##maf version=1 scoring=roast.v3.3
a score=1404.000000
s ce10.chrX              59063 107 + 17718866 attttgagtgtaAGTCGCTGAAAATT---TACATGTTGAAT-ATATTAAAAATTATTAAGCAAGTTCGAA----CGACAAAAATGTTCCAAAAAGCGTTTTCTGAGCAGAAAACT
s caeRem4.Crem_Contig19 645029 115 -  1278986 attttgagtaaaaattgtcgaaaattcTGTATATTTCGACTTctaatcgaaatttgaaaacatagcCGGAAACTCgtctttaaaattcaaaaatttaatttttgtactgCAAACC
i caeRem4.Crem_Contig19 N 0 C 0

a score=-621.000000
s ce10.chrX              59170 58 + 17718866 CGAAAATGTTGTTTCGTTTTCGCGAATTT------TAGGACAAAAAACTCAATTTCAAACAGCG---
s caeRem4.Crem_Contig19 645144 65 -  1278986 CGGGTCGATTGACCCGTTTTACTGAATATTTAGTCTGGTTTAGACACCTTATTTTAAAACAGCCg--
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589  383052 50 -   402565 cgaaaaaatttttttgtattaat------------TGGAAGAGAAACCTCATC-----ACTGCAGCG
i caeSp111.Scaffold589  N 0 C 0

a score=529022.000000
s ce10.chrX                59228 1551 + 17718866  
s cb4.chrIV             10853214 1528 + 17485439  
i cb4.chrIV             N 0 C 0
s caeRem4.Crem_Contig19   645209 1571 -  1278986  
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589    383102 1531 -   402565  
i caeSp111.Scaffold589  C 0 I 959

a score=589.000000
s ce10.chrX                60779 5 + 17718866 ATTCA
s cb4.chrIV             10854742 5 + 17485439 ATCAA
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   646780 5 -  1278986 ATCTA
i caeRem4.Crem_Contig19 C 0 I 1404
e caeSp111.Scaffold589    384633 959 -   402565 I

a score=597.000000
s ce10.chrX                60784 16 + 17718866 AAGCTTGTATCTTTTT
s cb4.chrIV             10854747 16 + 17485439 AATACTGTATTTATTT
i cb4.chrIV             C 0 I 1809
e caeSp111.Scaffold589    384633 959 -   402565 I
e caeRem4.Crem_Contig19   646785 1404 -  1278986 I

a score=0.000000
s ce10.chrX                60800 302 + 17718866 CAATAATTGGTAGTCTTCTTCGTGGTACTCATTGGGATCGGTCTTGTTGGATATTGTTGAGAACAGTTTTCCCGAGTAGTTTTTCCCTAGTTCGTCGTTGTTTTGGAGCTTGCTGGTTGTCTGCCATATGGTTTTACTGAACAATTCTAGTTGGGTTCAATTCCGGGTGTCACAGCCACAACTGTCCTGAAACTTGCAGAGTGCGATAAGAGTTCGGCTATTTTGTGTATCTTTTGCCTTTACAGTGCTCTTTAAAATACATACGGGTTCATTAAAAGATGGATCTAATATTTAAGGGGAAA
e cb4.chrIV             10854763 1809 + 17485439 I
e caeSp111.Scaffold589    384633 959 -   402565 I
e caeRem4.Crem_Contig19   646785 1404 -  1278986 I

a score=293.000000
s ce10.chrX                61102 55 + 17718866 TCACAACACTGATGAA----ATTGGGGAGAAC------TAGTAAGCACGAC-----AAATACATCAATCA
s caeRem4.Crem_Contig19   648189 70 -  1278986 TCACAACTCTAATGAACGAAATTAAATAGAAAATCACATAATTAACAGGAGCTCGGAAATGTATTATAGG
i caeRem4.Crem_Contig19 I 1404 C 0
e cb4.chrIV             10854763 1809 + 17485439 I
e caeSp111.Scaffold589    384633 959 -   402565 I

a score=-174.000000
s ce10.chrX                61157 4 + 17718866 ---ATAC
s cb4.chrIV             10856572 4 + 17485439 ---ATGG
i cb4.chrIV             I 1809 C 0
s caeRem4.Crem_Contig19   648259 7 -  1278986 ATAAAGG
i caeRem4.Crem_Contig19 C 0 C 0
e caeSp111.Scaffold589    384633 959 -   402565 I

a score=175800.000000
s ce10.chrX                61161 705 + 17718866  
s cb4.chrIV             10856576 835 + 17485439  
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   648266 603 -  1278986  
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589    385592 620 -   402565  
i caeSp111.Scaffold589  I 959 C 0

a score=194.000000
s ce10.chrX                61866  9 + 17718866 AAACGAGAC-
s cb4.chrIV             10857411 10 + 17485439 aaaagaactA
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   648869  9 -  1278986 aaatgaaac-
i caeRem4.Crem_Contig19 C 0 C 0
e caeSp111.Scaffold589    386212  0 -   402565 C

a score=-3478.000000
s ce10.chrX                61875 162 + 17718866 TTTGTAGGTTTCGAAAAGGTATGTCCGTAGATTTTAGGTGATTTACAAGAAAAATCGAAGCATTTCTAGTTTTTAATTTAAAATGTGTTAATTTTTAACAATTTCATCTTGTATAATTCGTTTTTTAATTGATTTTTTCGAAACTAGTAGTGTTTTAAACCA
s cb4.chrIV             10857421  41 + 17485439 -------------------------------------------------------------------AGTCTCTCACTTGG-----------------------CAGCTTG-------------------GATTCCCTCCCATGTAGAAG------------
i cb4.chrIV             C 0 C 0
e caeSp111.Scaffold589    386212   0 -   402565 C
e caeRem4.Crem_Contig19   648878   0 -  1278986 C

a score=-1641.000000
s ce10.chrX                62037 85 + 17718866 AGAAAATCATCAAAAATGGGTAAAATTTCATCAAGCTTGACTTTTTAAAAAAGTTTTTTAACTGAAAAGTTTTCCTAAAATCTCC
s caeRem4.Crem_Contig19   648878 17 -  1278986 aaaaaactat-------------------------------------------------------------------aaatctC-
i caeRem4.Crem_Contig19 C 0 C 0
e cb4.chrIV             10857462  0 + 17485439 C
e caeSp111.Scaffold589    386212  0 -   402565 C

a score=12177.000000
s ce10.chrX                62122 71 + 17718866 AATTCCGTACTTAGCAGCCTGAATTCCTTCCCAAATTGAAGCAAGTTTGATAAGAATCCGATCCTTCGAGA
s cb4.chrIV             10857462 30 + 17485439 -----------------------------------------CCAATTTGATAAGAATGCGTTCCTTCGAAA
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   648895 63 -  1278986 --------ACTTTGCAGCTTGGATTCCTTCCCATGTCGAAGCAAGTTTAATCAGAATGCGATCTCTAGAAA
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589    386212 71 -   402565 aatTACTTACTTGGCTGCTTGAATTCCCTCCCACGTGGATGCAAGTTTGATGAGAATTCTGTCTTTCGaaa
i caeSp111.Scaffold589  C 0 I 1

a score=273.000000
s ce10.chrX                62193 1 + 17718866 T
s cb4.chrIV             10857492 1 + 17485439 T
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   648958 1 -  1278986 T
i caeRem4.Crem_Contig19 C 0 C 0
e caeSp111.Scaffold589    386283 1 -   402565 I

a score=115866.000000
s ce10.chrX                62194 304 + 17718866 TCCTTCCTTCTCGTATTGAGCAATAAGTCCAAGAGCCCGATCAATCGATGCTTGAGTATCAAATGAAAGACGAGCATCAACTTCTGTGGAAACTCTTCCTGGAATAGTTTTCAGGATTTCTTATCCAAAAACTACAAAAAGTCGATCCATAGCCGCTTGGGGCACTTCTTGATGTCCAC---------TGGCGTGCTCTTTTGCGTAGGCAACTGATTGATCGATTAGTGCTGCGTATTGCTCCATTTTTGAGGCGACCATGATGAGCGATGGGTTGGTAGTTGCATCTGTTGGCTGGAATTCCC-----GCTGAAAA
s cb4.chrIV             10857493 318 + 17485439 TCCTTCCTTCTCGTATTGAGCAATAAGTCCGAGTGCTCGATCAATCGATGCTTGAGAATCGAAAGAGAGACGAGCATCAACTTCAGTGGAAACTCTTCCTGGAAtcgtcttcagaatttcttttccAAAGACAACGAATAGACGATCCATGGCCGCCTGAACGATTTGCTGATGACCATGATGACCAGTGGCGTGTTCCTTCGCATATGCGACAGCTTCGTCGATCAATGCAGCGTATTGCTCCATCTTGGAAGCAGCCAAAATGAGAGATGGATTAGTGGTAGCATCAGTGGGCTGGAACTCTTTGATGGCTGGAAA
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   648959 309 -  1278986 TCCCTCTTTTTCATATTGAGCAATGAGTCCAAGAGCACGATCAATGGAAGCTTGAGAATCGAAAGAGAGACGAGCATCAACTTCGGTCGAGACTCTTCCCGGAATCGTCTTCAAGATTTCTTTTCCGAAAACTACGAATAGACGATCCATGGCAGCTTCAACAATTTCTTGGTGACCTT---------TAGCGTGTTCTTTGGCATAAGTCACCGCTTCATCGATGAGTGCAGCGTATTGTTCCATTTTGGATGCAGCCAGAATAAGAGATGGGTTGGTGGTAGCATCAGTAGGTTGAAACTCCTtgatagctgaaaa
i caeRem4.Crem_Contig19 C 0 I 1441
s caeSp111.Scaffold589    386284 309 -   402565 tccttctttctcgTATTGAGAAATGAGACCAAGAGCACGATCAATGGATGCTTGAGTATCGAAAGAAAGGCGAGCATCCACTTCAGTTGAGACTCTTCCGGGAATTGCCTTCAAGAtttcttttccgaaaacGACGAAAAGTCTGTCCATGGCGGCCTCGACGATTTGCTGATGCCCAC---------TGGCGTGTTCTTTAGCATAAGCAACAGCTTGATCGATAAGAGCAGCGTattgttccatttttgatGCTGCTAGAATGAGAGATGGATTGGTGGTGGCATCGGTTGGTTGGAATTCTTTGATAgctgaaaa
i caeSp111.Scaffold589  I 1 C 0

a score=-1725.000000
s ce10.chrX                62498 30 + 17718866 -------AAATCGATTTTTTGAGAACAATTTTTGAAA-
s cb4.chrIV             10857811 34 + 17485439 AGGAATAGAATTAGACTgatgag---aatttttcaga-
i cb4.chrIV             C 0 I 1432
s caeSp111.Scaffold589    386593 16 -   402565 -------------------ttcg---aagatttcaaaa
i caeSp111.Scaffold589  C 0 C 0
e caeRem4.Crem_Contig19   649268 1441 -  1278986 I

a score=582.000000
s ce10.chrX                62528 11 + 17718866 AAATTACTTTT
s caeSp111.Scaffold589    386609 11 -   402565 ttattactttt
i caeSp111.Scaffold589  C 0 I 1377
e cb4.chrIV             10857845 1432 + 17485439 I
e caeRem4.Crem_Contig19   649268 1441 -  1278986 I

a score=0.000000
s ce10.chrX                62539 3961 + 17718866  
e cb4.chrIV             10857845 1432 + 17485439 I
e caeSp111.Scaffold589    386620 1377 -   402565 I
e caeRem4.Crem_Contig19   649268 1441 -  1278986 I

a score=3.000000
s ce10.chrX                66500 10 + 17718866 TTTTTTTTTT
s caeSp111.Scaffold589    387997 10 -   402565 TTCTCCGCTA
i caeSp111.Scaffold589  I 1377 C 0
e cb4.chrIV             10857845 1432 + 17485439 I
e caeRem4.Crem_Contig19   649268 1441 -  1278986 I

a score=573.000000
s ce10.chrX                66510 2 + 17718866 AC
s cb4.chrIV             10859277 2 + 17485439 AC
i cb4.chrIV             I 1432 C 0
s caeSp111.Scaffold589    388007 2 -   402565 AC
i caeSp111.Scaffold589  C 0 C 0
e caeRem4.Crem_Contig19   649268 1441 -  1278986 I

a score=27905.000000
s ce10.chrX                66512 149 + 17718866 TCAGCGGCGAGCATTCCAACAGTTCGGGACATTGCAGCCCATTGTTCGTCGGCTTTCGAGTTGGTTGGACGGTCACTGGGTCCTTGCTGGGAGCTACGTGGATC-TTGATCTTCTGGCTCATCGATCATTCCTGTCACCAAGTC-TTTTGT
s cb4.chrIV             10859279 140 + 17485439 TCTGCAGCGAGCATGCCGACAGTTCGAGACATTGCGGCCCACTGTTCGTCGGCTTTCTCGTTGATTCGACGAACAGTTGA---TTGATCTGGACGTTCTGGACT-------TTCGGGTTCGTCTATCATTCCCGTCACAAGGTC-TTTGGT
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   650709 146 -  1278986 TCAGCAGCCAACAATCCGACCGTTCGAGACATTGCAGCCCACTGCTCATCAGCTTTGTCATTTATTGGCCTTATGCTAGA---TTTTTCAGGA-GTTCGGCACTCATGTTCCTCTGTTTTATCGATTATTCCTGTCACCAGATC-TTTTGT
i caeRem4.Crem_Contig19 I 1441 C 0
s caeSp111.Scaffold589    388009 146 -   402565 TCAGCAGCCAGCATTCCAACTGTTCGTGACATTGCAGCCCACTGCTCATCAGCTTTGTCATTCATTCGA-GAGTGTTCAA--CTTCTTCAGAACCATCAGcact-ttgattttcttgatCATCGGTGATACCGACGACTAATTCATtctg-
i caeSp111.Scaffold589  C 0 C 0

a score=3693.000000
s ce10.chrX                66661 20 + 17718866 GGTTTCCTCGATCTGAAATT
s cb4.chrIV             10859419 18 + 17485439 GGTTTCTTCGatctgtaa--
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   650855 20 -  1278986 GGTTTCttcgatctgaaatt
i caeRem4.Crem_Contig19 C 0 I 34
e caeSp111.Scaffold589    388155  0 -   402565 C

a score=428.000000
s ce10.chrX                66681 25 + 17718866 GTGGGAAAATTGAGCAACTGGaatt
s cb4.chrIV             10859437 17 + 17485439 ----aaaaatt----aattgaaatc
i cb4.chrIV             C 0 C 0
e caeSp111.Scaffold589    388155  0 -   402565 C
e caeRem4.Crem_Contig19   650875 34 -  1278986 I

a score=0.000000
s ce10.chrX                66706 667 + 17718866  
e cb4.chrIV             10859454   0 + 17485439 C
e caeSp111.Scaffold589    388155   0 -   402565 C
e caeRem4.Crem_Contig19   650875  34 -  1278986 I

a score=1139.000000
s ce10.chrX                67373 23 + 17718866 tccatttttcagcttaaaaTTCA
s caeSp111.Scaffold589    388155 23 -   402565 ttcttctttcatctggaaattca
i caeSp111.Scaffold589  C 0 C 0
e cb4.chrIV             10859454  0 + 17485439 C
e caeRem4.Crem_Contig19   650875 34 -  1278986 I

a score=-1517.000000
s ce10.chrX                67396 18 + 17718866 -----AATTTTCAG---AAATTTTTC--
s cb4.chrIV             10859454 21 + 17485439 -----AATTTCCAAATCAAATGCATT--
i cb4.chrIV             C 0 C 0
s caeSp111.Scaffold589    388178 28 -   402565 aaCATGAGGCTCGATGACAATATATTTC
i caeSp111.Scaffold589  C 0 I 4
e caeRem4.Crem_Contig19   650875 34 -  1278986 I

a score=600018.000000
s ce10.chrX                67414 1910 + 17718866  
s cb4.chrIV             10859475 1901 + 17485439  
i cb4.chrIV             C 0 I 36
s caeRem4.Crem_Contig19   650909 1895 -  1278986  
i caeRem4.Crem_Contig19 I 34 C 0
s caeSp111.Scaffold589    388210 1885 -   402565  
i caeSp111.Scaffold589  I 4 C 0

a score=-1031.000000
s ce10.chrX                69324 39 + 17718866 ------GGAATTGTAGTCTACAACGCTGAACGTCGTGGAGAGCTG
s caeRem4.Crem_Contig19   652804 39 -  1278986 ATCATCTGATTTGTAG------ACAGAGGAGTTTGTAGATACCAG
i caeRem4.Crem_Contig19 C 0 I 3
s caeSp111.Scaffold589    390095 36 -   402565 ATCagttgatttgaaa------acataaaattcaGCGAGTCG---
i caeSp111.Scaffold589  C 0 C 0
e cb4.chrIV             10861376 36 + 17485439 I

a score=83120.000000
s ce10.chrX                69363 433 + 17718866 ATCATTGCTTCGTTTCATATTTCCAATCAGTGTCGACAGCTTTTCAGCCCATTTTGTAAGCTTCTGAGCAGTCTCGTCGGTTTGCGAGAGCTTCGAGAGTGGGTGTAGGTGCTCTTTGGTTCGGATGAATTCTGAAAATTTCAAAAA--TTTATACTCTAAAGCTC-TGATTTAGTCC----ACAAACCATCTGCATTCGCTGGAATCGCGACGAGTCGTCTCTTGATGGCTCCGATGAGCACTTGAACAGTGGAAATCAGGCCTCCGATCTTTTCAACTCGTCCTTTCACAATTTCATGATCAATAATCCAGTCGCTTCTCTGATTCTCACTGATAATTCGGAGCTCTTCAGAATGCACACGGATCTCTGCGACTTGTGACTTCCATTTTCTAATGTTTTCTTGGAGAGTGATCATGTAAACCATTCCGTACTCTGAAA
s cb4.chrIV             10861412 429 + 17485439 CTCATTGATCCGCTTCATATTTTCAATCAATGTAGACAACTTCGCGGACCAGTTCACAAGTTTCTGAGCAATCTCATCGGATTGTGAAAGTTTGGATAGCTGATGGAGATGAGACTTTGAACGgataaactctgaaaa-atcgaaat--actATTAATAAATGATT-CGTTGAAAACT-------AACCATCTGAATGATAAGGAATCGCTTCCAATCTTCGTTTCATGGATCCAACAAAAACTTCCATTGACGAAATCAGACCAGcaactttttcgattcttcCTTTAACAATCTCATGATCGATTATCCATCCACTTCGTTGATTTTCGGACAAAACTTTGAGATGTGCGGAGAAGgaatgcatttttgaaatgctTGATTTCAGATCACCAATGCTTTGTTGCAGAGAAATCATGTAAGACATTCCGTactctgaaa
i cb4.chrIV             I 36 I 40
s caeRem4.Crem_Contig19   652846 437 -  1278986 ATCATTTGTTCGCTTCATGTTTTCAACAAGAGTCGACAACTTCTCAACCCAACTGATTAGCTTCTGAGCGATTTCATCGGCTtgggaaagttttgaaagtggATGTAGATGTGTCTTCGATCGAATATACTCTGAAAACACCaaaatgaacttttaaaaGAAGTTTATAATAAAAACT---AACGAACCATCTGAAGAAGCTGGAATGGAAGCTAGTCTCCGTTTCATGGAGGTAATGAAGACTTGGATAGTTGAAATCAATTTGGTAACATTTGCAGCTCGTTCTTCAACAATTTCGTGATCGACTATCCATCCTACTATCTGATTTTCACTGATAGCTTGAAGCTGTTCAGACTGAGACTGTAATTTGGAAACTTGAGATTTCAGAgttgaaatatttgtttgcAGAGACAACATGTATGCCATTCcgtattctgaaa
i caeRem4.Crem_Contig19 I 3 C 0
s caeSp111.Scaffold589    390131 431 -   402565 TTCATTCGTCCGCTTCAAATTTGATGTAAGAGTGGAGAGCTTTTCGGCCCAATCAGTAAGTTTCTTGGCAGTTTCGTCCGATTTAGAAAGTTTTGAGAGGGGATGTAGATGAGTTTTCAATCggattttctctgaaaatataaacaa--TTCATTGAGAA-------GCATAAAACCTTCACACTAACCTTCACATGTTTCGGGAATAAGATCTATTCTATGCTTGATGGATCCAACGAGAACTTCGATAGTCGAAATGAGTTCGACCATTTTGCTAACTCGTTCTGATATGAGTCCGTGATCAACAATCCAAACATCTCTTTGGTTTTCACAAATTACTTTGAGCGTTTGAGAATGTTTCCGGATCTTCGAGATTTGAGACTTCCAGTTAccaatatttttctggagTGAAAGCATGTAGGCCATGCcgtattctgaaa
i caeSp111.Scaffold589  C 0 I 245

a score=218.000000
s ce10.chrX                69796 36 + 17718866 A-----TTGGGCTTTGGAGAAAATGTTTTTAAAAATCTAAA
s caeRem4.Crem_Contig19   653283 33 -  1278986 aaacactT--GCTTTGAA------TTCGTTAAAAATCTAGA
i caeRem4.Crem_Contig19 C 0 C 0
e cb4.chrIV             10861841 40 + 17485439 I
e caeSp111.Scaffold589    390562 245 -   402565 I

a score=0.000000
s ce10.chrX                69832 814 + 17718866  
e cb4.chrIV             10861841  40 + 17485439 I
e caeSp111.Scaffold589    390562 245 -   402565 I
e caeRem4.Crem_Contig19   653316   0 -  1278986 C

a score=45.000000
s ce10.chrX                70646 5 + 17718866 ATAAT
s caeRem4.Crem_Contig19   653316 5 -  1278986 AGCAT
i caeRem4.Crem_Contig19 C 0 C 0
e cb4.chrIV             10861841 40 + 17485439 I
e caeSp111.Scaffold589    390562 245 -   402565 I

a score=273.000000
s ce10.chrX                70651 1 + 17718866 T
s caeRem4.Crem_Contig19   653321 1 -  1278986 T
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589    390807 1 -   402565 T
i caeSp111.Scaffold589  I 245 C 0
e cb4.chrIV             10861841 40 + 17485439 I

a score=154364.000000
s ce10.chrX                70652 506 + 17718866  
s cb4.chrIV             10861881 509 + 17485439  
i cb4.chrIV             I 40 C 0
s caeRem4.Crem_Contig19   653322 509 -  1278986  
i caeRem4.Crem_Contig19 C 0 C 0
s caeSp111.Scaffold589    390808 512 -   402565  
i caeSp111.Scaffold589  C 0 C 0

a score=300.000000
s ce10.chrX                71158 1 + 17718866 C
s cb4.chrIV             10862390 1 + 17485439 c
i cb4.chrIV             C 0 C 0
s caeSp111.Scaffold589    391320 1 -   402565 C
i caeSp111.Scaffold589  C 0 C 0
e caeRem4.Crem_Contig19   653831 0 -  1278986 C

a score=282.000000
s ce10.chrX                71159 3 + 17718866 AAC
s caeSp111.Scaffold589    391321 3 -   402565 AAC
i caeSp111.Scaffold589  C 0 I 3
e cb4.chrIV             10862391 0 + 17485439 C
e caeRem4.Crem_Contig19   653831 0 -  1278986 C

a score=0.000000
s ce10.chrX                71162 726 + 17718866  
e cb4.chrIV             10862391   0 + 17485439 C
e caeSp111.Scaffold589    391324   3 -   402565 I
e caeRem4.Crem_Contig19   653831   0 -  1278986 C

a score=91.000000
s ce10.chrX                71888 1 + 17718866 T
s caeRem4.Crem_Contig19   653831 1 -  1278986 T
i caeRem4.Crem_Contig19 C 0 C 0
e cb4.chrIV             10862391 0 + 17485439 C
e caeSp111.Scaffold589    391324 3 -   402565 I

a score=1394.000000
s ce10.chrX                71889 6 + 17718866 AATCTT
s cb4.chrIV             10862391 6 + 17485439 aatttt
i cb4.chrIV             C 0 C 0
s caeRem4.Crem_Contig19   653832 6 -  1278986 AATTTT
i caeRem4.Crem_Contig19 C 0 C 0
e caeSp111.Scaffold589    391324 3 -   402565 I

a score=310310.000000
s ce10.chrX                71895 895 + 17718866  
s cb4.chrIV             10862397 890 + 17485439  
i cb4.chrIV             C 0 N 0
s caeRem4.Crem_Contig19   653838 892 -  1278986  
i caeRem4.Crem_Contig19 C 0 N 0
s caeSp111.Scaffold589    391327 889 -   402565  
i caeSp111.Scaffold589  I 3 C 0

a score=0.000000
s ce10.chrX             72790 8 + 17718866 TTTGAATT
e caeSp111.Scaffold589 392216 0 -   402565 C

a score=1276.000000
s ce10.chrX             72798 71 + 17718866 TATTGTAGATTTTTGGAAAAAAAAAATTTTTG--AAGTTTTTTTCAAAATAAATGACTACAAATACTTTTTTT
s caeSp111.Scaffold589 392216 71 -   402565 -atgatcGATGATAGTGatagaaaagtttttgtaaaattctTACCGACAC-ACTGACTCCAAACAGAGTTTTT
i caeSp111.Scaffold589 C 0 N 0

a score=151.000000
s ce10.chrX   297835 3 + 17718866 TTT
s cb4.chrX  20915574 3 - 21540570 TCT
i cb4.chrX  N 0 C 0

a score=27313.000000
s ce10.chrX               297838 155 + 17718866 TCAGGGGCTTGCTGCACAGCACCTATCACCCCAGGATGTCGACTTCCCCGACAATGTTATAAATACATAATGTCAAACTGTCCAGACAGAAAAATTGCAGTTTTTTCCAGAAAAGTTGGAAATGATCGCCGCTCTGCTCCGAGAAAACCGTTGGT
s cb4.chrX              20915577 155 - 21540570 TGAGGTGCCTGTTGTACATCTCCAATTACGCCAGGATGCCGTTTACCTCGGCAGTGTTATAAATACATTATGGCCAATTGTCCAGATAGGAAAATTGCTGTTTTCTCGAGGAAAGTTGGGAATGATAGACGATCGGCCCCAAGAAAACCTTTAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   122257 155 -  1162296 TCAGGAGCCTGCTGCACTGCTCCAATCTCTCCAGGTTGTCGGTTACCGCGACAGTGCTACAAATATATCATGGCTAACTGTCCAGATAGGAAAATTGCTGTGTTCTCAAGAAAAGTCGGGAATGATAGACGATCGGCACCAAGAAAGCCACTGGT
i caeRem4.Crem_Contig24 N 0 C 0

a score=77.000000
s ce10.chrX               297993 3 + 17718866 CAG
s caeRem4.Crem_Contig24   122412 3 -  1162296 AAG
i caeRem4.Crem_Contig24 C 0 C 0
e cb4.chrX              20915732 0 - 21540570 C

a score=0.000000
s ce10.chrX               297996 103 + 17718866 TTTTATTTTGTACTGATATAATTGTTTGAGCCCAAGCTAATTATCTTAAGCTCGAGCATTTGGGCTCGAGCTCTAGCATCTCGGCAGCAGCATTTGGGCTCCT
e cb4.chrX              20915732   0 - 21540570 C
e caeRem4.Crem_Contig24   122415   0 -  1162296 C

a score=318.000000
s ce10.chrX               298099 32 + 17718866 AATATTTCAGCTCTGAGGTTAAAAAAATACAT
s caeRem4.Crem_Contig24   122415 25 -  1162296 AATATTTCGGTT-------GAAATGAACGTAA
i caeRem4.Crem_Contig24 C 0 C 0
e cb4.chrX              20915732  0 - 21540570 C

a score=26965.000000
s ce10.chrX               298131 204 + 17718866 GATTTCCATTAGTACTGTTCCAAAACAATTGTTTGATAAT--------------TAAGGGCAAATGTGGAACATCGGAGGTAAACTATCAACCATGCACTTCCAAGGGAATTGCGAACAAACTCTTTTTGTCGTGCTGTCAATTGTATGTTCCAGAAGAATGCCATCACATGTGTGTGTACGAAACTGATCAGTCGGTTACTAGAAATATGGTAA---GTG-----------
s cb4.chrX              20915732 216 - 21540570 AACTTCCACCA--------TCAAGTTTCcaatgtgatttt--------ttcgctTCAGGGAAAGTGCGGAACAGCTGAAGTCAACTACCAACCTTGTACGTCAAAAGGAATAGCCAATAAACTGTTCCTTGCTTGCTGTCAGCTGTATGTTCCGGAGGAATGCCATCATATGTGTGTCTACGAGACTGACCAATCTGTCACTAGAAATATGGTGAACCTTgatactcttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   122440 215 -  1162296 ATCTTCTACCAG---TGATTCAAAATctctgtttgaaaataaaaacggtCGATTTCAGGGTAAATGTGGAACTGCTGAAGTAAACTACCAACCATGTACATCAAAGGGAATCGCCAATAAGCTATTCCTTGCTTGCTGTCAGTTGTACGTCCCAGAGGAGTGTCATCATATGTGTGTCTATGAAACTGATCAGTCTGTAACAAGAAACAtggtaa---tta-----------
i caeRem4.Crem_Contig24 C 0 I 52

a score=-3566.000000
s ce10.chrX               298335  30 + 17718866 TCCAAAGT------------AAATTCAAAA---------------------------------------------------------TAGTAAG----------------------------------------------------------------TTGCC
s cb4.chrX              20915948 163 - 21540570 ttcaaattgaaggaAGATGAAAACTTAAGAGCATGATTAAATGCTCTTTCGataaaatactgaaattcacGGGAATTTGAGTAGGGTTAGTAGGGTTAATAATCATGTGTATCCCTAACGGTCAACATGCGAAATTTTCGCCATCTTCTTCGCTTTCCTTTTC
i cb4.chrX              C 0 C 0
e caeRem4.Crem_Contig24   122655  52 -  1162296 I

a score=-8175.000000
s ce10.chrX               298365  43 + 17718866 ---------------------------------TAACGTTATA-------------------AATGACAATAA------------AACAATTGTGTT--------------GTGAGTACCT--------------------------------------------
s cb4.chrX              20916111 165 - 21540570 TTACTTTTTAGAGTTGAAACTGCTAGTCCCGAACAACTTCATTTTCCACAGAAAAGAAACCAAATACCCATCAAAATACCCATTGACAAGTTTTCTTTCTTCCACCGTTTGACATGTTGTTTTTGACCGAACACAACTGTTCCGCGGGGAAAAACCATCAATCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   122707  54 -  1162296 ---------------------------------TAACATTATATc-----------------aagatttgtgaaaaaatgc----aaaaattgtcTCT-------------GCATGTACTT--------------------------------------------
i caeRem4.Crem_Contig24 I 52 I 262

a score=147.000000
s ce10.chrX               298408 26 + 17718866 CTTTTATATTTCCAAAAACAAAC----TTT
s cb4.chrX              20916276 30 - 21540570 ATTTTGGTTTTGCAAAACTAAAACATGTAT
i cb4.chrX              C 0 C 0
e caeRem4.Crem_Contig24   122761 262 -  1162296 I

a score=30989.000000
s ce10.chrX               298434 137 + 17718866 TTGCAGCTGACCAACATGCGGAAAGATAGCCAGTGCCGAATTAAACACCTGTCGTCAATTTTGTACTGTGCCAGCCAGAACAGAGATAATAGGAAATGCTGCTTGGATTTAGATCTCAATGCCCCTCAACTTCAGGT
s cb4.chrX              20916306 137 - 21540570 TTACAGCTGACTAACATGCGAAAAGATAGCCAATGCCGTATCAAACACCTGTCGTCAATTTTGTATTGCGCCAGTCAAAATAGAGATAACAGAAAATGTTGCTTGGATTTGGATCTCAATGCTCCACAACTTCAggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   123023 137 -  1162296 TTACAGCTGACCAACATGAGAAAAGATAGTCAATGCCGCATCAAACACCTCTCTTCTATCTTGTACTGTGCCAGTCAAAACAGAGATaacagaaaatgttgtttGGATTTGGATCTGAATGCTCCACAACTTCAAGT
i caeRem4.Crem_Contig24 I 262 I 46

a score=128.000000
s ce10.chrX               298571 5 + 17718866 ATATA
s cb4.chrX              20916443 5 - 21540570 gtcta
i cb4.chrX              C 0 I 33
e caeRem4.Crem_Contig24   123160 46 -  1162296 I

a score=0.000000
s ce10.chrX               298576 442 + 17718866 AATAACTTGGAAGATTTTTTTGGAAAGAGTTTTCTATGGTGTGTAATTAATTGGTTATATCTCAAAAACCGGTAAAATATACATGTAAGGTTGTATATGCGCTTCTCAAAACACTGTTTTGCCTCACTGGTTCAGGTTATTAAGAAAACTGCTCCTATGAAAACTTCTCAGtctcaagttacagatgttccaaaaagaattgacaaaaatgagctcgcaaggtgtcgggcgttgtatctcttgactttaatgttttgaaacgttgaaacatgtgtgttaagatgtagatcacatattgggcaacagttaatcagttcaacttttctttcaaaatttcctaacttgaggtatactcatttgaaaaCTATGGCAAATTAGCGCGGCGCGGAACCCAGATAGTGTTGGCTGCGTGGGGCGCCGTATCATGGAAACCCGTTTATGT
e cb4.chrX              20916448  33 - 21540570 I
e caeRem4.Crem_Contig24   123160  46 -  1162296 I

a score=22.000000
s ce10.chrX               299018 22 + 17718866 CAACTAATGATAATAAAAACTT
s caeRem4.Crem_Contig24   123206 22 -  1162296 tcaCTCAAAATAATGCGATTAC
i caeRem4.Crem_Contig24 I 46 C 0
e cb4.chrX              20916448 33 - 21540570 I

a score=26440.000000
s ce10.chrX               299040 137 + 17718866 AGGTTGGATCTCGTTGCTTGCGAATGTGTGATCCATCGGGTACTTCAATCGATAGAATAACCAAGGAAGATGTGACTTGCCTGTATAATTGGAATGTTATTATGTACTGTCATCATGCCGGAATACGCGAAATGTAA-----------------------------
s cb4.chrX              20916481 166 - 21540570 aggTCGGATCTCGTTGCCTTAGAATGTGCGATCCATCGGGAACTTCAATTGACAGAATCACCAAAGATGACGTGACTTGTCTGTACAATTGGAATGTCATCATGTACTGCCATCATGCTGGAATTCGTGAAATGTAGAACAGTCAaatcatttcaatttaccgcaA
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24   123228 137 -  1162296 AGGTTGGGTCCCGCTGTCTCCGAATGTGTGATCCATCGGGTACCTCTATCGATAGAATAACCAAAGAAGATGTGACTTGCTTGTATAACTGGAATGTCATCATGTACTGCCATCACGCTGGTATCCGGGAAATGTGA-----------------------------
i caeRem4.Crem_Contig24 C 0 I 392

a score=1617.000000
s ce10.chrX               299177 241 + 17718866 CTCA-ACCACTTCATTTATTTATCTTTTTTAAGTT--CACCCTTCA-----------GCATACCAAAGGTTACATTTTTGCAGCAGTGCACTTATAATGTTGATAATAATAAAATATTAATTG--GAATATG--------ATGTTTGTTATCTTATCAGGCAATAGTCGACATTGATAAA--AATTGGAAGATTGCTTTCAAATTGATTTTT---------TTTTCCAATTATT-----TTA-CTTTTTGAAACATTTCA---TTTTACAATTCTATTGTTCCTT
s cb4.chrX              20916647 267 - 21540570 CTCATAccacttt-tctttttattttttttttgttgccaaCGCTTATCTCAAGAAATGCATTCCAAAGTATAA---TTTGCTTCCAAGAAATGAAGATTGTAACaatgataaaaaa--aattgcagaatgtGCAAAAATTATAATGGTTATAATAT------------AGAAGTGATAAAACAATTTGAACAGTCAAtccgttttgattttttgactcttgtttttagatgattgaaaattatttttttggaaaatttcatgtttttttgattGCATTACCTCTT
i cb4.chrX              C 0 I 1440
e caeRem4.Crem_Contig24   123365 392 -  1162296 I

a score=0.000000
s ce10.chrX               299418 938 + 17718866  
e cb4.chrX              20916914 1440 - 21540570 I
e caeRem4.Crem_Contig24   123365 392 -  1162296 I

a score=164.000000
s ce10.chrX               300356 45 + 17718866 CCAAACCTTCATCAGTGTGTGTAATAGAAAGAACAAGTGTCCTAC
s caeRem4.Crem_Contig24   123757 34 -  1162296 CCACATTTCCATCATTCTGCG----------ACCAAGTGGTC-GT
i caeRem4.Crem_Contig24 I 392 C 0
e cb4.chrX              20916914 1440 - 21540570 I

a score=17535.000000
s ce10.chrX               300401 215 + 17718866 TCAAACATACCAATAAACATACAACAATAAGGTGGG---CCCAG-GGAG--------------CGCACGTATCATATCCTCTTTTTCTACACATACACCAGATGATGGAGCATCA-TCAGACAACTGACTTCAATTCGATGACACTCTGGATTATA---TGTATCAA----GAGGGGGAAACAATTGAGGG-------GAGGGGGCAGATGAAAGA---ATCGTCGCTTGTGATTCTCAATTCAATTTTCA-
s cb4.chrX              20918354 235 - 21540570 TCGTACATGTCAATAAACACACAACAATGGGTCCTCGGATCCGGTGGAGCACAAACACACATACACAAGTGGCATATCTTCGGT-----CGAATTCACTAGATTGTAGAGCAACA-TCAGACAACTGTCCTCGATTAGATAACACACGCGATTATATGTTGTATCAGAAACGAGTGAGAGACAATTGTGATAAAAGAAAGAGGGGCAATTGTTAGA---GAAGGCGGTAGt--------tctcaaaattgaa
i cb4.chrX              I 1440 C 0
s caeRem4.Crem_Contig24   123791 225 -  1162296 TTGAACATGCCAATAAACACACAACAATGGGTCTTC---TTCAACGGAg---gagcacacacacacaagTAGCATATCTT-GCT-----CGGATACACCAGATGATGGAGCATCATTCAAACAACTGTCTTCAATTCGATAACACACGCGATTATA---TGTATCAGAGA-GAG-GGGGGACAATTGTGAT-------AGGGAGGGAATtgagagaattgaaatttcttgtg--tcctatctcttttttca-
i caeRem4.Crem_Contig24 C 0 I 186

a score=624.000000
s ce10.chrX               300616 8 + 17718866 TTTTTCTG
s cb4.chrX              20918589 8 - 21540570 ttcttcTG
i cb4.chrX              C 0 I 119
e caeRem4.Crem_Contig24   124016 186 -  1162296 I

a score=0.000000
s ce10.chrX               300624 1164 + 17718866  
e cb4.chrX              20918597  119 - 21540570 I
e caeRem4.Crem_Contig24   124016  186 -  1162296 I

a score=486.000000
s ce10.chrX               301788 56 + 17718866 TTAAATAATCTCGCAACATTTGTTTGAAATGTTGTTGT---------TCCAGAACAATAGTTTAT
s cb4.chrX              20918716 63 - 21540570 TTTAATAATCTCACAAATGTTATCT-AACTGTTTTCATATTGCAGGGTCCATCACGATAACCGA-
i cb4.chrX              I 119 C 0
e caeRem4.Crem_Contig24   124016 186 -  1162296 I

a score=7989.000000
s ce10.chrX               301844 103 + 17718866 ATGTAAATGCCGTACGTCGGAGTTGGAGCACAAACAGGT------------------AATTGTGTCATTTTTTGT-------TTGTGTGCATTTTTGACTATGGTTTGAGGTGACCCTAACAGCTGTT---
s cb4.chrX              20918779 128 - 21540570 ATGTAAATGCCGTACGTCGGTGTGGGAGCGCAAAAAGGTAACAAACCATTTCTCATTCATCTTCTCATTTATTACCTGCCGAATGTTTTCGTTTTCCTCTCACCATTGATGTGACCTGAACAACTGCT---
i cb4.chrX              C 0 I 704
s caeRem4.Crem_Contig24   124202  87 -  1162296 ATGTAAATGCCGTACGTCGGGGTGGGAGCACAGAAAGgt-------------------------------------------atgttttccattt-tttttaccTTTGCAATGACCTGAACAGCTGTCCCT
i caeRem4.Crem_Contig24 I 186 C 0

a score=473.000000
s ce10.chrX               301947 5 + 17718866 CAGTT
s caeRem4.Crem_Contig24   124289 5 -  1162296 CAGTT
i caeRem4.Crem_Contig24 C 0 I 215
e cb4.chrX              20918907 704 - 21540570 I

a score=0.000000
s ce10.chrX               301952 762 + 17718866  
e cb4.chrX              20918907 704 - 21540570 I
e caeRem4.Crem_Contig24   124294 215 -  1162296 I

a score=142.000000
s ce10.chrX               302714 12 + 17718866 AGTTTCCAAGAC
s cb4.chrX              20919611  9 - 21540570 agtttcaaa---
i cb4.chrX              I 704 C 0
e caeRem4.Crem_Contig24   124294 215 -  1162296 I

a score=19912.000000
s ce10.chrX               302726 167 + 17718866 AAATT---TAATTTCAGTTTCCACAAGCTTAACAGGAGCGCCTATGGTGAAGGCATACATTGCAATTGCTGCCTCTTTGATTTTTGTTTTTTGTATTGCTGCGTTGGGTGTTCATCACTCGGAAAGAAAGTTCAACAAATTCAATAAAGTTTCAATTGATGGTTAGTTTT
s cb4.chrX              20919620 166 - 21540570 -agtt---ttgttaCAGCTTCCACAAACTTGACGGGAGGTCCAATGATGAAAGCTTATGCTTTTGTTCTCGCTTTTTTCCTTCTTGGGTTAGGCGTCCTTGCTCTTGGAAAACATCACTCTGGACGACGATTCAACCAGTATAGCAAAGTTTCAATTGATGGTAAGTGTT
i cb4.chrX              C 0 I 291
s caeRem4.Crem_Contig24   124509 170 -  1162296 AAGTTTACTTTTTGCAGCTTCCACAAGCTTGACAGGAACGCCGATGGTCAAAGCTTATATAGCAATCGCTGCTTCATTAGTAGTAGTGATATGTATAACTGCAATTGGTGTTCATCACTCGGAACGGAAGTTCAATAAGTATAATAAAGTGTCCATTGATGgtaagtttt
i caeRem4.Crem_Contig24 I 215 C 0

a score=324.000000
s ce10.chrX               302893 13 + 17718866 GATTTTGAAGAAA
s caeRem4.Crem_Contig24   124679 13 -  1162296 gttttcttggaaa
i caeRem4.Crem_Contig24 C 0 I 23
e cb4.chrX              20919786 291 - 21540570 I

a score=0.000000
s ce10.chrX               302906 725 + 17718866  
e cb4.chrX              20919786 291 - 21540570 I
e caeRem4.Crem_Contig24   124692  23 -  1162296 I

a score=313.000000
s ce10.chrX               303631 15 + 17718866 TAATTTGATAAATGC
s cb4.chrX              20920077 13 - 21540570 TATTTTGatcaat--
i cb4.chrX              I 291 C 0
e caeRem4.Crem_Contig24   124692 23 -  1162296 I

a score=56426.000000
s ce10.chrX               303646 329 + 17718866 TATTTTCAGACATTCATAAATCTGATGCAGGAGTTATTCAAGACAACATAAAAACGGAAAACATCAAAAAGTACCTCCGAATATTCACAAAAGATCCACATGTAGCTGGAACAGAAGCTAACAAAAAAGTCGCTTACGAAATTGCAAATGCGTGGTCGGAAGCAGGATTGGAAGATGTTCACACATTACCGTATGAAGTTTTGCTGTCGTATCCTGACTTTGAAAATCCAAATTCTGTTATAATAAAGTCGTCGGCTGGAAAAGAAGTATTCAAGAGCAAGGGAGTTAGTCCAGTTATTATACCAGACGAGCAATCAGGAAAGTGTGAG
s cb4.chrX              20920090 322 - 21540570 ----ttcagatattcatgAAACCGATGCGAAAACAATTCAAGACAACATTAAATCCGAAAACATCAAGAAATACCTCCGCATCTTCACACAAGAACCCCATATTGCCGGAACCGATGCTAATAAAAAAGTAGCATATGCTATTGCTAGTGCTTGGACGGAAGCAGGTCTGGAAGATGTACACACCTTGCCCTATGAAGTGTTGTTATCTTATCCAGACTTTGAGAATCCTAATTCGGTTGTTATACAAAATTCAGCCGGGAAAGAAATTTTCCGGAGTAAAGGAGTCAGTCCAGTTATCATCCCCGATGAACAATCAGGAAAATGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   124715 329 -  1162296 tgtttttagaTATCCACCAATCCGATGCAAGAACTATCCAAGACAATATAAAATCCGAGAACATCAAAAAGTACCTTCGTATCTTTACCAAAGACCCACATATTGCGGGAACCGATGCTAATAAAAAAGTGGCATATGCGATTGCAAGTGCTTGGTCGGAAGCCGGATTGGAGGACGTACATACTTTGCCCTACGAAGTTTTATTGTCGTATCCAGATTTCGAAAACCCGAATTCAGTTGTAATCAAGAAATCGTCAGGGGATGAAGTTTTCCGGAGCAAGGGAGTTAGTCCAGTGATCATTCCTGATGAGCAGTCAGggaaatgtgag
i caeRem4.Crem_Contig24 I 23 C 0

a score=-2670.000000
s ce10.chrX               303975 101 + 17718866 TGACCTGTTAAATGGGTTGAGATAAAAATTATGACCTACCACAAAACTTTATAAAATCGACAATATAATTAAATAAATCAGACAAAGAATAATCTGAAATA
s cb4.chrX              20920412  13 - 21540570 ------------TGGttgcagat----------------------------------------------------------------------------tt
i cb4.chrX              C 0 C 0
e caeRem4.Crem_Contig24   125044   0 -  1162296 C

a score=-3427.000000
s ce10.chrX               304076 93 + 17718866 TTTTCGTTTCGGTTTCAAAGTGGTCAAAAGTCGTGTCACCCTCAGCGACTGTGCTAAAAACACATTTTGGCGGAGTCCTGAAAGCTTTTCTTA
s cb4.chrX              20920425 30 - 21540570 ------tttttatt---------------------------------actATCCCCAAATCGTATATTG------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   125044 35 -  1162296 ttttcctttttgtt--------------------------------aACTTTTCAGTAAT--TACATTG------------------------
i caeRem4.Crem_Contig24 C 0 C 0

a score=128171.000000
s ce10.chrX               304169 495 + 17718866 AACTTGTAAAATTCAGATGCTGGGCACCAGTGGCTTGCATATGCCGGCAATGGATCCGCTTCTGCAGACGTCGTCTACATTAATCACGGAACAGCCAACGATTTCAAGAACTTGAAGCTAATGGGTGTAGATATTAAAGGAAAAATTGCTCTGATGAGATACGGTCATGGTTTCCGGGGTGACAAAATTCATAAAGCACAGCAGGCGGGTGCGATTGGAGCTATACTGTTTTCGGATACACAGGATGTTGCTCAGGATGGTGTAGAATCAGGTTTGTAGTGGTGAAGTGAAGCTGTACATTTCCAAGTTGAGCAGTTCAAGATTCAAATTTAAAGAGC---AGTTTTTTT-----TTCAGAGAATGTTTATCCAAAAAAAATTTGGATGCCTAATGAGGGTGTTCAGAGAGGATCCCTTATGCATGGAGATGGAGATGCACTCTCTCCTTACTATCCTTCCAAAAAAGAACTTTTCAAAGGAAGAACTATTGAAGAGGTAGGT
s cb4.chrX              20920455 447 - 21540570 -------------CAGACGCGGGGCATCAATGGTTGGCGTATGGGGGTAATGGCACAGTTTCTGCCGACGTCGTCTATATCAATAGAGGAAACGCGAACGATTTCAAAAACCTGAAGTTGATGGGTGTCGATGTGAAGGGTAAAATTGCATTGATGAGATACGGTCATGGTTTTCGAGGTGACAAAGTGTACAAAGCACAACAAGCTGGTGCAATTGGAGCGATTCTGTTTTCTGACACTTCAGATGTTGCCCAAGACGGTGTTGATTCCGGTT----------------------------------AGAAAAACTT---------GCTTTGAGAGCTTCACTATTTTTATCTGTTCAGAGCATGTTTATCCAAAAACCATCTGGATGCCAAACGAAGGCGTTCAAAGAGGATCATTGATGCATGGTGATGGAGATCCACTCTCTCCTTTTTATCCTTCAAAGAAAGAACTCTTCAAAGGAAGAACTATTGAAGAAGTCGGT
i cb4.chrX              C 0 I 869
s caeRem4.Crem_Contig24   125079 455 -  1162296 ------------TCAGATGCCGGCCATCAATGGCTCGCCTATGCCGGTAATGGGTCTGCTTCCGCCGAAGTAGTGTATGTGAATAGAGGAAACGCCAAcgacttcaaaaatttgaaattaatggGTGTCGAAGTGAAAGGGAAGATTGCATTGATGAGATATGGTCACGGATTCCGAGGAGACAAAGTGTACAAAGCACAACAAGCAGGTGCTATCGGTGCTATTTTGTTTTCGGATACATCAGATGTCGCTCAGGATGGTGTGGAGTCcggtcagtttt-------------------ttttctgcgagagaaa------------gtttgaaaaatgtgaacatttgt-----ttcagaacatgTATACCCAAAAACCATCTGGATGCCAAATGAAGCTGTTCAAAGAGGATCGTTGATGCATGGGGATGGAGATCCATTGTCACCACACTATCCTTCGAAAAAAGAGCTGTTCAAGGGAAGAACTATTGATGAGGTATGG
i caeRem4.Crem_Contig24 C 0 I 4
s caeJap4.Scaffold54       15886 455 +   258924 aaaTTCTGTAATGCAGTTGCCGGTCATCAGTGGCTTGCCTATTCTGGAAACGGAACCGTCTCTGCGGAAGTTGTCTATGTGAACCGAGGAACCGCCAATGATTTCAAAAACTTAAAGTTAATGGGAGTGGATGTGAAAGGGAAAATTGCTCTGATGAGATATGGGCATGGATTTCGAGGTGATAAAGTGCACAAAGCCCAGTTGGCCGGAGCAGTTGGTGTGATTTTGTTTTCGGATACATCGGATGTGGCACAAGATGGAATTGAGTCTCGTGAGTGGA-------------------CTTGCTGG--------------------GTTTGTATAAC----TTTtattt-----tgcagaaaatgttTATCCAAACAAAATCTGGATGCCCAATGAAGGTGTACAACGAGGATCAATTATGCATCTTCACGGTGATGCTCTCTCACCCCACTACCCATCCAAGAAGGAGCTTTTTAGAAGTAGAACTATTCAAGAGGtttgt
i caeJap4.Scaffold54    N 0 C 0

a score=-33821.000000
s ce10.chrX               304664 285 + 17718866  
s caeRem4.Crem_Contig24   125538 538 -  1162296  
i caeRem4.Crem_Contig24 I 4 I 16
s caeJap4.Scaffold54       16341  43 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20920902 869 - 21540570 I

a score=16240.000000
s ce10.chrX               304949 141 + 17718866 TACAGATTTT---GTTATTACAT---------------------------------------------------------------------------TTTTAGGCTAAAGAAGACGGCGTTCTACCTTCAATACCAGTTCTCCCTGTCTCCTATACAACAGGATATGAAATTCTGAAACGATTATCCGGTCGGCCGGCTCCATCGGACTGGCAAGGTT---
s cb4.chrX              20921771 144 - 21540570 tagaggttttacggtaattgatt---------------------------------------------------------------------------TCCCAGGCAAAAGACGATGGAACGCTTCCTTCTATTCCAGTACTTCCGGTATCGTACACCACAGCCCTCCAGTTGTTGAAAAGAATGTCGGGTCGTGCAGTTCCCTCGGATTGGCaaggtt---
i cb4.chrX              I 869 I 31
s caeRem4.Crem_Contig24   126092 216 -  1162296 tgatattttttaaacaatttattttgaCTACTAAAAATCTTTGCGTGTTTTGACCTTTTAAAATCTGTGTTCCTGACTCATTGTCACCAAGTTCATCATTTAAGGCCAAAGAAGAAAGTGTTCTTCCCTCCATTCCCGTGCTCCCCGTTTCCTACACCACTGCTCTTCAAATCCTCAAACGAATGTCAGGACGTCCCGCTCCATCGGATTGGCAAG------
i caeRem4.Crem_Contig24 I 16 C 0
s caeJap4.Scaffold54       16384 123 +   258924 ---------------------------------------------------------------------------------------------------TTCAGGCTAAAGATGATCACGTTCTTCCTTCCATTCCAGCATTGCCAATCTCTTACACTACAGCGTTGCAATTGTTGAAGCGGATGAAAGGAAGGCCAGTGCCATTTGATTGGCAAGGTTAGT
i caeJap4.Scaffold54    C 0 C 0

a score=-290.000000
s ce10.chrX               305090 31 + 17718866 GTTCC--CTCTCCAAAAAATAATGTCATATTTT
s caeRem4.Crem_Contig24   126308 30 -  1162296 GTTTC--CTCTCCCTCAAATTTCATCA-ACTTT
i caeRem4.Crem_Contig24 C 0 I 4
s caeJap4.Scaffold54       16507 33 +   258924 ATTGcagatattaaaaaaaatgcattaaaatcc
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20921915 31 - 21540570 I

a score=7242.000000
s ce10.chrX               305121 367 + 17718866 GATAG--------ACTTCAGGATTTGTCGGTGGAAACCTCACTTACAAGCTTGGTCCAGGCTTTGTGAATGGAGAGAAATTGTCCATCAATGTGCACAGTGAGCTGAGGACAAAGTGAGTTAGTT---------------------------TGGAAATTTG-ATTTCTGCATGTTGAAGAGACACAAAATGAAAGCGTTGAGCGTATGAA-------AAATGACGTCACCACTTTCGGAAAAGAAGAGAAGAGCTAAACGAAACTAGTAGAGACAAACATTTTG----------------TATTTCTACAAAAGTACCAGGAATTAAAAAATTAAAGGTCCAATTGCaaaaatagttttaaaatatagaaattcacttgatatacctgtgcatagtcttttttttttggctggaac--gctagaaaa
s cb4.chrX              20921946 334 - 21540570 GAAAG--------TTTTCAGGATTTGTCGGAGGGAATCTCACATATAAACTTGGTCCGGGCTTTGTGAATGGCGAGAAATTGACAATAAATGTGCACAGTGAGCTGAAGACCAAGTGAGTTAGTGGC-----AAAAGAAA------------CGCAAATTTG-ATTTGAGATTGTTGAAGA-------AGTGAAG-----AGGGGAGTGAAAAAGCGTGAATGATGTCATTATACTCGACAAAGTCCTGAGCAGGATAATAAAAC----------------TTTATTTTGCCGAAATTAATAATTGGAACGAGTGAACCAAAAATTAAGTCATT----GTGCTAGCGTGAAAA-TGTTGCGA-----AGAAGTT--CTTGAAACA----------------------------GAAATCActaaaaaa
i cb4.chrX              I 31 I 18
s caeRem4.Crem_Contig24   126342 288 -  1162296 CAAAGCGTGCGTATTTTTAGGTTTGGTTGGCGGAAATCTCACATATAAACTCGGTCCTGGCTTCTTGAATGGCGAGAAATTGACGATAAATGTGCACAGTGAGCTGAAGACCAAGTGAGTTAGTGTtgtgagagaagaaagaagggaggaggaggaaatTTG-ATTTGTGCTTGTTGAAGA-------------------ATGCGAGTTAG-------TAATGATGTCATTGTACTC--------------TAGGGGATTGAA------------------TTCA----------------AATGTGAAGAGGTGTATGA-------------T----GTaacaatacaaaaattgtgtCTA-----AGGAAT----------------------------------------GAAG--ACTAGGAA-
i caeRem4.Crem_Contig24 I 4 C 0
s caeJap4.Scaffold54       16540 176 +   258924 -----------TATCTTTAGGACTTATTGGTGGCAACTTGACATATAAACTTGGCCCCGGGTTCACGAATAACGAAAAATTGACAATCACTGTGAATAGTCATCTAAAGACCAAGTGAGTT-------------------------------TGAAAAGTTGCATCTTATCTTCTC------------------------------------------TTCTCTTGCCATAA-------------------------------------------------ATCA----------------AATTTGTAAAAGT-------------------T----G----ggtggaaaa----------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0

a score=-2920.000000
s ce10.chrX               305488 41 + 17718866 actgcttaaacgctggctttgggcgcctttctctgatgttt
s caeRem4.Crem_Contig24   126630  4 -  1162296 --------------------------------CTGA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       16716 21 +   258924 ---------------attgcgcgCACGCTTTTGTGC-----
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20922280 18 - 21540570 I

a score=59328.000000
s ce10.chrX               305529 323 + 17718866 aatataaccaaatttctagttttcagatgaagtgattttctatattttgacactatttgtcaaataaaatcgttTGTAGCACTGCCGAAAATAATTGGCACACATCAACAC---TAATCAA-----AAGTAAATAGCACCTTTTCAGACGAATTAGAAATGTTATTGGATATATTCGTGGGTCTGAAGAGCCCGATAGCTATATTATGCTTGGAAACCATTTCGACGCATGGGTCTATGGATCAATTGATCCTAATTCTGGAACAGCTGTGTTGGCGGAGGTTGCGAGAGCCATGATGCAAACTATTAACGAAACCAGTTGGAAACCAGGT
s cb4.chrX              20922298 290 - 21540570 AATAGAA---------------TCACAGaaacaaaattcgaatattcgaAAAC-------------AGATCGGTT-------------AGAAAATTGTGACATGCTATCACGTTCAATGAATGCGTAAACTAATAGGTTTTCTGCAGACGAATTCGAAATGTGATTGGATACATCCGGGGTGCAGAAGAGCCCGATCGTTATATTATGCTCGGAAACCATTTCGATGCGTGGGTGTACGGATCAATTGACCCCAATTCTGGAACAGCTGTTTTAGCCGAAGTAGCAAGAGCAATGATGCAAACCATTAATGAAACTTCTTGGAGACCTGGT
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig24   126634 269 -  1162296 AATGTAA-AAAGTCCCTTTCActtagaaaaacagaaatcccAAATTC--------------------------------------------------TGAC--GCCTACacaaagaataaa-----aaagtcaca----ttttgtAGACGAATCCGGAATGTAATTGGCTACATTCGTGGTTCAGAGGAGCCAGATCGCTATATTATGCTTGGTAACCATTTCGATGCATGGGTGTATGGCTCAATTGACCCCAATTCTGGAACAGCAGTCTTGGCAGAAGTGGCGAGGGCTATGATGCAAACTATCAATGAGACTAGCTGGAGACCAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       16737 212 +   258924 ------------------------------------------------------------------------------------------------ACAATACGTGTATCC---CATTCAA--------------------TTGCAGACGAATTCGAAATGTAATTGGCTACATCCGAGGATCGGAAGAACCAGATCGCTACGTTATGCTTGGAAATCACTTTGATGCATGGGTTTACGGCTCAATTGACCCGAATTCGGGAACAGCAGTTTTAGCAGAAGTAGCCAGAGCAATGATGCAAACAATTAATGAAACTAGTTGGAGACCAGGT
i caeJap4.Scaffold54    C 0 I 1390

a score=-1736.000000
s ce10.chrX               305852 10 + 17718866 CTG----AAATTTT-
s cb4.chrX              20922588 15 - 21540570 CAGTTTAGAAATTTT
i cb4.chrX              C 0 I 104
s caeRem4.Crem_Contig24   126903  6 -  1162296 TGG----GAA-----
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54       16949 1390 +   258924 I

a score=-969.000000
s ce10.chrX               305862 70 + 17718866 TATGATGCACCGCTTTGAGACCCCTTTGTTTGAGAGGGTTTCAGGCATATTTGAACTTTTTCATGAATAA
s caeRem4.Crem_Contig24   126909 20 -  1162296 ----------------------------------------------ACAGTCGGATATT----TGAATAA
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54       16949 1390 +   258924 I
e cb4.chrX              20922603 104 - 21540570 I

a score=0.000000
s ce10.chrX               305932 57 + 17718866 ACAATATTGGTGTCTGAGACAGCATACCGAATAATTTAAGTGCCCGGGCGGTCAGTT
e caeJap4.Scaffold54       16949 1390 +   258924 I
e cb4.chrX              20922603 104 - 21540570 I
e caeRem4.Crem_Contig24   126929  0 -  1162296 C

a score=94.000000
s ce10.chrX               305989 138 + 17718866 TTGAACTTTTTGCTCTGTGCGCCAACTCTTGAGATATCAGAA------CTAATT---CCCAAAACGTATTTTGA--TCTACTCTTGTATTCGAAATGATGTTTTTTTTTT---------------------------CAAAAAGCTCGGTAGATAA---------AACATCTCAGTTTTTGATTT
s cb4.chrX              20922707 181 - 21540570 ccaaaattttt--tttgtttacaaatttttgatatcatagaagttgagataatttagctcaaagtgcaaataGAAGCTGATTCTAATAG--AACATGacgttttattttttttttgttagattAATTTAAAAGTTGCTAGAAATTTTACTAGAAAATTCTATTCCAgcatacttgtttttttttt
i cb4.chrX              I 104 I 401
e caeJap4.Scaffold54       16949 1390 +   258924 I
e caeRem4.Crem_Contig24   126929   0 -  1162296 C

a score=0.000000
s ce10.chrX               306127 4 + 17718866 GCCC
e caeJap4.Scaffold54       16949 1390 +   258924 I
e cb4.chrX              20922888 401 - 21540570 I
e caeRem4.Crem_Contig24   126929 0 -  1162296 C

a score=-219.000000
s ce10.chrX               306131 37 + 17718866 TTATTTTGCTAGAAATGACGATACGATGTTATTCTAA
s caeRem4.Crem_Contig24   126929 16 -  1162296 TTATATTGACGGA---------------------TAA
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54       16949 1390 +   258924 I
e cb4.chrX              20922888 401 - 21540570 I

a score=546.000000
s ce10.chrX               306168 2 + 17718866 TT
s caeRem4.Crem_Contig24   126945 2 -  1162296 TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       18339 2 +   258924 TT
i caeJap4.Scaffold54    I 1390 C 0
e cb4.chrX              20922888 401 - 21540570 I

a score=56190.000000
s ce10.chrX               306170 156 + 17718866 TTTTAGCTCGCACTATCGTATTCAACGCATGGGATGCCGAAGAGTTTGGACTTATTGGATCAACAGAATTCGTCGAAGAATTTGTAAATATTTTGCAGAAAAGAGCTGTGGTCTATATTAACATGGATTGTATTCAAGGAAACATAAGTCTGTAAG
s cb4.chrX              20923289 156 - 21540570 TTCCAGCACGTACCATTGTGTTTAACGCATGGGATGCGGAAGAGTTTGGTCTAATTGGTTCGACTGAATTCGTTGAAGAATTTGTTGATGTTCTGCAAAAACGTGCTGTAGTTTATATCAACATGGATTGTATTCAAGGGAACGCAAgtttgtaag
i cb4.chrX              I 401 C 0
s caeRem4.Crem_Contig24   126947 156 -  1162296 TTATAGCTAGAACTATTGTGTTCAATGCATGGGATGCTGAGGAATTCGGGCTGATTGGCTCCACAGAATTTGTCGAAGAATTTGTCGATGTTCTACAGAAACGAGCCGTTGTGTATATCAATATGGATTGTATTCAAGGAAATGCTagtttgtcag
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       18341 156 +   258924 CTTAAGCTCGAACTATTGTTTTCAATGCGTGGGATGCGGAGGAGTACGGATTGATTGGCTCTACAGAattcgtggaagagtttgttGATATCATTCAAAAAAGAGCCGTTGTCTACATAAACATGGACTGCATTCAAGGAAATTCGAGCTTGTTAG
i caeJap4.Scaffold54    C 0 I 43

a score=-1474.000000
s ce10.chrX               306326 19 + 17718866 GTTTATATTATTTAA------ACAA--
s cb4.chrX              20923445 19 - 21540570 ttttttgttttctga------acaA--
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig24   127103 27 -  1162296 ttttcagaatacttggaatttataata
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54       18497 43 +   258924 I

a score=52.000000
s ce10.chrX               306345 30 + 17718866 TTACTGACGGTGTACAGT-GCCTAAAAAATG
s caeRem4.Crem_Contig24   127130 25 -  1162296 tttc--ac----tacagtaacccaaagaagg
i caeRem4.Crem_Contig24 C 0 I 107
e caeJap4.Scaffold54       18497 43 +   258924 I
e cb4.chrX              20923464 22 - 21540570 I

a score=0.000000
s ce10.chrX               306375 33 + 17718866 TGCACCATTGACTGCTCAGATATGACTGAACAA
e caeJap4.Scaffold54       18497 43 +   258924 I
e cb4.chrX              20923464 22 - 21540570 I
e caeRem4.Crem_Contig24   127155 107 -  1162296 I

a score=-716.000000
s ce10.chrX               306408 51 + 17718866 ATTCGTCTTTAAAATAACTCAAACAAGTTGAAATGATCTGAAAACACCAAT
s caeJap4.Scaffold54       18540 17 +   258924 GCTCGTCTT-------------------------GATTTGAG---------
i caeJap4.Scaffold54    I 43 C 0
e cb4.chrX              20923464 22 - 21540570 I
e caeRem4.Crem_Contig24   127155 107 -  1162296 I

a score=-20245.000000
s ce10.chrX               306459 191 + 17718866 ATTTTATTTCAACAAGTT-----------------------------------------TTGAACATAGG------------------------------------AGTTATTTTTAAA--TATCTAACTGGC--ATTTTATACATTTTAATAACAGAACTTGTTTTGAAAAA-----TGTGTTTT--------------TTTTTTCAATACTC-CATCCCCTAACCGGCTCTCAT------ACAATTTCCT---TTTTACTCGCTCGAGT----------GAAATCA-------------TACTTTTCAAGTGAATTGATG-TG
s caeRem4.Crem_Contig24   127262 323 -  1162296 GTCTTGTcccaaaaagtggtcaactacaaaaatagtcGGCCTTATCCATCAGGCGCAAATTGAACACATTTACGCTATCTGTAGTATTAGTTCGCCCTTTCAATTCAGTTAAGTTTAGAGTTCTctaaaaaacagattttactcatttttctg--agaatttgGATAACAAAATCCCTTGTATCTTTTtacattttcgagtttttcctATATCCGCGTTTCTCCCCCCTCTCCCGTCAGACAACAACCTCATCAATTCAATACGCTCGAGTAGTAGTAAACGAAATCAAATgtattcttcttcctcctcaattttcttttttctc
i caeRem4.Crem_Contig24 I 107 C 0
s caeJap4.Scaffold54       18557  42 +   258924 -----------------------------------------------------------------------------------------------------------------------------CAGCAAGT--A-------------------AAGAAGCGGGCAGCAAAT-----TAGATTTC--------------TCTTTTC----------------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20923464  22 - 21540570 I

a score=133979.000000
s ce10.chrX               306650 379 + 17718866 AATTTTAGGCACGTCGACACAGTTCCGATTCTCGAGCACGCCGTCATTGAAGCATCAAAACAAGTGGAAAATCCATCAAAACGTGAGAGATCTCGCGGAAGAAAAACGCTCTATGACACGTGGATGAAAGTGTTTCCTGATAAGAAAGCGGGTGTTCCAAAAATAAGAGTTCCCGGCGGCGGATCAGATCACGCGCCATTTTTGAATTTTGCTGGTGTTCCGGTGATCAACTTCACTTTCAAAAACTACACAACATGGGACACGTATCCACTGTACCATACAATGTACGAGACGCCGTTTTCCAACATTCATCTATTGGATACAGACAACTTATCAGTGCACAAAGCAATTGGGCAGTATTGGGCTGAGTTGGCGAAGT
s cb4.chrX              20923486 379 - 21540570 AATTACAGACATGTCGACACAGTTCCCACTCTGGAGCATATCGCGATTGAAGCAGCAAAACACGTTCCAAATCCTTCGAAACGAGAAAGATCACGGGGAAGAAACACAGTGTACGATACTTGGATGAAAGTTTTCCCTGAAAAGAAAGCGGGTCGTCCAAAAATTCGTGTTCCTGGAGGTGGATCTGACCATGCAccgtttttgaactttgctGGTGTTCCTGTCATTAacttcaactacaaaaattacaCTACTTTCGATACTTACCCATTGTATCATAGTATGTACGAGACACCATTCACAAACATCCATCTGATGGATACCGAGGACCTTGCAGTACACAGAGCAATTGGTCAGTATTGGGCAGAATTAGCGAAGT
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig24   127585 379 -  1162296 aatttcaggcACGTCGACACAGTTCCGATTCTCGAGCATATCGCCATTGAAGCAGCAAAACATGTGCCGAATCCATCAAAACGAGAAAGAGACCGTGGGAGGAAAACTGTCTACGACACATGGATGAAAGTGTTCCCTGACAAGAAAGCGGGAGTTCCAAAAGTTAGAGTGCCTGGAGGAGGGTCTGATCACGCGCCATTTTTGAACTTCGCAGGAGTTCCAGtgatcaatttcaattataagAATTATTCAACGTTTGACACATATCCATTGTATCATACTATGTATGAGACACCGTTTACCAATATTCACCTGATGGACACGGAAGATTTGGGAGTACACAGAGCAATTGGACAGTATTGGGCAGAATTGGCAAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       18599 376 +   258924 ---TTCAGACACGTCGACACAGTTCCGATTCTCGAGCATGTTGCTATTGAAGCAGCAAAACAAGTAGAAAAcccatcaaaacgtgaaaaattgcgtGGAAGAAAAACTGTGTATGATACTTGGATGAAAGTATTCCCGGACAAGAAACAAGGAGTTCCAAGAATGAGAATTCCCGGCGGAGGATCGGATCACGCGCCATTTCTTAACTACGCGGGTGTTCCAGTCATAAACTTTAGTTATAGaaacttttcgatttttggcaCGTATCCATTGTATCATACCATGTATGAAACACCGTTTACAAATGAACACTTGCTAGATACTGACAACCTGTCAGTTCATAGAGCAATCGGCCAGTATTGGGCAGAATTGGCAAAGT
i caeJap4.Scaffold54    C 0 I 42

a score=-1210.000000
s ce10.chrX               307029 22 + 17718866 GAATTTTTTTCGAGCTAAATTT---
s cb4.chrX              20923865 17 - 21540570 GAGGTT-----GATCAAAATTT---
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig24   127964 18 -  1162296 AAGCT-------ATCAGAATTAAAC
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54       18975 42 +   258924 I

a score=-2109.000000
s ce10.chrX               307051 256 + 17718866 TTTTAATTCAGTTTTTGGCAATTTTTATTGAAAAATGGCCCCCTTTACTGTTTTTTATTGACATGTGGGGC----TATTTTTGAAACT--TCACTATCTGACTAATTTGATGAGTCAAGCTATAACTTAGATATAAACTCATATATTGGCACTACTATTTTAGAATACGTGATAGGTT---ATTTGTGAGCTTCTCGTTAAGCTTTAATGCCTTAAAATGTGAGAAATT------AGTTAAAA--TAAAGATTTCGATTCTAATT--AAAATAGG
s caeRem4.Crem_Contig24   127982 186 -  1162296 ---------------------------CTGAAATATAG---------------------GAGCTGTCAGGCAGTGTGGTCTTCAAACCGGTAGACATCCG--------TACTAGTCAAGCC------------CAGACCGAAAGACTGG------------ATAATTggcgaaaaattcaaagttcaaaatttctcg---------aattttctgaaatgttcttAATTTTCTTGAGtgaaaacgtcaaatttttgagtataattcagaaattgg
i caeRem4.Crem_Contig24 C 0 I 120
e caeJap4.Scaffold54       18975  42 +   258924 I
e cb4.chrX              20923882  16 - 21540570 I

a score=0.000000
s ce10.chrX               307307 99 + 17718866 AAAACCGAGATAAAATTGAGCTAATAACCACCCGGTTTCTATGTCACTTGTTTGTTTTTTTTTTGAAAAAAGTCAAAAAATGAGATTTTCTAGGAAAAT
e caeJap4.Scaffold54       18975 42 +   258924 I
e cb4.chrX              20923882 16 - 21540570 I
e caeRem4.Crem_Contig24   128168 120 -  1162296 I

a score=1043.000000
s ce10.chrX               307406 40 + 17718866 TTTAAAAAATCCCAGGGACGCGGTCAACCTTTTAAGATTT
s caeRem4.Crem_Contig24   128288 35 -  1162296 TTTAAAGGCTC-----GCCGTGGAAAATGTTTTAGGATTT
i caeRem4.Crem_Contig24 I 120 I 90
e caeJap4.Scaffold54       18975 42 +   258924 I
e cb4.chrX              20923882 16 - 21540570 I

a score=0.000000
s ce10.chrX               307446 87 + 17718866 AGACTGTGCGTGATCAGTTTTGATAATAAATTGAAGAAAACATGGGAACTGGAGGTTTTTTTTTTTTAATATCTTGAATCCGCATAT
e caeJap4.Scaffold54       18975 42 +   258924 I
e cb4.chrX              20923882 16 - 21540570 I
e caeRem4.Crem_Contig24   128323 90 -  1162296 I

a score=687.000000
s ce10.chrX               307533 53 + 17718866 AAAAATAATTTCCAATGCAAAATGTTCAGTTTCCGAATATTGATAAAAATTAA
s caeRem4.Crem_Contig24   128413 41 -  1162296 aaaaatgaatgccaa-aaaacatgtt-----------tatagaaaaaaagtta
i caeRem4.Crem_Contig24 I 90 I 40
e caeJap4.Scaffold54       18975 42 +   258924 I
e cb4.chrX              20923882 16 - 21540570 I

a score=0.000000
s ce10.chrX               307586 19 + 17718866 GGGTTTAATAGAACTGAAC
e caeJap4.Scaffold54       18975 42 +   258924 I
e cb4.chrX              20923882 16 - 21540570 I
e caeRem4.Crem_Contig24   128454 40 -  1162296 I

a score=409.000000
s ce10.chrX               307605 3 + 17718866 TTT
s cb4.chrX              20923898 3 - 21540570 TTG
i cb4.chrX              I 16 C 0
s caeJap4.Scaffold54       19017 3 +   258924 ttt
i caeJap4.Scaffold54    I 42 C 0
e caeRem4.Crem_Contig24   128454 40 -  1162296 I

a score=165086.000000
s ce10.chrX               307608 623 + 17718866  
s cb4.chrX              20923901 662 - 21540570  
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24   128494 634 -  1162296  
i caeRem4.Crem_Contig24 I 40 I 200
s caeJap4.Scaffold54       19020 622 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=582.000000
s ce10.chrX               308231 25 + 17718866 ------TGGGTTTTACTGTAATAATGAACAA
s caeJap4.Scaffold54       19642 31 +   258924 ATGGATAGGATGTCTTTGTATTATtgaataa
i caeJap4.Scaffold54    C 0 I 88
e cb4.chrX              20924563 39 - 21540570 I
e caeRem4.Crem_Contig24   129128 200 -  1162296 I

a score=0.000000
s ce10.chrX               308256 506 + 17718866 TTCACATTATAAAACTGAATCTCTAAAAATGAAGTACCAAATAGTTTTAACATGTAACGCTTGAAGATTGGGCTCAGAGCATTCCAGATAGCTGGAACAATTCAACATAATAGGATCAAACAAATTATGAAATATCGGAAATATATTACAAAAAATTTGAGGAAGTGTTTTCGTGCTTCACCACACTTTCCACACAATTGATTATAATGTTATTTTGAGATAACTTCTCAGTTTGGTAAATAGTAAAAGTTAGGGCTTTTGTTTGAGTCCCGCGAGAACACCTCATTACGGTACAACGCCTAAAAATTGAAATAATGATTCTATCAATGGGACCTGTAAGGAATCGTATCACAGTCAATTTACAGGGGCGCAGCAGAATGTGGGCACATTGAAAATAAAATTATGCACAATGTGGACACCGCGACTCACACACTGAGCGCATTGTGATCGGATATGGAAAAGTCGCAATTAGATAAACACTTGGGTAATAGACAACAAATATTTTC
e caeJap4.Scaffold54       19673  88 +   258924 I
e cb4.chrX              20924563  39 - 21540570 I
e caeRem4.Crem_Contig24   129128 200 -  1162296 I

a score=181.000000
s ce10.chrX               308762 99 + 17718866 AACAGATTATCACTTCATTCG---------------TCTTAAAATGGAATGTGGCGGAACGTCTTAACATATAAAAGCTTTTAGAACAAAATTGTGACAATAGCTTACAATATC
s cb4.chrX              20924602 99 - 21540570 aacAGAGTATCACTTTATTGGGACGGTCACGTCATTTTTTACAAGAAAAAGTAAC--------TAGATAAAGTAAAACGGTCGGAGTTTAAATGTGACAGA----TTCAAT---
i cb4.chrX              I 39 C 0
e caeJap4.Scaffold54       19673 88 +   258924 I
e caeRem4.Crem_Contig24   129128 200 -  1162296 I

a score=47264.000000
s ce10.chrX               308861 160 + 17718866 CTACTTTCTTTTGATGAGACATTGAATTGGTGAGTAGTAACAAGGCTTGAAACGTTTGTAGATTGGGTCCTTAATCTCGTCGCCATATTGTTT---CGAAGCGCCATCCATATAAAACAAGGTGTTCGGCGAGCGTTCTCGCTGTTGCATGTTTGCTCTGGAA
s cb4.chrX              20924701 162 - 21540570 -TACTTTCTCTTGATGAGACACTGGATTGGAGAGTAATAACAAGGTTTGAAGCGTTTGTAGATCGGCTGCTTCAACTCGTCCAAAAACTGTCCTGCTGGCGCATCGTTCATGTAGAAAAGCGAGTTTGGTGAACGATGACGTTGCTGCATGTTGGCTCTAAAA
i cb4.chrX              C 0 I 1655
s caeRem4.Crem_Contig24   129328 162 -  1162296 CTACTTTTTCTTAATGAGACATTGAATTGGCGAGTAGTAGCACGGCTTGAAACGTTTGTAGATGGGCTCCTTAATCTCATCAACATTTTGTCGGGATGGTGCCTCATCCATGTAGAACAACGTGTTTGGGGATCGTTGACGCTGTTGCATGTTggctctgaa-
i caeRem4.Crem_Contig24 I 200 C 0
s caeJap4.Scaffold54       19761 163 +   258924 cttcttcttttttataaGACATTGAATCGGCGAGTAGTAACACGGCTTGAAACGTTTGATAATTGGGTCTTTTATATCGTTGGAATACGGTACCATTGGCACTTCATCCATGTAGAAAAATGTGTTTGGCAAGCGTTCGCGTTGCTGCATCTGACTTCTGAAA
i caeJap4.Scaffold54    I 88 C 0

a score=-1684.000000
s ce10.chrX               309021 36 + 17718866 ------AGTATGTACTATAAATTAAACAA--GTTTTCAACAGTT
s caeRem4.Crem_Contig24   129490 30 -  1162296 ------aatgtgaactttgactca--------ttttcaaaagtt
i caeRem4.Crem_Contig24 C 0 I 1464
s caeJap4.Scaffold54       19924 35 +   258924 ATGGCATTTAAGCACTGTAAAAAAGAACATCGTTT---------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20924863 1655 - 21540570 I

a score=695.000000
s ce10.chrX               309057 40 + 17718866 CAAAATTCAATTAAAGTTTAAAAAAAGAGACAACATAAAA
s caeJap4.Scaffold54       19959 25 +   258924 CACAAT---------------AAAATGAAACaagataaaa
i caeJap4.Scaffold54    C 0 T 13563
e cb4.chrX              20924863 1655 - 21540570 I
e caeRem4.Crem_Contig24   129520 1464 -  1162296 I

a score=0.000000
s ce10.chrX               309097 2061 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20924863 1655 - 21540570 I
e caeRem4.Crem_Contig24   129520 1464 -  1162296 I

a score=3509.000000
s ce10.chrX               311158 199 + 17718866 TAACCTGAATGCGGCAGACGGAGTCAGGGATCCCAGTGCAAGCATTGGCTGCAAAATGGAGCAAACCAACATAACAGCAATAATCAGCGTTTTTTGAGCCATCATTTTAGATTGGAATATAGACACACAAGTGAAACGAGGAGAGCTTGAAAAAGCTATGTGAATGAGCA-----AGAAATCCTGACGCCTTGGGGCGGAGTCT
s caeRem4.Crem_Contig24   130984 193 -  1162296 TAACCTGAATGCCGCTGATGGTGTCAGTGATCCCAAAGTGAGCACAGATTGGATAAGGCACAAAACCAG------AACTGTTATCAATGCCTTATTAACCATTTTGTCGGA--GAGGCTTGAGCACACGAATGGAGCTTTGAG---CTGAACGAATGAAACGAGAGGAAAACCGGAGAAGCTCTGTtggaaaggggcggagttt
i caeRem4.Crem_Contig24 I 1464 I 42186
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20924863 1655 - 21540570 I

a score=0.000000
s ce10.chrX               311357 1692 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20924863 1655 - 21540570 I
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=2662.000000
s ce10.chrX               313049 41 + 17718866 GTACCAAGGTACAATGATTGCCTGCTACCCAACTCTTGTTA
s cb4.chrX              20926518 41 - 21540570 GTACCAAGGTACAATGTTCATCTGCTACCCTACGCATGTTA
i cb4.chrX              I 1655 I 43
e caeJap4.Scaffold54       19984 13563 +   258924 T
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=0.000000
s ce10.chrX               313090 1384 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20926559   43 - 21540570 I
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=5141.000000
s ce10.chrX               314474 255 + 17718866 AGTCAAGCATCATGGAATTTATATTGGTTCATGTACCGTGAACGAACATATCAAAAATTTCAGCACATTTTCCATTGTGATTATGTGCCTCCACATTTGAGATATAAAAAAATAGTGCTGACAGAAGGTGGAAAATATTTGACCTTTTCTTAAAATTTCTTTATTGTAAATTTGTAATGTCATTTTTTAAATAATTTTCAAACTTATG-GGTACT----TTTTTATTGAAGTGCTGAATTTCAAAATATTGTT-------TTTGAAA
s cb4.chrX              20926602 248 - 21540570 AGTCGAGAGTCGTGGAACACTTTCTGGCTAATGTACAAAGAAAAGGCCTATCATAAATATCGATATCTGTTCAGTGATGACTACATTTCACCACATCTTCGGGAAAATAAGATTGTTCTCACTGATGGTGGAAAAtacttaa---ttttttaaaatattttta---------------gttaTTCTTAAAATTCCTGTAAACATCAGGTAAAACTAGGATCTTTATCGAAG-GATCATTATCGAAACATTGTCAAATACGTTTGAAA
i cb4.chrX              I 43 I 5868
e caeJap4.Scaffold54       19984 13563 +   258924 T
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=0.000000
s ce10.chrX               314729 22533 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20926850  5868 - 21540570 I
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=2025.000000
s ce10.chrX               337262 53 + 17718866 GAAGTTGATGGACTTGTTCCATCAAAGCCAACTGTTGGAAGGTGTGGATCGTA
s cb4.chrX              20932718 53 - 21540570 GATGATGATGGGAGAGAACCATCGTAGCCGGTTGTCGAAACGTTTGGATCGTA
i cb4.chrX              I 5868 I 1332
e caeJap4.Scaffold54       19984 13563 +   258924 T
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=0.000000
s ce10.chrX               337315 4450 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20932771 1332 - 21540570 I
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=4751.000000
s ce10.chrX               341765 251 + 17718866 AACAAACCGTTATATTAGTGATGACATCAAATCCCAAAACATCGCAAGCTCCATCGGAC---AAGCATAACTTCATTTTTGGTTTGTCTGCATCAAGTATGAAACTTATGGAGGCTGAATTCAAAATTTCCAGCTCAAAGTCTCCGTAGAATATCTGTTGTGGATACATCT--AAAATACAACGTTTTTTTAT----TTCAAAAATCAATAAACTCCAAGTGACCCCATAACTCCAAATTTTATAATAAGTCTTTTCAAA
s cb4.chrX              20934103 255 - 21540570 AACTAACCGTAAAGTTTTTTACAACGGCGATGTCAAACTTTTCACA---TCTATCTGACGCAATCCTTAACTCAAATCCTGGTTGAGTAGCGTCTAATATGAAAGTCAGAGAGGTCGCATGTGTGACGTCAAGCTCAAATTCTCCATAGAACACTTGTTGTGGgtagaactgaaaaatgaagcattagtttagaaaattcaaaaagcgaTATACCGTTAATGTGATTGTa--tcgaacttttttgaaaaacattttccaa
i cb4.chrX              I 1332 I 12321
e caeJap4.Scaffold54       19984 13563 +   258924 T
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=0.000000
s ce10.chrX               342016 11228 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   131177 42186 -  1162296 I

a score=9331.000000
s ce10.chrX               353244 104 + 17718866 AAAAAAAGACTGAAGAGAGTGGGATTCGAACCCACGCCCCCGAAGGGACTGGTGCCTTAAACCAGCGCCTTAGACCGCTCGGCCATCTCTCCACATTTTTCTCT
s caeRem4.Crem_Contig24   173363 104 -  1162296 aaaaagaaactgaagagaGTGGGATTCGAACCCACGCCCCCGAAGGGACTGGTGCCTTAAACCAGCGCCTTGGACCGCTCGGCCATCTCTCCACATTTCTCTTT
i caeRem4.Crem_Contig24 I 42186 I 3575
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               353348 1537 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   173467 3575 -  1162296 I

a score=2165.000000
s ce10.chrX               354885 99 + 17718866 TGAAACCTGGACAGCAATTTGAATTGCAACTTGAAGATGCACCGGATTTTTACGTCATGGCCACTGTTGTCAAAAATTATCGTGGTTTCCTGTTGGTTG
s caeRem4.Crem_Contig24   177042 96 -  1162296 TGGAAATTGGGCAACACTTCGAACTCCAACTTGAAGAGTGCCCAGAGTTCGTGGCGGTGGTTCGAGTGGTGGCCAACCATTATGGT---CTATTGGTCG
i caeRem4.Crem_Contig24 I 3575 I 543
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               354984 163 + 17718866 AATATCAAAACGTCAGTTGTGTGCAAAAGTAAAATCTGGGTGCATCAAAACTTTGTAATAAACTTTTTTTGGTGTTTTGGAAACTTGAAAAACGGAAAATATTCAGAAAAACAATGCCAGTCTTTTTGTTTCATTTTTTAATGCTTTTTCAGTTCAAACGATG
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   177138 543 -  1162296 I

a score=2163.000000
s ce10.chrX               355147 41 + 17718866 GATACATATGCTCAGCCCATACTGTCATGAAATCGGTTGGG
s caeRem4.Crem_Contig24   177681 41 -  1162296 GGTTCACGTGACCAATCCATACTGTCACGAAATGGGATGGG
i caeRem4.Crem_Contig24 I 543 I 1143
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               355188 1618 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   177722 1143 -  1162296 I

a score=2816.000000
s ce10.chrX               356806 183 + 17718866 AAAATCTTGTT-CAGATTTTCCGGCCTACACCTACAGGAGCGTTGCAGTTGACGGCTGCCGAAGTGACTGGA-CAGCAAGAATGCATGCTACGGCTAAAAGTGAGCGGCGAGGATGAACCTGTGTACATTCACAATGCGTTAGTTTTTTTTTGTGGAAATATAAAGTATTGG-------------ATGTGAGAAAAAT
s caeRem4.Crem_Contig24   178865 196 -  1162296 AAAACATTGTTTCAGATCCTGCGGGAAAAGTCTGATGGCACCATGAAGCTGAAAGGAGCTCAAGTCGTAAAAGCATCACGCA-ACATGTTGTGCCTAAAAGTGGCCCATGAAGAAAAGCTCGTCTATACCCACATTGCGTGAGTTTTTGAGAgttaaaaaacggaa-attggatTATCTTtaataatttgagaaaaat
i caeRem4.Crem_Contig24 I 1143 I 10952
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               356989 3865 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   179061 10952 -  1162296 I

a score=3816.000000
s ce10.chrX               360854 109 + 17718866 TGTCTTCTAAAAGACAATCTGACTTAGAAATCAGAACACATCTTCGTCTTCTTCCACGGAAAGTTGGTAGTGGCTCGGAACAGGTAACATATTTTTCAAGAATTTTTTA
s caeRem4.Crem_Contig24   190013 105 -  1162296 TGTCCACCAAGCGGCAATCCAACTTGGAAATCCGTACTCATCATCGTCTACTTCCGAGAAAGGTTGGAACCTCGTCTGAGCAGGT----TGGTTTTCGGAAATCTCTCA
i caeRem4.Crem_Contig24 I 10952 I 1052
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               360963 1784 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   190118 1052 -  1162296 I

a score=3995.000000
s ce10.chrX               362747 188 + 17718866 TTTAGAAACGGCGAGAACGGTTTGATAGGATGAAATGTTCACTCCGGCACCGTGAAAACGCATTTATTCAAGAAGTTATTCGTC-------GCAAACAAAAAA--------TGGTTGAAAAGAAGCATTACGATGGCACAACCCAATTTTCAAGTTGTGATTATGTAATTATGGGAATTAAATCGATGTT---TTGCTTCAAATGA
s caeRem4.Crem_Contig24   191170 197 -  1162296 TTCAGAAACGTCGTAGACGCTTCGATAAGATAATTCGTGAACTCCGCCGTAAGGAAGACGCAtacatcaaaaaaatcattcgCCTGAAGCAACAAGCAAAGAACGGGGAGGTGGTCGAGGACGAGGACGA-----GCACGAGGAGACGTT----TCTGGAGTACCTCACCAATGGAATCAAGTCAATGTTCTGCTGCTTCAAATGA
i caeRem4.Crem_Contig24 I 1052 I 9373
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               362935 3325 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   191367 9373 -  1162296 I

a score=4206.000000
s ce10.chrX               366260 116 + 17718866 TACTTCGGTGAACGAGTAGTTGCCAAACTGAAACGCGTTTTGATAGCATCGATACAAGTCCAAGATCAATACTTGAATTCCTTTGCGGCGGTTTTCGGCAGTGAACTGAAAATATT
s caeRem4.Crem_Contig24   200740 116 -  1162296 TACCTCAGTGAAGTAGCGACACCCAAACTGGTAGGCTATTTGGTAGCGGCGAAGCAAGTCCAATGTAACGGTTTGGATTCCTCGGCGGCGATTTTTGAGGgtattctgaaactttt
i caeRem4.Crem_Contig24 I 9373 I 10574
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I

a score=0.000000
s ce10.chrX               366376 6356 + 17718866  
e caeJap4.Scaffold54       19984 13563 +   258924 T
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=4808.000000
s ce10.chrX               372732 345 + 17718866 GGAGAGTAAGTGTATTTCTTTTTCATATTATATACAATTAAATGAATATTTTAGCGTCAACCGTCAACAAAGACGTCAAGCTCAATGCCTGCTCTTCCGGGCATGGTTCAAACGAAATCCTGAGCTGTTCAAAGGTATGACTGATCCGGCAATCGCTGCATACGACGCTGCGGAAACTATCTATGTGGGATGTAGCTT---CTTTGACGTCGAGTTGACCGAGCACGTATGCCATCTGACAGAAGCTGACTTTTCGCCACAAGAATGGAAAATCGTTTCTCTCATCTCACGTCGGAGTGGGTCGACATTTGAAATTCGCATCAAGACAAATCCACCAGTGAGTTTCTT
s caeJap4.Scaffold54      254946 344 -   258924 GGAGAGTAAGTGTAGAAATATATTATAACAAGCACTAATCGACATAT-TTTTAGCACTAATCGACAAATAAAACGGAGAGCACAATATGTTTTGTTTGTGAATTGGTTTAAAAAGAATCCTCAATTGTTCAACGGTAACACAAATCCAGCTGTAGCCGCATACGATTGTGCCGAGACAATTTACATTGCA---AACTCAAACTACCAAGGAGGTCTAGAAGAGCACACGTTCAGTGTTACTGAGAAAGATGTTTCTAGTGACGACTGGTTCACTTTAACTCGCATCTCCCGACGAAAAAATATCACGTTTGAAGTTAGAGTGAAGGCCATAGGAAAGGTAAGtgtcat
i caeJap4.Scaffold54    n 13563 I 63
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               373077 62 + 17718866 GAGCCGTCTATATCTTATCGACGCTGAAAATTTGAAACAGGAATTTTGACTTCAAAAGTTCA
e caeJap4.Scaffold54      255290 63 -   258924 I
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=2544.000000
s ce10.chrX               373139 668 + 17718866  
s caeJap4.Scaffold54      255353 603 -   258924  
i caeJap4.Scaffold54    I 63 I 58
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               373807 59 + 17718866 GATGATAGACGCTCACCGCGTGATGGTGAAATTGATTATGACGAGAGAACTGTCTCACA
e caeJap4.Scaffold54      255956 58 -   258924 I
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=2265.000000
s ce10.chrX               373866 165 + 17718866 TTATCAAAGACAGTTTCAAGACGAACGCATTTCGGATGGTATGCTGAACACTCTCAAGCAGTCTCTCAAAGGATTGGATTGTCAGCCGATTCATCTTAAAGACTCGAAAGCCAATCGTTCAATCATGATAGACGAAATTCACACCGGAACAGCAGATAGGTCAGT
s caeJap4.Scaffold54      256014 151 -   258924 TTGCGAAAAAGAACCTCATAACGTAC-TATTTGGAA----AAAGTTAACA---------AGGCAATGAAAGGATTAGAATGCGAAAGTAGTCATCTTAAAAACGCAAAAGCAAATCGATCGGTTTTTGTTGACAAGCTTTATCACTGCAATGCGCATGAGTGAGT
i caeJap4.Scaffold54    I 58 n 58
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               374031 40 + 17718866 TTCTCCAAAAACACTTTTATGCGTATATAATACTAACAAA
e caeJap4.Scaffold54      256165 58 -   258924 n
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=3685.000000
s ce10.chrX               374071 1001 + 17718866  
s caeJap4.Scaffold54        6421  838 +   258924  
i caeJap4.Scaffold54    T 13563 I 21
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               375072 303 + 17718866 TTTTTTTTGTTGGATGAATTTATCCTACCAAATTGGGAGAGTGAATGAGGATGGCCACTAGGGCTGGTATCATTTGGGTCGCAATGCGATCTAGGTCGCCAGATCGCAAGTAGCATTGCGACCTAACACCTTATGTTGCAGGTCTACTTAGGTAGAGCACCACTTTACTAGCCACAAGCATTAAAGGTTAGTTGTGTGCGAGGACGCAAGGCATTAATTGTTACATTCGAAACTAAATACAAGAGTGTGCATGGAAAATTCTGAAATTTCTTATGTCAAAAACCGCATCACATTCTGATTCTG
e caeJap4.Scaffold54        7259  21 +   258924 I
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=5441.000000
s ce10.chrX               375375 190 + 17718866 AAATTGCTTTTTCAGACATTCTCAAATACTTTGAGGAGAAGCTTGGACAGCAAACCATTCAAATTTCTTCTGAAACCGCGGACAAATTCATGCGTGACCATGGTGGAAAACAAACCATTGACAATGTCATCAGAAAATTGAACCCCAAGTGTGGAGGAACTAACTTCCTAATTGA----CGTGCC--------------------------------CGAGTCGGT
s caeJap4.Scaffold54        7280 225 +   258924 aatttttttttctagacgTTTTAAAATactatgaagaaaaaatgggcCAGCAGACAATTCAAATTTGCACTGACACAGCCATAAAAATTATGTCAGAGCACGGTGGAAAACAGACATTGGAGAACGTGTTAAGAAAGTTTAATCCAAAAGCTGGAGGTACCAATTTT-TACTTGAACATTGCGCCAACAGTTTGTGGAACTTCAATCACTCCAGATGCGACTCGGT
i caeJap4.Scaffold54    I 21 I 61
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               375565 42 + 17718866 TGGCCATCGAGTCGTTTGCAACAATTCTGCTGAAATGAGAGC
e caeJap4.Scaffold54        7505 61 +   258924 I
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=15590.000000
s ce10.chrX               375607 594 + 17718866  
s caeJap4.Scaffold54        7566 593 +   258924  
i caeJap4.Scaffold54    I 61 I 13421
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=0.000000
s ce10.chrX               376201 5225 + 17718866  
e caeJap4.Scaffold54        8159 13421 +   258924 I
e cb4.chrX              20934358 12321 - 21540570 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=526.000000
s ce10.chrX               381426 34 + 17718866 TTCAACAAGTGAAGAACATGTTAAAATACGACGT
s cb4.chrX              20946679 34 - 21540570 ttcaaaaaaaaacacacacttTAGAATTCTCAAT
i cb4.chrX              I 12321 C 0
e caeJap4.Scaffold54        8159 13421 +   258924 I
e caeRem4.Crem_Contig24   200856 10574 -  1162296 I

a score=-1486.000000
s ce10.chrX               381460 15 + 17718866 GAAT-------------------ACGCATTAG-GA
s cb4.chrX              20946713 35 - 21540570 GAATTTTGTCATTAAagttatcataaaatcaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211430 16 -  1162296 gaac-------------------aaaaattagagg
i caeRem4.Crem_Contig24 I 10574 C 0
e caeJap4.Scaffold54        8159 13421 +   258924 I

a score=-1856.000000
s ce10.chrX               381475 23 + 17718866 ----TTTAAAAAAAAACAAGATATA--TG
s cb4.chrX              20946748 24 - 21540570 ----gatagacaaaaattggaaacga-tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211446 25 -  1162296 ----tccagagaaaaatggaaaaaaactt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       72486 29 +   193288 TTTAACAAAATACGAATTCGTGTGAAATT
i caePb3.Scfld02_254    N 0 C 0
e caeJap4.Scaffold54        8159 13421 +   258924 I

a score=74122.000000
s ce10.chrX               381498 239 + 17718866 TTAATAAAAATAACGCATCAAAAAGAAATTTAAGTGGCTGGTG--TGGCAGGAGTCTCGGTTGAGACTGGAAC------TGGGGCTTTCTCCTCGCGTGGCTCCACCGCGTAAATGGCGTGCTTCGCTTTGACTCCTGAGCTCGTCTTCTTCTGGCAACTCTCATGATCCTCATAACGGAGAACGTCGTAGAGTGGTCTCTGATGGATCATGCTTGCATTGTTGAGCACTTGCTTCAAGACGCCTCT
s cb4.chrX              20946772 233 - 21540570 acaacagaaat------tttgaaaaaaagttagtcAGTGGATT--CGGTAGGTG------CTGGTGTAGCAGCTACGCTAGCTGGTTTCTCTTCGCGTTCCTCAACAGCAAAAATGGAATGCTTGGCCTTCACTCCAGAGCTGGTTTTCTTTTGACAGCTTTCGTGGTCCTCGTACCGAAGAACATCAAACAATGGGCGTTGGTGGATCATGGATGCATTGTTCAAGACGGTCTTGAGAACGTTGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211471 230 -  1162296 ataataaaatt------ataatggaATCATTAGTTGGTTGATG--TGGTTGGAGT---GACTGGAGCAGGAGC------AGCgactttctcttctcttgGCTCCACAGCATAGATGGAGTGCTTCGCCTTGACTCCTGagctcgtttttttctgacaGCTCTCGTGGTCCTCATAGCGAAGAACATCATACAAGGGTCGTTGATGAATCAACGACGCGTTGTTCAAAACCGTCTTGAGAACGTTTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       72515 228 +   193288 GTAACAAA----------TTAAATCAATTTAAGCTGATGATTGAACACTTGGAG------TAGGTGTGGGTGTTGc---cgatgttttttcttccttcggCTCAACAGCGTGGATAGCGTGCTTAGCTTTGACTCCGgagcttgtttttttctgacagcTTTCGTGATCCTCGTAACGCAGAACATCGTAGAGTGGTCGGTTATGAATCAGAGATGCGTTGTTCAGGACAGTTTTGAGGACGCCgct
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       21580 218 +   258924 ttaaaaaaact-caacattaaaaaaaaattcaaat----------caacaaaaa------ttgaTTA------------GACTGGTTTCTCCTCCCGCTGTTCTATCGCATAAATAGAGTGTTTTGCTTTCACACCCGAGCTGGTTTTCTTCTGACAACTCTCATGATCCTCATAACGGAGAACATCATACAGAGGTCTTTGGTGAATCAACGAAGCGTTGTTCAATACTTGTTTTAGAACtgatct
i caeJap4.Scaffold54    I 13421 C 0

a score=1650.000000
s ce10.chrX               381737 4 + 17718866 GCAA
s cb4.chrX              20947005 4 - 21540570 GCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211701 4 -  1162296 Gcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       72743 4 +   193288 gaaa
i caePb3.Scfld02_254    C 0 I 1030
e caeJap4.Scaffold54       21798 0 +   258924 C

a score=-312.000000
s ce10.chrX               381741 46 + 17718866 AATTGAAAGTTTCACTTTAGTTACTCTACAGTTGCCTGTCAATTTT
s caeRem4.Crem_Contig24   211705 14 -  1162296 ---------tttcat-----------------------tcagtttt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeJap4.Scaffold54       21798  0 +   258924 C
e cb4.chrX              20947009  0 - 21540570 C

a score=-722.000000
s ce10.chrX               381787 103 + 17718866 ACATGTACCGCTGCTTTAACATAATTTTGGAATTTCGCTGACCATTAAGCAATCAAATTCTGTGGTACATATGAAAGATGCGCTAGACTGGTTTCATAACCAA
s cb4.chrX              20947009  60 - 21540570 -CAAGTATCTTTGGTCT--CGTACTATTAG--------TGACCAT------ATCAA--------------------------CAGGTTTGGATTTATTTCAGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeJap4.Scaffold54       21798   0 +   258924 C
e caeRem4.Crem_Contig24   211719   0 -  1162296 C

a score=-272.000000
s ce10.chrX               381890 15 + 17718866 TAACGTTATGTGTTG-
s cb4.chrX              20947069 15 - 21540570 TAATAGCAGATATTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211719 16 -  1162296 taacGCTGTGTTGTTG
i caeRem4.Crem_Contig24 C 0 I 4
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeJap4.Scaffold54       21798  0 +   258924 C

a score=-74.000000
s ce10.chrX               381905 17 + 17718866 CAAACGGTTAGCAGTGG
s cb4.chrX              20947084 10 - 21540570 AAA-------GCAGTGT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeJap4.Scaffold54       21798  0 +   258924 C
e caeRem4.Crem_Contig24   211735  4 -  1162296 I

a score=-8062.000000
s ce10.chrX               381922 134 + 17718866 AAAATTGTTTTTGAACGGATGAATTGCGTCTTGTAACACCCAGAAGTTG-----------TCTGTGGCTCAATCAAATGTAATGATCAACTAGACTAG-----TTTCATAACCAATAACGTTATTTC-----TACAACCTCATTAGTTTTTAGAC
s cb4.chrX              20947094 132 - 21540570 CACatcactttt------------tggtttttgcaggaaaatgaaaatgaggtAAGGTATTTTGTGGCTAGA-----------AATTAGTTATAGTTGCGTCCTTTTCTATACAATACTTTCAGCTCAGTAATAAATCTTCGTTTTGTCCTATAC
i cb4.chrX              C 0 I 6
s caeJap4.Scaffold54       21798  41 +   258924 aaaatttttttt------------------ttgcaaaa-----------------------------ttcaa-------------------------------GTTTCTAT--AACGATGT----------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeRem4.Crem_Contig24   211735   4 -  1162296 I

a score=0.000000
s ce10.chrX               382056 4 + 17718866 TATA
e caePb3.Scfld02_254       72747 1030 +   193288 I
e caeJap4.Scaffold54       21839 0 +   258924 C
e cb4.chrX              20947226 6 - 21540570 I
e caeRem4.Crem_Contig24   211735 4 -  1162296 I

a score=118415.000000
s ce10.chrX               382060 245 + 17718866 AA-------AACCTACCCAATTCTCAGATTTGCCCCGTCATCAGCACTGTTTGTAGTCCAAACTGAGATTTTTGAGCCCTTTCCACGGACGTTGCAGACAATTCCGCACAGACTTTCGATATCGTCGGAAAACTGCTCTCCGATCATCGCCATAAGAATTTCGGTCCAGATAGTGTCCATGATTTCCGGAGTGCGTCCTTTCTCGATAGTGATAAGCCATCTTCCTCCATTCTGATTTTGTGGCACCTGAAA
s cb4.chrX              20947232 249 - 21540570 AACTGAGTTAACTTACCCAATACGGAGGTTTGCTTCGTCATCACTACTGTCGGTGGTCCATACCGATATTTTTGAGCCTTTTGTACGGACATTACAAACCATTCCACACACACTTTCAGAATCTTGTTTGAATTGCTCTCCAACCATAGCCATCAAAATCTCTGTCCAAATCAAGTCCATTATTTCcgatgt---tcttttttcaattgtgaTCAACCAGCGACctccatttttgttttctttcacCTGTAA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   211739 245 -  1162296 AA-------AACTCACCCAATACGAAGATTGGCATCGTCGTCACTTGAGTTGGTTGTCCAAACCGAAATCTTCGATCCCTTTCCACGGACATTGCACACGATTCCGCACACACTCTCGATGTCTTGGGCGAATTGCTCGCCAACCATTGCCATGAGGATTTCGGTCCAGATGGTGTCCATAATTTCGGGAGTACGTCCCTTCTCGATGGTGATTAGCCAGCGACCACCGTTTTGATTCTCTGGGACCTGTAA
i caeRem4.Crem_Contig24 I 4 C 0
s caePb3.Scfld02_254       73777 245 +   193288 AA-------CACTCACCCTATGCGAAGGTTAGCGTCGTCATCGCTACTGTTTCTGGTCCAAACTGAAATCTTGGAACCTTTTCCACGAACATTGCACACAATCCCGCAGACACTTTCGATATCATCACCAAACTGTTCTCCAATCATTGCCATCAGAATTTCTGTCCAAATAGTGTCCATGATTTCTGGAGTTCTTCCTTTATCAATTGTAATGAGCCATCTTCCTCCGTTTTGATTCTCTGGCACCTGCAA
i caePb3.Scfld02_254    I 1030 I 994
s caeJap4.Scaffold54       21839 238 +   258924 -----------CATACCCGATACGAAGATTGCTTTCATCGTCGCTCCAGTTGGTAGTCCACACACTAATTTTGGAGCCTTTCGCACGAACATTGCACACAATTCCACATAACGATTCcatttcgtcaccaaattgcTCGCCAATCATAGCCATTAAAATCTCCATCCAAATAGTGTCCATTACTTCTGGAGTACGGCCTTTTTCAATGGTGATGAGCCAACGGCCTCCGTTTTGGTTTTCCGGGACCTA---
i caeJap4.Scaffold54    C 0 C 0

a score=-42513.000000
s ce10.chrX               382305  58 + 17718866 A----------------------------------------CACA------------TTGG-------------------------AATGTGTTTA-------------------------------TGAAAATA--------------------------------------------TTTAT----------------------------------------------------------------------------------------------------------------ACCACGTGT-----------------------------GCATCA------------------------------------------GCGCAAAAATC
s cb4.chrX              20947481  43 - 21540570 A----------------------------------------CTCA------------CTAATGT----------------------AATTTATTTT-----------------------------------GATATAGCTG--------------------------------------TTTTT------------------------------------------------------------------------------------------------------------------------------------------------------GTACCT-----------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   211984 393 -  1162296 ATTAGGTTTTTTAGAGAATGATAAAAAACTTTGAGATAGCGCTCAAAATGGGGCGTcccaatatttttcagatcgtttgggaaaacagtcaatttttgtcggagAGTAGTCAAACTCTCAAAGAACCTGAAGATATAGCTGGGGGACGCGACTTTCAAAGCTTCAAAAGTATAAGTTTATTTTTAACCCTTTTATGACATTCCGCGACGCGCGGGACAGGGACGTGGGACATCCCAACTCGTCCTAATTTGAGCGCTAGTTTGAGAGCTAATTAGAGTCATGAGGACGAACAAATCACCACCTGGCAAATGTTTCCATTCCGATAATAATCCACGTATCTCATACATTTTTAGGCTTATAAAATCGGAATTAATGTTTTTATgcagtttattt
i caeRem4.Crem_Contig24 C 0 I 2
s caeJap4.Scaffold54       22077  35 +   258924 -------------------------------------------------------------------------------------------------------------------------TGATATTGAATAAAGTGCAG--------------------------------------TTTAT----------------------------------------------------------------------------------------------------------------GCTAC---------------------------------CTATT------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       74022 994 +   193288 I

a score=91133.000000
s ce10.chrX               382363 194 + 17718866 AAAAAAAAAATTCACCTCCCACATTGGCTCAATTCCATCTCTGAAAACATTATAATCTGATGGTGGATTGAGCCCACTTGGCGGCTTAATAGAGTCGTGAAGTGCCCAGAACTCTCCGACGCTGCTAAAGGTTTTCACGTTCTTGAGACGCTCCTCCCACGATTTGTTGCGCTCGTCGTTCAGATACCTACAAA
s cb4.chrX              20947524 176 - 21540570 -----------------CCCACATTGGTGCAATTCCATCACGGAAAACATTGTAGTCAGATGACGGATTCAAACCACTTGGAGGCTTAATAGCATCGTGAAGAGCCCAAAACTCGCCAATCCCGGTAAAAGTGTGTACGTT-TTGAGTCTGTCCTCCCATGATTTGTTTCGATCATCCGACAGAAACCTAGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   212379 192 -  1162296 aaa--aaatgcttaccTCCCACATTGGCTCGATTCCATCACGGAAAACGTTGTAATCGGATGGTGGGTTGAGTCCACTTGGTGGCTTGATAGCATCATGAAGAGCCCAGAATTCATTGACGGAGTTGAACGTGTTCACATTCTTCAGACGGTCTTCCCAAGACTTCATGCGGTCGTCACTCAGGTACCTGAATT
i caeRem4.Crem_Contig24 I 2 C 0
s caePb3.Scfld02_254       75016 194 +   193288 aaatcaagaattcaCCTCCCACATTGGCTCGATGCCATCACGGAAAACGTTGTAATCGGATGGTGGGTTGAGTCCACTTGGTGGTTTGATGGCATCATGAAGAGCCCAGAATTGTTGAACAGTATTGAAGGTATTTACGTTCTTCAGTCGCTCTTCCCATGATTTGTTACGATCATCACTGAGatacctgaaaa
i caePb3.Scfld02_254    I 994 I 3891
s caeJap4.Scaffold54       22112 194 +   258924 TAATAAACAATGTACCTCCCACATTGGCTGAATTCCGTCACGGAACAACATGTAATCGGCAGGAAGATTGAGACCACTGGGCGGCTTGATAGCGTCAAAAAGAGCCCAAAACTCGGAAACGCTGGTAAAAGTGTGCACATTCTTGAGACGTTCTTCCCACTGTTTTAAACGTTCGTCGTTAAGATACctgtaaa
i caeJap4.Scaffold54    C 0 C 0

a score=336.000000
s ce10.chrX               382557 104 + 17718866 TTCGTTTATTCCTTATGTTCAAAAATTTATTCAAAATCTT----------GATGCCTAGGGAAAAGTGTCAAT--AGCTTACCACCAGGTCCAGTTGCGTTTCAGTTTGTAAACTG--
s cb4.chrX              20947700  93 - 21540570 --------------------ACGAACAc---tgatattttttagaaaagtacggtttaaaaaaaaattgaaaacgaacTTACCACCAAGACCAACTTCTTGCAAGTTTGTAAACTA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   212571  76 -  1162296 --------------------AGGAAATCATGTGAAATTTC-------------GCGCAGAAAATAGTT-------AACTTACCACCAAGTCCAGCTCCTCTTCAACTTGTAGACTG--
i caeRem4.Crem_Contig24 C 0 I 266
s caeJap4.Scaffold54       22306  68 +   258924 ---------------------------------atttttt-------------atgcaaagaaaagaaaacaa--tccGTACCACCAGGTCCATTTTCGACGAAGTT--TAAACTCTT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I

a score=300.000000
s ce10.chrX               382661 1 + 17718866 G
s cb4.chrX              20947793 1 - 21540570 G
i cb4.chrX              C 0 I 11389
s caeJap4.Scaffold54       22374 1 +   258924 G
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeRem4.Crem_Contig24   212647 266 -  1162296 I

a score=-579.000000
s ce10.chrX               382662 192 + 17718866 GTGGGAGATGGTTCCAGGAGCTGCGACTGGTTC------------------TTCGGACATTACTTGCTG---------------AAAAGAAAACAATATGTGTGGCAAAATATCAGGCAG-TAGTTTAATGTCGAAAAATTGAAATAGTCAAGTGCTAAATT-----AGGTAAAAACAAAT-----GTGATATTGAAACAGAGACACGCAAAAACCGATATTTCCCAAAATAAGTC
s caeJap4.Scaffold54       22375 229 +   258924 TTCG--AATGCTTTTAAAGGCTGTT-TTGGTTCCTGTTCATCCTGCACCGTTTCTTTCACTGATTGTTGCTCGTCCGTCATGCTGAAAGAATGGAATTCG-GTTAAATAACTTCATTTAATTATTTTGATTTAAAGATTGTAGAAAATTTAA---CTCACTTtgtagaagaaaaaataaattataggTATTTTTGGAACAACgtaacagaacaaaaaaaacctcctAAAatttgtc
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212647 266 -  1162296 I

a score=4874.000000
s ce10.chrX               382854 29 + 17718866 TGCAAACACCGTGACG-GAACAATGCAGAC
s caeRem4.Crem_Contig24   212913 29 -  1162296 TGCAAACACCGCGACG-CAAAACTGCAGAC
i caeRem4.Crem_Contig24 I 266 I 13346
s caeJap4.Scaffold54       22604 30 +   258924 tgcaaacaccgcgttgcgaACATTGCGGAC
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I

a score=100.000000
s ce10.chrX               382883 1 + 17718866 G
s caeJap4.Scaffold54       22634 1 +   258924 G
i caeJap4.Scaffold54    C 0 I 594
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=0.000000
s ce10.chrX               382884 1663 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       22635  594 +   258924 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=2392.000000
s ce10.chrX               384547 85 + 17718866 GACTTTTGCCAGTCGATGAAGCTGCAAAGGGTGATGTGGGAAACTCCAAGACGATTTGCAATCTGAAAATTAAT-----TAGAAATTGTT
s caeJap4.Scaffold54       23229 88 +   258924 GACTTTCTCCAGTTCACAAAGCTCATCAAAGTCATGTAGGAGACTCCAATATCGGCTGCCACCTGTAA--TAATGTATATAAAAAATGTT
i caeJap4.Scaffold54    I 594 I 2013
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=0.000000
s ce10.chrX               384632 673 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       23317 2013 +   258924 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=5040.000000
s ce10.chrX               385305 501 + 17718866  
s caeJap4.Scaffold54       25330 507 +   258924  
i caeJap4.Scaffold54    I 2013 I 62
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=0.000000
s ce10.chrX               385806 920 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       25837  62 +   258924 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=11862.000000
s ce10.chrX               386726 471 + 17718866 TCCCCGATTTTCCACGATCCACGATCCTTTGTCGAAAGCTTCCTTCTCCAGTTTTCATATTGTGCACGAATGTAGGAAGGTGCTAAGTCAGTTTTCTCCATTATCTGAAAACA--AAATTTTTTG----TTCAAATGCTTTATTCATCATATTTGATTTATTTTACCACATGAACATATCCAAGAGTGAACCTTTTCCGTGAGAGAAGGTGAAGTTCAATCTCGTCCTCCAATACAGTTTGCACTTCGTTCGTAATTTCTATGTAGGAAGTAGTATCCGTTTCACGAGACAAAAACTCCCGAATTCGACAACACGCGTCATTTGTCTCACATTCAATTTTTCCGTCTTTTCTAATTGTCTCAAAATTGTCAAAAATTGTCTTGTATCGTATTCCACACCGTTCGGATAGTTTCTGCATTCCAATCGCTGTTGGGTGGCAGTTTCTTGCAAAACTAGCGTTCAACTCTCGTCTCACTT
s caeJap4.Scaffold54       25899 467 +   258924 TCCTTGTTTTTGTACTCATCTCTATCCTTAGTTagcattttctttttccaattttcgtattgACCTCTTATGTAGCTAGCCGGAAGATCAGTCTTTTCCATTATCTGAAAATATTAAATTAGCTGACGATTAAAAT----CGTTAATTGTATTTA------CGTACAATGTGAACATATCCAAGGCTGAATCTTTTACGGGAGAGCAAGTGTAGTTCAATTTCCTCTTCCAATTTAGCTCGGATGTCTTCTTTGACTTTATTGTAGGTAAGAGGCTCGTTGTCTCGCAcgaaaaacgtgcgaattcttTCACAAGCATCATCCTTCTCGCATTTGACTCTTTTCGCAATCCGCCGATTTTCAAAGTCATCAAAAACAGTCCGATATCTGACGCCACAAGATTCGGCAATCTTGACCATTTCGGTGGCGTTTGGATGCCTGTTTTCTTCAAACCGTTCGCTCAATATTCTTTTGATTT
i caeJap4.Scaffold54    I 62 I 15135
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=0.000000
s ce10.chrX               387197 17949 + 17718866  
e caePb3.Scfld02_254       75210  3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20947794 11389 - 21540570 I
e caeRem4.Crem_Contig24   212942 13346 -  1162296 I

a score=455.000000
s ce10.chrX               405146 5 + 17718866 TTTTT
s caeRem4.Crem_Contig24   226288 5 -  1162296 TTTTT
i caeRem4.Crem_Contig24 I 13346 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20947794 11389 - 21540570 I

a score=27744.000000
s ce10.chrX               405151 200 + 17718866 TTCCAGATTGTGACCATTATCGTCACCAACTCAAATGCCTGGGTAACCGTCCCATCAGAGACCAAAGTATCCATCTACGACTTCTGTAGCTTCAAGGTACCATGCGCGCCGGGACATTTGTGCCACGAAGGTTTTTGCATTCAGCAGCAGTC---------CTTTTCATCTTTTCCACGATCAATGTATTTTCGTTCTCTTTTCCGCCG
s cb4.chrX              20959183 209 - 21540570 tttcagattgctgcctttttttcgaacatcTCCCAAGCAATGATCGCTCTACCATCCGAGTCAAAAGTCTCCATTTACGACTTCTGCGGACCAAAAGTTCCGTGTGCTCCAGGACACCTCTGCCACGAAGGGTTTTGCATCCAACAACAATCATACGGCAGTTTCCCTTCTTTCCCAAGATCACTGTTCTATCGTTCTTTGTATCGCcg
i cb4.chrX              I 11389 I 3531
s caeRem4.Crem_Contig24   226293 206 -  1162296 CTCCAGATCGCTCTCATCTTTGTTAACATCTCGCAAGCTCTTGTGACTTCACCATCTGAGACCAAAGTGTCCATCTACGACTTCTGTAGCTACAAGGTTCCATGTGCTCCAGGACATCTGTGCCATGAGGGATTCTGCATCCAGCAACAGTCATATGGATCATTCCCATCATTTCCAAGATCAATGTTCTATCGTTCTCTTTACCG---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=1061.000000
s ce10.chrX               405351 89 + 17718866 GCGCTGAGTGCATCTTTTTCAAATAAATAATTTTACAACCTTCATTTTT---TACACTGGGACGAGCATAACAAACAAATTTGGATATCCAT
s caeRem4.Crem_Contig24   226499 81 -  1162296 TCGTTGA--GCACTTTTCTTGAATAAAT-------CAATCATCAATGTTACCTATTCTCCAACAAACTTGAC--ACAAAGTTGActtctcat
i caeRem4.Crem_Contig24 C 0 I 24665
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20959392 3531 - 21540570 I

a score=0.000000
s ce10.chrX               405440 884 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20959392 3531 - 21540570 I
e caeRem4.Crem_Contig24   226580 24665 -  1162296 I

a score=580.000000
s ce10.chrX               406324 106 + 17718866 TTTTTTGAAATT----TCAAAAAAAATTTTTGTGAAAAACGAGTCAGTCACAAGTAACAATACGAATTGTCAGCTAGTATTATATTATAAACATCTGATAAAACTGTTTT
s cb4.chrX              20962923  99 - 21540570 TTCCTTGAAAttattctacaaaaaaaagtttatgttAATCGA--------CAAGTGCCAGAATATTTGATCAAAGAGGATTGCA--GGAAAAATTacacaaaaaagttt-
i cb4.chrX              I 3531 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   226580 24665 -  1162296 I

a score=-1672.000000
s ce10.chrX               406430 60 + 17718866 AAATTCTTA-CATTTTTTTGTAATTTCAATCATAATGCCAACTTTATT--------GCAAAAAACGCAT
s cb4.chrX              20963022 44 - 21540570 ----------cgtGTATTTGAAATAAACACAACA--------TTTATTATCGATTGATAAAA-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5004985 47 - 33334924 AACTTCttattgttctttttgaatatcaaaaaca----------------------ataaaagtTGTGT
i caeSp111.Scaffold629  N 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   226580 24665 -  1162296 I

a score=30732.000000
s ce10.chrX               406490 168 + 17718866 TCAGCAAATAGGGATTGAACCACAAAGAAGAGAAATTATTTGAGAAATAGTGCTTGTGAGCTCGTTTTGGTCGTTCACTTGGGTGCTACACTTTGCGATTGCATTTAGTTGTGTCATATTTGCACTTGTTCCGAGACCAATTGCGAACGTTTCCAGACCAAGCTGAAA
s cb4.chrX              20963066 168 - 21540570 TCAGCAGACTGGATTGGTTCCacatatatttgaaattatttgaaaaactacgTTATAGAGAGCACTCTCACTCATAACTTTTGTAGAGCATTTCGCTATGGCAGATAATTGAGACATGTTTGCAGTATTTCCAAGGCCAATCGCAAACGTTTCAAGACCAATCTATAA
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24   251245 168 -  1162296 TTAACAAACTGGAGTTGTTCCACAAAGCGATGAAATTATTTGGGCGACGGTTTTGTCTAAAGCAGTTGGGGTAGTTACTTGGCTTGTGCACTTGGCAATCGCAGTAAGTTGAGACAGGTTGGCGGTGGGTCCGACAGCAATGGcgaaagtttcgaaaccaatctgaaa
i caeRem4.Crem_Contig24 I 24665 C 0
s caeSp111.Scaffold629   5005032 167 - 33334924 -TAACATTGAGGTGTTGATCCACAGAGAAGAGGAACAACTTTTGATACAGCGGCGGTTAGATCGGCTTGGCTGTACACTTGGGTCGAGCATTTAGCAATGGCAGACAATTGAGCCATGTTGGCAGTGTCACCAAGACCAATCGCGAAGGTTTCTAGTCCAGCCTGGAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-547.000000
s ce10.chrX               406658 4 + 17718866 --TGAA
s caeRem4.Crem_Contig24   251413 4 -  1162296 --tgaa
i caeRem4.Crem_Contig24 C 0 I 1042
s caeSp111.Scaffold629   5005199 4 - 33334924 CATA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963234 10 - 21540570 I

a score=199.000000
s ce10.chrX               406662 20 + 17718866 ATC------AAACCAAACTTTCAAGT
s caeSp111.Scaffold629   5005203 26 - 33334924 ATTCTTTCAATGCTGGATTTTCAGGT
i caeSp111.Scaffold629  C 0 I 65
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963234 10 - 21540570 I
e caeRem4.Crem_Contig24   251417 1042 -  1162296 I

a score=0.000000
s ce10.chrX               406682 833 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963234  10 - 21540570 I
e caeSp111.Scaffold629   5005229  65 - 33334924 I
e caeRem4.Crem_Contig24   251417 1042 -  1162296 I

a score=371.000000
s ce10.chrX               407515 19 + 17718866 TTTAAAAATAAGAAAACCA
s cb4.chrX              20963244 19 - 21540570 TTGAAGAGcgaaaaactga
i cb4.chrX              I 10 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5005229 65 - 33334924 I
e caeRem4.Crem_Contig24   251417 1042 -  1162296 I

a score=38.000000
s ce10.chrX               407534 1 + 17718866 C
s cb4.chrX              20963263 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5005294 1 - 33334924 C
i caeSp111.Scaffold629  I 65 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   251417 1042 -  1162296 I

a score=42121.000000
s ce10.chrX               407535 184 + 17718866 AACCAACCTTGTGAAGATTCCTAGCTGCGGGCGCTGGATCAGAGAAACCATTCTCTTTTCCCTCTGAAACATTCCCTTTGTCCCATCCCTGAGAACTTAGCAACATTAAAAACTTTCTCACAGGCGCTGGTCTGAATGGAGCGGAGTTGTTCTGCAAGACGATGTAGTCCATGACCCTTAAAAT
s cb4.chrX              20963264 181 - 21540570 aaattaccTTCTGAAGAGACTGAGCAGAATTTGTAGGATCCTGGAACCCTTGCTCTTTTCCCTCCACAAAGTTTCCTTGATCCCATCCTTGTGAACTCAAAAGGATAAGCAATTTTCTAACCGGAGCTTGGCGTAATGGGGCGGTGCTATTTTCAACAATAATGAAGTCAAGAACGCTAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   252459 184 -  1162296 aaCTTACTTGTTGCAATGCCTTTGCAGAGGCTGTTGGATCTGGGTATCCGTTTTCCTTTCCATCTGACACGTTTCCTTTGTCCCATCCTTGAGAACTTAGCAGAACAAGCAGTTTTCGGGCTGGCGCAGGGCGCAGTGGGGCAGTGTTGTTCTCGGCCACAATATAGTCGaagactctgaaaat
i caeRem4.Crem_Contig24 I 1042 I 410
s caeSp111.Scaffold629   5005295 184 - 33334924 AACATacctgtttcaaatttttcgctGCAGTTGTTGGATCCTGGAAACCGTTCTCCTTTCCTTCCGATACATTTCCTTTGTCCCATCCTTGCGAACTCAACAAGACTAACAGCTTCCTCACGGGGGAAGCTCTCAATGGAGTTGTACTGTTTTCAGAGACAATGTAGTCGAGGACGCTGAAAAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-3532.000000
s ce10.chrX               407719 35 + 17718866 ------------------TTCCAAGTTTAGTTTCAATTATTGGTAAATCGGTA--------------
s cb4.chrX              20963445 35 - 21540570 ----------------CAAGCAcagtttaaaaataatttt--aaaaaacaatt--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5005479 67 - 33334924 CGAGGTTTTCTGATTGTTGGGAGatttgaaaagtgatttttgaggAGTTAATTATATTCGTGGTTTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   252643 410 -  1162296 I

a score=56063.000000
s ce10.chrX               407754 226 + 17718866 --------TAAACTTCTTACGATTGAATGTTGTTCCCGTTGATTCCGGTGTATCCCAAACTGAATAAATCAGCAAGTTTGTTCTGATAAGCTTCAAACGTGTCGAGTGTGTTGAGATCTCCAGAAAAATGAGAAATAGCATCGTATGTACCCAAAAGAATGCGAGAGTGGTCATGTCCAATAGAAATTGCGTTCCCAATAGTATTCACTGCACCGACAGTCTGAAAAAAAACGA-------------------
s cb4.chrX              20963480 226 - 21540570 -----ttt---agatctCACGATTGAACATTGTTTCCGTTGATTCCAGTGTATCCCAAACTGAAAAGGtcagctattttttcttgatatctATCGAAGCTATCGATGGTATTCAGGTTCCCATTGAAATGTGATGTAGCGTCGTATGTTCCAACAATTATCCGGGATTTGTCTTGTCCGATGGTTATTGaattaccaatttttttgacagcTCCGATTGTCTACATATCATCAA-------------------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24   253053 234 -  1162296 taaacttccaaaaaacttACGATTGGATGTTGTTTCCATTGATTCCGGTGTATCCCAAGCTGAACAGATCGGCGATTTCTTCTTGATATTTGTCGAAGCTATCAATTGTGTTGAGATCCCCATTGAAATGAGAAGTAGCATCGTAAGTTCCCATTATAATTCGTGATCTGTCCTGTCCAATGTTGATTGCGTTACCAATTGATTTGAGTGCTccgattgtctgaaaataaatga-------------------
i caeRem4.Crem_Contig24 I 410 I 456
s caeSp111.Scaffold629   5005546 245 - 33334924 --------TCAGTTACTCACGATTGAATGTTGTTTCCATTGATGCCAGTGTATCCCAAACTGAATAGATCGGCTACCTCCTCCTGGTATGTGTCAAAGTTGTTGATAGTGTTGAGATCTCCAGAGAAGTGAGCAGCGGCGTCATAAGTGCCCAGAACGATTCGAGAGCTGTCTGCACCGATAGTGATGACGTTTCCGATAGTTTTCACAGTGGCGATGGTCTGAAATCCagaaatgtttatttttagaaagcA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-5334.000000
s ce10.chrX               407980 30 + 17718866 AAAAG--TGGTTCACTTATTTTTAA-----------------GAAATGT-------------------------------------------
s cb4.chrX              20963716 18 - 21540570 ------------------------------------------gaaagatttttaa-----------------------------atcaa---
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold629   5005791 92 - 33334924 AAAAGCTTAGTTCTTTTGATCATAATAAGAAGCTGACTCAAAGAAAGGTTTCAAAGAGAgggtttttttgatattagCTTTTTCATCAAAGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   253287 456 -  1162296 I

a score=28049.000000
s ce10.chrX               408010 150 + 17718866 -------CCTACTGCATAATACATCTCATCCGAAATGCTGCCTGAAGAGTCAAAGGCAATTATAACATCGAGCATCGCAGTGCTTGGGTCACATGTTTTGACTGTTGT------GGCAGTTGTGAATTCTAGTGTTGGAG---AAGCTGCTGATGGTGTAGCTAAA
s cb4.chrX              20963734 156 - 21540570 -------CTCACAGAATAGTACATTTCTTGTGAAATGGTATCAGAAGAGTCGAACGCTATGATGATGTCCATTTTGGCAGTGGATGCATCACACGGTTTTGGAGTTGTCCATGAAGCAGTTGTGATTATTTGAGTGGATG---GGGCTGGTGGTGCGGTCACTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   253743 156 -  1162296 -------cttaccGCATAATACATATCCTCTGTGATAGTGTCAGAAGAATCAAACGCCACAATAATATCTACAGTAGCTGTTGTGGCATCACATGCTTTGGGTGTGGGTCCAGCAGGAGTTGTAACTTCTGGAGTGGTTG---AGAAAGATGGTTCGGTTGCTGAA
i caeRem4.Crem_Contig24 I 456 C 0
s caeSp111.Scaffold629   5005883 166 - 33334924 CCAAACACTTACTGCGTAGTACATTTCCTCCGTGATTGTATCTGAAGAGTCGAAAGCAATGAAGATGTCCACTTTGGCAGTTGATGGGTCACATGGTGTTAAAGTAGTTCCTGGTGTAGTGATAGCGGCTGGCGTAGTTGGTTGTGGTGATGGCGGAGTGGCTAAA
i caeSp111.Scaffold629  C 0 I 225
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=273.000000
s ce10.chrX               408160 1 + 17718866 A
s cb4.chrX              20963890 1 - 21540570 A
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   253899 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5006049 225 - 33334924 I

a score=105.000000
s ce10.chrX               408161 7 + 17718866 ACTAGAG
s caeRem4.Crem_Contig24   253900 7 -  1162296 TATAAAG
i caeRem4.Crem_Contig24 C 0 I 89
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963891 38 - 21540570 I
e caeSp111.Scaffold629   5006049 225 - 33334924 I

a score=0.000000
s ce10.chrX               408168 945 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963891  38 - 21540570 I
e caeSp111.Scaffold629   5006049 225 - 33334924 I
e caeRem4.Crem_Contig24   253907  89 -  1162296 I

a score=247.000000
s ce10.chrX               409113 10 + 17718866 ATGTCTATAA
s caeRem4.Crem_Contig24   253996 10 -  1162296 ATAACCAAAA
i caeRem4.Crem_Contig24 I 89 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963891 38 - 21540570 I
e caeSp111.Scaffold629   5006049 225 - 33334924 I

a score=1448.000000
s ce10.chrX               409123 12 + 17718866 -AACACCTACGTT
s caeRem4.Crem_Contig24   254006 13 -  1162296 AACAACTTACGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5006274 12 - 33334924 -aATACTCACGTT
i caeSp111.Scaffold629  I 225 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20963891 38 - 21540570 I

a score=126777.000000
s ce10.chrX               409135 373 + 17718866 GTGGGCGGATCTCCCCATCACAATGAACCGTGAATGTCCTTCTGAACGGGTGCCCCTCAAAATCAAGTCCATCAAGGGCTACCACAAATTGATTGCGATAACACTGGAATGTGTACTCCGAAATGAATGGATAGGCACATCCATCACGCTTGATAAGAGGGCTTGCCCAAGCGATTCTTGTCTCGTCCAAATCGAATATCTGAGCATAAGTGAGTGTACCTCCTTCTGAGATATCTGCTACTATTGCGTTCTCAAAATCTCCGCCTCGGGGAAACAAAACGGCTCCTCCATCGTGATAGCCTTGATCAGATGCAACGTCTTGTGTGAATCCAAGATCGACTTCTAGTTTTGATTGAGTTCGGATATTGAGCTG
s cb4.chrX              20963929 373 - 21540570 GTGGTCTAATTTCACCATCACAATGTATCGTAAACGTTCTTCTGAATGGATGTCCTTCAAAATCGATTCCATCCAGATCAACaacaaattgatttttatagCATTGGAAGGTATTCGCCGACACATATGGATAGGCACATCCATCTCTCTTTATCAATGGACTAGCCCACGCTATCCGAGTTTCTGCCAAATCATAAATTTGAGCGTAACTCAAAATGGCTCCAGATGAAATGTCAGCAACAATTGCGTTTTTGAAGTCCCCTCCTCTGGGATACAAAACAGCTCCTCCGTCATGGTACCCACCGTCTGTTCCGACGTCTTGTGTGAAGCCAAGGTCGACTTCAAGCTTTGATTGGGACCGTAAATTGAGCTG
i cb4.chrX              I 38 I 1253
s caeRem4.Crem_Contig24   254019 373 -  1162296 GTGGACGTATATCTCCATCACAATGAATTGTGAAAGTTCTTCTGAATGGATGTCCCTCGAAGTCGAATCCATCAAGTGCCACCACAAATTGATTCCGATAGCATTGGAAGGTATACTCCGACACGAACGGGTATGCACATCCATCTCTCTTGATCATCGGACTAGCCCAAGCGATTCGTGTCTCTGCCAAGTCGAAGATCTGGGCGTAGGTTAGTGTTCCTCCTGTTGAAATATCAGCGACAACTGCATTCACAAAATCTCCTCCTCTTGGGAACAAAACTGCTCCACCGTCATGATAACCACCATCTGAAGCAACATCCTGAGTGAATCCGAGGTCGACTTCGAGTTTTGATTGGGAGCGGatattgagctg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5006286 373 - 33334924 GTGGTCTAATCTCTCCATCACAATGAATTGTAAACGTTCTTCTAAACGGATGCCCCTCGAAGTCGAATCCATCAAGAGCCACGACAAACTGGTTCCGATAGCATTGGAAAGTGTATTGTGACACATATGGATAGGCACATCCATCTCGTTTGATCAACGGACTAGCCCATGCAATACGGGTTTCTGCCAGATCGTAAATTTGGGCATAAGTAAGAGATCCTCCAGTTGTTATATCCGCTACAATGGCATTTTTGAAGTCTCCACCTCTTGGGAAAAGAACGGCTCCTCCGTCATGATAGCCACCATCCGAAGCGACGTCTTGAGTGAATCCGAGATCTATTTCGAGTTTTGATTGCGAGCGGATGTTCAACTG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-518.000000
s ce10.chrX               409508 3 + 17718866 CAA-
s caeRem4.Crem_Contig24   254392 3 -  1162296 -aaa
i caeRem4.Crem_Contig24 C 0 I 739
s caeSp111.Scaffold629   5006659 3 - 33334924 CAG-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20964302 1253 - 21540570 I

a score=-955.000000
s ce10.chrX               409511 71 + 17718866 TTTTTTAGATTTTCGGGATATAAATATAACTTAAATCTACCAGACAGACACGCCTGTTTTCCAAATTATGA
s caeSp111.Scaffold629   5006662 30 - 33334924 ------atgttttcag----ttattttagTTTGAA-------------------------------TATCA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20964302 1253 - 21540570 I
e caeRem4.Crem_Contig24   254395 739 -  1162296 I

a score=-405.000000
s ce10.chrX               409582 3 + 17718866 -AAT
s caeRem4.Crem_Contig24   255134 3 -  1162296 aaa-
i caeRem4.Crem_Contig24 I 739 C 0
s caeSp111.Scaffold629   5006692 3 - 33334924 GAA-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20964302 1253 - 21540570 I

a score=87407.000000
s ce10.chrX               409585 364 + 17718866 AACATACCGTGCAAGGGCCACTGTTGCTCATCCCATAGTCGACATCAATTGTCCAAACTCCTGGCTGCTCTCCGGTTTGCTTGAAAACCCTAACTGTGTTGGTTTTTGATTTCACAATTGAGAATGAATCAACTTGTTTGTCTGAATTTAAGTATATGAAGATTTTTTGATTTTGGTCATTGTGGTATCATATAAATTTGATTTAAATCGAACGCCTTAAACGTTTTTACACAACAGAACAACTTACTGTCAACATCATAAATTCCAATTTCTGGTGCGGTTTGCGCAAAAATATCAATGATTGCTTCGGTTCCATTAGCATCAAGCTGAATGTAGTCTTGATAATTCGAACAGTTGCTAGAAA
s cb4.chrX              20965555 304 - 21540570 AACATACTGTACATGGTCCACTATTGCTCATTCCATAATCTATATCAATTGTCCAGACTCCCGGTTGATCTCCAGGTTGCTTGAATGCTTTTACAGTATTCGTTTTTGAGTTGACAATCGAGAACGAATCTACTTGcttatctgaaattct----------ctgTCATGTTTTC--------------CACAtaaatt-----------------------------------gcgaaaaatcgaaCTATCTGTATCATAAACTGCAATTTCTGGAGCAGATTGAGCAAAGATGTCAataattatttcggttccatTGGCATCTAATTGAACAAAGTCTTGGTAGTTGGAACAATTGCTGAAA-
i cb4.chrX              I 1253 C 0
s caeRem4.Crem_Contig24   255137 308 -  1162296 aactcactgtgCACGGTCCACTATTAGTCATTCCATAATCCACATCAATTGTCCATACTCCTGGTTGTTCTCCATTTTGCTTGAATGCTCTCACTGTGTTGGTTTTAGACTGGACAATAGAGAACGACTCGACTtgcttgtctgaaaatta----------aacttttgCTTTC--------TATTCACATATCAATT--------------------------------------AAACAACTCACTGTCGGTATCAAGAACTGCAATTTGAGGCGCTTGTTGTGCAAAAATATCGACAATTGCCTCTGTTCCATTAGCATCAAGTTGAATGTAGTCTTGGTAGGAGGAGCAGTTGCTGAAAA
i caeRem4.Crem_Contig24 C 0 I 859
s caeSp111.Scaffold629   5006695 306 - 33334924 AACTTACTGTACACGGTCCACTATTGCTCATTCCATAGTCCACATCGATAGTCCATACTCCTGGTTGTTCTCCTTTTTGTTTGAAGGCGCTCACAGTGTTAGTCTTGGATTTTACAATGGGGAATGAGTCCACTTGCTTGTCTGAAACgga----------attatttgatttt--------------gggttgaattt----------------------------------ggaaaaaaactcactgtcaatatcaaaaactgCGATTAGAGGAGCGGTTTGGGCGAAAATATCGACAATGACCTCCGTTCCATTGGCGTCGAGTTGGATGTAGTCTTGGTAGTTTGAACAgttgctgaaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-678.000000
s ce10.chrX               409949 18 + 17718866 AAAT---AAATGTTAAATTTA-------
s cb4.chrX              20965859 14 - 21540570 -------GTGTGTTGAATTTA-------
i cb4.chrX              C 0 I 779
s caeSp111.Scaffold629   5007001 26 - 33334924 --atgataaaaattgaattttgtgaaga
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   255445 859 -  1162296 I

a score=652.000000
s ce10.chrX               409967 36 + 17718866 AAGGAGCATAGATTTTTCCTAAACCAAATTTTTTCG
s caeSp111.Scaffold629   5007027 33 - 33334924 taaaagcaaaaactgatcataaattg---tttttcg
i caeSp111.Scaffold629  C 0 I 927
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20965873 779 - 21540570 I
e caeRem4.Crem_Contig24   255445 859 -  1162296 I

a score=0.000000
s ce10.chrX               410003 371 + 17718866 CTGCGAGACCAATAGCCTACATATTTTCTTATTCGTCTCTTTTTCCCTCTACAATTGAGGACACCGTTTCTCATGCGACTCTCATTCTCAAAGGTGTAAAACGAATCTCTCATCATCACACACTGGCAGAAAGGGCGGGTGAACGAATCTCTCGTCGTCGCGAGTGTGTTCTTTCAATACCAGGGAGAACCAGTGCCTGCGTCACTAATAGGTCTCTCTGTAGCGCTCGCCACTGTGGAGTATACATCTTTCCCCGCTCTGCCTACTATCGTTTCTCTGGTCCCTCTCTGTCTCATTGTTCATCAAGCGCACCCTTGTTTCTGCAGCCTCTCAAAAAGCGGAAAATGTATTGGAATGTCTACGTCCGGCTG
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20965873 779 - 21540570 I
e caeSp111.Scaffold629   5007060 927 - 33334924 I
e caeRem4.Crem_Contig24   255445 859 -  1162296 I

a score=328.000000
s ce10.chrX               410374 7 + 17718866 AGTGAGG
s caeSp111.Scaffold629   5007987 7 - 33334924 AGAGAGA
i caeSp111.Scaffold629  I 927 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20965873 779 - 21540570 I
e caeRem4.Crem_Contig24   255445 859 -  1162296 I

a score=44740.000000
s ce10.chrX               410381 103 + 17718866 GAGAGCGTGGGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTATCGCTTTTGCAATGATTTTG---
s cb4.chrX              20966652  99 - 21540570 GGGAGTGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTactgtttttgc----tttttg---
i cb4.chrX              I 779 I 25
s caeRem4.Crem_Contig24   256304  99 -  1162296 GAGTGTGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTATCGTTTTTTG----CTTTTG---
i caeRem4.Crem_Contig24 I 859 I 543
s caeSp111.Scaffold629   5007994 102 - 33334924 GGAAGTGTCTGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTATCattttgat----gttttattg
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-7301.000000
s ce10.chrX               410484  53 + 17718866 ------AGGGAATTTCGAGT----------------------------TGTTAATAGGCCCGTCT----------------------------GCATAACATTT------------------TTTTGTCAAAA-------------
s cb4.chrX              20966776 144 - 21540570 aagaagagaaaagtagTGGCAGAAACAAAAGTAACTaactttccttctttttgtcAAAACTACTTTTGAATTCGAAACCCTTTTTCTGGAGGAACAAAGAATTT--GAATCTACTATAGTGACATtgcgaaaaattatttaaacgA
i cb4.chrX              I 25 C 0
s caeSp111.Scaffold629   5008096 110 - 33334924 ------aaaacacTTAGGGTGTAAAAGAA-------------------TATTATGAAGCATGATTTGGAATG--------TTCAGGTGAATTAACAAGATATTTTCGGA---GATATACAGATTTTGTTaaacaattctgaaaaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   256403 543 -  1162296 I

a score=170232.000000
s ce10.chrX               410537 550 + 17718866  
s cb4.chrX              20966920 550 - 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24   256946 550 -  1162296  
i caeRem4.Crem_Contig24 I 543 C 0
s caeSp111.Scaffold629   5008206 566 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-2449.000000
s ce10.chrX               411087 56 + 17718866 TTGGTTTTTATTGTTTTCTTTTTCATTTTTCGAAAGCTGTA--GGTCATAGATTAAGT---------------------
s caeRem4.Crem_Contig24   257496 70 -  1162296 -TTACACATTtagcattttttttcactattctcagattttcagaaagttaatgtgcattttttggttattt--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5008772 77 - 33334924 TTTGTATGtataatataattttttaataccAACTGGTTTTC--TATCTTAATCTGAGCTCAACTGTGAtttgattacgg
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20967470 33 - 21540570 I

a score=48127.000000
s ce10.chrX               411143 160 + 17718866 ---------------TACCTGAATAGCTGTCAATACTCCATTAATTGTCTTTTCAATATTATCGTTGACAGATTTCATTATGTCATTGTTAGAACCGTCAAGCACGACAATAAATGTACGATGCACATCTCCAATAGCTGGCACATCAAGTTGGTTTCGATCGCAAATTGCTGAA
s cb4.chrX              20967503 160 - 21540570 ---------------TACCAAAACTGAACTTAGAACGCCGTTCAGTGTCTTCTCAAAGTTATCATTAACTGACTTCATGTCGCCATTGTTCGAACCATCTAACACAACGACAAATGTGCGATGGACATCTCCAATAGCAGGGACGTCTAGTTGATTTCTGTCACAAATtgctaaa
i cb4.chrX              I 33 I 35
s caeRem4.Crem_Contig24   257566 160 -  1162296 ---------------tacCTGAATCGAGTTCAAAACACCATTCAAAGTCTTCTCAAAGTTGtcatttacagttttcatcGCATCATTATTGGTTCCATCCAAAATCACGATAAATGTACGTTGAACATCTCCGATAGCAGGCACATTGAGTTGGTTTCTGTCACAGATTGctgga
i caeRem4.Crem_Contig24 C 0 I 34
s caeSp111.Scaffold629   5008849 175 - 33334924 tatttaACTTGATCTAACCTGAATTGAGCTCAAAACACTGTTCAAAGTAGCCTCAATATTGTCATTGACAGTTTTCATCGCATCGTTATTGGTTCCATCGAGAACCACAATGAACGTCCGTTGAACATCTCCGATAGAAGGCACATCCAGCTGGTTTCGGTCGCAAATCGCTGAA
i caeSp111.Scaffold629  C 0 I 30
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=0.000000
s ce10.chrX               411303 780 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20967663  35 - 21540570 I
e caeSp111.Scaffold629   5009024  30 - 33334924 I
e caeRem4.Crem_Contig24   257726  34 -  1162296 I

a score=151.000000
s ce10.chrX               412083 3 + 17718866 TGA
s cb4.chrX              20967698 3 - 21540570 TAA
i cb4.chrX              I 35 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5009024 30 - 33334924 I
e caeRem4.Crem_Contig24   257726 34 -  1162296 I

a score=273.000000
s ce10.chrX               412086 1 + 17718866 A
s cb4.chrX              20967701 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5009054 1 - 33334924 A
i caeSp111.Scaffold629  I 30 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   257726 34 -  1162296 I

a score=133181.000000
s ce10.chrX               412087 546 + 17718866  
s cb4.chrX              20967702 480 - 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   257760 481 -  1162296  
i caeRem4.Crem_Contig24 I 34 I 240
s caeSp111.Scaffold629   5009055 480 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=273.000000
s ce10.chrX               412633 1 + 17718866 A
s cb4.chrX              20968183 1 - 21540570 A
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   5009535 1 - 33334924 a
i caeSp111.Scaffold629  C 0 I 82
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   258241 240 -  1162296 I

a score=468.000000
s ce10.chrX               412634 22 + 17718866 TCGGAATTTGAGCTTTTGCAGT
s cb4.chrX              20968184 22 - 21540570 TCTTAACTGAAATTGTTACAAT
i cb4.chrX              C 0 I 12
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5009536 82 - 33334924 I
e caeRem4.Crem_Contig24   258241 240 -  1162296 I

a score=0.000000
s ce10.chrX               412656 181 + 17718866 AAAAAAGAGGTACATTTTTATTTGACAAGAAACTTTGGTTTTTGAGATGCTGCTTCTGAATATGTTATTTACAAAGAATTCAGGGGTCTGATCGCACATTCCTGCTtcaaagacaaagttgcgccagtaggaaaattgctttaaaacatgcctatgacaccacaatgatcaaatagcatag
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206  12 - 21540570 I
e caeSp111.Scaffold629   5009536  82 - 33334924 I
e caeRem4.Crem_Contig24   258241 240 -  1162296 I

a score=902.000000
s ce10.chrX               412837 44 + 17718866 ttaaaaaTCCAATAAAAATGCTTATTAAAAAAGATATC--CCCTTG
s caeRem4.Crem_Contig24   258481 46 -  1162296 ATAGAACTCCTACATTAGTGTTGTTAAAGCAAGATATCAAACCTTG
i caeRem4.Crem_Contig24 I 240 I 13
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206 12 - 21540570 I
e caeSp111.Scaffold629   5009536 82 - 33334924 I

a score=0.000000
s ce10.chrX               412881 14 + 17718866 AATTCCATAGTTTA
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206 12 - 21540570 I
e caeSp111.Scaffold629   5009536 82 - 33334924 I
e caeRem4.Crem_Contig24   258527 13 -  1162296 I

a score=-670.000000
s ce10.chrX               412895 332 + 17718866 CATGATTCAAATGTTTAT------ATTCAAACCggcaaattgg---caaaccggcaaattgtggatttgccgaatttgccgggaaaacggc--gattgctgaagtttttcggcaaattgtggttttgcacattttcataatttcaatttcaatcggcaaaactgttattaaaaaggtacagtgctttc---------------------gttttataaaaaaaccagtctaatcatttccggcaaatgtgatccggc--aaacgg--caaatcaaaggcaagtt-------gcccaaaataaaaatttctggcaaatcggcaagcctgcaaacttccgaaaataaaattttcGAACC----TTCGGTAAATGCACTTTT
s caeRem4.Crem_Contig24   258540 334 -  1162296 caaaatcaaaattattatctgctcgtttaaaattaaaaacttgtttcgaaccaa-aatttaaaaatttg----att------gaaaatgtttggatt------cttttttagaaaaacacagtttttaaa----tGAAAGTTACGACTTCAACCAA-AAGATTATCATGCACCGGGATTGATGCATTTTTACTCGAAAGTTACTCAAaagttttgtcaaaaagtagg--cacccatttttg---aatccgagcCGGTCGGGGCGGGCCTGGTCGAGAGAAAGTTCAGTCCGGCCCGA---------TTC-------TTGGCAAGTCTGAAGATATCAGGTGAT--GTTATTCGAAACAGTTTTTGGAAGAGGCACTCTT
i caeRem4.Crem_Contig24 I 13 I 100
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206  12 - 21540570 I
e caeSp111.Scaffold629   5009536  82 - 33334924 I

a score=0.000000
s ce10.chrX               413227 215 + 17718866 TTCATAACCaataaaaaatttttaatatttttgtgtttaatatttttttaCTGTGATCTTAGATTATTTTCGCGCCATAGGTAGTGGTTTTTGACAAAAAATTTGGTGACAATAAAATTAGTTGAAAAGCTGCTAATGTTGGCGGATAAGTTGCGAATGGGTAAAGTTGGCGCTTAAATTGCTAAAGGTGGATAAGTTACGGCGAAATGCCGAGC
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206  12 - 21540570 I
e caeSp111.Scaffold629   5009536  82 - 33334924 I
e caeRem4.Crem_Contig24   258874 100 -  1162296 I

a score=372.000000
s ce10.chrX               413442 13 + 17718866 ACCTTCAAATCTC
s caeRem4.Crem_Contig24   258974 11 -  1162296 ACCTGCAAATC--
i caeRem4.Crem_Contig24 I 100 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968206 12 - 21540570 I
e caeSp111.Scaffold629   5009536 82 - 33334924 I

a score=62475.000000
s ce10.chrX               413455 240 + 17718866 ACCAGTATTTTTATTTGGTTCTTCTTTCCCAACGTCATCGTGGATGTTTGTAGTAAATCTAGTAGCGACTTGCACAGTCGATTGTGACCTAATAGATATACTGCATTGGCCATTAGCGCGAACACGAATTTTCCAGATACCACGGGAAAGATGATCTGAACAAAAGTTGCCTGCTA----TGA-----------AAAATCGGAAAAAACTCACTTATTTCAGGATCAGAAGGTGAATAGTCTGCGCTGTCTGAAA
s cb4.chrX              20968218 243 - 21540570 ACCAGCGAATCTATTCGGTTCCTCTTTCCCAACATCGTCGTGAATGTTAGTTGTGAATCTGGTAGATACTTGAACTGTTGACTGGGACCTCACAGAAATGCTGCACGATCCTTTGGCCTGAAcacgaattttccagattccacGTGCGAGGTGATCTGTAC-AAAACGGTTGATAGACACTGA-----------TGGCATGTTAGAAACTCACTGATTTCCGGATCGGAAGCAGTGTAATCCGCgctgtctgaaa
i cb4.chrX              I 12 I 31
s caeRem4.Crem_Contig24   258985 240 -  1162296 -----------TATTTGGCTCCTCCTTGCCAACATCGTCATGGATATTTGTGGTGAATCTAGTTGCCACTTGGACGGTCGACTGGGATCTCACGGATATGCTGCAAGCACCTTTGGCttgaattctcaatttccagattccacGGGCAAGATGATCTA----AAAGttataaattcaatttgaaatttgaaatctgaaatcaaagaGACTCACTAATTTCCGGATCCGATGCAATGTAGTCAGcgctatctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5009618 240 - 33334924 ACCAGCATTTCTATTGGGCTCCTCTCTTCCAACATCATCATGAATATTAGTGGTGAATCTGCTAGCCACTTGAACAGTCGACTGAGATCTCACAGAAATACTACACGCTCCTTGGGCTTTAACTCGAATTTTCCATATTCCGCGAGCGAGATgatctaaaa-aaagaaatatatta-----GAAACT-------TCAAACGTCAAAG--TTACTAATTTCCGGATCGGAAGCAGTGTAGTCGGCGCTGTCTGAAA
i caeSp111.Scaffold629  I 82 I 23
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=150.000000
s ce10.chrX               413695 4 + 17718866 AATT
s caeRem4.Crem_Contig24   259225 4 -  1162296 attt
i caeRem4.Crem_Contig24 C 0 I 36
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968461 31 - 21540570 I
e caeSp111.Scaffold629   5009858 23 - 33334924 I

a score=0.000000
s ce10.chrX               413699 715 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968461  31 - 21540570 I
e caeSp111.Scaffold629   5009858  23 - 33334924 I
e caeRem4.Crem_Contig24   259229  36 -  1162296 I

a score=282.000000
s ce10.chrX               414414 3 + 17718866 ATC
s caeSp111.Scaffold629   5009881 3 - 33334924 ATC
i caeSp111.Scaffold629  I 23 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20968461 31 - 21540570 I
e caeRem4.Crem_Contig24   259229 36 -  1162296 I

a score=273.000000
s ce10.chrX               414417 1 + 17718866 A
s cb4.chrX              20968492 1 - 21540570 a
i cb4.chrX              I 31 C 0
s caeSp111.Scaffold629   5009884 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   259229 36 -  1162296 I

a score=126201.000000
s ce10.chrX               414418 684 + 17718866  
s cb4.chrX              20968493 694 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   259265 584 -  1162296  
i caeRem4.Crem_Contig24 I 36 C 0
s caeSp111.Scaffold629   5009885 672 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-611.000000
s ce10.chrX               415102 4 + 17718866 ATAA----
s cb4.chrX              20969187 4 - 21540570 gtaa----
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   259849 8 -  1162296 gaaaataa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5010557 0 - 33334924 C

a score=-4866.000000
s ce10.chrX               415106 445 + 17718866  
s caeRem4.Crem_Contig24   259857 646 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20969191  38 - 21540570 I
e caeSp111.Scaffold629   5010557   0 - 33334924 C

a score=0.000000
s ce10.chrX               415551 36 + 17718866 GAATGCATCTGAAATAGAAACATGTTTGTACGATAA
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20969191 38 - 21540570 I
e caeSp111.Scaffold629   5010557  0 - 33334924 C
e caeRem4.Crem_Contig24   260503 30 -  1162296 I

a score=978.000000
s ce10.chrX               415587 43 + 17718866 CTTCAATTATTT----CAAAAATT-TTGGAAAATGGTTGGCTTCAAAT
s caeRem4.Crem_Contig24   260533 48 -  1162296 ttttacttactttcagcaaaaactgctgaaaaactgtacttttcaaat
i caeRem4.Crem_Contig24 I 30 I 128
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20969191 38 - 21540570 I
e caeSp111.Scaffold629   5010557  0 - 33334924 C

a score=0.000000
s ce10.chrX               415630 125 + 17718866 CTACATTAACTATAGTCCATTTTGCATTACAATGtagggctcccatgaggtcacccgaacgacgcctgcgccggcctcacgccgtgacccacgctgcatgtatccaaatctatagtgctgcgcTC
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20969191  38 - 21540570 I
e caeSp111.Scaffold629   5010557   0 - 33334924 C
e caeRem4.Crem_Contig24   260581 128 -  1162296 I

a score=-353.000000
s ce10.chrX               415755 53 + 17718866 ATCAAAATAATCCGGCATATAACTTATACTTTCCAACATCAAAATCCG--------GAACA
s caeRem4.Crem_Contig24   260709 57 -  1162296 atcaaaat--ttca--atttttctcccaCTTTCAGATAACGTAGTTAGCTTCCCATTGACT
i caeRem4.Crem_Contig24 I 128 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20969191 38 - 21540570 I
e caeSp111.Scaffold629   5010557  0 - 33334924 C

a score=765.000000
s ce10.chrX               415808 5 + 17718866 TACCA
s cb4.chrX              20969229 5 - 21540570 tacCC
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   260766 5 -  1162296 CACCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5010557 0 - 33334924 C

a score=299356.000000
s ce10.chrX               415813 1077 + 17718866  
s cb4.chrX              20969234 1121 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   260771 1223 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5010557 1200 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-699.000000
s ce10.chrX               416890 9 + 17718866 --TAATTATTA
s caeRem4.Crem_Contig24   261994 8 -  1162296 aaaaataa---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5011757 9 - 33334924 --GAATGTTTA
i caeSp111.Scaffold629  C 0 I 97
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20970355 0 - 21540570 C

a score=498.000000
s ce10.chrX               416899 14 + 17718866 AATATAAATTTCCT
s caeRem4.Crem_Contig24   262002 14 -  1162296 aatatcaggTTTTT
i caeRem4.Crem_Contig24 C 0 I 13
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20970355  0 - 21540570 C
e caeSp111.Scaffold629   5011766 97 - 33334924 I

a score=0.000000
s ce10.chrX               416913 445 + 17718866 CACTGATGGAGTTACATCTGTTAATAATTTTGAAATTATTACCCCCCCCCCCTTTATGTCCACATTAGGTTTAGAAAGAGTTCTTCTAACCTTATATATGCCAATCAACTTTACGtatatatatatatatatatacatgtatTTAATGCATTTAACGATGTTTACTTTGTTGTTGCTCGAATTCCGATTAAAAAAAATTGTCAAAAATAGACTAGAGATGTCGGATGCTATATCTACTTCAATTGTTCTGAAACATTGAAAAATGTTTAACTATGGAGACAGCATTCAAAGCTAAATTCTGTTGCCGACTTTTCTTGTCAAAATTTTTGGTTTTAGAGTTAAACTCATTTTAAAATATTGAAAAACAGTGAAATCACACTGTATATACACAAAATGTCTCAAACTACGCGTGCAAAATTATTTTGGAAATTTTAATTTTGTTTTC
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20970355   0 - 21540570 C
e caeSp111.Scaffold629   5011766  97 - 33334924 I
e caeRem4.Crem_Contig24   262016  13 -  1162296 I

a score=151.000000
s ce10.chrX               417358 57 + 17718866 AAAATTTCAAAATTTATATTTCTGCGTCATTTTCAAGCAATGAAAAAACTCCAAAGT
s cb4.chrX              20970355 43 - 21540570 aaaattgttaaattgataattttcagacatttttggattttta--------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5011766 97 - 33334924 I
e caeRem4.Crem_Contig24   262016 13 -  1162296 I

a score=43753.000000
s ce10.chrX               417415 164 + 17718866 TCTTACGTTAATATACAATGGAAGATATGGCTGAGGACAGGAAAACATTCCAAAATACATCTCATATTCACACTGATCTCTCCATGCACCCGATGACGCGTAGAGCACTTGTCGCTGACTTGTTTGAGGGTCTGTGAAATTG-TATTGCAATATATTTGTTTCTA
s cb4.chrX              20970398 154 - 21540570 tatTACATTAATGTACAACGAAAGATACGGCTGAGGGCATGCATACATTCCAAAATACATTTCGTACAGGCACTGATCTCTCCAAATTCCCGAAGAAGCATATAAAAGTTGACGCTGGCTAGTTTGAGGATCTG---------TATAGCA--TTATTGATGTcta
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   262029 158 -  1162296 TCTCACATTTATGTAAAGTGGCAGATAAGGTTGTGGGCAGGAGAACATTCCAAAATACATTTCGTATTGGCACTGATCTCTATATGTTCCAGAAGATGCGTAGAGGATTTGGCGTTGGCTGGTTTGAGGATCTGGAAA-----CATCCCA--TGATCAATTTCTG
i caeRem4.Crem_Contig24 I 13 I 19
s caeSp111.Scaffold629   5011863 163 - 33334924 TCTTACATTAATATATAGTGGAAGATATGGTTGTTTGCAGGAGAACATCCCAAAGTACATTTCATATTGACACTGATCACGGTAGGTTCCAGAGGAGGCGTAGAGCAGTTGACGTTGGCTGGTTTGAGgatctgaacattttttttccgg--aaattcattttta
i caeSp111.Scaffold629  I 97 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-3455.000000
s ce10.chrX               417579 33 + 17718866 CATTTTGGAAAAAAAGTATGCATATTTACAATC-----
s cb4.chrX              20970561  8 - 21540570 ------------------------------gtttttta
i cb4.chrX              I 9 C 0
s caeSp111.Scaffold629   5012026  8 - 33334924 -----------------------------aatcaatC-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   262187 19 -  1162296 I

a score=35247.000000
s ce10.chrX               417612 97 + 17718866 -TTACCATTGAACCAAACAACAGCTTCAAGAGTTGTGTCGAGCGGATCGTCAAGGTAGAGAGAATCCATTCTTGCTACCAAATGAGATGTGGTTTCTG
s cb4.chrX              20970569 97 - 21540570 -ttACCATTATACCACACAACTGCTTCAAAAGTAGCGTCTAGCGGGTCATCCAGATATAGAGAATCCATTCTGGCTACTAAGTGAGACGTAGTTTCTG
i cb4.chrX              C 0 I 2370
s caeRem4.Crem_Contig24   262206 97 -  1162296 -TTACCGTTATACCAGACAATTGCTTCGATAGTTGTATCCAATGGGTCATCAAGATAAAGACCGTCCATTCTTGCTACCAAATGAGAAGTGGTTTCTA
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold629   5012034 98 - 33334924 CTCACCATTATACCAGATAACTGCTTCCAGAGTGACATCTAATGGATCATCGAGATACAGTGAGTCCATTCTTGCTACCAAATGAGATGCTGTTTCTG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-3542.000000
s ce10.chrX               417709 33 + 17718866 TATTAACTATGTTATCTTTCAAATGTTCGGTTT----------
s caeRem4.Crem_Contig24   262303 39 -  1162296 AAAAACATACTTCATCTATTTCAATAACCG----GGAAACTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5012132 35 - 33334924 -----CAAATTTT-TGTGTTATAAATATGGTTTTGCAAACT--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20970666 2370 - 21540570 I

a score=37278.000000
s ce10.chrX               417742 222 + 17718866 AAACCTACGATAGACGGGGGCATGATAGGTGTCGTCCGTGCCAATGTTATCGGTGACAGATGTATAGAGCCGGTAGGTGGATCTTCCCATTAAACGATATTGGCAAAATGAGTTGTGAGAACTGTTTGTGTTGATGTTTAACTGAAATAAAGCGAGTTTAATCAGGTATCCCTAAAAAATT-ATTTATCAGATGCTATTGTTTGTCTCTGAAGCGAACAATTT
s cb4.chrX              20973036 163 - 21540570 AACCTTACTGTAGACAGGTGCGTGGTATGTGTCATCGGTATAAATGTTGTCAGTGACTGAGGTGTACAATCTGTATGTAGATCTTCCCATGAGTCGGTATTGACAAATTGAGTTGTGAGTTGTGTTAGTGTTTATGTTCAACTTAATT------------------------TCAGAGATT---------------ATGATT---------------------
i cb4.chrX              I 2370 C 0
s caeRem4.Crem_Contig24   262342 178 -  1162296 AAACATACGAAAAACTGGAGCGTGATAGGTGTCATCAGTTCCAATATTATCAGTAATTGAGGTGTATAGTCTATAGGTGGATCTTCCCATCAAACGATATTGGCAGATGGAGTTGTGAGTACTGTTTGTGTTGAtattgagctgaaat------------------------ttagTAATTCACTTTTGAAATGAGATACTT---------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5012167 154 - 33334924 AGACTAACGGTAGACTGGAGCATGATAAGTGTCATCTGTTCCAATTGCATCTGACACTGAAGCATACAATCTGTAAGTTGATCTTCCCATTAACCGATACTGGCAGACGGAGTTGTGAGTAGAGTTTGTGTTGATgtttaactgaaa---------------------------ataaatt------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-2751.000000
s ce10.chrX               417964 61 + 17718866 AGTTAGGTGATTCCCAATAATGCAGGCTAATACCAAATCTTAACATTGTTTGGGAT-ATTGT
s cb4.chrX              20973199  7 - 21540570 ------------------------------------------------------AT-GTTGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5012321 12 - 33334924 --------------------------------------------------ttgaatggtTGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   262520  0 -  1162296 C

a score=618.000000
s ce10.chrX               418025 15 + 17718866 CGAAATCGGAATCCC
s caeSp111.Scaffold629   5012333 13 - 33334924 --AAATCTGATTCTC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20973206  0 - 21540570 C
e caeRem4.Crem_Contig24   262520  0 -  1162296 C

a score=0.000000
s ce10.chrX               418040 96 + 17718866 GACATCTCATAGGTCCCGCGTCCAAACAGTGCGGAGCGATGAAAACAAAGTAGAACGCGGCCGTGTGTAACGGCATTGTAACTCTGTGAGCCTCAC
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20973206  0 - 21540570 C
e caeSp111.Scaffold629   5012346  0 - 33334924 C
e caeRem4.Crem_Contig24   262520  0 -  1162296 C

a score=260.000000
s ce10.chrX               418136 16 + 17718866 TGAATAAAAAAATGTG
s cb4.chrX              20973206 15 - 21540570 TGGACCAAAAGACGT-
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5012346  0 - 33334924 C
e caeRem4.Crem_Contig24   262520  0 -  1162296 C

a score=191.000000
s ce10.chrX               418152 2 + 17718866 CA
s caeRem4.Crem_Contig24   262520 2 -  1162296 CA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20973221 0 - 21540570 C
e caeSp111.Scaffold629   5012346 0 - 33334924 C

a score=149011.000000
s ce10.chrX               418154 679 + 17718866  
s cb4.chrX              20973221 544 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   262522 564 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 310
s caeSp111.Scaffold629   5012346 583 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-16803.000000
s ce10.chrX               418833 313 + 17718866 TCGATCGACAGACATCATAATGTcatgtggtgtcaggctgtcctatttcggtttgatctacctagatttactagaaatgctcaattaatttcgcatggttaagaacgtgctgacgtcacatttttttgcggacaaaattcccgctttttttctagatcaCGTGTAATGCCACGTTTTAGTAGATATTAAAAAAAAATTTGAACCACCATTTGAATTTTTTTTTACCAGATGTCTTGTTTCGAAATTTTGCTAATCTTTCAACTTTCTTAAAGTCTAGTTTACTAACATTTGAGAACGCTTTGATTATGTCAAC
s cb4.chrX              20973765  83 - 21540570 ------------------AATAACATGCG---------------------------------TAAATTTGATAA-----------------------------------------------------------AGAA---TCGCAACGTTCGGA-------TGTAATCTCGC---T-----GGTTTTAGA------------------TGTGGATTAT------------------------------------------------TCCGGGAATAG------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5012929  98 - 33334924 ----------------------TTCTTTA---------------------------------aatattcaataa-----------------------------------------------------------ataatTCTCGTTGATTTCCTA-------AATAATcagac---tcaaaaaattacagaagcaatt-----------tttgaattat------------------------------------------------caaaaacttaa--------------aaaa------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeRem4.Crem_Contig24   263086 310 -  1162296 I

a score=41813.000000
s ce10.chrX               419146 170 + 17718866 AACTCACTGGATATTTTTTGAATGCCGAGTTCTCCAATGTTTTCGATATTCCGGCTAATAATGCATCGTCACATTCTGTCTCAGTTGGGGGTGCAACTAAACTTCGAATCGAATTTGCGAAATCTTCTCCAATGTCATATTCGTGAGAGAAAGTGATTGCTGA-AA-------AATG-G
s cb4.chrX              20973848 170 - 21540570 GACTCACTGGATATTTCTTAAAAGCGTTGTTGtctaaagttttcgaaattcccgaaaTCAAAGCATCATCACATTCTGTTTCAGTTGGAGGAGTTGCCAAACTTCGGATTGATGCGACAAAGTCCTCTCCAATATCATAGTCGTGAGAAAATGTAACACCTCA-AA-------AGTAG-
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24   263396 176 -  1162296 AACTAACCGggtattttttgaatgcatTGTTATCAATTGTAGCAGAAACACCAGCCAACAAGGCATCATCACACTCTGTTTCAGTTGCAGGTGCTGTCAAGTTACGAATGGATGCCACAAAGTCCTTTCCAGAGTCGTAATCGTGAGAAAATGTCACACCTAA-AACaaactcatta--
i caeRem4.Crem_Contig24 I 310 C 0
s caeSp111.Scaffold629   5013027 170 - 33334924 agtttaccGGATAATCTTTGAAAGCATTGTTATCCAACATTTGCGAAAGACCAGCCAACAACGCGTCATCACATTCAGTCTCTGTTGGAGGAGCAACTAAACTGCGGATAGAGGCCACGAATTCCTCTCCAGTATCATAGTCATGAGAGAACACGATTCCTgatga-------atta--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=-751.000000
s ce10.chrX               419316 20 + 17718866 AAAAAA----AAGGTGTTTTTTGT
s caeRem4.Crem_Contig24   263572 23 -  1162296 -aaaaatgtcaaGTTGGTCTCTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5013197 11 - 33334924 ----------aaatt--tttttg-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974018 30 - 21540570 I

a score=361.000000
s ce10.chrX               419336 9 + 17718866 TGAATTTAA
s caeSp111.Scaffold629   5013208 9 - 33334924 aaaatttga
i caeSp111.Scaffold629  C 0 I 3
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974018 30 - 21540570 I
e caeRem4.Crem_Contig24   263595 0 -  1162296 C

a score=0.000000
s ce10.chrX               419345 379 + 17718866 TTTTGTGAAAATTGGCAAAAATAGGTTTTTGAGCAAAATTACAACGTTCGTTCAGATATTTTATCACAAAATTAATGGAAAAAATTCACTTTTTAACCGTTTTTTAAGTTAAAATAGGTGAAAACGCCTGTCAGTTTTGTTGTGACAATGACACAAAAACTGCCTCGAAGTCACATTGTGTCAATCGGCACACTTACTTGGCACATTTTGATTTTTATGTAAGTTTTCGAGTAACTTTTAAGAAATTTCAATTACAATTGAAATTTTCTTCGAAAAGTACAAATATTTCTCTACGTTTTTATATAAATGAAAAAAGGGGTTTTTGTCGATCTGCCACAAAACAAAATCACAAAATTAAAAAAAAAACTGCTACAACACT
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974018  30 - 21540570 I
e caeSp111.Scaffold629   5013217   3 - 33334924 I
e caeRem4.Crem_Contig24   263595   0 -  1162296 C

a score=291.000000
s ce10.chrX               419724 3 + 17718866 ACG
s caeSp111.Scaffold629   5013220 3 - 33334924 ACG
i caeSp111.Scaffold629  I 3 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974018 30 - 21540570 I
e caeRem4.Crem_Contig24   263595 0 -  1162296 C

a score=104493.000000
s ce10.chrX               419727 338 + 17718866 TACCATTATTCGAGACAACTGTGAGTATAAATTTTTGGAAAAATATTGGATAGTGAAGCTCATAATATTCAACAATGTTTGTGGCTGCTTCTGCAATCTCATTCAACTGAGCTTTCATTGAACTTGAAGATCTGATCACAAAAGCGATTGCACTCTGAGCTTCATCAAAATTGTCGTCCGATTGTTGCAGACAAGAAATATGCTCACAATGAGCACCACTGTACCCAACATCACAAATGCAGCCTGCGTTGTCTGGAGTCGTGGTTCCGCCATTGAGACAAAGAGGAATCTCGCAGTTACCGCCGGTGAAAAATTCGCCACAATAACATCCCTGAAAA
s cb4.chrX              20974048 338 - 21540570 TACCATTGTTTGAAACCACAGTCAaaacaaatttctggaaaaaaattggatagtGTTGTTCATAGAAGTTGACAATTTTATCAGCAGTTGCAGAAATTTCATTCAACTGAGATTTCATGGAAGTTGATGCTCTTATCACAAAGCCAATGGCACTCTGCGCTTCTTCGAATTGGTCATCAGCGAGTTGAAGACACGAGATGTGCTGACAATGATCTCCACTGTATCCAATATCACAAATGCAACCTTCATTGTTTCCGGTTGTGGTTCCGCCATTCAAACATAACGGTATTTCGCAGTTGActcccgaaaaaaattctccaCAGTAGCATCCCTGTAAa
i cb4.chrX              I 30 I 415
s caeRem4.Crem_Contig24   263595 332 -  1162296 TACCATTATTCGAAACAACAGTCAACACAAActtctggaagaaaattggGTAATGAACTTCATAATATTTCACAATTCGGTCAGCGGCCTCAGCGATCTCATTGAGTTGTGCTTTCATAGAGCTGGAAGCACGAACAACAAAAGCGAGGGCACTTTGAGCCTCCTCAAAGTTGTCATCCGAGAGTTGTAGGCAAGAGATGTGTTGACAGTGGTCTCCACTGTATCCAATATCACAAATGCATCCTCCAT------CGGTACTGGTTCCACCATTCAGGCAAAGTGGGATCTCACAATTGACACCAGCAAAGAATTCTCCGCAGTAGCAGccctgaaat
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   5013223 338 - 33334924 TACCATTATTGGAAACTACTGTCAGAAcgaatttttggaagaagatggGGTAATGAAGTTCGTAATATTTGATTATTCTATCAGCAGCCTCTGCGATCTCGTTCAATTGGGCTTTCATGGAGTTTGAAGAGCGGACTACAAATCCAATGGCACTTTGAGCCTCCTCGAAGTTATCATCAGAGAGTTGAAGGCAGGATACATGTTGGCAGTGCTCTCCACTGTATCCTACGTCACAGATGCATCCAGCATTGTTGCTAGTTGTGGTTCCTCCATTGAGACATAGTGGGATCTCACAGTTGGATCCGGAAAAGAATTCTCCACAGTAGCAACCCTGAATA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I

a score=273.000000
s ce10.chrX               420065 1 + 17718866 A
s caeRem4.Crem_Contig24   263930 1 -  1162296 a
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   5013561 1 - 33334924 A
i caeSp111.Scaffold629  C 0 I 311
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974386 415 - 21540570 I

a score=410.000000
s ce10.chrX               420066 8 + 17718866 ATGTAGTG
s caeRem4.Crem_Contig24   263931 8 -  1162296 ttgtaaTG
i caeRem4.Crem_Contig24 C 0 I 1622
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974386 415 - 21540570 I
e caeSp111.Scaffold629   5013562 311 - 33334924 I

a score=0.000000
s ce10.chrX               420074 1432 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974386  415 - 21540570 I
e caeSp111.Scaffold629   5013562  311 - 33334924 I
e caeRem4.Crem_Contig24   263939 1622 -  1162296 I

a score=594.000000
s ce10.chrX               421506 129 + 17718866 AAAAAAAACAGATAGAA-----------------------GAAATTTCTCCTTAAATTTCATTGTCCATCTCTCTTGGAAACACATTATCTATCAAATGAAAAACGCATTTTTTTTCCTGGCAGAAAAATGAAATTGGTT-----------AG----ATTACACTGG
s caeRem4.Crem_Contig24   265561 147 -  1162296 agaaaaaacagaTAGAAAGTATCATCAGAATGTACTGACCGAAACTTCCTTTTA---CCTGTTGTCC-----TCCTAGAAACATACGCTATCTCTAATAA-----------TTTTaccagaaaaaagagaaagaaaggtTCTGCGCAAAAAAGTATCATTACagtg-
i caeRem4.Crem_Contig24 I 1622 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e cb4.chrX              20974386 415 - 21540570 I
e caeSp111.Scaffold629   5013562 311 - 33334924 I

a score=-139.000000
s ce10.chrX               421635 16 + 17718866 ------TT----AGGTTT-GAAGGTGT
s cb4.chrX              20974801 17 - 21540570 ------tt----gggttcagtaggcgt
i cb4.chrX              I 415 C 0
s caeRem4.Crem_Contig24   265708 27 -  1162296 taatttttcaaagcgTTTCCTGGGTGt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       26366 15135 +   258924 I
e caeSp111.Scaffold629   5013562 311 - 33334924 I

a score=1692.000000
s ce10.chrX               421651 3 + 17718866 AAC
s cb4.chrX              20974818 3 - 21540570 aac
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   265735 3 -  1162296 aac
i caeRem4.Crem_Contig24 C 0 I 20
s caeJap4.Scaffold54       41501 3 +   258924 AAC
i caeJap4.Scaffold54    I 15135 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeSp111.Scaffold629   5013562 311 - 33334924 I

a score=615089.000000
s ce10.chrX               421654 1042 + 17718866  
s cb4.chrX              20974828 1030 - 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   265758 1043 -  1162296  
i caeRem4.Crem_Contig24 I 20 C 0
s caeSp111.Scaffold629   5013873 1012 - 33334924  
i caeSp111.Scaffold629  I 311 C 0
s caeJap4.Scaffold54       41504 1045 +   258924  
i caeJap4.Scaffold54    C 0 I 1626
e caePb3.Scfld02_254       75210 3891 +   193288 I

a score=-115.000000
s ce10.chrX               422696 28 + 17718866 GTTCTGTTTCTGCACTTTTTTTTAAATT
s cb4.chrX              20975858  7 - 21540570 ---------------------TTAAACT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e caeSp111.Scaffold629   5014885  0 - 33334924 C
e caeRem4.Crem_Contig24   266801  0 -  1162296 C

a score=-13509.000000
s ce10.chrX               422724 223 + 17718866 GCAATTTCACATGCAAATCAAAATACTTCAGCTTTTCAAATCTGGCAAATTTCTTTTTTTTTTTAATTTGGAACACTTTTTAAAAACCAACTCTAAAAACCAACTACTAGAATTATTTACCAAAATAGAAAATTATACCAAGATTGTCCTTCGAAATATAGTCCAGTTAAAAAAATTTTTTTGCCGGGCAGCCCCAGTCCACCTGAAAATAAAGCCACCTACG
s caeRem4.Crem_Contig24   266801  31 -  1162296 --------------------------------TACTCATG------GAATTTCCC---------------------------------------------------------------------ACAGACAA-------AAAACT------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5014885  68 - 33334924 --------------gaaacaaaaca---tggtctttcaat------aaatttttc-------------------------------------------------------------------gagcATTCAATT----TAAGATtgc----------------------------tattttttctcgaca---------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20975865   0 - 21540570 C

a score=56232.000000
s ce10.chrX               422947 157 + 17718866 TACCGTTTCATTATACAGAATTCCTCCATTTTCACAAAACCTTGCTGGCGTCGTCGAAACGTGCACGGAAGGTGTTGTGAATGTAATTTCACTTAGGTCACAGCTAAAGTCGTAGATTCTCTGGAACCTGTTTCCATCACTATCGTATCCTAGAAAC
s cb4.chrX              20975865 157 - 21540570 TACAGTGTAATTGTAGAGTATTCCTCCGTTTTCACAAAACCTAGCAGGTGTTGTGGAGACGTCTCCTGAAGGCGTAGTAGACACAACGTCGCTCATATCACAATTAAAATCATAAATTCTCTGAAACCGGTTACCATCGCTATCGTAGCCTGCAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   266832 157 -  1162296 TACTGTATCATTATACAAAATTCCTCCATTTTCACAAAACCTAGCAGGTGTTGTTGAGATGTCCACTGATGGCGTTGTGAACACAACGTCTCCAATGTCACAATTGAAATCGTAGATTCTCTGGAACCGGTTTCCATCGCTGTCGTAGCCTTAATAC
i caeRem4.Crem_Contig24 C 0 I 34
s caeSp111.Scaffold629   5014953 157 - 33334924 TACCGTATCATTATACAAAATTCCTCCATTCTCACAAAACTTGGCTACTGTCGTTGAGACATCAAAAGACGGCGTGGTGAACACAACGTCTCCAATGTCGCAATTGAAATCGTAGATTCTCTGGAACCGGTTTCCATCGCTATCGTATCCTAAAAAC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=-1254.000000
s ce10.chrX               423104 4 + 17718866 CGAC--
s cb4.chrX              20976022 4 - 21540570 --TAGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5015110 4 - 33334924 CATC--
i caeSp111.Scaffold629  C 0 I 23
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e caeRem4.Crem_Contig24   266989 34 -  1162296 I

a score=-919.000000
s ce10.chrX               423108 10 + 17718866 AATG--------------------AGAGAA
s cb4.chrX              20976026 30 - 21540570 AAAGATTACATCACTTTTCTTTCTATATAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e caeSp111.Scaffold629   5015114 23 - 33334924 I
e caeRem4.Crem_Contig24   266989 34 -  1162296 I

a score=-462.000000
s ce10.chrX               423118 5 + 17718866 GGGA--G
s cb4.chrX              20976056 7 - 21540570 GGAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   267023 1 -  1162296 ------G
i caeRem4.Crem_Contig24 I 34 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e caeSp111.Scaffold629   5015114 23 - 33334924 I

a score=36471.000000
s ce10.chrX               423123 114 + 17718866 -AAAATAGAAAGGAGAA-ATACCTCTGAACTTGGCATGATACAAGTTTTGAGACGTACAGTTATAAGATTGTTGAGTGATATGAGGGGTACTGCAGCCGTATCTGAAA-AATGGTTT
s cb4.chrX              20976063 116 - 21540570 AAAAGCCAAACAAAAACTAAACCTCTGAACTTTGCATGATACAAGTTTTGAGACGTGCAGTTGTACGACTGTTGCGTTATATGAGGAGTGTTGCATCCGTAtctttaa-aacatttt
i cb4.chrX              C 0 I 7944
s caeRem4.Crem_Contig24   267024 116 -  1162296 Caaggaaaaacgaaaac-aaacCTCTGAACTTCGCGTGATACAAGTTTTGGGAAGTACAATTATAAGATTGTTGGGTGATGTGAGGAGTGTTGCAGCCGTATCTGTAATAATGACCT
i caeRem4.Crem_Contig24 C 0 I 1069
s caeSp111.Scaffold629   5015137 105 - 33334924 -AAAGACGAATGACAAC-ACACCTCTGAACTTCGCGTGATACAAGTTTTGCGACGTACAATTGTAGGATTGTTGGGTGATGTGGGGAGTGTTGCAGCCGTATCTAAA----------
i caeSp111.Scaffold629  I 23 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=0.000000
s ce10.chrX               423237 1 + 17718866 T
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20976179 7944 - 21540570 I
e caeSp111.Scaffold629   5015242 0 - 33334924 C
e caeRem4.Crem_Contig24   267140 1069 -  1162296 I

a score=-1336.000000
s ce10.chrX               423238 109 + 17718866 TCTGCCAAAGCAATTATGTTCATGATTCATCTTTGTTAAATCTAAATGTTCAGGCTTTATTTTTGAATTAAAAAATGCTTCTGCAATATAAACATGTATTTTTTTCAAC
s caeSp111.Scaffold629   5015242  32 - 33334924 ---------------------------------TTTTAAatcggaag--------tttttttttgaattacaa------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20976179 7944 - 21540570 I
e caeRem4.Crem_Contig24   267140 1069 -  1162296 I

a score=0.000000
s ce10.chrX               423347 27 + 17718866 AGAAAAAAGTTTACTTTCCTTCAATTT
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20976179 7944 - 21540570 I
e caeSp111.Scaffold629   5015274  0 - 33334924 C
e caeRem4.Crem_Contig24   267140 1069 -  1162296 I

a score=64557.000000
s ce10.chrX               423374 414 + 17718866  
s cb4.chrX              20984123 396 - 21540570  
i cb4.chrX              I 7944 I 1821
s caeRem4.Crem_Contig24   268209 385 -  1162296  
i caeRem4.Crem_Contig24 I 1069 C 0
s caeSp111.Scaffold629   5015274 522 - 33334924  
i caeSp111.Scaffold629  C 0 I 15
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=-5114.000000
s ce10.chrX               423788 33 + 17718866 TCACAATTTGGGTCATCTTGTTT----------------TAATTGTGTG---------------------------------
s caeRem4.Crem_Contig24   268594 17 -  1162296 ---------------------------------------TAACTGTTTC--------------------TTCTGCT------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5015811 82 - 33334924 TCAgactttttggaattctcCTCTAATTAGTCACTAAAATAACTCCTCCACCCATCCAATATCATTACATCCTGTCACTACT
i caeSp111.Scaffold629  I 15 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20984519 1821 - 21540570 I

a score=90390.000000
s ce10.chrX               423821 242 + 17718866 CTCACTTGTTCAAATCTGCAGAGAGCTGAACCGTATACGCTCCAGTTCCGTGAACATTCTTTCCGTTGCAGATAAGGTGAATTGTTTGAGTGACGTCCGTGGTGATATCTTTGCATGTGGACACTTCGCCTCCAATCGGATTATAAACTGTTGCCCGCGGATTGAGGGCGTCGAGTGTATTGATAATTACAAAGAACTCTTCGATAAAATTGTCGACGTAAAAAGTGAAAGTGTCGGAGCAA
s cb4.chrX              20986340 242 - 21540570 CTCACTTATTCAAATCAGCTGTCAGTTGGACTGTATACGTCCCTGTTCCATGAAGGCTTTTTCCGTTGCAGATAAGATGAATGGTTTGCGTTGCGGACGTTGAATAATCCTGACATGAAGAAACTTCTCCTCCAATCGGATTATAAACTGTTGCTCGCGGATTGAGTGCGTCAAGTGTGTTGAtaatgacaaaaaattcgtTGATGAAATTGTCGACGTAGAAAGTAAAGGTGTCAGCACAA
i cb4.chrX              I 1821 I 51
s caeRem4.Crem_Contig24   268611 242 -  1162296 CTTACTTGTTCATATCAGCTGCAAGCTTGACTGTGTAAGCTCCAGTTCCATGAATGTTTTTTCCATTGCAAATAAGATGAATGGATTGAGTCGCTGACGATGCATAATCTTTGCAGGAAGAAACTTCCCCTCCAATCGGATTATAAACTGTTGCTCGGGGGTTGAGGGCGTCGAGTGTAGTGATAATGACAAAAAACTCATCGATAAAGTTGTCGACGTAGAATGTGAAGGTATCGGAACat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5015893 242 - 33334924 CTCACTTGTTCATATCAGCTGCCAGTTTGACGGTATACGCCCCGGTTCCATGAAGATTCTTTCCATTGCAGATAAGATGAACAGTTTGAGTTGCCGATGTGGAATAGTCTTTGCAAGAGGCAACCTCGCCTCCAATCGGATTATAGATGGTCGCTCGAGGATTGAGGGCGTCGAGTGTGTTGACAATCACGAAGAACTCGTTGATAAAGTTGTCCACGTAGAATGTGAAGGTGTCAGAGCAT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=1914.000000
s ce10.chrX               424063 11 + 17718866 GTCGCACTGAA
s caeRem4.Crem_Contig24   268853 11 -  1162296 gttgagctgaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5016135 11 - 33334924 GTGGAACTGAA
i caeSp111.Scaffold629  C 0 I 122
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986582 51 - 21540570 I

a score=151.000000
s ce10.chrX               424074 3 + 17718866 GAT
s caeRem4.Crem_Contig24   268864 3 -  1162296 aat
i caeRem4.Crem_Contig24 C 0 I 216
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986582 51 - 21540570 I
e caeSp111.Scaffold629   5016146 122 - 33334924 I

a score=0.000000
s ce10.chrX               424077 920 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986582  51 - 21540570 I
e caeSp111.Scaffold629   5016146 122 - 33334924 I
e caeRem4.Crem_Contig24   268867 216 -  1162296 I

a score=273.000000
s ce10.chrX               424997 1 + 17718866 T
s caeRem4.Crem_Contig24   269083 1 -  1162296 T
i caeRem4.Crem_Contig24 I 216 C 0
s caeSp111.Scaffold629   5016268 1 - 33334924 T
i caeSp111.Scaffold629  I 122 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986582 51 - 21540570 I

a score=35412.000000
s ce10.chrX               424998 198 + 17718866 ACCTGAAATCACTCTCCACTAAATCACCAAATTTTGCAGTACCGTCATGAGGCAGTATATCAATTGACTTATTGTAGCA-----------TGTCACTGG-----AGAGGTTTGATCCAACAGTTTC---GGTCTTGA----AGAGAAGGTAGGTTGAACCCGTTGAGAAGGTTCCGATAGATTTAGTGCAACAAGTTGTTTGAGTTTCGAATTCACTGAAA
s cb4.chrX              20986633 195 - 21540570 ACCTGAAGTCGCTTTCGATCAAATCTCCAAATTGTGCTGTACCATCGTGTGGCAAAATATCAATTGATCTATTGTAGCA-----------CGTAGTTTG-----ACTATC---ATCCAGAAT-------GACTTTGTGATGAGAAGGCTCAGGAAAAACTCGCTTTGACAATTCAGGTAAATTGAACGAAGAGAAAATCTCAAGTTTTTGATTCACTGAAA
i cb4.chrX              I 51 I 737
s caeRem4.Crem_Contig24   269084 198 -  1162296 ACCTGAAATCACTTTCAACCAGGTCTCCATATTGTGCAGTTCCATCGTGTGGCAAAATATCAATTGATCTGTTGTAGCAAGATATAGGGGCGTTGGTTGCGGCAACTGCC-------------------GATTTTGC----AGCAAATTCTGGTTGGAATCGTTGTGAAACTTCTGGTAAACCAAATGAATTGTATTGTAGGAGTTTTGAGCTCACTGAAA
i caeRem4.Crem_Contig24 C 0 I 777
s caeSp111.Scaffold629   5016269 198 - 33334924 ACCTGAAATCACTTTCAATCAAATCTCCAAACTTAGCAGTTCCATCATGCGGAAGGATCGCAACCGATTTATTGTAGCA-----------TGTGATAGG-----ATTCGt---gtcaaaaatgtttctagCTTTTTC----CGGAAATTCTGGTTGATATCGTTCGGAAACTTCTGGGAGGGCAAATGAAGAGTATTTTTGGAGTTTCAAGTTCACTAAAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=91.000000
s ce10.chrX               425196 1 + 17718866 T
s caeSp111.Scaffold629   5016467 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 883
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986828 737 - 21540570 I
e caeRem4.Crem_Contig24   269282 777 -  1162296 I

a score=0.000000
s ce10.chrX               425197 1751 + 17718866  
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986828  737 - 21540570 I
e caeSp111.Scaffold629   5016468  883 - 33334924 I
e caeRem4.Crem_Contig24   269282  777 -  1162296 I

a score=790.000000
s ce10.chrX               426948 75 + 17718866 AGTCTGAAAAT----TTTCTCCTACAATCATGTCTGTTTTTATTTTTGTGTGCCAATTTTTTAAATAAAAAATTGACCA
s caeRem4.Crem_Contig24   270059 71 -  1162296 aatttgaaaatggtttttattctgagattacattcattttt--ccttgAGTTTCACTCCC------AAAAGGTTGAAtg
i caeRem4.Crem_Contig24 I 777 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986828 737 - 21540570 I
e caeSp111.Scaffold629   5016468 883 - 33334924 I

a score=-471.000000
s ce10.chrX               427023 21 + 17718866 TTTTTTGTAAAATTT------TTTTTC-
s caeRem4.Crem_Contig24   270130 25 -  1162296 ---ctttgaagttttgaaatgtttgaac
i caeRem4.Crem_Contig24 C 0 I 13
s caeSp111.Scaffold629   5017351 27 - 33334924 ttttctgaaaaattaaaaacgtttttc-
i caeSp111.Scaffold629  I 883 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I
e cb4.chrX              20986828 737 - 21540570 I

a score=2977.000000
s ce10.chrX               427044 161 + 17718866 TGAAAAAAAAAACTTTATTTC-TCAAAACATTC----AAATAAAAAGAAATAAACGTGGTTGTATGTCAAAATTCTGAATAAAAGTTTTTGGCATATAAAGGGCTGAAGCACAACTGAAAAGCAGAGAAAAGTTTAAATTTGACAAAAA-AAATTGAGAAAACGGTG
s cb4.chrX              20987565 133 - 21540570 t----gaaaaaaatttatttc-tcaGAACTTAAgggaaaatggagagaaaTA----------------AAAAGATGGAAtagtaatttttggaaaatataagGCGG-GGCGGTTCTGAGATTATta-gaaaatcgaca----aaaaata-aactgaa--aaa----a
i cb4.chrX              I 737 C 0
s caeRem4.Crem_Contig24   270168 139 -  1162296 ttgaaaaaaaaactttatttcttcGAAATTCTATAGGGAATAAAGAGAAATAAAC------------TAAAAGTTGG-------GTTTTTGGTATATCAAGAGCGG-AAAAAAGCTGAGACAAGCAGGAAAAGCGACAG---AAAAGTG-AATTAGAGGGAC----A
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold629   5017378 122 - 33334924 -----aaaaaaaatgtatttc-tcaagaaatcaaaaagaaaaaagagaaata-------------------agcTGG--------TATTTGGTATGTTGAAAGCAA--------TTGAAGCTGGGGGGTAAAACTGTATAGCAGAAGTGAAATTCCAATGAA----A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       42549 1626 +   258924 I

a score=24477.000000
s ce10.chrX               427205 272 + 17718866 GGCAAGATTGATATTGGAA-------GTGGTAGACATAAA------------------------------ATTAAGA----TGAAT---AATATTGGAA----AGTA--GTGTGACGGTAAGAAGGGAAACATTGAAAAA-CCATTAAAACTATGTGATCTGTGGAACATTGAAAGAGACAAAGAAAGCGATGGGAAATTGTTG--ATTGAAAG-------AAAGAAGGAAATTAAAGCCGGCTTAATTTCCCATCAAGGTTAA----ACAAGACAAGAAGCGACTAGAAGTTTTGCAGAACG-----------AAAGAT--GCGTCGAGATATACAG----------CTAGCGATTAG---------------------
s cb4.chrX              20987698 256 - 21540570 ggcaAGATAGCTAAAGGAGTAAAGT-ATTG-----ATTGA------------------------------TTTAGGAATATTGCAT---GAGCACAAAAGAATAACATTGTTTTAGAGTCTAGAAGAAA------------CAATTGAAAGAGTGCA----------------GAGGG---AAG-------CGAAAAAGTGTTGGGGATGAAAG-------ATTAAAGGAAATTAAAGCTGGTCTAATTTCTCATCAAATTTGG----ACGAGACAAGAAGCGACTAGAGATAACTGAAAGAGTTTGGTATG--TAATAT--ACATT-TGATTCACAG----------CTAGCGATAAG---------------------
i cb4.chrX              C 0 I 563
s caeRem4.Crem_Contig24   270307 313 -  1162296 GGCAAGAATGCTGATGGAATAAAggaattg-----tttgaaatataAGGGTACCATACATATAATTATTTCTGAGGATAGTTGCAT---GGA---AAATCATTAAAACTATGTAATAG--TAGGAGAGAACGATGATTAATCAGTAGAAAGTCTGCATGGGGTG------TGGAAGGG---AAGAAAGCGATGAACAATTGTAGTGAAAGAAAA-------GGGGGAGGAAATTAAAGCCGGCTTAATTTCCCATCAAGGTTAA----ACAAGACAAGAAGCGACTAGAAGTAGAGGAAAGAATTGGTTTTGATTAGTAT--ACATC-AGATATACAG----------CTAGCGGTTTG---------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5017500 287 - 33334924 GGCAAGATTGCTAATGGAATAAAGG-GTGGGGGGCGTTGA--------------------------ATTTCTTGGTA----TGAAT---GATTTTGGAAGAGGAACA--ATTCGATGGTGTGAAAGAAA-CAATCATTA--AAACTAATAGTTTgggaagaatt---------gaaag---aggaaagtggaggaaagcgattggaagtgaaag------aaagagaggaaattaaagCCGGCTTAATTTCCCATCAAGGTTAAACACACAAGACAAGAAGCGACTAGAAG-AATGAAGACGATT---TTTGATTAGTATACACATC-AGATATACAG----------CTAGCGATTTG---------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54       44175 296 +   258924 GGCAAGAATTTTaatggaagaaaag-aaag------------------------------------------tAGGA----TACATATAGAGTTTAAAC----AAGA--AATTGGGGAGGAAAAAGAAAGCTGTAAGA---CTATTA----TTTGAAGGCGAtg------taaaagaa---aagaa---gagcgAAAGCGgtggtgtgtgtgtgtgtgtttgaaAGAGGAAATTAAAGCCGGCTTAATTTCTCATCAAGTTTAA----ACATGACAAGAAGCGACTAGAAG--AAGCAAAGTTTTCGAAAT---TACTAT--GTATT-CGATTTTCAAGGAAAAAGACACAACGTTTAGAACATTTTAAACGAAATCTAG
i caeJap4.Scaffold54    I 1626 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I

a score=294.000000
s ce10.chrX               427477 3 + 17718866 GTG
s caeRem4.Crem_Contig24   270620 3 -  1162296 ATG
i caeRem4.Crem_Contig24 C 0 I 666
s caeSp111.Scaffold629   5017787 1 - 33334924 --g
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54       44471 3 +   258924 AAG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20987954 563 - 21540570 I

a score=-6966.000000
s ce10.chrX               427480 128 + 17718866 --TAGCTTACAGACAAAAATCACAGCTGGAATGAAAAATGAAGTAGT--GATTTTG-----------------------------------------------------------------------CTCTTCGTTGAAGAGAAAT-----TGTGGG-------------------------GCACTGAAGATCAG----------------------------------GAATTCAAGGGG----------TACACCAGTATGACGGTTAAAGAAG
s caeSp111.Scaffold629   5017788 259 - 33334924 ----------agacaaaaaaaa-----ggaaatagcAAGGAAATGac--gttttttaaaactatgttttttttggcgGATTACGGTATATTAGGTTAGTATTAGATAGGAGGGTTACAAAGCAGGACCTCTtctttgaagagaaaacagaatatGGGTTCATAAATC-ACGAACAGCtagaagaattgaagatCAGAACAAAACAGACACCAGTAATCAATTTAAGTGGGGGATTCAGGGGAAAGTCGAGGTTACACTCAAATCAAGGTCCAGACAG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54       44474 138 +   258924 AACTGGTAATAGAAAAATACCACTCAAAGAATGGG--AGGAAATAATTGggttttt-----------------------------------------------------------------------ctc--------agaaaaac----------aTCCATAAAACTACTAGTAAAGATGAATATTGCAGATCAGAA--------------------------------ACATTG----------------TACACCAGTATTGATGTTAAAGTAG
i caeJap4.Scaffold54    C 0 I 43
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20987954 563 - 21540570 I
e caeRem4.Crem_Contig24   270623 666 -  1162296 I

a score=-1645.000000
s ce10.chrX               427608 39 + 17718866 GAAC-------------------TATTGATG-----------------TGAAAAAC---------------TTAATGTTCTTTCG----AAATT
s caeSp111.Scaffold629   5018047 94 - 33334924 AAACAGGATCCTTTAGAGAGTTGTTTTGATTATTAAATGAGTTGGGCttaaaaaatcccaaaacatttctgtttctgtCCTGTAACCTCAAATC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e caeJap4.Scaffold54       44612 43 +   258924 I
e cb4.chrX              20987954 563 - 21540570 I
e caeRem4.Crem_Contig24   270623 666 -  1162296 I

a score=-1377.000000
s ce10.chrX               427647 35 + 17718866 -AAAGATAATAAGATTT-------TGAAAAAAGTTGGAAATTT------------
s caeSp111.Scaffold629   5018141 33 - 33334924 -GAAGTAAACCGGGCtt----gattggaaaa-----gaaatgt------------
i caeSp111.Scaffold629  C 0 I 3
s caeJap4.Scaffold54       44655 53 +   258924 AGAGACTAAACAGTTTTTGTGGAATGGGAAAAAA--GACATTTCTTTGATTATTT
i caeJap4.Scaffold54    I 43 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20987954 563 - 21540570 I
e caeRem4.Crem_Contig24   270623 666 -  1162296 I

a score=31.000000
s ce10.chrX               427682 3 + 17718866 TAA
s caeJap4.Scaffold54       44708 1 +   258924 --A
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       75210 3891 +   193288 I
e cb4.chrX              20987954 563 - 21540570 I
e caeSp111.Scaffold629   5018174 3 - 33334924 I
e caeRem4.Crem_Contig24   270623 666 -  1162296 I

a score=74113.000000
s ce10.chrX               427685  92 + 17718866 TTTTATACGAAAACCTTCTGCTCAAGCTTTTCCTGCATTCCATTCAACAATCGCTTGCATTTTGCACGTCGATTTTTGAACCAGATCTGCAA----------------
s cb4.chrX              20988517  92 - 21540570 TTTCACACAAACAACTtttgttcgattttttccTGCATCCCATTCAACAATCTTTTGCATTTTGCACGTCTGTTCTTGAACCAAATCTGTAA----------------
i cb4.chrX              I 563 C 0
s caeRem4.Crem_Contig24   271289  92 -  1162296 TTTCACACGAATAGTTTTTGTTCCATCTTTTCCTGCATCCCATTCAAAAGTCTCTTGCACTTGGCGCGTCTGTTCTTGAaccaaatctgaaa----------------
i caeRem4.Crem_Contig24 I 666 I 1
s caeSp111.Scaffold629   5018177  92 - 33334924 tCTCACACGTAGAgtttttgttccattttttcttgcatCCCGTTAAGTAGTCTTTTGCATTTTGCGCGACGGTTTTTGAACCAAATCTACaa----------------
i caeSp111.Scaffold629  I 3 I 38
s caePb3.Scfld02_254       79101  92 +   193288 TCTCACGCAAAAACCTTGTGCTCAAGCTTGTCTTGCATCCCATTCAGTAACCTTTTGCATTTCGCACGCcgatttttgaaccaaatctgaaa----------------
i caePb3.Scfld02_254    I 3891 I 10
s caeJap4.Scaffold54       44709 108 +   258924 CTTCACACAAATACTTTTTGATCCATCTTCTCCAGTAGACCATTTTGCattcttttgcattttgctCTTCTGTTTTTGAAccaaatctaaaaaaaaagaaaagaataa
i caeJap4.Scaffold54    C 0 C 0

a score=-8636.000000
s ce10.chrX               427777 38 + 17718866 -TTCGAATTCGATAACTAGTAATCAGTATTAATATAGAA
s cb4.chrX              20988609 27 - 21540570 --------GAAAAATATgg--attatcaaaaatctaa--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   271382 34 -  1162296 -ttcaaatttaagtAATAG--TTAAGCAATTATACAG--
i caeRem4.Crem_Contig24 I 1 I 1
s caePb3.Scfld02_254       79203 22 +   193288 -TTCTTTTGAAACTAATGG--AGAA--------------
i caePb3.Scfld02_254    I 10 I 1
s caeJap4.Scaffold54       44817 27 +   258924 tTTTAATTGCAACGACTTT--TTAATAAA----------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   5018269 38 - 33334924 I

a score=187520.000000
s ce10.chrX               427815 198 + 17718866 TATT-----ACCTTCACATTGTGCTGACTAATATGCGGATAATTCTCTCGATAAGCGCAGTTGTTCAAGCATTGTGTGTACTGATCGATTTGCATCCATGTCGGGTGAGGATTCTCTTCGAACCATTTTTCGAGGACGGGTAGCTCGGTGAGTGGGTCGAACATCAGGCGTGAGCGAGCCGCTGAAAACACTAAAACGGAGA----T
s cb4.chrX              20988637 201 - 21540570 ttttattA-ACCTTGACGTTGTGTTGACTGATATGCGGGTAGTTTTCCCGGTAGGCACATTGGTTCAAGAATTGAGTGTATTGATCGATTTGCATCCAGGTTGGGTGTGGGTTCTCCTCGAACCACTTCTCGAGGACTGGCAATTCGGTGAGTGGATCGAACATGAGACGAGAGCGAGCTGCTGAAAAAACTAAAccggaaa-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   271417 202 -  1162296 TTTTAGGGTACCTTCACGTTGTGTTGACTGATATGCGGGTAGTTTTCCCGGTAGGCACAATTGTTGAGACATTGGGTATACTGATCGATTTGCATCCAGGTTGGGTGTGGGTTCTCTTCGAACCATTTCTCAAGGACTGGCAGTTCGGTGAGTGGGTCGAACATGAGACGAGAGCGAGCCgctgaaaaaactaaaacagaGA-----
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   5018307 198 - 33334924 CTAT-----ACCTTGACATTGTGCTGGCTAATATGTGGGTAGTTCTCTCGGTAAGCGCAATTGTTGAGGAGTTGGGTGTACTGATCGATTTGCATCCAGGTTGGGTGtggattttcttcaaaccaTTTCTCGAGTACTGGCAGCTCGGTGAGCGGATCGAACATGAGACGAGAGCGAGCTGCTGAAAAGACTAAAACGGAGGT----
i caeSp111.Scaffold629  I 38 C 0
s caePb3.Scfld02_254       79226 201 +   193288 TTTC-----ACCTTGACATTGTGTTGACTGATATGTGGATAGTTTTCCCTATACGCACAATTGTTCAAGCATTGTGTATATTGGTCGATTTGCATCCAAGTTGGGTGCGGATTCTcttcaaaccatttttcaagaacAGGTAGTTCGGTAAGTGGGTCAAACATGAGGCGGGAACGAGCGGCTGAAAACACTGAAACAAAAGATTG-
i caePb3.Scfld02_254    I 1 I 87
s caeJap4.Scaffold54       44844 195 +   258924 --------TACCTTCACGTTATGCTGACTGATATGAGGATAGTTCTCTCTGTACGGACAGTTGTTCAGCATCTGCGTGTACTGATCGATTTGCATCCACGTGGGATGTGGATTCTCTTCGAACCATTTTTCAAGGACAGGAAGTTCGGTGAGAGGATCGAACATGAGACGTGAGCGAGCTGCTGAAAATACTAAAAAAGAAGT----
i caeJap4.Scaffold54    C 0 I 25

a score=0.000000
s ce10.chrX               428013 3 + 17718866 TAT
e caePb3.Scfld02_254       79427 87 +   193288 I
e caeJap4.Scaffold54       45039 25 +   258924 I
e cb4.chrX              20988838 0 - 21540570 C
e caeSp111.Scaffold629   5018505 0 - 33334924 C
e caeRem4.Crem_Contig24   271619 0 -  1162296 C

a score=-11974.000000
s ce10.chrX               428016 87 + 17718866 TTGCTTTATCGTTGAATTTTTTCAAACGTTCCGCGTCAGTGATTTTATCGAAAAATAGAAGTAAAATTCCACCTTAAAGTTTTCTT----G
s cb4.chrX              20988838 31 - 21540570 ---------------------------------------------tatgaaaaagtgtaAA--------------GAAATTGTTTCTCTG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   271619 25 -  1162296 ---------------------------------------------TATTGACACTGGAAAA------------CTTAAGTTG---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018505 24 - 33334924 -----------------------------------------------------attgaatat---------tcttttttttgtttc-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       79427 87 +   193288 I
e caeJap4.Scaffold54       45039 25 +   258924 I

a score=329.000000
s ce10.chrX               428103 2 + 17718866 TC
s caeRem4.Crem_Contig24   271644 2 -  1162296 TC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018529 2 - 33334924 cc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       79427 87 +   193288 I
e caeJap4.Scaffold54       45039 25 +   258924 I
e cb4.chrX              20988869 0 - 21540570 C

a score=-2359.000000
s ce10.chrX               428105 116 + 17718866 GAAAAGATAGAGAATTTTTATGCAGTCATTTTTCATATGCATAGCAAACGCAATCTAAGAGCGTTTTAGAGATAGCAACCAATATAGGTTTTCAGACTGAGTATCATGAACATGGC
s caeSp111.Scaffold629   5018531  31 - 33334924 gAGAA----------------------------------------------AATCTAA-------TTGGAGC---------ATAT------------------CCGTGAAC-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       79427  87 +   193288 I
e caeJap4.Scaffold54       45039  25 +   258924 I
e cb4.chrX              20988869   0 - 21540570 C
e caeRem4.Crem_Contig24   271646   0 -  1162296 C

a score=-2490.000000
s ce10.chrX               428221 33 + 17718866 CACCTTCTCGATAAGTTTGAGCCAGTACAAAAT
s cb4.chrX              20988869 29 - 21540570 CTCCTAGTCCCTAATTGT---CCTGTTCGAAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5018562  7 - 33334924 ---------------------CTTTCTC-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       79427 87 +   193288 I
e caeJap4.Scaffold54       45039 25 +   258924 I
e caeRem4.Crem_Contig24   271646  0 -  1162296 C

a score=3607.000000
s ce10.chrX               428254 233 + 17718866 CCCTAGAATATTTCTCAAAATCAAGTTTGCAGTTGATTTTCTGTTTTATTTCTGTAAACACAATACCTAGCCTCATTTTTTTTTCCTCAGATCTCAGTGATCGTAATGGTTGTCTGTGCGAAATTCGACGCCCCACATTTCTCC---------------CTTTGTTATGTGTCT--------TCGCGCACTTtgtgtatgtctatgtgtgtttgtgtgtgtgtgC---TCGCTTCTAATTTATGAGTTCTTGGTTCAAC---
s cb4.chrX              20988898 174 - 21540570 --------CATTT-----------------------------------TCTCTGTGGGAACA------------------------------CTATGAGA---------TAGTC--CGCGAAATTTGACGCCCTACTTTTTTCCACTGCCTCAA--AGCCTTTGTTA--TGTCTGCTTTGCGCTGCGCAATTTGTGTATCTGTGCTTGTTGATGTGTTTGTGTGCTTGCTTCTTTTAATTTATGAGTTCTTGCTCTGCTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   271646 184 -  1162296 CCCCAAAGCATTGAAT----TCG----------CGGAT----TTTCAATCCTTGTAAAAGCG------------------------------CTCAGCGACTTT-----CTTTC--CTCGAAATTTGACGCCctacattttttc-ttgttccaaCCCGCTTTTGTTATGTGTCTGTTCTGCGCAGCGCGATTTGTGTATGTGTGTCT---------------------CCGCTTCTAATTTATGAGTTCTTGCTCT-TTCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018569 155 - 33334924 ---TCAAGAAGTTCTC----TCA-------AACCGGCTCCCCCTTAGCTTCTTCTAAATGAA------------------------------CGCAGTGA---------TTGTC--CGCGAAATTCGACGCCCTAG--------------------AGCCTTTGTTGTCTTTCtaatgtg------------tgtgtgtctgtgcgc--------gcgtgtgtgC---TCGCTTCTGATTTATGAGTCCTTGG---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       79427  87 +   193288 I
e caeJap4.Scaffold54       45039  25 +   258924 I

a score=-10532.000000
s ce10.chrX               428487 50 + 17718866 CCATCTCCCTCTCTTTTCCGTTAGCCTGTCTGTTTTAAAGCTCT------TTGTTG---------
s cb4.chrX              20989072 33 - 21540570 CTAGATCCC-------------ATAGTGTCATTTTG----TTCC------TTGTTG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   271830 39 -  1162296 C--GATcccccccTT---CCAAACATTGGCATGT------CTCT------TTGTTG---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018724 10 - 33334924 ----------------------------------------CTCT------TTGTTG---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       79514 40 +   193288 -----------------------CTAcgtccttttt--ttctctatgaagtttttgagtttctat
i caePb3.Scfld02_254    I 87 C 0
e caeJap4.Scaffold54       45039 25 +   258924 I

a score=82856.000000
s ce10.chrX               428537 229 + 17718866 TACCTGATGAGTTGGCGTTTTGCATGGAGTTGGTGGATGATGAGTGGGTGCTGAATGCTCCGAGGTCGAGCCCGCTGAGAAGCTTTGGGGAGGTCGAGGACAATGATTCGCGCATTGAGTTTGCCATATCCGGGGAGGATGCAATTGAATCCTGTA----GGAAATGTTGCTTGTTTTGGGATGAATAATTTTTAAAGGTGGACCATAATTGTGTCGAAAAATATTTTTAATT
s cb4.chrX              20989105 165 - 21540570 TACCTGATGAGTTGACATTTGACATCGAGTTGGTGGAAGACGAATGGGTGCTGAACGATCCAAGATCCAATCCACTGATCAACTTTGGGGAAGTTGAGGAGAGAGATTCGCGCATCGAGTTGGTCATTTCTGGAGAAGACGCGCTAGATTCCTGAAAACGGAGCA--------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   271869 173 -  1162296 TACCTGATGAGTTGACGTTTGGCATCGAGTTTGTGGAGGATGAATGGTTGCTGAATGATCCGAGGTCCAGTCCACTGATCAACTTTGGCGAGGTGGAAGACAAAGATTCGCGCATAGAGTTGGACATGTCTGGGGAAGAAGCAGTTGACTCctggaactgaaaattattgatt------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018734 162 - 33334924 TACCTGATGA------GTTTGGCATCGAGTTTGTCGAGGATGAATGAGAGCTGAACGATCCGAGGTCCAAACCACTGATCAGTTTTGGGGAGGTGGAAGAGAGCGACTCGCGCATCGAGTTTGACATGTCTGGGGAGGAAGCCGTGGAGTCCTAAAA---GTAATTTTAAT--------------------------------------------------------------
i caeSp111.Scaffold629  C 0 I 9
s caePb3.Scfld02_254       79554 226 +   193288 TACCTGATGAATTTACGTTCGGCATAGAATTGCTCGAAGAAGAATGTGTACTAAACGTTCCAAGGTCCAAACCGCTAATAAGCCTTGGAGAAGTGGATGATAAAGACTCCCTCATTGAAGTTGACATATCCGGAGATGAAGCAGTTGAGTCCTAAAAATCGTAATTATAGTTTGTAC--GCAACAATATTTTCTacct-----ccttttgttttttgaaaaatttatctaGAG
i caePb3.Scfld02_254    C 0 I 31
s caeJap4.Scaffold54       45064 136 +   258924 TACCTGATGCAGACACATTTGACATGGAA---GCAGACGAAGAGTTGGTGCTGAAAGAGCCCAAGTCAAGACCACTTGGAAGCTTTGGCGATGTTGATGACAAAGATTCGCGCATTGAACTTGTCATGTCTGGAGATGA----------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    I 25 C 0

a score=-30491.000000
s ce10.chrX               428766  94 + 17718866 -GGCGCTCAGCCGACGCTGACAGTTTGGAATAAATTCA------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTTCGGCCGTAGTGTTAGGTCTTTATAACCTTATCGGTAATATTTAGCAATTTG
s cb4.chrX              20989270  25 - 21540570 -----------------TCGTAAT-----AAAACTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCATTTG-------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254       79811 238 +   193288 -GCCAAGTAGT--gcattgataag-----aaaaattcaagaaaagttgTTAATTTGGCGATTGCAATGCAttgcgaaaaagaaaattcctaacGCGAAGAAAACTTGGAAGGTCTATCTCATTTCCTTTAGGCGTGACACAAATACACTCCGAAacgtttttagaaaaaaaaacaattccgaaaaaaagaagagaatcagCATCAGCACGTGTACCTTTGGAAAGCGCAACC-----CTTTTAGTAATTGG
i caePb3.Scfld02_254    I 31 C 0
s caeJap4.Scaffold54       45200   6 +   258924 AGCCGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   5018896   9 - 33334924 I
e caeRem4.Crem_Contig24   272042   0 -  1162296 C

a score=-1509.000000
s ce10.chrX               428860 23 + 17718866 GGAGATGTTATCTTTAATGTGAA
s caePb3.Scfld02_254       80049 19 +   193288 TGAAACTATTCTTCCAA----AA
i caePb3.Scfld02_254    C 0 I 45
s caeJap4.Scaffold54       45206 11 +   258924 ------GCTTTCCTGAA------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20989295  0 - 21540570 C
e caeSp111.Scaffold629   5018896  9 - 33334924 I
e caeRem4.Crem_Contig24   272042  0 -  1162296 C

a score=-31969.000000
s ce10.chrX               428883 101 + 17718866 TCA------------------------------GAATCGAAATAGCCGAAAATCCGTTTTTAGCGTGATT---------TT-----TCAAAGCTTTTCAGCACGAGCAACGCTAATCAACCTAACTATGGCACAAACAGTCAAAC
s caeRem4.Crem_Contig24   272042  22 -  1162296 tca------------------------------gaattaaaaaa---------------ttaatgtg------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018905  14 - 33334924 CCa---------------------------------------------------------caatattatt--------------------------------------------------------------------------t
i caeSp111.Scaffold629  I 9 I 4
s caePb3.Scfld02_254       80113 115 +   193288 TCAGATTCTCTTCGAGAAGCGCTTGTCGTGAAAAAGTTTATCAA---------------TTAATACCATTAAC--CCCGTT---------AACTTTTGACTACT-GAGTTGGTAATGATCCCTTATTTGGAATAAC---TCAAAT
i caePb3.Scfld02_254    I 45 I 8
s caeJap4.Scaffold54       45217  35 +   258924 ---------------------------------------------------------TTTTAGTTTTATTAATTACACgtttaaaatcaaaa-----------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20989295   0 - 21540570 C

a score=158888.000000
s ce10.chrX               428984 317 + 17718866 GTAACTTACAATTTCCGGTTCTGGTTTAATATTGATGGAAAACAAAGTATCTTGAATAGTTTCATCTGAATTGCTATGAATCTCATCATCGGCTGGAGATGGCGAGTCGGAGCCGCCGACAATCTTGGTTTCATCCAGTTTGTCGT------------AAAAATCAAATTTTTGACGTTGTT------CT------CCAAACAGGGACTGGAGCAAGTTGAGTTGGAATCCCGG---GAGCAGCTG---CGCCGCTGTCTGAGCTGACGAG------ACCTGCACTAGGTCTACTGGAGCT---AAGGTACGGGAACTCGAGCGTTTTTGTGTGAACCAATTGCAAATCTGGAAAT
s cb4.chrX              20989295 328 - 21540570 GTCACTCACCATTTCCGGCTCGGTCTTGATGATCATAGGGAAACCACTATCCTGGATAGTCTCATCAGAATTGCTGTGGATTTCATCATCGGCTGGAGATGGAGAGTCAGATCCTCCCAAGATTCTGTTTTCATCGAGCTTCTCGTTCATGATg---gagaaatcaaattttggacGCTGCG------CATC---GCCAAAGAGACTTTGAAGCAAATTCAACTGAAGTCCCGG---TAAGAATTGATTTGCTGGTGCCGATGTGGGTGGG------ATTTGAACTGGGTCCACTGGAGTGATTGTGCTCCTATTGCTGGCAcgtttttgagaaaaccaaTTGCAGATC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   272064 329 -  1162296 --aACTCACTGTTTCTGGCTCTGGCTTGATGTTCATAACAAACATATTATCTTGGATAGTCTCGTCAGAGTTGCTATGAATCTCGTCGTCAGCTGGGGATGGAGAATCGGATCCTCCCAGAATTCTGTTATCATCTAGTTTCTCATTCATCAGA---GAGAAGTCGAATTTCGGTCTTGGCTCAACTCCAAC---TCCAAAAAGTGACTGGAGAAGGTTCAGCTGGAGACCAGG---CAAAAGTTGAGAGGCGGTTGTTTGAGCAGGTGTT------ACTTGAACGGGGTCAGTTGGAGCG---GCGCTTCGGTTGcttgatcgtttttgagagaaCCAGTTGCACATT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5018923 330 - 33334924 -----ttaccATTTCTGGCTCTGGTTTGATATTGAGAGCGAAAATATTGTCTTGAACGGTTTCATCAGAGTTGCTATGAATCTCATCATCAGCTGGGGATGGGGAGTCAGATCCTCCCAGAATTCGATTCTCATCGATCTTCTCGTTTATAagc---gaaaaatcgaatttcgatCGTTGAT------CT------CCGAAAAGGCTTTGGATGAGGTTGAGTTGGAGTCCTGG---CAAGAATTGAGCAGCTGCGGATGCTGTAGTAGCTGGAGCAACTTGAACTGGATCAACTGGAGCG---GCACTACGATGACTGGCACGCTTCTGGGAGAACCAGTTgcaaatctgaaatt
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_254       80236 332 +   193288 GGAACTTACCATCTCTGGTTCTGGCTTTATGTTCATAGCAAAAACAGACTCTTGCATTGTTTCATCGGAGTTGCTGTGAATTTCATCATCAGCTGGTGAAGGCGAATCAGAACCTCCCAAAATTCTATTCTCGTCAATTTTATCCGCcatcaaa---gaaaaatcgaattttggtCGCTGGT------CTCC---GCCGAAGAGACTTTGTATCAAATTCAGTTGAAGTCCCGG---CAAAAATTGAGGCGCTGTTGCGGGTACAACGGGT------ACTTGGACTGGATCGCTCGGAGCA---GCACTGCGATTTCCAGCACGTTTTTGGTAAAACCAATTGCAAATCTGAATAT
i caePb3.Scfld02_254    I 8 C 0
s caeJap4.Scaffold54       45252 323 +   258924 agtacTAACTGCTTCTGGTTCAGGCTTAATT------GCAAACGCTACATCCTGGTTCGTTTCATCAGAGTTACTGTGAATTTCGTCATCAGCTGGCGACGGGGAATCGCTGCCTCCCATCAGTCTTGGATCATCATTCTTTTCATTGATAAGATTCGAAAAGTCAAATTTTGGGCGTTGGT------CGGCATTTCCCAGCAACGAGTGTAGAAAACTGAGTTGGAAACCAGGATTAATAAGTTGAGCTGCTGTAACC------------------GCATGAATTGAATCCACATTTGGC---ATTTTACGGTTTTGCGAACGCTGCAGTTGGAACCAATTGCAAATCTGAAAAT
i caeJap4.Scaffold54    C 0 I 372

a score=-3609.000000
s ce10.chrX               429301 35 + 17718866 TCATTTGATTAATGGAGTAATATGTAGGCGCATTA
s caeSp111.Scaffold629   5019253 31 - 33334924 tttctcattttggaTAC----TGTATGTTGCAGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       80568 33 +   193288 ACATACAGGTGAGACACACATCGAATG--AAAGTA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       45575 372 +   258924 I
e cb4.chrX              20989623  0 - 21540570 C
e caeRem4.Crem_Contig24   272393  0 -  1162296 C

a score=151082.000000
s ce10.chrX               429336 175 + 17718866 AATTCACCTGTTGATAGCTGATCTTGGAATTGTTCTTTCTGAACGGACTCTGATTGAGCTGGCTTAAGTAATTGTTCATTTTTTGTTTAGATGGATTTGCATCGGATTTGAACCATTTATCAAGACGTGGAATTTCGTAAAGAGTGTTGAATCTTTGTACTTGTGTTGGGCTGAA
s cb4.chrX              20989623 167 - 21540570 --------TGTTGATAGTTGATTTTCGCATTATTTCTTCTGAATGGACTTTGATTGAGCTGATTGAGATAGTTGttcattttctgtttcgaTGGGTTCGCATCCTGCttgaaccatttttccagCCGAGGAATCTCGAAGATTGTGTTGAATCGTTGCACTTGTGTCGGACTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   272393 167 -  1162296 --------TGTTGGTAGCTGATTTTCGAGTTGTTTCTGCGGAATGGACTTTGATTCAGCTGGCTCAAAtagttattcattttttgtttcgatggATTTGCGTCCTGTTTGAACCATTTCTCAAGTCGTGGGATTTCGAAGAGGGTGTTGAATCGTTGCACTTGGGTTGGGctgga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5019284 175 - 33334924 ATCGTACTTGTTGGTAGCTGATTTTGGAGTTGTTTCTGCGGAACGGGCTTTGGTTGAGTTGGCTGAGATAGTTGTTCATCTTCTGTTTCTGTGGATTTGGATCTGCCTTGAACCATTTTTCCAGACGTGGGATCTCGTATATTGTGTTGAAGCGTTGCACTTGAGTTGGGCTGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       80601 175 +   193288 ATTGAACCTGTTGATAACTAATTTTAGAGTTGTTTCTACGGAACGGACTCTGGTTTAGCTGACTGAGATAATTGTTTAGCTTTTGTTTAGACGGATTGGCATCGgatttgaaccatttttcaagTCGTGGGATTTCATAGATTGTGTTGAACCGTTGGGTTTGAGTtgggctgaa
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       45947 175 +   258924 AACTAACCTGTTGGTAGCTGATCTTCATGTTATTTCTTCGAAATGGGCTCTGGTTAAGCTGACTCAGATAGTTGTTCATTTTCTGTTTGCTCGGGTTCGGATCCGATTTGAACCATTTCTCCAATCGTGGAACTTCGAACAATACATTGAATCGTTGTACTTGTGTTGGGCTGAA
i caeJap4.Scaffold54    I 372 I 294

a score=910.000000
s ce10.chrX               429511 1 + 17718866 A
s cb4.chrX              20989790 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   272560 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5019459 1 - 33334924 A
i caeSp111.Scaffold629  C 0 I 79
s caePb3.Scfld02_254       80776 1 +   193288 a
i caePb3.Scfld02_254    C 0 I 2
e caeJap4.Scaffold54       46122 294 +   258924 I

a score=782.000000
s ce10.chrX               429512 3 + 17718866 TTA
s cb4.chrX              20989791 3 - 21540570 ATA
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig24   272561 3 -  1162296 ata
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_254       80779 3 +   193288 tta
i caePb3.Scfld02_254    I 2 C 0
e caeJap4.Scaffold54       46122 294 +   258924 I
e caeSp111.Scaffold629   5019460 79 - 33334924 I

a score=819.000000
s ce10.chrX               429515 3 + 17718866 AAT
s caeRem4.Crem_Contig24   272565 3 -  1162296 aat
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_254       80782 3 +   193288 aat
i caePb3.Scfld02_254    C 0 I 1000
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20989794 64 - 21540570 I
e caeSp111.Scaffold629   5019460 79 - 33334924 I

a score=181.000000
s ce10.chrX               429518 18 + 17718866 ACATACATTATTATGTGT
s caeRem4.Crem_Contig24   272568 18 -  1162296 ttttattttgttactTAT
i caeRem4.Crem_Contig24 C 0 I 37
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20989794 64 - 21540570 I
e caeSp111.Scaffold629   5019460 79 - 33334924 I

a score=0.000000
s ce10.chrX               429536 496 + 17718866 ACTGAAAGTAATATGAAAGCAGGCGTTTATCTTTCTTGAGAGTGGAATGAAAAGAAAATCATGtagcgtatttcttctatttgtattgcacccgactacctaactttgaaacgttatatcttaattcattttaaagagtataaatacactttaaagatatacatatatttttaactacgaatctatagaaaaataactgaaaaaatattttgttagttaacaacttcgaatagcacaaacgataactgagatataaacagttaaagttgaacaatgtggtacaatacaaatagaggaaatacggtGTAATTACTCGTATACAAGTTTTTTGTAAGGATAGTTTTTAATCATTTTTTACTGACACTTTTTCTCCAATCACGACTCCATTCTGATAGTTATACTGGGTCCCCTTCTTCTTGTTTTTgcgccccccccccccccccgggTAACAGTTTGGATATATCACTGTATGCACACAACGCATTCAATCTCCCTT
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20989794  64 - 21540570 I
e caeSp111.Scaffold629   5019460  79 - 33334924 I
e caeRem4.Crem_Contig24   272586  37 -  1162296 I

a score=91.000000
s ce10.chrX               430032 1 + 17718866 T
s cb4.chrX              20989858 1 - 21540570 T
i cb4.chrX              I 64 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e caeSp111.Scaffold629   5019460 79 - 33334924 I
e caeRem4.Crem_Contig24   272586 37 -  1162296 I

a score=1761.000000
s ce10.chrX               430033 9 + 17718866 TTCTATTCT
s cb4.chrX              20989859 9 - 21540570 TCTTATCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   272623 9 -  1162296 TCTTATTCT
i caeRem4.Crem_Contig24 I 37 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e caeSp111.Scaffold629   5019460 79 - 33334924 I

a score=11400.000000
s ce10.chrX               430042 203 + 17718866 TTATTACTCTTTACAGAATGCGTCACCGCCGTCC------------TTTCCCATTTTGCCCTTTATTCTGCTGTTCCCATTCCCTCAGAGCAATATGTACATGTTTTGTATCCTCTCTTGTGTCTGTA------TGTCACA-ATAAGATTACTCACAACACAACTCAATTATTT--------------GTACAGTTGG---AAATTCGAAAATTTGGATGTGCTTCGATGAC----TGGAAAA-
s cb4.chrX              20989868 159 - 21540570 TTATTACTTTGCAAAGGATGTGTCAGCGTTT---------------CTTCTCATCTCCACTTTT------------------------------GTATA---GTTTTGTATATCTACGTATGTTCACCCCCTCGTCTTACAGACAAGATTACTCATAAAG------GACAGTTC---------GAAAGATACggtgag---------aaaa-------tgttttacgA-GAC----TTGAAAA-
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig24   272632 200 -  1162296 TTATTACTCCGTACAGAATGCGTCACTAGTTGTCCTTTCATATGTCtttcccttttcctttttt----------------tccctcAGAGC--AATATACATGTTTTGTATCTCCCC---TGTTTGCC------TCTCACA-ATAAGATTACTCATAAAG------GACTGcttgagaaagaagaaaaatacagtaaa----aCTTCAAAA----GCGTATATAGGAA-GACAAAgctgaaaa-
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   5019539 187 - 33334924 TTATTACTCTTTGCAGAATGCGTCATC-------------------CTGTACATTTCCTTTTCC----------------ACCCTCAGAGCTTTGTATACATGTTTTGTATCC-------CGGTCTCTCCCGCTTCTCACA-ATAAGATTACTCATAAAG------AAAGTGTTTGAAAGGCGAAAGTATACAGCAAGGTGTATCTCAAAA-------TGGTGGTCGA-GACAAAGCTGAAAAA
i caeSp111.Scaffold629  I 79 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I

a score=-2048.000000
s ce10.chrX               430245 36 + 17718866 -CTTGATTTCA---------------GCTTTTTCTTTTTCCTTTTTTCTTCT
s caeRem4.Crem_Contig24   272833 38 -  1162296 -ctgaattttgaatctttttagGAATGCGATTCCTTTAG-------------
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   5019726 19 - 33334924 CCAGAATTTCA---------------GCCATTGC------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990027 17 - 21540570 I

a score=19978.000000
s ce10.chrX               430281 317 + 17718866 CGTTGGAAGAAGGAGTTTCAAT--------AAAGGAATATGTGG---------------AAAACAACTGTCTCCATCACTTATAATTTGACT---------------------TCTTCCCTTTGTTGTCT-CGGGAATGTAGATCAG-------------CAGGCAGTGGCAGTTTCAGAGATGTTTTCA-CGGGTCAACAA--------------------------------------GGGGCCAAAACCAGTCCT-----------GATCTCTTAGCCTCCTTCTCTTGAGAAATTGAGAAAGACACAATGGCA-----TGATGGAGGGCACTTAGAGAACG--------------ACCGAATTTGAT-CG-TTTTGTCT-TTTGTCTCGTTTTTTTTTTGAAATTAGCTATCTTCATCTCAGTCTAATACTGCTCTCTTATCC
s cb4.chrX              20990044 380 - 21540570 tgttgcaaaaaaaaacttgaatttgtCTTAAAAGAAAGA-GTACAAAATGGAAGCTTCCAAAACAA-----------GCCGATAATTTGACcccctccttttttttcat----ttctcgtCTCTTTGTGTACCAAAATGGACATGTA--TTTGGCCTCAGCAG--ATCAACAGTTTCAGAAGCCAGGGCGGCGGGTCAATAC--AAAAAACAGACAGTCGTTGA-------------CAACGAAGCAAAACCAGTCTTGCCTATTTCAAGATCGCTTAGCCCCC------------ATTCAAAAAGAGACAATACCA-----TGATGGAGGGTAATTAGAGGAAAACTAGGGAAATGACAACGAATTTGATCGGTTTTTGTCTCCTTGTT-CCT----------AAATTAGGTGTCTTCATCTCATCTCATC----CACTCTCATCT
i cb4.chrX              I 17 I 189
s caeRem4.Crem_Contig24   272871 362 -  1162296 TATTGgggaaagaaattgaaagcaGTCGCCAAA--------------------------ACAACAA-----------GCCGATAATTTGACCCCTTTCATACTTTCAACGATGTTTTCCCCTCTTTGTGT-CTAAAATGGACATGTATGTTTGGCTGTGTCAA--ATCAACAGTTTCAGAAGT--------GGGGTCAACCCGAGAAAAACAGATGGAAATAGAAGAACAACTTTCGAGACGAAGCAAAACCAGTCCT-----TCTCAAGATCGCTTAGCCCCTC-------ACAGATGAAAGGGATGACAATGGCATGTGTTGATGGAGGGCAATTAGGAGAAAACTAGGAA------ACCgaatttgat-agtttttgtcT-TTTGTC-CGC----------TAATTAGGTATCTTCATCTCTTGGCTGC------CTATAATCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5019745 251 - 33334924 ------------------------------AAA--------------------------ACAACAA-----------GCCGATAATTTGAcctctcttgttttt---------ctgtccCCCCTTTGTGT-GGACATGGGACACG----TTTGG------CAG--ATCAGCAGTTTCAGAAACTAAGACACGGGGTCAAAAT-----------------------------------------AGCGAAACCAGTCTT-----TC---GAATCGCTTAGCCGCCT-----CgagagatgaagatgatgacaaTGGCG-------------GGCAATTAGAGAC----------------AACGAATTTGAT-CGTTTTTGTCT-TTTGTCTCCC----------AAATTAGGTATCTTCATCTTTC------------TAATAATCC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I

a score=-12133.000000
s ce10.chrX               430598 339 + 17718866 GGGCATCAACCGTACTGTCAACCGGCTT--------------AGTGGAATTTATAGTTGA--GTTACGAAATAAAACTTGAGTTTTGGTAATTGTTAAATTCTGACAAGCCACATATTTGGTGAATCGTCTCCTAAAAATTTTAGATTTTCAAAA------------------ATTTTTGAACTCAACCATTTTAAGTTGGCAAATAATAGAAGGCGTACGGTGTTTTATTATTTTAGCACTAAGAACAAGGAAAATTTTTGGTACTTGTGGATTATTTCACCTCATTTTGaaaaaataaattttaacattttaa---aataaaaCCGT-----GTGTAGTTTTTTAT---TTTTAGGCTTAGaaaaaaaaaaaaaaaaaaaaa-
s caeRem4.Crem_Contig24   273233 308 -  1162296 AAAAATTAGT-------TCAATCGGGAGAGAAAACAGTCACAAGTGG---CACTAAGAGGATGTTGCGAAACGGCATTGGAATTCTG---------------TAACCGATTAGAAGTTTAACAAGTCCtattc-----attttgaactgataagagaaaaatgaaaatcctgtatttttgttcaaaatca-------------------aaaaat-----gtggtcTTGTCACTGTAATTATATAGtcattgtaattttttca---ttgtaaa------------atttcaataacA-AAATTTGGTTACTGTCACGGGGTATCGTTTTGGTCTTTGCAATTTTtcct------taaattttgaaaagaggacaaaaattatca-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5019996 235 - 33334924 AAAGATTAGT-------ACAATTGTGTG--------------TGTTG---CCAAAGATGGATGCAGT-------CATTGGAATGTTA----------------AACCGATTACggg---------------------------aaaatgataaaaaaaa--------------attttctgggataatca-------------------agaaatttcaagaatttttgtttcactaattttat----------------------ttatgaG------------ATATGAACGAGA-----TTaattattatga--aaatatgattat--CAATTGCAATTCATAATAAGatgtaattttcagaaaattaagaaaaattaagaa
i caeSp111.Scaffold629  C 0 I 31
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I

a score=-942.000000
s ce10.chrX               430937 56 + 17718866 aaaaaaaaaaaaCGTTTTCTG-----CTACGCAAATGGGTAATAAAGTAAAAAAAATCAAT
s caeRem4.Crem_Contig24   273541 38 -  1162296 acatAGGAAATA---TTTCTGAACAGCTCCATATTTTGG--------------------AT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I
e caeSp111.Scaffold629   5020231 31 - 33334924 I

a score=-125.000000
s ce10.chrX               430993 35 + 17718866 TTTATATAACGATTTTACAGTTTCAAACAATTTTT-
s caeRem4.Crem_Contig24   273579 30 -  1162296 TCTGTAT-----ACCTAAAATTCCCATTAATTACT-
i caeRem4.Crem_Contig24 C 0 I 41
s caeSp111.Scaffold629   5020262 25 - 33334924 tttatat-----ttttaatattccaa------actt
i caeSp111.Scaffold629  I 31 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I

a score=-519.000000
s ce10.chrX               431028 48 + 17718866 TATAGATTAAA------------CTTGTCTTCAAAGC--AATTCTTAGATACTTCGGTATAA
s caeSp111.Scaffold629   5020287 62 - 33334924 ccaaaattgaaaatcatacGTTACTTAGATTGGAAACTAACTTCTTCCTTTCTTCCCTCCGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I
e caeRem4.Crem_Contig24   273609 41 -  1162296 I

a score=-2107.000000
s ce10.chrX               431076 28 + 17718866 ACTAGTGTT---TCTAACTTCA-TTCACGTAT---
s caeRem4.Crem_Contig24   273650 23 -  1162296 ------------CCTCACGTTGCCAAAACCATTAA
i caeRem4.Crem_Contig24 I 41 C 0
s caeSp111.Scaffold629   5020349 32 - 33334924 ACACAAGTTTTCCCTCATTTCAACTTACCAAT---
i caeSp111.Scaffold629  C 0 I 2
e caePb3.Scfld02_254       80785 1000 +   193288 I
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I

a score=-48.000000
s ce10.chrX               431104 37 + 17718866 ATCTTCATCACTTTGC-----------CTTCCCCTTCCCATTG------A--ACCC
s caeRem4.Crem_Contig24   273673 44 -  1162296 -TCTTCTTCACACCCC-----------CTTCCCcttgtttctgtttcatagTGCGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5020383 54 - 33334924 ATCTTCATCACcctcctttctctcttctccccctttctttttgtttcaaa--gcAC
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_254       81785 34 +   193288 ATTCCCA--------------------TCCctcatcattcttcttttgaa--acgt
i caePb3.Scfld02_254    I 1000 C 0
e caeJap4.Scaffold54       46122 294 +   258924 I
e cb4.chrX              20990424 189 - 21540570 I

a score=3801.000000
s ce10.chrX               431141 57 + 17718866 ATCCC-----CTACTCTT------TTCCAATCCCAAACAATCATCGTTTTC-------------GCACATTGTGTGTGGGG
s caeRem4.Crem_Contig24   273717 62 -  1162296 ACCTT-----CT-GTCCGATTTCACCCTAATCCAAAACAATCATCGTTTTG-------------GCACATTGTGCTAGACC
i caeRem4.Crem_Contig24 C 0 I 40
s caeSp111.Scaffold629   5020437 38 - 33334924 ACCTC-----CT-GTCTG------TTCTAATCCAAAACAATCATCCCTCC-------------------------------
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_254       81819 43 +   193288 ACCTCTGTTTCC-CCCTT------TCTTAATCCTAGGCAATCATTTCTAT-------------------------------
i caePb3.Scfld02_254    C 0 I 6
s caeJap4.Scaffold54       46416 69 +   258924 ACCTT-----CC-ATTCT------TTTTAATCCAAAACAATCACTATTGTCGTCTTTCTCATTTGCACAATGTGTGTTGGG
i caeJap4.Scaffold54    I 294 C 0
e cb4.chrX              20990424 189 - 21540570 I

a score=36348.000000
s ce10.chrX               431198 79 + 17718866 GCTGTCACTAATAAGATGAAT-GGTG------------ATGATGGGCACCAAAGAAAGAG----------CAAATGATACAATCTGC------CGGCTTGTTAATCCC
s cb4.chrX              20990613 88 - 21540570 GCTGTCACTAATGAGATGAGT--GTG------------ATGATGGACCCGACAAAAAGAGAGGCACGAACAAAATGATACAATCTCT------TTCATTGTTAATCCC
i cb4.chrX              I 189 I 20
s caeRem4.Crem_Contig24   273819 81 -  1162296 GATGTCACTAATAAGATGAAT--GTG------------ATGATGGACCCGAAAGGAAAAGACG-------AAAATGATACAATCTGT------CTCATTGTTAATCCC
i caeRem4.Crem_Contig24 I 40 I 28
s caeSp111.Scaffold629   5020487 77 - 33334924 GGTGTCACTAACAAGATGAATGGGTG------------ATGATGGCACTCTT-----TAGGCC-------AAAATGATACAATCTGG-------TCCTTGTTAATCCC
i caeSp111.Scaffold629  I 12 I 13
s caePb3.Scfld02_254       81868 69 +   193288 GGTGACACTAATAGGATCAAT--TTG------------ACTATGGGTTTC-----------CG-------AAAATGATACAATCTGT-------TCATTGTTAATCCC
i caePb3.Scfld02_254    I 6 I 89
s caeJap4.Scaffold54       46485 97 +   258924 CGTGCCACTAATAAGATGAAT--GTGTTCGCGCAATGTGTCATGGTACCAAAGGG--GTGTCA-------CGAATGATACAATCTGCGGCAAGATGTGTGTTAATCCC
i caeJap4.Scaffold54    C 0 C 0

a score=-8807.000000
s ce10.chrX               431277 71 + 17718866 ------CGACG-------CCTATCCAT--------------TCTGATTGTTACGACACTTGAAAACAAAAGGCGGGTTTT----TGATGAAGAC-------AACCTCAG
s cb4.chrX              20990721 69 - 21540570 ------TGCCGAAA--TAACTATCCAT--------------TCATATTGATGCgt---ttcaaaacaaaaga--agTTTT------GCGGAGAT-------GAACCCGG
i cb4.chrX              I 20 I 17
s caeRem4.Crem_Contig24   273928 85 -  1162296 ------CGCCGAAA--TGCTTATCCAT--------------TTTGATTGCTACTTTG-TTCTAAATGAGAGATGGGTTTTCACAAAACGGAAATTGG-ATGGAACTTGG
i caeRem4.Crem_Contig24 I 28 I 26
s caeSp111.Scaffold629   5020577 61 - 33334924 ------CGCCG-------CTTATCCAT--------------TAGTTTCG---------TTTAAAGGAAGCGC------------AAAAGGAAATTGGCAAAGAAccaag
i caeSp111.Scaffold629  I 13 I 6
s caeJap4.Scaffold54       46582 89 +   258924 CTTTTTCTTCGAAAATCGGTTATCCATGGCCATGGGACATGGCCGATCATTAC-----TTCAAAATAATTAT--GGCCGC------ACCGCGCT-------TATCTCag
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81937 89 +   193288 I

a score=-24622.000000
s ce10.chrX               431348 102 + 17718866 GAAATTGAAATTCTGACGGGGGGGGGGGGGGAGCTCCAATGAATCCTTGCGGT---GGAAATTAAACGAAACTAAC-TATTTAAGTTAAGTCCTCTCTTTTCAGAT---------------------------
s cb4.chrX              20990807  68 - 21540570 GGAATCGAGACATTG--------------TGAGCTT-----GA-------------AGCAGTTTgtggaaattgga-attttg-----agtttgtcCCTTGCTAAA---------------------------
i cb4.chrX              I 17 I 1
s caeRem4.Crem_Contig24   274039  84 -  1162296 GGAATCGAAAAGATGA-----------GTCGAACTC-----GATTCtggagattctggagattcTCGGAAATTGGA-ATTCCC-----TTTCTTTCATGGTCTAAa---------------------------
i caeRem4.Crem_Contig24 I 26 I 1
s caeSp111.Scaffold629   5020644  56 - 33334924 gaaattgggTCCCTTG--------------GAACTT-----AATT-----------GAATCGGGGAGGGAATCGAA------------AGTTTTCACA-----------------------------------
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_254       82026  73 +   193288 GAAATTTAGTTTCTAG-------------CGAA--------GATC-----------GGAAGagactggaaattgaa-aatccagTATGAGTTTTCCCTTAGTTAAT---------------------------
i caePb3.Scfld02_254    I 89 I 44
s caeJap4.Scaffold54       46671  98 +   258924 gaaatttatttattta-------------caaactGTGA--GA-------------AGA-------GGAAATTGGAGGGTCTCTTCTGCTTCTGCTTTCTTCCAATGTTTGGTTCCCACTTTCAATTTCaaac
i caeJap4.Scaffold54    C 0 I 6

a score=-5984.000000
s ce10.chrX               431450 32 + 17718866 GTGAATAAGAATGCACAGACGTG----GAAAAGTAT
s cb4.chrX              20990876 14 - 21540570 -TCAAT---------------------TAAAACTAT
i cb4.chrX              I 1 I 27
s caeRem4.Crem_Contig24   274124 14 -  1162296 -ttaat---------------------tgaaaaaat
i caeRem4.Crem_Contig24 I 1 I 25
s caeSp111.Scaffold629   5020700  8 - 33334924 ----------------------------ACAAGAAT
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold54       46775 35 +   258924 gtggataaaaaaggccaaaaagtttacaaaaagaa-
i caeJap4.Scaffold54    I 6 C 0
e caePb3.Scfld02_254       82099 44 +   193288 I

a score=13916.000000
s ce10.chrX               431482 43 + 17718866 ATTGTTTATATGATATCCGATAGGAATCGGTTTT------ACCTGATAT-------------
s cb4.chrX              20990917 42 - 21540570 ATTGTTTATATGATATCCGATA-------GTTGCACTAATACCTGATAT-------------
i cb4.chrX              I 27 I 4
s caeRem4.Crem_Contig24   274163 36 -  1162296 AATGTTTATATGATATCCGATA-------GTTAC------ACCTGATAT-------------
i caeRem4.Crem_Contig24 I 25 I 4
s caeSp111.Scaffold629   5020709 35 - 33334924 --TGTTTATATGATATTGGATA------GCCCAT------ACCTGATAT-------------
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254       82143 36 +   193288 ATTGTTTACTTGATATCTGATA-------TCCGT------ACCTGATAT-------------
i caePb3.Scfld02_254    I 44 I 28
s caeJap4.Scaffold54       46810 37 +   258924 -----------aatatcaGGTA--------TCTC------ACGAGATAtgatttcaaaatat
i caeJap4.Scaffold54    C 0 C 0

a score=-7219.000000
s ce10.chrX               431525 27 + 17718866 CTAGAGACAGCAA----------AATTCCATCTCCTA
s cb4.chrX              20990963 17 - 21540570 CTGCA--------------------TCCCGTGAGGTA
i cb4.chrX              I 4 I 6
s caeRem4.Crem_Contig24   274203 25 -  1162296 CTACC--TATTCT----------ATTCCCATCCCCCC
i caeRem4.Crem_Contig24 I 4 I 6
s caeSp111.Scaffold629   5020744 23 - 33334924 CTAAA--TATCTG----------ATTCCC--CCCACC
i caeSp111.Scaffold629  C 0 I 8
s caeJap4.Scaffold54       46847 35 +   258924 ttgGG--TATCCGTTTCAATTATATTATCATCTTCAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       82179 28 +   193288 I

a score=1126.000000
s ce10.chrX               431552 25 + 17718866 AATTTCCCCA----AAAATTTATAAACAA
s cb4.chrX              20990986 25 - 21540570 AATCCTCTCC----GTAAATCATAAACAA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   274234 25 -  1162296 CATTCTATCC----CAATTTCATAAACAA
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold629   5020775 18 - 33334924 ---CATCTC--------ACCCCCAATAAA
i caeSp111.Scaffold629  I 8 C 0
s caePb3.Scfld02_254       82207 21 +   193288 ---AATCTCC-----AAATTTATaaacaa
i caePb3.Scfld02_254    I 28 C 0
s caeJap4.Scaffold54       46882 28 +   258924 -ATTCgcttccaaaaaattttataaacaa
i caeJap4.Scaffold54    C 0 I 23

a score=964.000000
s ce10.chrX               431577 2 + 17718866 AA
s cb4.chrX              20991011 2 - 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274259 2 -  1162296 AT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5020793 2 - 33334924 AA
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_254       82228 2 +   193288 aa
i caePb3.Scfld02_254    C 0 I 20
e caeJap4.Scaffold54       46910 23 +   258924 I

a score=-11532.000000
s ce10.chrX               431579 32 + 17718866 TGGGTGCTCTCTCATAACTTTTCCTTCAACCA-------------------------------------
s cb4.chrX              20991013 44 - 21540570 ----CATTCCACTG----TTTCCCCTCTTCTCG-----------------TTTCAAAGTCGCAGTTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274261 50 -  1162296 ----GGCT----------TGTCCCctcattttgaagaaaataagtCAGCCATCCAAA-----AGTTCCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5020796 25 - 33334924 -------------------------TCAGTGCAA----------------TTTCATA--AACAATTCT-
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_254       82230 20 +   193288 I
e caeJap4.Scaffold54       46910 23 +   258924 I

a score=244918.000000
s ce10.chrX               431611 549 + 17718866  
s cb4.chrX              20991057 587 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274311 585 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5020821 559 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       82250 550 +   193288  
i caePb3.Scfld02_254    I 20 C 0
s caeJap4.Scaffold54       46933 595 +   258924  
i caeJap4.Scaffold54    I 23 I 96

a score=273.000000
s ce10.chrX               432160 1 + 17718866 A
s caeSp111.Scaffold629   5021380 1 - 33334924 A
i caeSp111.Scaffold629  C 0 I 22
s caePb3.Scfld02_254       82800 1 +   193288 a
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       47528 96 +   258924 I
e cb4.chrX              20991644 0 - 21540570 C
e caeRem4.Crem_Contig24   274896 0 -  1162296 C

a score=-971.000000
s ce10.chrX               432161 24 + 17718866 ATCATGATGA---------TGGTCATAAAATTG------
s cb4.chrX              20991644 33 - 21540570 ATGGTATTAGAAGAATAATTGATCATAAAATCG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274896 24 -  1162296 CCGATATTAA---------TGGTCATAAAATCA------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       82801 23 +   193288 ----------------aattaatgttggaactgaaagag
i caePb3.Scfld02_254    C 0 I 117
e caeJap4.Scaffold54       47528 96 +   258924 I
e caeSp111.Scaffold629   5021381 22 - 33334924 I

a score=-1054.000000
s ce10.chrX               432185 28 + 17718866 TGT--GTGTGTAT------AGGCATATGTGTG---CCCA
s cb4.chrX              20991677 26 - 21540570 TGTATGTGTGTAC------AATGATCGATGGG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274920 38 -  1162296 TCTA-ATGTGTACATCAATAATAATCGGTGTGCTTCATT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       82824 117 +   193288 I
e caeJap4.Scaffold54       47528 96 +   258924 I
e caeSp111.Scaffold629   5021381 22 - 33334924 I

a score=-477.000000
s ce10.chrX               432213 9 + 17718866 GGGATAGGG
s cb4.chrX              20991703 2 - 21540570 -------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274958 9 -  1162296 GTGCTAAAt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   5021403 9 - 33334924 GATATAGGG
i caeSp111.Scaffold629  I 22 C 0
e caePb3.Scfld02_254       82824 117 +   193288 I
e caeJap4.Scaffold54       47528 96 +   258924 I

a score=2211.000000
s ce10.chrX               432222 14 + 17718866 CTATAAAAATCGAA
s cb4.chrX              20991705 12 - 21540570 Ccataaaaatca--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274967 14 -  1162296 ccataaaaatcgaa
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   5021412  9 - 33334924 CGATAAAAC-----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54       47624 11 +   258924 CCATAAAACTA---
i caeJap4.Scaffold54    I 96 C 0
e caePb3.Scfld02_254       82824 117 +   193288 I

a score=-8879.000000
s ce10.chrX               432236 30 + 17718866 --------------TTCGGTC--CGTGAATGGTT---TGTG------------------CTTTCATT
s cb4.chrX              20991717 16 - 21540570 -------------------------tgaaacGCTTTTCATG--------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   5021421 21 - 33334924 ----------------------------AAGGTTCAATGTG------------------CATCAATA
i caeSp111.Scaffold629  C 0 I 5
s caeJap4.Scaffold54       47635 67 +   258924 TGTGGTTCTCTTCTCTCTGTCTTCTTTGTCGGTATTTTATGCCAGAGcacatacacatacatacatt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       82824 117 +   193288 I
e caeRem4.Crem_Contig24   274981  8 -  1162296 I

a score=-20362.000000
s ce10.chrX               432266  62 + 17718866 --------------------GGTCTCATAAAA-------ATTGCGTCGCAGG--------ACAAAGCGCTA--------------------------------AAGCTTTTGCGGTATTTGTGAGT--GCC
s cb4.chrX              20991733  66 - 21540570 --------------------GAACTCATAAAA-------TTTCTAAGGACG---GCGACCAAAACGCGGTA--------------------------------AATCTTTTGCAGTGTATGTACAATT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   274989  47 -  1162296 --------------------GGTTTTATGAAA----------------------------AGAAGGGGGCA-------------------------------CAAGCTTTTGCGGTATTTGTATGA-----
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold629   5021447  53 - 33334924 --------------------GGACCCATAAAC-------GGTTTAGCGCCGTGTGCGTTTGCAA---------------------------------------AGATTTCCGTAGAGCC------------
i caeSp111.Scaffold629  I 5 C 0
s caeJap4.Scaffold54       47702 125 +   258924 cttgtcatcacaccacatcacatcacacaGAACGATAGTAATCCGCAAACAACAGTTTTTATGATAAGCCATCAATGTATCCTGTTGGGTATGTCAGATAAGTATGAATTTGGTGGACTGGTACA------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       82824 117 +   193288 I

a score=-20045.000000
s ce10.chrX               432328 53 + 17718866 ATGTTTGATAGCAAACTAAATGCCAA------ATATCAATAGAATATGAAC--GATATAAA------------------
s cb4.chrX              20991799 48 - 21540570 GTGTATGCT-------TATGTGTCAATGTTTAGTACCGATACCAAAT------ATTAGCAA------------------
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig24   275036 23 -  1162296 --------------------TACCAA------------ATGCCATAT------ACCAACAA------------------
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold629   5021500 36 - 33334924 GTGTTTGTTA------TAAATATCAG------------------TAT-AGCTAGATACAAA------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       82941 40 +   193288 aagtttgaca------aaaaaaagaa------------acatgttaT-AAC--ACTAACAA------------------
i caePb3.Scfld02_254    I 117 C 0
s caeJap4.Scaffold54       47827 67 +   258924 AGGTTTTATG------CAAATGTGTG--ATTGGTTGGCTTTCCATAT--TC--ACTAGTACATGATTCAGCTCTATATG
i caeJap4.Scaffold54    C 0 C 0

a score=-6164.000000
s ce10.chrX               432381 44 + 17718866 G---AAATGAAGGAAGCGACAATAATCCGCAAACAGATAGGATAAGT---------
s caeRem4.Crem_Contig24   275076 42 -  1162296 ACAAAGGAGAAATAA-CGACAGTGATCCGCAAAC----ATGATAACT---------
i caeRem4.Crem_Contig24 I 17 I 107
s caeSp111.Scaffold629   5021536 36 - 33334924 ----AGGTGG---AAGCGACCGTAATCCGCAAAC----ATGATAAGT---------
i caeSp111.Scaffold629  C 0 I 71
s caePb3.Scfld02_254       82981 36 +   193288 ----AGATGGATTATGTGA--ATAATTGAC-TAC----GTCGAAGAT---------
i caePb3.Scfld02_254    C 0 I 33
s caeJap4.Scaffold54       47894 40 +   258924 ------------TGTATGaaaagaattttaaaat----acAACTAATCGAAGAGGT
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              20991847 61 - 21540570 I

a score=-32733.000000
s ce10.chrX               432425 72 + 17718866 CATACGGGGA-----TCTAGGTAAATAATTTTGT-----TGGTCCCCGGACCCTC----------CCGCTC-------CTTTGA----------CTTTTGATGACTAGA
s cb4.chrX              20991908 35 - 21540570 ----CAGAAA-----------------------------TTGTTTTGAT----TC--------AGAggttt-------aattga----------------------aaa
i cb4.chrX              I 61 I 1
s caeRem4.Crem_Contig24   275225 70 -  1162296 TATCTAGAAA-----TTCTA-----Tactataac-----tttttcagat--tctc--------aaatGTTT---TCGAAATTGA----------CTTCTGATG-TCAAA
i caeRem4.Crem_Contig24 I 107 I 21
s caeSp111.Scaffold629   5021643 85 - 33334924 tttttagaaaaacattCTTA--AAATAGATCTGCCAAGATCGTATCTACCCTTTcctaaaaaagtttctttccctagaatttca----------------------aaa
i caeSp111.Scaffold629  I 71 I 56
s caePb3.Scfld02_254       83050 63 +   193288 -----agaaaaaagtttttgttcgatACTTCTAC-----TCGCTTTCATgctttt--------atttgttt-------atttga---------------------taaa
i caePb3.Scfld02_254    I 33 I 31
s caeJap4.Scaffold54       47934 83 +   258924 TATATGTATA-----TGTATATGTACATAATTGCC----TAAAATCCAATCCCCC----------CTGCTC-------TGTGGAGAGACCATCGCGATTGTGAGCGAAA
i caeJap4.Scaffold54    C 0 C 0

a score=-4252.000000
s ce10.chrX               432497 13 + 17718866 AATGCGCCCCAAA--------------
s cb4.chrX              20991944 13 - 21540570 agcgTACACTAAA--------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   5021784 13 - 33334924 TTTGACGCCTAGA--------------
i caeSp111.Scaffold629  I 56 I 1
s caePb3.Scfld02_254       83144 13 +   193288 tttttcttctgaa--------------
i caePb3.Scfld02_254    I 31 I 7
s caeJap4.Scaffold54       48017 27 +   258924 AATATGTGCTGGTGGGGGCGAAGGCAA
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   275295 21 -  1162296 I

a score=67020.000000
s ce10.chrX               432510 488 + 17718866  
s cb4.chrX              20991957 476 - 21540570  
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig24   275316 522 -  1162296  
i caeRem4.Crem_Contig24 I 21 I 19
s caeSp111.Scaffold629   5021798 448 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254       83164 474 +   193288  
i caePb3.Scfld02_254    I 7 I 106
s caeJap4.Scaffold54       48044 393 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=-29821.000000
s ce10.chrX               432998  96 + 17718866 GGACAA-------------CAAATGCAAAA---TATTTTT-----TTAA----AAAACCCTATGCAAT------------------------TCCC---------TTCGTTTT----------------------CTTTCCGATTTCC-CTTTCACATGATTGCATAATCTTTGGGA
s cb4.chrX              20992468 118 - 21540570 ---------------------------------CATTGTT-----TTCAGCTACGGTGGCTGGAAAAT---------AGTCgttatttccaatttt---------ctcccCTC--TAGTTTTCTCCTCCGTCAGTTCTTacgattttc-ttttcacctGATTGCATAATCTTTGAGA
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig24   275857  96 -  1162296 ---------------------------------tatctat-----ttcaac--agttttccatgaaga---------agacgtt-ttcccattttc---------ctcATCCC----------------------TCTTACGAATTTCACTTTCACCTGATTGCATAATCTTTTAGA
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold629   5022246  82 - 33334924 --ACAA-------------AAATCACATAA-TTGAACGTTACCCCTCCCGC--CGCTTCCTAAGACAT-------------------------------------TTCAC----------------------------------------TTTCGCCTGATTGCATAATCTCAGAGA
i caeSp111.Scaffold629  C 0 N 0
s caePb3.Scfld02_254       83744 169 +   193288 GAACAATAAAATTGTTCCTAAAGTACACAAGCTGATTTTTATCGCATCAAT--TAAAAACCAAGATATGAGGCTCCAAACAGGTGGCACCAACTTTATTAGAGTATTCACTTC---ATCtcatattttgaataatttttccta--TCC-TTTTTCTCTGATTGCATAATCTTTTAGA
i caePb3.Scfld02_254    I 106 C 0
s caeJap4.Scaffold54       48437  81 +   258924 ---------------------------------------------------------------------------------------ATCTTTTCC---------CTCactcaagtttttttttcttttttcaaatttgccaTTCCTCTCCTTTCACCGATGACATAATCTTTAGGA
i caeJap4.Scaffold54    C 0 C 0

a score=52112.000000
s ce10.chrX               433094 296 + 17718866 ---AAGTAG---ATACCAAGG---AGGCAAAGC--CGCCGAG-AAAAGAACAGGT-------TCGACAGTCTGTTTCACTTTCTACTAAGGTGGAAG------AAAACG--TGAAAGTGAGAAAATGGGAGGAGGGCGCTGAAATCGCAGAAATACCGTTGATCTGGCAAGAGGCGC-------AGAACAAAACACATGAGTGGG------------------TAGG--GTCGTCTTAGCC---AAAAAAAA----------GTGGGTGATCTCGGGGTAGGAGGAAGATGTATATCTT-------------CTTACAGCATAGCGAAG-----------TTGCGCAACCACGTTATGCTTCAATGAGATTGAATTGAAACTGAAAG------
s cb4.chrX              20992586 263 - 21540570 ---AAGTAG---ATACCAAAGAGAAGGCAAAGC--CGCCGAG-AAAAGAACAGGT-------TCGTCGGTCTGTTTCACTTTCTTCTAAGGTGGGAGTAGGAGAAAACG--TGAAagtgagaaaatg-------------gaaatagTGAGGAAGTAg----------aagagtttc-------agaa-aaaacacaTGAG-----------------------GGGAAGACGTTTTagttcaagaaaaaaa----------gtgggTGATCTC------GGCCGAAGATCTATATCTCCTTC-TACAACCTCTTACA-----GCATAG-----------TTGCGCAAC-------------------ACTGAAACGAAACTGAGAG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   275953 255 -  1162296 ---AAGTAG---ATACCATGG-------AAAGCCGCGCCGAG-AAAAGAACAGGT-------TCGACCGTCTGTTTCACTTTCGACTaaggtggaagaagga-aaaacg--tgaaagtgagaaaaagaaa----------gagagagtgtggaaggcg----------aagagTTTC-------AGAACAAAACACATGAG-----------------------AGG--GTCGTATTAGCC-----GAAAAA----------ATAGGTGATCTC------GGCCGAAGATCTCTATCTCCTCCATACAACCTCTTACAGCATCGCATAG-----------TTGCGCAA------------------------GAATGAAACTGAAAG------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       83913 245 +   193288 ---AAGTAGAAAATACCAAGG------CAAAGC--CGCCGAGAAAAAGAACAGGTTTGCCAATCATCCTTCAGTTTCACTTTC-------gtagaagaaaacgaagacgcatgaaagtgagaaaatgtCATGG-------AAAATAGTACAAGAAGCG----------AAGAGTAAC-------AGAACAGTTCATC-----------------------------G--GGCTTCTAAGCC------AAAAA----------GTGTGTGATCTC------GATCGGAAATCTTCATCCT-----TATA----TTTACA-----GCA--------------TTGCGCAAC-------------------ACATAAATGAAAGTAAAAG------
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       48518 298 +   258924 AGTAGATAG---ATACCAAGG---AGGCAAAGC--CGCCGAG-AAAAGAACAGGT-------TCGATCATCTGTTTCACTTTCTACaaaggtgatgg-------aaacg--taaaagtagaaaaagggaggaggag----gagggagaaagggaaaag----------aaaggaTGCGCGCAGTAGAAAACAACGTatggaaaggaaaggaaagagGTTGAGAGAGG--GTCGTGGCGGCA------AAAAATGATTTAGACACACGGGATCTC-------GCTGAAGAT----------------------CTTACA-----GCATAGATACGATGCTATTGCGCAAT--------------GTAATGCTTCAGTGAAAGCGAAAGCGTAAG
i caeJap4.Scaffold54    C 0 I 168

a score=-23632.000000
s ce10.chrX               433390 222 + 17718866 TAGTTGTCAAGAAAAG---GAGATCCCACTCAATAC------TCAATTAC------TTACTCG---------------------------------CCTAGAGTAGGGTAAATC-----------------TGTC------AATCACAAGATAGATCTGTTATCCGTTTTTG-GCGAAT------GAAAAAAAGGAACAAAAATGAAAGAAAAGAAGATAAGGAATGTGTACTACTAATACCAAAATAGTTTAGCTAGTCACGAGGTCTATGGCAATTTTCAAAATGTTTTC----------TCAACTAA
s cb4.chrX              20992849 236 - 21540570 TGAATGTCAAGAGAAAAATGGGG--------GATTTATGGTTCCTAATGCGGTA--CCAATCTTAGAACAAAAGACGGTTGCAGAATCAATAAGAATTAGTATTA--CTCACTTaactttttgtgttgaaaTTTAGGTGGAAATCACA----AGATCTTTTATCCG--TTTG-TCAAAT---------GAAACGTGATAGA--------ATTGAAACGATAGTATTCT--------------------ATTCTGTGATACTCAAATACTA---------CCGATCTGTTTTC---------TTTTACTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   276208 246 -  1162296 TGAATGTCAAGAGGAGAAAGagatttcttttgattt-tgatttctaaTGCGGTAAGTTAACCT-----------------------CCAATCACCTCCCAAATCGATATCAATT-ACTCACTGTCTTCCTATTTA-----AAATCACAAGATAGATCTCTTATCCG--TTTG-TCAAATCAACTACCAAAAACGGaacaaaaat---agatgaaaagaagagaattccG-------------------ATTTTACTATTTACTACGACTA---------CTACTATAGTGTCATTGATTGATTTGACTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       84158 182 +   193288 TTtataacacaaaaaa-------------ttgaatc-----ttcaGCTGTGTTTGGTTGATTT--------------------------------------ACCAGAACCAAGG-----------------TTTC-----AAACCAAA----AGGCTTAAAAACTT--TATGTTCAAAT----TTGTGAATACAAAATTAGGATT-CGGGTTTTaatgataaaaat----------------------gttttgtgatGGGAATAAATGA---------CCAAAACTAGAAC--------AATTCACTCA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       48816 168 +   258924 I

a score=95729.000000
s ce10.chrX               433612 283 + 17718866 CCTCGAGCACTTGTCGACATGCTCGAATGTCCAAGAGCTGCTAGTACAGTTTCGACGAGTTGATTTAATGTAGTGGTCCCTGCGACAATTGCATAAGTGTCTGTGATCATGTGTCCTTCGTTTGAGCATGTCAAGCAATGTTGAGAGCGAACTGTTTCCACGATTACCCTCATTGGGAACATAT--CTAGCTGAATGAAACtttatatttga--------aatttttaaaa---------------------taaaaatGAG---------AAATCGAGAT---AAACTAA----------------------------TAGCAGAAGAATCGA------AAGAAGAGCCAGAAGATAGT-
s cb4.chrX              20993085 343 - 21540570 CCTCGTGCACTGGTAGACATGCTCGAATGGCCTAAAGCTGCTAAAACTGTATCGACAAGCTGGCTTAATGTGGTTGTCCCGGCAACAATCGCATATGTATCAGTTATCATGTGTCCTTCGTGTGAGCAACTTAGACAATGTTGTGAACGAACAGTTTCCACAATTACCCTCATTGGAAACatat--tttgctaaa-----------aattgaatttgttgaatttttgaaaacttgtgGAAATAGACAACGGTAAATAGTATAAAAATA--CAATGATgggagaaaactgaaaaagaaggaaaccaTTCAAacgaagaacaagaagaggaATAATTGTTCGAAAAGAA-GACAAGATAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   276454 283 -  1162296 CCTCGCGCACTGTTTGCCATGCTAGAATGACCAAGAGCTGCTAGAACAGTATCCACCAACTGATTGAGTGTCGTGGTGCCCGCAACAATGGCATAGGTGTCAGTGATCATGTGTCCTTCGTGAGAGCATGTTAAGCAGTGTTGAGAACGAACAGTTTCCACAATTACCCTCATTGGGAACATAT--Cgcgctgaa-----------atttca--------gatttataaAA---------------------TAAAGAATATGTTAGTAATCAATTGTG-----AAACTgtaaaag-----------------------tgagaaaaagagtga------GGAAAAAG-GATGAGATAGA-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       84340 260 +   193288 CCCCTTGCAGTGGTTGACATGCTAGAATGCCCGAGTGCTGCTAGTACTGTATCTACAAGTTGGTTCAATGTGGTAGTTCCAGCAACAATTGCATAGGTGTCGGTGATCATGTGTCCTTCATTTGAACATGTTAGACAGTGTTGAGAGCGAACCGTTTCCACAATAACCCTCATTGGAAACATAT--CTTgctgaa-----------aatcta--------attttgttcaa---------------------ttaacaa------------aaatcttg-----aa---------------------------------ttagATTTGGAGCAG------ACGAAATG-CAAAGGATTG--
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       48984 277 +   258924 cctcgAGCATTAGTTGACATACTGGAATGACCAAGAGCTGCCAAAACTGTGTCCACGAGCTGATTAAGAGTTGTGGTTCCAGCAACAATGGCATATGTATCAGAAACCATGTGTCCTTCATGAGAACACGTAAGGCAATGTTGGGAGCGCACTGTTTCCACAATTACCCTCATTGGGAACATATTACTTGTAGAA-----------ATTAAA--------GAATACTGAAA---------------------GAAACAAA-----------Caattatatt---aattttt----------------------------tgggacGCGTAAATATTTAAGAAAAGATG-CAGAATTTAG-C
i caeJap4.Scaffold54    I 168 I 31

a score=1600.000000
s ce10.chrX               433895 49 + 17718866 TGGATAGATTTAGCTC---------TGCGCTCCGATTGGTGTGCGGACTTCCCGCCCA
s cb4.chrX              20993428 51 - 21540570 -----GATCCGGGCTCTCTCACTCCTCTCCCCCAATCGGTTC--GGAGTTCCCGCCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   276737 50 -  1162296 TGAAAGGATCGGGCTCTCT------TGTTCTCCCATTGGTCT--GGACTTCCCGCCCC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       84600 38 +   193288 -----GAAGC-------CT------CCGGTGGCTATTGGTTT--GGAAGTCCCCGCCT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       49261 31 +   258924 I

a score=53143.000000
s ce10.chrX               433944 681 + 17718866  
s cb4.chrX              20993479 771 - 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24   276787 774 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 479
s caePb3.Scfld02_254       84638 636 +   193288  
i caePb3.Scfld02_254    C 0 I 6
s caeJap4.Scaffold54       49292 726 +   258924  
i caeJap4.Scaffold54    I 31 C 0

a score=80183.000000
s ce10.chrX               434625 204 + 17718866 ACGATCATGTACTACTAGTTCGAGAAAAGCCTCGGGTCGTTGTGGTATGGCATCG-TCTTAGTCTTCGTCGTTGAGGGAGGAAAAAAGAA------GAATCGAACAAAGACAATCCACTTGTTCAAGATTTT----CTCTCTCTCTTCACTC-------------TTCTACCCTATAACCCCGCCTTT------CTCTTTTCCTCACCGTCA----AATCGAAAATAACGACGCTAC-A
s cb4.chrX              20994283 225 - 21540570 ATGATCATGTACTACTAGTTCGAGAAAAGCCTCGGGTCGTTGTGGTGTGGCATCGTttgaag-----------gaaaagaagaggaagaagaag--gaatcgAACAAAGACAATCCACTTGTTCAAGATTTTCCTCCTCTATACCAT-CTTCGCCCTCAGACGTATTCTGCCCTATAACCCCGCCTTTTTGTCATTTCCTCACTCACCGTCGTCATCGTAGAAAATAACGATGCTACAA
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24   278040 224 -  1162296 acgatCATGTACTACTAGTTCGAGAAAAGCCTCGGGTCGTTGTGGTGTGGCATCG-ACGAAG---TCGTcgttgaggagaagaaggaaaagaagtaGAATCGAACAAAGACAATCCACTTGTTCAAGATTTTGGCCCCCCTTCTCCT-ACTCGTC----------TTTTGCCCTATAACCCCGCcttatttctcttcttttcctcaacGTCGTCATCGTTGAAAATAACGATGCTACAA
i caeRem4.Crem_Contig24 I 479 C 0
s caePb3.Scfld02_254       85280 209 +   193288 ACGATCATGCACTACTAGTTCGAGAAAAGCTTTGGGTCGTTGTGGTGTGGCA--G-ACAACG---TCGCCTCTgagaaaaagtagagaaa------gaATCGAACAAAGACAATCCACTTGTTCAAgatttt----ctctctcactt-ACTCGTCTTCTT-----TTCTGCCCTATAACCCCGCCTT-------TAATTTCCCTCACCGTCGTCATCGTTGAGAATAACGATGCTAC-A
i caePb3.Scfld02_254    I 6 C 0
s caeJap4.Scaffold54       50018 148 +   258924 GCGATCATG---TACTAGTTCGAGAAAAGCCTT--GTCGTTGTGGCG-------G-GTGGTG----------TG----------------------GCATCGAACAAAGACAATCCACTTGTTCAAGATTT-----CTCCTTCGCCC------------------TTT---------ACCCCGCCTTT------CTCCTCTTCT-------GCCTACGTCGCAAATAACGACGCTAC-A
i caeJap4.Scaffold54    C 0 I 568

a score=10310.000000
s ce10.chrX               434829 64 + 17718866 CAT----CGCATAAGG---GGCGCATC-----AGAATTAGAA-----TTGTCCCGAT-GTG-TCAGCAGAGATAAAGGTTAAG
s cb4.chrX              20994508 73 - 21540570 CAG----CGCATCAGAATTGGAAGACCG----GGAATTAAAAATCTTCTTTCTCGAT-GTG-TCAGCAGAGATAAAGGTTAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   278264 76 -  1162296 CAGGCATCGCATAAGA---GGAGGGGCGCATCAGAATTAAGA----TGCCTCTCGATAGTGTTTGGCAGAGATAGAGATAAAG
i caeRem4.Crem_Contig24 C 0 I 618
s caePb3.Scfld02_254       85489 64 +   193288 CAT----TGCATATAG---GGCGAAAC-----AGAATTAGAA-----TTCTCTAGAT-GTG-TCagcagaaataaaatttggg
i caePb3.Scfld02_254    C 0 I 8
e caeJap4.Scaffold54       50166 568 +   258924 I

a score=-171.000000
s ce10.chrX               434893 34 + 17718866 -TTACTTATAGAAATTTTAAGG----ATGCGCGTTTCGG
s cb4.chrX              20994581 33 - 21540570 GTTACAGATGATGACAGTCGTT------GGTTGTTACAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254       85561 38 +   193288 -TTGCAGATAATAATTTTCATGGAGAAAGAGCACTTCAG
i caePb3.Scfld02_254    I 8 I 10780
e caeJap4.Scaffold54       50166 568 +   258924 I
e caeRem4.Crem_Contig24   278340 618 -  1162296 I

a score=800.000000
s ce10.chrX               434927 143 + 17718866 GA---GAGGAGGGGGTCTGCCAGTTATAGATAAGACAGTGGTTGGAATGCAAGTCACTATTTACTTAGGAGCTCCGAGTGGGTTTGGGATTATTGTCGATAAGATAATGTGTACACTTTTGATACTTCGCCACACCAAAACTCAAA
s cb4.chrX              20994614 126 - 21540570 AAAATGGGGTGGGTGTTTCCC---CAACGATAAGATAG----CAAAATGCTGTTTCATGTTTGTTCTGGAGCTCTAAG-ACCTCTAGGATAA-----GATACTCTGATGTGTACCTgttctgaactt-------tcaaaacttcag
i cb4.chrX              C 0 I 174
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50166 568 +   258924 I
e caeRem4.Crem_Contig24   278340 618 -  1162296 I

a score=0.000000
s ce10.chrX               435070 52 + 17718866 TCCGTTTCTAGAAATTTATCTAACAAGGTTTATTGTTAAAATTACTATGAGT
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50166 568 +   258924 I
e cb4.chrX              20994740 174 - 21540570 I
e caeRem4.Crem_Contig24   278340 618 -  1162296 I

a score=637.000000
s ce10.chrX               435122 112 + 17718866 CAAAAATCAACAA-----------TTGGTATAA---AACGTGGTTTTGGAAATATCTAATTTTTCAGAATTTTTGCAAAACTCTGTGAGACTCATTGATTAATCATTGTATTCTACACTTGTATTA
s caeRem4.Crem_Contig24   278958 112 -  1162296 CAAAAACCAATGAATGAAGAGCTGTTGGGATAAGATAATGAGATTTGAGAAATGTCTTCTGTCATAACATAATTGATCTATTCTACAAGA----TTGTTTGGTCCTTGT----------CATAGAA
i caeRem4.Crem_Contig24 I 618 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50166 568 +   258924 I
e cb4.chrX              20994740 174 - 21540570 I

a score=9771.000000
s ce10.chrX               435234 261 + 17718866 TCTTGCTCCATCTCCA---------CATAATCAGTTCTAACAA------ACGAATGTTTGTGCCCCTAAGCCTA-GAGGATTTAGTTTAGG----------TGTCATCGTAGCGGCTAATTGAAACAATTG-----CAATCTG-----------------GAGCAATACTGAA------------GCAAGGAGAGGG-----GGTTCGAATAAGCCGG--AAAGAGTAATCCCGGTT--GCTTGAAGACACCAACCCCGCGGATGGGATTATAC-AAGAAGCATGAAGTAGAAGTATAGGGTAAAT----GAGACCCTTCTT-------------------------------------------------------ACAAATTTGAAAG
s cb4.chrX              20994914 283 - 21540570 TCCTTCCCCATCATCA-------TCAATTATTCGCTTTAACAA-GAATCATGGATG-----ATTCTTAAGCCATCTAGGATTTAGTTTAGG----------TGTCGC----GTGGCTAATTGAAACAATAGCACAACAATCTGGGCACGGCGATGGGGGCGAGCAATACTGAGGGTGGTGTG---GTAAAGTGAGGG------------GTAAGCTGGCAGCCGAGTAATCCCAGTT--ACTCAAAGACACCA------CGGATGGGATTAGACTGATGTGGACGAAGTATATGGTTGGGGTTGC-----GACAACCATCTT----------------------------------------------------TTCACAAGTCATAAAG
i cb4.chrX              I 174 I 295
s caeRem4.Crem_Contig24   279070 352 -  1162296 ---TCCCCCTTCATCACAATTTCTCAACCATCCAATGTTCCAAGGAATCAC-----------CCCTTAAGCCAT-TGGGATTTAGTTTAGGTGTCATCGTTTGTCGC----GCAGCTAATTGAAACAATAG-----CAATCTGG--AGGAAGATG-----GAGCAATACTGCCCGCGTTTTGTATGTGAAACGATGGAGAGGAATTAGAAGAAGCTGGGCAAGGAGTAATCCCAGTTTGCTTGAAAGACACCA------CGGATGGGATTAAACTgatgtggaagaagaagaagaagtgtgGTGCTGGTAGACAACCGCTCTAAGTCATCTGTGTCTTTGTTACAAATATAGATGGGTCTAAGAAGGATAGATGTGCATGAATTATAAG-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50166 568 +   258924 I

a score=-2692.000000
s ce10.chrX               435495  75 + 17718866 TCGAGAAGTTCTAGACTTCAAGGGGCAATGCA------------------------------AAAAATCTCAG------TTT---------------------------------------------------TACATAT--------ATTACGTATCGTACGGTAACGC
s caeRem4.Crem_Contig24   279422 169 -  1162296 ATAAGGGAATATTGAGAGAATAGGGCAATGCATCTATAGGCTTGTTTGCTATTATAACTAAAAAATATGTCAAGGATTTTTTCTGTAACTACACCAACCCCATTGATCTACCCGAATAATAGAATCATGTAAATACATATTCGATTGAATCAAATTCAATACAATA-CAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50166 568 +   258924 I
e cb4.chrX              20995197 295 - 21540570 I

a score=546.000000
s ce10.chrX               435570 2 + 17718866 AA
s caeRem4.Crem_Contig24   279591 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 34
s caeJap4.Scaffold54       50734 2 +   258924 AA
i caeJap4.Scaffold54    I 568 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e cb4.chrX              20995197 295 - 21540570 I

a score=24366.000000
s ce10.chrX               435572 100 + 17718866 AAGAGAAGATTAAAGAGGAGGGGGGGGGGGGGGAAGTCAATTGAAATTCAGCGGCCTTATCATACGATATA------CATTATATGTTTACCAACTCAATGGACCG
s cb4.chrX              20995492  99 - 21540570 aaaaggaGATTAAAGGCAAACTCGAGT-------AGTCAATTGAAATTCAGCAGCCTTATCATCAGGCATGAACTATCTCTATATGTTTACTGATTCAATGAGCCA
i cb4.chrX              I 295 C 0
s caeRem4.Crem_Contig24   279627  90 -  1162296 AAAAGGAGATTAAAGGGAGAATTTG---------AGTCAATTGAAATTCAGCGGCCTTATCATC-GATATA------CACTATATGTTTACCAATTCAATGAACCG
i caeRem4.Crem_Contig24 I 34 C 0
s caeJap4.Scaffold54       50736  83 +   258924 AAGAGAAGATTAAAAGGAGGAG------------AATC-ATTGAAATTCAGCGGCCTTATT----GATATG------TATTTAATGTTTACCAAATCAATGGGCCG
i caeJap4.Scaffold54    C 0 I 1803
e caePb3.Scfld02_254       85599 10780 +   193288 I

a score=-680.000000
s ce10.chrX               435672 20 + 17718866 GAC---CGAATGGAGAAAGAGAT------
s cb4.chrX              20995591 23 - 21540570 AATCATTGTTTGAAGAAACAAAT------
i cb4.chrX              C 0 I 2070
s caeRem4.Crem_Contig24   279717 20 -  1162296 AAT---------AAGAAAGGAATAGAGAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I

a score=485.000000
s ce10.chrX               435692 33 + 17718866 GGTAGGGAATGGAATAATGTGATGGGTTATGGT
s caeRem4.Crem_Contig24   279737 23 -  1162296 G--------TGGATCAA--TAATGGGTCATGGT
i caeRem4.Crem_Contig24 C 0 I 769
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I
e cb4.chrX              20995614 2070 - 21540570 I

a score=0.000000
s ce10.chrX               435725 941 + 17718866  
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I
e cb4.chrX              20995614 2070 - 21540570 I
e caeRem4.Crem_Contig24   279760 769 -  1162296 I

a score=6196.000000
s ce10.chrX               436666 696 + 17718866  
s caeRem4.Crem_Contig24   280529 743 -  1162296  
i caeRem4.Crem_Contig24 I 769 I 1466
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I
e cb4.chrX              20995614 2070 - 21540570 I

a score=0.000000
s ce10.chrX               437362 3072 + 17718866  
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I
e cb4.chrX              20995614 2070 - 21540570 I
e caeRem4.Crem_Contig24   281272 1466 -  1162296 I

a score=862.000000
s ce10.chrX               440434 75 + 17718866 CATGATCCCCCAATTCCCAGCA-TTCAATATTCCCAATAATAAAAACGTTTTTGGCTGCTGTTATCTGTGTGATAT
s caeRem4.Crem_Contig24   282738 63 -  1162296 CATGGCCCTGTGATTCCCACCAGCTCTGTATCT-----------AACATTTT--GTTTCTATTCTTTTACTGATAT
i caeRem4.Crem_Contig24 I 1466 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I
e cb4.chrX              20995614 2070 - 21540570 I

a score=3503.000000
s ce10.chrX               440509 167 + 17718866 TCCCAACATGGAGAAAGACACACATATAT----------GTACTTGCATAC--------------ACATTCAAATGACACGACTTTATTATCG-GCCAACGCATTTTTGGGTG--ACGGGGGGATGGAAGGAGTGTAAGAAGACTATATTAGCTCTCTCCGAAGCAAAGGGAAAGAGCACAAGAGAAAGAGAGT
s cb4.chrX              20997684 152 - 21540570 -TCCAGAGACG-GCCATACACACATGCATAGATAGCTGTATACTCAAATAC-------------CATGTAC-AATGACAAGACTTTATTATCG-GTCGACCGAGTTTTGGGTGACACGGATGGG------------GGTAAGACTATATTAGCTATC------------GAGAGTAGAAGACGAGAATGACTA-
i cb4.chrX              I 2070 C 0
s caeRem4.Crem_Contig24   282801 144 -  1162296 TCCCAAAG------CGCACAAACATGCATCCAACAC---ATACTCAAACACGCTCACAAATACATACGTACAAATGACACGACTGTTTTATCGCGGCGACA-----TTGGAAG--ACGGATGGG-----------TAAGAAGACTATATTAGCCAT----------------------GGGAGAGCAGGACTA-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       50819 1803 +   258924 I

a score=6965.000000
s ce10.chrX               440676 307 + 17718866 GAGCACAATCCCGA-------------------------GACTC------------TGATAAACAACTGATAA-----CAGTTTGGGAACAGGATTGGAATCTCTCGTGATTTGG-----------GAAACATATTCA--TACGTAAGCAGTTTCCGTTTTACA---GTACAGGGATGG-----AAAAACGTGATAAAACCAAAAGGTT------GAACAATTTCGACAT-----------------TTAGGAGATCTGTGAAGAAAAGACAAAAGGGCATAGAGAAGAAAGGGGGGGCGAGAAGCACAAAAAAGGGACGGGAACGGAATATGAAATCGC-----TACATAAA-ATATGGA--------------------------------TGCTATATTTTATCTGTTTGTTCAAAAC--CAAGAACTGA
s cb4.chrX              20997836 324 - 21540570 GAGCACAATCCCGGGGCAAATGGAAAGTTTGTGACG---TGCTC------------TGATAAACAACTGATAA-----CAGTTTT------GGATT-GAA--TCTTGTGATTTGG--------CGAGCAATTCCTACA--TACGCCAACAATTT-CGCTCGGTA---AGAATGAGAGCGTCTataagaaaaaggaaacaaaaaaaggta-TCGCAGAAAGATTTCGAAAC-------------CCACTGTACTGTTCCAgtgataaacaaaaaaagaaagt---agaaaatgggaaatcgAGAGAGTATAAAGAAGATGAAG------------CTTCGC-----TGCATGAATATATGGA--------------------------------tgcaatattttatctgtttgCTTGAAACTGCTGATGctaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   282945 350 -  1162296 GAGCACAATCC-------AGCGGACAGTTTCTGACGCTCTGCTC--------TCGGTGATAAACAACTGATAACGAATCGGTTTT------GGATTGGAA--TCTTGTGATTTGGGTAACAAACGATAAATACCTATACCTACGCAAGCAATTTCCGCTCGATACATAGGAAGTGAGGG-----AATGAAAGGATGAGAATGAATAATACTtgcagaaa-atttcgaaactgttTCCACGAAGCTTCTTTGTTGCTTTTTGAGTAGATACGGAGAGATagttgaagaaaaagacaaaagcAGAAAGTGAGGAGAGGTATA----------------TCGC-----TGCATAAA-AGATGGA--------------------------------TGCGATATTTTATctgtttgtttcaaaaatcgagaaccga
i caeRem4.Crem_Contig24 C 0 I 1605
s caeJap4.Scaffold54       52622 327 +   258924 GAGCACAATCC----------------------------TGCTCGTAACGACTCGGCGATAAACAACTGATAACGAATCGATGT-------GGATTCAAA--CAGTGTGATTTGTAAGGCAGGCA-CACACATCGATA--TGTACAAGCAA-----GATTGAAA---ATAGTTGGGGA------ACTTATAAAATGATTGTGAAATATA----CAGAAT-ATACGATAAA-----------------AGTGTTGCTTTTGAGATAGATATACAgaggaaat---aaagaaaagaaaaaaaaaacatatcagAAATC------------------ATTCGTAAAGATGCATAAA-ATTTTGAACTAGTGATGTGTTGTGTTGTGTTGGTTGGATTGCCATATTTTATCTGTTTGTTCAACAATCTG--------
i caeJap4.Scaffold54    I 1803 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I

a score=-67.000000
s ce10.chrX               440983 13 + 17718866 --ACAGAACAGATCG
s cb4.chrX              20998160 13 - 21540570 --aaagaaaagtttg
i cb4.chrX              C 0 I 3807
s caeJap4.Scaffold54       52949 10 +   258924 GGATAGAAAG-----
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeRem4.Crem_Contig24   283295 1605 -  1162296 I

a score=848.000000
s ce10.chrX               440996 12 + 17718866 AGATTTTTATAT
s caeJap4.Scaffold54       52959 12 +   258924 AAATTTTTACAT
i caeJap4.Scaffold54    C 0 I 1894
e caePb3.Scfld02_254       85599 10780 +   193288 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeRem4.Crem_Contig24   283295 1605 -  1162296 I

a score=0.000000
s ce10.chrX               441008 5036 + 17718866  
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeRem4.Crem_Contig24   283295 1605 -  1162296 I

a score=3335.000000
s ce10.chrX               446044 88 + 17718866 CTACATTGTCTTTGT------CCGTTCGAGATGACATAG-TTTTGTTGGTTTTTGCATGTCTCACACCTAGATCAAGAC-TTTTTGTAACATTTTG
s caeRem4.Crem_Contig24   284900 95 -  1162296 CTACTTTGTCTTCTTGCCGAACCGAATAGGACGAGACAGCTTTTGTTGGTTTT-GAATGTCTCATACCCAGATCGGGACGTCTTTGTAATATTGTG
i caeRem4.Crem_Contig24 I 1605 I 4457
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I

a score=0.000000
s ce10.chrX               446132 2602 + 17718866  
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeRem4.Crem_Contig24   284995 4457 -  1162296 I

a score=4385.000000
s ce10.chrX               448734 206 + 17718866 ACATCGTAATCCTCATTTGAAAC--------AGACGCATATTCGAT-----ATGATTTTCATTTTCT--ATGGAAAACAA-TGATTTTCCCGAAAACCTGTCTTCTTCATTTTGCCTCATCTTCAAAAAACTGCCAATCTTTTTGAACATTGTCTTCTTTTTCGGCATTTTTCCAGAATTCGTCATTTTGTTCTCTAATGTTCCGTATATTGGTTTCTGGAA
s caeSp111.Scaffold630   5473872 210 + 20921866 ataccgtaatccgtgGTTGAACCTTCGCCAAGAACTGATTTTCTATCATAAatatctttcttcttctggaaaaaaaacaactgacTCTATCCAAAA---------TTCATCCAATCTAACCTTGAAAAGTCCACGAATAGTtttgaacacatttttcttcttcgggGATT---CCGAATTGGTCATTTCGTTCTTGAGCTCTTCGTAGCTTGGCTCCTGAAA
i caeSp111.Scaffold630  N 0 I 7911
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeRem4.Crem_Contig24   284995 4457 -  1162296 I

a score=0.000000
s ce10.chrX               448940 1452 + 17718866  
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeSp111.Scaffold630   5474082 7911 + 20921866 I
e caeRem4.Crem_Contig24   284995 4457 -  1162296 I

a score=272.000000
s ce10.chrX               450392 53 + 17718866 TTTTCAGTATTTTTCCAATTTCGTGTTCCCAAAT---------GCATTAATGTGGTAGTGCG
s caeRem4.Crem_Contig24   289452 60 -  1162296 tttttgtttttttttc--ttttgtgttttgaattttgaaagtagAAATGGTAAAATAATAGG
i caeRem4.Crem_Contig24 I 4457 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I
e caeSp111.Scaffold630   5474082 7911 + 20921866 I

a score=4000.000000
s ce10.chrX               450445 49 + 17718866 TAAAAATGATTTTTCATTA-TTTTTGAGCA---CTAAGCTCTAACAATCACAA
s caeRem4.Crem_Contig24   289512 46 -  1162296 --AAGAAGagattgttttattttttgagcaaacaTTTGCTCTAACAAT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5481993 47 + 20921866 tgaaaacgatgttttttta-tttttgagcaaGTCGGCGCTCTAACAAT-----
i caeSp111.Scaffold630  I 7911 C 0
e caePb3.Scfld02_254       85599 10780 +   193288 I
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I

a score=-798.000000
s ce10.chrX               450494 74 + 17718866 -ACGAAATAATATACATATTAGTGGGAAATGAGAGAAATGAGAGaaataaattaatttaaaatatGACAACC---TGA
s caeRem4.Crem_Contig24   289558 36 -  1162296 TATA-TATATTATACAGAATAT--------------------------------------GATATGACAACC---TGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5482040 30 + 20921866 -----AATATTATACAAAGT----------------------------------------GATGGAACaacc---tga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254       96379 35 +   193288 -ATAAAATATAATGCACAGT------------------------------------------TGTAACAAGTAAATGA
i caePb3.Scfld02_254    I 10780 C 0
e caeJap4.Scaffold54       52971 1894 +   258924 I
e cb4.chrX              20998173 3807 - 21540570 I

a score=-4450.000000
s ce10.chrX               450568 15 + 17718866 AAAT--------GAGAAAA-GGCA--
s caeRem4.Crem_Contig24   289594  6 -  1162296 AA------------------GGCG--
i caeRem4.Crem_Contig24 C 0 I 16
s caeSp111.Scaffold630   5482070 16 + 20921866 aaat--------gagaaaacggCG--
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_254       96414 24 +   193288 AAATAAGTTAAGGAACAAACGAtg--
i caePb3.Scfld02_254    C 0 I 25
s caeJap4.Scaffold54       54865 15 +   258924 -----------aaaaaaaaaaatgaa
i caeJap4.Scaffold54    I 1894 C 0
e cb4.chrX              20998173 3807 - 21540570 I

a score=24207.000000
s ce10.chrX               450583 128 + 17718866 --AAACATAAGAATACTAGT-CAAATAAATTAAGTATTGCAGACATCATCATGGA----------TT--TTTTTGTAGATAT-TTATGGCACACGGACGTAACGAGGCTTAGCAGTCGTTCGTTTTTCGATTAGACTCTGAAA-T-
s cb4.chrX              21001980 119 - 21540570 --aaataaataaatactCGA-ATAACAAATGAA------TTAATTACATCATGGT----------TTGATTGT----GAGGT-TTATGGCACGCGAACATAACGAGGCTTTGatgttgttcttttttctagtaAACTCTGAAA---
i cb4.chrX              I 3807 C 0
s caeRem4.Crem_Contig24   289616 122 -  1162296 --aaattaataaattaggaa-acaataaattaaaattt-ttgaaaaaatcatggt----------tt--tcag----aaaat-tcatgGCACACGGACATAACGTGGTTTTGCGGTTGTTCGTTTTTCTAGTAGACTCTGAAA---
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold630   5482096 119 + 20921866 --AAATTAGTGAGTGAGagggaaaataaattaatgaAT-TAGACAACATCATGGA----------TT--GT---------AT-TTATGGCACACGAACGTAGCGGGGCTTGGCGGTGGTTCGTTTCTCGAGAAGACTCTTaaac--
i caeSp111.Scaffold630  I 10 I 25
s caePb3.Scfld02_254       96463 121 +   193288 --aaataaataa--gaaaaatacatTAAATACATGATT-CATGAAATCTCATTGCActgatttgttt--tt---------at-tcatggAATTCGCA------GAGGTGTCGCAGTTGTTCGTTTTTCAAGAATGCTCTAAGAA--
i caePb3.Scfld02_254    I 25 I 3
s caeJap4.Scaffold54       54880 102 +   258924 caaaacaaggga------aa-taaataaataaa------ttaaaataatcatggt----------ac----------aaaataTCATGGCACACGGACATAACGCGGCTTAGCAGTTGTTCTT---------ACAATCTGAAA--T
i caeJap4.Scaffold54    C 0 C 0

a score=-9668.000000
s ce10.chrX               450711 31 + 17718866 ---TGGCTTATTGT-----GATTAA----AAATTGAAAAAAAT
s cb4.chrX              21002099 21 - 21540570 -------------------GATAAACTACAATGTG---TAGAT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24   289738 20 -  1162296 -------------------CATGAA----GATTtggaatagtt
i caeRem4.Crem_Contig24 C 0 I 9
s caePb3.Scfld02_254       96587 27 +   193288 ---TGGAACTGTGTCAGAACATAAG----AATCT---------
i caePb3.Scfld02_254    I 3 C 0
s caeJap4.Scaffold54       54982 36 +   258924 AATTAAATTCATTT-----TATAAG-tttagtttaaaaaaga-
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630   5482215 25 + 20921866 I

a score=118015.000000
s ce10.chrX               450742 239 + 17718866 GTTTGTAGCCTACCCTATGATCAATTGTTGGACCAGGAAGTACATGCCCACTGTAC---CGTTTTTTCGATGAACTCACTCTTCCGGAACTTCTTGTAGCGGCGGATGGTTGTGGGTTGGGTGGGGTCACACTTGCTGATTTGGTGGCTTGGTAAGTACGGATGGCATGGGCCTGATGGTGACCGGTTGCAGTTACAGTTGACTCATATATTCTAGGCTGGACACGGGCAGCGGGTTGG-GCA
s cb4.chrX              21002126 237 - 21540570 CCAAACAACTTACTCTATGATCAATTGTTGGTCCCGGAAGAACATGTCCACTGTAT---CGCTTCTTGGCTGCACTCACTCTTCCGGAACTTCTCGTAGCGGCTGCCGGTTGTGAGTTGGGCGGTGTAACGCTGACTGACTTGGTAGCTTGATATGTTCGTATAGCATGGGCTTGTCTATGTCCTGTGGCAGTTACTGTAGACTCGTAGATTCTAGGTTGAACACGCGCGGATGGCT---GTA
i cb4.chrX              I 6 I 2
s caeRem4.Crem_Contig24   289767 240 -  1162296 ATAGAAAGCTTACTCTATGATCAATGGTTGGTCCTGGGAGGACATGTCCACTGTAT---CGTTTTTTCGAAGAGCTAACTCTTCCAGAACTTCTTGTAGCAGCAGCTGGTTGTGGATTTGGAGGTGTCACGCTCGCTGATTTAGTGGCTTGGTAGGTTCGAATAGCGTGTGCCTGTCTATGGCCGGTAGCGGTGACAGTAGACTCATAAATTCTTGGTTGGACACGTTGTGGTGGTTGTGGTA
i caeRem4.Crem_Contig24 I 9 I 2
s caeSp111.Scaffold630   5482240 235 + 20921866 -gtttgcaCTTACCCTATGATCAATTGTTGGACCTGGAAGCACATGTCCACTATAA---CGCTTTTTTG---AACTCACTCTTCCGGAACTCCTCGTAGCAGCAGCTGGTTGTGGGTTTGGTGGAGTTACGCTAGCCGACTTCGTAGCTTGATAAGTGCGGATTGCATGAGCTTGTCGGTGACCGGAGGCGGTTACTGTTGACTCATAAATGCGAGGTTGGACCCTGGCGGAGGGTTGG-GTA
i caeSp111.Scaffold630  I 25 C 0
s caePb3.Scfld02_254       96614 236 +   193288 ---GTCAACTCACTCTGTGGTCAATCACGGGCCCTGGAAGAACATGGCCACTGTAT---CGCTTTTTCGAATAACTTTTCTTTCCCGAGTTTCTTGTTATTGGAGATAATTTTGAGGATGAAGGCGTCACAGTTGCTGTCTTTGCGGCTTGGTATGTTCGAATAGCATGTACCTGCCTGTGCCCAGTTGCCGTTACtgttgattcaaaaatacGCGGACGAACAGGTGATGGTGGTTGA-TCA
i caePb3.Scfld02_254    C 0 I 394
s caeJap4.Scaffold54       55018 204 +   258924 -----aaacaaacttTAAGATC---------TTCAGAAGCAACACGGCCCCCATTTGTGGTTTTCCTTGAAGAACTGATTGTTCCTGAACTCCTTGT--CAGATGTTGACCCT-------------------TTTCTGGCTCCGCCGTTTTAAAAGTGGGGATAGAATGAGCACGTCT---CCCTGAAGCGTTTACGGTCGACTCGTATATCCTTGGTCGGACATTAGCAGCTGGCTGC-GGG
i caeJap4.Scaffold54    C 0 C 0

a score=118.000000
s ce10.chrX               450981 2 + 17718866 TT
s caeSp111.Scaffold630   5482475 2 + 20921866 AT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       55222 2 +   258924 TT
i caeJap4.Scaffold54    C 0 I 82
e caePb3.Scfld02_254       96850 394 +   193288 I
e cb4.chrX              21002363 2 - 21540570 I
e caeRem4.Crem_Contig24   290007 2 -  1162296 I

a score=-1503.000000
s ce10.chrX               450983 3 + 17718866 TCT---
s cb4.chrX              21002365 5 - 21540570 -CGTAC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   290009 5 -  1162296 -CTGGC
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold630   5482477 3 + 20921866 TCT---
i caeSp111.Scaffold630  C 0 I 127
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeJap4.Scaffold54       55224 82 +   258924 I

a score=1447.000000
s ce10.chrX               450986 9 + 17718866 TTGTCTGAA
s cb4.chrX              21002370 9 - 21540570 GTTTCTGAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   290014 9 -  1162296 gtgtctaaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeJap4.Scaffold54       55224 82 +   258924 I
e caeSp111.Scaffold630   5482480 127 + 20921866 I

a score=660.000000
s ce10.chrX               450995 55 + 17718866 AA-AAAGTGATAAGCGGGCATTTTTTGGAAACACGCTGAAATTATTTTATTCTAGA
s caeRem4.Crem_Contig24   290023 51 -  1162296 aataaaataataa---aataatttttgagtgaatacTGAA--TATCTCACCCTTGA
i caeRem4.Crem_Contig24 C 0 I 10
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeJap4.Scaffold54       55224 82 +   258924 I
e cb4.chrX              21002379  1 - 21540570 I
e caeSp111.Scaffold630   5482480 127 + 20921866 I

a score=0.000000
s ce10.chrX               451050 565 + 17718866  
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeJap4.Scaffold54       55224  82 +   258924 I
e cb4.chrX              21002379   1 - 21540570 I
e caeSp111.Scaffold630   5482480 127 + 20921866 I
e caeRem4.Crem_Contig24   290074  10 -  1162296 I

a score=497.000000
s ce10.chrX               451615 52 + 17718866 CATGATCTATTATTATTATTAAAAAAAGATACCTCTGTGCTCCAGTTGCCAC
s cb4.chrX              21002380 40 - 21540570 CATAAATTATTAATGTCATTGCAAAAA-ACACT-----------GTTTTAAC
i cb4.chrX              I 1 C 0
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeJap4.Scaffold54       55224 82 +   258924 I
e caeSp111.Scaffold630   5482480 127 + 20921866 I
e caeRem4.Crem_Contig24   290074 10 -  1162296 I

a score=492.000000
s ce10.chrX               451667 6 + 17718866 TGATCT
s cb4.chrX              21002420 6 - 21540570 TCACCC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54       55306 6 +   258924 TGATTT
i caeJap4.Scaffold54    I 82 C 0
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeSp111.Scaffold630   5482480 127 + 20921866 I
e caeRem4.Crem_Contig24   290074 10 -  1162296 I

a score=-163.000000
s ce10.chrX               451673 5 + 17718866 AGTTG
s cb4.chrX              21002426 2 - 21540570 ---TT
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630   5482607 5 + 20921866 AGTTT
i caeSp111.Scaffold630  I 127 C 0
s caeJap4.Scaffold54       55312 5 +   258924 CGCCG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       96850 394 +   193288 I
e caeRem4.Crem_Contig24   290074 10 -  1162296 I

a score=590.000000
s ce10.chrX               451678 9 + 17718866 CAACAGTTC
s cb4.chrX              21002431 6 - 21540570 ---CTTCTG
i cb4.chrX              I 3 I 3
s caeSp111.Scaffold630   5482612 9 + 20921866 CCACTACTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254       97244 9 +   193288 CAAAAGCTG
i caePb3.Scfld02_254    I 394 C 0
s caeJap4.Scaffold54       55317 9 +   258924 GAACAGCTC
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   290074 10 -  1162296 I

a score=117750.000000
s ce10.chrX               451687 343 + 17718866 CCCTTGTTTGTGGCTGAGAGTAAGCTTGGTGCAAAGCTCGTTGTCTTCTCTGATACTCTGCTGGATC------GGTCGGACCGACAGACTGTGAGTTGAATGGTCCATTGAGTGGAAGATTCCCATTTGCAGCGATTCTTCTTGGAATAATCTGTTGCACAACTTGTTTGCCGTCTTGATAGTAATGAACAACTTGATTGGTATTTCC------GTTGGC---AGGCCTCTGAGGAGCAGTTGTGGCTTGGACACTTCCTTGCTGGAACACAACTTGTTGAG----------------------------CGGCGCTA----------GGTCGGTT-----TTGGGCCGGTTGTGGAGCTTGCTGGCGGGGAAGT------------TGTTGAGAGGGGATGTGTGG------TTGTTG
s cb4.chrX              21002440 361 - 21540570 TGCGAGTTTGTGGCTGCTGGTAGGCTTGTCGAAGTATTTCCTGCCGTTTCTCGTATTCAGCTGGGTC------AACAGCAGCAACGGAATGAGATTGGAATGGTCCACTCAGAGGTAGGTTTCCATTTGCAGCAATTACTTTAGGAATAATTTGTTGCACAATCTGTTGACCATCGTTGTAATAGTGCACAACTTGATGCACGTTTCCTTGTGGATACAC---TGGTCTTGGTGAAGCAGCGGTGGCTTGTGCATTTCCTTGTCGGTAGACAGCTTGTTGGGAAGGCGCAGG------------------TGGAGCAACTCTT-----TGTTGTAC-----AGGAGCTGGGGGTTG----TTTTGTCG-----GT------------TGTTGAGTGATGAAttgttgaatatactgttg
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   290084 379 -  1162296 CTCTAGTTTGTGGTTGATGGTAAGCCTGTTGAAGAGCTCGCTGTCTTCTCTGATACTCTGCTGGATCTGTTGGAGCAGGGGCAGCGGCTTGAGATTGGAATGGTCCATTTAATGGGAGGTTTCCATTAGCAGCGATTCTTTTTGGAATTATTTGTTGCACAATTTGTCTTCCATCATTGTAATAATGTACTACTTGATTGGTGTTAGGTGCTGGGTACACAGGTGGTCTCTGGGGAGCAGCTGTTGGTTGAGCATTTCCTTGTCTATAGACAACTTGTTGAGATGGTAGTGGGGCT--------------TGAGGTTTCTGTT---GGTGTTGAAC-----TGGTGCTGGGGGCTGAGAAGTTTGTAGGCGTTGT------------TGTTGGGCAGCATAttgggg------ctgttg
i caeRem4.Crem_Contig24 I 10 C 0
s caeSp111.Scaffold630   5482621 403 + 20921866 CTCTGGTTTGTGGTTGATGGTATGCTTGTTGAAGAGCTCGTTGTCTTCTCTGGTATTCAGCTGGATC------TGTCGATGCTCCGCCTTGAGACTGGAATGGTCCACTCAACGGAAGGTTTCCGTTAGCCGCTATTCTTTTCGGAATGATTTGCTGCacaatttgttttccatCGTTATAGTAATGCACCACTTGATTAGCATTTGGTTGTGGGTGAAC---AATTCTTTGTGGAGCTACAGTCGGCTGCGCACTTCCTTGTCTGTACACTGCTTGTTGGGATGCTGGCTTTTGTTGAACTGGTTGAACTGGAGCAGGAGCC-----TG-TGGACgttgttggtatt-gttgctggtattgttgaggttgtggtggaggttgcgggtgttgaacttgttgCTGGGGAACGTATTGTTG
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_254       97253 373 +   193288 CTCTTGTTTTAGGTTTGAAGAAGGATTGTTCAAGGGCATGCTGTACTTTCCGATATTCAACTGGATC------TATTTCGCTTTTGTACTGTGATTGGAATGGCCCACTCAATGGGAATGTTCCACTTGCTGCGATCCGTTTCGGAATTATTTGTTGCacaatttcttttccattgttGTAGTAGTGCACTATCTGGTTGGGGTTTGGTGGTGAGACTTT---ATTTTGTTGTGGATGAGCGGATCGTTCAACATTTCCCTGTCTACTGATTAGTTGCTTTGCACTTGGAGTTCGT----CTGCTTTG--TGAATCAACTGGT-----TG-TGATC-----TAGAAAT--TCGTTGGTATTCttgctgttgtggc------------tgttgctgttgttgttgtgg------ttgttg
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       55326 342 +   258924 TTTTATTTTGCGGTTGGTGATACGCTTGCTGAAGTGCTCGTTGTCTTCTCTGATACTCGGTCGGATC------CGTAAAACCGGTAGTACGCGACTGGAACGGTCCGTCCAATGGAAGGTTTCCAGTGGCTGCAACTTGTTTTGGAATGATCTGCTGAATCACTTGTTGGCCATTCTGGTAATAGTGCACAACTCGATTGGCATTAGCGTTTGATTGCAC------------TATAGGCCCAGGCTTTGCAAGATTTTGTTGTTGGTTTGCGATTTGATATGGTGGTGGTGGTCGT--------------TGTAGCACTTCCTTTGGTGGCTGGAC-----TTGA---------------TTTTGTGG-------------------TGTTGGCACTGGATGAGTGG------CGGTTG
i caeJap4.Scaffold54    C 0 C 0

a score=-20730.000000
s ce10.chrX               452030 125 + 17718866 GTTAGGTTGATGAGGCTGCTGTACTTGTTGCTGTGGAGTCTGT---------TGATGAAC---------TTGCTGCACCTGCTGAGG------------------------------TGTTTG------GGCATTATACTGTTG-----------TTGCTGAAGAT--------------------------AAATTTGAT----GTTTTAGT-------------------AAAAAAG
s cb4.chrX              21002801 129 - 21540570 gtggtgctgtt---gttgctggggttgttggtgttgaatttgttgtggt---cgttgtacttg------ttgctgtacttgctgttg------------------------------cttat------------tgtgttgtgG-----------CTGAAAATGTT--------------------------AGCTTTGAtgattaatttaaa-------------------aaaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   290463 230 -  1162296 gtagtattgttgtggttgctggtggagttgttgttggggttgctgtggtgtaggttggacttgttgAACTTGATGGGCTTGTTGCtggaaaaattcataaatttgaaGTTCAGTCGTCCCATG-------AAAACGTGCAGCGGGCCGGGCCACTTTGAACATTTGACAAGCGTCACAGTAcaagaatttgaaactttgat--ttgttttcaaattgttctgatttttttgcaaaacag
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       97626 108 +   193288 ---------------------------ctgatgttgattctgctgtaat---tgttg------------ttgctgttgttgttgcaa------------------------------CCCTTGTGGAATAGAACCATACagctg-----------ctgaaaaaaat--------------------------aaattaaaa----gtcataaa------------------ttaaacaa
i caePb3.Scfld02_254    C 0 I 2729
s caeJap4.Scaffold54       55668  92 +   258924 --------------------------TATAGTATTGAGACTGTTGG------TAATA------------TTGCACTGGATATTGTGG------------------------------TTTTTG------GGTGGCGTATTGCTG---------------------A--------------------------AAATATAGT--TTGATATGTA------------------TAAAACAG
i caeJap4.Scaffold54    C 0 I 2157
e caeSp111.Scaffold630   5483024   3 + 20921866 I

a score=-2365.000000
s ce10.chrX               452155 18 + 17718866 ---------------TATCTCGA--------AAAAATT-----ATA----
s cb4.chrX              21002930 19 - 21540570 gt-------------tatgctca---------aaaatt-----gta----
i cb4.chrX              C 0 I 2789
s caeRem4.Crem_Contig24   290693 50 -  1162296 ttgaattttcgactatatttccatttatcgataaaattcaagggtacata
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e caeSp111.Scaffold630   5483024  3 + 20921866 I

a score=-1094.000000
s ce10.chrX               452173 138 + 17718866 TATTTTTT-----CGTTGGATTATCACT----AAAATTTCAAGAAAAGTTCACAC------------TTTCGAAAA--------------------ATGGTGGCTTCTCTTTTT----------------ATGATCATGGTGATAAACTTTAAGGATCAGTGCGTCAATGGGAAATTAGTTTCTTGTA---GTTTCTT
s caeRem4.Crem_Contig24   290743 193 -  1162296 ggatttttgactatttttgataaaaactttgaaaaatgttgtgaaaaatttagacaccgagccgatattttgcaagtctggtccCATGTCACTAACATGTTGTCTTCCGTTTACCCCCGATTTCCAATAAATAATCTTAGCG-----TTTAAAGTCCTACTGTACCAGTCTGGAATGCTATTTCTGCAAACGTCTCCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21002949 2789 - 21540570 I
e caeSp111.Scaffold630   5483024   3 + 20921866 I

a score=-4262.000000
s ce10.chrX               452311 65 + 17718866 -AAAATTTGTTTTTTCTACGGGACTCTTACAAGAAAATATTGTTAGAAATTACTCACATTATA----------------------AAA
s caeRem4.Crem_Contig24   290936 79 -  1162296 TAAtttctcccctttttttaATTCGCC------ATCATATTCTTCCATATTCACTAGATTTTACCTGATAGTATGgttgttgaga---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5483027 49 + 20921866 -aaaatatagttttgttgcaaaac-------------tgatttttcaaacttactGAGTAATA-------------------------
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21002949 2789 - 21540570 I

a score=10779.000000
s ce10.chrX               452376 132 + 17718866 CTGTTGTTGTTGAGGTTGTTGA------------GGTTGTGGTTGTTGAACTGGGAATGGTGTCGAATAACCATATTGTTGCTGTTGATAACCTTGGGGCTGTTGAGTTTGTTGAGGTTGATGATAAGGTGGGAGGCCGTACTG---------------
s cb4.chrX              21005738 132 - 21540570 ---CTGTTGCTGTTGTGGTTGAACACGTGTCAGTGGTTGTGGTTGCTGCGATGGATATGGCATCGAGTATCCgtattgttgttgttg---------tggttgttggaagttttgtttttgctgttgttgttgatttgGGTGCAG---------------
i cb4.chrX              I 2789 C 0
s caeRem4.Crem_Contig24   291015 126 -  1162296 ttgttgtggttgttgtggttga------------gtttgtccttgttgagttgGGTATGGAGTGGAATATCCGTAAtgttgttgttggaa------gggctgttggacttgttgtggttgttgttgatgttggAATCCGTACTG---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5483076  96 + 20921866 ---CTGTGGTCgttgttgctgt------------ggctgt------------------------------------tgtggctgctg---------aacttgttgaacttgttgtg---gctgaggctgctgaTTCGGGTATGGAGTGGTGTAGTATTG
i caeSp111.Scaffold630  C 0 I 32
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=-3647.000000
s ce10.chrX               452508 38 + 17718866 G----AAATTATTAGTCTGACAGGGGTCTATAAAATTTCAAA
s cb4.chrX              21005870  1 - 21540570 A-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   291141 37 -  1162296 AATTTTAACAATTATGCTTACATAAG-----AATTTTCCAAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e caeSp111.Scaffold630   5483172 32 + 20921866 I

a score=-1405.000000
s ce10.chrX               452546 13 + 17718866 GGCGAAACCAG-TA
s cb4.chrX              21005871  5 - 21540570 --------CCG-TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   291178 14 -  1162296 TCTCCTACCTGTTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5483204 13 + 20921866 GATGGAGCCCA-TA
i caeSp111.Scaffold630  I 32 C 0
e caePb3.Scfld02_254       97734 2729 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=40189.000000
s ce10.chrX               452559 77 + 17718866 CTAACCTGTTGATTATATTGATTATTTT---------GTTGTCCCCAGTAGTTTTGGGTTTGTTGTCCGTAGAATGGAGCCTGCAA
s cb4.chrX              21005876 72 - 21540570 -----CTGCTGGTTGTATTGATTTTGTT---------GTTGACCCCAGTAGTTTTGAGTCTGCTGTCCGTAGAGTGGTGCCTAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   291192 81 -  1162296 -----CTGTTGATTATATTGATTCTGTTGCTGCTGTGGTTGTCCCcaataattttgagtttgttGGCCATAGAATGGAGCCTATAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5483217 72 + 20921866 -----CTGTTGGTTGTATTGGTTTTGTT---------GTTGTCCCCAATAGTTTTGCGTTTGTTGACCGTAGAATGGAGccttcaa
i caeSp111.Scaffold630  C 0 I 250
s caePb3.Scfld02_254      100463 76 +   193288 CTTACCGGCTGGTTATACGGATTCTGTG---------GCTGTCCCCAATAATTCTGTGTTTGTTGATTGTAGAATGGCgcctaaa-
i caePb3.Scfld02_254    I 2729 C 0
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=18409.000000
s ce10.chrX               452636 179 + 17718866 -------------TTTG-----AATATGTATTTTTTTTTTTGAAAACCTAGAAACCTGGGTATAGTAAAACTGTTGCTGCTG------TTGGTGGAACGGCTGCTGGAAGTGATTTTGATGGTTCCAGAAGTTGTT---ATACGGTTGT---------TGTGGTTGTTGAACTTGCGGCGCGacttgttgagcagtttgtagagcaacttgtgga-----------
s cb4.chrX              21005948 179 - 21540570 TAACGTTTTAATTTTCG-----TGGATAGCTTTTCTGGTT-------------ACCTGTGTGTAATACAAATTTTGCTGCTG------CTGGTGGAAAGAATGCTGGAAATGGTTTGGAGGAAGCAAAAAGTTGTT---GTATGGTTGT---TGTGGCTGTGGTTGCAAAAATGGTGCAGCCACTT------GAGGTTGTGGCGCCACCTGTGGA-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   291273 185 -  1162296 CGCAACTATAAATTAct-----gaaacttctttttttatt-------------accTGTGTATAGTAGAATTGCTGTTGTTG------CTGATGGAAAGGATGTTGGAATGGGTTGTGGGGGTACAGGAAGTTATT---GTATGGCTGT---TGAGGTTGTGGCTGTTGGacttgtgggataacttgttggggaacttgtggggcgacttgtggg-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5483539 151 + 20921866 ------------tttca------aaatgaa--------tt-------------acCTGAGTATAATAAAACTGTTGTTGTTGGAATGGCTGTTGAAGGT------------GATTGTGGGGGTAtaagaaattatt---gaacGGTTGT---------TGAGGTGTCTGCACTGGAGGGGCAACTG------------GTGGAGCAACTTGCGGCTGCACTACTTG
i caeSp111.Scaffold630  I 250 C 0
s caePb3.Scfld02_254      100539 180 +   193288 ----tatttttttttcgtgaaataaatgaaaaatatattt-------------accTGATTGTAATAATATTGTTGTTGATG---TTGCTGTTGTAAGTAGGGTTGATATGGGTTTTGTGGTTGCAAACCGTTGTTTGGGAACTGATGCGGTTGGGCATGAGGCGCTTGTGCTTGATGAGTGA---------------ATTGAGGGACTTGTAAA-----------
i caePb3.Scfld02_254    C 0 I 411
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=4978.000000
s ce10.chrX               452815 148 + 17718866 gcaacttgtggagcaacttgtggaTGAGTCGGAGCAGTCGG------AGCAACAACCGACACTGATCTTGCTTGCTGAATATGCTTTGCTGATTGGGTAACAAGTTTTTGAGTCGTGGTTGGAGAATGGGTTGCACG---------------TGTTGTAGTGGTTACTT------------------------
s cb4.chrX              21006127 145 - 21540570 ACAACTTGAGGAGC------------------TGGAGGTGG------AGCAACTTGTTGAACAGAGCGAGTTTGCTGAACATGTTTCTGGGTTAATGTGGT---------GGTAGGGATTGATTTTGGAGAAGTCGT---------------GGTTGCTTGGGAGGATGCAGGAAGAACAGTAGGAACAAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   291458 145 -  1162296 gcaacttgtggAGC------------------AGCGGTAGG------AGCAACAGCAGGCACGGATCGGGCTTGCTGAACATGTttcggggttactgtagc---------agtGGGGGCTGGTTTTGGGGTGGTATTTGGAGTATTTGGGAGGGTTGCAGGGGTGGATGCAGGTAG---------------TT
i caeRem4.Crem_Contig24 C 0 I 373
s caeSp111.Scaffold630   5483690 116 + 20921866 -----CTGTGGCAC------------------AGGAATTGGTTGGGTCGGAGCAGCTGGCACGGATCTCGCTTGCTGAACATGTT------TTGATGGGAC---------AGTGGTGGTTGGAAGTGTGGTATGCGG---------------GGATGCTGGGGTCagtt------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      100719 411 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=4413.000000
s ce10.chrX               452963  89 + 17718866 ------TTGGTGCAGTTGTTGTAGCAGATGATGTTTTGG---------GTGCTTGGGTTGTTGT---TGTTGTAAGAATTATTGGTGCCTTAA-TTAGACTCATGCAA-
s cb4.chrX              21006272  83 - 21540570 ------TTGGTGAAGTAGTAGTAGT------TGCTTTTG---------TTGTTGTAGTAGGTTTCTTTGTTGTGAGGTGACT---TGCCTTAA-TAAGAACCATGCAA-
i cb4.chrX              C 0 I 86
s caeSp111.Scaffold630   5483806 103 + 20921866 tggttgttgttgtaatagagatagt------tgttgtagtgggtgcacttgttgtagttgttgttggtgttgtaAGGAGTATGGGTGCCTTAATTATGATTCATGCGAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      100719 411 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e caeRem4.Crem_Contig24   291603 373 -  1162296 I

a score=573.000000
s ce10.chrX               453052 6 + 17718866 CTTGGA
s caeSp111.Scaffold630   5483909 6 + 20921866 CTTGGA
i caeSp111.Scaffold630  C 0 I 219
e caePb3.Scfld02_254      100719 411 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21006355 86 - 21540570 I
e caeRem4.Crem_Contig24   291603 373 -  1162296 I

a score=0.000000
s ce10.chrX               453058 895 + 17718866  
e caePb3.Scfld02_254      100719 411 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21006355  86 - 21540570 I
e caeSp111.Scaffold630   5483915 219 + 20921866 I
e caeRem4.Crem_Contig24   291603 373 -  1162296 I

a score=373.000000
s ce10.chrX               453953 4 + 17718866 CATT
s caeSp111.Scaffold630   5484134 4 + 20921866 CATT
i caeSp111.Scaffold630  I 219 C 0
e caePb3.Scfld02_254      100719 411 +   193288 I
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21006355 86 - 21540570 I
e caeRem4.Crem_Contig24   291603 373 -  1162296 I

a score=206.000000
s ce10.chrX               453957 13 + 17718866 ---CCATGCACGTTCG
s caeSp111.Scaffold630   5484138 16 + 20921866 CTCATACACACTCCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      101130 13 +   193288 ---CTATACCCTTTCA
i caePb3.Scfld02_254    I 411 C 0
e caeJap4.Scaffold54       55760 2157 +   258924 I
e cb4.chrX              21006355 86 - 21540570 I
e caeRem4.Crem_Contig24   291603 373 -  1162296 I

a score=144.000000
s ce10.chrX               453970 1 + 17718866 C
s cb4.chrX              21006441 1 - 21540570 C
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig24   291976 1 -  1162296 C
i caeRem4.Crem_Contig24 I 373 C 0
s caeSp111.Scaffold630   5484154 1 + 20921866 C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      101143 1 +   193288 A
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       55760 2157 +   258924 I

a score=168901.000000
s ce10.chrX               453971 243 + 17718866 ACTCACAATACTGGAATCAGTAAGATCTGGCAAAACTTTGAGCTCGTCGACTTGCTGCTGCACCACTATACTCTGCTCTTTACGCTGATTCTCGAAATTTGTGCTGATGATTCGCGAAGCATCAGTAATTTTCTGACGAATATTGTTTCTCTTGTCGGGAATGTTTTGCACCGCTGCATTGAAGTCATACTTTGCCGGTTTCTCAATGTTCTTATTCCCTTCCACCTACAAAACATA---AAAGCT
s cb4.chrX              21006442 246 - 21540570 ACTCACAATATTGGAATGTGTCAAGTCGCGAAACACTTTGAATTCATCAACTTGTTTTTGAATTACGATACTCTGCTCTTTACGCTGATTTTCAAGGTTTGAATTGATAATACGAGAAGCGTCTGTGATTTTTTGACGAATCGTGTTTTTCTTGTCAGGAATGTTTTGTACTGCCGCGTTGAAGTCATACTTGGCAGGTTTCTCAATGTGTTTATTCCCTTCCACctacaaaacagaaaaagaggT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   291977 240 -  1162296 ACTCACAATGCTGGAATCAGTAAGATCTGGTAACACTTTGAATTCGTCCACTTGTTTTTGGAACACAATACTCTGCTCTTTTCTCTGAttgtcaaaatttgagttgaTGAGTCGAGAAGCGTCGGTGATCTTTTGAcgaatcttgtttttcttgtctgGGATGTTCTGTACTGCCGCGTTGAAATCATACTTGGCAGGTTTTTCAATGTGTCTATTCCCTTCCACCTACAAAAC------AAAGGG
i caeRem4.Crem_Contig24 C 0 I 29
s caeSp111.Scaffold630   5484155 237 + 20921866 ACTCACAATACTCGAATCAGTCAAATCGGGCAACACTTTGAACTCATCGACTTGTTTCTGAATCACAACACTCTGCTCTTTACGctgattctcaaaattcgaattgatGATGCGTGAGGCGTCGGTGATCTTTTGTCTGATTGTGTTTTTCTTGTCTGGGATGTTTTGGACTGCCGCGTTGAAATCATACTTGGCTGGTTTCTCAATGTGTCTATTCCCTTCCACCTACAA---------AAGTGT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_254      101144 241 +   193288 ACTTACTGTATTTGCGTTTGTTGGGTACGTCAAAGCTTTGAATTCATcgacttgtttttgaaaaactaattgtTGACTTTTTGGTTGACTTTCAAAGTTTGAGTTGATTATTCGAGACGCGTCAGTAATTTTTTGCCGGATCAAGTTCTTTTTATCTGGTATGTTCTGCACTGCTGCATTGAAATCATATTTGGCTGGTTTTTCGATATGCCGGTTTCCTTCAACCTGCAATAt-----caaacat
i caePb3.Scfld02_254    C 0 I 38
s caeJap4.Scaffold54       57917 229 +   258924 ACTCACAACTACAGTCTGCCCATGATTTGGAACCACTCTGACTTCATCCACCGATTTCTCGACCACCACGCCTTGATTAGGGTTCTGATTATCAAAACTGTTGTTAATTATCCTTGAGGCATCGGTAATTTTCTGTCTAATGGCGTTTCTCTTGTCAGGAATATTTTGAACAGCGGCATTGAAATCATACTTGGCTGGCTTCTCGATGTGCCGATTCTTTTCCACCTAT-----------------
i caeJap4.Scaffold54    I 2157 C 0

a score=-3285.000000
s ce10.chrX               454214 32 + 17718866 TGTTGAAAAGAATAACCAAGAAAACAAAGGCA
s cb4.chrX              21006691 12 - 21540570 --------------------CGAGtgatgaaa
i cb4.chrX              I 3 I 11
s caeSp111.Scaffold630   5484393 14 + 20921866 ------------------GGTGGGTGGAGAGA
i caeSp111.Scaffold630  I 1 I 3
s caePb3.Scfld02_254      101423 31 +   193288 AGCTAAGCAAAATAA-CAGGAGAGTGAAGGCA
i caePb3.Scfld02_254    I 38 I 3
s caeJap4.Scaffold54       58146 23 +   258924 ---------GCATaattaagaaaataaaatat
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   292217 29 -  1162296 I

a score=125272.000000
s ce10.chrX               454246 242 + 17718866 CCAGGAAGAAACA---------------AAAAGAAAAAAAGAAATTTCA-------------------------------AAACTTACTTGAGCTACAATTTCATCAATTTCTTCCTTTGAAAGCTTGCTCTTTTTGAGCACTTCAACCAGCTTGTCAAGCTTCGGCACAATAGGTTGCGTCTTCGTTCCATGAGTAGCTATCACATTTCTTTTAAGTTCAT---CTGTGCTTTCAGCGTCGATAGTTGGAATCACTTGTTGGCCAATTTCAGTTT--TCTTGTTTATCTGGA
s cb4.chrX              21006714 228 - 21540570 CTAGGATGTAATT---------------AGAA----ACA-------ACA----------------------------------CTCACTTGTGCAAcaatttcatcaatttcttcCTTTGACAGCTTACTCTTCTGAAGAACTTCAACCAGCTTGTCTAATTTAGGAACAACAGGTTGTGTTTTTGCTCCATGAGTTGCGATGACGTTTCTTTTGATCTCAT---CAGTGCTTTCAGCGTCAATGGTTGGGATCATTGGCTTGCTTTTTTGAGCCT--TTTTGTTGATCTGAA
i cb4.chrX              I 11 I 1172
s caeRem4.Crem_Contig24   292246 232 -  1162296 CCAATAACTAATA---------------AAAAGTGCATA-------TGG----------------------------------CCCACCTGAGCAacaatttcatcgatttcttcCTTAGAAAGTTTGCTCTTCTGAAGTACTTCCACTAGCTTATCAAGTTTTGGAACCACTGGTTGGGTCTTGGTACCATGGGTTGCAATAATGTTTCGTTTCAGTTCAT---CGGTACTTTCAGCATCAATGGTTGGAATAACTGGGtgaactttttcaactt--tttgtttgaTCTGGA
i caeRem4.Crem_Contig24 I 29 C 0
s caeSp111.Scaffold630   5484410 235 + 20921866 TAAAAATGGAACT---------------AAAAACCCAAG----GTTTCA----------------------------------CTTACCTGTGAGACGATCTCGTCAATTTCTTCCTTTGAAAGCTTGCTTTTTTGGAGTACTTCTACAAGTTTGTCGAGTTTCGGTACAATCGGTTGGGTTTTCGTTCCATGGGTGGCTATGATGTTTCTCTTGAGCTCTT---CAGTGCTCTCAGCATCTATAGTGGGGATAACTTGCTGccctttttcagatt--ttttgttgatctgaa
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_254      101457 284 +   193288 TATGAATGCAAGTTTGATagatttttacaaaaaccaata----ttttcatattttgtagcATAACAtgaatcattcaaaaagttttaccTGAGCTACTATTTcatctatttcttcttttgaaagtttgcttttttgaagaacttcaaCAAGCTTGTCGAGTTTCGGAACAACCGGCTGTGTTTTCGTTCCATGAGTAGCaattatattctttttcagctcttccGCGGTGATTTCATCGATTACATCAGG-----TTTGTCTTCTTTATTCGCGCTAGTTTTCTTGATCTGCA
i caePb3.Scfld02_254    I 3 C 0
s caeJap4.Scaffold54       58169 219 +   258924 ccaGAAACCATTT---------------GGAA--------------TGA----------------------------------CTTACTTGATTTACAATTTCATCAATTTCTTCTTGCGACAACTTGCTCTTCTGAAGAACTTCGACTAGTTTTTCTAGCTTAGGAACGATTGGTTGAGTTCTTGTTCCATGGGT---AATTACGTTTTTCTTCACTTCTT---CTGTGCTTTCCGCGTCAATGGTTGGGATT-TTCGATG--CTtcgggatttt--ttttatttatctgaa
i caeJap4.Scaffold54    C 0 C 0

a score=970.000000
s ce10.chrX               454488 2 + 17718866 GA
s caeRem4.Crem_Contig24   292478 1 -  1162296 -A
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold630   5484645 2 + 20921866 aa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      101741 2 +   193288 AA
i caePb3.Scfld02_254    C 0 I 375
s caeJap4.Scaffold54       58388 2 +   258924 aa
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21006942 1172 - 21540570 I

a score=-126.000000
s ce10.chrX               454490 5 + 17718866 GAAAA-
s caeRem4.Crem_Contig24   292480 5 -  1162296 GAAAC-
i caeRem4.Crem_Contig24 I 1 I 4
s caeSp111.Scaffold630   5484647 5 + 20921866 gacaa-
i caeSp111.Scaffold630  C 0 I 8
s caeJap4.Scaffold54       58390 5 +   258924 -aaaat
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      101743 375 +   193288 I
e cb4.chrX              21006942 1172 - 21540570 I

a score=693.000000
s ce10.chrX               454495 5 + 17718866 TATTT
s caeRem4.Crem_Contig24   292489 5 -  1162296 CATTT
i caeRem4.Crem_Contig24 I 4 C 0
s caeJap4.Scaffold54       58395 5 +   258924 ttttt
i caeJap4.Scaffold54    C 0 I 1662
e caePb3.Scfld02_254      101743 375 +   193288 I
e cb4.chrX              21006942 1172 - 21540570 I
e caeSp111.Scaffold630   5484652 8 + 20921866 I

a score=318.000000
s ce10.chrX               454500 53 + 17718866 GGAATTCGTGAAAAAACTGACAGCTTAATTGAGGAATGGTTATTGAAACAGTT
s caeRem4.Crem_Contig24   292494 51 -  1162296 TGTGTCTATtaacaaagaaattttttgat--gcggatgattaaaaaaacagCT
i caeRem4.Crem_Contig24 C 0 I 8
e caePb3.Scfld02_254      101743 375 +   193288 I
e caeJap4.Scaffold54       58400 1662 +   258924 I
e cb4.chrX              21006942 1172 - 21540570 I
e caeSp111.Scaffold630   5484652  8 + 20921866 I

a score=0.000000
s ce10.chrX               454553 885 + 17718866  
e caePb3.Scfld02_254      101743 375 +   193288 I
e caeJap4.Scaffold54       58400 1662 +   258924 I
e cb4.chrX              21006942 1172 - 21540570 I
e caeSp111.Scaffold630   5484652   8 + 20921866 I
e caeRem4.Crem_Contig24   292545   8 -  1162296 I

a score=196.000000
s ce10.chrX               455438 8 + 17718866 TTTGAGAA
s caeSp111.Scaffold630   5484660 8 + 20921866 tttgatGT
i caeSp111.Scaffold630  I 8 C 0
e caePb3.Scfld02_254      101743 375 +   193288 I
e caeJap4.Scaffold54       58400 1662 +   258924 I
e cb4.chrX              21006942 1172 - 21540570 I
e caeRem4.Crem_Contig24   292545 8 -  1162296 I

a score=349.000000
s ce10.chrX               455446 5 + 17718866 TATTT
s caeSp111.Scaffold630   5484668 3 + 20921866 --TTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      102118 5 +   193288 TGTTG
i caePb3.Scfld02_254    I 375 C 0
e caeJap4.Scaffold54       58400 1662 +   258924 I
e cb4.chrX              21006942 1172 - 21540570 I
e caeRem4.Crem_Contig24   292545 8 -  1162296 I

a score=-7.000000
s ce10.chrX               455451 5 + 17718866 TTCAC
s caeRem4.Crem_Contig24   292553 5 -  1162296 TTTGT
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold630   5484671 5 + 20921866 ATTCC
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_254      102123 5 +   193288 TTTAA
i caePb3.Scfld02_254    C 0 I 1
e caeJap4.Scaffold54       58400 1662 +   258924 I
e cb4.chrX              21006942 1172 - 21540570 I

a score=77131.000000
s ce10.chrX               455456 132 + 17718866 AAACTGACCAAATCCTCATAATCCAATTCTTCTTCAGGCTGAGTTTTCCCATTTTTGTCTGGCAGCTGAATTCTGATTTGACGCG---GTGGTGGACTTGTTGGCTCAGTAGTTGCCTCTTCTTCGTACTGAAAT
s cb4.chrX              21008114 129 - 21540570 aaaattacaagGTCTTCATAGTCCAACTCTTCCTCTGGCTCTGCTTTCCCGTCTTTGTCAGGTAGCTGAATCCTAATTTGTCTTG---GGGGTGGAGTAGTTGGTTC---GgttgtctcttcttcttcctataAA
i cb4.chrX              I 1172 I 5
s caeRem4.Crem_Contig24   292558 132 -  1162296 AGTCTTACCAAATCTTCATAGTCCAACTCGTCTTCAGGCTCAGTTTTACCGTCCTTGTCTGGCAATTGAATTCTGATTTGACGTG---GTTGCGGAGTAGTTGGCTCTGTGGTTGTCTCCTCTTCATCCtacaaa
i caeRem4.Crem_Contig24 C 0 I 73
s caeSp111.Scaffold630   5484677 130 + 20921866 CATTTCACCAAGTCTTCATAATCCAGCTCTTCTTCTGGATCAGTCTTCCCATTCTTATCTGGCAACTGAATTCTTATTTGTCTTG---GTGGAGGAGTAGTTGGCTCGGTGGTCGTCTCCTCTTCATCCTGAA--
i caeSp111.Scaffold630  I 1 I 4
s caePb3.Scfld02_254      102129 135 +   193288 AACATTACCAAGTCTTCATAATCAATTTCCTCTTCTGGAGCCACGTTTCCAGTCTTGCCAGGTAGTTGAATTCTGATTTGACGTGGTTGTGGTGAAGTGGTAGTCACAActtctgtttcttcattgTCCTGAAAT
i caePb3.Scfld02_254    I 1 I 369
s caeJap4.Scaffold54       60062 119 +   258924 AAACTCACAAGGTCCTCATAATCCGATTCTTCTTCAATCGCGGATCCCCCGCCACTATTTGGTAGTTGAATTCTTATTTGAC------GTGGTGGAACGGTGGTAACAACTTCtgcttcctcttc----------
i caeJap4.Scaffold54    I 1662 C 0

a score=0.000000
s ce10.chrX               455588 4 + 17718866 TAGT
e caePb3.Scfld02_254      102264 369 +   193288 I
e caeJap4.Scaffold54       60181 0 +   258924 C
e cb4.chrX              21008243 5 - 21540570 I
e caeSp111.Scaffold630   5484807 4 + 20921866 I
e caeRem4.Crem_Contig24   292690 73 -  1162296 I

a score=-4578.000000
s ce10.chrX               455592 17 + 17718866 CA----------CATTCTAATTTTCTC--
s cb4.chrX              21008248 27 - 21540570 CAATTTGTTGGGAAACTGGATAAAGTT--
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold630   5484811 15 + 20921866 ------------AAATATAATTGATTC--
i caeSp111.Scaffold630  I 4 I 2
s caeJap4.Scaffold54       60181  5 +   258924 ------------------------ttctt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      102264 369 +   193288 I
e caeRem4.Crem_Contig24   292690 73 -  1162296 I

a score=-12692.000000
s ce10.chrX               455609  40 + 17718866 CACATAAAAATTAAAAA----AAT------------------------------------------------------ACCTCGTCAGG------------TGTTGTAGT---
s cb4.chrX              21008275  46 - 21540570 CAAATTTAGCCTAAATA----AAA------------------------------------------------------ACCTCATCAGG------AAACAGTGTAGTAGT---
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24   292763 106 -  1162296 gaaaatgaGGTGAAATA----AAAACTGCGGGACCCAGAAtctaaagtttaaaaaaaaatgtatgttcGAAAAAACGCACCTCATCAGGCACAACGAAAAACTCCGTAGT---
i caeRem4.Crem_Contig24 I 73 I 6
s caeSp111.Scaffold630   5484828  46 + 20921866 -------CGCCAAACTATAGTAAA------------------------------------------------------ACCTCTTCTGGCACCACGAA---CTCAGTAGT---
i caeSp111.Scaffold630  I 2 I 3
s caeJap4.Scaffold54       60186  28 +   258924 ----------------------------------------------------------------------------------caacAGTAGTTGTTAA---CTCAGTGGTGGT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      102264 369 +   193288 I

a score=181642.000000
s ce10.chrX               455649 313 + 17718866 AGTTGTTGTTGATTCTGTAGTCGTTGTCGAG---GTAGTTGGAGTAGTCGTGTCAACTTCATAGTCTTCT---TCTTCAATATCCACAAGACCGTCAGGTGCCTTTGGCGTTTTTTTCTCTG---TAACTCCCGGAATCTCAGCGTTCTCATCGTAATCGTCTATGTTCGGCGCGGGGAAGCTAGTCCCAAACTCTGGCCCAAGTCCGC------CAGAAGTTTTTCCAGGTGCTGGACCAAGAGCACCAAGGTTCAAACCACCACCTCCTCCTTGCTTCATAAGTGCTTCTGCAAAAATTGT---------------CTGTTGTTTCAATAGA------TCAGAAACG
s cb4.chrX              21008327 300 - 21540570 GGTTGTAGTAGCTTCGGTTGTTGTGGTT------GTTGCTGGTGTGGTT---TCAATTTCATAGTCTTCA---TCTTCAATATCTACAAG-CCATCTGGTGCCTTTGGCGACTTCTTCTCAG---TGACTCCCGGAATTTCTGCATTCTCGTCATAGTCATCTATGTTTGGCGCTGGGAAGCTGGTTCCGAATTCCGGTCCGATTCCGCCA---CCAGCTGTTTTTCCTGGGGCTGGTCCAAGCGCTCCAAGATTCAAGCCGTTACCACCACCTTGTTTCATCAGAGCTTCTAAAAGAGAAAA-----------------------CTAA-AAT------CAAACAGAG
i cb4.chrX              I 6 I 4
s caeRem4.Crem_Contig24   292875 314 -  1162296 AGTCGATGGCGCTTCAGTAGTTGTAGTG------ATAGCTTTAGTAGTT---TCAATCTCATAgtcctcatcttcttcaatATCAACAAGACCATCTGGCGCCTTTGGTGATTTTTTCTCCG---TAACACCAGGGATCTCGGCATTCTCATCATAGTCATCAATGTTAGGTGCTGGGAAGCTAGTTCCGAATTCTGGACCAATTCCTCCA---CTGCCAGATTTTCCTGGTGTTGGACCAAGGGCTCCGAGGTTCAGACCGTTTCCTCCACCTTGCTTCATGAgagcttctgaaaatataaa-------------------tatttcaa-aatgtgatgTAAACAAAT
i caeRem4.Crem_Contig24 I 6 I 4
s caeSp111.Scaffold630   5484877 306 + 20921866 GGTGGTTGGCGCCTCTGTAGTGGTAGTGGTA---GTCTTTGTAGTGGTC---TCAAGATCATAATCCTCA---TCTTCGATATCAACTAGACCATCTGGAGCTTTTGGTGTCTTTTTCTCAG---TGACTCCCGGAATTTCAGCATTTTCATCGTAGTCATCGATATTTGGAGCAGGGAAGCTGGTTCCGAATTCTGGTCCAAGGCCAC---------TAGATTTTCCAGGTGCAGGTCCAAGAGCTCCGAGGTTCAAGCCATTTCCTCCACCTTGTTTCATTAGGGCTTCTATAAGAATTCA---------------AAGTTCtgtgaa-aat------tcaaaaatg
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_254      102633 315 +   193288 TGTCGTTGTTGTTTGAGTAGTTGTAGTTGCCTCTGTCGCTGTTGTTGTT---TCCAGTTCATAGTCTTCA---TCCTCAATATCAACAAGACCATCTGGTGCTTTTGGCGtttttttCTCCG---TCACTCCTGGGATCTCCGTGTTTTCATCATAATCTTCAATGCTTGGCGCTGGGAAACTGGTTCCGAACTCTGGACCAATACCGCCT---GCAGTAGATTTTCCAGGCACTGGGCCAAGAGCACCAAGATTTAAGCCATTCTGTCCTCCTTGCTTCATTAATGCTtctaaattatttta---------------ttttgattttag-aaa------aaaaaaacg
i caePb3.Scfld02_254    I 369 I 1272
s caeJap4.Scaffold54       60214 314 +   258924 AGTTGTGGCTCTCTCTGTAGTTGTAGTA------GTGGGTTGGGTGGTC---TCTCCCTCGTAATCTCCA---TCTTCAATGTCCACAAGACCGTCTGGCGCCGTTGGAGTTTTCTTTGCAGAGCTAACGCCCGGAATTTCTGCCGTCTCGTCATAGTCGTCTATGTCCGGAGCTGGGAAACTCGTTCCAAACTCTGGACCAATTGCGCCACTTCCGGAAGACTTTCCGGGTGCCGGTCCAAGCGCTCCCAGGTTAAGTCCA------CCACCGCTTTTCATTAATGcttctgaaataaataaaaatgtttgtttttgttgttgtggtGA-GG----------------
i caeJap4.Scaffold54    C 0 C 0

a score=-5862.000000
s ce10.chrX               455962 7 + 17718866 ---CTAAA-AT
s cb4.chrX              21008631 5 - 21540570 ---CTCAA---
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   293193 5 -  1162296 ---ATAAA---
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold630   5485183 5 + 20921866 ----caaat--
i caeSp111.Scaffold630  C 0 I 3
s caeJap4.Scaffold54       60528 6 +   258924 CTAGTG-----
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      102948 1272 +   193288 I

a score=113009.000000
s ce10.chrX               455969 132 + 17718866 ACTAACGAGAATTTTTAGCTGTCTGTTCTAAAACTGCTGGGAACCAATTTCCTTCCGAGGCCTGGTTTAGTACTCCAACTCCAGTTCCAGTCAGTTGCAGGGCTCCTTGAGCAAGCTGATACACTAT-----AAGAA--------------
s cb4.chrX              21008636 137 - 21540570 ACTTACGAGAGTTTTTCGCAGTTTGTTCTAAAACAGCTGGGAACCAATTACCCTCTGAAGCTTGATTGAGCACACCGACTCCTGTTCCAGTCAGTTGAAGAGCTCCTTGTGCAAGTTGATACACTGAACATTAGTTA--------------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   293198 132 -  1162296 ACATACGCGAGTTCTTGGCAGTTTGCTCCAATACAGCTGGGAACCAATTTCCTTCTGAGGCCTGGTTGAGTACTCCCACTCCAGTTCCTGTCAGTTGGAGGGCTCCTTGTGCAAGTTGATACactaa-----aataa--------------
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold630   5485191 132 + 20921866 ACATACGCGAGTTTTTTGCGGTTTGCTCCAGAACAGCTGGGAACCAGTTTCCTTCAGAAGCTTGATTAAGAACTCCAACACCAGTTCCAGTCAGTTGAAGGGCCCCTTGAGCTAGCTGGTATACtgc-----aaata--------------
i caeSp111.Scaffold630  I 3 I 5
s caePb3.Scfld02_254      104220 132 +   193288 ACTCACGAGAGTTTTTAGCAGTTTGCTCCAGTACGGCAGGAAACCAATTTCCTTCGGACGCTTGGTTCAAGACCCCGACGCCAGTTCCCGTTAGCTGAAGTGCTCCTTGCGCAAGTTGATATActgc-----aaaaa--------------
i caePb3.Scfld02_254    I 1272 I 257
s caeJap4.Scaffold54       60534 146 +   258924 ACTAACGCGAATTTTTTGCAGTCTGCTCCAAAACCGCTGGGAACCAATTTCCCTCGGAGGCTTGATTCAATACTCCAACTCCTGTGCCAGTCAACTGAAGGGCTCCTTGAGCGAGTTGGTAAACTAG-----AAGTTTGGCTATGTAatgg
i caeJap4.Scaffold54    C 0 C 0

a score=-8203.000000
s ce10.chrX               456101 30 + 17718866 TTTTAAATCCAATTTTTTTTGTCAATACCA-----
s cb4.chrX              21008775 23 - 21540570 GTAAGCATTTGATT-------AGAAAAATA-----
i cb4.chrX              I 2 I 1
s caeRem4.Crem_Contig24   293332 24 -  1162296 ttgtatacaaaacta------agaaaaaaa-----
i caeRem4.Crem_Contig24 I 2 I 1
s caeSp111.Scaffold630   5485328 27 + 20921866 ttagactCCAAATCCCCT---TGAAAATCT-----
i caeSp111.Scaffold630  I 5 C 0
s caeJap4.Scaffold54       60680 16 +   258924 -------------------tttcaaaaatttttgt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      104352 257 +   193288 I

a score=83227.000000
s ce10.chrX               456131 110 + 17718866 ACTTACACTGTCCAATCTGAGCTATCGCACCTCCGGCTTGACCGGCTGCCCCTGCTCCCGCAGCTCCCGCTCCAGCCAAGGCTCCCAATCCAGCA---CCATTTCC------TGGAA--AA---------
s cb4.chrX              21008799 118 - 21540570 GATTACATTGCCCAATTTGAGCAAGAGCTCCTCCTGCTTGACCCGCAGCGCCAGCACCAGCTGCTCCCGCTCCGGCAAGTGCTCCGATCCCAGCT---CCATTACCTTCAAATGAAACCAA---------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   293357 110 -  1162296 actcaCATTGTCCGATCTGAGCAAGTGCACCTCCCGCTTGACCAGCTGCTCCGGCTCCAGCAGCTCCTGCACCAGCAAGTGCACCAATACCCGCa---ccatttcc------tgaaa--aa---------
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold630   5485355 112 + 20921866 -CTTACATTGTCCAATCTGAGCAAGAGCACCTCCTGCTTGACCAGCAGCTCCAGCTCCGGCAGCTCCGGCTCCGGCAAGAGCTCCAACACCagcacctcctcctcc------tgaAA--CA---------
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_254      104609 110 +   193288 ACTCACATTGGCCGATCTGAGCGAGTGCTCCTCCTGCCTGTCCCGCAGCTCCAGCTCCGGCTGCTCCAGCACCTGCAAGGGCTCCAATACCAGCA---ccatttcc------tgaaa--aa---------
i caePb3.Scfld02_254    I 257 I 553
s caeJap4.Scaffold54       60696 118 +   258924 -cttaCGTTGCCCAATCTGTGCAAGTGCGCCACCCGCTTGTCCTGCGGCTCCTGCACCCGCACCCGCGGCACCAGCAAGCGCACCCAAGCCAGCA---CCATTTCC------TGGAA--AGTTTGTTTTG
i caeJap4.Scaffold54    C 0 C 0

a score=-7645.000000
s ce10.chrX               456241 22 + 17718866 TTATATGTAAAA----------------GTGTTTTCTA
s cb4.chrX              21008917 37 - 21540570 -TATATGTAAATTGGCCTTGCAATTTTGTCCTCTTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   293467 23 -  1162296 -tatttggtCACTGATCATA--------------TGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5485493 10 + 20921866 ----------------------------TCGtatgaaa
i caeSp111.Scaffold630  I 26 C 0
s caeJap4.Scaffold54       60814 27 +   258924 TTACATAACCGATAAAC-----------Gtgtttttta
i caeJap4.Scaffold54    C 0 I 1376
e caePb3.Scfld02_254      104719 553 +   193288 I

a score=5289.000000
s ce10.chrX               456263 221 + 17718866 TAATTGAAAA--TTTGTTAC---------------------ATATCTTAAATTTCGATCAAA----ATATACTT---TTTT--G-------------------TTGAA------TTCTATCACAAACAGGACATTCAGAAC-AAAAAAACCGATAAAGG--------TGTT---------------------------TTCCATTCCT-----------------TCCG--AATATTGCGTAAAAGATATC---------TCTTGTTTCCTAATGTATTCCGAAATCCAGTTCTTGCGTGATCTTCAAGTGTTTCTATATCTCTGCCAACCATCTC-TGCCAC
s cb4.chrX              21008954 277 - 21540570 tagtttccagtttttgataatatAAACATC-----------GAGATTTCGATTTCAATCAAA----TAATGTTT---CTTTGAG-------AACAGGT-----TCAAActaaatttgtatttt--tcaagatCT--CTAGCAAAAAACACCGATAAAATGCTCCACCTGTTTTGGTGTCTCTAGTGTCGAcgcaatt-ttctttttctgt--------tttcccaTCTGTAAATGTTGCGCGATAGATATC------------TTCATTTTAATGAATTCCG-ATTCCTGTTTTTGCGTGATTGTCCACTGTTTCTGTTTC--------CTATTTC-GGCAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   293490 302 -  1162296 TAATCTTAG---TGTGTCaatctcattcaa-----------aaaatgctaATTTTGATCGAATCTGTAGAATCTAGAATTTGGGTTGTCAAAACAGGTATAGATTGGAATAAATTTTCATCT-------GATTTGCCAATCCGAAAAAACCGATAAAgg--------tgttttgtttttcgggATGCCATGTTTCAT-TCCTTTTTCTACGTCTCT-ATTTCCCATCTGTGAATGTTGCGCGATAGATATCCCCCCGTCATCTCTCTTTTTAATGAATTCAA-AATCCAGTTCTTGCGTGATCGTCAAGTGCCtctgtttt--------ctatttcttgcCA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5485503 258 + 20921866 cagtttt-----tctgttattttttccCCACGACTTTGTCTAAGAATTCAAATGTATTCTGA----TTACATCT---------G-------AACAGAA-----CAGGAATGAATTTCGATCT---ACACaatcttccaa---aaagaaaccgATAAAGG--------tgttttctcatctt---tttcaggACACATCTCCAATTCCCACGTCTCTCAATTTCTGTCTG--AATGTTGCGCGATAGA-----------------------TAATGAATTCCG-AATCCAGTTCTTGCGTGATCGCCAAGTGTTTCTGTTGC--------CTCTTGC-CAC---
i caeSp111.Scaffold630  C 0 I 54
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I

a score=-3162.000000
s ce10.chrX               456484 32 + 17718866 CACTATTTCCCATTAGTTTAGAA----------------------GGAAATG-----AT
s cb4.chrX              21009231 22 - 21540570 AACCGCGC-------------------------------------GTATATACATACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   293792 59 -  1162296 CACCACACCACACTCTTttaggaaaagagagagaaataggaaaaagtaGATGCAAAAAG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I
e caeSp111.Scaffold630   5485761 54 + 20921866 I

a score=-50063.000000
s ce10.chrX               456516 325 + 17718866 ------AT----------TCGGCGCAATCGAACG--GCATTTGATA------AAAAA---------------------------------------------TGAGGATTGCGTCGCCAATTCGCA---------------------------------ACTGGGAGGAACGTGACAAAAAG---------AAGGATGCGGGAAAA---------GTGTATACATTGGTCAAACCTAAgtagggttctcaacagatttcacgaggttaacaacatgc----tgacg------------tcaaatttttctaggcgaaaaattccttgtaggtcaaaccgtaatgggatttcctgacaccacgtgactttgttaaaatgcatatttttgaa-cagttgtaacgtcatttttttacactttttcatttgccgacactacttgagtaaccccaTAAGAGTTTATC---------
s cb4.chrX              21009253 164 - 21540570 CTTAGGAT----------GCAGAAGCAAGGAAAT---TAGGGCaaa------aaggagg-------------------------------------------agaagagGAGAATGACAGACAGAA-----------------------------------------------------------------AAGGTGGCA----------------------------------------------------------TTCG----------CACGCAATctgaca--------------agaa----------gaaaaaa-----gaaagacaaat---------------------------------GCGAATATctgataacaaaa-aattg-----------------------------------------------agatcttGCCG-ATTTAATGTATCGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   293851 403 -  1162296 GTTAGGATAACGACGCCGACAATGGCAAGATGAT--ACaggggaga------gagaaagaacgACGCAATCCCAAGGAGAACGCGGTGAGGGATatatgataagaaaaaatggatgatGGAATGAGGATTGGATAATGTGTTGCGTGTGCGGATTGGCAACACAATGCAATATCATAGGAAGTTT-----TAATGTGGcgacaagaaaaaagtgtatGTGTACATTGGACCCACTAA----------TTGGAAATGTTTTCGA----GGGAACATGTGTTTTGGCATTGTTTACTGTCTGAGGATT--CATTGCGAAAAAAG-cctgaagaaaaaat----------------------------cttcgACCAGAACTCAACGTTAGAA-AATTGATAG--------TGGGAAACAAATCTATaagtctgttttttttcacaagactttgttgtttttaatggtttttt-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5485815 322 + 20921866 ------AT----------TCGGTGGGAAGGAGAACACCGAGGGATatatgataagaaaaaacgggGGAAT--------------------------------GAGGGAATGGAATGACGATTGGCA---------------------------------ACACGATGCAATATCACAGAGAATTCAGAGATAATGC-GCAGCGGAAAAAACGTTTATGTGTACGTTGG-------------------TCAGATACATTTCTGATTATGGAAACACCTTTAATGAAG------------TGAGAAAGAACGTTTCACAAACA--CTTGATTAAAAAGC----------------------------TATCTTTAAAATACTGATCCAAGAAGGATTCATAA-----GTTTTTGACGCTTATCAGAATGTCTTAATTTTATGAAGAG-TGTTACAGTATTTTTCGGGTTTATC
i caeSp111.Scaffold630  I 54 I 144
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I

a score=-2684.000000
s ce10.chrX               456841 61 + 17718866 ATATTATTTAACAGGGATATATATAGCATTAGTAACGTTGACAGGGA------------TAAAAGA------TCTCTGT
s cb4.chrX              21009417 56 - 21540570 GCG----------TGGATAT-TGGATCATCAGCAGCGGGGAGAGgcagatatg------aaaaaaa------tccttGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   294254 72 -  1162296 gtagAATACAGC-CAAATAG-TACTTCGTTATT-----GTAAAGGCAACtttgttttaaaaagaaacgaaGTTCTGTGT
i caeRem4.Crem_Contig24 C 0 I 46
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I
e caeSp111.Scaffold630   5486137 144 + 20921866 I

a score=-1505.000000
s ce10.chrX               456902 54 + 17718866 ACCCACGTCTAGAGTATATATTCAAAGAGTTTGCAATTTCAAAAGCTAAAGCGT
s cb4.chrX              21009473 19 - 21540570 ACATTGGTCGGAATTAT-TA----------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I
e caeSp111.Scaffold630   5486137 144 + 20921866 I
e caeRem4.Crem_Contig24   294326 46 -  1162296 I

a score=-3040.000000
s ce10.chrX               456956 45 + 17718866 TCAGATTTTC-------------AAATATAAAGCACACATTTGAAAACTGTAAAATAA
s cb4.chrX              21009492 10 - 21540570 TCggtttttt------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   294372 52 -  1162296 tcaaattttttcactttggATATAATTATAGTG-----ATTTTACATCTGAGAGAT-A
i caeRem4.Crem_Contig24 I 46 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I
e caeSp111.Scaffold630   5486137 144 + 20921866 I

a score=-18483.000000
s ce10.chrX               457001 139 + 17718866 AAATAAAAATAC------------TATTGAAAATGACAAAAAATGGTCTTCCAAAAGTAGAGGCTCAATTTTA------ACCTATTTTTCAA----------GAAATAAAATCACAAACAGAATATCACTGTCTTGCAAATAAAAAAAATATACCAG----AAGCTGAATT-------
s cb4.chrX              21009502 116 - 21540570 ------------------------tattcgaa-----aaaa----ttttatcaaatgggaaaacaggattttt------tcaaagttgctGA--TTGATCTTGAACTCATATTA-----TGAGTTCCCC---------------AAATTTTATAAAGTTCTAAGACGATATATGACT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   294424 154 -  1162296 TCATAGAGCTGCAGTTCTTAACGCTATTTGAAATACTAAAC----GTTTATCAAAAGAGAA-----GGTTTTTCAGTTATCACAGAAACTCATTTTGCCAAAGAAGTCCGTTCA-----TAATTTGCACTGC------AGctagaaatttagaaaaa----aaactggcaTTTCAATT
i caeRem4.Crem_Contig24 C 0 I 58
s caeSp111.Scaffold630   5486281  82 + 20921866 ----------------------------------------------------gaataagaa-----aattttt------acaaGCTCTCCAA-------AATGAGTTGATTTTA--ACCTaactttcca-------------aaaactttatATCAA----AGGTTGGTTT-------
i caeSp111.Scaffold630  I 144 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I

a score=-3624.000000
s ce10.chrX               457140 78 + 17718866 ----TAGTTAAA-TGAAAAATAAACTATAGACCCTACTCCAAAACTTTATAGACTCTGGTGTACGATTCCAAACGACAAGGTT
s cb4.chrX              21009618 20 - 21540570 ----TAGCTAAA-CGAAAGAAgttt----------------------------------------------------------
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630   5486363 34 + 20921866 AAAGCAATTAAAGCGGAAAATATAT-----------------AACACTATC--------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I
e caeRem4.Crem_Contig24   294578 58 -  1162296 I

a score=-9279.000000
s ce10.chrX               457218 83 + 17718866 CAGCAA------------GTTAAAAAAAATGAC--AATTATTAGAGTGTACAAAATTTTAGGTTTTTGAATACTCCACGTAATGCAATTTCAAGTCA
s cb4.chrX              21009641 71 - 21540570 caaaaaaaagtaccaattttagaaat-----attcATTCCATAAAAT---CATGATTTG---------------ACACGGATTTCA---TAAAAACA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   294636 61 -  1162296 CAGGAA------------TTTGAAACGCCTGACTAACTTACTAGAGCG--CAAAACTT------------------ACCGA-TGCA---TCAAAACA
i caeRem4.Crem_Contig24 I 58 C 0
s caeSp111.Scaffold630   5486397 44 + 20921866 ---------------------------------TAGTTAACTAAGAA---TATATTTTAA-------------TACTCCGA-ttta---taaaaaca
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I
e caeJap4.Scaffold54       60841 1376 +   258924 I

a score=-573.000000
s ce10.chrX               457301 1 + 17718866 C
s cb4.chrX              21009712 1 - 21540570 T
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24   294697 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 18
s caeSp111.Scaffold630   5486441 1 + 20921866 a
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold54       62217 1 +   258924 C
i caeJap4.Scaffold54    I 1376 C 0
e caePb3.Scfld02_254      104719 553 +   193288 I

a score=65945.000000
s ce10.chrX               457302 281 + 17718866 AACTCACCAAGAGCCCCCCCGAGCAGGGATGTCGCTAACGATGCAATTTCCCCGAATTGTGCATCGGTACCGGAGATAAGTAAAAAAATGAAGGAGGCGAATTTCTCCCAACGCATGTC--AAAATGCGCTGTCAATTCAAGAGCGAAGTGAAAGAAA-----ATG----A------ATTGG----GGACG----------AGGCA---AGGC---GCAACCGAATGACTGT--GTTTAAGACGATCAAC----ACGGGCAACACGAAGCTGC---------TGCCGCTGCT--TCTGAATG----CTTTTCGGAG-------------AGACAGCGAGA----------------GAGAGGGGG------CCT
s cb4.chrX              21009723 310 - 21540570 AACTTACCGAGGGCTCCACCAAGAAGCGATGTGGCTAGTGAAGCAATCTCACCAAACTGTGCATTTGTGCCGGATA---TTAGTAACAAAAGAAAGGTAAATTCTTCCCAACGCATTTCGAA-AATGCG-TCTCAATTCAAGAATCGAGTGGGAAAAC-----GAT----A------GATGA----AGACGAGCGGCTTGGTAGGA---GGGC---GCAACCGAATGACTTTGGGTTTAAGACGATCAAC----ACAGAC-ACACAAA---ACGCGAAACGATGATGAAGCCCAGCTGAATA----CGTTTTGGAT-------------AGAGCGGGGCCGTAGGATGACGACGACGAAGAAGAT---------
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24   294716 291 -  1162296 AACTTACCAAGAGCACCTCCCAGCAATGATGTGGCTAATGAAGCAATCTCACCAAATTGTGCATTTGTGCCGGATa---ttaataaaaacagaaaggTGAATTCCTCCCAACGCATTTCGGATGATGCG---TCAACTCAAGAACAAAGT-GGAAAac-----gatgagaa------gaagaagtcagatGGACGACCGGGAGAGA---GGGC---GCAACCGAATGACTTT--GTTTAAGACGATCAAC----ACAGGCAACACAGACACACACGAAACGACGATGAAGCT--GCTGAATG----CGTTTCGGAT-------------AGAGAGGGGCC----------------------------------
i caeRem4.Crem_Contig24 I 18 C 0
s caeSp111.Scaffold630   5486443 278 + 20921866 gaCTTGCCTAGAGCACCTCCTAACAGGGATGTCGCAAGTGAAGCGATTTCTCCGAATTGTGCATTTGTTCCGGATACAGCTaatagaaagagaagagtgaATTCCTCCCAACGCATTTC------TGCG---TCAATTTAAGAATAAAGTGGTGGAAG-----AAT----AAAAAGCGATGA----AGAAG------TCGAAACGACACCGGC---GCAACCGAATGACTTT--GTTTAAGACGATCAAC----AGAGGCAACACA---------------------CAGCT--GCTGAATG----CGTTTCGGAT-------------AGAcagggggg----------------gggggagagGGGCCT---
i caeSp111.Scaffold630  I 1 I 32
s caePb3.Scfld02_254      105272 275 +   193288 AACGAACCTAGTGCACCACCAAGCAATGACGTCGCAAGTGAGGCTATTTCTCCAAACTGGGCATTTGTAcaggaaacaatgaaaattaaaacaagagcagatttttcattgaacatttt------t-ca---tgaatacaAG---CAAGAAGTCAAAG-----AAT----A------GATGA----GG---------------------TTGC---GCAGCCAACTGACTGT--TTGCAAGTCGGTTAGCGCGAAGAGTCGACACGGGAAGAC--------------GAAAC--GCTAGATGGCAACTTTCTGAATAATGTTGCCccaaaaacgaagaaa----------------cagCACGAA---------
i caePb3.Scfld02_254    I 553 C 0
s caeJap4.Scaffold54       62218 256 +   258924 AACTCACCTAGAGCTCCTCCAAGAAGGGATGTTGCCAACGACGCAATCTCCCCAAACTGAGCATAGTTACCAGCTA---TGAGACTCAAAAACCAAATGAAACCATACCAACGCATGTT----GGTTGG---TCAGTCCGAGAACTGAAGAAGTAAACGCGTAACT----A------GGTGa----gggaa---------aaagaa---aagcttTGCGTCCAATAGACTTT--GTTTAAGACGATCA-C----ACAGCAAATACG---------------------ATGAA--GCCGAATG----CGTTTCGCGT-------------CGCcgtcgcc-----------------------------------
i caeJap4.Scaffold54    C 0 C 0

a score=-3721.000000
s ce10.chrX               457583 23 + 17718866 GCTGCTGACGAGCTTCTTTCTAG
s cb4.chrX              21010033 21 - 21540570 GAGGT--ACAAGGAATTCTCCAC
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   295007 21 -  1162296 GAGGC--ACGAAGGGATCTCCAC
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_254      105547 11 +   193288 ------------GAAATATCCAA
i caePb3.Scfld02_254    C 0 I 3
s caeJap4.Scaffold54       62474 15 +   258924 gccgccgccgagGAT--------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630   5486721 32 + 20921866 I

a score=64437.000000
s ce10.chrX               457606 142 + 17718866 CCAACGAGGGAAGGGGGTGG--AGGAGAAGAGGAACGAGATATGGTCGGAGAGAAA-AAGAA-------------CGAAAGCTTCGGC---------------------AAG---------CACTGACGACGGTCAAGTTAATGCCATGGTCATCTCTTTTTCGGACTGGTTTCATCTTCATCTTCTC
s cb4.chrX              21010056 145 - 21540570 TCAAcgaggaaaagagaaga-----gagggAGGAACAAGATGTAGCCGGAGAGCGAGAAGGAGTCAGAAAAATGTCGTCAGCTTCAACGGCTGCGG------------GAAG---------TCTTGGTGACG-----GTTAATGCCATGGTCATCTCTTTTTCGGACTGGTTTC------------TT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   295029 139 -  1162296 CCAGCAGCAGAAGTCGAAGG-----GAGGGAGGAACGAGATATGGCCGGAGAGAGATGAAGA----------------CAGCTTCAACGGCGGC---------------AAG---------CCTTGGCGACGGTCAAGTTAATGCCATAGCCATCTCTTTTTCGGACTggtttcccctt----ttttc
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold630   5486753 151 + 20921866 ccgatgaggaaaa-ggagga--gaaggaggaggaacgagatatggccggagagaga-gagga-------aaacgTCGTCAGCTTCAACGGCGGCGG------------CAagcctctctctctctggtGACGGTCAAGTTAATGCCATGGTCATCTCTTTTTCGGACTGGTTTT--------------
i caeSp111.Scaffold630  I 32 C 0
s caePb3.Scfld02_254      105561 138 +   193288 CCAACAAGGAAAGCCGAGGATCGAAAACGAAGAAACGAGATATGACCAGAAAGAT----GGA-------AAACGACGTCAGTTTTGTCGGCGGCAG-------------------------CCTTAGCGACGCTCAAGTTAATGCCATAGCCGTTTCTCTTTTGAACCGGTTCT--------------
i caePb3.Scfld02_254    I 3 C 0
s caeJap4.Scaffold54       62489 149 +   258924 CCAGCGAGGGaaa------a-----aaaGGAGGAACAAGATATGGCCG---------GTGGA----------CGTCGTCAGCtttggcggcggcggcggcggtggcggcAGT---------CTCCAGCGACGGTCAAGTTAATGCCATAGTCATCCATTTTTCGGACTGGTTTAGACTTCTTCCTTTC
i caeJap4.Scaffold54    C 0 I 407

a score=11960.000000
s ce10.chrX               457748 98 + 17718866 CCCCCTCAATGCCTATGGCTTCTTCTT---GTCTACCGC---CAA-CATTTTTCTGGCGGGACACACTGAAGACTCAACGCATATTATTGT----GTTTTTAATGCTTT
s cb4.chrX              21010201 88 - 21540570 CGCCAT---------TGgcttcttcgt--cttctacCGC---TAG----TTTTC--AAAGGGCAG-ACTAAGACTCAATGCATATTTTGGCAGCAATGTTTAAAGCTTT
i cb4.chrX              C 0 I 1409
s caeRem4.Crem_Contig24   295168 87 -  1162296 cctCAC---------TGGCTTCTTCAT---TTCTACCGC---CAG-CATTTCTG--ACAGGACAGCACTGAGACTCAATGCATATTATTGT----GTTTTTAATgcttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5486904 71 + 20921866 ---------------AGGCTTCTTCATCCCCCCTACCGC---CAGGCACTCTTC----------------AGACTCAATGCATATTATTGT----GTTTTTAATGCTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      105699 70 +   193288 ---------------GGCAT------TCCCATTTAACGCAAGCAATCGTTTTTC------------TTGTGGACTCAATTAATTTTATTGC----G-TTTTAATGTTT-
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       62638 407 +   258924 I

a score=3200.000000
s ce10.chrX               457846 13 + 17718866 TTAGTTTTAAAAA
s caeRem4.Crem_Contig24   295255 13 -  1162296 ttagttttcaata
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5486975 13 + 20921866 GTAGTTTTCGAGA
i caeSp111.Scaffold630  C 0 I 1438
s caePb3.Scfld02_254      105769 12 +   193288 -TAGTTGCGAAAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       62638 407 +   258924 I
e cb4.chrX              21010289 1409 - 21540570 I

a score=300.000000
s ce10.chrX               457859 1 + 17718866 G
s caeRem4.Crem_Contig24   295268 1 -  1162296 g
i caeRem4.Crem_Contig24 C 0 I 1441
s caePb3.Scfld02_254      105781 1 +   193288 G
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       62638 407 +   258924 I
e cb4.chrX              21010289 1409 - 21540570 I
e caeSp111.Scaffold630   5486988 1438 + 20921866 I

a score=91.000000
s ce10.chrX               457860 1 + 17718866 A
s caePb3.Scfld02_254      105782 1 +   193288 A
i caePb3.Scfld02_254    C 0 I 1269
e caeJap4.Scaffold54       62638 407 +   258924 I
e cb4.chrX              21010289 1409 - 21540570 I
e caeSp111.Scaffold630   5486988 1438 + 20921866 I
e caeRem4.Crem_Contig24   295269 1441 -  1162296 I

a score=0.000000
s ce10.chrX               457861 2555 + 17718866  
e caePb3.Scfld02_254      105783 1269 +   193288 I
e caeJap4.Scaffold54       62638  407 +   258924 I
e cb4.chrX              21010289 1409 - 21540570 I
e caeSp111.Scaffold630   5486988 1438 + 20921866 I
e caeRem4.Crem_Contig24   295269 1441 -  1162296 I

a score=873.000000
s ce10.chrX               460416 3 + 17718866 ACC
s caeRem4.Crem_Contig24   296710 3 -  1162296 ACC
i caeRem4.Crem_Contig24 I 1441 C 0
s caeJap4.Scaffold54       63045 3 +   258924 ACC
i caeJap4.Scaffold54    I 407 C 0
e caePb3.Scfld02_254      105783 1269 +   193288 I
e cb4.chrX              21010289 1409 - 21540570 I
e caeSp111.Scaffold630   5486988 1438 + 20921866 I

a score=-512.000000
s ce10.chrX               460419 4 + 17718866 AAAA-
s cb4.chrX              21011698 4 - 21540570 aaaa-
i cb4.chrX              I 1409 C 0
s caeRem4.Crem_Contig24   296713 4 -  1162296 TAAC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       63048 4 +   258924 -AAAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      105783 1269 +   193288 I
e caeSp111.Scaffold630   5486988 1438 + 20921866 I

a score=5834.000000
s ce10.chrX               460423 23 + 17718866 ACTTCCAACTCATCA----------ACGCTTG-T-
s cb4.chrX              21011702 28 - 21540570 acgtCCAACTCATCAAGTGTA----AGGCCTG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   296717 32 -  1162296 ACTTCCAACTCATCAAGTCTCTCCTAGGCCTG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5488426 23 + 20921866 ACTTCCAACTCATCA----------AGGCCTGT--
i caeSp111.Scaffold630  I 1438 C 0
s caeJap4.Scaffold54       63052 27 +   258924 ACTTCCAACTCATCT--TCTA----AGATGTG--T
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      105783 1269 +   193288 I

a score=48087.000000
s ce10.chrX               460446 310 + 17718866 TTCCAAAAGACGGCATG---TTTCCTGCGTCTCTATCTCGCACCGC-CCCTT----CATCTCTACAGGTCATGGACGTCTTCGAG-------------------TGTGTGTGTGTGTGTGAGTGTCTTA---TACATTCTATCCAAT---CCTTCTTCC---------CCATTTCTTTCTTGTAGACGTGGAACT----TGACGCGTCGTTCTCTT------TTTGGTG------------------------------------TTCTCATTAGTTGACTTTAT---------------ATTTGCAGGTA--ATGTGGCGGCTGGTCGTCGCGTGGCTCCTGATTGGAGCACTTGATGCTGTCGATAGACAGAATTTTAAAACTTGCGAACAGTCGGGATTCTGCAAGTGAGTT
s cb4.chrX              21011730 335 - 21540570 TTCTGATCTGCAGTACTCG-CATTCTGCGCCTCTT-TGTGTACCGC-CCATT----TATCGT--CAGGTCATGGACGTCTTCTCGCTAGATGTACATGCATTTATGTCTTCTCTCGTCAATGTGTCTTA----------TATCCGCG---CGTTTCTCC---------------CCTGTATGTACACGTGTAGCT---ATGTTGGTTCatttattt------tcttgaaaaattaattgcattc---------------------ttctcttttttgtgcATTGACAAG-----------TTTTGCAGGTA--ATGTGGCGACTGCTAGTCGTATGTCTACTATTGGGGACGCTGGAAGCCGTGGACCggcaaaacttcaaaacgtGCGATCAATCGGGTTTTTGCAAGTAAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   296749 380 -  1162296 TTCCGAAAGACAGTACGCATCATGCTGCGTCTCCTGTACGTACCCCGCCCCC----TATCTT--CAGGTCATGGACATCTTCTCGCTAGATGTATATACATTTATGTCTTCTCTCGTCTTTCTGTCTT-----------CATCCgcatttcttttctcc---------------ttt-tatgTCGACGTGGAACTTTAACgttgttttgtgatttttataaCTATTGTTTATTTAATTCAAATcaactttcaataatttttccgatccttttttcttcacaataaCTTGAAATCAGATGTTTTTACAGATT--ATGTGGCGACTTATAGTCGCATGCCTCTTATTTGGAACGCTGGGTGCTGTTGACCGGCAGAACTTTAAAACTTGCGATCAATCCGGTTTCTGCAAGTAAGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5488449 273 + 20921866 -TCGGA---------------ATGCTGCGTCTCCGACGCGTACCGC-CTATC----CATCGT--CAGGTCATGGACATCCTCTCGCTTGC--------------------CGTATATGTCTCACTCTTC------ATCTCATCCacc---t-tttctta---------------tttttatgtCGACGTGGAACT---------GTT--TACAATG------TCTTATGTAT-----------------------AATG------TTCTT-----------------GG-----------AGTTTCAGGTATGGCGTGGCGACTTTTAGTTGCGTGTTTCTTATTTGGAAGTTTGGATGCCGTGGATCggcaaaatttcaaaacttgtgAGCAGTCGGGATTTTGCAAGTGAGTT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_254      107052 340 +   193288 TTCCGACAGTCATTCCC---tgttctgcgtctctcatgaGTACCGC-CCATC----TATCAC--CAGGTCATGGTCATTCTTCCGCATCCTTCAGGCGATGTTATGTCTTCTAAGATGTATCCCTCTTA------CTCTCTTCCACT---TCCTTCTTGGGTTTCTATTCATCCTTGTTCTGCTTTCGtgtaatt---------tttgatgagatt------taTTAAGTATCT-GTGAAACTCAATTAATAAGAATTG------TTC--------------------------------ACTTTCAGGTA--ATGTGGCGAATATTCTTCGCTCtactttttctgcaaacatTGGAAGCTGTCGATCGACAGAACTTCAAAACATGTGAACAATCTGGGTTTTGCAAGTCAGTT
i caePb3.Scfld02_254    I 1269 I 208
s caeJap4.Scaffold54       63079 295 +   258924 -TCCGA-TGACAATcct---gtctctgcgtctc---catgcGCCGC-CCATTGCAGTTTGGA--CAGGTCATGGGCATTTTCTGG----------------tagtgtatgtatgtatgcgtTTGGCCGGCCATTCATCGCAACTTCT---TATACCTTC---------------TTATTATGAATGTGT----TT---------TGACACACGATT------TACTCAAACTCAATTTGACATT---------------------TGC--------------------------------AGGCCCAGGCA--ATGTGGCGGATTGCAATCGCATTCCTCCTTTTTGGTAGCTTGTGTGCTGTCGATCGGCAAAACTTCAAAACATGTCAACAATCTGGGTTTTGCAAGTAGGT-
i caeJap4.Scaffold54    C 0 C 0

a score=-4666.000000
s ce10.chrX               460756 22 + 17718866 GTTACAAAAAATTACATTATTT-
s cb4.chrX              21012065 20 - 21540570 -TTCTTGAAGTTTGCGTTTTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   297129  3 -  1162296 -CTT-------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5488723 21 + 20921866 ATCCTAgaaaatttcgttttt--
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold54       63374 21 +   258924 -TTACAGAAACTGGGATTGAT-T
i caeJap4.Scaffold54    C 0 I 901
e caePb3.Scfld02_254      107392 208 +   193288 I

a score=-46531.000000
s ce10.chrX               460778 532 + 17718866  
s cb4.chrX              21012085 215 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   297132 279 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5488744 257 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      107392 208 +   193288 I
e caeJap4.Scaffold54       63395 901 +   258924 I

a score=910.000000
s ce10.chrX               461310 1 + 17718866 T
s cb4.chrX              21012300 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   297411 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5489001 1 + 20921866 T
i caeSp111.Scaffold630  C 0 I 2
s caeJap4.Scaffold54       64296 1 +   258924 T
i caeJap4.Scaffold54    I 901 C 0
e caePb3.Scfld02_254      107392 208 +   193288 I

a score=179907.000000
s ce10.chrX               461311 244 + 17718866 TCTAGGCGTCATCGAGCGGTCACATCGCCAACTGGATATGAAGTTGTTGGTGATTCCGTGAAAACAAACGAAACTGGACTTCATGCTCTTATCAAGAACAAGGATACGACATTGCGGTTGAGCATTGTTGCTTTGAAGGATTCAACGGTCAGAGTGGTCATTGACGAGAACGATGGGGCTTTGAGAAAACGTTACCAACCATTGGAAGCTTTGGTTGACAGAGAGCCCGCGCAGCAAAAGTAAG
s cb4.chrX              21012301 244 - 21540570 TTTAGGCGCCATCGAGCGGTCACATCGCCGACTGGATATGAAGTTGTACAAGATTCTATCAACATCAACGACACTGGGCTTTACGCACTCCTCAAAAACAAAGATACTACACTGAAACTAACTATTGTGACATTGCAAGACTCCACAGTTCGAGTGCTCATTGATGAGAACGAAGCAGCGCTTAGAAAACGATACCAGCCTTTGGAAGCATTAGTTGAAAGAGAGCCAAAACAGCAAAAGTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   297412 244 -  1162296 TCTAGGCGTCATCGAGCGGTCACTTCGCCAACTGGATATGAAGTGGTTAGTGATTCTATCAAAATCAACGATACTGGACTTCATGCTCTTATCAAAAACAAAGATACCACTTTGAAAGTGACTATTGTGACACTCCAAGATTCTACTGTCCGAGTTGTCATTGATGAGAATGAGGGAGCACTAAAGAACCGTTATCAGCCACTGGAGGCGTTGGTTAATAGAGAACCAAAACAACAAAAGTAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5489004 244 + 20921866 TCTAGGCGTCATCGAGCGGTCACATCGCCAACTGGATATGAAGTGGTCACCGACTCTATCAAAATTAACGACACCGGACTGCACGCTCTCCTTAAAAACAAAGATACCACACTGAAATTGAGCATTGTTACATTGAAAGATTCTACTGTGAGAGTCGTGATTGATGAGAATGAAGGGGCTTTGAGGAAACGTTATCAGCCATTGGAAGCTTTGGTTTCTACAGAACCAACTCAGCAAAAGTAAG
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_254      107600 244 +   193288 TTCAGGCGTCATCGAAAAGCTGTATTGCCTACTGGTTATGAAGTAGTAACTGATTCGATTAGTATCAACGGTACCGGACTTGATGCATTGATCAAAAGTAAAGACAGTACGTTGAAACTGTCAATCGTCTCTCTCAAGGACTCGACTGTTAGAATTcttattgatgaaaatggagagtCGTTGAGAAAAAGATATCAGCCTTTGGACGCGTTGGTTGACAAAGAACCAGAACAACAAAAGTGAG
i caePb3.Scfld02_254    I 208 I 83
s caeJap4.Scaffold54       64297 244 +   258924 TACAGGCGTCACCGAGAAATCTCAAAACCGACGGGGTACGAAGTAATTAGCGATTCGATCAAAGTAAACGACACCGGATTAACGGCTCTcataaaaaacaaagaaacaaCTTTGACTATCAGCATTGTCAGTCTGAAAGATTCCACGGTTCGGGTAGTTATTGATGAAAATGAAGGAGCTTTGAGAAAAAGATATCAGCCACTAGATGCATTGACAGAAAAAGAACCGGCTCAAACTAAGTGAG
i caeJap4.Scaffold54    C 0 I 1

a score=1092.000000
s ce10.chrX               461555 2 + 17718866 AA
s caeRem4.Crem_Contig24   297656 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 38
s caeSp111.Scaffold630   5489248 2 + 20921866 AA
i caeSp111.Scaffold630  C 0 I 203
s caeJap4.Scaffold54       64542 2 +   258924 Aa
i caeJap4.Scaffold54    I 1 C 0
e caePb3.Scfld02_254      107844 83 +   193288 I
e cb4.chrX              21012545 0 - 21540570 C

a score=91.000000
s ce10.chrX               461557 1 + 17718866 T
s caeJap4.Scaffold54       64544 1 +   258924 t
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      107844 83 +   193288 I
e cb4.chrX              21012545 0 - 21540570 C
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=-119.000000
s ce10.chrX               461558 24 + 17718866 ATTTGCGTTGTGATAATCCAAAAA
s cb4.chrX              21012545 16 - 21540570 --------CCTggtattttaaaat
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54       64545 24 +   258924 gcatttttaatgaaatttttagaa
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      107844 83 +   193288 I
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=1.000000
s ce10.chrX               461582 24 + 17718866 AGTTTGCCAGTTTTGTTACACCAA
s cb4.chrX              21012561 18 - 21540570 tatttgac------gttagaataa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      107844 83 +   193288 I
e caeJap4.Scaffold54       64569  0 +   258924 C
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=0.000000
s ce10.chrX               461606 461 + 17718866 CTACTCTATGTCATGAAAAAAAGTAAAAGTAAAGATTGTCCGTTTGGTTCAAGATTTAACAGGGTTACTGGTAGCGTTTATATCTCTTCtagggctcccatgaggtcgccgcaaaggcgcctccgccggccttagcggtcgccgcgccggactcacggcgtcatccacgccgcatgtatagtgaggcgcgtaaccgcgaacacacatagcggcgcgcggcgtcggcgtgaggccggcgtgaggcccgcatttcgcgcctcactcagctgggagccctaatctcttctagtcttaatttaggccgtaccgggactagcggtatgggcgatttacctttcgtgaaccaaattcactacccactttccgagccggctgagcctttggggtgaggcgggattgaactcgcgacctcttggatgacagagctacaccactaccatttagccacccgtgccccTTAT
e caePb3.Scfld02_254      107844  83 +   193288 I
e caeJap4.Scaffold54       64569   0 +   258924 C
e cb4.chrX              21012579   0 - 21540570 C
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658  38 -  1162296 I

a score=455.000000
s ce10.chrX               462067 5 + 17718866 AATTT
s caeJap4.Scaffold54       64569 5 +   258924 aattt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      107844 83 +   193288 I
e cb4.chrX              21012579 0 - 21540570 C
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=-1107.000000
s ce10.chrX               462072 1 + 17718866 -T
s cb4.chrX              21012579 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254      107927 1 +   193288 -t
i caePb3.Scfld02_254    I 83 C 0
s caeJap4.Scaffold54       64574 1 +   258924 a-
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630   5489250 203 + 20921866 I
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=1820.000000
s ce10.chrX               462073 2 + 17718866 TT
s cb4.chrX              21012580 2 - 21540570 tt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5489453 2 + 20921866 TT
i caeSp111.Scaffold630  I 203 C 0
s caePb3.Scfld02_254      107928 2 +   193288 tt
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       64575 2 +   258924 tt
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   297658 38 -  1162296 I

a score=275226.000000
s ce10.chrX               462075 374 + 17718866 TTCAGAGTTAAGAAAATAAAAGAAGAAGCCACTGCGACCAAAGTCTTGACAACTGACGGAAACCGCATAGTCCTCCAACATAAACCTTTCCGCATCGACTTTTATGTTAAGGACAAGATTGTCTCCTCTATCAATGCCAAAGAAACTCTTCACTTTGAAGCTTTCAAAAAGAAAGTTCTGTTATCAGACAGAGAAAAAGGGTTCTGGGAGGAGACCTTCAAAGAGATCAAGGATACCAAGCCACATGGGTCCTCTTCTGTCGGGGTTGATATTGCTTTTGTTGGTGCTAAACATGTATTTGGTATCCCGGAACATGCAGAGAGCTATTCCTTGAGAGACACAAGGTAAGTGTT-----------------GAAAATTTTGATAATTTGAAC
s cb4.chrX              21012582 341 - 21540570 ttcagggttAAGAAAACCAAAGAAGAAGCCTCTGTCACAAAAATTCTGACCACAGACGGGAATCGTGTTGTGCTTCAACACAAACCTTTCCGAGTGGATTTTTATGTGAAAGACAAAATTGTCTCATCTATAAACGCCAAGGAAACgcttcattttgaagttttcaagaaaaaggtTTTATTGACAGATAGAGAAAAAGGATTCTGGGAGGAGACATGGAAAGATATCAAGGACACAAAACCACACGGATCGTCATCAGTCGGTGTGGATATTGCTTTTGTGGGAGCTAAGCacgtttttggaattccggaaCATGCTGAAAGCTATTCTCTGAGAGACAC--------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   297696 371 -  1162296 ttcaggGTGaaaaaaaCCAAGGAAGAAGCCACCACCACCAAGATTCTCACCACTGACGGAAACCGAGTAGTTCTTCAACACAAACCATTCCGTGTAGACTTCTACGTAAAGGATAAGATTGTATCATCTATCAATGCTAAAGAAACTCTTCACTTTGAAGCTTTCAAGAAAAAGGTGTTGTTGACCGACAGAGAGAAGGGATTCTGGGAGGAAACATGGAAGGACATTAAGGACACCAAACCACATGGATCTTCTTCTGTCGGAGTCGATATTGCATTTGTTGGAGCTAAGCATGTGTTTGGTATACCAGAACATGCTGAAAGTTATTCATTGAGAGATACCAGGTAAGT--------------------GAACGTTTCAATAAAATGCAC
i caeRem4.Crem_Contig24 I 38 I 435
s caeSp111.Scaffold630   5489455 350 + 20921866 TTTAGGGTTAAGAAAACCAAGGAAGAAGCAACCGCTACAAAGATCCTGACTACCGACGGTAACCGCGTTGTTCTTCAACACAAGCCCTTCCGAGTTGATTTCTACGTTAAAGACAAAATCGTTTCATCTATTAATGCTAAAGAAACATTGCATTTCGAGGCTTTCAAGAAGAAGGTCTTGTTAtcagatagagaaaaaggattctGGGAGGAGACTTTCAAAGAGATCAAGGACACAAAGCCCCATGGAAGCTCTTCTGTGGGAGTTGATATCGCTTTCGTTGGGGCTAAACACTTGTTTGGTATCCCTGAGCACGCGGAGAGTTATTCTCTAAGAGATACAAGGTAAGT-----------------------------------------
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_254      107930 367 +   193288 ttcagatggaaaaaaacgaaacaagaTGCAACTGCAACTAAACTTCTCACAACTGATGGAAATCGGATAGTCCTCCATTATAAACCTTTCCGTGTTGATTTCTTTGTTAAAGACAAAATTGTTTCTTCCATCAATTCCAAAGAAAGCTTGTTTTTCGAGAACTTCAAGAAGAAAGTTTTACTTTCGGATagagaaaatggattttgGGAGGAAACTTTCAAAGACATCAAAGATACTAAACCATACGGTTCATCGTCTGTTGGAGTTGATATTGCTTTTGTTGGTGCAAAACATTTGTTTGGAATACCAGAGCACGCTGAGAGTTACTCATTGAGAGACACGaagtaagt--------------------tttcatt----tactattttc
i caePb3.Scfld02_254    C 0 I 44
s caeJap4.Scaffold54       64577 386 +   258924 cttagattcaaaaaatcaaaattggaAGAGGGATCTACAAAACTCTTGACTGGTGACGGAAATCGTATAGTTCTTCAACACAATCCATTTAGAGTGGATTTTTATGTTAAGGATAAAATTGTGTCCTCTATCAATTCCAAAGAGACCCTTCACTTTGAAGCCTTCAAAAAGAAAGTTCTGCTTACGGACAGAGAAAAGGGATTTTGGGAGGAAACGTTTAAAGATATCAAGGACACAAAACCTCATGGCTCATCTTCTGTCGGTGTGGACATTGCATTTGTTGgggcaaaaaatttgtttggaATCCCAGAGCATGCCGAAGGATACTCCTTGAGAGATACTAGGTAACATATAACAGCTAGAAAACAAAACTCATTCTGATAAAT-----
i caeJap4.Scaffold54    C 0 C 0

a score=511849.000000
s ce10.chrX               462449 581 + 17718866  
s cb4.chrX              21012923 571 - 21540570  
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig24   298502 581 -  1162296  
i caeRem4.Crem_Contig24 I 435 I 49
s caeSp111.Scaffold630   5489829 580 + 20921866  
i caeSp111.Scaffold630  I 24 I 48
s caePb3.Scfld02_254      108341 591 +   193288  
i caePb3.Scfld02_254    I 44 I 130
s caeJap4.Scaffold54       64963 626 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=79823.000000
s ce10.chrX               463030 77 + 17718866 CGCAAGCTAGTTACAATCGTTGACCCACACATCAAAAAGGATTCCAAGTATTACATTTACAAGGAGGCCAAGAAAAA
s cb4.chrX              21013538 77 - 21540570 CGTAAACTCATCACAATTGTTGACCCACATATCAAGAAGGACTCCAAATACTACATTTACAAGGAGGCGAAGAAAAA
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig24   299132 77 -  1162296 cgtaAACTTGTCACTATTGTTGACCCACATATCAAGAAAGATTCAAAGTACTACATCTACAAAGAAGctaagaaaaa
i caeRem4.Crem_Contig24 I 49 C 0
s caeSp111.Scaffold630   5490457 77 + 20921866 cgcaAACTTGTCACAATTGTCGATCCACATATCAAAAAGGATTCGAAATATTATATTTATAAAGAAGCCAAGAAGAA
i caeSp111.Scaffold630  I 48 C 0
s caePb3.Scfld02_254      109062 77 +   193288 CGTAAGCTAGTAACAATTGTCGATCCACACATCAAGAAAGATTCGAAATATTACATCTACAAAGAAGCcaagaaaaa
i caePb3.Scfld02_254    I 130 C 0
s caeJap4.Scaffold54       65589 77 +   258924 CGTAAACTGGTGACTATTGTGGACCCACATATCAAAAAAGATGCAAAGTACTACATTTACAAAGAAGCCAAGAAGAA
i caeJap4.Scaffold54    C 0 I 1

a score=-1921.000000
s ce10.chrX               463107 10 + 17718866 TGTGAG-------TTTA--
s cb4.chrX              21013615 10 - 21540570 TGTAAG-------CT--GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299209 17 -  1162296 tgtgagaaagaaATT--GC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5490534  8 + 20921866 CGTAAG-------TT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      109139 10 +   193288 tgtgag-------ttcA--
i caePb3.Scfld02_254    C 0 I 319
e caeJap4.Scaffold54       65666  1 +   258924 I

a score=-2673.000000
s ce10.chrX               463117 17 + 17718866 TTTATTTTGGGAGTT-TC-
s cb4.chrX              21013625  3 - 21540570 ----------------TCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299226 19 -  1162296 TCAATTGTTAAAGtcgtca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5490542  7 + 20921866 ----------GAGTT-TC-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      109149 319 +   193288 I
e caeJap4.Scaffold54       65666  1 +   258924 I

a score=-1628.000000
s ce10.chrX               463134 22 + 17718866 TAGATGTTAG-----CTCGGAGATCAT
s cb4.chrX              21013628 27 - 21540570 TTTTCTTTATTCCCACCTgaaaaagat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299245 10 -  1162296 tattttttat-----------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      109149 319 +   193288 I
e caeJap4.Scaffold54       65666  1 +   258924 I
e caeSp111.Scaffold630   5490549  0 + 20921866 C

a score=91.000000
s ce10.chrX               463156 1 + 17718866 T
s caeRem4.Crem_Contig24   299255 1 -  1162296 t
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      109149 319 +   193288 I
e caeJap4.Scaffold54       65666 1 +   258924 I
e cb4.chrX              21013655 0 - 21540570 C
e caeSp111.Scaffold630   5490549 0 + 20921866 C

a score=0.000000
s ce10.chrX               463157 858 + 17718866  
e caePb3.Scfld02_254      109149 319 +   193288 I
e caeJap4.Scaffold54       65666   1 +   258924 I
e cb4.chrX              21013655   0 - 21540570 C
e caeSp111.Scaffold630   5490549   0 + 20921866 C
e caeRem4.Crem_Contig24   299256   0 -  1162296 C

a score=171.000000
s ce10.chrX               464015 32 + 17718866 TACATATTACTTAAATATTTTTAAACTGAACA
s caeSp111.Scaffold630   5490549 27 + 20921866 TACTTACTTCctgaatcttctttttct-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      109149 319 +   193288 I
e caeJap4.Scaffold54       65666  1 +   258924 I
e cb4.chrX              21013655  0 - 21540570 C
e caeRem4.Crem_Contig24   299256  0 -  1162296 C

a score=3234.000000
s ce10.chrX               464047 5 + 17718866 TTCAG
s cb4.chrX              21013655 5 - 21540570 ttcag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299256 5 -  1162296 ttcag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5490576 4 + 20921866 -ctag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      109468 5 +   193288 ttcag
i caePb3.Scfld02_254    I 319 C 0
e caeJap4.Scaffold54       65666 1 +   258924 I

a score=532700.000000
s ce10.chrX               464052 749 + 17718866  
s cb4.chrX              21013660 678 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299261 665 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5490580 821 + 20921866  
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_254      109473 669 +   193288  
i caePb3.Scfld02_254    C 0 I 5
s caeJap4.Scaffold54       65667 695 +   258924  
i caeJap4.Scaffold54    I 1 C 0

a score=-1644.000000
s ce10.chrX               464801 20 + 17718866 TAAAGAATCTTTTTTCTTCT
s caeRem4.Crem_Contig24   299926  9 -  1162296 taaaaactc-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5491409 11 + 20921866 TAGACACTCTT---------
i caeSp111.Scaffold630  I 8 C 0
s caeJap4.Scaffold54       66362 11 +   258924 ---------tttttctttct
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      110142  5 +   193288 I
e cb4.chrX              21014338  0 - 21540570 C

a score=-6758.000000
s ce10.chrX               464821 59 + 17718866 GAATCGAAATGTGCAAAGAGATAGAAGAAATACTACAATTAATGAGCGAAAAAATACTA
s caeRem4.Crem_Contig24   299935 10 -  1162296 ----------------------aaaactaatA---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5491420 21 + 20921866 -------------------GGTATAAAAAACATTGgagtt-------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      110147 21 +   193288 ----------------------atgaattaCGAAGGAATC----------------Cta
i caePb3.Scfld02_254    I 5 C 0
e caeJap4.Scaffold54       66373  0 +   258924 C
e cb4.chrX              21014338  0 - 21540570 C

a score=-3889.000000
s ce10.chrX               464880 70 + 17718866 CAACACTGTGGTGAGAAGTCCAACCACAACCTGCGTGATATTGCAACCTACGAAACTAAAGCTTAAACTA
s caeRem4.Crem_Contig24   299945 21 -  1162296 ---------------CAGTCTCAACAAAA----------------------------------TAAACTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5491441 11 + 20921866 ------------------tcttg-----------------------------------------aaattt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      110168  0 +   193288 C
e caeJap4.Scaffold54       66373  0 +   258924 C
e cb4.chrX              21014338  0 - 21540570 C

a score=-3707.000000
s ce10.chrX               464950 54 + 17718866 GTCATGATAACTTTTGATCTTGAATAGCTAAGAGTAGAGTGTGTATTTTAGTAG
s cb4.chrX              21014338  7 - 21540570 -----------------------gttataa------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5491452 25 + 20921866 -----------------tctttggTAATCAAAACTAAAACAT------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      110168  0 +   193288 C
e caeJap4.Scaffold54       66373  0 +   258924 C
e caeRem4.Crem_Contig24   299966  0 -  1162296 C

a score=-6224.000000
s ce10.chrX               465004 44 + 17718866 ATATATGTATTTTTAGTAGATATACAAAACAAGTAATTTTATGA
s cb4.chrX              21014345 17 - 21540570 ---------------------attcaaa----ataattgagt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299966  7 -  1162296 ---------------------ATTGGAA----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      110168 10 +   193288 --------------------------------atataattat--
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       66373  0 +   258924 C
e caeSp111.Scaffold630   5491477  0 + 20921866 C

a score=307783.000000
s ce10.chrX               465048 366 + 17718866 TTTCAGAACACAACTGAAGCTATTCGCAATGCTATAAAAACCAGATACGCATTCCTCCCATACTGGTACACTTTGTTCTATGAGCATGCTAAAACCGGAAAACCAGTGATGAGACCATTCTGGATGGAATTCATTGAAGATGAGCCTTCATGGGATGAAGATAGACAATGGATGGTTGGAAACGGTCTTCTAGTGAAGCCAGTTCTTGAAGAAAAGGTCAAAGAGCTCTCAATCTACTTGCCGGGAAAACGTCAAGTA---------------------------------------------------------------------------TGGTATGATTGGGAGACCCACAAGGCACGTCCATCGCCAGGAGCAGTCCAAATTCCCGCAGAGTTAAACACAATCGGTCTTTACCACAGAGGAGGT------------AATATAGAT-----------------------TTT
s cb4.chrX              21014362 384 - 21540570 tttCAGAACACAACTGACGCTATTCGTAATGCTATCAAGACTCGTTACGCCTTCATCCCATACTGGTACACATTGTTCTATGAGCACGCGAAAACCGGAAAGCCAGTAATGAGACCATTCTGGATGGAATTCATTGAAGACGAGCCATCATGGGATGAAGATAGACAATGGATGGTTGGAAATGGACTTCTAGTCAAACCAGTTCTTGAAGAAAAGGCTAAAGAGCTTTCCATTTATTTACCAGGAAAGAGACAAGTG---------------------------------------------------------------------------TGGTACGATTGGGAAACTCACAAAGCCCGTCCATCTCCTGGAGCTGTTCAGATTCCAGCTGAGCTCAACACAATTGGACTTTATCACAGAGGAGGtgagctttttttcaatttttttcagtct-----------------ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   299973 367 -  1162296 -TTCAGAACACCACATCTGCTATCCGAAACGCGATCAAGACTCGTTATGCATTCCTTCCTTATTGGTACACTCTGTTCTATGAGCACGCAAAGACCGGAAAGCCAGTTATGAGACCATTCTGGATGGAATTCATTGAAGACGAGCCATCATGGGATGAAGATAGACAATGGATGGTTGGAAGTGGTCTCCTTGTAAAACCAGTGCTTGAGGAGAAGGTTAAGGAGTTATCGATTTATTTGCCAGGAAAGAGACAGGTC---------------------------------------------------------------------------TGGTACGACTGGCATACTCATAAAGCTAGGCCATCACCAGGAGCGGTTCAAATTCCAGCTGAACTCAACACAATTGGACTTTATCAAAGAGGAGGTGA---------CAATTTAAAATA------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5491477 360 + 20921866 TTCCAGAACACTACTGACGCTATTCGCACTGCCATCAAAACACGTTACGCTTTCCTTCCTTACTGGTACACTCTGTTCTATGAGCACGCAAAGACCGGAAAGCCAGTTATGAGACCATTTTGGTTAGAGTTCATTGAGGACGAGCCTTCATGGGATGAAGACCGACAATGGATGGTCGGAAGTGGCCTTCTGGTGAAACCAGTACTCGAGGAGAAACTCAAAGAGCTCTCGATCTACTTGCCAGGAAAGAGACAGGTC---------------------------------------------------------------------------TGGTATGATTGGGAGACTCACAAAGCACGTCCATCTCCTGGAGCTGTGCAAATTCCAGCTGAGCTGAATACTATTGGACTTTATCATAGAGGAGGttgg-----------------------------------------ttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      110178 401 +   193288 tttcagaacactaCTGATGCTATCCGCACTGCTGTTAAAAATCGTTATTCTTTCCTGCCTTATTGGTACACATTATTCTATGAGCATGCTAAAACCGGCAAGCCAGTCATGAGGCCATTTTGGGTCGAGTTCATTGATGATGAGGCTTCTTGGGATGAGGATAGACAGTGGATGGTTGGTAGCGGTCTGCTTGTCAAACCAGTTCTCGAAGAGAAGATCAAGGAACTCTCTATTTATTTGCCTGGAAAAAGACAAGTA---------------------------------------------------------------------------TGGTATGATTGGAACAATCATAAAGCACGTCCGTCACCTGGAGCTGTTCAAATTCCGGTTGATATTAACACGATCGGACTTTATCATAGAGGAGGTTTGTATTTTCACAATCCTGAACATCTTCAACATGAGAATGCCTATTG
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       66373 441 +   258924 tttgagAACACCACCGACGCTATCCGAAATGCAATCAAGACCCGCTATGCATTCTTCCCATATTGGTACACACTGTTCTATGAACATTCCAAGACTGGAAAGCCGGTTATGAGACCATTCTGGCTGGAGTTTGTTGAAGATGAGTCATCTTGGGATGAGGACAGACAGTGGATGGTTGGAAGTGGGCTTCTGGTGAAACCAGTTCTGGAAGCTGATTCTAAGGAACTGTCGATTTACCTACCGGGAAAACGTCAGGTATGTTTCtagagcaatttttttttcatttttaaatacaGTGTTGCATCAAttgaattatattttttgctttaGGTTTGGTATGACTGGGAGACACACAAAGCTCGCCCATCGCCAGGAGCTGTTCAAATACCAGTTGGCCTGAACACAATTGGACTCTACCATAGAGGAGGTAaaatgattttc-----------------------------------
i caeJap4.Scaffold54    C 0 I 689

a score=170805.000000
s ce10.chrX               465414 236 + 17718866 AAAATTGC------ATTTCTCAG----------CTAAAGTCTA----------------------------------AGAAACCAC-CCTATTTCCAGGTACAATCATTCCAAAGTTGTCAGAAGTGAAACTGACTACCAAGGAGAACCACGAGCAACCAATTATTCTCTACATTGCTGTCAACCAGAAAGGAGATTTCGCCAATGGAACAATTTATTTGGATGATGGAGAGTCGTATGCTTACGAGAAGGGAGACTTCGCATATTGGGGATTCACTTTCAAGAGGT
s cb4.chrX              21014746 226 - 21540570 aCAACTTC------TTCACCCTC----------CCTaatcata---------------------------------------------tatttttcaggaaccATCATTCCAAAATTGTCGGAAGTGAAACTGACCACAAAAGAGAATCACGAGCAACCAATCACTCTCTACATCGCTGTCAACCAGAAAGGAGATTTTGCCAACGGAACAATTTATTTAGATGATGGAGAGTCATATTCCTACGAGAAGGGAGATTACGCTTACTGGGGATTCACTTTCAAGAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   300340 223 -  1162296 ATAGTTGT------CTAATTTTA----------TGTAATTGTG------------------------------------------------TTTCCAGGAACCATCATTCCAAAACTATCGGAAGTCAAACTGACCACCAAAGACAACCACGAACAACCAATCACTCTCTACATTGCTGTCAACCAAAAGGGAGACTTCGCCAACGGAACCATTTATTTAGATGATGGAGAGTCTTATTCCTATGAGAAAGGAGACTTCGCTTATTGGGGATTCACGTTCAAAAGGT
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold630   5491837 230 + 20921866 tcaatttt------ttgtcccCG----------CGCAAAagaa----------------ttct-------------------------caatttccagGAACTATTATTCCAAAGTTGTCGGAAGTGAAATTGACCACCAAGGACAACCACGAACAGCCGATTACTCTCTACATTGCCGTGAACCAGAAGGGGGACTTCGCTAATGGAACCATTTATTTGGATGATGGAGAGTCGTATGCCTACGAGAAAGGAGACTTTGCCTACTGGGGATTCACTTTTAAGAGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      110579 286 +   193288 TCAATTTGTGTCTATTGTCACTGAGATTCTACTCGGAATAGAATGAttgaaccacttttttctgataatcgTTTACTTAACCCCGT-ACAATTTACAGGCACCATCATTCCCAAGTTATCAGAAGTGAAGCTAACTACTAAAGACAACCAAAATCAACCAATCACACTTTACATTGCTGTTAATCAGAAGGGAGACCACGCTAATGGAACAATTTATTTAGATGATGGAGAGTCTTATGGTTACGAAAATGGAGAATATGCTTATTGGGGATTCACATTCAAACGGT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       67503 237 +   258924 AAAATATC------GTTTCTCTG----------CCTGtttttt----------------------------------tGACTCAACTTTTACTTTCAGGAACAATAATTCCAAAGCTATCTGAAGTACAACTAACCACCAAGGATAATCATGAAAAACCAATCGTCCTTTACATTGCTGTGAACCAAAAAGGCGATCATGCTAATGGAACGATTTATTTGGATGATGGAGAGTCGTATGCATATGAAAATGGAGATTATGCATATTGGGGTTTTACATTCAAAAAGT
i caeJap4.Scaffold54    I 689 C 0

a score=1189.000000
s ce10.chrX               465650 4 + 17718866 AAGT
s cb4.chrX              21014972 4 - 21540570 AATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5492067 4 + 20921866 GAGC
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_254      110865 4 +   193288 AAGT
i caePb3.Scfld02_254    C 0 I 142
s caeJap4.Scaffold54       67740 4 +   258924 AAGG
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   300563 15 -  1162296 I

a score=-1685.000000
s ce10.chrX               465654 4 + 17718866 --AGAA
s cb4.chrX              21014976 3 - 21540570 ---GAA
i cb4.chrX              C 0 I 25
s caeSp111.Scaffold630   5492074 4 + 20921866 --CGGA
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold54       67744 4 +   258924 ACAG--
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      110869 142 +   193288 I
e caeRem4.Crem_Contig24   300563 15 -  1162296 I

a score=273.000000
s ce10.chrX               465658 1 + 17718866 A
s caeSp111.Scaffold630   5492078 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       67748 1 +   258924 A
i caeJap4.Scaffold54    C 0 I 29
e caePb3.Scfld02_254      110869 142 +   193288 I
e cb4.chrX              21014979 25 - 21540570 I
e caeRem4.Crem_Contig24   300563 15 -  1162296 I

a score=455.000000
s ce10.chrX               465659 5 + 17718866 TAATT
s caeSp111.Scaffold630   5492079 5 + 20921866 TAATT
i caeSp111.Scaffold630  C 0 I 15
e caePb3.Scfld02_254      110869 142 +   193288 I
e caeJap4.Scaffold54       67749 29 +   258924 I
e cb4.chrX              21014979 25 - 21540570 I
e caeRem4.Crem_Contig24   300563 15 -  1162296 I

a score=0.000000
s ce10.chrX               465664 842 + 17718866  
e caePb3.Scfld02_254      110869 142 +   193288 I
e caeJap4.Scaffold54       67749  29 +   258924 I
e cb4.chrX              21014979  25 - 21540570 I
e caeSp111.Scaffold630   5492084  15 + 20921866 I
e caeRem4.Crem_Contig24   300563  15 -  1162296 I

a score=63.000000
s ce10.chrX               466506 17 + 17718866 TTATTCAGT-TTATTCTA
s caeRem4.Crem_Contig24   300578 18 -  1162296 TTTTTCAGTATTATAGAT
i caeRem4.Crem_Contig24 I 15 C 0
e caePb3.Scfld02_254      110869 142 +   193288 I
e caeJap4.Scaffold54       67749 29 +   258924 I
e cb4.chrX              21014979 25 - 21540570 I
e caeSp111.Scaffold630   5492084 15 + 20921866 I

a score=273.000000
s ce10.chrX               466523 1 + 17718866 T
s cb4.chrX              21015004 1 - 21540570 T
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig24   300596 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      110869 142 +   193288 I
e caeJap4.Scaffold54       67749 29 +   258924 I
e caeSp111.Scaffold630   5492084 15 + 20921866 I

a score=864.000000
s ce10.chrX               466524 4 + 17718866 TTTG
s cb4.chrX              21015005 4 - 21540570 TTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   300597 4 -  1162296 TCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5492099 4 + 20921866 TCTT
i caeSp111.Scaffold630  I 15 C 0
s caePb3.Scfld02_254      111011 4 +   193288 tttt
i caePb3.Scfld02_254    I 142 C 0
e caeJap4.Scaffold54       67749 29 +   258924 I

a score=244461.000000
s ce10.chrX               466528 292 + 17718866 TTCCAGAGAACACGACTACTTGCACACAATCACCAACAAGAATCTTGACAAGAAGGGTAAATTTGACAGTGACGTCTACATTGACAAAATTGTCATTCGTGGTGCCAAATTCTACCCAAGAAATGCTCACATCTTCCTTGACGATTTCTCGCCAGAAGACCTTGAATTCGAGTTTAATCGTGACAATTTCTTGATGGAAATTGCTAATCCAGGAGCTTTTGTCACCAGAGAGTTCAGAATTGATATTCATTCTTAATTTATCAATT----------------AACTAGAACTTAAATAA------------TTTAAGTTT-
s cb4.chrX              21015009 285 - 21540570 TTTCAGAGAGCATGATTACCTTCACACCATCACCAACAAAAATCTCGATAAAAACGGAAAGTTCGATAGTGATGTGTACATTGATAAAATTGTTATCCGTGGAGCCAAATTCTACCCAAGAAATGCTCACATTTTCCTTGACGACTTCTCTCCCGAAGACCTTGATTTTGAGTTCAACCGCGAAAACTTTGTTATGGAAATTGCCAATCCAGGAGCATTTGTCACCAGAGAGTTCAGAATTGACCTTCATTCATAAA-------------------------GTCAAAACTAATATTAACT----------TATACCGcc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   300601 310 -  1162296 TTCCAGAGAACACGACTACTTGCACACCATCACCAACCAGAATCTTGACAAGAAGGGTAAATTTGACAGCGACGTTTACATCGACAAGATTGTTATCCGTGGCGCGAAATTCTACCCAAGAAACGCCCACATCTTCCTTGATGACTTCTCTCCAGAAGACCTCGACTTTGAGTTCAACAGAGACAACTTCGTGATGGAAATTGCTAATCCAGGAGCGTTTGTCACTAGAGAATTCAGAATCGACCTTCATTCTTAAATAAGTATATTAGGGTTCATGCCCCTGTCTCGAGTATTATTAATA----------ATTTAATCT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5492103 277 + 20921866 TTCCAGAGAACACGACTACCTTCATACTATCACTAACAAAAACCTTGATAAGAAGGGCAAGTTTGACAGCGATGTTTACATTGACAAAATTGTGATTCGTGGAGCCAAATTCTACCCGAGAAACGCTCATATCTTCCTTGATGATTTCTCCCCAGAAGACCTTGATTTTGAGTTCAATCGTGACAATTTTGTGATGGAAATCGCTAATCCAGGCGCATTCGTCACGAGAGAGTTCCGAATTGACATTCATTCTTAAA---------------------------------TTATAAtaact----------tctcatttt-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      111015 297 +   193288 tttcagggagCACGACTACTTGCATACCATCACTAACAAAAATCTTGACAAGAAAGGCAAACATGACAGCGATGTTTACATTGACAAAATTGTGATTCGTGGAGCCAAATTTTACCCAAGAAATGCTCATATTTTCTTGGACGACTTCTCTCCAGAGGACctcgattttgaatttaatcGAGAAAATTTCGTGATGGAAATTGCAAATCCAGGAGCTTTCGTCACCagagaattcagaattgaTATTCactcatgaaaaaacaattcag-------------aTAAGGCTCtttattcact----------ttttattat-
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       67778 306 +   258924 TTTCAGGGAGCATGATTATCTTCACACAATCACGAACAAAAACTTGGACAAGAAAGGAAAGTTTGACAGCGATGTGTTCATTGAGAAAATCGTGATTCGTGGTGCCAAATTTTACCCTAGAAACGCTCATATTTTCCTCGATGATTTCTCTCCAGAGGATCTTGAATTTGAGTTTAACAGGGACAATTTCATCATGGAAATTGCCAATCCAGGTGCCTTTGTAACTCGTGAATTTAGAATTGATATTCATTCTTAattatataattt---------------ttattgattattgatgattgagctacataatttattttt
i caeJap4.Scaffold54    I 29 I 67

a score=-10464.000000
s ce10.chrX               466820 54 + 17718866 -A--TCTATT----CTCATCA----------TAATT---TACGGTTTTTCCTATTTTTTCTCCATC---TTCTTTAA-------------------------------------------------
s cb4.chrX              21015294 49 - 21540570 at--tttattaaaattcatCA----------TGTTT---TACGGT------------------------TTCTTTCAAG--------------------------------------CTtctttaa
i cb4.chrX              C 0 I 370
s caeRem4.Crem_Contig24   300911 99 -  1162296 AT--TCTATT----CTCATCA----------TGTTT---TACGGTTGTTT-TATTAATTCTATGTGTTCTTTTTCTGAGT-------AAATATATCTAGTGATTCAACATTCCTCCTCCCCCTTAA
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold630   5492380 43 + 20921866 -taacaTATT----CTCATCA----------TGTTC---TACggttgttt-------------------ttcttgtgaTT----------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      111312 61 +   193288 -t--tatttt----tttaatataaactgttttgtttagatatgatgtttt-------------------tttttcagattagcGGAT---------------------------------------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       68084 67 +   258924 I

a score=-8817.000000
s ce10.chrX               466874 58 + 17718866 ATATAAAGTATA---GTTGTTTGGTCAAAAAATGAAAGGGCA------------ATATTTCA---------TTTT-------CCGGGTT---
s caeRem4.Crem_Contig24   301011 80 -  1162296 --AAACAACATAGCAGCTGTctgaggagaaaaagaagggataTGAATGGACTCTAAGTAGTGTGTCGGCTATTTT-------GTGATTA---
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold630   5492423 33 + 20921866 --------CATA------------------------------------------AAGTAGTG---------TTTTAAACCAAttcattatct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      111373 24 +   193288 -------Acaca------------------------------------------aaataaca---------tttt-------ttggttt---
i caePb3.Scfld02_254    C 0 I 10201
e caeJap4.Scaffold54       68084 67 +   258924 I
e cb4.chrX              21015343 370 - 21540570 I

a score=-6632.000000
s ce10.chrX               466932 141 + 17718866 GGGAGAACAGTTGTTTCTAAATTAAATGATTTGAAGCGAAAGAAATGTCGTTTAAAGTTTTA----ACTTGACatggttaaaacg---accgaatatcataataaaaaattccaaaaaaatttcgatttttcataatttccagtcaaa
s caeRem4.Crem_Contig24   301091 108 -  1162296 --ATGAGTAGCACTT-----ACCAATTGATGAGAAGTGATAGGAA--TAGTTGGAAACTTGGTTGTATTCTTTATGAAAAACATA---TGTGGGTATAAGCA----------------------------TTTTAGTTTGTAGTCAAG
i caeRem4.Crem_Contig24 C 0 I 130
s caeSp111.Scaffold630   5492456  69 + 20921866 ---------------------------------------gaaaaa--ttgtttttatctcag----attttatattttaaacAGACTTTCTAAATACAAG------------------------------TTCCGGTCTCCGGA----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68084  67 +   258924 I
e cb4.chrX              21015343 370 - 21540570 I

a score=-576.000000
s ce10.chrX               467073 105 + 17718866 gttttggtaaattgccaaagttttgaaaaaatgtgactttttgaggaggggaggtgtagaa--tgttttaatacaaattattaaaacacagtatgaaaaaggtagga
s caeSp111.Scaffold630   5492525  81 + 20921866 GCCATGGTCA---TCAAAAGTTTCGACACCA--------------GAGAGCAAGAATAACAGCTGCTT------AGTCTATTAA---GTGGGGCGAAGGGGATAGAG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68084  67 +   258924 I
e cb4.chrX              21015343 370 - 21540570 I
e caeRem4.Crem_Contig24   301199 130 -  1162296 I

a score=-17953.000000
s ce10.chrX               467178 283 + 17718866 aaaaatactattttttggtcgacttcaa------------aaattataagtggca---------------------------aaaactgagtcattgta------actctttgacagtaaat------------------------------aaacaaatttcaaaa------------------aaagttttgaaacgttttttta----------------aacgatattcagtcattttggCATCATAGGACCCCACGGTTAAGG----------AAAATC------AAATCATTTTCAATAAATAATTAGTCTTATCAATTTC--CCCCGCT-----TGAC-CCCTTATCATCTCCCAGTGTCGATATCCACTTCAGCGCGTTGTAAAATTGCGGAGTGGACAACAAAAACA
s caeRem4.Crem_Contig24   301329 397 -  1162296 gaaaattttagtCTGTTTTTGATTTCGGTCATTGttactgaaattttggttAGTGTGATCTTGATTCCGGTCATTGTAACTcaaattttggtcagtgtattcCAGAGTGTGTCACTGTAAACGTCATTGTACCTGATTTGTTTTCCACTGTAAAGTAAATATTGAAAGATGGaaatcagattcaaaaaatttcgagaattttaCGTTTACATTTCCATAAGTAATCAATATACAGT--TTCTAACAAAAT---TTTCTACGTTCAGGtgttaatgaaaaaaatgtggtctctttcttttttcttagaa------CCATTTGGCCTTCGACCCCGctctgtttgtttttcttactttcCCCCAAT-------TCCTTTTCATCCGGTTG-Taaactgcagaaaaaaaaacaaagaga
i caeRem4.Crem_Contig24 I 130 C 0
s caeSp111.Scaffold630   5492606 148 + 20921866 ----------------------------------------AGAT--------------------------------------AAA---TGATAAGTGGA----------------------------CGGACC-------------------AAGTAGTccttgaaa--------------tcaaaaaacttt------------------------------atcAGCTTAgag-------------------------------------------aaaatg------ctttttttcgatttgaaaaat---ccctATATACTGAAGCTCAgctaaaaatgat--------------------------------------------aaaagttttgagaaaaaaacagaaaaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68084  67 +   258924 I
e cb4.chrX              21015343 370 - 21540570 I

a score=-4102.000000
s ce10.chrX               467461 55 + 17718866 AAACTCAAAAAAAATATAATGACCATGAGATGG------AGGTCTCACTACCAAAGGGATA---------
s caeRem4.Crem_Contig24   301726 41 -  1162296 aa---------------aatgaccaTGAGATGGGCACTCAGAGAACA-----AAAAGGGGG---------
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold630   5492754 35 + 20921866 ac---------------aatgaccatgaacaga------agaggtaa-----aaaaagaaa---------
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold54       68151 31 +   258924 --------------------aaactcaaaaaaa-------------------aaagggagagGTGTCATT
i caeJap4.Scaffold54    I 67 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e cb4.chrX              21015343 370 - 21540570 I

a score=39301.000000
s ce10.chrX               467516 144 + 17718866 GGCATCGTTAATGAGCCGGTA-------------AAACGAGAGGTTGATAAATATTGCGTCGTTTGGGAAGAAAAAAAG---GAGGAAAGG-----------GTGCAGATGGTTCACACGTGCTGCATCTTCATTT---------------------CCACACCACATGGGTGGTAGTAATGATTTGAATT-------------------------T
s cb4.chrX              21015713 190 - 21540570 GGCATCGTTAATTTGCCGGTA-------------AAACGAgggaatgaaaaatattgggTCGTTAGGCAAACGATGAGAAATGAGGAGAGAGGGGTGTGAAGGTGCAGATGGTTAACACGTGGtaaatcttttcttttctagtgttttttttgtatttctcaCTACATGGGAGGTGGTGA-AAACTA-------------TTCCATTGTCTCACGCT
i cb4.chrX              I 370 C 0
s caeRem4.Crem_Contig24   301771 169 -  1162296 GGCATCGTAAATGAGCCGGTA-------------AAACGAGAGAATGATAAATATTGGGTCGttaagaaaacgaaaaga---gagGGAAGA-----------GTGCAGATGGTTCACACGTGCTacatcttctttt-----------------catttctcaccaCATGGGTGGTAACAC-GATTTAAATTccgatttcttttcattttcaca---t
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold630   5492790 186 + 20921866 gagatCTTTAATGAGCCGGTAAAATGtgtgaatgaaatgagagaatgatAAATATTGGGTCGTtaagaaaacatt-------gaagagagaaggat------GGGCAGATGGTTCACACGTGCTACATCTTCGTCT-----------------CATTTCTCACCACATGGGTGGTAACAC-GATTTGAATTCCAtttactttttattcttcccCGGA
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold54       68182 115 +   258924 -GAATCGTTAATGAACCGGTG-------------AGACAAAAGAACAATAAATATGTGTT------------------------------------------GTGCAGATGGTTAACACGTGCTTCTTGGCCTTTT---------------------TCCCATCGCAAAAGTGGCAGTAT----------------TGCATTTCATTT---------
i caeJap4.Scaffold54    C 0 I 1347
e caePb3.Scfld02_254      111397 10201 +   193288 I

a score=11325.000000
s ce10.chrX               467660 49 + 17718866 GGTTTTCAATTTGGCCACCAT--------CATCATTAGCAACGCATGACACATCAAG
s cb4.chrX              21015903 57 - 21540570 GTTTTCTAGGGCTATCATCACCCTCTAAACATTCTTAACCATGCGTGACACATTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   301940 49 -  1162296 attttctggtgtcatcatcat--------catcatcatccatgCATGACACATTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5492976 49 + 20921866 TTTTTGTTctgtcatcatcat--------catcatcgtccATGCATGACACATTGAG
i caeSp111.Scaffold630  C 0 I 1095
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I

a score=-2372.000000
s ce10.chrX               467709 109 + 17718866 -----GTTAAGTAGGTCTT----------------------------------GAAATGAGTCATCT-CATACAACACACAGA-----------ATCTCTTGAAGCCTCATGAGTTGATGATAAATGCTCCGGTCCTAACTATAAAA----------CCACCGGCTTGTC
s cb4.chrX              21015960 107 - 21540570 -CTTGATGTGGGAGCCGCA------------------------CTGATCC---GAGGTGACTCATCGAAATACAACAACT-----------------------------------TGATGATATATGATTTGGTCCAACTTATAAAAGACCCCTCCTCTACCGACTTTTC
i cb4.chrX              C 0 I 1156
s caeRem4.Crem_Contig24   301989 159 -  1162296 CCCCCATGAGAAAGACCCGAGGAACCAAAAGCTTTTTTGAGATCTGATCCTGGAGGGTGACTCATC--CCTACaacaaataaactttttgtccTATCTCTCGAGTTTCTATCA-CTAATGATAAATGGATTGGTCCGTCTTATAAAAG-----CCCTCTA--GGTTTTG-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I

a score=433.000000
s ce10.chrX               467818 84 + 17718866 TCATATTTTTGAAGAAGTTCATTATTGTTTGGTTCTATGTAGGATTTAATTAAATTCTAAAATCTTTTGTCTCAGTTTTAAATA
s caeRem4.Crem_Contig24   302148 66 -  1162296 Ttat------------tttcgttcttctttcgTCTTAT------TTTGCcttatttcaaagttttgatctaATAGTTTTAATTA
i caeRem4.Crem_Contig24 C 0 I 276
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I

a score=0.000000
s ce10.chrX               467902 1364 + 17718866  
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I
e caeRem4.Crem_Contig24   302214  276 -  1162296 I

a score=5809.000000
s ce10.chrX               469266 257 + 17718866 CCGAAATAAATAACAAACATCA-ATCTCCACTCATTTT---CCCTTCCTCCGCAAATTGTTACTCCCCCCCCCCCTA-TGTCTCTCAGCTGTCAATTCCCCCAAGAAGGCA-------ATTTTCATCAGAAACATTTGGTATCTCAAGTCTCCATTTCCTTTAAAAAGTCCGTG--TATATTCTTTGTTC--------------------------AGGTCCCATGGGT-------AGAACTCTGTCTCTCTTTTTGTTTCCCATCTGCCGCCTCTTCATCCCAATTTTTTCCATTGTGCGTTT
s caeRem4.Crem_Contig24   302490 290 -  1162296 cctaaataaataaaagaaaaaatatctcTATTGTTGTTGCTCTATTCTTTC-----TTActattttatccatttttacTTTCACTCAGCTGTCAATTCCCTTTAGACGACACACAACAATTTTCATGAGAAACATTTGGTATCTCCGATCT-CATATCCTC---AAACTCAGTGCATATATTCCTTGTTTCTTAGTTTCTGAGTCTCTATCCTAAAATGTCCCGTGGGGGGCGGGAAGGGACct---tctctttctgttttccatctgccgcctctc--ttctcattttctgggTTTTGTTTTT
i caeRem4.Crem_Contig24 I 276 I 338
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I

a score=0.000000
s ce10.chrX               469523 1147 + 17718866  
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I
e caeRem4.Crem_Contig24   302780  338 -  1162296 I

a score=351.000000
s ce10.chrX               470670 5 + 17718866 ACATC
s caeRem4.Crem_Contig24   303118 5 -  1162296 aCACC
i caeRem4.Crem_Contig24 I 338 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I
e caeSp111.Scaffold630   5493025 1095 + 20921866 I

a score=273.000000
s ce10.chrX               470675 1 + 17718866 A
s caeRem4.Crem_Contig24   303123 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5494120 1 + 20921866 A
i caeSp111.Scaffold630  I 1095 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21016067 1156 - 21540570 I

a score=38440.000000
s ce10.chrX               470676 119 + 17718866 AAATCCCCATGGAGTATGAATTATGAGAAACACATCATCACTCACGATGCTTCTCAACCCCCT------TCTCAATGTTCCCAGGCAGTTTCATCTTGTAGTGTTTACTTATCCGCCCTCCCCTC
s cb4.chrX              21017223 104 - 21540570 AAACCCCTAAGGAGTGTGAATGATGAGAAACGCATCATCATTCACGATGCTTCGTTT------------TCTC-TTGTTCCCAGGCAGTTTCTTCTTGTAGTGTTTACTCACCCCGC--------
i cb4.chrX              I 1156 C 0
s caeRem4.Crem_Contig24   303124 124 -  1162296 AATCCCCTGTGGAGTATGAATTATGAGAAACACATCATCACTCACGAtgcttcttcttattcttctccaTCTC-ATGTTCCCAGGCAGTTTCTTCTTGTAGTGTTTActcacccccccccccccc
i caeRem4.Crem_Contig24 C 0 I 1533
s caeSp111.Scaffold630   5494121 101 + 20921866 GATTCCCTGTGGAATATGAATTATGAGAAACACATCATCACTCACGATGTCT-----------------TCTC-ATGTTCCCAGGCAGTTTCTTCTTGTAGTGTTTACTCATCCTTCCC------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I

a score=2478.000000
s ce10.chrX               470795 87 + 17718866 --GTCGGTTTCTGAAGTTTTTGTTGTTCAATTCCCACACACGCTGTTTGGTTGTGTTCGCATACATTTTTCACAAACATATTGAATTAG
s cb4.chrX              21017327 76 - 21540570 GTCTCAAACTT-----------CTGTTCTGTTTTCCCATACAC-GTTTGGTCTAGTTTCGAGAGCGTTTTCCATGCAA-ATTCATCTAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5494222 75 + 20921866 --ATCGGTTTT-----------CTGTTCTATTCCCACACACGC-GGTTTGTTGCTTGTTCAAGCAATATTCAGTGGAATATTCAGTTGG
i caeSp111.Scaffold630  C 0 I 1239
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeRem4.Crem_Contig24   303248 1533 -  1162296 I

a score=310.000000
s ce10.chrX               470882 7 + 17718866 ATACTTT
s cb4.chrX              21017403 7 - 21540570 GTTCTTT
i cb4.chrX              C 0 I 816
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeSp111.Scaffold630   5494297 1239 + 20921866 I
e caeRem4.Crem_Contig24   303248 1533 -  1162296 I

a score=0.000000
s ce10.chrX               470889 2557 + 17718866  
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21017410  816 - 21540570 I
e caeSp111.Scaffold630   5494297 1239 + 20921866 I
e caeRem4.Crem_Contig24   303248 1533 -  1162296 I

a score=789.000000
s ce10.chrX               473446 70 + 17718866 TTGTTGGCTGTCTTGTTATTTCCTTCCCTGACGACTGAAAACAA-TAGAC----------TAAAGCTGTTAGAA---AGCTCAG
s caeRem4.Crem_Contig24   304781 78 -  1162296 tttttagttttcttgttttttcctaAC------ACTGAAAACAAGTAGCCAGAAAAGCAATAGAACTAGCAAAATGTAGTCACG
i caeRem4.Crem_Contig24 I 1533 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21017410 816 - 21540570 I
e caeSp111.Scaffold630   5494297 1239 + 20921866 I

a score=902.000000
s ce10.chrX               473516 4 + 17718866 CGAG
s caeRem4.Crem_Contig24   304859 4 -  1162296 CAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5495536 4 + 20921866 CAAG
i caeSp111.Scaffold630  I 1239 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21017410 816 - 21540570 I

a score=17850.000000
s ce10.chrX               473520  87 + 17718866 CAGGTGTCTA------TGTAACTTCTTTTTT-GCTAGTTGAACACCTCATAA--------------TCGTAAAAGTTTATTTTAATTGTCGATTAGTGGTTTAACGGT
s cb4.chrX              21018226  88 - 21540570 CAGGTGTCTGCAGTCATGTAACACTTCTTCT------TTGAACACCTCGTAAAAATTGACTCAG--------------ATCTTAATAGTCGTTTAGTGGTTTAACGGT
i cb4.chrX              I 816 C 0
s caeRem4.Crem_Contig24   304863 108 -  1162296 CAGGTGTCCATAGGTATGttactcttttcttcttctcttgaaCACCTCGTAAAAACGGTGTCAACTACTTCTAATCTCGTTTTAATTCTCGTTTAGTGGTTTAACGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5495540  94 + 20921866 CAGGTGTCTG------TGTTACTCCTTCTCT--------GAACACCTCGTAAAAAAGGCATCAACCCCGTTTCGATACTTCTTAATTGCCGTTTAGCAGTTTGATGAT
i caeSp111.Scaffold630  C 0 I 299
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I

a score=549.000000
s ce10.chrX               473607 4 + 17718866 TTGA
s cb4.chrX              21018314 4 - 21540570 TTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   304971 4 -  1162296 TTAA
i caeRem4.Crem_Contig24 C 0 I 411
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeSp111.Scaffold630   5495634 299 + 20921866 I

a score=159.000000
s ce10.chrX               473611 30 + 17718866 AACAGACGCTAGGATGCGTCCATTTTCATT
s cb4.chrX              21018318 30 - 21540570 ATTAGTTTGTATCAAGGGTTTATAGTCATT
i cb4.chrX              C 0 I 207
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeSp111.Scaffold630   5495634 299 + 20921866 I
e caeRem4.Crem_Contig24   304975 411 -  1162296 I

a score=0.000000
s ce10.chrX               473641 313 + 17718866 GCGAAAACCAATAAATCGGTTCAATTTTCGACTAGATCTCATCAGTATACACTTTCTAAAACAAAGTTTTTGTACAGAATGAAAGTTTGCTATATTCCAGTACTACTTTCAATTATCATGTTTTAGTTTTATTTTTTAAATGTAGATTTAACTTGACTACTTTGCTTGTTAGATTTCTTCAAGTGTAGTTTTTAGTCTTTAACCAGTCCAAGTGCTTTTGAATTGAACAAAATTGCTCAACTGTTTCAAGCTGAAGTGCTCAAAATGCACTCTACCAAAAGAACGATTGTAGGTTTCTTGGTTGTGTCAAAAA
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018348 207 - 21540570 I
e caeSp111.Scaffold630   5495634 299 + 20921866 I
e caeRem4.Crem_Contig24   304975 411 -  1162296 I

a score=69.000000
s ce10.chrX               473954 2 + 17718866 CA
s caeSp111.Scaffold630   5495933 2 + 20921866 CG
i caeSp111.Scaffold630  I 299 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018348 207 - 21540570 I
e caeRem4.Crem_Contig24   304975 411 -  1162296 I

a score=12497.000000
s ce10.chrX               473956 184 + 17718866 TTTTAATCAACTAAAACGAGACGCCT--TTCCATTTTCT-TTTGT----------GAGAAAGCGTCCAGCTTCCCCCCCAATTCTTGCCAATTTTTGACTGTGCTCT-CCCGCTGCGAAGGAGACGAAGAAGTCATTTATTG-CCCCCGGTCA--TAGTGATGACCTCTCTCGCATTCATTGTTTTACC----CTACAACT-TTTG
s cb4.chrX              21018555 170 - 21540570 TTTCAATCAATTAAAACGACTCGCTCGTCTTACTTTTCTGTTTATAGGCACCAAGAACAAGGTTTT-----CAAtctcttgtctttttt-----------ttgctc--cctGC-----------AAGGCAAGTTTCTTGGCTACCCTCATTGCGACACTGATGACCTCTCACACATTCATTGTCATacc----cttc--tt-ttct
i cb4.chrX              I 207 C 0
s caeRem4.Crem_Contig24   305386 179 -  1162296 TTTTAATCAACTAAAAGGAAACGCCC--TCTCCTTCCCGGTTTATAGGCC-----AAAAAGGTTTTTGGCgcactcttttttctatctcaaCCG-----GCTGCTCT-CCCGctg----tgaagaagaaaagtcaTTCAGT--CCTTCCTTCC--TACTGATGACCTCTCACACATTCATTGTCTTACC----CTAC--TTCTTCG
i caeRem4.Crem_Contig24 I 411 C 0
s caeSp111.Scaffold630   5495935 150 + 20921866 TTTTAATCAACTAAAACGCAACCTCC--CTTGGTCCTCT--------------------------------CCGCCCCTCTTTTCTCCT----------GCTGCTCTGCCCgttgagaaagaaagacGAAAGTCAT-------TCTTTCAAAC--TACTGATGACCTCTCACACATTCATTGTCTTACTACCACCAT--CT-TTCG
i caeSp111.Scaffold630  C 0 I 752
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I

a score=4207.000000
s ce10.chrX               474140 65 + 17718866 ATGTCGTCTCATTTTCTTCTTGTTTC--------------TACGCGCACTACCA----TGTGGGGTTAATTGAAACATGATAT
s cb4.chrX              21018725 83 - 21540570 ttttcttttcatctgCTACCAGTATCTTATTTTCTGTATGTTGGCGTATCATTAAAATTCCTGAGTGAATTGAAACTTGATAt
i cb4.chrX              C 0 I 631
s caeRem4.Crem_Contig24   305565 68 -  1162296 TTTCCAATTCTACTACCACCAGTGT---------------TTGGCGTATCATTAAAATTTCCGTGTAAATTGAAACTTGATAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e caeSp111.Scaffold630   5496085 752 + 20921866 I

a score=157.000000
s ce10.chrX               474205 8 + 17718866 TTTGGTAT
s caeRem4.Crem_Contig24   305633 8 -  1162296 CCAAGTAT
i caeRem4.Crem_Contig24 C 0 I 1361
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018808 631 - 21540570 I
e caeSp111.Scaffold630   5496085 752 + 20921866 I

a score=0.000000
s ce10.chrX               474213 1718 + 17718866  
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018808  631 - 21540570 I
e caeSp111.Scaffold630   5496085  752 + 20921866 I
e caeRem4.Crem_Contig24   305641 1361 -  1162296 I

a score=674.000000
s ce10.chrX               475931 85 + 17718866 ACTTTTTCAAAGCCCTGATTGATTAATATAACCTCATCTGAATTTTTCATCTCTCT---TGTGA----------CCGGAAAAAAGAGACCGCTGACAA
s caeSp111.Scaffold630   5496837 84 + 20921866 actttttc---tctctgatttGTT---------TCATGTGAtagtttc-tctctctccctatgatttcattttcccggaaaaaagttatt-ccGAGAg
i caeSp111.Scaffold630  I 752 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018808 631 - 21540570 I
e caeRem4.Crem_Contig24   305641 1361 -  1162296 I

a score=396.000000
s ce10.chrX               476016 4 + 17718866 AAGG
s caeRem4.Crem_Contig24   307002 4 -  1162296 aaag
i caeRem4.Crem_Contig24 I 1361 C 0
s caeSp111.Scaffold630   5496921 4 + 20921866 gggg
i caeSp111.Scaffold630  C 0 I 6
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21018808 631 - 21540570 I

a score=20300.000000
s ce10.chrX               476020 56 + 17718866 CCTAGCAAATCTCTTCTACCGTGCATAA-TTGACATTCTCTATATAATTATGGCC--AA
s cb4.chrX              21019439 57 - 21540570 CCTTACAAATCTTTTCTACCATGCATAATTTGGTATCCTCTTTATAATGACGGCCAA--
i cb4.chrX              I 631 C 0
s caeRem4.Crem_Contig24   307006 54 -  1162296 aCTAACAAATCTCTTCTACCGTGCATAA-TTGGCATCCTCTATATAATTATGGCC----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5496931 54 + 20921866 TCTAACAAATCTCTTCTACCGTGCATAA-TTGGCATCCTCTACATAATTATGGTC----
i caeSp111.Scaffold630  I 6 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I

a score=3199.000000
s ce10.chrX               476076 42 + 17718866 ACAAAAGTTTTGTTG------TGTTGGCTGTTTTTTTTT--------TCATCTTCC
s caeRem4.Crem_Contig24   307060 53 -  1162296 ---AATGTTTTGTTGTGTGTATgtattcaatgtttttttttgttgtcaaaTCTCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5496985 39 + 20921866 ---AATGTTTTGTTG------TGTAgtcaatgttttttt--------gattctccc
i caeSp111.Scaffold630  C 0 I 55
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21019496  0 - 21540570 C

a score=584.000000
s ce10.chrX               476118 30 + 17718866 CCCATTTCCGGACTTTTTCATACATCTTTT
s caeRem4.Crem_Contig24   307113 21 -  1162296 TCC---------CTTCTTTTTACGTCTTTT
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21019496  0 - 21540570 C
e caeSp111.Scaffold630   5497024 55 + 20921866 I

a score=0.000000
s ce10.chrX               476148 192 + 17718866 TTTTTACTACTTTCTTGTATAACGTTATCATTTTCAATCAATTGTGAAATACCGAAACTAAAAGAAACAATTCAGTCATTTTCAATACAATTGTTTAAGTTTGtatatatatatatatatatatatatatatatatttatatatTTTTGTAAAGTGAAAAAAAAAAATCAAAAAGTTTAAAATTTCCAAATA
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeJap4.Scaffold54       68297 1347 +   258924 I
e cb4.chrX              21019496   0 - 21540570 C
e caeSp111.Scaffold630   5497024  55 + 20921866 I
e caeRem4.Crem_Contig24   307134  30 -  1162296 I

a score=279.000000
s ce10.chrX               476340 8 + 17718866 TTTTATAC
s caeJap4.Scaffold54       69644 8 +   258924 tctcattc
i caeJap4.Scaffold54    I 1347 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e cb4.chrX              21019496 0 - 21540570 C
e caeSp111.Scaffold630   5497024 55 + 20921866 I
e caeRem4.Crem_Contig24   307134 30 -  1162296 I

a score=-520.000000
s ce10.chrX               476348 86 + 17718866 CATTTTTTTGTAAAT-----------ATTTCATGTTGTTCATTTACTTGCTCCATTATCTGATTTATTTTCAAGTTTC---AATTTTTTATTG---------------GTTACCC
s cb4.chrX              21019496 93 - 21540570 CGtttttttgtatat-----------gtatctttgtatttaat--atttttccaatcccccatctctttt----tttc-----tttttgactgctgcaaaaaatacattttatcC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54       69652 95 +   258924 cattctTTTAATAATTGTTGTCGTCCATGTTTTGTTGTTTAC---ATATGGCCAGCCAATCAACTCTTTTTAACTTTCACTAACCTTAGAGGG-----------------TATCC
i caeJap4.Scaffold54    C 0 I 5
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeSp111.Scaffold630   5497024 55 + 20921866 I
e caeRem4.Crem_Contig24   307134 30 -  1162296 I

a score=-1570.000000
s ce10.chrX               476434 18 + 17718866 ACTAAACATCCGGAAT---------------------CC
s cb4.chrX              21019589 31 - 21540570 -CTAAACGTCCGGACGGCAC-------ACACTTAGTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   307164 39 -  1162296 ACTAAACATCCGGAATAACCCAAAAGAACCATTAGACCT
i caeRem4.Crem_Contig24 I 30 C 0
s caeJap4.Scaffold54       69752 13 +   258924 ACAAAACATGCAC--------------------------
i caeJap4.Scaffold54    I 5 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e caeSp111.Scaffold630   5497024 55 + 20921866 I

a score=7502.000000
s ce10.chrX               476452 40 + 17718866 TATTTCACACTTGAAAAGCTT-------------TCCAACTTT--------TTATCTAAAA
s cb4.chrX              21019620 58 - 21540570 TATTTTACACATGACAGACCTTTTCCTTTACGTGTCTGCCTTT---tctttttatctgaaa
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig24   307203 48 -  1162296 TATTTCACACATGactaattt-------------tctgaatttcaacttttttatctggaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5497079 54 + 20921866 TATTTCACACATGACAGATTTCCCCTC-------TCTAACTTTCTACCTTTTTATCTCGAA
i caeSp111.Scaffold630  I 55 C 0
s caeJap4.Scaffold54       69765 35 +   258924 GTTTTTACGCTTGAAAAGTTTTGTGT--------TCGGCTTTT------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I

a score=-30.000000
s ce10.chrX               476492 25 + 17718866 CAACTTCCGGAGTTC--------CGTCTCCCTG
s caeRem4.Crem_Contig24   307251 20 -  1162296 aaactTCCGGAGTTCTTATG-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5497133 33 + 20921866 AAACTTCCGGAGTTCTTATGACACGCCTTCCGG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       69800 15 +   258924 AGTCCTTCATCCTTC------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I
e cb4.chrX              21019678 23 - 21540570 I

a score=-7016.000000
s ce10.chrX               476517 58 + 17718866 GCCCAGCTTTCGTTTTTT------------TTTCTCATTCTTTGACCT---------TAGCCAGCATGAACTCCAACTC------
s cb4.chrX              21019701 49 - 21540570 ACACTATTCCTATTTTA-------------TTTTCGACAC-TTGACCT----------------CATGAACTGCAACTC------
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig24   307271 79 -  1162296 ACACGCCTTCCGTTTTGTGAGGGACCCCCCTCTTCGATTCTTTGACCTTGCACATTTCAATAAACATGAACTCCAACTC------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5497166 51 + 20921866 -----------------AAAGAAATCCGAACTCTCCATTCTTTGGCCC-----------ATCGAAATGAACTCAAATGT------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       69815 62 +   258924 --ATCCCCTTCATTAGGT------------CTTCTTATGCATAAATGT--------TCAATTAAAGTG-TCACCAaagcattttt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      111397 10201 +   193288 I

a score=176655.000000
s ce10.chrX               476575 446 + 17718866 TTTTCAGATGGATTGTGCTGCAATTTGTTTGCTCACTACTGCCGTTCAATTTATTCCACTTTCATCAACCATAAACTGCACGTATTGCGTGGAAGCTAGATCGACGTACGAGCATTGCTTCAAGGATGTTATAGAATGTGCATATCGGGATCCAAGCTCTTTAATTATTTGTTTGAATGTGTATGAAAAGAATGGGTTAGTGATAGAGAATTGTCAACGTATAATCATCTAAAATATTTTGAAATGTTTTCAT-------------AAAACTTTCAATGCTACGGAGATATGCTTACCTAATTGCATATCTCTAAAATTATGAATATGTATGCGTGTTAATCAACGATGTT---------------------------------CTACGATTTG----------AAA---TTTTCAGTGGAGACCCCGCCATAATTCAACACACAATTCGATGTATATCCTACCAAGACTACTACGTTCCAGACCATTCAATAAGACAGGTTGGT
s cb4.chrX              21019750 333 - 21540570 CTTCCAGATGGATTGTGCGGCAATCTGTTTGCTCACAACTGCAGTACAGTTCATTCCACTGTCTTCCACCATTAATTGCACTTATTGCGTCGAGGCTCGATCCACCTATGAACATTGTTTCAAAGATGTCATCGAATGTGCTTACCGTGATCCAAGCTCACTGATAATTTGTTTGAACgtctatgaaaaaaatgggtaAACG---------------------------------------------ATTTTT-------------CACAT--------GCtaacaa----------------------------------------------------------attcat---------------------------------ttttaa--------------aaattattgt-aGAGATGATCCTGCAATAGTTCAACACACAATTCGTTGCGTTTCCTATCAAGACTACTACGTTCCAGATGAATCCATTCGACAGGTTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   307350 359 -  1162296 GTTTCAGATGGACTGTGCAGCAATTTGTTTGCTCACAACTGCTGTTCAGTTTATCCCATTGTCCTCTACTATCAATTGCACCTATTGCGTTGAAGCCCGCTCTACCTATGAGCATTGCTTTAAGGATGTTATTGAATGTGCTTACCGGGATCCCAGCTCTCTTATTATTTGTCTGAATGTTTATGAAAAGAATGGGTAAGTGG---A----------------------------------------ACCTTC-------------TAAATTCG---GAGTTTGCAGtcactattt-----ttttgt--------------------------------------tttctt---------------------------------ttttaaactt----------aaatAATTTT-AGAGGAGACCCAGCTATTGTTCAGCACACAATTCGATGCATCTCCTATCAAGACTACTATGTTGCAGATGAGTCGATTAGACAGGTAGGT
i caeRem4.Crem_Contig24 C 0 I 765
s caeSp111.Scaffold630   5497217 487 + 20921866 TTTCCAGATGGATTGTGCTGCAATTTGTCTTTTGACCACTGCGGTACAGTTTCTGCCGCTTTCTTCTACTGTCAACTGCACCTATTGTGTAGAGGCTCGCTCGACTTATGAGCACTGCTTCAAGGATGTCATTGAATGTGCCTATCGGGATCCAAGTTCGCTAATCATTTGCCTTAATGTTTATGAAAAGAACGGGTGAGTGA---AGTAATAACaacctttttcatttctaaaatttaaataattcatttttatcgaaaaagttCCAAACTTT---TGATTTAGGAATACTTTTAC----TTTTgtagaaacaaaattttgtgAAC-------TGATCATCAAAGTTCGTCTAACAAGTCAACAttgaatctttgaaaatcacttttgattcttctcataataaaatgatttcCAGAGGGGACCCAGCAATAGTTCAACACACAATCCGATGCATCTCCTACCAAGATTACTACGTACCAGATGACTCCATTAGACAGGTAAC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254       80274 402 -   193288 ttttcagatggattgCTATACAATCTGCCTTCTAGCAACTGCGGTTCAGTTCAGCCCATTAACATCTACCACAAACTGCACTTATTGTGTAGAAGCTCGTTCCACATACGAACATTGTTTTAATGATGTAATCGAATGCGCATATCGTGATCCCAGCTCCTTGATCATTTGTCTAAATGTTTACGAAAAGAACGGGTCAGTGA---AGTTTCCACAGTC---------TCGAAAAACGCGATAACTCTGTTGT-------------TAAGCGAT---TGGTTaaaaaaaGCT---------CTGTAGAGAAACAAA----------------------TATCACAATAcct---------------------------------ttctgattttatcaat----------ttttcagtgggGACCATGCGTTAGTTCAGCACACAATTCGATGCATATCTTATCAAGACTTCTACGTCCGTGATGATTCTATAAAGCAGgtaaa-
i caePb3.Scfld02_254    n 10201 C 0
s caeJap4.Scaffold54       69877 332 +   258924 ctttcagatgGATTGTGCTTCCATTTGTCTTCTAACTACAGCAGTTCAATTTATTCCACTTCCCTCCACAATCAATTGCACATACTGTGTTGAAGTTCGTTCCACTTACGAGCATTGTTTTAAAGACGTCATAGAATGCGCATATCGAGATCCAAGCTCTTTAATCATCTGCTTGAatgtttatgaaaaaaatgagtATGTTT-------------------------TTGAAAGCCAA--------ACTCTT-------------CAAAA------TAATATAAACAAACG-------------------------------------------------------TCAT---------------------------------TT-----------------------------AGCGGGGACCCTGCAATAATCCAGCATACGATCCGATGTGTTTCTTATCAAGATTATTATGTACCAGATGGGTCAATTAGAAAGGt----
i caeJap4.Scaffold54    C 0 C 0

a score=-17166.000000
s ce10.chrX               477021 82 + 17718866 CTTATACAATTTTTTTTTCTATCTGTCTTTAATTGATTTCAC-TTAAACCATTTAACATGTTTCTTCAAAATCAATTTGATG-----T
s cb4.chrX              21020083 35 - 21540570 -----------------------------------------------ATCACtt------tttttACACAGTCATATAAAAAACGTTT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630   5497704 42 + 20921866 -----------TTTCTCATATCC---------------------GAAACCACTT------CTTCTCCAAGACCAAATAA--------T
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_254       80676 34 -   193288 --------atgtttctttttttct-------------------tgaaaacaatc------TTTTTC---------------------T
i caePb3.Scfld02_254    C 0 I 2
s caeJap4.Scaffold54       70209 50 +   258924 ----------agttattttttcctttgctgttttatttttttgttcgaataTCT------TGTCTG----------------------
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   307709 765 -  1162296 I

a score=111434.000000
s ce10.chrX               477103 137 + 17718866 CAGGTCAGCGCCGGCGGCTCGTGTGCATTCGAGCACATTCAAAAGTGTGAATGTGATGTGTGCCGATCACCAACTACATCCACAAGCACCACTACGACAACCACTCAAATCACCCCATCCATGCATAGAAAGTGAGT
s cb4.chrX              21020119 130 - 21540570 -AGGTCAGTGCCGGCGGTTCTTGTGCATTCGAGCACATTCAAAGATGCGAATGCGATGTGTGCCGCACTCCGACGACAACCACA------ACTACAACTACCACTCAAATCACCCCTTCCATGCATAGAAAGTGAGT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   308474 137 -  1162296 CAGGTCAGCGCTGGCGGTTCGTGTGCATTTGAGCACATTCAAAAGTGTGAATGTGATGTGTGCCGCTCTCCAACAACCACTACAAGTACGACCACAACTACCACTCAAATCACCCCTTCCATGCATAGAAAGTGAGT
i caeRem4.Crem_Contig24 I 765 C 0
s caeSp111.Scaffold630   5497748 134 + 20921866 TAGGTCAGTGCCGGAGGTTCGTGTGCATTTGAGCACATTCAAAAGTGTGAATGTGATGTGTGCCGCTCGCCGACAACTACTACA---ATTACGACAACGACCACTCAAATCACCCCTTCCATGCATAAAAAGTAAGA
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_254       80712 137 -   193288 TAGGTTAGTTCTGGAGGTTCATGTGCGTTTgaacacattcaaaaatgtgattgtGATGTATGTCGTCCTCCACCAACTACAACAAGCAGCACGACAAGCAGTACTGAAGTCGTTCCTTCTGTTcataaaaagtgagt
i caePb3.Scfld02_254    I 2 I 567
s caeJap4.Scaffold54       70259 128 +   258924 CAGATCAGTGAGGAAGGTTCCTGTGCATTCGAGCATGTTCAAAAGTGTGAGTGTGATGTTTGCCGGTCACCAACTATTGCACCA------ACTACAGTTGCTCCT---ACGACCTCTTCGATTCATAGAAAGTTAGT
i caeJap4.Scaffold54    C 0 I 438

a score=667.000000
s ce10.chrX               477240 2 + 17718866 GG
s cb4.chrX              21020249 2 - 21540570 GG
i cb4.chrX              C 0 I 66
s caeRem4.Crem_Contig24   308611 2 -  1162296 GA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5497882 2 + 20921866 GA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I

a score=-849.000000
s ce10.chrX               477242 5 + 17718866 TACTA---
s caeRem4.Crem_Contig24   308613 2 -  1162296 ---TG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5497884 5 + 20921866 ---TGATA
i caeSp111.Scaffold630  C 0 I 144
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251 66 - 21540570 I

a score=602.000000
s ce10.chrX               477247 49 + 17718866 TCAAACAAGTATAGAAAAAAAAT------AGAAATAGGCTGGAATTTTGCTGAAA
s caeRem4.Crem_Contig24   308615 44 -  1162296 ------AAATAGGGAaaaagaattctggaaaagaacAGTTGGA-----GTTGAAA
i caeRem4.Crem_Contig24 C 0 I 35
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I

a score=0.000000
s ce10.chrX               477296 83 + 17718866 TTGTTTGGTTTTTTTATATGCAGCAGGGATGTTTCAGAACATTCCAATTTTCAGTTTGTGAGAGAGTATTGTCTTGAAAATTG
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I
e caeRem4.Crem_Contig24   308659 35 -  1162296 I

a score=-9.000000
s ce10.chrX               477379 88 + 17718866 TTATATAAG-CTGAAAGGAAATAGCCATGAAAACAATAATTTTTGAAATCGCCTGTGCACACAGTTCAAAAAATTGCGGCGATCTGATG
s caeRem4.Crem_Contig24   308694 61 -  1162296 TTAAATAAGATTGGGTagcaaaaatgataaaa--------ctttCAAGTCG--------------------AGTTGAAGTGATATGTCG
i caeRem4.Crem_Contig24 I 35 I 92
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I

a score=0.000000
s ce10.chrX               477467 253 + 17718866 GGAGTCCCCAGGCTACAATTATTTTTCCACCAACCAACCGCAGAAAGTTTTGGAACATTATTGTGTTGTGCACGACTGTATTTGTATCGCAGGACTTTTGGCAGGAAAAAACACTTGTACAATTTTGATTATGCGGCGGTCGTCCAGTAGATTACCAAAAACAGTAACTTGAATAAACAAAGTTCGTGTGTTCAACAAATCTAATGGAAAGAGGATACAAAAAGTGGCCACCGTTCATGTTTTTTTGTGATGT
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251  66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I
e caeRem4.Crem_Contig24   308755  92 -  1162296 I

a score=405.000000
s ce10.chrX               477720 59 + 17718866 GATCCACTCATTTAAACTTGTATTTGTATTTCTATTCAAAATATAGAAAACAGTAGTTA
s caeRem4.Crem_Contig24   308847 46 -  1162296 GAATCGCCCTTTTCAA-----------GTTTCCATTCAGAAGATCAACAAAACT--TCA
i caeRem4.Crem_Contig24 I 92 C 0
e caePb3.Scfld02_254       80849 567 -   193288 I
e caeJap4.Scaffold54       70387 438 +   258924 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I

a score=-2676.000000
s ce10.chrX               477779 35 + 17718866 CTGGAAGTTTGTGAA----AAAAACCTATAATTTGAAAA
s caeRem4.Crem_Contig24   308893 16 -  1162296 TTGTca-------------------ctattatttt----
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       70825 32 +   258924 cttgaactttaaaaaaacgaaaaacctGTCAA-------
i caeJap4.Scaffold54    I 438 C 0
e caePb3.Scfld02_254       80849 567 -   193288 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I

a score=182.000000
s ce10.chrX               477814 2 + 17718866 AT
s caeJap4.Scaffold54       70857 2 +   258924 AT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       80849 567 -   193288 I
e cb4.chrX              21020251 66 - 21540570 I
e caeSp111.Scaffold630   5497889 144 + 20921866 I
e caeRem4.Crem_Contig24   308909 0 -  1162296 C

a score=-849.000000
s ce10.chrX               477816 3 + 17718866 --GTA--
s caeSp111.Scaffold630   5498033 3 + 20921866 --GTC--
i caeSp111.Scaffold630  I 144 C 0
s caePb3.Scfld02_254       81416 3 -   193288 --GCA--
i caePb3.Scfld02_254    I 567 C 0
s caeJap4.Scaffold54       70859 7 +   258924 ATGTACA
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21020251 66 - 21540570 I
e caeRem4.Crem_Contig24   308909 0 -  1162296 C

a score=87941.000000
s ce10.chrX               477819 129 + 17718866 TTACAGAAAGCATCATC---ATCATCACCATCACAAGGAGAACTCCAGTCACTATCACAAACATGATCAGCTGGTATTTCCAAACAACACATTCGCCCAGCAGTACCGGGATAGTGGATATTATCTGAAATC
s cb4.chrX              21020317 129 - 21540570 TTCTAGGAAGcatcatc---atcaccatcaCCACAAAGAGGGATCCAGCCATAACCGCAAGCATGATCAACTCGTATACCCCAACAACACCTTTGCACAGCAGTTCAGAGATAGCGGACTCTATTTAAAATC
i cb4.chrX              I 66 I 4140
s caeRem4.Crem_Contig24   308909 126 -  1162296 ---cagaaaacaccaTC---ACCACCATCACCACAAAGAGGAATCCAGTCATCATCACAAACACGACCAGTTGGTGTACCCAAACAATACATTTGCTCAACAGTACAGGGACAGCGGATATTATCTCAAATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5498036 129 + 20921866 TTCCAGAAAACACCACA---AACACCACCACCACAAGGATGGATCAAGTCACAATCACAAACACGACAAGTTGGTGTACCCTAACAACACCTTTGCACAGCAATACAGGGATAGTGGATACTACCTGAAATC
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_254       81419 120 -   193288 TTACAGAAAACACCATA---------GTCATCACAAAGGT-AATCA--TCACAAACACCACCAACAGCAGCTGGTTTATCCAAACAACACTCTTGCGCAACGATACAAAGACAGTGGCTACTACCTCACGTC
i caePb3.Scfld02_254    C 0 I 2
s caeJap4.Scaffold54       70866 132 +   258924 TTCCAGAAAAcatcaccaccaccaccaccatcacAAAGATGAGAAAAACCGTAGCTACAAACAAGATCAGCTCGTCTTCCCAAACAATTCATTTGCTCAACAATACAAGGACAGTGGATACTATTTGTCCTC
i caeJap4.Scaffold54    C 0 C 0

a score=-3156.000000
s ce10.chrX               477948  9 + 17718866 TGCAA---------CATC
s caeRem4.Crem_Contig24   309035 18 -  1162296 TGGAGTTTGTCAAATGTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5498169 14 + 20921866 TGGAATACCT----TCTC
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_254       81541  4 -   193288 --------------CCTC
i caePb3.Scfld02_254    I 2 C 0
s caeJap4.Scaffold54       70998  9 +   258924 -----TTCTG----CACC
i caeJap4.Scaffold54    C 0 I 636
e cb4.chrX              21020446 4140 - 21540570 I

a score=317.000000
s ce10.chrX               477957 3 + 17718866 GAG
s caeRem4.Crem_Contig24   309053 3 -  1162296 AAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5498183 3 + 20921866 AAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254       81545 3 -   193288 AAG
i caePb3.Scfld02_254    C 0 n 0
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=-1407.000000
s ce10.chrX               477960 47 + 17718866 -CTTTTCTCTAATGATTATTACGGCTTTCGCCACTATTGTTCTTATTC----------
s caeRem4.Crem_Contig24   309056 43 -  1162296 TTTTTCCT-------TACTTCTGATTTCCAT--------AACATATTTATTTGTGTTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5498186 40 + 20921866 -TCTTcctttgactatttttttgactgTCGT--------GTCCTATTTC---------
i caeSp111.Scaffold630  C 0 I 36
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=-680.000000
s ce10.chrX               478007 60 + 17718866 T-GTAAAACCGGAAAGTCACTCACT------TTATTCAAAGTTC-------------GGCCTATTGTAACAT--TGAGTCTA
s caeRem4.Crem_Contig24   309099 77 -  1162296 TAGTGAAATTG----GTCCCCGACTAAACCGTTATCCAAGTTGTAAAATAAGCTAAAAACCCTTTGTGACATAATGag-ctt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5498226 36 + 20921866 I

a score=5133.000000
s ce10.chrX               478067 155 + 17718866 TTTCTCCTCGTTTAATTTTTTCGAATATTATTACTCTAT-------TCTTATTTTTGTTTTTT--ATCCTCTACCCCTT-----------CACCAATATAACACGATC---CCTCTGTTCGACA------ATGTTTCTC----------TTCATCGAACCGTGACAATTTTG--CATTCACTACTCGGGTACACAC
s caeRem4.Crem_Contig24   309176 145 -  1162296 tttct-------------ctc-------tcttattttttg------tctgattatctttatttttgtccCC-------------------CACCAA------ACGATCTGCTCCCTGTTCGACCATGTTACCTTTTCTCCTTATACACATTCATCGAACCGTgacgttttcgaaaattcacttCTCGGGTAGATAC
i caeRem4.Crem_Contig24 C 0 I 1004
s caeSp111.Scaffold630   5498262 177 + 20921866 TTTTTGGTAGTTCCACAATTCCAAAGGTTCATAATCTTCGTGAATTTCTGATTATCGTTCTCTGAATACCCAATCtccattcaaatttttcccCAA------ATGATCTTTTCTCCGTTCGAAT------CTTCTTCCCCCCATATTC-TCCCTCGAACCGTGACGACTTTG--AATTCACTTCTCGGGTAC----
i caeSp111.Scaffold630  I 36 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=840.000000
s ce10.chrX               478222 39 + 17718866 TTTTTTTACACACTTTTTTTTGACTATTTCACATTGTAT
s caeSp111.Scaffold630   5498439 33 + 20921866 ------CGTAACCTTTTGTCTAATATTCCCACATTGTAT
i caeSp111.Scaffold630  C 0 I 6
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   309321 1004 -  1162296 I

a score=0.000000
s ce10.chrX               478261 514 + 17718866  
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5498472   6 + 20921866 I
e caeRem4.Crem_Contig24   309321 1004 -  1162296 I

a score=1041.000000
s ce10.chrX               478775 271 + 17718866 TTTCTCAAAAATATGGAAAGACGAAACAATTTATAGTTCATAAAACGAATAGAAAAGGGAAGAAACAGCTCG------TTTGCATATGAAAACACTATATCGAACTGACAAAATAT------CATCTATGG---GAAAACGCATCATATT----------TTTGTTCTTCTCTGATTGAAAGA-----TACCAGCTATATTCCAATTGATCTTTTTCTTTCGTTTAACAATGAGCTCAGCGACTGAAGTGGAACTGA--ATCAAGATAAACCGGTAAACGAATTGGATTTGAAGATTGTTATA
s caeSp111.Scaffold630   5498478 282 + 20921866 TtcctcgaaaaaataaaatgataaaaaagatcaaaagttattgttcagattcaaaaaaaaaaattcaaatcgaGTCGTTTTGCATATCAATAGA--------AATCGACAAAGCACAGGCAACATCTATCGATAGAAAAGCCAACACGATGGCTTTCCGGTTTATTTTCCAGTGctttaaagaatttttgcAAGA---AttcaaactcactttttgcAGTCGA--AACGATGAGTCTCACAGT--ATATCCACCTGATCAGCCACCTAAACCAATTTACACATTTCGATTGAA------Tatc
i caeSp111.Scaffold630  I 6 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   309321 1004 -  1162296 I

a score=11747.000000
s ce10.chrX               479046 211 + 17718866 AAAAAGGCAGAACTGATTGGATCGTACATGCACCCAGCGATGAAAAGTTAGGCATTCAAACACGTTCCGGGATATAGATAAGA---CTGGT-ATTACAGGAATGAAACATTTCTACTATTATAATGGAAGAGAATTCTGTCACGCACTTCAGAGATTCTACGAGTGGAAATATCCTGACTTTAACTGTAAGTTACAGCTGAATTTAATTTTTTCT
s caeRem4.Crem_Contig24   310325 201 -  1162296 -AGAAAGGAGGA--AATCGGAACCTACATTCATCCTGTTGTCAGACGT---------AAGCTC--cccactttttaaaaaatacgtATTTTAATTCTAGGTCTGAAGCACTTCTACTTCTACCATGGAAAAGAGTTTAACTACGCGATTCACCGCTTTTATGAATTGGAAAGTCCAGAGTTCACTTGTAAGacctttttcaattcaacaGTTTCT
i caeRem4.Crem_Contig24 I 1004 I 15
s caeSp111.Scaffold630   5498760 204 + 20921866 aagaaagaagaatggatCGGTTCGTATGTGCATCCAGTTATGAGAAGT-----AATAAAGTTTAACCCAagttcgaaacaaaa---aaggtaaTTTCAGGAATGAGATACTTCTATTTGAGACATGGAATTGAATTCAACGCCGCTATCCAAACATTCTATCAATGGAGATCTCCAGATTTCAATCGtgagctttttttc---tctattcttccT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=439.000000
s ce10.chrX               479257 11 + 17718866 TAATATAATAC
s caeSp111.Scaffold630   5498964 11 + 20921866 CACTACAGTAC
i caeSp111.Scaffold630  C 0 I 29
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   310526 15 -  1162296 I

a score=0.000000
s ce10.chrX               479268 530 + 17718866  
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5498975  29 + 20921866 I
e caeRem4.Crem_Contig24   310526  15 -  1162296 I

a score=642.000000
s ce10.chrX               479798 27 + 17718866 TTTCAGTTATAATAATGGTCACCCGCA
s caeRem4.Crem_Contig24   310541 27 -  1162296 TTTTAGACATCATCGACATCACCCGTC
i caeRem4.Crem_Contig24 I 15 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5498975 29 + 20921866 I

a score=23736.000000
s ce10.chrX               479825 232 + 17718866 AGTTCATTCAAACTCGTGTTCAAGAAATCTTCAACAACCGAAACAAGTGTCGAGTACTCCATATGTACCGAAATGCCATTCAATGCTTCAACCTTTTTTTCTGCAGAGATTTTTTTGCGATTCTGCGCTACCAGGAAGACTTTTTCAAGTTTGAAAGACTCGAAAGCTTTCTCAGCTACGTCTATGATCCTTATGTCGATTCTTTGAGAGACGTCTCATCAAAAGCGTTTTT
s caeRem4.Crem_Contig24   310568 232 -  1162296 GATTCATTCCCCAACGTCTCCATGAAATTCAACACATTCGTGGAAAGTCACGAGTCGTCAGGATGTACCAGAAAGCAGTAGACAACTTCAGTCTCCTCTTTTGCCGTGATTTGTTCGCCATCATGCGCTACAAGGAGGACTATTTCAAATTCGAGCGCTTGGAAAACTTCTTGAGCTTTCTGTATGACCCATCAATCAACTCGTTGAAAGATGTTAATCTGAAGGCTTTCTT
i caeRem4.Crem_Contig24 C 0 I 4394
s caeSp111.Scaffold630   5499004 232 + 20921866 AGTTTATCCACTTGCGTCTTCATGAACTCAGATTCATTCGAAGCAAAGCTCGCGCAGTCAGAATGTACAAATATGCCCTTCAAAACTTCCATCTCTTGTTCTGCCGTGACTTGTTCGCTATCATGAGATACAAGGAAGACTTTTACAAGTTCGAGAGACTCGAGACCTTCCTCACCTATGTCTATGATCCGTCCCTTCAAACATTGAAAGACACCATGTTGAAAGCTTATTT
i caeSp111.Scaffold630  I 29 I 8000
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=0.000000
s ce10.chrX               480057 962 + 17718866  
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5499236 8000 + 20921866 I
e caeRem4.Crem_Contig24   310800 4394 -  1162296 I

a score=2197.000000
s ce10.chrX               481019 61 + 17718866 TTTTCAAGTACTACAGAATTTCGGGTCTTAAGCGGAACCGAGTAATCGTAGAAATCTCCCG
s caeSp111.Scaffold630   5507236 61 + 20921866 TCTCCATGTAGAGCAGAATTTCTGGTTTGCTGCGGTAGCGAGTGATAACACAGATCTCGCG
i caeSp111.Scaffold630  I 8000 I 4341
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   310800 4394 -  1162296 I

a score=0.000000
s ce10.chrX               481080 193 + 17718866 AACAGTGGCGTATGCCTAGTACCGTCAAATGTAATTTAGATAAAAAGCAACAAAAAAATTCTCAGTTTTGTCTTCCATGTCTGTTTCAATTTTTTCTTTATTGAAATTTTATTTAAACAGACAAAAATTTGAATCTCCCTCATCTCACCAGATTCTTTGTTGATGTACACCTGCGGTGGTACTCTACTATTAG
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5507297 4341 + 20921866 I
e caeRem4.Crem_Contig24   310800 4394 -  1162296 I

a score=-2688.000000
s ce10.chrX               481273 169 + 17718866 ------------------------------TTCCTTCTCCTCCCGTCTTGCCGCAGCTCTCTGAATTGCTGCCAGCTGGTTGTCATGGTGACT---GCTCG-----CGCATGGCTCAGCTAGTGTTTGCAATACGTTTTT---------------GGTTTTTCGTTAATGAACCCTCAGAGATTTGGGCTAATCAATTATTTTCTACAA-----TTCAGGCTTTCAA
s caeRem4.Crem_Contig24   315194 170 -  1162296 TTCCCTCTCTTTGTACCCcgttttccctcatttctccttctttctatTTCTCGC-GCATTATG---TGTTGACAGCCGGTTACCCGGACAACCATAGCTCG--------------CAGGGATTATGAGCAACGC--TTTT---------------TATTCTTCATT-------------ACGTTtacactttg--atttttttcattta-----ctcAGAGCAT--G
i caeRem4.Crem_Contig24 I 4394 C 0
s caeSp111.Scaffold630   5511638 179 + 20921866 ------------------------------ttcctccttctcctcgtTT-TAGC-GCATTCTC---AGTTGCCAATGGGTTACCTTGACAACTAATTCCCGCTTGAGCTTTTGCTCAGGGAGTATAACTAGTAC--TTTTAAGAAAGAAACTTGAAACTTTTAATT--------Cttggaagttt-ttctttgaaatttttttctcctagTTGCTTTCAATTTC--G
i caeSp111.Scaffold630  I 4341 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71007 636 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=51043.000000
s ce10.chrX               481442 181 + 17718866 CTTTGCAG-----------AATGAAATTAAAACTATCGGCGTCTCGGAAAACACGCCACACAGAAATGGTTTGTGGGGTGGGATGGATAGGCACCGAGGCCATATTGTCGGCAGCCGATGATCATGTTTTTCTGCTAACAAATACCGCCACAAATGAATCTCAACAAATTTTGAATATGCCGGAGTGAGTTT--------
s caeRem4.Crem_Contig24   315364 192 -  1162296 TTTCagagaatcatcaaaaaatgaagttgaaaCTATCTGCCTCTCGAAAAACCCGTCATACGGAAATGGTGTGTGGTGTTGGGTGGATTGGAACAGAATCTATTCTTTCCGCCGCTGACGATCATCTTTTCTTGCTGACCAATACGGCAACAAATGAGTCTCAACAGATTTTAAGCATGCAAGAGTGAGTTT--------
i caeRem4.Crem_Contig24 C 0 I 39
s caeSp111.Scaffold630   5511817 191 + 20921866 TTTTACAG-gttgtttaaaaatgaaactgaagtTATCTGCTTCTCGTAAAACCCGACACTCGGAAATGGTTTTCGGAGTTGGATGGATTGGAACGGAATCTATTTTATCTGCAGCAGATGATCATATATTTTTACTAACGAATACGGCAACGAACGAGTCACAGCAAATTTTAAGCATGCAAGAGTAAGTTT--------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       71643 189 +   258924 -----------CCCTGAGAAATGAAACTAAAACTATATTCTTCGCGAAACACACGGCATTCCGATATGGTTTGCGGTGTGGGGTGGATTGGCACTGAATCGATTTTGTCCACAGGAGATGATCATAATTTTTTACTAACGAATACAATAACCAATCAGTCGACGCAGATTTTGAATATGCAAAGgtaagtttatttattt
i caeJap4.Scaffold54    I 636 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=546.000000
s ce10.chrX               481623 2 + 17718866 TT
s caeSp111.Scaffold630   5512008 2 + 20921866 TT
i caeSp111.Scaffold630  C 0 I 21
s caeJap4.Scaffold54       71832 2 +   258924 tt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   315556 39 -  1162296 I

a score=635.000000
s ce10.chrX               481625 11 + 17718866 TTTTCATCATT
s caeJap4.Scaffold54       71834 11 +   258924 tttttgttatt
i caeJap4.Scaffold54    C 0 I 12
e caePb3.Scfld02_254       81548  0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5512010 21 + 20921866 I
e caeRem4.Crem_Contig24   315556 39 -  1162296 I

a score=0.000000
s ce10.chrX               481636 898 + 17718866  
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       71845  12 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5512010  21 + 20921866 I
e caeRem4.Crem_Contig24   315556  39 -  1162296 I

a score=829.000000
s ce10.chrX               482534 21 + 17718866 AATTTTAAAAAATCAGAATTT
s caeJap4.Scaffold54       71857 21 +   258924 aattctaaaaaaaaatgtttt
i caeJap4.Scaffold54    I 12 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5512010 21 + 20921866 I
e caeRem4.Crem_Contig24   315556 39 -  1162296 I

a score=420.000000
s ce10.chrX               482555 4 + 17718866 TATA
s caeSp111.Scaffold630   5512031 4 + 20921866 tatg
i caeSp111.Scaffold630  I 21 C 0
s caeJap4.Scaffold54       71878 4 +   258924 ttta
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   315556 39 -  1162296 I

a score=49490.000000
s ce10.chrX               482559 307 + 17718866 TTCCAGAACTTTCTTCCCCACGAGTCTTCATATTTTTCCACGTTCCCAAACTAAAGGTGGTCAAAATGATGTGTTTGCAGTTTCAACTTCTGATGG-TAAGTTTTTCTTTTGTATTTTTTTTTCATTCTTAACGAAAATGTATACGTATGGGTTTTGTTT---CAAACCCATAAACACCGAAAATGAATTTCAGGAAAGATAAACATACTTTCGCGAAACGGAAAAGTTGAAAACATGGTAGATGCTCACAACGGAGCAGCTCTCTGTGCTCGATGGAATTCTGATGGGACTGGATTGTTGTCAAGTGGGT
s caeRem4.Crem_Contig24   315595 260 -  1162296 tttcaggtCATTCTACCCTACATCTTTACATATTTTCCCTCGGGCTCAAAATAAAGGAGGCCAAAACGATGTTTTCGCAGTTTCCACATCAGATGG-TAccgttttg------aatgttttctggcttataaaa---------------------tattt---aaaaa-------------------attt-agggAAGGTCAACATTCTTTCTAGAAgcggaaaaatggaaaaaatagtAGACGCTCATAATGGAGCTGCCCTGTGTGCCAGATGGAACTCAGATGGTACTGGATTGTTAACATGTAAGT
i caeRem4.Crem_Contig24 I 39 I 441
s caeSp111.Scaffold630   5512035 256 + 20921866 tttcagAACGTTTTTCCCAACTAGTTTGCATATATTTCCACGGTCGCAGAACAAAGGAGGCCAAAATGATGTTTTCGTGGTTTCAACTTCGGATGGTTAgagttttc------tcttccttttggtttat---------------------------ttt---gaaac-------------------gtTTCAGGCAAAATTAACATACTCTCAAGAAGTGGAAAGCTGGAAAAAGTTGTCGATGCTCATAATGGAGCTGCACTGTGCGCAAAATGGAATTCCGATGGAACCGGGCTCTTGACCTGTTAGT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       71882 252 +   258924 ----agcAATTTCTTTCCAACTTCCCTTCATATGTTCCCA------CAAACTAAAGGAGTTCAGAATGAAGTTTTTATTGTTTCGACTTCCGATGGTTAGTTAATTA---------GTTTTTCCACTTAT---------------------------TTTCGCCAAAATTACTG-------------GTTACAGGAAAAGTaataattttgtcgaaaaatggaaaaatcgaaaaaaccatcGATGCACATAATGGCGCTGCTCTCTCGGCTCGGTGGAATTCTGACGGATCTGGATTTTTAACAAGTATGT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=-8079.000000
s ce10.chrX               482866  40 + 17718866 --------------------------------TC-------------AATACTAAAATTTCAAA----AAA-------------------------------GTATATAAAGAA-------------------------AGTCAG
s caeSp111.Scaffold630   5512291  33 + 20921866 --------------------------------TC------------------TTATATTTTGGGTCTCata-------------------------------gtatttt-------------------------------ttcaa
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       72134 141 +   258924 ATGATAACACgtaaccccgcccacttgaTCGTTCGCGACCACCTAAGAACactgctatttgaag----agacgcagacaaaaaagggatagatagctcactcgtgttttcatgatgcaactcgtttgaaaactaAACTtactcaa
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   315855 441 -  1162296 I

a score=127684.000000
s ce10.chrX               482906 506 + 17718866  
s caeRem4.Crem_Contig24   316296 487 -  1162296  
i caeRem4.Crem_Contig24 I 441 C 0
s caeSp111.Scaffold630   5512324 563 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       72275 436 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=505.000000
s ce10.chrX               483412 16 + 17718866 TTCATTTCAAATTTTT
s caeRem4.Crem_Contig24   316783 16 -  1162296 TTCTGGTTATATTTTT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       72711  0 +   258924 C
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5512887  0 + 20921866 C

a score=-1135.000000
s ce10.chrX               483428 101 + 17718866 TCAAGGCCAACATCGGCTATTTAAGCTAACATTTTCTCTGCTGCTCCACAAAAATACTGAACTAATTGCCCTCCATGAAAATTCATTTTCGATTTACCAGC
s caeSp111.Scaffold630   5512887  32 + 20921866 ---------------GCTATTT---CTGACATTTGTTC----------------------ACTA-----------------------TTCGATTT------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       72711   0 +   258924 C
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   316799   0 -  1162296 C

a score=-3420.000000
s ce10.chrX               483529 55 + 17718866 AAATAAAAAGAGCAATTTATACTACTTTAACATCAAAAAAAAGTTTCAAAATTAC
s caeSp111.Scaffold630   5512919  1 + 20921866 ------------------------------------------------------C
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       72711 20 +   258924 AGATAAGAAGA-CAATTTTTA----------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   316799  0 -  1162296 C

a score=39487.000000
s ce10.chrX               483584 134 + 17718866 AGTGGTCTCATTCTTTGGAGAAAATGAATGCTGGATCTGTGATGGCACTCAGTTGGTCACCTGATGGAACTCAATTAGCCGTTGGCACTGCTGCTGGGCTTGTCTTCCATGCACATATTATTGATAAGTAAGA---------T
s caeRem4.Crem_Contig24   316799 143 -  1162296 AGTGGTCTCACTccctggaaaaaatgaattctggCTCAGTGATGTCTATGGCTTGGTCACCAGATGGAACACAGTTGGCAGTCGGGACAGCAGCTGGACTAGTCTATCACGCACACATTGTTGACAagtattggttttttttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5512920 143 + 20921866 AGTGGTCTCATTCCCTTGAGAAAATGAGCTCTGGCTCTGTGATGTCTTTGAGCTGGTCACCGGATGGTACACAATTAGCTATTGGAACGGCTGCAGGACTCGTCTACCATGCTCACATTATTGACAAGTAAGGTTTTCAACTT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       72731 134 +   258924 AGTGGTCCCATTCTTTGGAAAAGCTGAATACGGGCTCGGTTATGTCAATGAGTTGGTCTCCAGATGGTACACAATTAGCGGTTGGCACTGCAGCTGGGATTGTGTTCAATGCGCATATAACTGACAAGTTAGTT---------
i caeJap4.Scaffold54    C 0 I 465
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=-5495.000000
s ce10.chrX               483718 34 + 17718866 CATAGGGATGATTTATTCATTACT------AATTA--------------------------GAAAA-----------------
s caeRem4.Crem_Contig24   316942 22 -  1162296 c-------------aaactttacc------aataag-------------------------gaaaa-----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5513063 81 + 20921866 CTTGGGGGCGG--GAGACTTGACCGCGTATAGCAGGTCGCTCGTgtatttttcgagtttcaGAGAACGTGTCtcaaatccttt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       72865 465 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=83239.000000
s ce10.chrX               483752 304 + 17718866 TTCCAGGAGACTGACTTATGAAGAATTTGAAATTGTTCAAACCCAGAAAACCGTTATAGAGGTTCGAGACGTCAGCAGTGAAGTTTCCCGAGAAACTCTCGAAACGAAAGAAAGAATATCGAAAATCGCGATTCTATATAAGTATCTGATTGTGGTCACATCATCCCATATCTATATTTACAGGTA------TGATTTGAAAAGCAAAC---------------TAGCCTC--------------CTATTTTTGT--TTTCAGCTCCAAAAACTGGAATACTCCCACTATGATCGAGTACAATGAGAGAACTGTGAATATCATTGTGCAATGTGAAAAGTA
s caeRem4.Crem_Contig24   316964 304 -  1162296 tttcagacgacTAACTTATGAAGAGTTTGAGATTGTTCAAACTCAGAAAACTGTGATTGAAGTGCGGGATGTCAGTAGTGAAGTGTCAAAAGAGACGTTAGAAACAAAAGAGAGAATATcgagaatttcaattttatacaAGTATCTGATTGTGGTCACATCGTCTCAGATTTATGTGTACAGGTA--------------AGTGAATAA---------------AAATATC-----CTCAGCAAATTATTTATA---TTGCAGCTCCAAAAACTGGAATACTCCAACCATGATTGAATACAGTGAGAAAACTGTAAATATTATTGTGCAGTGTGAAAAGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5513144 300 + 20921866 tttcagacgTCTCACGtatgaagaatttgaaattgtgcaaactcaaaaaacagtGATCGAGGTTCGTGATGTAAGCAACGATGTGTCAAAAGAAACTCTCGAGACAAAAGAACggatttcaagaatttctaTTCTTTATAAGTTTTTGATTGTGGTCACTTCTTCACATATTTACATTTACAGGTAATTTGCTCAGTtgtaatgaaaaa---------------aaaggtc--------------------------ttttagctcaaaaaattggaatacGCCGACCATGATTGAATATAGCGACAAGACTGTAAACATTATCGTGCAGTGcgaaaagtg
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       73330 327 +   258924 tttcagACGCCTAACCTATGAAGAGTTTGAATTaattcaaaccaaaaaaacagtAATTGAAGTGAGAGATGTGAGCAGTGAAATATCCCGTGAAACACTGGAAACCAAGGAAAGAATTTCgcgaatttcaattttatatCGACACCTCATAGTCGTTACGTCGTCGTATATTTACATCTACAGGTA--------------AAcagaaaacgttttttttttttcaaatctcaacttttttgttatttatttatttaattacaGTTCAAAAAACTGGAACACCCCCACAATGATAGAGTACGCCGACAAAACTGTAAATATAATAGTACAATGCGAAAAGTG
i caeJap4.Scaffold54    I 465 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=273.000000
s ce10.chrX               484056 1 + 17718866 A
s caeRem4.Crem_Contig24   317268 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 37
s caeJap4.Scaffold54       73657 1 +   258924 A
i caeJap4.Scaffold54    C 0 I 26
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5513444 0 + 20921866 C

a score=0.000000
s ce10.chrX               484057 416 + 17718866 CGTCTATTGAATGTTTTTGTACTTACAATTAGTAACTTAATAATGCAACAAAACATTTTTACAGAAACTGATAATTTTTGCTACAAACGCTATTAATTGAAATAATGGTGATTGCGTATTATTGCCCCACATTAATCAGTATTTGTTAATTTCATGTTGGGAACCAAAATTAAAATTTTTACAAACTTGTATGGGTTCATATTTTTAAAACATTGCAAGACATTCAGACATTCTCCATCGCACAAAAATCTTTAAAAAAATAAAATTTCAAATTGGCAAACTACAAATTTTTCAATCATCTTTTAAACCAACTGTTCACAAAACAAACGATTAAAAAATTCCGTTTTCTTCAAATTTTTTTTTGTACGTTTCAGCAAGTTATCAAAATTTGACGCGAATTCTTAATTATTAAAGTT
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       73658  26 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5513444   0 + 20921866 C
e caeRem4.Crem_Contig24   317269  37 -  1162296 I

a score=323.000000
s ce10.chrX               484473 46 + 17718866 ATTTTCAAATCATTAGACTTCATAATTATACCAGCATAATGTGTGT
s caeSp111.Scaffold630   5513444 36 + 20921866 agtttcaaGTTGTCATCCCGCACA----------TATATTTGGTGT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       73658 26 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   317269 37 -  1162296 I

a score=-185.000000
s ce10.chrX               484519 7 + 17718866 ATAACTT
s caeSp111.Scaffold630   5513480 1 + 20921866 ------T
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       73684 7 +   258924 aaatgtt
i caeJap4.Scaffold54    I 26 C 0
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   317269 37 -  1162296 I

a score=197367.000000
s ce10.chrX               484526 785 + 17718866  
s caeRem4.Crem_Contig24   317306 741 -  1162296  
i caeRem4.Crem_Contig24 I 37 C 0
s caeSp111.Scaffold630   5513481 774 + 20921866  
i caeSp111.Scaffold630  C 0 I 43
s caeJap4.Scaffold54       73691 912 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=341.000000
s ce10.chrX               485311 4 + 17718866 GAGT
s caeRem4.Crem_Contig24   318047 4 -  1162296 ACGT
i caeRem4.Crem_Contig24 C 0 I 36
s caeJap4.Scaffold54       74603 4 +   258924 GGGT
i caeJap4.Scaffold54    C 0 I 61
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5514255 43 + 20921866 I

a score=0.000000
s ce10.chrX               485315 503 + 17718866 GAATGTTTTGAAAATGTAGATATGTCAAATTCATTCAAAATGCCGCACGGCGCATCTCACGTCTTTTGTGTAGTGCGTTTGGAATCAATAAAATATCATTCCTTTTATACAAAACAGTGACCGTTTGTTGACTATGTCCAAAATGGGCGTAGCCGAAcatcgtggcgagacccttcgtggtgatacccattgtggcgagatccgtcgtgatgagactcatcgtgataagactaaaaaatattgacaaaaaattcaaattttttgagaaaacaaatttttgtggaaatctcaaattttctaagcattttttggtggaaaattcaaattatctgagaaaaaaagatttggcgagaaattcaaattatctgagaaaaaatggcgggaaattcaacttttctgagaaaagttttttggcggaactataaaatccatgaaatagttagcgggattaatttTGGGTGTAATGTATAAACGTGTTGCTATAAATGACCTATTTATCAAAA
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       74607  61 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5514255  43 + 20921866 I
e caeRem4.Crem_Contig24   318051  36 -  1162296 I

a score=57.000000
s ce10.chrX               485818 3 + 17718866 TTG
s caeJap4.Scaffold54       74668 3 +   258924 ttc
i caeJap4.Scaffold54    I 61 C 0
e caePb3.Scfld02_254       81548 0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5514255 43 + 20921866 I
e caeRem4.Crem_Contig24   318051 36 -  1162296 I

a score=80140.000000
s ce10.chrX               485821 272 + 17718866 AGAATGACACAATGTGGGCGACTTTTGCTGGATTAGCTGTTCTCCACAAAAATATGATCGTTATGGAAATTGCCTATGCAGCATTGGAGGATGATGAAAAAGTTTCCCTGATCAACGAAATCAAAGACAAAACCGATAAAGAGACTCGTCAAGCTATGCAAGTGGTATTAACTGGAAAGCTCGCAGATGCTGATGTCTTGCTAGAAAGAAGTGGACTAAGCTTTCGCTCGCTTATGTTGAATATACAAATGTTCAAGTGGAAAAGGC-------AATTC
s caeRem4.Crem_Contig24   318087 272 -  1162296 AGAACGATACTCTCTGGGCAACACTTGCTGGTTTAGCTGTGATTCATAAGAATATGATCGCGATGGAAATATCTTATGCTGCACTGGAAGATGATGAGAAGGTGTCATTGATCAATGAGATAAAGGATAAAAGTGATAAGGAGATCCGTCAAGCTATGCAAGTGGTGCTAACCGGAAAATTGGGAGATGCGGATGTGATGTTGGAAAGGAACGGACATGGGTTCAGATCATTGATGCTGAATATTCAGATGTTCAAATGGAAAAGGT-------AATTT
i caeRem4.Crem_Contig24 I 36 I 129
s caeSp111.Scaffold630   5514298 279 + 20921866 agaacGAAACGTTGTGGGCGACTCTCGCAGGACTCGCGGTCATTCATAAAAACATGATTGCCATGGAGATTTCATATGCCGCGTtggaagatgatgaaaaggTTGCATTaatcaatgaaataaaagaCAAAAGTGATAAGGAAACACGACAAGCTATGCAAGTAGTCTTGACTGGAAAACTAGCTGATGCGGATGTTTTGTTGGAGAGGAATGGTCATAGTTTCCGAGCATTGAtgttgaatattcaaatgttcaaatggaaaaggtTTGTGAAAATAC
i caeSp111.Scaffold630  I 43 I 9
s caeJap4.Scaffold54       74671 268 +   258924 agaatgACATTCTCTGGGCTACATTCGCTGGACTAtcaatttcatacaaaaacaTGATCGCCATGGAAATAGCATACGCTGCATTAGATGATGATGAAAAAGTCTCGCTGATATCTGAAATAAATGAcaaaagtgataaagatgTCCGCCAAGCGATGCAAATGCTACTGACCGGAAAAGTGAACGATGCAGATGTTCAGCTTGACAGTCATGGAGAAAGTTTTAAAGCGTTAATGTTGAATATTTACATGTTTAAGTGGAAgcggt-------a----
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=2142.000000
s ce10.chrX               486093 210 + 17718866 ATAAT--------------------------------------------CAAATGTTT----------------TTTTTTTAACTTGAAT--------------------------------------------------------------------------AC-------------------------TTTCAGAGCACTCGAACTTGGCTTGAAAAATAAACAGTGGCTCGAAATTGTAATGGGATATCGTGAGAAATACTTGAAGAACTGTGGACAAAAAGAGACAGACCCTCTTTTTTTAAAGCACATGTCAGAGGT--------------------AAACCAACTTGTG-------------------AAAGACAAAAC--------------ATCAAAAACTTT-----------TTTGAAAA------TT
s caeRem4.Crem_Contig24   318488 363 -  1162296 ATAATTAAAGTTTCATGGCGATTTGatgctaaaaattttttattttttcaaaaaaatagaggcgTCGGCATAAGTTGTTAGAGTTGCGATTTTCCATGTCTTGAAATTTGAGCAGTTATGTTTAGATGTGTATATTTGGTCTAAAGAACTGGTCATAAGACCCAACTCACTACCTCTATCTCTATCCTCACTTTCAGAGCTCTGGAGCTTGCAACTATGAACAAACAATGGTTGGAAATTGTCATGGGATACCGAGaaagatatctgaaaaactgtGGGCAGAAAGAAACGGACCCCCAATTCTTGAAGCATCAGGCGGAGGT--------------------ATACTAAC-TGTA-----------------------GTACAAC-------------tgtaaataattgt-----------tttccaaa--------
i caeRem4.Crem_Contig24 I 129 C 0
s caeSp111.Scaffold630   5514586 294 + 20921866 ATAAT--------------------------------------------AAGAAAGCA----------------Cttctaaaatttgaattttcc---------------------------------------------------------------------aattatttcctct--------------ttttaGAGCGCTTGAAataggtttcaaaaacaagcaATGGCTGGTAATCGTTATGGGTTACCGGGAGAAGTACCTGAAAAACTGTGGTCAAAAGGAATCGGATCCAATGTTCTTGAAACATATGTCTGAGGTTCG-TCATGcgatttttttgacagtctc-tgtatcttttttcaagaatggATTGGGGTAGACCATTATCTCTTATGTGTTAAAAGATGTGCCTTTTtaactttcaaaacaaaGTTT
i caeSp111.Scaffold630  I 9 C 0
s caeJap4.Scaffold54       74939 231 +   258924 ----------------------------------------------------------------------ttttttttgctaatttaaaa----------------------------------------------------aaaaaaaggagccCGAG-----ATT------------------------TTTCAGAGCGTTGGAACTTGCTGCTAAAAACAAACAGTGGTTGGAAATTTTAATGGGGTACCGAGAAAAGtatctcaaaaattcaaatcaaaaagaaacaaatccGGAATTTGCTAAATTTATGTCCGAGGtctgtttttgttattt-----taatcgacttgca---------------------cGACAcagc--------------accccagccttc-----------ttccaaaa------tt
i caeJap4.Scaffold54    C 0 I 236
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=-419.000000
s ce10.chrX               486303 37 + 17718866 TCAATTTACAATACATATTATTTCCAGATACATTTTA
s caeSp111.Scaffold630   5514880 27 + 20921866 CATGGTCACAATAAG----------AGAATTATCGTA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       75170 236 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   318851  0 -  1162296 C

a score=14667.000000
s ce10.chrX               486340 107 + 17718866 TTTTGAATA-----TGAATAGCTTATT----------TTTCAGGTCGAAATCGACTGGGTGCATATACGAGAGCTGATTGCCGCGGAAAAAGCTAAAGGAAACAATTGA------CTCCATTTTTGTA
s caeRem4.Crem_Contig24   318851  81 -  1162296 -------------------------------------TTCCAGGTTGAAATCGACTGGGTCCATATCCGAGAACTGATTGCTGCTGAGAGAACCAAAGGGAattattga----------tattatatt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5514907 117 + 20921866 GCGTCAATG-----AAAATTATCAActcatctcaatttttcaggttGAAATCGACTGGGTCCATATTCGAGAACTTATCGCCGCTGAACGAACTAAAGGAAATTACTAA------GAATTGGTTCATC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       75406 118 +   258924 -ttttgatgttgcAAAAGTTATTTGTTTGG-------TTTCAGGTCGAGATTGATTGGGTGCACATTCGCGAGCTCATATTAGCTGAGAAAAATAAAGGGAATTTCTAatcatatcaattttttta--
i caeJap4.Scaffold54    I 236 I 674
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=1858.000000
s ce10.chrX               486447 12 + 17718866 TTTGTTTGATGT
s caeRem4.Crem_Contig24   318932 12 -  1162296 tttgtgtgatat
i caeRem4.Crem_Contig24 C 0 I 5497
s caeSp111.Scaffold630   5515024 12 + 20921866 TTCCTCTGAtgt
i caeSp111.Scaffold630  C 0 I 2871
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       75524 674 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I

a score=0.000000
s ce10.chrX               486459 376 + 17718866 ACCCATTCGAATTGTTATAATTTACTCAAAAAATTTCTAATTTCaagacagcagggcagaagctagaaaaaattgctccgagttcgagcacttggggcgatcgaaattttttgaaaatatcatcaaatgaaagTAGGACTTATCGCCACCCCTGATATATAATGAGGACACGATTTCTGAAAGCTCTGAGTAGTTTTGAAAATTTTAAAAATGTTTTTCAATTTTCCAAAAGCTCCGGAACAAGGATGTCATCACGGTAGCATAGTGTTAATGAAACAAAAAATCAACAAATAAGAACACTTTTTTCCAGATGTAAATTTTACACATTTTTCTCCATCTTACGGTTATATTCCTTTCTAACAATTTTCCTAACAAT
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       75524 674 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeSp111.Scaffold630   5515036 2871 + 20921866 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=2024.000000
s ce10.chrX               486835  99 + 17718866 GGTCCATATATCTTTTGGTAGCCGGAGAGAAAAACTACTAGCGGCATTGACA---------------AAACAGTTTTTATCTATACAATAAATCTGGGCTGGGAATAAATTCGG
s caeSp111.Scaffold630   5517907 109 + 20921866 GGCCTATATATCTT-----AAGCACAGAGAAAAACCGCTGGCGACAAAGACACGCgacaatgaaaataaataaaggTTATCTGAACAAGAGAtctctgaagaaaaagactaTGG
i caeSp111.Scaffold630  I 2871 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       75524 674 +   258924 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=-7776.000000
s ce10.chrX               486934 164 + 17718866 CACCTCACTCTTCCTAAAGAATTATCTTTTA---------AAGTACAGCTGTTTTTTATTTCAGACAAATGTCTTAAATATATAACTGATCTTAAATAAATTGAATACTCTTGTTTCTATCAATTGTGATCAGGATGTTTCTCAAACAGTCAGTCATCATTTCTAAGTTAATC-
s caeSp111.Scaffold630   5518016 114 + 20921866 GAATATAGGTTGT-----ggattgt--tttg---------aaaaacgg---------atTCCAGCATAATGTAATAAAAATGTAC--------------ATTTGATATTC----------CAAC---------GAAATTTCCTACATATCAGATTATTATTGGTG-GTCAGTC-
i caeSp111.Scaffold630  C 0 I 3
s caeJap4.Scaffold54       76198 161 +   258924 CGCCATATTCACCCCAA-AAATGGTTATTTATGATGCGTTAAAGAAAGCGGTTTCATACCATAGCTGAGTGATTTGTAattaaaa-cgatgaaaaacaattcaaatcaAC---TTTTAATCACTTGGTCTCT-----TTTCTTTTGCAATTACTAAT--TTTCTA-GTGTGTCT
i caeJap4.Scaffold54    I 674 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e cb4.chrX              21020446 4140 - 21540570 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=6909.000000
s ce10.chrX               487098 96 + 17718866 AAGAAAATTCCAAAAGGGATTATAACATTTCTTGCGCCGTTTTCTTTCTTG--ATCCCCCCGAAATCACTGGAAGGCA---CTATGATTCAACTAACATTT
s cb4.chrX              21024586 98 - 21540570 aaagaaattccaaattggaTTAAAACAATTCTTTTCATTGTTTCCTTGTTGTCTTCTTTCTGTACTCGCATCCAGGGGTATGTGTGATTCAGATAACA---
i cb4.chrX              I 4140 C 0
s caeSp111.Scaffold630   5518133 68 + 20921866 GAGGAAATTCCAAATAGGATTAAAAccattctcttctccttttc---------------------------ccaGAGA---ATGTGATTCAGATAACA---
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold54       76359 67 +   258924 CGGAAAATTCCAAAAGGGATTGAAACA----------CACTTTCTTTCTT---------------------CCCGAAG---TTCTAATTTGGATAACATTT
i caeJap4.Scaffold54    C 0 I 931
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=-5123.000000
s ce10.chrX               487194 128 + 17718866 TTCTTTCTTTCCTGCAGTACATTCAATTTGAAATACAATTAACTTCACATTTTATTATACAATTTTGTTTTTTGAATACGGGGAGCGCTTTGCCGAAAAAAGTTTATAG---CCGCTTTTTTTTTCAAAAA-----------------
s cb4.chrX              21024684  93 - 21540570 -------TTTTCCGCA--------AAGGCCACATTTGG------TTACGCCTTTTCCCACA-------------AATAT----AACACCAAGTGGgaaaattttcacagtttccgattttttttgtggaaa-----------------
i cb4.chrX              C 0 I 89
s caeSp111.Scaffold630   5518201 101 + 20921866 --------CTCCGGCG--------AATGTGGAAGGAAA------CCACGGCTATTCATGCA-------------AATAC--------TTTTGTGTG----TTCTGCTGGTTAACGGATTTTTGTGAAGAAgccaaaactttttttaaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=288.000000
s ce10.chrX               487322 80 + 17718866 TTGATAA----AAACTTGTCATTC--------TATTATATCACACATTTCAACTGACAAC---AAATCC---CCTGAGACTTCAAGATTTAATGAATA
s caeSp111.Scaffold630   5518302 98 + 20921866 ttgaaaatgctGAATTTGACATATCCCAAGATTATTTTCTCCAATACATCGACTGCGATTCTTGAATCCAATCTcgacaatttcaaaaataatgaatg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21024777 89 - 21540570 I
e caeRem4.Crem_Contig24   318944 5497 -  1162296 I

a score=2351.000000
s ce10.chrX               487402 17 + 17718866 CATCCAACCATCAAATC
s caeRem4.Crem_Contig24   324441 17 -  1162296 CATCAATTCCTCAAAtc
i caeRem4.Crem_Contig24 I 5497 C 0
s caeSp111.Scaffold630   5518400 17 + 20921866 cCTCCTCCCATCAAATC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21024777 89 - 21540570 I

a score=13984.000000
s ce10.chrX               487419 193 + 17718866 AATAAATTACACCTTTCATATTCAC---TTTTTCTAGAACAATTAGT--TCCTTACA------------------------------TTCAGAATTTCCTTGGCCCA-----------TCG---CAGTATAATTTCGAGTTTGAAAAA----GACCAAGA-------------------AAAAAGAAACACCAT--CGAAGAAAAGTAAACTATCACATTTCGTGTCTGCTGCCT---CGCCTCATCGAATTATT---------GGATGAGGTCAGTTA
s cb4.chrX              21024866 222 - 21540570 ----GATTAATTTGATG-----------TTTCATCAAATCCTTGAAT--CTCtacca--------------tttttttca--taactttgaaaa--tccttGACCCGGCCATCATTTCTTGTTACAATGTAATTTgccacgaaaaaaaaagcgtCGAAGC-------GTGCGTGGTGAGGAATGAGAACGCCATCATTGAGAATAGAAAACTAACACTTTTTGAATCC--CAGCA----AACTCATCAAACTATT---------GGATGAGGTCAGTTA
i cb4.chrX              I 89 I 104
s caeRem4.Crem_Contig24   324458 199 -  1162296 --tatattcaaattttt-----------tttgtctggaTACTTGAAA--TTCTTC-----------------------------------------TCCTTGACCCA-----------TCGTCTCAATGTAATTTGctaggaaaaaaatgatgacgaAGTCGGgagaagggggggggggggagaagAACACCAT--TCGAGAAAAGCAAACTATCACAATTTGTGTCT--CGCCGCTTCGCCTCATCGAACTGTT---------GGATGAGGTCAGTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5518417 252 + 20921866 AACTAATTACAGTTTTGAACATCTCGCTCTCTACTATATAATTAGATGCATCTTCCAGTGTCATCatacgttttttttcaagccatttttaaaagttccTTGACCCA-----------CCA--GAAATGtaattttctatt--cgaaATGATGACGAAGA-----GCGTTGACGAGAACGAAGTCGAACACCAT--TGAAGAAAAGTAAACTATCACATTTTGTGTCT--TGCAT---CGCCTCATCGAACTGTTTGAGGGAGAGGAGGAGGTCAGTTA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I

a score=-9995.000000
s ce10.chrX               487612 191 + 17718866 TGGCAGTGAAGCAGTTAAATTTCACTTG-------TACCTTCGTTTTTCATTTTAATTGTGTATTGATCGCTCGGAAAAGTTGTTTGAAACAAACTGAATTTGTTTTCGTTGAAAAAGTTATATTTGTTATACTTGGTTTTTTATTCAACATTCAAAAAAACATTCAAAATTCTCTGTTTTTCCCACGCGATAAAGAT--------------
s caeRem4.Crem_Contig24   324657 116 -  1162296 TG-----GTTGGTATACATGTACTgatggaagaaaaaacatctactttc----------------------------aattttct------gaactt--------tttgttg-----------------------cgatttgtgttgaaaaatcagaaa-----tca-------------tgagca--------aaatcttctttttctgta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5518669 131 + 20921866 --------TGGGGGTAAAACTTCTTTTGCACTATatactttctcttttc---------------------ttct---tactttcttcaagaaaacag--------tcttttgaaa-----------gtta-agaacatttttttttgaataatgaaaaa-----tta----------ttttaaacataaaatagaaat--------------
i caeSp111.Scaffold630  C 0 I 37
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025088 104 - 21540570 I

a score=-840.000000
s ce10.chrX               487803 84 + 17718866 CCACAAACCGACGCCCTTATAGCTCAGTGGTAGAGCGTTGGTCTTGTAAACCAAAGGTCCGTAGTTCAATCCTGCGTGGGGGCA
s caeRem4.Crem_Contig24   324773 23 -  1162296 -----------------tatagttcag--------------------aaaccaaaaatcc------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025088 104 - 21540570 I
e caeSp111.Scaffold630   5518800 37 + 20921866 I

a score=-14656.000000
s ce10.chrX               487887 338 + 17718866 TTTCTTTTTCCATT------AAAAAAGGCTGAAATTCGTTTACTTTTGTATATGAAAGCTAGATGTTTTAATCaaaattctctagaaacatagtattacattccctatcagtcttgcaattatgattggtaagtttatctgagaagtattattacaaccgtgctaatagcatgaatacagtaGTGGTACAAAACCAATAGCGCTCAAAGAATATCAAATTATCACAAGAATCAGATAAGGAAGCGTAATTTAATGACCTCCTGTTATTTACTTTTGCTTAAATTTTAAATTCTCATCACAAGCTCATAAAAAATTATTATTTTCGAAAAGCCGTCAAAAATCCC------
s caeRem4.Crem_Contig24   324796 178 -  1162296 --------------------AACAGAGACTAAACGTC-------------------CACTGACAACTTTTAT-----------------ACAG-----------TGACCAATTTTCTAGT-GCTTT-------TTATTCTAA--AGT--------GACCATGTT--------------------------ACACAAACCGAGCCTAAGAACTGAAAATCTATTGCAA---------ACGgaaatacaattttg---------------------------------aaattgt----------------aagCATTTCACttactaaaatt---caaaaatccatcTCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5518837 192 + 20921866 CTTCATTTTCCGGTCTAGCTAgctaaga--aaaaatc-------------------aacaaagtgttttcaa-----------------ataattttgcTTCACTGAGATACTGTATaatcactct-------tttttcaaatcaga--------gaatgtgtt----------------------ttcaaaaaaaactgggaTGAAAAACC-------------------------TGGGagaaaactcaga---------------------------------aaattatc--------------aaaacggttgatttttgaaaaac---tcggaagc--------
i caeSp111.Scaffold630  I 37 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025088 104 - 21540570 I

a score=19940.000000
s ce10.chrX               488225 193 + 17718866 --------AAAATTCAAAAACGGCCAACCCCCGGTGC--GACTCTGATTAATC-----ACTGTCTCCTCCCCCGTCACCCTCCTTTTCTTTCACGTCCTTGGTAATTTTCATATGTA--------TGTTTGCTTGCGCACA----------------CATGGCGAAAAAGACAGTTTCATAACCAGAAAGCGT-ACGCCAATTTCTTAAACTACTTTTCCAAATGACGTTT---TT
s cb4.chrX              21025192 178 - 21540570 --------aaaattcatttttcacgaCCTCCTGGTGT--GAGGTTGATAAATGAGTCAACTGTCTTC------------------TTCCTTCACGTCCTTGGTAATTTTCATATGTA------GAGGTTTGCTACCCTACACGCGCCACAACAGATGCATAGGGAAAACGACA--------ACCAA--------CTACAATTCATTTAAAGTTTT-----ACCAGACTTTT---TT
i cb4.chrX              I 104 C 0
s caeRem4.Crem_Contig24   324974 182 -  1162296 -------------------CTGACGACCCCCCGGTGTGCGGGGTTGATTAATGAGTCAACTGTCCCCTCA-----------TCGTTTCTTTTACGTCCTTGGTAATTTTCATATACATATATCTATGTTTGCTTGCGCACACACGT--GTGTGTCTGTATGGCGGAAATGTCAATGAC---ACCAT--------ATGCCAATTTCTTAAACTTCT-----------CTTTTCACCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5519029 190 + 20921866 agaatttaaaaatccatCTTATAAGACCCCCTGGTGT--GGGTTTGATTAATCACTCAACTGTCCCC-------------------ACCTCCACGTCCTTGGTAATTTTCATATATA--------TGTTTGCTTGCGTATACACAA--CCACA----TGTGGCGGAAATGACA--------GTCATAGACAGTCATGCCAATTTCTTGAAACTCTTACTTGGCAGccgttt---tt
i caeSp111.Scaffold630  C 0 I 176
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I

a score=-1046.000000
s ce10.chrX               488418 14 + 17718866 AAGACATGAGAAGC
s cb4.chrX              21025370 14 - 21540570 AAAGAGTAAAAACC
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig24   325156 12 -  1162296 AAATGGCATAGC--
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e caeSp111.Scaffold630   5519219 176 + 20921866 I

a score=582.000000
s ce10.chrX               488432 31 + 17718866 CAGGAAAAACGCGGTAAAGTTGTTGCGGTAA
s caeRem4.Crem_Contig24   325168 20 -  1162296 CAAG-----------GAAGCAGTTGCGGTAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025384 28 - 21540570 I
e caeSp111.Scaffold630   5519219 176 + 20921866 I

a score=-1068.000000
s ce10.chrX               488463 35 + 17718866 TTCTAT---------ACCAAA--CGTTTTTTTTTTTCGTTTGTCCT---
s cb4.chrX              21025412 35 - 21540570 TTTTAT---------TTAAAA--tgcgttttttgtttttttagccT---
i cb4.chrX              I 28 I 187
s caeRem4.Crem_Contig24   325188 49 -  1162296 TTTCATAACTTTCTGTTAGTACcttcccttttcttcttcctgatGTGTT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e caeSp111.Scaffold630   5519219 176 + 20921866 I

a score=1262.000000
s ce10.chrX               488498 60 + 17718866 CTGGTTACTTGTCTACCGTTCAGTT--TTTCATGTGATG---TTTAATAATTTTTCTGAGGTTTA
s caeRem4.Crem_Contig24   325237 65 -  1162296 CCGGTTTTTCACCAAACGGTCGGTTCATGTCTTTTGGTGCgttttggtagttttttaGAACTTTA
i caeRem4.Crem_Contig24 C 0 I 196
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025447 187 - 21540570 I
e caeSp111.Scaffold630   5519219 176 + 20921866 I

a score=0.000000
s ce10.chrX               488558 785 + 17718866  
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025447 187 - 21540570 I
e caeSp111.Scaffold630   5519219 176 + 20921866 I
e caeRem4.Crem_Contig24   325302 196 -  1162296 I

a score=2422.000000
s ce10.chrX               489343 15 + 17718866 AAATGTCATCTTAAT
s caeRem4.Crem_Contig24   325498 15 -  1162296 aaaagcCACCTTACA
i caeRem4.Crem_Contig24 I 196 C 0
s caeSp111.Scaffold630   5519395 15 + 20921866 AAAAGTCATCTTAAT
i caeSp111.Scaffold630  I 176 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I
e cb4.chrX              21025447 187 - 21540570 I

a score=31015.000000
s ce10.chrX               489358 305 + 17718866 ATGATGTCCAGTCAATAGTTTTCCTCAGTTTTCTAGTTT-----CC-----------------CCCCTCATCTCTTATATCGTCTGTCTTTACCAACTTTCCTCCGTCTCGA-TACAATTGTCCGACAACTTCAAGTTGTAATTACAATGTGTTTTGAAAG-----AAAAAAGTGACAAAAAAGTTGATTAAATTCTTGTTTCTGATCTGAT--TTCTTCCAACGAACACCGCCGCTTCTTCTACGTGG------------------CGTCTCAGCCGCTCGATTATGTTACTTTTGTAATATGTTTTCAA--------TTGCAT-------------------------------------------------------TTTTAGTTTCCGT-------TTTTGTTTTACCCAATGTGTGTC
s cb4.chrX              21025634 265 - 21540570 ATGATGCGCAGTCAATAGTTAT-----TCTTTCTGGTTT------------------------TGCCCTGTCT-------------TGTTCTCTTTCTGATGTTTCTCTGGA-AACAATTGCCCGACGTCTTCAAGTTGTAATTACAATGTGTTTTgacggaaaataaaaaagtgatgaaaaaGTTGATTAAATTCTTGCGTCTGATTCTTT--TTCTCC----------GGCTTATCCTTTTCC----------------------CTTCTC-------AACTTTCGGAACATTAGGAGTTTTTGTTTAG--------TCACAT-------------------------------------------------------CTTCGAACACCTCCA-----CTTCACCTTACTCTATT------
i cb4.chrX              I 187 C 0
s caeRem4.Crem_Contig24   325513 316 -  1162296 ATGATGACCAGTcaatagtttt----agttttctgGTCTAGTTTTC---ACGACGGTTTCTTATTCTTCGTCTTC-------CtcgtcttctccttttcctcctcctctcgATACCAATTGTCCGACGACTTCAAGTTGTAATTACAATGTGTTTTGAcgg-----aaaaaagtgacgaaaaagttgattaaaTTCTTGTTTCTGATTCCTTAGTTTTCT----GTAGAGGGCTTCTCCTGCTTTTAGGA--AACCAACGGGGACGGTTTCTT-------CAATTCCGTTACTATTGTAatttattt------------ccgttt-------------------------------------------------------tttcggAGTCCGGAAGTG--TTCAATCTCTTTGGACC------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5519410 378 + 20921866 ATGATGTTCAGTCAAtagtttt----ggttttctagTTATGTCTCCTGTCCGTCTGTA-----TTCCTCGCCTCCCAT----CACTTCGCCTTCGTTTCCTATTCCTCTCGA-AACAATTGTCCGACGACTTGAAGTTGTAATTACAATGTGTTTTGACGG-----AAAAAAGTGACGAAAAAGTTGATTAAATTCTTGTTTCTGATTCTGC------------------TGCTTCTTCTACTTTCTGGATGAAATGACGGT-----TTTCTC---TCATCGTTTCGGTTACTCCTGTAATTTCTTTGTCGTGCAATCTTCACTTGAAGCGtttttttACTGTTAAGACTAGGAATTGAACAATAGTCTGCCGAAAATAGTTTCTACAGccaaaaatggtttttttcttgataaatGTAAATC
i caeSp111.Scaffold630  C 0 I 115
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I

a score=-9667.000000
s ce10.chrX               489663 107 + 17718866 CCCGCTGTGAAAATCGTTT-------TAC-----AGGCATCCATCTTTGATTTCCGACTCTAATTTA-TAAAATTCCAAG----GTTGGTCC-------------------ACTTGTTCATGTCACAATTAAAAACAATGATT--------
s cb4.chrX              21025899 121 - 21540570 CACATCctgct-----ttt-------ttc-----tttcaattaatttttactTCCGCTTGTCATTTGTTAGATTTTCTAC----GACGTTTTGAATGAGAAGATAA-----ACGGCATTGTTTCAAAAGACAAATTCCGCGTCTTAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   325829 123 -  1162296 CCTACTGTGAT-----TTTT--AAGGTAT-----TGTCGTTTGCTACTGACTTCCGACTCCAATTTG-TAACCATCGCAC----GACG--------GAAAAGGTCGGTATCACCACCCTACTTCCAAATGT---TCCTTCATCCCAAAATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5519903 137 + 20921866 CCAGCTGTGAA-----TGTTTCAGGGTTTATAAATTACATTTTCCGttcatttccgttttcaattCA-TAAACTTCAAATGGTAGACGTTTTGAGATCAACAGTGAGTTTTAC----TTCTTTTCTAATTCGAATCTGTTTTTCCAG----
i caeSp111.Scaffold630  I 115 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       76426 931 +   258924 I

a score=21130.000000
s ce10.chrX               489770 47 + 17718866 TTTCAGGTGCCCGAAATGTGAGCTATGCTCAAAGTCCTACTCACCCT
s cb4.chrX              21026020 47 - 21540570 CCAATAATATCGGCCATGTGAGCTATGCTTGATATCCTATTCATTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   325952 47 -  1162296 TTACAGACACCAGCAATGTGAGCTATGCTCAAAATCCTACTTATTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5520040 47 + 20921866 GTACCAACAACAGCAATGTGAGCTATGCTCGAaaaccaacttttttt
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       77357 47 +   258924 tttcagaattCAGCAATGTGAGCTATGCTCAAACTCTTAATTATTCT
i caeJap4.Scaffold54    I 931 I 40
e caePb3.Scfld02_254       81548  0 -   193288 I

a score=2128.000000
s ce10.chrX               489817 39 + 17718866 GATGTTGTCGACAAACTTTCGGAATACATGGTGAGTGTC--
s cb4.chrX              21026067 39 - 21540570 TCTAATGTCAAATGCGATTGGGCATACTTGGTGAGTTTC--
i cb4.chrX              C 0 I 139
s caeRem4.Crem_Contig24   325999 39 -  1162296 CATGTTGACAACTATATTTCGGCACTCACAGTAAGttct--
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold630   5520087 41 + 20921866 cttcatgtCAACATTAATCGTGCATATACAGTAAGactgtt
i caeSp111.Scaffold630  C 0 I 50
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       77404 40 +   258924 I

a score=21401.000000
s ce10.chrX               489856 158 + 17718866 GCAAAAAAAGTTCTCCCcggccgggaattgaacccgggtctcgcatgtgacagacgcggatactcaccactatactaccgaGGACACATTAATAGGAAAAGACGAGAGAAAATATAAAGGCGGGATAGGAACATGTTGATAGAATACAATAAGCGCAG---------
s caeRem4.Crem_Contig24   326053 142 -  1162296 acaaaaagatttcTCCCCGGCcgggaattgaacccgggtCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACATGAGAGAAGAAACTAGGGAGGCAAGATAAGAGTAG--TGGAAA-----------------------GCAGTGATAagag
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold630   5520178 135 + 20921866 gcaaaaagaattcTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACATTGTTAATGAAGTGATGTGAGGTAGAAACGAGTGGAACAGGCG-----------------------GCAG---------
i caeSp111.Scaffold630  I 50 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       77404  40 +   258924 I
e cb4.chrX              21026106 139 - 21540570 I

a score=362.000000
s ce10.chrX               490014 20 + 17718866 GGAGGTGGTGAAAAAAAATT
s caeRem4.Crem_Contig24   326195 16 -  1162296 agagg----ggagagagaTT
i caeRem4.Crem_Contig24 C 0 I 48
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       77404 40 +   258924 I
e cb4.chrX              21026106 139 - 21540570 I
e caeSp111.Scaffold630   5520313  0 + 20921866 C

a score=0.000000
s ce10.chrX               490034 87 + 17718866 CATTGATGGCTTAAAAATTAAAACGACGAGCGTAAATTTATAAGATTCATTTGTGAAAACCTATCCGTTTTAATTTTTTTTAAAGTT
e caePb3.Scfld02_254       81548  0 -   193288 I
e caeJap4.Scaffold54       77404 40 +   258924 I
e cb4.chrX              21026106 139 - 21540570 I
e caeSp111.Scaffold630   5520313  0 + 20921866 C
e caeRem4.Crem_Contig24   326211 48 -  1162296 I

a score=-4566.000000
s ce10.chrX               490121 403 + 17718866 TTTACCACCAAAGTGTTCCGAAGTATTTGAAAATCTCTTTGAAAAAAATTCACATGAAATTTGTTCCCACTATATCAACTTTAAAATGAGTTAAACCGATGAACTCGTAATATGCCAGACATTGCGAAAAATTACTTTTTTCAGTATCCCCAGTGAGGATTCTATCTAAATACGTACATAATTATTTTTACCATAACCGAATTTAAGAAAAAAATTCCAAAACTGTTTATTTTGGTATCTTGTAAATTTTTCGGACAGTTTGACCTTTTGAGAATTAAAAAAACAATGTTAATCATGACTGTGAAG-AGAATTTTTGAAAATGTGAAGACAAATTTAATTTTACATTTAGAAAAATTTATTCATATCTACTTGAAAAATGTTTTAGTTTTAGGAGAATGTATAC
s caeSp111.Scaffold630   5520313 201 + 20921866 TTTACCTTCAGAGAGT------------------------GAAGA-------------------------------------------------------------GTGATA-------------GAGA----------------------------GAGTCTATTT---TACGCGGCTACTGCTTTTTACTACTgatgga---aagaaaaggaggcAAGGACTAT-------GGGTTATTAAAAGTTTGTTAGCTCAGCTGA-------------------------------------GTGGAGTAGCacaattgaaa----gaaaacgaattttaT---------AGAATACCATATCACTAActattct-------ttcaaatttcaagaaca-------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I
e caeJap4.Scaffold54       77404  40 +   258924 I
e cb4.chrX              21026106 139 - 21540570 I
e caeRem4.Crem_Contig24   326211  48 -  1162296 I

a score=-456.000000
s ce10.chrX               490524 26 + 17718866 TTCAACCTTAAATAGGCTCAATAAAA
s caeSp111.Scaffold630   5520514 16 + 20921866 ---------agaaatgctaaa-aatc
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       77444 23 +   258924 TTGAATCTTAAAAC--CTTaa-aaaa
i caeJap4.Scaffold54    I 40 C 0
e caePb3.Scfld02_254       81548  0 -   193288 I
e cb4.chrX              21026106 139 - 21540570 I
e caeRem4.Crem_Contig24   326211 48 -  1162296 I

a score=-432.000000
s ce10.chrX               490550 3 + 17718866 AAA-
s cb4.chrX              21026245 2 - 21540570 -AA-
i cb4.chrX              I 139 I 1
s caeSp111.Scaffold630   5520530 3 + 20921866 caa-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       77467 3 +   258924 -aaG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548 0 -   193288 I
e caeRem4.Crem_Contig24   326211 48 -  1162296 I

a score=53802.000000
s ce10.chrX               490553 267 + 17718866 TTGCAGCGCACGATTTCAAATAAAACCAAACGTTCATTATCTCGGTGAGACCCATTGGCAACTATTCAATGAATGCAGCCAAGGCATGTTACAGTCATTTCTAGGCTCCCTGAACACAAGGGGATATCCGGACAAACATTGTCTAAGTGAGT-TTTC----------------------------------------------------------------ATTGTTCC------GTTCAGTATAGCTATGAGTCATCTGTTTGAAAAG--------------------------------TTTG----------------------------ATGTCATCGAAGTAA-----GAACA---------------------------TTGATGCAATATTATATG-----TTTGTAGCCGATTGGAATGTGGTTGGA
s cb4.chrX              21026248 426 - 21540570 TTGCAGTGCTCGATTCAATATGAAGGCCAATGTGCACCATATAGGCGAAACCCACTGGCAACTGTTCAACGAGTGTAGTAAAGGAATGCTCCAATCGTTTTTGGGATCATTGAACACTCGAGGATATCCTGATAGACATTGTCTTAGTAAGTGTAACGCAAAGTTTTGTGCCATCCAATCAGATCACTcctaaaaatgaaatcatcaaaaaaactGTTGGAACTTCTTTGACAATTATCTGTGCACttcaaaatcatctg-----aaatcaCCACTCTTGAAATATTCtagattttcgagatttgaCAGGCTTCCGTGCTCTCAGCCcggattttatttcaaaaacgatttcaaaacaatatttcatttttcgaataattttcCTTGAAAACTATATCAATGA----TTTTACAGCTGATTGGAACGTTCTTGGG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   326259 292 -  1162296 ttccagtgCCCGTTTCACAATGCATGCTAATATCCACCGTCTTGGCGAAACCCACTGGCAACTTTTCAACGAATGCAGTCAAGGAATGCTTCAATCGTTTCTAGGCTCTTTGAACACACGAGGATATCCGGATAGGCATTGTCTAAGTGAGT-TAAC-CCAGGTCTTTTG-----------------TCCCCAgaatg-----------------------actcattt--------tttgtg---ttcaatgTTACCAG-----ACAT-------------ACATTC-------------TTTG----------------------------TCATGGCGGAAACAAGT---AAGCA---------------------------TGAGAACT-CATCAGAAAAACGTTTTGCAGCCGATTGGAATGTTATTGGT
i caeRem4.Crem_Contig24 I 48 C 0
s caeSp111.Scaffold630   5520533 242 + 20921866 tttcagTGCCCGCTTTGCTATGAACGCTAACATTCACCATATTGGGGAGACTCATTGGCAACTATTCAACGAATGCAGTCAAGGAATGCTACAATCGTTTCTGGGCTCACTGAACACAAGAGGATATCCAGATCGACATTGTCTCAGTAAGT---------------------------------------------------------------------ATTTCTCT------TGTTAGTC---TCTTGAGTCACTG------------------------------------------TTTG---------------------------TATGTAACGAACACCAT------------------------------------GGGAAACT-TCTTA---------TTTGCAGCCGACTGGAATGTGATTGGA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       77470 228 +   258924 CTTTAGCGCTCGATTTATGACTACTGGAAACACACACCATCTCGGTGAAACTCACTGGCAATTATTCAATGAATGCAGCCAAGGCATGTTGCAATCGTTTGTCGGGTCATTGAACACACTAGGATATCCGGACAGGCATTGTTTGAGTGAGTgactc----------------------------------------------------------------atttttct--------tttctt----------------------------------------------------------tttg----------------------------gcGTTGGGAAAGAGATT--------------------------------------------CTTTATGAA-----TTTTCAGCCGATTGGAACGTTGTTGGC
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254       81548   0 -   193288 I

a score=78496.000000
s ce10.chrX               490820 87 + 17718866 GAATGGGATGGAAAGTTTCGGTTACAACATGCACAGTCGAGAAAGTTTTTGTGCTTTAACAAAAGAGCAAGGATAACTTTGAGGGTA
s cb4.chrX              21026674 87 - 21540570 GAATGGGACGGAAAGTTTCGAATACAGCATGCtcaatcgaaaaaattcttatGCTTCAATAAGCGAGCACGAGTCACATTGAGGGTA
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig24   326551 86 -  1162296 GAATGGGATGGGAAGTTTCGATTACAACATGCACAGTCGAAAAAGTTTATATGTTTCAATAAGCGAGCAAGGATCACGTTGAGAGT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5520775 87 + 20921866 GAATGGGATGGAAAGTTTCGATTACAACATGCACAATCGAAAAAGTTCTTGTGTTTTAATAAAAGAGCGAGAGTCACGTTAAGGGTA
i caeSp111.Scaffold630  C 0 I 19
s caePb3.Scfld02_254      121598 87 +   193288 GAATGGGATGGAAAATTTCGCTTACAGCACgcaaactccaaaaaatacaTATGCTTCAATAAACGTGCTAGAATAACTTTAAGAGTA
i caePb3.Scfld02_254    I 10201 I 39
s caeJap4.Scaffold54       77698 87 +   258924 GAATGGGGCGGAAAATTTCGATTACAGCATTCACAGTCCAAGAAATTTCTTTGTTTCAACAAAAGAGCACGAATAACTTTAAGGGTG
i caeJap4.Scaffold54    C 0 C 0

a score=-350.000000
s ce10.chrX               490907 11 + 17718866 TCAACTTTTTT--
s caeRem4.Crem_Contig24   326637  9 -  1162296 --aagattttt--
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       77785 11 +   258924 --AGCACTTTATT
i caeJap4.Scaffold54    C 0 I 93
e caePb3.Scfld02_254      121685 39 +   193288 I
e cb4.chrX              21026761 59 - 21540570 I
e caeSp111.Scaffold630   5520862 19 + 20921866 I

a score=242.000000
s ce10.chrX               490918 4 + 17718866 TAAA
s caeRem4.Crem_Contig24   326646 4 -  1162296 caaa
i caeRem4.Crem_Contig24 C 0 I 69
e caePb3.Scfld02_254      121685 39 +   193288 I
e caeJap4.Scaffold54       77796 93 +   258924 I
e cb4.chrX              21026761 59 - 21540570 I
e caeSp111.Scaffold630   5520862 19 + 20921866 I

a score=0.000000
s ce10.chrX               490922 454 + 17718866 CCTATTTTTTCAAAATtagggctcccattcggcgtctcacgccgcgatcgaaatgtttatagcgatgcgcgaaacccaaagagagtccgacgtggagttaagtttgcacgaaatagtgctatagggtatgacactatttggtgcaaacttcgtttcgcgtccgggactttttgggttccgcgcatcgctataaagatttcgatcgcATTTTTGAGAACTAAATGGATGTATACGAAACACATGCGTACCCTGAATATTTATAATCCGTTTATTAAATGATGAAATGTGTGCACAAGAAAGTTGggtacatatgggggtttttccccaaaatgctttttaatagttttttcactgattttttaaaattttacgcgaatgtttattttaatactattgttcattGAAAAGTATGCTTTATCAGGTAAATTTTTTTTAAACTCAATTAAAAACTAAC
e caePb3.Scfld02_254      121685  39 +   193288 I
e caeJap4.Scaffold54       77796  93 +   258924 I
e cb4.chrX              21026761  59 - 21540570 I
e caeSp111.Scaffold630   5520862  19 + 20921866 I
e caeRem4.Crem_Contig24   326650  69 -  1162296 I

a score=278.000000
s ce10.chrX               491376 21 + 17718866 ATTAAATTTACAA-----CATTTCTG
s caeRem4.Crem_Contig24   326719 25 -  1162296 ACTAAATATGCAAAAgtacattttt-
i caeRem4.Crem_Contig24 I 69 C 0
e caePb3.Scfld02_254      121685 39 +   193288 I
e caeJap4.Scaffold54       77796 93 +   258924 I
e cb4.chrX              21026761 59 - 21540570 I
e caeSp111.Scaffold630   5520862 19 + 20921866 I

a score=550.000000
s ce10.chrX               491397 7 + 17718866 AAAAAAC
s caeRem4.Crem_Contig24   326744 7 -  1162296 cataaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5520881 5 + 20921866 --aaaat
i caeSp111.Scaffold630  I 19 C 0
e caePb3.Scfld02_254      121685 39 +   193288 I
e caeJap4.Scaffold54       77796 93 +   258924 I
e cb4.chrX              21026761 59 - 21540570 I

a score=546.000000
s ce10.chrX               491404 1 + 17718866 A
s caeRem4.Crem_Contig24   326751 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5520886 1 + 20921866 a
i caeSp111.Scaffold630  C 0 I 2
s caeJap4.Scaffold54       77889 1 +   258924 A
i caeJap4.Scaffold54    I 93 C 0
e caePb3.Scfld02_254      121685 39 +   193288 I
e cb4.chrX              21026761 59 - 21540570 I

a score=-2540.000000
s ce10.chrX               491405 10 + 17718866 ATCCGAACAT
s cb4.chrX              21026820 10 - 21540570 ATACGAGTAT
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig24   326752 10 -  1162296 atttttcttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5520889  7 + 20921866 aaacaaa---
i caeSp111.Scaffold630  I 2 C 0
s caeJap4.Scaffold54       77890 10 +   258924 ATATCAACTA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      121685 39 +   193288 I

a score=74573.000000
s ce10.chrX               491415 104 + 17718866 TTCAGTTTAATGGAAGCGACGCCAAATGCACATTTATTGAAGAAGTTCGGGATAATGGGTTTTCTCGATTACGGTCTTCATGGAAACCCGAACTTTATTTAGGT
s cb4.chrX              21026830 104 - 21540570 TTCAGTTCAACGGTACAGATGTCAAGTGTACGTTCATTGAAGAGATACATGAAAATGGTTACTCCAGGTTACGGTCGTCCTGGAAGCCAGAGTTATACCTGGGT
i cb4.chrX              C 0 I 121
s caeRem4.Crem_Contig24   326762 104 -  1162296 ttcagttcaatgGTACTGACGCGAAATGCACATTCATTGAAGAAATCCATGACAATGGTTTTTCAAGGTTACGATCTGTTTGGAAACCGGAGTTGTTTTTaggt
i caeRem4.Crem_Contig24 C 0 I 34
s caeSp111.Scaffold630   5520896 104 + 20921866 tTTAGTTTATTGGTACCGATGCAAAATGCACGTTTATCGAGGAGATTCGAGATAATGGATTTTCCAGAATGCGATCTGCGTGGAAACCGGAATTGTATCTAGGT
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_254      121724 104 +   193288 TTAAGATCAACGGTATGGATATGAAGTGTAAATTCGTCGAAGAAATTCACGAAAATGGATATTCGAGAATACGATCTTCGTGGAGAACAGAATTGTTTTTGGGT
i caePb3.Scfld02_254    I 39 I 206
s caeJap4.Scaffold54       77900 104 +   258924 TTTAGATTAACGGATTGGACACAAAATGCGCATTTATCGAGGAAATACAAGAAAATGGATTTTCAAGGCTGCGGTCGGCATGGAAGAATGAGCTTTACCTAGGT
i caeJap4.Scaffold54    C 0 C 0

a score=0.000000
s ce10.chrX               491519 4 + 17718866 ATGT
e caePb3.Scfld02_254      121828 206 +   193288 I
e caeJap4.Scaffold54       78004 0 +   258924 C
e cb4.chrX              21026934 121 - 21540570 I
e caeSp111.Scaffold630   5521000 24 + 20921866 I
e caeRem4.Crem_Contig24   326866 34 -  1162296 I

a score=777.000000
s ce10.chrX               491523 54 + 17718866 GATGGAACTGCAAAAAAAATTGAATGAATACATTTGAAAATGGAAAATATTATT
s caeJap4.Scaffold54       78004 38 +   258924 -----------AACGGAAATTTAATTGAAACAT-----AAttgaaactattttt
i caeJap4.Scaffold54    C 0 I 9
e caePb3.Scfld02_254      121828 206 +   193288 I
e cb4.chrX              21026934 121 - 21540570 I
e caeSp111.Scaffold630   5521000 24 + 20921866 I
e caeRem4.Crem_Contig24   326866 34 -  1162296 I

a score=0.000000
s ce10.chrX               491577 312 + 17718866 GGAAAAGTTAGTCATAAATAGTTAGTTGCaataattaattttatttgatttttttttCaaatctggtcgtccatctacctcaaagtacctacattgagctgaaaacgaaaaatgatgtactgctatacacaaaattaaacggttttaaatttaatcctttaaaaaagatactttgacaagtcggtcaaatttcaaattttaactaatttaggtcattttttgagccgaactttttgaactttttttgataagttctcgagaagtttcattattaaaGCAATAAACAGAACTAAACTACACCAACTTTATTCC
e caePb3.Scfld02_254      121828 206 +   193288 I
e caeJap4.Scaffold54       78042   9 +   258924 I
e cb4.chrX              21026934 121 - 21540570 I
e caeSp111.Scaffold630   5521000  24 + 20921866 I
e caeRem4.Crem_Contig24   326866  34 -  1162296 I

a score=728.000000
s ce10.chrX               491889 8 + 17718866 AAATTAAA
s caeSp111.Scaffold630   5521024 8 + 20921866 AAATTAAA
i caeSp111.Scaffold630  I 24 C 0
e caePb3.Scfld02_254      121828 206 +   193288 I
e caeJap4.Scaffold54       78042 9 +   258924 I
e cb4.chrX              21026934 121 - 21540570 I
e caeRem4.Crem_Contig24   326866 34 -  1162296 I

a score=-1780.000000
s ce10.chrX               491897 1 + 17718866 --T
s caeRem4.Crem_Contig24   326900 1 -  1162296 -T-
i caeRem4.Crem_Contig24 I 34 C 0
s caeSp111.Scaffold630   5521032 1 + 20921866 G--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      121828 206 +   193288 I
e caeJap4.Scaffold54       78042 9 +   258924 I
e cb4.chrX              21026934 121 - 21540570 I

a score=29.000000
s ce10.chrX               491898 1 + 17718866 T
s cb4.chrX              21027055 1 - 21540570 t
i cb4.chrX              I 121 C 0
s caeRem4.Crem_Contig24   326901 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      121828 206 +   193288 I
e caeJap4.Scaffold54       78042 9 +   258924 I
e caeSp111.Scaffold630   5521033 0 + 20921866 C

a score=2246.000000
s ce10.chrX               491899 3 + 17718866 TTT
s cb4.chrX              21027056 3 - 21540570 ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   326902 3 -  1162296 TTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5521033 2 + 20921866 -TT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       78051 3 +   258924 tTT
i caeJap4.Scaffold54    I 9 C 0
e caePb3.Scfld02_254      121828 206 +   193288 I

a score=82969.000000
s ce10.chrX               491902 144 + 17718866 ACAGGCTTCAACGGTCGTGGTAGATTTCAAAATCCTTTATCCTATCATTTAAAGCCAAGATGTTTTGACTGGATCAAGCTTGTCCGTTATGTTGCAGAATCCGAGAAAAGCGTCTGCTCAACTCCCCCAAAACCAAAATTATCA
s cb4.chrX              21027059 141 - 21540570 tcaggtTTTAACAGTCGTGGAAGGTTTCAAAATCCATTGTCTTTTCACCTTAAACCTCGATGTTTTGATTGGATCAAACTGGTACGGTATGTACCTGAATCTGAGAAAAATGTGTGTTCTGCTCCGCCAAAACCAAA---GCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   326905 138 -  1162296 TTAGGTTTCAACGGTCGTGGTCGATTTCAAAACCCTCTCTCTTATCACTTGAAGCCTCGATGTTTCGACTGGATCAAACTTGTTCGCTATGttccagaatctgaaaagaatgTGTGCTCCATTCCTCCAAAACCAA------CA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5521035 141 + 20921866 GCAGGATTCAACGGTCGTGGCCGATTCCAAAACCCTCTATCCTACCACCTTAAACCTCGTTGCTTCGACTGGATAAAACTCGTTCGTTATGTTcctgaatcagaaaaacatgtGTGTCCTGCACTTCCCAAGCCAAA---ACCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      122034 141 +   193288 ATAGGTTTCAATGAACGCGGCAAGTTTCAACGTCCCTCTTCAAGTAATCTCAAACCGCGATGCTTTGATTGGATCAAGTTCGTTCGCTATGTTCCAGTGGCGGAGAAAACAACGTGCAGTACATATAAGAAGTCGTC---TCCA
i caePb3.Scfld02_254    I 206 C 0
s caeJap4.Scaffold54       78054 144 +   258924 CAAGGTTTCAACGGCAGAGGAAGGTTCCAAAATCCCCTATCTTATCACATGAAACCAAGATGTTTTGATTGGATCAAGTTGGTTCGATATGTGACtaatctagaaaaaaattattgtgaaGCATCCACAACGCCAAGATCgtca
i caeJap4.Scaffold54    C 0 I 1350

a score=32811.000000
s ce10.chrX               492046 83 + 17718866 CCCTCCCCACTTGAGCACTCGTCATTTGTCCATCATGCAGTTCGTTCAAATTTTTTGAAAAAAGTATCTGCCACACATGATAG
s cb4.chrX              21027200 83 - 21540570 TCCACGCCAATTGAGCATTCCCCATTTGCCTATAAAGTTGCTCgttctcactttttgaaaaaagtttcagccaCACATGAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   327043 83 -  1162296 ACTCCGCCCATCGATTATTCTTCTTTCATTCACAAAGCAGCCCGTTcaaacttcttgaaaaaagtgtctgCCACACATGATAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5521176 83 + 20921866 ACCACAGCCATTGAGCATTCCTCGTTTGTTCACAATGTTGCCCGTTccagttttctcaaaaaagtatcCGCCACACATGATAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      122175 80 +   193288 CTACTAACTTTCG---ATTCTCCTGCCGTGTACAATGTAGttcgttcaaattttttgagaaaagtttcagCATCCTAAGACAG
i caePb3.Scfld02_254    C 0 I 5803
e caeJap4.Scaffold54       78198 1350 +   258924 I

a score=4357.000000
s ce10.chrX               492129 10 + 17718866 TTTGTATCGT
s cb4.chrX              21027283 10 - 21540570 TTTATATCGT
i cb4.chrX              C 0 I 213
s caeRem4.Crem_Contig24   327126 10 -  1162296 TTTATACCGC
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold630   5521259 10 + 20921866 TTTGTATCGT
i caeSp111.Scaffold630  C 0 I 5
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I

a score=347.000000
s ce10.chrX               492139 76 + 17718866 --ACAATGAAATCCAGAAAAT-------CATAAGATAATTGCATGAATATATCATTGTTC--CAGATAATTCCGAATGTTTGTATAT
s caeRem4.Crem_Contig24   327139 79 -  1162296 TCATCAAAGA-CCCATCATAT-------AACGTGATTTCTATCTATTCATACTGTTATACAGGAGAGAATCAGAAATGTTTgtatat
i caeRem4.Crem_Contig24 I 3 I 23
s caeSp111.Scaffold630   5521274 85 + 20921866 --atcaaaaagtttatgATATCTGTTTCAATGAGATGTGTTTGTATAAATCCCATGTTTTTGCCAGAAATACGCACTgcttttatat
i caeSp111.Scaffold630  I 5 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I

a score=-230.000000
s ce10.chrX               492215 31 + 17718866 GTACCATTATAGAATATGTAAACCGTCAAAA
s caeSp111.Scaffold630   5521359 26 + 20921866 tt-ttatttt----tattgaaattctcaaga
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I
e caeRem4.Crem_Contig24   327218 23 -  1162296 I

a score=-2438.000000
s ce10.chrX               492246 66 + 17718866 TTATCGAATAATAAAATGTT-TAAGTTTGAAAATTTTTTCGGCATTTGTGTG---T-TTTAATGAAGTTTA
s caeRem4.Crem_Contig24   327241 63 -  1162296 TTGCCAAATAAAACTTGGTTATAAT-----ATTATTGGTCGGTATTTAAATG---TGTTTCATGATGTCTA
i caeRem4.Crem_Contig24 I 23 I 98
s caeSp111.Scaffold630   5521385 61 + 20921866 atggaaaatatttctttatt-tgat-----aaaaaatttcaaattttcaatgtCCTAATCCAGGAAA----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I

a score=780.000000
s ce10.chrX               492312 30 + 17718866 CGTTTTTCTGTCTCTAAACCAATCAAAAAA
s caeSp111.Scaffold630   5521446 25 + 20921866 CGTTTTT-----TCTAAATCTGGCACAAGA
i caeSp111.Scaffold630  C 0 I 41
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I
e caeRem4.Crem_Contig24   327304 98 -  1162296 I

a score=0.000000
s ce10.chrX               492342 77 + 17718866 TCAGTTAGCAATAATTATTTTCAGAATTAATTTCAGATTAATATCAGATTCATCCACGTAGACTTGCCATAAGTGTT
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I
e caeSp111.Scaffold630   5521471 41 + 20921866 I
e caeRem4.Crem_Contig24   327304 98 -  1162296 I

a score=-3967.000000
s ce10.chrX               492419 529 + 17718866  
s caeRem4.Crem_Contig24   327402 337 -  1162296  
i caeRem4.Crem_Contig24 I 98 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e cb4.chrX              21027293 213 - 21540570 I
e caeSp111.Scaffold630   5521471  41 + 20921866 I

a score=1042.000000
s ce10.chrX               492948 12 + 17718866 ACAAGA---TTCACA
s cb4.chrX              21027506 15 - 21540570 ATAAAATAGGTAACA
i cb4.chrX              I 213 C 0
s caeRem4.Crem_Contig24   327739 12 -  1162296 ACAAGA---GTAACA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I
e caeSp111.Scaffold630   5521471 41 + 20921866 I

a score=9741.000000
s ce10.chrX               492960 180 + 17718866 AAAAAACCACC---TCATATTT-TCAGTTTAACATCAGTCAATCAAAACGCGTGTTAACC--------CTGT-GCCATCTGTC-----TGATCCGACTCAGAAAACATGCAAAGTGAGTAAAAGAGATCAACCT----GCCGA-GAGAAGTGTGGCAAACAACAGTCG----------A-----ATCTTCTCTTCGTCTTTTCTCTCCAGCTCGATGC
s cb4.chrX              21027521 174 - 21540570 --ATAACAATC----AATATAT-TTAGTTTACCATCAGTCAATCAAAACTTGTGTTAACC----CTCTTTGTTTCCTCCCGACAAATGTGATCT-CTCCagaaaacatgagaaa-------atgaagccta-------gaaaacgaaaaaagagaaagagaggagaaa----atgccga-----gaagaTTCTCTATCTATTT---------CTATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   327751 194 -  1162296 --AAAACAACCTAATAATATTTCCTCATTCACCATCAGTCAATCAAATAGTGTGTTAACCCGGGCGTGCTGTTGCCACCCGAC-----TGATCC-CTCCAGAAAACATGCGAAG-------ATGAAATCAACCTGCCGGGGAacaaaacgagagaaaaacgagagagacgTGATGCGGAATGGCAGAGATAGAAGATCTTCTC---------TTATTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5521512 155 + 20921866 aaaaaacaagc------------CCATTCCCACATCAGTCAATCAAAAAGCGTGTTAACC-------------TCCCTTTGAA------GCCCC-TCCCAAAAAACATGCGAAA----------GAATCAACCT----GCCAACGGGGAAGAGGGAAGACATGAGGCA---AACAAAAA-----ggatctttttcttcttctc---------caattc
i caeSp111.Scaffold630  I 41 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       78198 1350 +   258924 I

a score=84980.000000
s ce10.chrX               493140 353 + 17718866 CAAATGGCATCTTGACGCC---------GAGGCAAGAATAGTGTAAAAATT--------GAGAAAGTGCTCGAGTTGATGAGAC---------GACTGCAAAACGAGA---------------GGGAGAGCC----CCGTG------------AGCACAACC---------GCTCAACAAA-ATTCGATGTGTTGTTGT------TAGTTTCTGTTTTCTTTATTTGCTTTAAATTTC---CGAACT-TTTTTGTATAT----CTTTGCTTTTTTCTGAATACAAGAGAA----------GAGC--ATAATGGGCG---CTGATCTTCCACCGAAATTTCAATATGCATTCCGAAGGTGTCTTTTCTACACTTTTGTACTTGTCGCCTGGTTATTCATTGGAATGATATTGTTTCCCGCATTGTGTACCCCAGCAGTCAAACAGGTTAG
s cb4.chrX              21027695 402 - 21540570 GGAATGGCATCTTGATGCCGGGCAAAACGACGTAAG-ACAgtgtaaaaatt--------gagaaagtgcTCAAGTTGATGAGACGCA--AGtagaatagaaaaagaga---gcaAAAGACACACGGAAATCT---GCGGGAGTTTGAGGCAAGATCACTACTCCCGAGGCAAAACGACAAA-ATTCGAAGTGCTGTTGTCTCTGCGAGCATTGAATCTCTTCCCTTatctccaactttttttcaattgtttctatttac-----------tttttttacaCATAACACAC------------------AATGCGAGCATCTGAACTTTCTCCAAAGTTCCAATATGCATTTCGCAGGTGTTTATTCTACACTTTTGTACTTGTAGCTTGGTTATTCATGGGAATGATTTTATTTCCAGCGTTGTGTACACCAACAGTTAAAcaggtgag
i cb4.chrX              C 0 I 1282
s caeRem4.Crem_Contig24   327945 422 -  1162296 CGAATGGCATCTTGACGCCGAGGAAAA-GACACAAA-ATAGtgtaaaaatt-------ggagaaagtGCTCAAGTTGATGAGACGCGGCggttgagaagaaaataagaagcaCAGAAGACTGGAGGAGAGCTCAAGCGGGAGC----------AGCACAACTCCCGGGG--GCTCAGCAAA-ATTCGATGTGTTGTCATCTCTGctagtttcta--tttttcttttatcttcaactctactcgaact-tttttgtttacaacttgttgttttttcttaaacaaaaaacatagTATAACAAGACC--AAAATGCGAGCATCTGAACTTTCCCCAAAGTTTCAATATGCATTCCGGAGGTGTTTATTTTACACTTTTGTTCTGGTGGCCTGGTTATTCATTGGAATGCTCCTGTTTCCGGCTCTCTGCACGCCCGCTGTCAAACAGGTTGG
i caeRem4.Crem_Contig24 C 0 I 176
s caeSp111.Scaffold630   5521667 359 + 20921866 CGAATGGCATCTTGAC------------GACTCAAGAATAGTGTAAAAATT------TGGAGAAAGTGCTCTAGATGATGA------------GAGTGGAAAGAGCGA----------------AGAAAGCTCACGCCAGG------------AGCACAATTCTCTT----CAACCCCGAA-ATTCGATG---TGTCGTCTCTTCTAGTTT-----CTTTTCC-------CAACCTCCCCttcgaac-tttttgtttac-----------ttttattaaacaaaaaaaaattgaaaaagtagcTAGAAAATGGGAACCTCTGAACTCTCACCAAAGTTTCAATATGCGTTCCGAAGATGTTTATTTTATACTTTTGTCCTTGTCGCTTGGCTTTTTATTGGAATGATTCTATTCCCAGCTTTGTGTACTCCGGCAGTTAAACAGGTGAG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       79548 355 +   258924 CGACTGATATCTTGTTGCTGA-------GAAGTGAG--CAGTGTAAAAAAGAACCTCAAGAGAAAGTGCTCTAGCTGATGA------------GACGGCAATAAACGC---------------TCGGACGCTCTAACGGGAG-----------CGCATTCCTCCCCG----CTTCTCTGACTACTCGATGTGTTGTTGTCTGCTTGACAATTAG--ATTTTGGTGTTTAtcaaagttt-------at-ttattttgcac-----------TTACTTCAAAC-------------------TTTC--AACATGCGTCCCACCGATCTTTCCCCAAAGTTTCAACTGGCGTTCCGGAGGTGCCTATTTTATACCTTTGCTCTGGTCGCATGGCTTTTCATTGGTATGCTCTTGTTCCCATCGCTATGTAGTAAAAATAGTAGACAGGTAG-
i caeJap4.Scaffold54    I 1350 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=-31.000000
s ce10.chrX               493493 1 + 17718866 C
s caeJap4.Scaffold54       79903 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21028097 1282 - 21540570 I
e caeSp111.Scaffold630   5522026 0 + 20921866 C
e caeRem4.Crem_Contig24   328367 176 -  1162296 I

a score=211.000000
s ce10.chrX               493494 12 + 17718866 AGACCGTATTTC
s caeSp111.Scaffold630   5522026  6 + 20921866 ------tgtttt
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       79904 10 +   258924 --AGAATATTTT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21028097 1282 - 21540570 I
e caeRem4.Crem_Contig24   328367 176 -  1162296 I

a score=-2190.000000
s ce10.chrX               493506 206 + 17718866 GGATTTTTAAATTTGGTACATTTCGAAGCTCCATTGTAAAACAATGGTGAAGAGACCAAAATCAACTGAAATCAGTGCTAAAATTTTGAACCAAAATATCTCGGAGCTCCCCGATGATTAGCAGCTGGATTTTTCCGGATGATATAGCCAGAACCTTCTATTATCGGATGGCAATATTGTCATCTTGATGTCCGGTGTCTGGTGTA
s caeSp111.Scaffold630   5522032  85 + 20921866 --atttctcaa--------------aaatttctttagAAATCGATGGC---------------------------TGTTA----TTCAAGCCAAAAAAGTT-------------------------------------GTGATGtagtaaaaatattttatt----------------------ttgata---------------a
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       79914   0 +   258924 C
e cb4.chrX              21028097 1282 - 21540570 I
e caeRem4.Crem_Contig24   328367 176 -  1162296 I

a score=-1562.000000
s ce10.chrX               493712 55 + 17718866 ---AAAACTTCCCTTGTGAGGAAATTCAAAAATTTTGCCACCTCTGTTTTTCACTTCC
s caeRem4.Crem_Contig24   328543 35 -  1162296 ---AAATTTTAGCTCACTATAAACTTCAGAAATATCGA--------------------
i caeRem4.Crem_Contig24 I 176 C 0
s caeSp111.Scaffold630   5522117 51 + 20921866 aaaatatgcAAATTCATGAtgaga-tcaaaaatatttga------gcTTTTCAGCTGc
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       79914  0 +   258924 C
e cb4.chrX              21028097 1282 - 21540570 I

a score=-1073.000000
s ce10.chrX               493767 106 + 17718866 GCAGCTCAAATGTCAGTTCTTGTTACTGGCTGAGTAGCGTCAGTGAAAATTTGGCATCCCCTTTTTTGTGTTTTAAAAGTCCAAACCTATTCAGAATTAGGAAAAA
s caeRem4.Crem_Contig24   328578  63 -  1162296 -----------Accagttatttt---------------------gaaaacttggcatgaaa------atgaatgaataaataaaacgT-----GAATAATGCAAGC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       79914   0 +   258924 C
e cb4.chrX              21028097 1282 - 21540570 I
e caeSp111.Scaffold630   5522168   0 + 20921866 C

a score=-2412.000000
s ce10.chrX               493873 84 + 17718866 -TTGACTTTCTGAAAACAAAAAAAAGATATTTTGAGACTGTTGGTTTTGAACTTAACACA---CTTAAAAATCAAATAATGTCTGAAC
s caeRem4.Crem_Contig24   328641 64 -  1162296 TATACTGCtgggaaaaaaaa------------------------ttttaaatccaAAACGGAGCGTTGACAAATATTATAATTTAGAC
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold630   5522168 57 + 20921866 -ttgattttctaaaattaaa------------------------tgTTTCATATaaca-----ttttggtttttagtaagttttgga-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       79914  0 +   258924 C
e cb4.chrX              21028097 1282 - 21540570 I

a score=-1273.000000
s ce10.chrX               493957 12 + 17718866 ACATGAGATGCG
s cb4.chrX              21029379 12 - 21540570 ACATTCAAAGCA
i cb4.chrX              I 1282 C 0
s caeRem4.Crem_Contig24   328707  9 -  1162296 ACaatcaaa---
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold630   5522225  9 + 20921866 --tttcaaaac-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       79914  0 +   258924 C

a score=78697.000000
s ce10.chrX               493969 196 + 17718866 GAACAGTGCATGCCTTGCAAAGAT-CCACTTTA---------ATAAAATTCAGGACGATAATGAAGCAGGAATATTCCGGTTAGATGCAAAACGTTCAGATTTATTAAATGTGCTCTGGGCAGAAACAATAACCAACGGCGAGGATGATTGGTCAGAGCTTGCAGATCAAAAACTGGAATTGTATGAAAAAGTAAGTATTTTT-CAA
s cb4.chrX              21029391 205 - 21540570 AAGCAATGTTCGCCCTCTTAAATCCAAGATTTTAATTGAATATTTG-TTTCAGGACGATAACGAAGCTGGAGTATTCCGATTGGATGCAAAACGATCAGATTTGTTGAATGTTTTATGGGCTGAGACAATCACAAATGGAGAGGATGACTGGTCAGCGCTGGCAGATCAAAAGCTGGAGCTCTACGAAAAGGTAcacattttt-cca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   328716 173 -  1162296 -------------------------agaatttt---------tttgttttcaggatgATAATGAGGCAGGAATGTTCCGATTAGATGCCAAACGATCAGATTTGTTGAATGTTCTATGGGCTGAGACGATAACAAATGGAGAAGATGATTGGTCAGAGTTGGCAGATCAAAAGTTGGAGCTATATGAGAAGGTAATCAGTTTGACTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5522234 172 + 20921866 -------------------------caactttt---------tttgtttttaggaCGATAATGAAGCTGGAATTTTCCGATTAGACGCTAAAAGATCAGATCTTCTGAATGTGTTATGGGCAGAAACAATAACCAACGGAGAAGATGATTGGTCAGAGCTCGCAGATCAGAAATTGGAACTATATGAGAAGGTGAGAACGTTT-CGA
i caeSp111.Scaffold630  C 0 I 68
s caeJap4.Scaffold54       79914 180 +   258924 GAACACTGT----------------AACCTTTT---AAAGTCTACAAATTAAGGATGAAAGTCAAGCGATGCTGTTACGATTAGACGCAAAACGATCCGACTTGTTGAATGTACTCTGGGCCGAGACAATCACAAATGGCGAAGATGATTGGTCCGAACTTGCCGATCAAAAGTTGGAGCTTTATGAAAAGGTGCATAA--------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=1142.000000
s ce10.chrX               494165 7 + 17718866 TACATTT
s cb4.chrX              21029596 7 - 21540570 gacaatG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   328889 7 -  1162296 AATATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       80094 7 +   258924 CACATTT
i caeJap4.Scaffold54    C 0 I 2
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=546.000000
s ce10.chrX               494172 2 + 17718866 AA
s cb4.chrX              21029603 2 - 21540570 AA
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig24   328896 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80101 2 +   258924 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=15.000000
s ce10.chrX               494174 5 + 17718866 GCTAC
s caeRem4.Crem_Contig24   328898 5 -  1162296 ATGAC
i caeRem4.Crem_Contig24 C 0 I 153
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80101 2 +   258924 I
e cb4.chrX              21029605 15 - 21540570 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=0.000000
s ce10.chrX               494179 806 + 17718866  
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80101   2 +   258924 I
e cb4.chrX              21029605  15 - 21540570 I
e caeSp111.Scaffold630   5522406  68 + 20921866 I
e caeRem4.Crem_Contig24   328903 153 -  1162296 I

a score=825.000000
s ce10.chrX               494985 22 + 17718866 TTTTCGTATCTTGACATTGATA
s caeRem4.Crem_Contig24   329056 22 -  1162296 tttctgtATCTAGTAGTTGTTA
i caeRem4.Crem_Contig24 I 153 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80101  2 +   258924 I
e cb4.chrX              21029605 15 - 21540570 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=-1102.000000
s ce10.chrX               495007 18 + 17718866 A--------AAGTTACTTTATCCAAA
s caeRem4.Crem_Contig24   329078 26 -  1162296 ATCCCTAAGAAACTTATCTATCACAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       80103 18 +   258924 --------AAAGTAAATATTTGTTGA
i caeJap4.Scaffold54    I 2 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21029605 15 - 21540570 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=455.000000
s ce10.chrX               495025 4 + 17718866 TTTT
s cb4.chrX              21029620 4 - 21540570 TTCC
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig24   329104 4 -  1162296 TTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       80121 4 +   258924 TTTA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeSp111.Scaffold630   5522406 68 + 20921866 I

a score=163419.000000
s ce10.chrX               495029 447 + 17718866  
s cb4.chrX              21029624 514 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   329108 461 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5522474 510 + 20921866  
i caeSp111.Scaffold630  I 68 I 24
s caeJap4.Scaffold54       80125 421 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=-4652.000000
s ce10.chrX               495476 22 + 17718866 A------TGCGTTTTCAG---------AGTGATGTTT
s cb4.chrX              21030138 24 - 21540570 AAGAGTTAGCGATTt-------------gtaaattta
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   329569 26 -  1162296 GTGAA--AGAGATTTGGA---------AGTGAACTCA
i caeRem4.Crem_Contig24 C 0 I 2
s caeJap4.Scaffold54       80546 29 +   258924 --------GTCTTTTTTGACTGTTAACaataatattt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeSp111.Scaffold630   5522984 24 + 20921866 I

a score=49242.000000
s ce10.chrX               495498  99 + 17718866 CTTCTAATCTGAGTTTT-CAGCCATTTATTGAAGCAATTTTTTCGATTTTTCTGCAATTCACGACAGTTGGAGAGGTGGATAATGAGTTTCAGTAAGGAT
s cb4.chrX              21030164  95 - 21540570 ttt----tcggaaCATT-CAGCCATTCATTGAAGCGATTTTCTCAATCTTTCTGCAATTCACAACTGTGGGAGAAGTAGATAACGAGTTTCAGTAAGCAt
i cb4.chrX              I 2 I 18
s caeRem4.Crem_Contig24   329597 100 -  1162296 TACAGAATGGGAAAATTACAGCCATTCATCGAAGCAATCTTCTCGATTTTCTTGCAATTCACAACTGTTGGAGAGGTGGATAATGAATTCCAGTAAGGAT
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold630   5523008  96 + 20921866 tttagaaaaaagatttt-cagcCGTTCATTGAAGCaattttctctatcttcCTGCAATTTACAACCGTCGGAGAGGTGGATAATGAGTTtcagttag---
i caeSp111.Scaffold630  I 24 C 0
s caeJap4.Scaffold54       80575  97 +   258924 --caaaaactttttttt-cagcctTTCATTGAAGCcatattttcgattttcctcCAGTTTACCACTGTCGGAGAAGTAGATAATGAATTCCAGTGAGCtt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=-2209.000000
s ce10.chrX               495597 10 + 17718866 ---TTA-----AGGAGTT---
s caeRem4.Crem_Contig24   329697 10 -  1162296 ---TTT-----GGAAGTT---
i caeRem4.Crem_Contig24 C 0 I 270
s caeSp111.Scaffold630   5523104  3 + 20921866 ---ttt---------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       80672 21 +   258924 ttatttaaacaaaaagttGGT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21030259 18 - 21540570 I

a score=350.000000
s ce10.chrX               495607 10 + 17718866 CTTATAGATA
s caeSp111.Scaffold630   5523107  7 + 20921866 tttat---ta
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       80693 10 +   258924 TCCATAAATA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21030259 18 - 21540570 I
e caeRem4.Crem_Contig24   329707 270 -  1162296 I

a score=823.000000
s ce10.chrX               495617  94 + 17718866 TTGAAATTTCGCAAGATTGTGGGGTTTTATTTAACAAAAAACCCCAATAATTTGATT--------------ATGTA------CTTAAACTTACAAAAACATTAAAAATATGCAA
s caeSp111.Scaffold630   5523114 100 + 20921866 ttaacACCTTGAAA--------------ATTTgacgaaaaaggaaaaccatttgattcagagaaaaaaccagTGTAAGTCCGCTGAAATCTACATCtgtatcaaaaatttgaaa
i caeSp111.Scaffold630  C 0 I 93
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80703   0 +   258924 C
e cb4.chrX              21030259  18 - 21540570 I
e caeRem4.Crem_Contig24   329707 270 -  1162296 I

a score=0.000000
s ce10.chrX               495711 461 + 17718866 AAACACTCCCTAAAAAGTCAAAACTATTGAGATGGCTTATTAATTAAATGGGGTGCAGCACTAATTTTTGAATGGCTTGTTAGGGTGTAGCACTGATAGAGATGCCACACTAGTAAAAAGCATACAAAATACACATTTTATTTGCTAATTTCATAGCCAATTCTCGGAAAAACTTGAATAATTCAGTGAACATTTTGATCATATAAAAACTGTTGTTTATGTAGAAGAGATTTATTGAAAAATGTTCTGTTTTTTTGGATTGAAACGTAAAATTTTAATTTATCTCAAAGCTTGAAAAACATAGACAGTTTTACTGTAATGATTACGAAGTGGTTTGGGACCGACTTTGAACaaaaaaaaaagataattaataatttaaaGAGATATTGGGGTTAAACTAAACAAGTACCTCCAAATCATTCGTGTACTTTTCTGCTGTTCTAAAATTTAGATTTGGACCT
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80703   0 +   258924 C
e cb4.chrX              21030259  18 - 21540570 I
e caeSp111.Scaffold630   5523214  93 + 20921866 I
e caeRem4.Crem_Contig24   329707 270 -  1162296 I

a score=333.000000
s ce10.chrX               496172 5 + 17718866 AAACT
s caeRem4.Crem_Contig24   329977 5 -  1162296 AAATT
i caeRem4.Crem_Contig24 I 270 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80703 0 +   258924 C
e cb4.chrX              21030259 18 - 21540570 I
e caeSp111.Scaffold630   5523214 93 + 20921866 I

a score=-422.000000
s ce10.chrX               496177  7 + 17718866 ------TCCTATT
s cb4.chrX              21030277  7 - 21540570 ------tctcagt
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig24   329982 13 -  1162296 TCATATCAtaact
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80703  0 +   258924 C
e caeSp111.Scaffold630   5523214 93 + 20921866 I

a score=119.000000
s ce10.chrX               496184 3 + 17718866 TCT
s cb4.chrX              21030284 3 - 21540570 ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   329995 3 -  1162296 tta
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       80703 3 +   258924 TAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeSp111.Scaffold630   5523214 93 + 20921866 I

a score=75086.000000
s ce10.chrX               496187 128 + 17718866 AATTTTCAGCGGTGTGCTTCCCTACTGCATTGTAGTGCTTGGATTGGCTCTTATCACAGCGTTATATCAAGAAATGCAACACAACATTGAGCGATTTATTCATCCTTTCGAGTATTCATTTAACAGGT
s cb4.chrX              21030287 128 - 21540570 gtttttcagtggCGTGCTACCCTATGGAATAGTTGTTCTTGGCTTGGCTCTTATCACAGCTCTTTACCAAGAAATGCAACAAAACATAGAGCATTTTATTCATCCTTTCGAATATTCGTTCAACAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   329998 128 -  1162296 aaatttcagcgGTGTCCTCCCATATGGAATTGTTGTTCTTGGCTTAGCGCTCATTACTGCTCTTTATCAAGAAATGCAGCAAAATATCGAACGGTTCATTCATCCATTTGAATATTCATTCAATAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5523307 128 + 20921866 aattttcagTGGGATCCTGCCCTATTGCATTGTAGTTCTTGGTTTGGCTCTCATTACAGCACTCTACCAGGAGATGCAACAGAATATTGAACGATTCATTCACCCATTTGAATACTCTTTCAACAGGT
i caeSp111.Scaffold630  I 93 C 0
s caeJap4.Scaffold54       80706 128 +   258924 AAATTTCAGTGGCGTTCTTCCCTACTGCGTAGTTGTCCTTGGACTAGCTCTTATGACGGCTTTGTATCACGAAATGAAGCACAACATTGAGCACTTTATTCATCCATTTGAATACTCTTTTAACAggt
i caeJap4.Scaffold54    C 0 I 3224
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=180.000000
s ce10.chrX               496315 1 + 17718866 A
s cb4.chrX              21030415 1 - 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   330126 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5523435 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 21
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I

a score=273.000000
s ce10.chrX               496316 1 + 17718866 A
s cb4.chrX              21030416 1 - 21540570 A
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24   330127 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 26
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e caeSp111.Scaffold630   5523436 21 + 20921866 I

a score=0.000000
s ce10.chrX               496317 767 + 17718866  
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030417  30 - 21540570 I
e caeSp111.Scaffold630   5523436  21 + 20921866 I
e caeRem4.Crem_Contig24   330128  26 -  1162296 I

a score=282.000000
s ce10.chrX               497084 3 + 17718866 ACT
s caeSp111.Scaffold630   5523457 3 + 20921866 ACT
i caeSp111.Scaffold630  I 21 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030417 30 - 21540570 I
e caeRem4.Crem_Contig24   330128 26 -  1162296 I

a score=27.000000
s ce10.chrX               497087 9 + 17718866 AAATTT--TTG
s caeRem4.Crem_Contig24   330154 9 -  1162296 AAACTT--TTG
i caeRem4.Crem_Contig24 I 26 C 0
s caeSp111.Scaffold630   5523460 9 + 20921866 -AACttggtt-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030417 30 - 21540570 I

a score=42960.000000
s ce10.chrX               497096 346 + 17718866 TTTCAGATTATGCGGAAATGTTGAAAGATGGGCCGGTGAGAAGAGTGAAGATAAAAAGTCGATTGTAACATCAAGAATAGAAGAAGAAAATGAGGACGAAATTAGTGATTACGAAT-AAC--TACGACTATTTTCAATAATGAGCAG-AACCTCCCCTCCCTCCATTACGAAAAAATGTCATTTCA---TTCAAAG----TTCTTTCATTTTGAAACATTTCTATTATAAGGATGTCATTCATTTATTATCGTTTTCTTTCGAATCCCTCTGCAAAAAGCA------ATGATAGTCACAAACGGTGAGCATAGATTAGATCTTTAGAGTTTTTTTTCGCATTGCAACGTGTACATTATTTTAT
s cb4.chrX              21030447 271 - 21540570 tttcagattgtgtGGAACTGTTGAGAGATGGGTTGGAGAACGAGACGAGGCAAAAAAGTCGATTGCAGAGACAAGAATAGAGGAGGAGAATGAAGATGAGCTTAGTGACTATGAGT-aataatttcagtattttcaaagttgaaaaaaaaaat-----------------------cctcatTACA--TTTCCAAGTGCTTTCgtcca-----------------------------------ttgaaaaaaat-----------ggttcaaTTAGCTGTT------TTGATAGATTTGAACGGTGAACATAGATCTTTTTATTCG-----TTTTCAATCTTGCAACGTGTATA---------
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig24   330163 305 -  1162296 TTATAGATTGTGTGGAACAGTTGAGAGATGGATTGGCGAAAAAAGCGATGAGAAGAAATCAATTGCTTCGAcaagaatagaagaagaaaatgaggatgAGCTTAGTGATTATGAAT-AAT--TTcttgtatttcaaaaaattaaaaacaaaataacc------------aaaaCAAtgtcatttca--tttcaaagtGCTTTCTCTCCCCT------TCTTCTCTA---------------ATTTTACAACTTT-----------CCCTCTATCAAAAATT------ACGATAGATATAAACGGTGAGCATAGATCTTTTCCCTTAG---tttttttGCATTGCAACGTGTATattattttgt
i caeRem4.Crem_Contig24 C 0 I 2158
s caeSp111.Scaffold630   5523469 302 + 20921866 tttcagattgtgCGGAACAGTTGAACGGTATATTGGTGAAAAAagcgaagagaaaaagtcgaTAGCTTCCACAACAATagatgaagagaatgaagatgaGCTCAGCGATTATGAATGAAC--TTTCCGCA------------------AAAATACTC-------------------Agctattccatttttcaaagtgctttctctcatttgaaagcttttctttga------------ctatttttcaattttttttattta--ctttcattgaaaaactttcgCAATGATAGATATGAACGGTGCGCTTAGATC-TTTCCTTAG-----TTTTTCACATGGCAACGTgtacactttttt--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I

a score=1264.000000
s ce10.chrX               497442 231 + 17718866 CTGGAATTTCTCTTTTTTTTTTTGGTTTTTTTGTCTGGT-----CTTGTTTTCAAAAATAGAATCGATT--GATTGAGTACTTGGTTTAAATCAAATCACTATCAACTTAGTTCGAACATTTTGCAAACAGGTTTTGTTAAT---GATTTCAGATTA-AGTCGACGTAAACGAACAAGTGGTTGCAAATTCATTCAAATT--------CTTTTTTTTTGTTTAGTTTTTACTTACACTTTTTATATGTTT--------
s cb4.chrX              21030718 202 - 21540570 --------------TTTGTTTTTGATTGTCTTGATGAATAAAAACttaatttcacaaaaaaaaacatttctaagAGAG-AAATGGGCTGATCAGATTCGATATCAACTTAGTACCAATATCTTCGAAACAGGTTTCgctaattttgattttccattaCAGAAAGAGACAATTaatcatttcc--------------------------attttctcatatttcatct-------cactttttttattttc--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5523771 206 + 20921866 -------------------tggaaattttctcgataaat----ttttcgttt-------gaaGTCGTTT---------------AACTAGACAAATTTGATATCAACTTAGAGGGAACATATTTGAAACAGGTTCCGTCAATTTCGATTCTTGGTTTCAGATCAGGGAAGTCGGCCATTTTTGACAAATTCAATGCGAATATCTGGtgacttttttttactttggag-------tatttttgctattttttgaagttt
i caeSp111.Scaffold630  C 0 I 1837
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e caeRem4.Crem_Contig24   330468 2158 -  1162296 I

a score=633.000000
s ce10.chrX               497673 13 + 17718866 ----ATAGATTTATTTT
s cb4.chrX              21030920 17 - 21540570 tatgatacttttatttt
i cb4.chrX              C 0 I 650
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e caeSp111.Scaffold630   5523977 1837 + 20921866 I
e caeRem4.Crem_Contig24   330468 2158 -  1162296 I

a score=0.000000
s ce10.chrX               497686 751 + 17718866  
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030937 650 - 21540570 I
e caeSp111.Scaffold630   5523977 1837 + 20921866 I
e caeRem4.Crem_Contig24   330468 2158 -  1162296 I

a score=1273.000000
s ce10.chrX               498437 230 + 17718866 TTAGTCTTGTTCAGTTCTCCGTTTCA-AACCTGTGACTCTCAAGTGATTTTTCCTGTTTAAACTTTTTGGAAGGAACTAACTTTTGTGT-ATTTTTTTAAAATTTATACGCCTGAAGT------TCTCCAGAAATGTCA----AAACTTCATGGCATGGCTGTTAAATTTCAGCC------------CCACAACG-CATGCTAATTG-------GGCCCTCG-----AGGGGTAGAAACAGTGTGA-----ATTTGGA------AGAGGTGATAATTA
s caeSp111.Scaffold630  15396969 274 - 20921866 TTAATATTGTTTACtattctgtttcagaaactttgaa----aaattagttatCCTTTCACTTCTTATTGTTCtcaattacttttttcctGACTTCTTTGCAACACTCACTTCCAGAATCAACATTCCTTGGAAATTCCACataaaaattctcaaagtGTCAGTTACTTTTTGgccatttaaaaattcctaCAAAGACGTGCTAATTGTAGAAGAGACCCTCATCGGAAGACACAGAAATAGTGCGATGTCTCTGTAGACAGCAGAGAAGTGATAACGG
i caeSp111.Scaffold630  n 1837 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030937 650 - 21540570 I
e caeRem4.Crem_Contig24   330468 2158 -  1162296 I

a score=3834.000000
s ce10.chrX               498667 25 + 17718866 --TAACAGAGGGGTCC----TTTGATTGATG
s caeRem4.Crem_Contig24   830751 29 +  1162296 --TGGCCGAAGGGTCCTAAGTTTGATTGATG
i caeRem4.Crem_Contig24 n 2158 C 0
s caeSp111.Scaffold630  15397243 29 - 20921866 AATGG--AAGGGGTCCTAAGTTTGATTGATG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54       80834 3224 +   258924 I
e cb4.chrX              21030937 650 - 21540570 I

a score=-4693.000000
s ce10.chrX               498692 69 + 17718866 TTCTTCTCTCTTTGGTTCTCATTTTGCCGTTTTCTTTGC---ATCTCTCAATCTTGACTTACCTCTATTGAT-
s caeRem4.Crem_Contig24   830780 53 +  1162296 TTCTCTCTTCAT----------------GTATGTTTGGg---tcctcttctttcttccttatCACTATCACT-
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold630  15397272 45 - 20921866 TTCTCCA---------------------------CTGGGCGACCCTCTCATTTCCTACTAATCACTCACTCG-
i caeSp111.Scaffold630  C 0 I 4
s caeJap4.Scaffold54      175201 53 -   258924 tccctctctctc-----------------tctctccccc---ttcttttcttttcttttcacaattttccatC
i caeJap4.Scaffold54    n 3224 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21030937 650 - 21540570 I

a score=82110.000000
s ce10.chrX               498761 276 + 17718866 TAAAAAAGAAGAAAAAGATAAATTGTTGCCTCTCTTCGCTT-----TCTCTCGTGCCCCTCTCGTCAATATTTCTCA----TTTCTCATTACTCTAAACAACCGTAATTGGGGCTATCATCTTAACTAATCGATCCTCTTCACCTCCTCCTCCTCATCGTGTCGTCAGTTTCGGAAGCC---GAGACAAGGGACCGG-----------------------GGGAGGGG-GGAGGGGGACTGATAAATGACAAATGAGTGACCGTGAAGAATTGACGAGTTGAAAACAATACACAC----------CACTATTCTGTTGATGT
s cb4.chrX                509142 278 + 21540570 ------taaatatgaaaaaaaattgtt-tcttttttctccttttcatttctaacgcctc--------atttctttcttctcatctattttACTCTAAACGACCGTAATTGGGGCTATCATCTCAATTAATCGATCTTCCATTCTCCCCTCGTTTG-------------TTTCCGAggccgagaaaaaaaaagatgaggcAAGAGAG--------------GGAGAACG-AGAAAAGAACTGATAAATGACAAATGAGTGGCCGTGAAGAATTGACAAGTTGAAAACAATACATAC-AGAATCTATCACTATTCTGTAGACGT
i cb4.chrX              n 650 n 650
s caeRem4.Crem_Contig24   830839 271 +  1162296 --tcgagagaaagagaaataagTTGTTgcctcttctctctttctcttttctcgcgcctc--------atttctctct----gtctgttttactctAAACAACCGTAATTGGGGCTATCATCTTAACTAATCGAtcc----ctcctccttctcttt-------------tttcggagGCC--TACGACAAGTGATGAGGcaaga-----------------agagaatgaagaggAGAACTGATAAATGACAAATGAGTGACCGTGAAGAATTGACGAGTTGAAAACAATACACAT-ACAATCTACCACTATCCTGTTGACGT
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold630  15397321 226 - 20921866 ----------GAAGACACAGAATTGTtgcctcttctctct------cttcttgcGCCTC--------AATTTTCTCC----ACC--TCTTACTCCAAACAACCGTAATTGGGGCTATCAT-----------gatcc------tctctctctttgc-------------cTCTCGAGGCC------------AACgag-----------------------agaagacg-aagagacaACTGATAAATGACAAATGAGTGACCGTGAAGAATTGACGAGTTGAAAACAATACACACAACAATCTACCACCATCCTGTTGACGT
i caeSp111.Scaffold630  I 4 C 0
s caeJap4.Scaffold54      175254 231 -   258924 ---------AACAACAAGACAATTGTTGCCTCTTCTC---------TTTCTCGC-------------ATTG----------ATATTTCTTACTCTAAACAACCGTAATTGGGGCTATCAACTTAACTAATCAAT----------------------------------TGACGGAGGAG---GCAGTGATGAGTGAAACAAGACAATCGAGATGGGGGTTGGAAAGAG-AGATGAGAATTGATAGATGACAAATGAGTGACCGTGAAGAATTGACGAGTTGAAAACAATACTT------------CACTATACTGTTGATAC
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I

a score=-2096.000000
s ce10.chrX               499037 7 + 17718866 TCAGTGT--
s caeRem4.Crem_Contig24   831110 6 +  1162296 -TTGAAC--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15397547 5 - 20921866 --CGAAC--
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      175485 7 -   258924 --CGAGTGT
i caeJap4.Scaffold54    C 0 n 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX                509420 650 + 21540570 I

a score=2605.000000
s ce10.chrX               499044 10 + 17718866 GATGGTCAGA
s caeRem4.Crem_Contig24   831116  9 +  1162296 -ATGGTCAGA
i caeRem4.Crem_Contig24 C 0 T 46385
s caeSp111.Scaffold630  15397552 10 - 20921866 GATGGTCAGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492  0 -   258924 I
e cb4.chrX                509420 650 + 21540570 I

a score=138.000000
s ce10.chrX               499054 13 + 17718866 GTTTTGTAGAAAG
s caeSp111.Scaffold630  15397562 11 - 20921866 CTGT--TAGAAAG
i caeSp111.Scaffold630  C 0 T 3402
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492  0 -   258924 I
e cb4.chrX                509420 650 + 21540570 I
e caeRem4.Crem_Contig24   831125 46385 +  1162296 T

a score=0.000000
s ce10.chrX               499067 1097 + 17718866  
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492    0 -   258924 I
e cb4.chrX                509420  650 + 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T
e caeRem4.Crem_Contig24   831125 46385 +  1162296 T

a score=8949.000000
s ce10.chrX               500164 409 + 17718866 AAAACAAAAATTCATAGTGAAATTTTAAGTTGCTT---TATTTTTTCAAAA-----AAATTTGAGTAGCT---------GAAGCC---------CTTGCCCATCTTATATTTTCTTATCAATTTCACACATTTTCGT-TCTGAGATTTTTGATTTCTCAATTGTAACCCGTTGAAAATTACTTACTAACTGCGGTGCTATTTTCTTTTCATATTCTCTA-TCGTC-TTCACGACACAACATATCAAC-----------TTGTAACAGTAACAAAAAGAGACTTATCAACAATCGGTTGTTTCTTTCATTCTCT--CCTTCTTGCCAACCGTTTTTCTAGTGTCCGAAAGAAATGA---GAGATAATGATGAGTGAATGAGTGTG----TACGGGTGAACTGGTTATTTTTGCAGGCCAAAGAATGAACGAGTAACACATACTGTGTCCGTTTTTTGGA
s caeRem4.Crem_Contig24   332626 449 -  1162296 AAAACAAGATTTTACATATATATGTGGTATTGCTTCCATACTTTagcaaaatcttgaaattgaGATAGCTTCCGGTCTTGAAGTCACACGTCTCCTTGCCCtccttttttataatttttgattacTTATTCTTTCACATCTAAGGTGTC--ATTTTTCGCTTCtatcttctcaaatttcccTTAT---CTTTTCTGTTCCCTTATGCCTAGATTCTTGACTCGTAATTTCTGACCCTTCAAGTCAATGTTCGTTGTCTCTACAACA-TCACAGAAAAAACCTTATCAATGTTT--CTTTTCCCTCTAtttttttGCCTTCTTGCCAACAGTTTTTCTAGTGTccgaaaagaatgaaaagagataATGACGAGTGAATGAGTGTGATTGTATGAGTAAACTGGTT-CTGTTGCAGGGCAAAGAATGAACGAGTAACGGTTACTGtccaaattttgtgaa
i caeRem4.Crem_Contig24 I 2158 I 112
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492   0 -   258924 I
e cb4.chrX                509420 650 + 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T

a score=0.000000
s ce10.chrX               500573 1436 + 17718866  
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492    0 -   258924 I
e cb4.chrX                509420  650 + 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T
e caeRem4.Crem_Contig24   333075  112 -  1162296 I

a score=455.000000
s ce10.chrX               502009 5 + 17718866 AAAAT
s caeRem4.Crem_Contig24   333187 5 -  1162296 aaaat
i caeRem4.Crem_Contig24 I 112 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492 0 -   258924 I
e cb4.chrX                509420 650 + 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T

a score=2642.000000
s ce10.chrX               502014 171 + 17718866 AAAAATT--CCAGATTTTA------GAAGAATTAAAGCATTGAGTGGTAAAGGAAAGTG--CAGTGCATGGGAAAATAATTGGTTGCACATTAGTCATACTGATACCCAGTTTGGAAAAGAAAATAT-GAAAGGAAATAATATACATAACACAGCTTGAATCTTTGAATTTTAAATCACAGA-----
s cb4.chrX              21031587 127 - 21540570 aaaaatt-----tatttga-------gaaaattaaagcTA-----GGAACAATAAAGTGAATAGTGCTGCG-----CATTTTGCTGCACATCAGTCA---------------AGGATTGGAGACTAGTGA--------GATATACATaaca------gatttttagaa----atatcaCAGA-----
i cb4.chrX              I 650 I 96
s caeRem4.Crem_Contig24   333192 136 -  1162296 aaaaatcatgTAAATTTGAAACGAAGGAATTTTAAAGCTATTAGTGGTAAATTAAAACGATCAGTGCAG-----------TAGTTGCACATCGGTCA---------------AGgatgagaaaactg-ga--------aatataCATG------------CATTAGAA----ATATCACAGAACAGG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492   0 -   258924 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T

a score=65.000000
s ce10.chrX               502185 27 + 17718866 CTTGA-TAGATATGGTTAATAAAGGAAA
s caeRem4.Crem_Contig24   333328 27 -  1162296 GTAGACTAAATGGGATCAATATAA-AAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e caeJap4.Scaffold54      175492  0 -   258924 I
e cb4.chrX              21031714 96 - 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T

a score=-2662.000000
s ce10.chrX               502212 72 + 17718866 GAGGGGGAAAGTAAGATGACAA--AAGTGAGCAGCTGAAACATAAGTAGCACAAAACATAGTGTAAAAGTTG-----TC
s caeRem4.Crem_Contig24   333355 56 -  1162296 CTGCAGGAAAATA-----------------------GAAACCAAAGAGAAATAGAATATTATGCCACAATTAAACCCTC
i caeRem4.Crem_Contig24 C 0 I 7
s caeJap4.Scaffold54       84058 60 +   258924 GAggggggaaaaaaaataaaaatcaaata-------atgtCACAAAATACACAGAGAATTATTCTAC------------
i caeJap4.Scaffold54    I 3224 C 0
e caePb3.Scfld02_254      122255 5803 +   193288 I
e cb4.chrX              21031714 96 - 21540570 I
e caeSp111.Scaffold630  15397573 3402 - 20921866 T

a score=2025.000000
s ce10.chrX               502284 3 + 17718866 AGT
s caeRem4.Crem_Contig24   333418 3 -  1162296 AGT
i caeRem4.Crem_Contig24 I 7 I 1
s caeSp111.Scaffold630   5525814 3 + 20921866 AGT
i caeSp111.Scaffold630  I 1837 C 0
s caePb3.Scfld02_254      128058 3 +   193288 AAT
i caePb3.Scfld02_254    I 5803 C 0
s caeJap4.Scaffold54       84118 3 +   258924 AAT
i caeJap4.Scaffold54    C 0 I 1
e cb4.chrX              21031714 96 - 21540570 I

a score=89544.000000
s ce10.chrX               502287 243 + 17718866 TAGGAAAGACTACGCACTGCTGTAGCACCAGTTTCCAGAGACATTTTCAGAGCATGGAAATGACTGAAGCCTTGTGTGAGGGCAATATTATGAAGGACCGGAAGCTGTGGAATCCCGTGGAAGGGGTTTTTGGGTAGAATTGGCCCCAAATGAGCACTCGTCGGTGAATGGGTCTTCTTATGACGTAGCAGGTTGTCTTTCCTGTTGAATCTGAAAATATACATGTAATTC--GTTTCCATTTT----------T-
s cb4.chrX              21031810 244 - 21540570 TATGAGAGACTAGGTACAGCGGTTGCTCCATTTTCTAGACTCATTTTCAATGCATGGAAGTGATTCAAGCTCT------GAGCCAAACTGTGAAGAGGCGGTAGTTGCGGTAGTGGGTGGAAAGGATTTTTTGGTATCAGCGTTGCTGCAGGGGTTTCGTTTTGATTGTGCGTTTTCTTATGCCGAAGTAGATTATCTTTTcgattgaatctgaaaatg---atctagaTT--ATTCAAATTAGATctgcttttt-
i cb4.chrX              I 96 C 0
s caeRem4.Crem_Contig24   333422 240 -  1162296 CAAGATAAACTGCGAACTGCCGTTGCACCATTTTccattgtcattttcaaagcatgaaaatgattgaaacttTGTGGAAGAGCAAGATTATGAAGATTTGGTAACTGCGGTATTCCATGGAAGACATTTTTTGGTATGTGTGGTACTATCGGAGTGTCCGTCGGGTTGTGGGTTTTCTTATGACGAAGTAGATTGTCTTTTCTGTTgaatctagaaaaa---aggtAATTT--TTTGCTATTAG----------T-
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold630   5525817 239 + 20921866 TAAGATAAACTACGAACTGCAGTTGCCCCATTCTCTAGAGACATTTTGAGAGCGTGAAAGTGACTGAATCCTTGTGTCAAGGCAATGTTATGAAGTCCTGGGATTGGGGTAAGTGCTGGGAAAGGGTTCTTGGGCAGTATTGG---AATGTGTGATTCTACTGgattgtgagttttcttgTGTCGAAGTAGATTGTCTTTTCTGTTGAatctggaaata---aaaaagtttgcCATAGGTTTTA----------T-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      128061 235 +   193288 CAAGACAACCCACGAACAGCCGATGCGCTATTTCCCAGgttcaaattcaatgaatgATGATGAGCGAAACCTTGTGCTAAAGCAATATTGTGAAATACTGGAATTGACGGGAGGGATTGGAATATATTGTTTGTAAGCTTTTGCCCGATACCAGCATTTATCGCCAAGTGTGtttttttGTGACGTAGCAGATTGTCCTTTCGGttgaatct-----tt---aaaaaatct--cATAAGGTCAA----------T-
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       84122 235 +   258924 TACGATAAACCATGAACCGCTGGAGCTCCACCCTCTAATGACATTTTCAATGCGTGATAATGGCTGAAGCCAGGTGTTAAAGAGATGTTAGGAAGTCCGGGGATCTGTGCAAGAG---GGAAGTTAACCTTGGAGAGTATCTGTCCCATGTGACCCGCATTTGACGTGTGCGTTTTCTTATGCCTAAGCAAGTTATCCTTCCGGTTGAACCTGCAAGTT---GT---GTtt--cttgccttttt----------tt
i caeJap4.Scaffold54    I 1 I 4

a score=-45240.000000
s ce10.chrX               502530 164 + 17718866 AGGGTTTCCATTTTTTCATTTTATATTTGAAAAGCCTTATTTT-TTACCTAATTTTTGTTACCTAACCT-----AATTTTTA--------------ACCTAA--------TTTTGTAAACTCGTTTTC--------------TAACATTTAAAACAAGTAAAACCAAGCTGTCAAAGGAAGGTAATAGTTTTCA-----------------------AAGTAAGATGCC-------------
s cb4.chrX              21032054 138 - 21540570 ctgatttttctggttttttttt------cgaaagtttcaattA-TCAAGTTGTTCATTCAAACTTAAGT-----TACtattc--------------agtttt--------ctttttaaattttttgac--------------caGTTTCTGACTCAAGTAACAAATACT------------------GTCTA-------------------------AAGCGTTTTGCC-------------
i cb4.chrX              C 0 I 118
s caeRem4.Crem_Contig24   333662  98 -  1162296 GGGAATTTTTTGCTATC---------------AGTGTAAATGAGTCGGGTAATGTGTTCA---CCGGAC-----GATTCTTA--------------AAGAAT--------TTCCGTATGTCATTCAAT--------------CCGTTTTCATCGGAA-------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526056 231 + 20921866 Gagaattatcaaaattcatttttcttaatcaaaattcaatttt-cgaagcgttatcttcacttttctctcccTCAATTTCTCAGAGAGAAGAAACTAAGAATTAAGAT--TTTCTGAGAACTCGTGAGAAAATGTGCATTCACGAGTTATGAAAAAACTGTGGGAAAGCTGAC--------TTTCTTGTCTATATCACTTCCACCCCCACaaactccaaaaatcatACTGTATTTCTGTCCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      128296 155 +   193288 TCGAA-----AGGTTTTATTGCTTATAGTGGACAGttcaattt-cataatttccttTTTAACATTGTAT---TTGATTTCTC--------------TAGAATTTCGGTGCTTGTTTTGAACACCGGAT--------------CAGTTTgtcagaaaactaaaaaaaacc------------------gtttatatca--------------------aaaagttatacGG------------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       84357   4 +   258924 I

a score=-7342.000000
s ce10.chrX               502694 45 + 17718866 ATCATTCCTAGAAATTCCTTGAACTCTTAT----------------------------------CATT-------------CTTCAACCAAT----
s caeRem4.Crem_Contig24   333760 29 -  1162296 -CCCTT---------------AACTACCAT---------------------------------------------------GATCAATCACTCAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526287 83 + 20921866 -tccattcttcaa--------aacttttttccatccATTCTATTCATTTCCGTCCATAAATGTGCATTGTTAATCACACTGGTCTATTCAAT----
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_254      128451 20 +   193288 ---------------------AACTTCTAT---------------------------------------------------GTTCACCCAAT----
i caePb3.Scfld02_254    C 0 I 98
e caeJap4.Scaffold54       84357  4 +   258924 I
e cb4.chrX              21032192 118 - 21540570 I

a score=6271.000000
s ce10.chrX               502739  87 + 17718866 CATTCTTC---------CTATCACCATAACTACTTTACAAATTGCTTCTCATTATCACTTGGGTCAAATTCGACGTGCCAAGGACGCC--------------------AGTCTCAT------------------------------
s caeRem4.Crem_Contig24   333789 134 -  1162296 -AACCCTCATTAAATTGTTATCAATTT-----CTTT---AATTGCTTCTCATTATCACTCAGGTCAGTTTCGAAGTGCCAAGGACGCC---GGGGACGCCGTTTCGTCAATCTCGTCCTCACCCCTTCTTTGGCCTCCCACCTCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526374 116 + 20921866 CACCCCTT---------TCATCATTAT-----CTTT---AACTGCTTCTCATTATCACCCAGGTCAGTTTGGACGTGCCAAGGACGCCAGAGGGGACGAC---------AACTTGcccccctcccccctcccGGTCGCTGCT----
i caeSp111.Scaffold630  I 4 C 0
e caePb3.Scfld02_254      128471  98 +   193288 I
e caeJap4.Scaffold54       84357   4 +   258924 I
e cb4.chrX              21032192 118 - 21540570 I

a score=3883.000000
s ce10.chrX               502826 30 + 17718866 TCCTCACATGACAA---TATTATGT----------------TGCGCTTT
s cb4.chrX              21032310 25 - 21540570 TTCACACGTGACAAATG------------------------AGGGCTTT
i cb4.chrX              I 118 C 0
s caeRem4.Crem_Contig24   333923 33 -  1162296 TCCTCACATGACCAATATATTATGT----------------TGCGCTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526490 46 + 20921866 ACCTCACATGACAA---TATTATGTCCCCTCTCTGGTTGCGGAGgcttt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      128471 98 +   193288 I
e caeJap4.Scaffold54       84357  4 +   258924 I

a score=-1735.000000
s ce10.chrX               502856 30 + 17718866 GTTTGAAAA---GACAAAAAGGGAAGCATAGAC
s cb4.chrX              21032335 28 - 21540570 GTTTGAAAC---AACACACAGAGACAAATTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   333956 28 -  1162296 GTtt--aag---aatgaaaagagaatagGTGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526536 33 + 20921866 gtttcaaaaataatgaaagaagaatgggGTGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      128569 32 +   193288 GATTGAAAGCCAAACAATTGAGGAAGAGGTAT-
i caePb3.Scfld02_254    I 98 C 0
e caeJap4.Scaffold54       84357  4 +   258924 I

a score=134203.000000
s ce10.chrX               502886 158 + 17718866 TG--GGCAAGTTACTCACTTTTTGTGGCAGTGTGGACATGTGTGTGGACGGAGGCCGGTATGAATGAACATGTGCTTTTTAAGGAGGAACTTGTTGGCGAACCGTTTGCCGCAATTGTTGTGCATGCATATGAACGGTTTCTCCAGGGCTGAAA--AGTTGA
s cb4.chrX              21032363 157 - 21540570 ----AAGGTGCGACTTACTTTTTATGGCAGTGTGGACACGTATGTGGACGGAGACCCGTATGAATGAACATGtgctttttcagaagaaacttGTTGGCAAACCGTTTACCGCAATTGTTGTGCATGCAAATGAACGGTTTTTCGAGAACTGCAAA-ATATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   333984 159 -  1162296 T---AAAAAGTTACTCACTTCTTATGGCAGTGTGGACAAGTGTGTGGACGCAGTCCAGTATGAATGAACATGTGCTTTTTCAGAAGGAACTTGTTGGCAAATCGTTTTCCACAATTGTTATGCATACAGATGAATGGCTTCTCGGCGgctgaaaacatttga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526569 154 + 20921866 TAAAAAGACGTTACTCACTTTTTATGGCAATGTGGACAAGTGTGTGGACGGAGTCCCGTATGAATGAACATGTGTTTTTTGAGGAGAAACTTGTTCGCAAACCGCTTTCCGCAATTATTATGCATACAAATGAACGGTTTCTCGAgcactgaaa--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      128601 157 +   193288 ----AATGCGCTACTTACTTTTTATGGCAATGTGGACAAGTGTGAGGACGGAGGCCGGTGTGTATGAAcatgtgttttttcaaaagaaacttgTTTGCAAATCGTTTTCCACAATGGTTGTGCATACAAATGAACGGTTTCTCAGCAGCTAAAAG-AGCTGA
i caePb3.Scfld02_254    C 0 I 33
s caeJap4.Scaffold54       84361 151 +   258924 -----tgggcaCACTTACTTTTTATGACAATGCGGGCAGGTATGCGGCCTGAGACCGGTGTGAATGAACATGTGCTTTTTGAGCAGGAACTTGTTTGCAAATCGTTTACCGCAGTTGTTATGCATACAAACAAATGGCTTTTCGGCCgctgaaag-g-----
i caeJap4.Scaffold54    I 4 C 0

a score=-7772.000000
s ce10.chrX               503044 39 + 17718866 AGGTTAATAGAGATTTTAAAAAAAGTAT---AAGAAAGCAAC
s cb4.chrX              21032520 30 - 21540570 ---------AAAAGCTTAAAAATCAAAC---TGTCCGAGAAA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   334143 28 -  1162296 ---------atgaaaataaaaatcctat---aattcaaaa--
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold630   5526723 35 + 20921866 ----ttattttttcatttgagatACAAT---GATATGGAAAC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       84512 34 +   258924 --------aaaaaaaattgaatttgaatttaaattggggaat
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      128758 33 +   193288 I

a score=91772.000000
s ce10.chrX               503083 231 + 17718866 ------TCACCACAGTCTCCATCTCCACAGTTCGGTGATATCATTGGTCCGGTT---GAAGACGATGACGACTCATTTTCAGTGATATCACCAGTTGATGGTGATGGTGACACTTCAATCTCTCCCTCGTCACTTTCCACGTCAATTTTTATATCTTCTGCATCAGATTCTGTGAAGTGATTTG------AAACTGGC------------------------AGTTGTGGCACGGTTTTCATAAAGTTGGCGGCGTGCATGGTTCTGAAA
s cb4.chrX              21032557 223 - 21540570 --------------ATCAGCATCACCGAGTGTTGGTGACGTGAATGGTCCACtg---gaagaagacgatgacTCATTTTCCGTGACATCTCCCGTTGAGGGAGAAGGAGATACTCCTATTTCGCCTTCATCGCTTTCgatatcaatttttacatCTTCTGCATCCGAATCGGTGCCAGAGAAAG------CTAGATGA------------------------GGAGGACTTACATTTTTCATCATGCTGGCGGCGTGCATgctcctgaaa
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   334178 237 -  1162296 ---------tcaCCATCTCCATCACCAGAGGTTGGTGAGGTCATTGGTCCACTGTTCGAAGAGGACGaagactcattttcagtcatgtCAGCCGTGGATGGTGATGGCGATACTACTGTTTCTCCTTCATCACTTTCTACATCAACTTTTACGTCTTCTGCATCCGAATCTGTGGCTGAGGATT------GCAGTGGAACT------------------CTCGTAGGGctcactttttgaatgaatgaagCGGCGTGCATGCtcctggaa
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold630   5526758 231 + 20921866 ------TGACTTGAATCCCCATCTCCGGACGTTGGTGACGTCATAGCGCCActg---gaagatgaagaagactCATTTTCAGTGATATCACCATTG------GAAGGAGATGGTGACACCTCTCCTTCATCACTTTCTACCTCaattttgatatcttcagTGTCCGACTCGGGGCAACTAGGTTGTATAGGAATCGGA------------------------GGATGACTGGCATTTCTGAAGATATTGGCGGCGTGCATGCTCCTGAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      128791 231 +   193288 ------TTACCACAATCTCCGTCACCGGATGCTGGTGACGTCATCGGTCCACTC---GATGTTGAGGAATAATCATTCTCCGTGATATCTCCGCTGGATGACGAAGGAGATGTTCCCATTTCTCCATCATCACATTCTACGCCAATTTTCACATCTTCCACATCGGATTCCGAATTATTAGTTT------GAAATGGA------------------------GTGCCAATTATGTTTTTCATGAGACTGGCTGCGTGCATACTCCTGAAA
i caePb3.Scfld02_254    I 33 I 906
s caeJap4.Scaffold54       84546 255 +   258924 tcattgaaattacaattttcaacTTCTCCGGGGGATGAAGACAGTGGCGCACTG---CTA------GAGCTCTCTGTTTCCGTCAAATCGCCTGATAACGGAGATAAAGACATTTCCACTTCCCCATCATCACTCTCAATGTCTATTTTGATGTCTTCCGAATCCGAATCGTTTGATGTGGTTT------GTGGCGGCGCGTTCGCATTCGCATTCGCATTCAGAGGCACAGTGTTCTTCAAAAAGCTGGTGGCTTGCATACtcctgaaa
i caeJap4.Scaffold54    C 0 C 0

a score=910.000000
s ce10.chrX               503314 1 + 17718866 A
s cb4.chrX              21032780 1 - 21540570 a
i cb4.chrX              C 0 I 138
s caeRem4.Crem_Contig24   334415 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5526989 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       84801 1 +   258924 a
i caeJap4.Scaffold54    C 0 I 98
e caePb3.Scfld02_254      129022 906 +   193288 I

a score=-790.000000
s ce10.chrX               503315 3 + 17718866 CAA--
s caeRem4.Crem_Contig24   334416 3 -  1162296 aaa--
i caeRem4.Crem_Contig24 C 0 I 56
s caeSp111.Scaffold630   5526990 3 + 20921866 --acg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I
e cb4.chrX              21032781 138 - 21540570 I

a score=332.000000
s ce10.chrX               503318 6 + 17718866 AAATTT
s caeSp111.Scaffold630   5526993 6 + 20921866 atattt
i caeSp111.Scaffold630  C 0 I 895
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I
e cb4.chrX              21032781 138 - 21540570 I
e caeRem4.Crem_Contig24   334419 56 -  1162296 I

a score=0.000000
s ce10.chrX               503324 770 + 17718866  
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802  98 +   258924 I
e cb4.chrX              21032781 138 - 21540570 I
e caeSp111.Scaffold630   5526999 895 + 20921866 I
e caeRem4.Crem_Contig24   334419  56 -  1162296 I

a score=301.000000
s ce10.chrX               504094 17 + 17718866 CATATATCTCTCGCTCG
s caeRem4.Crem_Contig24   334475 17 -  1162296 CAAGTATCCTTTATCCT
i caeRem4.Crem_Contig24 I 56 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I
e cb4.chrX              21032781 138 - 21540570 I
e caeSp111.Scaffold630   5526999 895 + 20921866 I

a score=903.000000
s ce10.chrX               504111 9 + 17718866 TCTTCATCC
s cb4.chrX              21032919 9 - 21540570 TCGTCATCC
i cb4.chrX              I 138 C 0
s caeRem4.Crem_Contig24   334492 7 -  1162296 --TCTACCC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I
e caeSp111.Scaffold630   5526999 895 + 20921866 I

a score=20977.000000
s ce10.chrX               504120 239 + 17718866 TTATC-AGTGTTCCTCTCAGT----------------CTCATTTCCTCCA-------TACTCAAT-TGGTAATCAATCTTGACGA----CGAATGAATTACCTC-----CTTCTTTTTCTCTC-CATTGCATCTAGTGTTTCTCAAT--TGCGGCAAGTTGT------TGTGTCCATACCC------------TCTACAGTAAC---CGCCCTCAATCTCGACGTGTCTCTCTCTCTCTCTTTCTCTGTTCCG-CAACACATCAAT--CCTCTTCACTGATTCCCTAATTTTTGATTTTT---
s cb4.chrX              21032928 247 - 21540570 GTATC-CTCATTCCCTTACAATCAGTCTGTCGTTTCCACTATCTTTTACAACGCT--TAGGCAAT-TGGTAATCAATCTTGACGACGGGCGGATAAATTACCTC---TTCT-TCTCATCTCTTTCAAT---TCTCA-CTCACTCAACATTGCGGCAAATTGT------TGTGTCCATTTAGTTTCTCTCTccctctacagtaac---cgaccTCCCTCTC------------------------------gagacaaaatgttttttcatgaCATATTAACTCAgt-attttttgcttt----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   334499 199 -  1162296 TTATC-ATTGTTCTCATTCAA--------------------------ACAACATTTGTAGGCAATGTGGTAATCAATCTTGACGA----CGCATGAATTACCTC---TTCTCCCTCTTATCTT--------------CTCACTCAATTGCGCGGCAAATTGT------TGTGTCCGTTTTG------------TCTACAGTAAC---TGCCCTCAATCTT------------------------------CCG-CAACATATCACTCTCTTATCCACTGATTTCTA-ATTCCTAATTCTT---
i caeRem4.Crem_Contig24 C 0 I 43
s caeSp111.Scaffold630  15394171 219 - 20921866 TTATCAAATGTTcccccccAC----------------------TCTTTCAG------TGGGCAATGTGGTAATCAATCTCGCCGA--GACGAATGAATTACCTCCCTTTCTCCCTCttatctt-catt---tctca-CTCACTCAAT--TGCGGCAAATtgttgtgtgtgtgtccgtttcc------------tctacagtaaccggCGCCCTCAATCTC-----------------------CTTCTTTCCG-CAACATATCACT----------CTGATTTCCT-CTTCCGAATCATTGGa
i caeSp111.Scaffold630  T 3402 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802  98 +   258924 I

a score=641.000000
s ce10.chrX               504359 30 + 17718866 AACAAATAAGTGGAAAGGAAGAAGCAAAGA--
s cb4.chrX              21033175 23 - 21540570 -------aaatGAGAATGAAAGCgaaaaag--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15394390 32 - 20921866 gggaagaaaatggaagaacaaacaaaaaagga
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I
e caeRem4.Crem_Contig24   334698 43 -  1162296 I

a score=-5549.000000
s ce10.chrX               504389 49 + 17718866 GGTTTTCCA-----GATGGTAATC---TACACT--TGTCTACACGATATAACCTACTCC
s cb4.chrX              21033198 57 - 21540570 aattttagaatattgaGAATAATCGGATAATTCAAGATAAACATCTTTTGTC--CGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   334741 38 -  1162296 GGTTTCAGA-----GATAACAATC-----------TATTAGCATTTTCT-----CCTCA
i caeRem4.Crem_Contig24 I 43 C 0
s caeSp111.Scaffold630  15394422 33 - 20921866 ------------------------gaatatTTC--GATAAGCATCTCTTAGCATACTCA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84802 98 +   258924 I

a score=37176.000000
s ce10.chrX               504438 67 + 17718866 AAAGGGC-----GCCGACTAGTGAAGTTCTCACATCGAATTAGTCGAAATTGGTGTTGAGCTATTTATGCGA
s cb4.chrX              21033255 65 - 21540570 AAAGCAC-----ACCGACTTGTGAAACTCTCACATCAAATTAG-ACAAATAGGTATTGAGTTATTTATG-AC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   334779 67 -  1162296 AAAGGAC-----ACCGACTTGTAAAGTTTTCACATTGAATTAGTAGAAATAGGTGTTGAGCTATTTATGCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15394455 67 - 20921866 AAAGGGC-----ACCGACATGTAAAGTTCTCACATCGAATTAGTCGAAATAGGTGTTGAGCTATTTATGCGT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       84900 71 +   258924 -AAAGGCTGCCGGCCGACATTGAAAGTTTTCACATCGAATTAGGCAAAATTCGTGTTGAGCTATTTATGGGA
i caeJap4.Scaffold54    I 98 I 232
e caePb3.Scfld02_254      129022 906 +   193288 I

a score=-6233.000000
s ce10.chrX               504505 62 + 17718866 ---TTGCCT---------------ACCCCGCTATTCTTACAAGGCCATTC---TAACGGGGTTTCCGGAAAATTATTG-------------TTCAG
s cb4.chrX              21033320 83 - 21540570 ATGTTCCCTCTAAAGAATTAGAATACGCTCCTTTATTCTCAAGGTCTTTCACTAAATAGAGTTTCCTCCAGTTTATTT-------------ACCGG
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   334846 85 -  1162296 ATGTCCCTTATGTAAGGATATAAAATTTCCTTGCATCGTCAAGGTCTTTC-----------TTTCCTCATATCGTTTTTGGATAACTAGCAACCAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15394522 50 - 20921866 ---TTCCTTATGGGGCATCAAA---------TGTAATTTCAAGGTCTTTAACGGA------TATTCAC----------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=-1063.000000
s ce10.chrX               504567 36 + 17718866 TTTTTTAAAATTCGAATGCCTCAAAAGTTATAGTGC---------------------
s caeRem4.Crem_Contig24   334931 54 -  1162296 TTGTTTTGGGTGCGAGGGTGGTAAGATAGATGAGGTAAGATGG---CGATGACAGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15394572 46 - 20921866 ---TTCTCGACGCG--------AAGATCGATGAGGTAAGATGGTGTCGACGACAGTT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e cb4.chrX              21033403 38 - 21540570 I

a score=1129.000000
s ce10.chrX               504603 56 + 17718866 TGATTGAGACATGACACTC--------AAATTGAGAAGTGGAGA------------------------TTTCCCTCAC-TTACTCCGAT
s cb4.chrX              21033441 86 - 21540570 TGCTTGATCCTTgattctagatttcaaaaggTGAGAAGTTGAgatgaaactttttcgaaGTGTTTCATTTTCCCTCGC---TTCCTAAT
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   334985 69 -  1162296 TGATTGAAACGTGACACTTGATT----AGGGTTAGA--TTGAGA-------ATCGCAAA-------AGTTTCCCTcactatttttccat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15394618 67 - 20921866 TGATTGAGATGTGACATTa---tttgaagaggaaga----gagg-------aaCCCTTA-------AGTTTCCCTCAC-CCAGTTCGAT
i caeSp111.Scaffold630  C 0 T 16556
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=3816.000000
s ce10.chrX               504659 122 + 17718866 TTTGATCAAGATAA-------------------GGGTGACATTCATCACGATCAATCAAGGTGTTGGTCGCGTTGAA-----------------------------------------GTGTTGATTAATTTCTAGGT--GGTTTTCGAGGAGATTTATTCAATTTTGAAATGAATAAGGTCAT
s cb4.chrX              21033527 170 - 21540570 TTTGATT-AGATAAGACCACCTTCGGAGAG---GACAAGCATTCGTCA--ATCAATTAGGTTGGTGGATTTTtaaagtgagagagagagagatagaagTTAGAGGGAAGAGGGAAGAGGTGGTGATTGGTTGAACAGAGTAGTTATCGAA--GATTAATTTCATTTCG------ATGAGatcat
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig24   335054 145 -  1162296 tttgatc-AGATAAGGCCACCCGGGGGGAGACAGGGAGACATTCATCAAGATCAATC---TTGGTGGATTTTTCGAG-----------------------AGAGGGGAGAGCGA--GGGTGTTGATTGATTGTGATGA--AGTTTTCGAA-CGATTAATTTGCCTAAA------ATAAGGTCA-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e caeSp111.Scaffold630  15394685 16556 - 20921866 T

a score=-1209.000000
s ce10.chrX               504781 140 + 17718866 CCAGTTTTCTTATCTGAAGTGACAAGAACAACAAAAA----------GTGAACC----------ATTGTAAATTGCTTT-------TTTTGTTCGG--GCTAACTATCTTCCTC--TTTCTGATGTCCCGGATGCCAAAT----CAATTGCTTTTCTGGCTGCAA-------------------CAAAATTATG
s caeRem4.Crem_Contig24   335199 177 -  1162296 ----------------GAGTGATACAAACACCCCAAACGCGATGAAGGCGCGCCTGATCTTAAGATTTTGAATTGTGTTCAGATAATTCTGGTTGTCTGCTACATATCTAGCATGATACCCAATGAGGAGAAAGCAAAATGtgtcaagt-tttttttgccaacaattttttattgccATCCATCCAAAAATATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e cb4.chrX              21033697 103 - 21540570 I
e caeSp111.Scaffold630  15394685 16556 - 20921866 T

a score=2196.000000
s ce10.chrX               504921 19 + 17718866 GTTGCCATCCATTT---AAGAT
s cb4.chrX              21033800 18 - 21540570 GTTGCCATCTCTGTCTC----T
i cb4.chrX              I 103 C 0
s caeRem4.Crem_Contig24   335376 22 -  1162296 GTTGCCATCTATCTGTCGAGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5527894 14 + 20921866 GTTGCCATCCATAT--------
i caeSp111.Scaffold630  I 895 C 0
e caePb3.Scfld02_254      129022 906 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=44676.000000
s ce10.chrX               504940  90 + 17718866 GATCAGACCAGTTACCAGTTGATTTATTATCACCTACATTTGTTTACGCTCATCA-TCACCGTCGTCACTCC------TT--------------------CTCTCGAGAATGCGGTC
s cb4.chrX              21033818 110 - 21540570 GGTCAGACCAGTTACCAGTTGATTTATTATCACCTACATTTGTTTACGCTCATCATCTACT-TCATTCCCCTCTTT--CTCGCAAGACGACCGACC----GCTACAAAAATGCAGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   335398 115 -  1162296 GGTCAGACCAGTTACCAGTTGATTTATTATCACCTACATTTGTTTACGCTCATCA-CTAAC-TAACTCCTCTGTGTCCCTCCCTAGACGACTGACAACCGACCACAAAAATGCGGTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5527908 105 + 20921866 GGTCAGACCAGTTACCAGTTGATTTATTATCACCTACATTTGTTTACGCTTAACT-CTATT-TTTCCTCCCT------TGCCTCGCCTTGTCgtca----accaaaaaaatgcGGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      129928 104 +   193288 GGTCAGACTAGTTACCAACTGATTTATTATCACCCACGTTTGTTTACGCTCAACA-TTAAT-TTTTC-CTCT------CAACCAATAACAGCGGCC----GCTACAAAAATGCGGTT
i caePb3.Scfld02_254    I 906 I 150
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=6375.000000
s ce10.chrX               505030 60 + 17718866 --CGGGGGCA----AGTTACCTCCT------TTACTCTGTCTCT------------CTTTCTCCGGGGACGGGCGGTTACTGTA
s cb4.chrX              21033928 52 - 21540570 --CCGGGGCAAGTTAGTTACCTCtc------tctcctcctt---------------ttttttccg---------ggttactgta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   335513 69 -  1162296 --CGGGGACA----AGTTACCTCTCAATTCTTCTCCCccttacttttttctcactcctttttccg---------ggttactgta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528013 36 + 20921866 CTGGGGGGCa----agt--------------tcac---------------------ttttttccg---------ggttactgta
i caeSp111.Scaffold630  C 0 I 55
e caePb3.Scfld02_254      130032 150 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=-4741.000000
s ce10.chrX               505090  77 + 17718866 GTTTTCCTATTATACT--CCT-------------------------CCCCCTCCGCTATCTTCTCAAACTTTCA-----------CAACGAGCAGCAACATCC-ATACCCGTTTCA
s cb4.chrX              21033980 100 - 21540570 -tccTTCTATTCTACTTGCTTTTTTCGGAAGAGCAGCACGTCgacaaccccccccccccctcccccaTCAATtgttgaaataaaaaaagaaaaagcga--------aCC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   335582  88 -  1162296 gtgccTCT----------TCTTTTATGGGGGAG----GTGTCAAT-GCTCGTTGtctctctccccctttttttg-------------aGAAGCATCGACACCCTATACCAATTGta
i caeRem4.Crem_Contig24 C 0 I 29
e caePb3.Scfld02_254      130032 150 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e caeSp111.Scaffold630   5528049  55 + 20921866 I

a score=0.000000
s ce10.chrX               505167 9 + 17718866 ATTGTCTCT
e caePb3.Scfld02_254      130032 150 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e cb4.chrX              21034080 0 - 21540570 C
e caeSp111.Scaffold630   5528049 55 + 20921866 I
e caeRem4.Crem_Contig24   335670 29 -  1162296 I

a score=158.000000
s ce10.chrX               505176 3 + 17718866 CAT
s cb4.chrX              21034080 2 - 21540570 -AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   335699 3 -  1162296 CAA
i caeRem4.Crem_Contig24 I 29 C 0
e caePb3.Scfld02_254      130032 150 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I
e caeSp111.Scaffold630   5528049 55 + 20921866 I

a score=-1684.000000
s ce10.chrX               505179 17 + 17718866 TTGTTTT-----GTGTGAAATA----------
s cb4.chrX              21034082 31 - 21540570 TTGTTCT-GACGATGAGAACTGATTGGGAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   335702 27 -  1162296 TTGGTTT-GACAATAGGAAGTGAT----ATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528104 17 + 20921866 ttggTTTAAACAATGGG---------------
i caeSp111.Scaffold630  I 55 C 0
e caePb3.Scfld02_254      130032 150 +   193288 I
e caeJap4.Scaffold54       84971 232 +   258924 I

a score=30800.000000
s ce10.chrX               505196 56 + 17718866 AACAAAAGG-TAGGAATGCGTCAG---CCGGGAGG-----CGCCTACTGATACAGTTGAACAAGG---
s cb4.chrX              21034113 55 - 21540570 AACAATAGG-TA-AAATGCGTCAC---CCGGGAGG-----CGCCTACTGATACAGTTGGGTGAGA---
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig24   335729 53 -  1162296 AACAATAGG-TT-AAATGCGTCAC---TCGGGAGG-----CGCCTACTGATACAGTTGGGTAA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528121 58 + 20921866 AACAATAGA-TG-AAATGCGTCACCTCCCGGGGCC-----CCCCTACTGATACAGTTAGGTAAGC---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      130182 59 +   193288 AACAATGGGTTA-AAATGTGTCACCAACCGGGAGA---GGCGTCTACTGATACAGAtcggtaa-----
i caePb3.Scfld02_254    I 150 C 0
s caeJap4.Scaffold54       85203 63 +   258924 AACAATAAG-TG-CAATGAGTCAC---CGGAGAAGAGAAGCGCCTACTGATACAGCTATGACGCGCGC
i caeJap4.Scaffold54    I 232 C 0

a score=-11808.000000
s ce10.chrX               505252 31 + 17718866 GTTGACAGA-----------CAAAAAAATTTGACAAAGAAG----T
s caeRem4.Crem_Contig24   335782  7 -  1162296 --------------------------------AAAATGT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528179 41 + 20921866 GTCCCCAACTGGCGCTTCCTCATTGGAggttgaaaataaag-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      130241 14 +   193288 -------------------------------gaaaaaaaagatag-
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       85266 19 +   258924 ---------------------GTTGATACATAATAAAGAT------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21034168 28 - 21540570 I

a score=136698.000000
s ce10.chrX               505283 277 + 17718866 AAAACTTACATTTTCATTAAAGCAGCAAATTGCTCTTCTGACGGTTTTGGAGCAG---GTTGATGTTGAAA------CATTGCGTTCAAGTATGCAGGGTTTGTCAATGGGTGCCCTAGCCATCGCTGCATTAATGCTGCGTTTGAAAATGGAATGGGAACTGGGATCTGCGGTAGGACAAATGGAAGTGAA---------------------------GGTGGTGGAGGGGACACTGAATTCTCTTTG---------------------GACAACATTTGAACGGTATCCTCCAAACTTCGCTTGGCTCGCTTACGAGATGGCA---TCTgaaaaa
s cb4.chrX              21034196 304 - 21540570 AAAACTTACATTTTCATCAGCGCGGTCAATTGTTCTTCAGACGGTTTCGAAGGTT---GATGCTGCTGGAACACATTCATTGCATTCAGGTAGACAGGATTTGCAAACGGCGAGCCCAACCATCGCTCCATCATTGCTGTTCCAGAAAATGGTATATTCATT------TGGGGTAACACAAATGGAAGTGGAAGTTGGGCATGAGAACGTGGGGTTGACGGTGGTGGAGGGGACATTGAGTTTTCTTTT---------------------GACAACATTTGTACAGTATCCTCCAAACTTCGCTTGGCTCGTTTACGTGATGGCA---Tctggaaaa
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig24   335789 300 -  1162296 -AAACTTACATTTTCATCAAAGCAGCCAAGTGTTCCTCGGACGATTTTGTAGGTTGTCGTTGCTGCTGGAACATGTTCATCGCATTCAAGTAGACAGGGTTGGTAAATGGAGATCCCATCCATCTTTGCATCATGACACTGTTGGAAAATGGTACAGACACT------TGTGGGAGCACGAATGGTAA-AGATGGTAGATGTGGGAC-----GGTTGTTGGCGGTGGAGGTGACATTGAGTTCTCTTTT---------------------GACAACATTTGTACAGTATCCTCCAAACTTCGCTTTGCTCTTTTCCGGGATggca---tctggaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528220 261 + 20921866 -aaaccTACATTTTCATCAGCGCCGCCAACTGTTCTTCGGAAGGTTTCGGAGGTT------------GGAACATGTTCAT---------GTAGACTGGATTAGCAAATGGAGAGCCCAGCCATCGATGCATTAC---TGTATGGGGGAATGGGACTG------------GCGGGATAACAAATGGAACTGGA-------------ATTCT--GTTAATCGGTGGTGGAGGGGACGTGGAGTTTTCTTTC---------------------GACAACATTTGTACAGTATCCTCCAAACTTCGCTTGGCTCGCTTACGGGATGAca---tctggaaga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      130255 292 +   193288 aaaaccCACATTTTCATAAGGTCTTCAATTTGTTCGCCAGATGGTTTTTGgggtt------------tgaaaatgttcattgtATTCAGGTAGGCCTGATTGGGGAACGGAGTGCTCAGATATTTCTCCATCACGGATGCATCTGGAAACGAAGCCGCAACA------TGAGGAAACATCAATGATAATGAAGGAT-GATACAATATCCT--AGGTGTTAGTAGCGGGGTGGGTACGGCACTTTCTTTC---------------------GACAGCATTTGCACAGTATCCTCTAAACTTCGTTTTGCTCGTTTTTGGGATGGca---tctaaaaaa
i caePb3.Scfld02_254    C 0 I 54
s caeJap4.Scaffold54       85285 314 +   258924 --AACTAACACTTTCATCAAAGCGGACATTTGCTCCTCATCTGGTTTTT---GTT---GGTGATGGTGCAGCATGTTCATCGCATGGATGTAGACTGGATTGGCGAACGGTGAGCCTAGCCATCGTTGCATCAG---GGAGTTTGAAAATGGTACTGGCACT------TGTGGAAGTACAAATGGGAG---AGTTCCGCCGGGGGACTGAGAGATGTGAGGTTGTGGAAGAG---CTGAATGCTTCTTTATGATCTTTCTCATGTCGTCGGAGAGCATCTGAACAGTGTCTTCTAGACTTCTCTTTGCTCGTTTTTGCGATGGAAGATGCTGAAAAG
i caeJap4.Scaffold54    C 0 C 0

a score=517.000000
s ce10.chrX               505560 2 + 17718866 aa
s cb4.chrX              21034500 1 - 21540570 -a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   336089 1 -  1162296 -a
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       85599 2 +   258924 AA
i caeJap4.Scaffold54    C 0 I 5998
e caePb3.Scfld02_254      130547 54 +   193288 I
e caeSp111.Scaffold630   5528481 0 + 20921866 C

a score=-1848.000000
s ce10.chrX               505562 147 + 17718866 tggaataaaataaaaataatatgatagcaaaaaatgaaaagaaaaatgtgaaatagaaagtatagaatCATTTCAAATTAT---GCTGTGTTTGCCCAGTTAAAAAAGTGGTAGAGAGTTATGGAAAGGCGGAGAAGAATGTGATCGAAG
s cb4.chrX              21034501  82 - 21540570 ----------------------------gtaaaat-ggGAGAATCAAATGAA---GGAAATGAAGAATGCGTTCACATAATA--GTTTtgtttgcacaaaaaaaat----------------agaaagaggA------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   336090 108 -  1162296 tggag-aaaatagaagaaa----atagcaaaaaaa-aggcgaataaagtgaa-tggaaaaataagaatgcGTTCACATAATAG-GTTCTGTTTGCATAGTGAAAgg----------------gggagggggg------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528481  91 + 20921866 -----------------------aaagaaaaaaat-aagcgA---AAATGGG----------CATATTGCATTTGcataatagttttttgtttgccTATCACAAAA----------------GAAAGGGAGGTG--GAAtgtgatc----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      130547  54 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=13918.000000
s ce10.chrX               505709 59 + 17718866 AAATGCGATTTGAAAAATAGGGGGAAATGTGTGGGAATCTCAAATACACTGAAATACAC-
s cb4.chrX              21034583 43 - 21540570 GAatgtgatctgaa----------aaatgtgtggGAATCTCAAATACATACA-------C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   336198 40 -  1162296 AAATgcgatctgaa----------aaatgtgtggGAATCTCAAATACAC----------C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528572 25 + 20921866 ----------tgaa----------aaatgtgtgGGAATctcaaac---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      130601 48 +   193288 AAATGCGTTCTGAA----------GAATGTGTGAGAATCTCAAATACATAAAACT-CAC-
i caePb3.Scfld02_254    I 54 I 853
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-9735.000000
s ce10.chrX               505768 400 + 17718866  
s cb4.chrX              21034626 474 - 21540570  
i cb4.chrX              C 0 I 244
s caeRem4.Crem_Contig24   336238 412 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528597 377 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      130649 853 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-732.000000
s ce10.chrX               506168 23 + 17718866 TTCGGAGATCTTGGATCTGAAAG
s caeRem4.Crem_Contig24   336650  5 -  1162296 --CTCGG----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5528974 23 + 20921866 CGctgagttttttgatctgaaag
i caeSp111.Scaffold630  C 0 I 12
e caePb3.Scfld02_254      130649 853 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035100 244 - 21540570 I

a score=-4514.000000
s ce10.chrX               506191 504 + 17718866 AAAAAAAAACTGTTCTGGACGTTTGGTATCTAGCCAGTATAATTTTTACTGCCTATCCCATTTGTGCACGATTTGTGAGCCTCTACAAGCTGAACGTGAATTGTATTGTGGCTTTGGTCAGATTTTTAAACTTCAAAAAACTTGAATTTTGTATTTCATTTAAtagtcttgcagcctctagtaaactttcaccctcattagtctaacagccctacCAGCCTCTAATTGTTTTGGAGCAAGCCGTTGCGAGACTGGGCGTGTTTTAGGGGACTCCTAGAAAACACTTTAAAATTTCAAAAGATTTAACGGAATTGATgaaaagtatgtaatactcagaattgaactatttgtgtccaaaatttactattttttcaaagcagtgtcgaaaattagtcttgcagcctcttgcgatttctattagttgtgaaccaatacggatcaatttagaaatagtattgcttgcagggctgatagaggaaatacggtaCCTGTATAATTTTTACG
s caeRem4.Crem_Contig24   336655 270 -  1162296 ----------TTTCCT-----------------------CAGCTTCGGCTTCCT-----------------TTTGTGTGACTTCA----------------TCCACTGTG---------------------TCCAAAAGA----------------TAATTCATAGTTT-----------GTAAAACTTC-----CGTTG--------------------------TGTTTTGTAAT---------CTGAACAAAATATGGTTTAAAaggat------gaaaatttgaaaatct-----gatatAACGGAGTctgagaaaatcagaaaataagtAAA--------ATTTGGGTCTAAGCT---------------AGCAGTGTGGAC------TCTAATAGCTCCCTTGG-----TGTTAG-------------------AAATTAGGAACA------CTTATATA------AAaggaaaaac----tcacaatcacTTTTATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      130649 853 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035100 244 - 21540570 I
e caeSp111.Scaffold630   5528997  12 + 20921866 I

a score=-1000.000000
s ce10.chrX               506695 168 + 17718866 -------TTTGGATAAAAATAACGTTTTAAACCTTATTTAGGACATGAAAGCACCTCCAAAGTTTCTCTTCAAAAGCTGAAATCTAACCTTTGAATCTCCTCGAGTAGTGAATCCCGAGCGTGCACGATTGCTGACTCTAACAATGTCATCTCCTGCTCTGAACACGTGTGGCTC------
s caeRem4.Crem_Contig24   336925 142 -  1162296 AAATACTTTTATGAAAGTCTAG-GCCATGAAA----------ATATACAA----------------------------AACAACTGACCTGCTTATCTCATCTATTAGCTCTCCAccaaatttctcgattttggTCTTCAAAGTGGTCGCCGTCTGCTTTGCACAAGAACAATTCTGTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5529009 151 + 20921866 -------tttgcaaaaaaataacgACTTGAAC----------AAAGATAA-----TTTTGAGCTTCACATCAAG----AAAAACGTACCTGTTAATCTCACTGACTAAATTCTCTCCCAACtgctctatttttcttttcagtggCACCACAAACTCCTCTGAACTGAAATCCTTCTC----
i caeSp111.Scaffold630  I 12 I 1
e caePb3.Scfld02_254      130649 853 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035100 244 - 21540570 I

a score=406.000000
s ce10.chrX               506863 142 + 17718866 CTCAAAGCATCAGAAACTGGATCCACCAACTGCTTTGAAAAAAATTCCGAGAGGGGTTGTGA---CTTTTCCATCGTTGTTGACCTCAAAAAAAAGAACAATCGTTGAGAAAAAAGGTGACA----GACTATAAAATTTCAATAACGAG
s caeRem4.Crem_Contig24   337067 114 -  1162296 CGGAGAGCTGTCACCACTGGATCTACCATGGTCTCCATGAAATACTCAATAAGGGGATGTGA---GTGCTCCATT--------CTGTAAGAAAATTGATACT----------GAAGtgtgaa----aattattgaaaat----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5529161 118 + 20921866 TTTAGAGCTGAGACCACAGGCTCTACCATCCTCTCCATGAAATAGTCAATGAGAGATTTTGATTGATGTTCCATC-----------TAGAATTA---A--------------AAAGTCTAgatccaaattttcaaagcttgagaaa---
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_254      131502 112 +   193288 CTCAATGTAGCGACGACCGGATCTACCATTCGTTTCATGAAGTAGTCAACTAG------TGTTTGGTGTTCCAtc-----------taaaaaaacgga--------------agaggtTGTATC--AGTTACCGTAG-TCGACGAG---
i caePb3.Scfld02_254    I 853 C 0
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035100 244 - 21540570 I

a score=74180.000000
s ce10.chrX               507005 284 + 17718866 GAAAATCAAAATa----agaatatggagtagaaaaagacg-atgaa--aaagggaagcag----aaacgggggaggaggg-----------gagagggcaaaagtaggcgtgtaaatgataac--tgtgag--------gaggagaaggaaataggaggaggacgaaaaagaagACGACGACCGTTTC-CTTTTCTCTCGCCCCCCCCCCCCCTGTCAT----------------TTGTCCACACACACACACACTCTTGAGGAGTTACAACAAGAGTGAT----TTTGTACAATCTGTTCTGATAAGGATCTGCGAAATCGCGGTTGAGATAT-------------------------------TCC---
s cb4.chrX              21035344 312 - 21540570 GGAAGTTGACACA----AAATTATGAACAATTAGGAAGATACGGAGTTGAAATTGAACAGTGTTAAA-TGAGAAGGAGGA-----------GTGAGGGCAAAAGTAGGCGTGTAAATGATAAC--TgtgagaagaaggagagaagaA-------AGAGGAGGA---------------CGACCGtttctctccctctcctttttctccccatttttcct-ttcttccgtcttattttctcAAC--------ACATG------GAGTTACAACA--AGTGAT--TGTGTGTACAATATGTGTAGATAAGGATCTGCGAAATCGCGGTAgagatatatatatatatatatatatatatatatatatatattcc
i cb4.chrX              I 244 C 0
s caeRem4.Crem_Contig24   337181 280 -  1162296 gaaaataaatccG----AATATTGGAGTA-----Gaagac-cgaaa--aaaattgaagaa----aaa-gaaggaggaggaagaggaggtgGGAGAGGGCAAAAGTAGGCGTGTAAATGATAAC--Tgtgag--------gagaagaa-------agaagagga---------------cgaccgtttc-cttcttcttctccttctactccttttccctattcttccgtcttattttctccACACACACATACATT------GAGTTACAACA--AGTGAT--TGTGTGTACAATCTGTGTTGATAAGGATCTGCGAAATCGCGGTCGAGATAT-------------------------------TCCTCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5529279 268 + 20921866 aaaaactgaaaag----gaTAGTTGAAAAGCggggggggA-ATACG--GACTAGGAGTGG----AAA-CGAGGAGTAGGA-------------GAGGGCAAAAGTAGGCGTGTAAATGATAACTGTgtgag--------gaggagaaga-----agaggagga------------cgGCGACCGtttc-cccccttttctctctctcgtccccttccaa----ttctctctcattttctccacAC------ACATT------GAGTTACAACT--AGTGATTGTGTGTGTAGAATCTGCGTTGATAAGGATCTGCGAAATCGCGGTCTCGACAT-------------------------------ATT---
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_254      131614 263 +   193288 AACAATTGGAAAATAACGAAAATTAAATTATGAAGTGGAT-GCGAC--AAAtgagaggag----gaa-aaagaaggggaa-------------gaggGCAAAAGTAGGCGTGTAAGTGATAAC--tgtgag--------gagaagaagg-----aaagtaGGA----------GGCAACGAccgttt----ctcttttctctccgtcttttacttccaa----tttcttcttattttctccaCAC----------T------GAGTTACAATA--AGTGAT--TGTGCGTACAATTTGTATTGATAAAGATCTGCGAAATCGCGGACAATAAAT-------------------------------TTC---
i caePb3.Scfld02_254    C 0 I 3965
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=17218.000000
s ce10.chrX               507289 47 + 17718866 TCCT----CGTCAATTTAT-----GATTGAGATACAAAAAGGTGTTACGGTTCTCG
s cb4.chrX              21035656 49 - 21540570 tCCCACTTTGTCAATTTAT-----GA--GAGATACAAAAAGGTGTTACGGTTTTCG
i cb4.chrX              C 0 I 2825
s caeRem4.Crem_Contig24   337461 50 -  1162296 TCCC----CGTCAATTTATTATGAGA--GAGATGCAAAAAGGTGTTACGGTTTTCG
i caeRem4.Crem_Contig24 C 0 I 2838
s caeSp111.Scaffold630   5529550 45 + 20921866 CCCT----CGTCAATTTAT-----GA--AACATACATAAAGGTGTTACGGTTTTCG
i caeSp111.Scaffold630  I 3 I 3000
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=0.000000
s ce10.chrX               507336 4488 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035705 2825 - 21540570 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I
e caeRem4.Crem_Contig24   337511 2838 -  1162296 I

a score=238.000000
s ce10.chrX               511824 101 + 17718866 TGGGTTCTGGTTGCTCAATGACCTCGAGTTTGATAAC------TTCTTCTT-----TATTCTCTACAACTTTTGTCGGCGGAGTTGGC-ACATCTGCAGGTT----------------------TCAAAGTCCT-----T
s caeRem4.Crem_Contig24   340349 136 -  1162296 TGGTTTTTGATCGTGCAGAATCATGGCGATTGATGGTCCGGcgttcttcttgtttttgttctttttggcttttttcgGC----TTGACCACCTCTGCTGGTTGCTCGACGATGACTACGACCGGTTGTGGTGCTGGTTGT
i caeRem4.Crem_Contig24 I 2838 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21035705 2825 - 21540570 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I

a score=10629.000000
s ce10.chrX               511925 68 + 17718866 AGTTTTGCAGCTTTTTTACTCGAAACCTTTTGAAATCCGTCCTCATCAATTTCAATTACCTCTCTGAA
s cb4.chrX              21038530 68 - 21540570 AGTCTGGCagctttcttttttgttaccACTTGAAATCCGTCTTCATCAACGATAATCGGCTCTCTGAA
i cb4.chrX              I 2825 I 438
s caeRem4.Crem_Contig24   340485 68 -  1162296 GGTCTTGCAGCTTTCTTTCCAGTGACCAATTGGAATCCGTCCTCATCAATGATAACTTCTTCTCTGTA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I

a score=491.000000
s ce10.chrX               511993 18 + 17718866 AAAAAGGAAAAATTACAC
s caeRem4.Crem_Contig24   340553 18 -  1162296 AAACAATAATCATTAAAC
i caeRem4.Crem_Contig24 C 0 I 86
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21038598 438 - 21540570 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I

a score=0.000000
s ce10.chrX               512011 536 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21038598 438 - 21540570 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I
e caeRem4.Crem_Contig24   340571  86 -  1162296 I

a score=2675.000000
s ce10.chrX               512547 462 + 17718866 CAAACTTACTTCTTTTTTGGAATCTTTGCAACTATTTGGGCAAGTTTTGTCATTTTGTACATATTACATTTATACTTCGATTTTCTGTTCTTCTTTCGACCAC--TTCTTGCTTTTTCTTTTGTCTCCAACTTCATGACTTCCACATCCTTCTGCATTCCGACTAATAGAACCGGTCCACCAAATCCAAAATCAGTAATTGCATCAAACTGGTAGAATTTCGACGGGACTGGCTTTATTTCGTGATCTGGCGGGCAAGATTTCTGTACAACCATTTTTCTGTTGAGCTGTTGCGCTTTAAAGTGAGCCTCTTTTAAAATACGCTGTC-GTTG----------TTTTTGTGAAATTCTGCTGCGAACACCAGAACGATTGAT--------TGGCGAACTATT-----GGCACTGATTG-TTTCCG---CCGATGAGTCATATCCAGAAGT-TGAATAGTTTGAAGAGTCTTCTTCGTTTTGTTCATTTGTAAAA
s caeRem4.Crem_Contig24   340657 444 -  1162296 caaactcactttttttttggtggcATTGGAGGT-TTTGGGC--------TCATTCTTCTGCGATTG--TTTCCACTGCGACGTT------TACCAGCAACTAcatttctcgcttttt---tcacCACACTTTTTACAGCCTGTACAGTTTTCTGCATTCCAA-TAACAAACTC--TCCAGTGAAC------TCATCAAGTGCATCCAGTTTATAGAACTTGGATGGTCCTGTCTTGATTTCATGATCCTCTGGGCAATCAATCAAGGTGGCTTGACTCTGGCGGAGGagttctttctt--------cttttcttgattCACCTTGTCTGTTACCTTGCGAACTTTTTGAGGGGTTCTG--GCGAATACGCGAACTATTGGACGAGCGTATGGAGAATTGTTCTTGGAATTTTGATTGGTTTCTGTTTCTCCTGTTTCATATCCCGATGTGTTAATTGGTGGAAAGTTCTCGATAG-------CAGTTG---GG
i caeRem4.Crem_Contig24 I 86 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21038598 438 - 21540570 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I

a score=329.000000
s ce10.chrX               513009 2 + 17718866 GT
s cb4.chrX              21039036 2 - 21540570 GT
i cb4.chrX              I 438 C 0
s caeRem4.Crem_Contig24   341101 2 -  1162296 GC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5529595 3000 + 20921866 I

a score=18065.000000
s ce10.chrX               513011 136 + 17718866 TCCGATACTCGGAGTGGTAAAGTTGAACCATTCCGCACCTTTTTTAAAGTACTGTGCAACAACTCCAGCGTAAGTTGTTACAAAGCAACAGTTGATCCATGGATTGTTCAAGAAATT---TCCTTC---CATCTGGCTGAAA
s cb4.chrX              21039038 129 - 21540570 TCCGATAGTGGGGGTCACAAATGTAAACCATTTTgccccttttttgaaaacagagcTGAGGACTCCGGCATATGTTGTTATGAAGCAGCAATTGATCATTCGGTTGTTGAGAAAACT---CTCCTCATGCAT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   341103 142 -  1162296 TTCAATGGCTGGAGTGACAAAAGTGAACCAACACGCTCCTTTTTTGACTGCGGCAGCGAGAATTGCCGCATAGGTAGTAATAAAGCAGCAATTGATGTAGGCGTTGTTGAGCGGGGTGGCTCCTTTGTTCATATCGCTGAAA
i caeRem4.Crem_Contig24 C 0 I 264
s caeSp111.Scaffold630   5532595 133 + 20921866 TCCTATATTTGGATTCACAAA---GTACCAGGAAGCGGGGTTTTTGAAAGCCGAGCTCAAAACTTCAGCATAAGTGGTGAAAAAGCAGCAGTTGACATACGCGTTGTTCAAGAA------GCCGTTTGGCATTTGGCTGAAa
i caeSp111.Scaffold630  I 3000 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-1308.000000
s ce10.chrX               513147 22 + 17718866 TGAGCCCGTTTTAACAAA--AATT------
s cb4.chrX              21039167 24 - 21540570 ------CGTGTCAATTATAGGACTGAAATA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5532728 21 + 20921866 -gaaatctttttgataAT--GATT------
i caeSp111.Scaffold630  C 0 I 349
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeRem4.Crem_Contig24   341245 264 -  1162296 I

a score=1013.000000
s ce10.chrX               513169 28 + 17718866 ATGTTGATTTCTAATTAAAAAGAAGTAA
s cb4.chrX              21039191 28 - 21540570 ATTTGCATTTGAAGTTAGGAAAAAGTAA
i cb4.chrX              C 0 I 300
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5532749 349 + 20921866 I
e caeRem4.Crem_Contig24   341245 264 -  1162296 I

a score=0.000000
s ce10.chrX               513197 1052 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039219  300 - 21540570 I
e caeSp111.Scaffold630   5532749  349 + 20921866 I
e caeRem4.Crem_Contig24   341245  264 -  1162296 I

a score=362.000000
s ce10.chrX               514249 26 + 17718866 GACTGGCACCAAGGCCGCGCCCACCG
s cb4.chrX              21039519 24 - 21540570 GACTGGTACGCAAAGCTTGTCCA--G
i cb4.chrX              I 300 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5532749 349 + 20921866 I
e caeRem4.Crem_Contig24   341245 264 -  1162296 I

a score=657.000000
s ce10.chrX               514275 14 + 17718866 GATACAATCAAAA----------A
s cb4.chrX              21039543 19 - 21540570 GATGtgataaaaaaggaa-----a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   341509 24 -  1162296 GATGTAATCGGAAAAGGAGAGCGA
i caeRem4.Crem_Contig24 I 264 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5532749 349 + 20921866 I

a score=2779.000000
s ce10.chrX               514289 124 + 17718866 GATGGATTACACTTGGATTATCAC--CGGATATCACATAT--ATCACATTAAGCAACCGAGC------ATTTTTT---------CAAAGCACTTGGTAT--CAAGATTAACTTTGAGAATTTTTTTTCATCTAATATGAAGAGAA-----
s cb4.chrX              21039562 129 - 21540570 tatgAATTACACTCGGATTATTAC--CGGATATCTTAGATATAT--------GATGTCACTc------gtctttctcttcttttctaaGCGCTAGGCGCGTTAGgattaattttttgagcatCTT----TCTAATAAGGTCCTAATGGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   341533 127 -  1162296 CATGGATTACACTCGGATTATCAC--CGGATATCTCGGATTTATT------AGAAGTCACGCAAATAAGTTTTTC----CTCAGATAATCACTTGGTGC--CAGGATTAACTTTTTTCCGCTTTG----CCTAATAAGAT-----TGGAA
i caeRem4.Crem_Contig24 C 0 I 8753
s caeSp111.Scaffold630   5533098 107 + 20921866 gatgGATAA----CGGATTATCCTGGCGGATATCACGAAT-CATC----CGAGAAGTCAcacaat---atttttt-----------aat-----agtgC--CTGGATTAGATTTGTGtgaatctgtttttcttctaa-------------
i caeSp111.Scaffold630  I 349 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=2802.000000
s ce10.chrX               514413 73 + 17718866 ATGATCTGGGTGTGTGTGTGTATAAAAATTTAAGAATGTTTACAGCCGGAAACATACACTTTATCGGCATCCA
s cb4.chrX              21039691 39 - 21540570 ATGATCTG----------------------------------GCGCCGGAAACGTACACACTACCCCCATCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5533205 36 + 20921866 atgGC-------------------------------------ACGCCGGAAACATACTCTTTATCAGCATTCA
i caeSp111.Scaffold630  C 0 I 35902
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeRem4.Crem_Contig24   341660 8753 -  1162296 I

a score=980.000000
s ce10.chrX               514486 105 + 17718866 ---------CTGCAGGCTTTGCTTCCAGGTTTGAAGATTCCAGAAAGGAGTGG------------TTCTGAAAAAAAAACTACTAAGATATTTGAAAATTATCTTAATCCAATTAAAAAGAGGGTG
s cb4.chrX              21039730 111 - 21540570 TGATGTTTTCCGAGAGTTTTCCTGCT---TCTGATGcctcaaaatcggaatagACGATCcagataatctgaaaaaaaaactttgaagtaatcaggaaa------------aattaagaaaagtgcg
i cb4.chrX              C 0 I 4262
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630   5533241 35902 + 20921866 I
e caeRem4.Crem_Contig24   341660 8753 -  1162296 I

a score=0.000000
s ce10.chrX               514591 11473 + 17718866  
e caePb3.Scfld02_254      131877  3965 +   193288 I
e caeJap4.Scaffold54       85601  5998 +   258924 I
e cb4.chrX              21039841  4262 - 21540570 I
e caeSp111.Scaffold630   5533241 35902 + 20921866 I
e caeRem4.Crem_Contig24   341660  8753 -  1162296 I

a score=603.000000
s ce10.chrX               526064 9 + 17718866 AAATCATAT
s caeRem4.Crem_Contig24   350413 9 -  1162296 AAATGATAT
i caeRem4.Crem_Contig24 I 8753 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I
e caeSp111.Scaffold630   5533241 35902 + 20921866 I

a score=26316.000000
s ce10.chrX               526073 197 + 17718866 TTAATCTCTCTTCG---ATTTGCCCTTCTTTTCCTCCACATGCCCGAAACAACTGAACTTGTACCACCCAAAAATGGTAGGTATCACAAGAGAAATGCTAAGCCAAAATACTGGAATAATCACATCTAAATTGTAATAAGTCCAAGTTGTTTGACCACGGCTTTCGAACTTAATTTCGTCGAGTCCGTGATTTTTGATTG
s caeRem4.Crem_Contig24   350422 199 -  1162296 -CATTCTTTCTTCGACttcctcttgtttttctcttcaatatgCCCGAAACAACTGAATTTGTACCACCCGAAAATAGTGGGGATGATGAAACTGAGAATAATCCACAGAATCGGAAGAAGCACATCTAGATTGTAATATGACCACGTGCATTGCTCTCTGCTCTCAAATTTGAGTTCATCAAGTCCATTATTCTTGATTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15378129 197 - 20921866 TCACTCGTTCTTCa---tcttatttcttttttcttcaatgtgTCCAAAACAACTGAATTTGTACCAGCCGATAATTGTAGGGATTATGAAGCTGAGAACGATCCAAAGAATCGGAAGAAGAACGTCGAGGTTGTAGTAGGTCCATGTGGTGTGGGAGCGACTTTCGAACTTGATCTCGTCAAGAccatgatttttgatag
i caeSp111.Scaffold630  T 16556 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I

a score=-887.000000
s ce10.chrX               526270 140 + 17718866 CCTGCAAAAAGTCGTATCATTATCCCACGCTATTTCCTTTCTAAAAATAAATTTAATAACAAGTTTGCTTAAAGTTTCTCAAAATGTGAACAATTATAACGTGGTGGGTTTCGAGCTTTGGTTTCCCCCAACAATGTTTT
s caeSp111.Scaffold630  15378326  69 - 20921866 cctgagaaga----------------------------------------atttgagaataa-------------ttttcaaaa--------atca-aaagcagttgatct-----tctgattttccGCAA----GTTTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I
e caeRem4.Crem_Contig24   350621   0 -  1162296 C

a score=0.000000
s ce10.chrX               526410 102 + 17718866 TATTGATTGGTTATGAATACTATGCACCTACACAGATATTATCTACCCGCTAAAACCTGAAACTTTGACTTTGATTTTTTTGTTCAAACATTTTTTACAGAT
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I
e caeSp111.Scaffold630  15378395   0 - 20921866 C
e caeRem4.Crem_Contig24   350621   0 -  1162296 C

a score=373.000000
s ce10.chrX               526512 4 + 17718866 CTTA
s caeSp111.Scaffold630  15378395 4 - 20921866 CTTA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I
e caeRem4.Crem_Contig24   350621 0 -  1162296 C

a score=7283.000000
s ce10.chrX               526516 47 + 17718866 CCCATTCAGTAGTTTTAATCAGTAATTGAGAAGAACTGAGGGGTTTT
s caeRem4.Crem_Contig24   350621 47 -  1162296 CCCATTCCGTTGTTTTGACAAGAAGTTGAGAAGAAGTAAGAGGCTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15378399 47 - 20921866 CCCATTCCGTAGTTTTGACCAGCAGCTGTGACGCGCTAAGTGGCTTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21039841 4262 - 21540570 I

a score=80918.000000
s ce10.chrX               526563 389 + 17718866 GATTTGATAAGATCGCGTATTCTCTGAGCTTTCAAGGAGTACCTGAATC-------AATAATTT---TTATTCAAATACT-----AAACGCAA------AGGTAACATACTTCTTGTTGTGAATAATTTCAGAAATAGCCTTTTCAATTTCCTCGGGCTCCGTAAGCAGTTGTTTTTTGTGTCTTCGGATTCCCCAACCTTTTTTCTCAACTGCTCTGCTGTTTCT------AAATTTGAAAATGATTCATG-------TGGGGCAG---TATTTCGGAAACTTACAAATTCTGATCAAACATAAAAGGAATATTGATAAGTGGAACTCCAGCTCTCGCCGCTTCAACAATACTATTGTAGCCAGAATGAGTGATGAAGAGTTTGAGGCGAGGATGGTCTGGAAAATTAAG---CTATTATTTTTTTTT--
s cb4.chrX              21044103 396 - 21540570 GATTTGATGAGATCTCTTATTCTAATTGCTTTGTCtgagtatctgaaaa-------aattatgagacTTTTTCATATATT-----GGATGAATGGCGAAATG-AACTAACTTTTTATTGTGGATTATTTCGTTAATAGCCTCTTCAATTGCTTCTGGTTGCGAGAGCAATTGATTCTTAAGCCTGCGGATTCCCcatcattttttcttaataGCACGactgtttct------aaa----aaaatagcCTTTGTTT----GAAATGAGAACAGATCT--CTACTTACAAGTTCTGGTCAAACATGAATGGGATATTAATTAGTGGAATTCCAGCTCGTGCAGCTTCTACAATGCTGTTGTATCCAGAATGAGTAATGAATAACTTGAGACGGGGGTGATCTGAA---ACAGA---AACTTAGCTTTTTGTTC
i cb4.chrX              I 4262 C 0
s caeRem4.Crem_Contig24   350668 398 -  1162296 GATTTGATGAGATCTCTTATTCTATGCGCTTTCTCggtatatctgaaaat------ggttaTTCGA-TTTAAAGAGTATG-----AGACTAAT------CCA-AACTGACTGCTTGTTATGGATAATAAGGTTGATTGCATCCTCAATTGCTTCGGGCTCCGTAAGCAATTGTTTTTTGTGTCGGCGGATTCCCCACCCCTTCTTCTCAACTGCGCGACTGttcctgaaatcaaa----aaaatcggcttGA-------GAATTGAG---GGACCTGAAAACTCACAAGTTTTGGTCAAACATGAATGGGATATTGATGAGGGGGACTCCAGCCAGGGCGGCTTCAACAATACTGTTATATCCAGAATGTGTAATGAATAATTTGAGCCGTGggtggtctgaaaatatagaatgaGGTTaagtattttttc
i caeRem4.Crem_Contig24 C 0 I 327
s caeSp111.Scaffold630  15378446 394 - 20921866 GATTTGATAagatttctgattctctCTGCTTTCTCCTTATATCTGCAAATCGGCGGAGTAATCGGTAATAACCGGAAATTCAAGAAGACTGAT------AGA-AACTGACTGTTTATTATGAATGATTTGATGAATTGCCTCCTCGATTGCTTCCGGCTCCGTCACCAATTGTTTCTTGTGACGACGGATTCCCCAGCCTTTCTTTTCCACTGCGCGGctgtttct-------------aaaatttttttagatcaAGGGAAAGGAA---AAGCTC--TAACTAACAAATTTTGGTCAAACATGAAAGGGATATTAATAAGTGGGACACCGGCTCTGGCTGCTTCAACAATGCTGTTGTAACCGGAATGGGTAATGAATAATTGGAGACGTGGGTGATCTGGA-------A---AAAGTaatgatattt--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=22935.000000
s ce10.chrX               526952  93 + 17718866 CGAATATAA----------ACATACGGAGAATTGCCGGTTGTGGTAGCCAATCAGACACAAAAGCGTTGGAAACTGATTTAGCATATTCTCGGGTGCTCTGAA
s cb4.chrX              21044499  95 - 21540570 TGATTTTCA--------CTGCTTACGAAGCATAGAAGTTTGCGGTAGCCAATCAGATACAAATGCATTCGAAACGTCCATTGCGTGCTGTCTCGTACTCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   351393  93 -  1162296 cgaaTTTTA----------ACTTACGAAGAATAGCAGGTTGTGGAAGCCAATCCGATACGAACGCATTTGAAACAGTCTTGGCATATTCTCGtgttttctgaa
i caeRem4.Crem_Contig24 I 327 I 35
s caeSp111.Scaffold630  15378840 103 - 20921866 caaaaagtaggAGCAGCCAACTTACGAAGAATCGCTGGTTGTGGAAGCCAATCCGAAACAAATGCATTAGGAACAGATTTCGCATAGCTCCGagtgttctgaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-770.000000
s ce10.chrX               527045 2 + 17718866 AA-
s cb4.chrX              21044594 2 - 21540570 TA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15378943 2 - 20921866 -aa
i caeSp111.Scaffold630  C 0 I 25
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeRem4.Crem_Contig24   351486 35 -  1162296 I

a score=91.000000
s ce10.chrX               527047 1 + 17718866 A
s cb4.chrX              21044596 1 - 21540570 A
i cb4.chrX              C 0 I 30
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15378945 25 - 20921866 I
e caeRem4.Crem_Contig24   351486 35 -  1162296 I

a score=0.000000
s ce10.chrX               527048 778 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21044597  30 - 21540570 I
e caeSp111.Scaffold630  15378945  25 - 20921866 I
e caeRem4.Crem_Contig24   351486  35 -  1162296 I

a score=59.000000
s ce10.chrX               527826 3 + 17718866 AAT
s caeRem4.Crem_Contig24   351521 3 -  1162296 aaa
i caeRem4.Crem_Contig24 I 35 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21044597 30 - 21540570 I
e caeSp111.Scaffold630  15378945 25 - 20921866 I

a score=-283.000000
s ce10.chrX               527829 3 + 17718866 AAA-
s caeRem4.Crem_Contig24   351524 3 -  1162296 -aac
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15378970 3 - 20921866 aaa-
i caeSp111.Scaffold630  I 25 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21044597 30 - 21540570 I

a score=128956.000000
s ce10.chrX               527832 579 + 17718866  
s cb4.chrX              21044627 794 - 21540570  
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig24   351527 577 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15378973 571 - 20921866  
i caeSp111.Scaffold630  C 0 I 40
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-1015.000000
s ce10.chrX               528411 2 + 17718866 GT------
s cb4.chrX              21045421 8 - 21540570 TTCAAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   352104 2 -  1162296 GT------
i caeRem4.Crem_Contig24 C 0 I 25
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15379544 40 - 20921866 I

a score=287.000000
s ce10.chrX               528413 37 + 17718866 TTTAGTTTTTTTTTGGtaatattattttattaaaaaa
s cb4.chrX              21045429 37 - 21540570 TATATGTATATTCCATTCAAACTATATTTTCGAGgaa
i cb4.chrX              C 0 I 4
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15379544 40 - 20921866 I
e caeRem4.Crem_Contig24   352106 25 -  1162296 I

a score=0.000000
s ce10.chrX               528450 1013 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21045466    4 - 21540570 I
e caeSp111.Scaffold630  15379544   40 - 20921866 I
e caeRem4.Crem_Contig24   352106   25 -  1162296 I

a score=583.000000
s ce10.chrX               529463 16 + 17718866 CCAGTTTCAACCACTC
s caeRem4.Crem_Contig24   352131 16 -  1162296 ccagtatTGGTGACTC
i caeRem4.Crem_Contig24 I 25 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21045466  4 - 21540570 I
e caeSp111.Scaffold630  15379544 40 - 20921866 I

a score=95835.000000
s ce10.chrX               529479 408 + 17718866  
s cb4.chrX              21045470 452 - 21540570  
i cb4.chrX              I 4 I 1495
s caeRem4.Crem_Contig24   352147 480 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold630  15379584 421 - 20921866  
i caeSp111.Scaffold630  I 40 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=17633.000000
s ce10.chrX               529887 374 + 17718866 GTTCACAGACTGTAATTTTA-------------------------------------TTGCTTTTATGCAGACT-------------------------------------TTTTTAAATGTAATACATCCTTTTTGAAAAGACTTATTATAATTGACTAAAGTGATTTTTTGACCTACCACATCATGACCAGCGCGGGCCAGTTCATCAGCAAGCCTTCCATTTGAAATTAGATGAGATTTACTTGTTGCAGGCGAGAATACTAAAATTTTATAAGAAAACGCTGCATTTACAAATGTTGCTAGTAATACAAATATCA---GCCGCATAGTTAAACGCTAA--TAACGCGTCAAGAATGCTGCAAATTAGTTTTTACACGTCTTATCAGTTCTACAAAATGATA-------------AGACAAAAGTGGCGACGAAA--AGAGCGG-CTGTTGATAAGATCACAATGT
s caeRem4.Crem_Contig24   352629 458 -  1162296 tgtttctgattgaaattttgaaatgagtaGGTACCGTATCCCCCATAATGAAACACTTTGTTTTAAATCGGATTACCCTGTTTACTACTATTTCCCAACCCTATTATTCTACCTTCCCATTAGCTAAATCCCCATT-AGAATTCCCATTATTCAC-ACCaaaaaaaTGTGACCACTTACCACATCGTGACCAGCTCTAGCGAGTTCATCGGCCAACCTTCCATTCGAAATCAAATGAGACTTGCTAGTAGCGGGGGAGAACACCAATATTTTATAAGAAAGTACTAAATTTACACATAATGCCAG------AAATATCA---GCCGCATAGTTATAGACTGACTCGACTGAACTAATGAATTGCTGGGTTGTGTGTGCGTCTCTTATCATTTGTTGGATGTGATAAGAacataaagaagaaaaagagtggCGACGAAAAGAGAAGGGACTACTGATAAAATGATGATAT
i caeRem4.Crem_Contig24 I 2 I 34
s caeSp111.Scaffold630  15380005 283 - 20921866 -------gttaacgcttttgaaa----------------------------------ttgatttaaa-------------------------------------------------------------------------------------------------------AACACATACCACATCATGTCCGGCCCTTGCCAACTCATCTGCTAGCCTCccatttgaaatcagatgaGATTTGCTAGTAGCCGGAGAAAATACTAGAATTTTATAAGAAAACACTAAATTAGTACACAGTGCTAG------AAATAACAGCGGCCGCATAGTTATAGA------AAACTGAACTAA--------TGGGTTGCATGTACATCTTATCGAAAATATT-GATATGATAAGAGT--------GGAAAAAAGTGGCGACGAAA--AGAAAGGACTActgataa-----------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21045922 1495 - 21540570 I

a score=-232.000000
s ce10.chrX               530261 13 + 17718866 CATTTTTGTGAAC
s caeSp111.Scaffold630  15380288  3 - 20921866 ----------aaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21045922 1495 - 21540570 I
e caeRem4.Crem_Contig24   353087 34 -  1162296 I

a score=-34685.000000
s ce10.chrX               530274 303 + 17718866  
s caeRem4.Crem_Contig24   353121 631 -  1162296  
i caeRem4.Crem_Contig24 I 34 I 25
s caeSp111.Scaffold630  15380291 128 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21045922 1495 - 21540570 I

a score=31955.000000
s ce10.chrX               530577 409 + 17718866 ATAATAATTATGATGAAA---GCATGGTATTAAATATTATTTA---------------ACGACGA---TTTACT-TTCCA--------------TATCCACATCCACAGCATCCTC---CACATGGAACTGGAGACACTGCAGCTACAGTAGCACATCCACACCCACAACCGCATCCATAATAT---CTCTTGGCGCGAATCATAACTTC---AGACTGGCCTTCCAGGGCTATGTCGGTTGGAAGTTCTTCACCATTCACAGCTAATGCAAAATTTGAAG---------AATCTTGAATTGGACCCGATTGTTCCAAACTC-TAAAATTAAACATTATTACATTTTACCAAGCTTTTTT--------TTGTTTTCAACCTTATCTATAATTTCTGAATTAGCAATAGAAAATACGAGGATAGCAGCGAAAAGAACAACGCGGAGCATTTTTG---------AAGGCAAACTGAGAGAATA-
s cb4.chrX              21047417 401 - 21540570 attgaaaaaacaaaaaattaaataggTTATTAA-------TAA---------------ACAATAGACAATTATT-TTCCA--------------TATCCGCATCCACAACATCCAG---CACATGGAGCTGCAGAAACTATTGCAACTTTAGCGCATCCACAGCCGCAACCGCATCCGTAATAT---CTCTCGGCACGAACAATCAAATCCGACGATTGTCCTTCTTGCACTAAATCCGCAGATAATCCTCTCTCAATTGCCGCTGCTTTCATGTTGAAGA---------GTTGTtgaatt---tccacattttccgaattcttgaa--------ttcgtaacttttcgaaaaattttta-cacAATACTTTTCTC-AccttattcaaaatttcagaatggacagcgacaatgaaaaaaatggaagcaaCGAAACTAGCACGGATC----------------ATATTGGTTTTGAGAAATGA
i cb4.chrX              I 1495 I 41
s caeRem4.Crem_Contig24   353777 429 -  1162296 att-caaatttgataaAT---ACATGTTATAAA-------TAATACACAGGAAAATGCATGATAACTCATTATCATTCCGATCGAATAAATCATTATCCACATCCACAACATCCATAACCGCATGGGACAGGTGTGACGGCGGCTACTGTAGCACATCCACATCCACACCCATATCCGCAATATTGGCGCTTGGCACGAATAACGACATCGGAAGATTGTCCTTCCACGGCCAAATCGGTCCGTAGATCTTGGTCCTTGACAGCCAGGGCGAAATTAGCAG---------TTTCTTGAATC---CCGGATTGCTCCGAATTC-TGAA--------TTTAGAAGGTTCGATGGTTTccttatctgaaaatcgagcTC-ACCTTGTCATAAATTTCCGAGTTCACAGCAATGGCaaagaaaaccacaaaaagaGCAGTAGCACGAATC----------------ATGGCAGATT----ATGTTG
i caeRem4.Crem_Contig24 I 25 I 8
s caeSp111.Scaffold630  15380419 389 - 20921866 -----aaaataaataaat--aaaaaatgagaga-------caA---------------GAGAAAG---ATTATT-TTCCA--------------TATCCGCAACCACAACATCCAT---AGCATGGAGCAACTGAGACCGCAGCCACAGTAGCACATCCACATCCGCAGCCACAACCGTAATAT---CTCTTAGCGCGAACCACAATGTCAGAAGATTGGCCTTCTTGGATGAGGTC---------------TTCGTTGATAGCAATAGCGAAGTTAGAAGAATCGGGAATTCCTTGAGTT---TCAGACACCtccgaattc-tgaaat------tttgttccGTTCAATAAGATCTAAG-----------AGCTT-ACCTTCTCAATGACTTCCGATCTAATAATTACAACCATCAAGATGGAAATGAGAGCCAAAGCGCGAATCATCTTTTCGAATACGAATAGAAACCTTGGAATG---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-2188.000000
s ce10.chrX               530986 46 + 17718866 AAAAAATAGCT--TGTTCAAAGTGTGACTGACATCAATGTCTCTTTGC
s caeRem4.Crem_Contig24   354214 44 -  1162296 ----GAAAACTTATGTCCAGAGTATGTCTgccagttttggaaattttt
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold630  15380808 27 - 20921866 ---------CTGATAT------------GACTCGTTCTGTTAACTTGC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047818 41 - 21540570 I

a score=19034.000000
s ce10.chrX               531032 62 + 17718866 -TTTTTATACTT-TTCTGCGCGGTAGACAATATGATAATATTGTTTGAACATGTGTTTTTGGGA
s cb4.chrX              21047859 62 - 21540570 -TTTTAATACCA-TTCTACATCGTAGACAATATAATAATGATGTTTGAAcacgtgttttttcaa
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig24   354258 63 -  1162296 -cttttatactGCTTCCATGCACTAGACAATATGATAATTATGTTTGAACATGTGTTTTTAGGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15380835 64 - 20921866 TCTTTTATATACCTTTGATGCAGTAGACAATATGCTAATAGTGTTTGAACATGTGTTTTTGTGA
i caeSp111.Scaffold630  C 0 I 374
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=-435.000000
s ce10.chrX               531094 38 + 17718866 AGCTTGATCGGC--TAATTTATTCCCGAGAC--TAACAAACA
s cb4.chrX              21047921 40 - 21540570 aagttttttctcaataatttATA-CTGACAC-TGAACAAACA
i cb4.chrX              C 0 I 12078
s caeRem4.Crem_Contig24   354321 33 -  1162296 AGATGT--------TAATATATG-CAGGGACAAGTGCAAACA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15380899 374 - 20921866 I

a score=485.000000
s ce10.chrX               531132 56 + 17718866 TTGAATTTTTGGTGAGACCTT--CATACACCAGCATCGAG----TACTGAATTTTCACGTCA
s caeRem4.Crem_Contig24   354354 57 -  1162296 AAGAA-----AGTGAGAATTTTGCGTAGATCAGGATCAGGAATTTGCTGAGCGTTTATGTTA
i caeRem4.Crem_Contig24 C 0 I 213
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeSp111.Scaffold630  15380899 374 - 20921866 I

a score=0.000000
s ce10.chrX               531188 712 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeSp111.Scaffold630  15380899 374 - 20921866 I
e caeRem4.Crem_Contig24   354411 213 -  1162296 I

a score=663.000000
s ce10.chrX               531900 140 + 17718866 ATTAATTTAAAGCAAAATGCCCAAAAGGTATAAAATTTCAAAAAACAATGAAAAACGGGGTAAAGCAAGGGGTGAACCCATGAAAGTACATGTAAACGGGA-AAGTGAATGAC--------TTTAA----AAGTCGGCTGAAATGCTGATAAA
s caeRem4.Crem_Contig24   354624 137 -  1162296 ATTTATTGAAATAGGAATACcttaa-----------ttcagaaaaaaatcaaaaa-----tacaacATTGATAAAGCCTTTTGTATTACCCATTAATACAATAAGTTCATGACaaaaaagatttaatcggaagcggaaagaatcggtgatgaa
i caeRem4.Crem_Contig24 I 213 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeSp111.Scaffold630  15380899 374 - 20921866 I

a score=-7765.000000
s ce10.chrX               532040 336 + 17718866 -AAACCAATGACAAAACGGAA---AAAGGGCCCATAAGAGTTTCAATTGAAAAT-------CCTAGA------------------------------------------AAAAGGGTAACATTTTAAATTGAAAAATTAGAATGAA-----CGTAGAGGTTTATGTTTTCAAAACGTTGGAAT-------------------------------CGGGAAAATAGGGTTCAATAAACGGGAGAAGTGGCAAA-------AGGGGAACCTATTG----------GTCAAAAAGTCCAGTGAATACTTGGCAT--GGCAATA-----GAAAATG--ATATT---GA---AATCCATTC---TTGTTGGATGACTAGTTGTTGCACAGGGATGGGTCCGTGAAGTCAATATCAGTCCAGTAAAGTGGGACAGGGTGTCTGAA-------AATTACAATCGGTT-TATGTTT
s caeRem4.Crem_Contig24   354761 440 -  1162296 aaaacccagaaa----agaaaatgaggaggCCCATAAGAGTTTCCATTGAAAATCCTATAATCCGAATACTGATTACATAACACTGAATAATATGCTATCaaaaacagtaaatcagtatagaaaaacaataaaa-atgaaaagaaa-----cagGGAA---CAGGTAACAGACTAATGGGAAATCAAGCAAGAAGTGCAAATCAGTACATGACGATGGAATGACAAGTTCA---AACACAACAAATTAAAAGTG-----ACAAAAAGCTATTGCAACACGGGAGTGGAAAATTGCAAGAA-----TGAAATCAAGCGCTAACAGTGAAAAGGAGATATGTGAGATCCAATCAATGACAGTCGCTGGAGAAGAAATTCATA-GGAGAGAAGAGGCAGTGTAGTCGATATCGTCCCAGTAGAGTGGAATAGCTGGTCTGAAATTGAG-AGTTTGAAatgatttcatgttt
i caeRem4.Crem_Contig24 C 0 I 810
s caeSp111.Scaffold630  15381273 334 - 20921866 -AAACCCATGAC----CGaaa---aaaaTACCCATA-------CAATTGTAAAT-------TTCTAA------------------------------------------AAGGCAGGATGGATAGATGTTGAAACATCGGGAGGCATTGTTCGAGGAA---CATGTAGT--ATCGGTGGGCAA-------------------------------AGAGGATGACAAAAGCAGTGAACATGGTAAAACGAGAatattattatgaaaa---aatgtctagcgtatttttaaaattgaatggaGACCTTCAAATCGAGCTTTG-----GAAGACGTATTATTGGAGA---AGTCGATTG-AGCTCTTAGAGAAGAGCTTC--------------GGCGGTGAAGTCGACAACTGGCCAATAAATTGGAGTTGGATGCCTGGAAAAAAGTAACTGTAGAAGGTT--------
i caeSp111.Scaffold630  I 374 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I

a score=366.000000
s ce10.chrX               532376 10 + 17718866 CGGACAACTT
s caeSp111.Scaffold630  15381607 10 - 20921866 Cgggagattt
i caeSp111.Scaffold630  C 0 I 41
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeRem4.Crem_Contig24   355201 810 -  1162296 I

a score=0.000000
s ce10.chrX               532386 513 + 17718866  
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeSp111.Scaffold630  15381617  41 - 20921866 I
e caeRem4.Crem_Contig24   355201 810 -  1162296 I

a score=27.000000
s ce10.chrX               532899 7 + 17718866 tactcca
s caeRem4.Crem_Contig24   356011 7 -  1162296 TGTTTTg
i caeRem4.Crem_Contig24 I 810 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21047961 12078 - 21540570 I
e caeSp111.Scaffold630  15381617 41 - 20921866 I

a score=-63.000000
s ce10.chrX               532906 10 + 17718866 -cctttaaTAC
s cb4.chrX              21060039 10 - 21540570 -CCTTGAACTT
i cb4.chrX              I 12078 C 0
s caeRem4.Crem_Contig24   356018  8 -  1162296 cctttaaa---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      131877 3965 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15381617 41 - 20921866 I

a score=-261.000000
s ce10.chrX               532916 4 + 17718866 AAAA-
s cb4.chrX              21060049 4 - 21540570 TGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   356026 3 -  1162296 -aaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      135842 4 +   193288 -aaat
i caePb3.Scfld02_254    I 3965 C 0
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15381617 41 - 20921866 I

a score=27394.000000
s ce10.chrX               532920 96 + 17718866 ACTCACTCAAAGGTCGGGAACTTCG--TCTGTTTG--GTTTGCTCCGGGAAGCACTTGAAGGTGCTGATCATCTCAGCATCCGGAATGAATGGTGGCACA
s cb4.chrX              21060053 93 - 21540570 CCTTACATGAACGTTGGCCAATTGG-----AGTTG--GTTGGACACGGCAAACACTCGAATGTGCGGATTTGCTCAGCATTTGGCACAAATGGCGGAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   356029 99 -  1162296 acttactcaAACGTCGGAAACTTGT-TCGCAGCTAATGCCGAGTCTGGGAAGCATTTGAAGGTGTTGATAGTCTCCTCGTCTGGCACAAACGGTGGTGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15381658 96 - 20921866 ACTTACTCGAATGTTGGGAACGAGG--CGTTCTTG--GCCGACTCCGGGAAACACTTGAAGTTCTTGATCATCTCTTGATTTGGCACAAATGGCGGAACC
i caeSp111.Scaffold630  I 41 C 0
s caePb3.Scfld02_254      135846 96 +   193288 aCTTACTCAAAACTTGGGAATTGTGATCCTTTTTG--AT--GCTCTggaaaacattcgaaattgGTGATCATCTCATTGCTTGGGATGAATGGTGGAACA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       85601 5998 +   258924 I

a score=3267.000000
s ce10.chrX               533016 8 + 17718866 AGCTGGAA
s cb4.chrX              21060146 8 - 21540570 AGCTAAAA
i cb4.chrX              C 0 I 309
s caeRem4.Crem_Contig24   356128 8 -  1162296 AGCTGAAA
i caeRem4.Crem_Contig24 C 0 I 557
s caePb3.Scfld02_254      135942 8 +   193288 AGCTGCAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       85601 5998 +   258924 I
e caeSp111.Scaffold630  15381754 0 - 20921866 C

a score=252.000000
s ce10.chrX               533024 16 + 17718866 GTTTTGTAATTTTAGA
s caePb3.Scfld02_254      135950 16 +   193288 AATGCATAAattaaga
i caePb3.Scfld02_254    C 0 I 239
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21060154 309 - 21540570 I
e caeSp111.Scaffold630  15381754  0 - 20921866 C
e caeRem4.Crem_Contig24   356136 557 -  1162296 I

a score=0.000000
s ce10.chrX               533040 651 + 17718866  
e caePb3.Scfld02_254      135966 239 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21060154 309 - 21540570 I
e caeSp111.Scaffold630  15381754   0 - 20921866 C
e caeRem4.Crem_Contig24   356136 557 -  1162296 I

a score=273.000000
s ce10.chrX               533691 3 + 17718866 AAA
s caeRem4.Crem_Contig24   356693 3 -  1162296 AAA
i caeRem4.Crem_Contig24 I 557 C 0
e caePb3.Scfld02_254      135966 239 +   193288 I
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21060154 309 - 21540570 I
e caeSp111.Scaffold630  15381754 0 - 20921866 C

a score=-88.000000
s ce10.chrX               533694 3 + 17718866 AAT
s caeRem4.Crem_Contig24   356696 3 -  1162296 TGC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      136205 3 +   193288 AAC
i caePb3.Scfld02_254    I 239 C 0
e caeJap4.Scaffold54       85601 5998 +   258924 I
e cb4.chrX              21060154 309 - 21540570 I
e caeSp111.Scaffold630  15381754 0 - 20921866 C

a score=233.000000
s ce10.chrX               533697 2 + 17718866 TT
s caeRem4.Crem_Contig24   356699 2 -  1162296 TA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      136208 2 +   193288 TC
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       91599 2 +   258924 TC
i caeJap4.Scaffold54    I 5998 C 0
e cb4.chrX              21060154 309 - 21540570 I
e caeSp111.Scaffold630  15381754 0 - 20921866 C

a score=129667.000000
s ce10.chrX               533699 372 + 17718866 ACCTTCTTGGCGAGCACATCCTCCCAGACAACTCCTTTGAACATATCATGTGCCTTGACAGTTGCAGTTCCGTCCGGTCCGTTGCCAAGACGTTGCGTCGGATCGCGGACAATCAGTTTGTTGACAAAACCTCTCTCACGTGGGCTTAAAACTTTTGGAAGTCGTGGGCGCTTCTGGAAAAC---------GTGT---TGAAATGAGGGAAA-----AACTGTAGGACA--CTTACCTTTGCAGTGCTATCAGAGTACTCTT------TGCTGTCAGCGCCATCAAATACAGCCTTGTCGGAACGCATATCGCAATAAGTGATTCCAACAGCCCACCAGTCGCAGGAAGTGCCGTACTTTTTCTCCAGGTGTACCTCCGGGGCCATGGTATCTAAAA
s cb4.chrX              21060463 377 - 21540570 ACCTTCTTGGCCAGCACATCTTCCCAGTTGACGTTTCGGAACAGAAACTGCTTCTTGATATCATCAGTACCGTTCGTTCCATAACCAATACGAGCGACTGGGTCTGCAACGAGAAGTTTCTTGACGAACTCTCTCTCCCCTTGGTTTAGCTCCACTGGAATTCTGGCACGcttctaaaaaag---------aaattgttcAACTCATCATCGCTTG-ATTTATT----------ACCGTGCATGTAGATTTGGAGTACTCGATCTCGCTGCTATTCTTGGGGTTGAAAACTGATCTCTCACTGCGCATGTCGCAAAGTGTGATACCGACTGACCACCAGTCGGAAGCTGGTCCATAGCACTGCTTTTGAAAGATTTCCGGAGCCATCACATCTGTTG
i cb4.chrX              I 309 I 38
s caeRem4.Crem_Contig24   356701 372 -  1162296 ACCTTCTTTTCGATGACATCTTGCCAGCACACAGTCTTGAAGATGTTGTGCGCCTTGATGTTTTCAGTTCCGTTGTCTCCACCTCCGAGACGGTTGCATGGATCCCTCACAACCACTTTTGTGACGAATTCTCGCTCTCGACACGACAAGCAAGCAGGAAACTTCGGGcgcttctgaaaaaa---------ggttGGATAAGCTTTTAAAGACTCGAAAATAGT----------ACCTTCGCCGTGCTGTTCGAGTATTCGA------GGCTGTTTCCTCCCTCGAAGACTGACTTGTCGCTTCGCATATCACAATAAGTGATCCCGACGGCCCACCAGTCACTCGCTGGGCCGTACTTCTTCTTCAGGTGAACTTCCGGAGCCATTGTGTCTGCAA
i caeRem4.Crem_Contig24 C 0 I 27
s caeSp111.Scaffold630  15381754 375 - 20921866 ATCTTCTTGGCAACAACATCATCCCAGTTGACGGCTTTGAAGATGTCATGGCGCTTGACATACATGGTACCGTCTGGTCCAGTTCCAAGGCGCTGCGATGGGTTGCGGACAATCAAGCGATTGAGGAAGCCGCGCTCGCGAGGGGAAAGACACTTTGGAAGTCTTGGACGTCTctggaataa----------tttttatgaaa-gaaCATGGAT---ACTCATTGAATA--CTCACCTTGACAGTGCTCTCCGAGTACTCGG------TGCTTGTGTCGCCGTCGAAGCATGGCTTGTCACTGCGCATATCACAGTAAGTGATTCCAACCGCCCACCAGTCGCAAGATGGTCcgtatttcttcttcaggtGGATTTCCGGCGCCATGGTGtctgaaa
i caeSp111.Scaffold630  C 0 I 17
s caePb3.Scfld02_254      136210 378 +   193288 ACTTTCTTCAGAATTACGTCTTGCCAAAGAACATTCTTGAAGTAATCGTGTTGTTTTATTGCCGATGTTCCGTCTACTCCACCTCCAAGGCGTTGTGCTGGGTCGCGAACGATCAGTTTATTAACTAAACTGCGTTCGCGTGGTGACAAGCAATTTGGAATCCGCGGGCGTTTCTTCAACAATAGATGAATGTTTAtatgaaactatcaaaaac---aatcGTT----------ACCTTCACAGTGCTTTCCGAGTATTGCA------CACTGTCATCGCCATCAAAGACTGACTTGCTGCTACGCATATCACAGTACGTAATGCCGACAGACCACCAGTCGCAGGCTGGTCCATAGCGTTTCTTCAAATGAATCTCGGGAGCCattgtgtctgaaa
i caePb3.Scfld02_254    C 0 I 818
s caeJap4.Scaffold54       91601 374 +   258924 AACTTTTTAGCGGAAACATCCGACCATTCAACATCATTGAAAAACTCATGACTTTTGATTTCTTCGCTACCCAAAGAGCCACCACCCAAACGCTTTTCCGGGTCGCGAACGATAAGTTTGTTCACGAAACCTCGCTCCTTCGGGGACAAtacttttggaaattttgggcgtttctgaaaatt---------ttgtacATAGAA-taccaa-------aaatattaaaaacccTCACTTTTGCAGCATTATCACAATATTCCT------TATTATCGTCACCATCCCAAAGTGTCGATCGACTCCGCATGTCGCAGTACGTCACTCCGACAGCCCACCAATCTGCAGCGAAGCCATATTTTTGTCCCATGTGAATTTCTGGGGCCATaatgtctgaaa
i caeJap4.Scaffold54    C 0 C 0

a score=0.000000
s ce10.chrX               534071 27 + 17718866 TTGGGATTTTAACCACTTAAAGTAAAT
e caePb3.Scfld02_254      136588 818 +   193288 I
e caeJap4.Scaffold54       91975  0 +   258924 C
e cb4.chrX              21060840 38 - 21540570 I
e caeSp111.Scaffold630  15382129 17 - 20921866 I
e caeRem4.Crem_Contig24   357073 27 -  1162296 I

a score=-30622.000000
s ce10.chrX               534098 137 + 17718866 GTATTTAGAACA----------------------ATATTTTGT-----------TCTTTTTGAAAAGATGAGCTTGTAAGATATATTTTAT-------------------ATTAAAATCATGGTAACA----------GCTCAAAGTTTTTTGTTGTTTGCAACGA--TAATTTTTTAGTT--------------------------TTGTGAATTTATAATACTGA
s caeRem4.Crem_Contig24   357100 219 -  1162296 atat---gatcaGACAGAAAATACGAACACGGCTATAACTTCTCTatcaagggaagtctttggagacgcg-gctttcaa---acaatctataaatttggtaacaggtactttcgactacgagGAATCCATTTCTGCCCATTAAAACATTCTTAATGTTT-TAGCGAGCCGAGCTTTGAGCTCACAagcttttcatatttttaagcTTTTCTTGACCCCTGCTTTAGG
i caeRem4.Crem_Contig24 I 27 C 0
s caeSp111.Scaffold630  15382146  64 - 20921866 ----------------------------------ATGTTTTC------------AATCTCTGAGAA--------------------------------------------TTCGAATTCAAGCTATCC--------------------------------TGACTAGCTA----TGGAGCT-------------------------------------TGATATAGA
i caeSp111.Scaffold630  I 17 C 0
s caeJap4.Scaffold54       91975  42 +   258924 -------------------------------------------------aaaaaaggttttgtaAA----------------AAGTTTAATg------------------attaaataaaactaa------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      136588 818 +   193288 I
e cb4.chrX              21060840  38 - 21540570 I

a score=-20537.000000
s ce10.chrX               534235 117 + 17718866 TATTCATTTT---------------------TCCACAGTTTGGTCTACTATATTGCGGTTTCTCAG-------------------------------------------------------TGAT------------TGTGATGAATTTC---------------------------------------------------------AGCCGGCAG-------------------------------------------AAAATACAT----------------------------CAGAATTCGGCTTG----------CTTTTTTTTTTAAGTGC--AAATAA--------
s caeRem4.Crem_Contig24   357319 352 -  1162296 AACCCATTTTTAGCATTTTATAAGGGTTAACCACAGGGGTTGATATTTCAGACGGT-TTTTCTCAGCGGCAATTGAATAGCACAAAGCGAAAATTTGGGATCTGCCTAATCAAGTTGTCCTTAACGACTGGTAGCAATTTGAagcgttttcaaatttgtgacCCCCTGAGGTTCCCTtgtgagagctcataacttgctCAAAGAGACATTCAGCAGGTTTTGATGAGAGAAATGGACTCCctgtagtcgaaagtaccgaTAACCAAATTTACAGGTCGTTTGAAAGCtgcgttttcaaaaactttccttGTAAGGCACAACGTTTCCTCAAAAGTGCCGAAGTACGCTAACAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382210  67 - 20921866 AATGTCTTTT------------------------AAGGCTAGATGC---------------------------------------------------------------------------TAAC----------------AAGCATCTT---------------------------------------------------------ATTAAACACGTT----------------------------------------TGATCAAAT----------------------------------------------------------CTCGAAAATAC----------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      136588 818 +   193288 I
e caeJap4.Scaffold54       92017   0 +   258924 C
e cb4.chrX              21060840  38 - 21540570 I

a score=-2869.000000
s ce10.chrX               534352 11 + 17718866 GGAAAAAATCG--
s caeRem4.Crem_Contig24   357671 13 -  1162296 CGCTAAAAATACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382277  1 - 20921866 ------------T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      137406 11 +   193288 -gaaaaaaat-ct
i caePb3.Scfld02_254    I 818 C 0
e caeJap4.Scaffold54       92017  0 +   258924 C
e cb4.chrX              21060840 38 - 21540570 I

a score=1332.000000
s ce10.chrX               534363 2 + 17718866 TA
s cb4.chrX              21060878 2 - 21540570 TA
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   357684 2 -  1162296 CA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382278 2 - 20921866 TA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      137417 2 +   193288 ta
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       92017 0 +   258924 C

a score=176096.000000
s ce10.chrX               534365 409 + 17718866 CGGCGAGTTCCGATTACACCCTGGATAGCGTCTTCAGCGTCACATCCAGTAGCTGAAAGACCATAATCCGTAATCATCAAGTGTCCATCATTTCCAATTAGAAGATTCTCCAGCTTAACGTCTCTGTGAACGATGTCTGCAATGCATTTTCAAT-TTAATAAAAATCTAC-CGATTT---C--------------------------CAGAATCA---ACTCACGTTTTT--------CATGAAGGTATCCGATCCCTTCAACAAGCTCACACAAGTAAAAATGAGC---AGATTCCTCGATCAA---------------------------ACACTCATTTTCCATC------ATTGTGAGCATGTCACCACCGCCAGCAAAAGGCATAACAAAAACCAAATGCCGTTTCGTCTGGAACGAGTAGCTCATTTTCATGAAGAACGGGTTGTGGATTGTGGTGAGGATCTTCCATTCGTGCTAAAAAA
s cb4.chrX              21060880 431 - 21540570 CGACGAGTGCCCACGGTTCCCTCCACAGAAGTATCTGAGTCGCAACCGGTAGCCGAGAGTCCGTAATCGGTAACGAGCAAGTGTCCATCGTTGGCAACAAGCAGATTCTCGAGCTTGATGTCACGGTGAACAATCTCTGAAA------------CTTAATCAATGCACTT----------T--------------------------TAAAATACAATACTTACGCTTTT--------TGTGAAGATATCCAACCGCTTCAACAAGTTCGCAGAGATAGAAAAACGCTTGATCGTCTTTCAACAACTCTTTGTTTTTGTCATCATCTGGTTTGTCTCCTTTGATCATCTCGATGTTTGTCAGCAAGTCACCACCTCCAGCTAATGGCATCACAAAGAGTATATGGCGAGCTGACTGAAATGCGTATTTCATGGTCATGAAGAACGGGCTGTCGATTGTCGTGAGGATTCTCCACTCGTgctgcaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   357686 406 -  1162296 CGTCGTGTTCCAATAACGCCTTCAATTGCGTCTTGGGCGTCGCAGTGGGTTGCACAGAGACCGTAGTCGGTGATGAGCATGTGCCCATCGTTGCCAATCAGGAGATTCTCCAGTTTGAGGTCCCGATGGAGGATATCTAAAA-------ATGATATTGATAAGAgctttttcgattttggt--------------------------CAGAATA----ACTCACTCTTTG--------AATGGAGATATGCTACTCCTTCCACCAACTCCACCAAATAGAAATGAGC---ATCACTCTCCGACAG---------------------------ACATCCTTTATCCATC------ATAGTCAACATATCCCCTCCGCCAGCGAGAGGCATAATGAAGACGATGTGGCGGTATGTCTGGAAGGCGTACTTCATTCTCATCATCAGTGGATGGCGAACAGTGGTGAGGATCTTCCATTCGTGCTGGAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382280 438 - 20921866 CGGCGAGTGCCAATGAGGCCTTCAGTTGAGTCTTCAGCAAACTTGTTAGTGGCAGCAAGTCCGTAATCGGTGACCAGCAAGTGTCCATCGTTGGCCACGAGTAGGTTCTCCAACTTGATATCCCGATGGATGATGTCTGGAA--AACAAATCAT-TTGAGAAATGTTCGA----------TGTTTACATGTCAGACATAGGCTGAGCCAGCCGAAAATGGTAAAAATCTTACGTTGTGAGTGGAGGTATCCGACGGCTTCAACGAGCTCGCATAGATAGAAGTGAGC---TGATGGCTCCGAAAG---------------------------ACACTCCTTCTCAATG------AGCGTCAGCATATCACCACCTCCAGCAAGTGTCATGACGAAGATGAGGTGCCGGTTGGTTTGGAACGAGTATTTCATACTCATGAAGAACGGATTCTCAATTGTAGTGAGTATTTTCCACTCGTGCTGAAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      137419 407 +   193288 cgACGAGTTCCGATTGTGCCTTCAATAGCATCATCCGAGTTGCAACTAGTTGCCGATAGCCCATAGTCGGTAATCAGAAGATGTCCATCGTGTCCGACAAGCAAGTTCTCCAATTTCACATCTCGATGAAGAATTTctgaaacgaacaaaaaacgGTGATAGGTGTTCGT----------T--------------------------CAGCAAGAAAGACGAACCGTTTT--------CGTGGAGATATCCTATTCCCTCCACAAGTTCACACAAATAAAACTCAGC---AGACTTTTCGGTCAA---------------------------ACAGCTTTTTTCCATC------ATAGTAAGCATATCACCTCCTCCAGCAAAAGGCATGACAAAGACAATGTGTCGATGAGTTTGGAAGGAATACCTCATTGTCATAAAAAATGGATTGTTGATTGACGTGAGCAGTTTCCATTCGTGCTGCAAAA
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       92017 394 +   258924 cgccTGGTTCCAATCATGCCACCAATAGAGTCTTTTGAATCGCAGTGAGTGGCTGAAAGTCCAAAGTCTGTCAACAAGACATGTCCGTCGTTTCCAATGAGCAGATTTTCGAGTTTAATATCACGATGAAGGATTTCTAGAA----TAAAACGT-TTAATGCATTCATGT---ATT----T-------------------------------------ATGTACCTTTTT--------CATGAAGATAGCTGAGACCTTCAATCACTTCGCAGATATAAAACTTCGA---CTGATCTTCATCCAG---------------------------ACATTCCCGCTCTATC------ATCGTTAGCATGTCTCCGCCTCCTGCCAAGAGCATGACAAAAACCACTTTTCTGTTGGTTTGAAACGAGTATGCCAGTTTGATGAAGAACGGATTGTTTATTGTGGTAAGAATATTCCATTcatgctgaaaaa
i caeJap4.Scaffold54    C 0 I 1154

a score=-5438.000000
s ce10.chrX               534774  5 + 17718866 A--------------TTAA
s cb4.chrX              21061311  5 - 21540570 aa-------------ttc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   358092  5 -  1162296 AA-------------TTA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382718 19 - 20921866 TAGTGGTGGAAAAAGTTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      137826  5 +   193288 T--------------TTAA
i caePb3.Scfld02_254    C 0 I 2650
e caeJap4.Scaffold54       92411 1154 +   258924 I

a score=-5593.000000
s ce10.chrX               534779 18 + 17718866 ATTTCAGGTTTGATGTGT----
s cb4.chrX              21061316  3 - 21540570 -----aaa--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   358097 13 -  1162296 -----GTTGCATTTCTGC----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15382737 18 - 20921866 ----AAGATCCATTCGGTGGAC
i caeSp111.Scaffold630  C 0 I 44
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I

a score=670.000000
s ce10.chrX               534797 12 + 17718866 AATTGTTTTGGT
s caeRem4.Crem_Contig24   358110 12 -  1162296 GGTTGTGTTGGT
i caeRem4.Crem_Contig24 C 0 I 388
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e cb4.chrX              21061319  0 - 21540570 C
e caeSp111.Scaffold630  15382755 44 - 20921866 I

a score=249.000000
s ce10.chrX               534809 25 + 17718866 TGTCATATTTGTGC---AATAGAAATTG
s cb4.chrX              21061319 24 - 21540570 ----atacttGCACGCAAACGAGAATTC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e caeSp111.Scaffold630  15382755 44 - 20921866 I
e caeRem4.Crem_Contig24   358122 388 -  1162296 I

a score=182.000000
s ce10.chrX               534834 31 + 17718866 AAAAATAAAAGTGAA------ATAATTTTGTACGATT
s cb4.chrX              21061343 31 - 21540570 ------AGATCTCACTTTTTGAGAATTGCATACCGTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15382799 31 - 20921866 AGAAGGAAAACTGAT------ATAAATGAATATGGCT
i caeSp111.Scaffold630  I 44 I 220
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e caeRem4.Crem_Contig24   358122 388 -  1162296 I

a score=-2116.000000
s ce10.chrX               534865 308 + 17718866 TTTATCATTCTCTACTGCTT--ACCTTGAAGCTCAAGATTTTGTTCATGCACAGGGATGTGTTTTGCCaaatttgccgagtttgccgagctcggcgaattttgtggtttgggccgcacacatcacaaatttgacagtacaattttgactaaaactattgattttgtc---cccaaaaaatttggtaaaatgacacaaaatagagttattccgacgattacgcagacttgttcaaaaaccaaaagtgtgcaataaattcagtCC--------------AACAGTTTTATACTCATTTAATTTT--------------ACTTC-------AAGTTCTGCTCATGTCATAA
s cb4.chrX              21061374 256 - 21540570 GTTcttattttcaattattcagaCCTCGAGGTTGGGGGTTACGGTCA-------ATATATTTTATACTAATATTG--------------------GATGCTCAtgatttt---------cttatcaaattc-------------------AAATAACTGTTTTTGCCTTACTTAAGCTATTAGACAGACTGCCAGAA---------------ATGATTAAAC------------------GATATATGGAATCAATTCTGGCTGATCTCATGCTCCGAACCGTTTTA---CCATTAGATTTTCTATCTCTAAGACGACTTCGGTGGCGAAATGCC-CCGGTGTCGAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e caeSp111.Scaffold630  15382830 220 - 20921866 I
e caeRem4.Crem_Contig24   358122 388 -  1162296 I

a score=-6949.000000
s ce10.chrX               535173 137 + 17718866 ---TTTTTGACAGAAATAGTTGAATCGAGTATTGGAAATATTTTTTAACCAGAATACTTTGTGATTTTTTTTTTGACCTAATCAGTTGTTTTTGGGGTACTGGTATTTTTTATTTATTTTGATGATGATTTTTTAATGCG
s cb4.chrX              21061630  66 - 21540570 -CGTCTGGTGGCGGAACGGCTC------------------------------GGAGCCGAA--------TCTTGAATTAtatc--------------------------tgaatatttgaaaaaaaaaact---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15383050 107 - 20921866 TCTTTTGCGTAGAAAGtgactcaa---------aaaactttttgtttagaagaaaactgag-------TTCTTGAGCCAAATCGTCTGATTTTGGag--------gtttttatttcttcaaatggaaaact---------
i caeSp111.Scaffold630  I 220 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e caeRem4.Crem_Contig24   358122 388 -  1162296 I

a score=100.000000
s ce10.chrX               535310 1 + 17718866 C
s caeRem4.Crem_Contig24   358510 1 -  1162296 c
i caeRem4.Crem_Contig24 I 388 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       92411 1154 +   258924 I
e cb4.chrX              21061696 0 - 21540570 C
e caeSp111.Scaffold630  15383157 0 - 20921866 C

a score=36981.000000
s ce10.chrX               535311 111 + 17718866 TACCTCAACCATATCCTTGTGCTTGGACATCCTTCTCTTCTCCATCACTTTCATCGCATAAATCGTTTCAGTATCGCACCCATTAAGCTTGCGTACGGCGGCCACCTAAAA
s cb4.chrX              21061696 111 - 21540570 cacatcaacCATTTCCTTGTGtttcatcatcttctttttttccatagCCTTCATCGCGTAGATGGTCCCCTTGTcctttccagtttttttctcaacgGCAGCAacctaaaa
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24   358511 111 -  1162296 taCATCCACCATCTCCTTGTGTTTTCCCATTCTCTTCTTATCCATAGCTTTCATGGCGTAGACGACGCCAATGTCCTTTCCGACATTCTTCTTCACTGCGGCAACCtgcaa
i caeRem4.Crem_Contig24 C 0 I 793
s caeSp111.Scaffold630  15383157  99 - 20921866 cACTTGGACCATGTCCTCATGCTTGATCATCCGTTTCTTCTCCATCACCTTCATTGCATAAATCTCGCCTTGATCGACTCCGCACGTCTTTCTGGCGGC------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       93565 111 +   258924 TACATCCACCATTTCCTTCTTGTCTAGCATTTTCTTTTTGTCCATAACCTTCATCGCGTAGACAGTTCCCTTGTCCTTTCCATCCATCTTACAAACCGCGGCAACCTGTTA
i caeJap4.Scaffold54    I 1154 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I

a score=29.000000
s ce10.chrX               535422 3 + 17718866 ATC
s caeJap4.Scaffold54       93676 3 +   258924 ACT
i caeJap4.Scaffold54    C 0 I 30
e caePb3.Scfld02_254      137831 2650 +   193288 I
e cb4.chrX              21061807 33 - 21540570 I
e caeSp111.Scaffold630  15383256 0 - 20921866 C
e caeRem4.Crem_Contig24   358622 793 -  1162296 I

a score=0.000000
s ce10.chrX               535425 30 + 17718866 CAATAGTTTACACATATTTATAATCAAAAA
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93679 30 +   258924 I
e cb4.chrX              21061807 33 - 21540570 I
e caeSp111.Scaffold630  15383256  0 - 20921866 C
e caeRem4.Crem_Contig24   358622 793 -  1162296 I

a score=-3304.000000
s ce10.chrX               535455  8 + 17718866 ATTT---GCTC
s cb4.chrX              21061840 11 - 21540570 TCTTAAAGATT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24   359415  8 -  1162296 atgTACA---T
i caeRem4.Crem_Contig24 I 793 C 0
s caeSp111.Scaffold630  15383256  4 - 20921866 -------ACCA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93679 30 +   258924 I

a score=26578.000000
s ce10.chrX               535463 52 + 17718866 ACCTCTCCATATGCTCCGCTTCCGATGTGCTTCAGAATTTCAAAATCTTCGA
s cb4.chrX              21061851 52 - 21540570 ACCTCTCCATAAGCTCCATTTCCAATGTGCTTCAGGAACAAGAAATGGTCGA
i cb4.chrX              C 0 I 553
s caeRem4.Crem_Contig24   359423 52 -  1162296 ACTTCTCCATAGGCTCCGCTTCCAATGTGTTGCAGCATGTCGAAGTGTTCAA
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold630  15383260 52 - 20921866 ACTTCTCCATAAGCTCCGCTGCCAATGTGTTTGATAACTTCGAAATCTTCGA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       93709 52 +   258924 ACCTCTCCATATGCCCCACTGCCAATATGCCGGAGTACATCGAATTGATCGG
i caeJap4.Scaffold54    I 30 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I

a score=1922.000000
s ce10.chrX               535515 26 + 17718866 ---TTGTGGCGGCT---GGTGCACTGAAAATG
s caeRem4.Crem_Contig24   359478 26 -  1162296 ---TTGCTGTTGCt---ggaagtctgaaaatc
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold630  15383312 26 - 20921866 ---TTGTGGCAACT---GGGCCGCTATAAATG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       93761 32 +   258924 CACACGCGGTCATCTTGGGTGCACCGCAAACG
i caeJap4.Scaffold54    C 0 I 2723
e caePb3.Scfld02_254      137831 2650 +   193288 I
e cb4.chrX              21061903 553 - 21540570 I

a score=575.000000
s ce10.chrX               535541 3 + 17718866 AAT
s caeRem4.Crem_Contig24   359504 3 -  1162296 agt
i caeRem4.Crem_Contig24 C 0 I 5966
s caeSp111.Scaffold630  15383338 3 - 20921866 AAT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21061903 553 - 21540570 I

a score=296.000000
s ce10.chrX               535544 410 + 17718866 TGCATATTGCGTACCGAGTAGCGATGCATTTTTGAAGGTATCACTTTATTAATTCAAATTAAAACCAAATACATGTAATTTGGTATTTTAACAGTATGGCCTGGCTGTGTAATCGATTTTTTTGCTAATAAACCAATTAACTTACTGATTTTCTCCATTCTCGCCGTTCGTCATGTTTGTGGACGACTCCGGACACTCTGTCATCAATGTAGGCTATAATAATAAGTTTTAAGCCA------CAAAAAAATTATGCGGAAGAGATAGAATAAAACAAATCGAGAAAATAA---TAGTGGAATAGCCAAAAAAGAGGCGATTCGTGTGTAAAACTGCGGGAGAGAGAGACAGAAGGGCAGAACGGGTGCAACGTGTCCTCC------AATG-------TGTGAGAAAGAACATGAGACGCAGATAGCTAGAGA
s caeSp111.Scaffold630  15383341 368 - 20921866 TAAGAGTGACGGAC---------ATGAATTCTCAAAGATTTACC--TATAACTTC----CATATCTAGTTGGAtcaaattctttcttttggc----TCTCCTGGCCG----------TTTTCGGC------GCCATTCTTCTGACTCAG-------ATTCTTGTTGTCTGGCAT-TGCGTTGGCATATCCT----CTCTGTGG--AGTGAGAGCTACTGTC-----TCCGCAGCCATTCggcctgaaaaatgaag-gaaatgaataggaaaaagaaacgcgcggaaaagaagcaagtagaaagtgctgaaaCCATGCACTGTGTGT-CAGTTCCGCGGGAA--------AAGAGGGCATACCGGGTACAACGTGTCTCCCCcgaaaaatgacggaaatacgatgagaaaaacgagacGCAGGTGGTGGGAGA
i caeSp111.Scaffold630  C 0 I 2436
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21061903 553 - 21540570 I
e caeRem4.Crem_Contig24   359507 5966 -  1162296 I

a score=0.000000
s ce10.chrX               535954 63 + 17718866 GGTGAAAATGACGAGACACTGGTACAGTGGATATATTGGTGAAACGGGGGAAGACATTGATGA
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21061903 553 - 21540570 I
e caeSp111.Scaffold630  15383709 2436 - 20921866 I
e caeRem4.Crem_Contig24   359507 5966 -  1162296 I

a score=2633.000000
s ce10.chrX               536017 67 + 17718866 CGTAGAGAACTGGG------AGACGCAGGAGGGCAGTGTTGTGCGACAG-AAGATTTGGCACATTGCCAAGAAA
s cb4.chrX              21062456 74 - 21540570 CGCAGAGTACGGGACTCCGAAGGGGTAGGAGAGTGGCGTGGTCAGACGGGAACACTTGGCACATTGCCAAGAAA
i cb4.chrX              I 553 I 1309
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeSp111.Scaffold630  15383709 2436 - 20921866 I
e caeRem4.Crem_Contig24   359507 5966 -  1162296 I

a score=0.000000
s ce10.chrX               536084 1351 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15383709 2436 - 20921866 I
e caeRem4.Crem_Contig24   359507 5966 -  1162296 I

a score=35.000000
s ce10.chrX               537435 60 + 17718866 AACTTGGAACGTTTTCCGCCAAAGGCGATTGTGAACATATCCTTGAGA----CATTTATAAATT
s caeSp111.Scaffold630  15386145 56 - 20921866 AATCTGGGTCGTTTTCC-----AAGTGATACTCAAC---CCAGTGAGAGTATTGCTCACAACAa
i caeSp111.Scaffold630  I 2436 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   359507 5966 -  1162296 I

a score=7822.000000
s ce10.chrX               537495 152 + 17718866 GGGAAAATGAATAGGAAGATACAACCAGAAGTGCATTTATTCATCAGTTTCCAGGTTTGAGTCAAAAATTCATCAATTTGATTGATGCTCATATTTTTCGAAGTGCGGTAAAGAATGCGGTCAATTGATTTAAAATTGAGAAAATCTGAAAA
s caeRem4.Crem_Contig24   365473 151 -  1162296 GGGAGAACAAACAAGAAGATGCATCCTGTGGAGAAATTGTCCATGAACTTATGCATATGACTCATGAACTCATCAATTTCCACAGCGTCCATATGAGTTGGTGGGCAGAAGAGAACTCGATCTACCACCTTTGGGTCGAAGCAACCTGGAA-
i caeRem4.Crem_Contig24 I 5966 C 0
s caeSp111.Scaffold630  15386201 152 - 20921866 ggaaagatgaagaagaagacacatCCAACAGAGCAGGTCTTCATCAATTTGAACAGTTTATCAAAGAGCTCCGCCTGTTCGGTATGCTCGAGCTCTTTGGAAGAGCGGTAAAGGACGCGCTGGACACTTTTCATGTTGAACCATTCTGAAAG
i caeSp111.Scaffold630  C 0 I 102
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I

a score=-560.000000
s ce10.chrX               537647  99 + 17718866 ATATTTTTACAAAAGTATCAGTTATATACCACTAT------------------ACCTGGTAAATTTTCAAAAGATGGCGCCAAGACCAGATTGTAGTGATCATTCTTGAAATTTCG---G
s caeRem4.Crem_Contig24   365624 108 -  1162296 -------TACACACG----ACTTACATTCC-CTATCCGGAATTTGTATTTGACACCTGGTATTTTACGATACGATTGAGAAATAATCAACTGGAAATTATCACACTTCAACCCACACATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15386353 102 - 20921866 I

a score=485.000000
s ce10.chrX               537746 96 + 17718866 CTTTTGGCATAATCAATGTTTGTTTGGATAAG-ATTTTTTTGTTTCTCACTTTTGACAAGTCCAATAGTTTGGCACTGAAAATATTGTTTTAATTAT---------
s caeRem4.Crem_Contig24   365732 93 -  1162296 TTCTGTGCCGTCCCAAGGTTATCCAATACAGC-TTTGGCGTGTCCCTCAGTTTTCAGCAGACCAATGGCATGGCACTCAAA---TTGTTACAATTAT---------
i caeRem4.Crem_Contig24 C 0 I 24
s caeSp111.Scaffold630  15386455 97 - 20921866 CATTGAGCACATTTAATATTCTCCTCCGCGATATCCAACTTGT-CTTGACTGTTGACAAGTCCAATCAAACGACACTGAAA--------ATagtcattttctcttt
i caeSp111.Scaffold630  I 102 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I

a score=259.000000
s ce10.chrX               537842 5 + 17718866 AGCTT
s caeSp111.Scaffold630  15386552 5 - 20921866 atctt
i caeSp111.Scaffold630  C 0 T 27584
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   365825 24 -  1162296 I

a score=0.000000
s ce10.chrX               537847 982 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15386557 27584 - 20921866 T
e caeRem4.Crem_Contig24   365825  24 -  1162296 I

a score=106.000000
s ce10.chrX               538829 13 + 17718866 TCTTGGTTCATCT
s caeSp111.Scaffold630  15358973 13 - 20921866 tcttcctcccaTT
i caeSp111.Scaffold630  T 27584 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   365825 24 -  1162296 I

a score=3919.000000
s ce10.chrX               538842 274 + 17718866 TACTTTCGCAATTCTTGGCATTTCCAAAATATTTTCTCCTAATCCAGTGTTCAAATCAAGCACAAACATCCCATTTTTGATATCCACCAACTTCAAGAGATCTATAATTGGAGATCCATAACGAGCAGAAATACGAATTTGCGGATAAGTTTGTTCCCATC------TGGAAATAATGGAATTAAT--------------TT------------GTTTGATGAA------------AATT-----------------------------GAAGACAATA-------ACCCCAGAAGCTTGATGCCGAAAAAATAGGAACTAGTGTTCATGTGGATCTCAATATGGAACTTTGTG
s caeRem4.Crem_Contig24   365849 354 -  1162296 TACCTTTGGGATTTTTGCAAGCTCCATCAGGTTTTCTCCAAGACAGACTTCTACATCAAGCACAGTCATCCCATCTTGGATATCAAGAAAATTAATATAGTCAGCGATTGAGTCGCCGTATTTTTTAGTGGAGTGGAGATGAGCATATGAATCTTcccagctgaaaatgaaaaataatggaGGGATGATGAGTAGTTTGATTACAGAGACAATCGTCAGGTGAATTTgaagtttcgaattttcagtttttacctACCATTGACACTGAGAAAAGTAAAATTCTCTTACCTTAGCAATCGAAGTCCGATAAAAAATGAGCCCGAATTCATTTGAATACCAATATGAAACTTCGCA
i caeRem4.Crem_Contig24 I 24 I 26
s caeSp111.Scaffold630  15358986 264 - 20921866 TACCTCCGATGTCTTTGCCAGCTCCAACAAATTTTCAGCGCCTCCCGCATTCAAATCCAACACTGTCATTCCCTTCTTGACGTCAACTAACTCCATAAGATCTTTCATCGGAGCCCCATATCTTTTGCTGG------------------------------------TaaaaaaaTACGGATAGAT--------------TTGCG---------gccaactgaa------------attttttggtttcccGAAATCCT----------AAAAGTTCAA----CCCACTCCGCCAAAACAAAGCCCATGTACCAAGAGTTGGTGCCCATGTGCACATCAATTGAGAACT-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I

a score=-217.000000
s ce10.chrX               539116 29 + 17718866 CTGGAAACCTC------TTTATCCAAGTCAACTGC
s caeSp111.Scaffold630  15359250 34 - 20921866 -TGGAAGGTTTTCGTGGTCTATTTCCgttattcat
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   366203 26 -  1162296 I

a score=2703.000000
s ce10.chrX               539145 51 + 17718866 TTGAAACTTCCACTTCAGATTGTTCTGAGCGGCATGTAACTCATAAAGTTT
s caeRem4.Crem_Contig24   366229 51 -  1162296 TTTGAATTTCCAGTCTAGATTTCTAACATAGGCTTGTCTCTCATAGATTTT
i caeRem4.Crem_Contig24 I 26 I 553
s caeSp111.Scaffold630  15359284 50 - 20921866 ttcaaattcccAGTTCAAATTCTTCTGGCGACTTTGAATTTC-CATATTCC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I

a score=846.000000
s ce10.chrX               539196 81 + 17718866 CGGCAATCGACGTT--TGAGTTTCTGGA--------AATTATATTTATACGCTTATTTTTTTAAAGTAAATAATGGGTACGATTCTGGAAA
s caeSp111.Scaffold630  15359334 77 - 20921866 TGGCAA-CGACAGTGGCGAGCCTCTGAAAGGAAGTCAATTATTTTGATG----------GTTGAAGGA---AATGGGAATCACTCTGGAAA
i caeSp111.Scaffold630  C 0 I 2653
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   366280 553 -  1162296 I

a score=0.000000
s ce10.chrX               539277 928 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15359411 2653 - 20921866 I
e caeRem4.Crem_Contig24   366280 553 -  1162296 I

a score=2188.000000
s ce10.chrX               540205 73 + 17718866 GAGAATTTCGAGCCAATCATGTACATCTCGTCGGCTACAAACCATAATTCTTGCGGAGTGTCAACTTTAAATG
s caeRem4.Crem_Contig24   366833 73 -  1162296 GAAAACTCGGAACATATCATGTACAAGTCTTCAGGCACAAACCAAAGTGCCCGAGGTGTTCTTACTTGATACG
i caeRem4.Crem_Contig24 I 553 I 11476
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15359411 2653 - 20921866 I

a score=0.000000
s ce10.chrX               540278 3625 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15359411 2653 - 20921866 I
e caeRem4.Crem_Contig24   366906 11476 -  1162296 I

a score=5623.000000
s ce10.chrX               543903 175 + 17718866 TTTTCAGTGGGAAAAGTAGACTTTC-GTAACTTCCTGAACATGCGCTACGAGAGAACCAGC--CGATCGAGCTGTAGCGAAATTCAACGACTCAACCAGACTTATGATTGGCTCCGCGAGTTCCACTTTGGATGGGAGAGAGAGATCTTTGTCGTCTACACCCATTTCGATCATCCGG
s caeSp111.Scaffold630  15362064 175 - 20921866 TTTTCAGTCG-ACGAGAAGACGCTCAGAAACTTCTTGAACGATCGCTACAAGCAAACGAGCAACAACCGTGCGCTGGTTA--TTCGTAGACTCAACAAAATCTACGACTGGCTTCGCGAATACCATTTCACTTGGGAGCGTGAGGTTCTGATGCTCTACTTCCACTTCGATCAACCGG
i caeSp111.Scaffold630  I 2653 I 1922
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   366906 11476 -  1162296 I

a score=0.000000
s ce10.chrX               544078 2544 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15362239 1922 - 20921866 I
e caeRem4.Crem_Contig24   366906 11476 -  1162296 I

a score=2813.000000
s ce10.chrX               546622 195 + 17718866 TTCATTTTCCATTTAGTTTATCTCTGAAAATCAATTCCTAC-GCTCAAAACTAATAAGGTACTTTTGTAAAAAAAAAACAAACTTTCGCTTCAGGAGAATGTTTCAGAAGCAACTTCAACGCTTTTTGATAGTGATCGAAATC-----GGCGGACATGTCGTCGACGCTTGCATCAAAGAAGAATAACATCGCGTCGACGT
s caeSp111.Scaffold630  15364161 173 - 20921866 ttcactttccctttcttttcttttt-----tctattcccgCCGCTC-------------CCCCTTTG-----AACCAACTAACCGTAGCTTCTGGCGATTGCTCGATGAGCCATTGAATCGATCTCTGATAGCGATCCAGGTCCTCTTGATAGTCA-GTCTTTGACGC----ATCAAAGTAGAAAATCATCGAACGAACGT
i caeSp111.Scaffold630  I 1922 I 4769
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeRem4.Crem_Contig24   366906 11476 -  1162296 I

a score=0.000000
s ce10.chrX               546817 2659 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I
e caeRem4.Crem_Contig24   366906 11476 -  1162296 I

a score=4235.000000
s ce10.chrX               549476 137 + 17718866 TTCTATTTTTAGTTGGAAAATCCGAAAAAGCAAGACACCTACTCTTTCATGAAACTTTTTGCGACACGTTGTGCATTTTGGAAAACGCATCTCCTCCTTACATATGGCACATTCGGTATCTTGCAGCTCATTTTCTA
s caeRem4.Crem_Contig24   784740 130 +  1162296 TTCTATACTT---CGGGAAAT--AAATGAGCATAACTCACACTCTT--ATGAAATCTTCTTCGACAAGGAGTACACTTTTTCAAACGCATCTCTTCCATACAAATTGCACAGGTCGTGTCTTCCAATTCAGATTCTA
i caeRem4.Crem_Contig24 T 46385 T 56646
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I

a score=0.000000
s ce10.chrX               549613 755 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21062530 1309 - 21540570 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I
e caeRem4.Crem_Contig24   784870 56646 +  1162296 T

a score=2190.000000
s ce10.chrX               550368 107 + 17718866 TTGACGAAATTGTCATTTGGTATTTCTCTACATAAAGCCTTTTGC-CATTCAAAGTAAAGTTGCGTTAGAGGGAAAGCTGCTT-------AAAATCATATAGAACTTTTTAAACT
s cb4.chrX              21063839 110 - 21540570 ttgacaaaatttttgatt--tactttttgagataactctttttttgtcttccaGGTA---CCACATTATGCGGAAGGTGTCCTTGGTCTGAAAGTCATATAGAACTTTTAAAACT
i cb4.chrX              I 1309 I 1864
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I
e caeRem4.Crem_Contig24   784870 56646 +  1162296 T

a score=0.000000
s ce10.chrX               550475 5589 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21063949 1864 - 21540570 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I
e caeRem4.Crem_Contig24   784870 56646 +  1162296 T

a score=30.000000
s ce10.chrX               556064 65 + 17718866 CACTTTTTCTGA------TAATATTTCTAAATCACCT-TTTTGATGTTCATCTTTTAAATTATTCGAAGAGT
s caeRem4.Crem_Contig24   378382 60 -  1162296 caatttttttgaactgtaGAACATGTGTGAATCACTTACTTTGTTGCCCATTCATC-------TCca-----
i caeRem4.Crem_Contig24 I 11476 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21063949 1864 - 21540570 I
e caeSp111.Scaffold630  15364334 4769 - 20921866 I

a score=2541.000000
s ce10.chrX               556129 14 + 17718866 TTTCTATTTCTTTC
s caeRem4.Crem_Contig24   378442 14 -  1162296 tttttatatctttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15369103 14 - 20921866 TTGCTATTTCTTTC
i caeSp111.Scaffold630  I 4769 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21063949 1864 - 21540570 I

a score=47154.000000
s ce10.chrX               556143 128 + 17718866 TCCAAAATCCTCAATAGATGAGATATATATTGCGCAGCTGACTTTAAGGTCTCCGCTTTCGACGGTTTTCGATCTCGTAATTGCTTCGGAAGATGGTTGCGCAACATGTTGAATGCGTTGCCGATTCT
s cb4.chrX              21065813 128 - 21540570 TCGAGTATTTGCAACAAATGCAAAATATATTGCGTCGCCGATTTCAAAGTCTCAGCTTTTGAAGGTTTACGATCTCTTAATTGTTTTGGAAGATGGTTGCGCAAAACGTTGAATGCGTTTCCAATTCT
i cb4.chrX              I 1864 C 0
s caeRem4.Crem_Contig24   378456 128 -  1162296 tccaaaacttgaagaagatgagagaTATATTGCGTTGCCGATTTGAGAGTCTCCGCTTTAGATGGCTTCCGATCCCGTAATTGTTTAGGAAGATGGTTGCGCAATATGGTGAATGCGTTGCCGATTCT
i caeRem4.Crem_Contig24 C 0 I 197
s caeSp111.Scaffold630  15369117 128 - 20921866 TCCAATATGCGcagaagatgagaaataTATTGGGTTGCCGATTTTAGCGTCTCTGCTTTAGACGGTTTGCGATCTCGTAATTGCTTCGGGAGATGATTGCGTAAGAGATTGAATGCGTTGCCAATTCT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I

a score=331.000000
s ce10.chrX               556271 3 + 17718866 AAA
s cb4.chrX              21065941 3 - 21540570 AAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15369245 3 - 20921866 GGA
i caeSp111.Scaffold630  C 0 I 17
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeRem4.Crem_Contig24   378584 197 -  1162296 I

a score=91.000000
s ce10.chrX               556274 1 + 17718866 T
s cb4.chrX              21065944 1 - 21540570 T
i cb4.chrX              C 0 I 121
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeSp111.Scaffold630  15369248 17 - 20921866 I
e caeRem4.Crem_Contig24   378584 197 -  1162296 I

a score=0.000000
s ce10.chrX               556275 765 + 17718866  
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21065945 121 - 21540570 I
e caeSp111.Scaffold630  15369248  17 - 20921866 I
e caeRem4.Crem_Contig24   378584 197 -  1162296 I

a score=436.000000
s ce10.chrX               557040 14 + 17718866 CAAATATAATATTG
s caeSp111.Scaffold630  15369265 12 - 20921866 CAAATAT--TATTT
i caeSp111.Scaffold630  I 17 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21065945 121 - 21540570 I
e caeRem4.Crem_Contig24   378584 197 -  1162296 I

a score=-1693.000000
s ce10.chrX               557054 13 + 17718866 AAAAGTTTGGAG-C
s cb4.chrX              21066066 13 - 21540570 aaaactttcaaaa-
i cb4.chrX              I 121 C 0
s caeSp111.Scaffold630  15369277 10 - 20921866 AAAA--GACAAA--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeRem4.Crem_Contig24   378584 197 -  1162296 I

a score=16564.000000
s ce10.chrX               557067 53 + 17718866 ACTTACGATTTTTGCCGGCATCGTTCTCGAGCGTTAGCACGTTCACGTGACAT
s cb4.chrX              21066079 53 - 21540570 actcacgatTTCTGTCGGCATCTTTCTCTGGCGTTAGCTTTTTCACGCGACAT
i cb4.chrX              C 0 I 4162
s caeRem4.Crem_Contig24   378781 53 -  1162296 actcACGATTTCTGACGACATCTCTCTCGAGCATTCGCTTTCTCGCGAGACAT
i caeRem4.Crem_Contig24 I 197 C 0
s caeSp111.Scaffold630  15369287 47 - 20921866 ACTTACGACTTTTGGCGACATCTTTCTCTTGCATTCGCTCTTTCGCG------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I

a score=-3995.000000
s ce10.chrX               557120 48 + 17718866 TTTGAATTTATAAAAT-ATCACCAATTACGTAATA-CTGAAGAAAGCTAA--------
s caeRem4.Crem_Contig24   378834 53 -  1162296 -----ATCTCTGGGAGAATCCTGAGACGCGCAAAGtaagaaatgacaaaaatggcTAG
i caeRem4.Crem_Contig24 C 0 I 13
s caeSp111.Scaffold630  15369334 18 - 20921866 -----------------ATTc---------------atgaagaaacagaa--------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I

a score=-359.000000
s ce10.chrX               557168 16 + 17718866 GTATTTTGTTATCTTA
s caeSp111.Scaffold630  15369352  1 - 20921866 ---------------a
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I
e caeRem4.Crem_Contig24   378887 13 -  1162296 I

a score=4280.000000
s ce10.chrX               557184  96 + 17718866 TGTT------CAGACAAATG--GTAAGCATTCAAATGTA--------------------AGGGGTACATATGTATTGCTCTCAAGTGGGTCGTCATAATGGAGA---------------CAGCTGTTTTTGATGAGGAC
s caeRem4.Crem_Contig24   378900 128 -  1162296 TGCTCAACAGAACAAAAACGCATTTA----CCAATTGTGGACGGAATCACTTCTGGAGTAGGCATACATATGTAG---TCTGAAGTGGG---TCATAATGGAGAGACGTTGTCTGCTTACAGCTGTTCTTGGTGAATA-
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold630  15369353  90 - 20921866 tgcT------AATAAAAATG--GTTA----CCAATTGTGG-------------------GAGTGTACATATGTAT---TCTGAAGTGGG------TAATGGAGAGA---------GTCGCAGCTGTTCTTGAGAGGAAC
i caeSp111.Scaffold630  C 0 I 327
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I

a score=582.000000
s ce10.chrX               557280 39 + 17718866 TCGGACACAAGGGGGTAAGTAAGTGT------ATCTGAAATGTGC
s caeRem4.Crem_Contig24   379028 42 -  1162296 ---GAAACGACACATTATGCAAGTGTGTGAACATTTCAAATGAGC
i caeRem4.Crem_Contig24 C 0 I 399
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I
e caeSp111.Scaffold630  15369443 327 - 20921866 I

a score=0.000000
s ce10.chrX               557319 453 + 17718866 AGAGAAATAGAACTGTTCCGAAGTAGCCTGATTGGGAACATCGTGCCTGCCTCGTGCCTGACTGCCTACTGGAAGAAAAAGTGTGAAGTGGTTTGCTAAATCTGCAAAACTTTATTTTAGGGTTTGGTCAATTTTAAGAAAAAATTGTCGCGGAAAGTTAAAAAAAAACGATTGGGGTGTTTCAGAAAATTGAAAATTGTTCCTGATATCTCTAGTTATGGTATTTGTGAAGTATACCTGTTCAAAAATGTTAACCATTTTGAAAAGTTTTCATAACTTTTTTTGTCCCTATCAGGCTCAGAATTTACTTTTTCCTAATAGTAAACCTAAATGTGCAAATAAATTTCACGTTTTATTAATTTGTCATTGAAAAAAACGAATGGAAAGCATATTGGAAATCATTTTTTTGCAGGTACACTTTTATGGGTTTTTTTATACTGGGTGCATACGTAA
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I
e caeSp111.Scaffold630  15369443 327 - 20921866 I
e caeRem4.Crem_Contig24   379070 399 -  1162296 I

a score=464.000000
s ce10.chrX               557772 93 + 17718866 CTTTTGAAAAAATTTGCGTTCTTTTTATTATTAATTTCTTATTCTTATTATTGACCTAATTTTATTGATCAC----GTCATAGCCACAGTTACGTTC
s caeRem4.Crem_Contig24   379469 88 -  1162296 CTTTAAGGAAACTTTGCAT-ATAGTACTTATCACTTCCTCAATATTATCAC--ACGTCACTT-GTTCATCACTAGAATTGTAATCAAAGTT-----C
i caeRem4.Crem_Contig24 I 399 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e cb4.chrX              21066132 4162 - 21540570 I
e caeSp111.Scaffold630  15369443 327 - 20921866 I

a score=1187.000000
s ce10.chrX               557865 32 + 17718866 AATAAAACATAAAGGAACCTGACCCTAACATC
s cb4.chrX              21070294 31 - 21540570 aataaaacataatgataaa-CACCTTTCATTC
i cb4.chrX              I 4162 C 0
s caeRem4.Crem_Contig24   379557 31 -  1162296 GAGAAAACATTTAGATAAA-GCCCCTTGTCTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I
e caeSp111.Scaffold630  15369443 327 - 20921866 I

a score=3943.000000
s ce10.chrX               557897 18 + 17718866 TGAATCACCAT-TGTTGGA-
s cb4.chrX              21070325 19 - 21540570 TGAATCATCTC-TATTAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   379588 20 -  1162296 TGAATCATCACTTATTTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15369770 19 - 20921866 TGAATCATCAT-TATATGGA
i caeSp111.Scaffold630  I 327 C 0
e caePb3.Scfld02_254      137831 2650 +   193288 I
e caeJap4.Scaffold54       93793 2723 +   258924 I

a score=6532.000000
s ce10.chrX               557915 22 + 17718866 ACAATAGTTAGCTAGTTAC--TGC
s cb4.chrX              21070344 18 - 21540570 ACAATAGT----TAGTTAC--TAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   379608 18 -  1162296 ACAATGGT----TAGTTAC--TGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15369789 15 - 20921866 ACAATAGT----TAGTTAC-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      140481 20 +   193288 ACAATGGT----TTGTCACAGAGA
i caePb3.Scfld02_254    I 2650 C 0
e caeJap4.Scaffold54       93793 2723 +   258924 I

a score=69445.000000
s ce10.chrX               557937 415 + 17718866  
s cb4.chrX              21070362 463 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   379626 460 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15369804 414 - 20921866  
i caeSp111.Scaffold630  C 0 I 120
s caePb3.Scfld02_254      140501 495 +   193288  
i caePb3.Scfld02_254    C 0 I 15
s caeJap4.Scaffold54       96516 377 +   258924  
i caeJap4.Scaffold54    I 2723 C 0

a score=-14167.000000
s ce10.chrX               558352 32 + 17718866 CCAAGTGTGAAAGATT--------------------TCTAGAAAAAAAGTGA
s cb4.chrX              21070825 35 - 21540570 ---------atgCGATTTGTAAGTTAAC--------ttcaaacttcagaaaa
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig24   380086 35 -  1162296 ---------TCACATTTCGGAgagtgtt--------ttctgaaaataaaaaa
i caeRem4.Crem_Contig24 C 0 I 302
s caeSp111.Scaffold630  15370338 40 - 20921866 CCAAATATGAActattttgataaa------------ttcCCATTTAAAATGA
i caeSp111.Scaffold630  I 120 I 11
s caePb3.Scfld02_254      141011 52 +   193288 TTaggttttatatttttcactaGATGAAAACTCATGTCCACAGTGAAACTGA
i caePb3.Scfld02_254    I 15 I 22
s caeJap4.Scaffold54       96893 31 +   258924 -----------ATGATTATTAGAACGCT--------TCCGTAATGAATGC--
i caeJap4.Scaffold54    C 0 C 0

a score=57923.000000
s ce10.chrX               558384 88 + 17718866 -TTTT----TAGACACAATACATTAATTCAAAGCGATTCAGTTACTGTCTTTGATGATATACAACGAAATCCAAATACAGGAGTACATCACGT
s cb4.chrX              21070886 88 - 21540570 -attt----tagaaACAATGCATTAATTCAAAGTGACTCAGTTGACGTTTTTGACAACATCCGGAGAAATCCAAACGCAGGAACACATCATGT
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24   380423 88 -  1162296 -tttt----cagacacaaTGCATTGATACAGAGTGATTCAGTAAATGTGTTTGACAACATTCAAAGAAATCCGAATGCTGGGGTTCATCATGT
i caeRem4.Crem_Contig24 I 302 C 0
s caeSp111.Scaffold630  15370389 88 - 20921866 -TTTT----TAGACAAAACTCACTGATTCAAAGCGATTCTGTTACCGTTTTTGATGATATTCAAAGGAATCCAAACGCCGGAGTTCATCATGT
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_254      141085 88 +   193288 -TTTT----CAGCCAAAGAGCTTCTATTCAAAGTGACTCAGTTGATGTGTTCGACGATATAAAAAAGGATCCAAACGCGAGGAACCACCCCGT
i caePb3.Scfld02_254    I 22 C 0
s caeJap4.Scaffold54       96924 93 +   258924 TATTTAACACAGGCGAAATAACTTGATTCAAAGTGACGCGATAAGTGTTTTTGATACTATTCACAGAAATGCAAATGCCGGAGAGAACCATGT
i caeJap4.Scaffold54    C 0 I 50

a score=-303.000000
s ce10.chrX               558472 1 + 17718866 T
s cb4.chrX              21070974 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380511 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370477 1 - 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      141173 1 +   193288 G
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I

a score=-1588.000000
s ce10.chrX               558473  9 + 17718866 GGT----CTTTTT---
s cb4.chrX              21070975  6 - 21540570 -------AGTTTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380512  9 -  1162296 -------AGTTATtct
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      141174 13 +   193288 AGTcacgattttc---
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I
e caeSp111.Scaffold630  15370478  0 - 20921866 C

a score=-2980.000000
s ce10.chrX               558482 56 + 17718866 ------------ACTCAAAACTAAATAATTTAA------AAGTTTATGAACCGGCTTTTGAATAGACATTTCAA-------------
s cb4.chrX              21070981 64 - 21540570 --------ATCAAAACAAGACCAATT--TTTAGGATAAAAAACTTCTAATCAGAATTACCGTCAAAtattctaa-------------
i cb4.chrX              C 0 I 42
s caePb3.Scfld02_254      141187 79 +   193288 atgatttcttaGAAAGATAacgtatt--tttcg------aaaatctttatcgaatttcatctaAAACCTTCcgaataaaagagaaaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I
e caeSp111.Scaffold630  15370478  0 - 20921866 C
e caeRem4.Crem_Contig24   380521  0 -  1162296 C

a score=-138.000000
s ce10.chrX               558538 50 + 17718866 GCTTGAAATTGCAATAAAACCTCGTTTTTTGATCGAATTATCCATTGAG--A
s caePb3.Scfld02_254      141266 44 +   193288 ccttgaaa---aaaacaaacaacat-----GAATGAAACATCTGCCGAGGTA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I
e cb4.chrX              21071045 42 - 21540570 I
e caeSp111.Scaffold630  15370478  0 - 20921866 C
e caeRem4.Crem_Contig24   380521  0 -  1162296 C

a score=-4949.000000
s ce10.chrX               558588 76 + 17718866 GTTTAATTAACTAGAA----GTATATT--GAAAGCTAATTTCA---GTCAATCATAGATATGGAATCATAGATATGGATGTTT---CA
s cb4.chrX              21071087 79 - 21540570 gtaaaaattaccaaaaacttGTTAAGTGATAAAATTAATGTCATCTGTTAAT------TCTGTAAATA-ATCGTTTGcggctttca--
i cb4.chrX              I 42 C 0
s caePb3.Scfld02_254      141310 55 +   193288 --------------------GTCTGGT--TGGAACTGTGGAAGTATGTTAAC------AATGAGATTGTAGCGATTCAGGTTT-----
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I
e caeSp111.Scaffold630  15370478  0 - 20921866 C
e caeRem4.Crem_Contig24   380521  0 -  1162296 C

a score=-1496.000000
s ce10.chrX               558664 17 + 17718866 ACTTATTGTGTTTTCGT------
s cb4.chrX              21071166 13 - 21540570 actt------tttttgttt----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380521 17 -  1162296 actt------tttgaattttaga
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      141365  7 +   193288 ----------TCTTCAT------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I
e caeSp111.Scaffold630  15370478  0 - 20921866 C

a score=-24032.000000
s ce10.chrX               558681  98 + 17718866 AGTATTTTC-------AATGTTTTGAGTGCGATTTCtttaata---ttttaaaaaaatcaatacacatta--------------------catttttaatacatttttattaaaaaaaaaCATTCCCA
s cb4.chrX              21071179  58 - 21540570 -------------------------------gcggctttcaaa---tctcaaaaccG------TAATCTA---------------------ATCCGAACGAAAAAATCGTCA---------CCTTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380538 116 -  1162296 gctATTTTAGTTCAGAAAAACTTAGCAA---ATAGTTCgcaaaaactcataaaactgATGAATCAACCTATTTATGATGGTTCTCACCCTCCTCCTAGAAACAATATTATCG---------TTTGTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370478  72 - 20921866 ----------------AGTATTTTCCAATACTTCTATTTCAAT---TATAAAAACAA----ACCTCCCCA---------------------CTTTCTCCAATAATATTATCG------------CTCA
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_254      141372  66 +   193288 -----------------------AACTAGGTTtcggtttcagt---ttttgaga---------------a---------------------cgTTTGAACGTGACATAAATGACAGAAAAGGTTCTCA
i caePb3.Scfld02_254    C 0 I 337
e caeJap4.Scaffold54       97017  50 +   258924 I

a score=6816.000000
s ce10.chrX               558779 28 + 17718866 TAATGCAAGCTACACCACCTTGACACAT
s cb4.chrX              21071237 24 - 21540570 ATATGCA----ACCACACCTTGACACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380654 28 -  1162296 TCATGCAACACACCACACCTTGACACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370551 25 - 20921866 TCTTGCAA---CCCACACCTTGACACAT
i caeSp111.Scaffold630  I 1 C 0
e caePb3.Scfld02_254      141438 337 +   193288 I
e caeJap4.Scaffold54       97017 50 +   258924 I

a score=6990.000000
s ce10.chrX               558807 34 + 17718866 ATCAAGACCAGTTTTTCTTCATGCTTTTATCTAC
s cb4.chrX              21071261 29 - 21540570 ATTAAGACCAGtttttttCA-----TATGCCTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380682 28 -  1162296 ATTGAGaccagtttttttc------tctgactAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370576 28 - 20921866 ATTGAGACCAGTTTTTTAA------TGTGACTAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      141775 19 +   193288 ATcagtatcaattttt---------------ttc
i caePb3.Scfld02_254    I 337 C 0
e caeJap4.Scaffold54       97017 50 +   258924 I

a score=116362.000000
s ce10.chrX               558841 121 + 17718866 AGGATGAATTGGCAGTGAATAACGCTGACGAGTATTTCCAAGGAGATGTTGACTTGTCTGAACAACAAGTGAAAATTATTGAAGATCAGTTTACACAGGGCAAAAGAGAAAAAAGAAAGGT
s cb4.chrX              21071290 121 - 21540570 AGGATGAATTGGCTGTGAATAATGCTGACGAGTATTTTCAAGGCGACGTTGATTTGTCAGAACAACAAGTTAAAATAATTGAGGATCAGTTTGTGGAGGGCaaacgagagaaaagaaaGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380710 121 -  1162296 AGGATGAATTGGCAGTGAACAACGCTGACGAGTATTTTCAAGGAGACGTCGACCTATCGGAACAGCAAGTCAAAATAATTGAGGATCAGTTTACAGAGGGTaaacgagaaaagagaaaggt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370604 121 - 20921866 AGGATGAATTGGCTGTGAATAACGCTGACGAATATTTTCAAGGAGATGTAGACTTATCGGAACAACAAGTAAAGATTATTGAAGATCAGTTTGCAGAGGGGAAgcgagagaagagaaaagt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      141794 121 +   193288 aggatgagcTGACAGTAAACAATGCCGATGAATATTTCCAAGGAGATGTTGATTTATCCGAACAACAAGCTAAAATTATTGAGAATCAATTTATGGAAGGCAAgcgagaaaaacgaaaagt
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       97067 121 +   258924 AGAACGAACTGTCTGTCAATAAGGCTGACGAATACTTCCAGGGAGATGTTGATCTTTCAGAACAGCAGGTAAAAATCATTGAGGATCAATTTAACAGCGGAAAGCGTGAGAAACGGAAGGT
i caeJap4.Scaffold54    I 50 I 44

a score=-19649.000000
s ce10.chrX               558962 38 + 17718866 G------AAAATATGGATTTTTGA-----ACA-------------GCGTGTCACCCAATAAT
s cb4.chrX              21071411 42 - 21540570 A------TG----------CGGGA--TTCGTGGCAACTGATCC--GTGTGAGCATTATGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380831 36 -  1162296 a------TATTTTTTGGGTCAGGA-----ATATTAATTAATTC--GTGT-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370725 38 - 20921866 agaaaagcgtttttgaattcccaa---------------------ttgtaatatttgaa---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      141915 61 +   193288 a-attattttttttcaattttcaaagtttagattagccacttttttcattatttttgtaaat
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54       97188 44 +   258924 I

a score=53872.000000
s ce10.chrX               559000 100 + 17718866 TTTTAGATTGGAAGAAATCCATTGTATAAAAAGTGGGATACAAGAGGGCCTATTAGTTTTGATTATGCCGAAAGTATACCGTTCCAAACAAGACAAAAAA
s cb4.chrX              21071453  33 - 21540570 TTTTAGATTGGAAGAAACCCCCTATACAAAAAA-------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380867 100 -  1162296 TTGCAGATTGGAAGAACTCCATTGTACAAGAAATGGGACACACAGGGACCGATTAGTTTTGATTATGCAGAAAGTATACCTTTTCAAACAAggcaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370763  99 - 20921866 -ttcagattgGAAGAACTCCTCTTTACAAGAAATGGGATTCGAGAGGACCAATAAGTTTCGATTATGCGGAGAGTATTCCATTTCAGACACGACAGAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      141976 100 +   193288 tctCAGATTGGTAAAACCCCGCTCTACAAAAAATGGAGTACGAAAGGACCTATCAGTTTTGACTATGCGGAAAGTATACCTTCTCAAACAAGACGGAAAA
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       97232 100 +   258924 tttcagATTGGAAGAACACCGCTCTATAAACTCTGGGACTTGCAAGGACCGATAAGTTTTGATTATGCGGAAAGTATTCCAACACAAACTCGCCAAAAAA
i caeJap4.Scaffold54    I 44 C 0

a score=-3470.000000
s ce10.chrX               559100 6 + 17718866 TCAG--GT--
s cb4.chrX              21071486 4 - 21540570 TGGG------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15370862 4 - 20921866 TTAG------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      142076 6 +   193288 TCAGGT----
i caePb3.Scfld02_254    C 0 I 37
s caeJap4.Scaffold54       97332 6 +   258924 TCAG----GT
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   380967 0 -  1162296 C

a score=-2770.000000
s ce10.chrX               559106 23 + 17718866 GTGTGAAAGACTTAGAACTTATT
s cb4.chrX              21071490  8 - 21540570 ----------ATTCACGT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15370866 23 - 20921866 GTAGGAATTGcttcgaatttttc
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       97338 18 +   258924 -----TTATATTTATAATTAATT
i caeJap4.Scaffold54    C 0 I 20
e caePb3.Scfld02_254      142082 37 +   193288 I
e caeRem4.Crem_Contig24   380967  0 -  1162296 C

a score=-290.000000
s ce10.chrX               559129 13 + 17718866 TGTTAATTGAAGT
s caeSp111.Scaffold630  15370889 13 - 20921866 tcagatattaatt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      142082 37 +   193288 I
e caeJap4.Scaffold54       97356 20 +   258924 I
e cb4.chrX              21071498  0 - 21540570 C
e caeRem4.Crem_Contig24   380967  0 -  1162296 C

a score=-5640.000000
s ce10.chrX               559142 326 + 17718866 TTCAAAAATTACAATTGTTGTATTTTTGtaaaggtggagtagcgccaatggggattttgtctaaatacttttataatgatccgaaacgatctaatatcatgataaaacactctaaattttttttaatttttcataatttccggtcgaagttttggcaaattgccaaattgaaaagtatgcaactttgaggaaatccaaagcaatgtcgcatgttccgacccctacaatgtttcaatacgaatagttaaaacaaaatttaagtatgaaaaatgtagATTTGATGgaataggttttgacactttccacactggtgctgctccaccttt
s cb4.chrX              21071498 102 - 21540570 --------------------------------GGTGGA------CCGATAAG--------------------------------------------------------------------TTTTGATTATGCA-------------------------------------GAAAGCATACCATTTCAAACCAGGcagaa----------------------------------aatacggtaaatgaaaaaaactctCCCTTGtaaaaaacaaacattt-----------------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      142082  37 +   193288 I
e caeJap4.Scaffold54       97356  20 +   258924 I
e caeSp111.Scaffold630  15370902   0 - 20921866 C
e caeRem4.Crem_Contig24   380967   0 -  1162296 C

a score=0.000000
s ce10.chrX               559468 18 + 17718866 aaGTGAAAGAATCTCTAA
e caePb3.Scfld02_254      142082 37 +   193288 I
e caeJap4.Scaffold54       97356 20 +   258924 I
e cb4.chrX              21071600  0 - 21540570 C
e caeSp111.Scaffold630  15370902  0 - 20921866 C
e caeRem4.Crem_Contig24   380967  0 -  1162296 C

a score=91.000000
s ce10.chrX               559486 1 + 17718866 A
s caeJap4.Scaffold54       97376 1 +   258924 A
i caeJap4.Scaffold54    I 20 C 0
e caePb3.Scfld02_254      142082 37 +   193288 I
e cb4.chrX              21071600 0 - 21540570 C
e caeSp111.Scaffold630  15370902 0 - 20921866 C
e caeRem4.Crem_Contig24   380967 0 -  1162296 C

a score=910.000000
s ce10.chrX               559487 1 + 17718866 T
s cb4.chrX              21071600 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15370902 1 - 20921866 t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      142119 1 +   193288 t
i caePb3.Scfld02_254    I 37 C 0
s caeJap4.Scaffold54       97377 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   380967 0 -  1162296 C

a score=159195.000000
s ce10.chrX               559488 297 + 17718866  
s cb4.chrX              21071601 328 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   380967 302 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15370903 278 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      142120 452 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       97378 347 +   258924  
i caeJap4.Scaffold54    C 0 I 213

a score=147422.000000
s ce10.chrX               559785 406 + 17718866  
s cb4.chrX              21071929 333 - 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   381269 472 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371181 307 - 20921866  
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_254      142572 338 +   193288  
i caePb3.Scfld02_254    C 0 I 2
s caeJap4.Scaffold54       97938 294 +   258924  
i caeJap4.Scaffold54    I 213 C 0

a score=-21344.000000
s ce10.chrX               560191 124 + 17718866 TTTGCCGAAAATAACTCAAACTCGGCCTAATCCGCAAATTTTCCGTGTTGAACAAATTTCGATATGTTCTGCAAAAATTGCAGTGTATTGGTTTAAGCCACTATAAATAATGGAAAAAAGCTCC
s caeRem4.Crem_Contig24   381741  29 -  1162296 CTTGCC----------------------AAAATGTACTTTT-----------------------------------ATTGCAATGT--------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371492  12 - 20921866 ----------------------------aatcctcatttc------------------------------------------------------------------------------------
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_254      142912  10 +   193288 ------------------------------TCTGTACTCT------------------------------------------------------------------------------------
i caePb3.Scfld02_254    I 2 C 0
s caeJap4.Scaffold54       98232  33 +   258924 -------AGAGCAACTTA----------AACATGCAAATA--------------------------------CAGTGTTGCG------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21072262   7 - 21540570 I

a score=131455.000000
s ce10.chrX               560315 187 + 17718866 GAAATTTTAAACTTTCTAGATTAACATGGCATATGGATGCACAGAGTCGTGCGCAGACCTTCCATGCCTTCGTAACGGATACACCCACCCCAATAACTGCTCCATGTGCGCATGTCCCGAAGGTTTATCAGGAAGATATTGTGAACAAGTGTACCCGTCAAACGCTCAATGTGGTGGGGTTATTTTT
s cb4.chrX              21072269 186 - 21540570 gaaatacTAAA-TATTCAGATCAATATGGCATATGACTGCACAGAACATTGCCCAGACTTGCCCTGTCTGCGAAACGGATACCCACATCCTAACAACTGCTCTACTTGTGCTTGCCCGGAAGGATTATCAGGAAAATTCTGTGAGCAAGTGTATCCATCAAACGGACAATGTGGAGGAGTCattttt
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   381770 172 -  1162296 ---------------TTAGATCAATATGGCCTACGGATGTACAGAATCTTGTCCTGATCTCCCATGTCTCCGAAATGGGTACCCACATCCTAATAATTGTTCAACGTGTGCATGCCCTGAAGGATTATCGGGCAGGTTTTGTGAGCAGGTCTACCCGTCAAATTCTCAATGTGGTGGTGTGATTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371504 182 - 20921866 ----ttttcaa-atttcagatcaacaTGGCATATGGTTGTACAGAGTCGTGCCCGGATCTCCCATGTCTTCGTAACGGCTACCCTCATCCGAATAATTGTTCTACCTGCGCATGCCCGGAAGGCCTAGCAGGGAGGTTTTGTGAACAGGTCTACCCTTCAAATGCTCAGTGTGGCGGGGTTATTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      142922 176 +   193288 ----CTTTGA-------AGATTAACTTAGCTTATGGATGTACCGAATCTTGCCCTCAGCTTCCATGTCTACGCAATGGATACCCGAATCCTAATGATTGCTCCACGTGCACATGCCCAGAAGGATTGTCAGGAATGTTCTGTGAAAAAGTTGCGGTGTCAAACGCTCAATGTGGTGGCGTCATTTTt
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98265 174 +   258924 -------------TTCCAGATCAACATGGCTTACGGTTGTACAGAAAAGTGCCAAGAGCTTCCATGCCTCAGAAATGGATACCCACATCCAAATAATTGCTCAACGTGTGCTTGTCCTGATGGGTTAACAGGAAGGTTTTGTGAGCAGGTTCATCCATCTAATGCTGAGTGTGGGGGTGTTATTTTT
i caeJap4.Scaffold54    C 0 C 0

a score=1910.000000
s ce10.chrX               560502 2 + 17718866 GT
s cb4.chrX              21072455 2 - 21540570 gt
i cb4.chrX              C 0 I 41
s caeSp111.Scaffold630  15371686 2 - 20921866 GT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      143098 2 +   193288 gt
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98439 2 +   258924 GT
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=1326.000000
s ce10.chrX               560504 3 + 17718866 AAG
s caeSp111.Scaffold630  15371688 3 - 20921866 AAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      143100 3 +   193288 aag
i caePb3.Scfld02_254    C 0 I 46
s caeJap4.Scaffold54       98441 3 +   258924 GAG
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21072457 41 - 21540570 I
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=273.000000
s ce10.chrX               560507 1 + 17718866 T
s caeSp111.Scaffold630  15371691 1 - 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       98444 1 +   258924 T
i caeJap4.Scaffold54    C 0 I 38
e caePb3.Scfld02_254      143103 46 +   193288 I
e cb4.chrX              21072457 41 - 21540570 I
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=172.000000
s ce10.chrX               560508 26 + 17718866 AACATACAGTGTCACGACCATTTTAT
s caeSp111.Scaffold630  15371692 24 - 20921866 AGTATatgggtttttga--aatttat
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      143103 46 +   193288 I
e caeJap4.Scaffold54       98445 38 +   258924 I
e cb4.chrX              21072457 41 - 21540570 I
e caeRem4.Crem_Contig24   381942  0 -  1162296 C

a score=0.000000
s ce10.chrX               560534 918 + 17718866  
e caePb3.Scfld02_254      143103  46 +   193288 I
e caeJap4.Scaffold54       98445  38 +   258924 I
e cb4.chrX              21072457  41 - 21540570 I
e caeSp111.Scaffold630  15371716   0 - 20921866 C
e caeRem4.Crem_Contig24   381942   0 -  1162296 C

a score=-141.000000
s ce10.chrX               561452 27 + 17718866 TAAATGATTATTATTCCAAGTGAAATT
s caeSp111.Scaffold630  15371716 13 - 20921866 taaataat-----------GTGAA---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      143103 46 +   193288 I
e caeJap4.Scaffold54       98445 38 +   258924 I
e cb4.chrX              21072457 41 - 21540570 I
e caeRem4.Crem_Contig24   381942  0 -  1162296 C

a score=91.000000
s ce10.chrX               561479 1 + 17718866 T
s caeJap4.Scaffold54       98483 1 +   258924 T
i caeJap4.Scaffold54    I 38 C 0
e caePb3.Scfld02_254      143103 46 +   193288 I
e cb4.chrX              21072457 41 - 21540570 I
e caeSp111.Scaffold630  15371729 0 - 20921866 C
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=546.000000
s ce10.chrX               561480 1 + 17718866 T
s cb4.chrX              21072498 1 - 21540570 t
i cb4.chrX              I 41 C 0
s caeSp111.Scaffold630  15371729 1 - 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54       98484 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      143103 46 +   193288 I
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=2651.000000
s ce10.chrX               561481 5 + 17718866 TTCAG
s cb4.chrX              21072499 5 - 21540570 tttag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  15371730 5 - 20921866 TATAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      143149 5 +   193288 TTCAG
i caePb3.Scfld02_254    I 46 C 0
s caeJap4.Scaffold54       98485 5 +   258924 TACAG
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   381942 0 -  1162296 C

a score=87266.000000
s ce10.chrX               561486 97 + 17718866 GCTACAAAGGAAGTGAAGTACATCACTAGCCCAAATTACCCTGACAAATTTCCAATTGACACCGAATGCAATTGGATTATCGCAGCGCCAATCGGTA
s cb4.chrX              21072504 97 - 21540570 gccACAAAGGAAGTAAAGTACATCACAAGCCCAAACTATCCTGACAAATTTCCACTCAACACAGAATGTAATTGGATCATTGCTGCCCCAATCGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   381942 97 -  1162296 GCTACAAAAGAAGTAAAATATATCACAAGTCCCAACTACCCTGATAAGTTCCCATTGGATACTGAATGTAATTGGATTATTGCGGCTCCAATAGGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371735 97 - 20921866 GCTACCAAAGAAGTGAAATATATCAGCACTCCAAACTATCCTGATAAATTTCCAGTAAACACTGAGTGTAATTGGATCATTGCTGCGCCGATCGGTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      143154 97 +   193288 GCCACAAAAGAAGTAAAATATATTCAAACTCCAAACTATCCGGATGCGTTTCCAATAGGCACCGAATGCTACTGGATCATCGCAGCCCCAATTGGTT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98490 97 +   258924 GCTACTAAAGAAGTCAAATACATCACAAGCCCAAACTATCCCGACAAATTTCCGTTGAACGCTGAATGCAACTGGCTCATTGCAGCACCAATTGGTA
i caeJap4.Scaffold54    C 0 I 28

a score=-5456.000000
s ce10.chrX               561583 13 + 17718866 AAATATCAGTT-TT--
s cb4.chrX              21072601 16 - 21540570 ATTGTTGCACAGCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   382039 15 -  1162296 AGCAACGAATA-CTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371832 13 - 20921866 AGtgctcaatt-tt--
i caeSp111.Scaffold630  C 0 I 22
s caePb3.Scfld02_254      143251 13 +   193288 GGTGtttatgt-tt--
i caePb3.Scfld02_254    C 0 I 49
e caeJap4.Scaffold54       98587 28 +   258924 I

a score=-5662.000000
s ce10.chrX               561596 19 + 17718866 AAATT-TTAC-TACTAT-----CATT-----
s cb4.chrX              21072617 18 - 21540570 ------TAGTATAATTG-----CAAATGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   382054 22 -  1162296 ------CAAC-TAATAGGCCacctattat--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      143313 25 +   193288 agattttaac-tttttt-----cacgTACTC
i caePb3.Scfld02_254    I 49 C 0
e caeJap4.Scaffold54       98587 28 +   258924 I
e caeSp111.Scaffold630  15371845 22 - 20921866 I

a score=229817.000000
s ce10.chrX               561615 267 + 17718866 -ATATTTCAGAAGGAAGAGTGTTCATGGAATTTGAAGGAGATTTTGATTTTCTCTGCGAAGACACTTGCGACAAGGCATACGTAGAAGTTAAATATCATAGTGACAAACGTCTTACTGGAGCCAGATACTGTTGCTCGCTGCTTCCAAAAAATCGATTCATCTCTTTCAAAAATGAGATGATTATTATAATGAGAGGGTATAGATCAAGTGGAGCTGGGTTTAAAGCCAAGTTCTGGTCTAATTTGGGAGAGCCAGAAGGAGTAAGTT
s cb4.chrX              21072635 264 - 21540570 ----TTTCAGAAGGACGAGTTTTCATGGAGTTTGAGGGCGACTTTGATTTTCTTTGTGAAGACACATGTGACAAAGCATATGTAGAAGTCAAATATCATAGTGACAAACGTCTCACCGGAGCTAGATTCTGTTGTTCTCTCTTGCCCAAAAACCGATTCATCtcattcaaaaatgagatgatTATTATAATGAGAGGATACAGATCTACAGGGGCTGGCTTCAAAGCTAAGTTCTGGTCCAATCTTGGAGAACCTGAAGGggtgagat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   382076 264 -  1162296 ----tttcagaaggcAGAGTGTTCATGGAGTTCGAGGGAGACTTCGATTTCCTTTGTGAAGACACATGTGACAAAGCTTATGTGGAGGTCAAATATCATAGTGACAAGCGATTGACTGGTGCGAGGTTCTGTTGTTCTCTACTACCCAAGAACCGATttatttccttcaaaaatgaaatgattatCATAATGAGAGGGTATAGATCAAGTGGTGTTGGGTTTAAAGCAAAGTTCTGGTCGAATTTGGGAGAACCGGAAGGAGTGAGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15371867 267 - 20921866 -GTGTTTCAGAAGGCCGAGTTTTCATGGAGTTTGAAggagattttgattttctgtgTGAAGACACTTGTGACAAAGCATATGTAGAAGTTAAATATCACAGTGATAAGAGATTAACTGGAGCAAGATTCTGTTGTTCGCTACTGCCGAAAAACAGATTTATTTCGTttaagaatgaaatgattatCATTATGAGAGGATACAGATCAAGTGGTGCTGGCTTCAAGGCAAAGTTTTGGTCTAACTTAGGAGAGCCTGAAGGGGTTTGTT
i caeSp111.Scaffold630  I 22 I 7
s caePb3.Scfld02_254      143338 266 +   193288 --ATTTCCAGAAGGACGTGTTTTCATGGAATTCGAAGGTGAATTTGATTTCCTTTGCGAAGACACGTGCGATAAAGCATACGTGGAAGTCAAGTATCACAGCGATCAACGTCTCACAGGTGCTAGATTCTGCTGCTCGTTGCTTCCAAAATATAGActgatttcattcaaaaatgagatgattGTCATCATGAAAGGACACAGTTCACGAGGATCTGGATTCCGAGCAAAGTTCTGGTCGAACTTAGGAGAGCCAGAAGGAGTAagtc
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98615 268 +   258924 atattTCCAGAAGGACGCGTTTTCTTGGAGTTTGAAGACGAGTTCGATTTTCTGTGCGAAGATACATGTGACAAGGCTTACGTGGAGATAAAATATCAAAATGACAAGCGGCTCACCGGCGCACGATTCTGTTGTTCATTGCTGCCTCGGAGCCGGTTCATTTCTTTCAAAAACGAAATGATAGTTATGATGAGAGGCTTCCGATCAACGAGTAAAGGTTTCCGCGCAAAATTCTGGTCCAATCTAGGAGAACCGGAAAAGGTAAGTA
i caeJap4.Scaffold54    I 28 C 0

a score=320.000000
s ce10.chrX               561882 3 + 17718866 GTT
s cb4.chrX              21072899 1 - 21540570 --t
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24   382340 1 -  1162296 --T
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_254      143604 3 +   193288 gat
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98883 3 +   258924 ACT
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630  15372134 7 - 20921866 I

a score=546.000000
s ce10.chrX               561885 1 + 17718866 T
s caeRem4.Crem_Contig24   382343 1 -  1162296 T
i caeRem4.Crem_Contig24 I 2 I 35
s caePb3.Scfld02_254      143607 1 +   193288 t
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98886 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21072900 20 - 21540570 I
e caeSp111.Scaffold630  15372134 7 - 20921866 I

a score=273.000000
s ce10.chrX               561886 1 + 17718866 T
s caePb3.Scfld02_254      143608 1 +   193288 t
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54       98887 1 +   258924 T
i caeJap4.Scaffold54    C 0 I 378
e cb4.chrX              21072900 20 - 21540570 I
e caeSp111.Scaffold630  15372134 7 - 20921866 I
e caeRem4.Crem_Contig24   382344 35 -  1162296 I

a score=542.000000
s ce10.chrX               561887 95 + 17718866 TTCCTTAGATAGTTTAGAAAAAATTGTTGCATTAGTTGTGAATTAGGTGTGTGTTTTTGAATGC-ACTTATCAAAAAATTTTG-ATTGATTTTTTAC
s caePb3.Scfld02_254      143609 77 +   193288 ----caaaaaagttcagag-----------aTTAGCT-----CCAAGTATAATATTTTGAATACTGCTagttgaaatgttttatgTTGCTATtttac
i caePb3.Scfld02_254    C 0 I 112
e caeJap4.Scaffold54       98888 378 +   258924 I
e cb4.chrX              21072900 20 - 21540570 I
e caeSp111.Scaffold630  15372134  7 - 20921866 I
e caeRem4.Crem_Contig24   382344 35 -  1162296 I

a score=0.000000
s ce10.chrX               561982 459 + 17718866 CATGaatgtggtgtagtcgattttttattatacgaaaaattgtctgaaaaaaaacttaattttataatgaaaattcttgaaagttttgaaaattcaaaaaaagtTTTTGCTAAAGTTTGGGGTGATCTCTGACCTAAAATTAGTTatcagctttaaaatacctaattcgagttcaaaaaaaagaactaaacgtagatataagtatactcaaaattagacggtgatttcaaaaaaaaaattagtttccagccgctgcgacattgacaaattggtcaaatttcaaataattgttaatttttggccattttttgagccatcaaaacttttttttttgagaagttttcaacaattttcattataaaactcaaagttttcagtttcaagcttcaaaaagcaatgaaaaaaattcgactTTCAAAAGCTTTCAAAAAATAATTCAAATTACGCTACAATACCTTC
e caePb3.Scfld02_254      143686 112 +   193288 I
e caeJap4.Scaffold54       98888 378 +   258924 I
e cb4.chrX              21072900  20 - 21540570 I
e caeSp111.Scaffold630  15372134   7 - 20921866 I
e caeRem4.Crem_Contig24   382344  35 -  1162296 I

a score=168.000000
s ce10.chrX               562441 16 + 17718866 TCAGGAAATAGTAGTA
s caeSp111.Scaffold630  15372141 15 - 20921866 TCAAAAGTTAgtatt-
i caeSp111.Scaffold630  I 7 C 0
e caePb3.Scfld02_254      143686 112 +   193288 I
e caeJap4.Scaffold54       98888 378 +   258924 I
e cb4.chrX              21072900 20 - 21540570 I
e caeRem4.Crem_Contig24   382344 35 -  1162296 I

a score=-767.000000
s ce10.chrX               562457 14 + 17718866 ATATTAAATGTTGT---
s cb4.chrX              21072920 14 - 21540570 ---ATGTTAATTTTATT
i cb4.chrX              I 20 C 0
s caeSp111.Scaffold630  15372156 11 - 20921866 ---ttatatatttt---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      143686 112 +   193288 I
e caeJap4.Scaffold54       98888 378 +   258924 I
e caeRem4.Crem_Contig24   382344 35 -  1162296 I

a score=22236.000000
s ce10.chrX               562471 119 + 17718866 AGGTTAGCACTCCATTGCCGCCAACAACAGCTCCGCTCCCAGAAATTTCGGAAACAACACAAAAGCCAGAACCAA---CCACTGTACAATCTACAACTACATA---TACAACGGCAATTCCGCGG
s cb4.chrX              21072934 113 - 21540570 AGGTTATCACTCCAATGCCACCAACTACGGCTCCGTTGTCTGAAATAACAG---------AGGAGCCGGAGCCAGAAACTACGACAACCCTCCctccaacaac---aacaaccacCCTTCCCAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   382379 125 -  1162296 AGGTTGTCACACCAATGCCACCAACTACCGCTCCAGTacctgaaattgaagaaactaCTAAAGAACCAGAGCCAGAAACGACTATCACACTCCCAACGACAATTCAAACAACAACTCTTCCAAGA
i caeRem4.Crem_Contig24 I 35 C 0
s caeSp111.Scaffold630  15372167 122 - 20921866 agGTAATAACTCCGATGCCACCAACCACTGCTCCAGTTCCTGAAATAGTGGAAGTAACCGGAGAATTGGAACTAGAATCGACAGAAGCGCCTACTACCATATC---CACGACGACTTTCCCAAGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      143798 110 +   193288 AGGTAGTCACGGAAATGCCACCCACAACCAATACTATCTCCGAAACTATCACGTCTActagaaaacaagaagtaaTACCACCAG-------TACTCACA--------ACGACAACTCTTTTTGGA
i caePb3.Scfld02_254    I 112 C 0
e caeJap4.Scaffold54       98888 378 +   258924 I

a score=43025.000000
s ce10.chrX               562590 287 + 17718866 AGAACCGCAAAAAAACAGTTCTTCACAAGAAAACCCATCACAATCCCATTGACACCTCTAACTTCCTCGTCAACT------------ACAACGGAGTCTACCACTGTATCTTCT---ACG------ACACAATCAACTGTAAGGGGAAAAACGTGATTCGGCTTACAATCAACATTTTTAGACCTGGTTGCCAACTGAACCATCATTCGCTACCGGCGAAACGGAAATCACAACTGCAAGCCCCACAATCACGTTATTCCCAAGTTTATCAACTATGTTAGCTTCCAAGT---TTTTTTGTTGAGAAATTG
s cb4.chrX              21073047 234 - 21540570 AGAGTCTCTAAGAAACACTTCTTCACAAGAAAACCTCTAAC-------------------------TCCTGTGCca-----------acaactaccccaacacctacaacaact---aca------acggaaacaacgacaacaTTTACCACGGAGTCC-----ACAACGACCACTTCC-----------CCAACGCAACCGACATTTTTGACTGGAGAAACTGAAATCACAACTGCTAGCACGGTTGCAACGTTCTTCCCAAAGTTATCCACCATGTAAGTTA----------------TTTTAAATATT
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig24   382504 256 -  1162296 AGGACATCCAAGAAGCAGTTCTTCACACGGAAACCGATCACTGTCCCATTGATCCCACCA------TCTTTTGTCACAGTACCGATTACTACTACCACAACAGTTGCCACAACTGTAACA------ACGGAATCAACAACTGTA--------------------ACGACTACAGCTGCT-----------CCAACACAACCAACATTTGTGACAGGAGAGACTGATATAACTACTCCAAGCACAGCGGCTACTCTCTTCCCAACTTTGTCAACAATGTgagtaaa------------aatttcaaaaaatg
i caeRem4.Crem_Contig24 C 0 I 215
s caeSp111.Scaffold630  15372289 255 - 20921866 agaacttccaaaaaacatttcttcaCTAGAAAACCGATCACCGTACCTTTCACCCCACCAACTACTCcaactgctcca---------acaacaacggttactacaacgcagtct---acaaccactacacaaacaacaactaca--------------------actatctcaactact-----------ccaactcaacccactTTTGTGACaggagaaacagaaataacGACAGCAGGCACTGCAGCCACACTCTTCCCAACGCTTTCTACACTGTAAGTTT-------------TTGCTGaagaaatc
i caeSp111.Scaffold630  C 0 I 22
s caePb3.Scfld02_254      143908 223 +   193288 AGACTTgctaagaaaatgtttttcacaaGAAAACCAACAACATT---------CCCTACAACGACGTCGCCTGCT------------ACAACTACTGTGACTCCTGTTCCATCT---ACA------ACAGAGAAAGTAACCACA--------------------A--------------------------CAACTCCGTCTTCATTTATTACTGGAGAGACAGCATTAACAACAGAAAGTACTACAACAgaagctttttcaattttgccaACTATGTAAGTTTA------------TCGTTTGAACAGTG
i caePb3.Scfld02_254    C 0 I 55
s caeJap4.Scaffold54       99266 235 +   258924 AGAACAACGAAAAAACAATTCTTTACAAGAAGACCTTTGAAG------------------------CCGACCACT------------TCTACTACTGTAACTTcaccaccgacc---aca------acaaccacaacatcccca--------------------acaaccacaacaaca-----------TCTACTCAACCGTCGTTTGTTACTGGTGAACCGAGCATTTCGACTGATAGCCCACCTATAAAACTGTTCCCCTTTTTAACAACAGAGTTAGTTCCTATGTTAATCATTTCCTCAAATATTA
i caeJap4.Scaffold54    I 378 C 0

a score=53866.000000
s ce10.chrX               562877  92 + 17718866 TTTTT--TTCCAGACTTCCTCCTATCAATTCGTTAGCTGGAGTTCTACCATCTACACAAGCTCCAGATATTATCAATAGTG--------------------TATTAGGTACGGC
s cb4.chrX              21073295  88 - 21540570 TGGTT--CTACAGACTTCCACCAGTCAATCCTTTAGCTGGAGTGTTACCATCTACCCAAGCTCCTGATATTATTAACAGTG--------------------TCTTAGGTA----
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig24   382975  88 -  1162296 aaatt--ttccagaattccacCAATCAACCCACTTGTTGGAGTTCTCCCATCTACACAAGCCCCAGATATTATCAATAGTG--------------------TTTTGGGTA----
i caeRem4.Crem_Contig24 I 215 C 0
s caeSp111.Scaffold630  15372566  89 - 20921866 caatt--tttcagaat---tccaatTAACCCACTCGCCGGTGTTCTGCCTTCCACACAAGCCCCAGATATTATTAATAGTG--------------------TTTTAGGTAGACC
i caeSp111.Scaffold630  I 22 C 0
s caePb3.Scfld02_254      144186 114 +   193288 CATGTTATTTCAGACTACCTCCAATCAACTCACTTGTGGGAGTGTTGCCTTCAACGCAAGCCCCTGATATTATCAACAGTGTACTCGGTCAGTTCTAAGAATTTCAGGCAAATC
i caePb3.Scfld02_254    I 55 C 0
s caeJap4.Scaffold54       99501  88 +   258924 ------CTTTCAGACACCCTCCAATAAACCCACTGCCTGGTATTTTGCCATCTACACAATCGCCGGACATTATCAATAGTA--------------------TTTTGGGTAAGAC
i caeJap4.Scaffold54    C 0 I 97

a score=-8777.000000
s ce10.chrX               562969 51 + 17718866 GGCTTTATTCAGACAAAGTTTATT--ATTGGGTCTAGCAGTCACTATGAACTT
s cb4.chrX              21073383 15 - 21540570 ---------------AGGTTATTT-----------------------CCATtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383063 38 -  1162296 ---------------TGTTTTGTTGTGAAAAGTTCAATAATCACCCACCAATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15372655 16 - 20921866 TACt--------acaaagtttttt-----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      144300 21 +   193288 ---------------GAGTTCTTC-----------------CACCATCTACTT
i caePb3.Scfld02_254    C 0 I 101
e caeJap4.Scaffold54       99589 97 +   258924 I

a score=-22151.000000
s ce10.chrX               563020 153 + 17718866 ACGAGTGTTTGTGACCGTGTATCTACAGTTACGGTAAGAGTTATCCAGTAAATACTATAAATTGTAGGAACGGATCCTGATTCTATCTGTAGAGACACAATTAAGAAACAGAAACAAAATGTGTAAATTATGGCTAAATTATGGTGAAGCAAA
s cb4.chrX              21073398  19 - 21540570 ----------------------------------taa------------aatttgcaaaaatcgt----------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383101  69 -  1162296 -------TTT-------CAAGTTTTCGGT-----TAA------------ACATAGTCAAAATAGTG----------------TTAGCTTT--------------------GATTTAAAA----------ATGCCCtgatt-------tgtaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15372671  19 - 20921866 -------------------tgttttc-------------------------atactcacaatt------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      144321 101 +   193288 I
e caeJap4.Scaffold54       99589  97 +   258924 I

a score=-1014.000000
s ce10.chrX               563173 3 + 17718866 --TGT
s cb4.chrX              21073417 1 - 21540570 --t--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383170 1 -  1162296 --t--
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54       99686 3 +   258924 TAT--
i caeJap4.Scaffold54    I 97 C 0
e caePb3.Scfld02_254      144321 101 +   193288 I
e caeSp111.Scaffold630  15372690 0 - 20921866 C

a score=251500.000000
s ce10.chrX               563176 458 + 17718866 TTTCAGAATGCGGCTGTGGAGCTTGGTCTGAATGGCAAGGTGAATGCTCCCAGCAGTGTGGCGGATGCGGTCATCGACTGAGGAAGCGAGAGTGCAAAAAAGAAGCTTGCAGGTTTGGAAA--TTAAATGTCACATTTA-TGTCTATCAATA-ACATT----TTGTAGAAAAGAAGAAAAACGCCCATGCAACTTCTCAGCATGCCCCGACGGCACTAACTTCCTAATCAACAATGCTGAATTCCATATTCTTTGGAGAGGGTGTTGTGTTGGGTTGTTCAGGT-----ATTATATTTTCAAT----AAACAAATTTCAAAATAGCTTA--------TCTTAGATCCGGAGATCAATGCTCCGCCCTGGAAACTGAATCGAACCCATTCTTCAAAATTATCAACAGCCTGCTGAACATTCAAGATGCTAAGAACAATGATACGTTAATAGCAAAAAGAATGATGCGAGGAGAACACTAATGTA-------
s cb4.chrX              21073418 457 - 21540570 ttttagaATGCGGCTGTGGTTCATGGGCAGAATGGCATGGGGAATGCTCTCAACAATGTGGTGGTTGTGGACACAGATTAAGAAAGAGAGAATGCAAAAAGCAGGCTTGTCGGTAAG------TGAGAATCAGTTTGGATTGAAGTATATCAGGtttt----tttaagaaaagaggaaaaacgaCCTTGCAATTTCTCAGCATGCCCAGATGGTACTAACTTCCTTATCAACAACTCTGAATTCCATATTCTTTGGAGAGGATGTTGTGTGGGATTGTTCAGGT-----TGAGAAATATC---------CTAATGTTCAAAGCTGACAGagtttttatttcagatcTGGAGACCAATGTTCTGCACTGGAGACTGAGTCGaatccgtttttcaaaataatcaataGTCTTCTAAATATTCAAGACGTGAAAAACAACGAAACTTTAATAGAAAAACGGATGATGAGAGGGGAACATTAAAA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383171 412 -  1162296 tttcagaatgcggTTGTGGTGCTTGGTCTGAATGGCAAGGGGAGTGCTCACAACAATGTGGTGGATGTGGACACCGATTGAGAAAGCGAGAGTGCAAAAAAGAGGCTTGCAGGTAAGC--AGCTGCATGATAtcatgga-aaaaatatttca-tttga----tttaagaaaagaagaaaaacgaccCTGCAATTTTTCTGCGTGCCCAGACGGCACCAACTTCCTTATTAATAACTCTGAATTCCATATTCTCTGGAGAGGATGTTGTGTGGGACT-------------------------------------------------------------CTTCAGATCTGGTGATCAATGTTCTGCACTAGAAACAGAGTCAAATCCATTCTTCAAAATAATCAACAGCCTACTCAACATCCAAGACgccaagaaaaatgagacacTAATTGCAAAACGGATGATGAGAGGTGAACattaata---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15372690 414 - 20921866 --tcagaatgtggTTGCGGAGCTTGGTCGGAATGGCAAGGAGACTGTTCTCAAGAGTGTGGTGGATGTGGACATAGAATAAGAAAGCGTGAATGTAAAAAAGAGGCCTGCAGGTACCCAAAttctaatattttcaataa-aataatatGATA-ATGGT----TTTCaggaaagaggaaaaacgaCCAtgcaatttttcagcttGCCCTGATGGCACCAATTTCTTAATAAATAACGCagaatttcatattctttgGAGAGGATGCTGTGTTGGGTTA-------------------------------------------------------------TTCAGATCTGGCGACCAGTGTTCCGCTCTGGAAACAGAatcaaatccattttttaaaataattaacAGCCTCCTGAATATACAGGATGCCAAGAAGAACGAGACACTGATTGCAAAACGTTTGATGCGCGGGGAACACTAATCTA-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      144422 455 +   193288 tttcagaatgtggTTGTTCTGCTTGGGCTGAATATCAAGGGGAGTGCTCACAACAATGTGGTGGGTGTGGTCACAGAACAAGAACAagagaatgcaaaaaagaagcATGCAGGTAGTTATAGCCGCA-------AATGA-TATGacataaga-aaaatgaaacttcagGAAAGTGGAAAAACGACCATGTGAATTCAACGCGTGCCCAGAAGGAACGAACTTCCTCATAAATAACTCCGAGTTTCACATTTTATGGAAAGGATGTTGCGTTGGATTGTTTAGGT-----ATCTAAATGC--------------TATCCAATACCGCCTAACCGTTGTTTTTAGGTCTGGCGAGCAATGTTCTCCTTTGGAAACGGAATCCAATCCATTTCTAAAGCTTATCAGTAACCTTTTAAACATTAATGATGACAAACGGAACGAAACACTAATATCAAGACGCCTTGGTCGAGGAGAACATTAATATA-------
i caePb3.Scfld02_254    I 101 I 404
s caeJap4.Scaffold54       99689 477 +   258924 TTACAGAATGTGGATGTGAACCTTGGTCAGAATGGCAAGGAGAATGCTCACAACAGTGTGGTGGTTGTGGTCATCGTAAACGACAGCGTGAATGCAAAAAGGAGACATGCAGGTTA-------AAAATAATCTGATTTT-GAAGTTCTAAAG-ACTAT----TTTTAGAAAAGAGGAAAAGCGTCCGTGCAACTTTGGAGCATGTCCTGAAGGGACAAACTTTTTGATCAATAATTCCGAATTTCATATTTTGTGGCGTGGATGCTGTGTTGGATTGTTTAGGTGAGCATGCTAAACATACACtcaaataaaaagaaaaaaaatgcactttaATTGTTTACAGATCTGGAAATGAATGCACTGCACTGGAAACCGAAACTAATCcgtttttcaaaatcatcAACAGTCTGCTTAACATTCAAGACGAGAAAAACAATGCCACGTTGATAGAAAGACGGAGAAATCGCGGAGAGCACTAAACTAAACTATA
i caeJap4.Scaffold54    C 0 C 0

a score=-20155.000000
s ce10.chrX               563634 88 + 17718866 TTTATTTGTTATAATGTCAACTATGTATATGTGTTATAATTTGTC---------AGAAACTCTAAATAAAGTATTCA-----AATTTTTAAAAAGTAAGTTT
s cb4.chrX              21073875 29 - 21540570 -----TGAATA-----------ACTTATATTCTTAACAATT------------------------ATGT---------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383583 30 -  1162296 -----ttaaca----------tatttattgttataatcatt------------------------atgt---------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630  15373104 67 - 20921866 -ATATTTATTATG-----TATTATTTGTATTATGAAGAATT---------------------TAAATATGATAAATA-----AA---TGAACAAGTAATTTT
i caeSp111.Scaffold630  C 0 n 0
s caeJap4.Scaffold54      100166 93 +   258924 ATTATTTgtca------actttttttatttgtattatAATGtgttatttccaaaaaaaattaacaatgcAGCTATAACTTATAATTGCCGAAtagtaac---
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=-6317.000000
s ce10.chrX               563722 80 + 17718866 AAGAAACCAACAAATTTATTCGTATTATTATA-------ATGCAGGG-----AAAAA-------------GGAATTAAGATCATTATCAAAAATAT----ATGATTATG
s cb4.chrX              21073904 54 - 21540570 --------------ATTATTTGTATTATAATG--------------------CACAA-------------GAAATAAAGATTGT----AATATTAA----GTGATTATG
i cb4.chrX              C 0 I 226
s caeRem4.Crem_Contig24   383613 92 -  1162296 --------------attatttgtattataaTGCACAGAAATGAAAGATCATCAACAAATTAAGTGATTATGAAATAAGAATTAT---CAACATTTATGCTttggttttg
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      100259 64 +   258924 aaaaaataaacgg-AAAATTTGTCCAATCTTT-------ATGCTTGAT----GAAAT-------------GAAAAGATATATGT---TAAAA-----------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630  15373171  0 - 20921866 I

a score=-1370.000000
s ce10.chrX               563802 23 + 17718866 CAGGTCATCAAGACATTACAACC
s caeRem4.Crem_Contig24   383705 17 -  1162296 aacttttgtgaGAAACT------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      100323 17 +   258924 TATGTTAACGAATTACC------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21073958 226 - 21540570 I
e caeSp111.Scaffold630  15373171  0 - 20921866 I

a score=60.000000
s ce10.chrX               563825 2 + 17718866 AA
s caeJap4.Scaffold54      100340 2 +   258924 AG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21073958 226 - 21540570 I
e caeSp111.Scaffold630  15373171 0 - 20921866 I
e caeRem4.Crem_Contig24   383722 0 -  1162296 C

a score=7688.000000
s ce10.chrX               563827 13 + 17718866 TTAAACAACATTG
s cb4.chrX              21074184 13 - 21540570 TTAAACAACATTT
i cb4.chrX              I 226 C 0
s caeRem4.Crem_Contig24   383722 12 -  1162296 -CAAACAACATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5569143 13 + 20921866 TTAGACCACATTA
i caeSp111.Scaffold630  I 35902 C 0
s caeJap4.Scaffold54      100342 13 +   258924 TTAAACTACATTG
i caeJap4.Scaffold54    C 0 I 85
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=34290.000000
s ce10.chrX               563840 91 + 17718866 GCATCTTTTGCCATTGAGTAGAAAATTCCATCCGGGTTTGCGAGAAGGTTCTTTGGTGAATCGAATTCCGCAACGCGTCCTTTGTCCAGTA
s cb4.chrX              21074197 91 - 21540570 GCATCCTTTGCCATCGAGTAGAATATTCCTTCCTGGTTTGCGAGGAGGTTTTTAGGAGTGTCGAATTCTGCGACGCGTCCTTTGTCCAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   383734 91 -  1162296 GCATCTTTGGCCATTGAGTAGAAAATTCCATCATGGTTTGCAAGAAGGTTCTTCGGTGAATCAAACTCCGCCACACGTCCTTTATCGAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5569156 91 + 20921866 GCATCTTTTGCCATTGAATAGAATATTCCGTCTGGATTTGAAAGAAGCTGTTTTGGAGAATCGAATTCGGCCACTCGTCCTTTGTCAAGCA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      100355 85 +   258924 I

a score=5282.000000
s ce10.chrX               563931 21 + 17718866 ------CCAAAAGACGATCACTGTCCA
s cb4.chrX              21074288 21 - 21540570 ------CAAGCAAACGGTCACTATCCA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   383825 21 -  1162296 ------CTAGCAGACGATCGCTGTCAA
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold630   5569247 21 + 20921866 ------CAAGAAGTCGATCGCTGTCCA
i caeSp111.Scaffold630  C 0 I 33
s caeJap4.Scaffold54      100440 15 +   258924 CCAAAACAAGAAGAC------------
i caeJap4.Scaffold54    I 85 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=0.000000
s ce10.chrX               563952 6 + 17718866 TCACCT
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      100455 0 +   258924 C
e cb4.chrX              21074309 3 - 21540570 I
e caeSp111.Scaffold630   5569268 33 + 20921866 I
e caeRem4.Crem_Contig24   383846 6 -  1162296 I

a score=-198.000000
s ce10.chrX               563958 88 + 17718866 TAAAATTTTCAATCATACAAGAGCGCTATATTTTTCTAAGTATATGACAGTTCACATGTTCAGTGGTACCAAAAATTCAAAAAAAGAG
s caeJap4.Scaffold54      100455 36 +   258924 --------------------GATCGCT------------GTCCATGac--------------------cttaaaattaaaaaaaaaag
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21074309  3 - 21540570 I
e caeSp111.Scaffold630   5569268 33 + 20921866 I
e caeRem4.Crem_Contig24   383846  6 -  1162296 I

a score=0.000000
s ce10.chrX               564046 190 + 17718866 TTCAAATGTCCCAATTGTTCCTTCCAAATTGAAAAGAATTGATTAAAAAACGTTTTTTTAGGCTAACTAGAACTATTCCTGAGCCCCAGAATGTTTAAAAAAATTCTTGTAAACTACTTAAAAGGTAAAGGTGAAAGTTTTAAAACCTCCTGCGGGCAAGAGATTTTTCAGGGTTACTGGTGGCGTTTAT
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      100491   0 +   258924 C
e cb4.chrX              21074309   3 - 21540570 I
e caeSp111.Scaffold630   5569268  33 + 20921866 I
e caeRem4.Crem_Contig24   383846   6 -  1162296 I

a score=-2154.000000
s ce10.chrX               564236 131 + 17718866 ATCTCTTCTAGTCTTAATTTAAGACGTACCGGGACTAGCGGTATGGCCAATTACCTTTCGCGAACCAAAGTCACTACCCACTTTCCGATCCGGTGGTACACCACTACCACTTAGACACCCGTGCCTCATCC
s caeJap4.Scaffold54      100491  44 +   258924 attttatctA---------------------------------------------TTTCGAGAAACGA-GACACTTCGCACCA------Ctggtgg-----------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21074309   3 - 21540570 I
e caeSp111.Scaffold630   5569268  33 + 20921866 I
e caeRem4.Crem_Contig24   383846   6 -  1162296 I

a score=1031.000000
s ce10.chrX               564367 8 + 17718866 AAAACGCA
s caeRem4.Crem_Contig24   383852 8 -  1162296 AAAATGCA
i caeRem4.Crem_Contig24 I 6 I 12
s caeJap4.Scaffold54      100535 6 +   258924 --agcgcg
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21074309 3 - 21540570 I
e caeSp111.Scaffold630   5569268 33 + 20921866 I

a score=-896.000000
s ce10.chrX               564375 23 + 17718866 -AAAATGTAAATGGTGACG-ACTTA
s caeRem4.Crem_Contig24   383872 21 -  1162296 -aaaataagaatag-gATG--CCTA
i caeRem4.Crem_Contig24 I 12 C 0
s caeSp111.Scaffold630   5569301 18 + 20921866 -aaaatagaaattg-aat-----ta
i caeSp111.Scaffold630  I 33 C 0
s caeJap4.Scaffold54      100541 24 +   258924 aaatacATAGACAG-TTTGAATTTA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21074309  3 - 21540570 I

a score=117186.000000
s ce10.chrX               564398 185 + 17718866 CAGTGTTCAGACGATGTGCAATTGTTAGAACAGTACATTCCTTGAACTGCTCACGAATTGTTTTTTGAATGAGACTATCCGTCTCCACATCAACCGCAGCGGCTGCCTCATCAAGCACCAGTACTTTTGTTTTTCTGAGCAGTGCGCGCGCCAAACATATCAGCTGCCGTTGGCCAACACTGAAA
s cb4.chrX              21074312 185 - 21540570 CAGTATTCAAACGATGAGCAATAGTCAGCACTGTACATTCTTTGAACTGCTCTCGTATCGTTTTTTGGATAAGACTATCAGTCTCGACGTCGACTGCAGCGGCGGCTTCATCCAGAACAAgaacttttgtttttctcaaaagagcACGAGCCAAACAAATAAGTTGTCGTTGACCAACACTGAAT
i cb4.chrX              I 3 I 16
s caeRem4.Crem_Contig24   383893 185 -  1162296 CCGTATTCAAACGATGGGCAATTGTGAGCACTGTACATTCTTTGAATTGTTCTCTGATTGTTTTTTGGATAAGACTATCCGTCTCCACATCAACTGCAGCAGCGGCCTCATCAAGAACCAacacttttgtttttcgaagGAGAGCACGAGCCAAACAGATGAGTTGTCGTTGTCCAACACTGAAA
i caeRem4.Crem_Contig24 C 0 I 384
s caeSp111.Scaffold630   5569319 185 + 20921866 cCGTGTTCAAACGATGAGCAATTGTGAGAACTGTACATTCTTTGAATTGTTCTCTGATTGTCTTTTGAATAAGACTATCAGTTTCCACGTCAACGGCAGCAGCAGCCTCATCCAAAACCAACACTTTGGTTTTTCGGAGAAGTGCGCGAGCCAGGCATATCAATTGACGTTGTCCGACActgaaa
i caeSp111.Scaffold630  C 0 I 8
s caeJap4.Scaffold54      100565 185 +   258924 CCGTGTTTAGCCTGTGAGCAATTGTCAGAACGGTGCATTCTTTAAACTGctcttttattgttttctgAAGAAGACTATCAGTTTCAACGTCCACTGCAGCGGCAGCTTCATCAAGAACGAGCACTCTTGTTTTTCTGAGCAGCGCTCGCGCCAAGCAGATCAGCTGGCGTTGTCCAAcactaaaa
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=42360.000000
s ce10.chrX               564583 150 + 17718866 --------TTCAATTGAAATTT----------TTGAGATTTTGAACCTGCAAACCTCAAATTTTCACCACCTTCTGAAATTTTGTGTTCGAGACCGTCTTGTAAAGATTTCACAAATGGCTTTAAATGAGCATTTTCTAAAGCTTCCCACACTTGTGAATCGCCTGAA-
s cb4.chrX              21074513 141 - 21540570 ---------TTAACGtagat------------ttagaattttcgt------tACCTCAGATTTTCTCCTCCTTCAGAAATGTGATGTTGGAGTTTGTCGTCTAACGATGACACAAAATCCTCTAAGTGCGCATTTCGTAGTGCTTCCCACACTTGAGAATCACCTAAA-
i cb4.chrX              I 16 I 25
s caeRem4.Crem_Contig24   384462 129 -  1162296 ---------------------------------CAAGATTCCACT------CACCTCAAGTTTTCTCCACCTTCAGATATGTGATGTTGAAGTCCAAGTTCCAAAGATTTCACGAACGGCTCCAAATGGGCGTTTCTGAGAGACTCCCACACTTGTGAATCACCTGAA-
i caeRem4.Crem_Contig24 I 384 I 3
s caeSp111.Scaffold630   5569512 146 + 20921866 --------tttgatgtgAATGC----------TTAAGTTTTTTAT----CGCACCTCAAATTTTCTCCTCCCTCGGAAATATGATGAGCTAGACCATCTTGCAACGATCTTACAAATGATTCTAAATGCGCGTTTTTAAGTGCTTCCCACACTTGAGCGTCAcctgaa-
i caeSp111.Scaffold630  I 8 I 1
s caeJap4.Scaffold54      100750 163 +   258924 aataaaaactccgTGCAAATTTAAGAAATACAGTAATATATACAG------CACCTCAAATTTTCTCCTCCTTCTGTTACTTGGTGAGAGAGACCTTCCTGAAGAGATCTAACAAATGATTCCAAATGAGCGTTTCGCAACGCTTCCCAAATTTGATCATCGCCTAGGA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=-6362.000000
s ce10.chrX               564733 32 + 17718866 -TTAA---ATTTTTTATTGTGCTTTT-GAACAACGG--T
s caeRem4.Crem_Contig24   384594 28 -  1162296 -TGAC---ATTTAGAA---cgatttg-gaaaaataa---
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold630   5569659 28 + 20921866 -taaa---actttGC------ATTTGCGAAAAATGCGG-
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold54      100913 29 +   258924 ATAAACGGATTATCTA-----TTTTCCCAACAAC-----
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21074654 25 - 21540570 I

a score=392766.000000
s ce10.chrX               564765 907 + 17718866  
s cb4.chrX              21074679 942 - 21540570  
i cb4.chrX              I 25 I 31
s caeRem4.Crem_Contig24   384622 990 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 31
s caeSp111.Scaffold630   5569687 904 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold54      100942 947 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=-460.000000
s ce10.chrX               565672 1 + 17718866 -A
s caeJap4.Scaffold54      101889 1 +   258924 T-
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21075621 31 - 21540570 I
e caeSp111.Scaffold630   5570591 1 + 20921866 I
e caeRem4.Crem_Contig24   385612 31 -  1162296 I

a score=302.000000
s ce10.chrX               565673 2 + 17718866 AA
s caeSp111.Scaffold630   5570592 2 + 20921866 ag
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold54      101890 2 +   258924 AA
i caeJap4.Scaffold54    C 0 I 880
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21075621 31 - 21540570 I
e caeRem4.Crem_Contig24   385612 31 -  1162296 I

a score=216.000000
s ce10.chrX               565675 11 + 17718866 ACTATGTCCTT
s caeSp111.Scaffold630   5570594 11 + 20921866 tttttgttttt
i caeSp111.Scaffold630  C 0 I 13
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      101892 880 +   258924 I
e cb4.chrX              21075621 31 - 21540570 I
e caeRem4.Crem_Contig24   385612 31 -  1162296 I

a score=0.000000
s ce10.chrX               565686 525 + 17718866  
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      101892 880 +   258924 I
e cb4.chrX              21075621  31 - 21540570 I
e caeSp111.Scaffold630   5570605  13 + 20921866 I
e caeRem4.Crem_Contig24   385612  31 -  1162296 I

a score=1159.000000
s ce10.chrX               566211 7 + 17718866 AAAACTA
s cb4.chrX              21075652 7 - 21540570 aaaacgC
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig24   385643 7 -  1162296 aaagctc
i caeRem4.Crem_Contig24 I 31 C 0
s caeSp111.Scaffold630   5570618 7 + 20921866 AAGTCTT
i caeSp111.Scaffold630  I 13 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      101892 880 +   258924 I

a score=69136.000000
s ce10.chrX               566218 165 + 17718866 ACCAGCACAATAAAATAAATGACTGAAAGAATCGCAAAAGCTATTCCAGCCCACGGAGTTGCCCACATAATCACTACAAGTGTGGCGACTACATTGAAAATAGTCATACTCATGTGACGGATTACATCTGGAAGAGTTCGGTCAATTGCTTCAATGTCCTGCAAT
s cb4.chrX              21075659 165 - 21540570 ACTAGGATGAGGTAGTATACGACTGCCAAGAACGCAAATATTAATCCAGCCCATGGAGTGGTCCACATAATGACGACGAGAGTAGAGATAACGCTGAAGACGGTCATAACCATATGACGGAGAACGTCAGGTAATGTGCGATCAATCGCTTCGATATCCTGAAAT
i cb4.chrX              C 0 I 2547
s caeRem4.Crem_Contig24   385650 160 -  1162296 aCCAAAACATAGAAATAAATTACAGCCAGAATAGAGAAGACAATTCCAGCGAATGGTGTCGCCCACATAATCACAACAAGTGTGGAGATCACACTGAATATAGTCATAACCATATGACGGATGACATCAGGGAGAGTGCGATCAACTGCTTCGATATcct-----
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold630   5570625 157 + 20921866 ACCAGAACAAAGAAGTAAATGACAGAAAGAATAGCAAAAGCTAATCCAGCCCATGGAGTAGCCCAAACAATTACAACCAAGGTGGAAACAACATTGAAAATAGTCATAACCATATGACGGATAACATCAGGAAGTGTACGATCAACTGCTTCAATGT--------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      102772 162 +   258924 ACCAGGACAACAAAGTAGACGAAGCCGAGTGCAGCGAACGCAAATCCGGCCCATGGTGTCGCCCAGATAACAACAACGACAGTTGAAATGACGTTGAAGATGGTCATCACCATGGCTCGAAATGAGTGAGGAAGGGTTTGGTCGACAGCTTCAATATCCTGT---
i caeJap4.Scaffold54    I 880 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=251.000000
s ce10.chrX               566383 4 + 17718866 ACAA
s caeJap4.Scaffold54      102934 4 +   258924 GCAA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21075824 2547 - 21540570 I
e caeSp111.Scaffold630   5570782 0 + 20921866 C
e caeRem4.Crem_Contig24   385810 3 -  1162296 I

a score=934.000000
s ce10.chrX               566387 7 + 17718866 AAAATGA
s cb4.chrX              21078371 7 - 21540570 aaaataa
i cb4.chrX              I 2547 C 0
s caeRem4.Crem_Contig24   385813 3 -  1162296 ----aaa
i caeRem4.Crem_Contig24 I 3 C 0
s caeJap4.Scaffold54      102938 7 +   258924 AAATTAA
i caeJap4.Scaffold54    C 0 I 2222
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630   5570782 0 + 20921866 C

a score=-2067.000000
s ce10.chrX               566394 24 + 17718866 AAAGTGAT-----------------AAACAACATATTATCC
s cb4.chrX              21078378 40 - 21540570 aaaattttgaaattagccCTTTCTTATATGAAAGATTAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   385816 32 -  1162296 acaatttt--------ccatAGCCAATTTCACGCATTTTC-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      102945 2222 +   258924 I
e caeSp111.Scaffold630   5570782  0 + 20921866 C

a score=76001.000000
s ce10.chrX               566418 167 + 17718866 AATTACTTTTCCGATTCGATTCAATATTCTTCCAATTGGTGTAACATCAAAGAATGCCATCGGTGATCTCATAATATTTCCAAGAAGTCCTGCATGAAGAATTCGGCTAGCTCTGAGTACTCCAATAGTCAAAATAATTGAGGCTATTAAAACCACAAATGCTGAAA
s cb4.chrX              21078418 165 - 21540570 --TTGCTTTTCCCAGTCGATTCAGCATTCTACCAATTGGAGTAACATCGAAAAATGCCATTGGTGATTTCATAATGTTCCCAAGCAGTTCGGCGTGTAGGCGTTTACTGGCACGGACAATTCCGAAAGTGAGAATGATTGAAGAAACACAAACAACCGATGCTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   385848 165 -  1162296 --TTACCTTTCCAAATCTGTTCAAGATTCTACCAATAGGTGTGACATCGAAGAATGCCATTGGAGACGTCATAATGTTTCTGAGGAGCCCAGCATGTAATAGTCTACTAGCTCGAACCATTCCAAGCGCCAAAATGATAGAAGCGACGCATACAACcaatgctgaaa
i caeRem4.Crem_Contig24 C 0 I 26
s caeSp111.Scaffold630   5570782 162 + 20921866 -----CTTTCCCAAGTCGATTCAATATTCTTCCAATTGGAGTGACATCAAAGAATGCCATGGGAGATCTCATGATGTTTCCAAGGAGTCCTGCGTGAAGGATTCGGCTAGCACGGACCATTCCCAGAGCTAATATAATAGAGGCGACGCATACAACAGCAGctgaaa
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      105167 167 +   258924 aaataccTTTCCAAAACGATTCAAAATCCTTCCCAGTGGTGTGACATCAAAAAATGCCATAGGCGATTTAACAATATTGCTAAGCATACTAGAATGAAGCAACCTGCTTGCTCGGACCATGCCAAGTGCCATTATCACAGAAGCAGCGCATACAGATGTGGCTAAAA
i caeJap4.Scaffold54    I 2222 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=-334.000000
s ce10.chrX               566585 8 + 17718866 TATGTCTC
s cb4.chrX              21078583 6 - 21540570 --tatttt
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630   5570944 8 + 20921866 actgtttc
i caeSp111.Scaffold630  C 0 I 18
s caeJap4.Scaffold54      105334 7 +   258924 ATTGTGT-
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeRem4.Crem_Contig24   386013 26 -  1162296 I

a score=-766.000000
s ce10.chrX               566593 16 + 17718866 GTGACTTTTGACTTAC--
s cb4.chrX              21078591 16 - 21540570 ttcatttttcagaaat--
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold54      105341 16 +   258924 --GTttctttaaatattt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630   5570952 18 + 20921866 I
e caeRem4.Crem_Contig24   386013 26 -  1162296 I

a score=238.000000
s ce10.chrX               566609 8 + 17718866 GAATTTTA
s cb4.chrX              21078607 6 - 21540570 --gatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   386039 8 -  1162296 gaagttta
i caeRem4.Crem_Contig24 I 26 C 0
s caeJap4.Scaffold54      105357 8 +   258924 aaaaaata
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630   5570952 18 + 20921866 I

a score=159041.000000
s ce10.chrX               566617 502 + 17718866  
s cb4.chrX              21078613 520 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   386047 520 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5570970 520 + 20921866  
i caeSp111.Scaffold630  I 18 I 2083
s caeJap4.Scaffold54      105365 513 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=546.000000
s ce10.chrX               567119 1 + 17718866 A
s cb4.chrX              21079133 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   386567 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 47
s caeJap4.Scaffold54      105878 1 +   258924 a
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630   5571490 2083 + 20921866 I

a score=273.000000
s ce10.chrX               567120 1 + 17718866 A
s cb4.chrX              21079134 1 - 21540570 a
i cb4.chrX              C 0 I 33
s caeJap4.Scaffold54      105879 1 +   258924 a
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeSp111.Scaffold630   5571490 2083 + 20921866 I
e caeRem4.Crem_Contig24   386568 47 -  1162296 I

a score=423.000000
s ce10.chrX               567121 7 + 17718866 TTAATAT
s caeJap4.Scaffold54      105880 7 +   258924 ttattat
i caeJap4.Scaffold54    C 0 I 1407
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21079135 33 - 21540570 I
e caeSp111.Scaffold630   5571490 2083 + 20921866 I
e caeRem4.Crem_Contig24   386568 47 -  1162296 I

a score=0.000000
s ce10.chrX               567128 614 + 17718866  
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      105887 1407 +   258924 I
e cb4.chrX              21079135  33 - 21540570 I
e caeSp111.Scaffold630   5571490 2083 + 20921866 I
e caeRem4.Crem_Contig24   386568  47 -  1162296 I

a score=178.000000
s ce10.chrX               567742 11 + 17718866 CGACTACCCCC
s caeSp111.Scaffold630   5573573 11 + 20921866 CGTCGACATTC
i caeSp111.Scaffold630  I 2083 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      105887 1407 +   258924 I
e cb4.chrX              21079135 33 - 21540570 I
e caeRem4.Crem_Contig24   386568 47 -  1162296 I

a score=-1780.000000
s ce10.chrX               567753 1 + 17718866 --T
s cb4.chrX              21079168 1 - 21540570 -t-
i cb4.chrX              I 33 C 0
s caeSp111.Scaffold630   5573584 1 + 20921866 A--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      105887 1407 +   258924 I
e caeRem4.Crem_Contig24   386568 47 -  1162296 I

a score=1117.000000
s ce10.chrX               567754 4 + 17718866 ACTT
s cb4.chrX              21079169 4 - 21540570 acat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   386615 4 -  1162296 ACTC
i caeRem4.Crem_Contig24 I 47 C 0
s caeSp111.Scaffold630   5573585 4 + 20921866 ACTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      105887 1407 +   258924 I

a score=334939.000000
s ce10.chrX               567758 848 + 17718866  
s cb4.chrX              21079173 889 - 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig24   386619 890 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 458
s caeSp111.Scaffold630   5573589 875 + 20921866  
i caeSp111.Scaffold630  C 0 I 27
s caeJap4.Scaffold54      107294 855 +   258924  
i caeJap4.Scaffold54    I 1407 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=0.000000
s ce10.chrX               568606 31 + 17718866 GTATAACTTGATTTGAATAACTTGTTCACTT
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      108149  0 +   258924 C
e cb4.chrX              21080062 37 - 21540570 I
e caeSp111.Scaffold630   5574464 27 + 20921866 I
e caeRem4.Crem_Contig24   387509 458 -  1162296 I

a score=89926.000000
s ce10.chrX               568637 239 + 17718866 GAACTTACCAGTCTCCCCATGTGAA---ATTGATGTTTGAGGGCTCATTTCCTCTGCGGCGAAAAATTCTTTAAGACGCGTATTACTCACGGAACATTGAACAGCTTCTCCATAGACCATTGCAACCATTGCCAAAGGCATTCTCAGAATGTCAAACAGCGAGAGGGCTACAAACGTAATTTCTGGCGTGAGAACATTGTTTTCTGGATCCAAGTACACGTAAACAACAAATGAGATGACAG
s cb4.chrX              21080099 236 - 21540570 AGACTCACCTGATTTTTCATAG------CTGATAGATTGAGAATCCATTTCGTCAGCTGCGAAAAATTCCTTCAAGCGAGTATTACCAACTGCACACTGAACGGCTTCTGCGTACACCATCGCAACCAAAGCTAATGGCATTTTTAAGATATCGAATAATGAAAGCGCAACGAAACAAATCTCTGGTGTTAGCACGTTGTTTTCCGGATCTATCAGCACGTAGACAACAAAGGAAACAATGG
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig24   387967 239 -  1162296 GAACTTACCAATGTTTTTATGAGTAATCCTGTTATTTGGAGG---TATCTCGTCAGCAGCGAAAAACTCCTTGAGACGGCCGTTACTAACAGAACACTGAACGGCTTCTCCATAAACCATTGCCATAATGGCAAGCGGCATTCTGAGGATGTCAAATAGAGACAGAGCGACAAAGGTGATTTCAGGAGTGAGGACATTGTTTTCAGGGTCCAGGAAGACGTAGACAACAAAGGAGATGACAG
i caeRem4.Crem_Contig24 I 458 C 0
s caeSp111.Scaffold630   5574491 239 + 20921866 CCAATCACCTGATTTTCCTAGAGTA---ATGGCTTGTTGAGGAGCAATTTCGTCGGCAGCGAAAAACTCCTTCAGTCGACTGTTACTTACAGCACACTGGACGGCTTCACCGTACACCATTGCAAGAAGAGCAAGTGGCATTCGGAGAatatcgaaaagagaaagtgcTACAAATGTGATTTCAGGGGTAAGCACGTTGTTTTCAGGGTCCAAAAGCACATAAACAACGAATGAAATCACGG
i caeSp111.Scaffold630  I 27 C 0
s caeJap4.Scaffold54      108149 226 +   258924 -------------CCTCCGTAGGAG---ATTGAAGTTTGAGAGTACATCTCTTCGGATGCGAAAAACTCTTTTAATCTTGTGTTACTTGCGGCACACTGCACAGCTTGACTGAACACCATTGCAAACACTGCTAGAGGGAATCGCAAAATGTTGAACAATGCGAGCGCTACGAAGGTGATTTGCGGGGTGAGAATGTTATTTTCCGGGTCCCATAAAACGTAGAGGCCAAATGTGAGAACAG
i caeJap4.Scaffold54    C 0 I 610
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=140541.000000
s ce10.chrX               568876 331 + 17718866 AT--------------------------------------------------------GCTAGAAATGGAGCACAGATCCAAGAAAATACGATTGCAGCCATGAAATAAGACAACTTCTTTAATATGTGTAATTCACGCTCCCGAATTTTCAGAACCATGTTCTCCATACTCCTCTCCCAAGAGTACAACTTCAAAACTTTCATTCCATTCAGAATCTCCGACATCATTTTTATCCGTTCATCTTTTAATTTCATTTGTTCGGTTTGGCACTTTCGCATTTGAATTGCTATCAATCCGTTGACTGGGAGAGCAAGAATCAGTACAACAAGGCCAGCCAAGGCTGCAACACCAAGAAATTTCCAAAGGAAGTAAATCGATAGGAAGAT
s cb4.chrX              21080335 383 - 21540570 AGACCTGAAATTTG----TTTGCGGTTCAAACGATTGATGAAATGCAAACTGTGACTTACCAAAAATGGGGCACACACAAAGGAAAATATGATTCCAGCATTGAGATAGGACAGTTTTCGTAATACACGCAACTCTTTCTCTCGGATTTCCAAAACCATTTTTTCCATACTCTTCTCCCATGCGTAaagcttcaaaactttcattccgttcagaatttctgacatCATTTTTATTCTTTCATCTTTATACTTCATTTGCTCTGCATGACCTTTTCGCATTTGGCTGACAATTAATCCATTTAGTGGAAGTACCGCTAGCAAACCAAAGAATCCAGCCAAAACTGCTACTCCAAGCAGTCTCCAGAGGAAGAAAATGGCTAAAATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   388206 384 -  1162296 ACACCTGACAATCGGGATTTTTTACTTT---ctattacagaaaaaaacccaaaaacttACCATAAATGGAGCGCAAATCCATGAGAACACGATTCCGGCATTCAAATAAgagagttttttcaaaactttgagttCCTTCTCACGGATTTCCAAAACCATCTGCTCCATACTCTTCTCCCACGAGTagagtttcaaaactttcattccATTCAAGATTTCAGACATCATTTTGATTCTCTCGTCTTTGTACTTCATCTGTTCCTGATGACATTTTCTCATTTGGCTGGCAATGATTCCATTGACAGGGATAACAAGAATCAATACCAAAAATCCAGCGAGAACAGCTACTCCAAGAAGTTTCCAGAGGAAGTAGATGGAGAGGAAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5574730 331 + 20921866 AA--------------------------------------------------------ACTAAAAACGGAGCACAAATCCACGAGAACACGATTCCAGCATTCAAATAAGAAAGTCTCTTCAAGACCATCAACTCCTTTTCTCGGATCtctaaaaccattttttccataCTCTTTTCCCAAGAATACAGTTTGAGCACTTTCATTCCATTTAGAATCTCCGACATCATCTTGATTCGTTCATCTTTGTATTTCATTTGTTCCATGTGACACGCACGCATTTTTCCAGCAATTATTCCGTTGATTGGAATTACCATGATAAGTGCAACAAAACCGGCAAAAACGGCCACTCCGAGAATTTTGTAGAGGAAGAATATTGAGaggaatat
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      108985 331 +   258924 --------------------------------------------------------ATACCAAAAAAGGCGCGCATGCCCAAGATAGAGTGGTAGCCGCATTAAGATACGAAAGTTTCTTCAAAACTTGTATTTCTTTCTCCCGAATATCCAGCACCATTTGTTCCATGCTGTTTTCCCAAGAATAGagtttcaaaactttcattccattcaaaatttccgacatcaTCTTGATTCGCTCGTCCTTATGCTTCATCTGCTCCATTTGGCAATTTCGCATTTTAATAGAAATCCAAGAATTGAATGGAATCATGAGAATTAAAATCAGAAAACCAGCGAGAACAGACACTCCGAGAAGTTTCCATAGGAAATAGAGAGCGAGAAGAAT
i caeJap4.Scaffold54    I 610 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=1448.000000
s ce10.chrX               569207 6 + 17718866 CTGAAA
s caeRem4.Crem_Contig24   388590 6 -  1162296 CTGAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5575061 6 + 20921866 ctgaaa
i caeSp111.Scaffold630  C 0 I 58
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      109316 0 +   258924 C
e cb4.chrX              21080718 0 - 21540570 C

a score=91.000000
s ce10.chrX               569213 1 + 17718866 T
s caeRem4.Crem_Contig24   388596 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 21
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      109316 0 +   258924 C
e cb4.chrX              21080718 0 - 21540570 C
e caeSp111.Scaffold630   5575067 58 + 20921866 I

a score=0.000000
s ce10.chrX               569214 662 + 17718866  
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      109316   0 +   258924 C
e cb4.chrX              21080718   0 - 21540570 C
e caeSp111.Scaffold630   5575067  58 + 20921866 I
e caeRem4.Crem_Contig24   388597  21 -  1162296 I

a score=49.000000
s ce10.chrX               569876 12 + 17718866 GAAAAGTTTCAT
s caeRem4.Crem_Contig24   388618 12 -  1162296 GAATAGATACTA
i caeRem4.Crem_Contig24 I 21 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      109316  0 +   258924 C
e cb4.chrX              21080718  0 - 21540570 C
e caeSp111.Scaffold630   5575067 58 + 20921866 I

a score=573.000000
s ce10.chrX               569888 2 + 17718866 AC
s caeRem4.Crem_Contig24   388630 2 -  1162296 AC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5575125 2 + 20921866 AC
i caeSp111.Scaffold630  I 58 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      109316 0 +   258924 C
e cb4.chrX              21080718 0 - 21540570 C

a score=425881.000000
s ce10.chrX               569890 1190 + 17718866  
s cb4.chrX              21080718 1149 - 21540570  
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24   388632 1146 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5575127 1170 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      109316 1135 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877  404 +   193288 I

a score=602.000000
s ce10.chrX               571080 3 + 17718866 TGT
s caeRem4.Crem_Contig24   389778 3 -  1162296 TGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      110451 3 +   258924 tgc
i caeJap4.Scaffold54    C 0 I 30
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21081867 39 - 21540570 I
e caeSp111.Scaffold630   5576297 0 + 20921866 C

a score=-355.000000
s ce10.chrX               571083 11 + 17718866 TGGAACCA--CCT
s caeRem4.Crem_Contig24   389781  7 -  1162296 ----AACa--ttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5576297  9 + 20921866 ----AACAACctc
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      110454 30 +   258924 I
e cb4.chrX              21081867 39 - 21540570 I

a score=468.000000
s ce10.chrX               571094 22 + 17718866 ATCATTTT-----TATTTCCATGTGTC
s caeRem4.Crem_Contig24   389788 27 -  1162296 actatttttgttagattttgatttgaa
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold630   5576306 19 + 20921866 aaaatctc-----aattt---tttgaa
i caeSp111.Scaffold630  C 0 I 13
s caeJap4.Scaffold54      110484 22 +   258924 atgatttc-----aatttcaattctCA
i caeJap4.Scaffold54    I 30 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21081867 39 - 21540570 I

a score=74979.000000
s ce10.chrX               571116 196 + 17718866 AACTTACAATTCTAAACGATATAGGTGAAAAGCATCGAAGTTGAGCAGTTCGGGTATGAAGAAGTTGGTAAATGACGATGAACGAAAAAACTACCAAAAACAATGTGGGTATTGTAGAGAAGTCAGTGTGCTGACCACACTTTGTGACATGTGGAATGCTGCTGCGGTTTTTCCAACCAGGTTCGAGGAGCTGAAA
s cb4.chrX              21081906 196 - 21540570 aacctaCAATTCGAAATGAGACCGGCGAGAATGATTGGAGTTTAGCATTATGCGTGTGACGCAATGCGTAGATCAAAACTGGAGAGAATATGCAAAGAAAGAAAGTGGGTATAGTTGAAAAATCGGTATGCTGGCCGCAGCTAGTGATATGTGGAAGGTGACTCCGATTTTTCCAACCCGGCTCGAGAAGCTGAAA
i cb4.chrX              I 39 I 1773
s caeRem4.Crem_Contig24   389817 196 -  1162296 aacttacgATTCGTAAAGAAATTGGTGAATAACAACGGAGCGGACCATTTCGAGAAAGGTAAAGTGCATATATTAGGACTGGGCAGAAAACAACAAGGAATAACGTGGGTATTGTTGAGAAGTCAGTATGTTGACCACAATTTGTGACTTGAGGAAGGCTGCTCCGGTTCCTCCAACCTAGTTCGaggagctgaaa
i caeRem4.Crem_Contig24 I 2 I 893
s caeSp111.Scaffold630   5576338 196 + 20921866 ATCTTACAATCCTGAGCGAAACTGGTGAGAAACATCTGATTTGAGCATTATGAGTGTGATAAAGAGCATAGACAAGAACTGGAGAGAagataacaagaaaaatagtagGGATAGTGGAGAAATCCGTGTGCTGACCGCAGTTGGTGACATGAGGAAGAGTACTGCGATTCTTCCATCCCGGTTCGAAGAGCTGTat
i caeSp111.Scaffold630  I 13 I 2
s caeJap4.Scaffold54      110506 196 +   258924 AACTTACTATTCGCAAAGAAATTGGAGAACAGCTTCGAAGGCGGGAATTCCGGCTTTGGTACAGTTGGTAAAATACTACAGATGAAAATAGCACAAGAAATAGTGTGGGAAGCGTGGAAAAATCAGTGTGTTGCCCACACTTAGACACATGTGGAATGCTTGTGCTGTTTCGCCATCCTGCTTCgaaaatctggaa
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I

a score=273.000000
s ce10.chrX               571312 1 + 17718866 A
s caeSp111.Scaffold630   5576536 1 + 20921866 a
i caeSp111.Scaffold630  I 2 C 0
s caeJap4.Scaffold54      110702 1 +   258924 a
i caeJap4.Scaffold54    C 0 I 743
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21082102 1773 - 21540570 I
e caeRem4.Crem_Contig24   390013 893 -  1162296 I

a score=373.000000
s ce10.chrX               571313 4 + 17718866 ATTC
s caeSp111.Scaffold630   5576537 4 + 20921866 attc
i caeSp111.Scaffold630  C 0 I 1728
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      110703 743 +   258924 I
e cb4.chrX              21082102 1773 - 21540570 I
e caeRem4.Crem_Contig24   390013 893 -  1162296 I

a score=0.000000
s ce10.chrX               571317 1267 + 17718866  
e caePb3.Scfld02_254      144877  404 +   193288 I
e caeJap4.Scaffold54      110703  743 +   258924 I
e cb4.chrX              21082102 1773 - 21540570 I
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   390013  893 -  1162296 I

a score=2637.000000
s ce10.chrX               572584 65 + 17718866 AAAATTCAAGCCTACCTCCGTTTTATCTCCACAGACAAGCTCTCGCACGAGTGGAAACATATTTG
s caeJap4.Scaffold54      111446 65 +   258924 aagATCAAATCTCACCTCATTCTCGTTTCCGCAAACAATTTCGCGAACTAGCGGAAACATCCTTG
i caeJap4.Scaffold54    I 743 T 11156
e caePb3.Scfld02_254      144877 404 +   193288 I
e cb4.chrX              21082102 1773 - 21540570 I
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   390013 893 -  1162296 I

a score=0.000000
s ce10.chrX               572649 652 + 17718866  
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      111511 11156 +   258924 T
e cb4.chrX              21082102 1773 - 21540570 I
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   390013 893 -  1162296 I

a score=6941.000000
s ce10.chrX               573301 290 + 17718866 AATATTCTATATATCAAGGAGACAGAACCCTCAAAGTGGTAAAGAAAAA--------ATATCTATAAGTGCTAAGAACTCTA--CACATAGACGCAGACAGCGTGGTACGTGTTCTGTGATTTTGTGTCCATCTGTCGC-GCGTCTCCGTCTCGTGTAGTAAATC-------TTTGTGTATTTGCGGACGAGATTTGAGATTTCGCAATGTGCTGATGTTCTTGCGCAA----------------TAATAGTTAAAAACCTCATT----TGATGAAGTTTTTCGAAACGA---------AGGTGCGATTGAGTGACCCTCAAACTA-----TTTCGAATTAA
s caeRem4.Crem_Contig24   390906 339 -  1162296 aattttttatatat-GAGCCGACATCACCATGAGACgtgtgagaaaaaatgaggagtGTATCTGCAAGTACCACGGGCATAAACCACATTTTACCACGAAAAGGGGTACGTGTTTTGTGATTTCGTGTCCAGTTGTCTCCGCCTCTCTTTCTCTACTAAAAAACTCAGTTGGTGTGTGTATTTGTCGACGAGATTTGAGATTTCGCAATGTCCCGATCGGATTGCGCAATGCAACAACACAAACCTACTAttcaaaaaggttttttttatgATGA--TGTTTCGAAATAATGAGTATTTAGACAGATTTGAGTGACCctcaaaacgaaaattttcgaaataa
i caeRem4.Crem_Contig24 I 893 I 1965
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      111511 11156 +   258924 T
e cb4.chrX              21082102 1773 - 21540570 I
e caeSp111.Scaffold630   5576541 1728 + 20921866 I

a score=0.000000
s ce10.chrX               573591 2724 + 17718866  
e caePb3.Scfld02_254      144877  404 +   193288 I
e caeJap4.Scaffold54      111511 11156 +   258924 T
e cb4.chrX              21082102 1773 - 21540570 I
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   391245 1965 -  1162296 I

a score=587.000000
s ce10.chrX               576315  97 + 17718866 AGCCACATATTAAAAAAT------TTATTCAGAACTTTGATTGTTTTTTTT---TTCACTGACTGT------------------TAGAAAAATATATAATTTGATATGAATGAAGatttttaaa
s cb4.chrX              21083875 122 - 21540570 AACCATTTGtagaaaaatgcgattttatTTAG--TTttgattattattattaaGTTCAACAAGTGTAactaatttgattttttgcataaaaaggtaaacgaaaatataaacgaaagggacaaaa
i cb4.chrX              I 1773 C 0
e caePb3.Scfld02_254      144877 404 +   193288 I
e caeJap4.Scaffold54      111511 11156 +   258924 T
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   391245 1965 -  1162296 I

a score=-504.000000
s ce10.chrX               576412  7 + 17718866 aaattta-----
s cb4.chrX              21083997 11 - 21540570 -aaattgcgata
i cb4.chrX              C 0 I 15
s caePb3.Scfld02_254      145281  7 +   193288 aaaagtg-----
i caePb3.Scfld02_254    I 404 C 0
e caeJap4.Scaffold54      111511 11156 +   258924 T
e caeSp111.Scaffold630   5576541 1728 + 20921866 I
e caeRem4.Crem_Contig24   391245 1965 -  1162296 I

a score=362.000000
s ce10.chrX               576419 22 + 17718866 aaaaaaacaaaaataGACATTC
s cb4.chrX              21084023 22 - 21540570 gaaacgagaaaaaatgacGGAG
i cb4.chrX              I 15 I 3
s caeRem4.Crem_Contig24   393210 13 -  1162296 aaaatgacaaaaa---------
i caeRem4.Crem_Contig24 I 1965 C 0
s caePb3.Scfld02_254      145288 16 +   193288 -aaaaaagaaagagcaa-----
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      111511 11156 +   258924 T
e caeSp111.Scaffold630   5576541 1728 + 20921866 I

a score=6153.000000
s ce10.chrX               576441 59 + 17718866 TTTGGAATCATTATGCGTTTTT--GGT-----------AATAGTTAATTTT---------CACAGTGTCTACACAACATTT
s cb4.chrX              21084048 58 - 21540570 TTTGGAATCATTATGCtttttttCGTG----AAAGTCAGAgtaaaaatatt-------------------ataaaacGTTA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   393223 75 -  1162296 taggGAATCATTATGCTTTTTG--GTA----AAAGtttaattagatttttttataCTCGAATGGGTTTTCACACAACATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5578269 68 + 20921866 TTTGGAATTATTATGCGTTTTG--gtt-------ataaaataaaaaatttt----ttggagttaATTATTAAACGATATTA
i caeSp111.Scaffold630  I 1728 C 0
s caePb3.Scfld02_254      145304 62 +   193288 --TGGAATCATTAtgcttttcc--atttttcaaaatcagataaata---------------caagttttcagataatatTG
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      111511 11156 +   258924 T

a score=95279.000000
s ce10.chrX               576500 135 + 17718866 GCATCTTTTGCCATTGAATAGAAGATTCCATCCGGATTTGACAAAAGTTTCTTCGGAGTGTCAAACTCGGCTACACAACCTTTGTCGAGAACAAGTAGACGATCACTATCCATAACCT-----------GAAACCAGTTTAG--CATT----------
s cb4.chrX              21084106 135 - 21540570 GCATCTTTGGCCATGGAATAGAAAATTCCATCCGGGTTTGCAAGGAGTCTCTTCGGAGTGTCGAACTCTGCCACACGTCCTTTGTCCAACACTAAGAGGCGATCACTGTCcataacct-----------gaaaaatcttttg--TGCT----------
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24   393298 131 -  1162296 GCATCTTTTGCCATCGAATAGAATATTCCGTCGGGGTTGGAGAGAAGTTTTTTCGGTGTGTCGAATTCAGCCACTCGTCCCTTGTCCAACACCAAAAGGCGATCACTATCCATAACCT-----------aaaaaaaaT------TGCT----------
i caeRem4.Crem_Contig24 C 0 I 12
s caeSp111.Scaffold630   5578337 135 + 20921866 GCGTCTTTTGCCATTGAATAAAAGATTCCGTCGGGGTTTGATAACAGCTTTTTGGGTGTGTCAAACTCAGCAACCAATCCTTTGTCAAGAACTAGAAGACGATCACTGTCCATGACCt-----------aaacaaaatataa--aagt----------
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_254      145366 135 +   193288 GCGTCCTTTGCCATAGAGTAGAACAATCCATTAGTATCAGAAAGCAGTTTTTTCGGAGTATCAAACTCGGCAACAACGCCTCTGTCCAACACAAGGAGACGGTCGCTATCAATAACCT-----------GGAAAAAGATTTG--CAtt----------
i caePb3.Scfld02_254    C 0 I 1714
s caeJap4.Scaffold54      100355 158 +   258924 GCATCTTTTGCCATCGAATAAAATATGCCATCCACATTTGAAAGAAGtttttttGGACTATCGAACTCAGCAACTCGTCCTTTATCCAAAACAAGAAGACGATCGCTGTCCATGaccttaaaattaaaaaaaaaagattttatctATTTCGAGAAACG
i caeJap4.Scaffold54    T 11156 C 0

a score=-12778.000000
s ce10.chrX               576635 30 + 17718866 GGATTTCACACACAAATGC------------TCGAGAAATGT---------
s cb4.chrX              21084261 37 - 21540570 TGTTTATGAGAACAAATATGAGAG-----AATTTAGAGCTGT---------
i cb4.chrX              I 20 I 33
s caeRem4.Crem_Contig24   393441 37 -  1162296 TTTTGATTACCACAGGCAGAAGCA-----ACTCTATAAAGGT---------
i caeRem4.Crem_Contig24 I 12 I 13
s caeSp111.Scaffold630   5578475 21 + 20921866 GGTTTGCTTAATCAGTTACTA------------------------------
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold54      100513 51 +   258924 AGACACTTCGCACCACtggtggagcgcgaaatacATAGACAGTTTGAATTT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      145501 1714 +   193288 I

a score=168497.000000
s ce10.chrX               576665 186 + 17718866 ACCGTATTCAGTCGATGGGCAATTGTGAGAACAGTACAATCTTTGAACTGCTCTCGAATGGTTTTTTGAAGAAGACTATCGGTTTCGACGTCAACTGCAGCGGCGGCTTCATCTAACACCAACACTTTGGTTTTTCTGAGAAGAGCTCGAGCAAGGCAGATTAGTTGTCGTTGTCCAACACTGAAA
s cb4.chrX              21084331 186 - 21540570 ACCGTATTTAGACGATGAGCAATTGTGAGAACTGTGCATTCTTTGAATTGTTCACGAATAGTTTTCTGTAGCAGACTATCAGTTTCCACATCAACTGCTGCTGCTGCCTCGTCCAATACCAACACTTTGGTTTTTCTGAGAAGTGCACGCGCAAGGCATATCAGCTGCCTCTGCCCAACGCTGAAA
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24   393491 186 -  1162296 ACCGTATTCAAACGATGGGCAATTGTGAGCACTGTACATTCTTTGAATTGTTCTCTGATCGTTTTCTGAAGAAGACTGTCAGTCTCCACATCCACTGCAGCAGCGGCCTCGTCAAGAACCAACACTTTTGTTTTACGAAGGAGAGCACGAGCCAAACAGATGAGTTGTCGTTGTCCAACACTGAAA
i caeRem4.Crem_Contig24 I 13 I 252
s caeSp111.Scaffold630   5578496 186 + 20921866 ACTGTGTTCAAACGATGCGCAATTGTGAGTACTGTACACTCTTTGAACTGTTCTCGAATAGTTTTCTGAAGCAGACTATCGGTCTCTACGTCAACTGCAGCGGCTGCCTCGTCCAAAACCAATACTTTCGTTTTCCTGAGCAGAGCTCGAGCCAAACAAATTAATTGGCGTTGCCCGACGCTGAAA
i caeSp111.Scaffold630  C 0 I 31
s caePb3.Scfld02_254      147215 186 +   193288 ACCGTATTGAGACGATGGGCAATTGTGAGAACAGTGCAGTTGTTGAATTGTTCACTGATGGTTTTTCGAAGAAGGCTGTCTGTTTCGACGTCCACTGCGGCGGCAGCTTCATCAAGTACCAGAACTTTCGATTTCCTGAGTAGAGCACGAGCCAGACAAATCAATTGACGTTGGCCGACGCTGAAT
i caePb3.Scfld02_254    I 1714 I 3
s caeJap4.Scaffold54      100564 186 +   258924 ACCGTGTTTAGCCTGTGAGCAATTGTCAGAACGGTGCATTCTTTAAACTGctcttttattgttttctgAAGAAGACTATCAGTTTCAACGTCCACTGCAGCGGCAGCTTCATCAAGAACGAGCACTCTTGTTTTTCTGAGCAGCGCTCGCGCCAAGCAGATCAGCTGGCGTTGTCCAAcactaaaa
i caeJap4.Scaffold54    C 0 C 0

a score=67.000000
s ce10.chrX               576851 1 + 17718866 G
s cb4.chrX              21084517 1 - 21540570 G
i cb4.chrX              C 0 I 25
s caePb3.Scfld02_254      147404 1 +   193288 A
i caePb3.Scfld02_254    I 3 C 0
s caeJap4.Scaffold54      100750 1 +   258924 a
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630   5578682 31 + 20921866 I
e caeRem4.Crem_Contig24   393677 252 -  1162296 I

a score=311.000000
s ce10.chrX               576852 2 + 17718866 GT
s caePb3.Scfld02_254      147405 2 +   193288 GT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      100751 2 +   258924 at
i caeJap4.Scaffold54    C 0 I 44
e cb4.chrX              21084518 25 - 21540570 I
e caeSp111.Scaffold630   5578682 31 + 20921866 I
e caeRem4.Crem_Contig24   393677 252 -  1162296 I

a score=448.000000
s ce10.chrX               576854 32 + 17718866 TCACAATTATCTTTTTCATTAGAATTTTTTCA
s caePb3.Scfld02_254      147407 28 +   193288 ----ATCTATATTCTCTGATAGAAGTTTCAAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      100753 44 +   258924 I
e cb4.chrX              21084518 25 - 21540570 I
e caeSp111.Scaffold630   5578682 31 + 20921866 I
e caeRem4.Crem_Contig24   393677 252 -  1162296 I

a score=0.000000
s ce10.chrX               576886 1060 + 17718866  
e caePb3.Scfld02_254      147435    0 +   193288 C
e caeJap4.Scaffold54      100753   44 +   258924 I
e cb4.chrX              21084518   25 - 21540570 I
e caeSp111.Scaffold630   5578682   31 + 20921866 I
e caeRem4.Crem_Contig24   393677  252 -  1162296 I

a score=712.000000
s ce10.chrX               577946 141 + 17718866 ATTTTTCGATTTTCAATAATCGAAAAATAGAAACATTTTTGTTTTTCAATTTTCTGAAAAAATTGAAAAACCGACACCCTTGACCCACATCCAAGAAAAGCGATATAGAACCCGGAATG------------GGTTTCTACAGCT--AGAAAAGTT
s caeRem4.Crem_Contig24   393929 143 -  1162296 atttttggaaaatcagcattcgaaaaattgaagaaccAAAATTCTACAAGCTACATACAAAATT----ATCCGTCAACTT--------GTTCTGTAGCGGCAACACAGGAGCccaaatataattttgttgtgattttctcattttcagcaaagat
i caeRem4.Crem_Contig24 I 252 C 0
e caePb3.Scfld02_254      147435   0 +   193288 C
e caeJap4.Scaffold54      100753  44 +   258924 I
e cb4.chrX              21084518  25 - 21540570 I
e caeSp111.Scaffold630   5578682  31 + 20921866 I

a score=5.000000
s ce10.chrX               578087 11 + 17718866 ---TGAAAAAAAAC
s cb4.chrX              21084543 11 - 21540570 ---TGAAATTTATC
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig24   394072 14 -  1162296 ATACAGAATTTCAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      147435  0 +   193288 C
e caeJap4.Scaffold54      100753 44 +   258924 I
e caeSp111.Scaffold630   5578682 31 + 20921866 I

a score=1031.000000
s ce10.chrX               578098 3 + 17718866 TTG
s cb4.chrX              21084554 3 - 21540570 CCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   394086 3 -  1162296 TCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5578713 3 + 20921866 TTA
i caeSp111.Scaffold630  I 31 C 0
s caePb3.Scfld02_254      147435 3 +   193288 TTA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      100753 44 +   258924 I

a score=406015.000000
s ce10.chrX               578101 641 + 17718866  
s cb4.chrX              21084557 683 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   394089 674 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5578716 629 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      147438 710 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      100797 666 +   258924  
i caeJap4.Scaffold54    I 44 C 0

a score=-35214.000000
s ce10.chrX               578742 118 + 17718866 TTATTTTAAGGGCGA------------------------TTCGTTG----------------------------------TTCAAGTGAGTTCAAAAAACGAAAAAAACACgcctcgttttaccgttttatttaactttcaaaattcaattGTACTGTTGTAAATTTCAGTAGTTA
s caeRem4.Crem_Contig24   394763  30 -  1162296 ----------------------------------------TCAATA------------------------------------------------------------------------------------------------ATTT---ATGAGAATTTCTAAA-------TGCCA
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold630   5579345   9 + 20921866 ---------------------------------------ttcattg--------------------------------------------------------------------------------------------------------------------------------ca
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_254      148148 157 +   193288 -------gaaagtgaattgaaaaaatcctcACAATGGAATTCATTGACAGTACAGCTTTAGGATTGTCCAGAATTTCGTGAGCAGacttatttcagaaatggattcaGCGTG---------GCCGAATTAGTCTGCTCACAAATTT---TTGGACAATCCTAAAGCTGTACTGTCA
i caePb3.Scfld02_254    C 0 I 19
s caeJap4.Scaffold54      101463  11 +   258924 -------------------------------------------------------------------------------------------------------------------------------TTATTTAGATT--------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21085240   0 - 21540570 C

a score=85356.000000
s ce10.chrX               578860 241 + 17718866 AGTTGAATAAATCAATTCAAATGAAAATGTTGGTTTGTTTTAAAATAATAATAATAACATTTTCCTGTTGATTGCTTCTAAAAAACGGCTCG-----ACTTACATTGAGAGCGTAGGAAACAGATAAACCAACTAAGCCAGCAGAGAGGCCGGGAGAATCACGGAAGTAAACAGCAGCTCCGGCGGAAGATAGAACAATCAGATTACCGACCATTTCTAGACGAACAGCCAGCCATCTGCAACTTT
s cb4.chrX              21085240 166 - 21540570 ----------------------------------------------------ggttgaaattttgtttt----------------------------gctCACGTTCAATGCATATGATACCGATAATCCAACAAGTCCAGCCGAGAGCCCTGGTGAGTCGCGGAAGTAAACTGCAGCTCCGGCAGCAGAAAGGACGATCAAATTGCCAACCATTTCAAGTCGAACTGCCAACCacctaaaaaatt
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24   394796 147 -  1162296 -------------------------------------------------------------------------------------------------ACTCACATTCAACGCGTAAGATACAGATAGTCCAACAAGACCAGCAGATAGACCGGGAGAGTCACGGAAGTAGACAGCCGCTCCAGCGGCAGAGAGGACAATCAAGTTTCCTACCATTTCCAGACGAACAGCGAGCCATCTAAACAA--
i caeRem4.Crem_Contig24 I 3 I 9
s caeSp111.Scaffold630   5579359 161 + 20921866 AACCAA-------------------------------------------------------------------------------------AAGGAAACTTACGTTTAAAGCATAGGAAACAGATAATCCAACTAAACCAGCCGAAAGACCTGGGGAGTCACGGAAATAGACAGCAGCTCCAGCAGCAGAAAGCACAATGAGATTACCAACCATTTCCAAACGGACAGCAAGCCATctaaaaaacc
i caeSp111.Scaffold630  I 5 I 16
s caePb3.Scfld02_254      148324 245 +   193288 aacaaaaaactagaactCAAATTATgcggtttttttattttaaagcGATAAATACTGAACTTCTGTTTTG-TTTCCACCGTAATTCAGTTCAAATAAACTTACATTTAGTGCATATGAAACTGATAATCCAACAAGTCCAGCAGTTAATCCTGGGGATCCTCGGAAATAGACGGCTGCACCAGCagcagaaaaaacaatcagGTTTCCAACCATTTCCAAACGAACCGCTAACCATCTACAAAGtt
i caePb3.Scfld02_254    I 19 I 370
s caeJap4.Scaffold54      101474 158 +   258924 ---------------------------------TGAATCATAAATTAAGAAGAAC------------------------------------------ACCAACATTCAATGCGTAGGAAACCGATAAGCCCACAAGTCCTGCGGATAGACCAGGCGAGTCACGGAACCAGACAGCTGCGCCAGCGGAAGAGAGCACAATCAAGTTTCCTACCATCTCCAGGCGGACAGCAAGC-------------
i caeJap4.Scaffold54    C 0 C 0

a score=217141.000000
s ce10.chrX               579101 630 + 17718866  
s cb4.chrX              21085426 616 - 21540570  
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig24   394952 640 -  1162296  
i caeRem4.Crem_Contig24 I 9 C 0
s caeSp111.Scaffold630   5579536 586 + 20921866  
i caeSp111.Scaffold630  I 16 C 0
s caePb3.Scfld02_254      148939 657 +   193288  
i caePb3.Scfld02_254    I 370 I 207
s caeJap4.Scaffold54      101632 656 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=2807.000000
s ce10.chrX               579731 13 + 17718866 ATTTAAACAATTT
s cb4.chrX              21086042 13 - 21540570 AACTGAAGAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   395592 13 -  1162296 AGCTAAACAACTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5580122 11 + 20921866 --TAAAACGACAC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      102288 13 +   258924 AATTGAACGACTT
i caeJap4.Scaffold54    C 0 I 114
e caePb3.Scfld02_254      149596 207 +   193288 I

a score=-12035.000000
s ce10.chrX               579744 100 + 17718866 TCCAGTAAGCGTTTGGTATCTCAGTAGGCGCGTTCGCACATTCTGCGCACATTGCTGTTGCTGTGCCCTTTTTCTTATTAGCCTAGCCTCGTGCGCACAA
s cb4.chrX              21086055  25 - 21540570 TTTATTACGCATTTAAT----------------------------------------------TGCCCTTT-----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   395605  15 -  1162296 ACGATAAGACATTGA-------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5580133  10 + 20921866 G----AAAACATGA--------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      149596 207 +   193288 I
e caeJap4.Scaffold54      102301 114 +   258924 I

a score=-29841.000000
s ce10.chrX               579844  51 + 17718866 ----------------------------------------------------TCTG-----------------CGCAGACGCCTACCGAACTATTAAAGAGCTAAGTTATTAAA------CCTT----------------------CA
s cb4.chrX              21086080  42 - 21540570 AAATCTGATGAAGAACACA---------------------------------AATG-----------------GACAAATTG---------------------------AAGCA-------CTT----------------------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   395620  34 -  1162296 ---------GAAGGATAAA---------------------------------CCTT-----------------CCTAGTCTG---------------------------TTCTA------TCCT----------------------TC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5580143  42 + 20921866 ----------------------------------------------------AATG-----------------CGCGAAATG-------------AAAGT--TTCGGAATTCCAGTATTTTCCC----------------------Cg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      149803 144 +   193288 ---TTTGCTTAGGAGGATAACTATTTGATATATGGCTCAGTTATGTGATCTACATGAACATCTGATAAAACTTCGTGAAACGGATTAGCAATTTCAAAGTAATTCGGAAATATA-TGTTTTCCTAATTCAGTCATATGAGAGCTTGCa
i caePb3.Scfld02_254    I 207 C 0
e caeJap4.Scaffold54      102301 114 +   258924 I

a score=68611.000000
s ce10.chrX               579895 309 + 17718866 TCAAAATCTGAATGGTTTCTCATTTTTGTACATTTGAAGTCACATTTAA-CAG---------------GACGGATTGTAATAGCTTAACCATGCA--------CATG--CGATGCTAACCAAAAGAAAGTAGTATCCTATCAGAACTATAGTGATAGGAAATGATGAGAGAGGAGTTGCATAGATGGGCACTGCAAATATAGTGACAGCTTGAACGATGGCTCCAACAAATGTCATGATGCATGATGGGAGTCGGTAGTCGATGACGTCAATGTCCTGG------------------ATAAATATT--------TG----------AAAATTCATGCGTTTATATCACTTCACACTATTCACACTATCATT
s cb4.chrX              21086122 263 - 21540570 TGTAAGGCAGAATGT---------------CAtgcatttttaaattaaa-----------gtGTAA--AACTGAT----------------------------------TCATGCTAACCAGAAGTCGAAGATATCCATATAATGTTGGAACAATGATCAGTAGTGAGCCAGGTGTCGCATATATAGGCACAGCAAAAATAGTCACAGCTTGTACAATTGCTCCAACAAATGTCATTATGCAAGCAGGCAATCGAGAGTCGATGACATCAACATCCTGA------------------GAAAAACTCCATAAAATAC----------TAACTCCATGCTTTTC--ACActtt----------------tatt
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig24   395654 324 -  1162296 TCTATAACAGAA-------------------ATACAATGACGAATTGAAACACTTTGACGGTGTAAGTAACATATCATGC---------CATGCAGCAAGAGATACA--CCATGCTAACCAAAAGTCGGACGTATCCGTATAAAACGGGAACGATGAGCAATAATGATGCAGGTGTAGCATATGCTGGCACGGCAAATATAGTGACGCCTTGAACTATTGCTCCAACAAATGTCATGATGCAGGCAGGAAGTCTCGAATCGATCACATCAACGTCCTGGATGAAAATACAATTGCACGCAGAACTTATTAGATTTCACTCTTGCTGTATATTCATGCATTTT--TCACTTC---------------ACACT
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold630   5580185 266 + 20921866 tctaaaaaaaga---------------------acaacgACGAATTGAA-CAACTTTCTTG--------ACGGACAACGTGG----CACCATGCA---------------CATGCTAACCAATAAACGGGCATATCCGTATAAAGTCGGAATGATCAAGAGTAGCGATGCGGGTGTCGCATAGGCAGGCACTGCAAATATAGTGACAGCTTGCACAATTGCTCCAACAAATGTGATGATACAGGCCGGAAGACGAGCGTCGATCACATCGACATCCTGG------------------AGAA-------------AC----------TATTATCATGCATTTT---CACTTCAA------------ATAATT
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_254      149947 280 +   193288 tcttgaacaaaa-----------------------aaagacagaaccaa-cagaagttttgaataa--aacaagGAATACGA----TAACATGCATTGAAACAT-----TCATGCTGACCAAAATACGAAGATATCCATATAATGTTGGTAGAATGATCAGTAGTGACGCTGGAGTTGCATAAACTGGAACGGCGAATATTGTTACAGCTTGCACTATTGCACCAACAAACGTCAAAATGCAGGAAGGAAGACGAGAGTCGATCACATCAACATCCTAT------------------ATAAAAATTC-------AC----------TATT-TCATGCGTAAT---CACTCC-----------------ATT
i caePb3.Scfld02_254    C 0 I 9
s caeJap4.Scaffold54      102415 261 +   258924 gcaaaatcagaa-----------------------------gggttaaa-taata-------------aaataataaaatg--------caTGCA--------CAGGATTCACGCTAACCAATAGGCGCAAGTATCCGTAAAGTGTTGGCATGATGAGCAGCAACGAAGCTGGTGTAGCATAAACTAGCACGACAAATATCGTGCCTGCTTGAACAATTCCTCCAACAAAAGCCATAATGCAACCGGGTAGCCTCGCGTCGACCACGTCAACGTCCTAT------------------ATAGAAAGATTCAGAT-AA----------TAATACCATGCATTCT---CACTTCa-------------------
i caeJap4.Scaffold54    I 114 C 0

a score=3672.000000
s ce10.chrX               580204 13 + 17718866 CATTACACGTTTT
s caeRem4.Crem_Contig24   395979 13 -  1162296 cattccaatattt
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold630   5580456 13 + 20921866 CTTCACACTattt
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_254      150236 13 +   193288 CACTGCACGATTT
i caePb3.Scfld02_254    I 9 I 464
s caeJap4.Scaffold54      102676  9 +   258924 ----atacttttt
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21086385 27 - 21540570 I

a score=-3767.000000
s ce10.chrX               580217 15 + 17718866 TCTTT---TTTTTTGTGG--
s caeRem4.Crem_Contig24   395992 12 -  1162296 ---tt---atgtttttca--
i caeRem4.Crem_Contig24 C 0 I 11
s caeSp111.Scaffold630   5580469  1 + 20921866 -----------------a--
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      102685 20 +   258924 tcttttcaatcattttcaaG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      150249 464 +   193288 I
e cb4.chrX              21086385 27 - 21540570 I

a score=-12520.000000
s ce10.chrX               580232 58 + 17718866 GAGTATT-TTGTATTTTAAATGAAGTTTTAAAAACACAACCATGCAAAGTGGTGGTTAT
s cb4.chrX              21086412 49 - 21540570 AAACac-------ttcaataaaaattttcaaaactttgat--ttcatGCTGGGAGTGA-
i cb4.chrX              I 27 I 17
s caeRem4.Crem_Contig24   396015 44 -  1162296 CAATATA-TGTCATGCGATATAAA--CTCAAAA------------AGGGTGGGGGTTAG
i caeRem4.Crem_Contig24 I 11 I 21
s caeSp111.Scaffold630   5580470 28 + 20921866 -------------------aagaatttttgaaa------------ggggGAGAATCAAG
i caeSp111.Scaffold630  C 0 I 24
s caeJap4.Scaffold54      102705 55 +   258924 AAGTACAGTTTTTCGTGCCTAAAACATGCAAAAACATAGCGG---ATGGTTAGGTTAG-
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      150249 464 +   193288 I

a score=132282.000000
s ce10.chrX               580290 182 + 17718866 ------AGTCGTACCAAGACAACAAAGTAGACGAATCCGAGTACGAGAAACCCGATTCCAGCCCACGGAGTTGCCCAAATAATCACGAAAACTGTGGAGATGACGTTAAAGATAGTCATGACCATTGCACGAATCGAGTGCGGAAGTGTTTGGTCGATGGCTTCGATATCCTGTATTTAAATGAAAAT-----
s cb4.chrX              21086478 176 - 21540570 -------ATCGTACCAGGACAACAAAGTAGATGAGGCCCAGAACGAAAAATGCAATTCCAGCCCATGGTGTCGCCCAGATAATCACGACAACTGTCGAGATCACATTGAAAATTGTCATAACCATTGCGCGAATCGAATGTGGAAGCGTTTGATCAACAGCTTCAATGTCCTG-----AGGGAAAAAA-----
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig24   396080 177 -  1162296 ------TATCGTACCAGGACAACAAAGTAGACGAGGCCAAGAACGAAGAAAGCAATTCCTGCCCATGGTGTAGCCCAAATGATAACTACAACCGTCGAAAGGACgttgaaaattgtcataaCCATTGCACGGATTGACTGAGGGAGTGTTTGATCGATGGCTTCAATATCCTG-----TCGTGTaaaa-----
i caeRem4.Crem_Contig24 I 21 C 0
s caeSp111.Scaffold630   5580522 171 + 20921866 ------AATCGTACCAGGACAACAAAATAGACGGCGCCCAAAACGAAGAATGCAATGGAAGCCCATGGTGTGGCCCAAATGATGACGACGACTGTGGAGATGACATTAAATATAGTCATCACCATCGCTCTAATTGAGTGGGGAAGTGTCTGGTCGACAGCTTCGATGTCCTG-----AGA------A-----
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_254      150713 177 +   193288 ------AGTCGTACCAATACAATGAAGTAGATAAATCCAAGAAAGATGAATGCGAAACCGGCATAAGGTGTCGCCCATATAATAACTACGACAGTTGAaatgacattgaaaattgtcatGACCATCGCGCGTGATGAATGTGGTAAGGTTTGATCGACAGCTTCGATATCCTG-----TGATGATATT-----
i caePb3.Scfld02_254    I 464 C 0
s caeJap4.Scaffold54      102760 188 +   258924 AGCATGTTCCGTACCAGGACAACAAAGTAGACGAAGCCGAGTGCAGCGAACGCAAATCCGGCCCATGGTGTCGCCCAGATAACAACAACGACAGTTGAAATGACGTTGAAGATGGTCATCACCATGGCTCGAAATGAGTGAGGAAGGGTTTGGTCGACAGCTTCAATATCCTG-----TGCAAAAATTAACAT
i caeJap4.Scaffold54    C 0 I 2214

a score=-4170.000000
s ce10.chrX               580472 27 + 17718866 CAACACATAGAAA--CAGAGTT-AGCATTT--------
s cb4.chrX              21086654 30 - 21540570 GAACGTATACAAGTTTCGAG---AAGGGTTA-----TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   396257 32 -  1162296 aaaCGTAGACAAG-GTCAAGACAAGGGGTTA-----TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5580693 29 + 20921866 TAACATAGACAAG-TACAAGGC-AAAGATTA-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      150890 34 +   193288 TAACATATATGAA-ATTGAGGC-AGAGCTAGGGTTT--
i caePb3.Scfld02_254    C 0 I 585
e caeJap4.Scaffold54      102948 2214 +   258924 I

a score=-6217.000000
s ce10.chrX               580499 146 + 17718866 TTGC---------ATTTGTGGGGTTATGCGTT-TTTGGATATTTTTCGTGACAAGGACATGGCGGGTGAGTGTGTTGAG-AATGGAGTTCGGGTAGAAATGACAGAT---------CAGAAACCGTGCAAGATGTGGGGTAGGTCAATTGTTGAGAAAATTGAATT-
s cb4.chrX              21086684 150 - 21540570 GTGTGTTATCTTAAGGTAGCGTTTTTTGCTCAGTTTTTATA---CGGAACACAAGGACATGATGG---GGTAGAGAGAG-CGTTTGAAACGGG-caaaaagacagaa----aagaaCGGAAGACGTGCAGCAAACACTATTAATCATTTG----CAATATACTAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   396289 156 -  1162296 GTACGTCTTCC--AGTTACTGGTATAGGCTttactttcagaattttgcaGACAAGGACATGGTGGTGAGTCAGACATAGATATTTGATTCTGG----GAAGATAGAAGTCGGAGaaaaaaaGGCGTGCAGGGTAGACTGAgaataaaact----caaaattggaTT-
i caeRem4.Crem_Contig24 C 0 I 264
s caeSp111.Scaffold630   5580722 125 + 20921866 -------------ATGTATTGCT-TAGGAGTTATTTGAATG--------GACAAGGACATGGTG----GGTGGACAGATATTTCGGTTTCGAG-ATAGGAGACAGGA---------AAGAAGTTGTGCA--ATAAAATGGAGGCTAGACT----GGACGTTTTGATT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I

a score=-7519.000000
s ce10.chrX               580645 133 + 17718866 GATTTTTTTAAGCCAACCCTTCACAAAAAATACGCAAAATTTGAACTATCCAAATTGGCTAGGAAAATTaatcagggaaaaatttggattcatttaaaaatatttcccacag-ttcggtactccacctttaaaA
s cb4.chrX              21086834  81 - 21540570 CATTATTCT------------------------GAACAGCGTTAAGTTTCGGAACTGA--------------------------TGATTTCA--CAACAACAATTCGTAAAT-TGCAGTTTCTTATCTATAGAA
i cb4.chrX              C 0 I 25
s caeSp111.Scaffold630   5580847  62 + 20921866 AGTTATCTT------------------------ACCAGATATtctttttaggaa-----------------------------------------aaaaaatatccGGAAACATATAA------ACCAATAGT-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e caeRem4.Crem_Contig24   396445 264 -  1162296 I

a score=-225.000000
s ce10.chrX               580778 36 + 17718866 ATTTTGAGCATTGCCTGATTAAAATCTGGCTAATGC
s caeSp111.Scaffold630   5580909 10 + 20921866 -------------CCTGATTA-------------GC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e cb4.chrX              21086915 25 - 21540570 I
e caeRem4.Crem_Contig24   396445 264 -  1162296 I

a score=-2787.000000
s ce10.chrX               580814 52 + 17718866 CTGTTTAAAGTAAATTTTTCCCCAATCAAAAAGGCTCAACAATTGACTACCG
s cb4.chrX              21086940 52 - 21540570 ttttttttggcaaactTTGTCGTGAAAACGTGGATGCAACAGttaagaaatt
i cb4.chrX              I 25 C 0
s caeSp111.Scaffold630   5580919 12 + 20921866 CTCTCTTCACCA----------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e caeRem4.Crem_Contig24   396445 264 -  1162296 I

a score=54674.000000
s ce10.chrX               580866 262 + 17718866 CCAGAACAGATTTCAATAATTACCAGAATCGCAAAACATCCAATAGCGATGAGAACAATTGGAAAAATTGCAAAAGGCGTCGCATAGCTGGTAAAAACAACACAAGCGACTAGTTCAGAAAAGGTGAGTAAGAAATCGCCGATATTGTCCGGTAAACGCTCATCCACCACGTCCATATCCTGCCAAAA-TGTTTT----TAGT----AAATGCAAATTTGTTTTGTATCAGCT-----GTTAACGATTG--TTTGAA------CACATAGGTAAA-AAGAA--------------------------ACAA
s cb4.chrX              21086992 295 - 21540570 ctagaa-----atgaAGAATCACCAGGATAAAAAGACATCCAACAGCAATGAACGCTATTGCAAAAATCGAAACCGGTGTAGCATAAGTAGTGAAAACGACACAAGAGACTAGCTCGGAGAAAGTGAGCAAAAAATCGCCAAAGTTGTCCGGTAAACGCTCATCCACCACGTCCATATCCTGCGAAAC-TATCTTAATGTAAACCACAACCACCAA--TATATTCAATGATCCTAATAAGTAAGAATTC--TTGCTG------AACAGAGATAAACGACAAAGGGATTAAACTTGATTGAACATTGTACAA
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig24   396709 257 -  1162296 tcagaaaaaatatggaTAATCACCAGAATTGACAAACATCCAATAGCGACGAGAACAATCGGTAAGATTGCAAAAGGAGTAGCGTAAGTGGTGAAAACGACACAGGCGACTAATTCGGAAAAAGTGAGCAAAAAATCGCCAAAATTGTCCGGTAAACGCCCGTCCACCACATCCATATCCTGccaaacttatttt----tgaa------------------attgtgtaACCC-----GGTATGCATTTAGTTGCAGCATTATaacaaatataaa-aacaa--------------------------acaa
i caeRem4.Crem_Contig24 I 264 I 253
s caeSp111.Scaffold630   5580931 237 + 20921866 ---TGAACAGTCTTAATAATCACCAGAATTAAAAGACATCCAGTAGCGATGAGAACAATTGGTAAAATTGCGAAAGGAGTTGCATAAGTAGTAAACACGACACAGGTGACTAATTCGGAAAAAGTCAGCATAAAATCGCCAAAATTGTCCGGTAAACGTTCATCCACCACATCCATATCCTG-------TGTTTT----TAAT----------------AGAGTAGAAAGCTT-----CGTGAAaatt---tagaag------agaaaacatagACAACAT------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I

a score=-22984.000000
s ce10.chrX               581128 266 + 17718866 AGGTTGTGAGTGATTAGAGCTTGCATTATAACCGGACCCTTGTCAGTACGACTTGGTGTTTTTAGACTGTCTGTGGTAGAGCTCGTTCGGTTTTTTTTT---------TGAAATTTTGAAATTGTCCG----ATGGGTAGGAGTTTGGCCACTCACTATAACCAA--------------------------------------------TCATATAATTTCATAAT------------------------------------------------------GAGTGGATAAACTCGGAAAATGTCGGCCGCCGTGAAAACCTACCCATCGGAAAATGTTCAA------------------------------TGTTCTAAA---------------------------------------------------------------AACATATCCGGA-----CGCCCGATATGCCAG
s cb4.chrX              21087309 426 - 21540570 AAAGTGTAAATAACTGAATCGTGCATGTTA-----------------------TGCAATTTGTGAGGTTTTCGAG-------------GGTTTTTCGTTCAAAACTGGTGAAGTGTTCAATTCATCTGATActcgagaaaaaatatttctaatgtttttaaaggaggactccgaccaaaaatttttattgtatgaaaatgtgttaaaagttatctattttccgaatattattgcgaaaaaattcaaaagaaatccgaaacccccgaaaaacgctgttgaaaaggaaacaaattcaaaaaaaggt-gccgccgaggg------------acgaggatttgaattcccgcgcagtgagaagcctaggccacggcgcctgagagcattattttcaagtggccgacagtgttttttaacgttttttacctgtcggagataaaagcgaaacaaatccggaaaaattgtccggtaagaaag
i cb4.chrX              I 22 I 56
s caeSp111.Scaffold630   5581168 115 + 20921866 -AGGTtgaagtaagt-------------------------------------------ttttttggttttttgtg-------------gattttttGTTGCA------TGAA----CCAAATCGTGCG------------CATTAgcttttgtatttttgatgGA--------------------------------------------------------------------------------------------------------------------------------------------------GATGA------------GTGAAGTGTTCAATT----------------------------CGTCTTaga-----------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e caeRem4.Crem_Contig24   396966 253 -  1162296 I

a score=352.000000
s ce10.chrX               581394 37 + 17718866 ACTAAGCTTGTGGACTATTTAAGAGT---GTGAGTGAT---TG
s caeSp111.Scaffold630   5581283 35 + 20921866 --------tttggaatttttaaaagtttaaTGAGTAATCAGTA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e cb4.chrX              21087735 56 - 21540570 I
e caeRem4.Crem_Contig24   396966 253 -  1162296 I

a score=-8003.000000
s ce10.chrX               581431 188 + 17718866 GCTATTTTTAAAGTTATT------------GGTGTTCatttaaatgattttgaatttttttttctttttttttat------tttaGCAAACAGCCGCTCCTAATTTACTGAACTTATTTTTGTTCATGTCATGCATTT--------TCTAAACATCTGCAAAAGTTTCCTTTAA-----------AAAATTATCTGATTGAAATTGCTGAAAAATGGGAAGTCAA
s cb4.chrX              21087791 212 - 21540570 -tctttttttgaatttttttccttttcaatggcgtt--tttcggggatttcggatttttttcgaattttttcgcaataatattcggaaaatagat------aactt--ttaacacattttcatacaataaacacattttgatggaATAAAAGAAttgaccggagtccccctttaagtaTTGAAGCAAAGTTTTTACTCTGAG--tactgaaagtttgaaaatttc
i cb4.chrX              I 56 C 0
s caeSp111.Scaffold630   5581318 103 + 20921866 GTTatctaaaaaacttttttcac-----agAGCG--------aggtattttgaaatgttttc-------------------tgcagaaaaagGCT--------CTG--TGAATATActtttgt----------ca--------------------------------------------------aaaattcTTA--------------------TGTACAGTTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeJap4.Scaffold54      102948 2214 +   258924 I
e caeRem4.Crem_Contig24   396966 253 -  1162296 I

a score=-1028.000000
s ce10.chrX               581619  7 + 17718866 A-----------ACCAAA
s cb4.chrX              21088003 18 - 21540570 atggtATGCGAGACTCTA
i cb4.chrX              C 0 I 65
s caeSp111.Scaffold630   5581421  7 + 20921866 A-----------ACTATG
i caeSp111.Scaffold630  C 0 I 5
s caeJap4.Scaffold54      105162  7 +   258924 a-----------acaaaa
i caeJap4.Scaffold54    I 2214 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I
e caeRem4.Crem_Contig24   396966 253 -  1162296 I

a score=1820.000000
s ce10.chrX               581626 2 + 17718866 AT
s cb4.chrX              21088086 2 - 21540570 AT
i cb4.chrX              I 65 C 0
s caeRem4.Crem_Contig24   397219 2 -  1162296 at
i caeRem4.Crem_Contig24 I 253 C 0
s caeSp111.Scaffold630   5581433 2 + 20921866 AT
i caeSp111.Scaffold630  I 5 C 0
s caeJap4.Scaffold54      105169 2 +   258924 at
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      150924 585 +   193288 I

a score=64686.000000
s ce10.chrX               581628 71 + 17718866 ACCTTTCCGAATCGGTTCAAAATTCTTCCAAGTGGGGTTACGTCGAAGAATGCCATTGGAGATCTCATAAT
s cb4.chrX              21088088 71 - 21540570 ACCTTTCCGAATCTATTAAGGATTCGTCCAAGTGGTGTCACATCGAAAAATGCCATGGGAGATCTCATCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   397221 71 -  1162296 ACCTTTCCGAATCTATTGAGAATTCGTCCGAGGGGAGTCACATCAAAGAATGCCATGGGGGATCTCATCAT
i caeRem4.Crem_Contig24 C 0 T 11371
s caeSp111.Scaffold630   5581435 71 + 20921866 ACCTTTCCAAATCTGTTCAAGATACGTCCAAGTGGTGTAACATCAAAGAAAGCCATTGGTGAACTCATGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      151509 71 +   193288 ACCTTTCCAAATCTATTGAGGATCCTGCCAAGTGGTGTTACATCGAAAAATGCCATTGGAGACCTCATTGT
i caePb3.Scfld02_254    I 585 C 0
s caeJap4.Scaffold54      105171 71 +   258924 accTTTCCAAAACGATTCAAAATCCTTCCCAGTGGTGTGACATCAAAAAATGCCATAGGCGATTTAACAAT
i caeJap4.Scaffold54    C 0 C 0

a score=61398.000000
s ce10.chrX               581699 92 + 17718866 GTTTTCGAGAAGTGTAGCGTGAAGCAGTCTACTAGCACAAACCATGCCAAGCGCCATGATGATTGACGCAGCACAAACGGATGTTGCTGGAA
s cb4.chrX              21088159 92 - 21540570 ATTGTGCAAGAGGCCACCGTGAAGAAGTCTACTAGCGCGAACCATTCCTAAAGCCATAATGACAGAAGCCATACAGAcagaaattgctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   385921 92 -  1162296 GTTTCTGAGGAGCCCAGCATGTAATAGTCTACTAGCTCGAACCATTCCAAGCGCCAAAATGATAGAAGCGACGCATACAACcaatgctgaaa
i caeRem4.Crem_Contig24 T 11371 C 0
s caeSp111.Scaffold630   5581506 92 + 20921866 ATTCTTGAGGAGACCAGCGTGAAGCAACCGACTTGCACGGACCATACCCAGAGCCATAATAACCGAAGCTGCACACACAGATGTAGCTGAAA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_254      151580 92 +   193288 ATTTTTCAGTAGCCCACCATGAAGGAGTCTGCTAGCACGTACCATTCCGAGAGCCATGATCACAGATGCAGCGCAAACAGACGAAGCTTAAA
i caePb3.Scfld02_254    C 0 I 106
s caeJap4.Scaffold54      105242 92 +   258924 ATTGCTAAGCATACTAGAATGAAGCAACCTGCTTGCTCGGACCATGCCAAGTGCCATTATCACAGAAGCAGCGCATACAGATGTGGCTAAAA
i caeJap4.Scaffold54    C 0 C 0

a score=422.000000
s ce10.chrX               581791 1 + 17718866 A
s cb4.chrX              21088251 1 - 21540570 a
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig24   386013 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5581601 1 + 20921866 g
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold54      105334 1 +   258924 A
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      151672 106 +   193288 I

a score=546.000000
s ce10.chrX               581792 1 + 17718866 T
s caeRem4.Crem_Contig24   386014 1 -  1162296 t
i caeRem4.Crem_Contig24 C 0 I 41
s caeSp111.Scaffold630   5581602 1 + 20921866 t
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold54      105335 1 +   258924 T
i caeJap4.Scaffold54    C 0 I 38
e caePb3.Scfld02_254      151672 106 +   193288 I
e cb4.chrX              21088252 34 - 21540570 I

a score=453.000000
s ce10.chrX               581793 26 + 17718866 GAACTATATTAG-GCACAATAATATTT
s caeSp111.Scaffold630   5581603 27 + 20921866 tatttatatttgaactcaatcattttt
i caeSp111.Scaffold630  C 0 I 2
e caePb3.Scfld02_254      151672 106 +   193288 I
e caeJap4.Scaffold54      105336 38 +   258924 I
e cb4.chrX              21088252 34 - 21540570 I
e caeRem4.Crem_Contig24   386015 41 -  1162296 I

a score=0.000000
s ce10.chrX               581819 349 + 17718866 TTTGTGTCTGCTTTATGGCTTCCATTTCGGCGGAGGTTAGGCGCCTCCGCCGGTCGAGGCGCCTCAAACAGCCTCATGCCGCCACTAACGCCGCAATGCATCCGCATcaggggcgtgcggcaaatctcaaaacttgccgagctcgacaaatttgccgcacactcttGatccgcatgtataacgcggcgcggaaccccaaacttgtcggccgctaactgtctttggcactacgctgagcaAAACTACGGTGTGCAGCCGTAGCCTCTCTACGCAAACACCGGAGTTCACGCCAAAATGCATATCGTGGCGACCGGCGACGCGAAGTCCGGCCGGAGGAGAATAAATGATA
e caePb3.Scfld02_254      151672 106 +   193288 I
e caeJap4.Scaffold54      105336  38 +   258924 I
e cb4.chrX              21088252  34 - 21540570 I
e caeSp111.Scaffold630   5581630   2 + 20921866 I
e caeRem4.Crem_Contig24   386015  41 -  1162296 I

a score=91.000000
s ce10.chrX               582168 1 + 17718866 A
s caeJap4.Scaffold54      105374 1 +   258924 A
i caeJap4.Scaffold54    I 38 C 0
e caePb3.Scfld02_254      151672 106 +   193288 I
e cb4.chrX              21088252 34 - 21540570 I
e caeSp111.Scaffold630   5581630 2 + 20921866 I
e caeRem4.Crem_Contig24   386015 41 -  1162296 I

a score=273.000000
s ce10.chrX               582169 1 + 17718866 T
s caeRem4.Crem_Contig24   386056 1 -  1162296 t
i caeRem4.Crem_Contig24 I 41 C 0
s caeJap4.Scaffold54      105375 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      151672 106 +   193288 I
e cb4.chrX              21088252 34 - 21540570 I
e caeSp111.Scaffold630   5581630 2 + 20921866 I

a score=203687.000000
s ce10.chrX               582170 357 + 17718866 ACCTTGACCCATTCCCAACACAGCATAGATACCCAATCGAATTTGTGTCTCACTGCTACTTCCATTGCCTGACAGTGCGATTTCCTTGGCATCGTCTGACCATCTGGCAAGATACAAGTTACTGAACACTCCAAGCATACTACTGGCAACGTAAACTAGGAAAAAAACCAAAGCAATTTTGATTCCGATGGCTCGGAAATATGACATGTACACTTCAAATTTCACTTTTCCAGTTTCCACCGCTTCTTTTTCAATGAGCTGTGTTTTGGTTTGCTTGGGTGGTTCTGG---AGTCTTTTCTTTTGGCGATATCGCTCCAAGAAGTGACTCCTTCTCCTCGCTTTTTCCGATCGAACTGTG
s cb4.chrX              21088286 354 - 21540570 ACCTTGACCCATTCCCAGCATAGCGTATACTCCTAATCGGACATATGTTTCCCTAGCGCTCACATTTCCAGCAAGTGCAATCCGTTTAGCATCATCAGACCATCTGGCTAGATATAAGTTACTAAACACTCCTAGTACACTACTTGCAACGTAGACCAAGAAGAAAACCAGTGCAATCAGCATACCGATTGCGCGGAAATAAGACATatagatttcaaatttaactTTTCCAGTTTCGACTGCTTCTCTTTCAATTAACTGGGTTTTGGCCTGTTTCGGTGGTTCTGG---TGTcttttctttggt---ttttggTCCAAGGAGTGCTTCTTTCTCGTCGCTCTTGCCTGCGGGACTATG
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig24   386057 342 -  1162296 acattgtCCAATACCCAGTGCTGCATAGATACCCAACTGAGTTTTGATACTACTAGATGATCCGTTTCCAGATGAAGTTGTGGATTTCGCATGATCCGAAAGTTTGGCCAAGTAGAAGTTACTCATCAACCCGAGCATACTGCTACCAACATAAGCGGCAAAGAAAAGGATAGTGATGGAGATACTGATTGCGCGGAAGTAGGCGATATACACTTCAAACTTTACATTTCCTGTTTCAACTGtctctttttcaatcaa-------ttGTTCCTTTTC-----TTCAGT---TTGATCCTCTTCCGT---GATAGCTCCTAATAGTGCTTCCGTCTCCTCTGCCTTACTAGTAGGGCTGTG
i caeRem4.Crem_Contig24 C 0 I 10946
s caeSp111.Scaffold630   5581632 354 + 20921866 acCTTGACCCATTCCCAACATTGCGTAGATTCCGAGGCGAACCTGTGTTTCACTGGTACTCACGTTTCCAGCAAGAGCAATGCGTTTAGCATCATCTGACCATCTTGCCAGGTAAAGGTTACTGAAGACTCCGAGAATACTACTTGCTACATAGactaagaagaagagaacagCGATAGGGATTCCAATAGACCGGAAGTAGGACATGTAGATTTCAAACTTCACTTTTCCAGTCTCTACAGTTTCCTTTTCAATCAACTGCGTTTTTGCTTGTTTTGGAGGTTCTGG---TGTCTTTTCCTTGAT---TTTCGGTCCGAGAAgtgcttctttttcctcgttGTTGCCGATCGGGCTATG
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_254      151778 354 +   193288 accTTGACCCATTCCTAGCATGGCGTAAATTGCCAATCGTCCTTGAGTCTCACTTGTGCTCACATTGCCTgcttgagcaatttttttagCGTCGTCAGACCATCTGGCTAAGTACAGGTTACTGACCACTCCCAACACGCTACTGGCAATGTACACCAAGAAAAACATTATGGCGATAGGAATCCCAATAGACCGGAAGTAAGACATGTAGATTTCCAGTTTtacttttcctgtttccacAGTCTCCTTTTCAATAAGCTTGGGTTTGGCCTGTTTTGGGATTTCCAG---TGGTTGTTCTTTTGG---TTTCGCTCCGAGAAgagattctttttcttcattttttacaaaattgcCTTG
i caePb3.Scfld02_254    I 106 C 0
s caeJap4.Scaffold54      105376 354 +   258924 ACCTTGGCCCATACCAAGCAGGGCGTATATTCCCAAACGGATTTGTGTCTCTGATGTGCTCACATTCGCAGATCGAGCAATTTCTTTCGCATCATCAGACCATTTAGCGAGATATAGATTACTGAATACTCCGAGGGCGCTACTGGCGACGTACaccaaaaagaacaaaacagcAATAGCCATTCCAATCGCATGGAAGTAAGTCATGTAGACCGCAAACTTTACTTTGCCAGTTTCAACGGCTTCTTTCTCGATTAATTGCGTCTTTGGTTTCTTGGGCTGTGCTGGTGCTGGtttttcttttgc---attttctcctaaaagcgcttctttttcctcatttttgtgAACAATGTT---
i caeJap4.Scaffold54    C 0 C 0

a score=49844.000000
s ce10.chrX               582527 172 + 17718866 CGCTGTTTGTTCGTCCTTGTG------AAGTCCGTTGCGAATGATTTCAGCGTTTTTGTCATCGGTCTTCTCAATTTCTTGGCTCATTTGACTTTGGATTCTTTGCCGAATTGCAGGGCTTACTTGATCCAAGTCTCTGAGAAGTTCATTGACTTCTTTTGCTGGA-------AAAAAGTTAATT-
s cb4.chrX              21088640 168 - 21540570 ---------TGCTGATTCATTTCTCTGATGACCATTTGAAACGATCTCTGCATTTTTCTCGTCAACTCTGTCAATTTCCTGACTCATTTGGCTTTGAATTCTCTGACGAATTGAAGGACTGACTTGGTCCAGGTCGTGAAGAATCTCGTCGACTTCTTTAGCTGAA-------AT-GAACTGGTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5581986 172 + 20921866 AGCAGGTTGTTCTGACTTATT------GTGGCcgtttcgaataatttcagcGTTCTTCTCGTCGCTTTTATCAATCTCTTGACTCATTTGGCTTTGGATTCTTTGACGGATAGCAGGGCTGACTTGGTCCAGGTCACGAAGGATTTCGTCGACTTCCTTGGCTAAA-------gttgaaataaat-
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_254      152132 173 +   193288 TGGTGTTTGCTCTGGTTCATT------------ATTTCGAACCGTTTCAGAATTcagttcatcatttttgacaatttccTGACTCATCTgactttgaattctttttctgaatccgGGACTGACTTGATCCATATCGCGCAATATTTCATATACATCTTTGGCTGAAAAACAACATCTACATAGTT-
i caePb3.Scfld02_254    C 0 I 4
s caeJap4.Scaffold54      105730 160 +   258924 ---GACCGGTTCGTGCTTGTC---------TTCATTGAGAA------CTCCATCTTCTTTATgctctttttcagcgtcttGACTTATTTGGCTTTGTATTCTTTGCCTAATTGCTGGACTGACTTCATCCAAGTCTTTTAAAATTTCGTCAACTTCTCTggctgaa-------aa-ttattatttt
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   386399 10946 -  1162296 I

a score=-5857.000000
s ce10.chrX               582699 31 + 17718866 -TGAAA-----CAATATCCTTTCT------ATCA---AAATTTCCC
s cb4.chrX              21088808 13 - 21540570 -----------CAATG----------------------TAGTTTTC
i cb4.chrX              C 0 I 14
s caePb3.Scfld02_254      152309 28 +   193288 -CGAATCACAACAATG--------------ATGA---AAAACATTC
i caePb3.Scfld02_254    I 4 I 6
s caeJap4.Scaffold54      105890 46 +   258924 tggtaTGTTTCTaatgacgttttttttttaattaaacaaATTTCTC
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold630   5582158 23 + 20921866 I
e caeRem4.Crem_Contig24   386399 10946 -  1162296 I

a score=1488.000000
s ce10.chrX               582730 5 + 17718866 AACTC
s cb4.chrX              21088835 4 - 21540570 -ACTA
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold630   5582181 5 + 20921866 aactc
i caeSp111.Scaffold630  I 23 C 0
s caePb3.Scfld02_254      152343 5 +   193288 AACCT
i caePb3.Scfld02_254    I 6 C 0
s caeJap4.Scaffold54      105936 5 +   258924 AGTTC
i caeJap4.Scaffold54    C 0 I 1353
e caeRem4.Crem_Contig24   386399 10946 -  1162296 I

a score=16066.000000
s ce10.chrX               582735 23 + 17718866 ACAATCCTCTCCAAAACTAACAC
s cb4.chrX              21088839 23 - 21540570 ACAATCCTCTCCAAAGCTGATGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5582186 23 + 20921866 acaatccTCTCCAAAACTGATAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      152348 23 +   193288 ACAATCTTCTCCGAAGCTCACAC
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      107294 23 +   258924 acagtCTTCCCCGAAGCTGACAC
i caeJap4.Scaffold54    I 1353 C 0
e caeRem4.Crem_Contig24   386399 10946 -  1162296 I

a score=310039.000000
s ce10.chrX               582758 397 + 17718866 TTCTTCCCTTATGCTTTGACTCTTCTAACAAAAATTCTTCAAGGAACTCCGAAAATGCTCCATTACTATTCATAAGTTCTTGATATGTTCCCATTTCACTAATTGTTTCATCTTTGAGCACAATAACCTGGTCACAATGTTTCAGGTATGTCAATCCATGGGTCAACAGAACACGAGTTTTTGTTCCAAGGCATCCGGTGGCGGTTGCTGG--------------AAAAATCCTC---GTTTCTTATCGAATATTGGTGTAAAA--------CTCACAAATAACATTTTCAAATATATGTTTTCCGACATGTGAGTCCACTGCTGATAGTGGATCATCGAGAAGTACAATTTCAGCATTTTGATAAACTGCTCTGGCAAGTGAAACTCTTTGTTTCTGTCCTCCGGACAAGTTGATTCCCta--------
s cb4.chrX              21088862 393 - 21540570 TTCTACCCCGATGTTTCGATTCTTCCAACAAAAATTCTTCCAAGAATTCCGCGAATGCTCCATTACTGTTCATCAGTTCTTGATAGGTTCCCATCTCACTGATGGTACCATCTTTGAGCACAATCACTTTGTCGCAATGTTTCAAATAAGTTAATCCATGAGTAACCAAAATACGAGTTTTTGTTGCGAGGCATCCGGTGGCAGAAGCTTAaca-----------aaacatgaat---tttcctttttcgg-------aGAGAA--------CTTAcaaatgacattttcaaaaatgtgttttccaACATGTGAGTCAACAGCGGATAGTGGATCATCGAGCAACACAATTTCCGAGTTTTGATACACTGCTCTTGCTAGAGACACTCTTTGTTTTTGGCCACCAGATAAGTTAATTCCcta--------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   397345 396 -  1162296 ttCTTCCACGATGCTTCGACTCTTCCAGTAGGAACTCCTCGAGGAATTCCGCAAACGCTCCGTTACTATTCATCAGTTCCTGATATGTTCCCATTTCACTAATTGTACCGTTTTTGATCACGATAACTTTATCACAGTGTTTCAAGTATGTCAAACCATGTGTGACCAGAATACGAGTTTTTGTGGCGAGGCATCCGGTTGCAGAGGCTGAGAA-----------TAGAGTTTATAGATTAATTTTTTAAG-------ATTCAA--------CTTACAGATAACGTTTTCAAAGATATGTTTTCCAACGTGGGAGTCTACAGCAGACAATGGGTCATCCAACAacacaatttcagaattttgatataCAGCTCTGGCAAGTGACACTCTTTGCTTCTGACCTCCCGATAAGTTGATTCCctg--------
i caeRem4.Crem_Contig24 I 10946 I 7
s caeSp111.Scaffold630   5582209 393 + 20921866 TTCTTCCACGATGTTTTGACTCTTCCAACAAGAACTCCTCCAGGAACTCAGCAAAAGCTCCATTACTATTCATCAACTCTTGGTATGTTCCCATTTCACTGATAGTTCCGTCTTTGAGGACAATTACTTGGTCACAGTGTTTCAGATAGGTTAGGCCATGTGTTACCAAGACACGAGTTTTTGTTGCAAGACAGCCGGTAGCAGAAGCT----------------AAAACTAAAC---GTTTTTCAtgcaa-------agaaaacaaat---cttACAGATAACATTCTCAAATATGTGTTTTCCAACGTGTGAATCAACAGCAGACAATGGATCATCCAATAGAACTATTTCTGCGTTTTGGTAAACAGCTCGAGCAAGAGAGactctttgtttttgtccTCCAGACAAGTTGATTCCCTG--------
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_254      152371 399 +   193288 TTCTTCCACGATGTTTTGACTCTTCCATCaagaattcttccaaaaattcagcGAATGCTCCATTACTATTCATGAGTTCCTGATAAGTTCCCATTTCACTGacagttccatttttcaatactATCACTTGATCACAATATTTCAGATAATTCAATCCATGAGTAACGAAAACACGCGTTTTGGTCCCGAGGCACCCAGTGGCAGACGCTG---------------AAGATTTGAT---TTAATTCTAGTAA-----GTAGTAAGCAGGTGAACTCACAAATCACATTCTCAAAGATATGTTTCCCAACATGTGAATCAACAGCAGACAGCGGATCATCAAGAAGAACAATCTCCGATCTTTGATAAACAGCACGTGCAAGTGATATTCTCTGCTTCTGACCTCCAGACAGATTGATACCCTG--------
i caePb3.Scfld02_254    C 0 I 38
s caeJap4.Scaffold54      107317 412 +   258924 TCCTTCCGCGATGCTTGGATTCTTCCAGCAGAAACTCttccaaaaattcggaaaacgctCCGTTACTATTCATAAGTTCTTGATATGTTCCCATTTCGCTAATAGTTCCATCTTTTACCACGATTACTTGATCACAGTGTTTTAAATAAGTCAATCCGTGTGTTACAAGAATGCGCGTTTTTGTACTGAGAAAACCGGTTGCTGATGCTGAAAATAGTTGCAATTGAATTTTAag---taaaattatttaa-------ataaaa--------catacaaatgacattttcgaaaatgtgTTTGCCAACATGGGAATCAACCGCGGAAAGTGGATCATCAAGTAGAATGATTTCAGCATTTTGATATACAGCTCGAGCAAGCGATACTCTTTGTTTCTGGCCACCAGACAAGTTGATACCCTGTGAAAGAA
i caeJap4.Scaffold54    C 0 C 0

a score=-7845.000000
s ce10.chrX               583155 36 + 17718866 aattattaattaaaaaattatagatttttaGACA-----------CT------
s cb4.chrX              21089258 27 - 21540570 acctatttttca---------agGGCCGACAACA-----------AT------
i cb4.chrX              I 3 I 7
s caeRem4.Crem_Contig24   397748 22 -  1162296 aattatt--------------atagtcgccatca-----------at------
i caeRem4.Crem_Contig24 I 7 I 12
s caeSp111.Scaffold630   5582604 33 + 20921866 ACGTCTT--------------ATATTTATCTACAGGTTTGATGGTAT------
i caeSp111.Scaffold630  I 2 I 4
s caeJap4.Scaffold54      107729 38 +   258924 Gactattgtttttcaat----aaaattcaCAATA-----------TTAATACA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      152770 38 +   193288 I

a score=461488.000000
s ce10.chrX               583191 693 + 17718866  
s cb4.chrX              21089292 728 - 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   397782 723 -  1162296  
i caeRem4.Crem_Contig24 I 12 I 666
s caeSp111.Scaffold630   5582641 672 + 20921866  
i caeSp111.Scaffold630  I 4 I 5
s caePb3.Scfld02_254      152808 674 +   193288  
i caePb3.Scfld02_254    I 38 I 83
s caeJap4.Scaffold54      107767 625 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=422.000000
s ce10.chrX               583884 4 + 17718866 TGAA
s cb4.chrX              21090020 4 - 21540570 TAGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5583318 4 + 20921866 AAAG
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_254      153565 4 +   193288 aaag
i caePb3.Scfld02_254    I 83 C 0
s caeJap4.Scaffold54      108392 4 +   258924 tgaa
i caeJap4.Scaffold54    C 0 I 586
e caeRem4.Crem_Contig24   398505 666 -  1162296 I

a score=-7282.000000
s ce10.chrX               583888 19 + 17718866 CCTCTGATGTTTGTGTCTA--------------------
s cb4.chrX              21090024 23 - 21540570 CTTCGAG----------------AAAAACGGATGACTGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5583322 14 + 20921866 CTTCAAA----------------AGCAA-----GA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      153569 34 +   193288 ttttgaaattttttgtataacagaacagttt-taa----
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      108396 586 +   258924 I
e caeRem4.Crem_Contig24   398505 666 -  1162296 I

a score=910.000000
s ce10.chrX               583907 1 + 17718866 A
s cb4.chrX              21090047 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   399171 1 -  1162296 A
i caeRem4.Crem_Contig24 I 666 C 0
s caeSp111.Scaffold630   5583336 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      153603 1 +   193288 a
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      108396 586 +   258924 I

a score=872804.000000
s ce10.chrX               583908 1041 + 17718866  
s cb4.chrX              21090048 1042 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   399172 1050 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5583337 1037 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      153604 1041 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      108982  997 +   258924  
i caeJap4.Scaffold54    I 586 I 39

a score=-1493.000000
s ce10.chrX               584949 7 + 17718866 TAAACGG
s cb4.chrX              21091090 7 - 21540570 AAACCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   400222 7 -  1162296 aagacag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5584374 6 + 20921866 gaatca-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_254      154645 6 +   193288 aaacag-
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      109979 39 +   258924 I

a score=-96.000000
s ce10.chrX               584956 1 + 17718866 A
s caeRem4.Crem_Contig24   400229 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5584380 1 + 20921866 a
i caeSp111.Scaffold630  C 0 I 14
s caePb3.Scfld02_254      154651 1 +   193288 t
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      109979 39 +   258924 I
e cb4.chrX              21091097 0 - 21540570 C

a score=273.000000
s ce10.chrX               584957 1 + 17718866 A
s caeRem4.Crem_Contig24   400230 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      154652 1 +   193288 a
i caePb3.Scfld02_254    C 0 I 90
e caeJap4.Scaffold54      109979 39 +   258924 I
e cb4.chrX              21091097 0 - 21540570 C
e caeSp111.Scaffold630   5584381 14 + 20921866 I

a score=-1421.000000
s ce10.chrX               584958 71 + 17718866 GCATTAATGCTAAGAGCGTTAAGGAACACTCCAATTAAAGGTTTA--GTTAACAAATTTTTTGGAGCGTTCAT
s caeRem4.Crem_Contig24   400231 42 -  1162296 atctgatttttag----------------tCAAATCATGACTTTATTATTCACAA---------------TAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      154653 90 +   193288 I
e caeJap4.Scaffold54      109979 39 +   258924 I
e cb4.chrX              21091097  0 - 21540570 C
e caeSp111.Scaffold630   5584381 14 + 20921866 I

a score=-8747.000000
s ce10.chrX               585029 156 + 17718866 -TCAAGCACTCTTGTTTTTTTTTAAACA------AAAAGTTTTGaggtggtgtagtcgaattttttgtattgctttcttagactcaaaattgtctgaaaacaccg-agtttacgggtttctggc----tcgacccctct--------ctcgaaaattttggaagatggcgggaaaa-
s caeRem4.Crem_Contig24   400273 116 -  1162296 -TAAGGTATGCTTCTTAATTATTAGTCttctattgaaatttt---ggtcTGCTGG--------------------------------ATTA---TGAAGATATTGCAGCTTTTTCCAGACTTGC----ACGATTTCCGCCCGGtcagctcaaaaa---caaa---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      154743 148 +   193288 GCAAAACCGcttgttttatgttttgacGGTTCGTGAGGTTTTTCATGTTCACTAGTTGCA----------AAACTTCTTA---TCAAATCAGATTCAAGGcagtgaaatttttggaagtctAGCTGTGACCATT-------------ctcaaata---tgaaaaaagggaatgaaAG
i caePb3.Scfld02_254    I 90 I 14
e caeJap4.Scaffold54      109979  39 +   258924 I
e cb4.chrX              21091097   0 - 21540570 C
e caeSp111.Scaffold630   5584381  14 + 20921866 I

a score=-2849.000000
s ce10.chrX               585185 379 + 17718866 aatatttaagtttgtcatgaaaaatttcaccgcagcgcgtggaaaaatatcagcatttgcgcgtgactgtgtttgcacaaaatacaccgaggggtcgagccagaaacccgtgcgaatttcataat-gaaacttcggtaaaacttct---caaaaaaagctatggcggctcaaaaaatagccttaaattagttcaaatttgaaatttgaccaacttgtgtcgcagc---ggctgaaaacttaattttttgaaattgctatctaattttgggtatgcaagttgattatTGTAAAATTTTCTGAGTAAGGACTCCGACTTGGGATTGTTTTTGTAGACTTGTTTAAAATTTAAGATCATGGAAAAATCTTGTTAGGCCCCTATTCttat
s caeRem4.Crem_Contig24   400389 253 -  1162296 aagattcaaattt-ttatcaaaaat------------agtcaaaaatcctaagta--------cgattgagtttttatcgataat-------------------------tgagaa---catagtcaaaaattc-----aacttttcagcaaaaaaatcaatcaattttcaaaa-------------------aaattgaacatttcaaatatttgtacTGATGCCCGGACCGACCGTGCCGttggttgaaattt---tttaatt---ggcCCGTAG-------CATGTCCGGtttttttAACAAGAA----------GACttttttttG----------------------TCATAGCCAGGT---------------GTCTTGT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      154891  14 +   193288 I
e caeJap4.Scaffold54      109979  39 +   258924 I
e cb4.chrX              21091097   0 - 21540570 C
e caeSp111.Scaffold630   5584381  14 + 20921866 I

a score=-1735.000000
s ce10.chrX               585564 22 + 17718866 ----taaataaattaatctttaaaat
s caeRem4.Crem_Contig24   400642 11 -  1162296 AGTGTAAACTG---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      154905 15 +   193288 ----TAAATAGAtgaac------aa-
i caePb3.Scfld02_254    I 14 C 0
e caeJap4.Scaffold54      109979 39 +   258924 I
e cb4.chrX              21091097  0 - 21540570 C
e caeSp111.Scaffold630   5584381 14 + 20921866 I

a score=-2841.000000
s ce10.chrX               585586 21 + 17718866 aatttttaaaaaaGTCAAAAC-----
s cb4.chrX              21091097 20 - 21540570 AATTT------AAATAAAACCCAGGG
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   400653 10 -  1162296 ------------AATAAAATCC----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      154920 15 +   193288 aatcttc---aaaataga--------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      109979 39 +   258924 I
e caeSp111.Scaffold630   5584381 14 + 20921866 I

a score=-3313.000000
s ce10.chrX               585607  7 + 17718866 TTCATT-------G---
s cb4.chrX              21091122  4 - 21540570 TTC----------A---
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24   400663  7 -  1162296 TTC----------AAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5584395 14 + 20921866 ttcattattttacA---
i caeSp111.Scaffold630  I 14 C 0
s caePb3.Scfld02_254      154935  1 +   193288 -------------A---
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      109979 39 +   258924 I

a score=171823.000000
s ce10.chrX               585614 266 + 17718866 CTTACTCCAATATATCCATTTGATGGGGTGTCCGCAAAACAACTCAGAAAGAGTTCCAGTGCGGAGCATACATACGCGAAAACGTACAATGCTGCTCGGCATGAATGAATTTCGTATTCTTTATACAGGCGTCCGGTGATATAGTATCTCAACTCGGGAACTCCACAAACAACGACTAAAAGCCAGTACAACGTGATGACTCCCGATGTGATAATTCCTCGGTTTCTACAAGCAATTGTCAGAACAAGCGCAAGGCAAAATCCTGA
s cb4.chrX              21091126 245 - 21540570 CTCACTCCAATATATCCGTTAGAAGTAGTGTCTGCGAAACAGCAGAGGAAAAGCTCCAAGgatgagaaaatgaatgaaacgATGTACAGTGCAGCTCTGTACGGGTCAACATTGT---------------ATCCACTTAAATAGTATCTCAACTCGGGAACTCCACACACCACGACAAGAAGCCAGTACAAGGTGATGACTCCGGATGTAGTGATTCCCCGATTCCGGCATGCAATTGTCAACACAAGAACCAAGGAAAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   400670 266 -  1162296 CTTACTCCAACGTATCCATTTGACGGTGTGTCTGCGAAGCAACACAAGAAGAGTTCCAATCCAGCAAACGCAAACGATCCAATGTATAATGTTGATCGACACGGATCCACTTCATATTCGTTGTACAAGAATCCAGTTAGATAGTATCTCAGCTCCGGTACTCCACACACAACAACGAGTAGCCAGTATAAAGTGATAACTCCGGATGTGATTATTCCTCTGTTCCTACAAGCTATTGTCAAGACAAGGACCAGAGAAAAACCTGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5584409 266 + 20921866 GTCACCCCAATATAACCATTTGATGGTGTGTCCGCAAAGCAGCACAAGAAAAGTTCCAATCCGGAAAATGCAAATGCAGCAATGTACAAAGTAGACCTGCATGGATCGACTTCATATTCCTTGTATATAAATCCAGTCAGGTAGTATCGCAATTCAGGTACTCCACAGACAACAACTAGTAGCCAGTATAAGGTAATAACTCCTGATGTGATGATTCCTCTGTTTCTGCAGGCAATTGTGAGAACCAATGCAAGACAGAAACCTGA
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_254      154936 266 +   193288 CTCACCCCAACGTATCCGTTTGCAGGTGTGTCGACAAAACAGCATAAGAAAAGTTCCAAACTAGAAAATGCTATAGAAGCAATGTACAAAATTGCTCTTATGTGATCCACTTCATACTCTTCATAGATATAACCACTCAGGTAATATCTGAATTCGGGGATTCCGCATACCACAATTAATAACCAGTATAGTGTAACAACTCCTGATGTGATGATTCCTCTGTTTCTGCAGGCAATGGTTAACACGAGTGCTAGGCAAAATCCTGA
i caePb3.Scfld02_254    C 0 I 332
s caeJap4.Scaffold54      110018 266 +   258924 CTAACCCCAATAAATCCATTTGACGGTGTGTCGGCGAAGCAACAAAGAAATAGTTCCAGTGCTGAGAAAACATAAGATGCCACGTAAAGAGTTGATCGCAATGAATCCAACTCATACTCCTTGTAGATAGTACCATCTAAAACATATCTCAGCTCAGGAATCCCTGCGATCACCACCAGAAACCAGTAGAGTGTGATCACTCCCGACGTGATAATTCCTCGGTTCCTACATGCAATGGTCAGTACCAGCGCCAAACACAATCCTGA
i caeJap4.Scaffold54    I 39 C 0

a score=153303.000000
s ce10.chrX               585880 514 + 17718866  
s cb4.chrX              21091371 659 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   400936 403 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold630   5584680 443 + 20921866  
i caeSp111.Scaffold630  I 5 I 406
s caePb3.Scfld02_254      155534 405 +   193288  
i caePb3.Scfld02_254    I 332 C 0
s caeJap4.Scaffold54      110284 419 +   258924  
i caeJap4.Scaffold54    C 0 I 5503

a score=-3234.000000
s ce10.chrX               586394  9 + 17718866 AATA-CATTT-----
s cb4.chrX              21092030 10 - 21540570 tatgacAATT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   401339  9 -  1162296 Taca--aattt----
i caeRem4.Crem_Contig24 C 0 I 784
s caePb3.Scfld02_254      155939  9 +   193288 -----taatt-attt
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5585123 406 + 20921866 I

a score=29.000000
s ce10.chrX               586403 1 + 17718866 T
s cb4.chrX              21092040 1 - 21540570 T
i cb4.chrX              C 0 I 171
s caePb3.Scfld02_254      155948 1 +   193288 c
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5585123 406 + 20921866 I
e caeRem4.Crem_Contig24   401348 784 -  1162296 I

a score=37.000000
s ce10.chrX               586404 4 + 17718866 GACT
s caePb3.Scfld02_254      155949 4 +   193288 tatT
i caePb3.Scfld02_254    C 0 I 2050
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21092041 171 - 21540570 I
e caeSp111.Scaffold630   5585123 406 + 20921866 I
e caeRem4.Crem_Contig24   401348 784 -  1162296 I

a score=0.000000
s ce10.chrX               586408 956 + 17718866  
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21092041 171 - 21540570 I
e caeSp111.Scaffold630   5585123 406 + 20921866 I
e caeRem4.Crem_Contig24   401348 784 -  1162296 I

a score=30760.000000
s ce10.chrX               587364 125 + 17718866 CTCACCTCATAATCGCTTCCACACACCAGTTCACGAACTAACGGGAACATTTCTTAAT-TGGCTCGGTTCGG---TCTTTTTTCTTAATTGTTGGACATCAAACTTTACATTCCATTTGTTACCTGAAA
s cb4.chrX              21092212 107 - 21540570 CTTACCTCGTTATCGCTTCCGCACACTAGTTCACGAACAAGCGGCagcattttttg---taattttatcAAG--ATTTCGTTCCTTA-----------------TCAACTTTCCATTTGTTACCTGAaa
i cb4.chrX              I 171 C 0
s caeRem4.Crem_Contig24   402132 112 -  1162296 cTCACCTCGTAATCGCTTCCGCACACAAGCTCACGAACTAACGGCAGCATTTCTTGATTAGGTTCTTTCGtgtcgtttcttttcttt-----------------tcaactaTCCATTTGTTAcctgaaa
i caeRem4.Crem_Contig24 I 784 C 0
s caeSp111.Scaffold630   5585529 108 + 20921866 CTCACCTCATAATCGCTTCCACACACAAGCTCACGCACTAACGGTAGCATTTTCTAGT-TGTTTCTTTCGat---attgttcttttt-----------------tcaactatcCATTTGTTACCTGGAA
i caeSp111.Scaffold630  I 406 I 2054
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I

a score=-137.000000
s ce10.chrX               587489 1 + 17718866 A
s cb4.chrX              21092319 1 - 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   402244 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 I 2673
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5585637 2054 + 20921866 I

a score=130.000000
s ce10.chrX               587490 37 + 17718866 TCTTGTTTGAAAATGTTTAATTTTCGTAGAAAAGTTA
s cb4.chrX              21092320 29 - 21540570 c--------aagatttttgaaacttcaagaTAAGTTA
i cb4.chrX              C 0 I 2689
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5585637 2054 + 20921866 I
e caeRem4.Crem_Contig24   402245 2673 -  1162296 I

a score=0.000000
s ce10.chrX               587527 282 + 17718866 ACTTCAAAACAGTGTTTAAAACTTAATTGTTGAATCAAAAAGCGCCGGAAACAGAATAGAAAATTGTCCGATAAGAAGTAACTATTCACATGAAACTCACGAAAGAGTTGACACCTTGGAATTTAAATTTGGGACTGACTGCAATTTTCTTGTTCAGGAAACCAAAAAAATCTATACTGATATGTCCAGTCAAGTATACATAAAAAGCCGTGAATAAAAGCAGAAGAAGCAGAGAAGAGGCAGATGGAAGAAAAGCTTAACGGCATTACCCCGCAACATTGT
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21092349 2689 - 21540570 I
e caeSp111.Scaffold630   5585637 2054 + 20921866 I
e caeRem4.Crem_Contig24   402245 2673 -  1162296 I

a score=4137.000000
s ce10.chrX               587809 224 + 17718866 GGAGGTGTGAAAAAAGTGATAGAGACGTGT-----------GGTAATGCTGACAAATATCTTAT-----------------AGAACAGAACAAG--CCCATGCTAGTACAGAAAAACCAACGTGTGCGTAGAG---AAAGAAAGCGAGGGGGGGGGGGAGAAATCAAAAGGAAAA--------CCCGCAA-----------TTCAATGTTTGTTTTAGTATTTCAGTCTAGCCAATTTTTATTCCTTCGTACAAATACACA----AACTTGATATGGAAA
s cb4.chrX              21095038 271 - 21540570 GGAGGTGTGAAAAAAGTGATATTGACGAGGCATCAGCGATAGAAAATGATGACAAATATCTTATTTCGCTTTGGTTGTTTGTGAGCAGAATAAGAACCAAGgcttttgatgaaaaa-aaaagtgtgatcAGCACTTGGAGAAACCgagaattgaaagaaaaaaaagaaagggaaGAAAGAATTCCCACTAAAGAACCAATTTCTAATGTTTGTGTTTGCATGAATGTCTAGCCAA--TTCATTC------ACAAATACAAAGTATAATGTGATGTAAAAA
i cb4.chrX              I 2689 I 2059
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5585637 2054 + 20921866 I
e caeRem4.Crem_Contig24   402245 2673 -  1162296 I

a score=0.000000
s ce10.chrX               588033 2574 + 17718866  
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21095309 2059 - 21540570 I
e caeSp111.Scaffold630   5585637 2054 + 20921866 I
e caeRem4.Crem_Contig24   402245 2673 -  1162296 I

a score=217.000000
s ce10.chrX               590607 18 + 17718866 TGAAACATAGCAGGT-----TGT
s caeSp111.Scaffold630   5587691 23 + 20921866 TGAAACACAACAAATGCCGATTG
i caeSp111.Scaffold630  I 2054 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21095309 2059 - 21540570 I
e caeRem4.Crem_Contig24   402245 2673 -  1162296 I

a score=19628.000000
s ce10.chrX               590625 300 + 17718866 GCTCAGTATTTAAAGAGTGAAAAACGG----------------GATAAATGTGCGAAAT-GATGAGTGCGCGAGAAAATAAAAGGGAGAGATGACT-CTGCAGTGAGATTGCCGAATGAAAATCTCCCCTTTCTTTTGATTTTCGCTCAGCAGCCAACG---AAATTCGGTTCGATAATTCCATCGGGGGGGGGGGGGGCGAGGTTACTCATACTTGACAAAAAAATTGTTT----------------------------CGAAAAGATGAAGGAAA--AAGTCTTGAGAT--GCAGAGAGAAAGCGCTCCCACTTGGCATTATTTGTTTGACGGTGGGAGCGAGAGAAAAAC
s caeRem4.Crem_Contig24   404918 265 -  1162296 gctaaaTATTTGAGGAGTGAGAAAAAG--------------CGGATAAATGTGCAAAAT-GATGAGTGCGcgagaaaacacaa---aaagatgACTGCTGCTGTCTGCCTGCGGATGAAAAA--TCCCCCTTTTTT-----------CCGCAAGCGCctca-aaattcgttttgatAATTCCATCAAAA-----------GAGGTTACTCATACTTGACGAAAA---TGTTT----------------------------CGAGGAG----GGACAA--AAATTCGGGGGTCGGGGTAGAAAGAGCGCTTCCACTTGGCATTATTTGTTTGACAGTGGG--------GAGAGC
i caeRem4.Crem_Contig24 I 2673 C 0
s caeSp111.Scaffold630   5587714 283 + 20921866 GCTCAATATTTGACAAgtgaggggggggggggggggggggagggATAAATGTGCAAAATGGATGAGTGcgcaagagaagaaaa-----------------------tcttg-----ggcaaa--tcctttttcttcaggcACCCA--CCGCAAGTCACACACAAATTCGTTTTGATAATTCCATC----------------GGGTTACTCATACTTGACGAAaa---tgtttctctctctctttctctctttctttgtcccgagaaa----agaaaatgagaactgAGGGC------------ATCGCTCCCACTTGGCATTATTTGC---ACGGTgggagaagaatgaaagc
i caeSp111.Scaffold630  C 0 I 1725
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21095309 2059 - 21540570 I

a score=1303.000000
s ce10.chrX               590925 28 + 17718866 GAGAAAAGACAAAACACAACTTTTTTGG
s caeRem4.Crem_Contig24   405183 27 -  1162296 -AGAAAGAATAAAAAGCTAtttttttAg
i caeRem4.Crem_Contig24 C 0 I 2401
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21095309 2059 - 21540570 I
e caeSp111.Scaffold630   5587997 1725 + 20921866 I

a score=0.000000
s ce10.chrX               590953 2114 + 17718866  
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21095309 2059 - 21540570 I
e caeSp111.Scaffold630   5587997 1725 + 20921866 I
e caeRem4.Crem_Contig24   405210 2401 -  1162296 I

a score=867.000000
s ce10.chrX               593067 131 + 17718866 ATTGTTTCCTATTATCTTGATTTGTTGTTTTTCATTCTGCCATTTCCTTCGTTTTCATA----ACCCTATCCATCTTATTCTTTTTTATTAGCCCCGGAG------CCCCGTTCTCACATTGACATTCCA---------------------TTGCCTGGAAA
s cb4.chrX              21097368 158 - 21540570 ATTGCTTCCAGCTTTCCcggtttcgaattttccggtgtttcatt--ctccgtttttgtacgacactttttatattttaatctttttta--atctttgatgatattctctctttctctaaccGGAGTGCCAAAGGACACTCAATCTTCTAAATTCCTTGGGGT
i cb4.chrX              I 2059 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeSp111.Scaffold630   5587997 1725 + 20921866 I
e caeRem4.Crem_Contig24   405210 2401 -  1162296 I

a score=875.000000
s ce10.chrX               593198 4 + 17718866 TCCA
s cb4.chrX              21097526 4 - 21540570 TTCA
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630   5589722 4 + 20921866 TTCA
i caeSp111.Scaffold630  I 1725 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeRem4.Crem_Contig24   405210 2401 -  1162296 I

a score=10043.000000
s ce10.chrX               593202 51 + 17718866 TCCAAACTAACAT-ATTTTGCAGGTGCGCACACACTAATTACCTTCTAAGTC
s cb4.chrX              21097533 46 - 21540570 GACAAACCGACATGAAAT-GCAGGTGCGTACATTCTAATTACTTTCC-----
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   407611 52 -  1162296 tcaaaactgACACCATTTCTCAGGTGCGCATACACTAATTACCTTCTAAGTC
i caeRem4.Crem_Contig24 I 2401 I 9
s caeSp111.Scaffold630   5589726 43 + 20921866 TCCAGAGCGA----ATTTTGCAGGTGCGCACACACTAATTACCTACT-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I

a score=-1591.000000
s ce10.chrX               593253 19 + 17718866 CAAAACGCGCGAGAGCGGC--
s cb4.chrX              21097579 14 - 21540570 -----CATGGAATAAAGGG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630   5589769  9 + 20921866 ------------GAGAGGAGC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e caeRem4.Crem_Contig24   407663  9 -  1162296 I

a score=26792.000000
s ce10.chrX               593272 115 + 17718866 TGGGGGATCTATCTCCAGTTGTTATCTAGTGAGAATGGGTAAATAGCCAAAACGAGAGC------------------GGGAAGAAAAGGAGAAGAGA-----AATAGAG-----------AGACACAACAACGTCACAGAGAGCGAGAG
s cb4.chrX              21097593 147 - 21540570 TAGGAGATCTATCTCAAA-TGTTATCTAGTGCGAATGAGTAAATTGCCAAAATG-GcaagaagagagaagagaaaacaagacgagatagaagagggattgcggagacggaaaagaaCATTGGACGCAACCACGGTGCTGAAGGCGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   407672 124 -  1162296 TAGGAGATCTATCTCCAGTTTTTATCTAGTGCGAATGGGTAAATAGCCaaaatgagcgagaggaggagagagagaa-aagaggaaaaagaaacgaga-----gagagag-----------ggacg-----acgtcatagagagcga---
i caeRem4.Crem_Contig24 I 9 C 0
s caeSp111.Scaffold630   5589778 127 + 20921866 -----GATATATCTCCAATTGTTATCTAGTGCGAATGGGTAAATAGCCAAAAAGAGCGAGAAGAC------------GGGAGGaaacagaagagaga-----gagagagagggtaGAGTTGGACACAACGACGTCATAGAGGCCGAGGG
i caeSp111.Scaffold630  C 0 N 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I

a score=-4661.000000
s ce10.chrX               593387 457 + 17718866  
s cb4.chrX              21097740 527 - 21540570  
i cb4.chrX              C 0 I 98
s caeRem4.Crem_Contig24   407796 473 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold629   3417257 385 - 33334924  
i caeSp111.Scaffold629  N 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I

a score=-6583.000000
s ce10.chrX               593844  56 + 17718866 TATTG--------------------------AACCCT----------A--GTAAC----------------------------CATT----AA-------ACAATTTCT------ATTATCCTCTATGA-------------------------------CAAAAAACGA
s caeRem4.Crem_Contig24   408275 169 -  1162296 TATTGGTTTCTGATTGGGTTTTTTGGTTTGGAACCTTTTCGAGTAAGATTATAAAATTATCCGCTTTTTATATCGcataaaaacatttaaaaatatgtGCAAAACTCCGTTCGCCACTCCTCCTtatca-gtttctcttctccccCTTTTCTGCCAACCGCAAGAATCGA
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold629   3417642  90 - 33334924 -------------------------------TACCTT----------ATCATAACATCTGCCG---------TTGcgt-----tatttgaaaa-------aaaattcgg------aatcttCTTTACTATGCGGGCTTTCTTTCCCat------------caagaaaaga
i caeSp111.Scaffold629  C 0 I 77
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21098267  98 - 21540570 I

a score=-1093.000000
s ce10.chrX               593900 44 + 17718866 CGTA-----TTTTCTTGATTTG------------GTCAATTTATCGATTAG------------------AAAAATGATA
s caeRem4.Crem_Contig24   408444 79 -  1162296 AGAacatgtttttcttattttacgAGAGGCAGTTGTTGCTTTTTCGTTGCGtcttttcgtttattttctgaaacttatc
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21098267 98 - 21540570 I
e caeSp111.Scaffold629   3417732 77 - 33334924 I

a score=-975.000000
s ce10.chrX               593944 2 + 17718866 CA-
s caeRem4.Crem_Contig24   408523 2 -  1162296 -TA
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold629   3417809 2 - 33334924 ct-
i caeSp111.Scaffold629  I 77 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I
e cb4.chrX              21098267 98 - 21540570 I

a score=-3822.000000
s ce10.chrX               593946  7 + 17718866 --------------------------TTTGTTG--
s cb4.chrX              21098365  9 - 21540570 --------------------------tcTGATGAT
i cb4.chrX              I 98 C 0
s caeRem4.Crem_Contig24   408540  7 -  1162296 --------------------------CTTCATG--
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold629   3417811 34 - 33334924 ttctttttttctatcaaaaaatctcttctTATC-C
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      110703 5503 +   258924 I

a score=32914.000000
s ce10.chrX               593953 103 + 17718866 TTTCAGGCAAATTTCACTACCGGA---AA-------ATGCCAACTACTCGAAGTGCAAATCATCCAGCTCCAAAAAGAGCGATCTCACCGGATAGTGATGACGGAGAAGAGGT------
s cb4.chrX              21098374  96 - 21540570 TTACAGCT---------TCCCAGA-CGGA-------ATGCCAACAACTCGCAGTGCAAATCAACCGGCTCCAAAACGTGCTCTGACTCCCGACAGTGACGACGGCGAAGAGGT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   408547 109 -  1162296 TTTCAGCT---TTTGGGTTTCGGA-AGAACTTCACGATGCCAACTACTCGTAGTGCAAACCAACCGGCCCCAAAGAGACCTCTCACTCCGGATAGCGACGATGGCGATGAGGT------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3417845 101 - 33334924 TTTCAACA---CTTGATTTTCAGG--GAA-------ATGCCGACTACTCGTAGTGCAAATCAGCCTGCTCCAAAGAGAGCTTTAACTCCGGATAGTGATGACGGAGAGGAGGA------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      116206 106 +   258924 tttcagaaatagcTCATTGTGAACAAGAA-------ATGCCTACCACACGCAGCTCAAATAGACCGGCACCAAAACGATCTGTTTATCCGGATAGTGATGAC------GAGGTAATTTT
i caeJap4.Scaffold54    I 5503 I 130
e caePb3.Scfld02_254      155953 2050 +   193288 I

a score=-37028.000000
s ce10.chrX               594056  73 + 17718866 -----GTGTTTAGCAAATCAACATA-----------------------------------------------------------------------------TTAAA-------------------------------------------------------ACCAATGTGtaa-----------------aaaaataatttatc------------------------------------------------aaatataattaC---TCAGAA-------------------------------CTAT
s cb4.chrX              21098470 189 - 21540570 -----ATAATTACTAAAACCGtaga-----aaacacttttt-----------------------------------------------------cactgcttttaaGCTTAAAA-------GCATCT-------AATGATGTTGCATGAACACTCATTTCACATTCATGCACAATTCATgatatttcggaaaaaaattttctat------acGTTTACGTTCTTT--CAATCAGAGTGGTATCT---------AATGATAGCTAT-TAGGGAAA--------------ACTTAA-----------TTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   408656 306 -  1162296 GAGCAATAATCAATAATAGTGGGGACCAAGAAATTCATTTTGGTTACATGATTTACCTACAGTGTCTTATCTGCCTAGTACTCTTGTAGGACGAGATTGGCTATAAGTATAAAATGACTTGACATCTTCAGAAAACtcaagaaatatcaaaatttgcaACTAACCCGTCAATAAGAGACGATTCTTTG---AACCGTTATCGGTCAGCTGAGGATTATGTACCGCAACCGCCAATACGATAACTAGATTAGACAATTTTAGCTATGTAGCAAAAGAAAGCCGATGACTACCCAAAGCGAAAAgcgtttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3417946  43 - 33334924 ----------------------AGA----------------------------------------------------------------------------TGTAAG------------------------------------------------------------------------------------AAgaatttt-----------------------------------------------------aatatttattatttctcgcaa-------------------------------tttt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      116312 130 +   258924 I

a score=52585.000000
s ce10.chrX               594129 354 + 17718866 AAAAA----------CAACATTA--CAGGACGATTTC-AAATCAAAAAGGACCCCAT---CTGGTCGTGGACGTGGT---GGCCGCGGACGAGGACGC---GGCCGTGGCCGCGGAGGAGCCACCGCCGCTGGGGCAACCGTTGAAGGTGGTGAAAGCA---CCCGAGGAGGAGGAACTGGCCGTGGT------GGGAGAGGACGTCCACGTGGAT-CCAAGAATT-CAGAC-----GGCGGAGCAGGAGGTCCGCCAGCCAAGCGTGGAAGAAAGAAGAAGG---CAAAGTCGGAGTCTGAAGATGAGG---------CTGAGTCGGACCATCTTCATGACGAGCTGAAGAAGTGTCTGTCGATTTTGAAAGAGTTTGAGAAAAGCACACATGATGTAAGTTT
s cb4.chrX              21098659 367 - 21540570 ACCAAA---------TGATATTT-ACAGGATGACTTC---GTaaaaaaa----CCAA---GCGGCcgtggacgtggt---ggtcgtggacgtggacgtggaggccgtggacgtggacgtggaGGCGGTGCCACAGCCA---------GTGACGAGAGCTCATCCGGAGAAGGAAGCTCCGCACGTGGCGGTAGAGGACGTGGTCGCGGAAGTGGTCGCGGAGGACG-TGGACGTGCCGCAAAAGACGGCCAACCATCAGCAAAGCGTGGACGCAAGAAGAGAGCCGCTGCCTCGGACTCTGAAGACGAAG---GAAACGTTGACTCGGACCACCTACAGGATGAGTTAAAAAAGTGCTTAAAACTTCTTAAAGAATTCGAGAAAGGCAGCCACAGCGTGAGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   408962 364 -  1162296 attaaaaaaaaatcctaaaattt--caGGACGACTTC---GTCAAGAAG----CCGA---gtggacgcggacgtggtggcggtcgtggacgtggacgc---ggtcgtggtcgtggacgaggtggCGCCAGTGCCGCTA---------GTGGCGAGAATAAGCCTGAAGGCTCCAGCTCCACTCGTGGT------GGACGTGGTCGCCCACGTGGAT-CCAAGAACGCTGAAC------CAGGAGATGGACAACCACCAGCAAAACGTGGACGCAAGAAGCGAGCTCCAAAGTCGGATTCTGAAGACGAGG---GAACAAATGATTTGGAGGATCTCGGCGAAGATGTCAAAAAGTGCCTTGGGCTGTTGAAGGAGTTTGAGAAAACCACCCacaatgtgagttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3417989 339 - 33334924 ---------------caatattt--aagGACGATTTCCGAGCGAAGAAA----TCGACTCGCGGACGCGGAGGTCGA---GGACGTGGACGTGGTCGC---GGACGCGGTCGTGGAGGTGGAGGTGCCTCCTCTTCTA---------GCGGAGAGGATG-----GCGAGAGCAAGCCGCGTGCAAGCC-GTGGAGGACGCGGTCGCGGGAGAGGTA-CTCGGAATC-CGGAC--------------GGCGCTCCACCAGCCAAGCGTGGACGCAAGAAGAAGG---CAAAGTCCGACTCGGAGGATGATG---ATACCGGAGATGTTGGTGTATTGAGCGATGAGCTGAAGAAGTgcttgaaagttttgaaggaATTCGAGAAGACGTCTCATGAGGTAAGTT-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      116442 288 +   258924 ---aaa---------aaatgtttttcaggaTGAAATT---GTAAAAAAG----CCAT---CGGAACGTGGTCGTCGT---G---GCGGAAGCAAACGT---GGCCTTCCCCGAGGAGCCGG--------------------------ACGGGGAAA-------------------------------C------GGACGTGGAAGACCA--------CCAAAGTCT-TCAAC----------TGATGGAAAACCTGTGGCAAAGCGTGGAAGAAAGAAGGCGA---ACAAATCTGATTCCGAGGAAGAGGACAACAACGTTGAGACCGATCATTTCACTGATGAGCTCAAAAAATGCGTCACGATATTGAAAGAGTTTGAGAAAAGTGACTATGAGGTTGGTAT
i caeJap4.Scaffold54    I 130 I 139
e caePb3.Scfld02_254      155953 2050 +   193288 I

a score=-10391.000000
s ce10.chrX               594483 69 + 17718866 TTTTTTTGGTGAAAGAGCTTCTATATTAAAAAAAACTATGGTCAGAAATTAACCTTTCTGTTTCTGTCA--------------
s cb4.chrX              21099026 32 - 21540570 ----------------GATGTGATGTTGTATAT---------------------TTTCCTtacttgtca--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   409326 37 -  1162296 ttt-----------aataATCGATTTTAAAAAT---------------------CCAGGATGCTAGTTA--------------
i caeRem4.Crem_Contig24 C 0 I 63
s caeSp111.Scaffold629   3418328 41 - 33334924 ---------------------GGCTGGAAAGGA---------------------TTAGGACAGTAGCAGAATGGGGATAAGCC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      116730 139 +   258924 I

a score=-1673.000000
s ce10.chrX               594552 67 + 17718866 CAAAATTTTAAAACCACTTAATATTAATCTAGATTATTTTCAATTTATTATACGACGCACAATTTTT
s caeRem4.Crem_Contig24   409426 62 -  1162296 GAAAAACTTGTA-----ttcagatttattttcaaaatccttgACTTTTAAATTATTCAGCAGCTCTG
i caeRem4.Crem_Contig24 I 63 C 0
s caeSp111.Scaffold629   3418369 48 - 33334924 -------------------AAGATCAGCTTTGAGTCTTCTAACATCATGATACACCCAATGACTCAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      116730 139 +   258924 I
e cb4.chrX              21099058  0 - 21540570 C

a score=-11552.000000
s ce10.chrX               594619 89 + 17718866 AATCAATCTTGGAAACTATAT-------CAAATGAAATAATTTATGTTAAAATTGAAAGTTGAAACTGAAGCAGAACAA--TCTAGAATTACACAATG
s caeRem4.Crem_Contig24   409488 51 -  1162296 CATAATTTCCA---ACTATAC-------CTAGGTTCATAATT----------------------------------CCAGTTCtaaactcgaatt---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3418417 30 - 33334924 AATGATTCCCA------ATAC-------CAAA--------------------------------------------CCA--TCTGATCT---------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      116869 58 +   258924 agtcgattgaaaacaaaatattatcctgcaaacaaaaaaaattatgttt---------------------------ttt--ttcaaa-----------
i caeJap4.Scaffold54    I 139 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e cb4.chrX              21099058  0 - 21540570 C

a score=105540.000000
s ce10.chrX               594708 416 + 17718866 TGTTTCAGTCCTTCACATTTCCATTCCGTAAGCCAGTTGACGTTGTCCTACTTGGCCTCACCGACTATCACGAGGTCATCAAGAAGCCAATGGACATGTCAACCATCAGAAAGAAGTTGATCGGCGAGGAGTACGACACTGCAGTTGAGTTCAAGGAAGACTTCAAATTAGTTAGT---------TTTA---------AGATTTGT--T----------------------AAAAGTTGATATTA-ATTTTTATTAAC-----------TGCAGATGATCAACAATTGTCTCACTTACAACAATGAAGGGGATCCAGTAGCTGATTTTGCTCTTCAATTCCGCAAAAAATTTGCTGCCAAATGGAAGAAGGAATTCCCAGAGGACGGAGACAGTTTTGGACAGGAGA---AAGGTGA---AAAAGAAGGAAGTGACAA------Tgaagatgacgaggaagaggttgatgaaaaagaaaagg---
s cb4.chrX              21099058 413 - 21540570 tttttcagggATACACGTTCCCGTTCCGTACTCCAGTTGACACTGTTGCTCTTGGTCTCACTGATTATCATGAGATTATCAAAAAGCCAATGGATATGTCGactatgaaaaagaaaattgttggTGAAGAGTATGATAATGCAGGAGAATTCAAGGAAGATTTCAAACTGGTAGGC----------------------AGTATTgtatt----------------------aaaaatatttgtttgaTGG--TTGAGT-----------TGTAGATGATCAACAATTGCCTCTCGTATAATAACGACGGGGATCCAGTGTCTGATATGGCAATCAAATTTCGTAAGGCATTTGCTGCCAAATGGAATAAAGTATTCCCAGatgaaaaagataatttcGCCGGTGAAG---AAGGATC---GGATAACGGTTCAGGAGA------CGAGGCTGACCAGGTAGAGAGCGACGGTGAAGACGCTG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   409539 439 -  1162296 --tttcaggCCTACACATTCCCGTTCCGTAAGCCAGTCGACACTGTTCTTCTTGGACTCGTTGACTACCACGAAGTTATCAAGAAGCCAATGGACATGTCCAccatgaaaaagaaactgattGGTGAGGAGTACGAAAATGCGGAGGATTTCAAGAAGGACTTCAAACTGGTAAGTACAGATCGGTTTG---------AGAATAGCAATcgagaatag-------------aaaaatagtaaaCT-ATGG----AATT-----------TCCAGATGATCCAGAACTGTCTCACGTACAACAACGAGGGTGATCCGGTCTCCGATTTGGCAATTCAATTCCGTGAGGCTTTTGCTGCCAAATGGAAGaaagaatttccagaagacgAAGACACATTTGTAGAAGAGG---GAGAAGCTCAGGATGATAGTACGGTTGAAGCTGCCGACGCTGCCGACGCTGGAGAGGACAGTGACGATGGTG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3418447 451 - 33334924 ---TGCAGGCTTACACGTTCCCATTCCGCCAACCAGTCGATACTGTCGCTCTCGGACTCCACGACTACCACGAAGTTGTCAGAGACCCAATGGACATGGCTACTATGAGACGAAAACTATTTGAAGAGATGTACGACACGGCTTCTGAATTCAACGCTGACTTTAAGcttgtgagtttttctttatttgcATATTATCAGGTTCTTATT--GGCTTAGTTCATGTGGTTGTCATACTTGAAATCT-ACAA--ATGAATGTG--------TTCAGATGATTGACAACTGTCTCGCTTACAACAACGAAGGAGATCCAGTCTCCGCACTCGCCATTAAGTTTCGCAAAGCATGGAATAACAAGTGGAAGAAAGAGTTCCCAGATACTA---CCACTACTACAGATGAGGCTCCAGAAGC---AGA----GGCTCCAGAGAA-----AGCAACATCTGGATCAGACAGTGACAGTGATCATGAGG---
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      116927 423 +   258924 ---ttcagtCATTCACGTTCCCCTTTCGCTATCCGGTTGATGCTGCTGCTCTTGGCTTGTCGGACTACCACGAGGTGGTTAAGAAGCCGATGGATTTGGCGACAATGAAGAAGAAATTGTTTGGAGAAGAATACGAGACGGCTGTAGATTTTAAGGAGGATTTTAAGCTGGTAACA----------------------AACACAAtgat----------------------taaattttaaattt-attt--ctaAACGAAAACTGTATTTCAGATGATTGGCAACTGCCTTCTCTACAATAACAGAAGCGATCCGGTTTCCCAGCTTGCCATTCAGTTTCGAGAGGCTTTTGCGAAAACGTGGAGCAAAGAGTTTAGCGAGGACGATGATGATTTTGGGAAGAACG---AGAAAGA---AGATGGCGGATTATCAGA------CGAATCAGATGAGTCTGAAAGCAATCATGAGAAAGAAAAAG
i caeJap4.Scaffold54    C 0 I 778
e caePb3.Scfld02_254      155953 2050 +   193288 I

a score=7465.000000
s ce10.chrX               595124 181 + 17718866 aagaagaa---gtaaaagaagaCAATGCAGAAGAGAAACCTGCTGAAGAACCT------GAGCAGC---Cagatgagaag------gaagaagaggatcatgaagatg--------------aacgag-------aagaacaggaggaggaagaT------------------------------------TCCAGTGATGAAGAGGATGGTCTTGACGATGATG---ACGTCAGGCGTCACATACCAGCATGTAAGTT
s cb4.chrX              21099471 171 - 21540570 AGAAGGAT---GAGTCTGTGAAGGTCACTGAAACGGCAAATACTGAAAAGCCA------GGAGAGG---CAGTTGCGAAG------ACAGGAGATGACAGCGCCGATC--------------GTCGCC-------GAGATGCAGAGGAAGACGAA------------------------------------TCCAGTGATGAAGAAGATGGATTggatgaagaag---aagcaacA---------GCAACTTgtgagc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   409978 230 -  1162296 AAAGTGAG---GCCGGAGATAAGGAGACTGAAAAGCCA---GCTGAGGAACCA------GTCGAGGCACCAgttgagaag------gaagaagaggcCACTCCGGCTCCAAAACCAGAAGAGGTTGCTCCAAAGAAGGATGAGGACGAAGACGAGGACGAGGATGATCATCACCAGCAAGAAGAAGAGTCTTCCAGTGACGAGGAGGACGGTTTGGATGATGACGACCACGTCAGA---------GCTACTTGTAAG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3418898 175 - 33334924 AGGAAGATAAAGAAAAGGTGAAGGCTGCAAAAACAccagaaagagaagagcCAAAGGCCGCCGAGC---CAGttgaggaggaaaaagaagaagaggacagcg---------------------------------gacaagaggaagaagaggat------------------------------------tcaagtgacgaagaagatgggcttgatgatgatgatgatatcAGA------------CGTTGTAAGTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I

a score=-3429.000000
s ce10.chrX               595305 13 + 17718866 TCAGAAGAAAATC--------------------------------
s cb4.chrX              21099642 45 - 21540570 aaaaatgaaaatgggttttttaaCTGTGGGTGTCATCAGCTAACC
i cb4.chrX              C 0 I 127
s caeRem4.Crem_Contig24   410208  5 -  1162296 -------------------TTTAC---------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e caeSp111.Scaffold629   3419073  0 - 33334924 C

a score=893.000000
s ce10.chrX               595318 17 + 17718866 TATTATAACAAATTATG
s caeRem4.Crem_Contig24   410213 17 -  1162296 TATTATTGTAAATTCTG
i caeRem4.Crem_Contig24 C 0 I 709
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e cb4.chrX              21099687 127 - 21540570 I
e caeSp111.Scaffold629   3419073  0 - 33334924 C

a score=0.000000
s ce10.chrX               595335 63 + 17718866 ACCTGAAGAAACAGTATAGCGCTTAAGAGAATAAGAATAAGCAGAAATTCGTGATAGTGATGA
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e cb4.chrX              21099687 127 - 21540570 I
e caeSp111.Scaffold629   3419073  0 - 33334924 C
e caeRem4.Crem_Contig24   410230 709 -  1162296 I

a score=441.000000
s ce10.chrX               595398 29 + 17718866 TTAAACAGTG-TGCGCAGGTGCCCGATGTA
s cb4.chrX              21099814 30 - 21540570 GTAAACGGTGGTTCGCATATTACCTGTACA
i cb4.chrX              I 127 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e caeSp111.Scaffold629   3419073  0 - 33334924 C
e caeRem4.Crem_Contig24   410230 709 -  1162296 I

a score=-9048.000000
s ce10.chrX               595427  96 + 17718866 GCTGGAAGATTT-----TGG----ACGTCGGAGACATCC--ACCGTCGTACTAGATTTTACAAAAACCTTTTTGAATATAAATCACACACCTCCGCCACTATATACC--------------------------
s cb4.chrX              21099844 126 - 21540570 ----GTCGGTTTGtttatggctgaaaatcagaaattctcatAGCTTTGcagtaatttagaaaaaaaactaatcagTAAGAAATCCCAGTTTTGAG---CTGTTTATCAATagaaagttttcattttattcaCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3419073  18 - 33334924 -------GCTTTTTATATGG---------------------acctt---------------------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e caeRem4.Crem_Contig24   410230 709 -  1162296 I

a score=-11668.000000
s ce10.chrX               595523 273 + 17718866 GCATAGACACTTGCGCTG------AATTGGTTTTTTTT----TAAAGTTAAACATCAACCCATGTAAACCAACATTTCATTTGCAGCAACATCAGCT------------CCAGTC--------------------------GCCAAGCATCCAGAAGCCGC----GATGCCAGAGCCAGCTGCCGAGCATTCCTCAATTCAGTCATCCGAAGCTCAAGC--TCTGGGAGAAATTTCAGGAGCAC--------------------------------------------------------ACCCGATACA----------CATCGGC----GAGTCGGAGATTGCCGGACATGCCGCAGACTCCACTACGGGAG------AGAGTCATGCCTAGGCACAAATT
s cb4.chrX              21099970 389 - 21540570 -----AGATATGTACTTCTAAAATAATCGATTTTAAAACct-tgaaatttattttcaacaaCTA-----CGATATTTGTTTTTCAGCAACATCTGCTGCAACTACTGCTACTActgttgctgaaaaaaaggcttCACCAACTCCAG--CGGCTCAAGTTGC-TACGTCGTCTGAACCTGTCGTGGCAGAGGCTCAAGCTACGTCATCTGAAGCTCAAGCTACCTCATTCGAAGTCCAAGATACTTCATCTGAAGCGCAAGCTGTGAACAACGAAACTGTCAATGCTGAAGACCAGCCAAAACCAGAAACAGTTGAGGTTTCTGCAGCTGCTGCAAGTGAGCCAGCTAGTCATGCTGCGGACTCCACTACTGAAGCTGATTCCACCCATGTCTAGGCATAGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   410939 257 -  1162296 GCATAGAATCTAGCGTTC---------CGATTTTTCGTCCTGTTAGATATCATCacaaaattt-----------tccttttttcagctaCATCTTCC---ACCAATGCTCCAGTCGTTGCT--------------------TCCAAGCCAGCTCAAGACTCATTCGTCGCC-------------------------ACTTCTTCATCTGAAGCTCAGGCCA------------TCCAAGAGACC--------------------------------------------------------ACCGGAACCGATGGAG----CTGTCGCCACTGAAGCTGAGCCAGCCAGCCACGCCGCTGACTCCACTACGGAGG------AAAGCCACGCTTAGGCCCCAATT
i caeRem4.Crem_Contig24 I 709 I 700
s caeSp111.Scaffold629   3419091 198 - 33334924 -------------------------------------------------------caaaatat-----------tttg-aattcagcgaTGTTGGCC--------------------------------------------AAGAAGCAAGCAGAAGCAGCAAAGGCAGCC-------------------GAAGAACATGCTTCATCTGAGGCTCAAGCAGTCGTCGGAGAGGTTCATGAGATG--------------------------------------------------------ACAAG-------------TCCACCAGCAGTTCAAGTGGAGGCTGCTAGTCATCCAGCTGACTCGACAACAGGAG------AAACCCATGCCTAGACACTAATT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I

a score=-19579.000000
s ce10.chrX               595796 419 + 17718866  
s cb4.chrX              21100359 457 - 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3419289 308 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      155953 2050 +   193288 I
e caeJap4.Scaffold54      117350 778 +   258924 I
e caeRem4.Crem_Contig24   411196 700 -  1162296 I

a score=-11810.000000
s ce10.chrX               596215 106 + 17718866 AGTACTA--TATAAAAATTTATCTC---------CAATCTGTATTTTGAATC-AAATGTTCaaaaaaataaattacatcaaaataaatattttttttCAATTCTTGTTAATCAGTCAA---
s cb4.chrX              21100816  69 - 21540570 AATATTATGAATA------TATTTTC--------CCGTTCATC------ATAGAAATCTTCTAAACtg-----------------gatgttttttt-caatcccTCT--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3419597  81 - 33334924 -atattt--atta------tGTTCAAATTAAAAGCTATTAATCTTCCAAATA-AATACTCCAAAAACA-----------------CACAACCCGTT--TCTCTATATTGT-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158003 105 +   193288 AACacta--aataaa---ttatttcatttaA---TTATCTGTCTCTTGAGTACAATTAACCagaattagaaatgaaat-------cacatcttatc-aaatttattttgttagGTTTGatc
i caePb3.Scfld02_254    I 2050 C 0
e caeJap4.Scaffold54      117350 778 +   258924 I
e caeRem4.Crem_Contig24   411196 700 -  1162296 I

a score=1802.000000
s ce10.chrX               596321 22 + 17718866 TTGGTGGCTTCAATGTCATGAA
s cb4.chrX              21100885 16 - 21540570 ------GATCTAGAGTCATGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   411896 22 -  1162296 TTGGTCGATCAAGGGTCATGTG
i caeRem4.Crem_Contig24 I 700 C 0
s caeSp111.Scaffold629   3419678 18 - 33334924 ----AGAATCTAATGACATGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158108 21 +   193288 -ccaaaaatttgatttcgtGAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      117350 778 +   258924 I

a score=92889.000000
s ce10.chrX               596343 131 + 17718866 AAATTGATCAAATGGGAAAAGTTCCTGATTGTGCACATGAATGGCTAATGTAAATTGTTGATCCAACAATGATGACCAGAGATTTTTTGCTTTAGTGTCCAGGTTTTGCTTGACATCGCTGAAAATAATTT
s cb4.chrX              21100901 124 - 21540570 AAACTTGTCGAATGGGAATAATTCTTGGTTGTGGACGTGAATGGCTAATGTGAATTGTTGATCCAAAAGAGAAGACCAGAGGTTTTTGGCTTTAGTGTCCAAATTCTGCTTGATATCGCTGAAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   411918 124 -  1162296 GAATCTATCGAATGGAAACAACTCCTGATTGTGAACATGGATAGCCAACGTAAATTGTTGATCAAGAAGAGACGACCAGAGATTCTTGGCTTTCGCGTCCAGATTCTGTTTGACGTCGCTGGAA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3419696 131 - 33334924 AAATTTGTCGAACGGAAATAATTCCTGATTGTGAACATGGATTGCTAACGTGAATTGCTGATCTAGCAAAGATGACCATAGGTTTTTTGCCTTTGCATCCAGATTTTGTTTGACGTCGctggaaaaattgt
i caeSp111.Scaffold629  C 0 I 66
s caePb3.Scfld02_254      158129 131 +   193288 AGGCGTATCGAATGGAAACAGTTCCTGGTTGTGAACGTGAATAGCCAGTGTGAATTGTTGATTCAATAGCAAATACCATAGATTCTTCGCATTTTGGTCATAATTTTGCTTGACGTCACTGTAAAATGTAC
i caePb3.Scfld02_254    C 0 I 16
s caeJap4.Scaffold54      118128 126 +   258924 AAACCAGTCGAAAGGAAACATTTTCTGATTGTGCACGTGGATTGCTAAAGTGAACTGTTGATCAAGAAGGGAATTCCAGAGAGAATTGGCTTTTGCGTCAAATGATTGCTTAACATCTCTGCAAAT-----
i caeJap4.Scaffold54    I 778 C 0

a score=-17609.000000
s ce10.chrX               596474 75 + 17718866 AGAATATTAATTAAAGGAATGAGCGGATGCGTTTTGCAAATCTACGAAAAAATTTGTAATTTTTAAATTT--ATtcg
s cb4.chrX              21101025 42 - 21540570 -------------------------catcgaattaaaaa------aaaaaaac----actttttggtttttgattcT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   412042 17 -  1162296 -------------------------AATGCAA---------------------------------GTTTT--ATTTG
i caeRem4.Crem_Contig24 C 0 I 5
s caePb3.Scfld02_254      158276 46 +   193288 ----------TTGA-----------CATTTATTTTGATA------GCTAAAACC--AAGGTGAGGATTTC--ATCTG
i caePb3.Scfld02_254    I 16 I 59
s caeJap4.Scaffold54      118254 16 +   258924 -----------------------------------------------------------TATTAAATATG--ATTGG
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3419827 66 - 33334924 I

a score=-7682.000000
s ce10.chrX               596549 20 + 17718866 gaaatttgccggaattg-----aaa
s cb4.chrX              21101072 13 - 21540570 GAG-------GGGATTG-----AAA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24   412064  9 -  1162296 GA-----------ACTC-----AAA
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3419893 13 - 33334924 ----------GAAATTAGTT--AAA
i caeSp111.Scaffold629  I 66 C 0
s caePb3.Scfld02_254      158381 15 +   193288 ----------GTaatttgatcaaaa
i caePb3.Scfld02_254    I 59 C 0
s caeJap4.Scaffold54      118270  9 +   258924 ---------GAAGATTG-----C--
i caeJap4.Scaffold54    C 0 C 0

a score=-4586.000000
s ce10.chrX               596569 12 + 17718866 agttttggcaaa
s caeRem4.Crem_Contig24   412073  5 -  1162296 -----TGATT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3419906 11 - 33334924 TTTAGTGTCAA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158396 12 +   193288 tgttttgataga
i caePb3.Scfld02_254    C 0 I 137
s caeJap4.Scaffold54      118279  1 +   258924 ---------A--
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21101085  0 - 21540570 C

a score=328.000000
s ce10.chrX               596581 7 + 17718866 tcggcaa
s caeJap4.Scaffold54      118280 7 +   258924 TCAGAAA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      158408 137 +   193288 I
e cb4.chrX              21101085 0 - 21540570 C
e caeSp111.Scaffold629   3419917 0 - 33334924 C
e caeRem4.Crem_Contig24   412078 0 -  1162296 C

a score=-5588.000000
s ce10.chrX               596588 69 + 17718866 atcggcaaaccagcatgttgctgatttgccaaattcgtcgacaaaaaaatttgccgtccactcctgG--------------------------TT----
s caeRem4.Crem_Contig24   412078 33 -  1162296 ----------------------GATTTTCGAGGTTAATG--------------CTGTACTTTCGTGG--------------------------TT----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3419917 79 - 33334924 -CCAGCAAAATA----------TATAGCTGAGATTAGTT---------ATAACCTCTTTTTCCGTAAAATTAGCAATTTATGCacaaattttcttaaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      158408 137 +   193288 I
e caeJap4.Scaffold54      118287  0 +   258924 C
e cb4.chrX              21101085  0 - 21540570 C

a score=-7333.000000
s ce10.chrX               596657 42 + 17718866 -ATGATATCAATAAAATTTCAAAACCTTTAAA-----TCTTTGACGAG------------------
s caeRem4.Crem_Contig24   412111 47 -  1162296 AATGCTGTCAATGTATTCTATTATAATGGAAA-CAGTTCTTTAGTGGG------------------
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold629   3419996 46 - 33334924 ---------aatgtactggaaaaatgtaaaaaccTCTGAATTAACAAAACGACC-----------A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158545 65 +   193288 -ACgatccaaattcaattctcgATCATTCAAATCTAATTCTCAGTAAAGATACTCCGCGTCAAGGA
i caePb3.Scfld02_254    I 137 C 0
e caeJap4.Scaffold54      118287  0 +   258924 C
e cb4.chrX              21101085  0 - 21540570 C

a score=112490.000000
s ce10.chrX               596699 195 + 17718866 CTTACATAATTTTGGTTGCAGTTTTACGTTTCATTTTTTCAAATGTAAAGTAAGGCTTGGATTTTTGAAAAGCAATGAGTGAGTATCTGGGATGAACTGTGTTGATTAATGCATTCTCCTTCACGTAACTGTATGTTTCAGTTTTTGGATTAAATGTTGCATTTTTCT--GAAAA------------------------C----------------------TATACTTTTTCTTCGATTGTT
s cb4.chrX              21101085 202 - 21540570 CTAACATGATTCCTGTTGCTGTTTTCCTTTTCATAGTTTCGAATGTAAAATATGGTTTTGACTTTTGATAAGCAATTACAGAGTATCTTGGGTGAACAGTATGTATGAATGCGTTCTCCTTGGCATATGTGATAGTTTCTGTTTTTGGATTGAAAGTGCcgtttttct--aaaag------------------------tttgaataGCAATAAAA---------------TTTGTGTTTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412160 241 -  1162296 CTTACATCAATCCAGTGGcagtttttctcttcatcgtTTCAAATGTGAAATATGGTTTAGATTTCTGGTATGCAATAAGCGAATATCTTGGATGAACTGTATGAATTAGTGCATTCTCTTTTGCATATGTATAGGTTTCCGTTTTTGGGTTGAATGTTgcgtttttct--ggaaaagtatAAACTATTGGATCtatgtttttggaaaacattaGGAAAAACacttccttatttttcttttctc
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold629   3420042 200 - 33334924 CTTACATTAACTTAGTGGCTGTCTTCCgtttcattgtttcaaaCGTGAAGTACGGCTTAGCTTTCTGATACGCGATCAACGAATATCTTGGATGAATAGTGTTAATCAACGCATTTTCCTTTGCATAAATGTATGTATCCGTTTTTGGATTGAATGTCGCattcttct--aaaaa------------------------t-----------------ttcgCATTTTTGACTGAACTATTCCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158610 214 +   193288 CTCACATAAGCTTTGTTGCAGTTTTCCGTTTCATCGTTTCAAATGTGAAGTATGGCTTTGCTTTTTGATACGCGATTAGTGAATATCTTGGATGAACAGTCTGGATGAACGCGTTTTCTTTCGAGGTCAAATACGTGTCGGTTTTTGGATTGTATGTcgcatttttcttcaaaaa------------------------c-----aaacatgaGGGGTTAATCATGATGACTATACCATTGTT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      118287 197 +   258924 CTAACATGATTTTTGTCGCAGTTTTCCTTCTCATGGTTTCGAAGATGAATGAgggttttgatttttgataagCGATGAGGGAGTACCTTGGATGAATAGTGTGAATTAAAGCATTTTCTTTTAAGTAAATGTAAGTTTCTGTTTTTGGGTTGTAtgtcgaatttttctgcaaaaa------------------------g----------------------tTTAGTTTGTCAAAGATCGCT
i caeJap4.Scaffold54    C 0 I 1453

a score=-3611.000000
s ce10.chrX               596894 9 + 17718866 CGAACAGCT
s cb4.chrX              21101287 5 - 21540570 AAACT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412401 5 -  1162296 atacA----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420242 5 - 33334924 TACAT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158824 5 +   193288 TGAAT----
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      118484 1453 +   258924 I

a score=147792.000000
s ce10.chrX               596903 303 + 17718866  
s cb4.chrX              21101292 290 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412406 297 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420247 288 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      158829 500 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      119937 292 +   258924  
i caeJap4.Scaffold54    I 1453 I 90

a score=6461.000000
s ce10.chrX               597206 15 + 17718866 TAGATTCAGTGGGTT
s cb4.chrX              21101582 15 - 21540570 GAGAAGCATTGGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412703 15 -  1162296 AAGGTGTAATGGGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420535 15 - 33334924 CAATTGCAGTGGATT
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_254      159329 15 +   193288 cagttgcaatGGGTT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I

a score=197.000000
s ce10.chrX               597221  8 + 17718866 -ACCTGCAA-
s cb4.chrX              21101597  8 - 21540570 -TCCTGAAA-
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   412718  8 -  1162296 -TGCTGAAA-
i caeRem4.Crem_Contig24 C 0 I 40
s caePb3.Scfld02_254      159344 10 +   193288 ACCTTAAAAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I

a score=-1285.000000
s ce10.chrX               597229 20 + 17718866 CTTTA--TAGCTGTTGAGAATT-
s cb4.chrX              21101610 23 - 21540570 CATTAACACCAGGGCTGGgcgta
i cb4.chrX              I 5 C 0
s caePb3.Scfld02_254      159354 22 +   193288 CTTTAAGAAGTTGTTTAGAATT-
i caePb3.Scfld02_254    C 0 I 36
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=162.000000
s ce10.chrX               597249 31 + 17718866 GCAGCATTTTCAAACAATTGTTTTCTTTTAA
s cb4.chrX              21101633 25 - 21540570 aaatattttttaaaggatt------cTTTAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      159376 36 +   193288 I
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=-4482.000000
s ce10.chrX               597280 109 + 17718866 CTGA-AAGTCAAATTTGCTTTGACGATGTAACTTAAATGTTttaaagg--cgtcgt---------agtggaatttttttatat-------tgcttca------------------ttagactcgaaatt-----------------gtctgaaaacactgaac
s cb4.chrX              21101658 149 - 21540570 CGGAAACGTAAAATTTA----------CGGGattaaaatttgtaaaattccgtGAAATCCGTAAAAATCGGAACATTTGCAAT----GGATGTTTTTAGCGATAAAAACCTCTTTTTAAGCCCGAGTTTAGCgctatttcaagttttttcgcAAACTttcaat
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254      159412 134 +   193288 caga-----aaaatata----------GTGTCTTAGATTTTCTATACT--CgttgttttcaataatagGGAAGCTTATTctattttgagaaacttcGAGTGGCTGAAA-------TTAAAACTGAAATCGGATGGCTTCCA-----CTCagaaaacactcaaa
i caePb3.Scfld02_254    I 36 I 216
e caeJap4.Scaffold54      120229  90 +   258924 I
e caeSp111.Scaffold629   3420550   7 - 33334924 I
e caeRem4.Crem_Contig24   412726  40 -  1162296 I

a score=-480.000000
s ce10.chrX               597389 144 + 17718866 ttcatgat---gaaacttcttgaaaacttctca----------aacaaaagttatggcggctc--aaaaaatta-gctaaaattagctaaaatatgaaatttaactaac-----------ttgtcaacgtcgcagcggctggaaactaatttttttgaatttaccgtctaa
s cb4.chrX              21101807 164 - 21540570 tcaataattcagaaGTT-----ATAAGTTTTCATACTTGTATcaccaaaaaatctcaaaactcccaaaaaatgacgttaaaaaTGATTTGAGTCT-AAATGTTACTAatagggacgaggatttttaGC-CCACGGCTATTAGGTCATTATGCTTTTCAAGTTAGcttttgc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      159546 216 +   193288 I
e caeJap4.Scaffold54      120229  90 +   258924 I
e caeSp111.Scaffold629   3420550   7 - 33334924 I
e caeRem4.Crem_Contig24   412726  40 -  1162296 I

a score=-1485.000000
s ce10.chrX               597533 60 + 17718866 ------ttttgTTTCCAGAATTAATATCAGGTAGAATAAAGTTTAGCTTACAAATTAAAACACAAA--------------------
s cb4.chrX              21101971 59 - 21540570 cgattttttcggtatttatccgaaatttcgacaaaaaaaaattttgtttgc---------cagaaaca------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254      159762 66 +   193288 ------ttctatttttcaaaccaatttttgaaataacaaaGCTTcg--------------caaaaacttcgaaaatagtgcaaaaa
i caePb3.Scfld02_254    I 216 I 127
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=379.000000
s ce10.chrX               597593 42 + 17718866 TTACCTTCAGTTTTAAAGTCAAATTTAATTTACTCACTAACA
s cb4.chrX              21102030 34 - 21540570 -----gtcaatttttg---caagttttaCGGTTTCACTGATA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      159828 127 +   193288 I
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=-1859.000000
s ce10.chrX               597635 22 + 17718866 ATAAGAACATGTAAAT--TCATAA---
s cb4.chrX              21102064 21 - 21540570 -TAATTTTACGGAGGT--CCGTAA---
i cb4.chrX              C 0 I 16
s caePb3.Scfld02_254      159955 22 +   193288 -----attacagcaTTTACGGTAATTA
i caePb3.Scfld02_254    I 127 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=301.000000
s ce10.chrX               597657 15 + 17718866 TTTCATCAATACAAA
s caePb3.Scfld02_254      159977 15 +   193288 GATTTTCGagacaaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I
e cb4.chrX              21102085 16 - 21540570 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=-3255.000000
s ce10.chrX               597672 82 + 17718866 -------CAAAATTTTTTTAAA---AAAGAATCT------------AAAACCTTTTTCCTTCAACTCGACCAAAAAAATTTAGCT---AAAAATTTTTATTGGCATG
s cb4.chrX              21102101 84 - 21540570 -------TAAAATGCCTTGAAATCCATAAAATCC---------GTAAAAACCGTAAACGTACAATCCCAGC--CCTGATTGACat---cgaaattttaattgaTA--
i cb4.chrX              I 16 C 0
s caePb3.Scfld02_254      159992 98 +   193288 aactttgaaaaatcgctCAAAATACATAGCATTTTCTTTCTGGATAGAA---GGAGACGTTTTATTATATCAGCTGAATTGAGATTCATAAACTTCTAAAC------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I
e caeRem4.Crem_Contig24   412726 40 -  1162296 I

a score=1929.000000
s ce10.chrX               597754 15 + 17718866 TTGAACTCACCAGCA
s cb4.chrX              21102185 12 - 21540570 ---AACTTACCATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412766 15 -  1162296 TTCGAATTaccttcc
i caeRem4.Crem_Contig24 I 40 C 0
s caePb3.Scfld02_254      160090 15 +   193288 TGAAACTCACTTTCT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I
e caeSp111.Scaffold629   3420550  7 - 33334924 I

a score=4607.000000
s ce10.chrX               597769 22 + 17718866 ATATTTTTTGTTGAAATTGCAT
s cb4.chrX              21102197 22 - 21540570 ACACTTTTCAAAGAAACCTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412781 22 -  1162296 aaatttttcattgataCCGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420557 22 - 33334924 acatttctcattgaaactgaat
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_254      160105 22 +   193288 ACGCGACTTTCTTCAACGGAAT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120229 90 +   258924 I

a score=205226.000000
s ce10.chrX               597791 312 + 17718866 GTTTTCTCAACTCGTCTTCAAGTTTTTCGTTTACAAATTGCCCAAATCTAATTGTAAATATCTCAGTAATTTTCTGTACATCTCTTGTTATCAGACTACGCCCGGAAGTTGCCCAATGTCTG-TAAAAAAG------ATATACTCCTTCTATCAAA--------ATC-----ATTGTTCAGCTCACGTGTTTTGTCGCTTTAGTATCACTTGTTTCAACCTGAATCTAGTTCTAGTGAAAGCCATTCCAAAGACGAGATATTGGTCCAGGACTCGGGCACATGAAAATTTCATGATATTCATCCACCCATACATTCCTTTGTCGTACTGAAA
s cb4.chrX              21102219 310 - 21540570 GTTTACGAAACTCGTCTTCTATTTTCTCATTAACAAAAAGTGCGAATCTGATTGTGAATActtctgttattttttgaacgtCTCTTGTTATCAGACTACGCCCAGATGTTGCCCAGTGTCTG-AACAAAACGAATTATTA-AGTCTGAGAAAGAAC--------AGC-----G-------GCTCACGTATTCTGTCTTTTTAATATCACTTGTTTCAGACGGAATCTAGTTCTTGTGAACGCCATCGCAAAAACCAAGAATTGATCATCGACGAAAGCACATGAAAATTTCATGATGTTCATCCATCCGTACATTCCTTTGTCATACTAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   412803 316 -  1162296 GTTTATGAAACTcgtcttccaatttttcattgacaAAGTGAGCAAACCTTATCGTGAATATctcagtaattttttgaacatctcTTGTTATCAGACTCCTTCCGGATGTAGCCCAATGTCT-----AAAAGCATTTAGTACAGTTATTGAATGAACCGGATATTAGT-----G------AACGTACGTGTTTTGTCTCTTGAGTATCACTTGTTTCAGACGAAACCGAGTTCTGGTGAATGCCATCGCGAAAACCAGAAACTGATCATTGACAAACGCgcatgaaaatttcatgataTTCATCCATCCGTACATTCCTTTGTCGTACTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420579 313 - 33334924 gttttttgaactcatcctcaagtttttcattcacaaaCAAAGCGAATCTGATAGTAAACACTTCGGTTATTTTTTGTACGTCTCTGGTGATAAGACTTCTTCCAGATGTTGCCCAGTGTCTGTAAACAAAGAAACAACTAAACTcagtttgaaaat--------atg-----a------aaattacGTGTCTTGCCGTTTTAGAATGACTTGTTTTAAACGAAAACGGGTTCTCGTGAAAGCCATCGCAAAAACTAGGTATTGATCATTTATGAATGCAcatgaaaatttcataatattcATCCAGCCGTACATCCCTTTATCATACTGTAA
i caeSp111.Scaffold629  C 0 I 35
s caePb3.Scfld02_254      160127 308 +   193288 GCTTTCGAAACTCTTCTTCAAGTTTATGAATCACAAAAAGTGCAAACCTGATTGTGAAAACCTCTGTAATTTTCTGAACATCTCTTGTTATAAGACTCCTTCCTGATGTTGCCCAATGCCTG-AAGCAAAG---TAAATACATTTGATTCAAACAT--------CT------A------TTCTCACTCATTTTGTCTTTTCAGTATCACTTGTTTCAGGCGAAACCGTGTTCGTGTAAAAGCCATTCCGAATATTAAGAACTGTTCATCAATGAAGGCGCATGAGAACTTCATGATGTTCATCCATCCATACATTCCTTTGTCAtactaaaa
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      120319 307 +   258924 GTTTTTTGAGCTCATCACTAAGTTTTTCCTTCACatattcggaaaatcgaatagTAAAcacttctgtaattttttgaacatcACGAGTTGTTAAGCTTCTTCCAGACATTGCCCAATGgcta-aaaataat----------gttttaaaCAAGAAT--------TTGTTCAAA------ATCTTACGTGTCCTGTCTCTTTAATATCACTTGTTTGAGCCGGAATCGGGTTCTAGCGAATGCCATaccaaaaacgagaaattcATCGTTGATAAATGCACAGGAGAATTTCATGATATTCATCCAACCATACATTCCTTTGTCGTactaaaa
i caeJap4.Scaffold54    I 90 I 31

a score=-1974.000000
s ce10.chrX               598103 4 + 17718866 CAAT---
s cb4.chrX              21102529 4 - 21540570 ---TATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   413119 4 -  1162296 ---TCAC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      160435 4 +   193288 aaat---
i caePb3.Scfld02_254    C 0 I 336
e caeJap4.Scaffold54      120626 31 +   258924 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I

a score=-858.000000
s ce10.chrX               598107 32 + 17718866 GACAATTGTGGAGGTGGACCGAGATGATGTCA----------------
s cb4.chrX              21102533 43 - 21540570 CGAAATCTAGAAGGTGGA-----ATGACGTCAAAAATAGAGGGTGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   413123 21 -  1162296 GGAA------AAACTAGA-----GTGATGTCA----------------
i caeRem4.Crem_Contig24 C 0 I 130
e caePb3.Scfld02_254      160439 336 +   193288 I
e caeJap4.Scaffold54      120626 31 +   258924 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I

a score=-3690.000000
s ce10.chrX               598139 555 + 17718866  
s cb4.chrX              21102576 681 - 21540570  
i cb4.chrX              C 0 I 92
e caePb3.Scfld02_254      160439 336 +   193288 I
e caeJap4.Scaffold54      120626  31 +   258924 I
e caeSp111.Scaffold629   3420892  35 - 33334924 I
e caeRem4.Crem_Contig24   413144 130 -  1162296 I

a score=0.000000
s ce10.chrX               598694 67 + 17718866 CGCATTTGAAAAAAATCACTTTAAAATTTTTTCTGCATGTTGTTTTTTTTTAAGTATTTGCAATTTA
e caePb3.Scfld02_254      160439 336 +   193288 I
e caeJap4.Scaffold54      120626 31 +   258924 I
e cb4.chrX              21103257 92 - 21540570 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I
e caeRem4.Crem_Contig24   413144 130 -  1162296 I

a score=993.000000
s ce10.chrX               598761 18 + 17718866 CTTTTTCTTTCAATTTTA
s caePb3.Scfld02_254      160775 18 +   193288 CCtttactttcagttttt
i caePb3.Scfld02_254    I 336 C 0
e caeJap4.Scaffold54      120626 31 +   258924 I
e cb4.chrX              21103257 92 - 21540570 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I
e caeRem4.Crem_Contig24   413144 130 -  1162296 I

a score=331.000000
s ce10.chrX               598779 10 + 17718866 CTCCTTCTCC
s caeRem4.Crem_Contig24   413274 10 -  1162296 CTTGTTATTC
i caeRem4.Crem_Contig24 I 130 C 0
s caePb3.Scfld02_254      160793  4 +   193288 ------cttc
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120626 31 +   258924 I
e cb4.chrX              21103257 92 - 21540570 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I

a score=1092.000000
s ce10.chrX               598789 2 + 17718866 AA
s caeRem4.Crem_Contig24   413284 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      160797 2 +   193288 aa
i caePb3.Scfld02_254    C 0 I 11
s caeJap4.Scaffold54      120657 2 +   258924 aa
i caeJap4.Scaffold54    I 31 C 0
e cb4.chrX              21103257 92 - 21540570 I
e caeSp111.Scaffold629   3420892 35 - 33334924 I

a score=-2228.000000
s ce10.chrX               598791 5 + 17718866 -AACA----T
s cb4.chrX              21103349 5 - 21540570 -aGTG----T
i cb4.chrX              I 92 C 0
s caeRem4.Crem_Contig24   413286 9 -  1162296 -AATGCACTC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      160810 5 +   193288 -aaca----t
i caePb3.Scfld02_254    I 11 I 12
s caeJap4.Scaffold54      120659 5 +   258924 aaaaa-----
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3420892 35 - 33334924 I

a score=145796.000000
s ce10.chrX               598796 163 + 17718866 ACCTTAAAATCATGTTCACTAAACGAGCCAAACTTCAATAGTGCACAATTTGCAAATTCCTCACGGATTTCATTGATAGGCATCCAGGGTTTGTTTTTTAATGTTCCTAACTGATCTTCCATTCGTATTTTCGTATAATTTTCAAGTTGAGATTTATGAAGAC
s cb4.chrX              21103354 163 - 21540570 ACCTTAAAATCATGTTCGCTGAATGAGCCAAACTTCAATAATGCACAATTTGCAAATTCCTCTCGAATTTCGTTTACTGGCATCCAAGgtttatttttcagcgatCCTAATTGATCCTccattctgatttttgtgtaATTCTCTAATTGACTTTTATGAAGGC
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   413295 163 -  1162296 ACTTTGAAATCATGCATACTCAATGAGCCAAATTTCAGCAGTGCACAATTTGCAAACTCCTCTCGAATCTCGTTTATTGGCATCCAcggtttatttttcagtgttcctAATTGATCCTCCATTCGAATTTTAGTGTAGTTCACTAATTGGCTCTTGTGAAGTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3420927 163 - 33334924 ACCTTGAAATCATGCTCACTAAAAGAACCGAATTTTAGAATGGCACAATTAGCGAACTCCTCTCGAATCTCATTCACTGGCATCCaaggtttgttttttaatgagCCTAATTGGTCTTCCATTCGAATCTTTGTATAATTCACGAGTTGGCTTTTGTGCAGTC
i caeSp111.Scaffold629  I 35 C 0
s caePb3.Scfld02_254      160827 163 +   193288 CCCTTAAAATCATGTTCGCTGAAGGATCCAAACTTCAATGTAGCACAATTGGCGAATTCTTCTCTTATTTCGTTCACTGGCATCcaaggtttgtttttcaatgagcCTAGTTGATCTtccattctgatttttgtataattttctAATTGGTTTCTGTGGAGAC
i caePb3.Scfld02_254    I 12 C 0
s caeJap4.Scaffold54      120664 163 +   258924 accttgaaatCATGTTCACTGAATGTTCCATACTTTAGTAACGCACAATTAGCGAATTCCTCTCTGATTTCACTGACTGGCATCCATGGCTTCTTTTTCAAACTTCCAAGTTGATCTTCCATTCGAATCTTTGTATAGTTCTCTAGCTGACTTTTGTGTAATC
i caeJap4.Scaffold54    C 0 C 0

a score=812.000000
s ce10.chrX               598959 3 + 17718866 TGA
s caeRem4.Crem_Contig24   413458 3 -  1162296 TGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421090 3 - 33334924 TAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      160990 3 +   193288 TGt
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      120827 3 +   258924 TAA
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21103517 4 - 21540570 I

a score=-381.000000
s ce10.chrX               598962 3 + 17718866 AAG-
s caeRem4.Crem_Contig24   413461 3 -  1162296 AAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      160993 3 +   193288 aaa-
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      120830 3 +   258924 -AAT
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21103517 4 - 21540570 I
e caeSp111.Scaffold629   3421093 0 - 33334924 C

a score=-137.000000
s ce10.chrX               598965 1 + 17718866 T
s caeRem4.Crem_Contig24   413464 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      160996 1 +   193288 t
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120833 0 +   258924 C
e cb4.chrX              21103517 4 - 21540570 I
e caeSp111.Scaffold629   3421093 0 - 33334924 C

a score=-2285.000000
s ce10.chrX               598966 112 + 17718866 TGAATCTCATTACTAGTCTTACACTCTACACTGAAAATAGTTAAACTATACGGCTTTGTTTGCACAGATTTCAAAAACTTTACGTAATTAAGTCTTTGCTTAAATGTTGCGT
s caeRem4.Crem_Contig24   413465  21 -  1162296 TGTAT---------------------------------------------------------------------GAACTT----------------------GATATTGTGT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      160997   0 +   193288 C
e caeJap4.Scaffold54      120833   0 +   258924 C
e cb4.chrX              21103517   4 - 21540570 I
e caeSp111.Scaffold629   3421093   0 - 33334924 C

a score=0.000000
s ce10.chrX               599078 1 + 17718866 G
e caePb3.Scfld02_254      160997 0 +   193288 C
e caeJap4.Scaffold54      120833 0 +   258924 C
e cb4.chrX              21103517 4 - 21540570 I
e caeSp111.Scaffold629   3421093 0 - 33334924 C
e caeRem4.Crem_Contig24   413486 0 -  1162296 C

a score=-369.000000
s ce10.chrX               599079 16 + 17718866 GGCTTGTTAGTTTCAG
s caeSp111.Scaffold629   3421093  4 - 33334924 GGCT------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      160997  0 +   193288 C
e caeJap4.Scaffold54      120833  0 +   258924 C
e cb4.chrX              21103517  4 - 21540570 I
e caeRem4.Crem_Contig24   413486  0 -  1162296 C

a score=0.000000
s ce10.chrX               599095 4 + 17718866 TGTG
e caePb3.Scfld02_254      160997 0 +   193288 C
e caeJap4.Scaffold54      120833 0 +   258924 C
e cb4.chrX              21103517 4 - 21540570 I
e caeSp111.Scaffold629   3421097 0 - 33334924 C
e caeRem4.Crem_Contig24   413486 0 -  1162296 C

a score=546.000000
s ce10.chrX               599099 2 + 17718866 AA
s cb4.chrX              21103521 2 - 21540570 AA
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_254      160997 2 +   193288 aa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      120833 0 +   258924 C
e caeSp111.Scaffold629   3421097 0 - 33334924 C
e caeRem4.Crem_Contig24   413486 0 -  1162296 C

a score=-2193.000000
s ce10.chrX               599101 15 + 17718866 AAATTTTTTGGACAT
s cb4.chrX              21103523  5 - 21540570 AAATC----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3421097  3 - 33334924 ------------cac
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      160999 15 +   193288 gaaatttttggCCAT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      120833 12 +   258924 AAATTCTTTAGA---
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   413486  0 -  1162296 C

a score=-8009.000000
s ce10.chrX               599116 64 + 17718866 ATTTTTTTGGACCTGCAAAGGACAGTCAAAAATTTTCTCCTCAACAATGTTTGCCAAAACCGCA
s cb4.chrX              21103528  7 - 21540570 ------------------------------------------------AACCGCC---------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629   3421100  9 - 33334924 ---------------------------------------------attttttgc----------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      120845  8 +   258924 --------------------------------------------------TTGCTATG------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161014  0 +   193288 C
e caeRem4.Crem_Contig24   413486  0 -  1162296 C

a score=-9162.000000
s ce10.chrX               599180 55 + 17718866 CGATTTTGACCTTCTTTTTAAAAAATGTGAGTATTCTTCAAATTTCTAAATAAAA
s cb4.chrX              21103536  9 - 21540570 ------------------------------TAGTTCTTC----------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   413486  9 -  1162296 ------------------------------CAATTTTGA----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421109 17 - 33334924 ---------------------------------tttttcatattcataaA-----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      120853 22 +   258924 ------------------------------CTATTCCTACCATTTATTTATT---
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161014  0 +   193288 C

a score=105397.000000
s ce10.chrX               599235 326 + 17718866 CTGTTGAATATTTTATCAGAACTTACATTCCAACCTTGAAAAAAGTGTCATTACTAGTATCCTGAAAAGGAACATATCGTTCAGCAGAGTGATCGGCTCGTCTTAGAAAAGAAGTATAGTTGAACTCGGATTTCAGAAAACTTGCTGTAAA---AAACTCAACTTATCTAATATTTACTTTG-------CAAAACGTTTTCGTTACTGTAA----CTTACCGTACATAGCATCTTTGTACACTTTGTCGAAATTTATTTTTTTGGAACATGAAATTTGAAATAAGAAAACTAGG------------------ATTAACCGGCAAAATATCATAATACAGAGGGATTAG------GAACGGATTT-
s cb4.chrX              21103545 320 - 21540570 ---------ATTATTTCGAAACTCACAttcctattttgaaaaaagtgtcgTTGCTGGTATCTTGAAACGGAACGTATCGCTCAGCAGTATGATCCGccctttttaaaaatgaactATAGTTGAACTCGGCTTTCAGAAAACTTGCTAAAAAATGA--------TTA------TGTTACTTTT-------TCTGAACTATTTCATT----------CTTACCATACATTACACTTTTGTAAGCTTTGTCGAAGTTAATCTTTTTAGAATATACAGTttgaataaagaaaaaagtgcCAAGACTTAAGCACCAAAACAACAAGCGGTGTATCATGGTGC----GAATAAGAAATTCAAACGGATTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   413495 332 -  1162296 ---------TCTTtctaaaaactcacattcccactttgaaaaatgtatcattGCTAGTGTCTTGAAAAGGTACATATTTCTCTGCAGTATGGTCAGCCcttctcaaaaatgatgtgtaattgaattcagatttcaaaaagcttgctgaaaaacaaaatt----tca------aactgaaacc-------tataatttaatttatt-tgtcATCTCCTCACCATACATTCCATCTTTGTACACTTTCTCAAAGTTTATCTTCTTCGAACAGATAATTTGAAATAGGAATGAGAAGTTAAGAATCGAACTAAACAACAACAATCGAAATATCATGGTGT----GGATTAGATATCCAAACGGA-TT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421126 285 - 33334924 ---------------------CTTACATTCCAACTTTGAAGTAAGTGTCATTACTAGTGTCTTGAAATGGTACATATTTCTCTGCTGTATGATCTGCtctcatcaaaaaagatgtGTAATTGAACTCTGATTTAAGAAAACTAGCTGTAAATCGAAAct--agtt---------ttagtttt-------caaacgT----TATCA----------CTAACCGTACATGGCATCCTTGTAAActttatcaaaatttatttttttcg---------------tccGGGCAACCACATTAAATATGAATCCGAGAAAGAGCAATCGAAATATCATG----------ATTTGTTATCGAAGCGGA-TT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      161014 292 +   193288 -------CTGTTGAATTAAAACTCACATTCCGACCTTGAAATAAGTATCATTGCTTGTGTCTAAAAATGGCACATATTTTTCTGCAGAATGATCAgctctattcaaaaatgatgtatAATTGAATTCGGCTTTCAAGAAACTTCCTG-AAGT--AAACT----TT---------TTGcatca-------taaaaattgagtaaCA----------CTGACCGTACATTGGATGTTTGTAAACCTTATCAAAATTTatcttttt---------------------ggaaatggagCAATGCATGAGAACAGTGAGTAGCAAACTAAAAATCAGC----------ATTTGATAATGAAACGGA-TT-
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      120875 301 +   258924 --------------------ACTTACACACcaactttgaaaaaagtatCATTACTTGTATCTTGAAATGGAACATACTTCTCCGCTGTATAGTCagcttttttgagaaataaagAATAGTCGAACTCAGAATTCaaaaaactagctgaaaaaattaatttaattta------atttaattttgtttatatacaaaataatcaaaa-t--------CTTACAGTATTTTACGTCTTTATAGACATTAtcaaaattaactttttttgaacaCG---------ATAAGAAAAATAACTGCAAC------------AATATCAAGACAAATTTCATATTAC----GAA---GGTGGCTAAAcgga-ttt
i caeJap4.Scaffold54    C 0 I 11

a score=-339.000000
s ce10.chrX               599561 12 + 17718866 CTC-----CGATGACGG
s cb4.chrX              21103865 12 - 21540570 TGC-----CGATAACGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   413827 12 -  1162296 TGC-----CGATGCCGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421411 17 - 33334924 TGCTTTCGATAAAACGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      161306 17 +   193288 TGAATGTTCAAACTCGG
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      121176 11 +   258924 I

a score=9566.000000
s ce10.chrX               599573  98 + 17718866 TGTGGTTTTATA-CGA-------ATGCCACTGGACAAACACCTT-------GCCCCGCTCGCACTTTGTTTGAATCT--GGTTCCTGA---AGCTTGAAATTGCTG--------TTTTGACACTCT
s cb4.chrX              21103877  96 - 21540570 TTCAGTTTTATAGAAA-------GGCGTCTTGGACAAACAACTCCGGA---GGTGCGG-CACTTTTTCATTAGTCTT----TTTCCTAA--AGCTTT-----GTTG--------TTTTGACACTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   413839  99 -  1162296 TTCAGTTTTATATCAA---------TCTATTAGGCAAACAACTACGGCACTGGCCCgc-caatttttgtttgattct--TGTTTTCATA--AGCCTG-----GTTG--------TTTTGACACTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421428  93 - 33334924 TTCAGTTTTATATCCA-------GTGGCAGTGGCCAAACAT----------TGCGCGc--actttttgtttgatttt--tgttccTGGAGCAGCCTG-----GTTGT-------TTTTGACACTCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      161323  91 +   193288 CTCA-TTTTATATC---------ACGATTTTAGACAAACAT----------TGCGCGC-----TTTTGTTTGGTTCC--TGTTTCTGG---GTGCTG-----ATTGTGTATATGTTTTGACACTCT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      121187 105 +   258924 tgcgAATTTATATGAGCTCTATTTGAATATTAAACAAACAACTT-------GGCATTT---CGCTATGTTTGATTTTCTTGTTCCAGCAC-cttttg-----gttgttt-----ttcttGGACTTT
i caeJap4.Scaffold54    I 11 I 1712

a score=4772.000000
s ce10.chrX               599671 7 + 17718866 TTGCTCA
s cb4.chrX              21103973 7 - 21540570 TTGCGCA
i cb4.chrX              C 0 I 990
s caeRem4.Crem_Contig24   413938 7 -  1162296 TTGCTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421521 7 - 33334924 TTGCTTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      161414 7 +   193288 TTGTTCA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      121292 1712 +   258924 I

a score=-1284.000000
s ce10.chrX               599678 2 + 17718866 GT-
s caeRem4.Crem_Contig24   413945 2 -  1162296 -CT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3421528 2 - 33334924 AC-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      161421 2 +   193288 AT-
i caePb3.Scfld02_254    C 0 I 414
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I

a score=541.000000
s ce10.chrX               599680 5 + 17718866 CTTAG
s caeRem4.Crem_Contig24   413947 5 -  1162296 GTTAG
i caeRem4.Crem_Contig24 C 0 I 1261
s caeSp111.Scaffold629   3421530 5 - 33334924 CATAG
i caeSp111.Scaffold629  C 0 I 9658
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I

a score=0.000000
s ce10.chrX               599685 1750 + 17718866  
e caePb3.Scfld02_254      161423  414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980  990 - 21540570 I
e caeSp111.Scaffold629   3421535 9658 - 33334924 I
e caeRem4.Crem_Contig24   413952 1261 -  1162296 I

a score=811.000000
s ce10.chrX               601435 85 + 17718866 CCATTTATTTCATCAATTTCATCGCTC-CCGTCTCCTCCTACCCTCCCCAACCCCCGTCT-TCAACTAAG---GAGAGGCAGCAGCTCGG
s caeRem4.Crem_Contig24   415213 75 -  1162296 CCATTCATTTCAGTCCTTTCATCATTCACCGCATT---------------GCCTCCGTCCGTCAAGTAGGCCAAAGGAGAGGCCCCTCTG
i caeRem4.Crem_Contig24 I 1261 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I
e caeSp111.Scaffold629   3421535 9658 - 33334924 I

a score=1791.000000
s ce10.chrX               601520 72 + 17718866 AATAAAAGTGTG--------------------CGTGCAAAACAAGGAGATTGGTGTGGACGGGGGGGGGGAGGAATGCCAGAATCGGCGGTC
s caeRem4.Crem_Contig24   415288 90 -  1162296 AATAATAgagtgtgtctgtgtgtctgtgtgtctgtgcaaaacaaggagg--agagggagtgtctatgtgtgtgtgtgccaGAATCGTCAGTC
i caeRem4.Crem_Contig24 C 0 I 19
s caeSp111.Scaffold629   3431193 50 - 33334924 AATAGGAGGGTA--------------------TGTGCAAAACAGGGAGT-CAGGAggagtgtgtgtgtgta---------------------
i caeSp111.Scaffold629  I 9658 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I

a score=-267.000000
s ce10.chrX               601592 19 + 17718866 CGTCCTTCCCTCTACTTCG
s caeSp111.Scaffold629   3431243 14 - 33334924 cGTCC---CCTCTGA--AA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I
e caeRem4.Crem_Contig24   415378 19 -  1162296 I

a score=16417.000000
s ce10.chrX               601611 187 + 17718866 GTGGAGTCGTGTGGTCTCTCGCAGTCTTGTGCTTGGCCTTT-----------TACTCTCGTCGTCT-----GTCTTCACTTGCCTCCCTCCCGTTT-TCCAAAACAACCCCCTCCTTTTTCCAGATacacagacacacacacacac-acacaATC--CTTGTGTTCGTCGTTCACTTCTTCATTTCAATTCATTTAGTTTTATCCCT-
s caeRem4.Crem_Contig24   415397 193 -  1162296 ggagagTCCTCTGGTCTCTTGCAGTCTCGTGGTCGTCTTCTCTTCTGC-CACTACTCTCGCCGTCTCA---CCCTTTTCCCCACCCATTCTTTTCTATCCAAAAACACCCTCCCCtattctt-----------ctctctcttccacAACACAATCCCGCTGTGTTCGTTGTTCACttcttaattttcatttcaatttgaatttcattt
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold629   3431257 187 - 33334924 GAAGAGTCCTCTGGTCTCTTGCAGTCTCGTGGTCGCCTTCTCCTCCCTAAACAACTCTCGTTGTCTCACTCCCCTCCTCCCCACCCCTTCTTGTCT-TCCAAAAccaccccccccccctttt-----------ctttctcttccac-gCACACTC-------ATTCGTTGTTCACTTCTTAATTTCAgttcgcttctttttttcact-
i caeSp111.Scaffold629  C 0 I 118
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I

a score=-475.000000
s ce10.chrX               601798 79 + 17718866 GCTTCTGAAAATTGTTATTTATAGCCTGTTTTCTGGTGCACCACAGACATTACAATCCTGTGAATTCTCGTTT---CCTAGC
s caeRem4.Crem_Contig24   415590 49 -  1162296 tcttttcaatatca---------------------------cactcacattaaaatttc------TCTCGTCTAGACTtacc
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I
e caeSp111.Scaffold629   3431444 118 - 33334924 I

a score=-12462.000000
s ce10.chrX               601877 219 + 17718866 GAATTTTTTGACTTTC--TACCAC------TCTGTTTGTTTGCA-------------CCAACTCATACCCCTCCCCGTAAT-CTTTATGTACTGCTTGAAAAC-----------ATCGTCTTTA--------GGACCATGTGACTTTTTTGAGAAATATGCGCTCTTCGAAATCTTAGCGGTGT----TTGGTGACTGGGGTCCAGCAGAAATGCTATGTTTTCTTTAGAATTGCATTCATATAT---------TATATATTAAAACGTTGCT-----------------------
s caeRem4.Crem_Contig24   415639 146 -  1162296 -ttctttttcctctta--ttTCAA--ATCgtctgtttgtgtg---------------tctgtt-----------------tgcCCTGTAGAAT-CCTAAAAAC-----------TTTGTTTACA-------------------------CAAAAAT-------TTCTAAGACGTTT----CTAT-------------------------------TACGTTTTTCCTAGTTTAGTTgtggggttt-----------ttttttcaaacttttct-----------------------
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3431562 279 - 33334924 gagttttttcctttgatttttcagtcatgatttttttgcttgCAAAAAATGACTTAATCAGTTTAAAAACTTAGTCATAGTACTTTGTGAAAA-CTTTAAACTAAATTTGTACATCTGTCTAAATGAATTTAATATcttgtgaatttttcgagtag-------TTCTCAGGTTTTTAGAACTATTCAAGTGTAGGCTGAAGTTAA---------CTGAGTTCATCCAAGATTAGTAAGCCGATTCGGAGAAGCGCATGTTTTTATGctagttcaaaaatagtgaCGATCATATACG
i caeSp111.Scaffold629  I 118 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I
e cb4.chrX              21103980 990 - 21540570 I

a score=-7610.000000
s ce10.chrX               602096 118 + 17718866 TTTTATTTATGTTTGATCGCACAAATTTTTTTATCTTGTATCTAGTT----------------------------------------TTCTAGTTTGATTT--TTTTTCAGATTTGAATTTCATCACTTCATTCATCAAAACTGGATTTCATATCTATTC
s cb4.chrX              21104970  97 - 21540570 ttctatttctat-------------tttttttttttcgaa---aatc----------------------------------------tactCACCTTGTTTAGTTCTCGGATTTCGACCTCCTTCTTCCCGCT----AATCCTGG-CTTCGTACA--TCA
i cb4.chrX              I 990 C 0
s caeRem4.Crem_Contig24   415792  94 -  1162296 ctttttctctaG-------------TGTTCCAATTCTGA------------------------------------------------TTCTAATCTTACTCTGTTTTTTAGAACCCTCCCACCACTTTCCTTT--ACAACCCTGG-CTTCTCATC--TTC
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3431841 133 - 33334924 -TTTTATTTTA---------------GTTTCTGTTCTGAG---AATCATTTTCCGTAACTCTCTCATATTCAGTATTCCTAAGTCATTTTTAATgatacttcatttttt---ccagccTTTCTTTCTACCGTT--TCAACCCTGG-CTCCTAAAT--CTC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      121292 1712 +   258924 I

a score=148140.000000
s ce10.chrX               602214 357 + 17718866 ATCATGATGGCTCCAATAATTACAAAGGACATGAGGCTGTTTCCAATACACAAAGTGCCTGTAAAAAACGTTCGGAGTCGTGCTCAATCTCTTGACCACTTCCAACAAATTCAAGGCTCCGCTAGCACCATTGACCGGCTTGTTCCT---ATCAAGCCACGCGCCGCAATGTCAGCTGGAAATATCTCGGGTAAAACTTTGTCGAGTCGAACGAAACAAGTTGCTCCAATCAAG---TGTGCTCCGAGAAGTCCTCCAAAAACAATGCTGTCAAGGAAATCGACATTGACTGCAATTCAAGAAGGAGTGGAGTTGGCCGATCAGTCGCAATCTCATAAAATTATAAGCCATAGTCGGAGGTAA
s cb4.chrX              21105067 360 - 21540570 AATATGCTTGCCCCCATTATTACCAAGGATATGCGGTTGTTCCCAACCCATAAAGTGCCGGTGAAAAATGTTCGAAGTCGTGCTCAATCTCTTGACCACTTCCAACAAATTCAGAGCTCGGCGAGCACCATTGACAGGCTTGTGCCA---ATCAAGCCACGATCTGTGGTTTCTGCTGGAAACATTTCACAACGGCCGTCGACTAGTCGGAACAAACAAGTGATGGCGGCCGCGAAAAGTGCTCCACGCAGTCCGCCAAAGTCGATGATGTCGAGGAAATCTACGCTTACGGCGATCCAAGAAGGAGTTGAATTGACTGAGCAACCCACGTCGCATAAAATTATTAGCCATAGTCGGAGGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   415886 360 -  1162296 ACCATGCTTGCCCCAATCATAACCAAGGATATGCGGTTGTTTCCAACCCACAAAGTGCCGGTGAAAAATGTTCGAAGTCGCGCTCAATCTCTTGACCACTTCCAACAAATTCAGAGCTCAGCCAGCACAATTGATAGGCTTGTACCT---ATTAAACCGCGGTCGGCCGTTTCTGCAGGAAACATCGCCCAACGGCCATCGTCCAGTAGGACAAAACAAGTTGCACCCGCAAAGACTAGTGTGCCAAGAAGTCCGCCGAAGTCGATGATGTCCCGAAAGTCGACTTTGACAGCGATTCAAGAAGGTGTTGAATTGAATGAGCAACCGGTTTTGCATAAGAAAATTGGTCACAGCAAAAGGTGA
i caeRem4.Crem_Contig24 C 0 I 145
s caeSp111.Scaffold629   3431974 342 - 33334924 AAAATGCTGGCTCCAATCATAACCAAGGACATGCGGTTGTTTCCAACCCAGAGAgtaccggtgaaaaatgtTCGAAGTCGTGCTCAGTCTCTTGACCACTTCCAACAAATTCAGAGTTCGGCAAGCACAATAGACAGACTTGTGCCG---GTGAAGCCACGGTCTGCTGTGTCCGCAGGCAACATTGCTCAGAGAACGTC------CAGAACAAAGCAAGTGGCGCCGGTAAAG---AGTGCACCGAGGAGTCCCCCTAAATCTATGATGTCTCGGAAATCAACGCTGACTGCGATTCAGGAAGGAGTTGAATTGAGTGAACAGCCAGTTCCGCATAAAATTATAAGTCATAGC---------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      123004 351 +   258924 ACTATGCTAGCACCAATCATCACAAAAGACATGCGATTGTTTCCtactcaaaaaattcctgttAAAAACGTTCGAAGCCGTGCTCAATCGTTGGATCATTtacaaaaactgcaaaatagTTCCACTTCTATTGATAGACGTCCGCCATCCATAAAACCTAGAATATATGCTTCTACTGGCAAtatatctcaaaaaataac------tcgaaaCAAAGCAGTGGCCACGAAACCG------GCCCCCAAAAGCCCTCCAAAATTGATGGCCACACGGAAGTCAACGCTGTCTGCAATTCAAGAAGGGGTAGAGTTTTGCGACCAGTCATCATCACATATGCCTCTTAACCATAGTCGAAGGTAt
i caeJap4.Scaffold54    I 1712 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I

a score=60.000000
s ce10.chrX               602571 2 + 17718866 AT
s caeJap4.Scaffold54      123355 2 +   258924 gt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e cb4.chrX              21105427 0 - 21540570 C
e caeSp111.Scaffold629   3432316 0 - 33334924 C
e caeRem4.Crem_Contig24   416246 145 -  1162296 I

a score=-8323.000000
s ce10.chrX               602573 153 + 17718866 CGGGAATTAAACGATTTGAAAGTTTAGGAATTTGACGGAAAGCGAAAAAAAAGTGAAATTTGAATTTAATCACCTTTTAAACAATGCTCAAGTAAAATTGGTTTATACTCTCAGTATGGTCGTTGCCTAAAGCTGAGTCCTGGCGTTTTTGAA
s cb4.chrX              21105427  88 - 21540570 ----------GTAATTTTGGAtgaggagaatttttttgaaa-------------tgtatttGAATGAAACAAACATTT-------------------CTGATTAGTTctgt--------------tctggaatttctacTGAAT---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3432316  66 - 33334924 -----AAAAGGTGATT------------AACTTTTCTGCA------------------------------------TT-------------------TTGGTAGGTGCTCT-----------TTATCCAAAACATAATCTGATCG----TGAC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      123357   0 +   258924 C
e caeRem4.Crem_Contig24   416246 145 -  1162296 I

a score=300.000000
s ce10.chrX               602726 1 + 17718866 G
s caeSp111.Scaffold629   3432382 1 - 33334924 G
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      123357 1 +   258924 g
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e cb4.chrX              21105515 0 - 21540570 C
e caeRem4.Crem_Contig24   416246 145 -  1162296 I

a score=74719.000000
s ce10.chrX               602727 329 + 17718866 TTTTCCCTAGAGACATGCG------------ATTTTTACATATGA------CTGCATT-------AAAAGATCAAAATTCTTTTTGCTCTTTAGCCCATTTTTT-------CATCTTT-------------------------TTTTCCAGCGAATCGTCGAGCGTCCAAACGGAAGG------CACCGCAACAAAAAGTAGCTCCAAATCGAGCAGCGACGCGAACTTTGAAGAAAACGGTGCGAGCGCG---GAAATTGACGAAGAG---ACGAAAAAGAAGCAGCGCGGTGTGTTCAAGTGGATCACTAACACATTTCGAAAGTCATCACGGGATAAAACTCTTGACAATCGGAGTACTTCCTCTGGATGAGTGAGTTTTTT-TTTGTTATTG---GAT
s cb4.chrX              21105515 282 - 21540570 TTCTTTCGAGTGA--------------------------------------ATACATC------------------------------------------TATCTGAGGCATAACTTT----------------------------TATAGCGAATCGTCGAGCGTCATATCGGGGAGAGCTTCCACT---ACCAAAAGTAGCTCAAAATCAAATAGTAACACTAATTTGGAAGATAATGATGAAGAATCAGGAGATATCGACGAAGAGGACACAAAAAAGA---AGCGCGGTGTGCTCAAGTGGATCACCAACACGTTTCGAAAATCGTCACGCGATAAAACTCTTGACAATCGGAGTACTTCGTCTGGATGAGTGAGTGCATTCTTCATTGTTT------
i cb4.chrX              C 0 I 716
s caeRem4.Crem_Contig24   416391 375 -  1162296 ttctctctagggatattttctctttttctcatctcttCCGTATGATTGAGCATACACCACAcagaaaaagttcgaaaagc--TCCACTct------ccttttttggaaaaaagacgttttcccatttttttaaatcgcttttttCCTGCAGTGAATCGTCGAGTGTCCAATTGGAAGG------CACC---ACCAAAAACAGCTCCAAATCTAGCAGTGAGGCGAACTTGGAGGAAAATGGTGGCACAGGAGGAGAAGTCGACGAGGAGGAGACGAAAAAGA---AGCGCGGTGTACTGAAGTGGATCACCAACACATTTCGAAAGTCATCACGCGATAAAACTCTTGACAACCGGAGCACTTCCTCGGGATGAGTGAGTgcatt-tttgttgtgt------
i caeRem4.Crem_Contig24 I 145 C 0
s caeSp111.Scaffold629   3432383 342 - 33334924 TATTCCCGTGGGAAACAtgtttttaaact--ttttttccatctgact----gcacatt------------------------ttcacttttt--cacgtttttttccaagacgttttt------tgctctcaaatcaaaaattttttccagcgaATCGTCGAGTGTCCAAATGGAGAG------CGGC---ACAAAAAGCAGCTCCAAATCGAGCAGTGACGTAAACTTGGAGGAGAATACCGCC---------GAGATAGACGAGGAGGagacgaaaaagaagcagCGCGGTGTGCTCAAGTGGATCACCAACACATTTCGAAAGTCATCACGCGATAAAACTCTTGACAATCGGAGTACATCCTCGGGATGAGTGagtacttt-tttgtttttttgt---
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      123358 255 +   258924 --------------------------------------------------------------------------------------------ttttcttcttttctatcaacgttttt------------------cttttcttcatttagCGAGTCCTTCAGTGTCCATCTGGACAA------TACA---ATCAGCATAAACTCCAGGCCAActaaaaacaataattcaGAGGAAGACGGTTGC---------GATGTGGAGGAGGaagaaacgaaaaaga---agCGTGGCGTGTTAAGTTGGATCACTAACACATTTCGCAAGTCGACACGTGAAAAAACGCCAGACAACAGGAGCACTTCATCAGGATGAGCAAGGTGGCG-T---------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I

a score=531.000000
s ce10.chrX               603056 4 + 17718866 TTTT-
s caeRem4.Crem_Contig24   416766 4 -  1162296 tttt-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3432725 4 - 33334924 tttt-
i caeSp111.Scaffold629  C 0 I 604
s caeJap4.Scaffold54      123613 4 +   258924 -TTTG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e cb4.chrX              21105797 716 - 21540570 I

a score=683.000000
s ce10.chrX               603060 8 + 17718866 GAATTTGA
s caeRem4.Crem_Contig24   416770 8 -  1162296 aaaattga
i caeRem4.Crem_Contig24 C 0 I 718
s caeJap4.Scaffold54      123617 8 +   258924 AAATAAGA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e cb4.chrX              21105797 716 - 21540570 I
e caeSp111.Scaffold629   3432729 604 - 33334924 I

a score=505.000000
s ce10.chrX               603068 41 + 17718866 GAAAAGGGGCA----------ATAATGATTGGTTATTTAGACTTTATAAAT
s caeJap4.Scaffold54      123625 51 +   258924 GAAAGCAAGTAGTTTAATGCTATGAGAGCTAGTTATTTCGAAATactaaat
i caeJap4.Scaffold54    C 0 I 1524
e caePb3.Scfld02_254      161423 414 +   193288 I
e cb4.chrX              21105797 716 - 21540570 I
e caeSp111.Scaffold629   3432729 604 - 33334924 I
e caeRem4.Crem_Contig24   416778 718 -  1162296 I

a score=0.000000
s ce10.chrX               603109 1477 + 17718866  
e caePb3.Scfld02_254      161423  414 +   193288 I
e caeJap4.Scaffold54      123676 1524 +   258924 I
e cb4.chrX              21105797  716 - 21540570 I
e caeSp111.Scaffold629   3432729  604 - 33334924 I
e caeRem4.Crem_Contig24   416778  718 -  1162296 I

a score=397.000000
s ce10.chrX               604586 57 + 17718866 AAAGCAGTTTCAAAC-TGTACATCAAGAATTTTCAAAGTTTGAATTACATTTGA--------------ATTA
s caeSp111.Scaffold629   3433333 72 - 33334924 aaaatagcttCAGACATGCCAGtaaatagttttcagataGAAAATTTACTTTGAGTAGAGTGGTGAAAATAA
i caeSp111.Scaffold629  I 604 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      123676 1524 +   258924 I
e cb4.chrX              21105797 716 - 21540570 I
e caeRem4.Crem_Contig24   416778 718 -  1162296 I

a score=-6482.000000
s ce10.chrX               604643 352 + 17718866 TTAATATTTT-CAGCAATAGCTAC-GCGGCCAATATTTGTTCGGCTGCCAACATTCCCT-----TCCTGGCTTATTATTCTGTAGAAATGTTTAATATTGTGATTTTTATTCCAAAAACCTTTCTCTCATACTTTCTTGTCAGTTTC----------TC-CACATTTTCCATCTCA-----------------------TCCTCCTCATCTACACACCGG-----TTTTCCATTTGTACATATGTTCTATC------TCACATACTTTGTGACCCAAATTCCCAGTGCTTTG-----TTTTATTTTTACCACTTCGCTAAATTCCTAAA---------------------TTTCCA-----------CCGTAGTCTTACTGTGATGACAACTTTTGTTGAAA----AAAAA------TCAAATAAAGGTTTTTTGTCGTTTAAAAGTAATG------------
s caeRem4.Crem_Contig24   417496 405 -  1162296 tta--atttttcagcattaaCTCC-GCAGCCAACAACGATTTGACTGC--ACCTTCTCTCCAACTTCTTCTATCTTACTGTATA---CTTTTTGATTAGCTCACTCTT-TTCCCATCATCTCACACTCATAATTTCC--CAAATCTCACAACCTTCTTCTCCCCCATTCCATCTCAAAGTGTTGTATAAGAACATCCATGCCTCCC---------ACCGG-------TTCATATTGTACATATGTTGTATA-------TTCTTACATTGTAAT----TTCTTTTGTGCTGTGCAttttttttAGCTATAGACTTCTCTAAAATTCCATGTAGTAAAAAACCGCTGTGATTTTTCCATAAATgccattttgtattttt-------taaaggttcatattataaaaacaaaaacgtttatgaaattcagatttttc-cagtttgaaTGTAAGA------------
i caeRem4.Crem_Contig24 I 718 I 33
s caeSp111.Scaffold629   3433405 338 - 33334924 TTAACATTTTACAGCATTAACTCCGGCAGTCTTCCAC--TTCGGCTG----------CTGAATTTACGTGTTCATAATTGTATA-----------------------------------GTCACTCTAGAAATTTTC-GCCAGTCTC----------TCTCCCAGTTTCAATCTCAAA------------CGCACATAGTCCTCCTGA-------ACCGGTTTTATTTTTGCCTTGTACATAATCTTTGTAAaatttttcccttctttgTAGT----AGTGTCAGTAATGTG-----TTTCCTGTGATTTactcctgaaaaatctcg-----------------------tTTACAAGAATTGTTTATCGTTGTTTT-------TGACAAATAAATTGATAA----CACGacgttt-ttcaataaagatTGTTC-CAA---GAATGAGAGGGTCGAAAAAATG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      123676 1524 +   258924 I
e cb4.chrX              21105797 716 - 21540570 I

a score=-766.000000
s ce10.chrX               604995 38 + 17718866 ATCGGGAAAGGGAAAGTCG------------ATTCAATAA---------------------ATTCGGAGTT
s cb4.chrX              21106513 29 - 21540570 atcgaaaaaaagaaagaaa------------------------------------------attgtgaaat
i cb4.chrX              I 716 C 0
s caeRem4.Crem_Contig24   417934 71 -  1162296 ttcgaaaaaagaaaaaaaaagagtcgggaaatatcgaaaagtcggaaaaaatcggatcgagattgtgaaaa
i caeRem4.Crem_Contig24 I 33 C 0
s caeSp111.Scaffold629   3433743 43 - 33334924 Atcgaaagaaagagagaga----gagagaaatttcgg------------------------attttggGTC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I
e caeJap4.Scaffold54      123676 1524 +   258924 I

a score=-8105.000000
s ce10.chrX               605033 24 + 17718866 AAATCGATGAAAAA------CACAAAT-TTC------------
s cb4.chrX              21106542 17 - 21540570 gcAAGG----AATA------TTAAAAT----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   418005 21 -  1162296 gaaatgagaaaagg------taGAATT----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3433786 22 - 33334924 GGATCGAGAGACTA------GTACAatt---------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      125200 39 +   258924 aaatcgatgaaaaatgTGTGTTAAACT----ACACAATATGTT
i caeJap4.Scaffold54    I 1524 C 0
e caePb3.Scfld02_254      161423 414 +   193288 I

a score=136482.000000
s ce10.chrX               605057 168 + 17718866 TTATGGCTTCTGAAGATCGTCAGCGTATTCATCACCCTTCTTCGTGAGCTTCCAAACTCCGAGAACAAAGAAAAATCCGAAGATGAGTGCGAGAAGGATGGCTTTGAAGATCAGCTCAAGGTTGCTTGGCTCAAATTCCAAGTCAACCAATTCCTCGGTCTGAAA----TTT
s cb4.chrX              21106559 165 - 21540570 TTATGCCTTTTGAAGATCATCAGTGTATTCGTAACCCTTTTTCATCAACTTCCAGACAccgaggaagaagaaaaatccaaaagttaaTCCGAGAAGGATAGCCTTGAAAATGAGCTCAAGGTTGCTTGGGTTGAATTCCAAATCGACCAACTCTTCAGTctgtaa-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   418026 165 -  1162296 TTAGGCTTTTTGAAGATCATCGGCGTAGTCGTCACCCTTCTTCATAAGCTTCCAGATGCCGAGGACGAAGAAGAAGCCGAAAGTGAGTCCCAGAACAATAGCCTTGAAGATCAATTCGAGATTGCTTGGATCGTACTCGATGTCAATCAATTCGTCGGTCTGAAA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3433808 168 - 33334924 ttatggtttttgaagatcATCAGCGTACTCATCACCCTTCTTCATGAGTTTCCAGATACCaaggatgaagaagaatccAAATacaaggaagagaaggacgGCCTTGAAGATTAACTCAAGATTGCTTGGATCGAATTCCAAATCGACCAATTCATCGGTCTGAAA----GTT
i caeSp111.Scaffold629  C 0 I 948
s caePb3.Scfld02_254      161837 168 +   193288 tcaagccTTCTGAAGATCATTGGAATAGTCGTCTCCTTTTTTCATGAGTTTCCAGAGACCAAGGACaaagaagaaaccaaaaatgagTGTAAGAAGAACTGCTTTGAAAATAAGTTCCATGTTGCTTGGATCAAACTCCAAGTCGATAAGTTCTTCTGTCTGTAA----TTT
i caePb3.Scfld02_254    I 414 C 0
s caeJap4.Scaffold54      125239 172 +   258924 TTATGCTTTCTGGAGATCATCAGTGTActcttcctcttttttcgTGAGCTTCCAAACACCAAGAAcaaagaaaaatccaaaaataagACCCAAAAGGACAGCTTTAAAGATTAATTCCATGTTGCTCGGCTCAAACTCCAAGTCGACAAGTTCGTCTACCTGAAAGGAATTT
i caeJap4.Scaffold54    C 0 C 0

a score=-3231.000000
s ce10.chrX               605225  9 + 17718866 AGAA----AATGT
s cb4.chrX              21106724  7 - 21540570 --aa----aatgt
i cb4.chrX              C 0 I 850
s caeRem4.Crem_Contig24   418191 11 -  1162296 --AAGAGTAATTT
i caeRem4.Crem_Contig24 C 0 I 5
s caePb3.Scfld02_254      162005  9 +   193288 ----ATTCAATAC
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      125411  9 +   258924 ----AATAAAGGT
i caeJap4.Scaffold54    C 0 I 24
e caeSp111.Scaffold629   3433976 948 - 33334924 I

a score=-1614.000000
s ce10.chrX               605234 10 + 17718866 GTTTTTTTGC-----
s caeRem4.Crem_Contig24   418207 10 -  1162296 -ATTCTTTATT----
i caeRem4.Crem_Contig24 I 5 C 0
s caePb3.Scfld02_254      162014 10 +   193288 -----TTGATTTTGC
i caePb3.Scfld02_254    C 0 I 425
e caeJap4.Scaffold54      125420 24 +   258924 I
e cb4.chrX              21106731 850 - 21540570 I
e caeSp111.Scaffold629   3433976 948 - 33334924 I

a score=1249.000000
s ce10.chrX               605244  92 + 17718866 GT-----AGTGGAACCGTA-----AGAACAAGTTTTTTGGAA--CGCGTGACGTACTCGATTACAGACCACAGGAAAGACTGAAATTGTTTTTTTGCTTTGTTT
s caeRem4.Crem_Contig24   418217 100 -  1162296 GTCATTGGGTGGAACTGGATAGCTAGAACtagtttttcgaaagtaaTGTGACGT--CAGATAAC--ATCATTGGAACGGTCCAGCTAatttttttacacttttt
i caeRem4.Crem_Contig24 C 0 I 950
e caePb3.Scfld02_254      162024 425 +   193288 I
e caeJap4.Scaffold54      125420  24 +   258924 I
e cb4.chrX              21106731 850 - 21540570 I
e caeSp111.Scaffold629   3433976 948 - 33334924 I

a score=0.000000
s ce10.chrX               605336 1781 + 17718866  
e caePb3.Scfld02_254      162024  425 +   193288 I
e caeJap4.Scaffold54      125420   24 +   258924 I
e cb4.chrX              21106731  850 - 21540570 I
e caeSp111.Scaffold629   3433976  948 - 33334924 I
e caeRem4.Crem_Contig24   418317  950 -  1162296 I

a score=583.000000
s ce10.chrX               607117 23 + 17718866 CACTCTTTGTATAGCCCCATATC
s cb4.chrX              21107581 23 - 21540570 CAGTCTCTATCTACGCTCAAGTC
i cb4.chrX              I 850 C 0
e caePb3.Scfld02_254      162024 425 +   193288 I
e caeJap4.Scaffold54      125420 24 +   258924 I
e caeSp111.Scaffold629   3433976 948 - 33334924 I
e caeRem4.Crem_Contig24   418317 950 -  1162296 I

a score=-1336.000000
s ce10.chrX               607140 25 + 17718866 TAGAGTACGTTCTGATGTGTTTTGA------
s cb4.chrX              21107604 25 - 21540570 ------ATATTTTGAACTGTTTTTGCCCCGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3434924 25 - 33334924 TAAA--ACCCTTTCAA----TTTTATCATGT
i caeSp111.Scaffold629  I 948 C 0
e caePb3.Scfld02_254      162024 425 +   193288 I
e caeJap4.Scaffold54      125420 24 +   258924 I
e caeRem4.Crem_Contig24   418317 950 -  1162296 I

a score=-1107.000000
s ce10.chrX               607165 1 + 17718866 A-
s cb4.chrX              21107629 1 - 21540570 -T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3434949 1 - 33334924 A-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      162449 1 +   193288 a-
i caePb3.Scfld02_254    I 425 C 0
e caeJap4.Scaffold54      125420 24 +   258924 I
e caeRem4.Crem_Contig24   418317 950 -  1162296 I

a score=3025.000000
s ce10.chrX               607166 4 + 17718866 ACTC
s cb4.chrX              21107630 4 - 21540570 ACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   419267 4 -  1162296 ACTT
i caeRem4.Crem_Contig24 I 950 C 0
s caeSp111.Scaffold629   3434950 4 - 33334924 ACTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      162450 4 +   193288 aCTC
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      125420 24 +   258924 I

a score=273651.000000
s ce10.chrX               607170 487 + 17718866  
s cb4.chrX              21107634 478 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   419271 476 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 248
s caeSp111.Scaffold629   3434954 432 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      162454 480 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      125444 480 +   258924  
i caeJap4.Scaffold54    I 24 C 0

a score=422.000000
s ce10.chrX               607657 1 + 17718866 a
s cb4.chrX              21108112 1 - 21540570 A
i cb4.chrX              C 0 I 23
s caeSp111.Scaffold629   3435386 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      162934 1 +   193288 A
i caePb3.Scfld02_254    C 0 I 78
s caeJap4.Scaffold54      125924 1 +   258924 g
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=-1449.000000
s ce10.chrX               607658  8 + 17718866 -aataa-------------ttt
s caeSp111.Scaffold629   3435387 21 - 33334924 -ACGAACACaactctcaatttt
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      125925  8 +   258924 aaaaaa-------------tt-
i caeJap4.Scaffold54    C 0 I 28
e caePb3.Scfld02_254      162935 78 +   193288 I
e cb4.chrX              21108113 23 - 21540570 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=1370.000000
s ce10.chrX               607666 41 + 17718866 tttaaaaaatatttttaatGTTCGAGTTTAAATTAGTGTTT
s caeSp111.Scaffold629   3435408 36 - 33334924 tttaaaatatgtttttga-----aaacatgaattATTGTTT
i caeSp111.Scaffold629  C 0 I 9
e caePb3.Scfld02_254      162935 78 +   193288 I
e caeJap4.Scaffold54      125933 28 +   258924 I
e cb4.chrX              21108113 23 - 21540570 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=0.000000
s ce10.chrX               607707 644 + 17718866  
e caePb3.Scfld02_254      162935  78 +   193288 I
e caeJap4.Scaffold54      125933  28 +   258924 I
e cb4.chrX              21108113  23 - 21540570 I
e caeSp111.Scaffold629   3435444   9 - 33334924 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=220.000000
s ce10.chrX               608351 5 + 17718866 TCCAA
s cb4.chrX              21108136 5 - 21540570 TTCGA
i cb4.chrX              I 23 C 0
e caePb3.Scfld02_254      162935 78 +   193288 I
e caeJap4.Scaffold54      125933 28 +   258924 I
e caeSp111.Scaffold629   3435444 9 - 33334924 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=273.000000
s ce10.chrX               608356 1 + 17718866 T
s cb4.chrX              21108141 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3435453 1 - 33334924 T
i caeSp111.Scaffold629  I 9 C 0
e caePb3.Scfld02_254      162935 78 +   193288 I
e caeJap4.Scaffold54      125933 28 +   258924 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=546.000000
s ce10.chrX               608357 1 + 17718866 A
s cb4.chrX              21108142 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3435454 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      125961 1 +   258924 A
i caeJap4.Scaffold54    I 28 C 0
e caePb3.Scfld02_254      162935 78 +   193288 I
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=910.000000
s ce10.chrX               608358 1 + 17718866 A
s cb4.chrX              21108143 1 - 21540570 A
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold629   3435455 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      163013 1 +   193288 a
i caePb3.Scfld02_254    I 78 C 0
s caeJap4.Scaffold54      125962 1 +   258924 A
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   419747 248 -  1162296 I

a score=109566.000000
s ce10.chrX               608359 453 + 17718866  
s cb4.chrX              21108148 538 - 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   419995 495 -  1162296  
i caeRem4.Crem_Contig24 I 248 C 0
s caeSp111.Scaffold629   3435456 438 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      163014 446 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      125963 472 +   258924  
i caeJap4.Scaffold54    C 0 I 1938

a score=8431.000000
s ce10.chrX               608812 46 + 17718866 TCACAATGACAACGACAAACTTCTGCA------CAGTCCAGCATTTCAAATA-----------
s cb4.chrX              21108686 46 - 21540570 tcacaGCGACTATGACAAACGTTTGCA------TTCTGCAGTACTGCCGATT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   420490 38 -  1162296 TCACAGTGACAACGACAAACTTCTGCA------CAGTCCATT--------TT-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3435894 45 - 33334924 TCACAGTGACAACGACAAACTTTTGCAGCAGACCATTTAACT--------TTT----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      163460 49 +   193288 TCACAGTAGGAGTGGAAAACTTCAGCA------CATCCCAAT--------TTTATCCCAAATA
i caePb3.Scfld02_254    C 0 I 5961
e caeJap4.Scaffold54      126435 1938 +   258924 I

a score=3203.000000
s ce10.chrX               608858 26 + 17718866 ----ACCAAAACCAAATACTAGTGAAGAGA---------
s cb4.chrX              21108732 30 - 21540570 CTCTCACCAAATCAAATATTAGAACAGAAA---------
i cb4.chrX              C 0 I 1601
s caeRem4.Crem_Contig24   420528 30 -  1162296 ACCTTGCAAGATCAAATattagaaaacgag---------
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3435939 35 - 33334924 ----AGTCAAAtcaaatattaaaaaacgACAGAAAGAGG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I

a score=3765.000000
s ce10.chrX               608884 25 + 17718866 ----GATGGATGTTAACGTAGTAATGCAC
s caeRem4.Crem_Contig24   420559 25 -  1162296 ----aaaaaatgttaacgTAGTAATGCAC
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3435974 29 - 33334924 GATGAGGGGATGTTAACGGCGTAAAGTAC
i caeSp111.Scaffold629  C 0 I 940
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I
e cb4.chrX              21108762 1601 - 21540570 I

a score=471.000000
s ce10.chrX               608909 9 + 17718866 ACAATAGTT
s caeRem4.Crem_Contig24   420584 9 -  1162296 GCAGCAGTT
i caeRem4.Crem_Contig24 C 0 I 1450
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I
e cb4.chrX              21108762 1601 - 21540570 I
e caeSp111.Scaffold629   3436003 940 - 33334924 I

a score=0.000000
s ce10.chrX               608918 2076 + 17718866  
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I
e cb4.chrX              21108762 1601 - 21540570 I
e caeSp111.Scaffold629   3436003  940 - 33334924 I
e caeRem4.Crem_Contig24   420593 1450 -  1162296 I

a score=1978.000000
s ce10.chrX               610994 126 + 17718866 CTGAGCTTCTGCTCAATCGAACG------CATTGTTTAACATAAGATTTATGACGCGTCGTCGCCGATTACAAATCTCCCGTCTCTTGACAACATTTC-CATGGTTACATTTTAGTTTTTTTGAGTTTTTCTG
s caeSp111.Scaffold629   3436943 122 - 33334924 CTCAGTTTCTGCGTGATCATACAACTTTTTATTGTTTAACATGAGATTTATGACTGGT----GCACACTACATTTCTCTCCACTTTCCCAAATATTTCACATGA--AGATTCAAATGTATTGAAGGT-----G
i caeSp111.Scaffold629  I 940 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I
e cb4.chrX              21108762 1601 - 21540570 I
e caeRem4.Crem_Contig24   420593 1450 -  1162296 I

a score=1484.000000
s ce10.chrX               611120 6 + 17718866 CCGAGT
s caeRem4.Crem_Contig24   422043 6 -  1162296 CCGAgt
i caeRem4.Crem_Contig24 I 1450 C 0
s caeSp111.Scaffold629   3437065 6 - 33334924 TCGAGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I
e cb4.chrX              21108762 1601 - 21540570 I

a score=-339.000000
s ce10.chrX               611126 5 + 17718866 AAACA--
s cb4.chrX              21110363 5 - 21540570 aaatt--
i cb4.chrX              I 1601 C 0
s caeRem4.Crem_Contig24   422049 5 -  1162296 aaatg--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3437071 6 - 33334924 -AATTGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      126435 1938 +   258924 I

a score=38234.000000
s ce10.chrX               611131 65 + 17718866 TTTA-----TTTATAATACAGCGGACACAATATGCACGAACCATTGATATGTC--AAAAGACATGGGAAAAG
s cb4.chrX              21110368 67 - 21540570 ttta-----tttataatACAAAGAAGAGAATATGCACGAACCATTGATATGTCAAAAAAGACATGGAAAAGG
i cb4.chrX              C 0 I 343
s caeRem4.Crem_Contig24   422054 67 -  1162296 ttta----ttttataATACAGCGGACACAATATGCACGAACCATTGATATGTC-AAAAAGACATGGGAAAAG
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold629   3437077 69 - 33334924 TTTATTGTTCTTATAATACAGCGGACACAATATGCACGAACCATTGATATGTC-ACAAAGACATGGGAAA--
i caeSp111.Scaffold629  C 0 I 6
s caeJap4.Scaffold54      128373 64 +   258924 TTTA-----TTCATTGTACAACAGAGA-AATATGCACAAACAATTGATATGTC-CAAAAGACATGGGAAAA-
i caeJap4.Scaffold54    I 1938 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I

a score=-26501.000000
s ce10.chrX               611196 101 + 17718866 GAGTAAGG---------------------------------------TTTAAATAGATAATTGTGTAGT---------------------TTT--TTTTTTTCATTTTTAAGT-------GGCCAGACTTGTGGAGACT--ATGCACAAAACT------AAAAG----ATTTTTTTTG-----------------------------------------------------------------------------AAAT
s caeRem4.Crem_Contig24   422126 253 -  1162296 AAATATGTGTGTATTGAAATGAGAAGCGGAAAAACATTTGATTGATGATTAAAAAGTTAATGATGCTATACACGCGACTATAAAGAGTGactt--ttttttgggattttcagcAT----AGATTAGATTTTTGGTTATCGAATGCACTTGGTTAACATAAAGAAGCGTACTCGTTTGGTGAGTAACTCCCGATTacaaaatgacagaaaattaGTTCAAAACGTTTGTtgtttcacttcaaaaatatgagttttcaAAG
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3437152 120 - 33334924 AAATATGT-TGT-----------------------------------GTTAAAGAGTT-Ttggtgtttt-------tttttgaaaagtagttt--tttgaatgggtGTTAAT--------GATCGGATACT----------ATACACGCGACT------AAAAAgagtgattttttgg---------------------------------------------------------------------aagttttcagaa
i caeSp111.Scaffold629  I 6 C 0
s caeJap4.Scaffold54      128437  69 +   258924 --------------------------------------------------------------ATGTATC--------------GGATTGATTTGAGTTCACAGAATAGTGAAAATAGAAAGATAAAAC-------------ATTGGCGTGCTT------AAAAT-----------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 I 103
e caePb3.Scfld02_254      163509 5961 +   193288 I
e cb4.chrX              21110435 343 - 21540570 I

a score=-1056.000000
s ce10.chrX               611297 41 + 17718866 TGAACAGGTTTTAATGAAGATTTGA-----AAA----TATTGTGTTACTA-------
s caeRem4.Crem_Contig24   422379 53 -  1162296 TAAACGGGATTCAAACGAGATTTTGTTCATTAA----AAtggttttcaaagttttca
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold629   3437272 56 - 33334924 agaatagGATAGAATTACAATTTTGGTGATAAATGAGTATTATATTGAAGTTATTC-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      128506 103 +   258924 I
e cb4.chrX              21110435 343 - 21540570 I

a score=3129.000000
s ce10.chrX               611338 32 + 17718866 AAAACTAGAAGTGAAAAA------------AGAAGAAATTGTTT
s cb4.chrX              21110778 38 - 21540570 AAAGCtagaagtgaaaaaagacaga-----aaaag-acttgttt
i cb4.chrX              I 343 C 0
s caeRem4.Crem_Contig24   422438 39 -  1162296 caaaatagaAGTGAAGAGAGACGAA-----AACAGTAATGGTTA
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold629   3437328 36 - 33334924 -----AGAAAGTGCATAG---CAGATTACTAAAAGCAACTGTTT
i caeSp111.Scaffold629  C 0 I 42
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      128506 103 +   258924 I

a score=-1326.000000
s ce10.chrX               611370 24 + 17718866 TTTTTTGGGAGGAAAGAGGCGGGT
s cb4.chrX              21110816  4 - 21540570 tttt--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   422477 10 -  1162296 CTTTCTCGGA--------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e caeJap4.Scaffold54      128506 103 +   258924 I
e caeSp111.Scaffold629   3437364 42 - 33334924 I

a score=-1560.000000
s ce10.chrX               611394 6 + 17718866 GGATTG-
s caeRem4.Crem_Contig24   422487 2 -  1162296 ----TC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      128609 6 +   258924 -aaatag
i caeJap4.Scaffold54    I 103 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I
e cb4.chrX              21110820 0 - 21540570 C
e caeSp111.Scaffold629   3437364 42 - 33334924 I

a score=-16285.000000
s ce10.chrX               611400  85 + 17718866 AAAAATATTTGGAGA------ATAATCATCCGACGATGT----AATAGGCAGGT-----AGGTGAGCTTTGAAAAACATCCGAAAAGAG-------------GAACAA-------------------AGAAA
s cb4.chrX              21110820  65 - 21540570 ------------------------tgtatccgG---TGTAGATAATTGGCGGTTAT---agttgagttcaaaaaatc-----taaagaa-------------aaacaa-------------------aaaaa
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24   422489  72 -  1162296 ---------------------AACTGTATCCGGAAATGCATATAATTGGCAGGTATGAGAGCTGactttgattga-------aaaaaga-------------agacaa-------------------agaag
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold629   3437406 121 - 33334924 aataatttttgaaggttcCAGAAAgttatctga-aattta---aattggCAGTTATACGAGCTGAGtgttgaaaa-------caagagatgTTGTCTGGGATAGACAACATAATAATGTAGCcggggaaaaa
i caeSp111.Scaffold629  I 42 I 5
s caeJap4.Scaffold54      128615  64 +   258924 aaaaacGAATAACAGTTCTACATAGAAGGACAGTTATGC----AACAAGAAGACgt---atttaaatttaa-------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I

a score=-1943.000000
s ce10.chrX               611485 12 + 17718866 AAAAA---------ATTGAGT
s caeRem4.Crem_Contig24   422563 20 -  1162296 AAGAGTGTTCTAACATTGGT-
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold629   3437532 12 - 33334924 aggag---------aCGGGAT
i caeSp111.Scaffold629  I 5 C 0
s caeJap4.Scaffold54      128679 12 +   258924 acaCA---------ACTGATT
i caeJap4.Scaffold54    C 0 I 19
e caePb3.Scfld02_254      163509 5961 +   193288 I
e cb4.chrX              21110885 11 - 21540570 I

a score=-4128.000000
s ce10.chrX               611497 32 + 17718866 TTGTTGTCT--TGGATAGACAACG--------------------------------------GTTTTTTCAT
s cb4.chrX              21110896 64 - 21540570 TTGTTGTCT--TGGGCAGACAACATGACAATGTAAGATgagaagaaaa------caaatcaTGTTCTTCGCT
i cb4.chrX              I 11 I 9
s caeRem4.Crem_Contig24   422583 69 -  1162296 GTGTTGTCT--TGGATAGACAACAAAATAATGT-AGCCGGGaagaaaaaacgggaaaatctCGATGTTCACT
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3437544 24 - 33334924 ------------------------------------------------GatacaaaaattcagatgtTCCAT
i caeSp111.Scaffold629  C 0 I 6
s caeJap4.Scaffold54      128710 44 +   258924 ttgttgtcttGTGAAAAGACAACA------------------------ATTTATAAAA----GTTTTTTGAT
i caeJap4.Scaffold54    I 19 C 0
e caePb3.Scfld02_254      163509 5961 +   193288 I

a score=62870.000000
s ce10.chrX               611529  96 + 17718866 ----------CTAAAGTTTAGTCATCTAATGGGTC---TTCATAATCATCGTAGTCCGGGTCTCTGTACTCTGTGAATCGGCTTGTTACTGGACGATTTCTGAAAA----------------AAA-----
s cb4.chrX              21110969  93 - 21540570 ----------tgaaaattcaatcGTCCAACGGATC---CTCATAATCGTCGTAATCTGGATCTTGATAATCGGTGAAGCGGCTAGTAACTGGacggtttctggaaa------------------------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24   422659  99 -  1162296 ----------CCGAAGTTTAGTCATCCAGTGGATC---CTCGTAATCATCAAAGTCAGGATCTCTGTATTCGGTGAAGCGGCTGGTGACTGGgcggtttctgaaaaa-------------tcaaa-----
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3437574  96 - 33334924 ----------CCGAAGTTTAGTCATCCAATGGGTC---CTCATAGTCATCAAAGTCTGGATCTCGGTATTCAGTGAATCGGCTTGTTACTGGGCGGTTTCTgcaag----------------aaa-----
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_254      169470  96 +   193288 ----------CTTATGTTCAATCGTCCAATTGATC---GTCATAGTCGTCATAATCTGGATCTCTGTATTCCGTGAATCGGCTAGTAACTGGtcggtttctggaaa----------------aaa-----
i caePb3.Scfld02_254    I 5961 I 292
s caeJap4.Scaffold54      128754 130 +   258924 ATGCGTTATGACAGGGCTCAGTCCACCAACATATCGTTGTCATAGTCCTCGTAATCGGGATCTCGATACTCTGTGAACCTGCTTGGTGTTGGACGgtttctgtaatgtttttgaatgtttttgaatgatt
i caeJap4.Scaffold54    C 0 C 0

a score=-634.000000
s ce10.chrX               611625 10 + 17718866 TTGTTGTTTT---
s caeRem4.Crem_Contig24   422758 10 -  1162296 agattgTTTT---
i caeRem4.Crem_Contig24 C 0 I 141
s caeSp111.Scaffold629   3437670  5 - 33334924 ---atgtt-----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      128884 10 +   258924 ---ttgtttcttt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e cb4.chrX              21111062  0 - 21540570 C

a score=1013.000000
s ce10.chrX               611635 7 + 17718866 TTTTTTA
s cb4.chrX              21111062 7 - 21540570 ttttcga
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      128894 7 +   258924 ttttttg
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeSp111.Scaffold629   3437675 0 - 33334924 C
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=-15557.000000
s ce10.chrX               611642 322 + 17718866 TATTGGCAGGCAAA--------ATTGGGGAGTTGTGCAGGGATATGAAAAAGTGTAGATAGTAGGTAGACATTTAAGGGTTTAACAAGTAGTTATGCCCACCGCAATAAGGAAATTAATTTTGC----------GAGAAATGAAAAATCTTGTAAAT-------------TTTTATTTATAGGCCCAACACGTTTGACTTTGGGAGCATGTATGGTGTTCTTTTCAGCTTTTTTCTTCAGTTTAAAAATTTGGAACGtattttatttaaaatgaattaaaaaatttcaaacaaaaaaaaaaGATCTTGCGTTTTCAAAAACACGAAAAAAAAATAGAATAAATATTGAAGCTG----
s cb4.chrX              21111069 206 - 21540570 tattg---tGCAAATATGTTTTGTTGAAATAAtgtgttagaaaaaaaaacaacatgaA-----------------------------------------------------GGATTAATTACGATAGGTAAGACTTTAaatcata---cttgcaaaatcaggacCCGGCCCGTGACTCCTCGGCCCGGCCC-------------AGCGGGTCTgg-gttc----------------------tccaaatttgaaaagaaatt--ttgaaa----tttcagaaattt-----------------tttcaaattttt---------------------------------ttgtgaaag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3437675 120 - 33334924 -------------------tcatttgaaaagttgtG------------ATATCATCGA-----------------------------------------------------AAATTAGTTTGGA----------GTGaaaacaaa---cttagagaa-------------------------------------------------catatatag---------------------------ttaaaacataaaaaaggttg--ctaaaaat--gtttaaaaat-----------------------aagttttt---------------------------------agctg----
i caeSp111.Scaffold629  C 0 I 11
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901   0 +   258924 C
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=-210.000000
s ce10.chrX               611964 40 + 17718866 GACTAATCTTCA-GAAGACTCATAGATACTGCTATAAGTAG
s cb4.chrX              21111275 24 - 21540570 aactattttttatgaatactctta-----------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901  0 +   258924 C
e caeSp111.Scaffold629   3437795 11 - 33334924 I
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=-7181.000000
s ce10.chrX               612004 165 + 17718866 TTCAAAATCACAGAAAAGTGTTTTTGTTTGTTTGAAACA------------ATTTAAAGCGACACTGAATCATA---TTG-AATTTGGACGATTTTCCGGTTAATTTTTCTGTAACCATTTATTAGGAGAAActgatttccaaatcggtaaattggcaaattggaggaat--tttaaattttc
s cb4.chrX              21111299 149 - 21540570 -------tcttgaaaaaatgttttt-cttattagaaaaatcgtccattt--ttttctgttgacccc-aaaaatatttttgaaagacagaaaatt----------tttttccgaaaatccgggccttgaaaa------ttct-------gaaaaaggcccgttgcaagtatgctttAAATTTTC
i cb4.chrX              C 0 I 30
s caeSp111.Scaffold629   3437806 120 - 33334924 ttc---atagtccaataaagttttt-cttttctga------tttcattcaatttctagGTGA-----AAACATA---TGAAAATACAGA----------------TTTGCCGAAAACTTTGATCcagata------------------gaaagaaa--------aactatccttaggaat---
i caeSp111.Scaffold629  I 11 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901   0 +   258924 C
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=-417.000000
s ce10.chrX               612169 36 + 17718866 gccatttcagcaaaccggcaaattgccgatctgcaa
s caeSp111.Scaffold629   3437926 30 - 33334924 ---atttttgaaaa---gaatattcTAATACTGTTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901  0 +   258924 C
e cb4.chrX              21111448 30 - 21540570 I
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=964.000000
s ce10.chrX               612205 5 + 17718866 agttt
s cb4.chrX              21111478 5 - 21540570 agttt
i cb4.chrX              I 30 C 0
s caeSp111.Scaffold629   3437956 5 - 33334924 AGTAT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901 0 +   258924 C
e caeRem4.Crem_Contig24   422768 141 -  1162296 I

a score=-4935.000000
s ce10.chrX               612210 59 + 17718866 tccgaaaaaaacggcttcaaaaa----cggcaaaaGTTCATGCAACATTGCTCAAAGTTTTTT
s cb4.chrX              21111483 33 - 21540570 --------------------------ttttaaatattttgtccGACAACGT----CCGATTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   422909 63 -  1162296 TCCTCAgaaattgacttgaaaaaatctttgaaaaaatttcttcaaccgtgtgaaaaaaatttg
i caeRem4.Crem_Contig24 I 141 C 0
s caeSp111.Scaffold629   3437961 39 - 33334924 ---------------TGcgtgaaaacttgaaaaatataggTACAAGCTTGA---------TTG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      169566 292 +   193288 I
e caeJap4.Scaffold54      128901  0 +   258924 C

a score=-2434.000000
s ce10.chrX               612269 51 + 17718866 TTTTCCAACTTAT--------CGAAACGTCAATAT-TAGTGAAAAA-------TAAAAAGTTAGTAT
s cb4.chrX              21111516 42 - 21540570 ACGCCTAATTTTC---------------GAAGGGT-TAGT--AAAA-------CATAAAGTTAGTAC
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   422972 41 -  1162296 ttgaacaaaatGC----------------AAGGAT-TAGT--TGAA-------CATAAAGTTAGTGT
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3438000 35 - 33334924 TT-ATCAATTTAT--------------------GT-TAGT---GAA-------CATATAGTTAGTAC
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      128901 65 +   258924 tttttaaatccATGCTGTTATCTTATAGTACATATATAGT--TAAAAGTGTgttaaaaatttattat
i caeJap4.Scaffold54    C 0 I 13
e caePb3.Scfld02_254      169566 292 +   193288 I

a score=36454.000000
s ce10.chrX               612320 74 + 17718866 ATATAGAGTAT--TAGTTGTCAACATATATTCTCACGCTCTGATGTCTTGCAGTGTGCGTATTCTTCTGAAACAGA
s cb4.chrX              21111561 63 - 21540570 -------------acatagaaaaaattagttctTACGCTCTGATATCTTGAAGTGTACGTATCCGTCTGAAACAGA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   423016 63 -  1162296 -------------ACATTAATAACAGTAATTCTTACGCTCTAATATCTTGCAATGTACGTATCcgtctgaaaaaga
i caeRem4.Crem_Contig24 I 3 I 123
s caeSp111.Scaffold629   3438035 70 - 33334924 ------ACTTCAAATCTTGTTAGATTGCTTTCTTACGCTCTAATATCTTGAAGTGTGCGTATCcgtctgaaaaaca
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_254      169858 74 +   193288 ATATAAATTATTGATGTTATCATTATCATATCTTACGCTCTGATATCTTGAAGTGTACGAATACGTCTGAAAA--A
i caePb3.Scfld02_254    I 292 I 1
s caeJap4.Scaffold54      128979 74 +   258924 ACACAACCTAT--TAGAACATAAAATATTTTCTCACGCTCTGATATCCTGAAGAGCTCGTATTCTTCTGAAAAACA
i caeJap4.Scaffold54    I 13 C 0

a score=1812.000000
s ce10.chrX               612394 3 + 17718866 CAT
s cb4.chrX              21111624 2 - 21540570 -AT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3438106 3 - 33334924 cat
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254      169933 3 +   193288 CAT
i caePb3.Scfld02_254    I 1 I 106
s caeJap4.Scaffold54      129053 3 +   258924 CGT
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   423079 123 -  1162296 I

a score=-782.000000
s ce10.chrX               612397 11 + 17718866 -----CACAATAACAA
s cb4.chrX              21111626  7 - 21540570 -----TATAGGA----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3438109  7 - 33334924 -----cACAACA----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      129056 16 +   258924 ACAAAGACAATAACAA
i caeJap4.Scaffold54    C 0 I 24
e caePb3.Scfld02_254      169936 106 +   193288 I
e caeRem4.Crem_Contig24   423079 123 -  1162296 I

a score=-10616.000000
s ce10.chrX               612408 238 + 17718866 GGACCA---CGACAGAAACCAAGTAATATATTTCACATTTCACAAAATCGCCATTTTACAACAATTATCTGACAAAGTCACACATAGCTTATTTTTCAATTGCTCATTTCGGGTGCAACTCTATTTTGGACAATACGGTAGTTTCAAACATTTAAACAATGTTTCACACAACTATGCGTCTTACAAAAAATTCATAAAATATCACAAATTTGTCGAAAACTTGTTTTTTCAAATAAGCTTG
s cb4.chrX              21111633 122 - 21540570 ----Ca---ggacaaaaac--aaaaacatattgAAAAGT--------------------AACGAATCACCGACTCAGAC-CAAAGA--------TTCGA-----CACATCAAAGGCAa--------------------------caaagattttttcaatatttca---atttttg---ttaacatagag---------------------------------------aaaataa-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3438116  84 - 33334924 ----CATGTGGACAAGGAT--AATTATAT-----------------------------------------GATTCAGATATCCAGA--------TTCAA-----------AAAGACA----------------------------AGACATTGTATCAAAA-------------------TGACAAACAA---------------------------------------Caaataa-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      169936 106 +   193288 I
e caeJap4.Scaffold54      129072  24 +   258924 I
e caeRem4.Crem_Contig24   423079 123 -  1162296 I

a score=-6787.000000
s ce10.chrX               612646 46 + 17718866 ACATTTCTATCAA-TATTCATTTTCGT----CACCGAAAATGTAATGGACC
s cb4.chrX              21111755 14 - 21540570 attctgCCGTCGAA-------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3438200 13 - 33334924 atgtttcaatCAA--------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      129096 47 +   258924 ACACTTTTTTGAA----TAACCTTCGTGAAGcgttcaaaataaaaattcca
i caeJap4.Scaffold54    I 24 C 0
e caePb3.Scfld02_254      169936 106 +   193288 I
e caeRem4.Crem_Contig24   423079 123 -  1162296 I

a score=2231.000000
s ce10.chrX               612692 10 + 17718866 AATATTAGAG
s caeRem4.Crem_Contig24   423202 10 -  1162296 AATATTTGTA
i caeRem4.Crem_Contig24 I 123 C 0
s caeSp111.Scaffold629   3438213  9 - 33334924 -ATATTTGTA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      129143 10 +   258924 aacattTATT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      169936 106 +   193288 I
e cb4.chrX              21111769  0 - 21540570 C

a score=152731.000000
s ce10.chrX               612702 151 + 17718866 CTCACCTGTTGATGCTCTCCAAACTAATCGGGTTGCTGTCTCTCACATGTTTCCCGATGTTTTCGAATCTTTGCTCCCAGAATTTCGGAGTACGGAGTGCCGCGCTCAAGTACGATGTGTTGTTGTTTCTCCAATCGGTATCTGGCTGAAA
s cb4.chrX              21111769 147 - 21540570 ----CCTGTTGATGCTCTCCAAACTGATAGGGTTGCTGTCTCTAACATGTTTTCCAATGTTCTCAAATCTTTGTTCCCAGAATTTTGGGGTACGGAGAGCTGCGCTCAAATATGAAGTTCCATTGTTTCTCCAATCAACATCAggctgaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   423212 151 -  1162296 CTAACCTGTTGATGCTCTCCAAGCTAATCGGATTACTGTCTCTCACGTGCTTTCCGATGTTTTCAAATCGCTGCTCCCAGAATTTTGGAGTTCTGAGAGCTGCACTCAAATACGAAGTTCCGTTGTTTCTCCAATCCACAtccggctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3438222 151 - 33334924 CTTACCTATTGATGCTCTCCAGACTAATTGGATTACTATCTCTCACATGCTTTCCAATGTTTTCGAATCTTTGCTCCCAGAATTTGGGTGTTCGGAGAGCGGCGCTCAGATAGGATGTTCCATTGTTTCTCCAGTCAACGTCcggctgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170042 151 +   193288 CTCACCTGTTGATACTTTCCAAACTGATAGGATTACTGtctcgaacattttttccaatacttTCAAATCTTTGCTCCCAGAATTTTGGTGTACGCAGAGCCGCGCTCAGATAAGACGTTCCATTGTTTCTCCAGTCGGTATCAGGCTGAAA
i caePb3.Scfld02_254    I 106 C 0
s caeJap4.Scaffold54      129153 151 +   258924 CTTACCTGTTAATGCTGTCCAAACTAATTGGATTACTATCTCTCACATGTTTTCCAATATTCTCAAATCTCTgttcccaaaatttcggcGTGCGTAGAGCCGCGCTCAAATAAGACGTTCCATTGTTTCTCCAGTCTGTGTCAGCCTGAAA
i caeJap4.Scaffold54    C 0 I 36

a score=910.000000
s ce10.chrX               612853 1 + 17718866 A
s cb4.chrX              21111916 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   423363 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 I 46
s caeSp111.Scaffold629   3438373 1 - 33334924 a
i caeSp111.Scaffold629  C 0 I 98
s caePb3.Scfld02_254      170193 1 +   193288 A
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      129304 36 +   258924 I

a score=273.000000
s ce10.chrX               612854 1 + 17718866 A
s cb4.chrX              21111917 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254      170194 1 +   193288 A
i caePb3.Scfld02_254    C 0 I 201
e caeJap4.Scaffold54      129304 36 +   258924 I
e caeSp111.Scaffold629   3438374 98 - 33334924 I
e caeRem4.Crem_Contig24   423364 46 -  1162296 I

a score=828.000000
s ce10.chrX               612855 9 + 17718866 AAAACAATT
s cb4.chrX              21111918 9 - 21540570 aaaacaatt
i cb4.chrX              C 0 I 27
e caePb3.Scfld02_254      170195 201 +   193288 I
e caeJap4.Scaffold54      129304 36 +   258924 I
e caeSp111.Scaffold629   3438374 98 - 33334924 I
e caeRem4.Crem_Contig24   423364 46 -  1162296 I

a score=0.000000
s ce10.chrX               612864 566 + 17718866  
e caePb3.Scfld02_254      170195 201 +   193288 I
e caeJap4.Scaffold54      129304  36 +   258924 I
e cb4.chrX              21111927  27 - 21540570 I
e caeSp111.Scaffold629   3438374  98 - 33334924 I
e caeRem4.Crem_Contig24   423364  46 -  1162296 I

a score=194.000000
s ce10.chrX               613430 8 + 17718866 GAAAATG-G
s caeSp111.Scaffold629   3438472 9 - 33334924 gaaaataag
i caeSp111.Scaffold629  I 98 C 0
e caePb3.Scfld02_254      170195 201 +   193288 I
e caeJap4.Scaffold54      129304 36 +   258924 I
e cb4.chrX              21111927 27 - 21540570 I
e caeRem4.Crem_Contig24   423364 46 -  1162296 I

a score=848.000000
s ce10.chrX               613438 4 + 17718866 AAAA
s caeSp111.Scaffold629   3438481 4 - 33334924 aaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170396 4 +   193288 AGAA
i caePb3.Scfld02_254    I 201 C 0
e caeJap4.Scaffold54      129304 36 +   258924 I
e cb4.chrX              21111927 27 - 21540570 I
e caeRem4.Crem_Contig24   423364 46 -  1162296 I

a score=-265.000000
s ce10.chrX               613442 1 + 17718866 A
s caeSp111.Scaffold629   3438485 1 - 33334924 c
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170400 1 +   193288 C
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      129340 1 +   258924 A
i caeJap4.Scaffold54    I 36 C 0
e cb4.chrX              21111927 27 - 21540570 I
e caeRem4.Crem_Contig24   423364 46 -  1162296 I

a score=54.000000
s ce10.chrX               613443 1 + 17718866 T
s caeRem4.Crem_Contig24   423410 1 -  1162296 T
i caeRem4.Crem_Contig24 I 46 C 0
s caeSp111.Scaffold629   3438486 1 - 33334924 t
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170401 1 +   193288 A
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      129341 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21111927 27 - 21540570 I

a score=81163.000000
s ce10.chrX               613444 90 + 17718866 TACCCTTGTGAACATGTGTCCGGATAGTGGTGCGGTTCCTTTTCCAGTTGATTCACTGATCAATTTATTCTCCCATTCTTGTGGCCTAAA
s cb4.chrX              21111954 90 - 21540570 TACCTTTGTGAACATGTGTCCGGAAAGTGGTGCAGTACCTTTCGAAGCAGATTCAGAAATCAGTTTGTTCTCCCATTCTTGcggtctgaa
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig24   423411 90 -  1162296 CACTCTGGTGAACATGTGTCCAGAAAGTGGAGCAGTTCCCTTAGAAGAAGATTCACTTATAAGTTTATTCTCCCATTCTTGTGgtctaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3438487 90 - 33334924 cactttagTGAACATATGTCCGGAAAGAGGGGCGGTTCCCTTAGAAGCCGACTCACTGATCAATTTGTTCTCCCATTCTTGCGgtctgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170402 90 +   193288 TACCTTGGTGAACATGTGTCCGGATAGAGGAGTTGTTCCTTTCAATGCTGATTCGTTTATCAGTTTGTTCTCCCATTCCTGAGGTCTGAA
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      129342 90 +   258924 GACCTTGGCAAACATATGTCCAGAAAGTGGAGTAGCGCCTTTAGAATTCGATTCACTAATCAATTTGTTCTCCCATTCCTGTggccttaa
i caeJap4.Scaffold54    C 0 I 45

a score=90.000000
s ce10.chrX               613534 1 + 17718866 A
s cb4.chrX              21112044 1 - 21540570 a
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig24   423501 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3438577 1 - 33334924 c
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170492 1 +   193288 A
i caePb3.Scfld02_254    C 0 I 35
e caeJap4.Scaffold54      129432 45 +   258924 I

a score=-5199.000000
s ce10.chrX               613535 211 + 17718866 ATGTTGATGATTTCATACGCAAACAAAAAAAAGTTGCATCGAGAAATTTGAACTTCCTGGAACATGCGAAATTTTTCCGAAAAGTTTTTTGTAAGAAAAGCAGTCTATTGTGTTTTATTTATTTTTCTGATATTCCGTGTTTTCCCGATTTTAACAATTTTTCAAACAATAAAATTTTGGAGAAGGTTTCGCGTGATCTGATACTTCATAT
s caeSp111.Scaffold629   3438578  28 - 33334924 at---------------------------------------------------------------------tttttctgaa----------------------------------------------------------------------taaaaactgTTGAATC--------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      170493  35 +   193288 I
e caeJap4.Scaffold54      129432  45 +   258924 I
e cb4.chrX              21112045  27 - 21540570 I
e caeRem4.Crem_Contig24   423502   1 -  1162296 I

a score=-1559.000000
s ce10.chrX               613746 25 + 17718866 AAAAATAAAGAACATAGTTCCTAGA--
s caeRem4.Crem_Contig24   423503 25 -  1162296 aaaaattaaaa--agagtttttcaacA
i caeRem4.Crem_Contig24 I 1 I 6
s caeSp111.Scaffold629   3438606  7 - 33334924 ------------------CCCCCGA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      170493 35 +   193288 I
e caeJap4.Scaffold54      129432 45 +   258924 I
e cb4.chrX              21112045 27 - 21540570 I

a score=-1648.000000
s ce10.chrX               613771 8 + 17718866 AAATACTA
s cb4.chrX              21112072 8 - 21540570 AAACTCTC
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig24   423534 5 -  1162296 AA---CTA
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold629   3438613 5 - 33334924 --AACCT-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      170493 35 +   193288 I
e caeJap4.Scaffold54      129432 45 +   258924 I

a score=218684.000000
s ce10.chrX               613779 295 + 17718866 ACTTTCTTGGAATATATCTTCCTTCTGGTCTCTTGAACATGTCCACGGAGTGCTGCAAGTCAAAGTCAAAATAGTCTGGATCATCTCGATTTGGACGGGAGTAATATGGTCGGGCAGTTGTGTAGTGCTGAAAAATACGT----ATTCAGATAAGGAAACGTTG-GAAACG------ATAACCCACAGAAAAGTCATAGTCGTCCTGCTCAGAGAAGCTTCCTGCAGATGGCTCTGGAGCTCGGCGGAATTCTCGTGTCGTAATGCTCTTGTAGCGTTCAGGAAGGGGAGCGTTTTTCAAAAGCCT
s cb4.chrX              21112080 293 - 21540570 ACCTTCTTGGCGTGTATTTTCCTTCTGGACGTTTAAACATATCAACAGAATGTTGGagatcaaaatcaaaatagtCTGGATCATCTCGATTTGGACGAGAGTAATAAGGACGAGCGGTTGTGTAATGCTTAAataag-------gtttt-----gaaaattttg-aatgcaGATCTAATGACATACCGAAAAATCATAGTCATCTTTCTCTGAATAGCTTCCGGCAGACGGGTCTGGGGCCTTTCGGAACTCACGAGTTGTGATAGTTTTATAGCGTTCCGGTAGTGATGCTGTTTTAAGAagcct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   423539 295 -  1162296 ACTTTCTTGGTGTATACTTTCCTTCTGGGCGTTTGAACATATCAACCGAATGTTGCaagtcaaaatcaaaatagtCTGGGTCATCACGATTTGGTCGGGAGTAGTATGGACGAGCAGTAGTGTAGTgctaaaatttc-------attttttatcgaaagTCCGT-TCTACAAAC---ATAACTtacagaaaaatcataatCATCCTTTTCCGAATAACTGCCAGCAGATGGTTCCGGAGCCTTACGGAATTCGCGGGTGGTGATGGTCTTGTAACGTTCTGGGAGTGGAGCAGTTTTCAAGAGCCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3438618 297 - 33334924 ACCTCCTTGGAGTGTATTTTCCCTCCGGACGCTTAAACATATCCACCGAGTGTTGcaaatcaaaatcaaaataatctGGATCATCACGGTTTGGACGAGAGTAGTATGGTCGAGCAGTTGTGTAATGCTAAAGTATTTGGAA-AATGTTGTatagtttgtttttcaatacaa--------AAGTACCGAGAAATCATAGTCatctttttccgaaaaacttCCTGCTGATGGTTCCGGAGCTTTACGGAATTCGCGGGTGGTAATTGTTTTGTATCTTTCTGGGAGGGGTGCAGATTTTAGAAGCCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      170528 294 +   193288 ACCTTCTTGGTGTGTATTTTCCTTCCGGCCGTTTGAACATGTCTACAGAGTGTTGcaaatcaaaatcaaagtaATCCGGGTCATCACGATTTGGGCGAGAGTAGTATGAACGAGCAGTGGTGTAATGCTTAAAAATT-------GTAATGTTTAGACTGTTTCT-AGCAGAAA----ATGAATTACCGAAAAATCGTAGTCATCTTTCTCTGAATAATTCTCGGAAGACGGCTCTGGAGCTTTACGGAATTCGCGAGTAGTGATAGTTTTGTAACGCTCTGGAAGTGGTGCAGTTTTGAGGAGCCT
i caePb3.Scfld02_254    I 35 C 0
s caeJap4.Scaffold54      129477 300 +   258924 ACCTTCTTGGTGTGTATTTTCCTTCAGGACGCTTAAACAAGTCAACAGAGTGCTGCAAATCAAAATCGAAATAATCTGGATCATCGCGATTTGGTCTGGAATAGTATGGACGAGCCGTAGTGTagtgctgaaaattttaaaattgaattccaaaataaattctc-aaccaaa-----caaaccaaccgaaaaatCATAATCATCTTTCTCGGATAAACTACCAGCAGATGGCTCTGGAGCTTTGCGAAATTCTCTGGTTGTAATGGTTTTATACCGTTCCGGAAGAGGAGCAGATTTCAGTAACCT
i caeJap4.Scaffold54    I 45 I 51

a score=3140.000000
s ce10.chrX               614074 5 + 17718866 AGAAA
s cb4.chrX              21112373 5 - 21540570 aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   423834 5 -  1162296 GGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3438915 5 - 33334924 GGAAA
i caeSp111.Scaffold629  C 0 I 31
s caePb3.Scfld02_254      170822 5 +   193288 GAAAA
i caePb3.Scfld02_254    C 0 I 2
e caeJap4.Scaffold54      129777 51 +   258924 I

a score=-5110.000000
s ce10.chrX               614079 29 + 17718866 GTGAGAAG------TTGTTGTTTGGAAAACTGAAT-----
s cb4.chrX              21112378 34 - 21540570 ttcagaaa------tagtTTTACAGTTTGCAAGATTGAAT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   423839 40 -  1162296 ATTATaagaataattgattttttgatgaactCAGATAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      170829 27 +   193288 -CCAGGTA----ATTAACTTCAGAG---GCTCGAT-----
i caePb3.Scfld02_254    I 2 C 0
e caeJap4.Scaffold54      129777 51 +   258924 I
e caeSp111.Scaffold629   3438920 31 - 33334924 I

a score=-6849.000000
s ce10.chrX               614108 115 + 17718866 ATTAAAAAATTAGAAAGAATTAAGAAAAAAAAACATTTAGCATTACTGCAGGTTTCAACCAAAATGTATA------------------AACAAAAGTGTAAAAATTACTTTATAA--------TTAcacgtcgtgacagaa
s caeRem4.Crem_Contig24   423879 134 -  1162296 ACTTGGTCATTATCAAGCCTTTaatttgacaattttgt----tttttgaaagtttaataTAGAAAAGTTGAGGCCAGAAACGAATCTCAACAGACAcacaagaat---ttcagaaaatcagaatcaaaaaaCCTGTCAGAA
i caeRem4.Crem_Contig24 C 0 I 175
s caePb3.Scfld02_254      170856  78 +   193288 --CTg-------------ctcgaaaaaaacaatatttt----ccatAAGAGATTCAAT---GATCgattg--------------------------------------ttcaaaaaagctttGCTAAAGG---Cgtgaaaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      129777  51 +   258924 I
e cb4.chrX              21112412   2 - 21540570 I
e caeSp111.Scaffold629   3438920  31 - 33334924 I

a score=-936.000000
s ce10.chrX               614223 157 + 17718866 cgtcccatatcggtttgattttcgaaaaatgcggaaattgaggcgcagacatctctaccgattttgcatggt-taagagcgtgctgacgtctcatttttctggggaaaaattcccgtatttttgtagatcaaaccgtgaagggacagcctgacaccac
s caePb3.Scfld02_254      170934 111 +   193288 ----------cggt--------caaaaaaggaagatag-AAAGAACGAAGTTCTCTACCACTTTTGAATCCCACAACAgtata-----atttaatttttctgccAGATAAGT------TTTATAACAATCAA---------GGACGGTTT--------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      129777  51 +   258924 I
e cb4.chrX              21112412   2 - 21540570 I
e caeSp111.Scaffold629   3438920  31 - 33334924 I
e caeRem4.Crem_Contig24   424013 175 -  1162296 I

a score=-8088.000000
s ce10.chrX               614380 163 + 17718866 gtgTAATGACCAATTCAAC----------------AAAAATTTGAAATTTTTTTCCACAGTTACTTTAATTAAACTTCCCCAAATTTTTATCGAAGTGATTTGTAATAGTTTTTTTTGATTTATCAACAAAATGTTTTTAACTCAACAATAATCTTTTCTCAAAAACCCCCCTTTGAAG-
s caeRem4.Crem_Contig24   424188 145 -  1162296 gtttgatgAACATGTCAGCGTGtcattcaaaatgaacaacGTTGCACATTTCCTCAGAGGTTATT------------CTCCAGA--------AAAGTCATTTGTTACACGTTACACGTGTTTCTCTACA-----TTCTATCATTGTGAATAATCCCTTTAcacaa---------taaaa-
i caeRem4.Crem_Contig24 I 175 I 3
s caePb3.Scfld02_254      171045  52 +   193288 ---------------------------------------------ACTTCTTTgttaatgttttt----------------------------gatttttttgtt--------------tttttcccca-----TTCT------------------------------------TAAAAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      129777  51 +   258924 I
e cb4.chrX              21112412   2 - 21540570 I
e caeSp111.Scaffold629   3438920  31 - 33334924 I

a score=0.000000
s ce10.chrX               614543 5 + 17718866 TTTAC
e caePb3.Scfld02_254      171097 0 +   193288 C
e caeJap4.Scaffold54      129777 51 +   258924 I
e cb4.chrX              21112412 2 - 21540570 I
e caeSp111.Scaffold629   3438920 31 - 33334924 I
e caeRem4.Crem_Contig24   424333 3 -  1162296 I

a score=258.000000
s ce10.chrX               614548 4 + 17718866 TAAA
s cb4.chrX              21112414 4 - 21540570 TATT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   424336 4 -  1162296 aaaa
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3438951 4 - 33334924 TAAA
i caeSp111.Scaffold629  I 31 C 0
e caePb3.Scfld02_254      171097 0 +   193288 C
e caeJap4.Scaffold54      129777 51 +   258924 I

a score=103371.000000
s ce10.chrX               614552 101 + 17718866 TCTTACATCAATTCCACATTATTGGCTCTTTCCTCGTATCTTGACTCGATTCCTTGAGAAATAGTGAGTGCAGGCGCTGCATATGGACCAGAACCAGCTGT
s cb4.chrX              21112418 101 - 21540570 CTTTACATTAGCTCGACATTGTTTGCTCTTTCCTCATATCTCGATTCGATTCCTTGAGAAATGCTCAGAGCTGGCGCTGCATATGGTCCAGATCCAGCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   424340 101 -  1162296 tcttacATCAATTCAATGTTGTTTGCTCTATCCTCGTATCTTGATTCGATTCCTTGAGAAATGCTGAGTGCCGGCGCTGCATATGGTCCAGACCCAGCTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3438955 101 - 33334924 ACGTACATCAATTCAACATTATTGGCTCTTTCCTCATATCTCGACTCAATTCCTTGAGAATAGCTAAGCGCCGGCGCTGCATATGGTCCAGATCCAGCTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      171097 101 +   193288 TCTTACATCAACTCCACATTGTTAGCTCTCTCTTCATATCTCGATTCAATGCCCTGAGAAATTCCAAGTGCTGGTGCTGCATATGGTCCAGATCCAGCTGT
i caePb3.Scfld02_254    C 0 I 246
s caeJap4.Scaffold54      129828 101 +   258924 TCTTACATCAATTCCACATTATTCGCTCTTTCCTCGTATCTTGATTCAATGCCTTGAGAAATGCTAGTTGTTGGGGCTGCGTATGGGCCAGAACCAGctgt
i caeJap4.Scaffold54    I 51 C 0

a score=-3563.000000
s ce10.chrX               614653 45 + 17718866 TAT---ACATAAATCAGTTAATCACATGTCGTAAATGTATATTT---TACC
s cb4.chrX              21112519 38 - 21540570 TTGCAAGAATAAAGTATTAAATAA------ACAGATGAAAATGC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   424441 38 -  1162296 TTG---GCATAAATCAGTTAATTACTTCTCATAAATGTAAA----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3439056 34 - 33334924 TTC---ACATAAATAAGTtaatcacttcttctttttt--------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      129929 48 +   258924 ttt---agaaaaaaaaattaattttttttcttatgtgTGTTCATTTTTACC
i caeJap4.Scaffold54    C 0 I 101
e caePb3.Scfld02_254      171198 246 +   193288 I

a score=0.000000
s ce10.chrX               614698 16 + 17718866 CCTTGCAACCCACAAG
e caePb3.Scfld02_254      171198 246 +   193288 I
e caeJap4.Scaffold54      129977 101 +   258924 I
e cb4.chrX              21112557  0 - 21540570 C
e caeSp111.Scaffold629   3439090  0 - 33334924 C
e caeRem4.Crem_Contig24   424479  0 -  1162296 C

a score=37559.000000
s ce10.chrX               614714 101 + 17718866 ACAAACCCTTACCATTAAACATATTGGTGGTGGAAGACGATGTAGCCAGCCGCGAACGATCAGACAGCGATGGCCCCATTATACTGCTCCTTGATCTGAAA--
s cb4.chrX              21112557  97 - 21540570 ---CGAATTTACCGTTGAACATGTTTGAATATGACGAAGAAGTTGCCAAACGAGAGCGATCAGCTAATGATGGACCCATCACACTGCTACGGGATCT---AAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   424479 100 -  1162296 ---AAATCTCACCATTAAACATGTTGGAGTAGGAAGAAGATGTGGCGAGACGAGAACGATCAGCTAACGATGGTGACATCACACTGGTTCGAGATCTGTGAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3439090  97 - 33334924 ----actcTTACCATTAAACATGTTGGAAATGGAGGAAGATGTGGCAAGACGAGAGCGGTCGGATAGTGATGGAGTCATCACGCTGCTTCGAGATCTGAAA--
i caeSp111.Scaffold629  C 0 I 107
s caePb3.Scfld02_254      171444  98 +   193288 ATAAGTACTTAccattgaaaatattcgaa---taaGAAGATGTGGCCAAGCGAGATCTGTCTGATAAAGATGGAGCCATAGAACTGTTTCTTGATCTGTAA--
i caePb3.Scfld02_254    I 246 I 168
e caeJap4.Scaffold54      129977 101 +   258924 I

a score=-493.000000
s ce10.chrX               614815 49 + 17718866 AACAAGA--GTTTTGGAATCGTGATAGTTTCAAAAATCTGTTAGAAGTAGG
s cb4.chrX              21112654 35 - 21540570 AAAAGAAATGGTAtgaa---------------aaaatc-gtgaaaaGAAGG
i cb4.chrX              C 0 I 283
s caeRem4.Crem_Contig24   424579 48 -  1162296 AATGGGG--TGTACGAATGTGGGGCAGTTACGAAAGAC-GAGTGAACTAGg
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      171542 168 +   193288 I
e caeJap4.Scaffold54      129977 101 +   258924 I
e caeSp111.Scaffold629   3439187 107 - 33334924 I

a score=160.000000
s ce10.chrX               614864 3 + 17718866 GGT
s caeRem4.Crem_Contig24   424627 3 -  1162296 gat
i caeRem4.Crem_Contig24 C 0 I 71
e caePb3.Scfld02_254      171542 168 +   193288 I
e caeJap4.Scaffold54      129977 101 +   258924 I
e cb4.chrX              21112689 283 - 21540570 I
e caeSp111.Scaffold629   3439187 107 - 33334924 I

a score=0.000000
s ce10.chrX               614867 2076 + 17718866  
e caePb3.Scfld02_254      171542  168 +   193288 I
e caeJap4.Scaffold54      129977  101 +   258924 I
e cb4.chrX              21112689  283 - 21540570 I
e caeSp111.Scaffold629   3439187  107 - 33334924 I
e caeRem4.Crem_Contig24   424630   71 -  1162296 I

a score=127.000000
s ce10.chrX               616943 6 + 17718866 ATTTTT
s cb4.chrX              21112972 6 - 21540570 ATattg
i cb4.chrX              I 283 C 0
e caePb3.Scfld02_254      171542 168 +   193288 I
e caeJap4.Scaffold54      129977 101 +   258924 I
e caeSp111.Scaffold629   3439187 107 - 33334924 I
e caeRem4.Crem_Contig24   424630 71 -  1162296 I

a score=-1269.000000
s ce10.chrX               616949 30 + 17718866 ---------CTTTGTGTTAAATATTATTTTTCAT-AAATT
s cb4.chrX              21112978 34 - 21540570 ttttgtgtttttttaatAAAGAAGTATGGTTTTT------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3439294 26 - 33334924 ---------ctttgaactgaaaaatttctttccTT-----
i caeSp111.Scaffold629  I 107 C 0
e caePb3.Scfld02_254      171542 168 +   193288 I
e caeJap4.Scaffold54      129977 101 +   258924 I
e caeRem4.Crem_Contig24   424630 71 -  1162296 I

a score=91.000000
s ce10.chrX               616979 1 + 17718866 T
s caeJap4.Scaffold54      130078 1 +   258924 T
i caeJap4.Scaffold54    I 101 C 0
e caePb3.Scfld02_254      171542 168 +   193288 I
e cb4.chrX              21113012 0 - 21540570 C
e caeSp111.Scaffold629   3439320 0 - 33334924 C
e caeRem4.Crem_Contig24   424630 71 -  1162296 I

a score=173614.000000
s ce10.chrX               616980 324 + 17718866 ACCTGACAGACGGAATAAATCCAGTGTCCAATGAGAGGTTTCTATAAGGACTTTCTCCACGAATTGGACGGGCTCTTCCTAGCATCATATTATCCATGAACTCATTATCTTCTCGCTTCTTCTCCGCGCTCACTTTGACCT-GAAA----------------------------------TT-----------------------------------TGAAAACTGGAGATACTTGCC---AGGCCTCGGG---------------------------GTGAAA----ATATTT--CTACCTTGTGATAAGAGTCTTTAATGTTTTCCTGCCACGACTTCCATGCCGGCTTGTTTGGATTTAGATCCTCAAGTCTGTCATCAAAGTCGATTCTTTTGAACCTGGGAGTTTTCACACTAGCGAGCCTGGaa
s cb4.chrX              21113012 373 - 21540570 ACCGGACTGATGGAATGAATCCTGTTTCCATAGACAAGTTTCTGTATGGACTCTCTCCACGAATTGGACGTGGTCGTCCCAGCATCATGTTCTCCATGAATTCATTTTCTTCGCGTTTTTTCTCAGCACTCACTTTTGCCTGAAAACATAAATGTCACAGAA------------------TTAGAGTAACAGTAAAcgt------------------agaaaaattcaaattttcctc------tATCAATCTT-------------CATAATGTATCATCGAATTGTTAGAAT--TCACCTTGTTGTAAGAATCTTTGATGTTTTCTTGCCATGATTTCCATGCCGGCTTGTTTGGATTCAAATCTTCAAGTCTGTCATCAAAGTCTATTCTCTTGAACTTTGGAGTTCTGACTTTCGCAAGTCTGAAA
i cb4.chrX              C 0 I 92
s caeRem4.Crem_Contig24   424701 392 -  1162296 ACCTGACAGACGGAATGAATCCTGtgtcatttgacaagtttcTGTATGGACTTTCTCCACGAATCGTGCGTGGTCTTCCAAGCATCATATTATCCATGAATTCGTTCTCCTCTCGCTTTTTCTCAGCGCTCACTTTGACCT-AAAACATCaattgaatataaat-----------ttttgttaaaaaaagaatatagatttttgtta----------aaaaaaattaaaatttttgaa---gagtctcatcctt-------------ttttctgtttcgttcATTGGGAAAAACAAGTACCCTGTTGTATGAATCCTTGATATTTTCTTGCCATGACTTCCATGCTGGCTTATTTGGATTCAAATCCTCTAGTCTGTCATCGAAGTCGATTCTTCTGAACCTTGGTGTTTTGACGTGCGCCAATctgtaa
i caeRem4.Crem_Contig24 I 71 C 0
s caeSp111.Scaffold629   3439320 387 - 33334924 ACCTAACAGACGGAATGAAGCCTGTTTCCATTGATAAATTTCTATATGGACTCTCTCCTCTAATTGGACGCGGTCTTCCGAGCATCATGTTCTccatgaattcattttcttctcgtttcttctCCGCACTCACTTTGGCCT-GGATAAAAAACAGTTGAGAACTTCAAAACatgctttttttaaaattgcaattcattttttcact-----------tgaTAACCGGAATGCTCTCCCGACGAGTCTGAGT-------------------------TCATGAAA----AGGACC--AAACCTTATTATAAgagtttttgatattctctTGCCATGATTTCCATGCTGGTTTATTTGGGTTTATATCTTCTAGTCTGTCATCGAAATCGATTCTCTTGAATCTTGGTGTTTTGACGTGTGCAagtctgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      171710 313 +   193288 acCTCACAGATGGTATGAATCCAGTTTCCATGGAGAGATTTCTGAATGGGCTTTCACTTCGCTTCACTCGTGGTCTTGCGAGCAACATGTTCTCCataaactcattttcttctcgttttttctcggCGCTAATTTTTGCCT-GAAT------CATTCGAAAACT-----------------------------------------------------------ATGGATGGCTATACC--------------------------------------TCAT-----------ATC--TTACCTTATTATAGGAGTCTTTTATGTTTTCTTGCCAAGATTTCCATGCCGGTTTATCAGGGTTAATGTCTTCAAATCTGTCATCAAAGTCAACCCTGTcgaattttggagttttcaggTGTGctagtctgaaa
i caePb3.Scfld02_254    I 168 C 0
s caeJap4.Scaffold54      130079 407 +   258924 ACCTAACAGATGGAATGAATCCGGTGCTAGAAGACAGGCTAACAAATGGACTTTTGCTTCGAATTGGACGCGAGCGACCCAGCATCATGTTTTCCATGAATTCGGCTTcctcctttttattttcagcgcttATTTTGGCCT-GCAA---------------GTTGttatttgttgttattttggGTTCGTG----ACGTAGTGACTGGTTGTGCGTCAGCAAAATGGAAAACATCGCG-GCGAGACCgggcgattgctgacgcataacttgacacgctgtctcgttTTAAGATC--AAACCTTATTATAAGAATCCTTGATATTTTCCTGCCACGACTTCCACGCTGGCTTTTTCGGGTTAATATCCTCAAATCGATCATCAAAGTCAATTCTGCTGAACCGTGGAGTTTTTCCATTTGGAAGCCTAAAA
i caeJap4.Scaffold54    C 0 C 0

a score=-1115.000000
s ce10.chrX               617304 3 + 17718866 tat
s caeRem4.Crem_Contig24   425093 2 -  1162296 -ca
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3439707 3 - 33334924 tca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      172023 3 +   193288 aat
i caePb3.Scfld02_254    C 0 I 386
s caeJap4.Scaffold54      130486 3 +   258924 AAT
i caeJap4.Scaffold54    C 0 I 4
e cb4.chrX              21113385 92 - 21540570 I

a score=-15.000000
s ce10.chrX               617307 3 + 17718866 -ttt
s caeRem4.Crem_Contig24   425096 3 -  1162296 -ttt
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3439710 3 - 33334924 -ttt
i caeSp111.Scaffold629  C 0 I 113
s caeJap4.Scaffold54      130493 3 +   258924 gtt-
i caeJap4.Scaffold54    I 4 C 0
e caePb3.Scfld02_254      172026 386 +   193288 I
e cb4.chrX              21113385 92 - 21540570 I

a score=1025.000000
s ce10.chrX               617310 16 + 17718866 aaatttataaaatttt
s caeRem4.Crem_Contig24   425099 13 -  1162296 ---tttctttaatttt
i caeRem4.Crem_Contig24 C 0 I 76
s caeJap4.Scaffold54      130496 13 +   258924 gaattttt---atttt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      172026 386 +   193288 I
e cb4.chrX              21113385 92 - 21540570 I
e caeSp111.Scaffold629   3439713 113 - 33334924 I

a score=206.000000
s ce10.chrX               617326 22 + 17718866 aCA------AAACATATTTTAGATTTTT
s caeJap4.Scaffold54      130509 28 +   258924 ccagtgGTTACAAGTACTTCAAATTTCT
i caeJap4.Scaffold54    C 0 I 390
e caePb3.Scfld02_254      172026 386 +   193288 I
e cb4.chrX              21113385 92 - 21540570 I
e caeSp111.Scaffold629   3439713 113 - 33334924 I
e caeRem4.Crem_Contig24   425112 76 -  1162296 I

a score=0.000000
s ce10.chrX               617348 395 + 17718866 GGAATCATTATGTGGGTTTTGTATTCGCTAAGTTTTGTTTATATATTCTACCAATTTTTAAAAATTTCAGTTAGTCTTTGAGCTCATCTCTAAATTTTTGCACCATAAAGACTTTTGCTCAATATTTTGAAATGAGCTAAAAGTTTTGCCAATTTACACTATAGTTTGGCAACATTGTTTATCCAAGTTTATCTTAGTTGGTAGTGGTCAGGACTAGGACTTTTTCGTTTTTTTGGTTTGGTATTCTGACATAAATCAGGTACTAGACACCCAGACCCATTTGGGCAATAATCTCACAAATGCCAGTTCACCTCACTTTCAACTCAATTTTCACTTGTAAAATTAGTATTGTACTCAGATTCTTTTTATCATATTATTTTAGACTTCCGTCTTCT
e caePb3.Scfld02_254      172026 386 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I
e cb4.chrX              21113385  92 - 21540570 I
e caeSp111.Scaffold629   3439713 113 - 33334924 I
e caeRem4.Crem_Contig24   425112  76 -  1162296 I

a score=2032.000000
s ce10.chrX               617743 102 + 17718866 TTCCCGGTTTCAAGTACTTATAATCAGTCATCTTCACCACTCTCACTCTCTCACAACCGTTTCGCCGAAAACGC--------GCCACCAAATTGTCGTTTTTTTAAAGCG
s caeRem4.Crem_Contig24   425188 107 -  1162296 TTCTCGCGTTCTATTTTTCGCCTTCAGCcatgtctctctctctcactttctaAC--CCGTTTTGCCGAAAACGTCTTTCGCAGGAAacaatttgac-ttttttcatcgtt
i caeRem4.Crem_Contig24 I 76 C 0
e caePb3.Scfld02_254      172026 386 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I
e cb4.chrX              21113385  92 - 21540570 I
e caeSp111.Scaffold629   3439713 113 - 33334924 I

a score=996.000000
s ce10.chrX               617845 11 + 17718866 TTATGTCGCGC
s cb4.chrX              21113477 11 - 21540570 ttttgttgccg
i cb4.chrX              I 92 C 0
s caeRem4.Crem_Contig24   425295 11 -  1162296 ttttgttGGTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      172026 386 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I
e caeSp111.Scaffold629   3439713 113 - 33334924 I

a score=7905.000000
s ce10.chrX               617856 18 + 17718866 TGGTGTTTGTGATGGCAG
s cb4.chrX              21113488 18 - 21540570 CAGTGTTTGTGAGGACAG
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24   425306 18 -  1162296 TGGTGTTTGTGATGGCAG
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   3439826 18 - 33334924 TGTTGTTTGTGATGGCAG
i caeSp111.Scaffold629  I 113 I 33
e caePb3.Scfld02_254      172026 386 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I

a score=32087.000000
s ce10.chrX               617874 74 + 17718866 -------------------AGAAGCCGCCCGCGCAAAAGTCAACCCTTCGTTTTTT-TTGAGCTAACAGTGTTTACCTACGATGAGTACTTGGA
s cb4.chrX              21113514 79 - 21540570 AG--------AAGAGATCTTGGAACAGCCCACGCAAAAGTCAAC------TATTTC-TCAAGCTAACAGTGTTTGCCTACTATGAGTACTCGGA
i cb4.chrX              I 8 I 467
s caeRem4.Crem_Contig24   425332 82 -  1162296 AGCCGCTGTTGGGAGATCTTGGAGCCGCCCGCgcaaaagtcaat--------tttt-ttgagctAACAGTGTTTACCTACGATAAGTACTC---
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold629   3439877 67 - 33334924 -------------------AGGAGCCGCCTGCgcaaaagtcaat--------ttttcttgagcTTACAGTGTTTACCTACGATAAGTACTTGTG
i caeSp111.Scaffold629  I 33 C 0
s caePb3.Scfld02_254      172412 69 +   193288 -------------------AAGAACCACCCGCGCAAAACTTAAC------TATTTCACCAAACTAACAGTGTTTGTCTACGATAAATACTCGGA
i caePb3.Scfld02_254    I 386 I 414
e caeJap4.Scaffold54      130537 390 +   258924 I

a score=2884.000000
s ce10.chrX               617948 124 + 17718866 AGGAGGGGT-----------------GGGGATCTCCGTGTGACTTTTCC--------TTTGC-----AG----------------ATATT-----------------AGAGGTTTTCGGAGGTATCGAAAAATAGG-----------ATGCACTTCAGTTGGACGGAGAACA-------GAAAAAAGGTCGTACGGTTCAAGAAA
s caeRem4.Crem_Contig24   425414 159 -  1162296 -----gggtcccccccccccacccccccACACTCTCGTGTGACTTTTTT---GCGTATCTGCAGAAGAGAAATCTCTAT------ATGTT-------------TTGTCGAGATTTCGGGAGgtaaagaaaaacgagggaaG------ATGCACTTC------ACAAAAGTTT-------AAATATAATGTGTACGGTtcaaggaa
i caeRem4.Crem_Contig24 C 0 I 415
s caeSp111.Scaffold629   3439944 173 - 33334924 --------------------------TGTCGTCCTCGTGTGACTTTTTTATAGCGTTTCTGC-----AGAAATCTCTATCTCTCCgtgttttctttcactttATTATCGAGATTTCAGTAGGTAAAGAGAAATAAGGGGAGGAAAGAATGCACTTCAG-GGAAGAAACGTTTggagtgagaaaaaaagaagcgcAGTTCAGAAAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      172481 414 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I
e cb4.chrX              21113593 467 - 21540570 I

a score=441.000000
s ce10.chrX               618072 7 + 17718866 CAGTTTT
s caeSp111.Scaffold629   3440117 7 - 33334924 CAGATTT
i caeSp111.Scaffold629  C 0 I 781
e caePb3.Scfld02_254      172481 414 +   193288 I
e caeJap4.Scaffold54      130537 390 +   258924 I
e cb4.chrX              21113593 467 - 21540570 I
e caeRem4.Crem_Contig24   425573 415 -  1162296 I

a score=0.000000
s ce10.chrX               618079 2147 + 17718866  
e caePb3.Scfld02_254      172481  414 +   193288 I
e caeJap4.Scaffold54      130537  390 +   258924 I
e cb4.chrX              21113593  467 - 21540570 I
e caeSp111.Scaffold629   3440124  781 - 33334924 I
e caeRem4.Crem_Contig24   425573  415 -  1162296 I

a score=315.000000
s ce10.chrX               620226 69 + 17718866 GTGGAGGAAAAAACAATC--AAAATATCTTTTATACACGGTATCGTAAACTTTTGAAATATAATGGGAGCT
s caeJap4.Scaffold54      130927 65 +   258924 gtaaacaaaaaaaaagtcggaaaatagCCTT-ACACATTACATGCAACACTCCTCAAA----ATTTGAGc-
i caeJap4.Scaffold54    I 390 C 0
e caePb3.Scfld02_254      172481 414 +   193288 I
e cb4.chrX              21113593 467 - 21540570 I
e caeSp111.Scaffold629   3440124 781 - 33334924 I
e caeRem4.Crem_Contig24   425573 415 -  1162296 I

a score=239.000000
s ce10.chrX               620295 41 + 17718866 ---CACTACTTGAAAGAAAAAAGTTCACTAACCTCTCTGACGTC
s caeRem4.Crem_Contig24   425988 36 -  1162296 ---CACTACTCGTCAACAACAA-----CTCACGTATGAGAAGAA
i caeRem4.Crem_Contig24 I 415 C 0
s caeJap4.Scaffold54      130992 39 +   258924 caatattgcaaaaaaaaaaaaa-----ctcacgcaGGTGGTAAA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      172481 414 +   193288 I
e cb4.chrX              21113593 467 - 21540570 I
e caeSp111.Scaffold629   3440124 781 - 33334924 I

a score=86110.000000
s ce10.chrX               620336 137 + 17718866 AGCCCGTAATCTGGACTTGGGCACGTTCTATCCAACAAATCTACGGCAACTGGAGCAACATTTGGGCTCAAAGAAGATTTGAGGTTGAGCAGAGATAACCCCTCTTCTATTAATGCTGATGAGGTTCCGGAAATTTT
s cb4.chrX              21114060 137 - 21540570 AGTCCGAAATCAGGACTTGGAGTAGCACGTTCCAATAAATCCGGACTGACTGGTCGAACGTTTGGACTCAGCGAGGATTTCAAGTTTAACAAGGACAATCCTTCTTCGATCAAGGCTGATGACGTGCCagacatttt
i cb4.chrX              I 467 C 0
s caeRem4.Crem_Contig24   426024 137 -  1162296 AGTCCAAAATCGGGACTCGGTGTTGCTCTTTCCAGTAAATCTGGGCTCACTGGTCTGACATTTGGGCTCAATGAAGATTTCAGGTTCAGTAGAGACAATCCTTCTTCGATCAGCGCTGATGAAGTgccggacatttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3440905 137 - 33334924 AGTCCGTAATCAGGACTCGGCGTGAGGCGTTCTAGCAAGTCTGGACTGACTGGTCTGACGTTTGGGTTTAGAGAAGATGACATGTTAAGGAGAGACAAGCCTTCTTCAATGAGAGCTGATGAAGTCCCGGACATCTT
i caeSp111.Scaffold629  I 781 C 0
s caePb3.Scfld02_254      172895 134 +   193288 AGTGCGTACTCCGGA---GTTCTGGCTCGTTCCAATAAATCAGGGCTCACTGGTCGAACATTTGGATTCAATGAAGATTTCATGTTGAGAAGAGACAGTCCCTCTTCGATCAACTCTGCTGATGGAAcggacatttt
i caePb3.Scfld02_254    I 414 C 0
s caeJap4.Scaffold54      131031 134 +   258924 TATCTGTGATCAGAAATCGA---GGACTTCTCCACCAAAACTGGACTCAAAGGACGAACATTTGGGCTCGAGGACGACTTCAGATTGAGAAGCGAGAGCCCTTCCTCGATCAACGATGAAGAAAGTCCggacatttt
i caeJap4.Scaffold54    C 0 I 81

a score=4007.000000
s ce10.chrX               620473 5 + 17718866 CTGGA
s cb4.chrX              21114197 5 - 21540570 ctgaa
i cb4.chrX              C 0 I 250
s caeRem4.Crem_Contig24   426161 5 -  1162296 ctgaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441042 5 - 33334924 CTGGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173029 5 +   193288 ctgaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131165 81 +   258924 I

a score=236.000000
s ce10.chrX               620478 2 + 17718866 AA
s caeRem4.Crem_Contig24   426166 2 -  1162296 at
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441047 2 - 33334924 AT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173034 2 +   193288 aa
i caePb3.Scfld02_254    C 0 I 126
e caeJap4.Scaffold54      131165 81 +   258924 I
e cb4.chrX              21114202 250 - 21540570 I

a score=-744.000000
s ce10.chrX               620480 5 + 17718866 ATGGA-
s caeRem4.Crem_Contig24   426168 5 -  1162296 cttga-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441049 5 - 33334924 -AGGAA
i caeSp111.Scaffold629  C 0 I 53
e caePb3.Scfld02_254      173036 126 +   193288 I
e caeJap4.Scaffold54      131165 81 +   258924 I
e cb4.chrX              21114202 250 - 21540570 I

a score=-7195.000000
s ce10.chrX               620485 687 + 17718866  
s caeRem4.Crem_Contig24   426173 438 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      173036 126 +   193288 I
e caeJap4.Scaffold54      131165  81 +   258924 I
e cb4.chrX              21114202 250 - 21540570 I
e caeSp111.Scaffold629   3441054  53 - 33334924 I

a score=-791.000000
s ce10.chrX               621172 2 + 17718866 TT-
s caeRem4.Crem_Contig24   426611 2 -  1162296 -CG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441107 2 - 33334924 TC-
i caeSp111.Scaffold629  I 53 C 0
e caePb3.Scfld02_254      173036 126 +   193288 I
e caeJap4.Scaffold54      131165 81 +   258924 I
e cb4.chrX              21114202 250 - 21540570 I

a score=3728.000000
s ce10.chrX               621174 8 + 17718866 CTTACAGG
s cb4.chrX              21114452 8 - 21540570 CTTACTGG
i cb4.chrX              I 250 C 0
s caeRem4.Crem_Contig24   426613 8 -  1162296 CTTACAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441109 8 - 33334924 CTTACTGG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      173036 126 +   193288 I
e caeJap4.Scaffold54      131165 81 +   258924 I

a score=-478.000000
s ce10.chrX               621182 73 + 17718866 AATCTCATTTTCC-AATCCGCTG---TCTGATCTCACAACTGATCGAACTTTGGGTTT----CTCCGGATCCAGGTTGAG-----A
s cb4.chrX              21114460 67 - 21540570 TATTCCGTTAGCC-AACCCTGCATCGTCTACTTTC------------------GATTTCCCATGGTGTTCTGAGCTCAAACCTATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   426621 52 -  1162296 TGTCCCATTCTCC-AAAACAGTA------GATTTC------------------GGTTT----TGGTGGTTCCGGATCAAA-----A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441117 55 - 33334924 AATACCATTCTCC-AAGTTAGCT---TTTGGTTTT------------------GGTTT----TGGCGGCTCCGGATCTAT-----G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173162 56 +   193288 AACCTTATTTTCCTAAACTCACT---TTTGTGCTT------------------GCCTT----CGGTGGATCTGCATCATA-----A
i caePb3.Scfld02_254    I 126 C 0
e caeJap4.Scaffold54      131165 81 +   258924 I

a score=30120.000000
s ce10.chrX               621255 40 + 17718866 TTCACATCTTCAGTTTCACTCATTATCCAAGTCTTCTG-GA
s cb4.chrX              21114527 40 - 21540570 TTCACATCTTCACTTTCACTCATTATCCAAGTCTTCTG-AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   426673 41 -  1162296 TTCACATCTTCAGTTTCACTCATTATCCAAGTCTACAACaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441172 37 - 33334924 TTCACATCGTCAGTCTCACTCATTATCCAAG---tctg-aa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173218 40 +   193288 TGTGCTTCTGAAGTCTCACTCATTGTCCAattactctg-aa
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      131246 40 +   258924 TTCTCATCATCGTTGTCAATCATTATCCAAGTTTTCTG-AA
i caeJap4.Scaffold54    I 81 I 29

a score=310.000000
s ce10.chrX               621295 8 + 17718866 AAGTAACA
s cb4.chrX              21114567 8 - 21540570 ATGCAACA
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   426714 8 -  1162296 agacgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441209 8 - 33334924 atgaaagt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173258 8 +   193288 aaaaaagt
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131286 29 +   258924 I

a score=-2519.000000
s ce10.chrX               621303 8 + 17718866 GCTCAGGG-
s caeRem4.Crem_Contig24   426722 8 -  1162296 atttagca-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441217 8 - 33334924 -tttcacag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173266 1 +   193288 -t-------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131286 29 +   258924 I
e cb4.chrX              21114575 38 - 21540570 I

a score=7125.000000
s ce10.chrX               621311 135 + 17718866 ---------------------------------------------ATGA--------GTAGA-------AAAAGATGAAAAAGTTGGCA-------------AGAATGTATGAGACAGAAA-------CTTTTCTGTTTGAGA---AATTG----AGTGGTGCTCAGGGGATTTGCTCAC-------CGCCTTTTTGATT-GGAATGTCAATGTCGC-------GCGAGAGTTTCAA
s cb4.chrX              21114613 172 - 21540570 ---ATtgataaaagaagaaaacagagTCACCG--ATTGAAGG---GAGA-------TGTACA-------GATA-----------------------------GATATacagatagaaaaaaagatttttttttctgtttgagaTTGGATAC---GAGTGGTGCTTAGAGAATTTGCTCACTCGGATACCGCTTTTTGATGAAGAATGCCAAAGTCGC----Atgatgaaa-------
i cb4.chrX              I 38 I 100
s caeRem4.Crem_Contig24   426730 218 -  1162296 gtgaaaaacaaaaaatcaaaacgaaggtatcttcatggaaaa---aaaattgagcttgcacaaaacattgataaaacaaaaaacgagtaaaTGGGTTGAAGGGATATACAGATAGAgagaa------ttttttctgtttgagaTTGGGGAT--AGAGTGGTGCTCAGAAGATTTGCTCTCTCGGATACCGCTTTTTGATT-GGAATGTCAATGTCGCGGCGgggttgaaa-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441225 177 - 33334924 -------atga------aaaataacaatattgaaacagaaaaaacgaga--------gtaaatggttgagaaaatacaaaaagtagg---------------g------ggggggAGacga-------tttttctgtttgagaTTGGATGAGTGTGGGGGTGCTCAGAAGATTTGCTCACTCGGATACCGCTTTTTGATT-GGAATGTCAATGC----------GTCAAAGTTTCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173267 168 +   193288 ------------------aagaaacattttttgatttgaaaa---taaa--------gcaCAT-------AAAAAACAAGCACTGGA---------------GTCTTTTGTGGATCgaaaa---------tttctgtttgaaGTTGGATGA----AGTGGTACTCATAGAATTTGCCCACTTGGATTCCGTTTTCCGATT-GAAATGTCAATGTCAG----CAAAAGAAAATCTCTA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131286  29 +   258924 I

a score=-9221.000000
s ce10.chrX               621446 71 + 17718866 GTTTTTTTCGGGATACAGGTAATGTTTTTATAGGGGTATCAGTGTTTT---------------TGGCCCACAATATAAAAAACAAA
s caeRem4.Crem_Contig24   426948 77 -  1162296 --------aaagtttcaag-aaagtaaattagtgaaatttggttttatgaattttaatgAATCTTTTCTAAACTATACCAGGTTAA
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3441402 36 - 33334924 ---------GGG-----AG-AAAATAAGATTAGCGACGTCAGTTTTGG-----------------------------------TAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173435 55 +   193288 ---------TGGTTATTTG-AACATAGTTACAAGGTTTTTAGCTTTGT---TCTTCATAGAT------------------AACTAA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131286 29 +   258924 I
e cb4.chrX              21114785 100 - 21540570 I

a score=-22017.000000
s ce10.chrX               621517 89 + 17718866 AGTATTTCGCAATAGTTGGTTGGAGGCTTTTTCAATTAGAATTTGATGCATGT-----TTTC--AAATATATACATGTAAGT------TTTGAA--G-------------ATTTAGA
s cb4.chrX              21114885 37 - 21540570 ------------------------------------------------AGTGT---TACTCG--ATATG------TCAGAAT------ATTCAA--C-------------ACTTTGA
i cb4.chrX              I 100 C 0
s caeRem4.Crem_Contig24   427028 48 -  1162296 ------------------------------------------------AGTGTAGAGATTTT--GAATG------ACAAGGTTTGGTAAATAAACCC-------------ATTTAGA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3441438 64 - 33334924 --------------GTT-------------ATCGATGAATAATTGAGGAATATTCGGATATT--Gaatat---tctttgaaa------attaaa--t-------------attagag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173490 82 +   193288 --------------GTTTTTTAG-------TTCTACAATTAATCaacgaattttttggtttccggAAAG------TTTGAGC------ACAGAA--TTTTTCATGgcttcattggaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131286 29 +   258924 I

a score=-9740.000000
s ce10.chrX               621606 129 + 17718866 G--------------AAATTAAAC------------------------ATACTTAGCAGAGCaaa----ataa---aaaagttaacaaaatcgaaaaataaatt-----------------------aat-----taaagcaccaacaaa-----------------------aaaaaacaaaaatc-cgaatacaaaagataaaaGAGTGGGGT-GAATGTTGA--GA
s cb4.chrX              21114922 137 - 21540570 A--------------TA---AAACtcagat-----ttttcaaggaaGaaacaatgtaacataaaa----acaatg-gaaatttaaaaaaatacagtaaca---------------------------aag-------------cgaaaag-----------------------gaaaaaaacaattc-cgaATACAATAGATAAAAGAGTAGGAG-GATTGTTGAAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   427076 168 -  1162296 AAAACCAAGAGACATGA---AAACTCAGACCGACATCCATAGTGTAGCCAACATGTGAAACaaaatcgtacaattctaaaaataaaaaagttatctaaaa---------------------------tag-----aagaatcttgaagaa-----------------------aaaaaaaacgattc-cGAATACAAAAGATAAAAGAGTGGGGGAGAATGTTGA--GG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441502 157 - 33334924 a--------------aa---aaac-----------tacTAAAAACCCTTGACTTGGTAGAGTAAa-----------ctgaattgaagaaatttcgaaatatattgcaaaatgataaaaagaaaaaacaag-----gagaaatgtgacctg-----------------------aaaaaaaacaattc-cgAATACAAAAGATAAAAGAGTGGGAG--AATAGTGA--GG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173572 104 +   193288 a--------------aa---aaac------------------------------ggtatATCAAC-----------TGTGGTTGTATTAATGACCAAATA---------------------------AAG-----GACAAAACTGAACCG--------------------------ACAAACAtttc----acacacaaaaaaagagagtgggaG---ATATTGA--GG
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      131315 144 +   258924 ---------------ga---aaac-------------------------aaataaaaatagaaaa-----------tgataatatagaaaaggaagaaaa---------------------------atgttctttaaaaatttgaataaattagCTGTTCCCATCttcttaaaaaaataaaaattctccaatgaaaaggaagaaaaaatagtGG--ATTGTTGA--GG
i caeJap4.Scaffold54    I 29 I 23

a score=5902.000000
s ce10.chrX               621735 21 + 17718866 G-------------GTCTTCCCGTGAATAGAGGA
s cb4.chrX              21115059 34 - 21540570 AGCTCAGAGAGAGATTTTTCCTGTGAATAGAGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   427244 34 -  1162296 ATCTCAACGACAGAGACTTCCCGTGAATAGAGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441659 32 - 33334924 G--GCTCAGAGAGACCCTCCCCGTGGATAGAGCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173676 34 +   193288 GTAAGGAAAAAAGAGCTTTTCCGCGGacagagaa
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      131459 23 +   258924 I

a score=51168.000000
s ce10.chrX               621756 141 + 17718866 GAAAAGTGTGCGTGCTCAGAGAGCCGGGAACGACTGCGCCTCTCTGATCACTGCACTCTCGCCCCCCCCCTCCCGACTACC-TCCCGTCTTCTTGAC-GATCTCAACACAAAACCTGTGTAAAGCCAACGGGCGTATCT------CCTC
s cb4.chrX              21115093 130 - 21540570 -AGAAGTGTGGT-GCTCCGAGAGCCAAGAGTGTCTCAGTCTCTCTGATCGCAGTGATCTCTTGCC--------------TCATCCCGTTTTCTTGGATGCTCTTAAGACGAAACCTGTGTAAAGCCAACGGGCGTATCTCTC---CCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   427278 131 -  1162296 -AAGAGTGTGGT-GCTCCGAGAGCCGAAactgtctgtgtctctctgATCACAGTGATCTCTCAAA--------------TC-TCCCGTCTTCTTGAA-GCTCTCATCACAAAACCTGTGTAAAGCCAACGGGCgtatctctctttcttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441691 117 - 33334924 -AACGGATAGAGCTCCCGAGAACCCGGGAGAATCTGAGTCTCTCCGATATCAACACTCTCAGACG--------------CC-TCCCGTCTTCTTGAA-GCTCTCAACACAAAACCTGTGTAAAGCCAACGGGCG---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173710 126 +   193288 -aacaatttgaa-gcTCGAAGCAACAGAAAATCCTGTGCCTATCTTTCTATTACACTCTCTTATA---------------T-TTCCGTCATCTTGGA-GCTCTCAGCTCAAAACCTGTGTAAAGCCCACGGGCGT-TTTCTC---CCCC
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      131482 112 +   258924 GGAAAGTGTGGT-GCTT-----GCCGAGGATTTCTGTTTCTCCGTGATTGCACTAG-----------------------TA-TTTCTACATCTCGGG-GCTCTCAATACAAAACCTGTGTAAAGCCAACGGGCGTATCTCTC---C---
i caeJap4.Scaffold54    I 23 I 3877

a score=369.000000
s ce10.chrX               621897 28 + 17718866 TCTTTCTCTCTTCCTTGTCCCTCGGCAA
s cb4.chrX              21115223 28 - 21540570 TTTCTCTCGTCTGGATACCCGATGGCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   427409 23 -  1162296 ttttccttggCCAGATACCCGAA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3441808 24 - 33334924 CATCTCTCGGATA----CCCAAAGGCAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      173836 28 +   193288 TCTTTCTTTGCTATTTCTCCTGCGATAA
i caePb3.Scfld02_254    C 0 I 5863
e caeJap4.Scaffold54      131594 3877 +   258924 I

a score=602.000000
s ce10.chrX               621925 3 + 17718866 AAG
s cb4.chrX              21115251 3 - 21540570 AAG
i cb4.chrX              C 0 I 7246
s caeSp111.Scaffold629   3441832 3 - 33334924 GAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e caeRem4.Crem_Contig24   427432 0 -  1162296 C

a score=4230.000000
s ce10.chrX               621928 93 + 17718866 ------AGCACTAGCTGCGATTCGATGATTTTTCTCAAAcccccccccccccccccccccACAAATCGGGCCGGCGTCCTCGTGTTTCAGTTTGTGAAA
s caeRem4.Crem_Contig24   427432 74 -  1162296 GGCGAAAGCACTCG-------TCGGT----------------TTCTCTCCCCTCTCTCCGACCAACC-GATCGACCGCCTcatgtttcagttt-tgaaa
i caeRem4.Crem_Contig24 C 0 I 8402
s caeSp111.Scaffold629   3441835 55 - 33334924 ------AGCAC--------------------------------TCTCCCCACCCTCTCCG----ATC-GACCAACCGCCTCGtgtttcagttt-tgaaa
i caeSp111.Scaffold629  C 0 I 6906
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I

a score=0.000000
s ce10.chrX               622021 4440 + 17718866  
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629   3441890 6906 - 33334924 I
e caeRem4.Crem_Contig24   427506 8402 -  1162296 I

a score=3778.000000
s ce10.chrX               626461 133 + 17718866 AATATTCTGAATTGAAATCTTTGAATTCGAAAATCCAAAGTTTAACAAATTCATTGAAGGGATTAAGTAGTACTTACCTACCTATCAAATT---ACATA--------AATCCTCCCTTCCCCACCAAGTTTATCAATTTTGTTC
s caeRem4.Crem_Contig24   728224 126 +  1162296 AATACTCTAA---------TTCTATTTCGAA----CAAAGTTTAATAAATTCAATGAAGAATAAGAGGAG----AATCTTCCTATCAAATTACCACATAGTAAAAGTAATCCTCCTTTACCT-CCAAGTTTATCAATTGTGCTC
i caeRem4.Crem_Contig24 T 56646 I 1590
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629   3441890 6906 - 33334924 I

a score=0.000000
s ce10.chrX               626594 1457 + 17718866  
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629   3441890 6906 - 33334924 I
e caeRem4.Crem_Contig24   728350 1590 +  1162296 I

a score=15239.000000
s ce10.chrX               628051 202 + 17718866 TTTCATTCA--TAATCCTACCATCAACGACTTATCAATGA---GTCTACCATCTCTGTTCAGAGCTCTACA-----AAAGCTAAGAGCGTTTTCCTC----------CCGCGTGT-TTCTTCCTTCTAATCTACCCTCCTTGATCTGAAACAGAGAGAAG-----GGCGGAGAAGCGAAGGCTTCCTCCT--------GTCCAAAGTATAACTCCGCCCACT-TTCAGCCATTTTTT-
s caeRem4.Crem_Contig24   729940 223 +  1162296 tttcatttt--tcatcctACCATCGACGACTTATCAATGA---GTCT-CCATTTATGGGCGCAACACCACAAAGTCAAGCCTAAGAGCATTTTCTTCACACCCTC--CCGCgcgtgttttgttttctgatct--tcttctgaaacactgagaaaaagaag-----ggcgGAGGAGTCAAGGCTTCCTCTTTCTTTATGCTCAAAAGTGTAACCACGCCCATTATTCCAGCCTTTTTTG
i caeRem4.Crem_Contig24 I 1590 C 0
s caeSp111.Scaffold629  29889011 215 + 33334924 TTTCATTCTGATCCTTCCATCATCAGCGACTTATCAATGAGTTGTCT-ACATTC-------CTATCCCGGAGTATCGAGCCTAAGAGCCTTTCCCCCACCCGCACATACGTGcgtgttttgttttctgatc----cttctgaaacaagaaggaaaaggagaaaaagaagaagaaggc-ggGTTTCCTCT---------CACCAAAGTGTAACTCCGCCCTCTCTTccactgtttttt-
i caeSp111.Scaffold629  n 6906 I 60
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I

a score=237.000000
s ce10.chrX               628253 26 + 17718866 GGCGCTTTCTTATTTTTCCTTTTTCT
s caeRem4.Crem_Contig24   730163 25 +  1162296 TGTGATT-CTCAGTTTTCTCATACCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629  29889226 60 + 33334924 I

a score=0.000000
s ce10.chrX               628279 109 + 17718866 TGTTTTCGTGGATGATTTATTTAATTTTTTGTTCAGAGCTCCGCCTTTCAACCTTTTTTTGCTTACATTTTTAACGTTGAACATGGGAACAATTTTTTCAAAAGCAAAA
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629  29889226  60 + 33334924 I
e caeRem4.Crem_Contig24   730188   0 +  1162296 C

a score=-2027.000000
s ce10.chrX               628388 252 + 17718866 GATGAGGCAAAATTTTTTCAATGCACATTATTCTTTCACTAAAAGAAGTCTTCGAGTAGATTCCAGTTTCACTGATCAAAATCCTCTCACATACTATTACTTTCATGATCGTGTGCCCCTAGTTTAAAAACAATTTCCCCCAGCTTGCTCTCTCTTTTTTTTTTCAAAAAGAACAATGTCTTATGCTCGATCGTATTTCCGTATTTCTATAGAACCCCTCGCTCTTATTCTCGAGGTGTCTCAAAAAGTTTC
s caeRem4.Crem_Contig24   730188 114 +  1162296 GACGAGACAAACttt----gaagc------tccgccccctagA-------TTCGAG--GACTC-----------------ACCCTCCC----------------------------CTCTTCTTGAAGAACAAACTTCCCC----------------------TCCAAGAAAAC----------GTTTGACC-TACTTCC-----------------------------------------CAAAAAACTTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I
e caeSp111.Scaffold629  29889226  60 + 33334924 I

a score=166.000000
s ce10.chrX               628640 13 + 17718866 AAGAGTTTCAAAA
s caeRem4.Crem_Contig24   730302  1 +  1162296 ------------A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29889286 13 + 33334924 aaaagttttgaga
i caeSp111.Scaffold629  I 60 I 1
e caePb3.Scfld02_254      173864 5863 +   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I

a score=-9462.000000
s ce10.chrX               628653 65 + 17718866 ATAGTTTTGACCTTTGAAAAGGGGGAAAATGATTATTTCTCACCTT------TTTTTTGTTTTCTAAGTTG------
s caeRem4.Crem_Contig24   730303 29 +  1162296 ------------------------------------------CTCCGAAAAAATGGTTAggcacttttttg------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29889300 67 + 33334924 acaCTTTGACCTT-----CTCGAAAGGTCTCTCTCCTAAGAACTCC---Aaaatgattatactcttcgtttt--ttg
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254       15742 68 -   193288 atatattcaatttttgaattcggagaTTCTGGCTATTTTCCACTCC---------TTTTTCCGCTGCTTTTTAATTA
i caePb3.Scfld02_254    n 5863 C 0
e caeJap4.Scaffold54      131594 3877 +   258924 I
e cb4.chrX              21115254 7246 - 21540570 I

a score=9663.000000
s ce10.chrX               628718 110 + 17718866 TTTTGTG----------CTTTATTCCGGAAGTGACGACA----TAGGACCTCGCAACCTTCTTCTTTAAAAGGCTACCC---TTTTCTCATCAC-ATTTC------CGGCCCACGAATTTCGTA------T----------------TATGTCGTT
s cb4.chrX                420607 137 + 21540570 ttttttc----------ttttgttgaGGAAGTGACGGCACGaaaaaaaGCTCGTAACCTTCT--CTGAAAAGGGcgccc-atttttttcattacGATTCGGCCTTACATCCCACGAATCTTGTACATTTCCATTATTTCGCATTTCGTAT------
i cb4.chrX              n 7246 C 0
s caeRem4.Crem_Contig24   730332 126 +  1162296 ttttgtt----------ctttATGGAGGAAGTGACGACATACTGAAAAGCTCATAACCTTTT--TTCTTAAGGGTACCC---TTTCTTCATCCC-ATTCCTCCT--CAACCCACGGAATTCGTA------CAATGTACAACATTTCgtat------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29889367 104 + 33334924 ttttgcg----------CTTAGTTCAGGAAGTGACGACA---AAAGGACCTCGTAACC-------TTCTATGGGCACCCCATTTCTCTCATCCC-ATTTC------CGGCCTACGATTTTCGTA------C----------------TATACC---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       15810 111 -   193288 TCATACAATCGTGCTTTCTTGACTAAACGAATGACGGAA---TTAAGTCTTCTT-----------TTAAATGAGTATGACATT--TCCCATCCC-ATTCC------CAGCCCACGATTTTCGTA------C----------------TACGCCCTT
i caePb3.Scfld02_254    C 0 I 928
e caeJap4.Scaffold54      131594 3877 +   258924 I

a score=-35289.000000
s ce10.chrX               628828 325 + 17718866 CA-----------------ATTTCAATTTCCAGCTCAAAGGACCAAGACAAATCCCTTGTAGTATTCTGATT---------------GAATCGAAACGAAACAGAGCAAAAAACAAAATTGTGTTTCTACGATTTCTCACGAGCTCCAG--CTCTCGGCCCCGAGAATACCGAT-----AACCCACGAT-------TATTGTCGTTGACGTTTTTATTTTTGGGGGTTGGCTCAGTCTCTCCTTCTC--TCTCTCTCTGACTTTTCTCTGACTTT---------------------------CTCTTATTCACGATC---------TCAAACTG--------AAATCATTTT-----GTGACGTAG-CACTTTCA-------CAATTTCCACGGACACACACTCCAAAATT---AGAGATTTTAGAA---------ATACAA
s cb4.chrX                420744 349 + 21540570 CGtgaattcaattaaatttttttctgatattcgTTCCAA------AATTTAATCCTTTATCCAATCCAAATTTCAGTATA-------AAAATGAgttaaaatcaagaaaaatgtatttcatattttc----aagcGTCACGTTTTTAGGTCCACCCACCATC----TCTCAACCTCTTGAATTCAAACC-AATGAATATTGTCTTTGACACTCCATT----------------ATTTTGAAGTTGAC------TCTCTGACTTT--TCTGACTTCCTCCGCTCAAAAAGCATTGTGACGTATACCTCGTT--tggttttctcgttttcaatcCG---------------TTTCCACATTGACCCAT-TGCGTTGAACCTGG-CACATCCCGGCCACACC--TTC--AAGCC---TAAAGC---------------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   730458 300 +  1162296 cg-----------------tttttcaatttcagctcaaa----------------tccCTCCGGTCCCGCCTTCTTTGTGTGTATTTAAACCGGGTTTAGATTGAATCAAATACACACTGACAATTC----ATTTCTCACGAGTTGAGAAGAATTCAAGTCC----TTTCTGAC-----AATTCAAAACGGGTTAGAATTGTCGTTGACGTTTTATTTTG-----------CCACTTTGACTTCGAC--TCTTTCTCTGGTTTT--TCTGACATC----------------TAATAAC----------------------------TCAAACCA---------------TTT-----GTGACGTAG-CAGAGTCAA-------AAGTTCCGGTGAAATTTATTC--Acgtt---aaaaattgttgaa----ttgcTGGTAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29889471 335 + 33334924 -------------------CTATTTGATTTAAGCTcgaatgggcggagtcaaccCTCTTCCAAGCTCCGCCTCCCACCTA-------AAAT----TTAAGATTCCAGAA---------------TTC----ATTTCT--TGACTCGGAGTACACACAATTCATGCGTTTCTCAC-----GAGTCGAAAT-------TCCTTTCTTGGAGTCTCGAGTCTGAATTCGT--ATTTATTGTCGACTTGACGTTTTCTTTCTGACTTT----TGACTTT--------------------GACGTTGCTCTCATT--CCAAT---------TCGATCCGGGATTCGACAATATTTTT-----TAGGCTTAGATGTGTTGAGACGGGACAGGTCATCGAATaaccaattt--tcttcttgagaGACTACCGTACCTTTTCCatgacaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       15921 928 -   193288 I
e caeJap4.Scaffold54      131594 3877 +   258924 I

a score=-5407.000000
s ce10.chrX               629153 43 + 17718866 CTCCTAGACTGAACTTTTCTTTTCT----------CTCTAAAACATGTCTTAT
s cb4.chrX                421093 53 + 21540570 TCCAGTGATCATACTTTCCATATTTGCATAGACGCTTCTTAGTTACTTATCCC
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig24   730758 43 +  1162296 TGCTGCGAGActaaaatccattttt----------ttcttcactatGTCCGTT
i caeRem4.Crem_Contig24 C 0 I 19
s caeSp111.Scaffold629  29889806 44 + 33334924 tttttcaagacACCAGACTACTTCTg---------atcttgttttcttctgtc
i caeSp111.Scaffold629  C 0 I 23
s caeJap4.Scaffold54      125972 43 -   258924 CTCCTAGAATGAATACCTGCTGTTT----------CTTTcattcactttttgt
i caeJap4.Scaffold54    n 3877 C 0
e caePb3.Scfld02_254       15921 928 -   193288 I

a score=113300.000000
s ce10.chrX               629196 319 + 17718866 TACATTTC-------------TAACTATTTTAT----------TTTCAGATTCTATTCAAAAATGAATTTGCGATGTATAGTGTCTTTAA-TACTGTTAGCTACCTTTCCAACCTTATCGTCAACTATGACGCTAGTGAGTTTTTTATACA---AATTCC------------AACATAGATATTC----AATTTTAATTCTTTGTT------TCAGAAACGACACTACCGTAGACCCGTGTGCGAGCCCACTCAGTCCTGCTCCTACAGCTACCAACAGTTCACATTCGAGCTCTGTGATTGTCCGGAGAGCAAGTCGTGCCCAATGGACAACGGTGTTCAGCTTAAGGGAATTACATATCAGGTTGG
s cb4.chrX                421160 309 + 21540570 TTGATCCT---------------ATTA--TCAT----------ATTCAGAGAACCTTCCGAAATGAATTCCAAATGCGTCCTTGCCGTCC-TGGTTCTGATTTCATTGCCACTCGGCACGCCAGCTATGAGTCTTGTAAGTAAA----------ATCGCTAGTTTTCCGAAAACGAT-TGTGCTC----AATTT----------TT------ATAGAAGCGTCACTACCGTAGGCCGGTTTGCGAGCCATCGCAATCGTGCTCGTACAGTTACCAGCAGTTCACTTTCGAACTCTGCGACTGTCCACAGGCCGAGTCTTGCCCAATGGGTAATGGAGTTCAATTAAAAGGAATCACTTATCAGGTAAG
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig24   730820 316 +  1162296 TTCATCTT---------------AGCA--TCATTCATTAAATCATTCAGATTTCGTCATAAAATGCATCCACGATATTTACTCCCGATTT-TACTTCTAGTTTCTTTCCCAGCCTTCACGTCTACAATGACTCTAGTAAGTTTC----------AACACC------------ATGAT-GACACTCTTAGAATCTCGAAC-----TT------CCAGAAACGACACTACCGTAGGCCAGTATGCGAACCATCGCAGTCCTGCTCCTACAGTTACCAACAATTCACGTTTGAACTATGCGACTGCCCACAATCCAAGAGCTGTCCAATGGATAACGGCGTTCAGCTGAAAGGGATTACCTATCAAGttag
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold629  29889873 309 + 33334924 ATCAAATC-------------AAATCA--TCAT----------ATTTAGGAATCATCATAAAATGCACTCTCAATCTTTACTCTCGCTGC-TTCTACTACTCTCGTTTCCTGCTATTACGTCTACAATGACCTTAGTAAGTTATTCAGATTATGGGTGCc------------cttat-gaaaaaa----agttt----------tc------tcagAAACGACACTACCGTAGGCCTGTGTGCGAGCCTTCCCAATCTTGCTCCTATGGCTTCCAACAGTTCACCTTTGAACTTTGCGACTGTCCAGATGCCAAGCCGTGTCCAATGGACAATGGCGTCCAACTTAAAGGGATCACGTATCAGGTTGG
i caeSp111.Scaffold629  I 23 I 606
s caePb3.Scfld02_254       16849 322 -   193288 ttcaacttttctgtatTATGAAACTTA--TCTT----------TTTCAGACAACGAT-TGAAATGACTTTACGATGCCTTTTCAC-CTGCATACTGTTCGTTTCACTCCCTGTCCTTACTTCTTCAATGAcacttgtgagtttttggaa-----agttac------------gtcat-aattcaa----aagtt----------tcaaaaattcagaagacacCCTACCACAGGCCTGTTTGTGAACAATCGCAATCATGTTCATACGGCTTCCAACAATTCACTTTTGAACTCTGCGACTGTCCCGACTTCAGACCCTGTTCAATGAAAGACGGCGTTCAACTCAATGGAATTGTATATCaagtttg
i caePb3.Scfld02_254    I 928 C 0
s caeJap4.Scaffold54      126015 310 -   258924 tttacctt-----tttaaaaaaaacta--ttgt--------tCTTCCAGATCTCTTCACCAAATGCTCTTGCCGTGTTTTATAATTGCTC-TGTTTTTAG---------CAGCATCTACATTTTCCATGACTCTTGTAAGTAACA---------AAcatt------------gttatttattttc----ataTTCAATCCTG--TT------TCAGAACCGACATTACCGTAGACCTATTTGCGAGTTTTCACAGTCTTGTTCCTATGCTTACCAACAGTTCACATTTGAGTTGTGTGATTGTCCTAACATGAAGGCTTGTCCTACAAACCATGGTATTCAGTTAAAAGGGATTACGTATCAGGTATG
i caeJap4.Scaffold54    C 0 C 0

a score=910.000000
s ce10.chrX               629515 1 + 17718866 T
s cb4.chrX                421469 1 + 21540570 T
i cb4.chrX              C 0 I 555
s caeRem4.Crem_Contig24   731136 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 I 37
s caePb3.Scfld02_254       17171 1 -   193288 t
i caePb3.Scfld02_254    C 0 I 27
s caeJap4.Scaffold54      126325 1 -   258924 t
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629  29890182 606 + 33334924 I

a score=807.000000
s ce10.chrX               629516 2 + 17718866 GG
s caeRem4.Crem_Contig24   731174 2 +  1162296 GA
i caeRem4.Crem_Contig24 I 37 C 0
s caePb3.Scfld02_254       17199 2 -   193288 GG
i caePb3.Scfld02_254    I 27 C 0
s caeJap4.Scaffold54      126326 2 -   258924 gg
i caeJap4.Scaffold54    C 0 I 36
e cb4.chrX                421470 555 + 21540570 I
e caeSp111.Scaffold629  29890182 606 + 33334924 I

a score=-627.000000
s ce10.chrX               629518 45 + 17718866 AGAAGTGCAGAATC-CTGATCA--------------------CAACGCACTTGCGTC-------------------ACTTATGAC
s caeRem4.Crem_Contig24   731176 85 +  1162296 CGAAACCCAGCAACACTTATTCGCGGGAAGCAAAGAGAGTAAGAGAGCACTTGCGTCACCACTTCTCAAAATATAAACCTATGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254       17201 48 -   193288 CAAAATGAACTATcactgatct------------gaaaattcgaa------tgcGTC-------------------ACTTATGAC
i caePb3.Scfld02_254    C 0 I 275
e caeJap4.Scaffold54      126328 36 -   258924 I
e cb4.chrX                421470 555 + 21540570 I
e caeSp111.Scaffold629  29890182 606 + 33334924 I

a score=1644.000000
s ce10.chrX               629563 161 + 17718866 AAGGGATTGAGCTAAATTTGGTTTTTCGTCCAGCCGAGAGAGCCTCCTGATAAGCTTAGAGGAAAGCTTGGAAACATTCTTGTTTTGGTATAAAAATAAAATGACG----------AGACATAAAGAAATAAGGAAACTCATTTGTGGGAGT------GGATCTTTCTACCTTCAAC
s caeRem4.Crem_Contig24   731261 149 +  1162296 TAGGGCTCAACTTGGATGT-GTCTTTTTTCTA---GAGAGAAACCTTTTCTAAGTTTCAtg------------------ttgtttt------caattgaaatgatgtaatcattgaaaaaatacaaaacagaGGAATTTCATTTGTTAGAGTGGTCTCGGATCTTTGGGCTTTCAAC
i caeRem4.Crem_Contig24 C 0 I 577
e caePb3.Scfld02_254       17249 275 -   193288 I
e caeJap4.Scaffold54      126328  36 -   258924 I
e cb4.chrX                421470 555 + 21540570 I
e caeSp111.Scaffold629  29890182 606 + 33334924 I

a score=0.000000
s ce10.chrX               629724 1194 + 17718866  
e caePb3.Scfld02_254       17249  275 -   193288 I
e caeJap4.Scaffold54      126328   36 -   258924 I
e cb4.chrX                421470  555 + 21540570 I
e caeSp111.Scaffold629  29890182  606 + 33334924 I
e caeRem4.Crem_Contig24   731410  577 +  1162296 I

a score=378.000000
s ce10.chrX               630918 10 + 17718866 TTCCTGTAAA
s caeSp111.Scaffold629  29890788 10 + 33334924 TTCCTAAAAT
i caeSp111.Scaffold629  I 606 I 3
e caePb3.Scfld02_254       17249 275 -   193288 I
e caeJap4.Scaffold54      126328 36 -   258924 I
e cb4.chrX                421470 555 + 21540570 I
e caeRem4.Crem_Contig24   731410 577 +  1162296 I

a score=-2670.000000
s ce10.chrX               630928 17 + 17718866 AAAAAACTTCAAAAATC--------
s caeRem4.Crem_Contig24   731987 13 +  1162296 ------------AAACAAGTTCACA
i caeRem4.Crem_Contig24 I 577 C 0
s caeSp111.Scaffold629  29890801 17 + 33334924 TTGGAACATCTAAAACC--------
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_254       17524 15 -   193288 aagta--atgaaaaaca--------
i caePb3.Scfld02_254    I 275 C 0
e caeJap4.Scaffold54      126328 36 -   258924 I
e cb4.chrX                421470 555 + 21540570 I

a score=111988.000000
s ce10.chrX               630945 171 + 17718866 TTT------CAGTTTTGTGCGGCTCGAGAGCTGCCAGAATGCGCTTCCGACGAGACGGCAGCCGAGATCAACATGCTGCAAACATCAATTTACTGTGTATGCCCACCCAATCAGATTTATGTCAAACAGAAGGACACGTCA------AAAGCCAATGCTAAATACGTGTGCCAGGAAGTTAGT
s cb4.chrX                422025 177 + 21540570 ttt------cagtTCTGTGGATCCCGAGAATTGCCAGTATGCGCTCCTCATGAAATCGCTGCTGAGATTAACAATTTGCAAACTTCGATCTACTGCGTTTGtccattcgaaaaaatatatgttaAGCAGAAGGAATTGCCGATAAACAAAGTTAACGTGAAATACGTGTGTCAGGAagtgagt
i cb4.chrX              I 555 C 0
s caeRem4.Crem_Contig24   732000 171 +  1162296 TTT------CAGTTCTGCGGTGCTCGAGAACTCCCAGAATGCATGCCAGACGAGATTGCTGCTGAAATCAACTTTCTCCAAACCTCAATTTACTGTGTTTGCCCTCTTGATCAAATCTATGTCAAACAGAAGGAATCGTCG------AATGCTAGCGTAAAATACGTCTGCGAAGAGGTGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29890818 174 + 33334924 -TTGTATTCCAGTTTTGTGGTGCCCGAGAATTGCCAATGTGTGCTTCTGATGAGATTGCCGCTGAGATAGACGTTCTCCAAACGTCCATCTATTGTGTTTGTCCTCTGAATCAGATCTATGTCAAACAGAAGGAGACCGTG------AATGCCAACGTGAAATACGTGTGCCAGGAAGTAA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254       17539 170 -   193288 -TT------CAGTTCTGTGAAGCGAGAGACATCCCAACATGTACACTTGACGAGATTGCTGCCGAGCTTGACATGCTACAAACTTCAATTTACTGTCTTTGCCCACTGAATAAAGTATATACAAAGCAAAAAGGATCGACA------AGTCTTGCTGCAAAATACGTGTGCCAAGAAGTGAGT
i caePb3.Scfld02_254    C 0 n 0
s caeJap4.Scaffold54      126364 171 -   258924 TTT------TAGTTCTGTTCTGCTCGAAAACTTACAATGTGTGAACCTGATGAAATCGCCGCTGAAGTCGACATTATTCAAACTTCGATTTATTGTGTTTGCCCGCACACTGAAATATACGTAAAACGGAAGGACGAGTCT------AAAAGTGTCGTCAGATATGTGTGCCAAGAAGTGAGT
i caeJap4.Scaffold54    I 36 C 0

a score=-4178.000000
s ce10.chrX               631116 20 + 17718866 ------TTTTTTCGTTCTTTTATATT
s cb4.chrX                422202  2 + 21540570 ------------------tt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   732171  3 +  1162296 ------------------TTT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      126535 20 -   258924 TCAAAACGTTTTCTCatctt------
i caeJap4.Scaffold54    C 0 I 138
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeSp111.Scaffold629  29890992  0 + 33334924 C

a score=-14666.000000
s ce10.chrX               631136 229 + 17718866 GCGTGTTGTGCCGTCGTGTCAGTCAAAACCA-AACCACAAATTGTTTTGACATTTTCACATATATAAATATTTTTTTAGAG---------------TTTTATT----------------------------------GGGGTC--------TATATATCTA--TCTAGG--------------------GTATTTAG----------------------GACTC------------CAAATCTAAAAGAT---TTTTGAT-----------AGGTGCCAC---AAAG---TTCGCG---GAAAACACTGTTCACCGAGATTTACATCAAAAAGTCTTTCACCATGGGTATGAGTTTTT----GAATGAGA
s cb4.chrX                422204 243 + 21540570 -------------atttttttgatacatCCAGCGCCACAAATCGTTgtgacaaatttttcgaagacgaattatgtcaaaaa---------------ttctat-----------------------------------aCGACCCCGC----GAGATAT-----TCTGAATGTCTG--------------ATCTTTCA-------------TGACGAAATGAata---------ccaaaaatgaaaaagat----atTGTT-----------AGGCTCAACCGGAAAATGAATGGGAATCGAGATCGGTGGCCACAAAGATGTCAATCACGTATTCTGTCACGTTAGGTATAGTGTACc----gagtgaaa
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig24   732174 332 +  1162296 -----------CGGTGTGCCAGTCAAACCCACGACCACAAATTGTTTTGAC--ATTTTGCTCTCGTGgcttgtatctcaaaaccaCGGGGCGCTTTTTCTATTTATACTTTTGATTCAAATCTTAAcctcaaaatccaaaatcctGA----GAAATATCGGAATCAGAAGGCCGAGGC----AAACTACATATTTCGTCACTAGAATTACTGACGACATAGCTacatttctttctgaaactgagaaaaatcaaaactctt-----------AGGAACAAC---AAAATGGCCGGGAG--GACAT-GGTGTACACAAAGATTTCAATTACACAATCCGTTACCTTTGGTATAGTGAATCCCTTGAATGATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29890992 259 + 33334924 ---------------GTGTCAATCAGAAC----------AATTGTATTGTCATAGATATTTATCTGGATTTGtgattgaa----------------ttc--------------------------------------aaaatctcgattctggaaaaacCAAATCTAAATGTCAGAACCATTGAGCCA-GAATTTCGTCAC--AAATTTATGACGAGAagac--------------aaaatgagaaaaaggctTAATCTTTTGACCACTGAAGGAACAAC---AAAC---CTCGCCGCTGAAATCGGTGTTCACCAAGTACTCGATCACTCATTCTGTCACATTTGGTAACGA---------AAATGAGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126555 138 -   258924 I

a score=-1281.000000
s ce10.chrX               631365 18 + 17718866 TT----TTCGTAACCTTTTCTA-
s caeRem4.Crem_Contig24   732506 16 +  1162296 ------TTAGTAACAATTTGCG-
i caeRem4.Crem_Contig24 C 0 I 98
s caeSp111.Scaffold629  29891251 23 + 33334924 ATCAAGTGTGAAATAATCTTTTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeJap4.Scaffold54      126555 138 -   258924 I
e cb4.chrX                422447 14 + 21540570 I

a score=52.000000
s ce10.chrX               631383  7 + 17718866 ACC---TTTG
s caeSp111.Scaffold629  29891274 10 + 33334924 ACCAAATTCG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeJap4.Scaffold54      126555 138 -   258924 I
e cb4.chrX                422447 14 + 21540570 I
e caeRem4.Crem_Contig24   732522 98 +  1162296 I

a score=-3976.000000
s ce10.chrX               631390 102 + 17718866 AATTCACACCACAACACACATAACA------ACATTTTTTGTGTGTTCTTTTTTTTGACTTCACCACCCTCCCCTTCTGCTCTCCCTTTAATT-CCCGGTATTAAAGCT
s cb4.chrX                422461  76 + 21540570 ATTACACACTACTA-ATTTGACACT-------AACTCGTCTTTTGTTCCTTTGTGT---------------TTATGTTTGCCTCATCTCG----TTCGGTTTT------
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold629  29891284  96 + 33334924 AGTGAACGCAATAACGTTTGTCTCTTCCTAAAAACTTAAAGTCCATTTCCTTGTGTGTTCT------gttctcattcttttctcccaTCAACGTTTCGGCTT-------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126555 138 -   258924 I
e caeRem4.Crem_Contig24   732522  98 +  1162296 I

a score=12176.000000
s ce10.chrX               631492 94 + 17718866 AAAAATTACATGAATTATTCC----G------------TTT-ACATGACGGGAGCAGT-TTGGCATTT-CTAACCGCAAGAATGGTATGATGTTGTTT------GAGAAAAATAATGAG
s cb4.chrX                422537 93 + 21540570 -GAAATTACATTAATAATTCCCGCGG-------ATGTATTC-TCATGACG-----AGT-TTGGAATCC-TTAACCCAGA---------GATGTTGTTGAAGAT-GAGAGGGATAATGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   732620 97 +  1162296 aaaaattacattaaTAATTCCCATAGGCATGGTGTGTTTTCTTCATGACG-----AGT-TTGGCATTT-TTAACCCCGAG-------TGATGTTGTTT--------GAAGAATAATGAG
i caeRem4.Crem_Contig24 I 98 C 0
s caeSp111.Scaffold629  29891380 97 + 33334924 GAAAATTACATCAATAATTTGTGaag-----ctgaatattt-ttatgaCG-----AGTGCTGGCATTTATTAACCCC-----------TGTGTTGTTTGAGAGAGTGAAatatgatgaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeJap4.Scaffold54      126555 138 -   258924 I

a score=35568.000000
s ce10.chrX               631586 105 + 17718866 A-AATAATGGATGAAACA----------TTTATTATTCCTTTCATGCTTTTCAGAAAGCAA------TGTGCGAGCCTGGACAGATGTGCGGAGTTGGCAACCCAATCGTTGGCATCAAGTA
s cb4.chrX                422630  95 + 21540570 CTTTCTTTTTATGAAATA-----------TTCTCATTC----------TTTCAGAAAGAAA------TGTGCGAGGCCGGACAGATATGCGGAGCTGGAAATCATATTGTTGGAATCAAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   732717 103 +  1162296 A---ATGTGAATGAAATAA---GGTGCATTTattattc--t-----cttttcagaaagaaa------tgtGCGAGGTCGGACAGATGTGCGGAGTTGGAAACCCTATTGTTGGAATCAAGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29891477 102 + 33334924 a---------atgaagaaaaggggTTGATTtattattcctt-----tttttcagaaagaag------tATGCGAGGCCGGACAGATGTGCGGAGTTGGAAACCCTATTGTTGGAATCAAGTA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      126693 105 -   258924 --------AAATGATGTA---------TTTAATTATTACTTATTCTCTTTTCagaaaggaaaaaaggaaTGCGAGCCAGGAGAAATTTGTGGCGTTGGAAACCCTATAATAGGAATAAAGTA
i caeJap4.Scaffold54    I 138 n 138
e caePb3.Scfld02_254       17709   0 -   193288 I

a score=1146.000000
s ce10.chrX               631691 2 + 17718866 AG
s cb4.chrX                422725 2 + 21540570 AG
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig24   732820 2 +  1162296 AG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629  29891579 2 + 33334924 AG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709 0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I

a score=873.000000
s ce10.chrX               631693 3 + 17718866 GGA
s caeRem4.Crem_Contig24   732822 3 +  1162296 GGA
i caeRem4.Crem_Contig24 C 0 I 75
s caeSp111.Scaffold629  29891581 3 + 33334924 GGA
i caeSp111.Scaffold629  C 0 I 23
e caePb3.Scfld02_254       17709 0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e cb4.chrX                422727 64 + 21540570 I

a score=0.000000
s ce10.chrX               631696 701 + 17718866  
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e cb4.chrX                422727  64 + 21540570 I
e caeSp111.Scaffold629  29891584  23 + 33334924 I
e caeRem4.Crem_Contig24   732825  75 +  1162296 I

a score=489.000000
s ce10.chrX               632397 14 + 17718866 ATTTCTAAAACAAC
s cb4.chrX                422791 14 + 21540570 atttcaaagattat
i cb4.chrX              I 64 C 0
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e caeSp111.Scaffold629  29891584 23 + 33334924 I
e caeRem4.Crem_Contig24   732825 75 +  1162296 I

a score=38.000000
s ce10.chrX               632411 1 + 17718866 C
s cb4.chrX                422805 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629  29891607 1 + 33334924 C
i caeSp111.Scaffold629  I 23 C 0
e caePb3.Scfld02_254       17709 0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e caeRem4.Crem_Contig24   732825 75 +  1162296 I

a score=31711.000000
s ce10.chrX               632412 115 + 17718866 -TTATCATT-TTCCAGACACCTCTGCCACTGCGACGCCAACTCCCAATGCCAAATCACCTCACCGAACGTTTTCAGTCCAATGGTAATACAAAACGCAACCTGCCAGCCAATCTAGA
s cb4.chrX                422806 115 + 21540570 gtcttttt--ttttaggtcCTTCTGTCAATGCGTCGACAATCTCAAATGCCAAATCTCCATGCCAAACGTCTTCAATCCCCTCGTTATCCAGAACGCCACTTGTCAATCCGTCTAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   732900 114 +  1162296 -ttttcat--tttcaggcaaaCCTGCCAATGCGCCGCAAACTCCAGATGCCAAGTAACAGCGCCAAACGTCTTCAATCCCATTTCGATACAAAACGCCACGTGCCAACCAATCTAGA
i caeRem4.Crem_Contig24 I 75 T 10649
s caeSp111.Scaffold629  29891608 116 + 33334924 -TTTTCGTTATTCCAGACGCCTGTGCCAATGCGCCGCCAACACCCAATGCCAAGTTACAGCACCAAACGTATTCAATCCGcttttgattcaaaacgCAACTTGCCAACCGATGTAGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I

a score=-733.000000
s ce10.chrX               632527 5 + 17718866 AGCCC--
s cb4.chrX                422921 5 + 21540570 TGACC--
i cb4.chrX              C 0 n 0
s caeSp111.Scaffold629  29891724 5 + 33334924 --GCCTG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709 0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e caeRem4.Crem_Contig24   733014 10649 +  1162296 T

a score=3252.000000
s ce10.chrX               632532 474 + 17718866  
s caeSp111.Scaffold629  29891729 539 + 33334924  
i caeSp111.Scaffold629  C 0 n 0
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e cb4.chrX                422926   0 + 21540570 I
e caeRem4.Crem_Contig24   733014 10649 +  1162296 T

a score=0.000000
s ce10.chrX               633006 672 + 17718866  
e caePb3.Scfld02_254       17709   0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I
e cb4.chrX                422926   0 + 21540570 I
e caeSp111.Scaffold629  29892268   0 + 33334924 n
e caeRem4.Crem_Contig24   733014 10649 +  1162296 T

a score=103.000000
s ce10.chrX              633678 15 + 17718866 TGTTCCATAAAAGT--C
s caeSp111.Scaffold629  3448796 17 - 33334924 TGTGACAAAAATGTTGC
i caeSp111.Scaffold629  I 6906 C 0
e caePb3.Scfld02_254      17709  0 -   193288 I
e caeJap4.Scaffold54     126798 138 -   258924 I
e cb4.chrX               422926  0 + 21540570 I
e caeRem4.Crem_Contig24  733014 10649 +  1162296 T

a score=804.000000
s ce10.chrX              633693 23 + 17718866 TGACTTTTTAATACGGTGACCTA
s caeRem4.Crem_Contig24  435908 20 -  1162296 TGACTTTTTG-TAGTGTGTCT--
i caeRem4.Crem_Contig24 I 8402 C 0
s caeSp111.Scaffold629  3448813 18 - 33334924 TGATTTTTTG-----GCGACCTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      17709  0 -   193288 I
e caeJap4.Scaffold54     126798 138 -   258924 I
e cb4.chrX               422926  0 + 21540570 I

a score=3081.000000
s ce10.chrX               633716 14 + 17718866 GTTAACCATGAGAC
s cb4.chrX              21122500 14 - 21540570 GTTAACAATGTAAA
i cb4.chrX              I 7246 C 0
s caeRem4.Crem_Contig24   435928 14 -  1162296 ATTAGCAGTGAAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3448831 13 - 33334924 -TTAGCATTGAAGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254       17709  0 -   193288 I
e caeJap4.Scaffold54      126798 138 -   258924 I

a score=-3647.000000
s ce10.chrX               633730 4 + 17718866 AGAA-
s cb4.chrX              21122514 1 - 21540570 T----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   435942 1 -  1162296 T----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3448844 1 - 33334924 T----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      135471 4 +   258924 -AGAA
i caeJap4.Scaffold54    I 3877 C 0
e caePb3.Scfld02_254       17709 0 -   193288 I

a score=122843.000000
s ce10.chrX               633734 130 + 17718866 ACGGATTAGACGACTGTAGCTGTCCGAGGCTTCTTGCTGACGCTCCATTAGGCATTTCATCCTCATCCTCACCATCCTTACGTACACGACGCCATTTTGCCCTTCTGTTTTGAAACCATGTTTTAACCTG
s cb4.chrX              21122515 130 - 21540570 AGGGGTTTGAAGACTGTAACTGCCCGAGGCTTCTTGCTGACGCTCCATTTGGCATCTCATCTTCATCTTCGCCATCCTTACGTACACGACGCCATTTGGCACGTCTGTTTTGGAACCAGGTCTTGACCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   435943 130 -  1162296 AAGGATTTGACGCCTGAAGTTGTCCAAGGCTTCTTGCTGACGCTCCATTTGGCATCTCGTCCTCGTCTTCACCATCTTTACGTACACGACGCCATTTGGCACGTCGATTTTGAAACCATGTCTTgacctg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3448845 130 - 33334924 AGGGATTTGACGTCTGAAGTTGTCCGAGGCTTCGTGCTGACGCTCCATTTGGCATCTCGTCTTCATCCTCGCCGTCCTTACGAACTCGACGCCATTTGGCTCGTCTATTTTGGAACCAAGTTTTTACCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      179727 130 +   193288 ATGGGTTTGACATTTCAAGTTGTCCTAGACTTCTTGCTGAAGCTCCATTTGGCATTTCATCTTCGTCTTCACCGTCTTTCCGAACACGACGCCATTTGGCGCGTCTGTTTTGAAACCACGTCTTCACCTg
i caePb3.Scfld02_254    I 5863 I 481
s caeJap4.Scaffold54      135475 124 +   258924 AAGAATTTG---TCTGAATTTGCCCAAGACTTCTTGCTGAGACCCCATTAGGCATCTCATCCTCATCCT---CGTCTTTACGAACTCTTCGCCACTTTGCGCGTCGGTTTTGGAACCAAGTTTTGACCTG
i caeJap4.Scaffold54    C 0 C 0

a score=-984.000000
s ce10.chrX               633864 3 + 17718866 -AAA
s cb4.chrX              21122645 3 - 21540570 -GAA
i cb4.chrX              C 0 I 320
s caeRem4.Crem_Contig24   436073 3 -  1162296 -aaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3448975 3 - 33334924 -TAa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      135599 3 +   258924 TTA-
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      179857 481 +   193288 I

a score=1474.000000
s ce10.chrX               633867 7 + 17718866 AGATCAA
s caeRem4.Crem_Contig24   436076 5 -  1162296 --atcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3448978 5 - 33334924 --acaaa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      135602 7 +   258924 GAATCAA
i caeJap4.Scaffold54    C 0 I 29
e caePb3.Scfld02_254      179857 481 +   193288 I
e cb4.chrX              21122648 320 - 21540570 I

a score=851.000000
s ce10.chrX               633874 5 + 17718866 ATGTT
s caeRem4.Crem_Contig24   436081 5 -  1162296 aagtt
i caeRem4.Crem_Contig24 C 0 I 597
s caeSp111.Scaffold629   3448983 5 - 33334924 acgtt
i caeSp111.Scaffold629  C 0 I 723
e caePb3.Scfld02_254      179857 481 +   193288 I
e caeJap4.Scaffold54      135609 29 +   258924 I
e cb4.chrX              21122648 320 - 21540570 I

a score=0.000000
s ce10.chrX               633879 1055 + 17718866  
e caePb3.Scfld02_254      179857  481 +   193288 I
e caeJap4.Scaffold54      135609   29 +   258924 I
e cb4.chrX              21122648  320 - 21540570 I
e caeSp111.Scaffold629   3448988  723 - 33334924 I
e caeRem4.Crem_Contig24   436086  597 -  1162296 I

a score=124.000000
s ce10.chrX               634934  9 + 17718866 TTTCTTCAA--
s caeRem4.Crem_Contig24   436683 11 -  1162296 ttttctcaacc
i caeRem4.Crem_Contig24 I 597 C 0
e caePb3.Scfld02_254      179857 481 +   193288 I
e caeJap4.Scaffold54      135609 29 +   258924 I
e cb4.chrX              21122648 320 - 21540570 I
e caeSp111.Scaffold629   3448988 723 - 33334924 I

a score=2303.000000
s ce10.chrX               634943 43 + 17718866 TACCGTACTCT----TATTGACCCATTCCCGCCCT--TTCGCGCACCTC
s caeRem4.Crem_Contig24   436694 48 -  1162296 tacagtaccccata-TATTTgctttctctcatttcatccCGCGCACCAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3449711 47 - 33334924 taccGTACTCCCTCTTATTGACACTCCCCTATTCC--CGCGCAAACAGC
i caeSp111.Scaffold629  I 723 C 0
e caePb3.Scfld02_254      179857 481 +   193288 I
e caeJap4.Scaffold54      135609 29 +   258924 I
e cb4.chrX              21122648 320 - 21540570 I

a score=-1936.000000
s ce10.chrX               634986 6 + 17718866 CAATGA-
s cb4.chrX              21122968 6 - 21540570 -CATtac
i cb4.chrX              I 320 C 0
s caeRem4.Crem_Contig24   436742 1 -  1162296 ------C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3449758 6 - 33334924 CAATGA-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      179857 481 +   193288 I
e caeJap4.Scaffold54      135609 29 +   258924 I

a score=-2612.000000
s ce10.chrX               634992 12 + 17718866 --------AAAC------ATGGAAAT
s cb4.chrX              21122974 13 - 21540570 aaacacaaaaat-------------t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   436743 26 -  1162296 AATCATCAAAATAATTGCGATTCAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3449764 12 - 33334924 --------AAAT------AATCCAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      180338 12 +   193288 --------AAGT------ATGTTTAT
i caePb3.Scfld02_254    I 481 C 0
e caeJap4.Scaffold54      135609 29 +   258924 I

a score=118656.000000
s ce10.chrX               635004 118 + 17718866 TACCTGTCGCTCGCTGAGGCTCAAAGACTTTGCAAGTTTCTTCCGCTCTTGGGGACTCAAATACTTATGTGAATCGAATTTGTGCTCCAACGCATCGGTTTGCTCATTGGTGAATCTG
s cb4.chrX              21122987 118 - 21540570 tacCTGTCGTTCACTGAGACTCAATGACTTTGCAAGTTTTTTCCGTTCTTGGGGACTCAAATACTTGTGACTATCAAACTTATGTTCCAGAGCATCAGTTTGTTCATTggtaaacctg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   436769 118 -  1162296 TACCTGTCGTTCACTGAGACTTAAAGACTTGGCAAGTTTTTTCCTTTCCTGTGGACTAAGATACTTGTGACTATCAAACTTGTGCTCCAATGCGTCAGTCTGCTCATTGGTGAACCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3449776 118 - 33334924 TACCTGTCGTTCACTGAGGCTTAACGACTTGGcgagtttttttcgttcctGGGGGCTCAAATACTTGTGACTATCAAACTTATGTTCTAACGCATCGGTCTGCTCGTTGGTAAATCTG
i caeSp111.Scaffold629  C 0 I 115
s caePb3.Scfld02_254      180350 118 +   193288 TACCTGACGTTCGCTGAGACTCAACGACTTGGCAAGtttttttCGTTCCTGCGGGCTCAAATACTTGTTACTATCAAATTTGTGTTCCAATGCATCAGTTTGCTCATTTGTGAAtctg
i caePb3.Scfld02_254    C 0 I 2
s caeJap4.Scaffold54      135638 118 +   258924 TACCTGTCTCTCGCTAAGATTCAAGGATTTAGCCAGTTTTTTACGCTCCTGGGGGCTTAGGTATTTGTGAGCATCAAATTTGTGTTCAAGTGCGTCAGTTTGCTCGTTTGTGAATctg
i caeJap4.Scaffold54    I 29 C 0

a score=-18548.000000
s ce10.chrX               635122 14 + 17718866 AATCGTATAGT--------------------------------------------------------------------ATC-
s cb4.chrX              21123105  1 - 21540570 ------a----------------------------------------------------------------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig24   436887  8 -  1162296 ------AAAAC--------------------------------------------------------------------ACT-
i caeRem4.Crem_Contig24 C 0 I 73
s caeSp111.Scaffold629   3450009 14 - 33334924 AATCGTATAGT--------------------------------------------------------------------ACT-
i caeSp111.Scaffold629  I 115 I 11
s caePb3.Scfld02_254      180470 82 +   193288 aatgagaaagtttGGTAGTGTTTTGGGtgttcctcaaaaaaaatcagaggcTTAAAAGTCAAAAAGATTCAACGCTTCAACt-
i caePb3.Scfld02_254    I 2 I 11
s caeJap4.Scaffold54      135756 11 +   258924 ------------------------------------------------------------------------gaatttaattt
i caeJap4.Scaffold54    C 0 C 0

a score=-14222.000000
s ce10.chrX               635136  24 + 17718866 GTTA--------------TGAG----------------------------------------AACAT---------------------------------CGAAAGGAGA-C
s caeSp111.Scaffold629   3450034  39 - 33334924 gatt--------------tgaa--------------------------------atgCTATATACACAACTGGG--------------------------TGAAAGGAAa-t
i caeSp111.Scaffold629  I 11 I 54
s caePb3.Scfld02_254      180563 112 +   193288 cattcagtttcttttttctgaaatcacagGGAGTGTAAATACATATTTCAAGCTATGCTAGAAAGATACCCTGGACATGTCTTGAGTCACAAAATGTAACTGTAAGGAAAGC
i caePb3.Scfld02_254    I 11 I 70
s caeJap4.Scaffold54      135767   7 +   258924 --------------tttgtga-------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21123106  12 - 21540570 I
e caeRem4.Crem_Contig24   436895  73 -  1162296 I

a score=44261.000000
s ce10.chrX               635160 132 + 17718866 GTGACATT--TATAAT----------------TTGAAATGTC-----GTTTCGAGCAAGATTATAATAGAAAATGAACCTTATCTGTCCTCCTTTCCTCTTCTGCGGGGACTTGCTCATGTACGGGTACAACCATGAAAGCCGAGGATCCCACAT
s cb4.chrX              21123118 110 - 21540570 tcaatacc--tatgaa-------------------aattttc-----ac-------------------aaagaTTTACCTGATTTGCCctcctttccttttttgtggAGACTTGTTCATATATGGATAAAGCCAGGAAATTCGCGGGTCCCACAT
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24   436968 113 -  1162296 tgaataacaaaacaaa-------------------aagtgtc-----aTGAC---------------GAAACATGTACCTGATTTGCCCTCCTTTCCTTTTCTGTGGGGATTTGCTCAAATATGGGTAAAGCCAGG---CTCGGGGATCGAACAC
i caeRem4.Crem_Contig24 I 73 C 0
s caeSp111.Scaffold629   3450127 127 - 33334924 ATAGCAATGAAACAAATTCTTC----------Gtgacatttc-----attttt-------------tgcgtTACTAACCTGATTTGTCCTCCTTTCCTTTTCTGTGGGGACTTGTTCATATAGGGATAGAGCCAAGAAATGCGGGGGTCCCACAT
i caeSp111.Scaffold629  I 54 C 0
s caePb3.Scfld02_254      180745 142 +   193288 TTCACAAGAAGATAACTTAGTCTTTCTGATGattgaaattccagaagatTACT-------------TTAATCACTTACCTTATTTGGCCACCTTTCCTTTTCTGAGGAGACTTGCTCATATAGGGATAGAGCCAAGTGAGACGGGGGTCCCACAT
i caePb3.Scfld02_254    I 70 C 0
s caeJap4.Scaffold54      135774 116 +   258924 ------------------------------atttggAATTTA-----ACAagc----aaaatattaaaaaaaaaaaaccttatcTGTCCCCCTTTCCTTTTCTGTGGAGATTTACTGATGTATGGATACAACCATGATAATCGGGGATCCCAAAT
i caeJap4.Scaffold54    C 0 I 428

a score=9059.000000
s ce10.chrX               635292 39 + 17718866 ATTTCCCATCGTCTGATTGACATTCACTGCAA-GTAAATA------------
s cb4.chrX              21123228 35 - 21540570 ATTTCCCATATGTTGACTGCCGTTCACTGTAA-CAA----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   437081 39 -  1162296 ATTTCCCATTGGCTGGGCCACgttcactgaaa-atatata------------
i caeRem4.Crem_Contig24 C 0 I 83
s caeSp111.Scaffold629   3450254 51 - 33334924 GTTTCCCATTGACTGATTTACATTCACTGCAA-TGATATTCAttagattttg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      180887 52 +   193288 ATTGCTCATTGTTTGGTTTACGTTCACTGTAAGTGATAAATGTTTATgtaca
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      135890 428 +   258924 I

a score=-16162.000000
s ce10.chrX               635331  42 + 17718866 AAGTAAATAA-------------TAATTGATATTAATA--------CACTGGAAGCCATTAAA---------------------------------------------------------------------------------------------------
s cb4.chrX              21123263  78 - 21540570 ----AAACGAACACcgattgattttttcgata--attttttttccctaactagaaaaaaaatatt---------------------------------tgctgAAACATGGGTTATC---------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3450305 143 - 33334924 ----aaagag-------------tgttgaaaa--aatatcaaactGTTTCgagaaccaaaaaatcaaaaaactgcttTTGATTCTAAAGGTTttagaatatttgaataaagGTTATACAGCACAAAGTACTCATAATCACTTTGAACTTTCAGGCAATTTTA
i caeSp111.Scaffold629  C 0 I 67
s caePb3.Scfld02_254      180939  48 +   193288 ----aaataa-------------ttttcgatg--AATA-----------CGAAAAACAAGACACC--------------------------------------GGATA----------------------------------------------CAATTCAA
i caePb3.Scfld02_254    C 0 I 320
e caeJap4.Scaffold54      135890 428 +   258924 I
e caeRem4.Crem_Contig24   437120  83 -  1162296 I

a score=38.000000
s ce10.chrX               635373 1 + 17718866 T
s cb4.chrX              21123341 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3450515 1 - 33334924 C
i caeSp111.Scaffold629  I 67 C 0
e caePb3.Scfld02_254      180987 320 +   193288 I
e caeJap4.Scaffold54      135890 428 +   258924 I
e caeRem4.Crem_Contig24   437120 83 -  1162296 I

a score=30866.000000
s ce10.chrX               635374 125 + 17718866 TCTCATAATAAGATGAGC----TCAGTGTTATTTGCACAACTAATTAGATTGGTTACCCCTCCTAATCCCAGTGGTTCGTTATGATTAGTGATCCGCTGCTGCGAACAAGATTTAATGTTTGTTTTCAA
s cb4.chrX              21123342 119 - 21540570 ACCCAT-----GATAAATCCTCTCAGAC-TGTTTACTCAACTAATTTGATTAGCTA---CCTATAATCC-AATTGTTAGTTATGATTGCTAATCCCTTTATGAGAACAAGGTAAGGtatttgttttcaa
i cb4.chrX              C 0 I 531
s caeRem4.Crem_Contig24   437203 119 -  1162296 TCCCATGAGAGGATAAGT------AGACATGTTTGCTCACCTAATTAGATTAGTTA---CCCCTAATCC-AGTGGTTAGTTATGATTAGTGATCCGCTGCTGCGAACAAGATTCTGtgtttgttttcaa
i caeRem4.Crem_Contig24 I 83 C 0
s caeSp111.Scaffold629   3450516 115 - 33334924 TCCCATAAAAGGATGAGC------AGTTGTGTTTGCTTAACTAATTAGATTAGTTACTGCCCATAATCC------CTAGTTATGATTAGTGATCCCT--ATGCGAACAAGATTaaatgtttgttttcaa
i caeSp111.Scaffold629  C 0 I 111
e caePb3.Scfld02_254      180987 320 +   193288 I
e caeJap4.Scaffold54      135890 428 +   258924 I

a score=321.000000
s ce10.chrX               635499 97 + 17718866 GTCTCTAGGTATTTGATTAT--TTGATATGTAATGAAAAGTCAATCAGCAT---TTGAAAACTTTTTTCAATAAAATTGAAAGGTTTATAAAAAGTGAATAA
s caeRem4.Crem_Contig24   437322 94 -  1162296 tattaatGACAAATGACTACCATTGATATGTCAGGATTAATT-ATTGGCATTTATTGGTATATTTgtttgat--atttgaaa--tctATGAA---TGAATAA
i caeRem4.Crem_Contig24 C 0 I 484
e caePb3.Scfld02_254      180987 320 +   193288 I
e caeJap4.Scaffold54      135890 428 +   258924 I
e cb4.chrX              21123461 531 - 21540570 I
e caeSp111.Scaffold629   3450631 111 - 33334924 I

a score=0.000000
s ce10.chrX               635596 896 + 17718866  
e caePb3.Scfld02_254      180987 320 +   193288 I
e caeJap4.Scaffold54      135890 428 +   258924 I
e cb4.chrX              21123461 531 - 21540570 I
e caeSp111.Scaffold629   3450631 111 - 33334924 I
e caeRem4.Crem_Contig24   437416 484 -  1162296 I

a score=910.000000
s ce10.chrX               636492 1 + 17718866 A
s cb4.chrX              21123992 1 - 21540570 A
i cb4.chrX              I 531 C 0
s caeRem4.Crem_Contig24   437900 1 -  1162296 A
i caeRem4.Crem_Contig24 I 484 C 0
s caePb3.Scfld02_254      181307 1 +   193288 a
i caePb3.Scfld02_254    I 320 C 0
s caeJap4.Scaffold54      136318 1 +   258924 A
i caeJap4.Scaffold54    I 428 C 0
e caeSp111.Scaffold629   3450631 111 - 33334924 I

a score=47848.000000
s ce10.chrX               636493 390 + 17718866  
s cb4.chrX              21123993 390 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   437901 398 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3450742 412 - 33334924  
i caeSp111.Scaffold629  I 111 I 48
s caePb3.Scfld02_254      181308 447 +   193288  
i caePb3.Scfld02_254    C 0 I 1
s caeJap4.Scaffold54      136319 369 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=-6430.000000
s ce10.chrX               636883 35 + 17718866 ACCCCCAAAATCAATTTTTAATCCCCACACAAGAG
s cb4.chrX              21124383 22 - 21540570 ------AAAA-------GTTATTTACAACCACCAA
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24   438299 18 -  1162296 ------A-----------TTATTCTCATATAATAA
i caeRem4.Crem_Contig24 C 0 I 35
s caePb3.Scfld02_254      181756 18 +   193288 -----------------atttttttcatattttaa
i caePb3.Scfld02_254    I 1 I 36
s caeJap4.Scaffold54      136688  6 +   258924 -----------------------------CAAGAG
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3451154 48 - 33334924 I

a score=75636.000000
s ce10.chrX               636918 179 + 17718866 ATGAGG--CTAATTGAAAAG-------------GCGGTAATGTGAAGAACGGAGCAATGAAAGCGATAG----CCCT-GCTTGACATACA-CAAAGGGGCGGGAAGGTACGGTAGGGGAAG---AGC------TAAGAGTGAGA----------GGAAGAGCATATCGAGCA----------AATAGTGTCTATTCTGATTCCGACGCTAATTTGTTGGTATCGTATGT
s cb4.chrX              21124411 186 - 21540570 GTGGAGCTTCAATTAATAG---------------TGGTAATGTGAAGAA-AGAGCAATGAAAGCAATAGCCA-CTCT---TTGACATACA-AGAAGGGGCGGGA--GTACGGTAGTTGGGA---CGCGGGGATAGAGAGTGTAAGAA------TGGAGAAGCACATCGAGCA----------AATAGTGTCTATTCTGATTCCGACACTAA-TTGCTGGTATCGGATGT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   438352 170 -  1162296 ATCAAACTCTAATTGAAAG---------------CGGT------AAGAA-GAAGCAATGAAAGCGATAGCCC-CCCT-TCTTGACATACA-CAAAGGGGCGGGT--GTACGGTAG--GGAG---CTC------AGAGAGTGGGA-----------GAGGAGCATATCGAGCA----------AATAGTGTCTATTCTGATTCCGACGCTAATTTGTTGGTATCAAATGT
i caeRem4.Crem_Contig24 I 35 C 0
s caeSp111.Scaffold629   3451202 178 - 33334924 GTG------TAATTGAAAA--------------GCGGTAATGTGAAGGA-GCAGCAATGAAAGCAATAGCCGTCTCA-TCTTGACATACACAAAGGGGGCGGGA--GTACGGTAGAGGGTGCTACTC------AGAGAGTGG-----------GGGAAGAGCATATCGAGCA----------AATAGTGTCTATTCTGATTCCAACGCTAATTTGTTGGTATCGAATAT
i caeSp111.Scaffold629  I 48 C 0
s caePb3.Scfld02_254      181810 189 +   193288 ATAGA---CCAATTCAAAG--------------CGAGCAATGTGGAAAG-AGAGTAATGAAAGCGATAG----CTCT-TCTTGACAAACA-GAAGGGGGCGGGA--TTACGGTAGCACGAG---TTT------GGAGAGTGGAAGAG-----AGGGACGATCAAATTGAGCAATGAACAAATAAAATAGTCTATTCTGATTCCAATGCTCATTTATAGCTATCATGTAT
i caePb3.Scfld02_254    I 36 I 1063
s caeJap4.Scaffold54      136694 187 +   258924 -------TTGAAGCGTAAAAAATAATGAGCTGTAGAGTGATGAGGAGCA-AAATCAGCGAAAGCGATAG----CTCTAACCCAACGTACACAAAGGGGGCGGGA--ATACGGTAG---------TGA------AGAGAGCATTTGGCTCGGTTTGCGCATCCATGTC-AGCA----------AATA--GTCCATTCTGATTTGGACGTTAATTTGGTGGTATCGAATGC
i caeJap4.Scaffold54    C 0 C 0

a score=-498.000000
s ce10.chrX               637097 8 + 17718866 CTTCGTGG
s cb4.chrX              21124597 8 - 21540570 CCAGTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   438522 8 -  1162296 CCCAATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3451380 7 - 33334924 -CTTCTAG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      136881 8 +   258924 CACCGCgg
i caeJap4.Scaffold54    C 0 I 295
e caePb3.Scfld02_254      181999 1063 +   193288 I

a score=5701.000000
s ce10.chrX               637105 70 + 17718866 AAATT-------GAATAGGGGTATCAATTCACAAAACATGGAAAAACACTGAAAACAAGTATTAAATTGATTTCTAT
s cb4.chrX              21124605 67 - 21540570 GCATGACCCGACAAGAATGGGAATCAACTCACAAAACATGAAAGAACAT----------CACTGGATAAGTTTCCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   438530 65 -  1162296 ACATG-------GGAGAGGAGAATCATTTCACAAAACATGAAAGAGCATT-----TGAGCATTTAGGAAAATGCTTT
i caeRem4.Crem_Contig24 C 0 I 1797
s caeSp111.Scaffold629   3451387 43 - 33334924 ACATG---------------GAATCATTTCacaaagaatgaaagaacaA----------CAT---------TGCTGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I

a score=546.000000
s ce10.chrX               637175 2 + 17718866 TT
s cb4.chrX              21124672 2 - 21540570 TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3451430 2 - 33334924 TT
i caeSp111.Scaffold629  C 0 I 130
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=-316.000000
s ce10.chrX               637177 50 + 17718866 AGAACTGTGTGGACTGTATTACAGATGGTGAGCAACAATTTGCAACGACA
s cb4.chrX              21124674 22 - 21540570 -------------------------TGGTAGTCGAGAAAT---AACgata
i cb4.chrX              C 0 I 113
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeSp111.Scaffold629   3451432 130 - 33334924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=0.000000
s ce10.chrX               637227 107 + 17718866 CCTTTATTGGTAAAAGGAGCCTGAATATTTGGAAGAGCACATTTTCAAGCTGACGCTATCAGTATTGCAGTTAGTGTCGAGCCTAGTAAGTAATTTGGTAACTGGAT
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e cb4.chrX              21124696 113 - 21540570 I
e caeSp111.Scaffold629   3451432 130 - 33334924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=615.000000
s ce10.chrX               637334 20 + 17718866 AATTTTTCGGATAAAAAACT
s caeSp111.Scaffold629   3451562 17 - 33334924 aatttttccgaCAAGA---T
i caeSp111.Scaffold629  I 130 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e cb4.chrX              21124696 113 - 21540570 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=-4260.000000
s ce10.chrX               637354 86 + 17718866 ---ATAATTATTCAAAAGCTCCGAAGAGGCAAATAAAGCAGATACTGTATGTTTCACCAATGTAGATCATCACCACATAGTTCAAAAGG--
s cb4.chrX              21124809 58 - 21540570 ---ataatttctgaaacattttg--------aat----ccAATAACCtagctttttttaaataag------------------gAAAAACG
i cb4.chrX              I 113 C 0
s caeSp111.Scaffold629   3451579 62 - 33334924 TGGGTTGTttcaaactcattttt--------attatcaCTAATAGTA-AGATGTCTCCGGAGTTG------------------AAAAGG--
i caeSp111.Scaffold629  C 0 I 17
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=-326.000000
s ce10.chrX               637440 38 + 17718866 TAGCCAGAAACTATCAGCCGTCTAAAGTAAGATGAACA
s cb4.chrX              21124867 17 - 21540570 GGTCGAGAAATTATCA---------------------A
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeSp111.Scaffold629   3451641 17 - 33334924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=-1414.000000
s ce10.chrX               637478 36 + 17718866 TTTAAATGTATTAAGCTCTAAGCATCCTGAACTTGT--
s cb4.chrX              21124884 25 - 21540570 --------TGCTAT--TTTATATAATTT---CAAGTAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3451658 36 - 33334924 TTTGATTGTCTTAA--TTAATACATTTTGAccagttat
i caeSp111.Scaffold629  I 17 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeRem4.Crem_Contig24   438595 1797 -  1162296 I

a score=604.000000
s ce10.chrX               637514 4 + 17718866 TTTT
s caeRem4.Crem_Contig24   722365 4 +  1162296 TCCT
i caeRem4.Crem_Contig24 T 10649 C 0
s caeSp111.Scaffold629   3451694 4 - 33334924 tttt
i caeSp111.Scaffold629  C 0 I 107
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e cb4.chrX              21124909 0 - 21540570 C

a score=-5624.000000
s ce10.chrX               637518 118 + 17718866 GATAATCTTCATATTATAAAAGTTGAAGCAATTTGTTAATGCCCAAG-----ATGGGCA-AAAAAGCATTTACTTCGTTTGATTTCAACTGTAGATTGCACATTTCTACCACATTATAATTTAG--
s cb4.chrX              21124909  80 - 21540570 ----------TTATGTTCAAATG-----GAATGTG-----GTTCGAACTTGTACATCCATAAAATGTATTCCTGTCATTTA---TCGA----------GATACCT-----------CAATTTGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722369  91 +  1162296 GACAATTTTGGTATATTAACACTCGC--AAACATA-----GCATAAG-----AAAGACATAAATACAATTTCTATT--------TCAA----------GACATTC-----ATATAACAATTCTATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I
e caeSp111.Scaffold629   3451698 107 - 33334924 I

a score=1692.000000
s ce10.chrX               637636 3 + 17718866 TGA
s cb4.chrX              21124989 3 - 21540570 TGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722460 3 +  1162296 TGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3451805 3 - 33334924 TGA
i caeSp111.Scaffold629  I 107 C 0
e caePb3.Scfld02_254      181999 1063 +   193288 I
e caeJap4.Scaffold54      136889 295 +   258924 I

a score=19647.000000
s ce10.chrX               637639 55 + 17718866 TCACTTCACTTTTC-AATGATC--CTTCATCTATTTGTCTCCGATTTCTTG---------------------TACACTG
s cb4.chrX              21124992 58 - 21540570 TCACTTCACTTTTCAAATGatctttttcaaatgtttgtcTCCGATTCCTTC---------------------CTAACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722463 56 +  1162296 TCACTTCACTTTTC-AATGATC--CTTCATTTATTTGTCTCTGATTCCTTCA--------------------CCATCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3451808 77 - 33334924 tcacttcaattttc-aatgatc-CTTCCATTTATTTGTCTCCGATTCTTTCGTCtccttcatcatcatttctcttaCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      183062 54 +   193288 TCACTTCACTCTTC-AATCATA-TTCTCAATCATTTGCTCCCGATTCTTT-----------------------TCAATA
i caePb3.Scfld02_254    I 1063 C 0
e caeJap4.Scaffold54      136889 295 +   258924 I

a score=61806.000000
s ce10.chrX               637694 88 + 17718866 CAAATCAGTA-GCTCGT---ATATTTT----C-----CGCTCTGC----TTTTCTTGTCAAACACGATTGAATTACGGTATCAT-CAAAG-CATTATCATCAATCG-G-
s cb4.chrX              21125050 85 - 21540570 CAAATCAGTT-GCTCAT---ATATTTT----C-----CGCTTC------TTTTCTTGTCAAACACGATTTAATTACGGTATCATCCAAAG-CATTAT-ATCAATCG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722519 94 +  1162296 CAAATCAGTA-GCTCAT---ATATTTTCCTGC-----CGCTTCTCGTCGTTTTCTTGTCAAACACGATTGAATTACGGTATCAT-CAAAG-CATTAT-ATCAATCG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3451885 82 - 33334924 CAAATCACTA-GCTCAT---ATATTTT----C-----CGCTT-------TTTCCTTGTCAAACACGATTGAATTACGGTATCAT-CGAAATCATTTT-ATCAAT-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      183116 93 +   193288 CAAGCCGCCACGCTCTCTCAATGTTTT----CCTCGTCgcat-------ttttcttgtcaaaCACAATTAAATCAGGGTATCAT-CGAGG-CATTAT-ATCAATCgg--
i caePb3.Scfld02_254    C 0 I 920
s caeJap4.Scaffold54      137184 85 +   258924 CAAATCAGTA-GCtcat---atatttt----c----ttgctt-------aTTCTTTGTCAAACACAATTGAATTACGGTATCAT-CAAAG-CATTAT-ATCAATAG--G
i caeJap4.Scaffold54    I 295 I 2716

a score=14765.000000
s ce10.chrX               637782 203 + 17718866 GCGGAGGTGCCTCTCTGT--------------------CAACCACCG-----------------------------CTCAATTCGCTGCTATCAACCCTTTTTCTTG------------------CTGTCTTTTGTGCTTT--TCTACACAAATGATCAAATA-----GTGGGAAGAAAGCAGCACTC---AAATCAAATTGTCGAGTGA---TTTTTTTATAGATAGAAGACTTCTTTCTCATTTGATGA-ACGAGCGAGAAAGACAATTGTTGA---GTAGGCGG
s cb4.chrX              21125135 253 - 21540570 ---GCGGTCTGTCTGTGTATTTATCGCAGCAGTAACAGCAACAACCGACAAGAATCAACCAATTGTAGTTGATGCTCTCGATT---TcctatcaattttcttctcatcGCCCTCCCTCAACTCATCTCATTGTGATGCTTT--TCCAT-CAAATGATCAAATA-----GTGGAGA------AGCACTCGATGAATCGA--TGTCTAGTCG-----TTTTCAACATCTAGA---TTTCCTTGCATTCTTGCC-GCACGCGCGAAAAAGTATCGATGG---GTGGGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722613 215 +  1162296 ---GCGGTCT----------------------------CCACTCCCGACAAGAATCAACCAATTGCAGTTG--TCTCTCGATT---Tgcaatcaacttttttttctt---------ttggctCTTCTGTTTGTGATGCTTT--TCTCT-CAAATGATCAAATA--ATGATGGAAA------AGCACTC---GAATCAA--TGTTGAGTCG---tttttttATAGGCTGGA---TTCGTTTTCATTCATGTC-TCGAGCGCGAAAGACGATTGCTGA---GGAGGCG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3451967 213 - 33334924 -CGGCGGTCTCTCG------------------------CTTCTCGGGGTGGGAA------------AGCAG------TCGATT---TGCTAtcaactcaatttttct-----------ggCTTCTCT-TTTGTGATGCTTTTCTCCAT-CAAATGATCAAATAGAGTGGTGGAAA------AGCACTCAATACAGAAA--TGTTGAGCAGcattttttttatagttCGGA---GTCGAT----TTCTTGTCGGAGCGCGCGAAAGACACTTGTTAACATGTGGGCGG
i caeSp111.Scaffold629  C 0 I 250
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I

a score=100.000000
s ce10.chrX               637985 1 + 17718866 C
s cb4.chrX              21125388 1 - 21540570 C
i cb4.chrX              C 0 I 837
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e caeSp111.Scaffold629   3452180 250 - 33334924 I
e caeRem4.Crem_Contig24   722828 0 +  1162296 C

a score=933.000000
s ce10.chrX               637986 15 + 17718866 GCGCGGATACTGTAG
s caeRem4.Crem_Contig24   722828 13 +  1162296 --GTGGGTACTGTAG
i caeRem4.Crem_Contig24 C 0 n 0
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeSp111.Scaffold629   3452180 250 - 33334924 I

a score=0.000000
s ce10.chrX               638001 827 + 17718866  
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeSp111.Scaffold629   3452180 250 - 33334924 I
e caeRem4.Crem_Contig24   722841   0 +  1162296 n

a score=364.000000
s ce10.chrX               638828 12 + 17718866 TTGCTCAATACA
s caeRem4.Crem_Contig24   440392 12 -  1162296 TTGTGCAATTAA
i caeRem4.Crem_Contig24 I 1797 C 0
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeSp111.Scaffold629   3452180 250 - 33334924 I

a score=-82.000000
s ce10.chrX               638840 43 + 17718866 TCGCCCATCTCA--TACACATTGTATTCAGTGAGAGTCGTTTTGC------
s caeRem4.Crem_Contig24   440404 30 -  1162296 ACGGTCATCTCA--TACGCAACA-----AGT--GAA------TGC------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3452430 40 - 33334924 TCATCTATCTCATTTACGCAACA-----AATGGGAA------TGCTTCCCC
i caeSp111.Scaffold629  I 250 C 0
e caePb3.Scfld02_254      183209 920 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I

a score=36127.000000
s ce10.chrX               638883 193 + 17718866 TTCTTGCCA-----TATCAAATAACG--GTTGGATTGACTCTT---------------------GTTGTGTAATCAAAGAAGATGTACGACG-ACTAATGCGTTGATCCCT-------CCTCCCCTGCTCTTCCAAAATGTATTCATGACAATTCACGGCGTAACT--CGTGTTTGTATAACAAACGAAACTATGCAAACAATTGTAAGATT-GAAAAAAAATCAAAA---GAAA--
s caeRem4.Crem_Contig24   440434 224 -  1162296 -TTCTACCAACCAGTATCAAATAACAGGATGAGATTGACTCTTCCTCAAACCAACCAACTCTCCTCTATGTAATTAAAGAAGATGTACTACG-ACTAATGCGTTGATTCcc--cccttcttctcttcaccAGAC-AAATGTATTCATGACAATTCACGGTGTAACC--CGTGTTTGCACA-AAAACGAAACTACGCAAACAGtttgaacatg-aaaaagaagaggaaaa--gaga--
i caeRem4.Crem_Contig24 C 0 I 414
s caeSp111.Scaffold629   3452470 206 - 33334924 CTTCTAACA-----TATCGAATGACA----TAGATTGACTCTTcccc-ccccccTTAATGCT--TTTATTTAATGAAAGAAGATGTACTCCCAACTAATGCGTTGATTCCT-----------------CCATCCGAGATGTATTCATGACAATTCACGGTGTAACTGCTGTGTTTGCACA-AAAACGAAACTTGGCAAACAGATAGAACCTG-GAAAGGGAGTGGGTATAGGGGAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      184129 210 +   193288 TTCCTCGCA-----TATCGAATAACA----CAGATTGACT---------TCTCCTCAATGGTTCTCTATGTAATCAAAGAAGATGTACCCAC-ACTAATGCGTTGAttcctttcctttcttcaTTGACCTGTCCCTAATGTATTCATGACATTTCACGGGGTG-----TTTGTTTGCCTACAAAACGAAACTATGCAAACA-ATGAAACATGTAAAAAAGAGCGAGTAT--Ggaagt
i caePb3.Scfld02_254    I 920 C 0
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I

a score=83.000000
s ce10.chrX               639076 31 + 17718866 TTGTGTTTTCAATGTTTCATTTAATAAAAAT
s caeSp111.Scaffold629   3452676 21 - 33334924 ATGAGCTT----------Atctaataaaaat
i caeSp111.Scaffold629  C 0 I 192
s caePb3.Scfld02_254      184339 23 +   193288 ttcaattt--------tggctgaatgatgat
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeRem4.Crem_Contig24   440658 414 -  1162296 I

a score=571.000000
s ce10.chrX               639107 38 + 17718866 CTAA--CAAATTGATAAAT-----------AAAGTACCCATGTGATTTTCA
s caePb3.Scfld02_254      184362 51 +   193288 aaaatttgaattgacaggttttttttcgaaaaactattcaTGTAACTTTCA
i caePb3.Scfld02_254    C 0 I 314
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeSp111.Scaffold629   3452697 192 - 33334924 I
e caeRem4.Crem_Contig24   440658 414 -  1162296 I

a score=0.000000
s ce10.chrX               639145 1050 + 17718866  
e caePb3.Scfld02_254      184413  314 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389  837 - 21540570 I
e caeSp111.Scaffold629   3452697  192 - 33334924 I
e caeRem4.Crem_Contig24   440658  414 -  1162296 I

a score=450.000000
s ce10.chrX               640195 19 + 17718866 GCCGGAGAGATGAAGTATC
s caeSp111.Scaffold629   3452889 13 - 33334924 GCGGGAGAGa------atc
i caeSp111.Scaffold629  I 192 I 1
e caePb3.Scfld02_254      184413 314 +   193288 I
e caeJap4.Scaffold54      137269 2716 +   258924 I
e cb4.chrX              21125389 837 - 21540570 I
e caeRem4.Crem_Contig24   440658 414 -  1162296 I

a score=546.000000
s ce10.chrX               640214 1 + 17718866 A
s cb4.chrX              21126226 1 - 21540570 A
i cb4.chrX              I 837 C 0
s caeSp111.Scaffold629   3452903 1 - 33334924 a
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254      184727 1 +   193288 A
i caePb3.Scfld02_254    I 314 C 0
e caeJap4.Scaffold54      137269 2716 +   258924 I
e caeRem4.Crem_Contig24   440658 414 -  1162296 I

a score=27658.000000
s ce10.chrX               640215 53 + 17718866 ATAAACATAT-GTTGTGAAGATTATCGCTAGTCGGTTTCCCATTGACCCGCG------TG
s cb4.chrX              21126227 60 - 21540570 ATAAACATATAAATGTGGAGATTATCGCTCGTCGGTTTCCCATTGACCCTCATCATGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441072 53 -  1162296 ATAAATACAT-ATTGTGAAGATTATCGCTAGTCGGTTTCCCATTGACCCGCG------TG
i caeRem4.Crem_Contig24 I 414 C 0
s caeSp111.Scaffold629   3452904 58 - 33334924 ataaatatat-attgtGAAGATTATCGCTAGTCGGTTTCTCATTGACCCCCG-CGTGTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      184728 54 +   193288 ATAAATA------TGAGAAGATTATCGATTGTCGGTTTGTTATTGACTCCCGACGTGTGG
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      137269 2716 +   258924 I

a score=72200.000000
s ce10.chrX               640268 88 + 17718866 TTCAACA-AAGACAAGTGTC--TCGGTCCACAGTACT-TCGGCACATC-TTTAATCTTTTATTTGTCATGAGTGATATGACACTTGTATTAAT
s cb4.chrX              21126287 86 - 21540570 TTCGACA-AAGACAAGTATC--T--GTGTACAGTACT-TCGGCACATC-TTTAATCTTTTGTTTGTCATGAGTGATATGACACTTGTATTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441125 87 -  1162296 TTCGACA-AAGACAAGTACC--T--GTGTACAGTATT-TCGGCACATCGTTTAATCTTTTGTTTGTCATGAGTGATATGACACTTGTATTAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3452962 88 - 33334924 GACGACA-AAGACAAGTCCTCAT--GTGTACAATATT-TCGGCACATC-TTTAATCTTTTGTTTGTCTTGAGTGATATGACACTTGTATTAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      184782 85 +   193288 GACA--A-AGGATGAGTATC--T--GTGTATAGTGTTATCGGCATATC-TTTAATCTTGTGTTTGTCGTCAGTGATATGACACTTGTATTAAT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      139985 87 +   258924 TTCAGCAGAAGATGTGTATA--T--GTTTACATATCA-TCGGCAATCC-TTTAATCTTTTGTTTGACATAAGTGATGCGACACTTATACCAAT
i caeJap4.Scaffold54    I 2716 I 783

a score=13947.000000
s ce10.chrX               640356 39 + 17718866 AATG-TATACGAA--ACAACTACCCGCAATC----TGTTTGCTACC
s cb4.chrX              21126373 43 - 21540570 -ATCGTATAGGAA--ACATTTACCCGCATTTTTCGTATTTGCTACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441212 40 -  1162296 -ATC-TATACGAA--ACAACTACCCGCACACTT--TATTTGCTGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3453050 35 - 33334924 -ATG-TATACGAAATACAACTACCCGC---------ATTTGCTACC
i caeSp111.Scaffold629  C 0 I 46
s caePb3.Scfld02_254      184867 36 +   193288 -ATG-TAAACGAA--ACAACTTCCCTCAT------TATTTGCTACC
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      140072 783 +   258924 I

a score=-1658.000000
s ce10.chrX               640395 14 + 17718866 ---AGCCATTTGGT--TTT-
s cb4.chrX              21126416 11 - 21540570 GC--GCCAC-------CTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441252 20 -  1162296 ACCAACCACTTGGTGGCTTC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      184903 14 +   193288 ---AGCCACCGGGT--TTT-
i caePb3.Scfld02_254    C 0 I 560
e caeJap4.Scaffold54      140072 783 +   258924 I
e caeSp111.Scaffold629   3453085 46 - 33334924 I

a score=-4217.000000
s ce10.chrX               640409 108 + 17718866 AGCAAGGTGGAAATTGAAGGCTGAATGGGCGAAAGGTGCATTCCA-----AATTGCATGAAAATTTTAGACTAGAATTATGTAAGCGATATTGTAAAAAAATTACTTTATACA
s cb4.chrX              21126427  74 - 21540570 ATGAAGGTGG------------GGGTGGGAGGGG-------TTGGTTGTTCATAAAGTAATGTCttaaaattag--------------------caaaaaatcaatttattcA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441272  50 -  1162296 CTGTAGGTGGAA----------AAATGGCGgaaa-------tcga-----aatgaaatgatgaCT-----------------------------------ATCA--TTA----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I
e caeSp111.Scaffold629   3453085  46 - 33334924 I

a score=-3338.000000
s ce10.chrX               640517 155 + 17718866 ACGTGCTCTTGTAGTTTTTGCTTCAAAAATTCAGCTTTGACTTTTGAAAGTTTTTGAAAAAAAATTCAAATTTTCATGTGAAACCTTTTAAACCTGTCGTTAAATATTCCGAGAAAGAGTTTTCAAAAGGTTTTTTTTGTAAAATGGAAAAAAAA
s caeRem4.Crem_Contig24   441322  33 -  1162296 -------------------------------------------------------GGAAGGAAA---------------GAAAC------------------------------------------GGGACTTTGATTATAAAAC----------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I
e cb4.chrX              21126501   0 - 21540570 C
e caeSp111.Scaffold629   3453085  46 - 33334924 I

a score=-8187.000000
s ce10.chrX               640672 175 + 17718866 GAAACTGAaaattaatcagaaatttatcagaatttatcagaaatCAGaatatatatataaatattttttaaattGTTATGTAAGACACATATCACTTGTTTTCTTTTAATTTTCAAATTGCCATTTATTGCAAAAAAATATTTATACAGAATATACGATTTACTCAATAGTCATT
s cb4.chrX              21126501  64 - 21540570 ---------GAT--ACCGAACACTG--------------GAAATAAAAGTACA-ACATAG-------TTCAATTTTTATGCA-----------ACTTT-------------------------------------------TCATAGATG------------------------C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441355  64 -  1162296 ---------AATTAACCGGAACCTT--------------Caaac-----------cagaa-------ttttttcattataga-----------actgg-----------------------------------aaaaatgattatAATTG------------------------C
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I
e caeSp111.Scaffold629   3453085  46 - 33334924 I

a score=57361.000000
s ce10.chrX               640847 606 + 17718866  
s cb4.chrX              21126565 451 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441419 510 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold629   3453131 484 - 33334924  
i caeSp111.Scaffold629  I 46 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I

a score=-3139.000000
s ce10.chrX               641453 106 + 17718866 TTTTCTGGTCTGGTTTTGATTATGTTTTCAGTAAACTTTTATGTCAAATTTTTGTGAAAACTCACGGGAAAAGGAATTTTGTTCATAGTTGGACATAGGAATGAAA
s cb4.chrX              21127016  52 - 21540570 ---------------------------------AACTGCT--------------CGAAAACTTACTGGAAAGTCGATGGTGCCCAT------TTGTATGATGTAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3453615  48 - 33334924 -------------------------------------------------------aaaaactaaccGGGAAGTTGATGAAACCCATG--TTgttattcgaataaa-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I
e caeRem4.Crem_Contig24   441929  25 -  1162296 I

a score=169.000000
s ce10.chrX               641559 111 + 17718866 AATGAAATGTCTTATCTTACCTACTTTCAATAAATAT-------GGAGTTCCTGTT----TTGATATTTTGAATGCAATAACAAACA----AACAAGCACTACCAGGCAGA------GATGAAACCATCAAC---
s cb4.chrX              21127068 129 - 21540570 AATGACTGTACCTGTTTTCTTTA---TCTATGAACAccatgttttttgtttttgttttatttgttGGTGAGCGTTCAAATAAAAACATGCCCCCCAGCACTGCCTGTCTGTCATCACCGGAAGACGATGAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   441954 105 -  1162296 ACTGACACTTCTTATCTTC--------CAATAAGtac--------------ttgtt---tttgttgttgagtaaacaaacaaaaaca--acactAGGCAGTACCAGTCTATCATATAGATGAGTCTATAAAG---
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold629   3453663 114 - 33334924 aatgactgttcttttttatctta----ccataaatat----atttttattttcactcACCTGAATGTAATATgaacaaacaaaaaca---aaacaagcaCTACCAGTCTGT----------AGAAGATAGGGTCA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      184917 560 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I

a score=17825.000000
s ce10.chrX               641670 43 + 17718866 ---------------ATTAGA-------AGTTTGATTGAGTGCACCCTTAATGTCATCTTAACGC
s cb4.chrX              21127197 60 - 21540570 TTTGGAAGAAGTACAAACACACC-----AATTTGATGGAGAACACACTTAATGTCATCTTAACGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442059 60 -  1162296 TTC-----ACTTACAAACAAACCCCTAAAATTTGATGGAGGACGCTCTTAATGTCATCTTAACGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3453777 42 - 33334924 --------------TAACA---------AATTTGATTGAGTAGTCTCTTAATGTCATCTTAACGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      185477 43 +   193288 -------------ATAATA---------AGTTTGATAGAGTGTGCACTTGATGTCATCTTAACGC
i caePb3.Scfld02_254    I 560 I 266
e caeJap4.Scaffold54      140072 783 +   258924 I

a score=-42167.000000
s ce10.chrX               641713 429 + 17718866 ATACTTGTAACCG---ATTAGAGTCATCT-TGAATAAATATTGCAATGAGTCTTGAAGAAGAAATTAGTGTATTAAGCTGTACTATTTTTTGTGCAGGGAGTTTTGAAGAAATTAAGCAAAAATAATTCTGGGGTCTGACTTCAATGCCTAATTACAAGTACATAGGTTACATAACACTTACGTTGTTGGAAAGTT----TTGAAAAATCGCAAAACCTAGGCAGAGAATAAATTTTAAAAATTTGTAAAAATGTTTCTTATCAATTTCCAAAATGATCCAAAATTGAATGGCAAAAACTGACATATTTCTATTTTTTGAAAGTAAATTTGAAAAATTCGAAAAAG--ATTCCTAGTTAACTGATATAGTTTGTTCCGCTCAATTCGTCCAAATTTGAATGGCA-----------AATGTTACAATTTTTTCCAA---CTTCGTAAAACGAAA
s cb4.chrX              21127257 230 - 21540570 ATTGAGTTCCTGACAATTCGAGA-GCTAT-TAAACAAATACTT----------------AAGAGCC------------------ATCTTT--------------------------GAGAAAACGATACTTTGT---------GATGATGTAAATAAAttaga---------------------agtttggaaattaacgttgagag-------------gaaaaaaaata-----------------------------------------------------------gacagggggaaacagttttttgttttcagtaaCCAATTATGTAAGTCAAGAataat--gtttttatttt---------------------caagtgg--caaattcgaatttaa-----------------aaaaattcgtcGGC-----------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442119 198 -  1162296 ATCGATGTAATGA-------------TAT-TGTGCAAATACTT----------------AGAAGTCACT-----------TGGTATCGTT--------------------------TAGAA--------CTGCT---------AATGATGGATACAAAT--------------------------GTGTGGATACT----TTGGGAGAACC---------GAAAGGGATTA-----------------------------------------------------------AGGAAGAATTAACAGTTTTT--------GTAAGAAAATA-----------AATAGCTAGTAATGatatt---------------------------------attaaaatttcattcgcaatcaaa----tataaatttatttat-----------------t
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3453819 238 - 33334924 GTCGATGTAACGG---TTTAAGAGGCGATATGGGTAAATACTT----------------GGGAA--------------------GTCGTT----------------------TTGAGAGGAAGTGGTACTATGTT---ACTCAGATGTTGAAATAATATCAGA------ATACGGCTGTCACG-AATGAGGAGATA----TTGGGAAAACC-----TTTGGAAAAATAGca------------------------------------------------------------------------agtttttgagttttgatttcagattt-------------caac--attctgaaaag---------------------------------atgtcaatttca-----------a----aacaaatttatcAGCAAATATTatcgaaaaagg
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      185520 266 +   193288 I
e caeJap4.Scaffold54      140072 783 +   258924 I

a score=2016.000000
s ce10.chrX               642142 5 + 17718866 AAAAA
s cb4.chrX              21127487 5 - 21540570 GGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442317 5 -  1162296 tcaaa
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold629   3454057 5 - 33334924 agaaa
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold54      140855 5 +   258924 aaaaa
i caeJap4.Scaffold54    I 783 C 0
e caePb3.Scfld02_254      185520 266 +   193288 I

a score=151254.000000
s ce10.chrX               642147 739 + 17718866  
s cb4.chrX              21127492 593 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442326 607 -  1162296  
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold629   3454064 514 - 33334924  
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_254      185786 820 +   193288  
i caePb3.Scfld02_254    I 266 C 0
s caeJap4.Scaffold54      140860 635 +   258924  
i caeJap4.Scaffold54    C 0 I 206

a score=-263.000000
s ce10.chrX               642886 31 + 17718866 GGTTATCAAAGACGATACTGA------------------------AACCAAATGT
s cb4.chrX              21128085 21 - 21540570 AGATACGAGGGACGATACTGA----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442933 45 -  1162296 GGAGATGAGAGACGCTACTGATGATCTGGTTTCTGCAAAAAacgt----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3454578 23 - 33334924 GGAAATCAAGgaggaaactga------------------------aa--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      186606 31 +   193288 AGAGATTAGCGATGCCACTGA------------------------ACCAGTATGT
i caePb3.Scfld02_254    C 0 I 705
e caeJap4.Scaffold54      141495 206 +   258924 I

a score=-3016.000000
s ce10.chrX               642917 23 + 17718866 TGATATTGAAATTGAATTGTGGG---
s cb4.chrX              21128106 18 - 21540570 --------AAGGGGTTGTTTTATACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   442978 26 -  1162296 tgaaactgaaaatattttcttgtaAG
i caeRem4.Crem_Contig24 C 0 I 211
s caeSp111.Scaffold629   3454601 12 - 33334924 ------ttaaactatttt--------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I

a score=-1991.000000
s ce10.chrX               642940 35 + 17718866 TTTAGTTTTCTTAGCGATGAGTGAGCGCAATATTT---
s cb4.chrX              21128124 34 - 21540570 -TTGAATTTCTTCAGATAAAATCAGGAAAGTAACT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3454613 28 - 33334924 catggtttttttACTAC----------ACGTAATGCTT
i caeSp111.Scaffold629  C 0 I 211
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I
e caeRem4.Crem_Contig24   443004 211 -  1162296 I

a score=-734.000000
s ce10.chrX               642975 34 + 17718866 TTACGATTAGAACGACCTGGGAGCTCAGGGGGTC
s cb4.chrX              21128158 28 - 21540570 ttaccaaaaaattattttcgcaTATCTG------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I
e caeSp111.Scaffold629   3454641 211 - 33334924 I
e caeRem4.Crem_Contig24   443004 211 -  1162296 I

a score=-5889.000000
s ce10.chrX               643009 126 + 17718866 CGGAGCAGGATGGAAAAACCCCGTTTTTTTGAGCTACGAAA-CTTAAAAAATGAAA---ATCG---------TCTGTCTGTCT--GAATGTGTACAACCCAAAC----------------------------------TTTTAAAATTCAGT--TTTCAATTTTTATAATACCCCCC
s cb4.chrX              21128186  91 - 21540570 --------------------CTgtttggtcgttttataggt-tttataaattttga---attt---------tttggacgttttggattgtgtg--------------------------------------------ttacaaaacttttt--gctgatttctaTTTAT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   443215 177 -  1162296 cgaaataggaaaataagtcactgttatctttttttttaactatccAGAAAAATAGAGACATTTACCCGAAAATTCAGTTGTTTAACATAGTGTGCTTTCCATCtctaaaaagttcaaaaaattagtacaccataataatttcaaaatttttttggcagaaatttACTAGTACctgct
i caeRem4.Crem_Contig24 I 211 I 119
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I
e caeSp111.Scaffold629   3454641 211 - 33334924 I

a score=-687.000000
s ce10.chrX               643135 73 + 17718866 AGGCAAGCACTCGGTATTAGGGAAACATGGGAATATTGATATTGGGGTGGATGACAATTTTTCTGTATGTTTC
s cb4.chrX              21128277 42 - 21540570 ------GCAC---gtatttcgaaaa------------------agaatgGTTTATA-TTCCTCCACAT---TC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I
e caeSp111.Scaffold629   3454641 211 - 33334924 I
e caeRem4.Crem_Contig24   443392 119 -  1162296 I

a score=-418.000000
s ce10.chrX               643208 38 + 17718866 TCTGTTGATACTTG--TGTACGTTTTTCAGTAGTTTCCAA
s cb4.chrX              21128319 23 - 21540570 TTTGCTGA---TTA--TTTGCTGTATTA------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   443511 37 -  1162296 TTTGTTGA---ATAACTTCACctttttaaacagtttttga
i caeRem4.Crem_Contig24 I 119 C 0
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I
e caeSp111.Scaffold629   3454641 211 - 33334924 I

a score=-6113.000000
s ce10.chrX               643246 21 + 17718866 -----------------------------AGTTCCAATTGCAT-GCGCAGC
s cb4.chrX              21128342 13 - 21540570 -------------------------------------TTAAAAACAGCAG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   443548 50 -  1162296 accCATCGTTCTTAGATTAACTCATCACACCCTTTCGTTGTAATTTGCGG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3454852 14 - 33334924 -----------------------------attttccattgcAA--------
i caeSp111.Scaffold629  I 211 C 0
e caePb3.Scfld02_254      186637 705 +   193288 I
e caeJap4.Scaffold54      141495 206 +   258924 I

a score=58343.000000
s ce10.chrX               643267 275 + 17718866 ATCTTGAT---TAGCAGCAGAATTTATTTACTTTC---------ATACAAAATAAAAACTTTCAGAGATAGAATAGAGATTTACAA--TCAAACGAGCGGAATA-----------AACATTGAAAGAGACAAGGAAAGCGTC--GACGACTAAATGTAAAC-----------ATTATG--AGAAACTCAGGCATACAGTCTGCT--ATCACCGTTTCAGGTTATTTGGTGTCGAAAAAACCGTA--AACCGGCTCATTTGGTATTGCATGGGACAACACTTT----AATTAGCAGA-----------GACA--------------------GAGGAG------G-CATGC-------AGGGGG----AAAAG
s cb4.chrX              21128355 309 - 21540570 ATCTTGAT---TAGTAGC-TCATTTATTTAC-------------TTCAAAAGGAAACA-----------TTTAGAGAAATTTACAA--TAAAACGAgcggaaaaatgaaacaaatgaCAAGGACAG---------AAGCATC--GACGACT--ATGTGAAA-ATATGTGACTGAAACG--GAAG----AGACATACG-TCCGCT--ATCACCGTCTCTGGTTATTTGGTGTCGAAAAAACCGAGGAAAACGGATAATTTGGTATTGCATGGGACAACACTTA-TTTGGCTGGCAGACG---------AATGAGAGCATTCTGGGTTGATTTGGGGAGGTATTTGTCATATTGCTTGGTAGggtacgaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   443598 270 -  1162296 ATCTTGAT---TAGCAGC-GTATTTATTtac-------------ttgaaaagaaaaga-------agagagaagagagatttACAA--TCAAACGAGCGGATAA-----------TACAGTGACA----------AAGCATCATGACGACTAAATGTGGAATAAACTTTAATATAAAGACGAAG----AGGTATACA-TCCGCTAAATCACCGTTTCCGGTTATTTGGTGTCGAAAAAACCGTGG-AACCGGCTAATTTGGTATTGCATGAAACAACACTTGTTTTGACTAGCAGACG--------TAATG--------------------GGGGAG------GACATA--------CAGGGT-------GA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3454866 272 - 33334924 ATCTTGAT---CAGCAGCAGTGTTTATt--------gtcat---ttgaaaaagataca------gagagaaaaatgagatttacAATTAAAAACGAGCGGAATAA----------AACAGTGACAGA------CAAAGCATC--AACGACT--ATATaaaa-------aaaGTGCATG--G-GG----GAGCCAACA-TCCGCT--ATCACCGTTTCCGGTTATTTGGTGTCGAAAAAACCGTCG-AACCGGCTATTTTGGTATTGCATGAAACAACACTTT--TTGACTAGcagatgatgaaaaaaaagg--------------------gagaag------GGCATGC-------TGGGGT-------AG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      187342 273 +   193288 ATCTTGATTAGTAGCAGCAGCGTTTATTTACTTGACGTAATATATTGAGAAAGGGGGACGT---GACAGATAAATGTAATTCA-----ACAACCGAGAGGAATAG----------AACAATGACAGA------CAAAGCAGT--GTTG-------ATAAAA-------TAATAGCTTG--GAGA----AAGCCCACA-TCCGCT--ATCACCGTTTCTGGTTATTTGGTGTAGAAAAAACCGT---AAACTGTCACCTTGGTGTTGCATGAAACAACACTTT-GTTGACTAGCAGATG------GAAAAAA--------------------GGGTAA------GTCATGC-------ATGGTT-------GT
i caePb3.Scfld02_254    I 705 C 0
e caeJap4.Scaffold54      141495 206 +   258924 I

a score=22362.000000
s ce10.chrX               643542  99 + 17718866 TCATTTCTGCTAACTAATCAAGATCTGCTCGAGAATGAAAGTAAGACACGGGATACATTGGAA-------------------CGGCAACAAGT-----TGTG-----AAGG----------GGGGAAA---AGTG------------AAGAAG
s cb4.chrX              21128664 134 - 21540570 aaacttctgatccCTAATCAAGATCTGCTCGAAAACGAAAGTTAGACACGGGATaaagggagagagaaagagagtggAAGGAAGGCAACAA-------tgtg-----aacatttt-tgaaagggTAA--AAAGTG----AAGTTTAGTGGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   443868 132 -  1162296 TCATTTCTGCTAACTAATCAAGATCTGCTCAAGAATGAAAGTAAGACACGGGATATTGGGGGA--------------AGAGAAGGCAACAA-------TGTGTGTGAAACGTTTTGTaaaaggggaaagaaagtgatgaaaacgaaagggaag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3455138 113 - 33334924 TCATTTCTGCTAACTAATCAAGATCTGCTCAAGAATGAAAGTAAGACACGGGATAGGGGGGCG--------------AAATAGGGCAACAA-TGTTTGTGTG-----AACAGTTG------GGGGAAAGAGAATG--------------GAAG
i caeSp111.Scaffold629  C 0 I 31
s caePb3.Scfld02_254      187615  96 +   193288 CAGTTTTTGCTAACTAATCAAGATCTgctttagaa-aaaagtaagacA--GAAAGATGGGAAA--------------GAGGAGGGCA--AA-T-----TGTG-----AACAGTTA------CAGGAAA---AGTG------------------
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      141701  71 +   258924 TCATATCTGCTAACTAACCAAGATCTGCTCAAGAGTAAAAGTATTATACAAGACAA--GACAA--------------ACAATGGACA------------------------------------------------------------------
i caeJap4.Scaffold54    I 206 C 0

a score=-10110.000000
s ce10.chrX               643641 35 + 17718866 ATGTGATTAAACATT---GAACATTAAG--AAAGAGCATC
s cb4.chrX              21128798 36 - 21540570 ----AGTAGAATAATTTTAAGCAAGAAGACAAggaaaatt
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig24   444000 30 -  1162296 ----gggagaaaaat-----ggaagaag-caagaaacatg
i caeRem4.Crem_Contig24 C 0 I 44
s caePb3.Scfld02_254      187711 29 +   193288 ---TGATAAGACATT-----ACGTAAAA-CGTAGAATA--
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      141772  9 +   258924 ATTTGATTA-------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3455251 31 - 33334924 I

a score=318566.000000
s ce10.chrX               643676 588 + 17718866  
s cb4.chrX              21128868 577 - 21540570  
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig24   444074 559 -  1162296  
i caeRem4.Crem_Contig24 I 44 C 0
s caeSp111.Scaffold629   3455282 557 - 33334924  
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_254      187740 534 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      141781 550 +   258924  
i caeJap4.Scaffold54    C 0 I 30

a score=-10755.000000
s ce10.chrX               644264 29 + 17718866 TTCATAAATATTCACAACCGTCGGAAGGC
s cb4.chrX              21129445 23 - 21540570 aacataCT----TTTGAC--TTCTAACGc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   444633 27 -  1162296 attataataaaatatAAT--CTGCATGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3455839 11 - 33334924 aa------------------tcgCCAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      188274 23 +   193288 TAATTATG----Cttttt--ttGCCTTCA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      142331 30 +   258924 I

a score=131780.000000
s ce10.chrX               644293 198 + 17718866 CTAGAAA---------------------AACTCACTCTTCCTTCAACCTCGGCAAGTCTGCTTCGGACATTTGTCACGGTCGTGCGGATGGAGATGAGTTCTTCCTTGTAGAGGTC--TGGGTTGACG-CGAACTGATTCGTCCTGAATCTTTCTGATTTGCTCACGGTACCACAC-TTCAATGTCTTGACGGTTGCGGATGCTGATCTAAAAA----AAATATCAT
s cb4.chrX              21129468 207 - 21540570 cgagaat--------------tttttcaaactcactcTTCCTTCAACTTCTGCGAGTCTGCTCTTCACGTTTGTCACCGTTGTGCGAATTGAAGCAAGCTCTTCCTTGTAGAGATC--CTGGTTGACT-GGTTTGGATTCAGTCTGAATCTTTCTGATTTGCTCACGGTACCAGAC-TTCAATGTCGTTGCGGTTGCGGATgctgatctgaaaa--tttaaaatcgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   444660 202 -  1162296 TCGGAAT--------------TT-----AGCTTACTCTTCCTTCAACTTCAGCGAGTCTGCTCTTCACACTTGTCACCGTTGAGCGGATAGACGCCAACTCCTCCTTGTAAAGGTC--TGGGTTGACA-CGAGTAGACTCGCTCTGGATCTTTCTGATCTGTTCACGGTACCAGAC-TTCGATGTCGTTGCGATTGCGGATGCTGatcttaaaa--aatcaaaacat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3455850 216 - 33334924 TAAGAAAGCCAGAGTTCTCGATT-----CACTTACTCTTCCTTCAACTTCAGCCAATCTGCTCTTGACACTAGTCACCGTTGAGCGGATTGAAGCGAGCTCTTCCTTGTAGAGATC--TGGAGTGACA-CGAGTGGCTTCACTCTGGATCTTTCTGATCTGCTCGCGGTACCACAC-TTCGATGTCGTTGCGATTTCGAATGCTGATCTGTAAT--TTGGGAATTAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      188297 203 +   193288 AAAGGAA---------------------TACTCACTCTTCCTTCAACTTCGGCAAGTCTGCTCTTAACATTAGTCACAGTGGTTCGAATGGATGACAGCTCCTCCTTGTAAAGATC--TGGATTAACA-CGAGTAGATTCTGACTGAATCTTTCTTATTTGCTCGCGATACCAGACTTTCAATGTCATTGCGGTTACGAACGCTGATCTGCAACAAACAGAAGTGGA
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      142361 201 +   258924 ----------------CACATAT-----TACTTACTCTACTCTCTACTTCAGCAAGTCTGCTCTTAACTCCTAGAACAGTTTTGCGAATTGAATCAAGTTCAGTCTTGTAAAGGTCAATGGACGGATGTTTAGCTGCGTCTTCCTTGATTTTCACAATTTGTTCGCGATACCAGAT-TTCGATATCATTGCGATTGCGAATACTGATCTATAAA----AAACAACAT
i caeJap4.Scaffold54    I 30 I 511

a score=-7770.000000
s ce10.chrX               644491 32 + 17718866 GT-GAATTGTTATAT----CTTACTATTTTAATGTCT
s cb4.chrX              21129675 28 - 21540570 TGAACAGAATCACGA----CTCAAAA-----AAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   444862 32 -  1162296 tt-atgAAATAACAT----CTGAGGATTCTGAGGACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3456066 25 - 33334924 TA-ACAAAATAGTTGTTATTTT-----------GGCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      188500 21 +   193288 TT-ACATAACTAGGG----CTT-----------GACT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      142562 511 +   258924 I

a score=456598.000000
s ce10.chrX               644523 506 + 17718866  
s cb4.chrX              21129703 506 - 21540570  
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24   444894 506 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3456091 504 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      188521 506 +   193288  
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      143073 560 +   258924  
i caeJap4.Scaffold54    I 511 C 0

a score=-8284.000000
s ce10.chrX               645029 21 + 17718866 AAA---------------------ACCATTATCAGTTTTCCA
s caeRem4.Crem_Contig24   445400 41 -  1162296 aaaaattatgttatcATCAGTGTTgccattttttgctttta-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3456595  7 - 33334924 ----------------------------ttttttg-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      189027 18 +   193288 ------------------------aaccttatcAGTTAATCA
i caePb3.Scfld02_254    C 0 I 75
s caeJap4.Scaffold54      143633 18 +   258924 -------------------GAGACGTTTTTATCAGTA-----
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21130209 11 - 21540570 I

a score=-1578.000000
s ce10.chrX               645050 13 + 17718866 ----------TCGCGACTTCTTA
s caeRem4.Crem_Contig24   445441 13 -  1162296 ----------tcatcatttctca
i caeRem4.Crem_Contig24 C 0 I 20
s caeSp111.Scaffold629   3456602 10 - 33334924 -------------tcaattgtTA
i caeSp111.Scaffold629  C 0 I 14
s caeJap4.Scaffold54      143651 21 +   258924 TCGTTAAAcgttgacattttt--
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      189045 75 +   193288 I
e cb4.chrX              21130209 11 - 21540570 I

a score=-11982.000000
s ce10.chrX               645063 36 + 17718866 TCAAGTGTGCT----------------TGAAGAGAGAGAGAAAAAATGAAGT-
s cb4.chrX              21130220 22 - 21540570 TCTAGTCTGCT----------------CTATTA----------TTATG-----
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig24   445474 33 -  1162296 ATTGGTTTGTTGATTCAC---------TTTTGA----------ATATGCAAT-
i caeRem4.Crem_Contig24 I 20 I 7
s caeSp111.Scaffold629   3456626 51 - 33334924 GTCGGTGTGACAAGACAAAAGTTGAAGTGATAAGATA-ACAAGACATGCAAC-
i caeSp111.Scaffold629  I 14 I 9
s caeJap4.Scaffold54      143672 36 +   258924 ttttgttcagt----------------ttaaaacaaacaaaa-atgggtgatt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_254      189045 75 +   193288 I

a score=74523.000000
s ce10.chrX               645099 211 + 17718866 ----------AAA--CTCACGTTGATCTCAGCGTCAAAGAGTCCAGATACATGACCTCCACCGCTGAATCCGTTGCGAAGAATATCAATATCGTGGCTGAGGCATCGGTTTTGAGCTTCCAGAAAACGAACCTGCAA---TTGAA-----ACTTTTAGAACACATGTACACTCAaaacaacatcagccgaagacatctcacgggttttgaactccacttttttcaacgtga
s cb4.chrX              21130242 153 - 21540570 ---------------CTTACCGCAATTTCGGTATCATAGAGTCCTGAAACGTGGCCGCCTCCACTGAATCCACGGCGAAGGATGTCAATGTCGTGGCTGAGACATTGATTTTGAGCTTCAAGGAAACGGACCTAAAC--TTTCAA-----ACTTGTAGCAC-------TTTTT---------------------------CTGACTTCA----------------------
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig24   445514 146 -  1162296 ----------AAA--CTCACGGCAATTTCAGTGTCGTAGAGTCCAGACACATGACCGCCTCCACTGAATCCTCGGCGGAGAATGTCGATGTCGTGGCTCAGGCATTGGTTTTGAGCTTCAAGGAATCGGAcctagaa----aaaa-----atatatatca----------------------------------------ttgaatt------------------------
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3456686 159 - 33334924 ----------AAA--CTCACAGCAATTTCAGCATTGAAAAGTCCAGAAATGTGGCCATCTCCACTGAATCCACGACGGAGAATGTCAATGTCATGGCTGAGACATTGATTTTGAGCTTCGAGGAAACGAacctaaaaaatttcca-----actCCAAGAAA-------CCCTT---------------------------CGGTTTT---------------TCC------
i caeSp111.Scaffold629  I 9 C 0
s caePb3.Scfld02_254      189120 186 +   193288 ----------AAA--CTTACAGCAATTTCAGTGTCAAAAAGTCCCGAAACATGACCACCACCACTGAATCCACGACGAAGAATGTCGATATCATGACTGAGGCATTGATTTTGAGCTTCAAGGAAACGGACCTGAAATATTCTTATTGTTACTTTAAAAAT-------Gacctgaaaaagca------aaagaaa----accGTTTT---------------TCACTGTA-
i caePb3.Scfld02_254    I 75 C 0
s caeJap4.Scaffold54      143708 153 +   258924 aaaaactttaaaattcttaCAGCGATTTCGCTATCATATAGACGAGACACATGACCGCCTCCGCTAAATCCACGACGAAGAATGTCAATGTCATGACTCAAACACTGATTCTGAGCTTCAAGGAAACGGACCTATAA----TTAA-TGT-ATGTCCGAA------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0

a score=-1438.000000
s ce10.chrX               645310 19 + 17718866 cagcgcaccagccgatcat
s caeRem4.Crem_Contig24   445660  5 -  1162296 --------------ttaac
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      189306 13 +   193288 TAG------AATCAATTAC
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      143861 10 +   258924 ---------AGTTGTTCAT
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21130395 31 - 21540570 I
e caeSp111.Scaffold629   3456845  0 - 33334924 C

a score=-7741.000000
s ce10.chrX               645329 114 + 17718866 cggctttccttgctaagagcgttacgttgaatatagtgaggcgcagaacttgtgagatgtcggcagatgatgttggttgaggccccaatttCAAGGCGGGGCCTAAAATTTGGG
s caeRem4.Crem_Contig24   445665  41 -  1162296 agtttct-at-----------tcac------------------------------aatttcaataaataaggtt-----------------------------taaaaacta--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      189319  25 +   193288 AATTTCTCAT-----------------------------------------------Tatccgcaaa-------------------------------------aaaaa-----
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      143871   0 +   258924 C
e cb4.chrX              21130395  31 - 21540570 I
e caeSp111.Scaffold629   3456845   0 - 33334924 C

a score=-118.000000
s ce10.chrX               645443 4 + 17718866 CTCA
s cb4.chrX              21130426 2 - 21540570 --ca
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig24   445706 3 -  1162296 -tta
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      189344 0 +   193288 C
e caeJap4.Scaffold54      143871 0 +   258924 C
e caeSp111.Scaffold629   3456845 0 - 33334924 C

a score=-5256.000000
s ce10.chrX               645447 17 + 17718866 AAATACTTGTAGTCACG--
s cb4.chrX              21130428  9 - 21540570 aaaaa--------tact--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   445709 14 -  1162296 aaata---aCATCCACC--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      189344  7 +   193288 ----------agtagct--
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      143871  9 +   258924 ----------AAACACGCA
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3456845  0 - 33334924 C

a score=192056.000000
s ce10.chrX               645464 291 + 17718866 TACCTTCTCAATGTAATCCGCGAGACGATCGTTCAAGAGACCAATTTCTCTCTTCTCACGTTCACGCGCGTCACGGATTTGGGTTGTGCAGATGGCTCCAGCAGATGACATTCCACTGACAAG---CTGGCCAA------AGCCAGAAGCATAT---GTTCCACTGGCAAGTCCACGACCTTGATAAGTAGA------AGTAGTATAGG---CCGCGTAAGTCGACATTTTTTGGTTTTTTTTTGTCGATTTTAGAAGTTAAT-AATGATAAAAAATGAGAAAATGGCAC-----TGATTAGACAATGTTTTATAG---GC
s cb4.chrX              21130437 292 - 21540570 tACTTTCTCAATGTAATCGGCTAGACGGTCATTCAAAAGTCcgatttctctcttttcacgCTCACGAGCATCACGAATTTGTGTGGTGCAGATGGCTCCAGCAGAGGACATTCCAGATACCAA---ACCTCCGA------ATCCAGAAGTGTAG---GCTCCGCTTGCAAGTCCTCGACCTTGAGATGTAGA------TGTATAGTGGGTGTAACCGTAGGTTgacatttt-tg--ctcttttcttctAGTTCAGGAGTAGAataatgacaaaaaatgagagtGTTTCAC-----TGATTAGGAGCTATTTTATAG---GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   445723 296 -  1162296 AACCTTCTCAATATAATCGGCAAGACGATCGTTCAAGAGTCCGATCTCTCTCTTCTCACGCTCACGAGCATCACGAATTTGAGTGGTGCAAATTGCTCCAGCTGATGACATTCCACTGACCAA---TCCACCAA------ATCCGGATGTGTAAGCTGCTCCACTCGCAAGCCCACGACCTTGAGAAGTGGA------AGTAATATGGGTGTAACCGTAGGTTGacattttctg--cttttttcggctttttcagaagtagaataatgacaaaaaatgggaaagtgACAC-----TGATTAGGAGTCGTTTTATAT---GC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3456845 289 - 33334924 CACCTTTTCAATATAATCGGCCAGACGATCGTTCAAAAGTCcaatctctctcttctctctttcacgAGCATCACGAATTTGAGTGGTGCAAATGGCTCCGGCTGATGACATCCCGGAGACGAGGCCACCTCCGA------AACCAGAAGCGAAG---GCTCCGCTGGCAAGGCCGCGACCTTGAGAAGTAGA---AGTAGTAACTTGGG---AATAATAGGTTGACATTTTCAG--TGCTT--CACTCTTGGCGAataatgac-----aaaaaaaatgagagagtgGCAC-----TGATTAGCGGGTATTTTATAG---GC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      189351 294 +   193288 tACCTTCTCAATATAATCGGCAAGACGATCGTTCAAAAGTccgatttctcttttctcacgTTCACGAGCATCACGAATTTGAGTGGTGCAAATTGCTCCGGCTGATGATATTCCACTGACCAATCCACCTCCAA------ATCCAGAAGTATAA---GCTCCACTAGCGAAGCCTCGACCTTGAGATGTAGA------TGTTACATGGT---ATCCGTAAGTTGacatttttgg--ctctttccacttttttcagaaaatgga--atgacaaaaaatgaaaaagaagcac-----TGATTAGGTAGTGTTTTATAGAGAGT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      143880 293 +   258924 TACCTTCTCAATATAATCAGCAAGACGGTCGTTCAACGTTCCAATCTCTCTTTTCTCGCGCTCACGTGCATCACGGATTTGTGCAGTGCAAATTGCTCCAGCGGATGACATTCCGCTGACCAAATTTCCACTGATAAAGCCACCAGTAGCATAA---GCTCCGCT---GTATCCACGACCTTGAGAAGTGGAATAATGGGTAGTGTTTGAAATACTGATCGCTGACATTTTTTA-----------------GCGGCaaaaaaaTGctgataaaaaatgaaatggcaTCACAGACTTGATTAACTA--AATTTATAA---GC
i caeJap4.Scaffold54    C 0 I 1064

a score=-41841.000000
s ce10.chrX               645755 235 + 17718866 AAC--------CCTTGCGACTCCACCTATGCCTTCAACA----TAATGCCAACTGTAATCAGT-TTGGCGCTGGTCGCTGTGTTTCTCCGTTTCTCACTG-TCATCATATCA---------------AAATTCCAAGCTGTTTCATTTAGAGTTGAAAATGTCAAAAAAAAGAAAAAAGATTATGCTGTTAAAATTGGAGAAA-------AGAACGTCG-------AAAGTGTAAAGAAA-----------------CTATCCGTGACTAGACTAAGAAGTATTAACAGTTT-AAA------------------------------------------------------------------------
s cb4.chrX              21130729 167 - 21540570 ACAACCGCAACTTTTGTGTCTCCACCT----CTTGATAA----TAATGCCAATTTCGATCAGT-TTGACGCGG------gcgctttt----ttctttctt-tttttctacct----------------AATTCTTATCAGTT-------------GGAGTGCCAAAAGGCAAATGCAG------------------GTATTCA-------AGAATGCCA----ACTAATGAttaaaaagc-----------------------------------------------------ggaaa----------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446019 176 -  1162296 ACA----------TTTTGACTCCACCTCTGCCTTCATTA----TAATGCCAACTGTAATCAGTGTTGGCACTG------Gcgtttttgctcttttttctt-ttttctcgcttttttggTTTGCCTTGGAATGCTTATCAGT-----------------GTGCCAGAATGCCTAGTCAA-----------------CGCATTTG-------AGAATGCCA----ACTGAAGATT---ATGc-----------------------------------------------------ggaaa----------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457134 126 - 33334924 GAA------------CCGACGACGGCTCCACCTTCATTA----TAATGCCAA-----GTCAGTTTTTG-----------GCGCTGACGC--TCTTATCAG-TGCCCCCGCCG---------------AAATGCTT-----TT-------------AGAATGCCA-----ACCGATCATG----------------TGGATGGA-------AAAATgctt--------------------------------------------------------------------------gga------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      189645 286 +   193288 GTG------------CCGACTCCACCCTCACATTCATCACAGTCAACCCCTT-----ATCAGTCTTGGCACAT-----TGAGTTTCAGT--TCTTATCAGATGCCAATGTCA---------------AAA---------------------------AATGCCAACGCGACTGATCATG----------------TGAATAGATTCcaacaaaatgttttcgaatgaaacattaaaaaaatcacagtCGTTTTTGAACTTTGCATTTCACTTCACAAAAGTTGCCTcaatttcggaagttttttttcagacactaGTTATCTCGACAAGGTTAATTATACTATTCCTTTGATGTTCCAAAAGCCCAAA
i caePb3.Scfld02_254    C 0 I 55
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=-2754.000000
s ce10.chrX               645990 16 + 17718866 AAA--TTTCATTTTTTGT
s cb4.chrX              21130896  5 - 21540570 aaagc-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446195  3 -  1162296 ata---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457260  3 - 33334924 aaa---------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_254      189931 55 +   193288 I
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=-13781.000000
s ce10.chrX               646006 40 + 17718866 TGTTCTATCACA-------------------AGCCAGAAAAAGTTCAA----------AAAAGTGT--CAA---------
s cb4.chrX              21130901 32 - 21540570 -------------------------------actcaaaata-----------------aaaaattttcaaaaatgaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446198 24 -  1162296 ---------------------------------tcaaaatt-----------------gagAGGGT--GAAAATGA----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457263 11 - 33334924 ----------------------------------------------------------aataagtt--cTA---------
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_254      189986 66 +   193288 TGTCTTATCACAATCACTACAGAAAACATAAACttagaagaag---aattgataTGAAAAGAAGGT--caa---------
i caePb3.Scfld02_254    I 55 I 29
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=-415.000000
s ce10.chrX               646046 11 + 17718866 GATCAGCGACA
s cb4.chrX              21130933  8 - 21540570 aataagca---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3457275 10 - 33334924 -GTCGGTGCCA
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_254      190052 29 +   193288 I
e caeJap4.Scaffold54      144173 1064 +   258924 I
e caeRem4.Crem_Contig24   446222  0 -  1162296 C

a score=-596.000000
s ce10.chrX               646057 11 + 17718866 GTTTTTCCTAA
s cb4.chrX              21130941  4 - 21540570 gCTT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446222  3 -  1162296 -CTT-------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_254      190052 29 +   193288 I
e caeJap4.Scaffold54      144173 1064 +   258924 I
e caeSp111.Scaffold629   3457285  0 - 33334924 C

a score=-13669.000000
s ce10.chrX               646068 98 + 17718866 GTACAAAGAAAGTAGTGTATAAAATGAACT---GTTCCAAATGTTTGGTTTTGATGTTC-----CAAAAACTGTGATAGTGGTACAGTAAGCATATTGTAACTACT
s cb4.chrX              21130945 57 - 21540570 ---------------TTGA-AGCATTAGGT---GTTCGATGCAACTG--CGAGACTGTT-----GTGAAATTGGGCACATAGT-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446225 49 -  1162296 ---------------AAGAGAGCATTAGGT---GTTCTGTTCAGTTG--TTTTCTTGTC-----GATGAGTT---------CT-----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      190081 97 +   193288 GTATAACT-AAGTTAGGGAAAAGACTAAATTGGAACCCAGACAACTG--CGTTCTATTCtgaagaataattttcaaacgtATTCGAGTA---ATGTCTTAgct---
i caePb3.Scfld02_254    I 29 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I
e caeSp111.Scaffold629   3457285  0 - 33334924 C

a score=36781.000000
s ce10.chrX               646166 150 + 17718866 TTCAAATTTGAAGCTTAGTC-----CCGCAAAGTT------CAGGTTACCTTCCGAATAAGTCCTCGACA--TTCCACTTCCCAGAACTCTTCTTTCATATGTTCTATCGATTGATCGAGATCGATCAGAGTATGACGAATACGAAGTTGGTGGCTGAAAATG
s cb4.chrX              21131002 134 - 21540570 ------------CTAGAGTT-----TAGGGCATCT--------GGTTACCTTCGGAATACGTTCTAGACA--TTCCACTTTCCATTCTTTGGCGTTCATATGATCTGTCAATCGATCTGGAACGATCGGAGTAAGAAGAATACGATGTtagtggctgaaaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446274 123 -  1162296 ------------CTTTAGT--------------------------TTACCTTCTGAGTATGTTCTAGACA--TTCCGCTTCCCAAAACACGTCTCTCATAAGTTCTATCAATAGACTTGGAACGGTCCGAATATGATGAATAAGAAGTTGgtggctgaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457285 147 - 33334924 TTCAA---TAATGCTTAGTCGTTCTTATATGACTG-----------TACCTTCGGAATAAGTTCTAGACA--TGGCGCTGCCAAGAACTCTCCTCTCGTATGTTCTGTCAATAGATTTTGATCGGTCGGAATATGAAGAATACGAAGTTAGTGGCTGTAAGAA
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_254      190178 151 +   193288 -tcga----aattcgaaatc-----tagaaaactgtgaaaatagCATACCTTCCGAATACGTTCTAGAAAACTGATTCCccgataaacttt--tttcatacttcctatcaattgattttgaacgATCAGAATACGACGAATATGACGTAAAaggctgaaaata
i caePb3.Scfld02_254    C 0 I 26
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=-4463.000000
s ce10.chrX               646316 33 + 17718866 ---------GTATTATTCCAGGAACTCATTTCAATAGCTACA-
s cb4.chrX              21131136 28 - 21540570 ---------ttgtaattt------ctACTCTCCTCAAGCTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   446397 37 -  1162296 acaacaaataaacaaTCC------ATAATCTCGAAACTTTTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457435 25 - 33334924 ---------Ttaagattt------attttttcctaacGTT---
i caeSp111.Scaffold629  I 3 C 0
e caePb3.Scfld02_254      190329 26 +   193288 I
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=90858.000000
s ce10.chrX               646349 725 + 17718866  
s cb4.chrX              21131164 676 - 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   446434 683 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3457460 582 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      190355 639 +   193288  
i caePb3.Scfld02_254    I 26 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I

a score=-11194.000000
s ce10.chrX               647074 69 + 17718866 TCTACTTAAGTTCAACGGCTTAAAATCATACCACTTCCAGCCTTTTAAAGCTCTG--CTTAACACTGTCC-T
s cb4.chrX              21131845 13 - 21540570 ---------------------------------------------------------tttttgaagatcc--
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold629   3458042 20 - 33334924 ---------------------------ATAACG------------------------TTTAGgactgtttt-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      190994 55 +   193288 cgtgtttattttt------------tcataacgCCTT---TCTGTCCAAAATCAGATTATAATCCGGCTT--
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I
e caeRem4.Crem_Contig24   447117  0 -  1162296 C

a score=-4764.000000
s ce10.chrX               647143 88 + 17718866 CAATAGTCTTTTATCAAATCTACGATTCTCAATCTCTATAAACATAATTTTAGTCGTTTCAAAAATAGCGAGTTGTGCAATGTTCTCT
s cb4.chrX              21131858 12 - 21540570 -aACGTGTTTCTA---------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_254      191049 28 +   193288 TAACtgttttttatctga------------------------------------------aaaaaaaccg------------------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I
e caeSp111.Scaffold629   3458062  0 - 33334924 C
e caeRem4.Crem_Contig24   447117  0 -  1162296 C

a score=-1670.000000
s ce10.chrX               647231 17 + 17718866 GCCCGTTTGAGTCATAC--
s caeRem4.Crem_Contig24   447117 17 -  1162296 gTTTGTTTGATT--TATGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      191077  2 +   193288 ---------------ac--
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I
e cb4.chrX              21131870  0 - 21540570 C
e caeSp111.Scaffold629   3458062  0 - 33334924 C

a score=-2211.000000
s ce10.chrX               647248 34 + 17718866 TCAAAAAATGGGAAGAAACGATAAATGCTTCCTC
s caeRem4.Crem_Contig24   447134 11 -  1162296 TGAATAGTT-----------------------TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458062 11 - 33334924 tcaaaaaat-----------------------at
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191079 17 +   193288 caaaaaaattcaaag-----------------tt
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      144173 1064 +   258924 I
e cb4.chrX              21131870  0 - 21540570 C

a score=53661.000000
s ce10.chrX               647282 345 + 17718866 TACCTCTTGTGCGGATCTTGGCACATTATCATTCATATCAACTCGTGATACCGAACGTAGTTGTTGATCGCTTGCGTAGAAGCGAGTAGTAGTTCCTG----CAACATTTGGTCTTGATAATGATGTTT----ATCTAGTTTTTTTAAATATAATCTCGACGTTAGTCGGTCAGCATTTCCACAACAGTATGTACAAACCTCCAATCTTAGTTTCCCAGCGATCAATGACATTTTTCACTACATCAATGGGAGATGTATCCACAGGAGCGTCAACTTC---TCGATTTTCAGTTGCACTGTAACTTCGCTG----------------------------------------------------------------------------GTT-GTAGTTTT--------CTTG--------CTTTTCCTGACGATGCGTTTTGTA--------------TTCTCT
s cb4.chrX              21131870 372 - 21540570 -ACATCTTGAGAAACTCTTGAAATGTTATCATTCATATCAACACGAGACACAGAGCGCAGTTGTTTTTCATTTGC------ACGTGTAGCAGTTCCTG-----AACAACTCAActctattgtttttttttttggaaaaattttgttatag------------------GAATAGC--------------------TCACCTCCAAACTTAGTTTCCCAACGATCAATCACATTTTTGACTTCATCAATGGAAGATGTATCAACTGGAGACTCATTATAATGACCGGTTTCTGCTGCACTGTAGCTTCTCTGTGTCTTTTCTTGGtcct--------------tcaaaattcaaaa-------------aaattgtttctaatctgaaattcaaagttatACCCGATGCTTATAGGTTTCTTTGTTTCCTTGATAAGCTCTGTA--------------TTCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   447145 360 -  1162296 CACCTCTTGAGAATTTCTGGAGACGTTATCATTCATATCCACACGTGATACTGAACGGAGTTGCTGCTCATTGGT------ACAAGTTGTAGTACCtaaatttaatatttaaaaCTTATTGTTGTTTTC---------------------------------------GATTAAT--------------------CAACCTCCAATCTTGGTTTCCCAGCGAtcaatcacatttttgactaCATCAATGGGAGATGTATCTACCGGAGATTCGAGATTCTGTCGGTTTTCAGCAGCACTATAACTTCTTTGAGATTTCTCACGAGTCTGTAAAAATAAAAGGTCAAAGTACAAAGTGCTGTGCGACCT----------TACCCTATCATT-ATAGTTGT--------CTTG-----TTTTTGGTTGGTTTGATAAGCTCTGTA--------------CTCTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458073 317 - 33334924 tgccTCTTGTGTAGATCTAGATATGTTGTCGTTCATATCAACTCGAGACACCGAGCGATTTTGAGGATCAGCTGT------TTGAGAAC-GTGTCGTC-----GTTACTCCTAAACTTTGTTTATATTT------GAagtgttttttaaa------------------tgttaaC---------------------CACCTCCAATTTTAGTTTCCCAACGACCAATCACGTTTTTGACTACATCAATGGGAGATGTATCAACCGGGCTATCACCATGGTTT---TCCGCTGCTGAGCTGTAGCTCCTCTGTGTCATCTCACG-------------------------------------------------------GACCCTCTCGTC-ATATTTAT--------CTTG--------ATGATTTCCTTGATAAGCTCTGTA--------------TTCTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191096 334 +   193288 tacCTCTTGCGCAATTTGCGAAACGTTGTCATTCATATCTACGCGAGACACTGAACGAAGAGGTAATTCAGTTAC------TTGAGCCcggtttcctg-----aaaatttatgaactATTT---CATTC------CGATTGTGTTTTAAT------------------GCTTAGCA-------------------TTACCTCCAACTTTAGTTTCCCATCTTTCAATTACGTTTTTCACTACATCAATAGAAGATGTATCAACTGGagattcaaaatcatttctaTTCTCAGCAGCACTGTAGCTTCGTTGAAAGACAGCATC-------------------------------------------------------CGTCCTTTCATC-ATATATGT--------tttg--------atgatatttttttcgatctctGTACTGTGCGTCATTGCTTTTTT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      145237 280 +   258924 TACCTCGTGTG---TTGGAGAAGTGTTTTCATTCATATCGACTCGTGAAACTGAACGGAGCGGTGACTTTATCGA------ATATGAACGAGTGTTTT----CTTTATCAAAAACGTATTA----ATTT-------ACATAACTTTCTAC------------------TTTTTAT----------------------ACCTTCAATTTTTGTCTCAAaatgatttattacatttctcaCTACATCCACTGAAGTTGTGTCAACTGGTGACTCTAAATTCT------------CAGCCTTGGGGCTA------------------------------------------------------------------------TTCACCTTTATT-GGAA------------CTTC--------ttttttctgaagaaaaaatttaaa--------------ttttgt
i caeJap4.Scaffold54    I 1064 I 40

a score=3809.000000
s ce10.chrX               647627 29 + 17718866 GCTCCGGTGCTGCTGTTGTTGCTGATATC
s cb4.chrX              21132242 20 - 21540570 GGC---------TTGTTGTTTCTGGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   447505 20 -  1162296 ggt---------ttgttgtttttggaaCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458390 20 - 33334924 GGT---------TTCCTGCTCTTGgtatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191430 18 +   193288 GGT---------GT--TGTTTTTGGAATA
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      145517 40 +   258924 I

a score=15850.000000
s ce10.chrX               647656 72 + 17718866 CTTGCTC------------------TTGTCTCTGATAGTTTGGAGAGCTTCCATTATCATATCGCTGAACT---ATGTACTCTTCTTGGATCT
s cb4.chrX              21132262 69 - 21540570 CACGCTC------------------CAGCCCTTGAAAGTTTCGCGTCG---CATTATCATATCTTTTGACT---ATGTATTCTTCTGATATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   447525 72 -  1162296 CTTGACC------------------TTGTCCTTGATAGTTGTTCGGCGAGTCATTATCATATCTTTTGACA---ATATATTGTTCCTCTATCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458410 66 - 33334924 ctt----------------------ttcctctttg--aTATTTTGGTGAACCGGTATCATATCTTTTGACA---ATGTACTCTTCTTCAATCt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191448 75 +   193288 CTTGCTG------------------GTCTTCTTTGTTATACCATGGCGATTCGCTCCGATAACAGTTGACAGTGGTGTATTCCTCTTTGATCT
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      145557 87 +   258924 CTTGCTCAAAGTTTGCAGTATTCGAGTTATCTTGATAAACTTCCG---AGTTATTGTCATATTTTCTTACT---ATGTATTCTTCCTTTAtct
i caeJap4.Scaffold54    I 40 I 1008

a score=476.000000
s ce10.chrX               647728 1 + 17718866 G
s cb4.chrX              21132331 1 - 21540570 A
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig24   447597 1 -  1162296 g
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold629   3458476 1 - 33334924 g
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_254      191523 1 +   193288 G
i caePb3.Scfld02_254    C 0 I 2
e caeJap4.Scaffold54      145644 1008 +   258924 I

a score=-10776.000000
s ce10.chrX               647729 35 + 17718866 AAAGCAAATTA----AAGGCAAATTCCAAAAA--ACTGAA-T------------------------
s caeRem4.Crem_Contig24   447615 41 -  1162296 aactcAAAACGATAGATAGCAATcttgactaaaaattgaaa-------------------------
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold629   3458478 33 - 33334924 gattcagaa-------aaataaactcaaacagcaatcaaa--------------------------
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_254      191526 34 +   193288 GAATCAAAACGTT--GACTTAAACTTTGACAG----CGAA--------------------------
i caePb3.Scfld02_254    I 2 C 0
s caeJap4.Scaffold54      146652 48 +   258924 ---------------AAAgcagctttaaaaaa-aatagaa--aacagaaaattagCCAAAGTTGTT
i caeJap4.Scaffold54    I 1008 C 0
e cb4.chrX              21132332 41 - 21540570 I

a score=87760.000000
s ce10.chrX               647764 93 + 17718866 AACAAACTTTATACTCCTCGGTTCGTCTTCCAAATCGTGCTGGTTCAATGTCAACAATAGTGGTTGTTAATATGCCGCCTGGTGAGTAAACAA
s cb4.chrX              21132373 93 - 21540570 aacaaactttatATTCCTCAGTTCGTCGTCCAAAACTTGCCGGTTCAATGTCAACAATGGTGGTCGTTAATATGCCGCCTGGAGAGTAAACAA
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig24   447656 93 -  1162296 aacaaactttATATTCTTCGGTTCGTCGTCCAAAGCGTGCCGGTTCAATGTCAACAATTGTGGTCGTTAATATGCCGCCAGGGGAGTAAACAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458511 93 - 33334924 aacaaactttaTACTCTTCGGTTCGTCGCCCGTATCGTGCCGGTTCAATGTCAACAATTGTGGTCGTTAATATGCCGCCTGGTGAATAAACAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191560 93 +   193288 CACATACTTTATACTCATCTGTTCGTCTCCCATATCTGGCCGGCTCAATGTCAACAATAGTGGTCGTTAAAATACCGCCTGGCGAATGAACAA
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      146700 93 +   258924 GACCTACTTGAAACTCTTCGGTGCGTTTATTAAACTTCACAGGCTCGATGTCAACAATAGTAGTTGTTAAAATTCCTCCAGACGAATAAACAA
i caeJap4.Scaffold54    C 0 I 92

a score=-57209.000000
s ce10.chrX               647857 274 + 17718866 TGGCGGATCGATTCGGAGTGTAGGTTCC------------AT-TTTCTGCAATTCA--------------CAAAAATGGGTGCTGGTCTATTATTTGTATGCTCTCATTTTGAAACAAAATTCTAAGTTATAAAACATAAAAACGTAAAAAAACCTTTTCCGGTATGTAAATGAGTTCCGA--TCAGTTG-TTTTTATACATCTTGTATATAAAATTTATTTATCTATCGCAAAGTATATACATCGACA--AAGTTCCA--CTAAGATAATGGAAAAATTTGTATTTTTCAAGTTTCATGGCAGTTTC---
s cb4.chrX              21132466 216 - 21540570 CAGATGGTCGGTTTGAGGCGCAGTTTTCtgacaatcaatttt-tttttgtttatga--------------TAGAACT-------------------------CCTCACTTTG-----------CGATTTGTTAATCACCACAAC-------------TCTCGGTA-GGGACTTGGCACTTCCATTTACGGATTTAGGCGTGT--------TAGAGTTTTTTC------------TTGGTCGCACCGGAACGACTCTCTC--TTGATGcgatg--aaatttcgaattgtttAG---TCAGGGCG---TTTAC
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24   447749 156 -  1162296 CAGCTGAGCGGTTTGAGGCATAGTTTGC------------GT-TTCCTGAATAT----------------TAAAA-------------------------------------------------------TGAAGTA------------------------GGGA-GAAAATGAGCATTGT--TTTATAG-TTTGGGTG-AT--------TATCATATCTTT------------GTATGCatatcggaa--aattttca--cgGAAACATCA--TAATTCTAAATTGGTTG----------------TAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458604 115 - 33334924 CACCTGAGCGATTTGAAGAATAgttgga------------at-tttctgaaaaaag--------------caaga-------------------------------------------------------agGAATA------------------------------GATATCAACATTTA--TTGATGA-------------------------------------------------------AGAT--ATACTAGATGGCAAAGCAC------ATATAAGCTTTTTTG----------------C---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191653 127 +   193288 CAGCTGCATTA-TTGTACAttgatttca------------atgtttctggaaaaaaaaacaaacctcactcacaa-------------------------------------------------------aaaatca------------------------------aaattcaatattac--gagaaaa-------------------------------------------------------agaa--aatctaaa--GTCGAActt------attcaaacttttttg----------------t---
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      146793  92 +   258924 I

a score=-2471.000000
s ce10.chrX               648131 64 + 17718866 ATGGCGAAACCAATTATTTATCAATGTTTTATTTATGTTTTATGTTTGCATAAGAATTCACACG
s caeRem4.Crem_Contig24   447905 59 -  1162296 CTGGCAAAACAG-----CTCCCAGTTTCTTTCAGACAATTctcatttgtttcaaaaatttttcg
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_254      191780 32 +   193288 ----tgaaatag--------------------aAATAGTCTATGCTCAAATTAAGA--------
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      146793 92 +   258924 I
e cb4.chrX              21132682 39 - 21540570 I
e caeSp111.Scaffold629   3458719  0 - 33334924 C

a score=-40531.000000
s ce10.chrX               648195 174 + 17718866 ---TTG-ATTTATGACATGA-GAGATTAAACGCCATGTTTGAAAAAGTATATATG-----------------AAAATTTTTCAGGTTTACAGATATCAATACTAACAAAAACTTCGCTCGACATAACACTCCGATACTGCATATATTCAAAACTAAGTGCCAAAATCCCAAC-TCACTGTGACTTTTCATCTGTGAC
s cb4.chrX              21132721 102 - 21540570 ---ttg-attcctgaaaaaatcggattgaa---aaagtactgaaaaataaagaaa-----------------aatacgTGAACAGATACTAAATA-----GTTGGGAAAGAGTG------------------------------------------------------GAACGTAAACCGCA------------AAA
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig24   447964  66 -  1162296 ---ttgcattcatgcaaaaa--------------------------------aaa-----------------aacaattgtcgagct--------------tttgacaaaaatga----------------------------------------------------tgaac-tcACTTTCA------------GAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3458719  37 - 33334924 -ATTTG-TTTCATGAATAAA--------------------------------TAA-----------------CTCACTTTCCGATTTA-------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_254      191812 101 +   193288 AACTGA-Atacaataataaa--------------------------------aaatactgATGCGTTTAGTGCATGTTCTCCAGTTTATA-----------CTTTGAAAGAGCCCTC----------------------AAAGTATTCG-----------------TTCAAC-TCACTATCA------------GAT
i caePb3.Scfld02_254    C 0 C 0
e caeJap4.Scaffold54      146793  92 +   258924 I

a score=-23822.000000
s ce10.chrX               648369 387 + 17718866 TTATCAATA---ACCACAACACGGCTCCTCGAATTCCC----------ATTTCCATTGTAATCAA------CATTGGAGCTTTTTCTTGGTTTCAACGGAACGACTTTTTCCTGCTGCGACGAAATTTCAAATTGTTTGGTCAAGGCGTTCACAGTTGGCATCTCGGTTTTGATCTCTTTCTTTCTAGTGGTTCGATTGCTGGAAAACTGAT------GATATTAAAC--TGCAAACAACTTTTTT----CCAAAAA--AAAAACTGAACATGTAAAAAAGCAGATCGTAGGTGACTTGGATTGAGGGGGGAGGGGGGGGGGGGTAAATCTGGGACAAA-ACAACGTAAAAACAATGCGGTGTTGAGATTTAATC---TCTATACGTTTGTATCTCTCT------TTTTGACTGTTTTGCTGT----------------TACGAAC
s cb4.chrX              21132823 239 - 21540570 CGGTACATGCTTAGTATGACTT--GATCTGAATCTAG-----------GCcaaaacacgca----------aa---------------------aacaaaaccaaaacCTATT--CGAGATTTAATCTTTTA--ATTCATTTTGCGCGATCTCTGT-----TTTTTGTTatcctcttcatttttcttgc--tATGGTCAT------------------GAGGTTGGAG--atcatgaaacttttttcaaaatgcaaa--tagaa-------------------------aaat-------ttcc----------------------aaCCTGG----AA--------AAATCCTACACG--GT---------------------------------AAT------------CTATTGTGACCC-----------------AGAGAt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   448030 354 -  1162296 TTATCAATA---ACCACGACTCTAGACCTGGATTTGGCGTTTCTATTAACCGAAACGGGAg----------tatttgaattctttcttGGTCTCAACGGAACCACTCTTTCTTGATGAGACGAAATCTCGAACTGTTTGGTTAAGGCGTTGACTGTCGGCATTTCTGTCTTGATTTCCTTCTTTCGTGTAGTGCggttactgaaaaa--aaacgggagtaaactgaaa--aatagaaaagttgtcgaaaatttcaaaagtagaACACAATA--TGCGGCAAC------CGAATGACTCGATCTG----------------------AATCTAggccaaa--------aaacaaaacata--gtCGAGATTTAATC-------TCTGTTTTCATTTACGT------------CTATTTTGGTTT----------------GAAacgt
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3458756 314 - 33334924 ---TCAATG---ACAACAACTCTTGATCTAGACTTTGC----------ACTTCCATTCACATTTCCTG---TATTAGAGTTTTTTCTCGGACGAAGCGGAACCACTTTTTCTTGGTGAGAGGAGAGTTCGAACTGTTTGGTTAAGGCGTTCACGGTCGgcatttcagttttgatttcttttttc-tggtgGTACGGTTGCTGAAATAATAATCG----tat--------------aaaac------------gaaaa--aagaacttgGTA-GTAATACGAC--------------TTGGTTTG----------------------AATCTAGGTCGAA--------ACAGACAA------ATCGAGATTTAATC-------TTCCGTTCGATATGTGT------TTTCTACCAGTTTGatca----------------tgaaaac
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_254      191913 366 +   193288 TTGTCGATA---ACCACAATTCTTGATCGAGATTTGGC----------AGCTTCATTCacgtttttcgaattgtttgaaatatttctcGGTTGCAATGGCAGTATTTTCTCTTGTTGAGAAGAAGCCTCAAATCGTTTGGTCAAAGCGTTCACAGTGGGCATTTCGGTTTTTATCTCTTTCCTCTTTGTGGTAGAGCTGCTGAAACATTAAACT----TATGTTAAAG---TTAAAAAACctcctt----ttcaaaa--agtaaaccAATA-ACTACACAAC------TGAATGAATCTGTTTG----------------------AATCTAGGTCAGAGGCGACACAAAAACAAT-----ACTTAGATTTAATctcgtttttccaatttcatatCTGC----CGTTCGTACAAATGTAGcgt----------------ttggaac
i caePb3.Scfld02_254    C 0 C 0
s caeJap4.Scaffold54      146885 313 +   258924 TTATCAATA---TGCACGACTCTTGATTTAGAACGCTC----------ATACTTATCGTCGTGGA------AATGCGAAGTTTTTCCGGACCT------ACGTATCTTATCtttttttACTGAAGCCTCGAATTGTTTGGCAATCGCTGTTACTGTTGGCATGTCAGTTTCAGTTCCGTTGTTCCTTGTGGT------GCTGaaaaatcgc-------caaagtaaaacaaacaaacaat--------------aga--tacaaactggta--------------------------------a----------------------aatgtaggacaaa--------acaTGGTT------TTCGAGATTTAATC-----------TTGCTATATGTACAAAACATTTGgattgtttttgtttacttTTACTCGATAATTATGaac
i caeJap4.Scaffold54    I 92 I 2

a score=-5466.000000
s ce10.chrX               648756 22 + 17718866 TGTTTTATG-------------CAAATTCTTTTTG
s cb4.chrX              21133063 21 - 21540570 tatcttttc-------------aaaattaacttT-
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   448385 35 -  1162296 tgtttttttttgttagtaggggaaaatgacagttt
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_254      192279 17 +   193288 ------------------tgaaaaaacaaatcttt
i caePb3.Scfld02_254    C 0 N 0
s caeJap4.Scaffold54      147200 14 +   258924 ttttttgtg-------------aaaag--------
i caeJap4.Scaffold54    I 2 C 0
e caeSp111.Scaffold629   3459070  8 - 33334924 I

a score=-2488.000000
s ce10.chrX               648778  3 + 17718866 T-------------------GA
s cb4.chrX              21133084  2 - 21540570 --------------------AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   448420 22 -  1162296 caccaaaaaaatgCCACAAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      147214  3 +   258924 -------------------taA
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3459070  8 - 33334924 I

a score=48184.000000
s ce10.chrX               648781 288 + 17718866 ----ACTCACTTTGATGTAGTAATAGTTGTCAATTCCTCAAAAGTTGTGCTTTCTGAAACAATCAAATTCTG---AGATAGA--CCACTATCCAATCTTGCAGTTGAAGCCTGATCAAACGAAATAGGTGTCTGTCTGGGAGTTGGTGTACTTCTT------------GTTGTGT------AAGACGGACTTTCTCTGCCAGCTTTTATTGCCGACTGAGCAGAAAAGTATGGTATCGGATCAGC---------TTTTGCTAGAAT-------------AGTACATC--AATACATC--AAACTCGCATTA--------AATGTTAAATTTACCTGGAAACTCAGTCTC
s cb4.chrX              21133086 286 - 21540570 ----ACTCACTTTGATGTGGTGATGGTCGTCAACTCCTCAAAAGTGGTACTTTCCGATACTATCAAATTATAATTGGATAGT--GGACTATCTACACGGTTTGTGGATCGTCTATCAAATGAAACAGGAGTGTCTCTGGGA------GTATCTCTT------------GGAGTGT------GCGATGGAGTTACTCTTGCGGCTTTTGTGGCTGATTGAGCCGAAAAATAAGGAGTTGTGTCTGA---------TATTGCTG---------------TAAAATTATT--TATCGACT---TAcgcgtttcaaaaaaattaaaag----tttacCTGAGAATTCAGTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   448442 300 -  1162296 ----ACTTACTTGGAAGTAGTAATCGTGGTCAGTTCCTCAAAAGTAGTGCTCTCTGAAACTATCAAATTTTG---GGAGCCT--GGGCTATCCAAGCGTCCGGTAGAAATTTGGTCAAAAGATACAGGAGTATCTCTAGGA------GTGTCTCTTGGAGTTCCTCTCGGAGTAT------GAGCAGGAGTGACTCTACCAGCTTTGATAGCTGATTGGGCAGAGAAATAAGGGACTTGCTCAGA---------TTgagctggaaa--tgaaaaatataaaaacaat--gTTGCACC---TAGACTCTTCA--------AATAT----CTTACCTGGGAACTCAGTCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3459078 268 - 33334924 ----actCACTTGGAGGTGGTAATTGTGGtcaattcttcaaaagttGTGCTTTCCGAAACAATAAGGTTATTATTAGAAAGA--GCACTCTCAAGGCG------------------AGATGGAGTAGGTGTCTCTCTGGGT------GTTCCTCTT------------GGAGTATTAACACTAACTGGTGTCACTTTTCCGCTTCTGATAGCAGATTGtgcagaaaaataggggactGGCTCGGA---------TTTTGCtacaaacttcaaaaaataaaaaacagg--aaTTAA------------------------AATTT----CTTACCTGGGAACTCGGTTTC
i caeSp111.Scaffold629  I 8 C 0
s caeJap4.Scaffold54      147217 267 +   258924 ACAAAATTACGTGTTGGTAGTAATCGTGGTCAAGTCCTTAATTATAGAACTTTCTAGCAGAGCAATATCTTG---AGAACGTCCGTATTGTCGATGCT--------------GCTCAAATG--------------CTGGAA-------------TA------------GGGGAGT------TACACGATGAAACTCTTCCCGCTTGGAGAGCAGATTGAGCCGAAAAATATGGGACTGTTTGTGATGGAGGATCTCTTACTGAAAA------GAATAGAAAATCATTTAAATGGAGTTGATTGTCTCATTA--------AATAT------TACCTGAAAACTCGGTTTC
i caeJap4.Scaffold54    C 0 I 133

a score=8713.000000
s ce10.chrX               649069 188 + 17718866 TTTTCTGCTTGCTGTATAAATTCTTTCTGCCGATTCAACTTTGTTCCCGTTGGAA---------CGGTTTGACAGCTGAGA---------ATATGTGTGGGAATGAAGGTCCTCTAAACGTTTCGAATTTGAGGAAAATGA--------GAAATAAAATAAAAATTGGATTGCCAAGAA-----------AACTGGCTTATTACAACCACCCCTTTTCAATAAG--A
s cb4.chrX              21133372 179 - 21540570 TTTGCGGCCGTTGTTCAAGAGTCTTTCTACAGaat---cttttttggaaatatgaagCTTTGAATGTTTCGATAGTCGAGAGTCGCTGCTACGAGTGTGAGAATGAAAGTCTCCTGCAAAAT--GAATTCG-GAAAGTTTA------------------------------CCCAAGAATATGGAGACCAAATTGGCTTA------------TTGAGCAATATAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   448742 212 -  1162296 CTTCCGACCGGTATTCAATAGTCGCTCGACGGagtcaacttttttggaagtaGAA---TTTGAATGCTTAGACAATCGAGAATCGTTGCTATAAGTGTGGGAATGTAGATCGTCTGCAAGag-agaatttt-ggaaatttatgaGTTGGAAAATGAGTTTGAGTGTCTCTCtccaagaa----gaaaatgaactgGCTTACCA----CCTCTTTGCTTAGTATG--T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3459346 139 - 33334924 CTTTCTTCCAGTATTCAAAAGTCTCTCCACTGAATCGACTTTTCTAGGAGTAGAA---------CGTTTCGACAATCGCGAATCGGTGCTATAGGTGTGAGAATGTAGATCGtctggagaaa--aaat----gagaattga-------------------------------------------------aaGTTTCTTA----------------------TG--T
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147484 133 +   258924 I

a score=52543.000000
s ce10.chrX               649257 238 + 17718866 CTATATTTGGC--------CAACTCCACTGCGGAGGTGT---TACCAAGATTACTCATTGTTTAACCTATTTGGAGTGGT-TAACTTTTTCCCTTTT---TCAATTTGCACGACAAAAAGT----------GACTTACCTATT---------TCTGAGTCCAGGGAATATGGTGAGAAGGCAAGCGGCAGGTCATGCCTTGAAGGCTTAACTGTGGATGTGTATGGAGCGGAATATGAAAGCGATACTTCTTGAATTAACTGCTTTTGGAGG
s cb4.chrX              21133551 233 - 21540570 CTATGTTTGGTAAACACAACG--CCTCTCGCGGAGGTGTAACCTCCAAGATTAGTCATTGTTtaacttctatttttttttgta------------tt---taaat----------ATGA------------AACCTACCAGTTTTTTCATACTCCGATTCAAatgaaaatggggaaaaagcGAGTGGTAAGTCATGTCTTAAAGGTTTAACTGTGGAAGTATACGGTGCTGAGTAGGATAACGAGACTTCTTGAATCAACTGTTTCTGGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   448954 235 -  1162296 CTATATTTGGT--------CA--CCTCCCATACGGGGGTGTTTCCTAAGATTACTCATTGTTTAACTTCTAATACTGAGT-TA------------TT---GAAat-----------tgatttctttctttcaactCACCAATTTTTTCGTACTCTGACTCAATTGAATATGGGGAGAAAGCAAGCGGTAAATCATGTCTTGATGGTTTAACTGTGGAGGTGTATGGAGCGGAATAGGATAGAGAAACTTCTTGgattaattgtttttgaagT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3459485 221 - 33334924 CTATATTTGGT------------CTCTGCGCGGAGGTGT------TAGGATTACTCATTGTTTAACTTATTTAAAGTGGT-TA------------TGGGAGAAAT----------AAGAGT----------GACTTAccgattttttcatattccgAATCGGCCGAGTAGGGGGAGTAAGCAAGCGGTAAATCGTGTTTAGAAGGTTTAACTGTGGAGGTGTAGGGAGCAGAATAAGAAAGAGATACTTCTTGAATTAACTGTTTTTGTAAT
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      147617 217 +   258924 CCATATTTGGT--------TATGTGCAATGCGGAGGTGTTGTTTC-----TTACTCACAGATTAAACAATAGCGAGTAAA-TAGCAGTC------TT---TGAAC----------ATAAAT----------TACATTACCATTCTGCA----CTTGATTCCATTG----TGGCGA-TACGCCGTTGATA--TAGTGTTTCCGTGGTTGAGTTTCTGGAGCATACGGGGAGGAATAGGATAGAGAAACTTCTTGGATAAACTGTTGTGAAGG-
i caeJap4.Scaffold54    I 133 I 1099

a score=7821.000000
s ce10.chrX               649495 19 + 17718866 GGAGGTGACATCTGAAAAT
s cb4.chrX              21133784 19 - 21540570 GGAGGCGACATCTGAAATG
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig24   449189 19 -  1162296 GGTGgggacatctgaaaat
i caeRem4.Crem_Contig24 C 0 I 92
s caeSp111.Scaffold629   3459706 19 - 33334924 GGTGGcgacatctgaaaat
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=0.000000
s ce10.chrX               649514 4 + 17718866 ACTA
e caeJap4.Scaffold54      147834 1099 +   258924 I
e cb4.chrX              21133803 60 - 21540570 I
e caeSp111.Scaffold629   3459725 0 - 33334924 C
e caeRem4.Crem_Contig24   449208 92 -  1162296 I

a score=-6598.000000
s ce10.chrX               649518 489 + 17718866 CAGTGTAGGATTTCGAAAATAAACTCAAGTTTTCTTGAGCTGTAAAAACAATTTTCGCACAACATTTAATTTGAAAATGTATATATTTTCCCAATACTCAAGCAGATATCTTCACAAAAAGGAAACACACTTTTTGAACCAAACCAAAACAACATCGGATCAAGTGAAAGTTTTTTGTTTTTTTTTTTTTATTTTCTAGTAGACTCACAAATAAAATAGACAATGAATCGAAACTTACAATTAATCGCTTCTAAGCTGAAAAAATGTGAACACCAAATAAATGTTGTTTTTCAATTAAAAAACTGAGAAAACTTTGAAAAAAACCTTTATCTATGTACTGAAAAACATTTTTTTCAATCTGTTAAGAAATGCCCAATAATGATGCCCAAAAACCTAGAAAATATATAGTAATTAAATCTGTATTAAATAATTTGTAAAACAGTTTCGA-CTTCAGCACTTTGGAATAATTCAAAAGCCACTGGTCTCACA
s caeSp111.Scaffold629   3459725 212 - 33334924 -------------------taaagtCATATTCT----------------------------------------AAAATG------------------------------CTACTTGAAGTGGGAA---------------------------------------TGATcgtgtttca---ttttttcttgatattc------------------------------gtcaaaaagttcagt-----------------------tttgaaaaccag-------------TTCAGTTA----------taagttttggaaaa-------------------ataagtgTTTTGtc-------ttaaaaaag----aataat--cgTTCAAAATCC-----AACGT------------TCTACACTAGAAAATC-------CGGTCTAGATCTTCCACAAACCAAAATGACC------------GTTTC---
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I
e cb4.chrX              21133803  60 - 21540570 I
e caeRem4.Crem_Contig24   449208  92 -  1162296 I

a score=0.000000
s ce10.chrX               650007 7 + 17718866 TCAAAAA
e caeJap4.Scaffold54      147834 1099 +   258924 I
e cb4.chrX              21133803 60 - 21540570 I
e caeSp111.Scaffold629   3459937 0 - 33334924 C
e caeRem4.Crem_Contig24   449208 92 -  1162296 I

a score=32033.000000
s ce10.chrX               650014 171 + 17718866 AAAAAACTTACCGCAGAATTGGTATACCCACTGTATCGCTCATCGTCGGTACTAAATGGTGTGGATGTTAACGACATTTGTGATGAGGACCCTAGAAAA-------------------A------------GAACAATAA---AAGTGA-AGTGGAAAGGTGATGGTAGTAGGGAAAAGAA--AAACAGAGGAATAAAC------GCCAGTCAC
s cb4.chrX              21133863 163 - 21540570 AAATTACTCACCGCCGAATTGG---------TGTAACGCTCATCGTCGGTACTAAATGGTGTTGATGTTAACGACATTTCCGACGAGGACCCTGgaaaa-----ttt-----------aatt---------gaaaaaaaaacgtaaaga-attaagaa--------------gaggaggaa--aaggACATAAGGTGGCTATTATGCTACTCAC
i cb4.chrX              I 60 I 15
s caeRem4.Crem_Contig24   449300 157 -  1162296 GAGAAACTTACCGCAGAATTGGTATACCCACTGTAACGCTCATCGTCGGTACTAAATGGCGTCGATGTTAACGACATTTGTGATGAGGACCctagaaaa--------------------------------gaagaacaa---taAACA-ATTAGAAA-------------CGAAGAGGgc--aaagaaataaataaac------gTCAGTAAC
i caeRem4.Crem_Contig24 I 92 C 0
s caeSp111.Scaffold629   3459937 190 - 33334924 --AAAACTTACCGCAGAATTAT---ACCCACTGTAACGCTCATCATCGGTGCTAAACGG---AGATGTTAACGACATTTGTGATGAGgagcctgaaaaaaaacgtttagaatacaaaaaatcgGGTGGTGAAAAGAACAA---TAGACACATTAGAAAG------------TGAAGAGGGCAAAAGAAAGTAAGATGACAGGTG-GCTATTCGC
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=-292.000000
s ce10.chrX               650185 12 + 17718866 --CTAGATGACAGG--
s caeRem4.Crem_Contig24   449457 12 -  1162296 --CTAGATGACAGG--
i caeRem4.Crem_Contig24 C 0 I 46
s caeSp111.Scaffold629   3460127 16 - 33334924 CTCCACTTTTCAACCA
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I
e cb4.chrX              21134026 15 - 21540570 I

a score=-11233.000000
s ce10.chrX               650197 466 + 17718866 CATAATTGCCTACTACTCAAGTA------AATCTTCG-----------TGGTCGCCTGA-CCTGTTTGTTTGTGATGAGG------AGTTTTTTTCGACGGTTTTTGTTTCGAAAA--CGCGCATTTAATGAAATGAAACACAAAGTGAGAGTTATTGAAG-AAAGATGAAGAGTAGCTCCAGTGAAAGAAGAGTGGTAACTGATATGTGTTCCTGTGACGTAAGGACTTTAGAAAATACATAGCTTGTTCAGGTTTGTAATGTTCAGGTTTGTAAGGTTTCTTAAGTTGCAC--ATTGAATTCATTAGAAAATTAATTGCACTGACAAAAACTCTGCTGCTTACAGTTAGTTCTGCCAGCTCATTTCGGAATGCAAACTTCAAAAATGTGGCAAATTTAAGGGTTTTGACGCAGTTCAACTAAAAATATCTTTCTAAAATAAAAAATAAATTGCTGTTTTTTCGTGTTGAAACAAAATTAAGTGAAAAATATTT
s cb4.chrX              21134041 295 - 21540570 CATAATTGCCTCCTACTCAAGTAAGTCAAAATCCTCCATTCTCTTCAGCCGTCGCCTGACCCTGTTTGTTTGTGTttgga------agaattttttgacgg-ttttgtttcaaaaa--gaga---------aaatgaaaga------gaacAATTTGGATG-AAATATG-----------------------------------------------------TGTGACTTG-GACA---------------------GAAATGTTTA-----GTAAGA------AGACAAAAC--ATTCAC--GAGAGGAGCAAAA--------CACTAAAAGTCTT-------------------------------TGAGAACACAATACCAATGTTTAGCGG---TAAG----------------------ATAGA---TTCGAAAATAATATTTGAGTCAC----ATCTCGTTTCAGAATGGACTCA--------------
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig24   449515 270 -  1162296 CATAATTGCGTACTACTCAAGTAAGTCGGAATCCTCTG------------GTCGCCTGACCCACGTTGTTTGTGTTCCGAT----TGCAGttttttgacgg-ttttgaTCCGAAAA--CGCAC------TCAAATAAAACA------GAGAG---TAAATGAAAAGATG-----------------------------------------------------AACGATTTGAGAAA---------------------GTGAGGCTTA-------AAGA------AAATGAGACCTATTTACTTGGTCGGAGAAGAA--------GTCGAAAgatgtt---------------------------tttctgaaagaagaaacacAATG--------------------------------------TAAAGCTTTTGAGAATA--------------------------caaaaagaatata-----aaaatattt
i caeRem4.Crem_Contig24 I 46 I 19
s caeSp111.Scaffold629   3460143 209 - 33334924 CATAATTGCCTACTACTCAAGTAAGTCGAAATCCTCT------------------CCGACCCTGTTTGTTTGTGTTCCGATtcaataagtttttttgacgg-ttttgtttcgaaaattggag---------aaatgaaaca------gagAG--TTAGGAG-GAAAATG------------------------------------------------------ACGAATTG---------------------------------CCA-----------------------GAT--ATTTGA-------------------------------------------------------------------TGAACGAAAAAACACAGTA-----------------------------------------AGCTGTTGAGACTA--------------------------CAA---GAATTCagaggaaaaatattt
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=-3035.000000
s ce10.chrX               650663 29 + 17718866 TTGTTGAAAATGCACTACAAGAAAAAATG
s cb4.chrX              21134336  6 - 21540570 ------------CACCAC-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3460352 20 - 33334924 gtggTT----TTCAGCGGGAAAAT-----
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I
e caeRem4.Crem_Contig24   449785 19 -  1162296 I

a score=39367.000000
s ce10.chrX               650692 265 + 17718866 TGATGCTGGACTATACACGTGCCAACAACATTTTCTCCACATTTCAGATCAGAAATAAGGAAACAGACACAAACAAACACAAAGTGGGGGCCATCCC------CCTGTGTATTCAAATCCAATATGAAAAGTTGCTG------GTTGACTGTTTGCCGAGCACTTGGT--AAAAGATGCGCGAACACTATTGCACTGTGAACAAACTGATGATGATTGGGCAAC--------------------------GTTTGTGCG---------GGCAATAAAAAAATATTTATTGCGGCGTTTTTGACACTCAA--------------------------------AAAAA----------
s cb4.chrX              21134342 293 - 21540570 -------------TACTCG---------------CATCAGA-AAAAGATCAGAAATAAGAAAACTGACACAAACAAATACGAGAAATAGA-TGGCAC------TTTGTGTATTCAAATCTAAAATG-AAAGTTGCTAGGGGGAGTTGACTGTTTGCGGAGCACTTGGT--AAAAGATGCGCGAACACTATTGCACTGTGAACAAAC---TGATGATTgggcaacttttttttcctgtgATGTCCGTGAATGTGTGAGTG---------GGTCATAAAA-------TAAGTTTGC-TTTCTGAAAtaaga----agaaatgaaaattttagtgtTGCGACTcaaatagtctgaaaaa
i cb4.chrX              C 0 I 86
s caeRem4.Crem_Contig24   449804 250 -  1162296 tgGTCGTGGACTATACTCGGCCC----GTGCCAACTTCACATTACAGAtcggaaataagaaaacagaCACAAACAAACACGAAGATGGGA-TGGCAC------TTTGTGTATTCAAATCCAAAACG-AAAGTTG---------GATGACTGTTTGCCGAGCACTTGGT--AAAAGATGCGCGAACACTATTGCACTGTGAACAAACTGATGATGATTGGGcaat------------------------gtgtgtgtgtg---------ggCAATAAAAAG-----TATAGcggt-tttttggaata-----------------------------------aaatac---------
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold629   3460372 242 - 33334924 -------------------------------TGATGCTGGACTACATGccagaaataagaaaacagaCACACAAGGGGACAAACATG----TGGCCCATCGTTTCTGTGTATTCAAATCC-------AAAGTTG---------CCTGACTGTTTGCCGAGCACTTGGTAAAAAAGATGCGCGAACACTATTGCACTGTGAACAAAC---TGATGATTGGACTGC------------------------AtatttgagagaaaagaggaggctATAAAA--------------AC-TGTTTGGCACGAGGTTTTAGAGtttgaaagtttga-----------aaaaa----------
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=-11892.000000
s ce10.chrX               650957  78 + 17718866 TTGGAGTAACCTCACTTTCGGG--------GAAACGCAA-------------------CAAAAAAAAAACTAGGAAT--------------GCTGGG--ACTTGGGGAGA--AAG----------------------------TGCTCAAA------------------------------
s caeRem4.Crem_Contig24   450054 179 -  1162296 TTGAAGTGAAGAAGACTTCAACTTGAACTTCAAACTGTGAGAAATGTAGCAAAATGCTCAAGTCAAAAAATAGTTGTGTATATCGCAACTGGTCAGT--GTTTGAGATAACCACACatgacttttttgtttcttggtGTTTATTATTATAAAGTTCTGTTATTTAATGAAGAGATAAGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3460614  71 - 33334924 -----------------tcggc--------CAAACTCTG------------------------------------TTTTATAGCAC-----GTTAGTAAGATCGTGAATAccaaa----------------------------tattgaaaa------------agaaaagccctaa----
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I
e cb4.chrX              21134635  86 - 21540570 I

a score=-15452.000000
s ce10.chrX               651035 491 + 17718866  
s cb4.chrX              21134721 441 - 21540570  
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig24   450233 400 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3460685 518 - 33334924  
i caeSp111.Scaffold629  C 0 I 12
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=-2380.000000
s ce10.chrX               651526 24 + 17718866 GACCTGACACCTGAAACATCAATT
s cb4.chrX              21135162 14 - 21540570 AAC--------TGGGATAT--GTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   450633  3 -  1162296 AGC---------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I
e caeSp111.Scaffold629   3461203 12 - 33334924 I

a score=17.000000
s ce10.chrX               651550 495 + 17718866  
s cb4.chrX              21135176 477 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   450636 431 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3461215 348 - 33334924  
i caeSp111.Scaffold629  I 12 C 0
e caeJap4.Scaffold54      147834 1099 +   258924 I

a score=47368.000000
s ce10.chrX               652045 94 + 17718866 ACCATTTTTGTAGACTGTTTTTCTAGTCTGTGGGTACAATTGCGGAGTGGTCATGGTAAACACGTGAGCAGATGTCACATCTTTTGCCTG----AAAA-
s cb4.chrX              21135653 96 - 21540570 ACCTTTTTTGTAGACTGTTTTCCTGGTTTGAGGATACAATTGAGGAGTGGACATTGTGAAAACATGAGCAGATGTGACGTCATTTGCCTGAA--CACA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   451067 98 -  1162296 accACTTTTGTAGactgtttttcttgtttgagGGTAGAGTTGTGGAGTAGTCATGGTGAATACATGTGCTGACGTGACATCTTTTgcctgaaatcgaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3461563 94 - 33334924 acCGTTTTTGTAGACTGTTTTCCTTGTTTGCGGGTAGAGTTGGGGAGTCGTCATTGTGAATACGTGCGCAGACGTAACGTCTTTTGCCTA----CAAA-
i caeSp111.Scaffold629  C 0 I 31
s caeJap4.Scaffold54      148933 99 +   258924 ATCACTTTTGTGTACCGTTTTTCTTGTCTGCGGGTACAGTTGAGGAGTGGTAGTTGTGAATACGTAGGAATTTGTATATTCTTTTTCCTTAaaccataa
i caeJap4.Scaffold54    I 1099 C 0

a score=-1570.000000
s ce10.chrX               652139 20 + 17718866 AAACTGATAGatttaaaact
s cb4.chrX              21135749 18 - 21540570 GAATTtgt--attcaaaact
i cb4.chrX              C 0 I 205
s caeRem4.Crem_Contig24   451165  7 -  1162296 aaatttc-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      149032 18 +   258924 aaaataat--aataaaaccT
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3461657 31 - 33334924 I

a score=898.000000
s ce10.chrX               652159 10 + 17718866 aaaaaaatat
s caeRem4.Crem_Contig24   451172 10 -  1162296 agaaaagtat
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      149050 10 +   258924 TAGATAATGT
i caeJap4.Scaffold54    C 0 I 303
e cb4.chrX              21135767 205 - 21540570 I
e caeSp111.Scaffold629   3461657 31 - 33334924 I

a score=91.000000
s ce10.chrX               652169 1 + 17718866 t
s caeRem4.Crem_Contig24   451182 1 -  1162296 t
i caeRem4.Crem_Contig24 C 0 I 161
e caeJap4.Scaffold54      149060 303 +   258924 I
e cb4.chrX              21135767 205 - 21540570 I
e caeSp111.Scaffold629   3461657 31 - 33334924 I

a score=0.000000
s ce10.chrX               652170 759 + 17718866  
e caeJap4.Scaffold54      149060 303 +   258924 I
e cb4.chrX              21135767 205 - 21540570 I
e caeSp111.Scaffold629   3461657  31 - 33334924 I
e caeRem4.Crem_Contig24   451183 161 -  1162296 I

a score=586.000000
s ce10.chrX               652929 25 + 17718866 TGTGAAGAATAGCTTTTTATTACAA
s cb4.chrX              21135972 24 - 21540570 TGTTAAGAATGGTTTAGTATTCTA-
i cb4.chrX              I 205 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I
e caeSp111.Scaffold629   3461657 31 - 33334924 I
e caeRem4.Crem_Contig24   451183 161 -  1162296 I

a score=-1118.000000
s ce10.chrX               652954 21 + 17718866 ATTCAAATCGGAAAAAGAACA
s cb4.chrX              21135996  8 - 21540570 ----------GAACACCA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   451344 18 -  1162296 attcaagtttttaaaata---
i caeRem4.Crem_Contig24 I 161 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I
e caeSp111.Scaffold629   3461657 31 - 33334924 I

a score=37917.000000
s ce10.chrX               652975 111 + 17718866 TACCTCATCATCTGTAAATGACACAATAAGTGTGCACAATGGAGCTTCTTTCAGCTTACACTCATTCCCTTTCACCACATTTGATGGTACCACGTGATTTTCTCGCCTGAA
s cb4.chrX              21136004 110 - 21540570 -ACCTCATCATCGGTAAATGACACAATCAGTGTACACAATGGAGTTTCTTTCAACTGAAGCTCATTACCTTTGACAATGTTCGATGGGACGACATGGTTCTCACGCCTAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   451362 110 -  1162296 -accTCATCGTCCGTGAACGACACAATTAGAGTACACAGAGGTGCTTCTTTCAGTTGACATTCCTTGCCCTTCACAACATTAGAAGGGATGACATGATTCTCTCGCCTGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3461688 111 - 33334924 TACCTCATCATTAGTGAAAGAGACAATAAGAGTACAAAGTGGTGTCTCTTTCAATTGACACTCATTTCCTTTGATCACATTCGAAGGAATGACATGGTTTTCGCGCCTGAA
i caeSp111.Scaffold629  I 31 I 41
e caeJap4.Scaffold54      149060 303 +   258924 I

a score=546.000000
s ce10.chrX               653086 2 + 17718866 AA
s cb4.chrX              21136114 2 - 21540570 AA
i cb4.chrX              C 0 I 650
s caeRem4.Crem_Contig24   451472 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I
e caeSp111.Scaffold629   3461799 41 - 33334924 I

a score=83.000000
s ce10.chrX               653088 8 + 17718866 CCATGTCA
s caeRem4.Crem_Contig24   451474 8 -  1162296 TAATTCCA
i caeRem4.Crem_Contig24 C 0 I 26
e caeJap4.Scaffold54      149060 303 +   258924 I
e cb4.chrX              21136116 650 - 21540570 I
e caeSp111.Scaffold629   3461799 41 - 33334924 I

a score=0.000000
s ce10.chrX               653096 1682 + 17718866  
e caeJap4.Scaffold54      149060  303 +   258924 I
e cb4.chrX              21136116  650 - 21540570 I
e caeSp111.Scaffold629   3461799   41 - 33334924 I
e caeRem4.Crem_Contig24   451482   26 -  1162296 I

a score=282.000000
s ce10.chrX               654778 3 + 17718866 ATC
s caeRem4.Crem_Contig24   451508 3 -  1162296 ATC
i caeRem4.Crem_Contig24 I 26 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I
e cb4.chrX              21136116 650 - 21540570 I
e caeSp111.Scaffold629   3461799 41 - 33334924 I

a score=29.000000
s ce10.chrX               654781 1 + 17718866 T
s caeRem4.Crem_Contig24   451511 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3461840 1 - 33334924 t
i caeSp111.Scaffold629  I 41 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I
e cb4.chrX              21136116 650 - 21540570 I

a score=13727.000000
s ce10.chrX               654782 195 + 17718866 ACTCACTTTTTGCCACCGGAGTCAGACGGAACCAGCATATTCAGT----------TCTCAACG-----ATTGAAAACAAGGATAGTG--------------------------AGGAA----------------------ATTGTATAACTTACAATTGTT--TGTTGATATTTAG---TTGACAAATAACGTGAAAACTGTTGGGCAAGGGAGTTATTCCG-CCCCAAACTTCTCAATATTCAAAAGTGTATTCCGTAAGTT----G
s cb4.chrX              21136766 212 - 21540570 ACTTACTTCTTACCACCAGTGTCCGACGAAGCCAGCATTTCTACC----------GTTCAACAGAAATTGTTGAATTACAGCTTTTGTGTGTTTTCAATTATTATGTTTTGAAAGGga----------------------ataaaacaaat----tttgtttGTGTTGATGTTAACGTTTTGTCAAAT-ATGTGTAAACCGAC-------TCTATCGTTCCG-CCC--ATCTTCTCAATATTCA------AATTCCGTAAGTT---GG
i cb4.chrX              I 650 C 0
s caeRem4.Crem_Contig24   451512 237 -  1162296 ACTCACTTCTTGCCTCCAGAATCCGAAGAGACGAGCATATCTAGCTCTTTTCAGTGTTCAACAAGTA-CGTTGAATAACAGTTTGTa---------gaattcgaaattcagaattcgaagtttttggaattttcaattcgatagaaaaatt----gttgtt--tgtTGATATTACAA--TTGACAAATAACGTGTAAACTGAC--------AAGTTATGCCG-CCC--ATCTTCTCAATATTCAAGA--GAATTCCGTAAGTTAGAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3461841 174 - 33334924 actcacttttttcctccGGAGTCCGAAGAAACAAGCATTTAGA------------GTTCGA-------ATTTAAATTCTA--TTACA---------------AATCTTTCGGCAACAA-------------------ccgtcaaaaaaa------gttgtt--tgtTGATATTTAG---TTTTCAAACAACATGACAAC---------------TTATGCCGCCCC--ATCTTCTCAATATTC-------AATTCCGTAAACT----G
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      149060 303 +   258924 I

a score=20008.000000
s ce10.chrX               654977 48 + 17718866 GGATTGCATGTAATTGTATTCAGCTAATCCTCT----TTTGAG---TGCTACATT
s cb4.chrX              21136978 42 - 21540570 AGATTTTACATAATTTTATTCTGCTAATCCTCT-------------TGCAACATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   451749 55 -  1162296 GGATTGCCTGTAATTGTATTCTGCTAATCCTCTTCTTTCGGAGGACTGCTACACT
i caeRem4.Crem_Contig24 C 0 I 270
s caeSp111.Scaffold629   3462015 51 - 33334924 GGATTGCTTGTAATTGTATTCAGCTAATCCTCT----TTCAAGTGCTGTTACACA
i caeSp111.Scaffold629  C 0 I 4
s caeJap4.Scaffold54      149363 50 +   258924 GGATGGCTTTTAATTGTATTCTGATAATCCTCT----TTCCGTAA-TACTACACG
i caeJap4.Scaffold54    I 303 C 0

a score=213.000000
s ce10.chrX               655025 5 + 17718866 GATTC
s cb4.chrX              21137020 5 - 21540570 CACGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3462070 5 - 33334924 TACTT
i caeSp111.Scaffold629  I 4 C 0
s caeJap4.Scaffold54      149413 5 +   258924 AATTC
i caeJap4.Scaffold54    C 0 I 1525
e caeRem4.Crem_Contig24   451804 270 -  1162296 I

a score=1791.000000
s ce10.chrX               655030 26 + 17718866 TCACACGTTAAGTTCAC--AACTTTCCC
s cb4.chrX              21137025 28 - 21540570 CTATGTGTTTGGTTTTTACAAGTTTTTC
i cb4.chrX              C 0 I 163
s caeSp111.Scaffold629   3462075 26 - 33334924 TCATACGTTAAGTTTCT--Caccttttc
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      149418 1525 +   258924 I
e caeRem4.Crem_Contig24   451804 270 -  1162296 I

a score=763.000000
s ce10.chrX               655056 167 + 17718866 GAATTGAAGAGATAATATTATATAACCGGAAGTTTGAGGTTTTTGAAACTATTGAG--AAAGTGTCACAGGAAAGAGACATGCCAAAAAATTTATCAATCCAGTTCAGCGAATTTTCTAACGTTCACAAAACT--GATGAGTAGGATCAAGGGGGTCGATTCATTCAAAAA
s caeSp111.Scaffold629   3462101 139 - 33334924 gaa---aaaagat---------tgaaaaaaagttttgaggGTTTGGAACCGGGGAAACAAATTTTTactggaga----------aaaaatgatattgtTCCCAT------AATGTATCAACGT----GAGACTAGGCTGGATTGGACTAGGAGAGTCTATCCAGTAAAAAA
i caeSp111.Scaffold629  C 0 I 145
e caeJap4.Scaffold54      149418 1525 +   258924 I
e cb4.chrX              21137053 163 - 21540570 I
e caeRem4.Crem_Contig24   451804 270 -  1162296 I

a score=0.000000
s ce10.chrX               655223 789 + 17718866  
e caeJap4.Scaffold54      149418 1525 +   258924 I
e cb4.chrX              21137053 163 - 21540570 I
e caeSp111.Scaffold629   3462240 145 - 33334924 I
e caeRem4.Crem_Contig24   451804 270 -  1162296 I

a score=707.000000
s ce10.chrX               656012  89 + 17718866 TTTTATCTGAAA---------TTTTATTTTTTCT----CATAAAATTCAA--TTCTGAAAATCTTTTCCTTTCCATTAAACCGAAACTAGCCGCAATATAAGCA
s caeRem4.Crem_Contig24   452074 104 -  1162296 ttatgtctgaaaaatgctttatttcattttttccgaaacatAATTCCCACCTTTCCCAAAATCTGTACTCTTCTATATTTCTCACATTTCGCTAGGCATGATCA
i caeRem4.Crem_Contig24 I 270 I 4
e caeJap4.Scaffold54      149418 1525 +   258924 I
e cb4.chrX              21137053 163 - 21540570 I
e caeSp111.Scaffold629   3462240 145 - 33334924 I

a score=2473.000000
s ce10.chrX               656101 23 + 17718866 ATAATCAAT-TAAAATTATAAAG-A
s cb4.chrX              21137216 20 - 21540570 ATAATCATC-----ATCactatgaa
i cb4.chrX              I 163 C 0
s caeRem4.Crem_Contig24   452182 21 -  1162296 GAAATCATC---AAATCATAATg-a
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold629   3462385 24 - 33334924 ataatcaattgaaaatcataatg-a
i caeSp111.Scaffold629  I 145 C 0
e caeJap4.Scaffold54      149418 1525 +   258924 I

a score=216340.000000
s ce10.chrX               656124 979 + 17718866  
s cb4.chrX              21137236 898 - 21540570  
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig24   452203 878 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3462409 771 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      150943 763 +   258924  
i caeJap4.Scaffold54    I 1525 C 0

a score=335.000000
s ce10.chrX               657103 16 + 17718866 CCATAATGAT-CAGAAA
s caeRem4.Crem_Contig24   453081 13 -  1162296 ---CAATGAT-CATGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463180 16 - 33334924 -CACATTGGTCCACAGa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      151706 16 +   258924 CAAGAAACAT-CAAAAA
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21138134 52 - 21540570 I

a score=-233.000000
s ce10.chrX               657119 6 + 17718866 ACAAAA
s caeRem4.Crem_Contig24   453094 6 -  1162296 TCAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463196 5 - 33334924 taaaa-
i caeSp111.Scaffold629  C 0 I 113
e caeJap4.Scaffold54      151722 0 +   258924 C
e cb4.chrX              21138134 52 - 21540570 I

a score=-795.000000
s ce10.chrX               657125 72 + 17718866 GTAGTGTTAAGCTCTGTCATACATTATTTGTATTATGTAATGACTTTTTGAAACTAAAGAAAAAATTTTTAA
s caeRem4.Crem_Contig24   453100 21 -  1162296 G---------------------------------------------------ATTGAATAAAGAATATTTAA
i caeRem4.Crem_Contig24 C 0 I 14
e caeJap4.Scaffold54      151722  0 +   258924 C
e cb4.chrX              21138134 52 - 21540570 I
e caeSp111.Scaffold629   3463201 113 - 33334924 I

a score=0.000000
s ce10.chrX               657197 64 + 17718866 CAACGGAATGACACAGAACATGAATTTTTCTTTCAATACGATTGTCAAATTTCAGCTCAAAAAA
e caeJap4.Scaffold54      151722  0 +   258924 C
e cb4.chrX              21138134 52 - 21540570 I
e caeSp111.Scaffold629   3463201 113 - 33334924 I
e caeRem4.Crem_Contig24   453121 14 -  1162296 I

a score=-3705.000000
s ce10.chrX               657261 405 + 17718866 GGGAAAAAGTGACAAAGTGATTTTTTAACAACTAAAAAAATATACATCTTTTTGACGAGCAAAGTATGTATATGGTGGAGGGTTACTTCCAGACGAGTCCCATTTAAAACTTGTGATTTCACTAATCTATCACAAAAATTGAAACATCCACTGAATTTTCAAACTTTAATTTTTTCAATTTGTATTTTTTTCACAATTTTCTAGTACTGCAGAAGTGCTCCAAAAGTTACTTTCTATGAGACAAACATAATAAAAATTTCTGAGTATTTTTTTTGTT-TTATTTAAAAAACGTGACAAATTGACTTCCACCTTTAACTTCGAAACATTAGTTTAAAATATATCAGTTACAATGTTTCATTAGAACAAAAAATTCGAGTTATAGAATTTCAATGCGAAACGAATACA
s caeRem4.Crem_Contig24   453135 209 -  1162296 AGGAAAGA-----ACATTGATT-------AATTAAA--------------------------------TAGagagtgga------catccggac----------tgaCAATTGGACAGTCACCAGTGTTAAATAAGAATTACAG------------------------------------------------ATAATTTACTAAT-------------TTCA----------TTTATGAAGAAACTATAGTGTGTCTTTTTAAGTGTTTTGTTCATTAGTATTCTAATAGC---------------------TTTATTTTAtaaca--aattgaaaatgtgCATATTATCATG-------------------------------------------AATGACTGCT
i caeRem4.Crem_Contig24 I 14 C 0
e caeJap4.Scaffold54      151722   0 +   258924 C
e cb4.chrX              21138134  52 - 21540570 I
e caeSp111.Scaffold629   3463201 113 - 33334924 I

a score=-750.000000
s ce10.chrX               657666 6 + 17718866 -ATACCT
s caeRem4.Crem_Contig24   453344 2 -  1162296 AA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463314 6 - 33334924 -ATCTCT
i caeSp111.Scaffold629  I 113 C 0
e caeJap4.Scaffold54      151722 0 +   258924 C
e cb4.chrX              21138134 52 - 21540570 I

a score=187891.000000
s ce10.chrX               657672 751 + 17718866  
s cb4.chrX              21138186 910 - 21540570  
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig24   453346 726 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463320 657 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      151722 992 +   258924  
i caeJap4.Scaffold54    C 0 I 20

a score=-2558.000000
s ce10.chrX               658423 22 + 17718866 ATTATCAATCATACTTCAACAC
s cb4.chrX              21139096  9 - 21540570 -------------TTGTAACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   454072 16 -  1162296 -----caatc-tcttttttcat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463977 10 - 33334924 ------------cttctcactt
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      152714 20 +   258924 I

a score=38150.000000
s ce10.chrX               658445 292 + 17718866 TTTCA---TTTAAGTACTAACGTAATTTATTTTCCATTTTATTGTTTTTATTGAATAAAACAATT------------------TTCAAAAAAAAAGTGGCAATTAATTTATTTTATCCCG--AACCTGTTTTAAACTGTCTTGATTGTTCAGTTCC-------AGTCATTTTAATATGCTT-ATTACAAATTTTTTG---------------ATATTATAGTACT---AAAATGCGTCTTTGATTTGTTCGAATGGCCTCAAAGCCAAGTCAACCGGTAAGTGAATACTATATTTGTGAAGACCTTCGAGAAGTGTGTAGAGTTCCTCACAGCCTGAAAAT
s cb4.chrX              21139105 242 - 21540570 TCGAA---TTGAAATACTAACcatatttattt---attat---------------taaAATAATT--------------------------------------ATGCGGATTTGGCTCAA--AACCTGTTT------GTCATctatgaatatttttcaatgaaaataat--CAATATGC---ATC---------------------------ATCTTGCACCTGTTTCAAAACGCGTCCTTGATTTGTTCAAAAGGCCTCAAAGCCAAGTCGACCGGTAAATGGATACTGTATTTGTGCAAGCCTTCCAGCAACGTGTAGAGTTCTTCGCAACCTAATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   454088 289 -  1162296 ctgcACCTTTTATTAACTAACATAATTTATTA---AGact---------------taaaataaataat-----------tcttcccaaaaaaagagTGGCAA-AAGTTGAATTGGCCCGA--AACCTGTTT------GACATGTTCAATTAATTTC-------AATAGT-ATAATATGC---GTTTTAAATTTGATATTATGACTGTTATCAATTTTGCACATCT---AGAATGCATCTTTGATTTGTTCGAATGGTCGTAATGCCAAGTCTACCGGCAGGTGGATACTGTATTTGTGTAAGTCTTCGAGAAGTGTATAGAGTTCTTCACAACCTGAAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3463987 254 - 33334924 tt------cttcattacTAACACTATTTATTT-ccatatt---------------tatttcaaat----------------ccgacgaaaaaatattaaaac-gTGGCAACACAACTCAAAGAACCTGTTT-------TCATGT-CAATTGTTATG---------------CGATATTA---ATCAGAAACTCa------------------gtttagaattttc---aaaatgcatCTTTGATTTGTTCGAAAGGCCGTAATGCCAAATCTACTGGAAGATGAATACTATACTTATGAAGGCCTTCAAGGAGAGTATAAAGCTCTTCAcaacctgaaaa-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      152734 245 +   258924 -------ttttaaat---------atgtattt---ataaa---------------taaattatttattataTGCATTTGTCATTAtgaagaaacaaaaataa-aa------------caa--aaaccgTAT--------------TACCCCGCATC-------AAAGTG--CAAAATACCTAATGACAAAAC--------------------GTTTT-CTCTGTC---AAAATGCATCCTTAATTTGCTCAAATGGCCGTAACGCTAGATCCACTGGCAAATGAACGCTGTATTTATGCAGGTCTTCTAGAAGAGTATACAGCTCTTCACAGCCTgaaaat
i caeJap4.Scaffold54    I 20 I 169

a score=-117.000000
s ce10.chrX               658737 2 + 17718866 AA
s cb4.chrX              21139347 2 - 21540570 Gt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   454377 2 -  1162296 GA
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54      152979 169 +   258924 I
e caeSp111.Scaffold629   3464241 0 - 33334924 C

a score=32051.000000
s ce10.chrX               658739 112 + 17718866 CGAGTTGAAAATGGAA---AAAAGAGA---------------AGATGGTACCCACCTGTTCTTGCAACATAACTCCAAGAGTTGTAGCACATTTCGACAACTTGTCGGGTTCGAAATATGATCCTGCAAA
s cb4.chrX              21139349 112 - 21540570 tttatta-----tcaa---aaaagGATTAGGAAACAAT----AAAC------TACCAGTTCTCGCTACGTAACTCCATGAATTGTAACACATCTCGACGACCTGTCTTGTTCGGAAGATTATTCTAAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   454379 116 -  1162296 ATTACT------TCAA---GAGGGTAT--GTTACCAATTTCAAAAC---GCTTACCAGTTCTAGCAACATAACTCCAAGAGTTGTAGCACATTTCCACAACTTGTCGCGTTCGGAAGATTAtcctaaaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3464241 110 - 33334924 ------------ataa---aaactaatcTTCCTTTGTT----AAATTTTGTTTACCCGTCCTAGCCACATAACTCCATGAATTGTAACACATTTCCACTACTTGTCGGGTACGGAAAattattctggaa-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      153148 113 +   258924 -------------caagtcgattgaaatcacAATAAGT----GAGCTTGGCCTACCAGTCCTAGCAACATAGCTCCAGGAGTTGTAGCAAATTTCCACGACTTGCCTTGTTCGGAATATTATTCTGAAAA
i caeJap4.Scaffold54    I 169 C 0

a score=-2350.000000
s ce10.chrX               658851 16 + 17718866 CAAA---TTTAATTAGTTT-
s cb4.chrX              21139461  9 - 21540570 CAGAGTTGT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   454495 20 -  1162296 tgaaatgttttattcagtTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3464351 17 - 33334924 --aaaggtTTTATTAGGTT-
i caeSp111.Scaffold629  C 0 I 18
e caeJap4.Scaffold54      153261  0 +   258924 C

a score=100.000000
s ce10.chrX               658867 1 + 17718866 G
s caeRem4.Crem_Contig24   454515 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54      153261 0 +   258924 C
e cb4.chrX              21139470 0 - 21540570 C
e caeSp111.Scaffold629   3464368 18 - 33334924 I

a score=704.000000
s ce10.chrX               658868 13 + 17718866 GACATTTGAAATA
s cb4.chrX              21139470 13 - 21540570 AACATTTAAAGCA
i cb4.chrX              C 0 I 9
e caeJap4.Scaffold54      153261  0 +   258924 C
e caeSp111.Scaffold629   3464368 18 - 33334924 I
e caeRem4.Crem_Contig24   454516  0 -  1162296 C

a score=0.000000
s ce10.chrX               658881 239 + 17718866 AGGGCAATTGACGGGTATTAATATATGTAGCAGCTCAAGGATTTGATATAAAATAATTGGTTTTTTGTTTGAGATCACCCTAAATAAATGAACTCGTACGAGATTATTAGCAATAATACTAACAAGTTAATTAATGTCTTGCAAAGTTCTAATAGGTAAAACATCAAAATTCTTATGGAATTTCAAGCGGATAAAGTCCTTGTCAAGATGAATATTTATTTCAGACGTGTTTCTACATT
e caeJap4.Scaffold54      153261   0 +   258924 C
e cb4.chrX              21139483   9 - 21540570 I
e caeSp111.Scaffold629   3464368  18 - 33334924 I
e caeRem4.Crem_Contig24   454516   0 -  1162296 C

a score=-1281.000000
s ce10.chrX               659120 76 + 17718866 TTCTGAGGTTTTCAGTCTAGGAGGAACGGCATGATCTAAAATTGCACTGTATTTTGGAGTGCGTCTTATTTTTTGT
s caeJap4.Scaffold54      153261 26 +   258924 TTC----GTTTTAACTCTA--------------------------------TTTTAACATGC--------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21139483  9 - 21540570 I
e caeSp111.Scaffold629   3464368 18 - 33334924 I
e caeRem4.Crem_Contig24   454516  0 -  1162296 C

a score=-3480.000000
s ce10.chrX               659196 56 + 17718866 GTACACAAAGTGGTAAACGTATGATCTAAATATTCAAAAGTTGCGCGGTTTTTTTA
s caeRem4.Crem_Contig24   454516 16 -  1162296 GCACACAAAAAGTTAA----------------------------------------
i caeRem4.Crem_Contig24 C 0 I 1
s caeJap4.Scaffold54      153287  4 +   258924 ---------------------TGAC-------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21139483  9 - 21540570 I
e caeSp111.Scaffold629   3464368 18 - 33334924 I

a score=0.000000
s ce10.chrX               659252 16 + 17718866 CGAAAAAAAGACTTCC
e caeJap4.Scaffold54      153291  0 +   258924 C
e cb4.chrX              21139483  9 - 21540570 I
e caeSp111.Scaffold629   3464368 18 - 33334924 I
e caeRem4.Crem_Contig24   454532  1 -  1162296 I

a score=280171.000000
s ce10.chrX               659268 714 + 17718866  
s cb4.chrX              21139492 738 - 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24   454533 690 -  1162296  
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3464386 686 - 33334924  
i caeSp111.Scaffold629  I 18 C 0
s caeJap4.Scaffold54      153291 726 +   258924  
i caeJap4.Scaffold54    C 0 I 92

a score=-1534.000000
s ce10.chrX               659982 32 + 17718866 GAAGTGAATGTGGGAAATTGAACAATAAAATC
s caeRem4.Crem_Contig24   455223 21 -  1162296 ----------TGGGCAATTTTAATC-AGAATC
i caeRem4.Crem_Contig24 C 0 I 139
s caeSp111.Scaffold629   3465072 22 - 33334924 --------tttagttCATTGTGcaa-agaac-
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      154017 92 +   258924 I
e cb4.chrX              21140230  0 - 21540570 C

a score=96.000000
s ce10.chrX               660014 20 + 17718866 GTGTTTTTTTTGGCAAAAAT
s caeSp111.Scaffold629   3465094 11 - 33334924 ---tttttttcag------t
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      154017 92 +   258924 I
e cb4.chrX              21140230  0 - 21540570 C
e caeRem4.Crem_Contig24   455244 139 -  1162296 I

a score=-26754.000000
s ce10.chrX               660034 167 + 17718866 ATTTTGATAAACCGAACATTAAAATTATATTTGGGAAGTTACATTTTTTGGTCAGTG-------------GTTAGTGCAAAATTTAATTTTGTC---AGT--GCT---AGAACCAAT----TGAAGATTGTTCGTTTCATAATCAAAACTTGAAAAAGTGaaaattaaaattttttataatCAGACAAATAT
s cb4.chrX              21140230  45 - 21540570 ------------------------------------------------------------------------------------------------------GCT----------------TCAA---------TTTC---------------CGGtgtgaaattgaaagaataA-----TCGTGAAGGCAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3465105 108 - 33334924 attatGA---------------------ACTCgg-------catttttgaatca-----------------------------------tgATC---ACTCGGCTCACGAAATCTGC----TAAA---------TTTCA-----AACAACTAATGAAGcctaatttgaaaaatgctgTGTTTGCAAAGTTTT
i caeSp111.Scaffold629  C 0 I 10
s caeJap4.Scaffold54      154109 167 +   258924 attgccgtcacatgcgctttcaaattata------acgttacatgtttctgtgcatgcgccgaaacttactacaattcaaaaaaaaatttcattgaaaac--gca---tgaaacaattatgttaa---------ttcaacgaaaagtgtttctaatcgactgatt--aatttttctttaagcggaaaat---
i caeJap4.Scaffold54    I 92 C 0
e caeRem4.Crem_Contig24   455244 139 -  1162296 I

a score=29046.000000
s ce10.chrX               660201 349 + 17718866 CCGAAACCCAAAGTTCTTGT-AGTATGTC-----------------AAAAACACACATCATTAAAGTTTGGCTCAATAAATGTGTGCAAATACGTGATCTGTATCTTGTGGTTTGAGCAAACACGTATAGTGGTG------TTTTTTGCTCACATGTTTGTATCAAACTTTTAATAAATATTTTTATCGATTTAAAAAGCGTAAATATTTTTCGATCACAAACTTGAGAAACTAACCCATAATGATTTCCTTTCAAAGTATTTTTCAGCTGATTTTTCTGAAACCTTCCTGTTGAGCACCCGATGATTCCACTTAAAAATGATCCGTTTTTAGATTTGGCACCAGACAGCGGCGTTGATCCCATGCTCTGAA-A
s cb4.chrX              21140275 214 - 21540570 --------TGATACCCATGACGTGATGCg---------------------actttgaatatt----ttggg-------------------------------------------------------------------------TTTGTGGACGAG-------------------------CACTGGAGTTTTTACAATG-----------------------------AATTTACCCATAATGATTTCCTTTCAGAGTATTCTTCAACTGGTTTTTCTGAAACCTCCCTGTTGAACAACCGATGATTCCACTCAAAAACGACGTATTTTTAGATTTAGCACTTGCTAAAGGAGTCGATCCCATACTCTGAATT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   455383 225 -  1162296 CGGAAACGAGAAATTTATGA-GTTATGTA-----------------TAATACATACATCACT----TTCAA-------------------------------------------------------------------------TCTGCAAATCAA-------------------------TTTTATCAagtcaaaattga----------------------------aacttaCCCATAATGGTTCCCTTTCAgtgtatttttcagctgattctTTTGGAATCTTCCTGTTGAGCAACCAATTATGCCACTGAGAAACGAgttgtttttggattttgcACCGGAAAGTGGAGTGGAGCCCATACTCTAAA-A
i caeRem4.Crem_Contig24 I 139 I 2
s caeSp111.Scaffold629   3465223 298 - 33334924 --GGAACAGGAAGTTGATTTAATCACGTGTGTCAGAGGGATTAAAATGATGAATAGGTTATT----TCtag-------aaagtttcgaaaaataagcttt-----------------------------------------ttcttttccgacgag----aaaaaaacttc------atttttttgtattgtaaaaaaacagaaa-----------cgtGGACTTCGATGACTCACCCATAATGGTTCCCTTTCAAAgtattttttagttgatttttctggaatcgTCCTGTCGAACAACCAATGATGCCGCTGAGAAAGGAAGTATTTTTTGCTTTGGCTCCGGATAAAGGAGTTGAACCCATACTCTGGA-A
i caeSp111.Scaffold629  I 10 I 30
s caeJap4.Scaffold54      154276 337 +   258924 ----aacaaaaaattaatga-gatATTTA-GAAACAAAGACCTTAACcataaaacctttttt----ttcga--tgagtagtgcgagggagcgcgtttgctgcggTGCatcgttcaacacaccgtgttgcgtcgcgtggcaacgctttGCTTACACG---------------------CTATCTATCAcaatttggcacactgccaagatttcaGCACCCCATGGTCTGAAACATACCCGTAATGGTTTCCTTTCGGCGTGTTTTTAagttgatttttctgaaaacgagTCGTCGAACAGCCAATTATACCACTAAGGAAAGAcgggttttttgattttgcacCGGATAATAATGTAGATCCCATACTCTA----
i caeJap4.Scaffold54    C 0 C 0

a score=-4766.000000
s ce10.chrX               660550 39 + 17718866 -----------GAAAAAATTGACTA--GAAAATTAGTGAAAAACAACAATGA
s cb4.chrX              21140491 33 - 21540570 -----------ATAAGATTGAACTAATTAAAGTTCGTATGATTC--------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   455610 39 -  1162296 -----------ACAAGAATTAactg--tcatcttcttattttcaatcaatca
i caeRem4.Crem_Contig24 I 2 C 0
s caeJap4.Scaffold54      154613 39 +   258924 aacaatgtttaaaaaaaatgtattt--ttagaTATTGATTA-----------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3465521 30 - 33334924 I

a score=179396.000000
s ce10.chrX               660589 386 + 17718866 -TCATACCCGAACCGGTGTAGTTTGATTCGAATTTTCAGCATTCTCTTTCTGAAGAAAGTTGACAAAACGTTCCAAATCTGTGATCTGAGTCTGAAGTTGGTCTACTAGTTGTCCCTTTTCTTTGAACGGATTGACAAG----------------------------------------------------------TTGCTTCAGAGCATCATCTACTTGCCGTTGTATTTCTGTTTGGTTCATTTTATCTATGTCTAGATTTAACTCGATTTTTTCGCGGAGTTTATCCAGAACGGCTTTCTACAA--------ATTAAAATTCAGC-ATAAACTCTTACTTTTATACAAAC-------------CTGTTTCTTCAAAATGTCAGTACTTGGAAGCTCGCCTTCTCCATTTTCATAGGCAGTCCTTTCCAAGTCTTCTACTTGCTCGCGGAGCTGTTTTAGCAAT
s cb4.chrX              21140524 388 - 21540570 --CTTACTCTGACTGGTGTCGTCTGATTTgaacattcagaattttccttCTGCAGGAAATTCACAAAACGTTCCAAGTCTGTAATTTGGGTTTGCAGCTGGTCTACCAATTGGCCTTTTTCCTTGAATGGATTCACAAG----------------------------------------------------------TTGTTTTAATGCATCATCTACCTGGCGTTGTATTTCTGTTTGGTTCATTTTGTCAATATCTAGAttcagttcaattttttcttggagCTTATCCAAAACAGCTTTCTG-------------TAAAAACGAGC------CTCTATTTTCTTCACGATGCTACGAAAAATACTTGTTTCTTCAGAATATCGATGCTTGGCAATGCTCCTTCTCCGTTTTCATAAGCGGTCCTTTCCAAATCTTCCACTTGCTCCCGTAGTTGTTTGAGAAgc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   455649 343 -  1162296 -GCATACCCTAACCGGTGTAGTTTGGTTAGAATTTTCGGCGTTctctttttgcagaaaattgacGAATCTCTCCAAATCTGTGATTTGTGTTTGCAGTTGATCTACTAGCTGCCCTTTCTCTTTGAATGGATTCACAAG----------------------------------------------------------TTGTTTCAATGCGTCATCCACATTACGTTGTATTTCTGTTTGATTCATTTTGTCAATATCCAGGTTCAACTCAATCTTTTCTTGGAGTTTGTCAAGAactgcttt-----------------------------------------------------------------ttgtttttttagaaTATCCGTGCTGGGCAGTGCACCTTCTCCATTCTCATAAGCTGTCCTTTCCAAGTCTTCCACTTGTTCACGAAGCTGTTTCAGTAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3465551 343 - 33334924 -TCCTACCCTGACTGGTGTGGTTTGGTTAGAGTTTTCCGCGTTCTCCTTCTGAAGGAAATTGACGAATCGTTCCAAGTCTGTAATCTGAGTTTGCAACTGGTCCACtagttgttctttttctttgaaaggGTTCACAAG----------------------------------------------------------TTGCTTTAGAGCATCATCTACTTGGCGCTGTATCTCTGTTTGGTTCATTTTATCAATATCAAGATTTAATTCGATCTTCTCTTGGAGTTTGTCCAGAACCgcttt-----------------------------------------------------------------ctgtttcttcaaaatatctGTGCTAGGTAATGAGCCCTCTCCATTTTCATAGGCAGTTCTCTCCAAATCCTCTACTTGGTCCCTTAATTGCTTGAGCAAC
i caeSp111.Scaffold629  I 30 C 0
s caeJap4.Scaffold54      154652 450 +   258924 GCTTCACCTTAACCGGCGTTTTCTGATTAGCATTTTCCGCATTTTCCTTCTGTAGAAAATTCACAAAGCGCTCCAGGTCGGTGATTTGGGTTTGTAGCTGGTCAACGAGTTGGCCTTTCTCTTTGAAAGGGTTTACAAGCTGAAAGGTTAATATTTGGGGAATATTCCGCTACTAGCCACAAATTCTTAAAACTTACTTGTTTCAAAGCATCATCTACATGTTTCTGAATGTCTGATTGTGTCATTTTGTCAATGTCAAGATTtagttcaattttttctctgaGCTTATCCAGAACTGCtttctaaaaatgaaaatattaaaaGCGATATAGAGCTTTTCAATTATTAAC-----------------CTGTTTTGACAAAATCACTGTACTTGGCAAAGTTCCTTCTCCATTTTCATACGCAGCTCTTTCTAAATCTTCCACTTGTTCCCGAAGCTGTTTTAACAGC
i caeJap4.Scaffold54    C 0 I 130

a score=54374.000000
s ce10.chrX               660975 145 + 17718866 TCTTTTTGTCG------------------------------------------------------------------------TTCATTTTGCTTGTCTAGTACATCATTTCCACTTTCACTTTCACTTCGTAGCCTTTGCAGCTCGTTCATGTCTGTGCAACCCTTGAAAGCAAATTTTTGAAGATCAGAGAGCAACTTCTGGA-------AAAGACATATGA
s cb4.chrX              21140912 180 - 21540570 tttttttgtctgaaa--------------gaTAGTTATA---------------ATTACATCAG--AAAATAGTTGATCACCTTTCGTTCTGTTTTTCTAGCACTTCGTTTCCACTTTCACTCTCACTTCGTAACCTTTGAAGTTCATTCATGTCTGTACATCCTTTGAAAGCAAAGTCTTGTAGCTCCATGAgcagtttctgaa-------------atttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   455992 200 -  1162296 tctttttgcctgaaa-----ataaCACTCGGAAGTTATCTatctctgtttttctgtttttccgg--A------TGTCTTACCgctcattttgtttttccaacACTTCATTCCCACTTTCACTCTCACTCCGTAGCCTTTGCAGTTCATTCATATCCGTGCAGCCTTTGAACGCAAACTCCTGGAGCTCCGTGAGtagtttctgga-----------acatttca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3465894 152 - 33334924 TCTTTCTGCCT------------------------------------------------------------------------CTCGTTTTGCTTCTCCAAAACCTCGTTTCCACTTTCACTCTCACTTCGTAACCTTTGAAGCTCATTCATATCCGTGCAGCCTTTGAAAGCAAAATTTTGGAGTTCGGCGAGCAGGATCTAAAGAAAAGTATGAAAACTTGA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      155232 206 +   258924 ttttcatgtcgcaagtctattTAAAACCCAATAGTAGTA-----------AGATGCTAAgtaagcaaaaaaagaaactaacCTCTCATTTTGCTTTTCTAATACATTATTGCCACTCTCACTTTCACTTCTCAACCTCTGAAGCTCATTCATATCTGTACATCCTTTGAATGCAAAATTCTGCAGCTCCTTTATCAATGTCTAAA-------CCGAATTTATTA
i caeJap4.Scaffold54    I 130 I 30

a score=-3764.000000
s ce10.chrX               661120 32 + 17718866 GAT-------------GAGGCAACTGAGCCTAAT-----------AGCTTACTAAT
s cb4.chrX              21141092 36 - 21540570 ----------------gaaata----gatCTAATCAGTTTGGATTTCTATACCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456192 39 -  1162296 tattctttttgCCCCCGAGGCA----AGTTTAAT-------------TATACCTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3466046 24 - 33334924 ----------------AAGAAC----AACCTGAA------------ACTGACTTCT
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155438 30 +   258924 I

a score=85189.000000
s ce10.chrX               661152 152 + 17718866 CTATCGCTTGGGTCCGCTTCATTCATTTGCTTTATCCGGAACTGCACCTGCGCAAAATGGGAGCTCAGGGAAAATAACGAGTTATTGAGTCGTTCCTGCTCTTCTTCCAATTGTTGTACCCGTAATGCATCGTTTAAGCTTCTAAAAATTGA
s cb4.chrX              21141128 143 - 21540570 CTATCATGAGGCTCGGCTTCATTCATTTGTTTTATCCGAAATTGCACTTGAGCGAAATGAGAACTGAGTGAGAATAATGAGTTATTGAGCCGTTCCTGCTCCTCTTCCAGTTGTTGGACCCGCAGCGCATCGTTCAGGTCTCT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456231 147 -  1162296 CGGTCGTGGGGGTCTGCTTCATTCATCTGCTTTATCCGGAACTGCACTTGAGCGAAATGAGAGCTCAGAGAGAATAGCGAGTTATTGAGCCGTTCTTGCTCTTCTTCCAGTTGTTGGACCCGTAGAGCGTCATTGAGACTCCTGGAA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3466070 143 - 33334924 CTGTCACTGGGATCTGCTTCATTCATCTGTTTGATGCGGAATTGCACTTGTGCGAAATGAGAGCTGAGTGAGAACAAAGAATTGTTGAGTCGTTCCTGTTCCTCTTCAAGTTGTTGGACCCGTAATGCATCGTTAAGACttct---------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      155468 152 +   258924 CTGTCCGCTGGATTAGCCTCATTCATTTGTTTTATTCGAAATTGAACTTGTGCGAAATGGGAGCTTAGGGAAAATAAAGAGTTGTTCAATCTTTCCTGCTCTTCTTCTAGCTGCTGAACTCGTAGAGCATCATTGAAACTTctggaaattaa
i caeJap4.Scaffold54    I 30 C 0

a score=-1432.000000
s ce10.chrX               661304 18 + 17718866 GTTCTGAGTTTATCAGtt-------------------
s caeRem4.Crem_Contig24   456378 32 -  1162296 -----AAGTTTAACATTTGTTACAGAGTTTTGCAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3466213  7 - 33334924 -----aaattta-------------------------
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155620  0 +   258924 C
e cb4.chrX              21141271  0 - 21540570 C

a score=-5583.000000
s ce10.chrX               661322 106 + 17718866 aaaggtagtgcagtcaaatttttttttattgctttaccgaatttcataataaaaatttttgaaaacttctcgaaaaaagttatggaaaaagtcaaaaaatgATTTT
s cb4.chrX              21141271  30 - 21540570 --------------------GTTATATTTGGCTT-----------------ACAAATTGTCGCAACT---------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3466220  56 - 33334924 ----------------aaaagttttttcccTCTC-----------------GAaactcttgaaaaat-------------aatgaagaatGGCGAG----Gttctt
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155620   0 +   258924 C
e caeRem4.Crem_Contig24   456410   0 -  1162296 C

a score=-9835.000000
s ce10.chrX               661428 101 + 17718866 GATGAAATAAAGCATTAAAAATAATTGGACTACATCAATTTAATGAGATATTCAGGATTAAAATTTTTGAACCTACTGTTGCATTGACCACAATTTACACA
s cb4.chrX              21141301   8 - 21540570 ----------------GAAAATAA-----------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3466276  27 - 33334924 gg--------------aaaaatga-------gCCGCAGTTCATTAAGA-----------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      155620  26 +   258924 ---------aa-----taaaataa----------------------------------taatatttttaaatct---------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   456410   0 -  1162296 C

a score=41370.000000
s ce10.chrX               661529 90 + 17718866 AAAAGCTTACCCAATATCATCACTATGACTAGAAGACAACCGAGCACTTTTCCATTCAGTTTCAGACATTGTGTCATCTG-AAAACAATTA----
s cb4.chrX              21141309 85 - 21540570 -----CTCACCCAATATCATCACTGTGACTTGAAGAGAGACGTGCACTTTTCCATTCTGTTTCTGACATTgtatcaacta-aaaaaaagta----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456410 89 -  1162296 AAAAACATACCCAATGTCGTCACTATGGCTGGATGATAGTCTAGCACTTTTCCATTCTGTTTCTGACATTGTGTCATCT--GGAATAATTA----
i caeRem4.Crem_Contig24 C 0 I 196
s caeSp111.Scaffold629   3466303 91 - 33334924 GAACACTAACCCAATATCATCACTGTGACTTGAAGACAATCTAGCGCTCTTCCACTCAGTCTCCGACATTGTGTCATCTGTGTAACACTTT----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      155646 92 +   258924 --tAAGTTACCCTAAGTCATCGCTGTGATTTGAGGAGAGTCGAGCGCTTTTCCATTCTGTTTCCGACATGGTGTCATCTT-AAATTTAATAGGTG
i caeJap4.Scaffold54    C 0 C 0

a score=1638.000000
s ce10.chrX               661619 3 + 17718866 TTT
s caeRem4.Crem_Contig24   456695 3 -  1162296 TTT
i caeRem4.Crem_Contig24 I 196 C 0
s caeSp111.Scaffold629   3466394 3 - 33334924 TTT
i caeSp111.Scaffold629  C 0 I 15
s caeJap4.Scaffold54      155738 3 +   258924 TTT
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21141394 0 - 21540570 C

a score=-4388.000000
s ce10.chrX               661622 18 + 17718866 -------CAGAAAACAAAAATCACT
s cb4.chrX              21141394 16 - 21540570 ---------taaaaacgCAGTTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456698 12 -  1162296 -------CTTAGATAA------AAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      155741 20 +   258924 GGGTGGTTTTAAATGGAAAC-----
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3466397 15 - 33334924 I

a score=59382.000000
s ce10.chrX               661640 127 + 17718866 TTTA-----ACTCACAAAAATCCAATCCATCCACAATTTCTTTTGAATCTTCGGACGCTCGCTTTTTTAAGGATTGACCCAACTCTACTAGCAAGTCGCTGGCTTCCAACTCGTTCATCATTTTGG---------CAAAAT
s cb4.chrX              21141410 128 - 21540570 -TTAAAAACACTTACAGAACTCCAATCCATCTCCAATTTCCTTTGAATCCTCTGAAATGcgtttttttaatgattgaCCCAACTCAACCAGCAAATCGCTGGCTTCCAATTCGTTCATCATCCTGA---------AAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456710 126 -  1162296 -TCA-----ACTCACAGTAATCCAATCCATCTCCAATTTCTTTCGCATCTTCCGAAACACGTGATTTCAAGGATTGGCCCAACTCCACTAACAAATCGCTTGCTTCCAACTCGGACATCATCTTTA---------AAGGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3466412 133 - 33334924 ttga-----actCACAAAAATCGAGCCCGTCTCCAATCTCCTTTGAATCCTCTGATACAcgtttttttaatgattgGCCCAGTTCCACCAATAAGTCACTGGCTTCCAGTTcgttcatcatttttctctgtttttgag---
i caeSp111.Scaffold629  I 15 C 0
s caeJap4.Scaffold54      155761 127 +   258924 GTGA-----ACTTACAGAAGTCTTGATCATCATTAACATCTTTAGATTCTTCTGAATTGCGGGATTTCAAAGATTGTCCCAACTCCACTAGCAAATCGCTTGCTTCCAATTCGTTCATCATTTTTG---------CAGCAT
i caeJap4.Scaffold54    C 0 I 1030

a score=-4126.000000
s ce10.chrX               661767 158 + 17718866 TTCTGGCACCT---------GAAACAATACGTTGaaaaaaaattaataaaaaaaataat--------------tatatatt---attaCGAATGA------ATAACACGTACATTTTCAAAATTTTGTTTGAAGTGATGATTATTTTGAGATTG------TTAAT---------------TGAAAGCTGAACAAATTCCA---TTTATTGAAAC
s cb4.chrX              21141538 106 - 21540570 CACTGAAATAG-----------------------AAGAGAAATGC-----------------------------------------AAAGAGAAA------ATCGAACGcgtgttttc------------gaa---aataatatttttagaatt---ttttcaat-----------------aaagcTGAACAAacgatt---tttattgaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   456836 156 -  1162296 TCCTGagatttgc-------aacatttttttttcaatataaattcataaaactt-------------------tttttatt---aaaaaggACGA------GACAAGCGTTCGCTC--------------------AATATTATATTtggaattgaattttcaataaaatgaaaaataaatgaaagcTGAACAAATTGTG---TTCATTGAAAC
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3466545 191 - 33334924 ACCTGAAATTTAccttacaaaaaatttcaatttagtAAGAAACGAAGGAGAATCAGATCTTGGTTAAATATAGTAtgtatttcgaaaaagcaCAAAAATCGGACAGGTGTTCGTTTTC--AGTTATATTGGAA---AATATTAT-TGGAGAATC--ACATTGAAT---------------TAAAAGCTGAACAAATTGTGTGATCCATCGAAAC
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I

a score=-1415.000000
s ce10.chrX               661925 13 + 17718866 AAAATGAAAATGA------
s cb4.chrX              21141644 10 - 21540570 ---atGAGCACAA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3466736 17 - 33334924 --ATTTCGGACAATAGTGA
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I
e caeRem4.Crem_Contig24   456992  7 -  1162296 I

a score=46973.000000
s ce10.chrX               661938 387 + 17718866 AAAATGGGAGTGGACAAATAAATTACATCACGAAACATTAAAAACAATATATACTTTACT-TTTT---TTTCATTTTCCAATTTCCGTTTTTCTGC----------------------------TAAAAGGGTTTTCAGAGAAGAGAAAAACTGAAAAAGAAAAAGATGACGTATGCTTTTAAAAAGGATT---GCCGGACAAAAAAGGGGAAAAAGAAGGAGAAAAATAACGGAGC-----ACGCAAGAGAGCAGAGAAATGAGGCAACAAACTGCGTCTCGTGT----TCTTCATGCACTCTCAC--GTCGTCGCTCTTGGTTATCGACCG-CCATGGGTAA---------------CGTGGAGAAAGA-------------CGGAAGAAG----------CATGGAGAAGGGACG-----CTTTTAGTCTTGGAAATGACGAACGAAATCCTTGTGGGCGGAC------ATAATTATGAG
s cb4.chrX              21141654 427 - 21540570 ----------TGGGTgagt--atggaaaaaaaatgcataaaagCAAAAATGGAAACCACAGTTCC---CTTGATTTTcatttctccgttttttcca-------------CTCTTCAATAATGAGGC-----TTTTCCAGCCAAGGGAAA----GCGAAAGG-AAAGATGACGTGTGC-TTTCGAATAGATTGCCGCTGCTTCAGAAAGGGAgacgagaa--aagaaaacatcgGAGC-----CAGCTAGGGAGCAGAGAAATGAGACAAAAACCTCAGTCTCCACT---ATTTCTGCTATATTTCACCATGCGTCGCTCTTGGTTATCGAGCGGCTAGgcccaaaaatggaaaagagagCATGAAGAAGAAGGGTCGAAGAAAAAGCAGGAGGCAACGCAAAAGAAGATGGAGTGACGGCGCATTTTTAGGCAT-GGAATGACGAACAAATTTCACGTGGGTGGAT------ATAACTAGAAG
i cb4.chrX              C 0 I 495
s caeRem4.Crem_Contig24   456999 395 -  1162296 ------ACAATAGGAGAATGAATGCTatagaaaaactggaaaaataatacaaaaactacactttctattctaaatttcaaatttccgtttctagaa-------------------aaaaaagaggaaagggCTTTTCAG---AGAAGAA----GCGAAAGGAAAAGATGACGTATGCTTTTCAAATGGATT---GCTGCcccaaaaagggaaaaagaaa--gggaaaatATCGGAGC-----AAGCAAGGGAGCAGAGAAGTGAGGC-ATTCTCTGAGTCTCCTTC---ACTTTCTTCCTATTTTAT--TTCGTCGCTCTTGGTTATCGAGCGACGACGGCAAA---------------Cgtggagaaaaa----cgaaaagaagggaagacg---------agaagaagaagggact-----cttttagaaat-gaaatgacGAACGAAATCCTTGTGGGCGGAT------ATAATTATTAG
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3466753 390 - 33334924 ------------AATGACT--ATTGTGGTAGAAAACAgg-------atacaaaaactaca-ttgC---TCgccatttccaatttccgtttgagagaaaatggtCGTCGtcttttagagaaaaaagaaagggcTTTTCAGc--aggaaaa-------------agagatgacGTATGCTTTTCGAATGGATT---GCTGGCCCaaaatggagaagggg----ggaaaaataacagagcacaagaaaggggggagcagagaaaaaaggg---tgtCTCTGTTGCCTCTTAGCTTGTTTTGCTCTCTCAT--TTCGTCGCTGTTGGTTATCGAGCGACGAGACGAAA---------------TGTAGAGAAAAA-----------GGCGGAAGATG---------GAAGGAATGAGGGAca-----cttttagaaat-gaaatgacgAACAAAATCCGAGTGGGCGGATATATACATAATTATGAG
i caeSp111.Scaffold629  C 0 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I

a score=-1387.000000
s ce10.chrX               662325 27 + 17718866 AGCTTTTTCGACATGGAGG-GGTTTAAT-----
s caeRem4.Crem_Contig24   457394 24 -  1162296 ---------AATATGAACATGATGTAGTTAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3467143 16 - 33334924 -----------CATCGAAA-GACTTAAT-----
i caeSp111.Scaffold629  C 0 I 1219
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081 495 - 21540570 I

a score=273.000000
s ce10.chrX               662352 3 + 17718866 TTT
s caeRem4.Crem_Contig24   457418 3 -  1162296 TTT
i caeRem4.Crem_Contig24 C 0 I 257
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081 495 - 21540570 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I

a score=0.000000
s ce10.chrX               662355 1527 + 17718866  
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081  495 - 21540570 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I
e caeRem4.Crem_Contig24   457421  257 -  1162296 I

a score=7322.000000
s ce10.chrX               663882 227 + 17718866 CCATCAAATAATCTAACAAATACTATTTCAAAAATA------AAAATA---GTCGATGAG-----CTAACTGTGGAT--GCACAAGACTGACCAGTAAAATGGGCGAAGCAAACAAATTCGAGAGAGGAGAAAGACAAAAATAAACGG-----TTTTTTCGTTC--TTTGTTTGTATATTGTCAAGCTTCCCCGTCTCTATTTACGGAAAAGCTGGACAGTTGCGCATAGGTTTCTTGCGACACTTCCGG
s caeRem4.Crem_Contig24   457678 229 -  1162296 ccatctaaaaacacaagaaat----tctcaaaattatgagCGAAAATACGAATCGATGAGGTACTCTACCCTCGAACTAGCAAAAGACTGACCAGTAAAAATGGAGGAGCAAACAGATTCGAGAG----GAGTGACAAAAATAAAcagttcctttttttccttcgTTTTGTTTGCATATTGTCAATC-TCACCGTGCCTATTTACGGA-------GACTATTGCGCA---GTTTTTTGGG--ATTTCCGG
i caeRem4.Crem_Contig24 I 257 I 291
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081 495 - 21540570 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I

a score=0.000000
s ce10.chrX               664109 648 + 17718866  
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081 495 - 21540570 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I
e caeRem4.Crem_Contig24   457907 291 -  1162296 I

a score=1129.000000
s ce10.chrX               664757 32 + 17718866 AATAAATATGAGGCTTATTTGTGACGGAGAAA-----
s caeRem4.Crem_Contig24   458198 35 -  1162296 AATAAATACGGTGCTTATTTGT--CGGATAAATGCAC
i caeRem4.Crem_Contig24 I 291 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I
e cb4.chrX              21142081 495 - 21540570 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I

a score=433.000000
s ce10.chrX               664789 10 + 17718866 AAACGGTCAC
s cb4.chrX              21142576 10 - 21540570 AAACAATCGT
i cb4.chrX              I 495 C 0
s caeRem4.Crem_Contig24   458233 10 -  1162296 GATTAGTGAT
i caeRem4.Crem_Contig24 C 0 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I
e caeSp111.Scaffold629   3467159 1219 - 33334924 I

a score=14491.000000
s ce10.chrX               664799 23 + 17718866 TCATTTTTGATGAGGTCTTGTAT
s cb4.chrX              21142586 22 - 21540570 T-ATTTTTGATGAGGTCTTGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   458243 23 -  1162296 TCATTTCTGATGAGGTCTTGTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3468378 23 - 33334924 TCACTTCTGATGAGGTCTTGTAT
i caeSp111.Scaffold629  I 1219 C 0
s caePb3.Scfld02_62         1011 23 +   783054 TCATCTGTGATGAGGCCGTGAAT
i caePb3.Scfld02_62     N 0 C 0
e caeJap4.Scaffold54      155888 1030 +   258924 I

a score=86480.000000
s ce10.chrX               664822 96 + 17718866 AATTAGCTCGACGCAGTGCCAGATCGCCAATTGGGTAATGAAGCCAATTGATAACTCCAATGACATCTTCATTTGTAACGTCATCCGGTATCTGGA
s cb4.chrX              21142608 96 - 21540570 AATTAGCACGACGAAGAGCCAAATCGCCGATTGGGTAATGAAGCCAATTGATAACTCCAATGACGTCTTCGTTGGTAACATCATCTGGTATCTGAA
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig24   458266 96 -  1162296 AATTAGCACGACGGAGGGCCAAGTCGCCGATTGGGTAATGAAGCCAATTAATAACTCCAATGACGTCTTCATTAGTGACATCATCTGGtatctaaa
i caeRem4.Crem_Contig24 C 0 I 37
s caeSp111.Scaffold629   3468401 93 - 33334924 AATTGGCACGGCGCAAGGCCAAATCACCAATCGGGTAATGGAGCCAATTGATAACTCCAATGACGTCTTCATTAGTGACATCATCCGGGATCT---
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_62         1034 93 +   783054 AATTAACACGGCGTAACGCCAAGTCCCCAATTGGGTAATGAAGCCAATTTATGACGCCAATAATGTCTTCGTTGCTGACGTCATCTGGCATCT---
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold54      156918 96 +   258924 AATTAGTGTGCCGGAAGGCAACATCTCCAATTGGATAGTGGAGCCAGTTGATCACTCCCAGTACGTCATCAGTGGTGACGTCATCTTGTATCTGAA
i caeJap4.Scaffold54    I 1030 C 0

a score=0.000000
s ce10.chrX               664918 2 + 17718866 GA
e caePb3.Scfld02_62         1127 2 +   783054 I
e caeJap4.Scaffold54      157014 0 +   258924 C
e cb4.chrX              21142704 32 - 21540570 I
e caeSp111.Scaffold629   3468494 2 - 33334924 I
e caeRem4.Crem_Contig24   458362 37 -  1162296 I

a score=-10507.000000
s ce10.chrX               664920 98 + 17718866 ------ATATACAAAGTtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatGGACTATTGACGTA-------
s caeSp111.Scaffold629   3468496 31 - 33334924 ------AAGTAGAACATTTTTGACGCGAC---------------------------------------------------------------ATTCTTGA-----------
i caeSp111.Scaffold629  I 2 I 2
s caePb3.Scfld02_62         1129 31 +   783054 ------AAACCTATCATTGTACATGCCTT---------------------------------------------------------------TTTACTGA-----------
i caePb3.Scfld02_62     I 2 I 2
s caeJap4.Scaffold54      157014 44 +   258924 ATAAATACATAGAACAATAcgactttctt---------------------------------------------------------------ttttttgt----tgaaaaa
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21142704 32 - 21540570 I
e caeRem4.Crem_Contig24   458362 37 -  1162296 I

a score=0.000000
s ce10.chrX               665018 4 + 17718866 ATTT
e caePb3.Scfld02_62         1160 2 +   783054 I
e caeJap4.Scaffold54      157058 0 +   258924 C
e cb4.chrX              21142704 32 - 21540570 I
e caeSp111.Scaffold629   3468527 2 - 33334924 I
e caeRem4.Crem_Contig24   458362 37 -  1162296 I

a score=118007.000000
s ce10.chrX               665022 152 + 17718866 CTG-----ACCTCGGTAGAGCTTGACAATGTGATGAATGTGCACAAAAGAACAATTGCGATGACAATTACAGCCACAGCTATAGTGCAGAAAAGAGAAAGAGCGAGAAGAGATGACCGGGAAACTCTCCAGACAGAGGAGCCAATGACACACTGAAA
s cb4.chrX              21142736 152 - 21540570 CTA-----ACCTCTGTTGAGCTCGACAATGTGATGAATGTGCAGAGAAGAACAATGGCAATGACGATCACAGCAACGGCAATGGTGCAGAACAAAGAAAGTGCGAGAAGAGATGAACGAGACACTCTCCAGACAGATGTTCCAATGACGCACTGAAA
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig24   458399 152 -  1162296 CAA-----ACCTCGGTGGAGCTTGACAAAGTGATGAATGTGCAGAGAAGAACAATGGCAATGACAATCACCGCCACAGCTATAGTGCAGAACAATGAGAGAGCCAGAAGAGACGAGCGAGAGACTCGCCAAACCGATGAGCCAATGACGCACTGAAA
i caeRem4.Crem_Contig24 I 37 C 0
s caeSp111.Scaffold629   3468529 152 - 33334924 CTG-----ACCTCAGTTGAGCTTGACAAAGTGATGAATGTGCACAAGAGAACAATGGCGATGACAATCACTGCGACAGCGATAGTgcagaagagagaaagagcaagaagagagGAACGCGACACTCTCCAGATTGATGAGCCAATAACGCACTGGAa
i caeSp111.Scaffold629  I 2 I 126
s caePb3.Scfld02_62         1162 157 +   783054 TTGTACGAACCTCAGTCGAGCTAGACAGCGTGATGAATGTACACAGAAGAACAATGGCAATGACAATCACCGCCACAGCAATAGTAAAGAACAAAGATAAAGCAAGAAGAGAAGAACGAGTAATTCTCCAGGCGGATGAACCAATGACACACTGGAA
i caePb3.Scfld02_62     I 2 I 1
s caeJap4.Scaffold54      157058 146 +   258924 caa-----ACCTCTACTGGTTCAGAAAAGAAGATGAATGCACATAAGAGA------GCTATGAAAATCACTAATAcagaaataacaataaaaagaagaagcgCTAACAGTGTAGAACGGGAAATTTTCCATATCAAGGAGCAAACGATGcactgaaa
i caeJap4.Scaffold54    C 0 C 0

a score=964.000000
s ce10.chrX               665174 2 + 17718866 TT
s cb4.chrX              21142888 2 - 21540570 TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   458551 2 -  1162296 TT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62         1320 2 +   783054 TT
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold54      157204 2 +   258924 tt
i caeJap4.Scaffold54    C 0 I 49
e caeSp111.Scaffold629   3468681 126 - 33334924 I

a score=-2823.000000
s ce10.chrX               665176 5 + 17718866 G---TATT
s cb4.chrX              21142890 1 - 21540570 A-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   458553 1 -  1162296 G-------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62         1322 4 +   783054 GATT----
i caePb3.Scfld02_62     C 0 I 49
e caeJap4.Scaffold54      157206 49 +   258924 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I

a score=-232.000000
s ce10.chrX               665181 9 + 17718866 AATGAAGAT
s cb4.chrX              21142891 2 - 21540570 -AT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   458554 8 -  1162296 -ATGAGGAT
i caeRem4.Crem_Contig24 C 0 I 329
e caePb3.Scfld02_62         1326 49 +   783054 I
e caeJap4.Scaffold54      157206 49 +   258924 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I

a score=-6991.000000
s ce10.chrX               665190 746 + 17718866  
s cb4.chrX              21142893 424 - 21540570  
i cb4.chrX              C 0 I 10
e caePb3.Scfld02_62         1326  49 +   783054 I
e caeJap4.Scaffold54      157206  49 +   258924 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I
e caeRem4.Crem_Contig24   458562 329 -  1162296 I

a score=0.000000
s ce10.chrX               665936 25 + 17718866 TCGTCACGCTACATTTTTTGTACTG
e caePb3.Scfld02_62         1326 49 +   783054 I
e caeJap4.Scaffold54      157206 49 +   258924 I
e cb4.chrX              21143317 10 - 21540570 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I
e caeRem4.Crem_Contig24   458562 329 -  1162296 I

a score=-32.000000
s ce10.chrX               665961 21 + 17718866 AATATTGCAAAATTGATTGT--G
s cb4.chrX              21143327 23 - 21540570 aatttaaaaacatttacTTTCAG
i cb4.chrX              I 10 C 0
e caePb3.Scfld02_62         1326 49 +   783054 I
e caeJap4.Scaffold54      157206 49 +   258924 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I
e caeRem4.Crem_Contig24   458562 329 -  1162296 I

a score=1026.000000
s ce10.chrX               665982 37 + 17718866 ----ACTTAAAAAATAATCACACCTATAAAATAAGCTAAAA
s cb4.chrX              21143350 33 - 21540570 ATTTATTCGAAGGATA-------CTAAAAAACAACCTC-AA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62         1375 32 +   783054 ----attcgaaaaaaaat-----cttcaaaacaatttctga
i caePb3.Scfld02_62     I 49 C 0
e caeJap4.Scaffold54      157206 49 +   258924 I
e caeSp111.Scaffold629   3468681 126 - 33334924 I
e caeRem4.Crem_Contig24   458562 329 -  1162296 I

a score=45.000000
s ce10.chrX               666019 5 + 17718866 CACAA
s cb4.chrX              21143383 5 - 21540570 AACTG
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_62         1407 5 +   783054 tACTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      157255 5 +   258924 CGCTC
i caeJap4.Scaffold54    I 49 C 0
e caeSp111.Scaffold629   3468681 126 - 33334924 I
e caeRem4.Crem_Contig24   458562 329 -  1162296 I

a score=100049.000000
s ce10.chrX               666024 137 + 17718866 ACCTCATAAACACGTTCTCCAACGAATTCCTGGTCATAGTCATCTCTATTAAAAGTTCTTGCGGCCTCTTCTGCCAATAACAAGTTCCGAGTCTCCTGATCATTGTAGAAGTTGGCAACGTTCAAACGCAACTCTGA
s cb4.chrX              21143389 137 - 21540570 ACCTCGTAGACACGTTCCCCAGCAAAAACCTGGTCGTAGTCATCACGGTTAAAATTTCTTGCCGCTTCTTCTGCCAAAAGCAGGTTTCGGGTTTCTTGATCGTTGTAAAAGTTCTCGACATTCAAACGAAGCTCCGA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   458891 137 -  1162296 ACCTCGTAGACACGTTCTCCCACGAAATCTTGATCGTAGTCATCTCTGTTGAATGTTCTGGCTGCTTCCTCAGCCAACAACAGATTCCGTGTCTCTTGGTCGTTGTAAAAATTCTCAACGTTCAAACGAAGCTCTGA
i caeRem4.Crem_Contig24 I 329 C 0
s caeSp111.Scaffold629   3468807 137 - 33334924 ACCTCATAGACACGCTCCCCAACAAAATCCTGGTCATAGTCATCCCGATTAAACGATCTTGCAGCTTCCTCAGCCAACAACAAGTTACGAGTCTCTTGATCGttataaaagttttcaacgTTCAAACGGAGCTCCGA
i caeSp111.Scaffold629  I 126 C 0
s caePb3.Scfld02_62         1412 137 +   783054 ACCTCATAAACACGTTCTCCAGAATTATCATGAATGTTGCTgtcttgattgaaaattctggCAGCTTCTTCAGCCAATATTAAGTTCCGGGTCTCTTCATTATTGTAAAAACTTTCCACGTTCAAACGAAGCTccgt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      157260 131 +   258924 ACCTTGTAAATGTGATCTCCGCCAAATTTATGCTCACAATCATTCGTAATCAGACTTC------CCTCCTCTGCCAAAAGCAGATTTTGAGTTTCTTGATTCTTATTGAAGCTAGTAACATTCAGGCGTAACTCAGA
i caeJap4.Scaffold54    C 0 I 1527

a score=-24976.000000
s ce10.chrX               666161 106 + 17718866 TGCTCTTTTCGGCTT------TACAGTTTGCACATCC------------------TCCGACATTTTC---------------AATAAAAT----------------CTTTCACCTCAAAAAAAAA----------------AGAAAATAGTT---GGACGATCAAAAATGA-CAACAAAAG--
s cb4.chrX              21143526 135 - 21540570 ACGTTTTGAATTGTC---------GGTTTTTCCTTCC------------------TCGGTCATGTTT-------------CAAATGGGTT-TCactgaa-------ttttcatttttacagagtttttttgatagaatGCGTGGAACTCATTGGTAAATGATTGGTAAAGATGAAGGAAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   459028 138 -  1162296 CGATCTTGAATTGTT---------GGTTTTTCCATCT------------------TCCGACATGTTTTCCAGCACTTTCACCAATGAACTACCActaaaaatccgattttcaatACTCCAAAAATCTTT------------Aggagatca-----aaaagaaatgcAAAGA-GACCAAAAACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3468944  91 - 33334924 TGCTCGCCCTTTCTTAACCGCTACAACGTTTCCATCG------------------TCCGACATATCT------------------GGGAG----------------------------CAAAAACGTTT------------AGaagatcac----aaaaaaat---------gaactaaa---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         1549 104 +   783054 ttcgtttttcttctt---------actGTTTTCCTTGCTCATCATTATTAGTACTTTCGGTatacct------------------g---------------------------------aaaaaagttc------------atgaaacaacttg-gaaaaaatc---agGA-CAACTGAAG--
i caePb3.Scfld02_62     C 0 I 293
e caeJap4.Scaffold54      157391 1527 +   258924 I

a score=546.000000
s ce10.chrX               666267 1 + 17718866 T
s cb4.chrX              21143661 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   459166 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3469035 1 - 33334924 t
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         1653 293 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I

a score=29748.000000
s ce10.chrX               666268 109 + 17718866 ----GTA-TGCAAAAAGAGTTT-GA---GGTGATTTGAGTGA-------AAAGTGCCAAGCGAAATTAGCCCCAAGGCCATC-------AGTGGGGGCACGCGATT----TGAATAAAGTGTGCGAATAAGAAGAA
s cb4.chrX              21143662 116 - 21540570 G--AATG----ACGAAACATTTAAA------CATTTATGTGAAAGTACGAAAGTGCCAAGTAAAATTAGCCCTGGGGCCATC-AATTGATGTGTGGACACGCAATT----TGGATGAAGTGTGTGAACAA---CAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   459167 120 -  1162296 GCAAATA-GGCGGGAAACGTTTCGA---GGTGATTTGAGTGA-------AAAGTGCCAAGTGAAATTAGCCCTGAGGCCATC-AATTGATGTGTTGGCACGCGATT----TGAATaaagtgtgtgaacaaaagcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3469036  91 - 33334924 --------gaaaagaaaagttt------ggTGAGT----GGA-------AGAGTGCCAAGCAAAATTAGGCCCGAGGCCATC----------------ACGCGATT----TGAATAAAGTGTGAGAACAACAAGAA
i caeSp111.Scaffold629  C 0 I 1009
s caePb3.Scfld02_62         1946 125 +   783054 ----GTATGCAACCAAACGTTTCTGAGCGGTGATTTTAGTGA-------AAAGTGACATTTGAAATTACCCCTGAGGCCATCTAGTTGCGGGAGTGGTACGCGattagaatgaagaaaaagagagaagaagcaCAA
i caePb3.Scfld02_62     I 293 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I

a score=-1619.000000
s ce10.chrX               666377 3 + 17718866 AGA--
s cb4.chrX              21143778 3 - 21540570 --ATG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   459287 3 -  1162296 --aaa
i caeRem4.Crem_Contig24 C 0 I 740
s caePb3.Scfld02_62         2071 3 +   783054 GGA--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I

a score=575.000000
s ce10.chrX               666380 3 + 17718866 ATA
s cb4.chrX              21143784 3 - 21540570 ACA
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_62         2074 3 +   783054 ATA
i caePb3.Scfld02_62     C 0 I 1055
e caeJap4.Scaffold54      157391 1527 +   258924 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   459290 740 -  1162296 I

a score=97.000000
s ce10.chrX               666383 6 + 17718866 GAAAAA
s cb4.chrX              21143787 6 - 21540570 ACGAAA
i cb4.chrX              C 0 I 2259
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   459290 740 -  1162296 I

a score=0.000000
s ce10.chrX               666389 1551 + 17718866  
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   459290  740 -  1162296 I

a score=3479.000000
s ce10.chrX               667940 80 + 17718866 AGTTTTAGGAGCTGAGAAGCATATGAAGAAGGTTGGGCAAAAACGAAATAAAAATGGAAAGATACTGCTGAAAATATATA
s caeRem4.Crem_Contig24   460030 79 -  1162296 aacttgaaaggctgaaaaaga-ataaggaaggttagtgaaaaacgaaaaaaagaagaaaatatattgctgaaaataaaca
i caeRem4.Crem_Contig24 I 740 I 31
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I

a score=0.000000
s ce10.chrX               668020 21 + 17718866 GATGCACACACACACACACAA
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   460109 31 -  1162296 I

a score=3775.000000
s ce10.chrX               668041 239 + 17718866 ATGTCTGGACTTGACGTGTCTTTCTGCCTCCGTTTGC--------TTCATAATTTTTCCAACAAGCACAATTAAAATTAATTGGGTTTTGGGAGTGAAGACGAAAACGGATATGGTAAACAGCCTAAATAGTCATTCGAATTAATGAACTTTGAGGTTATTA---------TCTTTAATT---------GGAAAGGGTAGGTT---TTGACTCAATAAAACTTTTTTAGGATTACCTGATGACTATTCTA---GATGGCCGCATTTGAAAT
s caeRem4.Crem_Contig24   460140 254 -  1162296 ATGACTGGACCTGACATgccttcttctcatcttctctCATATCTATTCATAATATTTCAAA---GCATAATTAAAATTAATTGGCTTTTGGGAGC-----TCGTAGTGTGTATCGCAAACA--------AGCGCTTGAAATTGATGAGCGTGggggaaaataggaaaatgctctttaaattaaagaaaaaaaagaagtaggTTATCTTGAATTTAT-GAACTTGAGTGAGAtaatttgaaagctttttaATAGGAAAATAGCATTTTAAAT
i caeRem4.Crem_Contig24 I 31 I 991
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I

a score=0.000000
s ce10.chrX               668280 1057 + 17718866  
e caePb3.Scfld02_62         2077 1055 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   460394  991 -  1162296 I

a score=502.000000
s ce10.chrX               669337 8 + 17718866 ACATCTAC
s caePb3.Scfld02_62         3132 8 +   783054 atgtctac
i caePb3.Scfld02_62     I 1055 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I
e caeRem4.Crem_Contig24   460394 991 -  1162296 I

a score=-790.000000
s ce10.chrX               669345 3 + 17718866 ACA--
s caeRem4.Crem_Contig24   461385 3 -  1162296 --act
i caeRem4.Crem_Contig24 I 991 C 0
s caePb3.Scfld02_62         3140 3 +   783054 aaa--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I
e caeSp111.Scaffold629   3469127 1009 - 33334924 I

a score=3978.000000
s ce10.chrX               669348 55 + 17718866 AGAAAAAAAAAAAA-------AAA-CTAGGGAAAAGCTTTGAG--AGGTTGCACAAAACTCAATT
s caeRem4.Crem_Contig24   461388 65 -  1162296 ggaaaaaacgaaaaccgatataaacctagttgaaaatttcgagtgaGGGTGCCCGCAACTCAATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3470136 49 - 33334924 agaaaaaaagaaga-------aaa--------aaaattgtgag-aGGTCTGCCCACAACTCAATT
i caeSp111.Scaffold629  I 1009 C 0
s caePb3.Scfld02_62         3143 36 +   783054 -----aacagagaa-------aaa--------aaaaacgtgaataGGTTT---------TCTATT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21143793 2259 - 21540570 I

a score=49092.000000
s ce10.chrX               669403 181 + 17718866 GAGCACCTGAATTCGATGATCATCCCTCCCTCTATCCACTCCCATCGGTTGCCG----------AAAAAACAATTGGTGG----------TGAGTTTCCACTCGGTTAAAC--ACGTACTTGA---GTCTTCGGACAG---GAGCACGCACATT-------CTT-----TTTTTTCTAT--------TCAACATGCAATTCAATTCCATTTACGT-TAACCTCCATTTTC
s cb4.chrX              21146052 183 - 21540570 GAGTACCTGAATTTGATGATCATC-----CTTTCTCTCGATTCCTCGTTTTCCC-----------AAAAACAATTGGTAC----------AGCATTTCCACTCGGTTAAAC--ACATACTTGA---GATCTAAGGCACCACACATACACACATT-------TTTCTTCATGTTTTCTAT--------TGGACAGACAATTCAATTCCATTTGCGT-TAACCTCcattttc
i cb4.chrX              I 2259 I 1530
s caeRem4.Crem_Contig24   461453 195 -  1162296 GAGTACCTGAATTCGTtgatcatc----tttttttcttcttttttcttctttcctatCCTAGCCGAAAAACAATTGGTAC----------TGAATTTCCACTCGGTTAAAC--ACATACTTGA---GTTCTAAGGCAC--------CACAcatt-------cttcttcgttttttttgtgtctcTTCCGAGCAGGCAATTCAATTCCATTTACGT-TAacctccattttc
i caeRem4.Crem_Contig24 C 0 I 11
s caeSp111.Scaffold629   3470185 184 - 33334924 GAGTACCTGAATTTGATGATCATT--------CCTCCCTTTGCCCC----tcca----------gaaaaacaattggtACATACAGAAGAGGAATTTCCACTCGGTTAAACATACATACTTCAGGCATTTTAAGGCAC--------caccatttttcttcgcttctttttctattctat--------tGGGTAGCCAATTCAATTCCATTTACGT-TAACCTc-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         3179 157 +   783054 GAgaatc---------tcatcatt--------tttctgctctcctctattttct----------caaaaacaattaGTAC----------TGCGTTTCCACTTGGATAAACGTACTTAAACCA-------CAAAGCAG--------CAAAAACTC------CTTCTCGTTTTGTTCTAT--------TAGGTAGGCAACTCAATCCCATTCACGTCTAAGCCT-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      157391 1527 +   258924 I

a score=1034.000000
s ce10.chrX               669584 10 + 17718866 CCATTTTCTT-
s caeRem4.Crem_Contig24   461659 11 -  1162296 CCATTTATCTT
i caeRem4.Crem_Contig24 I 11 C 0
s caeSp111.Scaffold629   3470369 10 - 33334924 ccattttgtt-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         3336 10 +   783054 TTATTCTATT-
i caePb3.Scfld02_62     C 0 I 541
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21146235 1530 - 21540570 I

a score=-7144.000000
s ce10.chrX               669594 468 + 17718866  
s caeRem4.Crem_Contig24   461670 482 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3470379 296 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I
e cb4.chrX              21146235 1530 - 21540570 I

a score=9439.000000
s ce10.chrX               670062 37 + 17718866 AAGGAACTCACTCCTTTTCTGTGAATTTTTCTGGAAT
s cb4.chrX              21147765 37 - 21540570 AATAAActcactcttcttttttcagcttaacTGGCCA
i cb4.chrX              I 1530 C 0
s caeRem4.Crem_Contig24   462152 37 -  1162296 AAAAGACTCACTCTTGCTCCTTCAGTTTTTCTGGCCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3470675 37 - 33334924 AAGCAGCTTACTCTTGCTCCTTTAATTTCTCTGGCCA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      157391 1527 +   258924 I

a score=52179.000000
s ce10.chrX               670099 309 + 17718866 TCCAGGATTGTTTTTTACTCGGAGCACTTCTATATTGGGACAATTTTTCTGAATGTTTGCAAGAAGCACTCCTAGGTTTCGAATCTGAA-----------AAAAGAAAATG-------GAAAC--------AGTTTTTCAATTATTGAACTCACCTTATTATTTCTGACTGAAAGTTCTTTAAGATTGGCGAACTTTGGCATATTGAAAGAATTTTCAGTAAGAACATTGTTGTCCAATGTGAGTTTTTCTATACGAGTACGGTTTTTGAGAACTGTGCTTGGAATACTACTGAAAA---TAGGCATTTCC---------------GATTGTGAGTGC---TGA-----TAATTATTTTGG
s cb4.chrX              21147802 306 - 21540570 ATTCGGATTATttcgtattttcaaaacttctaagTTTGGACAGTTTTTCTGGATATTGACCATAAAAACAGCAATATTGcggatctgaa-----------aatgtttgatgtCTGAAAAGAGC--------ATTCCAGCATATAC----TTTACCTTATTATTTCTTACTGCTAGTTCCTTAaggtttcgaaatttgggCATGTTGAATGAGTTTTCTGTCAACATGTTATTGTCCAGTATCAGTGTTTCTATACACTCTCTGTTTTTTATTAATTCATTGGGAATCGATCTGAAAGGCATAAACA--------------------GTTTATGCTTACATCTAA-----TGTTT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   462189 328 -  1162296 ACCCGGATTGTTTCTGACCCgcaaaacttccaaatttgGGCAATTTTTCTGCATGTTGGCTATAAATACTCCAATATTGCGAATCTGAA-----------AGATAACGATGCTTCACAAGTACTCATTTTTATTGCGCCA------------ACCTTATTATTCCGTACCGACAActctttcaaatttctgaacttGGGCATATTGAATGAGTTCTCTGTCAGCATGTTATTATCAATTATCAGTGTTTCGATGTGGTCTCGGTTCTTTATTATTGTGCTTGGTATCGACCTGAAAGTTGTCAATATTG----------AAGATTGGCTCGTGATTTCAATTTACGACTTGTTTATTTTGG
i caeRem4.Crem_Contig24 C 0 I 189
s caeSp111.Scaffold629   3470712 326 - 33334924 CCCTGGGTTATTTTGCACCTGCAGCACCTCCAAATTTGGACAATTTCTCTTTAGATTGGCTATCAAAACTCCAATATTTCGAAtct-aa-----------aatttattttgtttccaaaGGAA--------AAGCTTTAAAATTT----CTTACTTTGTTTCCTCTTATAGAAAGTTTCCTCAGGTTATTGAATCTTGGCATgttaaatgaattttcactGAGAAGGTTGTTATCCATTGTCAACGTTTCAATGttttcccgatttttgatgattgtGTTTGGTATACTTCTAGAACAT-TAATTATTGCTTACCACATGAATTTCATATGAGTTTTCA----------TGGTtgttctag
i caeSp111.Scaffold629  C 0 I 33
s caeJap4.Scaffold54      158918 260 +   258924 TCCTGGATTGTGCGCCAGATGTAAAACTTGCAAGTTTGGACAACTGCTGCGCAGATTTTTCACAAAGATTGATACGCTTCGGATCTGAATTTCTATCACCAATTTATGATTAATGACAGCAAA--------------------------CCAACTTGATTATGTTGCACTGAAAGTTCTTTGAGTCGCGGGAATTTTGGCATGTTGAACGcgttttcattcaaaaaattgtaatcaattgttagtttttcaatgttttctcgatttttgatAACTATGTTTGGAAT---------------------------------------------------------------------------
i caeJap4.Scaffold54    I 1527 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=-12535.000000
s ce10.chrX               670408 73 + 17718866 TCAGTGCTAATG-------------GCTAACTTGGTCAGTGCTT--AGATTTTAGGTAGTTAGAACAAAACAATATATATATATATAG
s cb4.chrX              21148108 31 - 21540570 CCAGAGGTAATT-------------AAGAACTTTTTTGAGTATT--------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3471071 84 - 33334924 tcagttttgatttttgaataatttgaaaaaatgtttcgaatcTTAAAAAGGTCGCGTATTGATAACGTATTAAT---TGTA-AAATAG
i caeSp111.Scaffold629  I 33 I 22
s caeJap4.Scaffold54      159178 39 +   258924 ------------------TGACCTGCAATGCTCGGATAAAAGTT-----------------CAAGAAAAACAGT--------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeRem4.Crem_Contig24   462517 189 -  1162296 I

a score=21785.000000
s ce10.chrX               670481 156 + 17718866 GTATACTTG------ATTTGTAACAATTAGACAAATTAT----------------------------------ATAAAATACACTTACGTCAAACAAAGTCCTGAAAGTACAACATGTGAGTTTATTTCATTCTTCAT---AGAAATTGGAGAATTTTGGTAAATTTGATGGGCAACACAGGCGTGTACAGGCTGAAAA
s cb4.chrX              21148139 123 - 21540570 --ATCTTTG--------------------------------------------------------------------AAGAAACTCACGTTAAGTTTAATCCAGTCAGAACAACTTTCGAGTTCACTTGAAGTTTGTT------GACTGGAGCTTCTTGATGAATTTGATGTGCAACACACGCATGTATAGGCTGAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   462706 172 -  1162296 ttatttttgatgtctGTTTGAAGTGACAAGTTTGATTG--------------------TAATTGAA-------GCAAAAATAACTTACGTCAAATGTAATCCAGTTAGTACAACTTTTGAAttcgttctctctttttcactgGAAACTGGAGCATTCTGATAGATTTGGTGAGCAACACAGGCGTGAATCGGCTGAAAT
i caeRem4.Crem_Contig24 I 189 C 0
s caeSp111.Scaffold629   3471177 193 - 33334924 acatttttg------gcctaaaatactgaaaaaaactgttcctCGCTCCCATATCAGTTAATTAGGTTCATTCTCAAGAAAAACTTACGTTAAGAAAAGACCTGACAAAACAACATGTGAGCTCATTCTGCTTTTCTCACTAGAGTCGGGAACATTCTGATTCAATTGATGAGCAACACAGGCATGAATAGGCTGAAAA
i caeSp111.Scaffold629  I 22 C 0
s caeJap4.Scaffold54      159217 121 +   258924 ------------------------------------------------------------------------------TTCTTCTCACGTTAAACGAAATCCTGAAAGAGCAATGTGTGTGACGGAAGGGTCTTTTTTACTCTCGACTGGACGGTTTGTGTATGTTTGGTGAGCAATGCAGGCATGTATTGTCTGGTAA
i caeJap4.Scaffold54    C 0 I 4081
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=-1086.000000
s ce10.chrX               670637 2 + 17718866 TA
s cb4.chrX              21148262 1 - 21540570 G-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   462878 2 -  1162296 TA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3471370 2 - 33334924 TA
i caeSp111.Scaffold629  C 0 I 18
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=-584.000000
s ce10.chrX               670639 11 + 17718866 CTAACAGTTTT
s caeRem4.Crem_Contig24   462880  4 -  1162296 GTG-------T
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148263  0 - 21540570 C
e caeSp111.Scaffold629   3471372 18 - 33334924 I

a score=-4720.000000
s ce10.chrX               670650 70 + 17718866 TTACTTGTTAACAAAGTTTA---TAA---------CACAACCATTT----TCGAAATCAAGACGGGAACGATTGAGCACAGACACA
s cb4.chrX              21148263 70 - 21540570 ----TTCAACGTAAATTCTGCCTTGAACGAATGTCCATTACCATTT----TTGGTTACAAA--------ACTTGAGCACAGGCAGG
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24   462884 79 -  1162296 TAACTTTTATGCAAAACCCATCAAAACATGTTGTTCATTACCATCC----TCAATAATAAAGT---AATATCAGCGCACAGACAGA
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold629   3471390 46 - 33334924 -----------------------TAACATGTTATTCA-TACCATTTGGGAGCAACAACAGAGA------GTTTGAG----------
i caeSp111.Scaffold629  I 18 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=-2220.000000
s ce10.chrX               670720 8 + 17718866 CACACCAC-------
s cb4.chrX              21148343 8 - 21540570 -------TGAATTCG
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold629   3471436 3 - 33334924 ------ATG------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e caeRem4.Crem_Contig24   462963 17 -  1162296 I

a score=21401.000000
s ce10.chrX               670728 143 + 17718866 GCAGCAGCTGTCAAAAAAGAGAAAGTGAGGGGAGGGA--TGAGGGTAAAA-------------ATTCCTTATCA--AGGTCAG---CCTCATGCTCAACTACATCAAAA-------ATGTTGAATGTCAGGGTTCTTTCGTACCGGTCACTCG---ATAAGTT-TTCTTATCAG
s cb4.chrX              21148351 158 - 21540570 GTCGCAGCTGTCAATAT--AGAAAGTGAGAAGAGGTGGAGCGAGGGAAAGAGGCAATAAAAGAATGTCTTATCA--AGGTCAC--CAATCCTACTTTACTACATTGGAAAG-----CTGTCGAATTTC--AGTTCTTTCGTACCGGTCACTCG---ACAAGTTGTTCTTATCAG
i cb4.chrX              C 0 I 1039
s caeRem4.Crem_Contig24   462980 164 -  1162296 GCAGCAGCTGTCAGAAA--AGAAAGTGAATGGAGGTG--GCGACgcaaaa----tattttattatcGCTTATCA--AGGTCACTGCTATTCTGCTCAACTACATCAAAACGGTTATCTTTTGAATGTCAGAGTTCTTTAGTACCGGTCACTCTCGCGAAATTTGTGcttatcaa
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold629   3471439 128 - 33334924 GCAGCAGctgtcaaaat--gaaaaagaaagtgagtgA--GTGGAGAAGTG------------------TTATCAGGAGGTCAT------GCTGCTCTACTacattaaaacaaaaatttgtcAAG------GGTTCTTTCGTACCGGTCACTTC------------TCTTATCAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=999.000000
s ce10.chrX               670871 57 + 17718866 AGAGTTGCATTAGTGGTAGTGGTGACCAAAAAGAATTTGAA--TTTA---ATTTTGAGAATA
s caeRem4.Crem_Contig24   463144 55 -  1162296 -----ctttttgagtAT-TGGTTGAccaa-gaaaatttgaaaggtTAGCAGTTTTGAGAGCA
i caeRem4.Crem_Contig24 C 0 I 426
s caeSp111.Scaffold629   3471567 51 - 33334924 -----------GAAAATAAGGGTGACCAACGCAAATTTGAAAGTTGAAACATTTTGTGAAAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I

a score=282.000000
s ce10.chrX               670928 3 + 17718866 GTT
s caeSp111.Scaffold629   3471618 3 - 33334924 Gtt
i caeSp111.Scaffold629  C 0 I 310
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeRem4.Crem_Contig24   463199 426 -  1162296 I

a score=0.000000
s ce10.chrX               670931 749 + 17718866  
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeSp111.Scaffold629   3471621 310 - 33334924 I
e caeRem4.Crem_Contig24   463199 426 -  1162296 I

a score=682.000000
s ce10.chrX               671680 67 + 17718866 ACACTT----CAAAAAACTAATTTAAAACGTGTAACACGAAATGAAAA-----AGAGGTGACCATATATGTATATA
s caeSp111.Scaffold629   3471931 59 - 33334924 ACactttttacaaaaaaacaa----aaaagcggaaaacgaaatgaaaatatccAGTGTCGACC-------------
i caeSp111.Scaffold629  I 310 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeRem4.Crem_Contig24   463199 426 -  1162296 I

a score=10309.000000
s ce10.chrX               671747 153 + 17718866 CATTCTACCAAAACCAGATTCTTATCATTTCTTCTTCCAAAGC----AAAATGGACAGATTTC---TCATAAATTTTCACTGTTCATTTTCAATGTTCTGTTGGTTTTCCAATGTTATGTTTCTCTT-GTCATC-TTCTTTTTCGAATAAATAATTTGTGAT-------
s caeRem4.Crem_Contig24   463625 139 -  1162296 CATCCCACCAAAACCAGATTCTTATC---ACTTCTTCCAACGG----AAAACGA--AGTCTTCTTGTCATaaattttcattgttc-----tcgtgttctgtttgt--------------tttcttttcttcattatttATTCCCCATTGCAAAA--TGTAATTTATGGT
i caeRem4.Crem_Contig24 I 426 I 565
s caeSp111.Scaffold629   3471990 127 - 33334924 -------CCAAAACCAGATTCTTATCA--ACTTCTTCCAACGGTCGCAAGAGAG--AGACTTC---TCataaattttcattgttc-----tcATGTTCGACATGT--------------TATCTTTG-TTTATT-TCTAATTCCCATCACAAAAGTTGTAAT-------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I

a score=364.000000
s ce10.chrX               671900 4 + 17718866 TTAT
s caeSp111.Scaffold629   3472117 4 - 33334924 TTAT
i caeSp111.Scaffold629  C 0 I 696
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeRem4.Crem_Contig24   463764 565 -  1162296 I

a score=0.000000
s ce10.chrX               671904 2870 + 17718866  
e caePb3.Scfld02_62         3346  541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeSp111.Scaffold629   3472121  696 - 33334924 I
e caeRem4.Crem_Contig24   463764  565 -  1162296 I

a score=392.000000
s ce10.chrX               674774 8 + 17718866 tattttat
s caeRem4.Crem_Contig24   464329 8 -  1162296 taatttgt
i caeRem4.Crem_Contig24 I 565 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I
e caeSp111.Scaffold629   3472121 696 - 33334924 I

a score=351.000000
s ce10.chrX               674782 12 + 17718866 tttttaataaaa-
s caeRem4.Crem_Contig24   464337 12 -  1162296 -tttcagaaatgt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3472817 12 - 33334924 tttttagaagaa-
i caeSp111.Scaffold629  I 696 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21148509 1039 - 21540570 I

a score=11901.000000
s ce10.chrX               674794 78 + 17718866 --------aattttCAGAATACCACTTTGGATTTTACCAATCTCAACGCCTGCCACAAAACTGTCCGGATCAGTAAGCA------AATTCTT
s cb4.chrX              21149548 84 - 21540570 --------AATTTCAAGAACGATAGTTTGGCTTTCTACCATCTCAATCCATGCAATCCAAGAATTGAGATCAGTAGGTGTCAttaaattatt
i cb4.chrX              I 1039 C 0
s caeRem4.Crem_Contig24   464349 78 -  1162296 --------atttttcagaacaaaagtTTATCATTTTCTCACCTGAACCCGTGTCacaaatctgtgaaaatctgtATGTG------AATTCTG
i caeRem4.Crem_Contig24 C 0 I 120
s caeSp111.Scaffold629   3472829 86 - 33334924 aatagaaaaggtTGCAGAACAAAAGTCtcgatttttctcatcttaaCCCATGCCATAAGTCTATCAAAATTAGTAAGCG------AAACTTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=-1674.000000
s ce10.chrX               674872 115 + 17718866 GTTTCAAAT---ATTTGATTTTTTTTTCCAGAAAGTTTACTCCACA---TTTTTTGGTTGCCCCATGTATATTTTCCTTTCTCGTATAATCTCGAAGAAAGTCGTAATTTATACAACATAG-------
s cb4.chrX              21149632 101 - 21540570 ----taaat---ttcTGGTAAGCTTTTTCAGGTAGCG---ATAATACCTTCTTTTGGAAACCAGATGTATTCTTCATTCA----------TTCTGAAGAGTACGAAGATGATAAAACCTAC-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3472915 114 - 33334924 -GCTgaaatttattcataaaaacatttccagGGAACT---CCAATA---GTTTTTGGAAACCTCATGTCTACTTTACCTATTC-------TTCTGAGATGCCCAACACTCTTCAAGATTATAGGCTGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e caeRem4.Crem_Contig24   464427 120 -  1162296 I

a score=3886.000000
s ce10.chrX               674987 115 + 17718866 AAATCC-------ATGAAAGTGGTAACATTACTTTGTCAAAAAGGT----------ATTTTGAATTAGATTTTTTTTTCTTCAAACGTCATAGTAATCTATTTCAGATTAAAGCAAAGTATCCCTTGTAAGG
s cb4.chrX              21149733 113 - 21540570 AGATTCTTCATAAATGAAAACGGGAGCATAACCGCATCAAAAAGGT---TTGCACGATTTGAAGTTAAGACTGT----------------TATAAATATTATTTAGAATCACAAGAATCATGCCATGTGAGG
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig24   464547 115 -  1162296 ATGTCC-------ACGAAAACGGAACAGTCTCCTTATCGAAAAGGT---ATACATG-TTTAGCATCAAGAAAATTTTCCTCAGA-----ATAAAAGTACTTTCCAGAATTATCCAAATGATTCCTTGCACT-
i caeRem4.Crem_Contig24 I 120 C 0
s caeSp111.Scaffold629   3473029 102 - 33334924 TTATTC-------AAGAAGATGGAAACATGACTCTGTCTCAAAGGTGAATTTCATAACTTTCCTTGggaattat-----------------------atttttcagaatcaagcAAATGATCCCTTGCCAAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=1372.000000
s ce10.chrX               675102 15 + 17718866 AACAATCTGATAGCC
s caeRem4.Crem_Contig24   464662 10 -  1162296 -----TTTGACAGCC
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold629   3473131 15 - 33334924 TAGAATCTGATAAGC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21149846 15 - 21540570 I

a score=9052.000000
s ce10.chrX               675117 91 + 17718866 ATCCATTCAGCAATAACACGTGTACATTGAGCTGGAAGTACACAAATCTGGATAATTATCAGAAAATCGTCATTGAACCTTCAAACTTGAT
s cb4.chrX              21149861 91 - 21540570 ATCCTTTTTCTAATGCCACTTGCACGTTTTCGTGGAAATACACTAATTTGGGAAGCTTTGACACAATTTCTGTAGAGACTGGAAAATTGAT
i cb4.chrX              I 15 I 11
s caeRem4.Crem_Contig24   464678 86 -  1162296 TCCCCTTCGGGAATACTACATGCACGATGACCTGGAGATACCGAAATCTTGAGCATGTGGATAATGTTATTTTCGACCC-----ATCTGAT
i caeRem4.Crem_Contig24 I 6 I 5
s caeSp111.Scaffold629   3473146 91 - 33334924 ATCCATTCAGTAACACATCATGTACTCTGGAATGGAAGTACCTGAATGTTGCTGATTATCAGAAAGTAATTATTGAAAGCACGAATGTGAC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=785.000000
s ce10.chrX               675208 6 + 17718866 GGATTC
s caeRem4.Crem_Contig24   464769 6 -  1162296 AGATGT
i caeRem4.Crem_Contig24 I 5 I 7
s caeSp111.Scaffold629   3473237 6 - 33334924 GGATTc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21149952 11 - 21540570 I

a score=-2625.000000
s ce10.chrX               675214 20 + 17718866 AGTTGAAAGAGAGCATAGT----------C
s cb4.chrX              21149963 14 - 21540570 -----AGACCAAAGAGAAC-----------
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig24   464782 24 -  1162296 -----ataacaaaaaaaggaagCATAAAC-
i caeRem4.Crem_Contig24 I 7 I 18
s caeSp111.Scaffold629   3473243 19 - 33334924 agttgaaacaaaatacaGT-----------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=-431.000000
s ce10.chrX               675234 17 + 17718866 GGCAGTTCA-TACTCAAA
s cb4.chrX              21149977 12 - 21540570 -----CTCATTATGCAC-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3473262 18 - 33334924 GGAAGTTTACTACTCGAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e caeRem4.Crem_Contig24   464806 18 -  1162296 I

a score=14592.000000
s ce10.chrX               675251 124 + 17718866 GACGTTACTTTTGAATCATCAGGAGATGATGAACAACGATTGCATTATACTATCACACAGACACCACAATATCTTCTATTACATTTTTTCTTCCCGGCATTGTTGTTTTTAATTCCGCCGTAAG
s cb4.chrX              21149989 124 - 21540570 GATGTCAACTACAATTCAACGTCTGATGACGAATTCCAAATTAACTATCACCTTTCACAACATCCACAACACTTATTAGTTAACTTTTTCTATCCTTCTGCATTGTTCATGGTTCCTGCGTAAG
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig24   464824 112 -  1162296 ------------GGCCTTACCTCTGATCAAGAATCCAAGCTTATCTATCACTTCTCACAAAATCCACAGGACATGATTCTCAACTTTTTGCTTCCTTCGTTTATGTTCTTGATTCCGCCGTAAG
i caeRem4.Crem_Contig24 I 18 C 0
s caeSp111.Scaffold629   3473280 124 - 33334924 ACAGTGAAATTCGAGTTGACGAAAGATGAGGATCCAAGTCTTGTATACTCATTCACGCAGAATCCACAAGACCTTCTCATTAACTTTTTCCTACCATCCTTGCTGTTTTTGATACCAccgtaag
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I

a score=-283.000000
s ce10.chrX               675375 3 + 17718866 TTT-
s caeRem4.Crem_Contig24   464936 3 -  1162296 -TTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3473404 3 - 33334924 ttt-
i caeSp111.Scaffold629  C 0 I 34
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21150113 28 - 21540570 I

a score=331.000000
s ce10.chrX               675378 13 + 17718866 GAGGCGTTATACA
s caeRem4.Crem_Contig24   464939 13 -  1162296 GACAATTTGTACA
i caeRem4.Crem_Contig24 C 0 I 180
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21150113 28 - 21540570 I
e caeSp111.Scaffold629   3473407 34 - 33334924 I

a score=0.000000
s ce10.chrX               675391 485 + 17718866 TTGCTTAGGCTTGAGCCAACTAGATATTCCATTGAAAGTGCTTTTGCACACATTAAAAAAAATATTTTTGAAAAATCTTTCCAGGAATTAGGCCATTTCATATTTGGTTCCTAGACCAAAGGCAAAATAGTTGACAGTCAATAATTTGAAATTTTCCCCACGTGATGTACACATCCAGGTTTCAAAAGATTATCAATAGAGCCTCTTTCCTTGGAAACTTTAAAGGAAAGGAGTAAAGACGTCCGTGCTTGCAAGGTTCTCATTAAAAAAAAAAGTCCTAATGTCAAACATATTCACGAATCGGAATAACAAAACGAAATTTAAAATACTATTTGCTCATTCGTTTTCAATGCTCAAACGTGTTTTCAAAATTAAACACATTAACCCCAGACTGAGCCTATACCCAAGGCTATGCCTTAGCTTAAGTTGGTATATGTTAGCGCAAAAACAATCTCTCAAAAAGTCAATGTCAATTTCAATGTATC
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21150113  28 - 21540570 I
e caeSp111.Scaffold629   3473407  34 - 33334924 I
e caeRem4.Crem_Contig24   464952 180 -  1162296 I

a score=461.000000
s ce10.chrX               675876 15 + 17718866 ACCCCTAAATGTTTA
s cb4.chrX              21150141 14 - 21540570 ACACATAAATGTTT-
i cb4.chrX              I 28 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e caeSp111.Scaffold629   3473407 34 - 33334924 I
e caeRem4.Crem_Contig24   464952 180 -  1162296 I

a score=91.000000
s ce10.chrX               675891 1 + 17718866 A
s caeRem4.Crem_Contig24   465132 1 -  1162296 A
i caeRem4.Crem_Contig24 I 180 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21150155 0 - 21540570 C
e caeSp111.Scaffold629   3473407 34 - 33334924 I

a score=546.000000
s ce10.chrX               675892 2 + 17718866 TT
s caeRem4.Crem_Contig24   465133 2 -  1162296 TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3473441 2 - 33334924 TT
i caeSp111.Scaffold629  I 34 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      159338 4081 +   258924 I
e cb4.chrX              21150155 0 - 21540570 C

a score=33585.000000
s ce10.chrX               675894 92 + 17718866 TTCAGTTGGTTATCCCTCCTACTTGGACCAATGGCAATTACCCGGTGTATCATCTTGATGACGTCACTAATTCTATTGTCCAACCACTATGA---
s cb4.chrX              21150155 90 - 21540570 --TAGATGGCTTTCGCTCCTACTTGGTCCAATGGCGATCACTCGCTGTTGCATTCTAATGACGTCACTAATCCTCCAATGTGTTCATTTCCT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   465135 92 -  1162296 TCCAGATGGCTCACCCTCCTCCTTGGTCCAATGGCAATCACCCGCTGCAGTGTTCTCATGACATCACTCTTACTGCTTGCCATTCATTTTAG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3473443 92 - 33334924 TTCAGCTGGCTTACCCTTCTTCTCGGCCCAATGGCTATCACCAGATGTTGTATTTTGATGACCTCCCTAATCCTTTTATCCATGCATTATCA---
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      163419 95 +   258924 TTAAGATGGCTCTCGCTTTTACTTGGCCCCATGGCTATTACAAGATGTTGCATACTGACGACATCACTCTTGCTTATCTCAATTAATTGCTATGA
i caeJap4.Scaffold54    I 4081 I 25
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=-968.000000
s ce10.chrX               675986 28 + 17718866 TCGAAATGTGACTGTATTTCCAATTGAT
s cb4.chrX              21150245 28 - 21540570 CGCAAATGAGCCAGGTCTTCTGGGAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   465227 28 -  1162296 TACCAATGTCCCTCAGACACTTGGAAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3473535 28 - 33334924 CTCAAGCATTCCAATTGTTCTTGGTGCT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      163514 25 +   258924 I

a score=154923.000000
s ce10.chrX               676014 590 + 17718866  
s cb4.chrX              21150273 600 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   465255 595 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3473563 557 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      163539 576 +   258924  
i caeJap4.Scaffold54    I 25 I 33
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=273.000000
s ce10.chrX               676604 1 + 17718866 A
s caeRem4.Crem_Contig24   465850 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 I 566
s caeSp111.Scaffold629   3474120 1 - 33334924 a
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164115 33 +   258924 I
e cb4.chrX              21150873 0 - 21540570 C

a score=1091.000000
s ce10.chrX               676605  9 + 17718866 ---TTTAATTGT
s cb4.chrX              21150873  9 - 21540570 ---attaattgt
i cb4.chrX              C 0 I 435
s caeSp111.Scaffold629   3474121 12 - 33334924 tgggTTAGATGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164115 33 +   258924 I
e caeRem4.Crem_Contig24   465851 566 -  1162296 I

a score=191.000000
s ce10.chrX               676614 2 + 17718866 TC
s caeSp111.Scaffold629   3474133 2 - 33334924 TC
i caeSp111.Scaffold629  C 0 I 351
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164115 33 +   258924 I
e cb4.chrX              21150882 435 - 21540570 I
e caeRem4.Crem_Contig24   465851 566 -  1162296 I

a score=0.000000
s ce10.chrX               676616 962 + 17718866  
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164115  33 +   258924 I
e cb4.chrX              21150882 435 - 21540570 I
e caeSp111.Scaffold629   3474135 351 - 33334924 I
e caeRem4.Crem_Contig24   465851 566 -  1162296 I

a score=120.000000
s ce10.chrX               677578 4 + 17718866 AAAA
s caeJap4.Scaffold54      164148 4 +   258924 AAGG
i caeJap4.Scaffold54    I 33 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e cb4.chrX              21150882 435 - 21540570 I
e caeSp111.Scaffold629   3474135 351 - 33334924 I
e caeRem4.Crem_Contig24   465851 566 -  1162296 I

a score=546.000000
s ce10.chrX               677582 1 + 17718866 A
s cb4.chrX              21151317 1 - 21540570 A
i cb4.chrX              I 435 C 0
s caeSp111.Scaffold629   3474486 1 - 33334924 A
i caeSp111.Scaffold629  I 351 C 0
s caeJap4.Scaffold54      164152 1 +   258924 A
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeRem4.Crem_Contig24   465851 566 -  1162296 I

a score=197743.000000
s ce10.chrX               677583 497 + 17718866 ACTTACGAAACACTTAACAGTGATAATCCCAGAATCACCAATATAACACCAGCCAGATTGGTCCTAATCACTTCTTGTCTTGTTTGTTTCCCAGTTTTTTGTTCTTTCAAATGTGCAATTTTACTCTGCCACTCACTCTCTTTCATTATCGTACACTTCTTGAAATTCTGAACTGTTCGAATATACGGACAGCCGATGGATGGACAATAGTATGTGTCTTCAGAAAGAGCAATTAACGAGATGTTGTAGTTTGGACCAGCGATGAGGCGATTCCACAGCCATTTCGCCGCGTAGGAGTGTCCTTTTCTATTGAGCAGCGGTTTCCCGGGTACCAAGAGGGTTTGCGGGTTGCGGGAATGGATCGCTAGAGATGGAATGGACAAAACTCCAAATGTACCGTTGTCTACATTAAATTCTGTCTGAACAAAAAATTGTGTAAAAATTTGCTATGACGCTAAAAAAATTAATCTGAAATATAACTTTAA---TTTCTGCCGAAA-
s cb4.chrX              21151318 435 - 21540570 ACTTACAAAACACTTAGCATTGACAACCCAAGAATAACAGCAATTACTCCCGCCAAATTAGTTCGAATCACTTCCTGTCTCGCTTCTTTTCCGGTTTTGTGTTCTTTAGCTATGATATTTTGCTTTCTCCACTTTTCTTCTGTAAGTATGGTGCATGACTTGAAGTTCTGGACCGTTCGGATATACGGACAACCAAGCGAAGGGCAATAATAAGTGTCTTCGGAGAGGGCAATCAGAGAAATATTGTAGTTTGGACCAGCAATCAGCCGATTCCAAAGCCATTTAGCAGCATATGAGTGTCCTTTTCGGTTCAAAAGAGGTTTTCCGGGAACGAGAAGTGATTGCGGGTTACGAGAATGAATTGCCAACGACGGAATAGAAAGTACACCAAATGTTCCGTTATCCGTATTGAATTCgttctgaa-------------------------------------------------------tttgaa---ttgtt--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   466417 442 -  1162296 ACTTACGCAACACTTATGATTGACAATCCAAGTATAGCGGAAATGACACCAACGAGATTTGTGCGAATAACTTCTTGTCTCGTTTGTTTCCCCGTCTTCTGTTCTTTCAATAAAGCATTTTGCTTTTGCCATTCGTCTTCCGTCATAATAGTGCACATCTTGAAGTTTTGCACGGTTCTGATATAAGGACATCCTAGAGAAGGACAATAATAGGTGTCCTCGGAAAGAGCAATCAACGAAATATTGTAGTTTGGGCCAGCGATTAGACGATTCCATAACCACTTTGCGGCATATGAATGACCTTTTCTATTTAATAAGGGTTTTCCAGGCACAAGAAGAGATTGTGGGTTGCGAGAGTGAATCGCTAGAGATGGGATTGAAAGTACTCCAAAAGTTCCGTTGTCCGTGTTAAACTCTGTCTGAA-----------------------------------------------------AGTTTTAG---TCCCTGACCA---
i caeRem4.Crem_Contig24 I 566 C 0
s caeSp111.Scaffold629   3474487 446 - 33334924 ACTTACAGTACACTTAGCATTGATAACCCAAGAATCGCGCATATAACTCCCACTAAATTGGTCCTGATCACTTCTTGTCTTGCTTGTTTCCCTGTTCTCTGTTCTTTGAGCTTTGTCATTTGTTTCTGCCACGTATCTTCTGTCATAATTGAGcaagatttgaaattctgaacgGTTCTAATATAAGGGCACCCTAGAGAAGGACAATAATAGGTGTCTTCAGACAGAGCAATCAAAGAGATATTATAGTTCGGGCCAGCTATTAACCGATTCCACAGCCATTTAGCTGCGTACGAGTGCCCTTTTCGATTTAATAGTGGTTTTCCGGGAACAAGAAGAGATTGTGGGTTACGAGAGTGAATGGCTAGAGATGGGATAGATAAAACTCCAAATGTCCCATTATTCACATTGAATTCTGtctgaa-----------------------------------------------------tatttcagaaatgagtgaataa--
i caeSp111.Scaffold629  C 0 I 9
s caeJap4.Scaffold54      164153 475 +   258924 TCTTACATAACACTTAATGAAGATAATCCCAAAATCGCAAGAATAACCCCCACAAGGTTACTTCTTATAATTTCCTGTCGcgcttcttttccttttttatttacaatcACGGCAACATTTTGCTTCTTCCATTCCTCTTCTGTCACAATTGTACATTGTTTAAAGTTTTGAACTGTACGGAAATACGGACACCCGATAGAAGGACAATAGTACGTGTCTGCAGAAAGAGCAATCGTGGAAATGTTGTAGTTTGGTCCGGCAATCAGTCGATTCCATAGCCATTTTGCTGCATATGAATGCCCTTTTCGGTTTAACAACGGTTTTCCAGGGACTAGGAGTGACTGAGGATTTCTAGAATGAATTGCAAGCGAAGGTATTGTTAATACTCCGAATGTGCTTTTGTCGTAGTTAAACTCGTCCTGAA-----------------------TTGGACATTTAAATAAACTTGtacacacggcaccccag---ccttcttccaaaa
i caeJap4.Scaffold54    C 0 I 172
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=0.000000
s ce10.chrX               678080 15 + 17718866 AAAATGAGTTATTAA
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e cb4.chrX              21151753  0 - 21540570 C
e caeSp111.Scaffold629   3474933  9 - 33334924 I
e caeRem4.Crem_Contig24   466859  0 -  1162296 C

a score=-3163.000000
s ce10.chrX               678095 62 + 17718866 ATTATGAAATTCAACAAATTCAGACAAGTTTTTATTTTTCCCATTGTTTTTCAGCCATATAA---
s cb4.chrX              21151753 11 - 21540570 ------------------------------------------------------tcgcATAAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   466859 22 -  1162296 -------------------TCAAAAAAG---------------------TACAGTCGTATAA---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e caeSp111.Scaffold629   3474933  9 - 33334924 I

a score=-27.000000
s ce10.chrX               678157 39 + 17718866 CGACTACCCTTTTTTGTTGGTCGAGAAAACATACACTAT
s cb4.chrX              21151764 12 - 21540570 ---------------------------GACATAAACTAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e caeSp111.Scaffold629   3474933  9 - 33334924 I
e caeRem4.Crem_Contig24   466881  0 -  1162296 C

a score=0.000000
s ce10.chrX               678196 102 + 17718866 TTTCTGAAATTGGACAGTTTTTTATTCAATACTTGTTACCTAGCAGTTCTCTTTTTTTCTAGAAGGTTCAATTTTTTAACTTAAATATTCCTTCATTTTTTC
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e cb4.chrX              21151776   0 - 21540570 C
e caeSp111.Scaffold629   3474933   9 - 33334924 I
e caeRem4.Crem_Contig24   466881   0 -  1162296 C

a score=-555.000000
s ce10.chrX               678298 42 + 17718866 ATTGAAAAACCCCCTCTCATCCTATTTTTTTACATTTTCATT
s cb4.chrX              21151776 16 - 21540570 ATTGAAAAG--------------------TGACATC------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e caeSp111.Scaffold629   3474933  9 - 33334924 I
e caeRem4.Crem_Contig24   466881  0 -  1162296 C

a score=0.000000
s ce10.chrX               678340 9 + 17718866 TTTCCAACG
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      164628 172 +   258924 I
e cb4.chrX              21151792 0 - 21540570 C
e caeSp111.Scaffold629   3474933 9 - 33334924 I
e caeRem4.Crem_Contig24   466881 0 -  1162296 C

a score=135293.000000
s ce10.chrX               678349 278 + 17718866 ACTCACTTCGAACTCAACAAAATATCTTTTCCAGACATCGAACAATTTGCGGTAATTGCTGCCAGTCATCTTCTCGAGACATTTGCAACGAGGTCGCATCAGATTAATATTCTGCCGGTAGGTCGATGCCACGTGCACCGGGCCTAATAACACAATGAGTGCGCGTGGAAGACCCCTGCGTAAGACTCCCAACGCACGGCGGATTGATGTTCGACTTGGTGGCTCGCATTTCTCGCAGAACTGGAATATGGCTTGTTATCGTTGTATAACTTTACGGA
s cb4.chrX              21151792 259 - 21540570 ACTTACTTCCAAATCTACAAAATATGTTTTCCAAACGTCAAACAAATTTCTATAATTGCTGCCAGTCATCTTCTCCAGACATTTACAACGAGGACGCATCAGATTAATGTTTTGCCGATAGGTGGATGCCACATGTACTGGTCCTAATAATACAATGAGTGCTTTTGGAAGTCCTCTTCGTAAAACACCTAGCGCTCGACGGATAGATGTGCGGCTTGGTGGCtcgcatttttcacaaaactgaaa---------tttttattggatA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   466881 272 -  1162296 ACTTACCTCCAATTCAACAAAATATCTCTTCCATACGTCAAACAACTTCCTATAATTGCTGCCAGTCATTTTCTCCAAACATTTACATCGAGGACGCATCAGATTAATATTCTGGCGGTATGTGGATGCGACATGAACTGGACCTAATAACACAATAAGTGCGCGTGGCAACCCTCTTCTTAATACACCAAGTGCCCTTCGGATTGATGTACGACTTGGTGGCTCACATTTCTCGCAAAACTGAAATATG----GTAttcgttgaaaa--tttgtgaa
i caeRem4.Crem_Contig24 C 0 I 186
s caeSp111.Scaffold629   3474942 261 - 33334924 acTAACTTCTAAATCGACGAAATAAGTTTTCCAAACATCAAACAATTTTCTATAATCTTTTCCGGTCATTTTCTCTAGACACTTGCATCGAGGTCGCATCAGATTAATGTTTTGACGGTATGTAGATGCCACGTGCACTGGGCCTAACAACACAATGAGTGCACGTGGAAGACCTCTCCGTAATACTCCCAACGCTCTCCGAATAGATGTACGGCTAGGAGGTTCACATTTCTCACAGAACTGAAATAAT----GTCTTGAGGGA-------------
i caeSp111.Scaffold629  I 9 C 0
s caeJap4.Scaffold54      164800 247 +   258924 aCATACCTCTACATCCCCAAAAGATGTCTTCCATTCATCAAACAACTTCCTGTAACTGCTTCCAGACATTTTCTCTAAACATTTACAGCGAGGTCGCATTAAATTAATATTTTGTCTATAGGTTGACGCCACGTGGACCGGTCCTAACAATACAATAAGTGCTCGTGGGAGTCCTCTTTTAAGAACACCTAATGCCTTTCTGATGGAAGATTTGCTTGGAGGCTCACACTTTTCgcaaaactgaaat-------------------------------
i caeJap4.Scaffold54    I 172 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=0.000000
s ce10.chrX               678627 6 + 17718866 ATATTT
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      165047 0 +   258924 C
e cb4.chrX              21152051 0 - 21540570 C
e caeSp111.Scaffold629   3475203 0 - 33334924 C
e caeRem4.Crem_Contig24   467153 186 -  1162296 I

a score=-5175.000000
s ce10.chrX               678633 76 + 17718866 CAGTACCGTTTTCCAGCACTAATTTAAAATACTTCTACATTATTTCTTCTTTGCCTCAACAGAATATTCCTACAGT-
s cb4.chrX              21152051  3 - 21540570 -------------------------------------------------------------------------AGT-
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      165047 19 +   258924 -------------------------------ttttgaatttatttg---------------------------aaTA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeSp111.Scaffold629   3475203  0 - 33334924 C
e caeRem4.Crem_Contig24   467153 186 -  1162296 I

a score=-3979.000000
s ce10.chrX               678709 47 + 17718866 TTCCTTTTGTCAAACTATATT----------------------------------ACACTATTGTAACCTCACATCAGTTC
s caeRem4.Crem_Contig24   467339 76 -  1162296 ttgtcattgtaaaaaaatattgtcattgtaaaaaatattattgtcattgtaaaaaatattattg-----tcattgtagtgt
i caeRem4.Crem_Contig24 I 186 C 0
s caeJap4.Scaffold54      165066 18 +   258924 --------GCTAAATAATA------------------------------------ACGTGAT-------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e cb4.chrX              21152054  0 - 21540570 C
e caeSp111.Scaffold629   3475203  0 - 33334924 C

a score=167115.000000
s ce10.chrX               678756 437 + 17718866 TAAAGTATCCCATCGGAACAGTACAGTAGCCTTCATATACCCTGAGACTTAGTAATGAAATTTTCTTACCTCTTCGGATCCTGTAACAATGGTAATCAGTGCCCATTTGTTTTTTAAAGACCTGCCAATATATCGTTGAATTCTGTGCACCAGCTCTAAAGCCTGCTGCGGTAAGTCTTCCGTTTCTGCGCCAATTTCAGCAACATTAAACTGATAATCCGGTAAAGCACGTTTCGATCCCATTCCATGAGAAATTCCTTCCAAATTTGAACCAAATTGACTCAGAATGTCTG--AATTA--CAAATGTTACTTCGCGGTGAAAAAAAACC------------ATACTGGGAATAGTTACTAGCCCATCCATATTTGCATCACCACCAATTGGAAAAGCAGCACCGCGAAACTCAACATCAGTGAACGGCCAAAGTCCACGTCCCGACTTGAA
s cb4.chrX              21152054 394 - 21540570 -------------------------TTCATCGAC---CATGCTAAT---------------------ACCTCTTCTGAGCCTGTGACAATGGTTATTAAAGCCCACTTGTTTTTGAGAGTTCTTCCGACATAACGTTGTATCCTATGAACTAGTTCTAGAGCTTGTTGAGGTAAGTCTTCTGTTTCTGCTCCAATCTCTGCTACATTAAATTGGTAATCTGGTAGAGCACTTTTCGAGCCCATTCCGTGAGATATTCCTTCCAAATTGGGCACAAACTGACTCAAGATATCTG--AATTTTATAAATATTGTTAATTGTTGGAAGCGCATTTT--------GATCACTTGGCAGTGTGACCAACCCGTCCATATTTGCATCACCGCCAATTGGAAATGCAGCACCACGAAATTCAACATCGGTGAATGGCCACAAACCACGTCCTGACTGCAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   467415 435 -  1162296 caaaaattgtcagtgtaaaaataattttgtcgtT--GTATTCtaatg-aaatgagataaaaTCTCTCACCTCTTCGGAACCAGTCACAATTGTAATGAGTGCccatttgttttttaaagacCTTCCGACATAACGTTGCATTCTGTGTACTAACTCCAAAGCTTGTTGCGGGAGATCTTCGGTTTCTGCTCCAATCTCAGCAACATTGAACTGATAATCTGGTAAAGCTGTTTTTGAACCCATTCCATGTGAGATTCCCTCCAAATTTGGTACAAACTGACTAAGAATGTCTG--AAATC-----ACGTTTTCACTAACAAGAAGACGTTCTC--------AAGTACTTGGTAGCGTTACTAATCCGTCCATATTAGCATCTCCACCAATCGGGAAAGCTGCACCACGAAACTCGACATCAGTGAATGGCCATAAACCACGACCAGACTGAAA
i caeRem4.Crem_Contig24 C 0 I 38
s caeSp111.Scaffold629   3475203 388 - 33334924 ------------------------------------------------TAGagaatcaaagttttctACCTCTTCGGATCCTGTTACAATAGTGATAAGTGCCCATTTGTTTTTAAGTGATCTTCCAACGTATCTCTGCATTCTATGAACTAGTTCTAAAGCCTGCTCCGGCAAGTCCTCTGTCTCTGCTCCAATCTCAGCCACATTGAATTGATAATCAGGGAGAGCTGTTTTCGACCCCATCCCATGAGAGATACCCTCCAGATTTGGAACAAATTGACTCAAAATATCTGT-GAATCTgaattagttttta--------aaatagatGGT--------TGATACTTGGAAGAGTGACAAGTCCATCCATGTTTGCGTCACCACCAATTGGAAAAGCTGCTCCACGAAACTCCACATCAGTAAACGGCCAGAGTCCTCTTCCagactgaaa
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold54      165084 389 +   258924 --------------------------------------------------------CATCGTAACTTGCCTCTTCAGATCCTGTTACAATAGTTATCAAAGCCCATTTTCTGTTGAGAGTTTTCCCAACATAATGTTGAATTCTGCGAACTAACTCGATTGCTTGTTGAGGTAAATCCTCGGTTTCCGCTCCGATTTCGGCTACATTAAACTGATAATCTGGCAGCGCATTCTTTGAGCCCATTCCATGCGAAACGCCTTCTAAGTCGGGCACAAACTGACTCAAAATGTCTGCAGATTAGTAATATAATATTC--------AAGAGCCTTTTACTATTGAACGCACTTGGAATTGTCACCAATCCATCCATATTTGCATCTCCGCCTATTGGAAATGCTGCTCCTCGAAACTCCACGTCGGTGAATGGCCACAAACCACGACCCGACTGAGA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=-18148.000000
s ce10.chrX               679193  39 + 17718866 AAAA-----TATT-----------------TGAAA-------------------------------------------------------------------------------------------------------------------ATATTGAAAAAAAAAAC-CAAAAAAAT
s cb4.chrX              21152449  36 - 21540570 AGGGTATGTTATA-----------------TGGGAGGG---------------------------------------------------------------------------------------------------------------TATACTAAAGGGAAA-------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   3475592  30 - 33334924 aaaaatgtttcta-----------------taGAA-------------------------------------------------------------------------------------------------------------------ATACTGTGATGC---------------
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold54      165473 177 +   258924 AAATTGTGTTATTAACGCGTCGCGAAAAGCTGGAAGAGCGGAGCGTgcgactcggctgtggtctcgccgcaaAACGtgtggcggcgagagagtgcggataATTGAGAGAGCGCAATTccctgtgcgattggagcgaatttgcagcgttttgtACCGAATATAAATACACTAACTAAC
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeRem4.Crem_Contig24   467850  38 -  1162296 I

a score=49863.000000
s ce10.chrX               679232 78 + 17718866 TTACCGCTAACGAGTCTCCCATTGCGCCTACAATTTGAATATCTTCCGGAGATAATTGAGCAACTGACTCACCCTAAA
s cb4.chrX              21152485 78 - 21540570 TTACAGCTAATGAGTCTCCCATTGCACCAACAATTCGAATGTCTTCTGGAGACAACTGAGCGACAGATTCTCCCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   467888 78 -  1162296 TTACAGCTAATGAGTCTCCCATTGCGCCCACAATTTGAATATCCTCTGGTGAGAGCTGAGCAACAGATTCGCCCTAAA
i caeRem4.Crem_Contig24 I 38 I 39
s caeSp111.Scaffold629   3475622 78 - 33334924 TTACCGCCAGTGAATCACCCATCGCTCCAACAATTTGTATATCCTCCGGAGAAAGTTGAGCCACAGATTCTCcctaaa
i caeSp111.Scaffold629  C 0 I 6
s caeJap4.Scaffold54      165650 78 +   258924 TTACAGCTAAAGAATCCCCCATTGCACCGACAATTCTTATATCTTCAGGTGAAATTTGAGCAACAGATTCAccctgaa
i caeJap4.Scaffold54    C 0 I 54
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=611.000000
s ce10.chrX               679310 10 + 17718866 TAAGGTATAT
s cb4.chrX              21152563 10 - 21540570 TTGGATCTAT
i cb4.chrX              C 0 I 22
s caeSp111.Scaffold629   3475706 10 - 33334924 ttatgtCTCT
i caeSp111.Scaffold629  I 6 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      165728 54 +   258924 I
e caeRem4.Crem_Contig24   467966 39 -  1162296 I

a score=624.000000
s ce10.chrX               679320 8 + 17718866 CAAAATTG
s caeSp111.Scaffold629   3475716 8 - 33334924 CAAAACTG
i caeSp111.Scaffold629  C 0 I 9
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      165728 54 +   258924 I
e cb4.chrX              21152573 22 - 21540570 I
e caeRem4.Crem_Contig24   467966 39 -  1162296 I

a score=0.000000
s ce10.chrX               679328 734 + 17718866  
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      165728  54 +   258924 I
e cb4.chrX              21152573  22 - 21540570 I
e caeSp111.Scaffold629   3475724   9 - 33334924 I
e caeRem4.Crem_Contig24   467966  39 -  1162296 I

a score=182.000000
s ce10.chrX               680062 2 + 17718866 AT
s caeJap4.Scaffold54      165782 2 +   258924 AT
i caeJap4.Scaffold54    I 54 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e cb4.chrX              21152573 22 - 21540570 I
e caeSp111.Scaffold629   3475724 9 - 33334924 I
e caeRem4.Crem_Contig24   467966 39 -  1162296 I

a score=156.000000
s ce10.chrX               680064 3 + 17718866 ATA
s cb4.chrX              21152595 3 - 21540570 ACA
i cb4.chrX              I 22 C 0
s caeJap4.Scaffold54      165784 3 +   258924 ACT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeSp111.Scaffold629   3475724 9 - 33334924 I
e caeRem4.Crem_Contig24   467966 39 -  1162296 I

a score=94119.000000
s ce10.chrX               680067 268 + 17718866 TACCGTATGCAACATTGGCTTTGCATGTGGACACGAAAAACTTTTCTTGTTCGAGAACCCTCCAGAAATTTCA-CTTTTGACTGCTTTTCGATCGTCTAGTTGGTCGACAATTCTGAAAATTGTGTTTTCTTTTGGAAAC-------ATCTTTTTTAACGCTTCTTAA-----ACACTTACACATCATCATCATCTGGAGCTCTTGTTGAAACAGGTGTTGTAGCTTCTGCTATTGGCTTTGCAGTTAACCAGTCATAATCGTACTGGTCGTAATCAGTGG
s cb4.chrX              21152598 260 - 21540570 AACCGTATGTAACATAGGTTTGGCGTGAGGACaagagaaacttttttcatttgagAATCCTCCAGAAATTTCACCTATTTACTGCTTTTCGGTTGTCTAATTGATCGACGATACTCAaa--------------ggaaaaat------attatttttggtATTTCTCGGTT-CTAAACCTACACATCATCATCGTCCGGAGATTTTGTAGAAGACGGCGTTGACGCTTCTGGCCGAGGTTTAGCTGTCAGCCAATCATAATCATATTGATCATAGTCAGTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   468005 265 -  1162296 TACCGTATGCAACATAGGTTTGGCATGTGGGCATCTAAAACTTTTCTCATTAGAGAATCCACCTGAAATCTCA-CTGTTGACAGCTTTACGATTGTCTAACTGATCGacaatgctgaaa------ttttaatctGAGCAATTTAGAGAATGAGTTTAGTATTTC---------AAACTTACACATCATCGTCATCTGGTGCACTGGTAGATGTAGTTACTGCCACATTTGGTAAAGGTTTGGCAGTCAGCCATTCATAATCATACTGGTCGTAGTCCGTGG
i caeRem4.Crem_Contig24 I 39 C 0
s caeSp111.Scaffold629   3475733 250 - 33334924 TACCGTATGCAAAATTGGTTTGGCGTGAGgacaagaaaaacttttcttgtttAGAAAGCCTCCTGAAATCTCG-TTTTTCACCGCTTTTCGATCATCCAACTGATCCACAATACTGTAA-----------ACCGGATCACTTTG---AATAGCTTTA-CAT------------GAACTTACACATCGTCATCATCAGGAGCTCTGGTTGATGTAGTCACAG---CGGATGGTAAGGGTTTAGCGGTGAGCCAGTCATAGTCATATTGGTCGTAGTCGGTGG
i caeSp111.Scaffold629  I 9 C 0
s caeJap4.Scaffold54      165787 249 +   258924 CACCGTATGCAATATTGGTTTAGCATGGGGGCATAAGAAACTTTTCCTGTTAAAGAATCCTCCAGAAATTTCA-TTGTTCACTGCCTTACGGTTGTCAAGTTGGTCAACAATACTGTgg----------------------------aattcattaaaaaattgtttgttaaTTTACATACATGTCGTCATCGTCAGGTGCTTTTGTAG---TGAATTCCAACTCGTGTTCGATTGGTTTAGAAGTCAACCAGTCATAGTCTTGCTGGTCGTAATCTGTAG
i caeJap4.Scaffold54    C 0 I 666
e caePb3.Scfld02_62         3346 541 +   783054 I

a score=600.000000
s ce10.chrX               680335 1 + 17718866 C
s cb4.chrX              21152858 1 - 21540570 C
i cb4.chrX              C 0 I 311
s caeRem4.Crem_Contig24   468270 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3475983 1 - 33334924 C
i caeSp111.Scaffold629  C 0 I 365
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      166036 666 +   258924 I

a score=339.000000
s ce10.chrX               680336 266 + 17718866 CACATAAATTTG-------CAGTCCACAA------------------------------------AGTAAAATTAATAATGTTGAAATAAACTTAG----TTTTCATATTTTCTGTTTATTCTCAGCATGAGAAATCGAATGAATACTCGACACTTACTCATGTTTTCGATTAGCATAA---------TCATTTATTTTCCGTGAGCGGAGTGATACTGTTG------AATGTGATACATACAATCGTTTGCCGGCAAAGTAGACAGGAATGTGGAAAAGTTGAAAAAAAACAAGAGAAACTGGGAAGAGTGAAGAAAATGGCGAGGA
s caeRem4.Crem_Contig24   468271 284 -  1162296 TTGATGTCTCTGTTAGATccaatttataatttttttaaatcaagtTATCAGCTATCACCTTGATTAGTACAACTAGTATTACC--AGTaaacacaaaaactttttcaacattttgttgAAACT---------AACTTCAATAAAACGTCGACAGTACTCCA----CTAGCTTAgcataaaattaaaatttattcgTCATTTCCACGCAAAGTGATACATTTGCATGGACATGTGATACATACAGTCA--------------AGATAGGGGTG---------------AAAAGAAGTAAATGTGTGCCGGGCGAAGagaatgaagagga
i caeRem4.Crem_Contig24 C 0 I 75
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      166036 666 +   258924 I
e cb4.chrX              21152859 311 - 21540570 I
e caeSp111.Scaffold629   3475984 365 - 33334924 I

a score=0.000000
s ce10.chrX               680602 530 + 17718866  
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      166036 666 +   258924 I
e cb4.chrX              21152859 311 - 21540570 I
e caeSp111.Scaffold629   3475984 365 - 33334924 I
e caeRem4.Crem_Contig24   468555  75 -  1162296 I

a score=211.000000
s ce10.chrX               681132 5 + 17718866 AAAAC
s caeSp111.Scaffold629   3476349 5 - 33334924 AAGAT
i caeSp111.Scaffold629  I 365 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      166036 666 +   258924 I
e cb4.chrX              21152859 311 - 21540570 I
e caeRem4.Crem_Contig24   468555 75 -  1162296 I

a score=273.000000
s ce10.chrX               681137 1 + 17718866 A
s cb4.chrX              21153170 1 - 21540570 A
i cb4.chrX              I 311 C 0
s caeSp111.Scaffold629   3476354 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeJap4.Scaffold54      166036 666 +   258924 I
e caeRem4.Crem_Contig24   468555 75 -  1162296 I

a score=-971.000000
s ce10.chrX               681138 2 + 17718866 TT-
s cb4.chrX              21153171 2 - 21540570 TT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3476355 2 - 33334924 gt-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      166702 2 +   258924 -TC
i caeJap4.Scaffold54    I 666 C 0
e caePb3.Scfld02_62         3346 541 +   783054 I
e caeRem4.Crem_Contig24   468555 75 -  1162296 I

a score=38.000000
s ce10.chrX               681140 3 + 17718866 -TTA
s cb4.chrX              21153173 3 - 21540570 -TTA
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold629   3476357 3 - 33334924 -tca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         3887 3 +   783054 -tta
i caePb3.Scfld02_62     I 541 C 0
s caeJap4.Scaffold54      166704 3 +   258924 TTT-
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   468555 75 -  1162296 I

a score=80807.000000
s ce10.chrX               681143 295 + 17718866 TTCCGTTT-TTTTGGCG---TCAAAGTTATCGACCAAGTCTTCGACTACCCCGACAATCGACTTTTTTTCCTGAACTGGCGAAGCAAACAAGAACGAAGAGTCTTCAATGACACGGATCAACTGGCGATGGAGGCCTCCTAAA--TTATTGATTGATTTTAACGTTTT--------------------------------------------TTCAGT----------------ATA-------ACTTTTTAAATAT--------------------------------------------------------CCTTACCTTGCCCATCAACAAATGCGTGATAGAAGATGTTGCCCAGAATGAGCAACAGACGAAGAGTGCCTGACCACCATGCCACTAATCCATGAGAGGCCGTTGATACT---G
s cb4.chrX              21153180 419 - 21540570 ----ttct-ttttgactttttcaaaatcttcgagCAAGTCTTCAACGACACCGATTGTGGTTTTCTTTTCAAGGATCGGCGATAAGCAGAAGTATGAGGAGTCTTCAATGACTCGGATCAATTGGCGATGAAGTCCTCCTAAAAGTTAATAGGTAATTCGAACGTTTTGAGTAGatccaatttcaaaatgacttTCTACAAACTATAAAATATTTATCCCACAGGAATGAaggaaaatgaatgaaaagcTTAGACAACAACATAAGAAAaccttagaaaaaaaaccttagAAAACATGCCGACTATTTACTTCACTTACCTTGGCCGTCAACAAAAGCGTGATAAAATAAATTTCCAAGAATGAGACTCAGACGAATTGTCGCGGACCACCAAGTGACTGTACCGTTGGAAGCAGTAGATACT---G
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   468630 300 -  1162296 ----ttctgttttcgcGTTTTGGAAATCTTCGAGAAGGTCTTCAACAACTCCGattgtagtttttttctcaagaattggagaagaagacagaAATGAAGAGTCTTCAATGACGCGAATGAGTTGACGGTGTAATCCTCCTATAA------AAGTGTTCC---------------------------AATAATCAtagataatc-----aatttttctc----------------aagtgA--------CCTAAATAA----------------------------------------------------------TTACCTTGTCCATCCACAAACGCATGGTAGAAGATGTTTCCAAGGATTAGTCCGAGACGAAGAGTTGCAGACCACCAAGTGACTGTTCCATGAGAAGCAGTTGACACT---A
i caeRem4.Crem_Contig24 I 75 C 0
s caeSp111.Scaffold629   3476360 291 - 33334924 ctcatttt-tcttaacAGTTTCGAAATCTTCAACAAGATCTTCAACGACTCCAATAgctgttttcttctcgagaaTTGGAGTTGACGACAAAAATGAGGTTTCCTCGATGACACGGATTAGTTGACGATGAAGACCTCCTAGA-------AAGTGTG-------------------------------------------------------TTTAAT----------------ATAAGAAAACAGCATCTGAAGGA---------------------------------------------------------CATACCTTGTCCATCAACAAAAGTGTGATAGACAATATTgccaaaaatgagaattgcGCGGAGACCTGCGGACCACCAAACAACTGTTCCGTGAGAGGCAGTGGTTACTTTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         3890 319 +   783054 atttgttt-ttttgactgtttcgtATTCGTTGATGAGATCCTCAACAAGGCCAGTTAGTGGTTTCTTTGCCATAGTAGGAGACGAGGATAACAATGAAGACTCTTCGATAACACGGATTAGTTGCCGATGAAGCCCGCCTGGA-------AATTGTGATGATTGGTTTGACTTCGTTAGATTG------GAGCTTCgat-------------tttaca----------------acaaaaaaaaa-----taaagtt---------------------------------------------------------ctcaCCTTGTCCATCAACAGCTGCATGgtagaaaatgtttccaaaaatcagcACAACGCGAGTTGTTCCAGACCACCAGGTCATTGATTCATGAGATGCAGCAGTCACT---G
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      166707 273 +   258924 TTACAACT-TTTTAATG-TTTCTCGATCATCCAATAGTTTTTCCACGACAGCCTCACTAGTTTTTTCTTCTACAGTGGGGGTGTAAGAAAGGAATGAATAATCCTCAAACACGCGTACCAATTGTCGATATAGACCGCCTGag-------gaattttttaagcgtt----------------------------------------------ATTAAC----------------AT--------------TGTTGTA---------------------------------------------------------CATACCTTGACCATCCACAAATGCGTGGTAAAATATATTGCCAGCAGCGAGGCCCAAACGAAGAGTGGCGGACCACCATTTTATTGTGC---------CCGTTGAAATT---G
i caeJap4.Scaffold54    C 0 I 55

a score=-1621.000000
s ce10.chrX               681438 4 + 17718866 AAAA
s cb4.chrX              21153599 4 - 21540570 AAAC
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24   468930 4 -  1162296 AAAA
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold629   3476651 1 - 33334924 A---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         4209 1 +   783054 A---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      166980 55 +   258924 I

a score=1543.000000
s ce10.chrX               681442 10 + 17718866 CGTTTGTTTT
s cb4.chrX              21153614 10 - 21540570 cgtttttttt
i cb4.chrX              I 11 C 0
s caeSp111.Scaffold629   3476652 10 - 33334924 AACctagttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         4210 10 +   783054 AATTTCGTTT
i caePb3.Scfld02_62     C 0 I 35
e caeJap4.Scaffold54      166980 55 +   258924 I
e caeRem4.Crem_Contig24   468934 25 -  1162296 I

a score=-829.000000
s ce10.chrX               681452 1 + 17718866 T-
s cb4.chrX              21153624 1 - 21540570 -a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3476662 1 - 33334924 t-
i caeSp111.Scaffold629  C 0 I 21
e caePb3.Scfld02_62         4220 35 +   783054 I
e caeJap4.Scaffold54      166980 55 +   258924 I
e caeRem4.Crem_Contig24   468934 25 -  1162296 I

a score=168.000000
s ce10.chrX               681453 4 + 17718866 GGAT
s cb4.chrX              21153625 4 - 21540570 gTAT
i cb4.chrX              C 0 I 4
e caePb3.Scfld02_62         4220 35 +   783054 I
e caeJap4.Scaffold54      166980 55 +   258924 I
e caeSp111.Scaffold629   3476663 21 - 33334924 I
e caeRem4.Crem_Contig24   468934 25 -  1162296 I

a score=0.000000
s ce10.chrX               681457 495 + 17718866 GAAATTAAAACCTTTCAGATACTCAAACCTTTTCAGAACTCAATCTATATCAAACTCGGCACAAAATTTCTATTATCGACACTCGAAATAAATAAACAGTGGGGCGTATACGCACAAATCCTAAAATAATTTTTTTAACCAgccgccaacatctcacgggttccgcgtgccactttgtgttgtggacagagggttacgccctcactatcagcgttcaacctcactctgagggcgtggcgcggaaaacgtaagatctcggcgactgatatcagttgggattccgatttttgacattctcctgtgagtttctggaaataaaagacgggacctaaattttagaatttgtgcgtacacaccaagcagtttattattttaattgtaCATTGAGGATTTTTGTTCAGTCATGTGAGTTTAAAAATGATAAAACTTTACTTGAAATTCTCAGAAGGAAGCTCAATATTGCTTAAATAGAGCCGAGTGAACCTCTGAACTCAC
e caePb3.Scfld02_62         4220  35 +   783054 I
e caeJap4.Scaffold54      166980  55 +   258924 I
e cb4.chrX              21153629   4 - 21540570 I
e caeSp111.Scaffold629   3476663  21 - 33334924 I
e caeRem4.Crem_Contig24   468934  25 -  1162296 I

a score=350.000000
s ce10.chrX               681952 6 + 17718866 ATGACA
s caeRem4.Crem_Contig24   468959 6 -  1162296 ATGACT
i caeRem4.Crem_Contig24 I 25 C 0
e caePb3.Scfld02_62         4220 35 +   783054 I
e caeJap4.Scaffold54      166980 55 +   258924 I
e cb4.chrX              21153629 4 - 21540570 I
e caeSp111.Scaffold629   3476663 21 - 33334924 I

a score=26946.000000
s ce10.chrX               681958 136 + 17718866 TACCTATAAGTACAATTATATGAAAAACCGCAGTGACGAGCAAAAGAAGTGCAATATCAGCGCGCGTTTCTCGTTGTTGCAATATAAACCTG-----AA--------ATTTTAAAATAATC-----------------------------------------------------------------------------------GGATCCAGTTTTTTCTTGTG----------------------------TTTTTTAA
s cb4.chrX              21153633 125 - 21540570 TACCAATGAGAACAACTATATGGAAAACTGCAGTGACCAACAAAAGCAGTGCGATGTCCGCTCGATTTTCCCGTTGTTGCAAGATGAATCTGCcagaaa-------------tga-----------------------------------------------------------------------------------------aaattcgaCTCAATT---------------------------------TCAATTAA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   468965 120 -  1162296 AACCGATCAGAACAATAATATGGAAAACAGCGgtgacaagaagaagaagagcaataTCAGCTCGAGTCTCACGTTGTTGGAGGATGAATCTG-----AA-------------CAA-----------------------------------------------------------------------------------------AATTAGCAAGGTATA---------------------------------TCAATTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3476684 131 - 33334924 TACCTATCAAGacgatgaaatggaaaactgCAGTGACCAACAAAAGCAAGGCAATGTCGGCGCGAGTCTCCCGCTGTTGAAGGATGAACCTG-----GA-------------CATTTGAAC-----------------------------------------------------------------------------------AGATaatatttcataatttg----------------------GGGTTGTA------
i caeSp111.Scaffold629  I 21 C 0
s caePb3.Scfld02_62         4255 255 +   783054 TaccaataaaaataatgatgtGAAAAACTGCATTCACCAAAAGGAGCAGTGCAATATCCGCACGTGTTTCACGCTGTTGCAAGATGAACCTG-----AAAGCAGATGATGTTCAAttggacttttttttactgtcgTGACTATGCAGCTATAGCTGTTAAAAATACCAACAAAATTTCTCATGGGAATAAATATGGAAAACCTGAGACAAAAACTAATAAtatgacactttttgaattcttgttGAGGGTAGTCATTTAA
i caePb3.Scfld02_62     I 35 C 0
s caeJap4.Scaffold54      167035 125 +   258924 TACCTATCAGGATAGTTACGTGATAAACCGCAGTTACAAGAAGTAGAAGAGCAATATCTGACCGGGCTTCTCGTTGTTGAAGAATGAATctt-----ta--------aatattattttaacAGT--------------------------------------------------------------------------------ATATTTTAGTGTAA------------------------------------------
i caeJap4.Scaffold54    I 55 I 500

a score=51552.000000
s ce10.chrX               682094 181 + 17718866 AC--------TTACTTGAAGAGAATTCCGAATGAAACTAGAGTGACGCCATAGTAGCGAACAATGACTAGGGCTTCCGGCGGAATTTGTTCAATTCCGTGATCCAGGTATATGCCAAGACGGGGTAGGACTAGGCACTGAAATATTAAAAAACTTTTAAAACAAAGTCAATCCACTTTTTCAAAGCATG
s cb4.chrX              21153758 168 - 21540570 GG-----ATATTACTTGAACAACAATCCAAAGGACAGCAGCGTGACACCATAGTAACGAACAATCACGTATGCTTCGATTGGAATTGATTCGATTCCATGGTCTAGGTATAGACCAAAACGCGGCAGGAACAGACACTGAAGAATGACATGAAGTT----------------CATTAATTCAAAATATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   469085 148 -  1162296 AATGCACTGATTACTTGAACAGTAGTCCAAATGAGACTAATGTGACACCATAGTAACGAATAATGACGACAGCTTCGGTTGGAATTGTGTCGATGCCATGATCAAGATATATCCCGAGACGTGGGAGGAAGAGACACTa-----------------------------------------caaaaactg
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3476815 163 - 33334924 -----------TACTTGAAAAGTAGTCCAAATGCGACCAAGGTGATACCATAGTATCTGATTACTACTGCAGCTTCTTGTGGGATTGAAGCAATTCCATGGTCAAGATATAGTCCGAGTTGTGGGAAGAAGATGCActggaaaattttatatatttGGA-------------CGATGAGTAAAAACA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         4510 167 +   783054 GCAAAACAAATCACTTGAACAAAATCCCAAACGAAACCAAGGCGACTCCGTAATATCGCACAACAACAAGAAGGTCGCTTGGAATAGTCTCTATGCCATGATCGTAATAGACTCCAAGTTTCGGGAAGAACAggtactgaaaa-------acatttgaa-------------cagtttttcaaaaca--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      167660 151 +   258924 --------ATTTACCTGAATAAAactccgaaaaatattaatgTAACACCATAATACCGAGCAATTAGAATCTCTTCATTTGGAAGAATGTCAATTCCATGATCGATTAGAATGCCGAAACGTGGAAGAAAAAGGCACTGGAAAA----------------------------AGTTGTTTGTAGATG--
i caeJap4.Scaffold54    I 500 C 0

a score=-11995.000000
s ce10.chrX               682275 109 + 17718866 TCCGCGCAACATTTTTTTGTTACACGTGTGCCAAGTTTGGGACCAAACGGGGGGGGGGGGGGGGGGTGGGTAGACCAAAAAAGTCAACCCAAGTAGATAGAATAATGTC
s caeRem4.Crem_Contig24   469234  25 -  1162296 ----------gtttt-------------------------------------------------agtggtttgctaaaaaaaac-------------------------
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62         4677  15 +   783054 -----------------------------------------------------------------gtg----------aaaatccaATTC-------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      167811  28 +   258924 --------------------------------------------------------------TGCATGTTTTGTTAAGTTAAGTTAATTT-------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21153926   0 - 21540570 C
e caeSp111.Scaffold629   3476978   0 - 33334924 C

a score=88120.000000
s ce10.chrX               682384 121 + 17718866 AACTCACAATTGTACCAATCAGGAGAAAATACAGCGAGTTCAAGGTGTTCCATACAAACATTCCTCGTGGCAGACGAACATACAGTGACTCGTTTATACCCAGTAGTTGGGAAATCTGAAA
s cb4.chrX              21153926 119 - 21540570 AACTCACTATTGCGCCGATTAGAAGGAAGTAGACAGAGTTCAGAGTGTTCCATACGAACATTCCTCGTGGCAAACGGACGTAGAGTGATTCATTGATTCCGAGAAGTTGAGATATCTGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   469259 121 -  1162296 aactcacaaTTGTGCCAGCCAacaagaaatagagagaattCAATGTGTTCCAGACAAACATCCCGCGTGGTAGGCGGACATACAAGGATTCGTTGATACCAAGTAGTTGAGAGATCTAAAT
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3476978 120 - 33334924 -ACTAACCATGGAACCGATGAGAAGAAAGTAAAGCGAGTTGACGGTATTCCAGACAAacattccacgtggcaatcGAACGTATAAGGATTCATTGATACCAAGAAGTTGtgatatctgaaa
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_62         4692 120 +   783054 -ACAAACCATTGCaccaagaagaaagaagtagAAAGAGTTCACTGTGTTCCAGACGAAAAATCCTCGCGGCATTCTGAGATACAGTGATTCATTGATTCCAAGAAGTTgggaaatctggaa
i caePb3.Scfld02_62     C 0 I 347
s caeJap4.Scaffold54      167839 121 +   258924 AACTCACTAGACCCCCGAATACTAAAAAGTAAAGCGAGTTAATATTGTTCCAGACAAACATTCCACGCGGAAGGCGCACATATAGAGATTCATTAATACCAAGGAGTTGGGAGATCTGGAA
i caeJap4.Scaffold54    C 0 C 0

a score=-11033.000000
s ce10.chrX               682505 40 + 17718866 ---------------TTAGATACTTTTTGAGATTCCGAAACCAAATCAGTTAAGA
s cb4.chrX              21154045 27 - 21540570 --------------------------TTTGAATAGttaaactcgaaaaattga--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   469381 36 -  1162296 ---------------TGAAAACTTCTATGAAATAactaaataaaacaaatt----
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3477101 27 - 33334924 ---------------taaaa------attggatttctCAACATTCAAT-------
i caeSp111.Scaffold629  I 3 C 0
s caeJap4.Scaffold54      167960 45 +   258924 GTATAATTATTATCTTTATAAATATTATT-ACTTTTTAAACCCCAT---------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         4812 347 +   783054 I

a score=184062.000000
s ce10.chrX               682545 234 + 17718866 AAAACAACTTACTTTTGATTTGTAGACTTCTCCATTGTCACCAGCCAATTCTCCGACACCAAGCAGCTTCCTTGTCTTGAGACGACTTTGTAGATCGCTTGCAGACTGCTTTCTACTGACAATAGTATCATCAGTCGGTGTTCCAACTTT------CAATTTTTCATCTCTCATATTTTCAAGCAACTGCTCGTCCAAAACGTCGTAGAACTTCTCAGCTACCAAACTAATCTCATTCAT
s cb4.chrX              21154072 231 - 21540570 aaaataactcacTTTTGATTTGTAAACATCGCCATTGTCTCCTGCCAACTCTCCCACACCGAGCAGCTTTCTCGTTTTGAGACGACTTTGTAGATCGCTCGCCGACTGTTTTCTACTAACAATGGTATCTTCAGTTGGGGCACCCATTTTAGCAAGAAATTTCTC---------ACTGTCTAAGAGCTGCTCGTCGAGCACGTCGTAGAATTTCTCAGCTACCAAATTAATCTCATTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   469417 236 -  1162296 ----caaCTCACTTTTGACTTATAGACGTCACCATTATCGCCAGCCAACTCTCCGACACCAAGCAGCTTTCTGGTTTTGAGACGCGATTGCAGGTCACTGGCCGATTGTTTTCTACTAACAATGGTATCATCAGTAGGTGCTCCAATTTTACCAAGCAACTTTTCGTCTCTCATACTTTCTAACAACTGATCGTCCAACACGTCGTAGAATTTCTCAGCTACCAAACTAATCTCATTCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3477128 234 - 33334924 ------ACTTACCTTAGACTTATAGACATCTCCATTATCACCTGCCAATTCCCCGACACCAAGCAACTTCCGGGTTTTGAGCCGACTTTGCAAATCGCTGGCGGACTGTTTTCTACTAACAATGGTATCATCAGTGGGGGCTCCAATTTTtgccaaaaatttttcatctttcataCTCTCAAGAAGCTGATCGTCCAACACGTCGTAAAACTTCTCAGCTACCATACTaatctcattcat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62         5159 237 +   783054 aaaaaaaCCCACCTTGGATTTGTACACATCTCCATTGTCACCTGCCAATTCTCCAACACCAAgcagttttcttgttttaagTCGGCTTTGCAAGTCGCTTGCTGACTGTTTTCTACTAACAACAGTATCGTCAGTTGGTGTACTCATTTTTGC---GAACTTCTCgtctctcaaattttcgagtatttGGTTGTCTACTACGTCGTAGAATTCGTTTGCGACAGAACTAATCTTGTCCAT
i caePb3.Scfld02_62     I 347 I 15092
s caeJap4.Scaffold54      168005 228 +   258924 ------ACATACCTTTGACTTGTAAATTTCTCCATTATCCCCAGCAAGCTCGCCAACTCCAAGAAGTTTTCTCGTTTTCAACCGACTTTGTAAATCGCTCGCCGATTGCTTTCTACTGACAATGGTTTCATCAGAAATAGCTCCgatttttag---caatttttcatTGTTAAAATTATCTAGGTATTCTTCATTCAAGACGTCGTAA---TTCTCTGTCACCATACTAATACCATCCAT
i caeJap4.Scaffold54    C 0 C 0

a score=-1123.000000
s ce10.chrX               682779 3 + 17718866 CGC
s cb4.chrX              21154303 2 - 21540570 TG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3477362 3 - 33334924 ttc
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      168233 3 +   258924 TAC
i caeJap4.Scaffold54    C 0 I 3582
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeRem4.Crem_Contig24   469653 0 -  1162296 C

a score=69.000000
s ce10.chrX               682782 2 + 17718866 GC
s caeSp111.Scaffold629   3477365 2 - 33334924 ac
i caeSp111.Scaffold629  C 0 I 1432
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21154305 0 - 21540570 C
e caeRem4.Crem_Contig24   469653 0 -  1162296 C

a score=2060.000000
s ce10.chrX               682784 63 + 17718866 TGTCCCCTAGG-----TTGATGAAAAAAT--GATGATACTTGTGGGAAAAAAAAGAGAATAGAGGGAGGA-----------
s cb4.chrX              21154305 69 - 21540570 -GGAGCCTAAGATTTATATATGAGAAAGT---ATGATACTTGTGAGA--------AGAATATAAAGCGGATAAGAAGAGAA
i cb4.chrX              C 0 I 731
s caeRem4.Crem_Contig24   469653 67 -  1162296 ---GGCCTAGG-----TTGgtgaaaaattatgatgatACTTGTGAGA---GAATGAAAGTGAATGGTGGATGCGGAGT---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I

a score=689.000000
s ce10.chrX               682847 165 + 17718866 CTTAATAATCTCG---------------------TGGAGGAGTTTGGCAATGAGAATCGCGACAAAAAAAGGCATGTGAGATTTTGAAGGATTTAGGCTAGATGGGCAAGGAGGAAAAAATTGATAGAACAACAATATCAAAATTGTATTTGC--AAGAAGTAGACCGAATG---TAAAATGAATGTAACA
s caeRem4.Crem_Contig24   469720 180 -  1162296 GTTATTAATcccgaaaaacgaaaacatttcagattgGAGGAG--GGGATTTGAGCAGATTAACgaagaaatgagtgtggga----gaaagagaaaga--agaaaaacca--aagaaacacatggctcagaaaaaaTATCTGGATGTTGTTTGTCAGAGAAGT-GACCTTATGATTTGAAGCTAATATAACA
i caeRem4.Crem_Contig24 C 0 I 1747
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21154374 731 - 21540570 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I

a score=0.000000
s ce10.chrX               683012 1944 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21154374  731 - 21540570 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I
e caeRem4.Crem_Contig24   469900 1747 -  1162296 I

a score=5098.000000
s ce10.chrX               684956 325 + 17718866 CCAGTTTTGAACGCTAAAAATATTAAGGTACAGTACTAATTTCGATACATTTTCAAATCAAA-TACGTGCTTACTGCAAAGCTA-GAGCAACACCTCAGGAAAATAATGTGCTCCACATTTACGACGCAGTGTTGTCAGGAAAATGAAGTGAGGAAAAGTGCGATTTGCACACAGCTCCTTCTCCTCCTTCTTCTTCTACT--TTTTCACAAGAATACTCCATTTGACTCGTCGTTCTCTTCATCTTCTATTCCATTCAAATG-CATTATATTGAGAAAAGAAAA-----------AGAAAC----CGGACATGCAATTACGGCACGAAGAA-------------ATAGAGCTGTTCC
s cb4.chrX              21155105 334 - 21540570 CCAGatttaaatagaaaaaaactataacTACAAAAATACTGCCG---CATCTCCAAATCAAAAGAAGTGTCAAGTG--AAGCAAAGAAATATGCCTGAAAATAACTCTCAACACCACCTCTCGTCTTCTCCGTATTCAGGAGCATGAAA----ATAAAGTGCCATTTGCACACTACTTTTGCTC----TTCACCATCTCCCGGTTTCCGTCTCAACACCCTATTTGACTCGTCGTTTTCCTCA-----------ATTCAAACGACAGCGTATtgagaaaaggagagaaatgCGCTTGAAAACGACGCGGACATGTAATTACGGAAACGAGAAGGAATATGAGTCTATAGAGATGTTCC
i cb4.chrX              I 731 I 616
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I
e caeRem4.Crem_Contig24   469900 1747 -  1162296 I

a score=0.000000
s ce10.chrX               685281 1296 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21155439  616 - 21540570 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I
e caeRem4.Crem_Contig24   469900 1747 -  1162296 I

a score=518.000000
s ce10.chrX               686577 10 + 17718866 AATAGCGCAA
s caeRem4.Crem_Contig24   471647 10 -  1162296 AATATctcaa
i caeRem4.Crem_Contig24 I 1747 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21155439 616 - 21540570 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I

a score=-351.000000
s ce10.chrX               686587 23 + 17718866 -------GCATAAACTGTTGAAATCAATAT
s cb4.chrX              21156055 21 - 21540570 -------GTATGAACcaatagaa--aaaat
i cb4.chrX              I 616 C 0
s caeRem4.Crem_Contig24   471657 26 -  1162296 acttcaattttcaatca--aaaa--aatat
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3477367 1432 - 33334924 I

a score=32267.000000
s ce10.chrX               686610 204 + 17718866 CAAACCTGTCTTCGGTGAGCCGATGCTTGTGTCTCAATGGAGTTGAAGATGAATT---GATAGTAGTAGTTGTGGGG------GTGTCAGTCATCTGAAA--------CGAA------------AAGTGA-ATACAATTCTTGTTATGTCGCTCTGAGAAATAGAGAGAAAGTAAGTGTGTATGAACAACGAAAAA---GTGAGGGA-----CATCCGCCAGACACTAATTGTTTTCAGCAT-------------
s cb4.chrX              21156076 209 - 21540570 caaacctGTCTTCCGTGAGTCGATGTATGTGTCTCAGTGGTGTGATGGATGTAGT---GACTGTGCAG---GGTGAAATGATGGTGTCGGTCATCTGCAATGACAACATAAA------------AACAAA-ACCCACTTTCTGTgaagtttttttgagc--------------taggaaatgtgagagaaaaaaaagaggtgaGGGGAATGCCATCCGCGAGACGCTAATTGTTTTCCACAT-------------
i cb4.chrX              C 0 I 293
s caeRem4.Crem_Contig24   471683 206 -  1162296 caaaccTGTCTTCTGTGAGCCGATGCTTGTGTCTCAGTGGAG---TAGATGTCGCTTGGATAGTGTTG---GTTGGA------GTCTcaatcatctgaaa--acaaaaaaaa-atacagaaaagaacaaacacaaaaattttgttatgtCACTCAGAGT------------------ATATGTGTACAACGaaaaaaaCGTGAGGGG---GGCATCCGCCAGACACTAATTGTTTTCAGCAT-------------
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold629   3478799 202 - 33334924 CAAACCTGTCTTCAGTAAGTCGATGTTTGTGCCTCAACGGAGTTGTTGAAGTAGT---GATAGTGTTGTTCGTTGGA------GTGTCAATCATCTGAAA--CCCATAAAAACATAC-------AAGAAA-ACTGAAGTTTT-----TTCACTCAGAGA----------------GAGTATGTGTAcaacgaaaaaa--gtgaaggg-----CATCC------CACTAATTGTTTTCAGCAAGCAAACCTTGCCT
i caeSp111.Scaffold629  I 1432 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=-4811.000000
s ce10.chrX               686814 278 + 17718866 ---TTTTTGGTGGTGAAGAAGAACA---TAAAAATGTCT------TGCGGAAA-ATGCGGCTCCAAAAAGGAAAAA--AAATGAAATTGCACGGGAAACGTAGAACGGATTTGTGAGGGGAAAACACAGAAAATCGAAATAAAACCGATATGTTTATGAGACGGAAAAAAAGAAAATGAAAACATAACATTGAATTGAATGC-AGACTCCACGT-------TATTTATTTTTTCATCTTCTTTTTTTATTTTTCATCATAACTAATAAGT-----GGAAAGATATCTGAGGGGGGCT----TAGTTTTAA
s caeRem4.Crem_Contig24   471894 233 -  1162296 CCTTCCTTGGTAAAAGAAAATACGACTTTGAAGGTGTTTTTCGTTTTCGGTGACGTGTCACTACAAGAAAGGACAG---ATTGATATTTTGTTTGAA------------------------AGtaggaaaaaatgttgat------ggTCAACTTT-------ACAGAGGGAAACATGAAG--------------AAAATTT---CATCCATGg---------cttctcttctctcatctGTCAATTCTTA-------TTATGAACAGAGCCAATGAATAGGAATTC----AACTTTGAAGTACTTCTGA
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3479001 256 - 33334924 ---CcttttggagaaaagaagaaaacttgaaagGTATTG---------------GTGTGACTATGAAAAAGGGTAGAAAAGAGACAGaacaattgaa-----------------------gaaaaacggaaaatgttTAT------CATgagcttttgaaaaaaaacatgagaaCATGAGGAGAAGTGTGTGAGCAAAATTTGTGAATTCATGGATGtatgtatttattttttcccgtTAATTTATTATTCATGCCCTTTAttaatgaaaca---gaaaagatattctgaaaatttt----tatttttaa
i caeSp111.Scaffold629  C 0 I 1851
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21156285 293 - 21540570 I

a score=-1918.000000
s ce10.chrX               687092 224 + 17718866 TGAATAGGGCATTGGAAAGATCAGAATTTATGAACAATGGTAATTTTTACGAAAATTGATTATCTTGGTTTTTTTCATTATGCGAAGAAAAAAAAGAATTTATATGTCTTCCGTTGTTTAATCAGTGCAACCCACATTGAATTGAAATTTGGTCAGTGCGACTTCAAAAGTCTACCAGTGTTTTGGTCAGAAAAACGAAATTGTGCGAAATAATAAAAAAAGAC
s caeRem4.Crem_Contig24   472127 145 -  1162296 GAATTATAAATGTTGATAGATCAAA------GAA-----GGACCTGTTGTAAAA----------TTGGACTCATCctttata-----------------------gttttttgctgATAAA--------------ATGGA---GAAACTAAGT------------AAAACCATACCTATAGGGTGCAaggaaatataaaatt------aataGTGAAAATGGTT
i caeRem4.Crem_Contig24 C 0 I 164
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21156285 293 - 21540570 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I

a score=0.000000
s ce10.chrX               687316 165 + 17718866 CGAGAATTTTGATAGTTATGGTCAGAGCAGCAAATATTTTTCTAGGAACATTTTGGGCAAAACTTCTAGGTTCTTAAGCAGTGCTGCATAAAATAGTATTGAATTGATTTTTATTTTAAGAATTTTGTTACAAAAATGTTCCTCAATATTATTAAAACAGTTCAT
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21156285 293 - 21540570 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I
e caeRem4.Crem_Contig24   472272 164 -  1162296 I

a score=31.000000
s ce10.chrX               687481 134 + 17718866 TATACT--CCAGTGTCTAGACAAGTTACTGTGGAACACACATCCTTCTACCCTGAACATTTAGCAACAAAAACACAAA-ACCTCAACTGAACCCCTTTTAAAATAATTGAAATTTTTT----TTTGCTGAAACCTTTGAGA------
s caeRem4.Crem_Contig24   472436 142 -  1162296 TATACTGCCTAAAGTCTAGACAATTCTATACGAAATAT---TCCATGAGGATTCCAAACTTAACGGAGAAAACAGAAGTAGATCA--TAAATCTCTATACGAAAAAGGAGAATgctttcaaataaattaaaactttcGGGGCGGTGT
i caeRem4.Crem_Contig24 I 164 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21156285 293 - 21540570 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I

a score=24950.000000
s ce10.chrX               687615 348 + 17718866 ATAATTTGCGAGTACGAATAATGATAAATG----------------ACGACGCTGAGGACATCTGTGAGAGAAAGAGAGCAGTCGGAAATTCAATTC-----TATATTCTCTCCCTCTTCTCGAAAATGCTCGAAATTTAATGCC-----------------------AGG-----------ACGTCGTCAACTAAGATTCGATGGCGTGAAAGCGAATTGAGATGTGGAGAACAAAAATGTCTGATGCGAAATCCTTTTGTTCCTAACAAGAAT-----TTCAACAGAGAAA----------AAACCTCGAACTTTTTTG-------------------AGAAGGGAAA-------------------------AAAAGGAAGA-----------------------AACCAAGCAGGCCAG--CCCCATAAGCCAACACTGAATTCGATTGAAAATGGGCTTCTCAATGTTTCGACACTTTTCTT---
s cb4.chrX              21156578 440 - 21540570 ATAATTTCAGGTTACAA---ATGATAAATG------------TTGGCCGAAACGCATGGCATCTGAGAG-----GGGAGAGGCCGGAAATTCAATTCTCAAATATATTC---------TTT--------CTCGAAATTTAATGCCATCCCACGACGACGATGACAGCTAGTGGCATCTCTCCACATCGTCAAATAAAATTCGTTGGCGTGAAAGCGAATTGAGCTGT------------CGGCCGAGGTGCAAATCTCTTGTTCCTCGCGCGGATGAAAAGTGAATAGAGCAC-GATTATTTGAAAGGATGAACTTTTTGCCAATGGATTcgaagaaaataaacgagaaacgagaaaagaagaagcagaagcagcagaagacagacgacagaaCTTCTTTTGGGGGCAAAGCAAGAAAACTAGTACCCCGCGAGTCCACACTAAATTCAATtggaaatgaatttttcattgttttgaaACCGCATTTCGT
i cb4.chrX              I 293 C 0
s caeRem4.Crem_Contig24   472578 405 -  1162296 ATAATTGGAAAGTACAA--TGTgataaatgaataaatgacGAGAAACAGGAAAGGAGGGCATCTGAGAG---------CAGCCCGGAAATTCAATTCTCAAATATATTC------TCTTCT--------CTCGAAATTTAATGCCAC----------CGTCGACAACTAGG-----------ATGTCGTCAAATAAAATTCGATGGCGTGAAAGGGAATTGAGCTGT------------CGTCCGAATGGGAAATCTCTTGTTC--TACGGagatgaaaagtgaaaagagcaAGGATGATTTGAAAggatgaacttttttt---ttgggccacagcaaaaaaaagagaaacgatgCTAGCTG--GCAGATGT-TTAGAGGCAAGA--AAAGCAC------------CAAGTAAAGGAAACGAG--CCCCATGAGCCAACACCaaattcgattgaaaatgagtttctcaatgtttcgacacttctttt---
i caeRem4.Crem_Contig24 C 0 I 1752
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I

a score=327.000000
s ce10.chrX               687963 8 + 17718866 GAAGTTGT
s cb4.chrX              21157018 8 - 21540570 GTAGATGT
i cb4.chrX              C 0 I 2434
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I
e caeRem4.Crem_Contig24   472983 1752 -  1162296 I

a score=0.000000
s ce10.chrX               687971 2504 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21157026 2434 - 21540570 I
e caeSp111.Scaffold629   3479257 1851 - 33334924 I
e caeRem4.Crem_Contig24   472983 1752 -  1162296 I

a score=1022.000000
s ce10.chrX               690475 128 + 17718866 AAAAATGGCAAAATCAAAAAAAATTTGAAAAAAATAAGTAAATAAATAGAAATCAGCGCAATTTTCAACAACA---------------ATATCGAAAACACACGGCGAGCCCATGTTGTATTAAA---------------AAAGTACACAATAA---TAAA
s caeSp111.Scaffold629   3481108 161 - 33334924 AAAAAGAGCAATTGCAATAACAACCACCAAGAAAGaagcaaatgaaaaaaaaccaacctAATTCATACAAATGGAAATCCTTAAAGTTATATAAGAAATCCCTAACAAGCTGCCATTCTAGTAAATATTTTTACTTATAGAAAGCTTTCAAAGAAGTTAAA
i caeSp111.Scaffold629  I 1851 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21157026 2434 - 21540570 I
e caeRem4.Crem_Contig24   472983 1752 -  1162296 I

a score=278.000000
s ce10.chrX               690603 3 + 17718866 TAA
s caeRem4.Crem_Contig24   474735 3 -  1162296 tga
i caeRem4.Crem_Contig24 I 1752 C 0
s caeSp111.Scaffold629   3481269 3 - 33334924 TTA
i caeSp111.Scaffold629  C 0 I 12
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21157026 2434 - 21540570 I

a score=65028.000000
s ce10.chrX               690606 331 + 17718866 ---AAAACGATAGCATT---TTCCAAAAAACACAATACACACATGGAACAAAAACGATTATATTCATTTTGGTAATCTTCGGAATTTCATTGAGATTCCTA------CTGCCATTTTATTTTGT-TTATCCTTCCCTTTTTCCTCTCTTACCTCTCTAT-TTCTCCCCT-TTTTTACAAGAG---AGGCTTTTAGTAAGAAGGAGATGGAGAAAAAAGGAGGAATTTGCGCTTGATATCCCCCTGAGAATTCTATTGGTTATAAACAATATATTTGTCGG-----TCGGACC-CCCCTCCGCCAAAGTTATGCG------AAGAGCATGTGTTTGCACTT--------GCTTTGAGTGAGTTGTATATA
s cb4.chrX              21159460 307 - 21540570 ---AAAACGAAAGAATT---T----AAATACAAG---------------ACAAACGATTA---TCAGGCTCTTATTCT--GGGATTTCACTGCGATCCGTAATCCgcctttcattttttttcgt-tcttctctatttttacCCCTCCTT-----CCTATactcccttct-ttttttgaagagaaaaggCTTTTAGTG---AGAAGatggagaaaaaggaa--aatgtgtGTTTGATAT-CCCTTGAGAATTATATTGGTTAAAAACAATATATTTGTCGGATCTCTCGGACT-CTATT----CAAAATTATGCAAT----GCTAGCATGTGCTTGCAC----------TAGACTCCCAAGTTGTCTATA
i cb4.chrX              I 2434 I 437
s caeRem4.Crem_Contig24   474738 315 -  1162296 ---aaaactgaagaata---tttgaaaatacgAG--------------AAAAAACGATTatgttcttcttcctcttct--ggGATTTCATTGAGATTCATAATCCGCCTGtcatttgttttcttgttctctctatcttccctccccctt-----------ttttcttctattttttgaagagaagaggcttttagtgagaagaagatggagaaaaaagaa-gaatttgcGCTTGATATCCCCCTGAGAATTCTATTGGTTATAAACAATATATTTGTCCGG----TCGGACC-CTCT------AAAGTTATGCTCC----AAGAGCATGTGTTTGCACTCCTT-----TAGTTCAGTGAGTTGTATATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3481284 327 - 33334924 aaaaaaataggagaaaaaactttgaaaacaaacg----------gagtgaaaaacGATTA------TGTTCATCTTCT--AGGATTTTGTTGAGATTCATAATCCGcttgtcattttttttcta-tcccCACTCTTCTTTCTGGTTCAG-----------tccttattt-ttttgtaaaaagaaaaggcttttagtgagaagaagatggaggaaaaagaa-gaatttgcGCTTGATAT-CCCCTGAGAATTCTGTTGGTTATAAACAATATATTTGTCGG-----TCGGACCTCTCTA----AAAAGTTATGCCCTCGCGAAAAGCATGTGTTTGCACTCCTCTCTTGCCGTTGAGTAAgttttatata
i caeSp111.Scaffold629  I 12 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=259.000000
s ce10.chrX               690937 27 + 17718866 TAAAT-------GTTGT-----TGAGCTTA--ATAATTGAT
s caeRem4.Crem_Contig24   475053 36 -  1162296 -AAATGAGTGA-GATGTGGAGAGGAGTTTATtataatt---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3481611 37 - 33334924 aaaattattgatgCTGT----CTGAGTTTATTATAATTCAT
i caeSp111.Scaffold629  C 0 I 475
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21159767 437 - 21540570 I

a score=843.000000
s ce10.chrX               690964 14 + 17718866 CATCAAGATTCGTT
s caeRem4.Crem_Contig24   475089 14 -  1162296 catcaaattttgtt
i caeRem4.Crem_Contig24 C 0 I 421
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21159767 437 - 21540570 I
e caeSp111.Scaffold629   3481648 475 - 33334924 I

a score=0.000000
s ce10.chrX               690978 1620 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21159767  437 - 21540570 I
e caeSp111.Scaffold629   3481648  475 - 33334924 I
e caeRem4.Crem_Contig24   475103  421 -  1162296 I

a score=1230.000000
s ce10.chrX               692598 153 + 17718866 TTTTTACGTATTTTATACGTTACTTTTTCAATTCAAAATACTCATAACCTTTTTGTGA---AAATTACGGCATTTCCTACCCA-AAGTTGACATTCTAATCCCCCTCAATCCTTT--GAT-TATACTCTTCAAAATAGTCTGTTTATTTCAACGCATTCA
s caeRem4.Crem_Contig24   475524 147 -  1162296 tttttgattattttctacttttcttctttta-----------cagAAACTTTTCGTGTTGTCAATTCC--CAATTTCTACTCATAAACCCACGATTTTGTTATCCACAATCCTTCCCAATGTGTGTTTTGTAAATAAACTCTCCGATTTCTGTGTTTTCA
i caeRem4.Crem_Contig24 I 421 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21159767 437 - 21540570 I
e caeSp111.Scaffold629   3481648 475 - 33334924 I

a score=-3416.000000
s ce10.chrX               692751 52 + 17718866 AATTTTTTTTACAACGA-----ACAAACATCAACTGCATCCCATTTGATTACGTAGA------------------------
s caeRem4.Crem_Contig24   475671 55 -  1162296 ----------------------CCGATTGCCAACA-CATC---AACAACAACCGAATTTGCATACCACATCCCCATGTATC
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold629   3482123 64 - 33334924 aatttttgtttcattcaaaataccAAAAGTCAATATTATCCCAAACAATAATCTAATTACCATA-----------------
i caeSp111.Scaffold629  I 475 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21159767 437 - 21540570 I

a score=52682.000000
s ce10.chrX               692803 293 + 17718866 TTATGATAATGATAATAAGTGCAACTGTTCAGGATACCTACAATAGGGTGGGGTTT---------CATATCTAC-GTGTGTCT-GTGTGTTTGCAG----AAATAGTGTTCTCGGGTGGGAGGTCGCGCGCGAAAATTGG-GGCGTGGCTTGCAGGCCAGGCACAAGGGGTGTAGTGGTAAGG---------AGGGGGGTGCATTCAGTTCGAAGCAG---------CAAGCCAAAAGCA--------------CCGGCAAAGCACAGG--ATGATGACAAGGATCGTGTGGCTTTTATTACTGTTAGCGGGAATACCAGCTATATCAGGTTAGTTTTGTTTT
s cb4.chrX              21160204 324 - 21540570 TTATGCTaatga-aaaaagcgaaaaagtaATGGATATCAAATGAAGGGTGGAGCCTATCTATAACCATCCCGACCGTGCACTCGACCACCGTGGAACACGAAATAGTGTGTGTTGACTAGAGATCGTGCGCGAAAATTGGGGGCGTGGCTTGCAGGCCAGG--GAAGGAGTAGACAGGAAAGAGGGGGAGAAgggggggTGCATTCAGTTAGAAGCGA-----AAGACAAGCCGAAggaatttttgaccatttttt------gcaCAGG-----ATGACAACAACTTTATGGTTGTCACTACTGTTTATCGGATTACCGACGGTATCAGGttagccttttttt
i cb4.chrX              I 437 I 100
s caeRem4.Crem_Contig24   475730 285 -  1162296 TTATCATATT-----AAGTCAAAAATCTATTGGATACC--Tcgatgggcggagtct---------catCCCGACTGTGCAGCC-CTCACcgtggaaaatgaaata--gtgTGCCGACAAGAGATAGTGCGCGAAAATTGGGGGCGTGGCTTGCAGGCCAGG--CAAGGAGTAGACAGGGAAGA-------------GGGTGCATTCAGTTGGAAGCGAG----AAGACAAGCCAAAAGCA--------------TT------GCACAGGAGAGAATGACACGGATTCTGTGGTTATTATTACTGGTCACTGGATTACCAGAAATATCAGGTAAGTATAtattt
i caeRem4.Crem_Contig24 I 4 I 7
s caeSp111.Scaffold629   3482187 276 - 33334924 TCATGATATG-----ATAATGAAAA-GTGTTGGATACC--TAGAGGGGTGGAGTCA---------CATCCCGACAGTGCACCT-CCCACCGTCCAA-ACAAAATAGTGTGTGTAGAGAAGAGAATGTGCGCGAAAATTGGAGGCGTGGCTTGCAGGCCAGG--CAAGGAGTAGAGTGAAAAGA-------------GGGTGCATTCAGTTAGAAGCAAGGCAACAGACAAGGCAAAAGCA--------------TT------GCACAGG--------ACAATGATTGTTTGGCTTCTGTTATTGTGCGTAGGAATACCCGGGATATCAGGTaagtatt-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=-1583.000000
s ce10.chrX               693096 33 + 17718866 GTTTTCTTTTTTAATTTTGGTTTGGAATCATTT--
s caeRem4.Crem_Contig24   476022 34 -  1162296 -attttcttgtttattgaagttttgaaaaacattt
i caeRem4.Crem_Contig24 I 7 I 123
s caeSp111.Scaffold629   3482463 15 - 33334924 --tttgttttgtcaTCA------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21160528 100 - 21540570 I

a score=-2164.000000
s ce10.chrX               693129 104 + 17718866 GCTGTCAAATTACACCTGTTATGGCGTCAGGTATTTTTTTTTGTTAATTTTGTAGCTAAGGAAAATAGGCTTATGTTAGATTTGAATCTGGCAAAAAAAAAACC
s caeSp111.Scaffold629   3482478  22 - 33334924 ------AAAGT------------------GGGAAGTTTTTCTG----------------------------------------------------------ACC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21160528 100 - 21540570 I
e caeRem4.Crem_Contig24   476056 123 -  1162296 I

a score=-2910.000000
s ce10.chrX               693233 44 + 17718866 AACATTTTGGTATACCTTCAGTTGCTGCTTGGAACGCTCTGAAA-
s cb4.chrX              21160628 45 - 21540570 AACATATTGCTCTAATTTTTGCAGTGGCTTCGTTTGCATCCGTAG
i cb4.chrX              I 100 C 0
s caeSp111.Scaffold629   3482500  1 - 33334924 -------------------------------------------A-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeRem4.Crem_Contig24   476056 123 -  1162296 I

a score=-1969.000000
s ce10.chrX               693277 134 + 17718866 ----------AATCAACTTAAAATTTCATTCATTCCTTTTTCATTTTTCTTGAAAGACTCATTATTCTTCTTCCAAGCCCTGCAATTCCCAAATAATTCTTTTAAAATCCTTCCTCTAATTCTCTTTTGCGAACCGAACTTTTT---
s cb4.chrX              21160673 100 - 21540570 AATTGTCACgaaaaaattcctattttagTTT--------------------GCAAAACC-----------------------CACTTTCGAAAATAATC-TCGGCAATCTTCTTCCTAATTCCACACTGCGAATT---CCACTTATA
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24   476179 113 -  1162296 ----------AAACAACCTATACTTTTGTTT---------TGGTCTTTC--TCAATaccacattttctttttt---------tcctttcaacATAATTC-CTCAAAATCCACCCGCTAATTCTCCGCTGCGAACT---CTCcccaat
i caeRem4.Crem_Contig24 I 123 I 5
s caeSp111.Scaffold629   3482501  96 - 33334924 -----------cataatt----tttccattc--------------------taaagactttttccatcatttt---------tacTTCAACTAATACCT-CCGAAAATCCTCTCGCTAATTCTCTCTTGCGAATT---TTTGcc---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=-2797.000000
s ce10.chrX               693411 47 + 17718866 -TCTTTTCTCTGCTGTTT------------------TAGTTGATTTT-------CTCCATTCCTTTCTCATCT
s caeRem4.Crem_Contig24   476297 69 -  1162296 ttttttcttctcttttttatagaaaaatgaagaagagagtaGAATTTGAAAGAGTTCGAATCCTTTTTC----
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3482597 31 - 33334924 -tcctttttctcgtcgtt---------------------tagtttcttcaaaa--------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e cb4.chrX              21160773 11 - 21540570 I

a score=33391.000000
s ce10.chrX               693458 265 + 17718866 GATGCTCCATTTTTGGGGGGGGAAAGTAATTCCCT-------AGAGTAACTGACCTGAAATGTAACTTT------------CCCAATA-------------------TTTTCCCCTTGATTGCTTAATCGCCCTTTGCGTGAATTCGAGTAG-AAATTTGTGTGTTTTCTT---------------------------AAAAGAACATAGAAAATCTCG-GAGACTTTTGGCGCCGACACACATATTTACATAATAACCTTGAATGTATCTCTCG-TATGTCATGTGCCCCCCCCCCCCCACCACTATTTTTTTCTTTTTTTCCCTTCTCTGA----
s cb4.chrX              21160784 277 - 21540570 --------------------GAAACGCTATTTTCTTCCTGGAGGGATTGCTGACCTGAAAAACaa----------------ctcgagaaa----------------tttttcTTCATGATTGCCCTTTC-CCATTTTAGTGAACTCGAGtag-aaattttccatttcttatTGCTCGTTTCTTATTTGATGGTTATATAAGGAATCTCCTTCTTTCTCG-CAGACTTTTGGCGCCGACACACTTATTTACATAATAACCTTGAATGTATCTCTCC-TATGTTATGTGCGCCTTCGCCCAT----TTCTCTAGCTGCTTTTTGCTCTCGTTTTCGTGT
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig24   476366 236 -  1162296 ---------------------------CATCTCCCTC-----GGGGTAGCTGACCTGAAATGTAACTTTCCCCCTCTCCTCCTCCAGA-------------------TTTTCTTCATGATCGCGCTTTC-TCCTTTAGGTGAACTCGAGTAGAAAATATTCTATTTCTTAT-------------TTCGGCGG------AAAAAATCTAAG------GCA-GAGACTTTTGGCGCCGACACACATATTTACATAATAACCTTGAATGTATCTCTCG-TGTGTCATG--------cgccctc----ttttttctctgctttttGCTCTC----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3482628 253 - 33334924 -----------------aatgaaaaaagatgttcTCCCTTG-GGGGCAACTGACCTGAAATGTAACTTTCCTTT-------CccgaaagaagagaagggcACACCGATTTTCTTCATGAGCGCG----------TAAGGTGAACTCGAGtag-aaatttctgattttataT-------------------------------AGACTCGG------GCGTTAGACTTCTGGCGCCGACACACATATTTACATAATAACCACAAATGTATCTCTCGTTGTGTCATGTGCCC---Cccttgc----ttttttctctcgttttttctcttttctta----
i caeSp111.Scaffold629  C 0 I 50
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=1581.000000
s ce10.chrX               693723 73 + 17718866 TTCCTGCTCTGCCTTTTTCG--CTCAAT--AGTTATTCGCGGCTTTTTGTTTCTCTTTCGGAGCTCCTTTAGTTCAG
s cb4.chrX              21161061 57 - 21540570 T---GGCTCAATCTGCTCCG--TGAAACAAAGTTATTCGGTCCAAGTCGTTTTGTTTTCTG---------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   476602 57 -  1162296 -----GCTCAATCTGCTTAGAAAGAAACAAAGTTATTCGCGGCtgccttttttgttttctg---------------g
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I
e caeSp111.Scaffold629   3482881 50 - 33334924 I

a score=2054.000000
s ce10.chrX               693796 106 + 17718866 CCGTTTAA-TAGTGTGAGAGGGG----AGAAGATG-----CCCGAAA--TCAGTAGTACTCATGTTCAAACA---TTTCAAACATTTCAAAGA-------------GA-AAATCGGT-------------------------------GAGGGGCCTAGG----GATGAG
s cb4.chrX              21161118 133 - 21540570 CCAGCTGA-GAGTGTATGTGTGA---GAGAATTCG-----TCATGAT--TGTGTACTACTTGCATTTGAAGA----TTTCAACATCTTGAAAAGCAC---------AGTAAATCGGT---------GCCTGTGTATATGAAACAACAGGAGTAAAGAGAA----GACGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   476659 159 -  1162296 cCAGTTGA-TAGTGTGAAGGCAACGCCAGAAACCGAATGCCTATGATTATATGTAATACTTGTGTTTGAACattatttcaaacatttcaaaagtcAT---------CG-AAATCGGTAGAAAGCAGGGCTAAATCggtgaaagaagagaaaagagaggaaacggGATGAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3482931 125 - 33334924 TTGTTTCATGGGTAGATAGGGAAAGATAGATTTGT-----GCATGAT----TGTAGTACTTATGTTTGAaca---tttcaaacatttcaaaagcCCTGAGGAAAGGAG-AAATTGGT---------GGC-------------------GAGAGGAAGGAA----GATGAC
i caeSp111.Scaffold629  I 50 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      168236 3582 +   258924 I

a score=62404.000000
s ce10.chrX               693902 207 + 17718866 TGAGTAAACCGC------------CTCCGATAAGAAGTTGCTTATTAGCTAGAGGTAAATAAGTA--GGTTGAAAAGTGG--------------------------------------------AAGTGCAGTGGC-------------GGGTTCGATCACACAACTTACCAAACAAAACGGGCGGCCAGCCAGGGGGGGGGCACACTCGAAAATAGA-GACGA---------------TTTGATGATTGGCTCGTTT------------AGGAGAAGGCAGACAGT---AGAAAGT----------------TGAAG------------G---GGAA---GA
s cb4.chrX              21161251 279 - 21540570 TAAGTAAACcgcctctctctttttctccaatAAGAAGTTGCTTATTAGCTATAGGTAAATAAGTA--GGTTGAAAAGAGGAGAGGTAGGCAGGCAGTCAGAAGCAGCCAAAAAGTGTTCACAGAAAGTGCAGCGCG--------------GGGTGGATCACACAACTTACCAAACAAAACGG---------CA---------CACACTCGAAAATAGACGACGGGCAGCGACCAGCGCTTTTGATGATTGGCTCGTTT-----------AAGGAG-AAACAG--------AGATagg--agaaaa--------tgaagatgaaCAAGTTCGGGTGAAGAATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   476818 250 -  1162296 TAAGTAAACCGC------------CTCCGATAAGAAGTTGCTTATTAGCTATAGGTAAATAAGTA--GGTTGAAAAGTGG----------GGGCAGCATAGAG-----AGAGTGTGTTCGTAGAAAGTGCAGAGCG-------------CGGATGGATCACACAACTTACCAAACAAAACGG---------CA----------GCACTCGAAAATAGACGACGG--CGCGACCA-----TTCGATGATTGGCTCGTTT------------AGGAG-AAGCAGACAGTAGAAGATAGGCAGAAAAA--------TGAGGATGAATAAGTT-Gtgtgaga---ga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3483056 269 - 33334924 TAAGTAAACCGC------------CTCCGATAAGAAGTTGCTTATTAGCTATAGGTAAATAAGTAGGGGTTGAAAAGTGG-GGGGTAGGcaaggagagagaa------agagagtgtTCGCAGAAAGTGCAGTGTG-----------GCGGGGTGGATCCCACAACTTACCAAACAAAATG----------------------ACACTCGAAAATATAGAGGGA--GAAGACGCGCGGTTTTGATGATTGGCTCGTTT-----------AAGGAGTGAACAGACAGTCGAAGATGGA--AGAACGAAGGCATTTGGAGATGAATAAGgt-g---gaga---ga
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      171818 234 +   258924 TGAGTAAACAGC------------CGCCGATAAGAAGTTGCTTATTAGCTATGGGTAAATAGGTA--GTTAGAAAAGTGG----------ATG---------------GCGGAGTGTTCGTATGAAGGACAAAGCGACTACGACCACGCCGATTGGATCACACAACTCACCAAACAAAATCG---------------------GCACTTAAA--------------ACAGACCAGCGTTTTTGATCATTAACTCTCTTAGATTATATGTATGAAG-GGGTGGATAAtataaaaacgt----------------taaaaaaaaaaa------------------
i caeJap4.Scaffold54    I 3582 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=33050.000000
s ce10.chrX               694109 93 + 17718866 AGCG--AAGGAACATGTTTCACATCTAA-TCCCTCCAAAACTCATTG------AGAGTACCGCTAATAGGG-CGCAAATATACATGTTATTCGAAACTGCTGC
s cb4.chrX              21161530 96 - 21540570 AGAGGCGAAGAACATGTTTCACAACTAA-TCC-----AAACTCATTGAGACAAAGAGTACTGCTAATAGGA-CGCAAATATACATGTTATTCAAATCTGGCGC
i cb4.chrX              C 0 I 326
s caeRem4.Crem_Contig24   477068 91 -  1162296 agag----agaacatGTTTCACATCTAA-TCC-----GAACTCATTGAGACACAGAGTACCGCTAATAGG--CGCAAATATACATGTTATTCGAAGCTTGCGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3483325 94 - 33334924 agag----agaacatGTTTCACATCTAATTCC-----GAACTCATTGAGACACAGAGTACCGCTAATAGGGCCGCAAATATACATGTTATTCGCTGCCGCCGC
i caeSp111.Scaffold629  C 0 I 153
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052  0 +   258924 C

a score=306.000000
s ce10.chrX               694202 8 + 17718866 TTGCCCAC
s caeRem4.Crem_Contig24   477159 8 -  1162296 TTTTCCGC
i caeRem4.Crem_Contig24 C 0 I 227
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052 0 +   258924 C
e cb4.chrX              21161626 326 - 21540570 I
e caeSp111.Scaffold629   3483419 153 - 33334924 I

a score=0.000000
s ce10.chrX               694210 718 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052   0 +   258924 C
e cb4.chrX              21161626 326 - 21540570 I
e caeSp111.Scaffold629   3483419 153 - 33334924 I
e caeRem4.Crem_Contig24   477167 227 -  1162296 I

a score=1378.000000
s ce10.chrX               694928 141 + 17718866 TTTTAAAAGTCAGTTTTGTTCCCATTTTTCAAAATTCGGTCTTCGAGCATCTTCAGGTAAAGAACAAATTTTTCTATTAACCT------CTCTTATATTCTGCCCCTCTTCACATTGTTTTTAACAGTAGCTATGTAGCTAACCATG
s caeRem4.Crem_Contig24   477394 123 -  1162296 ttttttgagacagttttctttt--tttgacagaGTTCAGTTTCCAAGTGTCCTCTCGT----------TTCCTGGAACCACCTGAGATCCTCTCCTACTCACCAAATCTCCCTATTGTTTTTCA------------AGCTAGCCACC
i caeRem4.Crem_Contig24 I 227 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052   0 +   258924 C
e cb4.chrX              21161626 326 - 21540570 I
e caeSp111.Scaffold629   3483419 153 - 33334924 I

a score=1310.000000
s ce10.chrX               695069 11 + 17718866 ATGTTTTTGCG
s cb4.chrX              21161952 11 - 21540570 ATGTTTTCACT
i cb4.chrX              I 326 C 0
s caeRem4.Crem_Contig24   477517 11 -  1162296 TTGTTTTCCCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052  0 +   258924 C
e caeSp111.Scaffold629   3483419 153 - 33334924 I

a score=18684.000000
s ce10.chrX               695080 146 + 17718866 ATGCCAAACAGC----ACTTGTTAGTCCAACTCGGCGC--AAATGTGTCAATGACATTG---------------------TGTTTGCGATGTTCCTCAAATCTCAACTACAAACAGTGTG---CCATCGTTCGTTT-----------TTCCTCGGAAGT-----AGAAAACGGAAATAGAAGAATAATCTTG
s cb4.chrX              21161963 164 - 21540570 ATAGCAAATACTT---ACTTGTTAGCTCAGT----------AATGTGTCAATGAAATTGTATGATGTTCATCTTTTTGGATGTTTGCGATGCTTCACAAATCGCAACACCAAACAGAACC--CATCTCTTCCGTTC------------TATCGAGTCGCATGAGCAAAAACTGA-ATTGAGTTGTGATAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   477528 189 -  1162296 ATGGCAAATATGTAGCACTTGTTAGCTCAACTCGAAGC--AAATGTGTCAATGACATTGTGTgatgtttctctttttgtctgtTTGCAATG-TTCACAAATCTCAATAACAAACAGTACTTGCCCCTCTTCCGTTCCTGCCAGAAAGTTAttggaaaaatagataaaaaagaGATATACAGTTATGAAACCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3483572 151 - 33334924 ATGCCAAGCATC----ACTTGTTACCTCGACTCGAGGCAGAAATGTGTCAATGACAGTATGTGATGT-----TTTCTGTCTGTTTGCAATG-TTCCCAAATCTCATCAGCAAATAAGACA-------CTTTCGTTC--------------CTGAGCagc-----aaaaaataga-----aagagtAACCCCT
i caeSp111.Scaffold629  I 153 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172052   0 +   258924 C

a score=171798.000000
s ce10.chrX               695226 488 + 17718866  
s cb4.chrX              21162127 522 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   477717 492 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3483723 464 - 33334924  
i caeSp111.Scaffold629  C 0 I 114
s caeJap4.Scaffold54      172052 364 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-2587.000000
s ce10.chrX               695714 6 + 17718866 TGG---TTT
s cb4.chrX              21162649 9 - 21540570 AAGTGGTTT
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24   478209 3 -  1162296 GAG------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      172416 6 +   258924 ---GCGTAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I

a score=-644.000000
s ce10.chrX               695720 14 + 17718866 TTATTTGATTTG------AG
s caeRem4.Crem_Contig24   478212 20 -  1162296 TCAGATGATCTGGAAATCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      172422 14 +   258924 ------GTTTTTCCTTTCAG
i caeJap4.Scaffold54    C 0 I 1
e caePb3.Scfld02_62         5396 15092 +   783054 I
e cb4.chrX              21162658 11 - 21540570 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I

a score=639.000000
s ce10.chrX               695734 28 + 17718866 GGAGAGACAAAAAGTGAAACATGAAACA
s caeRem4.Crem_Contig24   478232 28 -  1162296 TAGAAGACTGAAAACATAACTCGAAATA
i caeRem4.Crem_Contig24 C 0 I 90
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172436  1 +   258924 I
e cb4.chrX              21162658 11 - 21540570 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I

a score=0.000000
s ce10.chrX               695762 398 + 17718866 TTTTGAAATATTTAGTGCACCACTGCACTAAATGTATTATGATAATTAGATATAAATTGACCGAATTTTTTTTGAAAACTTTACTCTCCGTAAACTCTGTATTATTACCTTCACTGCCTCAATTTGGCTGTACATATCTCGCTTGCCTTTGGTTTTTTTACATATAATTTAACTAGAATCTTATATAAAATAATTTCACGGTTAAACATTTGTTATGGAACCGAAAACCATCAAGAGCTGTCATACCAGCAAAAAATGGTGCAAAGTCTTGGGAAGTCAATGCATAGGGGATGCAATCTGAAAAGAATAGATACTCCTACTTTCTAGAAATCTTCAACCTAAATTTTTTTTCATTGCCTGAAAGCGAGAAAATCTTGTTTATCTCGTCTTACTAAATA
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172436   1 +   258924 I
e cb4.chrX              21162658  11 - 21540570 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I
e caeRem4.Crem_Contig24   478260  90 -  1162296 I

a score=1214.000000
s ce10.chrX               696160 54 + 17718866 CTTGAGAACGTGCTTCCTGACATTGAAATTTGAGTTTTTACTTTTTTGCTTGTT
s cb4.chrX              21162669 43 - 21540570 CTTGAGAAGGTCTTTCTTGTTATtagaa-----------acctttttttctgta
i cb4.chrX              I 11 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172436  1 +   258924 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I
e caeRem4.Crem_Contig24   478260 90 -  1162296 I

a score=-2527.000000
s ce10.chrX               696214 34 + 17718866 T------TCCTGTTTTCAGAAAAA--AAATTTCTATCTCATA-
s cb4.chrX              21162712 38 - 21540570 accCGAATCCTGTTT---GAAAAACCAAACAGcaaacgaat--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      172437 36 +   258924 ------TTCCAGCttccaaaataaataaattaataaataaa-c
i caeJap4.Scaffold54    I 1 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I
e caeRem4.Crem_Contig24   478260 90 -  1162296 I

a score=729.000000
s ce10.chrX               696248 2 + 17718866 AT
s cb4.chrX              21162750 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   478350 2 -  1162296 AT
i caeRem4.Crem_Contig24 I 90 C 0
s caeJap4.Scaffold54      172473 2 +   258924 AT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeSp111.Scaffold629   3484187 114 - 33334924 I

a score=83282.000000
s ce10.chrX               696250 156 + 17718866 -----TTCAGATCCACCAAAGTTCCTGAACGTTCAAGAATCCCAACATCCAGAGGAAGGAACACGTGCTGAAATCGTGTGCGAAGTCGAGGGCACTGACCAACTCGAGGTTTTCTGGCAATTCAATGGTGTCACATTAGACGAGAGTAA----GTATG--CACATGC
s cb4.chrX              21162751 162 - 21540570 -----ttcagatccccCAAAATTCGTCAATGTACAAAACGAGCAACACCCTGAAGAGGGAACTCGTGCTGAAATCGTCTGCGAAGTGGTGGGAACTGATCAACTCGAGGTGTTTTGGCAGTTTAATGGCGTTACCCTGGACGAAAGTAAGTGTGTCTAGCCGCGTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   478352 158 -  1162296 -----TCCAGATCCACCAAAATTCCTTAACATCCAAGAGGAGCAACATCCAGAGGAAGGGACACGTGCCGAGATTGTGTGTGAAGTCGAAGGGGACGATCAACTCGAGGTTTTCTGGCAATTCAACGGTGTCACCCTGGACGAGAGTGA----GTTTAGCCACATGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3484301 158 - 33334924 -----TTTAGATCCCCCAAAGTTCCTGAATATTCAAGAAGCTCAACATCCTGAAGAAGGAACCCGTGCTGAAATTGTATGTGAAGTCGAAGGAACAGACCAACTCGAAGTCTTTTGGCAGTTCAACGGTGTTACCCTAGACGAGAGTGA----GTTTTGCCACATGT
i caeSp111.Scaffold629  I 114 C 0
s caeJap4.Scaffold54      172475 161 +   258924 TCCAATTTAGACCCTCCAAAGTTTGTAAACCCGATTGAAGAACAGCATCCGGAGGAAGGAACTCGAGCAGAAATAGTTTGCACAGTTGAAGGAACCGATGAACTGGaagttttttggcaatttaatGGTGTAACCTTAGACGAAAGTGA----GTTTGACCATGC--
i caeJap4.Scaffold54    C 0 I 301
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=25759.000000
s ce10.chrX               696406 655 + 17718866  
s cb4.chrX              21162913 790 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   478510 593 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3484459 590 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      172636 301 +   258924 I

a score=170549.000000
s ce10.chrX               697061 382 + 17718866 ATC-TTTTCAGCTTCTCAACGCGGGTACGAATTTTCTGAGAATAATCAAATTCTCTACATTCCACATTTTACCGCCAAAAAAGATGACGGAATCTATAACTGCAACGCTGCCCAGTACTCTTCATTCGAGACCCTCTCCGTAAATGTCACTGGATATGGTGAG---------------TGTGGGAAAAATTGGAATTTCAAATAGCCTTATCGATACATAATCTCATTTTCGTAGCGCAATAC---TGCCCC--TAG-----------TCACACATTAAT--TATTTCAGCGCGCCCTACAATTACCGTGTTCGATGTGCCAAATGGAAACCGAGGAATCGAGGGGCACACGATTGAGCTCAAATGCGGAGCCGTCGGAAAACCAAAACCCACCTATAAGTGGTTTTTTGAGGTAA-
s cb4.chrX              21163703 398 - 21540570 AACCTTTTCAGCTTCCCAACGTGGCTACGAATTCTCCGAGAACAATCAGATTCTCTACATCCCACACTTCACTGCTAAAAAAGACGACGGAGTTTATAACTGCAACGCTGCTCAATATTCATCCTTCGAAACCCTTTCAGTAAATGTTACTGGCTATGGTGAGTACGCGTGCGATTTGTGTGGGAA-------ACGTTTCAATGCGTTTTTCG---TATAAC-------TCTTAGTCTTCTCCATATGTCCCATCCTCGCACTATAGCTCACACATTAATTATATTTCAGCGCGCCCCACAATTACGGTATTTGATGTGCCAAATGGAAACCGCGGAATTGAGGGACATACGATCGAGCTCAAATGTGGTGCCGTCGGAAAACCAAAACCAGCCTATGAGTGGTTTTTTGAGGT-A-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479103 380 -  1162296 ----TTTTCAGCATCCCAAAGAGGCTACGAATTCTCCGAGAACAACCAAATCCTATACATTCCACACTTCACTGCTAAAATTGATGATGGAGTCTACAATTGTAATGCTGCCCAGTACTCTTCCTTCGAAACGCTGTCAGTGAACGTGACTGGCTATGGTAAG-----------TTAGTGtgggaa-aatatgaattctcAATATGTCTCCGA---TATAATCT--TCATCTCAGTTTTCTTC---TGTCCCGCTTT-----------TCACACATTAATTATATTTCAGCGCGCCCTACAATTACTGTATTCGACGTGCCAAATGGAAATCGAGGCATCGAGGGGCATACAATTGAGCTCAAATGCGGTGCTGTCGGAAAACCAAAACCCACCTATAAGTGGTTTTTTGAGGT-A-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3485049 348 - 33334924 aTC-TTTCCAGCATCTCAACGAGGCTACgagttttcggaaaacaaCCAAGTTCTTTACATCCCACATTTCACTGCAAAAATTGACGATGGAATATACAACTGCAATGCTGCTCAATACTCATCTTTTGAGACCCTTTCGGTTAACGTAACCGGCTATGGTGAG---------------CGTGGGA--------AATCTTGAA---------------------------TATTGGATTTATTA---TATCTCAGTAA-----------TCACACATTAAT--TATTCCAGCGCGCCCTACAATTACGGTATTCGATGTGCCAAATGGAAATCGCGGAATCGAGGGCCATACAATTGAGCTCAAATGCGGTGCCGTCGGAAAACCGAAACCTACCTATAAGTGGTTTTTTGAGGT-A-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      172937 330 +   258924 ATC-ATTTCAGCTTCCCAAAGAGGTTACGAGTTCTCGGAAGACAATCAAATCCTCTACATTCCTCATTTCACCGCCAAAATGGATGATGGAACCTACAATTGCAACGCCGCACAATACTCGTCGTTTGACACCCTTTCCATCAATGTTACGGGATACGGTATG----------------ATGGAA-------------CGAA--------------CATA---------TGGTAA-----------AGACTAGATTG-----------TCAC---TTTAT--------AGCTCGCCCCACAATTACTGTATTTGATGTGCCAAGTGAGCACAGTAGTGTGGAAGGTCAAACGATTGAGCTGAAATGTGGAGCTGTTGGAAAACCGAAACCGACTTATAAGTGGTTCTTTGATGT-AA
i caeJap4.Scaffold54    I 301 I 539
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=32145.000000
s ce10.chrX               697443 116 + 17718866 TACAATTTG---GGGGAAGGATGGGCTAGCCACCTGTTGCAATGTTTATCAATTAGTAATTTGAAACTG---AGAGCGGCACCGGCCTCTTTGTG-----------TGCTCTCAATATGCCATAATGGGATTA
s cb4.chrX              21164101 127 - 21540570 CTTAATTTATGATTGCAAAGCT---TCTACCACCTGTCGCACTGTTTATCAATTAGTAATTCGAACCTGGCAAGCGCGGCA---TTCTTTTAGTGAAGAGGTGAGGTGCTCTTGTGATGCCATAATGGAATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479483 121 -  1162296 TACAATTTG-GATTGGGAGGATAGGCCAACCACCTGTCGCAATGTTTATCAATTAGTAATTTGAAACTG---AGAGCGGCA---ACCTCTTTTTGAG-----GAGGTGCTCTCAATATGCCATAATGGGATTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3485397 109 - 33334924 TGCAATTTA--------GAGCTAGGCCAACCACCTGTTGCAATGTTTATCAATTAGTAATTTGAAACTG-----AGCggcat--ttctttttgtgcG---------CGCTCTCAATATGCCATAATGGGATTA
i caeSp111.Scaffold629  C 0 I 21
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I

a score=-1613.000000
s ce10.chrX               697559 20 + 17718866 GGGACTA-CTAGAATGCGC----CG
s cb4.chrX              21164228 19 - 21540570 GC------CCAATATAAACACTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479604 25 -  1162296 GCCCCTATCCGAAAAGCGCGTTTTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I
e caeSp111.Scaffold629   3485506 21 - 33334924 I

a score=332.000000
s ce10.chrX               697579 13 + 17718866 ATCTTTTGCATAT
s cb4.chrX              21164247  1 - 21540570 A------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479629 13 -  1162296 ATCTTCCACATAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3485527 13 - 33334924 ATCTTATGCACAT
i caeSp111.Scaffold629  I 21 I 76
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I

a score=-3676.000000
s ce10.chrX               697592 56 + 17718866 GGTCGGGGTGA-------------GAGCACAAAAAAATGCAAATATTTTGCATGATCTAA---------------CTTGT-------TGAA
s cb4.chrX              21164248 78 - 21540570 --TGTGGGGAACATCTt-------ta--gaagaattttttgaaagtttgaaaaaacccATTGAC--CTTTTTAATCTTGTGACCATTTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479642 91 -  1162296 GGTGTGGGGGATCTGTTATTATAAtaacaaataataattttatgGATGGGTGTGATATAATTGCGGCCTTTTATTCTTATAAAAGAgtgaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I
e caeSp111.Scaffold629   3485540 76 - 33334924 I

a score=40910.000000
s ce10.chrX               697648 627 + 17718866  
s cb4.chrX              21164326 674 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   479733 827 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 73
s caeSp111.Scaffold629   3485616 590 - 33334924  
i caeSp111.Scaffold629  I 76 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I

a score=-6326.000000
s ce10.chrX               698275 107 + 17718866 AGCTAAAGAAAAAGTAATTAGATCGGTTTTTTGAGTGTTAATAGGTTTGCACTGACCAAACTAGCACCGGCACTGACCGAATTGAAACGCACCAACTAATAGTAAGT
s cb4.chrX              21165000  47 - 21540570 --------AGAGAAATAAGGGACTGTTTTCA-----GTTA------------------------CATC-------------TTGAAG------AAGTTATAGT----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3486206  27 - 33334924 ----gaagaaggaaaaattggaatatttttt----------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I
e caeRem4.Crem_Contig24   480560  73 -  1162296 I

a score=-8324.000000
s ce10.chrX               698382 199 + 17718866 GAAAAAACTTTCACGTATGAAATGGAAATTGTGGATATACAAAACACGCCCGCCGCTCTCTCTTAACAAATCTGGACTTTTTAATTTTGTTTCGAATTTCTCCAAATTGTTTCCTCACATTCCTCACTCAACACCTTCAATTTCCTATGCCTCCTGGCAC---CATTGCGGTAAATCATTGATGA-GGATGTATATTGATAGG
s cb4.chrX              21165047  92 - 21540570 ---CACAA-------------------------------------------GATATTCCCATT------ACCTAGG----------------------------AATTTATTTCTTTCCC-----------------------------TCAGTTGTCAA-TTGTTTAAAATGCATTATTGATGA-AGACGAATATTGATAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   480633 157 -  1162296 TAACACAATTTCAAATATGATCTGAAC----CAGACAGA-AACACCTGTTCAATTTTCCCACT------CCTTTCACTTTCTCAGT----------CGCCGTCCAGTTCAGTTCTCCCAC------------------------CCTTGTCACTTGCCAAGTCACTTGCGGTAAATCATTGATGA-GGATGTATATTGATAGG
i caeRem4.Crem_Contig24 I 73 C 0
s caeSp111.Scaffold629   3486233 110 - 33334924 -ctttcaagtACCAGTA----------------------------------GGTATTCATCTC------CGTTATACAAC------------------------TATTCTTCATTCCCAT------------------------CTATGACCCCCGCAGA----GTTGAGGTAAATCATTGATGAGGGGTATATATTGATAGG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173267 539 +   258924 I

a score=48323.000000
s ce10.chrX               698581 200 + 17718866 GGGTCATGAATAATAAAGAT----AAACAGACCAGCGTGAAAGTTAGCATATGCATGAGGTATCACGCAAAAGGTCATTT-----TGTGGGCA--GCGGGACCCCTGACTCAGTAATAAACCGATTATTATCTCAGCATGACGTGGAATGGCAAGAGGGTCCAA---ACAAGGTCAA---TTCACAGAGTGAATACTCAATATTAGGTGAGAAATTG
s cb4.chrX              21165139 194 - 21540570 AGGTCATGAATAAAATAGATCAACAGACACACCGGCGTGAAAGTTAGCATATGCATGAGGTATCACGCGAGAGGTCATCT-GTGGTGTGGACA-----------TTGACTCAGTAATAAACCAATTATTATCTCAGCATGAGGTGAAGATGAGGAC--TTCTCA-----AAGGTCAC--ACTTCTTTATAAGAAAATTATTGTT--GTCCATAGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   480790 197 -  1162296 -GGTCATGAATAATAAAGAT----AAACACACCGGCGTGAAAGTTAGCATATGCATGAGGTATCACGCAAAAGGTCATTTCGTGAGGTGGATAGAAAGAGTGGTCTGACTCAGTAATAAACCGATTATTATCTCAGCATGAGGTGAGGAGAATGATGATCCCCACTAACAAGGTCACTAGATCTTGGGTTGCAAAATTATTG---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3486343 164 - 33334924 -GGTCATGAATAATAAAGAT----AAACACGCCAGCGTGAAAGTTAGCATATGCATGAGGTATCACACGAAAGGTCATTC---TAGGTGGATA-GGGGAGAGATCTGACTTAGTAATAAACCGATTATTATCTCAGCATGAGGTGTGTCTGAG---------CG-----AAGGTCAG---------------ATGATTATGG---------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      173806 172 +   258924 GGGTCACGAATATCAATTAT----AAATACTTTGGTGTGAAGGTTATAATACGTAAGAGATATTGCGCAAAGCGCTATTG-CGTGCGTGCCCA---------CCGTGACTTTGTTATAAAACGATTATTATAACAGCGTGAG---------------------------AGTGGCAG----CACCGAGTGAAATAATCTATATTTGCTTTGACATTG
i caeJap4.Scaffold54    I 539 I 176
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-26481.000000
s ce10.chrX               698781 691 + 17718866  
s cb4.chrX              21165333 727 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   480987 808 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3486507 617 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      173978 176 +   258924 I

a score=88079.000000
s ce10.chrX               699472 203 + 17718866 TTTATTATCAATACAGTTTTCAAATGCT----CAACGC---TTTTTAGGACGATGAAGTTCCAATCGCCCGTTCCGACAAGCATAATGTTGAAGAAGGACTCCTTATCATTGAATCTCTGAACTCTGAAGATGCTGGTACTTATAAATGTGTTGCTAATAACACAGTTGGATCAAATGAACGCACATTTGATCTTGCAGTTTTCCGTAAG
s cb4.chrX              21166060 197 - 21540570 TTCATTG---ATAT-GCCTTGAAGGAAT------GTAT---ATTTCAGGATGACGAGGTCCCGATCGCTCGTTCTGACAAGCACAATGTCGACGAAGGTCTTCTTATCATCGAATCGTTGAATTCAGAAGATGCCGGAACCTATAAATGCATCGCTAACAACACTGTTGGAACAAATGAAAGAAGCTTTGAATTATCTGTTTTCTGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   481795 176 -  1162296 ATTGTTG----------------------------------ATTTCAGGATGACGAAGTTCCAATTGCCCGTTCTGACAAACACAGTGTCGAGGAAGGTCTCCTTATCATTGAATCTCTCAACTCTGAAGATGCAGGAACTTACAAGTGCATTGCTAACAACACCGTTGGAACTAACGAGCGTAGCTTCGATTTGGCCGTTTTCTGTAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487124 169 - 33334924 -----------------------------------------TTTTCAGGACGGTGAGGTTCCAATTGCTCGTTCTGACAAACATAATGTAGACGAAGGTCTTCTCATTATTGAATCTCTCAATTCTGAAGATGCTGGAAGTTACAAATGCATTGCCAATAACACTGTCGGAAGCAATGAAAGAAGTTTTGATCTTGCTGTTTTCTGTAAG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      174154 194 +   258924 ----------------TTTTCTATCGATGCATCGATGCACAATTTCAGGACGAAGAAGTTCCCATTGCTCGTTCAGACAGGCACAATGTTGAAGAAGGTCTATTGATTATTGAATCCTTAAATTCTGAAGATGCTGGAAACTATAAGTGCATTGCAAACAACACAATAGGATCGAGTGAACAAAATTTcgacttgaaaattttttgtaag
i caeJap4.Scaffold54    I 176 I 526
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-6023.000000
s ce10.chrX               699675 42 + 17718866 TCTCTTAGTTTGAAAATGCAATTTAAATCAGTAAATTATGA------T
s cb4.chrX              21166257 37 - 21540570 CAAATCG-----AACACTGAATTAGTTCCAATGATTAGTTA------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   481971 38 -  1162296 CCAATCA--TCTAAAATTTCATTACATCTATGAA--AGTAA------T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487293 44 - 33334924 TT--TTC--TTggaaattttagtttttttttaaattagcTGCTATCTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      174348 526 +   258924 I

a score=68241.000000
s ce10.chrX               699717 149 + 17718866 TTCAGTGAAGCCAAAAGTTGATCTTAAACACGAGTACGTTGTCAAAGAGGGTGATGATGTTGAACTGGTATGCAGCTATCATGGAGAAGGACATGTTACCGCCAAATTTGTCTCTGGCCACAGCGAATTTGCAGTTAGA-AATGAAGCAG
s cb4.chrX              21166294 148 - 21540570 TT-AGTGAAGCCAAAAGTCGATTTGAAACACGATCATGTTGTCAAGGAAGGAGAAGATGTTGAACTTGTATGCAGCTATAATGGAGGTGGACATGTCACAGCTAAATTTACCTCTGGATCACGCGAATTCACGGTCAAG-AAGGACCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   482009 148 -  1162296 TTCAGTAAAACCAAAGGTTGACTTGAAACACGAGCATGTGGTCAAGGAGGGAGAAGACGTGGAACTTGTGTGTAGCTATCATGGAGAAGGACAAGTCACCGCCAAATTCACCACTGGATCACgcgaattttcagtgaaa-aaagtgCAT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487337 148 - 33334924 TCCAGTGAAACCAAAAGTCGAATTGAAATACGAATACGTTGCTAAGGAGGGTGAAGACGTTGAACTGGTCTGTGGATATCATGGTGAAGGACATGTAACAGCCAAATTTGTTTCCGGATCACGCGAATTTTccatgaga-aaagagaat-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      174874 149 +   258924 TTCAGTGAAACCAAAAGTGGAGCTTAAAAAAGAGCACGTTGTCAAGGAGAgtgagaaaattgaaatttcttgCAATTTCAATGACGAAGAAGACATCTCTGCCAAATTTGTCTATGGATCTCGCGAATTTACAGTAAGACAAGGAGAAA-
i caeJap4.Scaffold54    I 526 I 10
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-1853.000000
s ce10.chrX               699866 11 + 17718866 TGAGCGCAGGA
s cb4.chrX              21166442 11 - 21540570 CTGAAGAAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   482157  3 -  1162296 --------GCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487485  9 - 33334924 --gaacaCGTt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      175023 10 +   258924 I

a score=595.000000
s ce10.chrX               699877 195 + 17718866 AATTCCGAAGAAATTCGTCCAGAATCCAACGAGTCGGAAGAAGTGACTACTACCTCAGAAAAT------TCC---GAAGAAACCTCTACT---CAAGATGAAGTTGAGCTGAAATCAGCTGAGAATGTGAA---------C---------GATGAGGAAGACCATAC---TTCGCAAC-----------------AAGATGATGGAGAACAG---GACGAGCAAGAAGAATCCAAGAAGTGGAAACGA
s cb4.chrX              21166453 213 - 21540570 CATTctgaagaaattccaaaagaagaGACTGATTCCCAGGAA---ACTGGAACGAAAGAACCTTCTACTTCT---GAAGAAACGGCCACAACtgatgaagaaattgaaattaaatcTGCGGACTCCTCTGA---TAA---T---------GATGAGAATGAGGAAAC-------AACC--GCGTCTA-----ACAACGATGAGGATGATCACGCTGATGAGCAAGAAGAATCTAAGCGGTGGAAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   482160 222 -  1162296 AACTCCGAAGAAATTGAGATGGAGCAAA---ACTCTGAAGAA---TCCACAACCACTGTAAATTCTGCTTCTCAAGAGGAGACCGTCACTGCTAGTGATGAATTGGAACtgaaatctgctgaaaatgttga---taacTCT---------AATGAAGAGGACGAAAC---TTCTCATC--ATGACCATGGAGGCCAAGATGGAGAAGATAAA---GATGAAAAGGAAGAGTCGACGAAATGGAAGAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487494 216 - 33334924 aaatctgaagaaaacgaaagtgagcaaa---attctgaagaa---accACCACCGTTGGA---------TCA---GAAGAAACCACTTCA------GATGAAGTTGAATTGAAATCCCCAGAAAAGTCCGAAGGAAAAtctgaagagagagaggagaatgACGAAACCCCTTCTCATC--ATAACCATGGGGTTGAAGAT---CAAGATCAA---GAGGAGCAGGAAGAATcaaagaagtggaagaga
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      175033 196 +   258924 aattgaaaacaattttgtttaggtgaaa--------gaagaa---gaaaaaaaagaagaa---------------gaagaagaagaagaagctagTCACCAAACGGAA---AACCCGATTGATATCCCCGA---AGATGCA---------GATGCTGATACCGAAAA---TTCAGATTTagaaactacaactgaaacaat-agaaacagaga---cagaaacagaaacagaaacagagaccgaa----
i caeJap4.Scaffold54    I 10 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-17829.000000
s ce10.chrX               700072 171 + 17718866 -------GTAAGTGCTAAGTCGAAAAATTCGAAAAT-----TGAAAATATGACTGGAAATCTAGACTGGCAGAAG---TTCAG--GGTTAGCAAGTTCGGTAGATTTATTTTGGGTTTCGCGATACTTTATAGTGGGATAATTACTTGTTGAAATTAAGTGTCACACATTTTAAACTTCA--------ATTTGCAG
s cb4.chrX              21166666  45 - 21540570 -------GTgagt---------------------------------------------------------------------------------------tagatttttttt------------------------------------tgaaaggaa---------------aaccTATA------ATTTTTACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   482382  54 -  1162296 -------GTGAGTAC----------------------------AAAATATCC------------------------------------------------GGgatttttata------------------------------------ttcaaaata---------------aactgGTG--------TTTTTCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      175229 130 +   258924 gcaacaaaTGAGT---------------CTGGCAATAGTGACGAAAATAGTGATGAAAAACtcgaggaaaaaaagagattGAGAAGAGTAAGCAGTACactgtttccatttt------------------------------------ttaaaaata---------------aaaataaataaacaaaactttCAG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeSp111.Scaffold629   3487710   0 - 33334924 C

a score=171755.000000
s ce10.chrX               700243 446 + 17718866  
s cb4.chrX              21166711 451 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   482436 447 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3487710 443 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      175359 584 +   258924  
i caeJap4.Scaffold54    C 0 I 155
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=268562.000000
s ce10.chrX               700689  963 + 17718866  
s cb4.chrX              21167162  976 - 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   482883  990 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3488153  982 - 33334924  
i caeSp111.Scaffold629  C 0 I 5
s caeJap4.Scaffold54      176098 1090 +   258924  
i caeJap4.Scaffold54    I 155 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=1065.000000
s ce10.chrX               701652 5 + 17718866 TTGTT
s caeRem4.Crem_Contig24   483873 5 -  1162296 TAGTT
i caeRem4.Crem_Contig24 C 0 I 36
s caeSp111.Scaffold629   3489140 5 - 33334924 tcatc
i caeSp111.Scaffold629  I 5 C 0
s caeJap4.Scaffold54      177188 5 +   258924 TAGTT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e cb4.chrX              21168138 38 - 21540570 I

a score=819.000000
s ce10.chrX               701657 3 + 17718866 TTT
s caeSp111.Scaffold629   3489145 3 - 33334924 ttt
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      177193 3 +   258924 TTT
i caeJap4.Scaffold54    C 0 I 40
e caePb3.Scfld02_62         5396 15092 +   783054 I
e cb4.chrX              21168138 38 - 21540570 I
e caeRem4.Crem_Contig24   483878 36 -  1162296 I

a score=404.000000
s ce10.chrX               701660 18 + 17718866 TAAAGGATTCTGTAAAGA
s caeSp111.Scaffold629   3489148 18 - 33334924 tgaaataactTTTAAAAA
i caeSp111.Scaffold629  C 0 I 29
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177196 40 +   258924 I
e cb4.chrX              21168138 38 - 21540570 I
e caeRem4.Crem_Contig24   483878 36 -  1162296 I

a score=0.000000
s ce10.chrX               701678 548 + 17718866  
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177196  40 +   258924 I
e cb4.chrX              21168138  38 - 21540570 I
e caeSp111.Scaffold629   3489166  29 - 33334924 I
e caeRem4.Crem_Contig24   483878  36 -  1162296 I

a score=896.000000
s ce10.chrX               702226 12 + 17718866 TATTATGTTTTT
s caeSp111.Scaffold629   3489195 12 - 33334924 Tagtatgttttt
i caeSp111.Scaffold629  I 29 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177196 40 +   258924 I
e cb4.chrX              21168138 38 - 21540570 I
e caeRem4.Crem_Contig24   483878 36 -  1162296 I

a score=1623.000000
s ce10.chrX               702238 12 + 17718866 TTTTTCAGATTC
s cb4.chrX              21168176 12 - 21540570 ttttccagaatc
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   483914 12 -  1162296 TTATTCAGATTC
i caeRem4.Crem_Contig24 I 36 C 0
s caeSp111.Scaffold629   3489207  9 - 33334924 ---tttagtaAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177196 40 +   258924 I

a score=90054.000000
s ce10.chrX               702250 346 + 17718866 CCCAACAAAATACGAGGAAGGAATTGATTCTACTCACTTGATTATTGCAATTGCAATTGGAGTACTTTTCTTACTACTTCTAGTGGATCTAGGGTGCTTTATCACAAATAAATGTGGGCTTATTTCTTGCATATGTTTGAATCTTTGCGGAAAGAACGCTGGTGCTAAACAGAGAGATTTGGAGTCCGGAAGGTAGG----ATCTTAG---TTTAATGGCATCTAAA-AATTATAAATTTT--------TGCAGAGGAGGACCTGAAAGCAACAGATTGCTCGATTCAAGTGGAGCTAGGTAAA--ATGA-------GTAAAATG--------ATAGCTGACTGTGAAA----------------------TGTCAATTCGTGCGTTTTTTATT--TTATTTT
s cb4.chrX              21168188 355 - 21540570 tccgaCAAAATACGACGAAGGATTCGATACCACACATCTGACTATTGCCATAGCCATTGGTGTGTtggtccttcttcttctcattgaTCTCGGATGTTATATCACCAATAGATGTGGATTGATTTCGTGTATTTGTCTAAACTTATGTGGAAAGAGTTCTGGAGGAAAACAGAGTGATTTAGAATCTGGAAGGTAGAAGGAAAGATA----TCTGGAAAAGTCATTA-AGAT---TATTTT--------TGTAGAAGTGGACCAGAGAGCAATCGACTTTTGGATTCCAGTGGTGCTAGGTAAAATGTGTTTGTGAAGAAAAAA---------CTATATGAGT-TTTTG----------------------TGCAAGAATGTTCATTTTAATGTCCATTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   483926 345 -  1162296 CCCAACAAAATATGACGAAGGAATGGATTCTACTAAAGTTTTCATTGCTGCCGCTATTGGTGTTCTATTCTTGCTCGTTATTGTTGATTTTGGATGTTATGTCACAAATAGATGTGGTCTCATTTCATGTATCTGCTTGAATCTTTGCGGAAAAAATAATGGAGCCAAGCAAAGAGACTTGGAGTCCGGAAGGTTTGTCGAATTTTAA--CTCCGatgtaatttcaa-aaat---aacttt----------cagAGGCGGACCGGAAAGTAACAGACTACTCGATTCAAGTGGTGCTAGGTAAA--GTGATCGT---GAAACAT---------TCATACGTTTATTTTG----------------------TGTCAATCTGtgcgtttta------ttttttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3489216 337 - 33334924 TCCAACAAAATACGACGAAGGAATCGACTCTACTCACCTCGCCATTGCCATCTGTGTTGCTGTTgccttccttcttcttcttgtggATCTTGGATGCTATATCACCAACAGATGTGGTCTCATTTCTTGCATATGCTTGAATATTTGCGGAAAGAACTCGGGAGCCAAGCAAAGAGATTTGGAATCGGGAcggtaagaaaaaatt------tttgaaacagtattaATCAAG---CATTTA----------CAGGGGTGGACCGGAGAGTAACAGATTACTCGACTCTAGTGGTACTAGGTAAT--ATGattgt---gaaaaat--------------tggtt-gtTTT----------------------TGTCAATCTGtgcattttaa-----tttttct
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      177236 387 +   258924 CCCATTGAAATACTCTGAAAACGTTTATGAAGCTTGGTTCATTGCTGGAATCGTAATAGGAGCCATAGTTCTATTCTTCCTTATCGATTTGGCATGCTACCTCACAAACCGATGCGGAATTATTTCTTGTATTTGTCTTAACATTTGCGGAGAAAACCCTCGGGGTCATCAGAAAGATGTGGAATCAGgaaggtaaaaaaaataaagggcTTTTGAAgg----ttaa-taat---ttttttttgtaaattatagAGGTGGTCCTGAACGCAACCGACTTCTCGAATCGAGTGGGCCTAGGTAAA--TGGTTTG----GAAATAAACCTtggttttgtttcttt-ttttgctttatgGTGAGTAAAAGTGAATGTTGCTTTGTGTGttgtttatta-ttatttt
i caeJap4.Scaffold54    I 40 I 453
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=6065.000000
s ce10.chrX               702596 12 + 17718866 GGTGAGTGACGT
s cb4.chrX              21168543 12 - 21540570 GGTGAGTGAAGT
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24   484271 12 -  1162296 ggtgaGTGAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3489553 12 - 33334924 ggtGAGTGACGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177623 453 +   258924 I

a score=-1763.000000
s ce10.chrX               702608 29 + 17718866 GCATTTTTCGTATTTTTCGTCGGTTTTTT---
s caeRem4.Crem_Contig24   484283 22 -  1162296 ---GTTACAGTAAACTT----GGTGGTTT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3489565 26 - 33334924 -TCCGTCCGGTAAATTT-----Atgtttttcc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177623 453 +   258924 I
e cb4.chrX              21168555 20 - 21540570 I

a score=-5794.000000
s ce10.chrX               702637 44 + 17718866 TTGAATTTTGTTAAGATTTCGCTAGATGGAAATGTATTTTCAAG----
s cb4.chrX              21168575 41 - 21540570 TTGAATTACTGTGA---TTTGATTATAAAGTGTCTATATTTTAC----
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig24   484305 41 -  1162296 TTGA---ACTGTAA----TCGCCGATAACAAGACTGAACctaactcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3489591 22 - 33334924 ----------------------tcaaaaattgtttttattcaaa----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      177623 453 +   258924 I

a score=12948.000000
s ce10.chrX               702681 488 + 17718866  
s cb4.chrX              21168616 444 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   484346 502 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3489613 466 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      178076 396 +   258924  
i caeJap4.Scaffold54    I 453 I 129
e caePb3.Scfld02_62         5396 15092 +   783054 I

a score=-14949.000000
s ce10.chrX               703169 136 + 17718866 TGTTTGGATTACACCTTTAACTGCAATGAAAACAAATGAGAAGTTGAAATCAAAAACACATACACAACAA--------------AACACGTTTATGATAAAAATCAAACGTTAAAATGATAAT-----CAAAATTACATGCAAAAGTGGAAAAAA
s cb4.chrX              21169060 134 - 21540570 AATGTTAGTTATA-AGCTCGATAAATTT-------------------CACCAATAAT-TTTCCACACCAAATAGACTTAAGAAGTTCACATTTATGAAAAAGAGAGTACATAGAAgggttaattttttaaaaatcgcatgcaaaattgagaataa
i cb4.chrX              C 0 I 70
s caeRem4.Crem_Contig24   484848 132 -  1162296 tttttggattcaa-atgccattatgattgaaaaaaagaggaa---aacacCAATACT-TGCACATCACAA-------CAAAAAGTGGTCATttatagaaagaaaaaca-acagtAAGA----------AAAGATTACATGCGGAAatataaaaag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3490079  79 - 33334924 ATTG-----------GTTTCTTTCATTG-------------------AACCAAT--------------------------TAACTGTTTATTTGGAGAAACGATTTCTTATAAATGT-----------CAGGATTGCAATCCAgat---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      178472 129 +   258924 I

a score=-5909.000000
s ce10.chrX               703305 114 + 17718866 GGAACAAATATTTCCTTTTCTAGCTTCTAACACAGAAAATTTTTTAAAAAAGAAGCTAAAAAAA-CCCTGAAATGTGAACACTTTCAGAAAAATTTTGACCGTGCAAATAGAAAA
s caeRem4.Crem_Contig24   484980  28 -  1162296 --------------------------------------------tgaaa----------------caCCGA---------------acaata------------gaaatagaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3490158  79 - 33334924 -------------------ctagttttt-------tgagttatacgaaaa--aagcaataaaaaccactgacatacacaaa---gcacaacatgttta-----taaaataaagaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      178472 129 +   258924 I
e cb4.chrX              21169194  70 - 21540570 I

a score=-2583.000000
s ce10.chrX               703419 116 + 17718866 TTGATCAGTGCGTTACCAATTTTGGTCAGTGCATTACCAATTTTGGTCAGTGCATTACCAATGTTGGTCAGTGCATTACCAATTTTGGTCAGTGCATTTCCAATTTCGGTCAGTGC
s caeRem4.Crem_Contig24   485008  47 -  1162296 tta----------------------------------------tgg-------------AAAGCTGGTGAATGA-----------TAGTTGTGACATGCTCTAT----GATagtg-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      178472 129 +   258924 I
e cb4.chrX              21169194  70 - 21540570 I
e caeSp111.Scaffold629   3490237   0 - 33334924 C

a score=-10306.000000
s ce10.chrX               703535 223 + 17718866 ----------AAATTGAAAATCGGCCAGTGAATTACCAATTTTGGTCAGTGCATAGCTAATTTTGTTTAGTACAAATACAAACTTAGTCAGCGTTCAACCTAATTTAGTTAAAACCTGAAAATATTTTAGAAACGAAAAATCCGATGTTAATTAGTTGTTAATTAAAAAAGATTCTGCTGTAAAAGTATACCACAAGCGCTACAAGGAAATAATCAAAATTTAAAAAAAAACG
s caeRem4.Crem_Contig24   485055 125 -  1162296 ----------aaataagaaataaaatagTGAACCAACAACTCTG----GTGCAGGACTGAT----------------------------AGCA-TCAAATGAATCTGGAT-----TTGAATg--------ctacaaaaaat-caa---------------acttggAAAAG-TTTTACTGTA----TCTACC----------------------CAGTATTTAA---------
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   3490237 102 - 33334924 aaattgaaacggATGAGAAGT---GtagaaaacacaaaactgTGTCACATgcagaaat------------------------------------taaaataactTTAGA--------AAACGTATCTTCACTACA-------CAA---------------AGTTAGGaatg--------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      178472 129 +   258924 I
e cb4.chrX              21169194  70 - 21540570 I

a score=312.000000
s ce10.chrX               703758 4 + 17718866 AAAA
s cb4.chrX              21169264 4 - 21540570 AAAA
i cb4.chrX              I 70 C 0
s caeRem4.Crem_Contig24   485188 4 -  1162296 TACC
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold629   3490339 4 - 33334924 aaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62         5396 15092 +   783054 I
e caeJap4.Scaffold54      178472 129 +   258924 I

a score=-4793.000000
s ce10.chrX               703762 47 + 17718866 AGAAGTGAGAAGCTGTAAGAAGTATTGTGACATGCTCT--AATAAAATG
s cb4.chrX              21169268 43 - 21540570 GGAAAT------TATAAACAACTGTTGTAACATGCTTGACAATAGTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   485192 28 -  1162296 AGAAGT------TATAGAAAAGAGT---------------AACAGTGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3490343 32 - 33334924 ------------cattgagaaaaattattttgtga-----CATGCtcta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        20488 44 +   783054 AGAAGTGAAAGTCAGTGAGAATAAAGCATGCATAC-----AATGTTACa
i caePb3.Scfld02_62     I 15092 C 0
e caeJap4.Scaffold54      178472 129 +   258924 I

a score=96623.000000
s ce10.chrX               703809 434 + 17718866  
s cb4.chrX              21169311 448 - 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig24   485220 494 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold629   3490375 488 - 33334924  
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_62        20532 420 +   783054  
i caePb3.Scfld02_62     C 0 I 46
s caeJap4.Scaffold54      178601 661 +   258924  
i caeJap4.Scaffold54    I 129 C 0

a score=-5064.000000
s ce10.chrX               704243 11 + 17718866 GAG-TCTTCAAC--
s cb4.chrX              21169774 11 - 21540570 AAA-CGGTTTGC--
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig24   485739 12 -  1162296 aaatcattttct--
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold629   3490871 11 - 33334924 aaa-ttttttta--
i caeSp111.Scaffold629  I 8 C 0
s caeJap4.Scaffold54      179262 11 +   258924 ---GTGTCTActac
i caeJap4.Scaffold54    C 0 I 32
e caePb3.Scfld02_62        20952 46 +   783054 I

a score=-4181.000000
s ce10.chrX               704254 22 + 17718866 TCTGGTT---CTATAATATCTGGA---------------C
s cb4.chrX              21169785 37 - 21540570 ACTATCA---GCATAACTTTCGAAGGCTATTCATCATAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   485751 22 -  1162296 tctagAAAGCGCATAAA---CGAA---------------C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3490882 20 - 33334924 tctgCAA----TATGACTTCAGAA----------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        20952 46 +   783054 I
e caeJap4.Scaffold54      179273 32 +   258924 I

a score=-895.000000
s ce10.chrX               704276 8 + 17718866 GGCTCATT
s cb4.chrX              21169822 8 - 21540570 CAAACAAA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   485773 8 -  1162296 TGAACAAA
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   3490902 5 - 33334924 ---ACAAA
i caeSp111.Scaffold629  C 0 I 3
s caeJap4.Scaffold54      179305 8 +   258924 ggcTCTTT
i caeJap4.Scaffold54    I 32 I 10
e caePb3.Scfld02_62        20952 46 +   783054 I

a score=144743.000000
s ce10.chrX               704284 158 + 17718866 GCAAGCATTTCTCCATCAGCTTCAAGTTACCTGTGGTACCTGATT---GAGATCTATCGAGTCGCGAACCGGTGACATTTCATCATTATCAAGAAGATTGAGCTTATTGTCTGACGGTGGGTACATTTGGTACTCCGACTCGTTGAATATCCCTTCTGACT
s cb4.chrX              21169832 161 - 21540570 GCAAGTTTTTTCTCGGTAGCTTTGAGTTACCTGTGGTACCTGATTTGAAAGATCCATAGAATCACGAACTGGTGACATTTCATCGTTGTCGAGAAGGTTCAACTTGTTATCTGACGGCGGGTACATTTGATAATCCGACTCGTTGAATGTTCCTtcggtct
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   485789 161 -  1162296 GCAAGCTTCTTTCCAGCAGCTTTGAGTTACCTGTGGTACCTGGTTGGAGAGGTCCATTGAGTCACGGACAGGGGACATTTCATCATTGTCAAGAAGGTTGAGCTTGTTGTCTGATGGTGGGTACATTTGGTATTCCGACTCGTTGAATGTTCCCTCGGACT
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold629   3490910 161 - 33334924 GCAAGCACCTCTCCTGCAGCTTTGAGTTACCTGTGGTACCTGATTGGAAAGATCCATTGAGTCACGAACTGGAGACATCTCATCATTGTCGAGCAAATTTAGCTTGTTGTCTGATGGTGGATACATTTGATATTCAGATTCGTTGAAGGTTCCTTCAGACT
i caeSp111.Scaffold629  I 3 I 79
s caePb3.Scfld02_62        20998 160 +   783054 GAAAGCGTTTC-ACAACAGTTTTGAGTTACCTGTGGTACCTGATTTGAAAGATCCATCGAATCTCGTACAGGAGAAGACTCATCATTATCAAGCAGATTGAATTTCTTATCAGATAGCGGGTACATTTGATATTCAGACTCGTTGAATGTTCCTTCACTct
i caePb3.Scfld02_62     I 46 C 0
s caeJap4.Scaffold54      179323 158 +   258924 GCAAGCAATTT---GTCAGCTTTGAGTTACCTGTGGTACCTGATTAGAAAGATCCATAGAATCTCGTACAGGTGAAAGTTCATCATTATCCAGATAATTGATTTTCTTGTCTGACGGAGCATACATTTGATATTCGGATTCGTTGAAAATTCCTTCGGACT
i caeJap4.Scaffold54    I 10 C 0

a score=321.000000
s ce10.chrX               704442 5 + 17718866 GCAAA
s cb4.chrX              21169993 5 - 21540570 gaaaa
i cb4.chrX              C 0 I 187
s caeRem4.Crem_Contig24   485950 5 -  1162296 GAAAT
i caeRem4.Crem_Contig24 C 0 I 5
s caePb3.Scfld02_62        21158 5 +   783054 gtaat
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold54      179481 4 +   258924 GAAA-
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3491071 79 - 33334924 I

a score=-745.000000
s ce10.chrX               704447 15 + 17718866 ACAAGTTGAAAATAG---
s caeRem4.Crem_Contig24   485960 15 -  1162296 ACAAGTCTGACACTT---
i caeRem4.Crem_Contig24 I 5 C 0
s caePb3.Scfld02_62        21165 15 +   783054 aaaaatcgaacatag---
i caePb3.Scfld02_62     I 2 I 188
s caeJap4.Scaffold54      179485 18 +   258924 ATATGTACATCACGAtga
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21169998 187 - 21540570 I
e caeSp111.Scaffold629   3491071 79 - 33334924 I

a score=510.000000
s ce10.chrX               704462 15 + 17718866 GAACTGTGtatattt
s caeRem4.Crem_Contig24   485975 15 -  1162296 AAGCGAGTTTTCTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      179503 15 +   258924 aaattatgtattttt
i caeJap4.Scaffold54    C 0 I 168
e caePb3.Scfld02_62        21180 188 +   783054 I
e cb4.chrX              21169998 187 - 21540570 I
e caeSp111.Scaffold629   3491071 79 - 33334924 I

a score=-735.000000
s ce10.chrX               704477 98 + 17718866 atatttattt--atttttatCTACAAGTTTTATGAA----------TGCGCATTTATGCGGATTTCATGCCCCGGTTTGTTAGTTTCAATTTTATATGAAAAAGTTTAGC
s caeRem4.Crem_Contig24   485990 97 -  1162296 GTTTTCAGTGTAAgctttatttaaaaaatgagtgaaatgcCAACGTTGCTCAACCAAGAAAATT---TGCACCCAT------GACTGAATTCTAAATACGAATGTT----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I
e caeSp111.Scaffold629   3491071 79 - 33334924 I

a score=-2214.000000
s ce10.chrX               704575 49 + 17718866 AAAAAACATATACTTATACATAGTTGTTGGGCTCATTGAATACCCtatt--
s caeRem4.Crem_Contig24   486087 37 -  1162296 -------ATATATTTGTCA-----AGCTAATCTCATTAATCCTCCAACT--
i caeRem4.Crem_Contig24 C 0 I 91
s caeSp111.Scaffold629   3491150 41 - 33334924 ----aaaaaatttttgtt------tttgaattgttttgattttttaaatat
i caeSp111.Scaffold629  I 79 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I

a score=-948.000000
s ce10.chrX               704624 106 + 17718866 aaactaaaaaaaaagttttaaaaaatattttaGTTGCCCGGTTAAGAAGATCACAAATGTTGAGAAATTCTTTATA-------AGTTTCCGGACATTTACTCTATCGCAGACC
s caeSp111.Scaffold629   3491191  81 - 33334924 aaacta-----------ttcaattatgctttacttttt------------tCGTATATCTTG--------TTTATCCAAATCTGATTTGTGGTTGTTTTTTGCA-CAcagtct
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I
e caeRem4.Crem_Contig24   486124  91 -  1162296 I

a score=-15415.000000
s ce10.chrX               704730 232 + 17718866 CTTATTTGTCATACTTGC-----------------GACCCCTAAATAAAATCAACTTGGTAGTT--TTAAGCAG-CACACTTTTTGTGTATACAACC--CAAAAAAA--------------CACAA-----------------ACAAACAT-----TGTTTTTTGGTCTGTGCtaataa-ttatttatta----------------------------aaaaaaactat--atttCTGG-------TCATTTTACGATCATGCTTTATGaaaaa---taataattaaa----attttCTA---------------GTTCAG----TTTTTTTAGATCTGAGAATTTGGCCTAAC------------------
s caeRem4.Crem_Contig24   486215 336 -  1162296 gttatctgttatatatacagatatacctaatgttatgttCTTAAAGTTAACTGCAACAGTAGTTCATTAGAAAA--GTGCGTTGTCTGCATGaagtctgcaaaaaaatgttaCCTCACAACCCAAATTTAGAAACTGAAAGCTACAAAAGAAGCgttacttttctttttgt----ataatttgtttatcacgtcaacattttcttgtttttgttttccaacaaaaGCGTTGGATTCCAA-------TAAAGTCTCCAATATAG-ATTTGAATGAATCTACAAATAACAGC--AGCTTC-----------------GTCAGtattattttctcaa---ttacaatttttgcaatttctgcAATTCAGAGAAAC
i caeRem4.Crem_Contig24 I 91 I 348
s caeSp111.Scaffold629   3491272 243 - 33334924 ---------------------------tttttttagattccTACAATTAGTTACTCAAATAGGTGGTTAGGACGTCTcactttgttttcattcagttttctgaaaag--------------ccAAG--TGAAAGCTGCATGTGACGAAAGA-----CACCTCTC-----------AGAA---------------------------------------AACTGAAGGATTAGGTTTAGCTGTGGCTTAACTTCTCAACTTTCTCACTTGCATCA---TACAAACGTAAGCAAAGCTTCTCTCAATGGTGGGAAAAGTTCAGAGTATTTTCTTAG---TGCGAATTTA-------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I

a score=166.000000
s ce10.chrX               704962 204 + 17718866 TGGTTTTGAAAAAATAACTGAATTTAATTTTTTCAG------GCTGTACCAAAAAGTTATTAAATATAGGTTTCTGGttt--aaaactattttatttttttatataaCCCAGTATATCAACTTGGAATACATATAGAATATTTTTCCCCAAAAAAAGACAAAAATTAAGAAATTTAGTAACAAAGGAACTACG------ATGAAATAATGA-AGAAACA
s caeSp111.Scaffold629   3491515 153 - 33334924 ------TGAAAAGTttact---tttgattttttcaagaatttgaAGTTCCATTAAGCTG------------TTccgttttaaaaaactatttt---------------ccagaag---aacTTG--------ATAAGATACGTT-------------------GTCATTAAATTTAATAATCCAAAAACCACTCGTCACATTAAATTTTGACATAAACA
i caeSp111.Scaffold629  C 0 I 90
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I
e caeRem4.Crem_Contig24   486551 348 -  1162296 I

a score=0.000000
s ce10.chrX               705166 81 + 17718866 GATTATGGTTGTCTTAGCCTATACATACTTTTCGATCAACAACGGAGCATAATCTTTTGAACACTATTCAACTGATAATAG
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I
e caeSp111.Scaffold629   3491668 90 - 33334924 I
e caeRem4.Crem_Contig24   486551 348 -  1162296 I

a score=775.000000
s ce10.chrX               705247 19 + 17718866 TCATGCGAAAGATACCTAG
s caeSp111.Scaffold629   3491758 19 - 33334924 taatacaaaaactaccttg
i caeSp111.Scaffold629  I 90 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I
e caeRem4.Crem_Contig24   486551 348 -  1162296 I

a score=-1827.000000
s ce10.chrX               705266 13 + 17718866 AAACTTTTAGAGA---------
s caeRem4.Crem_Contig24   486899 13 -  1162296 ---------AAAACCATATATG
i caeRem4.Crem_Contig24 I 348 C 0
s caeSp111.Scaffold629   3491777 12 - 33334924 -gttttttgaaca---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I
e cb4.chrX              21169998 187 - 21540570 I

a score=-1683.000000
s ce10.chrX               705279  7 + 17718866 TTAGCCC------
s cb4.chrX              21170185  7 - 21540570 TTAGATA------
i cb4.chrX              I 187 C 0
s caeRem4.Crem_Contig24   486912  7 -  1162296 TTATGTT------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3491789 13 - 33334924 tccGATATAACAT
i caeSp111.Scaffold629  C 0 I 2
e caePb3.Scfld02_62        21180 188 +   783054 I
e caeJap4.Scaffold54      179518 168 +   258924 I

a score=120107.000000
s ce10.chrX               705286 166 + 17718866 AACTCACCCTAAGCCTTTCAATTTCCGCTGCTGAGCATGTCGGGGTATTTACAGAGTACACGTTGTGAAATTTGCCAAAGTCAATGTTATACTGGCCATTTTCCTTCTTGTAGTGCACCAGTTTTTCAAACCTAAAAA----ATGTTGTTTTTTTATT-TGGAATAGTAGG
s cb4.chrX              21170192 138 - 21540570 GACTCACTCTTAAACGTTCAATTTCCGCGGCTGAGCAAGTTGGCGTGTTGATTGAGTACACATTATGGAATTTCCCAAAATCAATGTTGTATTgtccgttttcttttttgtaatgCACCAGTTTTTCGAACCTGAAAT---------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   486919 135 -  1162296 AACTCACTCTTAGTCGTTCAATTTCCGCTGCGGAGCAAGTAGGTGTGTTCACGGAGTACACATTGTGAAATTTGCCAAAGTCGATATTGTACTGtccgttctcttttttgtaatGCACCAGTttttcgaatctga------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3491804 138 - 33334924 GACTTACCCTAAGCCTTTCAATTTCCGCTGCAGAGCAAGTCGGCGTGTTTACCGAATATACATTATGGAATTTGCCAAAATCAATGTTGTATTGtccgttctcttttttgtagtgaaccaatttttcgaacctgaaaa---------------------------------
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_62        21368 138 +   783054 AACTTACTCTGAGTCTTTCAATTTCTGCCGCCGAGCAGGTTGGTGTGTTCACAGAATACACGTTGTGAAATTTGCCAAAGTCGATGTTATATTGaccattttctttcttgtagtggaccaatttttcaaacctgaACA---------------------------------
i caePb3.Scfld02_62     I 188 C 0
s caeJap4.Scaffold54      179686 171 +   258924 aacaaaccCTTAATCGTTCGATTTCCGCAGCCGAACACGTTGGAGTATTCACCGAGTAAACGTtgtgaaattttccaaaatcaaTATTATATTGCCCGTTTTCTTTCTTGTAATGAACCAACTTTTCAAATCTGCaaattcaatgtgatattTTAATTCCAAAATAATAAG
i caeJap4.Scaffold54    I 168 I 2

a score=-39595.000000
s ce10.chrX               705452 256 + 17718866 TAGCATAGAAACATATTTTAAAATTTTTGCTTACCCACTCAATTTTTACAAATATAATATTAGAATCAGTGAAAATTTGCGTTGTCGAATATCATATTAAAAGACATTTAAAAACTC---------AGATTTTCGATATATTTTCAGTCAATGTTTAAGAAC--AAAATTCTAGACAACATATACTTTCAATTATACTGGAAAAAATACCTAGGCTCTCGTGATAACATCAACTACTTCCTCAAATTTAAAGTTTT-AAGCCATCATC
s cb4.chrX              21170330 123 - 21540570 -------------------------------------------------------------------------AATATATATTACCGATTTGCA-ATTACAG-AC---TATTACgtttgtgtgagaaaaacttttggttactgtt----tgtgtttttgaat--atat-------------------------atgtttgtttttgtg-----------------------------------aatattttgttgt-gtgtttttATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   487054 112 -  1162296 -------------------------------------------------------------------------aattcaaattctagatttttc-accaaaacaC---TGAAGAGTT---------GAATATTTTGTTCTCTTCTAACGCATgctaaaaaac--agaa-------------------------aaactagt------------------------------------------ATTACTATGTTTT-GTTCTTTTATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3491942  82 - 33334924 -------------------------------------------------------------------------acaattggtT------------ATTTGAATAC---ATTCGTCCG---------TGACGCTT--TATATT------ATATTGTAAAAAAC---------------------------------------------------------------------------------ATGTTTATGTTTTCTagcattcatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        21506 142 +   783054 ------------------------------------------------------------------------TAGAATTTGTGATAgattaaaa-attggaaaac---gaaaatttt---------caatgtttcctgtattttcaagaaattataaaaaaccGATAA-------------------------GTATTGGATAATTTCACTGAAATCT-------ACATCAAAT---------ACCTTCAAATTGTTGAATGAGcatc
i caePb3.Scfld02_62     C 0 I 81
e caeJap4.Scaffold54      179857   2 +   258924 I

a score=-13496.000000
s ce10.chrX               705708 87 + 17718866 TTGGTGACGTCCAAGTTCAAAGGTTTTCTCGAACAGCAATATGTTGTTGTTATGCTACTACATGCACATCTCTCCCACCACCACATT
s cb4.chrX              21170453 37 - 21540570 -----------------CAAATGAAATCTCGCA---------ACTCTTG----------------ACAG-----CCATCactat---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   487166 50 -  1162296 -------------------GATAACATATTACA---------TTTATTGTCACTTTTCGAATTGTCCAT-----CCAccatt-t---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3492024  2 - 33334924 ----------------------------------------------tt---------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        21648 81 +   783054 I
e caeJap4.Scaffold54      179857  2 +   258924 I

a score=-25722.000000
s ce10.chrX               705795 206 + 17718866 TATTTTGAGAA-----CCTTC--TCCGGTCGCA----AGCCGCGTCTTATCCTCGTGTGACGTA--TGAAACTGCCGAAATCTGCCTCCC-----------CTTCT-----CCCCTCCTTCATTCTTTCCT-----------------CATGCTCTGTTCCAAGGAGCAGTCAAAACGTTTT-------CTCACAATTATTTTTGGATTTC-----TCCATTTTTTCTTTTGA--GTATTACCAGTAT----GAATGTACATTTGAATTT
s cb4.chrX              21170490 210 - 21540570 tattttgaaaa-----cctcC--TCGCCTCTTC-----ACGAAA-ATTATCCTAGTGTGACGTCTTCAAAACAAGCCAAATCCGGCTTTCAAA---ggctcctttt-----ttttctctcgcaTATTTTTG----------------GCA-GCTT------------CAACTTGTGAACCTCGAGCACACCTTCAAGTGTTCGCTAGctcg-----cttttttttgaatttgggtaT-TTATCAAATT----AGGGGCAGCGATAAGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   487216 229 -  1162296 tattttgagaa-----cCTTCGATTTCATATCG-----ACTAAGTCTTATCCGTGTGTGACGTA-CAAAAACCCACCAAATCGGCCTCTCAGCTCTGACACCTTCTCCCGATTCTTCCTCgcttatttttatatttgctATATGTTCTCA-GC--------------CGGCGCATAAATCCCGAACATACCCatcatttt------attca-----ttctttttcaattttta--at-ttcttaaCATGCCCAAGTGTaaaaaaaaCG-C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3492026 121 - 33334924 tattttgggaACTCATCCTCC---CTCGTCTTT----------TCTCTATCC----------------------------TGGGTCT----------------TAT-----CCATGCCTGACGTACATGAG-----------------TA-GCTT-------------AATCGGTGTCTCCT------------------------ATTCTCAtagtcttttttcaattttga--tt-tca-----------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        21729 158 +   783054 tattttgagaa-----ccTCC---CCCATTTCTATCAGAATAAGCTTTATCCGTGTATGACGTA---AAAAGAGGATGAATTGGTCTTTC-------------TTT-----CTCgttcttattcattttca-----------------ta-gcttt-----------caattcacgaatgcc------------------------attct-----tttctttttacttttct--tt-tcatcaaact----------------------
i caePb3.Scfld02_62     I 81 C 0
e caeJap4.Scaffold54      179857   2 +   258924 I

a score=88485.000000
s ce10.chrX               706001 97 + 17718866 TACCTGTGCCCCCATAATATTTCCGACGGAAGGTAGCTTGTCCGTGCTTGGGTAGTTGAACCGACGCTTTCCACCACTCCTTCCAAAATTGCTGAAA
s cb4.chrX              21170700 97 - 21540570 TACCTGTGTCCCCAGAGGATTTCCGAAGGAAGATAACTAGTTCTGGCTTGTGTCGTAGAGCCCACACTTTCAACAACACCTTCCAGAATAGCTGAAA
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig24   487445 92 -  1162296 TACCTGTGTCCCCATAGAATTTCCGATGGTAGATAACTGGTTCTTGCTTGTGTGGTAGACCCAACACTTTCAACGACACCTTCCAGAATGGC-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3492147 97 - 33334924 tacCTGTGTCCCCAAAGAATTTCCGATGGAAGATAACTGGTACGAGCTTGAGTTGTAGATCCTACACTTTCAACGACACCTTCCAGAATAgctgaaa
i caeSp111.Scaffold629  C 0 I 37
s caePb3.Scfld02_62        21887 97 +   783054 tACCGATGTCCCCATAGAATTTCTGATGGAAGATAACTTGTTCTAGCTTGAGTAGTTGATCCCACGCTTTCAACGACTCCTTCCAGAATTGCTGCAA
i caePb3.Scfld02_62     C 0 I 104
s caeJap4.Scaffold54      179859 97 +   258924 TACCTTTGCCCccataaaatttcagatggcAGATAACTGGTTCTCGCTTGTGTTGTTGATCCAACACTTTCCACTACTCCTTCGAGAATTGCTGAaa
i caeJap4.Scaffold54    I 2 C 0

a score=109.000000
s ce10.chrX               706098 27 + 17718866 ATTTGAAAACATTTGGATTTTCTATTT
s caeJap4.Scaffold54      179956 18 +   258924 gttggaaaa---------ttttttttg
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        21984 104 +   783054 I
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I
e caeRem4.Crem_Contig24   487537  0 -  1162296 C

a score=-5097.000000
s ce10.chrX               706125 70 + 17718866 ATCAGCTTTTGAAACGCCAAATATGTTTTTTTATAA-AAGCAGA---ACAATGTCTGT-AAAATTGAAATTATTG-
s caeRem4.Crem_Contig24   487537 11 -  1162296 ----------------------------------------------------------------TGTAATTATTG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      179974 51 +   258924 -------------------------atctgCGATAAGaagcggagacgcagagtgcgcggAAATTGTGGTTTTTTG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        21984 104 +   783054 I
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I

a score=-895.000000
s ce10.chrX               706195 107 + 17718866 GTAACAAAAAAAGAGTAGAACTAGATCGGAAAAAAATCTCAGACAGGACACGATGTGCGCATCAAAAAAACCGACATTTGCCTATTTGAGGTTCCTGTTGGCAAATT
s caeJap4.Scaffold54      180025  66 +   258924 GCGACT--------------CTCccccgaagaga---cgcagacaagcagc------ctccccaCAAAA--CGACaattagccat----------------caaatt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        21984 104 +   783054 I
e cb4.chrX              21170797  35 - 21540570 I
e caeSp111.Scaffold629   3492244  37 - 33334924 I
e caeRem4.Crem_Contig24   487548   0 -  1162296 C

a score=-1259.000000
s ce10.chrX               706302 23 + 17718866 ACATAGCTAATTAATATTGTTTA
s caeRem4.Crem_Contig24   487548 23 -  1162296 ACTTAGACGATCGATAATTTTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      180091  2 +   258924 -----------cg----------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        21984 104 +   783054 I
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I

a score=-5156.000000
s ce10.chrX               706325 37 + 17718866 GAACTTACTAAAAACTATGTCAATCTAAACAGTTTTT
s caeRem4.Crem_Contig24   487571  7 -  1162296 ---TGCCTCA---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        22088 24 +   783054 gaacttttcaaaaat-------------acggTTATT
i caePb3.Scfld02_62     I 104 I 22
s caeJap4.Scaffold54      180093  9 +   258924 gcgcgtatt----------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I

a score=-385.000000
s ce10.chrX               706362 33 + 17718866 TTGATTTTAAACTTTTTTTCTGGAAAATTTTTT
s caeJap4.Scaffold54      180102  5 +   258924 ----------------------------ttttt
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        22112 22 +   783054 I
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I
e caeRem4.Crem_Contig24   487578  0 -  1162296 C

a score=-2634.000000
s ce10.chrX               706395 37 + 17718866 TATTACTAACAAGCACTTGAAACTTTTCAAAATGATG
s caeRem4.Crem_Contig24   487578  6 -  1162296 ---TAccaa----------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        22134 37 +   783054 CACTATTAAGTAGTACATGAGTGCCTCCAAAATGATG
i caePb3.Scfld02_62     I 22 I 5
s caeJap4.Scaffold54      180107 21 +   258924 tatttct----------------ttatcATATTTATG
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I

a score=-1254.000000
s ce10.chrX               706432 18 + 17718866 TTTTTATTTCGATTTCGG
s caeRem4.Crem_Contig24   487584  6 -  1162296 ---ttattt---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      180128 18 +   258924 CTCAGAGTTCAAGTgaaa
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        22171  5 +   783054 I
e cb4.chrX              21170797 35 - 21540570 I
e caeSp111.Scaffold629   3492244 37 - 33334924 I

a score=207.000000
s ce10.chrX               706450 1 + 17718866 C
s cb4.chrX              21170832 1 - 21540570 c
i cb4.chrX              I 35 C 0
s caePb3.Scfld02_62        22176 1 +   783054 C
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold54      180146 1 +   258924 t
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3492244 37 - 33334924 I
e caeRem4.Crem_Contig24   487590 0 -  1162296 C

a score=130018.000000
s ce10.chrX               706451 312 + 17718866  
s cb4.chrX              21170833 349 - 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   487590 327 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3492281 335 - 33334924  
i caeSp111.Scaffold629  I 37 I 299
s caePb3.Scfld02_62        22177 495 +   783054  
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold54      180147 284 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=-66527.000000
s ce10.chrX               706763 159 + 17718866 CGAAAATCA-----TCTGAT--------------------------------AACAATTTTCAGACA----------------TAATAGCTACATTTGCATAGCTATGGAGCTTCCC--------------------CAAA---------------------TCGAATATTTGAACCCTTTAAGTCTAGAT-------CAGATTGCAATTCGCAAAAGCTCTTTTTCCACTCAATCCACAAGCACTCAAGCACACAGTGA
s cb4.chrX              21171187 214 - 21540570 CGAAAATTA-----TCATTTCCG-TTGCATGATTTTTGTTACTTCTCATTTGCTATATTTTCATATAGAt-------------gtatctcaaaattttaacagATATGGATATTTCC--------------------CAAGATTCGAATTCTCTTCCTCAAGTGGAGCAACTGAGACCAGTCACTTTGGAT--CCATCCAGATTATCAGTTT-----GCTCGGTTTCTACTCAGTCAACGTCTCTTATTTCCAACAGTGA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24   487920 189 -  1162296 ---aaatcagtcGTTCATTCCAGACTTCA--GTCTCTGACACTTTTCA-----------TTCATA--------------------AACTCAGTATTT--ACAGGAATGGA---TCCA--------------------CAGAACATG---TCTCCTTCTCGGATAGCACAGCTAAGTCCCCTGACGCTTGATTCTCTTCCTGTACATAAGTTG-------TCATTCTCTACTCAATCATCAAGTACAAATGTTCATAGTGA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3492915 136 - 33334924 cgaaacttG-----TTTGTT----TTGCAG----------------CAATGGAACAACTCCAACCTAATT------------------------------C------------TCCG-----------------AGACAAA---------------------TTGAGCTCCTCAGCCCTTTGACACTTGAG--------ACATCTTACATGG-----GCTCTTTCTCAACACAATC------TACGAGTGTGCACAGTGA
i caeSp111.Scaffold629  I 299 I 82
s caePb3.Scfld02_62        22673 214 +   783054 agaaaaatg-----gaGTTT----CTGCGGATTCTTAGCTACT--TTGTTGTGTCAATTCTCAACTAGTTAGTGCCTAAAT-TGAATCTTGCTTATTCAAC------------TCTTGATTTGCAGATATGGACAGTCAAGATCTG---TCTTCACGTCACATAGAACTGCTGAGCCCGCTCACTCTTAGC--------AGCTCACAAGCGG-----GATCTTTCACCACACAATC------TACAAGTGTTGACAGTCA
i caePb3.Scfld02_62     I 1 I 12
s caeJap4.Scaffold54      180431 145 +   258924 --------------------------------------------------------------------------CAGAAATACAAATAGAGGAAATTTTGCaactaatagccattga--------------------aaaggCAAACAGCCATCGAATCGGGTCGAAAAAT---GCTAGTAGATATCGGAT------TCGGAATGCATTTGG--------CACTTGCCCAagattcaatggctatta--gccaacaaT--
i caeJap4.Scaffold54    C 0 C 0

a score=-21487.000000
s ce10.chrX               706922 62 + 17718866 AACGGAACTTCACCCTTCCG-AAGAGCCTCAAAAGTTCG------TTTGCTC-----CATGGTACTTT----------------------------------------TTTATA
s cb4.chrX              21171401 50 - 21540570 ----AATACCCAGCCCAAATGGTTCGAATGAAAAGTGAG------TT--------------ACGCTTT----------------------------------------TTTATG
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig24   488109 33 -  1162296 ----AACA-------------GAGCTAGTGAAGAGTCCA------AT--------------GGA--------------------------------------------TTCAAA
i caeRem4.Crem_Contig24 C 0 I 397
s caePb3.Scfld02_62        22899 99 +   783054 GTTTGAAATCCATCCAGAAG-AAAATAGTCAGAGGTGAGCACAGTTT--------------ATGTTTTCCAAGTAAACAACAAACATCTTGTAATAACGTTTGCAGATTTCATA
i caePb3.Scfld02_62     I 12 I 117
s caeJap4.Scaffold54      180576 44 +   258924 ---------------------TTTCTGAGAACAAGCTCT------TTTTATCACACTCATGTtgtctt----------------------------------------ttc---
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3493051 82 - 33334924 I

a score=0.000000
s ce10.chrX               706984 9 + 17718866 ACTATTAAC
e caePb3.Scfld02_62        22998 117 +   783054 I
e caeJap4.Scaffold54      180620 0 +   258924 C
e cb4.chrX              21171451 56 - 21540570 I
e caeSp111.Scaffold629   3493051 82 - 33334924 I
e caeRem4.Crem_Contig24   488142 397 -  1162296 I

a score=15104.000000
s ce10.chrX               706993 25 + 17718866 TTCAGGAAAAGGCGGACTGTTACAT
s cb4.chrX              21171507 25 - 21540570 ttcagaaaaaagcgAACAGTCACTT
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig24   488539 25 -  1162296 ttcaggaaaaaaagaacagtgACAT
i caeRem4.Crem_Contig24 I 397 C 0
s caeSp111.Scaffold629   3493133 25 - 33334924 ttcagaaaaaagcggACGGTCACGT
i caeSp111.Scaffold629  I 82 C 0
s caePb3.Scfld02_62        23115 25 +   783054 TACAGGAAAAAGCGTACTGTTACGT
i caePb3.Scfld02_62     I 117 C 0
s caeJap4.Scaffold54      180620 16 +   258924 ---------aatcgagttgcgacat
i caeJap4.Scaffold54    C 0 I 53

a score=31767.000000
s ce10.chrX               707018 65 + 17718866 TCGGTAACATTGACATCACCGAGCTTAACTATCAGGCAACAAAAATTCCACCGGAGCAGAGGAGG
s cb4.chrX              21171532 65 - 21540570 TTGCCGAAATTGATATATCCGAGTTGGATTATCACGCAACaaaaataccagccgataaaaaaaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   488564 65 -  1162296 TCGGTGAAATTGACATCACTGAACTAAACTATCACGCCACGAAGACTCCTCCAGAGGAGAAAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3493158 65 - 33334924 TTGGCGAAATTGATATTTCGGAGCTGGACTATCAGGCAACGAAAACACCGCcagaggagaaaaga
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        23140 65 +   783054 TTGCTGAAATTGATGTATCGGAACTGGACTATCATGCAACTAAAATACcgatggaagagaagaga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      180636 53 +   258924 I

a score=13046.000000
s ce10.chrX               707083 44 + 17718866 CAGTGGAAGCGGCAAGCAATTCGGAGAAGAATTGAGAAAAGTGA
s cb4.chrX              21171597 44 - 21540570 gagtggaaaaaacaggcgattaggagaaaactagaaaaaagtga
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   488629 44 -  1162296 CGTTGGAAGCGGCAAGCTAtacgaagaaaaattgaagcgaGTGA
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold629   3493223 44 - 33334924 aaatgggaaaagcAAGCTAGACGGAGGAAGATTGAACGAAGTAA
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_62        23205 44 +   783054 aggtgGAAAACACAAGCaattgagaggaaaaaagcaaaaagtaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      180689 30 +   258924 TAATTGAAGCGAC--GCAGACCAAAAAGGGAT------------
i caeJap4.Scaffold54    I 53 C 0

a score=0.000000
s ce10.chrX               707127 2 + 17718866 GT
e caePb3.Scfld02_62        23249 0 +   783054 C
e caeJap4.Scaffold54      180719 0 +   258924 C
e cb4.chrX              21171641 2 - 21540570 I
e caeSp111.Scaffold629   3493267 1 - 33334924 I
e caeRem4.Crem_Contig24   488673 2 -  1162296 I

a score=-8228.000000
s ce10.chrX               707129 84 + 17718866 TGCAGATTTAATTTTTTTTTTGGATTTATCGAATTCTCAAATTCGGGCGCTTTTT---TCACGATTAAATGTTTTTGTGATTGCAAA
s cb4.chrX              21171643 22 - 21540570 ----------------------------------------ttgAGGAAGTTTCTT---CTGCAAA----------------------
i cb4.chrX              I 2 I 10
s caeSp111.Scaffold629   3493268 26 - 33334924 --------------------------------------AGTTTAACACAATTTTC---TTACAATTA--------------------
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold54      180719 26 +   258924 ---------------------------------------ATCAggctcatttttcatgctgcaac----------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        23249  0 +   783054 C
e caeRem4.Crem_Contig24   488673  2 -  1162296 I

a score=-407.000000
s ce10.chrX               707213 24 + 17718866 TCTGCATATTTGTAAATCCTAGGT
s caeJap4.Scaffold54      180745 14 +   258924 -----tcgtttgaaaacac-----
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        23249  0 +   783054 C
e cb4.chrX              21171665 10 - 21540570 I
e caeSp111.Scaffold629   3493294  0 - 33334924 C
e caeRem4.Crem_Contig24   488673  2 -  1162296 I

a score=-10420.000000
s ce10.chrX               707237 83 + 17718866 AAAAAGGAAAAAAATTTTCATATTTGCCACAGTTCCCTGACAAAAAGGTTAAGTGCACTGACCGAAGCAAAATCTA---TTGTTTC
s caeSp111.Scaffold629   3493294  8 - 33334924 ---------------TTCAATGG---------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        23249 37 +   783054 aaaaaaaaaacgatttttcatgG-----------------------GGCTAA---------------------Cca---ctgtt--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      180759 53 +   258924 --------aataattttcgaatt-------------------------ttaacCACACCTTTTTAAGAAGTGCTTGAATTTGTTTC
i caeJap4.Scaffold54    C 0 I 41
e cb4.chrX              21171665 10 - 21540570 I
e caeRem4.Crem_Contig24   488673  2 -  1162296 I

a score=0.000000
s ce10.chrX               707320 3 + 17718866 TTT
e caePb3.Scfld02_62        23286 0 +   783054 C
e caeJap4.Scaffold54      180812 41 +   258924 I
e cb4.chrX              21171665 10 - 21540570 I
e caeSp111.Scaffold629   3493302 0 - 33334924 C
e caeRem4.Crem_Contig24   488673 2 -  1162296 I

a score=0.000000
s ce10.chrX               707323 43 + 17718866 GAAAGTTTTGTATCTACTTAAAAAACAGTTTTATCCTATTTGA
e caePb3.Scfld02_62        23286  0 +   783054 C
e caeJap4.Scaffold54      180812 41 +   258924 I
e cb4.chrX              21171665 10 - 21540570 I
e caeSp111.Scaffold629   3493302  0 - 33334924 C
e caeRem4.Crem_Contig24   488673  2 -  1162296 I

a score=83.000000
s ce10.chrX               707366 8 + 17718866 TTTCACTT
s caeRem4.Crem_Contig24   488675 8 -  1162296 TTTCCTGC
i caeRem4.Crem_Contig24 I 2 C 0
e caePb3.Scfld02_62        23286 0 +   783054 C
e caeJap4.Scaffold54      180812 41 +   258924 I
e cb4.chrX              21171665 10 - 21540570 I
e caeSp111.Scaffold629   3493302 0 - 33334924 C

a score=10676.000000
s ce10.chrX               707374 118 + 17718866 AAAAAAAACAACTTTTATCAACAAATATA--ATTTTCAGGAGAGTTCTACCGTCGCATAAAAATG--GGATTCCTCAAAGGATGCATCATATTCCTTTTATTCACTTTATGCTCCCTGATAG
s cb4.chrX              21171675  89 - 21540570 -------------------------------GCTTTCAGAAGAGTATAACCGTCGGCTAAAAATG--GTTATTCTAAAAGGATGCatagttttcatatttttcgcACTCTGCTCTCTCATAG
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24   488683 118 -  1162296 TTAAAATCAATCGCCAGTAATTAAAATTA--CTTTTCAGAAGAATACCGCAGACGACTGCAAATG--GGTATACTCAAAGGATGCATCatattcctcttcttcatgCTATGTTCTATAATAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3493302  86 - 33334924 ----------------------------------TTCAGGAGAATTTCGCCggagaatgaaaatg--ggCCTTATCAAAGggtcaattgtttttctctttgtaaTGCTATGCTCTATTATTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        23286  88 +   783054 --------------------------------ttttcagagaactggcagagaagaatgaaaaag--agactTCTAAAAGGATCtatcatctctctttttttaattttgtgcTCGTTAGTTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      180853  81 +   258924 -------------------acgaaatagaaccgtttcatgatagaactgctacggga-GAAAACGCTGGCGCAGTAAAATGAAAGAGCACA---------------------TCGCTGGTGG
i caeJap4.Scaffold54    I 41 I 14

a score=6533.000000
s ce10.chrX               707492 17 + 17718866 TTCTTCTAGCGACCGCT
s cb4.chrX              21171764 17 - 21540570 TACTTCTTGCAACTGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   488801 17 -  1162296 TCCTTTTTGCTACTGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3493388 17 - 33334924 TACTTCTTGCCACCGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        23374 17 +   783054 GTATTCTCGCAGTTGCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      180934 14 +   258924 I

a score=95760.000000
s ce10.chrX               707509 293 + 17718866 CAAGGAACTGGTACAAAGCTCAATA-------------------TTTAGTTTATTTAACTATTATAA------------------------TGCCTACA--------CATCAA----------AACAAGTACCTGCAACCGAACATGCGCTTCCGCCAAACTTGACTTTCTCATGTCACCAACTCGAAATAACAGACACAGTTTCCCATCTCGCAGACATATTACCTGTGATTTAAT-AAATTATTT-------GTC---------------AATTT-TCTAATTCGATTGA-------ATTACCGCATTTTTGGAGAATATCAGAGTTGCTGCACGTTTGATGGGTCTTGCCAGCTTGGAGAAGATA----------ATACCAGCCATTAAAGT
s cb4.chrX              21171781 332 - 21540570 CAAGGAACACACATGAAACTATAAA--GGTCTCAaggatttcatttttttctgtttactCATTTTGG-----ACCATTCATCTCA------TTTCTGTCCA------TAGCAATGACCCAAATCACGCGTACCTGTAGTCGGACATGTGCCTCTGCCAAACTGGACTTTCTCATGTCGCCAACTCGAAACAGAAGACACAATTTTCCGTCCCTCAAACAGATAACCTGTA----AAT-AAAGTATTCTTATT---------------------ATGC-TTCGTCGGGAATTC-------CTTACAGCattcttagaaaaaattagagtgGCAGCTCGTTTAATGGGTCGAGCCAACTTGGAAAAGATG----------ATTCCAGCCATGAGGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   488818 354 -  1162296 CAAAGAACCCATACCAAAATCTAAACTGGTT----GGACCTGATAACCTCTCCcataatcatttttgtaaatacCTCTTTCCCCATTACgttttctgtgaaaacttCCAACAAAAACC-----CACGCGTACCTGAAGTCGGACATGTGCCTCTGCCAAACTGGACTTTCTCATGTCACCCACTCGGAATAGAAGACAAAGTTTTCCATCTCTCAAGCAAATTACCTGTGa-ataat-aaatcatttttattttgtc---------------aatGT-TTTATAGTGTTTTA----TAGCATACCGCGTTTTTGGAGAAGATCAGTGTTGCAGCCCGTTTAATCGGTCTTGCTAGTTTAGAGAAGATG----------ATACCAGCCATAAGGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3493405 294 - 33334924 CAAGGAACTCATTCCAAActctaa---------------------tttttctcatttttcaatat--------------------------tttctgtg--------aaaatgTGGTTCATAAAACGCGTACCTGAAGTCTTACATGTGCTTCTGCCAAACTGGACTTTCTCATGTCACCAACTCGAAACAAAAGACAAAGCTTACCATCTCTCAGACAAATCACCTGTT----AAT-AAAGTGTTCTATCTC---------------------TGT-GCAAAAACATGTTT---------TACCGCATTCTtggagaaaatcaaagttgCAGCTCGCTTTATTGGTCTGGCAAGCTTGGAGAATATT----------ATTCCAGCCATTAAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        23391 298 +   783054 CAAAGAACTCATACAAAACTGTGAG--AACT-------------GTTTGATTCACtaattaat--------------------------------------------aaaaaatcattctaaAAACTCGTACCTGAAGTCGAACATGTGCCTCTGCCAAACTAGACTTCCTCATGTCACCAACTCGGAACAAAAGGCATAGTTTTCCGTCCCGCAAGCAAATGACCTGTA----AAC-AAAGTAGTTTATTATCAG-----------------ATGtggtaaaaaaattttt------gtgtaccgcattttttgagaaaatcaatgTTGCAGCTCGTTTTATTGGTCTTGcaagtttcgagaaaatt----------atACCGGCCATCAAAgt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      180948 315 +   258924 GGAGGAACTGTCGCGCTAGTTTTAT--------------TCCATTTCACACCATATaatgatt----------------------------ttc-------------caaaaa----------tatatTTACCTGTAGTCGCACATGGGCTTCGGCCAAACTGGACTTTCTCATATCTCCGACCCGAAAAAGTAAGCAAAGCTTGCCATCTCTCAAACAAATAACCTG------AATGAAAGTATCCATTATTAACCAGTAATTGACGCACAATTGT-TCTGTTgtgcaattaaaaaatgtgacAGCAGTTTTTGCGAAAG--------GCTGCAAATcccaaaaacaaaagaaatttcaagaaaattggAGCCCGCAAAATCTGTTATCAAAAT
i caeJap4.Scaffold54    I 14 C 0

a score=-30835.000000
s ce10.chrX               707802 209 + 17718866 CTGAATTAA------AACATATTTTTTA--------TGCATT------AATAATAA------CGGGAAGTTTGTTTGAAAATACTACGAAAGCTAAATGAAGTTTCAAAACATCAAGAAAATCTACAAAAAGCT--TTCCTGGCCATCTCATTAATCACAAAATAATTTTCAGAATTTTGGTGCTCAACTACTTTAAAACAGAAAAATATATTGAATACTGTTAAAAACGAACAAAC
s cb4.chrX              21172113  42 - 21540570 --------------------------------------------------------------------------------------------------------------------------CTGCAAAGAA---------------TTCATGGAATTAAGA----------------------------------------AAGAA------------------CAACTAACGAAC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62        23689  55 +   783054 -----------------------------------------------------------------------------------------------------------------------------ctaaaaatt-----------gtttcattgaactcgga----ttttctctctttt----------------------gaaaaat----------------tctactGAC----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      181263 164 +   258924 --TAATTAATCGCGCACTATATTCCATAACTAATAccgcatttttggaaaaaataagtgTGGCGGCACGTTTGATAGGACGTGctag-----------------------------------ttttgaaaatatgaTTCCT------GCCATTAGTGtctaaaatactttttttttgtttgatatcAACTAAACGGAAGTATAAAAC------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3493699   0 - 33334924 C
e caeRem4.Crem_Contig24   489172   0 -  1162296 C

a score=84916.000000
s ce10.chrX               708011 78 + 17718866 CTGAGTCATAACACCCCACATGAACTGGAAGCACATTGTGACAATTGTCAAAGGACATGCGTCTGTTGGGTACCTGAA
s cb4.chrX              21172155 78 - 21540570 CTGTGTCATGACGCCCCACATGAATTGAAAGCACATTGTGACAATGGTCAGAGGGCACGCGTCAGTTGGGTATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   489172 78 -  1162296 CTGTGTCATGACACCCCACATGAATTGGAAGCACATAGTGACAATGGTTAACGGGCAGGCGTCGGTTGGGTATCTGAA
i caeRem4.Crem_Contig24 C 0 I 122
s caeSp111.Scaffold629   3493699 78 - 33334924 TTGGGTCATAACGCCCCACATGAACTGGAAACACATTGTGACGATGGTTAGAGGGCAAGCGTCTGTTGGGtatctgaa
i caeSp111.Scaffold629  C 0 I 52
s caePb3.Scfld02_62        23744 78 +   783054 CTGTGTCATGACTCCCCACATAAATTGAAAGCACATAGTAACTATTGTCAGTGGGCATGCATCTGTTGGGTATCTGAA
i caePb3.Scfld02_62     C 0 I 29
s caeJap4.Scaffold54      181427 78 +   258924 CTGTGTCATTACACCCCACATGAACTGAAAGCACATTGTGACAATTGTTAGGGGACATGCATCTGTTGGGTATCTGAA
i caeJap4.Scaffold54    C 0 C 0

a score=-145.000000
s ce10.chrX               708089 2 + 17718866 GA
s caeJap4.Scaffold54      181505 2 +   258924 AC
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        23822 29 +   783054 I
e cb4.chrX              21172233 0 - 21540570 C
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=-7896.000000
s ce10.chrX               708091 83 + 17718866 GTATTACTAAGAAAACGTTT---TTTTTGCCGACAAAC----AAAAAAT----TATTTTATCTTCCAACAAAATACGTGTAAGATGCTTTTGGA
s cb4.chrX              21172233 13 - 21540570 --------------------------------ATAAAC----GAAAAAT---------------------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62        23851 94 +   783054 GTATGATGATTAGAGCggtcggatttttttcgataaacttGTGAGAAGTTTgcgttttcttcatttcacaaAGTAAGtgtttggaactttttga
i caePb3.Scfld02_62     I 29 I 3
s caeJap4.Scaffold54      181507 52 +   258924 GTATGGAAATGAAttctttc---ttatttttagGAAAG----CAAAAGT-----------------------------ATATAGTGCC------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=-3735.000000
s ce10.chrX               708174 93 + 17718866 ATTCGGAGCTAA--ATTTTTTTAGTCTTAAACGGCTGAGACGTGACCTTCCGAACAGAGGTGCTCGCCAATATTTTTG--TCCCTAAAAAGTGGTTT
s cb4.chrX              21172246 61 - 21540570 -------GCTAATCGTTTTCTTAGTT-------------------CTTTCTGA----------tcgctgatttttttgaaaactggaaacCTTGTTT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      181559 59 +   258924 --------------ATATACATATTT-------------------TTATGCGA---GAAATGAATAAacatattatta--ttattatattgtgtttt
i caeJap4.Scaffold54    C 0 I 151
e caePb3.Scfld02_62        23945  3 +   783054 I
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=-577.000000
s ce10.chrX               708267 65 + 17718866 TA----------TTTATGTGGGCGAAAACAGGCAGGCTGCCCTGGCTAGCAG------TCGTAAAATCGTCCATCGGTGAA
s cb4.chrX              21172307 55 - 21540570 TAcatgaaatcttttttgtg--------------------CCTGTTTGACGgaatagtttttaaaat------ttggtgaa
i cb4.chrX              C 0 I 52
e caePb3.Scfld02_62        23945  3 +   783054 I
e caeJap4.Scaffold54      181618 151 +   258924 I
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=0.000000
s ce10.chrX               708332 63 + 17718866 TGGTAAACTAGCCGTATTAATGGAATATGAGCAGATGGCTAACTTGGTACATCGGGAAACTTT
e caePb3.Scfld02_62        23945  3 +   783054 I
e caeJap4.Scaffold54      181618 151 +   258924 I
e cb4.chrX              21172362 52 - 21540570 I
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=-1215.000000
s ce10.chrX               708395 168 + 17718866 ATGAGCAAGCGTGATGGTTTCTACACGCTGAAACCGTCAAATGATAAAAGGCAAACTAGCCGAGTTACTGGAATGTGAGCAGGTGGCTAACTTAGTACATCCGGGTCATATAGATTGAATTCATTTTTAGTGATACATAAATGAAATTTAAGCCAAAAGTTATATCAC
s cb4.chrX              21172414 133 - 21540570 ATGAGCAA----GAAGgtctctaaa-----aaattttcagagggt-----------tggtcgaa--aatgatttttgaac--------aacaCCCTACAT-----TTaaacagaacattttttctttcagctcAGTTTTTCTTGAAGTAACACCTGGAAATGTTCAAT
i cb4.chrX              I 52 C 0
e caePb3.Scfld02_62        23945   3 +   783054 I
e caeJap4.Scaffold54      181618 151 +   258924 I
e caeSp111.Scaffold629   3493777  52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=-1171.000000
s ce10.chrX               708563 2 + 17718866 -TT
s cb4.chrX              21172547 2 - 21540570 -GG
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      181769 2 +   258924 CT-
i caeJap4.Scaffold54    I 151 C 0
e caePb3.Scfld02_62        23945 3 +   783054 I
e caeSp111.Scaffold629   3493777 52 - 33334924 I
e caeRem4.Crem_Contig24   489250 122 -  1162296 I

a score=235243.000000
s ce10.chrX               708565 405 + 17718866  
s cb4.chrX              21172549 557 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   489372 398 -  1162296  
i caeRem4.Crem_Contig24 I 122 C 0
s caeSp111.Scaffold629   3493829 398 - 33334924  
i caeSp111.Scaffold629  I 52 C 0
s caePb3.Scfld02_62        23948 396 +   783054  
i caePb3.Scfld02_62     I 3 I 90
s caeJap4.Scaffold54      181771 419 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=364.000000
s ce10.chrX               708970 3 + 17718866 TTA
s cb4.chrX              21173106 3 - 21540570 ATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   489770 3 -  1162296 GTA
i caeRem4.Crem_Contig24 C 0 I 170
s caeSp111.Scaffold629   3494227 3 - 33334924 AAA
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold54      182190 3 +   258924 tta
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        24344 90 +   783054 I

a score=-22.000000
s ce10.chrX               708973 3 + 17718866 TTG
s cb4.chrX              21173109 1 - 21540570 --A
i cb4.chrX              C 0 I 31
s caeJap4.Scaffold54      182193 3 +   258924 ctg
i caeJap4.Scaffold54    C 0 I 3885
e caePb3.Scfld02_62        24344 90 +   783054 I
e caeSp111.Scaffold629   3494230 1 - 33334924 I
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=664.000000
s ce10.chrX               708976 24 + 17718866 AGATTGAGGACGTGAAAAAAATAT
s caeSp111.Scaffold629   3494231 15 - 33334924 ---------Acgttggaaaaatat
i caeSp111.Scaffold629  I 1 I 275
e caePb3.Scfld02_62        24344 90 +   783054 I
e caeJap4.Scaffold54      182196 3885 +   258924 I
e cb4.chrX              21173110 31 - 21540570 I
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=0.000000
s ce10.chrX               709000 867 + 17718866  
e caePb3.Scfld02_62        24344  90 +   783054 I
e caeJap4.Scaffold54      182196 3885 +   258924 I
e cb4.chrX              21173110  31 - 21540570 I
e caeSp111.Scaffold629   3494246 275 - 33334924 I
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=393.000000
s ce10.chrX               709867 18 + 17718866 AAATAAGTCAATGGGTGA
s caePb3.Scfld02_62        24434 18 +   783054 AAgtaaaagaatagaaaa
i caePb3.Scfld02_62     I 90 C 0
e caeJap4.Scaffold54      182196 3885 +   258924 I
e cb4.chrX              21173110 31 - 21540570 I
e caeSp111.Scaffold629   3494246 275 - 33334924 I
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=-90.000000
s ce10.chrX               709885 2 + 17718866 CG
s caePb3.Scfld02_62        24452 2 +   783054 ag
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold54      186081 2 +   258924 CA
i caeJap4.Scaffold54    I 3885 C 0
e cb4.chrX              21173110 31 - 21540570 I
e caeSp111.Scaffold629   3494246 275 - 33334924 I
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=-287.000000
s ce10.chrX               709887 1 + 17718866 T
s cb4.chrX              21173141 1 - 21540570 T
i cb4.chrX              I 31 C 0
s caeSp111.Scaffold629   3494521 1 - 33334924 T
i caeSp111.Scaffold629  I 275 C 0
s caePb3.Scfld02_62        24456 1 +   783054 g
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold54      186083 1 +   258924 C
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   489773 170 -  1162296 I

a score=145517.000000
s ce10.chrX               709888 158 + 17718866 ACCTGCTTCTGTACCAACCGATTGCGTATCCGTCGTGACCCGCCAAGTCTGGGCGTTTTGAAAAACGGGTATTTCTTGTTTTTAACCAACGGCTCCTCAATGTCCAACATCCGTTGAGCTGTG-AAAATATCAGTTACAGAAGGGGACATTGCCACAGT
s cb4.chrX              21173142 158 - 21540570 ACCTGTTTCTGTACCAAACGATTACGAATACGGCGAGATCCTCCAAGCCGaggtgttttgaaaaatgggtaCTTTTTATTCTTGACCAGTGGTTCCTCAATGTCCAACATTCGTTGCGCTGTT-AAAAGATCAGTTACTGATGGTGACATCGCAACGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   489943 158 -  1162296 ACCTGCTTTTGAACAAGCCTATTCCGGATTCTTCTTGACCCTCCAAGTCTGGGCGTCTTGAAAAACGGATACTTTTTGTTCTTAACCAACGGTTCCTCGATGTCCAACATCCGTTGCGCTGTG-AAAATATCAGTTACAGAAGGAGACATTGCAACAGT
i caeRem4.Crem_Contig24 I 170 C 0
s caeSp111.Scaffold629   3494522 158 - 33334924 ACCTGTTTCTGAACCAGCCTATTACGAATACGTCGAGATCCTCCAAGTCGCGGCGTCTTGAAAAACGGatactttttgttcttgacCAACGGTTCCTCAATGTCCAACATCTGTTGCGCTGCG-AAAATATTAGTTACAGAGGGTGACATTGCAACAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        24457 159 +   783054 ACCTGTTTCTGTACCAATCTGTTCCGAATACGTCGAGATCCGCCAAGACGAGGTGCTTTGAAGAAAGgatatttcttgtttttgaccAACGGCTCTTCAATATCCAGCATTCGTTGTGCTGCGAAAAATATGTATTAGATATGATAATATTGCTGCAAT
i caePb3.Scfld02_62     C 0 I 1664
s caeJap4.Scaffold54      186084 158 +   258924 ACCTGTTTTTGAACCAGCCTGTTCCGAATCCTTCGAGATCCTCCAAGACGCGGAGCTTTGAAAAATGGATACTTCTTGTTTTTCACAAGCGGTTCTTCAATGTCCAACATTCGCTGTGCTGTG-AAAATGTCAGTTACAGAAGGCGACATGGCGACCGT
i caeJap4.Scaffold54    C 0 C 0

a score=-4143.000000
s ce10.chrX               710046  84 + 17718866 TGTCTTTCGACGTCTCCCATT-------TTCAGAG-----GCTT------------------------TAGTTATCAAATTAT-CAGTTTCT--CTAAAACTGAATTGCACAGATTTAGAAGG
s cb4.chrX              21173300 111 - 21540570 AGTTTTACGATGCCTTCCatttcgcattttcaaaataaaagtttCATTATCGTC-----AGATTCGATTTCTCTTCTAACCGt-tattttttggttaaaaCTG------ACGAGTCTGGATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   490101 114 -  1162296 TGTCTTTCGACGTCTCCCAATTTCAGGCTTAGGAATAAATATTTGGTTTTCATcctcaaaaagttg--ttctttTCTGACCAT-AATTTGGCGGTCAAATCTA------ACAATTCTCGATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3494680  81 - 33334924 TGTCTTTCGACGTTTTCCATT---CATTATAGGAA---------------------------------TCTCTTCCGAATCGTGTATGTTCCGGTCGAAACGG------ACAAATTTTGAACC
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      186242  86 +   258924 TGTTTTGCGGTATCTTCGGTTATTGTGATTAGCCATCAACATTATGT---------------------TTTTTATCAAATAAA---------AGTGAAGATTG-------CAGAATAAAAGGG
i caeJap4.Scaffold54    C 0 I 148
e caePb3.Scfld02_62        24616 1664 +   783054 I

a score=-22388.000000
s ce10.chrX               710130 235 + 17718866 AGGCGTAGATGCAGAAGACATTTGATTAATAGTAGAGTAGAGTAGTGGGAATTTTTGAAAATTGAGTAG-TAAAATAGAAGAAGTGAAAAAGAAGATACGCACTTTAGAGGTCGAGTTTCTCAAAAA-AGCAGGCTAGCTCATTTC-GGAGCAATACGGAGCA-------------ATACAGTTGG-----CAGAAAATGA---------GA--GTGTGGGGTGTA-------------------------------GAATTCGAATTT-GTATGCTCTCGTTCC-TATGTTTTTT----------TTTC
s cb4.chrX              21173411 246 - 21540570 ------GGAAGG---ATccattt-----tttaagaaaaaa---------------agaaagaataatAG-TCAGATAGAGTGTGTGAAAA------------------AGGTCAGATTGCTTCTCCT-TCGAGAGAAGATTGAATGCAGAGTGGCAGTGTGCAGCACATACTACG-CTACAGTTAA--ATGAATGAGATGG-----GGACGAGTGTGTAGAATACGAAT--GATGCGGACGCGTTgggttgaaatttgaatttgaggTC-GTCGGcttcttttct-tgttccttct---tatttcttttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   490215 229 -  1162296 ------GGAAGGAGAAGACATTG-----CTAGACGGGTAA---------------TGAAAG--TAGAAG-TGAG-TAGTAGCAGTGAAGA------------------GGGTC-----------------------GGATTTCTTG-AGACT-------AGCGGGAAATTTCACATTTGCAGTCAGTCACGAATAGGATGGGAGTAGGAtga--aagaagaatgagaattgGGTGAAGAAGAGGTcgttttgaattcaaatccAAATTCTGCTAGCTATTCTTGTCTGTTCCTTcccaatatattttttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3494761 199 - 33334924 ------GGATGGGGATGACATTT----------AGAGTCG---------------TTAAAGGGTGTTAGATGAG-TAGA-------AAAT------------------GGGTCAGATTTCTGTTGAGAATAAGGCAAAAAAGGCCG-TGAGTAATGGCTATGAGCACATTTTGTCAATACAGTTGA--AGGCTCAATAGAAGTGTGTGCCTA--AGGAAGAGtaaa-------------------------------gaattgaaattc-gtt--cttcttttct-tgttttgtcC--------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186328 148 +   258924 I

a score=20680.000000
s ce10.chrX               710365 109 + 17718866 -----AATTCTCTTTTCTTTAACTCTCTTTCTTAAGATT-------GGAAAAGGAATGTAGTGTATGTGTA---------------TGAGTGGCAATTCACGAGTTTGAG-GAAAAGAGGAG---GCTTTTTTTG------------TTTTT
s cb4.chrX              21173657 121 - 21540570 -----agccttcttctgtctag--gctttttttGAGATG--------CGAAAGGAATGAAGGGTGTA-GTCTGTTGAGGGTGACTATGAGTGCCAATTCATGAGTTTgagtgaaaagaagaa---gcaatttttc------------ttcgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   490444  97 -  1162296 -----cacTCTCTTC------------CTTCTTAAGATA---------GAAAGGAATGAAGGATGTA-GTC---------------TGAGCGCCAATTCATGAGTTtgagtgaaaagaagaagaggcaattttt-------------ttcct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3494960  89 - 33334924 ---------------------------TTCTCTCagata--------aaaaaggaatgtAGTCTGTGTGTC-------------TATGAGTGCCAATTCATGAGTTtgagtgaaaagaagag---gcaatttttc------------ttcct
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      186476 118 +   258924 AATGTTGTTCGCTTC------------CCCTTTCATACATATGAGCAAGAAAATGATGTAGTCTGAGCATG---------------TGAGTGTCAATTCATGAGTTTGTGTGAAA----GAG---ACCATTCTTCATGCTATAGTTGTTTTT
i caeJap4.Scaffold54    I 148 I 555
e caePb3.Scfld02_62        24616 1664 +   783054 I

a score=893.000000
s ce10.chrX               710474  81 + 17718866 CATTTTTTGCTTGCT----GCTTTTTCCGTTTCCTATT--------GTCAATGCGTCTTTAT----------------------TCATCGCTTTTAATTTTTTCGTAGATTTTTT--
s cb4.chrX              21173778  94 - 21540570 tctttttttctttacatagaaattttttgtttttttcc--agctgTCTCATTGCGTCTTTGTGAAGTCTTT-----TCCCCCTTTCGATGTTcttaatttt----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   490541 100 -  1162296 ccttttttctatgacagaggtttttttctgttttttccttatttctttcatcgtgtctttgt-----------------ctatgtcaatgcttttaatttttgtgTGCGGAATGAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3495049  94 - 33334924 ttttctt------atagaggttttttttgttttttctt---gctaTTTCCTTGTGTCTTTGTCAATGCTCTTAGCATTCTAAGCTTGTCactctttatttttt--------------
i caeSp111.Scaffold629  C 0 I 79
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I

a score=346.000000
s ce10.chrX               710555 34 + 17718866 GAG--ACAAGGAACATGGTGAAAACGGAACAATTTT
s cb4.chrX              21173872 31 - 21540570 -----tcgagaatcgtttcgaaaaaaaaacactttt
i cb4.chrX              C 0 I 242
s caeRem4.Crem_Contig24   490641 33 -  1162296 GAAACTGGAATATAATGCTGGAAAAACAACATT---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e caeSp111.Scaffold629   3495143 79 - 33334924 I

a score=-261.000000
s ce10.chrX               710589 96 + 17718866 GG---AGGAAACT-----TGAGATTTTTTTAGCTTCTGATTCATTTCAAAATAGAAGAATACTAGGAAACGAGGTGAGGATAAATAAAAGCTTGTTAACAGGAT
s caeRem4.Crem_Contig24   490674 85 -  1162296 GGTTTAGAAAAATGCGTACAATGTTTGTGTAGCAT---ATTCGGGTCGAGAT----------TAGTaaaaaagggatgtataagaaaaag------agaagaaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21173903 242 - 21540570 I
e caeSp111.Scaffold629   3495143 79 - 33334924 I

a score=-5695.000000
s ce10.chrX               710685 126 + 17718866 TTTGAATTATGATCTGAAATTTTTCGAATTTCGCAAATTTTTGAGTTTAAAAGTAAATTAGCGTAGCAA-------------------ACAAAGTTTGTGTAGGATTAAAAAAAGATTAAAATGCTTGGA------------------GCTAAAAA----AATTTGG
s caeRem4.Crem_Contig24   490759 151 -  1162296 tttaaa-------caaaaaattatgga-----gtagaaagttaaattcaaatttatatcGTTGTCATAATAAACTGCTTAGAGTctgtagaaaattttcgacaagttAAAAACCGTGAAAAAGGATTAGTTAGTATGATAAATtccagaataaaaa----aatttgg
i caeRem4.Crem_Contig24 C 0 I 127
s caeSp111.Scaffold629   3495222  42 - 33334924 ---------------------------------------------ttcgaaattccatc-----------------------------agaaatttt---------------------------------------------------aataaaaaagctaaattgg
i caeSp111.Scaffold629  I 79 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21173903 242 - 21540570 I

a score=-2407.000000
s ce10.chrX               710811 417 + 17718866 GATTCTTGCAAAATAAGGATTTTCGCAATTGCTAAAGATTTGACGATTTTATTGTCGTTTTTTGCTATTCGACAAGAAAAAAACACTCCATTAAGGTCGAACTTGGTGGTTC------TCAATTTTTAATAAAACTGAAAAATTAATTTACAGAAATTTTTGTAACTTGGACCTTTTCAAAAACTTCTGCATAATAAGATGTATATGTTTATTTAGATATGTAACAATTGAAGGAATGGTTGTCATCGTCTAAATAGTATAAGTCGTTTAGTATAAGTCAACAAAAAATTAAAAAATTACGCAATGAAAAATATGTGTAAAACTCGAAAAAATCTTGGATTGGACAAATGAGCAATAACAGAACCGCAAACAATTGTTGAAAACAGAAAGAAAATAGGCTACAAGGCCAAAACAGTTCATCTA
s caeSp111.Scaffold629   3495264 298 - 33334924 aattt---caaaat-----ttcttgcGA-----AAAGATCAGGAGATATTGTT----TTCtcaacaattttgaaaaagaggagcaaaaaactcacgaCG--CTTCGTTGATCCATAGACCATTTCACCaggaagttcaaaaagaaattt---gaaat-----agaCTGAGA------CAAAAA---------------------------------AGATATAAAAGTCGATAGAATGGTGAT-------------GTgt-----------------tcaatggaaaa--agagaataaggTA-----------GAGTGCAAATCGAATGGTTTTTCAAATGCCAAAAAGATTGAT-------TCTCTAAGA------GAgcacaaagaaaaactgatcaaCAATCGTATAACAAT---TTTt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21173903 242 - 21540570 I
e caeRem4.Crem_Contig24   490910 127 -  1162296 I

a score=-2235.000000
s ce10.chrX               711228 96 + 17718866 GTCAAAATGTTACAATTGGGAATGCAAATTCCAGCTCAACACAATAAAAAATGATGTGCAAAATTATTTAAAGA---AAAATAGAACATTCAACTTTTG
s caeRem4.Crem_Contig24   491037 83 -  1162296 GTTCaaatttctaaactaaaaat---aattttcacctaataatagcaaaaaag------aaaatcataaaaGGA---A----GGAACGTGGCATTCTGA
i caeRem4.Crem_Contig24 I 127 C 0
s caeSp111.Scaffold629   3495562 69 - 33334924 gcaaaagttttttgttcgaaa---------ttGACCAAACGTTAtgagaaaa------------catgaaaagaTGCA----GGAACATCGAAG-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21173903 242 - 21540570 I

a score=26875.000000
s ce10.chrX               711324 141 + 17718866 ---AAGACGACACAACACACCGTACAACTTGGCTTGCCCTCGGGCAACTTTCTCAGGGTTGAGTGGCGGCG------CCACAAAATGTGAACACA---------GGGCGCTGAGTAATCATGTGTGAGAACAAGAATGTACTATTTTTGT-----TGAAGAAAA
s cb4.chrX              21174145 146 - 21540570 ---AAAGCGACAC-GTATACCGTACAAT-CAGCGTGCCCACAGGGCATTTTCTCAGGCTTGAGtag-----------cgcaaaaaaaaaaacgcagaaTATGACGAGCGCTGAGTAATCACATGTGAGAA-AAAGttgcatt-tttctgtttcgttggaaaaaa
i cb4.chrX              I 242 I 615
s caeRem4.Crem_Contig24   491120 144 -  1162296 ---AAAACGG-AC-ACACACCGTACAATATGACTTGCCCTGAGGGCACTTTCTCAGGCTTGAGCGGTGGCatccaaacaaaaaaagaagaacacaaAAACTGA-GCGCGCTGAGTAATCATGTGTGAGAACACAATGGTACTATTACTAT--------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3495631 152 - 33334924 AAGGAAACAA-GC-TCACACCGTACAACTTGGCCTGCCCTCAAGGCATTTTCTCATGGCTGAGTGGTGGCCGTc---cgcagaaaaaagaacacaagAAA-GA-CAGTGCTGAGTAATCGGGTGTGAGAACTAAAATGTACtattttcat-----tgagaaaaa
i caeSp111.Scaffold629  C 0 I 244
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I

a score=0.000000
s ce10.chrX               711465 1 + 17718866 A
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3495783 244 - 33334924 I
e caeRem4.Crem_Contig24   491264 0 -  1162296 C

a score=-1086.000000
s ce10.chrX               711466 426 + 17718866 CTGAAATTGTTTTGGAAACATTTCTACTTTGGATTGACAGAGCAAATAATTTTTGTTTAGTTTTTTCCATCTAACTATGCAAGAAATTTGATTCAAAATGTTTGCAGTGCACTGACCAATAAGCTTCGTATTTTTTG-AACACTAATTTTGCTT--AGATTGAGACGCGGGAGA---TTGTATCA--------AAAACGTAAGATAATCGACAACA-AGCAGTGCATTGATTGCTCAGAATGTTCAAAACAACCGTTGAATATAAAACAGCTAATCCTGACAGACTAATATCCGCAGTCATACCTCAGTGCAAACTCATCAAAAGAGCATTCAAAGAGTTAACGACTGGGCTGGTTTCGTTTCAA-ATTTTAATCACGAATGTGTGAAAATGTAGTATGGGTCGAAAAGTTTGGTGGG------------GTGGTTGT----CAATGCACTGACTAAC
s caeRem4.Crem_Contig24   491264 358 -  1162296 ------Ttgtcttcgaaaaatttacaat-----ttgATGCAAGAAATGGTGcttat---gttttt---------------gaaaaatcagttatAAAATG------------------ACGATTCTCATATGATTTGTAAAAATATGTGTTCTGGAAGATCAAGATCggagaaaaacaaatatcaaaacttggaaaatttgagatgATCGACTAGATAACAAATCACGAGTTggattaaaaattttatcgaactcttgaagttcaaa---------------------------------------agttcaaatt--tccaaatggaaaaaagacgGTTGAC---------AGTTTTGTCTAAATGTTCAAATGCCCAATAAATGCAAATGCag--agaaacggaaaa-ttgATGTGTATTTAGAAATATTAGTTGTATTACAATTAACTCATTAAC
i caeRem4.Crem_Contig24 C 0 I 95
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3495783 244 - 33334924 I

a score=0.000000
s ce10.chrX               711892 101 + 17718866 AGGTAAGAAGCACTGACAAAAAATTTCAATGCACTGACCAAAATTTTTAATGCACTGGCCAAAATGTTCAATGCACTGACCAGAATTTTCAATGCACTGAA
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3495783 244 - 33334924 I
e caeRem4.Crem_Contig24   491622  95 -  1162296 I

a score=798.000000
s ce10.chrX               711993  80 + 17718866 CAAACTTTGCTATGCACTGACCA-----AAATGAA------------------------AATGTATTAGCTAATATCATGATTACTTGAAGTGGCCACGGAAAGAACAA
s caeRem4.Crem_Contig24   491717 107 -  1162296 CAACTTTTGCGAGGCGATTGCCAGTTCGAAATAAAACTATGGCTCCCAACCGCTAGCGGAATGTGTTTTATAATTTCTTGCTTTCTT--atcaatcacaaaaaaaataa
i caeRem4.Crem_Contig24 I 95 I 61
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3495783 244 - 33334924 I

a score=0.000000
s ce10.chrX               712073 29 + 17718866 GTTAAAATGTATAATTTTTCTTTGTGGAT
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3495783 244 - 33334924 I
e caeRem4.Crem_Contig24   491824 61 -  1162296 I

a score=390.000000
s ce10.chrX               712102 16 + 17718866 TTGCAAGGTCATACAT
s caeSp111.Scaffold629   3496027 16 - 33334924 ttGTAAGATACTAGTT
i caeSp111.Scaffold629  I 244 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeRem4.Crem_Contig24   491824 61 -  1162296 I

a score=12754.000000
s ce10.chrX               712118 293 + 17718866 ----------ACACGCAACGTG-AAAAGCCTTGAGAAACTATACCGAGAGAAAGAAAGA---------GAGAAAGCAGGAAA---AGTGT-----------------AGAAATGTGGCATTAATAAAAACAGTTGGAAAATATTTATTGGAAACAGTGTTTCGTGATGTTTTTCATCACAAAAAAAAGAGCACAAATCTTATTAGATAATTG-ATGAG-AGTGCTGAGAGAAGCCAAAGAA-AAAATAAATGAATAGATAATGTTTTTT------GGCAATGAGCGCATCATT-GGTTTATCCGTTTTTGGTGAAAAGAAGGCATG----TGGAGATGAACACTTAG
s caeRem4.Crem_Contig24   491885 306 -  1162296 ---ACGGAGAACGCGGACAACGCAAAATTGTCGACAGG-------CGGAGAAAGAAAGGTCATTcggaaaaattccaaaaaatatattgtaTAACTGGGAAGCTGAGGAAAATATGGCCTTGAT-AAAACAAT--GCAATCA--------GAACAGTTTGTTG--------TTCAT------------AGCACAAATCCTATTAGATAATTGAACAAGCATGGAGGAGAAGACCGAccggctgaaaaaaatgaatagataATGTTTTTCTCGTTATATAAAGAGAGCATCATCGGGTTTATCCTTTTCTAGTgaataaaaaacatgaataCGGAGATGAACGCTTGG
i caeRem4.Crem_Contig24 I 61 I 169
s caeSp111.Scaffold629   3496043 282 - 33334924 GTTCCCAACAacgaaaactttg-aaaagtgtcaacAAG----ACACAGGGTCGGACAAG-CACTCAG-CACAtggcaagaaa-aaattgtatcA-------------AGAGacatgaaattga--------------aaata--------gaacagtgtttct--------tcaatttc---------aacatTAACCCTATTAGATATTTGTATAAG---GGAAGAGGAAGCctaaagaa-ataaaaaatgaatggataatgtttttcttatt-ttttatgagAGCATCATAGGGTTTATCCGTTTCTAGTGAATAGAAAACATAAATATGAAGATGAACGCATGG
i caeSp111.Scaffold629  C 0 I 257
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I

a score=0.000000
s ce10.chrX               712411 608 + 17718866  
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e cb4.chrX              21174291 615 - 21540570 I
e caeSp111.Scaffold629   3496325 257 - 33334924 I
e caeRem4.Crem_Contig24   492191 169 -  1162296 I

a score=60.000000
s ce10.chrX               713019 2 + 17718866 AT
s cb4.chrX              21174906 2 - 21540570 AC
i cb4.chrX              I 615 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e caeSp111.Scaffold629   3496325 257 - 33334924 I
e caeRem4.Crem_Contig24   492191 169 -  1162296 I

a score=153.000000
s ce10.chrX               713021 22 + 17718866 ----AGTCGATCAAAAATTGATTCAT
s cb4.chrX              21174908 23 - 21540570 AGTGAGGCAAAGAGGAAtttgag---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   492360 22 -  1162296 ----AATCAATCAACAATTTGAGCGT
i caeRem4.Crem_Contig24 I 169 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I
e caeSp111.Scaffold629   3496325 257 - 33334924 I

a score=4254.000000
s ce10.chrX               713043 41 + 17718866 ------------AAAGAAAGGAGAGAGGCCTACAGAAAGTG---GGTGGAAGGCGA
s cb4.chrX              21174931 48 - 21540570 --------aagagagaaaaagtgtgAGCTTGATATACAATAGTAGACGGAAGACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   492382 54 -  1162296 AGGCAAGAAAGAAAGGAGAAGGAGACGCTCAATAGACAGTGT--GGCGGGAGACGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3496582 38 - 33334924 ------------aaagaaaagtgtgaGCTCTATAGACT------GGGGGTAGTCGA
i caeSp111.Scaffold629  I 257 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      186594 555 +   258924 I

a score=26480.000000
s ce10.chrX               713084 43 + 17718866 ATAATTAGAAAAGCT-CAAAAACAAACGCTAGGTTTCACAAATA
s cb4.chrX              21174979 41 - 21540570 ATAATTATAAAAGCT-AAAGAACAAACTTTAACTTTCACAAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   492436 43 -  1162296 ATAATTACAAAAGCT-CAAGAACAAACGCTAAGTTTCACAAATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3496620 44 - 33334924 ATAATTACAAAAGCTACAAAAACAAACGCTAAGTTTCACAAATA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      187149 43 +   258924 ATAATTATGAAAGCC-TAAAAACAAACGTTAGGTTCCTCAAACA
i caeJap4.Scaffold54    I 555 I 125
e caePb3.Scfld02_62        24616 1664 +   783054 I

a score=-3048.000000
s ce10.chrX               713127 17 + 17718866 TTGA-GAAGGAGAA-----GTGA----
s cb4.chrX              21175020 17 - 21540570 -----GATAGATGA-----GAAAACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   492479 24 -  1162296 G---TGAGGGAAGAAGAGTGAAAGTGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3496664 18 - 33334924 GTGCTGAGAGAGTA-----GAGA----
i caeSp111.Scaffold629  C 0 I 887
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I

a score=1575.000000
s ce10.chrX               713144 10 + 17718866 GCCGCTGGCT
s cb4.chrX              21175037 10 - 21540570 GCCACCTGCT
i cb4.chrX              C 0 I 1454
s caeRem4.Crem_Contig24   492503 10 -  1162296 GCCACCTTCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I
e caeSp111.Scaffold629   3496682 887 - 33334924 I

a score=182.000000
s ce10.chrX               713154 2 + 17718866 TT
s caeRem4.Crem_Contig24   492513 2 -  1162296 TT
i caeRem4.Crem_Contig24 C 0 I 859
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I
e cb4.chrX              21175047 1454 - 21540570 I
e caeSp111.Scaffold629   3496682 887 - 33334924 I

a score=0.000000
s ce10.chrX               713156 944 + 17718866  
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I
e cb4.chrX              21175047 1454 - 21540570 I
e caeSp111.Scaffold629   3496682 887 - 33334924 I
e caeRem4.Crem_Contig24   492515 859 -  1162296 I

a score=242.000000
s ce10.chrX               714100 4 + 17718866 AACA
s caeSp111.Scaffold629   3497569 4 - 33334924 aata
i caeSp111.Scaffold629  I 887 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I
e cb4.chrX              21175047 1454 - 21540570 I
e caeRem4.Crem_Contig24   492515 859 -  1162296 I

a score=-147.000000
s ce10.chrX               714104  7 + 17718866 ----TATTAAG
s caeRem4.Crem_Contig24   493374  7 -  1162296 ----TATAGAG
i caeRem4.Crem_Contig24 I 859 C 0
s caeSp111.Scaffold629   3497573 10 - 33334924 tatgtatgaa-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I
e cb4.chrX              21175047 1454 - 21540570 I

a score=1358.000000
s ce10.chrX               714111 24 + 17718866 AAAAGCAAGAAAAGTCAAG---CTTAC------
s cb4.chrX              21176501 23 - 21540570 aaaatcaaaaactgacggg----taa--c----
i cb4.chrX              I 1454 C 0
s caeRem4.Crem_Contig24   493381 25 -  1162296 AAAGTCAAAAACTGACGGG----TCACCC----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3497583 33 - 33334924 aaagtcaaaaactGACGAGGGGTTTACCTTCGC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        24616 1664 +   783054 I
e caeJap4.Scaffold54      187192 125 +   258924 I

a score=27786.000000
s ce10.chrX               714135 211 + 17718866 CTCGAATTGCTTTGTACATTTGCAACCAACAG--A-AAAAAGGGGAAAAATGAAAGAGAAAAAGAGACATGAGACCTATTTATTGTCTTT-CTTCCCAACTTGTGTAGGC-------CTCTGAG----GCAATGCAACACTGATTTGTTTTCTGACAGCaaaaaaaaatatagatgaaatataaaagaaaa--ggtaaa----agtaaaatgaaagaaaaaagtggagggtg
s cb4.chrX              21176524 194 - 21540570 ctcaaattgcttc---------------acagaaa-aaaaagaaaaaa-----------aaaagagacaggAGACCTATTTATTGTCTTTCCTTACCAacttgtgtgtgtgtgtgggaCGTGTGCATAGCAATGCAACACTGATTTGTTTTCTGACAGC-------AGTATGCATGAGATGGAATAGAAAA--AGAGCATGCGGAAAAGC--AAtccaaaaactctaaaatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   493406 177 -  1162296 CTCAAATTGCTTC---------------ACag--a-gacaagaaaaaa-----------gagagacagGAGAGACCTATTTATTGTCTTT-CTTCCCAACTTGTGGACAC---CGGGTTGTGTGCATGGCAATGCAACACTGATTTGTTTTCTGACAGC-------AATAT-------ATGcaataggaaa--aaagaa----gaagaaa--aatgaaaaaagtagcggtta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3497616 142 - 33334924 CCCAAATTGCTTG---------------AGAG--ACAACGGAGGAAAA----CCGGGGGGAAAGAGACATGAGACCTATTCattgtctt--ctctttttc---------t-----aactATGT-----GCATTGCAACActgatttgtttt-tgac------------tGCGCA----ATGGAAGAATTAACGAATAAA----GG---------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        26280 161 +   783054 CTCAAATtgcttt---------------ccaa--a-aacaaaaaaaaa----gcaggaGAAGGTAGACATAACCCCTattcattgtctt--tttttcaactggcCTGGAT-----AACTATGTGCTTGGCATTGCAACACTGACTTGTTCT-TGACAGC-------AATACgcac---aaagaaaaataaa--aatgaa----ga-------------------------ta
i caePb3.Scfld02_62     I 1664 C 0
e caeJap4.Scaffold54      187192 125 +   258924 I

a score=77919.000000
s ce10.chrX               714346 131 + 17718866 aatataaaagatacatataaaCGTTTTTGGTAAAACTTACCTTGTTCTCTATCCAACAAAAGCGATCTACCAGGGAGACGTCCATTGGCGAGCGCCAATCGTTCAACTCGTTCCACGAAATTCTGGGGCAT
s cb4.chrX              21176718 100 - 21540570 aATAG-------------------------------TTACCTTGTTCTCGGTCCAGCAATAGTGATCTGCCGGGAAGACGTCCATTGGCCAGAGCCAACCGCTCCACTCGCTCCACAAAATTTTGTGGCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   493583 100 -  1162296 aaaag-------------------------------TTACCTTGTTCTCTGTCCAACAGGAGAGATCTGCCTGGAAGACGTCCATTGGCTAGGGCCAATCGCTCTACTCGTTCCACGAAATTCTGTGGCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3497758  95 - 33334924 ------------------------------------TCACCTTGTTCTCTGTCCAATAAAAGTGATCTGCCTGGAAGTCGTCCATTGGCGAGGGCCAGGCGTTCCACTCGTTCCACAAAATTTTGTGGCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        26441 100 +   783054 atcGT-------------------------------TTACCTTGTTCTCTGTCCAATAGAAGGGATCTGCCAGGAAGACGCCCATTTGCAAGCGCCAGCCGTTCCATTCGTTCCACAAAGTTCTGTGGCAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      187317 131 +   258924 aagaaaaaagaaaaaaggaaaaagattaaacaaaaCGAACCTTGCTCCCTGTCAAGCAGAAGTGATCTTCCAGGTAGGCGTACATTCCTAATGCCGAGACGATCCACTTTTTCCACAAAGTTTTGAGGCAT
i caeJap4.Scaffold54    I 125 I 3184

a score=795.000000
s ce10.chrX               714477 5 + 17718866 ACCCT
s cb4.chrX              21176818 5 - 21540570 TCAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   493683 5 -  1162296 ACCCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3497853 5 - 33334924 ACCCT
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_62        26541 5 +   783054 CCTCT
i caePb3.Scfld02_62     C 0 I 1081
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=5466.000000
s ce10.chrX               714482 19 + 17718866 ----TTCTAATTGAGATCTGGAA
s cb4.chrX              21176823 21 - 21540570 TAAT--TGAATTGAGATCTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   493688 23 -  1162296 TATTTCTAActtgagatctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3497860 19 - 33334924 ----ATTTAATCGAGATCTGAAA
i caeSp111.Scaffold629  I 2 I 411
s caePb3.Scfld02_62        27627 19 +   783054 ----TTCTAAATatgattaaaaa
i caePb3.Scfld02_62     I 1081 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=-1102.000000
s ce10.chrX               714501 2 + 17718866 TT-
s cb4.chrX              21176844 2 - 21540570 CT-
i cb4.chrX              C 0 I 194
s caeRem4.Crem_Contig24   493711 2 -  1162296 at-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        27646 2 +   783054 -tt
i caePb3.Scfld02_62     C 0 I 3370
e caeJap4.Scaffold54      187448 3184 +   258924 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I

a score=142.000000
s ce10.chrX               714503 83 + 17718866 TTAGGCCTAATTAAATACAAACAAAGACAAAAAGA----GAAAAAACGAAGTTTGTTGAAAATTTTGAGCAACAACAAAGGAGTATC
s caeRem4.Crem_Contig24   493713 63 -  1162296 -------tgattgaatgTGAGAAGAGGCGGAATAGTTTTGGAAGA------------GAAGATTT-----GACAAAAATGCAGTGTT
i caeRem4.Crem_Contig24 C 0 I 22
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21176846 194 - 21540570 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I

a score=0.000000
s ce10.chrX               714586 44 + 17718866 CTTGTTTATTAGTTTTGCCATGTTTATAGTTTTGTGTATGTGGG
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21176846 194 - 21540570 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I
e caeRem4.Crem_Contig24   493776 22 -  1162296 I

a score=-389.000000
s ce10.chrX               714630 127 + 17718866 AGGAGGGGGTAGTTATTAAGGTGGTCAGTGCGAATTTGGCGTTTTAGGTTTTTTTTAACGCCAGCTTTTTATTTTTGAAACTCAATTGCAAAGGGGTATCTTCATTCTTGATTTCTACTAAAATTTG
s caeRem4.Crem_Contig24   493798  79 -  1162296 AGAAGGGAATAACCA----------AAACGCGGA---GAATTATTgtgttttgtttag---aaatgttttact--------------------gggcat------------tttttgctcaaattag
i caeRem4.Crem_Contig24 I 22 I 191
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21176846 194 - 21540570 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I

a score=0.000000
s ce10.chrX               714757 205 + 17718866 CCACAATAGTCTGAAATTCGACATTGACGAAAATAATAAGAATGTTCAGAAATCTTCTAAATTATAAGACCAGACTATTCTTGGACaataatttttttttgaaataattatattattgatttattttttCAATTCAGTTATTTACGTTTTTCAAAGTAATTTTTTTTCTGAACTAAAACaatttttataattaaatttaaaatCT
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21176846 194 - 21540570 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I
e caeRem4.Crem_Contig24   493877 191 -  1162296 I

a score=-1818.000000
s ce10.chrX               714962 411 + 17718866  
s caeRem4.Crem_Contig24   494068 509 -  1162296  
i caeRem4.Crem_Contig24 I 191 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21176846 194 - 21540570 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I

a score=55.000000
s ce10.chrX               715373 72 + 17718866 AAAGAAGTGAAAATGTTGA-AAAATTGGAGGA---AAAAAAACTGGGGAGGCGT---AGGGGTGAGCTAAGGATTCAAT
s cb4.chrX              21177040 67 - 21540570 AGAAAAACGAAATGGTGAACAAACTCGGAGAA------------GAAGGTCTATTCGGGGaaaaaaaTAGTGAGTCTAT
i cb4.chrX              I 194 C 0
s caeRem4.Crem_Contig24   494577 73 -  1162296 AAAGAGGTGTCACggaaaaaagaattggaagagTGGGAGGCACTGAGAGACCAT----GGGAGAAGATGGTGAG--AAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e caeSp111.Scaffold629   3497879 411 - 33334924 I

a score=50627.000000
s ce10.chrX               715445 300 + 17718866 -ATAGTAGTGGAGCATTCTT-----CGGGCCGCAGGTGTCATTTTCGTGTCAGATTGAATGGCATTAAAAAGTTCGTTCGGGTTTTTAGAGGGCC----------------------ACTTGTTTTTTGT--------------------------TCGTCCACTAG-------------------------TTTCTCTGCATTGAATTTGGTCTCC--TT---------ATTCGA-GTGTCATTTTGCATTTCTTTTGTTTCTTCTTC-ACTGCATTTCGGAAAAAAGTAAATCTTTTCTATTCC-----------------TTCCTACTTGTTTTCAT-CGGAGTAACATGCCCAATGCTTGGGTCTTCTCCCCC--TTTCCGAAAACAATTTAATCATGCTCAAAAAAA
s cb4.chrX              21177107 360 - 21540570 GAAAAGAGTGGG-AATTATT-----TGGGACGCAGGTGTCATTTTCGTGTCACATTGAATAGCATTAGAAAGTTCGTTCG---TTTCAGTGAAACGagacaaaaaatctttttttctacttattttttgtttgtccttttttttccttggttccttccttactctatctttgttttcctgtttctctctaggttttttttcagttatttt-gcCTCC--TTCTTCCTTACACTGAA---GCCAttttgca-tttctttgtttcttttttcacttcattttcg--aaaagtaaacctgccttctttt---------------------------tttttat-tggcGTAACATGTCTATGGTTT--ACTTTTCTAGCTTACTTTTGAACACAATTGAATCatgc----agaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   494650 332 -  1162296 AggggggggggA-CATTCTT-----TGGGACGCAGGTGTCATTTTCGTGTCAGATTGAATAGCATTAGAAAGTTCGTTCG---TTTCAGTGAGACGAA-----------TAGCttctatttatgttttgt---tctatttttttcctccgtctctttctctctctctctt----------------------ccgtttttcagtcatttt--tttgc--tttctccttacactcca-gtgtcattttggattttctttgtttctttttt-acttcatttccg--aaaagtaaacctcccatttttc--------------------tgtgttgtttttATCTGGAGTAAAATGTACATGG-----AGCCGCACCGCT--CTTCCGAAAACAATTGAATCATGCTtagaggaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3498290 324 - 33334924 -ATAGTAGGGGA-CATTCTTCTGGGCGGGACGCAGGTGTCATTTTCGTGTCAGATTGAATAGCATTAGATAGTTCGTTCG---TTTCAGTGAGAC------------------TTCTAtttatgttttct--------------------tctctctctccctctctctc----------------------ttttccgaCAATTATGTT--CCTGTCGTTCTGTTTTACACTCCCTGGGCCATATAGCATTGTCTTTGTTTCTATTTC-acttcatttcga--aaaagtaaaCCTCCCGctctcttcaatctctctcttcctctctacTTTGTTTTCA--TGGCGTCACAAACACACTG--------------GCT--CTTCCTAAAACAATTGAATCATGTTTgaagaaa
i caeSp111.Scaffold629  I 411 I 576
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=688.000000
s ce10.chrX               715745 17 + 17718866 AGGTG--------GAGCTTTTTCTT
s cb4.chrX              21177467 25 - 21540570 aaaagatagGTGGGAGATTTTtctt
i cb4.chrX              C 0 I 587
s caeRem4.Crem_Contig24   494982 25 -  1162296 gagagaagaaggtgggctcttccct
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e caeSp111.Scaffold629   3498614 576 - 33334924 I

a score=250.000000
s ce10.chrX               715762 5 + 17718866 TGTTT
s caeRem4.Crem_Contig24   495007 5 -  1162296 ttttt
i caeRem4.Crem_Contig24 C 0 I 791
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I
e caeSp111.Scaffold629   3498614 576 - 33334924 I

a score=0.000000
s ce10.chrX               715767 975 + 17718866  
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I
e caeSp111.Scaffold629   3498614 576 - 33334924 I
e caeRem4.Crem_Contig24   495012 791 -  1162296 I

a score=381.000000
s ce10.chrX               716742 24 + 17718866 AAAATGAG-GAAAAAGAAAAAAATC
s caeRem4.Crem_Contig24   495803 25 -  1162296 AAACTGAGAGCAAAAAGTTCGAATc
i caeRem4.Crem_Contig24 I 791 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I
e caeSp111.Scaffold629   3498614 576 - 33334924 I

a score=547.000000
s ce10.chrX               716766 120 + 17718866 AGATAAAAGAACTAAAAACAAAAAAG--------TTTGCAAG-ATCCATATTTTTTTGAATTTCAACTTTTTATCTTTAATGATCTGTAAAAAAGTTGGAAATGGAGCGGAAAGAGCAAGTTT----TGATCT
s caeRem4.Crem_Contig24   495828  73 -  1162296 aga----------taaaacaaaaaag--------tttgcatCCTATTATCTATTCCTAAAATCC----GTTTATCTTCCACAATCTGTAAG---------acta-----------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3499190 124 - 33334924 agatttga-aatctaaaagaaaaatggcaCAAGTTTTGCATTCAtttatctattttcaaatctc----cATTATCTTTAATGATCTGTAAGCAA---Aaaagtagag-aaaaagagcaatcTTGTGGTGATCC
i caeSp111.Scaffold629  I 576 I 25
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I

a score=-81.000000
s ce10.chrX               716886 39 + 17718866 ACTCAAAAAAAAACACG-------------------AAAAGTTGAAAGAGCAAAAAAG
s caeRem4.Crem_Contig24   495901 54 -  1162296 actcaaaaaaaagcaCTCTTGTCTCGAAATCCCCCCAAAAGTTTT----GCTGACGTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I
e caeSp111.Scaffold629   3499314 25 - 33334924 I

a score=573.000000
s ce10.chrX               716925 2 + 17718866 TC
s caeRem4.Crem_Contig24   495955 2 -  1162296 TC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3499339 2 - 33334924 TC
i caeSp111.Scaffold629  I 25 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21177492 587 - 21540570 I

a score=4140.000000
s ce10.chrX               716927 10 + 17718866 ATCATATTTA
s cb4.chrX              21178079 10 - 21540570 ATAATGTTTA
i cb4.chrX              I 587 C 0
s caeRem4.Crem_Contig24   495957 10 -  1162296 ATCATATTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3499341 10 - 33334924 ATCATATTTG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        27648 3370 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=18966.000000
s ce10.chrX               716937 36 + 17718866 TTATGTCAATCTTTTTGAGCCACAATTTCCTTAT--TC
s cb4.chrX              21178089 36 - 21540570 TCTTGTCAATCTATTTGATACACTGTTTCCTTATTC--
i cb4.chrX              C 0 I 194
s caeRem4.Crem_Contig24   495967 34 -  1162296 TTATGTCAATCTACTTGATACACAATTTCCTTAT----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3499351 34 - 33334924 CTCTGTCAATCTATTTGATACACAATTTCCTTAT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        31018 34 +   783054 TTACGTCAATCTTTTTGATTCACAATTTACTTAT----
i caePb3.Scfld02_62     I 3370 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=4641.000000
s ce10.chrX               716973 10 + 17718866 TCAAAGTTGC
s caeRem4.Crem_Contig24   496001 10 -  1162296 TCAATGTTGC
i caeRem4.Crem_Contig24 C 0 I 233
s caeSp111.Scaffold629   3499385 10 - 33334924 TCAATGTTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        31052 10 +   783054 TCAATGTTGC
i caePb3.Scfld02_62     C 0 I 714
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178125 194 - 21540570 I

a score=86.000000
s ce10.chrX               716983 6 + 17718866 GTTTTT
s caeSp111.Scaffold629   3499395 6 - 33334924 CTCCTT
i caeSp111.Scaffold629  C 0 I 345
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178125 194 - 21540570 I
e caeRem4.Crem_Contig24   496011 233 -  1162296 I

a score=0.000000
s ce10.chrX               716989 1182 + 17718866  
e caePb3.Scfld02_62        31062  714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178125  194 - 21540570 I
e caeSp111.Scaffold629   3499401  345 - 33334924 I
e caeRem4.Crem_Contig24   496011  233 -  1162296 I

a score=260.000000
s ce10.chrX               718171 4 + 17718866 GCAG
s caeSp111.Scaffold629   3499746 4 - 33334924 GCAA
i caeSp111.Scaffold629  I 345 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178125 194 - 21540570 I
e caeRem4.Crem_Contig24   496011 233 -  1162296 I

a score=385.000000
s ce10.chrX               718175 77 + 17718866 TTACACAATAAAAAAC-------AAAATGGAGATAGTGATAATTCTC--TGCTTCTGCGTTAACCTATAAAAAGTTTCGAGAAGCG
s cb4.chrX              21178319 73 - 21540570 TCACACAATTacaaattattttaaaaatggaGCAGGATATAcctatttctctttttg-----------aaaaactttagaGAAG--
i cb4.chrX              I 194 C 0
s caeSp111.Scaffold629   3499750 58 - 33334924 TTAcgtgaaaaaagagt------aaaatgaaaaaagctcaacttctt--tctttcaa-----------aaaaactat---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e caeRem4.Crem_Contig24   496011 233 -  1162296 I

a score=34624.000000
s ce10.chrX               718252  96 + 17718866 GGGAAAAAATGATGAGATTTCGGAAAACATGCGAAAAAAACGAGGCAAGGGCA-----TGCAGT-------ACCTGACGGTACTTGAGAATAAGGATAAATGAGCTTT
s cb4.chrX              21178392  99 - 21540570 -------AATgatgagattttcaagaacaCGCAAAAA--GTGGGACAAGGGCAGTGTGTGTTAGAAATAAAACCTGCCGGTACTTGAGAATGAGGATGAATGAGCTTT
i cb4.chrX              C 0 I 3479
s caeRem4.Crem_Contig24   496244 102 -  1162296 ggaaaaaaatgatgaggtTTTCAAGAACACGCAAAAA---CGAGGCAAGGGCAGT---TGTAGGGAATAAAACCTGACGGTACTTGAGAATAAGGATAAATGAGCTTT
i caeRem4.Crem_Contig24 I 233 C 0
s caeSp111.Scaffold629   3499808 102 - 33334924 gaaaaaaggTGATGAGGTTTTCAAGAACACGCGAAAA--ACGAGGCAAGGGCAG----TGAGAGGAAATAAACCTGACGGTACTTGAGAATAAGGATAAATGAGCTTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=14906.000000
s ce10.chrX               718348 400 + 17718866 TTCTTTTAC----TAAACCG--AGCAAAAGAAAGAGAGA-GAGAGAAAGCACAACTAGATTGTTGT------AAGTATTTTAT----TGACT-GACCCTGG---ACGAACAG---CGCCCATTACATTCTTCACT----------------TTTTTGCATGTTTTTT----CTAGTTCAAAACAAAACCAAAAAGCGGTGAGAGGATTAGAGAAGAGTTGTTAATTTGTTGGAGC-AGTTGACAGAA---AACCGAGTCAGTTGATTGAGTACTCTTTCAAAGTTAATTAACA-------GGAAAA----------AATTCAAACT------------CTGAAATTATCGCAAACAAAAACTTGGGAGATTGAGCTCAAAA----------------------AAGTGAAAACG------AGGCAGACAGGAGAAATTGTCATTTTCGGAGAAGATTGGATTTTTATGTGAAAATGTTGGTTCATATAGCAACAAACGATCTGGA
s caeRem4.Crem_Contig24   496346 451 -  1162296 --CTCTTACTGAATAAACCACTAAC---AGAAACttgct-caaa--------aacttgaatatcGTCA----AAGTGTTGTAT--GTTGACT-GACCCCAGCAAACGTTCAA-----CCCAtt------tttgct-tttagttttggtc--tttcttcattttttctgttactATTTC-AAATACA-----------GAAAGAGGATTAGAGAAATGCAGTTAATTTGTCGAGTTgagttggtttttttgttgtgggGCCCTTGATTGAGtacatttttaaagttaatcaacatttccgtcaaaaactcgGGTAGCAATATTGACTGAAcatctcaaaataaaaatgttgaagagaaaatc-----agaaaggaatcaaaaagaatcaaaaagagaaatatagaaatgaaaaagggagaagGACTTAGACTCAATAATGTCCTATTCCATGAAGATTggatttttatgtgaaaatgaGCTTGTGTATGGCAACAAACGATCTA--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3499910 399 - 33334924 --TTCTTAC----TAAACCACTAACATGAGCAACAAACGACAGA--------AACTAGAATATCTTCAGGAGAAAAGTTGTATTGATTGACCGGACTCCAAAAAACATTCAGGCACCCCCCTT------TCTACTAGTTGGTTCTTGTCATTTTCTCCATTCCCtct-----tatttcaaaacaga-----------GGAAGAGGATTAGAGAAATGTAGTTAATTTGCTGAGTT-Acccggttttt---tttcgaagccCTTGATTGAGTGCATTTTGAAAGTTAATTAACGTTTCAATAGAGAA----------AATATTGATC-----------------AACGCCGAAAAA-----------GGATATGAATTAAAG------------------GTGGAAGTGGACTAGG-----GGACATATACAAAGAAAAGCCCT-TGCCGAGAAGATTGGATTTTTATAGGAATAGG----TTCATATAGCAACAAACGActtcga
i caeSp111.Scaffold629  C 0 I 500
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178491 3479 - 21540570 I

a score=682.000000
s ce10.chrX               718748 14 + 17718866 GCTCG-TGATTGGAA
s caeRem4.Crem_Contig24   496797 15 -  1162296 GCTCGttgattcgaa
i caeRem4.Crem_Contig24 C 0 I 205
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178491 3479 - 21540570 I
e caeSp111.Scaffold629   3500309 500 - 33334924 I

a score=0.000000
s ce10.chrX               718762 1471 + 17718866  
e caePb3.Scfld02_62        31062  714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178491 3479 - 21540570 I
e caeSp111.Scaffold629   3500309  500 - 33334924 I
e caeRem4.Crem_Contig24   496812  205 -  1162296 I

a score=655.000000
s ce10.chrX               720233 100 + 17718866 TCTGTTACACTTTACATATTTATAT-------TGGAAACGTATGTATTTTTACTATAGCTGACATTTCAGCTTTT----------AAGTTTTAGAGTAATAAAACGATTTTTAAAAA
s caeSp111.Scaffold629   3500809 111 - 33334924 TCTGTAAAACTTT-TATATGCATATCGTTGTCTGCACATGTACTTAAATCTGCTAAAAACGCCTGTTGAGATTATTCAGAACGATAACTTTTGATGTGACAAATTGAT-----GAAA
i caeSp111.Scaffold629  I 500 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178491 3479 - 21540570 I
e caeRem4.Crem_Contig24   496812 205 -  1162296 I

a score=2453.000000
s ce10.chrX               720333 111 + 17718866 GTCTAAACTTGTTTTCTTCA----GAGTGACACATAGAAAATACACGA--------CAGGTTGGGGGCGATGGAAATT----GTAGAATAGAACAAAATCAAACGTTTCCTGAAAACTCCGTAAAAT----------
s caeRem4.Crem_Contig24   497017  96 -  1162296 GTTTGAACTTGGTGTTTataaaacggttgacacata-aaaatacacgatgacaaaacaaaaagacagaaataaaaat-----gtaag-----------------GTT--------ACTCCGTAAAAT----------
i caeRem4.Crem_Contig24 I 205 I 12
s caeSp111.Scaffold629   3500920 116 - 33334924 GTTTGAACTTGGTTTATATATCATGACTGACACATA-ATAATACACGATGACAGAGCAAATCTgtgttcaaaaagtttcttggTAGGGGGG------------CGTG--------ACTccgtaattttttctacaac
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21178491 3479 - 21540570 I

a score=6711.000000
s ce10.chrX               720444 82 + 17718866 ------CTGGGACAGCGAGAG----------------TAAGAAATTAACATGAAAATTTAACAAGATATGACATGATTGCTTACCAATAGGAGTCAGAACGCTG
s cb4.chrX              21181970 54 - 21540570 ------CTAAGATAATAAAAG----------------TGATAAaataacatgaaaa-----------ataacaagatTGCTTAGCAA-----------------
i cb4.chrX              I 3479 C 0
s caeRem4.Crem_Contig24   497125 88 -  1162296 ------CTCAGAAAGGGAAAGGTTTTCAGT-AAAACATGGTAAAATAACATGAAAATTTAACAAGATATGATGTGATTGCTTAGCAAAAACGATG---------
i caeRem4.Crem_Contig24 I 12 C 0
s caeSp111.Scaffold629   3501036 91 - 33334924 GCAAAACGGCGAAAACAATAG-TTTGAAGTAAAAATGTGGT-AAATAACATGATAAAGTAACAAGATATGATGTGATTTTTTACCAAGAGAAA-----------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        31062 714 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=56352.000000
s ce10.chrX               720526 403 + 17718866  
s cb4.chrX              21182024 374 - 21540570  
i cb4.chrX              C 0 I 538
s caeRem4.Crem_Contig24   497213 462 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 786
s caeSp111.Scaffold629   3501127 425 - 33334924  
i caeSp111.Scaffold629  C 0 I 107
s caePb3.Scfld02_62        31776 430 +   783054  
i caePb3.Scfld02_62     I 714 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=0.000000
s ce10.chrX               720929 4 + 17718866 ATAC
e caePb3.Scfld02_62        32206 0 +   783054 C
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21182398 538 - 21540570 I
e caeSp111.Scaffold629   3501552 107 - 33334924 I
e caeRem4.Crem_Contig24   497675 786 -  1162296 I

a score=833.000000
s ce10.chrX               720933 31 + 17718866 GGTTTTATGATGGGATTCAAAAAAATTAAAA
s caePb3.Scfld02_62        32206 28 +   783054 ---ttcaaaaacggtttaaaaaaaataagaa
i caePb3.Scfld02_62     C 0 I 364
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21182398 538 - 21540570 I
e caeSp111.Scaffold629   3501552 107 - 33334924 I
e caeRem4.Crem_Contig24   497675 786 -  1162296 I

a score=0.000000
s ce10.chrX               720964 1136 + 17718866  
e caePb3.Scfld02_62        32234  364 +   783054 I
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21182398  538 - 21540570 I
e caeSp111.Scaffold629   3501552  107 - 33334924 I
e caeRem4.Crem_Contig24   497675  786 -  1162296 I

a score=463.000000
s ce10.chrX               722100 44 + 17718866 TCAACCCATGCATTTCTCTCATATTTTCTAGTTTTCCATAATTA
s caePb3.Scfld02_62        32598 28 +   783054 TCAACCCATGCatgt----------tgataatttt------ttg
i caePb3.Scfld02_62     I 364 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21182398 538 - 21540570 I
e caeSp111.Scaffold629   3501552 107 - 33334924 I
e caeRem4.Crem_Contig24   497675 786 -  1162296 I

a score=273.000000
s ce10.chrX               722144 1 + 17718866 T
s caeRem4.Crem_Contig24   498461 1 -  1162296 T
i caeRem4.Crem_Contig24 I 786 C 0
s caePb3.Scfld02_62        32626 1 +   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I
e cb4.chrX              21182398 538 - 21540570 I
e caeSp111.Scaffold629   3501552 107 - 33334924 I

a score=4846.000000
s ce10.chrX               722145 26 + 17718866 TCTTACAT-TCAAAGTGTCCAGGGTAC
s cb4.chrX              21182936 26 - 21540570 TCTTACAT-TCATCATTTCTTTCACAG
i cb4.chrX              I 538 C 0
s caeRem4.Crem_Contig24   498462 26 -  1162296 TCTTACAT-TTAAGGTATCCGTTGGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3501659 26 - 33334924 TCTTacat-ttatattttctgtcGTGC
i caeSp111.Scaffold629  I 107 C 0
s caePb3.Scfld02_62        32627 26 +   783054 tcttacaTCCTGTGATTTCAAT-GTGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      187448 3184 +   258924 I

a score=72394.000000
s ce10.chrX               722171 116 + 17718866 CCAATGCTTTCGGTGGCAACGGTGGCGGCACCAACGGCAACTCGTCGACCGACGGAATTGAGTTTGACGCGTCATGCAGCAAACTTTGAGAA----------------CATTGGGACACATACTACAAACAT
s cb4.chrX              21182962 110 - 21540570 CCAATGTTTTAGCAGGCAACGGTGGCGGCACCAATGGCAACTCGTCGACCGATGGTATGGAGTGCGAT---TCATGCGGCAAACTTTG---A----------------GTTTGAGACACATACTAGAAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   498488 110 -  1162296 TCAATGTCTTCGGAGGCAATGGTGGTGGTATCAATGGCAATTCATCGACTGATGGGATGGAGTGCGAC---TCATGCAGCAGTAATTG---A----------------TTTTGAGACACATACTAGAAACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3501685 110 - 33334924 AGGGCGCTTTTGGAGGCAAAGGTGGCGGCACCAACGGCAACTCAGCTACTGTCGGAATTGAGTGCGAC---TCATGCAGcaaagtttg---a----------------ttttgagACACATACTAGAAACAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        32653 110 +   783054 CAGGAGTTTTCGGAGGCAAAGGCGGTGGCACCAAAGGTAGCTCAGCAACCGACGGGATCGTTTGTGAC---GCATGCagcaaattttg---a----------------ttttgagacaCATACTAGAAACAT
i caePb3.Scfld02_62     C 0 I 25
s caeJap4.Scaffold54      190632 126 +   258924 cCATTGGTTTTGGCGGAAGAGGAGGCGCCACAAAAGGCAAATCATTCACAGACGGAATATGTTGCAAA---TCGGGCAGTAAGGCTTG---AGAAGTGTACTAaacctttttgaaaaattaatttcaaacaa
i caeJap4.Scaffold54    I 3184 C 0

a score=-7442.000000
s ce10.chrX               722287 36 + 17718866 TGAGA----AGAC----------AGTTGTTGCACCGTTGTTGCAGTGCTC
s cb4.chrX              21183072 33 - 21540570 TGGGACTCTGgac----------agtttttattt-tttcaacca------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   498598 34 -  1162296 TGAGACAAGGGAC----------ATTGGTCACTCGCTTGGAGCA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3501795 34 - 33334924 TGAGACAAAAGACATAGAATAAAATTGTTCATTT----------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      190758 12 +   258924 -aaaacaagaaaa-------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        32763 25 +   783054 I

a score=103330.000000
s ce10.chrX               722323 188 + 17718866 AGTGTA---CTTACCGTTCTGGGAGGCACGTCGGGAACTAATGAGATCAGCTTCTTCTCCGCAGCAGCTACATTTTTCGCTTTTTCAATTTCTACCGGAGTGGGCTTGAACCTGTCAATAATCACACGATTTGTTCCTTTGATTTCGTAGCGGCAGAATGGACATGTGTTGCCACCACCATCCGAATCCTG
s cb4.chrX              21183105 173 - 21540570 aatatA---CTCACCGTCCTTGGAGGAATATCCGGAGCAATAGCAATCAGCTTCCTTTCggc---------------tactttcgcaatttcAGCTGACGTTGGCTTAAACCTGTCGATGATAACACGGTTTGTTCCTTTGATTTCATAACGGCAGAATGGACACGTATTTCCGCCACCATCCGAGTCCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   498632 173 -  1162296 AAAATA---CTCACCGTCCTCGGAGGGATATCAGGAGCTATGGTTATCAGCTTTTTCTCGGA---------------AGCTTTCTCTATTTCACCTGGAGCTGGTTTAAACCGGTCGATAATTACACGATTTGTTCCTTTGATTTCGTATCGGCAGAATGGACACGTGTTTCCACCACCATCGGAATCCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3501829 169 - 33334924 -ATTGAAACCTTACCGTTCTGGGTGGTATATCAGGTGCTAAACTGATCAGCTTGTG---------------------AGACTTTGCTGCTTCACCATGACATGGTTTGAACCTATCAATGATTACTCGATTTGTTCCTTTGATTTCATATCTGCAGAAAGGACACGTGTTTCCACCACCATCGGagtcctg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        32788 167 +   783054 AGTTGA---TTTACCGTTCTTGGGGGTACATTTGGAGCTGGGCTAGTTGATTTCTT---------------------TGATCTGCTTGTTTCTACCGGTGATGGTTTGAACCTGTCGATTATGACCCGATTTGTACCTTTGACTTCATATCTGCAGAACGGGCATGTATTCCCTCCGCCATCAGAGTCCTG
i caePb3.Scfld02_62     I 25 C 0
s caeJap4.Scaffold54      190770 182 +   258924 aaaaca---ccaacCGTTCGAGGGGGTATTTCCGGCCCTAAAAGGtccacttttttgttgtt------cacatTCTTAGATATCCGATTCTTAGATATAGATGGTTGAAATCGGTCAATAATCACTCGATTTGTACCCTTAATTTCGTACCGACAGAACGGGCACGTATGTCCGCCACCATTCGAGTcctt
i caeJap4.Scaffold54    C 0 C 0

a score=1356.000000
s ce10.chrX               722511 4 + 17718866 -AAAA
s cb4.chrX              21183278 4 - 21540570 -AAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   498805 5 -  1162296 TAACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3501998 4 - 33334924 -aaaa
i caeSp111.Scaffold629  C 0 I 166
s caePb3.Scfld02_62        32955 4 +   783054 -GAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      190952 0 +   258924 C

a score=-3589.000000
s ce10.chrX               722515 4 + 17718866 TCCA-----
s cb4.chrX              21183282 4 - 21540570 ---GTTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   498810 4 -  1162296 ---AATT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        32959 4 +   783054 -----TGCA
i caePb3.Scfld02_62     C 0 I 7
e caeJap4.Scaffold54      190952 0 +   258924 C
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=-758.000000
s ce10.chrX               722519 11 + 17718866 GACTTTTGAAA-------
s cb4.chrX              21183286 11 - 21540570 AAGTTATTAAA-------
i cb4.chrX              C 0 I 330
s caeRem4.Crem_Contig24   498814 18 -  1162296 AATTCATTAGTTTTGTTA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        32963  7 +   783054 I
e caeJap4.Scaffold54      190952  0 +   258924 C
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=-120.000000
s ce10.chrX               722530 144 + 17718866 TATTTTTCTTTGAACATGAATGCGTGAATTTAAAATTCAAACAATAGCTTAAAT-------------TTACAACTTTTTCAAGACAA--TTGATACCAGTTGTTTTC-------------------------CTAAAAGACTTGTCAAAAAAGTATCTAAACTTGTATTATTTCGTAAAAGTTG
s caeRem4.Crem_Contig24   498832 178 -  1162296 TTGTATTATTTCAATGGTAATTTGAAAGTCCGATATTTAAAATGGGGCTCAACTATAATTAGGtaagtcaaaaaattataaaaccaaatcttgttccaatttttttctgatataaaTGTGATTTTATTCCAACtattagatttttgaaacaaccattcaaa------taatttggtCAGCTTTG
i caeRem4.Crem_Contig24 C 0 I 44
e caePb3.Scfld02_62        32963   7 +   783054 I
e caeJap4.Scaffold54      190952   0 +   258924 C
e cb4.chrX              21183297 330 - 21540570 I
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=0.000000
s ce10.chrX               722674 37 + 17718866 ATAATATTTGGAAATTACAAAAATGGCAAACTGTGAA
e caePb3.Scfld02_62        32963  7 +   783054 I
e caeJap4.Scaffold54      190952  0 +   258924 C
e cb4.chrX              21183297 330 - 21540570 I
e caeSp111.Scaffold629   3502002 166 - 33334924 I
e caeRem4.Crem_Contig24   499010 44 -  1162296 I

a score=-3415.000000
s ce10.chrX               722711 395 + 17718866 CATTTGAAAAATGGGAGTGTGACTGATAAGTATGGTTCGACAATTACCAACTGATCTGTCACATTGTTTTCATTTTCTCACAA----AATTTCACTCTACTC-------------------GGGCGTGAACAAATGCTTCAAGTCT----ATGCATAGACGCCGCAACAC--------------------TTTTATTGTAACTTTTCACAAAACAATTTTCCATTAAATCGCAATGCCCAATCAGTTACACACTTTCCTTCTCTTCTCTGCGTGTCTC------AGAATCGATTAATTCTGATAATAGACAGTCGCACACAGAAGCTGAA-AACTATGTTTGTCTGCGTTTCATATTATTTAGTGTGCCTGCTCATCTAATCATTGTTCTTTTCAATATTTGTTACCCAATTTCATTAACTTGTTTTTTATCTATTAGCAAGCCCAAGC
s caeRem4.Crem_Contig24   499054 379 -  1162296 CATCTG--------GATTGTGTTTGGTCAG-----------AATTATTActttatcag--aattttttttcaatagataGAAATATAAATATCATTTGACCCAAGTAAAAGATACATTTCTGAGAAAGAATAATTGATACATTTCTGAGAAAGAATAATTATCGAAAAACACAGCACGGGTTAAGTGtcatttgatgaaaactttttgacgAATA--TGACTGCGAAATATCATTTCAAAATCGTGTAGGTGGTTTCCTGTTTTCTCTAACACCTATCGTTTGGAtagttttttacttttgaaatttg-----------------ctgAATAACTTTCTTTTTGGGTATCCCA-ACCATATCATGTA--TGTTGATCAAGA----ATTTATTTCAAAGTT------CCAGTTCCGTTTGCATCATGCTT--------------CCA---
i caeRem4.Crem_Contig24 I 44 C 0
e caePb3.Scfld02_62        32963   7 +   783054 I
e caeJap4.Scaffold54      190952   0 +   258924 C
e cb4.chrX              21183297 330 - 21540570 I
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=356.000000
s ce10.chrX               723106 16 + 17718866 AAATTTTAAAAATTTT
s caeRem4.Crem_Contig24   499433  2 -  1162296 --------------TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      190952 16 +   258924 aatttttcaaaatgtt
i caeJap4.Scaffold54    C 0 I 4
e caePb3.Scfld02_62        32963  7 +   783054 I
e cb4.chrX              21183297 330 - 21540570 I
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=-2516.000000
s ce10.chrX               723122 19 + 17718866 GTAAAAAGA-AAATAGTCGT
s caeRem4.Crem_Contig24   499435 16 -  1162296 GTCACatgagaaat----gt
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62        32970 10 +   783054 -----GTGA-AAAT----GT
i caePb3.Scfld02_62     I 7 I 9
s caeJap4.Scaffold54      190972 17 +   258924 -aaaaaaaagaaataatt--
i caeJap4.Scaffold54    I 4 C 0
e cb4.chrX              21183297 330 - 21540570 I
e caeSp111.Scaffold629   3502002 166 - 33334924 I

a score=-2251.000000
s ce10.chrX               723141 16 + 17718866 TGTTTTTTCCAGAAAA
s caeRem4.Crem_Contig24   499452 12 -  1162296 ttttttcc----tcaa
i caeRem4.Crem_Contig24 I 1 I 13
s caeSp111.Scaffold629   3502168 16 - 33334924 TGTTTGACCAAATCAA
i caeSp111.Scaffold629  I 166 C 0
s caePb3.Scfld02_62        32989  9 +   783054 TGCTT-------TCGA
i caePb3.Scfld02_62     I 9 I 1
s caeJap4.Scaffold54      190989  2 +   258924 --------------aa
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21183297 330 - 21540570 I

a score=212346.000000
s ce10.chrX               723157 234 + 17718866 CTAACCTGCCAGTTAGCCAAACATTTTGCGCAGAGCAAATGTCCACATGGCTCAATTTTGATGTTCTTCTCGTTATCGTCACAAATTTTGCACAACTCGAATGTTGTGCCCATCTCACAATACAACTCGTATTGTTCACTGGTCACTTGCACTCTGTCCGCTTGTGGCACATCCATCAATTTGGATAAGTTAATATCTTGATCTCTACCGTTCGGGTAAATATAACTGTAAGTA
s cb4.chrX              21183627 227 - 21540570 CTCACCTGCCAATTGCCCAAACATTTTGAGCATAACAAATGTCCGCAC-GctcaattttgatgtttttctcGTTATCGTCGCAGATTTTGCAAAGCTCGAATGTGGTTCCCATCTCGCAGTAAAGTTCGTATTGCTCACTCGTGACTTGGACTCGGTCCGCTTGTGGTACATCCATCAATTTTGACAAGTTGATGTCTTGCTCACGACCGTTTGGATAGATGTAACTG------
i cb4.chrX              I 330 C 0
s caeRem4.Crem_Contig24   499477 232 -  1162296 CTCACCTGCCAGTTGGCCAAACACTTGGCACATAACAAATGTCCGCACGGCtcgattttgatatttttctcattgtcATCACAGATTTTACACAGCTCAAATGTGGTTCCCATTTCACAATAAAGTTCGTACTGCTCACTGGTGACTTGCACTCGATCCGCTTGTGGTACATCCATTAATTTCGATAGATTGATGTCTTGATCACGACCATTCGGATAAATATAGCTGAAAT--
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold629   3502184 232 - 33334924 CGAACCTGCCAATTCGCAAGACACTTTGCACAGAGAAGATGTCCACACGGCTCAATTTTGATGTTCTTTTCGTTATCGTCACAAATTTTGCACAGCTCGAATGTGGTTCCCATTTCACAATACAACTCGTACTGTTCGCTGGTCACCTGTACTCGGTCCGCTTGTGGTACATCCATCAGTTTTGATAAATTGATGTCTTGGTCTCGACCATTTGGATAGATGTAGCTGAAGG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        32999 234 +   783054 CTTACCTGCCAATTTGCAAGACATTTCCCGCACAGAAGATGTCCACATGGCTCTATTTTGATATTCTTCTCATTATCGTCACATATTTTGCACAATTCAAATGTGGTCCCCATTTGGCAGTATAACTCATACTGTTCGCTTGTTACTTGTACTCTGTCGGCTTGGGGAACCTCCATTAGCTTGGATAAATTAATATCCTGGTCGCGGCCATTGGGATaaatatagctgaaaaca
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold54      190991 234 +   258924 CATACCTGCCAATTTGTCAAGCATTTGGAACAAAGAAGATGCCCGCATGGTTCAATTTTAATGTTCTTTTCATTATCATCACAAATTTTACACAATTCAAAAGTGGTCCCCATCTCACAATACAACTCGTATTGCTCACACGTTACTTGAACTCGGTCCGCTTGTGGCAAATCCATTAGTATCGATAAATTGATGTCTTTATCGCGCCCGTTCGGATAGATGTAGCTAAAAATA
i caeJap4.Scaffold54    C 0 I 145

a score=-12707.000000
s ce10.chrX               723391 27 + 17718866 TTTGATTTTTATTGTAGAACA---AGTGAA---------------------
s cb4.chrX              21183854  7 - 21540570 -----------------------TAACTAA---------------------
i cb4.chrX              C 0 I 572
s caeRem4.Crem_Contig24   499709 17 -  1162296 -------------AGGGAATATATATTTGA---------------------
i caeRem4.Crem_Contig24 C 0 I 106
s caeSp111.Scaffold629   3502416 17 - 33334924 -------------CCAGAGTTTATATTAAA---------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        33233 25 +   783054 tttttgtgataatccagag-----aataaa---------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      191370 51 +   258924 tttaaattttatttccaaaCGTTCCGTCAAACACACCgtggaaaacggcta
i caeJap4.Scaffold54    I 145 C 0

a score=-1649.000000
s ce10.chrX               723418 6 + 17718866 TCCATC-
s caeSp111.Scaffold629   3502433 3 - 33334924 ---AGC-
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_62        33258 3 +   783054 ---aac-
i caePb3.Scfld02_62     C 0 I 6
s caeJap4.Scaffold54      191421 6 +   258924 -ttagcc
i caeJap4.Scaffold54    C 0 I 12
e cb4.chrX              21183861 572 - 21540570 I
e caeRem4.Crem_Contig24   499726 106 -  1162296 I

a score=173444.000000
s ce10.chrX               723424 178 + 17718866 AACTTACAATCCTTCTTTATGGCCTTCATGTAGTGCTTGAATCAAACTTTTATTCTGTGGTATTGTCTGATAAATCTTTCCATCCGGAGCTACGTATCCTATTGCCCATTGTCCAGGACGTGTGCATGATAACCGGAAGATGTAGCT--------TCCAGGTT--TTTTCGTTAATTTTTCTAACCGT
s cb4.chrX              21184433 178 - 21540570 AACTTACAATCCTTCCTTATGACCCTCATGAAGTGCTTGGATTAAACTTTTATTCTGTGGAATCGTTTGGTATATTTTCCCATCCGGTGCTACATAACCAATTGCCCACTGTCCGGGTCGTGTACACGATAACCGGAAAATATAGCT--------TCCTGGTT--TTCTTGTCAGCTTTTCTAGTCGC
i cb4.chrX              I 572 C 0
s caeRem4.Crem_Contig24   499832 178 -  1162296 AACTTACAATCCTTCTTTATGACCTTCGTGAAGTGCTTGAATCAAGCTTTTGTTCTGCGGAATTGTTTGATATATCTTCCCATCAGGTGCCACGTAGCCGATTGCCCATTGACCGGGCCGAGTACATGATAACCGGAAGATGTAGCT--------TCCCGGTT--TCTTTGTGAGCTTTTCTAGTCGT
i caeRem4.Crem_Contig24 I 106 C 0
s caeSp111.Scaffold629   3502448 178 - 33334924 AACTTACAATCCTTCTTTATGCCCTTCATGAAGCGCTTGAATCAAGCTTTTGTTTTGTGGTATAGTCTGATAGATCTTGCCATCAGGAGCCACATATCCAATTGCCCATTGACCTGGCCGAGTACATGATAATCGGAAGATGTAACT--------ACCAGGCT--TCTTTGTCAATTTCTCCAAACGC
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_62        33267 178 +   783054 gaCATACAATCCTTCTTTGTGGCCTTCGTGAAGTGCTTGaatcaaacttttgttttgcGGAATAGTTTGGTAGATTTTGCCATCGGGTGCCACGTATCCAATTGCCCATTGACCAGGTCGTGTACAAGACAATCGGAAAATGTAGCT--------TCcaggtt--tttttgttaacttcTCAAGTCGC
i caePb3.Scfld02_62     I 6 C 0
s caeJap4.Scaffold54      191439 188 +   258924 aacttacaatcCTTCTTTATGACCTTCATGAAGTGCTTGAATCAAACTCTTGTTCTGGGGAATGGTCTGATAAATTTTACCATCCGGCGCCACATACCCGATTGCCCATTGACCCGGTCGTGTGCATGATAATCGGAAAATGTagctgaaagaaaaacaggttcatttttcttttcttttccaattgt
i caeJap4.Scaffold54    I 12 I 1956

a score=101358.000000
s ce10.chrX               723602 104 + 17718866 TTTTTGACCTCATCGTATGTGAGAAATGCACAGTATCCGGGATGGGCGGTGGTGAGTGTTTGCCAATTTTTGATCAGTGTTTTGAAAGGGTAGAATAACCTGAA
s cb4.chrX              21184611 104 - 21540570 TTCTTGACTTCATCGTAGGTCAAAAACGCGCAGTATCCGGGGTGAGCGGAGGTAAGAGTTTGCCAGTTCTTGATTAATGTTTTGAATGGATAGAACAATCTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   500010 104 -  1162296 TTTTTGACTTCGTCGTAAGTCAAAAATGCGCAGTATCCTGGATGAGCAGTTGTCAGTGTTTGCCAATTCTTGATCAACGTTTTGAAAGGGTAGAATAACCTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3502626 104 - 33334924 TTTTTGACCTCGTCATAAGTTAAAAACGCACAATATCCGGGATGAGCCGTCGTCAGTGTCTGCCAGTTCTTGATCAGAGTTTTGAAGGGATAGAATAACCTTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        33445 104 +   783054 TTTTTAACTTCATCATATGTCAAAAATGCACAGTATCCAGGATGAGCAGTCGTCAATGTTTGCCAGTTTTTGATCAAAGTTTTGAACGGGTAGAATAGCCTGAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      193583 104 +   258924 TTCTTCACCTCATCATACGTCAAGAAAGCACAGTACCCAGGATGACCCGTTGTCAATGTTTGCCagttttttatcaaatttttaaatggatAGAATAGCctgaa
i caeJap4.Scaffold54    I 1956 C 0

a score=91.000000
s ce10.chrX               723706 1 + 17718866 A
s caeJap4.Scaffold54      193687 1 +   258924 a
i caeJap4.Scaffold54    C 0 I 14
e caePb3.Scfld02_62        33549 0 +   783054 C
e cb4.chrX              21184715 0 - 21540570 C
e caeSp111.Scaffold629   3502730 0 - 33334924 C
e caeRem4.Crem_Contig24   500114 0 -  1162296 C

a score=-27945.000000
s ce10.chrX               723707 169 + 17718866 TTTAGCATTTTAACTTTTTCATATTTTAACAAGTTTACTTATTCAGTATTATCATATTTAGAACTATAAAAATGATGGACTGTAAAGTTTTA-----------------------------TGAAAGCATTTTGGTCAGTGCAACTAAAAATGTTGAGAGCAGTGCTAATTTTAAAAATGATTAGTCAATGAAAACGT
s caeRem4.Crem_Contig24   500114  70 -  1162296 ---------ATGTATTTATTAAGCGTTGGTCAAGCAT------------------------GAC-----AACTGTCG---------GTATCA-------------------------------------------------------------------------------CTATAACCGTACCTGG--TGAAAACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3502730  45 - 33334924 ------ATTATCAAATTGC---------ATGAATCAA-------------------------------------------------TTTCCAA------------------------------------------------------------------------------TCAAAAGTAATTTTTG-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        33549 160 +   783054 ------AACAACGATTTGTTCGATCTTGATGattgaagatgtt-------------tttgagAC-----AACCgctg-------agttttcaaaatgaagtgatGCAGTTTTCTTATTTGATAATTGCATCAT-ATCGTACGAACGATTGattgtgaa---atttttagtgttatatatgttttttg-atggaaac--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      193688  14 +   258924 I
e cb4.chrX              21184715   0 - 21540570 C

a score=-2020.000000
s ce10.chrX               723876 54 + 17718866 AATAATGTTACACTGAAAAAACTATTTCCACCTTTCTTGTTAGAATTTTAATTT
s caeSp111.Scaffold629   3502775 16 - 33334924 -----------------CAAGCTACTTC--------------TAATT-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        33709 34 +   783054 aaTAA----------ATCAAATCGTTTC----------GTATGAATtttgagtt
i caePb3.Scfld02_62     C 0 I 161
e caeJap4.Scaffold54      193688 14 +   258924 I
e cb4.chrX              21184715  0 - 21540570 C
e caeRem4.Crem_Contig24   500184  0 -  1162296 C

a score=-150.000000
s ce10.chrX               723930 27 + 17718866 ATCGGCAAAAGACTTGGTTCCTACATG
s caeSp111.Scaffold629   3502791  7 - 33334924 --------------------ATACATG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        33743 161 +   783054 I
e caeJap4.Scaffold54      193688 14 +   258924 I
e cb4.chrX              21184715  0 - 21540570 C
e caeRem4.Crem_Contig24   500184  0 -  1162296 C

a score=0.000000
s ce10.chrX               723957 87 + 17718866 CTTGCGGTTTGGTCAGAGCTGGCGGCCAATCTGGTCAGTGCTGGCGACCAATTTGGTCAGTGCTCGCGGCCAATTTGGTCAGTGCTG
e caePb3.Scfld02_62        33743 161 +   783054 I
e caeJap4.Scaffold54      193688 14 +   258924 I
e cb4.chrX              21184715  0 - 21540570 C
e caeSp111.Scaffold629   3502798  0 - 33334924 C
e caeRem4.Crem_Contig24   500184  0 -  1162296 C

a score=545.000000
s ce10.chrX               724044 25 + 17718866 ATAACCAATTTGGTCAGTGCCGAAC
s cb4.chrX              21184715 24 - 21540570 ATAATTATTTTGCTTAATGCAG-AT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        33743 161 +   783054 I
e caeJap4.Scaffold54      193688 14 +   258924 I
e caeSp111.Scaffold629   3502798  0 - 33334924 C
e caeRem4.Crem_Contig24   500184  0 -  1162296 C

a score=-3530.000000
s ce10.chrX               724069 17 + 17718866 ----GCAAGAAAATAAACTCA
s cb4.chrX              21184739 13 - 21540570 ----GTAACTCATTATA----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62        33904 13 +   783054 ----gcAAAAGAG--TACT--
i caePb3.Scfld02_62     I 161 C 0
s caeJap4.Scaffold54      193702 17 +   258924 GTAAGCACGTGGATCGA----
i caeJap4.Scaffold54    I 14 C 0
e caeSp111.Scaffold629   3502798  0 - 33334924 C
e caeRem4.Crem_Contig24   500184  0 -  1162296 C

a score=69545.000000
s ce10.chrX               724086 204 + 17718866 CGCTTACCTTGTAAACACATCAAACTCAAAATTCGAAATAAAATCATCTCCGCTCAAGTCTATCGTAGCTTTTAATTCGGCTGCTTCCATTTTTCCTATCGTTGATCCATGGTGCTTTTCTAATGCAGTAAAAAATGTTGACCAGGGTACAATGTTTCTGGAAA-AC---------------------------------TCATA------------------------------------------------------------------------------------------------------------------AATAATTTTTTTT---GAAAATTAAACGCAAAAAAA
s cb4.chrX              21184752 196 - 21540570 ---TTACCTGGTGAAAACGTCAAATTCAAAGTTAGAAATGAAATCGTCTCCACTCAAATCTATCGTCGATTTGAGCTCTGCCGCTTCCATTTTACCTAATACTGCTCCGTGGTGTTTTTCCAACGCAATGAGAAACGCTGGCCATGGCacaatgtttctgaaaa-acattt-------------------------tgaatcaaa------------------------------------------------------------------------------------------------------------------ttgAAGTCCTctcacagaaa----------------
i cb4.chrX              C 0 I 1322
s caeRem4.Crem_Contig24   500184 174 -  1162296 --------------------CAAACTCAAAGTTCGAAATGTAATCATCTCCGCTCAAATCAATCGTAGCTTTCAACGCCGCTGATTCCATGTTTCCTATCGGAGCACCATGATACTTCTCTAACGCAGCCAAGAACGTTGGCCAAGGTACCATATTTCTGAAAGTACA----------------------------TGAATTATT------------------------------------------------------------------------------------------------------------------ACAAATTCATTGT---GATA----------------
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3502798 194 - 33334924 TACACACCTTGTAAACACatcaaattcaaagtttgaaatgTGGTCATCCCCACTCAAATCTATCGTCGATTTTAATTCAGCCGATTCCATTTTGCCAATTGGTCCACCATGAAACTTTTCCAGCGCAGTCAAAAACTGAGGCCATGGTACGATATTTCTGCAAA-ACAACG-------------------------TG--TTATA------------------------------------------------------------------------------------------------------------------TCAAAACCTGTCG---CATA----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        33917 330 +   783054 TGCTCACCTTGTGAAAACGTCGaattcaaaactggaaatgtAGTCGTCACCACTCAAATCTATAGTTGCTTTCAGCTCAGCCGCTTCCATTTTCCCAAC---GCCACCATGATCCTTCTCTAATGCCGTCAAGAATTGTGTCCACGGTACCAAGTTGCTGTAAA-ACAATAGTTTTAATATGGTTGTCCTACGTTTCG--TTATACTATTCTTCTCCAATATAACAGAAAGATCTCATATTActaatgtttttatttcagcttGGTTATGAAAATACATTGGGTATGTTGTTTTCCCCTATAATTTTAAAGCAATACTTTTAGAttcatttg---aata----------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      193719 188 +   258924 CCTTTACCGAGTAAACACATCAAACTCAAAACTCGAAATGTAATCATCTGCGCTCAAGTCGATAGTAGCTTTCAGATCACCAGCTTGCAGTTTTTCTATCGGCATCCCGTGATATTTTTCAATTGCACTTAGAAACGTTGGCCATGGAACAATGTTTCTAAAGA-GAACAA-------------------------TGA-TTATA------------------------------------------------------------------------------------------------------------------AGTAAAACAA--------------------------
i caeJap4.Scaffold54    C 0 C 0

a score=7087.000000
s ce10.chrX               724290 11 + 17718866 ------------------ACTTACTTTTT
s cb4.chrX              21186270 11 - 21540570 ------------------actcacttttt
i cb4.chrX              I 1322 C 0
s caeRem4.Crem_Contig24   500361 11 -  1162296 ------------------ACTTACTTCTT
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3502992 11 - 33334924 ------------------GCTCACTTTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        34247 11 +   783054 ------------------attcagttttt
i caePb3.Scfld02_62     C 0 I 195
s caeJap4.Scaffold54      193907 29 +   258924 ATTCTGCTGTATTCATGTATgtacttttt
i caeJap4.Scaffold54    C 0 C 0

a score=162732.000000
s ce10.chrX               724301 195 + 17718866 TGTAAAATGATGACTCCAAAAGCTTTCGGCTTCCTTCTTTGTCATCCGAAACCGGTCTTCAATATAGATACCTTCCGGAAATAATGCTTTAATCTCGAAAAGCATATGTGAAAATGTTAGTGACATTTTCGTAAGCTTCCGTCGTTCTTCAGACTGGTCATTGTAGATAGCTGACGTCTTGAACAGTTTGATGAT
s cb4.chrX              21186281 195 - 21540570 caaaaaatgctgacTCCAAAAACAGTCGGCCTCTTTCTTAGTCATACGAAACCGGTCTTCAATGTATTGACCTTCCGGAAACAGAGCTTTTATTTCGAAGAGCATATGAGAAAACGTAAGCGACATCTTCGTCAATTTCCTTCGTTCATCAGATTGGTCATTGTATATTCCCGATGTTTTGAATAGCTTGATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   500372 195 -  1162296 CAGGAAATGATGAGTCCAAAAGCTGTCTGCTTCTTTTTTAGTCATCCGAAACCTATCTTCAATGTAAAGACCTTCAGGGAACATAGCTTTGATCTCAAACAGCATGTGTGAGAAAGTCAGCGACATCATCGTTAACTTCCTTCGCTCTTCTGACTGGTCATTGTAGATCGAGGAGGTCTTGAAGAGTTTTATGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3503003 195 - 33334924 CGTGAAATGGTGGCTCCAAAAGCTTTCCGCTTCTTTTTTAGTCATTCGAAACCTGTCTTCAATGTATATTCCTTCAGGAAACATTGCCTTAATCTCAAACAACATATGTGAGAACGTCAGTGACATCTTGGTAAGTTTCCGTCGCTCTTCTGACTGATCATTGtaaattgaagaagttttgaatagCTTGACAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        34453 195 +   783054 TGGGAAGTTGTGGCTCCAGAAACTTTCCGCTTCTTTTTTCGTCATACGAAATTTGCCTTCGATGTAAACTCCTTCGGGGAACATTGCCTTTATCTCAAACAGCATGTGTGAGAATGTCAATGACATTTTTGTGAGCTTCCTCCTCTCTTCCGACTGATCGTTGTAAATTGAGGATGATTTGAAAAGCTTGATGAT
i caePb3.Scfld02_62     I 195 C 0
s caeJap4.Scaffold54      193936 195 +   258924 gggaaaatgaTGACTCCAAAAACTCTCAGCCTCTTTTTTCGTTATCCTGAACTTGCTTTCGACGTACAGTCCATCAGGAAAAAGTGCCTTCATTTCAAAAAGCATGTGCGAAAATGTCAGCGACATTTTTGTTAACTTCCTCCTCTCGTCCGATTGCTCGTTGTAAATTGCTGATGTTTTGAAAAGcttcaaaat
i caeJap4.Scaffold54    C 0 I 1667

a score=92108.000000
s ce10.chrX               724496 99 + 17718866 CTCTTTGCACTTGTTGATCATACTCTCCAGAAAGATTTTCAAGTAGTCGTTGTCTTGGAGTATGTCATTGTTTTGTGTGAATATCAGCATTAACTAAAA
s cb4.chrX              21186476 99 - 21540570 TTCTTTGCATTTGTTGATCAAACTTTCCAGGAACAGTCTCAGATACTCGTTGTCTTGGAGTATGTCATTGTTGTGGGTGAAGATTAGCattaactgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   500567 99 -  1162296 CTCTTTGCACTTGTTGATCAAACTTTCTAAGAAAATCTTCAGGTACTCGTTGTCTTGAAGAATGTCATTGTTTTGGGTGAATATCAGcattaactgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3503198 99 - 33334924 CTCTTTGCATTTATTTATCAAACTTTCGAGGAAAATTTTCATGTACTCATTGTCTTGAAGTATGTCATTGTTGTGAGTGAATATCAGCATTAGCTAAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        34648 99 +   783054 CTCTTTGCATTTGCTGATTAAgctttcgagaaaaatcttcaaatacTCATTGTCTTCGAGTATGTCATTGTTGTGGGTGAATATCAACATAAGCTGAAA
i caePb3.Scfld02_62     C 0 I 33
s caeJap4.Scaffold54      195798 99 +   258924 CTCTTTGCATTTTGTGACGAGATTCGCAAGTAAAATCTTCACATAATCATTTTCCTGTAGAATTTCATTGTTTTCCGTGAAAATCAGCATTAACTGAAA
i caeJap4.Scaffold54    I 1667 I 33

a score=-805.000000
s ce10.chrX               724595 2 + 17718866 GT-
s cb4.chrX              21186575 2 - 21540570 at-
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig24   500666 2 -  1162296 at-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3503297 2 - 33334924 -TT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeJap4.Scaffold54      195897 33 +   258924 I

a score=-869.000000
s ce10.chrX               724597 15 + 17718866 GTTTGATTTATTTTT--
s caeRem4.Crem_Contig24   500668 15 -  1162296 aatttttttgtattt--
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold629   3503299 16 - 33334924 AATTGATATG-ATTGAT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeJap4.Scaffold54      195897 33 +   258924 I
e cb4.chrX              21186577 23 - 21540570 I

a score=-30.000000
s ce10.chrX               724612 22 + 17718866 GGGTTTTAGTCTGAACTTTTTT
s caeSp111.Scaffold629   3503315 17 - 33334924 GAG---AAGTC--GACTATTTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeJap4.Scaffold54      195897 33 +   258924 I
e cb4.chrX              21186577 23 - 21540570 I
e caeRem4.Crem_Contig24   500683 15 -  1162296 I

a score=0.000000
s ce10.chrX               724634 482 + 17718866 GTTGTTTTGAGTTGTTGTTTCAATTACCTGGGCAATTTGGCAAATCTTCTTATCAAATGCAATTTTTGCAATTGAAAGTTAATTAAAATTAACATAAAAACATCGGAACAAGCCTGCTGTTTTTCGGAAAAAACTGCGGTTACAATTGATTCAACAAATGATTGTCTTCAACAAAAATACTTTTTCAACAAAAAAAGTTTCAACAAAAATAACTGTTTTTCAAATTAATCAATCATTTTCTTAAATTTCTAAATTCGACTTTTATATTAAAAGTTTGATGATCATATCAAAAAAAAATAAAACGTTGTGTAGATTTTTAGAAAAACTTGAAGAATTACAGTAACTGGATATGGTTTTTGAAATTTCAAAAACGAAGCAGCCCCGATTGGACTTCAGCAATAATAAATGGAAACCCACATACATATTTTAGAAAGTGCTTATCACGATAATACCGCTTAGTTTTGTAGCAATCCTGTTTTCAA
e caePb3.Scfld02_62        34747  33 +   783054 I
e caeJap4.Scaffold54      195897  33 +   258924 I
e cb4.chrX              21186577  23 - 21540570 I
e caeSp111.Scaffold629   3503332   0 - 33334924 C
e caeRem4.Crem_Contig24   500683  15 -  1162296 I

a score=350.000000
s ce10.chrX               725116 6 + 17718866 AGAACT
s caeRem4.Crem_Contig24   500698 6 -  1162296 agaaat
i caeRem4.Crem_Contig24 I 15 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeJap4.Scaffold54      195897 33 +   258924 I
e cb4.chrX              21186577 23 - 21540570 I
e caeSp111.Scaffold629   3503332 0 - 33334924 C

a score=613.000000
s ce10.chrX               725122 4 + 17718866 ACGA
s cb4.chrX              21186600 4 - 21540570 ATAA
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig24   500704 4 -  1162296 atga
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeJap4.Scaffold54      195897 33 +   258924 I
e caeSp111.Scaffold629   3503332 0 - 33334924 C

a score=-2337.000000
s ce10.chrX               725126 4 + 17718866 AAAA-
s cb4.chrX              21186604 4 - 21540570 ATAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   500708 3 -  1162296 a-at-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      195930 4 +   258924 -aata
i caeJap4.Scaffold54    I 33 C 0
e caePb3.Scfld02_62        34747 33 +   783054 I
e caeSp111.Scaffold629   3503332 0 - 33334924 C

a score=137034.000000
s ce10.chrX               725130 141 + 17718866 AACTCACATGCGTATAAGTATCAGGTAGAATGTCCAAAATGAAAGGCGGCGAATTTTTCAAATTCAGTCTTGGGCTATGACAACTCTTCACTACTTGATCCATAAACTTGCATGCTTTGAGCAAAAATCGACGATCCTAAA
s cb4.chrX              21186608 141 - 21540570 AACTCACATGCGTATAGGTGTCCGGCAATATATCCAGAATAAAAGGCGGcgagtttttcaagtttaatcTTGGGCTATGACAACTTTTTACCACTTGATCCATAAATTTACATGCTTTGAGAAGAAACCTTCGGTCCTGCA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   500711 141 -  1162296 aacTTACATGAGTGTAAGTATCCGGTAATATATCTAGAATGAACGGCGGggaattcttcaaattcagCCTCGGGCTGTGACAACTTTTCACTACTTGATCCATAAATTTGCATGCTTTAAGCAAAAACCGACGATCCTGAA
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3503332 141 - 33334924 AACTTACATGCGTATAGGTGTCGGGTAGAATGTCTAAGATGAAAGGCggtgaatttttcaaattcaatctTGGGCTATGACAGCTTTTGACTACTTGATCCATGAATTTACACGCTTTGAGCAAGAATCGTCgatcctgaa
i caeSp111.Scaffold629  C 0 I 481
s caePb3.Scfld02_62        34780 141 +   783054 aacTCACATGTGTATAAGTATCAGGTAGTATATCTAAAATGAATGGCGgagaattcttcaaattgagTCGTGGACAATGGCAGCTCTTCACAACTTGATCCATGAACTTACAAGCTTTGAGCAGAAATCGACGATCCTGAA
i caePb3.Scfld02_62     I 33 I 1043
s caeJap4.Scaffold54      195934 141 +   258924 gaCTCACATGTGTGTAGATGTCGGGCAAAATGTCCAAAATAAACGGCGGAGAGTTCTTCAGATTTAACCTCGGGCTGTGACAGTTTTTCACAACTTGGTCCATCAACTTGCACGCCTTTAGAAGGAAGCGGCGGTCCTAAA
i caeJap4.Scaffold54    C 0 C 0

a score=0.000000
s ce10.chrX               725271 4 + 17718866 AAAA
e caePb3.Scfld02_62        34921 1043 +   783054 I
e caeJap4.Scaffold54      196075 0 +   258924 C
e cb4.chrX              21186749 1 - 21540570 I
e caeSp111.Scaffold629   3503473 481 - 33334924 I
e caeRem4.Crem_Contig24   500852 1 -  1162296 I

a score=-2400.000000
s ce10.chrX               725275 23 + 17718866 GCTACTGTATATTTACGATTTTC
s cb4.chrX              21186750 11 - 21540570 ---ATCGTTTGCTC---------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   3503954 14 - 33334924 GCAAGCGTCTATTA---------
i caeSp111.Scaffold629  I 481 C 0
s caeJap4.Scaffold54      196075 22 +   258924 -CCGTTTTGTTTTTGTGGCTTTC
i caeJap4.Scaffold54    C 0 I 31
e caePb3.Scfld02_62        34921 1043 +   783054 I
e caeRem4.Crem_Contig24   500852  1 -  1162296 I

a score=-11345.000000
s ce10.chrX               725298 390 + 17718866 CGTTTTTTTTTTACTTTTGAAACTTAACGCTTCCGGATTTTTTTTTGTCTTACTGTATAT---------TAGCAAGAAAATGCCTAAAGACGGGATTATTAATTTTTTGTTCGGAGTATAAGCTACAAGTGTGAAGCAAAATTAAAGAAGGAAATGCTGGTTGCAATGAAGCATTGTGTGCAATTGTTAATTTATAATAAAAAGCTGAACTCAAAAGCCAGAGATTTGATAACACAAAAA--TTCACAATACCTCTTCACTGCAGAAACCGGGCATCTCCGAAGCTGATGGGATTTCGAATAGCTAAAA-------------------GACACGATTTCCTATCTAGCTTTTAAGAGGAAATTGATAAAAACAAAGAAAGGGGAAATGTTGTCTCATT----------CGTCATCTT------GGGAA-------CAAAAAAA
s cb4.chrX              21186761 274 - 21540570 ---ACATTTTTTACGATCTAA--------------------------------CAAAATT---------TAGTAGCAAACGCGC-----AGTGAAGCGGTTATTCGTCGCT-AGCATTGAA----------gcaaataaaa-----------------------------------tgttcaact----------cAATTAGGGGTTAcgtcaaaaaacaaaattgtggGATTTAGAAAA--CTCGTAATACCTCTTCACAGCCAAAACCAGGCATTTCCAAAGCTGGCGGGATTTCGAATAGCTAAAA------------------TGAGGGAAATTTGTCAC--AGC---------------GCTGGAAC----AAATGGAAAATGTGGCCTCATC-----------GCCAGCTTCCCAT-AGAAg-----------aaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   500853 303 -  1162296 ----------TAACATTGTAA--------------------------------CATAAATATGCGAGCATAGTGGAAAGCGT-----------AAGCATTAGTTTTT------GCATAGTA----------GAGAGTAAAAGCGAAA----------------------------TTATACAACTGA-------GAAGGCAcaggttttttc--aaaactaaagtttggtgattcgaaaatttttttgataccTCTTCGCTGCAGAAACCAGGCATCTCCGAAACAGATGGAACTTCGAATAGCTAAAA-------------------GTGACACATTTTTAAT--GTcttttatagaattttttcTGCAac-cggaaatgaaaaa-atgggctgatc----------ttttctctttgtAG-AGAAGACGACTAAAGAAAAA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3503968 356 - 33334924 -GGGTATTTACGGTACCTTAATTT----ATCTCTaggtatttt----------caaaaat---------tggcaGTAACTTCACT---TAAGAAAGCATTagttg--------aaatagaa---ataagAGGCCAGGAAAACTCAA------------------------------TAAGCAACTCAAAA--AGGCATACATAGGTTTGGG---AACAAAAAAGGTTAGAATTGGGACTTGCTCTGGTATACCTCTTCGCTGCAAAAACCTGGCATCTCCGAAGCGGACGGTATTTCGAATAGCTAAAAAGTTGCGGATGGACACGATGTGAGGATTTCTCATC--ACTTTTTATA--------CCGgaaac-aagaaacaaaaca---aaaccaatctccatttttttttcctttttccatcaTGAGAAAAACATAAAGAAT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        34921 1043 +   783054 I
e caeJap4.Scaffold54      196097  31 +   258924 I

a score=5611.000000
s ce10.chrX               725688 131 + 17718866 AACC--------------------ATGAA-------AAACTTACTGAAACTGTGCTGGGAACAGCTCTCGGACTGAGTGTCAACGCTTCCG---TCGAGTTGTTTGTGCTGGGAACAAATCGCTGAA--------------ATTGTTCCA-TTCTGATTCTGTTTGGAGAGCGAGA
s cb4.chrX              21187035 156 - 21540570 aacc--ggaaactggaaatagaaagcaaa-aacaaaaaacttacaGAAACAATGCTCGGCATTGCTCTTGGATTTAACGTCAATGTCTCAG---GCGCGGGAGTTGTGTTTGGAACGAAGCGCTGGAAGTAAG-------TATTGACTCG-CATGAATATTTT------AGCTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   501156 160 -  1162296 CACctgggaaaatgaaaaaaaaatgtggatAAAGGAAAACTTACAGAAACGATGGTCGGAACAGCTCTCGGATTGAGTGTTAGGGTCTCTGTGTTGGTGGTGGGGGTGTTTGGTACGAAACGCTgtaaataa---------attgttttg-cGGGTGTACAGC------AATTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3504324 115 - 33334924 TTCc--cgaaatttccaaaaatagggAAG-------AAACTCACGGTAACAGCACTCGGAACAGCTCTCGGGGTCAACGTCAGCGTCTCAGTAGGTGTTGTGACTGTATTCGGAACGAAACGAC----------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      196128 132 +   258924 ---------------------------aacaaaaaaaaactcactgaaGTGGTATTTGGAACAGCCCTTGGAGTGACGACCAATATTTCTG---TAGCGTGTGATGTGTTTGAAACGAAtctctgaaaaagaaaaaaacttgcTGACTCATCGAGTATGTAG--------------
i caeJap4.Scaffold54    I 31 C 0
e caePb3.Scfld02_62        34921 1043 +   783054 I

a score=59701.000000
s ce10.chrX               725819 144 + 17718866 AA--CTTACCGCATTATTG------CCTG---TGCCATTGACAAACCGATGTATCCGGTGAAAAATTGTGTTTATTGAACCCATTCCCGGTGA-----AACGG-------TGATATGATGTGAAG-TCCAGTG-GCA-ATTAATTAGGATGTAA----TGATCATAGCTGCAAA
s cb4.chrX              21187191 147 - 21540570 GATGCTCACCACATTGTTT------C------CGCCGTTGACAAATCGGTGTATCcgatgaaaaattgtattaatGGAGCCCATTTTAGATGG------ATAAATTAATGGAATACAGTTTAAAG-CTG--CG-ATA-TCAGTTTAGGATGTGA----TGGTCATAGCTGAAAA
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig24   501316 147 -  1162296 AA--CTAACCACATTGTTT------CCAGTGGCGCCGTTGACAAATCGGTGTATCCggtgaaaaattgtgtttattGAACCCATTCTGGCTGA------GCGA-------TGATATGATGAGAAG-CCGGACG-ATATTCTGATTAGGACGTGA----TGATCAtagctgaaaa
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold629   3504439 136 - 33334924 -----------CATTGTTG------C------CGCCGTTGACAAATCGATGTATCCGGTGGAAAATTGTGTTTATTGAACCCATTTCTTCTGGCATGGATAGA-------TGATATGGTAGAGGA-ACTGTTG-ATT-TGAATTTAAGACGTGA----TGATCAtagctggaa-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        35964 147 +   783054 aa--cATACCACATTGTTGCCTGTTC------CACCATTGACGAATCTGTGTATCCTATGAAAAATAGTGTTTATTGAGCCCATTTTGATTGG-------AGA-------TGATATTTTGGCGAATTCTGTTGTGTC-TGTTTTTAAGGCGTGA----Caatcatatctgaaaa
i caePb3.Scfld02_62     I 1043 I 75
s caeJap4.Scaffold54      196260 150 +   258924 --TTCTAACCACATTGTTC------CCAGCTTCGCCATTTACAAATCTATGAATTCGATTGAATATAGTGTTAATAGAACCCATTCCGGTGGT------TGGC-------TGATATGATACAAA--CTAACTG-CTTTTCAACTCAAGACGGGATGATTGATCATAGCTGGAAA
i caeJap4.Scaffold54    C 0 C 0

a score=-31.000000
s ce10.chrX               725963 5 + 17718866 TTGGT
s caeJap4.Scaffold54      196410 3 +   258924 --AAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        36111 75 +   783054 I
e cb4.chrX              21187338 218 - 21540570 I
e caeSp111.Scaffold629   3504575 0 - 33334924 C
e caeRem4.Crem_Contig24   501463 15 -  1162296 I

a score=-10408.000000
s ce10.chrX               725968  81 + 17718866 TTTTGAGGGCGGTAAATTGAATCAAC----AATCTGAGAAAAAT---------AATG-----TAAGGAAAAGAAAGTGAATTT---------------------------------------------ACTATTAGAGAA---CAAA
s caeRem4.Crem_Contig24   501478 140 -  1162296 AATTGAA---TGTTAGTTAAGATGAG----GAACTGAGGAAAATTTAGGTTCAAATGATGctgattgaaattttataaCATTTTATAATTCTAAGCAACAATGACAAAGAAACAAGTTACACGATTgcattcaaaattaaatttgaa
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold629   3504575  60 - 33334924 ------------------------------aaaatgaaagaaat--------gcATGACGGTTATTGAAGATAgataaagttt----------------------------------------------ttcaaagataa---taaa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      196413  68 +   258924 --------------AGTTAAGGTAAggataaaattcaaaaaaaa---------aaggaagaaaaaaaaacgtaaataaattgt-----------------------------------------------------tgaa---caaa
i caeJap4.Scaffold54    C 0 I 266
e caePb3.Scfld02_62        36111  75 +   783054 I
e cb4.chrX              21187338 218 - 21540570 I

a score=-21914.000000
s ce10.chrX               726049 268 + 17718866 GATTTTTCAATTGAAAATAGAG--------------------------------ATTGGACTGACAAACTAGAA-----------ACAACACTGACAGACTAGGA----ACAGCACTGAC--AAAACTAGGTAAAGCACTGACAAAACTAAGAAATGCACTGACAA---ACTTTAACTTTCAGTTAATA--------------CAACGTTAAATAGTTAAGCAATCAAGTTGA--ATT--------------------------------------TTAGTTT------CTACACAAACACG--------------TTGACTGAA-----AAAATTTCCCTG-------------------------------------TATTCACAAATAT-----------------------------TTTTTTAATTC-CTTCTGTTAACAGAAGCCTATACTAAAAACAAT-------------
s caeRem4.Crem_Contig24   501618 473 -  1162296 aattattggttTTAGAATAGATTCAGCTGTCCCATGGTGCAGTCCGTTGGGACTACTGAGCCGGTAAACAACAAGCGGtttttttGAACCGCAAATAATCTAGAATTGTGCAAAACCTACATGTTACTGGTTCAAATAt--aataaaacaagaaatatcTTATAAAAATACCGTTTTCTAAAGTTAGTATGATTACTTCCAATTAATGTATATCaagaaattaatttaattGGCTATTATTCGTATACGGAATACGACACACTGGAACCGTTACTACTTGTTTGATGCGTTTCACGACcctgaaactgatttttcataCACAAAACCTACAAAATAATGCTGCTGGAAGTATTCCTGTCATACCAATAGAGCACGGAATCAGGTTGAACCCTTAGAGACATTCAAATAATAGAGTGAAccaattgttaattt-tttcgTAAAgctg---tctctctttctcacaATATCGTCTATTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3504635 236 - 33334924 aat------------aataaat-------------------------------------gatgaaaaataataa-----------gaagCACTAACAGT-GATAATTGTCTACTACCAGC---------GTTAAATTCT---------CAACAAACAGCGT-TAAA---TCTGCTATCTGCGGTACCGATGATTTCTTCAA--CAATGCGGCCC-----------TAAATAGCCTATT--------------------------------------CTTGTCT---------------------------------TACACCGTA-----AAAATGTAGCTGCCG----------------------------------CAGTTTCAGTCCT---------------------------AAATTGGTGTTTCATTTCATACAACTACGTCCTCTATTTGTGAAAACAAC----------
i caeSp111.Scaffold629  C 0 I 1
e caePb3.Scfld02_62        36111  75 +   783054 I
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187338 218 - 21540570 I

a score=-9209.000000
s ce10.chrX               726317 315 + 17718866 CCATGC--------CCTTCTGCGTGTGTTTTTTTTT--TCAG---AGAACTAA-----TTTTCTCCT-------GAAATATCACAAC-----AAAACAAGAGACCGCGAG---TGATGGAAAG-------AAAACGGAGCTCG--GCGGAAACGCGTGCTCCA-------------CAGCAGGGAAAAGATGCCACACGTATGACTCATTCATTTCT------CATGTGTTTTTTGGGAAGGA-------AA--ATTGGAAGAAAATGATGCGTGGGTAGATGAAAGAAA----------------TTTG-----------AAAGCATATGGAACCGACACATTATTGAGCAAATTGAG----------CTTTCTCGAGAA-----------TTTT--TCTTTTGAGATTTCATGAA------AAAAAAATGCCAAAAAAT--------
s caeRem4.Crem_Contig24   502091 369 -  1162296 CCATCCTGTCTCACTTCTTCCTCTATGTTCCCCCTTCtcgcaaaaaaaactaa-----tttcatctcagaaaaaagaaaaaacagatagagaaaaacagaaaagagcaAG---TGAACAGAGAGGAGCAGCAACAGCGGCTCACAACGGAAACGCGTGGT----------------CAACCCAGAAA--ATGCCACACGTGTGACTCATTCT-----------CATGTGTTTTTTGGTAACAATAGATAGAG--ATGGGGATAT--TGATGCGTGGG---ATGATTGAAACAGATAGGACAGGATGCGGGATTTCATGGAAAAAACATCTGGCACCA---------TTAGCACATCTagatttttggttattttttgtGGACGATAACGATCTTTTGCTTTTTCGCAAAAGAGTCCA-------------------AAAAT--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3504872 379 - 33334924 TCATGgt-caacatttttcgaatcctgttttgtttt--tcagataaaaactaa-----tttcgC----------GAAGCATCGagttttagagaaaaagagtcgaGAAAGAAGTGAACAGAGA-------TACGAGGAGCTCACAGCGGAAACGcgtgctctctctctctctcactcagaaaaaaga--atgccACACGTATgactcattcatttcttttgctcatgtgttttttggaaggaa---acaaaaagataaagGTT---CGGTGCGTGGGTAGATGAAAGGAAAAGATCTGGCAAGATATATG-----------AAAGCATCTGGTACCA---------TTATCGAACC-------------AATTCGTGGGAATAAG--TGATATTCT--TATATTGTGAGTGTGTATTCTGGTCTATAAAGGAACAGAAAACCAAGAAAC
i caeSp111.Scaffold629  I 1 I 46
s caePb3.Scfld02_62        36186 290 +   783054 CTATGG--------TTTTCCGGTggagtttatttttcattaaccAAAAACTAAATTCTTTTCACTCT----GAAAGAGCAGCAAGAATGCGAAAAAATAGAGGGAGAAAG-----------GA-------CAAAAAGAGCTTGgagcagagaaaaatgaactc-------------aacGGAAGATA--ACGTTCTATGTATGAGTCATCGTTTTA-------CATAtgtttttagagaaaaa---acaaaa--atcgaattttgatgATGCGTGGG--------AGGAAAA-------CACGATTTGTA-----------------------------------------------------------AGTTACTGGAAATAAGAATGACTCTAT--CATCTTGTAATTTCGTGCT-------------------AATGCC-------
i caePb3.Scfld02_62     I 75 C 0
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187338 218 - 21540570 I

a score=-4477.000000
s ce10.chrX               726632 52 + 17718866 AGTTTTCTTATAGCTATTAAAAATCAGTTGTGTTGGTGAATTCATGAACATG-------------------
s caeRem4.Crem_Contig24   502460 61 -  1162296 AG---acttaaaactg--aaaaacgagCTGT-----TAGAGAtagaagttttttgttgaaatttgcatatt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        36476 22 +   783054 -------------CCG----AGATCAGCT-------------TAGGAATTtt-------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187338 218 - 21540570 I
e caeSp111.Scaffold629   3505251 46 - 33334924 I

a score=-7893.000000
s ce10.chrX               726684 42 + 17718866 ACATAATTTTTCAAACTTTCAACGCGCTAAGTAGAAATATGA--------------------------------
s caeRem4.Crem_Contig24   502521 60 -  1162296 ---atacatt----ttttcgatttcgac-------AGTTTTCTTGCGATTCCCTCGTTCCACGTTCAAATATGA
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold629   3505297 36 - 33334924 ACTTAGTGTTCGAATCCACCAACATGAC-------AATTTCCG-------------------------------
i caeSp111.Scaffold629  I 46 C 0
s caePb3.Scfld02_62        36498 30 +   783054 acttgatttt----tctttgatcgTGAT---------TCTCAT-------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187338 218 - 21540570 I

a score=30673.000000
s ce10.chrX               726726 80 + 17718866 CTTGCTGACTCAACGAGA------------------TGAGAAGGGGAATAGATGGTGACATATTGCCGGTTAATCAAGTTTTTCGTGATGCATGTGAC
s cb4.chrX              21187556 86 - 21540570 CTTGCTGACTCAACTCTGTTTCGG------------TGTTTGAGAAGGGAAACGGTGACATACTGACACTTAATCAAGTTTTTTGTGATGCATGTGAC
i cb4.chrX              I 218 C 0
s caeRem4.Crem_Contig24   502591 86 -  1162296 GCCGCTGACTCAGCATTTTTTCGg------------cgaggaagaaaaaggagggTGACATACTGGCACttaatcaagtttttcatgaTGCATGTGAC
i caeRem4.Crem_Contig24 I 10 C 0
s caeSp111.Scaffold629   3505333 72 - 33334924 CTTGGTGACtca------------------------tgaaaaaggaaa-agacgGTGATGTATTGCCAGTTAATCAAGTTTT-TATGATGCACGTGAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        36528 97 +   783054 TGCGATGACtcaacattttctcattttctctgacAGTGAAACATAAAATGGACGATAA-ATACTGTCAATTTATCAAGTTTTCCATGATGCATGTGAC
i caePb3.Scfld02_62     C 0 I 213
e caeJap4.Scaffold54      196481 266 +   258924 I

a score=-5079.000000
s ce10.chrX               726806 23 + 17718866 ----CATTTTGTGAGGAAA-----------TTCGAGAG------
s cb4.chrX              21187642 17 - 21540570 C-GGCGTTTT---AGGTAA-----------------GA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   502677 35 -  1162296 CAGGTGTCTT---AGTGAAATGACTACAGACACGCGGA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3505405 23 - 33334924 -CCGTGTAtt---aggaaa-----------------aatgaaag
i caeSp111.Scaffold629  C 0 I 326
e caePb3.Scfld02_62        36625 213 +   783054 I
e caeJap4.Scaffold54      196481 266 +   258924 I

a score=679.000000
s ce10.chrX               726829 46 + 17718866 ACAGTTTCACTAGAAAATTGGTCACTTTTGTAGTTAGGAAGAAAAA
s cb4.chrX              21187659 36 - 21540570 AAAATTGCATTCAAAAAGTG----------TAGACAGCAAGTAAAA
i cb4.chrX              C 0 I 178
s caeRem4.Crem_Contig24   502712 38 -  1162296 Gaacatttataaaaaaagtt--------tctaaaaagGAAGAGTGA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        36625 213 +   783054 I
e caeJap4.Scaffold54      196481 266 +   258924 I
e caeSp111.Scaffold629   3505428 326 - 33334924 I

a score=-7148.000000
s ce10.chrX               726875 767 + 17718866  
s caeRem4.Crem_Contig24   502750 436 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        36625 213 +   783054 I
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187695 178 - 21540570 I
e caeSp111.Scaffold629   3505428 326 - 33334924 I

a score=600.000000
s ce10.chrX               727642 31 + 17718866 CAAGAAACACATA--GTTATGCTTATACATTCA
s caeRem4.Crem_Contig24   503186 24 -  1162296 CAAGAA---------TTCAGGAGAATACGCAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        36838 33 +   783054 CAAGAAACTAATAGGTTTGTGAgaacacaatga
i caePb3.Scfld02_62     I 213 C 0
e caeJap4.Scaffold54      196481 266 +   258924 I
e cb4.chrX              21187695 178 - 21540570 I
e caeSp111.Scaffold629   3505428 326 - 33334924 I

a score=-3071.000000
s ce10.chrX               727673 66 + 17718866 AAAA-AAAATATTTAATAACAAATGAA--TTAAATCGTAGAACTCAAACTTGAAAACGGCCGAACACAT--
s caeRem4.Crem_Contig24   503210 69 -  1162296 CAGACCGccaaataaataataaaaaaaacagaaagggACCGATGTACACTGGAAAACCACCAAACACGG--
i caeRem4.Crem_Contig24 C 0 I 15
s caePb3.Scfld02_62        36871 68 +   783054 aaaacaagctaatcaagaa-aaacaaaacgtgaaacgaacaaaaaaaattgaaaaagagaccATCACAA--
i caePb3.Scfld02_62     C 0 I 7
s caeJap4.Scaffold54      196747 66 +   258924 aaaaaaaatgtttcgaatgtaaataaa----taaataaacaagaaaaa-tagtCAACCTCCGGTCAGGCTC
i caeJap4.Scaffold54    I 266 C 0
e cb4.chrX              21187695 178 - 21540570 I
e caeSp111.Scaffold629   3505428 326 - 33334924 I

a score=2173.000000
s ce10.chrX               727739 15 + 17718866 GGCAAAGAGAGCCAC
s caeRem4.Crem_Contig24   503294 15 -  1162296 GAGGAGGAGAACCAC
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold629   3505754 15 - 33334924 GATGAGGAGAACCAC
i caeSp111.Scaffold629  I 326 C 0
s caePb3.Scfld02_62        36946 15 +   783054 GACGCGCGGGACACA
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold54      196813 13 +   258924 --CAGCAAAAACCTC
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21187695 178 - 21540570 I

a score=44801.000000
s ce10.chrX               727754 155 + 17718866 AAAACAT----TGTGTGTATGTT-------GGGCAAA---GGGGGGAGACAGAACTAAAGAGAACGT-CATA-----TTAAGAGACGCAGGCACGGCGGGTAGTGCAACGCGTTTACCGAAAATAGCGCGTAAGGC-GCGTAGTGCGCAGGCTGATCAATCGATAATTGAGT--TGT----------------------------G
s cb4.chrX              21187873 184 - 21540570 AAAACATGAAGAatatg---ata-------gaaaaaa---aagaagag---ggatGAGAGAGAATGCGCATGAAATACGAAGAAACGCAGACACAGTGTGAGGTACAACGCGGTAACCAAAAAGAGCGCACAGGCCAACATAGTACGCAGATTGATCAATCAATAGTGGAGT--CGCGAgtgtgtgtctctgtatgtatgt----g
i cb4.chrX              I 178 C 0
s caeRem4.Crem_Contig24   503309 151 -  1162296 CAAACAT----AGTGTG----TT-------GAGGACA---GGGGGGAT---GAGTCATAGACAATGCGTat------tgaagagacgcagacacgctGAGTAGTGCAACGCATTTACCAAAAAGAGCGCGGAGGCC-TCGTAGTGCGCAGATTGATCAATCGATAATTGAGT--TGGAGG-------------------------G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3505769 178 - 33334924 CAAACAT----AGTGTG---TTGAGGACACAAGGAAAATTGAAGGGAT---GACTCATAGATAACGT-CATA-----CGAAGAGACACAGACACGTTGCCTTGCGCTACGCGGTTACCGAAAAGAGCGGGAGGAGT-GCGTAGTGCGCAGGCTGATCAATCGATAATTGAGT----------TGTCTCTTCTCCTATATGTGTA-G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        36961 175 +   783054 GAACCAC----TGCCCG---GTG-------GATGAAA---GAAGGGAT---GACTCATAGAGCACGT-CATG-----TGAAGAGACGCAGGGTAGAGGGTTCGTGCTACGCGGTAATCGGAAAGAACGCACAGACA-TAGTAGTGCGCAGATTGATCAATCAATAGATGAGT--TG--AGTCTGCCTCTTTGTCTACGTGTTTGCG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      196826 135 +   258924 CAAACAT----AGTGTG--TTCT-------GAGCTAA---ACAGCGTT----------------CGT-CATA-------AAGAAACGCAGGCATGGCGAGATGACCAACGTTTTTCTCCGAAAGAGCGCATTGTGT-GCCTCGTACGCAGGTCTATCAATCGATAACTGAGTAATG------------------------------
i caeJap4.Scaffold54    C 0 I 4225

a score=-4732.000000
s ce10.chrX               727909 158 + 17718866 TCAATGGGTTGCGGGAGACG-----TAGTGGTGTGTGGTAGGGTGGACA---CAC----------------------------------------------------------------CGGCCGGGACGAATGAG--------------------AATGC---GGTGACGAAGACCCAGAGAGCGGAGCGAACGAAGAGGTTTAGAGAAAAGGAAATGCAAAGGACAGGGGT-----GTTTGTGGGTGAGTCATACT
s cb4.chrX              21188057 230 - 21540570 tgtgtgtgtc-agACGGGTG-----CGGCGTT---------GGTGGACAACACacgggagggggggggggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggggggAGGGA-GAGGGGATTCGGCCCGAGGGCACGAGGAATGG---AAAGAGAATGGGACAGAGAGGGGGCTGGAGAACGAC----AAGGGGTAGATAATACGAAACGCAGTAGG-----TTGTGTGTATGACTCACACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   503460 134 -  1162296 AGAGTGTGTC--GGCGGGTG-----CGGTGTTG--------GGTGGACAACACAC--------------------------------------------------------------------CGGGA-Gatagaa--------------------agtga---gagaaaaatgcGGGCAAGAGGGG--------AAAAA----GAAAGGCAGATAATACGAAAGGCAGTAGG-----TTGGGAGTATGACTCATACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3505947 117 - 33334924 AGGGTGCG----GGCGG--------TGGTGGTGT-------GGTGGACAACACAC-----------------------------------------------------------------------------------------------------AGCCATCGGGAGACATA----AGggaaattg--------aagag----agaagagaggcAATACGAAGGGCAGTAGG-----TTGAGAGTATGAGTCATAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        37136 130 +   783054 TGTGTGTGTT-TGGCGGGTGCAAAAGGGTGTGGT-------GGTGAACAACGCAC-----------------------------------------------------------------------------------------------------aaaga---gaataaatagcacagaggaagag--------aagaa----aaaagagagggaa----agaggCGATGCGAATATCTAGGAGAATGAGTCATACT
i caePb3.Scfld02_62     C 0 I 992
e caeJap4.Scaffold54      196961 4225 +   258924 I

a score=13021.000000
s ce10.chrX               728067 31 + 17718866 TCTATGTCGTAAAGACAATCGCGTTCGGTTT
s cb4.chrX              21188287 31 - 21540570 GCGATGTCGCAAAGACAATTGTGTTCAGTTT
i cb4.chrX              C 0 I 869
s caeRem4.Crem_Contig24   503594 31 -  1162296 GCAGTGTCGTAAAGACAATTGCGTTCGGTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3506064 31 - 33334924 GCTGTGTCGTAAAGACAAATGCGTTCGGTCT
i caeSp111.Scaffold629  C 0 I 973
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I

a score=629.000000
s ce10.chrX               728098 30 + 17718866 ---GTCTCTT----------GAATTTATTGTACTGATATGAAA
s caeRem4.Crem_Contig24   503625 43 -  1162296 TCCATCTCTTCTTACACTTGGATTTCATTATAACGATGGGAGA
i caeRem4.Crem_Contig24 C 0 I 1306
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I
e caeSp111.Scaffold629   3506095 973 - 33334924 I

a score=0.000000
s ce10.chrX               728128 2819 + 17718866  
e caePb3.Scfld02_62        37266  992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318  869 - 21540570 I
e caeSp111.Scaffold629   3506095  973 - 33334924 I
e caeRem4.Crem_Contig24   503668 1306 -  1162296 I

a score=1170.000000
s ce10.chrX               730947 70 + 17718866 CACTTATGCAACTCACATGAACTTCCCGGCGGTTTTCAATGCGAACTGAAGTTTATTTGCGTCATGGGAA
s caeRem4.Crem_Contig24   504974 59 -  1162296 CACACCTGAAGTGCACATCAACTT---------TTCCAATA--AACTTGAGTACCATTGCGtcaaaagaa
i caeRem4.Crem_Contig24 I 1306 I 22
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I
e caeSp111.Scaffold629   3506095 973 - 33334924 I

a score=0.000000
s ce10.chrX               731017 8 + 17718866 ATTTTTGG
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I
e caeSp111.Scaffold629   3506095 973 - 33334924 I
e caeRem4.Crem_Contig24   505033 22 -  1162296 I

a score=355.000000
s ce10.chrX               731025 12 + 17718866 CCATTTTAATGG
s caeSp111.Scaffold629   3507068 12 - 33334924 CCATAATAAAAG
i caeSp111.Scaffold629  I 973 C 0
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I
e caeRem4.Crem_Contig24   505033 22 -  1162296 I

a score=2024.000000
s ce10.chrX               731037 237 + 17718866 ----GAATAACCACTTGAAAACATCTTCAGACATACGTC--ATATATTTTC---ATTTTT------GAAAAAAATCTATCATTCATTGTTGAA-CCAATGTATAATTGAGAA---AAAAGTTAACAAAGCTACAATGCTCGAATAAAAAAAAAAGAAAGTTGGAAAGAAAGATGAAAAAAAAACA------GAGATCGTGATCC---GACCAAGTA----AAAATTTAAGTACTGAATGTTATCACTGGTGAAAAATGAAGAAAAAATT-
s caeRem4.Crem_Contig24   505055 241 -  1162296 ----GAGTGACCACTTGAAATCATCTTCAGACATACGTCATACACGTCTTCTCGATTTCTTTTTATTGTCAAAGTGAACCACCC--CATCTAATCTATCATTTTATTGCAAATTTAGAAATAAACG---------------TGCAAAAAGGAATAGAAATCAAcatgagaaattgaaatcatACAGATAATGAGATCGTGGTCCTCATAACATTCACACTAAGATTAGTGAAAT-ATTATTATCACTGGTCAc------tggaaaaagt-
i caeRem4.Crem_Contig24 I 22 C 0
s caeSp111.Scaffold629   3507080 208 - 33334924 ACACAACTACATACTTGAAACCATCTTCAGACAAGCTTC--ACATCTCTTATTAGTTTAT---------------------------GTCGAATctaacttttaa----------aaaactaaacta--tcacttcatttctgaaaaatcaaaaataagttaaaataag---ttaaaacga----------aaaatcgTGGTCCTCGTACCATTGACAC-AAGACAACTAGAATAAATATGATtactgattga-------aaaaaaagtc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        37266 992 +   783054 I
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I

a score=-6062.000000
s ce10.chrX               731274 56 + 17718866 AAAAAAGAAAAAAAACCGGTTGC-----TACATTA-TTGATAAATTGAGCAAAATGGATAAG-------------
s caeRem4.Crem_Contig24   505296 57 -  1162296 aaaat------aaaacCGGTTTG-----TGTATTTCATGATAAGTTA-------TGCATATAGCGTCTCACTGCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3507288 23 - 33334924 -----------gaGACCGGTgga-------------atgataaaaaa----------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        38258 48 +   783054 aagagacaaaaaaaaccagtatAAACCatgaat---acaacaaaaaaaatc------------------------
i caePb3.Scfld02_62     I 992 C 0
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21188318 869 - 21540570 I

a score=27570.000000
s ce10.chrX               731330 39 + 17718866 TTAAACTGCACTGATTTTGGTATCCTTATCGGTGTAGTC
s cb4.chrX              21189187 39 - 21540570 tcaAACTGCACTGATTTTGGTGTCCTTGTCGGTGTAGTC
i cb4.chrX              I 869 C 0
s caeRem4.Crem_Contig24   505353 39 -  1162296 TCAAACAGCACTTATTTTAGTGTCCTTGTCGGTGTAAtc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3507311 39 - 33334924 tcaaacagCACTAATTTTGGTTTCCTTGTCCGTATAAtc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        38306 39 +   783054 tcaaacagAACTAATTTTAGTATTCTTGTCGGTGTAGtc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196961 4225 +   258924 I

a score=2886.000000
s ce10.chrX               731369 17 + 17718866 CAAATTCTG---AAAATTAA--
s cb4.chrX              21189226 19 - 21540570 CATATTCTG---AAAGCGAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   505392 22 -  1162296 catattctgaaaaaagttagta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3507350 17 - 33334924 catattctg---aaattcaa--
i caeSp111.Scaffold629  C 0 I 31
e caePb3.Scfld02_62        38345  0 +   783054 C
e caeJap4.Scaffold54      196961 4225 +   258924 I

a score=-584.000000
s ce10.chrX               731386 8 + 17718866 ATCAGTTT
s cb4.chrX              21189245 3 - 21540570 CTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   505414 8 -  1162296 ATCAGTCT
i caeRem4.Crem_Contig24 C 0 I 271
e caePb3.Scfld02_62        38345 0 +   783054 C
e caeJap4.Scaffold54      196961 4225 +   258924 I
e caeSp111.Scaffold629   3507367 31 - 33334924 I

a score=738.000000
s ce10.chrX               731394 56 + 17718866 TGAAAAGATGAAAATTTCCAAGGCTTGGAAGCTGGATTTGAAACAAAAAGAGTAGC
s cb4.chrX              21189248 48 - 21540570 -----AGATGATCATT---ATGGCGGTAAAATCTGATTTGTAATAAATAAAACTGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        38345  0 +   783054 C
e caeJap4.Scaffold54      196961 4225 +   258924 I
e caeSp111.Scaffold629   3507367 31 - 33334924 I
e caeRem4.Crem_Contig24   505422 271 -  1162296 I

a score=0.000000
s ce10.chrX               731450 803 + 17718866  
e caePb3.Scfld02_62        38345   0 +   783054 C
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21189296   0 - 21540570 C
e caeSp111.Scaffold629   3507367  31 - 33334924 I
e caeRem4.Crem_Contig24   505422 271 -  1162296 I

a score=690.000000
s ce10.chrX               732253 45 + 17718866 CATTTTCCAAAAAACTAATTTATTTCCACCATATTCAACACTGAA
s caePb3.Scfld02_62        38345 41 +   783054 catgttctgaaaa--tattgaattgcTA--ATATAAAACACTCGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196961 4225 +   258924 I
e cb4.chrX              21189296  0 - 21540570 C
e caeSp111.Scaffold629   3507367 31 - 33334924 I
e caeRem4.Crem_Contig24   505422 271 -  1162296 I

a score=-3888.000000
s ce10.chrX               732298 13 + 17718866 AACTGCAAATTTC------------
s cb4.chrX              21189296 13 - 21540570 -------AATTT----GAAACTCC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   505693 24 -  1162296 AACTGCAAATTTTTAGTGAACTGC-
i caeRem4.Crem_Contig24 I 271 C 0
s caePb3.Scfld02_62        38386  7 +   783054 ------------------AACGCGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196961 4225 +   258924 I
e caeSp111.Scaffold629   3507367 31 - 33334924 I

a score=2822.000000
s ce10.chrX               732311 206 + 17718866 AAACTGCAAACTCAAGCCACTCTTGCAAAAGAATAGATAACAATACGGTAGCTATACACAT------------T--TGAAAACCG------------------------CGC---AACAGTAAGATAGGCATGACTT--TCAAAAAAAGTCA-A--CTGAAA------------AATACGCTA-------GAAAAAAACGTCAG----------------GC-----AACTTACTTAA-------GTTAGTTCACACATAAAGAATTTCCTGGAAT-TTTTAAAAGTTTTTAGAAGC----ATG
s cb4.chrX              21189309 245 - 21540570 CAACAGCAAACTCAAACCACTCTTGCAAAAA---AGATTACACGACAGTTGCTTTGCACAC-------TTTTAT--TTCGAAATACTACTTTTGGAGAT-ACTTTTTCCCgc----gcaaaaaaggaaaacgcAATG--AGAGAAGCAGGCATATGCTCAAA---TTAATATATAAATCGAT-----------GTTTGCGTAAA---------CTTACTTGA-----CAATT-CTGAGA------TCAAGATCAGACGTATAGAATTTCctggaatatttgaaacatATTTAACGA-----AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   505717 258 -  1162296 AAACTGCAAACTCAAGCCACTCTTGCAAAAGAATAGATAACAGTACAGTAGCTATACACAC-------GTT--T--Ttagaaaca-----gttgaaaatggctCGCTCGCGCAAAAGTAAGAAGATAGCAATGAATGTTACAGTAGATGTCACA--CTCAAAAAGTTAACAGAAAATACGCTA-------GCAGGCAacggaaa---------actttttga-----aacttactgATAGTAACTCCTAGATCAAACATAAAGAATTTcctggaat-tttgaaa-atatctggTTA-----AAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3507398 250 - 33334924 AAACGGCAAACTC-AGCCACTCTTgcaaaagaatagaaaacagTACAGTAG-----CACAcgtttatatttt-tgattaaaagtg-----agagaaaattaattaataGCGC----GCAGATAGC---------ATT--TTAGTA--AGTCA----CTCAAC------ATAATAAAAACGCTGGAAAAACGCAGgcaacaaaaacaaacgTTTTAGTACTAAAATGGAACTTAC-----------TAAATTTCATACATAAAGAATTTCCTGTAAT-TTTCGAGCATTTCCTAGGGTT---GAA
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_62        38393 204 +   783054 GAACAGCAAACCCAAATCGTTTTTGCGAAACACCA-ATGATAGTACAGTAG-----CACac-------tctt-t--tcaaaagta-----aaagaaaatgtttt------gc----gCAGCAATC------------------------TCA----CTCAAC---------ATTGAAATTCTATGTA---GCAGGCAACAAAga--------ttattctcaa-----aacttaCTG---------TACAGTTCAAACATAAAGAATTTCCTGTAAT-TTT--AACGT----TAAGATcacaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      196961 4225 +   258924 I

a score=104964.000000
s ce10.chrX               732517 132 + 17718866 TCTAACCTTTATCAGAAGCTGGTGTCTTACATGCTCGTCAATTGTTCCGTGCGATTGAGAGGAAAGAGAGCCGGCT---TGATCAACCAATGATTTGGTGGCGTCGTCTCGAGTATTATTTTGAAAATCCTGGAA
s cb4.chrX              21189554 123 - 21540570 GCTAACCTTGATAAGAAGCTGGTGTCTTACATGTTCGTCG---------TGAGATTGGGATGAGACTGAACCAGCT---TGATCCACCAAAGACTTAGTAGCATCATCCCTTgtgttgttttgaaaatcctgtAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   505975 135 -  1162296 TCTGACCTTGATAAGAAGCTGGTGCCTTACATGTTCGTCGATTGTTGCATGAGATTGAGATGATTGTGAACTGGCTGCCTGGTCCACTAATGATTTTGTGGCATCATCTCGAGTATTGTTTTGGAAGTCCTTAAA
i caeRem4.Crem_Contig24 C 0 I 117
s caeSp111.Scaffold629   3507648 132 - 33334924 ACGAACCTTTATGAGTAACTGATGTCTTACATGTTCATCGATTGTAGCGTGTGATTGAGAAGACAAAGATCCGGCT---TGATCCACTAATGACTTAGTGGCATCATCTCGAGTGTTATTTTGGAAATCCTGTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        38597 132 +   783054 actaacctttaTGAGCAGTTGGTGTCTTACGTTTTCATCAATTGTTGCGTGTGATTGAGAAGATAAGGAACCAGCT---TGGTCAACCAGAGACCTGGTAGCATCTTCCCTTGTGTTTCTATGGAAATCCTGGAA
i caePb3.Scfld02_62     C 0 I 847
s caeJap4.Scaffold54      201186 132 +   258924 TCAAACCTTAATCAGTAGCTGATACCTTACATGCTCATCAGTTGTTGCATGTGATTGAGAAGAAAGGGATCCAGCT---TGATCTACCAGAGATTTGGTAATATCATCCCGAGGATTTTGTTGGGAGTccttgaa
i caeJap4.Scaffold54    I 4225 I 31

a score=273.000000
s ce10.chrX               732649 1 + 17718866 T
s cb4.chrX              21189677 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3507780 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 138
e caePb3.Scfld02_62        38729 847 +   783054 I
e caeJap4.Scaffold54      201318 31 +   258924 I
e caeRem4.Crem_Contig24   506110 117 -  1162296 I

a score=59.000000
s ce10.chrX               732650 3 + 17718866 TAA
s cb4.chrX              21189678 3 - 21540570 AAA
i cb4.chrX              C 0 I 28
e caePb3.Scfld02_62        38729 847 +   783054 I
e caeJap4.Scaffold54      201318 31 +   258924 I
e caeSp111.Scaffold629   3507781 138 - 33334924 I
e caeRem4.Crem_Contig24   506110 117 -  1162296 I

a score=0.000000
s ce10.chrX               732653 933 + 17718866  
e caePb3.Scfld02_62        38729 847 +   783054 I
e caeJap4.Scaffold54      201318  31 +   258924 I
e cb4.chrX              21189681  28 - 21540570 I
e caeSp111.Scaffold629   3507781 138 - 33334924 I
e caeRem4.Crem_Contig24   506110 117 -  1162296 I

a score=100.000000
s ce10.chrX               733586 1 + 17718866 G
s caeRem4.Crem_Contig24   506227 1 -  1162296 G
i caeRem4.Crem_Contig24 I 117 C 0
e caePb3.Scfld02_62        38729 847 +   783054 I
e caeJap4.Scaffold54      201318 31 +   258924 I
e cb4.chrX              21189681 28 - 21540570 I
e caeSp111.Scaffold629   3507781 138 - 33334924 I

a score=273.000000
s ce10.chrX               733587 1 + 17718866 T
s caeRem4.Crem_Contig24   506228 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      201349 1 +   258924 t
i caeJap4.Scaffold54    I 31 C 0
e caePb3.Scfld02_62        38729 847 +   783054 I
e cb4.chrX              21189681 28 - 21540570 I
e caeSp111.Scaffold629   3507781 138 - 33334924 I

a score=546.000000
s ce10.chrX               733588 1 + 17718866 T
s cb4.chrX              21189709 1 - 21540570 t
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig24   506229 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      201350 1 +   258924 t
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        38729 847 +   783054 I
e caeSp111.Scaffold629   3507781 138 - 33334924 I

a score=301084.000000
s ce10.chrX               733589 505 + 17718866  
s cb4.chrX              21189710 450 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   506230 456 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3507919 452 - 33334924  
i caeSp111.Scaffold629  I 138 C 0
s caePb3.Scfld02_62        39576 566 +   783054  
i caePb3.Scfld02_62     I 847 C 0
s caeJap4.Scaffold54      201351 615 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=-28088.000000
s ce10.chrX               734094 126 + 17718866 AAATTTTGAAAATTTTTTGTTGTTGATGGAAATGTTTAATAATTTTTTAAGGAGTAGCAAAAACCGACACAAAAATCCGAAACATAATTTTTTCAACGAGTCATGCGGTGAATACTTTCAAAATAT
s cb4.chrX              21190160  38 - 21540570 --------aaattcattt------------------------------------------------------------------ttccttttt--------tctgcaTTGAA-----ACGAA-GAT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   506686  23 -  1162296 --------AAAATGTTTTATAT-------------------------------------------------------------agtactttt----------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        40142  78 +   783054 ---------AAATTACTTGTTTGTACTTCATATGTGCCTTGtttgtttg----------------------------------agtttttttttagataggTTTTCAGTGAA-----TGAAACCAT
i caePb3.Scfld02_62     C 0 I 9
s caeJap4.Scaffold54      201966  49 +   258924 ----ATTGTAATTATGTTAATAAAGTTATAAGCGTGTGAGCTATGA-------------------------------------CCTACTC------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3508371   0 - 33334924 C

a score=-11076.000000
s ce10.chrX               734220 94 + 17718866 GTTTTGGAATTTGTTTGTGCAGTTAAATTTCATTTTACCTATGCTATAATTTTGGAAGTCCAAAAAAGTTTTTCTAC--------ATCTTGAATGTTTTAAT
s caeRem4.Crem_Contig24   506709 20 -  1162296 ------------------------------------------------ctttttg---------aaaatgtttctat-------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        40229 84 +   783054 attttcatattcctaTTTCTCgtagaactgaaaat---------catatttctgg---------ataatttttaaatgttgaaaaatctcGCACATTTAAAT
i caePb3.Scfld02_62     I 9 C 0
s caeJap4.Scaffold54      202015 44 +   258924 ------TTGTTCGGATGGTCAGTT----------------------------------------GATATTTTGCCAT--------TGCTCGACCACTT----
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21190198  2 - 21540570 I
e caeSp111.Scaffold629   3508371  0 - 33334924 C

a score=-2307.000000
s ce10.chrX               734314 33 + 17718866 TACGTTTTAAT----------TAGTTGT-ATCTAATTAT---ATAAA
s caePb3.Scfld02_62        40313 47 +   783054 CATGTTTGGATGTTTCCCTTCTAGCCGCGAAACAATTGTGGAATATA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      202059 16 +   258924 ----------------------------TCTCTAACTTT---ATAAA
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21190198  2 - 21540570 I
e caeSp111.Scaffold629   3508371  0 - 33334924 C
e caeRem4.Crem_Contig24   506729  0 -  1162296 C

a score=-1425.000000
s ce10.chrX               734347 124 + 17718866 AAATCAACCCTGCGGCAATGCTAAAAAAGTGCTTTAGAAAAAAACAATTTTTCAAAAAAGGCTGCTCAATGCTAAAAAAAAATGCTCAAAGCCATTTCGAGAAAAAGATATTATTTTTACACAA
s caePb3.Scfld02_62        40360  93 +   783054 GAATGAAGTCAACG--AATAC--AAAATATTATCTTGATGTGAGTTGTTATCTAATCTGATCTGCTACGTCACAAATAAAATTGGTAGTAACTTCTT---------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      202075   0 +   258924 C
e cb4.chrX              21190198   2 - 21540570 I
e caeSp111.Scaffold629   3508371   0 - 33334924 C
e caeRem4.Crem_Contig24   506729   0 -  1162296 C

a score=2430.000000
s ce10.chrX               734471 6 + 17718866 ACCCTT
s cb4.chrX              21190200 6 - 21540570 ACTCTG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   506729 6 -  1162296 ACCCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        40453 6 +   783054 ACCCTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      202075 0 +   258924 C
e caeSp111.Scaffold629   3508371 0 - 33334924 C

a score=29722.000000
s ce10.chrX               734477 50 + 17718866 GTCCTAATCGTAAGCTGATACTTGGCCATGGCACGTCCACTCGCGCGAAC
s cb4.chrX              21190206 50 - 21540570 GTTCGAATCGTTAATTGATACTTGGCCATTGCTCGTCCACTCTCACGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   506735 50 -  1162296 GTTCGTATCGTTAGTTGATATTTTGCCATCGCTCGTCCACTTTCTCTCAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3508371 50 - 33334924 GTCCTTATCGTCAGCTGGTATTTGGCCATAGCTCGTCCACTCTCACGCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        40459 50 +   783054 GTTCTTATTGTTAATTGATACTTGGCCATCGCACGACCACTTTCTCGGAC
i caePb3.Scfld02_62     C 0 I 9198
e caeJap4.Scaffold54      202075  0 +   258924 C

a score=2772.000000
s ce10.chrX               734527 8 + 17718866 TTTTAAAA
s cb4.chrX              21190256 8 - 21540570 TTTGTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   506785 8 -  1162296 TTTGTAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3508421 8 - 33334924 TTTGTAGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      202075 0 +   258924 C

a score=103641.000000
s ce10.chrX               734535 231 + 17718866 TAATAACCGCATAGGAAATAATCATCATGCACAGCGATATGCTATTTACAGCCATGTCAACGTACTTGTATCTGGAAAATTGATGGTTTTAATA-AGATGAAAT--TAGAGAGTCT--------------GAACTTACAACGTGTCTGGCTTTTCGTACACTGTGATGTAATAATTCGAGTCCCAAAGTGTATGACAGCAATCAAATAATGTTGGTAAAGAAACGAGAAAACCCAGGAAATATCCAAA
s cb4.chrX              21190264 245 - 21540570 TGATAACCGCGTAAAATATGATCATCATACACAGCGAGATACTGTTGACCGCCATATCAACATACTTGTACCTGAACAA--ACTTATTCAATCA-ATGTCAGATAACATAACGTTTAGATaaaaaaaTAGCAACTTACAATGTCCCCGGTTTCTCATAAACGGTGATGTAGTAGTTCGAGTCCCACAAAGTATGACAGCAATCAAAAAGGGTTGGCAACGATACCAGGAATCCGAGAAAATAACCGAA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   506793 228 -  1162296 TAATAACTGCATAAGATATTATCATCATACACAAGGAAATACTATTGACAGCCATATCAACATAtttgtatctgaaaa----------tcatca-atttcgaTT--CCTGAAGTTTCCATACA-------CGACTTACAACGTCTCTGGTTTTTCATAGACTGTGATATAATAATTGGAATCCCATAAAGTATGACAGCAATCAAATAAAGTGGGTAATGACACCAGGAAACCAAGGAAATATCCGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3508429 227 - 33334924 TAATAACAGCATATGAAATTATCATCATGCATAGTGAAATGCTGTTGACTGCCATATCAACGTACttgtatctgaaaa----------taagaatattTAAACT--TCTCAGGTTTTTAGT---------CTACTTACAATGTGTCAGGTTTTTCATACACAGTGATATAATAATTGGAATCCCAAAGTGTGTGACAACAATCAAACAGAGTTGGAAgcgaaaccaaaaaaccaagaaaataTCCAAA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      202075 228 +   258924 TAATTACAGCATAAGAGACGATCATCATGAAAAGTGAAATACTGTTTACGGCCATATCAACGTACTTATATCttaaaagaaaacattttaatac-aTTGAAAAG--CTT---GTTT--------------TTCCTTACAATGTCTCTGGCTTTTCATAAACTGTAATATAATAGTTGGAATCCCAAAGTGTGTGGCAGCAGTCAAAAAGAGTTGGTAACGAAATGAGGAACCCGATGACATAACCGAG
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=-169.000000
s ce10.chrX               734766 4 + 17718866 TAAA-
s caeRem4.Crem_Contig24   507021 3 -  1162296 -AAG-
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3508656 4 - 33334924 CAAA-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      202303 4 +   258924 -AAAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e cb4.chrX              21190509 4 - 21540570 I

a score=34700.000000
s ce10.chrX               734770 113 + 17718866 ATAAGATATAACGACCTTGTTCGCGAAAAAATGTGTTTGTACTCCATAGGGTACACAATTGAAACAAATCTGCAATTTACAAAATTTCCATTAAGTAC--------------------------------------------GGAAAAGACATCAGA
s cb4.chrX              21190513 103 - 21540570 ATTAGGTACAACGACCTAGTTCGAGAGAAAATGTGCTTGTATTCCATTGGGTAAACAATTGAgacgaatctgaaa-----aaaaa---cacttactTT----------------------------------------------GACGATTCTCAGA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   507025 100 -  1162296 ATAAGATATATCGACCTAGTCCGGGAGAAAATGTGTTTGTACTCCATAGGGTACACAATAGAaacaaatctgaaag----aaaaa---cagtga--------------------------------------------------aaagaaTATTTGA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3508660 106 - 33334924 ATGAGATACAATGACCTGGACCTGGAGAATATATGTTTGTACTCCATAGGATACACAATTGATACAAATCTGAGAA----AAACT---TATAGAATAT--------------------------------------------GGGAAGGAGGTTGGA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      202307 152 +   258924 ATTAAATATAAAGACCGAGGACGCGAAAAAATGTGCTTGTACTCCATTGGATATACAATTGAGACAAAtctgcaaaac--aaaaa---taataatttcaaAACTGAAACTATTAcatattgtttaaaaaaatttgtcaactGGCGAAAGGCgtgagt
i caeJap4.Scaffold54    C 0 I 340
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=121920.000000
s ce10.chrX               734883 206 + 17718866 CTT--------------ACCTATTTCCAGCCATCAACCCCAGCTGAACAACTCCGGTGTACCAAAACAGGTCGTAGAAAAATATCATAACAATATTTCGAATCGATTTGAATTGTACATATTCTTCATGAAATGCAGTAGCTGGTACTAAATGACCAAGTGAGATAAATGTCATTAATATGTCACAGATTGCAATTGATATGATAAACCAGTAACTGAAA
s cb4.chrX              21190616 216 - 21540570 GTA----CACATGCATTACCTATTTCCTGCCATCAGGCCCAGCTGTACAACACCGGTGTACCAAAACAAGTCgtagaaaaaaatcatgatgATATTGCGCACGGACTTAAATTGCACGTACTCTTCGTGAAATGCGGTGGCAGGAACCAAATGCACCAGTGAGATGATTGTCATAAGAATGTCACATATTGCGATAGATATGATAAACCAATAGCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   507125 220 -  1162296 GTAACTCAGAACTCATTACCTATTCCCCGCCATCAAACCCAACTGCACGACACCAGTATACCAAAACAAGTCGTAGAAGAAAATCATAATAATGTTGCGGACTGACTTGAATTGTACATATTGTTCATGGAAAGCAGTGGCAGGAACCAAATGGCCCAATGAGATTATTGTCATAAGAATGTCACATATTGCGATTGATATGATAAACCAGTAACTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3508766 212 - 33334924 ATA--------CTCATTACCTATTACCCGCCATCAAACCTAGCTGTACCACTCCTGTGTACCAAAACAAGTCGTAGAAGAATATCATGATGATATTGCGAACTGACTTGAATTGTACATACTGTTCATGAAATGCGGTGGCGGGGACTAGATGACCCAGGGAGATGATGGTCATGAGAATGTCACATATTGCTATTGAGATTATGAACcaataactgaaa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      202799 206 +   258924 --------------CTCACCTATTCCCAGCCATCAAACCCAGTTGCACAACTCCAGTGTACCAAAAAAGATCGTAAAAGAAAATCATCACAATGTTTCGAGTAGATTTGAACTGAACGTACTGCTCATGAAAAGCTGTGGCAGGAACTAAATGTCCTAGTGAAATAAACGTCATGAGGATATCGCAAACAGCAATAGAAATGATAAACCAATAGCTTAAA
i caeJap4.Scaffold54    I 340 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=-12397.000000
s ce10.chrX               735089 49 + 17718866 ----------------ACATAGTGCATTGCTTTTCATTTC-----TTTCAGTGCAATTTCAAATTTGTCA--------
s cb4.chrX              21190832 47 - 21540570 ------------------------TGTGAGTTT--ACGAT-----ACCCTAAAGAAtcagcaaattttcagcaaatct
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   507345 77 -  1162296 GAAATCTTTGGTTATTAC-CAGAGTATgagttttcacgttttttcactaaaaaaaagCCAACAATTCTAGCTGAGTCT
i caeRem4.Crem_Contig24 C 0 I 193
s caeSp111.Scaffold629   3508978 13 - 33334924 ----------------at-caaagtttcag------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203005  0 +   258924 C

a score=-5494.000000
s ce10.chrX               735138 95 + 17718866 GTGCAAAAGTACATTTTGTTTGTTTTGATAATTTTGTCAGTGCGACAGTCTAACTTGGTCAGTGCGCCAGCCTAAGTTGGTCAGTGCAGGCGTTC--------
s cb4.chrX              21190883 38 - 21540570 ATGCCAAAGCAC----------------TCATTT------------------------------------CATGAAAT-----ATATcgattctc--------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold629   3508991 48 - 33334924 ata-gaaaacaa----------------taatCTAGAGA-------------------------------CATAAAAT-----gtgt--attttcaaatttta
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203005  0 +   258924 C
e caeRem4.Crem_Contig24   507422 193 -  1162296 I

a score=-20595.000000
s ce10.chrX               735233  77 + 17718866 ATTTTGG-------------------------------------TCAGTGCAACATGCTAATTGA------------------------------------------------------------AGACGATT--------------TCGTTACACTA-------------------CAAACGC-----------AAACTTTCAA----AACTTAGCTCATT
s cb4.chrX              21190921  66 - 21540570 --------------------------------------------atttttcaaaacatcattTCA------------------------------------------------------------AGACTCATGA------------CTCTCAAACCA-------------------GAAatat-----------aaac----------attttcattttgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   507615 222 -  1162296 ATTTTGGTGAAAGTAAAAGGGAATCGTTATTAACATGGGCTATGTTTTTTAAAGATATGGTTTGatcataaattgttttttttatttgtttccagCTTTGTATTGACAAAAACTGTTCGTTCTATAGATTactgaaattgtgaaactttCCTAAGCAACACATTATTCATTTGTACTGTGATATCCCTCAATGTCAAACATTTCAgcagattttcatttttt
i caeRem4.Crem_Contig24 I 193 C 0
s caeSp111.Scaffold629   3509039  50 - 33334924 -----------------------------------------------------------------------------------------------------------------------------gtATTAGTAAGTTTTTGTA---GCTCCAAAAAa-------------------gtaataa-------------------------atttttaactttt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203005   0 +   258924 C

a score=58585.000000
s ce10.chrX               735310 192 + 17718866 AATTTTTTGAA----------------------------------ACAGCAAACCGTATTAAAAAAACATTTCTC------------------ACCTTGTGGCAGATCTCATAGTTGAGCTTCGAGCAATTCCAGCTAAAATGAGCATGTTTGAAATTAAGGCATAAAGTAGCATTATGGTCCATATTGATACAGCTATGAAGTCATCTCGACGGTTTGCTGAGGTGCTGAAAAAA--------ACACAATA
s cb4.chrX              21190987 180 - 21540570 taTTTG---------------------------------------AGTTTTTCCAGCTCCAAAATCAA-------------------------ACCTGGTTGCTGATCTCATGGTTGCACTACGAGCGATCCCGGCAAGAATGAGCATGTTGGCGATGAGAGCGTACAATAGCATAATAGTCCAAATTGAAACGGCTATCAAGTCATCTCTGCGATTGGCGGATgtgctggaaaaa--------agaaaata
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24   507837 247 -  1162296 tgtttgtaaaaCCGCCGGGGGTCACAAAAGGGTTTTATGTTTATTAATTTCACCTGTTTCAACATAAAATATCTTTTAGTCATAAGGAGGCTCACCTTGTTGCTGATCTCATAGTTGCACTACGAGCAATTCCGGCTAAAATGAGCATGTTTGAGATAAGTGCGTAAAGAAGCATGATTGTCCATATTGAAACTGCTATGAAATCATCCCGACGATTTGCTGAGGTGCTGAAaacacacttttgaga-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3509089 166 - 33334924 aattctttaaa----------------------------------aaattc------------------------------------------acctTGTAGCAGACCTCATTGTTGAGCTTCGTGCAATTCCGGCTAAGATGAGCATGTTAGAAATAAGGGCGTAAAGTAACATAATTGTCCATATTGAAACTGCTATGAAATCATCCCGACGATTCGCTGATGTGCTGaatataaattta----------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      203005 200 +   258924 ----------------------AATAAACGAATTT----------AGaattagcaacaaaaaaaaaggattctATGAATTT------------ACCTAGTTGCTGATCGCATTGTTGAGCTTCGCGCAATACCGGCTAATATGAGAATATTTGAAAATAGGGCATAAAGGAGCATAGTGGTCCAAATGGACACTGCAATGAAGTCATCTCGTCGGTTAGTTGATGTGCTGAAAAAAGTTTGTTC--------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=-7295.000000
s ce10.chrX               735502 48 + 17718866 TTTTTTTGCACTGCAACC-----TGTGTGTGCCA-----AAATGATTTTCttttaatt
s caeRem4.Crem_Contig24   508084 41 -  1162296 --tttagG--TGACATGT-----AGTCGGTGTAT-----GAATATGTTTTCTgtg---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3509255 39 - 33334924 ttttttggttttacacta-----atttagc--------------ttttttctcaaagt
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold54      203205 55 +   258924 TTTTATGGAACTTTGTTCTTGAAAGTAGGCACATTCATCTAATAATTtgtctatt---
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e cb4.chrX              21191167 39 - 21540570 I

a score=3900.000000
s ce10.chrX               735550 274 + 17718866 tttttttaattttGGAAAGAAAACAACAAATATCTACATTTTTT----AAAATATTTAAACCATACAATAAAGCTTGCAATGTATAAAACGACACATTATGTTTCCAAGAATCGTCAGTCTGCATTATAAATCCGATATCCAAATTAATCAGTTTGAAGTTTTTAGGACCTTAATTC----------AGCAGTATAAA-------------TTAGAGATC------------ATACGTAATATAAAACAG-----------------------AAAAATAAGAAAT-----ATTTGTTTCCGGATGA---------GGGAGTGAGAAAG--------AAAAAGATTTCCGACTTCT-TG
s cb4.chrX              21191206 276 - 21540570 ttttgttgttcCCCAGAGCGAACcaacaaat-------------------tttctgaaactcgtACAATAAGGCTTGCAATGTGAAAAACGAAACATTGTACTTCCACGAATCGTCTGCTTGCATGACAA---------CGG------TCAGCTTCAAGTG----AAACCTTAATTTTAttaaagataattttttgaa---atcacagAAATTAAACGATGCATGGATA---GAAAGTAACGTCCagcac-----------------------aaaaaaatgaagtaaGGAAATCGTTTCCGGAAAA--------TGAGAGGGAGTGGG--------AAaaagattttcgatttctctg
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig24   508125 303 -  1162296 ttttgttgatttt--gatttgGATGACaaa--------------------------aaaaCCATACAATAGTGCTTGcagagtgaaaaatgagacatttcgTTTCCAAGAATCGTCAGTCTGCATGACAAG--------CGGAGT---ACAGTTTGAAGTGCT--CGACCTTAACgtta------acaatttttataaCGGATATTGGATATTAAGGacttgatgaaaaactgaacatcACATCAAAAACTGGAGAGGATATTTGAATCAAGGAGGAAAAGGAAGTGAGCAAACTATTTCCGGCTGA---------GGGAGGGaccgagaaaagaaaaaaaagattttcgacTTCTTTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3509295 228 - 33334924 -----ttgcttca------------ataaac-----tgtttttg----aatttttttaaaccgTACAATAATGCTTGCAACGTAAAATATGAAACGTTCCGCTTCCAAGATTCATCAGTCTGCATG-------------TTGAGT---TCAGTTTGAAGCA-T--CCACCTtaattcca--------tattttttaaa-------------tcaaaatattatcagagagaaggaaaaaatattgagc-------------------------aaaaaaaTG---------ACCTATTTCCGGTTGG--------TT--------------------GAATAG---ttggatttttttg
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold54      203260 225 +   258924 ----------------------------------tatttttttggaacgagattttttaaacatacaACAATGCTTGTAAAGTAAAAAACGAGACATTCCGTTTCCATTCTTCGTCAGCCAGCATCACCAG--------CGCTGT---------TGAACCA----CTCTGTCAAtat----------gctttttttta-------------ttatgaaCA------------ATCTGTTACAGTTGGTCA-----------------------AGGAAAATGA------------GTTTCTAGATAAAAAAGTTTTGTGAGcattagag--------aaaaaaattacaaattttt-tg
i caeJap4.Scaffold54    C 0 I 584
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=12828.000000
s ce10.chrX               735824 130 + 17718866 CAAGGGCGGGTTCG--AATTTCTGAGTGAAAA-TTGGAAATCTAGCAGTG-ACGATTGCGTGTTGAGAATTGGTGA--TTTGTAGTGTGGTAGGTG--TAAAAAGGAGCAAAAAAGGAGGAAGTCTACATCATT-----TTTT-
s cb4.chrX              21191482 139 - 21540570 cAAGGGCGGGTTCGcaaatttttttaagaaaa-aagaacttgAAGGCTTGCGAGATTGCGTGCT-TGAATTAGTGA--GAACTAGTAGGGTAGGTGACGAAAAATTGTGAAGAAAAGAGGAAGTCTAAACttcttgaacattt-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   508428 122 -  1162296 CAAGGGCGGGTTCG-AAATTATTCGGAGAAAA--------TGGAGTATTG-GAGATTGCGTGCT-AGAATCAATGATTTGTCATGTGTGGTAGGTG--GAAAA---GGGGAAGAATAAGGAAGTCTACATcact-----attt-
i caeRem4.Crem_Contig24 C 0 I 566
s caeSp111.Scaffold629   3509523 124 - 33334924 caaGGGCGGGTTTTGGAtttatgatgaaaaaaggagtaTCCGGAGAGTCG-AAGATTGCGTGCG-AGAATCAATGA-------TTTGTAGTTAGGG--TAAAG---Aaggaaataaatgaatggctacatcatt------tttg
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I

a score=-3654.000000
s ce10.chrX               735954 118 + 17718866 ---AAAGTTCAT----------GAAATGGAAAATACAAATCATTTCTAAGTAAT---------TTAATGTGTGTTTTCAGAATATCCCGAATTTTTAAAAAAGTCCAGAATTTTCTAGGTTTT---TTTAGAAACTGAGATAA-------------
s cb4.chrX              21191623 110 - 21540570 ---caagtacat--------tatacctgaaaaatgcaaaatggctgtgagtttt---------caattttgtttctcTTCTACA--------TTTCATGTCATGCTTTtaaggtttgaaattt---tttaaa--ctgagACAA-------------
i cb4.chrX              I 2 I 410
s caeSp111.Scaffold629   3509647 141 - 33334924 gaagaagaacatgGGAGAAATAGACCTG--------AAATTGGGTCTGACTGTTACAGagtcaaaaattcatagCTTATTTGTa--aggaattttcaaaaaaatctatgaAGTTATAAGTTTTCGGTGTAAA-----AGGCAAGatttccggtgaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e caeRem4.Crem_Contig24   508550 566 -  1162296 I

a score=511.000000
s ce10.chrX               736072 13 + 17718866 AAAAATAAATATT
s caeSp111.Scaffold629   3509788 13 - 33334924 aaatgcaaatttt
i caeSp111.Scaffold629  C 0 I 294
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21191733 410 - 21540570 I
e caeRem4.Crem_Contig24   508550 566 -  1162296 I

a score=0.000000
s ce10.chrX               736085 903 + 17718866  
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21191733 410 - 21540570 I
e caeSp111.Scaffold629   3509801 294 - 33334924 I
e caeRem4.Crem_Contig24   508550 566 -  1162296 I

a score=713.000000
s ce10.chrX               736988 76 + 17718866 AACTTAAAAAGCCTTAAAATACAAAACACAAAGATTCGGAGGAAAGGAATACCTATTGAAATTCACGGATGTCCAC
s caeRem4.Crem_Contig24   509116 61 -  1162296 AACTAAAGTGAGTTCAGAATACCAGGGGcataatttcaaaagaaa---------------attcaagaatgcTCTa
i caeRem4.Crem_Contig24 I 566 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21191733 410 - 21540570 I
e caeSp111.Scaffold629   3509801 294 - 33334924 I

a score=-394.000000
s ce10.chrX               737064 26 + 17718866 --ATTTGTCAGTTTTTTTGTTGTTAAGC
s caeRem4.Crem_Contig24   509177 26 -  1162296 gttctttccttttttccttctcttcc--
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold629   3510095 25 - 33334924 --attttccaCTTCACATTTTGTTAAG-
i caeSp111.Scaffold629  I 294 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21191733 410 - 21540570 I

a score=37408.000000
s ce10.chrX               737090 292 + 17718866 TTTTCAAG---------GAAAGGGGCGCGCCTAGACAAGAGGAAACACAAAACTCAATAGGTTTTCGAGGTAACCCTC-------------------CCTATTCAGTGAATCCATTTCTTA-GGCTCCT---AACGTGAATGAATAATGCAACCGTTTTCTCGTCTTCTTTTTCCCATTTTTGGAGGTGTCGAA---------------ACTTTTTTTTTCTCACCGTTTTTTAATAATACATGA-----GACGCGGACAATGGCACTAATTTCGTTCAAGTTTTGGGGGCGCGG-GTCTATTCA------GGAAGAAAAAGGCGAATCAGTTCTTTTCATGGGTATTCAT----
s cb4.chrX              21192143 315 - 21540570 TTCTTAAGAATCGAAACGCGCGgaat--------atataaaaaaagtcaaaactcAAC--GCTTTTAAGTTTCTCTTCTCTTGCTCTTTACTTTCTCCTTTGTAGCTGAATATATTTCTTA-GGCGTT----AGTGAGAATGAATAATGCAACTT-----TCGTCCTC-----TC-TTTTTTGGAGGTGCCGAACCGAAGAAACACACAaccctttttttctcaccgTTATTAAATAATAGATGA------GTCAGGCCAATGTCACTAATTTTGTCCACG-TTTGT-TTCGGT--TTCTATTCATTGAACGCAGtaaacaagaagaaaagttCTTTTAGGGAGCATTCAT----
i cb4.chrX              I 410 I 1133
s caeRem4.Crem_Contig24   509208 299 -  1162296 ttttcaag--taaaaaagaaaaaaac--tcctAGACAAGAGGAAACACAAAACTCAAT--ACTTCTTAGGTTCTTctcctctcctttt---------cttcGT-GCTGAATCTATTTCCTAGGGCGCT----AGTGTGAATGAATAATGCAACCT-----TCGTCTTC-----TCGCTTTTTGGAGGTGTCCAAac-------------actccttttttctcaccgTCATTAAATAATACATGAA----GACGAGGACAATGGCACTAATTTCGTTCGGG-TTTGTGGGCGCT--CCCTATTCATTGG--GGTTTGGCGGGGAAGAAAAGTTCTTTTCAAGGGTATTCAT----
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3510120 294 - 33334924 ----------------TGaaaaaaaG--------GCAGTAGGCAAGAAGAAACACAAC--TACTTCTAGgttattctctttctccttt----cttttcttaccCTCTGATTCTATTGCTTA-GGAGCCTAGAAGTGTGAATGAATAATGCAACCG-----TCGCCTTc-atcttccttttttggagGTGTCGaaac-------------acac-ttttttctcaccgCCAGTTAATAAAACATGAGTGCCACTGAGGACAATCGCACTAATTTTGTTCGAG-TTTGTGGGCGCCGACTCTATTCATTG---Gtatta------aatgaaatttttctcatgcGACGtttaataaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I

a score=1642.000000
s ce10.chrX               737382 53 + 17718866 ---TCAGAAAGTTCTGATGATCAAGCTGAACTTCTGAAAATTATTAACTAAGAAAA-
s caeRem4.Crem_Contig24   509507 51 -  1162296 ACTGAGAAAAATGCTGATGATCAGAGTGATCTTT------TGGGGTATCTAAAAGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3510414 53 - 33334924 ---agaaaaagtttcaatggTCACACTGAACCTCTCAGAGTcggaaatcgaaaaga-
i caeSp111.Scaffold629  C 0 I 194
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I

a score=168.000000
s ce10.chrX               737435 4 + 17718866 TGCA
s caeRem4.Crem_Contig24   509558 4 -  1162296 AGCA
i caeRem4.Crem_Contig24 C 0 I 374
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeSp111.Scaffold629   3510467 194 - 33334924 I

a score=0.000000
s ce10.chrX               737439 771 + 17718866  
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeSp111.Scaffold629   3510467 194 - 33334924 I
e caeRem4.Crem_Contig24   509562 374 -  1162296 I

a score=3530.000000
s ce10.chrX               738210 160 + 17718866 TTCCGTGAAATGAA---AAATTGAACAAGGAGGATTAATTGGATCACAAGAAAATAAAACTTGAAGCTCTGGAACGGAACGTTCGATCTTTGAG-----CCATACACGAGGAAACAGCGGAGAAATGTT-----CAGGAAGATATTGTCAAAATATGACGATGTATAAGAAGC
s caeRem4.Crem_Contig24   509936 159 -  1162296 ttccaaaaaatgaagtcagataaaacgaaaag------ctgcaacaaaaaaaacaaaaccctaaaacT----GGTGGAACGCTAGATCTTTAAGGGGTTCTTTGAaggaggaaattg----aaaatattttcttcatgAAGACATAATCAAAATATGAcgacggagaagaaga
i caeRem4.Crem_Contig24 I 374 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeSp111.Scaffold629   3510467 194 - 33334924 I

a score=2108.000000
s ce10.chrX               738370 97 + 17718866 AGGAGCAGAATAAAAAGCAAAAAAAATAAACGGAG-AAAAAAGCTGAAGCTCTTCTAGC----------AATC-GATCTTGACGTGTGGAAGGAGAGGAGATGAGGACT
s caeRem4.Crem_Contig24   510095 71 -  1162296 -----------------------aaaaagcagGAGCAAAAGAGCT-------TTCTGGAC---AGCAAGAATT-GATCTTGACATGTGGAAGGAGATg----gccaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3510661 97 - 33334924 agaagacgaatattacaaaaaaaggaaagcaGAAG-AGAAGAGCT-------TTTTGGCCGAGAACGAGAGTCGGATTTTAACATGGAAAGAGAGGGA----GCGGAAA
i caeSp111.Scaffold629  I 194 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      203485 584 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I

a score=22023.000000
s ce10.chrX               738467  99 + 17718866 AAAAAATAAATATCAGCAATATAAATTAGGAATACGGGAATACCAGAAACGGCAGAA--------GCA----TGTCATGGGC---------CCCTCAACCAATTAATGATTTATTCATTT
s caeRem4.Crem_Contig24   510166 102 -  1162296 aatatatacgTATCAGCAATATGAATTAGGAATACGGGAATACCAAAATGGGGCAAA--AACATGGCA----TGTCTCGGAC------------CAAGCCAATCAatgatttattcattt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3510758 114 - 33334924 AATATACACATATCAGCAATATAAATTAGGAATACGGGAATACCA----TGGAAAAA--CATATAGCATCTGTGTCTTAGACGTCCCCTCCTCTTCGACCAgttaatattttatttattt
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      204069  98 +   258924 aaaaaaaacgtattagC--TATTAATTA-AAATATGGG-TTACTagaaatggagaaaaaaacataGCA----TGTCTTGGGC--------------AACCAATTAATGACTTATTCATTT
i caeJap4.Scaffold54    I 584 I 444
e caePb3.Scfld02_62        40509 9198 +   783054 I
e cb4.chrX              21192458 1133 - 21540570 I

a score=1045.000000
s ce10.chrX               738566 225 + 17718866 TGC--AAAAACAC------CAACGGA------------------------------------TTGGA--------GCCCC----CAGATGTCCGCCG-----TTTTGGCGATCCTTACTAGATATCGAAAGCCAAAA---------TCTCCGTT-----GCAAAATTTTTGTGAAAACAAAAAAAAGGAAGACAAGAAAAA------ATGAAAAAGC----------TAAGTGCTTTTGGAACCA-------GGAAAAATGGAGAGTACTCTCAAA-----CCAAA---------------ATGACACAAAAAGTGAAGTGTTTT-----------GGGGTTGG--ATTCAAGATT-----
s caeRem4.Crem_Contig24   510268 316 -  1162296 tcc--aaaaacagcGGACCCAAAAGATGTttgtctttc----attttt--------------cttta--ttcttgGATTCTTTTCCGATGTGAGTTGAGATTTTACCCCTAACCTTCCGAAAAGGtaaaagttgcaa--aaatgtttctccttttttgtgaaacatcTTCCTGAACGGAACAAgggaaggaaatgaaaaaa---------gaaaagcgtTATACGTTTGAGTGGTTCTGGGACCgacaaaacgagaaaaatcaCAGCATACTCAAG-----CCGAAATTTCGTCGTCGTCGATGACATGGAAAGTGAAGTGTTTTTCTTGTCtagaaaatttgg--attcaCGATT-----
i caeRem4.Crem_Contig24 C 0 I 384
s caeSp111.Scaffold629   3510872 332 - 33334924 tcccaaaaaaccccGGA--AAACTGGCGTTGGtgttcttgaaatttttttttagaaatacaATTGGAGTTTCTTGGATTC----CAAGTACAggttcacttttttttacaaaaactc--aaatagGAAGAACCGGAACGAAATG---------------GCAATATCGCTTTGAACGgaaaatcggggaaaattgtaaaaaagcgaaaagaaaaagtgttacACGTTTGAGTGGTTTTGGAAccg----aatagaaaaaatcaaggaaTACTCGAGCCCTCCCAAAATTTA--CGTCGTCGATGACATGGGAAGTGAAgtatttttcctctcttccagGGTTAGCAAATCGCGAAAAGAca
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I

a score=872.000000
s ce10.chrX               738791 220 + 17718866 TGTGAGAGGAGAA----ATTAAGTTTCTAGAGGAGAA----------------TCTGATTTTGGGTACTAAATAGTTGATAACACAATAGTGTAAATAGTGTAAATCTTGAAAAAAACTACTTCAATGTGTACTTGGAAAAGTA-GCT--CCT-------AAAGTAGGTCAAAAATTTTTTCAGCAAAATGTTTGTGTTTTAGGGTATAGAAGATTTTT-----GGAAAAGTTGGAAAATTTTTCTCAAATGTGA
s caeSp111.Scaffold629   3511204 239 - 33334924 tagaaaataagaagaacaTTCAGTTT-TAGAGTTGAGTGAggtttttctggtttctcattttgtgGTCTTCATATTTCCTA----TATTAtcttaatagaaaaaatttttggaaaa---atttcaagatatA---GCAAAAATGTGCTAACCttattagaaaaatggttttcaaattttt-----aaaagatcaATCTACTGAAATAAACTAGAtgttttcatagaaaaagttgaaacaCTATTCACCCatgcaa
i caeSp111.Scaffold629  C 0 I 13
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeRem4.Crem_Contig24   510584 384 -  1162296 I

a score=0.000000
s ce10.chrX               739011 447 + 17718866 AAAGAGAAGTAAACGTGAGCTTCTGCACAAAGCTAATAATTCAAATCCAATCCGTAAAATTTTAGTTACGTAAAAGAAAAATTGAACATGGTTTGTTACAACCCTGAATTAAGATTCTAAGCCTATGATTAGAAATTCAAGCGGGGTTTGTGTACACTACACattaaaaaaaaaaaaatttttttcattttttCGAGAAGACTGAAACTCTTGAAAACAGGTTAATTCACGGATTAAAAAAAGTGATGTCTTGATCATTCAATGTCTAGTGAAATATTTAATTATCAGGAAAGTTAAAACTTTTTAAAGCTGATTTACAGTAAATTTTTGGTTTGAAATTACAGTAAATTATTGTGTCATTTTGCTTGTAGAAACCTATAGTAGTTTGTTATATGTACGTGTCATACAAATAACATTTCAAAAAGTGAAGGTGCTATGCTTGCTAAA
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeSp111.Scaffold629   3511443  13 - 33334924 I
e caeRem4.Crem_Contig24   510584 384 -  1162296 I

a score=716.000000
s ce10.chrX               739458 57 + 17718866 TTTCCAAAAATAAGTGGGGG---------GGGGGGGGGGTGACT-AGAAACTAGGTATGAAC------AATCT
s caeSp111.Scaffold629   3511456 73 - 33334924 tttctcaaaaaaagtaggGAACCCTTTTTGAGGGAAGAGTGAATCAAAAGTTTGGTGTTAGCCGACTAAAtaa
i caeSp111.Scaffold629  I 13 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21192458 1133 - 21540570 I
e caeRem4.Crem_Contig24   510584 384 -  1162296 I

a score=1689.000000
s ce10.chrX               739515 12 + 17718866 ATGCAAAATAAC
s cb4.chrX              21193591 12 - 21540570 atgcaaaactaT
i cb4.chrX              I 1133 I 7
s caeSp111.Scaffold629   3511529 12 - 33334924 atgcaaaaattt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e caeRem4.Crem_Contig24   510584 384 -  1162296 I

a score=6400.000000
s ce10.chrX               739527 46 + 17718866 ---------TAAATATTCATCCAA--AATGAATATATTGCA--------TGTTCATCAAAT-ATTC
s cb4.chrX              21193610 53 - 21540570 ---------TGAATATTCATCTCGTCCAAGG---TTTTGCATATCTGTATGTTCATCAGTA-ATTC
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   510968 50 -  1162296 ---------TAAATATTCATCTCG--AAAGT---TTTTGCATATTTGT-TGTTCATCAGTA-ATTC
i caeRem4.Crem_Contig24 I 384 C 0
s caeSp111.Scaffold629   3511541 57 - 33334924 ttcttcgcgCAAATATTCATCCAT--CAAGT-TCTTTTGCATA------TTTTCACCTATATATTC
i caeSp111.Scaffold629  C 0 I 38
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I

a score=-701.000000
s ce10.chrX               739573 21 + 17718866 CGA--TTTCTAATAGGGGGAACT
s cb4.chrX              21193663 20 - 21540570 AGC--TTTTGGGTCTA-GTAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   511018 23 -  1162296 AGCGATTCGGGGTCAAGGTAGCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e caeSp111.Scaffold629   3511598 38 - 33334924 I

a score=28164.000000
s ce10.chrX               739594 184 + 17718866 TGTGTAGTCG--GCAAA--------TGTCTAACACAATCGCCCAAGGTCCAAACACTAATATGCTCTT------------------TTACCGGGTACACCACAGAG--CGTTGG---------------------------AAGAAAAAAGTGG--------AGAAGC--GGAGGTGAAGTGAAATTGAAAAATTGAAGGAGGGCTTCCCATTGGATTACTTTACAGATTGAATG-GAAAGGTTTTTCT--CGT
s cb4.chrX              21193683 198 - 21540570 ----TAGTCA--GCGAGGTG-----AGTTTGACACAATT-CTCAAGGTACAAACATTAATTTCCTCTT-----------------------AAGTGCACACTAAAGCGTTTTGATAGTGCgcaagaaagagaaaaacaaaaaaggaaaaaaaagagga----atgaGA--ATAGGTGAagtgaaattgaaaac-----ggAGGGCTT-CTATTGGATTACTATACAGATTGAGT--GAAAGG--TTTTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   511041 214 -  1162296 ----TAGAAA--GTGTAATGTGTAATGTCTAATACAATT-CTTAAGGTACAAACACtaatttgctctt---ttttctt------cattttcaagtaCACAC-------TTTTGA------GCATTTAGTAGAGGAAAAGAATAGGAAGAGGAGGAAGGCCGTATGAGAAGAGAGGTgaagtgaaattgaaaac---gagGAGGGCTT-CTATTGGATTACTATACAGATTGAGT--GAAAGGttttttt-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3511636 200 - 33334924 TGAGTAGTCATTTCTGAATA-----AGAATAATACAATT-GTTAAGATACAAACATTAATTCACTCCCggtttttcttattatccTCTTTCAAGTGCACAA-------Cgttta-------------------------aaaagagaaaaaggga-------atgaga--agaggtgaagtgaaattgaaaac---gggCAGGGCTT-CTATTGGATTACTATACAGATTGAGTGAGAAAGGTTTTTTCGT---
i caeSp111.Scaffold629  I 38 I 815
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I

a score=3385.000000
s ce10.chrX               739778 30 + 17718866 GTCTC-------------------------------TTGATTAGGTTCAGCAGAAATTACA
s cb4.chrX              21193881 60 - 21540570 GTCTTAAACGACAATTGGGTTGA-ATGGGGAAATTGTTGATTAGGTGCAGCTCAAATTGCA
i cb4.chrX              C 0 I 197
s caeRem4.Crem_Contig24   511255 58 -  1162296 GTCTTAAACG---ATTGGAGGGAGAAGAGGGAAATGTTGATTAGGTGCAGTTAAAATTACA
i caeRem4.Crem_Contig24 C 0 I 671
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e caeSp111.Scaffold629   3511836 815 - 33334924 I

a score=0.000000
s ce10.chrX               739808 1889 + 17718866  
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167  444 +   258924 I
e cb4.chrX              21193941  197 - 21540570 I
e caeSp111.Scaffold629   3511836  815 - 33334924 I
e caeRem4.Crem_Contig24   511313  671 -  1162296 I

a score=422.000000
s ce10.chrX               741697 15 + 17718866 AAAGAAAAAAGGACT
s caeSp111.Scaffold629   3512651 14 - 33334924 aaggaaaaaaggga-
i caeSp111.Scaffold629  I 815 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21193941 197 - 21540570 I
e caeRem4.Crem_Contig24   511313 671 -  1162296 I

a score=0.000000
s ce10.chrX               741712 2 + 17718866 AT
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I
e cb4.chrX              21193941 197 - 21540570 I
e caeSp111.Scaffold629   3512665 0 - 33334924 C
e caeRem4.Crem_Contig24   511313 671 -  1162296 I

a score=22098.000000
s ce10.chrX               741714 85 + 17718866 AATAAAGAAAGGATACATTGAGTCAAAA----GATAGCTCATAACTTAGTC-CTGCTCACA-TAACCCGTAGAAGATATCAAAGGAAAACG
s cb4.chrX              21194138 81 - 21540570 aaaaaagaaaatatgcaTCGAGTCAAAA-------GGCTCATAACTTAGTC-CTGCTCACA-CAACCTGAAGAAGATATCAGCATGaagc-
i cb4.chrX              I 197 C 0
s caeRem4.Crem_Contig24   511984 80 -  1162296 aagaggaaaAAGATGCATTGACTCTAAAAAGGCGTAGCTCATAACTTAGTC-CTGCTCACA-TAACCTGAAGAAGATATCAG---------
i caeRem4.Crem_Contig24 I 671 C 0
s caeSp111.Scaffold629   3512665 76 - 33334924 --aatgtAGAAGATGCATTGAGTCAAAA----AGCAGCTCATAACTTAGTCTCTTCTCACAGAAACCTGAAGAAGATATCAg---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I
e caeJap4.Scaffold54      204167 444 +   258924 I

a score=14230.000000
s ce10.chrX               741799 70 + 17718866 GCGTGGAGGAAAGAAG----GGGAAAAAATGA---GAGAAAGTGAGCTGGAATAAC------TGAGAAGGG--GGGGGGGGTGTA
s cb4.chrX              21194219 69 - 21540570 -------aagaaaaag----aaaagagaaagg---aggaaagtgagctggaataacgttttataaagcaaa--aaagagggtata
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   512064 74 -  1162296 --------GGAAAACgcattgagagaaaaagg---gagaaagtgAGCTGGAATAACTTTTCATaaagaaaatgtaagggggtata
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold629   3512741 68 - 33334924 --------gaaaagtg----agagaaagaaaa---aggaaagtgagctggaataactttttataaagaaga--aaagggggcaga
i caeSp111.Scaffold629  C 0 I 6
s caeJap4.Scaffold54      204611 55 +   258924 GCGTAAACTAAAAATG----GAGCAAAGATGGAATGAGAAAATAAATTGGAATAACTTT--------------------------
i caeJap4.Scaffold54    I 444 C 0
e caePb3.Scfld02_62        40509 9198 +   783054 I

a score=76040.000000
s ce10.chrX               741869 167 + 17718866 CAGAAAAAGTGAAGAAGTAGG-----------AAAAAGAGCGGGGGTATTCTAATATCACTTGAAGAAGTCATC-CTTCT------ATAGACTTCTAAAATTGAATCATAACTTTAAGCCCCTAGAGCACTTAAA------------ACATATACG---TCCCCAATTTATGCAAAACGTTTTCCTTCCGTGTC----CCCCTT
s cb4.chrX              21194293 180 - 21540570 aaataaagg-gaaaaagttggaaaa-------aggaagggC-GGATTCTTCTAATATCACTTGAAGAAGT-----CTTCCGCCCCGATAGACTTCTAAAATTGAATCATAACTCTTCT---GCGTAGCCCTTGGAACATGCGCATGCACATACACGGCGCTCTAGATTTATGCAAACTTTT---CTTCCTCGTC----CTTATT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24   512143 180 -  1162296 gaagaaaag-aaaaaagtcgaagaagtaggacaaaaagGGC-GGGTTCTTCTAATATCACTTGAAGAAGTCATCCCCTCCTCTCCCATAGACCTCT-AAATTGAATCATAACTTCT------TGGAGCACTTGGA------------ACATACACTGCGCTCCAGATTTATGCAAACTTCT---CTTCCTTGTCCCCGctcgtt
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3512815 168 - 33334924 aagaagtagtaaagaaggaggagga-------ggaaagggCGGGTTCTCTCTAATATCACTTGAAAAAGTCATC-CTT-TCTCCGGATAGACCTCTAAAATTGaatcataactttttt--ggcAAAGCACTTGGA------------ACATAGGCT---TGCCAGATTTATGCAAAATTCT---CTTCCGTGTC----CTT---
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_62        49707 168 +   783054 agaaaatag-aaagaagacg------------agaaagGGC-GGTTTTTTCTCATATCACTTG-AAAAGCCATC-CTTCTCTCTAGATAGACGTCTAAAATTGAATCATAACTTTTT----GCGTAGCACTTGGA------------ACATACACTGCGCTCCCGAATTATGCAAAATTCTTAGCTTCCGTGTC----GTTGCt
i caePb3.Scfld02_62     I 9198 C 0
s caeJap4.Scaffold54      204666 152 +   258924 CAGAAAgaataaagaagaa-------------aaagagagcAGCGTCTTTCTAATATCACTTGAAGAAGTCATC-TGTC-------ATAGACTTGTAAAATTGAATCATAACCTCG----------GCACTTGGA------------ACATATCCT--GCCGCCGTTTCATGTCAATTTTT---CTTCCGTGCC----GTACTT
i caeJap4.Scaffold54    C 0 I 73

a score=-1670.000000
s ce10.chrX               742036 14 + 17718866 TTTTT--------TGAGGAAAA
s cb4.chrX              21194473 22 - 21540570 TTGCCtagaagaatgagaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   512323 22 -  1162296 tctcttttcattctgagaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3512983  6 - 33334924 -------------TGAgcg---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        49875 14 +   783054 --------ggatatgaagaaaa
i caePb3.Scfld02_62     C 0 I 713
e caeJap4.Scaffold54      204818 73 +   258924 I

a score=595.000000
s ce10.chrX               742050 29 + 17718866 GCTGAGGAAAATAAAGAAATAAAAGAAAA-
s cb4.chrX              21194495 25 - 21540570 ----aagaagagcaagCAGATGAAGAAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   512345 24 -  1162296 ----ggaaaaag-aagaaaagaacgagaa-
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3512989 17 - 33334924 -------------aaagaaagaaaaaaaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I

a score=398.000000
s ce10.chrX               742079 4 + 17718866 ---TGTT
s cb4.chrX              21194520 7 - 21540570 CATAGTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3513006 4 - 33334924 ---cgtt
i caeSp111.Scaffold629  C 0 I 11
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I
e caeRem4.Crem_Contig24   512369 1 -  1162296 I

a score=498.000000
s ce10.chrX               742083 10 + 17718866 GAACTTTATG
s cb4.chrX              21194527 10 - 21540570 CAAATTTATG
i cb4.chrX              C 0 I 8
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I
e caeSp111.Scaffold629   3513010 11 - 33334924 I
e caeRem4.Crem_Contig24   512369  1 -  1162296 I

a score=0.000000
s ce10.chrX               742093 577 + 17718866  
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818  73 +   258924 I
e cb4.chrX              21194537   8 - 21540570 I
e caeSp111.Scaffold629   3513010  11 - 33334924 I
e caeRem4.Crem_Contig24   512369   1 -  1162296 I

a score=677.000000
s ce10.chrX               742670 38 + 17718866 AGTTGAAGATAGATGTCTAATAGTTTTAATATTACAAG
s caeRem4.Crem_Contig24   512370 33 -  1162296 agTTTAGGATAGGGGC--AAAAGTT---ATGTGGCAAG
i caeRem4.Crem_Contig24 I 1 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I
e cb4.chrX              21194537  8 - 21540570 I
e caeSp111.Scaffold629   3513010 11 - 33334924 I

a score=-313.000000
s ce10.chrX               742708 15 + 17718866 CAATAGTTAGTAGTA
s caeRem4.Crem_Contig24   512403  8 -  1162296 ----TGTTAGCT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3513021 15 - 33334924 CGAAAGTTATTTGTG
i caeSp111.Scaffold629  I 11 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I
e cb4.chrX              21194537  8 - 21540570 I

a score=600.000000
s ce10.chrX               742723 1 + 17718866 G
s cb4.chrX              21194545 1 - 21540570 G
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig24   512411 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3513036 1 - 33334924 G
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204818 73 +   258924 I

a score=18488.000000
s ce10.chrX               742724 64 + 17718866 TATTCTGATTGATTGCATTTCTAATTGAAACGAAAAGCG--------GCTGAGTATGAAGAAAAACAAGAAA
s cb4.chrX              21194546 60 - 21540570 TATTCTGATTGATTACATTTCCAATTGGAACGAAGGAA------------GTcgacgaaaagaaaaaagtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   512412 56 -  1162296 TATTCTGATTGATTGCATTTATAATTGGAacaaaaga----------------gatagaaaaaaacaagtga
i caeRem4.Crem_Contig24 C 0 I 60
s caeSp111.Scaffold629   3513037 64 - 33334924 CATTCTGATTGATTGCATTTATAATTGAGACAAAAAGAc--------gttgaaaattgaaaaaaacaaggag
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold54      204891 67 +   258924 TATTCTGATTGATTGCATGGGTAATTGAAAAGAATAGCGTAGCGTCAAAACAATTTCGAATAAAGCA-----
i caeJap4.Scaffold54    I 73 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I

a score=-1040.000000
s ce10.chrX               742788  8 + 17718866 TAAAGTAA---
s cb4.chrX              21194606  8 - 21540570 catGGTGA---
i cb4.chrX              C 0 I 1590
s caeSp111.Scaffold629   3513103  8 - 33334924 CAAAACAG---
i caeSp111.Scaffold629  I 2 C 0
s caeJap4.Scaffold54      204958 10 +   258924 -TAAATGATAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeRem4.Crem_Contig24   512468 60 -  1162296 I

a score=584.000000
s ce10.chrX               742796 3 + 17718866 AAA
s caeSp111.Scaffold629   3513111 3 - 33334924 GAA
i caeSp111.Scaffold629  C 0 I 792
s caeJap4.Scaffold54      204968 3 +   258924 GAA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeRem4.Crem_Contig24   512468 60 -  1162296 I

a score=613.000000
s ce10.chrX               742799 12 + 17718866 AAAGAAAGCAAT
s caeJap4.Scaffold54      204971 12 +   258924 AGAGAAAATagt
i caeJap4.Scaffold54    C 0 I 1471
e caePb3.Scfld02_62        49889 713 +   783054 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513114 792 - 33334924 I
e caeRem4.Crem_Contig24   512468 60 -  1162296 I

a score=0.000000
s ce10.chrX               742811 25 + 17718866 CCCGAACACAATTCAAAACTACAAA
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513114 792 - 33334924 I
e caeRem4.Crem_Contig24   512468 60 -  1162296 I

a score=206.000000
s ce10.chrX               742836 275 + 17718866 CAAAATTGAACT----------CCTTTCTTAGAAAAT-----AAAAATTCCGAGAAATTGGGTACTTGTACGAATATAAAAAAAGTATGTGAG--CGAGAAGTACGATTTT----GTTTTGAACAACGTTTTTGAGTATCTATT-----------TCCGAATACC-TATTTTTTCTGCTCAAAAA-----------------------------CCAAAGTGA--------------------------TGTGCATATTTTTGCCTGGGA------AAAACTC-TATTTCCTGT-----GTGGAAATAGGTT--GATTCCTGGAATGGAAAACTCGAGCTGTTGCCGACTTTAAACAAAATTCCAGCTTTTGATCTT
s caeRem4.Crem_Contig24   512528 347 -  1162296 CAAAGTTTAcctgtttttcttatttttcttgagaaaTTGAGACAGAATT----GAAATTGACTAAGAGTGC---------AAAAGTGTGGGAGACcttgaaaaacagttttttgggtttcaaaa------tttgaatattcattcttttcatttattcaaacactgcattatttttaaacaaaaatatcaaacaccgtttaaattgaaaaagccctaaagttaaaaaggctgaaataaaCTACTCACATCATTTATTCTTTTGCTCAATaatctccaaaattcaaatttcctgttgaaaatggaaatgaaataaaatttc-----tggaaaactcAACCTTTCgttaactc--aaaaaaat----gattttgatatC
i caeRem4.Crem_Contig24 I 60 I 38
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513114 792 - 33334924 I

a score=0.000000
s ce10.chrX               743111 30 + 17718866 TTTTCAAACATCAACCTATCAATGAATTTT
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513114 792 - 33334924 I
e caeRem4.Crem_Contig24   512875 38 -  1162296 I

a score=-9.000000
s ce10.chrX               743141 47 + 17718866 TACTTTCAGATTCAAATTGGA---GCAAAGCACAA--AATTTAGATTGT-----TTG
s caeRem4.Crem_Contig24   512913 57 -  1162296 tACTTTcccacaaaaaatcaacacaCAGAGTACaatgaaatcattttgtttcaattt
i caeRem4.Crem_Contig24 I 38 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513114 792 - 33334924 I

a score=6177.000000
s ce10.chrX               743188 32 + 17718866 ACAAATTGACTGACGCTCTTTTTATTTGATTA
s caeRem4.Crem_Contig24   512970 32 -  1162296 acTAATTGACAAACGCTCTTTTTGTATAATTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3513906 32 - 33334924 actAATTGATTGGCGCTCTTTTTATTCGATTA
i caeSp111.Scaffold629  I 792 I 200
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I

a score=1290.000000
s ce10.chrX               743220 174 + 17718866 AG----AGAACAGCAAAAAATATCCCACTTCCGGATTTGGTGGTTTTGCAAACGAAAAAACCA--ATTTGTGAAAAGAATTGTAAAATTGTTTCTAGAAAC--------------------------AATAAACACCAAGTTAGAAAAACACAAATGATATTGACACGAGTGAGAAAATATTCAACTCCCAGATTTTTTACTTTTC
s caeRem4.Crem_Contig24   513002 194 -  1162296 AgttgaaagaaagagaaaaagcaaaCACTTCCGGATTTGGTTG------GAGCGAGTCAGATAGTGTTCATTAAATGATTTgtctggtt-tttttgaaagcgTGTTAACCAAATAAGAGAGCAACTGAATCAACACTACATCAACAGAA-ACGGATGATTTTGACAAGAGAGGGTAGCCAgtcattt----gttttctttgttttc
i caeRem4.Crem_Contig24 C 0 I 13
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513938 200 - 33334924 I

a score=0.000000
s ce10.chrX               743394 833 + 17718866  
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513938 200 - 33334924 I
e caeRem4.Crem_Contig24   513196  13 -  1162296 I

a score=748.000000
s ce10.chrX               744227 34 + 17718866 AAGTTGATGATTAAAATATTAGAAA------ACAGAAAGT
s caeRem4.Crem_Contig24   513209 40 -  1162296 aaattaattgttatATTCctagaaattttccaaaaaaaat
i caeRem4.Crem_Contig24 I 13 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3513938 200 - 33334924 I

a score=5292.000000
s ce10.chrX               744261 169 + 17718866 GTATTTTGAATTTCCACTGCA---AAGTCGaattatttttgatttgtttttttaatataaataataGTCATTAAAACACACCGTCCAAGAAATTCGTCAATCCCAGCCGCCGATGTAGTTGAAATGACGGAGGTCGTCGGTTCCGTGATGGAAGTCGGATGCTTCATGAGAA
s caeRem4.Crem_Contig24   513249 162 -  1162296 ------t--attttagaatCAAACCTGTCCAACAACTTTTCAACCATCTGCATAAAATAATCCGTGG--ACAAAAACTCACCTTTCAATGCCCGAACTGATTTCCGCCGTTGCAGTTGTTGTCGCAACTGACGTTGGTTGCTCCGTGAACGAAGACAGATACTTCATGAGAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514138 155 - 33334924 gtaatCT--ATATTTACATCA---caattaaaacatttttcatgcTTCGGTTTCA----------GA--ATTACTACTCACCGTTCAATTTCTTCGACTATTCCTGTAGAAGCAGCTGTCGATGTGGCCAACGTGGTCAGCTGAGTGAAAGTGGAGAAATACTTCATGAGAC
i caeSp111.Scaffold629  I 200 I 22
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I

a score=-581.000000
s ce10.chrX               744430 15 + 17718866 GAAGCGAGTCAG--AAG
s caeRem4.Crem_Contig24   513411 16 -  1162296 AACG-AAGTCGGGTATC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I
e caeSp111.Scaffold629   3514293 22 - 33334924 I

a score=910.000000
s ce10.chrX               744445 193 + 17718866 CTGAGGTCAACCTCAACGTAGACTAAC-TTCTTGTTAACGTAATTAAAAAAGTGCCTTTCCCTGAAAATTGTGTTAGGTTAATGA-----------------------------TGGGCTTGTTCCTAAAATAAAACACCAAAGAAGAAGTTATGAAGTTTTTTTTTC------TTGTTCAACAAAAAATCTAAATTTTGACGGTAAACAG-AA-AACAAAGTTTC-GAATT
s caeRem4.Crem_Contig24   513427 202 -  1162296 CGGAGGTCA-----AATGCAGACTAA--CTTTTGTTAACAAAGTTAAAA----GCGCTTCCACCAAGCTTGTGGTCtcctaaaaattgagtttgcgTTGTTATATTTAGAACTGTGGGGATAGT-CAAAAACGAATATGGTGAGAAGAAGTTGTGAACTTTGACTTTTCATAATTTAT----------------acaattgagaaaaacaacaa-aacaagatatt-gaatt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514315 168 - 33334924 CCGAGGTC------AATGTAGACTGGCTCtttttttAACAATGTTAAG------------TTCCAAGCTTGtggtcttctgaaaa-----------------------------aaggtatatt-tgaaaacatac-----------aAATTCTGACTTTTTCGTTTCAGTCCTTTGTGTTCCAA-----ccgaaaaatgaggaaaaataataatagcGAGGGGTtcggatt
i caeSp111.Scaffold629  I 22 C 0
e caePb3.Scfld02_62        49889 713 +   783054 I
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I

a score=-14147.000000
s ce10.chrX               744638 259 + 17718866 TCACAATAATAATAATAATGGACGAACAAATGAACT----------TTATGAAAACATGTAAAAAT---ATTA-------------GCTTTTTTACTAGAAAAGACGTGGTTTTCTAAAATTT-GGCCACAAAGTTCTCAGGGACTGAAGGAACTTGCTCTGGGAAAATTAACAATTTTTTGGTGTTGGATTTGGTCA---------AAGAAA--------------------AAAAAAGTGGACCAAC--CATTCT----------------------AATGAACAGCTCAAAATTCAAT-----GAGCACATTGACAAAACATATGAAAATGAGATTTTAAG-
s caeRem4.Crem_Contig24   513629 287 -  1162296 tcagtatgaaaaatata-------aaggtACGAGTT----------GAACAAACATTTg-----at---ctcaaaattctgaaaaatccatATTTAGCTAGAAGACGTGATTTTCAAGACTAT-GGGTACAAAGTTCCCACGGAATG-------TTGCCATGGGAAAGT-------------------AGCGAGATAACCATCTTTCGAAAGGTTCGAAGAAAAGGT------TTAGATGTTCATTCacatgatttttttgagtggCTACCCTTTTCGAAATGAGgggaaaaagtttcaatgaaCAAAACATCATTGAGAAATGAGCAAGGATgagaattcatat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514483 216 - 33334924 tcaaaaaa--------------------------------------caataagatTTTG-----AT---CTCA----CTTG-----TCCATTTTTACCCAAAAGACGTGATTTTTAAGGCTTTCCCATACAAAG-TCCTATGAAGTG-------TTGCCATGGGAAAAT-------------------GTTCTGACAA---------GAGAGGAATCAAATAAAATCAtgatatttcatttgaaccAACATTATTct------------------------taattcgaaaaaaat----------gagaccgatcaaaaaa---atggaaagagaaaaaaaaa-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        50602 220 +   783054 tcaaaaaagtgaaaata-------aacGGAGGAACAACGAAAAGAGTAATGAGAAACAG-----ATTGGTTCA----TT-------Cctatttttattaaaaatacatgattttttttgattt------------tcccatGACATG-------ATTccttgggaaaaa-------------------attttgctta---------aAAAAG--------------------TTTGGTGGTGTCAGACACCa----------------------------tgatttgaaagaaattc------tAGAACCTGTTTCAAGAAGAGATGAGGGGAGGAATAAATA-
i caePb3.Scfld02_62     I 713 C 0
e caeJap4.Scaffold54      204983 1471 +   258924 I
e cb4.chrX              21194614 1590 - 21540570 I

a score=-18527.000000
s ce10.chrX               744897 56 + 17718866 ----------------------GTTT-------------TCATTGAA------AGAAATA-AAAAAAA------TGCGAAGAATGAG--AGATGGAGACGAGCAGT
s cb4.chrX              21196204 53 - 21540570 ----------------------GTTT-------------TGATTGAAATT---TCTATTC-AAATCACAGAAGGaccaaagagagaaaaaga--------------
i cb4.chrX              I 1590 C 0
s caeRem4.Crem_Contig24   513916 27 -  1162296 ----------------------tttt-------------tcattgaaat-------------------------agcGAAGAGAGaa-------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514699 68 - 33334924 gagtttcaatgaacaaaaaaaca----------------tcttTGAGCTGTGATGAGAtagaattttc------attgaaaagacGG--AGC--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        50822 71 +   783054 GTGT---------AGAAAAGACATTTCAttgaacacaattttttgagctg---tgaaata-aatttcc------attgaaaacgaAA--GAG--------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      204983 1471 +   258924 I

a score=61034.000000
s ce10.chrX               744953 66 + 17718866 TTTTAT-GATTTTCATT---AATAACGGTAAGTTTTTGGCAAATATTAAAGTTTCTCTTTTGCTCCTGGC
s cb4.chrX              21196257 61 - 21540570 -------gattttcaTT--AAACAACGGTAAGTTTTGGGCAAATATTAAAGTTTCTCTTTTGCTTCTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   513943 62 -  1162296 --------gttttcatttcgaatAACGGTAAGTTGTGGGCAAATATTAAAGTTTCTCTTTTGCTTCTGGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514767 61 - 33334924 -------GGTTTTCATT--AAATGACGGTAAGTTTTGGGCAAATATTAAAGTTTCTCTTTTGCTCCTGGC
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_62        50893 61 +   783054 -------AGTTTTCATT--AAATCACGGTAAGTTTTAGGCAAATATTAAAGTTTCTCTTTTGCTCCTGGC
i caePb3.Scfld02_62     C 0 I 1670
s caeJap4.Scaffold54      206454 65 +   258924 TTTTATAGATTTTCATT--AAGTAACGGTAAACCTTGGGTAAATATTGAAG---CCTTTTTGCTCCTGGC
i caeJap4.Scaffold54    I 1471 C 0

a score=2145.000000
s ce10.chrX               745019 5 + 17718866 TATGA
s cb4.chrX              21196318 5 - 21540570 GATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   514005 5 -  1162296 GATGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514833 5 - 33334924 AGTGA
i caeSp111.Scaffold629  I 5 C 0
s caeJap4.Scaffold54      206519 5 +   258924 TATAA
i caeJap4.Scaffold54    C 0 I 644
e caePb3.Scfld02_62        50954 1670 +   783054 I

a score=3714.000000
s ce10.chrX               745024 51 + 17718866 CAGCATTGAGAAGCGTTG--------AGTATTATTAGA-AAATAGAAACGAACTCCGTG-C
s cb4.chrX              21196323 47 - 21540570 AGAAATGAATAGAGG-----------AATATTATTGGA-AAATACGAACGAACTTCGTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   514010 57 -  1162296 GGGGGTTTATGGAGGG-ACTAGAAgaaatattatttga-aaattggaacgAACTCCGTg--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3514838 57 - 33334924 GGGGGATGCTGAGGGGCACCACG---AatattattttagaaaaacgaaCGAATTTCGTGC-
i caeSp111.Scaffold629  C 0 I 275
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I

a score=1338.000000
s ce10.chrX               745075 24 + 17718866 GTTTTCTCAAAATCGAATGAAA--------TT
s cb4.chrX              21196370 17 - 21540570 -------CAAGattgaataaaa--------tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   514067 25 -  1162296 -------cagaatcaaaaaaaaaactgaattt
i caeRem4.Crem_Contig24 C 0 I 364
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3514895 275 - 33334924 I

a score=406.000000
s ce10.chrX               745099 23 + 17718866 G-AGAACTGTGAATGGGAGAAAAA
s cb4.chrX              21196387 24 - 21540570 tcaaaattccgaacgaaaaaaaaa
i cb4.chrX              C 0 I 81
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3514895 275 - 33334924 I
e caeRem4.Crem_Contig24   514092 364 -  1162296 I

a score=0.000000
s ce10.chrX               745122 1189 + 17718866  
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524  644 +   258924 I
e cb4.chrX              21196411   81 - 21540570 I
e caeSp111.Scaffold629   3514895  275 - 33334924 I
e caeRem4.Crem_Contig24   514092  364 -  1162296 I

a score=3362.000000
s ce10.chrX               746311 106 + 17718866 TTTTTTTCCTAACAACCAGGAATAAAGTCAGTTACTAAGAGTTGCATGAGAAGAAAGAAGAAAAAAAAACGTATGTGACATCACAGCTAAAGCATA----------CCCTCTTC-------TA
s caeRem4.Crem_Contig24   514456 116 -  1162296 tttgtttcctaACAACCAGGA-----GGCAGTTACTAGGAGTTGCATGTATGGGAATAT--AAAAGAAATGTATGTGACATCAGAATCAAATAAGAAACTATTGTTTTCTCCTCAGAAAAGTA
i caeRem4.Crem_Contig24 I 364 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e cb4.chrX              21196411  81 - 21540570 I
e caeSp111.Scaffold629   3514895 275 - 33334924 I

a score=207.000000
s ce10.chrX               746417  8 + 17718866 -TTCTTC-----CA
s cb4.chrX              21196492  8 - 21540570 -TCCTCA-----CA
i cb4.chrX              I 81 C 0
s caeRem4.Crem_Contig24   514572 14 -  1162296 TTCCTCCATAGTCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3514895 275 - 33334924 I

a score=28947.000000
s ce10.chrX               746425 331 + 17718866 TATATATATTCAACACCTCCGATTTGTG--------------------GAAAAGCAGAAACA-----GAAATCTGATACTATTTGCGCACACCTCTTTCTGTGTTGGTTGGCGCTATAATTATCA-----TCTGGAGGCGCGCAATGTATGATTCGGG-ATGaataataaatgtataatatttttccaaattttatttatataactttttttttattaaaCAGAAAGA-------------AAAACAAAGCGGTGAATTTTAAAAAGCAGAAACAAAGAAGTT------CAGTGTTATTG-TTTTATAAACAT-TGGCC--------------ACACACTCTTAAGAATGCTCCA---------TACGCACATACACACTAG---ACAGATGTGTAAACATTTTTTTAC--
s cb4.chrX              21196500 331 - 21540570 GAGATGTATTCGACACCTCCGATTGGTATAAAAATAGTGAG-------AAAAACTGGGCGCACAATCGAAATCTGATACTATTT--GCACACCTCCTTC----GGGGTTGGTTCCATAATTATCT-------AGGAGACAC--------TTTTTCTGGCGCCAACAAC--ATGTATTAT-----TCTAA-----Attaaaacga---------aaagaaaagtgCAGAGTATCtcagccagaaaaaaaaacaacgaga-----aAACCAG--ACAAAGAAGTTCATCTaca-tgtttttg-ttttataaaCACGGGGCG--------------AGAAACTCTCAAGATGGTTCCATGTGCACACTACACTTAGACGCATCT----GCAGATTTGTAAACAC--TTTTAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   514586 299 -  1162296 GAGATATATTCCACACCTCCGATTGGTGCGAGAAGAAGGGGgagaggaaaaaaatgggagcTC--CCGAAATCTGATACTATTT--GCACGCCTCTTTT-----TGGTTGGCTCTATAATTATCTTTCTCTCTGGAGCTA----------GTTTCGGGCGCCAATGAC--ATG-GTTAT-------------------------------------GAAGAGGggaga-------------aaactaaaacaataagaataagaaactAA--AAAGAGAAGTT------CA-TGTTTTTG-TTCTATAAACAT-AGACC--------------AAAAACTCTCAAGATTGTTCCA---------TACACTCAGACACATGGA---GCAGATGTGTAAACAC-TTTTTAC--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3515170 302 - 33334924 TATCTCCATTCCACACCTccg---------------------------aaagaaagaaagcaA----GAAATCTGATACTGTTT--GCACGCCTCTTTT-----GGTTGGTTTCTATAATTATCT----ATATGGAGACA-------------CCGGGCCCCAACGAC--ATGCATGAT-----TTCGATTTCGATGGAAACGA---------TGTGGATAAGagatg-------------aacaaaaaacaatagaa---------------agaaaaaggt------ca-TGTTATTGTTTCTATAAACAATGGACCCTCCCGGCTGCCATCAAAACGCTCAAGATTGTTCCATGTGCTTT-TACACTCAGACACATATAGACATAGATGTGTAAACAT--TTTCATAC
i caeSp111.Scaffold629  I 275 I 492
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I

a score=-2897.000000
s ce10.chrX               746756 82 + 17718866 ACT-----TTAT----AAAATTTTGGGAAGC----TCATTTTATATAATGTTTTTTTGAATGTCTTTTTTTGTCTAAAAATT-------ACAAATTTCCATT
s cb4.chrX              21196831 89 - 21540570 ACTTTTTCTCATCACAAATAGATTAGAAGGAAAA-TTGTTTCAT-TAAAATAAGAACGTAGTT--------GATAGCATATC---AGTAAGAAGTATAGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   514885 96 -  1162296 ACT-----TCATCACTAAAGAATTAACGCGCAAATTTATTGTGT-TGATGTTCTTGTCtaattatttctgaaatagaagattgaaaataagaaacttttatt
i caeRem4.Crem_Contig24 C 0 I 36
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I

a score=223.000000
s ce10.chrX               746838 45 + 17718866 GTTC----TAATCGAGT---------ATTTGTTTAACTTGTTAATTGTGGTGTTGCGC
s cb4.chrX              21196920 53 - 21540570 GTTTGGTATGATTGATTACGATTAAAATCTGTATAACTGATTAATTGTAACAT-----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I
e caeRem4.Crem_Contig24   514981 36 -  1162296 I

a score=-4928.000000
s ce10.chrX               746883 65 + 17718866 CAGTTG---------AAATCAATTTTTTTTTGAAAACACCAAGAAGAAAATTTTAATGGTGCTTTAAAATTTTG------------------
s cb4.chrX              21196973 23 - 21540570 ---------------AAATCAT---------------------------------------CATTAACTTGTTTTtg---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   515017 92 -  1162296 CAgtcggaactgaaaaaatgattgaactTTCTACACGAACAGACTGACATTATCAGAAGAACATTCTCATGTTTTCGTACATTATAATTAAG
i caeRem4.Crem_Contig24 I 36 I 83
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I

a score=24.000000
s ce10.chrX               746948 83 + 17718866 AAAAAAAGGGGTTTAAGTTT---TTTAAGCTT---ACAGTCTAACTGTTTATTGATTGCCTCTTGGCTCGTACC----TTCTGGAAATAAATG
s cb4.chrX              21196996 91 - 21540570 acaaaaagttgtctagACCTAACATTAAGATTGGAAAAGTCCCCATGTCTAC--ATCATCACTTTCATAGAATCGAAGTTCAACAAACGGATG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I
e caeRem4.Crem_Contig24   515109 83 -  1162296 I

a score=-4374.000000
s ce10.chrX               747031 83 + 17718866 ATCAAAATATGACAATTATTACAGGTGGGAAACTTGAGTCCGTAATGAAACTTCTCGAAAATGTGAT------------------CGCCTTTAAAGCCGAA-------
s cb4.chrX              21197087 82 - 21540570 ---AAACGTTGAcaaatgcc--aattttttttcgagat--agGAATGTCAGTTAG-GAAATCTTGTT------------------CATTATTCAAGTCAAGTTTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   515192 92 -  1162296 ACCACTTTTTCACAACTATCATAAATCATAACCTAGAC----GAttgtaaat-----aatttttgttgtttttgtacTAACTCGAAATCATTAAGGTCGAG-------
i caeRem4.Crem_Contig24 I 83 I 104
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I

a score=-790.000000
s ce10.chrX               747114 117 + 17718866 ATTTGGTTTTTTTTCAAAATTCATACGTTTAAAATACCCGCAACCGTTCTTTAAAAAGTAGGTTTTGCACACAAACTCATTGCAACTGTTTTTCTATTAACCATAGTGATGCCTTAG
s cb4.chrX              21197169  79 - 21540570 ATATGATTTTATATTTAA---------CTTAGAacattcggaa---------aaaaagaaa-------agagaaatccTGAGAAAC-------------AACATAAATGTGTGTTGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I
e caeRem4.Crem_Contig24   515284 104 -  1162296 I

a score=-6490.000000
s ce10.chrX               747231 108 + 17718866 -TTACAGTTAGAA------ACAGCCAAAATACAATCAAATAGTAGAACAATTATTTGAAGTTAAAAAAAAAACTT------------TCAGGAATATGAAATAATACAAA---------------------------------AACATCAACAGTCAGAT
s cb4.chrX              21197248  92 - 21540570 -TTAGAGATGAAATAAGTCGCT-GCACAACACAAGGGGA---------AAGTTGTTTAATTTACCCAAAACATTCTTGAATTTGTTCTCGAGAT-------------------------------------------------AACCATATC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   515388 148 -  1162296 CTCCAAGAAGAAA------ACA-CCAGAATAGAATGAAATCAACG---AAATATGTTGCCTTCCCGAAAAAGCTCATAAAATGGGT-TGGAGAGTAACAACAAGAATTAATCTATTCGAAACAtggatttcctttttcttggTAACCATACCAatcaaa-
i caeRem4.Crem_Contig24 I 104 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e caeSp111.Scaffold629   3515472 492 - 33334924 I

a score=273.000000
s ce10.chrX               747339 1 + 17718866 A
s caeRem4.Crem_Contig24   515536 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3515964 1 - 33334924 A
i caeSp111.Scaffold629  I 492 C 0
e caePb3.Scfld02_62        50954 1670 +   783054 I
e caeJap4.Scaffold54      206524 644 +   258924 I
e cb4.chrX              21197340 0 - 21540570 C

a score=1581.000000
s ce10.chrX               747340 116 + 17718866 AAATTAAAAA-TAGAATGTAAACA---CAA---TCAAATAGTAAA-------GCGCTTTTTATA-AAAATATCAACGCCCTCCTTCATTCCTCCT--TCTCCTCTTTCTCCTCCTTAAATGTTTCCTTGATGG
s cb4.chrX              21197340 101 - 21540570 ----------------TAAAAATACCTCCA---GCGAATATTATATATCAGTActtttcttttg----tctttctcaactttatcctttctttct--ccttttttttc-------taaatatttccTTGATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   515537 103 -  1162296 ------------aaggtgaaaaaatggcgagatgcaaaaataaaatatcagcactcttttctcc----ttttt-----ttgtcTCCCCTTTCTTT--TCGCATTTCTC-------TAAATGTTTCCTTGATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3515965 118 - 33334924 GAAGTGGAAA-TAGTGTGTAACCAtaccaa---tcaaaaaatagagtt----gcgtttttttcgtaaaatatcagaaaaggCTTTGGCTTTGGTTGCCTGCGTTTCTC-------TAAATGTTTCCTTGATGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        52624 109 +   783054 -AAATAAAAACTAGAATATCAGAATCAATA---ccgcaaaaaaaatct----gc--ttcTTTCG----ACATAACAGATTGctgaaccttttttt---cacGTATCTC-------TAAATGCTTCCTTGATGG
i caePb3.Scfld02_62     I 1670 C 0
e caeJap4.Scaffold54      206524 644 +   258924 I

a score=32597.000000
s ce10.chrX               747456 37 + 17718866 GGCATTTCCATGAGAACATAAATCTTTTATTGAATGG
s cb4.chrX              21197441 36 - 21540570 ACCATTTCCATAAGAacataaatctttttttgaat-g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   515640 37 -  1162296 ACTATTTCCATGAGGACATAAATCTTTTATTGAATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3516083 37 - 33334924 ACCATTTCCATGAGAACATAAATCTTTTATTGAATGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        52733 37 +   783054 GCTACTTCCAAAAGAACATAAATCTTCTATCGGATGG
i caePb3.Scfld02_62     C 0 I 1031
s caeJap4.Scaffold54      207168 37 +   258924 GGCATTTCTATGAAAACATAAACATTGTATTTAATAT
i caeJap4.Scaffold54    I 644 C 0

a score=1979.000000
s ce10.chrX               747493 10 + 17718866 GACTAATCAT
s cb4.chrX              21197477 10 - 21540570 gcCTAATCAT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   515677 10 -  1162296 GCCAAATCAT
i caeRem4.Crem_Contig24 C 0 I 994
s caeSp111.Scaffold629   3516120 10 - 33334924 GCATAATCAT
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold54      207205  9 +   258924 ACATAACTT-
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        52770 1031 +   783054 I

a score=861.000000
s ce10.chrX               747503 8 + 17718866 TTCTTTGC
s cb4.chrX              21197489 8 - 21540570 ttcttctc
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold629   3516131 8 - 33334924 TTGAGCTT
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold54      207214 8 +   258924 TTCTTTGC
i caeJap4.Scaffold54    C 0 I 1405
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=-855.000000
s ce10.chrX               747511  91 + 17718866 TGAAGAGAGGAGGAGAAGGACCCTCCTGTTTTATATAGT--------------GAC-------------GATGACGCTAGGAACTTCCGTAAAATCATCTGGAACTAAACATTTTTAT
s cb4.chrX              21197497 111 - 21540570 aaaaagaaTGTAGACCcggttttttctcctttttttcataaacGCTCCAGATGAAATGAAGTTCTTCTGAATGTTCTCATGA--TTTGGTCAAATCAGCTGG-----AACGTTTTTAT
i cb4.chrX              C 0 I 1893
s caeSp111.Scaffold629   3516139  74 - 33334924 TCAAATAGTGAAGGCATtagattttcttc------------------------aaa-------------aaagtttttatga--tttcCTTGAATTAACTGG-----AACcgttttat
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=-891.000000
s ce10.chrX               747602 259 + 17718866 TTAATGGGCTTTTAACTATAGATA--TAACTAGTTTCGGAAATTTGTAAACGATATGACGTTT-------GGTAGCTACAGCCTACAGATTG-------AAACGGCTAACG---TTTTTTTCACGTGCCTATGCCTGTCTATCACCTATGGCTCTGAGTG---------TTGCAGTAAAGTCG---GCTTGAAAAAGCACTGCAAGTTTTAAACATGGCTAAAAGTTTGTGGTACGCCCAGTACTTCAATCATTTA-----TGAGGTTACTG---------TATCTCTATCTTAAATTTTGCTT
s caeSp111.Scaffold629   3516213 285 - 33334924 t-----ggtttttcatTGTAGAGAGTTCGGTGGAAGCGTAAGTCGCTGAACT-TTCGATGTTTTTAGGAAGCTAACTATGTCAcgcaaattgtttttttaactGTCTGATGGActctttttggtttctatTTACTTGtcaa--atttataattttggTCGACCAAAAACGTgtaagaaaatcaaatattctACTAAGcagattttattttaaa-------aaaggtttcTGATA----CAGtatttgtaatttttaaaaatcaaaataactgTAACAGATATAACTCAATGATGAATTTTCGTT
i caeSp111.Scaffold629  C 0 I 234
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=0.000000
s ce10.chrX               747861 271 + 17718866 GCAGAACTTATATTTTATTAGTGGTACGCAAGGCTAAAGTGACTGAGAGGTTTGAAGAGGCAGAAAAAATTGAAAAACATTTCGATGACCATAGCTTTAAAAAACATAGAAGTTGGCGATTGTATTTTGGTACTTATAGCTTTTTCCCCCAAAATGCTTTAATTTTCTAAATTTCTGTTGACCACATAAACGTGACTTTTTGAAACGATTTGTAGAAATGAATGTTTTGCTCCGTAATTTTGTTTACGTTTTTAATTTGAAAGGTGGaaaa
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3516498 234 - 33334924 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=266.000000
s ce10.chrX               748132 163 + 17718866 ttaaatttcagaaaattagaa--cattttcgggggtaacgaaacccataagtatcTGTATTTTTATAAAACAATTAAAGA-----------AAACT--------TTCTTGGCTGACCTCAAGG-----CAAAGCACTACCATTACCAGGTGCAATACTATAATAATATTGGATTAAAAATAATTTTCAA
s caeSp111.Scaffold629   3516732 169 - 33334924 ATATATTTCCGCAAATTAATAGCCAGCTTTTGG-----CAAAAGCAATATG-----ATCTTTGTATAAAATAACtggaaaactacagtaagaaactgcagattatttttttttgatttatagGAGCCTCAAAAAGGAAACTTTGC----------ATTTTAAGCAAAATGGATAAAATATGACTGTAAA
i caeSp111.Scaffold629  I 234 I 43
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=0.000000
s ce10.chrX               748295 24 + 17718866 ATAGCTTGTACAAGCGCAGAACTC
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3516901 43 - 33334924 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=-263.000000
s ce10.chrX               748319 61 + 17718866 ATTGGGGAAATACGGTACATGTCCATTCAATGATGCACAAAAAAATTCCGCCTCTC-------------CTTCT
s caeSp111.Scaffold629   3516944 63 - 33334924 AATGCGAAAATTCCGCATGTTTCTAT-------CGCACAGAAAAAC----ATTCTCGGAATAGATGAATCTGAA
i caeSp111.Scaffold629  I 43 C 0
e caePb3.Scfld02_62        52770 1031 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=570.000000
s ce10.chrX               748380 42 + 17718866 AAAGGAAACATTCGAAAAAACATGCAAACAGCGTCGGAGAAG
s caeSp111.Scaffold629   3517007 32 - 33334924 AGAGGAAACACGTGTAAAagaatgcaa----------aaaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        53801 32 +   783054 agaagaaaca--tttCAGACACTGAAAC--------GAAAGG
i caePb3.Scfld02_62     I 1031 C 0
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   515687 994 -  1162296 I

a score=26868.000000
s ce10.chrX               748422 180 + 17718866 ----AG--CAAAAGAAGTGCAATTTTCTTGCTTCTCATCTTTCCCCCCCAAAAA--------AGCAC---TGGTGTAGCTCTCACGAACGTACAAGAAATGGAGCGTTGTGAGAAGAAAATAATTGCCTT-CTCCTCAATGAACAAT-------AAAAACACGTGTCAGAGTGAATAAATCTTCTCGCT---------TAGGCGCA-AGAAATGC
s caeRem4.Crem_Contig24   516681 168 -  1162296 ----AG--CCGAAGAAGTGCAATTTCC----------------TCTTTAAAAAAGACGGG--GGAAT---TGGCGTA-------CGAACGTACAAGAAATGGAGCA-------AGCGAAATAATTGCCTT-CTTCTCAATGAACAATAAGGCTCACAAAAACGTGTCAGATGGAATAAATCTCTCTTCG-----TTTCTGGGACTAAGGAGATGC
i caeRem4.Crem_Contig24 I 994 C 0
s caeSp111.Scaffold629   3517039 180 - 33334924 aagaagcccCCAAGAAGTGCTATTTCC-------------TATGcctcaaaaaaaacgaggCGGAATTGATGGTGTAG-GCCCACGAACGTACAAGAAATGGAGCGTTGT---GTGAAAATAATTGCCTT-TTCCACAACGAACAAT---------AAAAACGTGTCAGAGCGAATAAATCTCCACGAG-----ATTCTTCAGCCA---AGATTC
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_62        53833 175 +   783054 AATAAA---GCGAGAACTGCAATTTCC----------------GTTTCCAAAAACGCG----GGAAT---TGGTATA--GCTCACGAACGTACAAAACATAGAGtgttgt---gaaaaaataattgcctTCTTTTTCCGTGAACAAT--------CGAGAACATGTCAGAGCGAATAAATCTTTTCGGATATTCACCCTTTGCTCA-GGAGATGC
i caePb3.Scfld02_62     C 0 I 1193
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I

a score=4085.000000
s ce10.chrX               748602 25 + 17718866 GGATTGGCAGTAATGTGTACAACTT
s caeRem4.Crem_Contig24   516849 25 -  1162296 GGATTGGCAGTAATGTGTACAACTT
i caeRem4.Crem_Contig24 C 0 I 58
s caeSp111.Scaffold629   3517220 24 - 33334924 AGACCAGGAAT-GTGTGTACAACTT
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I

a score=86.000000
s ce10.chrX               748627 3 + 17718866 TGG
s caeSp111.Scaffold629   3517244 3 - 33334924 GGG
i caeSp111.Scaffold629  C 0 I 44
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   516874 58 -  1162296 I

a score=0.000000
s ce10.chrX               748630 840 + 17718866  
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3517247  44 - 33334924 I
e caeRem4.Crem_Contig24   516874  58 -  1162296 I

a score=232.000000
s ce10.chrX               749470 23 + 17718866 AACTAAAGATATACGGCAAAAAC
s caeRem4.Crem_Contig24   516932 23 -  1162296 AAATAGAAAGAGGTGGAAGGGAA
i caeRem4.Crem_Contig24 I 58 C 0
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3517247 44 - 33334924 I

a score=8896.000000
s ce10.chrX               749493 125 + 17718866 -GAAAAGAGGATCGTAAAATAA------CGTGAAATTGAAAAAC-GAAGAAGACGAACTCCATCTTAGAAGATTGGATGGCTCTGGGATTTG--TAGATTTGTACTCTTCAATTCTTTTTCAGACATTAAATTCC-------
s caeRem4.Crem_Contig24   516955 112 -  1162296 -GAGGAATGGATCGTAAAAGAA------CGTAGAATAGAGGAACAAAAAAGGAGGAACTCCATCTCAGATGATTGAATGGA---------TG--CGGGTTTGTACTCT----ATTTTCTT-AGAcatcgaaattc-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3517291 121 - 33334924 GAAGAGAggcatcgaaaaaaaataggatcgtaaa--aaacgaatagaaagaaaggaaCTCCATCTCAGAAGATTGGATGGA---------TGGAAGGATTTGtactct----ttcttctt------ttgaaaatcagatgCC
i caeSp111.Scaffold629  I 44 I 1156
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I

a score=433.000000
s ce10.chrX               749618 25 + 17718866 AA--TTCGCT----CTCTTTTTTTCAATGAC
s caeRem4.Crem_Contig24   517067 31 -  1162296 aaatttcgctgatgcatttttttctaactac
i caeRem4.Crem_Contig24 C 0 I 472
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3517412 1156 - 33334924 I

a score=0.000000
s ce10.chrX               749643 779 + 17718866  
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeSp111.Scaffold629   3517412 1156 - 33334924 I
e caeRem4.Crem_Contig24   517098 472 -  1162296 I

a score=439.000000
s ce10.chrX               750422 11 + 17718866 TCTTTCTGGAA
s caeSp111.Scaffold629   3518568 11 - 33334924 tttttccataa
i caeSp111.Scaffold629  I 1156 C 0
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I
e caeRem4.Crem_Contig24   517098 472 -  1162296 I

a score=-912.000000
s ce10.chrX               750433 14 + 17718866 AATCTGGAAAATAC--
s caeRem4.Crem_Contig24   517570 14 -  1162296 AATctttaaaaacc--
i caeRem4.Crem_Contig24 I 472 C 0
s caeSp111.Scaffold629   3518579 14 - 33334924 aaagtt--aaaactaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21197608 1893 - 21540570 I

a score=927.000000
s ce10.chrX               750447 39 + 17718866 -----------AATTCAAATTGAAATTGTCGGGAAACTTAAAAGCAGACC
s cb4.chrX              21199501 42 - 21540570 aaatcaactggaaatcAATTTCGAT--GGCGGGAAActtgaaag------
i cb4.chrX              I 1893 C 0
s caeRem4.Crem_Contig24   517584 26 -  1162296 ----------------aattttcaa--gtcGgaaaacttaaaag------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3518593 33 - 33334924 --------agtttttcaattttttg--ggcggt-aacttaaaag------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        54008 1193 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I

a score=65391.000000
s ce10.chrX               750486 199 + 17718866 CAAAAAAAAGAGGGG-----GTGAAATCCGTAAAAATAAA--AGAAATAGGCTGGGGAATTGTATGCT---CTCATCGCACAAAAGCAGCTTC-------CTTAC---GCTTTGCATATCATTGCCGATTTTCTTCGGCTCGTTTAATTCGCTGACTTTGTCACAATGATTGAAATGTGTTCAGGGAGTT---GGG---CACTCTCG-CCGGGCGGTTA------------ACGAGAA--
s cb4.chrX              21199543 195 - 21540570 ----ggaaaatgcaa--------aaatttgcGAGTTTGAG--AAGAAATAGCTGGGGAATTGTATCCCCCTTTCATTCC------GTTTTTTCAACGCACCCCACTAGGCTTTGCATATCATTGTCGATTTTCTTCAGCTTGTTTAATTCGCAGACTTTGTCACAATGATTGAAATGTGTTCAGGGAGTT---AGA-------CTCG-CCGGGTGGGCA------------CCAAAAA--
i cb4.chrX              C 0 I 402
s caeRem4.Crem_Contig24   517610 205 -  1162296 ----gaaaaaaggaa-----aagaaatccgtgtgaataaa--agaaaTAGGCTGGGGAATTGTACGGCTCTCATCTTCCAC-AGAGCATCTCC----CACCACACT--GCTTTGCATATCATTGTCGATTTTCTTCGGCTCGTTTAATTCGCTGACTTTGTCACAATGATTGAAATGTGTTCAGGGACTT---GGAGGGCATGCCCGCCCGGGCGGGCA------------CCGAAAA--
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3518626 190 - 33334924 ---aaaaaattgaga-----cgAAAATCCGTTGAAATAAACGGGAAATAGGCTGGGGAATTGTATATT--------------------------------CTCAGA--GTTTTGCATATCATTGCCGATTTTCTTCGGCTCGTTTAATTCGCTGACTTTGTCACAATGATTGAAATGTGTTCAGGGAGTTGGGGGG-------CTCT-GCGGGCGGGCGTTGCTCTAGTCCATATGAATG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        55201 198 +   783054 --CATAAAAgagagagtttgaaaaaattccttgAGATTGA--AGAAATA-GCAAGGGAATTGTAGATT---TGCATCCCAC-GAAGCAC--------CACCACACA--GCTTTGGATATCATTGCCGATTTTCTTCGCCTCGTTTAATTTGCTGACTCTGTCACAATGATTGAAGTGTGTTCAGGGAGTT---GGA-------CTAT-GCTGGAGAGCG------------GAAAGAAAG
i caePb3.Scfld02_62     I 1193 C 0
e caeJap4.Scaffold54      207222 1405 +   258924 I

a score=-1961.000000
s ce10.chrX               750685 4 + 17718866 GACG---
s caeRem4.Crem_Contig24   517822 4 -  1162296 AAGG---
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3518816 4 - 33334924 ---GCCA
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_62        55399 4 +   783054 ---GATG
i caePb3.Scfld02_62     C 0 I 1201
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I

a score=2687.000000
s ce10.chrX               750689 135 + 17718866 CCACAAAAATCGGCGAGCTCTCCCATTTTTGCATTATCATATGTTCAAATCTTTCAGGATCGCATTTTTGCATG----TTTGGATGAGATTGTGGAAGAATAAATCTACTTGATTGTGTATTGAA---CATTCT-----TCTAAAAT
s caeRem4.Crem_Contig24   517826 131 -  1162296 CCACAAAAACTTG----------CTTTGCTCTGTTATCAGTTGTTCAAATCTTGCATTGCTGCACATTTTTATTGTGCCctgttcaatttttcgga------tttttttgaacatgtgttttggaatgtattttgaacATTCAAGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3518823 123 - 33334924 CCACAAAAATCTG--------CTCTTTGCTTTGTTATCAATGATTCAGatctt-------tggaattttttgct----CGAGcgaaaagatttgaaataattttctttcggGATTGTGCTTTGTTGTGTGCTTT-----Cttaaaat
i caeSp111.Scaffold629  I 3 C 0
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I

a score=-3316.000000
s ce10.chrX               750824 231 + 17718866 AACAACTA-AATTTTGAAAAATCCAACGTAGGGTTGAGCATACAAATCTGAAAATGGAAAAGTGTAT-----------GTCTGGGCCATATAAC-----TCAAAAT--------ATTACGTATTATCAT---------------AAATCAATTGTAGTTGAGTTTGGCAAGCAAAAAAAT----TGCGT---------CTGATAATTGAAAAAAAAAGCCAACCAGCTCAGTGCAAAAC-----------------------------------CTGAGCAG--------------TAAAAAAT-TCTGTCAGTG---------------------------TAAAATTTTGTTTGGTCAG
s caeRem4.Crem_Contig24   517957 338 -  1162296 GTTTAATATAATATTAGCAAGGCCA------------------TATTCTTagatttccaaaatgttttgattgacTTGGTTTTTTCCATATAACTTCATTCGAAATTTGTGTTAATTAAGtaatatcattttttaaacgtttCAATAACATTCATATCTG-GCTTAGCTATCACTACCATGCAGTGCGTTTTTTATAGTTGTCAATTTCTAAGATGGGTCAAAC----CTGTGGAAAACTATACTCTTggagttttcaatcaaattgaTTTATGCACAGCAGTGACGCTAACCGACTAAAAAGTATCTGACAGAGCTATTTTTGCCTTCCATTCGCATCCACTGAAATCGTTTCTATTCGG
i caeRem4.Crem_Contig24 C 0 I 82
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I
e caeSp111.Scaffold629   3518946   0 - 33334924 C

a score=0.000000
s ce10.chrX               751055 68 + 17718866 TTCAAACAGAAATTCGGTTACTGCAAACAAAAATTTGGTCAGTGTGAAACTTGTACTGATCAGTTCTT
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I
e caeSp111.Scaffold629   3518946  0 - 33334924 C
e caeRem4.Crem_Contig24   518295 82 -  1162296 I

a score=-458.000000
s ce10.chrX               751123 81 + 17718866 CACACCCTTGATCCTGAAACATTTGTTTGCTGCTTTA---------TTAAGAATAACTCACTACATG--------AACGACAACAAAACATGTAAAAA
s caeRem4.Crem_Contig24   518377 94 -  1162296 AACATCTTTTGTTTTG--GCCCTTGATTG--GTTTTAGAAACGCATTTTAAAACAACTTACAGTACTCTCTCCACAATGAAATTGAAACCAGATTcag
i caeRem4.Crem_Contig24 I 82 C 0
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I
e caeSp111.Scaffold629   3518946  0 - 33334924 C

a score=-644.000000
s ce10.chrX               751204 11 + 17718866 TTTTGATTAAT-
s caeRem4.Crem_Contig24   518471 11 -  1162296 ttatgaaaaat-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3518946 11 - 33334924 -tatcaaaatgt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21199738 402 - 21540570 I

a score=7557.000000
s ce10.chrX               751215 129 + 17718866 TTATTGCCAATAAATAATTGAAACACGACCTACTAGGCTCT-----ATGACAAT--TTTGAGAAG----------------AAACGAAATGAAGACAAAAGAAGTTGGCCTGGATAGAATGTAAA----------------------CTCA------AAGCAAGTCAAGCAAAAAAAAAC
s cb4.chrX              21200140 147 - 21540570 TTATTGCAAATAATTAAGTAATACACGACCTAGGATCTTTTCGAAAGttaggaaaaactgaaaaaatgggataGTAGTCTGAGTCGGACTAATAAAACTACA-------TTGGAAAGCATTGAAAAG--------------------TTTA------AAGCAAGACAAGCAAAAAGACAC
i cb4.chrX              I 402 I 45
s caeRem4.Crem_Contig24   518482 152 -  1162296 ttattgCAAATAATAAATTAATACACGACCTAATAGGTTCT-----ATGaggaacatttcaaaacactGAG----------AGTTGAGTTAAGAACAAAGAA-------CTGGAATGAATTTAAGAGATGGTTTGGCCTGGTAAGGATTTATaaaagaagcaagacaagcaaaa------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3518957 125 - 33334924 ttattGCAATTAAATAATTAATACACGACCTAAGAGGTTCT-----ATGACATTCATCTCTCAAA----------------TATCGAGTGGAAAACTAAttt-------ccgaagaaaaacaaaaataaaattt-------------tttg--------gcctggtaagcatat------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I

a score=180.000000
s ce10.chrX               751344 143 + 17718866 GGAGAAAACGACAAAAAAGGAAAAAGAAGAAAGAACATGACTAAAATTGCACTGTCATAAAGTCAAATGTGAGTGTTTTATATTATGTTATGTGTATCTGTATAAATTAATTAAAATTCAAAT-ATCTACATTTCTAAGAAATC
s caeRem4.Crem_Contig24   518634  90 -  1162296 --------------------agaaaaatgaaagaacatgactaaaaTTGCACTGTCATAAAACTGAATGTGAGTGTGTTTGAATAACT--------------tacatttattcaaaacgaGATT--------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519082  76 - 33334924 --------------------gaaaaaacgcaagaa---aagcaaaattgga-----agaaaaatgactaaGATTGCACTGtaataa----------------taatattattC---TTGAAAT---------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        55403 1201 +   783054 I
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21200287  45 - 21540570 I

a score=-4588.000000
s ce10.chrX               751487 31 + 17718866 -GAGGAAAACAAGAATAAAAAGAAAAAAGTTC---------
s caeRem4.Crem_Contig24   518724 36 -  1162296 TGGGAACAGTGGGTC-----AGAGAGAAAACGCTGGAATTA
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   3519158 12 - 33334924 --------------------GGATAGAAGAGC---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        56604 30 +   783054 -GAGGTGAACaagct-gaaaaactagaaaatg---------
i caePb3.Scfld02_62     I 1201 C 0
e caeJap4.Scaffold54      207222 1405 +   258924 I
e cb4.chrX              21200287 45 - 21540570 I

a score=-1413.000000
s ce10.chrX               751518 4 + 17718866 AAAT-----
s cb4.chrX              21200332 4 - 21540570 AAAA-----
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig24   518768 4 -  1162296 CAAC-----
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold629   3519170 4 - 33334924 ACAT-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        56634 9 +   783054 aaatgaata
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      207222 1405 +   258924 I

a score=86131.000000
s ce10.chrX               751522 90 + 17718866 TTATTTACTATGCTCTTCCTTTTTGTGTCCAGCAGCTGCTAGGGAGAAGACGCACAGAACTGCATAGCAAATCTGATCTGCCTGTAAATT
s cb4.chrX              21200336 87 - 21540570 TTATTTACTatgctcttcttttttgtgtccAGCAGCAGCAAAGGAAAAAACACAAAGAACTGCATAGCAAATTTGATCAGCCTGAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   518772 87 -  1162296 TTATTTACTatgctcttcttttttatgtCCAGCAGCTGCTAGGGAGAATACACAAAGAACTGCATAGCAAATTTGATCTGCCTGTAA---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519174 90 - 33334924 TCATTTGCTATGCTCTTCTTTCTTATGTCCAGCAGCTGCTAGGGAGAACACACAAAGGACTGCATAGCAAATTTGATCTGCCTGTAATTT
i caeSp111.Scaffold629  C 0 I 224
s caePb3.Scfld02_62        56643 90 +   783054 tcATTTACCGTGTTCCTCTTTCTTATGCCCTGCTGCTGCTAGAGAAAACACACAGAGAACTGCATAACAAATTTGATCAGCCTGCAAGTT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      208627 90 +   258924 TTATTTGGattgttcttcttttttatgCCCTGCAGCTGCCAACGAAAAGACGCAAAGGACTGCATAACATATTTGATCCGCCTGTGAATC
i caeJap4.Scaffold54    I 1405 C 0

a score=-1936.000000
s ce10.chrX               751612 1 + 17718866 -T
s cb4.chrX              21200423 1 - 21540570 -A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   518859 1 -  1162296 -T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        56733 1 +   783054 -T
i caePb3.Scfld02_62     C 0 I 780
s caeJap4.Scaffold54      208717 1 +   258924 A-
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3519264 224 - 33334924 I

a score=-1066.000000
s ce10.chrX               751613 11 + 17718866 ACGGGGGATTT-
s cb4.chrX              21200424 11 - 21540570 TGTGTTGATTA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   518860 11 -  1162296 ACGAGGGGTTA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold54      208718 11 +   258924 -ATGaagatttt
i caeJap4.Scaffold54    C 0 I 684
e caePb3.Scfld02_62        56734 780 +   783054 I
e caeSp111.Scaffold629   3519264 224 - 33334924 I

a score=-1152.000000
s ce10.chrX               751624  4 + 17718866 ATGT-----------
s cb4.chrX              21200435 15 - 21540570 CTGGGATATTCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   518871  4 -  1162296 CTGT-----------
i caeRem4.Crem_Contig24 C 0 I 363
e caePb3.Scfld02_62        56734 780 +   783054 I
e caeJap4.Scaffold54      208729 684 +   258924 I
e caeSp111.Scaffold629   3519264 224 - 33334924 I

a score=151.000000
s ce10.chrX               751628 3 + 17718866 AGT
s cb4.chrX              21200450 3 - 21540570 AAT
i cb4.chrX              C 0 I 357
e caePb3.Scfld02_62        56734 780 +   783054 I
e caeJap4.Scaffold54      208729 684 +   258924 I
e caeSp111.Scaffold629   3519264 224 - 33334924 I
e caeRem4.Crem_Contig24   518875 363 -  1162296 I

a score=0.000000
s ce10.chrX               751631 1228 + 17718866  
e caePb3.Scfld02_62        56734  780 +   783054 I
e caeJap4.Scaffold54      208729  684 +   258924 I
e cb4.chrX              21200453  357 - 21540570 I
e caeSp111.Scaffold629   3519264  224 - 33334924 I
e caeRem4.Crem_Contig24   518875  363 -  1162296 I

a score=351.000000
s ce10.chrX               752859 5 + 17718866 GCAGA
s caeRem4.Crem_Contig24   519238 5 -  1162296 gtAGA
i caeRem4.Crem_Contig24 I 363 C 0
e caePb3.Scfld02_62        56734 780 +   783054 I
e caeJap4.Scaffold54      208729 684 +   258924 I
e cb4.chrX              21200453 357 - 21540570 I
e caeSp111.Scaffold629   3519264 224 - 33334924 I

a score=1345.000000
s ce10.chrX               752864 25 + 17718866 AGTTATGGAACAACATCAATTGGTG
s caeRem4.Crem_Contig24   519243 19 -  1162296 AGTTAT------CCATCAATTTGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519488 25 - 33334924 aattgtatagtataATCAATCGGTA
i caeSp111.Scaffold629  I 224 C 0
e caePb3.Scfld02_62        56734 780 +   783054 I
e caeJap4.Scaffold54      208729 684 +   258924 I
e cb4.chrX              21200453 357 - 21540570 I

a score=2115.000000
s ce10.chrX               752889 3 + 17718866 TCT
s caeRem4.Crem_Contig24   519262 3 -  1162296 TCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519513 3 - 33334924 TCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        57514 3 +   783054 TCC
i caePb3.Scfld02_62     I 780 C 0
s caeJap4.Scaffold54      209413 3 +   258924 TCC
i caeJap4.Scaffold54    I 684 C 0
e cb4.chrX              21200453 357 - 21540570 I

a score=141684.000000
s ce10.chrX               752892 423 + 17718866  
s cb4.chrX              21200810 403 - 21540570  
i cb4.chrX              I 357 C 0
s caeRem4.Crem_Contig24   519265 467 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519516 407 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        57517 506 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      209416 360 +   258924  
i caeJap4.Scaffold54    C 0 I 177

a score=-7811.000000
s ce10.chrX               753315 84 + 17718866 AATGCTTTCTATACGTTTTCTTTAATTGTAGTGCCGGTGAACCTTATTCAGAAATTATGTTAGAACTAACAACTAA-----AATTTAAA
s cb4.chrX              21201213  9 - 21540570 ---------------------------------------------------------------------------A-----AACATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   519732  9 -  1162296 ---------------------------------------------------------------------------a-----aattcaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519923 14 - 33334924 ---------------------------------------------------------------------------ATAGTTAATTATAA
i caeSp111.Scaffold629  C 0 I 17
s caePb3.Scfld02_62        58023  8 +   783054 ---------------------------------------------------------------------------------aattcaaa
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold54      209776 177 +   258924 I

a score=0.000000
s ce10.chrX               753399 52 + 17718866 AAATGCTCTTTATAATGAAATAGTAACCAATAGGCATAGTTTGTCATTGTCA
e caePb3.Scfld02_62        58031  1 +   783054 I
e caeJap4.Scaffold54      209776 177 +   258924 I
e cb4.chrX              21201222  0 - 21540570 C
e caeSp111.Scaffold629   3519937 17 - 33334924 I
e caeRem4.Crem_Contig24   519741  0 -  1162296 C

a score=-4346.000000
s ce10.chrX               753451 80 + 17718866 CCAATTCATTTGCTACAGACTTTGATCATATTTTTCTGACCAAATAGCAATTTTTAAATTTATCCTCTTTTTGCAAAATT
s caeRem4.Crem_Contig24   519741 21 -  1162296 -------------------------------tgttctGAT----------------------------GTCTGTAAATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        58032 12 +   783054 ---------------------------------tttcagc----------------------------ttttg-------
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold54      209776 177 +   258924 I
e cb4.chrX              21201222  0 - 21540570 C
e caeSp111.Scaffold629   3519937 17 - 33334924 I

a score=-4834.000000
s ce10.chrX               753531 46 + 17718866 TAAATTCAAAGGGACAAAAGTTGTTGCACGAGCGGATTGTTATTGC
s cb4.chrX              21201222  7 - 21540570 ----------------------------TAAACTA-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   519762  5 -  1162296 ------------------------------GGCTG-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        58044  7 +   783054 ----------------------------tgAGCGA-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      209776 177 +   258924 I
e caeSp111.Scaffold629   3519937 17 - 33334924 I

a score=-9400.000000
s ce10.chrX               753577 21 + 17718866 AAAGGAACAAGGAATTG--TTTT-------------------------
s cb4.chrX              21201229 17 - 21540570 GAAGAAATAACATGTTA-------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   519767  2 -  1162296 ---------------TA-------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        58051 13 +   783054 ------ATAATTAATCAAA-----------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      209953 42 +   258924 aaaaaagcaggggattt------ttcagctattagccgtcgtaTCTGT
i caeJap4.Scaffold54    I 177 C 0
e caeSp111.Scaffold629   3519937 17 - 33334924 I

a score=250803.000000
s ce10.chrX               753598 316 + 17718866 TTTTTCCAAACTTACTTGTAGCAATCCGCCTTGATTAGTTTCAGTGTCATGAACTGGAAACTCTCCTCCCAGGGCTCTTCCCTCAACATTCACTTTTCCTCGTGCAGCCGCTCTTTCCATTGCTGCCTTCATACATTGATAAAGTTCTCGGCACT------------------------------------------------------TTTTCGTGTGGAATTTATGCATATGCACTTTATCGTCATGTCGTCTCCAAAGACAAAGAATCTTTGTTTTCGGCGAGTATGTGATATTCACAAGACGCTCGTACCACCAACGCTCAGTTGCCGCACCGGTTATTGATCGGAGGACAACTGCATCATCGCAA
s cb4.chrX              21201246 352 - 21540570 -------AAACTTACTTGTAACAAGCCTCCTAGATTGCTCTCTGTATCATGAACAGGAAACTCTCCACCCAGAGCCCGACCTTCCACATTAACTTTCCCTCTGGCTGCTGCTCTTTCCATAGCTGCTTTCATGCATTGATAAAGCTCGCGACactgaaa--acttg-----atttttttta--ttccaacaaaaacttaaa--ccactttttttgtgtaaaatttGTGCATGTGAACTTTATCATCATGCCGCCGCCATAAGCAaagtatttttgttttcggaGAGTATGTGATATTCACAAGACGTTCGTACCACCATCGCTCGGTGGCCGCTCCAGTTATAGCCCTCAGAACCACTGCATCATCACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   519769 350 -  1162296 -------ATTCTTACTTGTAGCAATCCTCCTTGATTGGTTTCTGTGTCGTGGACTGGGAATTCACCTCCTAGCGCTCTACCTTCCACATTTACTTTTCCTCTCGCGGCGGCTCTTTCCATTGCTGCTTTCATGCATTGATAGAGCTCTCGACACtggaa--atcaa-----aatgttttag--tgtca--aaaaaccaaat--ataCCTTCTTGGTATGGAATTTGTGCATATGAACTTTATCGTCATGTCGTCTCCAGAGGCAAagtattttggtttttggagAATACGTTATGTTAACAAGACGTTCATACCACCATCGTTCTGTCGCTGCGCCAGTGATCGATCGTAACACCACTGCATCATCGCAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3519954 356 - 33334924 ------tttttttACTTGTAATAATCCTCCTTGATTCGTTTCTGTATCATGGACTGGAAACTCTCCACCAAGTGCACGGCCTTCTACGTTCACTTTTCCTCTAGCAGCCGCCCGCTCCATTGCCGCTTTCATACATTGATACAGTTCTCGGCactaaactttttaa-----aattactaAGC-TCTTA--TCTTACCGAGAGCTCACTCTTTTTGTGTAAAACTGATGCATATGAACCTTGTCATCATGTCGTCTCCAGAGACACagaattttggttttgggCGAATAGGTGATGTTAACTAGACGTTCATACCACCACCGTTCTGTAGCTGCTCCCGTGACCGATCGAAGAATTACTGCATCATCACAG
i caeSp111.Scaffold629  I 17 C 0
s caePb3.Scfld02_62        58064 352 +   783054 -------ACACTTACCTGTAAGAGTCCTCCTTGATTGGTTTCTGTGTCATGAACTGGGAATTCTCCTCCTAGAGCTCGGCCTTCTACGTTTACTTTTCCTCTTGCCGCGGCTCTTTCCATAGCTGACTTCATGCACTGATACAGTTCCCGACACTAAAA--CACAA-----GTTTTATAAGCATTTTA--AATTGCTGTTG--TCACCTTTTTTGTGTGGAACTGATGCATATGCACTTTATCATCATGTCTTCTCCACAGACAaagaattttggttttgggcGAATAGGTAATGTTAACAAGGCGTTCATACCACCAACGCTCTGTTGCTGCTCCTGTGATAGATCGTAAAACAACAGCGTCGTCACAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      209995 362 +   258924 ATTACTAAAACTTACTTGTAACAAGCCTCCTTGATTACTCTCGGTGTCGTGAACAGGAAACTCGCCACCCAAAGCACGCCCTTCCACAGAAACTTTTCCTCTTGCCGCAGCGCGCTCCATCGCAGTTTTCATACATTGGTACAGTTCTCGGCACTTAAA--TTTaacatttaattatttat--tttca--gctgTTGGGCT--TAACCTTTTTAGTATGAAACTTGTGCATATGAACTTTGTCATCGTGTCGTCTCCAAAGACATAGTATTTTTGTCTTCGGCGAATAAGTCATGTTCACCAATCTTTCGTACCACCAACGCTCTGTAGCTGTCCCTGTGATTGCTCGTAGGACCACTGCGTCGTCGCAT
i caeJap4.Scaffold54    C 0 C 0

a score=1146.000000
s ce10.chrX               753914 4 + 17718866 ACCT
s cb4.chrX              21201598 4 - 21540570 ACCT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold54      210357 4 +   258924 ACCT
i caeJap4.Scaffold54    C 0 I 44
e caePb3.Scfld02_62        58416 0 +   783054 C
e caeSp111.Scaffold629   3520310 0 - 33334924 C
e caeRem4.Crem_Contig24   520119 0 -  1162296 C

a score=100.000000
s ce10.chrX               753918 1 + 17718866 G
s cb4.chrX              21201602 1 - 21540570 G
i cb4.chrX              C 0 I 39
e caePb3.Scfld02_62        58416 0 +   783054 C
e caeJap4.Scaffold54      210361 44 +   258924 I
e caeSp111.Scaffold629   3520310 0 - 33334924 C
e caeRem4.Crem_Contig24   520119 0 -  1162296 C

a score=0.000000
s ce10.chrX               753919 758 + 17718866  
e caePb3.Scfld02_62        58416   0 +   783054 C
e caeJap4.Scaffold54      210361  44 +   258924 I
e cb4.chrX              21201603  39 - 21540570 I
e caeSp111.Scaffold629   3520310   0 - 33334924 C
e caeRem4.Crem_Contig24   520119   0 -  1162296 C

a score=143.000000
s ce10.chrX               754677 6 + 17718866 TCACGC
s cb4.chrX              21201642 6 - 21540570 TCACCA
i cb4.chrX              I 39 C 0
e caePb3.Scfld02_62        58416 0 +   783054 C
e caeJap4.Scaffold54      210361 44 +   258924 I
e caeSp111.Scaffold629   3520310 0 - 33334924 C
e caeRem4.Crem_Contig24   520119 0 -  1162296 C

a score=348685.000000
s ce10.chrX               754683 532 + 17718866  
s cb4.chrX              21201648 485 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   520119 547 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3520310 495 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        58416 641 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      210405 529 +   258924  
i caeJap4.Scaffold54    I 44 I 467

a score=257893.000000
s ce10.chrX               755215 578 + 17718866  
s cb4.chrX              21202133 566 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   520666 559 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3520805 503 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        59057 539 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      211401 533 +   258924  
i caeJap4.Scaffold54    I 467 C 0

a score=-19712.000000
s ce10.chrX               755793 105 + 17718866 CCGCCTAGCGGGGTAGGTCGCACTTCCTAGAACATGCCCACAAATATGattaaatataattttcaaatgttttatattattttGCAAAATTTCAATCTAAAACCA
s caeRem4.Crem_Contig24   521225   8 -  1162296 ------------------------------------------GATGTCTT-------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3521308  20 - 33334924 ------------------------------------------AATACTTTGTCATAAAACTC-------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        59596  20 +   783054 ------------------------------------------GAACAAATGAGAATTGACGG-------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      211934  29 +   258924 ---------------GTTCTTACTTATT--------------CATAACTTTCAAACTC-----------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21202699   0 - 21540570 C

a score=180399.000000
s ce10.chrX               755898 204 + 17718866 ACCGTGCTTGGAGCAGAACTGCTTGGTGTTATAACCTCTCCTCCACCCATCGCCCAGTAATGTGTGTGAGCAATTTCAAGAACATGGAATACACTAGCAAACCCGCAACATCCAGGAGTGTTGAATGACACCTCGATTCCTTCCAGACACGCTTTAAGGATTTTCACATATGCTTTGAACTGGCCTTTTGTCAATTGCTGAAA---------G
s cb4.chrX              21202699 213 - 21540570 ACAGTGCTCGGAGCAGAGCTACTCGGAGTTATCGCATCACCACCACCCATAGCCCAATAATGAGTGTGCGCAATTTCCAATACGTGAAACACGCTGGCAAAACCACAACACCCTGGAGTGTTGAATGAGACCTCGATTCCTTCCAAACaggctttcaaaattttgacatatGCTTTGAACTGTCCCTTTGTCAGTTGCTGCAAAGTAATTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   521233 205 -  1162296 ACGGTGCTAGGCGCCGAACTACTTGGAGTGATTGCGTCCCCACCACCCATTGCCCAATAATGTGTGTGAGCAATCTCGAGTACGTGGAAGACTGATGCAAAACCACAACAGCCAGGTGTGTTGAAAGAGACTTCGATACCTTCCAGACATGCTTTCAGTATTTTGACGTATGCTTTGAACTGTCCTTTTGTTAGTTGCTGAAA--------TG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3521328 213 - 33334924 ACAGTGCTTGGAGCAGAGCTGCTTGGAGTGATCACATCACCACCTCCCATGGCCCAATAATGAGTATGAGCAATTTCTAGAACATGGAAGACGCTAGCAAATCCACAGCATCCAGGTGTATTAAAAGAAACTTCTATTCCTTCCAGACAagctttcagaatttttatgtAAGCTTTGAATTGCCCTTTTGTGAGTTGCTTAAAAGTGTTAATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        59616 213 +   783054 ACCGTGCTTGGTGCGGAACTACTTGGAGTTATCACGTCGCCACCTCCCATTGCCCAATAGTGAGTGTGTGCAATTTCGAGAACGTGAAAAACACTTGCAAATCCACAACACCCAGGTGTATTGAACGAGACTTCGATTCCTTCCAAACATGCTTTGAGTATTTTTACATACGCTTTGAACTGCCCTTTCGTTAATTGctaaaaaattcagttc
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      211963 204 +   258924 ACGGTGCTGGGCACTGAACTGCTAGGCGTTATTACTTCTCCTCCACCCACTGCCCAATAGTGGGTGTGGGCAATTTCAAGAACATGAAAAACACTGGCAAATCCACAGCATCCTGGAGTGTTGAAAGATACTTCAATACCTTCTATACATGCTTTTAATATTTTCACGTATGCTTTTAGTTGACCTTTTGTTAATTGCTGAAAG---------
i caeJap4.Scaffold54    C 0 I 1233

a score=-9477.000000
s ce10.chrX               756102 40 + 17718866 TAAAAGGGAA---CTCATGAAAAAATAATATTCACCCCTCCCT
s cb4.chrX              21202912 23 - 21540570 TGTACTGCTG---TTGATT--------TTTAGCA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   521438 34 -  1162296 TGGACTATGAACCTTGATTAGCAATCAATAAACA---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3521541 27 - 33334924 TACGTt-------taaagaaaccaaaaataaact---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        59829 27 +   783054 tgTATT-------TGGGTCAAAAGAATATATTCC---------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      212167 1233 +   258924 I

a score=159710.000000
s ce10.chrX               756142 213 + 17718866 CTTACCACTTCTTTGACATATTCATCTTCTGATAGTTTGACTTCTAACCCCAGATTTAATTTCGAGCAGACAAGTTCTCGAAGACTTTCATCCTCCATCAGCCGCTTCAATTTTGGAGCAGAAAACATTCCGACGCTCTGTCCCACTAACGCTTGATCGCAGAATTCTTTCACGGTTTGCTGATTCTTGCTGAAACATATTATATAGTTTTTA
s cb4.chrX              21202935 211 - 21540570 --TACCACTTCTTTAACAAACTCATCTTCCGAAAGTTTTACTTCCAACCCAAGATTCAGTTTTGAGCACACTAATTCTCGTAGACTCTCATCCTCCATCAACCGACGCAGTTTTGGAGCAGAAAACATGCCCACGCTTTGTCCAGCTAGTGCTTGATCACAAAACTCTTTTACAGTTTGCTGGTTTTTGCTATaaataaattgagaaattttt
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig24   521472 204 -  1162296 --TACCACTTCTTTAACAAATTCATCTTCGGACAGCTTCACTTCTAATCCCAAATTCAGCTTAGAGCAAACCAATTCTCTGAGACTTTCATCCTCCATTAATCTTCGTAGCTTTGGAGCTGAGAACATTCCTACGCTCTGTCCAGCTAATGCTTGGTCACAAAATTCTTTTACGGTCTGTTGGTTTttgctgaaa-------gaaaaaactaa
i caeRem4.Crem_Contig24 C 0 I 33
s caeSp111.Scaffold629   3521568 187 - 33334924 --taCCACTTCCTTCACATACTCATCTTCTGATAACTTGACTTCAAGTCCGAGATTCAGTTTCGAACAAACCAGTTCTCTCAGACTTTCATCTTCCATAAGCCTTCTTAGCTTGGGGGCTGAGAACATTCCAACACTTTGACCTGCTAAGGCCTGATCACAAAATTCTTTTACAGCTTGCTGATTTTTG------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        59856 206 +   783054 --TACCACTTCTTTGACGTACTCTTCTTCGGATAGTTTGACTTCCAGTCCAAGATTGAGTTTTGAACAAACCAATTCTCGAAGACTTTCATCTTCCATCAATCGTTTTAGTTTTGGAGCAGAAAACATTCCAACGCTCTGTCCTGCTAGTGCTTGGTCACAGAACTCTTTCACGGTTTGCTGATTTTTGCTAAAAAT-----Gataagttttc
i caePb3.Scfld02_62     C 0 I 27
s caeJap4.Scaffold54      213400 213 +   258924 CTAACCACTTCCTTCACATATTCATCTTCCGACAACTTCAAATCAAGACCAAGGTTTAACTTTGAGCACACTAATTCTCGCATTGTCTCGTCTTCCATAAGCCTGCGAAGCTTTGGAGCCGCAAACATTCCGACACTTTGTCCAGCTAGAGCCTGGTCGCATATTTCTTTCACGATTTGTTGGTTTTTACTAGAGAAGAACGTTGGGATTATA
i caeJap4.Scaffold54    I 1233 I 23

a score=0.000000
s ce10.chrX               756355 43 + 17718866 ATCCGCTGTTTTATGTAGATTTCAGTTTTTTTCAAATTGTAAT
e caePb3.Scfld02_62        60062 27 +   783054 I
e caeJap4.Scaffold54      213613 23 +   258924 I
e cb4.chrX              21203146 22 - 21540570 I
e caeSp111.Scaffold629   3521755  0 - 33334924 C
e caeRem4.Crem_Contig24   521676 33 -  1162296 I

a score=36.000000
s ce10.chrX               756398 5 + 17718866 TTTCT
s caeJap4.Scaffold54      213636 5 +   258924 tatat
i caeJap4.Scaffold54    I 23 C 0
e caePb3.Scfld02_62        60062 27 +   783054 I
e cb4.chrX              21203146 22 - 21540570 I
e caeSp111.Scaffold629   3521755 0 - 33334924 C
e caeRem4.Crem_Contig24   521676 33 -  1162296 I

a score=466733.000000
s ce10.chrX               756403 703 + 17718866  
s cb4.chrX              21203168 701 - 21540570  
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig24   521709 612 -  1162296  
i caeRem4.Crem_Contig24 I 33 C 0
s caeSp111.Scaffold629   3521755 694 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        60089 659 +   783054  
i caePb3.Scfld02_62     I 27 C 0
s caeJap4.Scaffold54      213641 708 +   258924  
i caeJap4.Scaffold54    C 0 I 25

a score=-1575.000000
s ce10.chrX               757106 23 + 17718866 TCCGGCATCTGAAC----AAAATGGGT-
s cb4.chrX              21203869 26 - 21540570 TCCAACGTCTACAA--TGAAAACTATAT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   522321 23 -  1162296 TCCAACATCTGCA-----AAATATACGT
i caeRem4.Crem_Contig24 C 0 I 27
s caeSp111.Scaffold629   3522449 28 - 33334924 ACTGGTGTCTGAGAATTTATATCGAATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        60748 24 +   783054 ACCAGTATCtgcaa----aaaggaaaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      214349 25 +   258924 I

a score=145.000000
s ce10.chrX               757129 2 + 17718866 TG
s caeSp111.Scaffold629   3522477 2 - 33334924 TG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        60772 2 +   783054 tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      214349 25 +   258924 I
e cb4.chrX              21203895 4 - 21540570 I
e caeRem4.Crem_Contig24   522344 27 -  1162296 I

a score=-5697.000000
s ce10.chrX               757131 29 + 17718866 TGCAACAAAATAAAGTATAT--------AACCTTAAA
s cb4.chrX              21203899  9 - 21540570 ----------------------------tgttttgaa
i cb4.chrX              I 4 I 16
s caeSp111.Scaffold629   3522479 30 - 33334924 TGCCATTGAAGCCAGTGTTTC-------ATTCTCAAT
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_62        60774 37 +   783054 tgaaaaaaaatctggattttttgataagaattttaaa
i caePb3.Scfld02_62     C 0 I 19
s caeJap4.Scaffold54      214374 29 +   258924 tgcaCATAAATAATGTTTTATTC-----CACTTC---
i caeJap4.Scaffold54    I 25 C 0
e caeRem4.Crem_Contig24   522344 27 -  1162296 I

a score=419532.000000
s ce10.chrX               757160 766 + 17718866  
s cb4.chrX              21203924 661 - 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig24   522371 718 -  1162296  
i caeRem4.Crem_Contig24 I 27 C 0
s caeSp111.Scaffold629   3522524 616 - 33334924  
i caeSp111.Scaffold629  I 15 C 0
s caePb3.Scfld02_62        60830 666 +   783054  
i caePb3.Scfld02_62     I 19 C 0
s caeJap4.Scaffold54      214403 770 +   258924  
i caeJap4.Scaffold54    C 0 I 496

a score=4885.000000
s ce10.chrX               757926 28 + 17718866 TAATCAGCTCACTTTCAAATGTGTGGCG
s cb4.chrX              21204585 21 - 21540570 -------CACACCTTTAACTGTGTGGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   523089 21 -  1162296 -------ATTACCTTTAACTGTGTGACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3523140 17 - 33334924 -----------CCTTTAGTTCTGACACG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        61496 20 +   783054 --------TTACCTTCAATTCTGTTGCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      215173 496 +   258924 I

a score=383691.000000
s ce10.chrX               757954 508 + 17718866  
s cb4.chrX              21204606 508 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   523110 579 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3523157 500 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        61516 509 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      215669 506 +   258924  
i caeJap4.Scaffold54    I 496 C 0

a score=-52256.000000
s ce10.chrX               758462 105 + 17718866 -------------------------------GTTCTGTAGAACAGTTACTAGGCATCTAATAATTTAATACATAGAACCTGTAGACATAAGTAGTAAAATGTGGCTAGGTTTTGCGAAATTG--------------------------------------GATTTCAAGGTC--------------------------------------------------------------------------------------------------------------TA
s cb4.chrX              21205114   1 - 21540570 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------c----------------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   523689  14 -  1162296 -------------------------------AT-------------------------------------------------------------------------------------------------------------------------------CATTTGGGTCCC----------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3523657 267 - 33334924 tgcaaattttttgagccaTTAAAAACTCATGATT--------CACGCACCAGGCCCCTGAAAATT--GTCTATAACTGCTAAAATCAACAGGAAAACAAT-------AGTTCTCCatacttttgaacgctaCTGTATATTCTTCATTATAACATGTTTGGTAttacaatttttattgaaatcaacttaTAAGATTATCTCAATGATGTTTTCATAATATGATTTCCAGTTCTGGGTTTCTAAACGGGaacatgtttttgaaaacatctaATTAGGCAGGAATGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        62025  67 +   783054 ------------------------AATCATAAT----------------CAG-----TGAAAACT--ATaaatgaatac----------------------------atttttccaaa------------------------------------------gatttcaatttt---------------------------------------------------------------------------------------------tccaattagaCA-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      216175   0 +   258924 C

a score=286143.000000
s ce10.chrX               758567 667 + 17718866  
s cb4.chrX              21205115 597 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   523703 602 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 149
s caeSp111.Scaffold629   3523924 840 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        62092 639 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      216175 556 +   258924  
i caeJap4.Scaffold54    C 0 C 0

a score=-15062.000000
s ce10.chrX               759234 67 + 17718866 CATATGTATTCTAAATATTTGTAA-GGTTGTGATAAAAAGTTCACCTCTGGGTTGAAAAAAACAAATA
s cb4.chrX              21205712 22 - 21540570 --------------------------------atggaaaat--------------aaacGAGAATGGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3524764  4 - 33334924 --------------------------atca--------------------------------------
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_62        62731 28 +   783054 --------------------------attttgaatgagtaa--------------aagaaattacaga
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      216731 39 +   258924 ---------------TATTTTAAACCAATGTAAATCAGaag--------------caaaaaacaagaa
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   524305 149 -  1162296 I

a score=-794.000000
s ce10.chrX               759301 34 + 17718866 TTTCAAAATATAGAAAAACAACATTCCTCAATCT
s cb4.chrX              21205734 15 - 21540570 TTTGAAAGTAAAACA-------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62        62759 34 +   783054 tttttgaggaatgaaaagcttattttttcaattt
i caePb3.Scfld02_62     C 0 I 22
e caeJap4.Scaffold54      216770  0 +   258924 C
e caeSp111.Scaffold629   3524768 15 - 33334924 I
e caeRem4.Crem_Contig24   524305 149 -  1162296 I

a score=0.000000
s ce10.chrX               759335 19 + 17718866 CAAAAAAAGTGAACCATGA
e caePb3.Scfld02_62        62793 22 +   783054 I
e caeJap4.Scaffold54      216770  0 +   258924 C
e cb4.chrX              21205749  0 - 21540570 C
e caeSp111.Scaffold629   3524768 15 - 33334924 I
e caeRem4.Crem_Contig24   524305 149 -  1162296 I

a score=-9032.000000
s ce10.chrX               759354 65 + 17718866 CATGGTAATTTTTTTGAATATTTTT-----TAGGGGAACAATTCTCCATGAAGACCAAATTAAATTATGA------------
s cb4.chrX              21205749 38 - 21540570 ---GGGA----TTTTGAGGGATATTACATTTA---aaagaaatc----------------------atga------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3524783 37 - 33334924 cAGAGTA-------TGATTAAGATT-----------AACAAATCTCCT------------------ATTAGCA---------
i caeSp111.Scaffold629  I 15 C 0
s caePb3.Scfld02_62        62815 61 +   783054 CACAGCAACTCATTTGATTAATAAT-----------AAGGAGTTTTATTA----------TTTGTAATaagcattttgaatt
i caePb3.Scfld02_62     I 22 C 0
e caeJap4.Scaffold54      216770  0 +   258924 C
e caeRem4.Crem_Contig24   524305 149 -  1162296 I

a score=-13889.000000
s ce10.chrX               759419 46 + 17718866 AGTGTAATATTAATTTTTTTTTTGAAATGGCATT---------------------TCAAACAAAACG
s cb4.chrX              21205787 36 - 21540570 -------aaacaaCTA---GTATGAAGAAACCAT---------------------CCGAGATAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   524454 52 -  1162296 CTCGTTGTATCAACTGTATGTTTGTAAAAATGATAGTGT---------------ACTGAAAAACCAA
i caeRem4.Crem_Contig24 I 149 C 0
s caeSp111.Scaffold629   3524820 12 - 33334924 ------------------------------------------------------ACTCAAATA-AAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        62876 45 +   783054 ----------------------tgtacaaaacaagttttaattttctcaTCATGACTGAAACACAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      216770  0 +   258924 C

a score=192435.000000
s ce10.chrX               759465 238 + 17718866 ACTCACTCGTAGTAGTACATCCTTCCGGTTGGCAAAACACAGTGACATCAGTTGGCAATATAAAATCTTTATGATCATCGGTTGGGTACCGTCTTAGAATTTCAGGATATGTGACTGTGGTGTCTGTAGTGGCATCCGGGCTGCTTTGACTGGCTCCTCTAGTACGGTTTCGCTTTCCTACGACAACCAGAAAGTCAATCAGACGAGGGCATATCTCTTTTTCTTTGTCATTCATTTT
s cb4.chrX              21205823 238 - 21540570 ACTTACTGGTGGTTGTACATCCCTCCGGCTGGCAAAAGACTGTGACGTCTGTGGGAAGTATGAAATCTTTGTGATCATCTGTTGGGtatcttctcaaaatttccgggTATGTCACTGTCGTTTCAGGAACTGTATCCGAACTGCTCTGTCGAGTTCCTCTGGGGCGATTCCTCTTTCCTACCACAACTAGAAAGTCGATGAGTCGAGGGCATAACTCTTTCTCTTTATCATTCATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   524506 238 -  1162296 ACTAACTTGTAGTGGTGCAACCCTCTGGTTGACAGAAAACCGTTACATCTGTAGGAAGGATGAAATCCTTGTGGTCATCAGTAGGGTATCTCCTTAATATTTCAGGATAGGTGACTGTGGAATCTGTGATCGCATCTGGACTGCTTTGACTGGCTCCTCTAGTCCGGTTCCTTTTTCCAACAACAACCAAAAAGTCTATTAGACGGGGGcataattctttttctttatcatTCATTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3524832 238 - 33334924 ACCCACTTGTAGTAGTACACCCTTCCGGCTGGCAGAATACAGTAACATCTGTTGGAAGAATGAAATCCTTGTGATCGTCGGTAGGGTACCTTCTCAATATCTCGGGATAGGTTACTGTGGAATCATTGGTCACATCATTGCTACTTGTACTTGCACCTCTGGTCCGATTCCGTTTGCCAACCACCACTAAGAAGTCTATCAGACGAGGAcaaagttctttttctttgtcatTCATTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        62921 238 +   783054 ACTCACTGGTAGTAGTGCATCCTTCCGGCTGACAGAAAACAGTTACATCAGTTGGAAGTATGAAATCCTTATGGTCATCAGTTGGATATCTTCTTAATATTTCCGGGTATGTGACAGTCAACTCTGTGGACGCATCAGAACTGCTTTGACTAGCTCCTCTTGTACGATTCCGCTTTCCAACCACCACCAAGAAGTCGATGAGTCTAGGACACAGTTCCTTTTCTTTGTCATTCATCAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      216770 238 +   258924 actgACTTGAGCTTGTACATCCTTCAGGTTGACAGAAAACTGTGACATCAGTTGGCAAAATGAAGTCTTTATGATCATCTGTAGGATACCGGCGTAAAATCTCCGGATAGGTCACTGTGGGATCGTTAGCTTCATTTGAATTCGTCTGACTTTTTGCTCTCATACGATTCCTTCTTCCAACCACCACTAGGAAGTCTATGAGGCGAGGGCATAATTCTTTCTCTTTGTCGTTCATTTT
i caeJap4.Scaffold54    C 0 I 2261

a score=-7226.000000
s ce10.chrX               759703 95 + 17718866 TTATTAGGATAGGTACATTGGTGCAAGCCTGGACAAATTTTGAAAAAGTTAGAAA-------------AAAAATCCAAGATACAAAATGAAGAAAAAAAAGTATGCTC------------
s cb4.chrX              21206061 75 - 21540570 TGGTTACA------GCATGggt------------gatatctgaaaaaatcaatat---------------cacTCCTGAAACTGCGGAAATAAATAAAGAATATACAC------------
i cb4.chrX              C 0 I 499
s caeRem4.Crem_Contig24   524744 90 -  1162296 ATGTTAGG------GCATTTGT------------AGATTCTGGAAGATCAAATATAGggcaaatttcgaaaaaccttGAATATGAGACAGAACGAAAAGAATATTCAA------------
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold629   3525070 49 - 33334924 GTGTTAAG------GCATTGGC------------AAGTtctgaaatagttttcat-----------------------------------------aaatttatttca------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        63159 80 +   783054 ATGCTAGA------ACATTTGT------------Accacctgaaaaataatgaat----------------------gaaaaggaGAATAGcacgaaaaattgattcagaGTGAGTGCTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      217008 2261 +   258924 I

a score=-394.000000
s ce10.chrX               759798 16 + 17718866 taaaaaagtttttttt
s caeRem4.Crem_Contig24   524839 10 -  1162296 AATAAAAGTT------
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3525119  7 - 33334924 ---gaacatt------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        63239 16 +   783054 tgcgaaaatttttgtt
i caePb3.Scfld02_62     C 0 I 262
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I

a score=-8856.000000
s ce10.chrX               759814 262 + 17718866 tttaatttaaaaaaataGAAACAATAAGAGGTAGTTATTT-TAATTTTTCAAATATTTGTTGTGTAACTGTTTACATGATAGATTACAAACGAAATTTTAAGTAAGGttt--aatataaaatttcataatagtaaaatattacttttttttaaatttCAGAAACTAGACAGATAATTTCTAGAAATTTTGAGTGTATAAACTATATATTTCAGAATAAACTATAAAGGTTTTTTTTGCAATTTTCACAAAACGGAACAGAAGAAA
s caeRem4.Crem_Contig24   524849 141 -  1162296 -----------------------ATCAGATTTCAtcattc-cacatttttcacttc---------------------ACTAAACAAACATTATCAgattattcttatttt-----------ctttat--------------------cttgaaatttttgaag---------------cgaGAGAAT-----------AATAATAtgtttcgaagaaaaaaat-----------------gtgtgggcgaataggaaaaa-----
i caeRem4.Crem_Contig24 C 0 I 111
s caeSp111.Scaffold629   3525126 206 - 33334924 -----tttaaaaaagtaaacGGAGTAAgagttgattttttaaaaatgtttcaacac--------tgaaaatcaagaaaccaGATCATTATCGTCAccatatttttgtttttgagagaaaggTTTCATA-------------------ATTAAAAGTTTCGAAGAT-GACGGGCGA---CTAGAGACT--GAGCG---aaaaaaaCTGACGTCAAGAAcacaa------------------attcgaaaaaatggaaagaaagaTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I

a score=68.000000
s ce10.chrX               760076 3 + 17718866 TTA
s caeSp111.Scaffold629   3525332 3 - 33334924 TGA
i caeSp111.Scaffold629  C 0 I 88
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I
e caeRem4.Crem_Contig24   524990 111 -  1162296 I

a score=0.000000
s ce10.chrX               760079 105 + 17718866 ATTTTGTGAAAAATTGTTAGAGAATACATTACATTTTTTCTTAATACAATAATCTCaaaatttgtttaaaattatttaaataaaattCACAACATATAACCACAT
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I
e caeSp111.Scaffold629   3525335  88 - 33334924 I
e caeRem4.Crem_Contig24   524990 111 -  1162296 I

a score=508.000000
s ce10.chrX               760184 68 + 17718866 CACATACTTTTTCCAAGTTATATTATACAAAATTTCAATATACTTAACAGTTGAGTTATTTATAATTG
s caeSp111.Scaffold629   3525423 58 - 33334924 cgcattttttttcaaattttaatt----aacaTTTCGAAGTAACAAAGGATT------TTGGTAAAAG
i caeSp111.Scaffold629  I 88 C 0
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I
e caeRem4.Crem_Contig24   524990 111 -  1162296 I

a score=-13574.000000
s ce10.chrX               760252 354 + 17718866 ------CTAGTCTATGCTTTGTTTTTAAATTTTACATATTATTAGTCTCATCTAAAACCTTAAATTAT----AAAAAAA-----CGAGTGACGTCAAAAATTGCGATTTGTTAAAAAAAGATGACGTTGGGTTCGAAAGAATAATTGATGGCCGGAACGTGTGTCAAACGCACTTTTCCATTGGGGAAGAATGTAAAAAAGGAGCATTTCGCAAGAAAATCAGAACATATTTTCTGACTTTAAATTTGGACTTCATTTGACTGGAATTTGAGTTTATATAAAAATGAAACTATAAGATTAAGCAACAAATCACAATAATAAAAAAGCTAAAATAT----------------------------TGGATGTCGTGGGAAGAAAGAGAGGAAAAAGGGA---
s caeRem4.Crem_Contig24   525101 338 -  1162296 ------CAAATAGATGCATCTCTTTTGCACTTCctatctttttttc-------cagacttttagtttttcggagaaaagGTTTTCATGGGAAGTAGAAAACAGCAGACGAAAAAAGAGTGATga-gataattttaaaaacaag----------gaagaggaaggaaacc--------------ggaaaaaatgtg-------tgaaattcaTGAGAGAAAC---ACTAATTCCATGTTTTTCA--TCAGCATCCATCT-ACTAAA---TGAAAT------AGATCAGAAACATAAAACAAGT--ACAAGTCATAATAAATTACATATGCAAATGTTCATTTCTATTGCTGTCAGTTATAAATTAGAAGGATGAGTGAAGagagacaaaagaaaaaaagca
i caeRem4.Crem_Contig24 I 111 C 0
s caeSp111.Scaffold629   3525481 247 - 33334924 CTAAATCGagtaattgtttttctgatgaaggTATTATAATATTAGC---ATAGCAAACATTGGTTTTTACTATTAAAag-----caagagaa----aaacttaaataatacaaaaaactgat--------ttatGAAAGCATA----------GAAATTCAAGT--GCC--------------AAAATAAATCCA--------GCGAGTCATAATA-AATT---ACATATGCAATTGTTTTAA--TTCACATGC------------------------------CAgagccagaaaaaaa---------------------------------------------------------------aacgggaagcggaaagagagatgaaaaaagacagaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21206136 499 - 21540570 I

a score=-1236.000000
s ce10.chrX               760606 63 + 17718866 -GGAAAAAAGAGGA-------------------AGAACAGAATGAAGCAGTGGAGGTGCAAGAGcccc---ccccccccccccccc
s cb4.chrX              21206635 66 - 21540570 ggaaaaaaagaaaaaaacacagcgAAACTGAGGCAAACGAAGAGAC------GAGGTGCAATAACAAC---GCCA-----------
i cb4.chrX              I 499 C 0
s caeRem4.Crem_Contig24   525439 55 -  1162296 ggaaaaaaagaagagaata--------------aaaaaaggGAGAG------GTGCTGCAATAACAGCAGAGCCT-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3525728 43 - 33334924 gaaaaaagagagga-------------------agaacagaataaa------aagCCCCCACAGAGAG------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        63255 262 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I

a score=19354.000000
s ce10.chrX               760669 229 + 17718866 cA-------TGTGATGGAGAA-----------------------GTGTGTAGACCAAAAAGGG--GCATAGGAGGCCGATGAG--------------------AGAAGAGACGTGTGTATGTGTGTGCATGTGTATTC--CTTCTCATTCTCTTTTCCCTTTT----CTGTTTCGCCCCCTCGC---TGCTATTTTTGAGAGGAGTGAAACGAATGGATGGCAAGAGAGGGAGGACGAAG-CAAAGAAGTGAA---GACTGAGTTCCAAATCAATAG----------------------AGGGAGAGAAAAA---------CAGA
s cb4.chrX              21206701 305 - 21540570 CACAGTATTAGAGATAGAGAGCCCGCATGAATAACGGAAAGAGAGCGT-TTGACCAAAAAGGGGCGCAT-GCAAGAGAACTAGTAGAGAGAAAACAGTCGTATGCATGCTATGTGCGTATGTATGTGTATGTGTATTCCGcttctcattcttttttccctttgcTCGCTGTTTTccccccccATCGACGCTA-TTTTGAGAGA-GTGGAAGAAAGggtttgaaacgg----aaaaaggAGTCGAAgaaa-----------gaattttgaatcaatATAATAGTGAagagagagaatgagaaagagagagagagagagagagaga-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   525494 196 -  1162296 CA-------GGAGATGGAGAG-------------------GAGAGTGTGCTGACCAAAAAGAG----------------------------------------GCATGAGAcgtgtgtgtgtatgtgtatTT--------CTCCTCATTCT----------------CTGTTTCGCCCCCTCGC--ATGCCATTTTTGAGAGATGTGGGGGGAG-----TGAAACGGcgcaaaagaagagaaaaagaagggaggg-TAGTGAGTTCCAAATCaataga---------------------aaaacgagagaga---------aga-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3525771 202 - 33334924 CA-------AGGCATGGCAGA-------------------GTGTGTGTGTTGACCAAAAAGAG--GCAT-AAAAACGGAG------------------------AGAGATGggtgtgtgtgtatgtgtatGT--------CGTCCCTCTCT---------------------TCCCCCTCCCGC---tgctatttttgagaaaagaaggggcAG-----TGAAACGGggggaaaatagagaaaaaggagtgaGA--GAGTGAGTTCCAAATCAATAG----------------------AAAGAGCGCAAGG---------CGGA
i caeSp111.Scaffold629  C 0 I 941
s caePb3.Scfld02_62        63517 211 +   783054 ca-------tgagatgcagag-------------------aaaaaCGTATCGACCAAAA--AG--GCAT-GAAAGCGAAGCAG--------------------AGGAGACGCGGGAGGGTGTATGTGTATG---------CGTCCTCCTCTTTTGG-----------CAGACTCTATTttcttt---tgctgtttttgagagaagaagtGG--A-----TGAAAT-GAGGGAAAATAGCG-AAAAGGAGGGAGAATGAGTGAGTTCCAAATCAATAG----------------------AAAGAGCGAAACA---------CGAA
i caePb3.Scfld02_62     I 262 I 730
e caeJap4.Scaffold54      217008 2261 +   258924 I

a score=873.000000
s ce10.chrX               760898 3 + 17718866 GAG
s cb4.chrX              21207006 3 - 21540570 gag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   525690 3 -  1162296 gag
i caeRem4.Crem_Contig24 C 0 I 1609
e caePb3.Scfld02_62        63728 730 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e caeSp111.Scaffold629   3525973 941 - 33334924 I

a score=91.000000
s ce10.chrX               760901 1 + 17718866 A
s cb4.chrX              21207009 1 - 21540570 a
i cb4.chrX              C 0 I 2035
e caePb3.Scfld02_62        63728 730 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e caeSp111.Scaffold629   3525973 941 - 33334924 I
e caeRem4.Crem_Contig24   525693 1609 -  1162296 I

a score=0.000000
s ce10.chrX               760902 2574 + 17718866  
e caePb3.Scfld02_62        63728  730 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3525973  941 - 33334924 I
e caeRem4.Crem_Contig24   525693 1609 -  1162296 I

a score=2269.000000
s ce10.chrX               763476 194 + 17718866 GAAAATTAAAGAATTGTAATCAGTCACAAAATACCTCAACTAAGACACATTATTCTGCTGCTCTCATCGTCTCAC--GCACTCTTTGCGCGTAAGGTGGTCTCCATGACAAC------GTGCCC-CCTGCCTCAACAACTCGCCACACAGCGCCACCTGA--------TATTAGCGTGC---TCTCTCTCTCTTGC-GTGTATTACCGCTGTTTC----
s caeRem4.Crem_Contig24   527302 204 -  1162296 ggaaattgaagaattgtGAGAGGCCACAATATTTCTCACATAAGACACAAACTTCCGTCGCCCACTTCATCTCCTCTTCATTTCTCACGCGCGTTCTTATTTCCATGGCAACAGGAAAGCGCCCACCCGTCGTA------TGCCAAGTAGCACTCCCCAGGGAATGCTTATTA-CATACACAGCTCCCGTTTTTGCCGTGT--------TGTTTCTATA
i caeRem4.Crem_Contig24 I 1609 C 0
e caePb3.Scfld02_62        63728 730 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3525973 941 - 33334924 I

a score=745.000000
s ce10.chrX               763670 25 + 17718866 ATTCCTCTTTTTTGTCAGCATTTTT
s caeRem4.Crem_Contig24   527506 11 -  1162296 --------------ATACCTTTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3526914 25 - 33334924 ACTCTTAgtttcttacatcgttttt
i caeSp111.Scaffold629  I 941 C 0
e caePb3.Scfld02_62        63728 730 +   783054 I
e caeJap4.Scaffold54      217008 2261 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-2354.000000
s ce10.chrX               763695 27 + 17718866 CACCTTA-ATATTG--------TTTT-------TCATGTATTT
s caeRem4.Crem_Contig24   527517 36 -  1162296 CACCTTGCATTTTGTCATACCTCGTT-------ACTTGGCTTT
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold629   3526939 23 - 33334924 taccttgcattcgg--------------------cttattttt
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold54      219269 34 +   258924 CActtta-atttct--------ttttaaaaaagttatagAGTT
i caeJap4.Scaffold54    I 2261 C 0
e caePb3.Scfld02_62        63728 730 +   783054 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=42086.000000
s ce10.chrX               763722 191 + 17718866 CATGTTTTTCGCAACTTGTAATGAGA-----TTT----TTGCAGTAAA------------AGTGCG-------ATGAGCGTTGAGGAAACTCGGGAAATTCTTGAGAAAGTAATTCAAAAACCACAACTAACTGATCAACTGCTTTCACGACCACCATTCAAATTTATTGTTGATATAGTTAGCAATGTGATAAAGTCTACGGGGTATTTGAAGGTGGG
s caeRem4.Crem_Contig24   527563 200 -  1162296 ------------AATCCCAATAATAG-----TTTGGGGTTTCAGAGAAgcgtgaaaaaagagaacgttGGA--ATGAGTTATGATCAAACAAGAAAAGCGTTCGAGAATGTGATAGGGAAACCATCTTTGACAGACAAATTATTGTCTAAACCACCTTTCAAATTCATTGCGGATATTGTTAGCAATGTGAGGTCTGCCACAGGCTATTTGAAGGTAAG
i caeRem4.Crem_Contig24 I 10 I 669
s caeSp111.Scaffold629   3526964 173 - 33334924 ------------tatgtttttacaag-----ttt----tttCAGTGTA-------------------------ATGAGCGTGGAAAAAACACAAGAAATTTTGGCACATGTCATAACACAACCCACATTAACCAGCCAATTACTATCAAGACCTCCCTTCAAGTTCATTGTGGATATTGTTAGCAATGTGATATTGTCAACAGGTTACTTAAAGGTGAC
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_62        64458 208 +   783054 catattttttgttattttttttgtagaatttttt----tttcagagaa-------aaaaaagtacgaTAGAGTATGAGTCTGGAGAAAACtcaagaaattttggaaaagattaTAAAACAACCAAAGTTGACGGAAAAGTTATTATCAAGGCCACCTTTCAAATTCATCGTAGAAATTGTCGCGAATGTCATTGCAGCAACAGGATATTTGAAAGTAAG
i caePb3.Scfld02_62     I 730 C 0
s caeJap4.Scaffold54      219303 185 +   258924 CACGTTTT----aaccttctat---------ttt----ttttaaattc-------aggaAAGTGA--------ATGAGTATTGAAGAAACGCAAAAGATCTTCAAAGATATAATTCAAAAGCCTAATTTGACTGAACAACTTTTGCTCAAACCACCATTTAAATTTATTGTCGACATTGTTAACAACGTTATCCACTCTACTGGCTATTTGAAAGTT--
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I

a score=546.000000
s ce10.chrX               763913 1 + 17718866 T
s caeSp111.Scaffold629   3527137 1 - 33334924 T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        64666 1 +   783054 T
i caePb3.Scfld02_62     C 0 I 16
s caeJap4.Scaffold54      219488 1 +   258924 T
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   527763 669 -  1162296 I

a score=-5057.000000
s ce10.chrX               763914 40 + 17718866 ATTT------------------------------------GAAAATTTTA-----TTCATAATAAAAAATTATGCGCGAAA
s caeSp111.Scaffold629   3527138 74 - 33334924 GTCTTGTTCAGATTAATGACATTTATTGAAGtatgaaatggaaaacattAGTGTTTTCAGATTGACATG-------TTCAA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      219489 35 +   258924 ---------------------------------------------GTTTGGTTATttgagtttgaaaa-ttttgtacgATA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        64667 16 +   783054 I
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   527763 669 -  1162296 I

a score=-4258.000000
s ce10.chrX               763954 76 + 17718866 ATGTAGATTTTAAGAAATG-------------TAATGTG---GTATGAGAAAAAAAGAGAAAAAACCAGTGCCCAACTTTAGTTTTAAAGTT--
s caeSp111.Scaffold629   3527212 85 - 33334924 CTCCAAATGTCaaacaactttttaaaacttttttatgtACGCAACTGAGACcaggtgaaaaaaa-----ttgccAACTT--GCTCTAAACCG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        64683 35 +   783054 --------------------------------TTATGCgcttgaatga---------ataaaaa------------------ctttaaaaagtt
i caePb3.Scfld02_62     I 16 C 0
e caeJap4.Scaffold54      219524  0 +   258924 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   527763 669 -  1162296 I

a score=-1995.000000
s ce10.chrX               764030  73 + 17718866 TTCGTTTGTCAGTGATGCGAAGTTTTTGGT--------CAGTG--------CTGTGCCA-----------AGTTACT--------------------------CAGTGCTG--TGCCAACTTGGTCAG-------------
s caeSp111.Scaffold629   3527297 141 - 33334924 CACTTTTGGGAATTATGTcacgtttttgtttttgaatgcgGTAGTCTGAACCTGTTCcatcaatagaaaaaattagtaaaaaaacaagaaacaaattttgaaacagagcTGAATGGTATTTTCCTGAGACAGGAGAAATCA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        64718   0 +   783054 C
e caeJap4.Scaffold54      219524   0 +   258924 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   527763 669 -  1162296 I

a score=346.000000
s ce10.chrX               764103 5 + 17718866 CGCAT
s caeSp111.Scaffold629   3527438 5 - 33334924 CGCAG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      219524 5 +   258924 CGTTT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        64718 0 +   783054 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   527763 669 -  1162296 I

a score=-6161.000000
s ce10.chrX               764108 26 + 17718866 AAATTTTCGCTAAATTT-----------TCATTTTAA
s caeRem4.Crem_Contig24   528432 21 -  1162296 GTATTCtcat--atttc-----------ttattt---
i caeRem4.Crem_Contig24 I 669 C 0
s caeSp111.Scaffold629   3527443 33 - 33334924 AAAGTTTAAT--GCTTTGGAATaaaatgcaatttt--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      219529  6 +   258924 AAATTA-------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        64718  0 +   783054 C
e cb4.chrX              21207010 2035 - 21540570 I

a score=50787.000000
s ce10.chrX               764134 216 + 17718866 CAGACTGACTTCACCGACGATGAAATAAAGTCCGCTGGCAACGACAAAAACACCAAAACTGCCTTTCTTGACAAGCTGATCAAGATTCTAGATGACGGAAGTCTCAAAAACGTCAAAGCCGCCAAAATAATATCGGGGAAGGACGCGGAAGAAACCAACAAAGTGAG----------------TT---TACATTCTAT-----TAAC-------AAGAAATATCTGTAATGAA-AAAAGAAGGCGCAG
s caeRem4.Crem_Contig24   528453 201 -  1162296 cagaacGAGTTTACTGATGAGGAAATCAGTACAGCTGCCACTGATAAAGACACAAAAATagcatttctggaaaaactgaTCCAAATTTTGGACGATGGTAGTCTGGGAAATGTAAAAGCCATCAAAGTGTCGTCCGGGAAAGAGCCGGAGGAGACAAACAAAGTGAG----------------TG---TACATTCTAT----------------------------TAGTGAACAatgagagaattga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3527476 211 - 33334924 cagaacgaaTTCTCGAGCGATGAACTCAAGAGTGCAGGGAGTgataaaaacacaaaaaccgcatttttggaaaaactgataaagaTTCTGGATGACGGAAGTCTCAAAAATGTGAAAGCCGCAAAAGTAGTGGCAGGAAAGGATGCAGAGGAAACAAACAAAGTAAG----------------TC---TACAACCCAC----------------ATTCTATTTATTtgctgaa-aataagagaattg-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        64718 197 +   783054 cagaatgaTATATCGGAAGGTGAAATAGAAAGTGCAGGCAATGACAAAGACACGAAGCGTGACTTTTTAACGAAGCTAATCAAGCTATTGGATGACAGTAGTCTCAAATCAGTCAAAGTCACTGAGATTCTCGCAGGAAGAGACGCGGAGGGAGCTAATAAGGTAAA----------------TTAGACACAAC--------------------------------TGATGAG-AATTA-ATCAGCA-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      219535 244 +   258924 CAGAATGAGTTCTCTGACGAGGAATTATCAAAAGCCGGAAGCGATAAACAAACGAAAATtgcttttttggaaaagttgATCGCGATTCTGGATGATGGTAGCTTGGAAAATGTAAAAGCTTCGAAAATTATTACGGGGAAAAGTCCCGAAGAGACTAATAAGGTGAGaacttgttattttttttt---tacattttttactAGTAACGCTGCCACGCACATGtccgtggccga-ggaaaaacgcGTGG
i caeJap4.Scaffold54    C 0 I 111
e cb4.chrX              21207010 2035 - 21540570 I

a score=-11685.000000
s ce10.chrX               764350 125 + 17718866 AATTTTAAACAGAATTTACAATTCGATGTGAAGTCGCTTCAATCAAATTTTAAAAAATCTGGTCAATCAGaaatttttttttaac-ttaa-------aaaaaaaattCGATTTCTTCCGTAAATTATATCAAA
s caeRem4.Crem_Contig24   528654  86 -  1162296 aa--------aaaactcattgGTAGAAATGGAAT-GAGAAGAGCAA--TGTGGCGAAT-------GTCAAAAAGGATCG--GAATGTTAAcgtgaacagaaaaaag---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3527687  88 - 33334924 ----------aaaacctATTGTTGAAAT------------AAGCAA----TGGAGGAT-------GTCAGAAATGTTAGTAGAATGCTaat-----taaaaagaat-----ttcTTCCGGGAA--ATGtcgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        64915  60 +   783054 ----------gtaactttttattttatt----------------------tggaGCCT-------AGTAGAGGTATCCGTtgtactttca-------aaaaaaaat---------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      219779 111 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-666.000000
s ce10.chrX               764475 19 + 17718866 CTAAATTAGTGCCCTAATC
s caeRem4.Crem_Contig24   528740  9 -  1162296 --agaaaagca--------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        64975  0 +   783054 C
e caeJap4.Scaffold54      219779 111 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3527775  0 - 33334924 C

a score=-22605.000000
s ce10.chrX               764494 174 + 17718866 ATTTTTTCTATTTAAATTTTCTGATTTTTTGTGATAAAAATATGCTTAATAGTAAGATAAAGTATTTAAGC------CGTTTTCAAC-------TTGGTCAGTGCATTACCAGATTGGTCAGTGCTACACCAAGTTAGCCATTGCTTTCGCTCGTCTCAGTTCTTAGTGCTTTTTTTACCTTTTACA
s caeRem4.Crem_Contig24   528749  80 -  1162296 -------------aCATGTTCTTGTTTCCGG----------------------------AAGCACTTAAAT--------TTTGCCTC-------TTTGGAAACCTAATTTTGCTCTGGTTAATGTTA-------------------------------------------TTTTGTTAC--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        64975  33 +   783054 --------------agttttttagttttc---------------------------------------------------taccATC-------TTTGAATA--------------GGT--------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      219890  89 +   258924 --------------ATTGTTGTTATTGTA--------ACAAAGGCttgccggagagacgcagacattcagcggagcgcgttgccaataacgcaATTTAAAAAGTTACCTTA----------------------------------------------------------------------------
i caeJap4.Scaffold54    I 111 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3527775   0 - 33334924 C

a score=34283.000000
s ce10.chrX               764668 695 + 17718866  
s caeRem4.Crem_Contig24   528829 723 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3527775 696 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        65008 816 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      219979 656 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I

a score=-7882.000000
s ce10.chrX               765363 67 + 17718866 GTTTATCTTCAGTTCATTTTAAAAAATGTAGTGCACACTTAAATAATTTTCTGAAATTGAATTATCC
s caeSp111.Scaffold629   3528471 33 - 33334924 ------------------TTAAAATAAGTA--------Tgaactgattt--------tgaattgttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        65824 22 +   783054 ------------------TGAAACACAGTA--------------GATTTTC------TGA-------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      220635 16 +   258924 ------------------------------------GCTTAgcgtcttttc------t---------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   529552  0 -  1162296 C

a score=-2426.000000
s ce10.chrX               765430 35 + 17718866 GGCAAATTTTTGGCTTCAACATTGTTGGTTTACTC
s caePb3.Scfld02_62        65846 13 +   783054 ------------TCTTcagaactat----------
i caePb3.Scfld02_62     C 0 I 6
s caeJap4.Scaffold54      220651  7 +   258924 ---------ttttctt-------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3528504  0 - 33334924 C
e caeRem4.Crem_Contig24   529552  0 -  1162296 C

a score=-10618.000000
s ce10.chrX               765465 105 + 17718866 ----CTTCTTTGACCAACATTTTTTCAAATTCTAGAATAAGTTGTCAAAGTGAAATTTACACTGAGATTGAGATGATGATACACACAGTTTAATCAGCTTTTGACATAG
s caeRem4.Crem_Contig24   529552  28 -  1162296 ----CTACTTGAGCCAAAACT-----------AGGAATGAGTT------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        65865  31 +   783054 ----ataaaacagccAAATT--------------GAGTAAGTT----------------------------------------------------------TGACGT--
i caePb3.Scfld02_62     I 6 C 0
s caeJap4.Scaffold54      220658  27 +   258924 cttctttttttatctCAATTT----------------TGATCT------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3528504   0 - 33334924 C

a score=176967.000000
s ce10.chrX               765570 529 + 17718866  
s caeRem4.Crem_Contig24   529580 523 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3528504 526 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        65896 519 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      220685 519 +   258924  
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I

a score=-2933.000000
s ce10.chrX               766099 26 + 17718866 TTAATGAATTTCAGACAGTTTGAAAA
s caeRem4.Crem_Contig24   530103 10 -  1162296 ----------------TGTTTAAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        66415 24 +   783054 --GATAAGTATTCATCGGTGTAAAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      221204 10 +   258924 -----------catacaattt-----
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3529030  0 - 33334924 C

a score=-5624.000000
s ce10.chrX               766125 77 + 17718866 ACTTGGAAATGCCCGAAATTTTCCGGGCTCCTACGAATTTATACAGACAACGGAAGATGCTAGGGCTTTCAAATGAA
s caePb3.Scfld02_62        66439 29 +   783054 AT----------------------------------AATCGTACAG-----------TGCCAAGAAT---AATTCGA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      221214 22 +   258924 ------------ttgaaattttt-------------ttttaaacaaa------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3529030  0 - 33334924 C
e caeRem4.Crem_Contig24   530113  0 -  1162296 C

a score=698.000000
s ce10.chrX               766202 6 + 17718866 AGTTGT
s caeSp111.Scaffold629   3529030 6 - 33334924 GGTCGC
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      221236 6 +   258924 agttAT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        66468 0 +   783054 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   530113 0 -  1162296 C

a score=-4228.000000
s ce10.chrX               766208 63 + 17718866 TTTGGATGATGTATTGATACATACCGTATTTTCTCACTACCTTTGCACTACTTTACTTTGACA
s caeSp111.Scaffold629   3529036 12 - 33334924 TTTTAATTATTT---------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        66468  4 +   783054 ----AGTT-------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      221242  0 +   258924 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   530113  0 -  1162296 C

a score=209.000000
s ce10.chrX               766271 11 + 17718866 GCTTATGCATA
s caeRem4.Crem_Contig24   530113  7 -  1162296 GATTATG----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3529048 10 - 33334924 -CTAATGCATA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        66472  0 +   783054 C
e caeJap4.Scaffold54      221242  0 +   258924 C
e cb4.chrX              21207010 2035 - 21540570 I

a score=-2333.000000
s ce10.chrX               766282 52 + 17718866 TCGTGAATTTTTTTTAATCAACATTTTTTAATTGGGGTTTTTTTTATATTTA
s caeRem4.Crem_Contig24   530120 10 -  1162296 ----------------A--------------------------TTCTATCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        66472 19 +   783054 -------CTCCTTTCAA--------------------------TTATGTCCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      221242  0 +   258924 C
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3529058  0 - 33334924 C

a score=-9063.000000
s ce10.chrX               766334 72 + 17718866 ATTTCAGTGCACGTAAGTACTATTTTACACATAAAATCAATTTTTTGACATTACATTCGTTATAAAAAATAT
s caeRem4.Crem_Contig24   530130  4 -  1162296 ATAT--------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        66491 27 +   783054 ATTT-------------------TTGAGACA----------------ACCTTGTTTCTGTTA----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      221242 16 +   258924 ACTTCAAAATACGTAA--------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21207010 2035 - 21540570 I
e caeSp111.Scaffold629   3529058  0 - 33334924 C

a score=45769.000000
s ce10.chrX               766406 117 + 17718866 ATTTTTCAGGACGACATCGAATCAATGATTAAAGAACTGGAGCGATGGAGAAGTGAGCAGCGACGGAATGAGCAAGAGGATCAGAACAAAAAAGCGGCAGGATTCGGAGACAGCAG------------------------------------------------T
s caeRem4.Crem_Contig24   530134 158 -  1162296 -------AGGACGACATTGAGTCCATGATAAAAGAATTGGAACGTTGGAGAAGTGAACAACGACGGAACGAGCAAGAggaacaaaacaagaaatcttCTGGTTTTGGGGATAGTAGCAGGTACTAGTTGTTATAATAATATTGAGCtcatttaaataaaattttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3529058 117 - 33334924 ATTATTTAGGATGATATTGAATCAATGATAAAAGAATTGGAACGCTGGAGAGTTGAACAACGGAAAAATGAACAGGAAGAGCAGAATAAAAAGGCTTCTGGATTCGGAGATAGTAG------------------------------------------------C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        66518 153 +   783054 ------CAGGATGACATTGAATCAATGATAAAGGAACTCGAACGCTGGAGAGCTgatcagaagaagaatgagcaggaagaacaaaataaacaaTCTTCTGGGTTTGGCGACAGTAgcaggtgaaa------aaaaatatgtttcttcTATAGTGTTAAGGTTTCC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      221258 113 +   258924 ----TTTAGGAAAACATTGAATCAATGGTAAAAGAGCTGGAAAGGTGGAGAAGTGAACAACGTCACAAGGAGCAAGAAGATCAGAACATAAAAGCAGCGGGATTTGCGAATAGTAAT------------------------------------------------
i caeJap4.Scaffold54    C 0 I 1313
e cb4.chrX              21207010 2035 - 21540570 I

a score=62104.000000
s ce10.chrX               766523 127 + 17718866 AGACTCTACAACATCATCGCAAACTTACAAAAAGAAATCAATGACACGAAAGAAGAATTGAGCAAGGCTAGAGGACGAGTTCTCAACAATGAAAAACGCATTCAACTATTCATTTCCAATGTTTGAT
s caeRem4.Crem_Contig24   530292 127 -  1162296 agactatacAACATGATAGCCAACCTACAAAAAGAAATCAGTGATATGAAGGAAGAGTTGAGTAAAGCAAGAGGACGCGTTCTCAACAATGAAAAACGTattcaacttttcatttccaatgtttaat
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold629   3529175 127 - 33334924 AGACTCTATAATATGATAGCATCTCTACAAAAAGACatcaatgagaagaaagaggagttGAGTAAAGCAAGGGGACGTGTTCTGAacaatgacaaaaaaattcaactttttataTCTAATGtttaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        66671 127 +   783054 AGATTGTACAACGTGATAGCAAACCTTCAAAAGGAAATAGATGATATGAAAGAAGAACTTAGTAAAGCACGAGGTCGCGTTCTCAATAATGAACATAGAATAGAACTATTCATCTCTAACATTTGAT
i caePb3.Scfld02_62     C 0 I 41
s caeJap4.Scaffold54      222684 127 +   258924 agatttttcttcATAATCACAAATTTGCAAAAAGAAATCGAGCTCACAAAGGAGGAATTAATCAAAGCCAGAGGCCGTGTTCTGAACAACGAATCACGCATCCGCCAATTCATCTCAAATATTTAac
i caeJap4.Scaffold54    I 1313 C 0
e cb4.chrX              21207010 2035 - 21540570 I

a score=-3134.000000
s ce10.chrX               766650 35 + 17718866 CTTTCAGTTTTCC-----CTATTCAGAAGGAGATTTTCat
s caeRem4.Crem_Contig24   530427 34 -  1162296 ctttttgtttcctcGAGATTATCTATGAG------TTCAT
i caeRem4.Crem_Contig24 I 8 I 17
s caeSp111.Scaffold629   3529302 21 - 33334924 --ttttg-----------atattcattCC------TTCAC
i caeSp111.Scaffold629  C 0 I 14
s caeJap4.Scaffold54      222811 20 +   258924 ---------------aatttgtttaaaat-----ttttat
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        66798 41 +   783054 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-8912.000000
s ce10.chrX               766685 36 + 17718866 --tt---ta--ttgaattaaatgaaaaga--taaacaaataaatt
s caeRem4.Crem_Contig24   530478 40 -  1162296 --TTCTACAGTTCTCAACCCATAATTTCG---GTTTTTATTGATA
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold629   3529337 38 - 33334924 --TTCAATA--TCGcaatcgaaaaatata---atctTTCTCAACT
i caeSp111.Scaffold629  I 14 C 0
s caePb3.Scfld02_62        66839 24 +   783054 --TT---TA--TCGCATTAGTAA--------------TCTCAATT
i caePb3.Scfld02_62     I 41 C 0
s caeJap4.Scaffold54      222831 40 +   258924 tttt---ta--ttaaaatgactacttttacccaaaaaaataaatt
i caeJap4.Scaffold54    C 0 I 156
e cb4.chrX              21207010 2035 - 21540570 I

a score=-2886.000000
s ce10.chrX               766721 13 + 17718866 attttatattaCT---------------------------------
s caeRem4.Crem_Contig24   530518 46 -  1162296 ATGATGCACTCTTTTATTCATTCCCGTTTTAAtcactttatttatt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3529375 13 - 33334924 GTTAAACATTATT---------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        66863 13 +   783054 ATCCTACATGCCT---------------------------------
i caePb3.Scfld02_62     C 0 I 40
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-2141.000000
s ce10.chrX               766734 44 + 17718866 --------TAGAGCTTTGATACAATGTTACAAATTCGAATGAAAATTGAAGT
s caeRem4.Crem_Contig24   530564 35 -  1162296 --------tatagc-ATGCTACC---TTAAAAATCCCGTGAACGATA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3529388 48 - 33334924 TCGCCCAGTAAACC-TAGATTAA---TTCCAAAATCTGTAaagaatcaattt
i caeSp111.Scaffold629  C 0 I 3
e caePb3.Scfld02_62        66876 40 +   783054 I
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-11362.000000
s ce10.chrX               766778 115 + 17718866 TGCACCAATATGTTGTTGTAACTAAAACTAAAACT------AAAATGTAACTAAAATGTTGTAACTAACAAAATGTTTTGTTTAGGTCCAACACTATTTCTTATTGGAGACA--------AAGTGGAGG
s caeRem4.Crem_Contig24   530599  90 -  1162296 ----------TACAATAATCCTGAACTTTTTCAAT------GTACTAAACCGATGTAATCATCTCACATCAACAACATTTGCCTTTTAAATC------T--------CATCA--------AAGTGTGT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3529439 108 - 33334924 aatactaTATTACAATTTTGCATGATTACTGAAAT-------TACTGTGCTcagataatttttgaaactagataatttttttccatcatAAC------TTTTGTTGGCAATA--------TAATGGATA
i caeSp111.Scaffold629  I 3 I 5
s caePb3.Scfld02_62        66916 123 +   783054 TGTGCTTGTGTGTCGTTATCAACAATTGAAGAAACTCATCGATACAATAGGTATTTCATTTGTACTGATAAAtagtccttcttctttccaac------tttgatttttattaGCTCTtgttaatgaaaa
i caePb3.Scfld02_62     I 40 I 155
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=977.000000
s ce10.chrX               766893 17 + 17718866 AAATTTCCAATGCCACT
s caeRem4.Crem_Contig24   530689 14 -  1162296 ---TTTCTAAACCTGCT
i caeRem4.Crem_Contig24 C 0 I 93
s caeSp111.Scaffold629   3529552 17 - 33334924 agtttttgatttccacT
i caeSp111.Scaffold629  I 5 C 0
e caePb3.Scfld02_62        67039 155 +   783054 I
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-718.000000
s ce10.chrX               766910 76 + 17718866 CCTTAGCTAATTAATTATTAATTGTC----------TAAAAAGTCCTTTTCAGGATTAGTTTTAAATTCCCGAGCGTTCAACACTT
s caeSp111.Scaffold629   3529569 66 - 33334924 ---------ACTGGTTACTCATTTTCATGACAATGCCAATAGGCTCGTTCCA---TCAATGT--AATACTGTAATGTTCA------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        67039 155 +   783054 I
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I
e caeRem4.Crem_Contig24   530703 93 -  1162296 I

a score=-1433.000000
s ce10.chrX               766986 10 + 17718866 TTTTTGA------TTG
s caeRem4.Crem_Contig24   530796  7 -  1162296 tctttga---------
i caeRem4.Crem_Contig24 I 93 C 0
s caeSp111.Scaffold629   3529635 13 - 33334924 tattaaaaactaa---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        67039 155 +   783054 I
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-3725.000000
s ce10.chrX               766996 42 + 17718866 ACAATGGCTTTT----TCAAATTTACAATCAAGTTTATATCAAGTT------
s caeRem4.Crem_Contig24   530803 36 -  1162296 ----------------aaaatgtattcaacaCACTTATAATAttctaaaatt
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold629   3529648 46 - 33334924 atgaagaattttaCCTAAATTTTCCATAATAAACTAGTAAGAGTtt------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        67194 46 +   783054 AGTAATACtttcaaataataattcaaaaacaaaaatgtacaATTCT------
i caePb3.Scfld02_62     I 155 I 1
e caeJap4.Scaffold54      222871 156 +   258924 I
e cb4.chrX              21207010 2035 - 21540570 I

a score=-8598.000000
s ce10.chrX               767038 227 + 17718866 TATAATTTATTT-GTA-------------ACCCAAA-------CAAAGAAAAAGAAACGT-------TTTTAACAGACCAGTTTGTTGG-AATAACACAAAACTCAAG-ACGGATGGGATA----------------------AAAAAGTTGAATTAG-----------------TGCCCGATGGGCAGTCATTCGATGGTTTTGAAAAGAAAA------------------------AAGAACCCGCA-TGGGCAATGCAAAAAGGAAAAATGAACATTTTGATAAAA----TT---ACAATAACTTA--AAA--AACAACGA-----------AGGAGCAT
s cb4.chrX              21209045 262 - 21540570 TATTATTTATTG-ATA-------------TACAAAAAAGGCTttaaaagaatcaaaaaaggtTCTTGTTAGCACAGACCAGTTTGTTGG-AATAACACAAAATGTGAA-GAGGAGACAA----------ACGTAAAATGG---AACACATAAAACAAA-----ATAGCTGAATCAACCCCAATTAAAAACC-------------------AAAA---CGCAATCGATTGGATTAGGGTTGAAACCCGCA-TGGGCAATGCAGAACTTA--GATAGAA--------GGGA----CT---ACAATaacttatgaaaaaaataacaa-------taaaaaagaagg
i cb4.chrX              I 2035 C 0
s caeRem4.Crem_Contig24   530843 272 -  1162296 tattttttaccc-aaa-------------tacaaaa-------tgaaacagt-aaaatttgtTCGT-TTAAAATAGACCAGTTTGTTGG-AATAACACAAAACATGAAGGAGAAGATAAAAAAGTTTGGACTTagcaatc---aaaaattgaaaacaa-----atataCTAATCAAGTCCAACAAGCAGCC-------------------AGAAGATGGCAGtgtgctgaaaatgagtaagAACCCGCATTGGGCAATGCATAACGTAATGATgaca--------taaaaatttt---acaataattta--aaataaacaaCAG-------TTGCGAGGTAGG
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold629   3529694 203 - 33334924 cataatttattc-ata--------------------------acaaaataattaaa-----------ttGCAACAGACCAGTTTGTTAAGAAAAACACAGAACGTAAA-ATgtgaggaaaaaaattgggacTCTGCATAGATAGAAGTCTCAAACAAA------------GAGGTTGCttgatgaatgaaa-------------------agag------------------------aaaaacccGCA-TGGGCAGTGTATAA----------------------AAA----TT---ACAATAATTTA--ACAT-gacaacaa-------------aacaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        67241 231 +   783054 TCTCATTTATTCGATACCCAGTTGACATTCacaaaa-----cgcaaaaaaaatata-----------ttaatgAAAACCAGTTTGACGC-AATAACACAATTTGTAAA-ACAATAAAAGGAGAATAAatactc----------aaaaactcaaatgaattcaatcattttggCGATGCT-------------------------------AGAA------------------------ATGGACCCGCG-TAACCGCAGTGTAG----------------------AAA----TTTTCACAATAAGTTA--AAATCgagaacaatttttcgatgagGTATTAA
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold54      222871 156 +   258924 I

a score=39321.000000
s ce10.chrX               767265 59 + 17718866 TT---CCTTAAGTAGACTTCTT--CTTGATAACATTTGGGAAGCGAGCCTTTGATTGTTGGAAG
s cb4.chrX              21209307 62 - 21540570 ttTCAGTTTAAGTGGTCTTCTT--CTTGATGATGACTGGAAAGCGGGATTTGGATTGTTGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   531115 59 -  1162296 AC---GTTTAGGTGGTCTTCTTGACTGGCT--TGTTTGGGAAGCGGGCCTTGGATTGCTCAAAG
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3529897 59 - 33334924 at---ttttatgtGGTCTTCTT--CTTGACGATATTTGGGAAACGAGCTTTCGATTgttggaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        67472 59 +   783054 TT---GCTTAAGCCGTCTTCTT--CTTAACGATGTTTGGGAAGCGAGCCTTAGATtgttggaag
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      223027 59 +   258924 TT---GTTTATGTTGATTTCTT--CTTGTTGATGGCTGGGAAACGGCTCTTCGACTGTTGCAAC
i caeJap4.Scaffold54    I 156 C 0

a score=910.000000
s ce10.chrX               767324 1 + 17718866 A
s cb4.chrX              21209369 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3529956 1 - 33334924 a
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        67531 1 +   783054 a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      223086 1 +   258924 A
i caeJap4.Scaffold54    C 0 C 0
e caeRem4.Crem_Contig24   531174 1 -  1162296 I

a score=103754.000000
s ce10.chrX               767325 115 + 17718866 GAAGGAAGGATCCGAGAGTGGTTGGGGCGACGATGAGGAAGAAGACGAGGAAGTAGGTGTACTTTGGAGCAAATCGTCTGTCGTACTCGCGTTGGCGGTAGATGTATCCTGG--------------AAA-----
s cb4.chrX              21209370 115 - 21540570 GCAAGAAGGATCCGAAAGTGGTTGGAGCaatgatgaggaagaagacaaTGAAATAGGTGTATTTTGGAGCGAATCTTCTGTCGTACTCGCGTTGGCGGTAAATGTATCCTGT--------------AAG-----
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24   531175 115 -  1162296 GAACGTAAGATCCGAGGGTGGTTGGGGCGATGAGAGCGAAGAAAACGAGGAAGTAGGTGTACTTTGGAGCGAAACGTCTGTCGTACTCCTTTTGGCGGTAGATGTATCCTGG--------------AAA-----
i caeRem4.Crem_Contig24 I 1 I 234
s caeSp111.Scaffold629   3529957 114 - 33334924 gaaggaacGATCCAAGGGTAGTTGGGGCaacgatgaagaagaaaatgaggaagtAGGTGTACTTTGGAGCGAAACGTCTGTCGTACTCGCGTTGACGATAGATGTATCCTAA--------------AA------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        67532 128 +   783054 ggaagaatgaTCCAAGGGTAGTTGGTGCAACAACgaggaagaaaacgaagaagtaTCCGTACTTTGGTGCAAATCGTCTGTCGTATTCACGTTGTTTGTAGAtgtatcctgaaaaaaaatttaatgaa------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      223087 120 +   258924 GGATGAACGATCCAAGAGTGGTTGGGGTGATGAGGGCAAGGAAGACGAGGAAGAAAGTGTACTTTGGAGCAAATCGTCTGTCGTATTCGCGTTGGCGGTAGATGTATCCTGA--------------AAGGGAAA
i caeJap4.Scaffold54    C 0 C 0

a score=-5346.000000
s ce10.chrX               767440 20 + 17718866 -TTCATTTGATTGTTAAACAG
s caeRem4.Crem_Contig24   531524 13 -  1162296 --------TGCGCTTAATCAG
i caeRem4.Crem_Contig24 I 234 I 43
s caeSp111.Scaffold629   3530071 13 - 33334924 ----TTATGATGtttaa----
i caeSp111.Scaffold629  C 0 I 84
s caePb3.Scfld02_62        67660 17 +   783054 ----ataTGGCGCTTGAGTTT
i caePb3.Scfld02_62     C 0 I 48
s caeJap4.Scaffold54      223207 14 +   258924 tttattttagtatt-------
i caeJap4.Scaffold54    C 0 C 0
e cb4.chrX              21209485  8 - 21540570 I

a score=-36348.000000
s ce10.chrX               767460  74 + 17718866 CACAGGAAAACC-----------CAGATTAA-------TGATTTTTTGGTG--------------------------CTTCTCAA----------CCGCCTCCAACAAAAACTA-------------------CAA------------------AAT------TTCAAATA
s cb4.chrX              21209493  98 - 21540570 AGTAAAACATTC-----------CTCGTTGA-------TGAAAATTCAATGGGAAATA-----------------TTCCTcataa------------------aactacaaaaat--acgACTCGCTTCTATTCTA------------------AACCTcctatcaaaaaa
i cb4.chrX              I 8 I 7
s caeRem4.Crem_Contig24   531580 153 -  1162296 AGCAACAAATTTGGCTCAGGTAGCCAGTTGACATGCACCGATAAGCCAATAGGCACTAACTGAAGCACCAATCTGTTCTTCACGATAACCAGCGGCAGTTTGTCATCACGACGATTCTCATATCGCTTCACAGTAA------------------AATCATTTATCCATCTA
i caeRem4.Crem_Contig24 I 43 I 5
s caePb3.Scfld02_62        67725 133 +   783054 TACAAAAggttctgttt------tttgttta-------ggAGGTGTTCTGATGTAATG-------------------ACTCACAA---CCACAAATCATTTGCAAACTagacaa---acatttttcttaGATTCTAGGGTCAATTATGCAAAATAATCTTATCTTCAAACA
i caePb3.Scfld02_62     I 48 I 10
s caeJap4.Scaffold54      223221  24 +   258924 ---------------------------ttag-------tgttttgttttttggttctT-----------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3530084  84 - 33334924 I

a score=238666.000000
s ce10.chrX               767534 243 + 17718866 ACCAACCTTCTCCAGGAGTGTTGGTAAGGGTGACGTGATGGTTCTCGTTGTCGGTGTAGTAAGTGACCTGGGCGGCGGTGTAGTTGAAGAATCCGAAGGCTCTTGGGCGGATGACAACTGAGTGGGTCACGTTGCTTCCGGCTGGGATCTGCTCGAAGTGCACGAAGAGAAGTCCCTTGACGATGTCGAACGAGTTGGTTGGGAACGAGTGACGATCGTCGATGGTGACCTG-------------GAGATAAGATA
s cb4.chrX              21209598 243 - 21540570 tcgtACCTTCTCCTGGGGTGTTGGTCAAGGTTACGTGAAGGTTCTCGTTATCAGTGTAGTAGGTGACCTGAGCAGCGGTGTAGTTGAAGAATCCAAAGGCTCTTGGGCGGATGACGACCGAGTGGGTCACGTTGCTTCCTGCTGGGATTTTCTCATAGTGAACGTGGAGAAGTCCCTTGACGATTTCAAAGGAGTTGGTTGGGAAAGAGTGGCGATCGTCGATAGTGACCTG-------------AATAttatgtt
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   531738 256 -  1162296 TCTTACCTTCTCCAGGAGTGTTGGTGAGGGTGACATGAAGGTTCTCGTTGTCAGTGTAGTAGGTGACTTGAGCGGCGGTGTAGTTGAAGAATCCGTAGGCTCTTGGGCGGATGACGACGGAGTGAGTCACGTTTCCTCCGGCTGGGATCTTCTCGAAGTGAACGTGGAGAAGTCCCTTGACGATTTCAAAGGAGTTGGTTGGGAACGAGTGACGATCGTCGAGGGTGACCTGGAAAATTACATTTAGGATTATGAC
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold629   3530168 230 - 33334924 ATTTACCTTCTCCAGGGGTGTTGGTGAGGGTGACATGGAGGTTCTCATTATCGGTGTAGTAAGTGACTTGAGCGGCAGTGTAGTTGAAGAATCCAAACGCTCTTGGACGGATAACAACTGAGTGGGTCACGTTTCCTCCGGCTGGGATCTTCTCGTAGTGAACATGGAGGAGTCCCTTGACAATTTCGAAAGAGTTGGTTGGGAAAGAATGACGATCATCGATGGTGACC--------------------------
i caeSp111.Scaffold629  I 84 C 0
s caePb3.Scfld02_62        67868 230 +   783054 AATTACCTTCTCCAGGAGTGTTGGTGAGAGTGACGTGGAGGTTCTCATTGTCAGTGTAGTAGGTGACCTGGGCAGCGGTGTAGTTGAAGAATCCGTAGGCTCTTGGACGGATGACGACTGAGTGGGTTACATTGGTTCCTGCTGGGATCTTCTCATAATGAACGTGGAGGAGTCCCTTGATAATTTCGAAAGAGTTGGTTGGGAAGGAGTGACGATCGTCGATTGTCACT--------------------------
i caePb3.Scfld02_62     I 10 C 0
s caeJap4.Scaffold54      223245 239 +   258924 ----ACCTTCTCCAGGGGTATTGGTGACCGAGACGTGAAGATTCTCGTTGTCAGTGTAGTAGGTAACCTGAGCAGAAGTGTAGTTGAAGAATCCGTAAGCTCTTGGGCGAATGACAACAGAGTGGGTGACATTGGCTCCGGCTGGGATTTGTTCGAAATGCACGTGAAGGAGTCCCTTGACAATGTCGAAGGAGTTGGTTGGGAAGGAGTGACGATCATCGAGGGTGACCTGGAAA---------AAGAATA----
i caeJap4.Scaffold54    C 0 I 33

a score=-4405.000000
s ce10.chrX               767777 32 + 17718866 AATGT---------------------------------TCTTTGTAAAAAATAGAAAGACGATAT
s cb4.chrX              21209841 28 - 21540570 tttgt--tgtttttacttt-------------------tttcc-----------aaagGG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   531994 52 -  1162296 TCTATAGTGATTTCAGTTCAAGAAACTGCCATGTAGTGTCTCC--------TaaaaaaaC-----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        68098  0 +   783054 C
e caeJap4.Scaffold54      223484 33 +   258924 I
e caeSp111.Scaffold629   3530398  0 - 33334924 C

a score=133699.000000
s ce10.chrX               767809 267 + 17718866 TTACCTTCTGCGCTGGCTTGTCTCCGACGTTGTAGAGTCCGTATTCCAAGACAAAGTCCATGTTCTCCACGGCATATGTGGAGAGTGGCTGCTTGTGGGCAAGGATGAAGGCATCCTGGAAATTGT-TGAAATTTGAATTTAAAAAACAAGTTTTAAATTTTACAAAAACAAGAAAAAATTACA----------AACCCTGGTCTGAGTTCCTACATCAACGCAGCTGACCACTACAAAAAGTAGGGCGAAGAGTGAGAATTTCATTTTTCTGAAAAA
s cb4.chrX              21209869 241 - 21540570 TTACTTTTTGGGCTGGCTTATCTCCGACGTTGTAGAGTCCATATTCCAAGACAAAGTCCATGTTCTCAACTGCATAAGTGGAAAGTGGTTGCTTGTGAGCAAGAATAAAAGCTTCCTAAAAT--------------GTATCAATGTATTTTTCACAGATTCTTCTTGAAA----------TACG----------TACCTTTGTTTGAGTACCAACTTCAGCGCAGTTAACTGCCGCAAACATCAGAGAAAAGAGTAAGAACTTCATATCTGCaaa---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   532046 247 -  1162296 ATACCTTCTGGGCTGGCTTGTCTCCAACGTTGTAGATTCCGTATTCCAAGACGAAGTCCATGTTCTCCACTGCGTAGGTCGAGAGTGGCTGCTTGTGGGCCAGAACGAAGGCGTCctgcaa---------------aaatcaata-attatccCCTGCtcatcaaacaaa-----aaatgtacG----------AACCTTGGTTTGAGTCCCAACATCAGCGCAGGTAACCGCTACAGCCAGCAGCGCGAAGAGTGAGAACTtcatgtttctgaaaac
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3530398 241 - 33334924 -----TTCTGGGCTGGTTTGTCTCCAACGTTGTAGAGTCCGTATTCCAACACAAAGTCCATGTTTTCGACGGCATAGGTCGAGAGTGGCTGCTTGTGGGCAAGCACAAAGGCATCCTGAA----------------CGATTAATTACTGGTTTGG-AATTTCCAGAGAAG-----------ACGGTTCATTGATTACCTTGGTTTGAGTACCAACATCTGCGCAAGTCACTGCCGCAACGAGCAGAAAGAAGAGTGAGAAttgcat-tttctgaa---
i caeSp111.Scaffold629  C 0 I 54
s caePb3.Scfld02_62        68098 238 +   783054 -----TTTTGAGCTGCCTTGTCTCCGACGTTGTAAAGCCCGTATTCCAAGACAAAGTCCATGTTCTCCACGGCATATGTGGAGAGTGGTTGTTTGTGTGCAAGAATGAATGcgtccttcaaaaaat-t--cttatgagattaatcaaaaatttgattattttcaca----------------------------TACCTTAGTTTGAGTGCCGACATCTGCACCATTGATGGCGACAGCCAGGAGGGCAATGAGCAAAAACctcat-tctgtaaa---
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold54      223517 243 +   258924 TCACCTTGTGCGCTGGCTTGTCTCCAACGTTGTAAAGTCCGTACTCCAAAACAAAGTCCATGTTTTCTACGGCATACGTCGACAAAGGTTGCTTGTGGGCCAAGATGAAGGCATCCTAAAAACAGTAT--------AAAttaattga--atttaaaaatttaggcTAAAT------------------------TACTTGAGTCTGAGTTCCAACCTCTGCACCATAAGCCACTACCACAAGAAAGACAAGTAGAGAATAATTcat-tttctgtaaaa
i caeJap4.Scaffold54    I 33 C 0

a score=-9649.000000
s ce10.chrX               768076 63 + 17718866 AAAAGAACAATTTAATTTAAACTATTACAGTGGAAAACAGGCAACAAAAAGTAGGC----AGATTCG
s cb4.chrX              21210110 59 - 21540570 aaaaCTA-GAGTTAATTAAAAACCACATCATTGAA---AAGCAACATTTAACGAGG----AAATCCA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   532293 65 -  1162296 aacacaa-aatttgatataaacttgcaattttcaa-tcaaaaaacgtGTAACAATGCCAAGAGGCCA
i caeRem4.Crem_Contig24 C 0 I 10
s caePb3.Scfld02_62        68337 48 +   783054 -aaatca----ttgattaA------CGTTTTGATA---AAGCTATATAAAAACAT-----AAGTTCG
i caePb3.Scfld02_62     I 1 I 1
s caeJap4.Scaffold54      223760 44 +   258924 aaaataaaaaattaatc----------ttTTTAAG---GAGAAAAATGTCGACAAG----A------
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3530639 54 - 33334924 I

a score=-14405.000000
s ce10.chrX               768139 32 + 17718866 --AAGAAGGCAGACTAAAAGAG---------TCGGACAATAA-A
s cb4.chrX              21210173 32 - 21540570 -----------AACGACAAATGGTGTATAC-TCGCACAATAGAA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   532368 40 -  1162296 --AAAAACGCGAGAGGAGAACTGTGAGGAG-GCCAACAATAG-A
i caeRem4.Crem_Contig24 I 10 C 0
s caeSp111.Scaffold629   3530693 41 - 33334924 --aagacaaaagaaaaagaatattgtCTCTGACTCAAGAAAA-G
i caeSp111.Scaffold629  I 54 C 0
s caePb3.Scfld02_62        68386 38 +   783054 --ATGAAAGAAGACAGTAAATGATGTATCT---TTGCAATTA-A
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold54      223804 20 +   258924 ACCAAAAGAGGGACaagaaa------------------------
i caeJap4.Scaffold54    C 0 I 49

a score=5688.000000
s ce10.chrX               768171 41 + 17718866 CGCGACGTGCATTG-------CCCCGTCGTCAGTGGGGG--GCACGCAAA
s cb4.chrX              21210205 38 - 21540570 GGCGGTGTGCG----------CATTAACGTTGGCCTCGG--GCACGCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   532408 39 -  1162296 TGCAACGTGCAC---------CGCTGACGTTGGCCGAGG--GGACGCAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3530734 40 - 33334924 GCGAATGTGTGT--------GTGTACTCGCTGTCGGAGG--GCACGCAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        68424 50 +   783054 ACCAACGTGCATCGCCTCTCTTGTTGACGCTGTTCTCGGACACACGCAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      223824 49 +   258924 I

a score=-32173.000000
s ce10.chrX               768212 282 + 17718866 ATACT----ACAGCAGTGCATAAGATACGCAGCATCG--T---GTTTGCAGTCCGAG-TACGGTGACACTCGTTTCGGCGACCCCCCTGCAGCTGTC-----CGGTGGAGCGCGTTTGCTCACCTCGTCTCCCCCCTCGATTA---------------CCACGTAT-TTTACACA-CTTTCG------------ATTGTTTTT------------------------CACTGGTGCTAATGGATTTCG--------------------CGTAGTTTTTG--CGATTTC---------------ATCATGTTTTTCTAGCGGAATTGATT----TTGTT-------------------------------TTGAAGAACTCtaatattt-ttgattttttaatttta-------------------aaacattatttaGACTT
s cb4.chrX              21210243 322 - 21540570 ACACTGCACGCACACACGCATAAGACGCGCAGCAATG--GGTCATTTGCAGTTTGAC-TACGGTGTCACTCGTTTC------------CTGTGTGTT-----CAACGGGGCGCGCTTGCTTCACTTCTCGCCCGCCGCAATCA---------------CCACGTAT-TGTAAAAACGCATTG----TTTTAC--GTTGTTTTC-------------------------AATACTTGTGGTGGGTTCTGTCGGAAACca-------atagaaatttcaaaacaaatttc----------------------tttTATAACCGCGTTGATTCgtattttacaatttttcatag--cgaaaaaaaaacagatgggAAAAA------------------TATCAATGTGA---AAATCTTTTGTTCAG-TATTAGGAATCAATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   532447 328 -  1162296 ACACT----ACACACACACGTAAGATACGCAGAAACG--G---CTTTGCAGTTCGATATACGGTAACAGTCGTTTC------------GCGTGTGTC-----CGagagagcgcacttgcatcatTTTTCGCTCGCCGCTATTA---------------CCACGTAT-ATTAGTCa-gttttg----tt------gttattttcgtg--------tttcaaaaaagaaaaaaagtttttctgaatttta---------a-------atctgaatttttaa--aaatttt----------------------tctaccaaaagtgtagaat----ttttgtaaattgcTATAGATTTTAACAAAAGTAAAAGCGCAAAACGTGA--------Ttctctttcaatgaaaaagaaaaattcaaatcag-aaaCAAGACTTGATAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3530774 217 - 33334924 ACACT----ACAGCAACACGTAAGATACGCAGGAACG--C---GTTTGTAGTCCGAG-TACGGTGACACTCGTTTC------------ATGTGTGTCGAGTACGCCAGAGCGCGTTTGCTTTCTTTTACCCCAACCGCTATTA----------------CACGTAG--------A-ATATTA----GTTTTCCCGTTGTTTTT-----------------------------------------------------------------------CTGAG--CGGTTT----------------------------CAAACG---GAATT----TTTCG---------------------------------gtaaaa-----------------ttattaatttca----------------cgtttatgaaatttgttgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        68474 228 +   783054 ACACT----ACACCACCACGTTAGATACGCAGGCACTACA---CTTTGCAGTTCGGG-TACGGTAACACCCGTTTC------------ACATGTGTCT----CAATAGGGCGTGCTTGCTTTACTTTCTGGCGAATAAAATTA---------------CCACGTAGTAGTAGATG-atatcg----gttttt---ttgttttg-----------------------------------------------------------------------ataaa--aaattt----------------------------tatttgcttatagt----tttcg----------------------------aattagaaaaa-----------------ttttcaacttcg----------------aa-aaataaaattaggtttt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      223873 356 +   258924 ATACA----ACATTATCGCGTAAGATACGCAGAATCG--T---GTTTGTAGTCCGAC-TACGGTCACACTCGTTAC-----------TGCAGGTGTG-----CGCTAGAGCGCATATCCTGAG---TACACTCGGTTTGATTAGattgaaaatattttccaCGTAT--TTATACA-TGTTTGCATGGTTTTT--ATTGTTGCGGCGATGTCCGTCTCTGTCCATGCTCTCTCATTTGTCCCAAATTTGTTGCTAACTATTCTTGCGTGGTCACCCCGGA--AAGTCATcccgcacggcaccccagccttcttccaaaattgtttctatc----tggcg----------------------------catttttaaaaccctaaggctcggtcattttctgacaaaa----------------ag-gccttgtttttggctt-
i caeJap4.Scaffold54    I 49 I 46

a score=-12521.000000
s ce10.chrX               768494 30 + 17718866 CTTTT-CCGCGGA-----------------------------------GTTTTCTCTAGTTTT---TAA
s cb4.chrX              21210565 41 - 21540570 TATTT---GCAGGACCGTATTCAGTTAAT-------------------GCTAACTAATATTTT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   532775 66 -  1162296 AACTTTGAGCAGAAAGTTAATTATTCAGTAGCCTTCATGAAATTATTGgcttattattgattt---ttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3530991 26 - 33334924 ttttc-------------------------------------------tctcagatttccattcttctt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        68702 26 +   783054 ttttt-------------------------------------------gtttttttttgttttattttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      224229 46 +   258924 I

a score=131615.000000
s ce10.chrX               768524 554 + 17718866  
s cb4.chrX              21210606 384 - 21540570  
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24   532841 436 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 94
s caeSp111.Scaffold629   3531017 520 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        68728 459 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      224275 477 +   258924  
i caeJap4.Scaffold54    I 46 C 0

a score=-5725.000000
s ce10.chrX               769078 35 + 17718866 CATTTTTTACTTTTATACATTGCGTAACTTTTAAA------
s cb4.chrX              21210998 26 - 21540570 ----ACTGTGTTTCACCCAAG-----AAATGCAAA------
i cb4.chrX              I 8 I 9
s caePb3.Scfld02_62        69187 23 +   783054 ------ggattttcaaacaat------cacgcaaa------
i caePb3.Scfld02_62     C 0 I 3
s caeJap4.Scaffold54      224752 29 +   258924 -------GATCTTTGGATAAT-----ATTAGTATTGGCCTT
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3531537  0 - 33334924 C
e caeRem4.Crem_Contig24   533277 94 -  1162296 I

a score=192173.000000
s ce10.chrX               769113 228 + 17718866 AA------------TTTTAGCCAGTGTGGTCACGCGACTGGGAGCTCCAAGTCTCATTCAAGGTTACTGGAAGCACTGGAGATTTGTTCGGAGATGGTATGGCAATTTGGTACACGTCGGAGCCAAACATTTTGGGACCAGTGTTCGGTGGAAAGGATTACTTCCGTGGATTGGCTGTGTTTTTGGACACTTATAGTAATCATAATGGGCCACATCAGGTATGAAAATT-------ACCGAATTAGA-
s cb4.chrX              21211033 223 - 21540570 aatttt--------tttcagcctgTCTGGTCTCGCGACTGGGAACTTCAAGTTTCTTTCAAAGTAACCGGAAGTACTGGAGATTTGTTCGGAGACGGAATGGCCATTTGGTACACTTCCGAACCAAACCACTTGGGGCCAGTTTTTGGTGGAAAAGACTATTTCCGTGGTTTGGCGGTTTTCCTGGACACGTACAGCAATCACAATGGACCACATCAGGT----------------ATGGacacaaa-
i cb4.chrX              I 9 I 488
s caeRem4.Crem_Contig24   533371 230 -  1162296 AA------------TTTCAGCCAGTATGGTCTCGCGACTGGGAGCTCCAAGTATCGTTCAAGGTGTCTGGAAGCACTGGAGATTTGTTCGGAGATGGAATGGCTATTTGGTATACCTCGGAGCCCAACCACTTGGGACCAGTTTTCGGAGGAAAAGACTATTTCCGTGGACTCGCTGTGTTCTTGGATACTTACAGCAATCATAATGGACCACATCAGGT-----AAATGTAAGAAATCGATATCGA-
i caeRem4.Crem_Contig24 I 94 I 14
s caeSp111.Scaffold629   3531537 219 - 33334924 ----------------TCAGCCAGTGTGGTCTCGAGATTGGGAACTTCAAGTATCGTTCAAAGTGACCGGAAGTACTGGAGACTTGTTTGGAGATGGAATGGCTATTTGGTACACTTCTGAACCGAACCATTTGGGTCCagtttttggaggaaaagaCTATTTCCGTGGACTCGCTGTTTTCTTGGAcacttacagtaatcataATGGACCACATCAAGT-----GAGC-------TTTCGTTTTAA-
i caeSp111.Scaffold629  C 0 I 56
s caePb3.Scfld02_62        69213 232 +   783054 aattttttgtatgattTCAGCCTGTATGGTCTCGTGATTGGGAACTACAAGTGTCGTTCAAAGTGAGTGGCAGCACAGGAGACTTGTTCGGAGACGGAATGGCTATTTGGTACACATCGGAACCAAATCAATTGGGACCAGTATTTGGAGGAAAGGATTATTTCCGAGGACTTGCTGTTTTCTTGGATACATACAGTAATCATAACGGCCCACATCAGgt-----attt-------ttccattt----
i caePb3.Scfld02_62     I 3 I 5
s caeJap4.Scaffold54      224781 221 +   258924 -------------GTTTCAGCCAGTTTGGTCGCGCGACTGGGAGCTTCAAGTATCGTTCAAAGTTGCCGGAAGTACAGGAGACTTGTTTGGCGACGGAATGGCTATATGGTACACATCCGAGCCAAATCATTTGGGACCAGTTTTCGGTGGCAAAGATTATTTTAGTGGGCTTGGTGTTTTCCTCGACACCTACAGTAATCATAATGGACCGCATCAGGT-------AT-------TTAGTTTTTAAa
i caeJap4.Scaffold54    C 0 C 0

a score=-638.000000
s ce10.chrX               769341 5 + 17718866 -TTAAA
s caeRem4.Crem_Contig24   533615 5 -  1162296 -TGata
i caeRem4.Crem_Contig24 I 14 C 0
s caeSp111.Scaffold629   3531812 5 - 33334924 -TAATA
i caeSp111.Scaffold629  I 56 C 0
s caeJap4.Scaffold54      225002 5 +   258924 ttgaa-
i caeJap4.Scaffold54    C 0 I 26
e caePb3.Scfld02_62        69445 5 +   783054 I
e cb4.chrX              21211256 488 - 21540570 I

a score=-11698.000000
s ce10.chrX               769346 38 + 17718866 TCAAAATTT--------------------CGACTTTAGAAGTTTTTAAATA--------TCCGCTT------------------------
s caeRem4.Crem_Contig24   533620 55 -  1162296 gaaaaatag------------------------tgaaagaGGATGGAAAAGCCTTTTGCAccatttctatat-----------tttctct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3531817 72 - 33334924 GGTAAAttaactcattttttaacTGTCGCTGGCTAAAAAAGTATGCAA-----------GTCATTTAGAGGTGCCGGTCAATC-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        69450 22 +   783054 ---------------------------------------AACATGAAA-----------ACCACAGAAAGGT------------------
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold54      225007 26 +   258924 I
e cb4.chrX              21211256 488 - 21540570 I

a score=273.000000
s ce10.chrX               769384 1 + 17718866 A
s cb4.chrX              21211744 1 - 21540570 A
i cb4.chrX              I 488 C 0
s caeSp111.Scaffold629   3531889 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        69472 0 +   783054 C
e caeJap4.Scaffold54      225007 26 +   258924 I
e caeRem4.Crem_Contig24   533675 0 -  1162296 C

a score=164023.000000
s ce10.chrX               769385 186 + 17718866 TGA---------------------------TTGCAGCACGGTCATCCATTCATTTCTGCAATGGTTTCTGACGGCAGTCTTCACTATGACCACGACAAAGACGGTACCCATACTCAGCTCGGAGGAGAAAATACTGGATGTACTGCCAAGTTTCGTAATAAGGATCATGACACTCAAGTTCTTATCAGATATGTTGGAGACACTCTTTCGGTA
s cb4.chrX              21211745 185 - 21540570 TTA---------------------------CTTTAGCATGGACATCCCTTCATTTCGGCAATGGTATCTGATGGGAGCCTACACTACGACCACGACAAAGATGGCACTCACACTCAACTCGGTGGAGAGAACACTGGATGTACTGCCAAGTTCCGTAACAAGGATCACGACACTCAACTTCTCATTCGATACGTCGGGGACACTCTTTCTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   533675 183 -  1162296 ------------------------------tttcagcaCGGTCACCCATTCATCTCCGCTATGGTCTCCGACGGAAGCTTGCATTACGACCACGACAAGGACGGAACCCACACCCAACTCGGAGGAGAGAACACCGGATGTACTGCCAAGTTCCGTAACAAGGATCACGACACCCAACTTCTGATCCGTTATGTTGGAGACACTCTTTCCGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3531890 213 - 33334924 TaataaatacggtatttccaaattttttcatttcagcaTGGTCATCCATTCATCTCAGCAATGGTTTCTGACGGAAGCTTACATTACGATCATGATAAAGATGGAACACACACTCAACTAGGAGGTGAAAATACGGGATGCACGGCCAAATTTCGCAATAAAGAACACGATACACAACTCTTAATCAGATATGTTGGAGATACTCTTTCGGta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        69472 183 +   783054 ------------------------------TTTCAGCATGGTCATCCATTCATTTCTGCTATGGTTTCTGATGGCAGCCTACATTACGATCATGATAAGGATGGAACACATACCCAACTTGGAGGAGAGAACACTGGTTGTACAGCCAAATTCCGTAACAAAGATCATGACACTCAGCTTTTGATCAGATACGTTGGAGATACACTATCGGTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      225033 185 +   258924 ----------------------------TAATTTAGCACGGTCACCCATTTATATCCGCGATGGTTTCCAATGGAAGCTTGCACTATGATCACGACAAAGACGGAACGCATACACAGTTGGGAGGAGAGAATGTGGGGTGCACTTCAAAGTTCCGTAATAAGGATCATGATACGCAGATTTTGATTCGATATGTTGGAGACACTTTGTCGGTA
i caeJap4.Scaffold54    I 26 I 698

a score=-13131.000000
s ce10.chrX               769571 36 + 17718866 -----------TGTTAAACCTGAGTAAAATA-ACAACTATAGCTGCTC
s cb4.chrX              21211930 35 - 21540570 -------TCGTAACTAGGACGAAtaagcattttcaaaaa------gtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   533858 38 -  1162296 -TGTCAATCGTCATTGATAC-------CTCTTTCAATCATA--TTTTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3532103 39 - 33334924 atcatttttatgtttcatttgaaagaaaacaaagaaaaa---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        69655 33 +   783054 -----------GGCtcaatctaaaaaaaacattcgatta----tcttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      225218 698 +   258924 I

a score=182361.000000
s ce10.chrX               769607 194 + 17718866 TATT-TCAGATTTTCTCTGACATTGAGAACAAAGGAATATGGAATTTGTGTATGAGCGTGAACAATGTGCAATTGCCAACCGGATATTACATCGGAGTCAGTGCCGCAACGGGAGACTTGTCCGATGCTCATGACGTTGTGTCCTTGAAAATGTTCGAGCAGGAGTTTGCTCATGTTGAGCGTGTTGGAGAGGTA
s cb4.chrX              21211965 194 - 21540570 tatt-tcagattttcaccGACATTGAGAACAAGGGTATCTGGAATCTGTGTATGAGCGTGAACAATGTGCAGCTTCCAACTGGATACTACTTCGGAATGAGTGCTGCCACTGGAGACTTGTCTGATGCTCATGATGTGGTGTCGGTTAAAATGTTTGAGCAGGAGTTTGCTCATGTTGAACGCGTTGGAGAGGTA
i cb4.chrX              C 0 I 123
s caeRem4.Crem_Contig24   533896 194 -  1162296 TATT-CCAGATCTTCACCGACATTGAAAACAAGGGAGTGTGGAACTTGTGTATGAGCGTCAACAACGTTCAACTGCCAACTGGATATTACATCGGACTTTCTGCTGCTACTGGTGACTTGTCGGATGCCCATGATGTTGTTTCTGTCAAGATGTTTGAGCAAGAGTTCGCCCATGTTGAGCGAGTCGGAGAGGTT
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3532142 190 - 33334924 -----tcagattttcaCTGACATCGAAAATAAAGGACAATGGAACTTGTGTATGAGCGTAAACAACGTACAACTTCCAACTGGATACTATTTTGGACTTAGTGCAGCTACTGGAGATCTCTCTGACGCTCATGATGTGGTTTCTGTGAAAATGTTCGAGCAAGAGTTTGCACATGTCGAGAGAGTTGGAGAAGTG
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_62        69688 195 +   783054 aattttcagattttcaccGACATTGAGAACAAGGGTGTGTGGAATTTGTGTATGAGCGTGAATAATGTCCAACTTCCGACTGGATACTATATTGGACTCAGTGCTGCGACTGGAGACCTTTCCGATGCCCATGATGTTGTCTCTGTGAAAATGTTCGAGCAGGAGTTCGCACATGTTGAAAGAGTTGGAGAGGTC
i caePb3.Scfld02_62     C 0 I 3
s caeJap4.Scaffold54      225916 194 +   258924 TATT-TCAGATTTTCACCGACGTTGAAAATAAAGCCGTCTGGAACCTTTGCATGAGCGTCAACAACGTTCAACTTCCAACCGGTTACTATTTCGGAATGAGCGCTGCAACTGGAGACTTATCAGATGCGCATGATGTCGTGTCAGTGAAGATGTTTGAGCAAGAATTTTCTCACGTGGAAAGAGTTGGCGAGGTA
i caeJap4.Scaffold54    I 698 C 0

a score=-4374.000000
s ce10.chrX               769801 7 + 17718866 GGTGTTC-
s caeRem4.Crem_Contig24   534093 7 -  1162296 CTTGTTA-
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3532335 1 - 33334924 C-------
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_62        69886 7 +   783054 CATGAAG-
i caePb3.Scfld02_62     I 3 C 0
s caeJap4.Scaffold54      226110 7 +   258924 -GAGTTTC
i caeJap4.Scaffold54    C 0 I 39
e cb4.chrX              21212159 123 - 21540570 I

a score=-11503.000000
s ce10.chrX               769808 94 + 17718866 GTTATTGGAGTTCGATCCTTGTTTGAAGTGAAAATTCTTGGAAGCTTGGAAGCAAGCGTTGATTAAAAAAA----------ACTTAAATTTTGCCCGTTTAAAA--
s caeRem4.Crem_Contig24   534100 48 -  1162296 TCGAATAGAG-------CTGACTCCTAGAAAA--------------------------TACTATAGCAGAA----------ACct---------------caaagt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3532336 38 - 33334924 -------GA---------TAGTGCCAAAACAA-------------------------------Taggaaaa----------acct---------tttttccgaC--
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_62        69893 78 +   783054 TTTTctaaa---------ttgttcaaaaaaaaaa-------aaggttggaaATGGGC-TCCGTTTGGAGAAGGACTAtcctattt---------ttgtttcaaa--
i caePb3.Scfld02_62     C 0 I 835
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I

a score=-5570.000000
s ce10.chrX               769902 134 + 17718866 AACTGAAACAAAAAAAATTTGTTTGATGACATAACAATTTTAAATGATAAGAACCCAGTTGCAAAGACATATCTTTCCTAAA---TTTCATCTTACTTTTCAAGTG-TCAACTGGCCCTTTTCACTGGCCGCAAAACT
s caeRem4.Crem_Contig24   534148 101 -  1162296 --------caaaaacaat-------ATGAAATAGTGTTTCTGAG-----------AAATCTgagagaaaaacttttcctGAAGTTCCTCATCTAGCCTTTAGAATTGTTG-----------TCGTAGCCTACAAAACT
i caeRem4.Crem_Contig24 C 0 I 115
s caeSp111.Scaffold629   3532375  63 - 33334924 ------------------------------------TTTCT-------------------TTGGCTaaaaactgttcaaaatgacttttat------tccaaaatt-tcg-------------gCAATGCGCATAATT
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117  39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I

a score=-3003.000000
s ce10.chrX               770036 139 + 17718866 CAAAAGCTATACTAAAGGGTAGCAATGTGGCGCGTAAACAAAGCCTTGGTGTTTGGACCAAATTTCGGCGCCTGCATGAATGCCGCTAGAAAGCGTGTAAACCCGGCACATGTCGGACGGTGCCCCTTTGCCATGGTTT
s caeSp111.Scaffold629   3532438  30 - 33334924 TAAGATCGGaac----------------------tcaacaaaa----------------aaatttcgg-----------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117  39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I
e caeRem4.Crem_Contig24   534249 115 -  1162296 I

a score=-1352.000000
s ce10.chrX               770175 28 + 17718866 GATTCAATAGTTTAATA-----------------------GTTCATGATTC-
s caeRem4.Crem_Contig24   534364 52 -  1162296 AATTCAGTAATTGGAAATGAATAGTTAGAAAACGTAATGCACATGCCAGTTG
i caeRem4.Crem_Contig24 I 115 C 0
s caeSp111.Scaffold629   3532468 25 - 33334924 ---tcaaaaattcaaaa-----------------------attttcgattc-
i caeSp111.Scaffold629  C 0 I 55
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I

a score=434.000000
s ce10.chrX               770203 28 + 17718866 AATA----------GGCAAACTTACACTAGTAAAAATT
s caeRem4.Crem_Contig24   534416 38 -  1162296 AATATAGAATGTGGGGGAGATTTACATGAGGAAATGCT
i caeRem4.Crem_Contig24 C 0 I 15
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I
e caeSp111.Scaffold629   3532493 55 - 33334924 I

a score=0.000000
s ce10.chrX               770231 10 + 17718866 ACTAACTTGG
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I
e caeSp111.Scaffold629   3532493 55 - 33334924 I
e caeRem4.Crem_Contig24   534454 15 -  1162296 I

a score=449.000000
s ce10.chrX               770241 27 + 17718866 TAACATATAATTATCAT-TTTTGTTACC
s caeRem4.Crem_Contig24   534469 28 -  1162296 TCACAGATATTTCCCACGTTTTGCAAAC
i caeRem4.Crem_Contig24 I 15 C 0
e caePb3.Scfld02_62        69971 835 +   783054 I
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I
e caeSp111.Scaffold629   3532493 55 - 33334924 I

a score=-1761.000000
s ce10.chrX               770268 18 + 17718866 TTATATC------------------AACAATATGAA------
s caeRem4.Crem_Contig24   534497 42 -  1162296 TCATGACTACGGATccgatgaaactgaaaataacaatattGA
i caeRem4.Crem_Contig24 C 0 I 33
s caePb3.Scfld02_62        70806 17 +   783054 TTGTAGC-------------------AAAACAATAA------
i caePb3.Scfld02_62     I 835 C 0
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I
e caeSp111.Scaffold629   3532493 55 - 33334924 I

a score=180.000000
s ce10.chrX               770286 1 + 17718866 T
s caeRem4.Crem_Contig24   534572 1 -  1162296 t
i caeRem4.Crem_Contig24 I 33 C 0
s caeSp111.Scaffold629   3532548 1 - 33334924 c
i caeSp111.Scaffold629  I 55 C 0
s caePb3.Scfld02_62        70823 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      226117 39 +   258924 I
e cb4.chrX              21212159 123 - 21540570 I

a score=910.000000
s ce10.chrX               770287 1 + 17718866 A
s cb4.chrX              21212282 1 - 21540570 A
i cb4.chrX              I 123 C 0
s caeRem4.Crem_Contig24   534573 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3532549 1 - 33334924 a
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        70824 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      226117 39 +   258924 I

a score=95661.000000
s ce10.chrX               770288 618 + 17718866  
s cb4.chrX              21212283 600 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   534574 630 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3532550 620 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        70825 577 +   783054  
i caePb3.Scfld02_62     C 0 I 52
s caeJap4.Scaffold54      226156 494 +   258924  
i caeJap4.Scaffold54    I 39 C 0

a score=-13268.000000
s ce10.chrX               770906 63 + 17718866 TAATATCACAATAGGAA----TTGTTAAAGTTTTAAATTGGTATGCTTCAGGAGGC---AAGACCGAGCA
s cb4.chrX              21212883 54 - 21540570 ------TAAGTTTCGAATTCGCcataaaaac----gttt------ttttaggACTCTTCTCGGAAAAGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   535204 52 -  1162296 ------TACCCAGCGTGTACCGCGTTAAATCACCAATTA------TTTCAGGA------TCGCCCCAGTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3533170 48 - 33334924 -----------TGCGTA-ATGATGTGAAAAA-TTAGACT------TCTTAGGACTC---CAAGCCAAGCC
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      226650 54 +   258924 ---TATcatggtaaaaa----attttaaaactttattga------ATTCAGGATGC---AGCGCCTTCTA
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        71402 52 +   783054 I

a score=-8916.000000
s ce10.chrX               770969 65 + 17718866 GAATCTTCAAGGAGAGAGTTCGCAGCCAA------CAAGCA-TTGACTACTACTCCATCTTC---------------------AGAAGAGCAC
s cb4.chrX              21212937 74 - 21540570 GATTGTTCGAGGAGCGAATCCGTACGCA-------GGATCGTACCACCGCAGCACCAGCTACC------GTAGACCA------TCCGGAACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   535256 65 -  1162296 GTCTGCACAGAGAGAGAGTTCGCTCTCAATCTTCTGGATCA-ACAACTGAAGCTCCAG---------------------------AAGAACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3533218 74 - 33334924 GTATTTTCAAAGAGCGAGTACGCACCCAA------GAAACA-ACTTCAACTGCTTATGCTAAC------GATAGCCA------CGAAGAGCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        71454 86 +   783054 GGATGTTCAGAGAGAATTCTCGCTCGCCG------CAAGAG-ACTACAACTGCAACTCCTAGCCGTTCTGATGGTGAGGAAGTAGAAGAGCAT
i caePb3.Scfld02_62     I 52 I 27
s caeJap4.Scaffold54      226704 53 +   258924 GAATATTCAAAGAACGAACCAGAGGTCAG------CAGAAT-ACTATCTCAA-------------------------------AAACGAAC--
i caeJap4.Scaffold54    C 0 C 0

a score=-4886.000000
s ce10.chrX               771034 30 + 17718866 GAGGAT---CATGAAAGTCATGAAATGCCTGAT------
s cb4.chrX              21213011 27 - 21540570 ---CCT---GAAGAAGGTCATTATGagccagaa------
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig24   535321 27 -  1162296 ---CAT---GAGGAACATCATGAAGAAGTGGAG------
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold629   3533292 30 - 33334924 ---CATTTGGAAGATGATCACCATGAACAGCAA------
i caeSp111.Scaffold629  C 0 I 3
s caeJap4.Scaffold54      226757 24 +   258924 ------------GAAAGTTCT---GAACGAGAATCACCT
i caeJap4.Scaffold54    C 0 C 0
e caePb3.Scfld02_62        71540 27 +   783054 I

a score=41587.000000
s ce10.chrX               771064 79 + 17718866 ATGCCTGTTA---AGAAGGACGAAGTGATGGGAAGCATGGATACGTTGTCGTCGCTTGCAAAAGTTCAAAGAGATCAAGGTA
s cb4.chrX              21213062 82 - 21540570 TCACCGAAGACATTGGATAGCGGAGTGATTGGCAGCATGGACACATTGAAATCGCTCGCTAGGGTTCAACGGGATCAAGGTA
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig24   535349 78 -  1162296 ----TGAACAAGTCGACTGACAAAGTTATGGGAAGCATGGATACCTTGTCTGCTCTTGCAAGAGTTCAACGCGATCAGGGTA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold629   3533325 79 - 33334924 ATTCCAAAGA---GAAGAGACAATGTGATGGGAAGCATGGACACTATGGAATCTCTTGCTAGAGTTCAAAGAGATCAAGGTA
i caeSp111.Scaffold629  I 3 I 67
s caePb3.Scfld02_62        71567 79 +   783054 ACTCCAAAAA---CGAATAGTGAAGTATTGGGAAGCATGGACACCTTGGTATCACTTgcaaaagttcaaagagaTCAGGGTG
i caePb3.Scfld02_62     I 27 I 7
s caeJap4.Scaffold54      226781 58 +   258924 ------------------------GTAATGGGAAGTGTTGAAACGTTGGCTTCCCTAGCAAGAGTGCAAAAAGATCAAGGtt
i caeJap4.Scaffold54    C 0 C 0

a score=-13812.000000
s ce10.chrX               771143 55 + 17718866 CACATTTTGACGAGAATTTGTTTTTGAGCAGAAAACTGTGAAATATAT-TTTAGCA
s cb4.chrX              21213144 38 - 21540570 --------------AAATTTctta--aaca-aaaatattaaacTACAT-TCCAGCA
i cb4.chrX              C 0 I 54
s caeRem4.Crem_Contig24   535427 10 -  1162296 --------------AGATTCTTGG--------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        71653 25 +   783054 CATAGCTC----AGAGCTTGTTGC-----------TGTCA----------------
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold54      226839 37 +   258924 tattaatt------aatttttttt-------------ttgaaacgcatatttagta
i caeJap4.Scaffold54    C 0 C 0
e caeSp111.Scaffold629   3533404 67 - 33334924 I

a score=273.000000
s ce10.chrX               771198 3 + 17718866 AAA
s caeJap4.Scaffold54      226876 3 +   258924 aaa
i caeJap4.Scaffold54    C 0 I 4
e caePb3.Scfld02_62        71678 0 +   783054 C
e cb4.chrX              21213182 54 - 21540570 I
e caeSp111.Scaffold629   3533404 67 - 33334924 I
e caeRem4.Crem_Contig24   535437 0 -  1162296 C

a score=-21188.000000
s ce10.chrX               771201 442 + 17718866 TTAATAGTTGTTTGACGTATTCAGTTGCATACATTTTTGTAGAAAACAGATAACAATTGTAAAACTTTT-----CGAAGAA-GTTCCTCAAACTAGCAAATATTTTTAA------TTGTCTAGAATGAAAAAATTAATTCCAGAATGTTTCAAAACGTTTCAACAAATTCTAGAAAAATCAAACATT--TATTTTGAAATGTTTTAAAAGCGCCTAGAAATTGTTTAATACGTCTGAAACTTTTGTGAGCTCAAGAAGTTGTTGATGTGTTTCAAAAGCTTCTAAAACTATTAAAAGTATATCTAATACAAAATTTAAAAATAAAGTTCTAAAGTCTTTTTAGAGCTAGGACAAATC--CATTCGCTGTTTTTAAAGTTCCAAGAGCTTTAGAATAACAAAA----AAGCTCTCTATAATATTCTAGAAGTATCTATGATTCTAAA----TATCAA-------------ATATGTCAAA
s caeRem4.Crem_Contig24   535437 343 -  1162296 ------------------------------acatttttagataaaaa------taattgaaaa-----------cgaaaaatgcgTCGTTGTGGCGGCGATATTAGTaa------ttttcttgtatt-----------tttagCTAGTTT-----TGCTCAAACTTCTTCtag---ttttgattattttcattagCACATGTCCGTGGGGCGATTGAAAACCGT----GACGTCTCAGAC------AAGCTTTGAGAGTAGT---------------------AACGCATTAAAGATTAAAACTGG---GTAGTTTGAAGCtgctatttt---tttgaataacggCCaaaaaaaGAC--TTTTCACAATTTGCAAC--------ACCTGCTGGATGACATAACGGTTAGTTCCCTGGAA----TTAGGgctgt-tttgaaatgaaa----tttaaaaggAT--------TTATTTAAAG
i caeRem4.Crem_Contig24 C 0 I 4
s caePb3.Scfld02_62        71678 299 +   783054 -------------------------------------------AAAC------Taattcattgagtttttttttcgaataaagttttg------aggtactctttttgaagaacttcttCTGACATG-----------TGCAGC-------------CTGAAAC-------------------------CAGTAAGAAATTCT-------TGATAGA-----GT----GAC----------------AGTTTTGGGGCGAAT------------------TCGAACGAAATCATTATCCCATAtag---caaatttcaaaataatatttttgatctgCACTTCGAACAAGGAAATACAACATCCGCAATATTCAAC------------------TAAGATTATTTTGAGACACAtcgaa----ctaaaaaaat-tattgtttgaaACAGCTCCAAACTGGTGCTAATAGTTATTTTAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      226879   4 +   258924 I
e cb4.chrX              21213182  54 - 21540570 I
e caeSp111.Scaffold629   3533404  67 - 33334924 I

a score=-2822.000000
s ce10.chrX               771643 20 + 17718866 TTCAAACAAGGCTAACCAT----C
s cb4.chrX              21213236  7 - 21540570 TTCAAA-----------------C
i cb4.chrX              I 54 C 0
s caeRem4.Crem_Contig24   535784 24 -  1162296 TGCAAAATAAGCTGTATATGttcc
i caeRem4.Crem_Contig24 I 4 C 0
s caePb3.Scfld02_62        71977  3 +   783054 ---------------------ATC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      226879  4 +   258924 I
e caeSp111.Scaffold629   3533404 67 - 33334924 I

a score=2015.000000
s ce10.chrX               771663 4 + 17718866 AATA
s cb4.chrX              21213243 4 - 21540570 AATG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   535808 4 -  1162296 aatc
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62        71980 4 +   783054 AATA
i caePb3.Scfld02_62     C 0 I 9
s caeJap4.Scaffold54      226883 4 +   258924 aatt
i caeJap4.Scaffold54    I 4 C 0
e caeSp111.Scaffold629   3533404 67 - 33334924 I

a score=115920.000000
s ce10.chrX               771667 157 + 17718866 TTT--CAGCCGAGACATTCCGCATGTGGTCAACTCAGTTCCGTACTTTCAAATCCAGCGTTATGAAGTACATGGAACAATCCAGCGATTTGCTTCAAAAACACGAGAAAAAGATCCAAACTCTTCAGAGAGTTGCCAGTAAACTCCACGAAGATATTAA
s cb4.chrX              21213250 159 - 21540570 TTTTACAGCTGAAACCTTCCGTTTGTGGGCTTCTCAATTCCAAGTGTTCAAAACCGACGTTATGGCATTCATGGAGCAGACGAGCAATGTTTTGCAGAAGAACGATAAAAAGATCAAAACACTGCAAAGAGTCGTCAGAAAGATCGCTACGGATATTGA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   535815 157 -  1162296 ttt--cagctgaaaccTTCCGTCTCTGGGCTTCTCAATTCGAAGTCTTCAAGAACAACGTGATGAAGTTCATGGAACAGACCACCGACGTCCTCCAGAAGCAAGACAAGAAGATCAAGACCCTGCAAAGAGTTGTTCGCAAAATTGCCAGCGACATTGA
i caeRem4.Crem_Contig24 I 3 I 865
s caeSp111.Scaffold629   3533471 157 - 33334924 TTT--CAGCCGAAACATTCCGTCTCTGGGCCTCGCAATTCCaaaccttcaaaaacaacGTGATGAAGTTCATGGAGCAATCCAGCGATGTCTTGCAAAAACATGAGAAGAAGATTACGACTCTTCAAAGATTGGcaagaaaaattgtcaaagaaaacga
i caeSp111.Scaffold629  I 67 C 0
s caePb3.Scfld02_62        71993 157 +   783054 TTT--CAGCTGAAACCTTCCGCATGTGGGCTGCTCAATTCCAAACTTTCAAGAACAACGTCATGAAGTTTATGGACCAAACCAGCGACGTTTTgcagaagaatgaaaagaaaatcacaACCCTTCAGAGAGTGGTTCGAAAGATTGCCAGTGATATGGA
i caePb3.Scfld02_62     I 9 C 0
s caeJap4.Scaffold54      226887 157 +   258924 ttt--cagccGAAACTTTCCACTTGTGGTCAAATCAATTCCAAGCTTTCAAGAATAACGTTATAAAGTTTATGGACCAGACCAGCGATGTGCTTCAGAAAAATGACAAGAGAATTAAAACTTTACAACGTGTTGTAAGAAAAATTGATCATGATATTGA
i caeJap4.Scaffold54    C 0 C 0

a score=637.000000
s ce10.chrX               771824 5 + 17718866 TCATT
s cb4.chrX              21213409 5 - 21540570 CGAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3533628 5 - 33334924 taact
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72150 5 +   783054 CGAAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      227044 5 +   258924 TGGTT
i caeJap4.Scaffold54    C 0 I 1812
e caeRem4.Crem_Contig24   535972 865 -  1162296 I

a score=247.000000
s ce10.chrX               771829 2 + 17718866 GA
s cb4.chrX              21213414 2 - 21540570 GA
i cb4.chrX              C 0 I 147
s caeSp111.Scaffold629   3533633 2 - 33334924 ag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72155 2 +   783054 AA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   535972 865 -  1162296 I

a score=-575.000000
s ce10.chrX               771831 23 + 17718866 TTT-----GACTCTGTTTTGCTTTTTTT
s caeSp111.Scaffold629   3533635 16 - 33334924 ctt------------tttcacttttttt
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_62        72157 27 +   783054 TTGTTGTCATTTCAATTTCCCTTATTT-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213416 147 - 21540570 I
e caeRem4.Crem_Contig24   535972 865 -  1162296 I

a score=151.000000
s ce10.chrX               771854 3 + 17718866 TCA
s caePb3.Scfld02_62        72184 3 +   783054 TTA
i caePb3.Scfld02_62     C 0 I 135
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213416 147 - 21540570 I
e caeSp111.Scaffold629   3533651 15 - 33334924 I
e caeRem4.Crem_Contig24   535972 865 -  1162296 I

a score=0.000000
s ce10.chrX               771857 252 + 17718866 TAATAAAATACACATAAAACGAATATTAAAACTTGATTGTTTGTTCTAGAAGATGTTATATTTTATAGAACGGCTACCGAAGAGGttataaaaatttttaaaatttCAGAAATCTGCAGCAACTTTGTAGAAGTTGCAGCGTTTATATTTGTAGAATGAATTAAAAATTATATTTCAAGAAACACAAGATTTTAAAACTTTAATTTTCAAACTTTTATGAATTTTCACGTGAACTTCAAAAGCTGCCAATTT
e caePb3.Scfld02_62        72187 135 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213416 147 - 21540570 I
e caeSp111.Scaffold629   3533651  15 - 33334924 I
e caeRem4.Crem_Contig24   535972 865 -  1162296 I

a score=480.000000
s ce10.chrX               772109 87 + 17718866 ATAAATAGTTTTTTCATGTTATTTCTGTTTTGACATTTCATATTTCAAAGCAGTTTGCAAGAACAAGTGCATTGTTATTATAGTTCC
s caeRem4.Crem_Contig24   536837 73 -  1162296 ATAATTAccttttttatatttcgaCTGTTATGTCA----------CAAAA----TTGATAGAAGAAACTgtcctttcttctttttct
i caeRem4.Crem_Contig24 I 865 C 0
e caePb3.Scfld02_62        72187 135 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213416 147 - 21540570 I
e caeSp111.Scaffold629   3533651 15 - 33334924 I

a score=-928.000000
s ce10.chrX               772196 42 + 17718866 ----TTTTTATTTTTAGTCTCCCAATCTTTGCCC--TTTT-CCA----------AAAAT----
s caeRem4.Crem_Contig24   536910 47 -  1162296 gattttttcatta----tctcaaaaacaatgtCC--TTTCGTCA----------AACAGACat
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold629   3533666 51 - 33334924 ----tttttatct----tcaataaaacgttttccggttttGTCAtccttttctgaaaag----
i caeSp111.Scaffold629  I 15 C 0
e caePb3.Scfld02_62        72187 135 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213416 147 - 21540570 I

a score=331.000000
s ce10.chrX               772238 52 + 17718866 ----------AAAAAGAAGA---ACTTTCTATCAATTTTCACATTT-------TT---CCGCCCTTC----CAGCAGGA
s cb4.chrX              21213563 53 - 21540570 ----------AAGgatgaga---aatatttttcttttttcacattt-------tt------ctcctCAAAACAATCGAA
i cb4.chrX              I 147 C 0
s caeRem4.Crem_Contig24   536960 51 -  1162296 ----------aaaattgaaa---aatatctctgatgattcacattt-------tt----cccTCTTC----CAACAGGA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold629   3533717 75 - 33334924 aattgaaaaaaagtttgaaaacgaaTGTCCTTTGTGTCTgacaaacaagaaaattgaaaaatgcctC----CATCAAGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        72187 135 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=9179.000000
s ce10.chrX               772290 150 + 17718866 -GGAGGCTG-TCTGATCG--GCTG-TTCGAT-TAG---GCCT-------TAGT-GAAGGCACTTATCTAGATTGGCCCATATTT-CTAGTGT--CCTCCTGTTTGGC-------------------------ATTGCGAACCGTCCATTTCTTCG--T------CCAATTCGC--------TGCAAGGTCACACTGTCCTCTTCCTCT---CTT----------
s cb4.chrX              21213616 185 - 21540570 GACA--TTC-TTCGATCC--ACGA-CTCGAT-AAGA----------------T-GAAGGCACTTATCTAGATTGGCCCGCATTTGCTGGTGTCCTCTTCGATTTGCCTGTTGACGACATCGCctaaaagaaaaataagaaccGTCCATATCGTCT--T-----GCCTATCCGCACAACACAGACAAGGTCACACAG--------TTTTCCACCCGCTAGCACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   537011 174 -  1162296 GGCACTTTG-TCCGATCCGAAAGA-GTCGAT-AAGAAAGCCTAGGAGAAGAGT-GAAGGCACTTATCTAGATTGGCCTGTATTTTCTGTTGT-GTCCTCGATTTGCCTGTTGACGACGAC-------------------ATCGTCCATTTCTTCTCCC-----GACTGCCCACTC------GGCAAGGTCACTCGG--------TTTT---CCCGTT----CTT
i caeRem4.Crem_Contig24 C 0 I 140
s caeSp111.Scaffold629   3533792 145 - 33334924 ------CGCTTTCGATCC--GCCGCCTCGATAAAGTGTGGCT------ATAGTAGAAGGCACTTATCTAGATTGGCCCATATTT-CTGCTAT-GTCCTCAATTTGCC----GAAG-----------------AAGAA--------C-CGTCTTCT--T-----GACTGCCCACACAACACAAGCGAGGTCA--------------TTT---CCAA---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72322 166 +   783054 -GGAGGCAC-TTAGATTC--AATA-TTCGAT-AAGTTTGCCT-------CAGT-GAAGGCACTTATCTAGATTGGCCGGCATTT-CTG--GT-GTCCTCGATTTGCC----gaagacaac---------aaaaagaataatcGTCC-CTTCTTCT--TCGGTCGTCTGCCTACACAAAACAGGCAAGGTCAT------------CTTT---TCTG---------
i caePb3.Scfld02_62     I 135 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-1070.000000
s ce10.chrX               772440 81 + 17718866 ---TCATCCACCACCAT----CAAACAATTCATCCTACT---CGTTTGTTGGCAGC--------CGGGACTTGAAGA--AAA---AGATGGG---AGAACAGTGAGT
s cb4.chrX              21213801 90 - 21540570 ---GCTACCGTCCTCAC----CAGACCTCTCCTCGTCTC---GTTCTTATTGCATC----GAACTAGCAACTGGCAGCTAGAAACAAATGGC---GGACCAGTAAGT
i cb4.chrX              C 0 I 62
s caeSp111.Scaffold629   3533937 93 - 33334924 TTGTTCGTCTTCCTCACACAGTTTGTCGCTCGTTCTTCCCGCATTCTTCTTGCAAC-----------TGGTTGAAGGCTAAA---GGATGGCAGAAGACCAGTAAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72488 95 +   783054 TTGTGTTCTTTCTTCAT----TCCTTCTCTCGACATCCCGAAGATATTTTCGCGCCATCTCAAGTTGTGATTGTCAG--AGA---AAATGGC---agatcagtgagt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=-558.000000
s ce10.chrX               772521 2 + 17718866 TT-
s caeSp111.Scaffold629   3534030 3 - 33334924 TCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72583 2 +   783054 tt-
i caePb3.Scfld02_62     C 0 I 71
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213891 62 - 21540570 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=863.000000
s ce10.chrX               772523 23 + 17718866 ATCGATTTTTATTTCTAAAATAG
s caeSp111.Scaffold629   3534033 21 - 33334924 ATCGa--ttgatttcgaaattag
i caeSp111.Scaffold629  C 0 I 51
e caePb3.Scfld02_62        72585 71 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213891 62 - 21540570 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=0.000000
s ce10.chrX               772546 616 + 17718866  
e caePb3.Scfld02_62        72585  71 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213891  62 - 21540570 I
e caeSp111.Scaffold629   3534054  51 - 33334924 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=397.000000
s ce10.chrX               773162 119 + 17718866 AAAACGATTTATCGATAAAGTGCTTACATTTTGAAAAAATTGCAAAACAATCAGACACTGAACATTGTCAAATAAGGATGTCTTTTACAAAATACTTTAAAATTTTTCCT--------CAAAAT---ACT
s caePb3.Scfld02_62        72656 114 +   783054 aaaccaattcATT--TGAAGTTATGACATTATGATGAACT--CATAACAATTc--cactg------ttcaaaaaaacgtATAACTAActgagaacttt----tttcttctaaactAGTCAAAATCGGAGT
i caePb3.Scfld02_62     I 71 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21213891  62 - 21540570 I
e caeSp111.Scaffold629   3534054  51 - 33334924 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=679.000000
s ce10.chrX               773281 9 + 17718866 AATACAAAT
s cb4.chrX              21213953 9 - 21540570 AACATACAT
i cb4.chrX              I 62 I 3
s caePb3.Scfld02_62        72770 9 +   783054 AACCCGAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeSp111.Scaffold629   3534054 51 - 33334924 I
e caeRem4.Crem_Contig24   537185 140 -  1162296 I

a score=-1458.000000
s ce10.chrX               773290 8 + 17718866 TTTCAGTA-
s cb4.chrX              21213965 8 - 21540570 -TTATAGAC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   537325 8 -  1162296 -TTTCAGAC
i caeRem4.Crem_Contig24 I 140 C 0
s caePb3.Scfld02_62        72779 8 +   783054 TTTGCTTA-
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeSp111.Scaffold629   3534054 51 - 33334924 I

a score=34371.000000
s ce10.chrX               773298 74 + 17718866 AAAACTGCAAATGCAATCGTTGGGTGATCAGTTTGCAAGCCGCATTCGACAGAGATGATGTGAGT---TCATAAATC
s cb4.chrX              21213973 75 - 21540570 CGAAATGCAAATGCAACCGATGGGTTATTAGTCTTCAAGCAGCATTTGAAAGAGACGATGTGAGTATCTTTgaga--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   537333 73 -  1162296 CAAACTGCAAATGTAACCGATGGGTGATCAGTCTTCAAGCCGCATTTGAAAGAGATGAC----GTATGTTTTAAATC
i caeRem4.Crem_Contig24 C 0 I 334
s caeSp111.Scaffold629   3534105 65 - 33334924 AAAAATGCAAATGCAACCGATGGGTTATCAGTCTACAAGCTGCTTTCGAAAGAGACGATGTAAGC------------
i caeSp111.Scaffold629  I 51 C 0
s caePb3.Scfld02_62        72792 65 +   783054 CGAAGTGTAAGTGTAACCGGTGGGTCATCAGTCTACAAGCAGCATTTGAGAGAAACGATGtgagc------------
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-3372.000000
s ce10.chrX               773372 21 + 17718866 GTAAATTTCCT---AAATGGATTG---
s cb4.chrX              21214048 15 - 21540570 ------tc------aaacttttttttc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3534170 14 - 33334924 ----TTTC------AGATATATTG---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72857 20 +   783054 ----attttctgaaaaaaatcttg---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   537406 334 -  1162296 I

a score=141184.000000
s ce10.chrX               773393 253 + 17718866 AAAAC-------TAATT---TTAGTTCGAAAAACTGTTCCGGAAAGCTGTGCAAAGCATAACTGAGGAGGAATTCCAACGAATCCCAGAGTTCAGACATCGCGAAGATGCTCTTGCTTGTCTTTTCGGAAGACTTTTGCTTCGTCACTCTGCTCAGAAGTTTAGTGGAGAACCATGGAATACCATCCGGTTTGAGAGAACTGAGAGAGGAAAACCGTTTTTGGCAGTTCCAGCAGACACTACTTTTGGGCTGAACGTTTCTCA
s cb4.chrX              21214063 257 - 21540570 gaaac---ttcccATTT---ACAGTTTGAGAAACTCTTCCGTAAAGCGGTGCAAAGTATCACTGAAgaggaatttcaaagaatcccGGAATTTCGTCATCGTGAAGACGCGTTGGCCTGCCTTTTcggtcgtcttcttctccgacACTCGGCTCAAAAGTTCAGTGGGGAACCATGGCCAACTATCAAATTTGAGAGAACTGAACGTGGAAAGCCATTCTTAGCAGTTCCGGCAGACACCAAGTTCGGATTGAATGTATCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   537740 251 -  1162296 aaaac---------ttt---tcagttcgaaaaacTATTCCGGAAGGGAGTGCAAAGTATCACAGAAGAAGAATTCAAGAGAATCCCCGAGTTCCGTCATCGTGAGGACGCACTTGCCtgtctttttggaaaacttcttCTCCGTCACTCCgctcaaaaattcagtggGGAGCCATGGAAGAACATCAAGTTTGAGAGAACCGAACGCGGAAAACCATACTTGGCTACTCCAGCGGACACCAAGTTTGGACTAAATATCTCACA
i caeRem4.Crem_Contig24 I 334 C 0
s caeSp111.Scaffold629   3534184 263 - 33334924 ATAacataattttattcatatcagttcgaaaaacttttccgTAAAGCTGTCCAATGTATAACCGAAgaggaattcaaaaaaattccggagCTCCGTTACCGAGAGGATGGTCTGGCATGCCTTTTCGGTCGCCTCCTTCTCCGCCACTCCGCTCAAAAATTCAGCGGAGAGCAATGGAAACTGATCAAATTTGAGAGAACAGAACGTGGAAAACCGTTTTTGGCCATCCCAGCAGACACGAAATTTGGTCTCAATGTTTCCCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        72877 260 +   783054 aacacatttatatattt---tcagtttgaaaaactgtttcgtAAAGCGGTGCAAAGTATAACCGAggaagaatttcaaagaatccCAGAGTTTCGTCATCGCGAAGACGCATTGGCTTGTCTCTTCGGACGTCTTCTCCTTCGTCATTCTGCCCAAAAGTTTAGTGGTGAACCATggcaaaatatcaaatttgagAGAACTGAACGGGGAAAACCGTTTTTAGCTGTTCCGGAGAACACGAAGTTTGGGTTGAATGTTTCTCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=3292.000000
s ce10.chrX               773646 8 + 17718866 TCAAGTGA
s cb4.chrX              21214320 8 - 21540570 TCAGGTGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3534447 8 - 33334924 TCAGGTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        73137 8 +   783054 TCAAGTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   537991 0 -  1162296 C

a score=38.000000
s ce10.chrX               773654 1 + 17718866 G
s cb4.chrX              21214328 1 - 21540570 G
i cb4.chrX              C 0 I 34
s caeSp111.Scaffold629   3534455 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73145 0 +   783054 C
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   537991 0 -  1162296 C

a score=182.000000
s ce10.chrX               773655 2 + 17718866 TT
s caeSp111.Scaffold629   3534456 2 - 33334924 TT
i caeSp111.Scaffold629  C 0 I 28
e caePb3.Scfld02_62        73145 0 +   783054 C
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21214329 34 - 21540570 I
e caeRem4.Crem_Contig24   537991 0 -  1162296 C

a score=0.000000
s ce10.chrX               773657 343 + 17718866 TTCTAGGTCTGCAAGGCTAGTTAAGCTTAAAGGGTGTTTAACTGtaaaatttaaagatttattttttaaaattCTTGAATGCTTTTGGGGAATTCGCGAGAAATGTCACCCTCCTAGAAACCATTGGCTAATCAAAACTATCCCAAATTACCTACACTTATATACTAAGGTTAATAACAAAAAAAAAACGGTCATAtattaagtaaccatgagtttatgagaatgcctactttgtggcgcgaaagtagtggcatcagagagaacatgcggcgaagagagatttaggtgccttcgctacgagatattcccgcgccaaaacggtaggcattctcattatctcatg
e caePb3.Scfld02_62        73145   0 +   783054 C
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21214329  34 - 21540570 I
e caeSp111.Scaffold629   3534458  28 - 33334924 I
e caeRem4.Crem_Contig24   537991   0 -  1162296 C

a score=353.000000
s ce10.chrX               774000 27 + 17718866 gtttct---taataAGTTTGCGATATGAAA
s caePb3.Scfld02_62        73145 28 +   783054 GTTTCTAACTATtgaattagtgaaa--aaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21214329 34 - 21540570 I
e caeSp111.Scaffold629   3534458 28 - 33334924 I
e caeRem4.Crem_Contig24   537991  0 -  1162296 C

a score=118.000000
s ce10.chrX               774027 2 + 17718866 TT
s caeSp111.Scaffold629   3534486 2 - 33334924 TT
i caeSp111.Scaffold629  I 28 C 0
s caePb3.Scfld02_62        73173 2 +   783054 ta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21214329 34 - 21540570 I
e caeRem4.Crem_Contig24   537991 0 -  1162296 C

a score=593.000000
s ce10.chrX               774029 4 + 17718866 TGTT
s cb4.chrX              21214363 4 - 21540570 TATT
i cb4.chrX              I 34 C 0
s caeSp111.Scaffold629   3534488 4 - 33334924 TTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        73175 4 +   783054 cGTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I
e caeRem4.Crem_Contig24   537991 0 -  1162296 C

a score=197033.000000
s ce10.chrX               774033 375 + 17718866 TCAGGGAGATTACGTTGCTTTCGCCAGCAGTTGCTCTTCCAAAGTTGGAGTTGATGTCATGAGATTGGATAATGAAAGTGAGTGATATTTC---------CATTTTTAAATAGTTTTAAAACCCTGCAATACCTATATAAATGCTGTTAAAATTTAGGAAACAACAAAACCGCCGACGAATACATCAACTCGATGGCCAAATCTGCATCTCCTGAAGAGCTCCGAATGATGCGCTCGCAGCCAACCGAAGCCATGAAAATGACAATGTTCTACCGCTATTGGTGCCTCAAGGAAGCTATTCTCAAAGCCACCGGTGTTGGAATCATGAAGGATTTGAATAGTTTGGACTTCCGTGTGAACCTTCAAGATCGCTATCGCCCAGGT
s cb4.chrX              21214367 353 - 21540570 CCAGGGCGATTATGTGGCATTTGCAAGTAGCTGCAGTTCGAAAGTTGGGGTTGATGTGATGAGATTGGATACTGAGAGTGAG-------------------AATTTAGACcag----gaaatttttca--------gaaaatattttttcaattcaggaAACAACAAAACTGCTGACGAGTATATCAACTCTATGGCCAAATCCGCGTCACCTGAAGAGCTCCGTATGATGCGTTCTCAACCAACTGAAGCCATGAAAATGACTATGTTCTATCGTTATTGGTGTCTCAAAGAAGCAATCCTGAAAGCAACTGGAGTCGGTATCATGAAAGATCTCAACAGTTTGGACTTCCGTGTGAATCTTCAAGATCGCTATCGTCCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   537991 350 -  1162296 TCAGGGAGACTATGTCGCTTTCGCTAGCAGCTGTACTCCGAATGTAGGGGTGGATGTCATGAGATTAGACACTGAACGTTAGT------TTACAg-----tattttcaaccaa----aaaa-----ca--------gtcaa------tttATTTCAGGAAACAATAAAACAGCTGATGAATACATCAACTCCATGGCCAAGTCTGCATCTCTTGAAGAGCTTCGCATGATGCGCTCCCAGCCAACCGAGGCCATGAAGATGACCATGTTCTATCGCTATTGGTGCCTCAAAGAAGCGATTCTGAAAGCCACCGGAGTGGGAATCATGAAGGACTTGAACAGTCTGGACTTCCGCGTAAACATGCAAGATCGTTATCGTCCAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3534492 348 - 33334924 TTAGGGCGATTATGTGGCATTTGCTAGTAGCTGTTCATCTAAGGTTGGAGTGGACGTAATGAGATTGGATacagaaagtgagttttat-tcACTTGCATCtgttcttgaaaaa----aaa-------------------------------gtatagGAAACCACAAAACCGCCGACGAATACATTAACTCTATGGCCAAGTCCGCATCTCCTGAAGAGCTTCGTATGATGCGCTCTCAACCAACTGAAGCTATGAAAATGACAATGTTCTACCGTTACTGGTGTCTCAAGGAAGCCATTCTGAAGGCAACTGGGGTCGGAATCGTGGCCGACTTGAATAGTCTGGACTTCCGCGTCAATCTTCAAGATCGTTATCGTCCAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        73179 350 +   783054 TAAGGGTGACTATGTGGCTTTTGCAAGTAGCTGCTCACCACAAGTAGGCGTCGATGTTATGCGATTGGATACtgaaagtaagttttttgtcactt---ttcagttttgatcaa----TAA---------------------------TGTCATTCAGGAAACAACAAGACTGCTGACGAGTACATCAACTCAATGGCCAAGTCGGCATCTCCTGAAGAGCTTCGCATGATGCGTTCTCAACCAACGGAAGCTATGAAAATGACGATGTTCTATCGTTATTGGTGTCTCAAGGAAGCTATTTTGAAAGCTACTGGAGTTGGAATCATGAAAGATTTGAATAGTTTGGACTTCCGTGTTAATCTTCAAGACCGTTATCGCCCAGGT
i caePb3.Scfld02_62     C 0 I 40
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=732.000000
s ce10.chrX               774408 3 + 17718866 ATG
s cb4.chrX              21214720 3 - 21540570 AAG
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24   538341 3 -  1162296 ATG
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3534840 3 - 33334924 AGG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73529 40 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-6453.000000
s ce10.chrX               774411  33 + 17718866 -----------------------CGGCGAAAAGTACGA-----------TTGTAGTCT---------------------GTACTTTCA----------------------------
s caeRem4.Crem_Contig24   538351  36 -  1162296 -----------------TCG---TGGAAAGAGT--GAAAACTGGTTTTATTGTGTTCT----------------------------------------------------------
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3534843 113 - 33334924 CAAAATATGTTTGCGaattgaattggaaaaattcacaaaacctgtt---ttgtattctgaatcaatcaaaaattggagGGAATCTTTAAAATCTACAAATTATCGAGaacaaaata
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73529  40 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I
e cb4.chrX              21214723  39 - 21540570 I

a score=-3225.000000
s ce10.chrX               774444 1 + 17718866 --C
s cb4.chrX              21214762 1 - 21540570 -c-
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig24   538387 1 -  1162296 -G-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3534956 1 - 33334924 a--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73529 40 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=72092.000000
s ce10.chrX               774445 133 + 17718866 TTTTTAGGAGCATTTGTGACTTCGACTACTGTCCTGGAGGATGGAAGACTTCAAGATCAATGGATCTTTGAAGAAACGTTTGTTGATGCGAAGCATTCTGCTGCGGTTTGTAAAGAGGTAGGTTTTGAGAATT
s cb4.chrX              21214763 129 - 21540570 atTGAAGGGGCATTCGTAACTACCACAACTGTCCTTGAAGATGGTCGACTTCAAGACCAATGGATTTTTGAGGAGACGTTCGTGGATGGAAAACACTCAGCCGCTGTTTGCAAGGAAGTGag---taaaaac-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   538388 130 -  1162296 CTTTCAGGTGCATTCGTAACCAGCACGACTGTTTTGGAGGATGGAAGACTCCAGGATCAGTGGATTTTTGAAGAGACTTTTGTGGATGGAAAGCATTCTGCTGCTGTTTGCAAAGACGTTAG---TGAAAATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3534957 130 - 33334924 tattaaGGTGCGTTTGTGACTACCACCACTGTTTTGGAGGATGGAAGACTTCAAGACCAGTGGATCTTTGAAGAAACGTTCGTTGATGGAAAACATTCAGCTGCGGTGTGCAAAGAGGTAAG---GAGGGAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        73569 130 +   783054 TTTACAGGAGCGTTCGTGACTACAACAACTGTCCTGGAAGATGGTAAACTTCAAGATCAATGGATATTTGAAGAAACTTTTGTTGATGGCAAACACTCTGCAGCAGTTTGCAAAGAAGTGAG---TAGTAGCT
i caePb3.Scfld02_62     I 40 I 355
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-24815.000000
s ce10.chrX               774578 144 + 17718866 -----------------------CTGTAAC----GATTTGCAATAAC-------------CCGCTTGCTGCTCAAACCCAAAACACAATTGCGTTTGTTTTGCGGAGAGGAACTTAGTTG----------------TGAGAAGAACGTTTAG--------AAAAAAA-----------GCATTG---TTTG---------------AGCACACTGAACT-------------ACTCTTGCTCTTTGATAG
s cb4.chrX              21214892  96 - 21540570 ----------------------------------tattttcaacaAA-----------------------------------------------------------------------------------------CGGGAAGAAAATCTATAGATacaattgaaaagttttgaacgcACTTTG---TTTG---------------AACACTATTTTTT-----------ATGCTTTTTCCTTCGCGC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   538518 236 -  1162296 TCGTTGATAGAAATATTTGGCAACTGAAAGAATgtgtttttgataaaaacacCGGTGAATCCTAGTGAGATGCAAACTATTTCGACAACAGCG---AGTTTCCGG-------TTTAGTGGTTTcttcagagatttttgagtacaaaatctat---taaaaatgaata-ttccACATACAATTTGGAATTTGACCCTGGCATACGGCAacgaaatttttcagcatCCACAAATACCCTTGATTTCTAgtat
i caeRem4.Crem_Contig24 C 0 I 122
s caeSp111.Scaffold629   3535087  87 - 33334924 --------------------CAGTCA--------CCTATACGGAAAA-----------------------------------------------------------------------------------------TACGTAAAACTTCCGT--------TTGAACG--CCAAATTGCACGTTG---TTTG---------------AAcatcacttttt--------------tgcttGCTTTCTG----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73699 355 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-9407.000000
s ce10.chrX               774722 38 + 17718866 AAAACGATTGA--AAACAGGAGAACGCGGTAGTGTGTTTT------------------
s cb4.chrX              21214988 14 - 21540570 -------------AAGCATCAAAG-----------------------AAG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   538876 55 -  1162296 AAAACGTTTGAAAGAACATCAGAACGC---ACGTTGTTTGAACACacaagttttttct
i caeRem4.Crem_Contig24 I 122 C 0
s caeSp111.Scaffold629   3535174 34 - 33334924 ----TGTCGCTTAGAGAGTCAGAG-----------AACGACATAGacag---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        73699 355 +   783054 I
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=-4138.000000
s ce10.chrX               774760 20 + 17718866 ------------------------------CCACAAAAAAGTG---GTTCGCC
s cb4.chrX              21215002 29 - 21540570 -------------------AAAGCGGACAGCAGGAAAAAAGAA-----CTGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   538931 53 -  1162296 cttcgttttgTCGGGaatcaaagaagaaaacaggaacaaaaaaacggttcGCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535208 13 - 33334924 ------------------------------ctagaaaaaaatg----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        74054 23 +   783054 ------------------------------ccaaagaaaaatgtcTGTTCCCC
i caePb3.Scfld02_62     I 355 C 0
e caeJap4.Scaffold54      227049 1812 +   258924 I

a score=73892.000000
s ce10.chrX               774780  80 + 17718866 ACCC------GAGGGCAGACGTTCGTTTCGTGAGCA----------------------GACCACCTAGCGTACTAGATTTAGATGAGCAATTTGTTTGCATTTCTAAT
s cb4.chrX              21215031 104 - 21540570 GTCTGG----GAGGGCAGACGTTCATTTCGTGAGCCAGGGTTAGTTTGCAGTGGTCAAGGCCACCCAGGGTACTGGATATGGATGAGCAATTTGTTTGCTTTTCTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   538984 105 -  1162296 GTCTCGGCC-GAGGGCAGACGTTCGTTTCGTGAGTC-GGGTTAGTTTGCAGT-GTCAAGGCCACCCAGTGTACTGGATATAGATGAGCAATTTGTTTGCTTTTCTCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535221 101 - 33334924 gtgcG-----GCCGGCAGACGTTCGTTTCGTGATTC--GGTCAGTTTGCAGTGGTCAAGGCCACCCAGTGTACTGGATATAGATGAGCAATTTGTTTGCCTTTCTCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        74077 100 +   783054 GTTTA-----ACGGACAGGCGTTCGTTTCGTGATCT--GATCAGTTCGCTGT-GTCAAGGCCACCCAGCGTACTGAATATGGATGAGCAATTTGTTTGCCTTTctcat
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      228861  99 +   258924 ------ACCTACGGACAGGCGTTCGTTTCGTGCGAG--GGGAGGTTTGCAGT-GTCTAGGCCACCCGGTGTACTGAATATAGATGTGGAGCCTGTTTGCTTTTGTCAT
i caeJap4.Scaffold54    I 1812 I 620

a score=1910.000000
s ce10.chrX               774860 2 + 17718866 CA
s cb4.chrX              21215135 2 - 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   539089 2 -  1162296 ca
i caeRem4.Crem_Contig24 C 0 I 26
s caeSp111.Scaffold629   3535322 2 - 33334924 Ca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        74177 2 +   783054 ca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=-4774.000000
s ce10.chrX               774862  4 + 17718866 ATCA------------------------
s cb4.chrX              21215137 26 - 21540570 --GAGAAATGGAATTGAAAGAGGCCCCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3535324  4 - 33334924 ---------ggag---------------
i caeSp111.Scaffold629  C 0 I 25
s caePb3.Scfld02_62        74179  4 +   783054 ---------gaaa---------------
i caePb3.Scfld02_62     C 0 I 23
e caeJap4.Scaffold54      228960 620 +   258924 I
e caeRem4.Crem_Contig24   539091 26 -  1162296 I

a score=-2519.000000
s ce10.chrX               774866 19 + 17718866 ------GACTAGCCACGTTCTTTCT-----
s cb4.chrX              21215163 18 - 21540570 AATTAGAACTTTCG--------ACTT----
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold629   3535353 25 - 33334924 -----gaatttttggcCGTCTTACTTTTCT
i caeSp111.Scaffold629  I 25 I 10
e caePb3.Scfld02_62        74183 23 +   783054 I
e caeJap4.Scaffold54      228960 620 +   258924 I
e caeRem4.Crem_Contig24   539091 26 -  1162296 I

a score=1439.000000
s ce10.chrX               774885 15 + 17718866 GGACCAG--AATTAGAA
s cb4.chrX              21215191 15 - 21540570 AACTTCA--AGGCACAA
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24   539117 15 -  1162296 ggCCCCG--AATTAGAA
i caeRem4.Crem_Contig24 I 26 C 0
s caeSp111.Scaffold629   3535388 17 - 33334924 TGACTCATTAAGCGGAA
i caeSp111.Scaffold629  I 10 I 1
s caePb3.Scfld02_62        74206 15 +   783054 CCACCcg--aattagaa
i caePb3.Scfld02_62     I 23 I 91
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=-12869.000000
s ce10.chrX               774900  72 + 17718866 -------------------TTATGAGGGCAAATTGGGCCTGTGATTCACA-----------------------------------AACTAGCCCTAACA--CTTAAGAGCTATGATGAGTAATTTGTG
s cb4.chrX              21215206 102 - 21540570 C-----GA-----TTTCTGTTGTGAGGATaacaagaaaatgagattAACAGTGGTGAACA--AAGCGGCAACTAATTTTTGAGTGGATTAGATTTAATA--TTTGAG-----TGAtta-------att
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   539132 105 -  1162296 TCCTTGGACTGTTTTTCTCTTACAAGGCATACATGA----GTCATTAACA-TAATGAAAAACAAGCGG--------TTTAGACCGGACTGCA---AACA--CTCGAG-----TGATGAGTAACCTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535406  49 - 33334924 ------------------------------------------------------------ACAAGAGG--------ACAAAACTAGATTTCTGTTCACATTCTCAAG-----TGATGAGTAA------
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_62        74221  91 +   783054 I
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=101446.000000
s ce10.chrX               774972 232 + 17718866 TCTTTGTTTTCAGAAAAAACTCCCACGCGAATGTGTGTTTAGACAAGACCCGGAAGCCAAAATTTTCTTCAGCAAGGTT--TGAA--CT-TAGATAATTTTCGTAGTAATTGTAGTAATATTTTTCCAGATTACATTTGAAAGTCTTCTCGAAAATGCGGAAATCACCAATCCCATGCCGAATAACGCAGCTGATATATTTGAGGAATTCATGGCGAAGCCGAAAAAAACATTTTAA
s cb4.chrX              21215308 229 - 21540570 tgttttgtttcagaaaaaactccCACGCGAATGTGTGTTCAGACAAGATCCAGaagcgaaaatttttttcagcaaggTGTGTAAT--CAGGAAATTGCA------AAATATCAATCAATTATATTTCAGATCACATTTGATGCTCTTCTTGAAAACGCTGAAATCATCAATCCAATGCCAAACAACGCAATCGATGTGTTTGAGGATTTTATGAAGAAACCAAGGAAGACTTTTTGA
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig24   539237 232 -  1162296 CATTGTTTTACAGAAGAAGCTCCCACGCGAATGTGTATTCAGAAAAGATCCTGAGGCAAAGATTTTCTTCAGCAAGGTA-ATAATGCcaaaaaatgata----ttgaaAACAGAATACTGGTATTTCAGGTGACATTCGATGCTCTCCTTGAAAACGCTGAGGTCATCAACCCAATGCCAAATGACGCAGTTGATATCTTCGAGGACTTCATGaagaaaccaagaaaaactTTCTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535455 231 - 33334924 --TTGCTTTACAGAAAAAGTTCCCTCGCGAATGTGTTTTTCGACAGGACCCGGAAgctaaaattttcttcagcAAAGTA--TGAC--CCAGACTTGATTCTATTtagaaataattaatttttctcacaGATAACCTTTGATGCTCTTCTTGAAAATGCTGAAATAGTCAATCCAATGCCGAACGATGCTGTCGATGTTTTTGAAGACTTCatgaaaaaaccaagaaaaacattCTGA
i caeSp111.Scaffold629  C 0 I 258
s caePb3.Scfld02_62        74312 235 +   783054 cctatttttgcagaaaaatctaCCGAGAGAATGTGTGTTCAGAAAAGATCCGGAAGCAAAGATATTCTTCAGCAAGGTACTTCAA--CCGGCTTCGTGAATTATGAAAGAATATTGAATCTTGTTTCAGATAACCTTCGATTCGCTTCTCGACAATGCTGAAATTGTGAACCCGATGCCAAACGATGCTGTTGACGTTTTCGaagatttcatgaaaaaaccaagaaaaactttttga
i caePb3.Scfld02_62     I 91 C 0
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=-1620.000000
s ce10.chrX               775204 85 + 17718866 CTATTCTCATTAGTCCATGTTAATCCGTGATGCCTACTAACTAAATTTTTGCATTTCAAACAATCTTCGCTTTT---TATT-----------CTTTTAA
s caeRem4.Crem_Contig24   539469 57 -  1162296 -----------------ATTCGATTCTTCATGCTTgct-------------------------tttctgctttttcatttttgctatttttcctACTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        74547 59 +   783054 ----------------atttcgat--ttgaTGTTTCCTAA-----------CATTTAGGAATATCTATGCTTTTACATATT-----------ATATTAA
i caePb3.Scfld02_62     C 0 I 238
e caeJap4.Scaffold54      228960 620 +   258924 I
e cb4.chrX              21215537 47 - 21540570 I
e caeSp111.Scaffold629   3535686 258 - 33334924 I

a score=-5796.000000
s ce10.chrX               775289 499 + 17718866 CGAAGAAATATTGAATTCCACAGTGTTAGATACTTTTGTGATTACTGTATTTTGACGTTATTAATAAAGTGAACAAAAGGCAATCTCCAGATTTACAAGCTATGGGCCAATAACTTCAAAAAAGGATAAATAAAAATCAGCTTGGATAGGTGGAACTACCTCCGATCGAACTGGAAGCTGATGAAATCATCTCAATAAAATTTCGAAACAGTGTACTCTTGACCAAAAGTATGAGAGAACTGATTAAATTCTGCGGTGCACTGACCAAATCTAATTCTGCAATAGACAGGTTTATTTAAAAATAATAATACTGGTTATAATAACACTAACAATAACACTACCAAATTTTCAATGACCCAAATTTTCAATTGATAAACTGAATAACTGTTCCCATATTCCGAATTAATTATACTTTCACTTATGACCAGGAGTACTTAAAATCTCTTGCTAAGTTTGTATTTGCAAATCAACTACTTCATCCTTATTCTTGAATGAAGTT
s caeRem4.Crem_Contig24   539526 244 -  1162296 C---------------TCCGCATT-TTAGACGCT---GTGATATctg---------------aataaaatata--------attctGCAGTTGTCTAAG------GTTCCTGTCGTTGAAAAAGGA------------------------------------------------------ATGCAA----------AACATTTGGAGaca----------------aaatataacaaaatCTTTGAGGTTC----------------------GTCTCGTGATGGA-AGGTcaattaaaa-----------------------------------------tacattttcagaaa---aagttgttACATGTCAAAACAAGGATTTGTTCA---------------------TTTAACTCAT--CCA----TACACAAGATC----------------------AATC-----------CCATCTTCAAAAGtgcattt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        74606 238 +   783054 I
e caeJap4.Scaffold54      228960 620 +   258924 I
e cb4.chrX              21215537  47 - 21540570 I
e caeSp111.Scaffold629   3535686 258 - 33334924 I

a score=-820.000000
s ce10.chrX               775788 1 + 17718866 G-
s caeRem4.Crem_Contig24   539770 1 -  1162296 -c
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535944 1 - 33334924 G-
i caeSp111.Scaffold629  I 258 C 0
e caePb3.Scfld02_62        74606 238 +   783054 I
e caeJap4.Scaffold54      228960 620 +   258924 I
e cb4.chrX              21215537 47 - 21540570 I

a score=-9295.000000
s ce10.chrX               775789 147 + 17718866 ATTTATTTTTTAGT--TTCGGGTTTTTTCTAAAATTCTAAAAAATCATAAAATATAAAAAGTGGAAAGA-----------TCAAAAGAATCTTTAAAAGTGCAT---------------------------CCATGTCTTGGCTTTTTTTTGCCGCGCAGCAACGCTTCTCTCTTCCCT-CGCGTTAT
s cb4.chrX              21215584 165 - 21540570 ATTTTTCTATTAATTCGTCGGGAAATatatgaaaa-taaagaaaatactGTGAATACAAAGTTCGCAAA----ATCAAT-TCTCTAAAATCTTTAAAAGTGCATTTCCACCTTTTTCATGTCACCACAGTGGCATctctttgttatttttt----------atc------cTGCTCCTTGCG-GTTAT
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig24   539771  72 -  1162296 acttttttcctggC----------------------------------------------------------------------------------------------------------CTACCGCAGC-ACAActctttgttatttttt---------catctcttctctGTTCTCTTCGCGTTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3535945 168 - 33334924 ATTTGTTTATGCGT------TGTATTATCTGAAAGTTGaagaatacaatttttaaaagaaaccagaaaaaagtaCCGATAGCTTGTATACTTTTAAAAGTgtattctcactttttcttcttctcctctgt----gttatttatttttttct---------cgtcgCATT-TTGTCATTTCTGCGTTAT
i caeSp111.Scaffold629  C 0 I 2
e caePb3.Scfld02_62        74606 238 +   783054 I
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=5496.000000
s ce10.chrX               775936 62 + 17718866 CTGTAGTTTCTT----------CCTGTCACTTCCAATCACTCGGGGGG------------TCGAGCAGCGACGA----------TAGCG--------ACGAC
s cb4.chrX              21215749 71 - 21540570 CTGTAGTTTCTT----------CCTGTCAC-TCTAATCATTCGGG---------------CTGAA-----CCGAGTGAGTGGACATACAtgtgtgtctctgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   539843 76 -  1162296 CTTTAGTTTCTT----------CCTGTCAA-CCCAATCATTCGGGGGTCAACCCGCAAAACCGAA-----ACGA----------AAACGAGAGAGGCAAAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536115 58 - 33334924 CTAtagtttctt-cttcaccTTCCTGTCAC-TTCAATCACTCGGG---------------TCAAC----GCCGA----------AAACG-------------
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_62        74844 58 +   783054 CTTCGGTTTCTCGCTAtcacttcctctttt-tcaaatcactcGGG---------------TCGAC-----CCGA----------AAACG-------------
i caePb3.Scfld02_62     I 238 C 0
e caeJap4.Scaffold54      228960 620 +   258924 I

a score=45055.000000
s ce10.chrX               775998 159 + 17718866 ATA--TGTGTGTTTTTT-AGTTGCTAGTCCGTGGTGACCCAAAGAC-GGGCAGTGAATCGTGATTTC-GAGTGATT--AGACTGATAACCGAGCCGGAGAATA-GAGAAAATGGAGGCTCATCCTCGCGACCCGGCGCGCAGTTCG------------------ACACGCCATGT---TCTTT---------ATTTT
s cb4.chrX              21215820 160 - 21540570 gtg--tgtgtgtttttt-agTCGTCAGT----------CCTAAGAT-CGTCAGTGAATCGTGATTTC-AAGTGATT--AGACTGATAAATGG------------AACGAAGAAGGGGCTGATCCGTACGGCTCGGAGCGCGCATagaaggagagaaagagagagagtcATCATGTACCTCTTTTCTTTG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   539919 152 -  1162296 ACA--TGTGTGTTTTTT-AGTCGCTAGT----------CCCAAGAC-CGTCAGTGAATCGTGATTTC-GAGTGATT--AGACTGATAAATGG----------GCAAGAGAAAAGGGGCTCATCCGTACGACTCGGGACGCACATAG---------------GGGGGTCATCATGT---TCTTTTCTTTGCTTCTCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536173 156 - 33334924 ACA--TGTGTGTTTTTT-AGTCGCTAGT----------CCCAAGTCGCCTCAGTGAGTCGTGATTTCGAGGTGATTAGACATTGATAAATGGAGAGG-gaacg-aagagaaagagggctCATCCGTTGAACTCG-------CTCTG---------------AGAAGTCATCTTGT---TCTTT-CTTTGCTTCTCTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        74902 134 +   783054 ACATTTGTGTGTTTTTT-AGCCACTAGT----------CCCAAGAC-TGTCAGTGAATCGTGATTTT-AAGTGATT--ACCCTGATAAATGG----------G-TAAAGCAAAGAAGCTCATCCGTTGAACTCG---------CTG---------------CGCAGGAGACTTGT---TCTTT----------TCCC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      229580 113 +   258924 ATG--TGTGTATTTTTTGGGCTGCCCGT-------------------------TGAATCGTGATTTT-GAGTGATT--ATACTGATA-----------------AAAAAGGGAAGAGCTCATCTCT-CTTCTCG------GCGCCG------------------AGttgtcatgt---tttttttctt---------
i caeJap4.Scaffold54    I 620 I 446

a score=-13391.000000
s ce10.chrX               776157 197 + 17718866 CCACCCGGAGCAACTAGCCTACCAAATATAG-ACAT-----------GACATGAAGTGCGGACCGCCCATAAGACTACCTTATCCTTGTGCCTCCTTCATTGAGCAAGCTAAAAAGT-GGCACTCACCGTTCATTCTTGCATTATC--------------------TGAAGG----TCCAG---GAGCCGCATCTTATCAA-------TTTATTT----ATTTCTGGTGAACGTTTTTTTTTCAATTT---
s cb4.chrX              21215980 199 - 21540570 CGAGGTGAAAGCTAAAAGCATCCCAATTTAG-ACA----TGGGGTGGAGACTGTAGTGC---CCGCCC------TGATCCTATTCCCCTGGttcgagaaagaaaaaggCTAAAAAGT-GGCAGTCTGTGCTCAGTCTTCAAGAATC--------------------TTAAGAAAACTGAAGCC-AAACT-----GTATTGAAT-----TCTATTT----ATTTCCGATTGATA-GTGCTGATTGACCAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   540071 205 -  1162296 CGAGACAGAGCCCTTCCAACTCCCAATATAG-ACAT---TTGGGAGGAGAAAACAGTGC---CCGCCC------TTATTCTATTGCTCTGATTC-CTAAAGACCCCAGCTAAAAAGT-GGCAGTCAGCAGTCAGTTCAGGAGTATC--------------------TGAAGG----CGAAGAA-GAGCTTCTGCTCCCTgaatattccttttttt----cttcccataCGGTA--TTTTGTTTAATTCATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536329 186 - 33334924 CAA---------------CGACCAAATATAGAATATAGgtggagaaagaggaggagccCATTCCGCCT------TTATCCGATT-----GGTTC---TAAGAAGCTAGCTAAAAAGTGGGCACAGAACAGTCAGTGTTGGAGTATTTGGAGCAACCGACGAGGTCGCTAAAA----TCAATTAGGTATT-------------------TTTCTCT----GCtctaaatt------ttctatttcattt---
i caeSp111.Scaffold629  C 0 I 173
s caePb3.Scfld02_62        75036 165 +   783054 CAA---------------CTTCCAAATATAG-ACAT---TGAGGGAGGTCAAGTCATTTTCTCCGCCC------AAATCTTAATTCCC-GGGGC---ATAGAAGCCAGCTAAAAAGT-GCCACAA---ATGCAGTCTTGGAGGCTT--------------------CTAATG----TGCATGA-GTGCT-------------------TCTATCCAAAGATTCtaccat------tttttctcaattt---
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold54      229693 446 +   258924 I

a score=-5742.000000
s ce10.chrX               776354 15 + 17718866 GAAAT--------------ACTAGAAGTT------
s cb4.chrX              21216179 23 - 21540570 GTTAT------TCTTTAGCACTAGAAATC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   540276 28 -  1162296 GCTATTTCGACTCTTTTG-ACCATTTATA------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        75202 15 +   783054 --------------------aaagTAACAAAGGCT
i caePb3.Scfld02_62     I 1 I 345
e caeJap4.Scaffold54      229693 446 +   258924 I
e caeSp111.Scaffold629   3536515 173 - 33334924 I

a score=-1703.000000
s ce10.chrX               776369 40 + 17718866 ATCTATCATTTGTA--ACAAATATTATAATAGAGCCACATCT
s cb4.chrX              21216202 42 - 21540570 AgctgtttttttcaacttaTTTACTATCACAGAGATTCGTCT
i cb4.chrX              C 0 I 212
s caeRem4.Crem_Contig24   540304 30 -  1162296 AGGAGGTTTT------GTAGTGATAATGACAAaatt------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        75217 345 +   783054 I
e caeJap4.Scaffold54      229693 446 +   258924 I
e caeSp111.Scaffold629   3536515 173 - 33334924 I

a score=-5965.000000
s ce10.chrX               776409 691 + 17718866  
s caeRem4.Crem_Contig24   540334 425 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        75217 345 +   783054 I
e caeJap4.Scaffold54      229693 446 +   258924 I
e cb4.chrX              21216244 212 - 21540570 I
e caeSp111.Scaffold629   3536515 173 - 33334924 I

a score=184.000000
s ce10.chrX               777100 14 + 17718866 AAAAAATGGCCGAA
s caeRem4.Crem_Contig24   540759  7 -  1162296 GAAAAAT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536688 14 - 33334924 aaaaaacctttgaa
i caeSp111.Scaffold629  I 173 C 0
e caePb3.Scfld02_62        75217 345 +   783054 I
e caeJap4.Scaffold54      229693 446 +   258924 I
e cb4.chrX              21216244 212 - 21540570 I

a score=-646.000000
s ce10.chrX               777114 30 + 17718866 AAAAAACCTCCGGGC---AAACCTTAGACGACA
s caeRem4.Crem_Contig24   540766 18 -  1162296 ----------TAGGC---AAACTTGAAGAGA--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536702 25 - 33334924 ---aaaaacatgggC---AAACTTTAAAAGA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        75562 30 +   783054 -aaaaaaccactagcaaaaaatattatagGT--
i caePb3.Scfld02_62     I 345 C 0
e caeJap4.Scaffold54      229693 446 +   258924 I
e cb4.chrX              21216244 212 - 21540570 I

a score=120042.000000
s ce10.chrX               777144 319 + 17718866 CGGATTTTCCGTTGTGTTTCCCAAGTTTTTTCATC-------TATTTGGCAGTGTCCTTC--CTCCCCGTCGTCCGTCAACAATTGT---TCGTCCAGGTGTAGTGACCACTGCGAAACGCACTTTTTTGTTGGCTCATTTCAAAacaaacacacacacacacacacacacacacacacacCGAGACGGA--CAGCGG--GGTGCTACGATAATGGCTAGAGACCAGAAAAACT-GGAAAAAGAGCAAAAAACCGGAGAATCAAAGGGGGA---------CT-------CTCATTCATTGCTCACCCTTTCCCCCTTTATTAGGCGGCTCCTTTTGCGCG-AACCGAACATGG
s cb4.chrX              21216456 279 - 21540570 CGCGTTTTCCGCTA------------TCTTTTAccc--ttctcttttctctgttTTATCG------TCGTCATCCGTCAACAATTGT---TCGTCCAAGTGTAGTGACCACTGCGAAACGCACTTTTTTGTTGGCTCATTTCAAAACAAACACA---------------------AAGT---GAGA-GGA--CAACGG--GGTG---CGATAATGGCGAAAGAccagaaaaactagaaaaaagagcaaaaaaccGGAGAATCAAAGCGGGG---------CCCCTCAACCTCATTCATTGTTCAGTCT-------TATATTAAGCG--TCCTTTTTCGGA-AGGCGAACATGG
i cb4.chrX              I 212 I 82
s caeRem4.Crem_Contig24   540784 290 -  1162296 CGGATTTTCCGttctgttctc----tttttttgctcatttcgtTTTCCGCTGTCTTCTCTC-CTCCCCGTCGTCCGTCAACAATTGT---TCGTCCAAGTGTAGTGACCACTGCGAAACGCACTTTTTTGTTggctcatttcaaaacaaacacA---------------------AAGT---GAGA-GGA--CAACGG--GGTG---CGATAATGGCGAGAGaccagaaaaactagaaaaaagagcaaaaaaccGGAGAATCAAAGCAGGC---------CC-----AACTCATTCATTGTTCGCCCT-------TATATTAAGCA-CTCCTTTTTCGGA-AGTCGAACATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3536727 309 - 33334924 CGGATTTTCCGTTCTGTCTT------CATTTCGcccttctcattttccgctgtctcctttttctgtcttttatCCGTCAACAAATGTTCCTTCCCCCCAAGTGACCACCACTACGAAACGCACTTTTTTGTTagctcatttcaaaacaaacatA---------------------AAGTGGGGAGA-GGAGGGGACGGACGCTG---AGATAATGGTGAGAGAccagaaaaactagaaaaaagagcaaaaaaccGGAGAATCAAAACAGGCGCCTGAGTACT-----CACTCATTCATTGTTCGCCCT-------TATATTAAGCA-CCCCTTTTTCGGGCAAATGAACATGG
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_62        75592 271 +   783054 CAAGTTTTTCGTtccgtatt------tttttc----------tcttccgcCGGTCTTCTTCTCTGTAC-----------ACAATTGTTGTTCGTCCTGGTGTAGTGACCATAGGAAAACGCACTTTTTTGTTGgctcatttcaaaacaaacat-----------------------aGCAGTGAGA-GGA--CAACGG--GCCG---AGATAATGGAAGGAGAccagaaaaactagaaaaaagagcaaaaaaccGGAGAATCAAATCTGGT---------CA-----CACTCATTCATTGTTCGTGCT-------TATATTAAGCA-TTTCATTTCCAGCTAG--GAACATGA
i caePb3.Scfld02_62     C 0 I 3
e caeJap4.Scaffold54      229693 446 +   258924 I

a score=-14024.000000
s ce10.chrX               777463 98 + 17718866 ----------TGGTCATCTTGAACAGTTGATTCAATTTAAATTTCGTTCTTAGCCCTCGGATTTCGTTTCTTCTCATCACG-CTTA-GA--------AATATAAAAAGGGCGAACAAA---------
s caeRem4.Crem_Contig24   541074 73 -  1162296 -------AAGTGACCATCA--------------------------CTTGT-------CCAATCTCTC-----TTAGCTGGG-ATCGTCG--------TCTATTAGaagcaaaatttgaatgaaagcA
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold629   3537039 78 - 33334924 TGACCATCTGTGAATAGCT--------------------------GCTgt-------accatttttcttttttttgcttaa-GTTA-CG--------AATATAGACAAAATAAACTTCATA------
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_62        75866 89 +   783054 TA-----CTGAGGTCGTTT--------------------------GCTATAGATCCAAtgattttgcattttttcattgaatatta-cgtttccaataattttggaatacaaatttttcca------
i caePb3.Scfld02_62     I 3 C 0
e caeJap4.Scaffold54      229693 446 +   258924 I
e cb4.chrX              21216735 82 - 21540570 I

a score=2823.000000
s ce10.chrX               777561 83 + 17718866 TGTTTGTTCAGTGCCATTTCTCTGTTTTCCTGAAGGTTCGATCTGCCTGT---CCAGTGCTCG--CTGAGCATAT---------TCCTT--------------TCATTTTT
s cb4.chrX              21216817 93 - 21540570 TGTTTGTTTAGTGCCATT-ATAACTTTTCCTGTAGGTGCGACTTGCTTGC---ATA---------CTCAGCATatcatttttattcttttcttcGACTTAAGCTCA-----
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig24   541154 93 -  1162296 TATTTGCTTAgtgccatt--tttcttttcctgaaGGTGCGACCTGCTTGT---TTAGTGGTCG--CCGagcatat--ttttatttcatttcctcgattt----tca-----
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold629   3537117 68 - 33334924 TATTTGTTCAG---------TGCCATTTTCCGAAGGTGCAACCTCCCTTCAGGAAA----ACG--CCGAGAATAT---------TCGTT--------------TCA-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        75955 75 +   783054 tatttGTTCAGCAgtat---tttcattctctttgaGACAGACCTTCTGTC---AAA----TCGTATAAAAAATAA---------TCCTT--------------TGAAC---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      229693 446 +   258924 I

a score=292238.000000
s ce10.chrX               777644 626 + 17718866  
s cb4.chrX              21216910 570 - 21540570  
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig24   541247 604 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 72
s caeSp111.Scaffold629   3537185 546 - 33334924  
i caeSp111.Scaffold629  C 0 I 79
s caePb3.Scfld02_62        76030 572 +   783054  
i caePb3.Scfld02_62     C 0 I 637
s caeJap4.Scaffold54      230139 644 +   258924  
i caeJap4.Scaffold54    I 446 C 0

a score=-11248.000000
s ce10.chrX               778270 60 + 17718866 TCGTATTTCTAAGATCATAA--GACGATCTTTTCA----------AGTGTCGCAT--CCGG--TCAAGCCAGACAA-----
s cb4.chrX              21217516 55 - 21540570 caacaatccaaaaatctgaaatgtggatgttttga----------------aaat--cctg--tTAGTTC-AGCAT-----
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig24   541923 65 -  1162296 CAATGACTTAAAGATCATAGCTTCAAATCTTCTGA-----TCTAGATTT-TACAT--CCGG--CAAGGTC-AATAG-----
i caeRem4.Crem_Contig24 I 72 C 0
s caeSp111.Scaffold629   3537810 74 - 33334924 TATAGAAACAAATGCCGCAAAGGCCAATCTTGCAAACTTGTCTGGATTTCCACAT--CCGGACTCAGGTCAAATAG-----
i caeSp111.Scaffold629  I 79 C 0
s caeJap4.Scaffold54      230783 58 +   258924 -------TCATATTTCATTG--AAACATTTTATTA----------AGTATCAAATAGTCGT--Tcaaaa--aacaagacaa
i caeJap4.Scaffold54    C 0 I 29
e caePb3.Scfld02_62        76602 637 +   783054 I

a score=-2274.000000
s ce10.chrX               778330 36 + 17718866 TTCTATTGGTA--CTTTTTTGTATTAGCAA---------------AGAGCAAA
s cb4.chrX              21217571 37 - 21540570 CCCG-----TAACCTT---TTTGTCCGCAA--------TATTGCCTGAATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   541988 53 -  1162296 CCAATTCACTAAGTTTTTATTTGTCCGCGATGAGTCTCTATCGTCTGTGCAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3537884 43 - 33334924 ACTTGTCAATAGGCCATTTTTGCTGCGCAA----------TCGTCTGTACAAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        76602 637 +   783054 I
e caeJap4.Scaffold54      230841 29 +   258924 I

a score=-5079.000000
s ce10.chrX               778366 17 + 17718866 CAAT-----------------------CACAGAGAAAACA
s cb4.chrX              21217608 27 - 21540570 CAAAGATCAGACAG-------------CAAAGACTAGCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542041 39 -  1162296 CAACAA-CATACAGAAACAGTCACAAACATAGACAGGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3537927 13 - 33334924 ---------------------------CATTAACTAGCCA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold54      230870 17 +   258924 -----------------------caaacacaagaagaaca
i caeJap4.Scaffold54    I 29 I 58
e caePb3.Scfld02_62        76602 637 +   783054 I

a score=-4877.000000
s ce10.chrX               778383 57 + 17718866 TGAAATTTGATGCGCGCCTTTTGTGGAGTACAGTTTG-AGAGATTG------TCCAGAAACTTG---------
s cb4.chrX              21217635 50 - 21540570 TGAAATACGATATCC--AATTTATCG---ACAgtctt----gattt------ttctgaccACCAG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542080 36 -  1162296 TGACATCTGACACCC-----TT-----------CCTT----GATTT---------TGGAGACCAG--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3537940 68 - 33334924 TGATATTTGATATCC--CGTGTGTAG---ACGGTCTTTGGagatttttgacatttcgaTTCTCAGAAAACACG
i caeSp111.Scaffold629  C 0 I 7
e caePb3.Scfld02_62        76602 637 +   783054 I
e caeJap4.Scaffold54      230887 58 +   258924 I

a score=-5884.000000
s ce10.chrX               778440 18 + 17718866 AAAATCAAACA--------------------ACAAAGA
s cb4.chrX              21217685 19 - 21540570 -AAATACGGAAAA------------------GACAACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542116 32 -  1162296 -GATTCAGGACGATCTtagattttgc-----aaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3538015 38 - 33334924 AGAACGAAAAACGTATTCAACATATCTTCTGATAAAAG
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_62        77239 11 +   783054 agaa---------------------------ataaaaa
i caePb3.Scfld02_62     I 637 C 0
e caeJap4.Scaffold54      230887 58 +   258924 I

a score=474938.000000
s ce10.chrX               778458 582 + 17718866  
s cb4.chrX              21217704 571 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542148 573 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3538053 574 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        77250 584 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      230945 577 +   258924  
i caeJap4.Scaffold54    I 58 I 42

a score=-18584.000000
s ce10.chrX               779040 42 + 17718866 TACATCAATTCTCATTAACTTATTC------------------AAGAAGTTAAATGTAA----C------------
s cb4.chrX              21218275 44 - 21540570 --catc---tttgaaaaaaaaataa------------------agagaaataaaaaCAA----CGATTTAT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542721 31 -  1162296 --TATC-----------AAATCTTA------------------AGATCGAT-----TAT----CTAATTTT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3538627 34 - 33334924 --GA-------------AGATTTTT------------------AACTAACTAGTCCTTA----TCAATGAT-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_62        77834 61 +   783054 --ta-------------actcttttttttacatttttttttcgaaataagctgttttcaaaattgaatcataACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      231522 42 +   258924 I

a score=567528.000000
s ce10.chrX               779082 1300 + 17718866  
s cb4.chrX              21218319 1299 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   542752 1298 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3538661 1186 - 33334924  
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_62        77895 1424 +   783054  
i caePb3.Scfld02_62     C 0 I 2215
s caeJap4.Scaffold54      231564 1204 +   258924  
i caeJap4.Scaffold54    I 42 C 0

a score=-9135.000000
s ce10.chrX               780382 51 + 17718866 AAAATTCATGattttattata--------------ttatatttttGTCCACCATATGCACata-------tt
s cb4.chrX              21219618 25 - 21540570 ------------TTAATTGTC--------------TCACTT------------CATCCACATA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   544050 24 -  1162296 ------------tttattctg--------------ttactt-------------atacatatg---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3539853 29 - 33334924 -------------taatt-----------------tcactg-------------atttatattgtgatattc
i caeSp111.Scaffold629  I 6 C 0
s caeJap4.Scaffold54      232768 50 +   258924 ---atttattaatttattatcattatAATCCTTGTTCACTT----------CACAAAAATATT---------
i caeJap4.Scaffold54    C 0 I 6727
e caePb3.Scfld02_62        79319 2215 +   783054 I

a score=17424.000000
s ce10.chrX               780433 81 + 17718866 ttatttatattattatttatttataCATTTTTGACGAACGTTTCGTTAGTTACTGAATCGACAATGCCGGT---AAAAGATTCA
s cb4.chrX              21219643 58 - 21540570 ----CTATATT-TTA---------------TTGACGAACATTTCGTTAGT---TGGGCCGATCATGCCggt---aaaaaagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   544074 75 -  1162296 -tatttctatt-ttatatatttctat-tatttGACGAACGTTTCGTTAGT---TGAATCGATAATGCCGGT---AAaggattca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3539882 68 - 33334924 atattcatttt-tta------------tttttgacgaACGTTTCGTTAGT---TGAATCAATAATGCCGGTatcaaaagattca
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I

a score=-9368.000000
s ce10.chrX               780514 111 + 17718866 ATAAAATATGATTT----------------------------ATGAGA------AATTGTTAAAATTGA---------------------------GACAAAAAAAATCAAATGATTGTAAGAGAACTCTG------------------------ACATAAAAACATGTTTTTGGA------GACAGAATGCTAATAAGTAA
s cb4.chrX              21219701  45 - 21540570 g-aataaataattt----------------------------------------aattttcgaaatttt--------------------------------------------------------------------------------------tcatccA--------------------GGCATTATAC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   544149 201 -  1162296 a-aataaattatttattaacAATATTCTGTTGAtacaaaaatatgagaaattgGAGTTTTGGGAGTTTTGGATAGTTTTTACAACATAATATCCATGAAACaaggaataaaatttaatgaaaaggAATTTGAGAAGTTGTAAATGTGGGAgggaatcatcaaaaaaggcTAGTGTATCGCGGGGCATATCTCTGAAAACTAA
i caeRem4.Crem_Contig24 C 0 I 342
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeSp111.Scaffold629   3539950   0 - 33334924 C

a score=0.000000
s ce10.chrX               780625 25 + 17718866 GCAATTTTTTTTTCTTGTTAAGTTC
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21219746  0 - 21540570 C
e caeSp111.Scaffold629   3539950  0 - 33334924 C
e caeRem4.Crem_Contig24   544350 342 -  1162296 I

a score=-7413.000000
s ce10.chrX               780650 262 + 17718866 AAATAAGTAAGTTTAATACAAAATGTTTGAAGAGAAAAAAAACATTTAAGTGTGAACATTTTATGTTGGCAAAGATATGACCTGGGAATGCAAAAAGGAAACAAGGAATTAGACAGATCTTTAGTAATTTTGTGACAACGAGAAACTAGATCAAAGTAGTAAT--TTTGAGGTGCACTCCTAAAAACAAAGGCCTGAAAAAAAAAACTATAATCGGATTTTTGCAAACGAAACAAATTTTTCTAATATAATATAATAGCTGTAT
s cb4.chrX              21219746 157 - 21540570 -AATAAAATACAttcatatca-----------aaaatatacaC-------------------ACGTCCAAAAAGAT--------------TTAGAAGGAAGCATGGAATTcag-------------------------tgaaaa------ttgaagaactaACTATTTGGGTGATGCGACTATGATCAAACGTC-----ATAAAAGCT-------------------CAAAACAAGCTGGTGTATCGTG-------GAGTGTAT
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold629   3539950 154 - 33334924 aaataaattattttaaaacta----tctaattagaaaataaac-------------------atGTTGAACAACGT------------CGCTAGAGAGATATCAGAAGTTAAG-----------------------ACTCAAAACTTGTTTTGAAAGATTATTAAATTTATTTCCGAGA--------------------ATAATAGCG-------------------AGGAATCAGA------attata-------aacttttt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeRem4.Crem_Contig24   544350 342 -  1162296 I

a score=-3102.000000
s ce10.chrX               780912 41 + 17718866 TTTGAACCAAAAGAGCTTGTGAAGAATTTAAAAAATTAATG
s cb4.chrX              21219905 24 - 21540570 -CTAAAACGAAAAATCTTGTTGAtg----------------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   544692 36 -  1162296 -tccgtacaaaaaaagctgtcaacaac----aaaactaaag
i caeRem4.Crem_Contig24 I 342 I 149
s caeSp111.Scaffold629   3540104 25 - 33334924 tttcaattcagagaagttaaaattg----------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I

a score=-5563.000000
s ce10.chrX               780953 126 + 17718866 AAAAAATGGACTGGTTATTCAAGCTAAAAGAAAAATATATAAAGAGAAGTTCATTAGAATAAACTGGTAT-------------ATCTTGGGGAATATCTCTGAAAATGTGAAGTTTTTCAGCTGAAA---TTAAACAAAAGT
s cb4.chrX              21219929  88 - 21540570 --taaagaagaaaaattttaaagg-gtgTCTCAGACGT--------------CAGAGAacaattatttaa-------------tttttagagCA-------GAAAACCAA-----------CTCAATCATTCAAAC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3540129 133 - 33334924 aacaaatcGGAATGTTCTCAAAGTCGAGTCCAAAATATAT---GTAAATTTACTGTGAAATATTGATTAGAAAAGGCTGTTGTATCTTGGAGTATATCTCTGGAAAATAATATGTTCTTATCTTGACACTTCGAAC------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeRem4.Crem_Contig24   544728 149 -  1162296 I

a score=14346.000000
s ce10.chrX               781079 272 + 17718866 TTACCTTTGCAGTTTTCCATGACACACATGTATGTGGGGGTAAGGGTTGTTCGTATTCCTGAAAGTTACATTATTTTTTATTCCAGTCCAATCAACAAAAAA--AAAACCAAACTAACCGTTTCCCAACAGTTTGTGTAAATACCATTTGTATCAGGAAC----------------TTCTA--AAATGGCA--------TTGTCATCTC-------------------------------TTCCCCCTCTTTGGTTGATTTCCGTCCAACGTCTTCGTTCGTTTTGCAATGCTCTTTTTTCGACAGATGGCATAGTGTCCCTGCCCT----------------------------------------------------------------------------------------------------------GAAA
s cb4.chrX              21220017 420 - 21540570 TTACGCGAGAAGCTTTCCAAACGACACTTGTGTGAAGTGGCAATGTCTCTTCGTACTCCTGAAAG--------------ATACTAGAACATTCGATAGatac-tttgatttttgttacCGCATTCCAATGATTTGTGTGCTTTCCATTGGTATCTGGGACCACCAGATCTATGTTATCGTActgaaaaacaacatttattgattttctctctttcttttttgttctcataG--CTTACGTTTCCACCTCTTTCATTAATGGAAGTCCAACGTGTTTTCTCTACTTGCAATGCTCGCTTTTCAACAACCGGCATTGCATCTTTTTCCTGTAAATTACTTCCGTGAACAtgtaattgattttttgaatgtattTACATGGCGCTACTATCTGCCTGACAAATATAAAACTGCGTCGAGCGATTAAACTggtaaacaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   544877 308 -  1162296 TCACCTTTGGCATTCTCCAAGTGTCACTGGTGTGTGGTGGTAGCGGTTCTTCGTATTCctaaaaa--------------aatctatttcatCCAGTTTTAACATCCCATTTCCCTTACCTCTTCCCAATGGTTTGTTCTTCGACCATTTGTATCAGGAATAGGAATCTCCACATTGTCATACTAAATAATA--------TAAGTTTCTC-----ATCATAAATCCTAACAATTTTTACCCTTCCTCCTCTTTCATTAATCTCCGTCCAACGTCTCCGCTCTTTCTTTAATGCTCGTCTCTCAACAGCTGGCATCGTGTCATTGCCCT------------------------------------------------------------------------------------------------------AAATAAAA
i caeRem4.Crem_Contig24 I 149 C 0
s caeSp111.Scaffold629   3540262 257 - 33334924 TTACTTTTGGGGTCTTCCAACTAGTGCATGTATGCAATGGTAGCGGCTCTTCATACTCTTCA---------------------------ACCCAATGATTAG-TGTTGACTCCATTGGTATCTGGCAA---TCCGAGTTCCACGTCTTCgtactgaaaataaac------------ttaTGGTAAATGTAA--------TCTGTTTCTA-----------------------TGTTACCCGTTCTCCTCTCCTATTAATTTCTGTCCAACGTCTTCTCTCCACTTCAAGAGCTCTTCTTTCAACTCCTGGCATAGTATCTTTTCCCT----------------------------------------------------------------------------------------------------------AAAA
i caeSp111.Scaffold629  C 0 I 32
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I

a score=-5146.000000
s ce10.chrX               781351 36 + 17718866 GC--GT----------------------------------ACGATCTTATCACTG-----GTTTATGTT--------TAT----CAAAG
s cb4.chrX              21220437 89 - 21540570 atttgtctgaacATTAAACTGAGCGACAAAACAgttaaaaactgtaatataaACGTCTGCTTTATTGATACGTAAAATATACCAAAAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   545185 43 -  1162296 ACCAGT----------------------------TTATAGACAG--ATATCAATG-----TTTATTAGT--------TAT---AAAAAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeSp111.Scaffold629   3540519 32 - 33334924 I

a score=40349.000000
s ce10.chrX               781387 161 + 17718866 TCACATCTGCCTGATTAACAATAGCATTTCTAGTTAGATGATACCCAGCTTTTCCAAAATATCGATTATGGTAATTATCTCTGGCTCCATTTGCACCGTCACCATTCTGATTGTCAACTCTCCAATAAACATTTGAAAATCTTGTGGAGATCTGGAGAAAT
s cb4.chrX              21220526 161 - 21540570 TCACGTTTGCACAATTTTCGATTGCGTTTCTTGTTATATAATAcccagattttccaaaataccgGTTATGATAATTATCAATAGCACCAACAGCTCCACTTTCATTGTGATCTTTAACTCTCCAGTATTTTTCTGAGAACCTTCCGCTGATCTGTAAAAAT
i cb4.chrX              C 0 I 618
s caeRem4.Crem_Contig24   545228 158 -  1162296 GTACATTCGCTTGATTTTCAATTGCGTTCCGGGTCAAGAAGTAGCCAGCCTTTCCGAAATAACGATTATGATAATTATCTCTTGCTCCAATAGCGCCTTCACTATTGTAGTCCTCCACTCTCCAGTACGTTTGCGAAAATCTTTCAGAGATCTGGAAT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3540551 157 - 33334924 TTACATTAGCCTGATTTTGAATTGCATTGCGTGTCAAATAGTATCCTGCCTTTCCAAAGTATCGGTTGTGATAGTTGTCTCGAGCGCCAACAGCACCATCCTCGTTGTGATCTTCTACTCTCCAGTACATACTAGAAAACCTGTcggaaatctgaaa----
i caeSp111.Scaffold629  I 32 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I

a score=7613.000000
s ce10.chrX               781548 240 + 17718866 TACTTAAACGGACTACTACACCAATTCT-GTTTGGAGTATAATCTCACCTCCTTAGCAGCAGGGCTACTGACAGATGCTGTAAGATAATCGGAATTTTCCGATTCTGATGCTTCTGGTATGGCGGTTGAAGCAAAATCAGA------GGAGTA---------------------------GGAGTCGGATACGACA--AAACATCGATCCCTTTCGTAATCTTCGTCTTGTTGTCGGAGGTAAACATTTTCATAACTATCAGCATGCAACTGGAAA
s caeRem4.Crem_Contig24   545386 251 -  1162296 --TTATAACATTTTCTTGCAGAATGACC-ATTTAA--------CAAACTTCTCTAGCAATTGGGCTACTGATAGAGGCAGTTTGGTATTCAGA------TGACTCTGATCCCATTGGAACTGCTGTGGATGCAAGAACAGAATTAAAGGAATATGACTCT---ACATATTTTCCT-----GATGTCTCATCAAGCAGTAACAATTGTTCTCTTTCACGTTCTTCCGCTTCCTGCCGTAGGTATACATTTTCATAACTATTTGAATTtagctaaaaa
i caeRem4.Crem_Contig24 C 0 I 787
s caeSp111.Scaffold629   3540708 254 - 33334924 -------acttcaaatttctaaATACTCAATTTGAAT-----GCATATCTTCTTAGCTGAAGGGCTACTAATGGAAGCAGTCTGATAATCAGAACTGTTTGAATCGTATTCTTCTGGCATATCAGTAGATGCACATTCGGATGGGCGCGAATATGATTCTGGGAGATACTGTGCTTCAAGAGAGTCATATAAAACA--CGCCGTTGCTCT------AGTTCCTCCGCCACTTGTCTCAGATAGACGTTTTCGTAACTGTTTTCGTCCAGCTGAA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21220687 618 - 21540570 I

a score=696.000000
s ce10.chrX               781788 18 + 17718866 AAGAGTTTTTAAAGTTTA
s caeSp111.Scaffold629   3540962 18 - 33334924 Aagatttgtgaaaaatta
i caeSp111.Scaffold629  C 0 I 701
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21220687 618 - 21540570 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=0.000000
s ce10.chrX               781806 702 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21220687 618 - 21540570 I
e caeSp111.Scaffold629   3540980 701 - 33334924 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=4642.000000
s ce10.chrX               782508 105 + 17718866 CTTTCAACGGCCAATCTCCTTTCTTCTTTTTGTCTATTCTCATCATTTTCAAAATAAGTTGGGCTTGTGAAAAAATAATTCCGTACTTGGCGTTGTTCCTTTAAA
s cb4.chrX              21221305 105 - 21540570 CTTTTATTCTCTATTCGCTTTTCTTCCGCTTTGCGGTTTTCATCACTTTCAAAATACAATGGTCTGGTGAAAAAATAGTTGCGTATTTGTCGTTGCTCCTGTCAA
i cb4.chrX              I 618 I 23
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeSp111.Scaffold629   3540980 701 - 33334924 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=0.000000
s ce10.chrX               782613 667 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21221410  23 - 21540570 I
e caeSp111.Scaffold629   3540980 701 - 33334924 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=2575.000000
s ce10.chrX               783280 39 + 17718866 CTATATTTTTACCTCTGAATACGTCATCAATTCAGATCC
s cb4.chrX              21221433 39 - 21540570 CTATTATTCTACCTCTGAATAAGTCATCACTTCGGATCC
i cb4.chrX              I 23 I 955
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeSp111.Scaffold629   3540980 701 - 33334924 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=0.000000
s ce10.chrX               783319 840 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21221472 955 - 21540570 I
e caeSp111.Scaffold629   3540980 701 - 33334924 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=91.000000
s ce10.chrX               784159 1 + 17718866 A
s caeSp111.Scaffold629   3541681 1 - 33334924 a
i caeSp111.Scaffold629  I 701 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21221472 955 - 21540570 I
e caeRem4.Crem_Contig24   545637 787 -  1162296 I

a score=884.000000
s ce10.chrX               784160 4 + 17718866 ACTC
s caeRem4.Crem_Contig24   546424 4 -  1162296 ACTC
i caeRem4.Crem_Contig24 I 787 C 0
s caeSp111.Scaffold629   3541682 4 - 33334924 actt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21221472 955 - 21540570 I

a score=42068.000000
s ce10.chrX               784164 361 + 17718866 ACATATGAAGCACTGTTTGCTAGAAGTATATGCCCTGAAGTAGTGTGATCCGTGCTACCGTAGCTCATGAACTGACGATATAAATCTATACAACCGGGTCGTTGGCATGCGCTTTGATTTCTCAATGAGCTTGGACA---------GTTCA-CGTTGTATAATGAACTGGTGCGTATG----------ATTTTCTCTGAAACTTTTCAAATTC--AGCTTTAGGGATTTGCTTGC-TCTTACTTTTGATAGACTCGTCAGACGATGAAGCCAATGAATCGTCATCTTGATCGATATCGATC---GAGACTGATCTACTGACACGCCAACGAATGTAAATATATTCAAATATGCTCAGAAACAGCATAACTAGGCGAGTCGTCTGAAA
s cb4.chrX              21222427 353 - 21540570 acataAGAAACACTGTTGGATAGAAAAATATGTCCAGGAATTGTGTTGTCTACTGTGCCGTAGTTCATAAACTGTCTATAAACGTCAATGCATGCCGGTTTCTGACAATAGGCCTGATCTCTCTTAGAGCTGGGACATGATTCCGGATACATAGATGTAGTTCGGACA-ATCCGTGCTAAACAGGCTCATTTTTATTGTTACTAC------------------------ATTGGTATCGTACGTCTGCCTGTATCGTAGGTGGATGATTCGAGAGAATCATCGTCAGGCTCAACT---------GAAATAGCTCGGAAAACACGCCACCGAATGTAGAAGTATTGGAAAACGTTCAGTAGCACCTTGCCAATTCTTGTGGACTGGAA
i cb4.chrX              I 955 C 0
s caeRem4.Crem_Contig24   546428 365 -  1162296 ACATAAGATGCACTATTAGATAGAAATATATGCCCAGGAATAGTTTCATCGGTTGTACCATAATTCATGAATTGGCGGTATACTTCTATGcaatttggtttttgaaatgcgGAACGGTCTCTCAGTGAGGTTGGACA---------ACACG-GGGTGTAAATGGAACAGGTGCGCACT----------ATTTTCTCTGTGACCACTAAAATTCTAAAACGTGGAAAGTTGTTGG--ACTTACTTCTTTCAGCTTCAAATGACGAGGAGAGCAATGAATCCGCGTCTGGGTCAATTGTAGAAGTGGAAACCACTCTGAACACACGCCATCTGATGTACAGAAACTCGCAGATGCTGAGGAAGAGTTTCATGATACGGGTGGTCTGGAA
i caeRem4.Crem_Contig24 C 0 I 8054
s caeSp111.Scaffold629   3541686 364 - 33334924 acaGAGGAAGCACTgttagagagaaaaatgtgtcCGGGAATAAAATCATCCATCGCTCCGTAGCTCATGAATTTCTTGTAAAGCTCAATACAAGTTGGCTTTTGAATAACAGCTCCGCCCCTCAACGATGTCGGGC----------ACACAGGCGGATACACAGAATTGGTGCGAACT----------ATTCTTCCtttgataaaaacaattagaGGTTAGAGTGGTTTGGGGGTTTTTTACTTCTGTTAGCTTCATAGTATGATGAATCGTGAGAGTCTTCTTCCTGGTCGAAATCAGAT---GACGTTGTTCTCATGACACGCCATCGGATATAGAAATACTCGAACACatgaagaaacattttgataATACGAGtcgtctgaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I

a score=971.000000
s ce10.chrX               784525 8 + 17718866 AGTAATAT
s cb4.chrX              21222780 8 - 21540570 TATAATTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3542050 8 - 33334924 aataatgt
i caeSp111.Scaffold629  C 0 I 3954
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=91.000000
s ce10.chrX               784533 1 + 17718866 A
s cb4.chrX              21222788 1 - 21540570 A
i cb4.chrX              C 0 I 7287
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e caeSp111.Scaffold629   3542058 3954 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=0.000000
s ce10.chrX               784534 4152 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      232818 6727 +   258924 I
e cb4.chrX              21222789 7287 - 21540570 I
e caeSp111.Scaffold629   3542058 3954 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=2061.000000
s ce10.chrX               788686 39 + 17718866 ATTGGAAATA-AAAACAACTGAATTCAAGAATTTTGGTTT
s caeJap4.Scaffold54      239545 40 +   258924 ACTGGAAAAACAAGACAACTGAAATCAGATATTTTGGTTT
i caeJap4.Scaffold54    I 6727 I 1995
e caePb3.Scfld02_62        79319 2215 +   783054 I
e cb4.chrX              21222789 7287 - 21540570 I
e caeSp111.Scaffold629   3542058 3954 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=0.000000
s ce10.chrX               788725 926 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21222789 7287 - 21540570 I
e caeSp111.Scaffold629   3542058 3954 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=660.000000
s ce10.chrX               789651 34 + 17718866 CACAATATTTTTCAGAACTTTCAAGCAGTAAATC
s cb4.chrX              21230076 25 - 21540570 CATCATATTCACcagaactttcaat---------
i cb4.chrX              I 7287 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeSp111.Scaffold629   3542058 3954 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=11190.000000
s ce10.chrX               789685 148 + 17718866 TTGATATTCCAGCTCGTATATTGGAACCTCCAGTACCTTTAAATGGGTGCATAAGAGCCACTCCAATCCTCAACCAACGCTTTGGACCACACTACAACCGAAGATTTACCCAACCAAATGGCGCACCTTATCCACTAAGACCCCATTC----
s cb4.chrX              21230101 142 - 21540570 ------tttcagaccgaTCGGACGAGcctccagaatctcaaaacggTTGTGCTCGAGTAACGCCAATACTTTCTCAAAGATTTGGATTACATTTTAATCGAAGGTTCACCATGCCGCACGGAGCTCCTTATCCGCTTCGCC----CTTCTCC
i cb4.chrX              C 0 I 127
s caeSp111.Scaffold629   3546012 148 - 33334924 TTAATTTTGTAGATCGTTCCACAGAACCGCCGATTTCTCAAAACGGCTGTTCTCGTGCAACTCCTATTCTTGCCCAGCGGTTTGGTATTCATTTCAACCGAAAGTTCTCACAGCCGAACGGAGCTCCATATCCATTGAGACCAAGCTT----
i caeSp111.Scaffold629  I 3954 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=337.000000
s ce10.chrX               789833 72 + 17718866 TGACA--------CGAGAAACGCCCACCGTGTATATCCAATTC-CAGTT----GAACCACCCCAGAGAGTTCATTCAATTCCGCC
s caeSp111.Scaffold629   3546160 84 - 33334924 GGACAGTCGCTATCAACAAATG-CAACCGGCTTCATCAGATACTCGGCTTAGAGAAGCGCCTTTGAGAACACAGTCAGTGCCACC
i caeSp111.Scaffold629  C 0 I 354
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21230243 127 - 21540570 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=0.000000
s ce10.chrX               789905 42 + 17718866 AGTCTATCATCGGCAAAAAAGATCATACGCTAGTAGTGTTCA
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21230243 127 - 21540570 I
e caeSp111.Scaffold629   3546244 354 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=-178.000000
s ce10.chrX               789947 132 + 17718866 GCAACAGAA-----------GCCACCACCAGTTCCTATAAAGCAACAAGTACCAGTACCATCAGTCCCTGTAATAGAGTCAATAGAGCAAATCCCTCTTCCACGGCCACAACGAGAACCCTTAATTCCTGAATCAAACCCAGC
s cb4.chrX              21230370 140 - 21540570 gcAACAGTACCGCCGCCTTTGCCGACACCACCTCCGCCACCTCCACCGCAATCAGTACCGCCGCAACCGCAACCAACCACATCAGAACAGA---CAGTTCCGCTCACATCAGAAGGTTCTTCAAACTGTTCAACAGCGCCACC
i cb4.chrX              I 127 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeSp111.Scaffold629   3546244 354 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=9156.000000
s ce10.chrX               790079 153 + 17718866 ---AGCATGGCA-----GGATGTGCATTCCAAAAGGGAGGAGAAAATAACAAATCAA----TTAATGGCGAAATCTATGGAACTCGACGAGTTCAAGAAAAAGTTCCCAGATGGAACGTCTATAAAGGAAATTCTGACTTCTGGATGGTACAAGGACAAGCTGAC
s cb4.chrX              21230510 159 - 21540570 GGCTGCCCGAAATCAGCAAGTACTCACCGGGAATG-AAGAAAGAGTGGATACGGCA-----CTTGCAGCGAAAACGATGGATATCGACGAGTTTAAGAAAAAGTTTCCTCACGGTACCTCCGTTCGTGATATTCTGACTTCGGGATGGTACAAGGATCAGGCAAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   3546598 153 - 33334924 ---AGCTTGGAA-----GAGTGTATATAATGAACGTGAGAAATTGTTAACACACCAAAAATCTGGT----AAAATGATGGAACttgaagaattaaaaacGAGTTTCTCTATGGGGACGTCGGTTAAGGACATCTTGTGTTCGGAATGGTACAGGGATCAGCTCAC
i caeSp111.Scaffold629  I 354 I 1195
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=281.000000
s ce10.chrX               790232 46 + 17718866 GGG---ACGCTTAATACAAGGCAAGGATCCTAATATGAATGTGAGTTTG
s cb4.chrX              21230669 49 - 21540570 TGGAAAATATTATATGGAAAACGAACCACCTCCTCGCAATGTGAGTTTG
i cb4.chrX              C 0 I 362
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeSp111.Scaffold629   3546751 1195 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=0.000000
s ce10.chrX               790278 618 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21230718 362 - 21540570 I
e caeSp111.Scaffold629   3546751 1195 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=2747.000000
s ce10.chrX               790896  94 + 17718866 TCTCAAAACTACTCTGGACCACGAAATGCACATCAGCATAATTTACTGCCTGTTAAAGT-------GAGTTGGTTCAAA-------ATTTAATTTTTTCAAGTTTGAA
s cb4.chrX              21231080 108 - 21540570 TCACAGAGTCACTCCATTCCGAGAAATGCCCAACAGCAGCATTTGCTACCTGTCAAGGTAAAACGCGAGCTAATTGAAGTCCTCACATTAAATAATTTCAAGATTCAA
i cb4.chrX              I 362 I 1270
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeSp111.Scaffold629   3546751 1195 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=0.000000
s ce10.chrX               790990 401 + 17718866 ATGCCACAATCTCAATATTTGCAGATTCAACAAATTCAGTCTCACTTTGTTCAAAATAATTTACCAAGTCCAGCACGAGGGGCTCAGGTCTCCAATGCTTTACCCTCTACATCTTCTTCGGAATCTTCTAAACTTACTGATGATATAAAACAAGAGCAAGCAATGATTTCAAAATCCAGCTTGGAACATCCGCGCCAACAATCGACCAGAGAATTCCTTATGCAAAACCAAATGGGCCAGAAAGCGCGTTCTCTTTGGAATCAAAAAACTTCCGGTCATTTTTCTGAAGAACCAACACCGCGACATCCTGTGACCCGTGTGAGCAAGTATGCCATGGCAGAATTTACAAGACATACACCAACAGGTAAAACTTCGACAAATTCTGAATTTATCAAACTGAG
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21231188 1270 - 21540570 I
e caeSp111.Scaffold629   3546751 1195 - 33334924 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=747.000000
s ce10.chrX               791391 31 + 17718866 ATAATACATATTCGTGTTGTAGGAACTCGCT
s caeSp111.Scaffold629   3547946 26 - 33334924 ATAATTCAT-----CATTCCAGGAAACCGCT
i caeSp111.Scaffold629  I 1195 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21231188 1270 - 21540570 I
e caeRem4.Crem_Contig24   546793 8054 -  1162296 I

a score=5243.000000
s ce10.chrX               791422 288 + 17718866 CAGCCACCCCAAACATTTTACGCAAAAACCGAAACACAGATGGCTGCCCTTCTCCTATGGGACTTATAGATCACGCATTATTTGGATCATCAATGCCACCGACAGTTCAGTCACTGAATAAACTGACTGGAGCAAGAAGTACACCCGATACGCCGAAGCAATTGAAACCAGAAGAGCCAGTGAGTTTTATGGGTCTTTGaaaaaaattaatttttaatttaaGGCTTCGGAAACTCCACGAAAACGACAACGAAAACAAATTTTGGTTTCTGATCACCATTATCAATC
s caeRem4.Crem_Contig24   554847 226 -  1162296 CAGTCACCCCAAACATTCTTCGTAAACCCCGAGGCAATGAAGTTAACACCTCTTCAAATCGACTTGCCGACCATCCGTTGTATGGGTCTACAATTCCCCCGTCTGTACAGTCATTGTCAGGACTAGCTC--------------------------AACCACCTG-TTCCAGCAGA-----------------------GCAACAACCAGCTCCTTCA------GCTCCAAACACTCCACGGcg------aagaaaacaaattttaatttctgacGACCATCATCAGTC
i caeRem4.Crem_Contig24 I 8054 I 1078
s caeSp111.Scaffold629   3547972 235 - 33334924 CTGGCACACCTAACATTCTCCGCAAGTTCCGTGGCAACGAAGGATGTTCCTCGCCAGcctattcagaaaaaggttTATTGCATTCATCAACGTCATCTCCATC--AAAAATACATCTGACGAATAACTTG------------------------GAAGCGGTTG-AATCTGCACAATCC--------------TATTTGCAACCACAAACC------------ACACCAGAAACaccaagaagaagagaaagaaaacaaaaattggtGTCAGATCATCACTATCAGTC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21231188 1270 - 21540570 I

a score=2420.000000
s ce10.chrX               791710 181 + 17718866 ATCACATCTTTACTCACTTCTACAAGACGACCCCGTTAAGCATGAACCGCCTTCAGAGAAAGAAGAAGAAC-AATCAAGAAGTAG-----TTCAAACATTGTGCATTCAGCAAGCCAGGAAAATACAA---AATTTGATGAGGATATTGTG----------------AAAGTAGAAGCTCCAGAACATAATCAGTAAGTTTCTTGG
s caeSp111.Scaffold629   3548207 190 - 33334924 TTCGCAGctttattctcttcttcaagaCGATC------------AAAAAcctgaagagaagaaaaaagagccaGGCAGAGAGTTGACGTATTTTATGAATATGGAT--AGCCAGCCTGAAACATCCAATGAGACTGGATC--GATAATGTGGGGAGAGGcggaaatcaaaattgagaTTCCAGAGGAGAAATAGTAAGTTGCTTCC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21231188 1270 - 21540570 I
e caeRem4.Crem_Contig24   555073 1078 -  1162296 I

a score=6347.000000
s ce10.chrX               791891 82 + 17718866 ---AACTTTGAAGCTTCCAAAACAAAGT-GTTTGCAGCACACCACCACCAGTCAAAAAAACTCGAGGACGGCCTCGCAAAGATCGA
s cb4.chrX              21232458 77 - 21540570 ---aacTCTTAAATTT---AATCAAATTTGTTTCCAGCCCTTCACCACC---CAAAAAAGTCAGAGGAAGGCCTCGCAAAAATCAA
i cb4.chrX              I 1270 I 260
s caeSp111.Scaffold629   3548397 75 - 33334924 ATgagtgaaaaaattc---atttaaatt--tttccagcACACCACCGCA---AAAGAAA---CGTGGAAGACCTCGCAAAGATCGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeRem4.Crem_Contig24   555073 1078 -  1162296 I

a score=-640.000000
s ce10.chrX               791973 100 + 17718866 ------------TCACAAGAGCC------AACGGCAGTACC---TAAGCATATGCAGAGAATGCGGAAACCGAAAAGTAAGTG-CTTGAGAGTGTTGTGCCACCTGCATGTTGCTAAATATG
s caeSp111.Scaffold629   3548472 101 - 33334924 GTGGCAAACGTTCCTCAACAACCGCGGAAAACGAAAGGGCCCTATAAACCAAGGCAACCCAAGCAG---CCTAAACGTAAGTGACATGACAGTATTgt------------------aaactc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21232535 260 - 21540570 I
e caeRem4.Crem_Contig24   555073 1078 -  1162296 I

a score=6328.000000
s ce10.chrX               792073 485 + 17718866  
s cb4.chrX              21232795 566 - 21540570  
i cb4.chrX              I 260 I 3
s caeSp111.Scaffold629   3548573 672 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeRem4.Crem_Contig24   555073 1078 -  1162296 I

a score=14517.000000
s ce10.chrX               792558 103 + 17718866 ---CTTTGATAACCCGTCCAAAATTGTTGTTGCTCCAATTTGGACGGACGACACTGGTCCGTTGATGCCTATTTCAAT-GTATCGGACGGATAAAAAAATTGAGAGA
s cb4.chrX              21233364 103 - 21540570 ---CTATGAGTACCCACCGAAATTTGTTGCTGCTCCAGTTTGGACTGATGATACGGGACCGTTAGTACCTATTTTCAt-gtatcaaaatgacaaaaagaTTGAACGA
i cb4.chrX              I 3 I 1194
s caeRem4.Crem_Contig24   556151 103 -  1162296 ---CTATGAGAACCCAGTAACTATTGGTCATGCGCCTATTTGGACAGACAATTCTGGACCTTTACTTCC-ATATGAATGGTATCGGGATGGCCCGAAAATCAAACGG
i caeRem4.Crem_Contig24 I 1078 C 0
s caeSp111.Scaffold629   3549245  97 - 33334924 CTTTTATGAAAAGACACCACAGATTGAAGCCGCTCATGTTTGGACGGATGATAGTGGACCTCTTGTTCCTCAATCCAT-GTACcagaaagttgaaaaa---------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I

a score=-566.000000
s ce10.chrX               792661 11 + 17718866 AAGTTGATGCT-
s caeRem4.Crem_Contig24   556254 11 -  1162296 -AGGCAAATGTT
i caeRem4.Crem_Contig24 C 0 I 1409
s caeSp111.Scaffold629   3549342 10 - 33334924 -aatcgattct-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21233467 1194 - 21540570 I

a score=-4329.000000
s ce10.chrX               792672 486 + 17718866  
s caeSp111.Scaffold629   3549352 495 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21233467 1194 - 21540570 I
e caeRem4.Crem_Contig24   556265 1409 -  1162296 I

a score=3763.000000
s ce10.chrX               793158 249 + 17718866 CAGAAA-AATCAATGAACACTTCGACAGCCTAGTGATAAACTGTGTCACTGCCCACTTCGATGAACAACCCGACGCCATAACTTCTCACCAAC--ACAATTCAATAGTGA-------CCGAGTTTCCAATT-------GACTGGGAGAGCACTGACACCGGATGCAGATGGTTTCCATGGCACGAACGGATTGTTAACAATTGTGCGAAGGATGCTGCTTCTGATATGGTTGACTCTAAAATCAATGAAATCAATAGCGTAATCGC
s caeRem4.Crem_Contig24   557674 246 -  1162296 CAGAAGACATCAATAGacaaatgaataattttgttcaaaattgtgCCACTGCTGCATTCAAATATGGTCGAAACG-TATTGCTCTGC-CGAACTGGAGAATCTACTGTGA-------CTGAATTTGCATTT--GATTCAAC-----AAGTTTGGATTCTGGGCCCAGATGGTGCTCGTGGCATGAAGCCTTGGTCAATTCATGTGTGAAAAACGTCACGAGCAAGTTGGTTGCTAATAAAATGAAGGAATTGCGTGGATTGG----
i caeRem4.Crem_Contig24 I 1409 C 0
s caeSp111.Scaffold629   3549847 252 - 33334924 CAGAAT-CATCAACGGCAAGTTTGATCAGCTAGTCCAAACTTGCGTTAGCGCTGTCTTCGAAGAAG-----------ATGGCCCCTC-CCATCT-AATAACTCATTCCAAGGAACAGCCGGCTTTTCGTCTCAAAATCAACTGGAAAAGTAGAGACTCGGAACCGAGATGGCTACTCTGGCATGAAACCCATGTTACTAACTGTGTGAAGCATGTCAAAAAAGCTATGGTGAAGCAGAAAATGGCGGAGGTTGATAAAATGACAAC
i caeSp111.Scaffold629  C 0 I 74
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21233467 1194 - 21540570 I

a score=-674.000000
s ce10.chrX               793407 74 + 17718866 ATATGTGGACCCGATGATTAATG----GCGTGACTGATCTGGATGTGAAGGAAGAGCTGTCCGATTTGGCGTTTTTGA
s caeRem4.Crem_Contig24   557920 78 -  1162296 TTAAACCGGCTTGGCGGTGGTTGAAACGTATCAAAGATCCAAGTTGTAAGAAAGAAGCATCGGAATACGGAAAGCAGA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21233467 1194 - 21540570 I
e caeSp111.Scaffold629   3550099 74 - 33334924 I

a score=-1074.000000
s ce10.chrX               793481 298 + 17718866 TCAGAACAATGTAT-GACAACTT-GGATTCTAAACTACAAAATCATGTGCGGTATGGCCAAGTTTCTCTGCCAAAAACGTTTGAGCTCAAACTGAAGAGCATTGAGCAGAGGCTTGGACAATGGACGAGTGTTAAGGAAAAATTTCGATCGAAAAATGTGGATGCGAGCATTTCCA----AA--TGGAAAGTTGCAATGAACAATTACATTGCTGCCA------CAATGG----------ATCGGGAGATGAAAAA--------GCAATGTTTAATGGACAGCTATTTAAAACTCAAGAAATCCATACAATGTTTTGACGCAATTGTAGA
s caeRem4.Crem_Contig24   557998 303 -  1162296 TTCGAAGCATCTAT-GACACCTTAGAGTACAAAATGGATGAATTT--AAGAAATTTGTCAGCTTCAACTCCACAGAACATTTGAATTTAAGTATAGAGCGATTAAACAACGAGCCGAAAAGTGGATTGCAGTTAAAAATAACTACAGAGAAGTTGAGCTGGA-GAGAGAAAttaca----aatttgaaaag-------------------agcGGCGGTCGATTTTATTGGAGCACCGCAACGTGGACGCCAGAACAGGCTTTGGCCACGATTGAAAAAACTCTGCAactctcttttccatttgATTCAAACGCATGATGCCGTGGTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3550173 304 - 33334924 TTGAACAAATCCATGGAAATCTT--CTCTCAAAACTGAAcagtttcaaagaaagttttcgaattccGATTGGAAAAGCCTTCAAACACAAACTGAAAGCTATCGAAGATAGACTTGCCAGATggatttcaattaaaaacaagTACCGACAAACCAAAGTGGA------AAATTTCACGTTAGCTTGGAAAGCTGCTACGGACAACTACACGGCTGCCGTGGATTCTGCTG----------ACAAAGAAGTTAAAAT--GCTT--ATCATGCT----AAGAAGTTACCAAAATCTTACCGATGCACTTGAAATGAATGACGCTCTAGTGGA
i caeSp111.Scaffold629  I 74 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21233467 1194 - 21540570 I

a score=16101.000000
s ce10.chrX               793779 303 + 17718866 TATAACAATGTTCGCGTCTCGGCTTCAAGTCCTATATTACCACGCC---------TGTCGGGTTTACAGAAGTCCATTGAACTTGCTGGAAGTTCAAAACATTATGAGATCAGTGGAGGATACTGAGTACTTGTTGCTCCTCGCAGAGGTGAAGGTGAAGCTTTTTGAGGAGATTGACGTAAATCCTCGAGTTCGAGAACAGTTACGACCAAAAATTGATTTAATTGATTTATATATGGCGGCGGATTCCATGAATGTTGCTAAAGGAAGACTTAGAAGGCTTCTGCGTTTGAATACTGACGATGGCTCAAT
s cb4.chrX              21234661 278 - 21540570 TGTTTGCATGTTTGTTGCAAGGCTGCAAGTTCTCTATTACCACGCTTGTCAGTTGCACGAGAATTTTGACAAGGAAACAAAAGAACTGAAA------GAAGTTTATCTGTCGATAGAGGATACGGAACATTTGTTGATCTTAAGTGAAGCCAAGGTGAAACTGTT--GAGCGAATGTCGTAAA----CAATC------------------GAGAATCGACTTGATCACTACCTATATAGAAGGAGATGCCATGAACGTGGAAAAAGACAGACTCAAACGATTACAAGAATCTGATG----CAGATGCTGAAT
i cb4.chrX              I 1194 I 2193
s caeRem4.Crem_Contig24   558301 269 -  1162296 CGTTTGTATGTTTGCGTCTCGACTCCAAGCACTCTACTATCATGCT---------CACGAAGTATTCAAGGACAAAGTTGACGTCCCGGAAACCCACAAAGTTTTGCAATCTTTAGAGGATACTGAGCATCTCTTCATCTTGGCCGAAACCAaggttcttcttct----tcaaatg--gGAAA----TAAATC------TGG--------GAGAATTCAGTTGATAGACGCTTATATCCAAGGAGACGCTTTCAACGTGGAAAAAGGCAGATTAAGAAGATTA-------ATGATGT---CAAAGGCTCACC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3550477 279 - 33334924 TGTGTGCATGATTGCTTCAAGACTTCAAGTACTTTATTTTCATGCA---------TTCGGAGTTTTCAAGCAAATGGTTGATGTTGTGGAATCTCGAATCGTTGTTCAATGTCTTGAAGACACCGAGCAATTTCTAGTTCTGGCTGAATCGAAAGTAAAGCTGTT----------G--GAAGA----CAAGGCGGAGATTGA--------TAAGCTGAACATGATCAATCTGTACATGCAAGCTGACAAGATGAATGTGGAACGAGGTCGATTGAGACGCATGCTATCCGTCAATGCGGATAAAGCATTATT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I

a score=-1617.000000
s ce10.chrX               794082 15 + 17718866 CAAAGCATGCGAGAA-----------
s caeRem4.Crem_Contig24   558570 12 -  1162296 ---CTCAAGTCAGAA-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold629   3550756 15 - 33334924 -----------AGAAAGATGCGAAGA
i caeSp111.Scaffold629  C 0 N 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I

a score=2989.000000
s ce10.chrX               794097 367 + 17718866 TGATCTATGTTGGAAAGTTGACAAATTTAAGGACAAGTGC------AAGGATTGTGATAT----------TCCAGAAATAAT-----TTCTCTGCTGCCTTCAAAAAGTTGGCCCCAGGTGATCATAGAAGAAGAATCTGCAAGAGCGACAGGGGAATACCCGGAA-----CGAACAAAC-----TTGTTTTTAGAAACTGAAGATTTTGACTTTGACTATTCACTTGAACTTCCAGTAAGACTGTTTGCAAACAGCACACTTGGAGGAACATTATCTCAAATGTGTATCAGTCTACCGCAGCTCACAAGTATTGTGGATGAAAA---GTTGAGAGAGCGAGCGGAAAAAGAAAAGGAAGAGCCCAAAAATATCATTCAATCTGTAATTCCATTATACCGA
s caeRem4.Crem_Contig24   558582 380 -  1162296 AGAAGTGCGCAGAAAAGATG--AAGATCAAAAAGGAACTTTTCGTAAAAAGTTGTGATGTTCTtgga---ttaaaaaatattgtcaGCAATTTCCCATCTGG---AAACTGGGAAACAGTAAtcaggaaagaag-------aagatcgCTGgaggaaaactgagaaac---cTGGAAGACgcaatttcttcgaaaaatctcaGCTAAAAAACTTTGACTACGCACTCGCAATTCCACCAGtttttttATCAGAGACTGCTGGAAACCATACATTGACACAGATGTTTATGACGTTGCCACAAATGACCAGTCTAGTGGATGAGAA---GTTCAAATCTATTGCGGACGCTGACAAACGAGAACCAAAAATGTACATTCAAGCGATAGTCCCACTCTTCCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     89007 365 -   118955 ------------TGAAGCAT--CGGGTTAATAA------CTTCGT-CAGCGCATTGGTAGACATGGATCTTTTGGAAATAGC-----TAGTTTTCTACCTAGCAAAAAGTGGTCGGAAGTTGTGGTTGATGAGG-------AAAAACAGTGGGGTGAATCCCAGAAATTCACTACCAGATTGCATCTTTTCCATGGATCCCAAGATGAAAATTATGATTATTCTAAGGAAACGGTTCCAAAACTCTTCGCAAGAAGAACGTGCAAACCTATTATCACTCAGATGTTAGTTGCATTCCCCCAAGTCACCAACATTATTGACGAAAAACTGTTGGAA---AGAgctgaagaggaaaaagcaGAGccgaaacttcttcttcaatccATTCTCCCACTGTTCAAA
i caeSp111.Scaffold412  N 0 I 111
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I

a score=-958.000000
s ce10.chrX               794464 102 + 17718866 CAACA-CTCAAAGTTTTATGAGAAGAGATGCCAAATTTTGATTGAAGC---CAGAA---AACAAGCCAATATGCGAAAAGCTGAGCATT--CTACTCATTTTAACTCCAAT
s caeRem4.Crem_Contig24   558962 105 -  1162296 ATGCAGCCCAAAGGCTTTC------AGATCCCACATTTTATGCTAAGCACTCGGAAACGACCACACAAAAACGAGGAAGTGCAGGAATTGCCAAAGTCTTTTGAACAAGAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I
e caeSp111.Scaffold412     89372 111 -   118955 I

a score=3224.000000
s ce10.chrX               794566 127 + 17718866 GATCAGAAGCTGGTGAA-----------TTCCATTCAGCGGGATGTTAAAATGTACGGGAGCGT------AGTTTCTGGAGACCAGCTCTTAGATTATAAACCTGGAAGAGATGACGAAAAACAACTAGATGTGGAGATACAAA
s caeRem4.Crem_Contig24   559067 133 -  1162296 GACCAAGAGTTGTTAAAGAGATATCGCCATCAATTAG---------CAACTTCC--GGAACAGTCGCTTCAGAGAATGGGGAAAATTGTGTACCATCCAATCGTGGCAAACATGATGAGAAACAACTGGACGAGGAAACTCTaa
i caeRem4.Crem_Contig24 C 0 I 1717
s caeSp111.Scaffold412     89483 127 -   118955 gatttgaagtttttgaa-----------ctcaatcagaagaaatgtCAAGTTACTGGGTGCAGT------GGTAACCGGTGATGATCTGGTTGAATACAACCCAGCTGATCATGATGAGCAACAATTGAATGTGGTAATTCAAA
i caeSp111.Scaffold412  I 111 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I

a score=1117.000000
s ce10.chrX               794693 60 + 17718866 ACAAGAT--ACGACTTTTTCGTGAACAAAAGCGGGCTGAAGCGTTGGAGAGAGATCGACTAA
s caeSp111.Scaffold412     89610 60 -   118955 ACAAGATGAACGAGTttagaacaagaaaaagggaac--aagctttgaaaagaagaagattga
i caeSp111.Scaffold412  C 0 I 1022
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I
e caeRem4.Crem_Contig24   559200 1717 -  1162296 I

a score=0.000000
s ce10.chrX               794753 1399 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I
e caeSp111.Scaffold412     89670 1022 -   118955 I
e caeRem4.Crem_Contig24   559200 1717 -  1162296 I

a score=503.000000
s ce10.chrX               796152 25 + 17718866 CGATCCGTTTCGATTACACATAAAA
s caeRem4.Crem_Contig24   560917 15 -  1162296 CGATCcgtttccatt----------
i caeRem4.Crem_Contig24 I 1717 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I
e caeSp111.Scaffold412     89670 1022 -   118955 I

a score=471.000000
s ce10.chrX               796177 31 + 17718866 CCTCGTCTCA-TTTC---TTGTAAAACATTCAGAA
s caeRem4.Crem_Contig24   560932 27 -  1162296 --tcatttcatcttcACTTTGTAAGACAA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     90692 34 -   118955 CTCCATTTCA-CTTCTCTATgtgaaaaagcaaaac
i caeSp111.Scaffold412  I 1022 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21234939 2193 - 21540570 I

a score=32864.000000
s ce10.chrX               796208 140 + 17718866 AAAATCGAACAAACACACATCAAACAACACATTATTTGCCAG-CTTACCACTTGTATCTTCCATCTCCTCCT---CGGGGATAGCAAAAAT---CCTCTTCAAA---CCGACGGAATTATCAGCTT-TGCAAAAATGGACACTTGAGGTTC
s cb4.chrX              21237132 144 - 21540570 AAAATCAAACAAACACATATTCAAGAGCACATTATTTGCCAG-GTTAGCACttgtatcttctttttttcaatatacgGACAAGATAAATCTTTCCCTCTTCAAC---ACAC-AAAATTATCAGGTT--GCaaaaaaaGACACTTGACTTTC
i cb4.chrX              I 2193 I 1191
s caeRem4.Crem_Contig24   560959 147 -  1162296 AAAATCGAACAAACATACATCAAACAACACATTATTTGCCAGCTTTACCACTtgtatcttttctttttccccatCCCGGCCTAGCGAAAAT---CCTCTTCAAACGGACGA-AGAATTATCAgctttggaaaaaatggacaCTTGAGACTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     90726 130 -   118955 gCAATCGAACAAACATACATCAAACAACACATTATTTGCCGGCTTTACCACTTGTATCATCTCGGGGTCCGC-----GGCCAAGTCGAAAT---CCTCTTCAAA---CCGCTGGAATTATCAGCTT----------GGACACTTGAAACGC
i caeSp111.Scaffold412  C 0 I 2
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I

a score=273.000000
s ce10.chrX               796348 1 + 17718866 T
s caeRem4.Crem_Contig24   561106 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 2440
s caeSp111.Scaffold412     90858 1 -   118955 T
i caeSp111.Scaffold412  I 2 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I

a score=825.000000
s ce10.chrX               796349 68 + 17718866 TCTTTTTTGCCAAAGAAGTGCACGTAGATGGGTATTTTCAGTGAA----------ATGCAGACTTTGTCGATTTGTGA
s caeSp111.Scaffold412     90859 76 -   118955 TCTTATTTGGCAGAAGACAAGACAAAATTGGTTAGAGTAAGCGAAGGAGGGGCTTATgcaaaaattg--gatttttga
i caeSp111.Scaffold412  C 0 I 1114
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I
e caeRem4.Crem_Contig24   561107 2440 -  1162296 I

a score=0.000000
s ce10.chrX               796417 3093 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I
e caeSp111.Scaffold412     90935 1114 -   118955 I
e caeRem4.Crem_Contig24   561107 2440 -  1162296 I

a score=8809.000000
s ce10.chrX               799510 442 + 17718866 TTCAGAGATTTTGATTTCAAATTCTAAATTTTCC-------CACTTGTTAGGCAACAGCTGCTCCTTTCTTTCCCCCTATCCCGTGGCTCTTGTGAGCACATAACATAGATTTTTCAAACTAAGGAGAGCAGAAAAAAAAATTAAAGTGCAATGTAACACACATTGTCTCATTTTTGTTGTCAAATTTGACAATAGATGAGGAGAAAACCGTA---AGAAAATTGAAAT------------------------TCGAGACGATTCTCGAAACCCCCTCTCGAACTTTGTCTTTGTGTGTTTTCT-TCTCATTCATAACCCCCCCCCCCCCCCCCACTCTCTACCCAACGATATTTGATTTTTCTTGTCCTCTATATTCTCTTTCGAACTTGGAAAGACACAGATTTCACTTCACTTTATGTCAATACTGGGTCCGCATTTGTATTGTTCTGAAATATTTT-TAATGTGTTTCAATTTT
s caeSp111.Scaffold412     92049 381 -   118955 TTCCAAGATTGTGATTTTAAATTCTACTCCTTTCATTCCAACATTTGTTAGACAACAGCTGCTCTTCCACTCTTCTCCATTCATCAGT---------CACAGAACACAA--------------------CAAGTAAAGGAATAAAAGTGCAATATAAAACACCCT----------------CAGActcaataaaaaa-----gacaaaCCGTATCTAGTAATTTGatatcctttttcttcattttttttcttctcaaacctcttctctt--cctcctctcgAACTT-------GTGTGTTTTCCACCTCATTCATAACCT------------------TTTCCTCAACggtatttgatttttcgtgtccctttttctctatt---------gaAAGACACAGATTTCACCTCACCTTGTGTCAATAC-----------ACATATTgttctccaattttttctaataagTTCCAGTGTT
i caeSp111.Scaffold412  I 1114 I 479
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I
e caeRem4.Crem_Contig24   561107 2440 -  1162296 I

a score=0.000000
s ce10.chrX               799952 2597 + 17718866  
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I
e caeSp111.Scaffold412     92430  479 -   118955 I
e caeRem4.Crem_Contig24   561107 2440 -  1162296 I

a score=2748.000000
s ce10.chrX               802549 201 + 17718866 GGTCAATGTTATGGTGAACTTGGTCAGTGCTCAAT---TTTTTCATTATTCTTCCAAATTTATTACCATTAGAACATCCCAGATGTTTTCAATTTTTCTCGCGAAGCCGAAGCCAAAATATTGTTTGCGGTGTTCTCTTCTCGTCTTTGATTAAGCCATTATGTGAAAATAAGAACACAGA-----AATCTCTTCTTCGTATCATTCTG
s caeRem4.Crem_Contig24   563547 179 -  1162296 GGTCAGTGTAAGAG-AAGTTTTGTCAGTGCACcatacttttttcattatttttt----ttcgatttcataaGA-----CCAGACGTTTCTAATTC-----------CCACAATTGAAATGTGG-----GGTGTTCATTT----TCTTCGATTAAACCATTATGTGGAAACTTCACTTTATATTGTTAATCCTCCGCTTTTTTCAATACG
i caeRem4.Crem_Contig24 I 2440 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e cb4.chrX              21237276 1191 - 21540570 I
e caeSp111.Scaffold412     92430 479 -   118955 I

a score=-2461.000000
s ce10.chrX               802750 58 + 17718866 TTATTCCCTA---TCGAATT---CGTTTTTTTTTTCAGA------------ACACATTTTCA---ATGAGTGTTGGAAC---------
s cb4.chrX              21238467 80 - 21540570 ttgttccccagctttcgatt-----tttcctttttctgcatttttcgtGTTACAGGTTTTGAACAATGAGCgttgcgaa---atttca
i cb4.chrX              I 1191 C 0
s caeRem4.Crem_Contig24   563726 88 -  1162296 TTCgttaaaagtttttaattaaaaGTTCTCTATTACAGAATTCCTAAATTAACCATTTTGCAAACATGAATGATATCAATGcgatcaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I
e caeSp111.Scaffold412     92430 479 -   118955 I

a score=4209.000000
s ce10.chrX               802808 31 + 17718866 AAATTTTGACTGGGATTTTCCCGATTTTCCG
s cb4.chrX              21238547 23 - 21540570 aaactttgattggGACCTAAGCA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   563814 23 -  1162296 aaaattcgaatggGATTTTCAAA--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     92909 23 -   118955 AAAGTTCGAATGGGACTTTCAAA--------
i caeSp111.Scaffold412  I 479 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I
e caeJap4.Scaffold54      239585 1995 +   258924 I

a score=10612.000000
s ce10.chrX               802839 95 + 17718866 CTGGGTAATTATTCATCTTCAGATTTTCCAATAGAAAAACTAAGACATGGCGATGATGAGGTAACGGAATTTTT----TTTTAATTTTC-----TAGCACTCTT-
s cb4.chrX              21238570 86 - 21540570 -TTGCTAATCTTTCGTCTTCTGACTTCCCAATTGAACAATTCCGACACAGCAATGATGAGgt------atattt----ttctaataa-------taaaaattta-
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24   563837 97 -  1162296 -TGTCCAATTTCTCGTCATCAGATTTTCCCATCGAGCAGTTCCGACACAGCAATGATGAGGT------TTACTCAGCACTCAAATAAACCAACgcggaaatttc-
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold412     92932 89 -   118955 -TGGCCAAT------TCGTCAGATTTTCTTATAGATCAGTTTCGACATGGCGATGATGAAGT----GAGTAGTTAGCTCCTTTATAATCT----TATAGATTTT-
i caeSp111.Scaffold412  C 0 I 25
s caeJap4.Scaffold54      241580 89 +   258924 CTGGAGAACTTAACATTACTCGACTTTCCATTAATAAATGTCAGACAAGGAGATGATGAGGT-------TGTTG----TTcatgaaatt-----taaaataatta
i caeJap4.Scaffold54    I 1995 C 0
e caePb3.Scfld02_62        79319 2215 +   783054 I

a score=126728.000000
s ce10.chrX               802934 260 + 17718866 TGTTTTTCAGACTAACTTTGAAACTATTGTTGGTATCGCAGTTGTGTTCTCTGCAGCAACTGGAATTTTTGCAAACTTTTTGGTGATTCTTCTATCATTCGGTCATGTGCAGGGAGATTTTCGGTTTTTCGTCGCAAACCTCGCTTTAGTGGACATACTTTGTGGTTCTGTATTTATGTTTATGGGATATATTAATGTGAATGATGATCATCATATTCCTAGCCAGTGAG----------------------------------------------------------------------------TTGATAAGTTTGTG----------------AAAACA-----------------------------------------------------------------------------------TTTCCAAATT
s cb4.chrX              21238664 247 - 21540570 tttttttcagaatgaatttGAAACAATTGTGGGAATCGCAGTGATTTTCTCTGCGGTCACTGGAATATTCACAAATCTATTAGTGATATTGTTGTCATTCGGTCATGTTCATGGTGACTTTCGTTTCTTTGTGGCAAACCTTGCAGTTGTGGATATTTTATGTGGATCTGTTTTTATGTTCATGGGCTATATAAATGTAAATGATGATCATCATATCCCCAGCCAGTAAG----------------------------------------------------------------------------TT-----------------------------ATACA-----------------------------------------------------------------------------------CTCAATTAGC
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig24   563938 242 -  1162296 ----tttcagaatgaattcGAGACGATTGTGGGCATCGCAGTTGTTTTCTCCGCAGCAACAGGGATTTTTGCCAATTTCCTAGTTATTATCTTGTCTTTTGGCCATGTAAAGGgagattttcgatttttcgttgCAAACCTTGCACTGGTGGACATTCTCTGTGGCTCAGTATTCATGTTCATGGGGTATATAAATGTGAACGATGACCATCACATTCCCAGTCAGTAAG-----------------------------------------------------------------------------T-----------------------------AGACT-----------------------------------------------------------------------------------TTCAGATGGT
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold412     93046 232 -   118955 ttaattttagaatgAGTTCGAGTTCATAGTTGGTTTGGCAGTGGTTTTCTCTGCGGCAACAGGAATTTTTGCAAACTTTCTGGTGATTCTTTTATCACTAGGCCACGTTCAAGGagatttccgattttttgttGCAAATCTTGCCCTTGTGGATATTCTCTGTGGTTCAGTTTTCATGTTCATGGGATATATCAATGTAAACGATGATCATCATATCCCAAGCCAGTGAG----------------------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold412  I 25 C 0
s caePb3.Scfld02_62        81534 258 +   783054 TGCATTTTAGAACGGCTTCGATACCATTGTCGGATTATTTGTGATCTTCTTCGCAGCAACTGGAATTTTCGCCAACTCGCTTGTAATTATATTGTCCCTGGGTCATGTACAAGgagatttccgttttttcgttGCGAATCTCGCGTTCATGGATGTTCTATGCGGATCAGTTTTCATGTTTATGGGTTATATCAATGTTAACAACCATCATAATATACCCAGCAAGTGAG----------------------------------------------------------------------------TT--TTCGTTTCGA----------------GACACG-----------------------------------------------------------------------------------TTTACACATC
i caePb3.Scfld02_62     I 2215 C 0
s caeJap4.Scaffold54      241669 433 +   258924 taatTGACAGAAAGAATTCGAAACAATTGTTGGTATAATCGTTGTATTTTTATCATTCGTTGGAATTTGTGCAAATTTTACGGTCATTTTGCTATCATTTGGTCATATTCGCGGGGACTACCGATTATTTGTGGCCAACTTGGCTTTTGTCGATATTCTTTGTGGATTTGTGTTCATGTTTATGGGTTATATTAACGCTAATGAGGATCACTGTATTTCGAGCCAGTAAGAATTACATATATTGTCCACGaagtgctggccggaacgttattggcaacgcgctccgctgggtCGGGTGGTTGCTTGTT--TGCGTCTCTTTAGCGAGTCTCGTTACAAAACAACAGTGAACTCACACTCTGCGACTCCTTTTCgaatcagtttaacgcagatgagtggctgcgcagctaaatgcccccgatttggtttccaaatt
i caeJap4.Scaffold54    C 0 I 111

a score=-5657.000000
s ce10.chrX               803194 10 + 17718866 TGGTGTGTAC------
s cb4.chrX              21238911 10 - 21540570 AGAGTTTTAT------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   564180  6 -  1162296 GGA----TAT------
i caeRem4.Crem_Contig24 C 0 I 20
s caeSp111.Scaffold412     93278  3 -   118955 -------TGT------
i caeSp111.Scaffold412  C 0 I 32
s caePb3.Scfld02_62        81792 10 +   783054 GACTTCGTGC------
i caePb3.Scfld02_62     C 0 I 280
s caeJap4.Scaffold54      242213 10 +   258924 ------TTGCTTTTTT
i caeJap4.Scaffold54    I 111 C 0

a score=209388.000000
s ce10.chrX               803204 567 + 17718866  
s cb4.chrX              21238930 625 - 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24   564206 645 -  1162296  
i caeRem4.Crem_Contig24 I 20 C 0
s caeSp111.Scaffold412     93313 662 -   118955  
i caeSp111.Scaffold412  I 32 C 0
s caePb3.Scfld02_62        82082 574 +   783054  
i caePb3.Scfld02_62     I 280 C 0
s caeJap4.Scaffold54      242223 744 +   258924  
i caeJap4.Scaffold54    C 0 I 760

a score=-13128.000000
s ce10.chrX               803771 67 + 17718866 GTTGACACCGTCTTTAA--AAACTAAGTCGGTTTATGTTATACAAAATTACTTTTTCATGAAGTTCAAC
s cb4.chrX              21239555 26 - 21540570 ---------------AG--AA------------AACATAATAATAACTCAT--------------GAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   564851 29 -  1162296 -------------TTAG--AA------------TAcctgattttaattttt-------------cgaac
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     93975 27 -   118955 TTTA---------TCAGccaa----------------aaatagagaatttt-----------------g
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        82656 25 +   783054 att----------tcag--aa----------------tgattgACACTTTG----------------AA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold54      242967 760 +   258924 I

a score=158792.000000
s ce10.chrX               803838 307 + 17718866 AT---TTCTCTTACAGGTTCCCGCTTTTCTGACACTGAGTTCAGTGCTACTACTCTCGGAGCCAATAACCAACGGCCATGTGATTATAACAACACAACTCTGGCTTGCGTTAAGCCCATTTCTAGACGCGGTGATTACAATTATAGTCATTAAGCAATATAGGTG--------------AA-------------TTTGTA-------------------TGGTCTGAAACAG---------TTTTATTATAAACTTCATATTACAGGAAAAACTGTCTCACTTGTGCATCTACCATGGGTAAACGGATTTGGAAGCCTAAAAATACAGATGCTCTATACACAGAGGAAAAAGAAGCTTTCGAAAC
s cb4.chrX              21239581 299 - 21540570 AT---ATGTTTTGAAGGTTCCCGCATTCTTGACTCTCAGCTCTGTTCTGCTGCTTTCCGAGCCGTTAACAAACGGCCATGTCATTATCATAACTCAACTATGGTTGGCCTTGAGTCCATTTCTAGATGCAGTGATTACTATAATTGTTATCAAGCAGTataggtt--------------tgaaaaaaaaattattttgc--------------------tGACATGTAActg--------------------------ttt---agaaaaaattggcttacATGTGCATCAACAGTTGGAAAACGAATTTGGAAGCCAAAAAACAACGACGTATTGaacagtgaagaaaaaaaagtattagaAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   564880 307 -  1162296 atGTCGTGCATTTTAGGTACCCGCATTTCTGACTCTCAGTTCAGTGCTCTTGCTCTCCGAACCCATTACTAATGGTAATGTTATCATTATTACACAACTCTGGCTGGCTTTAAGCCCATTCCTGGATGCAGTCATTACTATTATCGTAATCAAACAGTACAGGTA--------------TG-------------TTTTT--------------------GGATGTGTATTCAGTAGAATCAAggttttat--------ttt---agaaaaaattgtctgaCGTGCGCCTCAACAATGGGAAAACGAATCTGGAAACCGAAAAACACTGATGCTTTGTATAGTGAGGAGAAAGAAGCATTTGAAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     94002 304 -   118955 tt---ttgtttt-caggttcCCGCCTTCTTGACACTTAGTTCTGTGCTTTTGCTATCTGAACCGATTACCAACGGTCATGTCATCTTCATTACACAGCTTTGGCTAGCATTGAGCCCGTTTTTGGATGCTGTTATTACCATTATAGTTATTAAACAGTACAGGTG--------------TAGAAAAAAC-----TATGC--------------------Tgacaattaaaaa---------tttatttgc--------tTTTA-AGGAAAAACTGTCTATCGTGTGCTTCTACTGTTGGAAAACGCATTTGGAAACCTAAAAACACAGATGCAATGTACAGCGATGAGAAAGAAGCATTTGAAAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        82681 340 +   783054 AT---TTGTATT-CAGGTGCCTGCATTTTTGACCCTCAGTTCTGTGTTGCTTCTCTCTGAACCAATCACTAACGGCCAAGTAATCATTATCACTCAACTTTGGTTAGCATTGAGTCCGTTTCTAGACGCCATCATCACTATAATTGTTATCAAACAGTACAGGCAAGTTCACGTATCACGAGCAATAACA----TATccacatttttcgatattttcagtGATATTCTTACA---------TCTTTTCAC--------TTTTACAGGCAGAACTGTTTCTATTGTGCATCACTGGTTGAGAAACGCATTTGGAAACCCAAAAATACGGATAATTTATGCgttgaagaaaaggaagcaTTTGAAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold54      243727 306 +   258924 at---ttgtctTGCAGGTTCCTGCTTTTCTCACGCTAAGCTCAGTTCTACTGCTCTCCGAGCCTATTACGAACAGTTATACAATCATAATAACCCAATTATGGTTAGCATTAAGCCCGTTTCTTGATGCAGTAATTACAATTATTGTAATTAAGCAATACAGGTT--------------TCAAGGAAAACCgtcttttc--------------------taaaaaaaaaaat---------taaactt----------ttt---agAAAAAACTGTATCGATTGTGCCGCAGCAATAGCAAGGaaattatggaaatttaagaaaacggactcaattttcagagaagaaaaagaagcgcTGGAAAC
i caeJap4.Scaffold54    I 760 N 0

a score=698.000000
s ce10.chrX               804145 14 + 17718866 TAGGCTTTGAATTT
s cb4.chrX              21239880 14 - 21540570 CCGACTTTGAGATT
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig24   565187 14 -  1162296 GCGTCTCTGAGGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     94306 11 -   118955 CCGGCTTTGAT---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        83021 14 +   783054 AACTCTCTAATTTC
i caePb3.Scfld02_62     C 0 C 0

a score=-5190.000000
s ce10.chrX               804159 93 + 17718866 -------ACCAACTTTTCCCCTTTTTTGCTGTGTTTAATTTTATCACTTTTGTAAATCTAAAGATCTCATTTTCATTCA--ATTCACGGTTATTTTAATAAA---
s caeRem4.Crem_Contig24   565201 87 -  1162296 TTTGCTCCcatattatttcatttttatgtt------aattctg-----tgtgaaattttattgatctcaattc-atttttca-aaacggtt--CCTAATAAA---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     94317 64 -   118955 -------CTGAA---------CTTTGCATT----TCAACTCTG-----TTTA---------TGATCTCATTTG-ATTAT--A-TCACGGTT---TTAATAAACAA
i caeSp111.Scaffold412  C 0 I 25
s caePb3.Scfld02_62        83035 67 +   783054 -----CCCTGAAAAGTCATCTTTTTGTAAT------------------TGTA---------TGATCTCATTTTCATGAA--G-TGACGGTT---TTCGTGAATAA
i caePb3.Scfld02_62     C 0 I 1795
e cb4.chrX              21239894 14 - 21540570 I

a score=479.000000
s ce10.chrX               804252 19 + 17718866 TATTCTGTTCGTAAAATTT
s caeRem4.Crem_Contig24   565288 10 -  1162296 ---------tgtaaaattt
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold412     94406 16 -   118955 TACTGTGTatgtgaaa---
i caeSp111.Scaffold412  I 25 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21239894 14 - 21540570 I

a score=524.000000
s ce10.chrX               804271 11 + 17718866 TCGGAAAAATT
s caeSp111.Scaffold412     94422  9 -   118955 --gaaaaagtt
i caeSp111.Scaffold412  C 0 I 50
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21239894 14 - 21540570 I
e caeRem4.Crem_Contig24   565298  6 -  1162296 I

a score=0.000000
s ce10.chrX               804282 2707 + 17718866  
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21239894   14 - 21540570 I
e caeSp111.Scaffold412     94431   50 -   118955 I
e caeRem4.Crem_Contig24   565298    6 -  1162296 I

a score=-1499.000000
s ce10.chrX               806989 81 + 17718866 ---------AAT--------------ATTTTGCAAAATTTTTATGCGAAAAAAAAACTATTTATGATCCATTACTTTAAATTAAAGTCTACAAAACA----TCCCACA-
s cb4.chrX              21239908 69 - 21540570 ---------aac--------------atttttcaaatgttgaatG---------------TTGTAAAACTTTATTTTGATCTCAATTTAAT-AAACAAGGGTTacaca-
i cb4.chrX              I 14 I 1
s caeSp111.Scaffold412     94481 79 -   118955 aatattttgaactttaaaaaagctttatttttcaaatgttacTCA---------------TTATTATTCTTTA----------AAATCTAT-AAACA----TTTCTAAT
i caeSp111.Scaffold412  I 50 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeRem4.Crem_Contig24   565298  6 -  1162296 I

a score=4406.000000
s ce10.chrX               807070  89 + 17718866 TCAAAGATTAA------------ATTAAAT---TTCACACTGTGGTTTCAGGCAAGCTCCAGAAATTCTAGTTGACAAAATCGTTGAAACCGATGGATCTGG------AA
s cb4.chrX              21239978 101 - 21540570 ttttaattgaattacATCAATCTACTCAAA---GTCGCAATGATGCTTTTTACAAATTCTAGATGTTCTCGAAGTAAGTAATGAAGAAACGGAATCATCTGA------AA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   565304 103 -  1162296 tcaaaaatgaa-------agccTATTCAAAATGATCGCAATGATGTCTGACACACGCTTGAGAAGTTTTGGTAGCGATGATTGATGAAATAGAAGagtctaaaaatataa
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold412     94560  75 -   118955 -------------------------GCAAA----TCACATTGTGGACGCTCACAAACTCGAGCAGTTCTTGACGAGAGGATTGAGGAAATTGGAGCTCCTGG------AA
i caeSp111.Scaffold412  C 0 I 24
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-1934.000000
s ce10.chrX               807159 25 + 17718866 AATGATCatattttaattaaatttg
s cb4.chrX              21240079 11 - 21540570 CGTTTTTATAT--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   565407 11 -  1162296 atttcccACGA--------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     94635 24 -   118955 I

a score=51190.000000
s ce10.chrX               807184 953 + 17718866  
s cb4.chrX              21240090 758 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   565418 765 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     94659 768 -   118955  
i caeSp111.Scaffold412  I 24 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-14552.000000
s ce10.chrX               808137 135 + 17718866 TCCCACTGAAAAAACTCATTAGAATCAGGTAAGCTATGTCACTTT----TTTCCAAA--------AAAATTTAT---------------------------------TTTGGATCTACAGTGAAAACTTCCAAAATT----------------------------------------CGGACACCAATCAATTATAAATTCTAAA---------------------------CTTTTTTCTGGCTCT
s cb4.chrX              21240848  62 - 21540570 ta--------------tatgTGA----------------CACACC----CTTTTATGATAAAATAGAAATCTAC-----------------------------------TACATCTACTGAACAAAG--------------------------------------------------------------------------CACG------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   566183 245 -  1162296 taata--gaggaGCGTCATGCGGTGCCTGTTCGCAGCGTCACATCTCGGTTTCCAAAGGAaagtcaaaaactgcaaattgaCAAAATGTAGCATAATGTTCATAGAATAttcatcaatttgaaaaagctCCATATCCTTAAATATTGCCGAGAGAGGATACTCCAAATTCTTGCTAGCGGGTGCTCCTCTATCACAGGTTTCACGGTATATTATTAATATTCAGAAACATTGATTTGATTTAAGTCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     95427   0 -   118955 C

a score=102244.000000
s ce10.chrX               808272 333 + 17718866 AAAATAACAATTTCATCTCATAAAATACCTGAAACAATATTGCTCCACTGCTGTTTAGTCGCTGTCAACCACTTCTCCACTTCTTCTCTTGTCATCATTTTTACGATATACCCAGCAGTTCCATTCAAAGCACAATGCACGTATTGGTCTCCAAATTGTTGAATTGCATTTACCGTTATCATTTCCTTTGAATAAATACACCCGACTTGTGTCCACTTAAACTCGACAGTTCCATCTCGATTAATGCTAAACCCACAGGATTCCAGGCGGTCTCCGTTTCTAGCACGATTTTCAAATTGGATGATATCGCCGGATGTTGTTGTGCAGCCCTCT
s cb4.chrX              21240910 308 - 21540570 -------------------------CACCAGAAACAATGTTGCTCCATTGCTGTTGAGTAGCTGTTagccatttttcaacttcttctttaGTCATTATTTTTACAATGTATCCATTTGTTCCATTCAATGCACAATGTACGTATTGTTCTCCAAACTGTTGAATTGCGTTCACCGTTACCACTTCCTTAGAATAAATGCATCCGACCTGAGTCCACTTGAACTCCACTCTTCCGTCTCGGTTGAAATTGAACCCGCAAGACTCCAAACGATCCCCATTTTTAGCTCTGTTTTCGAACGGAACAACTTCTCCTGCTGCATTGACGCAGCCTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   566428 329 -  1162296 ---GACAGAATT-CATCACTTCCATTACCTGAAACAATATTACTCCATTGCTGTTGTGTAGCCGTCAACCATTTCTCAACCTCTTCCTTTGTCATCATCTTCACTACATACCCAGCTGTACCATTCAATGCACAATGAACATACTGATCTCCAAATTTCTGAATCGCATTCACCGTAATCAGCTCCTTAGAGTAAATACATCCAACTTGCGTCCACTTGAACTCCACCGTTCCATCCTGGTTGAAACTGAAACCACATGATTCCAAATGGTCTCCATTTTTGGCTCGGTTTTCAAAAGGAACCACCTCTCCAGTGGATGTAGTACAACCTTCT
i caeRem4.Crem_Contig24 C 0 I 40
s caeSp111.Scaffold412     95427 314 -   118955 ------agaata-------------aaCCTGATACAATATTACTCCATTGTTGTTTTGTAGTTGTCAACCAGTTTTCCACTTCCTCTTTTGTCATTAATTTCACTACATATCCAGCTGATCCGTTCAAAGCGCAATGAACATATTGCTCTCCGAATTGCTGAATTGCATTCACAGTAACCACTTCTTTTGAGTAGATACATCCAACTTGTGTCCACTTAAACTCTACTGTGCCGTCTctattgaaactgaaaccACAAGATTCCAAAACATCTCCCTTTTTAGCACGGTTTTCAAATGGGACAATTGTTCCATCTGTTTTGGTGCATccctct
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-1423.000000
s ce10.chrX               808605 33 + 17718866 ----CAAAGTTAAAGATTTTGGTTTTATAATTATTAC----
s cb4.chrX              21241218 38 - 21540570 AGAAACGCATTAGAAATT---GTTATACAGTTGGTAACTAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     95741 32 -   118955 --gaaaattttaaagtca---actttaaaattttcac----
i caeSp111.Scaffold412  C 0 I 6
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeRem4.Crem_Contig24   566757 40 -  1162296 I

a score=319.000000
s ce10.chrX               808638 7 + 17718866 CAATCAT
s cb4.chrX              21241256 7 - 21540570 AAGTCAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     95773 6 -   118955 I
e caeRem4.Crem_Contig24   566757 40 -  1162296 I

a score=0.000000
s ce10.chrX               808645 398 + 17718866 TTTCAATAACTCGGTAGATTCTTTTAATGAAATTTCCTATTTTTCAATATAGTTAGATTCATAAAACCAACGTCGTATAAAGCGAAATGTATTTGTATTGAAATAAAAATACAGAAAATAACCACGTTTTAAAGTGATTACCGACATAAAATCATTATCGAGTTCCAACCTGTATATAGTCTGTTCTATGTGATATGTCTACCCCGCTTGTGCAGTGTAGGGTGAGTTCTTGTGTGTAGCATTTTAGCCTCTATGCCTAGCCACAAAACGGTCGGTAGCTCATTGGTATTTTTTTTATTAATTTCCTTATGACTATGCACATTAATATGTCACCTTACAACATAATTTATGTTTTTTTCTTGTGCGATAACCCGAATACCCTACTAAATATGTTATGC
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21241263   0 - 21540570 C
e caeSp111.Scaffold412     95773   6 -   118955 I
e caeRem4.Crem_Contig24   566757  40 -  1162296 I

a score=136.000000
s ce10.chrX               809043 6 + 17718866 AAACTC
s caeRem4.Crem_Contig24   566797 6 -  1162296 aaacaa
i caeRem4.Crem_Contig24 I 40 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21241263 0 - 21540570 C
e caeSp111.Scaffold412     95773 6 -   118955 I

a score=71163.000000
s ce10.chrX               809049 222 + 17718866 ACTCAAATCTCCGAATGATCGAACTTGTGTTCCTTGAAAACAATAAAAAGCGTTTCCATCAACGTAGCGAATTGCATACAATGGAATAAGGTAATTTCCAACAAGGCATCCTTCTTTCTCCACTTTCCCGAATTGGCATGCATAAACCGTGGCACCATCTTCCGAGTTCCATTCCTCATTGTGCCTGTATACTTTTCCATTGTGTCTGCATCCGAGTTCTAA
s cb4.chrX              21241263 222 - 21540570 ACTCAAATCCCCAAACGATCTGACCCGAGTTCCTTGAAAACAATAATAGGCATTAGAGCCAATGTATCGAATGGCATATAATGGAATTAACAAAGATTCCACTAAACAtcctttcttttcaatttttccgaattgaCAAGCGTATGCGGTTGACCCATCTTCCGATACCCATTCTTGATTATGACGGTATATGTTATTACCATGTTTGCATCCAAGTTCTAA
i cb4.chrX              C 0 I 3758
s caeRem4.Crem_Contig24   566803 222 -  1162296 actcaaATCTCCGAACGATCTGACTTGAGTTCCTTGGAAGCAGTAGAAAGCATTTCCTTCAATATACCGAATAGCATACAATGGGATGAGAAGACTCCCCACAAGACATcccttcttctcaatttttccaaactggCAAGCATATGCTGTGGAACCGTCTTCAGAATTCCATTCCTGATTGTGGCGGTAGACACTGTTATTATGTTTGCATCCCAGTTCTGA
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     95779 221 -   118955 ACTTAAATTTCCAAACGATCTGACTTCGGTCccttgaaaacaataaaatgcGTTTCCATCGACATAACGAATTGCGTAAAGTGGAATAAGAAGACTTCCAATAAGACAAcctcgtttttcaattttaccAAACTGGCAAGCATATGCTGTTGTGCCGTCTTCAGAGTTCCATTCTTGGTTATGCCGATATACTTTATTGTTGTGTCTGCATCCGAGTTCTA-
i caeSp111.Scaffold412  I 6 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-2074.000000
s ce10.chrX               809271 39 + 17718866 -TAGAAAAACCGTAACAAAAGTTGTAAATTTTCATTTACG---------
s caeRem4.Crem_Contig24   567026 40 -  1162296 CAAAGGAACACTTATCAATA---------ATGTTGTTGACTATAACAAC
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     96000 30 -   118955 -TATAAATCTTTTATCAACA---------TTTtgtttaag---------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21241485 3758 - 21540570 I

a score=65329.000000
s ce10.chrX               809310 267 + 17718866 ----ATTTACCAGTGACTTCAGCTTTTCTCAGCACACACTTCCCCTCAACCATTGCACATTTGACAACTGCATCGTCTACAGTTCCGAAATCTTCTGGTCGAATGTATGTGTTCTCTGCAGTTAAGCAGGCTGGAATTAAAGTTGTAAAGTTGGTTAATACGTATC----TTTTTAAGTGCAACCTGCAACTTCTACAACAAATGAGCCATTTTCCGATTTTTTGCATTGCATGGTAGATCCCTTTCCAACAACTTTGTTCTCTGAGCCAATCTG
s cb4.chrX              21245243 262 - 21540570 ----aTCTACCTGTCACTTCAGCTTTGCGAAGAACACATTTCCCTTCTACCCATGCACACTTTACTACTGCTTCGTCTACAGTGCCGAAATCCTCAGGGCGAATGTATGTGTTTTCGGATGTCAAACATGCTAAAT-TCGAGC-GTGGTATTTTTTACcgagtaattt--tttt----caa-acctgcTACTTCAACTGCAAACGTTCCATTCTCATACTTTTTACATTGCATTGTTGATCCTTTTCccacaacttttttctccgaGCCAATCTA
i cb4.chrX              I 3758 C 0
s caeRem4.Crem_Contig24   567066 264 -  1162296 ----ATATACCCGTCACTTCTGCCTTGCGGAGTACACATTTCCCTTCCACCCACGCACATTTTACGATTGCATCCTCCACTGTTCCAAAGTCTTCTGGTCTGATGTATGTGTTTTCCGATGTCAAGCAAGCTGAACATCAATC------ATTTTGTATCACTCAATATGGTTTTAAAGCGA-ACCCGCTACTTCCACAGCATATGttccattttcatattttttgcattgCATGGTTGACCCCTTTCCAACAACTTTGCTTTCCGACCCAACCtg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     96030 269 -   118955 aaaaaaatacctGTTACATCCGCTTTTCGGATCACACATGTTTCATTTCCCCACGAGCATTTCACAACTGCGTCTCCTACTGTTCCAAACTCTTCCGGGCGAATATAAGTGTTTTCTGATGTTAGACATGCTGAAActcgttt------tcttgttttcaaactATGAAGTTTTCTAATGACACCTGCCACTTCCACCACATACGATCCGTTTTCATGCTTTTTACACTGCATCGTTGATCCTTTTCCCACTACTCTATTCTCAGATCCAACCTG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-7033.000000
s ce10.chrX               809577 115 + 17718866 AGTTAAATGGAATTTGGAAACTGGATCAAATTTGCAAAAAAAATTATGAAGAACTTGAATCACGTTTGATCCAAAATCCAGTTGATCAAAGTTAATAGCTTACACGCCAATTGTC
s caeRem4.Crem_Contig24   567330  13 -  1162296 --gtaatt-----------------tca----------aaaa-------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     96299  30 -   118955 -TTTTAAT-----------------TCATGTTGGGAAGAAAA-----------------CCACGT--------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21245505   0 - 21540570 C

a score=-2551.000000
s ce10.chrX               809692 37 + 17718866 TTTGAATCTACCCCAAAGTGTTACTACCAAATATTTT-
s cb4.chrX              21245505  5 - 21540570 ---------------------------------TTcga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     96329  8 -   118955 -----------------------------AACATTCT-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeRem4.Crem_Contig24   567343  0 -  1162296 C

a score=-6878.000000
s ce10.chrX               809729 121 + 17718866 GTACCGGTTGTTTACATCTTTACCTATCCTTAGTATTCACTTACGCATATCAAAACATTGAATCAACATATGCGCTAAAAAACATAATTTGAAACTGTTAGAAGAAATACAACTAAATAGA
s cb4.chrX              21245510  35 - 21540570 ---------gtttaattttttttttgttctgaattttc---------------atcatt--------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   567343  27 -  1162296 ---------------------ttttaatctaACGACTA---------------GATATT--------------------------------------------------------AGTA--
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     96337   0 -   118955 C

a score=125497.000000
s ce10.chrX               809850 670 + 17718866  
s cb4.chrX              21245545 638 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   567370 583 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 39
s caeSp111.Scaffold412     96337 550 -   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-1949.000000
s ce10.chrX               810520 40 + 17718866 atttatttttttttctttttaattttCTAATTCAAAACCC-----
s cb4.chrX              21246183 40 - 21540570 -Attgttatatatttttttaatt----ctattCTTTTCCCGCCCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     96887 36 -   118955 ---caaaatttttttctttaattagTACAAGTTAAGTTC------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeRem4.Crem_Contig24   567953 39 -  1162296 I

a score=29779.000000
s ce10.chrX               810560 421 + 17718866 ACCAGCAATATTGTAACCCTTTACACTTCCACTTTGATAGCATTGGTACTTGATATAGTTTTCCACAAAATAACTTCCCGGATTACAATTCTCCAGGTTAATTGGAGAAATTGCAGCTGAAAGTGGAAATATTCCGAAAAGTAGGAAAGTAACGAT------GTTCATGTCGAAAAGACAGGAATG-------AAAATTTGGGGAGCTGGGATG------GGT---------GAGGGATGTCAAAAAGTGCAGTAAAGAATGCAAAAAAACATGAGGGGAACAGAGATGTGGGG-GAATTTAGGGAGAACGATTTATCAACCGATCGGACATGTCTCTGCGAGTATCAAATACATCTCTGGTA--------------------CATTTATTATTGATCGGGCTTTATTT-----------------AAAAAAACAAAATGGGGAGCTCATAGAGCTCAATTATATGACAAATGTTTATTTTTTAATG
s cb4.chrX              21246223 330 - 21540570 ACCAATAATAGTATATCCTTTGACAGTTCCACTTTGAAAACATTCATACTTGATGTAGTTCTCCACAAAGAAGCTCCCTGGGATGCAGTTTTCCAAGTTGATCGGAGAAATGGCGCCAACTATAGCAAAATGAGCTAGAAGTATGAAAGCTATGGTCGAGAACCTCATGTCAAAAAGATTCGAATGGAGTGTAAG----CTGTGGGATGTGTTG------------------GTCGAATGTC-GAAAGTGCAGTAAAGAATGCT-AAAA----------AATAGGGATGTCAGG--------------ACACTCAA------GAA--------------------ACAGA---------ATTG---------------AGAACCA-----------------------------------------AGAGAAGCAGAGTGAGTGGAAAACGAG---CAATCATTTATCAATG---------------
i cb4.chrX              C 0 I 67
s caeRem4.Crem_Contig24   567992 433 -  1162296 ACCAGCAATAGTGTATCCTTTAACTGTTCCACTTTGGAAGCATTCGTATTTGATGTAGTTCTCCACAAAAAAGCTTCCAGGGATACAGTTCTCTAGGTTGATTGGAGAAATAGCAGATGCTATTCCAAAGAATGAAAGGAATATAAGAAAAACGGTTGATCGGCTCATGTCTAGAAGACACAAATT-------AG----TTGTTGAGTGGGCTGACACTCGGTAGGAGGGACGCTAGATGTT-GAAAGTGCAGTAAAGAATgctaaaaa----------aataaagatgtCAGGGGAGGATAGGAggaacagaaaa------gaaaaaaccaacCCCAGTGAGTGACAGA---------GTggggggggggATAGAAAGGAACCATTTATCACTTCATTCGACATCTCAGTATCAAACGGATCGCCAGATCTATAGTGTGGAGAGAAGATAAG--ccgaaaatttgggaaaa---------------
i caeRem4.Crem_Contig24 I 39 I 6
s caeSp111.Scaffold412     96923 367 -   118955 ACCAATGATGGAGTATCCTTTGACTTTGTCATTCTCGAAGCATTCATATTTAATAtagttttcaacaaaaaagctACCAGGAGTACAGTTTTCCAAGTTGATTGGAGAAACAGCAGAAACTACCCCAAAAACTGCAAGAAAAATGCACAAGGAAGAAAATAGGTACATGTCGAAATGACTGACTCA-------AG----TGATGGGTTTGAGAG------GGTAGG------GGAGGATGTT-GAAAGTGCAGTAAAGaatactaaaaa----------aa-----atatcaga----GCTAGAGGGAACAGgaaa------gat-------tttttgactgGTGAGAGA---------GGTG--------------------CATTTATCAATGTGATGG-------------------------AAGGAGGCAACTCGGTTGCACA--------CATGTATCCAACAGAAATTGGTTCTCTTC--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-10737.000000
s ce10.chrX               810981 200 + 17718866 ACAATAAATAGACCATA---ACGAGACCACAGTCCTGAAACTTCTCAAACTAGGGAAACA---GTTTTCTGCTAGTATTTTTTTTCCTAAATTGTTTTACTACGCTAACGCGGATTTCTTGAAAGCTTCGAATCTTAGATGCAGGCTTTCTGGTGATGGTACTAATTTATTGTTAAGTAACTTGGTACTTACTTTTCAAAATTCTA-------------------
s caeRem4.Crem_Contig24   568431 170 -  1162296 -CAATAACTTATGTCTAACGATGAAA-CGCGGGGTAGAGATGACTCACATTGTtgaagaaaacgtttttttgagCTTCTATCAATACGAAAAAATAGTATTAGTTTTGTAGG--------------TATGTATTTGCGGTGCAG------TGG-AATTGTatcatttt-------------ttggaacttttatgtgaaaacaaaa-------------------
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold412     97290 129 -   118955 --------------------ATAAGA-CATTGG--------------TATtacgaaaacacatttttttatttgctaC--TCATTGcaaagaatttttatttg-ctAGCAGGGA-----------ATATGAGTTTTC------------------ATTGTATCAgttt-------------t----------------aatcaaaaactagTCAATAGATTTTGA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21246553  67 - 21540570 I

a score=24620.000000
s ce10.chrX               811181 182 + 17718866 AACATTTATTCATTTTATAGTTATCAAAATTGAATATATATACACAACCAAACAAAATATTCAAA--TATTGTCAAACTTTTGGAGCTCTGACAAGTGCTTCTTGAGCAGTCGAAATGATAAGTCGACCATCACGAGACCATAAACGGCCTTCAATAAATGCACGACTTCCACCTAGAATTTA-A
s cb4.chrX              21246620 166 - 21540570 aacaattttt---------attaACAAAACTAAGGATGACATTAAA-----GCAAATTAAACGAG---CAGTTCAAACTTTTGGAGCTCGAACCAATGCTTCCTGTGCAGTAGAAATAATTAGGCGTCCATCGCGAGACCACAATCGACCCTCAATGAATGCTCGACTTCCTCCTGTGAACAa--
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig24   568601 162 -  1162296 -------------------aaagacattACAAAGTATACTATTATATATGTACACATT--CCGAATTTCCATCTAAACTTTTGGTGCTCTGATCAAAGCTTCCTGTGCAGTTGAAATGATCAGACGACCATCACGAGACCATAATTTGCCTTCGATGAATGCTCGGCTACCTCCTAAAAATAG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97419 126 -   118955 ----------------------------------------------------------ATCAGTAATTAGTTTTAAACTTTTGGTGCTCTGATTAGTGCTTCTTGAGCAGTAGAGATTATGAGTCTACCGTCACGGGACCACAAACGACCTTCGATGAATGCTCGGCTACCACCTAAAGATAAA-
i caeSp111.Scaffold412  C 0 I 28
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-1440.000000
s ce10.chrX               811363 31 + 17718866 CGCCATTTCTTAAAAAATATTTTA--CAGAATT
s cb4.chrX              21246786 29 - 21540570 caaaatatg---ataaatacCAAG-TTATGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   568763 33 -  1162296 AACAGTTTGGCTATGAATTTTACGATTAAAACT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     97545 28 -   118955 I

a score=129863.000000
s ce10.chrX               811394 451 + 17718866  
s cb4.chrX              21246815 560 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   568796 450 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97573 409 -   118955  
i caeSp111.Scaffold412  I 28 I 6
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-1060.000000
s ce10.chrX               811845 20 + 17718866 CTGGAAAATATATAATAATG
s cb4.chrX              21247375 20 - 21540570 CTGAAACAGAGTTCACAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   569246  2 -  1162296 CT------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     97982  6 -   118955 I

a score=195.000000
s ce10.chrX               811865 18 + 17718866 GAAAGTAAACCTAGAATT
s caeRem4.Crem_Contig24   569248  6 -  1162296 ------------AGAATT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21247395  0 - 21540570 C
e caeSp111.Scaffold412     97982  6 -   118955 I

a score=0.000000
s ce10.chrX               811883 114 + 17718866 GCAGTGTAATGTTATTATATTTTTTAGTTATATTTCAAgcttccatgggaggtgggcctgttttcaggacgtgacgcctgcctctaacctgcccgcctcacgccggcctctcgc
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21247395   0 - 21540570 C
e caeSp111.Scaffold412     97982   6 -   118955 I
e caeRem4.Crem_Contig24   569254   0 -  1162296 C

a score=-235.000000
s ce10.chrX               811997 19 + 17718866 cttatttttacgccatggc
s cb4.chrX              21247395  6 - 21540570 CTTATT-------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412     97982  6 -   118955 I
e caeRem4.Crem_Contig24   569254  0 -  1162296 C

a score=0.000000
s ce10.chrX               812016 26 + 17718866 gaacaatcaaaggcttcatgtttgca
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21247401  0 - 21540570 C
e caeSp111.Scaffold412     97982  6 -   118955 I
e caeRem4.Crem_Contig24   569254  0 -  1162296 C

a score=104418.000000
s ce10.chrX               812042 630 + 17718866  
s cb4.chrX              21247401 549 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   569254 621 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97988 497 -   118955  
i caeSp111.Scaffold412  I 6 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-7275.000000
s ce10.chrX               812672 102 + 17718866 ATGTTCTCATGTTTTGTGATGATCGAGTCAGGAATTGTGCGACGTGTGATGTCACATCATTCAAAAATATATT-ATAAGCAGAGTCAAAGACTTTATTAATAA
s caeRem4.Crem_Contig24   569875  10 -  1162296 ---------------------------------------------------------------aaaatatatg------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     98485  28 -   118955 ---------------GTGATGA-----------------------GTAAT--------AGTTTAAAacgttagt-----------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21247950   0 - 21540570 C

a score=4063.000000
s ce10.chrX               812774 899 + 17718866  
s cb4.chrX              21247950 585 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   569885 715 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 13
s caeSp111.Scaffold412     98513 641 -   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-3958.000000
s ce10.chrX               813673 57 + 17718866 AACCCTGCCCCAGTGACGTCACTTTTTTCAACCATCATCAAGCCTACATCTTCTTCA
s cb4.chrX              21248535 14 - 21540570 -----------------attagttattttaa--------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     99154  3 -   118955 -----------------------------aac-------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeRem4.Crem_Contig24   570600 13 -  1162296 I

a score=-4728.000000
s ce10.chrX               813730 46 + 17718866 TAATCAGGTTTCAGAAACAAA---AAGGGAAAGAGT------ACCAAAA---AAAATT
s cb4.chrX              21248549 32 - 21540570 --attaa------------aa---aaggaaacaagT------CCTTCAA---ACAACT
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig24   570613 45 -  1162296 TAATTCG------------AATTGACGGGTACAAATGGACAATCATCAAGTTACAAC-
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold412     99157 27 -   118955 -gTTTGG------------AA---AAgcat------------ctttcaa---aaaatt
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-3992.000000
s ce10.chrX               813776 56 + 17718866 TTTTTGAATTATTTTTGATCTACATTGGTAAACTGAACACCCCACCTTCATCCGAT
s caeRem4.Crem_Contig24   570658 18 -  1162296 -----------TTTC---------------------TCTCCCAACGTTCA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     99184 19 -   118955 ----tgactGAATTC---------------------AAGCCGAA------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21248581 26 - 21540570 I

a score=287793.000000
s ce10.chrX               813832 1643 + 17718866  
s cb4.chrX              21248607 1476 - 21540570  
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24   570676 1513 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     99203 1411 -   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=-15833.000000
s ce10.chrX               815475 222 + 17718866 CACCTGAAAAATAGTTTTGTTCAAACAGAATATTATACAATATTTAATATTTTGGTAAAGGCTCAGTGTGCACTTGATACTTTATTCAGGTTTTCCGGattaatttatttaat--------------tataaaaat---aaatttaaaaa---aCTTGGCGCACTCCATACC------------------------------------AAAATTATTT--GGACAACAATGATTATAAACCTATCACTTACACAGTTTCAAAATCTAGTAAAATTCAA------------CT
s cb4.chrX              21250083  57 - 21540570 AACCTGGAACG----------------------AATGCA--------------------------------------------------------------------------------------TATGGAAAAAT-----------------ACATG--------------------------------------------------AAAa--------gatcaatattt----tgaataa------------------------------------------------cT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   572189 262 -  1162296 aacctgaaaaa----------------------aacgaaacaacttatattttgaaaacaaaaaagtgtt--ttttagaGTGTCTTCTACTACTCT-AATAATCATAGTCAACATTTATCCGGGttgtacaaaaatgtttactcCAAAAACTGACATGGCATTTTTACTTCCTTCAGTAAACACCCTCAACTGTCCTGTCGCTACTCCAAAATTATGTTTAATCAGCATTTCTGCTGAATCACTC-----cgaaattttgggaaatgatgatgttatATGACTGTAAGTTCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412    100614   0 -   118955 C

a score=78779.000000
s ce10.chrX               815697 455 + 17718866 AACCTTCTCTACATATCGTGCCAATCGGTTATTCAAATCTGCAATTTCAACCTTCTCCCTTTCACGATTGTCTCTGATGATAGCAGCCGCATTTTGAGCATATGCAGAAAGTGCTCCACTGGTAGTTATTCCGGTTGGCAAATTTGTCCGCCCGCTTTCAATAATTCTTGCAAGAGCGGGATGATTTTGCAGACGCGTTGGGTTGAGAGGGTCAGTCATGGCGTTTTTATTCTAGAA-ATTAGTTTTGAATAAAAA---AAAACAAAACTTGAATATTTTTAATTTGAATATAAAACACTGAAACTAAAAAATGAGAAAAACTGAGCCGTTCCAATCACTATTATCTAAATAAATAATAGTTGTATAGCGACATTA----ACGGTCTGAAACACTTA-------AAAT--------------GGTAAAACGG--GGCGTTATCAACCGCCTCCTTA-TCACTTATCACGCAGGCTAGC-------------TCATTTGGA
s cb4.chrX              21250140 442 - 21540570 TACTTTCTCCACGTATCTAGCCAACCGATTGTTCAAATCTGCAATCTCGACTTTCTCTCTATCACGATTGTCTCGAATGATTGCAGCAGCATTCTGAGCATACGCCGAAAGGGCACCACTTGTGGTTACTCCGGTCGGAAGGTTTGTTCTACCACTCTCAATAATTCGTGCAAGTGCTGGATGGTTAGTCAAACGTGCTGGATTCAGCGGGTCAGTCATAGTTa--ttatctgaaaa-------------caaaagcGTAAGTTAAGAGTCGACTAGT-----------------ACATCGCGGGAGAAAGAAAAGGGAATGATAATAATTGCAAGCA-------------AAATAGACACTATACAGTAATA-AATTGGGCGTTTGGAATAAAACACGAcaccaaaaatgtgtaaataaG-AATGTAATGGGCGGCGTTATCAACTGTTCACTTTTTCTCTTATCATGTTTATTAGGAC-----------TCACTTCGA
i cb4.chrX              C 0 I 788
s caeRem4.Crem_Contig24   572451 445 -  1162296 TACCTTTTCCACATATCTTGCCAGTCTATTATTCAAATCTGCGATTTCAATCTTCTCTCTGTCACGATTATCTCGAATAATTGCGGCTGCATTTTGAGCGTATGCTGAGAGTGATCCACTACTGGTGATTCCAGTTGGGAGATTTGTTCTTCCACTTTCAATGATCCTAGCAAGAGCTGGATGATTGGTCAAACGTTTCGGGTTAAGCGGGTCGGTCATGTTAA--TTATCTGTAAGGATTAGT----atcaaaag---aaatgaaaaattgagtgattGTAGCATT-------GACAATGTGCG-GGAAGACAAAATGATGATAATAgttgtaaaaa------------taaataaatgttgTATAGCAACACAAGAAGACAGTCTGAAACAATCA-------AAACGTATCTAACTGAG-AATGCAGATG--GGCGTTATCAActgttctcttttcctcttatCATGTTTGTTG----------------CGTTTGGA
i caeRem4.Crem_Contig24 C 0 I 2215
s caeSp111.Scaffold412    100614 417 -   118955 AACTTTCTCAACATATCTTGCCAATCTGTTATTGAGATCAgcaatttcaactttttctctctctcgatTGTCTCGAATGATTGCAGCGGCATTCTGAGCATATGCTGATAGTGCGCCGCTGGTAGTGATTCCAGTCGGAAGATTTGTTCTGCCGCTTTCGATGATTCGCGCAAGAGCTGGGTGATTAGTCAAACGGGTCGAATTAAGCGGGTCAGCCATAATGAtcttaaatgaaaa--------------aagaatggaaaacaaagattaaa---------------------aca--------taaaaatgcagaaatgGCAATTGTATGAATAG-------------AACAAGGCAAGGTGTA-------CACAAGACAATCTGAAACAATCA-------AAACGTATCTAAATGAGCAAAAGAAATG--GGCGTTATCGAC-----------CTTCTTATCATGTTTGTTTGAGCTCAAACGCTGTTCAATTGGA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=373.000000
s ce10.chrX               816152 4 + 17718866 ATGT
s caeSp111.Scaffold412    101031 4 -   118955 ATGT
i caeSp111.Scaffold412  C 0 I 1507
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21250582 788 - 21540570 I
e caeRem4.Crem_Contig24   572896 2215 -  1162296 I

a score=0.000000
s ce10.chrX               816156 2829 + 17718866  
e caePb3.Scfld02_62        83102 1795 +   783054 I
e cb4.chrX              21250582  788 - 21540570 I
e caeSp111.Scaffold412    101035 1507 -   118955 I
e caeRem4.Crem_Contig24   572896 2215 -  1162296 I

a score=338.000000
s ce10.chrX               818985 11 + 17718866 GAAAAAAAAAA
s cb4.chrX              21251370 11 - 21540570 GAAGAATAATG
i cb4.chrX              I 788 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412    101035 1507 -   118955 I
e caeRem4.Crem_Contig24   572896 2215 -  1162296 I

a score=354.000000
s ce10.chrX               818996 9 + 17718866 ACTAACATG
s cb4.chrX              21251381 9 - 21540570 ACGTACCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   575111 9 -  1162296 ACTTACGAG
i caeRem4.Crem_Contig24 I 2215 C 0
e caePb3.Scfld02_62        83102 1795 +   783054 I
e caeSp111.Scaffold412    101035 1507 -   118955 I

a score=7431.000000
s ce10.chrX               819005 331 + 17718866 TTGATTTTCAACTCAATCCAAACTGGACAATCATGAATTGACGGGCGTTCTGGGTATGCTTCTCCAAATCCTTTGCAGAACGAGACACGGACACAACAGTACTTGGCCA----------ATGAATCAGTGGTGCGTGTTGCTTCCTGAATATATTTTTATAACTTCAAACAAAATC-TTACACTCAAAAT-------TACCCTTCGCAGCTCTTC------CTGAGT----CTTCTTCTCGTAGATATAATTCATCGG-----AGTCAATTTTCCT---------TGCAAGTACATTGTTGCCATTTGCTTGGAAAGAAGCGCGTCTCTGATGATTTG--------TTTGGAAACGTTGAAGCCAAA-----------------------------------------------CGTTTTGATAGACG
s cb4.chrX              21251390 375 - 21540570 TGAATTCTGAGTTCTACCCATACTGGTGTTTCTG---CGATTGTTGCCCGAGGATAATCTTTTCCAAATCCTTTACAAAATGATGCTCTCACGAAGCAGTATTTGCTGATGTCATCTTGTAAAGTTTGT----------GCTTCCTGGA---AAACTAATTGTTTtgaaacccatttttgatttcaagtt-----cttacttttttga---tatc------ctgtAT----GCTGAGCT-------CTCGAAAAACGTGATTCATCGAGGTCACTGCACCTTTAATGTAGCTTTGa----gcaaaatattttgagaacaGTTTATCTCTGATGAGTTC--------TTTCGTGCGCTTCAATCCGAACACCTAAATAGGAACACCATTAAGGCATGATACGACTAAATTGAAATTACCTTTAGTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   575120 336 -  1162296 TTAATCTTGAGCTCCAACCAGACAGGACACTGTGATACGATAGGACGCTCTGGGTATGCATCTCCAAATCCTTTTCCAAACGAAACCTTGACACAGCAGTACTTGACAA----------GAGAGTCGGTGGTTACACGAGCTTCCTGAA---ATTACACAACTTATAAAAC------TTGGCTTAAAGCTGATAGGTTACCCTTTGAA---TAGCAATAAGAGGTAT----CCGGTGGT---AAACCTCGAACATTGG-----ATTGCGGTTGCCG---TTTTGTTGCAAGTATAATCTGGCCATTTGTTTCGAGTACAATCGGTCTCTTATAATCTG--------CTTTACTCTTGTAAAGCCGAA-----------------------------------------------TACTTTGACTTTAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    102542 331 -   118955 TTGACTTTCAACTCGAGCCAAACTGGGCAATCAATTATAGATGGGCGGTTTGGATATCCTGCACCAAATCCTTTACAGAGCGAAACTTTGACGCAACAATATTTACAAA----------GAGAGTCGACAGTTCTCATTGCTTCCTGAA---GCTAAGATGAGTCAAAACA------TTGGAAACAAGCT-------CACTTTCTGAA---CATC------CCGCGTGGGCCTTGTGCT-GTAGACCACACCCATTGG-----AGTAGGGATTCCA-----TCAATGTGGTTACGA----GCCATTTGTCTTGAGAAAAGTTTGTCTCGGATGGCTTGTGTCACCTTTTCGTGCCCATAAacctgaa--------------------------------------------aattcttttaaatt---
i caeSp111.Scaffold412  I 1507 I 33
e caePb3.Scfld02_62        83102 1795 +   783054 I

a score=57965.000000
s ce10.chrX               819336 204 + 17718866 CACATCCGTAAACTTTGTGCACTTTATCCTTCTTTAGGCCTCCTGATTGCTCGTCGAGATACCCAGAAGTGACAAATACCGGGTACTTCATGCGGTTTTGAAGCCAAACACTCCCGTCTTTTTTGTAGGAAAAGCGAATTCCATCCACTATTGCTTTACTGAAACATTTCAATGGTTCAAAAGCTTTAAAAATTTGTGTTATTT
s cb4.chrX              21251765 200 - 21540570 AGTTTCCGTAAAGTTTGTGAGTTTTATCGTTCTGCAGCCCAATCGACTGATCATCTAGATAACCAGAGGTGATAAAGACAGGGAAAGTCATAAAGTTTGTGAGCCAGACACTACCGTCTTCTTTATACGAAAACTTAATTCCATCAACGATTGCTTTCCTGAAA---TTGCATATTTTATAGATGTTGAGGATTGTATTTTTT-
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   575456 164 -  1162296 CATGTCCATAGAGTTTATGAACTTTGTTGACTCGAATGCCTGGGCATTGATCATCAAGATAACCAGAAGTGACGAAGATTGGGAGTCTCATGTTGTTTTGGAGCCAAACACTTCCATCGGTCTTGTATGAGAAGCGGATTCCATCAATCATTGCtttactgaaa----------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    102906 200 -   118955 CGGCTCCATAAATTTTATGCACTTTATCTTCTTTGCGACCTCCATATTCTTCATCCAAATATCCGGAAGTCACGAAAATCGGGTAATTCATATTGTTCTGAATCCAAACGCTTCTATCTTTCTTTAGCGAAAAACGAATTCCGTCGATTATTGCTTTTCTAAAA----TATACGTTTCGACTGTGACATGAACTAGTATTATCT
i caeSp111.Scaffold412  I 33 I 1
s caePb3.Scfld02_62        84897 164 +   783054 CGTGTCCATAGATTTTGTGTACTTTGTCCGGTAGCAATCCTCCACACTGTTCATCAAGGTAACCGGAAGTGACGAAAATCGGGTGCTTCATGTTATTTTGAATCCAAACACTTTTATCTACTTTGTATGAGAATCGGATTCCTTCAATGATAGCAGCCCTGAAG----------------------------------------
i caePb3.Scfld02_62     I 1795 C 0

a score=0.000000
s ce10.chrX               819540 1 + 17718866 C
e caePb3.Scfld02_62        85061 0 +   783054 C
e cb4.chrX              21251965 9 - 21540570 I
e caeSp111.Scaffold412    103106 1 -   118955 I
e caeRem4.Crem_Contig24   575620 0 -  1162296 C

a score=-9049.000000
s ce10.chrX               819541 150 + 17718866 TTTAGTTAGAAAATTCATAAGCTGGAAACTATCGAACAACATTTCCGAATTTGGATTGGATTGTTACCCTGATACTGTCATTGCCCAAAAAATTGGATTGTAAAAAAAATTGTACCTATGTTCTATAATATATCAATAAGTTTCAGATTT
s caeRem4.Crem_Contig24   575620  36 -  1162296 -------------------------------------------------------ttgaa------------------------------------aacatcacaatATTATTCTCCATTTCTAATG-----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        85061  42 +   783054 ------------------------------------------TTCCGACTTT--ATTGaa------------------------------------ggtattcaaaaaatttgagacaaACC----------------------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21251965   9 - 21540570 I
e caeSp111.Scaffold412    103106   1 -   118955 I

a score=-311.000000
s ce10.chrX               819691 4 + 17718866 -ACTT
s cb4.chrX              21251974 4 - 21540570 -ACTT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24   575656 4 -  1162296 -ATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        85103 3 +   783054 CAT--
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    103106 1 -   118955 I

a score=24945.000000
s ce10.chrX               819695 105 + 17718866 ACCGAACTTTAAACGCCACTGGTTCTCTAATTGGATTTGGCTCAAGTCCGAGACTGTAACGATTCTCAGAGCAAATGAATCCGCCATCCACGTGGAAATTTCCTC
s cb4.chrX              21251978 105 - 21540570 ACCGGACTTTGTATGCTGCGGTCGATCTGTATGGATTTTCGCAAAGTCCCAAACTGAAGCGGGcgtcagaaatcaaaaagccTCCATCCACAATTATAGTTCCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   575660 105 -  1162296 ACCGAATTTTGAATGCCATTGTACTTCTGGATGGGTTTTGAATGAGACCGAGGCTCAGTCGTTGTTCCGAGATGATGAATCCGCTATCTATATGGAAGTTTCCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    103107 105 -   118955 ACCGAACTTTGAAGGCATCATGACTTCTTTGGTGGTTGTCTTCCAGCCCAAGGCTAAAACGGTTACTTGATGCAATGTATCCACCGTCTATATGAAAATCGCCTC
i caeSp111.Scaffold412  I 1 I 2459
s caePb3.Scfld02_62        85106 105 +   783054 ACCGAACTTTGTAAGCATCATCCGTCCTTGTAGTATTTTCTTCGAAACCCAAACTATATCGATGGTCTGATGAAATGAAACCACCATCCACGTGGTAGTCGCCAC
i caePb3.Scfld02_62     C 0 C 0

a score=472.000000
s ce10.chrX               819800 58 + 17718866 --TCGAACATTTTTTCTCGCCAATTTGCAAATTT--------TTCTCATAGTACACAATTGTTCCCCA
s cb4.chrX              21252083 61 - 21540570 GAT----CAAGTGCTTt---catttcggaaattttggagtCCTCCTCGTAATAAGTGAGTGCGCCCCA
i cb4.chrX              C 0 I 1315
s caeRem4.Crem_Contig24   575765 58 -  1162296 TGTAG--CATTCTCTCT---CGATGTAGCAATCT-----CCCTCTTCGTAGTAGCTAACAACTCCCCA
i caeRem4.Crem_Contig24 C 0 I 1021
s caePb3.Scfld02_62        85211 58 +   783054 -GTCT--TATTTTCCTT---TCACCAATGAACTT----GTGGTGCTCATAGTAAAGAACGTTTCCCCA
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    103212 2459 -   118955 I

a score=633.000000
s ce10.chrX               819858 31 + 17718866 TTTTTCGTTCACTGAAAAAAGCAAGCAGTTT
s caePb3.Scfld02_62        85269 31 +   783054 AACGCCAtcctctggaaaaaaacaacaattt
i caePb3.Scfld02_62     C 0 I 3286
e cb4.chrX              21252144 1315 - 21540570 I
e caeSp111.Scaffold412    103212 2459 -   118955 I
e caeRem4.Crem_Contig24   575823 1021 -  1162296 I

a score=0.000000
s ce10.chrX               819889 1015 + 17718866  
e caePb3.Scfld02_62        85300 3286 +   783054 I
e cb4.chrX              21252144 1315 - 21540570 I
e caeSp111.Scaffold412    103212 2459 -   118955 I
e caeRem4.Crem_Contig24   575823 1021 -  1162296 I

a score=2581.000000
s ce10.chrX               820904 52 + 17718866 CAATAAATCACCGACTATACAACTATAATCATACGCCTCGTGGTCTCAACTT
s caeRem4.Crem_Contig24   576844 52 -  1162296 CAATAAATCACCGACTATACGAAACTAATCATACTTTATGGGTTCTAGACTT
i caeRem4.Crem_Contig24 I 1021 I 1085
e caePb3.Scfld02_62        85300 3286 +   783054 I
e cb4.chrX              21252144 1315 - 21540570 I
e caeSp111.Scaffold412    103212 2459 -   118955 I

a score=0.000000
s ce10.chrX               820956 1362 + 17718866  
e caePb3.Scfld02_62        85300 3286 +   783054 I
e cb4.chrX              21252144 1315 - 21540570 I
e caeSp111.Scaffold412    103212 2459 -   118955 I
e caeRem4.Crem_Contig24   576896 1085 -  1162296 I

a score=400.000000
s ce10.chrX               822318 76 + 17718866 TTGTGGCATTTGCGGCATTTGCGGAATTGGGTTCATGTTCAACGGGTAATGGGTCTGTGG-AGCAATGGAGTACGGA
s caeRem4.Crem_Contig24   577981 64 -  1162296 TTGTGGCACTTGATGGTGTTGTGGAATTGAGGGAAGGT------GTTGTTGAATTTGTTGCGGCATTTGA-------
i caeRem4.Crem_Contig24 I 1085 C 0
e caePb3.Scfld02_62        85300 3286 +   783054 I
e cb4.chrX              21252144 1315 - 21540570 I
e caeSp111.Scaffold412    103212 2459 -   118955 I

a score=-3372.000000
s ce10.chrX               822394 150 + 17718866 -TGTGAAACCCCTGGGTTATGTGGCG---------------CCTGATGTGG---GAGAGGATGGGCAAACGTTGCGCCAACTGAAGGCAATTGTTGAGGCATAGGCT---------GAGGCCTTGTGTGCATGTTCATCGGAGGC------------GGACGAATGGAAGCTGGTGGTAT-AAAT--------CTACTC
s cb4.chrX              21253459 161 - 21540570 -TGTGGAA---CAGGAT---GAGGCATCATCTGATGTTGTGATTGATGCGGTGACATCTGGTGGACCGTCATCGGC---------------TGTTGAGGCATTTGTTTTT------GAGACATTGGATTAAGTGACATCGGTGGCAATGAATGAAGGGGCGGAATGGAAT--GGTGCTGCGGAAT--------GGAATG
i cb4.chrX              I 1315 C 0
s caeRem4.Crem_Contig24   578045 157 -  1162296 TGATTATA---CTGGGT-AGGAGGCA---------------ACTGGTGTGGCTGGATCTGATGGACAGGAATCGAATTG------------TGTGGTGGCATGTGATGCTGAACAGGAGGCATTTGAT-----------GATGCTGTGGATTTATCGGGAGAGATGGAATTGGATGTTGCGGGATCGTTGGTGGCAATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        85300 3286 +   783054 I
e caeSp111.Scaffold412    103212 2459 -   118955 I

a score=-10142.000000
s ce10.chrX               822544  84 + 17718866 --------------------------ATATCGTCAACTG-----GATCCTGCCGACCTGGAGTGTGGTAGCGTTGAT------------GTGGCGGCGG-CATATCT---CGATTGTCATGATCCCTCTGC---
s cb4.chrX              21253620  97 - 21540570 GTG----------------TTGCGGCACGGAGTGTGGCTGCATCACAGACGGTGGATTTGA---TGGTCTC-------------GGTTTGAAACGGTAATCATCCATTGACTGATGCCGTGGAGCG-----TCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   578202 119 -  1162296 TTGGTGGCCTTATATTCATTCGAGACATTTCATCTGCCG-----AAGGACGCCCGTTTGGA---TGGTACCGTTGAC---TAGGGGTGTGTGTTGATGA-CATCTCT---CTGCTGTCGTGACTCTCTCGCTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105671  90 -   118955 --------------------------ATATCGTCA---------ATCGATGACTGAT--GA---TGATATCGGTGGCCGTTGGTGGAGTGAGGCGTTGC-CATTTCT---CTGCTATCGTGACTTTCGCGATGT
i caeSp111.Scaffold412  I 2459 C 0
e caePb3.Scfld02_62        85300 3286 +   783054 I

a score=39632.000000
s ce10.chrX               822628 59 + 17718866 CCAACAATCATAGTTCCAATGACAATTTCGTAGTGATAGGGATTCACGCATACCTGTAA
s cb4.chrX              21253717 59 - 21540570 CCAACAATCATTGTTCCAATAACAATTTCGTAGTGGTAAGGGTTCACACAAACCTGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   578321 59 -  1162296 CCAACTATCATAGTTCCTATCACTATTTCATAGTGATAAGGATTCACACATACCTGGAA
i caeRem4.Crem_Contig24 C 0 I 439
s caeSp111.Scaffold412    105761 59 -   118955 CCAACTATCATTGTTCCAATCACAATTTCGTAGTGATAAGGGTTCACACACACCtgaga
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        88586 59 +   783054 CCAGACACCATTGCTCCGGTTACAATTTCGTAGTGATAGGGATTCACACAGACCTGAAA
i caePb3.Scfld02_62     I 3286 C 0

a score=-18.000000
s ce10.chrX               822687 3 + 17718866 GGC
s cb4.chrX              21253776 3 - 21540570 AGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    105820 3 -   118955 aaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        88645 3 +   783054 AAC
i caePb3.Scfld02_62     C 0 I 260
e caeRem4.Crem_Contig24   578380 439 -  1162296 I

a score=145.000000
s ce10.chrX               822690 2 + 17718866 CT
s cb4.chrX              21253779 2 - 21540570 CT
i cb4.chrX              C 0 I 1091
s caeSp111.Scaffold412    105823 2 -   118955 at
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        88648 260 +   783054 I
e caeRem4.Crem_Contig24   578380 439 -  1162296 I

a score=-2834.000000
s ce10.chrX               822692 141 + 17718866 AATATTCATATTAAAACTTTTAAAAGTCACATCTTCTCAACATTAGGCAATCAACTTAATCAAACAAAGGTCACAGAGTTAACCGAATAAGGGAAGAAGCTAACATGTGCCACATCACATCAAAGGAAAAATGAAACAATT
s caeSp111.Scaffold412    105825  56 -   118955 agtg-----atTGATTCTTTCTG--TTCAGGTTTTCTTGATG------------------CATACAGA----------------------------------ACATATGTTTTAT--------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        88648 260 +   783054 I
e cb4.chrX              21253781 1091 - 21540570 I
e caeRem4.Crem_Contig24   578380 439 -  1162296 I

a score=0.000000
s ce10.chrX               822833 12 + 17718866 CACACTTACTTC
e caePb3.Scfld02_62        88648 260 +   783054 I
e cb4.chrX              21253781 1091 - 21540570 I
e caeSp111.Scaffold412    105881  0 -   118955 C
e caeRem4.Crem_Contig24   578380 439 -  1162296 I

a score=86568.000000
s ce10.chrX               822845 138 + 17718866 ACCTACCATGTCACTTTTCATTTCAAATGCGTGCTTGCAGTGGTCCACATGACGCGTTTCGTTTTTTGTCATTTCATTAAACCTCCACAGTTTGCCATAGACTACGTGAGGGAAACCTTTTCTTCCGTGGACCTGTAA
s cb4.chrX              21254872 138 - 21540570 ACTCACCGCATCAGTTTTCATTTCAAACGCGTGCTTGCAATGATCAACATGACGCGTCTCATTTTTGGACATCTCCGAGTAACGCCATAATTTTCCATAGACCACATGGGGGAATCCTTTTTTGCCGTGAACTTGTAA
i cb4.chrX              I 1091 C 0
s caeRem4.Crem_Contig24   578819 138 -  1162296 ACTCACCGcatcagttttcatttcaaacgcGTGCTTGCAATGATCAACGTGACGCGTTTCGTTTTTCGTCATCTCCGAGAATCTCCACAGTTTCCCATAAACAACGTGTGGGAATCCTTTCCGTCCATGAACCTGTAA
i caeRem4.Crem_Contig24 I 439 C 0
s caeSp111.Scaffold412    105881 138 -   118955 ACTTACCAAgtcacttttcatttcaaaggCATGTTTGCAATGGTCCACATGACGAGTTTCATTCTTAGTCATTTCTGAGAATCTCCAAAGTTTGCCGTACACCACATGAGggaatcccttttttccatgaACTTGTAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        88908 138 +   783054 acctaccaagtcacttttcatttcaaatgcaTGTTTACAGTGATCGAGATGAcgagtttcatttttcgtcatATCCGAAAATCTCCAGAGCTTTCCATAAACCACGTGtggaaatcctttttttccatgaacCTGCAA
i caePb3.Scfld02_62     I 260 C 0

a score=151.000000
s ce10.chrX               822983 3 + 17718866 TTT
s cb4.chrX              21255010 3 - 21540570 TCT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        89046 0 +   783054 C
e caeSp111.Scaffold412    106019 0 -   118955 C
e caeRem4.Crem_Contig24   578957 0 -  1162296 C

a score=0.000000
s ce10.chrX               822986 191 + 17718866 GTATGGAGTTTGTGGGTACTTTGATATCATAAGCTGGTCTAATACAAGTTTCATAATGAAACGTCTCAAAATAAATTCCAAAACTTTTAAAAGTCGGATCATTTATCTAGCGTAGGTTCGTTGAAAGATCATAATTTAATGTCTATAGGCTCAAAATGTGTCCTAGAAATTTTTTTTGATCTCACCTGTAA
e caePb3.Scfld02_62        89046   0 +   783054 C
e cb4.chrX              21255013   0 - 21540570 C
e caeSp111.Scaffold412    106019   0 -   118955 C
e caeRem4.Crem_Contig24   578957   0 -  1162296 C

a score=1158.000000
s ce10.chrX               823177 3 + 17718866 CCG
s caeRem4.Crem_Contig24   578957 3 -  1162296 CCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106019 3 -   118955 ACG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        89046 3 +   783054 CCG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21255013 0 - 21540570 C

a score=62048.000000
s ce10.chrX               823180 125 + 17718866 GCCATCAAGTGTCCTTGGAATTGTAATGCAACCGGTATATTTTGTACCTTTTGAAAGAACCACATCAATCAGGTTCTGGAGATCATTCTTCTTATCCTTCAATTTTTTCACCAGGGACTCGCAAG
s cb4.chrX              21255013 125 - 21540570 ACCGTCCAATGTTCTTGGAATCGTGATGCACCCTTGATATTTAGCTCCTTTTGTGTTCACAACGTCGATCAGATTTTGAAGATCGTGCTTCCTATCTTTCAGCTTCTTCACCAACGACTCACATG
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig24   578960 125 -  1162296 TCCGTCAAGCGTTCTTGGAATTGTTATGCAACCAGTGTATTTTGTGCCTTTTGTATGTACCACGTCGATAAGATTCTGGAGATCGTGTTTTTTGTCCTTTAGTTTCTTGACAAGAGATTCACATG
i caeRem4.Crem_Contig24 C 0 I 403
s caeSp111.Scaffold412    106022 125 -   118955 ACCATCCAACGTTCTTGGAATAGTGATGCATCCGTTGAAATCgcttccctttttttcaaccaCATTTATAAGATTTTGAAGGTCATGTTTCTTGTCTTTCAGCTTTTTCACCAATGATTCACACG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        89049 125 +   783054 GCCATCCAAGGTTCTTGGAATTGTAATACATCCAGTGAACTTTTTCCCTTTCGAATGAACCACGTCTAGGAGATTTTGTAAGTCATGCTTCTTATCCTTCAATTTCTTAACCAGTGATTCGCAAG
i caePb3.Scfld02_62     C 0 I 45

a score=38207.000000
s ce10.chrX               823305 122 + 17718866 CTTTTTGGTCGAACTCTCGATCAATATTGTTT---TTGACCAAGTTCAACGATAATCGATTTCGTTTTGTCCGATACGCATTCAGTTGTATGAGTTCACTTTCTTTTAACTGAAAATGCA-------ATATT--
s cb4.chrX              21255183 120 - 21540570 CCTTTTGATCAAACTCTCTATCCGGAGTAGAC---TTGATCAAATTGAGAGACAGACGATTACGTTTGGTGCGATATGAATTAAGCTGATTAAGTTCCGACTCTTTGAGCTGAAACAA---------ATGTT--
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig24   579488 129 -  1162296 ctttttgATCAAACTCTCTATCTGGATTGAGC---CTGACCAAGTTAAGAGATAATCTGTTCCGCTTCGTTCGGTATGCATTGATTTGTTGTAGCTCATTTTCTTTGAGCTGAATAAATACccatttttatt--
i caeRem4.Crem_Contig24 I 403 C 0
s caeSp111.Scaffold412    106147 122 -   118955 CTTTTTGATCGAACTCTCTTTCTGCATTGTTC---TTGATGTGATTCAAAGACAACCTGTTTCGTTTTGTACGATAAGCGTTGATTTGACTGAGCTCTTGTTCTTTCAACTAAAAACG---------CTAAACT
i caeSp111.Scaffold412  C 0 I 20
s caePb3.Scfld02_62        89219 124 +   783054 CTTTCTGATCGAATTCTCTATCTACATTGTTCGCTTTTACAAGGTTTAATGACAAACGATTCCTCTTTGTCCGGTACATGTTAACTTGATGCAATTCGAGTTCCttgagctgaaaaat---------ccacat-
i caePb3.Scfld02_62     I 45 C 0

a score=-4265.000000
s ce10.chrX               823427 19 + 17718866 GTAATCAGTACTACAAACT------
s cb4.chrX              21255303 16 - 21540570 ---------ACTAGGTAATAAAACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   579617 16 -  1162296 ---------gcaaaacACTGAATCA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        89343  4 +   783054 -------------------aaat--
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    106269 20 -   118955 I

a score=33528.000000
s ce10.chrX               823446  92 + 17718866 TAAGTATT-------------------TACCGTTCTATAATACATCAAATATTCTACAATTTTGTTTGGCGGCGCACTAGCGTCGGGAACTTCGATCTTTTTCCGTGCTTC
s cb4.chrX              21255319  96 - 21540570 CGAACGTT---------------GCCGAACCGTTCGATGATACATCAAAAACTCGACAATTTTGTTGGGCGGAGCACTTGCATCTTGCAGTTCTACCCTTCTTCGGAACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   579633  91 -  1162296 TG-ACG-------------------CATACCGTTCTATTATACATTAAAAATTCCACTATTTTATTAGGCGGAGAACTAGCATCCGGtacttctaatttttttctgtactC
i caeRem4.Crem_Contig24 C 0 I 13
s caeSp111.Scaffold412    106289  92 -   118955 -CAAT------------------AACCTACCGTTCTATTGTACATCAgaaattcaacaattttGTTTGGAGGTGAACTGGCATCAGGTacttccatcttttttcttggatc
i caeSp111.Scaffold412  I 20 C 0
s caePb3.Scfld02_62        89347 108 +   783054 tgaatattttccctttttttttcaactaaccGTTCTATTGTACATCAAGAACTCAACAATTTTGTTAGGCGGAGCACTTGCATCCGgcacttcca---tttttttcgaatt
i caePb3.Scfld02_62     C 0 C 0

a score=-3298.000000
s ce10.chrX               823538 13 + 17718866 ATCTACTGCTGGT------
s cb4.chrX              21255415 12 - 21540570 -------GTCGGGGTTGTT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold412    106381 13 -   118955 -TTCAATgccaagt-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        89455 13 +   783054 -ttcaattccaaac-----
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   579724 13 -  1162296 I

a score=22553.000000
s ce10.chrX               823551  67 + 17718866 TTTCCAAGCTTCAACACATCCAAATCGTACTCGGTCATATTTGTGTTTTTTGTGTCAAC------------------------TGAAAATA------------
s cb4.chrX              21255428  67 - 21540570 TTCCCGTGCTTCAATACATCCAAATCGTATTCCGTCATTATTGTGTTTTTGACATCGAC------------------------TGAAAATA------------
i cb4.chrX              I 1 I 171
s caeRem4.Crem_Contig24   579737  67 -  1162296 TTTCCATACTTTAACACATCCAAATCGTGTTCCGTCATTATTGTGTTTTTGGTatcgac------------------------tgaaaata------------
i caeRem4.Crem_Contig24 I 13 I 48
s caeSp111.Scaffold412    106394 103 -   118955 tttttttgtttcaggatGTCTAGCTCGTATTCCGTCATGACAGTGTTCTTGACATCGacttaaatttaaaaattttacatttGTGAAGAAACAACATCAACAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        89468  78 +   783054 tgCTTATGTTTCAAATTGTCCAATTCATATTCAGTCATTATCGTAGTTTTGAGGTCAAC------------------------TGTAAAAGAGATATCAG-AA
i caePb3.Scfld02_62     C 0 C 0

a score=-29827.000000
s ce10.chrX               823618  28 + 17718866 --------------TAT---------TAAG--TTCTTTT------------------------GCTCACACTTTTTT--------------------------------------------------------------------------------------------
s cb4.chrX              21255666  36 - 21540570 --------------caCGGA------TATCCGTTCCTTA---------------------CACCTTTGAGCTTTTTC--------------------------------------------------------------------------------------------
i cb4.chrX              I 171 I 16
s caeRem4.Crem_Contig24   579852  34 -  1162296 --------------tatcaa------taat--ttttttg---------------------cgaatttccattttttt--------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 I 48 I 147
s caeSp111.Scaffold412    106497 167 -   118955 TGTGAAGTTCACTATATTCATAGTtctaat--ttaattttaaaaattttacagAAGACCTCAAGTTTCTATCTATTCTCGGAAAAAGGTTATcgccaaaaaacaaaacggtGATATTTCAGTAGCCGCTACTGTATAATAATACTTCAGCTTGTCGATCTGATTAGTTT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        89546  87 +   783054 TGCGAAGTAGAGAGTATTTA------TAAT--TTATTCT---------------------------------TATGCtcg----atggtttt------------------tgaaattt-------------tttttgaaaatactaaa------tgttttgaaaatttt
i caePb3.Scfld02_62     C 0 C 0

a score=56984.000000
s ce10.chrX               823646 172 + 17718866 TGCCACTTACATAAATCTGGATCCGGGTAGTTGACACCATCTTCCGGGTCATCATCCTGACTGTCTGGATCCAAATATGGCGGGAT---TTCCATTTTAATACCACTCCGTTGTAGAATCTTT---GTAGTTGTATTCACTGGTGACATCATCGGTGTGTGCTCGTCGGGAACTAGAA
s cb4.chrX              21255718 172 - 21540570 TAAAACTTACACAAAACGGGTTCCGGATAGGTCACTCCAGCTTCTGGATCGTCATCCTGGCTATGTGGATCAAGAACCGGG---ATCAATTCTAATTTGATGTTAGCACGATGAACAGTCTTT---CCAGAAGTACTCGCAGGCGACATCATAGGAGTTTGATCATCAATAACTGTAA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig24   580033 174 -  1162296 aaaaacatacagaGATCTGGATCCGGATAAGACACTCCTTCTTCCGGTTCCTCCTCGTTACATTCTGGGTCTAGAAACGGAGACATCTGCTCCACTTTAACGCCGTTCCTATTCACGACTTTT---GTGGATGTGCTCACTGGTGACATCAGCGGGGTCTGATCATCGATaactg-aa
i caeRem4.Crem_Contig24 I 147 C 0
s caeSp111.Scaffold412    106664 172 -   118955 TTGGACTTACATAAATCTGGGTCTGGATAGAGAACTCCATCTTCGGGGTCATCATCGTGACTATCTGGGTCCAAGTATGGCGGCAT---CTCTACCTTAATTCCATTTCGATGCA---TTTTGCCACCGGATGTGCTCACCGGTGACATCAGAGGAGACTGGTCATCCGTTACTGAAA
i caeSp111.Scaffold412  C 0 I 133
s caePb3.Scfld02_62        89633 172 +   783054 ccgaactTACACAAAACTGGTTCCGGATATTTAACTCCGCTTTCTGGATCTTCGTCAAGACCATCCGGATCTACAGTCGGTCCCATAACATCTGCTTTTATCCCATTTCTGTGCA---TTTTG---GTTGATGTGCTAACTGGTGACATCATTGGAGTTTGGTCATcaacaactggaa
i caePb3.Scfld02_62     C 0 C 0

a score=1112.000000
s ce10.chrX               823818 5 + 17718866 GAGAA
s cb4.chrX              21255890 5 - 21540570 TAGGA
i cb4.chrX              C 0 I 331
s caeRem4.Crem_Contig24   580207 5 -  1162296 taaaa
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62        89805 4 +   783054 -aaaa
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    106836 133 -   118955 I

a score=-1421.000000
s ce10.chrX               823823 31 + 17718866 GTTGCTATTAGCTTCATGGT-------CAGAGAGAAAT-
s caeRem4.Crem_Contig24   580213 22 -  1162296 --cattatgaaat--------------ctgagaaaaat-
i caeRem4.Crem_Contig24 I 1 I 34
s caePb3.Scfld02_62        89809 31 +   783054 --------gaaattgttggTTGTATGCTTAAGGAAAATT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21255895 331 - 21540570 I
e caeSp111.Scaffold412    106836 133 -   118955 I

a score=-524.000000
s ce10.chrX               823854 19 + 17718866 AAGGTTTGATAAGCAACGA
s caePb3.Scfld02_62        89840  2 +   783054 -----------------GC
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21255895 331 - 21540570 I
e caeSp111.Scaffold412    106836 133 -   118955 I
e caeRem4.Crem_Contig24   580235 34 -  1162296 I

a score=5043.000000
s ce10.chrX               823873 24 + 17718866 AATTTGGCAACAATT-CGCTTATCA
s caeRem4.Crem_Contig24   580269 24 -  1162296 aatttgGCAACATTT-CTCTTATCA
i caeRem4.Crem_Contig24 I 34 C 0
s caePb3.Scfld02_62        89842 25 +   783054 AATTTGGCAACATTTGCTCTTATCA
i caePb3.Scfld02_62     C 0 I 420
e cb4.chrX              21255895 331 - 21540570 I
e caeSp111.Scaffold412    106836 133 -   118955 I

a score=-2004.000000
s ce10.chrX               823897 161 + 17718866 AT----ACGTGTGT-TAGTGACTGCCAGACGGTAAAC----------------------ATCATGAG--------GTTCGTGTTGAAATTTTAGATTTTTTGTTGGCAACAAATTCTTTTGAACCTTCTATTGCACCATTT---------ATGCATCATA--TTCAACGTTTTTTTTTATTTTCAAGCTATACTACTATGTTCGA---CG
s caeRem4.Crem_Contig24   580293 210 -  1162296 GTTGTAAAGTGTTTACAAAAATCGTGAAACTGGAGACGATTTGTATTTGAGTTCTGTCAATTCTGAGTTGtttattttcctattcaaatttttacatttttcctttttttatatattttttcacttcaaaaagcAACATTTCAATAACTCCTGCACTAGAATCTCTAGGCATGCTAAGCTTTTCAAATAACACTTTTTCGGCCCATTCCC
i caeRem4.Crem_Contig24 C 0 I 5
e caePb3.Scfld02_62        89867 420 +   783054 I
e cb4.chrX              21255895 331 - 21540570 I
e caeSp111.Scaffold412    106836 133 -   118955 I

a score=-785.000000
s ce10.chrX               824058 5 + 17718866 -----TTATT
s cb4.chrX              21256226 5 - 21540570 TT---TTG--
i cb4.chrX              I 331 C 0
s caeRem4.Crem_Contig24   580508 8 -  1162296 TTAAATTG--
i caeRem4.Crem_Contig24 I 5 C 0
s caePb3.Scfld02_62        90287 5 +   783054 TT---TTG--
i caePb3.Scfld02_62     I 420 C 0
e caeSp111.Scaffold412    106836 133 -   118955 I

a score=20418.000000
s ce10.chrX               824063 30 + 17718866 TACCTTCAGTTTTCGGAGTGATTAGCTTCA
s cb4.chrX              21256231 30 - 21540570 TACCTTCAACTTTTGGAGTGATGAGTTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   580516 30 -  1162296 TACCTTCGACTTTTGGAGTGACGAGTTTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106969 30 -   118955 TACCTTCCATTTTCGGAGTGATGAGTTTTG
i caeSp111.Scaffold412  I 133 C 0
s caePb3.Scfld02_62        90292 30 +   783054 TACCTTCCGTTTTTGGAGTGATGAATTTCA
i caePb3.Scfld02_62     C 0 I 445

a score=546.000000
s ce10.chrX               824093 1 + 17718866 A
s cb4.chrX              21256261 1 - 21540570 A
i cb4.chrX              C 0 I 233
s caeRem4.Crem_Contig24   580546 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106999 1 -   118955 A
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        90322 445 +   783054 I

a score=1050.000000
s ce10.chrX               824094 5 + 17718866 CCCGC
s caeRem4.Crem_Contig24   580547 5 -  1162296 GCCGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    107000 5 -   118955 GCCGC
i caeSp111.Scaffold412  C 0 I 3706
e caePb3.Scfld02_62        90322 445 +   783054 I
e cb4.chrX              21256262 233 - 21540570 I

a score=666.000000
s ce10.chrX               824099 29 + 17718866 CATTGAATGCCAATGACTTGTTGGCATCA
s caeRem4.Crem_Contig24   580552 26 -  1162296 ---TGAAAGGCAGTGATAGGTTTGTACTA
i caeRem4.Crem_Contig24 C 0 I 1204
e caePb3.Scfld02_62        90322 445 +   783054 I
e cb4.chrX              21256262 233 - 21540570 I
e caeSp111.Scaffold412    107005 3706 -   118955 I

a score=0.000000
s ce10.chrX               824128 968 + 17718866  
e caePb3.Scfld02_62        90322 445 +   783054 I
e cb4.chrX              21256262 233 - 21540570 I
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   580578 1204 -  1162296 I

a score=90.000000
s ce10.chrX               825096 27 + 17718866 GCAGATTAAAACCTGCTCCAGCCCCGA
s cb4.chrX              21256495 27 - 21540570 GCATATTGAAAGTCACATTATGACCTT
i cb4.chrX              I 233 C 0
e caePb3.Scfld02_62        90322 445 +   783054 I
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   580578 1204 -  1162296 I

a score=8968.000000
s ce10.chrX               825123 48 + 17718866 GCAGGTTCCTCTCATATTCCTCTACATCAGGAATATCTTCCAATCCAT
s cb4.chrX              21256522 48 - 21540570 GAAGGCTCCTTTCATATGCCTCGATATCGGGAATGTCTTCCAGCCCGC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62        90767 48 +   783054 GTAAGTTCCGTTCATATGCTTCAATATCAGGAATGTCTTCCAATCCGT
i caePb3.Scfld02_62     I 445 I 3600
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   580578 1204 -  1162296 I

a score=-1620.000000
s ce10.chrX               825171 687 + 17718866  
s cb4.chrX              21256570 618 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62        90815 3600 +   783054 I
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   580578 1204 -  1162296 I

a score=4150.000000
s ce10.chrX               825858 306 + 17718866 AAGAGAAATAAAAAAAAGAACGTGTTCAAATACG-GGGTATTAAAAGTAATTTTTGACAGTCTATTA---ATAATAATAATTGAC---------AATTCGAAAATAA-------------------AAATAAAAATATCCCAAATTAAAAAAAAAAGAT-CGAAACCAAACCACTACTTGTTTCTTCGTCT---------TCTATCTC--TTTTTCTCGTTACGCACAC------TCTATCTCGCTCACTCTTAAACTACGTACGTGTGTCTGCGTCTCTTCGCCCAGCACACTATTTCATTGCTAAAAGTGTGTTGAGGTGGCAGTGCTCGCTGCAAAGAATCGATAAGTTGAGC
s cb4.chrX              21257188 324 - 21540570 ATTCATAATAG-----------------AATATTCTAGT-TTCAAAACGGTGAAGAGCA-TTCATAAAGTATCAAgataatttaa---------aattaaaaaaaaaatctcacagATACTGAGGTAATGAGGAAAAAACATATTCGTGGCAGAATGATGTTTATCTGAACCACCTCACATTATTCTCTCTCATTCTCTTTCTGTTTTGCTACTTCTCTCTGCGCGCTCAGCTTGTGTGGTTCTCTTACTCGAAAACCGCGCACGTGTGCAGAAGCCTCTTGCTTCCTCTCGCTCTCTCCCTGATATATGCGAAT--AGGTAGCATAGCT--TTGAAGAGAATCGATAGGCACAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   581782 303 -  1162296 aaacaaaataGAGATTAGAAAGGATATAAATTTGTTAGTATTAAGAATAATCTCAGGCT-TCGCTAA---ATCGGGATTTTCTAACTCCTGacgaatcaaaaaagaa-------------------aaaaagaaaaaagtcgttttttcttcaaaagatGTTACTCCGAACCACTACTCGTTATTCGC------------TAGGTTTT--TGCTACTCTCTGCGCATACAAA-CACGTATCTCTCTTCCTCTAAAACCGCGCACGTGAATCTATGTCTCTTGCTCTTATGCGCTATCTTTCAAATATA-------------ACGGTGGCT--GTGCCAAGAATCGATAACTTGAGC
i caeRem4.Crem_Contig24 I 1204 I 3864
e caePb3.Scfld02_62        90815 3600 +   783054 I
e caeSp111.Scaffold412    107005 3706 -   118955 I

a score=128.000000
s ce10.chrX               826164 5 + 17718866 GTAGT
s cb4.chrX              21257512 5 - 21540570 AAAGT
i cb4.chrX              C 0 I 2748
e caePb3.Scfld02_62        90815 3600 +   783054 I
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=0.000000
s ce10.chrX               826169 3084 + 17718866  
e caePb3.Scfld02_62        90815 3600 +   783054 I
e cb4.chrX              21257517 2748 - 21540570 I
e caeSp111.Scaffold412    107005 3706 -   118955 I
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=2325.000000
s ce10.chrX               829253 51 + 17718866 TTATCCAGAAAAGTTATTGTCCTGTCGAAAGAACAATCACGGTGACCTTCT
s caeSp111.Scaffold412    110711 51 -   118955 TTGTTCGGAAGAAATACTTCCTTGACAAAAGAACGATCGAGATGACCTTTT
i caeSp111.Scaffold412  I 3706 I 1317
e caePb3.Scfld02_62        90815 3600 +   783054 I
e cb4.chrX              21257517 2748 - 21540570 I
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=0.000000
s ce10.chrX               829304 858 + 17718866  
e caePb3.Scfld02_62        90815 3600 +   783054 I
e cb4.chrX              21257517 2748 - 21540570 I
e caeSp111.Scaffold412    110762 1317 -   118955 I
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=268.000000
s ce10.chrX               830162  90 + 17718866 TTTCTATCAATTGAAAATATTGTGTTTCCAGCCATTTCCTAATACATTTGATTGTAGTTG--TATTCTATGTACATTTCCAGTAACGTACTG---------------
s cb4.chrX              21260265 107 - 21540570 TCTTTGTTTATTGATTATACAGTGTTTTCTCTCATGCCTAGATTCATTATGTTCCGcctaattttttcatgaaaacatCAGATCACATATTGTTATCAAAACCCCTA
i cb4.chrX              I 2748 C 0
e caePb3.Scfld02_62        90815 3600 +   783054 I
e caeSp111.Scaffold412    110762 1317 -   118955 I
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=-2109.000000
s ce10.chrX               830252  99 + 17718866 CTATACACATTTCCCATGCCATTTCGAGCCG----TTTCACCTGCTCGAAAACATA-CAATTTCTTGGA---CAGAAAAC-----------------GGAGAGCGAAAA------------AATCTAGAAACCCC--------A
s cb4.chrX              21260372 105 - 21540570 CTATACACATTCCCCACGGCGTTTCGCAAAT----ATTCACCTGTCC-----CGCC-CagctttgagaaaattgaaaaaccgaGCCTACGTCC----AATAGCATGAAA------------ACCTCAAGCA-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    112079  87 -   118955 CTATATAAAATTCCCTCGACA--------------TTTCACTAGCTC-----CGCCTCAACCCCTTCGTGATTGGAAAAC-----------------AACAGCCACAGA------------AATCAGTGAAACCC---------
i caeSp111.Scaffold412  I 1317 C 0
s caePb3.Scfld02_62        94415 137 +   783054 CTATACATAATTCCCATGCCATTTTGCCTAACTGGTTTCACCTGCTC-----CGCCTCAACTGCTTGAT-ATTATaagatttctttctctttctgagAAAGGCCCGAGATCATTTTTCCCCAACCCAAAAAATCCTACTAcca-
i caePb3.Scfld02_62     I 3600 C 0
e caeRem4.Crem_Contig24   582085 3864 -  1162296 I

a score=50518.000000
s ce10.chrX               830351 297 + 17718866 AGACTTAATAACA-------GCCCACTG-GTTTTCTCGTTTTGTCA-----------GCTAACGCACCGGCCGTTTT---CTCGCAATCACCATGGTTACCTTCCACTAGTTTGTGTGCTGAAAGACAACCTCTAGAACCGGTTATCACTGAGAGAGAGAAAGCTAGTTAGCCGCGGTTTGCAAG-AATGTTTGAGAAAGTGAAAGAAGTCGCTCTTCCACAAGGTACAGTGTCTCCATGGCCATCAAATCTGGCTGTTTGCTGGTTGGACACTAGAAATATTACCTACGTGGCAGTCATCCAATCTAATAATGTAAG-TT
s cb4.chrX              21260477 278 - 21540570 AAAATTAATAATATCTCAGGTGACACAACGTT---TTGTCTC-CTC-----------AGTACTCTCCTTCTCTTTTCACTGCCG--ATCGCCATAGCAACCCCGCA------TCGGCTCTGAAAACCAAACACA-------------------CGCCAAATATCAGGCGTGACTTCCTTTCTAatcaatgtttgaaaaaacaaaagaagttACTCTTCCACGAGGAACTATATCACCATGGCCATCCAACCTGGCAGCATGTTGGTTGGACACCAGAAACATTACATATGTTGCAGTTATTCAAGCGAACAATGTAAg-tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   585949 265 -  1162296 AAAATTAATAATA-------GGCCACTG-GTT---TCGTTTCGTTC-----------AGTGCCACACCCCTCTGTTT-------------CCATAGCAACAAT---------TTGAagctgaaagaaaagaaaa--------tagcaGCAGGTTGTCAGTTATCAAA-GTCTCGCTGTTGCTGGT--ATGTTTGAGAAAGTGAAAGATGTACCTCTTCCGCAAGGAACTGTGTCACCATGGCCTTCCAATTTGGCAGTGTGCTGGCTCGACACAAGGAACATCACGTATGTCGCAGTTATTCAGTCTAACAATGTaag-tt
i caeRem4.Crem_Contig24 I 3864 I 340
s caeSp111.Scaffold412    112166 255 -   118955 -GAATTCATAATA-------TCTCACTG-GTT---TCATTTTGCTC-----------ACTTTCACACTCCCCGACTTTCTCTTGC-GTCACCATAGCAacttt----------------caaaaccaaaa-----------------------ggCCAGATTTGAAATCATCCAGTGTTGTTTTG--ATGTTTGAGAAGGTGAAAGAGGTGACTATTCCCTATGGAACCGTTTCTCCATGGCCAGCTAATTTAGCAGTTTGCTGGCTAGACACCAGAAATATTACTTATGCAGGCAtcattcaaaactcaaatgTAAG-TC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        94552 257 +   783054 aaaattaataata-------acTCACTG-CAT---TCGTTTGGCTTTGTCAGCAAAACCTTCCACACT-CTCGAC--------GC-GTCACCATAGCAACCTT-------------TGCTGAAACCGA----------------------------CAAAGCTGAAAAGACTTTTGATaagtgaa--atgtttgaaaaagtgaaacacGTTCATCTACCTACTGGAACTGTGTCTCCATGGCCGTCTAACTTAGCTGCTTGCTGGCTTGACACTCGCAACATCACTTACGTAGCTTTAATTCAAACTAAtaatgtgagttt
i caePb3.Scfld02_62     C 0 C 0

a score=1270.000000
s ce10.chrX               830648 5 + 17718866 GTTTT
s cb4.chrX              21260755 5 - 21540570 gtctt
i cb4.chrX              C 0 I 137
s caeSp111.Scaffold412    112421 5 -   118955 ATTGT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        94809 5 +   783054 atttt
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   586214 340 -  1162296 I

a score=-19.000000
s ce10.chrX               830653 3 + 17718866 GAT
s caeSp111.Scaffold412    112426 3 -   118955 TAT
i caeSp111.Scaffold412  C 0 I 193
s caePb3.Scfld02_62        94814 3 +   783054 ttt
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21260760 137 - 21540570 I
e caeRem4.Crem_Contig24   586214 340 -  1162296 I

a score=393.000000
s ce10.chrX               830656 50 + 17718866 GC-TCAATGAGCACAATGTGCTAATCCTTTTTTGTTGCTATAGCTACTGAT
s caePb3.Scfld02_62        94817 43 +   783054 gcattgatGAA--------ACTGAGCCTATTTTGATTCTGGTCTCACTGAT
i caePb3.Scfld02_62     C 0 I 470
e cb4.chrX              21260760 137 - 21540570 I
e caeSp111.Scaffold412    112429 193 -   118955 I
e caeRem4.Crem_Contig24   586214 340 -  1162296 I

a score=0.000000
s ce10.chrX               830706 873 + 17718866  
e caePb3.Scfld02_62        94860 470 +   783054 I
e cb4.chrX              21260760 137 - 21540570 I
e caeSp111.Scaffold412    112429 193 -   118955 I
e caeRem4.Crem_Contig24   586214 340 -  1162296 I

a score=60.000000
s ce10.chrX               831579 2 + 17718866 TC
s caeRem4.Crem_Contig24   586554 2 -  1162296 tt
i caeRem4.Crem_Contig24 I 340 C 0
e caePb3.Scfld02_62        94860 470 +   783054 I
e cb4.chrX              21260760 137 - 21540570 I
e caeSp111.Scaffold412    112429 193 -   118955 I

a score=29.000000
s ce10.chrX               831581 1 + 17718866 T
s cb4.chrX              21260897 1 - 21540570 T
i cb4.chrX              I 137 C 0
s caeRem4.Crem_Contig24   586556 1 -  1162296 c
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        94860 470 +   783054 I
e caeSp111.Scaffold412    112429 193 -   118955 I

a score=115655.000000
s ce10.chrX               831582 373 + 17718866 CAGATTCACATCGGAAGTTGGGACAATAAAGCTGAGACAGAAGTAACTTGGGAAACAATCCAAACATCTGAGCCAGTTTCCATC---ACCGAGAAAATCATCGACGTCACTTCGGTAT-TAAATGAAAAATTTTCGCAGTGGTATTATTC------------AAGTTTTTAGGTCGGGCTAGTTCATCCAAACGCAAGAAACTTTCCAATAGTAATCGTAGGGTCAACTCGATTTATTCATGTTTACGACGCCAAGAAAGTTACCCAAAAACCATTGTTCTCAATTGCGTTGGGTGTGGCGTTGAGAGACTACGTCCCCGCGGTTGGGAAAGATGTAGGACCGTATTGTAGAGGTGTTACCTGTAACGATAATGCTGTATTGGTTGGTG
s cb4.chrX              21260898 368 - 21540570 TAGGTGCACATCGGCCATTGGGATAACAAAGCGGAGACTGAAGTTACTTGGGAAACAATACAAACTTCCGAACCGGCCAGCTCT---AGCGATAAGCTTGTTGATGTGACAACGGTAA-ATAGCATTTTCTTGTAA------------GTGTTAGGC-----AATAGTTCAGATTGGTCTGGTTCATCCGAACGCGCGAAACTTTCCGATTGCTATTGTTGGATCCACTCGTCATATTCATGTTTACGATGTTAAGAaagtatctcaaaaaccgctTTTCTCGCTAACACTTGCCAGCACACTACGGGAATATGCACCTTCCATAGGAAAAGATGTCGGACCTTATAGCCGCGGAGTGTCGTGTAATGATAATGCCATCCTTATTGGTA
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig24   586557 374 -  1162296 cagattcatgTCGGAAACTGGGACAATAAAGCGGAAACAGAAGTCAGTTGGGATACTATTGTCACTTCCGAGCCGTCAACTCCA---AACGAAAAAGTGATCGATGTGACTACGGTGA-TTTGCAAGTATCTATAA-----------TTTGAAAGACCCTTGAAATATTCAGGTTGGCTTAGTTCATCCAAACGCCAGAAACTTTCCCGTCGTAATCGTCGGCTCGGCACGATTTATTAACGTTTACGATGTGAAGAAGATAAGCCAGAAGCCATTGTTCTCAATTACGCTTGCATCTGCACTCAATGACCCAAAAACAGCTGTTGGAGGGGATGTCGCACCATACTGTAGAGGAATTTCGTGTAATGACAATGCTATTCTAGTTGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    112622 374 -   118955 CAGGTTCACATTGGGAGTTGGGACAACAAGACAGAAAGTGATGTTAGTTGGGATACCATTGCTATACCTGATCCTCCAATTGGC---AATGAAAAACTTATTGATGTGACTACGGTAGTTCTGTA--CAATTTCAGCC----tgtttttcagtaaa------aaaataGCAGGTTGGCCTGGTTCACCCTAACGCCAGAAACTTCCCAGTAGTGATTTTGGGAACAACTCGCTCTATTCATGTCTATGATGTGAAGAAGATCAGCACAAAACCTTTGTTCACGGTAATCCTTGCGATGTCTCTTAGAGATTATGAATCGAGCCAGGGGCGCGATGTTGGGCCGTATACAAGAGGAGTTTCTTGTAATGATAACGCTATTTTAGTTGGTA
i caeSp111.Scaffold412  I 193 C 0
s caePb3.Scfld02_62        95330 379 +   783054 CAGGTTCATATCGGAAGCTGGGACAACAAAGCTGAAACTGATGTTGTTTGGGACACAATAGCAATGCTAGAGCCACAAGGTTCTTCGAGCGACAAACTAACAGATGTTACTACGGTAA-TCAGTAATTGAcgacaaaa----tatttttcaacgaat-----CAAGTTTAAGGTCGGATTGGTCCACCCGAATGCCAGAAACTTCCCTATTGTGATTGTAGGAACAACTCGCACtataaatgtttttgattcaaaaaaaatttctcaaaaaccccttttttctatttcgcTTGCATCAACTCTAAGAGAGTATGTACCTAGTTGTGGTGGTGATGTGGGGCCGTATTGTAGAGGAGTTTCCTGTAATGATAACGCCATTTTGATTGGTG
i caePb3.Scfld02_62     I 470 C 0

a score=-1882.000000
s ce10.chrX               831955 17 + 17718866 AGTT----TGGTGGAAACGCC
s caeRem4.Crem_Contig24   586931 13 -  1162296 TGTT----TATCGTACT----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    112996 21 -   118955 AGATAAACTAGTATAATCTCT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        95709 17 +   783054 AGTT----CAGTCAAAACCCT
i caePb3.Scfld02_62     C 0 I 26
e cb4.chrX              21261266 17 - 21540570 I

a score=-2053.000000
s ce10.chrX               831972 3 + 17718866 GAT---
s caeRem4.Crem_Contig24   586944 3 -  1162296 --CAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113017 3 -   118955 ---GGG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        95726 26 +   783054 I
e cb4.chrX              21261266 17 - 21540570 I

a score=-202.000000
s ce10.chrX               831975 21 + 17718866 GTCGCTTAAGGAAATACATAC-------
s cb4.chrX              21261283 20 - 21540570 GTCACTTGAGATTATA-ATTT-------
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig24   586947 20 -  1162296 ATCTCTAGAGAATATA-ATAT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113020 18 -   118955 ---------GAGTATA-ATAAATGAGAT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        95726 26 +   783054 I

a score=41211.000000
s ce10.chrX               831996  99 + 17718866 ------ATTTAGGAACACATACCGGCGAGATTGTTGTCATCATGTGCAATGGGGACTCCAACTTCTCTAGTCGTAAAAACCTCAAGGTAAATGAGTTT-----TTTTAAA
s cb4.chrX              21261303 101 - 21540570 GTTGTTTTGAAGGAACACACACCGGCGAAATTGTGGTTATTATGTGCAATGGAGACTCCAATTTCACGAGccggaaaaatttgaaggt-------gTTATTGTTTTTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   586967  91 -  1162296 TTCACAATATAGGAACCCACACCGGCGAGATTGTTGTTATTATGTGCAATGGGGATTCCAACTTCACGACTCGTAAGAATTTGAAGGT-------ATT------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113038  91 -   118955 -------TATAGGAACACATACTGGGGAAATCGTTGTTATTATGTGCAATGGGGAAACCAGTTTTTCCAATAAGAAGAACTTGAAggt-------ttg-----ttttgaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        95752  92 +   783054 ------ATGAAGGAACGCATACTGGTGAAATCGTTGTAATCATGTGCAATGGAGATGCCAATTTTTCCACCCGAAAGAATCTGAAGGt-------ttg-----ttttgaa
i caePb3.Scfld02_62     I 26 I 20

a score=-806.000000
s ce10.chrX               832095 32 + 17718866 AACACTGCTCGTTGTGTTCTGCTCTATTAGTA
s cb4.chrX              21261404 11 - 21540570 -ACA--------------------TAGCTATG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    113129 12 -   118955 aaca--------------------tattatta
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        95844 20 +   783054 I
e caeRem4.Crem_Contig24   587058  0 -  1162296 C

a score=-3760.000000
s ce10.chrX               832127 87 + 17718866 GATTTTTGTTAGTGGGGAGTACCGAAAACAGGCTCTCATGCGCAGTAAACTCAGTCAAGGTGTATAAAGCAGTAAATTTGCAGTCAC
s cb4.chrX              21261415 13 - 21540570 AGTTTTTGT--------AGTA------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   587058 14 -  1162296 -GTTTTTGT--------AATATT----------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        95844 20 +   783054 I
e caeSp111.Scaffold412    113141  0 -   118955 C

a score=0.000000
s ce10.chrX               832214 33 + 17718866 TAAAAACGGAAAATTCTCATTTCACTGACAGAA
e caePb3.Scfld02_62        95844 20 +   783054 I
e cb4.chrX              21261428  0 - 21540570 C
e caeSp111.Scaffold412    113141  0 -   118955 C
e caeRem4.Crem_Contig24   587072  0 -  1162296 C

a score=71576.000000
s ce10.chrX               832247 480 + 17718866  
s cb4.chrX              21261428 349 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   587072 438 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113141 329 -   118955  
i caeSp111.Scaffold412  C 0 I 35
s caePb3.Scfld02_62        95864 353 +   783054  
i caePb3.Scfld02_62     I 20 C 0

a score=153.000000
s ce10.chrX               832727 5 + 17718866 ATAGT
s cb4.chrX              21261777 5 - 21540570 ACAAT
i cb4.chrX              C 0 I 28
s caePb3.Scfld02_62        96217 1 +   783054 ----T
i caePb3.Scfld02_62     C 0 I 46
e caeSp111.Scaffold412    113470 35 -   118955 I
e caeRem4.Crem_Contig24   587510 0 -  1162296 C

a score=0.000000
s ce10.chrX               832732 13 + 17718866 TGAGGGGGAGGGA
e caePb3.Scfld02_62        96218 46 +   783054 I
e cb4.chrX              21261782 28 - 21540570 I
e caeSp111.Scaffold412    113470 35 -   118955 I
e caeRem4.Crem_Contig24   587510  0 -  1162296 C

a score=-4455.000000
s ce10.chrX               832745 403 + 17718866 ATCGGAACTTAACAGAAA--ATCAGGTGAA------AAACTTTGGGATAGCTCAATCGGGAttgat--taaacaataaattcacttgtgggtcatcctcaaggcaattaaaaaaaatcggtaatggtggccgctagcaatctggaggtcacaagttcgagtccggactcgccccgctaggttcatccagcctctattgggaagtgaagtaatccaagactatcaaccacagtctccggctaggacgtggcctaaattgtagcccattgggattaccaccagccagtgtacctgactcccagatatgcagtgcatagtgcttgaagag-----cCCTTTATGGAAACATGACTGAAAACTCGGGCTTCTTCTCGATACTTTTTCTATTTTCATGCTTGTGAAAATGTTGCTTATAATAA
s caeRem4.Crem_Contig24   587510 258 -  1162296 --------TTATCAGATACCGTCCGGATAAGTCTccacattttgaaat-----------tattgatcATAAGTCACATTGTGATTAGTGTGTTCT-------------------------TAATTTCGGTCActataaat----------caaattttggtcag---------------------------tgtgTTTCAGAGTGTGTTACTATAA---------------------------------------------------GGAATTAT--TTAGTCATTGTAAATG-----CAGATCTGC------TTGTACCTAATAAGTTTGTCCCTTTAAAGTGATAT--CTGGAAAGTGGAAATC-------AGATTTAAgtaattt------ttgaggaaaacttccacattgtat
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        96218  46 +   783054 I
e cb4.chrX              21261782  28 - 21540570 I
e caeSp111.Scaffold412    113470  35 -   118955 I

a score=-496.000000
s ce10.chrX               833148  7 + 17718866 ---------TTTCTCA
s cb4.chrX              21261810  7 - 21540570 ---------TTACTCG
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig24   587768 16 -  1162296 tttttcacaatatttt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62        96218 46 +   783054 I
e caeSp111.Scaffold412    113470 35 -   118955 I

a score=136705.000000
s ce10.chrX               833155 321 + 17718866 CAGATAAATGCTCATTCAAGACCAGTGAATAGTGTTTCTGTCGCACCGGAAAGCGCATATGTCTTGACTTCTTCCGAGGATGGCACTTTTATCGTTTCGAAGCTTCACACAAGAAAACCACATGCTTATCAAG---------T---TAGTTCACAGAA-AGTCGAGAACATTTAGG---TATA-------CACAAAAAC--TCAATTTCAGGTTGAATACCGTTTCTCTGACAGCGATCCGTCCAACGTCATCATGGGAGCGCAATTCACAAATGGACGCGGGAGTGCAATTGCAATTGCCGCATTTGATAGCAACGTCTTGGTGATGTACAAGATTATCAAGAAA
s cb4.chrX              21261817 315 - 21540570 CAGATTAATGCTCACTCGAGACCAGTGAACAGCGTTTCCGTTGCTCCAGAAAGCGCGTATGTAATGACATCTTCTGAAGATGGCACTTTTATTGTGTCCAAACTTCACACACGAAAGCCACATGCGTATCAGG---------T-----GATTGGGGAAGACT--ATAACTTCAAGC---AAAT-------CATAACATC-----ATTTCAGGTGGAGTACCGTTTTTCCGACAGCGACCCATACAGCATTATCATGGGAGCTCAGTTCACCAATGGTCGTGGAAGTGCCATTGCTGTTGCCACATTCGACAGTTCCGAGATTATCATGTACAAAATAATCAAGAAA
i cb4.chrX              C 0 I 620
s caeRem4.Crem_Contig24   587784 315 -  1162296 caggttaACGCTCACGCAAGACCAGTAAACAGTGTTTCTGTTGCTCCAGAAAGTGCATATGTGCTCACAGCTTCAGAAGATGGAACTTTCGTTGTATCCAAACTTCATACAAGAAAGCCGCACGCTTATCAGG---------TTCCTAGATTTCAGAA-AGT--AAAACTCctaactgaaaat-------c-------t-----gttttagGTGGAGTACCGATTTTCCGATGCAGATGAGTACAGCATGATCATGGGGGCTCAATTCACTAATGGACGTGGTAGCGCTATTGCGACTGCTGCTTTCGACAACAACTGCCTGACTATGTACAAGATTGTCAAGAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113505 319 -   118955 CAGATCAACGCACACGCTAGACCAGTTAATTGTGTTTCTGTTGCGCCGGAAAGCGCATATGTTATGACTTCATCAGAAGATGGAACTTTTATCGTATCAAAACTACATACAAGAAAGCCTCACGCCTATCAAG---------T-------TTATATAA--------AACACTTAAT---AAAAATCTGTTCACAAAAATCGTTATTTTTAGGTTGAATACCGCTACTCTGACTCTGACCCATCGTCCATCATAATGGGTGCTCAGTTCACCAATGGCCGAGGAAGTGCAATTGCAGTTGCTTCTTTTGATAGTAGCACTTTGACCATGTACAAGATTATaaaaaaa
i caeSp111.Scaffold412  I 35 C 0
s caePb3.Scfld02_62        96264 312 +   783054 cagatagATGCGCATTCTAGACCAGTAAGCAGTGTATCGGTCGCACCAGAAAGCGCATATGTTTTGACTTCTTCTGAAGATGGCACATTCATTGTGTCAAAGCTTCATACTAGAAAACCCCACGCGTATCAAGTAAATTATAT-------TTACAGAT--------AA----TGAT---AAAA-------CACCAAAAC-----GTTTCAGGTAGAATACCGTTACTCTAATACAGATATGTCTACTATCATCATGGGTGCTCATTTCACCAATGGGCGTGGAAGTGCAATTGCTATTGCGTCTTTTGACAGCAACCATTTGGACATgtacaaaatcatcaaaaaa
i caePb3.Scfld02_62     I 46 C 0

a score=-1202.000000
s ce10.chrX               833476 7 + 17718866 ACTGCTG-----
s caeRem4.Crem_Contig24   588099 7 -  1162296 -----AGTAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113824 7 -   118955 CCTTCTG-----
i caeSp111.Scaffold412  C 0 I 101
s caePb3.Scfld02_62        96576 7 +   783054 ccttCAG-----
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21262132 620 - 21540570 I

a score=-1618.000000
s ce10.chrX               833483 12 + 17718866 TACCTGCTACAT------
s caeRem4.Crem_Contig24   588106 15 -  1162296 ---CAGCTCCTTCTACAT
i caeRem4.Crem_Contig24 C 0 I 643
s caePb3.Scfld02_62        96583 10 +   783054 ---CAGGTGGTCC-----
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21262132 620 - 21540570 I
e caeSp111.Scaffold412    113831 101 -   118955 I

a score=-761.000000
s ce10.chrX               833495 93 + 17718866 AATTATATTTTACTGTGTATCTTCAATTAATATATCTGTATTTGGCTTTTAATATGTTTAATAACAAAAAAACATTACACTCCATGTAGTCTA
s caePb3.Scfld02_62        96593 51 +   783054 -------TGTTACCG------------TAGTGGCTCCGCCTCCAGTTATAGATGCTTCT-----------------------CATATAATCCA
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21262132 620 - 21540570 I
e caeSp111.Scaffold412    113831 101 -   118955 I
e caeRem4.Crem_Contig24   588121 643 -  1162296 I

a score=-34548.000000
s ce10.chrX               833588 994 + 17718866  
s caeSp111.Scaffold412    113932 699 -   118955  
i caeSp111.Scaffold412  I 101 C 0
s caePb3.Scfld02_62        96644 764 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21262132 620 - 21540570 I
e caeRem4.Crem_Contig24   588121 643 -  1162296 I

a score=801.000000
s ce10.chrX               834582 9 + 17718866 AATACCTCC
s caeRem4.Crem_Contig24   588764 9 -  1162296 AATAcctca
i caeRem4.Crem_Contig24 I 643 C 0
s caeSp111.Scaffold412    114631 9 -   118955 ATGGCCTAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        97408 9 +   783054 ATGGCCGCG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21262132 620 - 21540570 I

a score=127388.000000
s ce10.chrX               834591 525 + 17718866  
s cb4.chrX              21262752 497 - 21540570  
i cb4.chrX              I 620 C 0
s caeRem4.Crem_Contig24   588773 504 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    114640 507 -   118955  
i caeSp111.Scaffold412  C 0 I 114
s caePb3.Scfld02_62        97417 483 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=986.000000
s ce10.chrX               835116 6 + 17718866 AGAATT
s cb4.chrX              21263249 5 - 21540570 -TAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   589277 6 -  1162296 Ggagtt
i caeRem4.Crem_Contig24 C 0 I 186
s caePb3.Scfld02_62        97900 6 +   783054 ATACTT
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    115147 114 -   118955 I

a score=-655.000000
s ce10.chrX               835122 4 + 17718866 -ATGT
s cb4.chrX              21263254 4 - 21540570 -ATGT
i cb4.chrX              C 0 I 174
s caePb3.Scfld02_62        97906 4 +   783054 AGag-
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    115147 114 -   118955 I
e caeRem4.Crem_Contig24   589283 186 -  1162296 I

a score=-3418.000000
s ce10.chrX               835126 213 + 17718866 AAACATAACAATAATCTGACCATAATGATAAATTTGTGGATGTATTGACTATAATTATGAGTGCACTAACCCAACTTGGATTATGCACTGACCAACTTGACAGTTGCACTGACCAAGTTGACAGTTGCACTGACCAACTAGACAGTTGCACTGACCAAACTAACAGTTGCACTGACATTACTGGTAGATCTACTGACTAAAAGAAAACATAAC
s caePb3.Scfld02_62        97910  91 +   783054 aatcaacaaaacaa-------ataa--atagaCATGCAG--------------GTTCTGAAT---TTCATGTAATCTGTATTATAAATT---------------------------------------------------------------------------------ACTGCCTTCATtagt-------ttcaatcaaa--------aac
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21263258 174 - 21540570 I
e caeSp111.Scaffold412    115147 114 -   118955 I
e caeRem4.Crem_Contig24   589283 186 -  1162296 I

a score=-346.000000
s ce10.chrX               835339 72 + 17718866 TTCAGAGCATCTTCACGGACAGCGTCACCGGATCGATTACGAATAATACCAATGGAGTTTGATACGGTGAGT
s caeRem4.Crem_Contig24   589469 69 -  1162296 TCCAGAGCATCTTCTCGAACCGCATCCCCAGAAAGATT---GAAAGCACCGtcggatttcgaaaaagtatGT
i caeRem4.Crem_Contig24 I 186 I 66
s caePb3.Scfld02_62        98001 28 +   783054 tccaGCGAATATTC------------------------------------------TTTCCAAAAAGCGT--
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21263258 174 - 21540570 I
e caeSp111.Scaffold412    115147 114 -   118955 I

a score=-3380.000000
s ce10.chrX               835411 415 + 17718866 AGCTACATTAAATGACATCATAGTATACATAACACACAGAAAGTCACTTTCGCTAAGACAAGACAATGATCTGATCTTGAACAAGGTATCAGGGAAATCCTAGACAAGATGTGAAGCGGCAGAAACTAGATTTAAATTTAGAGTGATGGAATTTTAGATTGTGATTTGAATAATGATTTTGTTTCGGGGCGAAGTCTCAGAGCAAGTCAGGGATTAGAAAAACATCAAACTTTATCAGATCGGATCCCAATCCGTTTTGAAATTTGTAGAACGTTTTTCAAC--AAACAATATACTAGTAAACAGCAAAACTTAGTAATCAAGTACAATACTAATTATCATTTTT------CAATACATATATTATTAAAAATTACAGGATATCTCAATATCGAGTGTTGTGAGCCCCGCTGCAGCTCTGACA
s caePb3.Scfld02_62        98029 264 +   783054 ATTTCTGCTGAat-atttca-----------------agaaagtttCTCTC-----------------------------------------------------CACCATTTGAA-------AACCCAG---------------------TTTTTAAGCTGccatttccatcat-------tttcagt----aGTGGCAGAGCTTATCAGAAATAGGAGA------AAACTT--TCAGAGCATCTTC----------------TCGAACAGCGTCTCCCGATCGGATTCAAATACCTACTAATTACGAGA----------AAGTACGTGATAAATTCACACTTGTaacctaaaaaacaaaaaatactttgaattCCAGGAAAGCT------------TTGT---TCCGGCTTCACAGCTGACG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21263258 174 - 21540570 I
e caeSp111.Scaffold412    115147 114 -   118955 I
e caeRem4.Crem_Contig24   589538  66 -  1162296 I

a score=1211.000000
s ce10.chrX               835826 5 + 17718866 CCTGC
s caeRem4.Crem_Contig24   589604 5 -  1162296 CCTGT
i caeRem4.Crem_Contig24 I 66 C 0
s caeSp111.Scaffold412    115261 5 -   118955 CCTGC
i caeSp111.Scaffold412  I 114 C 0
e caePb3.Scfld02_62        98293 0 +   783054 C
e cb4.chrX              21263258 174 - 21540570 I

a score=126763.000000
s ce10.chrX               835831 693 + 17718866  
s cb4.chrX              21263432 712 - 21540570  
i cb4.chrX              I 174 C 0
s caeRem4.Crem_Contig24   589609 710 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 41
s caeSp111.Scaffold412    115266 688 -   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        98293 717 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-8653.000000
s ce10.chrX               836524 49 + 17718866 TTTGCTCTAATGGACAATTTTTTGCACAACCGTACTCGTAAA--T----------------CAATGT
s cb4.chrX              21264144 34 - 21540570 ------------------ttt-------acaaaaaagaaaaa--tgcctAATTGATTATTC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    115954 32 -   118955 ----cttttttcaatgttttt-------atcataaaaacaaa--t----------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        99010 34 +   783054 ----CAGTAGACGATGGAGTT-------ATTCCACATATAGATCT----------------------
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   590319 41 -  1162296 I

a score=32879.000000
s ce10.chrX               836573 165 + 17718866 TTTAGGAAAGCCATCGGT-----------GGGAGAGAGAAGAAAAGGAAATCGCATCTTCTCCAAATGGCAAGAACGG--------------------GAATGTGACCGACCTTCTGCAGATAATTGAACAATTAGAGATGGAAAAGAGACTTCTTTTGGCGCAGAGACGAAGTGATAAAGCGGAAATTGAGGTGA
s cb4.chrX              21264178 156 - 21540570 TTCAGGACACTCACGAACTGAAGGAGAAGTCGAAGCAGACGGAAA--------------------ACAGAAACAGTGG--------------------GAATGTGACTGATCTCCTTCAAATAATTGAGCAATTAGAAGTAGAGAAAAGGCAATTGCTTGCCCAAAAAAGAAGTGACAAGTACGCAATAGAGGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   590360 165 -  1162296 TTTAGGACAGCAATGAAT-----------ACGATAAAGATGAGAACATGGCCTCATCACCTTCTCACAAAGGGAACGG--------------------AAACGTCACAGATCTCCTTAGGATAATTGAAcagctggaaaatgaaaaaagacatttgCAGATACAAAGAAAGCATGACAAACGGGAAATTGAGGTGA
i caeRem4.Crem_Contig24 I 41 C 0
s caeSp111.Scaffold412    115986 147 -   118955 tacaGCAAAGTTggcaaa-----------atgaagaagtt-------------------------aCACAACTTACGG-------------CAAAATCAAATGTTGCTGATCTATTacaaataatagaaaaattggaaatagagaagaagCAGTTGTTAGTGCAGAGAAAATCcgataaagaaaaaattgaggtAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62        99044 165 +   783054 TGCAGGACATCAGTCAAA-----------ATGAAGATGTTCAAAA--------------------AGACAACTCTCCGACAACACTGGTTCCAAAATCAAATGTTACTGATCTCCTACAAATTATTGAACAactggaaatggagaagaatcATTTATTATTACAAAGGAAGTTCGACCAGAAAGAAATTGAGGTAA
i caePb3.Scfld02_62     C 0 I 221

a score=-1149.000000
s ce10.chrX               836738 2 + 17718866 GA-
s cb4.chrX              21264334 2 - 21540570 GA-
i cb4.chrX              C 0 I 94
s caeRem4.Crem_Contig24   590525 2 -  1162296 GC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116133 2 -   118955 -AT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62        99209 221 +   783054 I

a score=-400.000000
s ce10.chrX               836740 5 + 17718866 TAAAA-
s caeRem4.Crem_Contig24   590527 5 -  1162296 -TGAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116135 5 -   118955 TAGAA-
i caeSp111.Scaffold412  C 0 I 163
e caePb3.Scfld02_62        99209 221 +   783054 I
e cb4.chrX              21264336 94 - 21540570 I

a score=139.000000
s ce10.chrX               836745 40 + 17718866 ATA----AATCGTTTGGGCAAATATCGGTTTTTGCATATTAGAT
s caeRem4.Crem_Contig24   590532 39 -  1162296 ACCTAATAACAGTTTGAACCAAC-----TCGTTGGACATTAAAT
i caeRem4.Crem_Contig24 C 0 I 110
e caePb3.Scfld02_62        99209 221 +   783054 I
e cb4.chrX              21264336 94 - 21540570 I
e caeSp111.Scaffold412    116140 163 -   118955 I

a score=0.000000
s ce10.chrX               836785 666 + 17718866  
e caePb3.Scfld02_62        99209 221 +   783054 I
e cb4.chrX              21264336  94 - 21540570 I
e caeSp111.Scaffold412    116140 163 -   118955 I
e caeRem4.Crem_Contig24   590571 110 -  1162296 I

a score=91.000000
s ce10.chrX               837451 1 + 17718866 A
s caeRem4.Crem_Contig24   590681 1 -  1162296 A
i caeRem4.Crem_Contig24 I 110 C 0
e caePb3.Scfld02_62        99209 221 +   783054 I
e cb4.chrX              21264336 94 - 21540570 I
e caeSp111.Scaffold412    116140 163 -   118955 I

a score=180.000000
s ce10.chrX               837452 1 + 17718866 T
s cb4.chrX              21264430 1 - 21540570 t
i cb4.chrX              I 94 C 0
s caeRem4.Crem_Contig24   590682 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        99430 1 +   783054 t
i caePb3.Scfld02_62     I 221 C 0
e caeSp111.Scaffold412    116140 163 -   118955 I

a score=58358.000000
s ce10.chrX               837453 172 + 17718866 TTTTTAGAGGCTGCAAGAACAACTCAATGAGACCTTAATCATGCATGGTGAAAAGATCGAGCAACTTGATGAAATCCTCGTGGACAACGAAGAATTGAAAGATATTTTGAAGCAACAAGTAAGTTGGATCATC-----GAAACAACAAG--ATTTTACTTCC-----------CTTTTCAGGCGTTGGCT
s cb4.chrX              21264431 173 - 21540570 cttacaGAAACTCAACGAGCAGCTGAATGAGACGCTGATAATGCACGGCGAAAAAATCGAACAGCTCGATGAAGTCATTGTCGATAACGAAGAATTGAAAAGCATTCTGAAACAACAAGCAC-TTGCTCTTACCATGTAAAC--ATATATAATTTGATT--------------TCTTCCAAATAGTGGCT
i cb4.chrX              C 0 I 245
s caeRem4.Crem_Contig24   590683 176 -  1162296 TTCTCAGAAACTCCAAGAGCAGCTGAATGAGACGTTGGTGATGCATGGCGAGAAGATTGAACAACTCGATGAAATCATGGTGGACAATGAGGAGCTAAAGAGTATTCTGAAGCAGCaggtttgttgttttttgagttcGAGCAAAGAAAcaacctttct--------------tttttcaggccCTGGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116303 172 -   118955 TTTTCAGAGGCTACAAGATCAGTTGAATGAAACGTTAATTATGCACGGAG-AAAAATCGAACAACTTGATGAGATTCTAGTGGATAACGAAGAATTAAAGAATATATTAAAGCAACAGGTA-----------------GTACCAAGAAagcagtttttcaaatcgcatttctttttttcaggccCTGGCT
i caeSp111.Scaffold412  I 163 C 0
s caePb3.Scfld02_62        99431 172 +   783054 tttacagaaactgAGAGACCAACTGAATGAAACCTTGGTAATGCACggcgaaaaaattgagcaacTTGATGAAGTTCTAGTGGACAACGAGGAACTCAAACAAATATTGAAGCAGCAGGTAT------GTTTTCATTTACATCAACGATG-ACTTAATAAAA-----------GTTTCCAGGCGCTGGCA
i caePb3.Scfld02_62     C 0 C 0

a score=-2909.000000
s ce10.chrX               837625 27 + 17718866 CTCACGGACAATATTGCACAATCAGAT-------
s caeRem4.Crem_Contig24   590859 24 -  1162296 CTCACCAA----------CAATAGCTCCTAATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116475 21 -   118955 CTAACAAAAA------CTCAATAAGAT-------
i caeSp111.Scaffold412  C 0 I 187
s caePb3.Scfld02_62        99603 18 +   783054 TTGACCAAA---------CAGTGAAAC-------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21264604 245 - 21540570 I

a score=-28913.000000
s ce10.chrX               837652 648 + 17718866  
s caeRem4.Crem_Contig24   590883 299 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62        99621 385 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21264604 245 - 21540570 I
e caeSp111.Scaffold412    116496 187 -   118955 I

a score=-283.000000
s ce10.chrX               838300 3 + 17718866 TTT-
s cb4.chrX              21264849 3 - 21540570 TTT-
i cb4.chrX              I 245 C 0
s caePb3.Scfld02_62       100006 3 +   783054 -TTG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold412    116496 187 -   118955 I
e caeRem4.Crem_Contig24   591182 0 -  1162296 C

a score=4650.000000
s ce10.chrX               838303 11 + 17718866 TTTAGTTGTGA
s cb4.chrX              21264852 11 - 21540570 CTCAGTTGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   591182  9 -  1162296 --CAGTTGACG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116683 11 -   118955 TTTAGTTGTTG
i caeSp111.Scaffold412  I 187 C 0
s caePb3.Scfld02_62       100009 11 +   783054 CTTAGTTGTTA
i caePb3.Scfld02_62     C 0 C 0

a score=78781.000000
s ce10.chrX               838314 90 + 17718866 TCAGAATGGTCGGATTGAAGGGAAGAGTGACTTCTGGATGGAGATAGGCCCTGTTCGTCCAAGTGTTTTCGTGTCAAGAAGCCTCTGAAA
s cb4.chrX              21264863 90 - 21540570 TCGGAGTGGTCCGATTGAAGAGAAGAGCGGCTCCGTGATGGCGACAAGCCCTGCTCATCGAGATGCTTCCTTGTCAAAAAgccactgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   591191 90 -  1162296 TCGGAGTGATCGGATTGGAGAGAAGAGCGACTTCTGGATGGAGAGAGACCCTCTTGGTCCAAGTGCTTTCGTGTCAGGAATCCTCTGAAA
i caeRem4.Crem_Contig24 C 0 I 30
s caeSp111.Scaffold412    116694 90 -   118955 TCAGAATGATCGGATTGGAGAGACGAACGGCTACGAGATGGAGAGAGTCCTTGCTCATCCAAATGCTTTCGTGTCAAGAAACCTCtgata
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100020 90 +   783054 TCAGAATGATCGGATTGGAGAGAAGAGCGGCTTCTGGATGGAGATAGTCCTTGTTCATTCAAGTGTTTCCGTGTCAAGAACcctctgaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91358 90 +   161274 TCCGAGTTCTCCGAATGTAGAGATGAATGACTTCTAGATGGCGAAATTCCTTGTTCTTCTAGGTGCTTTCGGGTCAAAAAccctctgaaa
i caeJap4.Scaffold17495 N 0 C 0

a score=1003.000000
s ce10.chrX               838404 2 + 17718866 AA
s cb4.chrX              21264953 2 - 21540570 aa
i cb4.chrX              C 0 I 58
s caeSp111.Scaffold412    116784 1 -   118955 -a
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       100110 1 +   783054 -a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91448 2 +   161274 aa
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   591281 30 -  1162296 I

a score=-761.000000
s ce10.chrX               838406 2 + 17718866 GA-
s caeSp111.Scaffold412    116786 2 -   118955 ta-
i caeSp111.Scaffold412  I 1 C 0
s caeJap4.Scaffold17495    91450 2 +   161274 -aa
i caeJap4.Scaffold17495 C 0 I 23
e caePb3.Scfld02_62       100111 0 +   783054 C
e cb4.chrX              21264955 58 - 21540570 I
e caeRem4.Crem_Contig24   591281 30 -  1162296 I

a score=60.000000
s ce10.chrX               838408 2 + 17718866 CT
s caeSp111.Scaffold412    116788 2 -   118955 tt
i caeSp111.Scaffold412  C 0 I 23
e caePb3.Scfld02_62       100111 0 +   783054 C
e caeJap4.Scaffold17495    91452 23 +   161274 I
e cb4.chrX              21264955 58 - 21540570 I
e caeRem4.Crem_Contig24   591281 30 -  1162296 I

a score=-6428.000000
s ce10.chrX               838410 280 + 17718866 TGGAGTTGCTAAGTTTGTCATATATATCACTCGCAACATTTTCAGGTACCGTTTGATTTACTTCAAATGTCTCAAAAATTATCAAACTTCAATTTTATAGCAAGTAGGTCTCCAGCAGTTAGTTTAAATAAAATAAACAATTCCCTGTAAAATACTGTCTTCTGCATTCAATCTAATAAAACATAAAACAGTGCTACTTAACCTATGACGTTCTATAACACATTCAGAAATTTTTTGCAAGGGTATAAGTAACTATTACTGATATTTCAAGAAGCAACAC
s caePb3.Scfld02_62       100111  50 +   783054 --------------------------------------------------gtttga--------aaacgt------------------TCAGTGTTAGTG--------------GCAGTT-------------------------------------------GAATTCAACTC-------------------------------------------------------------------------------------------TTGAagaa------t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    91452  23 +   161274 I
e cb4.chrX              21264955  58 - 21540570 I
e caeSp111.Scaffold412    116790  23 -   118955 I
e caeRem4.Crem_Contig24   591281  30 -  1162296 I

a score=995.000000
s ce10.chrX               838690 7 + 17718866 AAATATT
s caePb3.Scfld02_62       100161 7 +   783054 aggtttt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91475 7 +   161274 AAATATT
i caeJap4.Scaffold17495 I 23 C 0
e cb4.chrX              21264955 58 - 21540570 I
e caeSp111.Scaffold412    116790 23 -   118955 I
e caeRem4.Crem_Contig24   591281 30 -  1162296 I

a score=-916.000000
s ce10.chrX               838697 4 + 17718866 ---TTTA
s caeSp111.Scaffold412    116813 4 -   118955 ---TTTT
i caeSp111.Scaffold412  I 23 C 0
s caePb3.Scfld02_62       100168 4 +   783054 ---tttc
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91482 4 +   161274 AGAT---
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21264955 58 - 21540570 I
e caeRem4.Crem_Contig24   591281 30 -  1162296 I

a score=-51.000000
s ce10.chrX               838701 4 + 17718866 ACAA
s caeRem4.Crem_Contig24   591311 4 -  1162296 ACAA
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold412    116817 4 -   118955 ACAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100172 4 +   783054 tctt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91486 4 +   161274 GCTA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21264955 58 - 21540570 I

a score=151898.000000
s ce10.chrX               838705 175 + 17718866 ACCTAATATGTGCCTGAATCTTAGTTGCCGCGTCAGTATCCTCCTTCTTCATCTTATCAACGTGCTTGCGAGTAAGAAATCCGCGAATTTCAGATTGAATCTTGGTCGCGGCTCTGTCTTCCGGAGTGTCCACATCAATGGTGTAACCTCCCACGGAATGACGCCTAAAT------TCATT--------------
s cb4.chrX              21265013 179 - 21540570 ACCGGATGTGGGCTTGAATTTTGGTGGCTGCCTCAGTGTCTTCCTTCTTCATTTTGTCGACGTGTTTACGAGTCAGAAATCCGCGGATTTCAGACTGAATCTTAGTGGCCGCTCTATCTTCTGGAGTATCCATCTCAATAGAATAACCTCCAACCGAATGACGCCTGAGAatgctttga----------------
i cb4.chrX              I 58 I 3
s caeRem4.Crem_Contig24   591315 173 -  1162296 ACCTAATATGAGCCTGAATTTTGGTAGCAGCTTCAGTGTCCTCCTTCTTCATCTTATCAACATGCTTGCGAGTAAGAAATCCGCGGATTTCAGATTGGATTTTCGTTGCGGCTCTATCTTCCGGAGTATCCATTTCAATGGTGTAGCCTCCAACCGAGTGACGTCTGAAA------TAA----------------
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold412    116821 173 -   118955 ACCGAATATGAGCTTGAATCTTAGTTGCAGCCTCCGTgtcctcctttttcattttatcaacATGCTTACGAGTTAAAAAGCCGCGGATCTCggattgaatttttatagCCGCTCTGTCTTCCGGAGTATCCATTTCAATAGTGTACCCTCCAACAGAATGACGTctggaa------tca----------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100176 175 +   783054 acctGATATGAGCTTGAATTTTGGTCGCTGCTTCCGtatcttccttcttcattttatcaACATGCTTGCGAGTCAAGAACCCGCGGATTTCAGATTGTATCTTAGTGGCCGCTCTATCTTCCGGAGTATCCATTTCGATAGTGTACCCTCCAACAGAGTGACGTCTAAAA------CAATC--------------
i caePb3.Scfld02_62     C 0 I 29
s caeJap4.Scaffold17495    91490 187 +   161274 ACCTTATATGCGCTTGGATTTTAGTTGCTGCATTAGTGTCTTctttcttgagtttttccaCATGCTTCCGCGTGAGAAATCCACGAATTTCAGATTGAATTTTTGTAGCTGCACGATCTTCAGGCGTATCTGACTCGATAGTGTATCCTCCAACAGAATGACGTCTTTAA------AAA--AGTTAAAGTGTGCT
i caeJap4.Scaffold17495 C 0 C 0

a score=-5814.000000
s ce10.chrX               838880 11 + 17718866 TAGTTCAGACA----------------------
s cb4.chrX              21265195  9 - 21540570 tt--ttggacA----------------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   591491 11 -  1162296 CTGCTTgcaca----------------------
i caeRem4.Crem_Contig24 I 3 I 15
s caeSp111.Scaffold412    116994  3 -   118955 --------aaa----------------------
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    91677 29 +   161274 ----CAGCAAATGTTTAACCGCAGTGTCTAAGA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       100351 29 +   783054 I

a score=-2992.000000
s ce10.chrX               838891 20 + 17718866 TTTCTATTCTATTA------TGTAGT
s cb4.chrX              21265204  4 - 21540570 ----------------------CAAA
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold412    116997 10 -   118955 tttc----------------tgtaGA
i caeSp111.Scaffold412  C 0 I 16
s caeJap4.Scaffold17495    91706 26 +   161274 TTCTCAAATTATCATTCACTTGTACC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       100351 29 +   783054 I
e caeRem4.Crem_Contig24   591502 15 -  1162296 I

a score=91.000000
s ce10.chrX               838911 1 + 17718866 A
s caeJap4.Scaffold17495    91732 1 +   161274 A
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       100351 29 +   783054 I
e cb4.chrX              21265208 6 - 21540570 I
e caeSp111.Scaffold412    117007 16 -   118955 I
e caeRem4.Crem_Contig24   591502 15 -  1162296 I

a score=76997.000000
s ce10.chrX               838912  97 + 17718866 CTCACTTTTGATCTTTCTTGTTGTTGGCAGAATCAAGCTTCTCAGAAGAAGAAGTTCTAGTGCTCATTCCATACTTTTCTGGGTGAGCGCGGACCT------G
s cb4.chrX              21265214  96 - 21540570 CTTACTTCTGATCTTTCTTATTGTCAGCAGAACCGAGTTTTTCTGACGAAGTAGTTCTGGCACTCATTCCGTACTTTTCAGGGTGAGCGCGCACCT-------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   591517  93 -  1162296 cTCACTTTTGGTCCTTCTTGTTGT---CAGAGTCAAGTTTCTCCGACGATGTAGTTCTAGTAGCCAATCCGTACTTCTCCGGATGAGCACGGacct-------
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold412    117023  94 -   118955 CTCACTTCTGGTCCTTTTTGTTGTTGGCAGAGTCGAGCTTCTCCGATGAGGCGGTTTTGG---TCATGCCGTACTTCTCTGGATGGGCACGTacct------a
i caeSp111.Scaffold412  I 16 C 0
s caePb3.Scfld02_62       100380 100 +   783054 CTTACTTTTGGTCTTTCTTGTTGTTGACCGAATCGAGTTTCTCCGAAGAAGTGGTTTTAG---TCATTCCATACTTCTCAGGGTGGGCACGgacctgaaaaga
i caePb3.Scfld02_62     I 29 C 0
s caeJap4.Scaffold17495    91733  97 +   161274 CTCACTTTTGATCTTTTTTGTGGTCGAATGATTCGAGCTTCTCCGATGAAGAAGTTCTGGTATTTAACCCATACTTTTCGGGATGTGCACGGACCT------A
i caeJap4.Scaffold17495 C 0 I 60

a score=-5709.000000
s ce10.chrX               839009 21 + 17718866 GAACTTTACACAGTAATACTT----------
s cb4.chrX              21265310 15 - 21540570 ---------TAAACAATATTGTGT-------
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig24   591610 22 -  1162296 ---------aaaattgaaataagaaacagaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117117 18 -   118955 aaaatt---tcaattatgaTG----------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100480 21 +   783054 aaaactgaactaattgtatcg----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    91830 60 +   161274 I

a score=-15438.000000
s ce10.chrX               839030  24 + 17718866 ACATACTACAAGGCAGAGGATT------------------------------AA--------------------------------------------------------------------------
s caeRem4.Crem_Contig24   591632  13 -  1162296 -------acttgaaattgga------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117135  22 -   118955 ----------AGAAATATTATG------------------------------AAAGAATGG------------------------------------------------------------------G
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100501 118 +   783054 ----------aagaaaaaaataagcaaaaCACAATATCTCGATCTTCCACACAAAGAACTGTTTTTAAATTCTATGTATTCAAAGAGCAAATTCACTTTGTGGGTGTTGCACAATTTATTTGTACTTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    91830  60 +   161274 I
e cb4.chrX              21265325  29 - 21540570 I

a score=211.000000
s ce10.chrX               839054 5 + 17718866 ---AACAA
s cb4.chrX              21265354 5 - 21540570 ---AACTT
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig24   591645 5 -  1162296 ---aactt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117157 8 -   118955 AAGTGCTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100619 8 +   783054 AAACACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    91830 60 +   161274 I

a score=73378.000000
s ce10.chrX               839059 86 + 17718866 ACCAAGTGTCCTTTGAAAGCGGCTTGAATTTTAGTTGCGGCAGTG---TCCATTGGACTGGCTGGTCGCTCAACTTCAGCAAACTGAAA
s cb4.chrX              21265359 86 - 21540570 ACCAAGTGACCCTTAAATGCAGCTTGGATTTTCGTGGCAGCACTG---TCCATGGGACTAGCTGGACGCTCCATTTCGAGGAACTACAA
i cb4.chrX              C 0 I 172
s caeRem4.Crem_Contig24   591650 86 -  1162296 ACCAAGTGTCCCTTGAAGGCCGCTTGAATTTTTGTGGCAGCTGAA---TCCATTGGACTCGATGGACGCTCCACTTCAGCAAACTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117165 86 -   118955 ACCAAGTGTCCTTTAAATGCAGCTTGAATTTTAGTGGCTGCAGTG---TCCATTGGACTTGCTGGGCGCTCAACTTCAGCGAACTAAAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100627 89 +   783054 ACCAAATGTCCCTTGAAAGCTGCCTGGATTTTGGTTGCGGCACTATCCTCCATTGGGCTAGCCGGGCGGGCAGTTTCAGCAAACTGAAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    91890 86 +   161274 ACCAGGTGTCCTTTAAATACAGCTtgaattttggtcgctgcatTG---TCCAACGGACTGGGTGGTCGATCAGTTTCAACGAACTAAAA
i caeJap4.Scaffold17495 I 60 I 39

a score=-41.000000
s ce10.chrX               839145 6 + 17718866 TGAGAA
s caeRem4.Crem_Contig24   591736 6 -  1162296 TTATAA
i caeRem4.Crem_Contig24 C 0 I 554
s caeSp111.Scaffold412    117251 6 -   118955 TCAAAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       100716 6 +   783054 ATATgg
i caePb3.Scfld02_62     C 0 I 440
e caeJap4.Scaffold17495    91976 39 +   161274 I
e cb4.chrX              21265445 172 - 21540570 I

a score=36.000000
s ce10.chrX               839151 5 + 17718866 AAGTT
s caeSp111.Scaffold412    117257 5 -   118955 TATTT
i caeSp111.Scaffold412  C 0 I 495
e caePb3.Scfld02_62       100722 440 +   783054 I
e caeJap4.Scaffold17495    91976 39 +   161274 I
e cb4.chrX              21265445 172 - 21540570 I
e caeRem4.Crem_Contig24   591742 554 -  1162296 I

a score=0.000000
s ce10.chrX               839156 1482 + 17718866  
e caePb3.Scfld02_62       100722  440 +   783054 I
e caeJap4.Scaffold17495    91976   39 +   161274 I
e cb4.chrX              21265445  172 - 21540570 I
e caeSp111.Scaffold412    117262  495 -   118955 I
e caeRem4.Crem_Contig24   591742  554 -  1162296 I

a score=300.000000
s ce10.chrX               840638 1 + 17718866 C
s caePb3.Scfld02_62       101162 1 +   783054 C
i caePb3.Scfld02_62     I 440 C 0
s caeJap4.Scaffold17495    92015 1 +   161274 C
i caeJap4.Scaffold17495 I 39 C 0
e cb4.chrX              21265445 172 - 21540570 I
e caeSp111.Scaffold412    117262 495 -   118955 I
e caeRem4.Crem_Contig24   591742 554 -  1162296 I

a score=546.000000
s ce10.chrX               840639 1 + 17718866 T
s cb4.chrX              21265617 1 - 21540570 T
i cb4.chrX              I 172 C 0
s caePb3.Scfld02_62       101163 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    92016 1 +   161274 T
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412    117262 495 -   118955 I
e caeRem4.Crem_Contig24   591742 554 -  1162296 I

a score=910.000000
s ce10.chrX               840640 1 + 17718866 T
s cb4.chrX              21265618 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592296 1 -  1162296 t
i caeRem4.Crem_Contig24 I 554 C 0
s caePb3.Scfld02_62       101164 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    92017 1 +   161274 T
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412    117262 495 -   118955 I

a score=65205.000000
s ce10.chrX               840641 73 + 17718866 ACCTTCTTCTGGAGATCAGCACGGAAAACTTCGTAAGCCGCTGGATCCTTTAGAATGTTCCTGTTTTCTGAAA
s cb4.chrX              21265619 73 - 21540570 ACCTTTTTCTGGAGATCTGCTCGGAAGACCTCGTAAGCAGCTGGGTCCTTCAAGATGTTTCTGTTCTCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592297 73 -  1162296 accTTCTTTTGGAGATCAGCTCGGAAGACCTCGTAGGCAGCTGGGTCCTTCAAGATGTTgcggttttctggaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117757 73 -   118955 ACCTTCTTCTGAAGATCAGCACGGAACATCTCATATGCAGCTGCGTCCTTCAGGATGTTccggttttctgaaa
i caeSp111.Scaffold412  I 495 C 0
s caePb3.Scfld02_62       101165 73 +   783054 ACCCTTTTTTGAAGATCTGCGCGGAACATTTCATAGGCAGCTGGATCCTTCagaatgtttctgttttctgaaa
i caePb3.Scfld02_62     C 0 I 285
s caeJap4.Scaffold17495    92018 73 +   161274 ACTCTTTTTTGTAAATCAGCCCTAAAAACTTCATACGCTGCAGCATCCGTTAAGACATTCTtgttttcttaaa
i caeJap4.Scaffold17495 C 0 C 0

a score=1332.000000
s ce10.chrX               840714 2 + 17718866 AA
s cb4.chrX              21265692 2 - 21540570 GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592370 2 -  1162296 aa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    117830 2 -   118955 aa
i caeSp111.Scaffold412  C 0 I 175
s caeJap4.Scaffold17495    92091 2 +   161274 aa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       101238 285 +   783054 I

a score=236.000000
s ce10.chrX               840716 2 + 17718866 AA
s cb4.chrX              21265694 2 - 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592372 2 -  1162296 at
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    92093 2 +   161274 aa
i caeJap4.Scaffold17495 C 0 I 31
e caePb3.Scfld02_62       101238 285 +   783054 I
e caeSp111.Scaffold412    117832 175 -   118955 I

a score=391.000000
s ce10.chrX               840718 3 + 17718866 AAT
s cb4.chrX              21265696 3 - 21540570 AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592374 3 -  1162296 aat
i caeRem4.Crem_Contig24 C 0 I 75
e caePb3.Scfld02_62       101238 285 +   783054 I
e caeJap4.Scaffold17495    92095 31 +   161274 I
e caeSp111.Scaffold412    117832 175 -   118955 I

a score=491.000000
s ce10.chrX               840721 5 + 17718866 GTGGG
s cb4.chrX              21265699 5 - 21540570 GTGGg
i cb4.chrX              C 0 I 158
e caePb3.Scfld02_62       101238 285 +   783054 I
e caeJap4.Scaffold17495    92095 31 +   161274 I
e caeSp111.Scaffold412    117832 175 -   118955 I
e caeRem4.Crem_Contig24   592377 75 -  1162296 I

a score=0.000000
s ce10.chrX               840726 594 + 17718866  
e caePb3.Scfld02_62       101238 285 +   783054 I
e caeJap4.Scaffold17495    92095  31 +   161274 I
e cb4.chrX              21265704 158 - 21540570 I
e caeSp111.Scaffold412    117832 175 -   118955 I
e caeRem4.Crem_Contig24   592377  75 -  1162296 I

a score=9.000000
s ce10.chrX               841320 17 + 17718866 CAAAATATATGACCAAA
s caeRem4.Crem_Contig24   592452 13 -  1162296 cagaatACA----CTAT
i caeRem4.Crem_Contig24 I 75 C 0
e caePb3.Scfld02_62       101238 285 +   783054 I
e caeJap4.Scaffold17495    92095 31 +   161274 I
e cb4.chrX              21265704 158 - 21540570 I
e caeSp111.Scaffold412    117832 175 -   118955 I

a score=273.000000
s ce10.chrX               841337 1 + 17718866 A
s caeRem4.Crem_Contig24   592465 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       101523 1 +   783054 a
i caePb3.Scfld02_62     I 285 C 0
e caeJap4.Scaffold17495    92095 31 +   161274 I
e cb4.chrX              21265704 158 - 21540570 I
e caeSp111.Scaffold412    117832 175 -   118955 I

a score=134.000000
s ce10.chrX               841338 2 + 17718866 GT
s cb4.chrX              21265862 2 - 21540570 GC
i cb4.chrX              I 158 C 0
s caeRem4.Crem_Contig24   592466 2 -  1162296 AC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       101524 2 +   783054 at
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92095 31 +   161274 I
e caeSp111.Scaffold412    117832 175 -   118955 I

a score=131801.000000
s ce10.chrX               841340 151 + 17718866 TCACCTCTGCGATGTTTCAAGTACTCATCGAAAAACATGTGGCCAAACTCGGCCACATCCGATGGTTGACTTCGGAGTACTTCACGCGCCAACGCTTCCAAAATTGGGCGAAGATCGTGGGGAACGAAGCACTTATTCCGCTGATCCATTG
s cb4.chrX              21265864 151 - 21540570 CTACCTCTGCGATGCTTCAGATACTCGTCAAAAAACATGTGACCAAATTCAGCTACATCTGCCGGCTGAGTACGAAGAACCTCACGCGCTAATGCCTCCAGAATTGGCCGAAGGTCGTGAGGAACGAAGCACTTGTTTCGAGGATCCATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592468 151 -  1162296 TTGCCTTTACGATGCTTCAAATACTCATCGAAAAACATGTGACCGAATTCAGCGACATCTGATGGCTGGCTTCTGAGTACTTCACGCGCTAATGCCTCCAAAATTGGACGGAGGTCGTGAGGAACAAAACACTTGTTTTTAATGTCCATCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118007 151 -   118955 TCACCTCTTCGATGCTTCAGATACTCATCGAAAAACACATGACCGAATTCGGCGACATCAGAAGGCTGACTTCTCAACACCTCACGGGCCAATGCCTCCAATATTGGGCGTAGATCGTGCGGAACGAAACACTTGTTTCGAGTATCCATTg
i caeSp111.Scaffold412  I 175 C 0
s caePb3.Scfld02_62       101526 150 +   783054 ttacCTTTGCGATGCTTCAAGTATTCATCGAAAAACATGTGACCGAATTCGGCAACATCCGAAGGTTGGCTTCTGAGCACCTCACGAGCCAACGCTTCCAGTATTGGACGCAGATCGAGCGGAACAAAACACTTGTTTCGAATGTCCATT-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    92126 151 +   161274 TCACCTTGTCGATGTCTTAAATATTCATCGAAAAATAGGTGCCCAAAGAAAGCTACGTCAGAAGGCTGACTTCTTAAAACTTCACGAGCCAAGGCCTCTAAAATTGGGCGGAGATCGAATGGAACATTGCATTTGCTCCGGGACTCCATTG
i caeJap4.Scaffold17495 I 31 I 2914

a score=-2539.000000
s ce10.chrX               841491  8 + 17718866 --CCT----GAAAA-
s cb4.chrX              21266015  8 - 21540570 --GCT----TTAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   592619 12 -  1162296 --GCTGGAATGAAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118158 11 -   118955 gagct----gaaaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       101676  9 +   783054 --TCC----TACAAA
i caePb3.Scfld02_62     C 0 I 2037
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=-2333.000000
s ce10.chrX               841499 28 + 17718866 ATGTA--TAGTATAGGACTAG--ATTTTAGAA-
s cb4.chrX              21266023 27 - 21540570 AATCA--TATCATGTAAc-ag--tttttaaaa-
i cb4.chrX              C 0 I 484
s caeRem4.Crem_Contig24   592631 30 -  1162296 AAGTGTTTATTTGATAACTAG--gtgacaaga-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118169 30 -   118955 atata--tttcaaaaaac-agtagTGTGAAGAA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=546.000000
s ce10.chrX               841527 2 + 17718866 AA
s caeRem4.Crem_Contig24   592661 2 -  1162296 aa
i caeRem4.Crem_Contig24 C 0 I 783
s caeSp111.Scaffold412    118199 2 -   118955 AA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21266050 484 - 21540570 I

a score=120.000000
s ce10.chrX               841529 8 + 17718866 CTGCTAAG
s caeSp111.Scaffold412    118201 8 -   118955 CGTGTAAG
i caeSp111.Scaffold412  C 0 T 52983
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21266050 484 - 21540570 I
e caeRem4.Crem_Contig24   592663 783 -  1162296 I

a score=0.000000
s ce10.chrX               841537 3019 + 17718866  
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21266050  484 - 21540570 I
e caeSp111.Scaffold412    118209 52983 -   118955 T
e caeRem4.Crem_Contig24   592663  783 -  1162296 I

a score=928.000000
s ce10.chrX               844556 54 + 17718866 AACGAAAGAAAA------AAAGAAACTTGTTAGGTTTACAATTTACTACTTTTTTATT---CA
s caeRem4.Crem_Contig24   593446 63 -  1162296 aaaaaaggaaaagtttgtAGGGAAACTTGGAGAGTCGAATATTTACAACTAGTTTATCGACTA
i caeRem4.Crem_Contig24 I 783 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21266050 484 - 21540570 I
e caeSp111.Scaffold412    118209 52983 -   118955 T

a score=16202.000000
s ce10.chrX               844610 220 + 17718866 CTGAACAAATTCAATGTGAAGCCAAAGGAG-GCGGGTGCCGTGTGAGGTAGAAAGGAAAAGAGC-TTCAATGAGGGAGGGAGGCA-AGAGATGGAGATATCGACAAGAAATGTTGCTCTTGCTCTCACACGATCTGCCCCCGTCTCCTGCCCCTCCCTTTTTCCTTCATCTCGGCTCCGGTGGGGTCGGCTTTTCCCAT--TTTGCCCCGTGGCTTCTTCATCCT------------------
s cb4.chrX              21266534 221 - 21540570 CTATACAAATTCAATGTGAATGCGATGAAATAAGGGTGCCGTGTGAGGTAGCGGGaaaaaaaaG-GCGGTTTGAGCAGAGAGACGCTGAGGGAAATATATCGGCAAGAAATGTTGCTCTCGTTCTCACACGATCGAGGCTCTTCTCCGTTTCTGCCC-GCCAATTTCTTCTCG--TCGGACTCCATTGActttctcttttgcctcctgcttggcttcttcggctt------------------
i cb4.chrX              I 484 I 662
s caeRem4.Crem_Contig24   593509 213 -  1162296 CTACACAAATTCAatgtggggggg-------ggggctgCCGTGTGAGGTAGGGGAAAAGGAGGGTGCGGATGAGACACTGAGCCATGATGAGAGAGATATCGACAAGAAATGTTGCTCTTGCTCTCACACGATCGAGGCTCCT-TCCGTTGCCTCC--------------------CCGACTCGATTGACTCTCTCACT--CCTCCTGcttggcttcttcttcttcgtctttctTGCCTTTCT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e caeSp111.Scaffold412    118209 52983 -   118955 T

a score=75.000000
s ce10.chrX               844830 888 + 17718866  
s caeRem4.Crem_Contig24   593722 863 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21266755 662 - 21540570 I
e caeSp111.Scaffold412    118209 52983 -   118955 T

a score=-886.000000
s ce10.chrX               845718 46 + 17718866 ATACATAATTTGATTATAGA-ATTTTATTAAGGAAAA-ATTAGAGCTC
s cb4.chrX              21267417 36 - 21540570 ATATCTTACTCAAATATGAA-CATTTATTAAGtaaga-----------
i cb4.chrX              I 662 C 0
s caeRem4.Crem_Contig24   594585 36 -  1162296 -----atggataaataagaatcttttattagagaaaatctc-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30651 43 +   118955 attcgaaattaaaaaatgac-acTTTATTAAGTaaag----agaaatc
i caeSp111.Scaffold412  n 52983 C 0
e caePb3.Scfld02_62       101685 2037 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=47432.000000
s ce10.chrX               845764 101 + 17718866 ----AAAA----AAAGCTCAAAAACACACTGTTAAGTTAACT-ATCAACACGTTATTACTGTTGTTTAAACGACCCGAA--TATTTAACAACGTCAT--ACAATGAAAGAAGTT
s cb4.chrX              21267453  99 - 21540570 ----aata----atttttca-----acacTGTTTTTTAAACTAGCCAACACGTTATTAATGTTGTTAAAACGACCCGAA--TATTTAACAACGTCATTCACAATAAACGATTTT
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig24   594621  98 -  1162296 ----aaaa----aatataaa-----acactG-TTAGAAAACTAATCAACACGTTATTACTGTTGTTAAAACGACCCGAA--TATTCAACAACGTCATTCACAATGAAAGAACTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30694 103 +   118955 aagaaaaa----aaaatata-----acaCTG-TTACATAACT-ATCAACACGTTATTGCTGTTGTTTAAACGACCCGAATATTTTCAACAACGTCATTCACATTGAAAGAACTT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       103722 108 +   783054 aaaaaaaacactaaagaTTA-----ACACTG-TTATGCAACTAATCAACACGTtattaaagtttcaaaatcgaCCCGAACGTATTCAACAACGTCATTCACAATGAAAGAACTT
i caePb3.Scfld02_62     I 2037 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=-4754.000000
s ce10.chrX               845865 36 + 17718866 TGTGAGGGGGGAAGAATGACAAAAAATAT---------GACAAA--A
s caeRem4.Crem_Contig24   594719 46 -  1162296 TGTGAGGAGGAGAGTATGACAACAAGCCTCATGTGTTCAACCACAT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30797 32 +   118955 TGTGAGA-TGAAAGAAGG--GAGAAGCCA---------GAAAGC---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       103830 21 +   783054 TGgggaa-------------aaaaagtca----------atgac---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267552 52 - 21540570 I

a score=56347.000000
s ce10.chrX               845901 92 + 17718866 TTAAACAATAATCTCTCGAACGATTCGTCGATCTTC------ATCACTGTTCTCCAGTACATCACCGTTTGTAAAGCCGGATAGTGAAGTATCTGAAA
s cb4.chrX              21267604 98 - 21540570 TCAAACAATTATTTCTCGGACGATTCGTCGATCTTCGTTGCTGTCACTGTTGTCTAACGTTTCACTGGTTCCAAAACAGGATATAGAAGAGTCTAAAA
i cb4.chrX              I 52 I 32
s caeRem4.Crem_Contig24   594765 98 -  1162296 TTAAACAATTATTTCTCGAACAATTCGTCGATCATCATTGCCATCACTGCTATCTATTGTTTCACCGTTTCCAAAACCGGATAATGAAGTGTctggaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30829 98 +   118955 TCAAACAATTATTTCTCGAACGATTCGTCGATCTTCGTTGTTGTCACTATTGTCTAATGAGTCACTGTTTCCAAAACCGGATAAGGAggtatctgaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       103851 98 +   783054 TCAAACAATTATCTCCCGCACGATTCGTCTGTCTTCATTGCTATCACCATTTTCCGAAGACTCAATGTTACCAAAACCGGATAAGGAAGTATCTGAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=67.000000
s ce10.chrX               845993 1 + 17718866 G
s caeRem4.Crem_Contig24   594863 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30927 1 +   118955 a
i caeSp111.Scaffold412  C 0 I 7
s caePb3.Scfld02_62       103949 1 +   783054 G
i caePb3.Scfld02_62     C 0 I 139
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702 32 - 21540570 I

a score=-7.000000
s ce10.chrX               845994 11 + 17718866 TTGAATCGTTT--
s caeRem4.Crem_Contig24   594864  8 -  1162296 -----cagttttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30935 11 +   118955 ttgaataattt--
i caeSp111.Scaffold412  I 7 I 33
e caePb3.Scfld02_62       103950 139 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702 32 - 21540570 I

a score=460.000000
s ce10.chrX               846005 31 + 17718866 GGTCTACAAAAATTGCGGCAGGATTTAACAA
s caeRem4.Crem_Contig24   594872 23 -  1162296 gatttttaa--------gcAGGAATTAGTAA
i caeRem4.Crem_Contig24 C 0 I 44
e caePb3.Scfld02_62       103950 139 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702 32 - 21540570 I
e caeSp111.Scaffold412     30946 33 +   118955 I

a score=0.000000
s ce10.chrX               846036 403 + 17718866 GTGCGTCTGTAAGTTATATAGCCACCcgtggtgtcagagtgtctcatttcggtttgatctacgtagatctgaaagaacgcgagagttgcgacgtagagttctcatcagattttgcatggttaagaacgtgctgacgtcacattttttggccaaaacgttcccgcatgttttgtagattaaaccgtaatgacacagcctgacaccacgtgTAGCCAGCTACCAATTAAGTTCACTGTATGGCTAAAATGGAATAAAGCATAATTACTTAAATGGGCAATTGCATTTATCAGTCAATCGGGAATTGGGCAATAAGTTAGTAGTAGGGTTATTGATTTTATTATAGTGCAGAAAATATTCAAGAAAATTCGATCTACTTACCAATTAATCTTTTTACATATCTAGG
e caePb3.Scfld02_62       103950 139 +   783054 I
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702  32 - 21540570 I
e caeSp111.Scaffold412     30946  33 +   118955 I
e caeRem4.Crem_Contig24   594895  44 -  1162296 I

a score=198.000000
s ce10.chrX               846439 15 + 17718866 AAATAGAATTTTCT-A
s caePb3.Scfld02_62       104089 16 +   783054 aaatatcttCTTCTCA
i caePb3.Scfld02_62     I 139 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702 32 - 21540570 I
e caeSp111.Scaffold412     30946 33 +   118955 I
e caeRem4.Crem_Contig24   594895 44 -  1162296 I

a score=546.000000
s ce10.chrX               846454 1 + 17718866 A
s caeRem4.Crem_Contig24   594939 1 -  1162296 A
i caeRem4.Crem_Contig24 I 44 C 0
s caeSp111.Scaffold412     30979 1 +   118955 A
i caeSp111.Scaffold412  I 33 C 0
s caePb3.Scfld02_62       104105 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21267702 32 - 21540570 I

a score=98502.000000
s ce10.chrX               846455 268 + 17718866 CTCACTTTTTAAAACTTCTGTATTTTCTTGTAAATAACAATCTGTGGACACATCATATTCCATATTCAAACCGGGCGGTTTCGTCGACTTT------GCATC------------ATGTTGACTAAAACTTTTG------AAGTTATTCGAATTTAAATATTCT---CCTAACCTCAAATGATTAGTTTCGTTTTC---CGTTATTGCAAATGTTGCGTGCTTTGGTTCTTCATAATCTGCAGGCCTTTTCAATTCATCTCCAGGTAGGGAAGTAAGAATGATTGGCCTAAAAATGAGT
s cb4.chrX              21267734 282 - 21540570 CTTACTTTTGAGTACGTCTGTATTTTCTTGAAGATAACAATCATTAGACACATCATACTCCATATTTGATCC---CGGTTTGCCcggtttttgtga---attttcaagacTGAGATGATGGCTGGAACgttta------aatgaattttta-acaaaCATTGTGTACCCTACTTCAAAGAATTCGTTCCGTTTTC---CGTTATCATGTAAgtggaattttttgtttcctcaTAGTTGGCTGGTTTTTTCAACTCATCACCAGGCAACGAAGTAAGAACGATGGGTCTGTAAActggt
i cb4.chrX              I 32 I 28
s caeRem4.Crem_Contig24   594940 285 -  1162296 CTCACTTTTCAGCACTTCTGTATTTTCTTGTAGGTAACAATCCGTAGACACATCATAGTCCATATTTGAGCC---CGTCTTACCAGGTTTTTGTAGCACGTCGCTGTGATGGTTGTGGTGGctaaaacttttattttcgaaGTAATTCGAATATAAAAATTCT---CCCAACCTCGAATgatttgtttcgttttc---cgTTATCACAAATGTGGCGTGTTTCGGCTCTTCGTAGTCGGCTGGCTTTTTCAGCTCATCACCAGGTAGTGAAGTAAGAATTATTGGtcttaaaat----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30980 268 +   118955 CtcactttttaaaacttcAGTATTATCTTGTAAATAGCAATCTGTTGACACATCGTATTCTATATTTGACCC---GGTTTTTGTTAACTTATGCTGAGCATC------------GTGGTGGctaaaacttttattttcgaaatgattcgaatataaaaattcc---cCCAACCTCAAATGATTTGTCTCGTCCTCAGTTGTCATTGCAAATGTGGCATGCTTTGGCTCTTCATAATCAGCTGGCTTCTTCAACTCATCTCCTGGTAGCGATGTCAAAATAATTGGG------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       104106 278 +   783054 CTCACTTTTCAAGACCTTTACATTATCTTGCAAATAACAATCAGTTGACACATCGTATTCCATATTTGTACC---AGGCTTTGAGCAGTTATGGAATGATTC------------ATGGTGACTAAAATCACAATTACATGAATTA-Tcgtaaatgaaaaatgt---gctTACCTCAAAGGCTCATTATCGTTTTCAGAAGTTACTGCGAAAGTAGCATGATTGGGTTCTTCATACCCTgatggttttttcaattcgtcTCCCGGCAAAGATGTTAATATGATCGGACTGAATATGGA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I

a score=-3513.000000
s ce10.chrX               846723 29 + 17718866 AAAGTAGGAAAACATATATTTTAATT----------------TTT
s caeRem4.Crem_Contig24   595225 21 -  1162296 -----ttaattttaaggATTTTCTCT-------------------
i caeRem4.Crem_Contig24 C 0 I 10
s caePb3.Scfld02_62       104384 29 +   783054 -------------ATATATTGTAACTAGCCAACAATATTTTG---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    92277 2914 +   161274 I
e cb4.chrX              21268016 28 - 21540570 I
e caeSp111.Scaffold412     31248  0 +   118955 C

a score=-278.000000
s ce10.chrX               846752 3 + 17718866 TTT-
s caeJap4.Scaffold17495    95191 3 +   161274 -TTG
i caeJap4.Scaffold17495 I 2914 C 0
e caePb3.Scfld02_62       104413 0 +   783054 C
e cb4.chrX              21268016 28 - 21540570 I
e caeSp111.Scaffold412     31248 0 +   118955 C
e caeRem4.Crem_Contig24   595246 10 -  1162296 I

a score=83487.000000
s ce10.chrX               846755 148 + 17718866 GCTTACGAAAGTTTTGAAGTTTTTGGATTTGATCGAGTTTTGCAGCAGACAAGGAAGAATACGCAGATAGCAAGACCAATGAAAATGAAGAATAAAAATGGGAAAAACACGTTGGTCTTCCAAACTGAACCAGAACCGCTTGCTGAAA
s cb4.chrX              21268044 148 - 21540570 AGTTACGAtagctttgaagttttgggacTTGATCTTGTTTTGCAGCACACGAGGAAAAACACAATGACAGCAAGACtgatgaaaacgaaaaacacgAATGGAATGAAAACGTTAGTTTTCCAAGCTGATCCGGAGCCACTTGCTTAAA
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig24   595256 148 -  1162296 ACTCACGATAACTTTGAGTTCTTTGGACTTGATCTCGTTTTGCAGCAAACCAAGAAAAACACACAAATTGCAAGACTtatgaagacgaagaagatgaatgGGATGAAGACGTTCGTTTTCCAGACAGAACCGGAACCACTTGCTAAAA
i caeRem4.Crem_Contig24 I 10 C 0
s caeSp111.Scaffold412     31248 142 +   118955 ------GAtaattttgatgtttttggCGAAGCTCTTGCTCTACAGCATACCATGAAGAAAACGCAACTAGCAAGACCAATGAAGATGACGAACAGGAAGGGGATAAAAATGTTAGTTTTCCAAACTGAGCCAGAACCGCTTGCTGGAA
i caeSp111.Scaffold412  C 0 I 35
s caePb3.Scfld02_62       104413 148 +   783054 ACTCacgaaagttttgaactttttgttgcaGTCCTAGTCTTGCAGCAAACCAGGAAGAAAACACAAACAGCCATTcctatgaaaatgaagaaaacaaatggaataAACACTTTTGTCTTCCAAACTGAACCAGATCCACTAGCTGAAA
i caePb3.Scfld02_62     C 0 I 40
s caeJap4.Scaffold17495    95194 148 +   161274 ACTTACGTGAGCTTCAATTCTTTTGGCGTTGATCTAGTTTTACAGCAGACAAAAACAAAAGTCAGCAATGATAGTCCAACAAATGTGAAAAGTAGAATGAAGAATGTAGTGCTCGACTTCCACGATGATTTATATTTTgcttctgtat
i caeJap4.Scaffold17495 C 0 C 0

a score=-8739.000000
s ce10.chrX               846903 35 + 17718866 TTTTA----TTTTGGCTTCAGACTAAACTTCA--------------------CATTAAA-
s cb4.chrX              21268192 24 - 21540570 TAAAA--------GGTTT---------CTTGAGT------------------TGTTTGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   595404 30 -  1162296 GATGACAAATCATATTCC---------CTTGA--------------------CACCTAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    95342 37 +   161274 --------------tttt---------ttttaatagtatgtagcaaagaatgtagcaaag
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       104561 40 +   783054 I
e caeSp111.Scaffold412     31390 35 +   118955 I

a score=1042.000000
s ce10.chrX               846938 5 + 17718866 AAAAA
s cb4.chrX              21268216 5 - 21540570 GGTTA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   595434 5 -  1162296 AAAAC
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62       104601 5 +   783054 AAAAA
i caePb3.Scfld02_62     I 40 C 0
s caeJap4.Scaffold17495    95379 5 +   161274 aaAAA
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     31390 35 +   118955 I

a score=215630.000000
s ce10.chrX               846943 568 + 17718866  
s cb4.chrX              21268224 643 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   595442 599 -  1162296  
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold412     31425 520 +   118955  
i caeSp111.Scaffold412  I 35 C 0
s caePb3.Scfld02_62       104606 758 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    95384 475 +   161274  
i caeJap4.Scaffold17495 C 0 I 117

a score=-4735.000000
s ce10.chrX               847511 41 + 17718866 TTATGAGTGTTTTAATGGCGGTAATGGAATAGTTTCTGGTC
s cb4.chrX              21268867  7 - 21540570 ----------------------AATGGTG------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   596041  2 -  1162296 ----------------------AA-----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       105364 16 +   783054 ------------------CAGTAATGGTGTGGGT-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    95859 117 +   161274 I
e caeSp111.Scaffold412     31945  0 +   118955 C

a score=-23096.000000
s ce10.chrX               847552 46 + 17718866 GTATTTTTGAATTG-GTCAGTATA--AAAAAGAGTGGAATCTAGAT--------GTT--------------------------
s cb4.chrX              21268874 27 - 21540570 ------------------------------AGACTAGATCTTCGGTGTCTTCAGAAT--------------------------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   596043  8 -  1162296 -----------------------------------------TCGGC--------AGT--------------------------
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold412     31945 19 +   118955 ------------------------------aaaatttctttttgac--------agg--------------------------
i caeSp111.Scaffold412  C 0 I 4
s caePb3.Scfld02_62       105380 23 +   783054 --------------------------AATGAAAACAGCACAATGAT--------AGT--------------------------
i caePb3.Scfld02_62     C 0 I 13
s caeJap4.Scaffold17495    95976 69 +   161274 ------GTgatttgaaataatttagcgatgaaaatgaaatccgcAA--------AGTACtaggtttcgtggagcgcacttgtt
i caeJap4.Scaffold17495 I 117 C 0

a score=-43360.000000
s ce10.chrX               847598 110 + 17718866 --------TCTGAGACGGATGTAATAAATAAATA-----GGTTT----------------TTTTTAAAGTTGGTT-----GGTGC----AACGTAATA----------------------AAAATCTGTTGGTG-CGTAACCCCGTTATATATTTC----------------CAAATCAATCTACCA
s caeRem4.Crem_Contig24   596058  29 -  1162296 --------GGTAAAACTATTCTA--GAGTCAATT-------------------------------------------------------------------------------------------------------------------AACTC---------------------------------
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold412     31968  19 +   118955 -------------------------gaataaa---------------------------------------------------------------------------------------------------------------------aaatttt--------------------------cacta
i caeSp111.Scaffold412  I 4 C 0
s caePb3.Scfld02_62       105416  59 +   783054 -----------GGAACAGATTCA--GAACAAATT-----------------------------------------------------------TCATA----------------------AACAT-----------Gcaat----tgtcaaatttt----------------taa---aaagtactA
i caePb3.Scfld02_62     I 13 I 10
s caeJap4.Scaffold17495    96045 185 +   161274 tttttcgcgaatggacaatatta--tTGGAAATCTTAGagatttcacattttttgttgtatttttacACTCGCTTCACAGCGTGctgttaaactgatacgaaaaggagacgcagagaagcagagtgtgaGGATGATGTTATTTTATAGCGACTCTTGCcgaatagacgcagacaagcaaccttacca
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21268901   9 - 21540570 I

a score=885874.000000
s ce10.chrX               847708 1525 + 17718866  
s cb4.chrX              21268910 1538 - 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24   596087 1546 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     31987 1520 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       105485 1525 +   783054  
i caePb3.Scfld02_62     I 10 C 0
s caeJap4.Scaffold17495    96230 1718 +   161274  
i caeJap4.Scaffold17495 C 0 C 0

a score=-24917.000000
s ce10.chrX               849233 134 + 17718866 CCTGAAAAAGTTGttataaaaattttttttttaaGTATTTGGTTTGTTATGTTATAGCCAGATATTGACCGGGTAGTTTTTTGTTAAA--AAATTATTTGGGTTCGC---GAT---------TATTCCAACAGTATAATCAAA-----ACTAA
s cb4.chrX              21270448  45 - 21540570 gctgaaaaca--------------------------------------------------------------------ttttgatcaC--AAATGGAAAATGTTTAC---AGT-----------------------------------ACTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   597633  54 -  1162296 CCTGAAAAC----------------------------------------------------------------------TCGTATAAT--AGTTTCTTGTTATCTAC---AAC----------------------TAATTATGCTA--ACTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       107010 102 +   783054 cctggaaaaatc-------agaatttttgaaaaaattttc------------------------------------tcttttcattacggaaattttcaaaacttat---aatctgaatatttatttt-----tttcatcctaCTATTGCTCA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    97948  45 +   161274 -----------------------------------------------------------------------------TCTAAAATAAA--CAacggtatttatttatttaaac--------------------tGCCAT---------ACTAA
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     33507   0 +   118955 C

a score=139167.000000
s ce10.chrX               849367 205 + 17718866 CCGGAACATTAATTCTTGGTATGTGCTGTACAACCATTTTCAAAACAGCTGTGCCTTCTCCCAGTTCATTTGTCGATCTACACTCGAAATCTCCGCTCATTGAGCTGTCAACTCGGATTGGCCAGATTTTTCCCTGATATCGTTCCCCTGACGCAATATGCTT------------------------------------------------CCATTCATAACTATGAGCTGGGGGATTTG-AAGCTGAGTTGCA
s cb4.chrX              21270493 205 - 21540570 CAGGTACAGTAATTTTTGGAGTATGCTGCACAACCAACTTCAACAAAGACGAACCTTCTCCAAGTTCATTGGTACCGCGGCATTCGAAGTCGCCATCCATTGAACGGTTTACATAAATTGGCCACACTTTACCTTGATATCTGTCACCAGATGAGATATGTTT------------------------------------------------CCATTCGTAACTATGGGCTGGTGGATTCG-CAGCAGCGTTACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   597687 205 -  1162296 CCGGTACAGTGATCTTTGGAGTGTGCTGCACCACCAACTTCAAAACAGATGTCCCTTCTCCCAACTCATTTGTCGCCCGACATTCGAAATCTCCACTCATAGAACTATCAACTCGAATCGGCCAGACTTTTCCTTGATACCGGTCTCCGGATGAAATATGCTT------------------------------------------------CCACTCATAACTGTGTGCTGGTGGGTTGG-AAGCAGCATTACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     33507 205 +   118955 CTGGTACACTAATCTTTGGAGTGTGCTGCACTACCAGTTTGAGTACAGCGGCTCCTTCTCCTAACTCATTAGTAGCTCGACACTCGAAATCTCCACTCATTGAACTATCTACTCGAATTGGCCAGATTTTCCCTTGGTATCTGTCTCCCGATGAGATTTGCTT------------------------------------------------CCATTCATAACTGTGTGCCTGTGGGTTAG-AGGCAGCGTTGCA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       107112 206 +   783054 CCGGGACTGTAATTTTTGGTGTGTGCTGCACGACTAATTTCAGGGTAGCTGTGCCTTCTCCCAATTCATTTGTTGCTCTGCATTCAAAGTCTCCACTCATTGTGCTATCCACTCGAATAGGCCAAACTCTTCCTTGATATCTATCACCAGATGAGATTTGTTT------------------------------------------------CCACTCATAGCTGTGTGCCGGAGGATTGGAAAGCTGCATTACa
i caePb3.Scfld02_62     C 0 M 330
s caeJap4.Scaffold17495    97993 253 +   161274 CCGGCACTGTGACTTTCGGGGCGTGTTGCACAATCAATGTTAGGGTAGACCTAGTTTCGCCTATCTCATTAACGGCTTTGCACTCAATGTCTCCATTCATAGATTTGTGAACCTTAAAAGGCCATACTTTTCCTTGATATCGCTCCTCTAGTTGCAAGTGTTTCCTGTTTTAAACAAtgtaaacttatttttttgtttgtttaaaaatttaccaTTCGTAACTGTGCACTGCCGGATTTG-CTCTTCCATTACA
i caeJap4.Scaffold17495 C 0 C 0

a score=80199.000000
s ce10.chrX               849572 175 + 17718866 AGTTAAATTGACCAGCTCTCCTTCTTCTACTGACAAGTGAGTGAGGTTTTCGGTTGGCGTTACGAAGACGACTGGTTTGTAGAGCACGTTAAGCTGGGAACTTTTCACTTGTTTTGTTTCTCCGCCAAGCATGGCTCTGTTAGTGACGTCACACTGCACGGATTTTCCGTCATCG
s cb4.chrX              21270698 175 - 21540570 GGTCAAATTGACCAGTTCTCCTTCTTCTACTGACAAATGTGTGAGATTTTCCGTCGGTGTCACAAAAACAATCGGTTTGTAGAGAACGTTCAATTGAGAACTGCGGACTTGTTTTGTTTCTCCAGCGAGCATTGCTCTATTGGTGACATCGCATTGCACAGATTTTCCATCGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   597892 175 -  1162296 GGTGAGATTGACCAGTTCCCCTTCTTCAACAGACAAGTGAGTCAAGTTTTCAGTTGGGGTCACAAAAACGATTGGTTTGTAGAGAACATTCAGGTGGGAACTTCTGACTTGCTTGGTTTCACCATCTAGCATAGCTTTGTTGGTGACAGCACACTGAACTGATTTTCCATCATCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     33712 175 +   118955 AGTCAGGTTGACcacttctccttcttctacCGATAAATGAGTCAAGTTTTCTGTTGGTGTTACAAACACATTAGGTTTGTAGAGAACGTTCAGATGTGAGCTCCTGACTTGCTTCGTTTCACCATCAGGCATAGCTTTGTTGAATACAGAGCACTGTACGGATTTTCCGTCATCG
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    98246 175 +   161274 AGTCAAATTCACATAGTTGCCTTCTTCAACAGACAAATGCGTTAAATTTTCCGATGGAGAAATATCAATAATTGGCTTGTAGAACACAACGAGTTCCCTACTTTTGGTTGTCTTTACTTCTTCCTCGGTAATTGCTTCATTCTTCACACTGCATTCAATATATTTTTCGTTATCT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       107318 330 +   783054 M

a score=36597.000000
s ce10.chrX               849747 188 + 17718866 CTTGAGGTTACGCGGAAACTGAAATAA----TTGAATT----GTTAGTAGAATTTTAAAGGGAGGttatttaaattataatctaattttttttaaaCTCACTGTAACAAACTTTCGGTTGCACCGTCCCTAAACTGAGTTGTAAAAATAGCTGAACTCGCAATTGTATCATTCGGTAGTGTCCATCTGAAA----------AAAAT
s cb4.chrX              21270873 167 - 21540570 CTTGAAAACACTCGGAAGCTGAAAAGAG---ACAGAATAATGGTCAGA--------------ACGTGACATGA------------------AAAACCATACTGTAGCAAGCTCTCTGTTGCTCCATCCCGATGTTGAGTTGTGAACAATGTTGAACTGGCGATAGTTTCGTTTGGCAGGGTCCaact--aaaatttcat--aatat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   598067 173 -  1162296 CTGGAGGATACACGGaagctgaaattc----agaaaatgaaggTTAGGTTACCC--------AGGTGACTT---------------------ATTTCTTACTGTAGCAAACTCTCAGTCGCTCCATCTCTGAACTGTGTGGTGAAAAGTGCTTCACTAGCAGTAGTGTCATTTGGAAGGGTCCATCTGAAGAATTCGATTGAGTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     33887 161 +   118955 GTCGACAATACTCGGAAGCTGcgattc----aaaaagttatcattTTT--------------AAGTAATCTAA----------------------ACTTACTGTAGCAGACTTTCTGTTGCTCCATCTCTAAACTGGGTGGTAAAAAGTGCAGAGCTTGCCAACGTGTCGTTTGGGAGCATCCATCt-aaaatttct----caatt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       107648 168 +   783054 CTGGCGGACACTCGGAAACT------------AAAAgt----attttt--------------aatgaaactaAACAATGAAATAG----TTCAGCACTCACTGCAACAAACTTTCAGTTGCCCCATCTCTGAACTGTGTTGTGAAAAGTGAAGGACTTGCTAATGTGTCATTTGGAAGAGtccatctggaaaatttt----ggttt
i caePb3.Scfld02_62     M 330 C 0
s caeJap4.Scaffold17495    98421 157 +   161274 TCTGCAGATACTCGAAAACTGAATTGGGAGTTTAAAATATATGTT-----------------ATTGAATTTAG----------------------GCTTACTGTAGAATACTTTCTACTGTTCCATCTTTTTCGAAAGTGTTAAAAATAGAGGAACTCGCGCTTGTGTCATTTGGTAATTTCCAGCTGAAACAGGT----------
i caeJap4.Scaffold17495 C 0 I 222

a score=-5029.000000
s ce10.chrX               849935 27 + 17718866 TACTTCTAACAATCCCCGAACTTTTCG
s cb4.chrX              21271040 22 - 21540570 tacaacgaatatt-----aaaattgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   598240 20 -  1162296 TCCCTCTggta-------aacttttga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34048 25 +   118955 ccaCTGAGTGATTGAT--AACCTTTGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       107816 20 +   783054 tttttctgttact-------tCTCTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    98578 222 +   161274 I

a score=105418.000000
s ce10.chrX               849962 127 + 17718866 AGA-ACTCACGTGAATGTTGGCTGTGGGCTTCCACCAACCGAGACACACTTGGCAGTCATAAAGTCTCCTTCAATTACGCTCTCGGAAGGTGTAGTGCTAATAATTGGGTCACCAGGTGGAACTGAAA
s cb4.chrX              21271062 125 - 21540570 aaa---ttacgtAAAGGTAGGTTGAGGGCTCCCACCAACAGAAACACATTTGGCCGTCAAAAAGTCTCCTTCAATTACGCTCTCCACAGGCGTAGTGCTTATAATTGGGTCGCCAGGTGGAACTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   598260 125 -  1162296 aac---ttacGTGAACGTTGGTTGTGGGCTCCCTCCAACCGAGACACACTTGGCTGTCATGAAATCTCCTTCAATAACGCTTTCGGAAGGTGTAGTGCTTATAATTGGGTCACCAGGTGGAACTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34073 124 +   118955 ACG----TACGTGAAAGTTGGCTGTGGACTTCCACCTACGGAAACACACTTGGCAGTCATGAAGTCTCCTTCAATTACGCTCTCGGAAGGTGTAGTGCTTATAATTGGGTCGCCAGGTGGAACTGAAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       107836 128 +   783054 ACAAACTAACTTGAAAGTTGGTTGTGGACTCCCACCAACCGAGACACATTTAGCTGTCATAAAATCGCCTTCAATTACACTTTCGGATGATGTAGTGCTAATAATCGGGTCTCCCGGAGGaactgaaa
i caePb3.Scfld02_62     C 0 I 80
s caeJap4.Scaffold17495    98800 127 +   161274 aaa-ccttACCTAAACTTTGGATACGGATTGCCGCCTGTAGAAACACATTTTGCAGAAACAAAATCACCTTCAATGATTTTATCGGCAGGATCAATAATTATACTTGGATCACCAGGAGgaactgaaa
i caeJap4.Scaffold17495 I 222 C 0

a score=3109.000000
s ce10.chrX               850089 16 + 17718866 TATGTATTTCATTATT
s cb4.chrX              21271187 16 - 21540570 TATGTGCTCAATTATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   598385 16 -  1162296 TGTGTATTTCATTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34197 13 +   118955 --tatatttcgtt-tt
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    98927 16 +   161274 caaaaatatcaataTT
i caeJap4.Scaffold17495 C 0 I 846
e caePb3.Scfld02_62       107964 80 +   783054 I

a score=-3584.000000
s ce10.chrX               850105 31 + 17718866 TGACATGAA-------CATG--AGTGGTAGTAA-----TT-ATTT-T
s cb4.chrX              21271203 36 - 21540570 TGAGTAGCA-ATAAAACATGACACTGGCAGCaa--------attt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   598401 42 -  1162296 TGAGTAGTA-GTAAAACATG--AGTGGAGGGAAAGTAATT-ATTTC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34210 37 +   118955 tatgTAGTATGTATTACACG--------AACAAGGTAATTAATGT--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       107964 80 +   783054 I
e caeJap4.Scaffold17495    98943 846 +   161274 I

a score=4866.000000
s ce10.chrX               850136 19 + 17718866 -GAAATTGACTTGTTGCGTT
s caeRem4.Crem_Contig24   598443 20 -  1162296 ACAAATTGACTTGTTGCGTT
i caeRem4.Crem_Contig24 C 0 I 225
s caeSp111.Scaffold412     34247 19 +   118955 -CAAATTGACTTGTTGCGTT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       107964 80 +   783054 I
e caeJap4.Scaffold17495    98943 846 +   161274 I
e cb4.chrX              21271239  0 - 21540570 C

a score=100.000000
s ce10.chrX               850155 1 + 17718866 G
s caeSp111.Scaffold412     34266 1 +   118955 G
i caeSp111.Scaffold412  C 0 I 95
e caePb3.Scfld02_62       107964 80 +   783054 I
e caeJap4.Scaffold17495    98943 846 +   161274 I
e cb4.chrX              21271239 0 - 21540570 C
e caeRem4.Crem_Contig24   598463 225 -  1162296 I

a score=0.000000
s ce10.chrX               850156 666 + 17718866  
e caePb3.Scfld02_62       107964  80 +   783054 I
e caeJap4.Scaffold17495    98943 846 +   161274 I
e cb4.chrX              21271239   0 - 21540570 C
e caeSp111.Scaffold412     34267  95 +   118955 I
e caeRem4.Crem_Contig24   598463 225 -  1162296 I

a score=334.000000
s ce10.chrX               850822 37 + 17718866 GAACAATATTTGATCGCATATTTGAAAATCACCTTAT
s cb4.chrX              21271239 31 - 21540570 gaacgaaatttgTTGGC------GAAgataaatgttc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       107964 80 +   783054 I
e caeJap4.Scaffold17495    98943 846 +   161274 I
e caeSp111.Scaffold412     34267 95 +   118955 I
e caeRem4.Crem_Contig24   598463 225 -  1162296 I

a score=-3401.000000
s ce10.chrX               850859 17 + 17718866 -------CAA---TTGAAAAA-TGCTAA
s cb4.chrX              21271270 13 - 21540570 --------aaattttaaagaa-------
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold412     34362 12 +   118955 -------caa---ttaaaaaag------
i caeSp111.Scaffold412  I 95 C 0
s caeJap4.Scaffold17495    99789 15 +   161274 CGGTTAACAA---ATAAA----------
i caeJap4.Scaffold17495 I 846 C 0
e caePb3.Scfld02_62       107964 80 +   783054 I
e caeRem4.Crem_Contig24   598463 225 -  1162296 I

a score=-1014.000000
s ce10.chrX               850876 3 + 17718866 TCT--
s caeSp111.Scaffold412     34374 1 +   118955 --t--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       108044 3 +   783054 TTT--
i caePb3.Scfld02_62     I 80 C 0
s caeJap4.Scaffold17495    99804 3 +   161274 --TGA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21271283 3 - 21540570 I
e caeRem4.Crem_Contig24   598463 225 -  1162296 I

a score=209359.000000
s ce10.chrX               850879 604 + 17718866  
s cb4.chrX              21271286 644 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   598688 495 -  1162296  
i caeRem4.Crem_Contig24 I 225 C 0
s caeSp111.Scaffold412     34375 494 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       108047 493 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    99807 508 +   161274  
i caeJap4.Scaffold17495 C 0 I 27

a score=12820.000000
s ce10.chrX               851483 33 + 17718866 AACCGCTTCCCTCCCATCTGGTTGGTAGAATTC
s cb4.chrX              21271930 33 - 21540570 AATCTTTTTTCCGTCATCTGGTTGGTAGAATTc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   599183 33 -  1162296 aacCTCTTCACTTTCATCGGGTTGGTAGAATTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34869 33 +   118955 atCCTTCTTGATTTCATCTGTATGGTAGAATTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       108540 33 +   783054 ggttttttgaatttcatctgCCTCTCAGAGttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   100315 27 +   161274 I

a score=-17331.000000
s ce10.chrX               851516 62 + 17718866 CTCTGAAA------TTATTTA--AACTTTGTAAGA------------CTGTATTAAACAAAAAAAATAAT----GAGAATGA----AA-AG
s cb4.chrX              21271963 61 - 21540570 cactgaaaacttttttgataa---caCTGGTGAAC----------------AATGTTCAGAGCAA--TAT----GCGTCAAG----AA-AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   599216 59 -  1162296 CTCTGAAA------TTGGTAA--TTATGGGTTcca----------------aataaacagaaaaa---at----gagtaaaagtacaa-ag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34902 40 +   118955 CTCTGGAA------Aca-----------------------------------ttgaattgagaaa--aat----aaataaaa----aatag
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       108573 56 +   783054 acctgaaa------acaaaaa--ttaattttt--------------------gtgaGCCGGAAAA--AATGGTGGAATACGG----TA-AG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   100342 74 +   161274 TTCTGAAA------TTattaaagttgtttttttggatAATGTGTCACATAGTTTTTACaagaaac--aat----aaaagttA----AA-AG
i caeJap4.Scaffold17495 I 27 I 3449

a score=-26290.000000
s ce10.chrX               851578 134 + 17718866 GATTACA-------AGAAGTTGAACATTGAATTGAAAATGAAAAACAAGACAGAAAGTATCAAAATATC--ATTAAATG--ACCTTTTGAAAATAATCGAATTTGATTTAAAAAAACAATCAGAAGGGTTTTTTTTCAAAATTAG-
s cb4.chrX              21272024  71 - 21540570 TATAGTATGG----AGAAGTAGAACTG------------GAAA---GAAATAAAGAGTATCATACCGTT-TTCATGATGAACCAG-------------------------------------------------TTCAga------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   599275  76 -  1162296 aatcaaataa----aaaagacgAAC--------------GAGC---ACAATAACAAGGACAATGCAATCAGTCAAAACG--Ccagtttgaaaa-----------------------------------------ttcaaa------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34942  84 +   118955 aaacgtTTG-----AGAGACATAATGTAATACC---AGTGAGCTTGGAAAGATAAACTGCAATGATAAC--ataaaaag-------ttgaaga--------------------------------------------agaaatta-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       108629 105 +   783054 ACAAGTGTGAAAATAGAAGCAGAACAAAACacc------gaattgaaaaatgttgaggtCACTAATGGT--TTGAAAcg----gatttgaaaat-------------------gaataatc----------ttattcaaaaatcag
i caePb3.Scfld02_62     C 0 I 349
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-5180.000000
s ce10.chrX               851712 514 + 17718866  
s cb4.chrX              21272095 381 - 21540570  
i cb4.chrX              C 0 I 88
s caeRem4.Crem_Contig24   599351 396 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35026 411 +   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=683.000000
s ce10.chrX               852226 15 + 17718866 ATTAAAATTTAGAAG
s caeRem4.Crem_Contig24   599747 11 -  1162296 ----ATTttaagaag
i caeRem4.Crem_Contig24 C 0 I 104
s caeSp111.Scaffold412     35437 12 +   118955 ---AAGATTTAGATG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272476 88 - 21540570 I

a score=264.000000
s ce10.chrX               852241  8 + 17718866 ------------TTTGCAAC
s caeSp111.Scaffold412     35449 20 +   118955 AAATTCATACTTTTTACAAC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272476 88 - 21540570 I
e caeRem4.Crem_Contig24   599758 104 -  1162296 I

a score=0.000000
s ce10.chrX               852249 537 + 17718866  
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272476  88 - 21540570 I
e caeSp111.Scaffold412     35469   0 +   118955 C
e caeRem4.Crem_Contig24   599758 104 -  1162296 I

a score=1055.000000
s ce10.chrX               852786 23 + 17718866 TTGTCGCAATTCATATTGAAAAG
s caeSp111.Scaffold412     35469 22 +   118955 TTGTCGCACttcat-tcgaagaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272476 88 - 21540570 I
e caeRem4.Crem_Contig24   599758 104 -  1162296 I

a score=-1335.000000
s ce10.chrX               852809 29 + 17718866 CTGTCAGAATGGCAATGAGGTGAGGGGAC------
s cb4.chrX              21272564 29 - 21540570 CTATCAAAATGGGAACAATGCCAGAATAT------
i cb4.chrX              I 88 C 0
s caeSp111.Scaffold412     35491 22 +   118955 -------------atttATGAATGCATATTTCATG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       108734 349 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e caeRem4.Crem_Contig24   599758 104 -  1162296 I

a score=71437.000000
s ce10.chrX               852838 175 + 17718866 GTGCTTTTGGAGGCT-----ACT------CTACCTAACCACCATGTCC---GCGATTATTTTTCGGAGAG--------AGGGAGAC-------------CGAGAGAG----------AGAAAAGGG-ACTGACTGTGGCTAATTATG---AGACGTAATTACGGGGGGTGCGACGC-----GAAGGACTTAGAAACAA--ATAAATGGTAGGGGCG---------------------AACGAAAGAACATAC
s cb4.chrX              21272593 220 - 21540570 -TGCTTTTGGAGGCT-----ACCACCT--CAACGTAACCACCATGTCC--TGCGATTATTTTTCGGAAAGGTG-----GTGGAAAGGTaggcgaaa---aaagaaaagac-------ggAGAGGGGAACTGAATGTGGCTAATTATAATTAGACGTAATTACG---GGTGCGACGC----GGGAGGACTTAGAAACAAATATAATTGGCAGGGGTGGGCCAGAGGTGGTGAAAGGGGAACAGAAGAGCAGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   599862 210 -  1162296 GTGCTTTTGGAGGCT-----ACTACCT--CAACGTAACCACCATGTCCCGTGCGATTATTTTTCggagaggaa-----agagaaaa--aggtggGATGGAGAGAGGGGGCTGCTGGAGGTAGGGGGAACTGACTGTGGCTAATTATG---AGACGTAATTACG---GGTGCGACGC-----GAAGGACTTAGAAACAA--ATAAATGGTAGGGGTG---------------AAAAGGAACAGAAGAACAGAC
i caeRem4.Crem_Contig24 I 104 C 0
s caeSp111.Scaffold412     35513 188 +   118955 ------------GCTACTGGACTACCTTCCTACGAAACCTCCATGTCC---GCGATTATTTTtcggag----------aaagagaa--tagtGAGG---TAGGAGAA----------GGTGAGGGGCACTGACTGTGGCTAATTATG---AGACGTAATTACG---GGTGCGACGCGGTAgggggggCttagaaacaa--ataaatggTAGGGGAA---------------GGGGGTGA-AAAGGAACAGAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       109083 194 +   783054 GCGCTTTTAGAGGTTACTGGACTACCT--CGACATAACCACCATGTCC---ACGATTATTTTTCGGAGGGAGTGTATTAGAGAGAA--CAGTGAAG---AAAGAGAT----------CGAGAG----ATTGACTGTGGCTAATTATA---AGACGTAATTACG--CGGTGCGATAT-------GAGACTTAGAAACAA--ATAA-----AGGTGGG---------------GAGGACGACAAAAGAACATAC
i caePb3.Scfld02_62     I 349 I 152
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-2930.000000
s ce10.chrX               853013 32 + 17718866 AGCCCCACCGACAATTCAT--TCACACAAGCCCC-----
s cb4.chrX              21272813 29 - 21540570 -ATAGGGCGAACGATTCAT--TCGCACAG-------GCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   600072 38 -  1162296 -ATAGAGCGAGCGATTCATCCCCGCACAGGCAGCCAGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35701  9 +   118955 ---------------GCAT--TCACA-------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       109277 152 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=20833.000000
s ce10.chrX               853045 29 + 17718866 AGCAGCACCAATTAAAAATTCGTTAGCCG
s cb4.chrX              21272842 29 - 21540570 AGCAGCaccaattaaaaatttgcttgctg
i cb4.chrX              C 0 I 1194
s caeRem4.Crem_Contig24   600110 29 -  1162296 AGCAGCAccaattaaaaattcatttgCTA
i caeRem4.Crem_Contig24 C 0 I 22
s caeSp111.Scaffold412     35710 29 +   118955 AGCAGCACCAATTAAAAATTCGTTAGACA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       109429 29 +   783054 AGCAGCACCAATTAAATATTCATTCGCCA
i caePb3.Scfld02_62     I 152 C 0
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-1580.000000
s ce10.chrX               853074 22 + 17718866 -GTGTTCC-TATTTAGTTGTTTTT-
s caeRem4.Crem_Contig24   600161 24 -  1162296 -GTGTTCCCTTGAAAGGTGTGTTGT
i caeRem4.Crem_Contig24 I 22 C 0
s caeSp111.Scaffold412     35739 24 +   118955 CATGTTTTGTTCGGAAgtgttcct-
i caeSp111.Scaffold412  C 0 I 26
s caePb3.Scfld02_62       109458 23 +   783054 GGaccatt-ttctgaattgttcTT-
i caePb3.Scfld02_62     C 0 I 1931
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272871 1194 - 21540570 I

a score=3411.000000
s ce10.chrX               853096 12 + 17718866 GGTTTCAGATTC
s caeRem4.Crem_Contig24   600185 12 -  1162296 GGTTTCAGATTC
i caeRem4.Crem_Contig24 C 0 I 2555
s caeSp111.Scaffold412     35789 12 +   118955 GGTTTCAGATTC
i caeSp111.Scaffold412  I 26 C 0
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272871 1194 - 21540570 I

a score=100.000000
s ce10.chrX               853108 1 + 17718866 C
s caeSp111.Scaffold412     35801 1 +   118955 C
i caeSp111.Scaffold412  C 0 I 1497
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272871 1194 - 21540570 I
e caeRem4.Crem_Contig24   600197 2555 -  1162296 I

a score=0.000000
s ce10.chrX               853109 1903 + 17718866  
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21272871 1194 - 21540570 I
e caeSp111.Scaffold412     35802 1497 +   118955 I
e caeRem4.Crem_Contig24   600197 2555 -  1162296 I

a score=2290.000000
s ce10.chrX               855012 59 + 17718866 GTGGTCACTAATCGTTGAGAAG----TAAGCACAAATTTGCGTGAGTTTGTGCAAAAGATTAA
s cb4.chrX              21274065 62 - 21540570 gtGGTCACTAACC-CAAAGAAAACGACGAGGAAAAGCTTGCGTGAGTTTGCTCAGGAGATTAA
i cb4.chrX              I 1194 I 222
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e caeSp111.Scaffold412     35802 1497 +   118955 I
e caeRem4.Crem_Contig24   600197 2555 -  1162296 I

a score=0.000000
s ce10.chrX               855071 670 + 17718866  
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274127 222 - 21540570 I
e caeSp111.Scaffold412     35802 1497 +   118955 I
e caeRem4.Crem_Contig24   600197 2555 -  1162296 I

a score=100.000000
s ce10.chrX               855741 1 + 17718866 C
s caeRem4.Crem_Contig24   602752 1 -  1162296 C
i caeRem4.Crem_Contig24 I 2555 C 0
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274127 222 - 21540570 I
e caeSp111.Scaffold412     35802 1497 +   118955 I

a score=862.000000
s ce10.chrX               855742 25 + 17718866 ACACATCAAAGAGA--AACTAAG--ACGT
s caeRem4.Crem_Contig24   602753 21 -  1162296 ACACATCAAAGAGA--AAGTAAA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     37299 25 +   118955 ACACATCAAAGAAACGCGGTGACTG----
i caeSp111.Scaffold412  I 1497 C 0
e caePb3.Scfld02_62       109481 1931 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274127 222 - 21540570 I

a score=273.000000
s ce10.chrX               855767 1 + 17718866 T
s caeRem4.Crem_Contig24   602774 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       111412 1 +   783054 T
i caePb3.Scfld02_62     I 1931 C 0
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274127 222 - 21540570 I
e caeSp111.Scaffold412     37324 0 +   118955 C

a score=32337.000000
s ce10.chrX               855768 186 + 17718866 --ATGACTTATTAGTGTTCTAGAG------------------GTACACCGTTTCTACAGGTCAATGCGCATATATTTGCTCAGACTCTG-TCTT--GCACCGC--AGATTGCTCTCC------AG---CCAAGAGTTTTGGAAAC-CACATGCGGAAAGGGTGGGGGGGGGGGGGGGGCATACATAAATAAATGTGATGTTAATATGAAGTGTACTAGTAC-------------------
s cb4.chrX              21274349 212 - 21540570 ATGACCATTATTAGTTATCTAAAAGTTGGTGGAACACCGG--GTACACATTTCCTACAGGTCAATGCGC--ATATTTGCTCAGACCCTA-TCTC--ACTTGGCTGCGATTGCTCTTCACCGCCAG---CTAAGGAGTTTTCGAACCACCGTGCGGAAA------------------CGCATATACATATAAATATGATGTAAATATGAAATATCTTAGTACTTTCAGTTCAGGCGATCTC
i cb4.chrX              I 222 C 0
s caeRem4.Crem_Contig24   602775 197 -  1162296 --GTCAATTATTAGTGTTCTAGAG------GGTACAC--------CACCATTCCTACAGGTCAATGCGC--ATATTTGCTCAAGCCTCC-TGTC--TTGGTGCTGCGATTGCTCTTCACCA-GAG---CCAAGAGTTTTCAAAACCCGCATGCGGAAA------------------GGCATACATAAATAAATGTGATGTTAATATGAAGTATACTAGTAGTAGTGCTTTAGTTTAACTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     37324 184 +   118955 --TCCAATTATTAGTGTTC------ATAGCGGTAAAT-GGTAGTACACCATTGCTACAGGTCAATGCGC--ATATTTGCTCAGACCTCTGTCTT--TCTTAACCGCGATTGCTCTTCAACCTGAGACCTCCTGGAGTTTTCGAAC------GGGGAAC------------------GACATATATAAATAAATGTGATGTTAATAGGAAGTATACGAGTAC-------------------
i caeSp111.Scaffold412  C 0 I 93
s caePb3.Scfld02_62       111413 167 +   783054 --ATGAACTATTAGT----------ATATTAGAAAAA-GG--GAACACCGTTTCTACAAG--AGGTAGA--CTGTTTGCTCAAACCTCTGTCTTGACCATAA---CAATTTCTCT--------AGTTTCCGCATACTTCCCAAAT------GCGGGAA------------------AGCACATAGAAACACATTTTATGTTAATAGTAAGTACATTAGTAC-------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-10288.000000
s ce10.chrX               855954 72 + 17718866 AACCATAAGGAAGTCGGT-AAGATCTCATCTAGGGATTTAGGGCAAAAGTTTGAAAATCTTGA----GAAAAAGTTT------------------
s cb4.chrX              21274561 56 - 21540570 AA----------GTCAATCAAAGTTTTATTTGGGGGA-------ATGGTCAGGCATGTCCTGA----AATAAAACTC------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   602972 65 -  1162296 AAACATAACG-GGTCAA--AACGTGAAATCTACGAGAT-----CTTGATTTCTAGTATTCAAA----ACTAAagttt------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       111580 79 +   783054 -----------TATCACTCAACCAcagatttgatgaaa-----aacagatATGGATGATAAAAATCTAATAGAGTTGTAAAAAGTAAGATCGTTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e caeSp111.Scaffold412     37508 93 +   118955 I

a score=51264.000000
s ce10.chrX               856026 135 + 17718866 -----AA--TTTTGATTCGCA---AAGTC--------TTCTCGGCAAAT---AGGG--CGATTGATGTCGATGATGATAATGTGGTGTTGATTCCTC-TGGGAGACCCCATCTGC-GTAAAGGGGCTTTGTCGTTTTAAACATAAGCATGCATAAAATGC
s cb4.chrX              21274617 129 - 21540570 -----AG--TTTT-GTCTCTATGCaa-----------tgcaaaaagaaaaataggg--cGATTGATGGTGATGATGATAATGTGGTG-TGATTCCTC-TGGGAGGCCCCATCTGC-GTTGGA-------GCCCTTTTAGACATAAGCATGCATAAACTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   603037 133 -  1162296 -----aa--ttttcatttttatctagACT--------TTTGCGGATGAAAATGGGA--CGAttgatgttgatgatgatAATGTGGTG-TGATTCCTC-AGGGAGGACCCATCTGC-GTTGGG-------GTCGTTTTAGACATAAGCATGCATAAACTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     37601 148 +   118955 AATTTAG--TATC-GTCTATATTGAAGTTTATTTCGgttccagaagaaa-ataggACCCGATTGATGTTGATGATGATAATGTGGTG-TGATTCCTCAAGGGAGACCCCATCTGCTACGAGG-------GTCGTTTTAAACATAAGCATACATAAACGGC
i caeSp111.Scaffold412  I 93 C 0
s caePb3.Scfld02_62       111659 138 +   783054 AATCAAAGCTTTT-GTTTGCATTGgcttt--------ttcttgaagaag---CAGTCTCAAttgatgttgatgatgataatGTGATG-TAATTCCTC-AGGGAGGTCCCATCTGC-ACAAGC-------GTAGTTTTAAACATGAGCATGCATAAGCTGC
i caePb3.Scfld02_62     C 0 I 1405
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=1205.000000
s ce10.chrX               856161 32 + 17718866 TCTTTTTAACAAAAAAAAGTGAGAGAGGGTAG-
s cb4.chrX              21274746 25 - 21540570 TTTTTGGGATAGaaaaaaaGGGGAT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   603170 32 -  1162296 TCTTTTTGAAAGGGAATAGAGGGAA-GAGTTGG
i caeRem4.Crem_Contig24 C 0 I 618
s caeSp111.Scaffold412     37749 30 +   118955 -ACTTTagaaagaaaggagaagGGA-GAGTCG-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-488.000000
s ce10.chrX               856193 3 + 17718866 AAA-
s cb4.chrX              21274771 3 - 21540570 CAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     37779 3 +   118955 -AAA
i caeSp111.Scaffold412  C 0 I 330
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e caeRem4.Crem_Contig24   603202 618 -  1162296 I

a score=953.000000
s ce10.chrX               856196 51 + 17718866 CCAAAGCTGGAAAAAAG---TTTTTTTTTCTAAAAAGTTTAAAAAATCTTGTTA
s cb4.chrX              21274774 54 - 21540570 GTcgagttgaaaaattggtcgtctttttttcaagaatactACAAAAGTTTATTA
i cb4.chrX              C 0 I 2014
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e caeSp111.Scaffold412     37782 330 +   118955 I
e caeRem4.Crem_Contig24   603202 618 -  1162296 I

a score=0.000000
s ce10.chrX               856247 1303 + 17718866  
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274828 2014 - 21540570 I
e caeSp111.Scaffold412     37782  330 +   118955 I
e caeRem4.Crem_Contig24   603202  618 -  1162296 I

a score=430.000000
s ce10.chrX               857550 72 + 17718866 AAATGA---AATGAAAATGAATAAGT--AAGTATTGTATTGTTAGGTGTT-TGGGAGAC--GCAAGCTCATAT---TCCGAAA
s caeSp111.Scaffold412     38112 83 +   118955 aaatgataCAACAGAAGACAATACGTCAAAGTATGAGCTGAGTAGGTACTATGGGAAATTTGCAAAACTATATATCCTCGACA
i caeSp111.Scaffold412  I 330 C 0
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274828 2014 - 21540570 I
e caeRem4.Crem_Contig24   603202 618 -  1162296 I

a score=1785.000000
s ce10.chrX               857622 147 + 17718866 CACTTGAAACTCTGATTTT----CATGC-AAACTTTGGAACACTTCAC----ACATAAACAAG-CACAGTTGTGAGAGTTCAATTGGTAT-CAGATTTCAAAATTCAAAACTGCTCAATTGTTTAATAAAACTCACTGATGGGTCTAACCGAGGGACT-------
s caeRem4.Crem_Contig24   603820 132 -  1162296 CACTTGAGAAT---AGTTT----CATGCAAAACGTCAAAACACTTCACCTGAACGAAAAGAAATCACATTCT-------------------Cgggtttcaaatttc----atttttgattcaattatAAAACTCACTGAT---TTCAGGGGGAGGGGAGGGTACA
i caeRem4.Crem_Contig24 I 618 C 0
s caeSp111.Scaffold412     38195 126 +   118955 CACTTGAGAAT---TACTTTGCATACACAAAACTTCACGAAATTT-------ACAGAAAGAAG--GCATTCTTCGA-----AAGTGGTGTGtgtgtttcaaatttt----catttcaatc--------aaaCTCACTGAT---TTCAAGCGGAGAGAT-------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I
e cb4.chrX              21274828 2014 - 21540570 I

a score=13127.000000
s ce10.chrX               857769 66 + 17718866 GTTGATGAT---GGTCAAAACCGCGAATC-AAACAATAAGCGGCTCTAGCGCGGAGCCC----CCCGGGGCGCC---
s cb4.chrX              21276842 65 - 21540570 GTCGATGA----TCTCAAAACTGTGAATC-AAACAATAAGCGGCTCTCGCTC----CCCTCGGCCATCAGCGCG---
i cb4.chrX              I 2014 C 0
s caeRem4.Crem_Contig24   603952 64 -  1162296 ATTGatgatt--tctcaaaactgtgaaTC-AAACAATAAGCGGCTCTCGCGC----CCC---GCCGGGGGCGCC---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38321 66 +   118955 ---GATGATTGAGATTAAAATTGTGAGTTAAAACAATAAGCGGCTCTCGCGC----CTT----CTACGCGCTCCCTG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       111797 1405 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=21932.000000
s ce10.chrX               857835 67 + 17718866 ----------------------------TTCGTCCGTGAGAAGATTTAGCCAACGATCAAACAAAGCAAGGAGTCCCTCTCTCTCCGGG---TGGGAA
s cb4.chrX              21276907 80 - 21540570 TTC-GTTTGCTCGCGCGCGCAGGGCGCCTTAGTCCGTGAGAAGATTTAACCAGCAATCAAACAAAAACGG--------------CAGGG---TGGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   604016 65 -  1162296 TTCGGTTCGTCTTCGTTCGT------------TCCGTGAGAAGATTTAGCCAACAATCAAACAAAA------------------CGGGG---TTAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38387 53 +   118955 ----------------------------TTCGTGTGTGAGAAGATTTAGCCAACAATCAAACAAAAA-----------------CCGGGGACTGAGAA
i caeSp111.Scaffold412  C 0 I 20
s caePb3.Scfld02_62       113202 50 +   783054 ----------------------------TTTGTCCGTGAGAAGATTTAGCCAACAATCAAACAAAAA-----------------CGGGG---TGGGAA
i caePb3.Scfld02_62     I 1405 I 27
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=-5545.000000
s ce10.chrX               857902 26 + 17718866 ------------GTGCGGGAGCCCCCC---------TCCCGTCCCTC
s cb4.chrX              21276987 21 - 21540570 ATGGAG--------------GCCGGTATTGGGAAA------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   604081 36 -  1162296 GTGGGGGGTCTAGGAGAGGAGCCGCTAAGGAAAAAG-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38460 15 +   118955 ------------gagagggaGCCGCTA--------------------
i caeSp111.Scaffold412  I 20 I 6
e caePb3.Scfld02_62       113252 27 +   783054 I
e caeJap4.Scaffold17495   100416 3449 +   161274 I

a score=118927.000000
s ce10.chrX               857928 150 + 17718866 AAGGTAGTCTCGTAAAACAATGTGACTAAAGCTGATGAGCAAACACAAATGACCAT-CTCCT--------TTGCCTCATC---CTTCG--CCACTTCTTCGACGATT-----------------TCGCGAAACAATAAACACGCCTCCGATGCACGAATTGACTCTC-AAAATGTGGAACTG
s cb4.chrX              21277008 156 - 21540570 AAGGTAGTTGCGTAAAACAATGTGACCAGAGCTGATGAGCAAACACAAATGACCATACCCCTTCACCacttcttctcgtttttcttcaaCCCAATTCTCC------------------------CCTCAAAACAATAAACACGCCTCCGATGCACGAATTGACTCTC-AAAATGT-GAACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   604117 153 -  1162296 AAGGTAGTTGCGTAAAACAATGTGACTAAAGCTGATGAGCAAATACAAATGACCAT-CCCCTTC------TCCCCCCAATTCCCTTCA--CCACTTCTTCGACCAT------------------TCCCGAAACAATAAACACGCCTCCGATGCACGAAGTGACTCTC-AAAATGT-GAACTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38481 158 +   118955 TAGGTAGTTGCGTAAAACAATGTGACCAAAGCTGATGAGCAAACACAAATGACCat-cttctc-------tctcct--------------tcACTTCTTCGACCATTTCAcccccccAACCCCTTCCCGAAACAATAAACACGCCTCCGATGCACGAATCGACTCTC-AAAATAT-GAACTG
i caeSp111.Scaffold412  I 6 I 2
s caePb3.Scfld02_62       113279 154 +   783054 GAGGTAGTTGCGTAAAACAATGTGACTAAAGCTGATGAGCAAATACAAATGACCAA-CTTCTT-------TTCCCTCGTT----TGCA--CCACTTCTTCGACCATT-------------CCCATCCCGGAATAATAAACACGCCTCCGACGCACGAATTGACTCTTGAAAGTAT-GAACTG
i caePb3.Scfld02_62     I 27 I 1541
s caeJap4.Scaffold17495   103865 143 +   161274 AAGGTAGTTGCGTAAAACAATGTGACCAAAGCTGATGAGCAA--ACAAATGACCGA---TATT-------TCTTCACACT---ATACA--TCACATCTCTGACCGT------------------TTGCGAAACAATAAACACACCTCCTATGCACGAATTGTTTCTC-AAGTT---GAACTG
i caeJap4.Scaffold17495 I 3449 I 9927

a score=18109.000000
s ce10.chrX               858078 111 + 17718866 ----TCGTTGCCTCCT-----TCACTCCTCCCCAATTG--CG---CCTCTTTAGC-GGTTCGTTTGTCGAGAAGGGACGTGTTGATGGGAAAAACACGAACTTTTTTCAAGTACTGATAACACTAT----
s cb4.chrX              21277164 106 - 21540570 ----TGGATGACTCCCGAAAGCAGCTACCGTCAAATCATTCG---CCTC-TTAGCGGGTTCATTGATT--TGAGGGATGAG---------AAAACacgaac-tttttcaaatagtgATAACATTGT----
i cb4.chrX              C 0 I 858
s caeRem4.Crem_Contig24   604270 113 -  1162296 ----TGGATG-CTCCCGATGGAAGCTACCGTCAAATCGTTCG---CCTC-TTAGC-GCTTCGTTTATT--GAGGGAATGTGTTGATGAGAAAAACACGAGC-TTTTTCAAGTACTGATAACAttaa----
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     38641 111 +   118955 TGGATGGATG-CTC------------ATCATCGAATCGGTCGACTCCTC-TTAGC-GCTTAGGTTATC---GGGGGATGTgttgataagaaaaacacGAGC-TTTTTCAAGTACCGCTAACATGAATGAT
i caeSp111.Scaffold412  I 2 C 0
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I

a score=492.000000
s ce10.chrX               858189 64 + 17718866 GACCGGCTACCGATGTGCTCATCATAGAGCACATGATGTGATGGGGAAAAACAGGGAAACACGA--
s caeRem4.Crem_Contig24   604384 58 -  1162296 ggtcaactacaaaggTACTTCGGGGTGAACA------ATTGTGTGAAAAGATCAGAGGACACAG--
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     38752 55 +   118955 GGTCACCTACCAAAGTACTTTTGTGAGAA-----------ATGGGTGACAACTAGGGTAAACACGA
i caeSp111.Scaffold412  C 0 I 774
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I

a score=-3367.000000
s ce10.chrX               858253 320 + 17718866 ATAAAAATAGAGTTGCTTTGCATTGGCATATTTGTGACTTGTTTTCCTTCATAATGGTCTGCCATATAGAGGTACCGAAAAAATGAATGCCATGACAGCTGTTTAAAACTCTGTACAAGGGCTGTGCGGCAACCGGCAACCGATAGTTGCGGGATGCC----AAACATTTTAACGTTCGGCAACTCCGGCAATTGCCTCGCACCCCTGCTTTGCACCGCCAATTGTGCGATTCTTTCTTGAGCGTACCTCAAGTTGTTTCAGGCCTGAAAACCGGAATGACTGCAAATCTGGAATAAAACTCCTGGTGTGCAATTTTAAGTTAA
s caeRem4.Crem_Contig24   604442 179 -  1162296 AA--------------------------------------GTTTTTCTTCCGAATAATC----------------CCAATAAAGGAAT--------ATTTGTTTA-------------GTGATGTG---------------GATAGT---GGGATTTCTTTTGGTCCTGCTAGAATTCTATGACTTCAGGTAT-------------------------CCAAT------------------------ATCAAGGCATT---GttcataaaagaaaaaaacatacaaaactaaattgaaacatttattATTCAGATTGAGGCCAA
i caeRem4.Crem_Contig24 C 0 I 13
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I
e caeSp111.Scaffold412     38807 774 +   118955 I

a score=0.000000
s ce10.chrX               858573 24 + 17718866 CGGACAGAAACCATACAATTCGAG
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I
e caeSp111.Scaffold412     38807 774 +   118955 I
e caeRem4.Crem_Contig24   604621 13 -  1162296 I

a score=-1880.000000
s ce10.chrX               858597 447 + 17718866 AAACTCTGTTTTGTGCTTAGACGATTCTCTTGCGGGATGAGTCTAATTATATTTATTGATTTTTTTCTTCTCAATAAATGAACATATAACTAGCCAGAATTTTCAATTTTCGCCTAGTTGTCACTAAAAGCCTAGA--AGATGGTTGGTTATCCTATTTTTTTTCTGAAATCTGTGACATCACACTACAATCTGCAATAATTTTCTAGGAAGTTAATAAGTTATATTGCTTAAAGATTGGCGTGATCGTAATGACTGATAATTTTTTTGGAAAAACTTTTTTTTTTGAAAAACAAATTTTTGATGATTACATGTATAAAACTCTACAAAATGTAAAGCTTGAAA-TATTCCAAAAAAAAAAATAATAGAGCCAGCT--AATTTTTGAGGGTAAATTCCAAAGAACTGAAATTGAATTTCT--AAAAAAGTAGTATTTTT--TTAAATTTCCATTCG
s caeRem4.Crem_Contig24   604634 344 -  1162296 AAACTCTCTTTTTAGCCCAAACAggcttcc--------------------attttttgaagtcgagCGCCTCCTTACATAATTTGAT---------GAATTC-------------------CACTGAAATCATTGATTGAAAAGTAGATAGTGGTGTCCCATACCTAAAATC--------------------------------CCaaaaagataacaaaaaatgtcaaatcaCGA-----AAGATCGTT--------TAATGTTTACGGAATATGTCTTcttaattgaaaaca--ttttcatagcTTTCAA--CTCAAGTTTTGCTAAAAGTTTTGCTAGAAGGTGCACCTCAACACGGAACA------CCAGtttgaatttcggat------tttcagaaaa---aaaatcatttgcttcaataaactaaaatttttgatcatATTTGTGTTTG
i caeRem4.Crem_Contig24 I 13 I 37
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I
e caeSp111.Scaffold412     38807 774 +   118955 I

a score=0.000000
s ce10.chrX               859044 30 + 17718866 TCTGAAAAGGTGAAGTGAAGTCGAGTTGtg
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I
e caeSp111.Scaffold412     38807 774 +   118955 I
e caeRem4.Crem_Contig24   604978 37 -  1162296 I

a score=496.000000
s ce10.chrX               859074 382 + 17718866 atatcccaaaataa----ctg--ttaaaaaatcaaataaaattctctaaattatttctgagttttcaattttgcacaacacacaattaaaatctggcggattagtatttaaattctagcgcagaatgattggcctagttttgacatttccgcgttttcctgaaatcggcgatttttgatttGTCAACTTTTCCA----CAAAAAAAATTATAAATGAAT--GTGAAAATTACCTTGTTTATTTTTGATAAATTGGGGAAAAATGaataatttttttaaaaactttaaatttttCA---ATGCGACCTTTTTTTAAAATGTTTCCTGTTCAATTCAA-------ATGATTTCATATAACTTCTTTTTTTAACCC-TTCCGCTCAACATTA-TTAAAC------------------------CCAAATAAAC
s caeRem4.Crem_Contig24   605015 349 -  1162296 ATTTCTTATAATAGGGCcctgatctgaaaaatggagtaa---tcttgaaatc--ttcaaaa----caacTCTAACAAGCATCCAATCaaa--------------caatgaaattttga-----------------agttttcagatttcctatttttcattaaa-----aatttt----------atttttttataatcAAAGTGAATTTTCGGGAAATTAGTACatcttatattttttgttttt---------------------tgatttttgtcaa---ttcCAACTTTCCACGGATTC--CCTTACTCTAAAGTGTTTGCATTTCAATTTAACGAGTTTGTGAATTCATGAGATTCTTCCATTCAACCCATTACTTTTTACGTTAATTAAACGTTTCCCTCTTTCCCAATTCCGAATCAAAAATGC
i caeRem4.Crem_Contig24 I 37 I 34
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21277270 858 - 21540570 I
e caeSp111.Scaffold412     38807 774 +   118955 I

a score=18668.000000
s ce10.chrX               859456 247 + 17718866 TTTTGTTTGC-------CACAAGATTGCAAGATATCTGCC-TTTGAATTTGC------CATTTTTCGCAATCTTGAATGCA-ACACAATTGTAACACAATACTCATGTAAACGCAACAGATTGCATGAATAGTGGAGACACAGACATAAGGGA--GCTTCTCCGGCTTCTTTCGCATCGATTGACGAAG---AGAGGCTCAC-----------TTGTGCT--------------CAGCTCTTTAATGTTCCCGTGTTT---TGCTGTTTGACTGGAGATTCTTTTGGGAATTAGT-------------------
s cb4.chrX              21278128 275 - 21540570 ttttATTCCA-------CAGAAGCTTGCAGCTCTTTCAAATATTGCGTGTCC---------------TAATTTTGAATGTA-GCTGAATTGTAACATAATACGTATGTCAATGTGTGAGAGCACGAGAAGGGGCGAGA---GGGTGCAAGAAACGGCTCTTCTGGCTTCTTCC-TATTGATTGAAAGTC--TGCTCTCTCACACGCTAACACACTCGGCCTGCTTCCGTTCTGTTGGCTTTCTCATGTCGTCGTGCTT---TGCTTTTTAAC-------TCTGTAAGGAGTTCTTCTTGCCGAGAGCAATTAGT
i cb4.chrX              I 858 I 71
s caeRem4.Crem_Contig24   605398 236 -  1162296 TTTTCCTCTATCTCTTCCAAAAATTTACTGCCGCCTGAAA-ATCGCGTGTC---------------------TTGAATGCC-CCACAATTGTAACACAATACTTATGTCAATGTGTGAGAGCACGTGAATAGACGAGA----CACGAGAGAGACGGCTCCTCCGGCTTCTTCC-TATCGATCGAGAGGA---GCTCTCACACGGAGCAATGCTTTTGGCA--------------CAGCACTTTGATGCCTCCGTGTTT---TGCTTTTTAAC-------TCTGTAGGGAGT-----------------------
i caeRem4.Crem_Contig24 I 34 C 0
s caeSp111.Scaffold412     39581 252 +   118955 TTTTGTTTAA------ACAACAATTTTCGGTGATTTCA---TTTAAATTTCCACCCTAAATCTTCTGCAATTTCGAATGCAGCCGCAAATGTAACACAATACTTGTGCCAATGCATGAGAGTGTGAGAAGAG--GAGA----GGTGGAAAAGCTTGCT-----AGCTTCGTCC-TATTGAttgaggagaaaagaaggctCACACTGCCATGCTTTC-TCA--------------TAGCTCTTAAATGAACTCGTGTTTTTCTGCTGTTTAAC-------TCTGGAGGGAATTCGT-------------------
i caeSp111.Scaffold412  I 774 C 0
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I

a score=-9742.000000
s ce10.chrX               859703 221 + 17718866 TTTTCTGCAA--AGCAGACCGAAACGGTGGAGGAACGGTGAGAGTTTGTTTTAAGTCTAGGAAAAAGTATGAGTTTATAATTTTTTTTTAATGA-AGTTAAAAAAAAACTATATTGTAAAAGGAATTTTACTGAC----AGCCCGTTAAGAAAAAATACAAAAAATTAAAACGCTTATTTTCTGATGTAAAAATAG--AAAAAACAATTTTCCCATTAATCCTTATTCCT
s caeRem4.Crem_Contig24   605634 150 -  1162296 TCTTCTGCAGATAAACGATAAAAAACgcag---------------------------------------tgagt------tttatttttaa--a-agatcGCATAAAGGAAGTACATA-----ATTCATGTTGGTATAGAAATCGTTGAGa------acgaaaatgtgaaaaaattgaaattttatatgaaaattatcaaaatgcAGCC---------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     39833 134 +   118955 TTGGGTGGAACCACAAGACACAAAAGTTAG---------------------------------------Ttgtttcctccttttttcttaa--atagCTATAACTAGAGTGGTCtatac----atttatatt-------atattatt----------------atttatagta--tgtatttttttaaaccgaTTAT-AAAATAC-------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       113433 1541 +   783054 I
e caeJap4.Scaffold17495   104008 9927 +   161274 I
e cb4.chrX              21278403  71 - 21540570 I

a score=-3568.000000
s ce10.chrX               859924 20 + 17718866 AAATTCAGG---TAAC---GCTT---TCT
s caeRem4.Crem_Contig24   605784 24 -  1162296 --ATTCAGAAATTATC---GCCAACGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     39967 22 +   118955 -----CAGGTACGAGCT--GCTTGGATCT
i caeSp111.Scaffold412  C 0 I 2
s caeJap4.Scaffold17495   113935 23 +   161274 aatttcaaaaaatagtttaaccT------
i caeJap4.Scaffold17495 I 9927 C 0
e caePb3.Scfld02_62       113433 1541 +   783054 I
e cb4.chrX              21278403 71 - 21540570 I

a score=-1189.000000
s ce10.chrX               859944 2 + 17718866 -AC
s caeRem4.Crem_Contig24   605808 1 -  1162296 --C
i caeRem4.Crem_Contig24 C 0 I 1
s caeJap4.Scaffold17495   113958 2 +   161274 AA-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       113433 1541 +   783054 I
e cb4.chrX              21278403 71 - 21540570 I
e caeSp111.Scaffold412     39989 2 +   118955 I

a score=57356.000000
s ce10.chrX               859946 66 + 17718866 ATGATAAGCGTCACCGTCGCTGCTCAAGGGAAGCCGAAACGATTATTTGGAGGAAATTTCAGAGTA
s cb4.chrX              21278474 66 - 21540570 ATGATCAGTGTCACCGTTGCTGCTCAAGGGAAACCAAAACGATTGTTTGGTAACAACTTCAGGGTA
i cb4.chrX              I 71 I 42
s caeRem4.Crem_Contig24   605810 66 -  1162296 ATGATCAGTGTTACCGTAGCAGCCCAGGGTAAACCAAAACGGCTCTTTGgtggaaatttcagagta
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     39991 66 +   118955 ATGATTAGTGTTACAGTAGCAGCCCAAGGAAAACCTAAAAGACTATTCGGTGGAAATTTTCGGGTA
i caeSp111.Scaffold412  I 2 C 0
s caePb3.Scfld02_62       114974 66 +   783054 ATGATTAGTGTCACAGTAGCTGCTCAAGGGAAACCAAAACGGCTTTTCGGGGGGAACTTCAGGGTg
i caePb3.Scfld02_62     I 1541 C 0
s caeJap4.Scaffold17495   113960 66 +   161274 ATGATAAGTGTCACTGTAGCTGCACAGGAGAAATCAAAAAGGTTGTTCGGAGGAAAATTGAAAGTa
i caeJap4.Scaffold17495 C 0 C 0

a score=1386.000000
s ce10.chrX               860012 2 + 17718866 AG
s caeRem4.Crem_Contig24   605876 2 -  1162296 aG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40057 2 +   118955 AA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115040 2 +   783054 ag
i caePb3.Scfld02_62     C 0 I 36
s caeJap4.Scaffold17495   114026 2 +   161274 ag
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21278540 42 - 21540570 I

a score=-107.000000
s ce10.chrX               860014 6 + 17718866 TCATTC
s caeSp111.Scaffold412     40059 6 +   118955 TAGTtc
i caeSp111.Scaffold412  C 0 I 32
s caeJap4.Scaffold17495   114028 6 +   161274 aaatat
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       115042 36 +   783054 I
e cb4.chrX              21278540 42 - 21540570 I
e caeRem4.Crem_Contig24   605878 0 -  1162296 C

a score=497.000000
s ce10.chrX               860020 38 + 17718866 TAAACAGTGAAAATATGCAAATTATT--TGAATTTTTCAA
s caeJap4.Scaffold17495   114034 39 +   161274 ttaattttgggaa-atgtaTATAATTCATGGtttttttAA
i caeJap4.Scaffold17495 C 0 I 433
e caePb3.Scfld02_62       115042 36 +   783054 I
e cb4.chrX              21278540 42 - 21540570 I
e caeSp111.Scaffold412     40065 32 +   118955 I
e caeRem4.Crem_Contig24   605878  0 -  1162296 C

a score=0.000000
s ce10.chrX               860058 88 + 17718866 ATCAGAGATTTATATTATAACATTCCAAGATTTATGACACAAACATCCATAATCGTAAAACACTCGAAAAATTGAAATTTGAGTTTTA
e caePb3.Scfld02_62       115042 36 +   783054 I
e caeJap4.Scaffold17495   114073 433 +   161274 I
e cb4.chrX              21278540 42 - 21540570 I
e caeSp111.Scaffold412     40065 32 +   118955 I
e caeRem4.Crem_Contig24   605878  0 -  1162296 C

a score=-1653.000000
s ce10.chrX               860146 113 + 17718866 AATACCATATTTTGATAAACGGTCAAGATAAGGGCGAAGCAAGCAACATTAAAAAAAAACAGGCTCCGCTTAAGATTTCGGATTTTCAATTAATTCCCACAGACTAGTCAA--AT
s caeRem4.Crem_Contig24   605878  36 -  1162296 AATACc-------------------------------------------tagaagaaaataa------------------------------------aaagagtaGTTGATAAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       115042  36 +   783054 I
e caeJap4.Scaffold17495   114073 433 +   161274 I
e cb4.chrX              21278540  42 - 21540570 I
e caeSp111.Scaffold412     40065  32 +   118955 I

a score=450.000000
s ce10.chrX               860259 2 + 17718866 TT
s cb4.chrX              21278582 2 - 21540570 TT
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig24   605914 2 -  1162296 AT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       115078 2 +   783054 TT
i caePb3.Scfld02_62     I 36 C 0
e caeJap4.Scaffold17495   114073 433 +   161274 I
e caeSp111.Scaffold412     40065 32 +   118955 I

a score=38189.000000
s ce10.chrX               860261 80 + 17718866 TCAGGCATACGGCAGCGGTCGCCTTTCAATATGTGAACTAGAAAAAGACCCAAACGCCTTGAAAAGCGATGAAAAG---TAAG----
s cb4.chrX              21278584 80 - 21540570 TCAGGCATACGGAAGCGGGCGACTTTCAATTTGCGAACTTGAAAAAGACCCCAGTAGCTTAAAAGCTAACGAATCG---TAAG----
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig24   605916 80 -  1162296 TTAGGCATACGGAAGTGGACGGTTATCAATATGTGAGCTGGAAAAAGATCCAACTGCTTTGAAAACTAATGAAACG---TGAG----
i caeRem4.Crem_Contig24 C 0 I 52
s caeSp111.Scaffold412     40097 84 +   118955 TCAGGCTTATGGAAGTGGTCGTTTATCCATATGTGAGCTCGAAAAAGATCCAAATgcattgaaatcaaatgaaaag---tgagtgaa
i caeSp111.Scaffold412  I 32 C 0
s caePb3.Scfld02_62       115080 87 +   783054 CCAGGCTTATGGAAGTGGTCGTCTCTCGATATGTGAACTTGAAAAGAATCCGAATTCTCTCAAAACTAATGAAAAGTGATGAATGAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   114073 433 +   161274 I

a score=-5279.000000
s ce10.chrX               860341 58 + 17718866 CTCTCCTTTATCCTTCTGTTCCAATAATAATTATCACATTCCAGAAAATTCTCATCTT------
s cb4.chrX              21278680 44 - 21540570 --------CAGtcatc------aatgttt------ttttttcagaaatctttctACAACACGTT
i cb4.chrX              I 16 C 0
s caeSp111.Scaffold412     40181 57 +   118955 aaatataataaacaTTGGTTTGAATCAtc-ctatcttttttcaggggTTTCAACACAA------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115167 49 +   783054 TTATATGCTATGTGTT------AACATTc-cta--agttttcagaaaactgaacaCCA------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   114073 433 +   161274 I
e caeRem4.Crem_Contig24   605996 52 -  1162296 I

a score=35737.000000
s ce10.chrX               860399 185 + 17718866 CAACGGTCAAGGTTTTCTTATTTGTGAACAAACTTTTCGAGCTGCTCACAACAATTCTTCATTATTGCATGCCGTACTTGTTCACACAGAAACAGCAGTGGTATCGTCCAGCTGTGCAAAAAGAG------GAAATAATTGTAGAGCCGATTGCTCAGGTATTTTTTTAATTAAAATATCAATA-CCAATAA
s cb4.chrX              21278724 169 - 21540570 ------TCAAGCTTTATCTCTTCGTCAACaagtttttcgaacttctcGCAACTATAATACACTATTGTCTTCCGTATTTCTTCAACCAAAAGAAAACATGGTAccatcaaa------acaaaaaagagatggTGGCTGTTATGCAACCCGTGGTTCAGGT----------TTGAAACGTTAAAA-CTAGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   606048 174 -  1162296 CGACCGTCAAGATATGTATGTTTGTAAATAAGCTCTTCGAATTGCTGACAACTTTCATTCATTACTGTCTCCCTTACTTGTTCAATCAGAAGCAGACATGGTATTGTCCCACAACTCGCAAAGAA------GTTGTTGTACCAGATCCAGTAATGCAGG------------TAAGACATAAAAATCTAATAT
i caeRem4.Crem_Contig24 I 52 C 0
s caeSp111.Scaffold412     40238 176 +   118955 CAACTGTGAAGATATGCCGTTTTGTTAATAAGCTTATCGAATTCATAAGTACTCTCATTCATTATTGTTTACCATATTTTTTCACACAGAAGCAGACATGGTATTGTCAAACGGCTCGTAAAGAG------CCAGTTATTTTGGAACCAGGCACTCAGgt-------tattttccgttttccag-ct--att
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115216 170 +   783054 CAACTTTCAAAGTTTGCCTTTTTGTGAACAAGTTGTTCGAATTGTTGAcaacatttattcatttctgttTGCCGTATTTTTTCACCCAAAAACAGCAGTGGTA---CCCAACGGAACGGAAGGAA------CCTTTAGTTTTGGATTCAACGTTTGAGGT---------CTGAAAGCTTACCAA-C---ATT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   114073 433 +   161274 I

a score=40418.000000
s ce10.chrX               860584 114 + 17718866 TTAAAA---------CTTT-------TCATA---GGATTTTGAAAGCCACATTCTGGCAGATGTATTCAAGTATTTGGATATTGATGACCTGTTGAATTGTAAATTGGTATGCTGGAAATGGAACGCTACAAT
s cb4.chrX              21278893 123 - 21540570 TGAGAAGTAATTTTTTCAC-------TTATA---GGATTTTGCATGCCCCATACTTCTCAACGTGTTTAGACATTTGGAAGTTGAGGATTTGTTGACTTGCAAACTGGTATGTTGGAAATGGAACACGACGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   606222 133 -  1162296 ctaaaaaccttatttttacaaattttttatagcCGGATCTGGACTGTCCAGCTCTTGTAgaagttttcaagttcttGGATATCGATGATATGCTGAATTGTAAACTGGTGTGTTGGAAGTGGAATACGGCAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40414 123 +   118955 ttttttacagtttcgAGAC-------ATTTA---GAAATTTGACTCCCCAATTCTATTCGAAATATTCAAGAATTTGGAAGTCGACGACTTATCAAATTGTAAACTTGTTTGTTGGAAATGGAATACAACAAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115386 123 +   783054 TCAAAAGGAATTAAATTAC-------TTTCA---GGAAATCGAATCTcctgttttgatggaaatATTCAAGAGACTAGATATTGATGATCTGTTGAGTTGCAAGCTAGTTTGTTGGAAATGGAGCGCTTTGAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   114506 114 +   161274 tcaata---------tttt-------tttca---ggaatttgAGAAAAACACATTGCTGGTTATTTTTAATAACCTGGATTcaaaggaaaaattaaaatgcaaGCTAGTTTGCAAAAAGTGGAACAATATCAT
i caeJap4.Scaffold17495 I 433 I 19

a score=5999.000000
s ce10.chrX               860698 25 + 17718866 TGGAGAAAATGCGTCCGAACTTGCT
s cb4.chrX              21279016 25 - 21540570 ATGTGAAAATTATTCAGAACTTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   606355 25 -  1162296 CAGTGAGAATGCATGTGAGCTTGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40537 25 +   118955 TGGTGAAAATTCGGCTGATCTAGCT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115509 25 +   783054 TGGAGACAACGCTGCTAGTCTCGCG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   114620 19 +   161274 I

a score=31052.000000
s ce10.chrX               860723 220 + 17718866 AGAACCAGAACTGACCAGGTT--------------TTTTTAAAGTTTATAAGCTTA--AACATTATACATTTTCC------AGATAAGAATTTTGTTCGATGAAGGCGAAGTTGTGGTATATCCAATTGACGAAAAGAGATGTCCAGTCAGGCATCCGCTTCCACCATTACAGGTAATTCAATTGTCTGTACGTATTG------------------GATTCAGAAAACTTTCAAGCATTGCGCAAAAATTTCATAATTTT
s cb4.chrX              21279041 226 - 21540570 ACTACAAAAACTGACCAGGTACCATAA----A--GTGAAAGTAA-------CTGCA--ACCAAT------TTTTA----TTAGATTCGAGTATTATTTGATGAAGGTGAAGTGGTTCTGTACCCAATCGACGAGAAAAAATGTCCAATACGGCATCCATTACCTCCACTACAAGTAG---GCTTGACAA-ATCCAACATTgtattactctcgtccgaaatcaatgcacgtt-----gcggccgaaaatttactcaaaatc
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   606380 209 -  1162296 ACCACCAAGACGGATCAGGTACCccaatttta--attaaaatggGCTATTCAtgca--attaat------ttttgaaattcagatcCGAATTCTATTCGATGAAGGTGAAGTCGTCTTGTACCCAATAGACGAGAAAAGGTGCCCAATTCGTCACCCACTACCACCACTGCAGGTA------TTTATTA-ATCCATTCTTACat------------aaatc----------------------aaaagtttcttaatttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40562 170 +   118955 AGAACTAAGACTGATCAGGTA----------A--ATTTTCATGGCGTTTGGCGTTA--AATCATCGAAAATATT-------AgattcgaattctttttgatgagGGGGAAGTTGTGATTTACCcaattgatgagaaaaagtgtcCGATTCGCCATCCCTTGCCTCCCTTACAGGta------ttttctg-tctttttt--------------------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115534 174 +   783054 CGAACAAGAACTGACCAGGTA----------A--CTTCAATAAACTTCTCACTTCg--atcaataaaaagttttg---cacAGATTCGAATACTGTTCGACGAAGGAGAGGTTGTACTTTACCccattgatgagaaaaaatgtccTGTGAGACATCCTCTGCCACCTCTTCAGGTA------TTGTTTG-ATatgttt--------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   114639 190 +   161274 aaaataaaaactgatcaggta----------atttttttccaaatcgtTTTATTCAACATTCTTCAAAACTTATC------AGATTCGAATATTGTTTGATGAAGGAAAAGTCCTCATTTACCCTATCGATGAAAGAAAGAGTCCAGTTCGTCACTCACTTCCACCTTTAGAGGTA------TGTACAT-AAGTATAC--------CTTACACCTAATATC---------------------------------------
i caeJap4.Scaffold17495 I 19 C 0

a score=330.000000
s ce10.chrX               860943 3 + 17718866 ATC
s cb4.chrX              21279269 3 - 21540570 atc
i cb4.chrX              I 2 I 13
s caeSp111.Scaffold412     40732 1 +   118955 --c
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115708 1 +   783054 --a
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17495   114829 3 +   161274 ATC
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   606589 0 -  1162296 C

a score=-829.000000
s ce10.chrX               860946 25 + 17718866 CCAAAAATCCTAAAATTTGAAAGTT
s cb4.chrX              21279285 18 - 21540570 ccaaaaa----acaaattga---tg
i cb4.chrX              I 13 C 0
s caeJap4.Scaffold17495   114832 10 +   161274 ---------------TTTGATAATT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       115709  2 +   783054 I
e caeSp111.Scaffold412     40733  0 +   118955 C
e caeRem4.Crem_Contig24   606589  0 -  1162296 C

a score=-12133.000000
s ce10.chrX               860971  92 + 17718866 GAAACATATTGTAATAACAGG------------------------------------------TTGTTTTGTAAACACGAAATGAATAGC--------------------------------------TGTACTCATCAGAAAAAGTTACCCGTCTGCTAAAA----------------------------------------------------AAGTCTCAC
s cb4.chrX              21279303 224 - 21540570 catgcgcctttaaataccgtaactcggacgttttttattttgggccctatttggctgttttttttctattttacaagagaaataaattaaagatttataagaattacacaaaattagacagaaacaagcgaaaaaataagagaaatttgagaaaattcgataaatgttgaggtactgtattaaaggcgcgtgcaataatttgaaaaatacagtaaggttctcac
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     40733  27 +   118955 --------------------------------------------------------------------------------------------------------------------------------tgaaactattATAGAAAT---------------------------------------------------------------------GGTTTTCTC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       115709   2 +   783054 I
e caeJap4.Scaffold17495   114842   0 +   161274 C
e caeRem4.Crem_Contig24   606589   0 -  1162296 C

a score=-4251.000000
s ce10.chrX               861063 19 + 17718866 -----------------------------TATTTC-----------------------------------AAATTTGAATCCG
s cb4.chrX              21279527 78 - 21540570 tgtgggagctaagctccgcccaccgttcttttttcggccgcaacgtgcattgatttcggacaagagtaataacTCTTG-----
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_62       115711 13 +   783054 -----------------------------tgtttc-----------------------------------aaatctt------
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17495   114842  0 +   161274 C
e caeSp111.Scaffold412     40760  0 +   118955 C
e caeRem4.Crem_Contig24   606589  0 -  1162296 C

a score=-598.000000
s ce10.chrX               861082 3 + 17718866 TAT
s cb4.chrX              21279606 3 - 21540570 GTT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   606589 3 -  1162296 taa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40760 1 +   118955 --T
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115724 1 +   783054 --t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   114842 0 +   161274 C

a score=207122.000000
s ce10.chrX               861085 476 + 17718866  
s cb4.chrX              21279609 458 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   606592 462 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40761 466 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       115725 552 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   114842 464 +   161274  
i caeJap4.Scaffold17495 C 0 I 39

a score=-3704.000000
s ce10.chrX               861561 14 + 17718866 C---TTTGATGTTTCTG
s cb4.chrX              21280067 17 - 21540570 TAAATCTCTAACATGTG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   607054 14 -  1162296 T---TTCCTTCCTTTTG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       116277  1 +   783054 G----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306 39 +   161274 I
e caeSp111.Scaffold412     41227  0 +   118955 C

a score=-14470.000000
s ce10.chrX               861575 125 + 17718866 CAAAAGAAAAATTTGACCAAATTAGATGTTCACAGTGATCACTTTTATCATATTACCTAAACGACCATAACAATCGAAATGACAGAAATGACAGAAGATGTCAATTTGATTTTTCGCATTGAAAA-------
s caeRem4.Crem_Contig24   607068  32 -  1162296 ------------TT-------CTCGATGT---------------ACATCTCAGT------------------------------------------------------------------GTACATCGAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41227  34 +   118955 --------------------------------------------TCATCTTATTAC-----------------------------------------------gtctgattttgaaaagtgaaca-------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116278  26 +   783054 ----------------------CAGAAGTTA------------CTCATTTTATTA-----------------------------------------------------------------GTACA-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306  39 +   161274 I
e cb4.chrX              21280084   2 - 21540570 I

a score=-4992.000000
s ce10.chrX               861700 103 + 17718866 TACCTTGTTCATAGCTTGCAATAAATTTAACGCGTTGACCACATCATCACCTTTGAAAAATAAACTTGAGGACAAAGTCTCATAAATAACTAAAATTGTTTTT
s caeSp111.Scaffold412     41261  52 +   118955 GATTTT--------CTTGC-------TTA----AATGACTTGTTAATCGTTTC--------------------------------ATACtcgaaaacgttttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116304  31 +   783054 --------------------------TTA----GGTGATC------TCGTTTC--------------------------------TAGTCCCAA----TTTTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306  39 +   161274 I
e cb4.chrX              21280084   2 - 21540570 I
e caeRem4.Crem_Contig24   607100   0 -  1162296 C

a score=-383.000000
s ce10.chrX               861803 9 + 17718866 TGGTAATGC
s caePb3.Scfld02_62       116335 5 +   783054 CTGTA----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306 39 +   161274 I
e cb4.chrX              21280084 2 - 21540570 I
e caeSp111.Scaffold412     41313 0 +   118955 C
e caeRem4.Crem_Contig24   607100 0 -  1162296 C

a score=-8791.000000
s ce10.chrX               861812 149 + 17718866 GGTATTTAAAACAATTATTGTGCTAGCCAACAACTTGTAATGTCCTGATAAAGAAAATTAGCGCACCGATCAAACTTTGTAATGCACTGAAAACTTTGACCCTGACCAGATTTTTCCACAAAATTCAAT-----ATACCAGATTTTTTACGAGA
s caeRem4.Crem_Contig24   607100  52 -  1162296 -----------------------------------------gtcattaaaaatga----------------------------------------tttagCATGAC---------------AATTCAACGAGTGACAGCTGatctttc------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       116340  32 +   783054 -------------------------------------TAATGTCATT----------------------------------------------------------------------------TTC--------ACAGCGTTTATTTT-CAAGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306  39 +   161274 I
e cb4.chrX              21280084   2 - 21540570 I
e caeSp111.Scaffold412     41313   0 +   118955 C

a score=-4219.000000
s ce10.chrX               861961 20 + 17718866 TATCAAAATTTATAACTTTG-
s cb4.chrX              21280086 21 - 21540570 TATCATATCATCCAATTCTTT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   607152  9 -  1162296 ---------at---gtttttc
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       116372  3 +   783054 ----------------TCT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115306 39 +   161274 I
e caeSp111.Scaffold412     41313  0 +   118955 C

a score=944.000000
s ce10.chrX               861981 4 + 17718866 CAGC
s cb4.chrX              21280107 4 - 21540570 TAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   607161 4 -  1162296 cagA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41313 4 +   118955 cagc
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       116375 0 +   783054 C
e caeJap4.Scaffold17495   115306 39 +   161274 I

a score=103363.000000
s ce10.chrX               861985 158 + 17718866 GCAATTCTAAATGGATCT-CCAGTGGAAACCATTGATCTAGGCACATGCTTCCTATCAAGTGAAGCTGTATCCCAAATTGTGCAAAGCTGGGAGCAAACTTCAACCAGCGACTTGACCATCATGTTGAGTCATTGTTATCCGGTCAACAAGTGAGTAA---A
s cb4.chrX              21280111 161 - 21540570 GCAATTCTGCAAGGCTCG-CCGGTGGAGACAATCGACTTGGGTACTTGTTTCGTGTCAAGTGAGGTTGTGTCATCACTTGTCAAAAGCTGGGAGCAAAACTCAAGGAGCGATTTAACCATCATGTTGAGCCACTGTTACCCGGTCAACAAGTGAGTAGTGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   607165 158 -  1162296 GCGATTCTCCGCGGATCT-CCAGTGGAAACCATTGACTTGGGGACTTGTTTCGTTTCAAGTGAGGTTGTGTCATCTATTGTTAAAAGCTGGGAGCAAACCTCGACAAGTGATTTGACCATTATGTTGAGTCACTGTTATCCGGTCAACAAGTGAGTAA---A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41317 158 +   118955 TCAATACTGAAAGGTTCT-CCGGTAGAAACCATCGATTTGGGTACTTGTCTCCTATCAAGTGAGGTAATAGCATCTATTGTGAAAAGTTGGGAACAAAACTCAACAAGTGATTTGACCATCATGTTGAGTCATTGTTATCCTGTTAACAAGTGAGTGA---A
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116375 155 +   783054 ---ATCTTGAACGGGTCT-CCTGTGGAAACAGTTGACTTGGGTACGTGTAATGTGTCAAGTCAAGCTGTTGCAAACATTGTTAAAAGTTGGAAGCAAACTTCAACAAGTGATTTGACTATTATGCTGAGTTATTGTTATCCAGTGAACAAGTGAGTGg---a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   115345 159 +   161274 GCGATTATCATCGGGGCTACCAATCGAGAATATCAGTTTACGAAGCTGTGTTTTATCCAATGAGGCAATTGTTGCGATTACAAAAAGCTGGAATGATCATGCTACAAGTGATATCACGATCATTTTAGACAATTGCCGATCAGTGAACAAGTATTTAA---A
i caeJap4.Scaffold17495 I 39 T 99786

a score=37732.000000
s ce10.chrX               862143 291 + 17718866 CA---CTCCATTTTTTTCGGTTTTAATTGTTCTAATGAGTACTTTTCACTTTGCAAGAAGTGTCTTTTGTTTCAATTTTCTTTGAGACTTCCTTGTTTTACGCGGTTTGAAAAAGTTTAAAAAAATACCACCGAAATAATTCATTGCAACAAAATCACACAATTTTTCAAGATCACAGTTATATTTTTTGCAGACCGGATGTGATCCGACTTCTACAGGATCGTAATATCACACTGAAGAAAAATCAACAATTACATTCCAAGAACCATATGCTGACACTTGTCTGTTAATGAA
s cb4.chrX              21280272 150 - 21540570 GGCTTCCCACTTTTCG------------------------------------------------------------TTTATTTCACA------------TCTCAATTT-------ACTACAA-----------------------------------------------------------------TTTCAGACCAGATGTAATTCGTCAATTGCAAGAAAgtaatatcattttgaagaaaaatcgacagctacattccaaaaatcatatgCTAACTCTTGTCTGTTAATAAA
i cb4.chrX              C 0 I 147
s caeRem4.Crem_Contig24   607323 176 -  1162296 CATTTCCTTATCTttgcaagtt-----------------------------------------------------ttttgtttgaaa------------acgtAAACT-------Tataaaactaaac----aaaaaagttta------------------------------------------ttttacaGACCAGAAGTCATTCGGCTTCTGCAAGAGAGTAATATCACATTGAAGAAGAATCAGCAACTACATTCCAAGAATCATATGTTGACACTTGTATGTTAATAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41475 170 +   118955 TA---tctgttttatt------------------------------------------------------------ttaatttgtGA------------AAACGTTTC-------TCAAGAATTTTATTATtgcaaaaattta------------------------------------------ttttacaGACCAGAAGTTATCCGACTACTACAAGATTGGAATATcactttgaagaaaaatcagcaattgcattccaaaaatcatatGTTGACGCTTGTTTGTTAATAAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116530 161 +   783054 ga---cacaatttttt------------------------------------------------------------tttccgggaga------------aaaa-------------ctagaaatccATTTCAACTGTGAT---------------------------------------------TTTTGCAGACCGGAAGTCTTACGGATTCTGCAAGATTGTAATatcacattgaaaaagaatcaacAGCTACATTCCAATAACCATATGCTGACACTTGCCTGTTAatgta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115504 99786 +   161274 T

a score=-1276.000000
s ce10.chrX               862434 9 + 17718866 GATTATAAT
s caeRem4.Crem_Contig24   607499 3 -  1162296 ------AAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41645 1 +   118955 G--------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116691 9 +   783054 aaataaaat
i caePb3.Scfld02_62     C 0 I 99
e caeJap4.Scaffold17495   115504 99786 +   161274 T
e cb4.chrX              21280422 147 - 21540570 I

a score=-2273.000000
s ce10.chrX               862443 38 + 17718866 AAAGAATCAACACGTTATTACATTGAGGGATATGTTGT
s caeRem4.Crem_Contig24   607502 16 -  1162296 -----GTGTGCACGTTATTTA-----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41646 21 +   118955 ---TTATATCAATGTTAATTG--------------TGT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       116700 99 +   783054 I
e caeJap4.Scaffold17495   115504 99786 +   161274 T
e cb4.chrX              21280422 147 - 21540570 I

a score=87345.000000
s ce10.chrX               862481 515 + 17718866  
s caeRem4.Crem_Contig24   607518 439 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41667 454 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    70337 471 -   161274  
i caeJap4.Scaffold17495 n 99786 I 370
e caePb3.Scfld02_62       116700  99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I

a score=-527.000000
s ce10.chrX               862996 27 + 17718866 AATGTTATATGATGATAAATCTCAGTT
s caeSp111.Scaffold412     42121 25 +   118955 GCTGGTTCATTAT--TGAAGACAAGAA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       116700 99 +   783054 I
e caeJap4.Scaffold17495    70808 370 -   161274 I
e cb4.chrX              21280422 147 - 21540570 I
e caeRem4.Crem_Contig24   607957  0 -  1162296 C

a score=27066.000000
s ce10.chrX               863023 124 + 17718866 AACGTAC---CTGCTAGCCATACCGGGGCCCCAACACAAAATCATCAAGTTGTACTTTCCATTTCCAACATCCACTAGGTTTCTTGTGTATCTGTAAAAAA------ATAGTAAATTTTCGTG-----------------------AAAAGACTTT
s caeRem4.Crem_Contig24   607957 123 -  1162296 ----------CTGCTAGCCATACCAGGTCCCCAGCACAAAATCATCAAGTTGTACCTTCCATTTCCAACATCCACCAGATTTCGAGTGTATCTGTACAAAATGCGTCGTAgctacattttttg-----------------------aagagaactT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     42146 152 +   118955 AAGCTACCACCTGCTTGCCATTCCAGGCCCCCAGCACAGAATCATAAGATtgtattttccatttccaataTCGACCAGATTCCTTGTGTACCTG-ACATAATATTATGatttaatattttctgttgCTTAATAAGtttgatggaaaaagaaga---
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    71178 124 -   161274 AACACAC---CTGCTTGCCATTCCTGGTCCCCAACATAGAATCATCAAGTTATATTTTCCATTTCCAACATCAACTAAGTTTCGCGTGTatct--aaaaaataatt-atcttgaattttc--------------------------aaacaatttc
i caeJap4.Scaffold17495 I 370 C 0
e caePb3.Scfld02_62       116700  99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I

a score=174.000000
s ce10.chrX               863147 3 + 17718866 TAC
s caeSp111.Scaffold412     42298 3 +   118955 caa
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    71302 3 -   161274 taC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       116700 99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I
e caeRem4.Crem_Contig24   608080 0 -  1162296 C

a score=-659.000000
s ce10.chrX               863150 251 + 17718866 CAAACTGACTTGAATTTATACTGTTCTAGTTCTATTTTCACCATCCTCTGCTAAATAATTGTTCGAAAAATGTTTTCTAATTTTATGAATTTGGTAAAAATGTTAAGATTTTCAATATTTCTTTTAACAGAACCAAACACCAATATAATACATCACGATCATTCATAATTTCCGAAGAATTCTAAAAATTACGCAGATCTTAAAAGTAGATTAGTCTGTAA----TCTCATCTTCCCCCAAAAATGCATTTCAAT
s caeSp111.Scaffold412     42301 216 +   118955 cgTATTGAATTGtacataaattt-----------ttttcaa-----------atgtaattgacaaaaagatttttcaaagtacttcaaaaattaaaaacatgtTCCAATGTTCAGTACACTTTT-----GATTCTCGC-CTGATGTTTCATCTCCAAATTGGCCATGATCTC-------ttataaaattttcg-agatctGATATCTTCATTTTGCGATAAGATCTGTTGTCTtcgccgaaaaaaaaaatat---
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       116700  99 +   783054 I
e caeJap4.Scaffold17495    71305   0 -   161274 C
e cb4.chrX              21280422 147 - 21540570 I
e caeRem4.Crem_Contig24   608080   0 -  1162296 C

a score=-1666.000000
s ce10.chrX               863401 24 + 17718866 -TTTTTCTGGAACAAACCAGCACTC
s caeSp111.Scaffold412     42517 16 +   118955 ---------gaaaaatcggaaacGT
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    71305 17 -   161274 GTTTCACAAGACGAACC--------
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       116700 99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I
e caeRem4.Crem_Contig24   608080  0 -  1162296 C

a score=41008.000000
s ce10.chrX               863425 197 + 17718866 ACTTGTTCATATCGAAAATGGCAAATCTTCGCCACTCATTTGCGTTGCTTTTGTATGAAGCCATCAGCTTCATCACTTCGTCAACATCTATCAATTTCTGTTGGAAGATTTCACGAATTTGAACAACTAACTGAACAAATGATATCATTTTT------------CTGAAAACAGG----AATGTTGTCATATTGAAT--AGtaaataaaaaaaaa
s caeRem4.Crem_Contig24   608080 213 -  1162296 ACTTgttatgatcaaaaatcgcaaatCTCCTCCATTCCCGCATATTACTATTGTACGAAGCCAACAATCTCATGACTTCATCGATATCAATCAGcttttgttcgaaaatttctcggaTTTTCACAACCAATTGCACAAAAGACaccatttctgaaacaatggTGCTGAAAAACAGTTAAACTATTACACGTTCAACT--AATATGTAAAAtcaga
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     42533 193 +   118955 ACTTATTCATATCAAATATTGCAAATCTTCTCCACTCATTGATATTACTTTTGTACGAAGCCAGCAATTTCATGACTACATCAATATCAATGAGTTTTTGCTCAAAAATTTCCCTTATTTGAACAACCAATTGGACAAACGTCACCATATTTAGcgt-------ctgaaaaaaga--agattttta-------------aatagaCAAAATTATA
i caeSp111.Scaffold412  C 0 I 509
s caeJap4.Scaffold17495    71322 193 -   161274 ---TGTTCATATCGAAAATTGCAAATCGTCTCCACTCGTTAATTTTACTTTTGTATGATTCTAAGAGTTCCATCACTTCGTCAACATTTACCAACTTCTGAGCAAAAATTTCACGAATTTTCACGACTAGCTGAACAAAGGATGAcatgtttt-----------ctgaaaactgg----GTCTTTGTACTTTCTATTTAAACAACAAGAAT----
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       116700  99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I

a score=-1874.000000
s ce10.chrX               863622 73 + 17718866 gttgaaaa-------------------taaaataaataaaCTCCTAAAGAAAATTTACTAACTGAAAAAAAGTAATGAAATAATACGAATCA
s caeRem4.Crem_Contig24   608294 72 -  1162296 gttcaaaaacttcatcatca----caccaacatcaaaaaac----aaagacaATTC------------GGAACAGTGAAATACAACAAATCA
i caeRem4.Crem_Contig24 I 1 I 402
s caeJap4.Scaffold17495    71515 65 -   161274 ---------TTTCTTAATGatgttctttaaaaaaaattacc----aaaattaACTA------------AACCTAA--ACTTAAACCGAATCA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       116700 99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I
e caeSp111.Scaffold412     42726 509 +   118955 I

a score=364.000000
s ce10.chrX               863695 4 + 17718866 TAAT
s caeJap4.Scaffold17495    71580 4 -   161274 TAAT
i caeJap4.Scaffold17495 C 0 I 1350
e caePb3.Scfld02_62       116700 99 +   783054 I
e cb4.chrX              21280422 147 - 21540570 I
e caeSp111.Scaffold412     42726 509 +   118955 I
e caeRem4.Crem_Contig24   608366 402 -  1162296 I

a score=0.000000
s ce10.chrX               863699 1262 + 17718866  
e caePb3.Scfld02_62       116700   99 +   783054 I
e caeJap4.Scaffold17495    71584 1350 -   161274 I
e cb4.chrX              21280422  147 - 21540570 I
e caeSp111.Scaffold412     42726  509 +   118955 I
e caeRem4.Crem_Contig24   608366  402 -  1162296 I

a score=321.000000
s ce10.chrX               864961 24 + 17718866 AAAAAAGGCA----AAGACCGAGGGC--AA
s caePb3.Scfld02_62       116799 30 +   783054 aaaaaaagcatttgaGGATAGAGAGTTTAg
i caePb3.Scfld02_62     I 99 C 0
e caeJap4.Scaffold17495    71584 1350 -   161274 I
e cb4.chrX              21280422 147 - 21540570 I
e caeSp111.Scaffold412     42726 509 +   118955 I
e caeRem4.Crem_Contig24   608366 402 -  1162296 I

a score=495.000000
s ce10.chrX               864985 12 + 17718866 ATAAATAACATA
s caeSp111.Scaffold412     43235 12 +   118955 ataaaaacaata
i caeSp111.Scaffold412  I 509 C 0
s caePb3.Scfld02_62       116829 10 +   783054 --agaaagaact
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    71584 1350 -   161274 I
e cb4.chrX              21280422 147 - 21540570 I
e caeRem4.Crem_Contig24   608366 402 -  1162296 I

a score=946.000000
s ce10.chrX               864997 6 + 17718866 ATAAAG
s caeRem4.Crem_Contig24   608768 6 -  1162296 ATAAAG
i caeRem4.Crem_Contig24 I 402 I 1
s caeSp111.Scaffold412     43247 6 +   118955 ttaAAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116839 6 +   783054 gaaaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    71584 1350 -   161274 I
e cb4.chrX              21280422 147 - 21540570 I

a score=-15414.000000
s ce10.chrX               865003  92 + 17718866 ------------------TTTAAAAAAAACCA-----CCATTTCAAACAA---------AATTAAT-ATATATCAACAGG---------------AAAACG--ATTTTTAAAAAAAATGCATCTATGACTTGTGCGTACTGC
s cb4.chrX              21280569 100 - 21540570 ------------------ttcacaagaaatcg-----atttttcaaaccaGAAGTAA--TTTGACA-AGATGACAACAACGGCTT----------AACACG--TGTTTTGATAGG----CATTTAGGATTTGTGGGCACTGC
i cb4.chrX              I 147 C 0
s caeRem4.Crem_Contig24   608775  99 -  1162296 ------------------TTAATAATATACCATACTTATATATTCAACAAGAATCAA--TGggcaataaataaaaagaatgaC------------AACAGGGTTGTTTT-----------ACTTATGACTTGTGTGCGTTAC
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     43253  73 +   118955 T----------AAAAGCGTTC-CAATAAATAA-----GCATATTCAACAGGACGACA--CATCAAT-ATAT--------------------------------------------------TTTATGACTTTTGCAAGCTGC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116845 123 +   783054 ttgtaaaaaaaaatagagttc------aTTCA-----ATATATTTAACAGCCCGAAAACTATTGAT-AGATTTAAAATAAGACATTAGCGGAACGAACACA--TACACCCTTTGA-----ATTTATGACTTTGGCGCACAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    71584 1350 -   161274 I

a score=87561.000000
s ce10.chrX               865095 119 + 17718866 TCCAACCGCGAAAGTTCAAATTCACCGTACTTCGCTGTAGTTCGGAGGATTTGATGAGGAATGCCACGTCACCATCACGTGATAAACAACTCGAGTTTAGTGCCATTACGTCGATTGGC
s cb4.chrX              21280669 119 - 21540570 TCCATCCACGGAAGTTCAAGTTGACGGTGGTACGTTGGAGCTCAGACGATTTGATGAGGTATGCAACGTCACCATCTCTTGACAAGCAAGTCGAGTTCAAACCAATCACGtcaatcggc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   608874 119 -  1162296 TCCAACCACGGAAGTTCAGGTTGACAGTGGTTCTTTGGAGTTCAGACGATTTGATGAGGAATGCCACGTCGCCGTCTCTTGACAAACAGCTTGAGTTCAGTGCTATCACATcgattggc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43326 119 +   118955 TCCATCCCCGGAAGTTCAGATTAACCGTCGATCTTTGTAATTCGGAAGATTTTATAAGAAAAGCCACGTCACCATCTCTCGACAAACAGCTTGAGTTCAATGCCATCACATCCATTGGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       116968 119 +   783054 ACCATCcacggaaattgaaattcactgTAGATCTTTGAAGTTCTGATGATTTGATGAGATAAGCCACTTCTCCGTCTCTCGACAAACAGCTAGAGTTCAAGGCCACCACGTCTATTGGG
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495    72934 119 -   161274 TCCAACCTCTAAAATGCCCGTTGATAGTACTCCGTTGTAGTTCAGAAGATTTAATAAGATATGCAGAATCTCCATCTCGGGATAAGCAAATTGAATCCATTGCTATCGCATCAGTGGAc
i caeJap4.Scaffold17495 I 1350 C 0

a score=1910.000000
s ce10.chrX               865214 2 + 17718866 TG
s cb4.chrX              21280788 2 - 21540570 tg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   608993 2 -  1162296 tg
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       117088 2 +   783054 TG
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495    73053 2 -   161274 tg
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     43445 0 +   118955 C

a score=2184.000000
s ce10.chrX               865216 4 + 17718866 AAAA
s cb4.chrX              21280790 4 - 21540570 aaaa
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig24   608995 4 -  1162296 aaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    73055 4 -   161274 aaaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       117090 0 +   783054 C
e caeSp111.Scaffold412     43445 0 +   118955 C

a score=273.000000
s ce10.chrX               865220 1 + 17718866 A
s caeRem4.Crem_Contig24   608999 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    73059 1 -   161274 a
i caeJap4.Scaffold17495 C 0 I 32
e caePb3.Scfld02_62       117090 0 +   783054 C
e cb4.chrX              21280794 53 - 21540570 I
e caeSp111.Scaffold412     43445 0 +   118955 C

a score=-161.000000
s ce10.chrX               865221 52 + 17718866 TTCTAGTTTAGAACGGAGAAAAGCAAAATTAGACATTGTGCAGGAAACTTAA
s caeRem4.Crem_Contig24   609000 26 -  1162296 -------------------------aatatagattttgt-TAAGAAATTCGA
i caeRem4.Crem_Contig24 C 0 I 71
e caePb3.Scfld02_62       117090  0 +   783054 C
e caeJap4.Scaffold17495    73060 32 -   161274 I
e cb4.chrX              21280794 53 - 21540570 I
e caeSp111.Scaffold412     43445  0 +   118955 C

a score=0.000000
s ce10.chrX               865273 108 + 17718866 CCACTTCTCAGCGCCACCTATGCGTTGACCTTTCAGAATTTTCAGAAGGCAACACGTGCACACTTGGCGCGTGCTAGCGGCTGGCTTAAAAAACAACCAAAAACAAAA
e caePb3.Scfld02_62       117090   0 +   783054 C
e caeJap4.Scaffold17495    73060  32 -   161274 I
e cb4.chrX              21280794  53 - 21540570 I
e caeSp111.Scaffold412     43445   0 +   118955 C
e caeRem4.Crem_Contig24   609026  71 -  1162296 I

a score=809.000000
s ce10.chrX               865381 26 + 17718866 AAGAAATCCGTCGAACCGGATTCGAA
s caeRem4.Crem_Contig24   609097 17 -  1162296 AAGAAATCcg---------gttcgaa
i caeRem4.Crem_Contig24 I 71 I 36
e caePb3.Scfld02_62       117090  0 +   783054 C
e caeJap4.Scaffold17495    73060 32 -   161274 I
e cb4.chrX              21280794 53 - 21540570 I
e caeSp111.Scaffold412     43445  0 +   118955 C

a score=0.000000
s ce10.chrX               865407 57 + 17718866 CCAGTGACCTAAGGATACCTGCTGACTCTACAGTCCTCCGCTCTACCAACTGAGCTA
e caePb3.Scfld02_62       117090  0 +   783054 C
e caeJap4.Scaffold17495    73060 32 -   161274 I
e cb4.chrX              21280794 53 - 21540570 I
e caeSp111.Scaffold412     43445  0 +   118955 C
e caeRem4.Crem_Contig24   609114 36 -  1162296 I

a score=-1497.000000
s ce10.chrX               865464 133 + 17718866 TCGACGGCACGGAGGTGGACGGAAAAATGTGTCAATAAAAATGTTTGTTGCTTGAAAGACTTTCAATGCGTCTAAGTGGCAGATACGTAGTTACAATCGTATAAAACGGTTCCTGGCGGGACCTTTCTGTCTT
s caeRem4.Crem_Contig24   609150  81 -  1162296 TCGACTGGGAAGAGCCGGGTCGGCAAACTT------------------------------CTTCAGCG-GCCCGATTGGTCGACGCCGAG-----ATTTCGTAAAATTG-----AGTAGGAC-----------
i caeRem4.Crem_Contig24 I 36 C 0
e caePb3.Scfld02_62       117090   0 +   783054 C
e caeJap4.Scaffold17495    73060  32 -   161274 I
e cb4.chrX              21280794  53 - 21540570 I
e caeSp111.Scaffold412     43445   0 +   118955 C

a score=91.000000
s ce10.chrX               865597 1 + 17718866 T
s caeJap4.Scaffold17495    73092 1 -   161274 t
i caeJap4.Scaffold17495 I 32 C 0
e caePb3.Scfld02_62       117090 0 +   783054 C
e cb4.chrX              21280794 53 - 21540570 I
e caeSp111.Scaffold412     43445 0 +   118955 C
e caeRem4.Crem_Contig24   609231 0 -  1162296 C

a score=2832.000000
s ce10.chrX               865598 7 + 17718866 ACTCACG
s cb4.chrX              21280847 7 - 21540570 ACTCACA
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig24   609231 7 -  1162296 ACTCACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    73093 7 -   161274 atttACA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       117090 0 +   783054 C
e caeSp111.Scaffold412     43445 0 +   118955 C

a score=1607.000000
s ce10.chrX               865605 3 + 17718866 TCT
s cb4.chrX              21280854 3 - 21540570 TCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609238 3 -  1162296 TCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43445 3 +   118955 TCA
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    73100 3 -   161274 TCA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       117090 0 +   783054 C

a score=71292.000000
s ce10.chrX               865608 108 + 17718866 ATAAACTTCCTCGACTCAAATGAAGAAGCTTTTTGAACAGAATGAACCCGTAGACTTCCATCGTTTGCTACCAAAACCACAAATGATTCGAAATTGTTGGAATCTGA---A
s cb4.chrX              21280857 108 - 21540570 ATGAACTTCCTTGTCTCGAAcagtgacgtcttctggacaGAATGAATGCGGAGACTGCCGTCGTTTCCAACCAACACCACAAACGACTCAAAATTGTTGGAGTCTAA---A
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig24   609241 111 -  1162296 ATGAACTTTCGAGTCTCAAacaacgacgtcttctgaaccGAGTGAATACGAAGAGTTCCATCGTTGGCGACTAACACCACAAACGACTCGAAGTTGTtggaatctgaatga
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold412     43448 108 +   118955 ATAAACTTCCGAGACTCAAATTGCGAAGTTTTTTGAGCAGAATGAATACGAAGACTTCCGTCATTGGCAACCAAAACCACAAATGATTCGAAATTGTTAGAATCTTA---A
i caeSp111.Scaffold412  C 0 I 50
s caePb3.Scfld02_62       117090 108 +   783054 ATGAACTTTCGAGTTTCGAACTGAGAAGCCTTCTGGACTGAGTGAATTCGAAGCGTCCCATTATTTGTCACCAGCACCACAAAGGATTCGAAGTTAttggaacctga---a
i caePb3.Scfld02_62     C 0 I 34
s caeJap4.Scaffold17495    73103 108 -   161274 ATAAATGGTCTTGTTTCAAAAACTGCTGGTTTGGAAGTTGAAtgaatccgtaaatttccgtTGTTCGTGAGCAGTAGAGCAAACAATTCATATGAATTAGAAACTGA---A
i caeJap4.Scaffold17495 C 0 I 9

a score=-12562.000000
s ce10.chrX               865716 42 + 17718866 TCTCAATTCATATTAAATGTTTTTTTTTCAAATTCAGGAAA-------------T------------
s cb4.chrX              21280990 46 - 21540570 tgctgaTTAACAACTA---------CATGTTATCGATAACAGATAATGTTATTTT------------
i cb4.chrX              I 25 I 6
s caeRem4.Crem_Contig24   609359 21 -  1162296 tacTAATAGACA---------------------TGAAAACA-------------T------------
i caeRem4.Crem_Contig24 I 7 I 6
s caeSp111.Scaffold412     43606 39 +   118955 TGGTAATGGAAAGcca---ttctctcaaaaaagtcaaaaga-------------c------------
i caeSp111.Scaffold412  I 50 I 21
s caeJap4.Scaffold17495    73220 30 -   161274 ------------------------tttaaaaacataaaaaa-------------tagctttttAATG
i caeJap4.Scaffold17495 I 9 C 0
e caePb3.Scfld02_62       117198 34 +   783054 I

a score=110355.000000
s ce10.chrX               865758 183 + 17718866 CTCACTCTTTTTATTCAATATCCTAGCCACCATTCCATTTTTGATCTTCAGCCCTTCCAGCGCAGTGATCTTATAACTGTCGCGTTTCACCATCGGCTGACAATTATAGATTCGCAGCTGCTCCTCGGTGATGACGACGATTCGAGTGGATGCGGAGAACTGAAATAAC------CAAATAAATTGAGT
s cb4.chrX              21281042 162 - 21540570 CTCACTCTTCTTATTGAGAATTCTCGCGACGATCCCGCCCTTAATCTTGATCCCTTCCAACGCAGTTATTTTATAACTCTCCCTTTTAGAGATCGGCTGACAGTTGTAAACTCTCAATTGCTCTTCAGTGATGATGACAATCTTGGTTGATGCTGAGAACTG---------------------------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   609386 162 -  1162296 CTCACTCTTCTTGTTCAGAATTCTAGCGACCATTCCGTTCTTGATCTTCAATCCCTCCAACGCAGTTATTTTATAACTTTCACGTTTGACCATCGGTTGGCAGTTGTAAACTCTTAGCTGCTCCTCAGTAATGATGACAATTCTTGTCGATGCAGAGAACTG---------------------------
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold412     43666 179 +   118955 ctcacttttcttgtTCAATATCCTTGCTACCATTCcacttttgattttgaggCCTTCTAGCGCAGTGATTTTGTAGCTGTCTCTTTTGACCATCGGTAGACATTGATAAACTCTCAATTGTTCTTCAGTGATGATGACAATTCGTGTGAAGGcagaaaactgtttcaaa------taattaaaat----
i caeSp111.Scaffold412  I 21 C 0
s caePb3.Scfld02_62       117232 172 +   783054 CTTACTTTTCTTACTCAAGATTCTTGCGACAgttccatttttgatcttcagACCTTCTAAAGCAGTTATCTTGTAACTTTCCCGCTTGAACATTGGTTGGCAATTGTAAATTCTAAGTTGCTCCTCCGTGATAACAACAATTCTAGTCGACACAGAGAACTG-------------CAAATCAAGT----
i caePb3.Scfld02_62     I 34 C 0
s caeJap4.Scaffold17495    73250 185 -   161274 TTTACCTTTTTTGTTGGATAGCCTTGTTACAGCACCATTTCTAATTTTAAGGCCTTCCAAAGCAGTAATTTTGTAGCTATTCCGTTTTAACATTGGTAAACAATTATAAACACGTAGTTCTTCATCCGTTATTACAATGAGCTTCGTGGAAGCAGAAAACTTAAATGCAACTCTTTAAAGtaagt----
i caeJap4.Scaffold17495 C 0 C 0

a score=-1031.000000
s ce10.chrX               865941 5 + 17718866 ATGAA-
s cb4.chrX              21281204 4 - 21540570 -GAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609548 4 -  1162296 -TGAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43845 5 +   118955 ataAA-
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    73435 3 -   161274 ---aat
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       117404 0 +   783054 C

a score=-3645.000000
s ce10.chrX               865946 36 + 17718866 TAAT--TTCACGGAGTTAACTGGGGATACGCTAATGCC
s cb4.chrX              21281208 22 - 21540570 TAATCATTTatataataaaatg----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609552 21 -  1162296 TGTTATTCTATTGAAATAAGT-----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    73438 36 -   161274 --ttattttatgttttcaAATCTAGCTGCAAGAATGCC
i caeJap4.Scaffold17495 C 0 I 699
e caePb3.Scfld02_62       117404  0 +   783054 C
e caeSp111.Scaffold412     43850  0 +   118955 C

a score=0.000000
s ce10.chrX               865982 62 + 17718866 GCGGAGTCGCGCACCGGGAAATTTGAAAAAAAAACACATGGGAGACACGAAAAATTCTAGAA
e caePb3.Scfld02_62       117404  0 +   783054 C
e caeJap4.Scaffold17495    73474 699 -   161274 I
e cb4.chrX              21281230  0 - 21540570 C
e caeSp111.Scaffold412     43850  0 +   118955 C
e caeRem4.Crem_Contig24   609573  0 -  1162296 C

a score=-8174.000000
s ce10.chrX               866044 59 + 17718866 TTTTGACTACATTCGCATAAACTAAAAACTGGCAATTTTGCAACTCTTTT------TCATTCACA
s cb4.chrX              21281230 12 - 21540570 ------------------------------------ttt--accccATTT---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609573  7 -  1162296 -------------------------------------------CTCATTC---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       117404 21 +   783054 -----------------------------------TTTTGGATCcaataccaaaaa---------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    73474 699 -   161274 I
e caeSp111.Scaffold412     43850  0 +   118955 C

a score=-141.000000
s ce10.chrX               866103 4 + 17718866 CTCC
s caeRem4.Crem_Contig24   609580 2 -  1162296 --CA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43850 4 +   118955 CCTC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       117425 0 +   783054 C
e caeJap4.Scaffold17495    73474 699 -   161274 I
e cb4.chrX              21281242 0 - 21540570 C

a score=159235.000000
s ce10.chrX               866107 270 + 17718866 AAATCTCAACTTACATATCCTTCCTCATTTGTGATATCTAGATTAACAACCGGTTGCTTGTGAGGAATCGAGAGTTTCTTAATCTGTTCCGCTTTGAACGTCATTCTTAGTCCAACATCATGTTCGCTGATTGCGTAAAAGTAGACAGAGCCTTCGTGGAGCCCCACAGCTATAATGTCATCTACATTTTTGTCGTCGAGCACCGGAAAGCGCATCATTCGGAGACATGTTACGGTTCCTTTGGAATCTGGAAA---TA-------------TTGAAATTTCAGGG
s cb4.chrX              21281242 250 - 21540570 ------ATACTCACGTATCCCTCTTCGTTCGTGATATCCACATTGATAACTGGCTGTTTATGAGccattccaatttttttcacgaattCAGCTTTGAAAGTCATACGCAAACCGGCATCGTGTTCGTTGATAGCAAAGAAGTAAACACCACCTTCCTGAAGACCCACAGCAATGATATCATCGACATTCTTGTCATCGACAATCGGGAAGCGCATTGTTCGGATGCATGAGACTGTACCTTTGGAATCTgcaaa---ta---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609582 254 -  1162296 GAAAGGAAACTCACATATCCTTCTTCATTGGTAATATCAATGTTTATAACCGGTTGCTTATGAggaatcacaattttcttgatttgttCTGCTTTGAATGTCATTCTCAGTCCGACATCATGCTCGTTGATAGCAAAGAAGTAGACACCTCCTTCATGGAGACCCACGGCAATGATATCATCCACGTTCTTGTCGTCGACAATCGGGAAGCGCATTGTACGGAGACATGTAACAGTTCCTTTCGAGTCTGAAAG--------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43854 250 +   118955 AAACTTCCACTTACATAGCTCTCCTCATTAGTAATATCAATATTGACAACTGGCTGTTTATGAGAAATCGATAGCTTCCTGACTTGTTCCGCTCTGAATGTCATCCGAATACCAACATCATGCTCGTTTATCGTATAAAAATATACGCCACCCTCGTGAAGACCAACGGCAATGATGTCGTCTACATTTTTGTCGTCAACGATTGGGACACGCATGGCTCGAAGACAAGTCACCGTTCCTTTGGAAtctg------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       117425 281 +   783054 --aatgtcactTACGTATCCTTCTTCGTTTGTGATATCCACATTTATCACTGGTTGTTTATGAGGAATACTTATTTTCTTCACTTGCTCCGATTTGAAAGTCATCCGAATTCCTACGTCATGCTCATTGATGACGTAAAAGTAAACATTTCCCTCATGCAGACCCACAGCAATGATATCATCTACATTCTTGTCGTCATTTATTGGAAATCGCATTGTTCGGAGACATGTCACCGTTCCTcttgagtctgaaaa---aagagggatGTACTGTTGAGTTTTCAGGG
i caePb3.Scfld02_62     C 0 I 768
s caeJap4.Scaffold17495    74173 266 -   161274 aattcaaaactcacATATCCTTGATCGTTCGTGATATCAATATTTAAAATGGGTTGTTTACGGTTGATTGCAATTGTTTTGATTTGCTCCACATTAAATGTCATTCTTAACCCGACGTCATGTTCCGTTACAGTGTAAAAATAGACAGTTCCGTTGTTCAAACCAACAGCAAGGACATCATCTACCCTCTTTTCATCTTCCAGCGGAAACCGCAGTATTTTGATGCATGTGACTTGTCCTGGAAAAACTGGCAGGCATAATGGCAT--------------------
i caeJap4.Scaffold17495 I 699 C 0

a score=-33022.000000
s ce10.chrX               866377 121 + 17718866 TGAGATAGGAATTGCTT---TTGATTTTTATTCAG-----AAGATTTGAAGAT-----TTTGAAAAGCATGTGACCACGTTTAAGGCTTTTCACCTAATCTATGAGCACTTCAAAAAACCCCGTTTC--------AGATTTC
s cb4.chrX              21281492  29 - 21540570 ----------------t---ttgattttt---------------------------------------------------------------------------aatgtttccaGATTAC------------------TTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609836  36 -  1162296 ----------------------GATTATT---------------------------------------------------------------------------GTTGTTTACAGAAGACCGATTTA--------GGATTT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     44104  37 +   118955 tgagaaaaaaaat-cat---tcaattg-----------------------------------------------------------------------------AATGAGGAGAGAAA------------------------
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    74439 139 -   161274 TAAAATGAAAGCTATTTAAATCAGTTTTTcaatagaaataaaaatataagaACCCAGATTGGAGAAAAAACTATAATCGCTTCATTTTATTTAGTCAGGGTTTGGGAGCTCTGCAAGAGCTGAATTCCATAACAAGGAC---
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       117706 768 +   783054 I

a score=-6049.000000
s ce10.chrX               866498 156 + 17718866 CACTTACTCT---------------CAGCATAGCAATC------CAGCACTC-----CCAGCTCT----------TCCCTTGCTTCAAT-----TGGTCTCTCCATGAACAC--CTCTTCCTCTTCAAAATCGTCAATTCGCTTTGGACTT-----------GTCTCATGCTGCACATGATTT----GAAGATGAA----------------------------------GCCACT-----GCACCTCCTG-----AA
s cb4.chrX              21281521 143 - 21540570 -ACTTACTTT---------------CGGCATAACAATCTAATGTCAAGGTAC-----CTAATCCT----------TCTCCGACTTCGAT-----TCCTCTTTCCATGTA-----ACCTTCCTCGTCGAAATCATCAACTTTAGTGATTTGT-----------TGATTGTGATGTCGGAGAGTT----------------------------------------------------------CCTTCATCAG-----AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   609872 143 -  1162296 -ACTCACTCT---------------CAGCATAACAATC------CAAGACAC-----CTAAATCT----------TCTCTAGCCTCGAT-----AGGTCTCTCCATGTA-----CCCATCCTCGTCAATTTCCTCGACACGCCTGGGACTT-----------CCCTCGTGTTTTCCACGGACT-----------------------------------------------GACTTG-----TCTGCGTCGA-----AA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     44141 144 +   118955 TATTTACTTT---------------CCGCGTAACAATC------CAGTACAC-----CTAATTCT----------TCTCGTGCTTCAAT-----ACCTCTCTCCATAAATAC--CTCCTCCTCTCCACAGTCGTCGATTCTACGGAAA--------------CTATTATGAATACGAGAACCT-----------------------------------------------GCTTGT-----TCTGTCTCCG-----AG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       118474 145 +   783054 CACTTACTTT---------------CGGCGTAACAATC------CAAAACAC-----CCAAATCC----------TCTCTCGCCTCAAT-----TGGCCTTTCCATGTAGCC--GCCTTCTTCGTTGTATTCTTCAATCCTTTGCGAGGTTGA--------CTTATCTGGAGTATG---------------------------------------------------------TGT-----TTCATACTCAACACTAG
i caePb3.Scfld02_62     I 768 C 0
s caeJap4.Scaffold17495    74578 247 -   161274 TACATGCCTTCTAGCAAACTAAAACCCGCATAGTCAAT------TAGGGCACATTAACTATTTCTATTATACaaccccctcagcgcaatggaaatggcttCTCCgagcggatggtctatcgaccaaaacATCTTAGAAATAGCTGACAGACAATTAtttagcttatctcaacagttagaaactgtttgaaaaagaaataattggcaaattttaaaaactgaccaagatgggattttgagcacccCCTCCCG-----aa
i caeJap4.Scaffold17495 C 0 I 344

a score=50003.000000
s ce10.chrX               866654 115 + 17718866 TCC--ATTAATGTT------TCAGTGCCCTTCTTTTTTCGTCGGAACGTCTTTCGAAGTGACTTCTTGAGACTTTTGAATCGTTGGAATTGGTTGGCACTGACATTACTTGAATCATCTGAAA
s cb4.chrX              21281664 121 - 21540570 TTC--GACATCAAAGTGGTATCGGGAGTCTTCTTCTTACGACGGAAAGTCTTTCGAAGTGATTTCTTGAGACTCTTGAACCGTTGAAACTGAGTTTGAGTGACAATGCTTGTTTCTTCTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   610015 121 -  1162296 TCG--AGGATCATTGTGGAGTCTGGAGTCTTCTTCTTGCGACGGAATGTCTTGCGGAGGGActtcttcaaacttttgaagCGTTGGAATTGATTTGGGTTGACGTTGCTTgtctcttctgaaa
i caeRem4.Crem_Contig24 C 0 I 604
s caeSp111.Scaffold412     44285 118 +   118955 TTT--ATCACTATCGTCGAATCTGgggtcttcttttttcgtcgaaaAGTTTTACGGAGAgatttcttcaaacttttgaatcGTTGGAATTGATTCGCGTTCACTCCACTTGTATCTTCTG---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       118619 120 +   783054 TTCCGATTAGCATAGTTGAATCTGGCGtttttttCTTGCGACGGAAAGTTTTACGAAGAGATTTTTTCACACTCTTGAACCGTTGGAATTGGTTTGCGCTCACAACACTTGTgtccactg---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    74825 344 -   161274 I

a score=-17396.000000
s ce10.chrX               866769 155 + 17718866 TGAGCGTAGACTTCGAAGATGCTTTATGTTAAAGGCGGCCGAGCTTCATGGTTTTGAAAACTGGTGGTTTCGATAATTGCTAATTTTCAAAATTGTTAGCAATTTCCAATCATCCCGGGGTCAGACTCCCCAATCTACAAAC---TTTGTTCTTTCCA
s cb4.chrX              21281785  33 - 21540570 ------------------------TACG------------------------CCGAAAATGTATTGTT----------------------------------------------------------------ACGTGCATTCGGC-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     44403  25 +   118955 ----------------------------------------------------TTtatagaatattttt-----------------------------------------------------------------tgagaaaac----------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       118739  25 +   783054 -------------------------------------------------------aaaaattagttat--------------------------------------------------------------AAATGTGAAGCC----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    74825 344 -   161274 I
e caeRem4.Crem_Contig24   610136 604 -  1162296 I

a score=4998.000000
s ce10.chrX               866924 25 + 17718866 AATTATCTGAAAACTCACTGTTGTC
s cb4.chrX              21281818 16 - 21540570 ---------AAAACTCACGAAGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   610740 25 -  1162296 AATTAAGGAAAAACTTACGCTGATC
i caeRem4.Crem_Contig24 I 604 C 0
s caeSp111.Scaffold412     44428 25 +   118955 gaagaaataaAGTCTCACGTTGGTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       118764 25 +   783054 AGTAAAGCGAAAACGTACAGTGGTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    74825 344 -   161274 I

a score=94337.000000
s ce10.chrX               866949 137 + 17718866 ATCATTGAATGAATTCGCATAGACAAGATATCCAAAGTTTACATCAAGCATCACAATTCCAAAGTTACTTCCAACTGCCAAGCAGTGATACTTGTGAAGATAGACAATATCGGTGATTCGGTGGCTGGGAT--GCATTG
s cb4.chrX              21281834 137 - 21540570 CTCGTTGAAAGAGTTGGAGTAGACGATATATCCGTGATTCACGTCCAACATCGCCACACCAAAGTTACTACCGACAGCAAGACAATGATACTTGTGCAGATACGCAATATCAGTGACTCTGTGACTTGAGT--GCATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   610765 137 -  1162296 ATCGTTGAAAGAGTTGGCATAAACAATGTATCCGTGGTTTACATCAAGCATTACCGCTCCAAAGTTGCTTCCCACGGCGAGACAATGATACTTGTGGAGGTAGGCAATGTCAGTGACCCTGTGACTTGGAT--GCATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     44453 137 +   118955 TTCGCTGAAAGAGTTTGCGTACACAAGATATCCGTGATTAACGTCCAGCATCACAATTCCAAAATTGCTTCCTATAGCTAGACAGTGATATTTGTGTAGATAAGTTATGTCGGTAACACGATGACTTGGAT--GCATTG
i caeSp111.Scaffold412  C 0 I 249
s caePb3.Scfld02_62       118789 137 +   783054 GTCATTAAAGGAATTAGCAAAAACGAGATATCCATGGTTTACGTCGAGCATTGCAACACCGAAATTGCTTCCTATGGCTAGACAGTGATACTTATGAAGATAAGCAATATCGGTTACTCGATGACTTGGAT--GCATCA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    75169 139 -   161274 ATCGTTGTAGGATTTCGAATAAACTAAATAGCCATGTTTCACGTCCATGCATGTGAATCCAAAACTTCCGCCCACTGCTAAACACtgatatttatgaaaaaatgcaatgctTCTTATTTTATGATTAAAGTTCACATTG
i caeJap4.Scaffold17495 I 344 C 0

a score=898.000000
s ce10.chrX               867086 2 + 17718866 AG
s cb4.chrX              21281971 2 - 21540570 AG
i cb4.chrX              C 0 I 92
s caeRem4.Crem_Contig24   610902 2 -  1162296 AG
i caeRem4.Crem_Contig24 C 0 I 297
s caePb3.Scfld02_62       118926 2 +   783054 GG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    75308 2 -   161274 AA
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     44590 249 +   118955 I

a score=-743.000000
s ce10.chrX               867088  7 + 17718866 AACACCA---------
s cb4.chrX              21282065  7 - 21540570 aaaactc---------
i cb4.chrX              I 92 C 0
s caeRem4.Crem_Contig24   611201  7 -  1162296 AAAACTT---------
i caeRem4.Crem_Contig24 I 297 C 0
s caeSp111.Scaffold412     44839  6 +   118955 -AAAGTA---------
i caeSp111.Scaffold412  I 249 I 3
s caePb3.Scfld02_62       118928  7 +   783054 AAAACCA---------
i caePb3.Scfld02_62     C 0 I 430
s caeJap4.Scaffold17495    75310 14 -   161274 --AACCAGTCTGAACG
i caeJap4.Scaffold17495 C 0 C 0

a score=263297.000000
s ce10.chrX               867095 618 + 17718866  
s cb4.chrX              21282072 598 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   611208 617 -  1162296  
i caeRem4.Crem_Contig24 C 0 T 4
s caeSp111.Scaffold412     44848 621 +   118955  
i caeSp111.Scaffold412  I 3 C 0
s caePb3.Scfld02_62       119365 625 +   783054  
i caePb3.Scfld02_62     I 430 C 0
s caeJap4.Scaffold17495    75324 733 -   161274  
i caeJap4.Scaffold17495 C 0 C 0

a score=3910.000000
s ce10.chrX               867713 4 + 17718866 CCTG
s cb4.chrX              21282670 4 - 21540570 CCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     45469 4 +   118955 cctg
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       119990 4 +   783054 CCTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    76057 4 -   161274 CCTG
i caeJap4.Scaffold17495 C 0 I 2786
e caeRem4.Crem_Contig24   611825 4 -  1162296 T

a score=-471.000000
s ce10.chrX               867717 2 + 17718866 AA
s cb4.chrX              21282674 1 - 21540570 A-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     45473 2 +   118955 aa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       119994 2 +   783054 AA
i caePb3.Scfld02_62     C 0 I 38
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeRem4.Crem_Contig24   611825 4 -  1162296 T

a score=272.000000
s ce10.chrX               867719 22 + 17718866 GAAAACATAATAAATGACTAAA
s cb4.chrX              21282675 22 - 21540570 GAAAGAATTGtacatttttcaa
i cb4.chrX              C 0 T 2
s caeSp111.Scaffold412     45475 19 +   118955 --aaaaattattaatcaTAAA-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       119996 38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeRem4.Crem_Contig24   611825  4 -  1162296 T

a score=675.000000
s ce10.chrX               867741 10 + 17718866 ATAACTATAA
s caeSp111.Scaffold412     45494 10 +   118955 ACAACTATGa
i caeSp111.Scaffold412  C 0 I 15
e caePb3.Scfld02_62       119996 38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e cb4.chrX              21282697  2 - 21540570 T
e caeRem4.Crem_Contig24   611825  4 -  1162296 T

a score=0.000000
s ce10.chrX               867751 436 + 17718866 AAATTTAACAAGGATGCAAAATGTTTTTCAAGTCAAAAAGGTTTGCGCAACGTAAAAATTGTCGAATTTCAAGTTCAGAATTTTCTACAGTAGCAGCAGGTAGTTTTTCATTGTTGTATAGAAGTTTTTTTGTGGAGACATACTGAACAATATTatcactttctgaatattactttagtcttaattgaaagttttgagaaggtgctcaaaaactgactcaaaaagccaatttgccggttggcacagttacgcggcacactgcgactcctaggcagttttcgaacattttctacatacgtgcatttgaagttaaatttttttagaaagtataaatatttctctatgtttctatataaacttgcaaataaaaaaTTTAGCACTACCATGACGAATTTTAGCACTACTATGAGAAATTACCCTTTCCAAAAGTTAAAAA
e caePb3.Scfld02_62       119996  38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e cb4.chrX              21282697   2 - 21540570 T
e caeSp111.Scaffold412     45504  15 +   118955 I
e caeRem4.Crem_Contig24   611825   4 -  1162296 T

a score=490.000000
s ce10.chrX               868187 13 + 17718866 AGAAAAACAAAAC
s cb4.chrX              21282695 13 - 21540570 aagaaaatagaAA
i cb4.chrX              T 2 C 0
e caePb3.Scfld02_62       119996 38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeSp111.Scaffold412     45504 15 +   118955 I
e caeRem4.Crem_Contig24   611825  4 -  1162296 T

a score=13104.000000
s ce10.chrX               868200 79 + 17718866 CTAACCGATTCCAGACGATTCCATACATTTTCCTCAATTTCAATAGCTCTCGAGTGGGTAGTTGGCGTACTATTATTAA
s cb4.chrX              21282708 79 - 21540570 CTCACTGCTTCTAAGCGATTCCAAACGTTTTCCTCGATTTCAATAGACTTTGCATGCGTAGTCGGAGTGCTATTGTTAA
i cb4.chrX              C 0 T 90
s caeRem4.Crem_Contig24   611821 79 -  1162296 CTGGCAGTTTCCAACCGATTCCACACGTTCTCCTCAATTTCAATTGCTTTTGCATGTGTCGTCGGTGTACTGTTGTTGA
i caeRem4.Crem_Contig24 T 4 T 75
e caePb3.Scfld02_62       119996 38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeSp111.Scaffold412     45504 15 +   118955 I

a score=0.000000
s ce10.chrX               868279 296 + 17718866 aaaggattaaaggattaaaggacgatccgttcttcaagtgctatgcactgcggatctgggattcaggtacactgcctggtggtgatccctctgggctgtaatttaagtcacgtcctagccggggactgtggccgataatccagtcgtggattgctccacttcccaatagaggctgggtgaacctagggggtgaggccggacttgaactcgtgacctccagactgctagcggccaccactaccgactgagctatctgcccTACTATGAGAAATTACCCTTTCCAAAAGTTAAAAAAG
e caePb3.Scfld02_62       119996  38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e cb4.chrX              21282787  90 - 21540570 T
e caeSp111.Scaffold412     45504  15 +   118955 I
e caeRem4.Crem_Contig24   611900  75 -  1162296 T

a score=430.000000
s ce10.chrX               868575 11 + 17718866 AAAAACAAAAC
s cb4.chrX              21282697 11 - 21540570 gaaaatagaAA
i cb4.chrX              T 90 C 0
e caePb3.Scfld02_62       119996 38 +   783054 I
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeSp111.Scaffold412     45504 15 +   118955 I
e caeRem4.Crem_Contig24   611900 75 -  1162296 T

a score=305.000000
s ce10.chrX               868586 3 + 17718866 CTA
s cb4.chrX              21282708 3 - 21540570 CTC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       120034 3 +   783054 CTT
i caePb3.Scfld02_62     I 38 C 0
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeSp111.Scaffold412     45504 15 +   118955 I
e caeRem4.Crem_Contig24   611900 75 -  1162296 T

a score=546.000000
s ce10.chrX               868589 1 + 17718866 A
s cb4.chrX              21282711 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     45519 1 +   118955 a
i caeSp111.Scaffold412  I 15 C 0
s caePb3.Scfld02_62       120037 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    76061 2786 -   161274 I
e caeRem4.Crem_Contig24   611900 75 -  1162296 T

a score=3965.000000
s ce10.chrX               868590 11 + 17718866 CCGATTCAAGA
s cb4.chrX              21282712 11 - 21540570 CTGCTTCTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   611825 11 -  1162296 CAGTTTCCAAC
i caeRem4.Crem_Contig24 T 75 C 0
s caeSp111.Scaffold412     45520 11 +   118955 CAGTTTCCAGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       120038 11 +   783054 CCGCTTCGAGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    76061 2786 -   161274 I

a score=202398.000000
s ce10.chrX               868601  762 + 17718866  
s cb4.chrX              21282723  646 - 21540570  
i cb4.chrX              C 0 I 343
s caeRem4.Crem_Contig24   611836 1048 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     45531  610 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       120049  625 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    78847  721 -   161274  
i caeJap4.Scaffold17495 I 2786 C 0

a score=102289.000000
s ce10.chrX               869363 253 + 17718866 ---------------------------------------------AACACACCTGTATAGCTTCATCCTCATAGTTCCGTAGACTGGTCTTCATGACAAACTGTGATTCGTTA-AATACGCCAACACAACCGTTTTCCGCAATGAGCATCAAAATTGATGGCTTTTCCGGTAAGCAGGTTATACTGGCGAGCTCTGTGTCGTCAGGCAGCCATTTTTCAAAATCTTCAGCTTTGACGAGAACTTCTGATTTGAGGGTTTTGGATTTGATTCGGTATATTGTGTTATTCATGGCTGTAAA
s cb4.chrX              21283712 253 - 21540570 ---------------------------------------------AACATACCTGAATCGCctcatcttcaaaatttttcaaagtagtTTGCATCACGTATTGAGATTCATTG-AAGACGCAGACGGTACCGttctcaaaaatgagcatGATCACATTCGATTTCTCGGGAAAAGTTGTGATACTTGAGAGTTCTGTGTCGTTCGGAACCCATTTCTCATAGTCATCATTGTTGATCAACACTTCCAATTTCACTGTTTTGGATTTGATCCGATAGACGGTGTTGTTGATAGCTaaaaa
i cb4.chrX              I 343 C 0
s caeRem4.Crem_Contig24   612884 253 -  1162296 ---------------------------------------------TCCTCACCTGGATAGCCTCatcttcgaaatttttcagggAGATTCTCTTTATGAATTGTGACTCGTTA-AACACTCCGACGGTTCCATTCTCCAAAATCAACATCATGACAGCTGGCTTCTCTGGGAGTGAAGTGATGCTTGATAAGTTGTAGTCAGACGGAAGGAACTTTTCATAGTCTTCGCTTGTCACCAACACTTCCAGCTTTAATGTCTTTGACTTGATACGATGGATTGTGTTGTTGACGCCTGTAAA
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold412     46141 246 +   118955 ----------------------------------------------------ttgaattgctTCGtcctcgaaatttttcagaacagtCTTCATGACATATTGAGATTCATTG-AATACGCCAACAGTTCCATCATCAGCTATAAGCAAGATAACGTTACATTTATCTGGCAGAGTAGTGATGCTTGACAATTCACTTTCTTCTGGAAGCCACTTGACAAAATCGGCTGTGTTTATGAGCACTTCTGGCTTTAGAGTTTTGGATTTGATGCGATGAATGGTGTTGTTCATGCCttaaaa
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       120674 245 +   783054 ----------------------------------------------------CTGGATCGCCTCATcctcaaagtttttcaaaactgttgtCATTACGTAGTTAGATTCGTTG-AATACACCAATGTTTCCATTGTCAGAGATCAGCATAATTACATTCGACTTTTCCGGGAAAGTTGTGATGCTTGAAAGCTCTGAATCTTCCGGAAGCCATTTTTCGAAGTCTTCTTTGTTAATAAGCACCTCTagtttgatagtttttgacTTGATTCGGTAGATTGTGTTGTTGATAcctgaaa-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    79568 298 -   161274 AGTAACCCGTTTTATAGTAAATTGTGAAGAAAGTGCACTATTAAAGACTAACTATAATTGGTTCAtcttcgaaatttttcaaagttacTGTCATTATAAACTGCGTTTTGTTGTAATATGC-AACTGTGCCATTTTTATCTATAACCAACAACGACGAAGAGTGTTTTGGTAATGATGTAATGCTTGAAATTTCTCCGCCGCCAGATGTCCATAGCATAATATCTTCGTTAGTAAGCAATGTTTCAGGTTGCATAGCATCGAGCATAACACGGAAAATAGTATTGTTTAGGCCTAAACG
i caeJap4.Scaffold17495 C 0 C 0

a score=-1943.000000
s ce10.chrX               869616  2 + 17718866 AA----------
s cb4.chrX              21283965  2 - 21540570 aa----------
i cb4.chrX              C 0 I 153
s caeSp111.Scaffold412     46388  2 +   118955 ga----------
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       120919  2 +   783054 ga----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    79866 11 -   161274 -ACTCATTTTTG
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   613137 17 -  1162296 I

a score=-5273.000000
s ce10.chrX               869618 30 + 17718866 TTGAAACTTTTTG----GACTTACAAGCTATCAA
s caeSp111.Scaffold412     46390 27 +   118955 ttaaaaatgaCCG----GAATTTCGA---ATTAC
i caeSp111.Scaffold412  C 0 I 3
s caePb3.Scfld02_62       120921 19 +   783054 aagaaaat----------agttT--A---ATCAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    79877 30 -   161274 TCGACAGTATTAGTATTGATATTTTA---TTTA-
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I
e caeRem4.Crem_Contig24   613137 17 -  1162296 I

a score=-8172.000000
s ce10.chrX               869648 172 + 17718866 --------AACCATAAATGCTTTCTGTTTTGCTCACGTCATAATGAAGCTTGATTGAAAATA------AATTCCTGTTACGGTAAACC-------TAGTTTCCAGT----TTTTCAATATTTTTTCACACTTA---TTTCGGAGTCAATTTGATAAAGTTGAA------AAGAAAGT---TTGGTTTGACTGAAATGCCATATTGCTGT---
s caePb3.Scfld02_62       120940 162 +   783054 --------ATACATGAAACCATACCACG----GCCCGGCAAAATCGACACGGGTGCGAAACA----------------ACTATAAACCAACTAAATGTTCTacgat----ttttcta-attttttcacatgaa-------aagatgtatttgaacacgttGAGTC----CGGAAAAT---TTGGCATCGTTAGGACGTTAtgatttagt---
i caePb3.Scfld02_62     C 0 I 66
s caeJap4.Scaffold17495    79907 196 -   161274 AAGCAACTACActcaaatttatttaatt----gagCAACGACCTTAA----AACTTGAAATCCTGCCCAATATGTTTTGTTTTAGAAT-------CGGTTTCTAATGTTATTTGCAA-ACTTGCTAGCAAAAAAGAGGGCGGGCTTCATGTTTTAAAGTCGCACCTtaactgaaaataaattaaacttttttggctCCCATCATTATGTTTT
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46417   3 +   118955 I
e caeRem4.Crem_Contig24   613137  17 -  1162296 I

a score=-757.000000
s ce10.chrX               869820 53 + 17718866 AAATCTTACC-----ATTTTCAATTTTTAATTGTTTTTTTTTC----TCTGGGAAGACTTTT-----------------------
s caeJap4.Scaffold17495    80103 85 -   161274 CAAGGTTGCTGTTAggttttcgaataaaaacagtttttcttaCAAGTTATGGGGAGCCCGTTCGTGTAAAATCAGCAAGCAGCGa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       121102 66 +   783054 I
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46417  3 +   118955 I
e caeRem4.Crem_Contig24   613137 17 -  1162296 I

a score=-725.000000
s ce10.chrX               869873 54 + 17718866 ACGCTTTAGTTTGAAAA------------TTAATTTGCACAACTA---TATCAACATCGTGCAATTTTT
s caePb3.Scfld02_62       121168 49 +   783054 AAGTATTATCTTAAAAA------------CTAAGCAGTAAAACC----Cagcaaaactg----attttt
i caePb3.Scfld02_62     I 66 C 0
s caeJap4.Scaffold17495    80188 66 -   161274 atgttttgagaaaaaaagttggAGTCACTCTCAATTAGATGATTGCATCATTAGAATCAT---ATTTTT
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46417  3 +   118955 I
e caeRem4.Crem_Contig24   613137 17 -  1162296 I

a score=-2638.000000
s ce10.chrX               869927 20 + 17718866 TTGAAACTAAGTTTCAATGA---------
s caeRem4.Crem_Contig24   613154 18 -  1162296 TTGAGCCTA--TTTCTGTGA---------
i caeRem4.Crem_Contig24 I 17 I 1
s caePb3.Scfld02_62       121217  7 +   783054 -------------tcggtga---------
i caePb3.Scfld02_62     C 0 I 9
s caeJap4.Scaffold17495    80254 18 -   161274 -----------CTTTAAGGGTTTGAAAAA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46417  3 +   118955 I

a score=6369.000000
s ce10.chrX               869947 120 + 17718866 AAAACTTACAAAAAACTAGGGCAAATGTGTCATCT-----GATAACTTTTGGACATGCGTTATATCCCATTTTGATT----------TGTGATTTTCGTTAAATCGCAGTTCCTCCTTTTTTGTTATTACACCAT
s caeRem4.Crem_Contig24   613173 120 -  1162296 ATAACTCACTGAAAATGAGCGCAGAAGCGTCATCA-----GACAACTTCTGGACATGACTTGTGTTCCACTTGTGTT----------TTGGGTTGTCACCGAACCGGAACTCGTCTTTCTTTGTGATAACTCcat
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     46420 120 +   118955 AAAACTTACAGAAAACGAGCGCGAAGGCGTCGTCA-----GATAATTTCTGAATGTGTGCACTACTCCATTTGTATT----------TTGGATTGGTGCTGAACCTcaactcttctctctttgtgATAACTCCAT
i caeSp111.Scaffold412  I 3 C 0
s caePb3.Scfld02_62       121233 121 +   783054 aaaaatcatagagaattgttaC-AGGCCATTGTTACCTTTGAGCCGTTTTAGACGT---CTCAGGTCGATTTGCCGTGCCGTGATACTCGCATAACTGAGGGTCGGTCAGCCttttagcctttta----------
i caePb3.Scfld02_62     I 9 C 0
s caeJap4.Scaffold17495    80272 120 -   161274 CTGACTTAcaataaattaaataattttcagaatcc-----gATTTTTCTTGAATGTGCATAAAATCCCATCTGAATG----------AACTATTTGTTTCTAGCTTCACCTCTTCGAGTTTTGTTACAATTCCAt
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I

a score=-457.000000
s ce10.chrX               870067 22 + 17718866 CTGaaaaatataatttttaaaa
s caeRem4.Crem_Contig24   613293 22 -  1162296 ctaaaaattttaaattttaaaa
i caeRem4.Crem_Contig24 C 0 I 35
s caePb3.Scfld02_62       121354 11 +   783054 -----gatttttactt------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    80392 20 -   161274 ctgaaaattgagttttgtTA--
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540  0 +   118955 C

a score=-320.000000
s ce10.chrX               870089 15 + 17718866 tcttttaattGAATT
s caePb3.Scfld02_62       121365 13 +   783054 tttttccgacaaa--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    80412 15 -   161274 TTTAGTTAGTGAATT
i caeJap4.Scaffold17495 C 0 I 4626
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540  0 +   118955 C
e caeRem4.Crem_Contig24   613315 35 -  1162296 I

a score=-386.000000
s ce10.chrX               870104 153 + 17718866 TACAGCCGATATtttgccgaaattgttcggcgaaattttgaaaacatgtcgtttggtaagtttcagaa------tttgccaggcttaacaa------atttggataa-atgtgacttaaaaatttttttttgtaggactactac----------------------tactgactga----------------atgcttggaaca
s caePb3.Scfld02_62       121378 186 +   783054 ---aactgtttttctccCACAACT-TTGggcgaaaatcgaaaa--------------gagtttcggaaaatgttttttatccGCATAAAAACGCTATATTCGGTCGACATgtcagaaaaaacatgtttcttttcgGTCTCCGACTTGTAACACCGGGAAAAAGTGATGCTGACCGAGACAGAGCGGGCCAAGAACATTGGAACA
i caePb3.Scfld02_62     C 0 I 69
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540   0 +   118955 C
e caeRem4.Crem_Contig24   613315  35 -  1162296 I

a score=0.000000
s ce10.chrX               870257 44 + 17718866 cgttagattttttattaggttctttcttttctattagtaagtaa
e caePb3.Scfld02_62       121564 69 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540  0 +   118955 C
e caeRem4.Crem_Contig24   613315 35 -  1162296 I

a score=1002.000000
s ce10.chrX               870301 26 + 17718866 cttcatctacaaattttttaatatga
s caePb3.Scfld02_62       121633 26 +   783054 CATCATCggacagtttttgaacatga
i caePb3.Scfld02_62     I 69 I 108
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540  0 +   118955 C
e caeRem4.Crem_Contig24   613315 35 -  1162296 I

a score=0.000000
s ce10.chrX               870327 54 + 17718866 aatcaaatttttttttgtaaatttgtagcatgtgcggcaaattttaagaactgc
e caePb3.Scfld02_62       121659 108 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21283967 153 - 21540570 I
e caeSp111.Scaffold412     46540  0 +   118955 C
e caeRem4.Crem_Contig24   613315 35 -  1162296 I

a score=532.000000
s ce10.chrX               870381 33 + 17718866 cATACATTCCTATTTTAGTATAATTTTAAAACG
s cb4.chrX              21284120 22 - 21540570 aatacgTTTC-----------AATTTGAAAGCG
i cb4.chrX              I 153 C 0
e caePb3.Scfld02_62       121659 108 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e caeSp111.Scaffold412     46540  0 +   118955 C
e caeRem4.Crem_Contig24   613315 35 -  1162296 I

a score=273.000000
s ce10.chrX               870414 1 + 17718866 A
s cb4.chrX              21284142 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   613350 1 -  1162296 A
i caeRem4.Crem_Contig24 I 35 C 0
e caePb3.Scfld02_62       121659 108 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e caeSp111.Scaffold412     46540 0 +   118955 C

a score=-747.000000
s ce10.chrX               870415  6 + 17718866 ------AATAAC
s cb4.chrX              21284143 12 - 21540570 ATATTTTATTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   613351  6 -  1162296 AC------TTAC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       121767  6 +   783054 ------GTTTAC
i caePb3.Scfld02_62     I 108 C 0
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e caeSp111.Scaffold412     46540  0 +   118955 C

a score=17900.000000
s ce10.chrX               870421  845 + 17718866  
s cb4.chrX              21284155 1184 - 21540570  
i cb4.chrX              C 0 I 1276
s caeRem4.Crem_Contig24   613357 1170 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     46540  772 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       121773  680 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    80427 4626 -   161274 I

a score=1935.000000
s ce10.chrX               871266 60 + 17718866 AGTGACCGCTGGGTGGTCGATAGG------TAATAGGGTGCCCTAGCAGGTGTTGCGAAATGCGCG--
s caeRem4.Crem_Contig24   614527 62 -  1162296 GGTGACCAG--TACGGATGGGAAGGTGAGCGGAGAGGGCAC----AATGGGGTTGCGAAATGAGCGCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     47312 54 +   118955 AGTGACCAC--GTTGAACGGGAGG------TATAGGGACAC----ATAGGTGTTGCGAAAGACGCG--
i caeSp111.Scaffold412  C 0 I 343
s caePb3.Scfld02_62       122453 52 +   783054 ---AACACC--ACTGTGTGTCAGG-----CTAGGGGGACAC----GGGGGGATTGCATAGCGCGCG--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21285339 1276 - 21540570 I

a score=178.000000
s ce10.chrX               871326 19 + 17718866 -AAGGGTGT-----AAACGTGTTGG
s caeRem4.Crem_Contig24   614589 25 -  1162296 ATTGGTGGTAATAGAAAGGTGTTGG
i caeRem4.Crem_Contig24 C 0 I 1544
s caePb3.Scfld02_62       122505 19 +   783054 -CTGGCCGT-----ACAAGTATCAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21285339 1276 - 21540570 I
e caeSp111.Scaffold412     47366 343 +   118955 I

a score=523.000000
s ce10.chrX               871345 14 + 17718866 ACACGAACAGATTG
s caePb3.Scfld02_62       122524 14 +   783054 ACAAGGAGAGGTCG
i caePb3.Scfld02_62     C 0 I 706
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21285339 1276 - 21540570 I
e caeSp111.Scaffold412     47366 343 +   118955 I
e caeRem4.Crem_Contig24   614614 1544 -  1162296 I

a score=0.000000
s ce10.chrX               871359 1001 + 17718866  
e caePb3.Scfld02_62       122538  706 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e cb4.chrX              21285339 1276 - 21540570 I
e caeSp111.Scaffold412     47366  343 +   118955 I
e caeRem4.Crem_Contig24   614614 1544 -  1162296 I

a score=382.000000
s ce10.chrX               872360 4 + 17718866 CCAA
s cb4.chrX              21286615 4 - 21540570 ccaa
i cb4.chrX              I 1276 C 0
e caePb3.Scfld02_62       122538 706 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e caeSp111.Scaffold412     47366 343 +   118955 I
e caeRem4.Crem_Contig24   614614 1544 -  1162296 I

a score=-516.000000
s ce10.chrX               872364 22 + 17718866 -CTTTCAGATTACCTTTTT----GTTC
s cb4.chrX              21286619 23 - 21540570 gtttcgaaatcattttttctaat----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     47709 18 +   118955 -CCTTCAGATTAACTTgcc--------
i caeSp111.Scaffold412  I 343 C 0
e caePb3.Scfld02_62       122538 706 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I
e caeRem4.Crem_Contig24   614614 1544 -  1162296 I

a score=1527.000000
s ce10.chrX               872386 12 + 17718866 ATAAATGTCTCG
s cb4.chrX              21286642 12 - 21540570 ataaACGCTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   616158 12 -  1162296 ATAACTCCttga
i caeRem4.Crem_Contig24 I 1544 C 0
s caeSp111.Scaffold412     47727  9 +   118955 ---aatatttta
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       122538 706 +   783054 I
e caeJap4.Scaffold17495    80427 4626 -   161274 I

a score=58377.000000
s ce10.chrX               872398 194 + 17718866 TTTTCCAATTTCTTACTTTTCTCAAC----AATTCCTTCTTACAAGA------TGATGACTTTAGAAAGACTGAAAACGAATCTGCGACTAGTCAAACAGAAATAATTGATAACGATAGTGATTTTGTAATCATTC--CCGCTTGATAAACTGTGCATTTTTCA------CTTTTTGGCAAAAGTATAGGTGTATATCATTCTTAAACTTTT
s cb4.chrX              21286654 167 - 21540570 ---------CATACTATTCTCCCA-----------------AAACGA------TGATGACTTTAAAGAGACTGAAAACGAATCTGCGACTAGTCAAACATAAAACA-TGATAACGATAGCAATTTTGTAATCACGC-ATCG-TTGATAAAGTGagcattttcacttttttcttct---------tattagtttttccc-ttacccaattttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   616170 195 -  1162296 --ttcatttcttcttatttctccaTC-----TTCCCTTCTTACAATA------TGATGACTTTAAAGAGACTAAAAACGAATCTGCGACTAGTCAAACATAAAACA-TGATAACGATAGTGATTTTGTAATCATTC-AGCG-TTGATAAACTgtacattttcactttttttttttgactgaaagtATAAGTTTCTCTC-CTTTCCAACTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     47736 200 +   118955 ttttctcaacCCACTTTTTCCTAAAC----ACCTTCCTCTTACATTTTGACTATGATGACTTTAAAAAGACTAAAAACGAATCTGCGACTATTCAAACATAAAATAATGATAACGACAGTGATTTTGTAATCATACTAGCGCTTGATAAAATGtgcatttttca--cttttttctgccCAAAATTGTAAGTTT------CTTTCAAccttca
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       123244 186 +   783054 ttttcgaatcttgTATTTGCTGGAATTTCGACTTTCTTTCTACACCT------TGATGATTTTGAGAAGACTAAAAACGAATCGACGACTAGTCAGTCATAAAACACTGATAACGATAGTGATTTTGTAATCATTC---CGCATTAT--ACtgtgcttttttc-------tttttgccgAGCAGTGTAAGTTT------GTATCGAA--TCA
i caePb3.Scfld02_62     I 706 C 0
e caeJap4.Scaffold17495    80427 4626 -   161274 I

a score=213474.000000
s ce10.chrX               872592 531 + 17718866  
s cb4.chrX              21286821 527 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   616365 478 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     47936 515 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       123430 481 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    85053 685 -   161274  
i caeJap4.Scaffold17495 I 4626 C 0

a score=300.000000
s ce10.chrX               873123 1 + 17718866 C
s caeRem4.Crem_Contig24   616843 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     48451 1 +   118955 C
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       123911 0 +   783054 C
e caeJap4.Scaffold17495    85738 0 -   161274 C
e cb4.chrX              21287348 0 - 21540570 C

a score=-12142.000000
s ce10.chrX               873124 111 + 17718866 AGCATTTTTTTAACGAGAAGTTTTTAAGTTCAGTCTCTGAATAAAAATGAGTATGTAAGGTTTGGAAAATTGCCTAAAATCTTTCGCGCAACTTGTTAATTAAAGTGTGTT
s cb4.chrX              21287348  23 - 21540570 -----------------------------------------------------TGCGAAAATTGTAGc---------------------------taaaatca--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   616844  27 -  1162296 ---------------------------------------------------CATATCAGCCTTGGAAC---------------------------TTGATCAAGG------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       123911  21 +   783054 ----------------------------------------------------Atttcaaactccaaaa---------------------------atgtt-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    85738   0 -   161274 C
e caeSp111.Scaffold412     48452   0 +   118955 C

a score=222.000000
s ce10.chrX               873235 8 + 17718866 TATTTCAC
s caeSp111.Scaffold412     48452 7 +   118955 TATATCA-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       123932 7 +   783054 tttttca-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    85738 0 -   161274 C
e cb4.chrX              21287371 0 - 21540570 C
e caeRem4.Crem_Contig24   616871 0 -  1162296 C

a score=179020.000000
s ce10.chrX               873243 348 + 17718866 AAAAAAATAGCATTTAT------TTCTCAAAAAAATAGCAGATATGTGAAGTAAGTATCAGGGAAATGGAATATTTTTCTACATTTAAAAAATTAAAGAACAATTGTGCTCTTTTTCAGAGACATGCAAACGAGTTCTCTCCGTTATTTAACCACTCAACAAGCCCTCGCCGATTTGGCATTTTTCATAGAGTTCATGAATCAACAATACGGGTTCAAGAATCCAAGATGGGTCACATTTGGTGGTAGTTATCCAGGCTCCCTTGCAGCATGGTTCAGGCAAAAATACCCGCAATTAACAGTGGGTTCAGTTGCTAGCAGTGCTCCTGTCAATTTGAAACTTGATTTCTATGGT
s cb4.chrX              21287371 249 - 21540570 --------------------------ttaaaa-------------------------------------------------------------------------------aatttaagagaCATGGAAACCAGCTCCCTGCAGTATCTTACTACTCAACAAGCTTTAGCAGATTTGGCATACTTCATTGAGTCAATGAACCAGAAATACGGTTTCAAAAATCCTCGTTGGGTAACTTTTGGAGGCAGCTATCCAGGATCATTGTCCGCTTGGTTCAGACAAAAATATCCAGAACTGACAGTCGGATCCGTGGCGAGTAGTGCTCCAGTTAACTTGAAGCTTGATTTCTATGGC
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   616871 249 -  1162296 --------------------------TTCCAA-------------------------------------------------------------------------------ATTTCCAGAGACATGACCACCAACTCCCTCCGCTACCTCACCACTCAACAAGCCCTCGCTGACTTGGCCTATTTCATCGAGTCCATGAACCAACTGTACGGTTTCAAGAACCCACGATGGGTTACTTTTGGAGGAAGTTATCCAGGATCGTTGTCTGCCTGGTTCAGACAAAAGTATCCCCAATTAACGGTTGGATCAGTGGCTAGCAGTGCTCCAGTCAACTTGAAACTTGACTTTTACGGT
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     48459 260 +   118955 --------------------------TCAGAATAAT----------------------------------------------------AAGATCAAA-------------TAGCTATAGAGATATGGAAACCAGCTCCCTTCGTTATTTGACGACCCAACAAGCATTGGCAGACTTAGcttattttattgaatctATGAATCAACTCTACGGATTCAAAAACCCACGTTGGGTGACTTTCGGAGGAAGTTATCCTGGATCATTATCTGCTTGGTTCAGACAAAAATATCCAGAGTTGACAGTAGGTTCCGTTGCCAGTAGTGCCCCAGTCAACTTGAAACTTGACTTCTAC---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       123939 249 +   783054 --------------------------acagaa-------------------------------------------------------------------------------aatttcagcGATATGGAAACCAGCTCCTTGCGTTACCTAACAACTCAACAAGCCCTTGCTGATTTGGCTTTCTTCATTGAGTCTATGAACCAACAATATGGGTTCAAAAATCCACGATGGGTCACTTTTGGTGGAAGTTATCCAGGATCATTGTCAGCTTGGTTCAGACAGAAATATCCTCAACTGACAGTTGGATCAGTGGCTAGTAGTGCACCGGTTAATCTCAAACTTGATTTCTAcggt
i caePb3.Scfld02_62     C 0 I 124
s caeJap4.Scaffold17495    85738 272 -   161274 AACGAATCAGCATTCagttgacatttttaaaa----------------------------------------------------------------------------------ttcagaaatATGGATACTTCTTCCTTACGCTTACTCACTACCCAGCAAGCTCTTGAAGACCTTGCCTACTTTATTATATCAATGAATAAAAAgcacaatttcaaaaatccacGCTGGGTAACTTTTGGTGGAAGCTATCCAGGCTCATTGTCTGCATGGTTCAGACAAAAGTATCCAGAGTTGACTGTTGGCTCAGTTGCTAGCAGTGCTCCTGTAAATCTTAAGCTTGATTTTTACGGT
i caeJap4.Scaffold17495 C 0 C 0

a score=-37031.000000
s ce10.chrX               873591  44 + 17718866 AATCT-------------------------------------------ACATAGATTTTTAGTACTTGTA----------------------------------------------------------------------------------------------------------------------------AATTATATATAGTG-----TTC
s cb4.chrX              21287621  34 - 21540570 AGTGA-----------------------------------------------GGTTTACT-----TTGTA----------------------------------------------------------------------------------------------------------------------------GTGAACATAAAAT------ATT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   617121  56 -  1162296 AGTCATCGAA--------------------------------------AAATGGCTTCTT-----TTATA---------------------------------------------------------------------------------------------------------------------TGATAAGgttaatttatatttttcgaatt
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62       124312 205 +   783054 AATCGACAAAATCAGAACTGGGTCATAATTCTTATTCAACACGata-gaaacatgttttt-----ttgtaaCCTCTAAAATATACTCTGCTAAtcatattgaaattttcgactgACTGTCATCAGTGGTAGCTTCTAATGCTCTTTGAAATGATACGACTAGTTACAACATTCTCACAATGaa--ttcattattattattctgaaatttc---cta
i caePb3.Scfld02_62     I 124 C 0
s caeJap4.Scaffold17495    86010  75 -   161274 ---------------------------AATGTTTTGAGATAGATCATGAAAAAGTATATG-----TTTTA--------------------------------------------------------------------------------------------------------CGAATTGAACTTTTACTCAAATTTCTGAATAGTTTTC-----
i caeJap4.Scaffold17495 C 0 I 120
e caeSp111.Scaffold412     48719   0 +   118955 C

a score=65043.000000
s ce10.chrX               873635 637 + 17718866  
s cb4.chrX              21287655 394 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   617177 403 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     48719 388 +   118955  
i caeSp111.Scaffold412  C 0 I 4702
s caePb3.Scfld02_62       124517 391 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    86205 951 -   161274  
i caeJap4.Scaffold17495 I 120 C 0

a score=240605.000000
s ce10.chrX               874272 522 + 17718866  
s cb4.chrX              21288049 466 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   617580 488 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65226 471 -   118955  
i caeSp111.Scaffold412  T 52983 C 0
s caePb3.Scfld02_62       124908 539 +   783054  
i caePb3.Scfld02_62     C 0 I 34
s caeJap4.Scaffold17495    87156 469 -   161274  
i caeJap4.Scaffold17495 C 0 C 0

a score=607.000000
s ce10.chrX               874794 2 + 17718866 TA
s cb4.chrX              21288515 2 - 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618068 2 -  1162296 TA
i caeRem4.Crem_Contig24 C 0 I 31
s caeSp111.Scaffold412     65697 2 -   118955 tg
i caeSp111.Scaffold412  C 0 I 1
s caeJap4.Scaffold17495    87625 2 -   161274 TA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       125447 34 +   783054 I

a score=494.000000
s ce10.chrX               874796 2 + 17718866 CA
s cb4.chrX              21288517 1 - 21540570 -A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     65700 2 -   118955 ca
i caeSp111.Scaffold412  I 1 C 0
s caeJap4.Scaffold17495    87627 2 -   161274 TA
i caeJap4.Scaffold17495 C 0 I 261
e caePb3.Scfld02_62       125447 34 +   783054 I
e caeRem4.Crem_Contig24   618070 31 -  1162296 I

a score=-12.000000
s ce10.chrX               874798 4 + 17718866 AAAA-
s cb4.chrX              21288518 5 - 21540570 AAaga
i cb4.chrX              C 0 I 643
s caeSp111.Scaffold412     65702 4 -   118955 aaaa-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       125447 34 +   783054 I
e caeJap4.Scaffold17495    87629 261 -   161274 I
e caeRem4.Crem_Contig24   618070 31 -  1162296 I

a score=159.000000
s ce10.chrX               874802 4 + 17718866 ATCA
s caeSp111.Scaffold412     65706 4 -   118955 aaca
i caeSp111.Scaffold412  C 0 I 18
e caePb3.Scfld02_62       125447 34 +   783054 I
e caeJap4.Scaffold17495    87629 261 -   161274 I
e cb4.chrX              21288523 643 - 21540570 I
e caeRem4.Crem_Contig24   618070 31 -  1162296 I

a score=0.000000
s ce10.chrX               874806 603 + 17718866  
e caePb3.Scfld02_62       125447  34 +   783054 I
e caeJap4.Scaffold17495    87629 261 -   161274 I
e cb4.chrX              21288523 643 - 21540570 I
e caeSp111.Scaffold412     65710  18 -   118955 I
e caeRem4.Crem_Contig24   618070  31 -  1162296 I

a score=400.000000
s ce10.chrX               875409 33 + 17718866 AATTTTCGAAATTACACGCAGGTAAAAATCGAT
s caeJap4.Scaffold17495    87890 28 -   161274 aactttgaaaattttacgca-----acatattt
i caeJap4.Scaffold17495 I 261 C 0
e caePb3.Scfld02_62       125447 34 +   783054 I
e cb4.chrX              21288523 643 - 21540570 I
e caeSp111.Scaffold412     65710 18 -   118955 I
e caeRem4.Crem_Contig24   618070 31 -  1162296 I

a score=910.000000
s ce10.chrX               875442 1 + 17718866 T
s cb4.chrX              21289166 1 - 21540570 T
i cb4.chrX              I 643 C 0
s caeRem4.Crem_Contig24   618101 1 -  1162296 T
i caeRem4.Crem_Contig24 I 31 C 0
s caePb3.Scfld02_62       125481 1 +   783054 T
i caePb3.Scfld02_62     I 34 C 0
s caeJap4.Scaffold17495    87918 1 -   161274 t
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     65710 18 -   118955 I

a score=154572.000000
s ce10.chrX               875443 217 + 17718866 TTTCAGGCTACGAATGTCGTTCTTCCAAATGGCTCTCTCGACCCATGGCACGCTTTGGGTACTTATGGGACCATCAAAAGCCAATCTCTTCTTCCATACCTTATCAACGGAACTGCGCATTGTGGAGACATGTACCCATCATATGATGGAGAGCCGGGATCTTTGCTAGCGGCTCGTGCTTTTGTTAAGGAAAATGTTCGGCAATTTATTAGTGAGT
s cb4.chrX              21289167 217 - 21540570 TTTCAGGCTACAAATGTCGTACTTCCAAACGGTTCTTTAGACCCGTGGCACGCATTAGGTACCTACAAAACTAATGACAATCAAAATCTTCTCCCTTATCTCATCAATGGAACAGCCCACTGTGGAGACATGTATGCATCCTATGATGGCGAACCTGCTTCTCTTCCAGCTGCTCGTGCATTCATCAAGCAACATGTTCGCGAGTTCATTAGTAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618102 217 -  1162296 TTTCAGGCAACCAACGTCGTTCTTCCGAATGGCTCCCTCGACCCATGGCATGCATTGGGAACCTACAAAACTGTTGAAAGTCAAGCTCTTCTCCCATACCTTATCAATGGAACCGCCCATTGTGGAGACATGTATCCTTCTTATGACGGCGAGCCAAATTCTCTTCCAGCGGCTCGCGCATTCATAAAGCAGCATGTCAGAGAGTTTATTAGTGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65728 216 -   118955 TTTCAGGCCACTAACGTTGTTCTTCCAAATGGGTCTCTTGACCCATGGCATGCTCTTGGAACCTACAACACTGTTGAGTCACAAGCTCAAAGACCTTACTTGATCAATGGCACCGCTCATTGTTCCGACATGTATGAATCTTATGACGGAGAACCAGCTTCTCTTCCTGCTGCACGCGCTTTCATTAAACAGAGTGTTCGCGAATTTATTAGTGAG-
i caeSp111.Scaffold412  I 18 C 0
s caePb3.Scfld02_62       125482 217 +   783054 TTACAGGCTACAAACGTCGTTTTACCAAATGGCTCACTTGATCCATGGCATGCTCTTGGAACCTACAACAAGAAAGAAGCACAATCTCAACTTCCTTATCTGATTAATGGAACTGCACATTGTGGAGATATGTATGCTTCATATGATGGAGAACCGCAGTCACTTTTAGCTGCCCGCGCATTCATCAAACAGAATGTTAGAGATTTTATCAGTGAGt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    87919 217 -   161274 tttccggCAACTAACATCGTCTTACCAAATGGTTCTCTTGATCCGTGGCATGCCTTGGGAACATACAAAACAGACgaaaacataaaattgctGCCTTACTTGATTAATGGAACTGCGCACTGTGCCGATATGTATCCAGAATACATTGGCGAGCCCACATCTTTACCGGCAGCGCGTGCCTTTGTTAAACAGAACGTGAAAACTTTCATAAGTGAGT
i caeJap4.Scaffold17495 C 0 I 70218

a score=-16306.000000
s ce10.chrX               875660 36 + 17718866 GGAGATTTCTCTTTTATTCGGCAAAGTTTTCGGAAA-----------------
s cb4.chrX              21289384 36 - 21540570 ACTGGATTCTTTTTcg-------------ttggaaaaattgaattaa----aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618319 22 -  1162296 GTT--------------------------TTGAAAGTAGTCTATCCA----A-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65944  6 -   118955 -----------------------------------------CGTTTG------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       125699 36 +   783054 tca-cattctttttt--------------ttcaaattcaactgtttggata--
i caePb3.Scfld02_62     C 0 I 52
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-7623.000000
s ce10.chrX               875696 56 + 17718866 CTAGAGTGACCGGTATTCAGTTTTGTAACTTATCACCACGTCATAAAATCAGTAAT
s cb4.chrX              21289420  5 - 21540570 ------------------------ctaat---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618341  9 -  1162296 -------------------------TAATTTGTC----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65950 25 -   118955 CTTGAG----------------TTataagttttca----attatg-----------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       125735 52 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=8332.000000
s ce10.chrX               875752  98 + 17718866 AAGTATAGTGATAC--TTTCAGGATACGATCCAAATGTCGATGGTCCAGGTGGCAGTTCATCTAGC---------------GCTTCACTGTTTGTTGTGGCTTATATTGTTTGTG---
s cb4.chrX              21289425  68 - 21540570 ----------------tttcaggatACAATCCAGCCGTAGATGGTCCAAAAGGTAGCGCTGCTTTC---------------CAGTCTGTGTTCTTTGTG-------------------
i cb4.chrX              C 0 I 202
s caeRem4.Crem_Contig24   618350  90 -  1162296 -------------TTGTTTCAGGATACGATCCAAATGTTGATGGACCAAAGACTAGTGCCGCCTCC---------------AATTCGTTATTCGTAGTTATTTCTCTTATTGCTTATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65975  77 -   118955 ------------aC--TTTCAGGATACGATCCAAATGTTGATGGTCCACATGGTGCCGC----------------------ATCTTGTTATTCATTGTT--CAGTATTATGGCTT---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       125787 109 +   783054 aattttgttttttt--tttcagggtatGACCCAACTGTGGACGGACCTTCAGGTTCTACTGCTAGCCTACCTCTTTTCTTTATCTTATCATTTGTTGCT----ACATTGTTCGTT---
i caePb3.Scfld02_62     I 52 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-353.000000
s ce10.chrX               875850 10 + 17718866 GATTC--CTCTT
s caeRem4.Crem_Contig24   618440  4 -  1162296 --------TCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     66052 12 -   118955 TATTGCTATTTT
i caeSp111.Scaffold412  C 0 I 4
s caePb3.Scfld02_62       125896 10 +   783054 CATTG--Atttt
i caePb3.Scfld02_62     C 0 I 850
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289493 202 - 21540570 I

a score=-255.000000
s ce10.chrX               875860 8 + 17718866 TGTCTAAT----
s caeRem4.Crem_Contig24   618444 8 -  1162296 GGTCCAAT----
i caeRem4.Crem_Contig24 C 0 I 217
s caeSp111.Scaffold412     66068 8 -   118955 ----taattaat
i caeSp111.Scaffold412  I 4 C 0
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289493 202 - 21540570 I

a score=273.000000
s ce10.chrX               875868 3 + 17718866 TTT
s caeSp111.Scaffold412     66076 3 -   118955 ttt
i caeSp111.Scaffold412  C 0 I 348
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289493 202 - 21540570 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=0.000000
s ce10.chrX               875871 149 + 17718866 TTGTTGTTCCTTCGGACAATAAATATCAATTTTTATATGAGTGTGTGTCAATCCAATAAAACAAATTTTACTTTCATAGTTGTGAATACATATAACCTAAAAATTGATACGTCCAACAAAAATCATTTTCATCAGCATTAATCAGGTGC
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289493 202 - 21540570 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=822.000000
s ce10.chrX               876020 178 + 17718866 GCGGCAATTGATGAAAATTTTGAAAAACGGTTACCGAATTTTCTGAAATTAGAATTTTCAGAAATATATACCTGAAAAGAGTTAAGACGTGTACTATTTTGTTGTGAAATATTGACTTTTTAAG---CTCCGAATGTGATAAACAGAACGATAGGAACC--TTTTTTTTAATTCTCAATGAAT
s cb4.chrX              21289695 150 - 21540570 acaaaaatcgacgaaaatcgacgaaaatcgcTGTCGATTTCATCGACTCta------tcaaaaatcgacattcgaaaa----------------------atcaacaaaaaccgacgtttcaaaagtcgatgaaagtga-----aaatcgacaaaagtcgatttttgtcgattttgaatcgac
i cb4.chrX              I 202 I 42
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=0.000000
s ce10.chrX               876198 49 + 17718866 ACTGAACAAATCTGGTGGAATTTAGTAATTTCTTAACTATAGTTAGGTT
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289845 42 - 21540570 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=1046.000000
s ce10.chrX               876247 26 + 17718866 TTTAAAATCCAGGAAATTTTAGCAAC
s cb4.chrX              21289887 26 - 21540570 TTTAATGTCCAAGAAGATTTCACGGc
i cb4.chrX              I 42 I 104
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=0.000000
s ce10.chrX               876273 94 + 17718866 TATCGAAATTGACAGTTCTGCATCAATGTTTTTCTTGATACCTAATTTTCACAAACTATACATTTCACTTTCCGTATGGAATTTAGTGAGTCAT
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21289913 104 - 21540570 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=-1396.000000
s ce10.chrX               876367 197 + 17718866 CCTTTTTC------GCAAAAGTGCACATATGCATGTAGTGTGTTG--CAAGTCG---------GGGGACCTCCCATC-----ATTCTATTTTT-----------------------------------TCTCGCTATTTTTCTTTTCTTTCATTTT----TGCTAGACCTACATGCGAGCAAATGAGGAGAGTTTTAAAAGTGAC-------------GTGACGTGAAAGTGATGTGTCTTACGCGAATTTT-----TATTGTTCGATTTGTTTCG
s cb4.chrX              21290017 270 - 21540570 cctttTTCTGGTCTATAAATGTCCTAACATGACTCAGGTGTGTTTTctaaatcattttgaagtggtggcctaacttctgcaaatttcgttttctaagccaccacgagttgacctagaaatgaccaAAATTACCCTGTTgtgtttttaggccattttgacatggtggcctaacttttg------caagttgagttttctaggccaccacgagTTCAATTGAAACCCGAAAAGgtcgatttttcggcgactttcgtcgacttttgtcgatttttgtca
i cb4.chrX              I 104 I 158
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=0.000000
s ce10.chrX               876564 147 + 17718866 CAAAACACCGTCTGGCTTGGGTTGATGAATATTAAGCTGCTCCATTTTCCAAAAACATTTCAACTTTGAAAAATTTACCACTAACCAAATTGCACATTTCTTCTGAAATGTACTCGTGCTTCTCTTGACAGCTGACTTTGCTCAAAC
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21290287 158 - 21540570 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=1034.000000
s ce10.chrX               876711 138 + 17718866 TAAATTATATAGTTTGCATTTTATTTCAGCATTAAGATATTTGTTTAACATAACACTTTTTTCCAGAAATGCAAATATATATTTATTCAACTCTTCAACTTTCAACTTTCTTCAACTTTTAGTAAAAACTATAATTAT
s cb4.chrX              21290445 126 - 21540570 taaatttcaaagtttacaaAATATCTCCGATTTTCGA------GTCGACTCGGCACTCTATTCC-----TGCAAAGAAAAGGTTCTT-AAATGTATGTTTTGTAACATTTTATAAAGTGTATTGTGAATTGCAATTAC
i cb4.chrX              I 158 I 72
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=0.000000
s ce10.chrX               876849 81 + 17718866 TCAACAATGTTTTGAAATTGTTTTAAGGAATAGGAAAATTCAGTTTTAACTTTTTGTTGGTACATCTATTGTGTTTGATTG
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21290571 72 - 21540570 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=408.000000
s ce10.chrX               876930 52 + 17718866 AAATAATTTGAACTGATCTGAATCTTTTCCAGTTCAGTTTTACAGATTTACG
s cb4.chrX              21290643 50 - 21540570 AAATAGTCTTCATTTATCCTTAT-TTCTCCATTCTATTTTCGCTTGTTC-CA
i cb4.chrX              I 72 C 0
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I
e caeRem4.Crem_Contig24   618452 217 -  1162296 I

a score=-207.000000
s ce10.chrX               876982 22 + 17718866 TCTTTGTGTTTCTAAAAATGTA
s cb4.chrX              21290693 17 - 21540570 --CCTGATCT---CAAGATATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618669 22 -  1162296 TCTTTGTTCTACGCAAACTAAT
i caeRem4.Crem_Contig24 I 217 C 0
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66079 348 -   118955 I

a score=-1840.000000
s ce10.chrX               877004 22 + 17718866 -AATTGTTTCATTAATAGTTCGC
s cb4.chrX              21290710 12 - 21540570 -ATCTGTTTcgcc----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618691 19 -  1162296 -AAATATTTCGCCAct-tccc--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     66427 22 -   118955 aatttttttctctgct-gttcac
i caeSp111.Scaffold412  I 348 I 3
e caePb3.Scfld02_62       125906 850 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-21147.000000
s ce10.chrX               877026 160 + 17718866 ATTTCTTTGTGCTTCCTTCA-------------TTTTCTCTTTTCACTTTTCC------------TCTCCCCATTGTC---CTTTCCG-----------AGATGATATCTGTGTCTCTCGTTGTTTGTTGCAAGAGAC--------------A-AGCAAGTTCGCTCC--------GTCGCACAAACGCGGGG----------------------ACACA-CTCACG----TAGTGTC--TCTCTGTCCTC--
s cb4.chrX              21290722 145 - 21540570 -----------------------------t---ttttcttctttccattAC--------------ACTCCGCTAGCCT---CTTTCCG-----------------------------ACGACTTATTGTGTTTAAAA---------------G-TGCAAGCGCGCTCT--------GTTg-acagagaaacgagacgcATGGAAACGTCGTATACACACAGCACACGCATataatttcactttttctt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618710 224 -  1162296 tttcttctgttctcatccttcccttcttat---tcttctcctttctctttctgccaa--ttccttcctcccctcacctgtcctttccGCGATATAATCTACGTTGCATTAGCCTC-CCCGTCTCATCGGACACGAACGTTGTGCGGGGCACtg-tgcaaatgcgctcc--------acgg-AGAACAATAGGAAACA---GAGAACGAAACCCGTACACA-CACGCGcttattatttc----tttctt-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     66452 172 -   118955 tttttttcgttcgcttatctccatttccatccactttccccttcctttcttct------tcttcttcaccttcctcac---ttttcGG-----------------------------------CGTTGAGCGCAAAAA--------------GATGCAAACGCGCCCC--------ATTG-ACAAGTCCAAGAAACACACAAGA-----------ACGTA-TATGCActcataattta--tttttctttgcgt
i caeSp111.Scaffold412  I 3 I 2
s caePb3.Scfld02_62       126756 171 +   783054 atctcttcattcatctttct---tttcctt---tgttctcttttctttcttctgtgacattttctctccccctattct---ttctcCG-----------------------------------CCTGACAAACAACAa--------------g-tgcaaatgcgctctgcTGTACAGTTG-GCAAGCACAAACACC-------------------ACGCA-TTTACACTAATAAAGTA--TCCTTGTTTCTTT
i caePb3.Scfld02_62     I 850 I 56
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-6831.000000
s ce10.chrX               877186 47 + 17718866 TCCTTCT-CTGCCTGTATATCGGCCCTTTCCTCGGCCGCTTCGAATTC--------------
s cb4.chrX              21290867 33 - 21540570 ttctttt-ttttttg-----------tttcgccAG--GATGCGGA-CC--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618934 24 -  1162296 ctcgttt-ctcctcgt----------tttcttcA-------------C--------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     66626 48 -   118955 -tcgtttattttttgtcctACTTAACTTACTTCG-------------CTTCATTCCTAATTT
i caeSp111.Scaffold412  I 2 C 0
e caePb3.Scfld02_62       126927 56 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=11841.000000
s ce10.chrX               877233 175 + 17718866 -------------TTCAT------------TCGCGTTTTCTAATGGATTCGCATTG-TTTCAGGGTGAATATGGATCCGCAGCAAGTGAATAATGATGAA--ATACGTGACAATTTGTCCAGAAGTCGATCATCGCTTTCCGCTCATTTTCCGCAAATTCCTTCATCAATGCA------------CGATGGGATTCAATCGTTTTTTGGGGTTTG
s cb4.chrX              21290900 191 - 21540570 TTTTTCCGC--ATTTCTCGCCGTTTTCTCGTCACTTTTC----------ATGTCAG-TTTCAGGTAGTA-ATGGATCCGCAAC---TGCCAATAGATGAC--AGCCGTGAAAGTTCTCCAAGAACGCG---GTCGATATCCGCGCATTTTCCCCAACTAGCGACTGCGATACAAATGCCATATGCCGATGGAATTCACACGTTGTTTGAGGTA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   618958 175 -  1162296 TTCTGACACAAATTTCATGAAGATTTT---CCACATTTT----------ATCATTG-TTTCAGCGTAAA-ATGGACCC----------CCAACAAGTGCCCGAGCCG-------TCGTCACGAAGTCG---GTCGTTATCTTCTCATTTCCCACAGATGCCCACTTCGATGCA---TCCTTATGCCGACGGTATTCATTCGCTATTTGGGGTG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     66674 174 -   118955 -------------TAAATTGgatttta---tcgattttcc-ggtgaaaaaatattgttttcagaacctG-ATGGACCCGCAACACAtacaaaacaatgaa--attcgAGATAATTTGGCCAGGACACG---CTCGATATCAGCACATTTTCCACA---AAACTCGCCGATGCA---TTCAT------------TGAGCACGTTGTATGAGGTATG
i caeSp111.Scaffold412  C 0 I 59
s caePb3.Scfld02_62       126983 176 +   783054 -------------TTAATTCATGTTCG---TTGTGTTTTC-AAAGGAATAGTTTTG-TTTCAGAGTAAA-ATGGACCCGCAGCATGTACAAAATCATGAC--AGTCGGGATAACCTCGCGCGAACGAG---GTCAATATCTGCACATTTTCCGCAGATAGGCTCTTCGATGCA---TCAAC------------TTCATACCCTGTTTGAGGCAAG
i caePb3.Scfld02_62     I 56 I 4
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-2333.000000
s ce10.chrX               877408 22 + 17718866 TTATTGTGAA----ATTTTTTTGAAC--
s cb4.chrX              21291091 12 - 21540570 --------------ATTTTCtcaaac--
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig24   619133 18 -  1162296 --------AGTGTCATTCTTTGGAAA--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       127163 28 +   783054 TTATTATCACACTCGCTCTTTtattacg
i caePb3.Scfld02_62     I 4 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66848 59 -   118955 I

a score=-3262.000000
s ce10.chrX               877430 45 + 17718866 TTTATAGTTTAAACAGTGATTGAATTATCTACCAATTTAGGGTTC------
s caeRem4.Crem_Contig24   619151 34 -  1162296 -CTGAGATATGA-----GATGAAGTTGTAT-----TTCAGAGTGC------
i caeRem4.Crem_Contig24 C 0 I 6
s caePb3.Scfld02_62       127191 24 +   783054 ----------------------tttttttt-----ttcagaacacatTGCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21291103 46 - 21540570 I
e caeSp111.Scaffold412     66848 59 -   118955 I

a score=546.000000
s ce10.chrX               877475 1 + 17718866 A
s caeRem4.Crem_Contig24   619191 1 -  1162296 A
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold412     66907 1 -   118955 A
i caeSp111.Scaffold412  I 59 C 0
s caePb3.Scfld02_62       127215 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21291103 46 - 21540570 I

a score=6283.000000
s ce10.chrX               877476 37 + 17718866 AATACGGAATATCAAAATCAATCGACGTCCGCAA---GTT
s cb4.chrX              21291149 35 - 21540570 AACGTCGAGTTTCAAAAccaatcatcatcatcaag-----
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig24   619192 37 -  1162296 AACTCAGACATTTTAAACCAGTCAACGTCCAGAAATC---
i caeRem4.Crem_Contig24 C 0 I 64
s caeSp111.Scaffold412     66908 34 -   118955 AATCAGGAATTCCAAAATCAATCGACGTCAACTA------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       127216 34 +   783054 AATCCTGAGTACCAAAATCAAACAACCTCAACGA------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=1291.000000
s ce10.chrX               877513 34 + 17718866 TTCCGAATGATCGAGTTTCCATGTCAAGTTTTGA
s cb4.chrX              21291184 15 - 21540570 -------taatcg------------aaattttga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     66942 13 -   118955 ---------ACAG------------AAGTTTTGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       127250 13 +   783054 ---------ATCG------------GAGTTTCGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   619229 64 -  1162296 I

a score=-9542.000000
s ce10.chrX               877547  75 + 17718866 TGAGA---ATC-----ACGAGGCAACGGATGC-----TGATGGAAATGAAAGAGATCAATGT-----TAGTTGTTTCTT--------------------------------------GGAATTGATACAAA
s cb4.chrX              21291199  81 - 21540570 agaaa---acc-----aCGAATCGCCTGATCA-----CTCTAGAATTGAAAGAGATATGCGT-----AAGTATTCccac--atcaaaa------------------------------aatttgatagaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   619293 126 -  1162296 aaaaa---atcaatgaacaATTAGGATAATGAGAGATTTTGAGGATTGAGACGAGTGTGATTccgagaaaagttttgaa--attaaaatttctttaGAAAAATGATCATTGTGTAGTTGAATTCATCGAAA
i caeRem4.Crem_Contig24 I 64 C 0
s caeSp111.Scaffold412     66955 103 -   118955 CGAATTGCGCA-----ACGATTCAGCAGATAC-----ATCGAGAAACGAAAGGGACCAGCGT-----GAGTTTTG------ATGACAA-------CATAactcaattgttttttttcggagttGATGCCAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       127263 100 +   783054 TGAAG---ATA-----CTGAAGCAACAAATAA-----CTCCAGGAACGAGAGAGAacaatgt-----aaattttttcaaacatcacga-------aaaaactgagaaattt------gaaaataaaacaaa
i caePb3.Scfld02_62     C 0 I 48
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-1895.000000
s ce10.chrX               877622 10 + 17718866 ---TTTTTTTTTA-
s cb4.chrX              21291280 10 - 21540570 ---tacggttttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   619419 10 -  1162296 ---TAGTAATATA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     67058 14 -   118955 ATATAGCCTTTTCA
i caeSp111.Scaffold412  C 0 I 31
e caePb3.Scfld02_62       127363 48 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-3436.000000
s ce10.chrX               877632 16 + 17718866 AATGTGCAA--------------------------GGTTTC----------------T
s cb4.chrX              21291290 20 - 21540570 attgttttaaaagaa--------------------gGCT------------------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   619429 58 -  1162296 AACTTTTAGAAAGAACGTATAGCTGACTATTTCATGACTCCGATAGCCatagaaatgt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       127363 48 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67072 31 -   118955 I

a score=-7461.000000
s ce10.chrX               877648 33 + 17718866 AAGCGTGTTGGAAAAAAAAAACAAAGTGATCTA-----------------------------------------
s cb4.chrX              21291310 11 - 21540570 ----------GAGAA--------------TTCGGA---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   619487 50 -  1162296 ----------gaaaa--------------tgtgaataatACTCCTCTCACTAGTAGCAAAAAACCACTGAATTG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       127411 46 +   783054 ATATTTGCTCGAAAA--CAAATAAAGTTCTTTGGAAAATAGTGATTTC--------------------------
i caePb3.Scfld02_62     I 48 I 5
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67072 31 -   118955 I

a score=72981.000000
s ce10.chrX               877681 248 + 17718866 TTATATTTCAGTGCTTGGCTCCCAAAGGAACATTCGTGAAAACCTTCAACACTTCCGAAACAGCTTAGACAATACACGGGAAGGACAGACGGTTGTGAGCATTACAAAGAGCATATTTCCCTTCTTGGCGCTTTTCGCTGCAAATTTCGTGTTTGACCATTTGTATGAGATATTTCAATTCATCGTTGTATATCTTATCTTTGTTCAAGCTGATGTCATTGTTCAGAAAATGATGGCTGGAGGTAGGT
s cb4.chrX              21291321 240 - 21540570 --CCTTTTTAGTACTCGA---TCAACATCATTTTCGCCATGGATTGGAACACATCCGAAATCGATTAGAAA---CACAACAAGGACAATCAGTAATcacatttctcaaaaatgtgctTCCATTTCTTGCACTGTTTGTGGCAAAGCTAACCTATGATCATATGTAcgacattttccaatttgggGTTCTTTTTGTGGCGTTTTATTTGTCAAACCAAATCAACCAAAGAATTATGGAAGGAGGtttat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   619537 245 -  1162296 TCTCTTTTCAGTACTCGA---CCAACGCCAAATTCGAGAAGGATTCCAGCAGCTACGGAACACGTTCGATAACTCACGAGAAGGTCAAACACTTCTGAACATTATCAAAAATGTGCTTCCCTTTCTGACACTTTTTGCTGCCAAACTGATGTTCGACCACTTAAACGACATCTTTCAATTTGCTCTGCTCTTTGTCACATTTCTTCAAGCAGACTTTCTGGTTCAAAAAGTTATGTCTGGAGGTGAGT
i caeRem4.Crem_Contig24 C 0 I 232
s caeSp111.Scaffold412     67103 245 -   118955 ttttctttcagtccTTAA---TCAACGGAGTGTTCGCGAAGGACTGGAACAGTTCCGATTAAGTCTTGACAACACCCGTGAGGGACAGACATTCATCAGCATCGTCAAGAATGTGTTGCCATTTGTTGCCTTATTCGCCGCAAAGTTTATGTTCGACCATCTTGTGGATATCCTtgaattcttcattctctttgctgttttctttcaagcTGATATCatcgttcaaaaaattatgtctGGAGGTATGT
i caeSp111.Scaffold412  I 31 C 0
s caePb3.Scfld02_62       127462 244 +   783054 GCGATTTCCAGTACTTGG---CCAAAGAAGTGTACGCGAGGGTCTGGAGCAGTTTCGTTTGAGTTTGGACAACACGCGAGAAGGACAAACTTTCATCAGCATTCTCAAAAACATACTACCGTTTCTGGCGCTTTTTGGTGCCAAATTTATGTTTGACCATCTAACGGATATTCTGCAATTCTCACTTTTGTTTGTCACGTTCCTTCAGGCAGATGTCATTGTGCAAAGAACCATGTCAGGAGGTAAG-
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=20288.000000
s ce10.chrX               877929 220 + 17718866 ----------TGCCGGGAATAATTTTGACTGATAACAATCTAG-----TTTCAGGAATTGCGAACAAAATCTTTCAAGTTGTATACTTTTTTGGATACACTATTGTCACAGTTGTTTACTTGCGCAATTATTCACTGGATGACTTTGAGTTTTCGAACACATTTGGATTAAATATTTCGGTTGGTTATTTTTTTAAATATTGATGCACAAAAATAGTTCATTCGTAATGACAATT
s cb4.chrX              21291561 165 - 21540570 ttcaaagaaattgcTGAATTGTATTTG-----------TTTGA-----TTTCAGGATTCACGAACAAATTCTTCCAAATTATCTATTGCTTCGCATCGAGCATGATCACTGCTGTTTATCTCCAAAACTATTCGTTAGTGGATTTTGAGTTCTCAAACACTTTTGGATTAAATGTTTTGGT------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     67348 189 -   118955 ---TCacaattttgtattttgaatttgatttctaaaactttgaaatattttcaggcTTCACCAATAagtttctccaatttctgcACTTTTTTGGGTTCAGCATTCTTACGGCTGTTTACTTGCATAAATACTCTTTGGATGACTTCGAATTTTCTAACACGTTCGGATTGAACATCATGGTGAGAAGtcact-------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       127706 202 +   783054 ----AATGAATTTTCATGTTGAATCG------------TTACAcagttttccaggtttttccAACAAATTATTCCAAGTTGTATATTGTTTCGCGTTCAGCATGCTAACGGTTGTTTATCTACGTAATTACACATTGACGGATTTTGAGTTTGCGAACACTTTTGGTTTGAACATAATGGTAAGATTTTAACACGAATA-------ACAAAAATTGCATGTTTAT----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   619782 232 -  1162296 I

a score=-2111.000000
s ce10.chrX               878149 22 + 17718866 GGATGTCATG--AAAAAAGTCATG
s cb4.chrX              21291726 19 - 21540570 GA-----GTGtgaagaaaattgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   620014 24 -  1162296 gaattccatgtgaaaaagcttaag
i caeRem4.Crem_Contig24 I 232 C 0
s caePb3.Scfld02_62       127908  8 +   783054 --ACGCCATC--------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67537  0 -   118955 C

a score=-5881.000000
s ce10.chrX               878171  86 + 17718866 TCCTAAAAACAGTGGAATTTCAAGAATACATAAGT--GATG-------------------------------------CTCC---TAAATGAAATAGATACCTTGTCCAAAATATTTAAGGGTTGAGA
s caeRem4.Crem_Contig24   620038 113 -  1162296 -catatgaaaag------tttgagagctcataacttggctTGGAGAGACATTCAGTCGGTTTTGACTGTAGAAATGGACTCCGCGTAGTCGAAATTAA--------CCAAATTGTTTAGTCGTTGAGA
i caeRem4.Crem_Contig24 C 0 I 230
s caePb3.Scfld02_62       127916  69 +   783054 TCATTGAAGTTG------TTAGTGAGAATCCAGCt--gctt-------------atcagtttt---------------tttcatacagtttccatcaa----------aaactga-------------
i caePb3.Scfld02_62     C 0 I 27
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21291745   0 - 21540570 C
e caeSp111.Scaffold412     67537   0 -   118955 C

a score=0.000000
s ce10.chrX               878257 33 + 17718866 AAAATTAATTATTGCACTGACCACAACAAATGG
e caePb3.Scfld02_62       127985 27 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21291745  0 - 21540570 C
e caeSp111.Scaffold412     67537  0 -   118955 C
e caeRem4.Crem_Contig24   620151 230 -  1162296 I

a score=-13381.000000
s ce10.chrX               878290 113 + 17718866 ATTCCTAATCCAACTACATAAGTATGCTCTTGAAATTAATAAGTATTATACAATGACTAAATTATATGTTAAAATAAAAATGAATGCATGTTTCAACATTAAACAGAAAGATT----
s cb4.chrX              21291745  25 - 21540570 -----ctaatCAAAAAcac------------------------------------------------------------------------tcca-----------aaaaatt----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     67537  26 -   118955 ----atttttcatctgttC---------------------------------------------------------------------------------------AGTAGTCATTA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       128012  44 +   783054 ----ctttttcatcaattctcatactcttttta----------------------------------------------------------ttca-----------aataaacctat
i caePb3.Scfld02_62     I 27 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   620151 230 -  1162296 I

a score=194308.000000
s ce10.chrX               878403 746 + 17718866  
s cb4.chrX              21291770 697 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   620381 925 -  1162296  
i caeRem4.Crem_Contig24 I 230 C 0
s caeSp111.Scaffold412     67563 723 -   118955  
i caeSp111.Scaffold412  C 0 I 33
s caePb3.Scfld02_62       128056 700 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-561.000000
s ce10.chrX               879149 2 + 17718866 tt-
s cb4.chrX              21292467 2 - 21540570 tt-
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig24   621306 2 -  1162296 TT-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       128756 2 +   783054 -TG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     68286 33 -   118955 I

a score=575.000000
s ce10.chrX               879151 3 + 17718866 ttt
s caeRem4.Crem_Contig24   621308 3 -  1162296 TCT
i caeRem4.Crem_Contig24 C 0 I 158
s caePb3.Scfld02_62       128758 3 +   783054 TTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469 34 - 21540570 I
e caeSp111.Scaffold412     68286 33 -   118955 I

a score=237.000000
s ce10.chrX               879154 11 + 17718866 ttttttaaata
s caePb3.Scfld02_62       128761 11 +   783054 ATAATCAAATA
i caePb3.Scfld02_62     C 0 I 91
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469 34 - 21540570 I
e caeSp111.Scaffold412     68286 33 -   118955 I
e caeRem4.Crem_Contig24   621311 158 -  1162296 I

a score=0.000000
s ce10.chrX               879165 416 + 17718866 aatgtttttgaaaaaaaaaCAGTTGATTAGTAAAAACGGGGTTTTTAAAAGAGCCACGTGAGTCTGATAAAAATGCTTGAAATGTAGAATTGTAAATATTGTCGTTCATACTTTCACAGCGGATTTTCGCAAAATTAGAATCTGTTAATTCAGCCAACATATCTGAACCTTTTGTTCAGACTAAAACAATTGGCAGCCTATGCCCACTTTTTTCTGATTAACTATAAAGCACTCGTGTAATGCCTTTCTTCCGGAGAATATATGGGCAGCTTCACGAGAAAGCATGGATTGTGTAGGCATGTAGGTAGGCATTTCGTATGCCCAAAAAAATCAGGCTCAAACAATGTCATGTCAAAACGGTTAGCATCTGATTTTCAAAATTTTGCTCAAATTGTGAAAAACAACTGTTCAATAAT
e caePb3.Scfld02_62       128772  91 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469  34 - 21540570 I
e caeSp111.Scaffold412     68286  33 -   118955 I
e caeRem4.Crem_Contig24   621311 158 -  1162296 I

a score=91.000000
s ce10.chrX               879581 1 + 17718866 T
s caeSp111.Scaffold412     68319 1 -   118955 t
i caeSp111.Scaffold412  I 33 C 0
e caePb3.Scfld02_62       128772 91 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469 34 - 21540570 I
e caeRem4.Crem_Contig24   621311 158 -  1162296 I

a score=391.000000
s ce10.chrX               879582 3 + 17718866 TTA
s caeSp111.Scaffold412     68320 3 -   118955 ttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       128863 3 +   783054 TTA
i caePb3.Scfld02_62     I 91 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469 34 - 21540570 I
e caeRem4.Crem_Contig24   621311 158 -  1162296 I

a score=546.000000
s ce10.chrX               879585 1 + 17718866 T
s caeRem4.Crem_Contig24   621469 1 -  1162296 T
i caeRem4.Crem_Contig24 I 158 C 0
s caeSp111.Scaffold412     68323 1 -   118955 t
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       128866 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292469 34 - 21540570 I

a score=5052.000000
s ce10.chrX               879586 218 + 17718866 TTCAGGATAACGATTGGAAAAACGGCGGCACCAGTCTTGCACTTCGCATGTTCTA-----AC----------GCAGCTTCT----------TAACCTA--------------------------TTTTGTAA---AAATTGTATACCTTT----------TTGTT---TCTTCTCCCAACCAAATTCCGTCCAACATGTGCTCAATCTTGGTGGCAGTAACTATCTGC------------GCCAACTATCGA----ATCGCT-TAATTGTGTGAAGTCGGGTG---AAAA-------TGTCATTCAATACAT
s cb4.chrX              21292503 228 - 21540570 TTCAGGATAACGACTGGAAGAATGGAGAAACTAGCAAATGGATCCGAGCCTTCTA-----AT----------CTACTCTAT-------GTATATGCga--------------------------ctcctt-----cttttttttcatttctcgaACCCGTTTGATAGGTTTTTG---AACTAGTTTGTTCAAAGTTGGTGC-------------------CAATATGTCAAACAACATT-GAAATGTATCAT----GGTGTT-GTTGTTTGTGAATTCGGGTT---AATCAATATTTCGTCATTCTATATAT
i cb4.chrX              I 34 I 419
s caeRem4.Crem_Contig24   621470 222 -  1162296 TCCAGGACAACGAATGGAAGAACGGAGGAACAAGCTACGCGATTCGCATGTTCTG-----ATTCCAATGACATCATCTTAT-------CTACATACAC--------------------------CCCCGTGAAGATATTTGTGTAATtttaaata-----ttgat---tttttg-----ctcaatCCCTCCCACTAGGTGC-------------------CTATTTCT---GCTTCGTTAGCAATCTACCGT----TCTgta-ct--tttttgaatccgggtt---AACA-------CGTCATTCAACatat
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold412     68324 213 -   118955 ttcaggataaCGAATGGAAAAACGGAGGAACAAGTCTTGCTCTTAGAATGTTCTAAAACCAC----------CGTCTCTTT--GGTTCTCACATCTCA--------------------------CCCCGTG----AATTTGTATCATACT----------TTTGC---TTTTCT-----CAAA-----CGTTAATAGGTGC-------------------CAGGCTGC-------AATCGGCAACTCATCGTcttattcgat-ttttttttgtgatccGGGTCTCAAAAA-------TGTCATTCAACATAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       128867 236 +   783054 TCCAGGACAACGAATGGAAAAACGGAGGAACAAGTCTAGCCCTTCGAATGtttta-----ac----------tgattttttccgTATCACACATTTTGAATGTGGCGATTCCATTTAGAACCATCACTGTA----AATTTTTGCCATATT----------TGAAC---tgttcc-----ataatttttttttagtcgg-----------------------AAGTTGT-------AGGTATCAATGCGTCAT-TAATtcattatttgttttgaaagtcgGGTA-CAAACA-------TGTCATTCAACATAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-3230.000000
s ce10.chrX               879804 37 + 17718866 TTTATATTGTAGTTTTTAGTTTTTGTA-TGATGTA-TTT----
s caeRem4.Crem_Contig24   621700 39 -  1162296 ttttcaaggt-tgtttttatct---tatttttgtgatatattt
i caeRem4.Crem_Contig24 I 8 I 729
s caeSp111.Scaffold412     68537 26 -   118955 ------------CTATTTGTGTTTCTA-TTTTGTGAttt----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       129103 22 +   783054 ------------CTTTTTGTCT---TA-TGGTGTG-TCT----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292731 419 - 21540570 I

a score=-703.000000
s ce10.chrX               879841  5 + 17718866 ATTTT-------------
s caeSp111.Scaffold412     68563 18 -   118955 acttttgaattttaattt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       129125  5 +   783054 GTTTT-------------
i caePb3.Scfld02_62     C 0 I 257
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292731 419 - 21540570 I
e caeRem4.Crem_Contig24   621739 729 -  1162296 I

a score=382.000000
s ce10.chrX               879846 4 + 17718866 GTGA
s caeSp111.Scaffold412     68581 4 -   118955 gtgA
i caeSp111.Scaffold412  C 0 I 140
e caePb3.Scfld02_62       129130 257 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292731 419 - 21540570 I
e caeRem4.Crem_Contig24   621739 729 -  1162296 I

a score=0.000000
s ce10.chrX               879850 693 + 17718866  
e caePb3.Scfld02_62       129130 257 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21292731 419 - 21540570 I
e caeSp111.Scaffold412     68585 140 -   118955 I
e caeRem4.Crem_Contig24   621739 729 -  1162296 I

a score=91.000000
s ce10.chrX               880543 1 + 17718866 T
s cb4.chrX              21293150 1 - 21540570 T
i cb4.chrX              I 419 C 0
e caePb3.Scfld02_62       129130 257 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     68585 140 -   118955 I
e caeRem4.Crem_Contig24   621739 729 -  1162296 I

a score=-745.000000
s ce10.chrX               880544 10 + 17718866 CACA----------CGTATT
s cb4.chrX              21293151 10 - 21540570 TACA----------TTCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   622468 20 -  1162296 CAcatgaatttcatttttat
i caeRem4.Crem_Contig24 I 729 C 0
e caePb3.Scfld02_62       129130 257 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     68585 140 -   118955 I

a score=-1035.000000
s ce10.chrX               880554 8 + 17718866 TTATTCAG
s cb4.chrX              21293161 8 - 21540570 CCGTTTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   622488 8 -  1162296 atgtCTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       129387 7 +   783054 ttcttca-
i caePb3.Scfld02_62     I 257 I 4
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     68585 140 -   118955 I

a score=12379.000000
s ce10.chrX               880562 107 + 17718866 ---CTCTCCTTCCCTTTTTATTATTGCTCAACCGCA--GCTCAATCTCCATGACAACCGTGTGCCGCCGCC--------------GCCAGCGAGATTGTTGTCTTCG-CTTACCCTTATTCTTTCCG-
s cb4.chrX              21293169 120 - 21540570 CTGCTCTCT-CCGT--TTTGTTATTACGA----ACTCCCTTCGATCGTCATGACAACGATGTGCCGCCACTCTTCACCTGCTCAGCAATACGAGATTGCTGTCCTCAACACACCTTTATTCTACTCG-
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig24   622496 110 -  1162296 CCACTCTCCGCCTC--TTTGTTATTACGGGGGCGCTCCGCTCGGTTCCTATGGCAACAATGTGCCGCCGT---------------CAAAACGAGATTGCTGTCCTTAGttccctctccctctctttc-
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold412     68725 114 -   118955 ---ctctctttctttctttcttattaAGAAGCAGCAATACTCGGTTTCTATGGCAACATTGAGCCGCTGCCTCGCG---------GCCAGCGGGATTTTTGTTCTTA--CTAACCCTCTTTATTTCCG
i caeSp111.Scaffold412  I 140 C 0
s caePb3.Scfld02_62       129398 114 +   783054 ---ctttctgtctttatttccttctcttcAACGGCATCATTCCGTTGCTATGACAATATTGAGCAACGGCAGCGTC---------AACGGAAATGTTGTTGTTCTTG--CCAATCTCATTCTTTTCCG
i caePb3.Scfld02_62     I 4 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-5997.000000
s ce10.chrX               880669 67 + 17718866 GTTCGCTCTCAA-C------AAGCAAACTAGTTTGAAATTTGCTCTGGTTTTTGTT-TTTTATTTTT------ACATCGTC-----------
s caeRem4.Crem_Contig24   622613 76 -  1162296 gTGTGCGCACAT-C----GAGAGCTAACTGGTTCGAAGTCT-------TGTTaact-ctttctcatttcttggATTTTCTT---ACACTTCT
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold412     68839 63 -   118955 GTTTGCTCACGCGCGCCGTGAAT--------TTCCAA-------------TTACTTCTCTTCTTGTT------ATTTCCTTTGTTCACTG--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       129512 59 +   783054 GTGTGCTCACTCGC----TAAACCAAACTGGTTtaaa-------------tttcat-tcttttcgtt------ATAACCTT-------TT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21293289 58 - 21540570 I

a score=105878.000000
s ce10.chrX               880736 359 + 17718866 ATGGCTCATTTGAATCACGCCTACCTAGA---------AAACCCTCAAAATGGAGGTCAGGATCCACAGCGAAGAGCACTGAACTCGCTGTCACCAACATTTTTCATAAAGCCCAAAACCACAGGTCTTATCAGTCTTTTCATACAAACAGTGATTCTCATCATAAGTGCAAGTATATCTTTATTCTTTTTTTACCACGTTGGAGGCTATGAGTATACCCATTGGAATGAGAATTCTACAATTTTGGAACCAATCAATCATAACATCAACAAGATTCCTTT---------------GCCGATG---------AGTGAAGGCGCCAATTCACTGGTTTCAACTGTGTCGAGAAAATTGGATTTTCTGGAAATTCC-GTACTTGGTAAGTCAAAT-----
s cb4.chrX              21293347 383 - 21540570 ATGGCCCATATCAACCATGCCTACCTTGACACTTCAGGAGGTTTCAATGGTGCT---GACGAGTCACAGAGCAGACGTTTGAACTCTTTGTCTCCAACGTTTTTCATAAGTCCCAAAACAACTGGTTTAGCCAGTCTATTCATACAAGTCGTTTTGATAATTGTCAGTGCGACCACCAGCATGTTCTTCTTCTATCATGTCGGAGGTTATGAGTACACACAGTGGAATGAAAATTCTACAATTCTGGAACCAATTAATCACAAC---AACAGAAATCCTTTGAAAGAATTCTTGGTTTCGACTATCACACCAAACGTGAGCG---ATTCACTGGTTTCAACTGTCAACCGCTCACTAGAC-TTCTCGGTGGCTCATTTTTTAGTAA-----GTTCGTG
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig24   622689 391 -  1162296 ATGGCCCATATAAACCATGCGTATTCGGATACTTCCGGTAGCCATCACAATGGA---CAGGATTCTCATAGAAGAGGTCTAAACTCACTCTCTCCAACTTTCTTCATCCGACCGAAAACCACCGGACTAGTTAGTCTGTTCATCCAAACGGTTTTATTGATTGTCAGTGCCACTACATCACTATTCTTTTTCTATCATGTTGGTGGTTATGAATACACACATTGGAACGAGAACTCTACTATTCTGGAGCCCATAAATCATAACATGAATCGTAACTCGGCCGGTGAAATGGTAACCCCAATGGTCTCAAATGATGGAAGTG---ATTCCTTGGTATCAACTGCTGAGAGAAAATTGGACTTTCTCGAGAGATC-CTATCTGGTGAGTGGTGTTTGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     68902 357 -   118955 ATGGCTCATATCAACCACGCATATTCCGAGTCTACcgaaaatcatcaaaacgGA---CA------TAACAGAAGAGCACTGAACTCCTTATctcccacttttttcatccaaCCAAAAACTACTGGTCTCGTTAGTCTCTTCATTCAAGTCGTTTTGATAATTGTCAGTGCAACCACttcattgttctttttttatcaCGTCGGAGGATATGAATACACACATTGGAATGAAAACTCGACCATTTTGGAACCAATCAACCACAATATCAATCGCGACAAACTTAG-----CGCTGG-GTCAATG---------GAAGAAAGTG---ATTCTTTGGTATCTACTGTACGAAGACGACTGGATTTTC------TTCC-ATATTTGGTAA--TGGGC-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       129571 374 +   783054 ATGGCTCATGTAAACCACGCATTTTCGGATTCTCC---GAATTCCCGAGGTGAA---CGAGATTCTCACAGACCGGGACTAAACTCACTATCTAACACTCTATTTGTAAAACCTAAACATACTGGACTTCTTAGTATTTTCATACAAGCTATTTTGTTTATTGTGAGTTTActattcacattttttctattctatcATGTTGGTGGATACGAATATACACATTGGAACGAAAACTCAACGATTCTGGAGCCAATCAGTCATAACATCAATAAGCAGACACTTATGAAACCATTGACGCCTATT---------GATGGGAGTG---ACTCACTGGTGTCGACCAAAGAACGGAAGCTGGACTTTTCGGATATGAC-TTATTTGGTAAATTGAGT-----
i caePb3.Scfld02_62     C 0 I 13
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-5310.000000
s ce10.chrX               881095 34 + 17718866 -CAAAAACCATTAACATCAGG-TGACTGAATTCTTA
s cb4.chrX              21293730 27 - 21540570 TAATAGATT----TCATTGAGTTGTACGATT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623080 20 -  1162296 CAACA----------Actgaa-agtttgaat-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     69259 32 -   118955 -TATAAgtta--aactttgaa-aaactgaattttta
i caeSp111.Scaffold412  C 0 T 42893
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-706.000000
s ce10.chrX               881129 58 + 17718866 AAAAACTAATTTGAATAACCAAAATTGCATGAGATT-TTGTTTGATTGCACTTACTACA-----
s cb4.chrX              21293757 49 - 21540570 ---------TTTGATCAAGTATAA-TTTATTTACTGCCTGTTTATTTGAACTCATTTCA-----
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig24   623100 52 -  1162296 ---------attGAACAACCAAAACTTTGTGTAATTGGTATTTCCTT---TGCATTTCGCAATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69291 42893 -   118955 T

a score=-373.000000
s ce10.chrX               881187 22 + 17718866 TCACGCTCCCAACTGG------AAAAGC
s caeRem4.Crem_Contig24   623152 28 -  1162296 TCATGTGCCTGCCTTATGTGTCACattc
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21293806 42 - 21540570 I
e caeSp111.Scaffold412     69291 42893 -   118955 T

a score=152.000000
s ce10.chrX               881209 29 + 17718866 AATTTCCGAAAAAC----CGCATT-------------TTTTT-GATT
s cb4.chrX              21293848 46 - 21540570 AATATCTTTAAAACCTCTAACGTTTAATCTATGTTGGCTTTG-GATT
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig24   623180 41 -  1162296 atcatctgaaaaac----aaagtt--attagttttgtttttgtgatt
i caeRem4.Crem_Contig24 C 0 I 35
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69291 42893 -   118955 T

a score=-256.000000
s ce10.chrX               881238 23 + 17718866 AATGGGAA-------------------AAGTTGTAGTGATAT
s cb4.chrX              21293894 42 - 21540570 GAtaacaattttctcaaattttttgtgaggCCGTGatgaaat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69291 42893 -   118955 T
e caeRem4.Crem_Contig24   623221 35 -  1162296 I

a score=-45.000000
s ce10.chrX               881261 20 + 17718866 --TAAAACAAAAGTAATACTTA
s cb4.chrX              21293936 22 - 21540570 aacaaaaaagttctttGACGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623256 20 -  1162296 --Catgacaaattttcaactaa
i caeRem4.Crem_Contig24 I 35 C 0
e caePb3.Scfld02_62       129945 13 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69291 42893 -   118955 T

a score=817.000000
s ce10.chrX               881281 6 + 17718866 TCTCAT
s cb4.chrX              21293958 6 - 21540570 TTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623276 6 -  1162296 tctcat
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       129958 6 +   783054 TTTTGT
i caePb3.Scfld02_62     I 13 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69291 42893 -   118955 T

a score=31434.000000
s ce10.chrX               881287 159 + 17718866 -------------------------------AGTAAATGCTTTATTTAAAAATTGCAGTACAATGATAGTGC---CGATGTGGAGACTGTTAATCTTCTTCTGGATTCATCCGGTGTTCCAGACATTTTCATGGAAAACGCATCGTTCGGGATTGAACAAGTACCAATGACAACAGTGATAATTGGAGTGAGT
s cb4.chrX              21293964 177 - 21540570 CCTTCA-TACCAAAAGAAGCTCTATTTAACAGATTAACA---TATT-----TTTACAGTACAATGATAG------TGACGTGGAAACTTACAAACTCATCCTGGAAACTGACAACGGACAAAgtatggaaattgaaaatgcaTCTTTTGGAATTGAACAAGTTCCGATGACAAATTTTAACATTGGAGTAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623282 151 -  1162296 ttttcagtacc-------------------------------tATT-----ATTTCAGTACAACGATAG------TGATGGGGAAACTGTCAATTTATTGTTCGATCCCGAGGATAGCCCGAACTCTTTCATTGAGAACGCATCTTTTGGTATTGAACAAGTTCCGTTGACCACTGTTATTATTGGGGTATGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     53809 155 +   118955 -------------------------------agtatatg---tatt----attttcagtataACAACGAAACTTTTGACGCTGAAACTGTTCAACTTTATTTGGATTCTGCTGGCGGACCTAGCGGATTTATTGAAAACGCTTCTTTTGGGATAGAACAAGTACCGTTGACTACAGTAATTATCGGGGTAACT
i caeSp111.Scaffold412  I 4702 C 0
s caePb3.Scfld02_62       129964 154 +   783054 -------------------------------ATTAAATG---tgtt--aaattttcagtacaacaATGATTCCTTCGACATTGAAACGGTCagtttatttttggattctgcT---CAGCCTgacgagtttttcaaaaacgacaCATTTGGAATCGAGCAGGTTCCTCTGACAACCGTGATTATAGGGGTAAAT
i caePb3.Scfld02_62     C 0 I 5906
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=311.000000
s ce10.chrX               881446 2 + 17718866 TT
s caeRem4.Crem_Contig24   623433 2 -  1162296 CT
i caeRem4.Crem_Contig24 C 0 I 38
s caeSp111.Scaffold412     53964 2 +   118955 CT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294141 0 - 21540570 C

a score=-3227.000000
s ce10.chrX               881448 37 + 17718866 TGAGAGAGGAAACTGAATTTTGAAGTG-TCAAAGCGCC----
s cb4.chrX              21294141 36 - 21540570 ------ACAAATAGAAACACTGAAATGTTATTCGTTTTCATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     53966 31 +   118955 --TCTAATTAATTTCAATACCGA-----CCTTAGTTTC----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   623435 38 -  1162296 I

a score=88136.000000
s ce10.chrX               881485 401 + 17718866 TTTCAGGACATTGAATTTGACTGGCTGGAAGTCATTCGGATATCCACAATCGTTTATCTGGTCATAATTTGCTTTTGGTTTGGTAGTGGAGTTTTCTTCATATTCACAATTCGGTGTGAAGTGCTAGATACTGCAATTTTCAATACAACCATATTGATTTTGGTTGTCTTGTTTCAAATTGCACACGCGGGACTTGTCACTTCGTTAATATTTTTCCAGGTAA-----------TAACAGCT--ATATGAAAACTATATAGATAACAT---TTTCAGAGAGAAATGAGTTGGAGAACGCTGTCAATAACAATAGGTACTATTGTTATTCTGTTCTGTTGCGCGTTCTTAGGATTTGTCTGCATAACACTCAACTGTGGATGGGTGAAATACATTGACTATATGCACGGAAAGAAGAA
s cb4.chrX              21294177 405 - 21540570 TTGCAGGACACTGATATTGACTGGTTGGAAGTGATTCGGATATCAACGCTTGTTTACGTTGTAATCTGCGCTTTTTGGGTGATATCGGGATTGTTGTTTATTTGTACGATCAAATGCGAAATTTTGGATACAGTCATTTTCAACACCACTGTACTCATCTTAGTTGTCCTGTTTCAGTTTGTTCATTCCGGTTTGATAGCGGCATTGATATTTTTACAGGTAAGTGCTTTTTTATCTACAAT--GGGtaattggaaaataa----------tttcagagagAAATGAGCTGGCGAACGCTTTTAATCACTATTATGTCTATTATTATCATTTTCTGTAGTGCAATTCTTGGATCAGCATGCATCAAGTTGAACTTTGGATGGATCAAGTACATTGATCACATGCACGGAACTAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623473 402 -  1162296 TTTAAGGATGTCGAATTCGACTGGTTAGAAGTGATCCGAATTTCCACCCTTGTGTATCTTGCCATATGCGCTGCTTGGGTGATCTCAGGCCTTCTGTTCATTTGCACAATTAGAAAGGAGCTATTGGACACCGCGGTTCTCAACACTACTATTCTTATTTTGGTGGTCCTATTTGAAGTTGCTCATGCGGGACTTGTGACGTCTCTGTTATTCTTTCAGGT-------------TTCGAAAT--GGAGGGTAGtatcatacatatttttgttttcagagagaaatgagTTGGAGAACATTAGCAATCACAATTGGATCAGTTATCATTTTGTTCTGCTGCGCTTTCCTTGGTTTCGTATGTGTTTCGTTGAACTGCGGTTGGATAAAGTACATTGATTACATGCACGGAAAGAAAAC
i caeRem4.Crem_Contig24 I 38 C 0
s caeSp111.Scaffold412     53997 405 +   118955 -TCCAGGACGTGGAATTCGATTGGTTAGAATTAATCCGAATATCTACTCTGGTTTATATTCTAATGTGCGCGTTTTGGACtgtttctggaatttttttcatctgcaCAATTCGATGCGAAATATTGGATAGCGTCATCTTGAATACGTTTATCCTCATACTCGTGGTCCTATTCCAAATCATTCATGCTTTGTTAGTTACGtcactcattttcttccaggtaaacgt-------tcaaaaatcaagataACTATTGCATATATGAAA----TTTTAGAGAGAAATGAGTTGGAGAACTCTACTTATAACCATTGGCTCtattgtcatcattttttgctgCGCTTTTCTTGGATTTGTATGCATCTCGTTGAACTGTGGATGGGTGAAATACGTTGACTACATGcacggaaagaaaaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=873.000000
s ce10.chrX               881886 3 + 17718866 GGT
s cb4.chrX              21294582 3 - 21540570 GGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623875 3 -  1162296 GGT
i caeRem4.Crem_Contig24 C 0 I 25
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     54402 0 +   118955 C

a score=119.000000
s ce10.chrX               881889 5 + 17718866 ATGTT
s cb4.chrX              21294585 5 - 21540570 TTATT
i cb4.chrX              C 0 I 35
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     54402 0 +   118955 C
e caeRem4.Crem_Contig24   623878 25 -  1162296 I

a score=0.000000
s ce10.chrX               881894 523 + 17718866  
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294590  35 - 21540570 I
e caeSp111.Scaffold412     54402   0 +   118955 C
e caeRem4.Crem_Contig24   623878  25 -  1162296 I

a score=319.000000
s ce10.chrX               882417 52 + 17718866 AAACTTCATACTAGAGAAAAAAAGTTCACATGCAAAACATCCAATACCTTAC
s caeRem4.Crem_Contig24   623903 37 -  1162296 AAAGTTCAAACTAGAAAAG------TTGCATG---AACATCTCA------AG
i caeRem4.Crem_Contig24 I 25 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294590 35 - 21540570 I
e caeSp111.Scaffold412     54402  0 +   118955 C

a score=1732.000000
s ce10.chrX               882469 8 + 17718866 TGTTTACA
s cb4.chrX              21294625 8 - 21540570 TGTTTACA
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig24   623940 8 -  1162296 TATTTGCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     54402 0 +   118955 C

a score=12761.000000
s ce10.chrX               882477 139 + 17718866 GTGCTCTATTTGCTCATTGTTCTCCCTTTGTTGCGGTAAA---AAAGAGCCATTGGAAGCGGCAACT---AGCAATGGAA-CTGCACCGACAAATACCAGGCCGTATGAGGATGATGTGCCGCTGGATCGATTCGATGCGTTCTAA
s cb4.chrX              21294633 130 - 21540570 GTGT---------CACATGTTTTGCTGT------GGAAGATCTAATGAGCCAATAGATAATGGTCATGCAGAACCTCGAG-AGATACCAGTTAATGCTGGACAATATGAAAATGACGTCCCATTGGATCGTTTCGATGCATTTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   623948 139 -  1162296 GTGTGCTATTTGCTGCTTGTTCCGCTGT---TGCGGCAAATCGAATGAGTCCGCGGAAGACGGTGTCGTAGGAAACGGAG----CTCCCACCAATGCTCGTCAATACGAGAATGACGTGCAATTAGACCGTTTCGATGCATTCTGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     54402 130 +   118955 gtgcaCAATTTGTTCTCTATTCAACCTG---TGTGGAAAATCT---------GCAAGAGATGCGACCCCAAGAAATGGAACAGGACCCCAACAA----GGTCAATACGAGAATGATGTACCTTTGGATCGGTTTGACGCTTTCTAA
i caeSp111.Scaffold412  C 0 I 15
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=822.000000
s ce10.chrX               882616 5 + 17718866 TTGTT
s cb4.chrX              21294763 5 - 21540570 TTCTT
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig24   624087 5 -  1162296 TTTTT
i caeRem4.Crem_Contig24 C 0 I 10
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     54532 15 +   118955 I

a score=0.000000
s ce10.chrX               882621 330 + 17718866 TTTCTTGCTGTACACTAAAACTTGGGTAGAAAATCATATTGCAAATTTTCTCCGAATTTAATCAATTTTGGGCACTTAGTGTTTTTTTTCAAATATGATCAATCGATAATGTGTAAGCTGAAAGTCAAGTTCTCTGTCATGAAGTATATAAAAAAAAGTAAAAAATAATCTGATATCTCAAGTGTACCGTAGTGCTCACTTTTTTCTCAAAAAATCTTACAAATTTTTCAAGCTTTGAAGCTTTCTATCTTTTTTGTAATAATCTTTTACATCATTTTTTCAAAAATCCTAATTAACCCATATTCATCAATGTTTAATTAACCAAAAGAA
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294768  31 - 21540570 I
e caeSp111.Scaffold412     54532  15 +   118955 I
e caeRem4.Crem_Contig24   624092  10 -  1162296 I

a score=471.000000
s ce10.chrX               882951 9 + 17718866 AAGTCACGA
s caeSp111.Scaffold412     54547 9 +   118955 AAAccacaa
i caeSp111.Scaffold412  I 15 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294768 31 - 21540570 I
e caeRem4.Crem_Contig24   624092 10 -  1162296 I

a score=627.000000
s ce10.chrX               882960 19 + 17718866 TTTATTATTATTTTCTCTT
s caeRem4.Crem_Contig24   624102 19 -  1162296 TTCTTTATTAATCTCTCTC
i caeRem4.Crem_Contig24 I 10 I 2
s caeSp111.Scaffold412     54556 15 +   118955 -tttttatttactATT---
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294768 31 - 21540570 I

a score=13327.000000
s ce10.chrX               882979  95 + 17718866 ACTTGACATGATTGATTCGACATATGACAATTTGCACTCAATAAGTACATATTTCTCAC-----------------------AATAATACTTGGAAC--TGAAAGGCTTTTGTAAATAAA
s cb4.chrX              21294799 105 - 21540570 ATTTGACATGATTGACTGGACATATGACATATGACA--------------ATTTCGCTCATTCTCTGACATAGGAAGTTGTAAATAATACTTGGTGATGTGACAAGC-GTTGtgaataaa
i cb4.chrX              I 31 I 97
s caeRem4.Crem_Contig24   624123  96 -  1162296 ACTTGACATGATTGACTGGACATATGACATATGACA-------------TTTTTTGCACATTCT------TCGTAAACTG--AATAATACTTGACGC--tgaaagac-tttgaaaataaa
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold412     54571  75 +   118955 -GCTACCATGATTGACTGGAAATTTGATATATGACA---------------TTTTGCACTT-----------------------TAATACTTGA-----TGAAAGAC-gctcaaaataaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-1514.000000
s ce10.chrX               883074 37 + 17718866 TATTTGATACATGAAAAAGTGGTTATTGATCAATAAA
s caeRem4.Crem_Contig24   624219 21 -  1162296 ---taaataaatgaataac----------tcaat---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     54646 12 +   118955 -------taaatgattaaa------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21294904 97 - 21540570 I

a score=61237.000000
s ce10.chrX               883111 248 + 17718866 TTAAAATTGAGA-------ATTGTAAAGCAACAGTTTTGAGAACAT-TTTGAA--GACAGAAA-----AAAAAACAAGGTAAACATAATAAAATTAGATAAAATGAATCAT----------------TTAAAGTTGTAGAACACTTTGAAAATCTGTGGTTTCATCGATATAGTCCGGTGCAAAGCCTCGTGTATCACAAATTGCGACTCTCATATTATCAATGGCAATTGCTGCTCTACTTTCGGATTTTTCACTGCTGTGAGCCACCAAGTAGAACT
s cb4.chrX              21295001 263 - 21540570 ttcaaatagaCAATAGTATGATGTAAAGCAACAA-TTTGAGAACAT-TGAtag--aaatgaac-----aaaaaacaata-----atatgGAA--TATATAACAGGAAATATTGAGAACTCAAGAGTTTCAAAGTTGCAggacactttgaaaatctgttgTTTCATCGATATAGTCTGGTGCAAATCCTCTGGTATCACAAATTGCGACTCGCATATTGTCGATTGCTATTGCGGCTCTGCTCTCCGATTTTTCGCTACTGTGAGCAACAAGATAGAACT
i cb4.chrX              I 97 C 0
s caeRem4.Crem_Contig24   624240 245 -  1162296 ttgaaaaagaaa--------aagtaaagcaacaa-tttgagaacat-tgggagaaaaatgaaaagtagaaagaacaaaa-----acaatgaa--t------tatgAATTATTTGGA-----------CTAAAGTGAGAGAACACTCTGGAAGTCGGTTGTCTCATCGATATAATCCGGTGCAAATCCTCTTGTATCACAAATGGCGACACGCATGTTGTCAATTGCTATAGCTGCTCGACTATCAGACTTCTCACTGCTATGAGCCACAAGATAGAACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     54658 221 +   118955 ----------------taaaaagtaaAGCAACAG-TTTGAGAACatgtgaaag--aa-----------gaaaaacaaga-----aaaacaa----------tataaaTTAATGG-------------TTAAAGTTGTAAAACACTCTGGAAATCGGTAGTTTCGTCGATATAATCTGGGGCGAATCCCCGAGTATCACAAATCGCAACTCTCATGTTGTCGATTGCGATCGCTGCTCTGCTATCTGATTTCTCGCTACTATGAGCCACCAGATAAaact
i caeSp111.Scaffold412  C 0 I 31
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=211.000000
s ce10.chrX               883359 5 + 17718866 ACAAA
s cb4.chrX              21295264 5 - 21540570 GTAAA
i cb4.chrX              C 0 I 37
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     54879 31 +   118955 I
e caeRem4.Crem_Contig24   624485 0 -  1162296 C

a score=0.000000
s ce10.chrX               883364 553 + 17718866  
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295269  37 - 21540570 I
e caeSp111.Scaffold412     54879  31 +   118955 I
e caeRem4.Crem_Contig24   624485   0 -  1162296 C

a score=206.000000
s ce10.chrX               883917 49 + 17718866 AAAATTTCATAAGCTTATTGATAAATGCTGAAAACTAAGTCTATCTCCT
s caeRem4.Crem_Contig24   624485 44 -  1162296 AAAATGTTAAGAGTTTATAGA-AAATGTaaagaaaatagataatt----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295269 37 - 21540570 I
e caeSp111.Scaffold412     54879 31 +   118955 I

a score=-729.000000
s ce10.chrX               883966 4 + 17718866 AAAA--
s caeRem4.Crem_Contig24   624529 2 -  1162296 --aG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     54910 4 +   118955 --AGAA
i caeSp111.Scaffold412  I 31 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295269 37 - 21540570 I

a score=166431.000000
s ce10.chrX               883970 578 + 17718866  
s cb4.chrX              21295306 572 - 21540570  
i cb4.chrX              I 37 I 53
s caeRem4.Crem_Contig24   624531 590 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     54914 530 +   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=273.000000
s ce10.chrX               884548 1 + 17718866 T
s caeRem4.Crem_Contig24   625121 1 -  1162296 t
i caeRem4.Crem_Contig24 C 0 I 24
s caeSp111.Scaffold412     55444 1 +   118955 T
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295878 53 - 21540570 I

a score=-600.000000
s ce10.chrX               884549 25 + 17718866 -----TTTTTAACGACAAAAATAATCCTCA
s caeSp111.Scaffold412     55445 26 +   118955 ATGACTTCATAAGCTTCAGATTAAGC----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295878 53 - 21540570 I
e caeRem4.Crem_Contig24   625122 24 -  1162296 I

a score=0.000000
s ce10.chrX               884574 2 + 17718866 CT
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21295878 53 - 21540570 I
e caeSp111.Scaffold412     55471 0 +   118955 C
e caeRem4.Crem_Contig24   625122 24 -  1162296 I

a score=23016.000000
s ce10.chrX               884576 76 + 17718866 CTACCTCGGTTTTGAAGTTTGCGTGTAAACTTCTTCAGGGAACACAGGTGCAAATGTTGTGAATATTCGTCT--GAAA
s cb4.chrX              21295931 78 - 21540570 TTACCTCGGCTTCGGAGATTGTGTGAAAGCTTCCTCTGGGTAGACAGGCGCAAACGTTGTCAGCACTTTTCTACGAAA
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig24   625146 76 -  1162296 TCACCTTGGTTTTGTTGGGTGTGTATATGCCTCCTCTGGGTAGACAGGTGCAAATGTTGTgaaaattcttct--gaaa
i caeRem4.Crem_Contig24 I 24 I 38
s caeSp111.Scaffold412     55471 76 +   118955 TTACCTCGATCTTGGGGCTTGAGTATATGCTTCTTCCGGATAAACAGGTGCAAAAGTTGTCAGAACTCGTCT--GGAA
i caeSp111.Scaffold412  C 0 I 68
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=241.000000
s ce10.chrX               884652 5 + 17718866 TTATA
s cb4.chrX              21296009 5 - 21540570 ATATA
i cb4.chrX              C 0 I 128
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     55547 68 +   118955 I
e caeRem4.Crem_Contig24   625222 38 -  1162296 I

a score=0.000000
s ce10.chrX               884657 861 + 17718866  
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21296014 128 - 21540570 I
e caeSp111.Scaffold412     55547  68 +   118955 I
e caeRem4.Crem_Contig24   625222  38 -  1162296 I

a score=91.000000
s ce10.chrX               885518 1 + 17718866 A
s caeSp111.Scaffold412     55615 1 +   118955 A
i caeSp111.Scaffold412  I 68 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21296014 128 - 21540570 I
e caeRem4.Crem_Contig24   625222 38 -  1162296 I

a score=418.000000
s ce10.chrX               885519 3 + 17718866 CAA
s cb4.chrX              21296142 3 - 21540570 caa
i cb4.chrX              I 128 C 0
s caeSp111.Scaffold412     55616 3 +   118955 CAT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   625222 38 -  1162296 I

a score=58891.000000
s ce10.chrX               885522 329 + 17718866 ACCTTTTCTTTGT---ATAACCACTTGTAGTAGTTGTTGGCCATCTTCTTGTAGTCGTT---GTCTCTTCCTCTTCCACAACTT---CTTCCTCTTCAATTTC---TGGAACTTGTGTTGT---------------TGTGGTTGTTGGCGTCGGTGTCGTTTGAATTCTCCGT-TTGGTGCCAGCAATTGTTACCTCTTT------CGGTTGAGTT------------GTTCGTCCGAGGATCAATGGAGCTTGAGAAGTTGGCTCTAACTTGCTCTTGTCGCATTGACCAATGTAAGCTATCTCGTCTATTACCAGGAATCGATTTTTTAAACCACTTTCCCATTGGGGTACTATGTTTAGCTGAAAACAAACT
s cb4.chrX              21296145 338 - 21540570 ACCtttttttCGT---AGTGCTGCTAGTAGTAGTTATCGGA---------GTAGTCGTT---gtctcttcttctacttcaACTA---TCTGTTCTTCGCTTTCAGGCTCAATTTTTGTCGTTGTCGTAGGTAT---TGTGGTTGATGGGGTCGGTGTTGTcagtatttttcttcttcgt--tcAGCA------ATTTTC--------GGTTCTATTGATTTCGGTGTAGTTCTCGACAATATTAATGGGGCTTGTGAAGTGGTAGTCGATATTGTTTTGTCGCATTTTCCGATATAAGCTATCTCGTCAATAACtaaaaagcgatttttcagcCCTATCTCCCATTGTGGTACTATATTCAACTGCAATGATTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   625260 359 -  1162296 aCCGTTTCTTGGTGTAACCACTGCTGGTAGTTGTAGTTGGATA---TGGTGTTGTcgtt---gtttcttcttcttctacatcTACAGTCTCCTCCTCAACTTC---TTCCGGTTCAGTCGCTGTTGTAGTTCTTTCTGTTGTCGTTGGTGTCGGTGTCGTCTGAATTCTTCGT-TTCGTACCCAGAATTGTGGATTCTCT------GGGTTCAATCGTTCTTGGTGTAGTTCTTGAAAGTATCAGTGGTGCTTGAGATGTAGCAGATAGCTTGGATTTGTCACATTGTCCTATGTACGCAATCTCGTCAATTACTAAGAACCGATTTTTTAGTCCCGTCTCCCATTGGGGCACAATATTGAGCTGAAAACCAACT
i caeRem4.Crem_Contig24 I 38 I 24
s caeSp111.Scaffold412     55619 357 +   118955 ACCGTTTTTTCGT---ATATCCGCTAGCTGTAGTTGTTGGATA---GAGAGTTGTTGTTTTGGTCTCTTCTGCtttctcaactt---cttcttcttcagtaAT---TTCAA---TAGTAGTagtctcaattttttcagttgtggTGGGCGTCGGAGTAGTATGTATTCTTCGT-TTCGTTCCAAGAATGGTCACTTCTTTCGGCTCAGGTTGATTTGGGTTTGGCGATGTTCTAGATAAAATTAGTGGTGCCTGAGTTGTGGTTTCGAATTTTGTCTTGTCGCACTGTCCAATGTATGCAATTTCATCAATCACCAGGAATCGGTTTTTGAGACCGCTTTCCCATTGTGGAACAATGTTCAGCTAAACAAAAA--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=426.000000
s ce10.chrX               885851 9 + 17718866 TGAAGTTGC
s cb4.chrX              21296483 9 - 21540570 TATATTTAc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     55976 9 +   118955 TGCAAtcgt
i caeSp111.Scaffold412  C 0 I 18
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   625619 24 -  1162296 I

a score=411.000000
s ce10.chrX               885860  9 + 17718866 --AGCTAAGAG
s cb4.chrX              21296492 11 - 21540570 caaactgagaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     55985 18 +   118955 I
e caeRem4.Crem_Contig24   625619 24 -  1162296 I

a score=449.000000
s ce10.chrX               885869 5 + 17718866 TAAAA
s cb4.chrX              21296503 5 - 21540570 aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   625643 5 -  1162296 TAGAG
i caeRem4.Crem_Contig24 I 24 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     55985 18 +   118955 I

a score=103712.000000
s ce10.chrX               885874 363 + 17718866 ACTAACCGTAAAAGTTCCAGTAATGTCCTTATTGAGTTCAAAAACGGCAAGTGTATTCCTCTCGTGCCTTGCAGACCTGGATTGCTCTACACAGTGAATTATATCATTATTGTCTCCTTAAAAATTTTAAAAATACGTGTTCATCAAACAAGTTGTGTGT-CTACCGTGTCCCAATGCACAAACTTGTAGAAGGATGTCCCCATTGGACCAATATCGAAACAGAACTTTAGCGTTTCCAGTCTGACATTGAATTGGATCACTTGACAACATTGCGGTTCCTTGAAGCACTAAACCAGCTGGAAATGTTGGAAGAAGCAGAGGATCTGCGATGGAATCTTCCAGAGATGGTATTGCACCTAGAAA
s cb4.chrX              21296508 364 - 21540570 aattacggtGAACTGCCCGATAATGTCTTTGTTGATTTCAAATACTGCTAATGTGTTTCGTTCATGTCTTGCTGATCTAGACTGCTCAACACAGTGTATAATATCATTATTGTCGCCTAAAAATAGATTATGGTGAATTTGCTCCATACGTGTTTAATTTCTCACCATAACCTAGTGCACACACTTGAAGAAGAATATCACCATTGGACCAGTAACGGAATAAAACTTTAGCATTTCCAGTTTGACAATTAATAGGATCACTTGACAACATTGCAGTGCCTTGTAGAACTAAACCTGCCGGAAAAGTTGGAAGTAGTGATATATCGGCAATCGAATCTTCCAGCGATGGAATCGCACCTGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   625648 315 -  1162296 CCTCACAGTAAATGTTCCAGCAATATCCTtattcagctcaaaaactgcCAAAGTGTTCCTTTCATGTCTTGCGGATCTAGACTGTTCTACACAATGGATAATATCATTGTTG-------------------------------------------------TCACCATGTCCCAATGCACAAACTTGTAGAAGGATATCACCATTGGACCAGTAGCGGAATAAAACTTTCGCGTTGCCAGTTTGACATTGTATGGGGTCACTGGATAGCATTGCAGTTCCTTGGAGGACTAAACCCGCTGGAAATGTTGGAAGTAGAGAAGGATCAGCGATGGAGTCTTCAAGAGATGGGATTGCgcctggaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     56003 310 +   118955 ACTTACAGTGAATATTCCAGCAATATCCTTGTTTAGCTCAAAAACGGCCAGAGTATTCCTCTCATGTCTAGCTGATCTGGATTGCTCCACACAGTGAATAATATCATTATTA-------------------------------------------------TCACCGTAACCCAGAGCACAAacttgaagaagaatatcTCCGTTAGACCAGTATCTAAAGAGAACTTTCGCGTTTCCAGTTTGGCATTGAATCGGGTCACTGGATAGCATTGCTGTTCCTTGCAAAAC-AGACCTGCTGGAGATGttggaaggagaagaggatCGGCAATCGAATCTTCAAGAGACGGGATGGCACCTA----
i caeSp111.Scaffold412  I 18 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-933.000000
s ce10.chrX               886237 11 + 17718866 AATAGATATCG--
s caeRem4.Crem_Contig24   625963  6 -  1162296 -------atgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     56313  8 +   118955 ---AGATATGG--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21296872  0 - 21540570 C

a score=515.000000
s ce10.chrX               886248 7 + 17718866 ATACTTA
s caeRem4.Crem_Contig24   625969 7 -  1162296 atattta
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21296872 0 - 21540570 C
e caeSp111.Scaffold412     56321 0 +   118955 C

a score=0.000000
s ce10.chrX               886255 86 + 17718866 AAGGTTATTAAAACAAATTTAACTTTCTGGGAATTATCACAACAAATGTTAAACTTGTAAAAACACAACTAATATTTCAAACTAGG
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21296872  0 - 21540570 C
e caeSp111.Scaffold412     56321  0 +   118955 C
e caeRem4.Crem_Contig24   625976  0 -  1162296 C

a score=-762.000000
s ce10.chrX               886341 34 + 17718866 TAGTGTATACCTTGTTACCGTACCACTTGTCTGT
s cb4.chrX              21296872  9 - 21540570 TAGGGCATG-------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     56321  0 +   118955 C
e caeRem4.Crem_Contig24   625976  0 -  1162296 C

a score=-1521.000000
s ce10.chrX               886375 37 + 17718866 CTCTGTTCATATGTTTTGGCAAACGGTCATTTCCAGC
s cb4.chrX              21296881  9 - 21540570 ------TAGTAAGTT----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   625976 23 -  1162296 ttctgCTAGTATGTTATG-----TGGTC---------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     56321  0 +   118955 C

a score=115398.000000
s ce10.chrX               886412 668 + 17718866  
s cb4.chrX              21296890 603 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   625999 590 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 33
s caeSp111.Scaffold412     56321 595 +   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=273.000000
s ce10.chrX               887080 1 + 17718866 A
s cb4.chrX              21297493 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     56916 1 +   118955 A
i caeSp111.Scaffold412  C 0 I 30
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   626589 33 -  1162296 I

a score=385.000000
s ce10.chrX               887081 28 + 17718866 AGTACTTCATACAA-AGTATTTTATTTTT
s cb4.chrX              21297494 29 - 21540570 AGTTTTTTGTGGAAGAATGTTTCGTACTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     56917 30 +   118955 I
e caeRem4.Crem_Contig24   626589 33 -  1162296 I

a score=0.000000
s ce10.chrX               887109 425 + 17718866 TATCTGCTTAGTCTTAGAAACAATGCCAACCACAAAATCAATGTAGAATAACAATAAAAATAGCCTTCGTTTATCAGGTGTGTACGATAATCGCGAGGTCCAGAATGTTGGGGGTTTTTTTTCAGAATAATCGTTGACATATTTTTGTTCTCATCAATTTGGGATTTTTAAGGAAAACATAGTGATTTTCATAAGTGGTGATATTTTTTAAACATTTCACAGACCGCCTTCTTTCAATAAAACTAATTTAGCACAATGAGAAAATTTTTAATTTTTTTTTGATTTTTCCGAACCCCAATACATAAACTATTTGGGCCTAGAATTTTTTTATGTAGTATCAGTTAAAAATTTTCCGCGGTATAAAAACATCACACAAAAATATGATGACTCTGTTTTTTTCTGTACTAAAAAAATGCGAGTAAATC
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21297523   0 - 21540570 C
e caeSp111.Scaffold412     56917  30 +   118955 I
e caeRem4.Crem_Contig24   626589  33 -  1162296 I

a score=100.000000
s ce10.chrX               887534 1 + 17718866 C
s cb4.chrX              21297523 1 - 21540570 C
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     56917 30 +   118955 I
e caeRem4.Crem_Contig24   626589 33 -  1162296 I

a score=782.000000
s ce10.chrX               887535 6 + 17718866 AATATA
s cb4.chrX              21297524 6 - 21540570 AATATA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     56947 6 +   118955 aaaaaa
i caeSp111.Scaffold412  I 30 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   626589 33 -  1162296 I

a score=88947.000000
s ce10.chrX               887541 256 + 17718866 CCTACCCTAAACGGCTTTTGAAGTTCTGGTATCTTCAATGAAACTTTGCCTGGCATAATTGACGAGTTTAACACTCCTGTACAATTGAACTTTCCACCTTCCAAATCAGTGAGACATATTTCTATATCAGCGTTTCCTATTACCCAATAAGTGAATGATAGTTCGGCGTATCCCATTTGACATCTTATCGCGTCGGTGACTAATGCATCTACTGGATTGCCACGGGATTCTATTAACGCGTAGGGTTCTCCTGAAA
s cb4.chrX              21297530 256 - 21540570 CTCACCCGAAATGATTTTTGCAGCTCTGgtattttcaaagaaacttTACCGGGCATTATTGACGAATTCAGCATTCCGGTGCAGTTAAATTTTTCACCATGCGTGTCCGTCAAACATATTTCGATATCAGCATTTCCAATGACCCAATACGTGAAAGACAGCTCTGCATAACCAATCTGACATCGAATCTCATCAGTAACAAGCGCATCCACAGGGTTTCCGCGTGACTCAATTAAAGCGTAAGGTTCTCCTAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   626622 256 -  1162296 CTCACCCTAAACGGTTTCTGAAGTTCTGGTATCTTCAGTGACACTTTTCCAGGCATAATCGACGAATTCAACATTCCAGTGCAATTGAACTTTTCGCCTTGTGAATCCGTTAAACATATTTCTAGATCAGTATTTCCAATGACCCAATAAGTGAACGACAACTCCGCATATCCTATTTGACACCTTATTTCATCAGTAACTAGAGAATCGACAGGGTTTCCTCGAGATTCAATAAGCGCGTACGGTTCTCCTGCAG
i caeRem4.Crem_Contig24 I 33 C 0
s caeSp111.Scaffold412     56953 255 +   118955 ctcaccctGAACGGTTTCTGTAGTTCTGGTATTTTTAGAGACACTTTTCCTGGCATTATCGACGAATTGAGCATTCCAGTACAGTTGAATTTATCTCCTAACAAGTCAGTCAAACATATTTCTATATCAGTGTTTCCGATGACCCAGTACGTGAAAGATAGTTCAGCAAAACCCATTTGACATCGTATTTCGTCTGTGACTAAAGCATCAACAGGGTTCCCACGAGATTCTATCAAGGCGTATGGTTCTCCTGAA-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-1974.000000
s ce10.chrX               887797 34 + 17718866 ATTCAGTTATAGTTTGGGACAGGAACTAAAATTA
s caeRem4.Crem_Contig24   626878 18 -  1162296 -------------AT---ACACATGTtaagatga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     57208 21 +   118955 --------ACAAcct---atagaaaaaaaaat--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21297786  0 - 21540570 C

a score=37.000000
s ce10.chrX               887831 35 + 17718866 ATTCAACAATTTGGTTAGGTATTTTGAATGTTTGG
s caeSp111.Scaffold412     57229 13 +   118955 -----------------agtattttg-----TTGG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21297786  0 - 21540570 C
e caeRem4.Crem_Contig24   626896  0 -  1162296 C

a score=0.000000
s ce10.chrX               887866 39 + 17718866 TTATTGCAGTCACAATATAGTTTGTTACCGCATAGACAT
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21297786  0 - 21540570 C
e caeSp111.Scaffold412     57242  0 +   118955 C
e caeRem4.Crem_Contig24   626896  0 -  1162296 C

a score=-1753.000000
s ce10.chrX               887905 97 + 17718866 AGATATCCATTCACAAATCTGTACTTCTCTACCATTTTCGTTGTTTCATTTTTGAGACATTTACAATTCATAAATAAATAGCTATATAAAAAACTTC
s cb4.chrX              21297786 27 - 21540570 AGATATGCAC--------------------------------------------------------------AATAAAAAG--------AAGATGAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     57242  0 +   118955 C
e caeRem4.Crem_Contig24   626896  0 -  1162296 C

a score=-578.000000
s ce10.chrX               888002 19 + 17718866 AAAAAATTTTAAAACCATC
s cb4.chrX              21297813  9 - 21540570 --------AGTGAATA--C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   626896 17 -  1162296 aaaaaattagaagacA--C
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     57242  0 +   118955 C

a score=70051.000000
s ce10.chrX               888021 263 + 17718866 TTACTTGGTATCTGCATGGTCCCAGTGGCAGCTAACCATAGTAAACTATCTGGCTCGCCTTTTGCAACTCTCCACCGATCTACATTATTTCCTAATGACATCCATCTGAAATTGATTGAAGTTAACTTTGTTAGAGTTAGAGTGG--------CGAAATTTGATATACCGGCAATCTGAATGAAAAGAGCAATCGTAGGATAGCTGTTCATGGTTCGGAGATAAAGGCGGTAAATCTGAAGTTGTAACGAATAATCCTAGGGCCACCTGAA----------------------
s cb4.chrX              21297822 257 - 21540570 TAACTTGGTATCTGCATGGTGCCTGTAGCCGCTAACCATAATAAACTGTCTGGTTCACCTCGCGCAACTCTCCACCGGTCCACATGACTTCCAACCGatatccatctgaaaattg-------------tttcaaagtgAGAGGGCATCTCTCATCAAAACAACT-TACCTGCAATTTGAGTTGAATGAGCAATCATAAGACAACTGCTCATAATTTGGGGAAAGAGGAGGTAAATCTGATGTTGTGACAAATAGGCCAAGGGCTACCTGAA----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   626913 254 -  1162296 TCACTTGGTATTTGCATCGTTCCAGTAGCTGCTAACCATAATAAACTATCGGGTTCTCCGCGTGCAACTCTCCACCGGTCTACATTACTTCCTGCGGATATCCATCTAAatcaat-------------ttgtaaaatttgaagatagttt---tgaaatcaacT-TACCTGCAATTCGAGTTGAAAGAGCAGTCGTAAGACAATTGCTCATGATTTGGGGATAGTGGAGGTAGATCAGATGTTGTTACAAACAGTCCAAGGGCTACCTAAA----------------------
i caeRem4.Crem_Contig24 C 0 I 394
s caeSp111.Scaffold412     57242 280 +   118955 CTACTTGGTATTTGCATTGTCCCAGTAGCGGCTAACCATAGGAGGCTATCCGGTTCTCCACGTGCAACTCTCCATCGATCGACATTACTTCCCATAGAtatccatctgaaaatag---aatccGGCcattgaagaaaaggaagga--------tGAAGATGAA--TACCTGCAGTTTGAGTTAAAGGAACAATCAAACGACAATTGCTCATGATTAGAAGATAGTGGAGGTAAATCTGATGTGGTGACAAAAAGCCCAAGTGCAACCTGCAAGTTCTTATTCTTCCGAAgtaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=589.000000
s ce10.chrX               888284 5 + 17718866 AAGTT
s cb4.chrX              21298079 5 - 21540570 ACGTT
i cb4.chrX              C 0 I 1862
s caeSp111.Scaffold412     57522 5 +   118955 atatt
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   627167 394 -  1162296 I

a score=166.000000
s ce10.chrX               888289 27 + 17718866 GTAAAATTTCTCCACCGCTGAAAACGA
s caeSp111.Scaffold412     57527 27 +   118955 gaaaagttttcattattctgaATGCCG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21298084 1862 - 21540570 I
e caeRem4.Crem_Contig24   627167 394 -  1162296 I

a score=-1038.000000
s ce10.chrX               888316  2 + 17718866 ------TC---
s caeRem4.Crem_Contig24   627561  2 -  1162296 ------TT---
i caeRem4.Crem_Contig24 I 394 C 0
s caeSp111.Scaffold412     57554 11 +   118955 TTACCTTTCCT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21298084 1862 - 21540570 I

a score=36087.000000
s ce10.chrX               888318 145 + 17718866 TACCTGAAGTATTTTGCTAACAATCGTATTTTGAGAATGTGCCGAAGCGAGCTGACTCATGGCACATAGAC--------------------------------------CTTCTGAAAAAAAGCGTTGGATGTGACGATGAG-------AGACTTTTGAAC-CGTTGA--CAAGTGCGAACAGG-TTAGTGGCA
s cb4.chrX              21299946 172 - 21540570 TACCTGTAGTATTTTGCTGACAATAGTATTCTGAGAGTGATTCGCCGCGAGCTGACTCATGACACATAGACTCACTACCACCTA--------------------GCGG-CTCCTGAAAcaagaaatgaaaagaaactgaaaataatatgTAACTTTTGAAC-CGTTGCGAGAAGTGCGAACAAGTTTAGGCGCA
i cb4.chrX              I 1862 C 0
s caeRem4.Crem_Contig24   627563 158 -  1162296 TACCTGTAGTATCTTGCTAACAATCGTATTCTGAGAATGAGCCGACGCGAGCTGACTCATGGCACATAGATCGTTGACCACTTG--------------------TCGgacttctgaaactgaaagt-----gtgacagaaaa-------taacttttgaac-CGTTGC--AGAGTGCGAACAGG-TTAGGCGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     57565 176 +   118955 TACCTGTAATATCTTACTGACGATCGTATTTTGAGAATGAGCTGAAGCAAGCTGACTCATGGCACATAAATCAGTGTGCACCTACTGTCACTCCCTCTCTCCGCTCAGCCTTCTAAAACTGAAAGTTTTATGAAATCG---------------TTTCGAACACGTTGG--AGAGTGTGAATAGG-TGAGGCGCA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       130118 5906 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-27971.000000
s ce10.chrX               888463 611 + 17718866  
s cb4.chrX              21300118 377 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   627721 664 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     57741 421 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       136024 484 +   783054  
i caePb3.Scfld02_62     I 5906 I 30
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-4058.000000
s ce10.chrX               889074 38 + 17718866 GTAAAACTATTAACTGACAAAATATGTCA---AACTTCTCT
s cb4.chrX              21300495 30 - 21540570 GTA-TAATATTCGC-------ataattca---agttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   628385 34 -  1162296 GTAGTATTATTGGT-------GAGTTTCAAACAGTCTTaca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58162  7 +   118955 ----------------------------------tttttct
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       136508 30 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=22725.000000
s ce10.chrX               889112 350 + 17718866 TTATCAATTCTTA------CTTCCC--------AAAGATAAAAGGTTTTTGAGTATGTCAA------------T-----GTACTATGCTAAAAGTGGAATAGCGTGCAATTTTTATTACACTTATGCCTATAATCAACTTAGAAAACAAATAAGTATCGGACAAATATGTA---------------AAAAAGAC---ATTCCAATTTTTCAACAA-----GAAGTATAGCTTATTTCTGTCAAAAAAATCG----AAATCAAAGTTAATCGAAAGCCGAATCGGTCAGTGGAAAATAAACTATTAACGCGGCCCTTTTTCGCAGGCGGGCGTAAGGCGACAAACGAGCCGATTTAAGTGGATCAGTCGAGTGGATATGGTCACACGAAA-AAGGCACGAATTTCTACTC
s cb4.chrX              21300525 263 - 21540570 -------ttggt-------ttgtga--------GAATAGACAATATATCCAGAAATGTACT------------T-----ACACTACGA------------------------------------TCATTATACACAAATG-----CAAAAT-----------ATTATTAGA--------------TTATAAGAC---GTaaaaggttttcagaaattgaaaaaattgagtt------------------------cgATCAGAGTCAAATGGAATTCGAATTG------cgaaaataaactattgacCC-------CCTGGCGGGTAGGGTGAAAACGACAAACGAACCGATTTAAGTGGATCAGTCAAGTGGATACGGTCAACCGAAA-AAAGCACGAATTTCTACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   628419 318 -  1162296 -------ttata-------ttttta--------aaataaa-attaatttcggTAATATGATAGTTCTCTCGAGT-----GCAtgacaaaaa------actgatttgtGAACGTGACTTCGTTTCTCTTTATAACTAGCTGATAAACGAAAT-----------AACATCACAACgaggttttcattttttgaaac---tgttcaatttttcagaaa---acaaatcaaaatt------------------------caatcaaaatccATCGGAAACTGAATTG------CTAAAATAAACTATTGACCC-------CCTAGCGGGC--GGTGAAAGCGACAAACGAGCCGATTTAAGTGGATCAGTCGAGTGGATACGGTCAAACGAAA-AAGGCACGAATTTCTACTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58169 291 +   118955 -------ttatttgaaaaattttca--------aaagtgtcTAGGACTTCATTCA--TGAG------------TAAGAGCTACAACAT------------------------------------------TGAACTTTTG-----CCAACTTAGTTC----CGAATTTACA---------------GATGAAATTTAGTATTTCATATCCGATACtataaagaataaaaatca--------aaaagaattgattcAAATCAGATACTCTTAAAAACTGAATCG------CATCAATAAACCTTTTACCC-------GTTTTCGGGG--CCTGAGAGCGACAAACGAGCCGATTTAAGTGGATCTGTCGAGTGGATACggtcaaatgaaaaaaggcaCGAATTTCTACTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       136538 292 +   783054 tcgtc-aatattt------ttttcactgaagagaaaaaaacgaggttTCCATCAATTTGAG------------T-TGACCCAGTTCAT------------------------------------ATTCTATGAACCCCTG-----TCAG-------------AAAGCTAC----------------TATAAAAT---GTATCAATTAGTcggaaacagcaaaaataaaact------------accgttcaactcaaaccaaattcactcaaaaaccgaattg------tgaaaataaactgtttaCTC----CTTGATCGCAAGA--AGCGAAAGCGAAAAACGAGCCAATTTAAGTGGGTTTGTCAAGTGGATACGGTCGAATGAAATAAATCACGAAGTTCTACTC
i caePb3.Scfld02_62     I 30 I 216
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-676.000000
s ce10.chrX               889462 40 + 17718866 GAG--AG--------CCTTTTTATCGTTTGATTGAACTTCTA---TTGTGATA
s cb4.chrX              21300788 41 - 21540570 GAGATAG--------CCAATAAATCTCCAGATT----CTACATTTTTATGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   628737 35 -  1162296 AAG--AG--------CCGCTATATCT-GGGATT----TTGGA---TTGTGATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58460 40 +   118955 GAG--AGCATTTCCCCCGAAATATCG-AAGAGT-------GA---TAGTGATA
i caeSp111.Scaffold412  C 0 I 98
e caePb3.Scfld02_62       136830 216 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-2585.000000
s ce10.chrX               889502 33 + 17718866 GATATGATATATCAGCGAGGGTGAAAAAAAAAC-----------------------------------
s cb4.chrX              21300829 18 - 21540570 ---------------TGggtatcgaaaaaaatt-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   628772 53 -  1162296 ---------------CGGCTCTGATAAAAAAGTGTTACATAAGAAATCggggagaaatggaaaaaagc
i caeRem4.Crem_Contig24 C 0 I 165
e caePb3.Scfld02_62       136830 216 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     58500 98 +   118955 I

a score=495.000000
s ce10.chrX               889535 100 + 17718866 AT-TGGAAATAGGTACATGTAATAAAAGGTATAGGTATTGAATTTCGTTTAAAAATTAATCC----------ATTGAC------CAAAAACGTTTGGAATTGAAAGTTAAGTTTTTA
s cb4.chrX              21300847 110 - 21540570 atctctAGAAAGGcaattaaaataa----ttt---ttctgaaatttgtcgaaaaaaaaattcgaattctcaaattgaCTCGAATTAAAAACGAATGAAATAACACTTTGAGTTTGTA
i cb4.chrX              C 0 I 64
e caePb3.Scfld02_62       136830 216 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     58500  98 +   118955 I
e caeRem4.Crem_Contig24   628825 165 -  1162296 I

a score=0.000000
s ce10.chrX               889635 641 + 17718866  
e caePb3.Scfld02_62       136830 216 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21300957  64 - 21540570 I
e caeSp111.Scaffold412     58500  98 +   118955 I
e caeRem4.Crem_Contig24   628825 165 -  1162296 I

a score=-511.000000
s ce10.chrX               890276 151 + 17718866 GTCACGAATGGTTGACTTT-TCGGCA----AATGTTTCGAT--TTGTGTGTACCAATGCCTATTTATGTAAATACC-----AATCTAGACCCCAGACACATGATCAAGAATCTCATATAATCTAATAATAAAATGCTTGTTACAATTGaataaataaacaaat---------------------------
s cb4.chrX              21301021 145 - 21540570 GTCACGAGTAGTTGCCTTTCTCCGAA--ACTTTGTTTC-TTCACCATGTATACC--------TTTTGAAAAGTGCC--CAAAACTTAAG---CAAACACATGATCAAAGCTC-----------AAAACTAGAACCCGCATT----------------CGAAATATGTTATTATTGTTATTATGGTGTG--
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig24   628990 131 -  1162296 GTCACGAGTAGTTGACTTTCTCGGAA------TGTTTC-TT--GTATGTGTGCC--------TTTTGAAAAGTGTC----AAATAAATG---CAAACACATGATCaaaaaccgaata------aaaactagaatatgcat-------------------aaatatgtt----------ttatatagggaa
i caeRem4.Crem_Contig24 I 165 C 0
s caeSp111.Scaffold412     58598 107 +   118955 GTCACGAATGATTGACTTTATCGGGAGGAGAATGtctc-at----------------------tcaaaagaaaatcgagACAGTTTATG---CAAATATGTGACCAAAAATCG----------AATACAACATTTTATA--------------------AAAT---------------------------
i caeSp111.Scaffold412  I 98 I 4
e caePb3.Scfld02_62       136830 216 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=47895.000000
s ce10.chrX               890427 153 + 17718866 aaataaatGTAAAACTAATAA-AAATGTGAAAATCAAATCCAAAAA----------------CGGGGCGGCCGGTGGGGGTCAAACGGTAAATAAAAT-GGATCTACAAAC------------------------ACTGCTCTCACTACAAAAAATAACATCTCACGAAACGCCACTTGTATCTAAATAAACCGA
s cb4.chrX              21301166 138 - 21540570 ----------AA----AATAA-ATCGGAGAAGGTAAAATA---------------------------------------ACAAAAAGGTAAATATAATGGGATTCGCAAACAGCGTTACAGAAAAAGGGGCC---GTTGCTctcacaacaaaaaataacatcTCACGAAGCGCCACTTGTATCTAAATAAACCGA
i cb4.chrX              C 0 I 684
s caeRem4.Crem_Contig24   629121 142 -  1162296 ----aaatgaaa----aataa-atcggtgtcggtaaaatata---------------------------------gggggtcaaacggtaaataaaatGAGATCTACAAAC-----------AAGGGGGGTTTTGGTTGCTCTcactacaaaaaataacatCTCACGAAGCGCCACTTGTATCTAAATAAACCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58709 150 +   118955 -----AAAGTAA----AATAA-AAGAGTGACAGTGgaataaataaaatca------------atCGGTTG-----GGTGGTCAAACGGTAAATAAG---GGATCTTCAAAC-----------AACCGAGGT----TTTGCTctcaatacaaaaaataacatcTCACGAAGCGCCACTTGTATCTAAATAAACCGA
i caeSp111.Scaffold412  I 4 C 0
s caePb3.Scfld02_62       137046 169 +   783054 -----AAATTAA----AATAACAATAATGAAACATGCAAATATAACATGACTAAAAAGGTATCTCGGTAG--AATGGAGGGCAAATGgtaaataaaat-gaatttacAAAC------------ACAAAGGTTC--TTTCCTCGCactacaaaaaataacatCTCACGAAGCACCACTTGTATCTAAATAAACTGA
i caePb3.Scfld02_62     I 216 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=4621.000000
s ce10.chrX               890580 53 + 17718866 CTCATGACATAAGAA----CTCTTCTTTTTTCT--CTC---------------------CGAATGGATTTGT--AAAAGAAA----
s caeRem4.Crem_Contig24   629263 76 -  1162296 CTCATGACATAAGAACTCTCTGCCTCTTTTTGTTACCC---TCACCTCTTAT-------TGAATAGATTTAGTGAATGAGAAATAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58859 81 +   118955 CTCATGACATAAGAGAAC-tcccttctttttgttaCCTCAACCGCCTCTCCACTTGCTTTGAAAGGATttattaaattgaaa----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       137215 59 +   783054 CCTATGACAAAAGAG----CTTTTTCATTCAGTTACCT----------TTCA-------TGAACAGATTTAT--AATaggaa----
i caePb3.Scfld02_62     C 0 I 222
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I

a score=3365.000000
s ce10.chrX               890633 15 + 17718866 TTGTTTGAATAGTCT
s caeRem4.Crem_Contig24   629339 15 -  1162296 TTGTTTGAATAGTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     58940 15 +   118955 ttgtttgaCTAGTCT
i caeSp111.Scaffold412  C 0 I 297
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I

a score=524.000000
s ce10.chrX               890648 23 + 17718866 AATGCGGTACAAGTTTGGGTAAT
s caeRem4.Crem_Contig24   629354 23 -  1162296 GATGCAGGttcagtttttgttat
i caeRem4.Crem_Contig24 C 0 I 317
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     58955 297 +   118955 I

a score=0.000000
s ce10.chrX               890671 316 + 17718866 GTAACTCAATTACAAGTTGAGTGTACGGCTTTATATCGACTCTTGAAAATTTCGAAAAAAAAATTCACGCACACTTTTATTTTGGGAATTTTATCCGTAAATGTTACATTTTTTGAAACTTGTTTCGTAATTAAAATGTTAAAAAATCAGAAAATCGTTTTCAAATAACTAAAAACCCAAAAAACAACAAAAAACGAAAAAGTGAAAAATTGGCAAAATTAGAAAATCAATAAAAAATTTGCCTCAAAATTAATTGTTCTCTACGAAAAAAAAACAATTGATCAGGTAGGTCATTTGTTTTTCATAGGATGAATGG
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     58955 297 +   118955 I
e caeRem4.Crem_Contig24   629377 317 -  1162296 I

a score=264.000000
s ce10.chrX               890987 40 + 17718866 AAATAAGACAAAAAAATCTCGATTAGCTTTATCCAAATCA------------------
s caeRem4.Crem_Contig24   629694 54 -  1162296 aaatcagataaaaa--tCTGGACT--TTTAATCCCAATCAATCATTGAGATAATTAAG
i caeRem4.Crem_Contig24 I 317 C 0
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     58955 297 +   118955 I

a score=5331.000000
s ce10.chrX               891027 27 + 17718866 GATCGATATCAATGATTACGAAACAAC
s caeRem4.Crem_Contig24   629748 27 -  1162296 GATCGATACCGATCATTACGAAACAAC
i caeRem4.Crem_Contig24 C 0 I 52
s caeSp111.Scaffold412     59252 27 +   118955 GATCAATATCTATGATTACAAAATAAT
i caeSp111.Scaffold412  I 297 C 0
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I

a score=342.000000
s ce10.chrX               891054 5 + 17718866 AAGAT
s caeSp111.Scaffold412     59279 5 +   118955 GAGAT
i caeSp111.Scaffold412  C 0 I 787
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeRem4.Crem_Contig24   629775 52 -  1162296 I

a score=0.000000
s ce10.chrX               891059 786 + 17718866  
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I
e caeRem4.Crem_Contig24   629775  52 -  1162296 I

a score=1611.000000
s ce10.chrX               891845 141 + 17718866 ATCATTTAAACATTAATAACATATAAGGAAAAGTTGAATAAAAAACCAAGTGTCGGCATCTTTGGTATAAATTCAAAAAAGGAAACAAAATCTATCAAACCGAGTTAACTAATCAAGAGTGAAGCTAATTTTTAACAGTGA
s caeRem4.Crem_Contig24   629827 111 -  1162296 attgttttaaaaatcggaaaaaattagaaacaactgaataaaaatc-----gtggcaataattgatataaa---------------aaaa---aCCCCATTGTGATTActaatcaaaaaagaa-------tttgacagcga
i caeRem4.Crem_Contig24 I 52 C 0
e caePb3.Scfld02_62       137274 222 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I

a score=15233.000000
s ce10.chrX               891986 178 + 17718866 -AAAAAGATG-AGAAACGAGAATTGGAGG--TTTCCGAGGACAACAGAACAAGGCGATAACTGGACATTGAATGCTATTGGAGAAGAAAACGCATGAAGAAAAGATGACATGACGATGCAAGATAGCTGTTGATCAGCCTCCCTCCTCGATGGCTTATGGTAAAATGCCGTCATCATCCGAC
s caeRem4.Crem_Contig24   629938 171 -  1162296 gaaacgaaggaaaaaacgagaaaaagagg-atTGAGGCAGCAGGCAGAACATGGCGATAACTGGACGATGAATGCTTC--------Gaatcgaagaagaaaatgacgaa--GACGACGCAAGATAGCTGCTGATCCCCCCTCCTTCTTGATGGCTTATGGTAAAATGCCATCATCGCAAGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       137496 172 +   783054 -AGATAAATG-AAAAACGGGAAGATGATGCATTGGAGAAAGCAGAAGAACA-GGCGATAACTGGACGTTGAATGCTTTTATAT-AGAAAATgagggagaaaagaaaaac-tgacgACGCAAGATAGCTGCTGATCCCTTCTCA----CAAAAGCTT-TGGTGAAATGGCATTGCATGCCGAT
i caePb3.Scfld02_62     I 222 I 32
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I

a score=-797.000000
s ce10.chrX               892164 44 + 17718866 GGCTTTTGCCTCTTCTCTCCCACCAATTTTCTCATATATTCAAG
s caeRem4.Crem_Contig24   630109 20 -  1162296 TGGTATGGTTTTTACTTTC------------------------G
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       137668 32 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I

a score=7996.000000
s ce10.chrX               892208 317 + 17718866 AAAAAACGCGTAACTTTGGCAGCCAATTCAAGTTTTTATTCTTATTTTGTACATACAAGTCA-AAGTCAAACAAATA----TAGTTGGAGCAAAATGCCTTTGGTT--CTAACAAAAGTTG---TTA---ACTGA---CAGATAAGAGTTGCA-AAAGTAATAGAAAAATACAGTATTTTGAAATTTCACTAGCTGAGCATTCTATTAGAATGAAAG--TTGATGGAA---AATAAATACAAA--TGAAAAATG-ACAAAATGGTAATTATTAAATAATTCTATATTAGAATGCATAATCCGCAATTTTCTTGAACATTTTCTTGAACTGTGACACCTGAAA
s caeRem4.Crem_Contig24   630129 288 -  1162296 AAAAGACGGGTGACAATAAATggcattcaaaacttttattc-cGTATGATACATACACATTGCAAGTCAAAATTACATAATTAAATAGA-TAAACTATCTCAGCATGAGTGATGTGAGTTCACCTTG---Attgtttttacttttcaattcca-aaaatattagaaa------------------------------------catcaaaatgaa----CTTACATCA---AACCTGTACATATTTGGCAAACGCAGGAAATAATTATTAGTA-----TTGTATATTAGAAAGCATAATCCGCAatctttttgaacattttcttgaATTGAGACACCTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       137700 260 +   783054 AAAAAAC---------------ACGTTCAAgaatatca--------------attttgattgCAAGTTGAAATATCA----TAAGTGGA-CAAAGTTTTATTGCTTTACAAATATCATTTT-CCGTGAGCATTGGGATCACTTATTGGTTGTATACAATACAAAATA------------------------------------CATCGGCGCCAAATCTTTTACAATACAGAACCTGTACATA----ACAAATG-GGGAGAAAATCATTAATA------AGTATATTAGAATGCATAATCGGcaattttcttgaacatttttttgaattgagaaacctgaaa
i caePb3.Scfld02_62     I 32 I 223
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I

a score=91.000000
s ce10.chrX               892525 1 + 17718866 T
s caeRem4.Crem_Contig24   630417 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 38
e caePb3.Scfld02_62       137960 223 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I

a score=0.000000
s ce10.chrX               892526 959 + 17718866  
e caePb3.Scfld02_62       137960 223 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21301304 684 - 21540570 I
e caeSp111.Scaffold412     59284 787 +   118955 I
e caeRem4.Crem_Contig24   630418  38 -  1162296 I

a score=385.000000
s ce10.chrX               893485 40 + 17718866 TGAAAACGTCTGGTTTGCAATAATCTACAACTAAATTTTC
s cb4.chrX              21301988 39 - 21540570 tgaaaac-tattattttcaaacataACAAACTGTATTCCA
i cb4.chrX              I 684 C 0
e caePb3.Scfld02_62       137960 223 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     59284 787 +   118955 I
e caeRem4.Crem_Contig24   630418 38 -  1162296 I

a score=-690.000000
s ce10.chrX               893525 4 + 17718866 -AACT
s cb4.chrX              21302027 4 - 21540570 CAAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     60071 4 +   118955 -AAAT
i caeSp111.Scaffold412  I 787 C 0
s caePb3.Scfld02_62       138183 4 +   783054 -AACG
i caePb3.Scfld02_62     I 223 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   630418 38 -  1162296 I

a score=122299.000000
s ce10.chrX               893529 185 + 17718866 TACTTTATTCTCACTAAACAACTTGGCAACAGTCATTTCCAACAAACTGCCAACTCTTCTTAATCGTCGTGTTGCTCCTAATGGAAGAACTTTGCTATCCATTGTTGGGTGCACTTGCATGTAAGATACATTCAATGTGAGCACGTGATGCTTCAAAGTGCCTAGTTCGATCATGTTGAGTCCTG
s cb4.chrX              21302031 185 - 21540570 TACCTTATTTTCGCTGAATAATTTAGCTACTGTCATTTCCAACAAGTTTCCTACTCTTCTTAGCCTTCTAGTCGCTCCCAAAGGCAGCACCTTGCTATCCATGGTGGGGTGTACTTGCATGTATGAAACGTTCAGAGTGAGCACATGATGTTTTAAAGTTCCCAACTCAATCATGTTCAAACCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   630456 185 -  1162296 TACCTTATTCTCACTGAACAACTTTGCTACTGTCATTTCTAGCAAGTTTCCAACTCTTCTCAGCCTTCTGGTAGCCCCCAGTGGTAACACTTTGCTGTCCATTGTAGGATGTACTTGCATGTACGAAACATTCAGAGTGAGTACGTGATGTTTGAGGGTTCCAAGTTCAATCATGTTCAATCCTG
i caeRem4.Crem_Contig24 I 38 C 0
s caeSp111.Scaffold412     60075 185 +   118955 CACCTTATTCTCACTAAACAGCTTTGCTACTGTCATTTCCAATAAGTTGCCTACTCTTCTCAATCTTCTTGTGGCACCCAATGGCAGTACTTTACTATCCATTGTTGGGTGCACTTGCATGTAAGATACGTTCAATGTGAGAACATGATGTTTTAATGTTCCAAGTTCGATCATGTTCAGTCCTG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       138187 185 +   783054 TACCTTATTTTCACTGAACAGTTTTGCCACTGTCATTTCCAACAAGTTACCAACTCTTCTCAGCCTTCTTGTAGCACCCAATGGCAAAACTTTGCTGTCCATTGTTGGATGCACTTGCATGTACGAAACATTCAGTGTGAGAACGTGATGTTTCAATGTTCCAAGTTCAATCATGTTTAATcctg
i caePb3.Scfld02_62     C 0 I 548
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-2579.000000
s ce10.chrX               893714  4 + 17718866 AAGT----------------------
s cb4.chrX              21302216  3 - 21540570 -AAA----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   630641 25 -  1162296 -AATAATATTGATTTGTAAGCGATTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     60260  4 +   118955 AAAT----------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       138372 548 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=565.000000
s ce10.chrX               893718 29 + 17718866 TTGAAAGTTAAAATCAATGTCAGTTATTT
s caeRem4.Crem_Contig24   630666 29 -  1162296 ATGAAATATCTGATGATCATCAATTGTTT
i caeRem4.Crem_Contig24 C 0 I 178
e caePb3.Scfld02_62       138372 548 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302219  0 - 21540570 C
e caeSp111.Scaffold412     60264  0 +   118955 C

a score=-646.000000
s ce10.chrX               893747 76 + 17718866 AATGAAGAAATGGAAAACCGGACTCACAGCAGTTGGGACTTTAAAATAAGTAAATAAAAAACTGAAATCGTAGCAA
s cb4.chrX              21302219 33 - 21540570 ------------------------CAAAACATT----actgtgaaa-----aaataaaaaaataaa----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       138372 548 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     60264  0 +   118955 C
e caeRem4.Crem_Contig24   630695 178 -  1162296 I

a score=-3284.000000
s ce10.chrX               893823 57 + 17718866 ACGACTTTTTACAAATTCACAGAATTATATCTTTTAACGAATTTTCACCCTGTTCTG
s cb4.chrX              21302252  9 - 21540570 ---------------------------------------aattatatt---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     60264 47 +   118955 ACAGCTTCTTAGGGCCCTCCA----Tgcatatttttaaaaattttattttt------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       138372 548 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   630695 178 -  1162296 I

a score=-3.000000
s ce10.chrX               893880 11 + 17718866 TGGGTTCTTTT
s caeRem4.Crem_Contig24   630873 11 -  1162296 TATATTCttct
i caeRem4.Crem_Contig24 I 178 C 0
s caeSp111.Scaffold412     60311  9 +   118955 tggtttgtt--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       138372 548 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302261  0 - 21540570 C

a score=53545.000000
s ce10.chrX               893891 173 + 17718866 -----------ACAGTTTTATAACACACACAAAAA-------------CCAAATCATATGCTTTCCGAA----------CAAAATGACCCACCTTCATTACTAGTACTGAGGATGGCGACCTCTGGTGGAAAGGAGTTTGGCTTGAGAGTGATAAAACCGTGCACAACACGTGTATCATCTCCAAACCAAGATGTGCTTCTGAAAAT
s cb4.chrX              21302261 148 - 21540570 ----cagCAAAA-------------------------------------------GTAAGCTTTCTAATAT------------ATCAGTTACCTTCATTGCTTGTACTGAGAATGGCAACCTCTGGAGGGAAAGAGTTTGGTTTAAGTGTGATAAAGCCATGCATAACTCTAGTATCATCTGCAAACCACGAAGTACTTCTGCAAAT
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig24   630884 199 -  1162296 acactgacaaaatattttt---ctacaCTGACAAAGATATTTA-----CAGTGACATAAATTTTGCATTATGTCTCAGTTGGAATCGCTCACCTTCATTACTTGTACTAAGGATAGCAACCTCTGGTGGGAAAGAATTCGGTTTCAATGTGATAAATCCATGCATCACTCTGGTATCATCTTCAAACCACGATGTGCTTCTGAAAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     60320 180 +   118955 -------------gtttttcatccACCCGGAAACTTGCATTGATTGgccaacaaaaaaaatttgataat--------------cACGTTTACCTTCATTACTAGTGCTCAGAATTGCTACTTCAGGTGGGAACGAGTTTGGTTTCAAAGTGATGAAACCGTGCATCACCCTCGTGTCCTCTTGGAACCAAGACGTGCTTCTGAAACT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       138920 161 +   783054 -----------acattttt----------aaaaaagaggTTAATT---CCAGATAATAAGACTAACA----------------------TACCTTCGTTACTCGTACTCAAAATAGCAACCTCTGGAGGGAAAGAATTTGGTTTCAATGTGATGAATCCATGCATCACTCTGGTATCGTCTTCAAACCAAGATgtgcttctgaaaat
i caePb3.Scfld02_62     I 548 I 230
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-1780.000000
s ce10.chrX               894064 1 + 17718866 --T
s caeRem4.Crem_Contig24   631083 1 -  1162296 -T-
i caeRem4.Crem_Contig24 C 0 I 32
s caeSp111.Scaffold412     60500 1 +   118955 A--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       139081 230 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302409 31 - 21540570 I

a score=168.000000
s ce10.chrX               894065 4 + 17718866 GAGT
s caeSp111.Scaffold412     60501 4 +   118955 TAGT
i caeSp111.Scaffold412  C 0 I 16
e caePb3.Scfld02_62       139081 230 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302409 31 - 21540570 I
e caeRem4.Crem_Contig24   631084 32 -  1162296 I

a score=0.000000
s ce10.chrX               894069 1546 + 17718866  
e caePb3.Scfld02_62       139081  230 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302409   31 - 21540570 I
e caeSp111.Scaffold412     60505   16 +   118955 I
e caeRem4.Crem_Contig24   631084   32 -  1162296 I

a score=114.000000
s ce10.chrX               895615 7 + 17718866 CATAAAA
s caeSp111.Scaffold412     60521 7 +   118955 CATCCAG
i caeSp111.Scaffold412  I 16 C 0
e caePb3.Scfld02_62       139081 230 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302409 31 - 21540570 I
e caeRem4.Crem_Contig24   631084 32 -  1162296 I

a score=220401.000000
s ce10.chrX               895622 335 + 17718866 ACTCACGTGAAATTCAAGGATGGTGGTCCGAACATTGGAACATTTGCTGGAGCAATATCAATTATCTCCTCATACTCAGTATCGTACAAATCAGTGGGGAATCTCAAGCCTTTCGAAGCTCGTGAATGCCATTTTCCCAAGAAAAATTGCATTGGCTCGAGAGCTGGTGCAAGTGGAATTTCAGGGGCTACGTAGTTTGGGTCAGGAGAGCACATTTTGCAGGATATAGCACAGTTGACGTCAAAGAAGTTGGTTTGAGTGAGAATTGTGTGGCATTTGTCTTCCACGGCCCATCGATCGCAACTCTTGTAGATGTTACGACACTTTCCTGTAAA
s cb4.chrX              21302440 335 - 21540570 ACTAACGTAAAATTGAGAGATGGGGGCCCAAACATTGGAACATTTGCTGGAGCAATGTCGATAATTTCTTCATACTCAGTATCATATAAGTCCGTAGGGAAACGTAGTCCTTTCGAGGCCCTAGAGTGCCATTTTCCTAGAAAGAATTGCATAGGCTCCAAGGCAGGAGCCAATGGAATTTCCGGAGCAACATAGTTCACGTCCGGCGTGCACATTTTACAAGAAACTGCGCAATTGACATCGAAAAAGTTGGTTTGAGTCAGAATCGTATGACACTTGTCTTCCACTGCCCATCGATCACAACTTTTGTAGATGTTACGAcactttcctgaaaa
i cb4.chrX              I 31 I 111
s caeRem4.Crem_Contig24   631116 335 -  1162296 acaTACGTAAAATTCAAGGACGGTGGGCCAAACATAGGCACATTAGCTGGAGCAATATCGATAATTTCTTCATACTCTGAATCATACAAGTCAGTTGGGAACCGCAGCCCTTTAGATGCTCtggaatgccattttccgaGGAAAAATTGCATAGGCTCAAGTGCTGGAGCGAGTGGGATCTCTGGAGCAACATAGTTTGGATCTGGAGAGCACATTTTGCAAGAAATAGCACAGTTCACATCGAAGAAGTTGGTTTGAGTCAGAATAGTGTGACATTTGTCTTCTACCGCCCATCGATCGCAACTCTTGTAAATGTTACGACACTTTCCTGTAaa
i caeRem4.Crem_Contig24 I 32 I 36
s caeSp111.Scaffold412     60528 334 +   118955 ACTCACGTGAAATTTAATGATGGTGGACCAAACATTGGTACGTTGGCTGGAGCAATGTCTATTATCTCTTCATACTCCGAATCATACAAATCTGTTGGGAAGCGTAGTCCTTTGGACGCTCTGGAATGCCATTTTCCAAGGAAAAACTGCATGGGTTCTAGAGCTGGAGCAAGTGGAATCTCGGGTGCTACGTAGTTTGGATCTGGTGAGCACATTTTGCAAGAAATTGCACAGTTGACATCAAAGAAATTGGTTTGGGTGAGAATTGTGTGGCATTTGTCTTCTACTGCCCAACGATCACAGCTTTTGTAAATGTTACGACACTTTCctgaaa-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       139311 334 +   783054 ACTTACGTGAAATTCAATGATGGTGGTCCAAACATTGGTACGTTTGCTGGAGCGATATCAATTATTTCTTCATACTCAGAATCATATAAATCAGTAGGGTACCGAAGTCCTTTCGATGCCCTGGAATGCCATTTCCCCAAGAAAAACTGCATTGGTTCCAAAGCTGGAGCTAATGGGATTTCTGGAGCTACATAGTTTGGATCTGGAGAGCACATTTTACACGAAATAGCACAGTtgacatcaaaaaagtttgtttgcGTTAATATTGTATGACACTTATCTTCAACTGCCCATCGATCACAACTCTTGTATATGTTGCGACACTTTCCTGAAA-
i caePb3.Scfld02_62     I 230 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=0.000000
s ce10.chrX               895957 4 + 17718866 AATG
e caePb3.Scfld02_62       139645 0 +   783054 C
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302775 111 - 21540570 I
e caeSp111.Scaffold412     60862 0 +   118955 C
e caeRem4.Crem_Contig24   631451 36 -  1162296 I

a score=-1067.000000
s ce10.chrX               895961 20 + 17718866 TGCGATGATTTCATTTGTGC
s caeSp111.Scaffold412     60862 11 +   118955 ---------tttagtttttc
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       139645  1 +   783054 -------------------C
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302775 111 - 21540570 I
e caeRem4.Crem_Contig24   631451 36 -  1162296 I

a score=1146.000000
s ce10.chrX               895981 2 + 17718866 GA
s caeRem4.Crem_Contig24   631487 2 -  1162296 GA
i caeRem4.Crem_Contig24 I 36 C 0
s caeSp111.Scaffold412     60873 2 +   118955 ga
i caeSp111.Scaffold412  C 0 I 34
s caePb3.Scfld02_62       139646 2 +   783054 GA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302775 111 - 21540570 I

a score=-2158.000000
s ce10.chrX               895983 47 + 17718866 ----TATTTTGTGCAATAGTTCTGGCGTTTCAAGACGTTCAAGGTTATAAA
s caeRem4.Crem_Contig24   631489 43 -  1162296 ----TATGTTGTCGGTTATTGCTGAACTCTGGTGATACT----ACTATAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       139648 28 +   783054 AATTTATGTTTCTG---ATTGTCAAA--------------------ATAAC
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302775 111 - 21540570 I
e caeSp111.Scaffold412     60875 34 +   118955 I

a score=-5566.000000
s ce10.chrX               896030 29 + 17718866 TTTAGTTTCGCTTCGAACTTTTACTTTGA---------------------------
s caeRem4.Crem_Contig24   631532 17 -  1162296 TTTAGATCCCCTAACTA---------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     60909 56 +   118955 TTTATTTTCACTTACTTCAACTATTCTACAACTTTCTGTACTAACTAATATTAAAC
i caeSp111.Scaffold412  I 34 C 0
s caePb3.Scfld02_62       139677 36 +   783054 TCAATTTCCGTTTATAACA--------------------GAGAATTCGGATCAAAC
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21302775 111 - 21540570 I

a score=-4452.000000
s ce10.chrX               896059 20 + 17718866 -TTTTTCAAAAAATGTTACCT---------------
s cb4.chrX              21302886 33 - 21540570 tttttttaaaagtggcaaacaacaaaaatatcc---
i cb4.chrX              I 111 C 0
s caeSp111.Scaffold412     60965 20 +   118955 -TTTCCCGGAAAATGCCA---------------GTT
i caeSp111.Scaffold412  C 0 I 44
s caePb3.Scfld02_62       139713 18 +   783054 -ACTGCTGGAAGCGAC-----------------GTT
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   631549  0 -  1162296 C

a score=-3264.000000
s ce10.chrX               896079 27 + 17718866 TTAGATTTTTGTTTCC---ACTTTCCGATT----
s cb4.chrX              21302919 21 - 21540570 ttgaat-------------attttttcatttgga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   631549 13 -  1162296 -------------------GTTTCCCCACTTG--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       139733 31 +   783054 TTGAATTGTGGTACTATCACTTTCACCAGTC---
i caePb3.Scfld02_62     I 2 I 9
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     60985 44 +   118955 I

a score=42351.000000
s ce10.chrX               896106 329 + 17718866 AAACTTTT---------------------------TTTTGAAT-----TTCAAA------CCAAACTACTGTTTTTCCTATAAGTTAGATGTCTATTAA----------TTTTATGTC----ATTTTCTAGATCGAAACAAGTAGTAACTAGTAAAAAACCGATAAAAACAAATCACATGT---------TTG------TCTAAGCTTT---------------------------------------------------CCCTTGTTATCTGATTGA----TAAGAT-------------------CAACTTACTGTGACAATATCTTCCCATCCATCCAGTTGCACATGTACATGACAGTTTTCCAGGTGTACAAGTCCCTCCATTCAAACACGGATCATTCTGACATGTCTCTTCTGTGAATCTCTTGAATATTAATTGTGTTGTTTTCGTACCCGCTGGAATATAA-
s cb4.chrX              21302940 447 - 21540570 aTACTACAATTTCCTCTAGTAAACTAGCCCAAACttcctgaat-----ttccaa------ataaatACCGGTTTTCGAG----AAGAGATATGTATATG--AACGTATGTATGAACCCTCTGACTTTTTAAAT---AATAAATGCCATTTAGTTGAAAAC-AACACAATGAGAAAATCGGATGccaataattaaaaa--aaaacacttttgaaaaaaaaatttttaatcctATCTTGACACATGTCACAATTACACGTTTTATCCGTGATAAAGTAAACCTATAATAAATACGATACAAATATTGAGTAACTTACTATGACAATATCTGCCCATCCATCCTTGAGAACATGTGCATGATAATTTTCCAGGTGTACATGTTCCTCCATTCAGACACGGATCATTTTGACATGTTTCCTCTGTGAACCTCTTGTAAACTAACTGTGTAGTTTTGGAGccaactgaaaattaa-
i cb4.chrX              C 0 I 446
s caeRem4.Crem_Contig24   631562 257 -  1162296 ---CTTCA---------------------------CCCTCACT-----CTCAAA------ATTAATGACCGC-------------------------------------CATTAACCT----ACTTTCT-------------------------------------------------------------CTGAGAA--ACCATACTGT---------------------------------TATCAC------------TACTCATCACAAGCTAAG---ATAACAA--------------------AACTTACTATGACAGTATCTGCCCATCCATCCTTGAGAACAAGTACAAGATAGCTTTCCAGGTGTACACGTACCACCATTCAGACATGGATTATTCTGACATGTTTCTTCTGTGAATCTCTTGAATACTAGTTGTGTTGTCTTTGATCCAGctgaaagaaag-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     61029 347 +   118955 aaactttt---------------------------ttcttggc---aACTCCAA------ATCAACTACCGATTTATTGTTTATCAAAACATGTCTAATCACATCCTTAACTAAAGCC----ACTGTTATGCT---TATAAAGGATCGTTAACCTACTTCTTCCGTGATGAAAACACTGAA---------CCAAGCA--TTAAAACTTT---------------------------------CCTTTG------------CATTTCTTACCACTTCAA-----AACAC--------------------AACTTACTGTGACAGTATCTGCCCATCCATCCTTGTGAACAAGAACAAGACAGCTTTCCAGGTGTACAAATCCCTCCATTCAAACATGGGTTATTCTGACATGTTTCTTCTGTGAATCTCTTGAATACTAGTTGCGTTGTTTTTGGACCAGCTATAAGTTTAA
i caeSp111.Scaffold412  I 44 C 0
s caePb3.Scfld02_62       139773 333 +   783054 attcattt---------------------------ttttttgtttgagctCTAACattggatgaaaaaaagctttgtGGTT--ACAGAGCTTTCCTGAC--GGTTAttctccaaaacc----a----------------aaaataaaatcgatcgaaattttgcaaaaagagaacagtgat---------tttggaaatttgataccaa---------------------------------catttt------------caattc--------caga-----aaCAC--------------------AACTTACTATGACAGTATCTTCCCATCCATCCTTGTGAGCAAGAACAAGCAAGTTTGCCTGGTGTGCATGTTCCACCATTCAGGCAAGGATTATTGCGACATGTTTCTTCggtgaatcttttgaaaactaattgcgtcgtttttgaaccaactgaaaaactac
i caePb3.Scfld02_62     I 9 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-2643.000000
s ce10.chrX               896435 6 + 17718866 TGTAAT-----
s caeRem4.Crem_Contig24   631819 6 -  1162296 agaaat-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     61376 6 +   118955 -----TGTAAT
i caeSp111.Scaffold412  C 0 I 277
s caePb3.Scfld02_62       140106 5 +   783054 -----tttat-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21303387 446 - 21540570 I

a score=300.000000
s ce10.chrX               896441 1 + 17718866 G
s caeRem4.Crem_Contig24   631825 1 -  1162296 g
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       140111 1 +   783054 g
i caePb3.Scfld02_62     C 0 I 974
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21303387 446 - 21540570 I
e caeSp111.Scaffold412     61382 277 +   118955 I

a score=552.000000
s ce10.chrX               896442 30 + 17718866 -TGATTAGAGATA-AGACTGTTACAATTGATA
s caeRem4.Crem_Contig24   631826 32 -  1162296 atgATTGTAATTAGAAGATGATACATATGATA
i caeRem4.Crem_Contig24 C 0 I 473
e caePb3.Scfld02_62       140112 974 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21303387 446 - 21540570 I
e caeSp111.Scaffold412     61382 277 +   118955 I

a score=0.000000
s ce10.chrX               896472 1380 + 17718866  
e caePb3.Scfld02_62       140112  974 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21303387  446 - 21540570 I
e caeSp111.Scaffold412     61382  277 +   118955 I
e caeRem4.Crem_Contig24   631858  473 -  1162296 I

a score=470.000000
s ce10.chrX               897852 10 + 17718866 AACATGGATA
s caePb3.Scfld02_62       141086 10 +   783054 AATACGGAAA
i caePb3.Scfld02_62     I 974 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21303387 446 - 21540570 I
e caeSp111.Scaffold412     61382 277 +   118955 I
e caeRem4.Crem_Contig24   631858 473 -  1162296 I

a score=623.000000
s ce10.chrX               897862  6 + 17718866 ----AAATGC
s cb4.chrX              21303833  6 - 21540570 ----AAAGgc
i cb4.chrX              I 446 I 3
s caePb3.Scfld02_62       141096 10 +   783054 AAACAATGGC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     61382 277 +   118955 I
e caeRem4.Crem_Contig24   631858 473 -  1162296 I

a score=1028.000000
s ce10.chrX               897868  7 + 17718866 TTC---AAAA
s cb4.chrX              21303842 10 - 21540570 tctgaaaaaa
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   632331  7 -  1162296 TCC---AAAA
i caeRem4.Crem_Contig24 I 473 C 0
s caePb3.Scfld02_62       141106  7 +   783054 TTT---GAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     61382 277 +   118955 I

a score=137825.000000
s ce10.chrX               897875 448 + 17718866 CCATACCTGCCGGTATCCGAATAAATAAACAAATAAGTAGGCATGTGAGAATACGAGTAATTGTCAT----TG-------GTTTTGGCGGGAAAGG--AATCCAGATA----------TTCGGATGAAAAGAAAACAGCGTCAG-TGGGAGGAATATGCAATGAACGTGTATATGTTGACAGCCCTCAA-ACAGAAGTCG----CGATCACACAACGAATATGCC--GATCGCTCTCTCTGTCTCCTTGTTCGGCG-TTTCCAACCGGCTCTACACCTCC--CACCACATTTCGAC-TTTCTCTGCTTCACTGCGCCG--TTTCGTCTTGGGTTGTGTCTCGTCTCCACTTCTTCGTTGCCTTCC-CAACCTCTTCACTTGTGCGTTCCCCTCGTTCCGATGA--ATATGATGATTCTGACAAACTGGAATTCAAT--TTTGAAAACGAAAACGAGACACCGAACCGGGGGGCAAAGCGATTCTCTTTCC-----------
s cb4.chrX              21303852 422 - 21540570 acacaccTGCTGGTATTCTTAAAAATAAGCAAAGAAAGAGACACGTCAGGATACTAGTAATGTTCATCTGGTGGCGGCTTGTTGCGATCTGATGCG-AAATCCAGATT--CAGGATTTCCCC--GCAAACGAAGA-AACGTTAGTTGTATTGTATATGCAATGAAC--GTAGATGTTGACGACGGCCAA-----CAGTCA----CGATCACACAGCGAATATGCCCACACAGATCCCCC--TTTCCTTGTTCGGCGTTTTCCAACCGGCTCTACACCCCCTCCACCACACTTTGacgtttctcttcttctttattcCT--CTCC---------------------------------TACACCATACCACCTCGTCATCCCTGTGTT--CCTCGTTCCGAA----CGATGACGATTCTGGCAAACTGGAAttcaataattcgaaaatgaaaactaGGCCTCG-------------------GCGGTCTCCCGAGAAACGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   632338 431 -  1162296 GCCCACCTGCTGGTATTCTAATAAATAAACAGACAAATAGACATGTCAGAATACAAGTAATGTTCAT----TGGCGGCAAGTTGCGATGGGA-----GAATCCAGATTTGCGTGGTCTTccg--aaaagagaaga-agcgt---TTGTATTGAATATGCAATGAAC--GTATATGTTGACGACGGCCAACA--GCAGTCG----CGATCACAC----AATATGCCTAGATAGATCTC------TCCTTGTTCGGCGTTTTCCAACCGGCTCTACACCTCCCACACCACATTTcgac-tttctctttttctctatttct--cttcctct-----TG------------ACTTTA----TCCATTAT-CCACCTCTTCACTTCTGTGTT--CCTCGTTCCGAAGAATGGATGATGATTCTGACAAACtggaattcaat--tttaaaattgaaaacgagaCGGGGTG--AGAGAGAGGGGGGATATGATTTCCCA------TCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     61659 416 +   118955 CCCTACCTGCCGATGTCCTAATAAACAAGCAAACGAACAGACATGTCAAGATACAAGTAATATTCAT----TGGCGGAAAGTTGCGGATTGAGGAG--AATCCAGATT----------CCTT--GCGAAAGAAG-----------TATATTGAATATGCAATGAAC--GTATATGTTGACAGCCCTCAACAACACAGCCGACGCCGATCACACAACGAATATGCCTAGATAGATCTC------TCCTTGTTCGGCG-TTTCCAACCGGCTCTACACCTCC--CACCACATTTcgac-tttctctttttctctattcct--cAACATCTCTCACTC------------ACTTCTTGGCTTC--TAA-CCACCTCTC-----CTGTGTT--CCTCGTTTCAAAGA-----AGATGATTCTGACAAACTGGAatccaat--tttgaaaacgaaaacgaGACGGAGGG--ttagaaaagaggaagataCGTTTC-----------
i caeSp111.Scaffold412  I 277 I 2
s caePb3.Scfld02_62       141113 429 +   783054 AACTACCTGCGAATATTCTAAtgaataaacagaaaaataagcaTGTaaaaaaaCGAGTGATGTACAT----TGGCGCAAAGTTGCGAATTGAGGAGAAAATCCAGATT----------TGCTGGGCGCCAGAAG-----------CGTATTCAATATGCAATGAAC--GTATATGTTGACAGCC--CAACAACACAGTCG--GCCGATCACACAACGAATATGCCTAGATAGATCTC------TCCTTGTTCGGCGTTTTCCAACCGGCTCTACACCTCC--CACCACATTTCGac-tccctctttttctctattccttGCGTTTCCTCTAGTTG------------GTTTCATCTCTTCAGCCA-TCACCTCTTCATTGCTGTGTT--CCTCGTTccgaagagaaagagataatTCTG-CTAactggaattcaaa--tttgaaaacgggaagaagacggagaa---gagagaagatcatttcacttttc-----------
i caePb3.Scfld02_62     C 0 I 454
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-19094.000000
s ce10.chrX               898323 172 + 17718866 CTTCTCAATTA---TGATG----AACAATTATATCCAAATTAT-----------------------CATGAATTTTGATTGCGGAATCGAATTTT-------AGGC--CGGTTTGGTGAAACTTAAACACATATCTCTATAAGGAAAGAAAAATGTAGCATTGAATTAAAAGTATATGTTTTTTTCC-------AATCTTGTGAT-AAGTAATTTTATA
s cb4.chrX              21304274 185 - 21540570 CTTTTCAATTGGGTTGATGTGTAATCAATCATAGTTCTATTAT------CTTTTTGAAATGATACAT-TGGAC---AAGCAACGAAACGAAACTG-------AGATATTGTTTCAG----------ATACACAGTAGAAAtaactaataaaaaattattatct-GAAAAAGGTGCAGATTGTTTGGCATAAAGTACTGATAAGTT-ATATTGTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   632769 203 -  1162296 ATTTTCAATTGGATAGATGTATA--CAATTATACCGGAATTACAGATGATTATTTGAACCTTTGGATATAGAC---AACTTTAGaaacaaaatagtttttaaaaata-cgTTTCAGT---------ATAGGAAGTTGCGCAAACATGGGCAAATTCAACCATT-GTTAGCACTGAATTTTTTCtcacgaaaaaaaatctggagtTAAGAGCGTTTTATG
i caeRem4.Crem_Contig24 C 0 I 175
s caeSp111.Scaffold412     62077  97 +   118955 --CTGTATTTGGATTGATG---AAACAATTATATATGAATTAT-----------------------CATGGAC------------------ATTG-----------A-TGTTTTgg-------------------------------------------------------tttcaaattattttgtaAGTGGAAAACTg--gtt-caatttt------
i caeSp111.Scaffold412  I 2 C 0
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-4151.000000
s ce10.chrX               898495 82 + 17718866 GATATTTGCATTGGGCAATAGGCTCAATGCCCGTTTAAGATTTTAGTCAGTGCAATGAAATTTCGTGGTCAGTGCAATTAAA
s cb4.chrX              21304459 36 - 21540570 ------------GG-----------------------------TAGAACATACAATTCTGTCCAATGGA-----ATattaaa
i cb4.chrX              C 0 I 144
s caeSp111.Scaffold412     62174 51 +   118955 --tatttcaaaggGAAAATAGTC----------------GTTTTAGTAGATATACTTCACTTTCTTAGA-------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   632972 175 -  1162296 I

a score=-318.000000
s ce10.chrX               898577 72 + 17718866 TTTTGTTGTCAGTGCAGTTGAATTTTGTGGCCATTGCAGCTGAATTTTGTTGTCAGTACAGTTGAGTTTTTT
s caeSp111.Scaffold412     62225 41 +   118955 ATTTATT--------------------TCGCCATGTGAATAGAGGTTTT-----------gttgagattttt
i caeSp111.Scaffold412  C 0 I 75
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21304495 144 - 21540570 I
e caeRem4.Crem_Contig24   632972 175 -  1162296 I

a score=0.000000
s ce10.chrX               898649 6 + 17718866 GGTcag
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21304495 144 - 21540570 I
e caeSp111.Scaffold412     62266 75 +   118955 I
e caeRem4.Crem_Contig24   632972 175 -  1162296 I

a score=638.000000
s ce10.chrX               898655 54 + 17718866 tgcaatggaatgtcgt--ggtcagtgca-----attgaattttgtggtcagtgcagttgaa
s caeRem4.Crem_Contig24   633147 58 -  1162296 tactagggaaggtcaccaAGTCAGTGTGGAGTTATTGGAT---GTAACCTATaccattgaa
i caeRem4.Crem_Contig24 I 175 I 167
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21304495 144 - 21540570 I
e caeSp111.Scaffold412     62266 75 +   118955 I

a score=0.000000
s ce10.chrX               898709 22 + 17718866 tttcgtggccagtgcagctgaa
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21304495 144 - 21540570 I
e caeSp111.Scaffold412     62266 75 +   118955 I
e caeRem4.Crem_Contig24   633205 167 -  1162296 I

a score=603.000000
s ce10.chrX               898731 30 + 17718866 ttttgttgtcagtgcagttgagttttttgg
s cb4.chrX              21304639 27 - 21540570 TTTAGTTTTCAGTACAT---ATCTTATTGA
i cb4.chrX              I 144 C 0
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     62266 75 +   118955 I
e caeRem4.Crem_Contig24   633205 167 -  1162296 I

a score=-7898.000000
s ce10.chrX               898761 146 + 17718866 tcagtgcagttga-ctttcgtggtcagtgcaatgaaatttcgtggtcagtgcaattgaattttgttgtcagtgcagttgaatgttgtggtcagtgcagttgagtttttcggtcagttcagctGAACTTCGTGGCCAGTGCAATTGAA---
s cb4.chrX              21304666 112 - 21540570 TCGGTACTGTACGTCTTGC--------TGAAAT-ATATTTGATG-----------CGCTGGTTGTTGT-------------TGTATTGAACAGTTTACAATACTACAAAAGTAATTGTACCTGAGCGTA----ccgttttgatttttaa-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     62341  74 +   118955 tcaaaacaattca-cTCTT--------TGAAAT-AGat------------------gatttttattct-------------tgtttttgacgttct-------------------------------tc----tcctttttgttAATGAT
i caeSp111.Scaffold412  I 75 C 0
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   633205 167 -  1162296 I

a score=-13364.000000
s ce10.chrX               898907 516 + 17718866  
s cb4.chrX              21304778 376 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   633372 420 -  1162296  
i caeRem4.Crem_Contig24 I 167 C 0
s caeSp111.Scaffold412     62415 316 +   118955  
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       141542 454 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=90293.000000
s ce10.chrX               899423 436 + 17718866 TGATTTTTATAATCCAAAAATGTGAAATTTACATGTAAGCTGTTTAATGTATAACTTAA----------AATA----AAT-----------------TACTAAAACAACGCATTTAAACCTCCTTGATTTGAATGCTCGGCCGCACGGGTGTTGGGCTATTTGAACTTTCCGA---TTCCAAA---TCCTCTCGATTTTCATTGGAAGCCCTCCGACTTCCATACAAATCATTTGATCTTTCAAAAAGCATTGCATCTACAAAAATTATCAACCTAAAAA-------------------------ACACTTT-------ACACAATAGTTTTCAATTCGAAATGAATTACCACCAAGTTTCCACTAATGCCGCAAACAATGTAACTCCAATTAGAACACAAGCACTAGGCATAAGTATTCCGTTTTGACTGTCTCTCGGGGGTTT-TGTCCACGTCATAATAATGTAGATGAAAAATGCGAAGAACTCAATGATGGTCCACTGAA-----A
s cb4.chrX              21305154 383 - 21540570 Gaaagtttat----caaaa--------------------------------------------------aataacgtTTC----------------AGATCAcgatttcacaatt----ttcagttatcaTGATATCTGGTCGGGTTATTGTTGGACTGTTTGAACATTCTGA---CTCCAAA---TCTTCGCGGTTCTCGTTTGATGTTCGCCTACTTCCGTATGAATCACtagttttttcaaacaacataGCATCCACAAAAATAATGAGCCTGAGAA--------------------AATTTATGTTTT-------GCAAAAGATCT---------GGGAGGCTTACCACCAAATCTCAACCAATGCTGCAAACAAAGTAACACCAATCAGGACAAATGCACTAGGCAGCAATATGCTGTGGT-------CCTCAGTATTTCGGGACCAATTGACAACAATGTAAATAAAAAACCCAGACAGCTCCACAATTGTCCACTACA-----A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   633792 389 -  1162296 TGATGTACTT----TAAAG--------------------------------------------------AATA----TTT----------------ATATTacaatttcacagtt----ttcagttatttttataTTGGGCCTAATTGAAGTTGGGCTGTTTGAGCTCTCTGATTCCTCCAAG---TCCTCTCTGTTTTCATTTGATGTCCTCCTACTCCCATAAGAGTCACTAGACTTCTCAAATAGCATGGCATCCACAAAAATGATGAGCCTATAAA--------------------AATTAGTAGTTT-----CAACAGAAGAACTTCA----TAAAGAAACTCACCACCAAATCTCCACTAGAGCTCCGAACGAGGTGGCACCTATCAAAACATACGCGCTTGGCATAAGAATACTTTGTT-------TTTCTGCATTCCGCGCCCATGTGACAACCATATAGATGAAAAATCCAAATAGTTCAATGATAGTCCACTGAA-----A
i caeRem4.Crem_Contig24 C 0 I 37
s caeSp111.Scaffold412     62731 396 +   118955 tcatttttaa----aaagatcaTACATACATC------GTTGT--------------------------GGTA----ATT----------------ATATCACAATTCCACGCTC----TCCTGTTATCTTGATGTTTGGCCT------TGTCGGACTACCAGAGCTCTGAGA---CTCAAta---tcttcttgtttttcgcGAGAAGCTTTTCTACTGCTGTAGGATTGTctggatttttcgaacaacATTGCATCCACAAATATAATCagcctaaaaatcaaaaagtacGAATTATGagattattcattt---------------------------------cttaCCACCAGACTTCCACCAATGCTCCAACTGATGTCATCAAAATTAAGACAAAAGCACTAGGAAGGAGAA---tgcttt-------tttctgtgttttttgtCCATGTCACAAccaaatatatgaaaaaacaaaaaagctcAATGACGGTCCACTAAAGTTTGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       141996 468 +   783054 tgattttcat----taattACGTGCAATTCCC------GATGTTTATGATTTAATTTGCCAAATTTGAAGAta----attaaaacaattttcattcatatcACAATTTCACAGTT----CTCAGTTATTGTGATATTAGGTTTCATCAATGTTGGACTATTGGAACTGTGAGA---TTCTAAaccttcttcttgattttcccGAGACGTTCTTCTACTACTATATGAACTGCTTGCTTTTTCGAATAACATAGCATCAACGAAGATTATGAGCCtggaaaccgagaaaaa------atagaattagtcactctaaatttaaaaaacaattaac----CATAGAAACTCACCACCATAGTTCAACCAATGCTCCAAACGACGTTGCAATTATCAAAACAAGTGCACTTGGCATCAGTATTGTTGTTT-------TCTCCGGGTTTCGTGCCCAAGAGAATaccaaataaatgaaaaaaccgAACAATTCAAGGATAGtccactgaa-----a
i caePb3.Scfld02_62     I 454 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=546.000000
s ce10.chrX               899859 1 + 17718866 A
s cb4.chrX              21305537 1 - 21540570 A
i cb4.chrX              C 0 I 38
s caeSp111.Scaffold412     63127 1 +   118955 A
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       142464 1 +   783054 a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   634181 37 -  1162296 I

a score=645.000000
s ce10.chrX               899860 7 + 17718866 GTACAAA
s caeSp111.Scaffold412     63128 7 +   118955 GCATAAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       142465 7 +   783054 atagaga
i caePb3.Scfld02_62     C 0 I 24
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305538 38 - 21540570 I
e caeRem4.Crem_Contig24   634181 37 -  1162296 I

a score=59.000000
s ce10.chrX               899867 3 + 17718866 ATT
s caeSp111.Scaffold412     63135 3 +   118955 TTT
i caeSp111.Scaffold412  C 0 I 23
e caePb3.Scfld02_62       142472 24 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305538 38 - 21540570 I
e caeRem4.Crem_Contig24   634181 37 -  1162296 I

a score=0.000000
s ce10.chrX               899870 457 + 17718866 GTATTGTTTCCTGTCACTTATAAGATATTTCTTCTCCTAAAATTTGATAAGAATATGTAAAATTAAAAATTTCAAAAAGATCAACGAGAACAGGCAAAATAGTTTTTATCGTTTTTTTTTCCAATTTCCACTAATGTTTTCGAAAGTCGATGGAATAATCCTAGTTTTCGGCAAATTGGCAATTCGACATTTTTCGAGTTCAAAAAGAGTTGAAATAAAAATCTTCGAAAATACTTATTTTTTCGATTTTTCTACAATACTGAAAACGTTTTTTTTGGCATTTTTAGATTTACttatgggaattgaaaatttttgacatttcggcaattcgataattgccgaatttgaaagttttcggcaatttggcaattgtcgtgttttaaaatttttggcaaccgtagttttcgtgaactgccgCACATCACTGGAATAAAATCAATATAATTTTGAAAACCCT
e caePb3.Scfld02_62       142472  24 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305538  38 - 21540570 I
e caeSp111.Scaffold412     63138  23 +   118955 I
e caeRem4.Crem_Contig24   634181  37 -  1162296 I

a score=100.000000
s ce10.chrX               900327 1 + 17718866 G
s caePb3.Scfld02_62       142496 1 +   783054 G
i caePb3.Scfld02_62     I 24 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305538 38 - 21540570 I
e caeSp111.Scaffold412     63138 23 +   118955 I
e caeRem4.Crem_Contig24   634181 37 -  1162296 I

a score=273.000000
s ce10.chrX               900328 1 + 17718866 T
s caeSp111.Scaffold412     63161 1 +   118955 T
i caeSp111.Scaffold412  I 23 C 0
s caePb3.Scfld02_62       142497 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305538 38 - 21540570 I
e caeRem4.Crem_Contig24   634181 37 -  1162296 I

a score=131173.000000
s ce10.chrX               900329 405 + 17718866 ACCTGCCAAATAACATGTATAAAATACCAATTCCTCCTTCTGCTCTTCCACATAGAGAGAGTGAACACT-GAAATGT-------------------------TTTTTTTTTCA-AA-AATTGAAATGGAATTTT----------------------CACTCACAAATTATTGCAATTGACAGAAAGAGAAACGCAAAGTAGCTCAAAGCTATTTGAGCTCCATAGCCTTGAAAATTGTCGGTGTAGAATGTTTTCCCGTCATTTATCCAGAAATCGATAGCAATCGTCGCGCAGAAAACTT--CAAGTTTTT---TGAATTAAGTAGAG---GAAAATAAGAAAAAAGAATACCCAAAGCGAAAATTTCCACCGTGCAAATCAGAGGGATCGCATCACGGAGAGATATACATCCAAGGCAGCATTTGTGCTTTGAACAGGGTTTAAGGAAGAACACCTAGAAA
s cb4.chrX              21305576 404 - 21540570 ACCTGCCAAATTATGTGCACTATATACCAGTTCCGTTGCCTTCTTTTCCACACAGTCAAtgtaaaaact-gaaatct------------tcgaaagttctaatttttgtCTTACAT-TGACTAAAA------------------------------AACTTACGTATAACGCAAACTGACAACATCTCAAACGCAAAGTATCCCAGGGCAATTTCCGTACCATACCCCTCAAAGTTGAttgtaaaaaatgttttgccattattgatccaaaaatcaatcgCGATTGTGGAACAAAGAACTA--AAACTAAGT---TAAATTAGTTATTAC--CAATTTTC-------A-GTACCTAGTGAAAATATTTCAACAGTGCATATAAGAGGAATGGCATCTCGAAGCGAAATGCAACCCAAACAGCATTTGTGTTTTGAGCAAGGTTTCAGGAAGAAGACCTGAAAA
i cb4.chrX              I 38 I 752
s caeRem4.Crem_Contig24   634218 400 -  1162296 ACCTGCCAAATGATATGCACAATGTACCAATTCCGTCGTTTGCTTTTCCAAATAGAAATTGTGAACACT-GGAA---------------TCAAAACTTTTA---CTTGACCTATATAAGTTTTTTC------------------------------AACATACATAACACTCCAATTGATATCAGAAGAAACGCTAAATATCCCAATGCAATTTGCGTCCCGTACCCTTCAAAATTGACTGTGTAGAATGATTTTCCGTTGCTAATCCAAAAGTCAATTGCAATTGTTGTGCAAAACACTG--AAAGGAAGTagatgaaatagaaaagattGCACTCT------------TACCTAATGAGAACATTTCAACAGTGCAGATTAGAGGGATGGCATCACGGAGAGAAATACATCCCAAACAACATTTGTGTTTAGAGCACGGCTTGAGGAAGAACACCTGAAAA
i caeRem4.Crem_Contig24 I 37 C 0
s caeSp111.Scaffold412     63162 450 +   118955 ACCTGCCATATGATATGAATTATATACCAATTTTGTCGTCTACTGTTCCAAACGAATAGCGTGAATActagaaatttaaatttatgaAGCAACAAGCTTTA-TTCTTGTCTta-gt-tattgaaaaataacattcTATTTTAACGTAACCTGCTTTAACTCACAAATAACCGCGATAGAGATCAacagaaatataaaatagCACATAGCAATTTCAGTTCCATATCCTTCAAAATTCACAGTGTAAAACGTTTTTCCATTGTTTATCCAGAAATCGATAGCAATGACGGTACAGAATACTGATAGAAACATa---taaaacaaatcaaaatattttttgt-------actTACCCAAAGAGAAAATCTCAATGGTACAAATGAGAGGAATAGCATCACGAAGTGATATGCAACCCAAGCAGCATTTATGTTTCGAGCATGGTTTCAGGAAGAAAACCTGAAAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       142498 403 +   783054 ACCTGCCAGATTATATGTACAATGTACCAGTTCTTTCGCTTCGTTTTCCATACAAACAGAGTGAACACT-GAACTTCGAataagagaaataaaaaact----------------ac-tTTTGAAA-------------------------------CACTCACAAATTACTGCCAAAGATACCAACAAAAACGCAAAGTAGAACAAAGCGATTTCAGTCCCATATCCTTCAAAGTTAACTGTGTAAAACGTTTTCCCATTGTTGATCCAGAAATCTGTGCAAATGGTTGTGCAGAACACTG--AAATCTGTT---TTCATTAGATC------TTATCTGTCAAGAAAACGTACCTAATGATAAGATCTCAAGGGTGCAAATGAGAGGGATTGCATCACGCAAAGATACGCAACCCAGACAACATTTGTGTTTGGAGCAAGGTTTTAAGAAAAACACCTGAAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-69.000000
s ce10.chrX               900734 1 + 17718866 A
s caeRem4.Crem_Contig24   634618 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     63612 1 +   118955 A
i caeSp111.Scaffold412  C 0 I 104
s caePb3.Scfld02_62       142901 1 +   783054 c
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305980 752 - 21540570 I

a score=-5725.000000
s ce10.chrX               900735 98 + 17718866 AGCCAAAAGA--ATATGTTGGTCAGTGCAAATCCAAATAATTT---TCGATAACTGACAGCTACAGAGCCGTTGAAAACAACCCGGTTAGTTTTGGAAAAATG
s caeRem4.Crem_Contig24   634619 24 -  1162296 ------------CTCCATAG-----------------GGATTT-----------TGAGA------------------------------------GAAca---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       142903 70 +   783054 aaacatgagaaaatgCACAGCGTAACGTTATGCAACAAGATTCGGCTTGATAAATGAGAGCT---------------------------------GAAAAGTG
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305980 752 - 21540570 I
e caeSp111.Scaffold412     63613 104 +   118955 I

a score=-3475.000000
s ce10.chrX               900833 176 + 17718866 CTAAGGTATTTAATAAGCTCATTTCAAAATTAGATAAATCTTTTTTTTTTCTAATTTTAAACTTCCCTTCCAGCGCTGTAGATTTTTGGTCAAAAAAATTTTTTTTTTCCGCTTTTTTTTGTTTTTCGGTTTCAAAAAAACTTTTGGATTGAGCTCTATTCCCTACCATTCATTTT
s caeRem4.Crem_Contig24   634643  50 -  1162296 gt------ttgaat-------tttcgatattAGTTAA-----------TGCTGCCTTGGAACT--------------------------------------------------------------------------AAAGTTTTAGA----------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       142973   0 +   783054 C
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305980 752 - 21540570 I
e caeSp111.Scaffold412     63613 104 +   118955 I

a score=-3121.000000
s ce10.chrX               901009 71 + 17718866 CAAAGCTCGTTTGAAAAAGCAATTGAAAAAAAAAA----CAAAAAAACCTACCCGTAGTAACGA------CATTTTAGTAC
s caeRem4.Crem_Contig24   634693 70 -  1162296 -----------GGaaaaatccctcgaaaaaacaaaaatcaggaaaaactTACCCGTATCAATCCAGACATCAACTCAACAC
i caeRem4.Crem_Contig24 C 0 I 13
s caePb3.Scfld02_62       142973 36 +   783054 ----------------CAATGCTCGGTTAAATAG-----TGCAAAAAGTCA-------------------CAACCC-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305980 752 - 21540570 I
e caeSp111.Scaffold412     63613 104 +   118955 I

a score=0.000000
s ce10.chrX               901080 13 + 17718866 AAACGTGACTAGG
e caePb3.Scfld02_62       143009  0 +   783054 C
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21305980 752 - 21540570 I
e caeSp111.Scaffold412     63613 104 +   118955 I
e caeRem4.Crem_Contig24   634763 13 -  1162296 I

a score=8656.000000
s ce10.chrX               901093 128 + 17718866 AATCCAATCAAAATACCTATG-------------TCTT-------AGAAGT--ACTCACCAACATTGCCGGAGAGCGGCTCACACACTTTTCATGTGGTGAACGATGACGT---CTATGGTCTCGTGGGTAACCACGATGCCCGGATACATGA------
s cb4.chrX              21306732 124 - 21540570 --A------AAATAAGCAATA-------------TTCTCGTGAGCGTATTT--ACTTACCAAAACAGCTGGTGAGCGGTTTTGACATTTATTGTATGCT---CTGTGAggt---gtgttttctagagaATACGCTTGACGCCAGAGTAGGTGA------
i cb4.chrX              I 752 I 77
s caeRem4.Crem_Contig24   634776 137 -  1162296 --GTCAATCAAAT-AGCAATAAACCAACCCCAACTTCTCGGAA--GTATGT--ACTTACCAACATTGCCGGAGAGCGGCTCACACACTTTTCTTGTGC------ATGACGT---TTATTGTCTAGCGTGTACCTTTGATGCCAAAGAATTTGG------
i caeRem4.Crem_Contig24 I 13 I 9
s caeSp111.Scaffold412     63717 114 +   118955 AAGCCAATCAAGA-AGCAATG------------------------TTATGT--ACTTACCAGCATTGCT---GACTGC-ACCCAC--------TGCGCT---CGATGACGT---TTATGGTTTGGAGTGTACTTTTGATGCCGAGGAATGTGAtgtgaa
i caeSp111.Scaffold412  I 104 C 0
s caePb3.Scfld02_62       143009 124 +   783054 --TTCACTCAA------AATG------------------------TTGTCTAGACTTACCAACATTGCTGGGGACCGTGACTCGtttttttCATGTGAA---CAATGCCCTTTATTATTGTTCAGAGCATATTTTCGCCGCCAAGAAATGTTATGAGAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-1851.000000
s ce10.chrX               901221 68 + 17718866 AGCCTTTTGTCTACTCGATAGCTCATAAGAGTAGTTGGAAGGCTTTTC-GAATTTCAGAATA----GGTTTCA
s caeRem4.Crem_Contig24   634922 47 -  1162296 TGCtttttttCTAATCGAGGACtcat-----------------tcttc-gaa----aaaatatgggaaa----
i caeRem4.Crem_Contig24 I 9 C 0
s caeSp111.Scaffold412     63831 42 +   118955 agttttttttcaaaacatagactcat-----------------tttga---------aaata----aaattc-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       143133 48 +   783054 AGTTTTCTCCCAGCTCGCAGACTCAT-----------------TTGagagaa----taaata----aaatgtA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21306856 77 - 21540570 I

a score=18472.000000
s ce10.chrX               901289 243 + 17718866 -------------ATATGTCAAAAACATGCATTTATGT-----------AGGAGTATTGGATTTCCGTTTACAATCTTTTTCAGCCCCTTTCACATGACATCT----CAATTAGCAGTTTCTATTCTCATATT----TTTGCAAATGTGATGCTTCATCTTTC-----------CGTTTTTCAACTCACCCTGGATAATGAAAGTACCGAGAGCCGAATGCTACTCCAAGCAGATGACGTTGAAAGTCGGGAAGCGTATGGATCCCGGGGTGGCATTAGCTGAAAA
s cb4.chrX              21306933 224 - 21540570 ATGTGTCACAAACACTCATGACATGAGTGCATTTGAGAACTATGT----ATGAAAACTAGAT--CAGTTTACG---TTTTTGATG----AGCAAATGATGTTTTTAGCATTTTCTAGAC-----------------------------------TAATTTCTGTCAG--------------TAACTCACGCGAGATAACGAGAGAGCCGAAAGACGAATACTATTCCAAGCAGATGATGTTGACAGTCGAGATGTGCATGGGTCTCTGGGGGGCAATAACTGAAAA
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig24   634969 255 -  1162296 atgtatgagaaa-atgtatgagaaaCG-GAAATAAAGTGCTAGGTTGTCAGAAACACTAGTT----GTTCAC------CGTCAAC----ATCaggtcattttt----cattttccatacATTTGGCACGTAT--CAATTAGCAGAAACG---CATCATGTTTCTTAA------GGCTCTTTTGACTCACCCTAGATAAAGAGAGTGCGGAGAGTCGTATACTATTCCATGCTGATGATGTGGATAGACGAGAAGCACAAGGGTCTCGGGGAGGCATCAGCTGGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     63873 223 +   118955 --------------ctTATGCACGACA--------------------ACAAGATTGAGAGAA------TGAAA---GATGTCAGA----TACAGAAAAGATCT----TATTTT-CTTGGATGATGTATGTATTTTAATTAG-----------CGTCATATTTCAAGAAAGAGTATGTTTTCAAACTTACTctggagagagaaagggcTGATAGTCGGATAGAGTTCAATGCAGATGACGTGGAGAGACGCGAAGCCCAAGGATCTCGAGGCGGCATCAACTAAAAA
i caeSp111.Scaffold412  C 0 I 217
s caePb3.Scfld02_62       143181 250 +   783054 -AGTA--------GCATATGAAAAATA------------TCCGGCTGTCAGAAACACGGGAc------taaag---tttttgagaac--taTAGGTCAGATTT----TATTTCGCACGTAATATGAGGATATTGCAATTAGCAAGGATGAATCGCATTACTTTAAAAATGATCGTATTACTCAACTCACCCTGGATATGGAAAGTGCTGAAAGTCGGATACTGTTCCAAGCAGATGATGTGGAGAGTCTGGAAGCACACGGATCACGTGGTGGcatgagctgaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-3009.000000
s ce10.chrX               901532 1 + 17718866 --A
s cb4.chrX              21307157 1 - 21540570 -A-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   635224 1 -  1162296 -A-
i caeRem4.Crem_Contig24 C 0 I 88
s caePb3.Scfld02_62       143431 1 +   783054 t--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     64096 217 +   118955 I

a score=28.000000
s ce10.chrX               901533 4 + 17718866 GTTG
s cb4.chrX              21307158 4 - 21540570 GATG
i cb4.chrX              C 0 I 230
s caePb3.Scfld02_62       143432 4 +   783054 aatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     64096 217 +   118955 I
e caeRem4.Crem_Contig24   635225 88 -  1162296 I

a score=643.000000
s ce10.chrX               901537 12 + 17718866 TTGTTTAAAATT
s caePb3.Scfld02_62       143436 12 +   783054 atgctcaaaatt
i caePb3.Scfld02_62     C 0 I 2508
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21307162 230 - 21540570 I
e caeSp111.Scaffold412     64096 217 +   118955 I
e caeRem4.Crem_Contig24   635225 88 -  1162296 I

a score=0.000000
s ce10.chrX               901549 822 + 17718866  
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21307162 230 - 21540570 I
e caeSp111.Scaffold412     64096 217 +   118955 I
e caeRem4.Crem_Contig24   635225  88 -  1162296 I

a score=31.000000
s ce10.chrX               902371 7 + 17718866 TCCAACG
s caeSp111.Scaffold412     64313 7 +   118955 tcaatcT
i caeSp111.Scaffold412  I 217 C 0
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21307162 230 - 21540570 I
e caeRem4.Crem_Contig24   635225 88 -  1162296 I

a score=37240.000000
s ce10.chrX               902378 192 + 17718866 TACATGACAAGGAATCAGCAGATCATTATTACATCTTTCTTTTGATTCCGGATAGTTAATTGAAAGGGACGAGTTTCTGGTTCCTGTGTATTGTGGAGAAGATTCACTATTCCGA------TTAATATAGTTGGAATTATTAGTGGTCAGTGACAAGTAGTTGGCAGAATTGTGAGAAGTGGAGTCTGATTGATCTTG
s cb4.chrX              21307392 192 - 21540570 TACATGGCTTGGCAAGAGTAGATCGTTTG---CGCATTCCTTCAATTCTGGATAGTTGATGGATACCGACGAATTTCGAGATCCGGAAAACTGCTCAGTGGCCGAATCGTTGAAAGCATGTTGTATATAATTGGA---GTTAGTGGATAATGTGAGAAATTGTTGGGATTTATGGGATATGTTGTCTGATTGATCCTT
i cb4.chrX              I 230 C 0
s caeRem4.Crem_Contig24   635313 192 -  1162296 TACCTGATTTGGCAGCAGTAAATcatttg---cttcttcttttgaatCCGGATAGTTTATTGACACAGAAGAATTGCGAGTCCCAGAATACATTGGGGATGATGCATCGTTACAGACATGTTGAATATAGTTAGA---GTTGGTTGATAACGTCAGACAGTGTTGAGATTTATGAGAAACCGTATCTGATTGATCCTT
i caeRem4.Crem_Contig24 I 88 C 0
s caeSp111.Scaffold412     64320 195 +   118955 TACATGACTTGGAAGCAAAAGATCATTtgcctcctcttccttcGATTCGGGATAATTAATTGACACTGACGAATTTCTAGATCCAGAGTATTTGATTGATAATGCATCATTGAAAACGTTCTGAATGGAATTGGT---ATTTGTGGATAGCGTGAGAAAGTTCTGAGATTTATGGGGAGTGTTATCCGATTCATTTTG
i caeSp111.Scaffold412  C 0 I 1051
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=708.000000
s ce10.chrX               902570 27 + 17718866 AGCAGGAGG------------GTTGATGATAGGTAGCAT
s cb4.chrX              21307584 33 - 21540570 G------GAAGCTCTCGAATTGTTACTAATGGGGAGCAT
i cb4.chrX              C 0 I 211
s caeRem4.Crem_Contig24   635505 39 -  1162296 GTTGGTAGACCCTAGCCTGTTGTTGCTGATAGGAAGCAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     64515 1051 +   118955 I

a score=413.000000
s ce10.chrX               902597 56 + 17718866 -----------AAGGATTCTGAAAAATATATGAGATTTCAGAAGTCGTATGTTGAAAATTAAATTAA
s caeRem4.Crem_Contig24   635544 56 -  1162296 TGttgataatctgaaaatttgaataatatatttgaattttaaa-----------acaattaaataaa
i caeRem4.Crem_Contig24 C 0 I 2283
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21307617 211 - 21540570 I
e caeSp111.Scaffold412     64515 1051 +   118955 I

a score=0.000000
s ce10.chrX               902653 1576 + 17718866  
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21307617  211 - 21540570 I
e caeSp111.Scaffold412     64515 1051 +   118955 I
e caeRem4.Crem_Contig24   635600 2283 -  1162296 I

a score=5886.000000
s ce10.chrX               904229 241 + 17718866 TTTTCATCCAAACGTTGTTTTTGATTTGAAGCGGAAAAACACTCATTCAATTTCTTTTTTTTTCTCCTTCTATTTTACTCCACGCGTCTTTCTTTTTTATTCACGCGTTCCCTACGTTCCCCAGAAAATTCAATTTCTAGTGTTCTTCATTCATTTCTATTCAGAAGGAAATGCCAGTGGGCGCCTTGTCTGAAAATGGAAAAAATAATATTAGAAAACATG-----AAAACAAGCTTCAGAAGGA
s cb4.chrX              21307828 213 - 21540570 TTTTCATCGAAATGCTGTTTTTGATTTGAAGCGGAAAAACACTCATTCAATTTC------CGCCTCCCTTTCTTGTGTTC-------TTTTCATCTACACAAATACGTTATTCACG----------AActcaatttctagaat--ttcttttcattcttttcagaa--aaactccAGTCAGGgtc---tctagaaa---aaaaaacgtgaatAGAGGGtatggtgaaaaaaaaaacaagagaagaa
i cb4.chrX              I 211 I 809
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     64515 1051 +   118955 I
e caeRem4.Crem_Contig24   635600 2283 -  1162296 I

a score=0.000000
s ce10.chrX               904470 3504 + 17718866  
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21308041  809 - 21540570 I
e caeSp111.Scaffold412     64515 1051 +   118955 I
e caeRem4.Crem_Contig24   635600 2283 -  1162296 I

a score=3572.000000
s ce10.chrX               907974 179 + 17718866 TGTTTTATTGCTGTACGATTTTATGAAGGTTTTGATTGTATCC---TAGAAGCCATTTGC---GTGTTCAGTATCTCCATTAGCCCCG---CATTTCTTGACTATAACTATTTCATTGCTTCTTCCAGCACTCCACCACGCCTCCATTTTGGA----CTCGGGGGGTAAATGGGGAGAAAGTGGGCTGGGCA
s caeRem4.Crem_Contig24   637883 176 -  1162296 TGTTTTATGGCTGTACGATTTTATAGTCGTTTTT----TACCCACTTTTTAGCCATTCTCCTAGTTTTC----CCTCTATTAACGCCGATTTATTCTCTTTCAGTGAGTATTTCATTGCTTATTCTAGCACT-----ACACGCCCATTTCGGCAGGCCTCTGAAGGCGTATGGAGCCGA---GGGGTGGGCC
i caeRem4.Crem_Contig24 I 2283 C 0
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21308041 809 - 21540570 I
e caeSp111.Scaffold412     64515 1051 +   118955 I

a score=26.000000
s ce10.chrX               908153 10 + 17718866 -TTCGGGGGGG
s caeRem4.Crem_Contig24   638059  4 -  1162296 -TTCG------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65566 10 +   118955 TTTCGGGGGG-
i caeSp111.Scaffold412  I 1051 C 0
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21308041 809 - 21540570 I

a score=-2539.000000
s ce10.chrX               908163 5 + 17718866 CGCGG--
s cb4.chrX              21308850 5 - 21540570 --cgcta
i cb4.chrX              I 809 C 0
s caeRem4.Crem_Contig24   638063 3 -  1162296 ----CTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65576 5 +   118955 TGGGC--
i caeSp111.Scaffold412  C 0 I 19
e caePb3.Scfld02_62       143448 2508 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=41863.000000
s ce10.chrX               908168 89 + 17718866 CTCTTCT-CTCCGAA-TTGTGGCTACTAACTCGGTTAATTGTGTGTGGCAAATGGTGACTGCACGCATTTTCGCT-----TCTTT---TGCTATGCATT
s cb4.chrX              21308855 89 - 21540570 ttttttt-cagcaaa-tttagG--GCTAACTCGGTTAATTGTGTGTGGCAAATGGTGACTGCATgcatttt--ctttctctttct---cgcTATGCAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   638066 85 -  1162296 TTCTTTTGCTCCGAA-TTGTGG--ACTAACTCGGTTAATTGTGTGTGGCAAATGGTGACTGCACgcagttt--ct-----tcttt---tgctaTGCAT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     65600 88 +   118955 ccttctc-cTCCGAA-TTGTGG--ACTAACTCGGTTAATTGTGTGTGGCAAATGGTGACTGcacacatttt--ct-----tctttcgactctgagcatt
i caeSp111.Scaffold412  I 19 C 0
s caePb3.Scfld02_62       145956 87 +   783054 ctttttt-ttctaaatttgtgG--GCTAACTCGGTTAATTGTGTGTGGCAAACGACGGCTGCCTCCATTta--ct-----ctttt--gctatttgcATT
i caePb3.Scfld02_62     I 2508 I 588
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=6416.000000
s ce10.chrX               908257 42 + 17718866 AG----TCCCCTCCTCACTTCGCCCGTCAATTTCTTACATTTAGTT
s cb4.chrX              21308944 33 - 21540570 ------TTCTCTCCC------GACCATTG-CTTCTTGCGTTTAGTT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   638151 34 -  1162296 ------TTCTCTCCT------CACCATCATTTTCTTACATTTAGTT
i caeRem4.Crem_Contig24 C 0 I 774
s caeSp111.Scaffold412     65688 41 +   118955 --tttcttccttctt---ttggCCCATCATTCTCTTACATTTAGCT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       146043 588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-932.000000
s ce10.chrX               908299 49 + 17718866 ---GGGGAGG---ATGCTCTCCGACGTTTTTTTTTTCA-----TTTTATTTTTTGAAATT
s cb4.chrX              21308981 42 - 21540570 TGAGGgaatgtctctttttttccaaatttcttctttca------------attt------
i cb4.chrX              I 4 I 469
s caeSp111.Scaffold412     65729 56 +   118955 -AAGAACAGG---CTTTTCCTCCTAATTACTTATCTCAGCGggcttttttgtttgatgCT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       146043 588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   638185 774 -  1162296 I

a score=560.000000
s ce10.chrX               908348 11 + 17718866 GAGTTGCCGGC
s caeSp111.Scaffold412     65785  9 +   118955 --GTTGCCAAC
i caeSp111.Scaffold412  C 0 I 374
e caePb3.Scfld02_62       146043 588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21309023 469 - 21540570 I
e caeRem4.Crem_Contig24   638185 774 -  1162296 I

a score=0.000000
s ce10.chrX               908359 1968 + 17718866  
e caePb3.Scfld02_62       146043  588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21309023  469 - 21540570 I
e caeSp111.Scaffold412     65794  374 +   118955 I
e caeRem4.Crem_Contig24   638185  774 -  1162296 I

a score=157.000000
s ce10.chrX               910327 4 + 17718866 AGGA
s cb4.chrX              21309492 4 - 21540570 AGCA
i cb4.chrX              I 469 C 0
e caePb3.Scfld02_62       146043 588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     65794 374 +   118955 I
e caeRem4.Crem_Contig24   638185 774 -  1162296 I

a score=644.000000
s ce10.chrX               910331 9 + 17718866 AAATGAGAA
s cb4.chrX              21309496 9 - 21540570 acagaagga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     66168 9 +   118955 aaaaacgga
i caeSp111.Scaffold412  I 374 C 0
e caePb3.Scfld02_62       146043 588 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   638185 774 -  1162296 I

a score=109305.000000
s ce10.chrX               910340 283 + 17718866 GAAAA------ACATTCATTCGCATTCCATATAAGCATTGCAAGACACATTAATTGAAAGTAAACGAGATGCG---AGAAAACGAAAGACGACATGGAGCTGCGTGAAGGAGTGTTGTGCCGTCGAGAG--GGGAGAAAACCGGAGGCGGCAAGAGAGCTTGAAGAAAACCTGCATTTTCT----------GTATATGT------------------------CTGCTCAC---------------------TGCCTTC------TTGCC----------CAGAGAACgaagatgaggaaaaagaagaagaagaagaagTATCACATGATTCAAATCCTTCTCTAACTCGCATATGTAATCTAGA
s cb4.chrX              21309505 273 - 21540570 gaaaa------aaattcattcgCATTCCATATTAGCATGGCAGGACACATTAATTGAAAGTAAACGAGATGCG---AGAAAACGAAAGACGACAT------------TCGAGTGGTGAGCT-TAGAAAG--GAGA-------------------------TGAAGAAAACCTGCATTTTGTCAGTGTCTGAGTGTATATATGTGCGTGTCGCtacttctgcttcttcttct-----------------------tattc------ttagTTTGCCCACAGCGAAGAAC--Caaagagga------ggaaaa-----aagTATCACATGATTCAAAT-CTCTTCTAACTCGCATATGTAAGCTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   638959 268 -  1162296 gaaaa------aaattcattcgCATTCCATATTAGCATGGCAAGACACATTAATTGAAAGTAAACGAGATgcgagaagaaaacgaaagacGACATG-----------CCGAGTGGCGAGCT-TAGAAAAGCGAGA-------------------------TGAAGAAAACCTGCATTTTCT----------gtgagtgtgtgtgtgtgccgCTA---------CTGCTTCT-----------------------CAGTC------AAGCCAAGCCAACAACAGAGAACgacgaagaagg------agaaaaagaagaagtatcACATGATTCAAATCCTTTTCTAACTCGCATATGTAATCTAGA
i caeRem4.Crem_Contig24 I 774 C 0
s caeSp111.Scaffold412     66177 290 +   118955 gaaaaacgCATaaattcattctcattcCATATTAGCATGGCAAGACACATTAATTGAAAGTAAACGAGATgcg---agaaaacgaaagacGACAT------------GCGAGTGGCCAGCt-tagaaaa--gaga-------------------------tgaagaaaacCTGCATTTCAT----------GCTGCTGC-------TACTGctg---------cttcttttccttcttttgctCAACACCAGTCCTTTCCCCTTTACGCCAAA-CAACGACATAGAacgaataagaaaa-----aagaagacgaagaagtaTCACATGATTCAAATCCTTTTTTAACTCGCATATGTAATCTAGA
i caeSp111.Scaffold412  C 0 I 463
s caePb3.Scfld02_62       146631 248 +   783054 GGGAA------AAATTCATTCGCATGCCATATTAGCATGGCACGACACATTAATTGAAAGTAAACGAGATACG---AGGAAACGAAAGACGACCT------------GCTAGTAGCGAGCC-TAGAGAA--ATA---------------------------GAAGGAAACCTGCATTTGGT----------GAGTgtg-----------tgctt---------cttctttt---------------tggaggGTCTTTC------ATGGC-------CAACATAGaacgaataagaaaa--------aagacgaagaagtaTCACATgattcaaatctttttctaACTTGCATATGTAATCTAGA
i caePb3.Scfld02_62     I 588 I 1220
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=452.000000
s ce10.chrX               910623 23 + 17718866 TATACGGCCCC-----GAGCACGCCGTC
s cb4.chrX              21309778 25 - 21540570 TATATGGGGCCCGGAAGACCAGGtc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   639227 21 -  1162296 TATATGGGGCC-------TCATGCCGCC
i caeRem4.Crem_Contig24 C 0 I 4785
e caePb3.Scfld02_62       146879 1220 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66467 463 +   118955 I

a score=759.000000
s ce10.chrX               910646 19 + 17718866 TTTTTTATTCTAATTTCTA
s cb4.chrX              21309803 18 - 21540570 tttttt-tattaatttcca
i cb4.chrX              C 0 I 984
e caePb3.Scfld02_62       146879 1220 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     66467 463 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=0.000000
s ce10.chrX               910665 2309 + 17718866  
e caePb3.Scfld02_62       146879 1220 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21309821  984 - 21540570 I
e caeSp111.Scaffold412     66467  463 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=1128.000000
s ce10.chrX               912974  98 + 17718866 TAACCGAAAAACTAAACCCAAAGAGCGCTTGGTTTT----------------TGCTGAAAGAATTTTAGATTGTTTTC-TCTATCGCCCGGCT----GGAGCTCAA---TTATTCTAGTAAG
s caePb3.Scfld02_62       148099 122 +   783054 TAACCTCAAAAGTATACTCAGAAAACAGCTCGTTCTGAGCTCAATATATTCGTgtttagaagatttttttctgttttcctctattttccaGCCCTCCAGTACTCGAATATTACTCTAGCTTA
i caePb3.Scfld02_62     I 1220 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21309821 984 - 21540570 I
e caeSp111.Scaffold412     66467 463 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-1699.000000
s ce10.chrX               913072  66 + 17718866 CTAGTGAAATTTATAAGAAG---AA------------------------TTGTGCGTTTTTTCTTCATT----------------------TCAAAAATACAACCTAACCACCGA
s caeSp111.Scaffold412     66930  88 +   118955 ctattgaaatttgaataaag---cATCGGTGATCGGCCAGC--------Ctgcaattctttttctca----aaatttgt------------CCACATAAGTTTCTCCGCAgccaa
i caeSp111.Scaffold412  I 463 C 0
s caePb3.Scfld02_62       148221 115 +   783054 TTAATAAAactgagaagaaggaagatcaATGTTCATctagttttcttcatttcagttcTTTCCTCCATTCCAATTTCATATTACTTCTCTCCTAAAAAAGCTGTTTCGCATCTAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21309821 984 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=33052.000000
s ce10.chrX               913138 282 + 17718866 AAAACC-ATTTGAGCGTAATAA--AGTTTTCTCTATTTCTTTCTCATTTCCTGTGACTCTTGACTCAGGAGACACTACTCCCATTT----TTAGTACTT------CACGTTTTATTTCCTGCTCACAATTTCTGTTTTTTTTTTAACACGACTATTTGTTATAGGTTACGCGGCAGGATGGTTGTGAGCTGACCGAAATATGGAAAGTTATCAAAGTGGACAGTACAGCGAGTCGGACTCGTATTCACACGAGTACAGTCTGAATACTGTACAAAATGGATTAGCTGGGGTAGGT
s cb4.chrX              21310805 244 - 21540570 AAAATC-ATTTGAGCGCGATAAGTAGTTTCA-----------CTAGCTTTTCGT--TGCCCGTTTC-----------CTGACTTTA----TTCGCAAATGAAACGCGTGTATAAATT--------------CAgtcct--tttcaaaaaaacta---aaattagaCTATTTTCCAGAATGGTATTGAGTTGAA---CAGATGGAGAGCTATCATAGTGGTCAGTTCGGCGAGCCAGACTCGTATCCGCACGAATACATTTCTAGCACTGTACAAAATGGATTGGCAGGGGTTAGT
i cb4.chrX              I 984 C 0
s caeSp111.Scaffold412     67018 224 +   118955 -aaattcatttgagcGTAATGAAAAGTTTCACCCAAcgctttctcattttgtg----aCTTGACTT-----------CTGCTCTTTCGGTTTAATACTT------TGCCTCTCAATT----------------------------------------------GACTACATTTCAGGATGGTTCTGAGTTGAC---AAAATGGATACTTATCATAGTGGTCAGTCTTACGAGCCAGACTCGTATCCACATGAGTATATTTCTAATACTGTGCAAAGTGGATTAGCCGGGGTGAGT
i caeSp111.Scaffold412  C 0 I 23
s caePb3.Scfld02_62       148336 226 +   783054 -AAGTT-ATTTGAGCGtgatgaaaagtttca-------tttcctGACTTTCTG-----CATGTCCT-----------CGACTTTTTC---CTAGTATATG---CGCACGTTTTAGTT--------------CTGTTAT---------------------ATGGTAAGAAATTACAGAATGTTTCTGAGTTGAC---AACATGGAACATTATCACAATGGTCAATCTCACGAGTCAGATTTGTACTCACACGAATATATTGCAAACACAGTGCAAAATGGATTAGCTGGCGTGAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-350.000000
s ce10.chrX               913420  8 + 17718866 TAAATTTT--
s cb4.chrX              21311049 10 - 21540570 TTACTTCTTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       148562  8 +   783054 TGACATTt--
i caePb3.Scfld02_62     C 0 I 85
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67242 23 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-3188.000000
s ce10.chrX               913428 405 + 17718866  
s cb4.chrX              21311059 487 - 21540570  
i cb4.chrX              C 0 I 33
e caePb3.Scfld02_62       148570  85 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67242  23 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=0.000000
s ce10.chrX               913833 35 + 17718866 CTTATTAGTATTGCATGCGAAACAAGAGCGTCGTC
e caePb3.Scfld02_62       148570 85 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21311546 33 - 21540570 I
e caeSp111.Scaffold412     67242 23 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-155.000000
s ce10.chrX               913868 13 + 17718866 GAAGAGAAAATCA------
s cb4.chrX              21311579 19 - 21540570 GCAGAAAGTACCactcttt
i cb4.chrX              I 33 C 0
e caePb3.Scfld02_62       148570 85 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67242 23 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-944.000000
s ce10.chrX               913881 29 + 17718866 ----------GAAAAA-------TCAAAAAATCGATCAAAATAGCT----
s cb4.chrX              21311598 44 - 21540570 gaaatttctagaaaaaatgcgtttcgaaaaa------aatactgtagatt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       148655 27 +   783054 ----------GAAAAA-------TCAtcaca------aaaattattaatt
i caePb3.Scfld02_62     I 85 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     67242 23 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=83044.000000
s ce10.chrX               913910 329 + 17718866 --------------TTGTAA---------------------TTTTCCAGGTTCCCATGTGGGCGATATGGTCATTTGTCATTTGTGCTGTATTAATAATTGCTGTGCTACTGCTCGACTACTGTGTGATCCGGCGCAATGCTTTAGGGAACACTTGCTGCACAAAAGCCCGTCAAAAACGCGGAACCATCAACGCGGCTCACCAAAAACGATCGACCAACATGTTGCTTAATGTATGAAGAAAGATCTTTTC-GGATTTTGAAAATC---AAATTACGTTAGTTTGACAGAAGCGAACGTACTTATTTCACTTTTTTCGG----------TAGCCCTTCAACCAGTCCAACCAATCACTTGATTTTTTTTTATCGTGA
s cb4.chrX              21311642 342 - 21540570 ttgtattgaagtttttttcagaagctaATTTATATTGAATTCTTTTCAGGTTCCAATGTGGGCAATATGGTCCTTTGTTATTTGTGCAGTCTTGATAATTGCTGTCCTCCTGCTGGACTACTGTGTCATTCGGAGAAACGCATTAGGAAATACGTGCTGCACAAAGGCTCGTCAGAAACGAGGAACCATCAACGCCGCTCATCAGAAGAGATCGACAAACATGTTGCTTAATGTATGAAGaaaga-tttttc-ggaatttgaaaaaaaaaaaattacgttAGTTTAACAGGAgcaatgttttta---------tttttggtaATTACGCCTATCCTCCGAAA-------------------------TTTTATCATGA
i cb4.chrX              C 0 I 27
s caeSp111.Scaffold412     67265 294 +   118955 --------------tcgtcA---------------------ATTTGAAGGTTCCGATGTGGGCAGTTTGGTCATTTGTCATTTGTGCTGTTCTGATAATTGCTGTACTTTTATTAGATTACTGTGTCATTCGACGGAACGCATTAGGAAACACTTGTTGTTCAAAAGCCCGTCAAAAACGTGGAACCATAAATGCAGCTCATCAAAAACGATCGACAAACATGTTGCTTAATGTATGAAGAAAGA-CTTTTC-GGATTTTGAGAACA------TTACGTTAGTTTGACAGGAGCGGCGCTTTTTACACC-CCTTTTCTGG----------TATTATCCTGCC-------------------------TCATAT-----
i caeSp111.Scaffold412  I 23 C 0
s caePb3.Scfld02_62       148682 290 +   783054 ------------------caG-------------------TATTTTTAGGTTCCAATGTGGGCAATCTGGTCGTTTGTCATTTGTGCTGTTTTGATAATTGCCGTGCTATTATTGGATTATTGTGTTATTAGGCGGAACGCGTTAGGAAACACATGTTGTTCAAAAGCCCGACAGAAAAGAGGAACTATCAACGCGGCTCACCAAAAACGATCTACAAATATGCTGCTTAATGTATGAAGAAAAC-cttttctggaatttgaaaaaa----acatacgtTAGTTTGACAGGATCGAagcttttt------cccttttttg----------tatttctccaaa-------------------------ttatag-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-3564.000000
s ce10.chrX               914239 40 + 17718866 CTAGAATGATCACTTTTTATTAAAACAAATGTTT--GTATTT
s caeSp111.Scaffold412     67559 31 +   118955 CCA--------ACTTTCTGT--A-ACGAACacaaaaatatcg
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       148972 21 +   783054 t-----------ttttccaT--AGGCTAATGCTA--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21311984 27 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-327.000000
s ce10.chrX               914279 38 + 17718866 AAATCCTGCATGTTTGTACAAATTTTTGTTATTTTATT----
s cb4.chrX              21312011 36 - 21540570 AAAACCCGCATGTTTGT--Agactttggtttttttttt----
i cb4.chrX              I 27 C 0
s caeSp111.Scaffold412     67590 17 +   118955 aaaaccCGCATGACCGT-------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       148993 25 +   783054 ------Cccattctcgt-----------ttttttttattatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-8024.000000
s ce10.chrX               914317 129 + 17718866 TTAAGACTTCCCAAGTTGGAAAGATTAATGCAAACATGCAAATTCAAGTGAAAGTCTCCTAAAAAACTTGAAGTTAAAAATTGCATTTTCACATGCATTTTCT---AACCAACTCAACAATTATCtatttaa
s caeSp111.Scaffold412     67607  25 +   118955 ------------------------------------TCCAAACTTA--------------------------------------------------GTTTAAC---AAACAAGC------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       149018  64 +   783054 t---------------------------------aattcaaatttatgtG--------------AATTTGAAT-----ACCTGCAT----------GTTTACCttaaatcaaattttacatCATC------A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312047   0 - 21540570 C
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=22986.000000
s ce10.chrX               914446 257 + 17718866 taatttatttatatCACCCCTGTCACTTTTTTTCCCATTCAATATTATTTTTGTTTCCGAAAGCAGCTTTTGAAAGTTTAACATTATCAAAATTTTAATGTTGTCTTATTCTGAAATTT-CCAGTTATAATAACTAAAGTTTTTTAGAAATTGAACCGAAACGTGGCTCAATTGGACCAAGATGTATAGAA-GTTCACAATGCTCAACGATGCACAAATCATTGGCTCCTCGGACATAATCAAAATCGAAACCAAATTT-
s cb4.chrX              21312047 203 - 21540570 ---------caatttacccATATTA---------CAACC-AA----ACTTTTGTTa-------------------------caatttcgaattctt----tGTTTTAATCGAGAAACTTCATTAATTTACTGAAAACTCATTTGCAGAAACTGAACCGTAACGTGGCACAATTGGACCAAGATGTATAAAA-GTTCA-AATGCTCAACGATTCGCAAATCATTGGCT-CTCAGACATAATcaaatc-aaaatgaaaatt-
i cb4.chrX              C 0 I 1376
s caeSp111.Scaffold412     67632 192 +   118955 -AATGAAACCCAGTCATATTCATCA---------CTACCCGA----ATTtgtgtta------------------------------------tttt----tcatc-aatgaACAAATGT-ACGAAGTCAATA-------AATTACAGAAATTGAACCGGAATGTGGCTCAGATAGACCAAGATGTATAACAAGTTCA-TATGCTCAGCGATTCACAAATCATTGG---CTCGGACAtaatcagaat-aaaattatgTTTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       149082 192 +   783054 AAATTAACCAAAAGTATCCCTGTca---------ccaccaaa----atttttgttg------------------------------------ttta----tgAGCTTATTGTCAGctgt---tattttgaaa-------ttttgcagaaattgaATCGCAATATGGCGCAATTGGATCAAGATGTATGAAATGTTCA-AacgctcaaaaattgacaaatcaTTGG---CTCCAACATAATCAATCT-TGGACCATAATTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-5498.000000
s ce10.chrX               914703 83 + 17718866 TTTCTTTTCACATTCCCATT-TTCCTTT-----TATTTCAGAACACATTCCACGGTTTAAATTCAATTTACATT--------TTCATTTGAT------TTCTG---
s caeSp111.Scaffold412     67824 97 +   118955 ATACTATTCA-----TTATTATTGTTACGAAGCTGCATCAATAAATCCTTAGCTTGATTGA----AACTAAATTAGCTAAGGCCTATTCAATAAACTAATTTgatt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       149274 78 +   783054 CACGTTCTCA-----TCagt-ttttagtgaaaattccACACAAGGCATTTCACGATTTTGA-------TGTATt------gttttctttagt------ttttg---
i caePb3.Scfld02_62     C 0 I 1131
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-2006.000000
s ce10.chrX               914786 431 + 17718866 TTTACCTGACACGATAAAGTGTACAAACATCACACGAA-----GCTTTCATTAGCTCTTTAATAAAATATTTG-----ACAATAATTGTGCA----TCTGGT-------------AATGCGTTTTAAAAGAATAATCTAATTAGAGTTTTGGATGAAAGTTGTATTAAGATTTACAGCTGTGTCAGTGTCATTCAAAAACATTCCATACATTTTTCAAACCTTCCATAACATTTCACAATTTTCTAGAACGTCCTAAAAATGTCAGAAATTTGCTGAAACTTCCGAAAACAGCCGGAAGTTTACAAAAGCTCCCATACATTTTCAGAACTTACTTCAATATTCTCCATATCCATATTTTTTAAAAATGGCTGTGCATTAAGCTCATCGTCTATTAAACTAAAAGAG---GTCA--TATTATATTTAGTTTCCAATGCCAAAAACTCCCTATCCCAGGTTTTCA
s caeSp111.Scaffold412     67921 349 +   118955 ------------gatgaagaagaaaaacaaaataggatcatctgtttttatttgtt------tcgaGTATTTACCACCACAATGGATTTGAAGAATCCTTGTtcgaaacaagaagaaaacatcatgaaaaaaaaatctttttttggaattgaatgGA-GAGGTATAAATAGTT--------GTTAGAGAC-TCtggaaacatg------------------------------------------aaaaaattctgaaaacgacAAGAAATT-------CATCCGAGA------GGCAGTTGACAATATAGGTCAT---CATTCAGGTCATACTTCAG----------ATC---ATAAGATAACGATAGCT-------AACTACATAGTTAGTCAAGTTGTAATAGTAGGTCAGCTAGCATTTTCGGATTCTAAAACACGGAAT--------CAAGGTTTTTA
i caeSp111.Scaffold412  C 0 I 64
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=0.000000
s ce10.chrX               915217 70 + 17718866 CAAAAATATGTGAAAGACTGAGGAAATCTTAAAAATAAACGTCCAACTTTCATAGCACCCCTCTGATCTT
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeSp111.Scaffold412     68270 64 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-2451.000000
s ce10.chrX               915287 482 + 17718866  
s caeSp111.Scaffold412     68334 498 +   118955  
i caeSp111.Scaffold412  I 64 I 39
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=0.000000
s ce10.chrX               915769 26 + 17718866 ACCCTGCTCAGGGTTGACACACTTTA
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeSp111.Scaffold412     68832 39 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=21.000000
s ce10.chrX               915795 52 + 17718866 TCGATTCTATTAATTAGCTCTTTCACCTTTTTTGTGACATTTTTAAATATTA
s caeSp111.Scaffold412     68871 45 +   118955 TCGGTTTCACTTACAAAATTATaca-----tttatcaattttttcaaaat--
i caeSp111.Scaffold412  I 39 C 0
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21312250 1376 - 21540570 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-1038.000000
s ce10.chrX               915847 18 + 17718866 --------AATTAAGTTATTTGAACG
s cb4.chrX              21313626 14 - 21540570 --------AAttaacttatttt----
i cb4.chrX              I 1376 C 0
s caeSp111.Scaffold412     68916 23 +   118955 atcacgtttataaaaaaattctg---
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       149352 1131 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=72956.000000
s ce10.chrX               915865 360 + 17718866 TTTCAGATGCCTTC---CACAAGGAGA--CAACAGGAGGGCGG---------AGGTGCAGATGCGGAAACACATGTAAGTTATTTAGACATTTTATTTTTCTCAAGA-ACTAAATTGTTAAAATTGCTACAATGCATTGTTTCAGACCGTTTACGGTACAAATCTGATAACAAATCGGAATAGCCAAGAAGACGAAAATGTTGTGGAAGAAGCGGAGCTGAAATACGGAGCATCTCACGTTATTCATCTATTTGTGCCGGTGTCACTATGCATGGCTCTGGTTGTTTTTACGATGAACACGATTACGTTTTATAGTCAAAACAATGGAAGGCATTTGTAAGTTTTCTAAAGAATTGATTGATTAAAAATATTTGA
s cb4.chrX              21313640 319 - 21540570 tttcagatgtcttc-----TAACAGAGATCCACCTGATGGAGG---------AGGAACAGTCACTGAGACgcttgtgagt------------tttttgatataaatatttttac--gCTAAAACT------TTCCATTCTTCCAGACAACATATGGCACAAATCTAATCTCAAACCGAAGTAGGCCAGAGGAAGAAAATCAAGTAGAAGAAGCCGAACTGAAATACGGAGCATCTCATGTTATTCACTTATTTGTTCCAGTTTCATTGTGTATGGCGCTTGTAGTTTTTACGATGAATACTATCACATTCTACAGTCAGAATAATGGAAGGCATTTGTAagtttt---------------atcgaatt-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     68939 324 +   118955 ttacAGATGCCTTCGGGAACAACGGAG-----CAAGACGGAGG---------TGGTGTGAGCGGGGAGACACATGTAAGT-------ATTGATTGTCTCTATTTGTA----TAA--Gtgaa----------tttgaatgtttcAGACAACATACGGGACAAATCTTATCTCAAACAGGAATGAGCCAGAAGGAGAAAATCAGGTGGAAGAAGCAGAATTGAAATACGGAGCATCTCACGTCATTCACTTATTTGTGCCAGTTTCAATGTGTATGGCAATGGTAGTGTTCACAATGAACACAATTACGTTTTACAGTCAGAATAATGGAAGACATTTGTGAGTATC--------------GATCGGagattaatga
i caeSp111.Scaffold412  C 0 I 7
s caePb3.Scfld02_62       150483 325 +   783054 TTCTAGATGC---CGTACTCAAGGGAG--CCTCAAGATGGTGGAGGAAACACTAGTGCAAGTAGTGAAACACATGTGAGTGCCACAAAATGATCGATTCTGTTCATA-TTTTGA--GTTAA------------TAACTCTTTCAGACAACGTATGGCACTAATCTCATCTCAAACAGAAGTGAACCAGAGGAAGAGAATCAAGTAGAAGAGGCTGAGTTGAAATACGGAGCATCTCATGTCATTCATCTATTCGTTCCGGTGTCTCTATGCATGGCACTCGTTGTTTTCACAATGAACACGATAACATTCTATAGTCAGAATAATGGAAGacatttgtgagtttt------------------------------
i caePb3.Scfld02_62     I 1131 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=1312.000000
s ce10.chrX               916225 11 + 17718866 TTTGTTTTATC
s cb4.chrX              21313959 11 - 21540570 ttcactTTATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       150808  7 +   783054 ----ttttatc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69263  7 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-3612.000000
s ce10.chrX               916236 168 + 17718866 AATTTGCATCTGTGCAATCGCACTCTTTGTCAGTGCAAAATAATTTTTGGTCAGTGCAAAATAATTTTTGGTCAGTGCATTGGTATTATGGTCAGTGCATTTGCAAGTCTGAGCTTTAACTATTTTCGTGGTTTTAATTTTACTCAATTTTCTATCAATATTTCTTTG
s cb4.chrX              21313970  35 - 21540570 AGTTTACCT--------------------------------------------GCATAAAATA--------------------TATTAG-------------------------------------------TTTAATTTGA--------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       150815   0 +   783054 C
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     69263   7 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=0.000000
s ce10.chrX               916404 7 + 17718866 GAAAAAA
e caePb3.Scfld02_62       150815 0 +   783054 C
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21314005 0 - 21540570 C
e caeSp111.Scaffold412     69263 7 +   118955 I
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=-2858.000000
s ce10.chrX               916411 48 + 17718866 GTTGAAGATTTACTCTGGAAATTTCGAAATAAACTGTAAATGGAAAAA
s caeSp111.Scaffold412     69270  4 +   118955 gttg--------------------------------------------
i caeSp111.Scaffold412  I 7 C 0
s caePb3.Scfld02_62       150815 22 +   783054 gctgagg---------gaatttttcgaagta-----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21314005  0 - 21540570 C
e caeRem4.Crem_Contig24   639248 4785 -  1162296 I

a score=84487.000000
s ce10.chrX               916459 173 + 17718866 TCAATCAACACAAACTTTGAATTATTTT-CAGACTATACACTCCTTTTGTCCGGGAAACAGACAGTATCGTTGAGAAGGGATTGATGTCACTTGGAAATGCTCTCGTCATGTTGTGCGTGGTCGTTCTGATGACAGTTCTGCTGATTGTTTTCTATAAATACAAGTTTTATAAG
s cb4.chrX              21314005 151 - 21540570 -----------------------ACAGTTCAGGCTTTACACTCCATTTGTCAAAGAGACCGACAGTATTGTGGAAAAAGGACTGATGTCGCTCGGAAATGCTCTTGTGATGCTTTGTGTTGTTGTTTTCATGACAGTTCTTCTCATCGTGTTCTACAAgtacaaattttacaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   644033 170 -  1162296 TCAATT-ACTAAAACC---AAATATTTTCCAGACTCTACACCCCATTCGTCAAGGAAACCGACAGTATTGTGGAGAAAGGATTGATGTCGCTTGGAAACGCACTTATCATGcttcttgttgttgttttcatgACAGTTTTGCTCATTGTCTTCTACAAATACAAGTTCTACAGA
i caeRem4.Crem_Contig24 I 4785 C 0
s caeSp111.Scaffold412     69274 156 +   118955 -------------acT---GGTTGTTT--CAGACTCTACACTCCGTTTGTCAAGGAAACTGATAGTATTGTAGAGAAAGGTTTGATGTCTCTTGGAAACGCACTTGTCATGCTGTTTGTGGTCGTGATGATGActattcttctgattgtcTTCTACAAATACAAGTTTTACAAG
i caeSp111.Scaffold412  C 0 I 41
s caePb3.Scfld02_62       150837 162 +   783054 ---------aCGAACT---TGCCATTTTGCAGACTCTATACCCCATTCGTCAAGGAAACGGACAGTATTGTGGAGAAAGGATTGATGTCACTTGGAAACGCGCTTGTCATGCTTTCGGTGGTAATTGTGATGACcgttcttctcatctttttctacAAATACAAGTTTTATAAG
i caePb3.Scfld02_62     C 0 I 116
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=92321.000000
s ce10.chrX               916632 234 + 17718866 CTTATTCATGGATGGCTTATTGTCAGCAGTTTTCTTCTTCTTTTCCTATTCACTACAATCTATGTGCAGTAAG--TTGATAT----ATTACT-----ATTCTCATAAAAATATCAATGT-TGCAGAGAAGTTCTGAAAAGTTTCGATGTGTCTCCCAGCGCACTATTGGTTTTGTTTGGACTGGGTAACTATGGAGTTCTCGGAATGATGTGTATACATTGGAAAGGTCCATTGCGTCTGCAA--------------------------------------------------CAG
s cb4.chrX              21314156 237 - 21540570 ttaaTCCACGGCTGGTTGATAATCAGCAGTTTTCTGCTGCTATTCTTGTTCACAACAATTTATGTTCAGTATG--TTCCCAATCAAATGTTC-----gttatgacaaacaattt-gttt-ttcagagaagTCCTCAAAAGCTTCGATGTGTCTCCGTCTGCAGTAACAATTTTGTTTGCACTTGGAAACTATGGAGTATTGGGTATGATGTGTATCCACTGGAAAGGCCCACTACGCTTGCAA--------------------------------------------------CAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   644203 288 -  1162296 GTGATTCATGGCTGGCTGATTGTTAGTAGCTGTTTactcttgtttcttttcacaACAATATACGTACAGtaag--ttttcaac---atttttggcAGGTTGTAAT-AACATCTC-TTGT-TTCAGAGAAGTTATGAAAAGCTTCGATATTTCGCCATCTGCTGTTCTGGTGCTGTTTGGTTTAGCAAACTATGGAGTAGTGGGAATGATGTGTATTCATTGGAAAGGACCTCTACTTCTCCAACAGGTACGCTAAATTTCACAGTCACTGATTTCATCTGATGTCAAAGCTTTCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     69471 237 +   118955 CTAATCCATGGGTGGTTGATCATCAGTagctttcttcttctgttcctATTTACAACCATTTATGTTCAGTGAG--CAATCATATGCAATTTT-----ATTgcaat-cgaatttt-tttcattcagagaAGTTCTCAAAAGTTTCGACATCTCTCCATCTGCTGTTCTTGTTATATTTGGATTAGGAAACTATGGAGTTCTTGGCATGATGTGTATTCATTGGAAAGGACCACTCCGTTTACAA--------------------------------------------------CAG
i caeSp111.Scaffold412  I 41 C 0
s caePb3.Scfld02_62       151115 235 +   783054 CTAATCCACGGATGGTTGATCATCAGCAgtttccttctcctcttcctctttaCAGCTATTTATGTCCAGTGAGTTTTGTCATCCACAATTCA-----GGTCc----tggatctt-tttt-ttcagagaagtgcTTAAGAGTTTTGACGTTTCTCCATCTGTGATACTTGTTCTGTTTGGATTAGGCAATTATGGAGTACTGGGAATGATGTGCATCCATTGGAAAGGACCTCTTCGTTTACAG--------------------------------------------------CAG
i caePb3.Scfld02_62     I 116 I 202
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=128991.000000
s ce10.chrX               916866 312 + 17718866 TTCTACCTTATTACAATGTCTGCACTAATGGCTCTGGTCTTTATCAAGTACCTACCAGAATGGACTGTGTGGTTTGTGCTGTTTGTTATCTCGGTTTGGGATCTGGTTGCCGTGCTCACACCAAAAGGACCATTGAGATATTTGGTGGAAACTGCACAGGAGAGAAACGAGCCAATTTTCCCGGCGCTGATTTATTCGTGTAAGTTTCCTAAT-TTATGG----------AATTA------------------------ATATT----------------------------------------------------------------CATGACGTTTCAAATTCTAAAACAT-----------------TTTCAGCTGGAGTCATCTATCCCTACGTTCTTGTTACTGCAGTTGAAAACACGACAGA
s cb4.chrX              21314393 335 - 21540570 TTTTACCTTATCACAATGTCAGCATTGATGGCTCTTGTATTCATCAAATACTTACCAGAATGGACAGTTTGGTTTGTGCTGTTTGTCATATCGGTCTGGGATCTTGTCGCTGTGCTCACTCCAAAAGGACCACTGAGATACTTGGTTGAAACGGCACAAGAAAGGaatgaaccaatttttccagctcTCATATATTCatgtaaatttttattt-ttatggttCAGT----AACAA------------------------TTGTA-----------------------------------------------GGAAAGCCAATA-----CAAGGCCAtt----tttttGTGTct--------catctgaattttcagctggaGTCTTATATCCGTATGTGCTGGTCACCGCGCTCGAGAATCCAGAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   644491 428 -  1162296 TTCTACCTCATCACTATGTCCGCCTTGATGGCTCTCGTGTTTATCAAATATCTTCCGGAATGGACGGTGTGGTTCGTGCTTTTTGTGATTTCCGTCTGGGACCTGGTTGCTGTACTCACACCAAAAGGCCCGTTGAGATATCTGGTGGAGACTGCTCAGGAGAGAAACGAACCAATATTCCCAGCCCTGATATATTCgtgtaagtttttttgtattatatGTCAGTGTGAAACAAGAgttttcttcccaaaaaaggTTGTTGTACTGTCATTAAACTTTAGAATTGGATATGATTTTCATGAGATCTGCTTGGAAAGCAACAAGTGATCAAATCTATTAAAATAATTGAGCCGACCTAtaatatattcattttcagctggagTCATATACCCCTACGTCCTTGTCACCGCTGTTGAGAATCCAGGAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     69708 289 +   118955 TTCTATCTCATCACAATGTCGGCTCTAATGGCTCTCGTCTTCATCAAATATCTTCCTGAATGGACTGTTTGGTTTGTATTATTCGTTATTTCCGTTTGGGATTTGGTAGCTGTGCTCACCCCGAAGGGACCATTGAGATATTTAGTGGAGACTGctcaagagagaaatgagcCTATTTTCCCCGCTCTTATTTACTcgtgtaagttttttttg-----------------aaaaa------------------------ctttg------------------------------------------------------------------------------cATTTAAATTG----------CTGCGTGTTTCAGCCGGTGTGATTTACCCTTATGTTATTGTGACTGCTGTGGAGA----------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       151552 295 +   783054 ttctatcTCATCACAATGTCAGCACTTATGGCTCTGGTTTTCATCAAGTACCTACCAGAATGGACCGTTTGGTTCGTGCTTTTCGTCATATCGGTATGGGATCTGGTTGCTGTGCTCACGCCAAAAGGACCGCTAAGATATTTGGTAGAAACTGCTCAAGAAAGAAACGAACCTATCTTCCCAGCTCTCATCTATTCATGTAAGTTATCAATC-----------------GAGTT------------------------TCGTT------------------------------------------------------------------------------TGCTCAGATTG--------------GGTTTTCAGCCGGAATCATATACCCGTATGTTCTCGTAACCGCTGTCAAAAACTCGGAAGA
i caePb3.Scfld02_62     I 202 I 61
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-20357.000000
s ce10.chrX               917178 127 + 17718866 -------------------CCCCCGTGAACCGACGTCGTCAGACTCAAATAGTGAGTATCACCTAAAATTTTCGAATTTT--------TATTCCAAAA---CTAA---TTTCAGCTTCTACAGCTTTTCC---TGGAGAGGCGAGTTGTTCATCTGAAACGCC---------------------
s cb4.chrX              21314728 145 - 21540570 GTC-----------AAGAACCACTAGCGAACAAC--CAGCTACCACTGAAGGTGAGTATAGAACAG---CGACGGTTACA--------TAGAATGAAT---ATATATGTTTTAGCCGCTCCATCTACATCTGCTGGCAACACTGGGTTTGCACCAGGACTGCAAAGTGATTC------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   644919 151 -  1162296 GTCCAGAGAGCCCAGAGAACCA--AGGGAACAAC--CCACTGACACTGAGGGCAAGTTCCAACT--------CGGTTTCAGCATTCTCTGAAACAAACCCAACAAAACTTTCAGCTGTACCTTCAACATC---------AACTGGATTTGCTCCAGCTCCGGACACCGGCGC------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     69997  85 +   118955 ---------------------------------------------------------------------------accca--------aaaaatggaa---gca----TTTCTGTGGCTTCAGCAGAACC---------AACCAATCTTTCTTCAACACAGCCTACGGAGGCCCAGCCTTCTGT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       151847  61 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-17054.000000
s ce10.chrX               917305 248 + 17718866 AAAACGGCCAAAAGTGAAACGAATTCCTCAAAAAGTGCAAATCGAATCGAATACTACA------------GCTTCAACGACACAAAACTCTGGAGTAAGGGTGGAACGG-GAGCTAGCTGCTGAGAGACCAACTGTACAAGACG------CCAATTTTCACAGGCACGAAG------AGGAAGAGAGTGAGTGAAAAACGTGCTGAAAAAGGGCAAAAGGGGATGTATTTTCGCAAATTTTACTCGAACTTTCTCACTTCTAACTCAAATGTT------------------------
s cb4.chrX              21314873 200 - 21540570 CAAACGAACAGCGGTGAAACGTATTCCTCAGAAAGTCCAAGTTGAGGAGGCTCCTCCA------------GCTGCTAGAAATCAGCCGCAAAATGTCAGGATTGAACGACGTACCCCTG-------------CAGTACAATTAGAACATCTCAACTACCCTCGCCATGATGATTACCAGGAAGAAAGTAAGTTTCAGTCGAATTATG----------------------------AATATGA-------------------AACTGAAATAA-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   645070 214 -  1162296 CAAACGGGCAAAAGTGAAAAGAGTCGCCCAAAAAGTGCAAATCGAGACGCAATCCACA------------AGTCAGGGAGAGGGTTCTGGAGGAGTTAGAGTGGAAAGA-GTGCCAACG---------AGACCGGTTCAGCAAGAGCCACCAATGCAACAACATCACGATGATTTCCAGGAAGAAAGTAAGTCTT--TTAAATTATGTCGGGATTGC----------------TAATTTCCA-------------------AACTTGCAAAAT------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     70082 139 +   118955 TAAACGAccaaaagtgaaaagaatagCCCAAAAAGTGCAAGTCGAAACG---GCTCCATCTGCCAACAATGTCAATGAAGGGGAAACTTCGACCGCTAGagtagaaaga-ga--------------------------------------------------------aagagtacCAA------------------TTGTACCAGGACAGGCCTAT--------------------------------------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       151908 257 +   783054 -AAAACAACGAAAGTCAAGAGGATTCCACAAAAAGTCCAGATAGAAACAAACGTTTCA------AGCAACCCCAATCAAGGAGAGACTCCAGTGGCCAGAGTAGAAAGG-GAAAGACAA---------CCAATTGTTAACGTGGAGCCAGTTCAGTATGTTCGTCATGAAGACTATCAAGAAGAAAGTGAGTG----GGGGACtgggaaatgtttttgaagggggagggaagtgaaaaaaga-------------------agtctgAATATTCTcatatgaatcgattcaaatgct
i caePb3.Scfld02_62     I 61 I 88
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-6720.000000
s ce10.chrX               917553 37 + 17718866 TTTTCTTGACAGCACAAAACGAA--AATATTGCCGTCTA
s cb4.chrX              21315073  8 - 21540570 ---------------TACTTCAA----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   645284 20 -  1162296 ---TTCGGTCCGGTTTGCGTCGA----------------
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold412     70221 14 +   118955 -----------GCACGACATGAAGA--------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       152165 88 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=851.000000
s ce10.chrX               917590 15 + 17718866 CGTTCGGTATCGAAA
s caeRem4.Crem_Contig24   645312 13 -  1162296 --TCCGGagtcaaaa
i caeRem4.Crem_Contig24 I 8 I 8
s caeSp111.Scaffold412     70235  9 +   118955 ------GTATCAAGA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       152165 88 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21315081  0 - 21540570 C

a score=0.000000
s ce10.chrX               917605 40 + 17718866 TACCCCCTGCAATTTTCATTCGTTTTTTTTTCACTGTTTC
e caePb3.Scfld02_62       152165 88 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21315081  0 - 21540570 C
e caeSp111.Scaffold412     70244  0 +   118955 C
e caeRem4.Crem_Contig24   645325  8 -  1162296 I

a score=-2622.000000
s ce10.chrX               917645 40 + 17718866 AATTTTTCTCAACTTTTGAAGAGC----------AATGCCGCCCACTCAG
s caeRem4.Crem_Contig24   645333 29 -  1162296 ----------aatttttgaaaagtttttatcaaaaatag-----------
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold412     70244  9 +   118955 -----------------GGAGAGT----------AA--------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       152165 88 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21315081  0 - 21540570 C

a score=-30380.000000
s ce10.chrX               917685 200 + 17718866 CTGAATAT--------------ATTTTGT----TCATTTAAAGTTCAAAACTTTTCAGTTAATAGATTCAAGAAAGATCTCAAATAAACTTGCAAGCTTGCCACTTGCGCTAGTCACGAAAAAA--AGGATTTCTTCAATAACCCTCT-----GTTCATATTTTTTTTAACAATAATTTTTCATCTCTTCATATTTTGATAT--------GTTTTGCAACAAAAAAATGATTG
s caeRem4.Crem_Contig24   645362 170 -  1162296 tcaaaaatctcatGTACGCTTGAGATTTTATCGACAATCGAACATTGAAAACCTa--gtgaatg-----aaaaaaaaaatcaaaa----tttcaaattcttgtACTG----AAGCCCGAGCCGACCGGG---ACGGCAAAAAATCTCAACCCGGCC--------------------------GGTTGCCAGTCTACTAATTC--CAGTTTGATTTA-----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     70253  72 +   118955 ----------------------GTATTGT----TTGATTAAATC----TAGTTTT--GTT------------AGTTATGTTAAA---------------------------------------------------------------AAC---GCT--------------------------GCATAAAAATCTAATGATTC--------GTTTTA-----------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       152253 161 +   783054 Ctggaaat---------aattaaaatttt----tctctcaaaccgggagagtttt--ttcattg-------aaataacGTGAAAT----TTC--------------------AGGACGGGTAGA--AGG---TCTTTCATAACTTTGATC---GCTGgtatcttgcttcaaagtga-ttttcggatATGAATATATTTAATCAAAATTCTAATTTG-----------------
i caePb3.Scfld02_62     I 88 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21315081   0 - 21540570 C

a score=141094.000000
s ce10.chrX               917885 474 + 17718866  
s cb4.chrX              21315081 509 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   645532 524 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     70325 476 +   118955  
i caeSp111.Scaffold412  C 0 I 18
s caePb3.Scfld02_62       152414 494 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-5238.000000
s ce10.chrX               918359 29 + 17718866 AAGTATCATCAAAGTGTTTATTTAAAGTA---
s cb4.chrX              21315590 21 - 21540570 -----TAATCA-AACGCACCTTA----TTG-A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   646056 27 -  1162296 AAATATattca-gatgttttttt----tttca
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       152908 16 +   783054 -----CAATTACAACGTTCGT-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     70801 18 +   118955 I

a score=147130.000000
s ce10.chrX               918388 706 + 17718866  
s cb4.chrX              21315611 598 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   646083 628 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 28
s caeSp111.Scaffold412     70819 566 +   118955  
i caeSp111.Scaffold412  I 18 C 0
s caePb3.Scfld02_62       152924 912 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-6733.000000
s ce10.chrX               919094 27 + 17718866 TTGTCTGAAAAGTTTCTTCATAAAACC----------
s cb4.chrX              21316209 27 - 21540570 -----CTAGGGATTTG-----AAACGCCTGcaaaatc
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold412     71385 31 +   118955 AAACTGTAAAACTAAC--CAAAATAACATGACA----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       153836 28 +   783054 TAGTTCCATGAATATT-----ATTGGTATGTAA----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   646711 28 -  1162296 I

a score=44402.000000
s ce10.chrX               919121 107 + 17718866 TTA----TGTTCAGAATGATGAGAACTGGCCACTGGTTGGGGCAGTGATGATCAACTCGCCAGGGTTCGCTCCGCATAAAGGAATCAGTAAAAGGTATG-TACCCGATTTTT
s cb4.chrX              21316237  91 - 21540570 gtt----ttttaaGGACGATAGCAATTGGCCGTTAGTAGGAGCAGTAATGATCAACTCTCCTGGGTTCGCTCCGCACAAAGGAATTAGTAAGAGg-----------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   646739 108 -  1162296 TTG----GTTTCAGGATAGCAGTAGTTGGCCGTTGGTTGGGGCAGTGATGATCAACTCACCAGGCTTTGCACCGCATAAAGGAATCAGTAAAAGGTACTatacacaattttt
i caeRem4.Crem_Contig24 I 28 C 0
s caeSp111.Scaffold412     71416  95 +   118955 CTA----ATCTTAGGATGATACTACATGGCCATTAGTAGGAGCAGTGATGATCAACTCACCTGGTTTTGCTCCACACAAGGGAATTAGCAAGAGGTCAG-------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       153864  99 +   783054 CTGAGATATTTTAGGACGACCCCAGTTGGCCATTAGTTGGCACAGTGATGATAAATTCACCCGGATTCGCTCCACACAAAGGAATCAGTAAAAGGTTTG-------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-10381.000000
s ce10.chrX               919228 69 + 17718866 TCCTTAGTCTACCTACTGAAAAAACTGCTTGCTGTGGCATCAGCTT----CAGTTCATCTACTTTGATTCCTT
s cb4.chrX              21316328  2 - 21540570 --------------------------------------------tt---------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     71511 24 +   118955 -----------------ATAAGAACTGAATGCTATG-----AGCTT---------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       153963 19 +   783054 --------------------------TACCACTCTT-----CGATTATTT-----------------------
i caePb3.Scfld02_62     C 0 I 14
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   646847  0 -  1162296 C

a score=-875.000000
s ce10.chrX               919297 32 + 17718866 AGCAAATACTTTTAAAACGATGTTTATATCAA
s cb4.chrX              21316330  5 - 21540570 ---------------------------aacaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     71535 18 +   118955 --------------GACCAATTTCTGTACCaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       153982 14 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   646847  0 -  1162296 C

a score=-928.000000
s ce10.chrX               919329 39 + 17718866 TGTGAAAATACAGTAAAGGTTACATTTCGGTTTAATTAA
s cb4.chrX              21316335  7 - 21540570 ---gaaaaaa-----------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       153982 14 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     71553  0 +   118955 C
e caeRem4.Crem_Contig24   646847  0 -  1162296 C

a score=-2171.000000
s ce10.chrX               919368 39 + 17718866 AACAGATATTTTTGGAAAACCAAAGCTGAAATTTTTACA
s cb4.chrX              21316342  8 - 21540570 ----------------------------aaattttt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   646847 21 -  1162296 gatagacATATC------------acataaatt------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       153982 14 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeSp111.Scaffold412     71553  0 +   118955 C

a score=0.000000
s ce10.chrX               919407 81 + 17718866 AATCATTTGTAATTTGTATTAGTGGCCACATCCCACGAATGAGCAAATTCAAAACTTGGAAAACTAGCTAAACTAGCTGTT
e caePb3.Scfld02_62       153982 14 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21316350  0 - 21540570 C
e caeSp111.Scaffold412     71553  0 +   118955 C
e caeRem4.Crem_Contig24   646868  0 -  1162296 C

a score=51991.000000
s ce10.chrX               919488 123 + 17718866 CAAAAATTTAAAGAAATTAACAAGTTT--TACAGAATGGGCACTATAAACTTCATTATATCTTTGATCAAACGTCACAACAAAACCATCAACTCAATCCTTCATCCAATTTTGCATTATTGTAAG
s cb4.chrX              21316350 110 - 21540570 ---------------tttaacaaaattgGTTTAGAATGGGAGCTATCAACTTCATCATATCTTTGATCAAACGTCACAACCCAACAATCAACATGATCCTTCATCCAATTTTGCACTGGTGTACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   646868 104 -  1162296 -------------------aaaaaatt--ttcagaatgggtACTATAAACTTCATCATATCTTTGATCAAACGGCACAACAATACAATTAACGCAATTTTACATCCTATACTGCATTGGTGTGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     71553 104 +   118955 -------------------caaaaact--ttcagaatagGAACCATTAACTTCATCATCTCATTAATCAAAAGGCATAACACTGCCATCAATTGGATTCTCCATCCTATTTTGCATTGGTGTAAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       153996  99 +   783054 ------------------------ttt--ttcagaatgggaaCTATCAATTTTATTATATCCTTGATCAAGCGACACAACCCGACAATCAACATGATTCTGCATCCAATTTTACACTGGTGTAAG
i caePb3.Scfld02_62     I 14 I 17
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-561.000000
s ce10.chrX               919611 2 + 17718866 AT-
s cb4.chrX              21316460 2 - 21540570 -TT
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24   646972 2 -  1162296 -TT
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold412     71657 2 +   118955 -TT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       154095 17 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-2302.000000
s ce10.chrX               919613 14 + 17718866 ----------CCCCACCCCCTTCC
s caeRem4.Crem_Contig24   646979 14 -  1162296 ---------TCTTAGAAACtttg-
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold412     71659 20 +   118955 TGCCGGAGAACCTCGAAACC----
i caeSp111.Scaffold412  C 0 I 1
e caePb3.Scfld02_62       154095 17 +   783054 I
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21316462 30 - 21540570 I

a score=-3602.000000
s ce10.chrX               919627 18 + 17718866 CTCCAA--AGATTAATATA----A
s caeRem4.Crem_Contig24   646993 16 -  1162296 ----ag--taaaaaat-tattaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     71680 16 +   118955 TTTCAT--AAATGATT-TA-----
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       154112 18 +   783054 attcagaaaaaaaaac-ta-----
i caePb3.Scfld02_62     I 17 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21316462 30 - 21540570 I

a score=191475.000000
s ce10.chrX               919645 401 + 17718866 TATTTTAGTCTACAACAATCTCATCGGTTTGCGTGTTTCTCATGGAAAAGTAGCAGCCGCTGCAATTCTGCCTATGCAAACTTTTGCCTTTGACGAGCAAAAACTTTCAATTGACGATCTACGTGCAAAACCTGGAATTCGCGCGTTCTATGGTTACGGATCTAAGGATTTTTTAATTGATGAGCATCAATCGGAAGAAGTTGCGATGTACTTTTCTGAAGAAGATCATTATGTAATTTCCAACAAACAAGACGCGGAAAAAGCTATTAAAGAAGCCAGGAAAAGCTTTACAACTGGAAAACAATTTGTCACAGCAAACTTCAAAGAAGAAGGTCACTTTCTGCAGAAGACATATCCCGAGTTTATTGTAGAAGTTGTGGATTCTATTTTTGATGCTGACA
s cb4.chrX              21316492 401 - 21540570 TGTTTCAGTTTACAACGATGTTATTGGTCTTCGAGTGTCCCACGGTAAAGTTGCCGCTGCCGCCATTTTACCTATGCAAACGTTTGCCTTTGacgaacaaaaattgaatatcgATGACTTGAAAAATAAGCCAAATGTACGAGTGTTCTACGGGTATGGCTCGAAAGATTTTCTTATCGATGAGCATCAATCAGAAGAAGTTGCCatgtatttttcgaataagAATCACtatattatcaaaaacaaggacgatgcagaaaaagcgaaacaaaaaatacaggaaaatatcaaaTCTGGAGACCAATTCATCACTGCCAACTTCACGAATGAAGGTCATTTTCTGCAGAAGACTTATCCAGAGTTCATTGTCGACGTAGTGAATGTGTTTTTCGATGCTGACA
i cb4.chrX              I 30 I 8
s caeRem4.Crem_Contig24   647009 400 -  1162296 -tattCAGTTTACAACAACGTTATCGGTCTCCGCGTTTCTCATGGAAAAGTCGCAGCTGCCGCTATTTTGCCGATGCAAACATTTGCGTTTGACCAGCAGAAACAATCAATTGATGACCTGAGACAAAAACCAAGGATTCAAGTATTCTACGGTTATGGTtccaaagattttttgattgatgagCACCAATCTAACGAAGTCGCCATGTATTTCGCCAAAGACAATCACTTCGTGATTACGGATAAAACAGCAGCTGAGAAGGCTAGTCAAGAAGTGCGGAAAAGTTTCAATGCGGGAAGAAAGTTTGCTACTGCTAACTTTACAAAAGAAGGGCATTTCCTGCAGAAGACATACCCACAGTTTATTGTCGAAGTGGTAGATTCAATGTTTGAGGCAGATA
i caeRem4.Crem_Contig24 C 0 I 11320
s caeSp111.Scaffold412     71696 401 +   118955 ATTTACAGTTTACAACAACATTATTGGTCTTCGAGTATCTCACGGTAAAGTTGCTGCAGCAGCTATTTTACCAATGCAAACTTTTGCTTTTGACCAGCAAAAACTCTCGATTGATGACATTCGCCAAAAACCACGAATCCGTGTGTTTTACGGCTATGGATCAAGAGATTTTCTTATTGATGAACATCAATCAGAAGAAGTGGCCATGTATTTTTCCAAAGAAGATCACTTTATAATTTCCAACAAAGAAGACTCcgaaaaaagcaaagttGCTATGAGACGCAGCTTCATCTCGGGCAAAAAATTTGTAACGGCAAATTTCACGGAAGAAGGacatttccttcaaaaaacttaccCTGATTACATTGTAGAAGTTGTAGATTCAATGTTTGACTCAGATA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154130 401 +   783054 tatttcagTTTACAACAATGTTATCGGACTTCGGGTTTCACATGGAAAAGTTGCAGCCGCAGCGATTCTCCCAATGCAAACGTTCGCTTTTGATGAGCAAAAGTTATCAATTGAtgatttgaaaggaaaaagaagaattcgaGGATTCTATGGTTATGGCTCCAAAGATTTTCTTATTGATGAACAACAATCAAACGAAGTTGCCATGTACTTTTCCGAAGAAAATCATTATGTGATTTCGTGCAAGGAAGAtgccgaaaaatcaaaaagtgtcatGAAGAAAGCTTTCGCTGATGGAACAAAGTTTGTTACCGCCAACTTCACGGAAGAAggtcattttttgcaaaaaacgtATCCAGAATATATTGTCGAAGTAGTAGATGCAATGTTTGAGTCGGACA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=-37753.000000
s ce10.chrX               920046 141 + 17718866 --------------------------------------------------------------------------------------------------------------------AAGAAGTCGATACCAA---A--ATTTAGATGCATGTGTAAAT---TTAGATCATATAGTTTGATGGATAGAATTATGAATTTC----------GATTGTTACTCTCTGT--------------GTGCCTTGCCAGCAAGTTGATAAACTGGTACTT-------------TAGAATATGAAAAAGTG-------------------
s cb4.chrX              21316901 281 - 21540570 GAGAAatagtatttttttaattaccaTGTTTCTTGAAATACATCTCATCGTTATCAAAATAAATTATAACATTGTCTTTGTTTCTGACTATACGTTTaaaaaaaGTATACTCCTCagataaatcgatttttt---aacaCATTTGCTCATTTAGAAGTTTACTGAAACAGGAATTGAAATAGCTAAACTCATTCAAAGTTTAATATAAAAAG-----TTTCCGGTTTAATAT---AAAACTTTCATT---GCAAATCA-----CTGAAACTTC--ATCAAATATACAAAATATGACAAAGCG-------------------
i cb4.chrX              I 8 I 32
s caeSp111.Scaffold412     72097 219 +   118955 -----------------------------------------------CCG-------GTtaaatttgaa---tgttttagattttgataggatttttctgttaaa-----aCTGCCGTAGGATCATCGCCGT---A--ATATTTACCAttaaataaatgtttttg---------aaaattgtataTTGTTGTTCATTTT----------AGGTATCACTTTTTGTATAATAGTTTACAAGTGTTTTG---GGAAGAAAGGCTATTTTAACTTCTGCTCTAGTCT-CACAAGTTCCAAAAGAGCACTCT------------A
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154531 233 +   783054 -----------------------------------------------TTG-----AAAATAGATTATCG---TGATTGAGATTGCCACAA------TCAATTAGG-----TCTTGaatataattgtttttatttga--atttttgattgttagaaaatattttttagtattttcaaaagtgtcgagttttatGTATGTTTCAATGAATGAGTTATc-tttcttgttcaa------aaaattgcctaG---GGTAGAca---------aatttcgaagtttttat-CACGATTCTATAAAAAGTCCTATGTTTCCAGAGAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e caeRem4.Crem_Contig24   647409 11320 -  1162296 I

a score=-301.000000
s ce10.chrX               920187 8 + 17718866 ATT-TTTTT
s caeSp111.Scaffold412     72316 8 +   118955 AAT-TATTG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154764 9 +   783054 AGTGTGTTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21317182 32 - 21540570 I
e caeRem4.Crem_Contig24   647409 11320 -  1162296 I

a score=-12483.000000
s ce10.chrX               920195 33 + 17718866 --------------------------------------------TTAAT--------------TGACAACAATTCATTCATGTGCATTCAA--
s caeRem4.Crem_Contig24   658729 24 -  1162296 --------------------------------------------TTAAC--------------AGACAGAAATGC----------AATTTAT-
i caeRem4.Crem_Contig24 I 11320 C 0
s caeSp111.Scaffold412     72324 48 +   118955 TTAAGCaat-----acaaaaa---tgaatttagt-----ACAAATTCAT---------------Gaca-----------------acttcatt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154773 86 +   783054 ATAATCTATTTTCGACAAAACGATCAAATTGtgtgaacaaaaaactcatacTGCCGaccaaaaagacaaaaatgaa-------acattttata
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I
e cb4.chrX              21317182 32 - 21540570 I

a score=22750.000000
s ce10.chrX               920228 78 + 17718866 -TTTTCATCACAATAACAAGA----ATAAGCGATATGAGATTCTTAACCAA-TTTGAAAGACTAGTAAA--TACCTAA-CCGGACTC
s cb4.chrX              21317214 78 - 21540570 -TGATCATCACGACAGTAACAATAAACAA--GATATGAGATTCT--AAAAAGTATGAAAGACTAGCCAA--CAGC-AA-ACTGACTC
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig24   658753 67 -  1162296 -TCATCATCACG-------------ATAA--GATATGAGATTCT--ACCAAATATGAAAGACTAGCAAAATAAGC-GA-ATTGACTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     72372 73 +   118955 ttcttcatcacaATAAAAAAC----AT----GATATGAGATTCT--ACCAA-TGTGAAAGACTAGTAAA--TGGCTGA-ACAGACTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154859 75 +   783054 tt-ttcatcaCAATAGCGAAC----ATAA--GATATGAGATTCT--ACCAA-TTTGAAAGACTAAAAAA--CAACTAATAAATACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    88136 70218 -   161274 I

a score=176625.000000
s ce10.chrX               920306 189 + 17718866 AATGGATTCCATTTGTGTAATATTGAAACGAGTCGTAAAACCGTGTTGTGTAACTATCCCGAGAACCTTCTACAAGCGTGTCGACGAGTTGTTGGAGCTGCTCGTCAGTGCTGCTTACATGGAATCTAGCTTCTAGAGCTCGAACAGTCTCTGCGCCAGCACGGAAGCATTGCATTTTTGATCCTG-AAA
s cb4.chrX              21317292 189 - 21540570 AATGAATTCCATTCGTATAGTATTGGAATGAATCGTAAAACCGTGTTGTGTAACTATCTCGAGAACCTTCCACAAGAGTGTCGACCAGTTGCTGGAGTTGTTCATCAGTACTGCTGACATGGAATCGAGCCTCCAGTGCACGAACTGTTTCACGCCCAGCCCGAAAACACTGCATTTTGGATCCTG-TAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   658820 189 -  1162296 AATGAATTCCATTAGTATAATACTGGAATGAGTCATAGAACCGTGTTGTGTAACTATCCCGGGAACCTTCCACGAGAGTATCGACCAGTTGTTGGAGTTGTTCATCAGTGCTGCTCACATGGAATCGTGCCTCGAGTGCTCGGACTGTCTCGGCTCCAGCGCGGAAGCATTGCATTTTGGAACCTG-AAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     72445 188 +   118955 AATGAATTCCATTCGTATAATATTGAAATGAGTCATAAAACCGTGTTGTATAACTATCGCGAGAGCCCTCCACAAGCGTATCAACAAGTTGTTGTAGCTGCTCATCAGTACTGCTCACGTGGAAGCGTGCCTCCAAAGCGCGCACTGTTTCAGCTCCAGCACGGAAACATTGCATTTTCGAACCTG--AA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       154934 190 +   783054 AATGTATTCCATTCGTATAATATTGGAATGAATCATAGAACCGTGTTGTATAACTGTCGCGAGAGCCTTCAACAAGTGTGTCCACAAGCTGCTGAAGTTGTTCATCAGTACTGCTAACATGGAATCTGGCTTCGAGTGCGCGAACTGTCTCATGGCCAGCACGGAAACACTGCATTTTTGACCCTGTAaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    15718 189 +   161274 AATGAATACCATTTGTGTAATATTGGAAAGAATCATAAAAACGGGTGGTATAATTATCACGAGATCCATCTACTAGAGAGTCAACTATTTGTTGAAGTTGTTCATCTGTACTGCTTATGTGAAATCGTGATTCTAATGAGCGAACTGTTTCAATTCCAGCCCGAAAACATTGCATCTTTGAACctg-aaa
i caeJap4.Scaffold17495 T 99786 I 24

a score=-4198.000000
s ce10.chrX               920495  1 + 17718866 C-------------
s cb4.chrX              21317481  1 - 21540570 C-------------
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24   659009  1 -  1162296 T-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     72633 12 +   118955 T--agattcatttc
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       155124 14 +   783054 tcgaaatttatttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    15907 24 +   161274 I

a score=-780.000000
s ce10.chrX               920496 3 + 17718866 TTT-
s caeRem4.Crem_Contig24   659010 3 -  1162296 ATT-
i caeRem4.Crem_Contig24 C 0 I 35
s caeSp111.Scaffold412     72645 3 +   118955 -ttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       155138 3 +   783054 -ttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    15907 24 +   161274 I
e cb4.chrX              21317482 30 - 21540570 I

a score=-269.000000
s ce10.chrX               920499 18 + 17718866 TTTAGTTAATTATCAAAC--
s caeSp111.Scaffold412     72648 20 +   118955 ttcaatcaaactTATAACAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       155141 17 +   783054 ttt-ctcaatattcaAAC--
i caePb3.Scfld02_62     C 0 I 4
e caeJap4.Scaffold17495    15907 24 +   161274 I
e cb4.chrX              21317482 30 - 21540570 I
e caeRem4.Crem_Contig24   659013 35 -  1162296 I

a score=319.000000
s ce10.chrX               920517 7 + 17718866 AACTGAA
s caeSp111.Scaffold412     72668 7 +   118955 TGCTGAA
i caeSp111.Scaffold412  C 0 I 3
e caePb3.Scfld02_62       155158 4 +   783054 I
e caeJap4.Scaffold17495    15907 24 +   161274 I
e cb4.chrX              21317482 30 - 21540570 I
e caeRem4.Crem_Contig24   659013 35 -  1162296 I

a score=0.000000
s ce10.chrX               920524 718 + 17718866  
e caePb3.Scfld02_62       155158   4 +   783054 I
e caeJap4.Scaffold17495    15907  24 +   161274 I
e cb4.chrX              21317482  30 - 21540570 I
e caeSp111.Scaffold412     72675   3 +   118955 I
e caeRem4.Crem_Contig24   659013  35 -  1162296 I

a score=68.000000
s ce10.chrX               921242 3 + 17718866 AAA
s caeJap4.Scaffold17495    15931 3 +   161274 aac
i caeJap4.Scaffold17495 I 24 C 0
e caePb3.Scfld02_62       155158 4 +   783054 I
e cb4.chrX              21317482 30 - 21540570 I
e caeSp111.Scaffold412     72675 3 +   118955 I
e caeRem4.Crem_Contig24   659013 35 -  1162296 I

a score=409.000000
s ce10.chrX               921245 3 + 17718866 AAC
s cb4.chrX              21317512 3 - 21540570 AAA
i cb4.chrX              I 30 C 0
s caeJap4.Scaffold17495    15934 3 +   161274 aaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       155158 4 +   783054 I
e caeSp111.Scaffold412     72675 3 +   118955 I
e caeRem4.Crem_Contig24   659013 35 -  1162296 I

a score=-496.000000
s ce10.chrX               921248 3 + 17718866 -CTC
s cb4.chrX              21317515 3 - 21540570 -CTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659048 3 -  1162296 -CTC
i caeRem4.Crem_Contig24 I 35 C 0
s caePb3.Scfld02_62       155162 3 +   783054 -CTA
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold17495    15937 3 +   161274 att-
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     72675 3 +   118955 I

a score=119603.000000
s ce10.chrX               921251 138 + 17718866 ACCTGCAGACATAATTTCAGCGAGCGATACAATCCGTCGGTGGTGTTTTCTCGCTGCCATTAATCCACGGAGTAGCAAACTTTTGAAATACAGAAACATGTCGCTGTCGATCCCACCCATCACATCAACTG------GAGTTAA
s cb4.chrX              21317518 139 - 21540570 ACCAGCAGACATAACTTCAGCAAGTGAAACAATTCGACGATGGTGTTTTCTGGCAGCCATAAGCCCACGGAGCAGTAAACTTTTATAGTAGAGGAACATGTCGCTGTCTATTCCACCCATAACGTCAACTG-----TAACATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659051 139 -  1162296 ACCCGATGACATGATTTCAGCAAGAGATACAATACGACGATGGTGTTTTCTGGCAGCCATGAGTCCCCGGAGCAGCAAACTCTTGAAATATAGGAACATATCACTGTCTATTCCTCCCATCACatcaactg-----aaatttga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     72678 141 +   118955 ACCTGTTGACATTATTTCAGCAAGCGAAACAATCCGACGATGATGTTTTCGTGCAGCCATAAGCCCACGAAGCAGCAAACTTTTGTAGTAAAGAAACATGTCACTGTCGATTCCACCCATCACATCAACTG---GAATACTTGT
i caeSp111.Scaffold412  I 3 C 0
s caePb3.Scfld02_62       155165 144 +   783054 ACCTGTTGACATAACCTCAGCAAGTGATACAATTCGACGGTGATGTTTTCGGGCAGCCATAAGTCCTCGAAGAAGCAAACTCTTGTAATAAAGGAACATATCACTGTCAATACCTCCCATcacatcaactgaaaaaaaatcaga
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    15940 138 +   161274 accaGTGGACATTATTTCAGCTAGCGAAACAATACGGCGATAATGTTTTCGTGCTGCCATGATTCCACGCAACAGCAAACTTTTGTAATATAGAAACATGTCACTATCGACTCCGCCCATTACTTCTACTG-----AAATCAA-
i caeJap4.Scaffold17495 C 0 I 104

a score=340548.000000
s ce10.chrX               921389 531 + 17718866  
s cb4.chrX              21317657 531 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659190 514 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     72819 506 +   118955  
i caeSp111.Scaffold412  C 0 I 80
s caePb3.Scfld02_62       155309 516 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    16182 615 +   161274  
i caeJap4.Scaffold17495 I 104 C 0

a score=91.000000
s ce10.chrX               921920 1 + 17718866 A
s caeJap4.Scaffold17495    16797 1 +   161274 A
i caeJap4.Scaffold17495 C 0 I 26366
e caePb3.Scfld02_62       155825 0 +   783054 C
e cb4.chrX              21318188 0 - 21540570 C
e caeSp111.Scaffold412     73325 80 +   118955 I
e caeRem4.Crem_Contig24   659704 0 -  1162296 C

a score=-13802.000000
s ce10.chrX               921921 73 + 17718866 AAAAAAAAGAAAATAAAGTTTCAATTTCTAAATAAAGGTACCGGCTCAACAGTCTTACGTGCATTATATCCCA----------------
s cb4.chrX              21318188 37 - 21540570 AATTTGTTGGGCG----------ATTGTTAGA--------------------------ACTGATTATTTGCAA----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659704 83 -  1162296 aaaattttagaagtGAA--CTACACTGACAGATTTAGTTTACAA---AGACGAGTTACactaacaattttcagtgata-cACCGACAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       155825 36 +   783054 ----------------------------------------------------aaatacattgaaaatttccaacaaaagTTTCTTCAA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    16798 26366 +   161274 I
e caeSp111.Scaffold412     73325 80 +   118955 I

a score=-9335.000000
s ce10.chrX               921994 12 + 17718866 -------------------------------------------------------AGTCTTACACTA
s cb4.chrX              21318225  4 - 21540570 ---------------------------------------------------------------ATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659787 67 -  1162296 ATTTTTGCACTGCGACCAGTACACTGACAAATGCACCAACCATAACAATTCAATCAAATAAACACTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     73405 12 +   118955 -------------------------------------------------------AATCTATAACCC
i caeSp111.Scaffold412  I 80 C 0
s caePb3.Scfld02_62       155861  7 +   783054 ------------------------------------------------------------AGTACTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    16798 26366 +   161274 I

a score=169045.000000
s ce10.chrX               922006 194 + 17718866 ACCTTAAAAGTAAACAAAAGTTGCTGTGCAAACGCTTCCTGAGAAAGATCGTCTCCGGTCTTCACAATTACAGGAATCAAATCCCATTTCTGATGATTCTCATAACGACTCGAACCTCGAATTCGAGCCTTCTTCTCCGCCCAAGACTCGGCAAACACTGCAATCGATGGATCCGTCGAGTCGTGGTAGCTCTG
s cb4.chrX              21318229 194 - 21540570 ACCTTAAATGTGAAAAGAAGTTGTTGAGCAAATGCTTCTTGTGATAAATCGTCGCCAGTTTTTACAATAACTGGAATCAAATcccatttttgatgattttcgtAACGACTGGATTCTCGGATTCGCGATTTTTTCTCTGACCAAGGTTCAGCAAAAACAGCAATAGATGGATCTGTTGAATCGTGATAACTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   659854 194 -  1162296 ACCTTGAATGTAAACAACAGTTGTTGAGCAAATGCTTCTTGTGAAAGATCATCGCCGGTTTTGACTATAACTGGAATTAAATCCCATTTCTGGTGGTTTTCATATCGACTTGATCCTCTAATCCGAGACTTCTTTTCCGCCCAAGACTCGGCAAAAACTGCAATCGAAGGGTCCGTTGAGTCGTGATAGCTCtg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     73417 194 +   118955 ACTTTGAAAGTGAACAAAAGCTGTTGTGCAAAAGCTTCTTGTGATAGATCATCACCAGTTTTTACAATAACCGGAATCAAATCCcaattctgatgattttcaTAGCGACTTGATCCCCGAATACgtgattttttctctaaccACGACTCCGCAAAAACTGCAATCGAAGGATCCGTTGAGTCGTGATAGCTCTG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       155868 194 +   783054 ACCTTGAACGTGAACAACAGCTGTTGAGCGAACGCCTCCTGTGACAAATCGTCTCCTGTTTTCACAATCACTGGAATCAAATCCCACTTCGAATGGTTTTCATAGCGGCTGAATCTTCGGATACGTGATTTCTTTTCGGACCAAGACTCAGCGAAAACAGCGATTGAAGGATCCGTCAAGTCGTGATAGCTCTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   158354 194 -   161274 ACCTTAAAAGTGAACAGAAGCTGCTGGGCAAATGATTCTTGCGACAAATCATCTCCTGTTTTGACAATAACGGGTATCAAATCCCAGTCCGGACAATTTTCAAACCGGCTTGACATTCTTATTCGACGTTTCTTTTCCGTCCACGACTCGGAAAAAACTGCTAACGACGGATCAGAATTGTCGTGGTACATCTG
i caeJap4.Scaffold17495 I 70218 I 1408

a score=20961.000000
s ce10.chrX               922200 146 + 17718866 A----------ATTCAGAATGACAGTT---CAAATACAAAAT-----TGGTGGATAACTCACTTTATTTTTCAGAAGAACACTCTCACTTTGTGATTTTTTGATTCTTGGCTCGACTGATGATAGTGTCTTGAT------GTTGGAGTTGTAGTTTGGAGACGAACGAAT
s cb4.chrX              21318423 105 - 21540570 G-----------------------------------------------------------------TTTTTCATCAATATATTATTGCTGGCGGAATGcttcagtttttgattcagAGAGGTTGCCGTTTTAATGTTACAATTAGAGTTATAGTGGGGTGAGGATCGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   660048 145 -  1162296 aaattacagtaatcaaGAATAATATGTACTCGAGTTGCAGTA----------------TTACCTTGTTTTTCAGCAAGATACTCTCACTTTGCGatcttttcatcttttgatcCAACGATGCAGGTGTTTTGACGTT---------GTTGTAATGGGGTGAAGACCGAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     73611 147 +   118955 A------------------CAAAAGTTGGTTAATTTACAAAT-----ATGTTAATAACttactttattttttagtaGAATGTTTTCGCTCTGtgactttttcattcttggTTCCAAGCatgaatttgttttgatgTTAGAATTGGAGTTGTAATTAGGTGAAGAGCGGAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       156062 144 +   783054 --------------------aacattttcatgatttgAAAGTTataatttctgatttcttactttatttttttgaaggatacTCTCGCTCTGTGATTTTCTGATTCCGGGGTCCAGCGATGAACTCGGTTTGAT------ATTGGAGTTGTAGTGCGGTGTAGATCGAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   158548 1408 -   161274 I

a score=22037.000000
s ce10.chrX               922346 24 + 17718866 CACTTCCGCAAAGAACACGTAAGG
s cb4.chrX              21318528 24 - 21540570 GACTTCAGCGAAAAACACATATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   660193 24 -  1162296 AACCTCTGCGAAAAACACATATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     73758 24 +   118955 CACTTCGGCAAAAAACACGTACGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       156206 24 +   783054 CACTTCAGCGAAAAATACATAAGG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   159956 24 -   161274 CACTTCCGCAAAAAATAGGTAAGG
i caeJap4.Scaffold17495 I 1408 C 0

a score=-20929.000000
s ce10.chrX               922370 103 + 17718866 TACCTGAAAATCAAAAATTGTGAAAGACTGGTTGGTGATAATAAGAAACGTTTAGCAAAAAATTATTTGGACTAAACTTTCCGAAATCAAAATTTAAACCACT
s cb4.chrX              21318552  48 - 21540570 CACCTGAA-----CACA---AGAAa---ctattgcaaaaaaaactaagcATGTTTC--------------------CTT------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   660217  49 -  1162296 CACCTGGA-----AACATTGCGATA---TGATTTTCAAGGGAAATAATCAAGTTAC----------------------G------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       156230  45 +   783054 GACCTGGA-ATTGcaaa---tgttg---ttgttgtagagAGGCCGAAAAACT---------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   159980  47 -   161274 -------------------------AACCTGTTACGAATATTAAAACACATTTTCTCAACTATTAAAAGCAT-------------------------------
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     73782   0 +   118955 C

a score=170556.000000
s ce10.chrX               922473 244 + 17718866 CACCTTATCTTTACTATTCAACACAGCACTCTCATTAACACAAATATTGAACATTGTGTTCTCAAAATCAAATGGAATCCACACCGAGTTGGGCAGCATTGAATTCAGCATGCTAAGCTCTGATTGAAGCGCGATCGTTTTTTCCTGTTTAGAACTTAGCAAATGATGCTCTGTGAGCTTCACTCCAATATAGACAAGGCGACCGATAAAGTTCTGTTGGTTGGTGAGAAGTTTCTAAAAAATA
s cb4.chrX              21318600 234 - 21540570 CACCTTCTCCTTACTGTTTAATACCGCACTTTCGTTAACACAAAGATTGAAAATTGTGTTCTCAAAGTCAAATGGAATCCAAACCGAGCTTGGAAGCATGGAATTCAGCATGTTCATTTCAGAGTGTAATGCAATTGTTTTCTCCTGTTTTGAGCTGAACAAATGCTGCTCCGTCAGCTTCACACCAATGAAAACCAGTCTGCTGATAAAATTCAACTGATTGTTGAGAAGTTG----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   660266 244 -  1162296 CACCTTATCCTTGCTATTCAACACTGCACTTTCATCAACacaaatgttgaaaatcgtATTCTCAAAGTCAAATGGAATCCACACTGCTGTAGGCAGCATAGAATTCAACATATTCAGCTCTGATTGTAACGCAATTGTCTTCTCTTGTTTCGAACTGAACAAGTGTTGTTGTGTCAGTTTTACACCAATAAACACAAGTCGGCCGATGAAGTTTTGTTGATTCGTCAggatttgctgaaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     73782 244 +   118955 CACTTTATCCTTACTGTTGAGCACAGCACTTTCAGTGAcacaaatattgaaaatcgTGTTTTCAAAGTCAAATGGAATCCAAACAGAACATGGAAGCATTGAGTTCAACATATTCAACTCTGACTGCAATGCAAtagttttttcctgttttgaACTGAATAGATGATTTTCTGTCAGCTTGACACCAATAAATACAAGACGACCAATAAAGTTTTGTTGATTGATGAGAAGTTGCTGAAAGTAA
i caeSp111.Scaffold412  C 0 I 8
s caePb3.Scfld02_62       156275 242 +   783054 TACTTTATCCTTACTATTCAGCACGGCACTCTCTTTGACACAAATGTTGAAGatagtattttcaaaatcaaatggGATCCAAACGGAAGACGGCAACATTGTATTCAACATATTCAATTCGGATTGTAGTgcaatagttttttcttgttttgaactGAATAAGTGGTtttctgtgagtttttctCCGATGAAAACCAAACGTCCGATGAAGTTCTGTTGATTGGTGAGGAGTTGCTGAAA--AA
i caePb3.Scfld02_62     C 0 I 271
s caeJap4.Scaffold17495   160027 242 -   161274 -ACCTTGTCTTTGCTATTAAGTACAACTGACTCGCTCACGCAAATATTTAAAATAGTGTTCTCAAAATCGAAGGGAATCCACACAAAACTAGGCAGAACCGAATTAAGCATTTTTAATTCTGATTGAAGAAAAGtgtttttctcttgtttcgAACTTAAAAGATGAATTTCCGTCATGCGTGTCCCGATCCGAATCAGCCGATCAATAAATTTACTTTGACAAGATACCAACGtcttaaaaaa-
i caeJap4.Scaffold17495 C 0 C 0

a score=-2313.000000
s ce10.chrX               922717 25 + 17718866 GTAGCATACCGGTGAAATTTG---ATCA
s caeRem4.Crem_Contig24   660510  4 -  1162296 ------------------------ttca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     74034 28 +   118955 ATTGTATGATTTGAACgtcagtttttaa
i caeSp111.Scaffold412  I 8 C 0
s caePb3.Scfld02_62       156788 28 +   783054 gtaGCAGACTTCTGATGTTTGGTTCTCA
i caePb3.Scfld02_62     I 271 C 0
s caeJap4.Scaffold17495   160269 25 -   161274 gttttatattTCTCGAATTCG---GTCA
i caeJap4.Scaffold17495 C 0 T 45908
e cb4.chrX              21318834  0 - 21540570 C

a score=-4947.000000
s ce10.chrX               922742 137 + 17718866 TTTTTTA---------------------------------------------------------------------------AACCTACCGTGCTGATGGGACCACAACGAGATTTTTCATATGAATCATGCTCCGCTGT-TAATGT---GGACTCTTTCTGGATCGCAGCCCGTGCAAGTGCTCCAGCGCTTTTACCGTAACTTGAGCCTGAAA-A
s cb4.chrX              21318834 116 - 21540570 -----------------------------------------------------------------------------------------AGATGTGACTGGGCCAAAACGAGGTTTTTCGTACAAAT-CAACGTCAGATGAAAGAGTCGAAGAT--GCATGATACGTCGAAATG-------CTCCCAGTGTTTCTCCCGTAATTGgatcctgaaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   660514 158 -  1162296 tgtttcag------------------------------aGAACATTACCAGT----------------AA-A----------CTCATACCGAGCTGATCGGTCCGTAACGGGGTTTCTCATACGAGTCCAGTGTCGCATT-GAGAGCTGTCGACTGACTTTGCACCTCCGAATGATAGAAATTCCCGTTGTATTTGCCATATGTCGAACCTGGAAC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     74062 200 +   118955 tttttctaatcgAAAATTACTTTTGCCATGAAAAAATCGCTGGATTTTTAATTCCTGAGAtcttctaaaataaaaaacgaatcACTTACGGTGTTAATAGGACCATAACGAGGTTTTTCGTATGATTCAATTGTTGCAGA-AAGTGTCATGGATTGATTTTGTACA---------------CCACCGATGTTATTCCCGTATCTTGAACCTGCAA-A
i caeSp111.Scaffold412  C 0 I 19069
s caePb3.Scfld02_62       156816 137 +   783054 TTTT----------------------------------GTTGTACTACCAAT----------------AATA----------CACTCACAGTATTAATAGGCCCGTAACGAGGTTTTTCATAAGAATCCAGAGTAGTGGT-CAGTATAGTAGATTGGCTCTGGGCA---------------ACAACGGTGTCAAT---GTATTTTGCgcctgaaa-a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=-738.000000
s ce10.chrX               922879 4 + 17718866 ATGA--
s caeRem4.Crem_Contig24   660672 4 -  1162296 --AAGA
i caeRem4.Crem_Contig24 C 0 I 1063
s caePb3.Scfld02_62       156953 2 +   783054 --aa--
i caePb3.Scfld02_62     C 0 I 466
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21318950 0 - 21540570 C
e caeSp111.Scaffold412     74262 19069 +   118955 I

a score=0.000000
s ce10.chrX               922883 8 + 17718866 TGGAGTTG
e caePb3.Scfld02_62       156955 466 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21318950 0 - 21540570 C
e caeSp111.Scaffold412     74262 19069 +   118955 I
e caeRem4.Crem_Contig24   660676 1063 -  1162296 I

a score=-7352.000000
s ce10.chrX               922891 446 + 17718866 AAGCACACAACAAAAaccataattcctgaatttgtcttgcatgcaaaactattttttgcttagtcagtaagggGGATCAAGCGTCTCATAGTTTTAAAATGTAATCGATGTATAAGAATCAATGTATGAAAATTATTCTACAAGCGGTATGTAAGCACTAGCTGTTTTTCTCAAAAAAAAATCGATGTCATCAATTATATTCTACAAAATACAAGTTAtagggttattcaaatagcgtcggaaatctaaaaaaatcttttaaaaaaagacgttacaactgtaataaaatacatagaaaaacatgtatcttaatgcagttatgtcgtcataaatgtatttaaatacattttgcatcataatttgaataaccTTATTAGAGCAAGACTATTAAATAGTACATACCATCTTACTAAAGCTTGCAAGATTTATAGAGGAATTACTGTATG
s cb4.chrX              21318950 157 - 21540570 ------------------atgatt-------------------caaaa---------------tcgTTAAGAG-----AAGCGTTTGCCCGACTT--------------------------CTGGATGA---------------------------------------------------------------------------------GCGAGTTTTGTGGTT-------TAACTTTG------------AATCATTTAATAAA---------------GATAAATAACTAATAAA-------------------------CGCAATAAAAGTA--------------GTATCCTATTT--------------------------TCGAATACTTCATGTCTTTTT-----------TAAGAT----------ATCACT-----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       156955 466 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeSp111.Scaffold412     74262 19069 +   118955 I
e caeRem4.Crem_Contig24   660676 1063 -  1162296 I

a score=-1070.000000
s ce10.chrX               923337 29 + 17718866 TTGTTATACAACTGTTAGAAATTCCAAAT
s cb4.chrX              21319107  1 - 21540570 ----------------------------T
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold412     26398 29 -   118955 ttgatgcaaaacttttggcttgacctaat
i caeSp111.Scaffold412  T 42893 C 0
e caePb3.Scfld02_62       156955 466 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeRem4.Crem_Contig24   660676 1063 -  1162296 I

a score=-2374.000000
s ce10.chrX               923366 16 + 17718866 ----AATCT--TTTTGTTTCAA---
s cb4.chrX              21319109 11 - 21540570 ----AACTT--TT---GATA-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   661739 16 -  1162296 ----aattt--ttctgaataaa---
i caeRem4.Crem_Contig24 I 1063 I 2
s caeSp111.Scaffold412     26427 25 -   118955 attTAATTCGATTCAGGGTAAAATA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       156955 466 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=98589.000000
s ce10.chrX               923382 214 + 17718866 CTCACCAACTGTCCAATTGGTTTCTTCAAGCCGGTCTAACGACAAAGTGATCATATTATCTGCTGATTGAGAGGTTCCTGGGACGTTACTCCTACTCAGTAG--GCTCTTCAGCATGAGTGCATGATTTTCATATTTGTTTGGAACATTTTTGGTGAAACAATTCAGGAGCCAAATGCACAAGACGGTGAACTGAGCGTCCTTTTTATTTCTAGAA
s cb4.chrX              21319120 214 - 21540570 CTCACCAACTGTCCAGTTTGTCTCTTCCAAACGGTCCAAAGATAAGATATTTAAACTTTCCGATGTGTTTGATGTTCCCAATGTGTTTGACCTGCTCAACAA--GCTTTTCAGCATGAGCGCGTGATTTTCATATCTGTTCGGAATGTTTTTCGTGAAACAGTTGAGGAGCCAAATACAGAACACAGTGAACTGCGCATCGTTtttgtgtctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   661757 208 -  1162296 cCTACCAACTGTCCAATTTGTCTCTTCTAGTCGATCCAGTGACAATATGTTCATACTCTCA---ATGCTTGA---CCCGGGACTATTTGTTTTGCTGAGCAA--GCTTTTCAGCATCAGTGCGTGATTCTCATACTTGTTTGGCACGTTTCGAGTGAAGCAGTTGAGAAGCCAGATGCACAACACGGTGAATTGAGCGTCGTTTTTGTGTCTGTAA
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold412     26452 214 -   118955 CTGACCAACTGTCCAATTTGTTTCCTCTAAGCGATCCAACGAGAGAGTTATCATAGATTCTACTTGATTTGAAGCACTTGGATTATTACTATTGCTCAACAACGACTTC--AACATCAGAGCATGGTTTTCATATCTGTTCTGTACATTTTTGGTGAAACAGTTGAGGAACCAAATGCATAGTATTGTAAATTGGGCGTCGTTTTTgtgtctggaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       157421 214 +   783054 CTTACCAATTGTCCAATTTGTCTCTTCCAGGCGATCCAATGACAATGTCATCATATTTCCTGATGGATTGGAAGATCCACTAGTACTACTCTTGCTGAGCAA--ACTTCTGAGCATCAGCGCATGGTTATCATACTTGTTGGGGATGTTTCGAATGAAACAGTTGAGAAGCCAAATGCAGAGTACGGTGAATTGACCGTTATTCTTGTGTCTGAAA
i caePb3.Scfld02_62     I 466 I 42
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=-28308.000000
s ce10.chrX               923596  36 + 17718866 GTAAAGAAAAGATCTTGA------------------------------------------------------------------------------------------ATCAAAGTTGATAT------------TCCA--------------------------------------------------------------------------------------------------------------------
s cb4.chrX              21319334  36 - 21540570 ------------------------------------------------------------------------------------------------------------ataaaaattggc--------------tCCAC-------------------------------AATTTCCAC-----------------------CGAAAT------------------------------------------ATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   661965 103 -  1162296 ------------------------------------------------------------------------------------------------------------CAAAATGTTGTTAGAATTTGGAATAGGCCTC-------------------------------AATTTCTATGCTTC------------TTGTGGCGCAATCAGGCTGTTTTGAAGATGGGCAAACAAACAAACGTGAAACTGAAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     26666 207 -   118955 --aaaattaataattgaaatcaaatcaacTAGTCTTCTTATGTTTATTTTGCACAAGCCCCACTAATTTCGTCTGTCACTAACAATACCGTTAAAATTTGCACTATAAAAAATAGTTGCTATGATTCAAAAGCGTTCTCCCAGGTGACTAAGATTCACATGtgcttttttaattttttcgcttcattctattttattttccttgCAAT------------------------------------------A---
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       157635  42 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=63818.000000
s ce10.chrX               923632 140 + 17718866 CCCACCTTTCTTCAATATATGCATGGGACACACTCGCTGCATCAACTTTAGTCACGTATAAGTACATTAATTGTGGAAGGTAGAAATCCAAGTCTTTCTCCGGCAAGTCAAATAATCGCTTTCCTGAAGTGTAAGTCAGT------------
s cb4.chrX              21319370 137 - 21540570 CATACCTTTTTTCAATGTAAGCATGGGACACACTAGCCGCGTCTACTTTTGTAACGTAGAGATACATCAACTGAGGCAAGTAAAAATCCAAGTCTTTTTCGGGCAAATCGAAAAGCCGTTttcctgaaac------------aaa--aaag-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   662068 143 -  1162296 CGCACCTCTCTTCAATATAAGCATGAGAAACACTAGCCGCGTCGACTTTGGTGACGTAGAGATACATCAGCTGGGGGAGGTAGAAATCCAAGTCTTTCTCCGGCAAATCGAACAGTCGCTTTCCTGAAATT-------GTGGAAA--TAAAT
i caeRem4.Crem_Contig24 C 0 I 28
s caeSp111.Scaffold412     26873 140 -   118955 CTtgcctattttcaaaatatgcgTGTGTAACACTGGCCGCATCCACTTTTGTGACGTAGAGATATACCAACTGAGGAAgataaaaatccaaatctTCTACCGGCAAATCAAAAAGTCGTTTTCCTGAAAGA-------TTTGATAGT-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       157677 143 +   783054 ctCACCTTTCCTCGATATAAGCGTGTGTAACACTGGCAACATCAATTTTCGTCACATACAGGTAAATCAATTGAGGGAGGTAGAAATCCAAATCTTTCTCTGGTAAATCGAATAACCgcttccctgaaaaaaaa--cgtttgaaa-------
i caePb3.Scfld02_62     I 42 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=-4494.000000
s ce10.chrX               923772 27 + 17718866 ---------TTTATGACAATTTTT---------AATGTTTTTTCG
s cb4.chrX              21319507 33 - 21540570 ---------ttgaagcCATAATTTCAGAGCGCGAATCATACT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     27013 30 -   118955 TTCCATTACTTCAagcaaaatttt--------------tattcc-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       157820 23 +   783054 ----------tgaAACCAAGCTTG-----------TGATATTCT-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeRem4.Crem_Contig24   662211 28 -  1162296 I

a score=5911.000000
s ce10.chrX               923799 396 + 17718866  
s cb4.chrX              21319540 225 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   662239 454 -  1162296  
i caeRem4.Crem_Contig24 I 28 I 173
s caeSp111.Scaffold412     27043 266 -   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       157843 244 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=-1923.000000
s ce10.chrX               924195 16 + 17718866 AGATACGAAAAAGGTC
s cb4.chrX              21319765  5 - 21540570 --------AGATG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     27309 14 -   118955 Acaccaaaaaaagc--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       158087  9 +   783054 -------aaaaagttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeRem4.Crem_Contig24   662693 173 -  1162296 I

a score=-9033.000000
s ce10.chrX               924211 132 + 17718866 GATAGTTGCAAGCTTTACTAACTTAG----AAAACATTTCTTAGGTTAAGATTAAAAGCTATTAAAAGTGACTGGGCCAGTTGGAAAGTGAAATAATATTTCATCAAAACTATCGAAAATGATTTTTT--CCAACAAA
s cb4.chrX              21319770  28 - 21540570 ----------------------TCCA----AATACATGTTTTC--------------------------------------------------------------------------ATTAGCTTCTT----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     27323  34 -   118955 --------------------aatcGACAATAATAACTGACTCA----------------------------------------------------------------------------TAACTGTTTAA--------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       158096   0 +   783054 C
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeRem4.Crem_Contig24   662693 173 -  1162296 I

a score=-581.000000
s ce10.chrX               924343 6 + 17718866 AAAAAC
s cb4.chrX              21319798 3 - 21540570 GAA---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       158096 6 +   783054 agaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeSp111.Scaffold412     27357 0 -   118955 C
e caeRem4.Crem_Contig24   662693 173 -  1162296 I

a score=41017.000000
s ce10.chrX               924349 469 + 17718866  
s cb4.chrX              21319801 486 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   662866 501 -  1162296  
i caeRem4.Crem_Contig24 I 173 C 0
s caeSp111.Scaffold412     27357 489 -   118955  
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       158102 526 +   783054  
i caePb3.Scfld02_62     C 0 I 111
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=-11965.000000
s ce10.chrX               924818 134 + 17718866 AAACAAAATATTCAAGTTTTTGAGAAATTCATTATCT-----AAAGTTTGAACGCTG----------A---TATCGATTTTC---TCTCCACTTT-----ATTCT-AAATGACCTTGT-TATTTGTTTTA----------------------------GGCGCAAGCCAA--AAT--------CGATTTAAAAACTATTT
s cb4.chrX              21320287 166 - 21540570 --acaaaacatat---tttct------cTAAATGCCT-----TGCCTCCGGATTCTG------GACTG---TATCGATTTCTCGatgacctatttttaaattcctgAGATGACCTTTTgtatttgttttgtttcttgTGT-CTTCCCCGTTCATTTGCTGCGCAAATTCATCGAT--------TTATTCAAACCCGAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   663367 133 -  1162296 --ACACATCGTCC---TTTC------------AACCT-----TGAATTTGAATCACAATAGGTGTCTA---TATCGATTTCT-GGTCTCTTATTT-----TCCCC-------CTTCTCTTATTTGTTTTGTTCC---------------------CAATGCGCACTTCAATCAAT--------TCATTTGAATGCAACTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     27847 149 -   118955 ----------------------------TAGACGCCTGtcaagaaatttgaataaca--------CTGAAATATCAGCTATTGACtttcgcattt-----atcgt----tcatttttcgtatttgcttcgttttctgcatactttttcgccaattttcTGCGCTATTCAATCGGTCACCTACCTTATAGAAACT------
i caeSp111.Scaffold412  I 1 C 0
e caePb3.Scfld02_62       158628 111 +   783054 I
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=23627.000000
s ce10.chrX               924952 154 + 17718866 TC-----------------ATTTTAGATTTTTTGTTAAAAGTACAAATTTCAACGGAGCATAATAGT--CAGTAAATGGAGGATTTTAAAGATTTCACAGAAGTTACACAATTTACAAATGTAAGTCT--------TTCAATTAA---ATTTTTAAGAAATGGAATTGACGTTTCAAAAAATTA
s cb4.chrX              21320453 129 - 21540570 -T-----------------CTTCCAGATTATT--AAACGAGTACAACTTTCAAGGCTGCATAATATCATCAGTAAATGGAGAAATTCGGAGACTTCACGGAAGCTACACAGTTCACAAATGTGAGTTT--------CATAACAAA---TGCAT------------------------GAAATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   663500 144 -  1162296 -TTCCATTCAACttttaaactttcagattATC--AAAAGAGTACAATTATCAATACAGCATAATAGC--CAGTAAATGGAACAGTTTGGAGATTTCACAGAAGTTACTCAGTTTACAAATGTAAGTTT--------CAAACTCGAATTTGTGT------------------------GAAA---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     27996 132 -   118955 --------------------TTTCAGATTATC---GCCGAGTACAAA-------TCAGCATAATAGC--CTTTAAATGGAAGAATCTGGAGATTTTACCGAGGTGACACAGTTTACAAATGTAAGTTTTATTCCTCTCCAGTTAA---TGTATTGAT-TCTTGAATTA----------------
i caeSp111.Scaffold412  C 0 I 122
s caePb3.Scfld02_62       158739 117 +   783054 --tct--------------ttttcagattttc---gcaGAGTACAAAT------TCGGCATAATATT--CTGTACATGGATGAGATCGGAGATTTTACGGAAAcaacacaattcaaaaatgtgagttt------tctgaaatcta---tattt-------------------------------
i caePb3.Scfld02_62     I 111 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T

a score=0.000000
s ce10.chrX               925106 12 + 17718866 TCAAAACTGACA
e caePb3.Scfld02_62       158856  0 +   783054 C
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21320582  0 - 21540570 C
e caeSp111.Scaffold412     28128 122 -   118955 I
e caeRem4.Crem_Contig24   663644  0 -  1162296 C

a score=-2263.000000
s ce10.chrX               925118 53 + 17718866 TATAATAACATAAATTCGTTTCAATAAAGTGAATACAGTTTCGTCAGTGACAT-----
s caeRem4.Crem_Contig24   663644 15 -  1162296 --------------------------------------TTTCATCAATAATAT-----
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62       158856 19 +   783054 ---------------------------------------ttcttccataCAATGAATA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21320582  0 - 21540570 C
e caeSp111.Scaffold412     28128 122 -   118955 I

a score=-876.000000
s ce10.chrX               925171 54 + 17718866 TAAAATTCTGGTCAGTGCAATTATAATTTTGGTCAGTGCAATTAAACTTTTGTC
s caePb3.Scfld02_62       158875  6 +   783054 ------------------------------------------------TTTGTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21320582  0 - 21540570 C
e caeSp111.Scaffold412     28128 122 -   118955 I
e caeRem4.Crem_Contig24   663659  3 -  1162296 I

a score=0.000000
s ce10.chrX               925225 57 + 17718866 ATTGCAGTTAGTTTTCAGTAAACTTACATAACTTTAGAAATGATAATTATATCAAAT
e caePb3.Scfld02_62       158881  0 +   783054 C
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e cb4.chrX              21320582  0 - 21540570 C
e caeSp111.Scaffold412     28128 122 -   118955 I
e caeRem4.Crem_Contig24   663659  3 -  1162296 I

a score=-827.000000
s ce10.chrX               925282 35 + 17718866 CTAACTTTTAAAAAGTTAAATGAACATTTTGGGCA
s cb4.chrX              21320582  5 - 21540570 CTAAC------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       158881  0 +   783054 C
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeSp111.Scaffold412     28128 122 -   118955 I
e caeRem4.Crem_Contig24   663659  3 -  1162296 I

a score=-2029.000000
s ce10.chrX               925317 41 + 17718866 AAAATATAACAACACGAATTTTGAATCCAAAAAACTTACAA
s cb4.chrX              21320587  9 - 21540570 --------------------------------GAGTTGCTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     28250 16 -   118955 AAAAT-------------------------AGAAGATAACA
i caeSp111.Scaffold412  I 122 C 0
e caePb3.Scfld02_62       158881  0 +   783054 C
e caeJap4.Scaffold17495   160294 45908 -   161274 T
e caeRem4.Crem_Contig24   663659  3 -  1162296 I

a score=546.000000
s ce10.chrX               925358 1 + 17718866 A
s cb4.chrX              21320596 1 - 21540570 A
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold412     28266 1 -   118955 A
i caeSp111.Scaffold412  C 0 I 5
s caeJap4.Scaffold17495   114386 1 -   161274 a
i caeJap4.Scaffold17495 T 45908 C 0
e caePb3.Scfld02_62       158881 0 +   783054 C
e caeRem4.Crem_Contig24   663659 3 -  1162296 I

a score=273.000000
s ce10.chrX               925359 3 + 17718866 TTA
s caeJap4.Scaffold17495   114387 3 -   161274 tta
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       158881 0 +   783054 C
e cb4.chrX              21320597 3 - 21540570 I
e caeSp111.Scaffold412     28267 5 -   118955 I
e caeRem4.Crem_Contig24   663659 3 -  1162296 I

a score=72763.000000
s ce10.chrX               925362 81 + 17718866 CAGGTTCAATATCTCGGTTGCTCACAGCTGGTCAATAATGATAATGACAATGAGATGAAAGCACTGATGAAGGTAACTTTT
s cb4.chrX              21320600 81 - 21540570 CAGGTTCAATATCTAGGATGTTCACAGCTGGTCAACAATGACAATGACAATGAAATGAAGGCACTAATGAAGGTGTGTTTT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   663662 75 -  1162296 CAGGTTCAATATCTGGGATGTTCCCAACTAGTCAACAACGACAATGACAATGAAATGAAAGCGTTGATGAAGGTA------
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold412     28272 81 -   118955 CAGGTTCAATATTTAGGATGCTCACAACTAGTCAACAATGATAATGACAATGAAATGAAAGCACTTATGAAGGTATGTAGT
i caeSp111.Scaffold412  I 5 I 3
s caePb3.Scfld02_62       158881 81 +   783054 CAGGTCCAATACCTAGGATGCTCACAACTGGTGAATAACGACAATGACAATGAAATGAAGGCACTGATGAAGGTATATTAT
i caePb3.Scfld02_62     C 0 I 47
s caeJap4.Scaffold17495   114390 81 -   161274 aagGTGGATTATTTGGGATGTTCGCAACTTCTCAATAATGACGACGACACCGAAATGAAATTACTTATGAAGGTATGAATT
i caeJap4.Scaffold17495 C 0 C 0

a score=-12266.000000
s ce10.chrX               925443 38 + 17718866 GATGAAACTCGCAAGAAAAATAATAAACACATT---ATATT------------------
s cb4.chrX              21320681 28 - 21540570 -----TACACAC-AGA-------TAATTCCATTTCAACATT------------------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   663737 35 -  1162296 -----TACACAT-AGAATAGTAGGGACTAAATCacaaattt------------------
i caeRem4.Crem_Contig24 C 0 I 9
s caeSp111.Scaffold412     28356 28 -   118955 AATGTTACCCA------------TCACTAGAAC-CAACTTT------------------
i caeSp111.Scaffold412  I 3 I 2
s caeJap4.Scaffold17495   114471 39 -   161274 -----------------AAAAACTAAACAGAAC---AGGTTTTCGTACCTCTTTTCATT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       158962 47 +   783054 I

a score=161451.000000
s ce10.chrX               925481 265 + 17718866 CAGGTGCTCGATGAGCAGAAAGGAGCACAAACAATTAACGTCACCCTAGTTGTTCCGCATAATATTTCTGGCACAGTGAAGTAGGCTGATAAAAAAATGATAGAA---------A-AATATTGTATATTT-TTTACAGATTGATTGATGCACAAGGGAAAGTGCTTTCTTCGTTTTCACTTGTCAATATTCGATTTTGCATTCGTGGAGAAAGCTCCACTTCACAAAATAATTGCTTTGGAATTTCATTTACTCATAA---GATTAGTGTGTGAGTTTT----
s cb4.chrX              21320718 262 - 21540570 CAGGTGCTCGACGAGCAAAAAGGGGCCCAAACAGTTAATGTCACTCTAGTAGTTCCTCATAATATATCAGGAACAGTGAGGCGAGTTA--TTAGCACggataatg---------a-aaaaatatgaaagt--tttCAGGCTGATAGACgcacaagaaaaaattttatcgtcGTTCTCATTAGTCAACATTCGATTCTGCATTCGAGGAGAAAACTCAACATGTCAAAATAACTGCTTTGGAATTTCATTCACGCAAAA---GATTAACGTGTAAGCAAT----
i cb4.chrX              I 9 I 5
s caeRem4.Crem_Contig24   663781 275 -  1162296 caggtgCTCGACGAGCAGAAAGGAGCACAAACAGTCAACGTCACCCTGGTAGTCCCGCATAATATTTCAGGCACCGTGAAGTAAGCTAATATATTATATATAATTGAATGGAAca-agaaataacaaaataatttcagattgatagACTCACAAGGGAAGGTGCTTTCTTCATTCTCACTAGTCAACATAAGATTTTGCATTCGTGGAGAAAGTACGACATCTCAGAACAATTGCTTTGGTATCTCGTTCACACATAA---GATCAATGTGTAagtttt----
i caeRem4.Crem_Contig24 I 9 I 549
s caeSp111.Scaffold412     28386 264 -   118955 CAGGTTCTCGACGAGCAAAAAGGAGCACAAACAGTTAATGTCAGTCTGGTTGTTCCGCATAACATATCGGGCACAGTCAAGTAGGTCAACACAGGTTGTTTATTC---------G-TTTTCTAAACGATT--TTGCAGATTGATAGACTTCCAAGGAAAAATACTATCATCGTTTTCACTAGTCAATATAAGATTTTGCATCCGAGGAGACAGTTCGACATCacaaaataattgttttggaatttctttcACGCATAA---AATAAACAAGTAAGTCCC----
i caeSp111.Scaffold412  I 2 C 0
s caePb3.Scfld02_62       159009 263 +   783054 CAGGTGCTCGACGAGCAAAAAGGAGCACAAACAGTGAGCGTCACGCTGATCGTACCTCATAACATATCAGGAACAGTGAAGTAagttg--ggaattttttttcca---------g-aaatctaaaaaatc-atttcagacTGATTGATCAACAAGGGAAGCTGCTTTCGTCATTCTCATTAGTGAACATAAGATTTTGCATTCGTGGGGAAAGCACAACATCTCAAAACAATTGCTTCGGTATTTCTTTCACACACAA---AATTCTGACGTGAGTCTT----
i caePb3.Scfld02_62     I 47 C 0
s caeJap4.Scaffold17495   114510 267 -   161274 TAGGTTCTTGACGAGCAGAAAGGTACTCAAACTGTGAACGTGACTCTTGAAGTTCCCCATAAAATTACTGGCACCGTCAGGTATTTTG------GTTGGACAATA---------ATAAGAatataatatt-tttaaaggcTGTTAGACAGTAGGGGAAGTATACTTTCCTCTTTCGCTCTTGTTAATATCAGGTTTTGCATCAGAGGAGACAATACAACATCTCAGAAcaactgttttggaatttCTCTTACTCACAAATCAACTAACAAGTAAGTAATATTT
i caeJap4.Scaffold17495 C 0 C 0

a score=49457.000000
s ce10.chrX               925746 273 + 17718866 --TCGTTAT--------AATGTGTAAAATT--------TAGAATACAATTTATTCAAATTGTTTACAGAGGAGAGCATAACTCATCAGATATTCTACATCAGTGTCATGTTTTTCGGACAAGTAAAGCTGAAACGGTATT------------------------------------------------------CAAAATTTTAATTTTAGTTTCA------------------------------TTTCTAAAT-----------------------------------------CAATAAAT-----------ATTGCAGGCGGCCAAAGCCCTTTACTCATTCTCCTACGCATTCTCCAACAAAAATGTGTCATCTGAATCG--AACCGGTTAGAATTTCAATTTGAAAGTATTTTGGAGGTCAAA
s cb4.chrX              21320985 238 - 21540570 --TAGTAATGAAAatcagattctaaaattttttctttttttaacgcgagttaataattttattttcagaggaGAAAACAATCAGTCAGATGTTCTACACCAATGTCACGTTTTTCGAGCCAGCAAATCTGAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCCAAAGCGCTGTATTGCTTTTCCTACGCATTCTCTAATAAGAACGTGCCAGCAGTACCA--AACCGAATGGAATTCTTGTTCGAGAgcattttggaaattaaa
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24   664605 263 -  1162296 --TCGCTat--------gacttgaaaa--------------aattggaatt-----tcttATTCTCAGAGGAGACAACAATTCATCGGACATCCTACACCAGTGCCACGTATTCCGAACAAGTAAAGCAGAAACAGTAAG----TCG-----------------------------------------------CTCTTCC---------------------------------------------CTACCAAAC--AGT------------------------AATCTTAATTTACCATGAAT-------------TTTAGGCGGCCAAAGCACTCTACTGTTTCTCCTACGCCTTCTCCAACAAAAACGTGTCAGCAGTTTCT--AACCGGATGGAATTCCTGTTCGAGAGCATATTGGAGATCCGA
i caeRem4.Crem_Contig24 I 549 C 0
s caeSp111.Scaffold412     28650 251 -   118955 --TCTTaat--------gttttttaaacat-----------CATGAGACATA-----------TTCAGTGGTGAAAGC------AACGATATTCTTCATCAGTGCCATGTTTTTAGAACGAATAAAGCGGAAACAGTATG---ATCA-----------------------------------------------CATTACTTGGTTG---------------------------------------CTCGAAAAT--ATT------------------------------------CTACATAT-----------TTTATAGGCGGCCAAAGCACTATATTGCTTCTCCTACgcgttttcaaataaaaatgtggCCTCATCCCCG--AATCGGATGGAGTTTCAATTTGAGAGTATTCTggaaattaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159272 374 +   783054 --ACTTGAT--------G---AGCAAGCag------------gtgaaaaatgaag-----gtttttaGGGGTGAAAACTTGGCTTCAGACATTCTCCATCAATGTCACGTTTTTCGAACGAGCAAGGCAGAAACGGTACGTatatcaacaaaaatgagGATTTAGTGTAGTCTGTAGTAGTCAATTGAGAAAACCGCTACTTGACTGGGTGTTTCA-------------TTTagatttttgtcatttttcaaaac--attgattgGGTTCTGTGAACTCAGTGTGGTTTTCAAACACCATGGATGT--------ATTTTCAGGCGGCCAAAGCACTGTACTGCTTCTCTTATgctttttcaaataagaacACATCAACACCACCG--AGTCGAATGGAGTTTCAATTCGAGAGTgttttggaaatcaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   114777 321 -   161274 TCACTGTTT--------Gatcataaaaatt--------ttgatttaaatTTACATACTTAAATTTCAGAAGCAAAGACATTTCTACTGATATTCTTCATCAGTGCCACGTGTTTCGAACTTCAAAAACGGAAACGGTGAG------------------------------------------------------CATGATCTATTTGTCCTTTTTGGTGTGAAATCCACTTAAAATCACCATACAATTTCTAAATGCAcc------------------------------------ctttaaatatttatttaaaattacaGGCAATAAAAGCATTGTATTGCTTTTCATACGCTTTCGCCAATA--AATCTTCTGACATCGACGAAAATCGCATGAAGTTTCAATTTGAAAGCGTTCTTGAAATTAAA
i caeJap4.Scaffold17495 C 0 I 327

a score=100528.000000
s ce10.chrX               926019 114 + 17718866 GAGAACGATGGAACTGTTGAGAAGCCCAGCTGGAAACTGTGTCCTCAACATAATGGGGTGTTCAAAGTGCGACGAGATCGAGAGAAGAAGATTGTTGTTCAGTTGAGACAGGTA
s cb4.chrX              21321223 114 - 21540570 gaaaatgatGGAACAATGGAAAAGCCTAACTGGAAGTTGTGTCCGCAGCATAACGGGGTTTTCAAAGTGAGGAGAGaccgagagaaaaaaattgtggtgCAGTTAAAACAGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   664868 114 -  1162296 GAAAACGATGGGACAGCGGATAAACCTATATGGAAACTGTGCCCCCAACACAATGGAGTGTTCAAAGTAAGAAGGGATCGAGAGAAGAAAATCGTGGTGCAGTTGAAGCAGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     28901 114 -   118955 gaaaacgATGGTACAGTTGAGAAACCGAATTGGAAGTTATGCCCGCAACATGATGGTGTGTTCAAAGTGAGAAGAgatcgagagaaaaaaattgtggtGCAGCTTAAACAGGTA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159646 114 +   783054 gaaaacgaTGGAACAGTGGAGAAGCCAAATTGGAAATTATGTCCACAACATGACGGAGTTTTCAAAGTTAGAAGAGATCGTGAGAAAAAGATCATCGTGCAACTCAAACAAGTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   115425 114 -   161274 GAAAACGATGGGACTCTTTCCAAACCAAACTGGAAGCTATGCCCGCAACATAAGGGAGTATTTAAAGTTCGAAGAGACcgcgaaaaaaagttagtGGTTCAACTGAAACAAGTA
i caeJap4.Scaffold17495 I 327 I 586

a score=-15695.000000
s ce10.chrX               926133 50 + 17718866 GCTAGAAAGAAAACAGTTAACTTTTAC-----------------TTTAGAAAATGAAAAAATATAT-----------A
s cb4.chrX              21321337 38 - 21540570 -----------------TGACTT---------------------TCTAAGCACTGAGAAGATTaac--ttttgctctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   664982 43 -  1162296 -----------------AAAACTTGattataggaaaaaaaaatatgcaaaaaccaaaaaa------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29015 34 -   118955 -----------------t--------------------------tacaaa-gaaaagaaaataatcgAATAAGGTTGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159760 38 +   783054 -----------------TGTTTTACAC-----------------TTCAAA-ACAGAGATCATCATC-----AAGTTGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   115539 586 -   161274 I

a score=69472.000000
s ce10.chrX               926183 199 + 17718866 TCTTAGATTGACGGATTTCTTCTTAACATTAAAAAATGTTTCGGAATGTTATTGGCAGCAGGGAGGAACTTGAGACACTCAGATTTACAATTGCTAGAAATGGATAGAAATGCAACAGGTGGGA--------ATTTTAAAAAAGAAATCGAATTGCAGTACAATGTTTCTAGTTAAATTTAGAATGTGTTAAATGATCAAAAAATAT
s cb4.chrX              21321375 127 - 21540570 tttcagGTGGAAGGATTTTTgttaaatatcaaaaaatgctttGGTATGCTACTAGCGGCTGGAAGAAACCTGAGACACTCAGACTTACAGCTACTTGAAatgcagagaaacgagacaggTTAGA------------------------------------------------------CTA--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665025 150 -  1162296 tttcagatcgaagGGTTCCTTctcaatatcaaaaagtgttttggcATGTTACTGGCAGCCGGAAGGAACTTGAGGCATTCGGATTTGCAATTATTGGAGatgcagagaaacgagacaggTAAAA--------GAT---------------------AAGATAAT--GGTTACACAGACCGG--------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29049 143 -   118955 TTT-AGATAAAAGGATTCCTattaaatatcaaaaaatgcttCGGAATGTTGCTGGCAGCTGGAAGAAATTTGAGACACTCCGATCTTCAACTcttggaaatggaaagaaacgAAACTGGTGTGG-------------------------------------TCTTATTTTGAACGGGACTG--------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159798 145 +   783054 TTTCAGGTGAAAGGGTTTCtactgaatatcaaaaaatgctttggAATGCTGTTGGCTGCTGGAAGAAATTTGAGGCATTCCGACTTGCAACTATTGGAAATGGAAAGGAATGAAACTAGTAAGG-------------------------------------AAC--Attggatcaaaactaaaa-----------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   116125 205 -   161274 tttcaggTTGgtggttttttgttaaatataaaaaaatgtttcggaatGCTCCTAGCCGCTGGCAGAAACTTGAGGCATTCCGATTTTCAACTTCTCGAAATGGAAAGAAACGAAACAAGTTAGCCGATTCTtgttttaaagggggtgccaactttctggggaaa--gttgcttaaaatatagtactgggtgggggatttacgaatat
i caeJap4.Scaffold17495 I 586 I 3581

a score=-10732.000000
s ce10.chrX               926382 29 + 17718866 GATGCACTGACAAGTTTTT------AAAGCACTGA---------------------
s cb4.chrX              21321502 14 - 21540570 ---------------GTTG------AAAGCAATGG---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665175 20 -  1162296 ---------------GTTGTACTACCAAATAGTGA---------------------
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold412     29192 24 -   118955 ---------------TTTA------GGGATTTTGTGATT-----------GGTAAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159943 39 +   783054 -----------aattttct------aacatTTTGAGATTGTGGGCACCTAGTTAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   116330 3581 -   161274 I

a score=-13377.000000
s ce10.chrX               926411 111 + 17718866 CCAAAAATGCAACTTGCACTGACCAAAAAATGCTCAAACAGATTCAAATAAAGAAACCTAAATGTTATCATTGAAAATTTTTTTAAAAACATTACTGATAAAGTCAAATAA
s caeRem4.Crem_Contig24   665198  40 -  1162296 ----AGCG-----CT---CGGAGGGGGa-------aaacggaaacaaaaaaatcaac----------------------------------------------------aa
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold412     29216  21 -   118955 CGTAAATT------------------------------TATAAACAAGT------------------------------------------------------------AA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       159982  76 +   783054 cgaaaattgcaattt---ttgagaaaga-------atgtaaaaacaaatagaacaat---------------gaaa--------aaaaagggtctTGGCgc--tcagaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   116330 3581 -   161274 I
e cb4.chrX              21321516   0 - 21540570 C

a score=-2066.000000
s ce10.chrX               926522 8 + 17718866 TTAATTAC
s caeRem4.Crem_Contig24   665238 1 -  1162296 c-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29237 8 -   118955 CGTTTTCT
i caeSp111.Scaffold412  C 0 I 2
s caePb3.Scfld02_62       160058 8 +   783054 cttttttt
i caePb3.Scfld02_62     C 0 I 50
s caeJap4.Scaffold17495    43164 8 +   161274 TTAATTAT
i caeJap4.Scaffold17495 I 26366 I 3
e cb4.chrX              21321516 0 - 21540570 C

a score=628.000000
s ce10.chrX               926530 4 + 17718866 TGAA
s cb4.chrX              21321516 4 - 21540570 TAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665239 3 -  1162296 -aag
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       160116 4 +   783054 TGGA
i caePb3.Scfld02_62     I 50 I 265
s caeJap4.Scaffold17495    43175 4 +   161274 TAAT
i caeJap4.Scaffold17495 I 3 C 0
e caeSp111.Scaffold412     29245 2 -   118955 I

a score=79217.000000
s ce10.chrX               926534 106 + 17718866 ATAGTCAAATTGCAGGCACTGACTCAGCCGTATTCGTGATCGAAGCCAATTGGGATCCGCGTGTGCACATGTTCGAAGTGTTAAACACGGAGACGCCGAGAGGTGG
s cb4.chrX              21321520 106 - 21540570 GcagtcaattttcaggctCTGATTCAGCCGTCTTCCTGATTGAGGCCAATTGGGACCCGCGAGTACACATGTTTGAAGTGTTGAACACAGAGACGCCACGAGGTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665242 104 -  1162296 aaaa--aaattccaggCACCGACTCGGCAGTATTCTTGATCGAAGCTAATTGGGATCCGCGTGTGCATATGTTTGAAGTGTTAAACACCGAGACACCACGAGGTGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29247  92 -   118955 --------------GGAAACGACTCAGCTGTGTTTATAATAGAAGCCAATTGGGACCCACGTGTGCATATGTTCGAAGTTTTGAACACCGAGACACCTCGAGGTAT
i caeSp111.Scaffold412  I 2 C 0
s caePb3.Scfld02_62       160385 106 +   783054 ataataatttttcaggtaGCGACTCAGCTGTTTTCATAATCGAAGCTCACTGGGATCCGCGTGTACATAtgttcgaagttttgaatactGAGACACCTCGAGGTGA
i caePb3.Scfld02_62     I 265 C 0
s caeJap4.Scaffold17495    43179 105 +   161274 ATCCCCAAATTA-AGGTGCTGACActgcaattttcattattgAAGCTGCTTGGGATCCTCGCGTGCACATGTTTGAAGTTTTAAACACCGAAACTCCGAGAGGTGG
i caeJap4.Scaffold17495 C 0 I 34

a score=-6187.000000
s ce10.chrX               926640 19 + 17718866 GAGTTTTCTCTTCGTTTAT--------
s cb4.chrX              21321626 13 - 21540570 GCATATGT------TATAT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665346  8 -  1162296 GTG-----------CCTAT--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29339  6 -   118955 G-------------GCCat--------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       160491 14 +   783054 G-------------ACTATTGGTTTGT
i caePb3.Scfld02_62     C 0 I 67
e caeJap4.Scaffold17495    43284 34 +   161274 I

a score=3969.000000
s ce10.chrX               926659 20 + 17718866 TGATTTCTCATAAAACAATC
s cb4.chrX              21321639 19 - 21540570 TGATTTC-AATCAGACATAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665354 19 -  1162296 TGATTTA-CATGAGACAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29345 19 -   118955 tgatttt-tataaaacaaTA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I

a score=-3265.000000
s ce10.chrX               926679 82 + 17718866 TTGTTCTCTTGTCGATTGTGTTACACAAACATAGGCTACACTTACATACTCTATTGATATCTATTTTTACATGAAGTCATAC-
s cb4.chrX              21321658 26 - 21540570 CGTTC-------------TATTACACACATAGA--------------------------------------------CATGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665373 29 -  1162296 TCTTT-----------TGTGTTACACAAACAAA------------------------------------------ATCACGC-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e caeSp111.Scaffold412     29364  0 -   118955 C

a score=-403.000000
s ce10.chrX               926761 26 + 17718866 GAATTTGTTGGTTTTCACAGACTTGT
s cb4.chrX              21321684 10 - 21540570 --------------TCACGCACCT--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e caeSp111.Scaffold412     29364  0 -   118955 C
e caeRem4.Crem_Contig24   665402  0 -  1162296 C

a score=-99.000000
s ce10.chrX               926787 19 + 17718866 AAATCGATTTTACAAAATA
s cb4.chrX              21321694  7 - 21540570 ---TCTACTT---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     29364 19 -   118955 AGATTAATTTTACAACACG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e caeRem4.Crem_Contig24   665402  0 -  1162296 C

a score=-817.000000
s ce10.chrX               926806 65 + 17718866 TAGTTAGGCAGTAACGGAAGGATTTTCATTTAAGTTTGAAATACAAAACAATTTAACTCTTAGAA
s cb4.chrX              21321701 22 - 21540570 ---------------------------------GTGTGAATTACACACTAATTGA----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e caeSp111.Scaffold412     29383  0 -   118955 C
e caeRem4.Crem_Contig24   665402  0 -  1162296 C

a score=-9.000000
s ce10.chrX               926871 17 + 17718866 AAGCTAAAATATCTTAG
s caeRem4.Crem_Contig24   665402 10 -  1162296 AAGCGAAAGT-------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e cb4.chrX              21321723  0 - 21540570 C
e caeSp111.Scaffold412     29383  0 -   118955 C

a score=0.000000
s ce10.chrX               926888 51 + 17718866 AAAAAACAATATAACTATATTAGAAACAAAAAAAAATGAAAAGCAGCAAGT
e caePb3.Scfld02_62       160505 67 +   783054 I
e caeJap4.Scaffold17495    43284 34 +   161274 I
e cb4.chrX              21321723  0 - 21540570 C
e caeSp111.Scaffold412     29383  0 -   118955 C
e caeRem4.Crem_Contig24   665412  0 -  1162296 C

a score=-1098.000000
s ce10.chrX               926939 21 + 17718866 ACCACTTCCAAATCATTACA--C-
s caeRem4.Crem_Contig24   665412 12 -  1162296 --------CAAT-CATTACA--C-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29383 22 -   118955 GCTGCCCCCAATATGTTACG--CA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       160572 18 +   783054 ------TTCGATACATTACATTCG
i caePb3.Scfld02_62     I 67 C 0
e caeJap4.Scaffold17495    43284 34 +   161274 I
e cb4.chrX              21321723  0 - 21540570 C

a score=164826.000000
s ce10.chrX               926960 172 + 17718866 TTT-TAGACACACGAGTGTTCATGACAGTGGCGATTGATGTTATTGTCTCGGAAATCAGTGAACCAATTCGATTCTCGATGGAAGCAATGTCACGTGTTTTTCATGAACACGAACGATTCTATAAAACACCACAAACGGTGGTTTCTGAGGAATTTACACTAGTTTTGGAGGT
s cb4.chrX              21321723 172 - 21540570 TTT-CAGACACAAGAGTGTTCATGACCGTTGCTGTGGATGTCATTGTTATGGAAATTAGCGAACCAATTCGATTCTCAATGGAGGCGATGTCACGAGTGTTTCATGAACATGAACGTTTCTATAAAACCCCACAAACAGTGGTGTCGGAAGAGTTCACATTGGTTTTAGAGgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665424 172 -  1162296 TTC-CAGACACACGAGTGTTCATGACAGTGGCTATTGATGTGATCGTAACCGAAATCAGTGAACCAATTCGATTCTCAATGGAGGCAATGTCACGTGTGTTCCATGAACATGAACGGTTCTACAAGACACCGCAAACAGTAGTCTCCGAGGAATTCACATTGGTTCTGGAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29405 172 -   118955 TTT-TAGATACACGAGTGTTCATGACAGTGGCTGTTGATGTGATTGTTACGGAAATTAGTGAACCGATTCGATTCTCAATGGAGGCAATGTCACGTGTTTTTCATGAACATGAACGTTTTTACAAAACCCCACAGACAGtggtttcagaagaatttaCACTGGTGTTAGAGGT
i caeSp111.Scaffold412  C 0 I 192
s caePb3.Scfld02_62       160590 173 +   783054 TTTGCAGAAACACGCGTGTTCATGACTGTTGCTGTTGATGTAATTGTTACGGAAATCAGTGAACCAATTCGATTTTCCATGGAAGCCATGTCACGTGTGTTTCATGAACATGAACGCTTCTACAAGACCCCGCAAACAGTGGTTTCAGAAGAATTCACATTGATTTTGGAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    43318 172 +   161274 TTT-AAGAAACACGGGTTTTTATGACAGTGGCAATAGACGTTATTGTGGACGAAGTTAGTGAGCCAATACGATTTTCAATCGAAACAATGTCACGAGTGTTTCACGAACATGAGCGCTTCTATAAAACTCCTCAAACTTTTGTTTCCGAGGAATTCTTACTTTGTTTAGaagc
i caeJap4.Scaffold17495 I 34 C 0

a score=699.000000
s ce10.chrX               927132 2 + 17718866 GA
s cb4.chrX              21321895 1 - 21540570 -a
i cb4.chrX              C 0 I 1999
s caeRem4.Crem_Contig24   665596 1 -  1162296 -A
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62       160763 1 +   783054 -A
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495    43490 2 +   161274 aa
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     29577 192 -   118955 I

a score=600.000000
s ce10.chrX               927134 1 + 17718866 G
s caeRem4.Crem_Contig24   665598 1 -  1162296 G
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62       160765 1 +   783054 G
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495    43492 1 +   161274 g
i caeJap4.Scaffold17495 C 0 I 167
e cb4.chrX              21321896 1999 - 21540570 I
e caeSp111.Scaffold412     29577 192 -   118955 I

a score=273.000000
s ce10.chrX               927135 1 + 17718866 A
s caeRem4.Crem_Contig24   665599 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       160766 1 +   783054 A
i caePb3.Scfld02_62     C 0 I 215
e caeJap4.Scaffold17495    43493 167 +   161274 I
e cb4.chrX              21321896 1999 - 21540570 I
e caeSp111.Scaffold412     29577 192 -   118955 I

a score=91.000000
s ce10.chrX               927136 1 + 17718866 A
s caeRem4.Crem_Contig24   665600 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 382
e caePb3.Scfld02_62       160767 215 +   783054 I
e caeJap4.Scaffold17495    43493 167 +   161274 I
e cb4.chrX              21321896 1999 - 21540570 I
e caeSp111.Scaffold412     29577 192 -   118955 I

a score=0.000000
s ce10.chrX               927137 1742 + 17718866  
e caePb3.Scfld02_62       160767  215 +   783054 I
e caeJap4.Scaffold17495    43493  167 +   161274 I
e cb4.chrX              21321896 1999 - 21540570 I
e caeSp111.Scaffold412     29577  192 -   118955 I
e caeRem4.Crem_Contig24   665601  382 -  1162296 I

a score=462.000000
s ce10.chrX               928879 51 + 17718866 ACTTCTTTCCCTTTGTTTAATATTTTCATTATGT----CAACACCCAACATATTG
s caeSp111.Scaffold412     29769 54 -   118955 acatttttctttttgccaaa-gcttttactatatttttCGTTACGCACGACAACG
i caeSp111.Scaffold412  I 192 C 0
e caePb3.Scfld02_62       160767 215 +   783054 I
e caeJap4.Scaffold17495    43493 167 +   161274 I
e cb4.chrX              21321896 1999 - 21540570 I
e caeRem4.Crem_Contig24   665601 382 -  1162296 I

a score=-673.000000
s ce10.chrX               928930 4 + 17718866 AATT-
s cb4.chrX              21323895 4 - 21540570 agtt-
i cb4.chrX              I 1999 C 0
s caeSp111.Scaffold412     29823 4 -   118955 -gatc
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       160767 215 +   783054 I
e caeJap4.Scaffold17495    43493 167 +   161274 I
e caeRem4.Crem_Contig24   665601 382 -  1162296 I

a score=-96.000000
s ce10.chrX               928934 1 + 17718866 T
s cb4.chrX              21323899 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665983 1 -  1162296 T
i caeRem4.Crem_Contig24 I 382 C 0
s caeSp111.Scaffold412     29827 1 -   118955 t
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       160767 215 +   783054 I
e caeJap4.Scaffold17495    43493 167 +   161274 I

a score=36634.000000
s ce10.chrX               928935 81 + 17718866 TGTTTT-CAGAAAAGCTGCGATCAATCGGATCCCAACGACCGGAAGCTTACGTTCATCTCACTGGAATCGGATAGCGATCGT
s cb4.chrX              21323900 81 - 21540570 tatttt-cagaaaaacttcgATCAGGCTGACCTTAACGACCGAAAGCTCACGTTTATATCCCTTGAGTCAGACAGTGAGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   665984 82 -  1162296 TGTTTTACAGAAAAACTTTGATCAAGCGGATCCAAACGATCGAAAGTTGACATTCATCTCATTGGAGTCGGATAGTGATCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     29828 77 -   118955 ----tt-cagaaaaacactGATCCAACTGAACCCAACGACAGAAAGCTCATCTTTATTTCGCTTGAATCTGATAGTGATCGC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       160982 81 +   783054 TGTTTA-CAGAAAAACACCGATCACGCCGAAAAGAATGatcagaaattgattttcatttcattggAATCGGATAGTGACAGA
i caePb3.Scfld02_62     I 215 C 0
e caeJap4.Scaffold17495    43493 167 +   161274 I

a score=77952.000000
s ce10.chrX               929016 84 + 17718866 AAAAGATCAAAGCAAAATCTTGGCAAGAGCCCATCCAGAATGCCCACACAACTTTTGCATCCAACAGGCGATGATGAATCAGGT
s cb4.chrX              21323981 84 - 21540570 AAACGTTTGAAACAAAACTTGGGCAAAAGTCCGTCAAGAATGCCTACTCAACTATTGCATCCGACTGGTGATGATGAATCAGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   666066 84 -  1162296 AAACGTTCAAAGCAGAACCTGGGAAAGAGTCCGTCGAGAATGCCAACACAACTGTTACATCCAACTGGAGATGATGAGTCAGGT
i caeRem4.Crem_Contig24 C 0 I 425
s caeSp111.Scaffold412     29905 84 -   118955 AAGAGGTCAAAGCAAAATCTAGGGAAAAGTCCATCAAGAATGCCAACGCAATTGTTACACCCAACCGGAGAAGATGAATCGGGT
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       161063 84 +   783054 AAGCGATCAAAACAAAACCTTGGGAAAAGCCCGTCAAGAATGCCAACACAGTTGTTGCATCCAACGGGAGAAGACGAATCGGGT
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495    43660 84 +   161274 aAACGGTGCAAACAAAATATGGGGAAAAGTCCATCAAGAATGCCGACACAGCTTTTGCATCCAACCGGAGAGGATGATTCAGGT
i caeJap4.Scaffold17495 I 167 C 0

a score=273.000000
s ce10.chrX               929100 1 + 17718866 A
s cb4.chrX              21324065 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17495    43744 1 +   161274 a
i caeJap4.Scaffold17495 C 0 I 7739
e caePb3.Scfld02_62       161147 1 +   783054 I
e caeSp111.Scaffold412     29989 1 -   118955 I
e caeRem4.Crem_Contig24   666150 425 -  1162296 I

a score=-6622.000000
s ce10.chrX               929101 22 + 17718866 GAGACGGTCGATTTCAG-AGGCA-------
s cb4.chrX              21324066 22 - 21540570 GACCAACCCAAATGAAC-ATGTA-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     29990 23 -   118955 -----TGCTCTATTCTCATTCCAATAG--G
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       161148 24 +   783054 -----AGttatattttc-tttcaatcgCAG
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17495    43745 7739 +   161274 I
e caeRem4.Crem_Contig24   666150 425 -  1162296 I

a score=-34034.000000
s ce10.chrX               929123  23 + 17718866 ATCTTCA----------------------------------------------------------------------------ACAAATCCGTGAAA-------------------------------------------------------------------------------------------------------------------------------------------------------GA
s cb4.chrX              21324088  13 - 21540570 ACc---------------------------------------------------------------------------------caaat-----aaa-------------------------------------------------------------------------------------------------------------------------------------------------------at
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   666575  18 -  1162296 ACCGTCA----------------------------------------------------------------------------ACATAT-----CAA-------------------------------------------------------------------------------------------------------------------------------------------------------AT
i caeRem4.Crem_Contig24 I 425 C 0
s caeSp111.Scaffold412     30013  17 -   118955 ---GTCT---------------------------------------AATG---------------------------------Acaaga-----aaa---------------------------------------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       161172 242 +   783054 ---GTTTACCATATTCCTTTTCTGTAAAGCGAAATCGTTCAAAAACAATGTATTTCTAAAGTTCCTACAAATTTGataacgaaacaaaa-----aaaaatctcaaaaacgtAGACGGTGAGACAAATTAATTTTCACGTGACACCGTTCGAAGATGTTATATAACTGTTTTTAGGACGCAAAAACATTGCAAAAACGTTAAAATTACGTATAACTTCGGGATAGGATTGCTGTTttaatcctaatttttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    43745 7739 +   161274 I

a score=127766.000000
s ce10.chrX               929146 245 + 17718866 TTCAGATTGTGACGAACCATTGTTGTCGGGCTCGGGAAAAGTTTCACAGGAGTGCAAGGAGGAGCACTTGGAGATGTGGGATCAGTTGATTGAGAACTGGG-ATCAGCAGAGTGA-----------------------------------TC------------------GGCCGCAGAAAATATCGGAACTTGTGTTGGATGGGATTCCGGATAAGCTTCGTGGACGTGTCTGGCAACTTTTATCAAATGTAAGAATTTT----GGTAATGAGTTTTTTTTGTTGTTAATTTATCCCATTCT
s cb4.chrX              21324101 201 - 21540570 ttcagattgtgaCGAGCCGTTGTTATCCGGATCAGGAAAAGTGTCTCAGGAATGTAAAGAGGAGCATCTCGAGCTGTGGAATCAGTTGATAAACAATTGGG-ATCAACAAAGTGA-----------------------------------TC------------------GACCTGAAAGAATATCAGAGCTAGTGCTTGATGGAATACCAGACAAGCTTCGAGGACACGTTTGGCAGCTGCTGGCAAATGTGAA------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   666593 207 -  1162296 TCCAGATTGCGATGAGCCACTGCTATCAGGATCTGGAAAAGTCTCCCAAGAATGCAAGGAGGAACATTTAGAAATGTGGAACAGTCTTATCGAGAATTGGG-ATCAACAAAGTGA-----------------------------------TC------------------GACCGGAGAAAATCTCAGAACTGGTGCTGGATGGTATCCCTGATAAATTACGTGGACAGGTGTGGCAGTTGTTGGCTAACGTGAGTATCTT------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30030 201 -   118955 ttcagattgtGATGAGCCTTTACTGTCCGGATCGGGAAAAGTGTCACAGGAATGCAAAGAAGAGCATCTGGAAATGTGGAACCAGCTCATTGGAAATTGGG-ATCAGCAGAGTAA-----------------------------------TC------------------GgcctgaaaaaatatcagaGTTAGTTCTGGATGGTATACCAGATAAGCTGAGGGGTCGAGTTTGGCAGCTGCTGGCAAATGTGAG------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       161414 201 +   783054 tctagattgtGACGAGCCGCTTCTGTCTGGATCAGGAAAAGTGTCGCAGGAATGCAAAGAAGAACATCTTGAACTGTGGAACCAGCttattgaaaattggg-atcagcaaaaaaa-----------------------------------tc------------------gaccggaaaaaatatcagaacttGTCTTAGATGGGATTCCGGACAAGCTCAGGGGACATGTTTGGCAACTTCTGGCTGATgtaag------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   119911 287 -   161274 TTCAGATTGCGATGAACCTTTACTTTCTGGATCTGGTCTAGTTTTACAAGAGTATGGCgaggaaaagttgaaaatatgGGAGGAACTTATCGAACACTGGGAATCGACAGAAAAAAGGTTTCGTATTAATATTGCTTAAGTTGTTCACATTCTAATGTTTTAACAGTTAAGGCCGGACGAAATAGATCATCTTATCCTGGACGGTATTCCGGATAAATTACGAGGGAAAGTTTGGCAATTACTTGCAAATgtaggattttttttctgcgattGCCTTTTCCCAATTT----------------
i caeJap4.Scaffold17495 I 3581 I 515

a score=-12171.000000
s ce10.chrX               929391 94 + 17718866 GTTGACTTAATTAATTATCAAAAATTTATCAATAAAAAATGGAGTCCATTCTTTATTTTAAAAAACTTTAAAACTAGTTATTTTAATATCATAA
s cb4.chrX              21324302 34 - 21540570 ------ATTGTGAAGTTgtcaaaattagt-------------------tttcatGTTTT-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   666800 37 -  1162296 -----TCTTATTAGTCTGAAAGAAACTAT-----------------AACTTCCCATCTT-----------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30231 35 -   118955 -------CGTTTAATTACTTGTAATCTGT-----------------GCATCTTCATTCT-----------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       161615 35 +   783054 -------ttctggaacattaaCCATTCAT-----------------TTTACCGCGTTTT-----------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   120198 515 -   161274 I

a score=289942.000000
s ce10.chrX               929485 381 + 17718866 TTTCCAGGCGATTGACCAACCTGACCTTGTGGAAAAGTACCACATTTTCTTATCGCAACCATGTCCTTCTGAACAAGTAATTATGAGAGACATCCATCGGACATTCCCGGCTCACGACTATTTCAAAGAATCTCAAGGAAAAGGGCAACAGTCGCTGTACAAAATCAGCAAA------------------------------------------------------------GTCTACTCCCTCTACGACGAGGAGGTGTCCTACTGTCAAGGGCTCTCATTTCTGGCAGCCAGTTTATTGTTGCAC-------------------------------------------------ATGCCGGAAGAGCAAGCGTTTTGCACACTTGTCAAAATTATGTTTAATTATGGATTGCGTGATTTGTTTAAGCTGGGATTTGACAATCTGCATTTGCGCTTTTTTCAACTTACCGCTTTATTGAAGGTGAGTGT
s cb4.chrX              21324336 419 - 21540570 -----AGGCTATCGACCAACCTGATCTCGTCGAAGAGTATCTTGATTTCTTGAACCAGCCTTGTCCATCAGAGCAAGTTATTATGAGAGACATTCACCGCACGTTCCCAGCACATGACTATTTCAAAGAATCTGGAGGAAAAGGCCAAGAGTCTTTATACAAAATTAGCAAAGTAAg--------taataaaaaatgatttgatgAAATTTA--------ATT-GATTCAAGGTTTACTCATTGTATGACGAAGAAGTATCATATTGTCAAGGTTTGTCGTTTTTGGCGGCTAGTTTGTTGCTCCAC-------------------------------------------------ATGCCAGAAGAACAAGCATTCTGTACGCTTGTCAAAATCATGTTTAATTATGGCTTGAGAGATTTGTTCAAGTTGGGCTTCGACAACCTGCATTTGCGTTTCTTTCAGCTCACAGCTTTattgaaagtgagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   666837 420 -  1162296 -----AGGCAATCGACCAACCGGACCTTGTTGAAAAGTACCATAACTTCCTGAACCAGCCATGTCCATCGGAGCAAGTCATCATGAGAGATATTCATCGCACATTCCCAGCTCATGACTATTTTAAAGAATCTGGAGGAAAAGGTCAAGAATCATTGTACAAAATCAGCAAAGTAAG----------ATTTTCATTTATTAAATCCAAAATACGCATAATATT-TCTTCCAGGTTTATTCACTCTACGACGAAGAAGTATCGTATTGTCAAGGTCTTTCATTTCTGGCGGCCAGTCTGCTGCTGCAT-------------------------------------------------ATGCCGGAGGAGCAAGCATTCTGTACACTTGTGAAAATAATGTTCAATTATGGGTTACGCGATCTGTTCAAATTGGGATTTGATAATTTGCACCTGCGATTCTTTCAGCTTACCGCTTTATTAAAGGTA-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30266 379 -   118955 -TAC-AGGCCATAGACCAGCCGGACCTTGTTGAAAAGTACCacatgtttttgaatcagCCATGTCCATCAGAGCAAGTTATTATGAGAGACATACATCGGACATTTCCTGCTCATGAGTATTTCAAGGAATCTGGGGGCAAAGGTCAAGAATCGCTTTACAAAATCAGCAAA------------------------------------------------------------GTTTATTCATTATACGACGAGGAAGTTTCTTATTGTCAGGgtctttcatttttggcTGCAAGTTTATTACTTCAT-------------------------------------------------ATGCCAGAAGAGCAAGCATTCTGTACATTAGTCAAGATCATGTTCAGTTATGGGTTACGTGATTTATTCAAGTTGGGATTCGACAATTTGCATTTACGCTTTTTTCAGCTGACAGCTCTATTGAAAGTGAgcat
i caeSp111.Scaffold412  C 0 I 17
s caePb3.Scfld02_62       161650 380 +   783054 -TTCAAGGCTATCAACCAACCGGAGCTTGTCGAAAAATATCATGCTTTGCTCAATGAACCATGCCCTTCCGAACAAGTTATTATGAGAGATATTCATCGAACATTTCCTGCTCACGAGTATTTCAAAGAATCTGGAGGAAAGGGTCAAGAATCGTTATACAAGATCAGTAAA------------------------------------------------------------GTGTACTCATTGTATGACGAGGAAGTATCATATTGTCAGGGGCTTTCATTTTTAGCTGCTAGTTTATTGTTGCAT-------------------------------------------------ATGCCAGAAGAGCAAGCATTTTGTACTCTGGTGAAGATTATGTTTAAATATGGCCTCAGAGACCTTTTCAAGTTAGGTTTTGATAACTTGCACCTGCGTTTCTTCCAGCTCACTGCTTTATTGAAGGTAAGTTC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   120713 490 -   161274 TTTCCAGGTATCTGAATCTTTGGAACTTGTCGAGCAATATAATGTTTTGATTACACAACCGTGCCCATCAGAGCAAATAATTATGAGAGATATTCATCGGACATTTCCAGCTCATGATCATTTCAAACATGCAGGCGGAGATGGGCAACAATCATTATACAACATAAGTAAAGTTAGTTAGTtgataatttgattttttgttgttgtatttTTATGCATCATTATATTTCAGGTCTACTCTTTGTATGACGAAGAAGTTTCATATTGCCAAGGACTTTCGTTTTTGGCTGCTAGTTTATTGCTACATGTAAATATTTAGTTTTTCAATAGAATGTACATATAAAACAGATATTCAGATGAAAGAAGAACAAGCGTTCTGTACACTTGTACGAATAATGTTCAGTTATGGATTACGCGACCTTTTCAAGTTAGGGTTTGACAATTTACACCTGCGTTTTCATCAATTAACATGCCTATTAaaggtacgttt
i caeJap4.Scaffold17495 I 515 C 0

a score=-115.000000
s ce10.chrX               929866 11 + 17718866 GGTAATACGca
s cb4.chrX              21324755  9 - 21540570 --ttattctCA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       162030 11 +   783054 CGTCAGAACCA
i caePb3.Scfld02_62     C 0 I 22
s caeJap4.Scaffold17495   121203 11 -   161274 ttttttattca
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     30645 17 -   118955 I
e caeRem4.Crem_Contig24   667257  0 -  1162296 C

a score=78.000000
s ce10.chrX               929877 2 + 17718866 cg
s cb4.chrX              21324764 1 - 21540570 -G
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17495   121214 2 -   161274 ca
i caeJap4.Scaffold17495 C 0 I 8
e caePb3.Scfld02_62       162041 22 +   783054 I
e caeSp111.Scaffold412     30645 17 -   118955 I
e caeRem4.Crem_Contig24   667257 0 -  1162296 C

a score=477.000000
s ce10.chrX               929879 10 + 17718866 tggagtcaga
s cb4.chrX              21324765 10 - 21540570 TGAGCTCAGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       162041 22 +   783054 I
e caeJap4.Scaffold17495   121216  8 -   161274 I
e caeSp111.Scaffold412     30645 17 -   118955 I
e caeRem4.Crem_Contig24   667257  0 -  1162296 C

a score=-5531.000000
s ce10.chrX               929889 352 + 17718866 gtgtcgcattttggtttgatctacaaaaattgccggaatttagacgaaggtttctcagctaattttgcatcgtcaagagtgtgctgacgtctcattttttgggcgaaaaattcccccattttttattgatcaaacctcaatgggacatcctaacactacgtgAATACATACACTTCAAGAGACTAAAAATAATTCACCCTGTGAGGCTTTTTTATTAGATGAAAATATTGGATCCCTTGCTAGGCTTCTGAGAATGTAATACTACTCTTCTTGGTCGACTTTTACATTATTATTTAGATTATTAATTGGTTGCTCACCAACACATTGAATTATCTAAAAAAAAATTACGCAA
s caeRem4.Crem_Contig24   667257 131 -  1162296 ----------------TGActcttgaaaattcaaaaaatct---------------------ttataCACCTACA-----------------CctattttgagtgaaaacccAGACCATTTC--------CAGTCTTCAA---GTTAAACCACCAATAC-----------------------CCAAAATCTATTCTCCAC-----------------------------------------------CTATGAATGT----------------------TTTTACATT----------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       162041  22 +   783054 I
e caeJap4.Scaffold17495   121216   8 -   161274 I
e cb4.chrX              21324775   0 - 21540570 C
e caeSp111.Scaffold412     30645  17 -   118955 I

a score=0.000000
s ce10.chrX               930241 3 + 17718866 CAT
e caePb3.Scfld02_62       162041 22 +   783054 I
e caeJap4.Scaffold17495   121216 8 -   161274 I
e cb4.chrX              21324775 0 - 21540570 C
e caeSp111.Scaffold412     30645 17 -   118955 I
e caeRem4.Crem_Contig24   667388 0 -  1162296 C

a score=233.000000
s ce10.chrX               930244 13 + 17718866 TGTAAAACTTCAG
s caeJap4.Scaffold17495   121224 10 -   161274 TGTAACACTT---
i caeJap4.Scaffold17495 I 8 C 0
e caePb3.Scfld02_62       162041 22 +   783054 I
e cb4.chrX              21324775  0 - 21540570 C
e caeSp111.Scaffold412     30645 17 -   118955 I
e caeRem4.Crem_Contig24   667388  0 -  1162296 C

a score=-140.000000
s ce10.chrX               930257 13 + 17718866 AATTTTGTGAAAT
s cb4.chrX              21324775 13 - 21540570 AATATTCTTAAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     30662 13 -   118955 aatatttgaaaat
i caeSp111.Scaffold412  I 17 I 6
s caeJap4.Scaffold17495   121234  6 -   161274 ----TTTGTA---
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       162041 22 +   783054 I
e caeRem4.Crem_Contig24   667388  0 -  1162296 C

a score=148853.000000
s ce10.chrX               930270 152 + 17718866 TTCCAGGATTATATACCTGATCTTTCGCATCACTTGGAACATATCGGCATTGAAACACATATGTACGCATCTCAATGGTTTTTGACGCTTTTCACCGCAAAATTCCCACTTCAAATGGTGTTTTTCATTTTGGATTTATTTTTGAGTCAGGT
s cb4.chrX              21324788 152 - 21540570 TTATAGGATTACATACCCGAACTGTCTATTCATTTGGAGCATATCGGCATTGAAACTCATATGTATGCATCTCAATGGTTTCTAACTCTTTTCACTGCCAAGTTTCCTTTGCAAATGgtgtttttcattttggatCTGTTTCTGAGTCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   667388 150 -  1162296 --TCAGGACTATATACCCGAGCTTTCACATCATCTCGATCATATCGGCATTGAAACACATATGTACGCATCTCAATGGTTTTTGACGCTATTTACCGCAAAGTTCCCGCTTCAAATGGTGTTTTTTATTCTAGACTTGTTCCTGAGTCAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30681 152 -   118955 TTACAGGATTATATACCCGAATTATCGCATCATCTTGATCATATCGGCATCGAAACACATATGTATGCATCTCAGTGgtttttgacacttttcacAGCAAAATTCCCACTTCAAATGGTGTTTTTCATATTGGACTTGTTCTTGAGCCAGGT
i caeSp111.Scaffold412  I 6 I 1
s caePb3.Scfld02_62       162063 152 +   783054 TTGCAGGATTATATACCCGAACTTTCACATCATCTTGATCATATTGGTATTGAAACACATATGTATGCATCTCAATGGTTTTTAACGTTGTTCACGGCGAAGTTCCCACTTCAAATGGTGTTTTTTATTCTCGATCTATTTTTGAGCCAGGT
i caePb3.Scfld02_62     I 22 C 0
s caeJap4.Scaffold17495   121240 151 -   161274 -TCTAGGATTATATACCCGAGTTGTCTGAACATTTTGACAGTATTGGGATTGAAACTCATATGTACGCGTCACAATGGTTTCTGACATTATTCACGGCCAAGTTTCCGCTTCAAATGGTGTTTTTCATATTGGACAtttttttAAGTCAGGT
i caeJap4.Scaffold17495 C 0 I 448

a score=-3938.000000
s ce10.chrX               930422 4 + 17718866 -AAGT
s cb4.chrX              21324940 4 - 21540570 -aagt
i cb4.chrX              C 0 I 453
s caeRem4.Crem_Contig24   667538 4 -  1162296 -ATGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     30834 3 -   118955 -AAA-
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       162215 3 +   783054 -ACC-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   121839 4 -   161274 aatt-
i caeJap4.Scaffold17495 I 448 C 0

a score=-5097.000000
s ce10.chrX               930426 34 + 17718866 ATTTTTTTAG----AATAGGATCAGT---TAAGAATATCTA
s caeRem4.Crem_Contig24   667542 30 -  1162296 ---CTTCTat----aa----gtttttcaaacaaaaattttc
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold412     30837 24 -   118955 ------ATGT----AA----ATCAGT---GTAGAAATCCTA
i caeSp111.Scaffold412  C 0 I 9
s caePb3.Scfld02_62       162218 28 +   783054 ------TTGTTCccaa----atcatt---tgaaaaattata
i caePb3.Scfld02_62     C 0 I 8
s caeJap4.Scaffold17495   121843 28 -   161274 --aatttcgc----AA----AACAAT---tcataaacattt
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21324944 453 - 21540570 I

a score=89587.000000
s ce10.chrX               930460 99 + 17718866 TCTTCAGGGAATGAACACGATCTTCCATATATCACTTGCATTGCTCGATGATGCAAAGACCGATCTTTTGCAGTTAGATTTTGAGGGAACCCTAAAGTA
s cb4.chrX              21325397 99 - 21540570 ttttcaggGAATGAACACAATTTTCCACATTTCTCTCGCCTTGCTTCATGACGCAAAAACCGACTTGTTGCAGTTGGATTTTGAAGGAACTCTCAAGTA
i cb4.chrX              I 453 I 31
s caeRem4.Crem_Contig24   667576 99 -  1162296 ttttcagggAATGAATACAATCTTCCACATCTCCCTCGCACTGCTTCATGATGCAAAGACCGACTTGTTGCAATTAGATTTTGAAGGAACGCTGAAGTA
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold412     30870 99 -   118955 ttttcagggaatgaacactatttttcatatttctcttGCCTTACTTCATGATGCTAAAACTGATCTTTTGCAATTAGATTTTGAAGGAACTTTGAAgta
i caeSp111.Scaffold412  I 9 C 0
s caePb3.Scfld02_62       162254 99 +   783054 TATTAAGGGGATGAAcacaatttttcacatttctctcGCACTTCTTCATGATGCTAAAACGGATTTACTGCAACTCGATTTTGAAGGAACACTCAAGTA
i caePb3.Scfld02_62     I 8 C 0
s caeJap4.Scaffold17495   121871 98 -   161274 -tttcagggCATGAACACCATTTTCCATATATCGCTGGCTCTTTTACACGAAGCAAAAACTGATTTGATACAATTGGATTTTGAAGGATCATTGAAGTT
i caeJap4.Scaffold17495 C 0 C 0

a score=-8420.000000
s ce10.chrX               930559 33 + 17718866 AGACTACCTG---CAATTTGCAAATGAAT-----CAATAAA----
s caeSp111.Scaffold412     30969 19 -   118955 a-------------attttct--ttcagt-------atAAA----
i caeSp111.Scaffold412  C 0 I 20
s caePb3.Scfld02_62       162353 36 +   783054 Ag--tgtcaa---tattttttgattcatttccgACAACAAA----
i caePb3.Scfld02_62     C 0 I 6
s caeJap4.Scaffold17495   121969 36 -   161274 --AGTGGAAAATCAAAGTTAAAATGAGAT-------ATAAGCCAA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21325496 31 - 21540570 I
e caeRem4.Crem_Contig24   667675  0 -  1162296 C

a score=73435.000000
s ce10.chrX               930592 103 + 17718866 ---ACTATTTTCAGATACTTCCGTGTGTCCCTTCCCCGCAAATACCGTACCGAGGCGTCGACCAAGTGCCTGATTCATAAAGCCGTGAAATTCCGTTTGAATCATA
s cb4.chrX              21325527 103 - 21540570 ---AcagctttcagatatttccgTGTCTCTCTGCCTAGAAAGTATCGTACTGAAGCTGCAACCAAGTGTTTGATTCACAAAGCAGTCAAATTTCGACTGAACCACA
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig24   667675  89 -  1162296 -----------------CTTCCGTGTATCCCTTCCAAGAAAATACCGTACCGAAGCAGCCACTAAGCAGCTGATTCATAAAGCTGTAAAGTACCGTCTGAATCATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     31008 103 -   118955 ---atatttttcagatattttcgTGTTTCTCTTCCACGCAAATATCGTACCGAAGCAGCAACAAAATGCCTAATCCACAAGGCTGTAAAATTTCGATTGAACCATA
i caeSp111.Scaffold412  I 20 C 0
s caePb3.Scfld02_62       162395 100 +   783054 ------TTTTACAGATACTTCCGTGTTTCTCTCCCACGAAAATACCGCACCGAAGCAGCTACCAAGTGTTTGATCCAGAAAGCTGTGAAATTCCGTTTGAATCATA
i caePb3.Scfld02_62     I 6 I 1
s caeJap4.Scaffold17495   122005 106 -   161274 AATTACATTTGCAGATATTTTCGTGTTTCTCTTCCAAGAAAATACAGAactgaaaatgcaacaaaacGACTGATTCACAGAGCCGTTAATTTTAAACTTAATCATA
i caeJap4.Scaffold17495 C 0 C 0

a score=476.000000
s ce10.chrX               930695 1 + 17718866 G
s cb4.chrX              21325630 1 - 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   667764 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     31111 1 -   118955 G
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495   122111 1 -   161274 A
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       162495 1 +   783054 I

a score=383983.000000
s ce10.chrX               930696 542 + 17718866  
s cb4.chrX              21325631 504 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   667765 509 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 30
s caeSp111.Scaffold412     31112 459 -   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       162496 507 +   783054  
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495   122112 505 -   161274  
i caeJap4.Scaffold17495 C 0 C 0

a score=-2936.000000
s ce10.chrX               931238  5 + 17718866 TTT--TT--------
s cb4.chrX              21326135  5 - 21540570 --TGCTT--------
i cb4.chrX              C 0 I 35
s caeSp111.Scaffold412     31571  5 -   118955 ttt--tt--------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       163003  7 +   783054 tctgatt--------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122617 14 -   161274 -TTAATTGACCTTGT
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=-3230.000000
s ce10.chrX               931243 20 + 17718866 ---TTGTTAGTTGGAAA-------AGTCCA
s caeSp111.Scaffold412     31576 14 -   118955 ---tt-----tcagaga-------agtaA-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       163010 22 +   783054 ---tt-----tctgaaacttttgtaGTAAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122631 22 -   161274 TACTT-----AATTAAA---TTATATTCAA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21326140 35 - 21540570 I
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=-1001.000000
s ce10.chrX               931263  1 + 17718866 C-------------------
s caePb3.Scfld02_62       163032 20 +   783054 TTTTGGATGAAGAAGACAAC
i caePb3.Scfld02_62     C 0 I 180
e caeJap4.Scaffold17495   122653  0 -   161274 C
e cb4.chrX              21326140 35 - 21540570 I
e caeSp111.Scaffold412     31590  0 -   118955 C
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=488.000000
s ce10.chrX               931264 32 + 17718866 ATAGACCAAACTGGAATAATATCGGTTTCTTT
s caeSp111.Scaffold412     31590 29 -   118955 ATGTTCCTA---GTAATATtgactgtttcttt
i caeSp111.Scaffold412  C 0 I 27
e caePb3.Scfld02_62       163052 180 +   783054 I
e caeJap4.Scaffold17495   122653  0 -   161274 C
e cb4.chrX              21326140 35 - 21540570 I
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=0.000000
s ce10.chrX               931296 167 + 17718866 GAGAGCGATCTGACATTATTTGAGTTCTACGCcacgtgttgtcaggctgtccccttacggtttgacctaaaaaaaatgcgggaattttctcgcccagaaaaatgtgacttcagcacgttctctgcgtttcaactctcgcattttttgtagatctacgcataacaaac
e caePb3.Scfld02_62       163052 180 +   783054 I
e caeJap4.Scaffold17495   122653   0 -   161274 C
e cb4.chrX              21326140  35 - 21540570 I
e caeSp111.Scaffold412     31619  27 -   118955 I
e caeRem4.Crem_Contig24   668274  30 -  1162296 I

a score=-560.000000
s ce10.chrX               931463 244 + 17718866 cgaaatgagacactctggcac----cacgCTTATACTCAAACTACTTGTCGACGTAAAAGTTTTAGAACCACCAGAATTTGCGCGCCAATTCAAAC-----TTTCAGCAATATCAAGTTGCCCATGATTATGTGCGTTCTTTAATAAATGTTCC--CTTGCCAACTTATACATGATCAGATTTCAAATAACTCAATATTTTTCTAATATCAATATCACACCAAATTATGAACTGTAAAATTGCCAAAAGTGTAGA
s caePb3.Scfld02_62       163232 202 +   783054 TGAAAACATACATATTGACACGTTTCCTGCTCAGTTTTGATCAAATCGTTGACGAAAGACGATTTGCACT-----GAATTACATGACatttgaaacacattttttgttgatgtccaat---------ttttctgctttttagaaaaaatctagCAGCATCTTCGCttat------------------------aatgtttttttatgagca--accacaac--------aactgaaaaat-----gaggcaTAAT
i caePb3.Scfld02_62     I 180 C 0
e caeJap4.Scaffold17495   122653   0 -   161274 C
e cb4.chrX              21326140  35 - 21540570 I
e caeSp111.Scaffold412     31619  27 -   118955 I
e caeRem4.Crem_Contig24   668274  30 -  1162296 I

a score=150.000000
s ce10.chrX               931707  9 + 17718866 GAAAAAA-----AT
s caeSp111.Scaffold412     31646  7 -   118955 --GAAAA-----AT
i caeSp111.Scaffold412  I 27 C 0
s caePb3.Scfld02_62       163434 12 +   783054 --TAAAATtcacat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122653  0 -   161274 C
e cb4.chrX              21326140 35 - 21540570 I
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=-12.000000
s ce10.chrX               931716 3 + 17718866 TCA
s cb4.chrX              21326175 3 - 21540570 TTA
i cb4.chrX              I 35 C 0
s caeSp111.Scaffold412     31653 3 -   118955 ATT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       163446 3 +   783054 tta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122653 0 -   161274 C
e caeRem4.Crem_Contig24   668274 30 -  1162296 I

a score=-58.000000
s ce10.chrX               931719 3 + 17718866 TGT
s cb4.chrX              21326178 3 - 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   668304 3 -  1162296 tgt
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold412     31656 2 -   118955 -AC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       163449 2 +   783054 -tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122653 0 -   161274 C

a score=108953.000000
s ce10.chrX               931722 139 + 17718866 TCCAGGCAAGAATCTCCGACTGCGACAAATGCTGGCCAGCAGTTTGTGAATGGGAGAAGAATCGGAGTCCAGTGCATTCGGCTTCCACACCAACCGGACCAGATTTGCTCACGAAATTGGAGGAACGAGAAGATCATAT
s cb4.chrX              21326181 139 - 21540570 TTCAGGCCAGAATCTCTGAGTGTGACAAATGCTGGCCATCAGTTTGtgaatgggaaaaaaatcggagcccGGTTCACACCGCGTCCACACCCATCGGTCTCGACCTGTTGACAAAGTTGGAAGAAAGAGAGGATCATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   668307 139 -  1162296 tATAGGCTAGAATATCTGAATGTGACAAGTGCTGGCCGTCGGTTTGCGAATGGGAGAAGAATAGAAGTCCAGTCCACACAGCATCTACACCCACTGGACTTGACTTGCTGACAAAACTAGAAGAACGAGAGGATCACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     31658 139 -   118955 TCCAGGCTCGAGTTTCGGAATGTGATAAATGCTGGCCGTCAGTTTGTGAATGGGAGAAAAACAGAAGCCCAGTACATTCAGCATCAACACCAACTGGACTTGACCTTTTAACAAAATTAGAAGAACGAGAGGATCATAT
i caeSp111.Scaffold412  C 0 I 399
s caePb3.Scfld02_62       163451 139 +   783054 ttcaggCACGAATCTCAGAATGCGACAAATGTTGGCCTTCCGTATGCGAGTGGGAGAAGAACAGGAGTCCAATTCATAATGCATCCACACCTACCGGTCTCGATTTGCTAACAAAATTGGAGGAGAGAGAAGATCATAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122653 139 -   161274 TTTAGGCCAGGATATCGGACTGTGATAAGTGTTGGTCAGCTGTGATTGAATGGGAACAAAGTAGGATTCCTGCTAATATATCGAGTGCAACGGGCGGTGTTGATATTCTAGCAAAATTAGACGAACGAGAGGATCATAT
i caeJap4.Scaffold17495 C 0 C 0

a score=574.000000
s ce10.chrX               931861 3 + 17718866 CAA-
s cb4.chrX              21326320 3 - 21540570 CAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   668446 3 -  1162296 CAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     32196 3 -   118955 AAA-
i caeSp111.Scaffold412  I 399 C 0
s caePb3.Scfld02_62       163590 3 +   783054 CAA-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122792 3 -   161274 -AAA
i caeJap4.Scaffold17495 C 0 I 298

a score=101590.000000
s ce10.chrX               931864 172 + 17718866 GTTTGTGATAT-----CATTTTTAGTATACTAATTCGCTAATTGCTAA-ACTTTTTTTCAGAAATCTCGAAATCGATCTGGCACAAACGAAACTATCATTGGTGGAAGCCGAGTGCCGCAATCAAGATTTGACGCATCAGTTGATGGCTCAAAGTGAAAGTGATGGGAAGAAGTGAGT
s cb4.chrX              21326323 162 - 21540570 GTGACATTTTT----CCATC------------AGTCACAATTcacctttaaatttttatagGTCACTCGAAATAGACCTTGCTCAAACAAAATTGTCGTTGGTTGAAGCAGAGTGTCGGAACCAAGATCTCACTCATCAGCTAATGGCTCAGAGTGAAAGCGATGgcaaaaagtgagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   668449 160 -  1162296 GCAAGCATTGG----ATATCTT----------GATTTAAAATAAC----AAAAGCTTTCAGATCGCTCGAGATTGACCTAGCACAAACGAAACTGTCACTGGTAGAAGCTGAATGCCGGAATCAAGATTTGACGCATCAGTTGATGGCTCAAAGTGAGAGTGATGGGAAGAAGTGAGT
i caeRem4.Crem_Contig24 C 0 I 522
s caeSp111.Scaffold412     32199 153 -   118955 GTCTATTACAG---------------------ATTTTACGGTATC----TGTTCATTATAGATCTCTTGAAATTGATCTGGCACAAACGAAATTGTCATTGGTTGAAGCGGAGTGCCGGAATCAAGATTTAACGCATCAGTTGATGGCTCAAAGTGAGAGtgatggaaaaaagtgagt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       163593 161 +   783054 GTTGGTCATTGccaaatgtttt----------attttccagt-------tttttctttcaggtcCCTCGAAATTGATTTGGCACAGACAAAATTATCGTTGGTGGAAGCAGAATGCCGGAATCAAGATTTGACGCATCAACTaatggctcaaaatgaaagtgaTGGGAAAAAGTAAGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   123093 145 -   161274 ---------------------------------GTTTATGAtctatgtgtttttttttcagatctcTTGAAATTGATCTAGCACAAACCAAACTATTGCTGGTGGAAGCGGAATGCCGAAATCAAGATTTGACGCATCAGTTAATGGCTCAAACtgaaaatgacggaaaaacgttagt
i caeJap4.Scaffold17495 I 298 C 0

a score=-2361.000000
s ce10.chrX               932036 3 + 17718866 GTT-
s cb4.chrX              21326485 2 - 21540570 -tt-
i cb4.chrX              C 0 I 1114
s caeRem4.Crem_Contig24   669131 3 -  1162296 ata-
i caeRem4.Crem_Contig24 I 522 C 0
s caeSp111.Scaffold412     32352 2 -   118955 -ca-
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       163754 2 +   783054 -TC-
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495   123238 3 -   161274 -ttt
i caeJap4.Scaffold17495 C 0 C 0

a score=-5422.000000
s ce10.chrX               932039 15 + 17718866 ----AGAAGAGTTTGTGTA
s caeRem4.Crem_Contig24   669134 15 -  1162296 ----attcaattttctctc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     32355 15 -   118955 ----AATGTATTTTTATGA
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       163757  9 +   783054 ----AA------TTCAGGT
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495   123241 15 -   161274 ttggaaaattgtttA----
i caeJap4.Scaffold17495 C 0 I 10023
e cb4.chrX              21326487 1114 - 21540570 I

a score=-2542.000000
s ce10.chrX               932054 21 + 17718866 TTTGCAAATAAAATTTAAA--AA
s caeRem4.Crem_Contig24   669149 19 -  1162296 tccacaagccaaatctatt----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     32370 14 -   118955 CTAAAAAACAAAGT---------
i caeSp111.Scaffold412  C 0 I 224
s caePb3.Scfld02_62       163766 21 +   783054 TTCGAAAACTACCTTGATact--
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21326487 1114 - 21540570 I

a score=36882.000000
s ce10.chrX               932075 180 + 17718866 TTTCAGATGGTTCAAGAAAACAATCACGCAGTTGAAGGAAGTTGGTAGCTCGTTGAAGCATCATGAACGATCGAATAGCTCAGTGACGCCGTGAACAAA--TTTTAAATTGGTCataatttat--------ttatttattt-------ttat-CTGCTTTGTGAATATATTTAAATGAAAAGTTT-----CAGATTT------TTATTA------------------------
s cb4.chrX              21327601 186 - 21540570 tttcagatggttcAAAAAGACGATCACACAACTCAAAGAAGTTGGCAGCTCCCTCAAACATCATGAACGCTCCAACAGCTCAGTGACTCCGTGAATGCAGTTACT-----------GAATTGT--------gcattttaactttttttttagtttgctTCATG--TATTTTATATtcacaaaaatgaa--caaatttgaaatattatcA------------------------
i cb4.chrX              I 1114 C 0
s caeRem4.Crem_Contig24   669168 142 -  1162296 tttcaggtgGTTCAAGAAGACGATAACACAGCTGAAAGAAGTCGGTAGCTCTCTGAAGCATCATGAACGATCGAATAGCTCTGTCACCCCATGAATACG-------------------------------------------------TCAG-TCGCTTTGTA--------ATACTGCTGAATATAAC--GATATTT----cttta---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     32608 197 -   118955 TTTCAGGTGGTTCAAAAAGACAATAACTCAACTGAAGGAGGTCGGAAGTTCCCTGAAACATCACGAACGATCGAACAGTTCAGTGACTCCATAAACTAAAGTCTCTAG--------AAATTAT--------GAACcttaat-------ttattttgattc-----------tgaatgatGAAATCGAGtgaatattt--aatttttttaattgacagttttttatttctactA
i caeSp111.Scaffold412  I 224 I 116
s caePb3.Scfld02_62       163798 175 +   783054 tttcagatggttcaAGAAAACAATCACTCAATTGAAGGAGGTCGGGAGTTCTTTGAAGCATCATGAACGTTCGAATAGCTCAATGACCCCATGAACAGAAATATTGTGTTAAT--TAATTCATCTTTGGCAGAATCctaat-------ttattttaatt------------tgaataataaattcCAGT-CATATTT------------------------------------
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I

a score=29.000000
s ce10.chrX               932255 1 + 17718866 A
s cb4.chrX              21327787 1 - 21540570 A
i cb4.chrX              C 0 I 310
s caePb3.Scfld02_62       163973 1 +   783054 G
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e caeSp111.Scaffold412     32805 116 -   118955 I
e caeRem4.Crem_Contig24   669310 0 -  1162296 C

a score=-740.000000
s ce10.chrX               932256 20 + 17718866 --ATTTGGTGCATTTTCTGAAT
s caeRem4.Crem_Contig24   669310 13 -  1162296 --aattaatttattt-------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       163974 19 +   783054 CCCTGTTGTTTATCT---GAAT
i caePb3.Scfld02_62     C 0 I 110
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I
e caeSp111.Scaffold412     32805 116 -   118955 I

a score=-3534.000000
s ce10.chrX               932276 325 + 17718866 TATTAGTACAATTTAA--GAGGATACGGTGTTGATCAAAAAAACTCAAGTAGAGTAGAAAATTATTTTTAGTAGATGAAAAAACTTTTCAGTAAATTTTCGAACTCTTTTTCTTCACATTATATAATTGTTAGTATGGTGTGCTAATTTTGTAAATTAAGTTGTCAATTAAATTTTGAAAAAAAGTTATACGTTCCACCTGAACGAGGATTGATATACGTTCCTGAGCACATTTAAAGTTTTGGTGGCACATTTTTTTTGTAATATTAAGTTTGTAATTTGAAAGTTACATGCATGAATTTCTGTAATTTTTATATATGGAATAACG
s caeRem4.Crem_Contig24   669323 148 -  1162296 --ttattgtacTTTGATGAATGGTTTGTAGTTG------------TATGTATGTCATTAATTTGTTGCTGG-----GAAACaaccttc------atttttg----------------------------------------------------------------atttagtttgtgaaaaaa---------------------------------tcagtCCCGAGTgga-------------------------tttttgacataaaatt----------------------tgaatttccgtG----------ATGAAATACCG
i caeRem4.Crem_Contig24 C 0 I 43
e caePb3.Scfld02_62       163993 110 +   783054 I
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I
e caeSp111.Scaffold412     32805 116 -   118955 I

a score=0.000000
s ce10.chrX               932601 99 + 17718866 CATTCAACTACTCAGTTGTGAGCTCGGAAGTGGTGGAACTTCAGAAAATAAAATTTCCAGAAACCAATCTTCGGAACCTATACCCTCATGATTCTGTAG
e caePb3.Scfld02_62       163993 110 +   783054 I
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I
e caeSp111.Scaffold412     32805 116 -   118955 I
e caeRem4.Crem_Contig24   669471 43 -  1162296 I

a score=28.000000
s ce10.chrX               932700 12 + 17718866 CATGTAATCTCC
s caeSp111.Scaffold412     32921 12 -   118955 CAAttactttta
i caeSp111.Scaffold412  I 116 C 0
e caePb3.Scfld02_62       163993 110 +   783054 I
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I
e caeRem4.Crem_Contig24   669471 43 -  1162296 I

a score=-2111.000000
s ce10.chrX               932712 50 + 17718866 -AAAATGCATGTGAAAGATCACATTCCATCAAATTTTTTATGTACTTTACA---
s caeRem4.Crem_Contig24   669514 31 -  1162296 -aaaatgtatccgga-------aat---tcaaatcattcaaa------------
i caeRem4.Crem_Contig24 I 43 C 0
s caeSp111.Scaffold412     32933 43 -   118955 aaaaacttgactgaa----ttcatt---tcaaggTACTTTTA----CTGCATCG
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       163993 110 +   783054 I
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I

a score=1243.000000
s ce10.chrX               932762 263 + 17718866 AAAAAATGTACT---------TCCT-------TTTCTTTTCTTTGCATACAAAAATTGTCATTCGGATAATGC-----------------------------ATTC----------AATTTCATTTTGTCATCGCATTTTCCATTTTCTCCCGCCATTTTGCTTTCTTTTCCAAATCCCTTCCCCAATCTTTTC--------------GTTTCTACCCTCC------AAAGAGACGAAGGAAGATTTCCTGATTCCACGGACCTCTGAG-----------CTCGTGGAGCTCCTAC-----------------------------------GTGTGTGTGTGTCTCTGTGCTCGGCGAAGCTCGACGAAGTAGCGGAGATCCCA
s caeRem4.Crem_Contig24   669545 236 -  1162296 -----------------------------------------------------------------------------------ttccaattattttctcgcaattc----------aatttcattttgtcctcgt---------------------ttttcttttcttttgtcctcc---------ctctttttctccccgcaacgaatatttctttcttc------ggcgaaaaagaagaagatttcctGATTCCACGGACCTTTGGGCTCAGAGCGGTGCTTTGGAgctcttcc-----------ttttcttttcttaacGGGGGATTCGTGTGGACTGAG--CTGAGTgaagcaaag-agagaaaagaagaaagaa-----
i caeRem4.Crem_Contig24 C 0 I 21
s caeSp111.Scaffold412     32976 300 -   118955 AAAAGAAGGGCT--TCAACTATTATAACATGATTACtttttttACTG-----------------GGATCATGC---TTTatgtttccaat--tttcttttcaattcctattccagaaattcaattttgt----------------------------tttgttatcttttttcattc---ttcaaaaccttttt--------------tgttttcttcttccatcacagaaaagaaagagaagatttCCTGATTTCACGGACCTCTGGgcctta------tttttctatccctctcttctccttttcttcgcttttcTTAACGTGA-----ATGTGTACTGAGGTCTGTCGGAagcaaaa-gagaagaagcggatgagata---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       164103 272 +   783054 aaaatttgtactagtcaattatttt-------tctcttttttttccaaac-------------cggATAATGCAAATTTGAATCTCCTA---TTTCTTTCCAATTC----------AATTCCGTTTTGTcatcg-----------------------tttcgtttttttttctattc-ctttttgaatcttttt--------------tttatttttctttaaaaaaaaagaaaagaaagaagatttCCCGATTCTACGGGACTCTAGG-------------------TCCCTTCC-------------CGATTTTCTTAACGTGG-----ATGTGTAGTGAGCTCTgtgttgaagaaga-gaatcgaagagaaaaagaaa---
i caePb3.Scfld02_62     I 110 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21327788 310 - 21540570 I

a score=103437.000000
s ce10.chrX               933025 413 + 17718866 ---------------------GAGAGCATAGAGAAGACATGAGGGGGATAGCTG-----GAGCT-CTGTTTGAG-CACATATACGCAGACAAAGTAGCAAGCAAATTTTC--CACGCA-GCAAACTTATTATTCTGGC-ATAGATGTGAAAACAAAAAAGTGCGCAAAAAAGGGGAGAGTGGTGCGCA-------AATTTT--CC-----TTTTCTTTTT-------TGAAAATGAAGCTATTTAACTCttttttttttcttttttcttccctttttcctattttcttcta-atttttttt-------tcttCAATTTTCACTTAGTAAAGAAAAAGCTGAAGAAAAAAGGCATGCCTAGTAAAATCGATATGACAAATTGCCCTCATTTCTCACATTTAGACAGAAGAAAAGACGCTGAAGCTCAACTTCTTAACGGCTTCGTT---TTTTTCTTTTTTTTTTTAGTTTTTTCTTC
s cb4.chrX              21328098 388 - 21540570 ---------------------GGGGGAATAGAGAGGAACAGAGC-----AGCTC-----GAGCT-CTATGTGAGCCCCGCACGCGTAGACAAAGTAGCAAGCAAATTTTC--CACGCA-CCAAACTTATTATTCTGCC-ATCTatgtgaaaacaaaaaagtgtgcggaaaaaaGA-GAGTTCGCAGAGCTGCCTCACTATTTTTCTGccgtctttttttc-------aaaaaatgatgctATTTAACTTTTTTACT--------TCCTAATCTTTTTCGTCACCCCTTTTGCAGTCCCACT-------TTCCAAAGTGTC---------------TGTCCAAGAAGT-------GACTAGTATAATCGATTTGACAAATTGCCCTCGTTTTTCACATTCAGA------AAACAAAGCAGAAGCTCAACATCTTAACGgctcggtttt-tttttcgttttttcttcattcttttttc-
i cb4.chrX              I 310 I 455
s caeRem4.Crem_Contig24   669802 400 -  1162296 ---------------------agagagatggagagactcagaaC---ATagctctatgtgagct-ctatgtgag---cGCGCACGCAGACAAAGTAGCAAGCAAATTTTC--CACGCA-GCAAACTTATTATTCTGCC-ATAGatgtgaaaacaaaaaagtgcgcggaaaaagga-gagtgaaaagaaaTG----ACtgcttttt--ccgtttttttccctccttcgtgaaaatgaagctatttaactttatttttttcctttcttctaatcttttt--tcttcccggTTG-------AAT-------TTCTAAGGACTA---------------AAAATAAGCAGTGACATGCGACTTGCCAAATCGATATGACAAATTGCCCTCATTTCTCACATTTaga-----ggaaaaaagtggaagCTCAACTTCTTAACGGCTtggtctt-tttcttcttttgcgttttttttcttctt-
i caeRem4.Crem_Contig24 I 21 C 0
s caeSp111.Scaffold412     33276 401 -   118955 gagagag-cagcaaagatgtttggtggaaagagaggagcag--------agctctatgtgagcctctatgtgag--ccGAGCACGCAGACAAAGTAGCAAGCAAATTTTCTTCACGCAGCCAAACTTATTATTCTGCCAATAGatgtgaaaacgaaaaagtgtgcagaaaaaaagagagtgaaaagaa-------gcttcc--tc-----ttttttttta-------cgaagatgaagctattttactttatttgtta-------------tttttt--tcttactttcga-aatatttctcGTTGACTCCttgactttc---------------aaaaaataacatgTCATGCGACTGCTCTAATCGATATGACAAATTG-CCTCATTTCtcacattt-----------gaaaaacggaaGCTCAACTTCTTAACGGCCTCCTTTGGTTTTTTGCTCCaatttcactttcttttt-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       164375 381 +   783054 aagaaagatgaccaggata-acgggaaaaagagaggaacaga-------agCTGTATGAGAGCC-CGATGTAAG---CGCGCACGCAGACAAAGTAGCAAGCAAATTTTCTTCACACAGCCGAACTTATTATTCTGCCAATAGATGTGAAAAC--AAAAGTGcgcagaaaaaaag-------gaaaaa-------gctttctttc-----tttttttttc-------ttaggaAAATGCT-TTTAGCATCATTATTCACcactccc----tcttttt--ttttgcttcctg-TATAATACT-------TTCTTGAC------------------------------AGAGATGCAACtcggaaaatcaataagaCAAATTGCCCTCATTTCTTGCATTTAGA------AAGAAAGGCGGAAGCTCAACTTCTTAAcggctctct----ttttttcttctttttccgtttttttttg-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I

a score=581.000000
s ce10.chrX               933438 12 + 17718866 AAGCT-GCTTCCT
s caeRem4.Crem_Contig24   670202  9 -  1162296 ---cc-gctatcc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     33677 13 -   118955 tagtcAATTCTCT
i caeSp111.Scaffold412  C 0 I 547
s caePb3.Scfld02_62       164756 12 +   783054 tagcc-attttct
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I

a score=-180.000000
s ce10.chrX               933450 6 + 17718866 GTTTGT
s caeRem4.Crem_Contig24   670211 6 -  1162296 ttttgt
i caeRem4.Crem_Contig24 C 0 I 96
s caePb3.Scfld02_62       164768 4 +   783054 cttt--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-1049.000000
s ce10.chrX               933456 129 + 17718866 TATAAGATCAAGCCtatataattttaaaataattaaaattGTAAAGTCTAGGCTCTTGTAATGAG-GTGTTTTTTTTGTCACAATGTATATTATTAATTTTCAAGCGCTTATTTTCAGTTTCAGAACCCG
s caePb3.Scfld02_62       164772  70 +   783054 ---------------------------------tgaatgcGCAAAGGC--GGCATTTGT--TGAGAGTGTTTCT-----------GTACGATAGTGATTTTACATTATTTCTTGTCAG------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I
e caeRem4.Crem_Contig24   670217  96 -  1162296 I

a score=-6572.000000
s ce10.chrX               933585 112 + 17718866 TATTTTCTCGA-----AAAAAATTTTA-TTCTAAAATCGGCAAAATACTTGAACATTTGTTGCGTTAAGACTAAGTGTTCTGAAAACTCAATTTACGCCTAACAACAGAAATCATAAC
s caeRem4.Crem_Contig24   670313  97 -  1162296 TATTCCCTCAATTTATGCAAACCTCTACGTCAGCTGTTGTCAAAAT-----CACAACTGGAGAGGTGAGACAagatgaaatcaaaag----------------aatGGAGATTGGAGC
i caeRem4.Crem_Contig24 I 96 I 17
s caePb3.Scfld02_62       164842  37 +   783054 ----------GGTAATTAGAACTTTTA----------------------------------------GAACAAGTTTCTATCATCAG-------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-199.000000
s ce10.chrX               933697 27 + 17718866 TCCGACTAAATTTTATTTTCTTCAAGG
s caePb3.Scfld02_62       164879 13 +   783054 -------------CACTTTCTACAAA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I
e caeRem4.Crem_Contig24   670410 17 -  1162296 I

a score=-20408.000000
s ce10.chrX               933724 433 + 17718866 AATTGT-------AGCTTTATGTTTTTTGCTTCTTAT----TTCCACTTATGCTTTTAGACATTTTTCTTCAACTTTTCAACTGCAGATGGATCATACGGAAACCACAACTTCAAATAATATCGGATACAATTCGTCGTCTGAATCATTCGCGGTTCGTTTTATGCAAACGCCGTCAGCTGTTTTGAAAATAACCAA-------TGGAGAGGTAAAGTGATTTTAAATAACATGTTATTAGAGAAGGTGTAGTTTTGAAAGTAATAATGCCTAAA---GTCTAGACATGAAAATTCTCAAGTGGCTTGTACACTGAAAAACATCC--TAGTTTTTGAGATGGTTGTTTTT-------ATAACCACTCTGCCATATTAGT----------------GCAATTAATATGAGAAGTAAATATACAAACATGCTTTATTAGTAGTGCTGCACAGTTTCTAGAAATT---------AAAATAAATGAGTTAAA-------
s caeRem4.Crem_Contig24   670427 386 -  1162296 -------------AACTGTAAATCTGTCCTCTGgggt----tttcatgaaaaa-----------------cacaTTC---------------TTGTATAAAAAC--------AAGGTAAT----GAAATTtggaatcatttgaaaaaattcc---taATTTGAGAT--------CCTGCCACGTCTTAAAAATTTAACTATGATTTCTCAtgtaatttttgattcaacTACGCACTGATGGGAGAAACATAAT----GAACTGTTTCC--CTTAA---AGTAAAACTTAATAATTCCAA---------------GAGCAGAACGCAATAATTC---------CTTTCTTTCTTGGAGGTGCCCAATTTTCCATCTCAATTCCAAACGGAacggaaaaaacgaaaaaaagaag-agacaccGAAATTACCAATCACAGAAA---CGGACgttattctcaatttctgggcGGAGTCAAACCCAATGCTCGAATTAAA
i caeRem4.Crem_Contig24 I 17 C 0
s caePb3.Scfld02_62       164892 323 +   783054 ---TGCCGCTAAATACCGTATACCTCTTCTATTTTATCTTGTCTCGCAGATGA-----------GTTCTTCAAATCC---------------TCCCATTGATAT--------TGGTTTAT----GTTACAAACCATCATCTGAATCGTTTTC---CCATTTCAAGCAAGCGTCGTCCACTGTTGCTGAAAACAGTAA-------TGCAGAGGTAAAgtttgaatgaagt-------------------------------ttttttctggcttGATTTGACAGAATTtaatgaattttg---------------gaaaataatgc--taatct---------attttttt------------------------tcagt----aacgATAGGATAGTAAGTAAGGTCTAAGG-CAATATTAAAACt--------cgggaa-----------attttgaaatt---------acaaaaaataaggCACA-------
i caePb3.Scfld02_62     C 0 I 106
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-1266.000000
s ce10.chrX               934157 109 + 17718866 --AGATGCTCATTATAATTCGCAAAAGTAATTTTTTCCCATTATAAGATAGGTTTCTAAAAATAAATAATTAACGTTTCTGTGGGAATTTACTCTACTAAAAACCCCAACC
s caeRem4.Crem_Contig24   670813  68 -  1162296 TTGGGTGGTTCTTCTTATTcg---atcttatttttctttattttcacaCCTATCTCAAGACATGTCTTGTT----------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       165215 106 +   783054 I
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-3907.000000
s ce10.chrX               934266 104 + 17718866 ----AAAAAAGAGCAAAAGTTAAGTTGCACAAAAGTATGAATAGTTTGAAAATGTTTGGAACAATAAATAATTTTTGTCCTTGACTACTTTTTCCTACTCATTTATGA
s caeRem4.Crem_Contig24   670881  91 -  1162296 GTGAAGTAGTATTCAAAAGCGTGTATTCCTTAGTGGATG---GTTTT---ATTCCACGAAACTCAAAGT-----------TTGAGCGtttctttcattcaaaatataa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       165321  84 +   783054 ----aaaaaaaggcagCTGATTACATGaccaaaaatgag---atttcgaaatttcctgtaatagaa----------------gagcatCCCTAGCAAAT-GAGTATAA
i caePb3.Scfld02_62     I 106 C 0
e caeJap4.Scaffold17495   123256 10023 -   161274 I
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-10521.000000
s ce10.chrX               934370 75 + 17718866 GCTTTTG---AAAAACCAAGATTATTTATACAATTTTTTTCAACTTTATAAGATATTAAGTATTTC--------GAAAACTAGCTC
s caeRem4.Crem_Contig24   670972 42 -  1162296 tgttttggtaagaaat-----tcattatttc-------------------aagcaaaaaacatttc--------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       165405 39 +   783054 C---------AGGAAC-----ATACTGATAC--------------------AGCAaagtttatttc--------agaaatt-----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   133279 75 -   161274 -gttttct--gaaaacaaaaattgtgtactt------tttttaaatgagaaaaaaagttgtGTTTTCTTTCTAAAAAGATTGTC--
i caeJap4.Scaffold17495 I 10023 C 0
e cb4.chrX              21328486 455 - 21540570 I
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=-14680.000000
s ce10.chrX               934445 40 + 17718866 ---------------------TATTCT-----CAGAACAATAATTTTTAAATTCAATAAACCGCTG
s cb4.chrX              21328941 29 - 21540570 ---------------------Tgcttt-----tgaaacaaaaacttccAATGT---------GC--
i cb4.chrX              I 455 C 0
s caeRem4.Crem_Contig24   671014 14 -  1162296 ---------------------cattTT---------------ACTTCC--------------TT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       165444 16 +   783054 --------------------------------ttcaacaa--tttttcaa----------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   133354 45 -   161274 TACATTTAGGATTGTCTACATTATTTTGACAGTCAAATAAT-ACTG--------------------
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412     33690 547 -   118955 I

a score=81729.000000
s ce10.chrX               934485 156 + 17718866 --GAATTTCCAGATGACTGAGGACAATAACAATATGCTGCATGGAATTAATGGTGTTGACTTGCTGGATTTGCAAAGTACTGATAACGACGATCAATACTCAAATTCAAGCAGTTTGGAGTCAAGGAACTCTCTGACAAATCATCAGGGTA------AAGCTGA------
s cb4.chrX              21328970 150 - 21540570 --AATTTTAAAGGTTAgcgaaaacaacaacaacatgCTTCATGGTATCAATGGAGTAGGTTTGATAGACTTGAAGAGCACTGATAACGAAGACCAATGCTCGCATTCAAGCAGTCTAGAATCGCGGAACTCACTTACAAACCACCAAGGca------a------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   671028 156 -  1162296 --CATTTTATAGATCAATGAAGACAACAACAATATGCTGCATGGCATCAATGGCGTTGCCTTGATTGACTTGAATAGTACTGATAACGATGACCAATACTCACACTCCAGCAGTTTAGAGTCTCGAAACTCTCTCACTAACCATCAAGGTACAAAACA------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34237 150 -   118955 --GAATTTTAAGATTAATGAAGACAATAACAATCTGCTGCACGCTATCAGTGGTGTAAAACTGCTTGATTTGAAATGTACTGATAACGAGGATCAATACTCAAATTCAAGTAGTCTAGAATCACGGAACTCTCTTACAAATCATCAAGGTA------A------------
i caeSp111.Scaffold412  I 547 C 0
s caePb3.Scfld02_62       165460 150 +   783054 ----atttgtagaCAAGCATAGACAACAATAACTTGCTGAACGCTATCGATCATGTAGAACTTCTCAACTTGAAAAGTGATGACAACGAAGATCAATACTCAAATTCGAGCAGTCTTGAGTCGAGAAACTCCCTCACTAATCATCAAGGTA------AGG----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   133399 140 -   161274 AAAATGTTACAGCTCAATGAAGACAACAATAACTTATTTAATCACTCAAGTGAT------------AATTCAAA------TCAGAATGACGAACAACATTCAATCTCAAGCAGTTCCAATTCGCAAGATTCGCTGAAGAATAATCAAGGTA------A------TATTGa
i caeJap4.Scaffold17495 C 0 I 1447

a score=52861.000000
s ce10.chrX               934641 147 + 17718866 AGATTCAACGTAATTTTTTAATGTTTTT---TATTTGT-TAAATTTCT--------------AGGAAGTCAGGATGGTGACGGTGAATCTGGATCAACTTCCTGCTCGGAGGACTCTTTTGAAATGTCTAGTACTTGTAGTGTTCGGGAAGAGTTATACGAAGGT
s cb4.chrX              21329120 140 - 21540570 -------------gttctgaaattgtaTAAAAACTTAC-AGGGTTTGTTTC-----------AGGAAGTCAAGATGGTGATGGAGAATCTGGGTCAACTTCCTGCTCAGAAGACTCATTTGAAATGTCAAGTACTTGTAGTGCTAGAGAGGAACTTTACGAAGGt
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig24   671184 137 -  1162296 -------------CTTTAAAAAGCATCTCACTCATTGC-AAAACTTAT--------------AGGCAGTCAGGATGGTGATGGAGAATCCGGTTCCACTTCCTGCTCAGAGGACTCTTTTGAAATGTCAAGTACTTGTAGTATACGAGAGGATATGTATGAGGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34387 141 -   118955 -------------TTATTAAACTTGAAT---TGATTGT-GGTAATTCTTTCTAAT-------AGGAAGTCAAGATGGCGATGGGGATACTGGATCCACTTCTTGTTCAGATGACTCATTTGAGATGTCTAGCTCTTGTAGTATACGAGAAGAAATGTTCGATGGT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       165610 147 +   783054 -------------TTGATAATGCAGTAT---TGACtacaaatgat--tttcaaataaattgaagGAAGTCAAAATGGAGATGGAGAATCTGGTTCAACATCTTGCTCAGAGGACTCATTCGAAATGTCTAGTACCTGCAGTGCTAGAGAGGAATCTTTCGAAggt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=546.000000
s ce10.chrX               934788 1 + 17718866 A
s caeRem4.Crem_Contig24   671321 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34528 1 -   118955 a
i caeSp111.Scaffold412  C 0 I 20
s caePb3.Scfld02_62       165757 1 +   783054 a
i caePb3.Scfld02_62     C 0 I 3
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260 47 - 21540570 I

a score=91.000000
s ce10.chrX               934789 1 + 17718866 A
s caeRem4.Crem_Contig24   671322 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 33
e caePb3.Scfld02_62       165758 3 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260 47 - 21540570 I
e caeSp111.Scaffold412     34529 20 -   118955 I

a score=0.000000
s ce10.chrX               934790 715 + 17718866  
e caePb3.Scfld02_62       165758   3 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260  47 - 21540570 I
e caeSp111.Scaffold412     34529  20 -   118955 I
e caeRem4.Crem_Contig24   671323  33 -  1162296 I

a score=327.000000
s ce10.chrX               935505 8 + 17718866 AAAACCCA
s caePb3.Scfld02_62       165761 8 +   783054 aaaacaaa
i caePb3.Scfld02_62     I 3 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260 47 - 21540570 I
e caeSp111.Scaffold412     34529 20 -   118955 I
e caeRem4.Crem_Contig24   671323 33 -  1162296 I

a score=273.000000
s ce10.chrX               935513 1 + 17718866 A
s caeRem4.Crem_Contig24   671356 1 -  1162296 a
i caeRem4.Crem_Contig24 I 33 C 0
s caePb3.Scfld02_62       165769 1 +   783054 a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260 47 - 21540570 I
e caeSp111.Scaffold412     34529 20 -   118955 I

a score=543.000000
s ce10.chrX               935514 24 + 17718866 GAATAGAAATG---CTCTTTATAGAGG
s caeRem4.Crem_Contig24   671357 22 -  1162296 aaatgaaaacg--tttttttccag---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34549 27 -   118955 gaataaaaatagttaTTGTTCCAGAGG
i caeSp111.Scaffold412  I 20 C 0
s caePb3.Scfld02_62       165770 18 +   783054 caaaaaaaatg---------caagagG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329260 47 - 21540570 I

a score=-16399.000000
s ce10.chrX               935538 236 + 17718866 AAAAGCGACGG--CTGATTGAGAGGAATGAAGTGACTTCACGGAGATCGGATTTCAGCAAAGAAAGCAGCTACGAGAGCCAGTTTCGGTAA--------------GAATGTGTAGAAAATTTTACTGAGTTGGCGTTTCTTGGATACTAATCTCTAATAAATATAATGTGTGATGTTTTGTTTCTACTTGTGTATCCT-----------------------------------------------------TATCTTTTCA-----AATTGGACTT--AAATTATAGACCACCAGC-ATCTCAAATTCAACAA------
s cb4.chrX              21329307 166 - 21540570 AAGAACGACGA--CGGTTGGAAAATAATGAAGTGGTTTCACGAAGATCggttttcaaagattcagCCAGCtacgaaaaacattttgagtaA--------------GCCTTTGGT-----TTCT--------------------------------------------ATTttacaatttctg---------aaatctt-----------------------------------------------------cattttcttc-----agtGAAACGCCTCAAT---------CAACC-------AGTAAAAGTTA-----
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig24   671379 283 -  1162296 --aaacgagGAGGCTGACGGAAAATAACGAAGTGATTCCACGAAGGTCGGATTTCAGTAAAGCGCCAAGCTACGAAAACCAGTTTGTCTAATTATTTATagatttttctttgtt-----ttttgaacatcAG------CTCGTATGCC--TTTTTGAGTAGCACCACATTTAATAGCTCCTT---------ACACCTGGCCAGAGGTACCAGCGCCCTAGTACTCGTAGATGCCAATTATAATACTGGTGATACCCTATTC-----CGCTGAGCCTCACAACCCTATAAtacaaac-------aatttcaattaaaaaa
i caeRem4.Crem_Contig24 C 0 I 60
s caeSp111.Scaffold412     34576 177 -   118955 AGAGACGAAGG--TTAGGAGACCGCAATGAAGTAAATCCACGGAGATCGGATTTCATTAAAACGCGCAGCTACGATAATCATTTCAAGTGG--------------GTGTTTATGG---ACATT--------------------------------------------ATGTAGTACTTCgag---------------------------------------------------------------------ctttttcttcttctggataGAACATATAAGTTCTAA----CCATCGTGCAAGTATTTCATAA------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       165788 157 +   783054 GGAACATAATA--TCTGCAGAAAAATACGAAGCGCATCCACGGAGGTCGGATTTCAGTGAAGCTGTTATCTACGGGAGTCATTTGAAGTGG--------------Gtttttaga-----------------------------------------------------atctaacgttttttg---------------------------------------------------------------------caatttttcc--------acaatttttcagtggtCT----CAATC------GAATTTCTTCT------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=-1340.000000
s ce10.chrX               935774 21 + 17718866 -CACAGCGAGCTGGATTCGGAT
s cb4.chrX              21329473 16 - 21540570 TGAGAAAGatgcaaat------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     34753 15 -   118955 -TATTACAGTCTGGAC------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       165945 15 +   783054 -GATAACCACCTGAAT------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e caeRem4.Crem_Contig24   671662 60 -  1162296 I

a score=63934.000000
s ce10.chrX               935795 197 + 17718866 TTGCAAAATGATTTTATGCGGAAAATCCGGCAGTCAGTAGCTAACCAAATTGAGCACATAGATACTGGTAAG----AAATAAGTTT--GACGTTCTAAAAAATTGGGATTATTT-----T----------TAGGGCTTCCTCAGTTGGATTTCGTAAAGCTAGAGCAGCAACTGACAACTGCCGCAAAAGAAAGAGAGGACGTGGAGAAAAGGATGAC
s cb4.chrX              21329489 191 - 21540570 ---------------tttcaacaaatccGGCAGACTGTTGCGAACCAAATTGAGCACATTGATACTGGTATGTTTTTTGTGAGTGTGAAATATT-TTGTAT-TGAAAgttatttgttttt----------cagccCTTCCACAATTAGATTTTGCCAAACTTGAGAAACAACTAACAACAGCGGCGAAGGAAAGAGAAGACGTGGAACGGAGGATGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   671722 199 -  1162296 TCAAGAGATGACCAATTACAAAAGATCCGAAGGAACGTGGCAGATCAAATTGAGCACATAGACACAGGTAAG-----CGTGGGTGT--AATCTT-CAAAACAtgctaattattt-tttgc----------taggTCTCCCTCAATTAGATTTTGTGAAGCTGGAAAAACAACTAACAACGGCTGCCAAAGAAAGGGAAGACGTGGAGAAAAGAATGGC
i caeRem4.Crem_Contig24 I 60 C 0
s caeSp111.Scaffold412     34768 200 -   118955 GTGCAGAATGCTCATATTCAACAGATCAGGAGAAGTGTTGCTGATCAAATAGAACATATAGATACAGGTATA-----TCAAAACTT--AGTCGTCTTGAAT-Cacattttgtttgtttta----------cAGGGCTACCTCAACTAGATTTTgtgaaactagaaaaacaaCTGACAACGGCagcaaaagagagagaagacgtagaaaaaaggatgac
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       165960 200 +   783054 TTACAAAATGAACATCTTCAACAAATCCGAAGAACAGTGGCGGATCAAATTCAGCACATTGACACAGGT----------AGAATTC--A------CTGAATACTCAATgtttttacttgaaaaaactattcaggTCTTCCTCAACTAGACTTtgtgaaactcgaaaaacaacTTACAACAGCTGCtaaagagagagaagacatCGAGAAGCGGATAGC
i caePb3.Scfld02_62     C 0 I 52
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=3401.000000
s ce10.chrX               935992 12 + 17718866 GTTTGATAATGT
s cb4.chrX              21329680 12 - 21540570 AATTGATTACGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   671921 12 -  1162296 AATTGATAATGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34968 12 -   118955 AGCAGATAATGT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       166160 52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=611.000000
s ce10.chrX               936004 3 + 17718866 GAG
s cb4.chrX              21329692 3 - 21540570 AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   671933 3 -  1162296 GAG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       166160 52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e caeSp111.Scaffold412     34980 0 -   118955 C

a score=60.000000
s ce10.chrX               936007 2 + 17718866 CA
s cb4.chrX              21329695 2 - 21540570 TA
i cb4.chrX              C 0 I 26
e caePb3.Scfld02_62       166160 52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e caeSp111.Scaffold412     34980 0 -   118955 C
e caeRem4.Crem_Contig24   671936 0 -  1162296 C

a score=0.000000
s ce10.chrX               936009 109 + 17718866 CAAATTGTAAATTAGTTAAATTCTAAACATAATTCCACTGGCATTGCTACAGTAATCCTACAGTACCCTTGAATCTCTTGCACTGGGTCAGTAGTACATCCAATGTTCA
e caePb3.Scfld02_62       166160  52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329697  26 - 21540570 I
e caeSp111.Scaffold412     34980   0 -   118955 C
e caeRem4.Crem_Contig24   671936   0 -  1162296 C

a score=-3891.000000
s ce10.chrX               936118 177 + 17718866 AGAtagggcttccatgaagtcgccgcaacggcgcccgcgccggcttcacggcgtcactcatgccacatgtatccaaacgtatagtgcggcgcggaaccccgaatgtgtcggccgcttccaaataacattttagcgcctcaCGCCCTAGTTAATGAAAATAACTTGTGCATAAAATAA
s caeRem4.Crem_Contig24   671936  27 -  1162296 AGATAA-----------------------------------------------TCACTAAT---------------------------------------------------------------------------------TTCTAGTTAATAA----------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       166160  52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329697  26 - 21540570 I
e caeSp111.Scaffold412     34980   0 -   118955 C

a score=-2139.000000
s ce10.chrX               936295 43 + 17718866 AAACGAAATTTGAAACGGACTATAATTTATAAACAAATCCATT
s caeRem4.Crem_Contig24   671963  1 -  1162296 ------------------------------------------T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     34980 36 -   118955 AAACAAAATTAG-------CTTCATTTATAAAATGGAACCAAT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       166160 52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21329697 26 - 21540570 I

a score=273.000000
s ce10.chrX               936338 5 + 17718866 TTCTA
s cb4.chrX              21329723 5 - 21540570 TTATA
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24   671964 4 -  1162296 -TGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35016 5 -   118955 TTGTT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       166160 52 +   783054 I
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=30234.000000
s ce10.chrX               936343 118 + 17718866 ATTTTAAGATATCCGAGAGAAAAGAATGTAATGATTCATGGAGAAGGTACCCGTCATTTCAACA---CCAAAAGAAGACGAATTCAGTTTTACGACTCCCGCCCAGCAAAAACTTACAGGT
s cb4.chrX              21329728 106 - 21540570 TATTTTAGATTCCCGAGAGA------------GACGCCTGGGTAAAACATACTACCTTAAGTCA---TCATCGAAAACTCAACTCTATTTTGAGACTTCCTCCAAGCAAAAATTTACAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   671968 118 -  1162296 GTTTTTAGGTTGGGGAAAGG---AAAGATTGTgacaactggaaaaaatatcCCGCTTCTTACCAACCTTACAAAAAGAGTAACTCAGTTCTGAGGCTGCCGCCTAGTAAAAACTTACAAgt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35021 114 -   118955 AT----AgatgatagaaaaagaaacagaaagtgACAGATGGAGAAGGTATCCTAGTTTTCAACA---TCACAAAAAGACAAACTCTATTTTGCGGTTGCCGCCAAGCAAGAATCTACAGGT
i caeSp111.Scaffold412  C 0 I 240
s caePb3.Scfld02_62       166212 118 +   783054 ATTTTAAGATGGCTGAACAAGACAAAGAAGACCAAAACTGGAGGAAGTTCACAGCTTTTCAGCC---AtataaaaaaccaaactcaGTTTTGCGATTGCCGCCGAGTAAGAACTTGCAGGT
i caePb3.Scfld02_62     I 52 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=-9978.000000
s ce10.chrX               936461 11 + 17718866 ---------------------------------ACAAATTAACT----------------------
s cb4.chrX              21329834 25 - 21540570 -----------------------ATTGATAATAATTTATTACTT------CATC------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   672086  6 -  1162296 -----------------------aag-------------------------att------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       166330 66 +   783054 AAGATTTAGAAttagctaaaaaaaaagaagaatatgtTTTACTTTGGTTCTATCGTACCGACAACT
i caePb3.Scfld02_62     C 0 I 27
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e caeSp111.Scaffold412     35135 240 -   118955 I

a score=91332.000000
s ce10.chrX               936472 230 + 17718866 TTTAGCATGATCAA-------TCTAATTACATAATTTC-----TAGGTTTGCTTCATGAATGAGCTCAGTGAAACTGACACGGAAAATGGGGAAGACTCTGAAGATTCTGATATGGAGCACATGTACGTTAGGAAAAGTAAATCGGTGCCGAACTTCAAGAATGCTACAAGTCCAGATGTGTTAGACTCGAGGAGTTTGCAAGAGTTACATGAGAAATTGGAAAGGAACTTGACGTTAAATG
s cb4.chrX              21329859 239 - 21540570 TTCAGTTTGTTTTAATGCGTTCATAATCTACaattttctattacaggtttgtTTTATGAATGAGCTTAGTGAGACAGATAC---AAACGGAGAAGAATCTGAAGATTCTGATATGGAGCACACTCACGTTAGAAAAAGCAAATCGGTACCGAACTTAAAAAATGCCGCAAATCCTGATCTTTTGGATCCAAAAACATTGAACGAGTTGGTTGAAAAACTTGACAGAAATCTTAAGCTCAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   672092 233 -  1162296 ttcagctaaaaata--------ttaattaaaaactttctgtt-taGGTCTGCTTCATGAATGAACTCAGTGAAACGGAAACTGAAAACGGGGAAGAATCGGAAGATTCTGACATGGAGCATATGTATGTGAGAAAAAGCAGATCGGTGCCTAATTTTAAAAACCCTGCTAACCCGGATGTGTTGGACcccaaaactttgaaagacttacatgaaaaattggagaagaatTTGGACCTCAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35375 224 -   118955 TTCAGGTAGTTCA---------ataattcaata------atttgagGTTTGTTTCATGAATGAGCTCAGTGAAACTGAAAC---GAATGGAGAAGAGTCGGAGGACTCAGACATGGAGCATTCTTATGTTCGGAAGAGTAAATCAGCGCCTAACTTCAAAAACGCAGCGAATCTGGAAATATTGGACATGAAAGCATTAAAAGATCTGACTGAGAAGCTAGAGAACAAtttagttttgaatg
i caeSp111.Scaffold412  I 240 C 0
s caePb3.Scfld02_62       166423 235 +   783054 tttttgaagttcca---cTAGTATAATCAAAAACATAC-ATTCCAGGTCTGTTTCATGAACGAGCTAAGCGAAACGGACAC---AAATGGTGAAGATTCGGAAGACTCAGATATGGAGCATTCCTATGTGCGAAAAAGCAAATCTGTACCGAATTTCAAGAACGCAACACACCCAGATGTTTTGGatccgaaagttttgaaagaattgataGATAAACTGGAGAAAGACATGACTCTAACTG
i caePb3.Scfld02_62     I 27 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I

a score=2784.000000
s ce10.chrX               936702 8 + 17718866 ATAGTAGG
s caeRem4.Crem_Contig24   672325 8 -  1162296 ATAGTGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35599 8 -   118955 aaagtaag
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       166658 8 +   783054 AGAGTAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21330098 0 - 21540570 C

a score=-3761.000000
s ce10.chrX               936710 49 + 17718866 TG--GAGCGGAAATTAGAAAAAAAAATTCTAAACTTTTCTAAACATTTTCA
s caeSp111.Scaffold412     35607 12 -   118955 tt----------tttttaaaca-----------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       166666 43 +   783054 TTGCAATCAATATCTATAAGAAAAag--------agttcgaaaaattctta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21330098  0 - 21540570 C
e caeRem4.Crem_Contig24   672333  0 -  1162296 C

a score=71.000000
s ce10.chrX               936759 49 + 17718866 AAGGTTTTCAGTAAAATCTAGTACCTACTGAGAAATCGGATAGGTTTCC
s caeSp111.Scaffold412     35619 26 -   118955 -------------aaatcT---------CTAGAAACCG-ATATTTTTCC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       166709  0 +   783054 C
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21330098  0 - 21540570 C
e caeRem4.Crem_Contig24   672333  0 -  1162296 C

a score=0.000000
s ce10.chrX               936808 168 + 17718866 TAAAAATGTAGAATCTATTCGAAATCTTCTGTAGGAACTTTGGGAGGTTTAGTAGATTTCATAGACgaatattccgagaaattttctgaacattctaaaacgtttttgaaaattctagaacatacatacattgaaattacagatttttccagataattttttaaatgt
e caePb3.Scfld02_62       166709   0 +   783054 C
e caeJap4.Scaffold17495   133539 1447 -   161274 I
e cb4.chrX              21330098   0 - 21540570 C
e caeSp111.Scaffold412     35645   0 -   118955 C
e caeRem4.Crem_Contig24   672333   0 -  1162296 C

a score=376.000000
s ce10.chrX               936976 127 + 17718866 ttcaaaaaattttaaatcatttctatcaacttgctaaaattccagaaaaGCTT-TAAAAAAATGTTCAACAATTTTCAATCATTTAGAAAAAGACAACTTTCATTGGAAAATTAGAAAA---CAGTTTTCA
s caeJap4.Scaffold17495   134986 104 -   161274 TTTAGATGATTTCAGATCTCGTCAGTCAATTGATTTA---CCCGGAAAAGTTTCTCAAACTATATaagaaaattgatgaaaatttAGCAA---------------------TTAAAAAAGGTTAGTTT---
i caeJap4.Scaffold17495 I 1447 C 0
e caePb3.Scfld02_62       166709   0 +   783054 C
e cb4.chrX              21330098   0 - 21540570 C
e caeSp111.Scaffold412     35645   0 -   118955 C
e caeRem4.Crem_Contig24   672333   0 -  1162296 C

a score=-111.000000
s ce10.chrX               937103 8 + 17718866 AAAATAAA
s cb4.chrX              21330098 8 - 21540570 AAAGTGAG
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold17495   135090 6 -   161274 -AAGGAA-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       166709 0 +   783054 C
e caeSp111.Scaffold412     35645 0 -   118955 C
e caeRem4.Crem_Contig24   672333 0 -  1162296 C

a score=-3539.000000
s ce10.chrX               937111 39 + 17718866 ------------TTT-------GAATAC---T-------TTTTTCAAAATGAAAAAAATAACAATTTT-
s cb4.chrX              21330107 39 - 21540570 ------------TATCAG---TGAATACGGGT-----TATAtctcaaaatcga---------tattct-
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   672333 36 -  1162296 ------------TTTCAA----AATCACGtgt-------tgtttcaaaatcaa---------tatttt-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495   135096 57 -   161274 GTTGTGAACTTTTTTCGGGCTTAAAAAC---TGCCGATAtgtgaaaaaagcaa---------tattttt
i caeJap4.Scaffold17495 C 0 I 1
e caePb3.Scfld02_62       166709  0 +   783054 C
e caeSp111.Scaffold412     35645  0 -   118955 C

a score=187.000000
s ce10.chrX               937150 1 + 17718866 C
s cb4.chrX              21330146 1 - 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   672369 1 -  1162296 t
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_62       166709 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   135154 1 -   161274 T
i caeJap4.Scaffold17495 I 1 C 0
e caeSp111.Scaffold412     35645 0 -   118955 C

a score=131615.000000
s ce10.chrX               937151 264 + 17718866 AGATGAGCGGTGTAAAATGTTGAAACACGAAGCGCATCGGGTTATGAAAATTGCAGAGGAGAAGGCAAGCACGGCACTGGCAGAGTATCGAAGGTAT---------------CATTTTCTTTTT----TGAGGACGCAA--GAAAAACAAG--AAA--AATAATATA----------------------TTTCAGAGGAAGATCGAAAGCAAGTGAGGTGCCGCGACAAGCAAGGCAGTATTTGAGCAAAACAAAGTTGCCGGATATCCAGATTATCCATCAGCAGATTGAAGAAGCCATCTGTAGTGAGT
s cb4.chrX              21330147 255 - 21540570 AGACGAGCGGTGTAAAATGCTGCGACACGTAGCTCAACGGGTGATGCGAATTGCTGAAGAAAGAGCGAAAACGTCACTGGCAGAATATAGAAGGTGC--GTT----------TAATACAGTGTG-----------------AGAAAACGAG--GAT---AATGCAAG----------------------TTATAGGCGAAGATCTAAAGCAAGTGAAATTCCGCGACAAGCAAGGCAGTATTTGAGCAAAACTAAACTGCCGGATATTCGACTAATCCATCAACAGATCGAAGAAGCCATAAGTCGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   672372 261 -  1162296 agacGAGCAATGCAAAATGCTGCGACACGAGGCACATCGAGTGATGAAGATTGCAGAGGAGGGAGCAAAAATGTCGCTGGCAGAATATAGAAGGTGA----------------AATATgctctc-----------------gaaaaaaaaa--gat---atatcAAACCGC------------CGCCGTTTTCAGAGGAAGATCAAAAGCAAGCGAGGTTCCACGACAAGCAAGGCAATATCTGAGCAAGACTAAACTGACGGATATTCAGTTAATCCTTCAGCAAATGGAAGAAGCCATAAGCAGTGAGT
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold412     35645 271 -   118955 AGCCGAGAGATGCAAAATGCTAAGACACGAAGCGCGTCGAGTGGTGAAAAttgcagaagaaaaagcaaaagtgTCGCTGGCAGAGTATAGAAGGTGA--TTGa--------ttattctcatttc----tggggaaaacg--aaaaaaaaag--cacGTGAGACAAGA----------------------TTTCAGAGGAAGATCGAAAGCGAGTGAAATCCCACGGCAAGCAAGGCAGTATCTGAGCAAGACTAAACTGACGGATATAAAGATTATCCATCGGCAAATTGAAGAAGCCATTAATAGTAAGT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       166710 259 +   783054 AGACGAGCGATGTACAATGCTGAAGCATGAGGCATATCGCGTGCTCAAAATTGCCGAGGAGAAAGCAAAAGTGTCATTGGCAGATTATAGGAGGTaa--ccaa---------aaatataatttt-----------------aaaAACCTAG--TATTGATATTCTCA----------------------TTTCAGAGGAAAATCGAAAGCAAGCGAAGTCCCGAGACAAGCGCGGCAGTAtttgagcaaaacaaaactaCGAGATATCCAGATTATCCATCGGCAGATTGAAGAAGCCATAAATCGTGAGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   135155 311 -   161274 AGATGAGCGTAGTGTATTATTGGTTTTTGAAACTAGCCGAGTAATGAAGGTTGCATCATTCAAAGCAGATATGGCACTTGCAGAGAATCGCAGGTAAAGTTAAAATATATGTGACTCTGTTTTTAGCTCGTGGATCGCGACTAAAAACAAGTTGATTTCATCGTAAATTATTTTGCAAATACGTATACTTTTCAGGATCGTGTCAAATAGTAGTGAAATTCCTCGTCAGGCAAGACAACACTTGTGCAAGACAAAAATACACGATATCCAAGGCATTCGtaataaaatagaaaatgcTATTTCGAGTAAGT
i caeJap4.Scaffold17495 C 0 I 2614

a score=632.000000
s ce10.chrX               937415 10 + 17718866 TT--------------ATCAAAAT
s cb4.chrX              21330402 24 - 21540570 GTCAGCTCTAGTGTGAATGAGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   672633 10 -  1162296 GT--------------ATGAAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     35916 10 -   118955 GT--------------AGGAAAAT
i caeSp111.Scaffold412  C 0 I 127
s caePb3.Scfld02_62       166969 10 +   783054 TT--------------ATGGAAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   135466 2614 -   161274 I

a score=-6000.000000
s ce10.chrX               937425 14 + 17718866 ATGAATGATTTGGA-------
s cb4.chrX              21330426 14 - 21540570 CAGATAAAGAAAGA-------
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig24   672643 14 -  1162296 AAGAGTGAAGCGGA-------
i caeRem4.Crem_Contig24 C 0 I 805
s caeSp111.Scaffold412     36053 14 -   118955 -------atgaacacCTTCAT
i caeSp111.Scaffold412  I 127 C 0
s caePb3.Scfld02_62       166979 10 +   783054 -----------ATAGTGTTGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   135466 2614 -   161274 I

a score=180.000000
s ce10.chrX               937439 1 + 17718866 A
s cb4.chrX              21330484 1 - 21540570 a
i cb4.chrX              I 44 C 0
s caeSp111.Scaffold412     36067 1 -   118955 A
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       166989 1 +   783054 G
i caePb3.Scfld02_62     C 0 I 279
e caeJap4.Scaffold17495   135466 2614 -   161274 I
e caeRem4.Crem_Contig24   672657 805 -  1162296 I

a score=-4538.000000
s ce10.chrX               937440 19 + 17718866 ACAGATTAGCATACAC----ACT-
s cb4.chrX              21330485 18 - 21540570 --atattttatcatgt----AGTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     36068 19 -   118955 ----ACTGATGAAcggaaaaagt-
i caeSp111.Scaffold412  C 0 I 2
s caePb3.Scfld02_62       167269 15 +   783054 ----ATCTTTACTTGG----ATT-
i caePb3.Scfld02_62     I 279 I 2
e caeJap4.Scaffold17495   135466 2614 -   161274 I
e caeRem4.Crem_Contig24   672657 805 -  1162296 I

a score=96044.000000
s ce10.chrX               937459 124 + 17718866 TTTCAGGAAAAAACATGGAGCTTGTTGGTCTTCTTTTGGAACGGGATAATCTACACATGGAGCATGACTCTTTGAGAGTTGATATCGATGACTATACTCAACAAAAATCGCCGG-TA---AGTACAAA
s cb4.chrX              21330503 127 - 21540570 TTTTAGGAAAAAACACTGAGCTAGTGGGACTCCTTTTGGAACGGGACAACCTACACATGGAACATGACTCATTTAGACTTGATATTGACGACTATACTCAACAAAAATCACCGG-TACATATGATATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   673462 124 -  1162296 TTCCAGGAAAAAATAACGAGTTGGTCGGACTTCTTCTCGAACGTGACAACTTACACATGGAACATGACTCATTGCGAGTCGACATTGACGATTACACTCAACAGAGATCTCCGG-TA---ATAACCTC
i caeRem4.Crem_Contig24 I 805 C 0
s caeSp111.Scaffold412     36089 124 -   118955 tttcaggaaaaaacaaCGAGCTGGTCAAGCTACTCCTGGAAAGAGATAATTTACATATGGAGCACGATTCATTGAGAGTGGATATTGATGACTACACTCAGCAAAAATCTCCGG-TA---AAATCTCC
i caeSp111.Scaffold412  I 2 C 0
s caePb3.Scfld02_62       167286 124 +   783054 TTGCAGGGAAAAACAACGAACTCGTTGGCCTTCTACTTGAACGAGATAATCTGCATATGGAATATGACTCTTTGAGAGTTGACATTGACGACTATACTCAACAAAAATCTCCTG-TA---AGAACGGC
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17495   138080 125 -   161274 tttcagaaaaaaatgcggAACTAGTCGGACTATTGTTGGAAAGAGATAACCTTCATATGGAACACGACTCACTTAAAATAGATATTGATGATTTTACTCAACAAAAAATGCCGGTTG---GTGACAAA
i caeJap4.Scaffold17495 I 2614 n 2614

a score=14701.000000
s ce10.chrX               937583 92 + 17718866 TATCCGCG-TGAACTTTAACAGAATTAAT----TTCCAGTTGATACTCCTTGATATGAAACGGCTTCTGCAATTACAGAAAGGGCTCGAAAGCAATT
s cb4.chrX              21330630 90 - 21540570 ACAAT----TAGA---ATACTGTAATTATGTGATTTCAGCTGATCTTCCTTGACATGAAGCAATTGGTGCAGCttcagaaaaaactggaaaacaacT
i cb4.chrX              C 0 I 1534
s caeRem4.Crem_Contig24   673586 93 -  1162296 AATTC----CAGATTCTTACTCAAATTAATTATTTACAGCTAGTCTTCCTAGACATGCGGCGGTTGTTGAATCTCCAACAgggacttgaaaaaaatt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     36213 96 -   118955 CCTTCttgttcacttttctctcatcaAACTTG-TTTCAGCTAATTTTTCTCGACATGAAGAGACTATTTCATTTGCAAAACGGACTAGAGCAAAACA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       167410 91 +   783054 ATTTC----AAACCTTGTACTCAATCAACCT--TTACAGCTCATTTTCCTAGACATGAAGCGACTACTTCACTTGCAAAATGGGCTTGAGCAAACTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=1425.000000
s ce10.chrX               937675 17 + 17718866 CACTTGGCACTAAGAAA
s caeRem4.Crem_Contig24   673679 16 -  1162296 cacttgAATCGAGAAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     36309 17 -   118955 CACTTCaagcaatttga
i caeSp111.Scaffold412  C 0 I 2
s caePb3.Scfld02_62       167501 17 +   783054 cacttcaaacaaaaaga
i caePb3.Scfld02_62     C 0 I 86
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I

a score=-815.000000
s ce10.chrX               937692 17 + 17718866 TTC--------TGTTAGAAATTTTT
s caeRem4.Crem_Contig24   673695 19 -  1162296 -TGggatctaatttcaaa-----tt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     36328 14 -   118955 -----------ttttagagaCTTTT
i caeSp111.Scaffold412  I 2 I 159
e caePb3.Scfld02_62       167518 86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I

a score=550.000000
s ce10.chrX               937709 15 + 17718866 TAACCTCAATAGTTT
s caeRem4.Crem_Contig24   673714 15 -  1162296 tggttACAATAATTT
i caeRem4.Crem_Contig24 C 0 I 64
e caePb3.Scfld02_62       167518 86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36342 159 -   118955 I

a score=0.000000
s ce10.chrX               937724 61 + 17718866 TTTGTATTTATTTGCATTTTTGTTACATTTTTGTTTCAGTGATCTTTCATTCAGTTCGGTA
e caePb3.Scfld02_62       167518 86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36342 159 -   118955 I
e caeRem4.Crem_Contig24   673729 64 -  1162296 I

a score=1732.000000
s ce10.chrX               937785 39 + 17718866 TATTTATTTCTCTACTTATAAACTCAATGAAGCAAGTAC
s caeRem4.Crem_Contig24   673793 39 -  1162296 tatttattttctcatctaTCATTATAATGGAGCAAATAC
i caeRem4.Crem_Contig24 I 64 I 161
e caePb3.Scfld02_62       167518 86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36342 159 -   118955 I

a score=0.000000
s ce10.chrX               937824 304 + 17718866 AAAACTTTCATTTTCTGTAATTTAATAGGGATTTAGTTATAATTTCTGGGCAATACGTGAACCTTTTTTGGCACAAAACATTTCACACCCAGTTATAATATTTATGGATTTGGAAATTCAGGCATTTCAGATTGAGATTTTTTGTTGGTCAGTGCAAATCTAATTATGTTCGGTGCCTGTTCAAATTTTGATCAATGCAATTAATCCTTTAGTCAGTGGGAAATATACCGCAGTCAGTCCAAATCAAATTTTTCGACAACTTAATTCAAACTTTGTGCAATCAAAACCTTTGCCTGTGTTCCTT
e caePb3.Scfld02_62       167518  86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36342 159 -   118955 I
e caeRem4.Crem_Contig24   673832 161 -  1162296 I

a score=61.000000
s ce10.chrX               938128 44 + 17718866 AAAATTATGTCAGTGCAATTAAAATTTTGGTCAGTGCCAAACAA
s caeSp111.Scaffold412     36501 28 -   118955 aaaatt---------cgactAATGTT-------GTGTATAACAG
i caeSp111.Scaffold412  I 159 C 0
e caePb3.Scfld02_62       167518 86 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeRem4.Crem_Contig24   673832 161 -  1162296 I

a score=-2450.000000
s ce10.chrX               938172 128 + 17718866 -TCTTTGGTCAGTGCACTCGATCAGCGAAACGTAAATCAAAAACGTTAATAATTTTTACATTAAAGGATTATT--TAAAATTTCAAAAACTAAAATAATGTTTTAATTCTCAAATCACATTTCATCATAGT
s caeSp111.Scaffold412     36529  78 -   118955 -ATTTGAACCATTGTTCTCCAACAGAGCCAAACATTcagaata----------------------------tt--cgaaatttca------------------tgtttc----atcatttttagtCATTGT
i caeSp111.Scaffold412  C 0 I 34
s caePb3.Scfld02_62       167604 101 +   783054 TTTTTGGCTTGatgaaataacagaaaataagATAATCTGAATA----AATAATAGTAAC----AAAGA-TGTTGGTGAAATCTCA------------------CAAAACT---ATCATATTTCATCATTGT
i caePb3.Scfld02_62     I 86 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeRem4.Crem_Contig24   673832 161 -  1162296 I

a score=-315.000000
s ce10.chrX               938300 56 + 17718866 CACCAAATTTTTTACAACATTCATTTCAAAAGGAAATAAAATAATTGTAATCTTAT
s caePb3.Scfld02_62       167705 39 +   783054 TCCC-------------TATGAGTTCTAACAAAGGATGAC----TTTTAATTTTAT
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36607 34 -   118955 I
e caeRem4.Crem_Contig24   673832 161 -  1162296 I

a score=0.000000
s ce10.chrX               938356 22 + 17718866 TTCTCACTCATAGAAAATGGGA
e caePb3.Scfld02_62       167744 11 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36607 34 -   118955 I
e caeRem4.Crem_Contig24   673832 161 -  1162296 I

a score=68.000000
s ce10.chrX               938378 3 + 17718866 AAC
s caeRem4.Crem_Contig24   673993 3 -  1162296 Aaa
i caeRem4.Crem_Contig24 I 161 C 0
e caePb3.Scfld02_62       167744 11 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I
e caeSp111.Scaffold412     36607 34 -   118955 I

a score=30.000000
s ce10.chrX               938381 2 + 17718866 CG
s caeRem4.Crem_Contig24   673996 2 -  1162296 ct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     36641 2 -   118955 cc
i caeSp111.Scaffold412  I 34 C 0
e caePb3.Scfld02_62       167744 11 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21330720 1534 - 21540570 I

a score=46417.000000
s ce10.chrX               938383 228 + 17718866 ATTCAAAAAATATAAAACGTC----TGTAATTGGTATGTGCAAATGACT-TTG-GTTTATCAACAAAAAAAAAGAAAAGAAAGGCGTTGATAAGATA--TGCAATTCTGATAAGAAGAAC---AGTGGAGG-G----------CTCCGTCTATTTCACAGCATCATTTTCTTTTGTCATTTCAATACCTGA-------------ACCTA--TTTATTCAAAGA--------TCAATTAGCCTCATGA-------------ATCAAAAATGGTAACCTCCAGGTATG
s cb4.chrX              21332254 210 - 21540570 attcaaattttattggaGGTCTTTGTGTTATTGGTATGTGCAAATGGCC-CAG-TTTTATcgcaaaaa---------------aagttgataagATA--TTCG---CTGATAAGAAGAAC---AGTTGGGGAG----------CTCCGTCTATTTCGTTGCATTATTTC--TTGATG------AGAATCAATTGAA--------ACTTATCTTGCATAACGTA--------TTCAT----AACAAGA-------------AACACAGATGGTTacgaaaaagtgag
i cb4.chrX              I 1534 C 0
s caeRem4.Crem_Contig24   673998 219 -  1162296 attcaaattttattggaGGTC----TGTAATTGGTATGTGCAAATAGCC-CTG-GTTTATCaaaaaaa------------GGTAAGATGATAAGATA--TTCT---CTGATAAGGAGAAC---AGTTGGGG-G----------CTCCGTCTATTTCGTTGCATTATTTC--TTTGTT------ATACTCAATTTAACTCTTCATACTAACATttattaacatt--------ttttttc-aaggaaaa-------------ggCACAAATGGTGACGGCTAAGTAAG
i caeRem4.Crem_Contig24 C 0 I 47
s caeSp111.Scaffold412     36643 206 -   118955 attcaaattttatagGAGGTC----TCTAAATGGTATGTGCAAATAGCC-cactttttatcaaaaaaa-----------------aatgataagata--TTAG---CTGATAAGTAGTAC--TGTTTGGAG-A----------CTCCATCTATTTCACTGcattattct-ttttat--------taCTGAA-------------ACTTAACTTTCTTGTTATACACTTCCGCTATTCA-CATCACTA----------------ACA-ATGGTAACATCAAAGTGAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       167755 229 +   783054 attcaaattttattggaGGTC----TCTATTTGGTCTGTGCAAATGGCtatagtttttatcaaaaaaa--------------tgcgATGATAAGATATTTTTG---CTGATAAGGAGAACGGTGGGTGGGG-AAGGGGCACTCCTCTGTCTTTTTCGTTGcaatatttc-ttttgtt------gtACTCAA-------------ACTTTACTT-----GTATA--------CTAATCA-TAACACAATCATATATGCGATAATATA-ATGGTGACTGCCAAGTaag
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-6570.000000
s ce10.chrX               938611 46 + 17718866 CTTTTGTTCATCTTTG-TA--TTTTTAGTTTTTCAAAATTATCACAACT-
s cb4.chrX              21332464 36 - 21540570 -tttt------ttttgcaa--tcatccgtttt----ttttgtaatttgt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     36849 34 -   118955 ---TT------TGATG-AG--TAAAGAGTTTC----Aactattttcgatt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       167984 38 +   783054 ---tt----aattttg-aatttcaaaagtttt----gaagattgttTATT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   674217 47 -  1162296 I

a score=146377.000000
s ce10.chrX               938657 446 + 17718866  
s cb4.chrX              21332500 449 - 21540570  
i cb4.chrX              C 0 I 121
s caeRem4.Crem_Contig24   674264 414 -  1162296  
i caeRem4.Crem_Contig24 I 47 C 0
s caeSp111.Scaffold412     36883 462 -   118955  
i caeSp111.Scaffold412  C 0 I 212
s caePb3.Scfld02_62       168022 465 +   783054  
i caePb3.Scfld02_62     C 0 I 50
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-1872.000000
s ce10.chrX               939103 14 + 17718866 TTAAAC----ATATTGTT
s caeRem4.Crem_Contig24   674678 12 -  1162296 TTATAA----AGGTTT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     37557 14 -   118955 Ccaaag----agattttt
i caeSp111.Scaffold412  I 212 C 0
s caePb3.Scfld02_62       168537 18 +   783054 ACAacactttattttttc
i caePb3.Scfld02_62     I 50 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21332949 121 - 21540570 I

a score=81816.000000
s ce10.chrX               939117 136 + 17718866 CAGCTCGCCAGAATTGTTGATATTTGGACGTTTTGTGTATGGAATAAACATGGGTTTATCAAGTGGTCTTGTGCCGATGTATTTGATGGAGATCACACCGTATAAGTATCGTGGACCAGCTGGAACTTTGCATCAG
s cb4.chrX              21333070 136 - 21540570 CAGTTCGCCGGAAATATTGATATTTGGTCGATTCATTTATGGAATTAACATGGGCTTATCAAGTGGACTCGTTCCAATGTACCTTATGGAAATTACACCGTACAAGTTTCGCGGACCAGCGGGTACCCTTCACCAG
i cb4.chrX              I 121 C 0
s caeRem4.Crem_Contig24   674690 136 -  1162296 CAGCTCACCAGAGATGTTAATTTTCGGTCGATTCATATATGGAATTAACATGGGACTATCAAGTGGGTTAGTACCAATGTACTTGATGGAAATTACACCTTACAAGTATCGCGGTCCAGCAGGAACCCTTCATCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     37571 136 -   118955 cagatcccCAGAAATACTGATCTTTGGTCGTTTTATTTATGGGATAAACATGGGTTTATCTAGTGGACTAGTACCAATGTATTTGATGGAAATCACTCCGTATAGATATCGTGGTCCTGCTGGAACCCTTCATCAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       168555 136 +   783054 caggtccccagaaatgctcatttttggcCGGTTTATTTATGGTATCAACATGGGTTTGTCAAGTGGATTGGTCCCTATGTATCTCATGGAAATCACTCCATATAAATATCGAGGACCAGCAGGAACATTACATCAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=1692.000000
s ce10.chrX               939253 3 + 17718866 GTA
s caeRem4.Crem_Contig24   674826 3 -  1162296 GTA
i caeRem4.Crem_Contig24 C 0 I 30
s caeSp111.Scaffold412     37707 3 -   118955 GTA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       168691 3 +   783054 GTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333206 0 - 21540570 C

a score=-18895.000000
s ce10.chrX               939256 250 + 17718866 T-TT-------TTATTTTTTTGGAACAGAGACGAGCGGCAAATTTTGAATTTTGCCTAATGGGTTTTTTTCTAAATTGT-----GCCAAATTATGTTTT-TTCACTAGAACTTTCAAGAAAAATTAATAGTTTTGGAAG-----------------------------AAATTATT-----------------TTATTCAAAAATGTGCTGAAATTTTTGAAATTAATATGCATATATTTTTTTCA---------TTTTTAATAAT---TTCAATGACCTTC-----------TAAATGTTCACGTTTCAAAATTCCAATTTTTATGTTCTCT
s caeSp111.Scaffold412     37710 107 -   118955 TATT-------TCATTT-------------------------------------------------------AAAGtgt----tgtttgtttttcttatcgTCTC-------------------TTAT---TTTGTGAG-----------------------------ACGTTGTTATGA-------CAGGACTTCTT------------------------------------ATACAGATTCTA-----------------------TGATAAGAACGTT----------------------tctgcaaa---------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       168694 284 +   783054 AATTAGGATTCTCAGTTTGGAGGAGGAAAAACG----------CTTGAATatttaaaaa----------tccaaaatgtgAGGCGTCTGACTAGCTTCT-GTCCC-------------------GTATAG-TTTAGAAGTGACCGCACGTTGCAACCAGTAGCATCATACGTCCTTATGGATTCCATCAaaacttattcaaaa---tg-taaaacttcctaaatt--tttctaaatatcaactccatcaaactttttttgggtaGTACCTGAAACAAACGTCCTTTATTAAGTTGGGggtttagttttcaaaa--ccgaACGATGCATTCTCT
i caePb3.Scfld02_62     C 0 I 61
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333206   0 - 21540570 C
e caeRem4.Crem_Contig24   674829  30 -  1162296 I

a score=1088.000000
s ce10.chrX               939506 70 + 17718866 TCACTCTTTTGGTCTGAAAAATGATTTTTACTG-------CTTGATAAGCGGTACCAGTT--------TCGTTCTTTGCAATCAA
s caeSp111.Scaffold412     37817 70 -   118955 ---------------gaaaaaaagattttgttGGTACCATCGTGATAAGAGATATCAATTATCACATTTCTTTCTTAGCAAACAA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       168978 61 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333206  0 - 21540570 C
e caeRem4.Crem_Contig24   674829 30 -  1162296 I

a score=-3743.000000
s ce10.chrX               939576 53 + 17718866 ---CCAGTACAAAAGTAGAAAATACACTA--TTCACGTGTATTTTCACTT-----------CGATGCAT
s caeSp111.Scaffold412     37887 47 -   118955 TTCTCTGTCTAAATT------ATgtatta--ttcaatttcagactAGCCA---------AACAA-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       169039 59 +   783054 ---CCAGTATAACAT------AGTTGTCAAGTTTAATCCCTccctcatcaatttttttgaacaa-acat
i caePb3.Scfld02_62     I 61 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333206  0 - 21540570 C
e caeRem4.Crem_Contig24   674829 30 -  1162296 I

a score=-2045.000000
s ce10.chrX               939629 16 + 17718866 GTGGAATGGTTTCTAA----------
s cb4.chrX              21333206 19 - 21540570 GTG-------AACTAATGGTGTTTGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     37934  6 -   118955 ----------AACCAA----------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       169098 16 +   783054 TCGTAATGACAACcaa----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   674829 30 -  1162296 I

a score=148638.000000
s ce10.chrX               939645 299 + 17718866 TTA-TTCAAGTT--------------TTCAGATAGCTGTTGCTTTTTCTGACTGGTTCTCATTGCTAATTGGTTTGCCCGAAGTTCTCGGAGACCAAAATAACTGGCCATTAGCATTTGCACTTCCCGGACTTCCAGCTCTTGCTCTGGTCTGCATTTTACCATTTTGTCCGGAATCGCCAAAATACACACTTGGAACGAAGCATGACAGAGACAAAGCATTGAAGGATGTTGAGCTGTTAATTGGAAAGGAGCAAGCACCTCACATGTTTGAGTCAATTGTCAGGGAGGTTGCTTTGGATGAAGTTAGTTTTT--------
s cb4.chrX              21333225 310 - 21540570 ----TGTAATGTGTATATGCAACGCATTCAGGTCGCCGTTGCCTTTTCCGACTGGTTTTCACTTTTGATTGGGTTACCAGAAGTGCTCGGAGACGCCAACAACTGGCCTCTTGCATTTGCACTCCCAGGACTGCCTGCACTTGCACTAGTCTGTATTCTTCCTTTTTGTCCGGAATCTCCTAAATATACACTTGGGACAAAACATGACAGAGAAAAAGCGTTAAGAGATGTAGAAAAACTGATTGGTAAAGATCATGCTCCACACATGTTTGAGTCTATCGTGCGAGAAGTGGCTTTGGATGAAGTGAGTTCAT--------
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   674859 287 -  1162296 tta-tatAATAT--------------CTCAGGTCGCGGTTGCTTTCTCGGACTGGTTTTCGCTGCTAATTGGTTTGCCTGAAGTGCTCGGAGATACCAATAACTGGCCATTAGCCTTTGCTCTTCCTGGTTTACCAGCTCTCGCTCTTGTCTGCATTCTACCATTCTGCCCAGAATCTCCGAAATATACCCTAGGGACGAAAAATGACAGAGAAAAAGCTCTGCGAGATGTAAAATTGTTGATTGGCGAGGAACAAGCACCCCATATGTTCGAATCTATTGTAAGAGAGGTGGCGTTGGATG--------------------
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold412     37940 291 -   118955 TTA--CTAAT----------------TTAAGATCGCTGTCGCGTTTTCTGACTGGTTTTCTCTACTAATTGGTTTGCCGGAAGTGTTGGGAGACGCAAATCATTGGCCGCTAGCTTTTGCTCTCCCCGGCGTACCAGCATTTGCCCTCGTTTGCATATTACCCTTCTGTCCAGAATCACCAAAGTACACACTCGGAACAAAACGAGATAGAGAAAGAGCATTGAAAGATGTAGAGGTGTTGATTGGAAAAGAACAAGCTCCTCACATGTTTGAGTCTATTGTTAGAGAGGTTGCGTTGGATGAGGT--------TCG-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       169114 300 +   783054 ttaattttct----------------ttcagatagCTGTTGCATTTTCTGACTGGTTTTCGCTCTTGATTGGATTGCCTGAAGTGTTAGGAGACGCTAACAATTGGCCGTTGGCGTTTGCTCTTCCTGGATTACCCGCATTAGCACTTGTGTGCATTTTGCCATTCTGCCCAGAATCACCAAAGTATACCTTGGGAACAAAACACGACAGAGAAAAAGCCTTGAAGGATGTGGAATTGTTGATTGGAAAAGAGCAAGCACCACATATGTTTGAATCAATTGTTAGAGAAGTAGCTCTGGACGAGGTAA------TCGTTTTC
i caePb3.Scfld02_62     C 0 I 90
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=0.000000
s ce10.chrX               939944 26 + 17718866 TTTGCGTTTACCTGTATACAAGGATC
e caePb3.Scfld02_62       169414 90 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333535  7 - 21540570 I
e caeSp111.Scaffold412     38231  0 -   118955 C
e caeRem4.Crem_Contig24   675146  0 -  1162296 C

a score=-4747.000000
s ce10.chrX               939970 35 + 17718866 TCTCTATTAGGCTTGTATCTCAAC-----TTTGGTAGCTG
s caeRem4.Crem_Contig24   675146  9 -  1162296 -------------------------------CGGTAGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38231  9 -   118955 -----------------------------TTTAGTAGC--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       169504 40 +   783054 tttcgatttgaaatttgtttctcaaagtttcaaaaagccg
i caePb3.Scfld02_62     I 90 I 139
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333535  7 - 21540570 I

a score=-4078.000000
s ce10.chrX               940005 68 + 17718866 ATGGTAGAATATATTTACGAAAAAATGCATGGTACTAATTTTTAGCAAATCATTTGGCCACTACCAAA
s caeRem4.Crem_Contig24   675155  2 -  1162296 ------------------------------------------------AT------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38240 24 -   118955 -------AATGTACTGgcgaaaaa-------------------agtaaat------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       169544 139 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333535  7 - 21540570 I

a score=226.000000
s ce10.chrX               940073 6 + 17718866 TTTTGG
s caeRem4.Crem_Contig24   675157 6 -  1162296 TTGCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       169683 6 +   783054 TCTTTG
i caePb3.Scfld02_62     I 139 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333535 7 - 21540570 I
e caeSp111.Scaffold412     38264 0 -   118955 C

a score=-22839.000000
s ce10.chrX               940079  53 + 17718866 AAG------------------------------------AAAAATGTTATACACACAGCTCTGAAATTGAAACTTTTGAGTTCAAAACT----------------------------
s cb4.chrX              21333542  19 - 21540570 -----------------------------------------------------------------AGTAA-----CAGTGTCATCCTTT----------------------------
i cb4.chrX              I 7 I 7
s caeRem4.Crem_Contig24   675163  21 -  1162296 ----------------------------------------------------------------AAGAAA----TCGGTGATCTGAACA----------------------------
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold412     38264   4 -   118955 ---------------------------------------------------------------------------ttgA--------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       169689 104 +   783054 AAGCTCTTTGAAGGAGCATTATACTCTCCAGAGGTACTAAAAATTGT---------AGTTCCGAAAGGAA----TTTGAGCTCTCCctccttcatattttttttgggtgtcAAAATT
i caePb3.Scfld02_62     C 0 I 46
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=0.000000
s ce10.chrX               940132 30 + 17718866 GAGAGGGAATGCCAAACTACATGGCTATTT
e caePb3.Scfld02_62       169793 46 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333561  7 - 21540570 I
e caeSp111.Scaffold412     38268  0 -   118955 C
e caeRem4.Crem_Contig24   675184  7 -  1162296 I

a score=165044.000000
s ce10.chrX               940162 386 + 17718866 TCAGGGAGATGGAACCTTCCGGGAGCTCTTCACTAGACCAGATCTCAGAATTCCCCTTGCCGTCTCTATAATCGTCATGATAGCTCAACAATTCACCGGATGTACAGCAGTATTTGCATTCTCCACTGACATGTTCCTTAATGCAGGGCTCACTCCGTGAGT----------------TTTTCCCGCACAAAAGTGAAAAATTTCAA---------------------------G--------------TATGTA---------------------TTTCAGAGTGATCGCAAGATTTAGTACACTTGCAATCGGCATTGTATACTTTTTGTTCGCATGTACAAGTCCGTTCCTAATTCACAAAGTTGGAAGACGGTGGCTATCATTGTTCCAGTTAGCCAGTTGTATGGTGGCTTTGATGTTGCTCTCTTTATTCACATTTTTGCAGAATTACGAAAATGTGA
s cb4.chrX              21333568 388 - 21540570 AAAGGGAGATGGGACTTTCAAAGAATTGTTCACACGCCGCGATCTTCGAGTACCACTTGCTGTATCTATCATAGTCATGATTGCTCAACAATTCACTGGATGTACTGCTGTTTTTGCATATTCCACAGACATGTTTTTAAATGCTGGTCTGAGCCCGTTAGT-----TTCCTC-----ATTCTTTAATC----------GACTTCAT------------------------TTAA--------------TGTTGT-----------------G-ACTTTTAGATTGCTGGCCAGATTCAGTACCTTGGCCATAGGAATCGTTTATTTTTTATTCGCATGCACATCGCCATTCCTTATTCACAAAGTTGGTAGAAGATCGCTGTCTCTTTTCCAATTGGCTAGCTGTATGGTTGCTCTGATGATGCTTTCTTTATTCACATTCCTTCAAACTTATGAAAATGTAA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   675191 391 -  1162296 TTAGGGTGATGGTAGTTTCCGTGAATTATTCACAAGACCCGACCTACGTATCCCACTTGCGGTGTCTATAATTGTCATGATTGCTCAACAGTTCACTGGATGTACAGCAGTTTTTGCATTCTCCACTGACATGTTCCTCAATGCTGGCCTCAGTCCGTAAGTattactttcag-----tttttttttac----------atattCAC---------------------------a--------------cgtttc-----------------acattttcagagttcttGCAAGATTCAGTACATTGGCCATCGGTATCGTCTACTTCTTATTTGCATGTACTTCACCATTCTTGATTAACAAAGTTGGAAGAAGATCGTTATCTCTTTTCCAACTTGGAAGTTGCATGGTGGCACTGATGATGTTATCACTTTTTACATTCCTCCAGACTTATGAGCAGGTGA
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold412     38268 385 -   118955 --AGGGAGATGGAACGTTCAAAGAACTTTTCACAAGGCCAGATCTCCGAATCCCTCTTGTCGTTTCCATTCTCGTAATGATTGCACAACAATTCACAGGATGTACAGcagtttttgctttttcaacAGACATGTTTTTGAACGCTGGGTTGAGCCCGTGAAC-----ACTCAA-----TTTTATCTTTC---------AAATCACCt------------------------caaa--------------cgtttt--------------------tttccagagtTCTCGCAAGATTCAGTACCCTGGCAATTGGAATTGTTTATTTCTTGTTTGCCTGCACATCCCCATTTCTTATTCATAAAGTTGGCCGCagatctctttctcttttccaactTGCCAGTTGCATGCTAGCTTTAACAATGCTGTCTTTATTTACGTTTTTACAAACATATGAACAGGTAA
i caeSp111.Scaffold412  C 0 I 24
s caePb3.Scfld02_62       169839 455 +   783054 TCAGGGAGATGGAACATTCAAAGAATTGTTCACAAGGCCGGATCTTCGTATTCCATTGGCAGTATCTATCATCGTAATGATCGCACAACAATTCACTGGATGTACTGCTGTTTTCGCTTTCTCTACGGATATGTTCCTCAATGCTGGTTTGAGCCCGTAAGA-----tttcaatccttttttgttttgcttga--aaaaaacttcctattATTGAGGAATGGGAACTGAGGCAAAATACTACTTGCccttattttcacaaaataacaaagcaa-attttcagtgttcttGCAAGGTTCAGTACCCTTGCTATTGGAATAGTTTATTTCTTGTTTGCTTGTACTTCACCATTTCTCATCCACAAAGTTGGCCGAAGATCTCTTTCCCTTTTCCAACTCGCAAGCTGTATGGTAGCATTAATGATGCTCTCTTTGTTCACATTTTTACAAACCTATGAACAggta-
i caePb3.Scfld02_62     I 46 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=207.000000
s ce10.chrX               940548 1 + 17718866 G
s cb4.chrX              21333956 1 - 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675582 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 I 37
s caePb3.Scfld02_62       170294 1 +   783054 a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38653 24 -   118955 I

a score=1665.000000
s ce10.chrX               940549 6 + 17718866 TTTTGA
s cb4.chrX              21333957 6 - 21540570 TTTTGA
i cb4.chrX              C 0 I 29
s caePb3.Scfld02_62       170295 6 +   783054 ttttga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38653 24 -   118955 I
e caeRem4.Crem_Contig24   675583 37 -  1162296 I

a score=182.000000
s ce10.chrX               940555 2 + 17718866 AT
s caePb3.Scfld02_62       170301 2 +   783054 at
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333963 29 - 21540570 I
e caeSp111.Scaffold412     38653 24 -   118955 I
e caeRem4.Crem_Contig24   675583 37 -  1162296 I

a score=0.000000
s ce10.chrX               940557 895 + 17718866  
e caePb3.Scfld02_62       170303   2 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333963  29 - 21540570 I
e caeSp111.Scaffold412     38653  24 -   118955 I
e caeRem4.Crem_Contig24   675583  37 -  1162296 I

a score=373.000000
s ce10.chrX               941452 4 + 17718866 AACA
s caePb3.Scfld02_62       170305 4 +   783054 aacA
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333963 29 - 21540570 I
e caeSp111.Scaffold412     38653 24 -   118955 I
e caeRem4.Crem_Contig24   675583 37 -  1162296 I

a score=-644.000000
s ce10.chrX               941456  9 + 17718866 ------ATAAA-----AAAA
s caeSp111.Scaffold412     38677  9 -   118955 ------ATAAA-----TTGC
i caeSp111.Scaffold412  I 24 C 0
s caePb3.Scfld02_62       170309 20 +   783054 ACAAACATAAATattgttat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21333963 29 - 21540570 I
e caeRem4.Crem_Contig24   675583 37 -  1162296 I

a score=488.000000
s ce10.chrX               941465 3 + 17718866 TGC
s cb4.chrX              21333992 3 - 21540570 TAC
i cb4.chrX              I 29 C 0
s caeSp111.Scaffold412     38686 3 -   118955 TGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170329 3 +   783054 tga
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   675583 37 -  1162296 I

a score=72435.000000
s ce10.chrX               941468 115 + 17718866 AGATCGAATGGGCTAGATACGGAACAATATTTTCTCTGGTGTTCTACATGTGTGTCTATGGTGTTGGTTCTCCAATCCCATGGATCATTGCAAGTGAACTTTTTACACAGCAGGT
s cb4.chrX              21333995 115 - 21540570 AGATTGAATGGGCACGGTACGGAACCATTTTCTCATTGGTATTTTACATGTGTGTGTATGGTGTAGGATCGCCAATTCCATGGATTATCGCCAGTGAATTGTTCACACAACAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675620 110 -  1162296 AGGTCGAGTGGGCACGATATGGAACAATTTTCTCTCTTGTCTTCTATATGTGCGTCTATGGTGTTGGATCCCCAATTCCATGGATTATCGCTAGTGAGCTTTTCACACAA-----
i caeRem4.Crem_Contig24 I 37 C 0
s caeSp111.Scaffold412     38689 115 -   118955 AGGTTGAGTGGGCGCGATATGGaacaattttctcattaGTGTTCTATATGTGTGTCTATGGAGTCGGATCTCCTATTCCATGGATTATTGCAAGTGAACTGTTTACTCAACAGGT
i caeSp111.Scaffold412  C 0 I 31
s caePb3.Scfld02_62       170337 115 +   783054 aggtCGAATGGGCACGATATGGCACAATTTTCTCTTTAGTTTTTTATATGTGCGTATACGGAGTAGGATCGCCAATTCCATGGATTATCGCAAGTGAACTATTCACACAGCAAGT
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-3424.000000
s ce10.chrX               941583 31 + 17718866 TGGTTGATCTTTTCTCAATTTTATCATACAG---
s cb4.chrX              21334110 23 - 21540570 --ACAAA---------ACTATGACTGAAAAATGC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       170452 29 +   783054 AAGCATACCGTTT-TGATTAATActagaaa----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38804 31 -   118955 I
e caeRem4.Crem_Contig24   675730  0 -  1162296 C

a score=58663.000000
s ce10.chrX               941614 106 + 17718866 ATTTTGAATTTCCAGTTCCGGGCAACCGCTGTGACAGTGTCGGTATTTGTTGCGTGGACATTTGCGTTTATCGTTAGCACATCTTATCTACCATTCCAGCAGGTAA
s cb4.chrX              21334133 106 - 21540570 ACTGTTCTTTTCCAGTTCCGTGCAACTGCTGTGACAGTATCTGTTTTCGTTGCTTGGACGTTTGCTTTCCTGGTTAGCACTTCTTATCTTCCATTCCAACAGGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675730  94 -  1162296 ------------CAGTTCAGAGCCACTGCAGTGACCGTCTCTGTATTTGTCGCGTGGACATTTGCATTCATTGTTAGCACTTCTTATCTCCCATTCCAGCAGGTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38835 103 -   118955 ---TTTTTATTACAGTTCAGGGCAACCGCCGTAACCGTATCGGTTTTTGTAGCTTGGACATTTGCATTCATTGTTAGCACATCATATTTACCATTCCAGCAGGTAA
i caeSp111.Scaffold412  I 31 I 32
s caePb3.Scfld02_62       170481 103 +   783054 ---attgtgtttcagTTCCGTGCCACAGCTGTAACAGTTTCCGTCTTTGTTGCCTGGACATTTGCATTTATTGTGAGCACTTCATATCTCCCATTCCAACAGGTAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-2603.000000
s ce10.chrX               941720 6 + 17718866 GTG---GTT
s cb4.chrX              21334239 1 - 21540570 --G------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675824 1 -  1162296 --G------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       170584 6 +   783054 GAGATT---
i caePb3.Scfld02_62     C 0 I 40
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38938 32 -   118955 I

a score=-12207.000000
s ce10.chrX               941726 248 + 17718866 CAAATTTTTCAAACAAACAAAAATTAATTTGCAAAAAACTGAGGCGCCTGAAATAACTATAAATAGGCGCAGATTGAACTAAAAGTCGGGGAACTAAAAGTCT--TCCCGTGTTTTGATATTTTTTTTCTGTGTATTGGCCAAAAAATTCGTGTGTCCCTTTAACCGGGAAAATTTTACCAAAAAGAAAAACGACGCAAGTTAAAAGTTCCGCTAACCATTCGCTGACTGAAAAACTAGAAAGTTTTTGA
s cb4.chrX              21334240 139 - 21540570 ------------------AAAAACttgttc----------------------atatttttctgTGCGAGCA---TGACAT-------------CAAAAACTATAATCC------GTGCTGCGTTGATTTGATGGAATGACC--------------------------AGATAA-------AGAAGGGG----CGCCTAGTTGTGCAATTAAAGAAAAgttagatt-----------caaaaatttttta-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675825 140 -  1162296 -------TTC---CCAGCGAAAA-----------------------------AGGATTATCTG-----------TCACTT-------------CTAAAGATGT--TCA------TTGTCGACTGTTTGCAGAGTAGTAAACAACAA---------------------AGATaa-------caaatgagaaaacacTCATGTTTGTTGTCTCgcagattttttgtt-----------tgcaaAGTGTTCAA
i caeRem4.Crem_Contig24 C 0 I 21
e caePb3.Scfld02_62       170590  40 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38938  32 -   118955 I

a score=40.000000
s ce10.chrX               941974 127 + 17718866 ATTTTACTTTTTGTTTTTCAAAAAATG--AAACTTGAAATTATAGCTATTGTGATAATTTCAAATTATTCAAACAAGAAAAAAATTTGTCGGCATCCCTGGTCGCAATACATTCGGGCCAAATATACAT
s cb4.chrX              21334379 109 - 21540570 aaactttaatctgatggaaaaaaaatggaaaaactggaatggaaact-ttatgaaaa------------aaaacaggataGGAGTTTTTGCGGATACT-------AACTCAtaagaacaaaaaacacat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       170590  40 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     38938  32 -   118955 I
e caeRem4.Crem_Contig24   675965  21 -  1162296 I

a score=0.000000
s ce10.chrX               942101 120 + 17718866 AAACAAGTAGGCATCTTTTGTAACCCTATTGACAGAAGCACACAACTTTAATTAATCTTTCAAAACGTTTTTTTCACAGTAGTCTTACCGGGCATTTTCGATTTGCTAAAATAATTTTAT
e caePb3.Scfld02_62       170590  40 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334488   0 - 21540570 C
e caeSp111.Scaffold412     38938  32 -   118955 I
e caeRem4.Crem_Contig24   675965  21 -  1162296 I

a score=37.000000
s ce10.chrX               942221 4 + 17718866 ATGG
s caeRem4.Crem_Contig24   675986 4 -  1162296 ATAT
i caeRem4.Crem_Contig24 I 21 C 0
e caePb3.Scfld02_62       170590 40 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334488 0 - 21540570 C
e caeSp111.Scaffold412     38938 32 -   118955 I

a score=302.000000
s ce10.chrX               942225 2 + 17718866 TT
s caeRem4.Crem_Contig24   675990 2 -  1162296 CT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38970 2 -   118955 tt
i caeSp111.Scaffold412  I 32 C 0
e caePb3.Scfld02_62       170590 40 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334488 0 - 21540570 C

a score=858.000000
s ce10.chrX               942227 4 + 17718866 TTTT
s caeRem4.Crem_Contig24   675992 4 -  1162296 TGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     38972 4 -   118955 catt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170630 4 +   783054 tttt
i caePb3.Scfld02_62     I 40 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334488 0 - 21540570 C

a score=54831.000000
s ce10.chrX               942231 88 + 17718866 TTCAGCTTGTTGGAATCACATTCAGTTATTTCCCCTTCATCATCGGGCTTGCCGTTTTCGGTATCTTCATTTATGTCCTACTTCCGGG
s cb4.chrX              21334488 88 - 21540570 ttcagCTTGTCGGAGTCACTCTCAGCTACTTCCCGTTCATCATAGGACTTGcagtttttggaatcttcaTCTACGTTCTTTTACCAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   675996 88 -  1162296 TTCAGCTTGTTGGAGTGACGCTCAGTTATTTCCCTTTTATCATCGGTCTtgcagtttttggaattttcatcTATGTGCTACTTCCAGG
i caeRem4.Crem_Contig24 C 0 I 174
s caeSp111.Scaffold412     38976 88 -   118955 tttagctAGTTGGAATTACGCTGAGCTACTTTCCTTTCATAATCGGTCTTGCGGTGTTTGGAATCTTTATATACATCTTACTGCCAGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170634 88 +   783054 ttcagcttgtCGGTGTCACTCTTAGCTACTTCCCATTCATCATCGGCCTTGCAGTTTTTGGAATCTTCATTTACGTGCTTCTTCCAGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=90441.000000
s ce10.chrX               942319 207 + 17718866 ----------TAATCGCTCAATTTTTTAATGTATCATCTATT--------------AAATACTTTCAGAAACTCGTGATCGACCAATGGTTGAAATTGTGACAGAAGTTCATCACCGAACAGCTTCCTTGTCAGCTGGAAGACCATGGGATGCTAGTCGGCCACCAAGTCGTCAAGAGGTTCAACGTCTGTTGGATACAATGGATCCACGGAGTTATAGCTCTTATGATAA
s cb4.chrX              21334576 213 - 21540570 TTTAA----CTCAC---------TTTGTATGAAGATGATAACTGATATGAC-----TATTTGTTGCAGAAACTCGAGATCGACCAATGGTAGAAATCGTAACCGAGGTTCATCACCGAACTGCTTCACTATCTGCTGGACGTCCGTGGGACGCAAGTCGTCCACCGAGTCGACAAGAAGTACAACGCCTTTTAGATACTATGGATCCTCGAAGTTATAGCTCTTATGACAA
i cb4.chrX              C 0 I 284
s caeRem4.Crem_Contig24   676258 186 -  1162296 ----------TAAT---------CCTAAgcgagaat--------------------------tttcagaaaccagaGACCGACCTATGGTGGAAATCGTGACAGAAGTTCATCACAGAACTGCGTCATTGTCAGCTGGACGACCATGGGATGCTAGTCGTCCGCCAAGTCGGCAGGAAGTACAACGTCTCCTGGATACCATGGATCCGAGGAGTTACAGCTCGTATGACAA
i caeRem4.Crem_Contig24 I 174 C 0
s caeSp111.Scaffold412     39064 205 -   118955 -TTTGCTTTCTAAC---------TCTTAATAAAAAAGCTC----------------AGCTATGTTTAGAAACTCGAGATCGTCCGATGGTGGAAATTATTACGGAAGTTCATCACCGAACTGCGTCAATTTCCGCTGGAAGACCTTGGGATGCTAGTCGTCCGCCAAGTCGACAAGAAGTTCAACGGCTGTTGGATTCGATGGACCCAAGGAGCTATAGCTCGTATGACAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170722 211 +   783054 -TAAA-----TAAC--------------ATGAACAAATTCATTATTTGCACTAGGAAGGTAATTTCAGAAACCCGAGACCGTCCAATGTTCGAAATTGTAACTGAAGCGCATCACAGAACAGCTTCTTTATCAGCTGGAAGGCCCTGGGATGCAAGCCGTCCACCTAGTCGACAAGAGGTGCAACGCCTTCTGGATACGATGGACCCGCGGAGTTATAGTTTTTACGATAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-3264.000000
s ce10.chrX               942526 24 + 17718866 TTCCACTTTGGAGGATTAATGTGT----
s caeRem4.Crem_Contig24   676444 27 -  1162296 TCCAAGCACCGCAGACGAATAAGATAT-
i caeRem4.Crem_Contig24 C 0 I 92
s caeSp111.Scaffold412     39269 27 -   118955 TTCTGTTAGTGCAGAgtaa-atgttttc
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170933 24 +   783054 CTCAATCAATGAtgatta----gttttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789 284 - 21540570 I

a score=-955.000000
s ce10.chrX               942550 2 + 17718866 CA-----
s caeSp111.Scaffold412     39296 7 -   118955 aatatta
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       170957 2 +   783054 ca-----
i caePb3.Scfld02_62     C 0 I 190
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789 284 - 21540570 I
e caeRem4.Crem_Contig24   676471 92 -  1162296 I

a score=619.000000
s ce10.chrX               942552 15 + 17718866 TTTTGTTTTTATTTT
s caeSp111.Scaffold412     39303 15 -   118955 atGTGTTTTAATTCT
i caeSp111.Scaffold412  C 0 I 48
e caePb3.Scfld02_62       170959 190 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789 284 - 21540570 I
e caeRem4.Crem_Contig24   676471 92 -  1162296 I

a score=0.000000
s ce10.chrX               942567 2331 + 17718866  
e caePb3.Scfld02_62       170959  190 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789  284 - 21540570 I
e caeSp111.Scaffold412     39318   48 -   118955 I
e caeRem4.Crem_Contig24   676471   92 -  1162296 I

a score=1875.000000
s ce10.chrX               944898 297 + 17718866 TAAAGCTAGAAATTCATCGAGATCAA-----AAACAT------GTGCAGGAGGAAAAATTATGAG--TTTCAAAGGGGGAGAAATCGAAAGAAATGAGCAGGAGGGGCATTTTTGCGGGAAAGAAAATGTGTTGTTCGTTGTGTTTAATTGAAATATCTCGTA-TGGAGCATCGTA--TTGTACTGGAAAAGAAGTAGGAAAAACCGCTTTGGGGGAAATACAAAACAAAACAT------TAACAAC----AAAAAAATGAGATAAGCAAAATGTCGAAACTGAGGGGAAGGGATTAAATTTTGATTTGaaattaaaccaaaa
s caeRem4.Crem_Contig24   676563 206 -  1162296 taaagcCAATAATTCATTGAGATCAACTAG-AAAGGTAACATTTTGAGAAGGGGGGAATTCTGAG------AAAGAA--------TGCAGG----GGG-AAGTGgagcaaattttaaaaacataa--------gTTCGTTGTTTGATATCG--TTATCACGTA-TTGATTATCGTTGTTTGTAC----TACAAAGTAGAAGCAGCc------ggaacaaaacaaaacaat----------taacaac--------aaaaaagtta----------------------------------------------------------
i caeRem4.Crem_Contig24 I 92 C 0
s caeSp111.Scaffold412     39366 252 -   118955 taaagCCAAGAATTCATTGAGATCGGCTAACAAAAat---------ggaaggaaaaaattgtGGGATTTGCAAAGAGGT----TTTGAAGG----GGGCACGTGGAGcaaatgatggaa----aa--------attCGTTGTTTTTAAATC--TTATCTCGTATTTGATTATCCTCGTTTGTAC--GTTTTGAAGTAGTGATAGTC------GGAGTAAGAGGACACAACAGAGAACTTATAACAACAGTAAACAAAAATGGTTAAgcgaga----aaaactgaa-----------aaactttaAC-----------------
i caeSp111.Scaffold412  I 48 C 0
e caePb3.Scfld02_62       170959 190 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789 284 - 21540570 I

a score=69.000000
s ce10.chrX               945195 2 + 17718866 ct
s caePb3.Scfld02_62       171149 2 +   783054 CC
i caePb3.Scfld02_62     I 190 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21334789 284 - 21540570 I
e caeSp111.Scaffold412     39618 0 -   118955 C
e caeRem4.Crem_Contig24   676769 0 -  1162296 C

a score=74481.000000
s ce10.chrX               945197 211 + 17718866 gggataaaataaa-----------atgatacaaaataaaaaaaagagcattaaattaaattaaaaGTAATACA-------------------TCAAATTATTGCAATTTGTAGTTGATACGATTCATAATGGTGTGCATTCTTTGAGGGCCTTCCAGCGGCCAATTCCACTTGTTCACCAATTTCCCGTCCGCAACATCCGATTCAAACCAGTAGCACAACCAGAACCACCTGaaaaaaaa
s cb4.chrX              21335073 228 - 21540570 gggttgaaAGTAAAAGACATGAACttaacaaaaaaacaacaatg------cAAATTAAAATAATAGTAAGATG--ATAAACTGTGAAACTTGAGATACTATTGGAGTTTGAGATTAATGCGATTCATGATGGAATGCATCTTTTGTGGACTCTCCAACGGCCAGCTCCACTTGTTAATCAGTTTTCCGTCAGAAACATCAGATTCAAACCAGTAGCACAACCAGAACCACCTGAAA-----
i cb4.chrX              I 284 C 0
s caeRem4.Crem_Contig24   676769 177 -  1162296 ------aaagcga-----------ttacaaaaaaagaaacga------------------------------------------gaaaaatgagattctaTTGCAACTTGAGATTAATCCGATTCATGATAGCGTGCATTTTCTGTGGTCCTTCCAGAGGCCAATTCCATTTGTTTATCAATTTCCCGTCAGCAACATCCGCCTCAAACCAGTAGCACAACCAGAACCAcctgaaa-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     39618 189 -   118955 ---GTAAGCACGA-----------GGGATAGGAGA---------------TGAA--AAGATGAATGGAAGATG--------------------TGT-CTATTGCAATTTGTGATTAATGCGATTCATGATTGTATGCATTTTCTGTGGACCTTCCAGCGGCCAGTTCCATTTATTGATCAATTTCCCATTATCAACATCCGATTCGAACCAGTAACATAGCCAGAACcacctgaaacaaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171151 225 +   783054 ---ggcaaaaaga-----------gaaacaaaaaaaaaccaaag--acaTTGAAATAAGTTAAATTGAAAACgatattttctgagaaaaaagctgtattactgtagtttgtggTTGATCCGATTCATAATTTGATGCATTTTCTGGGGACCTTCCAGGGGCCAATTCCACTTGTTCACCAATTTCCCGTCGGCCACATCCGATTCGAACCAATAGCAAAGCCAGAACCACCTGAAACAAAA
i caePb3.Scfld02_62     C 0 I 60
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-9944.000000
s ce10.chrX               945408 92 + 17718866 tttt---ttgaatttttgataataatttttCGCGAAAGTTGATATTTGAAGACAATTCTATTTTGGGCACAAGTTTGTTCGCAATAAGAAAATTT
s cb4.chrX              21335301 56 - 21540570 --ttagatttatttttcaatgacaAT--------------GAATAATGAATATCATTTCA-----------------------AAACTAATATAT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24   676946 49 -  1162296 --tt---ctcaatttctgattcTAAT---------------ACTTCCCCACATAAttct--------------------------attaaaattt
i caeRem4.Crem_Contig24 C 0 I 23
s caeSp111.Scaffold412     39807 31 -   118955 ------------ttttgaaaaatatt-----------------tgaggtactttgttttt-----------------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       171376 60 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-14459.000000
s ce10.chrX               945500 291 + 17718866 TCTCAATGTGCTTTACCCATTTACCAGTTTCTTTGCGTGAATATCATTAACTTGGCCAGTGCAGTTTACCACCAATTCGGTCAGTGCATCTTACCAATTTGGTCAGTGCATCTTACCAATTTGGTCAGTGCATCTTACCAATTCGGTCAGTGCATCTTACCAATTTGGTCAGTTTACATAGCTTATTATGTACAAATACTTCCAATTACCTTCTTTCAGTAATTTTCTACAACTTTTTCTCCCTAATTATCAACTGTTTTC---AATTCATTTCCTCA--CAATCAGAAGCTCTTA
s cb4.chrX              21335362 118 - 21540570 -----------------------------------cttaaatttcaaaagctcAACAA---------ACCATCATTCT----------------------------------------------------------------------------------------------TTTACgtaatctc------------------aatt------tttcattccctt---------ttttcctcCTATCTATCtatagttttctgaaattgaataattcaatttaaaaaaa-------
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold412     39838 106 -   118955 ----------------------------------------atttagtgtgtt-----------------attcatttt----------------------------------------------------------------------------------------------ttgccctcatttctgttg-------------aatt------ttttgactattt-----aaagtttttgtaat-----ttgATATTCTTCCGTAACTGA----------TTACAAAAAGCACATA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       171376  60 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   676995  23 -  1162296 I

a score=108891.000000
s ce10.chrX               945791 246 + 17718866 ACTAACCAAAGTCGACTCAACGGCGCCTGTGGTCGATCGTCCTTTCGCATTTCGAAAATTTGGTGATAAGACCAGAAAACGTGACTTGTCAACCAGTACGCAATTAACACGTCCATCGTATAGTGACCGCCTGACACGACGAGAGCTGCGATTCCGAGGAATGTGATCGGAGCGGCAATGTATCTAAAATACAAAAATGA--------------AAAAAATGAA----------------------------TAATGTT---TCTCA---------------------AAAAAG-TTTTTCATTCAAAAAGAA------------------------------------
s cb4.chrX              21335480 281 - 21540570 acacaccAAAGTCTACTCAGTGGCGCCTGAGGTCTGTCCtcctttttcatttcgaaaatttggtgATAAGACCAGAAAACGTGACTCGTCAACCAGTATGCAATCAGCACATCCATTGTATAGTGGCCGCCTGACACGACAAGCGCTCCAATGCCAAGAAAAGTGATAGGCGCGGCGATGTATCTG-------caaatga--------------aaaagtttgact--------------------------TGGTTTTTAGTCTGA---------------------TGGAAACTCCTGCATTCTGGTACAACATTATTCGAGTCGGCGACGGTTCTTGCAATGGAAA
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig24   677018 228 -  1162296 acgAACCAAAGTCTACTCAGCGGCGCCTGGGGTCTGtcctcctttttcatttcaaaaatttgatgataAGACCAGAAAACGTGACTTGTCAACCAGTATGCAATCAGCACGTCCATTGTGTAGTGGCCGCCTGACACGACAAGAGCTGCGATTCCGAGGAAAGTGATAGGTGCGGCGatgtatctg----------------------------aaaaatttaat-------------------------------------tatga---------------------AGAAAG----------TTGGTTGAAT---------GTCGG----------------GAAAC
i caeRem4.Crem_Contig24 I 23 I 377
s caeSp111.Scaffold412     39944 216 -   118955 -----CCAGAGCCGACTCAACGGCGCCTGTGGTCTGTCTTcctttctcatttcgaaaatttgatgaTAAGACCAGAAAACGTGACTTGTCAACCAGTATGCAATCAGCACATCCATGGTATAGTGACCGCCTGAAACAACGAGTGCTCCAATGCCAAGAAAGGTGATAGGCGCGGCAATGTATCTG-------TAAAAAA----------------------------------------------------TGCGACTT--TATGA---------------------ATAAAA---------TCAAGTAGA-------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171436 300 +   783054 acaaaccAAAGTCTACTCAATGGCGCCTGTggtctctcctcttttttcatttcgaaaatttgatgataAGACCAGAAAACGTGACTTGTCAACCAATATGCAATCAAGACATCCATTGTGTAGTGACCGCCAGAAACGACGAGAGCTCCGATTCCAAGGAATGTTATAGGTGCGGCAatgtatctg-------aaaataagcaaAGATTAACGGAAAAGTTTTACGACAAACGCTTTTAATAAAGTTTCCATTGATactt--tgtaagttttttcaatgccTGAGAACATAAAA---CCTCATTCAGCTAGT-------------------------------------
i caePb3.Scfld02_62     I 60 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=652.000000
s ce10.chrX               946037 2 + 17718866 TC
s cb4.chrX              21335820 2 - 21540570 TA
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig24   677623 2 -  1162296 TC
i caeRem4.Crem_Contig24 I 377 C 0
s caeSp111.Scaffold412     40160 2 -   118955 TC
i caeSp111.Scaffold412  C 0 I 138
s caePb3.Scfld02_62       171736 2 +   783054 TT
i caePb3.Scfld02_62     C 0 I 33
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=98199.000000
s ce10.chrX               946039 151 + 17718866 ACCTGAGAATAACGAGACCACGCGGAGTGTACTGCAACTGCACAAAATACATAATTGTGAGAACGACAGTGTGCCCGCTAAACATCAGATCACCGCACAGAATCTTGTCTTGTCCGGATGTCAAGCCCAAAGTGATGACGTAGGTGAGGAA
s cb4.chrX              21335822 151 - 21540570 ACCTGAGAATAACCAGTCCTCTCGGCGTGTACTGCAGCTGGACAAAATACATGATTGTGAGTACAACGGTATGTCCGCTGAACATCAGGTCTCCACAAAGAATCTTATCCTGTCCAGAAGTAAGTCCTAGTGTTATCACATAAGTGAGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   677625 151 -  1162296 ACCTAAGAAGGACAAGTCCTCTTGGAGTGTACTGCAACTGGACAAAGTACATGATAGTAAGCACAACGGTATGTCCACTGAACATGAGATCGCCACATAGAATCTTGTCTTGTCCAGAAGTGAGACCCAGGGTGATAACGTAGGTAAGAAA
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     40300 151 -   118955 ACCTGAGAATAACAAGTCCTCTTGGAGTGTACTGCAATTGAACAAAATACATAATGGTGAGCACAACTGTGTGCCCACTAAACATCAAATCGCCGCAAAGAATTTTGTCTTGCCCAGAAGTCAAGCCCAGTGTTATCACATATGTGAGAAA
i caeSp111.Scaffold412  I 138 C 0
s caePb3.Scfld02_62       171771 151 +   783054 ACCTCAGAATAACTAGTCCTCGTGGTGTGTATTGCAATTGAACAAAATACATAATCGTCAGCACAACAGTATGCCCGCTGAACATCAAATCACCGCAAAGAATCTTGTCCTGTCCAGATGTTAAACCCAGCGTGATAACATATgtgagaaa
i caePb3.Scfld02_62     I 33 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=2178.000000
s ce10.chrX               946190 8 + 17718866 TCTGAA-AT
s cb4.chrX              21335973 8 - 21540570 TCttaa-at
i cb4.chrX              C 0 I 34
s caeSp111.Scaffold412     40451 9 -   118955 CCTGAAGAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171922 8 +   783054 tctgaa-at
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   677776 1 -  1162296 I

a score=273.000000
s ce10.chrX               946198 1 + 17718866 A
s caeSp111.Scaffold412     40460 1 -   118955 A
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171930 1 +   783054 a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21335981 34 - 21540570 I
e caeRem4.Crem_Contig24   677776 1 -  1162296 I

a score=191.000000
s ce10.chrX               946199 2 + 17718866 TG
s caePb3.Scfld02_62       171931 2 +   783054 tg
i caePb3.Scfld02_62     C 0 I 9
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21335981 34 - 21540570 I
e caeSp111.Scaffold412     40461 0 -   118955 C
e caeRem4.Crem_Contig24   677776 1 -  1162296 I

a score=0.000000
s ce10.chrX               946201 387 + 17718866 TTTGAATTCAGTTCCAGGAATATTTTTATATCGCAACTTTAAAAAATAGGGCATTTTCCAAACGTTTGCCTGAATATTCTATATGTATatctaaattttttggtacgtttaatcatgatgtttggtcaccctgcactttaataagtgtattcacacaataaatccgttggtgctactcAGTAGTGGCATATTTTCAGAAATGTGCCCAATGTAAGCAGAATGTAAAAAACGGCATTAATTTTAAGTCATTGAAATAATTTTTAACCCTTAAATTTTATTACTTCCGTAAAATGGCAAAAAGTAGTTTTGCTCACAGATGCCGGTTTTTATGAATTTTCCAAATTTCCCTTTCAGATCTTCAATTAATATTTCTCTCAAAAAACTTCC
e caePb3.Scfld02_62       171933   9 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21335981  34 - 21540570 I
e caeSp111.Scaffold412     40461   0 -   118955 C
e caeRem4.Crem_Contig24   677776   1 -  1162296 I

a score=-135.000000
s ce10.chrX               946588 43 + 17718866 AATTTCGATTCGCAGTTCGAATCAAGCTTTTCAGTTCTCCCAA
s caeSp111.Scaffold412     40461 30 -   118955 AGTTTTGGTTGAAAGGTCTATTC--GCTTTGC-----------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       171933  9 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21335981 34 - 21540570 I
e caeRem4.Crem_Contig24   677776  1 -  1162296 I

a score=-1803.000000
s ce10.chrX               946631 33 + 17718866 TTTTTCCCACAACCTTTATTATTTTTTCGATTG
s caeSp111.Scaffold412     40491  6 -   118955 --------------------------TTTACC-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171942 32 +   783054 TTTTTATGACGTCGTCCCTTGTGTTTTCTCTC-
i caePb3.Scfld02_62     I 9 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21335981 34 - 21540570 I
e caeRem4.Crem_Contig24   677776  1 -  1162296 I

a score=1393.000000
s ce10.chrX               946664 4 + 17718866 TTAC
s cb4.chrX              21336015 4 - 21540570 TCAC
i cb4.chrX              I 34 C 0
s caeSp111.Scaffold412     40497 4 -   118955 CTAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171974 4 +   783054 TCAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   677776 1 -  1162296 I

a score=144134.000000
s ce10.chrX               946668 213 + 17718866 CTCGTCGCGATTTCCATGCCGTACATAGCGGTTCTGTTGACTTGTGGCTGGCAAATTTCATCCCTATTGTGAAAAGAGGGCGGCAGGAAAGTGACACCGAGAATCACGGCACGCAGGCCGTACATGATAGCTCCCAAGAGGAATGTGCGGCGGAGCACAATCCACCGCTGATGGTGAAGGAAGATGATGGTGAAGGCGACGACGGAGCTGAAA
s cb4.chrX              21336019 213 - 21540570 CTAGTTGCGATTTCCATACCGTACATTGCAGTTCGGTTCACTTGTGGCTGACATATCTCGTCTCTGTTGTGAAATGAAGGAGGCAGGAACGTGACCCCAAGAATCACAGCACGAAGACCGTACATGATGGCACCCAAAATGAATGTACGACGAAGGACAATCCACCGCTGGTGATGAAGGAAAATGATAGTGAATGCGACGATAGAACTGCAA
i cb4.chrX              C 0 I 123
s caeRem4.Crem_Contig24   677777 213 -  1162296 CGAGTCGCAATCTCCATCCCATACATTGCAGTCCTATTCACTTGCGGTTGACATATTTCGTCCCTGTTGTGAAACGAAGGAGGAAGGAAAGTCACGCCAAGAATCACAGCGCGAAGTCCGTACATAATGGCTCCCAGGAGGAATGTGCGGCGGAGAACAATCCAACGTTGGTGGTGAAGAAAGATGATGGTGAATGCAACGACGGAGCTGTAA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     40501 213 -   118955 CTTGTTGCAATTTCCACTCCATACATCGCTGTTCTATTCACTTGTGGCTGGCAAATTTCGTCCCTATTGTGAAAAGAGGGCGGCAAGAATGTGACGCCGAGGATCACGGCACGTAGGCCATACATGATGGCTCCCAAGAGAAAAGTCCGGCGAAGCACAATCCAGCGTTGGTGGTGAAGGAAGATGATAGTGAAGGCCACGACAGAGCTGTCA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       171978 213 +   783054 CTCGTTGCAATTTCCATACCATACATCGCAGTTCTGTTTACTTGTGGCTGACAAATTTCATCTCTATTGTGAAAAGAGGGAGGAAGAAAAGTCACACCAAGAATCACAGCGCGAAGGCCGTACATAATAGCTCCCAGGAGAAACGTGCGACGGAGCACAATCCAACGTTGGtgatggagaaaaatgatagtGAATGCAACAacagagctgaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-1326.000000
s ce10.chrX               946881 2 + 17718866 AA-
s caeRem4.Crem_Contig24   677990 2 -  1162296 TA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     40714 2 -   118955 -AA
i caeSp111.Scaffold412  C 0 I 58
s caePb3.Scfld02_62       172191 2 +   783054 -aa
i caePb3.Scfld02_62     C 0 I 41
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336232 123 - 21540570 I

a score=227.000000
s ce10.chrX               946883 7 + 17718866 CAAAAAT
s caeRem4.Crem_Contig24   677992 7 -  1162296 Catacat
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_62       172193 41 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336232 123 - 21540570 I
e caeSp111.Scaffold412     40716 58 -   118955 I

a score=0.000000
s ce10.chrX               946890 574 + 17718866  
e caePb3.Scfld02_62       172193  41 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336232 123 - 21540570 I
e caeSp111.Scaffold412     40716  58 -   118955 I
e caeRem4.Crem_Contig24   677999  30 -  1162296 I

a score=411.000000
s ce10.chrX               947464 27 + 17718866 CAGTTAGCTTCTAGGTAAGACCTAATT
s caeSp111.Scaffold412     40774 26 -   118955 CAATCAACTTATAATTTGGATCTCAT-
i caeSp111.Scaffold412  I 58 C 0
e caePb3.Scfld02_62       172193 41 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336232 123 - 21540570 I
e caeRem4.Crem_Contig24   677999 30 -  1162296 I

a score=0.000000
s ce10.chrX               947491 5 + 17718866 GCAAA
e caePb3.Scfld02_62       172193 41 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336232 123 - 21540570 I
e caeSp111.Scaffold412     40800 0 -   118955 C
e caeRem4.Crem_Contig24   677999 30 -  1162296 I

a score=-1076.000000
s ce10.chrX               947496 3 + 17718866 ATA--
s cb4.chrX              21336355 2 - 21540570 --AT-
i cb4.chrX              I 123 C 0
s caePb3.Scfld02_62       172234 3 +   783054 --ATC
i caePb3.Scfld02_62     I 41 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     40800 0 -   118955 C
e caeRem4.Crem_Contig24   677999 30 -  1162296 I

a score=146656.000000
s ce10.chrX               947499 236 + 17718866 GCTTACCTAACAGTCGAGAGCACATCTCCAACACTCCACGCCCATCTTTGTTGTGGAATGATCATGAAAGTGAGATCGGGAAGCGGCTGTCTAGGTACCACGTCGTGAATGACTGTGAGCAAGAAGAAGTTGAGAAACGCTGATAGCATGAGACACAAAAACGCCGTCAGTGTCTTGAAGCCCTCAGAGTTTCCGTGGTGCTCATGGTG--GA-ATGTGTCTTCGCAGGTGAACTGTAA
s cb4.chrX              21336357 237 - 21540570 --TTACCTGACAGTAGACAGAACATCTCCAACACTCCATGCCCATCTCTGTTGTGGAATGATCATGAACGTGAGATCAGGAAGTGGCTCTCTAGGCACGACATCGTGAATCACAGTGAGAaggaagaaattgagaaatgcAGAAAGCATGAGGCACAAAAACGCCGTCAACGTTTTGAAACCTTCCGAATTCCCATGATGTTCATAATGTTGATATGTGTTTTCACagatgaactgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   678029 236 -  1162296 GCTAACCTGACAGTAGAAAGTACATCTCCAACACTCCAAGCCCATCTTTGTTGTGGAATTATCATAAAAGTGAGATCAGGGAGTGGTTGTCGGGGAACGACGTCATGGATTACTGTGagcaaaaagaaattgaggaaTGCGGAGAGCATGAGACACAGAAATGCAGTCAATGTCTTGAATCCTTCGGAATTCCCATGATG--AACACTGTGGA-ATGTGTCTTCGAGAGTGAACTGCAA
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold412     40800 235 -   118955 -CTTACCTCACAGTAGAAAGAACGTCTCCAACACTCCAGGCCCAACGCTGTTGTGGAATAATCATAAATGTGAGATCGGGAAGTGGCTGACGTGGAACAACATCATGAATGACCGtaagcaagaaaaaattgagaaacgCGGACAACATAAGACACAAGAACGCTGTCAATGTCTTGAATCCTTCTGAATTTCCGCGATGTTCATGATG--AA-ACGAATTGTCATAtgtaaactgaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       172237 236 +   783054 GCTTACCTCACAGTAGACAGGACGTCTCCAACACTCCATGCCCATCTTTGTTGGGGAATAATCATAAAAGTGAGATCGGGTAAAGGCTGTCGAGGGACCACATCATGGATTACTGtgagaaggaagaagttgAGAAACGCGGAGAGCATGAGACACAAAAATGCTGTCAGTGTTTTGAATCCTTCCGAGTTTCCATGGTGTTCATGATG--GA-ATGTGTTTTCGCAGGTgaactggaa
i caePb3.Scfld02_62     C 0 I 495
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-2082.000000
s ce10.chrX               947735 16 + 17718866 TATTT-AATTTGTAATT
s cb4.chrX              21336594 17 - 21540570 attgatactGTGTGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   678265 11 -  1162296 TATTA------GAAATT
i caeRem4.Crem_Contig24 C 0 I 308
s caeSp111.Scaffold412     41035 11 -   118955 ------aatgtttgtaT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       172473 495 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-798.000000
s ce10.chrX               947751 7 + 17718866 TTATTAG----
s cb4.chrX              21336611 5 - 21540570 ------GAAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     41046 7 -   118955 TCATCAG----
i caeSp111.Scaffold412  C 0 I 428
e caePb3.Scfld02_62       172473 495 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   678276 308 -  1162296 I

a score=610.000000
s ce10.chrX               947758 21 + 17718866 GCATTTG--TTGATATTATTTTT
s cb4.chrX              21336616 23 - 21540570 GCGTTTggactgaaaatatgttt
i cb4.chrX              C 0 I 484
e caePb3.Scfld02_62       172473 495 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     41053 428 -   118955 I
e caeRem4.Crem_Contig24   678276 308 -  1162296 I

a score=0.000000
s ce10.chrX               947779 330 + 17718866 GTACCCTATTTTTTTGGCAGCTTAAATGCTTTTCCTTCCTTATTTTAGAGCCACTAGTAAAACTATTTTGCATGTGTGTGGTTTTTTTCTGGTTTTTTATCGAAACTAATTGCCAAAGCCTTTTTTTTATTCCTCCATCTTCACGTCAAAAATTTGGCCCCGTTATAGTTGCAGCTGTGAAACTGATGCCCACGCACTTTCACTCATGCGGAATTATAATATTTCGTCAATTTCAAATTTCGTTCTCAAGTTTAACGAATAGCCGGAATGAATCACCACGCAAGTACGTGGAAAATCAGGCCAATTTCTCTCAGTTTCTAAAAGTCATAT
e caePb3.Scfld02_62       172473 495 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336639 484 - 21540570 I
e caeSp111.Scaffold412     41053 428 -   118955 I
e caeRem4.Crem_Contig24   678276 308 -  1162296 I

a score=-3513.000000
s ce10.chrX               948109 575 + 17718866  
s caeRem4.Crem_Contig24   678584 499 -  1162296  
i caeRem4.Crem_Contig24 I 308 C 0
e caePb3.Scfld02_62       172473 495 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336639 484 - 21540570 I
e caeSp111.Scaffold412     41053 428 -   118955 I

a score=-1292.000000
s ce10.chrX               948684 48 + 17718866 -----cattttgcaaaattTTGGATTATTTAGATACATGGTATAAATCCAAAA
s caeRem4.Crem_Contig24   679083 33 -  1162296 CATTTTCCTATTCAAAACCTTGATCTGT---------TTCca-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       172968 48 +   783054 -----CACTATTTAGTACTTTGTACTTTTGAcgtaaatttcagaaacataagg
i caePb3.Scfld02_62     I 495 I 1
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336639 484 - 21540570 I
e caeSp111.Scaffold412     41053 428 -   118955 I

a score=-2848.000000
s ce10.chrX               948732 20 + 17718866 TTTCTCAAAGTATTTCCT---AA
s caeRem4.Crem_Contig24   679116 18 -  1162296 ---tttcattctatttttctg--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41481 18 -   118955 tttttcaaaccttTTCTT-----
i caeSp111.Scaffold412  I 428 C 0
s caePb3.Scfld02_62       173017 13 +   783054 ttctatgaa-----tttt-----
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21336639 484 - 21540570 I

a score=44177.000000
s ce10.chrX               948752 277 + 17718866 TTTCCACTAACCTCTTTCCTAATTGGTGTTGGCTCCGGATCAATTGGGTCTATATTGATAACTATCCCATTACTAACACATGGGTCCCGTGACTGGAGCACATCTGTGAACTCCGAACTGTTTGTCATCTGGAATAAAGGTTAAGTTCTTTAGCATT-----TTTTAAAATCAAATAGAGA---------AAAAAAAATAAAACAGGACATGGATTAAGGAAGCTGGCGCATATGACAATTTTTCATTTTAGAACATGAGAGAACTTGGAAACTAATGTGAAAAAAAACTA-
s cb4.chrX              21337123 285 - 21540570 tctTTACTCACCTCTTTTTGAATAGGAGTTGGCTCTGGGTCTATAGGGTCTATGTTGATAACAATTCCATTACTGGCACATGGATCCCGCGACTGGAGCACATCTGTGAACTCCGACCTGTTTGTCATCTGGGAAAAAACAGAGATTGCAAGacgttgaaaaatgaaagataTAATAGGGAATGGGAGAGAAAAATACTTAGGC--GTGACGAAAAAATGTTGC-GAGTGATAAATCTTTGTTTTATTTC--AACGTGA-CTTTCTTAGAAATTATTGctataaaaaatca-
i cb4.chrX              I 484 I 359
s caeRem4.Crem_Contig24   679134 204 -  1162296 tatttacTGACCTCTTTTCTAATCGGTGTCGGTTCTGGATCAATTGGGTCTATGCTAATCACTACTCCATTGCTAACACACGGATCTCGTGACTGAAGTACATCTGTGAATTCCGAACTGTTTGTCATCTG----AAAAGAAAGTTTGTGTCATGTT-----ACTAGCGATAGCAGAGTGA---------AAAAAGACGGAgac----aacaaagaaa---------------------------------------------------aaagcatt---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     41499 208 -   118955 TCCACACATACCTCTTTTCGAATTGGCGTCGGCTCTGGATCAATAGGATCTATGCTGATGACTATTCCATTACTAACACAAGGATCACGAGACTGCAGGACATCTGTGAACTCCGAACTGTttgtcatctg----aaa------------------------------aatatta----gaatTGC----GGTAAAacaaaatc----tatttttgaacattgc-AGCGTGAAAAGTAGTTATTTG-----------------------AAGTGATT--------------T
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173030 223 +   783054 tttgaacatactTCTTTTCGAACTGGAGTTGGTTCTGGATCGATTGGGTCTATTGTGATAACTGTTCCATTGCTGATACATTGGTCCCGTGATTGTAGTACATCTGTGAACTCCGAGCTATTAGTCATCTG----AAA-------TTGTTCACTGTA-----ATCGACAAATTTA--GTGAAATTC----AATAACACACA-----------TATAAAGAACGC-AAGCTGTTTAGTAATTTCTTGtt---------------------aagaaatt--------------a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-14677.000000
s ce10.chrX               949029 155 + 17718866 GACAAAAACTTAAGTGAAGAAAAAATTTGTATGTGA-------TGTTAAATAAATTGCGCACGA---------------AAATTGGGT--TTATTCCAACTT----------ACACTGATC-AAAAGTTAAGAAAAAACTTAATAAACTCATAATTGAATATATAAAATTTGTAGGCAAAACACATTTTC
s caeRem4.Crem_Contig24   679338 144 -  1162296 ---------------gataaaaagttta---tttgaTTAGCCGTTTGA---AAATGCCACAAAATTATGGCGTTGTGGAAAATAAGAgggtttttctaattttttgttcacttCTCTGTTCGAAAAGTTatataattaaataaaaaacg-------------------------aacAAAACGCGTTTGC
i caeRem4.Crem_Contig24 C 0 I 29
s caeSp111.Scaffold412     41707 105 -   118955 ---GAAGA--------CCAACAaacttt---tctga-------tttga---aaattttataagA-----------TATAAAACAGAAG------------------------CTGCTTTTTGAGAACATGAACATAAACATGAGCAACG--------------------------TCAAAATACGTCACT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173253  97 +   783054 ---gaaaaggcatgtggaaaaaaggttt---tgaaa-------atcga---aattttgtttag----------------aaactgtaa------------------------tttctattgaaaaatataaaaat-------tgcaACT------------------------------AATAAATTAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337408 359 - 21540570 I

a score=-3192.000000
s ce10.chrX               949184 48 + 17718866 TTTTATTAGTGACGAAAACAGTAATC-----------GCTACATTTGAAATTAAAAGCT
s caeSp111.Scaffold412     41812 50 -   118955 TT-------TGTCAAAAGTTGCAAcattcctttcttctctcgaTAAGTAACTAAGAG--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173350 29 +   783054 T----------TCGGAAGT------------------GTTCTATATGAAATTGCGCA--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337408 359 - 21540570 I
e caeRem4.Crem_Contig24   679482 29 -  1162296 I

a score=-12454.000000
s ce10.chrX               949232 101 + 17718866 TGCCAAAATTTTAAAGTTGTGTTCAAATGATTAACTGTCATGGTTGGACAAAGAATTGAGCTTTTAACAATTT---TTTTAAAAACA-AATCACTGCAAGTTGTC-----
s caeRem4.Crem_Contig24   679511  61 -  1162296 tgtcacattttt----tcgcgt--------------------------caaaaaat-----------caattc---ttcACAAAAGAGAATCTCAGCCGCTTATC-----
i caeRem4.Crem_Contig24 I 29 I 35
s caeSp111.Scaffold412     41862  51 -   118955 ------ACTTCC----Ccgt-----------------------------caaaaat-----------caattacgCATTGTGTCACAGAGTGTT---------TCCTTCA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173379  31 +   783054 ------GTTTAT----TTGT--------------------------------------------------------GTTAAGTAACACaatcat---------tcc----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337408 359 - 21540570 I

a score=-3312.000000
s ce10.chrX               949333 69 + 17718866 TTTCAAAAAGGAAGTTATAAAGAAAATGTTCGATGTAGAAAAGCAATGTCAAAAACAGCTCAATAACAA
s caeSp111.Scaffold412     41913 52 -   118955 TCTCA---------CTATACAAAACACATT---tgccaaaaaatgat-----aatagaTTTAATTACAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173410 15 +   783054 ----------------------------------------------------gaaaaattcaattat--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337408 359 - 21540570 I
e caeRem4.Crem_Contig24   679572 35 -  1162296 I

a score=18568.000000
s ce10.chrX               949402 376 + 17718866 -TGCCAAAATCAATAAACAAACCGGTTAAGGTGGTATTGAGCAACAAAAAAAAGAAGCGAGAAAAGTAAAGTTAATAGGCTGTTTTTCGC--GTATTCTCTCTTTCTCTCTTTGCCTATTTTTCCAAACAGAGATACAACGAGAGAATGAGAGACGACACAATTGTGACATAGACACACACACATACACAATGAGATATTACAAGGGATAGAGAAGGGAGGAAGAGGGGTTTATGGGTGCATTGGTGGGTGCTCTCTCCCTCTCTTCATCTCACTCTCTGTGCGGTGTCTCAATCCGCCCGATCATCCTCACCGGTTTCGAGAAGGAGGCGTACGCAATGTGTCGTCGTTTGTGGCGCAATTGCGGACGCCCCCGA-CCG-------------
s caeRem4.Crem_Contig24   679607 259 -  1162296 -Tgcgaaaaac-----tggaaattgaaaGGGGG---CTGGGCgcgtaaaaacaaa------aaaagtaaagttaATAAGTTGTTTTTCGTTCGGGTTCGCGttttttttCCGAACCGG---------------------------GAAGCAAGACAAGACAATTGTGACATAG----------ACACACAATAAGATGGC----------------GGAGAAGACAAGGTTTATGGGTGCATTGGCGGGCTCGCCCTC-----CTCC----------------------------------------------------GACGGGAAGACGTACGCAATCCGTCGTCATTTGTGGTGCAACTGCGTACGCTCCCTC-TCTC--ACCA------
i caeRem4.Crem_Contig24 I 35 I 6
s caeSp111.Scaffold412     41965 271 -   118955 TggcaaaaaattataaaggAACGCGTGa----------atattaataaaaaaagc------gAACACGAAAAGAAtagttgttttcttgt-----ttctgtttttttt----ggcCAAACAtagtgaagaga--------aaaagaaaaaaagacaaggCAATTGTGACATAG----------ACACACAATAAGATGGT--------------GGGAGGAGGATGAGGTTTATGGGTGCATTGGCGAAAGG-----------CTAT----------------------------------------------------GAGGGGAAGAGGTACGCGATGTGTCGTCATTTGTGGTGCAATTGCGTCCGCCCTCTCGCCTCCGACCCCT--CT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173425 269 +   783054 ------aaaat-----aggaaaccgcta----------aaatgtgaggaaaaagt------aaaaacagaGTTAATAGGCTGTTTTTCGT-----CTCGCGTTTTTCA----AACCGA---------------------------CAACCAAGACAAGATGGGTGTGACAT------------ACACACAATAAGATGAC-------CTATACGAGGAGAAAGGCGAGGTTTGTGGGTGCATTGGCGGGAAGGCACTC-TTCTCTATCTCT-------TCTGCGGAA-------------------------------AAAGAGACATTGGGACGCAATGCGTCGTCATTTGTG--GCAACTGCGTACGCCCTCTC-TCTCACACCCCTCCCt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337408 359 - 21540570 I

a score=38124.000000
s ce10.chrX               949778 58 + 17718866 CATCATTTGTTTTCAAAT----------GAGGACTCCTGGCCAAACATACATGCTAATTTTTTGCTCT
s cb4.chrX              21337767 68 - 21540570 CAtcatttgttttgaaaagagGAGGGAGGACGACTCCTAGCCAAACGCACATGTTAATTATCGGtttt
i cb4.chrX              I 359 I 476
s caeRem4.Crem_Contig24   679872 60 -  1162296 Catcatttgttttcaaatga--------gAGGACTCCGGGTCGAATATACATGCTAATTATCGGtttt
i caeRem4.Crem_Contig24 I 6 I 5
s caeSp111.Scaffold412     42236 58 -   118955 Caccatttgttttcaaat----------gaggACTCCTAGGCGAACATACATGCTAATTATCGGTTTT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173694 58 +   783054 catcatttgttttcaaat----------gaggACTCCTGGTCAGACATACATGCTAATTAtcggtttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=1274.000000
s ce10.chrX               949836 6 + 17718866 CCATCT
s caeRem4.Crem_Contig24   679937 6 -  1162296 CTGTCT
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold412     42294 6 -   118955 TCGCTT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173752 6 +   783054 tcgttt
i caePb3.Scfld02_62     C 0 I 111
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I

a score=-1724.000000
s ce10.chrX               949842 5 + 17718866 CTCTC---
s caeRem4.Crem_Contig24   679943 5 -  1162296 -CCCCG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     42300 5 -   118955 ---TTGTC
i caeSp111.Scaffold412  C 0 I 168
e caePb3.Scfld02_62       173758 111 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I

a score=191.000000
s ce10.chrX               949847 2 + 17718866 TC
s caeRem4.Crem_Contig24   679948 2 -  1162296 TC
i caeRem4.Crem_Contig24 C 0 I 145
e caePb3.Scfld02_62       173758 111 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I
e caeSp111.Scaffold412     42305 168 -   118955 I

a score=0.000000
s ce10.chrX               949849 800 + 17718866  
e caePb3.Scfld02_62       173758 111 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I
e caeSp111.Scaffold412     42305 168 -   118955 I
e caeRem4.Crem_Contig24   679950 145 -  1162296 I

a score=387.000000
s ce10.chrX               950649 10 + 17718866 ATTCAATTCG
s caeRem4.Crem_Contig24   680095 10 -  1162296 atttcattct
i caeRem4.Crem_Contig24 I 145 C 0
e caePb3.Scfld02_62       173758 111 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I
e caeSp111.Scaffold412     42305 168 -   118955 I

a score=-2158.000000
s ce10.chrX               950659 48 + 17718866 TAACGCGTATGA---TTTATTCAAAGTTTGACGCTTATTCTCG-----CTACGTTT--------
s caeRem4.Crem_Contig24   680105 42 -  1162296 ttcc--GTCGcatgttttattcaa---ataataCGT----TCA-----CAATATGC--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       173869 54 +   783054 TACCGAGTAGCA---TTTATTCGA---TTAACTCGT----TCGGTTTTTAATTTCTgtttataa
i caePb3.Scfld02_62     I 111 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I
e caeSp111.Scaffold412     42305 168 -   118955 I

a score=-3353.000000
s ce10.chrX               950707 47 + 17718866 -----------TTCTCTTTTTCTC-TCTTTTTTTTGCCTAGGTGTCATTCATTTC-TCAA
s caeRem4.Crem_Contig24   680147 42 -  1162296 -------------CTCTTTGACAC-TCTTTTCCTCGCTcatgtttccatttttcta----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     42473 50 -   118955 ttcttttttgattattttta-----tttattcgaagcgtatgtttcgttttgttc-----
i caeSp111.Scaffold412  I 168 C 0
s caePb3.Scfld02_62       173923 44 +   783054 -----------ttatttttgtcgCCTTTATGCTCATTGTTTGTCTAGCTTTTCAC-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21337835 476 - 21540570 I

a score=28263.000000
s ce10.chrX               950754 383 + 17718866 -----------TTTCGTTCACTTTTCAATTTTCAGCTCGATTGCTAGTTTACTAGTCA-ACAATGGTAGATGAGGACAAAAAATCGGGCACAAGGTTGGTGGAACTGGGAAAATAATTTTTTT---------TTAACTTTAAACGTATATAAA--AAA---AGACAAATTTTGCAGAGTGTTCAAAAAGACGAGCCCAAATGGAAAAATAACCACATATCTTGGCAAAAGAGATTTTATCGACCGCGGTGACTATGTCGACTTGATAGGTGAG--A-----------------------------ATAAGGGCACCGAGC--CACAGAATGTGGGCTTTATACTGACTGGTTTATCGCGTGATTTGG--TTTAGAGCG-TTGATTGGTTTTTTGCGCGTTTTCTGAGTATGGAAGTCGGTTGG---CAG-------AAACCTCGCAAATTTTCTA---
s cb4.chrX              21338311 349 - 21540570 --------tttcccca---atttttgtCTTTACAGATCGA----CATTctcaaatcagaaaaatggtCGATGAGGATAAAAAATCGGGGACGAGGTGAGT--------------------TTC---------TGCATTTTCAAC-ATTAAATACCTCC---AAATAGATTTTCCAGAGTATTCAAGAAAACAAGCCCGAATGGAAAAATCACAACATATTTGGGGAAACGAGATTTCATCGACCGCGGCGATTATGTTGATATGATAGgtgag--t-----------------------------tcaaattttttgaat--gaacaaCCCCAAGATATCCCCAAG----TTTGT--ATcgattcat------gaaat-ttttttgagatt---cacaCTATATTGTTCTAGAATTAGTTTTG---TTCCCTAGTAACCATgtgca------ttt---
i cb4.chrX              I 476 C 0
s caeRem4.Crem_Contig24   680189 393 -  1162296 ----------ttttca---accTGCCAGTTTTCAGACCGA---GCGCTGTAGTAGTCG-ACGATGGTAGATGAGGACAAAAAATCGGGCACAAGGTGAGT---------AAAATAAGCTATTC---------TTTATTTCTAGTAACTCTAAACCTAA---CATTTGGTATTTCAGAGTGTTCAAAAAGACAAGtccaaatggaaaaataaCCACATATCTCGGAAAAAGAGACTTCATCGACCGCGGTGACTATGTCGACCTGATAGGTAAG--TGATGGCTTATATAGGGGCTCTCGGCcctataaaacttttttaat--a--------cGAGGTTTTGGTCAG----TTTATTGGGTGATTTGCATGTTAGAAGT-GTTTTTGAGatt-----gaatatctgaaaaaagaagcaattaTG---TTGTTTTGCTTCATTCTTCAGA--GTTTTCTA
i caeRem4.Crem_Contig24 C 0 I 80
s caeSp111.Scaffold412     42523 340 -   118955 ttacaaaattttttcat--ttatctcAGTTTCCA----GA---GTCTGCTAGTAGTCA-GCAATGGTAGATGAAGACAAAAA-TCAGGGACTAGGTAAAC----------------AGTGTTTTGATG----TTCATTTAT--------------------ACTTCAATATTTTAGagtgttcaaaaaaacaagtccaaatggaaaaataactACATATCTCGGGAAACGTGACTTCATCGACCGTGGTGACTATGTGGACTTGATAGGTGAGAAG-----------------------------TAAACCT----------GAAAACGCCATTGTTTTCTATAAAATGTTTCGG-GTGTCACTTGT------GACTTAGTGTTAGT-TTT---CTTGGT-----------GAGCAAAATTTG---TGGTATCAGCAAAGGCtgaaaacctattt---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       173967 350 +   783054 CTTTATTCTAGTTTCA---CTATTTCAGGTTTC----------GTTTGGTGA-----A-ACGATGGTGGATGAGGACAAAAAGTCCGGCACtaggttggt----------------ttttttcttatgaGAACTCCTTTAGCTGGGCTGTGAACCAAAACAATTTGGTAATTATAGAGTGTTCaaaaaaaCGAGTCCAAACGGAAAAATCACCACATATCTTGGGAAACGAGATTTCATCGACCGAGGCGATTATGTCGACTTGATAGGTGAG--T-----------------------------TAGAGCTACTTGTATAGGGAGAAGTTCAGGAATTCTATACA----TTTG---------TTAT------GAGTT-GTGTTGACGTTT---TGTACT-----------GAAATAATAATGAGTTGGTAT-----AACTCctcgaacattttt---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-7244.000000
s ce10.chrX               951137 39 + 17718866 TTCGACGTACAAAATAAGGAAAACGCTTTTATTGGTCAT-------------
s cb4.chrX              21338660 22 - 21540570 -----------------gaaaaa---tattattattattatt----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     42863  8 -   118955 ----------------------------ttaatCGT----------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       174317 24 +   783054 ----------------------------tcattagagTTTTCTGTTAGTTTT
i caePb3.Scfld02_62     C 0 I 175
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   680582 80 -  1162296 I

a score=-3143.000000
s ce10.chrX               951176 39 + 17718866 AGCACTGACAAAAAATGTTATAGCACTGACCAAAAATGT---------
s cb4.chrX              21338682 24 - 21540570 -------------attattgtacC-----------ATGCCGCTTCCCT
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold412     42871  6 -   118955 ------------------TGTACC------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       174341 175 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   680582 80 -  1162296 I

a score=-10749.000000
s ce10.chrX               951215 83 + 17718866 TATAGCACTGACAACATAGAAATGAACGCA----------ATTACTGAATAGTGCGACTAAGACGGGAGTAGTCAAAAAATTTTACC--CTATTA
s cb4.chrX              21338708 42 - 21540570 TGACTTgctgaaaacttggaattaATCGTG----------ATTAT-----------------------------------Tcccacc--------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   680662 36 -  1162296 TGTCTCCCAGACAACAT-------ATCGTG-----------TTTT-----------------------------------TCCCACCGG------
i caeRem4.Crem_Contig24 I 80 C 0
s caeSp111.Scaffold412     42877 58 -   118955 ---TTTTTGGATAGTGT---GTTAATCACCTAAATcaccaatttt----caatttcact-----------------ataatccta----------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       174341 175 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=178942.000000
s ce10.chrX               951298 302 + 17718866 -------AGAATT---AATTTTAGATGGAATGGTTTTGATCGACGAGGAGTACATCAAAGACAACAGAAAAGTGACAGCCCATCTGCTAGCAGCTTTCCGATATGGCCGAGAAGACCTCGACGTGTTAGGGCTCACATTTCGAAAGGATTTGATATCAGAGACATTCCAAGTGTATCCACAGACTGATAAATCAATTTCTCGACCGTTGTCTAGACTGCAAGAACGGCTGAAGCGAAAACTTGGTGCAAACGCGTTTCCATTTTGGTTTGAGGTTGCGCCAAAAAGTGCAAGTAGTGTTACTCTACAGGTTG
s cb4.chrX              21338750 304 - 21540570 -----aaattttt---ttcttcagatggCATGGTTCTCATCGACGAGGAATACgtaaaggaaaacaaaaaagtaactGCACATCTACTAGCTGCATTTCGCTATGGGAGAGAAGACCTTGATGTGCTCGGATTGACGTTTCGTAAAGATTTGATATCGGAAACGTTTCAAGTGTTCCCACAAACGGAGAAAGCTATCGCGCGACCGTTAACAAGGTTACAAGAACGGCTGAAACGAAAACTTGGTCCAAATGCCTATCCGTTTTGGTTCGAAGTTGCACCCAAAAGTGCAAGCAGTGTCACTCTTCAGGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   680698 308 -  1162296 ----AAAATTCGTATAATTTCCAGATGGAATGGTTCTGATCGATGAAGAATACataaaggaaaacaaaaaagtgacggCGCATCTCCTGGCTGCTTTCCGATACGGAAGAGAAGACCTTGACGTGCTCGGACTGACGTTCCGCAAggatttgatttcagaaacgTTTCAAGTATATCCACAGACAGACAAAGCGATCGCAAGACCGCTATCGAGATTGCAAGAACGATTGAAAAGGAAACTTGGAGCAAATGCATTCCCATTTTGGTTCGAAGTATCGCCTAAAAGTGCAAGTAGTGTTACTCTTCAGGTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     42935 300 -   118955 -------attttt---gatttcagatggaatGGTACTTATCGATGAAGAATACATAAaggaaagcaaaaaagtgacAGCACACCTTTTGGCAGCTTTCCGATATGGCAGAGAAGACCTTGATGTGCTTGGACtaacttttcgaaaagatttGATATCAGAAACGTTTCAAGTGTATCCACAGACCGAGAAAGCTATTTCGAAACCCTTATCGCGACTACAAGAGCGCCTAAAACGAAAGCTTGGAGTAAATGCATATCCTTTTTGGTTTGAAGTTGCGCCTAAAAGTGCGAGCAGTGTTACTCTTCAGGT--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       174516 304 +   783054 acaaataattttc---a-----agaTGGAATGGTCCTTATCGATGAGGAATacataaaagaaaacaagaaagtaaCAGCACATCTTCTGGCTGCTTTCCGATATGGCCGAGAAGACCTTGATGTTCTTGGATTGACATTCCGCAAAGATTTGATctcagaaacttttcaagtgTTTCCTCAAACCGATAAAGCAGTTGTGAGGCCTTTGTCAAGATTACAAGAGCGGCTAAAACGAAAACTTGGTGTAAATGCATATCCCTTTTGGTTTGAAGTGGCTCCAAAAAGCGCCAGTAGTGTCACTCTCCAGGTAA
i caePb3.Scfld02_62     I 175 I 13
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-3554.000000
s ce10.chrX               951600 22 + 17718866 GTTTTGTTT-TTTTGTGGCCTGT--
s cb4.chrX              21339054 15 - 21540570 -------GT-TACGATAGTCGTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   681006 16 -  1162296 -------GTATTCAGTATTCGGT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43235 17 -   118955 -------AT-TGAGAGGGTTTGAgg
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       174820 13 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=47516.000000
s ce10.chrX               951622 160 + 17718866 TTT---TTCTTATGAATTCAATGTTATGAATTTAGTAGTTAAAGCCTATCAAAATTTCAGCCAGCCCCCGGAGACACCGGCAAGCCATGTGGAGTGGACTACGAGCTGAAAACATTTGTGGCAGTAACTGACGGAAGTAGTGGAGAGAAGCCGAAAAAGAGGT
s cb4.chrX              21339069 129 - 21540570 -CT---CCTCCGAAAAAC--------TGTATC----------------------ACCCAGCCTGCACCTGGAGACACTGGGAAACCTTGTGGAGTGGATTATGAACTGAAAACTTTCGTTGCCTGCACAGAATCAggcaattcagaaaaatcaaagaaaaggT
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24   681022 138 -  1162296 -CGGAATCTGCAAAAACC--ACATAATACGTC----------------------TTTCAGCCAGCTCCGGGAGACACTGGCAAACCATGTGGAGTGGATTATGAGTTGAAAACGTTTGTGGCAGTGACTGATGGAAGCAGTAGCgagaaaccgaagaaaaagt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43252 129 -   118955 --t---ttattgaaaatcaaacgTATTTT-----------------------------AGCCAGCGCCTGGGGACACCGGCAAACCTTGTGGAGTCGATTATGAGCTCAAAACGTTTGTGACTGTGGTAGATGGAAGTAGCGGAGAGaagccaaaaaagaagt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       174833 137 +   783054 -tt---tttttgaaaaataaaaatattttttt----------------------attcagccTGCACCAGGGGACACGGGAAAGCCCTGCGGAGTAGATTATGAGCTCAAAACATTTGTGGCTGTTATGGATGGGAGTTCTGGGGAGAAGCCGAAAAAGAGGT
i caePb3.Scfld02_62     I 13 I 2
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-5559.000000
s ce10.chrX               951782 38 + 17718866 AAGTATTTAGAATAATATATGGATTACAACAACGGAAA-------------
s caeRem4.Crem_Contig24   681160 33 -  1162296 --------------GGGTGAACGTTATAA----AGAAATTCCCTCCGGAAA
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold412     43381 30 -   118955 ----------aagGATATGggttctttaa----aaaaattccgt-------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       174972 30 +   783054 ----------GAAAATCTGAGAGGGtcag----gaaaatgatga-------
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339198 30 - 21540570 I

a score=191963.000000
s ce10.chrX               951820 369 + 17718866 TTAA-----TTTTTAGCGCACTTAGCAACACTGTCCGTCTTGCCATCAGAAAACTGACCTACGCACCATTTGAATCCCGTCCCCAGCCAATGGTCGATGTATCCAAGTACTTTATGATGTCCTCAGGACTTCTCCATATGGAGGTCTCCCTGGATAAAGAGGT-ACCTCGAATTATTTTAATTCAATGTTAAGATAAACG--TTCAAATT--T--TAGATGTACTACCACGGCGAGTCGATTTCAGTTAATGTGCACATCCAGAACAACAGCAACAAGACGGTCAAGAAGCTGAAGATTTACATCATTCAAGTTGCTGATATTTGTCTCTTCACAACTGCTTCGTATTCCTGCGAGGTTGCCAGGATTGAGAGCAAGTAAG
s cb4.chrX              21339228 365 - 21540570 TTTT-----CTTCCAGCGCAATAACTAACACCGTCCGTCTTGCCATCAGAAAGTTGACTTACGCTCCGTTTGAAGCACGCCCACAGCCAATGGTCGATGTCTCGAAATATTTCATGATGTCATCCGGTCTTCTGCACATGGAAGTTTCATTGGACAAAGAAGT--------A-GGACTATATTCATGCCCCTTTTAAAAGGAAGtttttttAT--CAGATGTATTACCACGGAGAATCTATCGCTGTTAATGTGCACATTCAAAACAACAGCAACAAAACGGtcaaaaagctaaaaatatgTATCATCCAAGTAGCCGATATTTGCCTTTTTACAACTGCTTCCTACTCATGTGAAGTTGCTCGTATCGAGAGCAAGTAAG
i cb4.chrX              I 30 I 13
s caeRem4.Crem_Contig24   681197 362 -  1162296 TCCA-----TTTTCAGCGCTCTCAGCAACACCGTCCGCCTTGCCATCAGAAAGTTGACTTACGCTCCATTTGAATCTCGCCCTCAACCGATGGTTGACGTCTCCAAGTATTTTATGATGTCCTCTGGACTTTTGCATATGGAAGTGTCATTGGATAAAGAGGT--------ATTTAGTAAATTTATATTTCTCATACCCG--AGTCACTT--T--CAGATGTACTACCATGGTGAATCCATTGCTGTTAATGTGCATATCCAgaacaacagcaacaaaaCTGTCAAGAAACTCAAAATCTGCATCATCCAAGTTGCTGATATTTGTCTGTTCACTACTGCATCTTACTCTTGTGAAGTTGCTCGGATTGAAAGCAAGTGAG
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold412     43411 361 -   118955 -ttt-----tttccagcGCGCTCAGTAACACCGTTCGCCTTGCCATTCGAAAACTTACATACGCTCCATTTGAATCTCGCCCGCAGCCAATGGTTGACGTATCTAAATATTTCATGATGTCTTCTGGACTTCTGCACATGGAAGTGTCTTTAGATAAAGAGGT-CAGttcttttgattaaaa--atgatttttat-------gtTTGATT--T--AAGATGTATTATCATGGAGAGTCAATTGCTGTGAATGttcatattcaaaacaaCAGCAACAAAACTGTAAAGAAGCTTAAGATATGCATAATCCAAGTAGCCGACATCTGCCTATTCACCACAGCTTCTTATTCTTGTGAGGTTGCACGAATTGAGAGCAAGTGAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       175002 372 +   783054 -atctgaaatttccagtgcTCTCAGTAACACCGTTCGTCTTGCCATTAGGAAACTGACATATGCTCCGTTTGAATCTCGGCCACAACCAATGGTTGATGTTTCTAAATATTTCATGATGTCTTCTGGACTTTTACACATGGAAGTATCTTTGGACAAAGAGGTGCGTTTCAAATGCTTGCAA-----ACTCtcataaaaa-agttcaatt--ttctagaTGTACTATCACGGAGAATCAATTGCTGTGAACGTTCATATCCAAAACAACAGCaacaaaactgtcaaaaaattaaagatttGTATAATCCAGGTAGCTGATATCTGTTTATTCACAACTGCATCGTATTCATGTGAAGTAGCTCGAATTGAGAGCAAGTAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=617.000000
s ce10.chrX               952189 20 + 17718866 ATTTTTGTTTTACTATAATA
s caePb3.Scfld02_62       175374 16 +   783054 ----TGGTTGTACTACAAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I
e caeSp111.Scaffold412     43772  0 -   118955 C
e caeRem4.Crem_Contig24   681559  0 -  1162296 C

a score=0.000000
s ce10.chrX               952209 134 + 17718866 CATTTGATTCGAAAAAGTAGTACATCAGTTCGCATTCTGCCCTACTAGCGCTACACTACTCTTACAACATTCTAGTTTTCCACAGTTCACTGTCATTTCTAGAACGGAGGTACAGGAGATGCACAATTGATTGT
e caePb3.Scfld02_62       175390   0 +   783054 C
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593  13 - 21540570 I
e caeSp111.Scaffold412     43772   0 -   118955 C
e caeRem4.Crem_Contig24   681559   0 -  1162296 C

a score=784.000000
s ce10.chrX               952343 11 + 17718866 TTCTTGTTCCC
s caePb3.Scfld02_62       175390 11 +   783054 TTCTTATTTCC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I
e caeSp111.Scaffold412     43772  0 -   118955 C
e caeRem4.Crem_Contig24   681559  0 -  1162296 C

a score=0.000000
s ce10.chrX               952354 21 + 17718866 ATGTAGCAAAATTTGACGTTT
e caePb3.Scfld02_62       175401  0 +   783054 C
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I
e caeSp111.Scaffold412     43772  0 -   118955 C
e caeRem4.Crem_Contig24   681559  0 -  1162296 C

a score=195.000000
s ce10.chrX               952375 17 + 17718866 TAATACTTCAATTCTCT
s caeRem4.Crem_Contig24   681559 11 -  1162296 TAATGCCTCAA------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       175401  0 +   783054 C
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I
e caeSp111.Scaffold412     43772  0 -   118955 C

a score=-2224.000000
s ce10.chrX               952392 67 + 17718866 TCGTATCCCCTAAAAAAAGTTTCAGTAATTTTCATTTTTCTACGCCTCATTTTTTGTACAAAACAAT
s caeRem4.Crem_Contig24   681570 28 -  1162296 --GTACCCACT----------------------------------CCTTTTCATATTAGTCAAC---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43772 31 -   118955 TCAtatccgtt----------------------------------ttcttcttctttatgaAACA--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       175401  0 +   783054 C
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I

a score=0.000000
s ce10.chrX               952459 13 + 17718866 TCATACATAAGTG
e caePb3.Scfld02_62       175401  0 +   783054 C
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339593 13 - 21540570 I
e caeSp111.Scaffold412     43803  0 -   118955 C
e caeRem4.Crem_Contig24   681598  0 -  1162296 C

a score=95013.000000
s ce10.chrX               952472 253 + 17718866 TCCATCTCTATTTTAATATTCAATTCCTCATTCCACAATCTATTTTTGTCCTCTAATCCAATATTTATTTCAGCGAAGGATTTCCAGTCGGACCAGGCGGCACTCTTTCAAAGGTCTTCGCAGTGTGTCCTCTATTGAGCAACAACAAGGACAAGCGAGGGCTCGCATTGGATGGACAACTCAAGCATGAGGACACTAATTTAGCTTCAAGCACAATGT--GAGTA-----TAAA----------------GTCGATAGGAAAGGGAAAGAGAGGG----
s cb4.chrX              21339606 224 - 21540570 ------------------------TGTTCACGTAAc-------ccttgtt-----------tccttttttcagcgaaGGATTCCCAGTCGGGCCGGGAGCTACactttccaaagttttctcTGTCTGCCCTCTTCTCAGTAATAACAAGGATAAAAGAGGACTCGCACTGGATGGACAACTCAAGCATGAGGACACTAATTTAGCTTCAAGCACAATGTAAGAGCA-----GAAGCATTGAGAAACAGcgagtcga---------aaaaaaaacagatga
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig24   681598 215 -  1162296 -------------------------CTTCAC-CAaa-------ttttccc-----------tctttttttcagcgaaGGCTTCCCAGTGGGTCCGGGCGCGACACTTTCGAAGGTTTTTGCCGTGTGTCCTCTTCTGAGTAATAACAAGGACAAGCGAGGACTTGCACTGGACGGGCAACTCAAGCATGAGGACACTAATTTAGCTTCAAGCACAATGT--GAGTA-----GAAA-----------AGAGAGTCGATAAGA---GGAAAGAAGGAGAGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     43803 196 -   118955 ----------------------------CGTCTGA-------------------------------ATTGCAGCGAGGGGTTTCCGGTTGGACCAGGCGCAACTCTCTCCAAAGTCTTCGCTGTGTGCCCTCTTTTAAGTAACAACAAGGACAAGCGAGGTCTCGCACTGGATGGACAACTCAAGCATGAGGATACTAATTTAGCTTCAAGTACAATGT--GAGTG-----AAGA-----------GGAAAGTcgatcaga---gaaaaagagaag----
i caeSp111.Scaffold412  C 0 I 1
s caePb3.Scfld02_62       175401 205 +   783054 --------------------------TCCATTCAA-----------------------------TCTTTTTAGCGAAGGTTTTCCTGTTGGTCCGGGTGCGACTCTCTCCAAGGTCTTCGCAGTTTGTCCCCTTCTGAGTAACAACAAGGACAAACGCGGTCTCGCACTGGACGGGCAACTCAAGCATGAGGACACTAATTTAGCTTCAAGCACAATGT--GAgtagaagcaaaa-----------agaaagtcGATAaga---ggaaagagagag----
i caePb3.Scfld02_62     C 0 I 138
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-2469.000000
s ce10.chrX               952725 66 + 17718866 CGCGCAAA-------CATATATATATATCGGGATGCCGAGAGAAGAAAATGGGGGGAAAGGGAAAAGAGAGGG
s cb4.chrX              21339830 55 - 21540570 ---------------gATGCAAAAGAGGCGACGAGAGGGGGAGAGTTTGTAAGGAAAATGGAGAAGGAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   681813 50 -  1162296 ---------------AATAGATGAGCGCCGCGTTGTGGgggaaaa-----acgggaaaaggagaaggaaa---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     44000 62 -   118955 cgTAGGAAATAGGAAAATATATGAGAAGC------AGCAGCAAACTGcgtgggggggggggggggggg-----
i caeSp111.Scaffold412  I 1 n 1
e caePb3.Scfld02_62       175606 138 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=5129.000000
s ce10.chrX               952791 58 + 17718866 TAAACTTCCGCCATTTCCTTACTCAGAAGGTTCAATTTCCCCCCGTCTCCTTCTACAA
s cb4.chrX              21339885 57 - 21540570 TATGCTTCCG-TGTTTCCCTCCTCAGCAGGTTCAATTCAATTTCTCCCCTTCCTAAAA
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig24   681863 54 -  1162296 tAAACTTCCG-TGTCTC---CCTTGAAAGGTTCAATTCCTTCCCCTTTTTCCCCATCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       175606 138 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     44062  1 -   118955 I

a score=-657.000000
s ce10.chrX               952849 83 + 17718866 ACGA-------ATTTCGCCAG------------------TTCTCCATCTACTTAGAT---ACACTTTTTATGTTAAGCAAAAGAGTTCAGGAGAGTGGGGAACGAATTGAG
s caeRem4.Crem_Contig24   681917 92 -  1162296 ACGACAAACTTATTTCTGCAACTCGATGCCCCCCGTGTCTTCTCCTCCAACTCTCATTCAGCACTCATCATG------AAATGAGATCGAGAAA-------------TGTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       175606 138 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339942 48 - 21540570 I
e caeSp111.Scaffold412     44062  1 -   118955 I

a score=0.000000
s ce10.chrX               952932 604 + 17718866  
e caePb3.Scfld02_62       175606 138 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339942  48 - 21540570 I
e caeSp111.Scaffold412     44062   1 -   118955 I
e caeRem4.Crem_Contig24   682009   0 -  1162296 C

a score=160.000000
s ce10.chrX               953536 16 + 17718866 CAATCAAATAATTAAT
s caePb3.Scfld02_62       175744 14 +   783054 CAATttaat--tcaag
i caePb3.Scfld02_62     I 138 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339942 48 - 21540570 I
e caeSp111.Scaffold412     44062  1 -   118955 I
e caeRem4.Crem_Contig24   682009  0 -  1162296 C

a score=273.000000
s ce10.chrX               953552 1 + 17718866 T
s caeRem4.Crem_Contig24   682009 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       175758 1 +   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21339942 48 - 21540570 I
e caeSp111.Scaffold412     44062 1 -   118955 I

a score=546.000000
s ce10.chrX               953553 1 + 17718866 T
s cb4.chrX              21339990 1 - 21540570 T
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig24   682010 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       175759 1 +   783054 t
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     44062 1 -   118955 I

a score=102225.000000
s ce10.chrX               953554 163 + 17718866 TTTGCAGATTGGACTCTAAAACATCAAAGGAAAGTCTTGGAATTGTAGTTCAATACAGAGTGAAAGTTCGCGCAGTTCTTGGACCACTAAACGGAGAACTGTTCGCCGAGCTGCCGTTCACATTAACACACTCGAAGCCTCCAGAGAGCCCCGAGAGAACGGT
s cb4.chrX              21339991 163 - 21540570 TTTGCAGATTGGACGCCAAAACTTCAAAGGAAAGCTTGGGGATTGTTGTGCAATACAGAGTCAAAGTTCGTGCTGTGTTGGGACCACTGAATGGAGAACTATTTGCTGAACTGCCATTCACTCTCACACACTCCAAACCTCCAGAAACACCAGAAAGAACGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   682011 163 -  1162296 ATTGCAGATTGGATGCAAAAACTTCGAAAGAAAGTTTGGGAATCGTTGTCCAATACCGAGTTAAAGTGCGTGCTGTTTTGGGACCACTCAATGGAGAACTTTTCGCCGAATTGCCGTTCACCTTGACACACTCAAAGCCTCCAGAAAGCCCGGAAAGAACTGT
i caeRem4.Crem_Contig24 C 0 I 710
s caeSp111.Scaffold412     93331 163 +   118955 tttttagaTTGGATTCGAAGACGTCGAAAGAGAGTTTGGGAATCGTTGTTCAGTATAGAGTGAAAGTTCGAGCTGTGCTAGGACCACTCAATGGAGAACTTTTTGCTGAACTTCCATTTACACTTACACATTCTAAACCGCCAGAAAGCCCGGAAAGGACGGt
i caeSp111.Scaffold412  I 19069 C 0
s caePb3.Scfld02_62       175765 163 +   783054 tattcagATTGGACTCAAAGACATCAAAAGAAAGCTTGGGAATCGTCGTTCAGTATCGTGTGAAGGTTCGCGCTGTGTTAGGACCACTCAATGGAGAACTGTTTGCCGAGTTACCCTTCACACTCACACACTCTAAACCACCAGAAAGTCCGGAAAGAACGGT
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-1142.000000
s ce10.chrX               953717 4 + 17718866 AGGT-
s caeRem4.Crem_Contig24   682884 4 -  1162296 -GGAT
i caeRem4.Crem_Contig24 I 710 C 0
s caeSp111.Scaffold412     93494 4 +   118955 tagt-
i caeSp111.Scaffold412  C 0 I 494
s caePb3.Scfld02_62       175928 4 +   783054 Aggg-
i caePb3.Scfld02_62     C 0 I 20
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340154 0 - 21540570 C

a score=-16703.000000
s ce10.chrX               953721  44 + 17718866 TTTAATTTTCAAAATAATTTTTTTAC---------------GAATCAAATTTTG-----------------------------AATCC--------------------------------
s cb4.chrX              21340154  28 - 21540570 -----------------------------------------AAATCATAC---------------------------------TATCTC--ATAT------TTGCA--TTGA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   682888  57 -  1162296 ---------------------TTTAAGTCT-----------CAATTATATTTGGTTAGGCTTAG-----------------AATacctcaaaaac------ttgaaacctAA--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       175952 118 +   783054 TCGAATACGCAAAACCCTTGTCTTGTTTCTATAGAGTAATGAAGTTAGAATTGATAATTCAAAGGAAGTGTATGGCaaaaaaaCATCCTAAACACAGggtttcgaa--ttattttttagc
i caePb3.Scfld02_62     I 20 I 9
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     93498 494 +   118955 I

a score=110560.000000
s ce10.chrX               953765 279 + 17718866 ATATTA----------------TTCAATTTCAGGATCGTGGCCTTCCATCAATCGAAGCAACAAATGGCTCCGAACCAGTCGATATTGATCTCATCCAACTACACGAAGAATTGTAAGT-TT-----------------------------TTGATTAGAGTTGAA----TGATTCAATTTAATACACAATGATT------------------------------TTTCAGAGAGCCCCGCTACGACGACGATCTAATCTTTGAGGATTTTGCCAGAATGCGTCTCCACGGAAACGATAGTGAAGACCAGCCATCGCCAAGCGCCAACTTGCCGCCAAGCCTTCTATGAATC-TGTAC---AA
s cb4.chrX              21340182 299 - 21540570 acatta----------------tttattttcaggagcGTGCTTTCTCGATAAGCGATGCTACTAATGGCTCCGACCCTCAAGATATTGATCTCATTCAACTACACGAAGAACTGTCAGTAATGTTAAACACACGT------------CACGCTCTCCAAACtttaaaatgttgatttttca-----aaatgtcat------------------------------tttcagagaGCTACGGGATGATGACGATCTGATCTTCGAAGATTTTGCTCGCATGCGGTTACACGGAAACGACAGTGAGGATCAGCCGTCACCAAGTGCCAACTTGCCGCCAAGCCTTTTGTGAATA-TGTATTCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   682945 278 -  1162296 TCCATA----------------TTCCATTTCAGGACCGCGGATTGCCATCAACCGAAGCAACAAACGGCTCAGAACCGGTCGACATTGATCTCATTCAGTTGCATGAAGAATTGTGAGT-TTCTCATCCCCGTAT----------------CTGTCTAAATTCTAA----TTGCATTCCC---------------------------------------------TTTCAGAGAGCTACGGGACGACGACGATCTTATATTCGAAGATTTCGCCCGAATGCGTCTCCACGGAAACGATAGTGAAGACCAGCCATCGCCAAGCGCCAATTTGCCGCCAAGTCTCCTATGAATCTTGtat---aa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     93992 270 +   118955 -taatt----------------tataGCTGCAAGATCGCAGTTTGCCATCAACCGAAGCAACAAACGGCTCAAAATCACTCGATGTTGATCTCATTCAATTGCATGACGAACTGTAAGTGCT-------------------------ACTATCATGAAAACATTAA----TGA-------------ACATTTCAC------------------------------TTCCAGAGAACTACGGGATGACGATGaccttatttttgaagacttTGCTAGAATGCGTTTACATGGAAACGATAGTGAAGATCAGCCATCACCCAGCGCAAACTTGCCGCCAAGCCTTCTATAAATC-Tgttt---ga
i caeSp111.Scaffold412  I 494 C 0
s caePb3.Scfld02_62       176079 350 +   783054 -aaatttcacgtttcgctcaaatatattttcaggaacGTGGACTTTCTTTGACCGAAGCAACCAACGGATCGGAATCTCTTGACATTGATCTCATTCAACTGCACGAAGAACTGTAAgagatttttcactttttttcaaataatttgatcACCAAGCAAAca--aa----tcattcttttt--ctcacattACATCTTGAATGTCTATTGTAAATTATTATCAAATTACAGGGAATTGCGGGACGACGACGACCTCATTTTCGAAGACTTCGCCAGGATGCGTCTACACGGAAATGACAGTGAAGACCAGCCATCACCAAGCGCCAACTTGCCGCCAAGCCTTCTATGAATC-TGTAC---AA
i caePb3.Scfld02_62     I 9 I 366
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-1067.000000
s ce10.chrX               954044 58 + 17718866 TTTATCACATGATATTGTGTCA-------------------CTCTGTCATTCAACTT-TTCTACGTCTTTTCCACCTT
s cb4.chrX              21340481 77 - 21540570 ACGATCAAAAACAATTGTAATAGCTTTTCTTTCATCACTGACtttgtaatttatttt-ttctctgtcaTTTCTTTCTT
i cb4.chrX              C 0 I 272
s caeRem4.Crem_Contig24   683223 54 -  1162296 attatcaaaa--------------tgttcatt---------ttctgtcatttctttt-ttcccccacactcctttttt
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold412     94262 48 +   118955 -atatcaaaaacacCCGTAC---------------------ccttgtcattttttttcttccttcacAAA--------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-360.000000
s ce10.chrX               954102 132 + 17718866 TTCCCCATTTTTCATTGTTTCTTTGTAAGTACATCTTTTTGTCTATGCTTCAAGTCAATTTTTCTGTC-AAATTGTCACCTTTTTCGTTTTCTTTCAT------TTCATTTTTT------------CTCA---TATAAATCTATTTTGC--CAATT
s caeRem4.Crem_Contig24   683281 117 -  1162296 ----------------gtcCCCTTA---------CTTTGTA---------AATGTCCTCTTTCCTGtc--attcttctcatctctcGCTGTGCttcaaaaagtgttcattTTCCATTAATTTCTCACTCg---tataaaaatattttgcaACAATT
i caeRem4.Crem_Contig24 I 4 I 159
s caeSp111.Scaffold412     94310 111 +   118955 ------------CATTgtaattata---------ttttttg--------taatgT----TTTCCAGTCGAAATTTTCTGCTTCCTTTCATtactctaaa-----ttttttttct-----cttctatctTGATATATAAATCTATTTGGC--TAATC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340558 272 - 21540570 I

a score=91.000000
s ce10.chrX               954234 1 + 17718866 T
s caeSp111.Scaffold412     94421 1 +   118955 T
i caeSp111.Scaffold412  C 0 I 154
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340558 272 - 21540570 I
e caeRem4.Crem_Contig24   683398 159 -  1162296 I

a score=0.000000
s ce10.chrX               954235 635 + 17718866  
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340558 272 - 21540570 I
e caeSp111.Scaffold412     94422 154 +   118955 I
e caeRem4.Crem_Contig24   683398 159 -  1162296 I

a score=128.000000
s ce10.chrX               954870 5 + 17718866 CTTTA
s caeSp111.Scaffold412     94576 5 +   118955 cttct
i caeSp111.Scaffold412  I 154 C 0
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340558 272 - 21540570 I
e caeRem4.Crem_Contig24   683398 159 -  1162296 I

a score=-351.000000
s ce10.chrX               954875 12 + 17718866 -TTTCCCTTGCCG
s cb4.chrX              21340830 12 - 21540570 TTTTCTGTGTCC-
i cb4.chrX              I 272 C 0
s caeSp111.Scaffold412     94581 10 +   118955 -tttctcccgC--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176429 366 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   683398 159 -  1162296 I

a score=-1107.000000
s ce10.chrX               954887 1 + 17718866 A-
s cb4.chrX              21340842 1 - 21540570 -T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     94591 1 +   118955 A-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       176795 1 +   783054 A-
i caePb3.Scfld02_62     I 366 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   683398 159 -  1162296 I

a score=13025.000000
s ce10.chrX               954888 35 + 17718866 ACGACACTCCGAAATAACTCCCTGCGCGTTGTTTA
s cb4.chrX              21340843 35 - 21540570 ACGACACTCCGTCATAACGCATTGCGCCTTGTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   683557 35 -  1162296 ACAACACTCCAAAATTCCGGACTGCCTATTGTTTA
i caeRem4.Crem_Contig24 I 159 C 0
s caeSp111.Scaffold412     94592 35 +   118955 ACAACACTCCGATATTACACCCCGTGTGGGTTCTA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       176796 35 +   783054 ACGAGACTCCAGGATCCCGCGTCGTGCGCTGTTTA
i caePb3.Scfld02_62     C 0 I 36
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=408.000000
s ce10.chrX               954923 3 + 17718866 TTA
s cb4.chrX              21340878 3 - 21540570 GTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   683592 3 -  1162296 GAA
i caeRem4.Crem_Contig24 C 0 I 27
s caeSp111.Scaffold412     94627 3 +   118955 GTA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176831 36 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-3161.000000
s ce10.chrX               954926 28 + 17718866 --------------GCTGTTATCTACTG-----GAGGAGAAGG------------------------TTCA
s cb4.chrX              21340881 71 - 21540570 ATCTGCGTCTCCTTGTTGTCATACTCTATTTTTGTGGAGAAGAACTGCGTTTTTATTGTGGTGGCCGCTCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     94630 22 +   118955 -----------------------CACTAACCGTGTAAGGAGGA--------------------------CA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176831 36 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   683595 27 -  1162296 I

a score=604.000000
s ce10.chrX               954954 3 + 17718866 TCT
s caeRem4.Crem_Contig24   683622 3 -  1162296 TCT
i caeRem4.Crem_Contig24 I 27 C 0
s caeSp111.Scaffold412     94652 2 +   118955 -CT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       176831 36 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21340952 0 - 21540570 C

a score=119851.000000
s ce10.chrX               954957 384 + 17718866 CGTCAAAACAAACTACTTATTTATTG--GATTTTAGTTA-----------------TGCTGAACAGTCTATTTTTTGTAAATAGTAGTGGGTGAGTGATTTTTGATTTGAAATTATAAAATTTTTTTG-----TATTACTTTTCAA--AATTTCAGTGATGTATTACTTGAAAAGCATTGGAAATCTGTTATTCATCGATCAATTTGCGATTATTTCTTTGATATTCAGAAAAAGGTTAGCTTCTAAATTTTGTTAAATTAAACTGGTCTGACCAAATTCCATACAT------TTTCAGAGCATTCACCCCGAAGATGTGCCTCCAATAATTTCAACTCCACATCATTATTTGATAAACGTATATCAGAACAACTTATTTCTAGTCGCAGTTATCACAGTTGAAAGTGAGTA---------TTTT
s cb4.chrX              21340952 368 - 21540570 ------------------ACTTACTA--ACTACTACTTA---TTTATTTGGCAAAATGCTGAACAGTTTGTTCTTTGTGAACACTAGCGGGTAAGTG--------CAtcttattcaaaaagttctgct-------ACCTTTGTA----CATTTCAGAGATGTGTTACTGGAAAAACATTGGAAATCTGTTATTCACCGCTCTATTTGCGATTATTTCTTCGACATTCAGAAGAAGGTCTGTAGT---------CTGGACTAATTTA---GTACAAAACTCgctatatatt---tttcagagtaatCACTCGGAAGATGTTCCTCCGATCATTTCAACCCCACATCATTATCTGATcaatgtttatcagaataaTCTGTATCTCGTCGCGGTAATCACAATAGAAAGTGAGTTAgagttttgttta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   683625 381 -  1162296 CGTCAAAACAA-CGTtgtatttattattttttctacttAAATTCTACTTAA-ATTATGTTGaacagtttattttttgtaaatactAGTGGGTAagtg--------atttcaattttaagattttgaac-----gaattttcttc----tttttcagtgatGTATTACTTGAAAAACATTGGAAATCGGTTATTCATCGGTCCATTTGcgattattttttcgatattcaaaaaaaggtaaGTAAT----------GAGAATACGCGG---CGACTAAACATGTATTACTTT---TCACAGAGTCACCAACCCGAAGATGTGCCGCCGATAATTTCAACTCCTCATCACTACCTGATAAATGTTTATCAGAATAACTTGTACCTTGTAGCAGTGATAACTGTTGAAAGTAAGCT---------CTTA
i caeRem4.Crem_Contig24 C 0 I 111
s caeSp111.Scaffold412     94654 366 +   118955 CATCAATACGTACTCTGTATTCATTG-----GTTTGCTG--------------TCATGTTGAACAGTCTTTTTGTTGTAAATATTAATGGGTAAGTT----CTGacatatatttttattcaatttatt-----gatttactctc----attttcagtgatGTGTTACTAGAAAAGCATTGGAAATCTGTTATTCATCGTTCAATTTgcgattatttttttgatattcagaagaaagtgaGGAGG---------TTCAAGTGTATCG------TATAATATATTGATTGTT---TTGCAGAGCCATCATCCCGACGATGTCCCACCGATCATTTCAACCCCGCATCATTATTTAATAAATGTATAtcagaataatttatttttagttgCAGTAATAACAGTTGAAAGTAAGtg---------tttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       176867 377 +   783054 CATCAATACAT-CGTTTTATTCAT-------ACTAGCTG-------------ACCATGTTGAACAGTCTGTTTATAGTCAATATCAATGGGTaagtt---------gtttgtttttctgctCTTTGTGCCAAAAATATATCCTCAACTAATTTCAGCGATGTTTTGTTGGAGAAGCACTGGAAGTCCGTGATTCACAGGTCGATAtgcgattatttttttgatgttcaaaaaaaggtaggaatt---------tgtaaaaaaaaagaaacaaaataatatGGAAATTACCTGATTACAGAGTCTCCATCCCGAAGATGTGCCACCAATAATTTCAACTCCTCATCATTATTTGATCAATGTTTATCAAAACAACTTATTTTTGGTGGCTGTTATTACGGTggaaagtaagtt---------tttt
i caePb3.Scfld02_62     I 36 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-12097.000000
s ce10.chrX               955341 49 + 17718866 --------------------------------------TTCGGAAAAAA-----AAATCAAAAACCTGACCACACGATCCTACTTAATTTTT
s cb4.chrX              21341320 18 - 21540570 -------------------------------------ttttcgaaacat-----tgATTG--------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     95020 37 +   118955 c--aatcaaaa-------------------------aatcataaaaaat-----tcatttc-----------------------caattttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       177244 78 +   783054 tcgaattaaagTGAATTTTGCACATCTGAGTGTCACGGTTCTAGGAAATACGGGTCATCTCAA-------CGTATAG-------TAATTCTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   684006 111 -  1162296 I

a score=72078.000000
s ce10.chrX               955390 121 + 17718866 ----TTCCAGCACCTCCCCTCATGGTCATCGAATTTTTACACAGAGTAATTCAAACCTTCACACAATACTTTGATGAATTTTCGGATTCTTCTATGAAAGAAAATTGCGTGATGGTTTTTGAGGT
s cb4.chrX              21341338 121 - 21540570 ----TTCTAGCTCCTCCACTTATGGTCATTGAGTTCTTGCACCGCGTGATTCAGAcgttttctcaatattttgacGAATTCTCGGATTCTACTATAAAAGAAAACTGTGTGATGGTATTCGAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684117 121 -  1162296 ----TTTCAGCTCCTCCATTGATGGTGATTGAGTTTCTGCATCGTGTCATTACAACATTTGCCCAATACTTTGACGAATTCTCCGACTCCTCCATCAAAGAGAATTGTGTGATGGTATTTGAGGT
i caeRem4.Crem_Contig24 I 111 C 0
s caeSp111.Scaffold412     95057 119 +   118955 c------cagcACCTCCTCTAATGGTAATTGAGTTTCTTCATCGCGTAATTCAGACGTTTACTCAATACTTTGATGAATTTTCCGATACTTctataaaagaaaattgcGTGATGGTTTTTGAGGT
i caeSp111.Scaffold412  C 0 I 31
s caePb3.Scfld02_62       177322 125 +   783054 CTACTTTCAGCACCTCCTCTCATGGTAATTGAGTTCCTGCATCGCGTCATTCAAACCTTCACGCAGTATTTCGatgaattttcggattccgccgtgaaagaaaattgtgTCATGGTCTTTGAGGt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-7174.000000
s ce10.chrX               955511 37 + 17718866 GAGCTTTATAACTTCAAAATTGAGGCTTAACATTCCG--------------
s cb4.chrX              21341459 37 - 21540570 --------TTGTTTCTGATTT----ACCAATACTTCG--AGTACTAACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684238 37 -  1162296 --------TTGTCCTCCATTT----CCAAGTACATGGTAAATACTTCTA--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       177447 38 +   783054 -----atgtttttctaaagtt----caactcaatttccaattaccaa----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     95176 31 +   118955 I

a score=174683.000000
s ce10.chrX               955548 313 + 17718866 ATTTCCAGTTGCTCGATGAAATGCTGGACAACGGCTTTCCACTGGTGACGGAAATGAACATCCTTCAAGATTTGATCAAGCCGCCCAACTTTCTGCGCAATATTGCTAATCAGGTCACCGGCCGTACAAACCTTTCTGAAACCCTGCCAACGGGGCAGCTATCAAATATTCCATGGAGGCGACAAGGAGTGAAGTACACAAATAATGAAGCGTATTTTGATGTGATTGAGGAAATTGACGTGATTGTTGATAAGCAAGGATCCACTGTTTTTGCCGAGATTCAGGGATATGTGAGTTTTGAGTATTTGAAACA-----
s cb4.chrX              21341496 296 - 21540570 AGTTCCAGCTTCTTGACGAGATGTTAGACAATGGGTTTCCACTGGTTACGGAAATGAACATTCTCCAAGATCTGATCAAGCCGCCCAATTTTCTCAGAAACATTGCCAATCAGGTTACTGGACGGACAAACTTGTCGGAAACGCTTCCGACAGGACAGCTCTCGAATATTCCATGGAGACGTCAAGGAGTCAAATACACAAACAACGAAGCTTATTTCGACGTGATAGAGGAGATCGACGTTATTGTGGATAAGCAAGGATCAACGGTGTTTGCTGAGATCCAAGGATATGtgagt----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684275 308 -  1162296 --TTCCAGCTTCTTGACGAAATGCTTGACAATGGATTCCCATTAGTGACCGAGATGAATATTCTTCAAGACTTGATCAAACCGCCCAACTTTCTTCGAAATATTGCAAATCAAGTGACTGGCAGGACGAACCTTTCGGAAACACTGCCCACCGGGCAACTATCGAATATTCCATGGAGACGTCAAGGAGTGAAATACACGAATAATGAAGCATACTTTGATGTGATTGAAGAGATTGATGTGATTGTGGACAAACAGGGATCGACGGTTTTCGCAGAGATTCAGGGATATGTAAGT--------ATCGATGTGAAccc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     95207 296 +   118955 ATTTATAGCTGCTCGATGAAATGCTCGACAACGGGTTTCCTCTCGTCACcgaaatgaatattttacAAGACTTAATTAAGCCTCccaattttcttcgaaatatTGCGAATCAGGTGACAGGAAGAACAAACCTGTCGGAAACGTTACCAACTGGCCAGTTATCAAACATTCCTTGGAGACGACAAGGAGTCAAGTACACCAACAATGAGGCGTATTTTGATGTGATCGAGGAAATCGATGTAATATTGGACAAACAAGGCTCCACTATCTTTGCTGAGATTCAAGGCTATGTAAGT----------------------
i caeSp111.Scaffold412  I 31 C 0
s caePb3.Scfld02_62       177485 312 +   783054 attttcagttgttggaCGAAATGCTGGACAACGGATTCCCATTGGTCACAGAGATGAACATCCTTCAAGATTTGATTAAACCTCCAAACTTCTTGAGAAATATAGCAAATCAAGTCACTGGCAGGACCAATCTTTCCGAGACTCTTCCTACAGGCCAGTTGTCTAACATTCCGTGGAGAAGACAAGGAGTGAAGTATACCAACAATGAAGCATACTTTGATGtcattgaagaaattgatgtGATTGTGGATAAGCAGGGATCAACAGTGTTTGCGGAGATTCAGGGATATGTGAGT-TCAAGGGTTTGGGGTA-----
i caePb3.Scfld02_62     C 0 I 243
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-22132.000000
s ce10.chrX               955861 142 + 17718866 AAAAATCAAATTATGCCTTCATATTGAACATACTATTTTGTCCT-------GTTTATTAAAACATTTTTGTAGAACCAGAGGTTTGCGGACCTTTGTAGTAGTATTATATGCCAAAATCTTTTAAACTTCAAAACTTAAAACGTATTTT------
s cb4.chrX              21341792  13 - 21540570 --------------------------------------tggttt-------------------ttttttg-------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684583  72 -  1162296 agaaat-----------------ttaaa---aataggaTGGCCCGAA----CATGaaaaaaaGCTTGTTGA-----------------GA-----------------------AGAAT-------------------AGGCGGTACGAGCTTACC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     95503  68 +   118955 --------------------------------CTAATTTGTCATGAAACCCCATGCTTATGATATTTATGC-----------------GACTCTT------------------AAAACC--------------ACGGAAGCTGTAtttt------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       177797 243 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=1471.000000
s ce10.chrX               956003 14 + 17718866 GCGGAAATAAAGCG
s cb4.chrX              21341805 11 - 21540570 ---gaaatgcaGTG
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig24   684655 14 -  1162296 GCCGGAGTATAGCG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       177797 243 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     95571  0 +   118955 C

a score=-2539.000000
s ce10.chrX               956017 118 + 17718866 ATTATGGCTACTGATAATCTCTATCAATTTGTAATTGTAGTGAATATCGGATTGCAAAATTGTTTAGTTCTGTGCACCTCTAAAGatttaaatacaaaattataaataaaccaaatga
s caeRem4.Crem_Contig24   684669  40 -  1162296 GTTACTCCGGAAATTAACCTCCAC---------attg----------------------ttttccagtttt-----------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       177797 243 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21341816  48 - 21540570 I
e caeSp111.Scaffold412     95571   0 +   118955 C

a score=242.000000
s ce10.chrX               956135 4 + 17718866 aaat
s cb4.chrX              21341864 4 - 21540570 aagt
i cb4.chrX              I 48 C 0
e caePb3.Scfld02_62       177797 243 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     95571 0 +   118955 C
e caeRem4.Crem_Contig24   684709 0 -  1162296 C

a score=-17578.000000
s ce10.chrX               956139 131 + 17718866 attttaataatataataCTTCACACCACCAAATTTGGGTGCTGACGTTTTGAACTAGCATGTGTTCTGGAGGTAAAAATTCTGAAAAATATTTGGAAA-------TATTAAGAATATATTCATCTTATCCTTGACAAA------
s cb4.chrX              21341868  50 - 21540570 ttttgaa------------------------------------------acaaataac-------------------ACTCA------AACCGAGAAATGCAAATTAAAATGACAAT---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684709  39 -  1162296 -ccaccA------------------------------------------ATAAACAAC------------------AATTCC------AACCTACAAA-------TAATATGA-------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       178040 105 +   783054 ACTTCAAT------TTGCTTCATGCC-CCAGGTT----GATTGGAATTTAGAATTAGC------------TATAGGATTTTT------Tatctagaga-------aaaattgactaT---CGGACAGCtcttgaaagatttttt
i caePb3.Scfld02_62     I 243 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     95571   0 +   118955 C

a score=291153.000000
s ce10.chrX               956270 692 + 17718866  
s cb4.chrX              21341918 634 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   684748 640 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 121
s caeSp111.Scaffold412     95571 646 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       178145 590 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=1803.000000
s ce10.chrX               956962 5 + 17718866 TAGCT
s cb4.chrX              21342552 5 - 21540570 GAGTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     96217 5 +   118955 TAGTT
i caeSp111.Scaffold412  C 0 I 27
s caePb3.Scfld02_62       178735 5 +   783054 TAGTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   685388 121 -  1162296 I

a score=-1780.000000
s ce10.chrX               956967 1 + 17718866 --T
s cb4.chrX              21342557 1 - 21540570 -T-
i cb4.chrX              C 0 I 19
s caePb3.Scfld02_62       178740 1 +   783054 G--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     96222 27 +   118955 I
e caeRem4.Crem_Contig24   685388 121 -  1162296 I

a score=273.000000
s ce10.chrX               956968 3 + 17718866 TAT
s caePb3.Scfld02_62       178741 3 +   783054 TAT
i caePb3.Scfld02_62     C 0 I 30
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21342558 19 - 21540570 I
e caeSp111.Scaffold412     96222 27 +   118955 I
e caeRem4.Crem_Contig24   685388 121 -  1162296 I

a score=0.000000
s ce10.chrX               956971 489 + 17718866 CAGCTTGAAGTGAATACCCCTATACTTGCAAAGTAAAAACATGCAAGTTTATAAAAAAACAAATCAAGTAATCAAATTTTTAATATGACTAGGAAAACTCTTGGTAGTGGTCCTAAAAATCGTCAGATATCAATTTGAATGACCAGGAATTATACGGAAAAATCATCCAGGAAATGTAAATTCTTTTTAAAATTATATTTGTCTATCAGCGCTGTGCGGCTGTTTATCCGACTTTTTGGAGAAGTGAGATAGAATTTTAGTGAGATAAAGTTTTAAAATTTGGAAACTTTCATTCTTGCCCAGTCTCACAAAAAGTATATTAGTAGAATTCAGAAATTGTCTATGTTTTTTAAAAACTTGGGTAGAATAATATGACCGTTCGACCGTTCTCCAAGTGATCAACAATCCTGTACCTTATTGGTTGCGGTGTTACCTAACCGACTTTAAAATTTTTTTCTATACATACATTTTAGTTAAAAAAAAGTCATA
e caePb3.Scfld02_62       178744  30 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21342558  19 - 21540570 I
e caeSp111.Scaffold412     96222  27 +   118955 I
e caeRem4.Crem_Contig24   685388 121 -  1162296 I

a score=600.000000
s ce10.chrX               957460 42 + 17718866 TTTTCAAAACTATCTTCAAAATAAGCATGCTGAAAC------GCACAG
s caeRem4.Crem_Contig24   685509 46 -  1162296 ttttcaaaa--atttctagtTTAAGATCGCTGCAACAATGAAGCAAAT
i caeRem4.Crem_Contig24 I 121 C 0
e caePb3.Scfld02_62       178744 30 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21342558 19 - 21540570 I
e caeSp111.Scaffold412     96222 27 +   118955 I

a score=429.000000
s ce10.chrX               957502 6 + 17718866 ---ACATCA
s cb4.chrX              21342577 6 - 21540570 ---atattt
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24   685555 9 -  1162296 AAAATATTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       178744 30 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     96222 27 +   118955 I

a score=726.000000
s ce10.chrX               957508 2 + 17718866 AT
s cb4.chrX              21342583 2 - 21540570 at
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   685564 2 -  1162296 AC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       178774 2 +   783054 AT
i caePb3.Scfld02_62     I 30 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     96222 27 +   118955 I

a score=135475.000000
s ce10.chrX               957510  961 + 17718866  
s cb4.chrX              21342585  924 - 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig24   685566 1121 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     96249  998 +   118955  
i caeSp111.Scaffold412  I 27 I 17
s caePb3.Scfld02_62       178776 1065 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-829.000000
s ce10.chrX               958471 1 + 17718866 T-
s caeRem4.Crem_Contig24   686687 1 -  1162296 -A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       179841 1 +   783054 t-
i caePb3.Scfld02_62     C 0 I 37
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21343509 38 - 21540570 I
e caeSp111.Scaffold412     97247 17 +   118955 I

a score=350.000000
s ce10.chrX               958472 6 + 17718866 CCATTT
s caeRem4.Crem_Contig24   686688 6 -  1162296 ACATTT
i caeRem4.Crem_Contig24 C 0 I 24
e caePb3.Scfld02_62       179842 37 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21343509 38 - 21540570 I
e caeSp111.Scaffold412     97247 17 +   118955 I

a score=0.000000
s ce10.chrX               958478 673 + 17718866  
e caePb3.Scfld02_62       179842  37 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21343509  38 - 21540570 I
e caeSp111.Scaffold412     97247  17 +   118955 I
e caeRem4.Crem_Contig24   686694  24 -  1162296 I

a score=351.000000
s ce10.chrX               959151 5 + 17718866 CCATC
s caeSp111.Scaffold412     97264 5 +   118955 ctatc
i caeSp111.Scaffold412  I 17 C 0
e caePb3.Scfld02_62       179842 37 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21343509 38 - 21540570 I
e caeRem4.Crem_Contig24   686694 24 -  1162296 I

a score=1092.000000
s ce10.chrX               959156 4 + 17718866 ATTT
s caeSp111.Scaffold412     97269 4 +   118955 attt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       179879 4 +   783054 attt
i caePb3.Scfld02_62     I 37 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21343509 38 - 21540570 I
e caeRem4.Crem_Contig24   686694 24 -  1162296 I

a score=87861.000000
s ce10.chrX               959160 181 + 17718866 TTC------CAGAGAAACCAGTTTGAAGGCGCTGTCGTGGAGCTCTACATGCAAGCATTGATCTCTGTGCAGTCTCTAGAAGTAAAGGAGTTTATCATCGAAAGTATACAAGACTTGTCGAGGCAAATGAAAAAGTTGCATATGCAAGTGATTCTAACAGTTCCTGCGCCCCTGGAATGGAATAAGT
s cb4.chrX              21343547 181 - 21540570 ttt------cagaGGAACCAACTCGATGGAGCAGTTGTTGAACTGTATATGCAAGCCTTAATATCTATACAATCTCTACAAATCAAAAGCGTGATCATCGAGAGCTTGCATGATTTAAAGAAatcattcagaaaattgcaCATGCAAGTCATTTACACTGTTCCAGCACCTCTCGAATGGGACAAGT
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   686718 181 -  1162296 TTG------CAGAGAAACCAATTCGAAGGTGCCATCGTGGAAATCTACATGCAAGCCCTAATTTCCGTCCAATCTCTTCAAATTAAGGAATTCGTTATTGAGAGTATGCAAGACTTGTCGAAACAGTTCAAAAAGTTGCACATGGAACTGATTCTCACCGTTCCAGCACCGTTAGAGTGGAATAAGT
i caeRem4.Crem_Contig24 I 24 I 22
s caeSp111.Scaffold412     97273 187 +   118955 ttcatattacAGAGAAACCAATTCGAAGGTGCTGTTGTAGAAATTTTCATGCAAGCTTTAATTGCTGTGCAATCTCTCGAAATTAAAGAGTTTGTTATTGAGAGTATTGGCGATTTGTCGAAGGCAATGAAAAAGTTACACATGGAGATTATCTTGACAGTTCCCGCGCCATTAGAATGGAGCAAGT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       179883 181 +   783054 ttt------cagagaaatcaatTCGAAGGTGCAGTTGTAGAGCTTTTCATGCAAGCAATGATCTCAGTTCAGTCACTGGAAATCAAGGAATTTGTTATTGAAAGTGTTCAGGATTTGTCGAAATCTCTCAAGAAACTTCACATGGAGCTCATTATGACAGTCCCGGCGCCATTGGAGTGGAACAGGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=273.000000
s ce10.chrX               959341 1 + 17718866 A
s cb4.chrX              21343728 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       180064 1 +   783054 A
i caePb3.Scfld02_62     C 0 I 155
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     97460 0 +   118955 C
e caeRem4.Crem_Contig24   686899 22 -  1162296 I

a score=-14322.000000
s ce10.chrX               959342  24 + 17718866 ------------------------------------GAAATAT--------------------------------------------------------TGGTGA-----TAAGAAACTTG-------------------
s cb4.chrX              21343729  31 - 21540570 -------------------GGTTTCT----------GAGCTGT--------------------------------------------------------TGGTca-----ttcaaaacgtt-------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     97460  22 +   118955 ------------------------------------GAGCTAT--------------------------------------------------------TAC--------CTCGTGAcgca------------------a
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       180220 140 +   783054 GTAACGTtggtgaaattgaaatttcctgCGTAACGAGACCCATGGATTGTAGTCTGACAGCGTCTATGTTCCTTTAAAACACCGCTTCTTCATTTGCCATACTCACTATACTTGCAACGCCTTCGCATCTGATTTATGTA
i caePb3.Scfld02_62     I 155 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeRem4.Crem_Contig24   686899  22 -  1162296 I

a score=40280.000000
s ce10.chrX               959366 221 + 17718866 GGAAAA-----------------------------------ATTAACATAT----TTTCAGCCAACCCAACAATCTCGTGACTCCGGATGACTTTAAGAAGATCACAGCTGTTTCCGATTTTGTTCAGGTAAGTGGGAGGAATTTAAGTTGTGTAGTTGAAAACAACACTGTAAGAAACTTCTGTGAGATTGTCAATTTTTC--AGATAATGACCTACGATTACCGGGGAAACAAACCAGCTGGTGTGGCTCCATACGACTG
s cb4.chrX              21343760 134 - 21540570 --------------------------------------------------ttttttttcagccagcCAAACAATTTGATTACACCAGGCGAATACCGCAAACTAACCGATGCTGCAGATTTTGTTC------------------------------------------------------------------------------AAATCATGACGTATGACTACCGTGGTAACAAACCTGCCGGAGTTGCTCCATATGATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   686921 150 -  1162296 GGAAAA----ACAA------------------------------AGAACTGCGTTTTTCAGTCAGCCAAACAACTTGGTTACACCGGACgagttcaaaaaacttacagaaGTCTCCGACTTTGTGC------------------------------------------------------------------------------AGATAATGACTTATGACTATCATGGTAATAAGCCAGCTGGTGTGGCCCCATATGACTG
i caeRem4.Crem_Contig24 I 22 C 0
s caeSp111.Scaffold412     97482 193 +   118955 tgaaaa--------------------------------------aaaacatgtgaTTTCAGCCAACCGAATAATTTGGTTACTCCAgatgagttcaaaaaaatttctgaggTTTCGGATTATGTGCAGGTTAgc--------ttt-----------------------attgaatttttttctgaaattgaaacatttattttaaGATTATGACCTACGACTACCATGGCAACAAGCCGGCTGGAGTTGCTCCCTACGATTG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       180360 236 +   783054 TGAAAACATCACAAAACTCCCACCGAATTCGTCTCACAGTTATTGAAATATTCTATTTCAGTCAACCCAATAACCTGGTTACACCTGACGATTTCAAGAAGTTAACAGAAGTCTCTGATTTTgtgcaagtgagt--------ttt---------------cacCACAACTTGGatgcttttc---aattttatcgaCTTTTTCCAGATCATGACATACGATTATCACGGCAATAAGCCTGCTGGTGTAGCACCTTACGATTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-12390.000000
s ce10.chrX               959587 146 + 17718866 GGTTAGTTTTCAAAAATTTTATTCACTAAAATCCAATTTCTTGGGGTTCTTTAAGAATTCAGCAAGATTCCAGCAAACTTTTGAAAAAAACTAAGAGAGAAACACATTAGTTTCCGTGGAATTCTAAAAAAAATTATCTCATTTCA
s cb4.chrX              21343894  53 - 21540570 GGTTAG-TGCTGA-----TGCGTTAccaaaa-------------------------------------------------ctattaaaaatgaTG---------------TTTCTGT-----------------------CTTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   687071  46 -  1162296 GGTGAGTTGCATA-----TTATttacaaaaa-------------------------------------------------gtttaaaaaatcatg----------------------------------------------tttca
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       180596  46 +   783054 ------------------------------G-------------------------------------------------GTATGATGAACTATGAGCCAATT-------TTTCTGTAGta-tctaa-------------ttttca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     97675   0 +   118955 C

a score=57368.000000
s ce10.chrX               959733 108 + 17718866 GTTTGAGAGCTGTATCTTCTACTTGGGAGGTGGCCACAAAACACTGGCGGGACTCAATTTCTACGGCTATGAGTTCTCCAAAGGCAATGTGGAAGCAATCACTGCGGA
s cb4.chrX              21343947 108 - 21540570 GTTCGAAAGTTGTATTTTCTATTTGGGTGGTGGTACGAAAACACTGGCAGGACTAAACTTCTATGGttacgaattttcgaaaggAAAGGTGGATGCGATCACTTTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   687117 108 -  1162296 gtTCGAGAACTGCGTTTTCTACTTGGGAACTGGTCCGAAAACGCTTGCTGGTCTCAACTACTACGGGTACGAGTTTTCCAAAGGAAAAATGGAAGCCGTCACCTCCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97675 108 +   118955 GTTTGAAAattgtatcttttttctgggaGCTGGTCCAAAAACACTTGCTGGTCTTAACTTTTATGGTTATGAGTTCGGAAACGGAAAAGTGGAACCGATCACTGCTGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       180642 108 +   783054 gtttgaaagcTGTATCTTCTACTTGGGTGGTGGTCCAAAAACTTTGGCTGGTCTGAACTTTTATGGCTATGAATTTGGAAATGGAAAGGTGGAGCCAATAACTGCTGA
i caePb3.Scfld02_62     C 0 I 8
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=2472.000000
s ce10.chrX               959841 5 + 17718866 TAGGT
s cb4.chrX              21344055 5 - 21540570 CAGGT
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig24   687225 5 -  1162296 TAggt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97783 5 +   118955 TAGGT
i caeSp111.Scaffold412  C 0 I 39
e caePb3.Scfld02_62       180750 8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=102.000000
s ce10.chrX               959846 17 + 17718866 GAGAATTAAGAAAGAAA
s caeRem4.Crem_Contig24   687230 12 -  1162296 aa-----acgaaaaaaa
i caeRem4.Crem_Contig24 C 0 I 13
e caePb3.Scfld02_62       180750  8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21344060 41 - 21540570 I
e caeSp111.Scaffold412     97788 39 +   118955 I

a score=0.000000
s ce10.chrX               959863 377 + 17718866 AAAGAGTTGTGCGAAAATGGAAAGTCTTATTATACTGTTGAGCTACATAGAAAAGAAAATAGAACAATGTGGAAGAGATTTGCAAGTTTAACAATTGTTCACTGGGAATTGGGATGGCAAACCGGACGTTCTTTTTTTTTAGTTCAATTTTCTAACTTTTTTTTTCACGTTCCAAATCTTCCAGATTCTGAACAAGGCCACCTTTGTAAAGTTATTGTAAAAATTGTGGAATCCGGAAAATATTTAAAAAAAAACAACTGTAATACAGAAACTGGATTGTCCAAAATTCGGTAAAGCCAAACGTTTGACATAAAATATTGCCAAAGTTCTTAAATCATTTCTTAATTTTATATATTGACAAATCAATAGTTAATTAA
e caePb3.Scfld02_62       180750   8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21344060  41 - 21540570 I
e caeSp111.Scaffold412     97788  39 +   118955 I
e caeRem4.Crem_Contig24   687242  13 -  1162296 I

a score=218.000000
s ce10.chrX               960240 18 + 17718866 ATTACGACAAATTAATTA
s caeRem4.Crem_Contig24   687255 16 -  1162296 ATTATCACAAATCACC--
i caeRem4.Crem_Contig24 I 13 C 0
e caePb3.Scfld02_62       180750  8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21344060 41 - 21540570 I
e caeSp111.Scaffold412     97788 39 +   118955 I

a score=94.000000
s ce10.chrX               960258 5 + 17718866 TCTTT
s cb4.chrX              21344101 5 - 21540570 TTCTT
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig24   687271 4 -  1162296 -ATTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       180750 8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e caeSp111.Scaffold412     97788 39 +   118955 I

a score=3292.000000
s ce10.chrX               960263 8 + 17718866 CAGATACT
s cb4.chrX              21344106 8 - 21540570 CAGGTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   687275 8 -  1162296 CAGATATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     97827 8 +   118955 CAGGTatc
i caeSp111.Scaffold412  I 39 C 0
e caePb3.Scfld02_62       180750 8 +   783054 I
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=68391.000000
s ce10.chrX               960271 283 + 17718866 TGACACTATTGAAATCTGAAAAATCCAAGTTGGAGTTTGACGAAAAGTCAATGGAGCACAGAGTAAAGACCTCTAATTCCATCGCCTATTTCCCATCACTCACCTCGCTGGAACTTCGCATCAATATGGCTCACCGCTACGATGTCGGAATTGCCATTTGGGATTATGGACAGGGACTCGACTATTTCACTAATTTATTGATTTAA------------TG-----TTTCAACTTTTCACATTTTTCAGCCTATTTCATTTGAACA----------TTTTAATCTAT---GGAATTT--------GATATGTA-AATAAGAAG----
s cb4.chrX              21344114 249 - 21540570 TCAAAGTCTTGAAATCTGACAAAACAACACTCTCATTTGACGAGAACTCGATGGAACACAAGCTGAAAACACCAACTTCAGTGATCTACTACCCATCGTTGACTTCTCTCGAATTGCGAATCAATATGGCTCATCGTTACGATGTTGGAATTGCTATTTGGGACTACGGACAGGGGCTGAATCACTTCACGAACCTGCTCATTTGAATTGGA-------------TTTAAAGCTT--------------------------------------------------T--Gtgaataa--------cattttttgaatatgaaa----
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig24   687283 281 -  1162296 TCAAGGTACTCAAATCTGACCAGACCACACTCTCATTTGACGAGACATCAATGGAGCATAAGTTGAAAACCCCAACCTCCGTGATTTACTACCCAACGCTGACTTCTCTCGAGCTCCGCATCAATATGGCCCATCGCTACGAAATGGGAATCGCTATCTGGGACTATGGGCAGGGTCTTGACTACTTCTCAAACCTTTTGATTTAATTCGAA------TGTCTGTTGTAAAATTTGCCTTTT---------------------------------TGTCTATCGGT--ATGAAAGAATGCCGGGTTTatttgtaaaaagaaa----
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold412     97835 304 +   118955 tgaaacttttaaaagagaagaacactAAATTGGACTTCGATATGAAATCAATGGAGCACCGACTAGTAATGCCAAAAGTAGTTGTGTATTTCCCATCCCTAACTTCCCTGGAACTCAGAATCAACATGGCTCACAGATATGAAATTGGCATCGCCATCTGGGATTATGGCCAGGGTTTTGACTATTTTACAAATTTGTTGATTTAAGAC---------TGTTTCTGCTcaaaattgctttttctgACACATATTTCATGCCTCTATACTCAGCAATATCTATTTATTCAtgaaaat--------catatttt-----tgtaAGCAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       180758 308 +   783054 TGAAATTACTCAAATCCGAGAAAGCAAAGTTAGATTTTGACATGAAATCAATGGAACACCGACTCAAGCTGCCATCTACTGTAGTATACTTCCCGTCGCTCACTTCTTTGGAGCTCAGAATCAGTATGACTCACCGTTACGAAATCGGAATCGCTATCTGGGATTATGGACAAGGATTCGACTATTTCACAAATCTTTTGATTTAAATCtttcatatttatttattttcaatactGGGTTTTT---CATATGTTTCACGGAAGCATTCCGGG---TTTCTATTTGT---TGacaat--------ttcatttc-aaggGGAAAGAAT
i caePb3.Scfld02_62     I 8 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I

a score=-5738.000000
s ce10.chrX               960554 11 + 17718866 ACAAA----------------------------------------TATTAT
s caeRem4.Crem_Contig24   687565 13 -  1162296 ------------------------attatcg--------------TCTTGt
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold412     98139 51 +   118955 ATAAGTGTTCCGggtttttctctatttatcgacaatatatttttttatgat
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181066 22 +   783054 AAGAA------------TTCTCAAATGA-----------------TACAGC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138205 2614 -   161274 I
e cb4.chrX              21344363 19 - 21540570 I

a score=76494.000000
s ce10.chrX               960565 202 + 17718866 ACTAAAGA------TTCTTT----CATTTTGACGA-A--AAAAGGGGACA---TAACGCTTGA---------TGATAGTGTT---TGCAATTTTGAT--------ATAAGAAAACA-------TATT------GAAATGCGTCAAGAGGAGAGACCCTCATACAATGAAAGAGCATGCACAATTGAGGGGTCAGCTTTGGCTCCTTCTTTGAATTCTTCCAATGTCAGTTGAGCATCGTTATTCTGGAAAA
s cb4.chrX              21344382 211 - 21540570 atcaaagaTTCTATTTTGTG----TATTTCAG-GA-A--AATAAAGTATA---AAACGTCTTGAAT------TGATAAATGT--Aaggatttttgat--------ataaaaaagtg-------gcgG------GAAGCACATCAAGTGGAGAGACCCTCATACAGTGAAAGAGCGTGGACGATAGAAGGATCTGCCTTCGCGCCCTCTTTGAATTCCTCGAGTGTCAATTGAGCGTCGTTATTCTGCAAAA
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24   687578 214 -  1162296 ---------gctttttcttc----cattttga-gG-AGCGAGAAAACata---aaatcttttgaattctGTATGATACATTTTGAGGGTGATGTGAT--------ATAAacaaaca-------atag----aaaaaggaaatcaagTGGAAAGACCCTCGTACAATGAGAGAGCATGCACAATAGATGGATCTGCTTTGGCTCCCTCCTTGAATTCCTCCAATGTTAGTTGAGCGTCGTTATTCTGCAAAA
i caeRem4.Crem_Contig24 C 0 I 67
s caeSp111.Scaffold412     98190 219 +   118955 --------------tttaaatatttattttga-aata--gcaGAAAAATACATAAATATTTCTGAC------TGATAACTTT---------TCTTATTTAGAGCGATACGAAAACAATTGTGGGGGATAAATAAAATGACATCAAGAGGAAAGACCTTCATATAAAGATAGAGCGTGAACAATTGAGGGATCAGCTTTGGCTCCCTCTTTGAACTCTTCCAAAGTTAACTGAGCATCGTTATTCTGGAAAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181088 162 +   783054 --------------Tttgaa----gatattga-aa-a--gC-GAAGAATA---GAatat----------------------------------------------atgagaaaaaa-------ggga----------gatgTTAAGTGGAAAGACCTTCGTACAAAGAGAGAGCATGTACAATTGAGGGATCGGCTTTGGCTCCTTCTTTGAATTCCTCGAGAGTTAATTGAGCGTCGTTGTTCTGGAAAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    51484 196 +   161274 acaaaaaatt----ttttta----tgaaataa-GG-A--CGTaacaaata---aaatatttat---------tgacaaatt------------------------ataaaaaaaat-------ttaatatgtAGAACAATATTATGTAGAAAGCCCTTCGTATAACGAAAGAGCATGAACAATCGAAGGGTCTGCCTTTGCCCCTTCTTTAAACTCTTCCAATGTCAACTGGGCGTCATTATTCTATTGAA
i caeJap4.Scaffold17495 I 7739 C 0

a score=182.000000
s ce10.chrX               960767 2 + 17718866 AT
s caeJap4.Scaffold17495    51680 2 +   161274 AT
i caeJap4.Scaffold17495 C 0 I 25
e caePb3.Scfld02_62       181250 0 +   783054 C
e cb4.chrX              21344593 0 - 21540570 C
e caeSp111.Scaffold412     98409 0 +   118955 C
e caeRem4.Crem_Contig24   687792 67 -  1162296 I

a score=-5230.000000
s ce10.chrX               960769 40 + 17718866 TTGGAAATTATTTAATGCTCTAAAAATTTTGAAAGTGGAA
s cb4.chrX              21344593 20 - 21540570 ------------------AGTCACAATTCTGCGCTCTG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     98409 32 +   118955 --------AAGGGGATAtgagaaacattttgaaaaaagaa
i caeSp111.Scaffold412  C 0 I 65
s caePb3.Scfld02_62       181250 31 +   783054 --------TACAGAGAATAGTTTAAATTCTAGAGAGAAA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeRem4.Crem_Contig24   687792 67 -  1162296 I

a score=767.000000
s ce10.chrX               960809 6 + 17718866 TTTAGT
s cb4.chrX              21344613 6 - 21540570 TTCAGG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       181281 6 +   783054 TTTggt
i caePb3.Scfld02_62     C 0 I 56
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   687792 67 -  1162296 I

a score=-1530.000000
s ce10.chrX               960815 42 + 17718866 CGATACCACAAATTTGTTACTAAAATCACCAAACAACATTGT
s cb4.chrX              21344619  1 - 21540570 C-----------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       181287 56 +   783054 I
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   687792 67 -  1162296 I

a score=-22009.000000
s ce10.chrX               960857 374 + 17718866  
s cb4.chrX              21344620 214 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   687859 495 -  1162296  
i caeRem4.Crem_Contig24 I 67 I 109
e caePb3.Scfld02_62       181287  56 +   783054 I
e caeJap4.Scaffold17495    51682  25 +   161274 I
e caeSp111.Scaffold412     98441  65 +   118955 I

a score=1085.000000
s ce10.chrX               961231 35 + 17718866 TTTTTTTCGAAAAATTTCCAGAATCTGTTCAGAAA
s cb4.chrX              21344834 30 - 21540570 -----tttgaagctttttcaTAATCTATTATGAAA
i cb4.chrX              C 0 I 47
e caePb3.Scfld02_62       181287 56 +   783054 I
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   688354 109 -  1162296 I

a score=0.000000
s ce10.chrX               961266 70 + 17718866 AAGTTTTTATCGGATTTTTGAGCCAAACTAAAAATCGAAAACCGGAAAACCGAACAACGTAAAATGAAAT
e caePb3.Scfld02_62       181287 56 +   783054 I
e caeJap4.Scaffold17495    51682 25 +   161274 I
e cb4.chrX              21344864 47 - 21540570 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   688354 109 -  1162296 I

a score=150.000000
s ce10.chrX               961336 4 + 17718866 ATTT
s cb4.chrX              21344911 4 - 21540570 ATTA
i cb4.chrX              I 47 C 0
e caePb3.Scfld02_62       181287 56 +   783054 I
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   688354 109 -  1162296 I

a score=-5962.000000
s ce10.chrX               961340 100 + 17718866 ACGGTTTTTGAAAAAT--------AAAAAATCGTCTAGCTGTAGTGTCGCCTGTGCGGAAAATC-----------------GATTGGCCAAATTCCACATTTTTTTCAAT--------AAACTATGAAACCAG------
s cb4.chrX              21344915  86 - 21540570 ACAGT-TTTAAAACAT-AGT--TCAAAGG--------------TAGACACATATGC-------------------------CTGTGATGTGAAttggtattttttcaaat----aaccaaaacaggaaaattg------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   688463 129 -  1162296 ACGGCGTTCGAGATATGAGTTATCAAAGAATCAGC-----ATTCAAACACTTgtacaaaatttcataattgaCTTCTAGTATTTTAGTGTtaa-----attttctcgatttgcGGAACAAAACTGAGAACTGAAACCAG
i caeRem4.Crem_Contig24 I 109 I 34
e caePb3.Scfld02_62       181287  56 +   783054 I
e caeJap4.Scaffold17495    51682  25 +   161274 I
e caeSp111.Scaffold412     98441  65 +   118955 I

a score=217.000000
s ce10.chrX               961440 25 + 17718866 TTTTTCAAAAAAAACTGTGAAAAAA
s cb4.chrX              21345001 21 - 21540570 tatttcattgaattc----aaaaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       181287 56 +   783054 I
e caeJap4.Scaffold17495    51682 25 +   161274 I
e caeSp111.Scaffold412     98441 65 +   118955 I
e caeRem4.Crem_Contig24   688592 34 -  1162296 I

a score=-5542.000000
s ce10.chrX               961465 144 + 17718866 ACGATGGTATTTAGGTTTTTGT--TCAAAATT-----CCCAGTCAAACTTTGGCAAATTAAAAAAATATACAAATAGAAAGTACACTTTT---TTCAAGTGAGTGAAAGCAATTTTTCAC---------ATTGAA----AAAATTCTAAATATCTCGAACCCAAACT
s cb4.chrX              21345022 117 - 21540570 ------atgctgCGCTTGTT-TTCTCAGCACC-----CTCGG---GattaaggaaaaaagaaaaacaagtcTA--------TTTAGCTTTTCATTAGGATAAGTGA-ATAAA----TCAC---------GGTGAAC-CTAAACTCCATTATACCA------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   688626 152 -  1162296 ACGCTGATATGGGGTTAGTTGTTCTCAAAATTGCTAAATGAG---GACTGATTGAAGTTCAGAAACTATCCGA--------TCCCTTTTTGCGCTTACATCAGTTATGGAAA----CCACAAATACTTTGGAGAGCAATAAAGTCCCCGATACCATAAACCCTTCCT
i caeRem4.Crem_Contig24 I 34 C 0
e caePb3.Scfld02_62       181287  56 +   783054 I
e caeJap4.Scaffold17495    51682  25 +   161274 I
e caeSp111.Scaffold412     98441  65 +   118955 I

a score=-99.000000
s ce10.chrX               961609 2 + 17718866 CA
s caeRem4.Crem_Contig24   688778 2 -  1162296 AG
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495    51707 2 +   161274 CA
i caeJap4.Scaffold17495 I 25 C 0
e caePb3.Scfld02_62       181287 56 +   783054 I
e cb4.chrX              21345139 0 - 21540570 C
e caeSp111.Scaffold412     98441 65 +   118955 I

a score=546.000000
s ce10.chrX               961611 1 + 17718866 T
s caeRem4.Crem_Contig24   688780 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       181343 1 +   783054 t
i caePb3.Scfld02_62     I 56 C 0
s caeJap4.Scaffold17495    51709 1 +   161274 T
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21345139 0 - 21540570 C
e caeSp111.Scaffold412     98441 65 +   118955 I

a score=165691.000000
s ce10.chrX               961612 176 + 17718866 ACCTTATCCATCATTCTAAAAATCCGATCAACTCTCTTCTCGGGCGTATTCTCTTCTTCCGGTAACTGTACACTACTTCCCACCATTTTATAAATCGAATCTACAATCGACAGCATTTCATTTCTCGTAATAAATCCATCTTGATCCAAATCATATAACTTGAACGCCCCTGAATC-
s cb4.chrX              21345139 175 - 21540570 ACCTTGTCCATCATTCTAAAAATGCGATCAACTCTTTTTTCCGGCGTGTTCTCTTCTTCAGGAAGCTGTACACTGGTTCCGACCATTTTATAGATGGAGTCTACTATTGACAGCATTTCGTTCCGCGTGATAAACCCATCCTGATCCAAATCGTAAAGTTTGAAGGCCCCTTAAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   688781 175 -  1162296 ACCTTGTCCATCATTCTGAAGATTCGATCTACTCTTTTCTCTGGTGTGTTCTCCTCCTCAGGAAGCTGTACACTGCTTCCGACCATCTTGTAGATTGAGTCAACGATTGACAACATCTCGTTTCTGGTAATAAACCCATCTTGGTCCAAATCGTATAGTTTGAAGGCCCctgaat--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     98506 176 +   118955 ACCTTATccatcattctgaaaatacgATCAACTCTTTTCTCGGGTGTATTCTCCTCTTCAGGAAGTTGCACACTACTTCCAACCATTTTGTAAATTGAATCAACGATTGAAAGCATCTCATTTCGAGTAATAAACCCATCCTGATCCAAGTCGTATAATTTGAACGCCCCTGCAAC-
i caeSp111.Scaffold412  I 65 C 0
s caePb3.Scfld02_62       181344 175 +   783054 acCTTATCCATCATTCTAAAAATGCGATCTACTCTTTTCTCCGGTGTGTTCTCTTCCTCCGGTAACTGTACACTACTTCCGACCATTTTGTAGATTGAATCGACAATCGACAACATTTCGTTTCGGGTTATAAACCCATCCTGGTCTAGGTCGTACAACTTGAATGCCCCtgcaa--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    51710 176 +   161274 ACCTTATCCATCATGCGAAAAATCCGATCTACTCTTTTCTCTGGCGTGTTTTCTTCCTCAGGGAGAGTAACACTTGAGCCAACCATTTTGTAAATTGAATCAACAATAGACAACATTTCGTTTCTTGTTATAAAACCATCCTGGTCCAAATCATATAATCTAAAAGCCCCTAAAA-C
i caeJap4.Scaffold17495 C 0 I 167

a score=126475.000000
s ce10.chrX               961788 286 + 17718866 ---------AT----ATTAATTCTTGTGTTTGGTTCCCAACTTCTATA---------------------------------------------------AATCTTTGCTTACAATGAAGTTTTTCGTCTAGATTTCCACGAGATGTAATGGATAAAGCTCGTATAAACTCATGAAATTCTATAGCACCATCCTG--AAATCATTTTTATGAGCACATCAATCAAACAAATTGGACGGAAGTCATGCCAGGTACCACTCACCTTATTCTCATCAAAAACTTTGAAGACGAATGATGCGAAGTCTGATGGATCACCTTGTGGGAAAAATTGTTTGTAGATTTTTTGAAAGCCCT
s cb4.chrX              21345314 258 - 21540570 ---------------ATGACGATTTA---------------TTATGCT-------TCGTGTCTCC----------------------------------TGTGAGCACTTACAATGAAGTTTCTCATCCAAGTTTCCGCGTGATGTGATTGACAAAGCACGAATGAACTCGTGGAATTCAATGGCtccatcctgaaaaaaatatg-----------------actcAGATGAAATCAGTTACACTC----AGC--CTCACCTTGTTTTCATCAAACACCTTGAAAACAAACGAAGCAAAGTCGGAGGGATCGCCTTGTGGAAAAAATTGcttgtaaattttttggaatccct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   688956 256 -  1162296 ---------------ataaaaaatca---------------ttcaaat-------atGAGG--------------------------------------TGACAGCGCTCACAGTGCAATTTCTCGTCTAGGTTGCCACGTGACGTGATGGAGAGAGCTCGAATGAACTCATGAAATTCTATAGCGCCGTCCTG--GAAAATTTA-----------------GATTGGAAGAGATGAACTTCAGATTGAGAAT--CTTACTTTATTCTCATCAAACACTTTGAAAACGAAAGATGCAAAATCTGATGGGTCACCTTGTGGGAAGAATTGCttgtatattttttggaaGCCCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     98682 253 +   118955 ---------TTTTGCATCAAATAAAG---------------TTCAAGA---------------------------------------------------AGTGATTGCTAACAGTGCAGTTTTTCGTCGAGATTCCCGCGTGATGTTATTGACAGAGCTCGTAtgaattcatgaaattctATGGCGCCATCCTG--AAAATCTTGTC-------CAT-ACACCTCCTAGTAATAAAAATTGCT--------------CACTTTATTCTCGTCAAACACTTTGAATACGAAGGAAGCAAAATCTGAAGGATCTCCTTGAGGGAAGAATTgtttgtaaattttttggaatcccT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181519 256 +   783054 ---------------atcaaaaatagatttt----------ttcaaca---------------------------------------------------acCGAATTCTTACAATGTAGTTTTTCATCTAAGTTTCCGCGTGACGTGATTGATAAAGCTCTGATGAACTCATGAAATTCTATGGCGCCATcctg--caaaaactg-------------attttttcgagTAGTAGATGATATCAATGGAGGG-----TACCTTATTTTCGTCAAAAACCTTGAACACGAACGAAGCAAAGTCTGATGGGTCTCCTTGtgggaaaaattgtttataaaTCTTTTGGAAGCCCT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    52053 323 +   161274 ATAGTAACTGTTTTCATTActtcacagattt----------ttcaagcTTCATACTTTTGTCTCCCCGATATAGCTAATActaatgttaaaaaaaagaacactAGTAATTACAATGTAATTTCTCATCCAAGTTTCCGCGTGATGTTATTGATAAAGCTCGAATAAATTCATGAAATTCTATAGCACCATCCTG--AAAAAtgtagtttgaa------aatgtttttgagcACATGATATTCAGAA-----------TACCTTATTTTCATCGAAAACCTTAAAAACAAATGAAGCAAAATCTGACGGGTCGCcttgtggaaaaaattgtttgtatattttttgaaatccct
i caeJap4.Scaffold17495 I 167 I 35

a score=2105.000000
s ce10.chrX               962074 4 + 17718866 GGAA
s cb4.chrX              21345572 4 - 21540570 GCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   689212 4 -  1162296 GTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     98935 4 +   118955 GAAA
i caeSp111.Scaffold412  C 0 I 131
s caePb3.Scfld02_62       181775 4 +   783054 GAAA
i caePb3.Scfld02_62     C 0 I 125
e caeJap4.Scaffold17495    52376 35 +   161274 I

a score=76.000000
s ce10.chrX               962078 2 + 17718866 GG
s cb4.chrX              21345576 2 - 21540570 AG
i cb4.chrX              C 0 I 75
s caeRem4.Crem_Contig24   689216 2 -  1162296 GA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       181779 125 +   783054 I
e caeJap4.Scaffold17495    52376 35 +   161274 I
e caeSp111.Scaffold412     98939 131 +   118955 I

a score=298.000000
s ce10.chrX               962080 51 + 17718866 AAGCATT-----------AATATGAGTAGTGCATTTTGCTAGTT-----ATGTGGAAGATTTTATGT
s caeRem4.Crem_Contig24   689218 67 -  1162296 ATGAATGAGTTaacttgaaatttgataaattcCAGTTGTTAATTTTACAATGTTAAACGTTTTATGT
i caeRem4.Crem_Contig24 C 0 I 437
e caePb3.Scfld02_62       181779 125 +   783054 I
e caeJap4.Scaffold17495    52376 35 +   161274 I
e cb4.chrX              21345578 75 - 21540570 I
e caeSp111.Scaffold412     98939 131 +   118955 I

a score=0.000000
s ce10.chrX               962131 861 + 17718866  
e caePb3.Scfld02_62       181779 125 +   783054 I
e caeJap4.Scaffold17495    52376  35 +   161274 I
e cb4.chrX              21345578  75 - 21540570 I
e caeSp111.Scaffold412     98939 131 +   118955 I
e caeRem4.Crem_Contig24   689285 437 -  1162296 I

a score=91.000000
s ce10.chrX               962992 1 + 17718866 A
s caeSp111.Scaffold412     99070 1 +   118955 a
i caeSp111.Scaffold412  I 131 C 0
e caePb3.Scfld02_62       181779 125 +   783054 I
e caeJap4.Scaffold17495    52376 35 +   161274 I
e cb4.chrX              21345578 75 - 21540570 I
e caeRem4.Crem_Contig24   689285 437 -  1162296 I

a score=-303.000000
s ce10.chrX               962993 12 + 17718866 ATATGAAAGC---TG
s cb4.chrX              21345653 13 - 21540570 ATATAAATGCCCG--
i cb4.chrX              I 75 C 0
s caeSp111.Scaffold412     99071 10 +   118955 atatgaaaat-----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       181779 125 +   783054 I
e caeJap4.Scaffold17495    52376 35 +   161274 I
e caeRem4.Crem_Contig24   689285 437 -  1162296 I

a score=726.000000
s ce10.chrX               963005 2 + 17718866 AA
s cb4.chrX              21345666 2 - 21540570 AA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412     99081 2 +   118955 ag
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181904 2 +   783054 AA
i caePb3.Scfld02_62     I 125 C 0
e caeJap4.Scaffold17495    52376 35 +   161274 I
e caeRem4.Crem_Contig24   689285 437 -  1162296 I

a score=913.000000
s ce10.chrX               963007  9 + 17718866 AAA---CCACTA
s cb4.chrX              21345668 12 - 21540570 AAATCTTAACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   689722  9 -  1162296 AAA---CAACTG
i caeRem4.Crem_Contig24 I 437 C 0
s caeSp111.Scaffold412     99083  9 +   118955 tgA---TGACTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181906  9 +   783054 GAA---TTACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52376 35 +   161274 I

a score=125899.000000
s ce10.chrX               963016 185 + 17718866 ACCGCTTCTGTTAGCATTCCATTTGGACAATCACGTACAAATCCTTTATACCATTGCTTGATTTCTTTTTCGGTAACTGTAAA----TAATTTGTTCT--ATAATG-------TTGAAAAAAGTAAACT-----CACAATAAGTCTGCTCAGCAAGATCTCTTATTTGAGAAGATTTCAACTTGCTGTTCCCTTTGCCCAT-----TT
s cb4.chrX              21345680 187 - 21540570 ACTGCTTCTGTGAGCATTCCATTAGGACAGTCCCGTACGAATCCCTTGTACCACTGCTTTATTTCTTTTTCGGTAACTaaaaa----aaGAACACTTT--A-AGTT-------TGGAAATGGTCAAATTTGTCATACAATAAGTTTGTTCAGCTAGTTCTCTAATTTGAGAACCCTTTAATTTGCTATTTCCCTTCCCCAT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   689731 191 -  1162296 ACCGCTTCTGTGAGCATCCCATTTGGACAGTCACGTACAAATCCTTTGTACCATTGTTTGATCTCTTTTTCGgtaactgaaaatt--cttattaCCTT--G-AGTT-------TATCAACATTTCAACT-----CACAATATGTCTGCTCAGCCAGGTCTCGGATTTGAGAACCTTTCAATTTGCTGTTTCCTTTACCCATTTTGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412     99092 184 +   118955 ACCGCCTCTGTTAACATTCCATTTGGGCAGTCACGTACAAACCCTTTATACCATTGTTTTATCTCTTTCTCCGTAACTGA-------AAGGCAATTCC--A-AATT---CTCATCACGAAA-ATAAACT-----TACAATACGTTTGTTCAGCAAGTTCACGAATTTGAGAAGACTTCAATTTGCTATTTCCTTTACCCAT-----GT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       181915 202 +   783054 ACCGCTTCTGTGAGCATTCCATTCGGGCAATCACGCACAAACCCTTTGTACCACTGTTTGATTTCTTTCTCGGTaactgaaaaacataaaacaatttctga-aattgaactgatcaaaaaacagaaact-----caCAATAAGTTTGCTCGGCAAGCTCACGTATTTGAGACGACTTCAATTTGCTATTACCTTTCCCCATTTCGAAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    52411 190 +   161274 ACAGCTTCAGTGAGCATTCCATTCGGACAATCACGAACAAATCCTTTGTACCATTGCCTAATTTCCTTCTCGGTAACTGAAACGTTTTAAATTAGAGC--A-AATA---CT--TTTAAAAGTCAGAACA-----CACAATATGTTTGCTCCGCCAAGTCTCGAATATGTGAAGCTTTAAGTTTGCTATTCCCTTTTCCCAT-----TT
i caeJap4.Scaffold17495 I 35 I 2772

a score=-5099.000000
s ce10.chrX               963201 23 + 17718866 CTTCGCAACAATTCTAATAAAAT-----------
s caeRem4.Crem_Contig24   689922 11 -  1162296 TCTCA------------CAGGAT-----------
i caeRem4.Crem_Contig24 C 0 I 24
s caeSp111.Scaffold412     99276 26 +   118955 TGTTGTGGC--------CTGGATTGAAGTAAACC
i caeSp111.Scaffold412  C 0 I 44
s caePb3.Scfld02_62       182117 25 +   783054 CGTCGCTGc--------cagttttgtttgaaac-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21345867  0 - 21540570 C

a score=0.000000
s ce10.chrX               963224 2 + 17718866 AA
e caePb3.Scfld02_62       182142 0 +   783054 C
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21345867 0 - 21540570 C
e caeSp111.Scaffold412     99302 44 +   118955 I
e caeRem4.Crem_Contig24   689933 24 -  1162296 I

a score=-3084.000000
s ce10.chrX               963226 25 + 17718866 --TTTTGA---------TTTGCAACTTGATTCTCTC
s cb4.chrX              21345867  7 - 21540570 -CTTGCGA----------------------------
i cb4.chrX              C 0 I 6
s caePb3.Scfld02_62       182142 32 +   783054 ttttcccAATTGGATAGAATGAAACGCAATTC----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e caeSp111.Scaffold412     99302 44 +   118955 I
e caeRem4.Crem_Contig24   689933 24 -  1162296 I

a score=-1814.000000
s ce10.chrX               963251 14 + 17718866 TTTTTTGTTATCTG-
s cb4.chrX              21345880 13 - 21540570 -TCAGTGGTCGCAA-
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig24   689957 14 -  1162296 -CCTTTGGTGACAAG
i caeRem4.Crem_Contig24 I 24 C 0
s caePb3.Scfld02_62       182174 13 +   783054 -GGTTTGTTCAAGG-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e caeSp111.Scaffold412     99302 44 +   118955 I

a score=-37345.000000
s ce10.chrX               963265 186 + 17718866 AAAATAAAAATAGTAGCAACGTTCAAATACGGAAACTAGACAAAAAAAATAATA-----------TA---------------------------------GT------GAAAGCA------------------GATTGGGGGGTGTGAGAACCAATAAAATG--ACATTAATTGAATAAAAACGATGTGTTTCGGCGGGTTCTCAATGGTATAAAGGGGTAGAGAAGTGG---TAAGAATA----------------------TAAAGAAAACAAAGTGTA----
s cb4.chrX              21345893  95 - 21540570 --AATAATCGGAT-------------------------ACCAGAAGACAAGATG----------------------------------------------GTTT----GAATAAA---------------------------------------------------GCCGACTGAAACAAAATA----------------------------AGAAGCGATGGGCAATTACTCTGAAACTA----------------------TAGAAAA-----------ATT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   689971 238 -  1162296 ACAATAATTGGATTAGAAACGCCAAAAACCAA----TACCCAGAAAAGAAGCTGAAAGA------TAAAAATTAACATCAGGACCATGTTTTTCTCTGAAGTAC----GaaaaaaaTGTAGAGGAAACGATGTAGTCGGGGTG---GAGGGCCGATAGGAAG--GCGTtaattgaatgaaaacattattct--gtttctttcctttttatttATAGGCACAGGGCAGAGGCATGGAGAGTACAACAAT---------------TAGAAAG-----------AGTG
i caeRem4.Crem_Contig24 C 0 I 456
s caeSp111.Scaffold412     99346 169 +   118955 ---aaaaaaaaactcaaagtaTG---AACCGAAACTTATACTGAAAGTACGAAGGgtta------taaaaagaaaaac----------------------gtc-----gcaaaaa--------------------------------aGGGTCAATTGGAAG--GCGttaattgaatgaaaacattatgc----tcatctttctttttgtataggaataaaaggagaaga---ggaaattaa---------------------tgaaaag---------------
i caeSp111.Scaffold412  I 44 I 2
s caePb3.Scfld02_62       182187 214 +   783054 ---AAAGTAAAAttctaaatctgaaaaactcaaacctattgagaaaatgtggcagagaaaaaaattagaaagaaacCC----------------------ATTcccaggaaaaaa--------------------------------gagagctaCTGAGAGAAACGctaattcaatgaaaacattATGCT---TCGGCTTTCTATATATG-GGGTATATTGTTGGAAAG---GGAAATTGAAACAGCTTGAActaaggtttttgaaaaggtcA---TGTA----
i caePb3.Scfld02_62     C 0 I 27
e caeJap4.Scaffold17495    52601 2772 +   161274 I

a score=-43263.000000
s ce10.chrX               963451 234 + 17718866 GGGAGCACAA--------------------TCAACTA--------AACTCCAGGAAAAAAAGAAAACT-------------------------------------AAA-------------TCTTCGAAAATTTACTTAGGTTTTGGAGGATAGGAGGCT--------TGAGTGGAATAC---ATTTTTACCTGG--------------------AATTGAATTTTT---TTTTCAG--TTTCTTGGGTGTTCAAGCAACCGTAAACTGGCAAAGTATTTTAAAATA------------------------GCAGTTGTATTAATATACTCGGCAACTTAAGAACAAATAAATAACATTATATATTTTGAAA-----
s cb4.chrX              21345988 179 - 21540570 ----------------------------------------------------GGCAGCGGAAAATGCT-------------------------------------ATA------------------AAAAGAATAGCAGAGACCGATGGGTAGAATGCGT--------TAATTGAATAAA---GGCATTATTGGC--------------------gctacaattttt-tgtttctcg--tATA-----CACTAAAATGAGCA--------TCGAG-ATAT-------------------------------AAAATTGTGTTATTTCA---ATTGACTTTT-----CGTAATTAATCgtgatagtttttgaga----
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold412     99517 288 +   118955 GGAAG-------------------------GCGATTA--------TATTC--AATCTAGATGAGTTTTGAatcttaaaaaatttcatt------gtaTGATGCAtata-------------ctttcaaaaattttcctgATTTTATCGAGAGAAGAGTGTGAAACCATTATTAGACAGAC-TAAAAATCAT-----------ATCT---------GTTTCATTATGT-AGTTTCCAGCATTTATT--TCTCTC---CCAGCCT-------TCAAG-ATTTCACATGACCACTCTTGAACGAACGTCATCTTAAAATTATCATAAATCAAGCACTGACTGCACTACACCTGTCAAAGAGGATCAGTGTAGAAAAACAA
i caeSp111.Scaffold412  I 2 C 0
s caePb3.Scfld02_62       182428 349 +   783054 GGAagtataaacattttttgggcATGTTCAGTGACTAACTTAATgtactt--gaaaacaaaaaatgcttgtTCTTACAAATTGAAATCAGCAGAGCGTCCTacacacaaaaagaaaaaaactgttcgaaaaattaaaaaagttctaaaaccGAAGAGCCT---ATCAATACTTGACAGAAGTGGACATCATAGGTAGATCCAATCTCACAGAGTGGTTTGGGTGAGTGAAGTTCCGG--TCTATT--TCAGTCAAGAAAGCAT-------TCAAGAATTTTATGGTAGACCTCTT---CGAAGCTCTTC--AAAAATGTGCTAGAACA-----TGATGGCA--AGACTCAGaaaaccgaacaaaaatttacaaaaaa
i caePb3.Scfld02_62     I 27 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e caeRem4.Crem_Contig24   690209 456 -  1162296 I

a score=-2651.000000
s ce10.chrX               963685 41 + 17718866 GCTGTATCAAATTT----TGAT----------ATGCTTTGGTGC------------AATAGG--------------AAAAT
s caeSp111.Scaffold412     99805 81 +   118955 GCTGAATCAAGAATGTTATGACATCTGTATTTGTAGTTTTGCGttaagaaaatttcaaaacgtcATTTTTGCTCGAAAAAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       182777 53 +   783054 accgaa-caaaaat----TCGCTTCTG-----ATAATCTTGAAT------------AGGAAGTGATTTTC------AAGAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346167 19 - 21540570 I
e caeRem4.Crem_Contig24   690209 456 -  1162296 I

a score=-10301.000000
s ce10.chrX               963726 57 + 17718866 AGTTGATA--TCTGAAAGAATAT----------------TGGTCGG--------------TGCAGAATAAAGTGC-----TAAAAATGTTGGTC
s cb4.chrX              21346186 33 - 21540570 AGTTCGAA--TATGA------------------------TAGTTTGTGGTg---------ttaaaaat--------------------------
i cb4.chrX              I 19 C 0
s caeSp111.Scaffold412     99886 93 +   118955 -CTTCGAGAGTCTGAACAATAAAAGGAGTGCTCAAGGAATGATCTGTCGTAGTGACTAGTTCAAAAGCAAGCCATATAAGAAAACACGCGGATT
i caeSp111.Scaffold412  C 0 I 2
s caePb3.Scfld02_62       182830 82 +   783054 -GTTTGAAGGCATGAAAAACTGCACTAGCGTTC------TTGTTCACTTTGAAgctta--tcaataaaaaactac---ggaaaaaatttgagtt
i caePb3.Scfld02_62     C 0 I 49
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e caeRem4.Crem_Contig24   690209 456 -  1162296 I

a score=174.000000
s ce10.chrX               963783 20 + 17718866 AGTGCAAACAAAACATTTTT
s caeSp111.Scaffold412     99981 20 +   118955 catatgaagaaaaaatggtc
i caeSp111.Scaffold412  I 2 C 0
e caePb3.Scfld02_62       182912 49 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346219  0 - 21540570 C
e caeRem4.Crem_Contig24   690209 456 -  1162296 I

a score=-669.000000
s ce10.chrX               963803 4 + 17718866 GCTA--
s caeRem4.Crem_Contig24   690665 4 -  1162296 ACCA--
i caeRem4.Crem_Contig24 I 456 C 0
s caeSp111.Scaffold412    100001 4 +   118955 --tAAA
i caeSp111.Scaffold412  C 0 I 8
e caePb3.Scfld02_62       182912 49 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346219 0 - 21540570 C

a score=-9673.000000
s ce10.chrX               963807 617 + 17718866  
s cb4.chrX              21346219 678 - 21540570  
i cb4.chrX              C 0 I 1082
s caeRem4.Crem_Contig24   690669 693 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    100013 595 +   118955  
i caeSp111.Scaffold412  I 8 C 0
s caePb3.Scfld02_62       182961 621 +   783054  
i caePb3.Scfld02_62     I 49 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I

a score=2664.000000
s ce10.chrX               964424 34 + 17718866 ---ATAAAGGGGGAAAATATCTCACGCACGCGCAAAC---
s caeRem4.Crem_Contig24   691362 29 -  1162296 -CTTCAGAG-------ATATGACACGCACACATATAC---
i caeRem4.Crem_Contig24 C 0 I 761
s caeSp111.Scaffold412    100608 33 +   118955 CTTCTAGAG-------ATATCTCACGCGCACATACCCCAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       183582 31 +   783054 CTTCTAGAG-------ATATCTCACGCACAC--ACCACTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I

a score=1138.000000
s ce10.chrX               964458 13 + 17718866 AGACATATGGTTT
s caeSp111.Scaffold412    100641 13 +   118955 ACACACATGGTTT
i caeSp111.Scaffold412  C 0 I 339
s caePb3.Scfld02_62       183613 11 +   783054 GCACAAATGGT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeRem4.Crem_Contig24   691391 761 -  1162296 I

a score=614.000000
s ce10.chrX               964471 29 + 17718866 TGGAGGACTCTAAAAATAGAGAAAAGATA
s caePb3.Scfld02_62       183624 19 +   783054 ----------taaaggaaggaaaaaaata
i caePb3.Scfld02_62     C 0 I 351
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    100654 339 +   118955 I
e caeRem4.Crem_Contig24   691391 761 -  1162296 I

a score=0.000000
s ce10.chrX               964500 1322 + 17718866  
e caePb3.Scfld02_62       183643  351 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    100654  339 +   118955 I
e caeRem4.Crem_Contig24   691391  761 -  1162296 I

a score=242.000000
s ce10.chrX               965822 4 + 17718866 AAGT
s caePb3.Scfld02_62       183994 4 +   783054 aaat
i caePb3.Scfld02_62     I 351 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    100654 339 +   118955 I
e caeRem4.Crem_Contig24   691391 761 -  1162296 I

a score=645.000000
s ce10.chrX               965826 17 + 17718866 TTTCAGGAAAACCCAGA
s caeSp111.Scaffold412    100993 15 +   118955 Tctcaaagaaa--caaa
i caeSp111.Scaffold412  I 339 C 0
s caePb3.Scfld02_62       183998 14 +   783054 -ttgaaagaaa--tagt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeRem4.Crem_Contig24   691391 761 -  1162296 I

a score=27584.000000
s ce10.chrX               965843 120 + 17718866 TAATTGGGAATGTTTCT----TTCATCAAAAAAGAGCAAATAGATCATGTTTCCACTT-AACGAAATAATGATCCACACAACTTTCGCGCAGATTTCGG--------CGACAGATCATGTTTCTACAAATTAA
s caeRem4.Crem_Contig24   692152 121 -  1162296 TAATTGggaatgtttctttttttcat-caaaaggAGCAAACAGATCAAGTTTCCACTT-AAAGAAATAATGATCCACACAACTTTCACAAAAGATTTCG----------GGGGATCATGTTTCCTCCAAATTG
i caeRem4.Crem_Contig24 I 761 C 0
s caeSp111.Scaffold412    101008 125 +   118955 tgattgaaaaaacgtcg---tttcatcaaaaaagtgcAAGTATATCGTATTTCCACTT-AGAGAAATAATGATCCACATA----CAACGCAGACTCTGGTGCCGAGGTGAAGGATCATGTTTCTTTAGAGTGA
i caeSp111.Scaffold412  C 0 I 88
s caePb3.Scfld02_62       184012 125 +   783054 TAATTGGAAACGCTTCA----TTCAT-GGAAAAGAGCAAATATATCATGTTTCcacttaaaaaaaataatgatccTCACAACTTCCACTGAATCTCTCA---AAAAGTGAGAGATCATGTTTCTACAATGTAA
i caePb3.Scfld02_62     C 0 I 8
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I

a score=1392.000000
s ce10.chrX               965963 5 + 17718866 ACATT
s caeRem4.Crem_Contig24   692273 5 -  1162296 ACATT
i caeRem4.Crem_Contig24 C 0 I 73
s caePb3.Scfld02_62       184145 5 +   783054 ACATT
i caePb3.Scfld02_62     I 8 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101133 88 +   118955 I

a score=731.000000
s ce10.chrX               965968 62 + 17718866 TACAGAAATTCATGATTTTTCACAATACTCGG--TACAAAGTAATAGTTTTTTTATTGATAGAA
s caePb3.Scfld02_62       184150 58 +   783054 ----Gagatta--gattttttttcagactgaacTTTCtaagtaattttttgttttttagttgaa
i caePb3.Scfld02_62     C 0 I 515
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101133 88 +   118955 I
e caeRem4.Crem_Contig24   692278 73 -  1162296 I

a score=0.000000
s ce10.chrX               966030 525 + 17718866  
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101133  88 +   118955 I
e caeRem4.Crem_Contig24   692278  73 -  1162296 I

a score=430.000000
s ce10.chrX               966555 11 + 17718866 TTCAATAAAAA
s caeRem4.Crem_Contig24   692351 11 -  1162296 TTTAAGAAGGA
i caeRem4.Crem_Contig24 I 73 C 0
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101133 88 +   118955 I

a score=13774.000000
s ce10.chrX               966566 173 + 17718866 ---------------ACAACTGTACAACTAGATACCACCAAGCAGTGAATGAAAAATTAGGAAAAAAAGAGCATAATAATGTTAACTGACTAATAATTCATCGAAGACTTCCTATTCCAAGCATTGCAAGAACTCAGAGAGCACAACTTGAAGAAAGAATAA------AAGCTTGCAAAATAAAATGTACAATT
s caeRem4.Crem_Contig24   692362 159 -  1162296 AAACATCTCCAGCAGAAAACTAtacaattgaa-----------aaagaatagaa----cgagaaaaaagagcatAATAATGTTAACTGACTAATAATTCATCAAAGATTTTTTATTCTGAGCTTCTAAATGAG-CTAACAGCACaatgaaaacttgaagaag------aggcttgaaaagt-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    101221 157 +   118955 ---------------ACAACTGTACAATTG------------------GTAAAA----ATAGGAGAAAGAGCAGAATAATGCTTACTGACTAATAATTCATCAGAGATTTCTTATTCTaagcttcgaaaaaagactggaagcacaaaaagaacatagaaaaatttgttgaacatggaaaataaaatgaataatt
i caeSp111.Scaffold412  I 88 I 467
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I

a score=1095.000000
s ce10.chrX               966739 26 + 17718866 TTTG----TAAAACAGAACATGGAAAACAA
s caeRem4.Crem_Contig24   692521 30 -  1162296 tttggagctggaagaaaacaaggaaaacaa
i caeRem4.Crem_Contig24 C 0 I 264
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101378 467 +   118955 I

a score=0.000000
s ce10.chrX               966765 1000 + 17718866  
e caePb3.Scfld02_62       184208  515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeSp111.Scaffold412    101378  467 +   118955 I
e caeRem4.Crem_Contig24   692551  264 -  1162296 I

a score=247.000000
s ce10.chrX               967765 49 + 17718866 AGAGAAATTGAAAACTGCTCTTTGCCTGCTCACACTTAAGCATCAGCAG
s caeSp111.Scaffold412    101845 25 +   118955 aaagaagttgaaaaacgCT-----------------------TCAG-AG
i caeSp111.Scaffold412  I 467 C 0
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I
e caeRem4.Crem_Contig24   692551 264 -  1162296 I

a score=19.000000
s ce10.chrX               967814 7 + 17718866 CACAGAG-
s caeRem4.Crem_Contig24   692815 7 -  1162296 cacagag-
i caeRem4.Crem_Contig24 I 264 C 0
s caeSp111.Scaffold412    101870 8 +   118955 TAAagacg
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       184208 515 +   783054 I
e caeJap4.Scaffold17495    52601 2772 +   161274 I
e cb4.chrX              21346897 1082 - 21540570 I

a score=11455.000000
s ce10.chrX               967821 17 + 17718866 AGAAAAGAAAAGTGAGA
s cb4.chrX              21347979 17 - 21540570 aaaaaagaaaagcgagA
i cb4.chrX              I 1082 C 0
s caeRem4.Crem_Contig24   692822 17 -  1162296 aaaaaggaaaagcgAGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    101878 17 +   118955 agaaaagaaaagcgaGC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       184723 17 +   783054 aaaaggaaaaagcgAGT
i caePb3.Scfld02_62     I 515 C 0
e caeJap4.Scaffold17495    52601 2772 +   161274 I

a score=22727.000000
s ce10.chrX               967838 36 + 17718866 C-G-GAACAAATTATTCATCAGAAGTAAACACGGTTGG
s cb4.chrX              21347996 31 - 21540570 GACAGAACAAATTATTCATCAGAAGTAAACA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   692839 30 -  1162296 G-CGGAACAAATTATTCATCAGAAGTAAACA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    101895 30 +   118955 G-GTGAACAAATTATTCATCAGAAGTAAACA-------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       184740 34 +   783054 A-G-GAACAATTTATTCATCAGGAGTAAACATGGTT--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    55373 36 +   161274 --CAAAACAAATTATTCATTAGGAGTAAACATAGTTAG
i caeJap4.Scaffold17495 I 2772 I 5474

a score=30177.000000
s ce10.chrX               967874  88 + 17718866 AAGGGGGGATAAGTTTCATCTCTTCGGGAGGCGGACATGGATGCTCCCTTCACGC----------------------------------CCGCTTGACCTTTGATTAAAGTGTT-TGGGGTGG
s cb4.chrX              21348027  91 - 21540570 -----TGGATAAGTTTCATCTATTGC-GGGGCACAC---------------ACAC----------ACCCTCTTGCCTTCAACACCGCCAACGCTTGACCTTTGGTTAAAGTGTT-TGAGGTGG
i cb4.chrX              C 0 I 866
s caeRem4.Crem_Contig24   692869  97 -  1162296 -----TGGATAAGTTTCATCTATTGG-GGGACACAC-------CTCCCTCACTGC----------AGCCTCTCGCTTC--ACGCCGCCGCCGCTTGACCTTTGATTAAAGTGTT-TGAGGTGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    101925  95 +   118955 -----CGGATAAGTTTCATCTATTGGAGGGAAACAC-------TTTTCTTCACGCCgttgtcgtcgtcgtcgcg---------------CCGCTTGACCTTTGATTAAAGTGTT-TGAGGTGG
i caeSp111.Scaffold412  C 0 I 528
s caePb3.Scfld02_62       184774 101 +   783054 ----GTGGATAAGTTTCATCTATT---GGGACACAC-------TGCTTCTCCCGCCCTCGTTGTGACTCTCCTGCTTT--------CTACTGCTTGACCTTTGATTAAAGTCTTCTGAGGTGG
i caePb3.Scfld02_62     C 0 I 884
e caeJap4.Scaffold17495    55409 5474 +   161274 I

a score=1147.000000
s ce10.chrX               967962 214 + 17718866 CGGCTCTGCACACGGTCACC------GCTTCCCTTCTTAAGCTGCCCTGCGGATTTAGTATGAACAACAACGACAACAATAGTGGTTT-TAGAGCTGGAGTGTGGCATCGAGAAACACTAAAATCTATGCATACTTTGATGAAAATTCAAGAGCCAGAG-------------------------------------ACTTTTGGTGTTTCG--------------------------ATGGTTCGAGCACTT-------------GAAGAGACTAAACAAAAAATCCCAAATTCTAA
s caeRem4.Crem_Contig24   692966 291 -  1162296 ATGCAA-GAGCAAGGGCAGCTTAAAGACTCGTCGTCGCCATTTTCTTAGCGGATTTAGTATGGAAAACAACGACAACAATCGTGGCTGAGAGAAATGGGGAGGGAAGGCAATGAA----AAAAGCTATgcataattttatgaaaatgaaaatacgGTGGTTTGAATGTGTGGTGTGCTCCactttctaaaatttcaatttttggcgttttgtttcaaaaccgagACTATTTTACACAAGGGTTACAGTAGTGCAactaaaaaaggaaagaaactgaa-agaaactcCCTACCACTGA
i caeRem4.Crem_Contig24 C 0 I 16
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I

a score=0.000000
s ce10.chrX               968176 17 + 17718866 GTTGGGACATGTGAAAG
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I
e caeRem4.Crem_Contig24   693257 16 -  1162296 I

a score=-812.000000
s ce10.chrX               968193 335 + 17718866 TTGAAttaaaggtaaagtatcgtcagtgagaaaa--ttgatt-----atagcca-cttataagttgttaaaactaccaaaca---gtacagtacaacttttcaaaaaa----------ttttaaattgttggg-------attttttATGCAGTGAGCTTCT----------GGTGAAAACTTTGTTTCCACTAATCAAACATT----TGGAATTCGACCAGAAAATGTTTTTGA--AAGGTTTTTTGTGTTTGAACACTTGAAGGGTAAAATTTCACTTTCTTAGAAAATTAGGCAAAATcaaaac-----------tttgccagaaattttagaaaaattcaaat----aatttttattttttaatcatggtatttggtcac-------------ttcTTATAGG
s caeRem4.Crem_Contig24   693273 384 -  1162296 TCTAGTAAAAAGTCCCACactgagaaagagaaaaagttgattcaCGTGTTGCCAGCCTACA---TTCCAATTCTAGCAAAGACTGGCGCAGTGTGGCATTATGAAGAAACATCGAAGTTTTTGAATCACGGGGCATGTAGATTATCCGGAATGTGAGCTTATTCGAAGTATAAACGGAAAATGTA-----GATGAAGAAATATTGGAGTGGATTTC----------TATTTATAACAAGGATTTATTGAGTGTGATCggttgaaatttggaaaagaacGT-----GAAAGTTATCAAATACAGAAACCGAAAAACACGTTCCCAAGTAGTCTCCGAATTAGTCAATTGAGAAAACttcatttgaaaatcagaGCATTTGAAAACAGAACGGTGGAGTTCCTTAAAAG
i caeRem4.Crem_Contig24 I 16 I 53
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I

a score=0.000000
s ce10.chrX               968528 76 + 17718866 ATTACATTTTCGAGTGTCATCTAAAGTTATGACATCCCGTGATGTAAGGCGGGAACGCTTGAAGCCGAGTCCCCTT
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I
e caeRem4.Crem_Contig24   693657 53 -  1162296 I

a score=-191.000000
s ce10.chrX               968604 329 + 17718866 TTTCAGACCTAGTTATCATTAAATTTGTGTTTCCA---------TTTTGATAAT--TTCTAAGTTTT---AGTTCCAGAA---AAATA------------AATTAATTTGTTACATATACC-------------TCTTAACAAAATGCGCTCAAAAAGGG----------------TTTGAATTGAAAATAAA---TTAATCGCACTAAAAAAAA---GAAACAAGGAATGCTTGGTAAACGTGCCAAAAATC---------CACATGCTCTCGTTTTTCTCACATTGCTCATTTTTCTCCCGCCAGCCTGAATCCGTGAGAATCTTAATCCGTAAAATGTAATTTTGCTCTACTAGTTAAAAAATT----ATGGAAATTCATTGGTTGATTGTAATTACGAAAAT
s caeRem4.Crem_Contig24   693710 374 -  1162296 CTTCAGAGATATCCGTCA--AAAACCGGGTTCTTAAAAAATGACGTTTAATAATAATTCTGATTTCTCACAATCTCAGAATCGAAATCTGCGACATCTCTAACCAAtacgtttcaaaaaacacaacacAAGCAGTTTGATCAGGATGACATCAGAGATGaagacattttcaaatattttaagtGAGATATAACCGCttaatc-caaaaaataaaactggaGACAACAAAATCGAGACAAACTAGTGAATAGATACTCCCTAACCCATG-TCTCCTAATTCCCACATTTCTCATCTTCtgcact----------tttttaaaaatc----------aattgcacttttactctatt--taaaaaaattttatacgGAAAGACa------aattaaaatattgaaaac
i caeRem4.Crem_Contig24 I 53 I 78
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I

a score=0.000000
s ce10.chrX               968933 50 + 17718866 CTGAAGTTGGGCTTGAGACTTTTTTTTTGAATTTTTAAATTCTTGCATAA
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I
e caeRem4.Crem_Contig24   694084 78 -  1162296 I

a score=-1657.000000
s ce10.chrX               968983 260 + 17718866 CCATGAAGTCATCTCGTTGTCATG--GAGATACCACGAAATG-------GGCTCTTTTTTGTGCAATATAATAACAAAAGTCACAAGACAGAA---GTTGAATGGAAAATTATT-ATTTGGTTGAGACAAAAGTGTGTACG---------------------------GGGAAAAAGACGTAGGGA------GACGCAAAAAAGACAAAATCCAAATTAAAAATTCAAT------------------AAAAT---TACAAAGATCA---CACATTTCGAAAAAATTT---ACAAA--------------TTGTTTCAATTCAGAGCAACTATCA------------GCGCTCTTTATCC
s caeRem4.Crem_Contig24   694162 356 -  1162296 TCAACAAGTCATCGTGGTGTTTTGATGAGAAGCGAGGCAATATTCAAATAGAACCGACCGGAGaaatatgaaagaaaatgTAAGTAAGCaaaaaaaGTGGTTTGATTCATTACTCATCCGGTTGCCATAGAAATATCTCCGTTTGCTCTTTTATTCCTATTGCTTAGCGGACAAAAGATAGAGGAGACTCAGGACAGGAAATaggagaaatagaaaagaggactttatttttagaaacgaGGAAggaaaaatacataaaaagaGCAAAACACAT---GAAAAGATATGATACAAAAGTTGCACGAGAATGTGTATTAAATCAAAACGTATAGCACAGTTGAGGAAGTCAATCATCTTGA
i caeRem4.Crem_Contig24 I 78 C 0
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21348118 866 - 21540570 I
e caeSp111.Scaffold412    102020 528 +   118955 I

a score=2679.000000
s ce10.chrX               969243 12 + 17718866 TCCATTCCGAAC---
s cb4.chrX              21348984 12 - 21540570 TCCATTCCCAGT---
i cb4.chrX              I 866 C 0
s caeRem4.Crem_Contig24   694518 12 -  1162296 TCCATTCCAAGT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    102548 15 +   118955 TTCATTCCAAAAGGT
i caeSp111.Scaffold412  I 528 C 0
e caePb3.Scfld02_62       184875 884 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I

a score=84502.000000
s ce10.chrX               969255 128 + 17718866 TTTCGAACTCCGAGAGCCATGCCTCCGAACAGATTGAAATCATCATTCTCTGTGTTTTTTGATGGAATCAATTCTTTGAGGCGCTCCGAGTTGCCATGTGTTATTGCGATGACGGATGTTCCTAAAAA
s cb4.chrX              21348996 128 - 21540570 TTTTGCACACCGAGCGCCATCCCTCCAAACATATTGAAATCATCATTCTCCGAGTTTTTCAATGGAACCAACTCTTTGAGACTCTCAGAATTTCCATGTGTTATTGCAATAACGGATGTTCCTAGAAA
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig24   694530 124 -  1162296 TTTCGAACTCCGAGAGCCATTCCACCAAACATATTGAAATCATCATTCTCGCTGTTTTTTAATGGGATCAATTCTTTGAGACGCTCAGAGTTGCCATGTGTTATTGCAATGACGGATGttcctg----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    102563 128 +   118955 TTCCGAGTTCCTAAAGCCGATCCTCCGAACATATTGAAATCATCATTCTCAgtgttttttgatggaataAATTCTTTGAGTCGCTCAGAGTTGCCATGTGTTATTGCAATGACGGATGTTCctgaaga
i caeSp111.Scaffold412  C 0 I 2
s caePb3.Scfld02_62       185759 128 +   783054 TTGTGAGATCCAAGAGCCATTCCTCCAAACATGCTGAAATCGTCACTCtctgtgttttttgaagggatCAGCTCTTTTAGCCTCTCAGAGTTGCCATGTGTTATTGCAATGACGGACGTTCCTGAAAA
i caePb3.Scfld02_62     I 884 I 213
e caeJap4.Scaffold17495    55409 5474 +   161274 I

a score=0.000000
s ce10.chrX               969383 1 + 17718866 C
e caePb3.Scfld02_62       185887 213 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349124 55 - 21540570 I
e caeSp111.Scaffold412    102691 2 +   118955 I
e caeRem4.Crem_Contig24   694654 0 -  1162296 C

a score=-1671.000000
s ce10.chrX               969384 15 + 17718866 TCATTTAAAAACTCA------
s caeRem4.Crem_Contig24   694654 10 -  1162296 -----caaaaattga------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    102693 15 +   118955 ------acattttggaaCACA
i caeSp111.Scaffold412  I 2 I 106
e caePb3.Scfld02_62       185887 213 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349124 55 - 21540570 I

a score=523.000000
s ce10.chrX               969399 8 + 17718866 ATTTTTTG
s caeRem4.Crem_Contig24   694664 8 -  1162296 atttattg
i caeRem4.Crem_Contig24 C 0 I 94
e caePb3.Scfld02_62       185887 213 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349124 55 - 21540570 I
e caeSp111.Scaffold412    102708 106 +   118955 I

a score=0.000000
s ce10.chrX               969407 618 + 17718866  
e caePb3.Scfld02_62       185887 213 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349124  55 - 21540570 I
e caeSp111.Scaffold412    102708 106 +   118955 I
e caeRem4.Crem_Contig24   694672  94 -  1162296 I

a score=546.000000
s ce10.chrX               970025 2 + 17718866 TT
s cb4.chrX              21349179 2 - 21540570 TT
i cb4.chrX              I 55 C 0
s caeSp111.Scaffold412    102814 2 +   118955 TT
i caeSp111.Scaffold412  I 106 C 0
e caePb3.Scfld02_62       185887 213 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e caeRem4.Crem_Contig24   694672 94 -  1162296 I

a score=-310.000000
s ce10.chrX               970027 1 + 17718866 A
s cb4.chrX              21349181 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    102816 1 +   118955 T
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186100 1 +   783054 A
i caePb3.Scfld02_62     I 213 C 0
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e caeRem4.Crem_Contig24   694672 94 -  1162296 I

a score=44312.000000
s ce10.chrX               970028 372 + 17718866 AACGTACCATTAATACTTCCTAGCGAAGTCTCTTCAATGGGAAA----AGCCTGCGATTGGAT---AGCCAAAATTACGATAAAAACTACAGA-------GATAAGTTT------GAAGT---------AGTAGTCCA-TTGTTCAAGTTGAAGTCAAGTGATAAATCACACTAAAAAGGTTTTTCGAAGGTGTTTCGCTTTAAGGTTTTGTTTCTCTTGACGAATGATATCAAGA---ATTTTTGTTGTCTTGGTCAG-----CCAGTCACGCACC------------ACCTAACACTAC--AATTCACTGACAGTATAAACGAAACGGCGCCAGTTTGGTT---AGCAAATTAGCGCATA----TATC--TGTTATT-CACTATTGGCAAAGG-ACACACACTA-TTTTTGGGTGTGTTTGGGTTTTCAAAACG
s cb4.chrX              21349182 336 - 21540570 AACGTACCGTTTATAGTTCCCAACGATGTGTGTTCTACaggaaa----actatgaaaaacacT---AGCCAAAAATAACAAGGAATACATGAC-------AACcaatac------aaagttt---tgatgGTGCATCA-GTTTTCGAATCGTAatgaaac---------------------------------ttcaattttgaagtttgtct--CTTTAACTaatgatatcagaa---atcaTCG-----CTGGTCAG-----TCAGTCACGCACGACG---------TACCGACACACTACGCCTTTTT--TAGTATAAACGAAACGGCGCCAGTTTGGTT---AACCAATTAGCG---A----GATC--TCTTTTT-TAATACTGTCAAAGG-ACAccaacaattttttgagagtgcT--GTTTTTAGAACC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   694766 361 -  1162296 AACTTACCGTTGATGGTCCCTAGCGATGTTTCCTCTATTGGAAAGCTTACTGTAGTCGAGACT-------AAGAATAGAAGAGAGAATACGAG-------AACCAAAACCCACAAGAAATTCACATGACGGTACACCA-TCGTTCAGGTTGAAATGAAACACtaaa------------------------gtttttagttttgagGTTTCGTT--TCTCGCTGACTGATATCAAGA---ATCATCG-----CTAGGGAGGGCCTCCTGTCACGCACT-CG---------CATCGACACTACA-ATCTTTCT--CAATATAAACGAAACGGCGCCAGTTTGGTT---AACCAATTAGTG---AGTGTGATC--TGTTTTT-CACTACTGGCAAAGG-ACACACACTA-TTTTTGGGTGTGTT--GGTTTTAAAAACG
i caeRem4.Crem_Contig24 I 94 I 84
s caeSp111.Scaffold412    102817 298 +   118955 GACTCACCATTAATAGTACCCAATGAGGT---TTCAActggaaa----acattttatttgaat-------aataaaatacaagaaaataACGC-------------TAC------AAAAT-----AAATAGCGCATCGCTTTTTCAagtttgaaaccaaa--------------------------------aataggTTTCTAGATTTTGTT--TCTTAATGAACGATATTGAGAATCATCATCG-----TTGGCC-G-----TCAATCACGCAC-------------CGCCGACGCTAC--AGTTTCT--------------AAACGGCGCCAGTTTGGTTCAAGACAAATTAGTG---A----GATCTGTGTTTTTCCGGTATTCTCAAAAGGACGCACACTA-TTTTTGGTGTT------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186101 337 +   783054 AACAAACCATTAATACTTCCTAAAGGCATATCTTCAACTGGAAA----ACAATTCGACTGAATAGAAAACAGTAATACACAGAAGAATAAAATCCAATGAGACAAGTTC------GAAAA-----AGACAGCA------TTTTCCAAGTTGAAGACCGAA-------------------------------TTGTGAAGTTTAAGGTTTTCTG--TCTTGATGAATGATATCAAAA---ATAATAG-----TAGGCTAG-----GTAGTCACGCACC-CTCGTACCTGACAGCGACACTAC--GTTTTTCT--AAATATAAATGAAACGGCGCCAGTTTGGTT---AACCAATTAGTG---A----GGTTTATGTTTTT-CGCTATTCTCAAAGG-----ACACTA-TTGCGcgtattgaa--aattt--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    55409 5474 +   161274 I

a score=-714.000000
s ce10.chrX               970400 25 + 17718866 ACACGGTTTTGAAATGATAAATTCA
s cb4.chrX              21349518 25 - 21540570 ATTCAAGTTGATGAAAATAAAATCA
i cb4.chrX              C 0 I 983
s caePb3.Scfld02_62       186438 15 +   783054 ------tctcagaaagaCCAA----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e caeSp111.Scaffold412    103115  0 +   118955 C
e caeRem4.Crem_Contig24   695127 84 -  1162296 I

a score=-2043.000000
s ce10.chrX               970425 79 + 17718866 CGTATAGGAAATATTTTTGAAAAAGTGTTTCTTTGTAAATGCCTCTGGTAAATTCGGTTGATCAAAA-AGCTTCCAAACA
s caeSp111.Scaffold412    103115 40 +   118955 ----------------------AGGTGT----------ATG-----TGTAggtttg---aaagaaaataatgacCAATCA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186453 45 +   783054 ----------------TTGAACAGGAGG----------AAG-----GGAAACTTCC---GATCAAAA-AACTCGCAATCA
i caePb3.Scfld02_62     C 0 I 100
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695127 84 -  1162296 I

a score=-34.000000
s ce10.chrX               970504 45 + 17718866 TGCTTCAACTTACTCAAAAGCCAAGCGGTAGGCCTCTCCACGGCT
s caeSp111.Scaffold412    103155 25 +   118955 AACT-----------AAAAGACAATCG---------TCCACagtt
i caeSp111.Scaffold412  C 0 I 15
e caePb3.Scfld02_62       186498 100 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695127 84 -  1162296 I

a score=0.000000
s ce10.chrX               970549 48 + 17718866 TAACAGCGGCTGAGCCAATAGGGAGACCGTTAGTGGTGGCACTGTACA
e caePb3.Scfld02_62       186498 100 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeSp111.Scaffold412    103180 15 +   118955 I
e caeRem4.Crem_Contig24   695127 84 -  1162296 I

a score=100.000000
s ce10.chrX               970597 1 + 17718866 C
s caeRem4.Crem_Contig24   695211 1 -  1162296 c
i caeRem4.Crem_Contig24 I 84 C 0
e caePb3.Scfld02_62       186498 100 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeSp111.Scaffold412    103180 15 +   118955 I

a score=354.000000
s ce10.chrX               970598 15 + 17718866 AGTACATATTCATTT
s caeRem4.Crem_Contig24   695212 15 -  1162296 aaagCATATTTATTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    103195 12 +   118955 AGTACAAATTAG---
i caeSp111.Scaffold412  I 15 C 0
e caePb3.Scfld02_62       186498 100 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I

a score=13016.000000
s ce10.chrX               970613 166 + 17718866 TAAAAAAAGCA---ATTTCA-TAAAGAAGCTCAATATATCACAAGAAAAGATGACAATTCAAT------------TAAATCAATAAATAGACTCTGCGAGAAGTTTTGAAACTTTTG----AGATATTCAGTGAACAGCTCCCGTATTTTTGTCGACGTTGGCAAACTCTTCGAGGAATCTGTAAA
s caeRem4.Crem_Contig24   695227 151 -  1162296 ---ACAGGCGAGAGAATTCA-AAATGACGTTTGGAATATCACA-TTTTGGATGGCAATATAATAAATAAGAATAGCAAATTAATAAATA-----------------------GCGAG----GATCAATCA---AATAGCTCCCGTAGATCTGTCAAGGTTGGTGAATTCGTccaggaatctgaaaa
i caeRem4.Crem_Contig24 C 0 I 674
s caeSp111.Scaffold412    103207 144 +   118955 -AAAATGGGCAACCAATTCATGACAGAAGCTCTATGTATCACa-ataaaaatggcaaaataaa-----------tgaaataagttaagt-----------------------ttaaatcataaaaagtca---aaCAGCTTTTGTAGACTTGT---AATTGGTGAATTCGtcaagaaatctgaaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186598 132 +   783054 TAGAATGAACAAATAATTTA------------AATATATCACAGAGAGAAATGACGAGATGAG------------AAAATTAATGGAGG-----------------------CTATG----GAATATTCA---AATAGTTCCCGTAGATCTGTTGAGACTGGCAAACTCTTCGAGGAACCTGGAAA
i caePb3.Scfld02_62     I 100 C 0
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I

a score=-5523.000000
s ce10.chrX               970779 50 + 17718866 TT---TAACTTAT-------------------TTTCCATTCACTACAGAACCATAACAAATGCAATAGCCAA
s caeSp111.Scaffold412    103351  9 +   118955 aa----tacttaT-----------------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186730 72 +   783054 CAACGTTTTTTATAGTTTGTTTGGATGGTTTTCACAAATATTCTAAATTCCCACAAAACataaaagagcaaa
i caePb3.Scfld02_62     C 0 I 53
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695378 674 -  1162296 I

a score=-912.000000
s ce10.chrX               970829 40 + 17718866 TTGAAATTAGTATTATAGCATTAAGTATACCCATTAATCG
s caeSp111.Scaffold412    103360  4 +   118955 ------------------------------------ATCT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       186802 53 +   783054 I
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695378 674 -  1162296 I

a score=-16202.000000
s ce10.chrX               970869  70 + 17718866 --------------------------------------------------------------------------------------AAAAAC-------------GACAGAATTACTGCTTAATGTCTGCCCGCTTAGCCAAAACATT-------------------------TTTTACCGGGGA-------------------------------------------------CGTGGTT--------------------------TC
s caeSp111.Scaffold412    103364  21 +   118955 --------------------------------------------------------------------------------------CGAAAC-------------GATGAAAA-------------------------------------------------------------------------------------------------------------------------TATGAGT----------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       186855 261 +   783054 aaaaatgataagaagcTCCACGACACTTCGTAATTTACaacttcgaaactgtgacgtttcgcaactctgaaattctgaagtttGCTCGAAACCGTGTTCGGCgcgaatgaaaat--ttttgaatttctg------ttaCCAAAACCTTCCCGTTTCCTCTTGTTCGCTATGAATTCTAACCGGGACCCATGATAAcaggtttcagaatgtcagagTTGCGATAAGTTTCGAAGTTATGAATTGCGAAATGACGAGGAGAATTATAAATA
i caePb3.Scfld02_62     I 53 C 0
e caeJap4.Scaffold17495    55409 5474 +   161274 I
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695378 674 -  1162296 I

a score=-3273.000000
s ce10.chrX               970939 14 + 17718866 ATTTTAAAGCCTG--T-----
s caeSp111.Scaffold412    103385  1 +   118955 ---------------A-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187116 16 +   783054 ACTTtgtaactaaaaa-----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    60883 21 +   161274 ATTCTAAAATATGCAATCAAT
i caeJap4.Scaffold17495 I 5474 C 0
e cb4.chrX              21349543 983 - 21540570 I
e caeRem4.Crem_Contig24   695378 674 -  1162296 I

a score=52.000000
s ce10.chrX               970953 2 + 17718866 AT
s cb4.chrX              21350526 1 - 21540570 -a
i cb4.chrX              I 983 I 1
s caeSp111.Scaffold412    103386 2 +   118955 AA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187132 2 +   783054 aa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    60904 2 +   161274 AT
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   695378 674 -  1162296 I

a score=119633.000000
s ce10.chrX               970955 162 + 17718866 ACTCACGATTTTGTATTTAGCATGCTACTCCCAGCTAGAACAACAGCAGGCCCTCCGTATCCTTGCATCCGCTTTTCATTCAAGCTTCTCACATAAGCCGCCTCCTCATATGTGGCTCCACCCACAATAAACACAATAATATTATCCATTCGGTCGCTGAAA
s cb4.chrX              21350528 162 - 21540570 actTACGATTTTGTGTTCAGCATGCAATTTCCGGCGAGAACTACAGCCGGGCCACCAAACCCTTGATCTCTTTTTTCGTTGAGGTTTCTGACGAACGCCGCTTCTTCATAAGTTGCTCCTCCAACGATAAATACTATGATATTGTCGTTGCGATCACtgata
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   696052 162 -  1162296 ACTCACGATTTAGTATTCAGCATACAATTTCCAGCAAGAACCACAGCTGGACCTCCGAAACCTTGCGCTCTCCGCTCGTTGAGACTTCTCACAAACGCCGCTTCCTCATAAGTAGCACCTCCAACAATGAACAGAATGATGTTGTCCATGCGATCGCTGAAA
i caeRem4.Crem_Contig24 I 674 C 0
s caeSp111.Scaffold412    103388 162 +   118955 ACATACGATTCAGTGTTCAACATGCAGTTTCCAGCAAGAATAACTGCTGGACCACCCATTCCTtgtgctcttttttcattcagagaTCGAACAAATGCCGCTTCTTCATAGGTGACACCACCAACAATAAATATAATGATATTTTCGACCCGATcactgaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187134 162 +   783054 actgacgcTTTTGTATTCAACATGGTATTTCCAGCAAGAATAACAGCAGGTCCTCCATATCCCTGTGATCTTCTGTCATTCAAATTTCTAACGAATGCAGCCTCTTCGTAAGTAGCACCTCCAACAACGAATACAATGATGTTGTCGACACGATCGctgaag
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    60906 162 +   161274 GCTTACTGTTTCGTGTTCAACATGCAGTTTCCAGCAAGAATGATGGAAGGTCCTCCATGCCCTTGTAATCTCCGCTGGTTCGAGTTTCTGACAAAAGCCGCCTCCTCGTATGTTGCACCACCCACAATGAATACAATCAAGTTATTCATTTTGACACTGAAA
i caeJap4.Scaffold17495 C 0 I 2534

a score=-6140.000000
s ce10.chrX               971117  7 + 17718866 A---TTGAGT--------
s cb4.chrX              21350690  7 - 21540570 a---atgttt--------
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig24   696214  7 -  1162296 G---ACACAT--------
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold412    103550 18 +   118955 atacaaaattgaaaatgc
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187296 15 +   783054 g---aaaaatgattgttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    61068 2534 +   161274 I

a score=-395.000000
s ce10.chrX               971124 15 + 17718866 AGCTTGAAGCATTAT
s caeSp111.Scaffold412    103568 11 +   118955 atCGGAAAGCA----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187311 11 +   783054 atgttgaaata----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    61068 2534 +   161274 I
e cb4.chrX              21350697 28 - 21540570 I
e caeRem4.Crem_Contig24   696221 10 -  1162296 I

a score=533.000000
s ce10.chrX               971139 12 + 17718866 AGTAGATCTAGA
s caeRem4.Crem_Contig24   696231  9 -  1162296 ---atttttatt
i caeRem4.Crem_Contig24 I 10 I 13
s caeSp111.Scaffold412    103579 12 +   118955 ACTGAGTTTATT
i caeSp111.Scaffold412  C 0 I 34
s caePb3.Scfld02_62       187322 10 +   783054 --taatttttga
i caePb3.Scfld02_62     C 0 I 8
s caeJap4.Scaffold17495    63602 12 +   161274 AATAAATTTACA
i caeJap4.Scaffold17495 I 2534 C 0
e cb4.chrX              21350697 28 - 21540570 I

a score=98501.000000
s ce10.chrX               971151 127 + 17718866 ACTTACCATTC-----ATTGCTAAGAAGCGGGTAGTTGTCAAGCCTCCCACGCTGGCAAGACTCGATCATGTTCTTGAGATACGGCGAATGCTGGGTGTAAATGTTCTCAACTCCTTTGAGTCCTTTGATGA
s cb4.chrX              21350725 127 - 21540570 ACGTACCATTC-----ATTACTCAACAATGGATAATTTTCTAATCTCCCACGCTGGCACATCTCCACAAGGGATTTGAGATATGGCGAGTGTTGAGTGTAAATGTTTTCAACACCTTTCAGTCCTTTGATGA
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig24   696253 127 -  1162296 ATTTACCAATC-----ATTGCTTAGCAACGGATAATTGTCGAGTCTTCCACGTTGGCACATTTCAACAATAGTTTTGAGGTAGGGAGAGTGTTGAGTGTAGATGTTCTCGACACCTTTCAGTCCTTTGATGA
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold412    103625 127 +   118955 acgtaCCACTC-----GTTGCTTAACAACGGATAGTTGTCCAGTCTCCCGCGCTGACACGCTTCGACAATATTCTTGAGATACGGTGAGTGCTGAGTGTAAATATTTTCGACGCCTTTCAATCCTTTGATAA
i caeSp111.Scaffold412  I 34 C 0
s caePb3.Scfld02_62       187340 123 +   783054 ----ACCAATC-----ATTGCTCATCAAAGGATAGTTGTCGAGTTTCCCTTTCTGGCACGCTTCaatgatgtttttgagatatggcgAATGTTGTGTGTAAATATTTTCGACGCCTTTGAGTCCCTTGATGA
i caePb3.Scfld02_62     I 8 C 0
s caeJap4.Scaffold17495    63614 130 +   161274 AATTACCATTCCGCCGATTCC--AGCAATGCAAAGTTTTCATATCTGCCCCGTTTGAATTTCtcgacaatattttttaaatagggCGTATGTTGTGTATAAATATTCTCAACTCCTTTCAATCCTTTGATAA
i caeJap4.Scaffold17495 C 0 C 0

a score=341.000000
s ce10.chrX               971278 5 + 17718866 ACCTG
s cb4.chrX              21350852 4 - 21540570 Atct-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696380 5 -  1162296 ATCTG
i caeRem4.Crem_Contig24 C 0 I 41
s caeJap4.Scaffold17495    63744 5 +   161274 ACCTT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       187463 0 +   783054 C
e caeSp111.Scaffold412    103752 0 +   118955 C

a score=819.000000
s ce10.chrX               971283 3 + 17718866 AAA
s cb4.chrX              21350856 3 - 21540570 aaa
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17495    63749 3 +   161274 AAA
i caeJap4.Scaffold17495 C 0 I 40
e caePb3.Scfld02_62       187463 0 +   783054 C
e caeSp111.Scaffold412    103752 0 +   118955 C
e caeRem4.Crem_Contig24   696385 41 -  1162296 I

a score=455.000000
s ce10.chrX               971286 5 + 17718866 ATTAT
s cb4.chrX              21350859 5 - 21540570 attat
i cb4.chrX              C 0 I 31
e caePb3.Scfld02_62       187463 0 +   783054 C
e caeJap4.Scaffold17495    63752 40 +   161274 I
e caeSp111.Scaffold412    103752 0 +   118955 C
e caeRem4.Crem_Contig24   696385 41 -  1162296 I

a score=0.000000
s ce10.chrX               971291 334 + 17718866 AGGTAGAATACCATGTACCTTTTGTAAATCTTGAGTCTTTCTTTAGTGCTACTAATGTTCAGTCAGTTTTGTCAAATTATTAGAGGTGTCAATAAATTTCTGGTCAAATGAATTAATATTTTTTGTTGCAAAACTCatttgtaattcttttataaataaagcagtttttaatcgctaaatttgcttactgtagacaaaaattaattcgaaattctgatttagacaactagtaacggataaaattgaaccaaatcagaaattgctgaagccgccaaatcaaccgaaactaagcccagatttCAGCCCAAATATTTGATTACGCTGATTCACTGTT
e caePb3.Scfld02_62       187463   0 +   783054 C
e caeJap4.Scaffold17495    63752  40 +   161274 I
e cb4.chrX              21350864  31 - 21540570 I
e caeSp111.Scaffold412    103752   0 +   118955 C
e caeRem4.Crem_Contig24   696385  41 -  1162296 I

a score=260.000000
s ce10.chrX               971625 4 + 17718866 GCTC
s caeRem4.Crem_Contig24   696426 4 -  1162296 GCTT
i caeRem4.Crem_Contig24 I 41 C 0
e caePb3.Scfld02_62       187463 0 +   783054 C
e caeJap4.Scaffold17495    63752 40 +   161274 I
e cb4.chrX              21350864 31 - 21540570 I
e caeSp111.Scaffold412    103752 0 +   118955 C

a score=49072.000000
s ce10.chrX               971629 76 + 17718866 ACCTCTTCGTAATGTCAATAGTCGATTCACCACCAAACAAATCGGCAGGTCTCCTTGAAAGTCCACCATATTTGAG
s cb4.chrX              21350895 76 - 21540570 ACCTTTTAGTGATATCGATTGTTGATTGCCCTCCAAACAAGTCCGCAGGATGTCTTCCGGCTCCACCATACGAAAG
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig24   696430 76 -  1162296 ACCGTTTAGTGATATCAATTGTAGACTGTCCTCCGAATAGATCTGCAGGTCTTCGTCGGGATCCACCATAACTGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    103752 76 +   118955 ATCGTTTTGTGATATCAATTGTCGACTGTCCACCAAACAGATCTGCTGGTCGCTTTGAAGTTCCTCCGTATTTCAG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187463 76 +   783054 ACCGTTTGGTTATATCAATTGTAGACTGTCCACCGAAGAGGTCCGCTGGCCGTCTTGAAACTCCGCCATATTTCAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    63792 76 +   161274 ACCTTTTTGTAATGTCTATCGTTGAATGTCCACCAAAAAGATCGCTGGGTTGTTTGGCAGAACCACCATAGTTTAG
i caeJap4.Scaffold17495 I 40 I 85

a score=-10678.000000
s ce10.chrX               971705 88 + 17718866 CAGCGTCGACACCGTTTGATGGATTTTTGGATGCTGAAAAAGCATGAAATTTTTTTAAACCCAGAATACACCAGTTGCCTAC----CTGTGG
s cb4.chrX              21350971 59 - 21540570 CAATACTTTACatgttttctcgatttccgaTTTCAAACG----CTGAATGTACATTA-----------------------------TTGAGa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696506 58 -  1162296 TAAGGCCTTCACCGTTTGTTCTATTTTGGAACGCTagaa----ttaaaaattcatt------------------------------CCGATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    103828 39 +   118955 AACCGTGTCCACTATCAGGTCAAGTTTTGGGTG-----------------------------------------------------TTGTTG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187539 88 +   783054 CACAACCTCAACAATCGCGTCGAGTTTTGGACACTAAAA----ATTAGATTGTTTGAGTAAGGGTGAGCtctatcaaaaaaccaacctgatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    63868 85 +   161274 I

a score=17794.000000
s ce10.chrX               971793  92 + 17718866 TCTGAGTTGACTG---------------ATCAATGAGTTTAATTCGTTGCCGG--------GTGCGTTTTCGAAACGAAGAGCGTAGAGAAGCACAAGACGGATGATGTCCTGAA
s cb4.chrX              21351030 115 - 21540570 tctaatttgaattttttgattaccGGCGGCACTTGTTCGAAAAGTGACTTCAATTCGTTTGAGGATCCTTGAAACCGAAGAGCGTACAACAGAATCAGACGGAACATATCCTGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696564 115 -  1162296 TCACAAGAGAAATAACATACGTGAGGTCCCAACTGCCGGTAGAGACTCTCCAGTTCATTTTGAGTCCCTTCATAGCGGATTGCATACAACAGAACAAGGCGAAGAATGTCCTAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    103867  92 +   118955 TCTCAATTGATTT---------------GTGATACTGCGGAGATCAGCTCCTG--------GCATGTTTTGGAAACGAAGAGCGTAGAGAAGCACAAGTCGAATGATGTCCtaaa
i caeSp111.Scaffold412  C 0 I 102
s caePb3.Scfld02_62       187627  92 +   783054 tttcagttgacta---------------gTGAGTGCCCGAAGATCCGCTCCAG--------GAACATTTTGAAAGCGGAGTGCGTACAGAAGAACTAGTCGAATGATGTCctgga
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    63953  90 +   161274 TCTGGGT--ATGT---------------AACAACGATCTGAGCTCATTGCCag--------ggaaattttcgaatcgaAGAGCATAAAGTAAAATCAACCGGATCGTATCCTAAA
i caeJap4.Scaffold17495 I 85 C 0

a score=873.000000
s ce10.chrX               971885 4 + 17718866 AATG
s cb4.chrX              21351145 4 - 21540570 ATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696679 4 -  1162296 ATta
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       187719 4 +   783054 attt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    64043 4 +   161274 AATG
i caeJap4.Scaffold17495 C 0 I 28
e caeSp111.Scaffold412    103959 102 +   118955 I

a score=-1523.000000
s ce10.chrX               971889 5 + 17718866 GGTGT
s cb4.chrX              21351149 2 - 21540570 GC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696683 5 -  1162296 aatat
i caeRem4.Crem_Contig24 C 0 I 227
s caePb3.Scfld02_62       187723 5 +   783054 gtttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    64047 28 +   161274 I
e caeSp111.Scaffold412    103959 102 +   118955 I

a score=-674.000000
s ce10.chrX               971894 5 + 17718866 ACTGA-
s cb4.chrX              21351151 5 - 21540570 -TCAAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       187728 5 +   783054 tttga-
i caePb3.Scfld02_62     C 0 I 160
e caeJap4.Scaffold17495    64047 28 +   161274 I
e caeSp111.Scaffold412    103959 102 +   118955 I
e caeRem4.Crem_Contig24   696688 227 -  1162296 I

a score=759.000000
s ce10.chrX               971899 79 + 17718866 TCGTGATAACTAAATTCaat-taaaaa----tataatta--tatacttctatgtatcatttaacaaaataaattttttaaaaatat
s cb4.chrX              21351156 83 - 21540570 TTGTGAAAACAACAAGGAGTATAAAAACCAGCATGACCAGGTATACTAATAACTatcagatcaaaaaat---tgttgtaTAAATAT
i cb4.chrX              C 0 I 15
e caePb3.Scfld02_62       187733 160 +   783054 I
e caeJap4.Scaffold17495    64047 28 +   161274 I
e caeSp111.Scaffold412    103959 102 +   118955 I
e caeRem4.Crem_Contig24   696688 227 -  1162296 I

a score=0.000000
s ce10.chrX               971978 405 + 17718866 aGCACACACTTCAGTGTTGTGTGCCTTGAAAAAAAAAATTTGCGTATGCACTGACCAAACTTATGTTTGCACTGACTAAATGACCAGCTATTTTTCCTAGTTTGTTGAAGCTGTAGTATCTAATTTTAAAGTAGCTAATGAATTTACTTAAAATTATAGGATACAGGAAACAAAATCCTTTCCTGAGCACCACGTTGGCGAAAATATAtaccgtatttcatctattagtcttgcagcctctattagtcttgcacccctacggaccaattgaaaattagttttgcatgcaagactaataaaggaaatacggtaATTGGTCATTTGCGATAACAAATCTCAGTATTTTCTCGTGTTTGTTTTGGCATTCAGAATCTAAAAATGTTCATTCCGGATTTTTTTGCGGTG
e caePb3.Scfld02_62       187733 160 +   783054 I
e caeJap4.Scaffold17495    64047  28 +   161274 I
e cb4.chrX              21351239  15 - 21540570 I
e caeSp111.Scaffold412    103959 102 +   118955 I
e caeRem4.Crem_Contig24   696688 227 -  1162296 I

a score=339.000000
s ce10.chrX               972383 10 + 17718866 TATGTTACTG
s caeSp111.Scaffold412    104061 10 +   118955 TATATTGATA
i caeSp111.Scaffold412  I 102 C 0
e caePb3.Scfld02_62       187733 160 +   783054 I
e caeJap4.Scaffold17495    64047 28 +   161274 I
e cb4.chrX              21351239 15 - 21540570 I
e caeRem4.Crem_Contig24   696688 227 -  1162296 I

a score=391.000000
s ce10.chrX               972393 3 + 17718866 TTA
s cb4.chrX              21351254 3 - 21540570 TTA
i cb4.chrX              I 15 C 0
s caeSp111.Scaffold412    104071 3 +   118955 ATA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       187733 160 +   783054 I
e caeJap4.Scaffold17495    64047 28 +   161274 I
e caeRem4.Crem_Contig24   696688 227 -  1162296 I

a score=1000.000000
s ce10.chrX               972396 1 + 17718866 C
s cb4.chrX              21351257 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696915 1 -  1162296 C
i caeRem4.Crem_Contig24 I 227 C 0
s caeSp111.Scaffold412    104074 1 +   118955 C
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187893 1 +   783054 C
i caePb3.Scfld02_62     I 160 C 0
e caeJap4.Scaffold17495    64047 28 +   161274 I

a score=54883.000000
s ce10.chrX               972397 104 + 17718866 TCACCACTTCTCTGGTTTTCGTATTTTTCAGCAGTCCTCGAACAAGATTGATACATTTGCCATGATCCCCATCTGACACAATTGCCTGCTCTACCTGAAACC-------------------------------------------AC
s cb4.chrX              21351258 147 - 21540570 TAACCACATCtcttgttttggaatttttcaacagCGACCGAATTTTGTTGATACATTTGTTGTGGTCCCCGTCCGACACAATTGTTTGttccagctgaaaaatggTTAGTTTTTATAGTAGCCTTCTTCATTGCTCTATTTTATGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   696916 104 -  1162296 CCACCACTTCTCTGGTCTTCGGACTCTTCAGGAGCGCACGGATCTTATTGATACACTTGTTCTGGTCTCCTTCTGACACGATCGTCTGCTCACACTGCAAAA-------------------------------------------AC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104075 108 +   118955 TCACcaattctctgatttttggatttttgaatagtgCACGAATTTGATTGAGACATTTGCTTTGCTCTCCGTCTGATACGATTGTTTGCTCGAGCTGAAACG---------------------------------------CAGGCA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       187894 107 +   783054 TTACCAATTCTCGtgttttcgaattcttcgCCATCCCACGAATCTGATTGAAGCACTTGCTCTGCTCGCCGTCTGACACAATCGTTTGTTCTACCTGAAAT----------------------------------------CACGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    64075 104 +   161274 TTACCAATTCTCTAGTTTTCGGATTGTTGATAACTTCCCGAATTCGTTGTATGCATTTGCTATGATCGCCTTCAGACACAATGAGTTGCTCCAActtaaacc-------------------------------------------aa
i caeJap4.Scaffold17495 I 28 I 27

a score=-10590.000000
s ce10.chrX               972501 25 + 17718866 TTT--CTACGTTTTGACACGTTTTTT------------------------T
s cb4.chrX              21351405 51 - 21540570 TGTTACTGAACTAAGAAGCGCCTGTCACCAAAAACAAGACAAAGAAAGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697020 24 -  1162296 TTTCATTAGGCTTTAAA---CGTATC------------------------A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104183 14 +   118955 TGTGAT----------A---TTTCCT------------------------C
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       188001 24 +   783054 TTTTATAACAGCATCAA---TCTCCT------------------------A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    64179 27 +   161274 I

a score=209174.000000
s ce10.chrX               972526 243 + 17718866 -AAACTGTAT---TACCTCTGAGACTCCTAATAAATTATGCTTCTGAACAAGATTACTAAGTTCGCCTACAAGGCTGACGTGTTTCGACACTGTTCCACTGATCTTCTTAAACTGTGGATAGTCTTCCACAAACTTTTTCATATCCTGAATCGACTCCAAATTCTTGTTAATATGCTTTTTCTCCTGAAACTCGCTGATCAACGTCTTGATATTTTGCCCGATTTCTCCAAAGTTGGCAGTAATATT
s cb4.chrX              21351456 243 - 21540570 -AATCTCAGT---TACCTCAGAAATCTCCAACAAATTGTGTTTTTGAATAAGACTACTAAGTTCTCCAACCAAGCTGACGTGCTTCGACACTGTAccactgatttttttgaactgagGATAATCCTCCACGAATTTCTTCATATCTTGAATCGACTCTAAGTTTTTGTTGATAtgctttttttcttggaattcgCTAATCAATGTCTTGATATTTTGACCGATCTCTCCAAAATTAGAAGTGATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697044 246 -  1162296 -AATATCCATTCCTACCTCTGAGATCTCCAACAAATTATGCTTCTGGATAAGATTACTGAGCTCTCCAACCAAAGTGACATGCTTGGATACTGTACCACTAATCTTCTTAAATTGTGGATAGTCTTCTACAAACTTCTTCATGTCTTGAATCGACTCCAAGTTCTTATTGatatgttttttctcttggaaCTCGCTGATCAACGCCTTGATGTTCTGACCGATTTCTCCAAAGTTTGAAATGATGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104197 243 +   118955 -ACTTTTGACG--CACCTCTGAGATCTCCAATAAATTATGCTTCTGGACGAGACTACTTAGTTCTCCAACCAAACTAACATGTTTTGACACAGTTccactgatttttttgaattgaggATAGTCTTCAATAAATTTCTTCATGTCTTGAATCGACTCCAAGTTTTGTTGTATATGCTTTTT-TCCTGGAACTCGCTGATCAgtgtttttatattttggcCAATCTCGCCAAAGTTTGATGTAATGTT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       188025 241 +   783054 -A---TTCGCT--CACCTCCGATATCTCCAACAAGTTATGTTTCTGAACCAGGCTACTCAACTCTCCGACTAAGCTGACATGCTTTGAGACTGTTCCACTAATCTTTTTGAACTGAGGATAGTCTTCAACAAATTTCTTCATGTCTTGAATAGACTCCAGGTTCTTATTGATGTGTTTTTTCTCCTGGAACTCGCTGATcaatgtttttatgttttgtcCGATCTCTCCGAAGTTTGAAGTGATGTT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    64206 245 +   161274 aaacatttttt--caccTCTGAAATTTCAAGCAAATTGTATTGCTGAACTAAACGACTGAGCTCGCCTACAAGCCCTACGTGTTTTGAAACAGTGCCACTTATTTTCTTCAATTGCGGGTAATCTTCGACAAATTTCTTCATATCTTGGATTGACTCAagatttttattaatttttttcttctcttgaAACTCATTGATCAGCGTTTTGATATTCTGTCCGATTTCGCCAAAGTTTGCAGTTATGTT
i caeJap4.Scaffold17495 I 27 I 1144

a score=184223.000000
s ce10.chrX               972769 267 + 17718866 TCTCGCAAAAAATTCATCGTGAAGCTCGCTGAGCACAATGTTCTGATCAGTACATGTGCATCTGTTATTTGTCAATGTGAGCATTTCATGGATCATCGCTTCATACGTCCATTGGTTGAGCAGAGGAGTCACCGCGTCCTGGGATCTTTCAATAATCAGAAGAGTGGTGTCAGCTCTAGAGTTTTCGAAAAGCCCGTTTTCCCGGCGAATGAATTGTGCTACATCATCGGCCACTTTTTTGCAACTCGGTGAAGACTTTTGGTATCT
s cb4.chrX              21351699 267 - 21540570 TTTGGCAAAGAAATCATCATGTAATTCACTGAGAACAACGCTCTGGTCCGCACACGTGCAACGATTATTTGTCAGGGCGAGCATCTCGTGGATCATAGCTTCATAAGTCCATTGGTTGAGTAGCGGCGTTGCAATGTCTTGAAAACGTTCGATCACTAGGAGTGTAGTATCTCGTTTTGCGTTTTCGAAGAGACCATTCTCTCGACGAATAAATTGGGCAACCTCATCAGCAATTTTTTGGCAGTTCGGAGAGTTTTTCTGATATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697290 267 -  1162296 CTTCGCGAAGAATTCATCATGCAGCTCACTGAGCACAATGCTCTGGTCAGTGCAGGTGCAACGGTTGTTGGTCAAAGTGAGCATCTCATGAATCATTGCTTCGTAAGTCCATTGGTTCAGAAGAGGTGTTGCAATATCTTGAGATCGTTCGATGACCAAAAGTGTCGTGTCGCTTTTGGCGTTTTCGAAGAGGCCGTTCTCACGGCGAATGAATTGCGCGACTTCATCGGCAATCTTTTTGCAGTTTGAGGACGTCTTCTGGTATCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104440 266 +   118955 CTTGGCAAA-AAATCGTCATGAAGCTCGCTCAACACAATGTTTTGATCAGAGCAAACACATCTATTGTTATTCAATGTGAGCATTTCATGGATCATGGCTTCGTAGGTCCACTGGTTCAGAAGAGGAGTTACGACGTCTTGGAATCTTTCAATCACGACAAGAACTGTGTCACTTTtggcattttcaaaaagcccGTTCTCTCTACGAATGAATTGAGCTACTTCGTCGGCAATTTTTCTACAATTCGAcgagtttttttgatatct
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       188266 267 +   783054 ATTAGCAAAGAAGTCATCGTGAAGCTCACTCAGTACCACATTCTGGTCTCCACAGGTACATCTGTTGTTTGTCAATGTGAGCATTTCATGTATCATTGCTTCATATGTCCATTGATTGAGAAGAGGAGTGACCACATCTATGGATCTTTCAACGACAAAAAGAACAGTGTCTTTCCTTGCATTTTCGAACAGTCCATTTTCTCGACGAATGAATTGTGCAACTTCTTCACcaacttttttgcagtttgagGACGATTTTTGGTatct
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    65595 266 +   161274 -TCTACaaaaaaaGCATCCTGCAGCTCATTAAGCACAATGTCTTGATCACCACAAGTCAACCGGTTGTTTGATGTGCCAAGGAGTTCATGAATCATAGCTTCATAAGTCCATTGATTTAAAAGTGGAGTAATAACATCTAAAGAGCGCTCGACGATTAACAAAATTGTGTCATTATCTGACGACTCGAACAATGTGTTTTCTCTTCTCATAAACTGAGAAACTTCTTCcgctatttttttgcaattctcaGATGTTTCGAGATACCT
i caeJap4.Scaffold17495 I 1144 C 0

a score=1646.000000
s ce10.chrX               973036 4 + 17718866 GAAA
s caeRem4.Crem_Contig24   697557 3 -  1162296 GAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104706 4 +   118955 gaaa
i caeSp111.Scaffold412  C 0 I 121
s caePb3.Scfld02_62       188533 4 +   783054 gaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    65861 4 +   161274 GAAA
i caeJap4.Scaffold17495 C 0 I 36
e cb4.chrX              21351966 0 - 21540570 C

a score=-1215.000000
s ce10.chrX               973040 5 + 17718866 AAAAA--
s caeRem4.Crem_Contig24   697560 5 -  1162296 CATCA--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       188537 5 +   783054 --tgaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    65865 36 +   161274 I
e cb4.chrX              21351966 0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=831.000000
s ce10.chrX               973045 59 + 17718866 ACATTGTAAAAGTATGCAACAAAGTAGTGACAATTGCATACAGTTTTTCGCATGTAGCA
s caeRem4.Crem_Contig24   697565 52 -  1162296 GTAGTttaaaagaaatcaataaacttG-GATAACTG------GGCTCTCACAAGCagca
i caeRem4.Crem_Contig24 C 0 I 19
e caePb3.Scfld02_62       188542  0 +   783054 C
e caeJap4.Scaffold17495    65865 36 +   161274 I
e cb4.chrX              21351966  0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=0.000000
s ce10.chrX               973104 60 + 17718866 GCTCCCAGATTACAATAAAAACAAAACTACAGCGTGTTATGTCTAACAATTACAAGCATT
e caePb3.Scfld02_62       188542  0 +   783054 C
e caeJap4.Scaffold17495    65865 36 +   161274 I
e cb4.chrX              21351966  0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I
e caeRem4.Crem_Contig24   697617 19 -  1162296 I

a score=852.000000
s ce10.chrX               973164 35 + 17718866 GCCAAAAATTTCTG--ATTGCAGCACACTTCTGCTCA
s caeRem4.Crem_Contig24   697636 37 -  1162296 GCTATGAATTCTTGTtaatttgataaatttctgCTCA
i caeRem4.Crem_Contig24 I 19 I 145
e caePb3.Scfld02_62       188542  0 +   783054 C
e caeJap4.Scaffold17495    65865 36 +   161274 I
e cb4.chrX              21351966  0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=0.000000
s ce10.chrX               973199 254 + 17718866 AGCGATGTAGTGCCAATTTTCAGCTGCGCGATAGTTATGATATGTATGTATATGTGCAAATTAATTTATCATACAATCGTATTGTTGGGGTAAAGACTTCTTTTTGTTTAGAACAAGGAAATTGGGTACAAGACGAAAAACAAAAGCAGTCACGCAATTGGATACTACTTGTAGACCAAAGACAAAAACAAACGAATGAATTTTTTTTCTCAATCGTATATTTTAGGGATCAGTTTTAGAGAAATTGAATCAAT
e caePb3.Scfld02_62       188542   0 +   783054 C
e caeJap4.Scaffold17495    65865  36 +   161274 I
e cb4.chrX              21351966   0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I
e caeRem4.Crem_Contig24   697673 145 -  1162296 I

a score=-641.000000
s ce10.chrX               973453 106 + 17718866 CTTTAGAATTAAAAGCTGCGAACACTCTCT-AAATTGAGATACCTTTATAAAAAAGCATGAACATGACTAATAAATAACCAAAATTTCAAAAAAAAGGTCAATGTCC
s caeRem4.Crem_Contig24   697818  68 -  1162296 CTTCAGAA--GACGGGTTTTAACTCTATTTCGAATTCAGGAACTATT------------------------TAACCTTCGACAATTTC-------------ATGTCC
i caeRem4.Crem_Contig24 I 145 C 0
e caePb3.Scfld02_62       188542   0 +   783054 C
e caeJap4.Scaffold17495    65865  36 +   161274 I
e cb4.chrX              21351966   0 - 21540570 C
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=153.000000
s ce10.chrX               973559 5 + 17718866 GCAAT
s cb4.chrX              21351966 5 - 21540570 ATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697886 1 -  1162296 ----t
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       188542 0 +   783054 C
e caeJap4.Scaffold17495    65865 36 +   161274 I
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=-312.000000
s ce10.chrX               973564 30 + 17718866 CCTTTACCAAT-T---TTCAAATTAGAAATTTCA
s cb4.chrX              21351971 31 - 21540570 CTTATCACAATGA---TCTGAAATCTgaataaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697887 31 -  1162296 cttcttgaaacat---tttcaactaaaaattacA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       188542 32 +   783054 cttttagCAACATGAGGTTGAAATAGAAGTTG--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    65865 36 +   161274 I
e caeSp111.Scaffold412    104710 121 +   118955 I

a score=-1668.000000
s ce10.chrX               973594  6 + 17718866 ----AAACTC
s cb4.chrX              21352002 10 - 21540570 tcaataaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697918  1 -  1162296 C---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104831  6 +   118955 ----AAACCC
i caeSp111.Scaffold412  I 121 C 0
s caePb3.Scfld02_62       188574  6 +   783054 ----AAACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    65865 36 +   161274 I

a score=116598.000000
s ce10.chrX               973600 180 + 17718866 TCACCGAACAGCTGGAGCCTTTTTCAACTGCAACAATAGCGCAATAATTCCGCACTTGATCCTTTCAGCGGCTTCTTCTTTCAACGTGAATGATGAGTCGAAGATGTGTGTCAAGTTGAGAGTGAACAAGTCTTTACGAATAGGAACTCCATCTAGAAACACTTCTTGAACCTCACGCAC
s cb4.chrX              21352012 180 - 21540570 taACCTCACAGCAGGATTTTTGCGCATCTGTAATAGCAAAGCAATGATTCCAGACTTGATTCTATCCGCCGCATAGTCCTtaacttcaaactttaaatCGAAAATGTGATAAAGATTGAGGGTGAAAAGATCCTTTCGCAGGGGAATCCCATCTAGAAACAGTTCTTGAACTTCTCGCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   697919 178 -  1162296 --ACCTGACAGCCGGAGCTTTCCGCAGTTGCAGCAACAGAGCAATGATTCCACTCTTAATTCTTTCCGCTTCATTCTCCTTGACATTGAAGCTTGAGTCGAAAATGTGGTTGAGATTCATAGTGAACAAATCTTTTCGGAGTGGAATTCCATCAAGAAATACCTCCTGGACCTCTCGAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    104837 180 +   118955 ATACCTCACTGCAGGTGCCTTTCTCAGTTGAAGCAGTAAAGCAACGATTCCACATTTGAGTCTCTCTGCTGAATGGTCTTTGACATTAAACGtagaatcaaaaatgtgaTGAATGTTCAAAGTGAACAAGTCTTTGCGAAGAGGAATGCCATCCAAGAACACTTCTTGAACTTCGCGAAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       188580 180 +   783054 TCACCTCACCGCCGGCGCTTTTCTCAATTGCAACAACAAAGCAatgattccatttttgatccGTTCCGTCGCATGATCTGTGATATTGAATGTAGCATCAAATATATGGTTGAAGTTGAGCGTGTATAGATCCTTGCGAAGAGGAATACCATCAAGGAACACTTCTTGAACTTCTCGAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    65901 180 +   161274 ttacCTCACGGCGGGCTTTTTCTTAAGTTGCAGTAGAAGTGCTACGATTCCACTTCTTATTCTTTCAATCGCATAGTCTTTCACTTTGTAATTCGATTCGAAAATATTTGAAATATTCAAAGTAAACAAGTCTTTTCTGAGCGGAATTCCATCCAAAAATACTTCTTGTACCTCACGCAC
i caeJap4.Scaffold17495 I 36 C 0

a score=-2024.000000
s ce10.chrX               973780 17 + 17718866 CTGGAATTTGTTGAAAA
s caeRem4.Crem_Contig24   698097  7 -  1162296 CTGCAAT----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105017  3 +   118955 CTG--------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       188760 17 +   783054 CTGGAAAAGATTTAAAA
i caePb3.Scfld02_62     C 0 I 737
s caeJap4.Scaffold17495    66081 15 +   161274 CTG--AATTATTAAAAA
i caeJap4.Scaffold17495 C 0 I 618
e cb4.chrX              21352192  0 - 21540570 C

a score=-6016.000000
s ce10.chrX               973797 150 + 17718866 ---ATACACTATTGACATATCCTATAGCGTATTAGTATTGCTTAAAAGTTTTTTGCATCGTTAAGTTATTGTCGGAAAGCAATAAATCTTTTTCTGATTCTCATAATTTAATCACGCAGCTTGAAAATTAGTTCTGTCCATAATAAAAAGTAC
s caeRem4.Crem_Contig24   698104  34 -  1162296 ---ATGGAACATT---------------------------------------------------------------------------------------TCATGGTTTCAA--------------------------TATAATGAAAAG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105020  71 +   118955 CAGATTCGATATT----CAacttata----------------------------------------------------------------tttttga---ttacaGTTCAAA-----------ATAATACATTCTGTTTATGACGAAAAATCT
i caeSp111.Scaffold412  C 0 I 5
e caePb3.Scfld02_62       188777 737 +   783054 I
e caeJap4.Scaffold17495    66096 618 +   161274 I
e cb4.chrX              21352192   0 - 21540570 C

a score=4728.000000
s ce10.chrX               973947 7 + 17718866 TACTTAC
s caeRem4.Crem_Contig24   698138 5 -  1162296 --CTTAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105096 7 +   118955 CACTTAC
i caeSp111.Scaffold412  I 5 C 0
s caePb3.Scfld02_62       189514 7 +   783054 TACTCAC
i caePb3.Scfld02_62     I 737 C 0
s caeJap4.Scaffold17495    66714 7 +   161274 TACTTAC
i caeJap4.Scaffold17495 I 618 C 0
e cb4.chrX              21352192 0 - 21540570 C

a score=39367.000000
s ce10.chrX               973954 99 + 17718866 AGTCTCATTTTTGTCTGCTTCAGCCAGCCGCTTCACATCATATTTGTTGATTGTGTTTGTAAAATCT----GAAAAG-----CAT-ATTCATTGAAAACTAGTATTTTT
s cb4.chrX              21352192 99 - 21540570 GGTCTCATTCTTGTCGGATTCTGCCAATCGTTTAACGTCGAATTTGTTCACAGTGTTGGTGAAATCT----AAACAACGATTCGTCATTTTAGTTG------TTTCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698143 97 -  1162296 AGTTTCGTTTTTGTCGGACTCCGCAAGCCGTTTCACATCGTATTTGTTGATAGTGTTGGTGAAATCT----GAAAGATTA-TCGT-GTTCGGATAA------TGTTTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105103 99 +   118955 CGTCTCATTTTTGTCGGCCTCTGCTAGTCTCTTTACGTCGTATTTGTTGATAGTGTTTGAGAAATCT--AAAAGTAACTA--TAT-ATTTTCGCAA-----TTGTTGCT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189521 98 +   783054 CGTCTCGTTCTTATCTGCTTccgccaattttttgacatcgtACTTATTGATGGTATTCGTGAAATctgcagaaaaaatga--tat-atTTCCGAAA------AGT--AT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    66721 98 +   161274 CGTTTCGTTTTTGTCTGCCTCGGCTAATTTTTTCACATCGTATTTGTTGATTGAATTAGAgaaatctgca-aaaaaattaatagt-gGAACAGGAA------TTTT---
i caeJap4.Scaffold17495 C 0 I 1865

a score=-4003.000000
s ce10.chrX               974053  7 + 17718866 TCTGTAA-----
s cb4.chrX              21352291  6 - 21540570 GCAAAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698240 12 -  1162296 TCAAGAATAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105202  7 +   118955 TTGACGA-----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189619  7 +   783054 TCGAGCC-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    66819 1865 +   161274 I

a score=78994.000000
s ce10.chrX               974060 95 + 17718866 ACTCACAAAGATAGTACTGGCTGAATCTTGGCTCCTGGAGCTCTTTCACCAGTCGCTCAATATTTTTGGGTGTCGGCCGGACGAATACCACGCAT
s cb4.chrX              21352297 95 - 21540570 ACTAACAGAGATAGTACTGGCTGAATCGCGGCTCCTGAAGTTCTTTGACCAAACGATCGATGTTTTCAGCTGTAGGACGAACAAAGACAAcgcat
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24   698252 95 -  1162296 ACTTACAAAGGTAATACTGGCTGAATCTGGGGTCTTGAAGCTCTTTGACCAGTCGTTCAATGTTTTGGGCTGTTGGGCGGACGAAAACAATGCat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105209 95 +   118955 ACTAACACAGATAATATTGATTGAATCGTGGTTCTTGAAGCTCCTGGACAAGCCGATCAATGTTTTCAGCAGTTGGACGCACGAAAACAACACAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189626 95 +   783054 ACTTACAAAGATAATATTGACTGAATCGAGGTTCCTGCAGTTCTTTAACAAGGCGTTCGATGTTTTGAGTAGTTGGTCTAACGAAAACCACACAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    68684 95 +   161274 ACTGACATAAATAATATTGACTGAATCGTGGCTTTTGAAGTTCTTCGGCTAGTTGTTCAATATTTTTAGGCGTTGGACGCAAGAAAACTatgcat
i caeJap4.Scaffold17495 I 1865 C 0

a score=1820.000000
s ce10.chrX               974155 2 + 17718866 TT
s caeRem4.Crem_Contig24   698347 2 -  1162296 tt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105304 2 +   118955 TT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189721 2 +   783054 TT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495    68779 2 +   161274 tt
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21352392 2 - 21540570 I

a score=80168.000000
s ce10.chrX               974157 116 + 17718866 CAAGTTTTTGATGTTTTCAGATGAGGTCTTGTTCTCAATTCTATCGAATATATA------------------------------------------AACTTCTTTTTGCATCACCTCCGACTGCGCAAATGCGCATGACACTGTTGGAGTCTGGAAAA--
s cb4.chrX              21352394 116 - 21540570 cagatttttaatgttttccgCTGAAGATCTGTTTTCGATTCTGTCGAAAATGTA------------------------------------------CACTTCTTTTTGCATGACTTCTGACTGAGCGAAGGCGCATGAAACGGTTGGAGTCTGTAAAA--
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24   698349 111 -  1162296 gaggtttttgatgTTCTCCGaagatgttttgttttcaattctgTCGAATATGTA------------------------------------------CACTTCTTTTTGCATCACTTCGGACTGGGCGAATGCACACGAGACGGTGGGAGTCTG-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105306 115 +   118955 TAGACTTTTGATGCTGTCTGCcgaagttttattttcaattctatcaaaaatgtA------------------------------------------CACTTCCTTCTGCATTACTTCGGATTGGGCATAAGAGCAGGAGACCGTAGGAGTCtgcaaa---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189723 116 +   783054 GAGGTTTTTGATGTTGTCAGATGGAGTTTTGTTCTCAATTCGGTCGAAGATGTA------------------------------------------CACCTCTTTCTGCATAACTTCGGATTGAGCGAATGCGCAAGAGACTGTtggtgtctgaaaaa--
i caePb3.Scfld02_62     C 0 I 65
s caeJap4.Scaffold17495    68781 160 +   161274 caaatttttgattatttcCGTAGAATTCCTGTTATCAATTCGATCGAATATATATACCTGAATCCTTAAATTAAATAGAGCTCGCTAATGTGGTTTTACTTCTTTTTGCATGACTTCGGATTGAGAAAAAACACAGGAAACGCATGGAGTCTTAAAACTG
i caeJap4.Scaffold17495 C 0 C 0

a score=24.000000
s ce10.chrX               974273 26 + 17718866 AAATTTAGCGTTG--ATTTTATTTGAAA
s caeJap4.Scaffold17495    68941 22 +   161274 ------aaatttgttaataaatttgaaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       189839 65 +   783054 I
e cb4.chrX              21352510  0 - 21540570 C
e caeSp111.Scaffold412    105421  0 +   118955 C
e caeRem4.Crem_Contig24   698460  0 -  1162296 C

a score=-15816.000000
s ce10.chrX               974299 262 + 17718866 ACGTGTGAAAAAACTACTCATCATTTAAAATTGTATGTTT-ATATGATTTTTCATACTAATCTAAGCATTAACTTTATTAAAAATCTATAGCTGATATAAATTCATAATAAACATTTAGGCTATTGTGAATATACAATACGTTTTGCTCATTTTTGGATTTCCTCTATATTTTAAGTGtttattatatttattatttattattttGTTAGATTAAGTAATTCAAAAATAGACATAAATGTTACTGAAAAATTTGCAAA----ACGTG
s caeRem4.Crem_Contig24   698460 163 -  1162296 ----------AAAGTACTTATTGTCGAAAATGATACATTTCGAATGGTTTAGTA-ACTCAT----------ACCTTCTCAAAAAT---------------------------------GGTTCTAATAGAACTGT-ATACTGCTTCGTCACCTT---------TTCAGAGTGGAAGTTTTTGTTAAGCATGT--------------------------ATTCAGAATT---TATAAAAGTAATTTTaag--ttgaaaa---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105421  66 +   118955 --------------ttcttttt-----------tatacaACAAGTGG----------------------------------GAAT---------------------------------GAAAATTATGGAG-------------------------------------------------------------------------------------------AAAAAC---CAtaatatta----------ttgaaaataga-----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       189839  65 +   783054 I
e caeJap4.Scaffold17495    68963   0 +   161274 C
e cb4.chrX              21352510   0 - 21540570 C

a score=-9366.000000
s ce10.chrX               974561 83 + 17718866 TTGTTAATTTACGTTTTAGTATAACTTTTTGACACAAGTTTTAATTATTTTTCCTAACCGAATAATTACATTTTTACACTTTC
s cb4.chrX              21352510 27 - 21540570 TTGTCCAT-------------GAacttttcaa-------------------------------------------acgttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698623  4 -  1162296 ----------------------------tcaa---------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105487 13 +   118955 ----------------------gaCTCAATAA-------------------------------------------ACG-----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       189839 65 +   783054 I
e caeJap4.Scaffold17495    68963  0 +   161274 C

a score=-6676.000000
s ce10.chrX               974644 5 + 17718866 ----AA-ATC
s cb4.chrX              21352537 2 - 21540570 ----ga----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698627 1 -  1162296 -----a----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105500 2 +   118955 -----AA---
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495    68963 5 +   161274 aaatg-----
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       189839 65 +   783054 I

a score=88031.000000
s ce10.chrX               974649 106 + 17718866 AACTCACTGTTTCCCCATCCATAAGTAGTAATTTCATCTGCGAGCCGGCAAGTTGGATCATGTCCTGTATCAATTTTCGGCTTGACTGCACGAGATCCATGGTTGA
s cb4.chrX              21352539 106 - 21540570 aaCACACCGTTTCCGCGTCCATGAGAAGCAATTTCATTTGTGAACCGGCTAACTGAATCATGTCCTGTATGAGTTTCCGGCTTGAATGTACGAGATCCATTGCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698628 106 -  1162296 aactcactgtcTCCGCGTCCATAAGAAACAATTTCATCTGGGATCCGGCCAGCTGAATCATATCCGATATCAATTTCCGACTTGATTGTACGAGATCCATTGTTGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    105502 105 +   118955 -ACTCACCGTTTCTCCATCCATAAGAAGCAGTTTCATTTGTGATCCCGAAAGTTGAATCATATCTTGTATCAATTTTCGACTGGATTGCACGAGATCCATCGTTAA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       189904 106 +   783054 aactcacagtttCGGCGTCCATAAGAAGCAATTTCATCTGTGATCCAGCCAATTGGATCATATCCTGTATCAGCTTTCGGCTTGATTGCACTAAATCCATGGTTAG
i caePb3.Scfld02_62     I 65 C 0
s caeJap4.Scaffold17495    68968 106 +   161274 aacataCCGTTTCTGCATCCATTAGTAACATTTTCATTTGAGAACCAGCCAAGTCAATTATGTCAGAAATTATTCGACGACTTGATAAAACGAGATCCATTGCAGA
i caeJap4.Scaffold17495 C 0 I 52639

a score=-9033.000000
s ce10.chrX               974755 16 + 17718866 TT---------AGTAG--AAAGAGCTA-----
s cb4.chrX              21352645 13 - 21540570 AT---------CACGA--AAAATG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   698734 16 -  1162296 TT---------TGCAA--ACCGAGCCA-----
i caeRem4.Crem_Contig24 C 0 I 1078
s caeSp111.Scaffold412    105607 27 +   118955 TTATTCTCTGGAACAA--ACAATA---AATTA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190010 20 +   783054 TC---------GACAAGTAGAGTA---ACGGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-223.000000
s ce10.chrX               974771 66 + 17718866 GTGGCCAACGTGTATAAAAACATATG---------------------GTAAAAGAAAAGAAATGGAGAACTCTAGGCCGCGGCCGTC
s cb4.chrX              21352658 69 - 21540570 ATG---TTCAACTATATAGAATGATGACGTTTCTAACAAG-------ATGGAAGAGGA-AATTGCAAACCT-----TC--GGCCGTC
i cb4.chrX              C 0 I 629
s caeSp111.Scaffold412    105634 55 +   118955 ATGAACTGTGAATAAATAGA---------------------------GTGGAAGagca-aaacagaaaact--agGCC--AACCGTC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190030 73 +   783054 ATGAACTGCAATTGCAAAAACTAAT--------TGGCAAAACGAGGCgtggaagagga-aaatgaaaaact--agtCC---GCCATG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=846.000000
s ce10.chrX               974837 3 + 17718866 TCT
s caeSp111.Scaffold412    105689 3 +   118955 TCT
i caeSp111.Scaffold412  C 0 I 459
s caePb3.Scfld02_62       190103 3 +   783054 TCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=312.000000
s ce10.chrX               974840 9 + 17718866 GTCACCGCG
s caePb3.Scfld02_62       190106 9 +   783054 CTAACCACG
i caePb3.Scfld02_62     C 0 I 385
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeSp111.Scaffold412    105692 459 +   118955 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=0.000000
s ce10.chrX               974849 761 + 17718866  
e caePb3.Scfld02_62       190115 385 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeSp111.Scaffold412    105692 459 +   118955 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=1316.000000
s ce10.chrX               975610 51 + 17718866 aaaatcacaataataataaaaaaCCGGGATGTACTGAAAAACCTGATATTG
s caePb3.Scfld02_62       190500 47 +   783054 aagctcataataGTACTAAAAA--CAGGATGAATT--AAGACCTCGGAATG
i caePb3.Scfld02_62     I 385 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeSp111.Scaffold412    105692 459 +   118955 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=-962.000000
s ce10.chrX               975661 41 + 17718866 TTCAAAAAGTGTAATAGTCC--TAATAATACAAAAATAATACG---------
s caeSp111.Scaffold412    106151 42 +   118955 TTGAAGAAGCATATTGAGTG--AAaaacaactagaaaaatacAG--------
i caeSp111.Scaffold412  I 459 C 0
s caePb3.Scfld02_62       190547 52 +   783054 TTGAAAAAGCCAGATGATTTACAGAAACTCCTATAAATGTGAAATTCATTGG
i caePb3.Scfld02_62     C 0 I 35
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=-228.000000
s ce10.chrX               975702 29 + 17718866 TATAATTTG-----------AAAACATTGCACAATCCATC
s caeSp111.Scaffold412    106193 40 +   118955 TGAAATTTGGTTAAGAGCTAAAAAACTAGAGTAAAATATA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       190599 35 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I
e caeRem4.Crem_Contig24   698750 1078 -  1162296 I

a score=-382.000000
s ce10.chrX               975731 5 + 17718866 -AAAGC
s caeRem4.Crem_Contig24   699828 5 -  1162296 aaaat-
i caeRem4.Crem_Contig24 I 1078 C 0
s caeSp111.Scaffold412    106233 5 +   118955 AGAAG-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       190599 35 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I

a score=-1421.000000
s ce10.chrX               975736 6 + 17718866 -TCATG-A
s caeRem4.Crem_Contig24   699833 6 -  1162296 -taatga-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106238 6 +   118955 TTAAGG--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190634 6 +   783054 TTAGTG--
i caePb3.Scfld02_62     I 35 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21352727 629 - 21540570 I

a score=84366.000000
s ce10.chrX               975742 196 + 17718866 ATAATCATGGAAGATCATATTTCCCCATTGCGAGAGCAACTTTTCCACCATTCCGCGCGCATTTGGATCAGCAGACTCCATGAAAGCAGTATGTCCTCCGTGATTGGTGATAATACCGCAAACGTAGTCGCTCTCCATTATATCTAATGTAGGGATGCCTAAATAGGGGAAATG-------TATGAATAATTATTAAATTTGG
s cb4.chrX              21353356 176 - 21540570 ATAATCATGGAAAATCAGATTTCCCCATTGCGATAAAAGTTTCTCGACCATTCCACGAGCGTTTGGATCGGCAGACTCCATGAATGCAGTATGTCCTCCGTGATTTGTAATTATACCAACAACATGGTCGCTATTCATGATGTCTCCAGTGGGAATACCT--------GTAATC-------AAC-----------AAATTTG-
i cb4.chrX              I 629 C 0
s caeRem4.Crem_Contig24   699839 168 -  1162296 -taaTCATGGAAAACCAAGTTTCCCCATTGTGACAGCAACTTCTCTACCATTCCACGAGCATTTGGATCAGCGGACTCCATGAAAGCGGTGTGACCTCCATGATTGGTGATGATACCGAGcacattttcactttcagcGATGTCATTGATAGGGATACCT--------GGAATT-------TAG-------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106244 166 +   118955 ATAATCATGGAAAATCAAGTTTCCCCATTGCGAGAGGAGTTTTTCAACCATTCCACGAGCATTCGGATCGGCAGATTCCATAAATGCAGTATGGCCACCATGGTTTGTAATGATACCAATAACATTCTCACTTTGCAAGATATCGGTAGTTGGAATACCt--------gagaaa-----------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190640 173 +   783054 GTAGTCGTGGAAAATCATATTTCCCCATTGGGACAAAAGTTTCTCAACCATTCCACGAGCGTTAGGATCAGCAGACTCCATGAAAGCAGTATGTCCACCGTGGTTTGTGATGATTCCAATAACATGGTCACTTTGCATTATGTCATCGGTTGGTATGCCT--------Ggaatatgaattt----------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-6773.000000
s ce10.chrX               975938 64 + 17718866 TATTTTGTTTAAAAAATGTAATTAGAAAACTAGCTTT-TCAATTACATATTTAATATATATTTCA
s cb4.chrX              21353532  7 - 21540570 ----------------------------ACTAGTT------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    106410 17 +   118955 --------ttagaaaa------------gttagtttt----------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190813 25 +   783054 --------ttagaaaa-----ttatagTGTTTGTTTCA---------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   700007  0 -  1162296 C

a score=-1345.000000
s ce10.chrX               976002 35 + 17718866 TAAAAATTCCACACGTTTTATAATTTTTTGCAACC
s cb4.chrX              21353539 18 - 21540570 -----------CGCGCT------TTTTTAGCTACC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    106427 19 +   118955 -----------tgtgatt----gttttttgatgc-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       190838  0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   700007  0 -  1162296 C

a score=169.000000
s ce10.chrX               976037 3 + 17718866 CGC
s caeSp111.Scaffold412    106446 3 +   118955 tGC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       190838 0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21353557 0 - 21540570 C
e caeRem4.Crem_Contig24   700007 0 -  1162296 C

a score=-8057.000000
s ce10.chrX               976040 117 + 17718866 AATGTGTCGGTTGCTGTTATTACCGTAGAGCAAACACGTCTAATTATGAACTAGA----------GAAACGTAGCAAGCACTCATGTTTGTATATGAACATTAGTTTTCAAAGCTGTTCAAACCAAA----
s caeRem4.Crem_Contig24   700007  30 -  1162296 ATTGTTTCG---------ACCATTG----------------------GAATTAAC-----------AAGCAA-----------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106449 111 +   118955 AATGTTTAA--------CACTACTGTGTAGCTGAAATG-CTGCAAATGAATTGACCAATATATCGAAAACAAATGACGCAACAATGAT---------ACGGGAGTTTTCCAAAC--GTTAAATTATCTTGA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       190838   0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21353557   0 - 21540570 C

a score=489.000000
s ce10.chrX               976157 3 + 17718866 ACT
s caeRem4.Crem_Contig24   700037 1 -  1162296 --T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106560 3 +   118955 ACT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190838 3 +   783054 AGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21353557 0 - 21540570 C

a score=97864.000000
s ce10.chrX               976160 378 + 17718866 TACATTCCACCGGGCTGAAATAATCATCAACAGAATTCAGTGTTACACATGGAATCTTGATTTTGTCTACCTGGAA-----------ATTGATTTTTC-------------------------------AAATTTTTACAAACCAAGTTTCAAATGTTACCTTTGTCGCCAAAGTAGCCTGTCTGTAATAGTCATCGCAACTCTTGAACCCATACATGGGAATCACAAAAGATCGATCAAACCCTCTAACCGTATTGCATCTGCACACTTCGTCAAAATCCACCATATCTTTGAATAGCTCGCGGTACCTGGAATTGTGGGAGCTACTTATGAACTCAGGGGTTTGGTTCATTAATAGCTTAGCAGGAAATACTAAAAATTTGGGCGTA---AAGGAATTGCTTCAAATTAACGCGCAAAAAC
s cb4.chrX              21353557 239 - 21540570 TACATTGCACTGGGCTAAAATAATCGTCGACAGAGTTTAATGTGACGCatggaatttttattttgtca------------------------------------------------------------------------------------------acttttgtagctagagtagcCATTTTGTAATAAGCCTCATAACTTTCGAACCCGTACATTGGCGTAACAAATGATTTATCAAACCCTCTGACTGTTGTACTGCTGATAACTTCATCGAAATCAACCATATCTTTGAATAGTTCTCGgtacctgaaa--------------------------------------------------------------------------aaataaggaaagaAT--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   700038 232 -  1162296 TACATTGTACTGGACTGAAATAATCATCAACAGAGTTGAGTGTGACACATGGAATCTTGATTTTGTCG------------------------------------------------------------------------------------------ACTTTTGTTGCCAAAGTAGCCATTTTATAGTAAGCCTCATAGCTCTCGAAGCCATACATTGGTGTCACGAAAGCTTTGTCGAATCCTCTGACTGTATTGCATTTCAGAACTGCATCAAAATCTACCATATCCTTGAAAAGCTCTCGGTATCTGGAA--------------------------------------------------------------------------G---AAggaaa------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106563 269 +   118955 CACATTGAACGGGGCTAAAGTAATCATCAACAGCGTTTAATGTTACACAGggtatttttattttgtctACCTGAAA---------TCACCAatt---------------------------------agaaacattttcaatc---------aaatttaCCTTGGTTGCCAAAGTAGCCAACTTATAATAGTCCTCGTAGCTTTTAAACCCATACATTGGCGTAACAAATGACTTATCAAATCCTCTGACCGTGTTGCACTTACAAACCGCATCGAAGTCCACCAAATCTTTAAAAAGTTCGCGATATCTGCAA--------------------------------------------------------------------------A---AAGAC--------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       190841 321 +   783054 TACATTCAACTGGACTGAAGTAATCATCGACGGAGTTCAGTGTTACACaaggaattttgattttgtcaACCTGAAATGCAAAAGTTGACTGATTTTGGCAGAAAAATGCTTTCATGAGAAAAGgtaagaaaatattttcaagc-----------aCTCACTTTTGTAGCCAAAGTAGCTAATCTATAGTAGTCTTCGTAACTTTCAAATCCATACATTGGGGTGACAAATGATTTATCGAATCCTCTAACTGTGTTGCACCTACAAACTGCATCAAAATCGACCATATCCTTGAACAGATCTCGATaccttgaa--------------------------------------------------------------------------a---aataaatgatt--------------gaaaac
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-13277.000000
s ce10.chrX               976538 125 + 17718866 CAATCACTTAATGAGAAGCTTGCCAGCTCTTTGAGCACAGGGCCTGCTCATGTCTCCTCAAATTTTCTCAATGCCAATTTTTTATACCAACTACGTTTGTTGTTTAAAAGTCATCAGatttaaaa
s cb4.chrX              21353796  19 - 21540570 -------------------------------------------------------------ACTCCATCATTGccacttt---------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   700270  16 -  1162296 ----------------------------------------------------------------cttttattttttcttt---------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106832  25 +   118955 ---------AATGG---------------------------------------------AAAAGTTAccgtttcaaaat----------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       191162   0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=301833.000000
s ce10.chrX               976663 612 + 17718866  
s cb4.chrX              21353815 577 - 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24   700286 581 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    106857 520 +   118955  
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       191162 578 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-527.000000
s ce10.chrX               977275 3 + 17718866 TAG-
s caeRem4.Crem_Contig24   700867 3 -  1162296 -aaa
i caeRem4.Crem_Contig24 C 0 I 88
s caeSp111.Scaffold412    107377 3 +   118955 taa-
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       191740 0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392 33 - 21540570 I

a score=91.000000
s ce10.chrX               977278 1 + 17718866 T
s caeSp111.Scaffold412    107380 1 +   118955 t
i caeSp111.Scaffold412  C 0 I 30
e caePb3.Scfld02_62       191740 0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392 33 - 21540570 I
e caeRem4.Crem_Contig24   700870 88 -  1162296 I

a score=-1731.000000
s ce10.chrX               977279 82 + 17718866 TTGATGAAATGACAGCGTCTCCGTTTTGATATGAATTAACGTACATCAAGTTTATGAATCTATGAAACAATACATAGTTAAG
s caePb3.Scfld02_62       191740 20 +   783054 ----------------------------------------------caa---------------aaacaaca-atgatGAGC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392 33 - 21540570 I
e caeSp111.Scaffold412    107381 30 +   118955 I
e caeRem4.Crem_Contig24   700870 88 -  1162296 I

a score=-4120.000000
s ce10.chrX               977361  95 + 17718866 ATTTTCAATTATTGTTGTTTTGGCTA-------------------------TTAACTGTAAATATACCAG--------TTGAACCAACTAGATTCT-----AAATCGATTCAGCTATTCAAATTTTTGCTCAA
s caeRem4.Crem_Contig24   700958 131 -  1162296 ATTATCAATTGTTGCAAAATTAATTACGGTGGTTCAACAGATAACATTTGCTTTGCTCTAGATAAGCAAGCCCAGTacctaaaaaaatttgattttctcaaaaattggttcagt--ttgaaatttttgtccaa
i caeRem4.Crem_Contig24 I 88 I 166
s caePb3.Scfld02_62       191760  44 +   783054 ---------------------------------------------ACTTCTTTGAATTTAAATGAGTCA---------TTAGAAAAATTGTAC-----------------------------------TACAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392  33 - 21540570 I
e caeSp111.Scaffold412    107381  30 +   118955 I

a score=-1000.000000
s ce10.chrX               977456 109 + 17718866 TTGAACTAAACTGTTTCTAAGCACTAGACTCCACAGAAATGACTATCACATTTGTTTCTAGATAAGACGTGTGTTTTAAGCTCGGTTCAATCGACTAGACAACACATTT
s caePb3.Scfld02_62       191804  51 +   783054 T--AACTaagttgttg---------------------------------gttttttttcaga-aaga----------aagcT--------TCAGCGAGGCA----ATTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392  33 - 21540570 I
e caeSp111.Scaffold412    107381  30 +   118955 I
e caeRem4.Crem_Contig24   701089 166 -  1162296 I

a score=0.000000
s ce10.chrX               977565 109 + 17718866 TTGTACTGAATTTTCACACCCTTACGTCCTATATAAATTCAATTTTTGAAGTTCTGAACTCCAACTGAATATCTCAAAACTAGTAAACAAATTACGGTATATTAAATAC
e caePb3.Scfld02_62       191855   0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392  33 - 21540570 I
e caeSp111.Scaffold412    107381  30 +   118955 I
e caeRem4.Crem_Contig24   701089 166 -  1162296 I

a score=213.000000
s ce10.chrX               977674 16 + 17718866 AAAATATATACTTAAC
s caeSp111.Scaffold412    107411 16 +   118955 AAAGCAtgcataaaaa
i caeSp111.Scaffold412  I 30 C 0
e caePb3.Scfld02_62       191855  0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354392 33 - 21540570 I
e caeRem4.Crem_Contig24   701089 166 -  1162296 I

a score=-119.000000
s ce10.chrX               977690 12 + 17718866 ACTTAAAATTGA
s cb4.chrX              21354425 10 - 21540570 ACCCAAAACA--
i cb4.chrX              I 33 C 0
s caeSp111.Scaffold412    107427 12 +   118955 ataaaaaataaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       191855  0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   701089 166 -  1162296 I

a score=-2756.000000
s ce10.chrX               977702 4 + 17718866 ACAA---
s cb4.chrX              21354435 4 - 21540570 ---ACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   701255 4 -  1162296 ---ACTT
i caeRem4.Crem_Contig24 I 166 C 0
s caeSp111.Scaffold412    107439 4 +   118955 -tgat--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       191855 0 +   783054 C
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=76155.000000
s ce10.chrX               977706 406 + 17718866 ACCTTGTAAATGGTAGCGATGGACAATCCCGGAATATCTGTCGTACTACGGTTTGAGTCGTGCCAAAGGGGCACCACCAACTAGGATGGTACTTTTG---------------------------------------------------------CTCCAAAATCCTTAAATTCGAATGAACCTTCTTTTGAAGCTTGGTACCAGGCTTAACATAGTGCTTCGGTATCTGCAATCT----TATTCTCTTAACGGGATATTTAC----AATATGAAA-----CGTACTGCTGAAATGTACCAGGAATACATCCATAAAAATATCGGAGCAACTATCACCAAAGTCAAAATCAATGGCAGAACCATATTGAGCTG----AAAAAGTA-------------AAAA--ACTGATTTTATAAAAATTTAAAGCAAAATTGCGC--AGTTATGGTGCAAGAAAAAGCAAAAGACTCTAAAAAATGTATACTT---TAGCAAATTTTT----
s cb4.chrX              21354439 419 - 21540570 ACCTTTGGAACGGTAGCTCTGGACAGTCGCGGAAGATTTGACGAACAATAGTTTGCGTCGTTCCAAATGGACACCACCAGCTGGGATGATATTTCTG--------TCAGGTTTAAAGACCATGTGTgcccggaaaataaaaaaaaacgtacTTGCTGGAGTATTCTCAAATTGGTAGTTACtttcttttccagttttgtgCCAGATTTGACAAAATGCTTGGGCACCTGCAACAC----Taacgttttcaaataaattttttccaggaacta-----------ACTGCTGAAATATACCAAGAATAAAGCCACAAAAATATCGGAGTAATTATTCCCAACACCAAGATCAATGCAAACGCCATGTTACCCTGAA--AATGAATA------ACTTACCAATA-TATTC-------------Cgaatgaatg-------------------------aaaat----------ggaaataagATATTC-----ACGAGTAATCTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   701259 467 -  1162296 ACCTCTCGAAAGGAAGGTCTGGGCAGTTTCTGAAAAGCTGACGAACAACGGTCTGAGTCGTGCCGAATGGACACCACCAACTTGGGTGGTACTTCTGAAAACATATCGGGTTAACGAATCCTTTGAATCTTGAAACC-----ACAGTTTACCTGTTCCAAAACTCTCAAATTAGCCTGAGCCTTTTTGTGCAGCCATGTACCTGGTTTAACAAAGTGCTTTGGTACCTGAGAaca----taaattattattttagaTCATTT----GAATTGTAT----ACATACTGCTGAAATGTACCAAGAGTACATCCACAGGAATACTGGAGCAATTAGTACCAAGAAAAAGACCAATTCCAGAACCATATTGGGCTAAA--GCGAAAT--------CTCATTAGGAGTATTCACATTATGGAAGACGGACGATTGATTAAATACGATTAGTGGGAaaggaaaaac----------ggaaaaacagTGCTTTTAGGCTaaacaatacatt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    107443 385 +   118955 acCTTTTGAATGGAAGTTTGGGacaatctctgaaaatttgcCTGACGATAGTTTGAGTTGTTCCGAATGGACACCACCAACTAGGATGATACTTTTG---------------------------------------------------------CTccaaaattctcaaatttttctgagcCTTCTGTTGCAATTTAGTACCAGGCTTTACATAATGCTTCGGCAcctaaaaattgattt-----------ttaattttttt----gaagttaatGCTTGCTAACCGCTGATATATACCAGGAATACATCCATAAAAGTATCGGAGAAATTATCACTAAAGTCAAAAGCAATGTGATAAACATATCGACCTGA---AAACGATA-gtttttctcatgaaaa--at----attatt-------aataaataa-------------------aacaaaaaatttta-tctttcaaaaattcttattc------taattattt----
i caeSp111.Scaffold412  C 0 I 3
s caePb3.Scfld02_62       191855 418 +   783054 ACCTTTCGAAAGGAAGTGTGGGACAATCTCTGAATATTTGACGGACAATAGTTTGAGTAGTTCCAAACGGACACCACCAACTTGGATGATATTTCTG---------------------------------------------------------ATCCAGAATTCTCAAGTTCTTTTGTGCTTTCCGTTGCAGTTTTGTGCCATTTTTGACATAATGTTTTGGTACCTGAAAACTGGAGCAAAGTCAGGGGCTGTTccattt----gaaatcaat------ttaCCGCAGAAATGTACCAGGAGTACATCCACAGAAATATGGGTGCAACAATCACCAGCGTCAAAACAAAAGTGATTAGCATGGTtacctgaaataaaaaatacgtTTTGATCGCCAAAC--ACTCAGGTTATC-----CAAATAAATAATTGCGT--tataatttgagaaaagtagacatga-actttgaaaaaaaattattt-----gcaaGTATTT----
i caePb3.Scfld02_62     C 0 I 2176
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-2598.000000
s ce10.chrX               978112 13 + 17718866 TTGATTGCATCAA-------
s cb4.chrX              21354858 10 - 21540570 ---GTATTGTTAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   701726 10 -  1162296 ---tttctaCTAA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    107831 13 +   118955 -------cACGAAGCAACAA
i caeSp111.Scaffold412  I 3 I 11
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-1032.000000
s ce10.chrX               978125 14 + 17718866 ACCTAAGACT-------------GCTG
s cb4.chrX              21354868 10 - 21540570 Atttaacatt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   701736 27 -  1162296 ATGCAAGGCTACAATGTACCCCCGCTG
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeSp111.Scaffold412    107844 11 +   118955 I

a score=0.000000
s ce10.chrX               978139 1 + 17718866 A
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21354878 0 - 21540570 C
e caeSp111.Scaffold412    107844 11 +   118955 I
e caeRem4.Crem_Contig24   701763 30 -  1162296 I

a score=-1940.000000
s ce10.chrX               978140 30 + 17718866 AACATTTTGGAAAAATTGTTTCCTGGGTGC--
s cb4.chrX              21354878 20 - 21540570 ----------aaaaaatgttaatttagTAC--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    107855 18 +   118955 --------------AACTTTATGTAAAAATCC
i caeSp111.Scaffold412  I 11 C 0
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   701763 30 -  1162296 I

a score=-18382.000000
s ce10.chrX               978170 362 + 17718866 ATATTTTGGTTGGTAAGCCGAAAATG--CTCTATTAATAAAGGTAAACAGAAAAAAGAAGTTAAAAAGTTAA-----ATCTT-------TGAGAAATGTTAAATTATG---AAAAAAAAA----------ACTGAACAGAAAACCAA--AAACCTTTCCGAAC----AGAGAAAAACCAACTTTTTTCGCTACCAATTCACAATTCAATAATTTTCAATGAAATTGATGGCGCAA---AAGTTAATGGTTTCGATAAGAAAA-GTTCATAGAACGAGCGGTGCAACATTAATCAGCTT--------------TGCATGTACTTGAAGATC---------------TGATAACAGTGC----CGTTTTGTACTAAAAATG--CCTTGTTATCACCGAAAAAACTCAAGGTTTTTGTCTGATAAGAGTCATCGCAA
s cb4.chrX              21354898 332 - 21540570 --------------------AAAGTA--GCatctaaattaaa--aaaaagcttaaagctcccaaaaa-----------tttt-------gttgaa-----agagaaag---aaacaagaattagttatttactcaaaaaaaacccaaactGATTCTTGCATGCACTCACaaaaaaaGACACTCA-TCT--------------ACTTtacatttttcatcgaaattgaTGGTGCAA---CAA-AATAGTCGGAGATAAGATAACGCACATAGAACGATCGC-GTGAGACTAAT-TGCTT----CACAGGTACACCAAATTACAAGAAAACAGTTCACGTGCGTAAATGGTAACAAGGCTTAATACCTTGAATCTCTTGTGATAAGCGTAATAGTC----AAAGTCgaaaca----------a-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   701793 283 -  1162296 ----------------------------GTGTGTTATTTGA------------GAAGCTCTCAGAAAGCAGT-----CTCTT-------GCCGaa-----aaacaaaa---gcaaaatga--------------aagaaataatcaa--------------------acaaaaaaat--------------------------cgttaactttttcattgaaattaatGGCGCAAGTTCAG-TATACCAACCGATAAGATAA-GCCCACAGAACGATCGC-GTGATATTAATCTGCTTTGTGCAGCGGTACGCTGACTTACGGAATAGTTGTACCTGAGCGC---TGATAACACTGC-----ATTTTGTACATTTAGAG---AACGTTATCATT----AAAACGGAGAGACGTTTTTGATA-------------
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold412    107873 349 +   118955 caactttg-------aagaaaaaggactATATTTAAACTCAA--AATAAATGCAGAAATGGCCGAGATTTGTTAGTCCTCTTTACACTATTTGCA-----AGAGAATGTGCAGAGAAGGAGAACAGATTTTGCGGAGAGAAAGGCAC--CGatcattg-----------aagaaaagaaattaactGC--------------AGTCtgattttctcattgaaattgatggtgaaa---aaa-agttagatGCGATAAGATAA-GCCTAAAGAACGATCGG-GTGACACTAAT---CTT--------------GCGATTTACAGGAAACAACGTACTGAG------CGATAACGTTGT----CGTTACGTACTCTGCAAG---AACGTTATCAGc----aattc----acaattttttgatgatcaTTTTCACAA
i caeSp111.Scaffold412  C 0 I 1670
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=3038.000000
s ce10.chrX               978532 38 + 17718866 TT--TTTTTGACAGATCAGGCCAGTTTTAGTGAAAGCGTT
s cb4.chrX              21355230 38 - 21540570 ac--tttttgacaGGTCATTAAACGTTTGATAAAGACGTT
i cb4.chrX              C 0 I 1867
s caeRem4.Crem_Contig24   702076 37 -  1162296 ACGTTTTTTGACAGGTCAGGCCAGTTTCGATGAAAGT---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeSp111.Scaffold412    108222 1670 +   118955 I

a score=937.000000
s ce10.chrX               978570  98 + 17718866 TTTTTCTGCGGC-------GAGAACAAAGTTGAA----------AATTTTTTGGTTTTTTGGTAATGATAGACAGA--------------------AAAAATAACC------GGAGGGCAACGAACATTTTACTATAAAAA
s caeRem4.Crem_Contig24   702113 139 -  1162296 TTTAGAGgcggtggaggaggaggacgaAGTGCGAGTATGGGATGATTCTTTTGATTCTTTGGTA--GACAAATCGAATTGGAAAGTTgacgttctgaaaaatgattctgTTAGGAAGGAAACTgatgttttatttcaaaaa
i caeRem4.Crem_Contig24 C 0 I 1740
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21355268 1867 - 21540570 I
e caeSp111.Scaffold412    108222 1670 +   118955 I

a score=0.000000
s ce10.chrX               978668 1688 + 17718866  
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21355268 1867 - 21540570 I
e caeSp111.Scaffold412    108222 1670 +   118955 I
e caeRem4.Crem_Contig24   702252 1740 -  1162296 I

a score=478.000000
s ce10.chrX               980356 11 + 17718866 TTCTTCAAAGT
s caeSp111.Scaffold412    109892 11 +   118955 TTCCTCAAATA
i caeSp111.Scaffold412  I 1670 C 0
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21355268 1867 - 21540570 I
e caeRem4.Crem_Contig24   702252 1740 -  1162296 I

a score=1052.000000
s ce10.chrX               980367 22 + 17718866 AAAAAGTATTGCCATTCTTAGA--------
s caeRem4.Crem_Contig24   703992 30 -  1162296 AAAACGTGTTGCCAATCTAAAACATGATGG
i caeRem4.Crem_Contig24 I 1740 C 0
s caeSp111.Scaffold412    109903 22 +   118955 AACACATGTTGGAAAGCTGAAA--------
i caeSp111.Scaffold412  C 0 I 6
e caePb3.Scfld02_62       192273 2176 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21355268 1867 - 21540570 I

a score=7576.000000
s ce10.chrX               980389 54 + 17718866 CAGATTGCGATTGGTATAACTCAAGGTCGAGTCTTGCGGCGGCAAATAGTG-CGT--
s caeRem4.Crem_Contig24   704022 46 -  1162296 CAGAATGCGATAGGT--GTCCCAAGGTCGAGTCTC------GCAAATAGTG-CGT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    109931 48 +   118955 CATAATGCGATTGTT---CACCAAGGCCGAATCTT------GCTTATAGTGCCGCGT
i caeSp111.Scaffold412  I 6 C 0
s caePb3.Scfld02_62       194449 46 +   783054 CAGAATAAGATTGGT---CTCCAAGGTCGACT-TT------GTAAATAGTG-CGCGT
i caePb3.Scfld02_62     I 2176 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21355268 1867 - 21540570 I

a score=12871.000000
s ce10.chrX               980443 69 + 17718866 TCTTTTC---------------TTGC--------GTGTCGTCTGTCGTCAAATCCATATAAACTGTGTAGATTCCATCATGCACTAGTCCCC
s cb4.chrX              21357135 62 - 21540570 TCTTTGC---------------ATGC--------GTGTCGT------CCCAATTCATATAAATTGTCTAGATTCCATCtatctct-ctcttt
i cb4.chrX              I 1867 C 0
s caeRem4.Crem_Contig24   704068 78 -  1162296 TCTTTTCGGTTCACTTCTGACGACTT--------GTGTTGC------CTCAATTCATATAAATTGTCTAGATTCCATCGTGCACTACTCCGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    109979 88 +   118955 TCTTTTC-GTTGATTTCTGTCGACGCGTATGCGAGTGTGGCGATGGTTTCCATCCAAATAAATTGTCTAGATTCTATCGTGCACTACTC---
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       194495 73 +   783054 TCTTTTT-GTTCACTCATGTCGAAGT--------GTGTGACAACGTCCGTGATCCTTATAAATTGTCTA----------TGTACTACTCCTC
i caePb3.Scfld02_62     C 0 I 13
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-5649.000000
s ce10.chrX               980512 24 + 17718866 TTCCGTCC-GACACATACACACA----------TA-----
s cb4.chrX              21357197 33 - 21540570 ------ct-ctttctttttcctctcctttcatttctccct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704146 24 -  1162296 ------CTACATGCATCTTCCTC----------TCTCTTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    110067 19 +   118955 -----TCT-CGcgcattctcttt----------tt-----
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       194568 13 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=28377.000000
s ce10.chrX               980536  95 + 17718866 ------CATCC--CTACC-CGAAAATAGGCCATCG-GT-ACGGTGTAC----CGTCTATCTTGATTGTCTTTTCCACCTCTATTGTACGCATCCCTTTTCTCCA--CTTTTT-
s cb4.chrX              21357230 101 - 21540570 ccttctGACTCAACTACCTTGAAAATAGGCCATCG-AT-GTATTGTAC----CGTCTATCTTGATTGTCTTTTCTCTTTCA------TGCGTCCTTTTTCCTACTATCCCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704170  87 -  1162296 CCT----------CCACCTTGAAAATAGGCCATCGCATGGCGTTGTAC----CGTCTATCTTGATTGTCTTTTCTCCCTCA----------TCCTTTTTCCTAC--CCTTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    110086  90 +   118955 ------ctgccGGCAACCTTGAAAATAGGCCATCG-GA-CGGTTGTACCTCCCGTCTATCTTGATTGCCTTTtc--tctca----------tcttttttcttat--tttctt-
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       194581  88 +   783054 ------CATCC--TCACCTTGAAAATAGGCCATCG-TC-GCGTTGTAC--CCCGTCTATCTTGATTGTCTTTTCTGTGTGG----------TTCTCTTTCCCAT--CCACTT-
i caePb3.Scfld02_62     I 13 I 619
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-3901.000000
s ce10.chrX               980631 14 + 17718866 TGACGTACTTCAAT--
s cb4.chrX              21357331 13 - 21540570 --GGGGACTTTGTAG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704257 14 -  1162296 --TCAAACCATTCAAT
i caeRem4.Crem_Contig24 C 0 I 68
s caeSp111.Scaffold412    110176 13 +   118955 ---tataCTTCACGAC
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       194669 619 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-5154.000000
s ce10.chrX               980645 67 + 17718866 TTTGCC----------------------TTATAATTTTTATTGGTCTG-----TTCTACGACT--------TTTGAACACATGACAAAATTAGA-AATTTATT--
s cb4.chrX              21357344 54 - 21540570 ----------------------ACACCGTTACgttttttactgctttggatgagttttcgttt---------------------taaaa------aatgtttc--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    110189 99 +   118955 ATAACCATAACTGTAGCAGGACAAACAGTTGAA-tttttgcggttttt-----gtttttgtttatgaTAGGGTAATataattgacaaaaaaaacgaatattgCAT
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       194669 619 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeRem4.Crem_Contig24   704271 68 -  1162296 I

a score=-9012.000000
s ce10.chrX               980712 34 + 17718866 TTTTGAAATTAAA-----------------------------TTTTGGTTCGAAA-------AATTG------TGA-----
s cb4.chrX              21357398 29 - 21540570 ------------------------------------------ttcttgtttt----------aattgtttaTATGGTTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704339 19 -  1162296 ------------------------------------------ttctga--------------aattg------gagTTTGT
i caeRem4.Crem_Contig24 I 68 C 0
s caeSp111.Scaffold412    110288 77 +   118955 TTTTGAG--TGAATATTAAAAGCAACAAGCCTGAAACGTGTTTCCTTGtttgaaaacacaaaaattacTTCTATTCTTG--
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       194669 619 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=-8649.000000
s ce10.chrX               980746 19 + 17718866 ATTCACAACCTTTCCGAAA--------------------------
s cb4.chrX              21357427 19 - 21540570 CTTTGTAATTCCTTCCAAT--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704358 19 -  1162296 AACGGTATTCTTTTGctaa--------------------------
i caeRem4.Crem_Contig24 C 0 I 188
s caeSp111.Scaffold412    110365 35 +   118955 ----------ATTCTATGTGTGAAACGCAAACACttgattttatt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195288 12 +   783054 ----------attcacaatgtt-----------------------
i caePb3.Scfld02_62     I 619 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=49731.000000
s ce10.chrX               980765 135 + 17718866 ATTGCAGGTGTT--AAATCAAAT--AAATCATGGGAGTAGTGAACTTGGCTTTAACATTTGACGCAGTTTTCGCAGCTGTTTCCGGGCTTGCACTCTACTTCTTTCCCGGAAAATTCGGAGACTTGTGTTTTGTAAGTT
s cb4.chrX              21357446 137 - 21540570 TTTACAGGTAAT--ATATTAATAAGTGAACATGGGAATAGTCAAAGCGGCGTTAACATTCGACGCTATTTTTGCAGCTATCTCCGGAATAGCGTTATACCTTTTTCCGTCAAAGTTTGGAGACCTGTGTTTTGTATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   704565 135 -  1162296 ATTTCAGGTATT--GAATCACTA--CAATCATGGGTTTGGTAAAAGCGGCGCTGACGTTCGACGCAATATTTGCAGCGGTATCTGGACTTGCCCTTTATCTGTTCCCAGCTCAGTTTGGAAACTTTTGCTTTGTAAGTT
i caeRem4.Crem_Contig24 I 188 C 0
s caeSp111.Scaffold412    110400 137 +   118955 atttcaggTAATTTGAATCCTTT--TCGCAATGGGATTAGTCAATTGGGCTTTAACTTTCGATGCTATCTTTGCTGCAGTTTCCGGAGTAGCACTTTACCTGTTTCCCGATAAATTCGGAGATTTCTGCTTTGTTAGTT
i caeSp111.Scaffold412  C 0 I 26
s caePb3.Scfld02_62       195300 134 +   783054 -tttCAGGTGATTGGCAT--TGT--AAAATATGGGATTGGTGAGCTTGGCTTTAACATTTGACGGCATTTTCGCCGCGATTTCTGGTCTCGCACTTTATTTTGCACCAGGGTTATTTggaaacttttgttttgtgaGTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495    69074 52639 +   161274 I

a score=546.000000
s ce10.chrX               980900 1 + 17718866 T
s cb4.chrX              21357583 1 - 21540570 T
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig24   704700 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       195434 1 +   783054 T
i caePb3.Scfld02_62     C 0 I 26
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e caeSp111.Scaffold412    110537 26 +   118955 I

a score=216.000000
s ce10.chrX               980901 7 + 17718866 ATTGTAA
s caeRem4.Crem_Contig24   704701 7 -  1162296 ATTCTCA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       195435 26 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21357584 29 - 21540570 I
e caeSp111.Scaffold412    110537 26 +   118955 I

a score=0.000000
s ce10.chrX               980908 393 + 17718866 TATTTAATTTCTAAAGAGAGATTATTGTGGTCAATCTGTCAACCGAAACTGGAAAATTAATCCGGCACATGGTGGTATCTTCTACGTAGGAGAAAACAGACCACCAAATTTTTCTCGGCCACATAGAAAAAACCGTAATGTGGCGTGTTGTTTCAATGATTTTAAAATTATCTACTTGTTTCCTGATTTATTTGAAGAACAAATCTAGGTGCCTTGGAAAATTTGCTTATTTTTCTTTCTCTGTACTCTCGCAGTGTAACTTTTGAACCAAACTTTCAAACTATTAGAAAATGGTTTTTTCTCGATTTTTGGGAAAAAGTGATTTGCAAAATGGCATCAAATTTTTGCAAAATTTAATCAATTTTTGAAAAGATCATCAATTTTCCAAAGCTC
e caePb3.Scfld02_62       195435  26 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21357584  29 - 21540570 I
e caeSp111.Scaffold412    110537  26 +   118955 I
e caeRem4.Crem_Contig24   704708   0 -  1162296 C

a score=-31.000000
s ce10.chrX               981301 1 + 17718866 T
s caeRem4.Crem_Contig24   704708 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       195435 26 +   783054 I
e caeJap4.Scaffold17495    69074 52639 +   161274 I
e cb4.chrX              21357584 29 - 21540570 I
e caeSp111.Scaffold412    110537 26 +   118955 I

a score=1388.000000
s ce10.chrX               981302 16 + 17718866 GACTCTTTACTGCAAA
s caeRem4.Crem_Contig24   704709 16 -  1162296 GATTTCCTTCAacgag
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495   121713 16 +   161274 GATTCTTTTTTGTAAG
i caeJap4.Scaffold17495 I 52639 C 0
e caePb3.Scfld02_62       195435 26 +   783054 I
e cb4.chrX              21357584 29 - 21540570 I
e caeSp111.Scaffold412    110537 26 +   118955 I

a score=796.000000
s ce10.chrX               981318 9 + 17718866 CAAAATGGT
s caeRem4.Crem_Contig24   704725 9 -  1162296 aaaaataat
i caeRem4.Crem_Contig24 C 0 I 5
s caePb3.Scfld02_62       195461 9 +   783054 CAATATATC
i caePb3.Scfld02_62     I 26 I 1
s caeJap4.Scaffold17495   121729 9 +   161274 TAAAgaaat
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21357584 29 - 21540570 I
e caeSp111.Scaffold412    110537 26 +   118955 I

a score=-460.000000
s ce10.chrX               981327 1 + 17718866 -A
s caeJap4.Scaffold17495   121738 1 +   161274 c-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       195470 1 +   783054 I
e cb4.chrX              21357584 29 - 21540570 I
e caeSp111.Scaffold412    110537 26 +   118955 I
e caeRem4.Crem_Contig24   704734 5 -  1162296 I

a score=131450.000000
s ce10.chrX               981328 277 + 17718866 -----------------TTTTTTCAGCAAAAAGAGACTGATGGTGTGCACTGGCATCTTATCCGTTGTATCGGAGGACAAATCTTCGCCTCCTGTCTGGTCTCCCTCAAGTTTCGAGGATCTAGTCAAACGAGCCAATCAGTTTGTCATTTTATCCGATTAATTGTGAGTA----AC---TT-CTTGATTATCAGTAATGA----------TTTTCTAAAA--------------TTTCAGCCATCGATTCTCATTTTAATGCTGGTGCTTCAAATTCAATCGGTGACGCCAAACTTGGTGGAGCCAA----CGGTAA----------GATATCAGAGAA------
s cb4.chrX              21357613 286 - 21540570 -----------------tattttcagcaaaaagagACCGATGGAGTTCATTGGCATCTGATCAGATGTGTTGGAGGTCAGGTTTTTGCCTCATGCCTggtttcattcaaatttcgagGATCCAGCACGACAAGCCAATCTGTTTGTCATTTCATCAGAATGATCGTGAGTT--ATATCCATT-CGTGAtaacgaa----------------attttgaacacaTT-----TA---TTTCAGCCGTCAATCCTCATTCTGATGCTTGTTTTCCAAATCCAATCAGTCACGCCCACGTTGATTGAAAGCACGGTTCGTAA--------CGGATGTGGAAG--------
i cb4.chrX              I 29 I 21
s caeRem4.Crem_Contig24   704739 281 -  1162296 -----------------tttttctagcAAAAAGAAACCGATGGAGTCCACTGGCATCTTATCCGTTGCATCGGCGGTCAAATCTTCGCTTCGTGTCTTGTGTCTTTCAAATTCAGAGGATCAAGTCAAACAAGTCAATCTGTGTGTCACTTCATCCGACTTATTGTGAGTTTAATAT---TT-TGAGACAAT-------------------CTTTGGAacatatt-----tccttttttagcCATCCATCTTGATTCTTATGCTGGTGTTCCAAATCCAATCAGTCACCCCATCACTAATTGAACCAGCGGTACGT------------TATaatgaag--------
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold412    110563 302 +   118955 -----------------TCTTTTCAGCAAAAAGAAACCGATGGAGTTCACTGGCATCTCATCCGATGCATTGGGGGTCAAATCTTTGCATCTTGTCTTGTATCTGTCAAGTTCAGAAATTCTAGTCACACTAGTCAATCTGTGCTGCATTTTATTAGATTGatagtaagtttttttt---ttgcaaaatgaaaaaaaatgtggtGAATGATTTCCCGAAAATAGAA----TAGTTTTACAGCCATCTATTCTCATTCTTATGCTTGTCTTCCAAATTCAATCGGTGACTCCAACATTAGTGGAACCAA----ATGTAA--------TGAACTTTATAG--------
i caeSp111.Scaffold412  I 26 C 0
s caePb3.Scfld02_62       195471 275 +   783054 -----------------TGTTTTCAGCAAAAGGAAACAGATGGAGTCCACTGGCATCTCATTCGATGCATTGGTGGCCAAATTTTCGCTTCGTGTTTAGTATCATTCAAATTCAGAGGGTCCAGTCAAACCAGTCAATCTGTTTGTCATTTCATCAGGCTAATTGTGAGCATTGTAT---CT-TGAGATGACG------------------TTTTTGTAAATAATA----TTTCATTCCAGCCATCGATACTCATTTTGATGCTCGTCTTCCAAATTCAATCCCAGACTCCAAGTCTAGTGGAAACCA----ATGTGA----------------GTGg--------
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495   121739 313 +   161274 tttttttaattataatCCCATTTCAGCAAAAAGAGACCGATGGTGTTCACTGGCATCTCCTACGGTGCGTTGGTGGACAAGTGGCTGCTTCTTCCTTTGTTTCTtataaattcagaaattcccCTACTACGAGTCAAACAGTTTGCCATTTTACTCGCCTAATTGTGAGT----------TT-TAATGtagcaaa----------------attgaaaaagaagcaaaattaGCATTTCAGCCCTCAGTACTGATTTTGATGCTTATATTCCAAATCGAGTCGGAAACGCCAAATCTAGTCAATCCTA----AAGTGAGGAAAATATGCACATATGAG--taaaaa
i caeJap4.Scaffold17495 C 0 C 0

a score=-1936.000000
s ce10.chrX               981605 1 + 17718866 -T
s caeRem4.Crem_Contig24   705020 1 -  1162296 -t
i caeRem4.Crem_Contig24 C 0 I 14
s caeSp111.Scaffold412    110865 1 +   118955 -T
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195746 1 +   783054 -a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122052 1 +   161274 a-
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21357899 21 - 21540570 I

a score=-1826.000000
s ce10.chrX               981606 23 + 17718866 CTATCATTTATTTTTAAGCCATT
s caeSp111.Scaffold412    110866 23 +   118955 TTACGAGTTTGTTACAAAAAAGC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195747 23 +   783054 atagaaatattttttgaaaaaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122053 17 +   161274 ---ttatcattttttaGGCT---
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21357899 21 - 21540570 I
e caeRem4.Crem_Contig24   705021 14 -  1162296 I

a score=-1512.000000
s ce10.chrX               981629 7 + 17718866 TTCATTA
s caeRem4.Crem_Contig24   705035 7 -  1162296 ttgataT
i caeRem4.Crem_Contig24 I 14 C 0
s caeSp111.Scaffold412    110889 3 +   118955 TTC----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195770 7 +   783054 ttcattt
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495   122070 3 +   161274 TTA----
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21357899 21 - 21540570 I

a score=50259.000000
s ce10.chrX               981636 95 + 17718866 TTAGATTCTGAAATTTTTTAAATACCTGATGATCTCTACAATTACGCTCCATGTCACACTTCTATCATTTGCCGGATGGAAAACAGGTAACAAAC---------
s cb4.chrX              21357920 94 - 21540570 TCAGACactcaaattcttcaaatacCTCATGATTTCAACGATTGCTCTTCATGTTACATTGCTCTCAATCGCTGGATGGAAAACAGgtataaac----------
i cb4.chrX              I 21 I 206
s caeRem4.Crem_Contig24   705042 94 -  1162296 TTAGACcctgaaattcttcaaatatcTTATGATCTCCACCATCGCTCTCCACGTCACATTATTGTCAATTGCTGGATGGAAAACAGGTACATTT----------
i caeRem4.Crem_Contig24 C 0 I 26
s caeSp111.Scaffold412    110892 93 +   118955 -CAGACACTCAAGTTCTTCAAATATCTTATGGTCTCAACAATCGCTCTTCATGTTACACTTTTGTCCGTCGCTGGGTGGAGAACTGgttgaaac----------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195778 89 +   783054 tcagacactcaagtttttcaaatatcttatGATTTTCACTATCACACTTCATGCCAGTCTTTTGTCAATTGCTGGTTGGCAGACAGGT-----A----------
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17495   122073 93 +   161274 ttag----------ttctgaaatttttaatgatttcaaCTTTATTAACTCATGTCATTTTGCTTTCAAAATCTGGATGGAAAACAGGTAAACTA-TTTACAAAA
i caeJap4.Scaffold17495 C 0 C 0

a score=75095.000000
s ce10.chrX               981731 164 + 17718866 ATT------------------------AATTTTAAC-AAAACAAACA---------TTATTATAA-ACTTT-----------------------------TTTTACAGGAACAAGATTGCTCCCAGGAAACCGATTTGGAAATTTCTTGTATCAACTAGATGCACTCGCATCAATTTGCATTGGAACTACCTGGATGACTTTCCCAAAATGGCTTCTTCATCGACAGG
s cb4.chrX              21358220 207 - 21540570 attatttttaaaatctcaggTCTAGctgttttcaac-aaaaatggaa---------ttatTGGAG-AACTTTTGAGCAGTACTGTGCAATT---------TATT-CAGGCACCAAACTGATTGCTGCAaacaaatttggaaattttctttATCAACTTGATGCTCTCGCTTCGATTTGCATCGGAACGTGCTGGATGACTTTCCCGAAGTGGCTGCTTCATCGACAGG
i cb4.chrX              I 206 C 0
s caeRem4.Crem_Contig24   705162 219 -  1162296 acCACATGAAGAAACTTAGAT-------TTTTAAAG-AGATAAGAAAGAGACTCGCGTGTTGGTC-AATACCTTTGCATGTCTTAATGATTACAAAAAACTATTGTAGGTACCAAGTTGATTGCTGGAAACAAATTCGGAAACTTCTTGTACCAACTCGATGCTCTTGCTTCCATTTGTATTGGGAGTTGTTGGATGACATTTCCACAATGGCTGCTTCATCGACAGG
i caeRem4.Crem_Contig24 I 26 C 0
s caeSp111.Scaffold412    110985 159 +   118955 ---------------------------attttctag-CTATACCCAA---------TTCATCGGA-AAT-------------------------------AATTTTAGGAACAAAGTTGGCTGCGGGAAATAGATTCGGAAATTTCTTGTACCAGTTGGATGCATTGGCCTCAATATGTATAGGAACTTGTTGGATGACTTTCCCAAAATGGCTTCTTCATCGACAGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       195867 161 +   783054 ---------------------------ATACTCTAGAAGATGGGGAA---------ATaatagaataaa-------------------------------aattttaggaacAAAATTGGTTGCCGGTAACaagtttggaaactttttgtaCCAACTGGACGCACTGGCATCAATTTGTATTGGAGCTTGTTGGATGACTTTCCCAAAATGGCTGCTTCATCGACAGG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   122166 150 +   161274 ------------------------AGTATTT------AAATCAAACA---------GTGTT---------------------------------------TGTTTCAGGAACGAAACTAGCTGTTTCAAACGTGTTTGGCAATTTTCTGTACCAATTAGACGCACTTGCATCGATCTGCATTGGTGCTTGTTGGATGACCTTTCCCAAGTGGTTATTGCATCGACAGG
i caeJap4.Scaffold17495 C 0 C 0

a score=910.000000
s ce10.chrX               981895 1 + 17718866 T
s caeRem4.Crem_Contig24   705381 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    111144 1 +   118955 T
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       196028 1 +   783054 t
i caePb3.Scfld02_62     C 0 I 158
s caeJap4.Scaffold17495   122316 1 +   161274 T
i caeJap4.Scaffold17495 C 0 I 35
e cb4.chrX              21358427 0 - 21540570 C

a score=273.000000
s ce10.chrX               981896 1 + 17718866 A
s caeRem4.Crem_Contig24   705382 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    111145 1 +   118955 a
i caeSp111.Scaffold412  C 0 I 1261
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317 35 +   161274 I
e cb4.chrX              21358427 0 - 21540570 C

a score=100.000000
s ce10.chrX               981897 1 + 17718866 C
s caeRem4.Crem_Contig24   705383 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 I 71
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317 35 +   161274 I
e cb4.chrX              21358427 0 - 21540570 C
e caeSp111.Scaffold412    111146 1261 +   118955 I

a score=0.000000
s ce10.chrX               981898 680 + 17718866  
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317  35 +   161274 I
e cb4.chrX              21358427   0 - 21540570 C
e caeSp111.Scaffold412    111146 1261 +   118955 I
e caeRem4.Crem_Contig24   705384  71 -  1162296 I

a score=422.000000
s ce10.chrX               982578 33 + 17718866 TAGTTTTTGAGAAAGTCCACGAAAACGTATTCA
s cb4.chrX              21358427 33 - 21540570 TAGTTTTTGTCACACTTAGAAACAGATTGTCCA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317 35 +   161274 I
e caeSp111.Scaffold412    111146 1261 +   118955 I
e caeRem4.Crem_Contig24   705384 71 -  1162296 I

a score=696.000000
s ce10.chrX               982611 6 + 17718866 ATTCCT
s cb4.chrX              21358460 6 - 21540570 ATTATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    112407 6 +   118955 aTTCAT
i caeSp111.Scaffold412  I 1261 C 0
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317 35 +   161274 I
e caeRem4.Crem_Contig24   705384 71 -  1162296 I

a score=273.000000
s ce10.chrX               982617 1 + 17718866 A
s caeRem4.Crem_Contig24   705455 1 -  1162296 A
i caeRem4.Crem_Contig24 I 71 C 0
s caeSp111.Scaffold412    112413 1 +   118955 A
i caeSp111.Scaffold412  C 0 I 1
e caePb3.Scfld02_62       196029 158 +   783054 I
e caeJap4.Scaffold17495   122317 35 +   161274 I
e cb4.chrX              21358466 0 - 21540570 C

a score=230093.000000
s ce10.chrX               982618 334 + 17718866 TCCAGGTCCTTGTCGAGCTTGACGAGTCTCATGAATTCCTGGGAAGAGTCATGGGAGCTAACTTCATAGCGTCGTACATTGTCTCAACTCATGTTCTCCACTGGGAATCCGAACAAGACAGAAACGTGGCAGTTGACGGACGTGTCATTTGTTGCATTTCAATCCTTGGCGCCCAAATCTGGTCACAGACCTATGCCCACTGGTCCGGAAACCACTGGGTTGGAATTAGCCTCTTCTCCACATGGACTGTCATCTCCTTGATCTACCGCTCCTACCTAGTGTGCACCAAGAAA-----AGCCATAATAAAAAG-----GAATAATTTCTTAATT------ATTTTTTT-TT
s cb4.chrX              21358466 332 - 21540570 -TAAGGTTCTTGTCGAACTGGACGAATCCCATGAGTTTCTTGGGAGAGTGATGGGTGCTAACTTTATTGCTTCCTACATTGTATCAACTCATGCGCTGCATTGGGAGACAAACGAAGACAGATATGCTGCTGTGGATGGACGTGTCATCTGCTGCCTTTCAATTCTTGGAGCACAAATCTGGTCACAAACTTACAAGCACTGGTCTGGAAACCATTGGGTTGGCATCAGTCTCTTCTCCACATGGACCGTTATCTCCTTGATCTACAGGTCTTGTTTGACGTTCGCCAAAAATCATGTGCA------AAAGAA-----AAGTGAATAAATGCAT------AGTAGATT-TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   705456 341 -  1162296 TTTAGGTACTTGTCGAGCTTGACGAATCCCATGAGTTCCTTGGGAGAGTGATGGGTGCCAACTTCATTGCTTCCTACATTGTCTCCACACACGCTCTTCACTGGGAAACCAATGAGGACAGATACGCGGCGGTTGATGGGCGTGTCATCTGCTGCATTTCCATTCTCGGAGCACAAATCTGGTCTCAAACCTACGAACATTGGTCTGGAAACCATTGGGTTGGAATCAGCTTGTTCTCAACCTGGACTGTTATCTCTTTGATCTACCGTTCGTGTTTGACGTTTTCGagaagaca---gaa------aaaagattaGTAATTGACTAGATGCATTTAAACATAAGTTT-TT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    112415 317 +   118955 TTTAGGTACTTGTCAATCTTGACGAATCCCACGAATTTCTTGGAAGAGTGATGGGCGCCAACTTCATAGCTTCTTACATTGTGGCTACCCACGTCCTCCACTGGGAGTCACAACAAGATAGAAACGTGGCGGTTGATGGACGTGTCATTTGTTGTATTTCAATCCTTGTAGCCCAGTTCTGGTCACAAAAGTATCCGTCTTGGTCTGGAAATCATTGGGTTGGCATTGGGTTATTCTCGACTTGGACTGTTATCTCTGTAATTTATCGTATCTGCTTGACCATTTcgagaaag-----gga------aaaaaa-----gagt------------------agtAGATTATT
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       196187 316 +   783054 TTTAGGTACTTGTCGAGCTCGACGAATCCCATGAATTTCTTGGGAGAGTGATGGGTGCCAACTTCATTGCCTCTTACATTGTCTCCACACACGCACTCCATTGGGAATCACAACAAGACCGTTATGCTGCCGTTGACGGACGTGTCATTTGCTGTATTTCTATTCTTGGAGCTCAAATCTGGTCTCAAACATATGAACATTGGTCCGGAAACCACTGGGTTGGAATCAGTTTGTTTTCTACATGGACAGTCATTTCACTGATCTACCGTTCATGTTTGACTTTCTCGAGAAAA-----GGATCTGTTAAGAAA-----GAAT------------------AG-------tt
i caePb3.Scfld02_62     I 158 C 0
s caeJap4.Scaffold17495   122352 328 +   161274 TTTAGGTGCTTGTTGAACTTGACGAATCTCACGAGTTTTTGGGCAGAGTGATGGGTGTTAATTTCATCGCTTCTTATATTGTATCGACACATGCCCTTTATTGGGAGTCTGAGAAAGACCGTAATGTAGCTGTTGATGGTCGAGTGGTTTGCTGTATTGCTATTCTTGGTGGACAAATATGGTCACAAACGTATCAACACTGGTCAGGAAATCATTGGGTTGGGATCAGTCTGTTTTCGACGTGGACAGTTATTGCTTTGCTTTATCGCTCGTATTTGACATGGAACaaaaaa-----aCG------CGTCGC-----GATTAATTTGACATCT------AGTTTTTA-TT
i caeJap4.Scaffold17495 I 35 I 7270

a score=-36784.000000
s ce10.chrX               982952 183 + 17718866 CTAATTTGCTGGTTCTGTTTATCTCAAGCTTTCTGTGTTATTGAAGAGAAATCAATAAAAATGCATTACAATTTTATTATAGAAAACATCAAATAAAATAAATAT-------TGAACTGTT------------GTAAAAAATTAAATTTACAATCAAGAATGGAGTAGCACCGGAAATGAATTTTTTTGAAATTTTCTGAAA---------
s cb4.chrX              21358798 152 - 21540570 CAA------TGTTTTCGT---CCCCATGATTCGTG---------------------TAAGAAGCATTTTaact--attcttt------ttttcccagatAAATACATTCATACAAATCGTT----------TCACAAATAAATAAGACACAAAATACAGATG--TTACACTTAAACATGCGAACAAATatgattgtctgaaa---------
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig24   705797 167 -  1162296 CAG------TGGTTT-------CTAATGATtctcgaatt-------------tcgaaaaaaagtatttctgtttcatgctTTGAACTGTCCTCACCaattaaaac-------caaatttttcttgttaaaatcagaataaaataaattaaagtttacaaatgactaaaaatcaaaaaaaaattaaaatatga--atctgaaa---------
i caeRem4.Crem_Contig24 C 0 I 90
s caeSp111.Scaffold412    112732 141 +   118955 CG--------GATCT-------Ccggtcattttt---tt---------gaaatagtgaaaaaaaatcagtat---aTTTTAT--------------AATAAACGT-------TGAACATTT-----GAAgat----gacaaaaaatatgaaaaatgtgaaag--aaaagagagaaaacgaaaaatagtttta----gtgaaa----cgaaa
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       196503 120 +   783054 c-----------tct-------cattttatttttatatt---------gcAATAGTGAATAAATA----------AACTTAT--------------AGTTAAATT-------TTAAGCTTT----------------ATAATCAgaataatacattt-------------ttgaaaatgagagatatcgttt----ctgaaaaatgccaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I

a score=-4729.000000
s ce10.chrX               983135 97 + 17718866 TTTTTTTCAGAAAGTGCAGATTTTTGCTGCTGAAAATTCTTTCCCGCTGGCGCTACCCCACCTTCAATTTTAAAAAAATAAAATGTGTCCAGGCTCA
s caeSp111.Scaffold412    112873 46 +   118955 ----acctggaga-------------------aacAACAGTTATTA---GCgtg-----atattca-----aaaaaaa---------------ctca
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       196623 39 +   783054 ----tttcaaaca-------------------aaaattgtttattacGGGAGTGA----ACATTCA-------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21358950 42 - 21540570 I
e caeRem4.Crem_Contig24   705964 90 -  1162296 I

a score=1346.000000
s ce10.chrX               983232 18 + 17718866 TCAAAACGTTAATTTTGA
s caeRem4.Crem_Contig24   706054 18 -  1162296 TTAAATCATAATCTTTCA
i caeRem4.Crem_Contig24 I 90 C 0
s caeSp111.Scaffold412    112919 18 +   118955 tcaCTTCATTGTTTTTGA
i caeSp111.Scaffold412  C 0 I 16
s caePb3.Scfld02_62       196662 17 +   783054 -CTTTTCTTTGATATTAA
i caePb3.Scfld02_62     C 0 I 27
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21358950 42 - 21540570 I

a score=29.000000
s ce10.chrX               983250 1 + 17718866 T
s caeRem4.Crem_Contig24   706072 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 I 6
s caePb3.Scfld02_62       196706 1 +   783054 T
i caePb3.Scfld02_62     I 27 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21358950 42 - 21540570 I
e caeSp111.Scaffold412    112937 16 +   118955 I

a score=-4344.000000
s ce10.chrX               983251 25 + 17718866 -ATGA--------GATCTAATTTTTTAAAAAGTT-----
s cb4.chrX              21358992 22 - 21540570 -ACGG--------GATCTAA-----TGAATCATGgg---
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig24   706079 25 -  1162296 -TTCG--------TTTCTAT-----TGTAAAGTGagtgt
i caeRem4.Crem_Contig24 I 6 C 0
s caePb3.Scfld02_62       196707 29 +   783054 ATTGGGAATGATTGTTgtga-----tgaaaattt-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeSp111.Scaffold412    112937 16 +   118955 I

a score=41304.000000
s ce10.chrX               983276 181 + 17718866 AAATTCTGAAAAATGTA----AAAACCAAAATAAATAAAA--------------CTAGAATCTTTTATGATTCTTTTTTGCGAGTTTCACTAAAATATTCCGTTTTTCGCTCAGAAATTCTTGTTCCGGGGATGCCAGCGG---AGCTTCGTCGCATTTTGATTTACTGCTCCCTAAGTTGCTGGACCTTCTGAAATTCTGT--
s cb4.chrX              21359014 167 - 21540570 --------agaa---------attttcagtaaaaat------------------ttagTGACGTCTGCAATGTAACCTCGCGAATCTCATGAGAACACTGCGACTTTCGGCGATAAATTCTTGTTCAGGTGACGCAAGAGGAGCTGCTTCGTCGCATCTTGATCTACTACTTCCAGAGTTGCTGGAGCGTCTGAAACCATGT--
i cb4.chrX              C 0 I 507
s caeRem4.Crem_Contig24   706104 183 -  1162296 aaa----aaaaa---------aagacccCTAAAAATCCGAGTCCAAGAATCCAACTAGTGTCGTTTCTGCTGTTTCTTTGTCAATTTCACCAGAATATTCCGCTTTTCACAAAGAAATTCTTGTTCCGGTGACGCCAATGG---TGCCTCGTCACATCTCGATCTGCTGCTTCCCAAGTTACTGGACCTTCTGAA---ATGT--
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold412    112953 176 +   118955 --------AAAATCGAG----AAcatgtaaaaaaaaatggt-------------tcatGGCCGCTTATTATGTTTTTTGGCAAGTTTAGCTAGGATGTTTCGCTTTTCACTGATAAATTCTTGTTCTGGTGATGCAAGTGG---TGCTTCATCACATCTGGATTTGCTGATACCAGAATGGCTGCAATATCTGGGAAGATTTGG
i caeSp111.Scaffold412  I 16 C 0
s caePb3.Scfld02_62       196736 180 +   783054 -gg----aaaaaatgtgtttaaaaatcacgaaaaactTGTC-------------CTAATTACGTTTATGATGCATTCTCGCCAATTTCGACAAAATACTCCGTTTCTCGCCGAGAAACTCCTGTTCTGGAGATGCCAAAGG---AGCTTCCTCACACTTAGA---ACTGCTTCCCAATGGGCTGAAACTTTTGCGTTGGTGTGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I

a score=-8377.000000
s ce10.chrX               983457 29 + 17718866 --TC---CTTTTCCAT----------------TTTCACCA-------------ACAATTCCCT
s caeRem4.Crem_Contig24   706290 34 -  1162296 ACTC---TTTCTGGAG------GGGTATCCAACGTCGACA-------------ACT-------
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold412    113129 19 +   118955 ATTCCCAGTTTTTAAG-------------------------------------ACC-------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       196916 51 +   783054 AT-----GTTGTTCAGATTGTTGTACAATTAATTTTAGCACGTGTTATGCCCAACT-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21359181 507 - 21540570 I

a score=45364.000000
s ce10.chrX               983486 87 + 17718866 TACCTATGTGTTGAATTCTTGTGGTGAGACTCTTTTCTGTGTGCCGAACTTTCTCTATTATTCGGTTTGTAGAGCATTTGGGCCTGA
s cb4.chrX              21359688 87 - 21540570 TACCtatttgttgagtttttgtgCTGTGGTTCTTTCCTGTGAGTCGAATTATGGTTGTGGTGTGGCTTGTAGAGCATTTGAGCCTGA
i cb4.chrX              I 507 C 0
s caeRem4.Crem_Contig24   706324 87 -  1162296 TACCTATGAGTGGAATTTTTGTGTTGTGACTCTTTTCTCTGCGCAGAGCTATGATTGTGGTTAGGTTTGTAGAGCATTTGAGCctga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    113148 81 +   118955 TACCTATGAGTCGAGTTTTTATGTTGAGACTCTTTCCTGTGAGTGGAACTATGGTTG------GGTTTGTAGAGCATTTGAGCCTGA
i caeSp111.Scaffold412  C 0 I 45
s caePb3.Scfld02_62       196967 81 +   783054 TACctatttgttgaatttttgtgcTGCGAATCTTTCCGTTGTCCTGGATTGGGATAG------GGCTTGTAGAGCATTTGTGCCTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I

a score=-2269.000000
s ce10.chrX               983573 6 + 17718866 ATACAT----
s cb4.chrX              21359775 6 - 21540570 ----ATCATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   706411 3 -  1162296 ----gtt---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       197048 6 +   783054 GAATAT----
i caePb3.Scfld02_62     C 0 I 360
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeSp111.Scaffold412    113229 45 +   118955 I

a score=-2971.000000
s ce10.chrX               983579 66 + 17718866 ATTTTGTAGTTTTTCAACACATTTCTGAAATATAAAATTCTGGGTGTTATTATTTTTTACACAGAC
s cb4.chrX              21359781 52 - 21540570 ATTATGATG------AAGA--------AAATACGTTAGTTTGGTTAGTATTTTCTCatacacaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   706414 20 -  1162296 -ttttga-------------------------------------------ttttttgtccaGAG--
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeSp111.Scaffold412    113229 45 +   118955 I

a score=-3050.000000
s ce10.chrX               983645 160 + 17718866 ATTTTGTAGTAAAATGAATCTGAAGACATGTGGCACAGGGAATTCAACATTCATGAAATTTTTTTAAGGAGCAAATTAATTCCCATTTCGATGCCAGTAATTGACATTCAGAAAATATCTCTAGTTAGCCACTCATATCTCGTTAGATGTCAGTTTTTTG
s caeRem4.Crem_Contig24   706434  49 -  1162296 GTTTT------------------AGATACG------------TTC-------------------------GTAACTTCCTCCCCA------------------ACATT----------------TTA---------------------GTCAAttcttt-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21359833   0 - 21540570 C
e caeSp111.Scaffold412    113229  45 +   118955 I

a score=285.000000
s ce10.chrX               983805 26 + 17718866 TTTCTTTTCCCATTTTTGATGAATTA
s cb4.chrX              21359833 21 - 21540570 tttttttacccTTCCGTGACG-----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeSp111.Scaffold412    113229 45 +   118955 I
e caeRem4.Crem_Contig24   706483  0 -  1162296 C

a score=31318.000000
s ce10.chrX               983831 207 + 17718866 ATTTTCTAGACTCTGAAA-------ATGCACACATTGCTCACAAACACGAAAGACAAAAAATTGACAAGAAAACatttttaatttaaaaaaatttaCTAGTTGTTTCATGATGATGAAAGCTGAACTTAAATAATAACATACCAAAAGAAAAGAAGAACATCAAATTTACGACAATGCCAAGACAAATACTAT--AAAAAAGTTGTGTGGAAAGAG
s cb4.chrX              21359854 176 - 21540570 -----CTAAATTCAACAA---------GCACAAATTGCACACAATCAC----------AACTCAaccgaaaca--tttttaattt-aaaaaatttactaTTAGTTTCAGATTGTCAAAAGCTGAACTCA---AGGAACATACCAA---ATAAAAAAGACATTGAAATTACGACAAAGCCAAGCCAAGTActaa--aag-----tttgagaaaaggg
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig24   706483 173 -  1162296 ------taaataaaaaaaaagaaaaatgcatACATTGCGCACAACCAC---------AAACTCAACagaataa----tttaattt-caaaaatttactattAGTTTCAGA-TGATGAAAGCTGAACTTA---AGTAACATacc---------aaaaaacatcaaatttacGACAAAGCCGAGCCAAGTACTAA--AAA--------GAGGGACGGG
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold412    113274 155 +   118955 ACTCTCTGGGTCCAAAGA--------CGCGTACATTGCACACAACcac----------aat----------------ttt--tcc-aaaaaatttactATTAGTTCAA---TGATGAAAGCTGAACTAA---AATAACATACC----------AAAAACATCAATTTTACGACAAAGCCGGGCAAATTactaaataaa--------aagaaacgag
i caeSp111.Scaffold412  I 45 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I

a score=364.000000
s ce10.chrX               984038 32 + 17718866 ATCA-----TGATTGCAATAATTTTGCTTGAAATAAT-
s caeRem4.Crem_Contig24   706673 31 -  1162296 ATCA-----TGAATACAAATTATTTCTT--GACGTATT
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold412    113429 37 +   118955 aTCAAATATTGAATACAAAACGTTTCTCAGGAATTAT-
i caeSp111.Scaffold412  C 0 I 70
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21360030 85 - 21540570 I

a score=99.000000
s ce10.chrX               984070 72 + 17718866 AAAGAAAAAAAAAGTTTTTCTGCGA------TTTGTTTCACGAGGTTCTGAA--------TATAAGAACAAATGGAATGGAGCAAA
s caeRem4.Crem_Contig24   706704 83 -  1162296 ACTTAAGAGAA---TTTTGTTGagattgtttttcttttcaaaacattttgaaaaaagaagtgtgaGGACATGTGTGGTAGTAAATA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21360030 85 - 21540570 I
e caeSp111.Scaffold412    113466 70 +   118955 I

a score=0.000000
s ce10.chrX               984142 425 + 17718866 ACGGATAAAAATTGGGACTATTTGATTTATAAATATTCAAATATTCTGATCATAATGATAAATTAACTGATTAAATTTATAAGGGCACTGACCAACTTCATAATTGCACTGACCAATATCATAATTGCACTGACTAATTTTATCAGTGCACTAACCATTTTTATCATGGCACTGACCAAAATAAGAATTGCCATGGACAAATTTATCATTGCGCTAACTAAAATTATTAACTCATTGACAGTTTTTCAAGAATTTTGAAATCATAAGTGTTAGCTTAAAAATTAATAAAACTTCCGTGGCTTTGAAAACTTAGGGTCACAACAAAAATAGTGTTGAAACTTTTAAAATGTATAATTAGATACCCGTTTTTACCCGTTTCGCCCACATTTGCCCGCAAAAAACGCAATGGACAGGATGAAAATGAT
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e cb4.chrX              21360030  85 - 21540570 I
e caeSp111.Scaffold412    113466  70 +   118955 I
e caeRem4.Crem_Contig24   706787   0 -  1162296 C

a score=410.000000
s ce10.chrX               984567 8 + 17718866 TGAAAGAT
s cb4.chrX              21360115 8 - 21540570 TGAAAAAG
i cb4.chrX              I 85 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeSp111.Scaffold412    113466 70 +   118955 I
e caeRem4.Crem_Contig24   706787 0 -  1162296 C

a score=1208.000000
s ce10.chrX               984575 19 + 17718866 Tgaaagagagagagagaga
s cb4.chrX              21360123 19 - 21540570 TAAAAGGCAATGAGTTGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    113536 19 +   118955 TGAAAGAAAGGAGGACATA
i caeSp111.Scaffold412  I 70 C 0
e caePb3.Scfld02_62       197054 360 +   783054 I
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeRem4.Crem_Contig24   706787  0 -  1162296 C

a score=-3042.000000
s ce10.chrX               984594 36 + 17718866 ------gagag---agagagagagagagagaagaaa--gagTATTCA
s cb4.chrX              21360142 38 - 21540570 TATAAGGACATAAAgggggatgggggaggggTAAAGAT---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    113555 22 +   118955 --------------GGGAgggggggAGGGCttgaaa-----------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       197414 27 +   783054 ------Gacac---aaaaaataggaaagagAGGAAA-----------
i caePb3.Scfld02_62     I 360 C 0
e caeJap4.Scaffold17495   122680 7270 +   161274 I
e caeRem4.Crem_Contig24   706787  0 -  1162296 C

a score=91.000000
s ce10.chrX               984630 1 + 17718866 T
s caeJap4.Scaffold17495   129950 1 +   161274 T
i caeJap4.Scaffold17495 I 7270 C 0
e caePb3.Scfld02_62       197441 0 +   783054 C
e cb4.chrX              21360180 0 - 21540570 C
e caeSp111.Scaffold412    113577 0 +   118955 C
e caeRem4.Crem_Contig24   706787 0 -  1162296 C

a score=194836.000000
s ce10.chrX               984631 244 + 17718866 TCAGAGAAAAGCGTCGCCTTCCTCATCAGAATCCGCAGCTGTATTGTCGGGCGTCGTTTTGCCATGATTTGGGTCGCCGAGTGTTGATGGCACTCCGAGTGGTCCTGACATTGACTCGGATGTCTCCGGATGCGGATGAGTTAGAGATGTGGCATTTGTGGCGCCTCCGCGTCGCGACTTTTTTGCTTTTTTCAACATTTGTGCCTGT-AATTAGACTCA-ATTTGTACTGCACTAAAGCGAAGCT
s cb4.chrX              21360180 245 - 21540570 TCAAAGAAAAGCATCGCCTTCCTCATCTGAATCTGCGGCAGTGTTATCTGGAGTCGTTTTCCCGTGATGCGGATCGCCGAGTGTCGATGGCACACCGAGCGGCCCCGATAGCGGGTCGGATGTCTCCGGGTGCGGCTGTGTAAGGCAAATTGTGGTAGCGGTGCCACCTCGACgtgattttttggcttttttcaacatttgcGCCTGCAAATTAGACTCA-ATTGATACTGCACTGAAGCGAAGCA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig24   706787 244 -  1162296 TCAGAGAAAAGCATCGCCTTCCTCGTCAGAATCCGCGGCAGTGTTATCTGGAGTCGTTTTTCCATGATGTGGATCACCAAGTGTTGATGGTACACCCAATGGTCCGGATAGTGATTCGGATGTTTCCGGATGCGGTTGGTTTAGGCCACTTGTTGTGGCATTGCCACCGCGACGTGactttttggcttttttcaacatttgcGCCTGT-AATTAGACTCA-ATTGATACTGCACTGAAGCGAAGCT
i caeRem4.Crem_Contig24 C 0 I 19
s caeSp111.Scaffold412    113577 241 +   118955 tcagagaaaagcATCGccttcttcatctgaatctGGGGCAGTGTTATCTGGAGTCGTTTTTCCGTGATGCGGATCACCAAGAGTCGATGGAACTCCGAGTGGTCCCGACAGTGGGTCTGATGATTCT---TGGGTATGCGACAAGAGAGATGAAGTAGCGTTGCCTCCGCGACGTGactttttcgcttttttcaacatttgtGCCTGT-AATTAGACTCA-ATTGATACTGCACTGAAGCAAAGCT
i caeSp111.Scaffold412  C 0 I 25
s caePb3.Scfld02_62       197441 238 +   783054 TCATAGAAAAGCGTCGCCTTCCTCATCTGAATCTGCGGCAGTATTATCTGGAGTCGTTTTTCCGTGTTGTGGGTCCCCGAGTGTTGATGGAACACCCAATGGCCCCGAAAGAGGATCGGTTGTGTCT---TGTGCTTGATTCAAAAG---CGAAGAAGCGTTGCCTCCGCGACGtgacttttttgcttttttcaacatttgcGCCTGT-AATTAGACTCA-ATTGATACTGCACTGAAGCAAAGCT
i caePb3.Scfld02_62     C 0 I 1224
s caeJap4.Scaffold17495   129951 232 +   161274 TTAGAGAAAAGCATCTCCTTCTTCGTCAGAGTCACCGGCATTGTTTTCAGGTGTTGTTTTTCCGTGATGAGGATCACCGAGTGTAGAAGGAACGCCTAATGGTCCAGAAAGAGAATCCGAACATTCAGGATTTGGTTGTGAAATTACAGTTG---------TACCTCCTCGTCGTgtcttttttgctttttttaacATTTGCGCCTGC-AAAACGACACATATTGA----GCACTCAAGCCAAGCT
i caeJap4.Scaffold17495 C 0 C 0

a score=-1931.000000
s ce10.chrX               984875 6 + 17718866 ---GATAAA
s cb4.chrX              21360444 6 - 21540570 ---AAACGG
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24   707050 6 -  1162296 ---agaaag
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold412    113843 6 +   118955 ---GGGAAG
i caeSp111.Scaffold412  I 25 C 0
s caeJap4.Scaffold17495   130183 6 +   161274 TTCAAA---
i caeJap4.Scaffold17495 C 0 I 2172
e caePb3.Scfld02_62       197679 1224 +   783054 I

a score=8910.000000
s ce10.chrX               984881 223 + 17718866 AATTGGGGTGG------------------TGTC------------------AAATGGAAGAAAAAATAATATATA----AAATTCG---ATTA--CC-------------------------ACGATTT-------------TAGAGCAGGGTGGTGGGGGGAA---ACAAATTGCGTGA---ATGCAGCGCAAATTAGAAAATTTAAAATATTCACAGAGTCACATCAAT-------AAAATAAG--ACAATATGATGACGTCACTAGGACA-TGGAGCCGCAGC-----GAAATAATAACATGTCAAATTATAAATTGTAAAGAA
s cb4.chrX              21360450 264 - 21540570 GAATGAAAAGGGGATAAATTCGATACTTGCGTCAATTCCTCATATATTTTTAAACAGAAAAGTGGA-------------AAACTTATATACCATTCCGGTTATTCTCATTA-------TATTACAGACT-------------TATATTGTGGAAATGTGTGA-----GAATGTGACAT-----ATGCAGCGCAAATT-AAAAGTTTGGAAGA-TCACGGGTTCACatcaataaaattgaaaataaa--acaatatCAGCACGCCATTGGGACA--GGAGCGACagc-------aaaaatatta-----aattttaaCT--CAAAGAA
i cb4.chrX              C 0 I 839
s caeRem4.Crem_Contig24   707056 272 -  1162296 --atggGACGGGCGTTATGGGGGCAAAAGAGTC---------TATAGGTTTCATTCGaaacgaaaatgaaattggGAATAAACGTTTTTGTTA--CCAATTAAtttcttga-----------agaaaat-------------tgaagggGGGAcataaggaaaa--gaaaaatggcgTGTATGATGCAGcgtaaattaaaaaatttggaaaattcacAGAGTCACATCGATA------AAAATAAG--ACAATATGATGACGTCACTGGGACA---GAGCTGCAgcagaaaataagaataataaG---AATTTGAAAC--CAAGAAA
i caeRem4.Crem_Contig24 C 0 I 34
s caeSp111.Scaffold412    113849 258 +   118955 AGATGAGATGG-------------AACTGCGTG----------------------GGAAGattaactga----------aaattta---gCTA--CCAATTAATTTCGTGGGCaaatttctcagaaattgaCTTTTGggtaataaaaatgagaaatgagtgCGGTCAGTAAATGGCGTGTATGATGCAgtacaaataaaaataattcagaaattaaCAGATTCAcatcaatg------aaaataagGAACGATATGTTGACGTCACTTAGACATAGGAGCTGCAGC--------AGAAAAACATG---TTTGTTAACA--AAGGGAA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       197679 1224 +   783054 I
e caeJap4.Scaffold17495   130189 2172 +   161274 I

a score=-2964.000000
s ce10.chrX               985104 43 + 17718866 ACTTAGTTTT--------AAAACAAAATGCCCCAGGTTATTTTTTTTTGTA----------
s caeRem4.Crem_Contig24   707362 48 -  1162296 -----gtttttttcacaCAGAAAAAAGTGC--------ATTATTCCAGAAAATACCTATTA
i caeRem4.Crem_Contig24 I 34 I 17
s caeSp111.Scaffold412    114107 32 +   118955 ACTCAGttttcct--------------tcc--------atttttttaaactacg-------
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       197679 1224 +   783054 I
e caeJap4.Scaffold17495   130189 2172 +   161274 I
e cb4.chrX              21360714 839 - 21540570 I

a score=-626.000000
s ce10.chrX               985147 12 + 17718866 TTTTCAATTT--TT--
s cb4.chrX              21361553 14 - 21540570 TTTTCAATCAACCT--
i cb4.chrX              I 839 C 0
s caeRem4.Crem_Contig24   707427 12 -  1162296 GTTTTGTTCA--TT--
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold412    114139 14 +   118955 ttttcgaatt--tttt
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       197679 1224 +   783054 I
e caeJap4.Scaffold17495   130189 2172 +   161274 I

a score=182.000000
s ce10.chrX               985159 2 + 17718866 TT
s caeJap4.Scaffold17495   132361 2 +   161274 TT
i caeJap4.Scaffold17495 I 2172 C 0
e caePb3.Scfld02_62       197679 1224 +   783054 I
e cb4.chrX              21361567 0 - 21540570 C
e caeSp111.Scaffold412    114153 0 +   118955 C
e caeRem4.Crem_Contig24   707439 0 -  1162296 C

a score=-9421.000000
s ce10.chrX               985161 24 + 17718866 TTCGTTAGGAAAACTG--TTTAAACG----------
s cb4.chrX              21361567 15 - 21540570 TCTGTAAG-----------ACAAACA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   707439 16 -  1162296 TTAGTAag----------tttcaaca----------
i caeRem4.Crem_Contig24 C 0 I 455
s caeSp111.Scaffold412    114153 12 +   118955 -tactcaa-------------aaaaa----------
i caeSp111.Scaffold412  C 0 I 7
s caePb3.Scfld02_62       198903 13 +   783054 ttaattag-------------aaaaa----------
i caePb3.Scfld02_62     I 1224 I 5
s caeJap4.Scaffold17495   132363 23 +   161274 -------------TTGAATATGAAAATTCGTGAACT
i caeJap4.Scaffold17495 C 0 C 0

a score=80966.000000
s ce10.chrX               985185 144 + 17718866 TACTTTCAAAGCTGATTTCAATATTGTGATAGTTCCCGGTGGCTGGATATGAGGTTCGCCGTCAACTTGAACCGGCCATTCTTCATGTGTAGTAATTCGGATCTGGAA-------AACTCAAAAAATAATATGCTGGG----GAAAAGTGG--------AGAA
s cb4.chrX              21361582 142 - 21540570 TACTTTCAATGCTGATTTCAGAATGGTTATAGTGCCTGGTGGTTGAATGTGTGGTTCTCCGTCTACTTGTACTGGCCATTCTTCGTGTGTTGTGATGCGAATCTG----------CATTTTTCGAAGTAATT-----------ATTATTGAACATTTTATGAA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   707910 136 -  1162296 TACCTTCAAAGCCGATTTCAGAATTGTTATAGTTCCAGGTGGTTGGATATGAGGTTCACCATCAACTTGAACCGGCCATTCTTCGTGTGTTGTAATACGgatcta----------aatttttcaaa-----------------aatattgatctTACATTGAA
i caeRem4.Crem_Contig24 I 455 I 9
s caeSp111.Scaffold412    114172 141 +   118955 tACCTTCAGCGCTGATTTTAATATCGTTATCGTTCCTGGAGGTTGGATATGTGGTTCACCGTCAACTTGTACCGGCCATTCTTCATGTGTTGTTATTCGAATCTGAGG--AAAGGCATTTAAAATAGGAA-------------AACAACCA-------TAGGA
i caeSp111.Scaffold412  I 7 I 1
s caePb3.Scfld02_62       198921 146 +   783054 TACTTTCAAtgcagatttcaaaattgtgatAGTTCCAGGTGGTTGAATATGCGGTTCTCCATCTACTTGCACTGGCCATTCTTCGTGTGTTGTTATACGAatctgaaa--catgaaatttggTGGATAAACTGC--------GAATAGTGA-------ttgaa
i caePb3.Scfld02_62     I 5 I 143
s caeJap4.Scaffold17495   132386 147 +   161274 CACTTTTAATGCTGATTTCAAAATGGTAATTGTTCCCGGAGGTTGAATATGTGGTTCACCATCTACTTGAACTGGCCACTCTTCATGTGTTGTAATGCGTATCTgtaataaaagaaaatttgcATAGTTTTTTGCGTATTTTAAATA----------------
i caeJap4.Scaffold17495 C 0 C 0

a score=88234.000000
s ce10.chrX               985329 94 + 17718866 CTTACACTTCCACCTTGAGCTATCCTAATTCCCGCGGCGAGCTTGGATTGGATGAGTCCCAGGCGTGATACATCGGATATTCCGACCACC--TGAA
s cb4.chrX              21361731 94 - 21540570 CTTACACTTCCTCCTTGCGCTATCCGAATGCCAGCAGCAAGTTTGGACTGAATAAGGCCTAAGCGAGATACATCGGAAATACCAACAACC--TAAA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig24   708055 94 -  1162296 CTTACACTTCCACCCTGAGCTATCCGGATTCCAGCAGCAAGTTTCGACTGGATAAGACCCAAACGAGAGACATCGGATATTCCAACGacc--tgaa
i caeRem4.Crem_Contig24 I 9 C 0
s caeSp111.Scaffold412    114314 94 +   118955 TTTACACTTCCGCCTTGTGCTATCCTAACTCCTGCTGCAAGTTTTGATTGGATGAGCCCTAACCGAGATACATCAGAAATTCCGACGACC--TAAA
i caeSp111.Scaffold412  I 1 C 0
s caePb3.Scfld02_62       199210 94 +   783054 CTTACACTTCCGCCCTGAGCTATCCGAATTCCTGCAGCAAGTTTTGATTGGATGAGTCCAAGCCGAGATACATCGGATATTCCAACCACc--tgga
i caePb3.Scfld02_62     I 143 I 37
s caeJap4.Scaffold17495   132533 96 +   161274 CTAACACTCCCTCCTTGTGCTATTCGAATGCCGGCAGCAAGCTTTGATTGAATGAGGCCAAGACGTGAGACATCGGAGATTCCAACAACCTTTGAA
i caeJap4.Scaffold17495 C 0 C 0

a score=-3049.000000
s ce10.chrX               985423 10 + 17718866 -TTTAGAGATT
s cb4.chrX              21361825 10 - 21540570 -CAAAAACATT
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold412    114408  2 +   118955 --------AT-
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495   132629 10 +   161274 ACAAAACAAG-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       199304 37 +   783054 I
e caeRem4.Crem_Contig24   708149  0 -  1162296 C

a score=-25230.000000
s ce10.chrX               985433 286 + 17718866 ATTAAAGGGAATTTTTAGAGAAA---GGTTAAGTAATTTAATTGTCAAAGGATATAT----AATAGT-----------------------TATTGCTAATGA-----------------CTGTCTTCTTATTT----------------------------------------------------------------------------------TTCCGAAAAATTTT---------CTAAGCCTCTGT----------------ACAATTTCACA-------------------------------------------GTCGTCTACAACAGTTGCTTTAAAGGAAATTAATAAAATTACAAAG--------TTTTTGATCATATCAGTTCACTTCTTTCATCCATTGGTAGGCTGTCATTTATGAATG-------CAACATATATGTAAATTAGAAAATTTTGATATC---------AGTGTA----GGATTTGTGGCATTATCTCTC
s caeSp111.Scaffold412    114410 129 +   118955 -------------------------------------------------Ggatac----------------------------------------------------------------tcttttttttactt----------------------------------------------------------------------------------ttgaagaaaaattt---------ggagAC----------------------AGAGGCTTCCA-------------------------------------------ATTGTCTA-----------TCAAAG---AGTAAAAGCTTTATCAAG-----------------------------------AATTCTTCagtaa----------ataaaga-------aaatatatattcaaatgagaa-----------------------------------------------CTCTC
i caeSp111.Scaffold412  C 0 C 0
s caeJap4.Scaffold17495   132639 501 +   161274 TTTAGAATGGTTTTTCTTATGAACTTGTTCAATTTAGTTTATTTATTAGGTATATGTATAAAATCGTATGTATAAAATCTGACCCCGTTCTATTGCCGGCGACTCCAGCCAGCAgtacttttttttcgtggttttttgcTGGGATCATGGACTAACGGGGTCATGAAAGATACTCTGAATGGTATAGTATCCaaccccaacaacagaaatggggattgtgaaaaatattattttataGTTAGGTAATTGTATGGAAATTAACCTCAATATTCTCCCAAATGCACAGTATACTTGGCAACccaagaaagttttttttaatgattttctaGCCAAGTctctttaaat---tttaaaaagtatattaaaaaattacatattaaaccatataaatttct------caaaacttgaaaatctgCTATTCAAAATTGTCTACATTATTGTGTATGCCAAACAAAATAGCTCGTTAACCCGTATTTGAGCGTATTTTACATTTGTAATCACACCTAT-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       199304  37 +   783054 I
e cb4.chrX              21361835  21 - 21540570 I
e caeRem4.Crem_Contig24   708149   0 -  1162296 C

a score=-951.000000
s ce10.chrX               985719  75 + 17718866 TGTGTGTTCCACAATGT------------------ATTTTTT---------GATCT--------------ACATAGTTTTAAAGCTT--TTATTTCAGATATCTTCTTTTTCTTTGAC
s caeJap4.Scaffold17495   133140 113 +   161274 ----TGTTCATTCATGTGAAGCTGGCAGTTGGCTGACTCTTTCTAGCGGCGGATCTTGAACCGGAAGTGGACGTCGATT-AATGCTCGCTTGTTTCACAATTCGATGTTTCTCTCAAC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       199304  37 +   783054 I
e cb4.chrX              21361835  21 - 21540570 I
e caeSp111.Scaffold412    114539   0 +   118955 C
e caeRem4.Crem_Contig24   708149   0 -  1162296 C

a score=-2837.000000
s ce10.chrX               985794 22 + 17718866 ACTCTA--------GAAAT---------------ACAATCA----------CTTC
s caeRem4.Crem_Contig24   708149 41 -  1162296 acacaa--------aaaatcgtaAA------CCTATAATCAGACAGTAAATCGTT
i caeRem4.Crem_Contig24 C 0 I 2
s caeJap4.Scaffold17495   133253 46 +   161274 GCCCAATTTGTGACGAATTCTTTCACTGTTGCCGACAGCCAG---------CTCC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       199304 37 +   783054 I
e cb4.chrX              21361835 21 - 21540570 I
e caeSp111.Scaffold412    114539  0 +   118955 C

a score=312.000000
s ce10.chrX               985816 4 + 17718866 AAAT
s cb4.chrX              21361856 4 - 21540570 aaat
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig24   708192 4 -  1162296 CAAA
i caeRem4.Crem_Contig24 I 2 C 0
s caeJap4.Scaffold17495   133299 4 +   161274 ACAT
i caeJap4.Scaffold17495 C 0 I 34
e caePb3.Scfld02_62       199304 37 +   783054 I
e caeSp111.Scaffold412    114539 0 +   118955 C

a score=187.000000
s ce10.chrX               985820 1 + 17718866 T
s cb4.chrX              21361860 1 - 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   708196 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       199341 1 +   783054 T
i caePb3.Scfld02_62     I 37 C 0
s caeJap4.Scaffold17495   133337 1 +   161274 C
i caeJap4.Scaffold17495 I 34 C 0
e caeSp111.Scaffold412    114539 0 +   118955 C

a score=149980.000000
s ce10.chrX               985821 155 + 17718866 ACCTCTAGCAATCCATCATAATGAGTAGGCTTTGAAAAGTTGCCCTCCTCCTTCGATGTACCCCACGGATTTGCACCACTTCCCCAACTGAGCAAGTTCAGTACAACAATCCCTTCGATGTTTGGCAATTCGATTATACGACCGTCAACCTGAAA
s cb4.chrX              21361861 155 - 21540570 acttCTAGCAGCCCATCATAATGAGTTGGCTTTGAAAAGTTGCCTTCTTCTTTTGATGTTCCCCATGGATTGGCTCCACTTCCCCAACTGAGCAAATTGAGTACTACGATTCCCTCAATATTTGGAAGCTCAATAGTGCGACCGTCCACCTGAAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   708197 153 -  1162296 ACCTCTAGTAGTCCGTCATAATGAGTCGGTTTTGAGAagtttccttcttccttcgaCGTTCCCCACGGGTTGGCTCCACTTCCCCAACTGAGTAAATTCAATACGACTATTCCTTCGATGTTTGGTAATTCTATAGTGCGGCCATCAAcctga--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    114539 155 +   118955 ACCTCTAACAATCCATCATAATGAGTTGGCTTTGAAaagtttccttcttctttcgatgtTCCCCATGGATTTGCCCCACTGCCCCAACTAAGCAAATTGAGTACAACTATCCCTTCGATGTTCGGTAACTCTATGGTGCGACCATCAACCTACAA
i caeSp111.Scaffold412  C 0 I 4
s caePb3.Scfld02_62       199342 155 +   783054 ACCTCCAATAAACCATCATAATGAGTTGGCTTTGAGAAGTTGCCTTCTTCCTTGGAAGTACCCCATGGATTGGCTCCACTTCCCCAACTTAATAAATTCAATACAACTATTCCTTCAATGTTCGGCAACTCAATTGTACGACCATCAACCTGAAA
i caePb3.Scfld02_62     C 0 I 37
s caeJap4.Scaffold17495   133338 155 +   161274 ACCTCGAGTAATCCGTCATAATGGGTTGGTTTTGAGAAAGATCCTTCCTCTTTTGATGTTCCCCACGGATTTGCACCACTCCCCCAACTCAACAAGTTTAAAACAACAATTCCTTCGATATTAGGTAATTCAATTGTACGCCCGTCAACCTTAAG
i caeJap4.Scaffold17495 C 0 C 0

a score=-1604.000000
s ce10.chrX               985976 2 + 17718866 -GT
s cb4.chrX              21362017 2 - 21540570 -TA
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold412    114698 2 +   118955 -TT
i caeSp111.Scaffold412  I 4 C 0
s caeJap4.Scaffold17495   133493 2 +   161274 AT-
i caeJap4.Scaffold17495 C 0 I 35
e caePb3.Scfld02_62       199497 37 +   783054 I
e caeRem4.Crem_Contig24   708350 0 -  1162296 C

a score=-2249.000000
s ce10.chrX               985978 33 + 17718866 TTTATAGTTTTATTTAGGTTTTTTCTGGTAGAT
s cb4.chrX              21362019 25 - 21540570 AGCACAATTACATTTCAA--------GAGAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   708350 22 -  1162296 -----aatcagtttttag------ttgaGAAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    114700 29 +   118955 TGCACAGT----TTTCGACTAAATTCGACAATA
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       199497 37 +   783054 I
e caeJap4.Scaffold17495   133495 35 +   161274 I

a score=205.000000
s ce10.chrX               986011 1 + 17718866 C
s cb4.chrX              21362044 1 - 21540570 C
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24   708372 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 21
s caeSp111.Scaffold412    114729 1 +   118955 T
i caeSp111.Scaffold412  C 0 I 1
s caeJap4.Scaffold17495   133530 1 +   161274 C
i caeJap4.Scaffold17495 I 35 C 0
e caePb3.Scfld02_62       199497 37 +   783054 I

a score=458447.000000
s ce10.chrX               986012 513 + 17718866  
s cb4.chrX              21362053 517 - 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig24   708394 517 -  1162296  
i caeRem4.Crem_Contig24 I 21 C 0
s caeSp111.Scaffold412    114731 512 +   118955  
i caeSp111.Scaffold412  I 1 I 63
s caePb3.Scfld02_62       199534 520 +   783054  
i caePb3.Scfld02_62     I 37 C 0
s caeJap4.Scaffold17495   133531 513 +   161274  
i caeJap4.Scaffold17495 C 0 C 0

a score=374.000000
s ce10.chrX               986525 2 + 17718866 GT
s cb4.chrX              21362570 2 - 21540570 GT
i cb4.chrX              C 0 I 2025
s caeRem4.Crem_Contig24   708911 2 -  1162296 AC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       200054 2 +   783054 AC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   134044 2 +   161274 AT
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412    115243 63 +   118955 I

a score=-1107.000000
s ce10.chrX               986527 1 + 17718866 -T
s caeRem4.Crem_Contig24   708913 1 -  1162296 -T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       200056 1 +   783054 -T
i caePb3.Scfld02_62     C 0 I 84
s caeJap4.Scaffold17495   134046 1 +   161274 G-
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21362572 2025 - 21540570 I
e caeSp111.Scaffold412    115243 63 +   118955 I

a score=350.000000
s ce10.chrX               986528 7 + 17718866 TATAACT
s caeRem4.Crem_Contig24   708914 7 -  1162296 GATTGCT
i caeRem4.Crem_Contig24 C 0 I 87
s caeJap4.Scaffold17495   134047 7 +   161274 AATCATT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       200057 84 +   783054 I
e cb4.chrX              21362572 2025 - 21540570 I
e caeSp111.Scaffold412    115243 63 +   118955 I

a score=91.000000
s ce10.chrX               986535 1 + 17718866 A
s caeJap4.Scaffold17495   134054 1 +   161274 A
i caeJap4.Scaffold17495 C 0 I 43
e caePb3.Scfld02_62       200057 84 +   783054 I
e cb4.chrX              21362572 2025 - 21540570 I
e caeSp111.Scaffold412    115243 63 +   118955 I
e caeRem4.Crem_Contig24   708921 87 -  1162296 I

a score=0.000000
s ce10.chrX               986536 678 + 17718866  
e caePb3.Scfld02_62       200057  84 +   783054 I
e caeJap4.Scaffold17495   134055  43 +   161274 I
e cb4.chrX              21362572 2025 - 21540570 I
e caeSp111.Scaffold412    115243  63 +   118955 I
e caeRem4.Crem_Contig24   708921  87 -  1162296 I

a score=125.000000
s ce10.chrX               987214 18 + 17718866 ACTGAATACCCCCTTTAA
s caeRem4.Crem_Contig24   709008 18 -  1162296 ACTAAATTCATTCACAAC
i caeRem4.Crem_Contig24 I 87 C 0
e caePb3.Scfld02_62       200057 84 +   783054 I
e caeJap4.Scaffold17495   134055 43 +   161274 I
e cb4.chrX              21362572 2025 - 21540570 I
e caeSp111.Scaffold412    115243 63 +   118955 I

a score=-96.000000
s ce10.chrX               987232 1 + 17718866 T
s cb4.chrX              21364597 1 - 21540570 T
i cb4.chrX              I 2025 C 0
s caeRem4.Crem_Contig24   709026 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       200141 1 +   783054 T
i caePb3.Scfld02_62     I 84 C 0
e caeJap4.Scaffold17495   134055 43 +   161274 I
e caeSp111.Scaffold412    115243 63 +   118955 I

a score=314599.000000
s ce10.chrX               987233 321 + 17718866 TACCTGTTTAGCAATATCTAAACATTGCAGTACCCATCCAATTGTTCCATCTCCACCACATGCAAGAATTTTGTATTTTGGAATGTTGCGAAACACGTATAATCCAACCAACGGTCCTCCATTCAACACATCAAAAACTTGAAATGGGTTGAGGAGTTTGCGGAAAGATTGTATTAACTCGGTTCCTTGGCAACCTCCTGACTTTACATTAACTAGCACAAGGAGTGGTTCAACGTCTTTTGGAATCATCTGTGGTTGAACATTTGGCAGACATAAAACTATCAGCTTCTTTTCCTCGTATATTGCAGATTGCAGCTTTTG
s cb4.chrX              21364598 321 - 21540570 TGCCTGTTTAGCAATGTCCAAACATTGCAGGACCCAACCAATAGTTCCATCTCCACCGCACGCGAGAATTTTGTATTTGGGAATGTTGCGGAACACATAAAGTCCAACAAGAGGACCACCATTCAACACATCAAACACTTGGAATGGATTTAACAACTTTCTGAACGATTGGATTAGCTCGGTTCCTTGACAACCTCCGGATTTCACATTGACCAACACCAAGAGTGGTTCGACATCTTTAGGAATCATCTGTGGCTGCACGTTGGGCAAACACAGGACGATCAACTTTTTATCCTCGTAAATAGCCGATTGAAGTTTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   709027 321 -  1162296 TACCTGTTTTGCAATATCTAAGCATTGTAATACCCATCCAATGGTTCCATCACCACCACATGCAAGAATTTTGTATTTCGGAATATTGCGGAACACGTATAACCCTACTAAAGGACCACCATTCAACACATCGAACACTTGGAATGGGTTGAGAAGTTTGCGGAACGATTGTATCAATTCAGTTCCTTGACACCCTCCAGATTTCACATTGACCAGCACCAATAAGGGTTCCACATCTTTCGGAATCATTTGTGGTTGAACATTGGGTAAACATAAAACTATTAATTTCTTGTCCTCGTATATTGCTGattgtagtttttg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    115306 321 +   118955 TACCTGTTTAGCTATATCGAGGCATTGTAATACCCATCCAATAGTTCCATCGCCACCGCAAGCCAGTATTTTGTATTTAGGAATGTTTCGGAACACGTATAAGCCCACTAACGGACCGCCATTCAACACGTCAAACACTTGGAATGGGTTCAGAAGTTTTCGGAACGACTGTATCAATTCAGTTCCTTGGCACCCTCCAGATTTGACATTCACTAGTACCAACAGTGGTTCAACGTCTTTTGGAATCATCTGTGGCTGTACATTTGGTAAACAAAGAactattaattttttctcctcatATATTGCTGAttgcaatttttg
i caeSp111.Scaffold412  I 63 C 0
s caePb3.Scfld02_62       200142 321 +   783054 CACCTGTTTAGCAATATCTAAACATTGCAATACCCATCCAATGGTTCCATCTCCACCACATGCCAATATTTTGTATTTGGGAATATTTCGGAACACGTACAAGCCGACCAATGGGCCACCATTTAACAcatcaaaaacttggaatgGATTAAGCAACTTTCGAAACGATTGTATCAATTCTGTTCCTTGACAACCACCGGATTTGACATTCACAAGTACCAATAGTGGCTCTACATCCTTCGGAATCATTTGCGGTTGAACATTTGGTAAACACAAAACTATCAACTTTTTCTCCTCGTATATTGCtgattgtaatttttg
i caePb3.Scfld02_62     C 0 I 311
s caeJap4.Scaffold17495   134098 321 +   161274 TACCTGTTTCGCAATGTCTAAGCATTGCAATACCCATCCAATAGTGCCATCTCCACCACAAGCCAGAATTTTGTATTTTGGAATGTTGCGAAAAACGTATAACCCCACCAAGGGGCCTCCATTTAGAACATCAAAGACTTGGAACGGATTGAGCAGTTTGCGAAAGGATTGGATAAGTTCGGTTCCCTGGCAACCTCCAGACTTGACGTTTACCAGGACGAGAAGAGGTTCTACGTCTTTGGGAATCATTTGTGGTTGAACATTTGGCAAGCACAAAacaatcaattttttctcttcaTAAATTGCAGATTGTAATTTTTG
i caeJap4.Scaffold17495 I 43 C 0

a score=211062.000000
s ce10.chrX               987554 298 + 17718866 AACAGCTGCTGTGGCGGCCTTGGGTGTGTTGAATGTGATAATCAAACTACCGTATTCAAAGTAGATCGGCCCGATTGCAGTAAATGGTTTTTCTG-GAAACAATTA----------------------------CACATGTCTAATAAATTAAGTTTCCCAGG---------------------------------------------------TATACTCACCTTTAGCACCTAGAAGTTTCAGAAGAATTCGTTCATATTGACGCTGTGCGAGTGACACGGGTAGGTTTCCAACAAAAACCGCATGATCATGAGGGTCCTCTTTTTCTTGGACATAAAACCGAACAACGTGGTAGCGCCGCAGGGAGTCCTAAAAA
s cb4.chrX              21364919 294 - 21540570 AACAGCTGCAGTGGCTGCCTTTGGAGTGTTGAACGTAATAATTAAACTCCCGTATTCGAAATAGATCGGTCCAATCGCGGTGAATGGTTTTTCTGcgaaataaata----------------------------taaattttgtgATATTTCACAATTTGA-------------------------------------------------------CGGTTACCTTTAGCGCCTAATAACTTCAATAAAATTCTTTCATATTGTCGCTGTGCGAGGGAAACCGGTAGGTTTCCAACAAAAACGGCATGATCATGTGGGTCTTCCTTTTCTTGAACGTAGAATCGGACCACATGATAACGACGGAGGGAATCCTAAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   709348 300 -  1162296 aacagCTGCTGTCGCTGCTTTCGGGGTATTGAATGTGATAATAAGACTGCCATACTCAAAATAGATTGGTCCAATTGCAGTAAACGgcttttcta-gaaaaaaaga------------------------ttattacATACTGAAATAATCAAATATCCAGAT-----------------------------------------------------TCTCTACCTTTGGCACCTAGAAGTTTTAGTAAAATTCTTTCATATTGACGTTGGGCAAGAGATACAGGtagatttccaacaaaaaccgCATGATCATGAGGGTCCTCCTTTTCTTGGACATAAAATCGGACAACATGGTACCGCCGCAGAGAATCCTGAAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    115627 293 +   118955 aacagCCGCTGTGGCAGCTTTTGGAGTGTTGAATGTGATGATCAAGCTACCATACTCAAAATATATTGGTCCAATAGCAGTGAACGGTTTTTcta-taattctttt------------------------ttcatgcAATTGATTAGAATGAATGTTTTTT------------------------------------------------------------ACCTTTAGCACCTAATAATTTCAGTAAAATTCTTTCATATTGTCGTTGTGCAAGGGATACAGGTAAGTTTCCAACAAACACAGCGTGATCGTGAGgatcttctttctcttgaaCATAGAACCGCACGACGTGATATCGCCGAAGAGAATCCTGCAAT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       200774 292 +   783054 aaCAGCAGCAGTTGCTGCTTTTGGGGTATTGAAAGTGATGATTAAGCTACCATATTCAAAATAGATAGGACCAATTGCAGTaaatggtttttctg-aaattaacgG------------------------TTT-TGTGATTTGTTACA--GAATGATTTCT----------------------------------------------------------CCACCTTTAGCACCTAATAATTTAAGTAGAATTCTTTCATATTGACGTTGTGCAAGTGATACAGGTAGGTTTCCAACAAAAACGGCATGATCATGTgggtcttctttttcttggacGTAGAATCGAACAACATGATATCTTCTCAGGGAATCCTagaat
i caePb3.Scfld02_62     I 311 C 0
s caeJap4.Scaffold17495   134419 377 +   161274 TACGGCAGCAGTTGCTGCCTTTGGGGTGTTGAAAGTAATTATTAAGCTTCCATATTCGAAATAAATTGGCCCAATTGCAGTGAAtggtttttctg-gaaaatattaATAGAGCTGTTcgttttcagttgttttttttagctaatttaaatggtttttttttatgttagCAACCTAACACACATTGTTTGAATgctacaaaaataaaaataaagttgAACGTGCCTTTGGCTCCTAACAGTTTCAACAAAATTCTTTCATATTGACGTTGAGCTAGTGACACTGGtaaatttccaacaaaaaccGCGTGGTCATGAGGGTCTTCTTTCTCTTGTACATAAAATCGCACAACGTGATATCGACGGAGTGAGTCCTGCAAT
i caeJap4.Scaffold17495 C 0 I 98

a score=-11404.000000
s ce10.chrX               987852 29 + 17718866 T--------AAAGCATTTTATATTAAACTCTCATGGT-
s cb4.chrX              21365213  7 - 21540570 ------------------------------TCATTGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   709648 18 -  1162296 A-------------------AAGCCAACTGTTATAGt-
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold412    115920  1 +   118955 C-------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201066 31 +   783054 ttagaaatgaaa-------aattcgaaaaattctagat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   134796 98 +   161274 I

a score=-12468.000000
s ce10.chrX               987881 102 + 17718866 GTTCAGACTGAATATTAAGCAGGTATAAGGATGGCGAGATATTGATCTAGGCCGTTTAGAGCTTGGTTGTAAAACTATGTGATGTAGAACATTTTCTACGCA
s cb4.chrX              21365220  18 - 21540570 -----------------------------------------------------GTTTA----TGTCTTGCCACAC---------------------------
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold412    115921  30 +   118955 --------------------------------------ATAT-----------ACTTGAAACCGGTTTCTCG----------------GTATTTT-------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201097  69 +   783054 tttcaga--gaaaattagTTA--------------CAGAAAG-----------GTTTGGGATTGCTTTGTCGGATTTTGCAATTATCAGTATTTTt------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   134796  98 +   161274 I
e caeRem4.Crem_Contig24   709666   8 -  1162296 I

a score=789.000000
s ce10.chrX               987983 17 + 17718866 ATTTTGAGCTCAAAGTT
s caeJap4.Scaffold17495   134894 17 +   161274 attttggtttccaaatt
i caeJap4.Scaffold17495 I 98 C 0
e caePb3.Scfld02_62       201166  0 +   783054 C
e cb4.chrX              21365238 10 - 21540570 I
e caeSp111.Scaffold412    115951  0 +   118955 C
e caeRem4.Crem_Contig24   709666  8 -  1162296 I

a score=-18218.000000
s ce10.chrX               988000 83 + 17718866 ACTGTTCAAACCGATTACTTTAACAAAGTAGTTCTTAGTCCTCAGCCGATAAAAAAAATTCAGAGTTAGCTGAAAGGTCTCGT
s caeRem4.Crem_Contig24   709674 10 -  1162296 -----------------------------------------------actgtaggtc--------------------------
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold412    115951 24 +   118955 ----------------------------------------------CAGGAGAAGTTCTCAGAATCTCGC-------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201166 37 +   783054 ---------------------------gtgatt------------ccaaaaaaaatcattcaaaattctccAAGAA-------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   134911 14 +   161274 ----------------------------------------------------attttatttcacgt-----------------
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21365238 10 - 21540570 I

a score=-278.000000
s ce10.chrX               988083 21 + 17718866 TGGAA--ACGAATGTAGTCTACA
s caeJap4.Scaffold17495   134925 23 +   161274 tgaatttacacgtgaaatgaaaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       201203  0 +   783054 C
e cb4.chrX              21365238 10 - 21540570 I
e caeSp111.Scaffold412    115975  0 +   118955 C
e caeRem4.Crem_Contig24   709684  0 -  1162296 C

a score=-29732.000000
s ce10.chrX               988104 106 + 17718866 AATTTGCCTACCATGATACAA-CTACATTGAATTGAAATTTCAATTCGAGATTTTGCAAGTTT----------AAAAGTTTGTTTCTACTGTCAATATAGCAAATTGTCTGCCGTAT
s cb4.chrX              21365248   5 - 21540570 ---------------------------------------------------------AATTT-------------------------------------------------------
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24   709684   2 -  1162296 ------------------------------------------------------------ca-------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       201203  73 +   783054 ------------------------AGATTAGATTGGACTTT---Tcc----ctttccaatttt----------caacatttccatCTTTTGCTGTACTATCAAATTGT-TGTCTC--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   134948  89 +   161274 aatttggaaaccaaaataaaatccacgtagtattgagttcagcggagcgcgtttgaccattttggcgggccgacaatatatatatatat----------------------------
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412    115975   0 +   118955 C

a score=324430.000000
s ce10.chrX               988210 352 + 17718866 ACCTTTCTCAAATTTCGGACCAACTGAAGAACATTCTCTTGTGGATTGCATGTTCTCTCAGCAACTCCTCTATCGAGGGAGACTTCTATGAGATTGTACCGATTCCAACACGAACCATCAAGCCCGAAGTGATACAGAGCATCAGTGACCAAATCCTGCACAACTGTGTCCTTACTGACCGAGATCGCGCAGAACGTGACTGGAACTTTACGCAACCACCCTCCGTACACTTTCACCTCGTCTTTATCCGGATCATCATAATATCTAATAAATATTTGAGCACGTTTTCCCTCAGGACGCTTTACATTGCGCAATGGGACCGGGTCCTCGAGGATTTCCTCCTCAACTGAAA---
s cb4.chrX              21365253 349 - 21540570 AcctttctcaaatttcgaactAATTGAAGAACATTTTCCTGAGGATTGCAGGTTCTCTCAGCTACTCCTCGGTCAAGAGAAACTTCAATGAGGTTGTATCTATTCCAGTATGCCCCATCAAGCCCAAAATGATAAAGGGCTTCGGTAATAAGATCTTGTACAATTGTATCTTTGCTAACTGAGATTCCACAGAATGTCACCGGAACCTTGCGCAACCATCCACCATATACTTTTACTTCATCTTTGTCCGGATCATCGTAATATCTTATAAATATTTGGGCTCGCTTCCCTTCCGGACGCTTCACATTTCTCAAAGGTACTGGGTCCTCGAGTATTTCCTCTTCTACTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   709686 349 -  1162296 acctttctcaaatttctaacCAACTGCAACACGTTTTCTTGTGGGTTACATGTTCTCTCAGCGACCCCTCTGTCTAATGAAACTTCAATAAGATTATATCGGTTCCAAAACGACCCATCAAGTCCAAAATGATAAAGAGCATCTGTCACTAGGTCCTGCACAATCGTGTCTTTTGTGACATTGATCGCACAAAATGTGACCGGAACTTTCCGCAACCATCCACCGTACACTTTGACCTCATCCTTGTCCGGATCATCATAATATCTGATGAATATTTGAGCACGCTTCCCTTCAGGACGTTTCACATTTCTCAAAGGTACTGGATCTTCGAGTATTTCTTCCTCTACTG------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    115975 349 +   118955 ACCTTTCTCAGATTTCGAACTAATTGTAATACATTTTCTTGCGGGTTGCATGTTCTCTCTGCTACTCCTCTATCCAACGAAACTTCAATCAAATTGTATCGGTTCCAACAAGAACCATCCAAGCCAAAGTGATAGAGAGCCTCGGTGACCATATCTTGAACCACAGTGTCTTTGCTGACAGAAATTGCACAAAATGTTACTGGCACTTTTCGCAACCATCCACCATAGACCTTCACCTCATCTTTATCTGGGTCGTCATAATATCTGATAAAAATTTGTGCACGTTTTCCTTCCGGACGCTTCACATTTCTAAGAGGTACTGGATCCTCAAGTAgttcttcttcaactg------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201276 349 +   783054 ACCTTCCTCAAGTTTCTAACTAACTGCAAAACATTCTCTTGTGGATTACATGTTCTCTCAGCAACTCCTCTATCTAATGAAACTTCGATAAGATTATATCTATTCCACAGTGCGCCATCAAGTCCGAAATGATAAAGAGCATCAGTGACCAAATCTTGAACAATGGTGTCTTTGCTCACAGAAATTGCACAAAACGTCACTGGCACTTTGCGTAACCATCCGCCATACACTTTTACTTCATCTTTGTCTGGATCATCATAATATCTGATGAATATTTGAGCACGCTTTCCTTCTGGTCGCTTTACGTTTCTGAGGGGCACAGGGTCCTCGAgtatttcttcttcaactg------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   135037 352 +   161274 acctTTCTTAAATTTCTAACTAATTGTAAAACATTTTCTTGCGGATTACACGTTCTTTCGGCAACTCCACGATCTAATGACACTTCAATCAAATTGTATCTATTCCAACAGGAACCATCGAGGCCAAAGTGATGAAGAGCATCAGTTACCAGATCTTGCACAATGGTGTCTTTGCTCACCGAAATTGCGCAAAATGTCACTGGAACTTTACGCAACCATCCCCCGTAGACTTTGACTTCGTCCTTGTCGGGATCATCGTAGTATCTTATAAAAATTTGAGCACGTTTCCCTTCAGGTCTTTTCACATTTCTCAAAGGAACAGGGTCTTCCAGTATCTCTTCCTCTActt---aaa
i caeJap4.Scaffold17495 C 0 I 34

a score=1514.000000
s ce10.chrX               988562 35 + 17718866 TGAATTGAATTCGAATAAATTATTCGTA-CGCGG------------------------TC
s cb4.chrX              21365602 42 - 21540570 -----------CAAATGAATCATTCTCGTTGCAGTGACTCT--CTTGTTTCTT-----CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710035 43 -  1162296 -----------CAAATGAATTATTCGTA-TGCGGTCACTCTCCCTTCCTTTTT-----CT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116324 47 +   118955 ------------aaatgaataatttgtG-CGCGGTCAgactcacttttctttttctattt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201625 47 +   783054 ------------aaatgaataatttgtg-CCTGAGCTCACACTCCTCTTTTCTCAGTCCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   135389 34 +   161274 I

a score=125130.000000
s ce10.chrX               988597 154 + 17718866 AGGCTTACCCTCGCCGACCACTTGAGTAATATAATATCTTTCGGGTGTATCGTTGATGTGAAACCGGCGGAGAGCAGCGTCGCGGACTTGTTGCACCGACACGTGTTTGGCAACTACGATATTGCGCGAAATCTAG---------------AAATGGGGGAAACGTTGT
s cb4.chrX              21365644 138 - 21540570 AATCTTACCCTCGCCAACCACTTGTGTAATATAATATCTTTCTGGGGTGTCGTTGATGTGGAACCGCCGTAGAGCAGCATCGCGAACTTGTTGCACGGATACATGCTTAGCCACAACGATATTGCGCGAAATCTGA-------------------------------AC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710078 147 -  1162296 AATCTTACCCTCGCCAACCACTTGAGTAATATAATATCTTTCTGGAGTGTCGTTGATGTGGAACCGGCGGAGGGCAGCGTCGCGAACTTGTTGCACCGATACATGTTTTGCGACGACAATATTGCGCGAAATCTGA--------------GAGAAGT--------TGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116371 146 +   118955 aatcTCACCCTCGCCAACCACTTGAGTAATATAATATCTATCCGGGGTGTCATTGATGTGGAATCGACGAAGTGCAGCGTCGCGAACTTGTTGCACCGACACGTGTTTGGGCACTTGAATATTACgagatatctga---------------aaatgc--------ttGT
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       201672 164 +   783054 AATTTTACCCTCTCCGACCACTTGAGTAATATAATATCTTTCCGGAGTGTCGTTGATGTGGAATCGGCGAAGAGCAGCGTCTCGAACTTGTTGCACTGACACGTGTTTGGCGACGATAATGTTACGagaaatctgaatattttacTAAAGGAAATGCCA-----TTTCT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   135423 147 +   161274 AATCAAACCTTCTCCAACTACTTGAGTAATGTAGTATCTTTCAGGTGTGTCGTTGATGTGAAATCGACGTAGAGCGGCATCACGCACTTGTTGAACAGATACATGTTTTGCAACTATGATGTTTCgagaaatctga---------------aaaaat-------gttgt
i caeJap4.Scaffold17495 I 34 I 256

a score=-17193.000000
s ce10.chrX               988751 42 + 17718866 TGGAAA----------------TTGGGAACAGG------ATGTTTTGTTTTTTTTTTAAT---------------TGTG----------------------
s cb4.chrX              21365782 45 - 21540570 TTCACG----------------GCGTGACAAGG---CAGATAAGAACGAATATT---------------------Tgttgtttaa----------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   710225 82 -  1162296 TTGATG----------------AAGTGGAGACG---TTGAACGagtcgaattttttcagacaactcaaattttgatgttttttatAAACAGTGTCAGTGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116517 40 +   118955 TCAATG----------------TCTTGAGCAGA------GTAGGG--Gacttgtttcaat---------------tttt----------------------
i caeSp111.Scaffold412  C 0 I 58
s caePb3.Scfld02_62       201836 64 +   783054 TCAACGTATAATTATAGTTAGCTCTTGCTCAGAAGCTATGTAAAACCAAATTCTTTCAAC---------------TGTC----------------------
i caePb3.Scfld02_62     C 0 I 12
e caeJap4.Scaffold17495   135570 256 +   161274 I

a score=-1958.000000
s ce10.chrX               988793 22 + 17718866 -------GTCAGTGCAAGAAACAATTTGG-------
s caeRem4.Crem_Contig24   710307 22 -  1162296 -------GCATTCTCATATTGGAATTTGG-------
i caeRem4.Crem_Contig24 C 0 I 58
s caePb3.Scfld02_62       201912 36 +   783054 ACCAcatgagttttcgaaaagaaaaatcggagaTGC
i caePb3.Scfld02_62     I 12 C 0
e caeJap4.Scaffold17495   135570 256 +   161274 I
e cb4.chrX              21365827  1 - 21540570 I
e caeSp111.Scaffold412    116557 58 +   118955 I

a score=403.000000
s ce10.chrX               988815 14 + 17718866 TCAGTGCAAGAAAC
s caePb3.Scfld02_62       201948 14 +   783054 CCTGGATAAGGAAC
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17495   135570 256 +   161274 I
e cb4.chrX              21365827  1 - 21540570 I
e caeSp111.Scaffold412    116557 58 +   118955 I
e caeRem4.Crem_Contig24   710329 58 -  1162296 I

a score=-15345.000000
s ce10.chrX               988829 44 + 17718866 AATTTGGTCAGTGCAAGA----------AACATTTTGGTCAGTGC-------AAGAAACAA-------------------
s cb4.chrX              21365828 34 - 21540570 ----------------------------aatatttt-----ccat-------gaacaagaaa----aaatcacCAAAT--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   710387 40 -  1162296 ----------------------------AACTGTTT-----TTGT-------ACACTGAAAATGGCAGGTCTCAAAATTG
i caeRem4.Crem_Contig24 I 58 C 0
s caeSp111.Scaffold412    116615 36 +   118955 -----AGTTAGTCCGTTAGG--------ACTATCTA-----ATgt-------aggaaaaaa-------------------
i caeSp111.Scaffold412  I 58 I 15
s caePb3.Scfld02_62       201973 50 +   783054 -----AGTTA-TACGgtaggaaacaaaaattgtctt-----gtttttttttcaaaaaaaaa-------------------
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17495   135570 256 +   161274 I

a score=310.000000
s ce10.chrX               988873 5 + 17718866 TTTGG
s caeRem4.Crem_Contig24   710427 5 -  1162296 TATAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       202023 5 +   783054 ttgag
i caePb3.Scfld02_62     C 0 I 75
e caeJap4.Scaffold17495   135570 256 +   161274 I
e cb4.chrX              21365862 0 - 21540570 C
e caeSp111.Scaffold412    116651 15 +   118955 I

a score=-1641.000000
s ce10.chrX               988878 24 + 17718866 TCAGTGCATTCATTAGT---------------------GAACACA
s cb4.chrX              21365862  7 - 21540570 --------------------------------------GAACAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710432 45 -  1162296 TCAGTTATTTTGtctttcagaattctctcTCTTCAACAAAACAAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       202028 75 +   783054 I
e caeJap4.Scaffold17495   135570 256 +   161274 I
e caeSp111.Scaffold412    116651 15 +   118955 I

a score=-7000.000000
s ce10.chrX               988902  4 + 17718866 --TAT------------------------------------------------A
s cb4.chrX              21365869  6 - 21540570 --TAT----------------------------------------------CCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710477 52 -  1162296 --TATATCCTTTCTCATAACTTGAATTAAGAAAACTCCCACACACGCATTGCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495   135826  4 +   161274 TACa--------------------------------------------------
i caeJap4.Scaffold17495 I 256 C 0
e caePb3.Scfld02_62       202028 75 +   783054 I
e caeSp111.Scaffold412    116651 15 +   118955 I

a score=-5638.000000
s ce10.chrX               988906 17 + 17718866 --ACTT------TTTCTTATTGTAC----------------
s cb4.chrX              21365875 15 - 21540570 --GGTT------TTGCTCAAGAG------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710529 21 -  1162296 --GCTTCTCTCGTTTCCCACGAT------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116666 15 +   118955 --gttt------tttcttaattt------------------
i caeSp111.Scaffold412  I 15 C 0
s caeJap4.Scaffold17495   135830 33 +   161274 atattt------tattcaaataA--GTTGAATCAACTGTGT
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       202028 75 +   783054 I

a score=131297.000000
s ce10.chrX               988923 135 + 17718866 GCTTACCTGCGATCGATATGAGTTGTTCCCGTCAAAAACTCGAATAATCTCAAAATCTTCCCGTTCTTTGACGTCTTCTCCAGAAGTCGAGACGTCATCCGCTTGAATTTTTGATGGCGATGATACTGAATAAAA
s cb4.chrX              21365890 132 - 21540570 TCTTACCTGCAGTCGATATGAGTTGTTCCCGTCAAAAACTCTAATTATCTCAAAATCGTCCCGTTCTTTGACGTCCTCACCAGAAGTCGAGACGTCATCCACTTGAATTTTGGATGGCGACGATACTGAATA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710550 135 -  1162296 TCTTACCTGCAGTCGATATGAGTTGTTCCCGTCGAAAACTCGAATAACTTCAAAATCATCCCGTTCTTTGACGTCCTCTCCAGAAGTTGAGACGTCATCcgcttgaatttttgatggcGATGATACTGAAAAGAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116681 134 +   118955 -cttGCCTGCAGTCGATATGAGTTGTTCCCGTCAAAAACTCGAATAACTTCCGAATCATCCCGTTCTTTGACGTCTTCTCCAGAAGTCGAAACTTCATCcgcttgaatttttgatggtGATGATACTGAATACAC
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202103 134 +   783054 ACTCACTTGCAATCGATATGAATTGTTCCCGTCGAAAACTCGAATAACTTCAAAATCGTCCCTTTCTTTGATTTCCTCCGCAGTGGTGGAGACGTCATCGGCTTGGATTTTTGAGGGAGACGACACTGAAgac-c
i caePb3.Scfld02_62     I 75 C 0
s caeJap4.Scaffold17495   135863 135 +   161274 GTTTACCTGTGAGCGATATGAGTTGTTACCATCAAAAACTCGGATGACTTCAAAATCGTCTCTTTCTTTCACGTCTTCACCGTAAGTTGAAATTTCATCAGCTTGAACTTTAGATGGAGATGACACTGAACAAAA
i caeJap4.Scaffold17495 C 0 I 819

a score=-32577.000000
s ce10.chrX               989058 180 + 17718866 AAGAAA-ATGAGTCAGAATGGGATAAGACGCGGGAAAGTTTGAATAAGAAAACAAAGACAGATCAGAAGATAGCATCTAAAGATCCGGAGTTTAGTTGAAAACTTGGGATAGTCAAAGCAATTCTGATAAAAAAACAGAATTAAATCGTTTTTATCTGCTGAATAATGTTTTGACGAAAAT
s cb4.chrX              21366022  68 - 21540570 -------CATTCATATA----GATATTATATGAG-GAACTGAAAGAGTA--------------------------------------------------------GGGATGGGATAGTGGAT--TGATGGGAAAGTaa-------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710685  89 -  1162296 GAAACATAATTCACAT-----GACACTACA-----GAGTTCAAACAAAA-------------------------------------------------------TGGGATAGTTTAGAGAGA--CAGTCAGAAGGTAA----------------------GCATAAAGTACTAATGGA---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116815  52 +   118955 AAAGTA-ATATGGTATA----AGTATTC-----------TAGGGGAGAAGA-----------------------------------------------------TGGGACAGTTCAGAGAT------------------------------------------------------------
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202237  74 +   783054 aaatga-ttttttcgta----ttttttccgTTG--CAATTGGGATAGGAAg-----------------------------------------------------cggaaaaatagaaacaca--ccatatgaaaat---------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   135998 819 +   161274 I

a score=-10094.000000
s ce10.chrX               989238 121 + 17718866 TAAAACTCGCAATGGTA-AAGTTTTTGTTTTTTTTCTTTTTAGAATTTTTACAGTGTCATGTTTTGTTTTAAAACAAAACAAGGACAGGGTGAAGTCACAATAACAAAGGCTTTTTGGAGAA--
s cb4.chrX              21366090  54 - 21540570 -aaaa---aca-------gagatatg---------------------------------------------------aaaaaggacaggagga------aaaacaaaatactCTTTTAAGAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   710774  57 -  1162296 TAGAA---ACATTCGTATAAGAtgtggatt---------------------------------------------aaaaaaaagaagagaggt------aACAGAAAAGAC-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    116867  52 +   118955 ------------------TAAAGTTGGCT------------------------------------------------gaagatgagaagagga------aaaacatcatttgctttcgaaagaa
i caeSp111.Scaffold412  C 0 C 0
e caePb3.Scfld02_62       202311   0 +   783054 C
e caeJap4.Scaffold17495   135998 819 +   161274 I

a score=-3239.000000
s ce10.chrX               989359 34 + 17718866 AGTGTGGAAAAAGTGTGAGAAAT--AAAACACAAAA
s cb4.chrX              21366144  4 - 21540570 --------------------------------GAGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    116919 24 +   118955 ----------aaacaagagaaag--aaagaaagttt
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202311 36 +   783054 agtgggagagaagtgggaaaaaactaaaagaggaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   135998 819 +   161274 I
e caeRem4.Crem_Contig24   710831  0 -  1162296 C

a score=187781.000000
s ce10.chrX               989393 253 + 17718866 ACAGCTACACTATCCA-ATTCCGGTCGGCC---TAATA--AATACGTGGCG----------------------------AATT---AT--TTTACCGACAGACAGGATAGTGAAAAATCTGACCCTTACGAGACTGTGGCTGATCATGAGAGGAGATATTCAGAAGTTGCTCCATCGGCAGCTCGGTTCGAGGTATTGTAAGGCACATTGGTGGTAGCATGATTTTCCGTAAAACTCCAAAGTCACATTCCTTGTCCATTTGTCGATAGCAAACCGCGTGAGCCTT-------------------------------------------------------------------------------TAAATT
s cb4.chrX              21366148 259 - 21540570 GAAACTAAACTATCCC-ACTCCAGTCGGCTGTGgaagt--taaattttttt----------------------------ttttttaag--agAACCGACAGACAGGATAGTAAAAAATCTGACCCTTACGAGACTGGGGCTGATCATGCGATGAAATGTTCAATAGTTGCTCCATTGGTAGCTCCGTTCGAGGAATTGTCAAACACATGGGCGGAAGcataatttttcgaagtaCTCCAAAATCACATTCTTTGTCCATTTGTCGATAGCAAACCGCATGAGCCTG-------------------------------------------------------------------------------GAATCT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   710831 253 -  1162296 --AACTACACTATCCAGAATTCAGTCGGCC---TAAAT--GAGACGTTCAG----------------------------TTTTC--AA--TGTACCGACAGACAGGATAGTGAAAAATCTGACCCTTACGAGACTGTGGCTGATCATGTGATGAGATGTTCAACAGCTGTTCCATTGGAAGCTCCGTTCGTGGGATAGTCAGGCACATCGGTGGTAGCATAATTTTTCGTAACACTCCAAAATCACACTCCTTATCCATTTGCCGGTAACAAACCGCATGAGCCTA-------------------------------------------------------------------------------AAAGTT
i caeRem4.Crem_Contig24 C 0 I 26
s caeSp111.Scaffold412    116943 251 +   118955 ACATACACACTATCCA-A-----GTCGGCC---Taaatgaagaatatgaaa----------------------------tattc--aa--agtACCGACAGACAGGATAGTGAAAAATCTGACCCTTACGAGACTGTGGCTGATCATGTGATGAGATATTAAGCAGTTGCTCCATGGGTAGTTCCGTTCGGGGAATCGTCAGGCACATTGGCGGTAGCATAATTTTCCTTAGCACTCCAAAGTCACACTCTTTGTCCATTTGTCGATAACACAATGCATGAGCCTG-------------------------------------------------------------------------------CAAACG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202347 331 +   783054 aCAACTACACTATCCA-ATTCCGGTCGGCC---T------AGAAAATGCTA----------------------------TTCTC--AATTTGAACCGACAGACAGGATAGTGAAAAATCTGACCCTTACGAGACTGTGGCTGATCATGTGAAGAGATGTTTAGCAGCTGTTCCATGGGCAATTCGGTTCGTGGAATTGTGAGACACATAGGTGGAAGAACGATTTTCCGTAGTACTCCAAAGTCGCACTCCTTGTCCATTTGTCGATAACAAACTGCGTGAGCCTGATGAATCACGAAGATGATTATCAATGTttgcttctattttttgacgaaccaaattcatttgttttctttcaatttagcacaaact
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   136817 281 +   161274 ACAGTCTCACTATCCG-GTTTCAGTCGGCC---ATTTG--AAGATCTTCAACTGGCTGTATATTTGACAGCGTTATCGCTATTC--AA-CTTTACCGACCGACAGGATAGTG-AAAATCTGACCCTTACGAGACTGAGGCTGTTCATGAGAAGAAATGTTCAAAAGTTGCTCCATTGGCAGTTCGGTCCGTGGAATAGTCAAGCACATGGGAGGTAACATTATTTTCCTTAAAACTCCAAAATCACATTCTTTCTCCATTTGCCGATAACATAATGCATGAGCCTA-------------------------------------------------------------------------------GAATT-
i caeJap4.Scaffold17495 I 819 C 0

a score=119.000000
s ce10.chrX               989646 9 + 17718866 TCTGATGTC
s cb4.chrX              21366416 4 - 21540570 -----tttc
i cb4.chrX              I 9 I 12
s caeSp111.Scaffold412    117194 4 +   118955 -----TCTC
i caeSp111.Scaffold412  C 0 I 5
s caePb3.Scfld02_62       202678 4 +   783054 -----tttt
i caePb3.Scfld02_62     C 0 I 24
s caeJap4.Scaffold17495   137098 9 +   161274 TATGGTTAT
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   711084 26 -  1162296 I

a score=-2356.000000
s ce10.chrX               989655 11 + 17718866 ---AGCA-ATAGAAG
s caeSp111.Scaffold412    117203 12 +   118955 ---AATGTGTACAAG
i caeSp111.Scaffold412  I 5 C 0
s caePb3.Scfld02_62       202706 12 +   783054 ---ATCATGAAAAGG
i caePb3.Scfld02_62     I 24 C 0
s caeJap4.Scaffold17495   137107 11 +   161274 ACTTTCATACA----
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21366420 12 - 21540570 I
e caeRem4.Crem_Contig24   711084 26 -  1162296 I

a score=-3875.000000
s ce10.chrX               989666 5 + 17718866 ----TAA--GA
s caeRem4.Crem_Contig24   711110 5 -  1162296 ----tcaga--
i caeRem4.Crem_Contig24 I 26 I 8
s caeSp111.Scaffold412    117215 3 +   118955 ----TAA----
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202718 3 +   783054 ----GTA----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   137118 7 +   161274 CAATTGA----
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21366420 12 - 21540570 I

a score=126205.000000
s ce10.chrX               989671 142 + 17718866 CTGAA--ACTAACCGTCTGACCACACCATTCACATCGCATTCCGGCAAGGCATTCCGTTGAGAAGCACGTTTTTCGGCAAACAATGCACTTGGATTCTTTTGGAAGATTTCCTTCGCGCATGTGGTGGTACTGGACAGTGTTTG
s cb4.chrX              21366432 142 - 21540570 tttgc--gCTTACGGTCTGACCGCACCATTCGCATCTCATTCCAGCAAGGCACTCGGtcgaaaaacacgtttttcgGCAAACCACACATTTTGACTCTTTCGGCAAGTTACCTTCTCTCATATGATGATATTGTACTGTGTTCG
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24   711123 142 -  1162296 tttca--atttaccGTTTGACCACACCATTCACACCGCATTCCAGCAAGGCACTCTGTTGAGAAACACGTTTTCCGGCATACGACACATTTCGATTCCTTCGGCAAGTTTCCTTCTCTCATATGATGGTACTGTACTGCGTTGG
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold412    117218 141 +   118955 -TAAA--ACTAACCGTTTGTCCACACCATTCACATCTCATCCCAGCTAAACACTCCGTCGAAAAACACGTCTTCCGGCAAACCACGCACTTTGACTCCTTCGGCAAATTTCCTTCCCTCATATGGTGATACTGTACTGCATTGG
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       202721 143 +   783054 -TCAGTTACGTACCGTTTGTCCACACCATTCACATCGCATTCCAGCCAAGCACTCCGTCGAGAAGCATGTTTTCCGGCAAACTACACATTTTGATTCTTTCGGCAAGTTTCCTTCTCTCATATGATGGTATTGAACTGCATTCg
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   137125 142 +   161274 TTGTT--TTTTACAGTTTGTCCACACCACTCGCAACGCATTCCCGCTAGGCATTCGGtggaaaaacaggtttttcgGCAAACAGTGCATTTCGATTCTTTTGGAAGATTCCCTTCACGCATATGATGATATTGAACAGCGTTTG
i caeJap4.Scaffold17495 C 0 C 0

a score=3910.000000
s ce10.chrX               989813 4 + 17718866 CCTG
s cb4.chrX              21366574 4 - 21540570 CCTG
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig24   711265 4 -  1162296 CCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       202864 4 +   783054 cctg
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   137267 4 +   161274 CCTG
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold412    117359 0 +   118955 C

a score=726.000000
s ce10.chrX               989817 2 + 17718866 GA
s caeRem4.Crem_Contig24   711269 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 34
s caePb3.Scfld02_62       202868 2 +   783054 aa
i caePb3.Scfld02_62     C 0 I 11
s caeJap4.Scaffold17495   137271 2 +   161274 AA
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21366578 34 - 21540570 I
e caeSp111.Scaffold412    117359 0 +   118955 C

a score=29.000000
s ce10.chrX               989819 1 + 17718866 T
s caePb3.Scfld02_62       202881 1 +   783054 c
i caePb3.Scfld02_62     I 11 C 0
s caeJap4.Scaffold17495   137273 1 +   161274 T
i caeJap4.Scaffold17495 C 0 I 34
e cb4.chrX              21366578 34 - 21540570 I
e caeSp111.Scaffold412    117359 0 +   118955 C
e caeRem4.Crem_Contig24   711271 34 -  1162296 I

a score=-6163.000000
s ce10.chrX               989820 431 + 17718866 TTGATATTGTTAAAGATCTGGCCTATTTTGTGATTACTTTTCAGTGTTTCCTTAAGTATTGTTAAAACAATTATTTAAGTTTGAAAATCTGCTAGCAGTTCATATGGAAATCGAGTAAGTTGTTTTAAGAACTTGTTCTATTAATTTTTTTGGGAAGAAAACCGAATTTTTTTTGCATTGTGGGTACTATTTTGGCTTTCATCAAATTAAAAGTAATAGCTGATTTCAAAAGTACCTCACTCAATGTCAAATAACATAGTTTTCGTGAAAAATGTGTCAAGTAAACTATTATACCATAACGTTATGTGCCTTTTAGAAAATAATCTTAATAATTTCCTAGGTACCTAATTTTAATGACTTTATAAACAAAACAAAAAGGTTTCATTCCGGCAGGCAGCCATTTTGAAAAGAGGTTAAAAAACTACATTGTC
s caePb3.Scfld02_62       202882 161 +   783054 ttgataCT-----CAATTTGTCTCATCGTGGGTTTAATTGTCCAT---------AGATTTgccaaa--aattattggaatt-------------------------------------gtcgctacaa--------------aattttt-------------catatttttttgg---------------tttgttttttttcaa------------------------------------------------------------------------------------------------ttagggGCACCTCTAAAAaccatttgaatttttccc---------------------------------------------cGTTCC----AGTAACCGT------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   137274  34 +   161274 I
e cb4.chrX              21366578  34 - 21540570 I
e caeSp111.Scaffold412    117359   0 +   118955 C
e caeRem4.Crem_Contig24   711271  34 -  1162296 I

a score=-3269.000000
s ce10.chrX               990251 51 + 17718866 TTTTTTCTTAATCaaatataaaataataattaattttttttaaCTCCCAGC---------
s caeRem4.Crem_Contig24   711305 48 -  1162296 tttttttatgtccaaacaaaaaa------------ttttccaggtataacctttttcttc
i caeRem4.Crem_Contig24 I 34 C 0
s caePb3.Scfld02_62       203043  7 +   783054 -----------TCAAATG------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   137274 34 +   161274 I
e cb4.chrX              21366578 34 - 21540570 I
e caeSp111.Scaffold412    117359  0 +   118955 C

a score=968.000000
s ce10.chrX               990302 4 + 17718866 TGAC
s cb4.chrX              21366612 4 - 21540570 TGAC
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig24   711353 4 -  1162296 aaac
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       203050 3 +   783054 -AAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   137274 34 +   161274 I
e caeSp111.Scaffold412    117359 0 +   118955 C

a score=1874.000000
s ce10.chrX               990306 3 + 17718866 TTA
s cb4.chrX              21366616 3 - 21540570 ATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   711357 3 -  1162296 tta
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       203053 3 +   783054 TTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   137308 3 +   161274 TTA
i caeJap4.Scaffold17495 I 34 C 0
e caeSp111.Scaffold412    117359 0 +   118955 C

a score=268195.000000
s ce10.chrX               990309 334 + 17718866 CACTCTCCATATTCGCAACATATGTCGCCGCTTCCTTGCAATCCGACACAGCAAGATCCGAGCAGTCAACATGAACGTAGTACTCGCAAACTGAAA---ATAA-TTCCCC---CACTATTACCATTT----CCT--TATATTCTTCCAAAAAATACCTTCACACTCGACGGACAACGCATCATCGGTTCGTTTTCGGCAAACGCAGCAGTACTTCCTTTTAATCAAACAGGGAGCCGACCACGTATGTGCCACCGGGTTTTTGATCAGTTGCAACGCTACACTGCTGCAGTAGGAAACAACGGTTCGCAGGCACTTTTCGTGACAAACGAAGTTGCACACTGGAAAA-
s cb4.chrX              21366619 329 - 21540570 CACTTTCCATATTTGCTACATATGTGGCTGCTTCTTTACAATCAGATACCGCAAGATCCGAGCAATCGACATGAACATAATACTCGCACACTTAAA---GTAATGTgttcttttactttttttaata----aat---acatttt-------catACCTTCACACTCCACTGACATCGCCTCGTCGGTTCGTTTCCGACATACACAGCAATACCTTCTCTTAATCAAACATGGTGCGGACCATGTATGTGCTACTGGATTCTTGATTAGTTGCAACGCAACACTGCTACAGTAGGACACCACCGTTCGAAGACATTTTTCATGACATATGAAGTTGCACACTAAAAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   711360 327 -  1162296 cACTTTCCATGTTTGCTACATAAGTCGCGGCCTCCTTACAATCCGATACAGCAAGATCTGAGCAGTCGACATGAACATAGTACTCACAGACTGAAACATTTATTGTGCTC---TACTTTTGTCAAAC----GAT------TCGC-------AATACCTTCACACTCAACTGACATCGCCTCGTCGGTTCGTTTCCGACAAACGCAGCAGTATCTTCTTTTAATCAAACAGGGAGCGGACCACGTGTGGGCAACTGGGTTTTTGATTAGTTGCAACGCCACACTGCTACAGTAGGAAACCACTGTTCGGAGGCATTTTTCGTGACAAATGAAGTTGCACACtggaaga-
i caeRem4.Crem_Contig24 C 0 I 2139
s caeSp111.Scaffold412    117359 325 +   118955 CACTTTCCATGTTTGCTACATATGTTGCTGCCTCCTTACAGTCTGACACAGCAAGATCCGAGCAATCAACATGGACATAATATTCACaaacttgaa--------ttttcc---atattttattgatg----aaa---acatttt---ataaACTACCTTCACATTCTACTGACATAGCCTCGTCAGTTCGTTTCCGACAAACGCagcaatattttcttttgatcaaGCATGGTGCTGACCACGTATGTGCCACAGGATTTTTAATCAGCTGTAGTGCCACACTACTGCAGTAGGATACAACAGTCCGTAAGCACTTTTCGTGACAAATAAAGTTGcacactgaaaa--
i caeSp111.Scaffold412  C 0 I 72
s caePb3.Scfld02_62       203056 325 +   783054 CACTTTCCATATTTGCAACATACGTTGCTGCTTCCTTACAGTCCGACACAGCCAAGTCTGAGCAATCCACATGAACGTAGTACTCGCAAACTGGAA--------TTATCC-----TTTGTTTTGCTT----AAATTTGCATTTC----CAAATTACCTTCGCACTCCACGGACATCGCTTCGTCGGTTCTTTTTCGACAAACGCAGCAGTACTTTCTTTTGATGAGACATGGAGCTGACCAAGTGTGTGCAACTGGGTTCTTAATCAGTTGCAGTGCCACACTACTGCAGTAGGAAACAACTGTTCGGAGGCATTTCTCGTGACAAATGAAATTGCACACTGGAAA--
i caePb3.Scfld02_62     C 0 I 7
s caeJap4.Scaffold17495   137311 321 +   161274 CAGTTTCCATATTTGCCACATATGTTGCGGCTTCCTTGCAGTCAGATACTGCGAGATCTGAGCAATCAACATGGACATAATATTCACACACTGTAA--------TTTACG-----TTTTTACCAGTTCTAAAAT---TCATTTT----------ACCTTCACATTCTACCGACATTGCTTCATCGGTTCTTTTTCTACATACACAACAATACTTTCTTTTAATCAAACATGGTGCCGACCAAGTGTGAGCTACCGGGTTTTTGATTAACTGTAGAGCCACGCTGCTACAATACGATACAACCGTTCGAAGACATTTTTCGTGACAAACAAAGTTGCACACTGGAAA-C
i caeJap4.Scaffold17495 C 0 C 0

a score=1295.000000
s ce10.chrX               990643 21 + 17718866 CGAATTAAGTGCAAAATAACT
s caeSp111.Scaffold412    117756 21 +   118955 CCAATTAATTATAACATTTTG
i caeSp111.Scaffold412  I 72 C 0
s caeJap4.Scaffold17495   137632 19 +   161274 --AATTAAGAATAAGGTTATC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       203381  7 +   783054 I
e cb4.chrX              21366948  0 - 21540570 C
e caeRem4.Crem_Contig24   711687 2139 -  1162296 I

a score=-35171.000000
s ce10.chrX               990664 268 + 17718866 TTCTGGTCAATTTTCCGAATATTTGTT----------------ACATATGTTTTTGTCCCAACCGATTCCCATATACCAGGCTTAAATTAGACTGCATTATTTC-------------------------------------CTGTTACTCTCCCTCATCCCATC---CTG------TTTACAAATTGTAGGGTAGATGTCAGAGAGCCGCGTAGAAAATGTGTGTGTGTGTGCTCTTTAATTAGACTGGTACTGAATAATCTGCCTTACTCTACACCCCCAGCTTCATTATGCTAATCAAACTGTACCACCACCACGCTA------ATCCATTTGC
s cb4.chrX              21366948  87 - 21540570 --------------------------------------------------------------------------------------------CGCAAATGTATT-------------------------------------CCGGCTACACAACCAacactaat---ttt-----------------------------------------taaaaat-------------------------aatattgaTTGAGTAGA----------------------------AGTGC----TGA-------------CGAGTTC------AAACACTTAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    117777 271 +   118955 TTGAAAGCATTTataagaaattttgatgaacGTAAGGTGCtgaccaatttttttcatttcaacttttgCA-----GTCAGGTTTCTA-TGTTCATCAAACttttaaataattgaaaattgacaaTATTTTGTGAGGAAATAATGGT--CACAACTAATATCATTCTCTTGGGTCTGTTTACAAATTATAGAGT---------------GTCTCCAAAT--------CGCGTGCTCTATAATTAACTGTGTCCTGTATAAATTGC---------------------CAGTATGCTAATCGA-------------CACGTACAGATGTACCCCCGTAT
i caeSp111.Scaffold412  C 0 I 10
s caePb3.Scfld02_62       203388  97 +   783054 ----------------------TTGGT-----------------------------TTACAACTTATGC---------------------TTCTTCAGAGTTTT---------------------------------------------------------------TTG-----------------------------------------TCTAAAT--------------CCTTGTATTTAACtttttaatgaata------------------------------ttttccaattga-------------tACGTTC------ACCCACTTAC
i caePb3.Scfld02_62     I 7 C 0
e caeJap4.Scaffold17495   137651   0 +   161274 C
e caeRem4.Crem_Contig24   711687 2139 -  1162296 I

a score=-6125.000000
s ce10.chrX               990932 123 + 17718866 AAAAAGGGCAAATAGCAATTGAGAAGAGTGTTTTTGTGCTCTTTTTTTGAGGCTTTTTGGTTTGGGTTCTTGGGTGTACTGCTTGGACAAAAAATGGAAAAAATAAAACTAAAGAACAAAAAG
s cb4.chrX              21367035  44 - 21540570 -----------------------AAGATAATT----AACTATGCTATCGG--------------------TGGATATA-TGTT-----------------GAATAATAC--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    118058  49 +   118955 -----------------ATTCAAAAggtcattttaaaattgtttcttt--------------------------tacACTACT-----------------GCATAAATC--------------
i caeSp111.Scaffold412  I 10 C 0
e caePb3.Scfld02_62       203485   0 +   783054 C
e caeJap4.Scaffold17495   137651   0 +   161274 C
e caeRem4.Crem_Contig24   711687 2139 -  1162296 I

a score=-1977.000000
s ce10.chrX               991055 13 + 17718866 TTCCCAATGTATC----
s cb4.chrX              21367079  5 - 21540570 --------TTAAC----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold412    118107  5 +   118955 --------GGATC----
i caeSp111.Scaffold412  C 0 I 6
s caeJap4.Scaffold17495   137651 13 +   161274 TTTC----CTATCTTTA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       203485  0 +   783054 C
e caeRem4.Crem_Contig24   711687 2139 -  1162296 I

a score=5845.000000
s ce10.chrX               991068 7 + 17718866 AACTCAC
s cb4.chrX              21367084 7 - 21540570 AACTCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   713826 7 -  1162296 AACTTAC
i caeRem4.Crem_Contig24 I 2139 C 0
s caeSp111.Scaffold412    118118 7 +   118955 aactcac
i caeSp111.Scaffold412  I 6 C 0
s caeJap4.Scaffold17495   137664 7 +   161274 AACTTAC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       203485 0 +   783054 C

a score=178181.000000
s ce10.chrX               991075 162 + 17718866 TTTCGCAGCTGTATCCGGTCGTCAACATGCCCCATATTTTGTCACAACAGTGATGGCAATAAGCTGGCTTTCCGAACGTCTTCTTCACAAAATAATGACCATGATTTGGTCGCATGTCCACCAGATTTGCATCAACATTGTGCCCCTCAGCTGCCATCTGGA
s cb4.chrX              21367091 162 - 21540570 TCTCGCAACTGTAACCAGTTGTCAGCATGCCCCATATCTTATCACAACAGTGATGACAATAAGTTGGCTTCCCAAAAGTCTTCTTCACAAAATAGTGACCATGATTGGGTCGCATGTCCACCAAGTTAGCATCGACATTATGCCCCTCAGCTGCCATCTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   713833 162 -  1162296 TTTCACAGCTGTAGCCAGTTGTCAACATGCCCCATATTTTGTCGCAGCAGTGATGGCAATATGCGGGCTTTCCGAACGTTTTCTTCACGAAATAATGGCCATGGTTCGGCCGCATATCCACCAAATTCGCATCAACATTATGCCCCTCAGCTGCCATCTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118125 162 +   118955 tttcacAGCTGTAACCAGTTGTTAACATGCCCCATATTTTGTCACAGCAGTGATGACAATAAGCTGGCTTGCCGAacgtttttttgacaaaGTAATGTCCATGGTTCGGTCGCATATCCACCAAGTTTGCGTCAACATTATGCCCCTCAGCTGCCATCTGGA
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       203485 162 +   783054 TTTCACAACTATATCCAGTTGTCAACATGCCCCATATTTTGTCACAGCAGTGGTGGCAATATGTTGGCTTTCCAAACGTCTTCTTCACAAAATAATGACCATGGTTGGGTCGCATATCCACCAAGTTTGCGTCAACATTATGCCCCTCAGCTGCCATCTGGG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   137671 162 +   161274 TTTCACAGCTGTATCCGGTTGTTAGCATTCCCCATATTTTGTCGCAACAATGATGACAATATGCAGGCTTGCCAAATgtctttttcaaaaagtagTGCCCATGATTAGGTCTCATATCAACCAGGTTCGCATCCACATTATGCCCTTCTGCTGCCATCTGAA
i caeJap4.Scaffold17495 C 0 I 614

a score=-5424.000000
s ce10.chrX               991237 15 + 17718866 ATATCTCTTTTG---------TAC--
s cb4.chrX              21367253 17 - 21540570 ATCGAACAACTT---------TTTCA
i cb4.chrX              C 0 I 526
s caeRem4.Crem_Contig24   713995 17 -  1162296 AGTATACACTTG---------TGTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118287 15 +   118955 AGATTACTACTA---------TAT--
i caeSp111.Scaffold412  C 0 C 0
s caePb3.Scfld02_62       203647 24 +   783054 AAAATAATATTACTTTACTGTTAT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   137833 614 +   161274 I

a score=-5729.000000
s ce10.chrX               991252 23 + 17718866 -----GTAGAGGAATTTATAAATAA------AAA----------
s caeRem4.Crem_Contig24   714012 39 -  1162296 -----ATAACAAAGATTGACTTGATTGTTTCGGATTAGTTAATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118302 36 +   118955 GGGCGGAACAGAAGATTGTAATCAT------AGACttctaaa--
i caeSp111.Scaffold412  C 0 I 55
s caePb3.Scfld02_62       203671 28 +   783054 GGGcgg----ggaaattgaaa----------aaacgtaaaaa--
i caePb3.Scfld02_62     C 0 I 197
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367270 526 - 21540570 I

a score=-3743.000000
s ce10.chrX               991275 13 + 17718866 GTG-----TTATCCAACA------------------------------------
s caeRem4.Crem_Contig24   714051 48 -  1162296 GTG-----CCAT-TATCAGTGACAAAATTGGTCACTGTCACTGTCAGAGTgtca
i caeRem4.Crem_Contig24 C 0 I 9
s caeSp111.Scaffold412    118393 33 +   118955 ATGGATACTCAT-TAACGCTGACTCTAGTACACA--------------------
i caeSp111.Scaffold412  I 55 C 0
e caePb3.Scfld02_62       203699 197 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367270 526 - 21540570 I

a score=-4453.000000
s ce10.chrX               991288 13 + 17718866 -------TTGCATTTCCCTT----------
s cb4.chrX              21367796 13 - 21540570 -------TTGCATCTGG----------CAT
i cb4.chrX              I 526 C 0
s caeRem4.Crem_Contig24   714108 23 -  1162296 -------tttgatttggttGATTTGAATGA
i caeRem4.Crem_Contig24 I 9 C 0
s caeSp111.Scaffold412    118426 14 +   118955 TCTACACTCCTATT----------------
i caeSp111.Scaffold412  C 0 I 16
e caePb3.Scfld02_62       203699 197 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I

a score=35093.000000
s ce10.chrX               991301 65 + 17718866 ---------CAAACTTACGGCAGAATTTTGATGTTTTTCGCTGTCAAATGAAT-TTCAAGTTAGCATGAGTACAT
s cb4.chrX              21367809 69 - 21540570 CAAGAT-----AACTTACAGCAGAATCGTGGTGTTTCTTCTTGTCAAAACGCT-TTTAAGTTAGCATGAGTACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   714131 74 -  1162296 CAAAATGACAAAACTTACAGCAGAATTGTGATGCTTTTCGGTGTCAGGTGAGT-TTCAAGTTAGCATGAGTACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold412    118456 66 +   118955 ---------AAAACTTACAGCAGATTAGTGATGTTTTTCGCtgtcaaattgaattttaagtTAGCATGAGTACAT
i caeSp111.Scaffold412  I 16 N 0
s caePb3.Scfld02_62       203896 64 +   783054 ---------CAAACTTACAGCagaacagtgat-ttttttggtatcaGATGTGA-TTTAAGTTAGCATGAGTACAT
i caePb3.Scfld02_62     I 197 C 0
e caeJap4.Scaffold17495   137833 614 +   161274 I

a score=1818.000000
s ce10.chrX               991366 8 + 17718866 AACATTCG
s cb4.chrX              21367878 8 - 21540570 TTTATTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   714205 8 -  1162296 AACATTCG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       203960 8 +   783054 AACAATTG
i caePb3.Scfld02_62     C 0 I 1702
e caeJap4.Scaffold17495   137833 614 +   161274 I

a score=492.000000
s ce10.chrX               991374 4 + 17718866 AGCC
s cb4.chrX              21367886 4 - 21540570 CACC
i cb4.chrX              C 0 I 1479
s caeRem4.Crem_Contig24   714213 4 -  1162296 AACC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I

a score=2275.000000
s ce10.chrX               991378 376 + 17718866  
s caeRem4.Crem_Contig24   714217 512 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 304
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I

a score=0.000000
s ce10.chrX               991754 330 + 17718866 GTTTCAGCGGCTTCAGCTTTAACAGATAACATGTAGTAAAGTTTATCAATGTGGTAATTAAACCGTATAAAAAGTAGAGATTTGGTGAGTGCAAACTGTTTTTGGTCAGTGCGAACATCATATCAGCAAAAACAGATTGACTTTTGTGCAGGACACTTGGCCTAAAAACTAGTTTTGATATGCACAACTTAACTTGGAGTTCTTCATTGAATAAGTAAGAATATTTTGGCACAACCACCCTCTGTTACAGTAGGACCGGAACCTAGATGAATTCACGTGACTCACTCACTAAAATGCCAAAAAGCCCATAAAAATTTGACAACCCAAAAA
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I
e caeRem4.Crem_Contig24   714729 304 -  1162296 I

a score=686.000000
s ce10.chrX               992084 152 + 17718866 AAAAGATGAAGAAGAATAAATGAGGAATAAAGAAGTCGTCG--AATTTGGGAAGAGAAGACATTCCAAATTGGCGGCGTCACATTTTTAGAAACGAATTTTTTGACGAGCGAATATGGTA-AATATACTGTTAAAAAGGAATTGCATCtaaaaaa
s caeRem4.Crem_Contig24   715033 131 -  1162296 GGTAATTGAAGGGGGAGAGATGag------aaaaatctttatttttttggaaactgaattttttctaaattgt----------------gaaaaaaaattcatcctGAAATAATCTGGAACAATCTATTAATAGGGTGGGATT--AACCAAAAAA
i caeRem4.Crem_Contig24 I 304 I 137
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I

a score=0.000000
s ce10.chrX               992236 120 + 17718866 tgttattaaaaaaactaaaaattttaataGTAATGAATTTTAGATCTTCAAATTGTTTCTAAAAATAAAAAGAGATTAAGATTAAAATCATTTTGAAAAAGTCAGAAAAACGTTGTACTT
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I
e caeRem4.Crem_Contig24   715164 137 -  1162296 I

a score=-916.000000
s ce10.chrX               992356 329 + 17718866 AATCTCATAAAGTTTAATGAAGACACTAGGGAGATTAGTGATTTCTGCGATTTAGAAATTTGGATTTTCGTATTTTTGACAAAAAAAGAATGGCAAGAAGGC---AAAGACATGGGA--GGGATGTGAGAAG------------------AAAGAAGAAGGAAACGTCAAAAAGC--TTGGGCGTAATCATGCAAAAGTCAAGTCAATGTCGCTAATTTCTTGTGGTTTTTCCT------------TTTCttcgggctctttcgggctctttcggAGCAAAGTGATGAAGGGAATGGAAAAAAATGGAGGGATAAAGTAGAGCAAAAAAGGGAGCGCGGTGAAAAGGGGGAGGTGAATACTC---ACTA
s caeRem4.Crem_Contig24   715301 261 -  1162296 AACCCGAGAAAGGAAAACTAAGATTCTAAGATGAAAAATAG-------GATTGAAAGAGATGGG----------------aaaaaaaCGGGGGAAGCAAAGCTTGAAAGAGAAGGGGTTAGAATCGAAAAAGTGTCTTTTCTCGGcgggaaaaaaagagaaaaagggtaAAGCGCCATTGCGCGTAATCATGCAAAAGTCAAA-----GTcggtaatttat-----tttctgctAAATAAAAAGACTCTCTTCGCCTTATTTTTGAGTGTCCC------AAGTGGTT---------------------------------------------------------------------CTACTCTCAAATA
i caeRem4.Crem_Contig24 I 137 C 0
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I

a score=6317.000000
s ce10.chrX               992685 103 + 17718866 CTTAAGACTCATTTTGTTTCTTTTTATTTTTTCTTCTTTTTTCTGCGTGAATAATTTTTGCTGCAATGTTCAGAAGGGTCCCTACGGCAAACAAGCAGCACCT---------------------------------
s caeRem4.Crem_Contig24   715562 120 -  1162296 CTTAcgactctctctctccttttttgtttctttttcttttttctgcgtgaataattttt----caatgttcacacag------------aagaagaagaaggtccCAGATAGGAGATGAGGGAGAGAGGGAGGTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548       328  82 -    67506 CTAAATACTAACattctttgtttcttcttcttct--ttttttctgcgtgaataaatttt----gaatgttcACACag------------agaaagtagaa------------------------------------
i caeSp111.Scaffold548  N 0 I 4
e caePb3.Scfld02_62       203968 1702 +   783054 I
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I

a score=833.000000
s ce10.chrX               992788 141 + 17718866 AGAGAGACGGAGAA--------------------------------------GAAGCAAAGAAAGAGAGCAGGAGCATGT----------------CTTGCATC----------CACAGGTAAGAAATACCACGTGAATTAGAGAGATGGAAAAGCCCCCAAGATGGAAAACTGCTGTGGCAGCGGCTCTCTCTCTCTCTGCGTG
s caeRem4.Crem_Contig24   715682 161 -  1162296 AGAGGGACAgacgggggggggggggggggagccGGGGTGGGAGGACGGGGCGTACGGATAGAGAAAGACAcaaatt--------------------ctcgttttcagtACCACACACAGGTAAAAA-TACCATGTGAATTAGAGAGAAGC---------CAAGAAAGAAAACTGCTGTGGTCTTGGCGC--------------TG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548       414 133 -    67506 agagaaagaga-----------------------------------------gatagatagagaaagggagagaaTTTTTAACAGTCCCCTTcttatttgtttcttttgc----aACAGGTAGGAAATATCATGGGaattagagagagagatatg--aaaaagaaagaaaactgcTGTGG-------------------------
i caeSp111.Scaffold548  I 4 C 0
s caePb3.Scfld02_62       205670 107 +   783054 agagagaaaga-----------------------------------------gaatgagaggaagagagaaaaaatgttcagt-------------tttgttttcattga----aacaggtataaa--atcatgaaaattagGGAGAGACGTTAG--AATATGGGAG-----------GG-------------------------
i caePb3.Scfld02_62     I 1702 C 0
e caeJap4.Scaffold17495   137833 614 +   161274 I
e cb4.chrX              21367890 1479 - 21540570 I

a score=-460.000000
s ce10.chrX               992929 2 + 17718866 GC
s caeRem4.Crem_Contig24   715843 1 -  1162296 G-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495   138447 2 +   161274 GC
i caeJap4.Scaffold17495 I 614 C 0
e caePb3.Scfld02_62       205777 0 +   783054 C
e cb4.chrX              21367890 1479 - 21540570 I
e caeSp111.Scaffold548       547 0 -    67506 C

a score=54615.000000
s ce10.chrX               992931 176 + 17718866 CACAAGCGTAAACAACAAGATGGCAACGAAAGACGCCTTCAGTAGCAACAAACGACGACGGCAACCGAGGGCCCCGCAGCGACGACGACGACGACGGCAGTAC--------GGAGAGCACGGAG--CACGGAGCACGCAGTCAG---CTCTC--TC------CTTCTTGCCC------CTACTCTTCTCTTTCTTGATTCCCT
s cb4.chrX              21369369 139 - 21540570 CACAAGCGTAAACAACAAAATGACAACGAAATACGCCTTCAGCGG----------------------------------------------------CAGTAGCCGCGGCACAGCAGTACTGAAC-CATGGAGCACGATGTCAG---CTCTCAGCC--AGTGCTCCGTGGCC------GCacccttctttctcttctttttct
i cb4.chrX              I 1479 I 6210
s caeRem4.Crem_Contig24   715844 117 -  1162296 -GCAAGCGTAAACAACAAAATGGCAACGAAATACGCCTTCAGTAG------------------------------------------------------------------CAGCAGTACGGAG--CACGGAGCACGCAGTCAG---CTCTCGGCC--ACTACT------CC------GCacccttcttctcctttttcctct
i caeRem4.Crem_Contig24 C 0 I 76
s caeSp111.Scaffold548       547 132 -    67506 --CAAGCGTAAACAACAAAATGGCAACGAAATACGCCTTCAGTAG----------------------------------------------------AAGTAC--------GGAGAGCACGGAGCACACGGAGCACGCAGTCAGCCTCTCTCGGTC--ACTactccttttct------ct-ccttctccacTTTCCTATCTTC
i caeSp111.Scaffold548  C 0 I 2
s caePb3.Scfld02_62       205777 133 +   783054 --AAAGCGTAAACAACAAAATGGCAAAGAAATACGCCTTCAGTGG----------------------------------------------------CAGTAC--------GGAGAGCACGGAG--CACGAAGCACGCAGTCAGACTCTCTCTAACGAATATCTTTGTTACT------CTACCGtctcttcccttctttttct
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17495   138449 114 +   161274 TGAAAACGTAAACAACAAAGTGGCAACGAAATACGTCTTCAGTCG---------------------------------------------------------------------------------TA-GGAGCACGCAGTCAG---CTTTCCTTC--GCTACTCCCCTTCAGAGCTGCCACTCTTCCTTTCGTGTTCTCT--
i caeJap4.Scaffold17495 C 0 C 0

a score=41764.000000
s ce10.chrX               993107 105 + 17718866 CCACACCACAC---TC-CGAAACGCCGGAGAGAAAACGCACAAAGAGCCGATGGG---GAGTGGA-GAAGGAGGCGAAGCTAACTGAAATCTCCCTGAATGACATGCTATTTC
s caeRem4.Crem_Contig24   716037 112 -  1162296 ccGTCCTATTCCCATC-CGAAACGCCTGAGAGAAAACGCACAAAGAGCCGATGGGAGTGAGGAGGCGAGGGGAGAGAAGCTATCTAACATCTCCGTGAATAACGTGTTATTTT
i caeRem4.Crem_Contig24 I 76 C 0
s caeSp111.Scaffold548       681 111 -    67506 TTTTGCTATTCTCATC-CGAAACGCCTGAGAGAAAACGCACAAAGAGCCGATGGGAGTgaggggg-gggggagggAAAGCTATCTAACATCTCCTTGAATACCATAATATTTC
i caeSp111.Scaffold548  I 2 C 0
s caePb3.Scfld02_62       205912 105 +   783054 tctcaataTTCTCATC-CGAAACGCCCGAGAGAAAACGCACAAAGAGCCAATGGGAATGA-------AAAGAGGGAGCCCTATCCAACATCTCCTGGAATACTATTCTATCTC
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17495   138563  86 +   161274 -----CTTCTCTTATAGCGAAACGCCTGAGAGAAAAGGCACAAAGAGC--ATCGG--------------------AAAGCTCACAGAAATCTCCACGAATTACATGCTATTTC
i caeJap4.Scaffold17495 C 0 I 2368
e cb4.chrX              21369508 6210 - 21540570 I

a score=-2076.000000
s ce10.chrX               993212 10 + 17718866 T------CATGGGGGT
s caeRem4.Crem_Contig24   716149  5 -  1162296 TTGCT-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548       792 16 -    67506 CACCAGCCATGGGGGC
i caeSp111.Scaffold548  C 0 I 33
s caePb3.Scfld02_62       206017 16 +   783054 TTTTGACCGTGGGGGC
i caePb3.Scfld02_62     C 0 I 4
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I

a score=-2510.000000
s ce10.chrX               993222 28 + 17718866 ---ACATCGAAGGGGTGCGGCGGGTGAGGGA-------
s caeRem4.Crem_Contig24   716154 15 -  1162296 ---CCACC-----------------GAGGGAAGAA---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       206037 38 +   783054 ATGCCGTCTCGCTGGACGTgcatgaaaaagaagaagaa
i caePb3.Scfld02_62     I 4 C 0
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548       808 33 -    67506 I

a score=58796.000000
s ce10.chrX               993250 439 + 17718866  
s caeRem4.Crem_Contig24   716169 451 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 952
s caeSp111.Scaffold548       841 367 -    67506  
i caeSp111.Scaffold548  I 33 C 0
s caePb3.Scfld02_62       206075 407 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I

a score=100.000000
s ce10.chrX               993689 1 + 17718866 G
s caePb3.Scfld02_62       206482 1 +   783054 G
i caePb3.Scfld02_62     C 0 I 358
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      1208 0 -    67506 C
e caeRem4.Crem_Contig24   716620 952 -  1162296 I

a score=265.000000
s ce10.chrX               993690 10 + 17718866 AGAAAAGTTG
s caeSp111.Scaffold548      1208 10 -    67506 atGGAAGATG
i caeSp111.Scaffold548  C 0 I 464
e caePb3.Scfld02_62       206483 358 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeRem4.Crem_Contig24   716620 952 -  1162296 I

a score=0.000000
s ce10.chrX               993700 2534 + 17718866  
e caePb3.Scfld02_62       206483  358 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      1218  464 -    67506 I
e caeRem4.Crem_Contig24   716620  952 -  1162296 I

a score=501.000000
s ce10.chrX               996234 9 + 17718866 AATACATaa
s caeSp111.Scaffold548      1682 9 -    67506 aatgcagaa
i caeSp111.Scaffold548  I 464 C 0
e caePb3.Scfld02_62       206483 358 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeRem4.Crem_Contig24   716620 952 -  1162296 I

a score=1237.000000
s ce10.chrX               996243 6 + 17718866 aaaaca
s caeRem4.Crem_Contig24   717572 6 -  1162296 aataca
i caeRem4.Crem_Contig24 I 952 C 0
s caeSp111.Scaffold548      1691 6 -    67506 aaaaca
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       206483 358 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I

a score=23267.000000
s ce10.chrX               996249 190 + 17718866 aaaaaaaacaaaaaa-------------caaaacaaaaaaaCGCTTTTCC------------GAGTTAGAGTTCTGCGGG--CAGGCTTCAACCAATTTCCTGGACCTCACACAACATAAATCACAGG----CTGGAGGAGCT----CAATGAGCCGCACTAAAGGCTTTCTTCCG-----------------GAGTGGTAGAGACGATAAAGAAGAAGATGAACTGAAT----CGGAATCTAAAA
s caeRem4.Crem_Contig24   717578 179 -  1162296 gaaaaaaacaaaagcttTCGGATGAGA-AGAGGGGATATGAAGCTCTCCT---------------CTGGAGCTGC---GGCACAAG-TCTAACCAATTTCCTGGACCTCACACAACATAAATCACAGG----CTCGGGGCGCTGAACCAATGAGCCGCACTAAAGGCTTTCTGCAG-------------------------------------------GAGAACTGAATCCGCCGGAATCTAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      1697 185 -    67506 ----------aaagctATTGGaaggaatgaaaagaaaatga-------------------------------------ag--caaA-TCTAACTAAATTCCTGGACCTCACACAACATAAATCACATAGGGTTCTGTGCCTCTGAGCCAACGATTTGCACTAAAGGTTTTTGTtggtaaaa------aaaaagaaaaaaaggagagga-aaagagaaaggagaaCTGAAT----TGGAATCTAGAA
i caeSp111.Scaffold548  C 0 I 3060
s caePb3.Scfld02_62       206841 224 +   783054 agaaaaaacaaaagcttttaagag----aaaaatagaatgaagctctctcacttttttttctttgccgGAGCTTC---AG--CAAG-TCTAACCAATTTCCTGGACCTTACACAACATAAATCACAGGCTGCCTTGAGCCAATGGGCCGAGG-------CTCAAGACTttcaacagagaaaaatgcgaaaaaggaaaaggagaaaaaa-aaagaaaaaagaaaactgaat----tggAATCTAGAA
i caePb3.Scfld02_62     I 358 I 10331
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I

a score=465.000000
s ce10.chrX               996439 130 + 17718866 AAATGAAGAAGGGAGGAAATTGGAAAACGACGGAGTGGTATCAAAGTCACCAATCTCCAAGAGAAAAGAGAAAGGATTATTACGTCGGATTTCTATTTAATTTTGTATCCAATGGCATAATGCAAAAATT
s caeRem4.Crem_Contig24   717757  94 -  1162296 AGCCTCAGGA------------TAAACGGGCAGAG------------CATCAATCTCACGGAGAAAA--------ACTatgacgacga----cgacgtcaCTTTGAAAGTAGTGGGGTAAAGTAAAAATT
i caeRem4.Crem_Contig24 C 0 I 3196
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      1882 3060 -    67506 I

a score=0.000000
s ce10.chrX               996569 5864 + 17718866  
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      1882 3060 -    67506 I
e caeRem4.Crem_Contig24   717851 3196 -  1162296 I

a score=2306.000000
s ce10.chrX              1002433 55 + 17718866 GGTTTTGAAACTGGTGTACTTATGACATAACGAGTGATTAATGTTTTGCTCTATT
s caeSp111.Scaffold548      4942 48 -    67506 GATTTCACAACTGGTGTACTTGTGACATAAC------TTGAT-TTTTActctttt
i caeSp111.Scaffold548  I 3060 I 362
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeRem4.Crem_Contig24   717851 3196 -  1162296 I

a score=0.000000
s ce10.chrX              1002488 1165 + 17718866  
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      4990  362 -    67506 I
e caeRem4.Crem_Contig24   717851 3196 -  1162296 I

a score=526.000000
s ce10.chrX              1003653 23 + 17718866 ATAACTTTCCCCTCTTGAAACGT
s caeSp111.Scaffold548      5352 15 -    67506 ATGACTTTCC--------AACGC
i caeSp111.Scaffold548  I 362 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeRem4.Crem_Contig24   717851 3196 -  1162296 I

a score=10661.000000
s ce10.chrX              1003676 182 + 17718866 ---CTTCACCTTGACTGTA--GCTTTTGTTTCTAGCTGAATCTGAATCCCAATTGTAGGT-------------TTGTTTTCCTTCTACCATTCCCTT------TTT---------------------------ACCGCGCTCATTGTATGCGGGAAGTG---GC-GGAGAGAGGAAGGGCGAGGTAAAATAGCCAGTTTCCCCTTTCAACGAAAGAGGGGCGTATAACCTGTGTGCG--
s caeRem4.Crem_Contig24   721047 222 -  1162296 ---CTTCACCTTGATTGTACCCCTTTTGTCTCTAAA-GTACCTTCCACCCAATTATAGGTTTGACATGAgacattgttttcatttctccaTTCCCTT------TTTCTGCCCTCCTATATAGAACCCAACCCAGCCCCATTCACTGTA-----AAGATGCATgcgggaaaaaagaaaagagaggtAAAATAGCCAGTTTCCC--TTCTATAGGGGCGGTACTTAGTACCTATGTGCGCG
i caeRem4.Crem_Contig24 I 3196 C 0
s caeSp111.Scaffold548      5367 187 -    67506 CTACTTCACCTTGATTATa-actttttgtctttcta-GTGCCTT---GCCAATTATAGGT---GCAT---ACAATGTTTTCATCT-TCTATTTCCTCCCACAATTCCTCTTTACCTATATA--------------------CAATGTA-----GAGATGCATGC-GGAAATAGAAAGGGAGAGGTAAAACAGCCAGTTTCC--------TAGGGGCGGCGC----TACCTGTGTGTG--
i caeSp111.Scaffold548  C 0 I 480
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I

a score=-1894.000000
s ce10.chrX              1003858 532 + 17718866  
s caeRem4.Crem_Contig24   721269 395 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21369508 6210 - 21540570 I
e caeSp111.Scaffold548      5554 480 -    67506 I

a score=7724.000000
s ce10.chrX              1004390 40 + 17718866 TCCGGCCAAGTGATTATTGCTAAAAATACACAAGGTAAGT
s cb4.chrX              21375718 40 - 21540570 TTCTGCCAAGTGATTATCGCTAAAAATACTCAAGGCAAGT
i cb4.chrX              I 6210 I 427
s caeRem4.Crem_Contig24   721664 38 -  1162296 --TGGTCAAGTTATTATTGCTAAAAACACAAAAGgtaagt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e caeSp111.Scaffold548      5554 480 -    67506 I

a score=-966.000000
s ce10.chrX              1004430 194 + 17718866 TAACATTTAAAATTTATAAA-ATTGATATTTCATTCTTTCCGTT---GTG------TAGTTT------------GTTTTCCAATT--------GCTGTTTGAAAATTTTGAAATTTTTTTAAAACTAAGGTTTTAAGTTTCGATTTTTTATGATT-TTCTCAACATTTTTTGT---------------AACCAATAATAATTTGAGAAAATTT-----TTTGAATAATTTTTCTCCAATTTTGTT
s caeRem4.Crem_Contig24   721702 241 -  1162296 t----tttattgtttttgtatgCTTCTATGTTTTTCTGTCTATTTATGTGAACTCTTAGTTCATAATaaagaaagttttcaaattcattatGTATCCTATGGAAAAATACATGTTtccatgaaaaatgagcaatatTTTTCGAATCCCGAAAATTCTTGCCACCATACTCTGTTCATGTAGTGTTACTACCTTAAAGTTGTGTTAAAACATTTGAGGACTTACAAAACCTTTCTCAAGTCTTATT
i caeRem4.Crem_Contig24 C 0 I 246
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21375758 427 - 21540570 I
e caeSp111.Scaffold548      5554 480 -    67506 I

a score=0.000000
s ce10.chrX              1004624 240 + 17718866 GTTTAGAATTCATTCATGTCTTTCAAATTGACCGAAAAATTAGCAGAAAAAAGCACAGTTGTAGATCAAACAACTGTTTTTTAACCATTTATTTTTGATCAATATTTTTAGAGTTTTATGCTAAACGTTCAGAAAAACCTAAACTGCTACTGAAAACCATAAACCGGCGTGGCATGTGTGCACAGATTTTAAAAATTTGGTGTAAATTTTGAAATCTCTTTTGAAATCGCCACACAGTTT
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21375758 427 - 21540570 I
e caeSp111.Scaffold548      5554 480 -    67506 I
e caeRem4.Crem_Contig24   721943 246 -  1162296 I

a score=-629.000000
s ce10.chrX              1004864 135 + 17718866 CCTTAAAATTTTCAGTTTGGCTTCAAAAAATTCCAATAAAATAATAGCATTTATTTTTTTTTGTATGATTAACAGTTTCACA--------------AAAGTATAGTTTATT------AAACTTCCCTATTATGAAACCC--AATTTATTACACCAAA
s caeRem4.Crem_Contig24   722189 144 -  1162296 ctttaaaaatttgaa---------aatatattgttttGAACTCAC-GCTGTTATTTATTTCTAGATTGTTTACAGTATAccatgaaaaataaaaacgaacTACAGACCATTTCATCCAAATTACTTCCGGATCAAATCCTCCGtttattttgtt---
i caeRem4.Crem_Contig24 I 246 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21375758 427 - 21540570 I
e caeSp111.Scaffold548      5554 480 -    67506 I

a score=1605.000000
s ce10.chrX              1004999 71 + 17718866 ------AGTCATTTAGTATCTAAAGCTTTCCATCGGAAA--CGTTTACTAATTGTTATAGAATAACCAAGT----GTCTTTTC---
s caeRem4.Crem_Contig24   722333 78 -  1162296 tgatttAGCTGTCCTCTCCCTCGCAAGCTTCATTGAGAAAACGTTTGCTAATTGTCATAAATT-ATCTAGT----GGGTTTTT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6034 79 -    67506 ------AGTagtttactttttcaaatgctcTATTTGAAAACGCTTTGCTAACAGTCATAAAAT-GTgtattattcaaattttctcc
i caeSp111.Scaffold548  I 480 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21375758 427 - 21540570 I

a score=26671.000000
s ce10.chrX              1005070 373 + 17718866 ----------------------GACTTTTTCTCTATCTT----TCC--------------ATTATTCCAGGCGACTTTCTGT------CTTTTTCCGTCGCTTTCCTCTAACCTAGTAGTAATAGGAGTAGTACTCCAACCCAACTCGTCATAATTATGCC-AGCAGGGTAATTATGATTCCGAATCGTT-----GTTGGTAG------------------GTGG--------GTGTCGCATGCCGGTATTGTGACAGTAGCGGTAATTATAAAGAAGAC-------------TGTGTGTGTATGTATAGATTTGAGTTG------AATTGGTGGAAAAGAGAGACACAAG---AGAATAGAT--------TTATACTTTTTGCAAGGAATACCTTTTCTTTCGTACGCATCTCAAAACAAGGTCATTG---GG--AAATGGGTAATTTGAGCTGGGAGTTGATGAGTTGAAACAAGGAAAAT---TGT
s cb4.chrX              21376185 414 - 21540570 GacttcatctctttttttctgcaacTATTTCTTTTCTTCCGCGTTCCCTATTTCCTCGATTTCCATCTGTGCGAC-TTCCAT------CATATTTCA------------ACTGTAGTAGTA------------------CCCACCTCGTTATAATTATGCCGGG--GGGTAATTATGTCC-TGAATAGTAGGAAGACAGATAGGTAGGTAGGTGTAtgcaaagagaaagaga-atgtCGCATGCTGGTACTTCGACTGTAGCGGTAATTATATAGAAAACTACCCAgagagtgtgtgtgtgtgtgtatatATTTGCTTGGTCTCATCGTAAAGAGAACGGAG-GAGAC------TGAATAGGTATTTTGAATTGTACTTGC--CAACGAATAAG-------------------CATTGCAAGGTCACTG-ACAG--AGACGCGTGGTTTTTGGTATATGGAAGTTATTGAATTTGAAGAGAATTAT---
i cb4.chrX              I 427 I 73
s caeRem4.Crem_Contig24   722411 334 -  1162296 -ACTTTCTATC-TCTATTCCACTGCTGTTCCTTTTCCTAC---TTC--------------TTCTGTCTAGGCGAc-ttctcttcctcctctttttcg------------AGCGTAGTAGTAGTAC--------------CCCATCTCGTCATAATTATGCC-AG--GGGTAATTATGATT-TGAATAGtagaggaagagaaag------------------agagaaggggAGGTGTCGCATGCCGGTATTGTGACTGTAGCGGTAATTATAAAGA---------AGAGAGACTACCTGAGTGTGGATTCAGTTGGatag-------gaaaagagaaaatagagagacA-----TGGATAGAT--------TTATACTTCG--CAAGGAATGCG------------CGCATCTCAAAACAAGGTCATTGAAAAG--AGAC------------------------------------AGAGAGC------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6113 349 -    67506 --------------gattcttc-gttcttccttcttatt----ttc--------------ttcattctaggcgac-ttctgt------ctttttttg------------tgCGTGGTAGTTCTCTG------CCTCTCAACCAACTCGTCATAATTATGCC-AG--GGGTAATTATGATT-TGAATAGTA-----ATAGGTAG------------------GAAGAGACAGAGGTGTCGCACGCCGGTATTGTGGCTGTAGCGGTAATTATAAAGAAGACTACTCACA-----TCAGTGAATGCGTA-----GTGAAtagacagaaagaaaaagagaaagagagagagaatgagaggaTAGAT--------TTATACTTTT--CGAGGAATACA------------CGCATTTCAAAACAAGGTCATTGAAAAGTAGGATAGGTAATTTGAGCAGCact-----------------agaaaaa------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I

a score=-2340.000000
s ce10.chrX              1005443 53 + 17718866 AGTAACGGTTTGGCCAGGGAATTGGCGAGAATTGACAAGTATTCAGTACAACT
s caeRem4.Crem_Contig24   722745 33 -  1162296 GGTAA---TTTGAGCACG----CGGGGGAAATTGATGAGT-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6462 13 -    67506 --------------------------ggaaatctaTGAG--------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I
e cb4.chrX              21376599 73 - 21540570 I

a score=-24273.000000
s ce10.chrX              1005496 137 + 17718866 TCTCTTCGAAAAAGTGGAAAAACCCGGTGACCATCATTGGAGCGCGCTTTCACAGCTTTCGAAAA-------TATTTTGTTAAT----GTAACAA-----------------------------------------GTATACGAAAAATTGGTAAAAATGTATCGATAGCTTTAGAGATCAGCCAATGT------------
s cb4.chrX              21376672 165 - 21540570 TCACATCTCAAAAGTGAAA-------------TTGAATGAAACCCG---TAATAACGATCAATAGATCGATAAAAGGCACTAATGCTGATAACTGAGAGGCCGTATTCATGCACATATTCAATGGAAAATATCTCTTTTTCGGAAA-----------------CACTATTTCGAACTTTCAG---ATCTATCCATTCATGC
i cb4.chrX              I 73 C 0
s caeRem4.Crem_Contig24   722778  42 -  1162296 --------------------------------TCGAATCGAAC----------AACGGGTAATAG-------GAAGGAACGAGT----ATAACGG----------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6475  48 -    67506 ------------------------------------TTCAAAC-----------------AATAG------------------T----GTTACGA-----------------------------------------TTTCACAAAG-----------------TAAtagattcaaaattca--------------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       207065 10331 +   783054 I
e caeJap4.Scaffold17495   138649 2368 +   161274 I

a score=-37805.000000
s ce10.chrX              1005633 107 + 17718866 ------TAGTTAACAAAGTGAAACAGTACAA--------ATACATCCATTTTTTC------AGAAA-------ATTTC----------------------------TGGAATTAATGAAATTGTCAGATATAACAAATCAATAAGT------------------------------------------------------TTTATACAACT----CAATA
s cb4.chrX              21376837 190 - 21540570 CAGCTGTGATGAAAACAATCCAAAATTgtaattcttatttttcatgaattttctggatacaaaaaaagttattttgtt----------------------------TGTAATTGA--ACAATAACATCagaaaggcaaaaaaaaaccaagggCAAGGCGAATGCAGATTTTATAGTAtcattcagaagaaaaaaaaacagcttaGACAATTATTCGAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722820  66 -  1162296 --------------------------------------TTTGTATGAATGACCTA------AGAAA------TTTATT----------------------------TGGAGTAGA--CCattgaaatataaaatggaaaaccaaac--------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6523  48 -    67506 -------agtttGCAATACAAGAAAAACTTA-----------------TGCTTCA------AAAGA------TATGCC---------------------------------------ATATTA-------------------------------------------------------------------------------------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       217396 129 +   783054 ------TAGTTCAAACAAACGGAAACAATTA-------AGTACAATggtatttca------aagaaatt---tatATCGCAATCACTTGATAATCTGAGTTGAAAGggtaatcaa--aaattaaaataaa-----caGAAGTGAAC-----------------------------------------------------GTTCACAGAACT---------
i caePb3.Scfld02_62     I 10331 C 0
e caeJap4.Scaffold17495   138649 2368 +   161274 I

a score=89957.000000
s ce10.chrX              1005740 129 + 17718866 ATCTTTTTCAGTAACTCCCCGATGTGGTTCTCAGCTTATTTCAATTGAAGTCAACTTTGACCCGACCCAACTTCCCGGTGGAAAGTTCACAGATTGGATTATTGTCGGAGTTTCAGGTTTTAGAAAAAA----------
s cb4.chrX              21377027 121 - 21540570 ATTCGTTTCAGTCACACCTCGTTGCGGATCCCAACTCATTTCGATCGAGCTGAATTTTGATCCTACACAACTTCCTGGCGGCAAATTTACTGACTGGATCATTGTTGGAGTTTCTGGCAAG------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   722886 119 -  1162296 --tttttttagtCACACCACGATGTGGCTCACAACTCATCTCGATAGAAGTCAATTTTGATCCCTCTCAACTCCCCGGAGGAAAATTCACAGATTGGATCATTGTTGGTGTATCAGGTAGT------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      6571 123 -    67506 ------TTTAGTCACACCCCGATGTGGATCTCAACTTATCTCCATCGAAGTCAATTTTGATCCCACTCAGCTACCTGGCGGTAAATTCACAGACTGGATTATTGTTGGAGTTTCAGGTAGTTTCCAATG----------
i caeSp111.Scaffold548  C 0 I 3
s caePb3.Scfld02_62       217525 127 +   783054 --GAATTTCAGTAACACCTCGATGCGGCTCTCAGCTGATTTCAATTGAAGTGAATTTTGACCCCACACAACTACCTGGCGGAAAATTTACAGACTGGATCGTTGTGGGTGTTTCAGGTATTTGTAAAAA----------
i caePb3.Scfld02_62     C 0 I 30
s caeJap4.Scaffold17495   141017 139 +   161274 ACCTATTCCAGTCACTCCTCGCTGCGGTTCACAGCTTATTTCAATCGAAGTCAACTTCAATGCAAGTCAACTTCCAGGTGGAAAATTCACCGACTGGATCATAGTTGGAGTTTCCGGTAGAGTAAAAgcttaaacaaaa
i caeJap4.Scaffold17495 I 2368 C 0

a score=-9414.000000
s ce10.chrX              1005869 33 + 17718866 CAATT----CATTTAGCTCCCAATTTTTCATTAATTC-----
s cb4.chrX              21377148 37 - 21540570 TTTTTTCCGCTTCAGGTATACAGTTGAACATCGTTTT-----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   723005 33 -  1162296 CATAT----ATCCTGGAACacattgatattttttttt-----
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold548      6697 22 -    67506 --TAT----CTCATGATGTAC---------TCAATTT-----
i caeSp111.Scaffold548  I 3 I 3
s caeJap4.Scaffold17495   141156 21 +   161274 ---------------------attattatcatgtttttttaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       217652 30 +   783054 I

a score=186351.000000
s ce10.chrX              1005902 298 + 17718866 AGGACGTCCGGAGTGCCGACTACGCGGAAATGGAGAAACAAAGTATATTATTGAAATTGCTGTTTTTAATGATCCCTGCTTAACACAAATAGTGAG------CTAGTTTTC---TGTGAC-----CCAA----------TTGTACAAAACAAAT------------------------------------TTCCAGCCTGCTCGAAATGTGTTCCAGAATAGAATTCGGATTGGTAAGAATCCAGTGGTAATATTGGAAGAAGACCAATCCGTTACTGTCAAATGTATATATGGCCTGCCAACTGTGGAAACTATGACCCTTCCAATTATAAACTCAAATTTCAATATTGACAAGTAA
s cb4.chrX              21377186 299 - 21540570 AGGAAGACCTGAATGCCGTCTTCGTGGCAATGGTGAAACCAAATACATTATCGAAATAGCAGTTTTCAATGATCCGTGCCTCACGCAAATTGTA--------TGAGTGTTC---atccaa-----ttaaaaatt----taatcatCAGACA---------------------------------------TTTTAGCCAgcacaaaatgtttttcaaaatcgcaTTCGAATTGGTAAAAATCCAGTGGTCATCCTAGAAAAAGATCAATCAATTACTGTAAAATGTGTTTATGGGCTACCTACAATTGAGACAATGACGCTCCCTGTCATAAATTCTAACTTCAATGTGGACAAGTAA
i cb4.chrX              I 1 I 32
s caeRem4.Crem_Contig24   723042 304 -  1162296 AGGACGACCGGAATGCCGTCTCCGTGGTAATGGCGAAACAAAGTATATCATTGAGATAGCTGTGTTTAACGATCCATGTTTGACACAAATTGTAAGCACC--TGAGATTTCGGGAATAAA-----ATGGAactt----gcgtttt----tt---------------------------------------tttcagccagccAGAAATGTGTTCCAAAATAGAATAAGAATTGGGAAAAACCCAGTGGTAATATTGGAAGAGGACCAGTCAGTCACTGTTAAGTGTGTGTATGGCTTACCAACTGTTGAAACAATGACTCTACCAATTATCAACTCTAATTTTAATATTGATAAGTGA
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold548      6722 308 -    67506 AGGCCGCCCTGAATGCCGTCTCCGAGGTAATGGAGAGACCAAGTATGTAATAGAAATATCTGTTTTCAATGATCCCTGTTTGACTCagattg----------tgagttttt---ttcaag-----ttaatAATT----ATGACATAAAATACATATAATTAA----------------------------TTACAGCCTGCCAGAAATGTCTTTCAAAATCGGATCCGTATTGGCAAGAATCCGGTAGtgattttggaagaagatcAATCTGTTACTGTGAAGTGCGTATATGGCTTGCCGACAGTAGAAACCATTACTTTGCCAattataaattcaaatttcaatattgaaaagtga
i caeSp111.Scaffold548  I 3 C 0
s caePb3.Scfld02_62       217682 340 +   783054 AGGTCGCCCGGAATGCCGACTTCGAGGAAACGGAGAAACGAAATATATAATAGAAATAGCAGTTTTCAATGATCCTTGCCTAACTCagattg----------taagttttt---ttttaggatttccaatggtt-----ttttacgaacttggcctattttagttgttttcgtcattttttttttcgtttttccagcCTGCTCTAAACGTATTCCAAAATCGAATTCGTATTGGCAAAAACCCAGTCGTAATATTGGAAGAAGATCAATCAGTTACTGTGAAGTGTGTCTATGGGTTGCCTACAGTAGAGACAATGACTTTGCCTatcataaattcaaatttcaacatCGATAAGTGA
i caePb3.Scfld02_62     I 30 C 0
s caeJap4.Scaffold17495   141177 305 +   161274 aggtagACCAGAGTGTCGCTTGCGAGGAAACGGAGAATCAAAGTACATAATTGAAATAGCGGTGTTCAACGATCCGTGCATGACACAAATAGTAGGCTTCAAAAAATCTGT---CATAAA-----CAAACACtgtatgatttttt---------------------------------------------ttacagcCGGCTCATAACGTGtttcaaaacaaaattcgaataggaaaaaatcctGTCGTTATATTAGAAGAAGATCAGTCAATTACTGTGAAATGTATTTACGGATTTCCTTCTGTGGAAACAATGGCGCTGCCAGTTATTAAATCAAACTTCAACATAGATAGGTAA
i caeJap4.Scaffold17495 C 0 I 3057

a score=-10279.000000
s ce10.chrX              1006200 31 + 17718866 GCTGCAAAATAAGCCAGACACATCACAGACG-----------------------------------------
s caeRem4.Crem_Contig24   723346 48 -  1162296 ------------------------GTAgacataattttcagctcttctcCTTTTTAAAACTGGaagtttact
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold548      7030 33 -    67506 ------------gttg-CCAAGTAATAGATatggaaat-----------------------gaaagttt---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       218022 32 +   783054 ------------GGCATCCGATTCAAAAACAGGTGTAT-------------------------AACTTG---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377485 32 - 21540570 I

a score=16197.000000
s ce10.chrX              1006231 105 + 17718866 TTTCAGCTTTGGAC-----ACCCTGAAGCGGAAATTCGTACAACATCTTCAAATTCTTCGGATCTATCATCAAGCATATCTCAATCAAGAGCTAGTTTAAGTGTAGACGA
s cb4.chrX              21377517  78 - 21540570 tttcagttttgcg--------------------------------TTTTCGAATCATTCCGAACAGTTTTCAACTAATTCTCCGTCAGAAGCTAATTTCAATATCAACGA
i cb4.chrX              I 32 I 130
s caeRem4.Crem_Contig24   723397 102 -  1162296 ttccaGCTTTGCAC-----ACCCGGAGGCTGAAATTCGT---TCTTTCTCCAACAATTCAGATCAATCAGCAAGTATCTCTCAGTCTCGACCAAATTTCAACGTCGATGA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold548      7063 104 -    67506 ttatAATTAAGCGCCGGAAATGCAGACACACATATACAA------GCACCAAAGAACTCAATGCAACTCTCTGGCTTTACACAACCAGGAACAAGCCTGAATGTAGATGA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       218054  99 +   783054 TTTCAGTTTTGCTC-----ATCCTGAAGCCGAAATACGA------CCTTCCAATAATTCTGAACTATCTTCAAGTGCGTCGCagtcaaaaacaagtttgagTGTAGACGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=-1732.000000
s ce10.chrX              1006336 17 + 17718866 GAGCACAAAAGTGAGCT----
s caeRem4.Crem_Contig24   723499 21 -  1162296 ATCTGTAAAGGTATTATATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7167 17 -    67506 TTCAACTAGAGTGAGAC----
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       218153 17 +   783054 GGCTACTGGGGTAAATT----
i caePb3.Scfld02_62     C 0 I 418
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I

a score=629.000000
s ce10.chrX              1006353 28 + 17718866 --TTTATGTTTTCCAGTTTAAAAAAATCAA
s caeRem4.Crem_Contig24   723520 27 -  1162296 --GTTACTTTTCTAAATTAAAACAAACTA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7184 26 -    67506 ACAATAC----CTCAGttaaaaaaagtcaa
i caeSp111.Scaffold548  C 0 I 83
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I

a score=160.000000
s ce10.chrX              1006381 3 + 17718866 TTC
s caeRem4.Crem_Contig24   723547 3 -  1162296 CTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I
e caeSp111.Scaffold548      7210 83 -    67506 I

a score=0.000000
s ce10.chrX              1006384 451 + 17718866 GATTAGTGTTcaattatcatagcaaaactttaaaaaaacattgaaatttattgaaattaagagctgacccttacttaattttcgcaactcaaaattttgaaattcaactaaaaatcagtattttctacgtatttttttatttgtattcgaacactgtcgtggattaaacatgcgaaattgATAATTATATTATTAATGAGAATAATATAAAAGCAATTAAATACTATGAGAGACCCCTTAGCGTTTGCTCATTGGAATAGACATTGAGAGTGGCTCTCAGTTACAATCACCTGCAGAGGTAAGAACAACAGAGCAAGAGGGAAGACTGTAGACCATAAATTGTATTATTGTGAGTATAATAAACAGGCAAACATGCCGCATATCTAGATCAAACTATAGATAAGACTTATTTTGCGCACAGGCCCACTCGAATATCATATGTAAGTAACCA
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I
e caeSp111.Scaffold548      7210  83 -    67506 I
e caeRem4.Crem_Contig24   723550   0 -  1162296 C

a score=2213.000000
s ce10.chrX              1006835 155 + 17718866 ATCAATATTGGTTTCAGGAATCCATGCACCAA---TCATTTGAAAACAGCGAGTCAATTGATAGCAACCAGAGAGGT------------ATTTTACATATTGAATTTCACGTTCATTTCATATTGACCCGGAATTTCAGCGACTCAAGTGAGGGACT---CTTCAAATTTCGG
s caeRem4.Crem_Contig24   723550 158 -  1162296 atccatgaaagttacaggaaTCAGTACACCCAGCACCATTCGAAAATAGTGAATCCCTGGACGCTCGTCAACGAGGTTCATAAAAGGATATATTATTTat--aattcttcatttttct-------------attttcagaaactaaaGTCACcgatttttctccaaattctgG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I
e caeSp111.Scaffold548      7210  83 -    67506 I

a score=484.000000
s ce10.chrX              1006990 16 + 17718866 TGGGACTCCCAATCTT
s caeRem4.Crem_Contig24   723708 13 -  1162296 ---TATTCCTCAACTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7293 16 -    67506 TGAAAACCCGCAACTA
i caeSp111.Scaffold548  I 83 C 0
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21377595 130 - 21540570 I

a score=7636.000000
s ce10.chrX              1007006 166 + 17718866 TTGCCAACTCAAGGTTTCAACTCTGAACAATTTGCTGCAACAACTTTACGAAATGGGCAAAACATGAATGGAAATTGGGAAGCAAATCGGAATACGAATGCTCCGAATAATTTTCAAGTGGAAACTGGAA---------ATGATGAGGCGATAAATGGGAATAGCATGGGA-AGTG
s cb4.chrX              21377725 157 - 21540570 TCACCTACTCAACAAATCAACCCTGAGCAGTTTTCAACTGTTATGTTTGGAAGCAATCAAGTCCCAACTAATGAATGG---ATCGGTCGAAACACGCTTGCACCAA---------------ACTCCGAAGATAGAAATCGTGACAGAGATATTACCCAAActggttttgaa-aata
i cb4.chrX              I 130 C 0
s caeRem4.Crem_Contig24   723721 166 -  1162296 CTCCCTACACAGGGGTTCAATTCTGAGCAGTTCGCAACAACTGCTATACGAAATAACCAAGTGCCAACTGGGGATTGG---ATGAGTCAGAACACAAGAGCACCAAGTATT------atagaatctggaaataatgataataatcGAGCAATTATTGATAATGGATTTGGA-AATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7309 145 -    67506 CTTCCAGCTCAAGAAAACATTGCGGAACAGTTTGGAACAAGTCTACTACAAAGCAATCAA------------GAATGG---GTTACTAGAAATACAATGGCTCATGGCAAT------ATAGAAAGTAGAAACAGT----TTGGCTGAACAA-----GATGATGGGTTTGGACAAT-
i caeSp111.Scaffold548  C 0 I 7
e caePb3.Scfld02_62       218170 418 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=46707.000000
s ce10.chrX              1007172 246 + 17718866 TTCCAGGAATGGGAAATAGTTTTAATAATTTTGGTATGG-----------------TTTTTCCCCAACAACTACCAATTGCTCAA------TATTT----------------TTTTCAGATACATTAAACACTGGTCAAAGTTCTAAAAAACGCTCTTTCTCTATGATTTTCATTACTGCCGTTATATTAATTGTATTGGTATTCCTTGCACTGTTAGGGTTCTGTTTAATGTTTTTACGGCGGAAGCTTGCAAGCAGAAATCGGCGGTTGTTGGTAGACCGAGT
s cb4.chrX              21377882 248 - 21540570 cacCAGAAACAAACTCCAATCAAAACGGTTTTGAT---------------------TTATTCCT---------ACCCCTGCTTAATTATCTTTTTCAAGGAATGTTTC----ATTTCAGG---ACTCACAGccaatgaaaaaattaaaaaacggTCATTCTCTACAATTTTCATCGCCGCTGTTGTCTTGATcgtgtttttatttttggcttTATTAGCTTTCTCCCTAATATGTCTTCGTAGAAAATTGGCAAATCGAAATCAAAGTCTTTTGATGGATAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   723887 245 -  1162296 CGGCAGGGATGAGTGATAATTTGAATAACTTTGGTAg-------------------ctatt-----------------ttctcaa-aattcatttcaacAAGTATatctaatttttcagg---acTAACATCAAGTGAAAACACAAAGAAGCGATCTTTCTCGATGATTTTCATCATTGCAGTTATTCTGATAGTTATTGTGTTCTTGGCCTTACTAGGGTTGTGTCTGATGTGTCTCCGACGGAAACTTGCTATTAGGAATAGAAGACTGTTAGTGGACAGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7461 237 -    67506 -------TTCAAATAATAACTTGAACAACTTTGGTAAACACAGACTctctaa----atattt--------------ttgattcaa------actGTAC--------------CTTTTAGG---CCAGACTGCTaatgaaaacacaaaaaagaggtcattttcaatgattttcatAGCTGCTATGATTTTCATCGTTTTGGCATTTCTGGCACTATTAGGTTTTTGTCTAATGTTCTTACGAAAGAAGTTAGCAATTCGAAATAGACGACTACTTGTAGATAGAGT
i caeSp111.Scaffold548  I 7 I 45
s caePb3.Scfld02_62       218588 244 +   783054 -------ttcagaaaatgagc--agttattttgaaagatgaaaatatTGTAGCACTATATTCCC---------Acatctattcat------ttttcca--------------atttcagg---tTTGAACTCGAATGAAACCACCAAAAAACGTTCTTTCTCTACCATTTTCATTGCTGCCGTCATCCTGATCATACtggtgtttttcattttgatgggTTTCTGCCTGATGTGTctacgaaaaaatttgacatcAAGGAACAGAAGGTTATTGATGGATAGAGT
i caePb3.Scfld02_62     I 418 I 111
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=17182.000000
s ce10.chrX              1007418  60 + 17718866 --------------------------------------------------CTCAGACAGAACATGGCCTGCAAACACTTCAAATGATGAATATGGAACTACTTCGTGAGT
s cb4.chrX              21378130 101 - 21540570 TTCAGGTTGACG-AAAATGACTATTCAGGGtttaaagcaatt-----ttttccagatagaACATGGCGCGCTAATACTTCAAACGACGAATATGGGAGCA---CGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   724132 104 -  1162296 TTCGGGTGAGTATAAAATATTTAGtcaa---ttgaaatatttgttaCTGTTACAGATAGGACATGGC---CTGCGACCTCAAATGATGAATATGGAAGCACTTCGTATGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7743  60 -    67506 --------------------------------------------------TTCAGATAGAACTTGGCCTGCCACTAACTCGGCTGACGAATATGGAAGCACGTCGTAAGT
i caeSp111.Scaffold548  I 45 I 83
s caePb3.Scfld02_62       218943  60 +   783054 --------------------------------------------------TTCAGATAGAACATGGCCTGCTACAAATTCAGGAGACGAATATGGCACCGCATCGTAAGT
i caePb3.Scfld02_62     I 111 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=546.000000
s ce10.chrX              1007478 1 + 17718866 T
s cb4.chrX              21378231 1 - 21540570 T
i cb4.chrX              C 0 I 3310
s caeRem4.Crem_Contig24   724236 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       219003 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e caeSp111.Scaffold548      7803 83 -    67506 I

a score=-2934.000000
s ce10.chrX              1007479 37 + 17718866 ------TTTCATATATGGGATAGATATGGAATGCTTTAGTTTT
s caeRem4.Crem_Contig24   724237 38 -  1162296 TTgacttttgaataattt--t-gataagTAATTTTAGAATG--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       219004 27 +   783054 ------CTTTACAAATTCAAT-CATGATCAATTT---------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21378232 3310 - 21540570 I
e caeSp111.Scaffold548      7803 83 -    67506 I

a score=-52565.000000
s ce10.chrX              1007516 399 + 17718866  
s caeRem4.Crem_Contig24   724275 280 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      7886 407 -    67506  
i caeSp111.Scaffold548  I 83 C 0
s caePb3.Scfld02_62       219031 374 +   783054  
i caePb3.Scfld02_62     C 0 I 55
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21378232 3310 - 21540570 I

a score=-5210.000000
s ce10.chrX              1007915 60 + 17718866 C-TTCCCGGATCTATCAATAG-----TAATCAAATCCGATG----TAAGATTATTTTGTGTGGTGAAACA------------------------------
s caeRem4.Crem_Contig24   724555 60 -  1162296 CTTTTGGTGAGCTTCCAACGG-----TTGTGAAATCTAATG------TGAGTAATTT-----GTGATATAAGCATG------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8293 90 -    67506 --TTAACCGATACTCAGACAAAGACCTCGAAAAATTAACTGGCATTCTGGTTAAT--------CAAAACAGATATGACAATTctcatattcaaaaaaaaa
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       219405 55 +   783054 I
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21378232 3310 - 21540570 I

a score=-444.000000
s ce10.chrX              1007975 7 + 17718866 AAAATTG-
s caeRem4.Crem_Contig24   724615 7 -  1162296 -AAAACTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8383 7 -    67506 caaaaca-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219460 7 +   783054 CAAATTA-
i caePb3.Scfld02_62     I 55 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e cb4.chrX              21378232 3310 - 21540570 I

a score=11044.000000
s ce10.chrX              1007982 127 + 17718866 --TA-------------AAAAAAAGTTTATTG--------------------ATTTTTAGAGCAC---GAATGAAAATGACAAAACATCTGGAAGACGTCGACCAAGTGTAAAAATATCGAAAAAGAAAACGCCTGCTCCGAATGCAAATCTTCCTTTAAAGTAG-
s cb4.chrX              21381542 130 - 21540570 --Ta-------------aaaaaaTCTACATAA--------------------GTTTTCAGAACGCGGTCAACGACAATGGCAAATCAACGAGCAGAACGCATTCAGCTATGAAGATGGCTAAAAAGAACTCGCCGGCCCCACACCCAAACTTGCCATTGAAGTAA-
i cb4.chrX              I 3310 C 0
s caeRem4.Crem_Contig24   724622 115 -  1162296 ------------------TATTGTCAACATTT--------------------TGTTTTAGAGCTC---CAACG---------AAGCACCTGGCAGAAGACGACCGAGTGTGAAGCTATCTAAGAAAAAATCGCCTGCTCCAAATGTTAACTTACCTTTAAAGTAA-
i caeRem4.Crem_Contig24 C 0 I 28
s caeSp111.Scaffold548      8390 157 -    67506 atcattctcttccaatgaaaactttttcgtatttaattttttgctacgttcaattttcagagctA---CAAGAACA------ACGATCAAGAACAAAAACGGCCAAGTGTAAAAGTATCTCGGAAAAAAGCTCCTGTTCCAACTGCTAATTTACCACTGAAGTatg
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219467 117 +   783054 TGCA-------------AAATCGTTTTT------------------------ATTTCTAGAGctc---caacaaaa------aagattccGGTAGGAGACAGCCGAGCATTAAGAAGTTACAAACGAAAACATCAGCTC---ATCCTAACCTTCCCTTAAAGTGAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=-9447.000000
s ce10.chrX              1008109 35 + 17718866 -TTCCCTT--------------TTT----CCCCTTATTTTCCTCACC----GTTCAAA
s cb4.chrX              21381672 51 - 21540570 GTCAAGTTCAGTAAAATAGTGAAATGGAATTTGTCAGCACCACCGATTGAG-------
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold548      8547 34 -    67506 -tatcttt--------ttttgatct----tcttaTAATTTTCCCGCC-----------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219584 33 +   783054 -TTACCATACAAAAAACCATAATAT----TCTGTTAGT--------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I
e caeRem4.Crem_Contig24   724737 28 -  1162296 I

a score=268.000000
s ce10.chrX              1008144 9 + 17718866 ATCAATTTT
s cb4.chrX              21381744 9 - 21540570 tcaaacttG
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig24   724765 9 -  1162296 ACAAACTTT
i caeRem4.Crem_Contig24 I 28 C 0
s caeSp111.Scaffold548      8581 4 -    67506 -----TTTT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219617 4 +   783054 -----TTGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   141482 3057 +   161274 I

a score=92712.000000
s ce10.chrX              1008153 162 + 17718866 CAGATCAAATCTAGAAGAGTTTGTGTCAAAAACTTATGCTCTTGGAGAGTACAATAATTTGGCAAGTCCAGCTTACGCCTACACATCCGAAATTCACGACGAGAGAGAAGTAGACGTGGGGAACGATGTGCGATATG---AGGTAGAGTTTTCCATTTAATTTTG
s cb4.chrX              21381753 160 - 21540570 CAGGTCCAATCTAGAAGAATTTGTTTCGAAAACCTATGCCCTCGGGGAATACAACAATCTTGCAAGCCCTGCTTACGCGTATACGTCTGATGTTCATGACGAGCGAGAAGTGGATGTTGGGACGGAATCGCGATATG---AGGTTTAA--AGACATTTAGCTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   724774 141 -  1162296 CAGGTCAAATCTAGAAGAATTTGTGTCAAAAACGTATGCCCTTGGAGAATACAATAATCTCGCAAGTCCAGCATACGCCTATACATCTGAAATTCACGATGAAAGGGAAGTGGATGTTGGAAGTGAATCAAGATACG---AGGT---------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8585 136 -    67506 CAGATCGAATCTTGAAGAATTTGTGTCGAAAACGTATGCACTTGGAGAATATAACAATTTGGCGAGTCCTGCGTATGCTTACACCACAGAAATACATGAGGAAAGAGAAGTAGATGTAGGCAACGAGTCGAGATAT-----------------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219621 151 +   783054 CAGATCGAATTTGGAAGAATTCGTGTCGAAAACATATGCACTTGGTGAGTACAACAACATGGCTAGTCCGGCATACGCTTACAGTTCTGAAATACACGATGAACGAGAAGTGGATGTGGGTAGAGAATCGAGATATG---AGGT----------ATGCTGTTCC-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   144539 163 +   161274 CAGATCAAATCTGGAAGAATTTGTATCTAAAACCCATGCACTAGGAGAATATAACATTTTGGCCAGCCCATCATACATTTATACGCAAGAATTATGTGAAGAACAAGAAGTTGATGC--AAAAAGAACTAGGCCAAGCAAAGTTAGagatttttcttttgtttcg
i caeJap4.Scaffold17495 I 3057 I 37

a score=-401.000000
s ce10.chrX              1008315 22 + 17718866 GGAAAGGCTAGGTTGAAACTAT
s cb4.chrX              21381913 12 - 21540570 GAAAAG----------AATTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   724915  5 -  1162296 -----------------ACTAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       219772  0 +   783054 C
e caeJap4.Scaffold17495   144702 37 +   161274 I
e caeSp111.Scaffold548      8721  0 -    67506 C

a score=-6328.000000
s ce10.chrX              1008337 114 + 17718866 TGGGAAACTTGAGAAGGAAAACAATTTTCCAGAAATAAGACTGCCTATGAAATTTGAAGGAAAGCTCATCATATTAACAGTAATATATTTCATTGAAAAACTGAACAGCTCCTA
s caeRem4.Crem_Contig24   724920  35 -  1162296 -------------------------------------------------------------TAGTatttcaaatacaaaatat----------------aTTGAACGTCCCT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       219772  22 +   783054 -------------------------------------------------------------GAGTGTATAAAACCATCGATAA-------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   144702  37 +   161274 I
e cb4.chrX              21381925   0 - 21540570 C
e caeSp111.Scaffold548      8721   0 -    67506 C

a score=6956.000000
s ce10.chrX              1008451 48 + 17718866 ACGTATTTTGCTGCATTCCAGAAGCCGTACGAAAAAAGAAGTGCCAGC
s cb4.chrX              21381925 38 - 21540570 ----------ACCTGTTTTAGAAACCATATGAAAAACGAAACAGTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   724955 35 -  1162296 -------------CCTTACAGAGGCCATATGAAAAACGTAACATCAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8721 27 -    67506 ------------------CAAAGACCGtatgaaaaacgag---agaaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219794 38 +   783054 ----------CTGCTTTCCAGAGACCATATGAAAAACGAACTCAAAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   144702 37 +   161274 I

a score=52896.000000
s ce10.chrX              1008499 83 + 17718866 AAACCAAGAGCCCCA-AGAGTCGAGGACGGAGCAGTATCATCATTCCGATCAATCACTGAAATTGTTCATGCCGCGGAGACAGC
s cb4.chrX              21381963 83 - 21540570 AAGCGAAAACCTTCA-GCTGTGGAAGAAGGAGCAGTTTCTTCTTTCCGTTCAATTACTGAAATAGTTCATGCCGCGGAAACCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   724990 83 -  1162296 AAACCAAGGGCACCG-AGACCGGATGAAAGAGCTGTGTCATCGTTCAGATCCATCACGGAAATAGTTCATGCTGCGGAAACAGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8748 83 -    67506 gcTCCGCGAGCACCG-AGAAATGAAGATGGTGCTGTTTCATCGTTCCGATCAATCACTGAAATAGTCCATGCCGCAGAAACAGC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219832 83 +   783054 CATCCAAAGCCGATT-AGGAATGAAGACGGAGCTGTATCATCGTTCCGGTCAATTACTGAAATTGTACATGCAGCGGAAACCGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   144739 84 +   161274 AGGCAAAGAGCTTCACAGCATTGATGATGCAGCGATTTCTTCTTTTCGTTCAACAACTGAAATAGTTCACGCTGCTGAAACTGC
i caeJap4.Scaffold17495 I 37 I 709

a score=-151.000000
s ce10.chrX              1008582 2 + 17718866 AA
s cb4.chrX              21382046 2 - 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   725073 2 -  1162296 TA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8831 2 -    67506 CG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219915 2 +   783054 AA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   144823 709 +   161274 I

a score=3658.000000
s ce10.chrX              1008584 13 + 17718866 CCACATCGCAAGG
s caeRem4.Crem_Contig24   725075 13 -  1162296 CCACATCTAAAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548      8833 13 -    67506 CCACTTCGAAAGA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       219917 13 +   783054 CGGCTTCAAAAGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   144823 709 +   161274 I
e cb4.chrX              21382048  0 - 21540570 C

a score=29.000000
s ce10.chrX              1008597 1 + 17718866 T
s caeRem4.Crem_Contig24   725088 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       219930 1 +   783054 C
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17495   144823 709 +   161274 I
e cb4.chrX              21382048 0 - 21540570 C
e caeSp111.Scaffold548      8846 0 -    67506 C

a score=-1366.000000
s ce10.chrX              1008598 92 + 17718866 GAGGAATGCAGTAACCAGATGAGTTTTTGCACTGACAAAACATAACTTTGCACTGACAAAACATAACTTTGCACTGACAAAACATAACTTTG
s caeRem4.Crem_Contig24   725089 41 -  1162296 -----ACGTAGTAG----------------------AAAATAT-------------CCAAATCTAAAAAAGCAGTGAGA-----------TA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       219931  1 +   783054 I
e caeJap4.Scaffold17495   144823 709 +   161274 I
e cb4.chrX              21382048  0 - 21540570 C
e caeSp111.Scaffold548      8846  0 -    67506 C

a score=803.000000
s ce10.chrX              1008690 23 + 17718866 CACTGACAAAACATAATTTTGCA
s cb4.chrX              21382048 21 - 21540570 CACTTGCTAAAGGTGATTCTA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   725130 23 -  1162296 CAGGAATTATATATAATTTTACA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       219931  1 +   783054 I
e caeJap4.Scaffold17495   144823 709 +   161274 I
e caeSp111.Scaffold548      8846  0 -    67506 C

a score=-1977.000000
s ce10.chrX              1008713 81 + 17718866 CTGCCCATTATAACATGTTAATTAACCTAAACAGCGTGTTATACACGCAACGCAGCTTTTCTTTTTTTTTAACTGTAAGAC
s cb4.chrX              21382069 15 - 21540570 -----------------------AAATCAAacg---------------------------------tttta----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       219931  1 +   783054 I
e caeJap4.Scaffold17495   144823 709 +   161274 I
e caeSp111.Scaffold548      8846  0 -    67506 C
e caeRem4.Crem_Contig24   725153  0 -  1162296 C

a score=-1885.000000
s ce10.chrX              1008794 27 + 17718866 --GTTCAGTTTTTGTGACAAATTGTTCAT
s cb4.chrX              21382084  5 - 21540570 aaatt------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548      8846  6 -    67506 --GTTCAG---------------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       219931  1 +   783054 I
e caeJap4.Scaffold17495   144823 709 +   161274 I
e caeRem4.Crem_Contig24   725153  0 -  1162296 C

a score=0.000000
s ce10.chrX              1008821 16 + 17718866 TGCTCAGTTTTTATTT
e caePb3.Scfld02_62       219931  1 +   783054 I
e caeJap4.Scaffold17495   144823 709 +   161274 I
e cb4.chrX              21382089  0 - 21540570 C
e caeSp111.Scaffold548      8852  0 -    67506 C
e caeRem4.Crem_Contig24   725153  0 -  1162296 C

a score=-5534.000000
s ce10.chrX              1008837 28 + 17718866 ATTTTGGAAACATATTTTGGAAA------------TTTTT
s cb4.chrX              21382089  8 - 21540570 --------------------------------atttgtAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   725153  5 -  1162296 -----------------------------------TCCcc
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       219932 34 +   783054 ATTTGGGAA------TTAGCATAAATTTcagtgttttatt
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17495   144823 709 +   161274 I
e caeSp111.Scaffold548      8852  0 -    67506 C

a score=56098.000000
s ce10.chrX              1008865 118 + 17718866 ATTTACAGATCAAAAAGGA-AACGGTGATTCCAGTGAAATGCAAAACATTTTGATGGATTGTGTTTTATCGATAAGAGGGTTCGGATACCGAAAGCTCACAGAACAAGAAATAAGTTAG
s cb4.chrX              21382097 118 - 21540570 GTATTCAGAAGTGAGAGGT-GTTGAGAATTCAACACGCCTTCAAAACTTGCTTATGGACTCTGTCCTTTCTATCAGAGGGTTTGGTTATCGAAAACTGACAGAACAAGAaatcagtgag
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   725158 118 -  1162296 aatttcagaatcaagaGAC-AATGGTGACTCCAGTGACATGCAGAACATCCTAATGGATTGTGTACTACCAATAAGAGGATTTGGGTACCGAAAACTGACAGAGCAAGAAATAAGTAGG
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold548      8852 103 -    67506 -------GGGGGCAGAGGATACTAGTGAGATGCAGAAC---------ATTCTTATGGATTGTGTGTTGCCCATAAGAGGATTCGGCTATCGAAAACTAACCGAACAAGAAATAAGTaag
i caeSp111.Scaffold548  C 0 I 36
s caePb3.Scfld02_62       219966 115 +   783054 tttttcagaaggaaaagga-aatggtGATTTGAGTGATCTTCAA---ATTCTAATGGATTGTGTGTTGCCAATAAGAGGATTTGGATACCGAAAATTGACTGAGCAAGAAATCAGTAGG
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17495   145532 118 +   161274 attttcagatgaaGCAAGA-ACAACAAACTTCAAAACGGCGGAAAACATTCTAGTAGAATGCGTAAACTCAATACGCGGATATGGTTACAGTAAACTTACAGAACAAGAAATAAGTTTG
i caeJap4.Scaffold17495 I 709 C 0

a score=-9020.000000
s ce10.chrX              1008983 10 + 17718866 T-----TTCAACTC-A
s cb4.chrX              21382216  9 - 21540570 t-----tttggtGT--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   725277 11 -  1162296 TA---ACTAACCAC--
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62       220082 10 +   783054 T-----atcaacaca-
i caePb3.Scfld02_62     I 1 I 248
s caeJap4.Scaffold17495   145650  9 +   161274 -TGAAACTCA------
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold548      8955 36 -    67506 I

a score=-4.000000
s ce10.chrX              1008993 7 + 17718866 AATTCGC
s cb4.chrX              21382225 7 - 21540570 CATGAGT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   725288 7 -  1162296 TAATTGT
i caeRem4.Crem_Contig24 C 0 I 4
s caeJap4.Scaffold17495   145659 5 +   161274 --TTTGC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       220092 248 +   783054 I
e caeSp111.Scaffold548      8955 36 -    67506 I

a score=-4165.000000
s ce10.chrX              1009000 17 + 17718866 AAGACCCAACAAAAAAT------
s cb4.chrX              21382236 10 - 21540570 -----TAAACT--ATAA------
i cb4.chrX              I 4 I 1
s caeRem4.Crem_Contig24   725299 12 -  1162296 -----CAAACCCAACAT------
i caeRem4.Crem_Contig24 I 4 I 3
s caePb3.Scfld02_62       220340 17 +   783054 aaaaaaaaatacaaaat------
i caePb3.Scfld02_62     I 248 C 0
s caeJap4.Scaffold17495   145664 23 +   161274 TAATTTCAATTTcataaacttat
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold548      8955 36 -    67506 I

a score=173256.000000
s ce10.chrX              1009017 300 + 17718866 CCTATTACAGTTCGATGGAAAAACTTGATTCAGCAAGACTCCCACATCCGTGAATT-GCTAGTTTCCTCAAAAAGTTCGGCAGAAATAGAAAACATATTTGAGCACGAGGAATATAAAAATATGTTCACGTCATCTAAATGGCATGAAATCGCACTTTGTGTGCATCGAGCATTGGT-----------AATTAATTATTTTTACGAAAAGTTGATGC-----TAAAACCAATTAAA--------TTTCAGACGAACTCGCTAGACCGATCAAATTCTAGATCTGAGTTGCAGTTATTCGTTGGAAATGTGCATACTGATTGGTAA
s cb4.chrX              21382247 298 - 21540570 -CTATTTCAGTTCGGTGGAAGAATCTAATACAACAAGACTCTCGTATACGCGAGCT-TCTTGCTGACTCGAAAAGTTCggcggaaattgaaaacataTTCGAACACGatgaatataaaaatatgttcACTTCTTCTAAATGGCATGAAATTGCAATCTGTGTTCACCGAGCATTGGT-----------AAGTACTTATT------ATGAGtcatgaa-aaattggaatc--tctAA-----TATTTATAGACGAATTCTCTGGACAGAACCAATTCGAGGTCGGAACTTCAATTATTTGTCGGAAATGTGCAAACCGAATGGTGA
i cb4.chrX              I 1 I 10668
s caeRem4.Crem_Contig24   725314 301 -  1162296 TCTTATTCAGTACGATGGAAAAATCTAATACAACAAGATGGTCGCATTCGTGATCT-ACTGCTCTCTTCTAAAAGTTCagcagaaatagaaaacatatTCGAGCATGAAGAATACAAGAACATGTTCACTTCTTCAAAGTGGCATGAGATTGCAATATGTGTACATCGAGCATTGGT-----------AAGCACAGAGT------TACCGTTTTCag-a---ttaaatt--tttaaaaaacaaccTTCAGACTAACTCCTTAGACCGCACAAATTCACGATCGGAACTCCAGCTATATGTGGGAAATGTGCAAACCGATTGGTGA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold548      8991 297 -    67506 TCTCTTATAGTTCGATGGAAGAACTTAATTCAACAAGATGGAAAGATTCGTGAACT-TTTGATAAATTCTAAAAGTTCAgctgaaatagaaaacttATTCGATCATGAAGAATACAGAAACATGTTTACTTCTTCAAAATGGCACGAAATTGCGTTATGTGTACACAGAGCATTGGT-TAGTTAGTTAAATTGGTTTTC------AACTGTtgacaa-a---tgaa--------aa--------ttctagaCAACGACCTTAGATCGCACCAATTCCCGATCAGAACTGCAGTTGTTTGTTGGGAACGTGCAAACTGATTGGTAA
i caeSp111.Scaffold548  I 36 C 0
s caePb3.Scfld02_62       220357 295 +   783054 --tttttcagtccgaTGGAAAAACCTCATCCAACAAGACGCGCATATCCGAGAACT-ACTAGcgtcttcaaaaagttctgctgaaattgaaaacatatttgaacacgaagaatacaaaaatatgTTCACATCGTCCAAATGGCATGAAATCGCGTTATGTGTACATCGAGCATTGGTATGAgcatttcaatcaa-----------aaaagataatgATA---TGGC-----Tctaa--------tttcagacaaattccTTAGACCGCTCAAATTCAAGATCAGAACTCCAACTATTTGTGGGCAATGTGCCGACCGAGTGGTGA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   145687 292 +   161274 tttttttcagttaggTGGAGGAACCTAATACAACAAAACTCTCA-ATTAGTGAATTCATTGCTTTTATCAAAAAGTTCCGCCGAAATAGAAGGTTTATTTGAGCAAGATGAGTTCAGGAACTTGTTTACAAATTTAAAATGGCGTGAAATTGCTCTATGTGTTCATCGATCATTGgt-----------aacacattttt------tttaatttttca-a---ttatct---cacaa--------tttcagacaaatttccTTGACCAACCAAACTCTCGATCCCAGCTGCAACTGTTTGTCGGCAATGTGAACACTGATTGGTAA
i caeJap4.Scaffold17495 C 0 C 0

a score=-11522.000000
s ce10.chrX              1009317 60 + 17718866 ------CTAAGCAAGTGTTTGAGAACGAAACAA--------TACGGGACTGTAGTATCCATGTTATTTAAATAA
s caeRem4.Crem_Contig24   725615 57 -  1162296 --------AAATTTGGTGGAGAGGAACAAACAC--------AACGGGTTC-TTGCATCATTACTAATTTAATAA
i caeRem4.Crem_Contig24 C 0 I 9112
s caeSp111.Scaffold548      9288 56 -    67506 ---------AACGCcgaagaaaataggaaacaA--------AACGGGAGT-CAGTCTGCTTTCCAATTTaattt
i caeSp111.Scaffold548  C 0 I 5
s caePb3.Scfld02_62       220652 45 +   783054 ---------ATAACGAAATCAAGT--GAAAACG--------AAcggg----------ttttttgagtttccatg
i caePb3.Scfld02_62     C 0 I 5
s caeJap4.Scaffold17495   145979 69 +   161274 TAAATCTGTAATCTTTGAATGAGTGGAAAAAAGCttttatttatggacct-----attcatttgaattaaaatg
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21382545 10668 - 21540570 I

a score=20.000000
s ce10.chrX              1009377 31 + 17718866 TATACTTGTGTGCAGTTAAATAAATCAATAA
s caeSp111.Scaffold548      9349 31 -    67506 taaatttttgaaatgttaaaaaataaaacaa
i caeSp111.Scaffold548  I 5 I 7661
s caePb3.Scfld02_62       220702 31 +   783054 TAAGTGTTTAGAACATCTGAACGAATAATAA
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold17495   146048 31 +   161274 aatttttatgtcacatttattcaatgcatta
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21382545 10668 - 21540570 I
e caeRem4.Crem_Contig24   725672 9112 -  1162296 I

a score=671.000000
s ce10.chrX              1009408 14 + 17718866 CAATCAAT--TAATTA
s caePb3.Scfld02_62       220733 15 +   783054 -AATAAGTTATAAACA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   146079 14 +   161274 caacatat--taatta
i caeJap4.Scaffold17495 C 0 I 447
e cb4.chrX              21382545 10668 - 21540570 I
e caeSp111.Scaffold548      9380 7661 -    67506 I
e caeRem4.Crem_Contig24   725672 9112 -  1162296 I

a score=698.000000
s ce10.chrX              1009422 16 + 17718866 TCTCAAAACAAAAACT
s caePb3.Scfld02_62       220748 16 +   783054 TATCAGAACGCAAAtt
i caePb3.Scfld02_62     C 0 I 7668
e caeJap4.Scaffold17495   146093 447 +   161274 I
e cb4.chrX              21382545 10668 - 21540570 I
e caeSp111.Scaffold548      9380 7661 -    67506 I
e caeRem4.Crem_Contig24   725672 9112 -  1162296 I

a score=0.000000
s ce10.chrX              1009438 3435 + 17718866  
e caePb3.Scfld02_62       220764 7668 +   783054 I
e caeJap4.Scaffold17495   146093  447 +   161274 I
e cb4.chrX              21382545 10668 - 21540570 I
e caeSp111.Scaffold548      9380 7661 -    67506 I
e caeRem4.Crem_Contig24   725672 9112 -  1162296 I

a score=2105.000000
s ce10.chrX              1012873 28 + 17718866 ATACAAAATTTGATTTTCGATCACGTTT
s caeRem4.Crem_Contig24   430115 28 +  1162296 acataaaacttgattttcaatcACGTTT
i caeRem4.Crem_Contig24 n 9112 C 0
e caePb3.Scfld02_62       220764 7668 +   783054 I
e caeJap4.Scaffold17495   146093 447 +   161274 I
e cb4.chrX              21382545 10668 - 21540570 I
e caeSp111.Scaffold548      9380 7661 -    67506 I

a score=4512.000000
s ce10.chrX             1012901 31 + 17718866 CAAATTGTACTAGATATA--TAAATGCACAGAA
s cb4.chrX               151683 31 + 21540570 caGAAAGTACTAGACAta--cgaattcaaaaaa
i cb4.chrX              n 10668 C 0
s caeRem4.Crem_Contig24  430143 33 +  1162296 CAAATTGTACTAGATATAATAAAATGCACAGAA
i caeRem4.Crem_Contig24 C 0 I 21
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146093 447 +   161274 I
e caeSp111.Scaffold548     9380 7661 -    67506 I

a score=-769.000000
s ce10.chrX             1012932 38 + 17718866 AGT-----TTAGTTTGAAGGGTTTTGGACAAGATTCAAAAAAT
s cb4.chrX               151714 35 + 21540570 aaaacatataagTGTAAAGAg--------aaaatcggtatgct
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146093 447 +   161274 I
e caeSp111.Scaffold548     9380 7661 -    67506 I
e caeRem4.Crem_Contig24  430176 21 +  1162296 I

a score=12070.000000
s ce10.chrX             1012970 143 + 17718866 -------TTGAAAAAAAAAAGAAAGAAAACATGGAAAGAATGAAGGAAATGGAATCAAATCAGCCGAGTTTTTTGTTT-CTTTGACACAT-GAGAATTACACTTTTG-AAGAAGGGGTAGAGAAATTGAAAAAT-------------AATTGAGTGGAAAAAAGGT
s cb4.chrX               151749 163 + 21540570 attaaaacaggaaaaaacaatttgatgaa-atgaaaattatgaaagaaatAGTGTTGGATCAGCCGaatttttcgcttgttttGACACATGGGGAATTTCACACTCACAATTGATAATGCAGTTTCAGAGAAATTAATGCTTGCTAAATTTTTGT--AAACAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430197 141 +  1162296 -------ttggagaagaaaatagaaagaa-atggaaagtatgaaagaaatggaatcaaatcagccgagttttttgttt-ctttgacACAT-GTGAATTACACTTTTGCAGGGTGGGGTGAAGATTAGGAGGagt-------------attttaaa--aaagaaaaa
i caeRem4.Crem_Contig24 I 21 C 0
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146093 447 +   161274 I
e caeSp111.Scaffold548     9380 7661 -    67506 I

a score=26640.000000
s ce10.chrX             1013113 198 + 17718866 ATAAGGCGATGAATGAAGAATCTACTATAACAACAACATAAATCGAAGAAACAACAATGAAAG---------------AATCAGGAATTTTGGGCGTTT---TGGTGATGCGCTTGATAAAAAAACAATGTTACTGCTGGTGTCACTCCGTTTTGATTTCCGAATCTGTTTGAAACGCTTGTGGCACTCCTTTTTCCGCGTTTCACAGTGAATCTG
s cb4.chrX               151912 177 + 21540570 CCATTACAAT------GTAATCTACTATAACAACAAAATGAATCGAAGGAACAACAATAAAAACAGGACTGGTCc---aataaaaacatttgaactttt---------------------cgaatcAAGAC---------TTTCGCTTCGcttgagtttccgaatttgttTGAATCGTTTATGGCACTCtttttttCGCGTCTCACAGTGTATCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430338 209 +  1162296 ataaggcAG-------ATGATCTACTATAACAACAACGTAAATCGAAGGAACAACAATAGAAATAAGGCTagttcacaaaaaaagaaattagaaagTTTTGGTAATGATGAGCTTGAGGACAAAGCGAGAACATTGTTGGTTTCACTCCTtttaacttttcgaatttgttTGAAACGCTTGTGGCACTCTTTTTTACGGGTTTCACAATGAAtctg
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495  146540 171 +   161274 ATAACACCATAAAAGATAGACATAAAATCAAAATAATGTAACTTGAAGCAATAAAAATGC------------------TATAGCTAATTT------TTT---GGATGATGAAATTG---------CGTAAT---------CTTCATTCCTTTTTGTTCTTCTTATTTGTTGGGAATATGTGCGACATTCTTTCCTCCGAGTCGCGCAATGAATCTG
i caeJap4.Scaffold17495 I 447 I 38
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeSp111.Scaffold548     9380 7661 -    67506 I

a score=575.000000
s ce10.chrX             1013311 3 + 17718866 TAA
s cb4.chrX               152089 3 + 21540570 CAA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  430547 3 +  1162296 taa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146711 38 +   161274 I
e caeSp111.Scaffold548     9380 7661 -    67506 I

a score=273.000000
s ce10.chrX             1013314 3 + 17718866 TTA
s caeRem4.Crem_Contig24  430550 3 +  1162296 tta
i caeRem4.Crem_Contig24 C 0 I 80
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146711 38 +   161274 I
e cb4.chrX               152092 4 + 21540570 I
e caeSp111.Scaffold548     9380 7661 -    67506 I

a score=0.000000
s ce10.chrX             1013317 642 + 17718866  
e caePb3.Scfld02_62      220764 7668 +   783054 I
e caeJap4.Scaffold17495  146711  38 +   161274 I
e cb4.chrX               152092   4 + 21540570 I
e caeSp111.Scaffold548     9380 7661 -    67506 I
e caeRem4.Crem_Contig24  430553  80 +  1162296 I

a score=529.000000
s ce10.chrX             1013959 53 + 17718866 TTTTTCAAACAGTTTCAAGTTTTTGGGATATGGCAATTACCAAATATAATTTG
s caePb3.Scfld02_62      556762 41 -   783054 ttttcgaaactgtttgaatcttttgtgacattcctttt------------ttc
i caePb3.Scfld02_62     n 7668 C 0
e caeJap4.Scaffold17495  146711 38 +   161274 I
e cb4.chrX               152092  4 + 21540570 I
e caeSp111.Scaffold548     9380 7661 -    67506 I
e caeRem4.Crem_Contig24  430553 80 +  1162296 I

a score=-1146.000000
s ce10.chrX             1014012 34 + 17718866 TGATTTCGTATCAAAT--------TTTAGTTCCGTTTACTCC
s cb4.chrX               152096 30 + 21540570 TGGTTACGCATATTTTCCAATACATTTACT------------
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_62      556803 42 -   783054 ttgtttcgcagtgaatctgaaaaatgtattttttttctctca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  146711 38 +   161274 I
e caeSp111.Scaffold548     9380 7661 -    67506 I
e caeRem4.Crem_Contig24  430553 80 +  1162296 I

a score=546.000000
s ce10.chrX             1014046 2 + 17718866 AA
s caePb3.Scfld02_62      556845 2 -   783054 aa
i caePb3.Scfld02_62     C 0 I 10
s caeJap4.Scaffold17495  146749 2 +   161274 aa
i caeJap4.Scaffold17495 I 38 C 0
e cb4.chrX               152126 0 + 21540570 C
e caeSp111.Scaffold548     9380 7661 -    67506 I
e caeRem4.Crem_Contig24  430553 80 +  1162296 I

a score=-2487.000000
s ce10.chrX             1014048 3 + 17718866 -CAA
s cb4.chrX               152126 1 + 21540570 ---G
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    52297 3 +    67506 -caa
i caeSp111.Scaffold548  n 7661 C 0
s caePb3.Scfld02_62      556857 3 -   783054 -TAA
i caePb3.Scfld02_62     I 10 I 3
s caeJap4.Scaffold17495  146751 3 +   161274 cta-
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24  430553 80 +  1162296 I

a score=125166.000000
s ce10.chrX             1014051 136 + 17718866 ACCTGTGCCGCGAAAAAGTCGTGCTGAACTGAAGGAGCGTTGCCCATTGCAACACCTGGAGCTACAATTCCACGAACATCACACGGATGGATGCAGTCACATTCGTGGCGCCAACTGTCAATGTCCATATCTACAA
s cb4.chrX               152127 136 + 21540570 ACTTGTGCTGCaaaaaaaTCGTGTTGAACAGATGGTGCATTTCCCATAGCGATTCCTGGACCTACGATACCTCTCACATCACATGGGTGAATACAGTCACACTCGTGCCTCCAACTGTCAATGTCCATATCTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430633 136 +  1162296 ACCTGAGCAGCAAAGAAATCATGTTGAACTGAGGGTGCAGTTCCCATACCAATGCCTGGTGCTACGATTCCTTTCACATCACACGGATGAATACAGTCACATTCATGACGCCAACTGTCAATAtccatgtctgaaa
i caeRem4.Crem_Contig24 I 80 C 0
s caeSp111.Scaffold548    52300 136 +    67506 acctGCGCAGCAAAAAAGTCATGTTGAACAGATGGTGCGTTTCCCATACCAATACCTGGAGCCACTATTCCTTTTACGTCACAAGGATGAATGCAATCACATTCGTGACGCCAACTGTCTATGTCcatatctgaaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      556863 136 -   783054 ACCTGAGCAGCGAAAAAATCGTGTTGAACAGATGGCGCGTTTCCCATTGTAACACCCGGCGATACTATTCCCTTCACATCACATGGATGAATGCAGTCGCATTCATGACGCCAACTATCGATGTCCATGTCTGGAA
i caePb3.Scfld02_62     I 3 I 399
s caeJap4.Scaffold17495  146754 133 +   161274 acctcTGCTGCaaaaaaaTCGTGTTGAACTGAAGGCGCCTTTCCAA---AGATTCCAGGAGCTACAATTCCCCTCACGTCACACGGATGAATACAATTACACTCATGGCGCCAGCTATCAATGTCCATATCTTAAA
i caeJap4.Scaffold17495 C 0 C 0

a score=54.000000
s ce10.chrX             1014187 1 + 17718866 A
s cb4.chrX               152263 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430769 1 +  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    52436 1 +    67506 a
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17495  146887 1 +   161274 A
i caeJap4.Scaffold17495 C 0 I 885
e caePb3.Scfld02_62      556999 399 -   783054 I

a score=180.000000
s ce10.chrX             1014188 1 + 17718866 T
s cb4.chrX               152264 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430770 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 I 124
s caeSp111.Scaffold548    52437 1 +    67506 t
i caeSp111.Scaffold548  C 0 I 793
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I

a score=459.000000
s ce10.chrX             1014189 34 + 17718866 TTTCATATATTTGTCTCTGTTTTCAAGTTTCATT
s cb4.chrX               152265 32 + 21540570 ATTGATGTACT--TCATggttttttgcttttatt
i cb4.chrX              C 0 I 1
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430771 124 +  1162296 I

a score=0.000000
s ce10.chrX             1014223 552 + 17718866  
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e cb4.chrX               152297   1 + 21540570 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430771 124 +  1162296 I

a score=472.000000
s ce10.chrX             1014775 35 + 17718866 CTCTTGTTG-----GATTC-AAATTCGTCGTCCAAAAAAAA
s cb4.chrX               152298 41 + 21540570 CTCTCGCTGTTTgcgattcgaaaatttcctttcGGCAAGAA
i cb4.chrX              I 1 C 0
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430771 124 +  1162296 I

a score=4970.000000
s ce10.chrX             1014810 98 + 17718866 ----ACGTTGGAAGTGGACCAGAAGTGCGAGTCAAGTACATGCAAAGGCGAGGTTTTTGAGAATTCAGGAAATTGAGTAACAG----CACAAAGGACACACGAAAA--
s cb4.chrX               152339 97 + 21540570 ATGCATTTTTAAGTAGACCAAAACGTGCTTCCCGAGG-----AATAAACGAAAAAGCGGAAAACTCAGGAAATTGAGTAAAGT----CACAAAGTGTAGA--AGAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  430895 99 +  1162296 ----ATATTTGAAGCGCCGAAAACGTGCAACTTAAGGGCAT-AGGAAAGGGGGGTAGGGAGAATTCAGGAAATTGAGTAACATCGCACACAAAGTGCACA--AAAA--
i caeRem4.Crem_Contig24 I 124 I 258
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e caeSp111.Scaffold548    52438 793 +    67506 I

a score=188.000000
s ce10.chrX             1014908 7 + 17718866 TAAGTAG
s cb4.chrX               152436 7 + 21540570 TGAAAAG
i cb4.chrX              C 0 I 85
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430994 258 +  1162296 I

a score=0.000000
s ce10.chrX             1014915 356 + 17718866 ATTGTGACAGATAGAGAATGAAAAACTCGGAGAAAAAAGAAGTAGACAAGCTCTTTGGGGTTTAAATAGAATAGAAGTATGAAATTGAAGATACTTGGTTTTTGATTCGATTTTTTAATAATATATACTACCACTGTTCAGTAAAACTCCAAAAAATTTTAAAATGTGACGCCGCCTGCCTACATGGCGTAATTCGTCTAAAAACTACTTGAACCGAATTTTTTTATTATACGAACTATTGGTTGTGAAAAAATTGTGAACTCAATTAAAAACCATAAATTTCAATAAAACCATTTCCTCCGTTTTCCCCTCACTGAAACTTTAACATTTCCTGTACTTTTGAGATGCTCCCTGAT
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeJap4.Scaffold17495  146888 885 +   161274 I
e cb4.chrX               152443  85 + 21540570 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430994 258 +  1162296 I

a score=182.000000
s ce10.chrX             1015271 2 + 17718866 AA
s caeJap4.Scaffold17495  147773 2 +   161274 AA
i caeJap4.Scaffold17495 I 885 C 0
e caePb3.Scfld02_62      556999 399 -   783054 I
e cb4.chrX               152443 85 + 21540570 I
e caeSp111.Scaffold548    52438 793 +    67506 I
e caeRem4.Crem_Contig24  430994 258 +  1162296 I

a score=-556.000000
s ce10.chrX             1015273 2 + 17718866 -AT
s caeRem4.Crem_Contig24  431252 2 +  1162296 -at
i caeRem4.Crem_Contig24 I 258 C 0
s caeJap4.Scaffold17495  147775 2 +   161274 AA-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62      556999 399 -   783054 I
e cb4.chrX               152443 85 + 21540570 I
e caeSp111.Scaffold548    52438 793 +    67506 I

a score=-867.000000
s ce10.chrX             1015275 4 + 17718866 TTTC-
s cb4.chrX               152528 3 + 21540570 -TTA-
i cb4.chrX              I 85 C 0
s caeRem4.Crem_Contig24  431254 4 +  1162296 GTTA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17495  147777 4 +   161274 -TCAC
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62      556999 399 -   783054 I
e caeSp111.Scaffold548    52438 793 +    67506 I

a score=910.000000
s ce10.chrX             1015279 1 + 17718866 T
s cb4.chrX               152531 1 + 21540570 T
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  431258 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold548    53231 1 +    67506 t
i caeSp111.Scaffold548  I 793 C 0
s caeJap4.Scaffold17495  147781 1 +   161274 T
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62      556999 399 -   783054 I

a score=143671.000000
s ce10.chrX             1015280 177 + 17718866 TACCTCTACACTGAAACGACGGATGACCTGCGTAGTCCCATAATTTTGCAGGTGCGAGATGTGGGCATGCCAATTGAGTATAGTAGCACCAGTTAATACACGGAGGCCGTTGCCAGATTTGAAGCGATTGAACCAACAACCATCTACGATACCATATCTGAAACA---------AATTTTTTTTGT-----
s cb4.chrX               152533 184 + 21540570 CACCTCTGCACTGAAAAGAAGGGTGTCCTGCGTAGTCCCACAATTTTGCAGGGGCCAGATGGGGACATGCTAACTGGGTATAATAGCACCAATTGATACACGACGGGCGTTGCCAAATTTGGAGAGATTGAACTAGTAGCCATCTACGATACCATATCTGAATGGAATAGttatggtgattttt-------
i cb4.chrX              I 1 I 21
s caeRem4.Crem_Contig24  431260 174 +  1162296 -ACCTCTGCACTGAAAAGAAGGATGACCTGCGTAGTCCCATAGCTTGGCGGGAGCCAAATGTGGGCAAGCTAGTTGAGTATAATAGCACCAGTTGATACACGAAGGACGTTGCCAAATTTGAAGTGATTGAACTAACAACCATCGCCGATACCATATCTAAACGA---------GTTGaattta-------
i caeRem4.Crem_Contig24 I 1 I 1
s caeSp111.Scaffold548    53232 174 +    67506 taccTCTACACTGAAAGGACGGATGCCCTGCATAATCCCATAGTTTGGCAGGTGCAAGATGTGGGCAAGCCAACTGAGTGTAGTAACACCAATTAATACAGGAAGGCCTTTGCCATATTTGAAGTGATTGAACTAACAACCATCGACGGTACCATATCTGAA------------GTTTTTTCCTgt-----
i caeSp111.Scaffold548  C 0 I 27
s caePb3.Scfld02_62      557398 172 -   783054 TACCTCTGCATTGAAATGATGGATGGCCTGCATAATCCCAGAGTTTGGCAGGAGCTAAATGTGGGCAGGCAAGTTGTGTATAGTAGCACCAGTTTATACATGATGGTCGCTGCCATATTTGAAGCGATTGCACCAGTAACCATCGACGATaccatatctgaa------------aatgggtATT-------
i caePb3.Scfld02_62     I 399 C 0
s caeJap4.Scaffold17495  147782 177 +   161274 AACCTCTGCATTGAAAAGATGGATGTCCCGCATAATCCCATAATTTTGCTGGTGCAAGATGAGGGCATGCTAACTGCGTATAGTAGCACCAGTTTATGCACGGAGCTCGTAGCCAGATGTTGAGCGACTGAACTAACAGCCACCGTCGATACCAAACCTAGA------------AATGATTGCT--TGTTT
i caeJap4.Scaffold17495 C 0 C 0

a score=-3405.000000
s ce10.chrX             1015457 5 + 17718866 ---ATG--CT
s caeRem4.Crem_Contig24  431435 5 +  1162296 ---ttgac--
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62      557570 3 -   783054 ---ATG----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  147959 5 +   161274 ATAGT-----
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX               152717 21 + 21540570 I
e caeSp111.Scaffold548    53406 27 +    67506 I

a score=91.000000
s ce10.chrX             1015462 1 + 17718866 T
s caeJap4.Scaffold17495  147964 1 +   161274 T
i caeJap4.Scaffold17495 C 0 I 25
e caePb3.Scfld02_62      557573 0 -   783054 C
e cb4.chrX               152717 21 + 21540570 I
e caeSp111.Scaffold548    53406 27 +    67506 I
e caeRem4.Crem_Contig24  431440 0 +  1162296 C

a score=-5582.000000
s ce10.chrX             1015463 481 + 17718866 TCTCAGATCTTTAGCTTTCCAATACAAATAAAGATCAAATGTAACTACCGAATTTTGATCATTTTCAAGTTTTTTTTCATAAAAATTTCATAAAAGTGGGCCTAATAAACTGACAAACTGAGAAAATAAGTTCGATCAAGAAAACGCCAAATTTTTTAAAAAGCTTTACGAAAACGAAAGATGAGTTTTTAAAAGATTTTGAATAGTGATACTTTGaaaaaaaaattaaaatttttatttGATGTGAAATTAGACTAATATCCTTTAAAATTTGGAAATTGCCTTAAAAATACGTACTTTACCGACCCAGTTGAAGTCAGTGCACTTATTAATTTTGTCAGTGCACTTATTAATTTTGTCAGTGCACTTATTAATTTTGTCAGTGCATTGGATTAAAACATTTAAATTCGACTATTTTAACAGGCCCAAAAATGCAATTTAACATGTTTCATTTTTAAAATTTTTGCAA--GTTTCCA--AATTG
s caePb3.Scfld02_62      557573 222 -   783054 -------------------------ACATAGaggc--------------------------------actttttttttttgaaatc--------ggtgg--------------------------------------------------------ttgaaaaacttt--------ggagaATAAGT-----AAATGTTTAGAATa--------------------ttaaaat------------------------------------agttttgaaaatgttttagg--------CTTC-----------TAGATTCCGTTCCTTTTTTA---------------CTATACAATTTGTCCGATGAGTT-TCAGTATCATCGATACTTTGCA-------attcgaattc---------------tcaaaaattgaaag------------attttta----TTTGGCAACAGTTGCCATGAAGTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  147965  25 +   161274 I
e cb4.chrX               152717  21 + 21540570 I
e caeSp111.Scaffold548    53406  27 +    67506 I
e caeRem4.Crem_Contig24  431440   0 +  1162296 C

a score=-862.000000
s ce10.chrX             1015944 29 + 17718866 TTTCAATCATTTT---GTCCAATCGTTCCCTT
s caeRem4.Crem_Contig24  431440 32 +  1162296 ttttaatcatttttccattcaaaaattccatt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      557795  6 -   783054 TCTCAA--------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  147965 25 +   161274 I
e cb4.chrX               152717 21 + 21540570 I
e caeSp111.Scaffold548    53406 27 +    67506 I

a score=346.000000
s ce10.chrX             1015973 7 + 17718866 TTATCAC
s caeRem4.Crem_Contig24  431472 7 +  1162296 ttataat
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold548    53433 6 +    67506 TTATCA-
i caeSp111.Scaffold548  I 27 C 0
e caePb3.Scfld02_62      557801 0 -   783054 C
e caeJap4.Scaffold17495  147965 25 +   161274 I
e cb4.chrX               152717 21 + 21540570 I

a score=-4343.000000
s ce10.chrX             1015980 30 + 17718866 ATTCACTTTTTATTTGAGAGCCCCCC---------ACTA
s cb4.chrX               152738 23 + 21540570 ATTAATTTTGTATCTGA-------TC---------ACTA
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig24  431487 32 +  1162296 gttatcACTGTTTCTGT-------TCCCATTTTTTACTA
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold548    53439 17 +    67506 ----TCACTTTTTCCCA------------------ACTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      557801  4 -   783054 -----------------------------------ACTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  147965 25 +   161274 I

a score=327919.000000
s ce10.chrX             1016010 615 + 17718866  
s cb4.chrX               152761 514 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  431519 541 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    53456 523 +    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      557805 497 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  147990 565 +   161274  
i caeJap4.Scaffold17495 I 25 I 59

a score=4023.000000
s ce10.chrX             1016625 10 + 17718866 ATGCTGAAAA
s cb4.chrX               153275 10 + 21540570 ATGCTGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432060 10 +  1162296 ATGCtgcaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    53979  8 +    67506 ATGCTAAA--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      558302 10 -   783054 AGGCTGaaca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148555 59 +   161274 I

a score=-1780.000000
s ce10.chrX             1016635 1 + 17718866 --A
s caeRem4.Crem_Contig24  432070 1 +  1162296 -a-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      558312 1 -   783054 t--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148555 59 +   161274 I
e cb4.chrX               153285 0 + 21540570 C
e caeSp111.Scaffold548    53987 0 +    67506 C

a score=302.000000
s ce10.chrX             1016636 6 + 17718866 AAATTT
s caePb3.Scfld02_62      558313 6 -   783054 gaactt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148555 59 +   161274 I
e cb4.chrX               153285 0 + 21540570 C
e caeSp111.Scaffold548    53987 0 +    67506 C
e caeRem4.Crem_Contig24  432071 0 +  1162296 C

a score=-2986.000000
s ce10.chrX             1016642 139 + 17718866 GCAAGAGAAAATCAAGGATTTATCACATATTGGGCTGAATAATGCTGTGACTTTTCTGTCAGTGCATTGATAGTTTCTGTCAGTGCATTGATAGTTTCTGTCAGTGCATTGATAGTTTCGGTCAGTGCATTGATAGTTT
s caeSp111.Scaffold548    53987  22 +    67506 --------------------------------------------------------TGCCAATAC----------------------------------------------------TCGA---------TGATAACTT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      558319   0 -   783054 C
e caeJap4.Scaffold17495  148555  59 +   161274 I
e cb4.chrX               153285   0 + 21540570 C
e caeRem4.Crem_Contig24  432071   0 +  1162296 C

a score=0.000000
s ce10.chrX             1016781 37 + 17718866 CGGTCAGTGCATTGATAGTTTCGGTCAGTGCATTGAT
e caePb3.Scfld02_62      558319  0 -   783054 C
e caeJap4.Scaffold17495  148555 59 +   161274 I
e cb4.chrX               153285  0 + 21540570 C
e caeSp111.Scaffold548    54009  0 +    67506 C
e caeRem4.Crem_Contig24  432071  0 +  1162296 C

a score=-499.000000
s ce10.chrX             1016818 50 + 17718866 AGTTTTGGTCAGTGCatttaaatatttttttaaatttGTCTCACTTCTTT
s caeRem4.Crem_Contig24  432071 23 +  1162296 tgttttgttcAATGAAACcaatt---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      558319  0 -   783054 C
e caeJap4.Scaffold17495  148555 59 +   161274 I
e cb4.chrX               153285  0 + 21540570 C
e caeSp111.Scaffold548    54009  0 +    67506 C

a score=-18.000000
s ce10.chrX             1016868 22 + 17718866 ACTGTTATTTTGA---TAGAAAGAG
s cb4.chrX               153285 25 + 21540570 ACTGTTATATAATACATAAAATTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432094  9 +  1162296 ----------------cagaaagaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      558319  0 -   783054 C
e caeJap4.Scaffold17495  148555 59 +   161274 I
e caeSp111.Scaffold548    54009  0 +    67506 C

a score=-4968.000000
s ce10.chrX             1016890 58 + 17718866 TTTTAAAAAATTT--GAAACAATATGCATCTATTTTTCTTAACGGACTTGCCTTTTAAGG
s cb4.chrX               153310 12 + 21540570 ---CGATAAGTTCCA---------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432103 10 +  1162296 ---aaaaaaactt-----------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      558319 13 -   783054 ttttgaaaaatgt-----------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148555 59 +   161274 I
e caeSp111.Scaffold548    54009  0 +    67506 C

a score=8599.000000
s ce10.chrX             1016948 36 + 17718866 TGCCAA--ATTAACATACCTGCGCAAAAAACCCAAAAT
s cb4.chrX               153322 22 + 21540570 ----------------ACCTGTGTAAAAAACCCAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432113 22 +  1162296 ----------------acctgTTTAAAAAACCCAAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54009 36 +    67506 TGCGAA--AATTACTCACCCTCGCATAAAACCCAAAGT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      558332 38 -   783054 tgtcaaacaaaaagttaCCTGCgtgaaaaacccaaaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148555 59 +   161274 I

a score=56060.000000
s ce10.chrX             1016984 78 + 17718866 TTTTACAAGGAGG-------AATTGTGTTGGATAAATGAGATGAAGAAGCGCAATTGAATAAAGTAAATAATTGAATAATAAGAA
s cb4.chrX               153344 84 + 21540570 TTTTGCATAGAGGTGACATCTGTTTTGTAATATAAGAG-GTTGAGGAAGCTTGGTTGAATAACATAAATAGATGTATTATGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432135 78 +  1162296 TTTTACAAGGAGG-------AATTGTGTTAGATAAGTGAGTTGCCGAAGCGCAATTGAATAACataaataattgaataatcagaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54045 78 +    67506 TTTTACAAGGAGG-------AATTGTGTTGGATAAATGAGATGCTGAAGCgcaattgaataaaataaataattgaatgATAAATA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      558370 78 -   783054 ttttacaagGAGG-------AATCGTATTGGATAAATGAGATGCCGAAGCGCAATTGAATAACATAAATAATTGTATAATAAGTa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  148614 78 +   161274 TTTTGCACGGATG-------AGGATTGTTAGATACATGTGAAGACATAGCGCAGTTGAATAAAAGAAACAATTGCAGTTTAGGAA
i caeJap4.Scaffold17495 I 59 I 202

a score=60882.000000
s ce10.chrX             1017062 211 + 17718866 TACCCTGAAAAGTTTCAATATTTAATGATATAATGGTTTTCACAAAATT--------------TCC-ATTAAAACTTTCAAACTCACATCGGTTAAATATCGGCGAAAATTCTTGGCCCAGCACCTTCTTGGAGAACTAGTTTTCTTCGAATCGGATAAAATTTGAGGCGAAGGCACAATATCAAAAGGCTTTAACCATAATCGTTCAGTAATATCATTTTTGAAT
s cb4.chrX               153428 180 + 21540570 TACTCtgtaaa------------aa------actgatttttctcaGACT--------------CAA-ACGAT-------GAACGAACGTGAGTGAAACTTCGATAAAGATCATTGGTCCAGCACCGTTTGGAGtaactaatttttttagaattgaatAAAA------GCGAAGGCACAATGAAAAACAGCCTATACCATATTTTATAGGTAATATCAGATAGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432213 193 +  1162296 tactctgaaaa------------aataaagtataTATTTGTATCAAACA--------------CAATAAAAA-------GAACTCACATCGGTTAAATATCGATGAATACTATTGGTCCAGCATCGTCTTGGAGaactagtttttttcgaatcggATAAAATTTGTGGGGAAGGCACAATGTTGAAAGGCTTCAACCATAATCTTTTGGTAATAGAATTTCGGAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54123 187 +    67506 CACTCTGC-Ag------------aataaa--attgatt------aaaCA--TTGA--------TTA-ATTGT-------CAACGCACATCTGTAAAATAACGATGGATATTGTTGATCCAGCATCTTCTTGGCGAACtagttttcttcgaatcgGATAATATTTGAGGTGAAGGCACAATGTTGAAAGGCTTCAACCATAGTCCATTGGAATATTGATTGGTGAAT
i caeSp111.Scaffold548  C 0 I 37
s caePb3.Scfld02_62      558448 195 -   783054 tactctg--aa------------aataag--a-agatt------agataggctgaaaaaaaatttc-attga-------aaacttacatcataaaaataccgaaaaatatGATTGGTCCAACATCTTCTCGGTGaactagtttttttcgaatcggATAATATTTGAGGGGAAGGCACAATGTTAGAAGGCTTCAACCATAATCTATTGgataaaacattttggaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  148692 202 +   161274 I

a score=-5348.000000
s ce10.chrX             1017273 34 + 17718866 TCAAAGTTTGGCTCGTCAGTTGAACTGCAGCTTT-----
s cb4.chrX               153608 26 + 21540570 AGGAATTTTGAGTAGTCGGAACG--------TTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432406 29 +  1162296 AAAAAGTTAGTGTTTGTGGAATA-----AACCGT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      558643 29 -   783054 atAAAGT--GTTCTCTCTCATCA--------TTTTGTCT
i caePb3.Scfld02_62     C 0 I 14
e caeJap4.Scaffold17495  148692 202 +   161274 I
e caeSp111.Scaffold548    54310 37 +    67506 I

a score=16826.000000
s ce10.chrX             1017307 142 + 17718866 -----------CGTCTTGAATGCTCGCACAAAACGACTGGATAAAATCGGTGTTC---------GG------CGACGAATTTGCTTCTCGCCGGCCG-----AATACTTCTGTAGTGTCTGGACGAGGAGCAGCTGTAGGAGCAGGCG---GATGAGTGGGTGG---AGGCTTTTGATG
s cb4.chrX               153634 159 + 21540570 CCATTTGGTTCTGTAAACTTTTCGCA---AAAGCGATTTGAGATGACTGAAAATGTGCGGAAGCGGTGGTAACAATGGGTTTGCTTCGGGCTGGCCGTAGAAAATATCTTCGGAGTG-----------------TATGCGAAATGGCGAGTGATGAATAGCAGGAATAGGCTTTTGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432435 147 +  1162296 CTGCTTGACATTGTAACGGAGCCGGACACAGAATGATTTGATAAAGTCGATGATGAG-------AGTGG-----AGGGTTTTGCTCCGTGCCGGCcgcaaaatatatttttttgatg-----------------tgaAGGAAGAGGTGAATGAGGAATAGGCGG---AGGCTTTTGGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54347 139 +    67506 -----------CATTGTGAATACGGACACAGAACGATTTgaggaattttaaaatg---------gatttcaatgaaaactttgCTTCGTGCCGGCCGTAggatatatttttttgatg-----------------tgaaaaaagaagcgaatGTTGAGTAGGCgg---tggtttttgaaa
i caeSp111.Scaffold548  I 37 C 0
s caePb3.Scfld02_62      558686 130 -   783054 -----------CATAGTGGATACGGAAAT-GATCGATAT-----ATTCGATAATG---------GAACCAAACGCAGGTTTTGCTTCTCGCCGGgcgtaaaaaatattttttcgatg-----------------tgAAAGAAGAGATGAACGAAGAATTGGC------tttttttGGTG
i caePb3.Scfld02_62     I 14 C 0
e caeJap4.Scaffold17495  148692 202 +   161274 I

a score=129885.000000
s ce10.chrX             1017449 125 + 17718866 ACGACGCTCGTATCGTAGCGCTTCTTTTGTGTAAGGCGTGCGAGGCCGCATCGTGCGCGGAGAATCCACGCATGTCAGGCTAGCCCGCGCACTTCGGAGCACATCTAACTACTTTCTGAAAAAAA
s cb4.chrX               153793 122 + 21540570 ACGTCGCTTGTATTGTAGCGGTTCTTTTGTGTAAGGCGTCCGAGGCCGCATCGTGCGCGGATATTCCACGCATGTCAGGCTAGCCCGCGCACTTCGGAGCACATCTAACTACTTTCTGAAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432582 125 +  1162296 ACGACGCTCGTATCGTAGCGGTTCTTTTGTGTAAGGCGTGCGAGGCCGCATCGTGCGCGGAGATTCCACGCATGTCAGGCTAGCCCGCGCACTTCGGAGCACATCTAActactttctgaaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54486 121 +    67506 atggcgCTTGCATGACAGCGGTTCTTTTGTGTAAGGCGTGCGAGGCCGCATCGTGCGCGGAGATTCCACGCATGTCAGGCTAGCCCGCGCACTTCGGAGCACATCTAActactttctgaaa----
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      558816 125 -   783054 TAGACGCTTGTATTGTAGCGCTTCTTTTGTGTAGGGCGTGCGAGGCCGCATCGTGCGCGGAGATTCCACGCATGTCAGGCTAGCCCGCGCACTTCGGAGCACATCTAACtactttctgaaataaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  148894 125 +   161274 ATGCTGCTTGCTTCGTTGCAAATCTTGTTCTTGAAGCGTATAAGGCCACATCATGCGTGGAGTTTCCACACATGTCAAGCCATCCCGAGCACTCCGGAGCACATTCAACTAGATTATGCAAATAA
i caeJap4.Scaffold17495 I 202 I 186

a score=-25397.000000
s ce10.chrX             1017574 112 + 17718866 AGTTGTAGATTTTTAAATTATTTCGCAAAAATC----TGAAGTTAGCAAGAAGAAAAAAAAG-------------ATTTTCGTCGATTTACAAACA------GAACACAAGAGCTTTGATGCATGGGGGACTTTT
s cb4.chrX               153915  48 + 21540570 --------------------CTGTTTAAAATTA----TTCAACAAAC------ACAAGAAAA-------------AGTTACGGACGTTTAA--------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432707  76 +  1162296 atgggtaGGT----------TTTTGTAAAGATT----CTGAGATAACATTGTGATAAGaaaa-------------agtaactaaaaataaaaatca--aagttat------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54607  50 +    67506 -----------------------------attg----atatgatact---gcaaaaagagag---------------------------aaaaagaggaaatgattACAAgag----------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      558941 120 -   783054 ataca---------------gtttttaACATTGAAACATGGGATActcgatcaaaaaaaaaacgcaattTATATAAGTTTTCGAATATTAAGATGAAGAAGACAGTGCAATATTCAAGATGTGTAACacattgtc
i caePb3.Scfld02_62     C 0 I 61
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=-6647.000000
s ce10.chrX             1017686 57 + 17718866 GGCTCCGGCAAGCGCTCAAACCGGAAATAACTCAGAGGTATTTTGGGGTTAAAGTTT
s cb4.chrX               153963 34 + 21540570 --TTTCGTAAAAATgacat-cagaaaaaaacta------acat--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432783 43 +  1162296 tttttcattatggtcaaatacagaaaaaaagcaaacaacACAT--------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    54657 11 +    67506 ---------------------tgaaaataaat-------------------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      559061 61 -   783054 I
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=-22662.000000
s ce10.chrX             1017743 94 + 17718866 AAAAAAAAACGTAAGTGGTTACCAGACACAAATTGCGCTGCAATTCAAAATTCAAGGCTTA----TAGGTTATTCATAGGCCAGAGCACATAGATTTT
s cb4.chrX               153997 58 + 21540570 ----ACGATGATATACAGATAAAGGTTACGAATTCT-----AGTTCCAAA-CAAAGATACA----T--------------------------GGTTGT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  432826 78 +  1162296 ----AAAAAGACCTAGAAATAACTAATATaagtttcataaaagtttcata--aaagtttca----taaaaCCTT---------GAACAC-TAGATTTT
i caeRem4.Crem_Contig24 C 0 I 72
s caeSp111.Scaffold548    54668 53 +    67506 --gaagaacaaTTATTACACATaattaaat-------agaaaatt--aaa--ggaaacccattttt--------------------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      559122 52 -   783054 --aaaaaaaagctttggaaCAGAAACTAatcttttcgagaaaatc--------gaaactca----c--------------------------------
i caePb3.Scfld02_62     I 61 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=-13455.000000
s ce10.chrX             1017837 84 + 17718866 GTTATTTATATATACTACTGAATATTCTAGAATCTACATCAA-ACAATGCTGCTCGGCCAAATTATTTAAATGTTTTCATAATTT-----------------------
s cb4.chrX               154056 76 + 21540570 ----------------------------AGAATTGCGATGCA-CCAATGGTTTACGCCCTGGACCtttg---gtcgaaaaaattctcgcaggctctcaattttttgct
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold548    54721 44 +    67506 --gtttt--------tttggaagctgTAAGGATATTGAATTC-CAAACGAT------------------------------ATTC-----------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      559174 64 -   783054 --gattcgaaaaaaatgaaaaagtgaaaggaaTATCTATTTCACAAACGCTAAACGCACTGG-------------------ATTT-----------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeRem4.Crem_Contig24  432904 72 +  1162296 I

a score=-11093.000000
s ce10.chrX             1017921 41 + 17718866 TTGAAGTTTTCTACTAGTATAA-----------ACCAATAAATTTGTGGTG-C
s cb4.chrX               154132 37 + 21540570 -tcaaacttttgaaccGGAAAG-----AACTGAACCA--------CGGGTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  432976 45 +  1162296 -ttgaatttttgaaccggaaat-----aacttgaaaaaaagtttttgggtC--
i caeRem4.Crem_Contig24 I 72 C 0
s caeSp111.Scaffold548    54765 36 +    67506 ---------TCTAGGCACAT-------CATGCAGGGAATAAACCTTTGGTCC-
i caeSp111.Scaffold548  C 0 I 94
s caePb3.Scfld02_62      559238 42 -   783054 ---------TTGATGCATACACAAACATACACATGCAAGAGACCTTTGGCC--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=-2671.000000
s ce10.chrX             1017962 10 + 17718866 TATACTATGA---
s cb4.chrX               154169  5 + 21540570 -----TCGGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  433021  5 +  1162296 -----TTTGG---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      559280 10 -   783054 ---CATATGGCGA
i caePb3.Scfld02_62     C 0 I 69
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeSp111.Scaffold548    54801 94 +    67506 I

a score=-4424.000000
s ce10.chrX             1017972 85 + 17718866 TGGCTAGTATCTGGGGTATATTTAATTTTTTTAAAGTTGTTTCACTATGTATAAAAAATGTAGAAAC---------------ATTTTTTTCCTGTACACA
s cb4.chrX               154174 45 + 21540570 -----AtttttttGGG----GCTGC-------CGAGCAGCTTC---------------------------------------ATTTTTTGCCAGGCCTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  433026 92 +  1162296 -----GTTTTCTAGGGCACAGCTGC--TCTTATCCGCAGTCTCGACG-GCAgtgaaaacaaagagaatgATGTGaaagggaaattttttttcaaaaacga
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      559290 69 -   783054 I
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeSp111.Scaffold548    54801 94 +    67506 I

a score=-10134.000000
s ce10.chrX             1018057 83 + 17718866 AAAAAAAATATGGGAACATAACATTCA------TTTTGAA--ATTCTTATATTTTATGAATACTAGTTTCACAGTCTCAGGTCCatatatt
s cb4.chrX               154219 36 + 21540570 --AAAATATGCAa--------------------tatggga-ga------------aaaaaaactat----gctGT----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  433118 57 +  1162296 --ataaaaatcaaatctaTTATGTTCCGATTCCTATAGCATGA------------AGGGAAATTGA----GCAGT----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      559359 49 -   783054 AAAAAGTGTTTGGGTCT----------------TCTGGGA-GATTTCTGCGTTTCGAGGATTCTGG-------------------------
i caePb3.Scfld02_62     I 69 I 3
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeSp111.Scaffold548    54801 94 +    67506 I

a score=-4256.000000
s ce10.chrX             1018140 47 + 17718866 ttttttattaaaaaaaaaCTCAGTATGGCCGAAGACTAAAAATTCAA
s cb4.chrX               154255 20 + 21540570 -----TATGGTCACAAAA-------------------GAAAAGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  433175 34 +  1162296 -------TGGCAACAAAA------ATGGGCGATattggaaaattcga
i caeRem4.Crem_Contig24 C 0 I 133
s caeSp111.Scaffold548    54895 41 +    67506 tttggaatagaaaaaaaa------tttatagaaatcaaataaattat
i caeSp111.Scaffold548  I 94 C 0
s caePb3.Scfld02_62      559411 41 -   783054 TATGAAATgaagcaaaag------agaaaaaaaaagagaatactCAT
i caePb3.Scfld02_62     I 3 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=-18691.000000
s ce10.chrX             1018187 130 + 17718866 AAAGTTTGGAGAAACATTTGAACAGATCTTCAAATTTTTAACCGAAATTTTGGTAATCAGTAAAACTATTTTCAGATTATGGTTTTTT---------------ATTAAAAATTGACAACTAGTTGGTCAATTTGtaaaaaaaata
s cb4.chrX               154275  50 + 21540570 ----------GAATTGTATGAACA----------------------------CAATATTGAAAAACATGG-------------------------CCA-----ACCTGACATTTG---ATC------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    54936  85 +    67506 ----------------------------------------------------gTATCtggcaaaactttttcgagaaGGAACAACCCTCTCCCTCCAACATTTATCAtgcattttcaaatag--------aatGGAATAGAATCG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      559452  76 -   783054 ----------------------------------------------------GAAAATCGAATAGCATTT---GGAGTGTGCAAACCG-------CAA-----ATCATGCATTTG-GGATAGCTATTT-TGATgtgaacaaagaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeRem4.Crem_Contig24  433209 133 +  1162296 I

a score=146326.000000
s ce10.chrX             1018317 542 + 17718866  
s cb4.chrX               154325 415 + 21540570  
i cb4.chrX              C 0 I 575
s caeRem4.Crem_Contig24  433342 501 +  1162296  
i caeRem4.Crem_Contig24 I 133 C 0
s caeSp111.Scaffold548    55021 488 +    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      559528 468 -   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=3371.000000
s ce10.chrX             1018859 61 + 17718866 GGAGGCGACGGGCGGGCTGCGGATGATGAAGGAGGAAGATGgaagaaaaaaaagaagaaaa-
s caeRem4.Crem_Contig24  433843 47 +  1162296 --------GGGGAA------GGAAGATGAAGGAGGAAAATGGAAGgatgaaaataatagaa-
i caeRem4.Crem_Contig24 C 0 I 737
s caeSp111.Scaffold548    55509 55 +    67506 gaagaagatgGGTG------GAAAGACGTAAAAGGCTGGCAGGaga-taaaaataatagaaa
i caeSp111.Scaffold548  C 0 I 671
s caePb3.Scfld02_62      559996 51 -   783054 ----actacgaaag------aaaagatggaaaagagaaactggaag-gaaaaatgatggcAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I
e cb4.chrX               154740 575 + 21540570 I

a score=320.000000
s ce10.chrX             1018920 6 + 17718866 tggtga
s caePb3.Scfld02_62      560047 6 -   783054 TAGCGA
i caePb3.Scfld02_62     C 0 I 711
e caeJap4.Scaffold17495  149019 186 +   161274 I
e cb4.chrX               154740 575 + 21540570 I
e caeSp111.Scaffold548    55564 671 +    67506 I
e caeRem4.Crem_Contig24  433890 737 +  1162296 I

a score=0.000000
s ce10.chrX             1018926 2779 + 17718866  
e caePb3.Scfld02_62      560053  711 -   783054 I
e caeJap4.Scaffold17495  149019  186 +   161274 I
e cb4.chrX               154740  575 + 21540570 I
e caeSp111.Scaffold548    55564  671 +    67506 I
e caeRem4.Crem_Contig24  433890  737 +  1162296 I

a score=720.000000
s ce10.chrX             1021705 61 + 17718866 TGTGAAGTAAGTGAGTTATGCCGTAAAAAAT--AACTGTCAAGCCAGTATTTAAAACGCTGAC
s caeRem4.Crem_Contig24  434627 62 +  1162296 tgaaaaaaaactgaaacatgcGGAAACAAGCCCAGCTGCCAAGCCGTCATGCAAA-TATTAAG
i caeRem4.Crem_Contig24 I 737 C 0
e caePb3.Scfld02_62      560053 711 -   783054 I
e caeJap4.Scaffold17495  149019 186 +   161274 I
e cb4.chrX               154740 575 + 21540570 I
e caeSp111.Scaffold548    55564 671 +    67506 I

a score=1395.000000
s ce10.chrX             1021766 21 + 17718866 GAGCAACACAAAAAAAAACAA
s caeRem4.Crem_Contig24  434689 21 +  1162296 GGCAAATagacaaaaatgcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      560764 21 -   783054 GGACAACATAAAATTaagtag
i caePb3.Scfld02_62     I 711 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I
e cb4.chrX               154740 575 + 21540570 I
e caeSp111.Scaffold548    55564 671 +    67506 I

a score=668.000000
s ce10.chrX             1021787 3 + 17718866 AGA
s cb4.chrX               155315 1 + 21540570 --A
i cb4.chrX              I 575 C 0
s caeRem4.Crem_Contig24  434710 3 +  1162296 aaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      560785 3 -   783054 aaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I
e caeSp111.Scaffold548    55564 671 +    67506 I

a score=7744.000000
s ce10.chrX             1021790 81 + 17718866 AAAATGAAAAAAAAAATGCATTTCG-----------GACTAAATAGAAGGCAA----------------AACGACGCAAGATGGCAAGGCAAAGCgaagaagaagaag
s cb4.chrX               155316 72 + 21540570 ----------------GAAATGTGGTaaaaattccggataaaaaacgggtctatc------------------aagaaaaatgagaag--aaggataaaaagaagaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  434713 85 +  1162296 ----------------aaaatttcggaataa-----gaagaaaaagaaggcaaccacaaaagtgaaggcagggaagaagaagaagtag--aaggagaagaagaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    56235 99 +    67506 --aaaaggaaaaagaaagtattTCGGGATAA-----GAAGAACAAGACGGCAAACGCAAACGCGATggcaaagaagaaaaaaagatga--aaaaagaagaagaagaag
i caeSp111.Scaffold548  I 671 C 0
s caePb3.Scfld02_62      560788 92 -   783054 ----agaaaaatggcaagtattttggaatga-----aaataagaagacgACGATGGCGACCGCG-----AAAcgcaaaagaaagaaaa--aaaaagaagaagaagaag
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149019 186 +   161274 I

a score=76756.000000
s ce10.chrX             1021871  86 + 17718866 aag-----atggag---aaaacgagggatgatgcaa---------aagaagcagca----gtagtagTGACGAGGAGCATCAACTTTGAGCAAGGGTGGAAAGGAGG
s cb4.chrX               155388  83 + 21540570 a-------atggag---aagacgaggaatgatgcaa---------aaggagCAGCA----GTAGTAGTGACGAGGagcatcaactttgagcaagGGTGGGAAGGGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  434798  90 +  1162296 agaagaagatggag---aaaacgagggatgatgcaa---------aagaagCAGCA----GTAGTAGTGACGAGGAGCATCAACTTTGAGCAAGGGTgggaagggg-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    56334  91 +    67506 aagaaaagatggag---aaaaCGAGGGATGATGCAA---------AAGAAGCAGCA----GTAGTAGTGACGAGGAGCATCAACTTCGAGCAAGGCTGAGAAGGGGG
i caeSp111.Scaffold548  C 0 I 218
s caePb3.Scfld02_62      560880  89 -   783054 aag--aagatggag---aaaacGAGGGATGATGCAA---------AAGAAGCAGTA----GTAGTAATGGCGAGGAGCATCAACTTTGAGCAAGGGTGGGAAGGGGG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  149205 102 +   161274 -----AAAATGGAATTTAGTATGAGGAATGAGGCAAGAAATTGGGAAAAAGCTGCAAGGCGACGTATTGACGAGAAACATAAACTTTCGGCAAAGAtgggagagaaa
i caeJap4.Scaffold17495 I 186 C 0

a score=51747.000000
s ce10.chrX             1021957 79 + 17718866 GCTT----------GGGAAGAAGGGGGTAGGCAAGAGAAAGAAGCAGGGGGCCTAACCACTTCAGTAAATATCTTGCCAGTAGCATTAG
s cb4.chrX               155471 65 + 21540570 --------------GGGg--------gtaga-gagaaaaagaagca-ggGGCCTAACCACTTCAGTAAATATCTTGCCAGTAGCATTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  434888 74 +  1162296 --------------ggggggggggcagtaga-aagaaaaagaagcaggGGGCCTAACCACTTCAGTAAATATCTTGCCAGTAGCATTAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    56643 88 +    67506 GCTGAGAacggggggggggggcaatagaaga-agaaagaagaagcaggGGGCCTAACCACTTCAGTAAATATCTTGCCAGTAGCATTAG
i caeSp111.Scaffold548  I 218 C 0
s caePb3.Scfld02_62      560969 55 -   783054 ----------------------------------GAAAAAGAAGCAAGGGGCCTAACCACTTCAGTAAATATCTTGCCAGTAGCATTAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495  149307 72 +   161274 ----------aaaagagaagactAGAGTACG-AAAAGAAAGA------GAGCCTAACTACTTCTGCATATATTTTGCCAGTGGTATTAG
i caeJap4.Scaffold17495 C 0 I 10900

a score=51727.000000
s ce10.chrX             1022036 292 + 17718866 CCCCCCCCCCCCCCCCACCACTGTTACCCTG-AGTCTCCGATGAATTCATACTATTC---GTGG-GGGCCTTCGCATGCCTTC-TTCCCTTCTCCGGACCCTTTTTTCCGTCGTGTCTTCTGTCTTCA----TACGCGCGCGCGCGCA-AC----------------GATGCT---CTCACCAACCGCGACAGACGCAGCGCTTTCGCTTTACAACAACAACTTCTTTTTGGACAAACTCATAGTTGCGAAATGGAACAGAACAGCGCCTGCTCTTCCTCGCGCGCGCATCCCtcttctccttctgcttct------tctgctttttc--------------------
s cb4.chrX               155536 252 + 21540570 C------------CTCCCCCTTGTTACCCTA-AGTCTCCAATAAAAGCCTACTATTC-----TGAGTGCCAACGCA----TTC-TTAGAGCTCC------CTCTATTCT-----AGGTTGTGTATTTA----GACGCGT-----TGCA-AG---TTTTCCACGCGGAGATGCTTCACTCG--GACCGCAGCGGACGCAACGCTTTTGCTGTACAACAACAATTTCTT-TGGGGCAAACTCATAGTTGCCAAATGGAACA-------------------------AGActtttctcgtcttccttc-tttct------cttatttttgtcttt--------------tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  434962 255 +  1162296 ---------------CCCCACTGTTACCCTG-TGTCTCCGATAAATTCATACTATTC-----TG-GTCCCAACGCA----TTC-TTTGCCTCCC------CCTTTTTCC-----GTCTTCTGTCTTCA----TACGCGC--GGGCGCA-AGGCCGCCTCCAC-----GATGCT---CTCG-CAACCGCGACGGACGCAGCGCTTTCGCTTTACAACAACAACTTCTT-TGAGACAAACTCATAGTTGCCAAATGGAACA-------------------------Gcgcttct-tcctcttctccc-gGGCT------CCTCCATCAATCGCC-----GCCCAGAGGCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    56731 251 +    67506 ----------------CTCACTGTTACCCTG-AGTCTCCAATAAAATCATACTATTC---GCTG-GTCCCAACGCA----TTCTTTTCCCTCGC------CTCTTTTCC-----GTCTTCTGTCTTCAATTGCATGCGG---GGCGCGCAG---GCCTCCGC--CGCAATGCT---CTCG-CAACCGCGACGGACGC-------TCGCTTTACAACAACAACTTCTTCTGGGACAAACTCATAGTTGCCGAATGGAACA-------------------------TCGCCAGGCCCTTTTCCTCCC-CATTTTCCCAACCCACTCGTGTCTTT----------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      561024 236 -   783054 C--------------CCTCACTGTTACCCTGTCGTCTCCCTTAACTTCCTACTATTCTCATCTG-TTGGGTGCCCA----TTC-TTTCCCTCGC-----GCCTTTTTCC-----ATCTTCTGTCTTCA----TACTCG-----------AT---GCTTC----------TGCT---CGC--CAACCGCATCGGACGC-GCAC-AGCGCTTTACAACAACAACTTCTTTTGGGACAAACTCATAGTTGCCAAATGGAACA-------------------------TCCTCTTACTTTTATTCT-----ATTT------CCtacttgtttctctttttc-----------
i caePb3.Scfld02_62     C 0 I 239
e caeJap4.Scaffold17495  149379 10900 +   161274 I

a score=-3284.000000
s ce10.chrX             1022328 81 + 17718866 ttcttcttcttGCTTC-----ATCCAACTTTTTCCCGTCATCTCCATCTTTTCTCCCCAGCTTCATCTTCTTCCCTT---------------GTTTAGTT--T
s cb4.chrX               155788 85 + 21540570 ttccttattcttcttttgGCCCATCAATTGCCTC------CCTCGGGCTTG----------CTCAGCTTTCTTCTTTCAGCGAGTTTTCACATTCTTGTT--T
i cb4.chrX              C 0 I 285
s caeRem4.Crem_Contig24  435217 62 +  1162296 TTCCTCTTTCCCCCTT-----CACCaact-----------tttccatcttt----------ttcgcCATCCTTTTTT---------------GTCTGGTTGCT
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold548    56982 48 +    67506 -------CTCCCCTTT------------------------TCGCAAACTTC----------TTCAACATTCCTTCTT-------TCTT----ACTCGGTT---
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      561260 239 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I

a score=4047.000000
s ce10.chrX             1022409 19 + 17718866 TGATAGGGTTTGTT----AATTG
s caeRem4.Crem_Contig24  435283 19 +  1162296 TGATAGGGTTTGTT----AATTG
i caeRem4.Crem_Contig24 I 4 I 332
s caeSp111.Scaffold548    57030 23 +    67506 TGATAGGATTTGTTTGTAAAttg
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      561260 239 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               155873 285 + 21540570 I

a score=464.000000
s ce10.chrX             1022428 35 + 17718866 TT--GACTCTCTTCGTTTGTTGTTCATTTTTTGTTGT
s caeSp111.Scaffold548    57053 36 +    67506 tttagaattttttc-tttaataatgaatttttcttgt
i caeSp111.Scaffold548  C 0 I 283
e caePb3.Scfld02_62      561260 239 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               155873 285 + 21540570 I
e caeRem4.Crem_Contig24  435302 332 +  1162296 I

a score=0.000000
s ce10.chrX             1022463 921 + 17718866  
e caePb3.Scfld02_62      561260 239 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               155873 285 + 21540570 I
e caeSp111.Scaffold548    57089 283 +    67506 I
e caeRem4.Crem_Contig24  435302 332 +  1162296 I

a score=606.000000
s ce10.chrX             1023384 84 + 17718866 AAAACATACAATCATTTATTATTTGAAGCCACTGGAGTTAT-TTACTTTGAAAAACAG---AATTATGGAAGGAAGTGGCGACAGATA
s caeRem4.Crem_Contig24  435634 81 +  1162296 AAAGCATATAATCACTGACAATTTG-------TGTTATTATGTTATCATGAACAATGTTTTAGTTATTTTAGGCCACTGGGTTAGGTG
i caeRem4.Crem_Contig24 I 332 C 0
e caePb3.Scfld02_62      561260 239 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               155873 285 + 21540570 I
e caeSp111.Scaffold548    57089 283 +    67506 I

a score=573.000000
s ce10.chrX             1023468 2 + 17718866 GA
s caeRem4.Crem_Contig24  435715 2 +  1162296 GA
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62      561499 2 -   783054 GA
i caePb3.Scfld02_62     I 239 C 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               155873 285 + 21540570 I
e caeSp111.Scaffold548    57089 283 +    67506 I

a score=661.000000
s ce10.chrX             1023470 4 + 17718866 TGCC
s cb4.chrX               156158 4 + 21540570 TGTC
i cb4.chrX              I 285 C 0
s caeRem4.Crem_Contig24  435718 4 +  1162296 CATT
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62      561501 4 -   783054 CGTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e caeSp111.Scaffold548    57089 283 +    67506 I

a score=100624.000000
s ce10.chrX             1023474 304 + 17718866 TAGAACAAACTTTTGATGCGCTTGAAGCCAGTGAATGCCTCGATCTGAATATTGAAAACTATTTTTCAAAAAACACCATAACAA------ATCTTACCAGGAACAGGATGAAACCAATAATAGA---GAGCGCGATGAGGCCATAGCAGGTCCAGCTCACT--AAAAATAA------------TTATTAAATTTCATAAAAGGT--------------------------------------------CCAATAAACCAACTCGGCTCGGCTTTCTTTTCGATTTTGTAGATCCTCTCGGCTCGCTGTCGCTTCCGGATTTCCGTTGCTTCTTGTCCAACACGACGTCTACGAAGTTCTTGGTCAGCCATT--
s cb4.chrX               156162 317 + 21540570 tagatcaattttttgatgcgCTTGAATCCGCTGAAAGCTTCGATCTGAA-A---ACGCGGGAATGTCTTACAGACCTATTTCTATATTAT-TCTCACCAGAAACAAGATGATTCCGATGAATGA---GAAAACGATGAGTGCCCAGCAAGTCCAGCTCACT--GAAATTA-------------GAATATgtcttcttgaatttt------------------------tttaccAGAAA---------TTTGAGAACTCACTAGGCTCTgttttcttttcgattttgtaGATGCGCTCGGCTCGATGTTTCTTCCGGATTTCCGTTGCTTCTTGTCCAACACGACGTCTGCGAAGCTCTTGGTCCGCCATCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  435722 351 +  1162296 TAGAAAAGTCTTTTGATGCGCTTGAATCCGGAGAACGCCTCGATCTGAA-AT--ACGCTAAAA---CCAGATGAATCATTCCAGCACTACAAATTACCAGGAACAAGATGACCCCGAGGATTGA---GAAGATGATGACTGCATAGCATGTCCAGCTCACT--AAAATTAAG-----------GaatgtggttttttgaacCCTTATCTCAAAGTGCTAGTCGTgctattttctagaaaaagacTTTTTCAAAGCACTCACTTGGTTCCGGTTTCTTCTCGATTTTGTAGATTCTTTCGGCTCTATGTCTCTTCCGGATTTCCGTCGCTTCTTGTCCGACACGACGTCTACGAAGCTCTTGGTCCGCCATTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    57372 307 +    67506 tataaaagttttttgacgCGTTTGAAACCACTGAATGCCTcaatctgaa-ac--aaaaacagttttctgaaGTAAC--TACCAAT-TTAGAACTTACCATGATCAAAATGACTCCGAAAATAGC---AACAAAAATCATTGCATATGAGGACCAGCTCACTGGAAAAT------------ATCGGAtgtaa----aaaaacttt------------------------tttt----aaa-----------ctaaaaattacTTGGCTCGGCtgtcttttcgattttgtaAACTCGTTCAGCTCGATGTCTTTTCCGGATTTCCGTTCCTTCTTGCCCAACACGACGTCTGCGAAGCTCGTGGTCCGCCATT--
i caeSp111.Scaffold548  I 283 C 0
s caePb3.Scfld02_62      561505 309 -   783054 tagaacaactttttgacgCGTTTGAAACCAGTGAAAgcttcaatctgaa-attgaggAATAAATTTCCGG--------TACCAA--CTACAACCAACCAGGAAAAGAATGA---CGAGAATGACTGAGAGGACGATGAGTGCGATGGTCGACCAACTCACTTAAAAATTAACTGCTGGTGGTTCAatttaactttgaaaactt------------------------------------------------tgaaactcaCTTGGctcgctttttttctcaattttgtagATTCGTTCAGCTCGatgtttttttcggatttccgtTCCTTCTTGCCCAACACGACGTCTTCGAAGCTCTTGGTCCGCCATT--
i caePb3.Scfld02_62     C 0 I 15
e caeJap4.Scaffold17495  149379 10900 +   161274 I

a score=-4093.000000
s ce10.chrX             1023778 25 + 17718866 --------TGGCTCAGCTATATGTTGGGAAGAA
s cb4.chrX               156479 28 + 21540570 TAAAT--CAGTCAAAGCGATGAGAAG---AGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  436073 33 +  1162296 GAGATACAAGTATAAAAACAGAGCAAGCTAGag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    57679 24 +    67506 ---------GCTAAACTTTTTAGATGGGAAGAA
i caeSp111.Scaffold548  C 0 I 55
e caePb3.Scfld02_62      561814 15 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I

a score=-480.000000
s ce10.chrX             1023803 18 + 17718866 ATGAAACTAAATGATTAA-
s cb4.chrX               156507 18 + 21540570 GTGAATATATATAGTTGA-
i cb4.chrX              C 0 I 38853
s caeRem4.Crem_Contig24  436106 14 +  1162296 ggaaaaat-----gttgaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      561814 15 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e caeSp111.Scaffold548    57703 55 +    67506 I

a score=541.000000
s ce10.chrX             1023821 8 + 17718866 AATGTGGA
s caeRem4.Crem_Contig24  436120 8 +  1162296 aatgagga
i caeRem4.Crem_Contig24 C 0 I 49
e caePb3.Scfld02_62      561814 15 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57703 55 +    67506 I

a score=0.000000
s ce10.chrX             1023829 70 + 17718866 TTTTAAATTTTACAAAATGTTATATCACAAAAAAATATTTTTAAACATTTTAGCATTTTCTCGTATAATA
e caePb3.Scfld02_62      561814 15 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57703 55 +    67506 I
e caeRem4.Crem_Contig24  436128 49 +  1162296 I

a score=331.000000
s ce10.chrX             1023899 75 + 17718866 TTGCAACTAGAATTCAAAATTTAAACAGAAAGCGGA--AGAGAAGTAGTACTAAAGGCTTACCGAGCTAATCAATGC
s caePb3.Scfld02_62      561829 67 -   783054 TTTCAACTAA----CAcgatttgaatggaaaatggagaagagaaatggaaatggatatGTA--AAGTGGAGCG----
i caePb3.Scfld02_62     I 15 C 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57703 55 +    67506 I
e caeRem4.Crem_Contig24  436128 49 +  1162296 I

a score=400.000000
s ce10.chrX             1023974 19 + 17718866 GAAAAGCGCTGAGCCAAGA
s caeSp111.Scaffold548    57758 19 +    67506 GATAAATGTCGAGCTCTTC
i caeSp111.Scaffold548  I 55 C 0
s caePb3.Scfld02_62      561896 19 -   783054 GGAAAGAGAAAAGCCAGCC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeRem4.Crem_Contig24  436128 49 +  1162296 I

a score=13298.000000
s ce10.chrX             1023993 36 + 17718866 GTTACCTAGGTAACTATGATAACAATAGGTTAGAGA
s caeRem4.Crem_Contig24  436177 36 +  1162296 GTTACCTAGGTAACTGTGATAACAATAGGTTAGAGA
i caeRem4.Crem_Contig24 I 49 n 49
s caeSp111.Scaffold548    57777 36 +    67506 GTTACCAAGGTAACTGTGTTAACAATAGGTTAGAGA
i caeSp111.Scaffold548  C 0 n 0
s caePb3.Scfld02_62      561915 29 -   783054 GTTACCTGGGTAACTGTGTTAACCATAGA-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I

a score=750.000000
s ce10.chrX             1024029 47 + 17718866 AGCTGAGAGATTTCACTTTGTGAAGAGGTTTT--GAGAAAATTGAAATA
s caePb3.Scfld02_62      561944 28 -   783054 ---------------------AAAGAGGTATCaggaggaaattgaaata
i caePb3.Scfld02_62     C 0 n 0
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57813  0 +    67506 I
e caeRem4.Crem_Contig24  436213 49 +  1162296 I

a score=0.000000
s ce10.chrX             1024076 663 + 17718866  
e caePb3.Scfld02_62      561972   0 -   783054 n
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57813   0 +    67506 I
e caeRem4.Crem_Contig24  436213  49 +  1162296 I

a score=768.000000
s ce10.chrX             1024739 339 + 17718866 GAGTTGAAAGTGAC-CGTCAGTTCTTTTGTATCCGGTGAAAGCGTTCTCTTTTCATTGGTATCCGTTTGCTCCGGTGATAGGTGTGCTGCTTCAGATGTGTCGGGCTTGCTGTAAGTTGCAGGTATTATAAAAACCATGTGTTTGGTCCTACATTATTCTTACAATAATTATATAAGTAGTGCTGTTATGCTGTTATATCTAACCAGCAAAATTAAGAGCCTCTTTTTTTCGCGGGTCTTGATGAAAGTCGGCTTTCTTCGTTTTGCCAGATAAAACGTTAATA--TCAGACTATTAAA----CACATTGTTTTTAATACATATAATAACCAATCAACTAACCTTA
s caeRem4.Crem_Contig24  734784 284 -  1162296 GAATTGAATGTGACACGTC-GTTTCTCTGTCTCTGGTGAcccatctcttttctcatcagTTGCTGCTGAATCCGGTGAAAGTGGTGTCGCTTCCACTGGTTCAGgcacactg------------------aaaaatgtttttttgagtcaa-------------------ataTAA-------TGTTAT-CTATTTT--CTAACTACTCACCTTA-----CTATGACTTCAACAGGTTTGGGTGGTGG-CGGGGTCGGTGGTCCTGTCCAGTGAGAGATAATTGGTTCAGAGCTTTGgaaatccatatttttctt--------caataagCTCTTTCCCGGAGCTG
i caeRem4.Crem_Contig24 I 9112 C 0
e caePb3.Scfld02_62      561972   0 -   783054 I
e caeJap4.Scaffold17495  149379 10900 +   161274 I
e cb4.chrX               156525 38853 + 21540570 I
e caeSp111.Scaffold548    57813   0 +    67506 I

a score=1595.000000
s ce10.chrX              1025078 5 + 17718866 GCGAT
s cb4.chrX              21393213 5 - 21540570 GCAAC
i cb4.chrX              I 10668 C 0
s caeRem4.Crem_Contig24   735068 5 -  1162296 GCAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     17041 5 -    67506 GCAAT
i caeSp111.Scaffold548  I 7661 C 0
e caePb3.Scfld02_62       561972 0 -   783054 I
e caeJap4.Scaffold17495   149379 10900 +   161274 I

a score=103561.000000
s ce10.chrX              1025083 286 + 17718866 GGTTTTATGAATCCAATCGACTCGAGAATTGCTTCGGCAGCTGCTCTTTTTGATATTATTTTACTTGGACCTCTCCCTTCCAGAGTTTTGTTTTCAAATGTTGCTTGGATAACAAATTCTCTGTGCTTGCCCACGGCTTGTTCTTTGACAAACTCGAAAGTCGGATACTTCTTATAAAATTTTTGTGCATATTCATTTAATTGAGCCACTGGGTTTA---------------GGACATCAATCTCCTCATCT----------TTTTTCATTGTGGCCT-----------------GATTCTTTTCGGTTTTGCGCACATTGGCAGCAA
s cb4.chrX              21393218 328 - 21540570 GGTTTCACAAATCCTATCAAGTCCAACATCTCCTCCGCCGCAGCCCGTTTAGCCAATCGCTTGTTCGGTCCTTTACCTTCACAAACAATCTCACCATACTTTGCCTGTATGACAAACTCTTTATACTTGCTGACTCCATTCTCAGACAAAAGTTCAAATGTAGGGTGGTGACGGCTTTTGGCTTGTGTCACTTGAATCAATCTAGACACTGGGTTGATTTGATGCCCGTAATGCGGAtccattttcttgtctttcacGATTGTTTTCCGTTTTGGTTCACGATGAATAGAGGCAAGTTTCTTCTGAGTCCTACACACGTTAGTAGCAA
i cb4.chrX              C 0 T 3122
s caeRem4.Crem_Contig24   735073 276 -  1162296 GGTTTGACATATCCAATAGTCTCCAACATAGCCTCTGCAGCCGCTCGTTTTGCCAACCGTTTGTTTGGTCCTCTTCCTTCTCTCATTTCGTCACCGCATTTCACTCGGATCACGAATTCTTTGTACTTACTCGCCCCGTGCTCGGCCACCAACTCAAATGTCGGATGCTCTTGGTTCTTGGATTGAATGACTTGGATCAGACGGGACACTGGGTTGATCTGATGTCCATAAAGTGGATCCATTTTCTTGTCCTTGACAATCGTTTTTCGTTTTGGC----------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     17046 328 -    67506 GGTTTTACAATTCCTATTGTTTCAAGCATCGCTTCGGCTGCTGCTCGTTTTGCCAGTCGTTTATTCGGTCCTTTACCTTCACGTGTTTCATCACCATACTTAACACGAATCACAAACTCTTTGTACTTGCTTACTCCGTGTTCTGCTACTAATTCAAACGTCGGATGCTCTTTTGTTTTAGCTTGTGTTACTTGAATCAAACGGGAAACTGGATTGATTTGATGACCATAGAGAGGGTCCATCTTCTTATCTTTCacaattgtttttcgtttgGGTTCACGGGCCAATGCCGCTAATTTTTTCTGCGTTTTGCATACAGTGTTAGCTA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228432 285 +   783054 GGTTTTACAAAACCAATTGTTTCCAGCATTGCTTCAGCAGCCGCTCTTTTTGCTAGTCGTTTGTTGGGTCCCTTACCCTCACGGGTTTCATCTCCATATTGAACACGGATCACAAACTCTTTGTATTTGCTTACACCATGCTCACCTACCAACTCAAACGTTGGATGTTCACGACTTTTTGCCTGTGTTACTTGGATCAATCGGGAAACTGGGTTGATTTGATGGCCGTATAGTGGATCCATTTTCTTATCTTTCACAATCGTTTTCCGTTTTGGCTC-------------------------------------------TTTGTTA
i caePb3.Scfld02_62     I 7668 C 0
e caeJap4.Scaffold17495   149379 10900 +   161274 I

a score=-10399.000000
s ce10.chrX              1025369 65 + 17718866 GGGCTGAAAAATATAAATTTATAACTGGGCAACAGAAACTATTCACAAAAATTCTGTTTCAATAA
s caeRem4.Crem_Contig24   735349 12 -  1162296 ------------------TCTCGGTTCAAT-----------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     17374 62 -    67506 --GCAAGACTGGATTGTTTTCCGGTTCTGC-ATAATACCTATGAACAAGAGTTGTATTCTTATGG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228717  1 +   783054 --A--------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   149379 10900 +   161274 I
e cb4.chrX              21393546 3122 - 21540570 T

a score=-12216.000000
s ce10.chrX              1025434 318 + 17718866 AGACTCAACAACTATAAAAACAACAAATTTGCTACAAACCTGTTGAGCCCTCAGTTTCTCGGTTGTACCTATTTTTCTAAAATTTTCTAAACTACCACATTTTTGGCACACGTCATTTTTTAAACTCAACCCCTATGGAGGAGCTTTTTTTCCACAACTTTCGGAAAATTTAGAAAATCCTTTCTTGTTGTGCCGATGTTTTCTTTTTGGAAG--TTTAAATTTAAAAAAAATAGAAAACTGCTTTTCAATTTTAAGTTTCCAGAATTAGCTGAAAATTTGCCTCAAATGAACCAATGTGCTATTAGAAAAACTTAGAAA
s caeRem4.Crem_Contig24   735361 108 -  1162296 ------------------------------GCAGCAA---------------------------------GtttcttttgagttttgcAA------ACATTGGTGGCGAGAGTCA----------------------------------------------CCGAAC----------------------------------TGTTGTCaggag--ct---------gaaaaatcatagtttttattatttcttttagtttttcgattt----------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       228718 105 +   783054 ----------------------------TTGATGCAA---------------------------------GTTTCTTTTGTGTCTTACAA------ACAGTGGTGGCCAGCGTGA----------------------------------------------CAGGAT------------------------------------TTGGTAGAGGTCCT---------GAAAAATAG-----------ACGACttggagtttcaaaaata--ctg----------------------------tAT----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   149379 10900 +   161274 I
e cb4.chrX              21393546 3122 - 21540570 T
e caeSp111.Scaffold548     17436   0 -    67506 C

a score=64497.000000
s ce10.chrX              1025752 238 + 17718866 AACTCACTAAGATGCTCAACCGTAGCCAAAAGCTGTGTGCATGCTTCCTGCTGAGCACTCTTCTTATTTTTGCCCTTGCCCATCGCTTTTGCCTTCACCACATTATCGTCCGCCACCAGAGTATACCTAACAGCATATTGTCTATTATGTTGATCACCTCCCTCCTCCAAAACTTCAAAGTTAATTTTCAGTTTTAGCTGTTGAGCTTTCTCGTGGATGATACTAATCACTGATTTCT
s caeRem4.Crem_Contig24   735469 233 -  1162296 -----actcagttgctctatagtttttatCAACTGTGCGCATGCCTCTTGTTGAGcgatcttcttctttttccctcttCCAATTCCTTCCGCCTTCACAACCTGCGCACTTGTCACGAATGCACACCGCACTACGTATTGACGGTCATGAGGTGGTCCTTCCtccttcaaaacttcaaaaaccacATTGAGTTTCAGCAGATGTGCTCTTTCGTGGATGTCACTAATAACAGACTTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     17436 237 -    67506 AACTCACTAAGCGGCTCCACAGTTTTCAGCAATTTAGTACAAGCTTCTTGCTGCgcatactttttc-tttttccttcccCAATTGCCTCTGCTTTCACAACTTGAGTACTCGTCACAAATGCGCATCGCACTACATACTGGCGGTCATGTGGTGGACCTTCCTCTTTCAACACTTCAAACACCACGTTTAACTTCAATTGATGTGCTCTTTCGTGAATATCACTAATCACTGATTTCT
i caeSp111.Scaffold548  C 0 T 1429
s caePb3.Scfld02_62       228823 238 +   783054 AACATACTAAGATGCTCAACAGTTTTCAACAACTGCGTACATGCTTCTTGTTGCgcaaacttcttcttttttcctttgccGATAGCTTCTGCTTGCACTTCTTTTGTGCTGGTGACAAATGCACATCGGACAACATATTGACGATCATGAGGTGgtccttcttctttcagtATCTCGAAAATTACACTGAGCTTCAATTGGTGTGCTCTTTCATGGATATCACTAATAACTGACTTTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495   149379 10900 +   161274 I
e cb4.chrX              21393546 3122 - 21540570 T

a score=1044.000000
s ce10.chrX              1025990 13 + 17718866 CGTTGAGCAGTGG
s caeRem4.Crem_Contig24   735702 13 -  1162296 GCTTGTAAAGCGG
i caeRem4.Crem_Contig24 C 0 T 1452
s caePb3.Scfld02_62       229061 13 +   783054 GCTTGTGAACTGG
i caePb3.Scfld02_62     C 0 T 1507
e caeJap4.Scaffold17495   149379 10900 +   161274 I
e cb4.chrX              21393546 3122 - 21540570 T
e caeSp111.Scaffold548     17673 1429 -    67506 T

a score=0.000000
s ce10.chrX              1026003 2154 + 17718866  
e caePb3.Scfld02_62       229074 1507 +   783054 T
e caeJap4.Scaffold17495   149379 10900 +   161274 I
e cb4.chrX              21393546 3122 - 21540570 T
e caeSp111.Scaffold548     17673 1429 -    67506 T
e caeRem4.Crem_Contig24   735715 1452 -  1162296 T

a score=5583.000000
s ce10.chrX              1028157 128 + 17718866 CTTGAGCTTAGCAATAGCGTCAAGCGCTGCATTCTCATCAGCTTCAGTGGTGCTGCAACCGGTACCATGTCCAACCTGAAATTGAGACCTCATTTTTTGCAGTTTTCAACGAAATATTGTAGACCGTG
s cb4.chrX              21390424 106 - 21540570 CTTGAGTTTGGTTATTGCATCAAGAGCTGCTCTCTCGTCGGCTTCTTCAGTTGTATCTCCGGTGCCGTGGCCAACCTAAACTTGA------------TGAAG----------AATATGGTTGCAAATA
i cb4.chrX              T 3122 C 0
s caeJap4.Scaffold17495     4382 120 -   161274 cttCAACTTCAAAAGAGCCGCGAAAGCTGCCTCTTCATTTGCTTCATTTACTGTGGAGCCAATTCCATGTCCCACCTGAAATTAT----TCAATatattttgtttcca----aatcGTGTTCACCGTG
i caeJap4.Scaffold17495 n 10900 I 419
e caePb3.Scfld02_62       229074 1507 +   783054 T
e caeSp111.Scaffold548     17673 1429 -    67506 T
e caeRem4.Crem_Contig24   735715 1452 -  1162296 T

a score=-390.000000
s ce10.chrX              1028285 44 + 17718866 TTACATTAA------AATTAAAAAAAAAAACAAATTTCTAATTGTAGGCA
s cb4.chrX              21390530 39 - 21540570 TTTGAGTGAATATTCAAGTGGAGAAAAATacatattatt-----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       229074 1507 +   783054 T
e caeJap4.Scaffold17495     4502 419 -   161274 I
e caeSp111.Scaffold548     17673 1429 -    67506 T
e caeRem4.Crem_Contig24   735715 1452 -  1162296 T

a score=-2310.000000
s ce10.chrX              1028329 39 + 17718866 GGCTTAGGTAAGAAAGCACCCGTTTCAACTCAATTTTCA-------
s cb4.chrX              21390569  6 - 21540570 ---------------------------------ttttta-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   734263 43 -  1162296 GACTTTGGTAAAACTAGTTACACT---ACTTGATTCTTAAAACATC
i caeRem4.Crem_Contig24 T 1452 C 0
e caePb3.Scfld02_62       229074 1507 +   783054 T
e caeJap4.Scaffold17495     4502 419 -   161274 I
e caeSp111.Scaffold548     17673 1429 -    67506 T

a score=1910.000000
s ce10.chrX              1028368 2 + 17718866 AC
s cb4.chrX              21390575 2 - 21540570 ac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   734306 2 -  1162296 AC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16244 2 -    67506 AC
i caeSp111.Scaffold548  T 1429 C 0
s caePb3.Scfld02_62       227567 2 +   783054 AC
i caePb3.Scfld02_62     T 1507 C 0
e caeJap4.Scaffold17495     4502 419 -   161274 I

a score=59804.000000
s ce10.chrX              1028370 129 + 17718866 TCACCAGTGGTGCTTCAAGTCCTATTGACACGATTGTAAAGTGCTGATCAATGCCAACTTGTGGAAAGCTTGTGTATTGTAAGCTGAACTTGAAGAAGTCGGACAGCTGCTCCAGATGGTGATGGGCGG
s cb4.chrX              21390577 129 - 21540570 taACCAAAGGAGTATCCAACCCCAGAGACACTATTGTGAATTCTTGATTCATTTCTGTTTGAGGGAACGCTGTATAATGAACactaaatttgaaacattgcGAAAGTCGATCCAATTGATGGTGAGCAG
i cb4.chrX              C 0 I 370
s caeRem4.Crem_Contig24   734308 129 -  1162296 TTACGAGAGGTGCTTCCAGTCCCAGCGACACTATTGTAAACTCTTGCATTGGTCCAACATGCGGAAAAGCAGTGTAGTGCACACTAAACTTGTATTGTTCAGAGAATCGTTCAAGCTGTTGTTGTGCAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16246 126 -    67506 TGACCAATGGGGTGTCCAAACCCAAAGACACAATTGTGAAC---TGATTCTTTTCAAGTTCTGGAAAGCTAGTGTACTGCACGCTAAACTTGAATAATCCGGAAAGTTGCTCTAGAAGATAATGTGCTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       227569 126 +   783054 TCACCAATGGTGTATCTAATCCTATCGACACAATTGTGAAA---TTGTTCGGTCCAACCGGGGGGAAAGCGGTATACCCCACGCtgaatttgaatgtttccGACAGCTGATCCAATTGATGACGTGCAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     4921 129 -   161274 TTACCATAGGTTCATCCAAGCCAAGTGACACGATTGTGAAATGTTGAGAAGGGCTAGCTTCAGGAAATGTGGTATATTGAACACTAAACTTGAATGCAACAGACAATCCATCAAGTTCTGAATATGCAG
i caeJap4.Scaffold17495 I 419 C 0

a score=-20360.000000
s ce10.chrX              1028499 37 + 17718866 ATGA---------------------------------------------------TGATTCTGTATG--------------TTTT-TTTTGTTTGCCTTTTTT
s caeRem4.Crem_Contig24   734437  3 -  1162296 -TGC---------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16372  3 -    67506 -TGA---------------------------------------------------------------------------------------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       227695 76 +   783054 -TTAGAATTGTTGGGTCTCCATTTTCCGCTGAATGAATTATTTTATTACCGAAAtggattcagaaga--------------tttt------------gTAATC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     5050 49 -   161274 ------------------------------------------------------TTGATTCTGAAGAAAACATTGTTTGTCTTTTATTTAATTTGCCATTGTT
i caeJap4.Scaffold17495 C 0 I 773
e cb4.chrX              21390706 370 - 21540570 I

a score=-6627.000000
s ce10.chrX              1028536  91 + 17718866 AATCAG--GAAGTATTCTTAAATCAAAAATAAAA-------AACTCAAAAC------------------------------AAACTTACGTGAACTTTGAATCGTCGTGTTTTTTGTTTGCAGGTAGGAT
s caeRem4.Crem_Contig24   734440  97 -  1162296 AGTCCgctgaaaagtttc--------agatatAGTTTCTAAGtttcaaataaatga-------------------------aaatttacttTCAACTGGGAGGCCCAAAAGTTTGGAATCCAGGTACAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16375  89 -    67506 AGTCAGCTGtaacatttt---attaaaaacagaa------------ataagtATAGG------------------------AAACTTACAAGGAAATGGGGTATTATTTGATATTGCTTCTAA--ATAAC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       227771 116 +   783054 AGTCAATTTGAACATTAC---TGCCAAAACAAAA------GGTTTCAGAACGACAAGCTCCAAAATGGCTTTTATGAAATCAAACTCACTCGCAAGAGGGGTAGCa---actttcgaattcaa--aaagt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     5099 773 -   161274 I
e cb4.chrX              21390706 370 - 21540570 I

a score=-235.000000
s ce10.chrX              1028627 3 + 17718866 TGA
s caeRem4.Crem_Contig24   734537 3 -  1162296 TGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16464 3 -    67506 TGC
i caeSp111.Scaffold548  C 0 I 2
s caePb3.Scfld02_62       227887 3 +   783054 gtt
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17495     5872 3 -   161274 TGA
i caeJap4.Scaffold17495 I 773 C 0
e cb4.chrX              21390706 370 - 21540570 I

a score=84463.000000
s ce10.chrX              1028630 143 + 17718866 GCTCTTTCGGAAAGTTCCACAATTTGCTCAGCAGTTAAAGCTCTTCGGTTTTCTTTGGACCTCTTGAGCCGGCGGATTTTGCCTTCGACAATTGCATCTTTCTTGAGTGATTGAACAATTGAATTCGGGTAGTCTTGATCGCC
s cb4.chrX              21391076 143 - 21540570 GCTTTGTCCGACAATTCCTGCATTTGATCCGCTGTTAAAACTCGACGGTGTTCCTTTGACCTTTtcagttttcggaattttccttCGACAATCGTGTCCTTTTTGAGAGATTGCACAATTGAGTTAGGATAGTTTTGATCACC
i cb4.chrX              I 370 C 0
s caeRem4.Crem_Contig24   734540 143 -  1162296 GCTTTTTCGCATAGCTCCTGCATTTGTTGCTCGGTCAGTGCACGACGATTTTCCTTGGACCGTTTCATCTTCCTGAACTTTCCTTCCACAATCTCGTCTATCTTGAGAGACTGCACAATGGAATTGGGGTAGTTTTGATCTCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16469 143 -    67506 GTTCGCTCATACAACTCTTTCATCTGTTCTGAAGTCAGTGTGCGACGATTCTCTTTGGAACGCTTCAACTTTCGGAAACTTCCTTCGACGATGGCATCTTTTTTGAGAGACTGAACTATGGAATTTGGGTAATTTTGATcacc
i caeSp111.Scaffold548  I 2 C 0
s caePb3.Scfld02_62       227892 143 +   783054 gcTTTTTCAGATAGCTCCAGTAGCTGTTCCATCGTTAAAGACCGACGATTTTCCTTCGATCGCTTCAATTTCCTAAATTTGCCTTCTACGATAGCGTCTTTTTTGAGTGATTGAATGATGGAAGTCGGGTAGTCCTGATCTCC
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17495     5875 143 -   161274 GAGCGCTTAGAAAGCTCTTGAGTTTGTTCTTCTGTTAACGAGCGTCGATGCTCTTTGGCTCGTTTAAGTCTTCGTATTCTTCCTTCTACAAACACTTCCTTTTTCAGCTCGGTTACTATCGAGTTTGGATAGTTTTCATCTCC
i caeJap4.Scaffold17495 C 0 I 350

a score=-5454.000000
s ce10.chrX              1028773 47 + 17718866 T-G----AAAATGA-------TTAATTTTTGAGATTTGGCTGAGAAGAAAAGTTGTCTA
s cb4.chrX              21391219 46 - 21540570 TAG----AAAATGTAATCATGGTgat---------tgaacgaaaaaaaaaaattatcta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   734683 26 -  1162296 T-G----AAAATGT-------GTAAT----------------ATAAAGAAAGTT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16612 32 -    67506 t-ggaa-aaaataa-------gtgat----------------taaaagaaaattaat--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228035 18 +   783054 T-GCAATAAAATGA-------TCGAT---------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6018 350 -   161274 I

a score=-19943.000000
s ce10.chrX              1028820 192 + 17718866 GAAAACTTGAATTCTGCTGCGGATTTATAAAACCTTAAAAAGGTGACATTTTTCCAGACAAAATTGTTTCTAGTTCAAAGTGCTTTTGTGCTGATCTAAGCTGTCTTGTG----GAGAGTTTTGAAATTTTTTCAAATAAAATAACTAAAAAATAATGACTAGAATTTGCCAAAAATCAAATTTCTAAACAAAACA--
s caeRem4.Crem_Contig24   734709  46 -  1162296 -------AGGGT-----------------------------TGT-----------------------------------------------------------TGTTATt----gcgattttcgaaa----------------------------------------ttcctcAAATT-------------AGCTTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16644  84 -    67506 aaaaatttggat----------------------ttaaacaggt-----------------------------------------------------------cattctaaaaCataaagtttcaaa-------------------------------acaataattttccaTAGCCTGAAACACTTTTAAAACTA--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228053  53 +   783054 ----GTTCGTAT---------------------------------------------------------------------------------------------TTCTA----GTAAAGCTCGG------------------------------------------TTCGACAAATCGAAACTCATGATCAGCTT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6018 350 -   161274 I
e cb4.chrX              21391265   0 - 21540570 C

a score=29773.000000
s ce10.chrX              1029012 83 + 17718866 ------C----------ATACCTGGAGGAGGACAAGCATGTACTTGAGAGTTAAAAGTAACTCTTCGTTTTTCTGTATCCGGTGAAAGTTC---TCTCTTCT
s cb4.chrX              21391265 86 - 21540570 ------c----------aGACCTGGAGGTGGGCATGCATAAACTTCAGAATTGAAAGTGACTCGTCGTTTTTCGGTGTCGGGCGAACCATCAGATTTTTCCT
i cb4.chrX              C 0 I 1780
s caeRem4.Crem_Contig24   734755 81 -  1162296 ------------------TACCTGGTGGTGGGCACGCCTGCACTTGAGAATTGAATGTGACACGTCGTTTCTCTGTCTCTGGTGAcccatc---tcttttct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16728 97 -    67506 CTTCTCTACAACAAAAATTACCTGGCGGAGGACACGCATGAACCTCAGAGTTGAATgtaactcttc-tttttcattgtctGGCGatccctc---tcttttt-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228106 88 +   783054 CTGTTTC----------TCACCTGGGGGAGGACAAGCATGAACTTCAGAGTTGAAAGTGACACGTCTTTTTTCGTTATCTGGTGATGTTCC---TCGATTT-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6018 350 -   161274 I

a score=-28664.000000
s ce10.chrX              1029095 297 + 17718866 CACTGATATCCGTCTGC------TCCGGTGATAGTTGTGCTGCTTCAGACGTGTCG---GGCTCGCTGTAATTTATGGATATTTAACAAAGCTAACGTAATTGTAAACTACATTTATAGTACATCCACTACACCGGTCAAATTGACTAAATAAGACAGTTGCGGACCTAGATTCATGCCGGCTCCCCCTACCCAAGTTTCACTAAACAGAGCTCCATCTATGAACTATTAAAACAATTGCAATTTTCTCATACATATGCACAACAACCAATCAACTGACCTCG---TCGAAACCGAAACTGCCGTTGGC
s caeRem4.Crem_Contig24   734836 150 -  1162296 catcagTTGCTGCTGAA------TCCGGTGAAAGTGGTGTCGCTTCCACTGGTTCA---Ggcacactgaaa----------------------aatgtttttttga-----------------------------gtcaaat-------aTAA--------------------------------------------------------------TGTTATCTATTTTCTAACTACTCAC---CTTACTATGACTTC----AACAGGT--TTGGGTGGTGGCGGGGTC---------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16825 131 -    67506 -----ctatccgATAAG------CTaggtgatttttgatttggttCCACAGGTTCCCTGATTtcactgaaa---------------------------------------------------------------------------------------------------------------------------------------------------taaaaaattgttaaacGGATGT---TTTGCAATAATTTTCTAACCTCGGC--TTAACT----------TC--AATTGGCAATTCTACT---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228194 148 +   783054 -----GTATCCTCCACATCTTTTTTCGGTGATTGTTGAGCCGCATCCACTTTTTTAACTGGTTCACTGAAAATtaggaa-------------caatttttttc----------------------------------------------------------------------------------------------------------------ttttaaaaaac--ttgATCAGTTA---------AATACCTTTTCGGAATCTCT--TTGACTGGC-------TC--AACCGGAGA------T---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6018 350 -   161274 I
e cb4.chrX              21391351 1780 - 21540570 I

a score=7283.000000
s ce10.chrX              1029392 52 + 17718866 GGAGGACCAGTCCAGTGAGAAATTTCTGG------CAGGGAAGGATCACAGTCTATCA
s cb4.chrX              21393131 52 - 21540570 GGTGGACCTGTCCAATGCGTAATTTGTGT------GTGAGAATAGTCGGCATCAGGGT
i cb4.chrX              I 1780 C 0
s caeRem4.Crem_Contig24   734986 52 -  1162296 GGTGGTCCTGTCCAGTGAGAGATAATTGG------TTCAGAGCTTTGgaaatccatat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     16956 55 -    67506 GGAGGACCAGTCCAATGTGAAATAACAGGCATACCGGTTGGATCGGAgcaatcaa---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228342 55 +   783054 GGAGGACCGGTCCAATGAGATATAACTGCCAT---TGTAGAATCATTACAATCCAAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6018 350 -   161274 I

a score=291968.000000
s ce10.chrX              1029444 395 + 17718866 TTTTCTTAAGCAAACTTTTACCGGGTGGTGGTAATGGTTTAACGAATCCTATAGACTCCAACATCGCTTCAGCGGCGGCTCGTTTTGCTAAACGCTTGTTTGGACCTTTGCCTTCTTGAACGTCGTCTCCATACTTGACTTGAATGATGAATTCTTTGTACTTGCTCACACCATGTTCGGCGACCAACTCGAACGTCGGATGTTCCTTGCTTTTTGCCTGAGTCACTTGAATCAATCGTGACACTGGATTGATTTGATGTCCATACAGGGGATCCATCTTCTTGTCTTTGACAATTGTTTTTCGCTTTGGTTCACGGTTCATTGCAGCCAGCTTTTTTTGAGTTTTGCACACGTTGGTGGCAAGGGCGACCGGATTGTTTTCAGGAGCTGGAAAA
s cb4.chrX              21393183 395 - 21540570 TCTTTTTTAATAGACTTTTTCCAGGTGGAGGCAACGGTTTCACAAATCCTATCAAGTCCAACATCTCCTCCGCCGCAGCCCGTTTAGCCAATCGCTTGTTCGGTCCTTTACCTTCACAAACAATCTCACCATACTTTGCCTGTATGACAAACTCTTTATACTTGCTGACTCCATTCTCAGACAAAAGTTCAAATGTAGGGTGGTGACGGCTTTTGGCTTGTGTCACTTGAATCAATCTAGACACTGGGTTGATTTGATGCCCGTAATGCGGAtccattttcttgtctttcacGATTGTTTTCCGTTTTGGTTCACGATGAATAGAGGCAAGTTTCTTCTGAGTCCTACACACGTTAGTAGCAACTGATACTGGGTTTGTTTGTGGAGCTGAAATG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   735038 395 -  1162296 ttttcttcaataagCTCTTTCCCGGAGCTGGCAAAGGTTTGACATATCCAATAGTCTCCAACATAGCCTCTGCAGCCGCTCGTTTTGCCAACCGTTTGTTTGGTCCTCTTCCTTCTCTCATTTCGTCACCGCATTTCACTCGGATCACGAATTCTTTGTACTTACTCGCCCCGTGCTCGGCCACCAACTCAAATGTCGGATGCTCTTGGTTCTTGGATTGAATGACTTGGATCAGACGGGACACTGGGTTGATCTGATGTCCATAAAGTGGATCCATTTTCTTGTCCTTGACAATCGTTTTTCGTTTTGGCTCTCGGTTCAATGCAGCAAGtttcttttgagttttgcAAACATTGGTGGCGAGAGTCACCGAACTGTTGTCaggagctgaaaaa
i caeRem4.Crem_Contig24 C 0 I 32
s caeSp111.Scaffold548     17011 395 -    67506 tttttttcaacaagcTTTTTCCAGGTGGAGGCAATGGTTTTACAATTCCTATTGTTTCAAGCATCGCTTCGGCTGCTGCTCGTTTTGCCAGTCGTTTATTCGGTCCTTTACCTTCACGTGTTTCATCACCATACTTAACACGAATCACAAACTCTTTGTACTTGCTTACTCCGTGTTCTGCTACTAATTCAAACGTCGGATGCTCTTTTGTTTTAGCTTGTGTTACTTGAATCAAACGGGAAACTGGATTGATTTGATGACCATAGAGAGGGTCCATCTTCTTATCTTTCacaattgtttttcgtttgGGTTCACGGGCCAATGCCGCTAATTTTTTCTGCGTTTTGCATACAGTGTTAGCTAGCAAGACTGGATTGTTTTCCGGTTCTGCATAA
i caeSp111.Scaffold548  C 0 I 27
s caePb3.Scfld02_62       228397 395 +   783054 TTTTCTTCAGTAAACTTTTTCCTGGTGGTGGTAGAGGTTTTACAAAACCAATTGTTTCCAGCATTGCTTCAGCAGCCGCTCTTTTTGCTAGTCGTTTGTTGGGTCCCTTACCCTCACGGGTTTCATCTCCATATTGAACACGGATCACAAACTCTTTGTATTTGCTTACACCATGCTCACCTACCAACTCAAACGTTGGATGTTCACGACTTTTTGCCTGTGTTACTTGGATCAATCGGGAAACTGGGTTGATTTGATGGCCGTATAGTGGATCCATTTTCTTATCTTTCACAATCGTTTTCCGTTTTGGCTCTTTGTTAATTGATGCAAGTTTCTTTTGTGTCTTACAAACAGTGGTGGCCAGCGTGACAGGATTTGGTAGAGGTCCTGAAAAA
i caePb3.Scfld02_62     C 0 I 4
s caeJap4.Scaffold17495     6368 395 -   161274 ttttcttcAACAAACTTTTTCCCGGTGATGGCAACGGTTTCACGTATCCAATAGTTTGAAGCATAGCCTCAGCAGCGGCTCGTTTCGCTAACCTCTTGTTCGGACCTTTTCCCTCTTGAACTTCCTTGCCACATTGAACACGAATTATAAACTCTTTATACTTGCTGAGACCATGCTCTGCGACCAACTCAAATGTTGGGTGAATTTCATTCCTTGCTTGAGTGATTTGCATCAAACGAGATACGGGATTAATTTGATGACCATAATCCGGGTTCATCTTTTTATCTTTAACAATGGTTTTCCTTTTAGACTCCCGGTTGACAGCCGTCaactttttttgagttttgcaGGCATGGCTTGCAAGTACAACTGGATTGTCTTCGACagctgaaaaa
i caeJap4.Scaffold17495 I 350 C 0

a score=-229.000000
s ce10.chrX              1029839 2 + 17718866 AA
s cb4.chrX              21393581 2 - 21540570 CA
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_62       228796 2 +   783054 CG
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold17495     6763 2 -   161274 ga
i caeJap4.Scaffold17495 C 0 C 0
e caeSp111.Scaffold548     17406 27 -    67506 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=-112.000000
s ce10.chrX              1029841 11 + 17718866 ATTGAAATTTA
s cb4.chrX              21393583 11 - 21540570 ATTTAAATGTA
i cb4.chrX              C 0 I 16
s caePb3.Scfld02_62       228798  7 +   783054 ACttgga----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6765  0 -   161274 C
e caeSp111.Scaffold548     17406 27 -    67506 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=645.000000
s ce10.chrX              1029852 16 + 17718866 GTTTCAAACTTAATTT
s caePb3.Scfld02_62       228805 16 +   783054 gtttcaaaaatactgt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     6765  0 -   161274 C
e cb4.chrX              21393594 16 - 21540570 I
e caeSp111.Scaffold548     17406 27 -    67506 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=0.000000
s ce10.chrX              1029868 593 + 17718866  
e caePb3.Scfld02_62       228821   0 +   783054 C
e caeJap4.Scaffold17495     6765   0 -   161274 C
e cb4.chrX              21393594  16 - 21540570 I
e caeSp111.Scaffold548     17406  27 -    67506 I
e caeRem4.Crem_Contig24   735433  32 -  1162296 I

a score=382.000000
s ce10.chrX              1030461 30 + 17718866 AAGTAATGTCCAAATA------AAATACAA-AAATGC
s caeJap4.Scaffold17495     6765 37 -   161274 aaagaattcTTAAATACATAATGAATATAATAAATGA
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       228821  0 +   783054 C
e cb4.chrX              21393594 16 - 21540570 I
e caeSp111.Scaffold548     17406 27 -    67506 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=-829.000000
s ce10.chrX              1030491 1 + 17718866 -T
s caeSp111.Scaffold548     17433 1 -    67506 -T
i caeSp111.Scaffold548  I 27 C 0
s caeJap4.Scaffold17495     6802 1 -   161274 A-
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       228821 0 +   783054 C
e cb4.chrX              21393594 16 - 21540570 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=-347.000000
s ce10.chrX              1030492 2 + 17718866 AA
s caeSp111.Scaffold548     17434 2 -    67506 GG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228821 2 +   783054 AT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     6803 2 -   161274 GT
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21393594 16 - 21540570 I
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=910.000000
s ce10.chrX              1030494 1 + 17718866 A
s cb4.chrX              21393610 1 - 21540570 A
i cb4.chrX              I 16 C 0
s caeSp111.Scaffold548     17436 1 -    67506 A
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       228823 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     6805 1 -   161274 A
i caeJap4.Scaffold17495 C 0 C 0
e caeRem4.Crem_Contig24   735433 32 -  1162296 I

a score=215159.000000
s ce10.chrX              1030495 412 + 17718866 ACTCACTAAGATGCTCCACCGTAGCCAAAAGCTGTGTACATGCTTCCTGCTGAGCACTCTTCTTCTTTTTGCCCTTGCCCACCGCTTCCGCCTTCACCACATTACCGCTGGTCACAAAAGCACACCTTACAACATATTGCCTATCGTGTGGAGGGCCTTCTTCTTTCAGAACTTCAAAAACCACGTTTACCTTCAGCTGGTAGGCCTTCTCGTGGATATCACTTATCACAGATTTTTGTTTGTGAACTGGGATATTTTCT-----------------------------TTTCCAAAT-----------------------------------------CCA--------------------TTATCAGAGCCAT---TT---TGGTGCTCGCGGAGCAGTGGACTCAAAACTGCAAGGGCTTTTGCGGCTGCATCCTGTTTTGCTAGTGGATAGGTTTCACCGATTCCAGTTGCAATTGATTTTCCATTGATGTTAACGATGACCTG
s cb4.chrX              21393611 429 - 21540570 GCTTACAAAGGTGTTCCGCGTTCTTAAGAAGTTGTGTGCATGCTTCTTGTTgtgcaacttttttcttttttccttttcctatTGCTTCAGCTTTAACTTCCTTGTTGCTAGAAACGAATGCACATCGCACAACATAGACGCGGTCATGTGGTGGTCCTTCTTCTTTAAGTGTTTCGAATACCACATTTAGTTTTAATAAGTGAGCTTTCTCATGAATGTCGCTTATCACCGACTTTTGTCTGTGAAGTGGAATGTTTTCAGG----------------------------------------------------------------TGTAGTTGACGCCGCAGAGCTTGA--------ATTGTTATTCACG---T---GTAGTTGGTGTTCTCGAAGCGTCGGTCCGAGAATCGCGAGAGCTTTTGCCGC-GCGTCCTGTTTAGCTAATGGAAACGTTTCTGCTACGCCTGTGGCAAGTGGTTTTCCATCAACGTACACAATaacctg
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig24   735465 471 -  1162296 atttactcagttgctctatagtttttatCAACTGTGCGCATGCCTCTTGTTGAGcgatcttcttctttttccctcttCCAATTCCTTCCGCCTTCACAACCTGCGCACTTGTCACGAATGCACACCGCACTACGTATTGACGGTCATGAGGTGGTCCTTCCtccttcaaaacttcaaaaaccacATTGAGTTTCAGCAGATGTGCTCTTTCGTGGATGTCACTAATAACAGACTTCTGCTTGTAAAGCGGAACTCTTTCCTGAAAAGCCAAA-CATATa----------attttgttt-----------ctttattgATAAAACT-TACAGCTGTCGGCTCA----TTGA-------TGTTTTCTTTCGAGGAAT---TTCGCTGTTGTTCCTTCAATCTTGGGCTAAGAGCGATCAGAGCTTTAGCTGCTGCATCCTGCTTTGCTAACGGGTACGTTTCCCCAACTCCAGTGGCAACTGGTTTCCCGTCAATGTGCACCAtaacctg
i caeRem4.Crem_Contig24 I 32 I 4
s caeSp111.Scaffold548     17437 461 -    67506 ACTCACTAAGCGGCTCCACAGTTTTCAGCAATTTAGTACAAGCTTCTTGCTGCgcatactttttc-tttttccttcccCAATTGCCTCTGCTTTCACAACTTGAGTACTCGTCACAAATGCGCATCGCACTACATACTGGCGGTCATGTGGTGGACCTTCCTCTTTCAACACTTCAAACACCACGTTTAACTTCAATTGATGTGCTCTTTCGTGAATATCACTAATCACTGATTTCTGCTTATGAGTTGGTGTGTTTTCCTGAAAGT-------Agatg----------attcaaaat-----------attaattCA--------TTTAACAAA----TCA---CTTGTGCGTCCAAGTTGTCAGTGGAGGCGG---CTTTTTGACGCTCAGAAAGCATAGGACTCAGAACAGACAATGCTTTCACGGCAGCATCTTGTTTGGCCATGGGATAAGTTTCTCCGATACCAGTGGCTATTGATTTTCCATCGATGTTTACGATAACCTg
i caeSp111.Scaffold548  C 0 I 534
s caePb3.Scfld02_62       228824 501 +   783054 ACATACTAAGATGCTCAACAGTTTTCAACAACTGCGTACATGCTTCTTGTTGCgcaaacttcttcttttttcctttgccGATAGCTTCTGCTTGCACTTCTTTTGTGCTGGTGACAAATGCACATCGGACAACATATTGACGATCATGAGGTGgtccttcttctttcagtATCTCGAAAATTACACTGAGCTTCAATTGGTGTGCTCTTTCATGGATATCACTAATAACTGACTTTTGCTTGTGAACTGGTACAACGTCCTGAAAACTCA----ACATGTTGTCTGCTTGTTCAAAATTCGTGcggaaaattgatcaaaaaatcttcttaATGAAATTCTCA---CTTCGGTAgaaatgttttcattgttaacaatattttgttgttgttcgcGCATCAAAGGGGTCAAAACTGCCAGAGCTTTGATAGCGGCGTCTTGTTTGGCACTGAGAAAAGAGTCTCCTAATCCTGTCGCAATAGATTTCCCATCGATGTTGACTATCACCTG
i caePb3.Scfld02_62     C 0 I 32
s caeJap4.Scaffold17495     6806 457 -   161274 ACTCACTGAGGGTctctatatttttcaataactTTGTACATGCTTCTTGTTGCGCTGTCTTCTTCTTTCTACCCTTTCCAGTTGCTTCTGCTAAAACTATGTCCGTGCTGGTCACAAATGCACATCGCACAGCATATACGCGGTCATGCGGTGGTCCTTCTTCTTTTAAAACCTCGAAAACAACGTTTAACTTCAGTTGATAAGCTTTTTCATGAATGTCACTAATAACCGATTTTTGCTTATGAAGAGGAATaatttcctaaaaaaaaaaattaaa------------actcagTGT----------------------------TTCTGAAAACTGTTCA---CTTACTTGTATTGGTTGTTCTCTT-----G---CTGTTTTATGCTCCATAAGCTTTGGACTGAGCACTGTTAATGCTTTCGACGCGGCATCCTGTTTTGCTAACGGATAAGTTTCTCCTAATCCAGTTGCAATTGACTTTCCATTAATATTCACAATTACCTT
i caeJap4.Scaffold17495 C 0 C 0

a score=1820.000000
s ce10.chrX              1030907 2 + 17718866 AA
s cb4.chrX              21394095 2 - 21540570 aa
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig24   735940 2 -  1162296 aa
i caeRem4.Crem_Contig24 I 4 C 0
s caePb3.Scfld02_62       229357 2 +   783054 aa
i caePb3.Scfld02_62     I 32 C 0
s caeJap4.Scaffold17495     7263 2 -   161274 AA
i caeJap4.Scaffold17495 C 0 I 1292
e caeSp111.Scaffold548     17898 534 -    67506 I

a score=-22536.000000
s ce10.chrX              1030909  38 + 17718866 TA--GGAAACAATTTACCAAAA---------------------------------------------------------------------------------------TCTTG--------------------------------------AAAATTTATTCAA
s cb4.chrX              21394097 154 - 21540570 ttt------taattgttcacaataacaattgaaaattatacGGTTCTTTCTGAGCTAGATAATTTGTAAGAATgcttgaaaaataatacaGTCAATATCTTAATGGGCGTTTTAGTATTTTATATCTTTGTTCATACCTTCTCACagtacaaaaaaa-----caa
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24   735942  31 -  1162296 tt---------gttgaacaCAA---------------------------------------------------------------------------------------TTTTAGTGCC---------------------------------AAAAA-----TAA
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_62       229359  52 +   783054 ttgagtgaaaatcTCATCGCAACAATGAC--------------------------------------------------------------------------------tctgagaatt---------------------------------caaaattgttcaa
i caePb3.Scfld02_62     C 0 I 15
s caeJap4.Scaffold17495     8557  34 -   161274 ----TAGGAAAACGTCTCAAAA---------------------------------------------------------------------------------------TATTA--------------------------------------AAAGGGTA--CAA
i caeJap4.Scaffold17495 I 1292 C 0
e caeSp111.Scaffold548     17898 534 -    67506 I

a score=13886.000000
s ce10.chrX              1030947 65 + 17718866 -----ATACCGCTTGCAATTTCGGTCCTTG-CGGCCGCGCTGGATCAATTGGCAGAGTTGGGAAAGGTGGT
s cb4.chrX              21394260 65 - 21540570 -----ttaccgCTTGCAATGTTGGTCCTAG-CGGTCTATTGGGGTCCAGTGGCATTAATGGAAACTGTGGC
i cb4.chrX              I 9 I 4
s caeRem4.Crem_Contig24   735975 64 -  1162296 ------TACCGCTTGCAGTTTTGGACCTTG-TGGTCTCGTTGAATCAATTGGTGCCACCGGGCTTTGTGGG
i caeRem4.Crem_Contig24 I 2 I 4
s caeSp111.Scaffold548     18432 65 -    67506 -----ATACCGATTGCAATTTTGGCCCATG-AGGTCTAGAAGGATCGATCGGGAAAAACGGAACAGGTTGT
i caeSp111.Scaffold548  I 534 I 4
s caePb3.Scfld02_62       229426 56 +   783054 -----gtaccGCTATCAAATGTGGTCCGTGCATGTATGGCAATGGGTGTTGGAAAGGAGGC----------
i caePb3.Scfld02_62     I 15 I 38
s caeJap4.Scaffold17495     8591 70 -   161274 AGTACTCACCGCCTGAAGTTTTGGTCCATA-TGGTCTCAAAGGATCAATCGGGAGAGGAGAAAAAGGGGTT
i caeJap4.Scaffold17495 C 0 C 0

a score=7380.000000
s ce10.chrX              1031012 59 + 17718866 ----GCATAGAGAGCCATTGATTCTAAC-GGCAATAGAATGTGCTCCGGTAACGGGCATCCTGG
s cb4.chrX              21394329 55 - 21540570 ----ACATAGAGTAC-----TCGTGTTCTGGTAGAAGAATGTGTTCAGGAACAATGCACTGAGG
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   736043 55 -  1162296 ----ACATCGATAAC----GTTGTGGGC-GGTATGAGGATGTGTTCGGGGACGAGGTGTTTTGG
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold548     18501 55 -    67506 ----ACAAAGTCAAA----GATGCGGGT-GGGATAAGAATGTGTTGAGGTATCACACATGCTGG
i caeSp111.Scaffold548  I 4 C 0
s caeJap4.Scaffold17495     8661 59 -   161274 CCATACATTGCTACA----GCTGTCGGA-GGTAAAAGAATATGTTCTGGCACTGGACAACCTGG
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       229482 38 +   783054 I

a score=65516.000000
s ce10.chrX              1031071 104 + 17718866 ATCGGGATAAACCGGCGGATTGCAGGAGATGTAGTTAGGCATTTGGTATTGTAAGGTTCGACAGACGTTTTGAAGAACGCGGTGGGGTTTGGTGGTATCTGGAA
s cb4.chrX              21394384 104 - 21540570 GTCCGGAAACACAGGCGGGTTGCAAGAAACATAATTGGGCGATACATAACTTAACGTTCGACATACATTCTGAAGCACACGATGTGGTTTGGACATTTCTGAAA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   736098 104 -  1162296 ATCCGGGTAGACGGGTGGGTTGCAGACAATGTAGTCGGGTGTTGGATAGTGGAGAGTCCGGCAGACATTTTGAAGCACACGATGCGGTTTAGTCAGCTCTAAAA
i caeRem4.Crem_Contig24 C 0 I 391
s caeSp111.Scaffold548     18556 104 -    67506 GTCTGGATACACAGGAGGATTGACGGAGATGTAGGTTGGTGTTGAATATTGTAGAGTTCGGCAGACACCTTGTAGAACCCGGTGTGGCTTTGCGAGGTCTGGAA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       229520 104 +   783054 GTCTGGATACATCGGGGGATTACATGTGATATACGTCGGCGCAGAGTAACGAAGAGCTCGACAAACATTTTGGAGGACGCGATATGGTTTTgcaatctctgaaa
i caePb3.Scfld02_62     I 38 C 0
s caeJap4.Scaffold17495     8720 104 -   161274 ATCAGGATAGACCGGAGGGTTACATGAAATGTAGCGAGGCGCCGGATATTGCAACGTTCGGCACACATTTTGAAGAACTCGGTGTGGTCTAGTCGCATCTAAAG
i caeJap4.Scaffold17495 C 0 C 0

a score=273.000000
s ce10.chrX              1031175 1 + 17718866 A
s caePb3.Scfld02_62       229624 1 +   783054 a
i caePb3.Scfld02_62     C 0 I 91
s caeJap4.Scaffold17495     8824 1 -   161274 A
i caeJap4.Scaffold17495 C 0 C 0
e cb4.chrX              21394488 4 - 21540570 I
e caeSp111.Scaffold548     18660 0 -    67506 C
e caeRem4.Crem_Contig24   736202 391 -  1162296 I

a score=302.000000
s ce10.chrX              1031176 2 + 17718866 TA
s caeSp111.Scaffold548     18660 2 -    67506 TG
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17495     8825 2 -   161274 TA
i caeJap4.Scaffold17495 C 0 I 52
e caePb3.Scfld02_62       229625 91 +   783054 I
e cb4.chrX              21394488 4 - 21540570 I
e caeRem4.Crem_Contig24   736202 391 -  1162296 I

a score=513.000000
s ce10.chrX              1031178 17 + 17718866 TTTGTATTGTCTTTTTT
s caeSp111.Scaffold548     18662 17 -    67506 TTTTTAAAGTCAGTTTT
i caeSp111.Scaffold548  C 0 I 160
e caePb3.Scfld02_62       229625 91 +   783054 I
e caeJap4.Scaffold17495     8827 52 -   161274 I
e cb4.chrX              21394488  4 - 21540570 I
e caeRem4.Crem_Contig24   736202 391 -  1162296 I

a score=0.000000
s ce10.chrX              1031195 2796 + 17718866  
e caePb3.Scfld02_62       229625   91 +   783054 I
e caeJap4.Scaffold17495     8827   52 -   161274 I
e cb4.chrX              21394488    4 - 21540570 I
e caeSp111.Scaffold548     18679  160 -    67506 I
e caeRem4.Crem_Contig24   736202  391 -  1162296 I

a score=410.000000
s ce10.chrX              1033991 8 + 17718866 TTTTTGCC
s caeRem4.Crem_Contig24   736593 8 -  1162296 ttttttct
i caeRem4.Crem_Contig24 I 391 C 0
e caePb3.Scfld02_62       229625 91 +   783054 I
e caeJap4.Scaffold17495     8827 52 -   161274 I
e cb4.chrX              21394488 4 - 21540570 I
e caeSp111.Scaffold548     18679 160 -    67506 I

a score=-1000.000000
s ce10.chrX              1033999 30 + 17718866 -TTGAAGGAATTCCTACAAA-TAACCACAACA
s cb4.chrX              21394492 24 - 21540570 TTGCAA-------AAATGGT-TAGATATAATT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   736601 31 -  1162296 -tacaaGTCATTGAAACAGTATCAATATAACA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       229625 91 +   783054 I
e caeJap4.Scaffold17495     8827 52 -   161274 I
e caeSp111.Scaffold548     18679 160 -    67506 I

a score=-28.000000
s ce10.chrX              1034029  9 + 17718866 -GAACAATTT
s cb4.chrX              21394516 10 - 21540570 GAAATCGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   736632 10 -  1162296 GAGACTAGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       229716  9 +   783054 GAAAAT-ATT
i caePb3.Scfld02_62     I 91 C 0
e caeJap4.Scaffold17495     8827 52 -   161274 I
e caeSp111.Scaffold548     18679 160 -    67506 I

a score=3827.000000
s ce10.chrX              1034038 8 + 17718866 CTCACCGT
s cb4.chrX              21394526 8 - 21540570 CTTACCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   736642 8 -  1162296 CTTACCGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       229725 8 +   783054 ACCACTGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     8879 8 -   161274 CTTacagt
i caeJap4.Scaffold17495 I 52 C 0
e caeSp111.Scaffold548     18679 160 -    67506 I

a score=48509.000000
s ce10.chrX              1034046 117 + 17718866 TTATCCTCTTTTTAGTGGGTTTCTCAGTTGGAAGTGGAAGTTTCGTGCCCTTGAGTGCTGCTTCAGCGGACGCTTGTTGTGCTCTTTTGATTGATGTTCCGCTTCCTGAAC---------AAAT-----TT
s cb4.chrX              21394534 119 - 21540570 TCAATCTGCGTCGAGCATTTCTTTCTGATGGCTGTGGAAGGCTGGTTTTCTCCAATGCAGTTTCTGCAGCTGCTTGTTGAGCTCGTTTGATAGACGTACCACTTCCTGGga-------agaaat-----tc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   736650 124 -  1162296 TGCCCTTTTTCCGAACTGGTTTTTCTGTCGGAAGTGGGAGTTTGGTGCCTTTCAAAGCTGCCTCTGCTGACGCCTGCTGTGCTCGCTTGATGGATGGTCCACTTCCTGGAA-------ATAAGTTGTAATA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     18839 116 -    67506 ttgccttttttcttgaatttttctctgcCGGTACAGCAAGTTTAGTATTAAGTAAAGCAATTTCTGCTGCTGCCTGTTGAGCCCTTTTGATAGACGGTCCACTTCCTTAAT----------Aat-----ta
i caeSp111.Scaffold548  I 160 C 0
s caePb3.Scfld02_62       229733 123 +   783054 ---CTTTTCTTCTTGCATTTTTGTCTGACGGAATTGGAAGTTGTGTATGTTTAACAGCTTCTTCCGCCGATGCTTGTTGAGCTCTTTTGATCGATGGGCCACTGCCtgaagtttttcgagaaac-----tt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495     8887 117 -   161274 tatttttctttcGCGCAGGCTTTTCAGGTGGATGCGGCAATTTCGTGCATTGTAATGCTAATTCTGCTGAAGATTGTTGTGCTTTTTTGATAGAACTTCCACTACCTGAAA---------CAGT-----TT
i caeJap4.Scaffold17495 C 0 n 0

a score=-12502.000000
s ce10.chrX              1034163 32 + 17718866 TATGA---------AAATTTAGCTTTTT---------------TTCTAGAAAATTT
s cb4.chrX              21394653 30 - 21540570 gatga--------aaaaattggatatc----------TGACGCTTCTC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   736774 47 -  1162296 AATGAGCTCTTCCAAAACTTGAATATTAGGGTTAGAGTAATG-TTCTC--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     18955 34 -    67506 actat----tttttcaattgttctgTAA---------------TGCACTAAA---T
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       229856 29 +   783054 agtaa----tttttcaagtttgctTTTA---------------TCCCC--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17495     9004  0 -   161274 I

a score=72757.000000
s ce10.chrX              1034195 125 + 17718866 TACCCTCAAATGTCTCAGCTTCAGTCAAAACTAGCTTCACCGTGAACAATTTCTTGTGAGCCGGCCCACTTTCGTCTTGCAAATTGTAAACGTGCCGCAGCTTGTTGAATCGAGCTATCTGG----------------AAT---
s cb4.chrX              21394683 128 - 21540570 -ACCTTCGAACGTTTCCTCGTTGTTCAATACTAATCTAACAGTGAATAACTTTTTATGAGCAGGTCCACTTTCGTCTTGTAGATCATAGAAGTGACGCAATTTGTTGAATCTTGCGATCTAAA------------TATAAT---
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig24   736821 124 -  1162296 -ACCTTCAAAAGACTCCTCAGGTGTCAAGACTAGTTTGACAGTAAACAACTTCTTGTGAGCAGGACCACTTTCATCTTGCAAGTCGTAGATGTGTCGCAGTTTGTTGAATCGCGCAATCTGA----------------AAT---
i caeRem4.Crem_Contig24 C 0 I 662
s caeSp111.Scaffold548     18989 118 -    67506 TACCCAAAAATGTTTCGTTGTCTGTCAAAATCAGCTTCACAGTAAACAACTTTTTATGTGCTGGTCCGCTTTCGTCTTGTAAATCGTAGTAGTGTCGAAGTTTGTGAAATCTGGCGAT--------------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       229885 117 +   783054 -ACCTTCATATGTTTCATTAGGAGTCAAAACTAATTTAACCGTAAACAGTTTCTTATGTGCTGGTCCACTCTCATCTTGCAAATCGTAGTAGTGCtttattttgttgaaacgAGCGAT--------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   160279 144 +   161274 TACCTTCAAATACTTCTCCCGCTGTTAGGACAAGCTTCACTGTAAATAGCTTTTTGTGTGCAGGCCCGCTCTCGTCTTGAAGATCGTAGAAATGTTTTATCTTATTAAACCGAgcaatctttaaaaaaaagacggTTTAGTGTT
i caeJap4.Scaffold17495 I 10900 C 0

a score=-3596.000000
s ce10.chrX              1034320  38 + 17718866 TTTTATTTTATGAACGCAAA-----------------------------------------------------------------------------------------GTTTGAATCTGGAA---------------------------------------------TTTT-----------
s caeJap4.Scaffold17495   160423 183 +   161274 ATTtattgtaaaaacaaaaaagttgcaacgcggtgtttgcgtacttttgaaaattcaaatggcaatgagagaaatagcataggaaatgaagagaattgttcccattttcgtttgaattttaaaagtacgcaaacaccgcgttgcaacttttctgttttcacaataaatttttaaattaaaaaa
i caeJap4.Scaffold17495 C 0 C 0
e caePb3.Scfld02_62       230002   0 +   783054 C
e cb4.chrX              21394811  27 - 21540570 I
e caeSp111.Scaffold548     19107   0 -    67506 C
e caeRem4.Crem_Contig24   736945 662 -  1162296 I

a score=93027.000000
s ce10.chrX              1034358 135 + 17718866 GTTACCTCTGCCACTCTACACATTGCCGACTTCTCCTTCTCTTTTGCATTTGTGTAGTCATAGAAATTCGTCGGCGAGTCTGCCTCGAATTTGTGTTGACCGCACCAATGTTGGGGATGCAGGCGTTCTGGTTTT
s cb4.chrX              21394838 127 - 21540570 CCTACCTCGGCAACACGACACATCGCcgatttgtttttatttttacttgTCGTgtaatcataaaaatttgtcGGAGAGTCCGCTTCAAATTTGTGCTGGCCACACCAGTGTTGTGGATGGACTTTTG--------
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig24   737607 135 -  1162296 GTTACCTCTGCCACACGACACATTGCCGACTTTTGCTTGTTTTTCGCAGTGGTGTAGTCGTAGAAGTTGGTGGGAGAGTCCGCCTCAAACTTGTGCTGTCCACACCAGTGATGGGGATGAACTCGTTCCGGTTTC
i caeRem4.Crem_Contig24 I 662 C 0
s caeSp111.Scaffold548     19107 125 -    67506 -----TTCTGCTACTCTACACATTGCCGACTTTTCTTTGTCTTTGGAACTGGTATAGTCGTAGAAATTTGTTGGGGAATTTGTCTCAAATTTGTGTTGACCACACCAATGATGTGGATGAACTCGTTCAG-----
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       230002 130 +   783054 -----TTCTGCTACTTTGCACATTGCCGATTTCTCTCTAATCTTTGTGGTGGTATAATCATAGACATTTGTGGGAGAATCTGCTTCAAACTTGTGTTGACCACACCAATGATGGGGATGTACTCGTTCCGATTTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17495   160606 135 +   161274 gttaCCTCAGCAATACGGCACATAGCCGATTTCTCTTCATTCCTTGAATTGCAGTAGTTATAAAAGCTAGTCGGCGAATCAATTCCAAACTTGTGCTGACCACACCAATGCTGGGGATGTATTTTTTCTAGTGTT
i caeJap4.Scaffold17495 C 0 N 0

a score=-7891.000000
s ce10.chrX              1034493 14 + 17718866 TGCTCCGACTGAAA-------
s cb4.chrX              21394965  4 - 21540570 ---------TG-------GA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   737742  8 -  1162296 AA------CTG-------GAA
i caeRem4.Crem_Contig24 C 0 I 1914
s caeSp111.Scaffold548     19232  3 -    67506 --------CTG----------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       230132 18 +   783054 TTCTCagtctgtgaaaaa---
i caePb3.Scfld02_62     C 0 C 0

a score=760.000000
s ce10.chrX              1034507 14 + 17718866 TTGATGAGAGTTTT
s cb4.chrX              21394969 14 - 21540570 TAACTGTAAAATTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       230150 14 +   783054 aaaacgaaagattt
i caePb3.Scfld02_62     C 0 I 1031
e caeSp111.Scaffold548     19235  0 -    67506 C
e caeRem4.Crem_Contig24   737750 1914 -  1162296 I

a score=-7218.000000
s ce10.chrX              1034521 189 + 17718866 TTCCAGCAG-TGCTTCAGAATTAGA-AAATTGCAATTTTTGAAATTATTGAAATTTTACAGCTTTCCAAAAAGTACTGACTTTCCAAAAAAAATGTTTTTTTTGCAAAATATAAATTCTTGTTCAAAAAATATGTGCAACAGCTTAATGTTTCTTTGTAAAATTCGTTGTTTTTTTAAAAACATTTTTGGA
s cb4.chrX              21394983 156 - 21540570 ----------GGATTGATGATAtga-aaattacgatttttaaCA----TGGAAACAT-----TTTCTCGACAGAACTA-----TCAATAGAGATGTCTAGAAATCATAATATAGA--CTTTGACAAAACCCTTGcaccaattttt--tgttgttat------tgcactatttctaaaaaaatacgTTTAAA
i cb4.chrX              C 0 I 380
s caeSp111.Scaffold548     19235 123 -    67506 ---CCGCATtggtctgaaaataagacaAATTACA------AACA-TGTTGGTTTCAT-----GTTTTATACGACACC------TCAGT---------TCCAATTC------------CTCTGACAATCAATTCACGCAAAACATT--GGTTGCCTC------ATCATTTTAGC------------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       230164 1031 +   783054 I
e caeRem4.Crem_Contig24   737750 1914 -  1162296 I

a score=-5378.000000
s ce10.chrX              1034710 341 + 17718866 TGTTTTAAGGGAACCGATATCTCAGtattttataaaattttaaaagaatacaaaaattaaaattaaaaatttCAAAACCAAAACCAAAATTCAAACAAAATTGAACAATTTCGTAAAATTTCAGTACTAAGTGAATATCTTAATAGCTATCAAAATGGCTCACATTTTGTTAAACGACATTGTTAAAAGAAAACTTAAGTAGGACAATTTTTGAATGGCCGGTAGTTTTTTTTTTTGAATATACCATCCTCGTGAATAGTTTGATTGGCCATTTTTTCCAGAGTTGAAGTTTTTTTAGATTTAGCATAGGTATTTTATTGATTTTTGCATTTTTTTTTTCA
s caeSp111.Scaffold548     19358  94 -    67506 TATT----------------------ATTCtatt----------------------ttataataaaaaattattaaactGGAACCAA------------------------------------GTACCAATTG----------------------TGGTT----------------ACACTGATGAA--------------------------------------------TTATGGAATA-------------------------------------------------------------------------------------ATACttactttttca
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       230164 1031 +   783054 I
e cb4.chrX              21395139 380 - 21540570 I
e caeRem4.Crem_Contig24   737750 1914 -  1162296 I

a score=-35.000000
s ce10.chrX              1035051 4 + 17718866 AACC
s caeRem4.Crem_Contig24   739664 4 -  1162296 aaca
i caeRem4.Crem_Contig24 I 1914 C 0
s caeSp111.Scaffold548     19452 1 -    67506 ---a
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       230164 1031 +   783054 I
e cb4.chrX              21395139 380 - 21540570 I

a score=9530.000000
s ce10.chrX              1035055 178 + 17718866 AAAAAACTTACTTTCTCCGCAGAA---------ATCGATGCATTTTCCAAAGTATCTG---CCAGATCCGTAGTCGTCTCCTGTACTATCATCACTCCATCCATCTTCTGTGTGAGCGTTGTTTCAAATACAGCCTG---CATTGGGACA--GAGGAGGTAATCAATACATTTGGATGCACATCCCACAACACAT
s caeRem4.Crem_Contig24   739668 177 -  1162296 aaaatactTACTATTTCTACTGCACCTTCCACAGGAACTCCATCTTC---CGTCTGTGTCTTCGAGCCGGTTGCATTTCCCT---CTGCAGCCGgcccattcattttttgtaccTCTGTCGGTTCTAATACAGCCTG---CATTGGGAAA---------CAATCAATATACTGCGATGCACATTTCCCAACACAC
i caeRem4.Crem_Contig24 C 0 I 46
s caeSp111.Scaffold548     19453 153 -    67506 --------cattttccgat--------------gccgattcattttc---agtttcaagaTTAGACGTTGTCGCATTCCCCT---CATTGGTTCCCCCGTTCATTTTTGCCACATGCGTTGATTCCATTTTGTCCTG---CTTGGTGAAA-----------ATCAATACATCGGGATGCACATTCTACAACATTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       231195 177 +   783054 aaaatactcactttttctttaGAA------ATAACCAATTCCTCGTT---GTTGTCTGAACCCGAACCCCCTGCATTTTCCG---CATTTGTTGTACCATTCATCTTT------TGAGTGAACGTCTTGTTGTTTTGAcctttggagaaaaaagaggggcGATCAATACACCGGGATGCGCATTCTACAGCACTG
i caePb3.Scfld02_62     I 1031 C 0
e cb4.chrX              21395139 380 - 21540570 I

a score=-1882.000000
s ce10.chrX              1035233 18 + 17718866 A-----CACACACTGTGTTCTCT-------------
s caeSp111.Scaffold548     19606 18 -    67506 C-----AATatgtctttttctct-------------
i caeSp111.Scaffold548  C 0 I 28
s caePb3.Scfld02_62       231372 36 +   783054 CCCGGGggtcctcctttttctttctcgttGTCCTCT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21395139 380 - 21540570 I
e caeRem4.Crem_Contig24   739845 46 -  1162296 I

a score=-833.000000
s ce10.chrX              1035251 28 + 17718866 TCTCTTGCAGGGCAATTGAAGGGCTGGC
s caePb3.Scfld02_62       231408  7 +   783054 ACTCTC---------------------T
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21395139 380 - 21540570 I
e caeSp111.Scaffold548     19624 28 -    67506 I
e caeRem4.Crem_Contig24   739845 46 -  1162296 I

a score=11579.000000
s ce10.chrX              1035279 91 + 17718866 CAGTGGAGCGCGGTTGCGTAGCTGCGGCGGCT-ACGTGGTTAACAGACGTTGCCCTTTTCCTTTCAATGCGTATTTCA---CCATCGTTTTTTGC--
s caeRem4.Crem_Contig24   739891 83 -  1162296 cggtggagcgcgtttgctgcGC-GCGGTGGCCAACGTGGTTAGCGGACGTCGCCTTCCGCGCA------CATATTTCA---C--TCGACTCTCCC--
i caeRem4.Crem_Contig24 I 46 C 0
s caeSp111.Scaffold548     19652 95 -    67506 CGGTGGGGCGCGTTTGCATTGC-ACACCCGCCAACGTGGTTTGCCTACGTTGCGTTCCACACCCCCTT-CTTTCTTTATACCAATTAGCCCATTCGT
i caeSp111.Scaffold548  I 28 I 19
s caePb3.Scfld02_62       231415 92 +   783054 CAGCGGGGCGCGTTTGCACAGC-GCAACAGCCAACGTGGTTAGTCGacgtttctttcttctctttcct-cgTCTTTCA---CCATCTGCCCTCTTAC
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21395139 380 - 21540570 I

a score=-5797.000000
s ce10.chrX              1035370 146 + 17718866 ATTTTTTTTATGGAATTCGAATGTTGTTTTTGGATTTTTCAAGTTACGATTTAAAAATTTAATTTTCGTAATTAAAACTTTCAATGTTTTTGAAAACATGTCCGATTTAATCCAACTTTTCGCATTTTCCAACAAATTGCAAAATA---
s caeRem4.Crem_Contig24   739974  84 -  1162296 --GTTTTCTGTGTGTTTCG------GTTATTG----------------------------------CGCGAC-----CTTTTATTGTTCTT-------TGTACAgtt--------ctcctctctttttcggGTATATTCGTGCATA---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       231507  82 +   783054 --ACCCTTCATTTGCATTG-----TGTTGTTG----------------------------------CGCAAAGAACGTTTTTAT------------------CGGTT--------TTCTATCTATATTAATGTTTATTTGACCGTTACA
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21395139 380 - 21540570 I
e caeSp111.Scaffold548     19747  19 -    67506 I

a score=-1436.000000
s ce10.chrX              1035516 14 + 17718866 ATTTCTTCTATTAA---
s cb4.chrX              21395519 12 - 21540570 -----ATTCATTgtact
i cb4.chrX              I 380 C 0
s caePb3.Scfld02_62       231589  6 +   783054 --------TATCGA---
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     19747 19 -    67506 I
e caeRem4.Crem_Contig24   740058  0 -  1162296 C

a score=30226.000000
s ce10.chrX              1035530 127 + 17718866 GTTTTT------ATTTTCAG--AGTAATGGAGCTAACGCTAATTGCCCGTGTACGAGACGGCCTTATTTTGGCCACATCGATTGAAGGAAACAATGACGGCAGTGTAAGTTGCCA------------------------------------TTT---------TTCATTTTCA----------------AGTTAAT---------------------
s cb4.chrX              21395531 209 - 21540570 atttttaaaattatttttagaacaaaatGGAACTAACGCTCATTGCTCGTGTTAGAGATGGACTCATTTTGGCGACATCGATTGAAGGAAACAGTGATCAaagtgtgagttttttttttttgagactggtggaagctttgaaaaaagctGATTCGTGAGCATGCGGTTATTTAGAGAGATGGGAATAATCTTCTTT--------CGATGatttctat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   740058 173 -  1162296 ATTTTGTcgg--attttcagcagaaaatgGAGTTGACACTGATAGCTCGTGTCAGAGATGGACTTATTTTGGCTACATCAATCGAAGGAAATAATGACCAAAGTgtaagtttttt-------------aaagaaa----aaaaaagtcaaattc---------tagttttttg----------------cttCCATATCACCGCcgatcaatttttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     19766 124 -    67506 GTATTGAT----TTTTGCAGTAGAAAATGGAGTTGACTCTGATTGCTCGCGTTAGAGATGGGCTCATTTTAGCAACATCGATTGAAGGAAAC---GACCGCGGTGTAAGTT----------------------------------------TTC---------CACATTTTAA----------------AGTTTAT---------------------
i caeSp111.Scaffold548  I 19 I 214
s caePb3.Scfld02_62       231595 144 +   783054 ------------ATTTGCAG--GAAAATGGAGTTGACACTGATTGCACGAGTCAGAGATGGACTAATTTTGGCAACTTCGATCGAAGGAAAT---GATCGcagtgtgagtttttt----tttcaattcttcaatc----aaaaatagcgaattt---------catatttt------------------tgttcat---------------------
i caePb3.Scfld02_62     C 0 I 26

a score=96388.000000
s ce10.chrX              1035657 387 + 17718866  
s cb4.chrX              21395740 449 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   740231 437 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     20104 466 -    67506  
i caeSp111.Scaffold548  I 214 C 0
s caePb3.Scfld02_62       231765 625 +   783054  
i caePb3.Scfld02_62     I 26 I 141

a score=103645.000000
s ce10.chrX              1036044 163 + 17718866 G------------------------CGACGT-GCTTCAGACAAATACATCCAACAAGCTAAACAAAGATATGGAGACACCAACAAACACGCAATGAATACGGTATCCAATGAGCTCCAGGACGTCACAAGAATTATGGTCACTAATATCGAAGATGTCATTCATCGAGGAGAAGCTTTGAATAGTGAG
s cb4.chrX              21396189 163 - 21540570 -------------------------aaactgaatttcagacaagtaTATTCAACAAGCCAAACAAAGATATGCCGACACAAACAAATACACGATGAACGCGGTTTCAAATGAGCTTCAAGACGTCACCAGAATTATGGTTACCAACATTGAGGATGTCATTCATCGCGGAGAAGCTTTGAATAGTGAG
i cb4.chrX              C 0 I 80
s caeRem4.Crem_Contig24   740668 162 -  1162296 -------------------------ATATTG-GTTTCAGACAAATACATTCAACAAGCCAAGCAGAGATATGCGGATACAAACAAGTACACAATGAACGCCGTGTCAAATGAGCTTCAAGACGTCACAAGAATCATGGTTACCAACATTGAAGACGTCATTCATCGTGGAGAAGCTTTgaatagtgag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     20570 157 -    67506 ------------------------------g-atttcagACAAGTACATCCAGCAGGCAAAGCAGCGTTATGGAGACACAAACAAGTACACAATGAACGCAGTTTCTAATGAGCTACAAGACGTCACTAGAATTATGGTTACAAATATTGAGGATGTCATTCATCGTGGAGAGGCATTAAATAGTGAG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       232531 187 +   783054 GAGAGGTGGAACATATGAAAATAACTGCTTG-ATTTCAGACAAATACATCCAACAAGCTAAGCAGAGGTATGGAGACGTCAACAAACACACAATGAACGCGGTTTCCAATGAGCTTCAAGATGTCACTAGAATCATGGTCACAAATATCGAAGACGTTATTCATCGTGGAGAGGCATTGAATAGTGAG
i caePb3.Scfld02_62     I 141 C 0

a score=726.000000
s ce10.chrX              1036207 2 + 17718866 TT
s caeRem4.Crem_Contig24   740830 2 -  1162296 tt
i caeRem4.Crem_Contig24 C 0 I 47
s caeSp111.Scaffold548     20727 2 -    67506 TC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       232718 2 +   783054 TT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21396352 80 - 21540570 I

a score=-541.000000
s ce10.chrX              1036209 7 + 17718866 G---ATTTTC
s caeSp111.Scaffold548     20729 7 -    67506 GCCAATT---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       232720 6 +   783054 ----ATTCTC
i caePb3.Scfld02_62     C 0 I 58
e cb4.chrX              21396352 80 - 21540570 I
e caeRem4.Crem_Contig24   740832 47 -  1162296 I

a score=-1599.000000
s ce10.chrX              1036216 104 + 17718866 TTCCTGAAAAATTCAGCTTTTCTCTAACTAATAACTATGTTTGGACCTTGCATTTATCGACCTTGGTCAGTGCGCTAGATGATTTTGTCACTGCACCACACATT
s caeSp111.Scaffold548     20736  36 -    67506 ------ACAAATACAGC--------------TAACAGTATTTG--------ATATAT-------------TCCGCTA---------------------------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       232726  58 +   783054 I
e cb4.chrX              21396352  80 - 21540570 I
e caeRem4.Crem_Contig24   740832  47 -  1162296 I

a score=-1085.000000
s ce10.chrX              1036320 28 + 17718866 TTTTTTAGCTTATAAACGTTTTTTTCCC
s cb4.chrX              21396432 26 - 21540570 TTTCCCAGcacg-atgtttttttttgc-
i cb4.chrX              I 80 C 0
s caeSp111.Scaffold548     20772  7 -    67506 --------------------TTTTTCC-
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       232726 58 +   783054 I
e caeRem4.Crem_Contig24   740832 47 -  1162296 I

a score=-36110.000000
s ce10.chrX              1036348 263 + 17718866 GATAAGTGATTTTTCAAATATGTTGTAT--TTAGTAGTA-------CAATTCAGTATTGTTTGGAAATTTTAATAATTTTTAAGCCAGTCGCCACGTTTGGACAACTCACTATTTGAAACTGTTCACAATTTTGATTGGTGTTTTTGAAAATTTACTTTTTTAC----TTTTTAACTTTAACAAATAATTAAGCTTATTAATGTTTTGTTT-------------TTTTTTATTGAAAAAAGTAGATAATCAAAAAGAAAAAAAGAAACGTTTTTTTGCACGTACATTCC-------------
s cb4.chrX              21396458 149 - 21540570 gacaAAT----------ACGT-TGGCAT--TTAGGCGTAGATAAGTCAAATTTAtgcttttcaaaaacgataaTTACTTTTCA--------------------AACTC-CAAT----AACCGT-------------------------CAATATGCCTGATTCA----TTATTAG-------------------ATACAAACATCCTTTCTGCGAAA-------TGTCTTGCTTGAA-----GAACA-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   740879 202 -  1162296 GAAAAGTGA--TACCAAACAT-CGGAATAGTTAGAAATAGCCA--TAGAATACG------TTAGGAATGAAAGCTA-----------------------------------------AAACGT----------------------AGGAAATCcgcgtttttcaat--ttatgaa------GGAAAATGTAAGCAGACTAAAATCTGAGCTGTGAGCTCGTTCTTTTCATGTTCAAA-----GGGAAGCCATCAAG----TGAGAAATTT---------AAGGAAATTCTATGATAATCTTT
i caeRem4.Crem_Contig24 I 47 C 0
s caeSp111.Scaffold548     20779 131 -    67506 ------------------------------ATAGAAATA------TGAAGTCTG---------------------------------------------------------------AGGGGG----------------------AGtagatatttttctttcgtctgtcataaa--------aaagtgtca--caaaaaatgtcctACCT-------------ATTTTTGCT----------AATAACTCGGACG----AGAGAaacctttttctcaaaagcTAGtcc-------------
i caeSp111.Scaffold548  C 0 I 29
e caePb3.Scfld02_62       232726  58 +   783054 I

a score=-2985.000000
s ce10.chrX              1036611 58 + 17718866 TTTTGGTCAGTGCATTTTATATTTTCTGGTCAGTGCATTTTATATTTTTTG----GTCAGTG
s cb4.chrX              21396607 29 - 21540570 -----------------------TCTTGTTGCG------AAATATGTTTTG----TGCAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741081 46 -  1162296 TATAGGTC-------------TTTCCTGGTGCGC---TTAAATAAGATTTAATGCTCCCCGG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       232726 58 +   783054 I
e caeSp111.Scaffold548     20910 29 -    67506 I

a score=-14192.000000
s ce10.chrX              1036669 68 + 17718866 -----------------------CATTTTAAATTG---------------GGTCATTGATAAGTCGCGGAAA----AAATAAGTGGTCATTCGATTGCAAACTCTCTCAA
s cb4.chrX              21396636 41 - 21540570 AACTTGAGTTCA-----CGAAAACGTTGAATCTCG----------------------------------------------------caattgtttga------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741127 97 -  1162296 TACATGAATACAACCTTAGCAGCCAccaaatctcaatttttgtcctATAAGATTAATAATAAGCCA-GGAGATCCCAACCAGGAgatcaacaactttt------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     20939 34 -    67506 --------------catttaaaatattgaaaacta--------------------------------------------------gTAAATTGATTAA------------
i caeSp111.Scaffold548  I 29 C 0
e caePb3.Scfld02_62       232726 58 +   783054 I

a score=53230.000000
s ce10.chrX              1036737 319 + 17718866 TTTTCAGTTCTGGAAAACCGAGCATCCGAATTGTCTGGAATGAGCAAAAAATACAGGGATGACGCGAAAGCCCTGAATCGACGATCAACCATTTTCAAAGTAGCAGCCTCGATTGGAATTGCCGGAGTTCTTTTCCTCATGCTCCGCTTCATTTTCTTCTAGAATTACA--------------------AAA-----------------------------------------------------------------------------------------------------TTACCTATTT----------------------------ATTT--CTCAAACAAAAAAAGAATCCTGATGGGTGTTTTTCTTTTCTCGCTGCTAAATTATTGTGTTT-TTCACCTTCCTTCCAAATCATACGAATAC-----TGTGTTAAATGtattttatttttttgaaa------------tttaatgaaa--------aaa
s cb4.chrX              21396677 299 - 21540570 tttttagttttggagaACCGTGCTTCCGAGCTCTCAGGAATGAGCAAGAAATATCGTGACGACGCCAAAGCGCTGAACAGAAGATCGACAGTTTTCAAAGTAGCCGTGTCTATCGGAATCGCTGGTTTCCTCTTTCTTGTCGCACGTTTCCTTATTTTCTGA--CTTGA------------------ACATA-----------------------------------------------------------------------------------------------------CGCCATAGTC----------------------------ATTTAACGCA------------------AGGGGTGTGtta---tt-------ttaaattatttctttatttttca-aacatttgtaTCAAGAAAAGTGGTT--TTTCATAAATGAATCT------TCGGAGAGtgcccagtttttttttggaaa-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741224 282 -  1162296 ttttcagttctggaGAATCGCGCATCTGAATTGTCTGGAATGAGTAAGAAGTATCGTGACGACGCAAAAGCGCTGAACAGAAGGtcgacaattttcaaagtGGCTGCTACAATTGGAATCGCTGGCTTCCTCTTCCTGGTTGCgcgtttcttcattttctaatttttgg------------------cCAGT-----------------------------------------------------------------------------------------------------Tccctttttt----------------------------aatt--ttca------------------atggGTGTCTTC---TTCTCGCGACTAAATTATTTTGTTA-CGTTCA-ACAACtc---tcaacaaaaattttc--tgtgttatatgaattt---------gaaa-----------------tgaaa-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     20973 430 -    67506 ATTTCAGTACTGGAGAATCGTGCATCGGAATTGTCTGGAATGAGTAAAAAATATCGCGATGACGCCAAAGCGCTAAACCGAAGATCCACCATCTTCAAAGTAGCTGCTTCGATCGGAATTCTTGGAGTTCTATTCCTGATGGCTCGgttcatcattttctaggTCTCTGGACTTATTATGGGGCTATTCACGAggtggaaaaaggaaaaagtatctaaaaataggattttttccattttcctaagaatcttttctatttttataggaatttttcctatttttcaaggatttttttccttttttccatctcGTTAATAGCCCaattatttctgttt--caca------------------aTGGGTGTCTTT---TTCA-----TCATGTTATTATATTT-CCCAca-acttttcaattgataCGAAAGCGTTA-TGTGTTATACAtttat------aaataaa-----------------tgaa------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       232784 301 +   783054 ttttcagttctggaGAATCGCGCGTCGGAGCTGTCAGGAATGAGCAAGAAATACCGTGACGATGCTAAAGCTCTCAACAGAAGAtctacaattttcaaagtcgCTGCCTCAATCGGAATCTTGGGGATTCTTTTCCTCATGGCtcgttttatcattttttaaaccTCTA------------------TCAAG----------------------------------------------------------------------------------------TTCAAAGACCTTGTATTCTTTGT----------------------------GTTC------------------------ATGGGTGTGTTTC--TCCA-----Ttaaattattactttt-ttcgc---CATTTCATACGACAAGTCATTCTTACTGTGTTATATATATTT------ATGAAAA-----------------TGTGGTAGTAAAA---
i caePb3.Scfld02_62     I 58 I 41

a score=527.000000
s ce10.chrX              1037056 5 + 17718866 attac
s cb4.chrX              21396976 5 - 21540570 atttt
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig24   741506 5 -  1162296 attaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21403 5 -    67506 actct
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       233085 41 +   783054 I

a score=-3419.000000
s ce10.chrX              1037061 38 + 17718866 aaaaaaaaCAATACAAGCACACATCAGATTTGCCGCGA------
s caeRem4.Crem_Contig24   741511 36 -  1162296 -aagaaaaaaacat-------tatcagGTTGATCACTCGTTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21408 16 -    67506 ------aaaaa--------------agtttgat------tta--
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       233085 41 +   783054 I
e cb4.chrX              21396981 16 - 21540570 I

a score=180.000000
s ce10.chrX              1037099 1 + 17718866 T
s cb4.chrX              21396997 1 - 21540570 T
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig24   741547 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21424 1 -    67506 T
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       233085 41 +   783054 I

a score=-14301.000000
s ce10.chrX              1037100 298 + 17718866 TCAGCTGGAGTGAACGTTGTAGACTGAAAATTAAAGTTATATTTTTCAGGGTATTTGAAAACT--------TGCCTGTCCACCAATCCAGGCTTTATATTGTTGATCATTGCCATCTGTATTATGTTGAGCTTCAAACTTTGGCATAGAGGAAGAAGGGGCAGAACATGCTTTAT---Ctaaa---taattatattttttaattGGAACTTTCAGATAAAAAATGTAACTGGTACAAATATTTGTAATGTTTGCGGAACTTTTTT------TTTGGTGACCAGAAAATTGAATTCAAAATCTAGAAGTATTCGAA--------------GTT---------------
s cb4.chrX              21396998 191 - 21540570 TCAGCAGGAGTGAATgttgttgtctgaaaaattgatagaaaaggctaattttaaaacaaaaat--------cactTGTCCACCAATCCATGCTTTGTATTGAGTTTCCTCATCGTTGACGTTGTCATGGGATTCAAATTTTGG--CAGAGAA----------------TTTGTAT---CTAAT---GA----------------------------TATAAATAAT-------------------------------------------------------------------------TTAAGAACtcaatcaa--------------attgaa--------aaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741548 211 -  1162296 TTAGCCGGCGTGAACGttgtagtctg-aaaattgaaagttatTGCGA----TGGCGTTAAAATTTT----CTACCTGTCCTCCGATCCATGCCTTGTACTGCTCGTCGCTAGCGTCAGTGTTATGTTGTGACTCAAAT-------CGGGGAA--------------------------CTGAA---GA----------------------------TGCAGAAGAT-----------------------GTGGGGCGGCT-----------GTCTGCA--------------------ATTAGGGACTTCTTCAATTTGTCTAGTAGGGGTTGAG--------AAT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21425 292 -    67506 TGAGCCGGTTTGAAGGTTGTTGACT---------GTAATATATTCGTGCTTTAATGATTAAATTGGATGTTTACCTGCCCTCCAATCCATGCCTTGTACTGTTCGTCATTAGTGTCGGCGTCATGTTGAGATTCGAATCGAGGGACAGAGGGAGAGGAGAgtaatgttttttctttcactaaatttgaactttttt--------------------tgctgGTTCT--CTT-------TGCTTGCACACATTTACCTGCGTTCTTGTGCAAGTGGGTATCATCATCATTACTTCC---ATTTGGAACTTGTTCAT--------------ACTGtaatgttttcagtt
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       233126 282 +   783054 TTGGTCGGTGTGAACGTAGTAGTCTGAACAAAAAGTTGTAACTACGTGTATGAAATAATAACTAGG-----TACCTGTCCTCCAATCCAAGCTTTATAGTGTTCATCATCAGTGTTCGCTGGTCCTTGTGCTTGAAATTTTGGCACAGATGAAGATGGAGCAGAAGTTTTAGCAT---CTGAA---GAACATCAGT-----ACTAGAG-----AAATAATGAATCTAACTT-------ACCGGATTCTGATTTGCCAGCTTTTTC------GTCAGCGTCCTCGTCAGT---------ATTCGGGACTTGCTCAT--------------ACTGCA--------AGTT
i caePb3.Scfld02_62     I 41 I 17

a score=-3784.000000
s ce10.chrX              1037398 14 + 17718866 -------------TTTACCAG---AAAAAA
s cb4.chrX              21397189  8 - 21540570 -------------cctaCTCT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741759  8 -  1162296 -------------TTTACCTG---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21717 24 -    67506 ttcagacaATCGCTCTAGACGAAT------
i caeSp111.Scaffold548  C 0 I 11
e caePb3.Scfld02_62       233408 17 +   783054 I

a score=-8032.000000
s ce10.chrX              1037412 49 + 17718866 AACGTTACAAATATTTCACTTATAAAAACTATTGAAAAAAGGAGACTGA-
s caeRem4.Crem_Contig24   741767  1 -  1162296 --------------------------A-----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21752 44 -    67506 AACAccatttaaattttta------gaactATCTGGTAACAGGAAACAAA
i caeSp111.Scaffold548  I 11 I 194
s caePb3.Scfld02_62       233425 35 +   783054 AATATTATGAATGATTTTAT--GAGAAGTTTTTAGGT-------------
i caePb3.Scfld02_62     I 17 C 0
e cb4.chrX              21397197  0 - 21540570 C

a score=611.000000
s ce10.chrX              1037461 3 + 17718866 TGG
s caeRem4.Crem_Contig24   741768 3 -  1162296 TGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       233460 3 +   783054 TAG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21397197 0 - 21540570 C
e caeSp111.Scaffold548     21796 194 -    67506 I

a score=-10816.000000
s ce10.chrX              1037464 165 + 17718866 GCATTCACTGAAGCTGCTCACC-----AAAGCACTGACCAAGTTAACCAAACGCACTGACCAAACTTATCAAATGCACTGACCAA-----GTTTACCAAACGCACTGGCCAAAGT-TATTTCTGCTCTGTTCAA-----CCTTGTACTCAGTTGA--GTTTTTATTTCTTACAAAATCTCACC
s cb4.chrX              21397197  62 - 21540570 ------------GTTGCTCACCATGCGAGA--------------------------------------------------------------------------------------TTTTACTGCCTTCCGGAA------CTTGCTCATACTGGA--ATTTTTATAAC---------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       233463 131 +   783054 -----------Gcccgcccatttttcaaaaacataaaaaaagatga-------------------ttgttAA------GAACCGACCAGCCTTCATACGGTGCACTGctggtggtttttttttgctgtgaaGAATACTATTTTGATCTTCTTAGATTactattgaaa----------------
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     21796 194 -    67506 I
e caeRem4.Crem_Contig24   741771   0 -  1162296 C

a score=-11832.000000
s ce10.chrX              1037629 81 + 17718866 TTCTTCAGATTTCTCTACATCTTCGGTAT--CTTCA---TCAACTTTTACATACTGAAACATAAAAATACTCAAATAGTAGCACCC---
s cb4.chrX              21397259 22 - 21540570 --------------------ACTTCTTGT--CTTCA--------------------------TGTTATTC-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741771 84 -  1162296 TTCTTCTGGTGATTTTGAATCCTTTTCGT--CATCATTCGGAACTTGCTCATACTGAA--ATTGctattttc-aataataaaattgCCA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       233594 28 +   783054 --------atatttttcaaaatttatgataAATTCA-----------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     21796 194 -    67506 I

a score=28363.000000
s ce10.chrX              1037710  99 + 17718866 TTCAAGCACTCACTTCATAAATAACTTTATCATTTTTCTTCCAAAACTGCACATCGGAGTCGTTATTGAGCTCTAAGAAGATAAAAT-----ATTAGTACTATT---------
s cb4.chrX              21397281 106 - 21540570 ---AA--ACTTACTACATAATGAACTACATTGTTCTTCTTCCAGTATTGCACATCAGAGTCGTTATTCAGTTCTG--AAGTTAtttttttGCAGGATTTATGTTTTAATTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741855 102 -  1162296 GCAAT--ACTCACCACATAGTGGACaacgtcatttttcttccaatattGGACATCCGAGTCGTTGTTCagttctggaaaatta---------aatatatatttttcgaCTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     21990  90 -    67506 TCTAATCACTCACAATATGATGGACtacatcatttttcttccagaattgCACATCAGAGTCGTTGTTCAATTCTG--AAA------------gccaaaaatgtt---------
i caeSp111.Scaffold548  I 194 I 4
s caePb3.Scfld02_62       233622  89 +   783054 ---AAGCACTCACAACATAATGAACCACGTCGTTCTTCTGCCAATATTGAACGTCGGAATCATTgttcaactctg--aaaat----------gtcGTTACTGTT---------
i caePb3.Scfld02_62     C 0 I 16

a score=-4922.000000
s ce10.chrX              1037809 24 + 17718866 GAACTACTGAAATTGCCCAAAAAA-----
s cb4.chrX              21397387 24 - 21540570 -----GAATGATTTTAAGGCCATAACAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741957 24 -  1162296 -----ATCTGAGTTTCCatataaaaaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22084 15 -    67506 ---------ggCTTGTCGAATATT-----
i caeSp111.Scaffold548  I 4 C 0
e caePb3.Scfld02_62       233711 16 +   783054 I

a score=75642.000000
s ce10.chrX              1037833 148 + 17718866 TTAAAATTACTCGTGTTCCGGTTTGTTCCAAATGCAGGCTGTCCCTTCTGTGAAGCGAATTTATTGGAGCCGTATTCCCAGGAAATATAACTTGGCAGAATTATTTTTCTCTTGTGCTTCTCAGCTTGCTTTTTGGCATACTCCTGGA
s cb4.chrX              21397411 145 - 21540570 ---TTCTCACttgtatttcggattgttccAAACGCAGATTGACCTTTCTGTGAAGCAAACTTGTTAGAACCGTACTCCCAAGATATGCAAGTTGGCAATATTATTTTCCGTTTATGTTTCTCAGCTTGCTGTTTTGCATAATCCTAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   741981 144 -  1162296 ---cacataCTAGTGTTACGAATAGTGCCGAAAGCAGATTGACCCTTCTGTGATGCGTATTTATTTGTTCCATACTCCCAAGAGATAACGTTTGgcagaattatttttcttttgtgtttttcggCTTGTTGCTTGGCGTAATCCTGA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22099 145 -    67506 ---ATATTACTTATATTGCGAATTGTGCCAAAAGCAGCACCGCCTCTTTGAGACGCAAACTTATTCGAGCCATATTCCCACGAGATGTAATTCGGTAGAattattttccttttgtGCTTTTCGGCTTGTTGTTTAGCGTAATCctaaa
i caeSp111.Scaffold548  C 0 I 29
s caePb3.Scfld02_62       233727 148 +   783054 TTTATCTCACTTGTATTTCGTATAGTGCCAAAAGCCGATTGTCCTTTCTGGGAAGCAAACTTATTTGAACCATATTCCCACGAGATACAGCTTGGTAAAATGATTTTCCGTTTGTGTTTTTCGGCTTGTTGTTTAGCGTAATCCTGAA
i caePb3.Scfld02_62     I 16 C 0

a score=-1304.000000
s ce10.chrX              1037981 38 + 17718866 TAACCACAACATGAAGTGTGAAAAATCTTTTCTAATGG
s cb4.chrX              21397556 14 - 21540570 ------------------TAAAGAAT------GAATGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       233875 11 +   783054 ---------------------GGAAG------AAATGG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     22244 29 -    67506 I
e caeRem4.Crem_Contig24   742125  0 -  1162296 C

a score=498.000000
s ce10.chrX              1038019 38 + 17718866 TCATTATAGAATTATGGTAAAATTTGGTAAAACGGACT
s cb4.chrX              21397570 31 - 21540570 TAACTATAatat-------gaattcaaaaagatgAACT
i cb4.chrX              C 0 I 97
e caePb3.Scfld02_62       233886  0 +   783054 C
e caeSp111.Scaffold548     22244 29 -    67506 I
e caeRem4.Crem_Contig24   742125  0 -  1162296 C

a score=335.000000
s ce10.chrX              1038057 17 + 17718866 AACTTTTTAAATATAAA
s caeRem4.Crem_Contig24   742125  9 -  1162296 --------GAATACAAA
i caeRem4.Crem_Contig24 C 0 I 3
e caePb3.Scfld02_62       233886  0 +   783054 C
e cb4.chrX              21397601 97 - 21540570 I
e caeSp111.Scaffold548     22244 29 -    67506 I

a score=0.000000
s ce10.chrX              1038074 49 + 17718866 ATAAGTCTGACGTCACCATATTCCTAATAATAACTCGAATTTCCAAGAA
e caePb3.Scfld02_62       233886  0 +   783054 C
e cb4.chrX              21397601 97 - 21540570 I
e caeSp111.Scaffold548     22244 29 -    67506 I
e caeRem4.Crem_Contig24   742134  3 -  1162296 I

a score=-317.000000
s ce10.chrX              1038123 88 + 17718866 ACTGAAAATATTTGTCTTTCGATGTTTTGCTTTTCGACTTTCCAAATTTTTGGAAAAATTTCATACTTTCGAATAAATTCACTATTTT
s caePb3.Scfld02_62       233886 44 +   783054 ATCGAAAAGGTTT-----------------TTTCCCGCTT-----GTTTTAGAAGAAACTTCGTAC----------------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21397601 97 - 21540570 I
e caeSp111.Scaffold548     22244 29 -    67506 I
e caeRem4.Crem_Contig24   742134  3 -  1162296 I

a score=0.000000
s ce10.chrX              1038211 2 + 17718866 TG
e caePb3.Scfld02_62       233930 0 +   783054 C
e cb4.chrX              21397601 97 - 21540570 I
e caeSp111.Scaffold548     22244 29 -    67506 I
e caeRem4.Crem_Contig24   742134 3 -  1162296 I

a score=-2891.000000
s ce10.chrX              1038213 44 + 17718866 AAAAAAAACTTATATTTTTCTCTTCAAAATCACCGTTGTTTTAT
s cb4.chrX              21397698 38 - 21540570 gaagaaaaaatatatt------tacaCAGTGACAGTCTTTTTGT
i cb4.chrX              I 97 I 57
s caeRem4.Crem_Contig24   742137 21 -  1162296 AAAGAGAGGCTAC-------------------CGgtgttt----
i caeRem4.Crem_Contig24 I 3 C 0
s caePb3.Scfld02_62       233930 15 +   783054 -----------------------------TCaccgtttcttttt
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     22244 29 -    67506 I

a score=-4289.000000
s ce10.chrX              1038257 67 + 17718866 TTAT---TTATTTTTAGACTTATCAATGTTCATACACATCAAAAATTAAAAAAAATCATTTTGTTTCTTC
s caeRem4.Crem_Contig24   742158 25 -  1162296 --aaaaaacatttt---------------------ggtttgaaaactA----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       233945 38 +   783054 -------ccattttt-------tcaa-atacagaaactttgaaaatttcaaaa-----------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21397736 57 - 21540570 I
e caeSp111.Scaffold548     22244 29 -    67506 I

a score=-3487.000000
s ce10.chrX              1038324 46 + 17718866 AACTCACTGTCTCATTTTGCATCTTGTTTCGACAGTTTT--TGAAGAA----------------
s caeRem4.Crem_Contig24   742183 61 -  1162296 CACttactgtttctttttccatt---ttttgacaatttcgaCAGTGAAATAAGATTTCGAACCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22273 35 -    67506 AACTcacagtttctttttccatt---gctCT----------AGGAGGA----------------
i caeSp111.Scaffold548  I 29 C 0
s caePb3.Scfld02_62       233983  7 +   783054 -----------------------------------------tggagaa----------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21397736 57 - 21540570 I

a score=-46685.000000
s ce10.chrX              1038370 372 + 17718866 AAAAAATCAATAGAATCACAAAAATATCTAAAGAAATATCCGCTGCTGCCAAGTTGAATGTTTATTTGAGT--------------CTCGAATGAAACCGAATGTTTGTTCAGTGATTTTTCCAAAGCCACCGGGCTCTAACAGTGTACG---CGGTAGAGGAATAAGTGCT------TTATAAAT-ATAAATTACTTT-----------------ATTACAAACTACAAAAATGCTTAGTCATGTGAGAAACATTGAATA--------TCTG----AGACATG---------AAAAAGGAATGCAAATC-----------ACAGATCGAGA-----------------------------AAACTGTTACAATAAAGCGATGGGTTTTAAATAATATGTACAA-TGAGATATCAC------------AAGTTTTTAACGCCTGCACTTTTTGATGATGATACCCAGTAGAACGACAGTACTCTGAAA
s cb4.chrX              21397793 231 - 21540570 -------------------------ATC----ACATTGTTCG-----------------ATTTA--Taaaaaaacgca-------aagaaaaaagaataaaagcTTAT--------------------------------------------CACAAGATATGCatgattt------tcagcag--aaatATAACTAC-----------------------------------ACTGA--------------ATTAAATG-----TTATCAC----A-ATTTG---TTTTACAAACAATAAAATAACTA-----------AAATATAAACG-----------------------------CAATA------------------------CACAAAATTTACAA-ATAGCCATCAC----------------------TTTTTGCATTTGTTCCAAGCGATGCTCAGCAACACCACAGTACTCTGAAA
i cb4.chrX              I 57 C 0
s caeRem4.Crem_Contig24   742244 390 -  1162296 TGAAAATC---AATATCTCAGCGAAATCC--AAAACTATCCG-----------------AGTTACCTGTGTACACTGT-------GTGAGAAAAAAGCGAATGTTTATTCAGCGATTTTCTTTGAGCTCGGAGCCTCAAACTGCGTGGGAGACATGAAACATCCAAAGTGT------TTGCT----AAATATTAATACTTCATTCgtttcgtttaaaaaaatgc-------atACTGA----------------TAAATAAGCGTTTATCAC----AGAGTTGGAATCTTA-GAAGAGCAACATGACTATT---------AAAGATCAATAACCgaatttaagttttttgcTACTTTGGTCAATCAGT---------------------TACAAAATTTACAATATAATCATCACAATTTACAAATATGTTTCTTATTTCCTGCATTTCTTAATGATGATACGCATTAAGATTACGGTACTGAGAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22308 326 -    67506 -----------AAGATATCAAC-AAATC----AATAAATCCG-----------------ACTGACTTTTGTGTATGTTATATCGCGCAGGTGGAA----ATTGTTTGTTTAGTGATCCTCTTTGAAACTCTTCACTGACAGTGAGTGGG---TGTGTAACTTTTCAAATAC------TGACGatataaataaatttat-----------------tttaaatgctcaaaaaatactca----------------taaata--------ccac----aaaaatgaaat-----gaagtaCACTGCAAGCATGGa-------aaattcccgaa-----------------------------aaaaCATT--------------GGT----TGAAAAATGTCCTG-ATAGATAAAAT-CATTATACAGATAATGTTtattttctgcattttttgtACAAAGTGCTCATGACGACTAccaa---------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       233990 324 +   783054 -----------a-----------aatcc----GAGATACCTG-----------------GCTTACTTGTGTATATATAA------GCAAGATAAAACCGATTGTTTGTTCAGCGATCCTCTCTAAACTCTCGTGCTTTTTGTGAGTAGG---CGGGaggattttgagaaacatCATTTTGCAATA-AGAAATCTTTAT-----------------TATAAATGCCCTTCAATGACAGG----------------C-AATA--------TCACTAGTTAAGTTAGAAT-----GAAGGcaatagaaaatatgaaatcataCAAAGAGGAACG-----------------------------GAAGTATT------------------------------CACAG-ATAAAAAGAAT---TCACACATAAAATATTTAATTcctgcattttttgataattatacCCATAAGAACCACGGTACTCTGAAA
i caePb3.Scfld02_62     C 0 I 44

a score=-7010.000000
s ce10.chrX              1038742 35 + 17718866 ATTTTCCAAAAATATTCAAAATGCTTATGCAATTT-----
s cb4.chrX              21398024 21 - 21540570 ---------ACATTCGATAAACAATTACTT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   742634  1 -  1162296 ---------G------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22634 30 -    67506 ----------aatctagaaaaagattgaatGATAGAagtc
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       234314 44 +   783054 I

a score=69090.000000
s ce10.chrX              1038777 254 + 17718866 --------------------------------CTGCAGAAATTAA-----------------------------------AAAATATGAACTTACCAAAATGATATGTAAAAATGCGATCATAGTAGTTGTCCATCTAAATCCAACTCTTTCAACTACAACGCTACCAAATGTGGGACCAATGAAAGATCTGGAAATTTTTTTAAAGAATTATTAATCTGCAATCAGATTTTTAATTTATTACCCAAATCCAAACGCAGCTTGAAAAATTCCAGACACGCAGCCATAGGTATGGAAATTGTCGTCAAATCCTTTGTCTCTG
s cb4.chrX              21398045 192 - 21540570 --------------------------------CTCCAGAAATCTT-----------------------------------GAA--------TTACCAATATTATGTGTAGGAATGCAATCATTGTTGTGGTCCATCTAAATCCAACTCTCTCCACCACAACACTCCCAAAAGTTGGTCCGATGAAAG------------------------------------------------------AACCAAATCCGAAAGCAGcttggaaaattccagaaacacATCCATATGTATGAAAATTGTCCTCGAAACCTTGCTCTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   742635 165 -  1162296 ------------------------------------------------------------------------------------------------------ATATGTAAGAAAGCAATCATTGTCGTGGTCCACCTAAAGCCTACGCTTTCTACGACGACACTTCCGAATGTTGGACCAATGAATG------------------------------------------------------ACCCAAATCCGAATGCTGCTTGGAAAATTCCGGAAACACAACCATAGGTTTGGAAGTTGTCGTCAAATCCCTTgtctctg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     22664 188 -    67506 ----------------aattga----------------------------------------------------------aaa-----aaccaacCAAGAAAAGATGTAAAAAGGCTATGAAGGTAGTAGTCCATCTGAATCCAACACTTTCCACAATGACACTCCCAATAGTTGGACCCAGGAACG------------------------------------------------------ACCCGAATCCGAAGGCAGCTTGAAATATTCCTGAGACACACCCATAAgtatgaaaattatttttgaatcccCGTTCTCTG
i caeSp111.Scaffold548  C 0 I 4
s caePb3.Scfld02_62       234358 262 +   783054 CTGCATAATAATTAGAAACTGACGTGATGAAGATATAGTAATTTTCAtcttcaccttttttttgtttgaatagtTATATTAAA-----TCCTTACCAAAAGAACGTGCAAAAAAGCAATCATCGTGGTGGTCCATCTGAACCCAACATTTTCTACAACCACACTTCCAAAAGTTGGCCCGATGAAAG------------------------------------------------------AACCAAACCCAAATGCCGCTTGAAAAATTCCTGATACACATCCATAAGTATGAAAATTATCTTCGAATCCTCGACACCTA
i caePb3.Scfld02_62     I 44 C 0

a score=554.000000
s ce10.chrX              1039031 3 + 17718866 CAA
s cb4.chrX              21398237 3 - 21540570 GAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   742800 3 -  1162296 aaa
i caeRem4.Crem_Contig24 C 0 I 45
s caePb3.Scfld02_62       234620 3 +   783054 TAa
i caePb3.Scfld02_62     C 0 I 3
e caeSp111.Scaffold548     22852 4 -    67506 I

a score=-423.000000
s ce10.chrX              1039034 10 + 17718866 -AATTTTGATT
s cb4.chrX              21398240 10 - 21540570 GAATTATGCA-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       234626 10 +   783054 gatttttatt-
i caePb3.Scfld02_62     I 3 I 25
e caeSp111.Scaffold548     22852  4 -    67506 I
e caeRem4.Crem_Contig24   742803 45 -  1162296 I

a score=473.000000
s ce10.chrX              1039044 5 + 17718866 TACAG
s cb4.chrX              21398250 5 - 21540570 TACAG
i cb4.chrX              C 0 I 9
e caePb3.Scfld02_62       234636 25 +   783054 I
e caeSp111.Scaffold548     22852 4 -    67506 I
e caeRem4.Crem_Contig24   742803 45 -  1162296 I

a score=0.000000
s ce10.chrX              1039049 669 + 17718866  
e caePb3.Scfld02_62       234636  25 +   783054 I
e cb4.chrX              21398255   9 - 21540570 I
e caeSp111.Scaffold548     22852   4 -    67506 I
e caeRem4.Crem_Contig24   742803  45 -  1162296 I

a score=181.000000
s ce10.chrX              1039718 16 + 17718866 TTAGAAAATAAATTAA
s caeSp111.Scaffold548     22856 14 -    67506 ttagaaattatttt--
i caeSp111.Scaffold548  I 4 C 0
e caePb3.Scfld02_62       234636 25 +   783054 I
e cb4.chrX              21398255  9 - 21540570 I
e caeRem4.Crem_Contig24   742803 45 -  1162296 I

a score=101.000000
s ce10.chrX              1039734 12 + 17718866 ATGACCCCACAA------
s cb4.chrX              21398264 12 - 21540570 ATGATTTCAGAA------
i cb4.chrX              I 9 I 3
s caeSp111.Scaffold548     22870 17 -    67506 -taaccTCACTAACGTGA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       234636 25 +   783054 I
e caeRem4.Crem_Contig24   742803 45 -  1162296 I

a score=210816.000000
s ce10.chrX              1039746 625 + 17718866  
s cb4.chrX              21398279 584 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   742848 562 -  1162296  
i caeRem4.Crem_Contig24 I 45 C 0
s caeSp111.Scaffold548     22887 549 -    67506  
i caeSp111.Scaffold548  C 0 I 14
s caePb3.Scfld02_62       234661 567 +   783054  
i caePb3.Scfld02_62     I 25 C 0

a score=0.000000
s ce10.chrX              1040371 6 + 17718866 TCAGCG
e caePb3.Scfld02_62       235228 0 +   783054 C
e cb4.chrX              21398863 0 - 21540570 C
e caeSp111.Scaffold548     23436 14 -    67506 I
e caeRem4.Crem_Contig24   743410 0 -  1162296 C

a score=398.000000
s ce10.chrX              1040377 18 + 17718866 CACATAATTTCTTGTCAG
s cb4.chrX              21398863 12 - 21540570 ------ATTACTTATCCG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       235228  0 +   783054 C
e caeSp111.Scaffold548     23436 14 -    67506 I
e caeRem4.Crem_Contig24   743410  0 -  1162296 C

a score=-2508.000000
s ce10.chrX              1040395 91 + 17718866 TGGATCAAAGTTTTTGGTCAGTGCATTACATTTTTTGTCAGTGCAAGTTTTATGGTTGCATTACATAGAATTTTCAGCCAACTTAGATATG
s caeRem4.Crem_Contig24   743410  6 -  1162296 -------------------------------------------------------ttgcGT------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       235228  0 +   783054 C
e cb4.chrX              21398875  0 - 21540570 C
e caeSp111.Scaffold548     23436 14 -    67506 I

a score=0.000000
s ce10.chrX              1040486 8 + 17718866 TTTTGACC
e caePb3.Scfld02_62       235228 0 +   783054 C
e cb4.chrX              21398875 0 - 21540570 C
e caeSp111.Scaffold548     23436 14 -    67506 I
e caeRem4.Crem_Contig24   743416 0 -  1162296 C

a score=-6619.000000
s ce10.chrX              1040494 63 + 17718866 AGTGATAGTTTTAATCGGCGCACAGATT-----ATTTCTACAGATTTTCATAATTTTTCATTATGCTC
s caeRem4.Crem_Contig24   743416 10 -  1162296 --------------------CACGGATT-----AC---------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     23450 10 -    67506 --------------------ACTGTAAT-----AT---------------------------------
i caeSp111.Scaffold548  I 14 C 0
s caePb3.Scfld02_62       235228 15 +   783054 --------------------aatgaacttGTTAAC---------------------------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21398875  0 - 21540570 C

a score=174032.000000
s ce10.chrX              1040557 586 + 17718866  
s cb4.chrX              21398875 517 - 21540570  
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig24   743426 451 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     23460 481 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       235243 493 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-2858.000000
s ce10.chrX              1041143 31 + 17718866 TACAATCTGTTTTATAATGAAAAAAATAAAA
s caeRem4.Crem_Contig24   743877 25 -  1162296 TTAAAT---CATTTTAATCCGGATAACC---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     23941 22 -    67506 ---------CTTTATATTCAGTATTGATTAG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       235736 22 +   783054 ---------ttttattgaaaaaaaaaaccaa
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21399392 19 - 21540570 I

a score=104827.000000
s ce10.chrX              1041174 370 + 17718866 ----------AAAACTCACATATTTTCCAAAAAGCGGTGAAATGATAAACATGGTAAATTCAAAAATTCCAAACACAATTCCTGTCTGCGTTTCTGACAAGTTTTTCAACTTGGCTTCTGCTGGATAAAATGGTGCAATACATGAAAATGCGATTGTTGAGCACAAATTGGCAAGACTAAGCATGGAAATTGAAAGAAGTTGACGGGAAGATAGAGCAGATACTGTGTGAAGAGCACTCTTAAAAAACATTTAAATAAGGGCTAAAAATTTTAAAAAAATCAA------------------ACCTTCAAAAACGGCACCGCCTGCTCTTCATCGGAAATCGCACTGAAAATTGGGAAATCAATTTGGATACTTGTTTCTATATT-----------------TCTAGATTTTCTTA
s cb4.chrX              21399411 302 - 21540570 ----------GCGACTTacatattttccaaaaatgggtgatattatgaacatggtgaactcgaaaattccgaaCACAATTCCCGTTTGCGTTTCAgataaatttttaagtttagCTTCAGCAGGATAAAAAGGTGCAATACACGAGAATGCAACTGTAGAGCAGAGATTGGCAAGACTTAGCatagaaattgataaaatttgtCGAGATGATAAGGCAGATACAGTACGAATTGCACT-----------------------------------------------------------------TTTAAGGAACGGCACCGATTGTTCTTGGTCCGAAACTTCACTGAAAC-------GTTTTTCATGAGTTCTCTttatctttt-------------------------------
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24   743902 357 -  1162296 ----------TTGACTTACgtatttcccaaaaattggtgaaattATGAACatggtaaattcaaaaattccaaaaactattCCAGTTTGAGTTTCCGagagatttttcagtttggctTCTGCTGGATAGAATGGTGCGATACATGAGAAGGCAATAGTTGAGCACAAGTTGGCAAGACTAAGCATTGAAATGGATAAGATTTGGCGGGAAGAGAGAGCAGACACAGTTTGAAGCGCACTCTGTAtgaa---ttagat------ttttaaatttgcaAATTTGAACTAGATCTTGTCCAACTCACCTTCAAAAACGGTACTGTCTGCTCCTCATCCGaaattccactgaaa--------ataatttttgccATACATCaatctatt-------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     23963 375 -    67506 GAGAGT--TTTCGACCCAcgtattttccaaaaagtggTGATATCACAAACATTgtgaactcaaaaattccgaaaacgATTCCAGTTTGAGTTTCAgacaaatttttcagtttagcTTCAGACGGATAAAATGGAGCAATACATGAGAAGGCGACAGTAGAACATAGGTTGGCAAGACTGAGCATTGAAATAGTAAGTATTTGACGAGAAGACAAAGATGACACAGTTTTTATTGtcctctaaaaata-----aaaa------cagtaATGTTGGAGATATTAA------------AGACGCACCTTCAAAAATGGTTGTGCCTGCTCTTCATCAGAAACCTCgctgaaat-aagaaaaagtgatcaaaCTCTACTTAAAAttgtattccaaaaaattcttg--------------
i caeSp111.Scaffold548  C 0 I 150
s caePb3.Scfld02_62       235758 291 +   783054 cagtGTAGATTCAACTTACATATTTACCGAACAGCggtgaaatcaaaaacatggTAAActcaaatattccaaaaacgATTCCTGTCTGCGTTTCTgacaagtttttcaattttgcttcTGCTGGATAGAATGGGGCAATGCATGAGAAGGCTACTGTGGAACACAAATTTGCAAGACTGAGCATTGATATTGACAAgatttgacgggaattcagAGATGATACAGTTTTGTAAGCagcctgaaaaaa----------------------------------------------------------tcgaacgGGATTG---------------------------------------ATGGGTTCAAACTTTTCCTATACTATTGTTC---------------------------
i caePb3.Scfld02_62     C 0 C 0

a score=-14630.000000
s ce10.chrX              1041544 119 + 17718866 CAGAACTTCAAAAGTATCACATAGCAAACAATTATCATTGTGAAAATAAATGTAAAATTTAGAATTTCAAAAAAGAAAACATATTTTTGGTCAGTGAAAAAATTGGTCAGTGCAAAATA
s cb4.chrX              21399713  12 - 21540570 ---------------------------------------------------------------------------------tgttttttccca--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   744259  10 -  1162296 ---------------------------------------------------------------------------------ttctttttgc----------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       236049  70 +   783054 ------------------------------ATCTTCAGTGTGATCATTGATTTAAAGAAAATCACCTTCAAAAAT-GGCTGTGCTTGTTCT---------------TCATCTGAGA---
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     24338 150 -    67506 I

a score=60834.000000
s ce10.chrX              1041663 194 + 17718866 AAGCAATTCAAAAAT----TCTCACCT---TTCCTCATCCGAGTCGCTTTCACTACCTTC---GGACTCCTTAATACTAAGCCGTTCTGCAGTTGACTCATAATTGATTTTTGCACTCAGTGCTGACGATCTTGGCCCATCCACTGAGATTTGGGTGGAGATCGGCATAAACGGAGAAATAATGAACGGTCTAAAAATA--G------TCAA---
s cb4.chrX              21399725 186 - 21540570 -------------------ACAAACCT---CTCTTCGTCTGATTCA---GAGCCCTCTTC---CGACTCCTTGATGCTAAGAGTATCCGCTGTACTTTGATAATTAACTTTTGTATTCAGTACAGTTGGTCTTGGTCCATCCACCGATATTTGTGTCGAAATTGGCATAAAAGGAGAAATGATGaatggtctgaaaaaa-aacgtttttagaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   744269 183 -  1162296 -------------------acTCACCT---CTCCTCATCAGAATCACTTTCACTTCCCTC---CGATTCTTTGATACTGAGTGTCTCCGCTGCCGTCTCATAGTTCACCTTCGCATTCAACACTGATGTTCTCGGTCCATCCACAGATATTTGTGTTGAGATAGGCATAAAAGGGGAAATGATGAATGGTCTGAAATAT-GA------TAGGGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     24488 204 -    67506 tattatttttaaaacgtTCACTtacctttcttcttcatcagatTCAGATCCACTTCCATCGGAAGACTCCTTGATGCTCAAAGCTTCCGAAGCGGCTTCATAATGGGCTTTTTGATTCAGCACGGATGATCTCGGTCTATCTACGGATATCTGAGTTGAGATAGGCATGAATGGAGATATAATAAACGGTCTGAAATAA--A------TCAG---
i caeSp111.Scaffold548  I 150 C 0
s caePb3.Scfld02_62       236119 183 +   783054 ---------------CTTCACT--------CTCCTCATCACTGTCACTCTCACTTCCATTCGACGATTCTTTGATACTAAGTTGTTCAGCTTTTGTGACATAATTGACTTTTGTAGTTAAAACAGATGATCTAGGCCCATCAACCGATATCTGTGTTGAGATAGGCATAAACGGCGATATGATGAACGGCCtgtaaaaatga------taaa---
i caePb3.Scfld02_62     C 0 I 156

a score=600.000000
s ce10.chrX              1041857 1 + 17718866 G
s cb4.chrX              21399911 1 - 21540570 g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   744452 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     24692 1 -    67506 G
i caeSp111.Scaffold548  C 0 I 476
e caePb3.Scfld02_62       236302 156 +   783054 I

a score=327.000000
s ce10.chrX              1041858 10 + 17718866 ATAACATTAA
s cb4.chrX              21399912 10 - 21540570 ataaaattga
i cb4.chrX              C 0 I 367
s caeRem4.Crem_Contig24   744453  7 -  1162296 TT---ATTAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       236302 156 +   783054 I
e caeSp111.Scaffold548     24693 476 -    67506 I

a score=223.000000
s ce10.chrX              1041868 13 + 17718866 CAAATTTTTTTGA
s caeRem4.Crem_Contig24   744460 13 -  1162296 TACTTTTTATAGA
i caeRem4.Crem_Contig24 C 0 I 361
e caePb3.Scfld02_62       236302 156 +   783054 I
e cb4.chrX              21399922 367 - 21540570 I
e caeSp111.Scaffold548     24693 476 -    67506 I

a score=0.000000
s ce10.chrX              1041881 1017 + 17718866  
e caePb3.Scfld02_62       236302  156 +   783054 I
e cb4.chrX              21399922  367 - 21540570 I
e caeSp111.Scaffold548     24693  476 -    67506 I
e caeRem4.Crem_Contig24   744473  361 -  1162296 I

a score=496.000000
s ce10.chrX              1042898 23 + 17718866 GTAACTGGCAGCAAAAATTTCGA
s caePb3.Scfld02_62       236458 22 +   783054 GTagcttgtgaaaaaaaatt-ga
i caePb3.Scfld02_62     I 156 C 0
e cb4.chrX              21399922 367 - 21540570 I
e caeSp111.Scaffold548     24693 476 -    67506 I
e caeRem4.Crem_Contig24   744473 361 -  1162296 I

a score=-1349.000000
s ce10.chrX              1042921 25 + 17718866 AAATAATGAAAAACACCTGTACCTG-----------
s caeRem4.Crem_Contig24   744834 25 -  1162296 AAACCCTGGAAAAAAGCGTTT-----------TCAC
i caeRem4.Crem_Contig24 I 361 C 0
s caePb3.Scfld02_62       236480 36 +   783054 gaacaacaaaaactagtttttttttcagaatatcac
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21399922 367 - 21540570 I
e caeSp111.Scaffold548     24693 476 -    67506 I

a score=12419.000000
s ce10.chrX              1042946 38 + 17718866 CTGTTTTCACTGGTTCGAACCATAGCAACAACCGAAAA
s caeRem4.Crem_Contig24   744859 38 -  1162296 CTGTTTTCACCGGTTCGCACCATAGCAATAATCGAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     25169 38 -    67506 CTGTTTTCAGTAGTTCGAACCATAGCAATAAGTGAAAC
i caeSp111.Scaffold548  I 476 C 0
s caePb3.Scfld02_62       236516 38 +   783054 CTGTTTTCCTTAACTCCAACCATTGCAGTACTGGAAAC
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21399922 367 - 21540570 I

a score=77826.000000
s ce10.chrX              1042984 152 + 17718866 GAGACAAAATGCAATATTTTGTCCAATTGAGT------ACGCAACCAGTTATGTTTAACATAAAAATGACAATC-GCCTGCGCGTATAAGCTGTACCGTCAACATTAAATTCGTACAACCCGACATATCT-AGGCACAG-------GGAAGGGAGGAGATGGGATGT
s cb4.chrX              21400289 160 - 21540570 GGGACAAAAGAGACTATTTTGTTCGATTGAGGTATTGAGGGTAACCAGTTAGGTTTAACATAAAAATGAGAATC-GACTGCGCGTATAAGCTGTACCGACAACATTGAATTTGTACATC----TACATTC--GAGAGGACATGTATGGGTGtgagaaaacagagaaa
i cb4.chrX              I 367 I 501
s caeRem4.Crem_Contig24   744897 151 -  1162296 GAGACAAAAGACAATATTTTGTCCAAATGAGG------GGGCAACCAGTTATGTTTAACATAAAAATGACAATCGGACTGCGCGTATAAGCTGTACCGTCAACATTAAATTCGTACAAC-CATCACAATC--TGAAGGA-------GGAGGGGAGGCAAAAGGACGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     25207 149 -    67506 AAGACAATAGGCAATATTTTGTCCAATTCAGG------GGGCAACTAGTTATGTTCAACATAAAAATGACAATG-GCCTGCGCGTATAAGCTGTACCGTCAACATTAAATTCGTACAAC----CACAATCGAGGCAAGA-------ggagggaagaagaagaggtga
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       236554 144 +   783054 GAGACAAAAGACAGTATTTTGTCCAAATGAAG------GGACAACCAGTTATGTTTAACATAAAAATGACAATA-GCTTGCGCGTATAAGCTGTACCGTCAACATCAAATTTGTACAAC----CTCATTT--GGAAAGG-------GAGGgaaaggaaaatgga---
i caePb3.Scfld02_62     C 0 C 0

a score=349.000000
s ce10.chrX              1043136 3 + 17718866 GGA
s caeRem4.Crem_Contig24   745048 3 -  1162296 GGA
i caeRem4.Crem_Contig24 C 0 I 612
s caeSp111.Scaffold548     25356 3 -    67506 AAA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       236698 0 +   783054 C
e cb4.chrX              21400449 501 - 21540570 I

a score=200.000000
s ce10.chrX              1043139 2 + 17718866 GG
s caeSp111.Scaffold548     25359 2 -    67506 GG
i caeSp111.Scaffold548  C 0 I 926
e caePb3.Scfld02_62       236698 0 +   783054 C
e cb4.chrX              21400449 501 - 21540570 I
e caeRem4.Crem_Contig24   745051 612 -  1162296 I

a score=528.000000
s ce10.chrX              1043141 22 + 17718866 ACGGAGGGGGTGAACACAAGAA
s caePb3.Scfld02_62       236698 19 +   783054 ---aaggtGGAGAAATAAAGAA
i caePb3.Scfld02_62     C 0 I 295
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I
e caeRem4.Crem_Contig24   745051 612 -  1162296 I

a score=0.000000
s ce10.chrX              1043163 1103 + 17718866  
e caePb3.Scfld02_62       236717  295 +   783054 I
e cb4.chrX              21400449  501 - 21540570 I
e caeSp111.Scaffold548     25361  926 -    67506 I
e caeRem4.Crem_Contig24   745051  612 -  1162296 I

a score=686.000000
s ce10.chrX              1044266 56 + 17718866 AATCCCACTTACTTTT---TTGTCATTTTTGAATATCTAAGCAAGCTTGAGCTTCTACT
s caeRem4.Crem_Contig24   745663 53 -  1162296 AAACCCACTGACTTTTGCCTCGTAAATCGTGAATCTCCCA------TTGAGCAagtaga
i caeRem4.Crem_Contig24 I 612 C 0
e caePb3.Scfld02_62       236717 295 +   783054 I
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I

a score=23311.000000
s ce10.chrX              1044322 312 + 17718866 GAAAATTGAGGAATCAATATA-ACAAAGTGTAAAATCGGCACGAGGGGAGGTACTTTGCCAACACAAATATCGGAAAACAACGTGGTGGGAGAGAATTTTTGCCGTTTGTTTCGACACCTTCGTCTACTATCTCTCCCACTTTC-TCTTTTGTTTTGTTATTATGATTTCAAATTTTCATGAAACATTT--------GTAAAACCGAGAGCTTATGAAATATTGCATCACCTTGGCTTTTTCTTCCGGTTTAATCCCTGCAGAGTGTTGAATCTCGGACGGCGTCTTTTCTTTCGGGCAAACTCTCGTGGACCAATCTGAAA
s caeRem4.Crem_Contig24   745716 260 -  1162296 -gaagagagaaaatcaatatgaaaaaagtgtaaaat---------gaCGGATACTTTGTCAAC---AATAAAACAAAGCATCGTG-----------------------------------------ATTCCgcctcccttttttctctcttatataaattgttttgttcgaaatcaagaaacaaaacat--------aaaGCACTCAGAATTCTTGTAATATTTCATCACCTTGGCTTCTTTCTTCTATTCGCTGCCTGAAGTGTGTTGTATCTCGGCCGACGTCGCTTCTTTCGTGCAAGTTCTTGTTGGccaatctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       237012 265 +   783054 gaaaaaaagaaaatcaatatg-aaaaagtgtaaCAT---------GATGGGCACTTTGTCAAC---AATTGAAGAAAGCATCACA---------------------------------------CTAGtatgtttttctctttt-tttctcatatgaATATTTTCGTggg----cgagaaaaaaaagtttttcgttgAAAGCATTCCAAACTTATGAAACATTGCATCACCTTGGCTTTTTCTGCTTGTTTGATGACTGAAGTGTGTTGTATCTCGGCCGACgtcgtttttttctagagagcTCCCGTTGtccgatctgaaa
i caePb3.Scfld02_62     I 295 I 205
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I

a score=273.000000
s ce10.chrX              1044634 3 + 17718866 TAT
s caeRem4.Crem_Contig24   745976 3 -  1162296 tat
i caeRem4.Crem_Contig24 C 0 I 44
e caePb3.Scfld02_62       237277 205 +   783054 I
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I

a score=0.000000
s ce10.chrX              1044637 782 + 17718866  
e caePb3.Scfld02_62       237277 205 +   783054 I
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I
e caeRem4.Crem_Contig24   745979  44 -  1162296 I

a score=935.000000
s ce10.chrX              1045419 26 + 17718866 TGTTACTTTTCACTCGAAAAAACAAA
s caePb3.Scfld02_62       237482 25 +   783054 TGTTATTCCcta-tcgagaaaaaaaa
i caePb3.Scfld02_62     I 205 C 0
e cb4.chrX              21400449 501 - 21540570 I
e caeSp111.Scaffold548     25361 926 -    67506 I
e caeRem4.Crem_Contig24   745979 44 -  1162296 I

a score=-405.000000
s ce10.chrX              1045445 3 + 17718866 AAA-
s cb4.chrX              21400950 3 - 21540570 -AAT
i cb4.chrX              I 501 C 0
s caePb3.Scfld02_62       237507 3 +   783054 -aac
i caePb3.Scfld02_62     C 0 I 15
e caeSp111.Scaffold548     25361 926 -    67506 I
e caeRem4.Crem_Contig24   745979 44 -  1162296 I

a score=-314.000000
s ce10.chrX              1045448 622 + 17718866  
s cb4.chrX              21400953 436 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   746023 799 -  1162296  
i caeRem4.Crem_Contig24 I 44 C 0
s caeSp111.Scaffold548     26287 467 -    67506  
i caeSp111.Scaffold548  I 926 I 3
s caePb3.Scfld02_62       237525 554 +   783054  
i caePb3.Scfld02_62     I 15 I 31

a score=-8441.000000
s ce10.chrX              1046070 36 + 17718866 ------------TT------TAAACTCAGCAAAACTTCACACTTTCTT----ACATAA----
s cb4.chrX              21401389 34 - 21540570 T----------ATGACA---CAAGCTCGGT-----------TTTTCTT----ACTCCCGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   746822 47 -  1162296 ttttttcttaaattaaa---TGAAGACAGT--------ACATATTAAT----ACTTACAACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     26757 52 -    67506 ----tttgaacGTTAGAAGCTAAAAACGTTGA------ACGTTTTGACAAAGACTTACATTA
i caeSp111.Scaffold548  I 3 C 0
e caePb3.Scfld02_62       238079 31 +   783054 I

a score=45911.000000
s ce10.chrX              1046106 72 + 17718866 ACTTCACTGCTAGTATCCATGTCTAATGGATCCTGATCGAACGTGTATGGCATGTCGGTTCCAGACATTTTT
s cb4.chrX              21401423 72 - 21540570 ACTTCACTACTAGTGTCCATTTCCAAAGGATCTTGATCGAATGTGTATGGCAAATCGGTTCCCGACATTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   746869 72 -  1162296 ACTTCACTACTTGTGTCCATGTCTAATGGGTCTTGATCGAAAGTGTAGGGCATGTCGGTTCCAGACATTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     26809 72 -    67506 ACTTCATCACTGATATCCGTTTCTAATGGGTCTTGATCAAATGTGTAGGGCATATCAGTCCCTGACATTTTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       238110 72 +   783054 acctcATGACTAGAGTCCATGTCCAGGGGGTCTTGGTCAAATGTGTAGGGCATATCGGTCCCGGACATTTTG
i caePb3.Scfld02_62     I 31 C 0

a score=1707.000000
s ce10.chrX              1046178 8 + 17718866 GAGCATTT
s cb4.chrX              21401495 8 - 21540570 TATCATTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     26881 8 -    67506 TGTCATtt
i caeSp111.Scaffold548  C 0 I 2237
s caePb3.Scfld02_62       238182 8 +   783054 TCTCATTT
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   746941 0 -  1162296 C

a score=329.000000
s ce10.chrX              1046186 2 + 17718866 AG
s cb4.chrX              21401503 2 - 21540570 AG
i cb4.chrX              C 0 I 87
s caePb3.Scfld02_62       238190 2 +   783054 GG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   746941 0 -  1162296 C

a score=609.000000
s ce10.chrX              1046188 90 + 17718866 TTGTTGGTTGTGTTTCTGGAAAATCTGCAGGTTAGAATTTTCGAGAGGGAAA-AAGTTGGAGAAAAAAATTGCAGAGAAATTGAAGATTTT
s caePb3.Scfld02_62       238192 72 +   783054 --ATTG---------------ACTCTGCAAAT--aaatcttagaaaaaaaaacaaggtgaAAAAGAACAGGGCAAGTGAGTCTAAtatatt
i caePb3.Scfld02_62     C 0 I 1877
e cb4.chrX              21401505 87 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   746941  0 -  1162296 C

a score=0.000000
s ce10.chrX              1046278 21 + 17718866 AGGAACACAATTCCACATCAG
e caePb3.Scfld02_62       238264 1877 +   783054 I
e cb4.chrX              21401505 87 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   746941  0 -  1162296 C

a score=-2316.000000
s ce10.chrX              1046299 245 + 17718866 ATTTGTTTTCAATATGGTCGGGATGAGTACGTTTTCAGAATTTAGAAATTTAATATAGTCTGTAAATTTTATTTTTCACCCGAAATCTTCGCACTTATCTCTGCAAATCACAACTGTTCCAAAGATATTGCTCAAAAAGTATTCATTTTGAAAAAACATTTCCTTCGAAAATTCAAAAAAACGATTCAAAACTACCGCTCAATAAAAAAACAAGGAGACATGA---------------ATACGCCGCTAAATAGTTGTGT
s caeRem4.Crem_Contig24   746941 128 -  1162296 ACTTGTTCTCATTGAGG----------------TTCA-------------------AGtct-------------------------------------------------------------aaatat-----aaaaaatatac----taaaaagagatt------gggaggtaaaaaaaatga-------------------agaaaaataaaagaacgtGAGGTTTCCAACTAAACAGACACATACAAATAG--GTGA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       238264 1877 +   783054 I
e cb4.chrX              21401505  87 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=13845.000000
s ce10.chrX              1046544 144 + 17718866 GTGTAACCATAAATCGATTATTTTTGTCTAATCGAGACTGTCTTATCGGGGCACACAAACACCCAAGGACAAACAGGCACAATTAGAGATAATAATTAAT-GAGCACAATGTAGTAGAT---GTCTGATAGAAGTCACAAACTAGAAT
s cb4.chrX              21401592 134 - 21540570 GTCTCGCTATGAATCGATTGTTTTTGTCTGATCAACGTTGTCTTATCA----------ATGGCCGCATGCACACACGCACAAAGGAAAAT-GTGTGTATGTGCGCACAATGTACTTTAT---CTCCGAAACAAGTCATAAACTATAAT
i cb4.chrX              I 87 I 819
s caeRem4.Crem_Contig24   747069 129 -  1162296 GAGTCACTATaaatcgattatttttgtCTAATCAACGCTGTCTTATCA------------------GTGCACAACTGCACAATTGAAGATAATAATTATG-GCACACAATGTATAGTACGAGGTCTGATACAAGTCACACACTAGACT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       238264 1877 +   783054 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=872.000000
s ce10.chrX              1046688 49 + 17718866 AGCAAAAAGTACACGGTCATGCAAATGCGGTATTTTAACGTGAATTTTT
s caeRem4.Crem_Contig24   747198 45 -  1162296 --CATAAACTAGAAGATTATg--gtcacagttttttttcaggaattttt
i caeRem4.Crem_Contig24 C 0 I 1492
e caePb3.Scfld02_62       238264 1877 +   783054 I
e cb4.chrX              21401726 819 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=0.000000
s ce10.chrX              1046737 4427 + 17718866  
e caePb3.Scfld02_62       238264 1877 +   783054 I
e cb4.chrX              21401726  819 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   747243 1492 -  1162296 I

a score=817.000000
s ce10.chrX              1051164 35 + 17718866 TGTCAAAATAACTTTTGGCACTGATTAATTAT---CAT
s caeRem4.Crem_Contig24   748735 38 -  1162296 TGCCACCAGAATCCATTGAACTGATTCATTATATTCAT
i caeRem4.Crem_Contig24 I 1492 C 0
e caePb3.Scfld02_62       238264 1877 +   783054 I
e cb4.chrX              21401726 819 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=-934.000000
s ce10.chrX              1051199 23 + 17718866 ------------------CTGTCAGTCTCTGCG---TCTCTCAA
s cb4.chrX              21402545 26 - 21540570 ------------------ctctcattttctatgatctctcattt
i cb4.chrX              I 819 C 0
s caeRem4.Crem_Contig24   748773 39 -  1162296 TTGTTAGCatctttatcctcctctcttttta-----tctcatct
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       238264 1877 +   783054 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=21650.000000
s ce10.chrX              1051222 200 + 17718866 TCCATTCTTCTTCACACCTCGAAATCTCACTCTCTCATTATTCTTGTCGAGCCGCGGAGCCTCTCGCCGTTTTTT-TCCGTT----------------------------TGTCCCCCCGC-------GCTGCCGTGTCTCATTGCTT-GG----GCTCCTGAGTTGCTCCGTGAAA----ATGAGAGATAGAGAA-AGGAGGCAGATATACTCTATCGAAT-AAAATCTGAATGATGTCGAGAGAA
s cb4.chrX              21402571 192 - 21540570 tcttcttatcttcACACCTAAAAATCTTAGCTGCTAC-------TCCCTTCCA----AAAGTCTTGCTGTTACTCGCTTGTC----------------------------CCATTTTCTGTTGGCCGCGCTGTGTCGTCTCACAGCTT-GG----ACTGCT---------CAAGACACACACGAGGACTTTGAGAG-GAGTCTCTCATATACTCTATCGAAT-AAAATCTAAATGATGCTGGGACAA
i cb4.chrX              C 0 I 763
s caeRem4.Crem_Contig24   748812 178 -  1162296 tctctccttcttcacacctcaagatctt--tttctcc-------ttccgtGCC----AAACTCTTGCCTTTTCTT-CTTGTC-----------------CGTTG-----TCGTTTTTCCGTTGG----GCCGCGCTGTCTCAAAGCTCAAG----GCTGCT---------CACGACA---------------AGAGAAAGAGTCTCATATACTCTATCGAAT-AAAATCTGAATGATGTTGAGGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       240141 210 +   783054 tctcttctctttcacacctcaagatcct--tttctcctcctctttcctATGCC----AAAGTTTAGctttctcct-ctcttctccCCTATTTCTTGCTCCGTTGTCGTTTCGTTCTTCCGTGAATC--CGCGCGTTGTCTCAAAACtc-agttcttcttct---------cacgACA-----------------CG-AAGAGTCTCATATACTCTATcgaataaaaatctgaatgatGTTGAGAGAG
i caePb3.Scfld02_62     I 1877 C 0
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=9812.000000
s ce10.chrX              1051422 126 + 17718866 ACTTGTGGGAGACAGGAGCCAAGGGGGGGGGGTCTGGGGATTGGC--AAAAAGTTGTGTTCTACGC--TGCGCAGGTTTCCAGCTCTTCCTCTCATTGATCTTAGTTTCAAGTTTG-----CACATGAAAAGTAC
s caeRem4.Crem_Contig24   748990 110 -  1162296 ------AGGAGGTGGGGG--AACAGGGAgggg---gggggATGGC--AAAAAGTTGTGTTCTTCTCGGCGCGCAGGTTCCCA-------CTCTCATTGATCTTAGTTTCAAGTGCG-----CTCATGGATTGCAC
i caeRem4.Crem_Contig24 C 0 I 344
s caePb3.Scfld02_62       240351  95 +   783054 --------------------AATAAAAAGGAG---GAATGATGGAGGAAAAAGTTGTGTTCTC-----GGCGCAGGTTCCCA-------CTCTCATTGATCTTAGTTTCAAGTGTGTTCGtctcatggat-----
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21402763 763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=578.000000
s ce10.chrX              1051548 23 + 17718866 ATTCCTTTGTTG-ATGTACTTTTT
s caePb3.Scfld02_62       240446 24 +   783054 ttttttttgtcgcaGGTAATCTTT
i caePb3.Scfld02_62     C 0 I 597
e cb4.chrX              21402763 763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   749100 344 -  1162296 I

a score=0.000000
s ce10.chrX              1051571 1417 + 17718866  
e caePb3.Scfld02_62       240470  597 +   783054 I
e cb4.chrX              21402763  763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   749100  344 -  1162296 I

a score=8940.000000
s ce10.chrX              1052988 219 + 17718866 ATCGCCAGAAAGTATCTATTTTGCACTTTCATTCATCCCTCAACACTTT-----GACCTC-CCTTCAGGTCAAATTGCGTTTATTTTCATTTTGAAGACATTGAAACCTAGGCTAAACTCTCTCAGGGGAGCATTTCCCATGTC-TTCCTCCTTTCCGACATCTGTTTCAACCCGACTTCAAAATGAGAACCAGACTT-----TTTACACGTCATTCCCTCTCATTTTCTT
s caeRem4.Crem_Contig24   749444 217 -  1162296 ATCTCAAAAAAGTAG------TGTGCTCTCTCCCACCC----ACACATTCGACTGACCTTGCCTTTAGGTCAAATTGCGTTTATTCTCATTTCCAAGACATCTAAACCTA-GCTGAATTCTCTCTGGGGAGC--TTCACatgtctttctttctttccgaCATCTGTTT-AAaccgatttgaaaatgagaaccAGACTTTTTCCTTTCCTCGTCCTTGtcgtttattttttt
i caeRem4.Crem_Contig24 I 344 I 216
e caePb3.Scfld02_62       240470 597 +   783054 I
e cb4.chrX              21402763 763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I

a score=0.000000
s ce10.chrX              1053207 758 + 17718866  
e caePb3.Scfld02_62       240470 597 +   783054 I
e cb4.chrX              21402763 763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   749661 216 -  1162296 I

a score=557.000000
s ce10.chrX              1053965 169 + 17718866 ATATCTTTTTTTTCTCAACTTTCAATTTTCCTATCTACCCATCTCACTTTTTGGTTGTAATT------------CTCAAT---AATAA-----ATGTTCATCCTCACAACCAATTCATCATTATATAAATAGATTGGC--AACAAGAAGACAACAA--------------CGTGACCAAG-TGTTAATGAAAAAATAAAAAAGAAG
s caePb3.Scfld02_62       241067 191 +   783054 atttcttcctcttctca--tttGAGTCCTACTTTTacacaattcttttttttaattatattTTATGTATTTCCTCTCAATCCTGATAATCCTCCTATCCATCTTTGCATCCTAatcctcttcttttcagtGGCTGGACCGagataaaagaaaacaaacaaccGATGTTTGCATGACCAATCTATTGATAAAAA-------------
i caePb3.Scfld02_62     I 597 C 0
e cb4.chrX              21402763 763 - 21540570 I
e caeSp111.Scaffold548     26889 2237 -    67506 I
e caeRem4.Crem_Contig24   749661 216 -  1162296 I

a score=393.000000
s ce10.chrX              1054134 24 + 17718866 AAGAAGCAACAACTGTTCGGATAT
s caeSp111.Scaffold548     29126 22 -    67506 aaaaaggaaCAGCTGTTTGAG--T
i caeSp111.Scaffold548  I 2237 C 0
s caePb3.Scfld02_62       241258 12 +   783054 ---------CAGTTGTtccgg---
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21402763 763 - 21540570 I
e caeRem4.Crem_Contig24   749661 216 -  1162296 I

a score=-2657.000000
s ce10.chrX              1054158 42 + 17718866 ----AAGATAAGCAAA-CGAATCAATCACAGTGTGAAAAGGAGCGGG
s caeRem4.Crem_Contig24   749877 34 -  1162296 ----aagaggagcaAT-CAGATCAAtcaca-----aacaaaaac---
i caeRem4.Crem_Contig24 I 216 C 0
s caeSp111.Scaffold548     29148 29 -    67506 TGGATACTGAGCTGGGGTTAATCAATCAC------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       241270 28 +   783054 -agaaaaagaagcaacaCTAATCAATCAT------------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21402763 763 - 21540570 I

a score=57913.000000
s ce10.chrX              1054200 111 + 17718866 ATCGGGGAAT---ATGGGAAAATCGCAAAGCAAAGTGCAGACGAAAAAGAAGGCAAACAAGAAATTAACGACGGAAGAGGTACAAACACTAGAACAAGTCACTTATTGTAAGTT
s cb4.chrX              21403526 113 - 21540570 ATCAGGCAATATCATGGGGATATCGCACAGCAAAACGCAGACAAAGAAGAAAGCAAATAAAAAACTAACACCAGAAGAGTTGCAAACGCTTGAAAGTGCGACATACtgtaagt-
i cb4.chrX              I 763 C 0
s caeRem4.Crem_Contig24   749911 101 -  1162296 -------------atgggaaagtcgcatagcaaagtgcagacgaaaaagcgtgcaaacaaaaaactgacaCCGGAGGAGGTACAGGCACTCGAGAACGTTACATACTGTGAGtt
i caeRem4.Crem_Contig24 C 0 I 29
s caeSp111.Scaffold548     29177 110 -    67506 -TAAGAAAAT---ATGGGTAAATCACAGAGCAAGGtgcaaacaaaaaagaaagcaaaTAAGAAATTAACACCAGAGGAGATACAACAACTGGAAAATGTCACATATTGTGAGTT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       241298 110 +   783054 -Taagggaaa---atgggaaaatcgCAGAGCAAGGtgcagacaaaaaagaaggcaAACAAGAAATTAACACCGGAGGAATTACAACAGTTGGAGACTGTGAcatattgtgagtt
i caePb3.Scfld02_62     C 0 C 0

a score=-6768.000000
s ce10.chrX              1054311 29 + 17718866 TGATTAGGAAAATGTTGAAAGTGGTTGTG-------------
s cb4.chrX              21403639  4 - 21540570 ---------------------------tgt----------t-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     29287 20 -    67506 ----------------------TCTGTTGTGAATAGATtgtc
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       241408 10 +   783054 ----------------------ttttgtgt----------tt
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   750012 29 -  1162296 I

a score=-39572.000000
s ce10.chrX              1054340 101 + 17718866 --------------------TTTTATTTTTCAACGGTATGGAAACCTGTAAAAAATTTTTCC----------------ATGAGCCAGTTAAAAAAAAGAGTCTTAATATCTTAAAAAGT-------------------------TTTTATGATAGTCTAAAA----------------
s cb4.chrX              21403643  13 - 21540570 -----------------tttttccatt--------------------------------------------------------------------------------------------------------------------------------------------gtt--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750041 128 -  1162296 ttttagtttATAACGATTCCTCCCATTTTT----GTTATAATAA------------ACTCCG----------------ATAAGCTAACCaagaagaaaa----------tcaagaaatcagaGCTCATTAGAATGACGCTACTGTTTCCAGTTCGCATGACTAGTTGATT--------
i caeRem4.Crem_Contig24 I 29 C 0
s caeSp111.Scaffold548     29307 114 -    67506 -----tttt--------gatttttattttt----gttgtgaaaa--------cgaaatttcaCACAAAACTAAATTATATTTGCCTGTGCATTAGGAAA----------CTATGAGAAT-------------------------TTT---ATTAGCCGAGTTTGTC-GCTGTCAAAAA
i caeSp111.Scaffold548  C 0 I 122
s caePb3.Scfld02_62       241418 100 +   783054 -----gttt--------gCTGTTCAGTGTT----GTTACATAGAGATTT-ATTGGTTTGTCA----------------AGTTGGTTCGGAtcaaaacaa----------gtgaaaaaac-------------------------cTTCCGATTCACCTGTTTTCTT-GTT--------
i caePb3.Scfld02_62     C 0 C 0

a score=-18550.000000
s ce10.chrX              1054441 113 + 17718866 ---TTAACTAACAAGTTCCAATTAGCCAGGTAAACCTGAACCAACTATACTTTGTAGTTAAACTTAATTGACTT--ATCGCAATCCTTGATTAATATTGGATGCATATTTTCA-----------------------------------GTAAA
s cb4.chrX              21403656  38 - 21540570 ---ttaAACC---------------------------------------------------------ATGATTA-TGTAA-------------------AAGTTGTATTTTCA-----------------------------------ATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750169 134 -  1162296 ---TTAAACCACA--TTCTACATCGATGAACATCG---AACCACtttttttACGCTTTAGAATTCAAATGATTA--GTAGCA---------AAACTTTTAAGTTGTAATTCAAGGGGTTTATGCACAAAAgttcgttcattttttgatataat
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       241518 104 +   783054 CCGCCTGATCACT--ATCTATCAAAAAGATCAGAGC--agacttctcttttttgttgttgaaaacatATGTCGAAAATAACAG--------AGATTGGGAGAACATATTCTGG-----------------------------------AAA--
i caePb3.Scfld02_62     C 0 I 95
e caeSp111.Scaffold548     29421 122 -    67506 I

a score=-6272.000000
s ce10.chrX              1054554 59 + 17718866 ATTTTTCATAGTTTAGAGA---AAACCATCAA--GTAAA----------------------------------------TGTGATTAACCCTAATTAATAAATG
s cb4.chrX              21403694 27 - 21540570 ACATTTTA---------GA---ACTATATCAACTGTTAG-----------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750303 98 -  1162296 gTATTTCA----CTACCGAGTCACTAAATAAATTGTAAAATGTAAAAGCCGGTTAATCACAATTCTCACCCAACTAGATTGTGCTACTTCCTACTTA--CAacc
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       241622 95 +   783054 I
e caeSp111.Scaffold548     29421 122 -    67506 I

a score=-1566.000000
s ce10.chrX              1054613 5 + 17718866 TTCTT-
s cb4.chrX              21403721 2 - 21540570 ---AT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750401 5 -  1162296 atcat-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       241717 5 +   783054 -ttttt
i caePb3.Scfld02_62     I 95 C 0
e caeSp111.Scaffold548     29421 122 -    67506 I

a score=117184.000000
s ce10.chrX              1054618 176 + 17718866 CTTTCAGTCACAAAAAAGGAGCTCAAAAAATGGTACAAAGATTTTGTGAGAGACTGTCCCAGTGGAGAACTCAAGATGGAAGAATTTCAAGGAATCTACAAGCAGTTCTTCCCAAATGGTGACCCATCAAAGTTTGCTGCTTTTGTGTTCAATGTATTTGATGACAATCACGTGAG
s cb4.chrX              21403723 176 - 21540570 TTTTCAGTCTCCCgaaaagaactgaaaaaatggtaCAAGGATTTTGTTCGCGACTGCCCGAGTggtgagctgaaaatggaagaatTTCAAGGAATTTACAAACAGTTTTTCCCCAACGGAGATCCATCAAAGTTTGcgtcatttgttttcaatgttttcgatGATAATCATGCAag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750406 176 -  1162296 ttttcagtctctcgcaaagaactcaaaaaatggtaCAAAGATTTTGTACGAGATTGTCCAAGTGGAGAATTAAAAATGGATGAGTTTCAAGGAATCTACAAACAGTTTTTCCCCAACGGCGATCCCTCGAAATTTGCCGCTTTTGTATTCAACGTCTTTGATGATAATCATGTAAG
i caeRem4.Crem_Contig24 C 0 I 11
s caeSp111.Scaffold548     29543 176 -    67506 TTTACAGTTTCCCGCAaggaactcaaaaaatggtaCAAAGATTTTGTGCGAGACTGTCCTAGTGGtgaattgaagaaggaagaatTCCAAGGAATTTACAAACAGTTCTTCCCTAATGGGGACCCATCAAAATTTgcctcttttgttttcaatgttttcgatGATAATCATGTAAG
i caeSp111.Scaffold548  I 122 C 0
s caePb3.Scfld02_62       241722 176 +   783054 tttgcagtttctcgaaaagaattgaaaaaatggtacAAAGACTTCGTGCGAGATTGTCCAAGTGGGGAGTTGAAAATGGAGGAGTTCCAAGGCATTTACAAGCAGTTCTTCCCAAATGGAGACCCTTCGAAGTTCGCTTCCTTTGTGTTCAACGTCTTTGACGATAATCACGTGAG
i caePb3.Scfld02_62     C 0 I 35

a score=302.000000
s ce10.chrX              1054794 2 + 17718866 CT
s cb4.chrX              21403899 2 - 21540570 tt
i cb4.chrX              C 0 I 30
s caeSp111.Scaffold548     29719 2 -    67506 TT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       241898 35 +   783054 I
e caeRem4.Crem_Contig24   750582 11 -  1162296 I

a score=411.000000
s ce10.chrX              1054796 18 + 17718866 -----TTTTCAAT--TCGAAAAAAA
s caeSp111.Scaffold548     29721 25 -    67506 CAAACTTTTAAATGGTGGAacaaaa
i caeSp111.Scaffold548  C 0 I 13
e caePb3.Scfld02_62       241898 35 +   783054 I
e cb4.chrX              21403901 30 - 21540570 I
e caeRem4.Crem_Contig24   750582 11 -  1162296 I

a score=0.000000
s ce10.chrX              1054814 900 + 17718866  
e caePb3.Scfld02_62       241898  35 +   783054 I
e cb4.chrX              21403901  30 - 21540570 I
e caeSp111.Scaffold548     29746  13 -    67506 I
e caeRem4.Crem_Contig24   750582  11 -  1162296 I

a score=103.000000
s ce10.chrX              1055714 18 + 17718866 AGACTCCCACTCCGATAC
s caeRem4.Crem_Contig24   750593 17 -  1162296 GGGTTCACAC-CTAACAT
i caeRem4.Crem_Contig24 I 11 C 0
e caePb3.Scfld02_62       241898 35 +   783054 I
e cb4.chrX              21403901 30 - 21540570 I
e caeSp111.Scaffold548     29746 13 -    67506 I

a score=-112.000000
s ce10.chrX              1055732 4 + 17718866 ATAC
s cb4.chrX              21403931 4 - 21540570 ATGA
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig24   750610 4 -  1162296 TTGT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       241898 35 +   783054 I
e caeSp111.Scaffold548     29746 13 -    67506 I

a score=106434.000000
s ce10.chrX              1055736 232 + 17718866 TTTCAGGATGGTCACATTTCCTTCAGTGAATTCATTGCTGCATTGTCAATCACATCCCGTGGCACATTAGACGAGAAGCTAGATTGTAA------------GTCGAAAAAAAAAATGCAAAAAGAGACATTATTGAAAATGTATGAAAGTCACTTTGCAGGGGCATTCTCACTATACGACGTGGATAAAGACGGCTTTATTACAAAGGATGAAATGGCTGATATTGTCGATGCAATTTATAG----GT
s cb4.chrX              21403935 215 - 21540570 TTTCAGGATGGTCATATTTCCTTCAGCGAGTTCATTGCAGCATTATCCATCACGTCGCGTGGAACACTAGACGAAAAACTGGATTGTAA----------------AGAAATCAATCAC-------------GctattcatctgaaaaattttaattccagGGGCGTTCTCGCTGTACGATGTAGACAAAGATGGATTCATTACCAAAGACGAGATGGCAGACATTGTTGATGCAATTTATAG----GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   750614 228 -  1162296 TTTTAGGACGGTCACATTTCCTTCAGCGAGTTTATCGCGGCTCTTTCAATCACGTCTCGCGGAACATTGGACGAAAAACTAGATTGTAA------TTGCTcaccgagaaaaaaaatat--------------ctttGAGATTCAAACATTTGTATTCCAGGGGCGTTCTCACTATACGACGTGGACAAAGATGGGTTTATTACAAAAGATGAGATGGCGGATATTGTGGATGCAATTTATAGGTTtgt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     29759 213 -    67506 ttccaggATGGACACATTTCATTCAGCGAATTTATTGCAGCTCTTTCAATCACATCTAGAGGAACATTAGACGAAAAATTAGATTgtaatttaaatttc------aagtCATGAATAg--------------ct----------aaaatt-atatttcaggGGCATTTTCATTGTACGATGTGGACAAAGACGGTTTCATCAGAAAGGATGAGATGGCGGATATTGTGGATGCTATTTACAG----GT
i caeSp111.Scaffold548  I 13 I 55
s caePb3.Scfld02_62       241933 217 +   783054 ttccAGGACGGTCACATATCCTTCAGCGAATTTATTGCTGCGCTATCCATCACATCCCGAGGAACATtggatgaaaaattggattgtaatttagtttttttctagaaaaaacgaA-AG--------------CT----------AATGTT--CATTCCAGGGGCCTTCTCACTATACGATGTAGACAAAGACGGATTCATAACAAAAGACGAAATGGCAGACATTGTAGATGCAATTTATAG----GT
i caePb3.Scfld02_62     I 35 C 0

a score=-4643.000000
s ce10.chrX              1055968 32 + 17718866 GTGATATGTAGCAAATCTTAATGTGCAGAAAA--
s cb4.chrX              21404150 31 - 21540570 ---ATCAAGATAACAAAACAATATTGTCACATta
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig24   750842 31 -  1162296 ---ttagtgaaaaaaaatcaaaacttcaacAATA
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62       242150 17 +   783054 -----GGGCAGAATATATTAAT------------
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     29972 55 -    67506 I

a score=0.000000
s ce10.chrX              1056000 1 + 17718866 A
e caePb3.Scfld02_62       242167 0 +   783054 C
e cb4.chrX              21404181 12 - 21540570 I
e caeSp111.Scaffold548     29972 55 -    67506 I
e caeRem4.Crem_Contig24   750873 1 -  1162296 I

a score=-19451.000000
s ce10.chrX             1056001 265 + 17718866 TCTAATACACTGTGAGAGAAAAAAAATTAGAA---GCCTGCAATAATTTCAAAAATTTTGGTTTAAAGGAATT----TTTATTTGTATTTTTGTATT--------TCAAAAATTGTTCAAAAAAGTTTCTTTTTAAAATTGGTTAACAGCTTGAAATTGGAGTTTCCGCGCA------------------ATGACTTCAAATAAAT--------------------------------------------------------------TCTCAAACTTATTTTTTAAAGTTTATGTTTGGTGTTTGGAAAAAAATTAAAAAATGA-------------------GCCAAAAATGAATCATGTTAAAGGGCAAAAATACT
s cb4.chrX               195378 363 + 21540570 GAGAACACGCCG-----GAAAAAAGAGTTGATCGCATTTTTAGAATGATGGACAAGGTTGGTATAATGGAGTTTAGGTTCACCGTGATTTATTCACTTATCCTAATGAAAAGCTAAATAgacttgtttttcttt-----------tttccttaatCCCGAGGGTGCTGAGAAAACAAGCGcagcatttttttgaattcaatgaaatacaattttcctgttttggttatttgaaaaaataccaaTTCACATCACAGGCATATGTGTCTACCTTTGAACTATGTTTTAAAACTGTTAATTGCTGTAATAAtcagatttgaaaatcaattttcttcaagCAGATGAGTTTCATAATAGATTAtgaaaaagcttcaaaaaact
i cb4.chrX              I 38853 I 151
s caePb3.Scfld02_62      242167 107 +   783054 AATCATATGacg-----------------------actttttgaatttcgaaaaaatt-------------------ttcatc----------------------tggaaaatttgatca--------------------------------aattctAATGTTATTGAGCA-------------------------------------------------------------------------------------------------------------------------TAATTGCTTCCATAGT-----------------------------------TTTCATA-------------------CCAAGAGC-
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548    29972  55 -    67506 I
e caeRem4.Crem_Contig24  750873   1 -  1162296 I

a score=-2446.000000
s ce10.chrX             1056266 127 + 17718866 GAAATTCTGTAAATTTTCAGTAACTCTATGCAATAAAAAATTCATCAGATTTTGCAAAGGGTTTTCTCGCACTCAACTAAATTATCCCGTTTTTCTCACTGTCATAAATATAAGTTCCGACTCTCAC
s caePb3.Scfld02_62      242274  34 +   783054 ------------ATTTTC--------------CTAAAAAACT------AGTTTGAAAGTAG-----------------------------------------cataa--------------------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX               195741 151 + 21540570 I
e caeSp111.Scaffold548    29972  55 -    67506 I
e caeRem4.Crem_Contig24  750873   1 -  1162296 I

a score=0.000000
s ce10.chrX             1056393 39 + 17718866 AGAGCGAGTTTCAGTAATTTTTCAATACCCTCTACTCCT
e caePb3.Scfld02_62      242308  0 +   783054 C
e cb4.chrX               195741 151 + 21540570 I
e caeSp111.Scaffold548    29972 55 -    67506 I
e caeRem4.Crem_Contig24  750873  1 -  1162296 I

a score=-1770.000000
s ce10.chrX             1056432 7 + 17718866 TGAAAAT------
s cb4.chrX               195892 2 + 21540570 -----tt------
i cb4.chrX              I 151 C 0
s caeSp111.Scaffold548    30027 7 -    67506 ------tgatacT
i caeSp111.Scaffold548  I 55 C 0
e caePb3.Scfld02_62      242308 0 +   783054 C
e caeRem4.Crem_Contig24  750873 1 -  1162296 I

a score=-949.000000
s ce10.chrX             1056439 7 + 17718866 TTATAAT--
s cb4.chrX               195894 7 + 21540570 gtagaat--
i cb4.chrX              C 0 n 0
s caeRem4.Crem_Contig24  750874 7 -  1162296 TTGTAAT--
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold548    30034 9 -    67506 CTATAATAT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      242308 6 +   783054 ---caaaat
i caePb3.Scfld02_62     C 0 C 0

a score=100507.000000
s ce10.chrX              1056446 241 + 17718866 T--TTCAGCATGATTGGAAATATGTTGGAACTCCCAAAAGATGAGGACACGCCTCAAAAGCGAGTGGAAAAAATATTCACAAATATGGACAGGGTTC-----------GGaatttaaaattatatttttttGTCCACTCATA-------ATTTTTTTTT--TTCAGAACCTAGACGGTCAATTGACAAGAGAAGAGTTCAAGGAAGGCTCAAAAGCAGACCCTTGGATTGTACAAGCGCTCACGATGGACATTTCAAGCTGA-T--------------------
s cb4.chrX              21404193 252 - 21540570 t--tccagTATGATTGGTAACATGCTGGAATTGCCAAAAGACGAAGATACTCCTCAAAAACGcgttgagaaaattttcacaaatatgGACAAGGTAAATCAGTCAAACGGA--TTCAACTca-----tttgttcaat---------------------t--ttcagaatctggatGGTCAGCTGACTAGAGAAGAATTCAAGGAAGGCTCCAAAGCAGATCCATGGATTGTCCAGGCTCTTACCATGGATATATCAAACTGACCCAACTTCTctgtttcaaact
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24   750881 252 -  1162296 ---TACAGTATGATTGGAAACATGTTGGAACTCCCGAAAGATGAAGACACACCACAGAAACGTGTAGAAAAGATTTTCACCAACATGGATAAGGTTA-----------GAA--TTCTATTC-------TTGCTAAATTCTTA------TCCGAACATGT--TCCAGAATCTTGATGGGCAACTAACTAGAGAAGAATTCAAGGAAGGCTCGAAAGCAGACCCGTGGATTGTTCAAGCTCTCACTATGGACATCTCCAGTTAA-TAAATTCCTAATGTTCCTCCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     30043 230 -    67506 TACTTCAGTATGATTGGAAACATGTTGGAACTTCCAAAAGATGAAGACACTCCACAAAAACGGGTTGAAAAAATCTTCACAAACATGGATAAGGTTA-----------G-----TGAGTGA-------GTGAGGAAAAAATA----------CATGTTTTGTTTAGAATCTTGATGGTCAATTGACGAGAGATGAATTTAAAGAAGGCTCAAAAGCTGATCCATGGATTGTTCAAGCGCTCACAATGGATATTTCCAGCTAA-T--------------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       242314 239 +   783054 t--ttcagcatgatcGGAAACATGCTAGAACTTCCAAAAGACGAAGACACTCCTCAAAAGCGTGTGGAAAAGATTTTCACAAATATGGATAAggttt-----------gat--ttcaaaat-------ttcagaaaaccataGAGACCCTTGCTTGTAT--TTCAGAACCTTGATGGCCAACTAACTCGGGAGGAGTTCAAAGAAGGATCAAAAGCAGATCCGTGGATTGTGCAAGCACTGACCATGGACATATCAAATTAA-T--------------------
i caePb3.Scfld02_62     C 0 I 571

a score=873.000000
s ce10.chrX              1056687 98 + 17718866 GTGA----------GATGAATGTGAACATTAAATGAGTAAAAGTATTATAAATTCGCCTGATATGTACACCGTATATCACAGATTTGCCTTTTCCTGCGATCCTCAT---T
s cb4.chrX              21404445 79 - 21540570 ttgagcc------gTATTATGATAACCA---------TGaaaaaaaCCCCTAT---CATTAT--------------TCACAGTTTTGCCGTTCCATGTGATCTTATTTGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   751133 96 -  1162296 ATGATCCCACAAAGTTTTAATGTTTCCAGT-----TTCTAAAGTATTATATAT---CTTAATGTAT----CAAATATCACAGATTTGCCGTTCCCTGTGATCTTCTT---T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     30273 71 -    67506 --------------TCTCAATGTCAAATCT-----ATTTAAA--------TAT---CACAATATAT-------ATATCACAGTTTTGCCATTATCTGtgatcttcat---t
i caeSp111.Scaffold548  C 0 I 40
e caePb3.Scfld02_62       242553 571 +   783054 I

a score=-840.000000
s ce10.chrX              1056785  8 + 17718866 GAATACGT----
s cb4.chrX              21404524 12 - 21540570 CTTTACATCCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   751229  8 -  1162296 CATTGCAC----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       242553 571 +   783054 I
e caeSp111.Scaffold548     30344 40 -    67506 I

a score=182.000000
s ce10.chrX              1056793 2 + 17718866 AA
s caeRem4.Crem_Contig24   751237 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 33
e caePb3.Scfld02_62       242553 571 +   783054 I
e cb4.chrX              21404536 0 - 21540570 C
e caeSp111.Scaffold548     30344 40 -    67506 I

a score=0.000000
s ce10.chrX              1056795 658 + 17718866  
e caePb3.Scfld02_62       242553 571 +   783054 I
e cb4.chrX              21404536   0 - 21540570 C
e caeSp111.Scaffold548     30344  40 -    67506 I
e caeRem4.Crem_Contig24   751239  33 -  1162296 I

a score=495.000000
s ce10.chrX              1057453 19 + 17718866 AAAATTTAATTTTTTTCTG
s cb4.chrX              21404536 19 - 21540570 AAGACGTGActtaattcta
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       242553 571 +   783054 I
e caeSp111.Scaffold548     30344 40 -    67506 I
e caeRem4.Crem_Contig24   751239 33 -  1162296 I

a score=198.000000
s ce10.chrX              1057472 11 + 17718866 ATACTTTCACA
s cb4.chrX              21404555  9 - 21540570 --aaattatta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   751272 11 -  1162296 ATAATTGAACA
i caeRem4.Crem_Contig24 I 33 C 0
e caePb3.Scfld02_62       242553 571 +   783054 I
e caeSp111.Scaffold548     30344 40 -    67506 I

a score=-2736.000000
s ce10.chrX              1057483 344 + 17718866 TAATAAATAACTGATTTATTCATGAATATATAAATGAAAAATAAGAAGAACTAGAGTTTCGTAAATTTTGAAAAAAAGTTCAGAAAATACATGATCGGGTTGAATGACAGTTGCAAATCGGAATTTGGGGGAAATTAGAGAGTTTTGTGTTT-TGTTTGGC-TGGTTTTTTT------------TTGTGCAAATCGAGAACGTTTAGGAAAGTATT---GGTAGGAT-----AAAGGCTATTTGAAAGA-----TAATTGTATG--------TATATAGACTTTGAATTAATACAAATGATTGATCTATTAATAATGCACTATCTGGGATCCAAATTTCAAAAGGTGCAGCATTTATAGAGAAAAAAAGGAAAATATGA
s cb4.chrX              21404564 233 - 21540570 cAATAAATAAATGCTTTATTCATAAAC-TGTGAACTAAAGATTAGACGAATGAAG-------AGTTATCGaaaaaaaGTGT---------------------AATGGCAATTGCAAATCGGAATTAAG---------------------TTTGTTTTTGGCGCGGTTTGAAAGAGTATGTCAGTGTGtgcaaatctcaaaaac--agGGAACAATT----------------Agag-------gaaagaaaaaggaatcGGGAG--------T-TGtacatt-----atcaaaaa------------------aatgag-------------------tagaaaaaaaagtct-----gaaa---------------aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   751283 261 -  1162296 TAATAAATAACTGATTTattga------------------atgagaagaaaaact-------aaatgtttgaaaaaagtat------tacAT-------TGAAATGACAGTTGCAAATCggaatttgg---------------------att-tttttggc-TGATTGGAGA------------GTGTGCAAATCGAGAACATTAAGGAAAGAATTGTAGTAAGG-------AAAG-------GAGGGAGAAAGAAATTATATGGCATAACat-tgaatattttgagatGAGAAAAGT-ATTGACATAGTG--AATGTG-------------------TATAAGtataatttttcatcgaaatt--------attatta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     30384 226 -    67506 TAATAAATAACTGATTTATAGa------------------ttaagagaaaaacta-------atatatcgggaaaaattat------tatatgA-----TTGAATGACAGTTGCAAATCGGAATTCGGAGTtgattcg----------tttt-gttttggC-TGATT-----------------GAGTgcaaattgagaaaatcaaagaaagaattttAGATGGGTTTTCATAAAGA----Ttaagagaaacagaaa-----ag--------t-tgtaaac------ataaaaaa-------------------------------------------------tttcttttttttttgggatc---------------
i caeSp111.Scaffold548  I 40 C 0
e caePb3.Scfld02_62       242553 571 +   783054 I

a score=193794.000000
s ce10.chrX              1057827 463 + 17718866 TTATTGGTCTTTTTTCATAAATGCTCCAAACATTTCCACAGGTACGGGGAAAACAATTGTAGAATTGTGCTCAGCTCTGAAAAAAATTGGATTAGCGATAGCTCGGTTCCTCTACGATTTTCCATAGTTTCAAAA----------ATTGGTACAATTCAAAGTTGGTGACT---------AATTCGAAATTCAATCCAAAAG-------------AGCACGCATCTCTCTTCTCACCGAAATTAAATTT--ATTCGAGAAGTGTGGCAACTTACGCAATGCTGTTGAGTGCTTGCAAGTGACGAAGCTGAAGAGCAACTGGGTTCGCTTGAATGACATCGGCCGCTTCTTTGAGAGCCCGTGACGCCTTCTGCTCTCCCTCGGCGGCGACAACTTTGGCTCGAGCTTCACGCGCGGCCTCGGCTTCGGCGGCCATGGCACGTGTGAGTTGTTGGGGGAGACGGATGTCCTTCACTTCCACACGTTCTACCTGTAATG
s cb4.chrX              21404797 374 - 21540570 ttattggtCTTTTTTCATGAAGGCTCCGAACATTTCTACTGGTACTGGGAAAACGATGGTCGAGTTGTGTTCAGCGCTGTAA--ATT----------------------------Gtgtttgattattttt----------------------------------------------------tcacaCAT---TCCAAAGT-----------------------TTTTATGCAGTG-TGTGTAGAAGT-------------GTATC-ACTTACGCGATGCTGTTGAGTGCCTGCAAGTGACGAAGCTGAAGAGCCACCGGATTGGCTTGAATGACATCAGCTGCTTCTTTGAGAGCGCGCGACGCTTTCTGTTCTCCTTCAGCTGCCACCACTTTGGCTCGAGCCTCTCGGGCAGCTTCGGCTTCGGCGGCCATAGCACGTGTAAGTTGTTGCGGGAGACGAATGTCTTTCACTTCGACACGTTCTACCTGTAACG
i cb4.chrX              C 0 I 209
s caeRem4.Crem_Contig24   751544 392 -  1162296 ttattggtCTTTTTTCATGAATGCTCCAAACATTTCCACTGGTACCGGGAAAACGATGGTTGAGTTGTGTTCAGCGCTGAAATGATC----------------------------AAATTATAGTATTTTTGGGT---------------------TTCAGTCTTGCAGCT----------AATCGCAAAC---GTAAAGAA-----------------------TTTCTTTAAATG------AAATTT-------------GTATC-ACTTACGCAATGCTGTTGAGTGCTTGCAAATGACGGAGCTGAAGAGCCACTGGGTTGGCTTGAATGACATCAGCGGCTTCTTTGAGAGCTCGCGACGCTTTCTGCTCTCCTTCGGCGGCGACGACTTTGGCACGAGCTTCACGGGCGGCCTCGGCTTCGGCGGCCATAGCACGAGTAAGTTGTTGCGGGAGACGGATGTCCTTCACTTCTACACGTTCTACCTGTAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     30610 357 -    67506 --attggtcttttttcatgaacGCTCCAAACATTTCCACTGGAACTGGGAAGACAATAGTCGAATTGTGTTCAGcgctgaaaacatt------------------------------------tttttcttaaaa-------------------------atattgTGGCT-------------------------CAAAAA---------------------------------TGGTATCTGAATTT-------------------ACTCACGCTATGCTGTTGAGAGCTTGCAAATGACGGAGTTGAAGAGCGACTGGGTTGGCTTGAATGACATCTGCGGCTTCTTTTAGAGCTCGAGACGCTTTCTGCTCTCCTTCAGCGGCAACGACTTTGGCACGAGCTTCACGAGCCGCTTCAGCTTCGGCGGCCATAGCACGAGTTAGTTGCTGCGGGAGGCGAATGTCTTTTACTTCCACACGCTCTACCTTCAATC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       243124 483 +   783054 TTATTGgtcttttttcatgaatgcTCCGAACATTTCCACCGGAACTGGGAAGACAATCGTCGAGTTGTGTTCAGCTCTGAATATAATTCAATTCCAAATTGCAAT---------CGTATTTGATTTATTTTAAAACGAgggatttttcaactttctttttgttctgttaCTATGTAGAAAGGTTCGAGATC---AACAAAAATAACCATTCCACTTTCGCCTGACATTTGTCGGGTAGAacctaaaattccaaaagaaacTTGTATC-ACTTACGCAATGCTGTTGAGTGCTTGCAAGTGACGAAGCTGAAGAGCCACTGGGTTAGCTTGAATGACATCAGCGGCTTCCTTGAGAGCTCGGGACGCTTTCTGCTCTCCCTCAGCTGCGACAACTTTGGCACGAGCTTCACGAGCTGCTTCGGCTTCTGCTGCCATAGCACGAGTGAGTTGTTGCGGGAGACGAATGTCTTTCACTTCCACACGTTCTACCTG-AATG
i caePb3.Scfld02_62     I 571 I 23

a score=-939.000000
s ce10.chrX              1058290 12 + 17718866 ---------GAATGATTGATG---
s caeRem4.Crem_Contig24   751936 12 -  1162296 ---------GCATGCGAGATG---
i caeRem4.Crem_Contig24 C 0 I 222
s caeSp111.Scaffold548     30967 24 -    67506 AGACGTTTCGAGTAGACAATGATT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       243607 23 +   783054 I
e cb4.chrX              21405171 209 - 21540570 I

a score=-356.000000
s ce10.chrX              1058302 18 + 17718866 GCTTTGAATTGTCAGACA
s caeSp111.Scaffold548     30991 10 -    67506 ATTTTG--TTGT------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       243607 23 +   783054 I
e cb4.chrX              21405171 209 - 21540570 I
e caeRem4.Crem_Contig24   751948 222 -  1162296 I

a score=-23752.000000
s ce10.chrX              1058320 482 + 17718866  
s caeSp111.Scaffold548     31001 266 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       243630 383 +   783054  
i caePb3.Scfld02_62     I 23 C 0
e cb4.chrX              21405171 209 - 21540570 I
e caeRem4.Crem_Contig24   751948 222 -  1162296 I

a score=-3683.000000
s ce10.chrX              1058802 151 + 17718866 ATAACTACTAACTCTCTGGAGGCTAATCGGTGTGTTTGTTTGGGTTACGAAATTGTTTTTATTGAGCTTCTCAGTTTTAGTATTATTTGGCGAAGGAGCCCCAAATATGAGCATTGAGTGATCAGTTTATTATACTTTTGGGAAAAAAAAT
s caePb3.Scfld02_62       244013  17 +   783054 ataa--------------------------------------------------------------------------------atttg------------------------------------------------------aaaaacaa
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21405171 209 - 21540570 I
e caeSp111.Scaffold548     31267   0 -    67506 C
e caeRem4.Crem_Contig24   751948 222 -  1162296 I

a score=288008.000000
s ce10.chrX              1058953 468 + 17718866  
s cb4.chrX              21405380 515 - 21540570  
i cb4.chrX              I 209 I 31
s caeRem4.Crem_Contig24   752170 504 -  1162296  
i caeRem4.Crem_Contig24 I 222 C 0
s caeSp111.Scaffold548     31267 497 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       244030 512 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-1107.000000
s ce10.chrX              1059421 1 + 17718866 A-
s caeRem4.Crem_Contig24   752674 1 -  1162296 -T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     31764 1 -    67506 A-
i caeSp111.Scaffold548  C 0 I 37
s caePb3.Scfld02_62       244542 1 +   783054 A-
i caePb3.Scfld02_62     C 0 I 4
e cb4.chrX              21405895 31 - 21540570 I

a score=319.000000
s ce10.chrX              1059422 18 + 17718866 TCATTAATGTATCATTTT
s caeRem4.Crem_Contig24   752675 18 -  1162296 GTATCTGTCTGTCAGTTT
i caeRem4.Crem_Contig24 C 0 I 18
e caePb3.Scfld02_62       244543  4 +   783054 I
e cb4.chrX              21405895 31 - 21540570 I
e caeSp111.Scaffold548     31765 37 -    67506 I

a score=0.000000
s ce10.chrX              1059440 950 + 17718866  
e caePb3.Scfld02_62       244543   4 +   783054 I
e cb4.chrX              21405895  31 - 21540570 I
e caeSp111.Scaffold548     31765  37 -    67506 I
e caeRem4.Crem_Contig24   752693  18 -  1162296 I

a score=618.000000
s ce10.chrX              1060390 167 + 17718866 ATTTTGGGGGAAAAAATTAAAAAGCTGACTATTTTTAAATT----GACCATTTTTTAAATAACGGCGTTTATGGGTTTCGTTTCCCCCACCAAATCCACC---TTTAAAAAC--ACTCAACTTCTTTT------AAATTTTTCCCCGAAAAATTAAAAACTTTTTCATTAGATAATTGGAAG
s caePb3.Scfld02_62       244547 134 +   783054 ATTTTGCAGGAAAAAATCATAGA------------TAAATCAAgagattgtttttcaaataaaaa---ttttgga----------------aaatccaGCAGGTTTAATAACcgaaaaaagtagttttgcGTCAAAAATTGTCCCCTAGAAATTA-----------------Caactaaaaa
i caePb3.Scfld02_62     I 4 C 0
e cb4.chrX              21405895  31 - 21540570 I
e caeSp111.Scaffold548     31765  37 -    67506 I
e caeRem4.Crem_Contig24   752693  18 -  1162296 I

a score=885.000000
s ce10.chrX              1060557 8 + 17718866 AAAAAACA
s cb4.chrX              21405926 8 - 21540570 AAAAAGCC
i cb4.chrX              I 31 C 0
s caePb3.Scfld02_62       244681 8 +   783054 tagaaaca
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     31765 37 -    67506 I
e caeRem4.Crem_Contig24   752693 18 -  1162296 I

a score=-310.000000
s ce10.chrX              1060565 1 + 17718866 A
s cb4.chrX              21405934 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     31802 1 -    67506 A
i caeSp111.Scaffold548  I 37 C 0
s caePb3.Scfld02_62       244689 1 +   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   752693 18 -  1162296 I

a score=77787.000000
s ce10.chrX              1060566 125 + 17718866 ACCTTTAAGCATACACACATGGAAAATGGAAACGTGACAATAATAAGTATCCATGAAAGAGCTTGTAACGCATAACCGAAGATTGTGCCAATCGTCTCGTAATCAGGTGGCACATCCTGCAAAGT
s cb4.chrX              21405935 125 - 21540570 ACTTTTAAGCAGACACACATAGAAAATGGGAATGTGACGAAGATGAGAAGCCAGGAGAGTGCTTGTAGAGCGTATCCGAAAATTGTGCCGATTGTCTCATAATCAGGTGGTACATCCTGAAAAAT
i cb4.chrX              C 0 I 513
s caeRem4.Crem_Contig24   752711 125 -  1162296 ACCTTCAAACAAACACACATTGAAAATGGGAAGGTGCAGACAATAAGTAGCCATGAGAGTGCTTGTAATGCATATCCAAAAACCGTTCCAATCGTCTCATAATCAGGCGGTACATCCTGAAAAAC
i caeRem4.Crem_Contig24 I 18 I 2
s caeSp111.Scaffold548     31803 122 -    67506 ACCTTTAGACAAACACACATTGAGAAAGGGAAAGTGACAATAATGAGTAGCCATGATAAAGCTTGTAGTGCATATCCAAAAATTGTGCCGATCGTCTCATAATCAGGTGGTACGTCCTgtaa---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       244690 119 +   783054 aCCTTTAGACAAACACACATTGAAAAGGGGAATGTGACAATAATGAGTAGCCATGAGAGTGCTTGCAATGCATATCCGAAGATTGTGCCTATCGTTTCGTAGTCAGGCGGTACATCCTG------
i caePb3.Scfld02_62     C 0 C 0

a score=-3959.000000
s ce10.chrX              1060691 57 + 17718866 TAATTATCAATATTCAAGATT---------TTTCCATATC--GATTCCATATTTTACTCCAAATTTTG---------
s caeRem4.Crem_Contig24   752838 54 -  1162296 TGGTTCCTGACTCGTCAGAAT---------------TCTT--CGTCttgtttcc------aaattttcgaatatctg
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold548     31925 58 -    67506 -------tgatttttctgtatCAATGTGTGTTCGTTTCTTCGAATGGCATTTTCtct---aaactttt---------
i caeSp111.Scaffold548  C 0 I 24
s caePb3.Scfld02_62       244809 49 +   783054 --------AAtttttataggt---------tttatttttt--gatctcgttttctcttccaaattttt---------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21406060 513 - 21540570 I

a score=-1957.000000
s ce10.chrX              1060748 35 + 17718866 ATGGAATGCAAAAAGT------ATTGGAATCTTCGGGTATT-------
s caeRem4.Crem_Contig24   752892 15 -  1162296 ----------------------ATTAGAATCTTTTGG-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       244858 33 +   783054 ---------------tttctcgttcggAAATTTTTAGCATTtcgtttc
i caePb3.Scfld02_62     C 0 I 15
e cb4.chrX              21406060 513 - 21540570 I
e caeSp111.Scaffold548     31983 24 -    67506 I

a score=3665.000000
s ce10.chrX              1060783 229 + 17718866 CAAGAAAAGGAAAAGGGACTCGAGACATAAATCAACTTGG------------------------CCTGAGATAGAGAGAAAAGAGCACATTTAAAATGTACCCCCCTCCCCCACTTACCCTTTCTTTCCC--------------------------------AGGGCGACT----------CTTTTTCT--------------CCGTAGGGAAAAATAATTATTCTGAGCGTAAAG-CGAAGTA----------AATTGAGA-----ATTTGCGAG---AACTTTTGACG-----TGCCCTTT---GATAAAGTGCTT----------------GTTGTTGC---GTGTATAAAA--
s caeRem4.Crem_Contig24   752907 254 -  1162296 ---GCGAAAAAGGGGGGACTCCAAACATAAATCAACTTGAAGTT------------------TGCCTGAGTGGAAAGGGAGAGAGCAAATTTAAAATGCACACCCCAAG-----------------------------------------------------GGAGAGAGTGCTGTG-GACCTTTCTCT--------------CTCGGGGGAAAACTAATTATTCTGAGCGTAAAA-TGAAGTATGGCCTATTCAAGTGAAA----GTTGAGAGAGGAAAACTTTTGACGTCG--TGTCCTCC-----TATAGTGCACAAACTCAAAAAGTACATTTGTAGTTAGACGCAATTAG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     32007 273 -    67506 CAGAGTAGAGCGAGGAGACTCCAAACATTAATCAACTTGGAAgggggggggACCTCA-----CTTCAGAGTTGA----GAGAGCgtgaattcaaaatgcaCAGAGCCGCCGGAGGC----------------------------------------------GGAAAGAGCTCTGGG----CTTTTTCTTTCGCCTCACTCTGCTCAAGGAAAAACTAATTATTCTGAGCGGAAAATTGGAGTGAGGGCTATTCAAGTGAAACGGcggttgagaaaaaaaactt------tcgcatgtccttttttgatatagAGCAC----------------TTTATAGT---ACGTGTCTAAAA
i caeSp111.Scaffold548  I 24 I 134
s caePb3.Scfld02_62       244906 303 +   783054 tatatcGAAAAGAGAGGACTCCAAACATAAATCAACTTGATGCCGAAAAAGCTCTTGTACActttccgaatt----------ctctcaattccctctctattttcccttctttttctttctcaatttcgaGAGCGAGTTTAAAATGCACAGCCCCTCAGGCAAGAGAGGATTCGGGGGgacctttttct---------ctcttctcagGGGAAAACTAATTATTCTGAGCGGAAAATTGAACTAAGG------CAACTCAGGCGGTGGTTTGCGAGAGAAACTT-TGACGTCGTTTGTCCCCTTTTGATATAGTGCAA----------------TTC-----------TGTGTGAA-
i caePb3.Scfld02_62     I 15 C 0
e cb4.chrX              21406060 513 - 21540570 I

a score=-2116.000000
s ce10.chrX              1061012 61 + 17718866 GTACATATGGCTAATTAAATAAAAATT---GCACGCCAAGGAAAATGAATGAGAAGCAAAATTA
s caeRem4.Crem_Contig24   753161 61 -  1162296 ATATATCTGACC--TGACATAAAAATTGTTGCGTGTCTA-GAATGTGAACGAAATACACATTTA
i caeRem4.Crem_Contig24 C 0 I 608
s caePb3.Scfld02_62       245209 35 +   783054 --------------------GTACACTGAGGCATGCtga-gaaactcagaaaattg--------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21406060 513 - 21540570 I
e caeSp111.Scaffold548     32280 134 -    67506 I

a score=-6912.000000
s ce10.chrX              1061073 1006 + 17718866  
s caePb3.Scfld02_62       245244  634 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21406060  513 - 21540570 I
e caeSp111.Scaffold548     32280  134 -    67506 I
e caeRem4.Crem_Contig24   753222  608 -  1162296 I

a score=1255.000000
s ce10.chrX              1062079 40 + 17718866 ATTCTTTGTTGTTGGTGTCGCGAGTCCTTTCTCTTCCTTT
s caeSp111.Scaffold548     32414 22 -    67506 attttttgttgtttg------gagtcc------------c
i caeSp111.Scaffold548  I 134 C 0
s caePb3.Scfld02_62       245878 22 +   783054 ATCTATTTTTGTTTA------GAGTCC------------T
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21406060 513 - 21540570 I
e caeRem4.Crem_Contig24   753222 608 -  1162296 I

a score=745.000000
s ce10.chrX              1062119 58 + 17718866 ----TCCTTT----TTTTCCAATTCCCAAATCGTTAATATTCACGTGTGAAAGAAGACAATAACAA------
s caeRem4.Crem_Contig24   753830 67 -  1162296 TCcgtttttccgaattttgaaaGACCTTGTTCATCAATATTCAAACGTG-----TGAGTGagacaaaaaaca
i caeRem4.Crem_Contig24 I 608 C 0
s caeSp111.Scaffold548     32436 47 -    67506 ----ccctct----ttttcaaattact------tCTATGCATATAAATA-----TGAGAACCACAA------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       245900 52 +   783054 ----TCTCTCAGAATTTTTAAATACCT-----ATTCATGTTCACACGTG-----TGATAACGACAA------
i caePb3.Scfld02_62     C 0 I 66
e cb4.chrX              21406060 513 - 21540570 I

a score=-2543.000000
s ce10.chrX              1062177 67 + 17718866 -------AGCGACAACATTGTGAGTTACAGAACGGTTACTCTGCTCAACAGCAGAAGCATGCTCAAAAAGCGTG
s caeRem4.Crem_Contig24   753897 55 -  1162296 -------agcaaCCCAACTGTGAAGTGCT-----TTCACATTTCTCAGGAA------CATGCGTGAATAGCAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     32483 52 -    67506 AAACACAAACAATGTGA--GTGAAGTGCTAA--GTTCATCATGCTCAGTGA--------------Gatag----
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       245952 66 +   783054 I
e cb4.chrX              21406060 513 - 21540570 I

a score=-10834.000000
s ce10.chrX              1062244 89 + 17718866 GATAGAATAGATGTGAGTGATGGTTAATGCCAACAGTATTTTTTTTGGATTATGCTCAGATCAGATAGGGAGGGGTTTTGTGACTAGAC-----
s caeRem4.Crem_Contig24   753952 72 -  1162296 GATAGGACAGA-------------TATAGACAGGTGATTAAAGCGAGTTAATTATC-AAATCCTATGTGCTGGG---TAAGTACTAGAC-----
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold548     32535 59 -    67506 ------------------------gaaagaaaaaggaggat-----gAGTTATATCGAAATCAAATATATCGGG-----ATTATTAGAATGTG-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       246018 74 +   783054 GATAAAATAGG------------TTAAAGAAAAGCTGTGATTTTGAGTGCTTTGTTAAGGATAGGTAAGCTGA--------TCTGTGTATGTGT
i caePb3.Scfld02_62     I 66 C 0
e cb4.chrX              21406060 513 - 21540570 I

a score=38012.000000
s ce10.chrX              1062333 304 + 17718866 GTGTGAGGG---GGGAGTTTGAAAAA--TGTGAGTGAAACACGCACTTGCTGTGATACCTGATTTGACGACGGCGTTACCCACTGAGGCTCTGTTCTTTCCTTGTTTGACATTTACCTGGA-------------AAACTTTTAGGACGGTTAAAATTAAAA-----------------AAAAATAGTTTAGAAAAA----------AGAACGGAAAATATAAGAAATAAACTGTTTCTTGATGGGTCAGTGCAAAAACTAATTTTGTC---------AGTGCAAATTCAAATATTGTCAGTGCAAATTCAAATATTGTCAGTGCAAC-------TTCAAATATTGTCAGTGCAAA-------------------------TTCAAATATT
s cb4.chrX              21406573 263 - 21540570 GTGTGAGTGATAGGGAGTTTTAAAAC--TGTGAATGAAACACGCACTTGCTGTGATACCTGATTAGACGACGGCGTCACCCACTGAGGTTCTGTTCTTTCCTTGTTTGACATTAACCTGCAA------------AAACTGAGAAGGCTagggaaattttcaaatgag-----------aaAAGCATTATAGAATGA----------AGA------AAACCATGAATTCagtt---------------------ttatttcatttttttcagtcggAAAATGG----TGCTAAATAATT-----------------------TGAAGCTCGTTAAGCTTCTGATTAA----------------------------------TTCAAA----
i cb4.chrX              I 513 C 0
s caeRem4.Crem_Contig24   754029 319 -  1162296 GTGTGaatg---ggaaatttgaaaaa--tgtgagtgAAACACGCACTTGCTGTGATACCTGATTAGACGACGGCGTTACCCACTGAGGTTCTGTTCTTTCTTTGTTTGACATTTACCTGCAATTTTCATGGTTGAAGTTAATATgatgatgt---tttttgaaagagcACGTTTAGAAAATAGGAATACAGAATAATACGATTTTCAGA-----TACATTAAGAAATTAACT------------------Gagcaattttgtttttcttat------attGA----TCTTGTATCATT-----------------------TCAGTC---TTAACTTTCATTTTGACAGGTCATAGACTCCTTTTACAAAATAAAAGTCTTTCGAa----
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold548     32594 238 -    67506 -----AATG--gggaatttcggaaaaattgtGAGTGAAACACGCACTTGCTGTGATACCTGATTAGACGACGGCGTTACCCACTGAGGTTCTGTTCTTTCTTTGTTTGACATTTACCTGCAA-----------AAAACTCTCAATGTTCTGA---TTATAA-----------------GAACTAAATATAgtagga----------aaa-----------gaaaaaacgatt---------------------ctAAACCACTTTGTA---------ACTAA-ACTTCCAGCAGAATTGA---------------------TGCGTC-------TCCTCTCATAAA----------------------------------GTCACACGTT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       246092 235 +   783054 GT-TAAATa--gggaaagtttgaaaa--tgtgagtGAAACACGCACTTGCTGTGATACCTGATTGGACGACGGCGTTACCCACTGAGGTTCTGTTCTTTCTTTGTTTGACATTTACCTGAA------------------------------A---TTATTC-----------------GACAGAGATGAAAATGGA----------CAA--------TTTGAGGAATAAATT---------------------CGAATGAGCTTCACG---------AGTGA----CTGAgtaaaataga-------acaaaaactcTAGTTTCATC-------CTTTCGGATAGC----------------------------------TTCATATAAT
i caePb3.Scfld02_62     C 0 I 24

a score=-4611.000000
s ce10.chrX              1062637 28 + 17718866 GTCAGTGCCTGAAAAATGATTGGGAAGG
s cb4.chrX              21406836  7 - 21540570 --------CGCAGAA-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   754348 11 -  1162296 --------ctggaaaatta---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     32832  8 -    67506 ---------GTGAACac-----------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       246327 24 +   783054 I

a score=75916.000000
s ce10.chrX              1062665 317 + 17718866 ACGTTTTTTCGaattttaattaatttttatattatGTTTCAGTTATACATTTTTCAAAAGACGAACAAGATGAAAGAAAA--AAAAAGAAAAAAAACTTCCATTTGACTAGAGAGAAAGAATTGACTTTGGG---CAACCATG--AGCTACGCTTCGCAGCTCAGAGTAATTCAATAGGGGAGAAAGAAG-GGGGACCCC-------TCTGCAGTTCCTATGCTCCACCCACTTTGGCGAG--------------------------------------GGAGCTTC------GGAGCGAAAA-AGCTGAGAGAGGCAGAATAGAAAATAGAGGCG----------------------A---AGAAAATACGGACGAAGAGTTGA-----CGAAGGAAAGAGGATAG
s cb4.chrX              21406843 357 - 21540570 ------TTTCTCCTGTTATTG--GATTcacagcattttt---ttttg---------------------aatgcaacaagaacgaaaaaagaaagaatttgAGATAGAGTG--GAGAAAGAACTGACTTTGGGGCTAAGTCGTA--GGCTACGCTTCGCAGCTCAGAGTAATTCAATAGGGGAAAAGGGAGTGTGGACCTC-------TCTGCAGTTCCAATGCTCCACCCACTTTGGCGAAAAGCGAAAACGACGGCGACTacgatgaaaagaaaaaggagagcTTTTCCgaaagagtgaaaagagct-------tcagaataaagaatgtgaggaaggagacggaaagaaaaaagagaggcagaaaaaagaaacgaaaagttagccccaaaaaaggaagaggaaag
i cb4.chrX              C 0 I 282
s caeRem4.Crem_Contig24   754359 352 -  1162296 --gtttttttttttgccattt--tcattATGCTATGTTA---TTCTGTGTCATTTTGA------ACAAGatgtaaaatga--gaaaaaaaatgaattttccgATCGACTGGAGAGAAAGAATTGACTTTGGG---CAACCATAGGGGCTACGCTTCGCAGCTCAGAGTAATTCAATAGGGGAAAAGGGAG-GGGGACCTC-------TCTGCAGTTCCTATGCTCCACCCACTTTGGCGAGAAG---AAGC---------------GAAACGAGGGGGGAGAGCTCCTCGCAGGGGGTGAAAA-AGCT-------TCAGAATAGAGAATGTGAGGATggggaaaaaatggagaaaaaaa---aggaaaaaaaaacgaagagttggccgaaaaaaggagaaaggatag
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     32840 265 -    67506 ----------------------------------------------------------------aaaga---caaaaaga------aaacg--aattttcggttagaatgaagagaaagaatcgAATTTTGC---CGAGCGTA--GGCCACGCTTCGCAGCTCAAAGTAATTCAataggaggagaaga---gaagacgaGCGGGGACCTCGCAGTTCCTatgctccgcccactttggcaagaag---aaa--------------------------aaaggagctCC---GGCAGGGCAAAAA-AGCT-------TCAGAATTGAGAATGTGGGga--------------tgatgaaaa---aggagagaaaaacgaggagttgg--caaaaagaaagaaaggatAG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       246351 327 +   783054 ------------ACGCTATTC--TTCATATTTGATTAGT---TCATGCTTCatgaataaaa--gaaagaatgcaatagga------aagggaaaaaattacGCCAAGCTTGAGAGAAAGAATTGACTTTGGG---CAAGCATA--GGCTACGCTTCGCAGCTCAGAGTAATTCAATAGGGAGAGAGAA---GGGGACCTTCA-----CTTGCAGTTCCTATGCTCCACCCCCTTTGGTGAGAAG---AAGCG--------------AAAACGAGGCAAAGGAGCCTC---GCAGGAGCAAAAA-AGCT-------TCAGAATGGGAAATGTGGGGAAg----------ggagggaaaaa---aaaaagaaaaaacgaagagttgg-ccaaaaagaaggaaaagaaag
i caePb3.Scfld02_62     I 24 C 0

a score=12238.000000
s ce10.chrX              1062982 64 + 17718866 ---------CATTTTTTTTTCTT-TCAAGCTGACGGCTAAAGTGGATGAATCTGTTTTTAC---TTTTACTTTTTTA
s caeRem4.Crem_Contig24   754711 73 -  1162296 agttttttcttttctccttcttt-tagCTCCGACTGCTAAAGTGGATGAATCTGTTtttact--tttcactttttg-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     33105 76 -    67506 CGTTATTCCTTatacttctttttgtctGGCGCACAGCTAGAGTGGATAAAtctgtttttccttctttcatttttta-
i caeSp111.Scaffold548  C 0 I 372
s caePb3.Scfld02_62       246678 70 +   783054 aag-----attgcagtttttttt-ttgggctgaCGGCTAAAGTGGATGAAtctgtttttactttttctgcCTTTTT-
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21407200 282 - 21540570 I

a score=-20850.000000
s ce10.chrX              1063046 318 + 17718866  
s caeRem4.Crem_Contig24   754784 232 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       246748 480 +   783054  
i caePb3.Scfld02_62     C 0 I 292
e cb4.chrX              21407200 282 - 21540570 I
e caeSp111.Scaffold548     33181 372 -    67506 I

a score=-833.000000
s ce10.chrX              1063364 248 + 17718866 ATTTGGCAGGTGGGTCTCCATGT----GCATACATACTTCTTGAAATTGAAAATACTAAAGAAAATATCACCACTTTATTTTCAATTTGAATGCATTACTATTTTGGAAAACAATAAATTT----AATTAGGTAATTTT---CACTG-ACCAAGATGATAAATGCGCTGAACAAATGATAATGGCAATGACAAAAATGATACAGGCACTGACCAAAATGATATTGGCACT--GACCCATTTTCAATCTCTGACAAAGGTTTT
s caeRem4.Crem_Contig24   755016 227 -  1162296 --CAGGAAGGGGGTTTTCTGTCTATCAGCTGACAAGCTTGCTGTACATATA---ACTAAGGAAATTACAATAATTACATACCTAGTCTGCAGACAGAAAAGTCT--GAGAATGGTGATTTCTTAGAGCTCGGGAGTTCTGCCCACTACACTAAAATGTTTGTCATTTTGCATAAAGAATGACTAC-ATGAAGCAAAt---------------ttaaatgttatttttatttcaatccGTTTT------------ACGATTAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       247228 292 +   783054 I
e cb4.chrX              21407200 282 - 21540570 I
e caeSp111.Scaffold548     33181 372 -    67506 I

a score=-12628.000000
s ce10.chrX              1063612 288 + 17718866 TCAAAAAATTTATGACGATGAAGAT--TATCTCATTT--------TTGA----------TATTACTTTAAGCAAAGT----------TAAATCG----TTG--AACAGCGACACAAA---------ATATCAAGAATTATATTTTTGAGTTTAAAAAATAAGCAAACTGAAACATTTTTTTTTTA--ATTAGGAAACATTGCTGA--------TCCATGTTGATCA------------------------------AGATGT-----AAACTGAAAGGATATGTAACTAT--------------TTCACAGAAACTTGAAAGAA---------------------ATGGGGAG---CTGTGGCAAAAAAGAGCGGAAAACGAGTGAAAGATCATCAATGTTGCGGTTGCGCTTGAG
s caeRem4.Crem_Contig24   755243 233 -  1162296 TCAAGAATTTAAATctaatgaaaatgtgaaatgatTA--------ATGG-----------------------AAAGT-------GGTAAAATAA----TCGAAAGCAGTGATTCCCA----------GGAAAAACAGCACAGTAC------------------------------------------GTTCGAAAAATATCATGA---------------------------------------------------AACTAT-----GAAGAGAAAGATTCAGAAGGCTTGGACTCTGAATTTCTCTTCGTGTGCTTAGAATCT---------------------ATCGGAAA---CTAAAGAAAAAGCGgg-agaaaacaagaa----tttccGACGCTCGAAGTTGCATT----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       247520 411 +   783054 ttagaaaagtttttatagtAAAACTACGATTTCATTATAGTTATCATGGACTTACTCATTATAGTTATAATAAAAGTACAGATAATCAAAATTAGGGTTTAGCAGCAATAACTCAGATAAAACGtgggaaaaaatagtttatcaCTTAGAATCTAAAACAAGAAAGTTGAAAGTCTTGTTTACTGTggttctaaaaattctaagattttgaatttcgtgCTTCACAAACATGTGGACTCTAATTGTAATTTGAAGCAGCTGTAgatggaacagaaaatatcagaaaatagTACCTATGACTCTGTTTGAATGTGGTTATAATATTCAGAAGGTTTAGAAATGAAGACTGggaatctccaaaaaaaagaagaa-aaaaaaagagaaaaagatgcTGACGATCAGAGTTGCATT----
i caePb3.Scfld02_62     I 292 C 0
e cb4.chrX              21407200 282 - 21540570 I
e caeSp111.Scaffold548     33181 372 -    67506 I

a score=1899.000000
s ce10.chrX              1063900 8 + 17718866 CAAAGGGA
s cb4.chrX              21407482 8 - 21540570 CAGAAGGT
i cb4.chrX              I 282 C 0
s caeRem4.Crem_Contig24   755476 8 -  1162296 CAGAAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       247931 8 +   783054 ATGAAGGT
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     33181 372 -    67506 I

a score=119358.000000
s ce10.chrX              1063908 598 + 17718866  
s cb4.chrX              21407490 618 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   755484 614 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     33553 565 -    67506  
i caeSp111.Scaffold548  I 372 C 0
s caePb3.Scfld02_62       247939 570 +   783054  
i caePb3.Scfld02_62     C 0 I 1200

a score=1379.000000
s ce10.chrX              1064506 4 + 17718866 GGAA
s cb4.chrX              21408108 4 - 21540570 GAAA
i cb4.chrX              C 0 I 1947
s caeRem4.Crem_Contig24   756098 4 -  1162296 GTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     34118 4 -    67506 GGAA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       248509 1200 +   783054 I

a score=17.000000
s ce10.chrX              1064510 11 + 17718866 AGTGGCGAGAA-
s caeRem4.Crem_Contig24   756102 11 -  1162296 AACACAGAGAA-
i caeRem4.Crem_Contig24 C 0 I 689
s caeSp111.Scaffold548     34122 10 -    67506 --TATGGAGAAA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I

a score=523.000000
s ce10.chrX              1064521 49 + 17718866 TTTGAGAAGCTGAGCAAATGGTTTTTCGCTTTTTTCAAAATTTGAAAAT
s caeSp111.Scaffold548     34132 34 -    67506 --TGTGAATCTGgtctgaaa-------------ttcgaaatttgggAAT
i caeSp111.Scaffold548  C 0 I 1355
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeRem4.Crem_Contig24   756113 689 -  1162296 I

a score=0.000000
s ce10.chrX              1064570 1627 + 17718866  
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     34166 1355 -    67506 I
e caeRem4.Crem_Contig24   756113  689 -  1162296 I

a score=5813.000000
s ce10.chrX              1066197 301 + 17718866 TGCCTTTTAGCTTTTCAACCTTTTACC---------TGCCAACC-CTTTAGTGTTTTCGTCATGCCGCAAAGGAACGGTAA---------GTGAGTAATACACTTTTAGGTTGAAAGGAAGACGACCTTTCACAGTTAGTCATACCATTATGTTAT-----GCGTCGCGAGATATGTTTGCTTGTCCGGGTGGTGGCTTCAGACAAACAACAAAACGGCGGAAAAGTTGATGAAAGTGAAGTTTTCGCATTTTTTGTTTTTGTTTTTTGTTTTTCAGAAAGGCATTCCTTCTGAGAAGTATAATGGGAAGAAGGGAAGGTGAATC
s caeRem4.Crem_Contig24   756802 268 -  1162296 TGCCGTTTAGCTTTTCAACCTTTATCTGTTTGACGGTGCCATTCTCTTTGGTAAAGACGCCGCCTGACAATGGAATGACAATGGAACGGCGTGAGTAATTCAACTTT-TGTTGAAAGGAAGACGACCTTTGACAGTTAGTCATACAAc-atgtttttaaaagaaatgcCGGATACTTCTGCTTATTTGGTTGGTagt----gaaaaaagacaaaac-----aaaagttg--------------------------ttttttgttttttgtttt--------------------ggaactGGAACTTGGACAGAGAAAAGTTAATC
i caeRem4.Crem_Contig24 I 689 C 0
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     34166 1355 -    67506 I

a score=0.000000
s ce10.chrX              1066498 118 + 17718866 GTAGCTCCAGTTTTCTTTGTGCTATAATACGCAGAGCATGAAATTGACAATTCTAGACTGCATTGGTAACAAAACCTGCAAAATGTTCCACATTTGGCAATATCTAGGGAGTTCAACG
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     34166 1355 -    67506 I
e caeRem4.Crem_Contig24   757070   0 -  1162296 C

a score=-802.000000
s ce10.chrX              1066616 178 + 17718866 TTTTAATTTAAAAAGGAATAAACATAAAATGTTGACAGAAAAAAATTA-CACGCCAATTAAAGTTTAACGAAATTTCTTCAAAAAATGATGCAAATCCTCGTGAGCAATTAAACACAATAAATATGTATATTGTTCATAAAATTCAAAAAATTTCTATCATCTCCAAAACTCATCGCTT
s caeRem4.Crem_Contig24   757070 131 -  1162296 TTTTAGT------AGGAAT--------------GGCAGTAGACAATGAGCATTCGAATTA---TTTGTCTATGTTT-TTCAGGAAA-GACACACAT--------------AACTGGCATACATAATTATATTGA-CAAATGACATGAAAGATATCAAT--TCTTTGAGACCAA------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       248509 1200 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     34166 1355 -    67506 I

a score=6348.000000
s ce10.chrX              1066794 192 + 17718866 CGATTCCTCATCATTATCTTCTTGAGCATTAAAAGTTTCTTC---------GTTGCCAACCGCCTCGATTCCAGCCAAATCCGCTATTGTTGTGGAGACATTCTGAAAAGATTGATATTAAAAAAATG--TCCAAATGTTTAAATGT-TTCTTACGTTGGTGGCATGACTATTACTGCTCTTGATTTCCGTGCTTGTGGAAGTG
s caeRem4.Crem_Contig24   757201 180 -  1162296 ------CTCCTCGTTTTCCTCGTCAACACTAAAAAGTTCACTGGGCTC---ATTTCCAGCCGCAACGATTCCAGCAAGATCAGCGATTGAGGATGGgacattctggaaaataatagagtgaaaaaacaa-tgaaga-----aaatatattACCATGCTG---------TTATTATTGCTTCTGGCTTCAGTGGCACCTGGAGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       249709 175 +   783054 CGA---TTCTTCATGTTCTTCAGCTATATTAAAAATCTCTCCGATCCCAGTACTCCCAGC---------TCCAGCTAGATCGGCGATCGACGACGGAACATTCTGAATGTCGAGAAAGTTAAATATTAGTTTCAGG-----AAATGTCATCTTACTGTG---------TGGTTAGCGGTTCT---TTCGGTCACGGCTGGAGAA
i caePb3.Scfld02_62     I 1200 C 0
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     34166 1355 -    67506 I

a score=26596.000000
s ce10.chrX              1066986 86 + 17718866 AATTTATATGCCGTGTCGGAGCATTTGATGCTGACATTGATTTCCAGATCAACGTAGCCTTTTGTTGATGTTCGGCAGGCTGGAAA
s caeRem4.Crem_Contig24   757381 85 -  1162296 AATCGATATCCGGTTTCAGAACTTTTGATGCTGACGTTGATCTCCAGGTCAACATATCCTCTTGTTGATGTCCGACAAGCTGAAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     35521 86 -    67506 AATCGATATCCTGCATCTGAGCTTTTTATGCTGACATTGATCTCCAAATTAACGTAGCCTTTTGTAGAAGTACGGCAGGCTGCAAA
i caeSp111.Scaffold548  I 1355 I 44
s caePb3.Scfld02_62       249884 86 +   783054 AATCGGAACCCACTTTCCGAGCTCTTGATACTCACATTGATTTCCACGTCGACATATCCTCTTGCCGAGGTGCGACAAGCTGTAAA
i caePb3.Scfld02_62     C 0 I 258
e cb4.chrX              21408112 1947 - 21540570 I

a score=-4108.000000
s ce10.chrX              1067072 304 + 17718866 TGGCGATAGTATTAAGTTTTCAGAACAGGAGAAGTACGGAGATTTGATAAAAAGTAATGTGTAAATTTTAAAAGTAAGTTTAAGGCAGCAGTTATAGGGGTTTCATTTGACAACTCATTTTgctcaattttagtaacagaggccgctagtagtctgaaatctacgagttcaaggcctgcgttctccttaatttatccagccatagctggaaagtgaaacattccacaaccggattatgggtcac-agtgctggctcggacgtggctttaagtaactgagcgcagtgtgaaaaccactaggaacgc
s caeRem4.Crem_Contig24   757466 112 -  1162296 --------------------------------------------------------------------TAAAGG----------------GTTATGAGGATTT----------------TTAGCTAACTtaag----------------------aaaacataaaaattagaaagtttCATGATTCTCA------------------------TAAAACTTTCC----CCGGGTTGTAAATAACTGGTGCTGAC-------------------------------------------AGGAACCC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       249970 258 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35607  44 -    67506 I

a score=0.000000
s ce10.chrX              1067376 116 + 17718866 tatactttactctcaggtccgcagtgcgtaTTTATCTGAATATACATTATTGGTTTCaaaatttttttttaattttaaaatGAGATAATTGTTCCCGGTGTTACTTACTTCTATTC
e caePb3.Scfld02_62       249970 258 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35607  44 -    67506 I
e caeRem4.Crem_Contig24   757578   0 -  1162296 C

a score=320.000000
s ce10.chrX              1067492 6 + 17718866 TCACAG
s caePb3.Scfld02_62       250228 6 +   783054 ttacgg
i caePb3.Scfld02_62     I 258 C 0
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35607 44 -    67506 I
e caeRem4.Crem_Contig24   757578 0 -  1162296 C

a score=-1677.000000
s ce10.chrX              1067498 33 + 17718866 -CAAAAACAATTAAATTACAAAATTTTGATTCTT
s caeRem4.Crem_Contig24   757578 12 -  1162296 CCAAAACAACTT----------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       250234 30 +   783054 -taataCTATTTGAACTGCTACATCCAACCT---
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35607 44 -    67506 I

a score=73468.000000
s ce10.chrX              1067531 277 + 17718866 ACCATATCTTCCATCTGCATTCGCCGGTAACATTGGATCCACAAACTCTGCATTCACTCGTCTCAACTTTGCAATCAATTGCTGAACTGTCGAAGAAGGTTCTGGCAGGAAACAGTGTACTCGGCAAACGTGTCTGAA----------TTGATTTGAACTAAGTGAAAAATTGTTTAAAA---------CTCACTTTCCAGGCTCTGTTGGAATCGGAAGCATACCATAGCCAGTCACACAATCTTTACCAGAATGGTCTTTAGAAAAACAGTTGAGTACAAGACGAGGCCCTGAA
s caeRem4.Crem_Contig24   757590 282 -  1162296 ACCGTATCTCCCATCGGAATTCGCCGGTAACAATGGATCCACAAACTCTGCAGTCACACCACGAAGTTTGGCAATCATTCGTTGCACAATTGATGATGACTCAGGCATAAAACAGTGAACTCGGTGAATATGCCTTAATAGAATGATAATTAATTAAACA---TGGAAAATCA--TGAAA---------CTCACTGTCCTGGTTCTGAAGGAACTGGTAAAACTCCATATCCAACAACACAATCTTTTCCAGAAGTATCCTTTGTAAAACAATTGAGAACTATGCGAGgccctgaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     35651 281 -    67506 ACCATATCTTCCGTCTGCATTTGCTGGCAACAAGGGATCTACGAATTCTGCATTAACACCTCTCAGTTTTGCAATTGTTTGCTGTATTATAGAAGAAGACTCTGGGAGAAAACATTGAACGCAGCAATTATGTCTGAA-------AATACTTTTCGAAGC------AAAATCA--TGAAATCTAAGGTTCTCACTTTCCAGGTTCTGCGGGTACAGTAAGGACTCCATAACCAGTTACACGATCTTTACCAGAattatcttttgaaaaacaattgaacaCAAATCGTGGCCCTAAA
i caeSp111.Scaffold548  I 44 C 0
s caePb3.Scfld02_62       250264 278 +   783054 ACCATATCTCCCATCAGCATTTGCTGGCATAAGTGGATCTACGAATTCTGCGTTTACACCTCTCAACTTCGCGATTATTTCCTGCATTATTGATGAGGATTCCGGAAGAAAACAGTAAACACGACAAATGTGTCTGAACCAGGCTACTATGATTTAGACA------AAAGCTA--TGAA----------CTCACTTTCCAGGCTCAGTTGGAACTGTGAGCACTCCATACCCACTGACAGAATCTCTGCCAGAATTGTCtcgtgaaaaacaattgagaactAATCGAGGCCCTGAA
i caePb3.Scfld02_62     C 0 I 34
e cb4.chrX              21408112 1947 - 21540570 I

a score=273.000000
s ce10.chrX              1067808 1 + 17718866 A
s caeRem4.Crem_Contig24   757872 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     35932 1 -    67506 A
i caeSp111.Scaffold548  C 0 I 39
e caePb3.Scfld02_62       250542 34 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I

a score=91.000000
s ce10.chrX              1067809 1 + 17718866 A
s caeRem4.Crem_Contig24   757873 1 -  1162296 a
i caeRem4.Crem_Contig24 C 0 I 11
e caePb3.Scfld02_62       250542 34 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35933 39 -    67506 I

a score=0.000000
s ce10.chrX              1067810 516 + 17718866  
e caePb3.Scfld02_62       250542  34 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35933  39 -    67506 I
e caeRem4.Crem_Contig24   757874  11 -  1162296 I

a score=740.000000
s ce10.chrX              1068326 18 + 17718866 TGAAATTACCTTTACAAA
s caeRem4.Crem_Contig24   757885 18 -  1162296 tGACATAATTTTTATAGA
i caeRem4.Crem_Contig24 I 11 C 0
e caePb3.Scfld02_62       250542 34 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35933 39 -    67506 I

a score=-299.000000
s ce10.chrX              1068344  5 + 17718866 ----------ATAAC
s caeRem4.Crem_Contig24   757903 15 -  1162296 ATTCAAAAGTTCTAC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       250576  5 +   783054 ----------acAAC
i caePb3.Scfld02_62     I 34 C 0
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     35933 39 -    67506 I

a score=51130.000000
s ce10.chrX              1068349 196 + 17718866 TCACACATAAAAGGGCTGCTTCCTTTCAAACCACACTCGAAGGGCAAATCGATGAAAATCTGATTATCAGCGCCTCGAAATGAGAACGAGGATAGTGAAACTGTCTCTCCATTGATTATTTTCCAATCGCCTGTTGCAACAGTGCTCAGTTTGACACAAACATTGGATTCTTCCGGGAACT-GAAAT--------TAGTTTTATT
s caeRem4.Crem_Contig24   757918 186 -  1162296 TTACACATAAAAGGGCTGTTTCCTTTTAGACCGCACTCAAAAGGTAGATCAATGAATATTTGGTTGTCAGTACCACGGTAGGAAAACGAAGATAACACTACACTTTCTCCGGTCATCACTTTCCAATCACCAGTAACAACAGTGTGGAGCTTCACGCACACATTCGATTCTTCAGGGAACT-GAAAT------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     35972 194 -    67506 TTACACAGAAAAGGGGATGTGCCTTTTATCGCAAACTCAAACGGAagatcaataaaaatttggttGTCGGTGCCTcgatatgaaaatgatgagaggGCCACACTTTCTCCAGTTATTACTTTCCAATCACCGGATGCTACAGTATGGAGTTTGACACACACATTGTTTTCTTGTGGGAACT-AAAATG-------TATTATT---
i caeSp111.Scaffold548  I 39 I 912
s caePb3.Scfld02_62       250581 202 +   783054 TTACACATAAAAGGGTTAGTGCTTTTCAAGGCACATTCGAATGGGAGATCAATAAAGAGTTGGTTGTCGGTTCCGCGATAGGAAAAGGAAGACAGGAAGACGCTTTCTCCTGTTATGATTTTCCAATCGCCCATTGCAACTGTATGAAGTTTAACACATACATTTGTTTCTTCTGGGAACTGAAGATGTTGGAATTACTATT---
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21408112 1947 - 21540570 I

a score=-1691.000000
s ce10.chrX              1068545 22 + 17718866 --------ATAGTTTCAGTTATATTTAATT
s caeRem4.Crem_Contig24   758104 20 -  1162296 ATagcaaaatattttctgtt----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       250783 22 +   783054 ---AGAGATTGATTCTTgct-tattt----
i caePb3.Scfld02_62     C 0 I 577
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I

a score=2.000000
s ce10.chrX              1068567 109 + 17718866 GCTCGGCAC-ATTACAGCGAAAAAAGTTATCTGTTTTTGATCTATTAAACTTT--GCAGATATTATATTCTAAAAAAAATTATCAGA----AAACTATTTGAAAATACATGGTTGT
s caeRem4.Crem_Contig24   758124 111 -  1162296 ggTTGAAACGAACACAATGGATGGAGTCTGTGGTTattattcaaatcattttgtAGCAGCtatcaatttc-----aatatttccaaaaagtaagtttttcaaCTAAATATTGTTAT
i caeRem4.Crem_Contig24 C 0 I 83
e caePb3.Scfld02_62       250805 577 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I

a score=0.000000
s ce10.chrX              1068676 87 + 17718866 CAAAACTTCCACTAATAAAACGGTAAGTGCTGCTGGTTGTGCAAATAATCGTATTTTTCAAAAAAAGCACCACCAACAGCTCTGCAA
e caePb3.Scfld02_62       250805 577 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I
e caeRem4.Crem_Contig24   758235 83 -  1162296 I

a score=852.000000
s ce10.chrX              1068763 105 + 17718866 TATCTGTGAAAACCTATCT---AATCGACTTTTTGGAGTTTTTTGGCAAATACGAATTTTTATTATAATATGAATTTCGAACTTATATTTCAAAAGAATAAGTGACTA
s caeRem4.Crem_Contig24   758318  99 -  1162296 TATCTGaaagaatatatttttcaatatatttttt--agtttttaagtattaaccgttttttgtagcaa----aattttgga---atgttCCCAAAacgtttgtttttt
i caeRem4.Crem_Contig24 I 83 C 0
e caePb3.Scfld02_62       250805 577 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I

a score=629.000000
s ce10.chrX              1068868 376 + 17718866 GTTTTTGAAATTTTCAC---------TTGTTTTACTACCTGTATTAACAAATAAGGT---TAAGAAGCTCTCATTTTTTTTC---TGAAGTTATAACAACAAAAATAGGAAAAAA----------------ATTACCTCGGTAGTCCGAACGTTTCCATGAATTGTCAGTACAATACTATCAGCTTTCTCCAT----CGT----------------TTTTCACACTCCAAAACTGACAATCAATGTCAAAA-------------TTGTG-AGAAGCGTTACGTAAA---C-TAGTCTCTAGGTTGCCAAGGGAACATCTGCATAGAGA-----GAGCGTGCAATGCGGAGGGACAGACAAGGAAGGGGGAGG-----------------GCACCTGCATTTCGCGCAC-TCGCAGCAGAT-------------GGATAC---------------------GACAAC--CAGCTGGTAGAAGAGCTGGAGAACCGGAAGGAACTG----
s caeRem4.Crem_Contig24   758417 461 -  1162296 gtttagaatATTACAAAGCTAGCACCTTCTATTGTTTA----ATTACCA---GGCTTTTGTACCAGTAGCCCCTTTCGCTTCCCTCAAACAAATAGCTACATCCCtcctccaattttcaattatattctCACTTACCTCAGTTGTCCTAACATTTCCATGAATTGTAACAGACACAGCGTCTGATTTTTCCAT----TGA-GCAAGCAAAGTTGACAAGTGATA--GCAAAAATGACAGT---TATAATGACATATGCCACTAGAAATATGAAATCGTTACGCAAA---CGTAGTCACTCGGTTGCCAGGGAGACAGCTGCA---AAACGAACGAAAATGTGAG--GGAGGGATAG--AGAGAAGGGGGagaaacacacacacacacacacacacacatttcGCGCAT-----AACTGAC-------------ACATGCAGCTGTCGGTGTCCATCAAGGGAAACC--CAGCTGGTATGACCACCTACGGAGGAAACGGAATGATTTG
i caeRem4.Crem_Contig24 C 0 I 797
s caePb3.Scfld02_62       251382 440 +   783054 GTTTGTAAACTTCTGAA---------Ttgtatgttttc----atttctgaatgaAGTTAGttaaatgaattcatttttcttc---tacgcaaatgtcaaaaaaatctatcaaaacaTAAAT----------ATTACCTCTGTAGTTTTAACGTTCCCATGAATTGTCAACGATACAATTTCCGATTTGTCCATGATATGACAGAATGAAAATAAGCAGATGACACTGGAAAAGTGACAGTTTCtatcaaaacaaatcaaac---GAATG-GAAAGCGTTGCGTAAACCTCGCATCCACTC-GTTACCAGGGTGACAACTGCC---AGA-----GAACATGGCAG--AAAGGAGACG--CGGATGTGGTGAGG---------------------ACGTATTTCGCGCATTACGCAGCTGCCCGGTCAAGAGCGGACATCCAGCTGTCAATAGGTGGAAGAGGACCCCCTCGACTGGTTGGACATAATGAAAATCCGAAGAAATGA----
i caePb3.Scfld02_62     I 577 C 0
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I

a score=796.000000
s ce10.chrX              1069244 69 + 17718866 TCGATTGGTTATTAGATGTTCCGGATTTAGGAGAATATAAGGATATAGGACTTTTAGTGAACAAAACTG
s caePb3.Scfld02_62       251822 63 +   783054 TTGGTTTGTACCGGAACGTTACAAAAT-----GAATATTAAAAC-TGATAcctttggaaaacaaaaatg
i caePb3.Scfld02_62     C 0 I 656
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166 912 -    67506 I
e caeRem4.Crem_Contig24   758878 797 -  1162296 I

a score=0.000000
s ce10.chrX              1069313 2949 + 17718866  
e caePb3.Scfld02_62       251885  656 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I
e caeSp111.Scaffold548     36166  912 -    67506 I
e caeRem4.Crem_Contig24   758878  797 -  1162296 I

a score=2714.000000
s ce10.chrX              1072262 113 + 17718866 CAAAAAATATCAGTTTTTTGGTGGTTGTTGTTCACACAAACAATACCACGGAT----ACTGTGGGTTTGCAGTGTTGGTTTCTAATTAGA------GAAAGAGGCGGAGCCTGTG-TAGTTCAG
s caeRem4.Crem_Contig24   759675 112 -  1162296 CAGACAATATACATTTCCT---TGTCACTGTCTCC--AAACTGTACCAAAGAT----ACTGTCG---CCGTCTTTAGTTGTCTAAttagaaacttgaaaaaagggaaaaactgGGATTCCTCAG
i caeRem4.Crem_Contig24 I 797 C 0
s caeSp111.Scaffold548     37078 104 -    67506 caaaaaatttcaatttttt--ctgtttctgttctc----tttctcccaaaaatgaaaactgt-----cCAAATGTTGTTGTCTAAttagaaatctgaaaaca---------tggGTTGCTCCAG
i caeSp111.Scaffold548  I 912 C 0
e caePb3.Scfld02_62       251885 656 +   783054 I
e cb4.chrX              21408112 1947 - 21540570 I

a score=906.000000
s ce10.chrX              1072375 16 + 17718866 GTCACAGTGTTTGTCA--------------------
s caeRem4.Crem_Contig24   759787 33 -  1162296 ---GTATTGTTTGTTCTGGCGCGGTGACGGGGGTGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     37182 16 -    67506 GCCATATTGTTTATTT--------------------
i caeSp111.Scaffold548  C 0 I 31
s caePb3.Scfld02_62       252541 16 +   783054 GTGACATTGTTTGTCT--------------------
i caePb3.Scfld02_62     I 656 I 7
e cb4.chrX              21408112 1947 - 21540570 I

a score=51227.000000
s ce10.chrX              1072391 133 + 17718866 AATGACACATACACTCTTATAAACCGAGATGCGTTCGTTTTTTTTGTTGCACAAAGGGGACCCGTCGGCACATGAAAGGGGGAAGAAGAAAG---TAGGAACAGAGCCTGGAGA--------AGGTGAGTGTAAGAAATTGGCT
s cb4.chrX              21410059 126 - 21540570 AATGACACATACACTCTTATTAATCAAGATGCGTTTTTTCTTACCGTTGCACAAAGGAACCATGTCGGCATCTTG--------TGAAGAAAGTAAAAGGAA-AAAGCCTGGAGA--------AGGTGAGTGTAAG-GATTGGCT
i cb4.chrX              I 1947 C 0
s caeRem4.Crem_Contig24   759820 119 -  1162296 AATGACACATACACTCTTATAAACCAAGATGCGtttttt-------ttGCACAAAGGGGACCTGGCGGCACAttg---------aaagaaagtgaaaaagg-agAGCCTGGAGA--------AGGTGAGTGTAAGAGAATGGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     37229 120 -    67506 GGTGACGCATACACTCTTATGAACCAAGATGGGtttttt-------tAACACAAAGGGGTTCTGTCGGCacatga---------aaagaaaa---aaggaacagaGCCTGAAGA---CGAAAAGGTGAGTGTAA--AAGTGGCT
i caeSp111.Scaffold548  I 31 I 772
s caePb3.Scfld02_62       252564 111 +   783054 AATGACACATACCCGCTTATAAACCAAGATGGG---TTA-------AAACACAAAGGGGACCTGTCGGcacatga---------aaagaaag---aagaaa-ggagcCTGGAGAGTGTAAAAAGG--------A--AATTGGCT
i caePb3.Scfld02_62     I 7 C 0

a score=546.000000
s ce10.chrX              1072524 1 + 17718866 T
s cb4.chrX              21410185 1 - 21540570 T
i cb4.chrX              C 0 I 533
s caeRem4.Crem_Contig24   759939 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 617
s caePb3.Scfld02_62       252675 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     37349 772 -    67506 I

a score=492.000000
s ce10.chrX              1072525 89 + 17718866 TCACCGTAACACGTTCTACAGGTAAATAGTGGTAAATATAATTTT---CAAAAAGATTCTGGTTTTTAGACCAGATTTTTTGTTGAATTTTT
s caePb3.Scfld02_62       252676 77 +   783054 --ATTGTCACTAGCCC-------------AGGTAAACATATTTGTTACCAGGAAAGTTCTCATGGTTCAACAgcaaattttcccaaattttt
i caePb3.Scfld02_62     C 0 I 663
e cb4.chrX              21410186 533 - 21540570 I
e caeSp111.Scaffold548     37349 772 -    67506 I
e caeRem4.Crem_Contig24   759940 617 -  1162296 I

a score=0.000000
s ce10.chrX              1072614 1098 + 17718866  
e caePb3.Scfld02_62       252753  663 +   783054 I
e cb4.chrX              21410186  533 - 21540570 I
e caeSp111.Scaffold548     37349  772 -    67506 I
e caeRem4.Crem_Contig24   759940  617 -  1162296 I

a score=487.000000
s ce10.chrX              1073712 199 + 17718866 GTTTGAGTTTTTGTTTTTG-------TTTCTGTTG-CGAAAGTGACTTTTCAAAAAATTTCAAAACATAATTCCATTATATTTTTTTAT-----TTTTCAAGTTTTTCTAACTTTATCCATCCACTTCACCAAAAAACCCAAGCTCAAGGTTGCTTTTTTTGTTCTTCCGTTTCCTGCAATTTTTACTAAATCATTTGA---TTTTGCAGAACTG
s caeRem4.Crem_Contig24   760557 201 -  1162296 gtttgagtgttt--ttttgaaaacattttatgtGGGCGTaagtgattttt-----gtttcaaaaacgttattt-gtcatagttttttcgaaacatttttacaTTAATATTGGTGTACAATTCCAGTTCCTCAGTTAGGTTCAGCACAGTATgcattctcttattttctattttctcataaCTCACAAAAAGCAGTGTAAGTGTTTTGGA------
i caeRem4.Crem_Contig24 I 617 C 0
e caePb3.Scfld02_62       252753 663 +   783054 I
e cb4.chrX              21410186 533 - 21540570 I
e caeSp111.Scaffold548     37349 772 -    67506 I

a score=-241.000000
s ce10.chrX              1073911 29 + 17718866 AAGTGTTTTGG----AGCAAATCGCGG-GAGCCC
s caeRem4.Crem_Contig24   760758 20 -  1162296 ---TGTTCTGA----AGAATTTGGAGC-------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       253416 34 +   783054 AAGTGTTTTGGGGTTGgcattttgagaagaattc
i caePb3.Scfld02_62     I 663 C 0
e cb4.chrX              21410186 533 - 21540570 I
e caeSp111.Scaffold548     37349 772 -    67506 I

a score=-2354.000000
s ce10.chrX              1073940 5 + 17718866 ------ATCTT
s cb4.chrX              21410719 5 - 21540570 -ATATT-----
i cb4.chrX              I 533 C 0
s caePb3.Scfld02_62       253450 5 +   783054 GAAGC------
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     37349 772 -    67506 I
e caeRem4.Crem_Contig24   760778 0 -  1162296 C

a score=70791.000000
s ce10.chrX              1073945 310 + 17718866 ACCCACCTGCC-TTTCCTTCCGTCACA----------TCATCCG------TCC--------CTCAATATTGCACATCTTCA------CCCATAGGCTTTCA-----AGGAGGCCTTC---CTCCTCCTCCTC---------CTGCTCTG-------------CCCCTC-------T-------------------TTC-------A------------TCTACAGTAT--CCCTCCTGAAAGCTC-----AAGATCAT-----------AGCGACTCCGCCCACATTTCTTCTATTTGAGATAACTCTCTCTTGCTCCTGCTCTCTCTCTCTGTGT-TTTGTAGAAGAC---------CGGAGGCAAAA--------------GCTCAATCTCATGGTGTGTATCGTTTATCCTTCTGGCGCGATGGAGAGGTGAGCGACAATGTT-TTTTCAATTAAA
s cb4.chrX              21410724 391 - 21540570 ACCCACCTGCTTTTTCCGTCCGTCACCCATGT-----TCATTCGTTTGGCTCTTCCTCTCGTCCAATATTGCACATCTTCAACCATTTCAATAAGCTTTTAGAAGAGGGTGGTTCTC---CTCTCCTTCCGTTTTCCACTGCCACCATTCACTCAAACGCATCCTCTT--TAACGT---CATTCGT-TGGTGCCATAC-------AACCCAACCTCagtctacagtat--ccctccTGGAAGCTCATGCTGTGTTTATTCCTCTCCCAATCCGACTCCGccc--catttttttattcaagatAACCCT-------------------------TCTGTCCATAG--------------GGGGAGAGCAAGCCAACGCATCAAAGCCGAATTACATGGTCTGCATCGTTTATCTATCCGG---GATGGAAAGGTGAGTGACAGGAGT-TTCTAAAttgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   760778 345 -  1162296 ACCCACCTGCCTTTTCCTTCCGCCACATACAC-----ACA----------TCTTCTTGTC-TCCAATATTGCACATCTTCAACCATTTCTATAGGCTTCTTGGAG-GGGCGGCTCTT---GTCTCCTTCCGT---------CCATCTTCCACCC-----CATCCTTTTCCCAATCT---CTTTCCTCTGTTTCCCTTC-------AACCCACATattttctacagtat--ccactGAAAGAGCTCATGCTGTGTATTCTC---------Gccgactccgccc-acatttttctatttgagATAACCTC-------------------------CCt-tctgtaga-------------aaaaagaaaaagct-----------gcTCAATTCCATGGTTTGCATCGTTTATCCTTCTGG---GATGGAGAGGTGAGTGACa----t-ttctaaattaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     38121 349 -    67506 ACCCACCTGCC-TTTCTTTCCGCCACCCACCCCACCAACACGCA------TCTTCATG---CCCAATATTGCACATTTTCAAGCGTTTCTATAGGCTTCTTAGAT-AGGAGGCTCTTCCCCTCCCCCTTCTA---------TCCCTACA-------------CCCATT--CAATCT-TTCTGTCTTCCTGTTCTTTTC-------ACATCCTTCacattctacagtat-cctaaTCTGAAAGCTC-----GTGTGCATTCAT-------Ttcgactccgccc-ctttgtTTCCATTTGAGATAGCCTCCC-----------------------ATT-GCTATAGCT------------CGAGAGAAAACGCT-----------GATCAATTCCATGGTGTGCATCGTGTTTCCTTTTGG---AATGGAGAGGTGAGTGgca--tgt-ttttcaattaaa
i caeSp111.Scaffold548  I 772 C 0
s caePb3.Scfld02_62       253455 348 +   783054 ACCCACCTGCT-TTTCCTTCCgccacacacat-----acacaca------tcTTCATG---TCCAATATTGCACATCTTCAAGCAGTTCTATAGGCTTCTTGGAG-GGGCGGCTCTT---GTCTCCTTTCCG---------TCACCCCATACCA-----CATCCTTTT--CAATCTATTCTTTTCCtctgttctcttcttctcgaacCCCACACAcattctacagtatccccacCCTGAAAGCTC----------CATTc-------------accccgcccactttttcgcTATTTGAGAT-------------------------------ATT-TCTGTAGCTGAGAGGATTCCGCGTGGAAAAAC----------------TCAATTCCATGGTGTACATCGTTTTCCCTTCTAG---TATGGAGAGGTGAGTGACA--AATATCCTAAATTAAA
i caePb3.Scfld02_62     C 0 I 85

a score=-1998.000000
s ce10.chrX              1074255 12 + 17718866 --CTTGACGTTTTA--
s cb4.chrX              21411115 16 - 21540570 tatttctttttttaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   761123 16 -  1162296 ttttttgattgtgact
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     38470 10 -    67506 ----tatAGTTTTA--
i caeSp111.Scaffold548  C 0 I 51
e caePb3.Scfld02_62       253803 85 +   783054 I

a score=-233.000000
s ce10.chrX              1074267 20 + 17718866 TTCGGGAAATT-----TATTTTTTT---
s cb4.chrX              21411131 25 - 21540570 ttcagaaaatttcaaaagttttttt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   761139 22 -  1162296 ttt---taatt---aaactttttttatt
i caeRem4.Crem_Contig24 C 0 I 31
e caePb3.Scfld02_62       253803 85 +   783054 I
e caeSp111.Scaffold548     38480 51 -    67506 I

a score=156.000000
s ce10.chrX              1074287 9 + 17718866 CCACAAATA
s cb4.chrX              21411156 9 - 21540570 tttcaatta
i cb4.chrX              C 0 I 52
e caePb3.Scfld02_62       253803 85 +   783054 I
e caeSp111.Scaffold548     38480 51 -    67506 I
e caeRem4.Crem_Contig24   761161 31 -  1162296 I

a score=0.000000
s ce10.chrX              1074296 385 + 17718866 TTGAATTAGGTTCTTTTTAGAAGCTCCTGTGAACATTTAGTTTTCAAATTTAAATGTTCCGAATTTTTTCTACCGTTGTGAAAAATCAAGGGTCTACCAAAAAATGTTTTCTTCTACTTGGCAACATTTCTGCTATTGTCCAAATTTTTAGAAAAATCCAAAAGCTTATTTGTGTGTCTTAATGGATGGTACGGTGGAATAACGCTCTGGAAGCTTTTTGAAAAATCTAATTTTTTTACCGAACGTATTTTTTAAATCAAAAATTAAAAGTTTCAAAAAATCTTCAACAATTTATACTGATCTCTGAAGTACCCTAAGAATTGACTATCTTCAAAATCAATGCTTTTGGAGCAAATCTACAAACTTCCTCGTAAGACCGTCCCCA
e caePb3.Scfld02_62       253803  85 +   783054 I
e cb4.chrX              21411165  52 - 21540570 I
e caeSp111.Scaffold548     38480  51 -    67506 I
e caeRem4.Crem_Contig24   761161  31 -  1162296 I

a score=182.000000
s ce10.chrX              1074681 2 + 17718866 TT
s caeSp111.Scaffold548     38531 2 -    67506 tt
i caeSp111.Scaffold548  I 51 C 0
e caePb3.Scfld02_62       253803 85 +   783054 I
e cb4.chrX              21411165 52 - 21540570 I
e caeRem4.Crem_Contig24   761161 31 -  1162296 I

a score=180.000000
s ce10.chrX              1074683 1 + 17718866 T
s caeRem4.Crem_Contig24   761192 1 -  1162296 t
i caeRem4.Crem_Contig24 I 31 C 0
s caeSp111.Scaffold548     38533 1 -    67506 c
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       253888 1 +   783054 T
i caePb3.Scfld02_62     I 85 C 0
e cb4.chrX              21411165 52 - 21540570 I

a score=118258.000000
s ce10.chrX              1074684 378 + 17718866 TTCCAGAGATTGCGACATAGTAGATTTGGACCAACCCTCTCTCGGAACAGTGATCAGTATCAAAGATGGATCAACGCCCACTGATATATGTAAGTCTACCAGGAATAAAAAAGAAATGGATAGAGAGTAGAAAACGAATAAAACTAATATCATATTGAAAACAATC--AAAACAAGT-TTTAAGC---------------------------TCATAAGGTTTC--------CAGGGGCGGA---------AAGCTTGGTGAAGCACC-TTAT--AAGCTTTCGAATAATTA-TTTTTGATGAGTCTGCTCCTCATTT----CAGCGACAACGTCTAGTACAACGGAAGACAAGCTTTGTTCTGGTTGTGGGTGTCTTATCAAAGATCGGTATATCTACAGGGTAAGTATTGAACCATTTT-------------TGTTTTTTTTTT--
s cb4.chrX              21411217 338 - 21540570 TTTCAGAGATTGCGATATTGTTGACTTGGATCAACCTTCACTTGGTTCGGGGATCATTATCAAAGATGG---ATCGCCCACCAATATTTGTGAGT-----------------------------------------------CTTAGAATTCTA-TGAAAATAATATGCCAATAATTCTTTCAATCTT------------------------TCATAAGGTTTC-ATAAGGCGAGAGACGAGC---TTTACAAGCCTGATGAAGCACC-TTATA-AAGCCCAAAACTTATTC-CTTTTGATGAGT------ATCCTTT----TAGCGAAAACGTCTAGCACAACGGAAGACAAATTGTGTTCTGGTTGTGGGTGTCAAATCAAAGATCGGTATATATACAGGGTGAGTA-------AATTT-----------TGTGTCCCATTTTCGT
i cb4.chrX              I 52 I 4
s caeRem4.Crem_Contig24   761193 335 -  1162296 tttcagagattgtGATATCGTTGACTTGGATCAGCCCTCCCTTGGTGCAGTGATCAATATCAAAGATGGCTCATCGCCCACAGATATTTGTAAGT-----------------------------------------------CTCAAAAGGCta-taaaaacaatataaaaacactt-tttcaatgCT------------------------TCATAAGGTTTCAATGCGGCGGTAGGCGGGCAAGCTTTCGGGCTTGG-GAAGCACC-TTATA-AAGCCtcgaa-taatta-tttttgatgagt------cTCTTTT----CAGCCACAACGTCTAGCACTACGGAAGACAAACTTTGTTCCGCCTGCGGCTGTCTTATCAAAGATCGGTATATCTATAGAGtaagtg-------atttt------------------caatttctc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     38534 374 -    67506 TTCCAGAGATTGTGATATCGTTGATTTGGATCATCCGTCACTTGGTGCATTGATCAGTGGCAAAGATGGTTCATCCCCCACAGATATATGTTAGTTTTTAG--------------------------------------AATGCTCAAAtgatatgaaaaacaatatggaaacactt-tttgaattgc----------GAGACGCATTCTTTTCCTAAGGTTTC---TTGATAAGGGGTAGGCGGGCATTCAGGCTTAAAGAAGCACC-TTATA-AAGCTCCAGcctgatta-tttttgatgagt------ACCATTT----CAGCGACCACGTCTAGTGAGACTgaggaaaaaatttgttcCGGCTGTGGTTGTCTTATCAAAGATCGCTATATTTATcgagtaagtt-------tttttcaattaggCATTATGCTCTCTTTCT--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       253889 358 +   783054 TTCCAGAGATTGTGATATTGTCGACTTGGATCAACCCTCACTTGGTGCATTGATCAGTATCAAAGATGGCTCATCGCCCACTGATATTTGTAAGTTCCTCG-----------------------------------------TCTAAAAAGCTA-GCAAAACAATataaaaacactt-ttcaaatagAATAGTTAGAGGAAAAGAAAGC---TCATAAGGTTTC----------AAGGCGGGCCGGCATGC-----TCATGAAGCACCTTTACATAAGCTTGAGcctgattactttttgatgagT-------CTATTTTTTCCAGCGGCGGCGTCTAGTACCAACGAAGACAAACTCTGTTCCGGCTGTTCTTGTCTTATCAAAGATCGGTATATTTATAGagtaagtt-------tcatt-------------ttctctagtttt--
i caePb3.Scfld02_62     C 0 I 442

a score=1638.000000
s ce10.chrX              1075062 3 + 17718866 TAA
s cb4.chrX              21411559 3 - 21540570 TAA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   761528 3 -  1162296 taa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     38908 3 -    67506 TAA
i caeSp111.Scaffold548  C 0 I 182
e caePb3.Scfld02_62       254247 442 +   783054 I

a score=-1078.000000
s ce10.chrX              1075065 22 + 17718866 ATTCATTCAGCAAATCATTTAA-
s cb4.chrX              21411562 14 - 21540570 AGTAGt--------tcatttga-
i cb4.chrX              C 0 I 194
s caeRem4.Crem_Contig24   761531 15 -  1162296 aCTGAT--------TTCTCTTAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       254247 442 +   783054 I
e caeSp111.Scaffold548     38911 182 -    67506 I

a score=442.000000
s ce10.chrX              1075087 34 + 17718866 TTTCTCACTTATTTCCTTGTCTTCCTGTAAATCA
s caeRem4.Crem_Contig24   761546 29 -  1162296 TTTTCC-----TATTCGtgtattttttcaagtca
i caeRem4.Crem_Contig24 C 0 I 422
e caePb3.Scfld02_62       254247 442 +   783054 I
e cb4.chrX              21411576 194 - 21540570 I
e caeSp111.Scaffold548     38911 182 -    67506 I

a score=0.000000
s ce10.chrX              1075121 1022 + 17718866  
e caePb3.Scfld02_62       254247  442 +   783054 I
e cb4.chrX              21411576  194 - 21540570 I
e caeSp111.Scaffold548     38911  182 -    67506 I
e caeRem4.Crem_Contig24   761575  422 -  1162296 I

a score=273.000000
s ce10.chrX              1076143 3 + 17718866 ATT
s caeRem4.Crem_Contig24   761997 3 -  1162296 ATT
i caeRem4.Crem_Contig24 I 422 C 0
e caePb3.Scfld02_62       254247 442 +   783054 I
e cb4.chrX              21411576 194 - 21540570 I
e caeSp111.Scaffold548     38911 182 -    67506 I

a score=318.000000
s ce10.chrX              1076146 18 + 17718866 ATGACAAAATAATGAAGA---
s caeRem4.Crem_Contig24   762000 18 -  1162296 ---GCGAGAtgataataaaat
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       254689 18 +   783054 ATTgcgagaaattgaaaa---
i caePb3.Scfld02_62     I 442 C 0
e cb4.chrX              21411576 194 - 21540570 I
e caeSp111.Scaffold548     38911 182 -    67506 I

a score=-9606.000000
s ce10.chrX              1076164 104 + 17718866 TTTTCAAAATCTTGAAATTCTCAGATTCTCCTATCAA-AAAT-----------TAAAAAGTTTATAAAATTAGAAACTATTTCAATTTCATACAAAAATAATCTCTTC----CATATCAA-------
s caeRem4.Crem_Contig24   762018  82 -  1162296 ---------------------ttgattactcct-caa-acatttcttttccaatgaaaacattaaagaatctaaaaactacaaaacttttttaaaag------ttttc----gaa------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     39093 107 -    67506 tttttaacatTTAGAAATCCCCCCATTCTTCTA-CAA-TCATACTTTCACTTATCAGaataaaatacaaattaATATtgactgaattttttaaagaa------tcttt----tattttg--------
i caeSp111.Scaffold548  I 182 C 0
s caePb3.Scfld02_62       254707 101 +   783054 -ttaaaacctTTAA-----CTTAGTTTTTTCGA-CAAGTCAT-----------TGAATGTAGACTTCAAACGCATAAtg--taacaattttcagaaa------tttttctcacattttgaaacaaaa
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21411576 194 - 21540570 I

a score=83586.000000
s ce10.chrX              1076268 159 + 17718866 CAT---TTTCAGGTAATGGAGGACAGTTACCACGAGAGCTGCCTCCGATGCTCGTGCTGCCAACTGTCTTTGAGCTCATTCAAGAAGTGCTTCTCACGGCATGGAAACATCTATTGTGAACACGACCATCAAATGTAGGCG------------CCCTTCTT-----GAGATTGCGTGCG
s cb4.chrX              21411770 157 - 21540570 CAT---TTCCAGGTAATGGACGAAAGTTATCACGAAACTTGTCTACGATGCTACTGTTGCCAGTTGTCTCTCAGCTCCTTGAAAAAGTGCTTCTCACGACATGGCAACATCTATTGTGAACACGACCATCAAatgtaagttttca--------aaa----------gaagttGCGTGC-
i cb4.chrX              I 194 C 0
s caeRem4.Crem_Contig24   762100 164 -  1162296 ------ttccaGGTAATGGACGAAAGTTACCATGAAACTTGTTTGCGGTGCTATTGTTGCCAGTCTTCACTCAGCTCCTTCAAGAAGTGCTTCTCACGACATGGAAACATCTATTGTGAACAGGACCATCAAATGTGAGTTGTGA--------AAACTCTTGATTTAACATCGCGTGC-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     39200 160 -    67506 ------ttcCAGGTAATGAACGAAAATTACCACGAATCGTGCCTCAAATGCTCTTGCTGTCAATTGCCGTTAAGCTCCTTCAAAAAGTGCTTCTCACGACATGGTAGCATCTATTGTGAACATGACCACCAAATGTAAGTGGGAA--------AGGCTTTG-----AAGATTGCGTGTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       254808 174 +   783054 cattcattGCAGGTGATGGACGAAAGTTACCACGAACCCTGCCTAAGGTGTTCCATTTGCCAATTGCCTTTGAGCTCTCTCAAGAAGTGCTTCTCACGACATGGTAACATCTATTGTGAACAACACCATCAGATGTGAGTTGGAATAAAGAAGATCCTTTG-----AAGATTGCGTGTG
i caePb3.Scfld02_62     C 0 I 114

a score=-17577.000000
s ce10.chrX              1076427 124 + 17718866 GGG--------CTCTTCTATCTCAGACCACTTACCCAGGCAAACGTGTTTTGGGTTCTCACAAATGAGGGGAGGGGGGGGGGGGGGGGGTGAAACATTTTTATGCTTAAAAAGCCAGTATTTTTATTACCCC-
s cb4.chrX              21411927  67 - 21540570 -----------AACTCATTACTTAATGCCT------------ATTAATTCAACTATTCCTCATGTTCTGAGAGAA-------------------------------------------GTCCTTGAGATACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   762264  58 -  1162296 -----------CACCAGCTACTTAGTGA-----------------GATTCTAGCTTCTCCAGAAATCTGTGA-----------------------------------------------TCATTCTAAACCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     39360  97 -    67506 -TGTTGCGAGAATTTCGTCTCATAGTTCATGAACGCTCAGAGAATCGTTTCATGATTGATCAGGTTTTCAGAGGGAAA----------------------------TGAAAACCAGGTGTCTTTGG-------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       254982 114 +   783054 I

a score=-5031.000000
s ce10.chrX              1076551 196 + 17718866 AATATCAAAAAA----------ATTAACGTCTCTGTTCAAAATTAATTCTT---------GCATTTCAATTTAT--------------------------------GAGC-----------------------------------ACAGTAATCCGGGAAAGTAGGT-GGAGGTGGAGCCCCACTC--------AAGGGCCG--------TGGATTATTGCAACATACATATAG--GGATTA--GTGGT---TGAAGTGAATCATTGACATGGTCACCTG-------GATAAGAAATCAACCAGGTCAATGTA-
s cb4.chrX              21411994 217 - 21540570 ----------------------ATCTAACTAGTTATTTACGTTCTGTTGACTTTTGG---ACGGTGCAATTTGTAAGGGTTCCCTATCTTCTTAGGTTATACACCAGAAC-----------------------------------ATGGTAATCCGCGTAA--AGATTGGCACTTGAGTCGCAATCATAGAGTGAGA-----------------TTATAGCAACAAATATGTGT-GGGATTA--GTAGCGGATGAAGTGAACCCTTGACATGGCCACCTG--------------AAAAGAGTCATTCAAtata-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   762322 196 -  1162296 ----------------------ATCTAATCCATGA---AGATTTTATACACCTTGAAATCATAATACCACTTGT--------CTTGTGCTCTT---CTGACTAAAAGAAC-----------------------------------ATAGTAATCCGTGTA--------GGCActtga-----------agaggaagaagtcg--------CAGCTTATTGCAACATATATATGCGGGGATTA--GTAGT---TGAAGTGAATCATTGACATGGGCACCTG--------------GATAACACAGGTCAATCTA-
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold548     39457 142 -    67506 -------------------------------------------------------------------------------------------------------------------------------------------------AATATAATCCGCAAAATTAGATGAGCTCTTG------------------AAAAGTCGCTTAGCATTGCATTATTGCAACATATATAAGG---GATTA--GCAGT---TGAAGTGAATCATTGACACGGTCACCTGGAAAGAATATGAG-AATCAATAGGGTCATTCTGA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       255096 271 +   783054 aatttcagaaaaaaaatcccatcTCAAAGtcctttttgagatttcatgATTTCTTGTTCCACTG-ACTTATTAT--------TCCATAGTCTG----CACCCACAAGAAAACATTAATGAGACAAGAAACTACATTCATGGTGTAGGCATAATCCGGGGAATAAGATGGGTACTTGA--------------TGAAGAAGTCG--------TGGATTATTGCAACATATACATGG-GAGATTAGTGCGGG---TGAAGTGAATCATTGACATGATCACCTG---CCCTTATGAG-AATCATTTGGTTCATTCTGA
i caePb3.Scfld02_62     I 114 C 0

a score=-3281.000000
s ce10.chrX              1076747 23 + 17718866 TACAAGAGCTTCTCTTTCTGTTT
s cb4.chrX              21412211  1 - 21540570 -t---------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     39599  2 -    67506 TT---------------------
i caeSp111.Scaffold548  C 0 I 4
s caePb3.Scfld02_62       255367 23 +   783054 TTTGTGtgcttcgttttcttttt
i caePb3.Scfld02_62     C 0 I 358
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=0.000000
s ce10.chrX              1076770 4 + 17718866 TGTG
e caePb3.Scfld02_62       255390 358 +   783054 I
e cb4.chrX              21412212 0 - 21540570 C
e caeSp111.Scaffold548     39601 4 -    67506 I
e caeRem4.Crem_Contig24   762518 1 -  1162296 I

a score=-567.000000
s ce10.chrX              1076774 53 + 17718866 ACCGGTTTTGGAAGAAGACGCTGTAGTATGAGGCTAGGGAAACCCAAAAAGTT
s cb4.chrX              21412212 10 - 21540570 -------------------------------------------ccaaaaattt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeSp111.Scaffold548     39601  4 -    67506 I
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=0.000000
s ce10.chrX              1076827 54 + 17718866 GGGAGATTACAGCAAGAAATTTCACGAATGTTTGAAAAAAAATCTTGAACATTG
e caePb3.Scfld02_62       255390 358 +   783054 I
e cb4.chrX              21412222  0 - 21540570 C
e caeSp111.Scaffold548     39601  4 -    67506 I
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=-1338.000000
s ce10.chrX              1076881 48 + 17718866 TGCTAGACTACTACACAAAACTAGCATTCTAGGCCATGTACCTACCTA
s caeSp111.Scaffold548     39605  4 -    67506 TGCT--------------------------------------------
i caeSp111.Scaffold548  I 4 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e cb4.chrX              21412222  0 - 21540570 C
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=-4127.000000
s ce10.chrX              1076929 89 + 17718866 ATTCTCTGTACCTTTAAGGCATGTGCTACATAACTACCAAATCAAAAACCGTGTGCAGCCTTGGTGCAGAGCT--TAGATTTTTAAGTCCA
s cb4.chrX              21412222 19 - 21540570 --attc---------------------------------------------------------------agCT--CGGATTCTAAA-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     39609 27 -    67506 -TTCTC---------------------------------------------------------------Tgcttcttgattttcaattcca
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=-2203.000000
s ce10.chrX              1077018 92 + 17718866 AAAGCTTAGCCAGTTGCATAAATATTAAAGTCAAATGTTCAAAGGAAATAATATTCTGACCCGTGCTAATGCAATATTTGGTCAGTGCCAAT
s cb4.chrX              21412241 14 - 21540570 ----------------------------------------------AAGAATTTTCTTAt--------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeSp111.Scaffold548     39636  0 -    67506 C
e caeRem4.Crem_Contig24   762518  1 -  1162296 I

a score=-64.000000
s ce10.chrX              1077110 12 + 17718866 GAAAATCTCC---------AT
s cb4.chrX              21412255  8 - 21540570 ----atctcc---------aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   762519 21 -  1162296 GAAAATCTGCTTGTGTGATGT
i caeRem4.Crem_Contig24 I 1 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeSp111.Scaffold548     39636  0 -    67506 C

a score=12901.000000
s ce10.chrX              1077122 122 + 17718866 TTTCTAATGAATTTTACGATTTGCAAACAACAAACATTCCAGACAGATG--------------CGCGA-AATGAGATGGCTGCCTGCTACCG--TA-GTGCTTTGTTGA----TTTAACAC----ACATTTCGCTTCAAGCGTTTTGG------
s cb4.chrX              21412263 128 - 21540570 ---tttttcaaatttacgaTTTGCAAATAGAAAA--------GCAGATGCGCGAAATGGGAATTACCAGAATGAAA-ACCTGGCAGCTACCG--TATTCGTTTTGTTTG----TTCAGGATTCGTAAATTTCGCTCCAAGCGTTTT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   762540 121 -  1162296 ---CTGCTGAATTTTACGATTCGCAAACAAAAAA--------GCAGATGTGAGG---------CGCCA-AATGAAA----TAGGGGCTACCG--TATACGCTTTGTTTGCTTTTTCTGGATATGTGTATTTTGCTTCAAGCGTTTTAG------
i caeRem4.Crem_Contig24 C 0 I 468
s caeSp111.Scaffold548     39636 119 -    67506 ------tttcattttacgATTtgcaaatagaaaaagagagtggCAGATG--------------CGCCAAGATGGGA----------CTACCGTATATTTGTTCTGTTTGCCTAGTTGGAATG---ACATTTTGCCTCAAGCGTTTT--TCTTGG
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I

a score=-7388.000000
s ce10.chrX              1077244 158 + 17718866 TGTTTA----AGAAATTGCGATTTGAATTTGGAAAAAAGGT---------TCAAATCAAAGAGAATTTTAGCAAGAAGCTTAGAAAATTCACGTAATGTATGCACACTAATTGATAAGAACACAGG-ATAATTTGGTAGGAGC---TTTGTTTCAAACTTCTTAAA--------AACCAATTT-
s cb4.chrX              21412391 129 - 21540570 ----------AGACGTTGCGGGTGGAGAAGATATGAGAAAT-----------------------TGCAGtgaaccaaaatttga----------aatgcaCAAATTCGCA---ACAAGAAAACATACAGAATCCGGAAAGATTGCTTTTATGTCGGA----TCATA-----TTGAAACACATTC
i cb4.chrX              C 0 I 81
s caeSp111.Scaffold548     39755 158 -    67506 TTCTTTCATGGGATCCTGGtcatgaaaattttgtaagAAATATGTCGACTactcatcagaaaaaaactatgaaaaaaaattaag----------aatctGTAAGCATGAT---ACCCGAATTTAAGCAGGATTTTGAA--------TCtgtgtgaaa----agaaaaacgtatgaactaaatt-
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeRem4.Crem_Contig24   762661 468 -  1162296 I

a score=-410.000000
s ce10.chrX              1077402 133 + 17718866 CTTCACAAAAAAGGTCCAGAGCAATCAAAAAAATGTTTTCCAACAAAATTAAAAAAAAA-----ATCATTATGAAACAAAT-TAGTAACTTGCCTCACTAAAAATGAGTTAACGCATTTTCAATATTTTATTTCCACAG
s caeSp111.Scaffold548     39913 117 -    67506 tttca----aaaagtc--------------attttttttcttataacaatgaaaaagaattggcATTCGTTTTACGCAATTCTCATCAACCGCGTCCATCAAACTGCGGGAAggctctctc----ttctctttcttgaa
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e cb4.chrX              21412520  81 - 21540570 I
e caeRem4.Crem_Contig24   762661 468 -  1162296 I

a score=-1041.000000
s ce10.chrX              1077535 6 + 17718866 AATCTT-
s cb4.chrX              21412601 6 - 21540570 AGTTAT-
i cb4.chrX              I 81 C 0
s caeSp111.Scaffold548     40030 4 -    67506 ---GATC
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I
e caeRem4.Crem_Contig24   762661 468 -  1162296 I

a score=-6605.000000
s ce10.chrX              1077541 54 + 17718866 ATGT----AATGCGCGAAGCTTCCTGACACCCTTATAGGCAGATGTCTC----CAATA---TGTC
s cb4.chrX              21412607 44 - 21540570 AGGT----TATTGGCGTGGCTTCTCAAACTCA-----------------TAAACAAAATTATGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   763129 59 -  1162296 ATGTGTCCTATCCGCATTTATTGCCACCCTCAAC-----CAGATGCCCCTTGTCAAAATC-TGCC
i caeRem4.Crem_Contig24 I 468 C 0
s caeSp111.Scaffold548     40034 40 -    67506 ---------------GATTCTTTCTAAAAGCA---------GATGTGACATGTCAAGAAC-TGTC
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       255390 358 +   783054 I

a score=51509.000000
s ce10.chrX              1077595 307 + 17718866 AATCTTT--CAGGCTATATGGGAAGCGTTGCCGGAGATGCATGACACTGCTTCTGCCAACTGACATTGTCCATCGCGTACATTTTATGTACTATCATGCGCAATGTTTCAGCTGCTGTTCCTGTCAACGACCATTTAATCTGGTGAGTTGGTTTTAGATAAAATATTGTGATTTAAGTTTTCAATCGTTTTTCAAAATGTAAGTGAATAATATTTCACATTTTACCTGTGTTACCCTGGACTTTTGGAAACTCCCTGCGGAAAGAGCTGACCTATAGGCTCCCTTTATGTTGATTTTCTGTAAAATGTG--------
s cb4.chrX              21412651 167 - 21540570 ATTCATTACCAGGTTATTTGGAAAACGTTGTCGAAGATGTATGACAGTACTTTCTTCAACCGACATCGTGCATCGCGTTCATTATATGTACTATCACGCCCAATGCTTCAACTGCTGTTCTTGTCAAGGACCATTCAACTTAGTGAG------------TAGATACAGAGaatgc-----------------------------------------------------------------------------------aaaa-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   763188 163 -  1162296 AATCTTT--CAGGTTATTTGGGAAACGATGCAGAAGATGTATGATACTGCTCTCCCCTACTGACATCGTTCATCGTGTTCATTATATGTACTACCATGCGCAATGTTTCAGCTGCTGCTCTTGTCAAGGACCATTTAATTTGGTGAGT----------TTGGAAACATTATGTTC----------------------------------------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     40074 187 -    67506 AATCTTT--CAGGTTATATGGCAAACGATGTAGGAGATGCATGTCAGTTCTTGTCTCTACTGATATTGTGCATCGTGTACATTACATGTACTATCATGCTCACTGCTTTAGCTGCTGCTCTTGCCAGGGGCCATTCAATCTTGTAAG------------CAAATGCAAGAATGtc-----------------------------------------------------------------------------------ggaaaattttg-------------------------ttttcgatcAACGTG--------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       255748 203 +   783054 aattttt--caggttaTACGGAAAACGCTGTCGAAGGTGTACTGCAATCCTTCTTCCAACTGACATTGTTCATCGAGTACATTATATGTATTACCACGCTCATTGCTTCAGCTGTTTGTCCTGTCAAGGACCTTTTAATTTGGTAAG------------GAAttatcctaatttt-----ttgatc------taaaa-------------------------------------------------------------GGAATAATATG-------------------------TGT---AGTTAtgtgaaaattcg
i caePb3.Scfld02_62     I 358 C 0

a score=-16567.000000
s ce10.chrX              1077902 110 + 17718866 ATTTGTAAGGAATAACTATTTCCTAATTCAGGAATTAAAAGTCTGAGCACTGAAAACGTTTAGTAATACTTGAAAAAATATTGGAGCTTATTTAATTATCAGGACTAACT
s cb4.chrX              21412818  20 - 21540570 ---aaggaaataaaacCGCATTT---------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   763351  15 -  1162296 ---------gttcaacaatttttg--------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       255951  49 +   783054 ------------aaactatttccgaa------aattaa--------------------cttaat----ctcg----aatttt-----ccattcattcatt----------
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     40261   0 -    67506 C

a score=212949.000000
s ce10.chrX              1078012 537 + 17718866  
s cb4.chrX              21412838 519 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   763366 520 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     40261 527 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       256000 533 +   783054  
i caePb3.Scfld02_62     C 0 I 46

a score=-561.000000
s ce10.chrX              1078549 2 + 17718866 TT-
s cb4.chrX              21413357 2 - 21540570 TT-
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig24   763886 2 -  1162296 tt-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     40788 2 -    67506 -TA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       256533 46 +   783054 I

a score=-1820.000000
s ce10.chrX              1078551 6 + 17718866 -----GAAGAG
s caeRem4.Crem_Contig24   763888 6 -  1162296 atctgg-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     40790 6 -    67506 ---TAAAAG--
i caeSp111.Scaffold548  C 0 I 34
e caePb3.Scfld02_62       256533 46 +   783054 I
e cb4.chrX              21413359 63 - 21540570 I

a score=315.000000
s ce10.chrX              1078557 13 + 17718866 AATAGGTATAGAT
s caeRem4.Crem_Contig24   763894 13 -  1162296 aaaatttacaaat
i caeRem4.Crem_Contig24 C 0 I 17
e caePb3.Scfld02_62       256533 46 +   783054 I
e cb4.chrX              21413359 63 - 21540570 I
e caeSp111.Scaffold548     40796 34 -    67506 I

a score=0.000000
s ce10.chrX              1078570 651 + 17718866  
e caePb3.Scfld02_62       256533  46 +   783054 I
e cb4.chrX              21413359  63 - 21540570 I
e caeSp111.Scaffold548     40796  34 -    67506 I
e caeRem4.Crem_Contig24   763907  17 -  1162296 I

a score=302.000000
s ce10.chrX              1079221 2 + 17718866 TT
s cb4.chrX              21413422 2 - 21540570 TC
i cb4.chrX              I 63 C 0
s caePb3.Scfld02_62       256579 2 +   783054 tt
i caePb3.Scfld02_62     I 46 C 0
e caeSp111.Scaffold548     40796 34 -    67506 I
e caeRem4.Crem_Contig24   763907 17 -  1162296 I

a score=176181.000000
s ce10.chrX              1079223 694 + 17718866  
s cb4.chrX              21413424 664 - 21540570  
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig24   763924 695 -  1162296  
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold548     40830 574 -    67506  
i caeSp111.Scaffold548  I 34 I 42
s caePb3.Scfld02_62       256581 648 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-1780.000000
s ce10.chrX              1079917 1 + 17718866 --T
s caeRem4.Crem_Contig24   764619 1 -  1162296 -T-
i caeRem4.Crem_Contig24 C 0 I 169
s caePb3.Scfld02_62       257229 1 +   783054 a--
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21414088 79 - 21540570 I
e caeSp111.Scaffold548     41404 42 -    67506 I

a score=-4602.000000
s ce10.chrX              1079918 550 + 17718866  
s caePb3.Scfld02_62       257230 350 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21414088  79 - 21540570 I
e caeSp111.Scaffold548     41404  42 -    67506 I
e caeRem4.Crem_Contig24   764620 169 -  1162296 I

a score=-195.000000
s ce10.chrX              1080468 19 + 17718866 --AGATTTTGGCAACTTGACA
s caeRem4.Crem_Contig24   764789 19 -  1162296 --AGATTGTGATAGCTTCAAA
i caeRem4.Crem_Contig24 I 169 I 2
s caePb3.Scfld02_62       257580 14 +   783054 aaATATTCTGAACA-------
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21414088 79 - 21540570 I
e caeSp111.Scaffold548     41404 42 -    67506 I

a score=-1142.000000
s ce10.chrX              1080487 17 + 17718866 ATTTTAAAAACTTTGAA--
s cb4.chrX              21414167 17 - 21540570 atttaaaaaactattaa--
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig24   764810 15 -  1162296 CTTCAAAATAATGTT----
i caeRem4.Crem_Contig24 I 2 C 0
s caePb3.Scfld02_62       257594 17 +   783054 --GTGAAAAGAAGTAGACG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     41404 42 -    67506 I

a score=71931.000000
s ce10.chrX              1080504 264 + 17718866 AACTTACATTAAAGTTATCACTCTTTGCCCATACAGCTCCGTCGAATCCAAGAATGGCAGCCTTGCTCACATTTCCAGACCCGATAAGGTTATTGTTGATAATATCAGACCACGACATG-TTTTCGTTTTGTGTGTGCTGAAAACTT-----------TGA-A--------------AGTAAAAG----------------------------------TGAAAG-------------TCTAGAAGCT-----C-------------------AAAACGTGGAAAACGG------------------GGCACAATTGTGCAG-TGCGTGGGAGAAAGAGAGAGAGATATGGA-AACAGATGACGCT--------TGGTTTCTGA-----CGTTTT
s cb4.chrX              21414184 292 - 21540570 aaCTTACATTGAAATTATCACTCTTAGCCCAGATAGCCCCGTCAAAACCAAGAATGGCGGCTTTGCTAACGTTACCGGACCCGATTAGGTTATTATTGATAATATCCGACCACGACata-------gtttctg------aaaaacttcacTGAGACAATGG-A------------AAATTAACAG-----GACGACAATAGCTTAGA------------AAAGAT-------------TTCATGAACCagtctc-------------------aaaaacaaaaagataaatgaaaaaaa--------ggtgCAGTTGTTTTG-TGCGTGGGAGGAG-------------AGACAACAAGTGACGCC-CTTCTCCTGGTTTCTGA-----CGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   764825 336 -  1162296 AACTTACATTGAAGTTGTCACTCTTTGCCCACACAGCTCCATCAAAACCAAGAATGGCGGCTTTGCTCACATTTCCAGAACCAATAAGATTGTTGTTGATGATATCGTTCCAGGACATA----Gtggtttcta------aaaaaataatatttggaactga-attttttcaatttaaattgAAAGAAGTTGAAAGCAACAATGAAGA------------CAAAACAACGATTGAGGGATACCTAATCTTTTCTCTTATTGACACTTAGAacagaagaatgaaaagacaa--gaaaaaaa--------ggtGCAGTTGTTTTG-TGCGTGGGAGGAG-------------GGA-AACAAATGACG------CTTCTGGTTTCTGA-----CGTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     41446 301 -    67506 AACTTACTTGGAAATTATCACTCTTAGCCCAAACAGCACCATCAAACCCAAGAATAGCAGCTTTGCTTACATTTCCAGACCCAATCAAGTTATTGTTAATGATATCAGCCCACGACATGATTATtgatttctc------tgaaactt-----------tAATA------------TTATTGAAACAATCTAACCTttg----acaagttttttttttcaaaaaat-------------gtcaaggatt-----c-------------------gaaaaatgaaaaatag--t-----agCGTGTGAGTGTGCTGTTGTTTTGTTGCGTGGGTAG----------------AA-AGCAAATGACGCCGCACCCTGTGCTCTCTGAGCAGCCGTTTT
i caeSp111.Scaffold548  I 42 C 0
s caePb3.Scfld02_62       257611 297 +   783054 AACTCACATTGAAGTTGTCACTCTTAGCCCAGACGGCTCCATCGAAACCGAGAATAGCAGCCTTGCTCACATTTCCAGATCCGATGAGGTTGTTGTTGATGATATCGGACCACGACATT----TTGCTATCTG------AAATACTT-----------TGA-A------------CAGTTAAGAGTAGCCGAAATTGAAGACACAAAT-----------AAACAC-------------GTAAAGGTTCAGTtgt-------------------gaaatagaaaaaacag--caaaaaaatatgtgTGCGTGCAGTTCAATTG-TGCGTAGgaggag-------------aaa-aacaaatgacgCCTAGGTCCCTGGTTTCTGAG----CGTTTT
i caePb3.Scfld02_62     C 0 I 441

a score=4032.000000
s ce10.chrX              1080768 55 + 17718866 CCAAAAAATCATGAA----GAAATTATTTTGAAATA---GCAGTTTGGAGAGATGAGTAATG
s cb4.chrX              21414476 38 - 21540570 ----------CTGAA----CAAAtcgttttgaaatc----------ttgaGGATGACTAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   765161 39 -  1162296 ----------CTTGA----cgaattatttcgaaatt---------ggCGGGGATGAGTAATG
i caeRem4.Crem_Contig24 C 0 I 274
s caeSp111.Scaffold548     41747 52 -    67506 ----------CTTGGCATCcaaattatttcgaaatatagGTATAGGTCAGTGATGAGGAATC
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       257908 441 +   783054 I

a score=-991.000000
s ce10.chrX              1080823 15 + 17718866 AACACA---TGTTGATTA---
s cb4.chrX              21414514 15 - 21540570 AAGATG---TAAAAATTA---
i cb4.chrX              C 0 I 655
s caeSp111.Scaffold548     41799 21 -    67506 AAGAAGTGTTGACGGCTAAGA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       257908 441 +   783054 I
e caeRem4.Crem_Contig24   765200 274 -  1162296 I

a score=684.000000
s ce10.chrX              1080838 10 + 17718866 GATATCTGAT
s caeSp111.Scaffold548     41820 10 -    67506 GATATTCGAT
i caeSp111.Scaffold548  C 0 I 370
e caePb3.Scfld02_62       257908 441 +   783054 I
e cb4.chrX              21414529 655 - 21540570 I
e caeRem4.Crem_Contig24   765200 274 -  1162296 I

a score=0.000000
s ce10.chrX              1080848 864 + 17718866  
e caePb3.Scfld02_62       257908 441 +   783054 I
e cb4.chrX              21414529 655 - 21540570 I
e caeSp111.Scaffold548     41830 370 -    67506 I
e caeRem4.Crem_Contig24   765200 274 -  1162296 I

a score=1210.000000
s ce10.chrX              1081712 117 + 17718866 GGTCAGTTTTGCAATTTACCACTTTTTGATATTTTCAGAAAATACGGCAATATGGGGAAGACGTCATAAATAAAAACAATTCGAAAAAATTAACAAAAAGTGAGAAATCTAACTTTC
s caeRem4.Crem_Contig24   765474 103 -  1162296 gataaatttcagaaattatcacatttaaaca----caaaaaat----cagaatgatGAAAACATATCAAGAAAAAAC----CACAAGATTT--CTAAagattaaaaatgaaacaatt
i caeRem4.Crem_Contig24 I 274 C 0
e caePb3.Scfld02_62       257908 441 +   783054 I
e cb4.chrX              21414529 655 - 21540570 I
e caeSp111.Scaffold548     41830 370 -    67506 I

a score=437.000000
s ce10.chrX              1081829 94 + 17718866 AAAAAGTTTC------AATAAACGTTCGTTTCAAAACCGGGACGCAAAGAGATCGGAAGATATTTGCGTGGGGTTCGTTGCTCGCTGAGCCTCTGTTGGA
s caeRem4.Crem_Contig24   765577 80 -  1162296 gaaaa-----------gatCAATTTCAATAGAAAGATAAAATCGAAAGAGTTTCTGACGGGGGTTCACTGG----CTGAGCTCAG---ACTTC--TTGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       258349 96 +   783054 aaaaagtttttttcacgaTCAatgtcaaaatcaaaattaaaacGGAGAA--TCTAGAAAGAATTTGACTGGCCTCCCATGCTCAGGAAACTTC--TTGCA
i caePb3.Scfld02_62     I 441 C 0
e cb4.chrX              21414529 655 - 21540570 I
e caeSp111.Scaffold548     41830 370 -    67506 I

a score=-391.000000
s ce10.chrX              1081923 8 + 17718866 --CATAAAAT
s cb4.chrX              21415184 8 - 21540570 CACATATC--
i cb4.chrX              I 655 C 0
s caeRem4.Crem_Contig24   765657 6 -  1162296 --CATAAT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       258445 6 +   783054 --CATTAT--
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     41830 370 -    67506 I

a score=59324.000000
s ce10.chrX              1081931 259 + 17718866 GTGAGAC-TAAGA--CTGAATTGCCGCTCAATAG---------C-----CGTAAGACACCAG-TTTGTCTCCTTGCCTCCCGTGTGTGTGTGTGTGAGAACAGTGTGTTGATCCTGAAGAGAGCGC----GCGCCGATT-G---------GAACAGTGTACGGGGGAATGAAGTACCGCAGATAGATGAAGGGCGGGAGAG----GAGTCGC---TGTGGCAGAGGAGAGCCTATCCCCGGGGCAGAACTCGACAATCATAGTGTAAAGC-----TGTCGTTT-GCTC-----------TATGTCTTTTTCTCTC-----
s cb4.chrX              21415192 255 - 21540570 ACGAGAC-TCAGACTCTGAATTGCTGCTCAATAGCCGGCCGCCCCCTTTCCTAAGACACCAGTTTTGCC------------------------TTGGGAACAGTGTGTTGATCCTGGAGAGAGGGCA---GAACCGATC-GC-AAAGTC-GAACAGTGTAC---AGAATGAAGTATCGCAGATAGTGGAGCGGTGGGAGAGAGGAGAGTCACCCTCG------------------------GGCAGATCTTGGCAATCC-AGTGTAAAGCGTCCGTGTTGTTTCGCCAGTG--ATG---TGTTGc-tccctttttctctc
i cb4.chrX              C 0 I 691
s caeRem4.Crem_Contig24   765663 208 -  1162296 GTGAGAC-GGAGA--CTGAATTGCCGCTCAATAG---------------CCTAAGACACCAG-TTTGCC------------------------GTAAGAACA--GTGTTGATCCTGGAGAGAGGGCA---GAGCCGATT-GC-AAAGTC-GAACAGTGTAC---AGAATGAAGTACCGCAGATA-----------GGAGAGTGGGGAGGCAC---CG------------------------GGCAAAACTCGACAATCAGAGTGTAAAGCTTCCGTGCCGTTT-GCCA-------------CGAC-TCTCCTCTT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     42200 235 -    67506 GTGAGAC-TAAGA--CAGAATTGCCGCTCAATAG---------CCTCAGCCTAAGACACCAG-TTTGCCCC---------------------GGCGAGAACAGTGTGTTGATCCTGGAGACAGAGCAGAGGAGCCAATC-GCAAAAGTC-GAACAGCGTAC---AGAATGAAGTACGGCAGATA------------GAGAG--------AAA---CGCGGTGGA-------------TGGAGGCCAAACTCAACAATCATAGTGTAAAGCTTCCGTGCCGTTT-GCTTGGGCAAGA---TGGGTC-CTgcctctc-----
i caeSp111.Scaffold548  I 370 C 0
s caePb3.Scfld02_62       258451 222 +   783054 GTGAGACAGAGGA--CCGAATTGCCGCTCAATAG---------CCTCTTCCTAAGACACCAG-TTTGCTCC---------------------GGTGAGAACA--GTGTTGATGTTGGAG--AGGGCA---GAGCCGATTGGCAAAACTCGGAACAGTGTAC---GGAATGAAGCACCGCAGATA------------AACGGCAG-GAGAAAA---CG---------------------GGAGGCTAAACTCGAC------AGTGTAAAGCTGCC---CCGTCT-CCTCGGG--AGGCTCTGTTTC-CTccctctc-----
i caePb3.Scfld02_62     C 0 C 0

a score=4499.000000
s ce10.chrX              1082190 53 + 17718866 ATTTGCTTTATCTGCAGGTTC--CACTGACGCGACGAAAACA--TTCAAGAGAGAGA
s caeRem4.Crem_Contig24   765871 42 -  1162296 --ATTCTGTGT-TGCGGCTTC--CACC--------GAAAACA--TCcaagagaaaga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     42435 49 -    67506 --ttttcttatgTGTTGCTTCTATACC-----CCGAAAAAcat-tcacagaaaaaga
i caeSp111.Scaffold548  C 0 I 256
s caePb3.Scfld02_62       258673 47 +   783054 --attttctgt-tgCGGCTTC--CACC-----CAGAAAAACAGATCCAAGACACAGA
i caePb3.Scfld02_62     C 0 I 11
e cb4.chrX              21415447 691 - 21540570 I

a score=-141.000000
s ce10.chrX              1082243 26 + 17718866 --AAGGGAAACGGATAGCCCCGCTCACC--------
s caeRem4.Crem_Contig24   765913 32 -  1162296 aagataGAAACGGATAGCT-TACTCACGGCACC---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       258731 26 +   783054 --AATCGATACGGATAGCT--------GGGATCACC
i caePb3.Scfld02_62     I 11 I 1040
e cb4.chrX              21415447 691 - 21540570 I
e caeSp111.Scaffold548     42484 256 -    67506 I

a score=803.000000
s ce10.chrX              1082269 31 + 17718866 GACGGCCATCGA-----AATTTCAAAAACTATTGAT
s caeRem4.Crem_Contig24   765945 34 -  1162296 GCCGGTCATTGATTGTGAAACTC--AAACTGTTGAT
i caeRem4.Crem_Contig24 C 0 I 484
e caePb3.Scfld02_62       258757 1040 +   783054 I
e cb4.chrX              21415447 691 - 21540570 I
e caeSp111.Scaffold548     42484 256 -    67506 I

a score=0.000000
s ce10.chrX              1082300 1876 + 17718866  
e caePb3.Scfld02_62       258757 1040 +   783054 I
e cb4.chrX              21415447  691 - 21540570 I
e caeSp111.Scaffold548     42484  256 -    67506 I
e caeRem4.Crem_Contig24   765979  484 -  1162296 I

a score=268.000000
s ce10.chrX              1084176 76 + 17718866 ATAGAGCTTATG-----CCCTAATAAACTGGACAATAAATAAAGTTTCAAAGTTAATTTTTTTTGTTTCAGTATGAAAAAC
s caeSp111.Scaffold548     42740 61 -    67506 ATAAAGTTCATGTTGAACACTTATAAA----ACGGTAAAAAAGGTgt-------aattttctat---------tcacaAAA
i caeSp111.Scaffold548  I 256 C 0
e caePb3.Scfld02_62       258757 1040 +   783054 I
e cb4.chrX              21415447 691 - 21540570 I
e caeRem4.Crem_Contig24   765979 484 -  1162296 I

a score=-377.000000
s ce10.chrX              1084252 6 + 17718866 CAACAA---
s caeRem4.Crem_Contig24   766463 6 -  1162296 ---caagag
i caeRem4.Crem_Contig24 I 484 C 0
s caeSp111.Scaffold548     42801 6 -    67506 ttacaa---
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       258757 1040 +   783054 I
e cb4.chrX              21415447 691 - 21540570 I

a score=-2133.000000
s ce10.chrX              1084258 26 + 17718866 AAAAAATAGTACGAAAAATGATTCTT------
s caeRem4.Crem_Contig24   766469 19 -  1162296 -------------agaaaaaagttaaaaatga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     42807 26 -    67506 ataaaatttcgGGAGAAATCGATTAA------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       259797 13 +   783054 -------------aaaaaataatgta------
i caePb3.Scfld02_62     I 1040 C 0
e cb4.chrX              21415447 691 - 21540570 I

a score=51339.000000
s ce10.chrX              1084284 343 + 17718866 --AAAAAACACACGACAAAAAAACTGAGGCAAGTTGGT----AGAGGTGTGAGAGAGAAAAACGTTTAGACA---AACAAAGAGG--CGTCCACCCGGAGACTTGCGAGAG-CCCTAAAACTATTAGAAAACGTGAAGGGGCCAATTTTTGAATTTCTGAAAAGATTGGGG-GAGGGAAAATACAAAGTAAAACGGTAGAAAAGAG-------AT---------TTTG-TAAAATGAAGATAC-ATGGAAATTGATACAGTCAAGATTACAGATTTTTGACTTGACAATCTA------------TTCATGAGCATTTGATACACTTTTGATGTTGGGCTTCAGAATGTGGCCAACACGGTCAGTAGCCAGTTCGATATCCTGAAAA
s cb4.chrX              21416138 323 - 21540570 --aaaatgaacacgA-AGTATTACTCAGGCAAGTAGGTTAAAAGAAGTATGGAAGAA-------ATTCGACAAAGAACAGTTGAGGACATCCACCC-GAGACTCGCTAGAATCTTT--CGCTACAAGTATTT---------CCATTTCACCAGAGTCGAAAAGGTATGAGATAAGGTAGCATTCAAAC-AGAGATG-AGACAAGA--------AT---------AGCA-TTAGAAAAGAACGGCAA--------TCACGATGAAGTCAGC----ATCTATTTCGAGATTTCACGC---------TTCATGGACATTAGATACACTTTTGAAGGTCGGTTTGAGAATGTGTCCAACACGATCGGTGGCAAGCTCGATATCCTGAAAA
i cb4.chrX              I 691 I 38
s caeRem4.Crem_Contig24   766488 310 -  1162296 ------aaaacacga-aGTAAAACTGAGGCAAGTTGGT----AGAGGTGTGAGagaa-------attcgacaaa-aacaaagaag--cGTCCACCC-GAGACTTGCGAGAG-CCCT--AACTACAAATATat---------ccaatttccaaaaacaaagaagattTGG---AGGCAAAAATACAGgcgagaaatg-agaaaatac-------aA---------AGTATTTAGGGAATCATAG-AT--------CTATCATTAATACAAC----TTTTGTAACCACTGGTTACGC---------TTCATGAGCATTTGATACACTTTTGACGGTCGGCTTGAGAATATGTCCTACACGGTCTGTGGCCAGTTCGATGTCCTAAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     42833 330 -    67506 AAGTGGAACACACGA-AATAAAACTGAGGCAAGGTGGT----ACAGAtgtgagagaaaa-----atttaacG---AACAAAGAAAT-TGTCCACCC-AAAACTTGGAAGAG-CCCT--AACTACAAATAAT------------GTTTTCCCAAAACTTGACG----------AAACAAAGATAAAAGAAAGGTTGG-GGAGAGGGGGTGGTGAATACAATAAAGAGTA-TGGAATTGGTATAA-AT--------CAGAAATTAAAGATAC-----TACAAGACTTCGATGTGAGCGTTTGTTTATTCATGGGCATTTGATACACTTTTGATATTGGGTTTCAGAATGTACCCTACACGATCTGTGGCAAGTTCAATGTCCTGAACA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       259810 287 +   783054 aattaaaaaaCACGA-AATGAAACTGAGGCAAGGT-GT----AGAGGTGTGAGAGAAGA--GTGACTCGACA---AACAAAGAAG--CGTCCACCC--GATCTTGCTGGAG-CTCT--AACT---AATAAT---------------------AAATCCAGAG----------GAGCGAATATACAGGCGAGAATCA-TTACAAAGT-------ATCCA------AATT-TGTGGTAGGTTTGA-A----------------CAAATAGAC------ACAGGAACAAGATCTAGGC---------TTCATGAGCATCAGAAACACTTTTGACGTTTGGCTTCAAGATGTGTCCAACGCGATCGGTAGCGAGCTcaatatcctgaaaa
i caePb3.Scfld02_62     C 0 C 0

a score=-1107.000000
s ce10.chrX              1084627 1 + 17718866 A-
s caeRem4.Crem_Contig24   766798 1 -  1162296 -T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     43163 1 -    67506 A-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       260097 1 +   783054 a-
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21416461 38 - 21540570 I

a score=-3269.000000
s ce10.chrX              1084628 37 + 17718866 --GGTACTTATCAGTTGATCTCCAGATTGAAAATTCAGT-----
s caeRem4.Crem_Contig24   766799 36 -  1162296 ATTCGATTTAAC-ATTGATCCGGGTATGAAAAATT--AT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       260098 37 +   783054 -tgtgagtG----ATTGA--CAAGTCAGAAAGGTTTAATTCGGT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21416461 38 - 21540570 I
e caeSp111.Scaffold548     43164  0 -    67506 C

a score=91.000000
s ce10.chrX              1084665 1 + 17718866 T
s caeRem4.Crem_Contig24   766835 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       260135 0 +   783054 C
e cb4.chrX              21416461 38 - 21540570 I
e caeSp111.Scaffold548     43164 0 -    67506 C

a score=0.000000
s ce10.chrX              1084666 237 + 17718866 GAAATAAGGAGATGACCACTAGTTTTAGGTTTAATTTTAGACTAGGTAACTACAAAAAATATCGCATAGTGATTTAACTCTGAACTCCTGAAAATTCTCCAACTCTGAACCTTCGGTAATATTGCTAGCGCATTTTTCCACTATTTAGAAGGCCCAAAAAGTCATAGGTAGGAAAACATTCTAGGAGACTTTTGAAAATAAAACTAGTTTTAAAAGAATATCTTAAATCTTGTGAAG
e caePb3.Scfld02_62       260135   0 +   783054 C
e cb4.chrX              21416461  38 - 21540570 I
e caeSp111.Scaffold548     43164   0 -    67506 C
e caeRem4.Crem_Contig24   766836   0 -  1162296 C

a score=-277.000000
s ce10.chrX              1084903 75 + 17718866 AAGTTGGATGAAAAAACCCTTTCAGATTTTTGAATTTTCTGAGTTCTTCCAAATAATAGTATTAAATCAGCACTG
s caeSp111.Scaffold548     43164 33 -    67506 AAGCTATACGAAAAAACCTGTTTAAA------------------------------------------AGAGCTT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       260135  0 +   783054 C
e cb4.chrX              21416461 38 - 21540570 I
e caeRem4.Crem_Contig24   766836  0 -  1162296 C

a score=93947.000000
s ce10.chrX              1084978 162 + 17718866 ACCTTTATCAACTCCGAATGACTCATCAACATTTTTGAAACAGTGTCATCATCACCAATGTTGAATGAGGCAAGTGAAGAGACTTCCGAGTTGTCAGATCCATCAGAAAGGCCAACTGGACGTGTGTGATAGCTGATGTCTGCTTCTTCACCGTGTCTGaaa
s cb4.chrX              21416499 162 - 21540570 ACTTTAATGAGCTCAGAGTGACTCATGAGCATTTTAGAAACGGTGTCGTCGTCACCAATGTTGAACGATGCTAATGACGAAACTTCGGAATTGTCCGATCCGTCAGAGAGTCCAATCGGTCGAGTGTGGTAGCTGATGTCCGCTTCGTCAACATGTCTAAAG
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig24   766836 162 -  1162296 ACCTTGATGAGTTCGGAATGACTCATTAGCATTTTCGATACGGTGTCATCATCTCCAATATTGAATGAGGCAAGAGAAGAGACTTCGGAGTTGTCAGATCCATCTGAGAGTCCAATTGGACGGGTATGGTAGCTAATGTCTGCTTCTTCGCCGTGTCTGGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     43197 159 -    67506 ACCTTTATAAGTTCTGAATGACTCATTAACATTTTCGATACAGTATCGTCATCACCAATGTGAAATGAAGCCAAAGAAGATACTTCGGAGTTATCAGATCCATCAGATAGGCCAACAGGGCGAGTGTGGTATGTTATGTCGGCTTCCTCGCCATGCCTA---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       260135 162 +   783054 ACCTTGATCAATTCAGAATGGCTcatcaacattttcgaaacagtatcGTCATCTCCGATGTGGAACGAGGCAAGTGAGGACACTTCAGAGTTATCAGACCCGTCAGAAAGACCGATTGGGCGAGTATGATAAGTGATGTCGACAACTTctccatatctgaaa
i caePb3.Scfld02_62     C 0 I 367

a score=-5179.000000
s ce10.chrX              1085140 6 + 17718866 tttttt-----------
s cb4.chrX              21416661 8 - 21540570 -----TGTGACCA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   766998 5 -  1162296 -----C---AAAA----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     43356 6 -    67506 -----------TATTTG
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       260297 367 +   783054 I

a score=-5572.000000
s ce10.chrX              1085146 32 + 17718866 aattattttttt---------aaatatCATCTTTAAATTTG
s cb4.chrX              21416669 29 - 21540570 AATCAGCGTTTT--------AGCTTTTTCTCTAAAAG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   767003 41 -  1162296 GATAATTgttctatgaaaaaaaaacatgatctTAAAGTTTG
i caeRem4.Crem_Contig24 C 0 I 294
s caeSp111.Scaffold548     43362 32 -    67506 ---AATTGATTAAAATGTTCAAAccttgattttta------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       260664 27 +   783054 aataatttattcacACACTCAAAATTT--------------
i caePb3.Scfld02_62     I 367 C 0

a score=216951.000000
s ce10.chrX              1085178 595 + 17718866  
s cb4.chrX              21416698 541 - 21540570  
i cb4.chrX              C 0 I 216
s caeRem4.Crem_Contig24   767338 544 -  1162296  
i caeRem4.Crem_Contig24 I 294 C 0
s caeSp111.Scaffold548     43394 498 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       260691 531 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-3299.000000
s ce10.chrX              1085773 17 + 17718866 AA-----ATCAGGGTTTTTTGT
s caeRem4.Crem_Contig24   767882  1 -  1162296 ----------A-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     43892 17 -    67506 TA-----ATCagtgttttctgt
i caeSp111.Scaffold548  C 0 I 102
s caePb3.Scfld02_62       261222 19 +   783054 GAGGTTTATGAGAGGTTTC---
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21417239 216 - 21540570 I

a score=-14158.000000
s ce10.chrX              1085790 381 + 17718866 AAACAGTAGCGTTCATAGTTTGAATTTGAGAAGAAGAGT----TCCAAAATTGTATAAAACTTTGAAGTTAGTAGTA-AGTCAATGCTTTTTTGGTACTGTAGAGTTATTATAAAATTACTGCAGATGTATACATTGGTTTGGTGAAGTACTGTACAAGCAATTTTGA-------AAATAAGTCTCAAACTCTGAGCCAAGTCTACATTCCTATGCAATTTGTAACATGCTGTCGTAATACTGATACGGTAGTACTAATAGTACTGTAGAAATACTGTAGTAAGGTTTTTTGAAAAAAACTATCGAGTTAATATTGTATTCTTATTAATTGGTACTGTCAATTGTTCTGCATTTTTCAATAATATTTTAGT--------GAAGACTTTTAAATTTTCCTAA
s caeRem4.Crem_Contig24   767883 239 -  1162296 ---TGAT--------TGGTTTGAAACTAATAATaggagatttttcgaaaa------accattttcattttttttgtctggaaaGACGTTTTACCGC------------------AGTTGCT----------------TTTTTACATATGGCAATGCTACTATTATT---------AACCTGATTTCCGAC---------------AATTTCAGTG-----TTTAA------GTCATAAA---------TTGGTAGTAAT-GTAC--------------------------TCaaaaaaaC------------------ATCTCGTTAG--------------CATTTTACACGTCGAATCTAACTCTTATT--------GAACATTTTGGATATCTGCAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       261241 281 +   783054 GAACTGT--------CATTTTTAGCCTGAACATA---------TCGGAAA------ACCATTCTCAGGTTGTTTGCCTAGGTTGTGACTTTGAGGTTCAGAATATCCGATAAAAAGTATGT----------------ATTTGTCATGAATCAGAGCAGTCTTTTTTGCAGCTTACAAACAAATCACGAAA---------------AAGTTCTGTG----------------GCAATAAAA-----ACGGTTCTAATAAT-GAgcgg---------------------atttcaaaaatcc------------------tttcTATTAG--GGCAcgatttatgattttttgtttcaga---aatttctattttggtGTCAgtaatgttgaaatttttccag
i caePb3.Scfld02_62     C 0 I 58
e cb4.chrX              21417239 216 - 21540570 I
e caeSp111.Scaffold548     43909 102 -    67506 I

a score=-1212.000000
s ce10.chrX              1086171 100 + 17718866 TCTGTTTGTTGGTACCAATTTTTTTTCAGATTAAAAAATTGATTTTACTTTCTTCTTCCTAGCTCAACAACTTCGCATTCTTCTCCAGTTTTTTTTTTCA
s caeRem4.Crem_Contig24   768122  67 -  1162296 CC---------GCCCAAGTCGTATTTCAAGTT----AACTGGTT-----------TCCCCAGAACTAAAACCAT---TTCCACACCAAAATTTT------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       261522  58 +   783054 I
e cb4.chrX              21417239 216 - 21540570 I
e caeSp111.Scaffold548     43909 102 -    67506 I

a score=-3256.000000
s ce10.chrX              1086271 73 + 17718866 GAATACGTTTTCAAGCATT--CTAATGGTCCCCCACCCCCAATAACTCTAACTTGTCCCATTTTTCATCTTAGAT
s caeRem4.Crem_Contig24   768189 53 -  1162296 -------------AGTATT--ATGAACATCCAAC-------AGAATTCCTTCATATCTATTTGGTTTTTTATCAT
i caeRem4.Crem_Contig24 C 0 I 9
s caePb3.Scfld02_62       261580 46 +   783054 ------------aaatatttcttgaaGATT-------------GATTTTtacatgaacattttttcttccg----
i caePb3.Scfld02_62     I 58 C 0
e cb4.chrX              21417239 216 - 21540570 I
e caeSp111.Scaffold548     43909 102 -    67506 I

a score=254.000000
s ce10.chrX              1086344 4 + 17718866 GTTC
s cb4.chrX              21417455 4 - 21540570 GCTT
i cb4.chrX              I 216 C 0
s caeRem4.Crem_Contig24   768251 4 -  1162296 ACCT
i caeRem4.Crem_Contig24 I 9 C 0
s caePb3.Scfld02_62       261626 4 +   783054 tcTT
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     43909 102 -    67506 I

a score=83330.000000
s ce10.chrX              1086348 141 + 17718866 ACCTGTTATCCTTCTCCATAGCCCTTATCTTCTCTGCCAAATGTAGCATCGCGTGAGCTTTGGACGCGTGCAATGACTCTGCCGCAGTTCGTTCTTCCTCCACTTCTCTGACCCTTTGAATATGATGATTGAGCACCTAGA
s cb4.chrX              21417459 141 - 21540570 ACCGGTTATCTTTTTCCATCGAACGTATTTTTTCTGCCAAATGGAGCATTGTGTGTGCTTTTGTTGCATGCAATGACTCAGCAGCAGTCCTCTCCTCCTCAACCTCTCGAACGCGCTGGATATGGTGATTAAGCACCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   768255 141 -  1162296 ACCTATTATCTTTTTCCATAGCTCTAATATTTTCTGCCAGATGGAGCATTGCATGAGCTTTTGATGCATGTAAAGATTCCGCCGCTGTCCTTTCCTCCTCAACCTCTCGGACTCTTTGGATGTGATGATTGAGCACCTaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     44011 141 -    67506 accGGTTATCTTTCTCCATTGTTCTGATTTTCTCTGCCAGCTGAAGCATTGCGCTTGCTTTAGAAGCATGTAGAGATTCAGCATCCATTCTTTCCTCTTCAACATCTCTTACTCTTTGAATATGATGATTGAGCACCTAAA
i caeSp111.Scaffold548  I 102 I 136
s caePb3.Scfld02_62       261630 141 +   783054 ACCTATTATCCTTCTCCATCGTCCTTATTTTCTCAGCCAGTTGAAGCATTGCGTGTGCCTTTGAAGCATGTAAAGACTCCGCTTCTGTTCTTTCTTCCTCCACGTCCCTCACCCGTTGAATATGATGATTGAGCACCTAAA
i caePb3.Scfld02_62     C 0 C 0

a score=4244.000000
s ce10.chrX              1086489 101 + 17718866 AACGGGATTTGTACTTTTTTTTTTGTTTTTTTTTTTGGTGGTTTGAAATTTACAATTTCACAATTCTCCTATTTATTTGCACATCTGGATGGTATTATCGG
s cb4.chrX              21417600  48 - 21540570 ----------------------------------------AAGTTAAGTTTAGA-------------TCTGTTTGTTTGCACATCTGGGTGAAATTAGCGG
i cb4.chrX              C 0 I 144
s caeRem4.Crem_Contig24   768396  48 -  1162296 ----------------------------------------ttttcacgtgaaaa-------------cttatttatttGCACATCTGGATAGTATTAACAC
i caeRem4.Crem_Contig24 C 0 I 13
s caePb3.Scfld02_62       261771  49 +   783054 ------------AC--------------------------GTTTCGAATG-AAA-------------GTTATTTATTTACACATCTGGTTCATATTAACGG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold548     44152 136 -    67506 I

a score=2847.000000
s ce10.chrX              1086590 32 + 17718866 GGGG--------------CATTTTGGCAAACTATTTTCATATGTGT
s caeRem4.Crem_Contig24   768457 41 -  1162296 GAGGTTTATCGTTTTTA-TATC----TAAACTATTTTCATATGTGT
i caeRem4.Crem_Contig24 I 13 I 143
s caePb3.Scfld02_62       261820 41 +   783054 -----CAGTCGGGTATAGTATCCCGTCAAACTATTTTCATATGTGT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21417648 144 - 21540570 I
e caeSp111.Scaffold548     44152 136 -    67506 I

a score=451.000000
s ce10.chrX              1086622 31 + 17718866 GTATGTGCCCTCCCTTAGTTTAATTTGGAAA
s caePb3.Scfld02_62       261861 25 +   783054 TTGTATG------CTGAGTTGAATTGCGAAA
i caePb3.Scfld02_62     C 0 I 37
e cb4.chrX              21417648 144 - 21540570 I
e caeSp111.Scaffold548     44152 136 -    67506 I
e caeRem4.Crem_Contig24   768498 143 -  1162296 I

a score=0.000000
s ce10.chrX              1086653 670 + 17718866  
e caePb3.Scfld02_62       261886  37 +   783054 I
e cb4.chrX              21417648 144 - 21540570 I
e caeSp111.Scaffold548     44152 136 -    67506 I
e caeRem4.Crem_Contig24   768498 143 -  1162296 I

a score=240.000000
s ce10.chrX              1087323 12 + 17718866 TGTAGTTTTCGG
s cb4.chrX              21417792 12 - 21540570 TGGAGGTTTTAC
i cb4.chrX              I 144 C 0
e caePb3.Scfld02_62       261886 37 +   783054 I
e caeSp111.Scaffold548     44152 136 -    67506 I
e caeRem4.Crem_Contig24   768498 143 -  1162296 I

a score=58.000000
s ce10.chrX              1087335 2 + 17718866 AC
s cb4.chrX              21417804 2 - 21540570 GT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       261923 2 +   783054 at
i caePb3.Scfld02_62     I 37 C 0
e caeSp111.Scaffold548     44152 136 -    67506 I
e caeRem4.Crem_Contig24   768498 143 -  1162296 I

a score=224.000000
s ce10.chrX              1087337 5 + 17718866 AAAAT
s cb4.chrX              21417806 5 - 21540570 ATTAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     44288 5 -    67506 aatat
i caeSp111.Scaffold548  I 136 C 0
s caePb3.Scfld02_62       261925 5 +   783054 gaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   768498 143 -  1162296 I

a score=51238.000000
s ce10.chrX              1087342 214 + 17718866 CCTACCTCTAAGCACTCTGGAAGTACTGAAGTCTGCCGGGATAAGCTTTCCTGCGTGAGGGACACTTGTTGCTTTGCGATGCCTAAAATCGACGTAGCTCTCTCGAAACGTTCAGCGGCTTTTTGAGATTCTTCCCGAAGTGATCGTTCCTG-----------------AAAA--TAGGGATTTTGTAAAATGTGAGAAATTAGATTTTCAGTT----------AAGGTGAAATTTGGAAATT-------------------------------------------
s cb4.chrX              21417811 170 - 21540570 CTTACTTCAAGGCACTCCGGAAGAACAGATGTTTGTCTTGAAAGACTCTCTTGAGTCAAAGAAACTTGTTGTTTCGCAATGGCAAGAATTGATGTTGCCCGTTCAAATCTTTCGGCTGCTTTTTGCGATTCTTCTCTGAGTTTTCTTTCctg-----------------aaaa---------------------------caagattttccgtt------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   768641 190 -  1162296 CTCACCTCTAGACACTCCGGAAGTACAGATGTCTGTCTTGACAGACTTTCTTGTGTGAGCGAGACTTGTTGTTTTGCAATTGCAAGGATTGAAGTAGCCCGTTCGAATCGCTCAGCTGCTTTTTGGGACTCTTCTCGGAGTGTTCGTTCCTGGAATTGAAAAGTtagcaaaaa---------------------------tgaaattcatgGGAATG---------------------------------------------------------------------
i caeRem4.Crem_Contig24 I 143 C 0
s caeSp111.Scaffold548     44293 254 -    67506 aatACCTCTAGGCACTCTGGAAGAACAGACGTCTGACGTGAAAGTGACTCTTGGGTCAaagaaacttgttttttggcGACAGCAAGAATTGAAGTGGCTCTTTCGAAACGTTCCGCTGCTTTCTGTGACTCTTCACGAAGGGTTCGTTCCTT-----------------TAAAATTTCTCAT--------------GAACTCAATATCATCATTCTGACCTCACGAGGTGACA-CTAGGGACCACGTCTGCGTGGCCGAGGAAAAGGATATCTTgccacaaaaact
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       261930 210 +   783054 attacctCGAGGCATTCTGGAAGGACTGAAGTTTGACGTGAAAGTGATTCCTGGGTCAACGATACTTGTTTTTTGGCAATTGCTAAAATGGAAGTAGCTCGTTCGAAGCGTTCTGCAGCTTTTTGTGACTCTTCGCGGAGAGTTCTTTCCTG-----------------GAAA--TACTAAT--------------GATTAGGACTTTATCATT------------GGTTAGA---AGTGGTTACGACTT----------------------------CAGCAAct
i caePb3.Scfld02_62     C 0 C 0

a score=-19331.000000
s ce10.chrX              1087556  99 + 17718866 -GACTTAAAA-TAAATGTAAATCGA--TATGAA------------------------------------------------CAGTTAAAATGTATCCTTTTCATAAT-TGAAATTTT---------------------------------GAAAT-------------TCAAATTATACAAAATTT-----TTTGTTTTCTCG
s cb4.chrX              21417981  46 - 21540570 ----ttaaaa------tcaaataaa--taaaaa---------------------------------------------------------------------------aggaatc-----------------------------------aaaaG------------------TTCGATAAAGTAT-----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     44547 203 -    67506 acagtaaaaaatttattaaagtaggtctacaaatattcaatcaattttttcaacattcttTTACTAATTTTGCTCGATTTTCGTGTAAAATGTGcaattttgttatttaaaaactttcaCAATCGGGcaaaatcagtgaaaaaaacgtaggaaaaaattaattaaatatttgctCTTATAAaatttctaccgtagttttcgtg
i caeSp111.Scaffold548  C 0 I 69
s caePb3.Scfld02_62       262140  52 +   783054 agctttaaaa-------aaaatcgg-ctACAAA---------------------------------------------------------------------------ACGAACCCTCCC------------------------------GAAAA--------------------TCATGAAGTT------------------
i caePb3.Scfld02_62     C 0 I 19
e caeRem4.Crem_Contig24   768831   0 -  1162296 C

a score=0.000000
s ce10.chrX              1087655 29 + 17718866 TTTTGTTCTAAAGCTAACGTTTTCTTATA
e caePb3.Scfld02_62       262192 19 +   783054 I
e cb4.chrX              21418027  0 - 21540570 C
e caeSp111.Scaffold548     44750 69 -    67506 I
e caeRem4.Crem_Contig24   768831  0 -  1162296 C

a score=67.000000
s ce10.chrX              1087684 1 + 17718866 C
s cb4.chrX              21418027 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     44819 1 -    67506 T
i caeSp111.Scaffold548  I 69 C 0
s caePb3.Scfld02_62       262211 1 +   783054 T
i caePb3.Scfld02_62     I 19 C 0
e caeRem4.Crem_Contig24   768831 0 -  1162296 C

a score=143322.000000
s ce10.chrX              1087685 559 + 17718866  
s cb4.chrX              21418028 555 - 21540570  
i cb4.chrX              C 0 I 123
s caeRem4.Crem_Contig24   768831 420 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     44820 439 -    67506  
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       262212 489 +   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-30930.000000
s ce10.chrX              1088244 476 + 17718866 TACCTAGAAAACTAATTTCAAATTAGCAACATTTTGATATAATCGAGTAAAATAATTTTGGGAACGttttttaatttttttttaaataCAAAATGAAATACTATCTAGGAAATTTTAAAAAATGAACCGCAAAGTTAATTTCTCAACAAAATTTGAAAAAAACCAGCAAAAACTAAGATATAATACAAGCCGCAGAGTAAAAAAATCCGTTGCTGGAAAAA------ATATTATGTGTGTAGTTGACG--AAAATCTGATTAAAATGGAACATTTCCCATCATTTTCTTCCAGAAAATGTATAAATGAGAAGCCTATTTCCAGGATCTACAAAAACCGCGAAAAATCTTAAGCACCTCCTCTGACAAGTTGCAA-AAGAGTATTTCGAGCGTTCGT--AAATGAGTCGAGCA-GGTAACGTGAAGTGA-GAAAAAACGGAT--CCTGATG-GC-----------ATGTGTGCTCATGGA------GCAAAAGTTGAAAATGAGcacaca
s caeRem4.Crem_Contig24   769251 264 -  1162296 ------aaaagtttg------------------------------------------------------------------------------------acagagtagggaaa----aagaacaa--------------------tggagattcaaaag----------agagaaaaaggtaT----------ATAAGAGAAAAACT--TTAGGCATAGAATGTCTGATAGA-------CTAGTGAAACC---ATCTCAT------------CTTCTCG--AATAACTATTTCCATAGCGCTCGGAGTCAAGT--------------------------------------------------GGGAGTTGCAGAAAAGATATTTAGAGCATGCACG-AAATGAGTCAGTTG-GCTAGAGTCAAG---------AAAAAAT--CCTGCTG--------------GCAAGTGTTCAtg--------ggaaaagttgagaatAAGCACACA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     45259 267 -    67506 aagacggaaaaattg------------------------------------------------------------------------------------actttgccgaaaat----aaa-------------------------aaacgctttgaa------------aaataaaaatgtgt----------cgatcatataaatg----acttgcaaaa------ataCT-------TAAGTGATG--GAGACGTGAT------------GTCCTCAACACTAGCTCTCAAAAG--------CAGTAAAG---------------------------------------------------GTGAG-------GAAGATATTTAGAGGAACCACctaaataaatcaaaaacggTTGAG--AAAcgatagagaaaaaggggacgGGATATGTGAAAAAATTCCGTGAGTCTTCATG--------GAAAAAGTTGAACATAAACACACA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       262701 330 +   783054 aatatgaaagcaTTATT-------------ACTTCGAT-----------------TTCAAGAGGCACGATTTACTGGCTACACTGATGC-AGGTCTAATACTCAGATGAATAT----AAAAATAC--------------TTggagaagatttttgaaag-------ctcaAGCAAAATTGTGG-----------GATTATAAAGATT---CAATCATAAAA------AT-------------GTGATACCGAGATATAAT------------CGTATCA--TCTAACTCTAACTAATATTATT-CAGTGAAGT--------------------------------------------------GTTAGC------GAAGATATTTAGAGCTAC-----GAATGAGTCAGAAA-AGTCAAGTCAAGCGctgccgaaaaaaat--tggcatgTGT-----------GTCAGTGTtcaaggaaaaagtgaaaaagttgagaataaGCACACA
i caePb3.Scfld02_62     C 0 I 9
e cb4.chrX              21418583 123 - 21540570 I

a score=-2866.000000
s ce10.chrX              1088720 24 + 17718866 cacacacacacacacacacacaca-
s caeRem4.Crem_Contig24   769515  3 -  1162296 ----------------------TGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     45526  5 -    67506 -------------------GAAGG-
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       263031  9 +   783054 I
e cb4.chrX              21418583 123 - 21540570 I

a score=-911.000000
s ce10.chrX              1088744 6 + 17718866 caAA-GG
s cb4.chrX              21418706 4 - 21540570 CAAG---
i cb4.chrX              I 123 C 0
s caeRem4.Crem_Contig24   769518 4 -  1162296 CAAG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     45531 5 -    67506 CAAAG--
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       263031 9 +   783054 I

a score=60871.000000
s ce10.chrX              1088750 216 + 17718866 TAGAAGAAC--GACAAAAGCCGGGTTAAGGAG-----------------------------AGAGAGGGCGAAGGAGAAGGAAGAAGAAGCAAATATATTGTGACTCGTGTTGGC-----GGGAGTTTTATGCACACACA-------------TATG-AATGCAAGCATGCACATTGAAATTTCAACTTGCAC------------CTCCGAGAAATGT------------CGAATCGG--------CGCGCG--------CACACACACAGTAGCAGG-----AACGTGTAGGCGGAGA----GGGGGGAGGGGG-
s cb4.chrX              21418710 281 - 21540570 TGTAAAAACCGGCTGGAAGCCAGGTTAAGAAAAT--GCTAAGAAAAGTAGGGCAAGAAactagaaataaaaaaagaagaagcgagGGGAGCAAATATATTGTGACTCGTGTCGGC-----GGGAGTTTCATGCACACACTCTCACACGCA---AATG-AATGCATACAT--ACATTTGAATTTTACCTCTGCCGCCCTCATTTTCTGCTGAGAGAAAT---GCGCGATCGCGCATTCA--------CCCGAC--------CGCACACACGGTAGCAAGGTTAAAGCATGAAAGAAACGAAAAGGTGG--CGGAGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   769522 276 -  1162296 TAAAAGAAC--GACAAAAGCCGGGTTaaggagagcagggaggaaaaggtgagtaggagaataagaa-agaggaagaagcagaagaagaagcaaataTATTGTGACTCGTGTTGGC-----GGGAGTTTcatgcacacacacacagacacacgCAATG-AATGCATACAT--ACATTCAAATTTCACCTGCGCC-------------GTTGGGAAAAAT---GT-CGATCGCGCATTCAC-------CCCGACCCACCCCGCACGCACACAGTAGCAAGGTTAAAGCATGAAAGAGAGGA----GTGGAATGAAGG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     45536 242 -    67506 TAG--GAAC--G--AGAAGCTAGGTTAGGggg----------------------------------------------tagaaaaagaagcaaataTATTGTGACTCGTGTTGGTGGTGGGAGAGCTTCATGcacgcacacacacacaca---aacgCAATGAATGCAT--ACATTCAAACTTCCCTTTAGGC-------TAGGTTGCTGAAGAAATTTCCGT-CGATCGcgcattcattcattcaccCGAC--------CGCACACACAGTAGCAAGGTTAAAGCAtcggaaaagaga-gatgagaAATGAGGGG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       263040 218 +   783054 TAGTAGAAC--G--AGAAGCCGGGttaaggag------------------------------------------------gaggaagaagcaaATATATTGTGACTAGTGTCGAC--TGGGAGAGTTTCATGCACACACTCAC----------AATG-ATTGCATACAT--ACATCCAAATTTCACCTCG---------------CGCCGAGAAAATT-------GGTCGcgcattcattcattcaccCGAC--------CGCACACACAGTAGCAAGGTTAAAgcatgagaagaaaga-gatgagatggaaaaga
i caePb3.Scfld02_62     I 9 C 0

a score=21.000000
s ce10.chrX              1088966 6 + 17718866 TTCAAA
s cb4.chrX              21418991 6 - 21540570 TCTAGA
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold548     45778 6 -    67506 GGCAAA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       263258 6 +   783054 aatgaa
i caePb3.Scfld02_62     C 0 C 0
e caeRem4.Crem_Contig24   769798 0 -  1162296 C

a score=-570.000000
s ce10.chrX              1088972 7 + 17718866 ATAA--AAT
s caeSp111.Scaffold548     45784 7 -    67506 CAGA--AAC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62       263264 9 +   783054 tcgaCGAAT
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX              21418997 5 - 21540570 I
e caeRem4.Crem_Contig24   769798 0 -  1162296 C

a score=691.000000
s ce10.chrX              1088979 23 + 17718866 TCAAAACTGTAAAACAAAACTAT
s caePb3.Scfld02_62       263273 23 +   783054 AGAAAACTGTCGATAAAAATCAT
i caePb3.Scfld02_62     C 0 I 1596
e cb4.chrX              21418997  5 - 21540570 I
e caeSp111.Scaffold548     45791  0 -    67506 C
e caeRem4.Crem_Contig24   769798  0 -  1162296 C

a score=0.000000
s ce10.chrX              1089002 1166 + 17718866  
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21418997    5 - 21540570 I
e caeSp111.Scaffold548     45791    0 -    67506 C
e caeRem4.Crem_Contig24   769798    0 -  1162296 C

a score=168.000000
s ce10.chrX              1090168 23 + 17718866 aggaatgaacagaaaacgagaga
s cb4.chrX              21419002 19 - 21540570 AGAAGTAGATAGAAT----GAAG
i cb4.chrX              I 5 C 0
e caePb3.Scfld02_62       263296 1596 +   783054 I
e caeSp111.Scaffold548     45791  0 -    67506 C
e caeRem4.Crem_Contig24   769798  0 -  1162296 C

a score=2389.000000
s ce10.chrX              1090191 15 + 17718866 aaaaggaggagaaaC
s cb4.chrX              21419021 15 - 21540570 AAAAGGAAAGGAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   769798 15 -  1162296 AAACGAAGAGGAATC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       263296 1596 +   783054 I
e caeSp111.Scaffold548     45791  0 -    67506 C

a score=12520.000000
s ce10.chrX              1090206 46 + 17718866 TGCCAATAGACAGCATGTAAATAAATTgc-----gccccccccccc-----ccccc
s cb4.chrX              21419036 46 - 21540570 TGTAAGTAGGCAGCATGTAAATAAATTGCGACTTGCTTTCTCTCCC----------
i cb4.chrX              C 0 I 704
s caeRem4.Crem_Contig24   769813 41 -  1162296 TGCCAATAGACAGCATGTAAATAAATTGC-----Gccccccccccc----------
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold548     45791 46 -    67506 TGCCAATAGACAGCATGTAAATAAATTGT-----GCACCCTTTTTCCTGTC-----
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62       263296 1596 +   783054 I

a score=-1754.000000
s ce10.chrX              1090252 26 + 17718866 ccTTTTCCCGCTTCATTGCCATTTCT------
s caeRem4.Crem_Contig24   769859  8 -  1162296 ------------------CAATTTCA------
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold548     45837 23 -    67506 ---TTTCTCTat------acatttcttttttt
i caeSp111.Scaffold548  C 0 N 0
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I

a score=499.000000
s ce10.chrX              1090278 707 + 17718866  
s caeRem4.Crem_Contig24   769867 751 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 106
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I

a score=0.000000
s ce10.chrX              1090985 87 + 17718866 ataaaattGGCTTGTATCAAGATGACAAACTAACATAGCTCTCATCTGAACAATTTCCTACTATACAAAAAAATCTTCAAAAAAATC
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I
e caeRem4.Crem_Contig24   770618 106 -  1162296 I

a score=2305.000000
s ce10.chrX              1091072 263 + 17718866 CGCATTCCTTCCATGAAAATGCTTCGGGCC----------AAAACGTCGGAAGTGC---ATTAAAACGTGTCCT-GTTACCATAGAGATG------GGATGTCAATTTCCGCAAAAACAGAATAAAATACCTTTGGTTGC------AGTTGTACGTTGTACAAAGTTTGCTCAAGCGACGGA----GAAAGTTATTAGTATACGGGGGAGGC-----------------AAGTGCGAATTTTTGTTTGCGTGGGCTTGCAATAGAA----TTTGGAATAGAAACGGAAAATGTTC---AGGAAATAAATAACAAAAA
s caeRem4.Crem_Contig24   770724 306 -  1162296 TGCATGCCTAGAGTGTAAATGCAT---GccgaaaacaaagaaaaaagagaaaaagcaaaatagAGACAAGCTCTAGTAGCTATAGAAACGTTTTACACacacatatttc-----aaaaatgttaaaat-tctATAATTGCTCAAAGGGAGGTTCCTTGT--AAAGTTTGCACAACGAAAGGGGTATGAAAGTTGTTGGCAAACGGAGGAggtaaaaaaacgaaagttcaaaaagagaGTCTTTATTTGCGTGGGATGGGAATAGAAATTTGTTggtagaaaaaatgaaaaaatgcacAAGCAGTTCGATAACAAGAA
i caeRem4.Crem_Contig24 I 106 I 30
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I

a score=0.000000
s ce10.chrX              1091335 34 + 17718866 TATTTTTAATGGAGATGCTTATATCAATAAGATT
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I
e caeRem4.Crem_Contig24   771030 30 -  1162296 I

a score=3502.000000
s ce10.chrX              1091369 283 + 17718866 TGGAGAGAAAAATAACA--ACAAATGACGTCTGTTGGTTTTATAAAAAATA-----TCATGCtttttaattttgaaaatgtattttttaattatttaagtcaaaaaatagaaaaaaaatttCAAGCTCT--TAAACTAGTACCAAAAATTTTTCCCCGAAAAATCAATAATTTTCTATTATAAAAAAGAAAACCCCAAAAAGTTAAAAAGCGAGACCCCGGGAGAGATTACATTCTCTTCTTTTCCCTATCACATTTGCACTTTTTTCAAACACTTTTCGTCACAAGACTTT
s caeRem4.Crem_Contig24   771060 240 -  1162296 tagaaataaaaacaacaatacAAATGACG--TATCGTTTCTCGAAAACAGAACCATTCATATGTTTTCATTActaaaatgtgtttttt-----ttttcgt------------------tttcaatctTTCGTAATTCACTATC----CTTTTt-----agatatcaaaaaaact-gattatacTAAAAG-----CCAAGAGGAAATAAGACTAAAAACC-GGAGAGATTACAACC----CTTCTCCCTATCAAAAATGCACTTT-------CAGTTTACATCACATGATTTT
i caeRem4.Crem_Contig24 I 30 I 553
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082 704 - 21540570 I

a score=0.000000
s ce10.chrX              1091652 1444 + 17718866  
e caePb3.Scfld02_62       263296 1596 +   783054 I
e cb4.chrX              21419082  704 - 21540570 I
e caeRem4.Crem_Contig24   771300  553 -  1162296 I

a score=1160.000000
s ce10.chrX              1093096 72 + 17718866 TCATAAAATGACGTATGAAAAGT--------------GTaaaaaacaaaaaaaaagtgaaaaccagaaaaacaaaaaaaaaTCA-GC
s cb4.chrX              21419786 86 - 21540570 TCAAAGAATAACGTTTGTAAATTTCATACtattttgagtgaaaaaacGAATCCGAACAAAGGTCA-AAGGGCaaaaaaaaGTCAAGC
i cb4.chrX              I 704 C 0
e caePb3.Scfld02_62       263296 1596 +   783054 I
e caeRem4.Crem_Contig24   771300 553 -  1162296 I

a score=-506.000000
s ce10.chrX              1093168 17 + 17718866 ---------------TGTATGTTTAAGGTTCG
s cb4.chrX              21419872 22 - 21540570 TATCATGCAATGGAATGTGTGT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   771853 12 -  1162296 ---------------TGTGTGTTTAAG-----
i caeRem4.Crem_Contig24 I 553 C 0
e caePb3.Scfld02_62       263296 1596 +   783054 I

a score=28868.000000
s ce10.chrX              1093185 263 + 17718866 GGAGTTCAGAGTACACAAACTC---------------------ACATGTGTGTATGTATATCTCTTTCTCTCAT------------TCTCTTTCTATTGG-----TAGAGGGCA-----------------------TAGAGAAAGAAGTGACAGCTCTACCCTACGTGCCGCGTGCC-TCGCG----AAACGAGTA--GATGGTGAGGGTGGTAGAGAAAGAGAGGGGTAAAGAAAA-GAGAATAATG----GGTGGTAGGAGATGGGG---GGAC--------AAGGAGA-GGCAAAAGAGA-----------AATGAACGGA-GCG---------------TAAAAACGAAGAAGATGAAGCAGAGAAAAGA
s cb4.chrX              21419894 344 - 21540570 ----TTCAGGGTACACAAACTTtgcgtgcgcgtgcgtgtgtgcgtgtgagtgtgtatgtgtct-cttctttctctcactcgctcaattcttctctcttGGGAGGCTAGGAAAAAGACGGGGTTGAGGTAGAGATCGGAAGGAAACAGAGTGACAGCTGTATACAATGCGCC---TGCGACCCCG----AATAGCGGAAGAATTCTAGAGACGGCTGACGAGAAAAATATCAGGCAGAA-GAGAATAATG---AGACGACTGGGAGGTACTACGAGAG--------TAGCAGATGGGAGAAGAGA-----GCGTgaaatgaacggg-gcgaaaactaagaattgtgaaaaacgaaaaagaagaa-ggagaagaaga
i cb4.chrX              C 0 N 0
s caeRem4.Crem_Contig24   771865 283 -  1162296 ---GTTCAGGGTACACAAACTC---------------------------GTGTGTatatttcc-tttctctctc------------tttttctctcttggGAGAGTAGAAGAGA------------------accgaaagaaaaagaagtgacaGCTCTACACTACGTGCCGCGTGCG-CTTAG----AATAGTGCACAAATCGAAGAGAGTGCAGAC-aaaaaaaTggcaaagaaaa-gagaataatgGGTAGATGGATGGAGATGAGGACGGGGC--------Gaaggga-gagaaaagagagagacgaGTGAAATGAACGGGCGCg---------------taaaaacgaagaaaacgaagggaaaagaaga
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       264892 310 +   783054 GAAGTTCAATGTACACAAACTC---------------------ACATGCATGTCTATatatct-tttctctctt------------ttttgggGGTTTCGAAGGTtgagagaca---------------------aaaagaaagaaaagcgaC-GCTCAACACAACGTGCCGCGTGCC-CTGTGAGgaaaaagcgttctgaatgaagagagtgcaacagaaaaagaaggcaaagaaaaggggaaaaatggGTATATGGCTGGAGATGAGGCCCGGAGAGATGACTGGGGGGCCAGGAGAAGAGAGTAGAGAAGGAAATGAACGGG-GGGAAAAGGGGCA-----TAAAACCGATGTAA--ggaggaaagagaaga
i caePb3.Scfld02_62     I 1596 C 0

a score=-83.000000
s ce10.chrX             1093448 18 + 17718866 CGCCTGCTGCTTTTCCTT--------------------
s caeRem4.Crem_Contig24  772148 35 -  1162296 ---cgaCTGCCTTCTTCTTGGCCCTcctgcttcttctt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      265202 18 +   783054 agacaactGCCTTCCTTT--------------------
i caePb3.Scfld02_62     C 0 I 2822

a score=1479.000000
s ce10.chrX             1093466  80 + 17718866 CGTCTC------------ACAAGCCATTTC-----CACATGAAACTG---------GATTTTTTTTCGACAAAAAACAGCAAGGGAAA--ACGACGGTGTTTTGCTTT
s caeRem4.Crem_Contig24  772183 102 -  1162296 cctctccttcAGCTGCTACCAAGCCATTTCGATTTCACAAGAGACGGGCAAaacgagatttttttttg------aaaagcgaAGAAAACGGTGGCGGTGTTTTCATTT
i caeRem4.Crem_Contig24 C 0 I 591
e caePb3.Scfld02_62      265220 2822 +   783054 I

a score=0.000000
s ce10.chrX             1093546 1452 + 17718866  
e caePb3.Scfld02_62      265220 2822 +   783054 I
e caeRem4.Crem_Contig24  772285  591 -  1162296 I

a score=3094.000000
s ce10.chrX             1094998 116 + 17718866 AAAAAACGGGATCACTGG------CAAATAGAGCAGCAGACAAAACAAGCACGGAGCTCTCACTTTATGAGTCATTCGGAAAA----------CTTACGGAAAGTTCACATAGTTGTTGGCCTGTGACTCAT
s caeRem4.Crem_Contig24  772876 122 -  1162296 aaaaaacgagatttgTGATGACGACAAACAGAGCAGCAGACAAAACAAGCATCAA---CTCCTCTTGGGA------CGGAAAAGTGAATCActctctcaaaaagtttacaaaactAGTGTAC-GTGACTCAT
i caeRem4.Crem_Contig24 I 591 N 0
e caePb3.Scfld02_62      265220 2822 +   783054 I

a score=0.000000
s ce10.chrX         1095114 443 + 17718866 GGTGGGAAGCAGTATAATTCTAAATGACGCGAAAAGTGTGATGTTATAAAATTTGGTAAGCTTCAGAGCATAATAATTGATAATCTGTGCAACTTCTACAAGTTTTACAGATTTTGACGATTCAGATCAAATTAAATTAATATTTTTGGTGGCCCAAATTTGATTCAAATTTTTCAGTAGTGACTGGGCTGGTGCAAACATTTTTTACAAATCTATTGTGTCTTGGAAATGTGCCCAAAAAATTGGTTGACAACACGCTTGCACATATAAAAACTGTGCTCTGCAACCCCTATAAAAATTTTTTAAATTTGTGATTTGGTCACTGCAAACACAAAATTGGTGATTGCGCTCATCAAGCTGGTCAGTGGCAACACAAAATTGGTCAGTGCACACATAACCGAAATTACAGTTGCAAATAATATTTCTTATTGAATAATCCaaaa
e caePb3.Scfld02_62  265220 2822 +   783054 I

a score=91.000000
s ce10.chrX             1095557 1 + 17718866 t
s caeRem4.Crem_Contig24  249688 1 +  1162296 t
i caeRem4.Crem_Contig24 N 0 C 0
e caePb3.Scfld02_62      265220 2822 +   783054 I

a score=1230.000000
s ce10.chrX             1095558 192 + 17718866 tttattttattaaataataCATAGAAGTGAGCAAA--GTAGTAACCAGCAAAAAACACGATTCATATCCGAAATCTGCAAAAAGTTGTTCGTCTCGGAACGTTTCCAATTCCACAGGAGCT----CTGCTTGG---GCTCTTAACTGACAACCAGTTGGGAGATTCTGATTTTAGCCTGAGATCTGAAAA------------AAAACACTTAC-------
s caeRem4.Crem_Contig24  249689 198 +  1162296 tttaattCATTAAATAAAACATGCTAAACGATAAA--GACGCGGCTAAGATAAATAATGACTGCAGTGGGAGTTCGGGAAACAGTGGCTCCCCTCGGAAAATGTCGA----CGAATGTTCGGATTTTTTCCCA---AGGTTTCACTTGCAGCCATTTTCCGGATGTGGGCTTCACTCGAGCGTCTGTAA-------------TGAACATCTAATTTTTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    59225 211 -   141934 ttcattttatcaaGTAAATCAAAGTGGACGTTAAACTACCGCAGAGCAGTAAAATAGCAA--GCCTTGGGTAGTCTTCAAACAacatttcttctcgaaacaTTTCAATTGTCAAATGTTTG----CTGTCCGGTATACCTTTAACATCCAACCAGCGATGGAAATCAGGTTTCAGGCGTGcatctagaaaaatgttcattaTAAAACACTGAATTAC---
i caeSp111.Scaffold514  N 0 C 0
e caePb3.Scfld02_62      265220 2822 +   783054 I

a score=-5171.000000
s ce10.chrX             1095750 169 + 17718866 --------AAGTCTGAAAA----------------------ATT----TTTAGAAAACCCACC---ACGAGAAGTTTTAAGTGTTGTGCAACCTTTGAACAAATCCCCTTTGCAGTCTACAGCAATTGTTGGAACAGGGAATTTT--AGAGACTTTGGGAAAGCTGAAAA------TTTGTCCGTGGGAATTTTCAGTCAAA--ATTGAAAAATA-A
s cb4.chrX                 3991 180 + 21540570 --------aaatctcgaaa--------------attttctgatt-cattAGAAAAAACATACC---ATTGTGCATTTTCAAAGCTATACAATTCGCGA---ATTCCCCGTTACAGTCTACTGCTACATTTGGTGTCTTAAATGTA--AGCGTGCGTGGGTACACTGAAAAACTACtttatttc--caaatttttcagtaaaa--agagaaaactc--
i cb4.chrX              N 0 C 0
s caeRem4.Crem_Contig24  249887 165 +  1162296 --------ATCtctcaaaa-----------------------------tatgaaaaactcaCCTTTACTTTGAATCCCAGTTGTTGGACAACCTGTGA---AATTTCCTTTGCAATCTACAGCGATTATAGGttggaaaaatttt--acttccggaAGTCTCTCTGCAATACTTTctttgttc--gaaa------aataacATTGTAGATTACTC--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    59436 197 -   141934 AAGTTAGAGCATCTGGAGATCAGAAAGGGTaagtttttctcattgaaagtTGAAATAATTACC---TTTGGAGACTCGCAACTCAGTGCAATCAGTGAAGGAATTTTCTTTACAATCAACTGCTATAGTTGGCGGGTTGAACTGAAGAGTTCTTGGAAGAGCTGtggaaaacggttttttac-------------agttaaa---cagaaaaatta-
i caeSp111.Scaffold514  C 0 I 3
e caePb3.Scfld02_62      265220 2822 +   783054 I

a score=-46743.000000
s ce10.chrX             1095919 681 + 17718866  
s cb4.chrX                 4171 780 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  250052 495 +  1162296  
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold514    59636 470 -   141934  
i caeSp111.Scaffold514  I 3 C 0
s caePb3.Scfld02_62      358056 634 -   783054  
i caePb3.Scfld02_62     n 2822 C 0

a score=-6044.000000
s ce10.chrX             1096600 40 + 17718866 GAG----------CATTAATGTATAAAATGTTTG----ACACTTCTGATT------GTTA
s cb4.chrX                 4952 37 + 21540570 -------------GGGCAATTCTGAAAG----------ATACCCTTTCTTTGCAGTGCCA
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold514    60106 30 -   141934 -----------CTTTACAATCTACA-------------ACAGCTAGGATT------GTTA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      358690 60 -   783054 GATTTTTCTAACGTGTCAATTAACAATTTGATACGCACACAGCTTAGTTTTTTCCCGTTA
i caePb3.Scfld02_62     C 0 I 27
e caeRem4.Crem_Contig24  250547 25 +  1162296 I

a score=-1304.000000
s ce10.chrX             1096640 14 + 17718866 AAAAAAGGTAAACG
s cb4.chrX                 4989 13 + 21540570 ATCAGAACCAAGT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    60136  6 -   141934 -TAAAAG-------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      358750 27 -   783054 I
e caeRem4.Crem_Contig24  250547 25 +  1162296 I

a score=-5695.000000
s ce10.chrX             1096654 47 + 17718866 AAAAATAAAACCAGTGGAAAAATATTTTTAAAAGT-ATTTAACGTATA
s cb4.chrX                 5002 35 + 21540570 -----TAAATTTAGTG-----ATTTTCTTTAAACA-AACtgacatt--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    60142 19 -   141934 ----------------------------TGAGATA-GTTTAACGTCgc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      358777 33 -   783054 -----GAAAAT----------ATCTATTTGaggcatttttttcatcat
i caePb3.Scfld02_62     I 27 C 0
e caeRem4.Crem_Contig24  250547 25 +  1162296 I

a score=-9851.000000
s ce10.chrX             1096701 45 + 17718866 ------TT-----------AAAACACTTCACAACAACTTTGAAAAATATTTCTGATATATTT----
s cb4.chrX                 5037 22 + 21540570 ttcaattt-----------gataaaCACCAA-----------------------------TT----
i cb4.chrX              C 0 I 282
s caeRem4.Crem_Contig24  250572 16 +  1162296 ------tt-----------aaaacacaatat-----------------------------tt----
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold514    60161 33 -   141934 tctcattttccaataatc-AAGGGACCTCTC-----------------------------TTC---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      358810 33 -   783054 tatcaTTT----GAAGTCGAATTGACTTCTG-----------------------------TTCCGC
i caePb3.Scfld02_62     C 0 C 0

a score=-15177.000000
s ce10.chrX             1096746 292 + 17718866 AATCATGTTTTTGAACA--------------------TTTTTCCTGGTTTTGGTTAATTTTAAGTTTTAT---------TTAAGAC------TTTTCTGTAACAA-TTCCT-----ATTCTAATTTACCTTCATATCTCCAT-GGTTATCTTTTGCTAGCAAAATGCAACTTTGAACATTTA-CAATTAGTATTGCAAATAGCAGT-GTGAATAAACCATC--------------------TTTGGCCACCATT----TTCCCGATAATCAAGGTC----CCTCCTCCGTTTGCCTTTAG-----GA--GGAGGTGTCGTAAAGTGTGGTGCATTGTGTGCATGGCCACCGTGAAC----CGGTGTGCAGACCCG
s caeRem4.Crem_Contig24  250588 262 +  1162296 -------------------------------------------------------tttgcaatatttttt----------------------cattttttcacaattttct--------cgtAATCACCTGTAAATTTCCGT-GTCCTTCCTTTGAGATCAAATTG-----------------CAGTCCTCACTTCTTGCATAATC--AGTAGCAAACACcaataataaaagaaaaattagcatattccttctt----tttccaataatcGTGGTC----CCTTTTCCCTTTCTTGCTCACCCTGCTAACTATTTCTCGTCATTTGTGGTGCCCTGTCCGCAGACACACTAGAATTGCCGCGCACTGCGGACCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    60194 284 -   141934 --Tcgtgtttct-------------------------tctttcccagGCCCAATTGTCGTGGTGTCTTGT-GCAATGTGTGCAGACACACGACGCGCAATCGCACCCTCCTTTCTTAGCCGAATTACCCGGCAATTCTCAATCATTTATGTTTTACAATC----------CACGA--------CAGCTAGAATTGTTATAAAAGTCAGAGAGTTAAACGTCg-------------------------cttttat----tttccaataatcAAGGCACCTTTCTTTTCGTGTGTCTTCTTTCTCTGGC--CCAATTGTCGTGGTGTCTTGTGTATTGTGTGCAGACA--------------CGCGACGCGCACTCG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      358843 317 -   783054 GACTTTGTTTCTATCAAAGTATTTTATTTTAATGTAGTCTATTCAACTTCTGATATTCATCGTATTTTTTAACTATTTGTT-----------TTCTCTATTGCAAATTTCTCACTCAATCATATTCACCTGTACATCTCCAT-GTTTATCCTTTGGTATTAGGCTGCAA-CAAGAACATAGTCCAATCAGTAATGTTAATATGATC---GAGGTAATCCTCAGCA----------------TGTCCTCTTTTCCTTTGTTTCCACTAATC----------CCACGACGGCTGTCCTCTGTCTCT-CT--TCAGCTGTGGTGGTCTCTAGTGCAGTGTGTGCGTACAC-------------CGAGACGCGCAACTG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX                 5059 282 + 21540570 I

a score=60556.000000
s ce10.chrX             1097038 380 + 17718866 --CGCAC----TCATCCTCTCTT--------TTTCTTTGTCTT--TTCTTTTGTGTTACA--CCGATTTTTTTTGAAA---ACTGAATTTTAAATAAATTTTCTTGCTTAATTTTT--CTTTTTTTTTTTCAGGTAAATGGCCGATATCATCGAGCGGATTCGGTCTCAGGACGAGTATCGGGAGTTTTATGAGTTGGCCACCAAAATTCGCAATCAAAAATTGCTTACGGACGCTGAGGTAGGAATTTTGAAGTTTTTAAAAGTGATTTCAAATACAAATTTCAATTTTTCAGCTCCACTCTCTGAACAGACACCAACAAGAAGTATCGGATAACGAAATTAAGTTGCTCACCGAGGCATGGAGAAGCTCCTACTGGAATGTAAGTGT-----------TCTTGATGATTAGG-
s cb4.chrX                 5341 384 + 21540570 TGCACTCATTATCGGTGTCTTTC--------CGTTCCTTTGCTAttgattttgttttatttgtcTCATTGTTGTCAACATTGAtggatttctcatttttcgatattgtGAAGATGA--------TTTTTGCAGGTAGATGTCGGAAGCTGTAGAAAAAATCCGATCACACGATAAATACCGTCAATTCTATGAGCTTGCCACTAAAATCCGCAATCAAAAATTGCTCGCCGATGCCGAGGTTGTAATATAG-TTTTGTCCGATATACATTTCACTG-------TTACATTTCAGTCTGCTTCACTCCATCGCCACAAACAAGAAGTTGCGGACCTCGAAGTCAAATTGCTAACTGAAGCGTGGAGGAGCTCTTATTGGACGGTCAGTTTGATT-------ATCGAAAGTTATAAA
i cb4.chrX              I 282 C 0
s caeRem4.Crem_Contig24  250850 387 +  1162296 AGTACTC----TCCTCGTTTTACA-------CACCCTCTCGCc----actttgttttgtt--tctaattgttgtttat-cggatatttctctgatttttcgtcttttttcacgtaattcatttcttttttcagtcaaatgaGCGAAGCCATTGAGCGGATTCGTTCGCAGGATGAATACCGCCAATTCTACGAGTTGGCAACCAAGATTCGCAACCAGAAACTGCTTGCCGATGCGGAGGTGAGA----------TTTTCGACGCAAATATTAGTGCGaacatcgatttttcagctcaattcgCTCAACAGACACAAGCAAGAGGTGGCGGATATTGAAATAAAGCTGCTGACCGAGGCGTGGAGGAGTTCTTATTGGAATGTGAGTTGATTTCAATTAAAACGgaagaaataaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    60478 363 -   141934 --CACCC-------TCCTTTCTTAGCCAAATTACCCGGCAATT--CTCAATCATTTGTGT--TTTGCTCTTTGTCTGC-ACGTTCAATGTGTTAGCAATCTTaatgaataat-------------attttcagcaaaatggctcatcaaatagaaaatattcgGTCTCAAGACAAGTATCGccctttttttgagcttGCAACCAGAATACGCAACCAGAAATTGCTTGCTGATGCCGAGgtaaa-----------attaagaaaaaaaataaagttgtATTTCC--TGTTGTAGCACAATTCATTGATTCGGCACTACCAAGAAGTTCAAGACAGCGAAATCAGATTGTTAACGGAGGCATGGAGGACCTCCTACTGGAACGTGAGTAC-----------ATCGGGtgttattg-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      359160 369 -   783054 --CGTAC----GCGCCCCTTCTCA-------TATCCCTCAGGT--TAATATCCTTTTACC--TCATTTCCTTGTTATC-TCGTTAAATTTTCTCATATTGCTTATTTTTAACATCG--------AATTTGCAGACGAATGGTGGATAAACTTGAACTTATTCGTTCTCAAGACGACTATCGGCCATTTTATGAGCTCGCCGCCAAAatcagaaaccaaaaattgctAACCGATGCGGAGGTTagtgt--------tttcagagaaaaaatgatatgTTATTATCGATTTTACAGTTGAACTCGCTGAACCGTCACAAGCAAGAAGTCCAGGACAGTGAAATCAGATTGCTTACTGAAGCGTGGAGAAGTTCATATTGGAATGTAAGTTT-----------taagaataattttg-
i caePb3.Scfld02_62     C 0 I 398

a score=-3788.000000
s ce10.chrX             1097418 10 + 17718866 ATTCCCACTA--
s cb4.chrX                 5725  6 + 21540570 ----CCATCa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  251237 10 +  1162296 tgtttcatcG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    60841 10 -   141934 --atttttaata
i caeSp111.Scaffold514  C 0 I 75
s caePb3.Scfld02_62      359927 10 -   783054 --ATCCACAAAA
i caePb3.Scfld02_62     I 398 C 0

a score=-3608.000000
s ce10.chrX             1097428  7 + 17718866 ------AATATTG
s cb4.chrX                 5731 11 + 21540570 aggttttttgt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  251247  2 +  1162296 A---------T--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      359937  7 -   783054 ----ACCATAT--
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold514    60851 75 -   141934 I

a score=44203.000000
s ce10.chrX             1097435 103 + 17718866 TTCAGAACGTTGGACGTCAGCTCAAAAACCAGGCACTCGAGCCAACAATTGCATGCAGGCTTCTCAAAGAGATTAGTGAAACTGAAGCTCTCCCAGCATACAA
s cb4.chrX                 5742 103 + 21540570 ttcagaacgTTTCTCGCCAGCTCAAGAGTCAGTCTTTAGACCCTAGTTATGCTTGCCGCTTGCTCAAAGAAATTAGTGACACCGAGGCTCTGGCTGCCTATAa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  251249 103 +  1162296 TTTAGAATGTCGGTCGCCAGTTGAAAAACCAATCCCTGGAACCAAACATTGCTTGTCGACTTCTGAAGGAGATCAACGACACAGAAGCACAGCCAGCCTACAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    60926 103 -   141934 tttagaatgttTGTCGATTGCTCAAAAACCAAACTCTCGAACCAACTGTAGCCTGTCGACTTCTCAAGGAAATCAACGAGACAGAGGCTATGCCAGCCTACAA
i caeSp111.Scaffold514  I 75 I 1
s caePb3.Scfld02_62      359944 103 -   783054 TACAGTATATCTGCCggcaactcaaaaatcaaagtctGGAGCCAACGATTGCGTGTCGTCTTCTCAAGGAGGTTGCCGAGACAGAAGCACTACCTGCTTACAA
i caePb3.Scfld02_62     C 0 C 0

a score=-1657.000000
s ce10.chrX             1097538 6 + 17718866 GTGAGT----
s cb4.chrX                 5845 4 + 21540570 ----gtaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  251352 6 +  1162296 ----GTGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      360047 6 -   783054 GTATGT----
i caePb3.Scfld02_62     C 0 I 41
e caeSp111.Scaffold514    61029 1 -   141934 I

a score=-722.000000
s ce10.chrX             1097544 46 + 17718866 AAAGAAAAGCTGAGCTGCAACCGACATTTTCCG---AGTTTTGCCAATA
s cb4.chrX                 5849 21 + 21540570 ------------------------gattttttgattggtt----caata
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig24  251358 25 +  1162296 ------------------------GGTTTTTCGCTAACTTTTggcaaaa
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      360053 41 -   783054 I
e caeSp111.Scaffold514    61029  1 -   141934 I

a score=-2107.000000
s ce10.chrX             1097590 298 + 17718866 AATTGAATTTATATGAAGTGTAGTGAATGACAGAAATTATCGGTCGAGTTGCACCATGTCATAAAATATTGGATATGTCGATTTACGAACCT--AAATTTTTTAATTAATACAATTTTCGATAACTGAAACTTAAATGAGCAAAATAATTTTCATGCCTAAAACCATGAAAACCAGAATGATCACTTTAACATATTGCCCGTAAACTCACATAAAATATGACTGGAA--------------------AATTTAAAAAGACCACTATTCCGAAAATGCCATACGAGCCAACATAA-----------------CAATACAGGAAAAATGCAAATTAAAA
s caeRem4.Crem_Contig24  251383 235 +  1162296 aa--------gaaggaaaagt------tgataaaaat--------------------gtaagaaaata-----------gAATAACGGACgttggaagtttttgaagaacgCGAATGGCG-------------------------TGGTTTTGAAACGTAAAAACATG----------CCATCAACGTAACAGATG------------AAGtaaaacatgataaaaatgagttttttaaaagtttttaatttaaaaat-------ctcTGAGCTTGCTCTA-AAGCGAagaaaataggttttgaaagcGCCCGGTTCAG--AAAATGTAAATTCCAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      360053  41 -   783054 I
e cb4.chrX                 5870  16 + 21540570 I
e caeSp111.Scaffold514    61029   1 -   141934 I

a score=-1102.000000
s ce10.chrX             1097888 2 + 17718866 ------AA-
s caeRem4.Crem_Contig24  251618 9 +  1162296 CCATCTATA
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_62      360094 2 -   783054 ------AT-
i caePb3.Scfld02_62     I 41 C 0
e cb4.chrX                 5870 16 + 21540570 I
e caeSp111.Scaffold514    61029 1 -   141934 I

a score=2263.000000
s ce10.chrX             1097890 6 + 17718866 TTCAGG
s cb4.chrX                 5886 6 + 21540570 tTTAGG
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig24  251629 6 +  1162296 TACAGG
i caeRem4.Crem_Contig24 I 2 C 0
s caePb3.Scfld02_62      360096 6 -   783054 TTTAGG
i caePb3.Scfld02_62     C 0 C 0
e caeSp111.Scaffold514    61029 1 -   141934 I

a score=36917.000000
s ce10.chrX             1097896 82 + 17718866 CACGTCGGGCATCACTTTTCCACTCTTGACCAATTGCTGACAATATTGTACAATGAGCCCCAGTCGGTCGCCGAACTATTGA
s cb4.chrX                 5892 82 + 21540570 CACTTCGGACATCATTATTCAACATTGAACCAATTGCTCACAGTTCTCTACATGGAACCAACATCAGTGGCTGAGTTGTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  251635 82 +  1162296 CATGTCGGACACCACTTTTCCACCCTTGACCAACTCCTAACAGTGCTTTACAAGGAGCCGAGCACAGTTGCCGAACTGCTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61030 82 -   141934 CATCTTGGGCATCACTTTTCAACACTGGATCAGCTCCTAACTGTTCTTTACAAAGAACCATCATCGGTAGCTGAGATTTTGA
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      360102 82 -   783054 CATGTCGGACACCACTTCTCTACATTGGACCAGCTTCTTACTGTTCTTTATGAAGAACCGGCATCGGTAGCTGAGCTTCTTA
i caePb3.Scfld02_62     C 0 I 40

a score=3359.000000
s ce10.chrX             1097978 30 + 17718866 ATAGCATTGACAGAAATGATGTGAGTTT----TT
s cb4.chrX                 5974 30 + 21540570 ACATGTGGGACCAGAATGATGTGAATAC----TT
i cb4.chrX              C 0 I 151
s caeRem4.Crem_Contig24  251717 22 +  1162296 ACAACTTTGATCAAAATGATGT------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61112 34 -   141934 ATGCTATTGATCAAAACGATGTAAGTTTCCCCTc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      268042 30 +   783054 ATTGCAATGACGGAAATGTGGTAAGTTT----TT
i caePb3.Scfld02_62     I 2822 C 0

a score=851.000000
s ce10.chrX             1098008 5 + 17718866 CCATT
s caeSp111.Scaffold514    61146 5 -   141934 caatt
i caeSp111.Scaffold514  C 0 I 7
s caePb3.Scfld02_62      268072 5 +   783054 CTATT
i caePb3.Scfld02_62     C 0 n 0
e cb4.chrX                 6004 151 + 21540570 I
e caeRem4.Crem_Contig24  251739 0 +  1162296 C

a score=1002.000000
s ce10.chrX             1098013 13 + 17718866 GTTTCAACACATT
s caeSp111.Scaffold514    61158 13 -   141934 ttttaatatcacT
i caeSp111.Scaffold514  I 7 C 0
s caePb3.Scfld02_62      360224 13 -   783054 TTCtaaaatcatt
i caePb3.Scfld02_62     I 40 C 0
e cb4.chrX                 6004 151 + 21540570 I
e caeRem4.Crem_Contig24  251739  0 +  1162296 C

a score=83250.000000
s ce10.chrX             1098026 233 + 17718866 ACCTATAATTTCCAGATTACATCAAACGACTCCACAATTCAAGTACTCTTCCACCTCGTCTACTCGTGCGCTCTGTACCCAGAGGATGAGCTCAAGATTGCACAAG-----------------------------------------------------------TTGTGTGTAATCTTTTGAAGCTTCAACTATACAGATCTGGCAGTGAGATGAGGACAATTCTGCGGAAGGAAACTTCCATATCAACGAGATTCTACAAGCATTTTGTAGAACTAATACATCCGACAAT
s cb4.chrX                 6155 287 + 21540570 ATCTAATTTTTACAGGTCACTACTAATGACAATTTGATCCAAACGTTCTTTCACCTGGTTTACTCTTGCGGGCTCTATCCTGACGATGaactcaaaattgctcagg--TACCATATTTGC---AATGTAAACGCATCTAATCTCCATCGTGTATCTATTTGCAGGTTGTTTGCTACCTTCTGAAACTCCAGTTGGTCAAGTCAGGGTCTCAGATGAGAACTATGCTGAGAAAGGAAACATCAATTTCGACTAGATTTTACAAATACTTTGTGGAGCAAATGCATCCGACAAT
i cb4.chrX              I 151 C 0
s caeRem4.Crem_Contig24  251739 273 +  1162296 ------TTCTT-----------CTAACGACGCCATCATTCAAGTCTTCTTCCATCTCGTCTATTCATGCGGTCTCTACCCCGAAGACGAATTGAAGATTGCTCAGGTTtgcgtttttttctcgattggAGTCTCACTCAATGCTAA--AATTATCTGATTCCAGGTTGTATGCTACCTGCTCAAACTGCAGCTGCTCAAATCGGGGACTCACATGAGGACGATGCTCAGGAAAGAGACGTCAATGTCCACACGATTTTATAAACATTTCGTGGAGTTGATGCACCCGACAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61171 226 -   141934 CTTTAA-------AGGTGGCCACCAGCGATTCTATCATCGAAGTGCTGTTTCACTTAGTTTATTCGTGCGGCTTGTACCCAGAAGACGAGCTGAAAATAGCGCAAG-----------------------------------------------------------TGGTCTGCTACTTGCTCAAACTTCAGTTGTTCAAAGCTGGTTCACAAATGCGCACAATGTTGAGGAAAGAAACATCAATATCCACAAGGTTTTATAAGCATTTCGTCGAGTTGATGCATCCAACAAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      360237 233 -   783054 attttgtgttttcagattGCTTCTAGTGATGCAGTGATCCAAATGTTCTTCCACTTCATCTACTCTAGCGGATTGTACCCCGAGGATGAATTGAAATTGGCACAAG-----------------------------------------------------------TTGTCTGTTatcttctgaaacttcaacTACTCAAATCGGGAGAAGCAATGAGAACAATGCTTAGGAAAGAGACATCAATGTCGACACGTTTCTACAAACATTACGTCGAATTGATGCATCCAACAAT
i caePb3.Scfld02_62     C 0 C 0

a score=65032.000000
s ce10.chrX             1098259 88 + 17718866 GGTATATCTAACAAAAGCTTTGAGGAAAGGGGTTTTGGATGTTATTCAGTTGGGCAGCTTTTGGTTGGATATCGATGCAAAACAGGTA------
s cb4.chrX                 6442 85 + 21540570 GGTGTATCTTACAAAAGCGCTGCGGAAGAGTGTTCTCAATGTTATTCAACTTGGAAACTTTTGGCTTGACGTGGATATGAAACAG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  252012 88 +  1162296 GGTTTATTTAACCAAGGCCTTGCGGAAAGGTGTACTCGACGTGATTCAACTCGGAAGTTTTTGGTTGGACATTGATGTGAAACAGGTG------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61397 88 -   141934 GGTTTATCTAACCAAAGCTTTGCGTAGACGGATTTTAGATGTAATTCAGCTTGGGAATTTTTGGCTGGACATTGACGTAAAGCaggta------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      360470 88 -   783054 GGTCTACCTTACAAAGGCTTTACGCAAAAGTGTTCTGGATGTGATTCAGTTGGGGAACTTTTGGCTCGACATTGACGTGAAACAGGTA------
i caePb3.Scfld02_62     C 0 I 816
s caeJap4.Scaffold17966     441 94 -   140921 ggTTTATTTAACAAAAGCACTGCGGCAAGGAGTACTAGCCGTTATACAGCTTGGCAATTTCTGGCTGGACATTGATGCAAAGcaggttttttta
i caeJap4.Scaffold17966 N 0 C 0

a score=-2531.000000
s ce10.chrX             1098347 24 + 17718866 AATTTTATGATTCTGCACTGACCA
s caeRem4.Crem_Contig24  252100 24 +  1162296 ATTGAGtttattagagaaaaaaga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61485  4 -   141934 --------------------aaaa
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966     535 24 -   140921 aattttagtaattttcATTAACTA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e cb4.chrX                 6527  0 + 21540570 C

a score=-4007.000000
s ce10.chrX             1098371 20 + 17718866 AAAC-------------------------TAGGATGTGGAAAAGC-----------------------
s caeRem4.Crem_Contig24  252124 68 +  1162296 aaattcgacGGGTGGAACCGTTCTCAGCATAAGTTGTAAAAGAGATATGATAtaccattttgaaaaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    61489  4 -   141934 aaac----------------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e caeJap4.Scaffold17966     559  0 -   140921 C
e cb4.chrX                 6527  0 + 21540570 C

a score=-9738.000000
s ce10.chrX             1098391  69 + 17718866 TTATACAGTAACCACAGAAT--------------------------TCGGTTCAAAAATTGCACTGA-----------------------------------CCAAAATAGTGTTACTA--GCTGTTAAAAC--------------------------------------------------
s cb4.chrX                 6527  36 + 21540570 ----------------------------------------------TCAAGT--------------------------------------------------TCCAGATTCCTATCCGACGGCCGCCAAAAC--------------------------------------------------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24  252192 181 +  1162296 ctgtaCA-TCACTACACTACTCATATTGTGTTGTGATCAGGCGTGTTCGAGTAAAAATTTTCTACGAAAAACCAGTCGGAAAATCGGATATCCTAAatgttctccaattttttttttgaagaatgcgAAAACAATCCcgaaaatgtttctaaaatgGGTTATTTGTTgcgttttctcaaaat
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e caeJap4.Scaffold17966     559   0 -   140921 C
e caeSp111.Scaffold514    61493   0 -   141934 C

a score=-822.000000
s ce10.chrX             1098460 126 + 17718866 AATTGTTAGTGTAGTATATGT----CATCCACAAAATACTT---------AAAGTTTCAT-----------TTCAAGCTCTGTAGGCTTGAAAAGGCTTGACAATTTGTTT-------------------AAACAAT---------------TTCAATTTT------AAAAACCTGGTTTTGGTTTAGCT
s caeRem4.Crem_Contig24  252373 190 +  1162296 taaaatttttttaatacatgtttttcatcaataaaaGCTTTTACCAGTGAAAAACGCAATAGAAGCAGATCTTGAAGTTTCGTCAATTCTACTAAATTCTAcgatttttttcggagaattaTCCAACGTTAGAGAATCGGAGAAGtcggatatccgattttcCGACTACAAGCCTGGTTGTGATACAGAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e caeJap4.Scaffold17966     559   0 -   140921 C
e cb4.chrX                 6563   5 + 21540570 I
e caeSp111.Scaffold514    61493   0 -   141934 C

a score=77.000000
s ce10.chrX             1098586 18 + 17718866 GCTGGAAAAAAACTCACT
s caeRem4.Crem_Contig24  252563 17 +  1162296 -TTGCTTAAAAACTCGAG
i caeRem4.Crem_Contig24 C 0 I 24
s caeSp111.Scaffold514    61493 10 -   141934 --------aaaaccgAAG
i caeSp111.Scaffold514  C 0 I 15
s caeJap4.Scaffold17966     559 18 -   140921 ggtaaaaaaaagataaat
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e cb4.chrX                 6563  5 + 21540570 I

a score=-2105.000000
s ce10.chrX             1098604 28 + 17718866 TTCAAGAGAGCTTTTCATACGTCTATAT
s caeRem4.Crem_Contig24  252604 28 +  1162296 tcgaaaaaaggaaatttttttgatacaa
i caeRem4.Crem_Contig24 I 24 I 55
s caeJap4.Scaffold17966     577  5 -   140921 ttcaa-----------------------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      360558 816 -   783054 I
e cb4.chrX                 6563  5 + 21540570 I
e caeSp111.Scaffold514    61503 15 -   141934 I

a score=275762.000000
s ce10.chrX             1098632 504 + 17718866  
s cb4.chrX                 6568 450 + 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24  252687 499 +  1162296  
i caeRem4.Crem_Contig24 I 55 C 0
s caeSp111.Scaffold514    61518 500 -   141934  
i caeSp111.Scaffold514  I 15 C 0
s caePb3.Scfld02_62      361374 497 -   783054  
i caePb3.Scfld02_62     I 816 I 20
s caeJap4.Scaffold17966     582 561 -   140921  
i caeJap4.Scaffold17966 C 0 C 0

a score=-4512.000000
s ce10.chrX             1099136 23 + 17718866 GATACTGCTCTCAACTAGAAGCT---
s cb4.chrX                 7018  6 + 21540570 -----------------GAGccc---
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig24  253186  6 +  1162296 -----------------GAGGCC---
i caeRem4.Crem_Contig24 C 0 I 21
s caeSp111.Scaffold514    62018 12 -   141934 ---ATTGAT--------GAATCC---
i caeSp111.Scaffold514  C 0 I 7
s caeJap4.Scaffold17966    1143 18 -   140921 CATACAATC--------AAATACAAT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      361871 20 -   783054 I

a score=103140.000000
s ce10.chrX             1099159 165 + 17718866 TTTCAGAACACACATCTCATATCAGAAATGATGGATGCTTTACTTGTGGAGAAACTTGCTCCCGACGTTGAGATCACGTCGCTTATCGCGAACGGGACTGCTGAATCGGATATGGCTACGAAATCGAGTTTTGTTGGAACTGTGGCGGATGTTAACGTTTTGGTG
s cb4.chrX                 7042 165 + 21540570 tttcagaatactcaTCTTATTTCCGAAATGATGGATTCGTTGTTAGTGGAAAACATGGCCCCCGATGTGGAGATCACGTCACTTATAGCTAGCGGGAAATCTGAGTCTGACTTGGAAACGAAGTCAAATTTTGTTGGGTCTCTGGCAGATGCAAATAAGTTGGTA
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig24  253213 165 +  1162296 tttcagaatactCACCTAATTTCGGAGATGATGGATGCGCTTTTGATTGAGAAGTTGGCTCCAGACGTTGAGATAACCTCCCTGATAGCGAATGGGTTGGCTGTTTCTGACATGCAGACAAAGTCGAGCTTTGTTGGTTCGGTGGCGGATGTCAACGTTTTGGTT
i caeRem4.Crem_Contig24 I 21 C 0
s caeSp111.Scaffold514    62037 165 -   141934 CCTCAGAGAGCACATCTCATTTCGGAAATGATGGACGCTCTTCTTGTGGAGAAAATGGCTCCCGATGTTGAGATTATCAATTTAATTGCAAATGGCTCAACAGACACTACAATGGAGACAAAATCAAGATTTGTTGGTTCCGTTGCGGACGTGAATTTTCTGGTA
i caeSp111.Scaffold514  I 7 C 0
s caePb3.Scfld02_62      361891 164 -   783054 TTTCAGAACACTCATTTGATCCCGGAAATGATGGACGCGCTTCTAGTCGAGAAACTGGCTCCAGATGTGGAAATCATCTCGCTTATTGCTAGTGGATCAGCGGAATCTGATATGGAGACGAAGACAAGTTTTGTCGGCTCGGTGGCTGATGTCAATTTATTGGT-
i caePb3.Scfld02_62     I 20 C 0
s caeJap4.Scaffold17966    1161 165 -   140921 TTTTAGAACACACGTTTGATTTCCGAGATGATGGAGTCTCTGTTGCTTGAAAATTTGGCACCTGATGTGAAAATTATATCATTAATTGCCAACGGTGAAGCTCAATCAGATATGACGAAAAAATCTAGTTTTATTGGTTCCATTTCGGATGTAAATACACTGGTA
i caeJap4.Scaffold17966 C 0 C 0

a score=91.000000
s ce10.chrX             1099324 1 + 17718866 A
s caeJap4.Scaffold17966    1326 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 18
e caePb3.Scfld02_62      362055 0 -   783054 C
e cb4.chrX                 7207 0 + 21540570 C
e caeSp111.Scaffold514    62202 0 -   141934 C
e caeRem4.Crem_Contig24  253378 0 +  1162296 C

a score=-4356.000000
s ce10.chrX             1099325 15 + 17718866 GTCATCCCTAATATC--
s cb4.chrX                 7207  2 + 21540570 --------------GG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253378  2 +  1162296 --------------TG-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      362055  5 -   783054 ------------ATAGC
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17966    1327 18 -   140921 I
e caeSp111.Scaffold514    62202  0 -   141934 C

a score=-908.000000
s ce10.chrX             1099340 15 + 17718866 AAAATTTTATGAAAG--
s cb4.chrX                 7209  8 + 21540570 ---------TCAATATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253380  6 +  1162296 ---------TGAAAG--
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      362060 11 -   783054 I
e caeJap4.Scaffold17966    1327 18 -   140921 I
e caeSp111.Scaffold514    62202  0 -   141934 C

a score=-3354.000000
s ce10.chrX             1099355 130 + 17718866 TCTAGACAAACGCTCTTATTGTCAAGACCCAAAAGTGTTAGGCTCGAGGGACGTCAGTTTTAGAAATAGGCTAAAAAACAGTGATAGGAAAATCAGTGATGATGTTGGTTTCAGACAAAAAAGCTACTAG
s cb4.chrX                 7217  14 + 21540570 ------------CTTTCAC---------------------------------------------------------------------AAAATCA-----------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      362060  11 -   783054 I
e caeJap4.Scaffold17966    1327  18 -   140921 I
e caeSp111.Scaffold514    62202   0 -   141934 C
e caeRem4.Crem_Contig24  253386   0 +  1162296 C

a score=0.000000
s ce10.chrX             1099485 15 + 17718866 ACTTAAGTCAAAAGA
e caePb3.Scfld02_62      362060 11 -   783054 I
e caeJap4.Scaffold17966    1327 18 -   140921 I
e cb4.chrX                 7231  0 + 21540570 C
e caeSp111.Scaffold514    62202  0 -   141934 C
e caeRem4.Crem_Contig24  253386  0 +  1162296 C

a score=-11585.000000
s ce10.chrX             1099500 110 + 17718866 --TATCAGGCTATAGA------CCCAAATCCAAAATCTGTATGGCTATCTTAGTCAGCTAAAGTGTTGTATACCCTCCAAAATTTCACCAGGTGGTAGGATAAGCCTGGAGGTCTTCG
s cb4.chrX                 7231   8 + 21540570 --------TCTataga------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253386  14 +  1162296 --TATCCGACtaataa------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      362071  22 -   783054 CTtgtcagtttcaaaatagaat------------------------------------------------------------------------------------------------
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17966    1327  18 -   140921 I
e caeSp111.Scaffold514    62202   0 -   141934 C

a score=-637.000000
s ce10.chrX             1099610 6 + 17718866 AATATA
s cb4.chrX                 7239 3 + 21540570 ---aca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253400 3 +  1162296 ---gca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62202 1 -   141934 -----A
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      362093 0 -   783054 C
e caeJap4.Scaffold17966    1327 18 -   140921 I

a score=42841.000000
s ce10.chrX             1099616 205 + 17718866 GAAAAAAAGCGAAATTTCTAAATTTCA-------AT-TCCAGATTAAAATTATTCGTAATGCACCATCAACTTCTGACGCGAAGCTCTCAAGAATTTTATCAGTATGCGACAAGCTTCCCGCCACAATCAGCTCCACCACTCAAAAGTCACACTTTGACAACCTAGAGGCTTCACCAAAAATATCAACACTTCGTAATATTCATCGAAAAGGT----
s cb4.chrX                 7242 182 + 21540570 gaaaaaaatg---------------------------ttcagataAAAATGATCCGCGAAACGCCTCCAACTaccgatttgaaaatttcgcgaaTCGTCTCAGTATGCCAGAAGATGCCCGAGTCTTTTGCATCTACTGTGGAAAAATTGCATGTAGAAAATTCTGAGGACTCACCCAAACTTTCGGCGCTCCGAAATATCCatagaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253403 187 +  1162296 aaaaaaaagataa---------------------at-tttaGACCAAGATGATCCGCAGCACTCCAGCAACCACTAACAACAACATCGAGCGAATTGTTGCTATTTGTGAAAAACTACCAGAGACTCTTGCCTCTACTATCCAAAAATCAAATGTAGAAAACGCGGAAGAGTCTCCAAAGGTGTCAACACTTCGGAACATTCATCGAAA--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62203 207 -   141934 ATATAATAATCAAGCTG-TAGACCTGaattgacatt-ttcagacaaagaCTATCATGATGGCAACACCAACATCCGGTCCCAAAATCTCCAGAATTGTTTCAATGTGTAAGAAGTTGCCCCAGAACATTTCATCTtccgttcaaaaaactcatgtCGATAATTCTGAAGCTTCTCCGAAAGTTTCAGCTTTTCGGAACttatctcgaaa--------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      362093 174 -   783054 ----------------------------------AT-TCCAGACTAAAACCATCCGCAGCATTCCACCTACCGCGGATCCTAAACTCTCTCGTATCTTGACCGTTTGCAATAAGCTTCCTGACAACATTGTTTCCACCGTTCAAAAATCCCACGCTGATAACACGGAAGCTTCACCAAAAATGTCTGCTCTTCGGAACATTCATCGCAA--------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    1345 196 -   140921 gaaaaaaagttgataTT-----------------ATATTCAGATCAAAGTTCTTAGAAGCATTCCATTAGACACAAATCCAGAATTAGCAAGAATAAAATCGCAATGCGAGAAGTTACCACCGTCTTTCACTTCTACAAATGACAAAAATCAGAGTGCGAATTGGGATAGTCCAGAAAAAGCGTCGACGTTCCGCGCTTTACACAAAAA----AGGT
i caeJap4.Scaffold17966 I 18 I 1138

a score=11576.000000
s ce10.chrX             1099821 110 + 17718866 ATACACCCAAATGGGAACTTTTTTCATAACTGACACTTTTTTTCAGTTCAACACTCATTCAAACGAACCGGTGACTCTTTCAACGATATCAATGA------GCTCGGAGCAAAACA
s cb4.chrX                 7424  72 + 21540570 --------------------------------------------agttcaaaaatctttcaaacgCACCGGAGATTCTTTTTACGATCCAAACGAGCTGCatatgaaaactgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253590  60 +  1162296 --------------------------------------------GGTGCAGCAGTCGTTGAAAAGAACCGGAGACTCGTTTTATGACGC------------TATGGAAGTCAAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62410  63 -   141934 --------------------------------------------aatgcaacattctttgaaaaaatccggCGATTCAGTAAACGAAAT---TGA------ACTGGTTGCCAAAAA
i caeSp111.Scaffold514  C 0 I 16
s caePb3.Scfld02_62      362267  66 -   783054 --------------------------------------------AGTTCAACACTCATTCAAGCGGACCGGGGATTCTTTCAATGATATCAATGA------GATGACAGCCAAAGC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    1541 1138 -   140921 I

a score=-3543.000000
s ce10.chrX             1099931 16 + 17718866 ---------GGGAGAAGCACTAGCT
s cb4.chrX                 7496 13 + 21540570 ---t---tacggCGGAGTA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253650 16 +  1162296 ---CGAAGAAGGAGGAGTT------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      362333 16 -   783054 CATT---GACAGTCGAgca------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    1541 1138 -   140921 I
e caeSp111.Scaffold514    62473 16 -   141934 I

a score=21975.000000
s ce10.chrX             1099947 37 + 17718866 TTTGGAAAAGAGAACTTTGATTTGTTCTACTTAGAGT
s cb4.chrX                 7509 37 + 21540570 TTTGAGAAAGAAAACTTTGATGTGTTCTTTCTGGACT
i cb4.chrX              C 0 I 170
s caeRem4.Crem_Contig24  253666 37 +  1162296 TTCGGGAAGGAGAACTTTGACTTGTTCTTTTTGGACT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62489 37 -   141934 tttgaaaaagagaattttgagCTGTTCCACTTGGATT
i caeSp111.Scaffold514  I 16 I 7
s caePb3.Scfld02_62      362349 37 -   783054 ttcgaaaaagaaaactttgatgtTTTCTACTTGGAGT
i caePb3.Scfld02_62     C 0 I 113
e caeJap4.Scaffold17966    1541 1138 -   140921 I

a score=-4235.000000
s ce10.chrX             1099984 122 + 17718866 ------------------------------------------------------------------------------------------ATAGCCCCAAAAACTACAAAGACGTTGCGGAAGCTGATCGTCTAAAAAAGAAGGCCGAGGAAAGGAGACAGTTGGCTGATTTGGAGAAGCTTCTGGAG---CCAACTCCAGCACCGAAGGAGACT---------------------
s caeRem4.Crem_Contig24  253703 191 +  1162296 ---ACTCATCGTTAGTTTTTTGAC----------ATATTCGAGCtga-----------------------tatgattttttttca-tttcagag-----agAACTATATGGAAGCGAGTGAGATGGAGCGTCGTAAGAATGAAGCAAAggaaagaagacgtcgggaGGAAACGGAGCGGCTGTTGTTG---GATACCCCCACAACAAGCGAACCGGCACCCGCAGCGCAACCACCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62533 221 -   141934 GTAAGTTTGTGTTAATGTTTCGGTTTCTGCTTCAATTTTGAAGCTTGAAAACTTgcgaaatcagaaaaattatcatttttttttgtttttagag-----aaaactACGTTGACGTGAGTGAGGAAGATcggcaaaaaaaagaaacagaagaaaaaaaacgtcaagaagaagtagaTCGCCTTTTCATAAATGATGCGCCCTCGCCAA--AAAATGAC-----CAAAGCAATCT---
i caeSp111.Scaffold514  I 7 I 6
e caePb3.Scfld02_62      362386 113 -   783054 I
e caeJap4.Scaffold17966    1541 1138 -   140921 I
e cb4.chrX                 7546 170 + 21540570 I

a score=-6804.000000
s ce10.chrX             1100106 49 + 17718866 CCAGTGGAAAACAATCTT--------ATTGACTTTTC-------GTC-----TGGTTCAGCTGAAACTA-----
s caeRem4.Crem_Contig24  253894 66 +  1162296 GCAACAAAGGAAGATCTC--------ATCGATTTTTCTGCTTCCACCGTCACTGAGTGAGTTATacttagaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62760 66 -   141934 AGATTTCTCAACGACGCCTGCTACCaagtaattttttcactt--aTC-TTATTCCATGATGTGGGGCTA-----
i caeSp111.Scaffold514  I 6 C 0
s caePb3.Scfld02_62      362499 42 -   783054 TCAATTCAAAACATCACC--------AATAATTATTC-------------------TCAGACAAAACTA-----
i caePb3.Scfld02_62     I 113 I 61
e caeJap4.Scaffold17966    1541 1138 -   140921 I
e cb4.chrX                 7546 170 + 21540570 I

a score=-5181.000000
s ce10.chrX             1100155 38 + 17718866 ------ACAGCGAACA-----TCTCAGTGACTCAACATCAGTGTCCCCC
s cb4.chrX                 7716 32 + 21540570 ATGGACAATATCTCTAGTGATTC----TGCTCCAAT-------------
i cb4.chrX              I 170 C 0
s caeRem4.Crem_Contig24  253960 36 +  1162296 acaaaaaaaaccaataaagtATCACAGCGATCCGAC-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62826 40 -   141934 ----ATCAAATCATCA-----TTTCAGTGGCTTGACAAAGGAATCTTCT
i caeSp111.Scaffold514  C 0 I 12
e caePb3.Scfld02_62      362541 61 -   783054 I
e caeJap4.Scaffold17966    1541 1138 -   140921 I

a score=-11997.000000
s ce10.chrX             1100193 33 + 17718866 GAGCCTCTC----ACA---TCTACAG---------------------------AAGAACTTCAGATT
s cb4.chrX                 7748 27 + 21540570 AACTATC------AAG---GCTTCAG---------------------------CTGCA-ACCAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  253996 39 +  1162296 AAGTATCTCACCGGAGCCTGCTGCAG---------------------------ATGAG-AGTAAAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62878 50 -   141934 -------------GAA---TTTCTGGAACCGACAGCACCTGCAAGTGTACTTACTGAA-TACACACA
i caeSp111.Scaffold514  I 12 C 0
s caePb3.Scfld02_62      362602 30 -   783054 -------------gaa---gctgaagaacTCAT--------------------CAGAA-ATCAAGCA
i caePb3.Scfld02_62     I 61 C 0
e caeJap4.Scaffold17966    1541 1138 -   140921 I

a score=-22107.000000
s ce10.chrX             1100226  83 + 17718866 GGTGATCAAGGAGTT-------------------------GGTGGCGAG--CAACGAGGAA------AACTTGCTAAACTGAA-------AAGTTTGAGCGATAGGATGAAGAAGGGTAAGAA
s cb4.chrX                 7775  86 + 21540570 ---TGCCCCAA--TT---------GCCAACAACAACT----TTACTGAA--AATAAGGATCTCATTGACTTTTCGACGCTTTA-------CACTACTACTGAGTAAGCTATGA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  254035  86 +  1162296 ---TGTCGAGACGTC---------ACCAGAATCCACTCAAGCCACTGAA--GCTGGAGGAC------GGTTGGCGAAGTTGAA-------GAGTTTGAGTGATCGAATGAAGA----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    62928 108 -   141934 AATAGAAAGAACACCTAACGGAAGTCCACAAGATGTGCAAGCTGTTGAA--GTTAGAGGAA------GTCTTGCCAAGCTGAA-------AAGTTTGAGTGATCGAATGAAGAAAGGTACTGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      362632 104 -   783054 GTTAGTCAGGAAGTT-------AGTACAAAAGAAGATC---TCATCGACTTGTCTCCAAAC------GTCTCTCCAAAGTGAGTTTCAACATATCAAAGCAACacataaaagaaaaaaaa---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    2679  77 -   140921 -------------------------------GATGTTCAAGCCAATGAT--AGCCAAGGAA------GTTTCTCCAAGCTTAA-------AAATTTTGGAGACAAATTTAAAAAGGGTAATAA
i caeJap4.Scaffold17966 I 1138 I 43

a score=191.000000
s ce10.chrX             1100309 2 + 17718866 GA
s caeSp111.Scaffold514    63036 2 -   141934 GA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      362736 0 -   783054 C
e caeJap4.Scaffold17966    2756 43 -   140921 I
e cb4.chrX                 7861 0 + 21540570 C
e caeRem4.Crem_Contig24  254121 0 +  1162296 C

a score=12.000000
s ce10.chrX             1100311 18 + 17718866 TTACTATTTTACTAAGTT
s cb4.chrX                 7861 15 + 21540570 -TCTTTTTTCTGT--CTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      362736 18 -   783054 ttacattttcagtAGCTC
i caePb3.Scfld02_62     C 0 I 208
e caeJap4.Scaffold17966    2756 43 -   140921 I
e caeSp111.Scaffold514    63038  0 -   141934 C
e caeRem4.Crem_Contig24  254121  0 +  1162296 C

a score=-4720.000000
s ce10.chrX             1100329 95 + 17718866 GAGCTAATTTTTTTGGGAAGTACCAGGCAGAGCGGATTACCTGCGTAGTTAAAGTTCGAGTAGTGAAAGGACGCAGAAATTGAACTGTTGGAGAA-
s cb4.chrX                 7876 74 + 21540570 AATGTAATTTTTTCT-ACAGTGATGTGATAAGCA---TACCCTC------------CGAGCCCtcaaaagaagagaaatcTG------TGGAAAAG
i cb4.chrX              C 0 I 144
s caeRem4.Crem_Contig24  254121 54 +  1162296 AAGGTTAGATTTACTGACAGGAAGG-----AGCA---CTCCTGC------------TAAATATCATAAAAGCGA----------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      362754 208 -   783054 I
e caeJap4.Scaffold17966    2756 43 -   140921 I
e caeSp111.Scaffold514    63038  0 -   141934 C

a score=-454.000000
s ce10.chrX             1100424 119 + 17718866 TTTCGGCATTTAGAAGAAATTACCATTTTCCGGCAATCTGTGATTGCTGAAATTCCACGCACCTCTGAAATACGTGGTTGAAAAACTGATTCTTAACATTTTAAAATGAACTTTAGTCC
s caeRem4.Crem_Contig24  254175  74 +  1162296 ---CGACatc------aaaatacaaatttcCCTGATTCTG----TCTTGGTATTTCCC-------------------------AATTGAGCTTTA-------CACATGAATACTAGACC
i caeRem4.Crem_Contig24 C 0 I 55
e caePb3.Scfld02_62      362754 208 -   783054 I
e caeJap4.Scaffold17966    2756  43 -   140921 I
e cb4.chrX                 7950 144 + 21540570 I
e caeSp111.Scaffold514    63038   0 -   141934 C

a score=0.000000
s ce10.chrX             1100543 5 + 17718866 TCCCA
e caePb3.Scfld02_62      362754 208 -   783054 I
e caeJap4.Scaffold17966    2756 43 -   140921 I
e cb4.chrX                 7950 144 + 21540570 I
e caeSp111.Scaffold514    63038 0 -   141934 C
e caeRem4.Crem_Contig24  254249 55 +  1162296 I

a score=-501.000000
s ce10.chrX             1100548 38 + 17718866 CTTTCAATTAGCTTTCAGTTCCATCCAGCGCGAATTCT
s caePb3.Scfld02_62      362962 15 -   783054 ttttcaaaaaacttc-----------------------
i caePb3.Scfld02_62     I 208 C 0
e caeJap4.Scaffold17966    2756 43 -   140921 I
e cb4.chrX                 7950 144 + 21540570 I
e caeSp111.Scaffold514    63038  0 -   141934 C
e caeRem4.Crem_Contig24  254249 55 +  1162296 I

a score=-1672.000000
s ce10.chrX             1100586 22 + 17718866 CAAACATACAT-----------ATTAGCTAGAG
s caeSp111.Scaffold514    63038 30 -   141934 CAAACATATTTATTGGCAAACGGTCAAT---AT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      362977 18 -   783054 --------ctt-------aactatcattttgat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    2756 43 -   140921 I
e cb4.chrX                 7950 144 + 21540570 I
e caeRem4.Crem_Contig24  254249 55 +  1162296 I

a score=1614.000000
s ce10.chrX             1100608 4 + 17718866 TTTT
s cb4.chrX                 8094 4 + 21540570 ttgc
i cb4.chrX              I 144 C 0
s caeRem4.Crem_Contig24  254304 4 +  1162296 ttcc
i caeRem4.Crem_Contig24 I 55 C 0
s caeSp111.Scaffold514    63068 4 -   141934 TTTT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      362995 4 -   783054 ttcc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    2756 43 -   140921 I

a score=70610.000000
s ce10.chrX             1100612 307 + 17718866 AGGAATCACACAATCCAACACCCTATCCGACATCCGTGAGCACCTCCGTCGTTCGGGATCATTTGTAAAACCACCTCCGTCAGGCATCCCCACTAGCAGCAGTGAGCAAAACCTACCAGACGTTGCTACA---GGTCCACGTGACGATATTCTGGCTAAGTACGCGTCGATATCATCGATTAAAGAGCAAAAACCAGCGCT---CGGGAATCTAATTGATGGCACTGCCTCTG-----------------------CCTCA--------------TCGACTCCGAGAAAAGAGCC--------------------------ACTGGAGCCGTATTATTCGTCTGAAAATCTGGTTGGTTGTCGG------------TAAGTTTTTTAA
s cb4.chrX                 8098 299 + 21540570 AGGTATCACTCAGTCTAACACACTTTCTGACATACGGGACCATCTTCGTCGAAGCAGTTCTCTTGCAAAACAA---CCAAGCGGGATGGTGAGCAGTGCAAGTGCTCAAAACATACCAGATACAGAAAA---------AGGAGATTCGATTCTAGCAAAGTATGCCTCAAATTCGTCaattaaaatcgaaaaatcgacatt---CACAAAGCTGACT---GACACTAAGTCAA-------------------------------------------TGCCAAAAAACACGGAGAT--------------------------GTCTGAGCCATACTATTCTCCAGAAAATCTTACTTCCTGCAGGTTAGTTGAAGCATAGTACGTTT--
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  254308 287 +  1162296 aggaaTCACTCAATCCAACACACTCTCTGATATCCGTGGACATCTTCGTCGAAGCGGCTCACTCATCAAACCA---------GGAATGGTGACAAGTGCCAGTGACCAAAACTTGCCGGATGCTGCAAAT---GTGCCAAGAGATGACATTCTTGCAAAATACGCATCAATTTCCTCGATCAAACAGGAAAAACCACCACT---CACCAAGCTGATTAGCGACAACAAGTC----------------------------------------------GTCAGCAAGATCTGAAGT--------------------------CACAGAGCCATATTACTCACCGGAAAATCTGGTTTCGTGCAGG------------tagaaattgt--
i caeRem4.Crem_Contig24 C 0 I 31
s caeSp111.Scaffold514    63072 296 -   141934 AGGAATCACACAATCTAATACTCTTTCTGACATCCGTGATCATCTTCGTCGCAGCGGCTCCGTGGCCAAACAC---TCGGGGGGTCTTGTGTCAAGCAGTAGCGAACAAAACATACCAGACCCGGCAAAT---GGTCCACGAGATGATATATTGGCAAAATATGCGTCTATTTCATCTATCAAGGAAAACAAGCCGGTCTTAATGGCAAAGCTCACCA--GTTCATATTGTGG--------------------------------------------Atctcaaaagaaagaaat--------------------------ctcAGAACCGTATTATTCGCCGGATAATCTTGTTAGTTGTCGG------------TAATATTGTT--
i caeSp111.Scaffold514  C 0 I 10
s caePb3.Scfld02_62      362999 289 -   783054 aggACTCACCCAATCCAACACTCTCTCGGACATCCGTGGTCATCTTCGACGAAGTGGTTCATTAGTCAAGCAG---CAGACAGGATTGACAACTAGCAGTAGTGAACAACACCTTTCCGAAGTTGCAAAT---GGACCGAGAGATGATATTCTGGCAAAATATGCATCCATATCCTCTATCAAAGAGCAGAAACCGGTGTTGTCTACAACCCTAGTCAGTGTTCCTGCTGT-------------------------------------------------------GACAAATGC--------------------------TCCAGAACCATACTATTCTTCAGAGAACTTGACCGGATGCAGG------------TAATACTGATAA
i caePb3.Scfld02_62     C 0 I 10
s caeJap4.Scaffold17966    2799 367 -   140921 AGGAATAATTCAATCAAACACTTTCTCGGACTTGCGAGGGCAGTTGCGTCGAAGTGCGTCCCTAATGAAACCA---CAAAGCGGTCTAGTTAGCAGTAGCAGTGAGCAG---TTATTAGGCACACCGACCTCAGGACCCAGAGATGATATTTTGGCAAAGTATGCAACGTCTCCACCAACTAAAGAAGCTAAACAAAGAGC---TGATAACTCAATTACTATTATGGATTCTCATCGGGAAATTGTGAGTTAATTgccttaaaaatttttaaggctgaaaataaaaagcagagctgattttcattttttttttcagcaagaatCCGAACCTTATTATAACTCGGATAACATTGAATCATGCCGGTATGT-------TAAAAAT-----
i caeJap4.Scaffold17966 I 43 C 0

a score=-6456.000000
s ce10.chrX             1100919 24 + 17718866 ---------TTCATCTATATTATCCAGATTATG
s cb4.chrX                 8401  8 + 21540570 ---------TTGAGCAA----------------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold514    63378 17 -   141934 ---------TTGATCAAACCAATACA-------
i caeSp111.Scaffold514  I 10 C 0
s caePb3.Scfld02_62      363298 15 -   783054 ---------TTTTTctag--aataac-------
i caePb3.Scfld02_62     I 10 C 0
s caeJap4.Scaffold17966    3166 24 -   140921 GTTATAAAGTTGATTTAAACTGTC---------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  254595 31 +  1162296 I

a score=147496.000000
s ce10.chrX             1100943 242 + 17718866 GTGTTTCAGGGCTTTTCAAGACACCCTTCGAAAAATGATCACAGTTCTCGGGAACATTTCCTACTTGCCAAGGATCGGGTATCGCAACGAGACAAAGCAAAATGAGTGGGACAAGAAAGTGCTGCTTGGGAGGTTTTTGGATGGAGTCCTCGTGGAAACTGAGCACAGGAGAGAGTACGGGCTTGCGGCTCAGTTGAGAGAAGTCAAGCGATGCATCGAACTCTTTGAGCACGCTGGGTAAG
s cb4.chrX                 8409 228 + 21540570 --GTTTCAGAGCATTCAAAGACACTCTCCGTAAAATGATCACGGTTCTTGGAAACGTCTCCtatcttccaaaaattgggTGTAGGAGCGAGATGaaagaaa------tgagcaaaaaagttCGTTTGGACAGTTTTCTGGACGGTGTTCTTGTTGAAACGGAGCACCGCCGAGAATATGGACAAGCTGCTCAACTCCGTGAGGTGAAGCGGTGCATCGAACTGTTCGAGAACG------AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  254626 242 +  1162296 atttttcagagcATTCAAGGATACTCTCCGCAAGATGGTCACTGTGCTTGGAAATGTCTCCTACCTTCCAAGAATTGGGTATCGAAATGAGACCAAGGACACTTCGGTGGGCAGAAAAGAGCTTCTTAACAAATTTCTCGATGGAGTTCTCGTGGAGACGGAACACCGACGAGAGTACGGACAGGCTGCACAGTTGCGTGAAGTGAAGAGATGTATTGAGCTTTTCGAGAATGCTGGGTAAG
i caeRem4.Crem_Contig24 I 31 C 0
s caeSp111.Scaffold514    63395 239 -   141934 TGATTTCAGAGCATTCCAAAATactcttcgaaaaatggtGACCGTTCTTGGGACCATTTCGTATCTCCCAAAAATTGGTTATCGTAATGAGCTAAGGGAGAGTC---TAGGCAAAAAAGAGCTACTTGCACGTTTTATTGACGGATTATTGGTGGAAACAGAACACAGAAAGGAGTATGGCCAGGCAGCACAACTACGCGAAGTGAAACGGTGCATCGAGCTGTTCAAGCACTCtgagtgag
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      363313 242 -   783054 ttttttcagagctttccAAGACACACTTCGCAAAATGATCACCGTACTTGGAAACATTTCCTACCTACCCAGAATCGGATAcagaaatgaattcagaagTACACAAATGGTCAAAAAAGAACTACTTGGCCTGTTCATCGATGGAGCTCTTGTTGAAACAGAGCACAGAAGGGATTATGGACTAGCTGCCCAACTTCGTGAAGTCAAGAGATGcattgagctttttgagcatAATGAGTAAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    3190 241 -   140921 -ATTTTTAGAGCTTTCCAAAACACGTCACGCAAGATACTCACAGTACTTGGCAACATTTCGTATTTTCCTAGAATCGGATATCGAAATAGCTCTTGCACGActttaaacaataaaaaagtgTTGATGGAGCAATTTTTGGATGGAGTTTTGGTGGAAACCGAGCATCGACGCGACTACGGTCAAGCTGCGCAGATACGAGAAGTGAAGCGTTGCATAGAACTTTTTGAACATGATGGGTGGG
i caeJap4.Scaffold17966 C 0 I 1237

a score=-5257.000000
s ce10.chrX             1101185 35 + 17718866 AGCGGGAATGAAACTATTCGAAAAACATTATTTCA
s caeRem4.Crem_Contig24  254868  1 +  1162296 -----------------------------A-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    63634 23 -   141934 -----aaaaaaaatggtctgaaa------aattt-
i caeSp111.Scaffold514  C 0 I 11
s caePb3.Scfld02_62      363555 19 -   783054 -----Gagca-----gtttgaaa------atttca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    3431 1237 -   140921 I
e cb4.chrX                 8637  0 + 21540570 C

a score=0.000000
s ce10.chrX             1101220 11 + 17718866 AGCAGTGAAAT
e caePb3.Scfld02_62      363574  0 -   783054 C
e caeJap4.Scaffold17966    3431 1237 -   140921 I
e cb4.chrX                 8637  0 + 21540570 C
e caeSp111.Scaffold514    63657 11 -   141934 I
e caeRem4.Crem_Contig24  254869  0 +  1162296 C

a score=-3267.000000
s ce10.chrX             1101231 129 + 17718866 ACGCGATAGAAACAATCTTCATTTTTATAATGGATGACATTTTTCGAAGGTTCATACaggcttaagcttaggcttaggcttaggattaggctcaggcttcggctaagactgagccttaggcgaaagctt
s caeRem4.Crem_Contig24  254869  14 +  1162296 --------------------ATTTTT--------------------------------------------------------------------------------------------GGCTAGAG---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      363574   0 -   783054 C
e caeJap4.Scaffold17966    3431 1237 -   140921 I
e cb4.chrX                 8637   0 + 21540570 C
e caeSp111.Scaffold514    63657  11 -   141934 I

a score=-6477.000000
s ce10.chrX             1101360 99 + 17718866 tggcataggcttagatttaggtcaaggcttaagcttagactCTTTTCATACTAGCCAAATTCCATATCCTCAGTATTGATTTGTAGATGAGACCTTTAA
s caeRem4.Crem_Contig24  254883 20 +  1162296 -----------------------------------------------GTGCCAGAAAAATTGTGTCT--------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      363574 15 -   783054 ----------------------------------------------tggtATACATAAGTT--------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966    3431 1237 -   140921 I
e cb4.chrX                 8637  0 + 21540570 C
e caeSp111.Scaffold514    63657 11 -   141934 I

a score=182.000000
s ce10.chrX             1101459 2 + 17718866 AA
s caeJap4.Scaffold17966    4668 2 -   140921 AA
i caeJap4.Scaffold17966 I 1237 C 0
e caePb3.Scfld02_62      363589 0 -   783054 C
e cb4.chrX                 8637 0 + 21540570 C
e caeSp111.Scaffold514    63657 11 -   141934 I
e caeRem4.Crem_Contig24  254903 0 +  1162296 C

a score=3411.000000
s ce10.chrX             1101461 6 + 17718866 ATTTCA
s caeRem4.Crem_Contig24  254903 6 +  1162296 GTTTCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    63668 6 -   141934 ATTATA
i caeSp111.Scaffold514  I 11 C 0
s caePb3.Scfld02_62      363589 6 -   783054 ATTTCA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    4670 6 -   140921 ATTTTA
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                 8637 0 + 21540570 C

a score=75560.000000
s ce10.chrX             1101467 140 + 17718866 GCGTTGAAATCCTCATGGACCATTTGAAATTGAATGAAGCTGAGCAGGACAAAATCGTAAATGGAATGCGTGAGGAACGTGCTTCACTAATGAGAAAATCGAATGATATCTCTTCGTTGGAGCAAAGAGTTTTGTTGTAA
s cb4.chrX                 8637 140 + 21540570 GCGTGGAAATACTTATGGATCATTTAGTTGGAAACGAGGTGGAACAAGACTTTCTTGTCAGACAAATGCGAGAAGAAAGAGCTATTTTGATGAGAAAATCTAACGATATCTCTTCAATGGAGCAAAGAGTTTTGCTGTGA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24  254909 140 +  1162296 GAGTGGAGATCCTTATCGAGCATCTCAAGCTAAACGAAATTGAGCAGGCAGACGTCGTGAATGTTATGCGGGAAGAACGTGCCACGTTGATGCGAAAATCCAATGACATTGTTTCGCTGGAGCAGCGGGTTCTTTTGTAC
i caeRem4.Crem_Contig24 C 0 I 59
s caeSp111.Scaffold514    63674 140 -   141934 GTGCCGAGATCCTTCTTGAACATCTCAAACTGGACGTggcaaaacaagaaaaaactgttattGATATGCAAGTGGATCGAGCAAACTTGATGAGAAAAGCGAACAATATCTCGTCGTTGGAACAAAGAGTGTTGTTGTGA
i caeSp111.Scaffold514  C 0 I 232
s caePb3.Scfld02_62      363595 140 -   783054 GTGTTGAGATTCTATTGCAACACCTCAAAATGAACGAAGCAGATCAAGACAAGGTGGTCAGTGAGATGAGAGAAGAACGGGCTAATTTGATGAGGAAATCAAACGACATTTCGTCTTTGGAACAAAGAGTcttattgtga
i caePb3.Scfld02_62     C 0 I 27
s caeJap4.Scaffold17966    4676 140 -   140921 GGGTACACAAACTGATcgacaatttgaaaatgaatgaaaGCAATCAAGAAGAAATCATAGCTGGTATGCGGGAAGAACGTGTTAGCCTGATGAGACGATCGAATGATTTATCCTCATTGGAGCAACGTGTTTTATTGTAg
i caeJap4.Scaffold17966 C 0 C 0

a score=-32261.000000
s ce10.chrX             1101607 32 + 17718866 ---GCATCC----------------------------TTCCTTTATCTGTAAATT--------------TTCAT------------------------CGA
s cb4.chrX                 8782 26 + 21540570 -------------------------------------ttttctaattttttgaat--------------acaat------------------------ACA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24  255108 98 +  1162296 ---GCATCTTGTTCAAAACCAAGGACTCttagaaatgttttaaaattatatcAATTTACCAGATCCTTATCAATTGCATTGTTACCTACTCAGGTTCAACA
i caeRem4.Crem_Contig24 I 59 C 0
s caeSp111.Scaffold514    64046 35 -   141934 ----------TCTCAAAAATGAGC-------------TTCCCCTAGGTTGtaatt----------------aac---------------------------
i caeSp111.Scaffold514  I 232 C 0
s caePb3.Scfld02_62      363762 45 -   783054 ---ggatttttttcaaa--------------------tacccATAAATCATGATTCTAT----------TCAACC-----------------------ATA
i caePb3.Scfld02_62     I 27 C 0
s caeJap4.Scaffold17966    4816 38 -   140921 gttatatttttttttgaacta----------------cTGTAatctgtctgaaa-----------------------------------------------
i caeJap4.Scaffold17966 C 0 I 295

a score=136006.000000
s ce10.chrX             1101639 244 + 17718866 TTTTCA-----TTATTTTAGAAACCGCCGGCTCACCGAGCAAATCCTCGTTGATTTCCTCATGCGCACTTTTCTGGAAACGGGCTTCA---ACAACAAGCACACAGTTGGCAAAACTCAGGAAGTGACGGCCGTGCTCAAGTTTTACGACGAATTCAAATACCTTCGAGCTCAGGATGAACGTGCCGAGTTTTTGAAGAATCTACTCACATTTTTGAGGGATCGCTTGATGCAAAACGTGGATTGGAATGTA
s cb4.chrX                 8808 247 + 21540570 TATGCA-----ATTCTTTAGGAATCGTCGCCTCACGGAACAAATTCTGGTTGACAATTTGATTCAAACATTTCTCGAGACTGGATTCCAAAATAGCAAGCTAGCCAGCGGTAAAACCCCTGAAGTGGTTGCAGTGGGCAAGTTCTACagcgaattcaaatttcttcaagCACACGACGAGCGTGCCGagtttcttcaaaacttgCTCACCTATCTAAGAGAGCGTTTGATGCAAAATTACGATTGGAACGTa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  255206 244 +  1162296 TTAACA-----AATTTACAGGAACCGCCGTCTCACAGAGCAGAATCTGGTCGATTTCTTAATGCGAACATTCTTGGAAACCGGATTTC---ACACCAAACACGCAGTTGCAAAGACTCCAGAAGTTGCTGCTGTTCTCAAGTTCTACGATGAGTTCAAATATCTTCAAGCAAACGATGAACGTGCGGAGTTCTTGAAAAACTTACTTGCATATTTGAAGGACCGTCTTATGCAAAACGTGGATTggaatgta
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    64081 236 -   141934 tt----------tttttcagaaaccgCGATCTAACCGAACAAATTCTCGTTGACTACCTAATGCGAACTTTCTTGGAAACTGGGTTTC---ATAGTAAATATATTGTTGGAAAAACCCCAGAGGTTGCTGCGGTCCTCAAATTTTACGAGgagttcaaaaatctccAAGCTCAGGACGAACGAGCCGagttcctgaaaaatttgatggAATATCTAAAAGAACGATTGCTACAAAATCCTGATTGGAGT---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      363807 236 -   783054 TT----------ATTTTCAGGAACCGTCGACTCACGGAGCAAATTCTCGTCGATTTTCTCATGCGCAATTTCTTGGAAACCGGCTTCC---AAACCAAAAACACATCcgcaaaaactgaagaagttaTTGCTGTGATGAAGTTTCATGAAGAATTCAAACATCTGGAAGCACATGATGAAAGAGCGGAgtttatgaaaactttgatggTGTATTTGAAAGAAAGGCTGATGCAAAATATTGATTGGAAC---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    5149 249 -   140921 ttttcacgatgAAAATTTAGGAACCGGCAattaactgaagaaattattGTCGATTTTCTGATGCGGACGTTTTTGGAAACTGGATTCA---GTCAAAAGAATGTGAATGGAAAGACTGCAGAAGTTGCAGCTGTGTTGAAGTTTTACGAAGAGTTTAAAAGCCTACTTGCTCACGATGAGCGTGCAGAGTTTTTACAAAATCTTTTGACCTATTTGAAAGAGCGACTTTTTATGAATTTGGACTGGAATGTG
i caeJap4.Scaffold17966 I 295 I 398

a score=436.000000
s ce10.chrX             1101883 3 + 17718866 AGG
s cb4.chrX                 9055 3 + 21540570 agt
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig24  255450 3 +  1162296 agt
i caeRem4.Crem_Contig24 C 0 I 123
e caePb3.Scfld02_62      364043 0 -   783054 C
e caeJap4.Scaffold17966    5398 398 -   140921 I
e caeSp111.Scaffold514    64317 0 -   141934 C

a score=0.000000
s ce10.chrX             1101886 27 + 17718866 AAGCTAGTATAAAGAAGCTAGTAATTT
e caePb3.Scfld02_62      364043  0 -   783054 C
e caeJap4.Scaffold17966    5398 398 -   140921 I
e cb4.chrX                 9058 32 + 21540570 I
e caeSp111.Scaffold514    64317  0 -   141934 C
e caeRem4.Crem_Contig24  255453 123 +  1162296 I

a score=455.000000
s ce10.chrX             1101913 5 + 17718866 ATAAA
s caeJap4.Scaffold17966    5796 5 -   140921 ATAAA
i caeJap4.Scaffold17966 I 398 C 0
e caePb3.Scfld02_62      364043 0 -   783054 C
e cb4.chrX                 9058 32 + 21540570 I
e caeSp111.Scaffold514    64317 0 -   141934 C
e caeRem4.Crem_Contig24  255453 123 +  1162296 I

a score=69007.000000
s ce10.chrX             1101918 129 + 17718866 TGGTTTCAGTTTGCCACGGATACAATGATGTCGCGAGCCATGACAACCATCGAGCGTTATGTGATTTTTGCGGTTTATGATAACGCATTCTACCCGAATAGAGATGCGGATCATCACAGAGACAAGTGA
s cb4.chrX                 9090 129 + 21540570 TTGTTGCAGTTTGCTACTGAATCTATGATTGCTAGAGCGATGACAACGATGGAGCGTTTTGTAATGTTCGCTGTCTACGAAATCGCTTTTTGGCCGAATAGGGAGATGgatcaaaaaaaagacaagtAA
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig24  255576 129 +  1162296 ATGCTTCAGTACGCAACCGACACTATGCTGGACAGAGCTATGACCACCATTGAGCGCTATGTAATGTTTGCTGTATACGACACCGCATTCCATCCGAATAAAGAAGCGGAAACACATAGAGACAAGTAA
i caeRem4.Crem_Contig24 I 123 C 0
s caeSp111.Scaffold514    64317 120 -   141934 ---------TGGGCGACAGACTCGATGGTAACCAGAGCAATGGGAACAATTCAGCGATACGTCATGTTCTCCGTCTATGAAAATGCTTTTCGCCCGAACAAAGACGTTGATATTCATAGAGACaagtta
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      364043 120 -   783054 ---------TTTGCCACGGAGTCAATGCTTACAAGAGCAATGTCTACCATTGAACGATATGTGATTTTCTCTGTCTATGAATCTGCCTTCTTCCCCAATCGTGATGTTGATGTGAATAGGGATAGGTAA
i caePb3.Scfld02_62     C 0 I 18
s caeJap4.Scaffold17966    5801 129 -   140921 TTATTTCAGCATGCTACCGATTCAATGGTAAATCGAGCTATGAAAACTATTGAGCGATATGTCATGTTCTCGGTCTATGATGCAGCATTTTACCCGAATTGTGAAATAGATAAACACCGTGACAAGTTA
i caeJap4.Scaffold17966 C 0 C 0

a score=1000.000000
s ce10.chrX             1102047 1 + 17718866 G
s cb4.chrX                 9219 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  255705 1 +  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    64437 1 -   141934 g
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966    5930 1 -   140921 G
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364163 18 -   783054 I

a score=726.000000
s ce10.chrX             1102048 2 + 17718866 GA
s cb4.chrX                 9220 2 + 21540570 AA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24  255706 2 +  1162296 AA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    64438 2 -   141934 aa
i caeSp111.Scaffold514  C 0 I 1
e caePb3.Scfld02_62      364163 18 -   783054 I
e caeJap4.Scaffold17966    5931 0 -   140921 C

a score=612.000000
s ce10.chrX             1102050 22 + 17718866 TTTTTTGAGACTTGGGAGCTTT
s caeRem4.Crem_Contig24  255708 19 +  1162296 TTTTCT---ACTTTGGATTTTT
i caeRem4.Crem_Contig24 C 0 I 16
e caePb3.Scfld02_62      364163 18 -   783054 I
e caeJap4.Scaffold17966    5931  0 -   140921 C
e cb4.chrX                 9222 33 + 21540570 I
e caeSp111.Scaffold514    64440  1 -   141934 I

a score=0.000000
s ce10.chrX             1102072 378 + 17718866 CAACAAGTGTAATAGCTAGAAACTGTGATGAAAAATTTGGCTTACTCTTGAAGCCATGCTCCAGAAATTTTGTGCAAAAATTGTGGCTTTTAAGCTTAAAATTGCTATTTAATATTAAGGGAGgggggcagatagctcagtcggtagtggtggccgctagcagtctggaggtcacgagttcaattttggcctcaccccctaggttcacccagcctctattgggaagtggagcaatccacgactggattaacggccacagcccccggctaggacgtggcttaaattacagctcagagggatcaccaccaggcagtgtacctgaatcccagatccgcagtgcatagcacttgaagaacggatcgtcctttaatccttttt
e caePb3.Scfld02_62      364163  18 -   783054 I
e caeJap4.Scaffold17966    5931   0 -   140921 C
e cb4.chrX                 9222  33 + 21540570 I
e caeSp111.Scaffold514    64440   1 -   141934 I
e caeRem4.Crem_Contig24  255727  16 +  1162296 I

a score=324.000000
s ce10.chrX             1102450 13 + 17718866 ttaatcGAAAACC
s caeJap4.Scaffold17966    5931 13 -   140921 TTGAacaaaatca
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364163 18 -   783054 I
e cb4.chrX                 9222 33 + 21540570 I
e caeSp111.Scaffold514    64440  1 -   141934 I
e caeRem4.Crem_Contig24  255727 16 +  1162296 I

a score=478.000000
s ce10.chrX             1102463 5 + 17718866 AAAAC
s caeSp111.Scaffold514    64441 5 -   141934 aagaa
i caeSp111.Scaffold514  I 1 I 6
s caeJap4.Scaffold17966    5944 4 -   140921 -agaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364163 18 -   783054 I
e cb4.chrX                 9222 33 + 21540570 I
e caeRem4.Crem_Contig24  255727 16 +  1162296 I

a score=-3427.000000
s ce10.chrX             1102468 22 + 17718866 --TTGAACAATA----ATTCATGTTATT
s caeSp111.Scaffold514    64452 21 -   141934 --caCAATAATACGGTATATA-----CT
i caeSp111.Scaffold514  I 6 C 0
s caePb3.Scfld02_62      364181 16 -   783054 --TTCAATATTA----ATTTA------T
i caePb3.Scfld02_62     I 18 C 0
s caeJap4.Scaffold17966    5948 13 -   140921 aattcattttta----a-----------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                 9222 33 + 21540570 I
e caeRem4.Crem_Contig24  255727 16 +  1162296 I

a score=422.000000
s ce10.chrX             1102490 1 + 17718866 T
s caeRem4.Crem_Contig24  255743 1 +  1162296 t
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold514    64473 1 -   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      364197 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    5961 1 -   140921 c
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                 9222 33 + 21540570 I

a score=195218.000000
s ce10.chrX             1102491 357 + 17718866 TCTCAGGTTGCTCCGTGGAACCATCGCCAAAGTTTCTGACGTAGTCACGCCGGTCAACGACTTTTTGAAAATTCCAGAAGtttatttt--------ttattatttgttttt-----tattgaattgaaaaaaattGACTAACATATTGTACACAATAAAAATTGCAGCACCTCCACGGTGAAGCTCCCTGGCCGTCTGCTCAGGCGGAACTCTCAATGCTGGATATTTATGTGACTGCTCAGGACAAGCTCAACTGTGTGGTCCGATGCTGTGACGTCATCAACAACCTGGTGGCGTTGTCTTCGAAAAACGCGG-TCGCATCCGCAGATGA-CCTCACACCGGTTCTAGTTTTTGTGATTATTAAGGTGAG
s cb4.chrX                 9255 330 + 21540570 TTTCAGATTATTGCAATCTGTCATTGGGAAAGCATCAAGCTCTGTGACTCCCGTCCACGAAgcattgaaaattccagagg-tTTGACTGTAATCA-TTCCTGCAAATACCtgattatttttaat--------------------------------------tttagcaTCTTCTCGGAGAAGCCCCATGGCCATCTGCTCAAGCTGAATTGTCAATGCTCGACAATTACGTAACAGCTCAAGAAAAACTCAACTGTCTTGTCCGTTGTTGTGATGTCATCAATAATTTGGTGGCATTGTCATCAAAAAATGCAG-TAGCATCTGCGGATGA-CTTAACACCAGTTCTAGTTTTTGTCATTATCAAGGTAAA
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24  255744 326 +  1162296 tttcagacttctgaaAAACACTATTGCAAAAGTGGCGAATGTTGTGACACCAGTGAACGACTTCCTGAAGATTCCAGAGGTTTTTACCTTAAAAA-CTTCTACTGACAACC-----TTCTAATT--------------------------------------TTTAGCATCTGCACGGAGAAGCTCCATGGCCGTCTGCCCAGGCCGAGTTGTCAATGCTGGACATCTACGTGACTGCTCAAGACAAGTTGAACTGTGTGGTTCGTTGCTGTGATGTCATCAATAATCTTGTGGCattgtcttcaaaaaatgcgg-TGGCGTCTGCTGACGA-TTTGACACCGGTGCTGGTGTTTGTTATTATTAAGGTGAG
i caeRem4.Crem_Contig24 C 0 I 678
s caeSp111.Scaffold514    64474 332 -   141934 TTTTAGATTATTACGAGGAACCATTGCAAAAGTTAGCGATATTGTGACACCTGTCAACGACTTTTTGAATATCCCGGAGGTTTGATCCGTTagatctttcaaattttaaat-----tt-tggaC---------TTT-------------------------TTACAGCATCTTCACGGAGAAGCTCCCTGGCCGTCTGCTCAAGCTGAACTTTGCTTGTTAGACACCTACGTAACTGCACCGGACAAGCTGAACTGTGTTGTGAGATGCTGTGATGTAATCAACAATTTGGTTGCTTTGTCTTCAAAAGATGCGGTTTGCTTCTGCTGATGATTTTGACGCCAGTGTTAGTTTTTGTTATTATCAAGGTAAG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      364198 332 -   783054 GTTCAGATTATTGCAAAAGACTATTGCCAAAGTATCAAGTAACGTCACACCGGTTAATGACTTCTTGAAGATTCCAGAGGTATGTTCTGCAAG---TTGCAACATCTATTT-----TTCTAAACC-----AAATTG-------------------------TTTCAGCATCTACACGGAGAGGCTCCCTGGCCATCTGCTCAAGCAGAACTTCATATGTTGGACGTTTATGTGACTGCCCAAGACAAATTGAATTGTGTCGTGAGATGCTGTGATGTAATCAACAATCTTGTTGCTCTTTCGTCGAAAAATGCAG-TGGCGTCGGCAGATGA-CTTGACTCCAGTGTTGGTGTTTGTCATTATCAAGGTAag
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    5962 330 -   140921 tTTTAGGCTACTACGATTGACAATTGGGAAAGTGGCAAACGTTGTCACTCCGATGCatgattttctaaaaattccagAGGTTGAATTCTCTG----TCACAATTTATGTTT-----TCATAATA---------------------------ACAAGCACATTTTTAGCATCTTCTTAGTGAAGCTCCGTGGCCGTCCGCACAAGCTGAATTATCACTACTGGACATATACGTCACAGCTCAGGACAAGTTGAGCTGTGTTGTACGTTGCTGTGATGTGATCAACAATTTGATTGCTCTTTCATCGAAAAATGCAA-TAGCATCTGCAGACGA-TTTTACTccagttttggtttttgttcTTATCAAGG----
i caeJap4.Scaffold17966 C 0 C 0

a score=-14342.000000
s ce10.chrX             1102848 130 + 17718866 AGAAGCAGTTGAAATTTCGTTTTTGTTTT----GGaaaatattttaaattt-------aatttaaaatttaGGCTTCACCGCTGCAGACTATAGTAATAACTAAAAAGCTGTCAGTTATACATATATCTAGTTAAAACATT---
s cb4.chrX                 9585  27 + 21540570 ---------------------------------TACAGAGGTTTTGATAAC-------GAAGTAAAA-----------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      364530  29 -   783054 --------------------------------------atatttttatattttgtttgGGTTTAAGA-----------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    6292  47 -   140921 ---------------------TTTGTCTTGAAGCGCAAATAAATTTataatttata--gaaaaaaaa--------------------------------------------------------------------------atc
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    64806   0 -   141934 C
e caeRem4.Crem_Contig24  256070 678 +  1162296 I

a score=-11160.000000
s ce10.chrX             1102978 50 + 17718866 TATGTAGTTGAACTTCTTTTTTTTAAATTTCGATATTAGCTTGAAGCTTT
s cb4.chrX                 9612  9 + 21540570 ----------------TAAATTTTG-------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    64806 34 -   141934 --------------TATGAATCCTGAGATTTGAAATTGGTTTCAATCT--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      364559 43 -   783054 ---GTAGCTcatcctctcatttttcagtttt--actcTAATTCAAtcc--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966    6339 10 -   140921 --------------aatttctttt--------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  256070 678 +  1162296 I

a score=110921.000000
s ce10.chrX             1103028 153 + 17718866 CAATTTTC---ATTTCCAGGCGAATCCACGTGCTCTTCTGTCTAACGTGCAATTTGTTGAAACCTTTGCCGGTGACCGCATCGAGTCGGGACGTGATGCTTACTACTGGGTCAACTTCAAGTCGGCTGTTGAATATATCAAGACAATTCTGTGATT
s cb4.chrX                 9621 140 + 21540570 ----------------CAGGCAAATCCCCGTTCCCTTTTGTCAAATCTTCAGTTTATCGAAACATTTGCTGGAGACCAAATTGAATCTGGCCGTGATGCTTACTATTGGGTTAATTTCAAGTCGGCTGTCGAGTACATAAAAACCATTCTGTGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  256748 156 +  1162296 CAATATTCCATATTTCCAGGCTAACCCGCGTGCCCTCCTGTCAAACCTCCAATTCATCGAAACATTCGCTGGTGATCGGATTGAATCTGGCCGTGACGCCTACTACTGGGTCAACTTCAAGTCCGCTGTTGAATATATCAAGACCATATTGTGATT
i caeRem4.Crem_Contig24 I 678 C 0
s caeSp111.Scaffold514    64840 145 -   141934 -----------ACTTCTAGGCCAACCCTAGAtcacttctttcaaatttacaATTCATCGAGACATTTGCTGGTGACCTTATCGAATCTGGCCGCGACGCTTATTATTggactattttcaaatcggCTGTGGAATacatcaaaacaattttgtaAAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      364602 146 -   783054 ----------aaatttcaggccaaCCCACGTGCTCTTTTGTCGAACTTGCAATTCATTGAAACGTTTGCCGGTGATCGCATCGAATCGGGTCGAGATGCATATTACTGGGTCAATTTCAAATCTGCTGTTGAATAcatcaaaactattttataATT
i caePb3.Scfld02_62     C 0 I 1586
s caeJap4.Scaffold17966    6349 137 -   140921 -----------------AGGCAAATCCACGTTCTCTTCTTTCAAACTTGCAGTTTATTGAAACGTTTGCTGGTGATCGTACGGCTTCAGGAAGGGACGCATATTATTGGACAAATTTTAAATCCGCTGTGGAATATATCAAAACTATTTTGTAG--
i caeJap4.Scaffold17966 C 0 C 0

a score=-2847.000000
s ce10.chrX             1103181 9 + 17718866 --GTATATTTT
s cb4.chrX                 9761 8 + 21540570 ---TGATTTTG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  256904 8 +  1162296 ---TCCCTCCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    64985 9 -   141934 --GTGTTTCTT
i caeSp111.Scaffold514  C 0 I 625
s caeJap4.Scaffold17966    6486 9 -   140921 AAAtgtttt--
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364748 1586 -   783054 I

a score=311.000000
s ce10.chrX             1103190 2 + 17718866 GA
s cb4.chrX                 9770 2 + 21540570 GA
i cb4.chrX              I 1 I 591
s caeJap4.Scaffold17966    6495 2 -   140921 aa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeSp111.Scaffold514    64994 625 -   141934 I
e caeRem4.Crem_Contig24  256912 0 +  1162296 C

a score=1699.000000
s ce10.chrX             1103192 11 + 17718866 ACCaaattatt
s caeRem4.Crem_Contig24  256912 11 +  1162296 ACCAAATTTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966    6497  9 -   140921 --caaattttt
i caeJap4.Scaffold17966 C 0 I 7139
e caePb3.Scfld02_62      364748 1586 -   783054 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I

a score=582.000000
s ce10.chrX             1103203 11 + 17718866 tttttttgaat
s caeRem4.Crem_Contig24  256923 11 +  1162296 TTATATTGAAT
i caeRem4.Crem_Contig24 C 0 I 291
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I

a score=0.000000
s ce10.chrX             1103214 594 + 17718866  
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I
e caeRem4.Crem_Contig24  256934 291 +  1162296 I

a score=5129.000000
s ce10.chrX             1103808 243 + 17718866 ATGCATAAATAACGTTTCCCCTTTTCCGTGGTGCc----tctctctctctctctctctTG------TTGTATGCGCAGATCAATAACGTTCGCCCCG----TTGCCCCAAAACCTCTGCGTCTCCCCAACCGTCAATACTGTTTC-----ACTTCAAGAGAC--------TCAGAGGTCGTTTGTATGTGCTGCTATCCTCAACAGCCCTCCCCTCATCTTTTCACAACCACCATCGTTCCTCGTTTTATGTATTTGTATCAAAGCGATC
s caeRem4.Crem_Contig24  257225 256 +  1162296 ATACATACATAatgcgtttttcttttcattccgctcttttctctctctttttctccctcGATTCGTTTGTGTGCGCAGATCAATAACGTTCCTCCTGGCAATTGC-------TCTCTGGGTCTCTCCG---GTCACTACAGTGACTAAAAGTCTCAAGAGacagagagatagagaggTCGTTTGTATATGTG--TATACT-GGCCGCCATCTCtatgtttctctctctccgctTCGTCTCCCTGTTTTATACATTAGCA-CAGAGCCATC
i caeRem4.Crem_Contig24 I 291 I 21
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I

a score=0.000000
s ce10.chrX             1104051 102 + 17718866 GAGATTTTGTGGACTCCGATAATCGGAATATTTATTTGATTATTTATTGATTTAATTGCTCAATTACATCTTTTTAAATATGATTTTTCAAGTGCAAAGGTG
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I
e caeRem4.Crem_Contig24  257481  21 +  1162296 I

a score=2689.000000
s ce10.chrX             1104153 141 + 17718866 TTTTAAAACGCTTTTAGAATTCCAGTTGTTTGACACGTTAAAGTTTAATTTTCAGAGATGGAAGCTGAAACGTCAACTCAGGAAGTTGTGA------AGCAGGTCAAAAATTTGCCAATTTTGATGGTAAGATTTCACTTTGCAAAA
s caeRem4.Crem_Contig24  257502 137 +  1162296 TTTTGCAAcagtttgagatttt------tctgataaGCAGA----TAGTTTGCAGAGATGGAATTCGATATTGGAAGTCTGGCAACAACGACGGGAAAGCCGCCAAAGAATCTACCTATATTAATGGTAAGATTTTGATACACAAAA
i caeRem4.Crem_Contig24 I 21 I 2346
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I

a score=0.000000
s ce10.chrX             1104294 251 + 17718866 GTAAAAGTTGGTGAACAAGTAATTTTTGAAATTCAAAATAAATTAACTTCTGAATGGAAAACATTTCAAAAAACCACGCGGTTTTCCAACCAATTATATCAAATGTTTGATGCTCCATGCTCGTGAAAACATGAAGTTTAAGTTTCCAACAGCTTTTTAAAATTTTGTTCCAGTACACTTCACACTTCAAATCCACTTATCCTATCTCCAAACTCACCTTGATGAATTCTAAGTGGAGCTTGCCCTCTAAA
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeJap4.Scaffold17966    6506 7139 -   140921 I
e cb4.chrX                 9772 591 + 21540570 I
e caeSp111.Scaffold514    64994 625 -   141934 I
e caeRem4.Crem_Contig24  257639 2346 +  1162296 I

a score=1852.000000
s ce10.chrX             1104545 11 + 17718866 AAATTCCATAT
s cb4.chrX                10363 11 + 21540570 AAATCTTATAT
i cb4.chrX              I 591 C 0
s caeJap4.Scaffold17966  129595 11 +   140921 aaatttcaaat
i caeJap4.Scaffold17966 n 7139 C 0
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeSp111.Scaffold514    64994 625 -   141934 I
e caeRem4.Crem_Contig24  257639 2346 +  1162296 I

a score=-1107.000000
s ce10.chrX             1104556 1 + 17718866 -T
s cb4.chrX                10374 1 + 21540570 -T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    65619 1 -   141934 -T
i caeSp111.Scaffold514  I 625 C 0
s caeJap4.Scaffold17966  129606 1 +   140921 g-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      364748 1586 -   783054 I
e caeRem4.Crem_Contig24  257639 2346 +  1162296 I

a score=910.000000
s ce10.chrX             1104557 1 + 17718866 T
s cb4.chrX                10375 1 + 21540570 T
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514    65620 1 -   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      366334 1 -   783054 T
i caePb3.Scfld02_62     I 1586 C 0
s caeJap4.Scaffold17966  129607 1 +   140921 t
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  257639 2346 +  1162296 I

a score=148771.000000
s ce10.chrX             1104558 188 + 17718866 TTCAGGAAGATGCTCCGGTCGGCTCTGACGATCACCAACTTCAATATTCATACACATTTTCGTATTTCATGAGGCCAACTGGCAAATTCGATCCGGAAGATTATGCTAGTTATGTGCAGCCTGTTGGAATAATGAAGTCTGTCGAGCAATTTTGGAGTATTATGGTGCATTTCAAACGGCCAACTGGT
s cb4.chrX                10377 188 + 21540570 TGCAGAGCGAAACGCCAATTAGGTTAAACGACCATCCAATTCAATATTCCTACACGTTCTCCTATTTTGTGAGACCATCTGGGAAGTTTGACCCGGAGGATTATGCAAGCTATGTTCAGCCGGTTGGAGTAATGAAAACAGTTGAACAGTTTTGGGGGATCATGTCACATTTTCGACGCCCAACAGGT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  259985 188 +  1162296 TTCAGGAAGAAACACCGGTTGGTCCAAACGATCACCCCATCCAATACTCCTACACGTTCTCATATTTCGTGAGACCAACTGGAAAGTTTGACCCGGAAGATTATGCAAACTACGTGCAACCGGTTGGAATCATGAAGTCAGTGGAACAATTCTGGAGTATCATGGTGCATTTTAAACGGCCTACAGGT
i caeRem4.Crem_Contig24 I 2346 C 0
s caeSp111.Scaffold514    65621 188 -   141934 TTCAGGAAGAAATTCCACTTGGAGTAAATGATCACCCAATCCAATATTCGtacactttttcattttttgtgcgACCTACAGGGAAGTTCGATCCGGAAGAGTATGCAAACTATGTACAGCCAGTGGGAATAATGAAATCAGTAGAACAATTTTGGAATATAATggttcatttcaaaaaacctactGGT
i caeSp111.Scaffold514  C 0 I 36
s caePb3.Scfld02_62      366335 188 -   783054 TACAGGAAGAAACTCCAATTGGACTGTACGACCACCCCATACAATATTCCTACACATTCTCTGTTTTTATGAGACCTGCTGGCAAATTTGATCCGGAAGACTACGCCAATTATGTTCAGCCTGTGGGAGTCATGAAATCTGTGGAACAGTTTTGGAATATCATGGTTCACTTCGTAAAACCAACGAGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  129608 187 +   140921 -tCAGGAGGAGTCAGAAATTGGAGCATCTGATCATCCGCTTCAATATTCCTATACTTTCTCTTATTTCATCCGTCCCACAGGAAAATTCGACCCAGAAGATTATGCAAACTACGTTCAACCAGTAGGAATAATGAAATCGGTTGAACAATTCTGGAAGATCATGATACATTTCAAGCGACCTACAGGT
i caeJap4.Scaffold17966 C 0 C 0

a score=-6094.000000
s ce10.chrX             1104746 24 + 17718866 AAGGGTTTTGATAGTGGAAAGTAT
s cb4.chrX                10565 14 + 21540570 -AAAtct----tattgaaa-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260173 23 +  1162296 -AAAGATTCGGtcttgaaatttat
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      366523 11 -   783054 --------ATGTTTCGCAA-----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  129795 24 +   140921 AAGCATTTTTAAAGTCAGACGTGt
i caeJap4.Scaffold17966 C 0 I 4
e caeSp111.Scaffold514    65809 36 -   141934 I

a score=-1251.000000
s ce10.chrX             1104770 14 + 17718866 TTAAAAATAAATCA------------
s cb4.chrX                10579  6 + 21540570 --------atttca------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260196 14 +  1162296 tttcaattatttca------------
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62      366534 24 -   783054 TTTCAA--ATATCAggcaaaaaatca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  129819  4 +   140921 I
e caeSp111.Scaffold514    65809 36 -   141934 I

a score=-2203.000000
s ce10.chrX             1104784 12 + 17718866 AAAACTATGCtt----
s cb4.chrX                10585 12 + 21540570 ---gctctcatcatt-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      366558  9 -   783054 -------tgaatacTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  129819  4 +   140921 I
e caeSp111.Scaffold514    65809 36 -   141934 I
e caeRem4.Crem_Contig24  260210  1 +  1162296 I

a score=-6155.000000
s ce10.chrX             1104796 412 + 17718866 taaaaattaaatttgaaaatataaaaaaaaCTCCAGTAACCTTATAAGAGTTCAGGGGTATTATAAATAGTGAAACTTAAAAGTACCTAAAGAATAATTTGACCTAGTAGTGCAAGACTGATAAAGTGTTTGAAACGTAGTTGAACACTTTCAACTGTTCCTTTTTAAGTTTTTCACAAATCTTTATGAATATCGAGTTTTTAAACTTTTTTTTAAGCGACGAATAAATTTTTTGATACTGCTTGAATGGTTTCAAAATCTGAAGTTAAAAAAAAATCTGAAGCTAAGCTAAATTAAAAAAAAAATTGCCTAAAGTATATTATTAACCAATGTCTAGATTTGCTGATAATTGACACAGAATTTCCAGAAATTTTTTATTTTCAAAAAGATTTCCCTTCCATTCCATTCCATA
s cb4.chrX                10597 153 + 21540570 ttgaaatgaaattttacaatttgGCAA-------------TTGATAAAAG----------------------------AAAA----------------TTGCCGTAGATTTGCTGGATTGATAG---GATTGAGAGATA--TGAG--------AGTGATGCTCATTGAGTGTATTACCAG-------GAACATC--------------------------CGAAAATATTC------------------------------------------------------------------AACAAATATGGCTTAA----TATTATAAA--------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      366567   0 -   783054 C
e caeJap4.Scaffold17966  129819   4 +   140921 I
e caeSp111.Scaffold514    65809  36 -   141934 I
e caeRem4.Crem_Contig24  260210   1 +  1162296 I

a score=666.000000
s ce10.chrX             1105208 10 + 17718866 ACTTTTACTT
s caeJap4.Scaffold17966  129823 10 +   140921 atttttattt
i caeJap4.Scaffold17966 I 4 C 0
e caePb3.Scfld02_62      366567  0 -   783054 C
e cb4.chrX                10750  0 + 21540570 C
e caeSp111.Scaffold514    65809 36 -   141934 I
e caeRem4.Crem_Contig24  260210  1 +  1162296 I

a score=0.000000
s ce10.chrX             1105218 1 + 17718866 A
e caePb3.Scfld02_62      366567 0 -   783054 C
e caeJap4.Scaffold17966  129833 0 +   140921 C
e cb4.chrX                10750 0 + 21540570 C
e caeSp111.Scaffold514    65809 36 -   141934 I
e caeRem4.Crem_Contig24  260210 1 +  1162296 I

a score=-500.000000
s ce10.chrX             1105219 4 + 17718866 ATTC
s cb4.chrX                10750 4 + 21540570 ATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260211 4 +  1162296 attt
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    65845 4 -   141934 ATTG
i caeSp111.Scaffold514  I 36 C 0
s caeJap4.Scaffold17966  129833 2 +   140921 -tt-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      366567 0 -   783054 C

a score=226067.000000
s ce10.chrX             1105223 246 + 17718866 CAGAAATGTGCGACAAAGCTGACATTCACTTCTTCAAAACTGGCGTCAAACCAGTGTGGGAAGATCCGGCGAACTGCAAAGGTGGAAAATGGATTATCCGACTGAAGAAAGGATTGTCGACAAGAATTTGGGAGAATCTGCTCATGGCAATCATTGGAGAGCAGTTTTTGGTTGGAGATGAGCTCTGTGGAGCTGTGTGCTCAATTCGCAATCAGGAAGATATTATATCATTATGGAATAGGTTAG
s cb4.chrX                10754 239 + 21540570 CAGATCTGTGTGACAAAGCGGATATACACTTCTTCAAAACTGGAATCAAGCCTGTCTGGGAAGATCCAGCAAACTGCAAAGGTGGAAAATGGATTATTCGTCTGAAGAAAGGATTATCCTCTCGTATTTGGGAGAATCTACTACTGGCTGTTGTTGgagaacaatttgaaattggagATGAACTGTGTGGAGCGGTGTGTTCAATTCGCAATCAAGAAGATATCATTTCATTATGGAAT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260215 246 +  1162296 cagatttgtgtGATAAAGCGGACATCCACTTCTTTAAGACGGGCATCAAACCAGTATGGGAAGATCCGGCCAATTGTAAAGGAGGAAAATGGATCATCCGTTTGAAGAAAGGATTGTCTGCAAGGATTTGGGAGAATCTGCTCATGGCGATAGTCGGGGAGCAATTTTTGATAGGGGATGAGCTGTGTGGAGCGGTGTGTTCGATTCGTAACCAAGAGGATATCATTTCGTTATGGAATCGGTGAG
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold514    65849 246 -   141934 CAGATATGTGCGACAAAGCTGACatacactttttcaaaactggTATTAAACCTGTTTGGGAGGACCCAGCCAATTGCAAAGGTGGAAAATGGATTATTCGCTTGAAAAAAGGTCTATCAACCAGGATTTGGGAGAATTTATTAATGGCGATAATCGGAGAACAGTTTTTGGTTGGAGATGAGTTGTGTGGTGCTGTTTGttcaatcagaaatcaaGAGGATATTATATCTTTATGGAATAGGTCGG
i caeSp111.Scaffold514  C 0 I 67
s caePb3.Scfld02_62      366567 246 -   783054 CAGATATGTGCGACAAAGCCGACatccatttcttcaaaacggGAATCAAACCAGTTTGGGAGGATCCGGCCAACTGCAAGGGTGGAAAATGGATCATTCGACTAAAGAAGGGTCTATCTTCTAGAATTTGGGAGAATTTGTTGATGGCGGTGATTGGAGAGCAATTTTTGGTGGGAGATGAATTATGTGGTGCTGTCTGTTCTATAAGGAATCAGGAGGATATTATTTCTTTGTGGAATCGGTATG
i caePb3.Scfld02_62     C 0 I 14
s caeJap4.Scaffold17966  129835 246 +   140921 tagacaTGTGCGACAAAGCTGACattcactttttcaaaactggAATAAAACCCGTTTGGGAAGACCCAGCAAATTGCAAAGGGGGTAAATGGATcattcgtttgaaaaaaggcctGTCAACTAGAATTTGGGAAAACCTTCTGATGGCTTTGATtggcgaacaatttttgattggTGATGAATTGTGTGGAGCTGTTTGCTCTATTAGAAATCAAGAAGACATCATTTCTCTGTGGAATAGGTtgg
i caeJap4.Scaffold17966 C 0 I 5

a score=-230.000000
s ce10.chrX             1105469 25 + 17718866 TGCTGGA----ATTTAAAAATTAAAACTT
s caeRem4.Crem_Contig24  260478 27 +  1162296 TGTTGAGAA--ATTGGAATAGCTAGAATg
i caeRem4.Crem_Contig24 I 17 C 0
s caePb3.Scfld02_62      366827 29 -   783054 TATTGAGCACGATAGAAATAGGGAAATCG
i caePb3.Scfld02_62     I 14 C 0
s caeJap4.Scaffold17966  130086 25 +   140921 tttttaa----atttaaatttttcaattt
i caeJap4.Scaffold17966 I 5 I 7
e cb4.chrX                10993  0 + 21540570 C
e caeSp111.Scaffold514    66095 67 -   141934 I

a score=-38106.000000
s ce10.chrX             1105494 202 + 17718866 GGAGTATTTGG-------------------------------GAACTG------GAAAACGTGAAAAAAACAACAATGCCAA-ATTGTGCAAGAC--CGACA-------AAAAACAA-------------------------CTGAAAACATTTCACACCATAAATCTT---------AAAAAG--------TCTTAGTGGAATTTGAAAATGTCAAAAAAATCTACTAGT-----------------------GCTTCTGCCAGA--TGTGAAAATAGTGTAATTGCAAATTTTG---------------TTAGCATATCTTTT--GAATGA
s cb4.chrX                10993 104 + 21540570 ---------------------------------------------------------------------AGGTATGTTTCCA-AATGTTtgga----------------aaaaacta-------------------------------------------------------------aaagtg-------tttcttttgaatttt----tttttgttcgaataTGGACTT-----------------------CTTACTCATAAACCTTTAAGAAGAG------------------------------------------------GCGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260505 271 +  1162296 -------------taatg------------------------aaattg------aaacattagGAGAAGAAGTATGTCCCCATGCTATTCAGATT--CAATATCAATGCAAAAACTACGTTTCATCATTCTTCGTCAGCGCTCTAAGAATAGGGTAACCCTGTACTCCATTCATCTTCAAAGTG------------TCTGAATTGTACCCATTTAGCATAAATATATACTTGTGGCCGGGACGCGCCTTGTCAGCTAAATAATAGCCTGATACAAAGAACCGGA-----TAATTGGCGCCTAAATTCcaaatttgttgatttttttcgcgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      366856 248 -   783054 CGTCTGTTTGTGTTAATGTGTGGTTGGTAGTAGCATCTGTGAGAATTTTTAGTCAAACCGCTGGATAGAGAATTTGTTTGAA-ACGATGCTGAATGCTAAGATAGGTTGAGAAATAA----------------------------AGAAGATGCCGGACCAG----------------AGGATGCCGGCAACTCGTTTTGCATTTT------TAGAAAGAAATAAgcaatt----------------------ggaaatgaaaagagcagTGAAAAAGGTTGAAGACGCTATCTGGCTCTT----------TTAGCcgacttttt--gaatta
i caePb3.Scfld02_62     C 0 I 149
e caeJap4.Scaffold17966  130111   7 +   140921 I
e caeSp111.Scaffold514    66095  67 -   141934 I

a score=-4091.000000
s ce10.chrX             1105696 40 + 17718866 ACGC----------------GCCTGTTGCTTCAAGAGGTCACCAAATCTTGTTAGA
s cb4.chrX                11097  4 + 21540570 AGGT----------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260776 56 +  1162296 aagtaaaattttcgactatgattcagaagtggaagaaattattgaaaatcatttga
i caeRem4.Crem_Contig24 C 0 I 106
e caePb3.Scfld02_62      367104 149 -   783054 I
e caeJap4.Scaffold17966  130111  7 +   140921 I
e caeSp111.Scaffold514    66095 67 -   141934 I

a score=296.000000
s ce10.chrX             1105736 97 + 17718866 GCTCCACTTTGTCAGATCAAATTTTGCGTAATTTTACACTTATTATTTTCTGCAATTTTACTTGGAAAGTAGAACAGTTGTGGAAAATTGAATCAAC
s cb4.chrX                11101 67 + 21540570 ------TTCTGTCTGAGCTGTTTCTG----ATTTTACAAT---------------ATTCACTAACAAATCAGTACC----TGGAAAATCAAA-CAAC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      367104 149 -   783054 I
e caeJap4.Scaffold17966  130111  7 +   140921 I
e caeSp111.Scaffold514    66095 67 -   141934 I
e caeRem4.Crem_Contig24  260832 106 +  1162296 I

a score=-1120.000000
s ce10.chrX             1105833 37 + 17718866 AAATTTGCCATACACCCTGATGACATTCCCAACTACA
s cb4.chrX                11168 10 + 21540570 ---------A-----------AATATTCAC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260938 26 +  1162296 aaatttgaca-----------agtatgcacaAATCCA
i caeRem4.Crem_Contig24 I 106 C 0
e caePb3.Scfld02_62      367104 149 -   783054 I
e caeJap4.Scaffold17966  130111  7 +   140921 I
e caeSp111.Scaffold514    66095 67 -   141934 I

a score=-3933.000000
s ce10.chrX             1105870  6 + 17718866 TCAATT-----------
s cb4.chrX                11178  2 + 21540570 -------------CC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260964 15 +  1162296 TCGAAGCATATTTCA--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      367253  6 -   783054 -----------TCCATT
i caePb3.Scfld02_62     I 149 C 0
e caeJap4.Scaffold17966  130111  7 +   140921 I
e caeSp111.Scaffold514    66095 67 -   141934 I

a score=133933.000000
s ce10.chrX             1105876 163 + 17718866 TTCCAGAAACGCAGACGACACCCCAGTAACCAACAGAATCCGAGAAACTCTTCGATCGGTGCTCCAACTGCCTCAGAACACGGTACTAGAATACAAACGACACGATGACTGTCTCAGAGATCAGAGCTCATATCGTCATACTACTAAAAATATCTGCAAATGA
s cb4.chrX                11180 163 + 21540570 TTTCAGAAACGCTGACGAGACTCCTGTGACAAACCGAATCCGTGATACTCTCCGCAAAGTTTTGAACCTTCCGCAAAATACTGTTCTTGAGTACAAACGTCACGATGACTGCCTGAGAGACCAAAGCTCCTATCGACACACTAAcaaaaacattctgaaataa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  260979 163 +  1162296 TTCCAGAAACGCCGACGAGACCCCAGTAACCAACCGAATCCGCGACACCCTCCGAAGTGTTCTGGAACTCCCTCAAAACACGGTTCTCGAGTACAAACGACATGATGACTGCCTCAGGGATCAGAGTTCATATCGCCACACCACCAAAAACATTTGCAAATGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    66162 163 -   141934 tttcaggaaTGCTGACGATACTCCAATAACTAACCGTATTCGTGAAACACTTCGAAGTGTTCTTGAACTGCCACAAAACACAGTTCTTGAGTATAAACGTCACGATGATTGCCTCCGGGATCAGAGTTCATACCGTCACactacaaaaaacatttgcaAGTAA
i caeSp111.Scaffold514  I 67 I 782
s caePb3.Scfld02_62      367259 163 -   783054 TTACAGCAACGCCGACGATACTCCAATCACCAATCGAATTCGTGAAACACTTCGATCTGTTTTGCAATTACCCCAGAACACTGTCTTAGAATACAAGCGTCATGACGATTGTCTTCGAGACCAGAGTTCCTACCGTCACACTACAAAGAATATTTGCAAATAA
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966  130118 163 +   140921 tTCCAGAAACGCGGATTACACTCCCGAGACTAATCGTATTCGCGAAACACTGAGGAAAGTATTGAATCTGCCACAAAATACGGTTTTAGAGTACAAACGTCATGATGATTGTCTGAGAGATCAGAGCTCGTACAGGCACGccacaaaaaatatttgtaaataa
i caeJap4.Scaffold17966 I 7 I 1502

a score=-3614.000000
s ce10.chrX             1106039 24 + 17718866 ----------TCATGCTGCTTTACTATTATTTTT---------
s cb4.chrX                11343 43 + 21540570 ttaaaatgtttataacTATTTGATTGCTTTTATTCGTAATTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  261142 14 +  1162296 ---------------------------TTTTATTCATAATT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      367423 24 -   783054 ----------TCGGAGTTTCTTAATATTCTTTTT---------
i caePb3.Scfld02_62     I 1 I 386
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    66325 782 -   141934 I

a score=-1564.000000
s ce10.chrX             1106063 83 + 17718866 TTCGATTGGGAATCATTTTGG--GTCCGGAGAAAAAGAAAATGAGAGGAATCTCGTTATTG---GTTTTAATATATTCTGTATAATGA
s cb4.chrX                11386 68 + 21540570 TC--ATTGGTTctctaattca----------aaaaagc---cTGGATGCATCTCAAAATAGcagcttttcat-----ttttttaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  261156 76 +  1162296 -----TTGGTACCCGTATTGATATTTGgtggaaaaatc-------aaacattttaattGGGAAAGTTTTAATATATGTTGTTTAATAA
i caeRem4.Crem_Contig24 C 0 I 309
e caePb3.Scfld02_62      367447 386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    66325 782 -   141934 I

a score=1051.000000
s ce10.chrX             1106146 31 + 17718866 CTAGTTTTATGATT--TCAAGTTTTTTTTTGAA
s cb4.chrX                11454 33 + 21540570 ttaattttatgcTTAATGGAGTTATTTACTGAA
i cb4.chrX              C 0 I 979
e caePb3.Scfld02_62      367447 386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    66325 782 -   141934 I
e caeRem4.Crem_Contig24  261232 309 +  1162296 I

a score=0.000000
s ce10.chrX             1106177 1653 + 17718866  
e caePb3.Scfld02_62      367447  386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e cb4.chrX                11487  979 + 21540570 I
e caeSp111.Scaffold514    66325  782 -   141934 I
e caeRem4.Crem_Contig24  261232  309 +  1162296 I

a score=1690.000000
s ce10.chrX             1107830 76 + 17718866 ATTTCTTTGTAAATCTATTCCACCTCGATAATCCATCTTTGTAACCTCTCTCAATCCTCATTTAGACGTCAAGGAT
s caeRem4.Crem_Contig24  261541 66 +  1162296 acttttttg-aaatccatTCCGCCTCACCGATCCATCTTAGT---TCCCCTCACCGGGCACTTAGACA------AC
i caeRem4.Crem_Contig24 I 309 C 0
e caePb3.Scfld02_62      367447 386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e cb4.chrX                11487 979 + 21540570 I
e caeSp111.Scaffold514    66325 782 -   141934 I

a score=-628.000000
s ce10.chrX             1107906 4 + 17718866 ACCC-
s caeRem4.Crem_Contig24  261607 4 +  1162296 -CCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    67107 4 -   141934 -ACTA
i caeSp111.Scaffold514  I 782 C 0
e caePb3.Scfld02_62      367447 386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e cb4.chrX                11487 979 + 21540570 I

a score=2292.000000
s ce10.chrX             1107910 4 + 17718866 CCTA
s cb4.chrX                12466 4 + 21540570 CCTA
i cb4.chrX              I 979 C 0
s caeRem4.Crem_Contig24  261611 4 +  1162296 CCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    67111 4 -   141934 CCTA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      367447 386 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I

a score=62941.000000
s ce10.chrX             1107914 361 + 17718866 CCATTAGCCGCCCTCCGAGGAAAGGAACAAGTATAATTGTACAAGCCTAATGTCACCCCATTTGATGGACATGTGTGT-ACTTGTTCCATTAGCCACCTACCTTT------TTTCATACTTTTCCATTTCAACTATTCAATCTATGTAGACTACCT----------ATGGATAAATTTCATTCTCTGCTAGTAGCAATATTTCTGTTGAGAGCTTTGGAAGGTAAATA------ATATGAAAGTTATTC--AAAATCAATTAATCCGTT-----CAGAAACGTATTCAACGTATCATGGAAATATCTATGGAATCCAGAAGTTGAAGGGCAACAAAACTGGAAAGTCGGTTTATCAACATTTTTGGTTTAAAAGGCATCATGTGCATTTGT
s cb4.chrX                12470 324 + 21540570 CCATTAGCA------------AAAGAACAAGTTT-ATTTTACATAGTGAATGTCACC---TTTGATGGAAAAGAAGG--GTCTGT-CCATTAGTGTCATGTTCAG--------TCG---TCCgccattttga-------------------aacttca-------aatgaacGAAATTCACCTTTTATTGTTTGCAGTGTTTTTATTTGAATCATTTAAAAGTGAGTTTGTCGTTAATCGATTTGAct---gtttgaaattgattt--------cagTTCCATATTCTGTTCGTCTAGAAAATATATATGGGATAAAACAACTGAAAAGTAATAAGTCTTCGCATTCGGACAgtcatcttttttcaaataagaaacgtcatatttttttgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  261615 328 +  1162296 CCATTAGGC------------GAGGAACAAGTTTAATTGTACAAGCTGAATGTCACC---TTTGATGGACATGCAGGT-GCTTGTCCCATTAGTGACCAATCCTT--------tcat--ttcgatattttca-----------------acaaCTT----------ATGGAtaaatttcattctcttttgtTGACTTTTTTCCTACTGAAAACGTTGGAGAGTGAGTTTGAAGTAGGAAAACTTTAATTTCGTTGTAAATC--TTT--------CAGATTCCTACTCCACCTATCATGGGAACATATACGGTATTAAACGACTTGTTAGTAATAAAACTACACACCCGGTTCATCAACATTTCTGGTTCAAACGACATCATGTACATTTGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    67115 337 -   141934 CTATTAGCC----------CAAAGGAACATGTTTAATTGTTCAGGC-AAATGTCACC---TCTGATGGACATGCGCGTACTCGTTTCCATTAGCAAGCAATTTAG----------------ttctatttcaa--attca-tctACGTCGACGACT----------AATGGACAAgctttgttttttaattttcacctttttcttattGAGAGAATTGGAAAGTATG---------AATGCACGTTGTTA--ACAATCAACTGAATTATGTGATACAGATTCATATTCAACATACCATGGAAACATTTATGGTATCAAAAGGTTACACGGCAACAAATCgaatcatcttcttcatcaacaCTTTTGGTTCAGAAGGAATATTGCTGTTTTGT
i caeSp111.Scaffold514  C 0 I 927
s caePb3.Scfld02_62      367833 367 -   783054 CCATTAGCC-CCCTGTCTTCCAAGGAACAAGTCTaattgaacacgctgaatgtCACC---TTTGATGGACATGCGCCTTGCTTGTTCCATTAGTGTTCGACTTCGCTTCGTTcaca---tcttccattttca--attcg----atGCTGACAACTTATAAAGTAAGATGGATACATTTCATTCTCtgcttttcatcattttcttgttcaaagttttagaaagtgggtttta---taatatttttgattt--ggaaaaaatagttttct------caGATTCATATTCTTCGTATCACGGGAACATTTATGGAATCAAAAGGTtgattggaaacaaaaagagtcaTCCTATACATCAacatttttggttcaaaagaCATCATGTTCACTTGT
i caePb3.Scfld02_62     I 386 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I

a score=1326.000000
s ce10.chrX             1108275 3 + 17718866 GAG
s cb4.chrX                12794 3 + 21540570 aag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  261943 3 +  1162296 AAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      368200 3 -   783054 AAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-1491.000000
s ce10.chrX             1108278  1 + 17718866 T------------
s cb4.chrX                12797 13 + 21540570 caattgaaaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  261946  1 +  1162296 T------------
i caeRem4.Crem_Contig24 C 0 I 34
e caePb3.Scfld02_62      368203  0 -   783054 C
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-561.000000
s ce10.chrX             1108279 110 + 17718866 TCACGTATTAATTTTAATTTTTACATTTAAAGTTAGGTGCTTTGACTGTAAGATACAAGTTGTCAGAA----------TTTGAAAAATGTGGTGTGAATAGAAGTTGTCACGTGGCATTG
s cb4.chrX                12810  86 + 21540570 tcacgtaattatttttctttt------------------------ccagaagGCACAGATTTCCTAAAACTCTCACTTTTT------TGCAGTCTTCACAAAATTTGTGTTCTA----TG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      368203   0 -   783054 C
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  261947  34 +  1162296 I

a score=-9631.000000
s ce10.chrX             1108389 158 + 17718866 GCAGCTGACATTTTAGATTATTAAAAGAAACTTAAAAATAGAAATAAAACATTATTGTCATTAATTTTGAAAAAAAATGTGAACAAACCCTTTAATTTTTATCTCAACAAGTAATCAATTTCTTTGCCTAAACTGCATTTTTGTGTGAAAATATTATG
s cb4.chrX                12896 107 + 21540570 GCAGAGGTCAGTT------------GTGAATGTAAAA--GGAACATGAATCTcttagtttttaaaattg--------tatGCATGAACAGTTAACTAATT------GCAAGTTACC---------------ACAACATTTT--------GATGTCATG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      368203  41 -   783054 ---GCGACTA-----------------AGATTTA------Gaataacaaacttttttttttcaaatt-------------------------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  261947  34 +  1162296 I

a score=1843.000000
s ce10.chrX             1108547 10 + 17718866 TTGCAGAAGA
s cb4.chrX                13003 10 + 21540570 ATCCAAGTGA
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig24  261981 10 +  1162296 tttcagaaga
i caeRem4.Crem_Contig24 I 34 C 0
s caePb3.Scfld02_62      368244  7 -   783054 ---cagacgA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=5178.000000
s ce10.chrX             1108557 47 + 17718866 CAACGGTACCCAAAAACGCTAATGTTTGCAAGGATGTCGATGAGCCA
s caeRem4.Crem_Contig24  261991 47 +  1162296 caaaGATATCCAAAAACGTTGGTATTTGCAAAAGCGTCAGTACATGC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      368251 47 -   783054 CAGAAGTATCCGAGAACGTTGACGTTTGCAAGgataacaaaaactga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e cb4.chrX                13013 48 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-529.000000
s ce10.chrX             1108604 32 + 17718866 ATGCTCCAAGAAAA----AAGtaatatttataaaaa
s cb4.chrX                13061 32 + 21540570 ATTTTTCGTGAAAATCAgagtttttttgtaga----
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig24  262038 32 +  1162296 GTGTTCCCAGAAAC----AGGTGGGTTGCAGAAAAA
i caeRem4.Crem_Contig24 C 0 I 1589
s caePb3.Scfld02_62      368298 31 -   783054 atgttttcaatcga----aggtaactt-tggaaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-1006.000000
s ce10.chrX             1108636 9 + 17718866 aaattaatC
s cb4.chrX                13093 2 + 21540570 -aa------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      368329 9 -   783054 tattttgtc
i caePb3.Scfld02_62     C 0 I 24
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  262070 1589 +  1162296 I

a score=-563.000000
s ce10.chrX             1108645 41 + 17718866 ATGACAGGTACAGACAGTCAGAAAACGCAAGTCCAGAT---AGG
s cb4.chrX                13095 22 + 21540570 -----------------tcaaaaagt-----tcccGATGTCAGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      368338 24 -   783054 I
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  262070 1589 +  1162296 I

a score=-4110.000000
s ce10.chrX             1108686 83 + 17718866 --TT------TTTTTTGAAATTTGTTTCAAGATTTGAACTATAAACTTTCAAAT-----TTATATGTTCCCCCAATCTTAAACAACTTTCAACAGA
s cb4.chrX                13117 85 + 21540570 TTTCGCCATGGTTTTCAAAAGGTTTCCCTGGtgatgaaataaaattttactaaAATTTATTGTGTG-----------TTAACTGATATCACAGAGa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      368362 41 -   783054 -ttc------tttttc-----ttttttccggtt--------------------------ttgTATG-----------------GATATTACGTGCC
i caePb3.Scfld02_62     I 24 C 0
e caeJap4.Scaffold17966  130281 1502 +   140921 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  262070 1589 +  1162296 I

a score=-977.000000
s ce10.chrX             1108769 22 + 17718866 TTAATTTAAAAAAAAACCCCCC
s cb4.chrX                13202 20 + 21540570 cttattttccaaaaaactat--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      368403 12 -   783054 ataatttgtcaa----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  131783 12 +   140921 ttaattcaagaa----------
i caeJap4.Scaffold17966 I 1502 C 0
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  262070 1589 +  1162296 I

a score=39846.000000
s ce10.chrX             1108791 94 + 17718866 TTTTCAGAACATCAAAATCATACAAGTAAAACGAATTGGTGGTGATTACCCATATGGTCCAAAACTGTCATCAATCTCTGAAAACCAGATATGC
s cb4.chrX                13222 94 + 21540570 ttttcagaacattagAACTATAACAGTAAAAAGAATTGGAGGAAACTATCCATATGGTCCAAAACATGCTTCAGTCTCGAAGAATGAGAtatgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  263659 94 +  1162296 tttgcagaatttcaaAACGATCAGAGTGAAAAGAATCGGGGGAAACTATCCATACGGTCCAAAACTATCTTCAATCTCCGAGAACAAGATATGT
i caeRem4.Crem_Contig24 I 1589 C 0
s caePb3.Scfld02_62      368415 94 -   783054 ttttcagtcccACAAAACGATCAAAGTGAAAAGAATCGGAGGGAACTATCCATACGGTCCAAAACAAGCTTCGACGTCTGAAACCAAAATATGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  131795 85 +   140921 ttttcag---------acaattcAAATCAAAAGAATTGGTGGTGGATATCCATATGGACCAAAATTTCACGCATTGTTCCAAAGTAAAGTATGC
i caeJap4.Scaffold17966 C 0 T 16523
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=21832.000000
s ce10.chrX             1108885 241 + 17718866 CGCCCCACAACAAGCCGCTCCTCCTCACCTCATTTTTCTTCCATCGCTTTTTCAACTTCCCGACAACTCAACTTTCCCAAGGTCCG-TTTGTTGGTGTGTTGCATTTCTTTTTATCAATCGAGGGCTTTCCGTGCACTATATGTTGTAATACTTTGT----TGAAGACCCC----------CTGTGTAC--------GTTGGGTACACCAGTTGGGGAATGAGATAGACAGTGATTGATTA-CTT--GATGCTTTGTGGTTTGTCGG
s cb4.chrX                13316 231 + 21540570 tttattttcaataattattCTCATTCG---AGGTCATCCATGCTCTCTTCTACATTACTCCGG------AATATTTTAAAGGTCAG-------TGTTTG-CGAGATGGTTTTTATGAACAAAAGTT------GGCAAGGTAGAGTGTAATACTGCAAGAAATGAGGAACCCCCGCAGATTCTTGTGTACACACAGCAGAAGAGAAAAGTTATA------------TGACATTGATTGATTATCTG-AAATGCTTTGTGGTTAGCCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  263753 219 +  1162296 CATCTTCTCAACACCAACTCCCACTCA---CATCcatcttccatttctttctcAACTTCCCGA---CTCAATATTCCCAAGGTC---------TGTTTGttgcttttctttttatcaatTGGTTTC------GGTTGTGAGTAGTGTAATACTCTCCG---TGAGGACCCCACACG---TCTCGTGTAC--------GTAGGGTACACTTCCAG-----------TGAGAGTGATTGATTA-CTG-GGATGTTTTGTGGTTAGCCGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      368509 223 -   783054 CATCGAACCAACAACAACTCCCACTCA---AAACAgccttcaatttctttttcaacttcccGA---CTCCACTTTCCCAAGGTCCGATGTGTTTGTCTgttgcttttctttttatcaattGGTTTT----------------AGTGTAATACTCTTTC---TAGTGGACCACCACG-----TCGTGTAC--------GTAGGGTACACCAAGTGA-----AAGATAGACAGTGATTGATTA-CTGCAAATGTTTTGTGGTTTGTCGG
i caePb3.Scfld02_62     C 0 I 176
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-430.000000
s ce10.chrX             1109126 12 + 17718866 GCGGGGATTGAG--
s cb4.chrX                13547 12 + 21540570 GCGAAGGATTAG--
i cb4.chrX              C 0 I 135
s caeRem4.Crem_Contig24  263972 12 +  1162296 GCGGCGG--TAGTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      368732 176 -   783054 I
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=189.000000
s ce10.chrX             1109138 6 + 17718866 TCAGTA
s caeRem4.Crem_Contig24  263984 6 +  1162296 TTGGCA
i caeRem4.Crem_Contig24 C 0 I 119
e caePb3.Scfld02_62      368732 176 -   783054 I
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13559 135 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=0.000000
s ce10.chrX             1109144 794 + 17718866  
e caePb3.Scfld02_62      368732 176 -   783054 I
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13559 135 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  263990 119 +  1162296 I

a score=333.000000
s ce10.chrX             1109938 13 + 17718866 ACTCTAAAATACT
s caeRem4.Crem_Contig24  264109 13 +  1162296 ACGCTGTGATTCT
i caeRem4.Crem_Contig24 I 119 C 0
e caePb3.Scfld02_62      368732 176 -   783054 I
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13559 135 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-254.000000
s ce10.chrX             1109951 40 + 17718866 TTTCAGAAATCT---------TCGAAATCTCTGAACCAAGTTCATATCA
s caeRem4.Crem_Contig24  264122 49 +  1162296 TTGCAGAGGCCTGTTGCCTACTCCCAGCCGTTGAAGAAGGTTCAAATTA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      368908 38 -   783054 TTGCAGACACCGATT------TCGAAACTACCTAGCATGCGTCA-----
i caePb3.Scfld02_62     I 176 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13559 135 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=28667.000000
s ce10.chrX             1109991 116 + 17718866 ACCTGGCAAAGCGAAAACA-----GTGGAAACGAAACAAGGCGTGGTGTACTCATTGTGAGTCATACTGGAAGATGAAGATTAATTCGAAACAGTTGAAGTCTAGATACCCGTGCTGTTGa
s cb4.chrX                13694 114 + 21540570 --ACCTCGAAAAATGGCAA-----TTGGAAATATAACAAAGCATGGTGTGCCCACTGTGAATCTTACTGGACAATGAGAATCAAGTCGATGGAGTTGAAATCAAGACGTGGCTGTTGCTGA
i cb4.chrX              I 135 I 423
s caeRem4.Crem_Contig24  264171 110 +  1162296 ------CGAAACGAAATCT-----GTGGAGACAAAACAAAGCGTGGTGTGCTCATTGTGAGTCATATTGGAAGATGAAGATCACATCGAAAGAATTGAAATCTAGGCATGGTTGTTGTTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      368946 117 -   783054 ---AGCTGAAAAACAACGAAGATCGTGGAAAAGGAATAAATCATGGTGTACTCATTGTGAGTCATACTGGAAGATGAAGATTGATTTGAAGGAATTGAAATCTAGGCATGGATGTTGTTA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-2935.000000
s ce10.chrX             1110107 104 + 17718866 -----a-----ttatttt-gaaatatttttttattttaaataaatGCCTATTTTCCGCGTGAAATTATAA-------TTTTTACTGCAAAACGACAACCTGTGCTCATTTCTTGGATTTATA---
s caeRem4.Crem_Contig24  264281 111 +  1162296 ATaaaatgttcttctttttgaaaagtgtgttagtttcgtttttcag-----attttgggaACAATTATGTGAATGACTTATT------AAATGAAAACCTGAGATCATATATAGTATAAATA---
i caeRem4.Crem_Contig24 C 0 I 144
s caePb3.Scfld02_62      369063  93 -   783054 ATTAGA-----TTCTTGT------GTGTTTTCGATTTGTGTAATAGTagccattttttgagaaatt-----------ttttt------gaatgaatattt----ttatgttgTCCATAAATGTAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-1453.000000
s ce10.chrX             1110211 138 + 17718866 CTGAAAATTTGAGTTTCAGGTTGTGCTTGAACTTTGTAGATTTTATCAACATTTAAACATCCAAACTTCTGGAAAGCCCAGTTGGTCAGTTTTATTGGCGTTTTAATTACTGTAAATTGATACTTGATAGATGCGCAG
s caePb3.Scfld02_62      369156  70 -   783054 Ctggaagtttgatt--------------------------tttcgtc--CATTCCAGTCTCACAATTTGGTGAAGATC-------------gcattctcgtttttttt---------------------------cgg
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I
e caeRem4.Crem_Contig24  264392 144 +  1162296 I

a score=-6493.000000
s ce10.chrX             1110349  87 + 17718866 ------ACA--ATTCAACTATAAAAATATTTCG-AAGACATTT----CTCACAAGTTTC---TTACAAGTAC----------------ACCAATTTGTAAATGTAGTTGTCTTCAGGAA
s caeRem4.Crem_Contig24  264536 115 +  1162296 acaatgACAACTACCAAATc---caaagttaca-gtgacaattACAACTACCAAATccaaagttacagtgacaattACAACTACCAAATCCAACAAGCACGCATGCTGATTTCCATACG
i caeRem4.Crem_Contig24 I 144 C 0
s caePb3.Scfld02_62      369226  58 -   783054 ------aca--ttcCAGATCT-ATAAGGTTTCACATGACATTG-----TTTCGGGTCCCTTGTCACTGGGAA-----------------------------------------------
i caePb3.Scfld02_62     C 0 I 26
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-275.000000
s ce10.chrX             1110436 42 + 17718866 A------CCCCATCAAATCCAGGAT---------------ACACATATAATTTGCTCTCCGAG
s caeRem4.Crem_Contig24  264651 63 +  1162296 ATTGGGTCCCTTTCAAACCCACAACCTCTGGTTCtctccaatttcaaaaaactgctCTGCGAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      369284 26 -   783054 I
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-3038.000000
s ce10.chrX             1110478 91 + 17718866 CACTGACCTTTTCTCCCGATAACTATACAACTTGCTCCTCCCCCTTGCAAACTCTCAGAAGTTGCCCGCCGCGGTGCAAAAAAAACAACAA------
s caeRem4.Crem_Contig24  264714 66 +  1162296 CATTGGCATTTTAC---GACTGCTATACAACTATAACCCTTTCC----ACATTC-----------CTTCCG-------------AAAATAATTTCGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      369310 55 -   783054 cactttttttttct-----------tccgattcgTCCTCTTTCTTTAGACATTCG----------ACGCCG-------------ACAAC--------
i caePb3.Scfld02_62     I 26 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I
e caeSp111.Scaffold514    67452 927 -   141934 I

a score=-8188.000000
s ce10.chrX             1110569 259 + 17718866 CAACCTTCGATATAATATCAATTCTCTCC-------------------------------------------------TCTTCTCGCACATTTTATAATCCGCCGAAACTCGGAAACACACAGTTTTTATGAG-------------------------------TAGTGG--------------GGGGATTTGGGA-CTT-----TAGGTCACAT---------AACAGCTGCTCTTTTATACACATTCCGATGCTCTTTTTTCGAAGGA-----------ACTGACTTTT-----TTTTGGCGA----ATGAAATTTGTATCAA--------AACATTTGATATAGTGAAGATACTA--------AACATTTTTTGAAGTTTCAAAGTTCCG-----------------TCTTCAAAACA-----
s caeRem4.Crem_Contig24  264780 345 +  1162296 -CGTCTTCAATATAATATCAATAAACTCTTTTTTGCCTGAATGAAAACCTTTCAACATTCGACACCGACAC-------TCCGCCGT----TTTTATAATCCGTCgaaa---------acacagtttttatGGC-------------------------------CAGGGATTTGC----TCTCCGAGGTTTCGAAGCCTCACCAATAGGTCAGACGTAAGCAACAACAGCTGCCATTCca--------actctctttctctgcaCAAAAATCGGCAGCGACAactactttt-----ttatttct-----ttccaaTATGTGTACTCTTCTATATATATGTTTTTCATCGGGAAC-----CCATC--AAATTCGTATCGAAAGTCGCAAAggaacttttttcgtttcgaatTCTTCCGTCAAAAccg
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514    68379 297 -   141934 ---------------------------c-------------------------AACATTCGACACCGACAGCTCTGTCTCTTCCTTTCCATTTTATAATCCGTCAGAA---------ACACCGTTTTTATGATTGGTCggtttgagaaaagagagagagtaaaGGAGGAGGTTGC-------TCGAGGTTTCGTAG-CTCAACAATGGGTCAGACGTGAGCAAAAACAGCTGTCAcgg-------------gtaattttttttacaacaA----ACTCGAAACCCAATTTTCATCCTAACtcccaatt-tttaaatatgaaTACT--------GCCACTTT---------GATCTCGT-CCGTT--GAATTTGTATAAAAATCTGTGACGCAG-----------------TTGTTcgcaaa-----
i caeSp111.Scaffold514  I 927 I 5
s caePb3.Scfld02_62      369365 265 -   783054 ------------------------------------------------------------------------------TTCTCCGCCCCATTTTATAATCCGTCGGAA---------ACACAGTTTTTATGAT------------------------------GCAGGGATTTGCCTGCTCTTCGAGGTTTCGGAG-CTCAGCAATAGGTCAGACGTAAGCAACAACAGCTGCCATTG---------------AGTATTTTGCACAAGGC----CAGCGACAActactttt-----ttatttcgaatcgTTTCAATGTGCACTCT--TCTTTAACCGCTTTCTCCCATCAAAATTCGTATcattacgattttttttcgaattccgaaACTCAA------------AACACCCTTCCGCacc-----
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966  131880 16523 +   140921 T
e cb4.chrX                13808 423 + 21540570 I

a score=3856.000000
s ce10.chrX             1110828 53 + 17718866 AAAAACAAAGCAAAAA--------------AAAAGTTCAGTTGG-------TTTTGGGT--GTGCACCTAGTCT---CA
s cb4.chrX                14231 78 + 21540570 aaaaaaatagcgaaaaaagaTCGGTGCAGTTGAAGTTGGGTTGATGGTGACTTCAAGGTCCGTGCACCTCC-CCCCACA
i cb4.chrX              I 423 C 0
s caeRem4.Crem_Contig24  265127 73 +  1162296 aaatcaaaaaaaagagaagttcaGTGCAATCCGAGTTGAGTCGGTGGTGACTTTGGGGT--GTGCACCTAG-CT---CA
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514    68681 54 -   141934 gaagaa----taaaaa--------------ccACATTGAGACAA-GGATGCTTCTGGGT--ATACACCTAG-CT---CA
i caeSp111.Scaffold514  I 5 C 0
s caePb3.Scfld02_62      369635 59 -   783054 aaaaaaaaagcaaaag--------------ttcAGTGGATTCGC-GGTGGTTTGGGGAT--GTGCACCTATCCT---TC
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17966  131880 16523 +   140921 T

a score=35649.000000
s ce10.chrX             1110881 51 + 17718866 ACGCCATATGACAG---AATGT--AGCGTCTGCTGCTGCTGGCAGTTACGG-CTCTG
s cb4.chrX                14309 53 + 21540570 ACGCCATATGACAGAGCAATGTAGAGCGTCTGCTGT----GGCAGTTACGGCCTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  265200 47 +  1162296 ACGCCATATGACAG---AATGT--AGCGTCTGCTGT-----GCAGTTACGGCCTCTG
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514    68735 47 -   141934 ACGCCATATGACAG---AATGT--AGCGTCTGTTGT-----GCAGTTACGGCCTCTG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      369694 47 -   783054 ACGCCATATGACAG---AATGT--AGCGTCTGTTGT-----GCAGTTACGGCCTCTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   13645 35 -   140921 ACGCCATATGAC------------AACTTCTGTTGT-----TTCTTTGC-----CTG
i caeJap4.Scaffold17966 I 7139 C 0

a score=-840.000000
s ce10.chrX             1110932 2 + 17718866 GC-
s cb4.chrX                14362 1 + 21540570 -C-
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514    68782 1 -   141934 -C-
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      369741 1 -   783054 -C-
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   13680 2 -   140921 -CT
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  265247 2 +  1162296 I

a score=61439.000000
s ce10.chrX             1110934 115 + 17718866 ACGCCAGATGCCTACGCCTGT--------TG--TGTTTCATCTCATACCTCTGTACTC-----------------------GAGGTTTTACCCCCCTCCTACCCCCACTGTTTATTACTTTGCTCGA--CATGTGCTGTTCTCAAGTTAT
s cb4.chrX                14364 128 + 21540570 ACGCCAGATGCCTACGCCTGTTCTCTGTATG--TGTTTCATC---TACCTCTGTACTCGTAGGGAGGGACAGAAAGAGATAGAGGTTCT-----------------TCTGTTTATTACTTCACACAAGTCGTGTGTTGTTCTCaagtttt
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  265249 107 +  1162296 ACGCCAGATGCCTACGCCTGT--TGTGTGTG--TGTTTCTTC---TACCTCTGTACTC-----------------GGGAGAGAGGTTCT-----------------TCTGTTTATTACTTTACTCAA--CATGTGCTGTTCTCAAGTTAT
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514    68784 106 -   141934 ACGCCAGATGCCTACGCCTGT------TGTGAATGTTTCCTC---TATTTTTGTACTC------------GG-CAGAACGAAAGGTTCT--------------TTCTCCGT------CATTACTGCA--CATGTGTTGTTCTCAAGTTAT
i caeSp111.Scaffold514  I 1 I 257
s caePb3.Scfld02_62      369743 111 -   783054 ACGCCAGATGCCTACGCCTGT------TGTG--TGTTTCTTC---TACCTCTGTACTC------------GGAAAGAAGGAAAGGTTCT--------------CTTTCTGTTTATTACTTTGCTCAA--CATGTGCTGTTCTCAAGTTAT
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   13682  85 -   140921 ACGCCAGATGCCTACGCCTGT------------TGTATCATC---TACCTA-GAACGC------------------------AGTTTCT--------------------GTTTATTACTTTG-TCAA--CATGTGCTCTTTTCGAATT--
i caeJap4.Scaffold17966 C 0 C 0

a score=-988.000000
s ce10.chrX             1111049 18 + 17718866 TTGGCATCCCTTAGCATA
s cb4.chrX                14492 15 + 21540570 ---atgatttttccaGTG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  265356 15 +  1162296 ---TTGAGTTTTCTTATA
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62      369854 18 -   783054 TTGATAGTTCTTCAAATA
i caePb3.Scfld02_62     C 0 I 372
s caeJap4.Scaffold17966   13767 17 -   140921 TCGTCAACtttcaatgt-
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    68890 257 -   141934 I

a score=-1924.000000
s ce10.chrX             1111067 42 + 17718866 ACCCACCT--CCTCACG-----AACTTTTT--TTTTACTTTTTTTTTCCCC
s cb4.chrX                14509 33 + 21540570 ----------Cctcaaa-----aacttttg--ttgT-CTTCAAATTTTATC
i cb4.chrX              I 2 I 1
s caeRem4.Crem_Contig24  265374 43 +  1162296 GTGATGATGCtttcaaa-----cgttttcg--tttt-cttccgttttcttc
i caeRem4.Crem_Contig24 I 3 C 0
s caeJap4.Scaffold17966   13784 43 -   140921 --------ttctttacgttggcaatttttgaattttaattcaatttaaaac
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      369872 372 -   783054 I
e caeSp111.Scaffold514    68890 257 -   141934 I

a score=-277.000000
s ce10.chrX             1111109 10 + 17718866 ATTTAGTTAA
s cb4.chrX                14543 10 + 21540570 ATTAGTTTAA
i cb4.chrX              I 1 I 125
s caeJap4.Scaffold17966   13827  4 -   140921 attt------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      369872 372 -   783054 I
e caeSp111.Scaffold514    68890 257 -   141934 I
e caeRem4.Crem_Contig24  265417  0 +  1162296 C

a score=1008.000000
s ce10.chrX             1111119 16 + 17718866 CTTTATTGTTTAGTTT
s caeJap4.Scaffold17966   13831 15 -   140921 -tttattatttatttt
i caeJap4.Scaffold17966 C 0 I 78
e caePb3.Scfld02_62      369872 372 -   783054 I
e cb4.chrX                14553 125 + 21540570 I
e caeSp111.Scaffold514    68890 257 -   141934 I
e caeRem4.Crem_Contig24  265417  0 +  1162296 C

a score=0.000000
s ce10.chrX             1111135 185 + 17718866 TTTCAAAAGTTGTTATCTGATTTTTCATGTTTTTCACTTCATTCCTTTATTCCGTTTAAAAATTCTAGCTTGTGAAATTTTCATGATTCCACCTAACACCTCAAAACGTATACCAACTCGTTGAATTCTTAATTTTCATATTTAACTCCAAATTGAAAGAGTTTTCTCACTTCCAGAAATTGCTA
e caePb3.Scfld02_62      369872 372 -   783054 I
e caeJap4.Scaffold17966   13846  78 -   140921 I
e cb4.chrX                14553 125 + 21540570 I
e caeSp111.Scaffold514    68890 257 -   141934 I
e caeRem4.Crem_Contig24  265417   0 +  1162296 C

a score=-3786.000000
s ce10.chrX             1111320 610 + 17718866  
s caeRem4.Crem_Contig24  265417 405 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      369872 372 -   783054 I
e caeJap4.Scaffold17966   13846  78 -   140921 I
e cb4.chrX                14553 125 + 21540570 I
e caeSp111.Scaffold514    68890 257 -   141934 I

a score=-740.000000
s ce10.chrX             1111930 4 + 17718866 TTTA--
s caeRem4.Crem_Contig24  265822 4 +  1162296 --TTAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69147 4 -   141934 TTTT--
i caeSp111.Scaffold514  I 257 C 0
e caePb3.Scfld02_62      369872 372 -   783054 I
e caeJap4.Scaffold17966   13846 78 -   140921 I
e cb4.chrX                14553 125 + 21540570 I

a score=3732.000000
s ce10.chrX             1111934 24 + 17718866 ------TAACATTACTGACAATAGTTGCCG
s caeRem4.Crem_Contig24  265826 30 +  1162296 TCATACTATCCACGCTGACATTAGCCGCCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69151 24 -   141934 ------TGTCATCACTGGCACTAGTCACTG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      370244 24 -   783054 ------TGTCCGTGCTGGTTTTAGTGATAG
i caePb3.Scfld02_62     I 372 C 0
e caeJap4.Scaffold17966   13846 78 -   140921 I
e cb4.chrX                14553 125 + 21540570 I

a score=12071.000000
s ce10.chrX             1111958 34 + 17718866 CTCAAGAATCCGCAGATCAGTTATGCAGTAGTTT
s cb4.chrX                14678 34 + 21540570 CTGATGAAACACCAGATCAGTTATGCAATAATTT
i cb4.chrX              I 125 C 0
s caeRem4.Crem_Contig24  265856 34 +  1162296 CCGAACAGTCCGCAGACCAGTTATGTAGCAGTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69175 34 -   141934 GAGAAAGTACAGCGAAGGAATTGTGCGGAAGTTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      370268 34 -   783054 CTGACCAAACGGCAGAACAGTTATGTAGCAGTTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   13846 78 -   140921 I

a score=67739.000000
s ce10.chrX             1111992 70 + 17718866 CGATGCCCAGCAGAGCTGTGGACAGTGTATCAAAGCACATGCAGAGTGTGCATGGTGTATTGATCCCGTA
s cb4.chrX                14712 70 + 21540570 GGATGCTCAGCAAAGTTGTGGACAATGCATCAAAGCTCATGCAGAATGCGCTTGGTGCATTGATCCTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  265890 70 +  1162296 CGATGCCCAGCAAAGTTGTGGTCAGTGTATCAAGGCTCATGCCGAATGTGCATGGTGTATTGACCcagtg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69209 70 -   141934 GGATGCTCAACAAAGTTGTGGTCAGTGTATCAAAGCGCACACAGAATGTGCATGGTGCATAGATCCGGTA
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      370302 70 -   783054 TGATGCTCAACAAAGTTGTGGTCAATGTATAAAAGCACACGCTGAATGCGCATGGTGTATAGACCCGGTA
i caePb3.Scfld02_62     C 0 I 36
s caeJap4.Scaffold17966   13924 70 -   140921 CAGTTCTCAACAAAGTTGCGGGCAGTGTATAAAAGCTCACTCGGAATGCGCTTGGTGTATAGATCCGGTA
i caeJap4.Scaffold17966 I 78 C 0

a score=-66.000000
s ce10.chrX             1112062 4 + 17718866 TGTT
s cb4.chrX                14782 4 + 21540570 AGTT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  265960 4 +  1162296 agtt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69280 3 -   141934 Agt-
i caeSp111.Scaffold514  I 1 C 0
s caeJap4.Scaffold17966   13994 4 -   140921 AGAT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370372 36 -   783054 I

a score=546.000000
s ce10.chrX             1112066 1 + 17718866 T
s caeRem4.Crem_Contig24  265964 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold514    69283 1 -   141934 t
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   13998 1 -   140921 T
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370372 36 -   783054 I
e cb4.chrX                14786 4 + 21540570 I

a score=-113.000000
s ce10.chrX             1112067 7 + 17718866 ACTTTAA
s caeSp111.Scaffold514    69284 7 -   141934 aaattca
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   13999 7 -   140921 GCCTAAA
i caeJap4.Scaffold17966 C 0 I 23
e caePb3.Scfld02_62      370372 36 -   783054 I
e cb4.chrX                14786 4 + 21540570 I
e caeRem4.Crem_Contig24  265965 10 +  1162296 I

a score=91.000000
s ce10.chrX             1112074 1 + 17718866 A
s caeSp111.Scaffold514    69291 1 -   141934 a
i caeSp111.Scaffold514  C 0 I 22
e caePb3.Scfld02_62      370372 36 -   783054 I
e caeJap4.Scaffold17966   14006 23 -   140921 I
e cb4.chrX                14786 4 + 21540570 I
e caeRem4.Crem_Contig24  265965 10 +  1162296 I

a score=0.000000
s ce10.chrX             1112075 603 + 17718866  
e caePb3.Scfld02_62      370372  36 -   783054 I
e caeJap4.Scaffold17966   14006  23 -   140921 I
e cb4.chrX                14786   4 + 21540570 I
e caeSp111.Scaffold514    69292  22 -   141934 I
e caeRem4.Crem_Contig24  265965  10 +  1162296 I

a score=339.000000
s ce10.chrX             1112678 18 + 17718866 gtgCATATGTGAATACTT
s cb4.chrX                14790 18 + 21540570 GTACATGttcgaaagaat
i cb4.chrX              I 4 C 0
e caePb3.Scfld02_62      370372 36 -   783054 I
e caeJap4.Scaffold17966   14006 23 -   140921 I
e caeSp111.Scaffold514    69292 22 -   141934 I
e caeRem4.Crem_Contig24  265965 10 +  1162296 I

a score=-493.000000
s ce10.chrX             1112696 17 + 17718866 TTGTTTCGCAAAAAAA-----C
s cb4.chrX                14808  8 + 21540570 tttttta--------------c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  265975 22 +  1162296 ttttttaacagaaaaaagttta
i caeRem4.Crem_Contig24 I 10 C 0
e caePb3.Scfld02_62      370372 36 -   783054 I
e caeJap4.Scaffold17966   14006 23 -   140921 I
e caeSp111.Scaffold514    69292 22 -   141934 I

a score=910.000000
s ce10.chrX             1112713 1 + 17718866 T
s cb4.chrX                14816 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  265997 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      370408 1 -   783054 T
i caePb3.Scfld02_62     I 36 C 0
s caeJap4.Scaffold17966   14029 1 -   140921 T
i caeJap4.Scaffold17966 I 23 C 0
e caeSp111.Scaffold514    69292 22 -   141934 I

a score=97564.000000
s ce10.chrX             1112714 110 + 17718866 TTCAGCACTCTTCCCTTACAAACCGATGCCAGCTGAAATCCAAGTTTACCAATGAGACATGCACGCCGCACTTGGTGTATTCTCCACAAACCGCTCAGGTCAAAATTCAA
s cb4.chrX                14817 110 + 21540570 ttcagcATTCTTCTCTTGTTAATCGGTGTCAATTAAAGTCTAAGTTTACTAACGAAACTTGTACCCCTCATTTGGTTTATTCTCCTCAAACTGCCCAAGTCAAAACCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  265998 110 +  1162296 ttcagcATTCCTCCCTCACAAACCGATGCCAATTGAAATCCAAATTCACAAATGAGACCTGCACACCACATTTGGTATACTCCCCACAAACCGCTCAAGTCAAGACTCAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69314 110 -   141934 TTCagcattcatttttgataaaccGATGCCAACCAAAGTCTCAATTCACGAATGAAACTTGCACTCCACACTTAGTATACTCTCCGCAAACTGCCCAGATTAAAACTCAA
i caeSp111.Scaffold514  I 22 C 0
s caePb3.Scfld02_62      370409 110 -   783054 TTCAGTATTCCTCCCTGACAAATAGATGTCAATTGAAATCGAAGTTCACCAATGAAAGCTGTACCCCACATTTGGTATATTCCCCTCAAACTGCTCAAGTGAAAACTCAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   14030 110 -   140921 TCTAGCACTCTATCTTGACAAACCGATGCCAATGGAAATCAAAGTTTACCAACGAGACGTGCAGTCCACATTTGATTTATTCTCCGCAAACTGCTCaaatcaaaattcaa
i caeJap4.Scaffold17966 C 0 C 0

a score=2097.000000
s ce10.chrX             1112824 3 + 17718866 CAA
s cb4.chrX                14927 3 + 21540570 CAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  266108 3 +  1162296 CAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      370519 3 -   783054 CAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   14140 3 -   140921 caa
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    69424 0 -   141934 C

a score=641.000000
s ce10.chrX             1112827 5 + 17718866 GTAAG
s cb4.chrX                14930 5 + 21540570 GTAgg
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24  266111 5 +  1162296 GTAag
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   14143 3 -   140921 gta--
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370522 0 -   783054 C
e caeSp111.Scaffold514    69424 0 -   141934 C

a score=-3055.000000
s ce10.chrX             1112832 36 + 17718866 TGTTACAGTGGTATAGATCCTCGCTGTTTAACCTTT
s caeRem4.Crem_Contig24  266116  4 +  1162296 catt--------------------------------
i caeRem4.Crem_Contig24 C 0 I 6
s caeJap4.Scaffold17966   14146 12 -   140921 -----------------------tgattttatttt-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370522  0 -   783054 C
e cb4.chrX                14935 10 + 21540570 I
e caeSp111.Scaffold514    69424  0 -   141934 C

a score=-8256.000000
s ce10.chrX             1112868 74 + 17718866 AAAATGTTACAATTTTTGAAAGTAAAACAGCGAGGAGGCATACCCATTGGAGCCTAATTTTCCAACTTTTTCTC--
s cb4.chrX                14945 29 + 21540570 aaaattctATGTTTct-----------------------------------------ttaaactattt----tt--
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24  266126 43 +  1162296 ggaattggaaGCTTTTAGACA-------------------------------CGTCATCAACAAATTTTCCGTT--
i caeRem4.Crem_Contig24 I 6 C 0
s caeJap4.Scaffold17966   14158 34 -   140921 ---gttttgttttatt---------------------------------------gcttGGCCCACTCTCATTTTA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370522  0 -   783054 C
e caeSp111.Scaffold514    69424  0 -   141934 C

a score=1503.000000
s ce10.chrX             1112942 3 + 17718866 CAG
s cb4.chrX                14974 3 + 21540570 tag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  266169 3 +  1162296 TAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    69424 3 -   141934 CAG
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   14192 3 -   140921 AAG
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370522 0 -   783054 C

a score=129885.000000
s ce10.chrX             1112945 288 + 17718866 AACTTACCACTTGAAACCAAACAGCATGATGGTAAAACCATTGTTCGACAACAGCCACAAGCGGTTTCCGTCCGTCTAATGCCATGTAAGACTTGCGTTTTATTTTTTAAATACGTAACAT--TTTCGATAATTTG---CAACTTTG-----------TAGCTCACTCCGCCACCGTTTCTTTCAAGTACCTGCATCAAACTGACCCAAGCAGACGGAGCACCGAACCCGAGACTATGGAAATTCAGACTTCTGATGTTAAAGATACTCCACTGCAATTGAAATTTTTCATTGTCTGTGATGGG
s cb4.chrX                14977 274 + 21540570 aatcttccaCTTGAAACTAAGCAACACGATGGGAGAACCGTCGTTCGACTACAACCACAAGCCGTTTCAGTTCGACTCATGCCTGG-----------------TTTAGAAAATGGATTCGT--TCTAGACAATCTCATCTGATTTTG-----------CAGGACACTCATCGACAGTTACCTTCAAGTATCTTCACCAAACTGATGTGAATAGACGAGGTACCGAGCCAGAAACCATGGAGATTCAAACTTCGGATGTCAAAGATTCGCCGATCAACTTGACATTTTATATTGTTTGCGACggg
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig24  266172 277 +  1162296 AACTTGCCCCTCGAGACCAAGCAACACGATGGAAAAACCGTTGTTCGACTCCAACCACAAGCGGTGTCAGTTCGTCTCATGCCAGGTA------------Tactttagaaaa---atatat--cccagaaaa-atcat-tatttttg--------tttcaggacACTCCGCCACAGTCTCCTTCAAATACCTCCACCAAACTGACCCGAATAGAAGATCTACCGAGCCAGAAACCATGGAAATCCAAACATCCGATGTCAGAGACTCTTCACTCAATTTGAAGTTCTTCATCGTATGCGAAGGG
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold514    69427 228 -   141934 AATTTGCCACTGGAAACAAAACAGCACgatggaaaaacaattgttcGGCTTCAGCCACAAGCGGTTTCCGTTCGTCTCATGCCCGG----------------------------------------------------------------------------TCATTCAGCTACTGTTTCATTCAAGTACTTACATCAATCCGATGTCAATAGGAAATCTGCCGAACCAGAAACTatggaaattcaaacttCAGATGTTAGGGAATCGCCGCTTGCtctcaaattttctattttgtgTGAAAAG
i caeSp111.Scaffold514  C 0 I 38
s caePb3.Scfld02_62      370522 228 -   783054 AACTTGCCATTGGAAACGAAGCAACATGATGGAAAAACTATTGTGCGCCTTCAACCACAAGCAGTTTCTGTTCGTCTTATGCCTGG----------------------------------------------------------------------------ACATTCTGCTACAGTGTCCTTCAAGTACTTCCATCAATCTGATCAGAATAGAAGATCAACTGAACCGGAGACAatggaaattcaaacttctgaTGTCAGAGACTCTCCGCTGAACCtcaagtttttcattgtttgtGATGGG
i caePb3.Scfld02_62     C 0 I 4
s caeJap4.Scaffold17966   14195 290 -   140921 AATCTGCCACTTCAATCCTTCCACCATGATGGTAAAACTCTAGTCAGACTTCAACCCCAAGCTACTTCTGTTCGATTGATGCCAGG--------------TATGTATTCAAATTGAACTattatttatattatttttttaaactttcacaATTACTTTAAGGTAACTCAGCGACAGTTTCATTCAAATATCTTCATCAAAGTGACCCGCAACGAAAATCTTCGGAACCCGATCAAATGATCATTCAAACGTCAGAAATAAAAGACACTCCTTTGAAGCTCAAATACTTTATAGACTGTGATGGG
i caeJap4.Scaffold17966 C 0 C 0

a score=-14532.000000
s ce10.chrX             1113233 37 + 17718866 TAGGTGA---AGAT-----T--TCGAAAAACAATTTTTAT----AGGAATC-------------
s cb4.chrX                15263 30 + 21540570 ttgtagc---atGTGAATATAATTGTAACATA------------------C-------------
i cb4.chrX              I 12 I 1
s caeRem4.Crem_Contig24  266457 39 +  1162296 tcggaga---aattacTGAT--TTACAACttattttcttc-------catt-------------
i caeRem4.Crem_Contig24 I 8 I 1
s caePb3.Scfld02_62      370754 36 -   783054 TTGGAGAT--GGTtcgttat--ttgaaaaaaaagtttttt------------------------
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold17966   14485 55 -   140921 -------TTTGTAtttatat--tttaaatttatatTGTATTTCAAGAGACCATGATTTCAAAAC
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    69655 38 -   141934 I

a score=62488.000000
s ce10.chrX             1113270 73 + 17718866 -ATTTCAGAGAGTTGAAGGAGACCAAGTCGTGCCGTGTGCAGAATAATCAAATCGTTGAATTTAAGATTGAAGT
s cb4.chrX                15294 73 + 21540570 -GTTTCagggaattgaaaaaaaccaaatcctGCCGAGTCCAGAACAATCAGATTgtcgaattcaaaattgaggt
i cb4.chrX              I 1 I 14
s caeRem4.Crem_Contig24  266497 73 +  1162296 -tttttagaGAACTGAAGGAAACCAAGTCATGCCGTGTTCAGAATAATCAAATCGTTGAATTCAAGATTGAGGT
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    69693 73 -   141934 -aattcagagaatggaaagaaaCCAAGTCGTGCAAAGttcaaaacaatcaaattGTGGAGTTCAAAATAGAAGT
i caeSp111.Scaffold514  I 38 C 0
s caePb3.Scfld02_62      370790 73 -   783054 -tttgcagagagctgaaagaaacaaaatcgTGCCGagttcaaaacaatcaaattgtGGAGTTCAAAATTGAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   14540 74 -   140921 GTTTACAGCGAAACAAGAGAGACAAAATCCTGCCAAGTAAAGGATAACCAGATTGTAGAATTTAAAATTGAGGT
i caeJap4.Scaffold17966 C 0 C 0

a score=-1650.000000
s ce10.chrX             1113343 10 + 17718866 GAGT--------------CTTTTT
s caeRem4.Crem_Contig24  266570 16 +  1162296 GGGTTGTGTG--------gctttt
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold514    69766 10 -   141934 GAGT--------------GTTTTT
i caeSp111.Scaffold514  C 0 I 95
s caePb3.Scfld02_62      370863 24 -   783054 GAGTTGTATTCCAAacgcattttt
i caePb3.Scfld02_62     C 0 I 51
s caeJap4.Scaffold17966   14614  4 -   140921 GAGC--------------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                15367 14 + 21540570 I

a score=0.000000
s ce10.chrX             1113353 10 + 17718866 TTGTTGAAAA
e caePb3.Scfld02_62      370887 51 -   783054 I
e caeJap4.Scaffold17966   14618  0 -   140921 C
e cb4.chrX                15367 14 + 21540570 I
e caeSp111.Scaffold514    69776 95 -   141934 I
e caeRem4.Crem_Contig24  266586 10 +  1162296 I

a score=-1308.000000
s ce10.chrX             1113363 19 + 17718866 ---TTTTGTTTGATCTCCAAAA
s caeRem4.Crem_Contig24  266596 19 +  1162296 ---tgttgtatattttatgaaa
i caeRem4.Crem_Contig24 I 10 I 190
s caeJap4.Scaffold17966   14618  9 -   140921 TCACCCCGT-------------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370887 51 -   783054 I
e cb4.chrX                15367 14 + 21540570 I
e caeSp111.Scaffold514    69776 95 -   141934 I

a score=-439.000000
s ce10.chrX             1113382 47 + 17718866 CTGGCAAAA-----AAAAGTTGTGGATTGCTCGTCACTGATATGGAATCTGC
s caeJap4.Scaffold17966   14627 28 -   140921 CTGACTAAATACCTAAAGGTTT------------------------ATTTAC
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370887 51 -   783054 I
e cb4.chrX                15367 14 + 21540570 I
e caeSp111.Scaffold514    69776 95 -   141934 I
e caeRem4.Crem_Contig24  266615 190 +  1162296 I

a score=0.000000
s ce10.chrX             1113429 724 + 17718866  
e caePb3.Scfld02_62      370887  51 -   783054 I
e caeJap4.Scaffold17966   14655   0 -   140921 C
e cb4.chrX                15367  14 + 21540570 I
e caeSp111.Scaffold514    69776  95 -   141934 I
e caeRem4.Crem_Contig24  266615 190 +  1162296 I

a score=598.000000
s ce10.chrX             1114153 11 + 17718866 TATTTCCGAAA
s cb4.chrX                15381 11 + 21540570 TATTTCCCCAA
i cb4.chrX              I 14 C 0
e caePb3.Scfld02_62      370887 51 -   783054 I
e caeJap4.Scaffold17966   14655  0 -   140921 C
e caeSp111.Scaffold514    69776 95 -   141934 I
e caeRem4.Crem_Contig24  266615 190 +  1162296 I

a score=-440.000000
s ce10.chrX             1114164 5 + 17718866 ----TTTCA
s cb4.chrX                15392 8 + 21540570 ctaattta-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      370938 5 -   783054 ----tttcg
i caePb3.Scfld02_62     I 51 C 0
e caeJap4.Scaffold17966   14655 0 -   140921 C
e caeSp111.Scaffold514    69776 95 -   141934 I
e caeRem4.Crem_Contig24  266615 190 +  1162296 I

a score=540.000000
s ce10.chrX             1114169 4 + 17718866 AAAT
s cb4.chrX                15400 3 + 21540570 -tat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  266805 3 +  1162296 -AAC
i caeRem4.Crem_Contig24 I 190 C 0
s caePb3.Scfld02_62      370943 3 -   783054 -aat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   14655 0 -   140921 C
e caeSp111.Scaffold514    69776 95 -   141934 I

a score=546.000000
s ce10.chrX             1114173 1 + 17718866 T
s cb4.chrX                15403 1 + 21540570 t
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  266808 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 I 1
s caeJap4.Scaffold17966   14655 1 -   140921 T
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      370946 0 -   783054 C
e caeSp111.Scaffold514    69776 95 -   141934 I

a score=116357.000000
s ce10.chrX             1114174 132 + 17718866 TTCAGGTTCTCGTCAACTCGTGTTCCAGTACCGGCGATATTACACTATCAGTAGGTATTCTTAGACAACGCACAATTGCTGGCCTCTACGTCACCACGATTTGCGGGTGTGAATGCGAAAAGCATCCGGTAA
s cb4.chrX                15405 132 + 21540570 tcaaggTTACCGTCAACTCTTGTTCGAATTCCGGCGATGTTACACTCTCTGTTGGTATTCTTGGACAACGAACAATTGCTGGCATATACGTCACCACCATCTGCGGGTGTGAATGCGAAAAACATCCAGTAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  266810 132 +  1162296 TTAAGATACTTGTCAATTCTTGCTCCAGTACCGGCGATATTACACTCTCAGTTGGTATTCTTGGACAACGCACGATTGCTGGTCTCTACGTCACAACTATCTGCGGGTGTGAATGCGAAAAGCATCCGGTAA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    69871 132 -   141934 TTTAGATGCTTGTAAAATCTTGCTCAAGTACCGGTGACATTACACTGTCAGTGGGAATATTGGGACAACGCACAATTGCTGGCCTTTACGTCACGACTATCTGTGGGTGTGAATGTGAGAAACACCCGGTAA
i caeSp111.Scaffold514  I 95 C 0
s caePb3.Scfld02_62      370946 132 -   783054 ttcagattctcgtAAACTCTTGTTCAACTACCGGCGATATTACACTTTCTGTGGGTATTCTTGGACAACGCACAATCGCTGGACTCTATGTCACCACAATCTGCGGTTGTGAGTGTGAGAAACACCCGGTAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   14656 132 -   140921 TGCAGTTGTTTGTGAGCACTTGCTCATCGGCAGGAGATATTACACTTTCTGTGGGGGTTCAAGGTCAGCGAACTATTGCCGGCCTTTACGTCAATACAATATGTGGATGCGAGTGCGAAAAGCACCCGGTAA
i caeJap4.Scaffold17966 C 0 I 700

a score=-7557.000000
s ce10.chrX             1114306  87 + 17718866 GATGATC--------------CCAGCCACTTAGCA-CTTTTTACGAAATTTGAAACTTTT---CTCTTTTGTTTCCTAA------------TCACTGGCAATCATCAAAAAAGAA-------------TA
s cb4.chrX                15537 109 + 21540570 GCTAATATCTTATCTGATATGCGCCACTCTTAGCA-CCTCGT--GTAACTTGATACTTCGtgaagtttgaagttttttg-----ttcaaaaacttgGGAAAACTTTTTAAGATCT-------------CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  266942  86 +  1162296 GCTAATC--------------CGTGTCACTTCGCA-CCTCTT--GAAATTTg-----------agcttcaatttttttgaagcccttgaaaattttgaaaa---ttttgaacaat-------------ca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70003  57 -   141934 GATAATC-------------------CATTTAGCAGTTTTGC--GAAATCGgatactt--------ttttgttttc-------------------------------aaaaatat-------------cg
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      371078  99 -   783054 GATAATC-------------------TACTTAACA-CTTTGT--GTAATTTGAAACGTTT---TGCTTTTGTTTTCTAA-GGTTTTCGag-----gggaaaaaattgaaaaatatgagggataatttgca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   14788 700 -   140921 I

a score=129530.000000
s ce10.chrX             1114393 171 + 17718866 ATATTT--TTTTT---------------CGCAGGAAATCAATTCTCGATTGTGCCATCAAAACGGACATCTCGTCTGCGGACAATGTGTTTGTGATCAGTCACGTGGTGGGGATAAATGTGAATGTCCGCTTGCTTCGCATGGAGTTTCCAAGGCTTCTGAATTGGAGGACAAGTGCAGATTGTAAGA
s cb4.chrX                15646 175 + 21540570 ATAATCAGTTTTTAT-------------TCCAGGAAATAAACTCTCGGTTATGCCATCAGAATGGTCATTTGGTTTGTGGACAATGTGTATGCGATCCATCCCGCGGTGGAGACAAATGTGAATGTCCGTTGGCAACACTTGGAGTTTCGACTGCTTCAGAATTAGAAGACAAGTGtaaattgtaagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267028 188 +  1162296 aaaaccaactttttttatttttgttttcttcaggAGATCAACTCTCGACTCTGCCATCAAAATGGGCATCTTGTGTGCGGACAATGTGTTTGTGATCAGTCCCGTGGTGGAGATAAGTGTGAATGTCCATTGGCTTCTCATGGAGTGTCTACTGCCGTGGAATTGGAGAATAAGTGTAGATTGTGAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70060 173 -   141934 agatcttcttttt---------------tctaggagATCAACTCTCGTTTATGTCATCAAAATGGGCATTTAGTATGTGGACAATGCGTTTGTGATCAGTCTCGTGGTGGAGATAAATGTGAATGCCCGCTTGCTTCGCATGGTGTTTCAACCGCTGCCgaattagaaaataaatgcagattgtaagt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      371177 173 -   783054 aaatcaaaaatcg---------------tttAGGAAATCAACTCTCGTTTGTGCCATCAAAACGGACACCTCGTGTGTGGGCAGTGCGTTTGTGATCAGTCTCGCGGTGGGGACAAATGTGAATGTCCTCTAGCTACACATGGAGTTTCGACTGCTTTGGAGTTAGAGAATCAGTGTAGATTGTGAGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   15488 171 -   140921 --atgtttccatt---------------ttcaggaaatgaaCTCAATACTATGCCACCAAAACGGTCATTTGGTTTGTGGACAATGCGTTTGTGATAAAAGCCGCGGTGGGGATAAATGTGAATGTCCACTGGCTATGTACGATGTAACGACAGCAGAAATGCTGGAAGATAAATGTCGATTGTAAGA
i caeJap4.Scaffold17966 I 700 I 33

a score=-264.000000
s ce10.chrX             1114564 2 + 17718866 TT
s cb4.chrX                15821 2 + 21540570 tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267216 1 +  1162296 T-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70233 2 -   141934 tt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      371350 2 -   783054 TT
i caePb3.Scfld02_62     C 0 I 28
e caeJap4.Scaffold17966   15659 33 -   140921 I

a score=273.000000
s ce10.chrX             1114566 1 + 17718866 T
s cb4.chrX                15823 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    70235 1 -   141934 t
i caeSp111.Scaffold514  C 0 I 92
e caePb3.Scfld02_62      371352 28 -   783054 I
e caeJap4.Scaffold17966   15659 33 -   140921 I
e caeRem4.Crem_Contig24  267217 0 +  1162296 C

a score=182.000000
s ce10.chrX             1114567 2 + 17718866 TT
s cb4.chrX                15824 2 + 21540570 tt
i cb4.chrX              C 0 I 199
e caePb3.Scfld02_62      371352 28 -   783054 I
e caeJap4.Scaffold17966   15659 33 -   140921 I
e caeSp111.Scaffold514    70236 92 -   141934 I
e caeRem4.Crem_Contig24  267217 0 +  1162296 C

a score=646.000000
s ce10.chrX             1114569 7 + 17718866 GAAATTA
s caeRem4.Crem_Contig24  267217 7 +  1162296 GAAATTA
i caeRem4.Crem_Contig24 C 0 I 25
e caePb3.Scfld02_62      371352 28 -   783054 I
e caeJap4.Scaffold17966   15659 33 -   140921 I
e cb4.chrX                15826 199 + 21540570 I
e caeSp111.Scaffold514    70236 92 -   141934 I

a score=0.000000
s ce10.chrX             1114576 16 + 17718866 CAGAGCGTGAGAAACT
e caePb3.Scfld02_62      371352 28 -   783054 I
e caeJap4.Scaffold17966   15659 33 -   140921 I
e cb4.chrX                15826 199 + 21540570 I
e caeSp111.Scaffold514    70236 92 -   141934 I
e caeRem4.Crem_Contig24  267224 25 +  1162296 I

a score=646.000000
s ce10.chrX             1114592  96 + 17718866 AAAGTTCTCAATAAT--------ACAGTCAACATTAGATGTTTTTAGCAAAGACTAGTCTGCCAAATTTGACTTTTTTT-----TGAATTAGGGAAATACATAAAGTTG
s caePb3.Scfld02_62      371380 109 -   783054 AAATGTGTTAGTAATGGGTCTCCAACGCCAAAATTAGATAGCTATGGtctaaaatattattttaaCTTGGAAATGTTTTCCACATGGATcagtaattttctgaaaggtg
i caePb3.Scfld02_62     I 28 I 136
e caeJap4.Scaffold17966   15659  33 -   140921 I
e cb4.chrX                15826 199 + 21540570 I
e caeSp111.Scaffold514    70236  92 -   141934 I
e caeRem4.Crem_Contig24  267224  25 +  1162296 I

a score=0.000000
s ce10.chrX             1114688 139 + 17718866 CTGAGAATTACACTGACAATATTTACACTAAATGCAATAACCATATTGAGAGAGcacgtggtgtcagagtgtctcatttcggtttgatttacgtagatctacaaaaaaatacgggaattgagacgcagagttctcaact
e caePb3.Scfld02_62      371489 136 -   783054 I
e caeJap4.Scaffold17966   15659  33 -   140921 I
e cb4.chrX                15826 199 + 21540570 I
e caeSp111.Scaffold514    70236  92 -   141934 I
e caeRem4.Crem_Contig24  267224  25 +  1162296 I

a score=-2845.000000
s ce10.chrX             1114827 388 + 17718866 gatttcgaatggctaagat---cgtgttgac-gtcacctgtttgggcaacaaattcttgcattttttgtagatc-------gaaccgtaatggtacagATCAGAAACTGATCAAACTGTAATCCTTTGAACTCTACTTGCAAATAAATGTTTCCTGGCAAAACAATGTCAAGCTGGGTGATTTGTATCGTTGAACTCGGGGCAGCAAAAATGACGAGTTCTGACCATATTTTGATAACCGAACTACCAAAGTTAGGTTGTTGTATTATATACCAATGACGACCTGTTTGATCCTTTGTGCTAAGGTAGCCTTGCTTAGCCTTATAGTTTCGGAGTTCTGGAACTCTATATCGGGGACAAAAACCTTCAG-----------------AAGTAGAGTCCTCTCAAAACCA-----------------ATCGAGTA
s caePb3.Scfld02_62      371625 313 -   783054 GATTTCAAAT---TAAGATTTACatactctcaggctccagtgagggc----------tggaattTACAAAGACCACTTAGAGAAGcatttactttcagaccaccaatttatagaa----aattctt---attcctcgtaagaa-aaacattcccttgtg----agtGTTAggtt--------------------------------------actttttttcaacatatcCT------CAAACTA-------------ATTGGAATAAGTTCCTAGGTCGA-----TTGAT----------------------CTTAGC---ATAATTTC--AATTCTGATA------GTCGTAAGCCAAAAATCTCAAccagtttttgagagaacAAATGGGATCCTTTCAAAACCAGCAATTATGCTTTTCCTAactatca
i caePb3.Scfld02_62     I 136 C 0
e caeJap4.Scaffold17966   15659  33 -   140921 I
e cb4.chrX                15826 199 + 21540570 I
e caeSp111.Scaffold514    70236  92 -   141934 I
e caeRem4.Crem_Contig24  267224  25 +  1162296 I

a score=865.000000
s ce10.chrX             1115215 3 + 17718866 TTT
s cb4.chrX                16025 2 + 21540570 -TT
i cb4.chrX              I 199 I 1
s caePb3.Scfld02_62      371938 3 -   783054 gtt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   15692 3 -   140921 ttt
i caeJap4.Scaffold17966 I 33 C 0
e caeSp111.Scaffold514    70236 92 -   141934 I
e caeRem4.Crem_Contig24  267224 25 +  1162296 I

a score=60367.000000
s ce10.chrX             1115218 105 + 17718866 TTTCAGCAATTCATCTTCCCCAGTATGCAGTGCATCTGGAAAATGCAAGTGTGGACAATGCCAATGCAACAAACCTACTGTAAGTGGTGTTACCCTCATAAAAAT
s cb4.chrX                16028  93 + 21540570 TTTCAGTAACTCCTCTACTCCAGTATGCAgttcttctggaaaatgcaAATGTGGTCAGTGCCAGTGTAATAGACCTACGGTAGGTAGT------------AAGAT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  267249 102 +  1162296 TTCTAGCAATTCATCCTCCCCAGTCTGCAACGATTCCGGAAAATGCAAGTGTGGTCAATGCCAGTGCAACAAGCCTACGGTAAGTACTCCCACTCAC---CAAAT
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold514    70328  92 -   141934 tttcagcAATTCTTCGTCTTCCGTCTGCAGTTCTTCCGGTAAATGCAAGTGCGGTCAGTGCCAATGTAACAAACCAACTGTaggttta------------aaaa-
i caeSp111.Scaffold514  I 92 I 38
s caePb3.Scfld02_62      371941  92 -   783054 tttcagtaaCTCGTCATCCCCAGTGTGTGGATCCGCTGGAAAATGCAAGTGTGGTCAATGTCAATGTAACAAGCCTACGGTATGTTGA------------CAAC-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   15695  83 -   140921 ttCTAGCAACTCTTCTACCTCAGTGTGTTCAAGTTCCGGAAAATGCAAATGCGGGCAATGTCAATGTGATAAGCCTACGGTAA----------------------
i caeJap4.Scaffold17966 C 0 C 0

a score=-7602.000000
s ce10.chrX             1115323 34 + 17718866 AACTATACAAAATTT-----------TGTGTTGTTTTGAAATTTA
s cb4.chrX                16121 35 + 21540570 -AATGTGGGAAACAGTCT--------ttcattgttttgaaattc-
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24  267351 44 +  1162296 -CATCAACAAAACAGCTCAATAACAACTTGTTGTTATGAAATTCG
i caeRem4.Crem_Contig24 C 0 I 16
s caePb3.Scfld02_62      372033 21 -   783054 ------------------------AAGTTGTTTATTTGAAATGtg
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17966   15778 20 -   140921 ----------AACAgtacaaaaaaacttta---------------
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    70420 38 -   141934 I

a score=105924.000000
s ce10.chrX             1115357 127 + 17718866 ATATCTTGTTATACATCAT-----------AGGTGACCGGCAAGTTTTGTCAATGCGACAACGACAGCTGCCCGTTGGCGGTCAATGGAAAAGTGTGCTCTGGAAACGGAGTGTGCGACTGCGGAGTTTGCAAGTAAG
s cb4.chrX                16159 128 + 21540570 atATGACCTTCTTTATCTTC----------AGGTGACAGGTAAATTCTGTCAGTGCGACAATGACAGCTGTCCGCTGTCTTCCAATGGAAAAGTATGCTCTGGAAACGGAGTTTGCGACTGCGGAACTTGCAAGTATG
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24  267411 128 +  1162296 atatcatttttttgatcttc----------aGGTGACCGGCAAATTCTGTCAATGCGACAACGACAGCTGCCCACTGGCGGTCAATGGAAAAGTGTGCTCTGGAAACGGCGTATGCGATTGCGGAGTTTGCAAGTAAG
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold514    70458 121 -   141934 GTTTCGTG---ATCAC--------------AGGTGACTGGCAAGTTCTGCCAGTGCGACAACGACAGCTGCCCACTGGCGGTGAATGGGAAAGTGTGCTCCGGAAACGGAGTTTGCGATTGTGGCATTTGCAAGTGag
i caeSp111.Scaffold514  I 38 C 0
s caePb3.Scfld02_62      372056 138 -   783054 atttcatatttttcacattttttctcatctagGTGACCGGAAAATTCTGTCAATGCGACAACGACAGCTGCCCACCAGCGGTCAATGGAAAAGTGTGTTCTGGAAACGGAGTATGCGAATGCGGCATTTGCAAGTGAG
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17966   15798 124 -   140921 acaCAATAATAATTAA--------------AGATCAGCGGAAAATTCTGTCAGTGTGATAACGACAGCTGCCCATTGGCTTCAAATGGAAAGATCTGCTCAGGGAACGGAGTTTGCGATTGTGGGATTTGCAAGTGAG
i caeJap4.Scaffold17966 C 0 I 1686

a score=-8050.000000
s ce10.chrX             1115484 98 + 17718866 TGGTCGTAGTAATAATAACATTTGAGTGAACAAAAAATAGAACAATGAAA--TTCG---TATATGTTACATCACAATCAGCTTTACAAATTCGTACTTTTTGC
s cb4.chrX                16287 38 + 21540570 A---------------------------------------AACAATGAACGTTATA---TAAATGTTACAT--------------CAA---------CTTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267539 42 +  1162296 A----------------acgctt----------------caaaaaaaaacctttcg---TATATGTTACAT--------------------------TTTTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70579 43 -   141934 t--------------------------------------------ttaaaatttcgaaaaaaaaattgcat-------aGCTCTACAA---------TTTTGC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      372194 41 -   783054 C-------------------------------------------ATAAAAAATTCG---TATATGTTacaa-------agttttgata---------ttttgc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   15922 1686 -   140921 I

a score=71472.000000
s ce10.chrX             1115582 78 + 17718866 CAGATGCGAGATGGGATGGGAACGTGATGATTGCTCGTGCTCGACGGCATCCAACAATTGTGTGGACAATGGGGTAGG
s cb4.chrX                16325 78 + 21540570 CAGATGTGAAATGGGATGGGAACGCGACGATTGCTCTTGTTCAACGGCATCAAACAACTGCGTGGAGAACGGGGTCAg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267581 78 +  1162296 CAGATGCGAAATGGGATGGGAACGTGATGATTGCTCCTGCGAGACGGCGTCCAATAATTGTGTGGAGAATGGGGTAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70622 78 -   141934 CAGATGTGAAATGGGATGGGAACGTGATGACTGCTCTTGCGAAACCTCTTCGAACAACTGTGTGGAGAACGGGGTAAG
i caeSp111.Scaffold514  C 0 I 47
s caePb3.Scfld02_62      372235 78 -   783054 cAGATGCGAAATGGGATGGGAACGCGATGATTGTTCTTGTGAGACTGCTTCAAACAATTGCGTGGATAATGGGGTAAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   17608 78 -   140921 cagatGTGAAATGGACTGGGATCGAAACGACTGTTCCTGCTCTCTTTCTACTAACAATTGTATTGAAAACGGAGtgag
i caeJap4.Scaffold17966 I 1686 C 0

a score=91.000000
s ce10.chrX             1115660 1 + 17718866 T
s caeJap4.Scaffold17966   17686 1 -   140921 t
i caeJap4.Scaffold17966 C 0 I 50
e caePb3.Scfld02_62      372313 0 -   783054 C
e cb4.chrX                16403 0 + 21540570 C
e caeSp111.Scaffold514    70700 47 -   141934 I
e caeRem4.Crem_Contig24  267659 0 +  1162296 C

a score=-7130.000000
s ce10.chrX             1115661 45 + 17718866 GGTTGGGGGTCTGAAAATGTGAAGGCCAGGGTGCATGCATG-------------GAAA-
s cb4.chrX                16403 35 + 21540570 -----------tgaaatttcgcaatttgCAACGTGTCTCAT-------------GGAAA
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24  267659  9 +  1162296 -----------gga-------------------------at-------------gaaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      372313 45 -   783054 -------------AAAATGGGGAACCTGAGAAATGAATAATTCTGTGGTGAtcagaaa-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e caeSp111.Scaffold514    70700 47 -   141934 I

a score=-433.000000
s ce10.chrX             1115706 3 + 17718866 CT---A
s caePb3.Scfld02_62      372358 6 -   783054 gtttca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e cb4.chrX                16438 30 + 21540570 I
e caeSp111.Scaffold514    70700 47 -   141934 I
e caeRem4.Crem_Contig24  267668 0 +  1162296 C

a score=-339.000000
s ce10.chrX             1115709 32 + 17718866 GTTTATTAGTATGTCACCTTATTTGTCTTTAA
s caeSp111.Scaffold514    70747 32 -   141934 GTTTGTTTATATATAGTATTTTTCATCATGTA
i caeSp111.Scaffold514  I 47 C 0
s caePb3.Scfld02_62      372364 28 -   783054 gattcaacATTAATaagattt----tcgtgaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e cb4.chrX                16438 30 + 21540570 I
e caeRem4.Crem_Contig24  267668  0 +  1162296 C

a score=-14527.000000
s ce10.chrX             1115741 46 + 17718866 AAGAATAA--ACTAGCTTGATATTGCCTGTGAATTTGAGTTTTCTGGA-------------------------------
s cb4.chrX                16468 12 + 21540570 AAGCAAGA--Acta-----------------------------------------------------------------
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig24  267668  6 +  1162296 -----tga--att------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70779 32 -   141934 AAAAATGgtagtttttt----------------ctcaaatcttcCGTC-------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      372392 61 -   783054 aaaaatgt--gttatgT----------------TCTAAGCATGACGCTTATAAACTTAGCATAATAGTGGTTTTCCTGA
i caePb3.Scfld02_62     C 0 I 169
e caeJap4.Scaffold17966   17687 50 -   140921 I

a score=-20899.000000
s ce10.chrX             1115787 147 + 17718866 AAAGTGCAAATTGATACTGCATGTTG----------TTCAAAAGCTTGGAAAAACATC--------TCAAAAATATTTCTAATTAATCATCCAGCAGTGTATAAATTGTAATTCATTAATAGATAAGAAAATGGCTGCAAGTCTAACAATATATATT-----TTGTATTG----
s cb4.chrX                16480  86 + 21540570 ------------------tcatattt----------ttgaaaattcc-----aagatc--------ACTATTTTGCTTCTAAGT-----------------TTGATTTT---------------GTGAATATAG-------------AAGTTGTTTAAATAGCCTCACAATA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267674  65 +  1162296 -----------------------ttt----------ctcaaattt----------att--------ATAATAGTGGTTATAC----------------------ATTAC------------------ACTACAG-------------AAAATGTTTA-----CTCTGAAATCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70811  93 -   141934 -------------AAAAATCGT-TTTGTCTGCctgattgaaaata----------atttggGAAAAGTAATACCAgctc-------------------------atttt---------------cgaaaaacagcCGCA--------AATTTATGTT-----TCATACGG----
i caeSp111.Scaffold514  C 0 I 87
e caePb3.Scfld02_62      372453 169 -   783054 I
e caeJap4.Scaffold17966   17687  50 -   140921 I

a score=0.000000
s ce10.chrX             1115934 7 + 17718866 TGAAAAC
e caePb3.Scfld02_62      372453 169 -   783054 I
e caeJap4.Scaffold17966   17687 50 -   140921 I
e cb4.chrX                16566 0 + 21540570 C
e caeSp111.Scaffold514    70904 87 -   141934 I
e caeRem4.Crem_Contig24  267739 0 +  1162296 C

a score=182.000000
s ce10.chrX             1115941 2 + 17718866 TT
s caePb3.Scfld02_62      372622 2 -   783054 tt
i caePb3.Scfld02_62     I 169 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e cb4.chrX                16566 0 + 21540570 C
e caeSp111.Scaffold514    70904 87 -   141934 I
e caeRem4.Crem_Contig24  267739 0 +  1162296 C

a score=-8327.000000
s ce10.chrX             1115943  92 + 17718866 TTTGACCTTAACATTCTTAA----------------------ATTTATTTTTTCTAGGC---------GGTGTTTTTTTTCTGGGATACTTTGCATA--------------------------TTCAAAATTCTATAACACAGGTCCTC
s cb4.chrX                16566  17 + 21540570 ------------------------------------------CTTTATTATATCTTATC------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      372624 145 -   783054 ttcaaaaccagtatTTTTCCGACTGGCGagtgaaaacagttttttttttcgaactggTTGACCATTCCAGTGTTTTTACTCggaaaaactctggaaaactGGGAAACTGGCGTGGAAAACCAGTTCAAAA----ACGGCACCGGTCGCC
i caePb3.Scfld02_62     C 0 I 39
e caeJap4.Scaffold17966   17687  50 -   140921 I
e caeSp111.Scaffold514    70904  87 -   141934 I
e caeRem4.Crem_Contig24  267739   0 +  1162296 C

a score=0.000000
s ce10.chrX             1116035 10 + 17718866 TTTGCATTGC
e caePb3.Scfld02_62      372769 39 -   783054 I
e caeJap4.Scaffold17966   17687 50 -   140921 I
e cb4.chrX                16583  0 + 21540570 C
e caeSp111.Scaffold514    70904 87 -   141934 I
e caeRem4.Crem_Contig24  267739  0 +  1162296 C

a score=-3165.000000
s ce10.chrX             1116045 31 + 17718866 ATGAATTCACTTTAAACCTCATTCTTTTTAC----
s cb4.chrX                16583  7 + 21540570 ----------------------------TGAATCC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      372808 29 -   783054 -----atcatttcaaTAATTAGACTTCATGAGTT-
i caePb3.Scfld02_62     I 39 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e caeSp111.Scaffold514    70904 87 -   141934 I
e caeRem4.Crem_Contig24  267739  0 +  1162296 C

a score=1092.000000
s ce10.chrX             1116076 2 + 17718866 AT
s cb4.chrX                16590 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267739 2 +  1162296 AT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      372837 2 -   783054 AT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I
e caeSp111.Scaffold514    70904 87 -   141934 I

a score=1339.000000
s ce10.chrX             1116078 5 + 17718866 -TTTGA
s cb4.chrX                16592 5 + 21540570 -CTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267741 5 +  1162296 -CTAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70991 6 -   141934 TCTGAC
i caeSp111.Scaffold514  I 87 C 0
s caePb3.Scfld02_62      372839 5 -   783054 -CTGAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17687 50 -   140921 I

a score=104929.000000
s ce10.chrX             1116083 94 + 17718866 AGGAACTGTGCTCGAATAATGGGCGGTGTGAATGCAATCGTTGTGTTTGTAATATGGGGAAAACTGGGGCCTTCTGTGGATCTGACGAAAAGGT
s cb4.chrX                16597 94 + 21540570 AGGAATTGTGTTCCAATAATGGGCGATGTGAATGCAATCGTTGCGTGTGTAATATGGGTAACACTGGGGCCTTCTGTGGATCAATTGAAAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  267746 94 +  1162296 AGGAACTGTGCTCCAATAATGGGCGATGTGAGTGCAATCGTTGTGTTTGTAATATGGGTAAAACTGGGGCCTTCTGTGGATCTGATGAAAAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    70997 94 -   141934 AGGAACTGTGCTCCAATAATGGGCGATGTGAGTGCAACCGTTGTGTTTGCAATATGGGTAAAACTGGGGCCTTCTGCGGATCCGATGAAAAGGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      372844 94 -   783054 AGGAACTGTGCTCCAATAACGGGCGATGTGAATGCAATCGTTGTGTTTGTAACATGGGTAAAACCGGGGCATTCTGTGGATCTGATGAAAAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   17737 94 -   140921 AGGAAATGTGCTCCAACAATGGTAGATGTGAATGCAATCGATGTGTCTGCGATACAAATAGAACCGGGGCTTTCTGCGGATCTGAGGAACAGGT
i caeJap4.Scaffold17966 I 50 I 342

a score=1910.000000
s ce10.chrX             1116177 2 + 17718866 GA
s cb4.chrX                16691 2 + 21540570 GA
i cb4.chrX              C 0 I 893
s caeRem4.Crem_Contig24  267840 2 +  1162296 GA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    71091 2 -   141934 GA
i caeSp111.Scaffold514  C 0 I 6
s caePb3.Scfld02_62      372938 2 -   783054 GA
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-4027.000000
s ce10.chrX             1116179 263 + 17718866 -----ACTTTGTAGAGC---------------------------TAGAT--------AACGTCTTCTAATTGTACGGCTCAAAA---------TCACAATGAATTTAACATTTTCAGACACCAGCCCCAGAGGAGAAGGATAAGCCAGAATCGGTGCCG------------GAGGAGCCAGAAGCCACTGAAAAACCAG------------------ACGAC------------ATGCCGTCTGACAGTGATCTTGAGAAGGAACTGGATGAGTCATCGAGTGCGAAGGAAGAGCAAACTTCCTCCAGTGGAGTTGT-------GTCGCGAGTTTGTGTATTGTTAACCTTTTTTCTTCTT
s caeRem4.Crem_Contig24  267842 326 +  1162296 TTGCTAGTCTAAACACTATCTATCTATTTCTAACTTTTCCTCATGCGAT--------AACACACGCTTTgtaaaaagtataaaaactgtaaagtaact-gaaattaatgattttcagactgagAAACCAAAGGAAGCA---GAgccag---aagaagag------------gaggagccAGCAACCACTATCAAAACTGTGGAGAATATCTCTGACATCGAACCAGTCAAGGAAATGCCTTCAGATGATGAACTTGAGAAGGAATTGGATGATGCTGCCAAACC---CAAAGGACAAACTTCTTCCAGCTCATTGGTTTATAGAGTGGCCTCCGTTTTGGTGGctgttattttctt-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    71099 253 -   141934 -----AGTCTGT-TAGC---------CAATTTAGTTTTATTTGTAAAATTGAAGT---------TCTTTGAAAGCAgtaaagaa---------taatt------------tttgcaGGAACAAGAACCAAAAATAGAA---GACTCAGTTCCGGAAGAGCGTACTTCTACAGAGGATTCCGAACC----------------------------TGCAACGAC-----TGAAACTATGTTTACTGATGAAGAACTGGAAAAAGCATTAGATGACTCATCGAAAAC---TGATGCGAAAACTTC------------------------TGCAAGTGTTCagatttttaatattttctcatctt
i caeSp111.Scaffold514  I 6 I 232
s caePb3.Scfld02_62      372945 301 -   783054 -----AGTCTGTACAgcttctcctttctttctaACTCTCTTCATACGCTTATACTATAAcactatcttttttttcaatctcaaa---------TATCTATggatttgtgattttcaggAGCAAACGCCAAAACCGGAAAAGAAACCTGCCCCAGAAGAGCCAACTCGTGCTGAGGAGCCAGAGACCACTA-------------------CTGTTGCAACGAC--------AACATTGCCATCtgatgaagaattggaaaagtcCTTAGACGATTCTGTGAAAAC---TGATGAGCAAACCTCCTCCAGC---------------AATGCCGTTTTCCCAGTTATTactattttgcttttt-
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                16693 893 + 21540570 I

a score=-274.000000
s ce10.chrX             1116442 3 + 17718866 GTT-
s caeRem4.Crem_Contig24  268168 3 +  1162296 -ttt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      373246 3 -   783054 gtt-
i caePb3.Scfld02_62     C 0 I 28
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                16693 893 + 21540570 I
e caeSp111.Scaffold514    71352 232 -   141934 I

a score=-2088.000000
s ce10.chrX             1116445 681 + 17718866  
s caeRem4.Crem_Contig24  268171 529 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      373249  28 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                16693 893 + 21540570 I
e caeSp111.Scaffold514    71352 232 -   141934 I

a score=-8394.000000
s ce10.chrX             1117126 108 + 17718866 TTTTCATATTTTTCCTCGTATTTTTCTCCTTTTTGGCGATCTTCAAACATACTCTGCTAAAATATTATATTATGAA--------------------ATTTATTGGAAGAAAAAATAATACATTTATCA----
s caeRem4.Crem_Contig24  268700  43 +  1162296 -----AGGGAAGTTCAAGTA--------------GAC-ATAAAAAAGCATAGGAT-----------------------------------------TCTGGTTG----------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      373277 128 -   783054 --tctttataactttttgtaatttttttttgtttgtc-atAACTAAACTTGGTATTATCATCCGTtaaattattcagaattttattttgaatgaaattttattgtgaTACACAACAA-GTGTAAAACAAAGA
i caePb3.Scfld02_62     I 28 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                16693 893 + 21540570 I
e caeSp111.Scaffold514    71352 232 -   141934 I

a score=-16104.000000
s ce10.chrX             1117234 123 + 17718866 GACCAGTATTTGACAATGTGAC--GGAAAGCATT-AGAATTAATATAATATGAATTATTATTTCGAGATGCTCAAAATATTACACCAG------AATTCAAATATTA----------------------CTCCTGGT----------------CCCTTACGCACA-ATAA---A-
s caeRem4.Crem_Contig24  268743  71 +  1162296 -------------------------------------------------GCACGGTGTT-----TA----CCCAAATCTGT--ATCATCGGGTACTTTC--A-TTCA----------------------TAGTTGAC----------------CCCTCTCATGCACACAA---AA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    71584 111 -   141934 GACCAGTACaaaaaaaTGTGGCAGGGGAGCAAT--AAATCAGAAATATTACAAAACGTT-----GA-------ATgttagt--ttcat------ttttaaaa-acca----------------------aaactgaT----------------CCCCTCTAAGCA--CAATTGA-
i caeSp111.Scaffold514  I 232 C 0
s caePb3.Scfld02_62      373405 155 -   783054 AACCTGTATTAAACAAAGTGgc--gagaagaattgaaaaaagaaagcattCAGATTATT-----GAGATTCTCAGGTTAATA-accat------atttcaaa-agaacGGGTGCAACAAGAATTCAGAGAAAGTGATGATTGGACTTTGTTAGCCCCTTTGATTA-GCAA---A-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                16693 893 + 21540570 I

a score=99426.000000
s ce10.chrX             1117357 185 + 17718866 ACTCGTCTCCAGCAAACCGTGCCTGGGAC---GTGCCAACGTGTTGCTGATAACGTTTGTACCGAACTTGGTCAGCGATTGACATTGTGCAGTGGAATGCCACACGGCAGACGTAGACGGAGACTGAGAGGAATGTTAGTGAGAGGCACCAGCCGACAATGCACAATTGGAACGTGGCTGGAAATAAA---------
s cb4.chrX                17586 191 + 21540570 ACTCGTCGCCAGCGAAACGTGTTTGCGAA---GTGCCAGTGTGCTTCTGATAACGATTGTATCGAACTTGATCAGCAATGGACATTGTGCAGTGGAATGCCACACGACAAACGTAGACAGACACCGATAAAAGAACGAGTGATATGCACCAACCAATAATACACACTTGGAACGtggctgaaa---aatgtattCCA
i cb4.chrX              I 893 C 0
s caeRem4.Crem_Contig24  268814 188 +  1162296 ACTCGTCACCTGCGAAACGTGGTTGGGAAGACGTATTAACGTGTTGCTGATAACGTTTGTACCGAACTTGATCAGCAATCGACATTGTGCAATGGAATGCCACACGGCAGACGTAGACGGACACAGCGAGGAAAGCCAAGGAGATGCACCAGCCGACGATGCACAGTTGGAAGGTTGCTGAA---------ATTAGA
i caeRem4.Crem_Contig24 C 0 I 893
s caeSp111.Scaffold514    71695 180 -   141934 ATTCATCTCCTGCAAATCGTGATTGAGAT---GTACCAGTAGTACGCTGATAACGTTTGTATCGGAGTTGGTCAGCAATTGACATGGTGCAATGAAAAGCCACACGACAAACGTAGACGGAAAGTGATAGAAATGTTAAAGAAATGCACCAGCCAATGATGCACAGTTGAAAGGTAGCTGCAA--------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      373560 183 -   783054 ACTCGTCTCCTGCAAATCGTGACTGTGGA---GTACCAATTTGCTTCTGATAACGTTTGTATCTAACTTGGTCAGCAACCGACATTGTGCAGTGGAAGGCCACACGGCAGACGTAGACAGATACGGACAGGAATGCCAATGAAACGCACCAACCGATAAGACACAGTTGGAAGGtagctgaaa---aat--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-2764.000000
s ce10.chrX             1117542 21 + 17718866 GTTTACTTGAATACTAGAAA--A
s cb4.chrX                17777 21 + 21540570 -TTTGACTCTAttgctcaaaaa-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    71875 19 -   141934 -TTAGATTGTTTATTTCAAA---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      373743 18 -   783054 gttgagttATGTACAT--AA---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=-1416.000000
s ce10.chrX             1117563 34 + 17718866 ATTTACCATGTGAAATGGAACTGCTTTGCATTCT--
s caeSp111.Scaffold514    71894 22 -   141934 --GTGTCGTAT------------AGTTTagtacttt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      373761 22 -   783054 --CTATCATAT----------CGCGCTGAGTTCT--
i caePb3.Scfld02_62     C 0 I 236
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17798  0 + 21540570 C
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=393.000000
s ce10.chrX             1117597 7 + 17718866 TCTTTTT
s caeSp111.Scaffold514    71916 7 -   141934 ttttctt
i caeSp111.Scaffold514  C 0 I 102
e caePb3.Scfld02_62      373783 236 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17798 0 + 21540570 C
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=0.000000
s ce10.chrX             1117604 169 + 17718866 TATCAAATAAAGTGTTGCCTTTGCACTTCATTTAAAAAATTTAGGTTATGGTGCATCGATAAGTCCAGTGTTTGAGCTCGATTGAAAATAATTGAAATTTAGTGATTTACTTGTGCTCCTAAACTCCTAAACGTTGACAGTGTATTTCTGCTTGCTTTGGGTTTACGAA
e caePb3.Scfld02_62      373783 236 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17798   0 + 21540570 C
e caeSp111.Scaffold514    71923 102 -   141934 I
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=-135.000000
s ce10.chrX             1117773 115 + 17718866 AAACTGGCCAATTGACATGATACTTCTTATTTATTTTATAATGATTTAGTGGGAAATTACTTCTTGATTTTTTGATATTTTTATGTGCGAATCAAAATTTAGATTTAAGTACAGT
s caeSp111.Scaffold514    72025  77 -   141934 aaatctaCAAATTAACA-------TCTTTTTGAT----------CTTAGTAGAGAA--------TGGTTTTGT-ATCCTTTTATGTAC--------ATT----TTTaccaattat
i caeSp111.Scaffold514  I 102 C 0
e caePb3.Scfld02_62      373783 236 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17798   0 + 21540570 C
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=203.000000
s ce10.chrX             1117888 11 + 17718866 TTCCGATCAAG
s caeSp111.Scaffold514    72102  9 -   141934 ttttg--aaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      374019 11 -   783054 TTCCgcaaaaa
i caePb3.Scfld02_62     I 236 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17798  0 + 21540570 C
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=-989.000000
s ce10.chrX             1117899 12 + 17718866 -TTTTCAACAATC--
s cb4.chrX                17798 12 + 21540570 -ctttcaaaactc--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    72111 13 -   141934 atcagtaaaaaaa--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      374030 15 -   783054 ctttgtgaaaaaatc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeRem4.Crem_Contig24  269002 893 +  1162296 I

a score=66905.000000
s ce10.chrX             1117911 162 + 17718866 ACTTACCATCTACCAAATCCAGCTTGAAATGTGTAGAAAC---AAGTTGTGCACCCATTTTTGTGCACTGCAGGAAAAACATGAAGAGCTCACTTTCCGGCTTGATAAGCGCATAGGTAAAAGCCGTCAAGAAGACGGCACTGACAAATGTTTCAAGAGTCTGAA
s cb4.chrX                17810 158 + 21540570 ----actGTCAACAAGATCAAACTTGAAATGGGCCGAAAC---AAGTTGAGCTGCCATTCTAGTGCATTGGAGAAACAGCATGAACAAATCGCTCTCTGGTTTCACAATAGCATAAGTGAATGCAGCCAGCATCAGGGCGCTGACGAATGTCTCGAGGGTCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  269895 165 +  1162296 ACTCACCATCAACAAgatcaaatttgatatttggTGACACAGAAACTTGAGCAGCCATCTTAGTGCATTGAAGGAAAAACATGAACATGTCGCTTTCAGGTTTCACAATAGCGTAGGTGAACGCGCCCAGCAAGATCAAGCTGACAAACGTCTccaatgtctgaa
i caeRem4.Crem_Contig24 I 893 C 0
s caeSp111.Scaffold514    72124 162 -   141934 CATTACCATCGACATAATCGAGTTTGGAATGTGGTGATAC---CAACTGTCCCGCCATCTTTGTGCATTGtaaaaagaagttgaacTGATTACTGTCTGTTTTCAAGATTGCATAGGTAAATAGTCCAAGACAAATGGCGGTGACAAATGTTTCAagtgtctgaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      374045 162 -   783054 tCTCACCATCAACATAATCGAACTTGAAATGGGGAGAAAC---CAATTGTCCTGCCATTTTTGTACATTgtaagaagaagttgaattgaCTGCTGTCAGTTTTGACAATAGCGTAGGTGAACAGTGACAAAGTGATAGCACTGACAAACATCTCCAGTGtctgaa
i caePb3.Scfld02_62     C 0 I 8
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=1092.000000
s ce10.chrX             1118073 2 + 17718866 AA
s cb4.chrX                17968 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  270060 2 +  1162296 aa
i caeRem4.Crem_Contig24 C 0 I 31
s caeSp111.Scaffold514    72286 2 -   141934 aa
i caeSp111.Scaffold514  C 0 I 35
e caePb3.Scfld02_62      374207 8 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-750.000000
s ce10.chrX             1118075 37 + 17718866 CGGAAATTGGTTGCAGAATTGCTTTTAAAATACATTG
s cb4.chrX                17970 11 + 21540570 T--------------------------ATACACATTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      374207  8 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72288 35 -   141934 I
e caeRem4.Crem_Contig24  270062 31 +  1162296 I

a score=0.000000
s ce10.chrX             1118112 320 + 17718866 ACGTATGAATGTTCGTAACCCCTCGTGGGAACGATTTGAGCCGCTTTcacgtggcgtcaggctgtcccattacgaattaatctacaaaacatgcgggaaattttccccaaaaatgagaagtttgcgtctacattccagaaattctcgtagatctacgtagatcaaaccgaaatgggatagcctgacaccacgtgTGATTTATTATTAATCCACGAAATAAAATTTTGAGCCACTAAAGACAAGACCAGCAGAAAATATTTTCAAAGTGATCCGAGTACGCGACTTGTACAAGTTTTATGAAAACAATTTTGAGTCGCTAC
e caePb3.Scfld02_62      374207   8 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                17981   0 + 21540570 C
e caeSp111.Scaffold514    72288  35 -   141934 I
e caeRem4.Crem_Contig24  270062  31 +  1162296 I

a score=100.000000
s ce10.chrX             1118432 1 + 17718866 G
s cb4.chrX                17981 1 + 21540570 G
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      374207 8 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72288 35 -   141934 I
e caeRem4.Crem_Contig24  270062 31 +  1162296 I

a score=-1214.000000
s ce10.chrX             1118433 21 + 17718866 ---AACACTTTTAATTTCTTCAAA---
s cb4.chrX                17982 21 + 21540570 ---AACACCTAAAGGTAAATTGAA---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      374215 27 -   783054 aataatttccatGACTTCATCCGGCAA
i caePb3.Scfld02_62     I 8 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72288 35 -   141934 I
e caeRem4.Crem_Contig24  270062 31 +  1162296 I

a score=1692.000000
s ce10.chrX             1118454 3 + 17718866 AAC
s cb4.chrX                18003 3 + 21540570 AAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  270093 3 +  1162296 AAC
i caeRem4.Crem_Contig24 I 31 C 0
s caePb3.Scfld02_62      374242 3 -   783054 AAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72288 35 -   141934 I

a score=56448.000000
s ce10.chrX             1118457 125 + 17718866 TCACTCTTAAAACAACGAATGGAATGCAGAAAAATGGCTGCTGGCGGATGATACCAATGTGCATCATGAGACTTGTCAGCACAATTCCACCCATTACTGCCGAGACGTATAGGATAAACTGAAAA
s cb4.chrX                18006 125 + 21540570 CAACTCTCAAAACCACAAATGGTATGCAAAGAAACGGTTGTTGAGCACCAATTCCAATGTGCATCAGAATGCATGTAAAGACAATTATCGCCATTGCCCCAGACAGATAGATtacaaactgaaaa
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig24  270096 125 +  1162296 TCACTCTCAAAACGACAAATGGAATGCAGAGGAATGGTTGTTGGATGCTGATTCCAACGTGCATCAGAATACTGGTCAGGACAATGACACCCATGCCACCAGCGAGGTAAAGCACAAACTGAAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    72323 125 -   141934 TTACCCTCAATACAACGAATGGTATGCATAAGAACGGTTGTTGTATGGTGATTCCAACATGCATCAATATACTAGTGAAGACCATTACACCCAACGCAACACAGAGATAGACGATGAACTGCAAA
i caeSp111.Scaffold514  I 35 C 0
s caePb3.Scfld02_62      374245 125 -   783054 GTACTCTAAGAACCACGAATGGGATGCAAAAGAATGGTTGTTGAATGGCAATACCGATGTGCATCAGAATACTTGTGAGTGCTACTGCAGCCATGGCCACGGAGAGCCAGAtgacaaactgaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-6235.000000
s ce10.chrX             1118582 45 + 17718866 CATTTACGGGTTAAAATTTCAC--------ATTGGAATCA--AAATAACTATGCT
s caeRem4.Crem_Contig24  270221 34 +  1162296 ---------AAGAGAATTTCGTTCAATTCAATCTGAGGAG------------GCT
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold514    72448 40 -   141934 ------AATTATAGAA--TTATT-------GTTCGAGTAAATGAGGCATATTGCT
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      374370 33 -   783054 ----tgagattttgaactTTGCT-------GCTTGGGTAG-----------TGTT
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18131 39 + 21540570 I

a score=61454.000000
s ce10.chrX             1118627 108 + 17718866 TTACCTTGTTTCTGATCCCATTGTAATACATAAAGGCATTGAAAGCAATCACAATAATGGCAAGGGCACAGTAGATGAAGGAAATACAATGGGCAGATGAGGACTCCT
s cb4.chrX                18170 108 + 21540570 TAACCGAATTCCTGACTCCGTTGTAGTACATAACAACATTGAATGCAATGACTATGATGGCAAGAGCGCAGTAAATGAATGAAATGCAGTGTGCCGAAGATGAgtcct
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig24  270259 108 +  1162296 CAACCGTGTTTTTGATTCCATGATAGTACATGAAAGCAGTGAATGCAATGACAATGATGGCGAGGGACAAGTAGATGAAGGATACACAGTGAGCAGCAGATGagtcct
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold514    72489 108 -   141934 TCACCAAGTTTCTGATTCCATTATAATACATAAACGCATTGAACGCTATGATAATGACAGCAAGGGCGCAGTAAATAAACGAAATGCAGTGTGCAGATGACGAATCCT
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      374404 108 -   783054 TTACAGAGTTTCTGATTCCATTATAGTACATGAACGCATCGAAGGCGATGACAATGATGGCAAGTGCACAGTAGATCAAGGAAATGCAATGTGCAGATGATGATTCCT
i caePb3.Scfld02_62     I 1 I 1012
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-8683.000000
s ce10.chrX             1118735 59 + 17718866 AAATTTCTGATTATTAAGTTGAAAGTTCAATCAGGGAATTTGCTCCGAACTTTGAATAC
s cb4.chrX                18278 32 + 21540570 aaaaattaaaatgt---------attCTTATTCAATTG--------GCT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  270367 58 +  1162296 gaaaattgaaaaactaggTTAAAAACCTTATTAAGGTGCTAGA-CCGCCATTTTAACAC
i caeRem4.Crem_Contig24 C 0 I 193
s caeSp111.Scaffold514    72597 30 -   141934 GGAAGAAATATTGTTTGCTGCACaatttga-----------------------------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=1396.000000
s ce10.chrX             1118794 12 + 17718866 CACAAATTTATA
s cb4.chrX                18310  9 + 21540570 ---AAATCTATA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    72627 11 -   141934 -acaaattttta
i caeSp111.Scaffold514  C 0 I 87
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeRem4.Crem_Contig24  270425 193 +  1162296 I

a score=43.000000
s ce10.chrX             1118806 9 + 17718866 ACCAGATCA
s cb4.chrX                18319 9 + 21540570 TTCGGTTTA
i cb4.chrX              C 0 I 37
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72638 87 -   141934 I
e caeRem4.Crem_Contig24  270425 193 +  1162296 I

a score=0.000000
s ce10.chrX             1118815 53 + 17718866 ACATCATATGAGTGACCTTCAAAGGGAAGGGAAAAAATGACATAAAATTGATT
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18328 37 + 21540570 I
e caeSp111.Scaffold514    72638 87 -   141934 I
e caeRem4.Crem_Contig24  270425 193 +  1162296 I

a score=407.000000
s ce10.chrX             1118868 83 + 17718866 AATTCTCTTGCGGTTTTAATTATAGGCGCGTCGGCCTTTTATGTACCCAAATTAACAAATAAGAGCAGATGGGTAGAAAA-----AGG
s cb4.chrX                18365 78 + 21540570 GATCAGCTAGCTGTTTGAATTATCA----------CTCGAATATGCTCTGACTACAAAATGAAGATCGAACGGTAAAAAGGTATTACG
i cb4.chrX              I 37 C 0
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    72638 87 -   141934 I
e caeRem4.Crem_Contig24  270425 193 +  1162296 I

a score=-4231.000000
s ce10.chrX             1118951 88 + 17718866 ----AAACATCAATTTTTTATGTCTTCTCTTGGTATTCGGCAGAAAATTTGTAAGAAACCAACATGCAAAGTAGCAAAGTAACGGAAAAAAC-
s cb4.chrX                18443 65 + 21540570 GTTCACTGattagtttttgaatcttt-----gattGTTGCCG------TTACAGGCAGCTgaatt-----------------cgggaaaaaag
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514    72725 44 -   141934 ----AATCGCCaggtttcaatttttt-------------------------------cctaaaattc--------------ACAGGAAACAAT
i caeSp111.Scaffold514  I 87 C 0
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeRem4.Crem_Contig24  270425 193 +  1162296 I

a score=-16975.000000
s ce10.chrX             1119039 128 + 17718866 ---CGACTCCC--TATTTCTA-----TGATAGAAAAAAATTTCAACATTTTT-----ACGCGGAATCTATCGAGTTTTCGTTCCGATTATTCATTTGAAGTT-ATCCGTTTTTTTTTTCAAAAATCA----------------CTACCTCTTTGCCA-GAT
s cb4.chrX                18509 138 + 21540570 ---gatttccgaatattatta----tTGATACGTAACAA--CTGTGTTTCTG-----ACGGGTTCTTTGTGGAGTTCTTTCTGAGATGAttaaaaaattacgaaatcgTTTact-----taaaacaaaaaatctttcTATTGGTTACCTTTCCTTTT----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  270618 128 +  1162296 ---CTATTCCcattgttttta--atttcacaAGAAACCATGCTAGATTTTTGTCAGAATGGGTCATCTGT-------TTTCCTAGGTTACCATTCTAGTCCTAAATCAGCTA-------GAAATCCAGAAAAC----------TTACTTCAGCTCCT----
i caeRem4.Crem_Contig24 I 193 C 0
s caeSp111.Scaffold514    72769 103 -   141934 CGAgatttcacaattttcatAGTGTTTCA------------Ttgtatttctc-----aaaa-----ctgt-------------AGGCCTCCAGACTAATCTG---CCGcttt-------aaaaactattgttT----------TTACCTACCTTTTCC---
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      374512 1012 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=60174.000000
s ce10.chrX             1119167 230 + 17718866 CCCCGCTGACTCTTGGCAGATGTTCCTTGTTCTGGCTCTCTTCTCATCGGCGCCGACGACGGATTGTACTCCTGGCCGCTATTGTTTTTCGGCTCAAATCCTCCGTAGTAGTCATCTCTCTG----------------AAAT--TGAATT---------AT------CAAT---------GTTTGCAAGACA--------TCGTTTGAAA-CT---ACCTGTGAATATGTGGAGTATGTGTAGTAGTCTGCAGTGAGGCAAGGTGCTGATGGTCTTGTCATTTT
s cb4.chrX                18647 224 + 21540570 CCTCGTTGATTATGGGAGACTG---TCTTTGTTGGCTCTCTTCGCATAGGCGCAGATGTCCGATTATAATCTTGtgaattgtcattttttggttcGTATCCACCATAATAATCGTCTCTCTg----------------aata--aaaatg---------att-----taaC---------TTCTCCA----A--------AAGCCCGTAA-ATCCTACTTGAGTGTAAGTGGAATATGTGTAATAATCAGCAGTTAGGCATGGAGCAGTAGGTCTCGTCAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  270746 241 +  1162296 CCTCTCTGAGTCTTGGTAGCCG---CCTTCTCCGGTTCTCTCCTCATTGGCACTGACACGTGATTGTAGTCGTG---ATGCTCATTTTTGGGTTCATATCCGCCGTAGAAGTCgtctctctg----------------aaaa--aaaatgatagtaAGAATT-----TGACAAGAACGGTTTCTGCACtgca--------aattacaaaa-at--taccGGTGAATAAGTGGAGTATGTGTAGTAGTCTGCAGTGAGGCATGGCGCAGTTGGTCTGGTcat---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    72872 229 -   141934 cctctttgatttttg-tcgACG---TTGTATTTGGTTTGCGTCTCAGTGGTCCTGACGTGTTGTTATACTTGTC---TCCCTCAGTTTTTGGCTCGAATCCACCGTAGTAGTCGTCTCTCTG----------------AATATCACAACC---------ATT-----TGGC---------ATTTTGAATGTA-------TCAGTTTAAGATCT--TACCTGTGTATACGTCGAGTAAGTGTAGTAATCGGCGGTGAGACATGGTGCGGTTGGCCTTGTCATTct
i caeSp111.Scaffold514  C 0 I 1002
s caePb3.Scfld02_62      375524 254 -   783054 CTTCcctgatttttgttcaacG---CCTTTTCCGGCTCTCTTCTCATCGGTGCAGATGTGTGGTTGTACTCTCG---TCCTTCATTTTTCGGTTCGAATCCTCCATAATAGTCGTCCCTCTGGAAATGTTGAAATgctgatttcgaaatt---------tttttttcttgt---------tttttaaaaacaatcgtgttcaaatcaaaa-ct--aacTTG---ATAAGTGGAATATGTGTAGTAATCTGCTGTCAAGCATGGAGCTGTTGGTCTTGTCATGCT
i caePb3.Scfld02_62     I 1012 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I

a score=-473.000000
s ce10.chrX             1119397 25 + 17718866 TGGGTCTGAAAATGAAGGTTAGAAA-
s cb4.chrX                18871 22 + 21540570 ---GTCTGAAATAGAAACGTtggaa-
i cb4.chrX              C 0 I 1617
s caeRem4.Crem_Contig24  270987 22 +  1162296 ---cctgaaaaatgaaatgaagaaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      375778 21 -   783054 -----CTGAAAagataatgatgatga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=836.000000
s ce10.chrX             1119422 29 + 17718866 TGAA--GGGGTACAGAAA--AAAGAAGAAA--GAA
s caeRem4.Crem_Contig24  271009 32 +  1162296 -aaactggattAATAAAATGCGAGATGAAA--GAA
i caeRem4.Crem_Contig24 C 0 I 214
s caePb3.Scfld02_62      375799 32 -   783054 -aaa--ggattacaaaaattttagacaagattgaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=523.000000
s ce10.chrX             1119451 8 + 17718866 AAGAAAAA
s caePb3.Scfld02_62      375831 8 -   783054 tagaaaaa
i caePb3.Scfld02_62     C 0 I 155
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I
e caeRem4.Crem_Contig24  271041 214 +  1162296 I

a score=0.000000
s ce10.chrX             1119459 909 + 17718866  
e caePb3.Scfld02_62      375839 155 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I
e caeRem4.Crem_Contig24  271041 214 +  1162296 I

a score=393.000000
s ce10.chrX             1120368 28 + 17718866 CCCCGTC----TCGTCGAGTGTGGGAGAAGAA
s caeRem4.Crem_Contig24  271255 28 +  1162296 CCCCGTCGTCGTCATCTATCGTGGGATA----
i caeRem4.Crem_Contig24 I 214 C 0
e caePb3.Scfld02_62      375839 155 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=5093.000000
s ce10.chrX             1120396 112 + 17718866 GGATACTCAATGACAATAAACGGCGGGAAA--TGAAGGAGGAAGACGACGAGCAGTAGA-------------GAGACAGACAGAGAGAGATGGAGAGGTTGACCTCTCCTT--------GCGAGTGACC-------AAGCGG
s caeRem4.Crem_Contig24  271283 104 +  1162296 ---CTCTCAATGACAATAAACGAATGGAAA--TGAAGGAGAGGGG---------------------------GAGAGAAGGAAAGGC------TCGGGTTGACCTCTCCATCGCGCAGTGCGGGTGGTCAAGACGAAGACGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      375994 131 -   783054 GAATACCCGATGACAATAAATGAAGGAAGGGCCGAAGGAAAGAGGAGACGAGCATTTGACCTCTCCTtccaagagagagagaaaggctGACCGTCGGGGCGTCCATTTCTTGGACCCGAGTGGGT-----------AAGCGG
i caePb3.Scfld02_62     I 155 I 39
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=-25.000000
s ce10.chrX             1120508 27 + 17718866 GTCTCTAGGGCCGATCGATTCTCT-GGA
s caeRem4.Crem_Contig24  271387 17 +  1162296 GT-----------ATTGATTTCCTCGGA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      376125 39 -   783054 I
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=10287.000000
s ce10.chrX             1120535 148 + 17718866 -------------------CCA--------------GAAAGATGAC-----AGGGGAGAAGAC--ATGGGCCAAACGACAATTGAATAATTGAGTT-----------------------------------GATGAAAGCGAGAGGAGGGACATGACGCACATTTGTTCTTCGGCTCAGTGAGC---------------ATGATTGAATAATGATAGATCTCATTTATTTTTCATTTT
s caeRem4.Crem_Contig24  271404 225 +  1162296 CCAAAGGGAGGAAGAGAGACCCGTGCGGGGAGGGAAGAAGGATgaccagaaaaagaagagagc--aaTGGC-AAACGACAATTAAATAATTGAGTTGGGA-GGAGGTTGGATCGTTTAACGGAGCGGACATGACGGAGAGAGTGGGAGAGACAAAACG---ATTT---GTTCGGCTCAGTGAACTGAGGACAAAT-GGGATGATTGAATAATGAT--ATGTCATCAATATTTCATTCT
i caeRem4.Crem_Contig24 C 0 I 1313
s caePb3.Scfld02_62      376164 183 -   783054 -------------------CCC--------------GAGAGATGGCCAGAAAAACGGGGACACAGAATGGCAAAACGACAATTAAATAATTGAGTTGGGAGGGAGGGTGGCCC---------------CCCGACACACACGCGGAAAGAGACGTGCCG---GTTTG--GCTCGGTTCAATGAACggaaaacaaatagaaatgATTGAATAATGAT--ATgtcataaatttttcatttg
i caePb3.Scfld02_62     I 39 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=251.000000
s ce10.chrX             1120683 4 + 17718866 GACA
s caePb3.Scfld02_62      376347 4 -   783054 gata
i caePb3.Scfld02_62     C 0 I 735
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I
e caeRem4.Crem_Contig24  271629 1313 +  1162296 I

a score=0.000000
s ce10.chrX             1120687 1600 + 17718866  
e caePb3.Scfld02_62      376351  735 -   783054 I
e caeJap4.Scaffold17966   17831  342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I
e caeRem4.Crem_Contig24  271629 1313 +  1162296 I

a score=384.000000
s ce10.chrX             1122287 17 + 17718866 TTCGGACTCCTCTGCCA
s caePb3.Scfld02_62      377086 17 -   783054 TCCCGTCTTCCatccca
i caePb3.Scfld02_62     I 735 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I
e caeRem4.Crem_Contig24  271629 1313 +  1162296 I

a score=5097.000000
s ce10.chrX             1122304 304 + 17718866 TCTTCCTTCCCCCAGTTT--CTTCAATTCTATCAAGTAAAAGATAGCCATCTTCCATCCTTTTGCCCGTTGTTTCATCTTCTCAAATACTACG-----CGCCAAAACCACGAGTCAGTCATACAAAGGGAAAGATTTATTGGTGTTATTTTTGAAAAAGGGGAAT-----GAGAGATATGAAGATGTGAAAATGTAAAGAGCTATGTGTGTTGTGGTGGGGAAGAAAACAATTGAAACAATAGATTGCCTTCTGTTTATGGTGCATCGAAGAGGTTTTTGTGATTTTCTGAAAAATCTACATGGCAAGAAGAGGAG
s caeRem4.Crem_Contig24  272942 231 +  1162296 tcttctttccccccattttccttcttttctatcAAGTGAAAGATAGCCATCTT----------Ctcttttgtt---tctcttcaatttcaatgTTATACGCCGAAACCACGAGTCAATATTACAAA-GAAGAGATTTATTGG--------------gagaaaaattcagagaaaaat----tgatggaagaatg---------------------------------actagtaaaacaaaagg----------------aaaaattgaaaaaggcttaa----catttggaaaaaacacagggaatgaaaTGCCA
i caeRem4.Crem_Contig24 I 1313 I 5
s caePb3.Scfld02_62      377103 199 -   783054 tcttc----------ttctcttctttttctatcaaatgaAAGATAACCATCTTTC-Ccatctcttcttttgtt---tctcttcgAATTCAATG-----CGCCAAAACCACGAGTCAGTATTACGA------AGATTTat------------------ggcaaaat-----gaaaaat----cgaagaaaaccT-----------------------------------CCGAGAAAACACAGAGTTAc------------aaacatt---attttctttg----tttttgagaggaaaatgaaga-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   17831 342 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    73101 1002 -   141934 I

a score=41687.000000
s ce10.chrX             1122608 79 + 17718866 ATTAATCAATTGGAAAAACTGCGATTCGAGATCTCGCAAGCTTCCAAATTTGACCATCAGCAGTGTAGTGTACCTAAAA
s caeRem4.Crem_Contig24  273178 79 +  1162296 ATTAGTCGAGTGGGAAGACTGCAATCTTGGATCTTgccaatttccaaatttgacCATCGGCGGTATAATGAACCTaaaa
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold514    74103 79 -   141934 ATCAATCTATTGGGAAAACGGAAATACGAGACCGAGCAAGCTTCCATATTTGACCATCAGCGGTAtaatgaatctgaaa
i caeSp111.Scaffold514  I 1002 C 0
s caePb3.Scfld02_62      377302 78 -   783054 attagTCGATGGGAAAAACAGCGATTCGGGATCTGGCTAGCTTCCATATTTGACCATCCGCAGTGTAATGAACCTGAA-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   18173 79 -   140921 attaatCAGTTGGAACAATTGATATTCTTGATTTTGCCAATTTCCATATTTGTCCATCTGCCGTGTAATGaacctaaaa
i caeJap4.Scaffold17966 I 342 C 0
e cb4.chrX                18893 1617 + 21540570 I

a score=-26831.000000
s ce10.chrX             1122687 178 + 17718866 AAAATTCCACATTTGGTGGGAAAACGCTTTTAGGAAAACTTGGTAAAATTAATTTTTCACGATTGAAATATACTAAATA---TTTTAAAAAATTCTAAAAACGTATAAAATTAGT--ACTGT-TTCTGACAATGA-----AAAACTGTATATTT-------------CAGATTTTGCTTCAGTGAGCAAACTAAATTCAAAC
s caeRem4.Crem_Contig24  273257  47 +  1162296 aaaaT----------GTGGG------------------------------------------------------------------GAGTAATACTAAAATAAT----------------------------------------------ACTA-------------AAAGGTGCGGTGTGA--------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      377380  37 -   783054 -----------------------------------------------------------------------------------------TAATTTTCCaatcat---------------------------------------------------------------caaattttattGTGGTTAAGAA-------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   18252 141 -   140921 ------------------------------------------------ttttttattcagcttttttttttgttatataaagtttaaaatatttgttaaaacttgaaaagtgAGCCAATTGGACTGCAACCATGCCCCCTAAGATTTTCTGCTAAATCCttaatgggcggggcttcgcGTGATCCAAGC-------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74182   0 -   141934 C

a score=57528.000000
s ce10.chrX             1122865 171 + 17718866 TCTCTAAACATATCGTTCTCTAAACCAAAAAGCCTCAGGTACTTACCCTCTCCAATTCATCATTAGAAAAATAATCCCCTGAATCATCCGATTGGAAGTTCTCGATCACAAGCGTGCCATTTTCATACATGTGCTCACGGCCGTCTCCGGACTTTTTTGCGTTCTGAATTT
s caeRem4.Crem_Contig24  273304 131 +  1162296 ----------------------------------------ACTGACCCGCTCCAACTCGTCATTCGAGAAATAATCCCCAGAATCAGACGATTGGAAGTTTTTAATGACAAGCGTCCCATTCTCATTCATGTGCTCACGACCGTCGCCcgctttttttgagttctgaaata
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    74182 165 -   141934 acattaaacattttg------aatagagaaaatatcCTAAAATCACCCTTTCTAGTTCGTCATTCGAGAAATAATCACCAGAATCGGAAAACTGGAAGTTTTCAATAACAAGTGTTCCGTTTTCATTAATGTGTTCGCGTCCATCACCAGAtttttttaggttctgaaatt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      377417 136 -   783054 ---TTAAAC-----------------------------AAACTAACCCTCTCTAACTCgtcattagaaaaataatcTCCCGAATCGGAcgattggaaattttgaatgacaAGCGTCCCATTCTCATTCATATGCTCTCTGCCGTCTCccgacttttttgaattctgaa---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   18393 160 -   140921 ATTGGAAacattata-----------aaaaaataggTTTCACTCACCCTTTCTAGCTCATCGTTCGAAAAATAGTCTCCAGAGTCAGATCTTTTGATATCCGAAATAATCAGCGTTCCGTTTTTATTCATTTGTTCTCTTCCATCCCCAGTAACTTTAGAGTTCTGAAATT
i caeJap4.Scaffold17966 C 0 I 10
e cb4.chrX                18893 1617 + 21540570 I

a score=-742.000000
s ce10.chrX             1123036 2 + 17718866 TT-
s caeRem4.Crem_Contig24  273435 3 +  1162296 att
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    74347 2 -   141934 tt-
i caeSp111.Scaffold514  C 0 I 71
e caePb3.Scfld02_62      377553 0 -   783054 C
e caeJap4.Scaffold17966   18553 10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I

a score=-14129.000000
s ce10.chrX             1123038 332 + 17718866 -TAGGTTGTTAAATTTTTTAAAACTACAATTTTGTTTCAATAAAAATGTTTCCAGTTTTGAAAA--AATTAGATATCGAATAAAACTTTAAAACAATCTACTAAAAATCTTTTACATTAAACGATTTTTTTCCGAATTTGAATTCCCTCGCAAATAAATGACCCATCttaaattttttttttgaatttttttttttCGAATTTCTGATTTTTAATTGCAAAAATACAGGAAAATTTACCGTATTTTCTTTATTAGAGTCGCTTGCTAGTCTATATAGTTTCAGATGTAATTTCAACAAAAACT------ATCTGACTTTTCTTAAATTAGTCGCATTATTT
s caeRem4.Crem_Contig24  273438 105 +  1162296 -tatgtttttaaatttgtt------------------------------------tattgttGAGTGAGTAGAACC------------------------------ATGTATGACACGGAGCTA-------------------------------------------------------------CTGAtttttttAGCCGTACTGAGTTCTAAc----------------------------------------------------------------------gtgatt------------------ttttggtttttc--------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      377553 150 -   783054 aaatgttattattttttttaca--------------------------tattaGACATTGATGA--AATTAGTTTC----------------------------AAACGTTTAAT-TGGATCTATTTT---------------------------------------------------------CTTGCTTTCTTTGAGGAATTTTGATTTGacta---------atcaaaattt------------------------------------------------tgtaatttccaCCAAATATTCGAGGTtctggttcttt--------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18553  10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349  71 -   141934 I

a score=-891.000000
s ce10.chrX             1123370 122 + 17718866 GTCAAATTGAAAAAAAAATTATAGGAATTCACCAAAAGACAAACTAAATATAAAATTTTG-------AAAAATACTAAACCGTCAAGAAATTTACAAAAAAATCGAAAAGGAATATTAAAAAATCACAA
s caeRem4.Crem_Contig24  273543  73 +  1162296 ------------aaacaataatGGGGTCTCAC--------------AGTATAAAAATTAGTTCaattaataatattttatggt-------ttta-----------------aatatgaaaaac------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      377703   0 -   783054 C
e caeJap4.Scaffold17966   18553  10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349  71 -   141934 I

a score=-1353.000000
s ce10.chrX             1123492 24 + 17718866 ------TTTTCTCAAAACAACTTAGATTTG
s caeRem4.Crem_Contig24  273616 14 +  1162296 aCGACTTatgcttg----------------
i caeRem4.Crem_Contig24 C 0 I 7
s caePb3.Scfld02_62      377703 11 -   783054 ------ttttctcaaaa-------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18553 10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349 71 -   141934 I

a score=-205.000000
s ce10.chrX             1123516 25 + 17718866 AAAACATAATTTAAATGTAATGAAA
s caePb3.Scfld02_62      377714 17 -   783054 -------aaccggATAATAATGAA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18553 10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349 71 -   141934 I
e caeRem4.Crem_Contig24  273630  7 +  1162296 I

a score=509.000000
s ce10.chrX             1123541 32 + 17718866 CAATTTTCAAAACTTAACAAAAACACAATTTC
s caeRem4.Crem_Contig24  273637 18 +  1162296 caatttacaaaac--------------atttt
i caeRem4.Crem_Contig24 I 7 C 0
e caePb3.Scfld02_62      377731  0 -   783054 C
e caeJap4.Scaffold17966   18553 10 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349 71 -   141934 I

a score=-2257.000000
s ce10.chrX             1123573 22 + 17718866 TTTAATTGTTCAG----TTCACCTTT
s caeRem4.Crem_Contig24  273655 21 +  1162296 cctaatt-ttcgc----CTTACCGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      377731  8 -   783054 ------------------TTACCGAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   18563 26 -   140921 TTTATTTGTACAGTATTTTTGCATAC
i caeJap4.Scaffold17966 I 10 C 0
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74349 71 -   141934 I

a score=71902.000000
s ce10.chrX             1123595 140 + 17718866 ----GTCACCCATCCATTACAGGTGTCAGACGTTTTCTCATTTTTCTCGCAAGGTCTTATGGTTTCTTCAATTCCATTTCTGACGCGCTTCCATTCTTTTACCTCTCGTCCAATGTCAAGTATTAACGTTTCACCGACCTAAAT
s caeRem4.Crem_Contig24  273676 140 +  1162296 ----GTAATCCAAACATTGCAGAcgtcagtttttttctcatttttcccgcAAGGTCTTATGGTTTCTTCAATTCCATTTCTAACGCGTTTCCATTCTTTTACCTCTCGTCCAATGTCAAGTATTAGCGTTTCACCGACCTGAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    74420 137 -   141934 ----GTCACCCAGACATTACAAGTatca---ctcttttcttttttcccgcACGGTTTGATCgtttcttcaattccattTCTGATGCGCTTCCATTCTTTTACCTCTCGTCCAATGTCAAGAATCAATGTTTCACCAACCTAGAT
i caeSp111.Scaffold514  I 71 C 0
s caePb3.Scfld02_62      377739 137 -   783054 ----GCCATCCAAACACTACAGGTGTca---ctcttctcattcttctcacACGGTTTGATTGTTTCCTCGATCCCATTCCTGATGCGCTTCCACTCTTTTACTTCTCGTCCAATGTCAAGTATTAAGGTTTCGCCGACCTAAAt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   18589 138 -   140921 ATTATCAATCCAAACATTGCAAAGT------GTTTTAACAGATTCACTGCATGGTACAATCTTCTCTTCAACGCCAGACCTGATTCGGGTCCATTCTCTGACGTCTCCACCAATATCCAATATTAACGTTTCTCCGATCTGAAT
i caeJap4.Scaffold17966 C 0 I 1352
e cb4.chrX                18893 1617 + 21540570 I

a score=546.000000
s ce10.chrX             1123735 1 + 17718866 A
s caeRem4.Crem_Contig24  273816 1 +  1162296 a
i caeRem4.Crem_Contig24 C 0 I 1023
s caeSp111.Scaffold514    74557 1 -   141934 A
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      377876 1 -   783054 a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I

a score=738.000000
s ce10.chrX             1123736 21 + 17718866 T----ATGTTCTTCTATATCTGATT
s caeSp111.Scaffold514    74558 20 -   141934 C-----CACTCttttattcataatt
i caeSp111.Scaffold514  C 0 I 676
s caePb3.Scfld02_62      377877 25 -   783054 tccaaacatttttttgtttattatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeRem4.Crem_Contig24  273817 1023 +  1162296 I

a score=201.000000
s ce10.chrX             1123757 22 + 17718866 CGGTGATTCAGGG-GTTTGCAAA
s caePb3.Scfld02_62      377902 19 -   783054 c----ATTCAGATCGTTTGAAAA
i caePb3.Scfld02_62     C 0 I 688
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74578 676 -   141934 I
e caeRem4.Crem_Contig24  273817 1023 +  1162296 I

a score=0.000000
s ce10.chrX             1123779 1676 + 17718866  
e caePb3.Scfld02_62      377921  688 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74578  676 -   141934 I
e caeRem4.Crem_Contig24  273817 1023 +  1162296 I

a score=279.000000
s ce10.chrX             1125455 72 + 17718866 TTACTACATACATATTTTATTTTTCTAGTCGAGTCAAAAGAGTGAA--GTTCCAGTTTTCACAGAAA------GAAAAC-----T
s caePb3.Scfld02_62      378609 85 -   783054 TTACTACTTTTCTAGTTTGGTATTTTTCTCACCTCAAAATACGAAATGgttcaacatttttcggaaacgtTTCGAATGCCACGAT
i caePb3.Scfld02_62     I 688 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                18893 1617 + 21540570 I
e caeSp111.Scaffold514    74578 676 -   141934 I
e caeRem4.Crem_Contig24  273817 1023 +  1162296 I

a score=-520.000000
s ce10.chrX             1125527 2 + 17718866 -CG
s cb4.chrX                20510 2 + 21540570 -CG
i cb4.chrX              I 1617 C 0
s caePb3.Scfld02_62      378694 2 -   783054 TC-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e caeSp111.Scaffold514    74578 676 -   141934 I
e caeRem4.Crem_Contig24  273817 1023 +  1162296 I

a score=67.000000
s ce10.chrX             1125529 1 + 17718866 C
s cb4.chrX                20512 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  274840 1 +  1162296 C
i caeRem4.Crem_Contig24 I 1023 C 0
s caePb3.Scfld02_62      378696 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e caeSp111.Scaffold514    74578 676 -   141934 I

a score=53947.000000
s ce10.chrX             1125530 332 + 17718866 TGACCAGGATCTCTGTAATGTTTCATAAAATGTATAACGACTATAATAAAATTTAAGTGATTGCA----G-AAAA--CAGATAA---------------CGCCATGCCTTCTACTATTGACGTTTGTGCTCGGCGGTTCGATAAACTCTTGCCGCTGCTTT-TGAAGCCTTGTTTTTCAACA-TTTAC-AACAAGGTGGGTTTAGGT-ATTTTAAAGTTT---TCATA-----ATTT--C----TTATCAA-------TTTTAT-------TA-----TTATCAACAGATG------AAACAAAAATGCACCTGTT------------CATTATTT---ATAA-TGGTTTTAACATTTATTTCAATAGCTGATGCTGCTTCAGATGCTGCGAATAAGGGAGTTTATAAGGTGA
s cb4.chrX                20513 326 + 21540570 TGACCAGGATCTCTGTAATGTTTCATAAAA--TATAACGACTCTAATAAAATTTAAGTGAGTGCGTGCAGCAGAA--ACGATAA-------GAAAACTTCACCGCGAGTTGGATTGCTGATATTTCTGTGTG------TGGTGCA---------TTGAATC-AAACAGCACATTTAATTCTA-CTTTC-AGAACGGTGAGTTTAAGTTGATTTATA-------TTATA-----ATTG-------TTATCAA--------------------TAATGTTTTATCCTCAGATG------GAACA--GGACAAACTTTTGACTC-------Tcgttttt---acat-ttttgttgttgtgttTGACAGTTATCGACACAGCTTCTGATGCGGCAAACAAAGGAGTTTACAAAGTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  274841 336 +  1162296 TGACCAGGATCTCTGTAATgtttcataaaag-tataatGACTATAATAAAATTTACGCGATT-------GCAGAATCACGATAACGCAATGGAAACCTCCACCATAACTTCTATTATTGACATTTGTGCTCT------TGATAAA---------GTGTGTCGAGAGACCACATTCgattctg-ttttcaaaaatggtttgtttca---gatttagaGAG----TTATG-----AATGAGTAATCTTATCAA--------------------TG-----TTATTATCAGATG------CAAAGATGCAGAAACTTGTCATTG-------GCATTTTT---GTGTATCGTTTTGGCAGGCTTACCAGTGGCACAATCAGCGTCGGATGCAGCTAACAAAGGAGTTTATAAAGTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75254 317 -   141934 TAACCAGGATCTCTTTAATGCTTCATAAAAT-TATAACGACTATAATAAAATTTAGATTATTGCA------AGAG--ACGATAA-------GAAACCTCCACCGAGGCGTCTACTATTGACATTTGTGCTC------------------------TCT----CGAGACCACACTTTATTtggtttctg-aaaacatttggtTCTG---AATTTAAGA------TTGAA-----TTTGAAC----TCCTCAGACTGAAGCTTCATTTCAAACTA-----GTTTTATCAGATG------GGAATTAGTAgaaatcttt------------caattttt---ttgc-ttgttCTGGCAGGTT------TTGTACAAACTGCATCTGATGCAGCAAATAAAGGAATTTACAAAGTGA
i caeSp111.Scaffold514  I 676 I 28
s caePb3.Scfld02_62      378697 337 -   783054 TGACCAGGATCTATGTAATGTTTTATGAAAC-TATAATGACTATAATAAAATTTAAACGATTGCA----GCACAA--ACGATAAC------GAAACCCCCACCATGACTT---CTATTGACATTTGTGCTC------------------------TGTGAC-AGAGACcacattcaattttg-ttctC-CAAGCGGCTTGTTCTA---GAtttgaaacaagttttgtAAAATCTTTGAGC----TTCTCAAA-------TCCAT-------TA-----ATATTATCAGATGAAGGGAGCATTGAGTAGGAAAATTGTAtccaaattcacaatttttatctTGC-TGGTTCTTCAAGGTT------TTGTGGAACCTGCATCAGATGCTGCGAACAAAGGAGTCTATAAAGTAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I

a score=-5479.000000
s ce10.chrX             1125862 34 + 17718866 ATGTTCTCAAATTTAATAAAGCTTTCTAAAAAAA------
s cb4.chrX                20839 18 + 21540570 GGGTA----------------CTTTCTATAACAA------
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig24  275177 13 +  1162296 GTGTG---------------------GGTCACAA------
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_62      379034 16 -   783054 ------------------------ATTTTTACAGGTTCAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e caeSp111.Scaffold514    75571 28 -   141934 I

a score=-12409.000000
s ce10.chrX             1125896 216 + 17718866 CAATAACGTATTTTACAAAAAACTCATTTATGAAAATATGTTTTTTTTTTGAAATTTAATTTAGAACATCGCCTAGCAAATTTAATTTTTCTAATTTGGAAAACTTTCTTGA-----AGCTACAAAACTTTTTATTTTAATTTTCCAAATCCTGACTGCAATTTTGAATAGGCGATTTTGGCTGTTTTGTCTTGCATTATCAATTCCAATTTGAAATTTTC
s caeRem4.Crem_Contig24  275192 128 +  1162296 -GGTAACATTTTT-----ATGACT------------TGTGTTAGATTTCCG------CATTGTGAACagc-----------ttactgtttcaaatacgAATAGGTTTTTTGAATCTCGGTAGAAAAACTCCttttttt-----------------------------GTAGTAGTTTTTG------------------ATTAATTCTAAT-----------
i caeRem4.Crem_Contig24 I 2 C 0
s caePb3.Scfld02_62      379050  37 -   783054 ----------------------------------------------------------------------------------------CTcaaacaa---------ttttaa--------------------tttttt---------------------------------caggttttg---------------------aacACTA-------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                20857  79 + 21540570 I
e caeSp111.Scaffold514    75571  28 -   141934 I

a score=-11724.000000
s ce10.chrX             1126112 82 + 17718866 TGaaatttttttaaaaattacatttaagtttaattaaGAAACT---TAATTATAGAGTTGAAGTTTTTGTCAAGCAACTATCCCA
s cb4.chrX                20936 46 + 21540570 TGGTACTTTTAATAAATGTACATTC-------ATT---GAACGCGAAAAATAGACA-----------------------------
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig24  275320  8 +  1162296 ----------------------------------------------AAAATATA-------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      379087  8 -   783054 ----------------------------------------ACG---GAGTT----------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e caeSp111.Scaffold514    75571 28 -   141934 I

a score=34216.000000
s ce10.chrX             1126194 105 + 17718866 --ATTTCAGGTAGTAAATTCTACAACAAAAGAG---CCGTGTATAATATTCCAAGCAGATATATATTTATACCTAACTTATCACACCAGTGACAGTGAGGTAAGTGATTT
s cb4.chrX                20982  99 + 21540570 --TTTTCAGGTATATAGCTCT------GGTGTT---CCCTGCATAATTGTTCAAGCTGATATATACTTGTACCTTACATATCAAACAAGTGATAGTGAAGTAAGTGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  275328  98 +  1162296 ---TTCCAGGTCCTCAAAAAC------AATGTG---CCGTGCATAATACTACAAGCGGATATCTACTTATACCTTACATATCAAACTAGTGACAGTGAGGTAAGTGTTTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75599 104 -   141934 ATTTCCTAGGTAGTCGATTCT------AACGGAGTGCCATGCATCGTTGTTCAAGCGGATATTTACCTGTATCTCACATATACAACAAGTGATAGCGAGGTAAGTACTTC
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      379095  74 -   783054 ------------------------------------CCTTGTGTGATAGTTCAAGCCGACATATATCTATACCTCACATATCAAACAAATGACAGTGAAGTAAGTTGTTT
i caePb3.Scfld02_62     C 0 I 56
e caeJap4.Scaffold17966   18727 1352 -   140921 I

a score=-987.000000
s ce10.chrX             1126299 2 + 17718866 TT-
s cb4.chrX                21081 2 + 21540570 -TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  275426 1 +  1162296 -T-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75703 2 -   141934 AT-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      379169 56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I

a score=300.000000
s ce10.chrX             1126301 1 + 17718866 C
s caeRem4.Crem_Contig24  275427 1 +  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75705 1 -   141934 C
i caeSp111.Scaffold514  C 0 I 49
e caePb3.Scfld02_62      379169 56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                21083 0 + 21540570 C

a score=-954.000000
s ce10.chrX             1126302 143 + 17718866 ACTA-----------------TTTCG-------AAAATTCATCCAAAAGTGAA--ACAACTTGAAAACCACAAAAACTGAATAGACTACATTTGA--CATGTCTATTTCTACAATTATCAGCAAGTTCAAGCCATGTGTCATTTGACATTTGTGTAGTTTTTGGTATTTTG
s caeRem4.Crem_Contig24  275428 160 +  1162296 ACAAAGATAAATGTTGTATACTTTTGTTTGTTCAATATTCGGCAGTCActaaattactgtttcaaactagACAAGAGTTAACAAAATGAAGTTGAACCATATTAATT------ATTCTCTT----TTCGCGTCTTGTATT-TTTTAGATTCGGACAGTTTTAACTGTTCTA
i caeRem4.Crem_Contig24 C 0 I 100
e caePb3.Scfld02_62      379169  56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                21083   0 + 21540570 C
e caeSp111.Scaffold514    75706  49 -   141934 I

a score=0.000000
s ce10.chrX             1126445 79 + 17718866 TGACTTGTGAGGGTACGTAAAATAAAAGAAAAGTAGGATTGAATAGTATCCAAATTTTTTTGAAATCTGATTTTGAAGC
e caePb3.Scfld02_62      379169 56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                21083  0 + 21540570 C
e caeSp111.Scaffold514    75706 49 -   141934 I
e caeRem4.Crem_Contig24  275588 100 +  1162296 I

a score=-2477.000000
s ce10.chrX             1126524 243 + 17718866 TTTGAAGTATAA------TGGCTTTTAAAGGTGCTAC------ACGTAGGTAGGCAGAAATGTATTCAGGTGTATGTGCTTGCCTT----------------------------TCTATATTTTGCATTT------------TGGCATTCAA-------CTTGTC---GGTTTAGCAAACAAAAAGCCGTAATGTAGCCTACAAGGACGGAAGTAGTGAATCACTGAAGT----ACATATAACCAAGGA-----------------CCAAA------------------AACAT----TTTCAAA--------------ACGTAGTAGG------CAATTTTTCATACGAC------TAAAGCTAGATTGTAGT
s caeRem4.Crem_Contig24  275688 368 +  1162296 TTTGAAGTATACcgattttggtttttgatgattttactAGAAAAGGTCAAGAGCCAGTTTTATGTT-AGGCG-ACGTGAtctcattggaaagctgaaaatacgctgattccaaatctaTATTTAGTATTTGCCCTCGAGAGCTGCTATTCGAAAAACGTTTcgtcaaagttctgaaaaattacaaattat----taattttctgaCACgggaaaaattgttcattgaaattttcgcgtgttagaaagggaaaaattctttatttttccaaagttAAACCTTTTTTCTCGAACACCAGATTTCAAATGCAAAAGCTGAGTATATATtaggaatcagcgtttttttaGCCTTCCAGTTATAGAGATAGCGTCCTAT
i caeRem4.Crem_Contig24 I 100 C 0
e caePb3.Scfld02_62      379169  56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                21083   0 + 21540570 C
e caeSp111.Scaffold514    75706  49 -   141934 I

a score=-3769.000000
s ce10.chrX             1126767 44 + 17718866 -----------------------------------AATTAAAAACG----------------------TCGATGCACCATGATCAAACCTGAATTTTTCCA
s caeRem4.Crem_Contig24  276056 99 +  1162296 AACTCagaactgactccatgaccttttCTAGttagaatacaaaaaaagcaTTGGAAAATGCATTATGTTAGAAGGTCTATG--AGACCTTGTATTCTCATG
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514    75755 39 -   141934 -----------------------------------aattaaaaaaa----------------------ttaacaactTGTG--CAAACCTGATTTCAA---
i caeSp111.Scaffold514  I 49 C 0
e caePb3.Scfld02_62      379169 56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e cb4.chrX                21083  0 + 21540570 C

a score=194.000000
s ce10.chrX             1126811  9 + 17718866 CAATTC--------TCG
s cb4.chrX                21083  9 + 21540570 CAATTA--------TCG
i cb4.chrX              C 0 I 13
s caeSp111.Scaffold514    75794 17 -   141934 CAATCAAACAAAACGCG
i caeSp111.Scaffold514  C 0 I 15
e caePb3.Scfld02_62      379169 56 -   783054 I
e caeJap4.Scaffold17966   18727 1352 -   140921 I
e caeRem4.Crem_Contig24  276155  2 +  1162296 I

a score=76153.000000
s ce10.chrX             1126820 143 + 17718866 TTTTACAGAAGGACGTGATAGTTCATGTGCCAACATCCTCAACAGCGGACACTGGGGTGTCATCATGCAACGTTACGATAACCACGTCTGGAATGTCTGTTGAATCTCAGTTACTGAGAGTAAACTTGGACCATGTAAGTTTT
s cb4.chrX                21105 143 + 21540570 GTATTCAGAAAGATGTGGTTGTCCACGTGCCAACTTCTTCGACTGCGGATACTGCTGTATCCACTTGTGACACATATATAGCTACTGCTGGCATGTCGGTTCCAGCTCAACTTCTACGAATTAATTTGTACCAcgtgagtttt
i cb4.chrX              I 13 I 389
s caeRem4.Crem_Contig24  276157 143 +  1162296 ATGTTCAGAAAGACGTAGTTGTACATGTCCCAACGTCCTCCACCGCTGATGCTGGTTACTCAACATGCGATGCCACCATAACCACTTCAGGAATGTCAATCAGCTCCCAACTACTCAGGATCAACTTGTATCATGTAAGATTC
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514    75826 143 -   141934 attttcagaaagacgTAGTTGTTCATGTGCCCACGTCTTCAAAAGCCGACACGGCAGTTTCGTCGTGTCACACCACAATAAACACAGCAGGAATGTCAATCGATGCTCAGTTATTGAGAATCAACCTTGATCATGTGAGGTTT
i caeSp111.Scaffold514  I 15 I 1
s caePb3.Scfld02_62      379225 143 -   783054 TCTTCCAGAAAGATGTAGTTGTACATGTCCCGACATCTTCTACAGTTGACAAAACGATATCATCGTGCGACACATCCATTACCACATCTGGATTATCTGTTAGCGCTCAGTTGTTGAGGATTAATCTGGATCatgtaagtttt
i caePb3.Scfld02_62     I 56 I 1
s caeJap4.Scaffold17966   20079 141 -   140921 TTTTCTAGAAAGATGTTACTATCCACGTTCCAACATCATCTAAAATTGACTCGGACATATCTTCTTGTGATGTAACTATAAGAACCGCCGGAATGTCAGTGCAATCACAGCAGATGAGAATAAAACTAGACCATGTAggtt--
i caeJap4.Scaffold17966 I 1352 C 0

a score=-7152.000000
s ce10.chrX             1126963 56 + 17718866 AATTTATATACTTTATTTGTAAAAAGTTATACAAAGTTATAACAACTATTCAAATA
s caeSp111.Scaffold514    75970  2 -   141934 AT------------------------------------------------------
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      379369 56 -   783054 agtttatggcttcaaaattgaatattttctatAAGGAAATAAATCCGCTTTGAATG
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   20220 25 -   140921 --------------aatttaattaatttgtaaacaaata-----------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                21248 389 + 21540570 I
e caeRem4.Crem_Contig24  276300  0 +  1162296 C

a score=-23846.000000
s ce10.chrX             1127019 108 + 17718866 ATT---------------------------------------------TTTAA------------------------------------CATGAAAGGAGTAAATAGGTAGTGAAACATTTTCGTATAGCTTGAAGTTTTAAACAACG------------------TGCTGCATAAATTTACTATAGACGTACCTGTAAATTCAAAT
s caeRem4.Crem_Contig24  276300  32 +  1162296 ------------------------------------------------TTTGA-----------------------------------------------------------------------------------------------------------------CATTCTGTTATTTTCACCTGGACGTAA--------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75972  14 -   141934 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCATGTCa---------------------------aact
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      379425 199 -   783054 TTAGAAGAGCTTATCCGCAAAGCTTCAAAACCCTGAATGAAAAGAGTATTTGAAAACCCCCAATTCCCTGTTTTTAGTATTCCTGCTTCTaaaaaaaGAG------GGTATGAAAACAGGGTCGGCTTGCTTG--GTTGTAAATAAACCAGGAGCTATACGAAAGATGCTACGTCACttctactgaaaaacaaagctttccacaatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20245   0 -   140921 C
e cb4.chrX                21248 389 + 21540570 I

a score=546.000000
s ce10.chrX             1127127 1 + 17718866 T
s caeSp111.Scaffold514    75986 1 -   141934 t
i caeSp111.Scaffold514  C 0 I 11
s caePb3.Scfld02_62      379624 1 -   783054 t
i caePb3.Scfld02_62     C 0 I 21
s caeJap4.Scaffold17966   20245 1 -   140921 t
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                21248 389 + 21540570 I
e caeRem4.Crem_Contig24  276332 0 +  1162296 C

a score=252423.000000
s ce10.chrX             1127128 693 + 17718866  
s cb4.chrX                21637 532 + 21540570  
i cb4.chrX              I 389 C 0
s caeRem4.Crem_Contig24  276332 554 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    75998 556 -   141934  
i caeSp111.Scaffold514  I 11 C 0
s caePb3.Scfld02_62      379646 557 -   783054  
i caePb3.Scfld02_62     I 21 C 0
s caeJap4.Scaffold17966   20246 576 -   140921  
i caeJap4.Scaffold17966 C 0 I 6450

a score=-374.000000
s ce10.chrX             1127821 1 + 17718866 T
s cb4.chrX                22169 1 + 21540570 t
i cb4.chrX              C 0 I 177
s caeRem4.Crem_Contig24  276886 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 I 153
s caeSp111.Scaffold514    76554 1 -   141934 A
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      380203 1 -   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I

a score=-1043.000000
s ce10.chrX             1127822 3 + 17718866 AGC--
s caeSp111.Scaffold514    76555 5 -   141934 ATAGC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      380204 3 -   783054 AAC--
i caePb3.Scfld02_62     C 0 I 43
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22170 177 + 21540570 I
e caeRem4.Crem_Contig24  276887 153 +  1162296 I

a score=-423.000000
s ce10.chrX             1127825 45 + 17718866 TCTACGTTAAATTGTTTACCTATTCATGGTGCATCGGAGGTTTCG
s caeSp111.Scaffold514    76560 38 -   141934 T----GTCAAATCTTTAATACATCAAAATTCTAT---AGATGTTA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      380207 43 -   783054 I
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22170 177 + 21540570 I
e caeRem4.Crem_Contig24  276887 153 +  1162296 I

a score=-5196.000000
s ce10.chrX             1127870  64 + 17718866 GGCAGATT----TTAATTTTTGAAAACAAAAAATTGGCTGTGAGAATAGTATA----------TTCAGGTT------------ACCG---------------------------------GCT
s caeSp111.Scaffold514    76598  92 -   141934 GGTAGttt---------ttttGCTTGTAGTAACACCgcccaaaaaattgaacaaccGAAAAACTTCACGTT-----AGCACTGGTCG-----------------TGTTTCAAACCTTTGGGCC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      380250 119 -   783054 ----GTCTGAACTAAAGTTTTAAAGTTAGTATAACCACTTTGAGAACTGTGTGTACATCAAGTTCCGAATTTCTTAAATAAAagtcgaaatgaaaaaacccccacttttcttccattttgatt
i caePb3.Scfld02_62     I 43 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22170 177 + 21540570 I
e caeRem4.Crem_Contig24  276887 153 +  1162296 I

a score=-31061.000000
s ce10.chrX             1127934 145 + 17718866 -----------------------------AAATGTGAAGCCGGGAGTTTTGAAGCAGAACTAGG------TCTGTAACAAAGCTGTGCAAAGT---------TTGACAAAAAAACCAGC-------AAAA------------TGCCGATAACTAGAAACTGTA-------------AATGTTC--------------------TACTTTCCCACACTGTATCAAAAATTCCCAGC----------GATTTA-----
s caeRem4.Crem_Contig24  277040 216 +  1162296 AAACGTACAGCGTT--------ATTATTGAGACATCATATT--TCTTCTCGCAAATTTTTCTCGCAAGGCGATAAGGGATTTCAAAGTAAAACCTGAGGTATTCGaccagaaaaccaaa-------aaattagtGATCAGACTGAATACTGTCCCAGGTAGTGTAAATTCTAGTTCAGGATTTGCAATTCAATTTGTCAAACCTGtgttttta-attgtttca----------------------gCAGTATTTGA
i caeRem4.Crem_Contig24 I 153 I 413
s caeSp111.Scaffold514    76690 112 -   141934 --------GGTCTT--------ATT-TCGGCAGGtaatac---tcattttga------------------ccaGTGTTACtacaatctgaaaa---------tttttttaaattccagA-----------------------AGCAATCAGCTCGGAATTGTT---------------CGTTC--------------------------------TTATTTTA----------------------GAATTA-----
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      380369 220 -   783054 --------ggttttgaaGCCAAAGT-TTAGCATGTCTTGcc-atcaaattgaaaaaaaatccgactAGATCCAATGAGGTGACTGAGTAAAga---------tcaattcaaaattcaaatattacgaaattttttttctgattgttgcCAACtatgaattgtttcaaatcaaTCCCAACGTTTGAAATGA-----GTCACTCTTGAT-------GTTGTTTtaaccatttttcatcaaatattgTGAAATA-----
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22170 177 + 21540570 I

a score=297.000000
s ce10.chrX             1128079 6 + 17718866 CATAGT
s caeRem4.Crem_Contig24  277669 6 +  1162296 CATAAA
i caeRem4.Crem_Contig24 I 413 I 3
s caeSp111.Scaffold514    76805 6 -   141934 TAAAGC
i caeSp111.Scaffold514  I 3 C 0
s caePb3.Scfld02_62      380594 6 -   783054 CATTAT
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22170 177 + 21540570 I

a score=46512.000000
s ce10.chrX             1128085 144 + 17718866 ---TTTCCAATTCAGATCTATCGAAGCTTCTTACCAGAGGAGGTGCTCAATTTGGTCAACCCAGAAGCTCATTTTGACAGTGACACAGCTTCCAATGACGAAATAGACAAGACATCTTCAATTGAGCGATTTTGatttttaattttc
s cb4.chrX                22347 131 + 21540570 ---ttcaaaattcagatataCCGAACATTTCTGCCGGAAGAAGTTCTAAACTTGGTCAACCCAGATTCCCATTTTGGCAGTGACA------GTGGAAACGAACTGAGTAAAGATGACATCCTTGAAcgattttagtattt-------
i cb4.chrX              I 177 C 0
s caeRem4.Crem_Contig24  277678 141 +  1162296 ---TTC---ATTAAGATCTATCGAACATTCCTCCCTGAAGAAGTTCTCAATTTGGTCAACCCGGAGTCTCATTTTGACAGTGACAGCGCTGGCGGATATGACAATGACAAAGATATGGTTCTCGAGCGAttctaattttccatttcc
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514    76811 137 -   141934 AGCCTGAATTTATAGATTTATCGGACGTTTCTCCCGGAAGAAGTACTTAACTTGGTAAACCCAGATTCTCATTTTGACAGTGACAGTGCCGAAGGACATTCAAATGACAATGAATCAGTTCTTGAacgtttttaaat----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      380600 147 -   783054 TggctaaattttcagatttaccGAACATTTCTGCCGGAAGAGGTGTTAAACTTGGTCAATCCAGAATCTCATTTTGACAGTGATAGCGCAGAAGGACACGATAATGACAAACACTCAACATTGGAACATTTCTGAAtgctgtttttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I

a score=-7939.000000
s ce10.chrX             1128229 73 + 17718866 tttttttaaaaatttttCCACACTCTTGATTTAATAAA-ATGAAGGAATTG------TCGAGCTTTTCAGTTTCTTTTAC
s cb4.chrX                22478 73 + 21540570 ---tttcaaaacttctcgTCTTTCaataatataataat----aataaatattCTTTCTTGAGTTATTCAACTTTCTTGCC
i cb4.chrX              C 0 I 183
s caeSp111.Scaffold514    76948 16 -   141934 -------------------------------ttttaaa----gatacATTC-----------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      380747 39 -   783054 ------------tctttttctatccaaaacgttttaaaattgaataaattt-----------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e caeRem4.Crem_Contig24  277819  0 +  1162296 C

a score=-4055.000000
s ce10.chrX             1128302 92 + 17718866 AAATTAATGTTTTTTTGAAAAACTGAAGGTTGGTTGTGGATTACAGATTTTTGCCTGGAATATTTTAAAATACTGAAAAATCCAAAACTATT
s caeSp111.Scaffold514    76964 58 -   141934 Gaataaactgttt---------------------------ttttaaatttctccAGG-------TTAGAAAACAGTGTGAGCAAAAACTATC
i caeSp111.Scaffold514  C 0 I 101
s caePb3.Scfld02_62      380786 58 -   783054 acatccatctttttct----------------------ccttctccatctctccttc-------ttcctgaGTTGTTTACTAAAAGA-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I
e caeRem4.Crem_Contig24  277819  0 +  1162296 C

a score=-88.000000
s ce10.chrX             1128394 57 + 17718866 TCGATGG--AAAAATTTCTGATTGAAGTTTTCAGTTGTTTGATTCAAAAAAAATGTCAC
s caePb3.Scfld02_62      380844 41 -   783054 -CGACAGCAAAAAACGAGTGCGCGAAGT-----------------AAAAGCGATGACGC
i caePb3.Scfld02_62     C 0 I 41
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I
e caeSp111.Scaffold514    77022 101 -   141934 I
e caeRem4.Crem_Contig24  277819  0 +  1162296 C

a score=0.000000
s ce10.chrX             1128451 72 + 17718866 CTGCTTATTGACACGTTACTATAGGAAACGTGGATTTTGTGGGCAAAAAAAACTGAATTTTTTGAATTGATT
e caePb3.Scfld02_62      380885 41 -   783054 I
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I
e caeSp111.Scaffold514    77022 101 -   141934 I
e caeRem4.Crem_Contig24  277819  0 +  1162296 C

a score=-25.000000
s ce10.chrX             1128523 23 + 17718866 TCTTAAAATTCATAATCAAAAT-----T
s caeRem4.Crem_Contig24  277819 24 +  1162296 tctCAA----CACGAATAAAATCTTCTT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      380885 41 -   783054 I
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I
e caeSp111.Scaffold514    77022 101 -   141934 I

a score=-3806.000000
s ce10.chrX             1128546 66 + 17718866 ------------TTGCATTTCCCATATTAAATCACGTCAATTTTCCAAACCGGTTTCTTCATAAACACGACAATAAAA
s caeRem4.Crem_Contig24  277843 61 +  1162296 TTATATCTTTTATCGTTGTTTCTCTATTCCATCGGtctatctctcc--------tctttcgtcatcacc---------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      380926 46 -   783054 ------------TTGCTTTTCTCCGACGCAATTGACAGAGA--------------CATTCCTCCATACCAAA------
i caePb3.Scfld02_62     I 41 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I
e caeSp111.Scaffold514    77022 101 -   141934 I

a score=-4787.000000
s ce10.chrX             1128612 51 + 17718866 CATTGTTTT--CCATTCTCCTC---------GCCCCGCACGCGCGACGAACGATGACTAACA
s caeRem4.Crem_Contig24  277904 62 +  1162296 cattgttttctcttctctcttttctcccttttctccGCACAAAAACAAGACGATGACGAATA
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold514    77123 11 -   141934 -----------CATTGTTCTTC----------------------------------------
i caeSp111.Scaffold514  I 101 C 0
s caePb3.Scfld02_62      380972 20 -   783054 --CAGTCATCTCGTTTCTCCTC----------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I
e cb4.chrX                22551 183 + 21540570 I

a score=-17557.000000
s ce10.chrX             1128663 71 + 17718866 AGTGCAAGCGCGCTCCGCTGCACACCTCCCCCTTC---------CACATGTGAATGGAGGTC------AGTGTGTGCACACGGACC--------------------
s cb4.chrX                22734 67 + 21540570 attgcaaacgcgctctgt----------------C---------AGCCTGCTAACCTC-ACCGACCACGGTTAGCACAAATACACAT------ATAA-------CT
i cb4.chrX              I 183 C 0
s caeRem4.Crem_Contig24  277972 85 +  1162296 gatgcaaacgcgctcgcTCGCA------------C---------AGCGGGGTGGTCTCGGCCTTCTTATGCAAACACAAACAGACATTCCTCCATGAGACGGTCCT
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold514    77134 57 -   141934 -------TCGCTGTTCGC----------------CTTCTGTTTAGGAAAGAGAACGTGGTCC------GGGTCACACACACACCTT--------------------
i caeSp111.Scaffold514  C 0 I 20
s caePb3.Scfld02_62      380992 48 -   783054 -------CCACAACCCCC----------------C---------GGTCAGTGTTTGTGGTCC------GGTGTGTACACGTAGCCC--------------------
i caePb3.Scfld02_62     C 0 I 62
e caeJap4.Scaffold17966   20822 6450 -   140921 I

a score=-7912.000000
s ce10.chrX             1128734 45 + 17718866 ----GTTCCCTGTGTTTTTTGCA-------GTGTGCGCGTCGTGGTCCGCACA-TCG------------
s cb4.chrX                22801 64 + 21540570 GTTCATCGCAAACGAATTTCTCGTCTCCCAGAGGGTTGGTTGTGTCCTCCACAGTCT--TCCTCCA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  278057 59 +  1162296 CCTCAACCCACACATGTTTTTTG-------GGGAGAGGACGGTGGCCAACGAGGTCCGGCCGGCCG---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77211 45 -   141934 ----gttctctatttcttttccG--------------------CACCTCAGCTGTCGAGTCTCTCattg
i caeSp111.Scaffold514  I 20 C 0
e caePb3.Scfld02_62      381040 62 -   783054 I
e caeJap4.Scaffold17966   20822 6450 -   140921 I

a score=-13321.000000
s ce10.chrX             1128779 22 + 17718866 ---------------------ATTCTAGCCAAAGGGGCGA--CTA---------
s cb4.chrX                22865 41 + 21540570 AATCTTT-CAGTGTATTGATTATT----CAATAC--------GTCACCATAACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  278116 47 +  1162296 ATTGTTTACTGTTTATCGATTATTTCCGCGATACGTGTCACTGTC-------TC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77256 16 -   141934 -----------------ttttatt----taaaaC--------GTA---------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      381102 11 -   783054 ---------------------ATt----ctaaa---------ata---------
i caePb3.Scfld02_62     I 62 C 0
e caeJap4.Scaffold17966   20822 6450 -   140921 I

a score=67790.000000
s ce10.chrX             1128801 434 + 17718866  
s cb4.chrX                22906 407 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  278163 432 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77272 363 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      381113 406 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  115357 407 +   140921  
i caeJap4.Scaffold17966 T 16523 I 39

a score=-124439.000000
s ce10.chrX             1129235 375 + 17718866  
s cb4.chrX                23313 217 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  278595 616 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77635 116 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      381519 194 -   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  115764  39 +   140921 I

a score=70562.000000
s ce10.chrX             1129610 133 + 17718866 AAT------GACAATCACTACGCTCAAATCTCGCCCGAACCAGCACTCTCCAACTTCAAAGTCACAATGCGGGAATTCGAGAAGCGCGGTGACGGCATGAACGCCTATATTGTATACAAACTCGAGACTGAGGTACG---------------AC
s cb4.chrX                23530 151 + 21540570 AACCAC---AACGACCACTATGCTCAAATCTCGCCTGAGCCTGTGCCAATTAAGTTCAATATCATCATTCGTGAATTCGAGAAGCGTGGTGACGGAATGAACGCTTATATCGTTTATAAGCTTCAGACTGAGGTATTTTGAATACATATGCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279211 153 +  1162296 AACCACATTAACGATCACTATGCGCAAATCTCGCCGCTTCCCCAGCCCACTCACTTTAAAGTCATCATTCGTGAATTTGAGAAACGTGGCGATGGAATGAACGCATACATTGTTTATAAATTGGAGACAGAGGTATCGT-ATTCAAAATGGGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77751 137 -   141934 AATCATGAAAGCAATCACTATGCACAAATCTCTCCCGAGCCGGTACCAACCAACTTCCGGGTTCAAATTCGGGAATTCGAGAAACGTGGAGATGGCATGACCGCCTATATTGTTTATAAAGTAGAGACCGAAGTCAA-----------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      381713 137 -   783054 AATCATGACGACAACCACTACGCTCAAATCTCTCCTGAATTTACCCCATCCAACTTCAAAGTGACGATTCGAGAATTTGAAAAGCGTGGTGACGGTATGAATGCCTACATAGTCTATAAGTTGGAGACCGAGGTGTC-----------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  115803 133 +   140921 ------AGTGTGAATAGATATGCTCAAATATCCCCCGAACCTACACCAAACTCGTTCAAAGTTCAAGTTTGCGATTTTGAGAAGCGTGGAGATGGTATGAATGCATTCATTGTGTataaaattcaaacaacggtaagat---------------
i caeJap4.Scaffold17966 I 39 I 23

a score=-1036.000000
s ce10.chrX             1129743 20 + 17718866 AAGCCGATGCCAAAACGATA
s cb4.chrX                23681 19 + 21540570 AAATcgcttttaaaaaaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279364 12 +  1162296 aaa-------tgaaacata-
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      381850  0 -   783054 C
e caeJap4.Scaffold17966  115936 23 +   140921 I
e caeSp111.Scaffold514    77888  0 -   141934 C

a score=94180.000000
s ce10.chrX             1129763 148 + 17718866 AAAGAGCTCTTTGGTTTCAGGTGTCCGGAGTTGTTGGATACACAAAGCAACACTATGAGACGTGGCGCCGGTTCTCGGACTTCTTGGGACTTCATGGCAAGATCGTGGAGAAGTATCTGGCCAAAGGAATCGTCATTCCTCAGCCACC
s cb4.chrX                23700 136 + 21540570 ------------agtttcaggttAGCGGCGTCGTTGGTTACGCCAAAACTTATTACGAGACGTGGCgtagattttctgattttcttggtcttcatggaaaaattgtcgaaaagtATCTCTCCAAGGGAATCGTCATCCCGCAGCCACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279376 142 +  1162296 ------ttttttggtttcaggtGAGCGGAGTGGTTGGATACTCGAAGCAACAGTATGAGACGTGGCGTCGATTCTCCGATTTCCTCGGACTTCATGGGAAGATTGTGGAGAAGTACCTGGCGAAGGGTATCGTGATTCCACAACCACC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    77888 123 -   141934 -------------------------CGGCGTGGTTGGCTATACAAAGCAGCACTACGAGACTTGGCGCcgtttttccgattttctgGGTCTTCATGGGAAAATAGTCGAAAAATATCTCGTCAAAGGAATTGTCATTCCACAACCGCC
i caeSp111.Scaffold514  C 0 I 18
s caePb3.Scfld02_62      381850 123 -   783054 -------------------------TGGTGTTGTTGGATACATCAAGAAACAATACGAAACTTGGCGTCGATTCTCGGATTTCTTGGGCCTTCAtggaaaaattgtggaaaagtACTTGGCGAAGGGTATTGTTATCCCTCAACCACC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  115959 145 +   140921 ---aaaatgatttttatcaGGTAGACGGAGTTGTTGGTTATACCAAACATCAGTATGAAACTTGGCGAcgcttttccgattttctcgGTCTTCACGAAAAAATGGTTGAGAAATATTTAGCGAAAGGTGTTGTTATACCGATTCCACC
i caeJap4.Scaffold17966 I 23 C 0

a score=11437.000000
s ce10.chrX             1129911 18 + 17718866 TGAGAAAAGCATCTCAGC
s cb4.chrX                23836 18 + 21540570 AGAGAAAAGCATATCGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279518 18 +  1162296 GGAGAAGAGTATCTCGGC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      381973 18 -   783054 GGAGAAAAGCATTTCTGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  116104 18 +   140921 GGAAAAGAGCATTTCAGC
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    78011 18 -   141934 I

a score=6595.000000
s ce10.chrX             1129929 19 + 17718866 ACTGACCAAGACAAAGGTA
s cb4.chrX                23854 19 + 21540570 TCTCACCAAAACAAAggtg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279536 19 +  1162296 GCTGACAAAAACTAAGGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      381991 19 -   783054 TTTGACCAAAACAAAGGTA
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966  116122  0 +   140921 C
e caeSp111.Scaffold514    78011 18 -   141934 I

a score=-4135.000000
s ce10.chrX             1129948 79 + 17718866 CTTGGAATATAATATGAGAGAGCTCTGGAACATTATGGAAGCTAACTTCAAAAAAAATTCTGAAAAATTATACAACTCT
s cb4.chrX                23873 14 + 21540570 -------------------------------------------aactttgaaaaaaa----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279555 23 +  1162296 -------------------------------------------AGCACCAAAACGGGTT------AGCTGTA-------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      382010  5 -   783054 I
e caeJap4.Scaffold17966  116122  0 +   140921 C
e caeSp111.Scaffold514    78011 18 -   141934 I

a score=0.000000
s ce10.chrX             1130027 41 + 17718866 GAAAAAAAATGTTTGCTCAAAAGAACTAGCGGGAACACTCC
e caePb3.Scfld02_62      382010  5 -   783054 I
e caeJap4.Scaffold17966  116122  0 +   140921 C
e cb4.chrX                23887  0 + 21540570 C
e caeSp111.Scaffold514    78011 18 -   141934 I
e caeRem4.Crem_Contig24  279578  0 +  1162296 C

a score=-59.000000
s ce10.chrX             1130068 10 + 17718866 AGCCACGCCT
s caeRem4.Crem_Contig24  279578  5 +  1162296 --CCACG---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      382010  5 -   783054 I
e caeJap4.Scaffold17966  116122  0 +   140921 C
e cb4.chrX                23887  0 + 21540570 C
e caeSp111.Scaffold514    78011 18 -   141934 I

a score=-19574.000000
s ce10.chrX             1130078 128 + 17718866 TCTTACCAAATTTATCATGGCTTCCAATATTTTGTCTATAAATTTTGGATTCATTTTCAGAAAACGGTTCACAAAATGTGCTCTTTTTAAGGGTTGGGTTTTTAAAACTAAAAAAACCGCCCGAAACT
s cb4.chrX                23887  22 + 21540570 -------------------------------------------------------------aaac--------------------actga-----------tcAAAAC--------------GTAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279583  43 +  1162296 ----------------------------ATTTTGGCTATC--------ATCCAATTTTATCGACC--------------------TCTca-----------ccaaa------------------aact
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    78029  20 -   141934 -------------------------------------------------------------------------------------TCTGA-----------CTAAGACTAAG----------GCaa--
i caeSp111.Scaffold514  I 18 C 0
s caeJap4.Scaffold17966  116122  22 +   140921 -------------------------------------------------------------------------------------CCTTA-----------CCAAAACGAAG----------GTAAAG
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      382010   5 -   783054 I

a score=313476.000000
s ce10.chrX             1130206 494 + 17718866 GTTTTCTGAGCATTAACTCTGATTGCTGTTGTCTGATATTGCAAACATTTCGAGAACACTACGAAATTGTAATTTATTAACATTTTGATCAATAAAACATTTTCAGACAAACTCGGACCCTGCAATGAGCCGCGAAGTTGGAATCCAGCGTGCCCGCCAGCTGGAACGCTACATTTGCCGCCTCATCCAACACCCACGGATGAGAAACGACTGCGATGTGCGCGACTTCCTCACAATTGAGTCGGACCTGCCAAAAGCCGTGCAGACGGCTGCACTGTCAAGCTTCGGAGTGAAGAAGATCTTCAAGAACTTCCAAGTCGTCTTCTCCAAGATGGCATTCCACATGGAGGAGGGTGATCGATGGTTTGAGCAAGTGCAATCGCAGGTTGATGAGCTTGATGAGGCGTTGCGCAAGCTGTACACGGTCACGGAGACGCTAGTGGCTTCTCGTAGAGATATGGCGACCAGTGGAGAGCAATTGGGGAAGGTGAGCT
s cb4.chrX                23909 399 + 21540570 -----------------------------------------------------------------CTTGTT-----------------------------TTCTAGACAAACTCGGACCCGGCCATGAGTCGAGAAGTTGGAATTCAACGTGCACGTCATTTGGAACGCTACGTCAGTCGCTTGGTTCAGCACCCACGCATGCGAAACGACTGTGATCTTCGCGACTTTCTCACAATTGACTCAGATCTTCCAAAAGCAGTGCAAACCGCTGCGTTGTCAAGCTTCGGagtgaagaaaattttcaagaacttCCAAGTTGTCTTCTCCAAGATGGCTTTCCACATGGAGGAAGGAGATCGTTGGTTCGAACAAGTCCAGTCACAAATCGACGAACTCGATGAAGCCCTTCGCAAGTTGTACACTGTGACCGAGTCGTTGGTGGCTTCTCGTAGAGAAATGGCAACAAGTGGAGAGCTGTTAGGGAAAGTGAGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  279626 400 +  1162296 -----------------------------------------------------------------attttc-----------------------------ttacAGGCCAACTCTGATCCCGCCATGAGTCGCGAAGTCGGAATCCAACGTGCCCGCCAACTCGAGCGATACATCAGTCGACTCATTCAGCACCCGAGAATGAGAAACGACTGCGACGTCCGTGACTTCCTCACAATTGAGTCGGATCTTCCGAAAGCTGTTCAAACAGCCGCGTTGTCTAGCTTCGGAGTgaagaaaatcttcaaaaacttccaaGTTGTGTTCTCGAAAATGGCTTTCCACATGGAAGAGGGAGATCGTTGGTTTGAACAAGTTCAGTCGCAGATTGATGAGCTCGATGAGGCTCTTCGCAAGTTGTACGCTGTCACCGAGACGTTGGTTGCTTCTAGAAGAGATATGGCCACTAGTGGAGAACAAATGGGAAAGGtgagca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    78049 425 -   141934 -----tataatatt------------------------tt------------gaacCAAT-----GCTCTAATTCGCt--------------------ttttttAGACAAATTCTGACCCTGCTATGAGCCGTGAAGTCGGAATTCAACGAGCTCGTCAACTGGAACGGTACATCAGCCGTCTTATTCAACATCCTCGAATGAGAAACGATTGTGACGTCAGGGACTTCCTAACAATTGAGTCGGATCTGCCTAAAGCTGTTCAAACCGCCGCACTCTCCAGTTTTggagtgaaaaaaattttcaaaaacttccaagtcgtattttcaaaaatggcaTTCCATATGGAAGAGGGGGACCGTTGGTTTGAACAAGTTCAATCTCAAGTCGATGAGCTTGATGAAGCATTACGAAAACTTTACGCTGTAGCAGAGACTTTAGTGGCTTCTCGTAGAGATATGGCAACAAGCGGAGAGCAGTTAGGAAAGGTag---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      382015 426 -   783054 gttctttgaacatt------------------------tt-------tcttcgaaacacT-----ATTATA-----------------------------TTTTAGACAAACTCTGACCCCGCAATGAGCCGTGAGGTTGGTATCCAACGTGCTAGACAGCTGGAGAGATACATCGGTCGTCTTATTCAACACCCGCGAATGAAGAATGATTGTGACGTCCGCGACTTCCTGACCATTGAGACCGACCTTCCAAAAGCAGTTCAAACTGCTACCCTGTCAAGCTTCGGAGTGAAGAAAATCTTCAAGAACTTCCAAGATGTGTTTTCCAAAATGGCATTCCATATGGAGGAGGGAGATCGTTGGTTTGAACAAGTGCAGTCCCAAATTGATGAGCTTGATGAAGCACTGAGAAAGCTGTACTCCGTCACTGAGGCCTTGGTTGCAGCTCGTAGAGAAATGTCTACATCTGAGGAACAACTGAGCAAGGTGA---
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold17966  116144 430 +   140921 ----------------------------------------------GCATCAACAACAGTTTAATATTATT------------------AAATGAACAATATTCAGACAAACTCCGACCCTGCTATGAGCCGCGACGTTGGAATTCAACGTGCCCGTCAATTAGAGCGCTACATCTCGCGCCTAATTCAGCACCCACGGATGCGAAACGATTGTGATGTGCGTGATTTTCTCACCATTGAATCTCATCTTCCAAGATCTGTTCAAACGTCCACTCTTTCTACTTCGGGAgttaagaaaattttcaagaatttcCAAGTTgttatttcaaaaatgacattCCACATGGAAGAAGGCGATCGTTGGTTTGAGCAAGTTCAGTCACAGGTTGAAGAACTCGATGAAGCACTGAGAAAACTGTACTCTGTTACTGAAAGCTTGGTGTCCTCTCGTCGAGATATGACCGTCAGCGGCGAGCAACTTGGAAAGGTATGTT
i caeJap4.Scaffold17966 C 0 I 1278

a score=-681.000000
s ce10.chrX             1130700 6 + 17718866 TCGGAG---
s caeRem4.Crem_Contig24  280026 9 +  1162296 tttttgaag
i caeRem4.Crem_Contig24 C 0 I 116
e caePb3.Scfld02_62      382441 0 -   783054 C
e caeJap4.Scaffold17966  116574 1278 +   140921 I
e cb4.chrX                24308 0 + 21540570 C
e caeSp111.Scaffold514    78474 0 -   141934 C

a score=-12409.000000
s ce10.chrX             1130706 107 + 17718866 TTCAACTTGAAgctactgtgtattagttgccatttctacaactttaaaggagggcgtatttatgcgaaatggtctcgccacgcgccacccattgatttcggggcgcg
s cb4.chrX                24308   8 + 21540570 ------------------------------------------------------CATACTTT---------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    78474  16 -   141934 -------------------------------------------------------ttatttattt--------------------------ttgact----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      382441   4 -   783054 ---------------------------------------------------------------------------------------------GATT----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  116574 1278 +   140921 I
e caeRem4.Crem_Contig24  280035 116 +  1162296 I

a score=-26741.000000
s ce10.chrX             1130813 93 + 17718866 tggcgagaccaatggggcttgcgcggtgagacaatttcgcataaatgcgtccttctcttttaaaatcgtagaagtgaaaaagtacacagtaTT---------------------------------------
s cb4.chrX                24316 10 + 21540570 ---------------------------------------------------------------------------------------GTGATGTAAT-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  280151 95 +  1162296 TGACAAAATC------------------AGactatttt-----------tacttttaaGTGGCAGT--TAGATCTCTAA------AAATCATGCAGTTGGATATTCCATTACCGCTTGAAGTACACTTTGCG
i caeRem4.Crem_Contig24 I 116 C 0
s caeSp111.Scaffold514    78490 19 -   141934 ---------------------------------------------------------------------aGATATTGAA-----CAAGTTATT---------------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      382445 18 -   783054 ----------------------------------------------------------------------GATTTTGAA-----GTCGTTGCT---------------------------------------
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17966  116574 1278 +   140921 I

a score=814.000000
s ce10.chrX             1130906 7 + 17718866 GCTTGTA
s caeRem4.Crem_Contig24  280246 7 +  1162296 GCTTGCA
i caeRem4.Crem_Contig24 C 0 I 28
s caePb3.Scfld02_62      382465 7 -   783054 GTTGATA
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17966  116574 1278 +   140921 I
e cb4.chrX                24326 0 + 21540570 C
e caeSp111.Scaffold514    78509 0 -   141934 C

a score=-2745.000000
s ce10.chrX             1130913 35 + 17718866 AACTGCTAAGATAGAAGTCCGGTAGGGGATAGGCC-------
s cb4.chrX                24326  7 + 21540570 ----------------------------CTAAGCT-------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      382472 11 -   783054 -------------------------------AGCCATTAATA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  116574 1278 +   140921 I
e caeSp111.Scaffold514    78509  0 -   141934 C
e caeRem4.Crem_Contig24  280253 28 +  1162296 I

a score=-1587.000000
s ce10.chrX             1130948 25 + 17718866 CACAGCTAATGAAGCCCTGACGCTT
s caeRem4.Crem_Contig24  280281 24 +  1162296 CACACTTAAAAAAG-CTTCCCACTT
i caeRem4.Crem_Contig24 I 28 C 0
s caePb3.Scfld02_62      382483  1 -   783054 ------------------------A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  116574 1278 +   140921 I
e cb4.chrX                24333  0 + 21540570 C
e caeSp111.Scaffold514    78509  0 -   141934 C

a score=-18357.000000
s ce10.chrX             1130973 40 + 17718866 ATCCCTTTTTC--------AAAACCAAATCTTAAT----------------------------TCATTTC---------------------TCATTC
s cb4.chrX                24333 16 + 21540570 ---------------------------------------------------------------CCAATTTCCAA-----------------TTGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  280305 85 +  1162296 CTCCAGTT-----------ATAACCTCCGGTGCTCAAAAACTAATACTACccccctcttttttccattttctagctttcattttctgttttttttt-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      382484 31 -   783054 TTCCTGTT-----------GACACCTTAcatgaat----------------------------atatttt---------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  117852 41 +   140921 ATCCTCcttccaataaaaaaaagcaatatattgtt----------------------------ttgttt----------------------------
i caeJap4.Scaffold17966 I 1278 C 0
e caeSp111.Scaffold514    78509  0 -   141934 C

a score=380538.000000
s ce10.chrX             1131013 482 + 17718866  
s cb4.chrX                24349 482 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  280390 482 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    78509 482 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      382515 482 -   783054  
i caePb3.Scfld02_62     C 0 I 50
s caeJap4.Scaffold17966  117893 536 +   140921  
i caeJap4.Scaffold17966 C 0 C 0

a score=575.000000
s ce10.chrX             1131495 2 + 17718866 AA
s cb4.chrX                24831 1 + 21540570 -A
i cb4.chrX              C 0 I 1399
s caeRem4.Crem_Contig24  280872 1 +  1162296 -a
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514    78991 2 -   141934 TA
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966  118429 2 +   140921 aa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      382997 50 -   783054 I

a score=600.000000
s ce10.chrX             1131497 1 + 17718866 G
s caeRem4.Crem_Contig24  280874 1 +  1162296 g
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    78993 1 -   141934 G
i caeSp111.Scaffold514  C 0 I 139
s caeJap4.Scaffold17966  118431 1 +   140921 g
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      382997 50 -   783054 I
e cb4.chrX                24832 1399 + 21540570 I

a score=-775.000000
s ce10.chrX             1131498 3 + 17718866 -GTT
s caeRem4.Crem_Contig24  280875 2 +  1162296 -gt-
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966  118432 3 +   140921 ttt-
i caeJap4.Scaffold17966 C 0 n 0
e caePb3.Scfld02_62      382997 50 -   783054 I
e cb4.chrX                24832 1399 + 21540570 I
e caeSp111.Scaffold514    78994 139 -   141934 I

a score=995.000000
s ce10.chrX             1131501 70 + 17718866 CCAGCAGGCTTTGTGTGGTTTAAAAATACTGCGAAATCTTTATTCAAATCCAGAAAACCAT-----CAAAAAATG
s caeRem4.Crem_Contig24  280877 61 +  1162296 -----agtttttgt---------aaTTAGTGGGAAAGttgttttgatatcaaaaaaacaacaataacaaaaaatg
i caeRem4.Crem_Contig24 C 0 I 603
e caePb3.Scfld02_62      382997 50 -   783054 I
e caeJap4.Scaffold17966  118435  0 +   140921 I
e cb4.chrX                24832 1399 + 21540570 I
e caeSp111.Scaffold514    78994 139 -   141934 I

a score=0.000000
s ce10.chrX             1131571 731 + 17718866  
e caePb3.Scfld02_62      382997  50 -   783054 I
e caeJap4.Scaffold17966  118435   0 +   140921 I
e cb4.chrX                24832 1399 + 21540570 I
e caeSp111.Scaffold514    78994 139 -   141934 I
e caeRem4.Crem_Contig24  280938 603 +  1162296 I

a score=752.000000
s ce10.chrX             1132302 13 + 17718866 AAAAACACTTAAA
s cb4.chrX                26231 13 + 21540570 aaaaacccctAGA
i cb4.chrX              I 1399 C 0
e caePb3.Scfld02_62      382997 50 -   783054 I
e caeJap4.Scaffold17966  118435  0 +   140921 I
e caeSp111.Scaffold514    78994 139 -   141934 I
e caeRem4.Crem_Contig24  280938 603 +  1162296 I

a score=224.000000
s ce10.chrX             1132315 31 + 17718866 -----AATTTGCTTATTCAAAAGCTCTACTAAAAAT
s cb4.chrX                26244 34 + 21540570 AGTCAAATCAGCCCTTTTAAAAAT--AGGCTAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  281541 31 +  1162296 -----AATCTACTTTTCTAGAAACTAAtgctatttt
i caeRem4.Crem_Contig24 I 603 C 0
e caePb3.Scfld02_62      382997 50 -   783054 I
e caeJap4.Scaffold17966  118435  0 +   140921 I
e caeSp111.Scaffold514    78994 139 -   141934 I

a score=-1478.000000
s ce10.chrX             1132346 2 + 17718866 TT-
s cb4.chrX                26278 2 + 21540570 -TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  281572 2 +  1162296 -ca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79133 2 -   141934 TT-
i caeSp111.Scaffold514  I 139 C 0
e caePb3.Scfld02_62      382997 50 -   783054 I
e caeJap4.Scaffold17966  118435 0 +   140921 I

a score=32732.000000
s ce10.chrX             1132348 52 + 17718866 TTCCAGCTGCTCCATTTGTGGGAGAAGTTCGAGCCGGAAGCCAACAACATTC
s cb4.chrX                26280 52 + 21540570 TTACAGATGCTTCAACTCTGGGAGAAATTTGAGCCACAAGCTCATAACATCC
i cb4.chrX              C 0 I 300
s caeRem4.Crem_Contig24  281574 52 +  1162296 tttcagatgcTCCAACTCTGGGAGAAATTTGAGCCACAAGCTCACAACATCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79135 52 -   141934 TTTCAGATGCTTCAACTTTGGGAAAACTTCGAGCCACAAGCTAATAACATCC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      383047 52 -   783054 TTTCAGATGCTTCAACACTGGGAGAAGTTCGAGCCGATTGCCCAGAACATCC
i caePb3.Scfld02_62     I 50 C 0
e caeJap4.Scaffold17966  118435  0 +   140921 I

a score=-1860.000000
s ce10.chrX             1132400 16 + 17718866 GTGTCTAACCTACCAC-----------
s caeRem4.Crem_Contig24  281626 27 +  1162296 AAGTCTAACCATCCAGACCCACCCATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79187  8 -   141934 AAGTCTGA-------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      383099 20 -   783054 AAGTCTAAGCACCCTA--CGAC-----
i caePb3.Scfld02_62     C 0 I 1874
e caeJap4.Scaffold17966  118435  0 +   140921 I
e cb4.chrX                26332 300 + 21540570 I

a score=-865.000000
s ce10.chrX             1132416 55 + 17718866 TAGTGT--AAATTATTC-ATCCTTATTTATTGCCAA---------------AATCAATCAAACTCCTCAAAAT
s caeRem4.Crem_Contig24  281653 69 +  1162296 --TCGTCAATATCATC--AACTCCACATGTCCTCAACACCCACACCCGCCTTATCAACTACTCTCTGTAAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79195 55 -   141934 ----GT--ATATTATTCAAGTCCCAATTTTGATCAA-----------GCCATA-CAATCACACCCCTTCGAAT
i caeSp111.Scaffold514  C 0 I 322
e caePb3.Scfld02_62      383119 1874 -   783054 I
e caeJap4.Scaffold17966  118435  0 +   140921 I
e cb4.chrX                26332 300 + 21540570 I

a score=1613.000000
s ce10.chrX             1132471 148 + 17718866 GTCAATTTTATATTATTTTGTGCAC----------TCCCCCTCTCCCCAGTCG--AAATTTTATTATCTGTGATTTGAATGCAAAACTTCTAAAAATCCCCGTTTGATTTTGTTTCCTACCAACTACATATAGTCATTATTATATTTTATAACTTATTCT
s caeRem4.Crem_Contig24  281722 146 +  1162296 GTCACTTATTTATTGTAGTCTTACCATCAAAATTGTCTATTGCACCCCAGTTATTAAAATTGTTTATCTGTGATTTGACTGGAA---TTCTAACAGT---TGGTTTATTGTATGTC------ATGAAACATAAT--TTATTATACATTTCAACTTGGCCT
i caeRem4.Crem_Contig24 C 0 I 80
e caePb3.Scfld02_62      383119 1874 -   783054 I
e caeJap4.Scaffold17966  118435   0 +   140921 I
e cb4.chrX                26332 300 + 21540570 I
e caeSp111.Scaffold514    79250 322 -   141934 I

a score=0.000000
s ce10.chrX             1132619 377 + 17718866 CTCCATCACATTTCACCTCGTCTTCATAATGTCTTCACAAAAATATCTATTGGTTTCTTTGTTTTTGGATATAAAGAGCTTCTTGTCAGATTCGGCAAAAAATGAGACTGTTTCTTCTGGCTACGGATTCCTGTCAGCTTCATATTTAACAGAAATTCAACTGATCAATTCACAGAGCCAGATTTATGTCGGCTGCTCAAATTTCGCTAAACGGCTTCGGCCTATGCTTGTCTTCAGATCATGCTCAAGTGTCGGACTCGGATTTGTGTCTGCTGCCAATTTTGCATACCTCAATTCAAATTGGCTTCTCAACTTGCGCGCCCTGATTTAAAAAACCTTGATCTTTGTTGGCTTTTAGAAACTTGAAAATGTTTGGT
e caePb3.Scfld02_62      383119 1874 -   783054 I
e caeJap4.Scaffold17966  118435   0 +   140921 I
e cb4.chrX                26332 300 + 21540570 I
e caeSp111.Scaffold514    79250 322 -   141934 I
e caeRem4.Crem_Contig24  281868  80 +  1162296 I

a score=543.000000
s ce10.chrX             1132996 47 + 17718866 TTTCTTATTTATTTCAACTTCTATAACAAATGACAATTTGCAAGATG
s caePb3.Scfld02_62      384993 43 -   783054 TTTCATGtttattatcattttcaaagcaCATATaaacatccaa----
i caePb3.Scfld02_62     I 1874 C 0
e caeJap4.Scaffold17966  118435  0 +   140921 I
e cb4.chrX                26332 300 + 21540570 I
e caeSp111.Scaffold514    79250 322 -   141934 I
e caeRem4.Crem_Contig24  281868 80 +  1162296 I

a score=1344.000000
s ce10.chrX             1133043 17 + 17718866 ATATTTAAAAAA-AAAAG
s caePb3.Scfld02_62      385036 16 -   783054 --atccaaaaaataacaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   27272 17 -   140921 ATattcaacaaa-acaaa
i caeJap4.Scaffold17966 I 6450 C 0
e cb4.chrX                26332 300 + 21540570 I
e caeSp111.Scaffold514    79250 322 -   141934 I
e caeRem4.Crem_Contig24  281868 80 +  1162296 I

a score=-3546.000000
s ce10.chrX             1133060 43 + 17718866 ----AAAATAAC-AAATAGTATAAAGTAT----TCACAAGATATCTATATAT
s caeRem4.Crem_Contig24  281948 45 +  1162296 ----agAGTAACTAAATAGTGGAacacataaaatttcaaaat---tatatat
i caeRem4.Crem_Contig24 I 80 I 3
s caePb3.Scfld02_62      385052 29 -   783054 -------------aaaatttcaaaaatataaagttACAAGAT----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   27289 41 -   140921 aacaaaattagttAAGGTCTAAAACAATTCGAGTTATGAAT-----------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                26332 300 + 21540570 I
e caeSp111.Scaffold514    79250 322 -   141934 I

a score=914.000000
s ce10.chrX             1133103 4 + 17718866 CTAT
s caeRem4.Crem_Contig24  281996 4 +  1162296 CTAT
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514    79572 4 -   141934 CTAC
i caeSp111.Scaffold514  I 322 C 0
s caePb3.Scfld02_62      385081 3 -   783054 -CAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   27330 3 -   140921 -CAT
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                26332 300 + 21540570 I

a score=60163.000000
s ce10.chrX             1133107 183 + 17718866 AACTTGTTT--GGGAACGTGAGCTGCCAGGCCGTGTATTCTGAAA-TT-----GAATTTTGTGtttatatattttttgttttta-ataaaataCCATTTGAAATCCAATCCACAAA---TCCGCCTAATCGATCACCGTTCAAATATAAGTCAGGGCTGTGGGCCACTCTATCAGAGGTCAGTTGTGTTCCGAGA
s cb4.chrX                26632 180 + 21540570 AAATTGTCTCCGGGAAAGTCAATGCCCAGGCCAtgtattctgaaa-ac-----aataatttaAAATACGTTTAAGACGATTTCA------CTACCTTTAGAAATCCACGGTTCGAG---TCCATTTAATCGTGAGTTTCCGTACTGCAAATCGGGACTGTGTGCTACTCTGTCGGAGCCCATTTGCGTTCCAAGA
i cb4.chrX              I 300 C 0
s caeRem4.Crem_Contig24  282000 185 +  1162296 GATTTGTTT--GGAAACGTCAGAGACCAGGCGGCGTATTCTGAAAGAT-----AAAAGTTGCAAATTTGAAAAGGCCgcttcaaaaaaacttaccatTCGAAATCCAGGGCTCCAA---CCCATTGAGCCTAACACTTCCATATTGCAAATCAGGGCTATGCGCTACTCTATCAGATGTCAGTTGTGTTCCGAGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79576 176 -   141934 GATTTATCA--GGGAATGTCAGCGTCCATGCAgcatattctgaaa-a------aaaagtcagaaCTTTGGAGCACTCA-------GGAACCCACCGTTTGCAATCCAGTCTTTGAG---CCCATATAAATTGGTACTGTCGTATTGCACATTTGGGCTGTGTGCAACTCTATCCGAGGTCACCTGTGTTCCAAGA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      385084 179 -   783054 GATTTGTCC--GGAAAAGTTAGTGTCCAGGCCgagtattctgaaa-at-----aaaactc----ttTCTGTATATACAACT-AACAAAACAAACCATTTGATATCCAAGCCTCAAA---TCCATCCATTCCAGGGCTACCGTATCTTAAATCAGGACTATGTGCTACTCTATCAGAGACTAGTTGAGTTCCCAGG
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   27333 183 -   140921 GATTTATCC--GGAAACGTTGTCGACCAAGCCGAGAACtctgaaa-atgtaaaaaaaattgttttttttttctgtt---------gaacCTTACCGTTTGAAATCCATGAGAACAATTTTCCTTGAGCTTCGCTATTATCAAAACTTAATTCTGGATTGATTGCAACTCTGTCTGTGAATAGTTTTGTTCCGAGA
i caeJap4.Scaffold17966 C 0 C 0

a score=-237.000000
s ce10.chrX             1133290 3 + 17718866 ACC
s cb4.chrX                26812 3 + 21540570 ACC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      385264 2 -   783054 AT-
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   27516 3 -   140921 Acc
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    79752 0 -   141934 C
e caeRem4.Crem_Contig24  282185 0 +  1162296 C

a score=273.000000
s ce10.chrX             1133293 1 + 17718866 T
s cb4.chrX                26815 1 + 21540570 T
i cb4.chrX              C 0 I 35
s caeJap4.Scaffold17966   27519 1 -   140921 t
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      385266 0 -   783054 C
e caeSp111.Scaffold514    79752 0 -   141934 C
e caeRem4.Crem_Contig24  282185 0 +  1162296 C

a score=212.000000
s ce10.chrX             1133294 17 + 17718866 GCATATTGACAATTTTT
s caeJap4.Scaffold17966   27520 15 -   140921 gtaaa--aataatttct
i caeJap4.Scaffold17966 C 0 I 56
e caePb3.Scfld02_62      385266  0 -   783054 C
e cb4.chrX                26816 35 + 21540570 I
e caeSp111.Scaffold514    79752  0 -   141934 C
e caeRem4.Crem_Contig24  282185  0 +  1162296 C

a score=0.000000
s ce10.chrX             1133311 364 + 17718866 AGTATTAGAGAGTATGGCATTTATTGCCCAGGAGATTTGGAAAAGTGGTCATGTTGCATCAACTTTCAGTTTCAAATGTTTTGCTAACTATAGAAATTTAAAAAAAAATTCCACCTAATATTAATTAATTTTCTACTGACGAAAAATGTATTTTTATAAACTTGTAGTTTAGAAAAAAACTATTAAAACGAATTTTATGAATAGAAAATAATTTGTCAATTTTCAGTTGATTCAAAAAAAAAATTCACAAACAGTTTTCGATGCACCATAACTGAATTTTTAATTTTCCCACACTTTTCTAGTATAAACTTTCAATTTTTCAACCAAGTTGCAATTTTCCAAAGTAACATAGATTCAACCTTCA
e caePb3.Scfld02_62      385266   0 -   783054 C
e caeJap4.Scaffold17966   27535  56 -   140921 I
e cb4.chrX                26816  35 + 21540570 I
e caeSp111.Scaffold514    79752   0 -   141934 C
e caeRem4.Crem_Contig24  282185   0 +  1162296 C

a score=200.000000
s ce10.chrX             1133675 2 + 17718866 GC
s caeJap4.Scaffold17966   27591 2 -   140921 gc
i caeJap4.Scaffold17966 I 56 C 0
e caePb3.Scfld02_62      385266 0 -   783054 C
e cb4.chrX                26816 35 + 21540570 I
e caeSp111.Scaffold514    79752 0 -   141934 C
e caeRem4.Crem_Contig24  282185 0 +  1162296 C

a score=-942.000000
s ce10.chrX             1133677 11 + 17718866 --TCAAAAAAGT----T
s cb4.chrX                26851 15 + 21540570 --ttaaaaaattattat
i cb4.chrX              I 35 C 0
s caeJap4.Scaffold17966   27593 11 -   140921 ccacaaATAAT------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      385266  0 -   783054 C
e caeSp111.Scaffold514    79752  0 -   141934 C
e caeRem4.Crem_Contig24  282185  0 +  1162296 C

a score=2910.000000
s ce10.chrX             1133688 3 + 17718866 ACC
s cb4.chrX                26866 3 + 21540570 acC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  282185 3 +  1162296 ACC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79752 3 -   141934 ACC
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   27604 3 -   140921 ACC
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      385266 0 -   783054 C

a score=126948.000000
s ce10.chrX             1133691 254 + 17718866 TGTGGTGTATAAGAAAATGTGCTGTTATCAAAGTTTGTCTGAATAACATAAGTTGAGTATCTAGTGTTGAGATGTCTTGATGTTGGACCGTCGATGTTAGGTGAGATTCTGCAAGAAATG----------TATAATTCCTGCTGAAAAACTCTTGAAGCTTACGTCTCTGATCCAGTAATAACAATAATATAGTTGGGCCGGTTAGGATCCACACCAAACTCTGGCTCGTTGAGAATAATTGAGTCGATTCCTCT-----GAAAAAAAA
s cb4.chrX                26869 255 + 21540570 TGTGGTGTATAAGTGTAAGTTGTGTTGTCAAAGTTGGTTTGGATGACAAAAGTTGAGTATCTAGTGTTGAGATGCCTTGATGTTGCGCCATCAATATTTggtgatattctgaaaacaacg---aaattttcaggaattcagtaTAAAGGC-----TAATTTACGTTTGCGATCCAGAAATAACAATTATATAATTGGGTCGGTTGCTAGCCACTCCAAATGACTGCTCATTTAGAATTACAGAATCAATTGCTCT---TCGTAAAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  282188 258 +  1162296 TGTGGTGTGTAGGTATAAGTGGTGTTATCAAAGTTAGTCTGGATAACAAAAGTTGAGTATCTTGTGTTGAGATGTCTTGATGTGGCTCCATCAATGTTCGgggaaatactgaaattttcgttttatatctcataagtttttttttgtgg------taaCTAACGTTTGTGATCCAGTAATGACAATAATATAGTTCGGTCGATTCGGGTCTACTCCGAATTCTTGCTCATTCAGAATAACCGAGTCAATTGCTCT-----GTAAACAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79755 209 -   141934 TGTGACGTATATTGATAGATACTATTATCCGAGTTGGTCTGTATAACAAATGTTGAATATCTAGTGTTGAGGTGTCGTGATGTTGGTCCATCGATGTTTGGGGAAAT-------------------------------------------------------CGACTGTGAACCCGAAATTACAATGATGTAGTTAGGTCGATTGGTATCCACTCCAAATTCTGGTTCTTGTAAAATGACCGAATCAATCGCTCT-----ATAAAGAAC
i caeSp111.Scaffold514  C 0 I 2
s caePb3.Scfld02_62      385266 254 -   783054 TGTGGTGTCCAAGGATAAGTGCTGTTATCAAAGTTTGTTTGTATAACATATGTTGAGTATCTAGTGTTGAGATGACGTGATGTTGGTCCATCAATGTTTGGAGTTAtactgaaaagaaag--aaagatgtCATGAGAGTTGTTAATAGA------ATATATACGTTTGTGATCCAGTGATAGCAATAATGTAGTTTGGTCGACTGGTGTCCACTCCAAAGTTGACTTCATTCAGAATAACAGAGTCGATGGCTCT-----GCAA--AAC
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17966   27607 255 -   140921 TGTGAACAATATGAAAATGTAGAATTATCGTTATTCGTTTGCATAACAAATGTTGAGTATCTTGTATTGAGATGCCTTGACGTGGCGGTGTCGATGGTTGGAGAAATactgaaaattatt-tcaaattttcattcgTTTCTTTTAGT--------TGTTTTACGTCAGAGAAGAAGCAATATCAATTATGTATTCCGGCCGATTATAATCCACTCCAAAATCTCCTTCGTTCAGTATAATTGAGTCAATAGCTCTGAAGCGTAA-----
i caeJap4.Scaffold17966 C 0 C 0

a score=-11435.000000
s ce10.chrX             1133945 49 + 17718866 GTGTATATTTGAATTTTTATTTTGCCAGTTTTTTTTTCTAAAAGCTTAA
s cb4.chrX                27124 32 + 21540570 -----------------TACTTGAACCAGAATCTGATGTAacaatttgg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    79966 26 -   141934 --------------TATTATATAAGCGA---------GTAATTACTTAA
i caeSp111.Scaffold514  I 2 C 0
s caePb3.Scfld02_62      385522  9 -   783054 --------------GATGATATT--------------------------
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17966   27862 12 -   140921 -------------TTATTAGATGAA------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  282446  0 +  1162296 C

a score=-10692.000000
s ce10.chrX             1133994 69 + 17718866 AAGCTCTTCTTCTCAACTCTTCTCAACTTCTCCCCACAAATTTCAGAGCA--------TTGCAAGTCTAATTTTACA
s cb4.chrX                27156 22 + 21540570 --------------------------------------aat-----------------ttggaaatttgatttttta
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      385531  9 -   783054 -----------------------------------------------------------CACAAAACA---------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   27874 19 -   140921 ---------------------------------------------AAGCAAAGAAATTGAGCAA-------------
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    79992  0 -   141934 C
e caeRem4.Crem_Contig24  282446  0 +  1162296 C

a score=-15039.000000
s ce10.chrX             1134063 48 + 17718866 TGCTTTGAGATCATGCTCGAAGAATCTACCCAGTTTGTGTTATATACC
s cb4.chrX                27178 21 + 21540570 -------------------gagaaataA-------TGTCCTGCAAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  282446 33 +  1162296 TACTATTAGA------TTGATCAGCTGA-------TGT-TTATAATA-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      385540 14 -   783054 --------AA------CCCTGAAACTGA--------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   27893  6 -   140921 TGCTTT------------------------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    79992  0 -   141934 C

a score=66264.000000
s ce10.chrX             1134111 221 + 17718866 TACCTTCTCAAGTTGCTTATTCCAGAA---GATGTGGTGATTTGGAAGTTTGAAATCTGAATTCTCAGTGACGTCACATCTTGTAAATCCGTCAAACTCCACAC---------------------------------------------AGTGTTCACGGATCTTCCATATGTCACCACAGCCATCTTCGTATCATTTCCAGTTGATGTAAAGTTACCAACATTAGTGATAAAACTGTTCAAGAAG-TTCTGCACATT-----CTGTGTATAGCC--------------------------------------
s cb4.chrX                27199 200 + 21540570 CGCCT----AAGTTCCAAG---CCGTG---------ttgacctaaaatt------ttttaatctttcTTGA------------Ctagtcttcaaaaattcaagc-----------------------------------tcCGCGTTAGCGTACTCACCGATTTCCCGTATGTGACAAGGGCTAGTTTAGTATCGTTTCCAGATGTTGAAAAGTTTCCAACATTTTCGACAAAACTGTTCAGGAAA-CTTCGAACATT-----TGGAGTAAATCC--------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  282479 264 +  1162296 TACCTTCTCAAATTACTAGTGCCCGTG---GAACCTGTGATTTGGAAGTGTGAAATTTGACTCTTAATTGAAATAACATCTTGCAAGTCTGTCAAACTCCAAACAGTGTTGACct--gaaaaaagtggtcgaatttcaattattataAATCTACTTACGGCTCTTCCATAACTGACAACTGCAAGTTTAGTGTCGTTTCCAGATGATGAGAAGTTTCCGACATTATCCACAAAACTGTTAAggaaa-ttttgcacatt-----ttgagTGAAACC--------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    79992 222 -   141934 TACCTTCTCAAATTACTCGCCCCTGAA---GACGTTTGGAtttggaaattggaaatctGTGCTTTGAGTGAAGTTATATCTTGCAAGTCATTCAAACTCCATGC---------------------------------------------TGTGCTCACTGTTTTCCCATAGCTAACAACTGCCAGTTTTGTCAAATTACcagacgaagaaaaatttccaacATTGTCAAcgaaatcattcaaaaaactgtttaatGTT-----TGGAGTGAAACT--------------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      385554 221 -   783054 TACCTTCTCAAATTACTGGGACCCGTT---GAAGTTTGTATTTGGAAGttggaaatttggtttttcagagaaactacATCTTGCAAATCACCCAATGTCCAAAC---------------------------------------------GTTGTTAACCGATTTTCCATAACTAACAACTGCCATTTTAGTGTCATTTCCGCTTGTTGAGAAGTTTCCAACTTCAACGATAAACGTGTTTAGGAAG-GATTGCACACT-----TTGAGTGAATCC--------------------------------------
i caePb3.Scfld02_62     C 0 M 5666
s caeJap4.Scaffold17966   27899 311 -   140921 -ACCGTCTCAAGTTAACAGTtccagaagaagaagacgttaTTTGAATTTGAGATATACGGTTTCTAAGTGAGTCAATGTCTTGTGCATTTTGTAAATTCCACAGCGTGGTAGCCTTCAAAAACATTCTTTTCACTGCTCTTTTTGCTATTAATCTTACCGATTTTCCATACACAACCACCGCCATTCTGGTATCATTTCCGCTAGATGAGAAGGTTCCAACATTTGCAGTAAAGTCTAATAAGAAT-TGTTGCACCTTAAAGATTATGTTAAactgttttttgaaaagtattaCGCACTGCTTGGTTTTTACT
i caeJap4.Scaffold17966 C 0 C 0

a score=221288.000000
s ce10.chrX             1134332 1240 + 17718866  
s cb4.chrX                27399 1078 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  282743 1093 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    80214 1012 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   28210 1427 -   140921  
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      385775 5666 -   783054 M

a score=22191.000000
s ce10.chrX             1135572 95 + 17718866 GAAATTGGTGCTTGCTGACTGGTTGTAATTAGCCACGTATAGTTGCTGCCCGGAGAGGAGCTGTTTCGAGTAAGACGTACCGGTAAGACTGAAGA-
s cb4.chrX                28477 95 + 21540570 GTAACTAGAAGCTGTGCTGATATTGTAGTTTGCAGCATACAATTGACAGTTGCTGAGCAGTTGCTTGGAATACGATGTACCGGTGAGactgaaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  283836 95 +  1162296 GAAACTAGAGCTGGAGGAGATattatagttgacaacataAAGTTGACTGTTTTTCAGTAGTTGTTTTGAGTAAGCTGTTCCAGtcagactgaaaa-
i caeRem4.Crem_Contig24 C 0 I 36
s caeSp111.Scaffold514    81226 89 -   141934 gaaattgaagtttgaaTCCATTTTATAGTTGACAACATAGAGATTATATCCACCTAAAAGCTTATTTGA------TGCGCCTGTCAGACTGAAAT-
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      391553 88 -   783054 GAAATTGAAGTTAG-ATGCGCattgtagttgatcacatACAAGGTATTGCCTCCTAACTGTTTGTTAGA------AGCTCCAGTCAAGCTAAACA-
i caePb3.Scfld02_62     M 5666 I 1
s caeJap4.Scaffold17966   29637 96 -   140921 GAAATCAGTGTTGTTCGCTATGTTGTAGCTAGCAACGTACAAGTTAGATCCATTCAATAACTGTTGAGCAAGTTCGGTACCAGTTACACTAAAAta
i caeJap4.Scaffold17966 C 0 C 0

a score=-7180.000000
s ce10.chrX             1135667 37 + 17718866 ----ATGTTATTTTGAAACGGGCAAATTAATTTTGAAA----AAC--------
s cb4.chrX                28572 23 + 21540570 ----atatcattt--------------tcatGACAAGT----ATT--------
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold514    81318 29 -   141934 ----ATCTTGATT------------AACAGTGTCAAAATATGGTT--------
i caeSp111.Scaffold514  I 3 I 9
s caePb3.Scfld02_62      391642 25 -   783054 ----ATATGAATT------------GATTACTTCACAA----ATT--------
i caePb3.Scfld02_62     I 1 I 7
s caeJap4.Scaffold17966   29733 37 -   140921 atctttaattttt------------aatcatTCTGCAG----AATTCCTTTAC
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  283931 36 +  1162296 I

a score=71190.000000
s ce10.chrX             1135704 135 + 17718866 TTACTTCGTGGATCCAACAACGTAAATAATATA---AGTTGGGCGGTCTGGTTGATTTCCAATCATATTTGACACGTATTGAATTGCATTTCCAACATTGGCTGTGTAGGATGAAGACGACATTGAGGACTTCCATGA
s cb4.chrX                28607 135 + 21540570 CTACTTTGACCCTCCAATTACGTAAACAATATA---AGTGGGCCGATCTTCAGTGGTTCCAATCATATTAGAAACATATTGAATTGCACTTCCAACATTTGCAGTGTATGACGATGAAGAAAGTGATGATTTCCATGA
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24  283967 135 +  1162296 TTACTTTGTAGCTCCAACAACATAAATTACGTA---AGTTGGTCTGTCTTGTGTAGCTCCAATCATGTTCGACACATATTGAATAGCAGCTCCAACATTGGCTGTGTTAGAGGAAGATGATAAAGATGACTTCCAAGA
i caeRem4.Crem_Contig24 I 36 C 0
s caeSp111.Scaffold514    81356 138 -   141934 CTACTTTGTGGCTCCAACTACATATACAACATGAGTTGGTGGTGGGCTTGGATCATTGTGAAGCATGGTCGAGACGTAAGAAATCGCATTTCCAACATTCGCAGTTGCTGACGAGGGTGATAGAGATGAATTCCAGAC
i caeSp111.Scaffold514  I 9 C 0
s caePb3.Scfld02_62      391674 135 -   783054 TTACTTTGTTGCTCCAACTACATAAATAATATG---TGTCGGTCTGTCAGGAGTATTTCCGATCATATTTGATACGTATGTGATGGCGTTACCAACGTTTGCAGAGTAAGATGAAGAGGACAGAGAAGATTTCCATGA
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold17966   29770 135 -   140921 TTACTTCGCTGATCCCAGCACGAAAACTACATG---AGTCGGTCGGTCATATGTACTTCCCAGCTCGCTGGCAGCGAATTGAATGGCGCTTCCTACATTTGCACTGTAGTCGGATGATGCTGTTGTTAGCTTCCATGA
i caeJap4.Scaffold17966 C 0 I 62

a score=6773.000000
s ce10.chrX             1135839 26 + 17718866 TGTCAGGTATTGATCCACAGCCTGAA
s cb4.chrX                28742 26 + 21540570 ACTAACGTACTGGTCAAGTTCctgaa
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig24  284102 26 +  1162296 TCCAAGGAATTGGTCCACGACCTGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    81494 26 -   141934 ACTTAAATATTGGTCAACAtcctaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      391809 25 -   783054 AGTCAAGTACTGGTCCACAGTCT-GC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   29905 62 -   140921 I

a score=-2361.000000
s ce10.chrX             1135865 6 + 17718866 AAATTT-
s caeRem4.Crem_Contig24  284128 2 +  1162296 ----TT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    81520 6 -   141934 -aaatga
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      391834 6 -   783054 -AGATGA
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966   29905 62 -   140921 I
e cb4.chrX                28768 21 + 21540570 I

a score=-846.000000
s ce10.chrX             1135871 18 + 17718866 CAAAGTTTTCTAAAATAT--------
s caeRem4.Crem_Contig24  284130 24 +  1162296 CGTAGTTT--TAGATTATTAATGTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    81529 14 -   141934 --taaagt--caaaatat--------
i caeSp111.Scaffold514  I 3 I 10
e caePb3.Scfld02_62      391840  1 -   783054 I
e caeJap4.Scaffold17966   29905 62 -   140921 I
e cb4.chrX                28768 21 + 21540570 I

a score=451.000000
s ce10.chrX             1135889 6 + 17718866 GCGGTA
s caeRem4.Crem_Contig24  284154 6 +  1162296 GTGGTA
i caeRem4.Crem_Contig24 C 0 I 6
e caePb3.Scfld02_62      391840 1 -   783054 I
e caeJap4.Scaffold17966   29905 62 -   140921 I
e cb4.chrX                28768 21 + 21540570 I
e caeSp111.Scaffold514    81543 10 -   141934 I

a score=0.000000
s ce10.chrX             1135895 5295 + 17718866  
e caePb3.Scfld02_62      391840    1 -   783054 I
e caeJap4.Scaffold17966   29905   62 -   140921 I
e cb4.chrX                28768   21 + 21540570 I
e caeSp111.Scaffold514    81543   10 -   141934 I
e caeRem4.Crem_Contig24  284160    6 +  1162296 I

a score=334.000000
s ce10.chrX             1141190 28 + 17718866 TACAAGCTTCAACATGAAAAAGTGCACT
s caePb3.Scfld02_62      391841 25 -   783054 TACAATTTTTAGTACGGTAAATC---CT
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17966   29905 62 -   140921 I
e cb4.chrX                28768 21 + 21540570 I
e caeSp111.Scaffold514    81543 10 -   141934 I
e caeRem4.Crem_Contig24  284160  6 +  1162296 I

a score=-37.000000
s ce10.chrX             1141218 7 + 17718866 GAAAAAC
s cb4.chrX                28789 7 + 21540570 GAAGTAC
i cb4.chrX              I 21 C 0
s caePb3.Scfld02_62      391866 4 -   783054 GAAA---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   29905 62 -   140921 I
e caeSp111.Scaffold514    81543 10 -   141934 I
e caeRem4.Crem_Contig24  284160 6 +  1162296 I

a score=640.000000
s ce10.chrX             1141225 4 + 17718866 AACC
s cb4.chrX                28796 4 + 21540570 AATC
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold514    81553 4 -   141934 aact
i caeSp111.Scaffold514  I 10 C 0
s caePb3.Scfld02_62      391870 2 -   783054 --CT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   29905 62 -   140921 I
e caeRem4.Crem_Contig24  284160 6 +  1162296 I

a score=14646.000000
s ce10.chrX             1141229 44 + 17718866 TACCAGCTGTGATGAAGAGAGTTGCAATGGAGCAATGACATTGT
s cb4.chrX                28802 44 + 21540570 TACAAGAGGTGATGACGTGAGTGACAGTGCAGAAATTACACCAT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  284166 44 +  1162296 TACTAGTGGAGAAGCCGTGAGTTGCAATGGGTCGATGACATTAT
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold514    81557 44 -   141934 agCCATCTGCGAAGAAGACAGTGGCAACGGTGAAATCACAGTGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      391872 44 -   783054 AACAGTCTGTGAAGAAGTAAGTTGCAAAGGAGAAATGACATCAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   29905 62 -   140921 I

a score=24060.000000
s ce10.chrX             1141273 36 + 17718866 CAGAGAATGGCACAATACTGATTTGAGTTCTGTAAA----
s cb4.chrX                28846 34 + 21540570 CGGAGAAAGGAACGATGCTGATTTTTGTCCTCAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  284210 34 +  1162296 CCGCAAATGGCACAATACTGATTTGTGTTCTGAA------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    81601 36 -   141934 CAGCAAACGGCACAATACTGATTCGAGTTCTGAAAg----
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      391916 36 -   783054 CCGCAAATGGTACAATACTGATTTGAGTTCTATAAA----
i caePb3.Scfld02_62     C 0 I 29
s caeJap4.Scaffold17966   29967 40 -   140921 CAGCAAATGGAACAATACTAATTTGAGTCCTAAACCAGAA
i caeJap4.Scaffold17966 I 62 C 0

a score=-10723.000000
s ce10.chrX             1141309 38 + 17718866 ACTTTTTCCAGTTAAACTAAATACCAAACTCCTAAAAA
s cb4.chrX                28880 32 + 21540570 AT---ATAAAGTTACAATCAATA---TActactatttt
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24  284244 32 +  1162296 TTTCGGTTAACTTATAATTCGT------TTTGTAAATT
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold514    81640 29 -   141934 --------actttttcatttaaacC-TATTACTGTATC
i caeSp111.Scaffold514  I 3 I 2
s caeJap4.Scaffold17966   30007 27 -   140921 -----ATTTAGTTGAGTTAGAAA---AACTATTTA---
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      391952 29 -   783054 I

a score=388379.000000
s ce10.chrX             1141347  901 + 17718866  
s cb4.chrX                28915  990 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24  284279  980 +  1162296  
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514    81671  946 -   141934  
i caeSp111.Scaffold514  I 2 C 0
s caePb3.Scfld02_62      391981 1124 -   783054  
i caePb3.Scfld02_62     I 29 I 33
s caeJap4.Scaffold17966   30034 1006 -   140921  
i caeJap4.Scaffold17966 C 0 C 0

a score=-1323.000000
s ce10.chrX             1142248 6 + 17718866 GGGATG--
s caeSp111.Scaffold514    82617 5 -   141934 -agttc--
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   31040 6 -   140921 --GTTTTG
i caeJap4.Scaffold17966 C 0 I 74
e caePb3.Scfld02_62      393105 33 -   783054 I
e cb4.chrX                29905 0 + 21540570 C
e caeRem4.Crem_Contig24  285259 0 +  1162296 C

a score=-3278.000000
s ce10.chrX             1142254 25 + 17718866 TGGCAACTAGAGTTGAT---GG-------------------TGGGAC
s cb4.chrX                29905 20 + 21540570 -----ACTATGATTTGT---GG-------------------CGGAAC
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig24  285259 37 +  1162296 -------tagaaataga---gagaTTTCNNNNNNNNNNaaTAGAAAC
i caeRem4.Crem_Contig24 C 0 I 32
s caeSp111.Scaffold514    82622 28 -   141934 tATTCAATATAATTCAATTCTA-------------------GGAAAC
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      393105 33 -   783054 I
e caeJap4.Scaffold17966   31046 74 -   140921 I

a score=43826.000000
s ce10.chrX             1142279 93 + 17718866 TTACGTTGAAGTGGAAGGTAAATGCAAGTATGTTGAGTGAGGGAGTTGGCCAGTTGTCTCACTGAGTATTTGTTGTAGCCGCTGAGCTGGAAT
s cb4.chrX                29938 93 + 21540570 ATACGTTGCATTGGAAGATAGGTGCAAGTGTGTTGAGTAAGAGAGTTGGCGAGTTGCCTGTTAGAGTATTTGTTGTTTATGTTTAGCTGAAAT
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig24  285328 93 +  1162296 TTACGTTGGAGTGGTAGATAAGTGCATGTGTGCTGAGTGAGGGAGTTGGCCAATTGTCGGATAGTATATTTGTTGTTTCcatttaactgaaat
i caeRem4.Crem_Contig24 I 32 C 0
s caeSp111.Scaffold514    82650 89 -   141934 TTACGAAGTAACGGAAGGTAGACACAAGTATGTTTGGTTAAAGAGTTAGCAATCTGTCTCATAGAGTACTTGTTGTATCCGTTCAACTA----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393138 93 -   783054 TTACGTTGTAATGGGAGGTAAGTGCATGTATGTTGAGTCAATGAATTGGCGAGCTGTCTGACCGAGTATCGGTTGTTTGcgttgagctgaaaa
i caePb3.Scfld02_62     I 33 C 0
e caeJap4.Scaffold17966   31046 74 -   140921 I

a score=-225.000000
s ce10.chrX             1142372 22 + 17718866 AAATTACTGTGAGTTGGTTAGC
s cb4.chrX                30031  9 + 21540570 -------------TTATATAAC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      393231  0 -   783054 C
e caeJap4.Scaffold17966   31046 74 -   140921 I
e caeSp111.Scaffold514    82739  0 -   141934 C
e caeRem4.Crem_Contig24  285421  0 +  1162296 C

a score=-11050.000000
s ce10.chrX             1142394  59 + 17718866 CAAACACTGAAATGTTAGGTCAGGCACGGACAAGCC--------CAGATGTATATTTG----------------------------------TTCACATTT
s cb4.chrX                30040  14 + 21540570 TAAATA---------------------------------------------------------------------------------------TTACGTTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      393231   3 -   783054 --aat------------------------------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   31120 101 -   140921 cgaacacagtgatatttgaagagacgcagacagaacggtgaatgcagacttccGTTTTCATGTCTCAAGtcgattggaaacacaataTAGACTTTATATTT
i caeJap4.Scaffold17966 I 74 C 0
e caeSp111.Scaffold514    82739   0 -   141934 C
e caeRem4.Crem_Contig24  285421   0 +  1162296 C

a score=-2940.000000
s ce10.chrX             1142453 33 + 17718866 TGAATACTAATCTAAGTGCTAGAGTTGCAATAT
s caeSp111.Scaffold514    82739 17 -   141934 TAAAACATAATTTTA----TA------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393234 19 -   783054 tgaaaaaaaattcaa----taaa----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   31221 29 -   140921 tgactttttatttat----ttcaatttcCATAT
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                30054  0 + 21540570 C
e caeRem4.Crem_Contig24  285421  0 +  1162296 C

a score=-25054.000000
s ce10.chrX             1142486  83 + 17718866 ----TTT---CTGTGCCTAATAGTATA--------------ATT---TTCGAATC-----------------------TATCGCATCTATCACATCACAACCTCACAAAAACCTTATTATAGAAAATTCG
s caeRem4.Crem_Contig24  285421  30 +  1162296 ----ttt---ctgaa--tttttatctA--------------ATCCTTCGTGAA-----------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    82756  18 -   141934 --------------------TCGTCTA--------------ATC---CATGAATC---------------------------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393253  20 -   783054 ------------------actcGCTTG--------------AGA---TGTGGAAT---------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   31250 109 -   140921 CATCTTTACCTTGTACGGGTTTGTATACACAATTATTCTGGGTC---AACGAATTAGCAAGTTTTCTTCGAGTATATCTGTTGTAACTATCaagctgaaaataaataaataa------------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                30054   0 + 21540570 C

a score=98036.000000
s ce10.chrX             1142569 191 + 17718866 GGATAGGACAGATTTGAAAATCCCTA-------CTTCATTTTTCCATCAT-----TTACCTGATATGCATTAATATTGACTTGATAATCAGCTCCCGGAATAGTGTTTGTATTGATTGTGAGAGCAGATGTGTAACCTCCAACAAGCTGAACCATGGCGTCGTGCTCCGAGAATGCATTCTCCATGTCACTAATGCTGAAATC
s cb4.chrX                30054 150 + 21540570 AAATAAGA-----------------------------------------------TTACCT------GATTGATATTAATTTGGTAATCTGCTCCTGGAATAGTGTTTGTGTTGATTGTCAAAGCAGATGTGTATCCTCCAACAAGCTGAACCATAGCATCGTGTTCCGAAAACGCGTTTTCCATATCACTGATACTGAAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  285451 149 +  1162296 GAATAGGA------------------------------------------------TACCTGGAACGGATTGATATTAACTTGATAGTCAGCTCCTGGGATTGAAGTGGTATTGATGGACAAGGCAGATGTGTATCCTCCAACCAACTGTACCATAGCATCGTGTTCAGAGGATGCGCTCTCCATGTCGCTGATGC------T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    82774 147 -   141934 --------------------------------------------------------AACCTGTCCGGGTTTCACATTTATTTGATAATCTGCTCCTGGAATAATGTTTGTGTTGATGGTAAGAGCAGATGTGTATCCTCCAACAAGTTGGACCATGGCATCATGCTCAGAGAATGCGTTTTCCATGTCAGAAATACTGAAATT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393273 146 -   783054 ---------------------------------------------------------ACCTGTCCAGCTTTCACGTTAATTTGATAGTCAGCTCCTGGAATTGTGTTGGTGTTGATTGTCAAGGCTGAAGTGTATCCTCCAACTAGTTGGACCATCGCATCATGCTCGGAAAATGCATTTTCCATGTCACTTatgctgaaaac
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   31359 185 -   140921 ------------------aaacactgGTAAACCCCTTATTTTTAAAGCTTCGTCCCAACCTGAGATGGATCAATATTGATTTGATAATCAGCTCCAGGAATTATATCCGTATTTATGGCTAATGCAGTGGTGTAGCCTCCAACCAACTGGGTCATTGCGTCGTGCTCCGAAAACGCATCTTCCAGATCACTTATgcttaaatt
i caeJap4.Scaffold17966 C 0 I 49

a score=-8841.000000
s ce10.chrX             1142760 30 + 17718866 AGTATGGTTAGAATTATCCCCACAGCTTTA--------
s cb4.chrX                30204 29 + 21540570 ACGATACTGAG-ATAATCATTCTGTTTACA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  285600 31 +  1162296 ACAATATTG-------TCATTTTGGTTAAAATTTGttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    82921 11 -   141934 -------------------CTCTATATTTA--------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393419 14 -   783054 a----------------aattctgaaTGCA--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   31544 49 -   140921 I

a score=241981.000000
s ce10.chrX             1142790 560 + 17718866  
s cb4.chrX                30233 518 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  285631 528 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    82932 516 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393433 529 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   31593 502 -   140921  
i caeJap4.Scaffold17966 I 49 C 0

a score=-22798.000000
s ce10.chrX             1143350 116 + 17718866 TTTAGTTTTGATATCAAACTAAATTTAGAGATT---CTAAAATAAGCAGCCGACACTGATCTACGCTCGCGATGGACCAAGTGGGAAAGATCCTCATCAGTTTTAAGACTTTGGAATAC
s caeRem4.Crem_Contig24  286159  27 +  1162296 ----------------------atatcagtCAT---CCAAAATA----------------------------------------------------TCTGTTTT---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    83448  30 -   141934 --------tgtgA------TAAATATGAATAAACTCCCAGACAA---------------------------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      393962  21 -   783054 --------tg----------aacttcgAATGAG-----AAACCA---------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32095  40 -   140921 -------------------acattttaaaataa---ttaaattg--------------------------------------------tGGTTTGCCCTGTTTTAA-------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                30751   0 + 21540570 C

a score=231584.000000
s ce10.chrX             1143466 609 + 17718866  
s cb4.chrX                30751 571 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286186 563 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    83478 552 -   141934  
i caeSp111.Scaffold514  C 0 I 2
s caePb3.Scfld02_62      393983 604 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32135 625 -   140921  
i caeJap4.Scaffold17966 C 0 C 0

a score=189.000000
s ce10.chrX             1144075 2 + 17718866 AC
s cb4.chrX                31322 2 + 21540570 GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286749 2 +  1162296 CC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      394587 2 -   783054 AC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32760 2 -   140921 AT
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    84030 2 -   141934 I

a score=67029.000000
s ce10.chrX             1144077 108 + 17718866 CGGATTGGTTAGGGGCCAGGTTGTCTGGAGATGAGAAGTACACCAATGACACCGACATTTTGAACGGAGAAATCATGGACTGGTAATGGCTCATCACATTCAATACGG
s cb4.chrX                31324 108 + 21540570 CGGACTGGTTTGGAATCAAATTATCAGGAGCAGAGAAGTAAATCATCGACACAGACATTTTGAAGGGTGAAATCATTGATTGATAATAACTCAAGACATTGAGAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286751 108 +  1162296 CGGATTGATTTGGATTCAAGTTATCTGGAGCAGAGAAGTAGATCAAGGACACAGACATTTTGAATGGAGAAATCTGGGACTCGTAGTAGCTCAATAGGTTCAACACAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84032 108 -   141934 CAGATTGATTAGGAACCAAGTTATCCGgagcagaaaaataaattaaagaGATCGACAATTTGAATGGAGAAATTTGTGACTGGTAATAGCTCAAAATATTGAGAACAG
i caeSp111.Scaffold514  I 2 C 0
s caePb3.Scfld02_62      394589 108 -   783054 CAGATTGATTTGGAACAAGGTTGTCCGGGGAAGAGAAGTATATCAAAGAAACAGACATTTTGAATGGAGAGATCATTGCTTGGTAGTAACTCAAGATATTAAGAACGG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32762  93 -   140921 CTGGATTATTCGGGTCAAGGCTGTCGGGCGATGAGAAATAGACAAGAGAAACTGATACT------GGAGCAGT---------GTAGTGGTTCAGAACGTTGATTATAG
i caeJap4.Scaffold17966 C 0 I 50

a score=5647.000000
s ce10.chrX             1144185 11 + 17718866 CACGGGTTTCC
s cb4.chrX                31432 11 + 21540570 CTCTGGTTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286859 11 +  1162296 CTCTGGTTTGc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84140 11 -   141934 CTTTAGTTTCC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      394697 11 -   783054 CACGGGTTTGc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   32855 50 -   140921 I

a score=-2594.000000
s ce10.chrX             1144196 40 + 17718866 -TGGAAATTTTGGTGTAAAAAGTAAGAGATTAGTTAAGATT-
s cb4.chrX                31443 28 + 21540570 -TGGAAACTTATATGTGGAGA------------TTGGAAGC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286870 28 +  1162296 -taaaaagtgtcaaattgaAA------------TCTGGAGT-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      394708 25 -   783054 ttaaaaaatcagattt-----------------tttcaggtt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   32855 50 -   140921 I
e caeSp111.Scaffold514    84151  0 -   141934 C

a score=-1149.000000
s ce10.chrX             1144236 82 + 17718866 GACATCTGTTATGCGTGAATGGAGTCTCAAGACTTGAAATTACAGGAAAATCCAAAAACAGTGCCAAAGTTCTAGAACAATT
s cb4.chrX                31471 15 + 21540570 -------------------------------------------------------AAATA------------TAGAACAATT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      394733  0 -   783054 C
e caeJap4.Scaffold17966   32855 50 -   140921 I
e caeSp111.Scaffold514    84151  0 -   141934 C
e caeRem4.Crem_Contig24  286898  0 +  1162296 C

a score=443.000000
s ce10.chrX             1144318 22 + 17718866 TGGAAGTCAAACACAAAATCTA
s caeRem4.Crem_Contig24  286898 13 +  1162296 ---------AACGTGAAACCTA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      394733  0 -   783054 C
e caeJap4.Scaffold17966   32855 50 -   140921 I
e cb4.chrX                31486  0 + 21540570 C
e caeSp111.Scaffold514    84151  0 -   141934 C

a score=0.000000
s ce10.chrX             1144340 32 + 17718866 GAAAAAAATAGTGTTATAATCTATATACATAA
e caePb3.Scfld02_62      394733  0 -   783054 C
e caeJap4.Scaffold17966   32855 50 -   140921 I
e cb4.chrX                31486  0 + 21540570 C
e caeSp111.Scaffold514    84151  0 -   141934 C
e caeRem4.Crem_Contig24  286911  0 +  1162296 C

a score=-3962.000000
s ce10.chrX             1144372 168 + 17718866 TTATACTTGTCCGATAACTGTATGTATAAACTGATAATGACAACATATCAGGTGCTAACTATTTAGACTGTAGACCGAATTGCGACATAAGTTATATCCTTGTCTAAATTTATCTTACAGATCATAAGCTATCTTTAACGCCTCAACTTCACGATACCAGAAATGGTG
s caePb3.Scfld02_62      394733  18 -   783054 tcatac----------------------------------------------------------------------------------------------------aatttttct--------------------------------------------------gtg
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   32855  50 -   140921 I
e cb4.chrX                31486   0 + 21540570 C
e caeSp111.Scaffold514    84151   0 -   141934 C
e caeRem4.Crem_Contig24  286911   0 +  1162296 C

a score=-1372.000000
s ce10.chrX             1144540 5 + 17718866 ---AGACA
s caePb3.Scfld02_62      394751 3 -   783054 ---aG--T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32905 5 -   140921 aaaaa---
i caeJap4.Scaffold17966 I 50 C 0
e cb4.chrX                31486 0 + 21540570 C
e caeSp111.Scaffold514    84151 0 -   141934 C
e caeRem4.Crem_Contig24  286911 0 +  1162296 C

a score=143519.000000
s ce10.chrX             1144545 746 + 17718866  
s cb4.chrX                31486 663 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  286911 625 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84151 632 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      394754 649 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   32910 939 -   140921  
i caeJap4.Scaffold17966 C 0 I 1088

a score=-11910.000000
s ce10.chrX             1145291 31 + 17718866 ---------TGTTTCTA----GTTATAA--------AGTTCTGATCTATTTG
s cb4.chrX                32149 31 + 21540570 ---------------------ataataacaaATCACACGCATGATTGAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  287536 17 +  1162296 ---------------------TTGATAG--------------GATTAGGTAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84783 25 -   141934 ---------tgttttcctacttgtaaaa--------------aattaa----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      395403 31 -   783054 gaaaaattgtgattttgaaC-TGAATGC--------------GATT------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   33849 1088 -   140921 I

a score=302197.000000
s ce10.chrX             1145322 636 + 17718866  
s cb4.chrX                32180 577 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  287553 586 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84808 574 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      395434 581 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   34937 595 -   140921  
i caeJap4.Scaffold17966 I 1088 C 0

a score=151.000000
s ce10.chrX             1145958 3 + 17718866 TTG
s caeRem4.Crem_Contig24  288139 3 +  1162296 tta
i caeRem4.Crem_Contig24 C 0 I 31
e caePb3.Scfld02_62      396015 0 -   783054 C
e caeJap4.Scaffold17966   35532 0 -   140921 C
e cb4.chrX                32757 0 + 21540570 C
e caeSp111.Scaffold514    85382 0 -   141934 C

a score=-10111.000000
s ce10.chrX             1145961 65 + 17718866 GTTTTTAATAAATGTAGTCT-GAATA--TTTTGAGGAACGTCTAAACTATGAAGCATCAAATTATTGA
s cb4.chrX                32757 14 + 21540570 ------CATAAACTGATTGC------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    85382 39 -   141934 ---------AGACGTGGATCAGTATG--TTTTAT-------------TATAATATGCCaagtt-----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396015 32 -   783054 ---------aaatgattttcagaacgaatTTTGA-------------TATATTG--------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   35532  0 -   140921 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=0.000000
s ce10.chrX             1146026 6 + 17718866 ATATGG
e caePb3.Scfld02_62      396047 0 -   783054 C
e caeJap4.Scaffold17966   35532 0 -   140921 C
e cb4.chrX                32771 0 + 21540570 C
e caeSp111.Scaffold514    85421 0 -   141934 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=-1148.000000
s ce10.chrX             1146032 63 + 17718866 CCATACACTATCTTGTGAGTCTAGCGTCTGCAAAACATTTACGGGATATTTCAGCAGAGTCTG
s caeSp111.Scaffold514    85421 18 -   141934 --------------------------------gaacattt--------tttaatcaaa-----
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      396047  0 -   783054 C
e caeJap4.Scaffold17966   35532  0 -   140921 C
e cb4.chrX                32771  0 + 21540570 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=-3536.000000
s ce10.chrX             1146095 47 + 17718866 AAAAACAGTTATCCCATGATCGTTGAGGGTATTCACTCCGCAGTAAG
s caeSp111.Scaffold514    85439  3 -   141934 --------------------------------------------aag
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   35532 28 -   140921 --------------gaaaataattaatttttttcaatcccTA-----
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      396047  0 -   783054 C
e cb4.chrX                32771  0 + 21540570 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=-11469.000000
s ce10.chrX             1146142 90 + 17718866 GAACGATGATAAAGATTCAATGTTCCCGCTAGACTTCAAAATGCCGACTATATTTTCAAGTCTAATTTAAAGCCCACAAAAACTCAGCAA
s cb4.chrX                32771 18 + 21540570 ---------------------------------------GAATGAGGCTAAAT-------------------------AAAG--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    85442 33 -   141934 -------------------------------gACTGCCAAAATTTGACTTTGC-------------------------ATAACTTTGAG-
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   35560 16 -   140921 ----------------------------------------ATTCAATTTAAAT-------------------------TCA---------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      396047  0 -   783054 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=0.000000
s ce10.chrX             1146232 2 + 17718866 AC
e caePb3.Scfld02_62      396047 0 -   783054 C
e caeJap4.Scaffold17966   35576 0 -   140921 C
e cb4.chrX                32789 0 + 21540570 C
e caeSp111.Scaffold514    85475 0 -   141934 C
e caeRem4.Crem_Contig24  288142 31 +  1162296 I

a score=80237.000000
s ce10.chrX             1146234 91 + 17718866 AACTTACAATCCATCTCCAACAACAATGATATTTCCAGCAACTCCTGGAATCGGCCGGTAATTGTTGTATACAAAACGAAGAGCACTGAAA
s cb4.chrX                32789 89 + 21540570 --CTTACAAGCCATCTGCAACAACGATAATGTTTCCTGCAACTCCTGGAAGTGTGCGGTAGTTGTTGTACACAAACCGTAGAGCACTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  288173 91 +  1162296 AACTCACAATCCATCAGCAACCACAATAATGTTACCAGCAACTCCTGGAACCGGACGATAATTGTTGAACACAAATCGTAGAGCACTGAAA
i caeRem4.Crem_Contig24 I 31 I 309
s caeSp111.Scaffold514    85475 91 -   141934 AACTCACAAGCCATCCGCTACAACAATAATATTTCCAGCCACTCCTGGTGTAGGACGGTAATTGTTGTAAACAAAGCGAAGAGCACTaaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396047 91 -   783054 AACTCACAATCCATCTCCAACAACAATAATATTTCCAGCAACCCCCAATTCAGGACGGTAGTTGTTGTAGACATACCGGAgagcactgaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   35576 88 -   140921 ---TTACAATCCATCTCCAACCACAATAATGTTGCCAGCAGTTCCATAGGCAGGACGGTAATTGTTGAACACAAATCTTAGCGcactgaaa
i caeJap4.Scaffold17966 C 0 I 3

a score=-6984.000000
s ce10.chrX             1146325 27 + 17718866 TTAAATTTCTTATCAACCAGATAAAAC
s cb4.chrX                32878 13 + 21540570 --------------TCTTCAATAGCAA
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold514    85566  6 -   141934 --a-------------------aaTAC
i caeSp111.Scaffold514  C 0 I 20
s caePb3.Scfld02_62      396138 25 -   783054 --attattatttctcacaaaatagcac
i caePb3.Scfld02_62     C 0 I 27
s caeJap4.Scaffold17966   35667 24 -   140921 ---ttaattattacTTTTTGTTAACAT
i caeJap4.Scaffold17966 I 3 C 0
e caeRem4.Crem_Contig24  288264 309 +  1162296 I

a score=62246.000000
s ce10.chrX             1146352 135 + 17718866 AAATG-ACTAACTCAGTGAGTTGATGTCCATCAGCACCAGTTGGGTTCACAATTGACGAGTTGAGGTTGGCAACGATGGAAGCCCAGGCTGGTTGGTTGCGGGCACGTCCCATCGGCGTTCTGAACGGACAAGAAA
s cb4.chrX                32902 126 + 21540570 gattt-acTTACTCAGTCAGTTGGTGGCCATCTGCGTTGACTGGATTGACCACAGTAGAGTTAAGATTAGCGACAACGCTGTTCCATGAGTTTTGACTGCGCGCACGACCCAGCGGAATTCTGTAAA---------
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig24  288573 126 +  1162296 GAATT-ACTAACTCGGTCAATTGATGTCCGTCTGCATTTATTGGGTTTACAATAGAAGAGTTGAGGTTAGCAACGATGTTGCTCCATGCCGCTTGGTTGTGAGCACGTCCCATTggtgttctggaaa---------
i caeRem4.Crem_Contig24 I 309 I 79
s caeSp111.Scaffold514    85592 123 -   141934 cttct-tcttactCAGTGAGCTGATGGCCATCCATATTAGTTGGGTTAACGACGGATGAATTCAACATTGTTAAAATGTTGCTCCATGATTGTTGATTACGGGCACGGCCCATTGgtgttctaa------------
i caeSp111.Scaffold514  I 20 C 0
s caePb3.Scfld02_62      396190 122 -   783054 GTTTTATCTCACTCTGTCATTTGATGGCCATCAGCGTTTGTTGGATTCACAATGGACGAATTCAACTTCGCCACAATCGAACTCCATGATTGTTGACTACGCGCACGTCCCATTGGTGTCCT--------------
i caePb3.Scfld02_62     I 27 C 0
s caeJap4.Scaffold17966   35691 123 -   140921 TTCTT-TCCTACTCTGTCATTTGATGACCGTCTAATTTCGTTGGATTGACAATAGTTGTGTTCAGTTCTGATACAACTTTGTTCCAGGATTGCTGGTTGCGTGCACGACCCAATGGGAAACTGG------------
i caeJap4.Scaffold17966 C 0 C 0

a score=-23336.000000
s ce10.chrX             1146487 113 + 17718866 ATATTTTTTGCTTCTCAAATGTTTTAATAAATCGGTTT-----AATTCTCCAGAGATTTTAAACAGTTCTTAAAAATCTGCAATATCTCAAAGGTTCAGTAATTTGCACCTAAATTTT
s cb4.chrX                33028  43 + 21540570 --------------------------Attcatttgttt-----attttttt-------ttacata--------------aTCGTATTTCAAA-------------GTG----------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514    85715  41 -   141934 ----------------------------aaaaaagttttgcgaaatttttc----------------------------gaaatatttccGG-------------TCACC--------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396312  38 -   783054 ----------------------------TCAATAGTCT-----AATTT-------------------------------AGATCATTTCAGGTG------AA---TCACCT-------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   35814  38 -   140921 ----------------AACCGTTGTA--AGATATATTT-----GTTTCTAA----------------------------TCAACACTTT-----------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  288699  79 +  1162296 I

a score=128816.000000
s ce10.chrX             1146600 347 + 17718866 TTCCAACAAAAA-----AAACTAACGGCTCATTTGCTCCATAAACAACAAGCCGGAACTCTTGATTATTCCAATTAGTATTTTGATCTAAGTTTACCAATGAAGCAGCATTACTCAAGTAGTTCGAAAT----------------------------------------------------CATTGCCAGCTTATTATCCAGCGTTCCAATAATTGGCACGGATACGTCAACCAAGAAAATGTTTCTGAATGGCGTGGAAGATGAATCACAGACTGCGCCAAGTTTCATAGGAGCTGTGGT------AGTGGGCGGCATATTTGATGGTGGTACAG-ATGGAGAAACAGATGGATTGACCGGTTGAGTAGGAGGAATGAGGCCCGAGCATTGCGATGTTGAAGACACTGAA
s cb4.chrX                33072 341 + 21540570 -TTCAATAGAA----TCCAACTCACGGTTCGTTGGCTCCATAAACAACAAGACGAAACTCCTGGTTATTCCATCGGTTTGTTTGATCTAAATTCACCAGCGATGCGGCATTGTTAAGATAAGCAGAGAT----------------------------------------------------TTTGCTGAGCTTATCGTCCAATGTTCCAATAATGGGTACTGAAACGTCGACCAAGAAAATGTTGGTTAAAGCAATATTCGAAGCATCGCATACTGCACCCATGATCATTGGTTGTGTTGT------TACGAGTGGGCCATTTGATGGGTTTAAAG----TAGGGTTGGTTGTA---ACACCTTGTAATGGTGAGGCTAGTCCGGAGCATTGAGAAGTAGATGATACTAAa
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  288778 342 +  1162296 -TTCTAAAGAAGGTGTCGAACTCACGGTTCATTGCCTCCATAAATCACAAGTCGGAATTCTTGGTTGTTCCAATCCGCTGTTTGATCCAAGTTGACCAATGACGCAGCATTATTCAAATATGTTGAAAT----------------------------------------------------TTTGCTCAGCTTATCATCTAATGTTCCGATAATTGGAACAGATACATCCACCAAGAagatatttttcaatggaGTTGAAGAGGCGTCACAAACAGCTCCAAGTTTCATGGGGACCGTTGT------GGTAGCTGGTCCACTGGATGGGTTTGATGGATTCACAGTTTGTTG----------TTGGACTGGTGGAACAAGACCGGAGCATTGAGATGTGGATGATGCTGaa
i caeRem4.Crem_Contig24 I 79 C 0
s caeSp111.Scaffold514    85756 321 -   141934 -------------------ACTCACGGTTCATTAGCTCCATAGACAACCAAGCGAAACTCTTGGCCATTCCAATCCAAGTTGTTTTCAAGATTGACCAAGGAAGGAGCGTTGTTCAGGTAGTTTGCAAT----------------------------------------------------CTTGCTCAATTTATCATCCACAGTTCCAATAATTGGAACAGATACATCGACCAAAAATACGTTTGTCAGCGCAATATTAGAGGCATCACAATAAGCTGAGTAGTGCATTGGAGTAGTGGTTCCCAGGGAGACTGGATTGCTTGAAGGGTTGCTAG----ATGGATTAGAAGT---------------TGGAGGAATGAGTCCGGAGCATTGAGACGttgaagaagctgaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396350 335 -   783054 -----------------TTACTTACGGTTCATTGCCTCCATAAACGACAAGTCTGAATTCTTGCCCATTCCAATCCGAGTTCTGATCCAGATTGACGAGAGATGCGGCATTATTCAAATAGTTGGAAAT----------------------------------------------------CTTGCTCAATTTATCATCTAATGTACCGATGATTGGCACAGATACATCCACCAAGAATATATTTCTGAGAGCAGTCGATGAAGCGTCACAATATGCACCCAGATGCATTGGAGCAGTAGTTCCGGTTGTTACCGGAGCATTCGTAGAGCTGCCAG----AAGGATTAGAAGTA---ACAGGTTGAACCGGAGGAATGAGACCCGTGCATTGAGACGTAGAACTTGCTAAA
i caePb3.Scfld02_62     C 0 I 36
s caeJap4.Scaffold17966   35852 358 -   140921 -------------------ACTTACGGCTCATTGCCACCATATACTACTAGTCGGAACTCCTGACCATTCCAATCATCATTAGAGCTTAAATTGACTTGAGATGGCACATTCagtaaaaaattggaaatctaAAAATAGAACCGGTTGCACGCATATGTacataaattaaaatgaaacaaCCTTAGACAATTTGTCATCTATTGTGCCAATAATTGGATCAGAAACGTCTACCAAGAAAATGTTTGTAAGAAGGTTTGCTGAAGCATCGCAATACGCATTTTGCTTTCCTGGATCTGAGGT------AATGAAAGGA---------GAAGTGGTAG-----ATAACTGAACGTT--------------AAATGGCAAAAGTCCGGAACATTGAGAGGTCGGGATCACtaaa
i caeJap4.Scaffold17966 C 0 C 0

a score=-708.000000
s ce10.chrX             1146947 5 + 17718866 GAAAA-
s caeRem4.Crem_Contig24  289120 4 +  1162296 -agta-
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514    86077 4 -   141934 -aaaa-
i caeSp111.Scaffold514  C 0 I 2
s caeJap4.Scaffold17966   36210 5 -   140921 -acaaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      396685 36 -   783054 I
e cb4.chrX                33413 0 + 21540570 C

a score=1720.000000
s ce10.chrX             1146952 6 + 17718866 CTTGTT
s cb4.chrX                33413 5 + 21540570 -ttgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  289125 6 +  1162296 tttttt
i caeRem4.Crem_Contig24 I 1 I 25
s caeJap4.Scaffold17966   36215 5 -   140921 -ttatt
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      396685 36 -   783054 I
e caeSp111.Scaffold514    86081 2 -   141934 I

a score=604.000000
s ce10.chrX             1146958 4 + 17718866 TTAA
s cb4.chrX                33418 4 + 21540570 ttga
i cb4.chrX              C 0 I 12
s caeJap4.Scaffold17966   36220 4 -   140921 tcaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      396685 36 -   783054 I
e caeSp111.Scaffold514    86081 2 -   141934 I
e caeRem4.Crem_Contig24  289131 25 +  1162296 I

a score=34.000000
s ce10.chrX             1146962 5 + 17718866 CAGTA
s caeJap4.Scaffold17966   36224 5 -   140921 aactA
i caeJap4.Scaffold17966 C 0 I 4087
e caePb3.Scfld02_62      396685 36 -   783054 I
e cb4.chrX                33422 12 + 21540570 I
e caeSp111.Scaffold514    86081 2 -   141934 I
e caeRem4.Crem_Contig24  289131 25 +  1162296 I

a score=0.000000
s ce10.chrX             1146967 405 + 17718866 GATAACGTTTTTTAGTTTCTAGTCAAGTTTCAACCATAGTAGTCCCGATTCGTAGTAAAATGTTACCGTTTTAGTATGATATCATGAAGTACATTTGTGTTAAAGGTAGATCATTACTCATTACTAGAATTTTATTACTAGAAATACTAGACTCATTACTAGGTCATTACAGAAAACTGCCGGTAGTAAATATTTTTCAGCTAGCACAAATTCCAGAGAAATTTAAGCACAATTATTTGTAATTAGCCTTCAAAACTTTAACTTAGATTTTTCAAATTTCAATTTCTCTTTCATATTTCACATATTAGAGTAATTTTGAGCAAACTTTAGTAGAATATTACTTCTGTAGGCAATATCAGTAGAATATTACTTCACTAGGCAATATCCGCACATCTCAATATTATT
e caePb3.Scfld02_62      396685  36 -   783054 I
e caeJap4.Scaffold17966   36229 4087 -   140921 I
e cb4.chrX                33422  12 + 21540570 I
e caeSp111.Scaffold514    86081   2 -   141934 I
e caeRem4.Crem_Contig24  289131  25 +  1162296 I

a score=392.000000
s ce10.chrX             1147372 11 + 17718866 CAGGAAATCTG
s caeSp111.Scaffold514    86083 11 -   141934 cgggcGCTCTG
i caeSp111.Scaffold514  I 2 C 0
e caePb3.Scfld02_62      396685 36 -   783054 I
e caeJap4.Scaffold17966   36229 4087 -   140921 I
e cb4.chrX                33422 12 + 21540570 I
e caeRem4.Crem_Contig24  289131 25 +  1162296 I

a score=-119.000000
s ce10.chrX             1147383 17 + 17718866 -AAAAAAAGTTCAAACCA
s cb4.chrX                33434 17 + 21540570 -AAGATAGGTTTGAACGA
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold514    86094 17 -   141934 AGAAAAATGTTATGGTG-
i caeSp111.Scaffold514  C 0 I 2
e caePb3.Scfld02_62      396685 36 -   783054 I
e caeJap4.Scaffold17966   36229 4087 -   140921 I
e caeRem4.Crem_Contig24  289131 25 +  1162296 I

a score=51498.000000
s ce10.chrX             1147400 128 + 17718866 ACCGAATGCGTTGGTCAGGTAACCCTGCGACGAAAGTGCATTTATAACAGATGCTGGTGTTGCTGTTGTATCCGGGAAGATCAGCTCAGCGTAGAAGTTAACTCCATTTGGATTTTGGCTGAAAACTT
s cb4.chrX                33451 128 + 21540570 ACTAAAAGCATTCGTCATATAACCCAATGAAGATAAAGCGTTGGTGACAGATGTTGTGGTTGCAGTGGTATCAGGGTAAATCAATTCAGCATAGAAGTCAACACCATTATTgtcttgtctgaaatttt
i cb4.chrX              C 0 I 148
s caeRem4.Crem_Contig24  289156 126 +  1162296 ACTAAAAGCATTGGTCAAGTAACCCAGAGAGGAGAGTGCATTGGTGACGGAAGAGGTAGTGGCTGTTGTGTCAGGGTACACCAATTCCGCGTAGAAATTGACTCCGTTTtggttttgtctgaaaac--
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold514    86113 123 -   141934 ACTGAATGCATCAGTTGTGTATCCCAAAGAAGTGAGAGCTGCGGTTACACTTGCAATTGTGGCAGAAGAATCCGGGAAAATAAGTTCAGCATAAAAATTAACTCCATTTGTGCTTTGTCtgaa-----
i caeSp111.Scaffold514  I 2 C 0
s caePb3.Scfld02_62      396721 123 -   783054 ACTGAAAGCATTTGTAGTGTACCCCAAAGAGGAGAGTGCATTGGTAACAGAAGTTGTCGTTGCTGAAGTATCTGGATAGATGAGTTCTGCATAGAAGTTCACTCCATTTTGATTCTGgctgaa-----
i caePb3.Scfld02_62     I 36 C 0
e caeJap4.Scaffold17966   36229 4087 -   140921 I

a score=-15483.000000
s ce10.chrX             1147528 105 + 17718866 GACTCTGGCCAATTGATATACATTTTG---------------------TTCTATGC-TTCATGACTCCCATTTGTGA----------CTACTTATTTTTTATCGGCTT--ATCATA--TATCAATTATACAACGC-------CCGAGC
s caeRem4.Crem_Contig24  289282 130 +  1162296 ------atccagtcagttttttttctgaaaacaccCTGTATCGACGTTTTTGATAAGTTATTGA--ActatttccgaaattttgggTAATCCCATTTT------GTGTCAattaaaattatcaattt---aCTACCTGTTTATCAGT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86236  61 -   141934 -------------------------tg-----------------------------------aa--actttttaCAA--------------GTACTTTACATTCGCATTCATCATT-CCATCATTTG---AATGT-------CCAGGC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396844 106 -   783054 -----------atttatttattctctga-------------------tttcaat---ttcacaa--aatttctgcaa-acaataacaaaacaCATTTTACAACCGTGTCAATCATTGTTATCAGTTG--AAATGTCTG----CCATGC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   36229 4087 -   140921 I
e cb4.chrX                33579 148 + 21540570 I

a score=-12602.000000
s ce10.chrX             1147633 20 + 17718866 ATCTGGAAAA----------CTGATAAGGA------------
s cb4.chrX                33727 13 + 21540570 GTTT--AGAAAATTC---------------------------
i cb4.chrX              I 148 C 0
s caeRem4.Crem_Contig24  289412 33 +  1162296 ATTTGCAGACAAATCAAAACTTTATGAG--TTGTG-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86297 20 -   141934 --------------------ATTATCAGTACAGTATATGA--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      396950 20 -   783054 --------------------GTTGTCAG--CGGTAGTTTAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   36229 4087 -   140921 I

a score=27842.000000
s ce10.chrX             1147653 71 + 17718866 ACTCACGTAAACGCATTAATTTGAGTTGTGAGCGGTG---------CTGAGCCAAATGAATTTGTTGGGCTTGTGTAGGC
s cb4.chrX                33740 65 + 21540570 ACTCACTTAAATGCATTGATTTGCGTGGAAAGAGGTG---------CTGTTCCAAATTTGTT------TTGAGAATAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  289445 71 +  1162296 ACTCACGTAAATGCATTAACTTGAGTGTTTAACGGTG---------CCGATCCAAACTGATTTTGTGATTGGGAGTATGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86317 71 -   141934 ACTCACGTAAATACGTTGATATTGGTAGTAAGAGGGG---------ATGATCCGAATTGGCTACCAGGGTTGGAATAAGC
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      396970 71 -   783054 ACTCACGTAAACGCATTAATTATTGTGCTGAGTGGTG---------CTGATCCAAATTGGCCTTGAGAATTTGAGTAAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   40316 80 -   140921 ACTAACCTAAACGCGttaatttgcgaaaaaattggTGGTGAAATTTCTGCGGCATATGACATCTGCTTTTGAGACCAGGC
i caeJap4.Scaffold17966 I 4087 C 0

a score=-6260.000000
s ce10.chrX             1147724 54 + 17718866 ATTTGAGATCTAAATAAAATTAGCTTAAAAATTTTAATAAATCGTTGAGATGTA
s cb4.chrX                33805 31 + 21540570 ACTAGTAATCTAGAAAGCATGtgtttga----ttt-------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig24  289516 26 +  1162296 ATTGGAGATCTACAAAA-----ACTAAT----TGC-------------------
i caeRem4.Crem_Contig24 C 0 I 13
s caePb3.Scfld02_62      397041 48 -   783054 AGTGGTGATCTGCAAAA--TGAATTTGA----TACAGTAGGAAGATGATgtgaa
i caePb3.Scfld02_62     C 0 I 14
s caeJap4.Scaffold17966   40396 46 -   140921 ATTGGAAATCTGTACTAATAAAAGTTAA----TAAATTATATATATCGTC----
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    86388 28 -   141934 I

a score=-11176.000000
s ce10.chrX             1147778 25 + 17718866 -----AATTTTTAA-----GTGACTTTCAAAAAAT
s cb4.chrX                33848  7 + 21540570 -------ttcagaa---------------------
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24  289555  9 +  1162296 -----AATCTATCA---------------------
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold514    86416 21 -   141934 -----ACTTTTCAATTGGTTTCATTT---------
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      397103 30 -   783054 -----aattcataagttttttggttttttagaaAT
i caePb3.Scfld02_62     I 14 I 259
s caeJap4.Scaffold17966   40442 10 -   140921 ACTAACATTC-------------------------
i caeJap4.Scaffold17966 C 0 C 0

a score=59041.000000
s ce10.chrX             1147803 174 + 17718866 CTTACGTTTGTCGAAATTCCAGTGGCAAGAGTTTTGAAAGCATCTGAATTCGAATTTGCATAATCAGAATTCCATGAAATTCCGGCTACAAGAGAAGTCGTGAAAATTACGACTGGTTGGATTGTCGGCACAGGCGT-----TGTAGTAGGAATGTCTTCAGGCATAGGTGCTGGAAAG
s cb4.chrX                33855 170 + 21540570 tttacattgttggaaatcgaagtgGCCAAAGTCTTAAAACTGTTGGAATTAGGATTTGTGTAGTCAGTGCTCCATGCAATCCCGCTGACAAACGATGTTGCAAAAATCACTACTGGTTGGATGGTTGGGGCAGCTGT-----AGTCGTTGGCATTTCATAATAT---GGGGCTGAAAA-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  289564 157 +  1162296 CGTACATTGTTAGAAATAGCAGTTGCCAAAGTTTTATAGGCGGCAGAGTTGGAGTTAGTGTAGTCAGGGCTCCAGGCGATTCCACTTATGAGAGAAGTGGCGAAAATTACAGTTGGTGTTAAAACAGGAGCTGCAGT-----AGTTGTTGGAATATCAT-------------CGA----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86437 170 -   141934 CTTACATTAGTCGAAATTGCAGTTGCTAGTGTTTGAAAAGCGACAGAGTTAGAATTCGCGTAGTCGGGATTCCAGGTGACTCCACTGATAACGGAGGTAGTAAAAATAACAACAGGCTGAATTGTAGGAGTTGATGT-----AGTTGTAGGGAAATCATCGAAT---GGTGCTataaa-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      397392 171 -   783054 CTCACATTTGTGGAAATTGCAGTTGCGAGTGTGTTGAAAGCTGTAGATTTTGGGTTTCCATAATCAGCGGTCCAGGCTACTCCACTGGCTAGAGAAGTGGCAAAAATAACAACAGGCTGAATAGTCGGCGCTAATGT-----AGTTGTTGGATTATCATCAAAT---GGTGCTGAATAG
i caePb3.Scfld02_62     I 259 I 16
s caeJap4.Scaffold17966   40452 145 -   140921 -------TTTTCCAAATTCAAA--GCTAAATTTTTGAAAGCATCGGAAGATGGGTTACTGAGATCATTAGTCCAAGGGATTCCACCCGCAAGTGAAGTTGTAAAAATTGCAATCGGAGTGATGGAAGTCGGGAATGTTGGAAAGTCGTAGAAAG-------------------------
i caeJap4.Scaffold17966 C 0 C 0

a score=-5520.000000
s ce10.chrX             1147977 52 + 17718866 TAACCGATTATGGATTGTTTTAAAAGTAATACTCTTTCTATTTTTTAGTTAT
s cb4.chrX                34026 10 + 21540570 ------------------------------------------TCTTCTCAGT
i cb4.chrX              I 1 I 3
s caeSp111.Scaffold514    86607 10 -   141934 ------------------------------------------tttttgttgt
i caeSp111.Scaffold514  C 0 I 1
s caeJap4.Scaffold17966   40597 29 -   140921 ----------------GAGCTAAAcataaaattaat------atttagTTA-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeRem4.Crem_Contig24  289721  0 +  1162296 C

a score=0.000000
s ce10.chrX             1148029 1 + 17718866 T
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40626 0 -   140921 C
e cb4.chrX                34036 3 + 21540570 I
e caeSp111.Scaffold514    86617 1 -   141934 I
e caeRem4.Crem_Contig24  289721 0 +  1162296 C

a score=-2507.000000
s ce10.chrX             1148030 41 + 17718866 AGTTCTTTTATATTTTACAATATAGTCTATTCCATATAGTG
s caeRem4.Crem_Contig24  289721  6 +  1162296 -----------------------------------ATGGTg
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   40626 15 -   140921 -------------TTTAAAATCTAATTT-------------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e cb4.chrX                34036  3 + 21540570 I
e caeSp111.Scaffold514    86617  1 -   141934 I

a score=135.000000
s ce10.chrX             1148071 20 + 17718866 TAACATTTTTACCCAATTAC
s caeJap4.Scaffold17966   40641  6 -   140921 --------------AATTAC
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e cb4.chrX                34036  3 + 21540570 I
e caeSp111.Scaffold514    86617  1 -   141934 I
e caeRem4.Crem_Contig24  289727  0 +  1162296 C

a score=0.000000
s ce10.chrX             1148091 50 + 17718866 TCTGACAAGGCTTGTGAAATAAGATGTCCTATTTTGAAATTTCAGACCTA
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40647  0 -   140921 C
e cb4.chrX                34036  3 + 21540570 I
e caeSp111.Scaffold514    86617  1 -   141934 I
e caeRem4.Crem_Contig24  289727  0 +  1162296 C

a score=60.000000
s ce10.chrX             1148141 15 + 17718866 GTCTTTTGGTAAACA
s cb4.chrX                34039 10 + 21540570 GCCTTTAGGt-----
i cb4.chrX              I 3 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40647  0 -   140921 C
e caeSp111.Scaffold514    86617  1 -   141934 I
e caeRem4.Crem_Contig24  289727  0 +  1162296 C

a score=886.000000
s ce10.chrX             1148156 17 + 17718866 CATTTTTTGAGGCTAAT
s cb4.chrX                34049  7 + 21540570 --ttttttG--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    86618 17 -   141934 cgttttttgaatttaat
i caeSp111.Scaffold514  I 1 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40647  0 -   140921 C
e caeRem4.Crem_Contig24  289727  0 +  1162296 C

a score=0.000000
s ce10.chrX             1148173 20 + 17718866 GTTTCCAGGGCGGCCTGAAT
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40647  0 -   140921 C
e cb4.chrX                34056  0 + 21540570 C
e caeSp111.Scaffold514    86635  0 -   141934 C
e caeRem4.Crem_Contig24  289727  0 +  1162296 C

a score=0.000000
s ce10.chrX             1148193 57 + 17718866 CTCGAAAAGAGAAATAACGTACTTGATAATGAAAAATTATATAAAGTGGTCCATAAT
s caeRem4.Crem_Contig24  289727 26 +  1162296 ctaaaatagaaaaataa-------------gaaaaatt------------------t
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      397563 16 -   783054 I
e caeJap4.Scaffold17966   40647  0 -   140921 C
e cb4.chrX                34056  0 + 21540570 C
e caeSp111.Scaffold514    86635  0 -   141934 C

a score=-2310.000000
s ce10.chrX             1148250 24 + 17718866 TATGAGCTCCCTGTATACAAAAGA
s cb4.chrX                34056  4 + 21540570 ---------TCTG-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  289753 18 +  1162296 taagagggtactgtaggt------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      397579 18 -   783054 GAAGAATTTTCGGTATAC------
i caePb3.Scfld02_62     I 16 C 0
e caeJap4.Scaffold17966   40647  0 -   140921 C
e caeSp111.Scaffold514    86635  0 -   141934 C

a score=8745.000000
s ce10.chrX             1148274 17 + 17718866 AAACTCACGCATGGGTG
s cb4.chrX                34060 14 + 21540570 ---CTTACGCATTGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  289771 14 +  1162296 ---ccTACGCATTGGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86635 17 -   141934 cAACTCACGCATTGGTG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      397597 13 -   783054 ----TCACGCATTGGTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40647  0 -   140921 C

a score=89771.000000
s ce10.chrX             1148291 340 + 17718866  
s cb4.chrX                34074 393 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  289785 553 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    86652 362 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      397610 370 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   40647 326 -   140921  
i caeJap4.Scaffold17966 C 0 I 2666

a score=22772.000000
s ce10.chrX             1148631 77 + 17718866 CGCTTTGATTTCACCCGAA-AAAGGAGCACAAGCCTTGATGTATCATTGCGAGTTAGATGATGAAATTTATGACT-TGC
s cb4.chrX                34467 75 + 21540570 AACtcaaaatattccg-aataAGCCAGCAAAGTT--TGCtgaatcattttgaattaGATGATGAAATTTATGACC-GGC
i cb4.chrX              C 0 I 571
s caeRem4.Crem_Contig24  290338 76 +  1162296 AACTCAACATCTACCGAAACGGGGAAGCAAAACC--CCCCGTATCATAGATAGTTAGATGATGAAATTTATGACA-GGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    87014 78 -   141934 AACTCAATCTCTACCTGATTTAGGGAGCGGCTACTATTCTTAATCATTTCGAGTTATATGATGAAATTAATGACT-TGC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      397980 77 -   783054 AACTCAATATCTACCGAA--AATGAAGCAAAACTCTctctgaatcattttgaattagaTGATGAAATTTATGACTGTGc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=546.000000
s ce10.chrX             1148708 1 + 17718866 T
s caeRem4.Crem_Contig24  290414 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    87092 1 -   141934 T
i caeSp111.Scaffold514  C 0 I 740
s caePb3.Scfld02_62      398057 1 -   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                34542 571 + 21540570 I

a score=-1550.000000
s ce10.chrX             1148709 52 + 17718866 ACTGATTTTTCGG-AGACACAGAA-----CGAAATCAGCGCTCTTTGGAGTGACTGTG
s caeRem4.Crem_Contig24  290415 32 +  1162296 TCTGA---------AGAAATcggagaatttgaaaa------------gagtGT-----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      398058 55 -   783054 tctgatttattttcagaaatgaaaagttgtgaaaa---tgttttatgtAGTGTTTGTG
i caePb3.Scfld02_62     C 0 I 290
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                34542 571 + 21540570 I
e caeSp111.Scaffold514    87093 740 -   141934 I

a score=1254.000000
s ce10.chrX             1148761 161 + 17718866 AGGAAGTTTAAGC--TTTCGAAACTTTTTAAT-TTTTAATTGTGATTTTAAAACGTTACCGATAAAATACTTTTCCACTTTTTTATAATTTAATTTCAGTGTGTGTTTTCACGCAAGTTTTACTTTTTTTCCGAAACTTACGAAAGCCTAACATAAAAGCCTAC
s caeRem4.Crem_Contig24  290447 146 +  1162296 ------TTTATGcgttttttgtgttctttAGTGTTGTAACCACAATTTTACA--GAAACAGATAAAGTTtctttaaatgtttttgttgtcaaATCTCAA--------TTCACCTA--TTTCAATCTTTTGGTCAAATCTCTAAGTGCCTTACTCAACACTATAC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      398113 290 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                34542 571 + 21540570 I
e caeSp111.Scaffold514    87093 740 -   141934 I

a score=0.000000
s ce10.chrX             1148922 8186 + 17718866  
e caePb3.Scfld02_62      398113  290 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                34542  571 + 21540570 I
e caeSp111.Scaffold514    87093  740 -   141934 I
e caeRem4.Crem_Contig24  290593    0 +  1162296 C

a score=633.000000
s ce10.chrX             1157108 19 + 17718866 TTTCGAGTCTCACAATTTT
s cb4.chrX                35113 19 + 21540570 TTTTCAGTTGTCCAGTTTT
i cb4.chrX              I 571 C 0
e caePb3.Scfld02_62      398113 290 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    87093 740 -   141934 I
e caeRem4.Crem_Contig24  290593  0 +  1162296 C

a score=29.000000
s ce10.chrX             1157127 1 + 17718866 T
s cb4.chrX                35132 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    87833 1 -   141934 T
i caeSp111.Scaffold514  I 740 C 0
e caePb3.Scfld02_62      398113 290 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeRem4.Crem_Contig24  290593 0 +  1162296 C

a score=546.000000
s ce10.chrX             1157128 1 + 17718866 A
s cb4.chrX                35133 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  290593 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    87834 1 -   141934 A
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      398113 290 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=56072.000000
s ce10.chrX             1157129 239 + 17718866 AAAACCATTCGAGCACACGTCCTCTGTAC---AAGTACGTGTCGAATGTGGCCGACTTAA--GGGTCGAAACTTGTGCACCCGCACTTCCGGTGTCTTG------GTGTTT------------------ATGCGCACGCCTCGCAAAAAGGTTGCTCATTT-CTTTGC-----------------GAGTGATGGTTG--GGGGT--------AATTCCAATTTCCCGACGCCTTCTGAATCGGGAAATTTGGCGACACCGACTGCCTCATCAACATCGTTTTC---CAGGATGGGTGA-G
s cb4.chrX                35134 254 + 21540570 GGAATCATTCAGGCATAATTTCCGATTTA---AA----ATGTCAAAAGTGTCGA-------AGTGTTGGAATTTAGGCATCCGTACTTCCGGTCTCTTGAGC---ATGGAT----TTCTTCCAATTCTGATGTTTACGAATTCAACAAATGTTTGCTTTCT-TTCTTTGAAATAAGTTGCGAGATGTACAATGGTTC--ATGTG--------GATTCCAATTTCCCACCGTCGTCTGACCCAGGAAATTT---------GACagcgtcttcttcttcttttct---caaaatggGTAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  290594 258 +  1162296 AAATTCATTCAGGCACAAATCCTTCGTAC---AA----GTGTCAAATGTACCGAGACATAGGGCGTCGAAACTTGGGGATCCGTACTTCCGGTGTCTTG------TCGTTT----CCCTTCAAATTTTGGTGTTTACTTCTTCA--AAAGGTTTCCCTCTT-CCTTTCGATAGAAGTTGGACGATGCAAGATGGTGCTAATGTG--------AATTCCAATTTcccaacgtcttctgattcagGAAATTT---------GACTGCTTCATCATcgtcgttttt---gaaaatgggtaa--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    87835 240 -   141934 AAACTCATTCAGGCACAATTCCTCTTCAC---AA----GTGTCGAATGTACCAAAACGAA----------ATTTGGGCATCCGTACTTCCGGTGTCTTAGCCTcgccattt----ttcttcaaat--tggtGTTTACT-------------TTTACTGCCACATTTCT------CTTTGATCAATGAAAGATGG-----AAGCGGTAATttaaattccaatttcccAACGCCTCttgaaacaggaaattt---------GACGGCTTCGCCTGCTCCGTTTTT---GAAGATGGGTAAG-
i caeSp111.Scaffold514  C 0 I 137
s caePb3.Scfld02_62      398403 256 -   783054 AAACTTATTCAAGCATATTTCCTTTGTACTAGTA----GTGTCAAATGTACCAAATCGAAGGGCGTCGACATTTGGGGATCCGTACTTCCGGTGTCTTGCCGTTATTGGTTTCACTTGGTCGAAG--Tggtgtttatt-------------tttttcttca-atttctaaatAAAATTAGACGATGAAAGACTG-----AAATG--------AATTCCaatttcccaactttttcagaatcaggaAATTG---------GACGGCttcatctgcttcttcttttccgaaaatggGTAA--
i caePb3.Scfld02_62     I 290 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-10387.000000
s ce10.chrX             1157368 83 + 17718866 TGTGAGATTA-------AAAATCAA---ACATTAGAGGCTGCAACTTTCAT-TTTGTGTTGGTTTTTGTCTGGAGTTTTTAGAGTT-------TTTTTTTT--------
s cb4.chrX                35388 61 + 21540570 -GTGACATTT-------AAAAGTAACACACACTT------------------TTTgtgc---gttt---------tttttcga----------atttctgtggggtatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  290852 87 +  1162296 -gaAAAACTTTAAGCGATAAAccaagagaaaattgaatcgG--tttttcatctttgagt---gtttcatcaaga-ttttttca----------ttttttttg-----tt
i caeRem4.Crem_Contig24 C 0 I 427
s caePb3.Scfld02_62      398659 68 -   783054 ---------------GCAAGTTTAAGAAACAATA---------GTTTATATCTAAGAGT---TCTTCGT------TTTCTCCagtagaaactttttttttt--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    88075 137 -   141934 I

a score=644.000000
s ce10.chrX             1157451 5 + 17718866 CAACT
s cb4.chrX                35449 4 + 21540570 -aatt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      398727 5 -   783054 cagtt
i caePb3.Scfld02_62     C 0 I 185
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    88075 137 -   141934 I
e caeRem4.Crem_Contig24  290939 427 +  1162296 I

a score=1163.000000
s ce10.chrX             1157456 176 + 17718866 GAAAAAATTCTAAAAATCTGAAAAATCTTCTACATAGTTAGTACCTGAATTGCACTTCACAGGTTC----------CACTTTTTGATATCCAATTTCACTTTTTGTAACAGAAGCGGAAACTAGTAAGTCATC--AAACACCTAATTGT-TTACTGATAA-----------CTTTTGAAAAGATTTTGAAAAGAAAGAAA
s cb4.chrX                35453 170 + 21540570 gaaaaaa------------aaagtattttttacTACTTTTACTTTTGAACTG-GCTTCACAAGTTCGAAAACAGCTCAGTACTTAACAActggtttttattttt-------------aagattGTTAGATATCGAAAACATATATTTGTATTTCTGAGAACAGAAGTACCTCTTTTAAAA----Cttggatagaaaaaaa
i cb4.chrX              C 0 I 47
e caePb3.Scfld02_62      398732 185 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    88075 137 -   141934 I
e caeRem4.Crem_Contig24  290939 427 +  1162296 I

a score=0.000000
s ce10.chrX             1157632 1025 + 17718866  
e caePb3.Scfld02_62      398732  185 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35623   47 + 21540570 I
e caeSp111.Scaffold514    88075  137 -   141934 I
e caeRem4.Crem_Contig24  290939  427 +  1162296 I

a score=1151.000000
s ce10.chrX             1158657 95 + 17718866 AACAAAAAAATTGGAGACAAAAGAGCAACTACAAAAAAAGCGAAAAGATCAAAGAAATGCTCTGTGGGAAAATTATGATGACGGAAGAATCCCTC
s caeRem4.Crem_Contig24  291366 83 +  1162296 aacaaaaaatattccaatagaaaaaaagtttgaaaaaagagcaaaagat--aagaaaCATTTTGTGGGAAATCTTCGGGGCGTGA----------
i caeRem4.Crem_Contig24 I 427 C 0
e caePb3.Scfld02_62      398732 185 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35623 47 + 21540570 I
e caeSp111.Scaffold514    88075 137 -   141934 I

a score=0.000000
s ce10.chrX             1158752 1 + 17718866 T
e caePb3.Scfld02_62      398732 185 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35623 47 + 21540570 I
e caeSp111.Scaffold514    88075 137 -   141934 I
e caeRem4.Crem_Contig24  291449 0 +  1162296 C

a score=68668.000000
s ce10.chrX             1158753 135 + 17718866 TTGTGGCCTGGCTCTGTCAG----------TTTCCGTGTGATGTGATATGAGTGATATGAGCAACAT-AAGATAAACGTTTTGTCGCAAAGTTGTCA-----GAGAAG--GAG--AGAGGGTCCCCCCACCAAGTG---ATTTCACAATCACTCAATG
s cb4.chrX                35670 141 + 21540570 tTGCGGC-ATATTCTGTCAGTTATTCGTCCGTTTCGTGTGATGAGATATGAGTGATATGAGCAACAC-AAGATAAACGTTTTGTCGCAAAGTTGTCAACCACCAGATTTCGGC--GGAG-------------AGCACGAATTTCCCAATCACTTGATG
i cb4.chrX              I 47 I 140
s caeRem4.Crem_Contig24  291449 138 +  1162296 TTGTGGC-GTACTCTGTCAGTTATTCGTCGTTTTCATGTGATGAGATATGAGTGATATGAGCAACACGAAGATAAACGTTTTGTCGCAAAGTTGTC-ACCA-CGGGGTTCGAT--AGAG-------------AGCAT--ATTTCACAATCACTCAATG
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514    88212 138 -   141934 TTGTGGCTGTACTCTGTCAGTTATTTGTC-TTCTCATGTGATGAGATATGAGTGATAAGAGAAACAT-AAGATAAACGTTTTGTCGCAAAGTTGTCACCCTTCAGAAG--GATTGAGAG-------------AGCG---GTTTCACAATCACTCAAAT
i caeSp111.Scaffold514  I 137 C 0
s caePb3.Scfld02_62      398917 137 -   783054 TTGTGGCCGTACTCTGTCagtttttcgtctttttcatGTGATGAGATATGAGTGATATGAGCAACAT-AAGATAAACGTTTTGTCGCAAAGTTGTCACTCCTCAGAGG--GAT--AGAA-------------AAAG---ATTTCACAACCACCGAATG
i caePb3.Scfld02_62     I 185 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=546.000000
s ce10.chrX             1158888 1 + 17718866 T
s caeRem4.Crem_Contig24  291589 1 +  1162296 T
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514    88350 1 -   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      399054 1 -   783054 T
i caePb3.Scfld02_62     C 0 I 1046
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35811 140 + 21540570 I

a score=-1482.000000
s ce10.chrX             1158889 142 + 17718866 ---CCTGCTAGTCGTTACGTTTT-TGAATTTTTGAGATACCTGCGCTTTTTTGTTGGGTTCAGT--------ATCGGAATATTACTAGATATTGTATTCT-----GATGGGTTTTAAGACGGCAAG---TCATGATCGAAAATCATAGGAGTAAG----------------TTTTTTA----
s caeRem4.Crem_Contig24  291590 145 +  1162296 ---CCTACTA-----CACttcct-tgaatttttga-atatttctattttcactttattttcactgttttccgCTTGTGGAGTaatttgatacttttttgttattctatGGTTTC-------GTGAGGGTTCATGATAGTGAATCAACGGAGTAAG----------------TTTACAA----
i caeRem4.Crem_Contig24 C 0 I 28
s caeSp111.Scaffold514    88351 144 -   141934 CTCCACACTA-----TACACATTGTGGATTTGTGA-ATATTACAAATT------------------------ATTGTGG-TTAATTGAATACCCTCTTCTT----TATGATTGCCTTGCCTGTAAA---TCATGAAAGTGAACAACCATAGTAAGTGCTAAACTGTAAACTTTCGCAACCAA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35811 140 + 21540570 I

a score=-164.000000
s ce10.chrX             1159031 12 + 17718866 TTTATCTT--TTAC
s caeSp111.Scaffold514    88495 14 -   141934 CTTATGATGCTCAT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35811 140 + 21540570 I
e caeRem4.Crem_Contig24  291735 28 +  1162296 I

a score=-400.000000
s ce10.chrX             1159043 19 + 17718866 AGTT------TTAGTGAGAAAAAAT
s caeRem4.Crem_Contig24  291763 25 +  1162296 agtttttttgaaactaaaaaaaaac
i caeRem4.Crem_Contig24 I 28 C 0
s caeSp111.Scaffold514    88509 19 -   141934 AGCT------GCACTTAAAATCCTT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                35811 140 + 21540570 I

a score=-33475.000000
s ce10.chrX             1159062 233 + 17718866 TA-CTGCTATATAATAAGAGGTGGTTAG--ATTTGTAGTTACCTTATTTCTCCAGAATTATTCAAATTGAGTGTGAATAGGCAGCTAATAAAACT--ATCCTGAAATAACGAGATT---TAAATA-----TTGTTTT---------------------CATT---TATATTTT----TCG------AAATTCTTTTGCGTAATTT----GCCACAAT----ATTTTTGTAAAAC----------------------------------GGATTTTCTATAG--------AAAGTTAAAGCTTTAAAAATATG----TGTTTTCTT-----GGTAAACA-A
s cb4.chrX                35951 169 + 21540570 TGCTTTCAA------ACAAACAGAGTAG--GTT-----TCAAACTG----------------------------------GCAATGTATGAATTC-CATCTC-----------------GAAATG---------------------------------AATC----ACATTTTGTTCTAG------aaactgtttc----atttt------------ttcagctgttcaaaaa-----------------------------------gtattttttttagttctagaaaaaacttaaattgcaga----------tttattttttaacaGCAAACCA--
i cb4.chrX              I 140 C 0
s caeRem4.Crem_Contig24  291788 216 +  1162296 ---ttgcaaggcgcgaaaaataaaacaa-----------taacCTGTC----------------------------ATTTGCAGTACATAGCTTC-Catcccaaaatt------tttagaaaata-----ttgtAATTCAGGCCAAC-----------AATC---TACAATTTGGTAAAGAttgaaaaaccatttt-cagattttggacACCATAACTTTGGTTTTTGAAGAAC----------------------------------ATATGTTTCATAATGTTAT--TGATTTTAAGC--CAAA----------GTTACTTAT-----GATAACCA--
i caeRem4.Crem_Contig24 C 0 I 60
s caeSp111.Scaffold514    88528 283 -   141934 TACGTGACTGACGTGAAGAGCTGATAGGATATT-----CCAACACATT----------------------------ACGAACTATGCAGAACTTTACGTTGCGAAATTA----ATCAGCTAAATGGATCCTTTTGGTTAAGAATAACTGATTATATAGAATCggttaaaatttatttctg------aaattattgt----GTTTC----AAAATACTTGTGACCATTCCACAACTCAGTCTTACATGCTCGCAATTGAGTCTTgtttaacatttttcaaaaacattcctGAGGCTCAAGTTTCAAACAGATGATATTGTCCTTTT-----GATATCCga-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-1137.000000
s ce10.chrX             1159295 16 + 17718866 CAGAGCCAAATTGATT-
s cb4.chrX                36120 13 + 21540570 ---TGTCTGaacgatt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    88811 16 -   141934 -agaaatagaataaatC
i caeSp111.Scaffold514  C 0 I 54
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeRem4.Crem_Contig24  292004 60 +  1162296 I

a score=-900.000000
s ce10.chrX             1159311 62 + 17718866 TGAAAAA---GTTCATTACATATAGTTTAAAATTTGACTATGCTTTTTCCAGCACACACTTTTTG
s cb4.chrX                36133 41 + 21540570 aaaaaaaaacgatggtCATGGGAAACTTAAAAT---AATATGTT---------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    88827 54 -   141934 I
e caeRem4.Crem_Contig24  292004 60 +  1162296 I

a score=141.000000
s ce10.chrX             1159373 14 + 17718866 AACTAAATTT------TTCA
s cb4.chrX                36174 20 + 21540570 AATTAAGATGTGACACTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  292064 14 +  1162296 AATTAAATTA------GTAG
i caeRem4.Crem_Contig24 I 60 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    88827 54 -   141934 I

a score=-171.000000
s ce10.chrX             1159387 13 + 17718866 CAACTTCACCTGT
s cb4.chrX                36194 13 + 21540570 GGACACCACCTGT
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24  292078 13 +  1162296 TGAAAACATCTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    88881 11 -   141934 CCATTCTAcct--
i caeSp111.Scaffold514  I 54 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-3318.000000
s ce10.chrX             1159400 14 + 17718866 GACAAATTTTCAAA------------
s caeRem4.Crem_Contig24  292091 25 +  1162296 -GGTAGCCGCCACACAAACATTACCA
i caeRem4.Crem_Contig24 C 0 I 14
s caeSp111.Scaffold514    88892  1 -   141934 ------------------------c-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36207 10 + 21540570 I

a score=-3547.000000
s ce10.chrX             1159414 32 + 17718866 ATTTTCAAATTTA------CACTAGCCTCTTTCTCGGT----
s cb4.chrX                36217 32 + 21540570 ATCTTCACGTTAA----------CACATCTTTGTATGTCCAT
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24  292130 42 +  1162296 CTCTTCCTGCTCAGTTTGCTTTTATCGCCTTCATGTCTTCTA
i caeRem4.Crem_Contig24 I 14 C 0
s caeSp111.Scaffold514    88893 29 -   141934 attttgattttaa----------cgCCTCCTTTCCCATT---
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      399055 1046 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=62655.000000
s ce10.chrX             1159446 194 + 17718866 CCATTTGTGTCCACGTAGAACATCTCGC------AATTTGATAGGTTTAAA----G----CAACAGCAAACATAGACACATCCGA--GACGAGGCTGGGCACACCTAATTTCTGTTAATGCTCC-------------TCGTTTCCCCCAGCCCACTGA--CATGTCCACATTTGAATGTT-----GGCTCCGG-------TGGTCCGGCG---------CAATTAGCTAAACAAACAAACTGTCTT
s cb4.chrX                36249 206 + 21540570 ATATTTGT-TACTCACAGAACA----GCTCTGGGAATTTGATAGTTTTAGA----G----CCACAGCAAACATAGTGACATCCGG--GAAGA-TCGGGACACACCTAATTTCTGTTAATGCTCCTCTCCT-------CGGTCTTTTTCT---------AAATCATTTGCATTTGAATTCT-----CTCCCCACTAAT---TTTCTCTTTGTAATCCtatcaattaacaaaacaaataaacagtttt
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig24  292172 197 +  1162296 CTATTTGT-TTCATGCAGAACA----GC------AATTTGATAGTTTTAGAAGCTA----CCACAGCAAACATAGACACATCCGG----------GGGGCACACCTAATTTCTGTTAATGCTCCTCCCCT-------CCGTTTTTCCTCTCTTGGTAAAGAAGAGTCACGTTTGAATCTT-----TTGCGTTTTAGT---TGGTCCCTTG---------CAATTAACAAAGCAAATAGTCTATCTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    88922 203 -   141934 --ATTTGT-TCCATGCAGAACA----GC------AATTTGATAGTTTTAGT----G----CCAGAGCAAACATAGACACATCCGGATGTGGA-AAGGGACTCACCTAATTTCTGTTAAtgctctccttttttctctgtggTCCCTCCCTTCTCGTCAA-------TCACATTTGAATCTG-----TGCATCTTTGAAACGTTGTCTCTTG---------CAATTAACAAAGCAAACAAACTGTCTT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      400101 203 -   783054 CTATTTGT-TCCACACAGAACATCTCGC------AATTTGATAGTTTTAGA----GGTCCTCACAGCAAACACAGACACATCC------------GAGACACACCTAATTTCTGTTAATGCTCCTCCTTTTTCCCC-TCGTTTTCCTCGACTGGTCCA----GTGTCatgtttgaattttagttCTGCCCCTTT------TGGTCTCTTG---------CAATTAACTAAACAAATAAACTGTCTG
i caePb3.Scfld02_62     I 1046 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-2830.000000
s ce10.chrX             1159640 8 + 17718866 ---GTAGA---ATA
s caeRem4.Crem_Contig24  292369 8 +  1162296 ---TTAGGATT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    89125 8 -   141934 Atgttata------
i caeSp111.Scaffold514  C 0 I 87
s caePb3.Scfld02_62      400304 8 -   783054 TCGTTGAA------
i caePb3.Scfld02_62     C 0 I 3
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36455 117 + 21540570 I

a score=-520.000000
s ce10.chrX             1159648 2 + 17718866 CG-
s caeRem4.Crem_Contig24  292377 2 +  1162296 CG-
i caeRem4.Crem_Contig24 C 0 I 78
s caePb3.Scfld02_62      400315 2 -   783054 -GG
i caePb3.Scfld02_62     I 3 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36455 117 + 21540570 I
e caeSp111.Scaffold514    89133 87 -   141934 I

a score=379.000000
s ce10.chrX             1159650 9 + 17718866 AGAAAGGAT
s caePb3.Scfld02_62      400317 9 -   783054 ATAAGAGAT
i caePb3.Scfld02_62     C 0 I 293
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36455 117 + 21540570 I
e caeSp111.Scaffold514    89133 87 -   141934 I
e caeRem4.Crem_Contig24  292379 78 +  1162296 I

a score=0.000000
s ce10.chrX             1159659 969 + 17718866  
e caePb3.Scfld02_62      400326 293 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36455 117 + 21540570 I
e caeSp111.Scaffold514    89133  87 -   141934 I
e caeRem4.Crem_Contig24  292379  78 +  1162296 I

a score=58.000000
s ce10.chrX             1160628 15 + 17718866 AAAGCCCGGAAGGAC
s caePb3.Scfld02_62      400619 12 -   783054 aaagttagaaag---
i caePb3.Scfld02_62     I 293 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36455 117 + 21540570 I
e caeSp111.Scaffold514    89133 87 -   141934 I
e caeRem4.Crem_Contig24  292379 78 +  1162296 I

a score=300.000000
s ce10.chrX             1160643 1 + 17718866 C
s cb4.chrX                36572 1 + 21540570 C
i cb4.chrX              I 117 C 0
s caeSp111.Scaffold514    89220 1 -   141934 C
i caeSp111.Scaffold514  I 87 C 0
e caePb3.Scfld02_62      400631 0 -   783054 C
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeRem4.Crem_Contig24  292379 78 +  1162296 I

a score=78428.000000
s ce10.chrX             1160644 195 + 17718866 CGTAGGTGAAAAAAGTGGTGGCGAGGCGAAGG-AAGAGTTATGACAAATTTCATTTGTTTGCAATATTTAGACACACATCCCATCCCTTGGGGTGAATGCATCAAGGCTCCTAGCATGCCTTACATTGTTCGAGCAATGACCTCTTCTTGTGCCTAGAGAGATG----GAGAGAGAGGAAGAGACAGA---------GAGTGTACATC--------C
s cb4.chrX                36573 173 + 21540570 CCTaggtgaaaaa-----------------ag-aagagttaTGACAAATTTCATTTGTTTGCAATATTTAGATA-------CATCCCTTGGGGTGAATGCATCAAGGAAACACACATGCCTTATATTGTTCGAGCAATGACCTCTCTCTGT------GCGTTTA----GGAACAAGGGAAAAACGAGGAATAGGAGCAAGGGAAGAAG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  292457 174 +  1162296 CATAggtgaaaaaa-------------aggag-aagagttATGACAAATTTCATTTGTTTGCAATATTTAGACA-------CATCCCTTGGGGTGAATGCATCAAGCCAACATGCATGCCTTACATTGTTCGAGCAATGACCTCTCTCCCTCACATAACGGAcg----ggaaaaagggaaaaaccGGG---------AAGGGAAGATG---------
i caeRem4.Crem_Contig24 I 78 C 0
s caeSp111.Scaffold514    89221 179 -   141934 CATaggtgaaaaa---------------agag-aagagttatgacaaatttcatttgtttgCAATATTTAGATA-------CATCCCTTGGGGTAAATGCATCAAGCCAGCATACATGCTTTACATTGTTCGAGCAATGACCTCTCTGTCTTACATAACGGAAGCTgtgg-gaagaagaaaaacgggg------GGAGACGGGAAAGGA--------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      400631 173 -   783054 cataggtgtaaaa---------------agaaTAGgaattttgacaaatttcatttgtttgcAATATTTAGACA-------CATCCCCTGGGGTGAATGCATCAAGCC----CACATGCCTTACATTGTTCGAGCAATGACCTCTCTGCCTTACATAACGGAcatggtggtggaggagaaaAACGGGG-----------------AGGGTGCTTCT-
i caePb3.Scfld02_62     C 0 I 13
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-3545.000000
s ce10.chrX             1160839 13 + 17718866 -----AGAGTCATCCC-AT----
s cb4.chrX                36746 16 + 21540570 AGTCGAAGG----CTCGCTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  292631 12 +  1162296 G---GAGGG----CTC-CTT---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    89400 13 -   141934 -----AGAG----CTC-TTTCTT
i caeSp111.Scaffold514  C 0 I 9
e caePb3.Scfld02_62      400804 13 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=55215.000000
s ce10.chrX             1160852 105 + 17718866 -CTCCCCCCTC----------ATTCCCATCG-CTTCTCAATTCTTGTATTTGTTTTCT-CGAAATAGGTGTTGAAAGTGTTGCCTCTTGGGACAC----------------------CCGTTAGTCTATGTTTTATTGAA
s cb4.chrX                36762 137 + 21540570 CTTTGTACATCAGTCCTTTCGTTTCCCATCG-CATTTCAATTCTTGTATTTGTTCTCT-CGAAATAGGTGTTGAAATTGTTGCCTCTTGGGAGacgaattttatttttcttt-tactcCGTTACTCTTTGTCGTATTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  292643 134 +  1162296 CTTCGTACATCATTCCTTC--TTTCCCATCG-CTTCTCAATTCTTGTATTTGTTTTCT-CGAAATAGGTGTTGAAATTGTTGCCTCTTGGGACAC--ATTTCATTTTCCTCGACTCTCTTTTACTCTTTGTTTTATTGGA
i caeRem4.Crem_Contig24 C 0 I 501
s caeSp111.Scaffold514    89422 124 -   141934 -TTTCCCTATC----------CCATGCATCGTCTTCTCGATTCTtgtatttgttttct-tgaaatagGTGTTGAAATTGTTGCCTCTTGGgacac--attttatttttctc--tactTCAATTCTCTTTGTTCTATTGAA
i caeSp111.Scaffold514  I 9 C 0
s caePb3.Scfld02_62      400817 118 -   783054 -TTCCCCTATC----------CTTCCCATTG-CTTCTAGATTCTTGTATTTGTTTTCTAAGAACTAGGTGTTGAAATTGTTGCCTCTTGGGACA--------ATTTTTTAC--TCTTCGAGCACTCTTTCTTTCATTGAA
i caePb3.Scfld02_62     I 13 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=-1904.000000
s ce10.chrX             1160957  9 + 17718866 ---------------------TTTTGCCGA
s cb4.chrX                36899  9 + 21540570 ---------------------CGCTTCCAA
i cb4.chrX              C 0 I 3624
s caeSp111.Scaffold514    89546 16 -   141934 A--------------TTGCcaattttctaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      400935 30 -   783054 AACCCCCCGTTTTTCCAACCAATCTCCTAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeRem4.Crem_Contig24  292777 501 +  1162296 I

a score=-802.000000
s ce10.chrX             1160966 20 + 17718866 GCGCACTCACTTTGTTAAAT
s caeSp111.Scaffold514    89562  2 -   141934 at------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      400965 20 -   783054 ATGCGCTCgctttttttaat
i caePb3.Scfld02_62     C 0 I 274
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36908 3624 + 21540570 I
e caeRem4.Crem_Contig24  292777 501 +  1162296 I

a score=519.000000
s ce10.chrX             1160986 9 + 17718866 TAACTCTCC
s caeSp111.Scaffold514    89564 9 -   141934 gaaCTTTCC
i caeSp111.Scaffold514  C 0 I 516
e caePb3.Scfld02_62      400985 274 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36908 3624 + 21540570 I
e caeRem4.Crem_Contig24  292777 501 +  1162296 I

a score=0.000000
s ce10.chrX             1160995 1173 + 17718866  
e caePb3.Scfld02_62      400985  274 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36908 3624 + 21540570 I
e caeSp111.Scaffold514    89573  516 -   141934 I
e caeRem4.Crem_Contig24  292777  501 +  1162296 I

a score=635.000000
s ce10.chrX             1162168 20 + 17718866 CATGTCAAATCTGTCGTGTG
s caeRem4.Crem_Contig24  293278 20 +  1162296 CGTGTCAAATCTCTGCCGCC
i caeRem4.Crem_Contig24 I 501 C 0
e caePb3.Scfld02_62      400985 274 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36908 3624 + 21540570 I
e caeSp111.Scaffold514    89573 516 -   141934 I

a score=776.000000
s ce10.chrX             1162188 227 + 17718866 TGCCTTGATGAGTTTTGTGGTGGGGGTTGCCAATTCAATTTA---GTGCCCAATAGCCACCGACAATCTCATATTCTTTGTGATTT---TCTAAA------------TAGCTCCAAATA-------TTTACCCCATCCGCTTT---CCGTACCCAA--AATATGTCAAA-AAGTAGGTTCAAAT--------TATG-----------AAGAA---AAATTTGAAAAATGCAAATTGTTCCATTAAAA----------TTCAAAAAGCTGTGATGA--------GATGACACT------------TTGAAC-----
s caeRem4.Crem_Contig24  293298 264 +  1162296 TCGCTTGATGAG-TTTGTGGAAGG------CAATTCAATTTA-----GCCGA--AACCACCGacaatctt--------tttgattt---tcaaaacgtgCCCT-TTCTGGGTTC---------TTTCTTATTGAACCAACTTCCAACTTCCTCCAG--AATGCTCAAAATAAGTATGTCACATTTGGTTTCATTTACATTCTaagcgaaaaa---aaatgagaaga---tcaatttttgaatttaaattttgtttcgTTCAAGGTCCCACTCCAA--------GATAAAAATTGcatcaatttctcaaattgaac
i caeRem4.Crem_Contig24 C 0 I 21
s caePb3.Scfld02_62      401259 275 -   783054 TGCCTTGATGAGTTTTGTGGCCGG------CAATTCAATTTACGGCTGCCG------CACCGACAATCTC--------TGTGATTTCCCTCAAAACGTGCCCTATTTTGGGTTCAAATactcttttcttcctccacCAACAATAGGCTGATATTAGGAAATGTTTAAACAAAGTATGTTTTATTATGCT---TGTGTCTCCTGATCCAGGAattcaaatgcaaaaaattctaatttgtaatttcaaaattctatgaattttaatctcgaattcagttttttgtgacAAAAAT------------TCGAGT-----
i caePb3.Scfld02_62     I 274 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                36908 3624 + 21540570 I
e caeSp111.Scaffold514    89573 516 -   141934 I

a score=-216.000000
s ce10.chrX             1162415 15 + 17718866 --------TTTCTAAGAGGAAGA
s cb4.chrX                40532 15 + 21540570 --------tttcaaaacaaaaga
i cb4.chrX              I 3624 C 0
s caeRem4.Crem_Contig24  293583 15 +  1162296 --------Tgtcaaaagacaaaa
i caeRem4.Crem_Contig24 I 21 C 0
s caePb3.Scfld02_62      401534 16 -   783054 GGGTTTgtggtcaaaa-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e caeSp111.Scaffold514    89573 516 -   141934 I

a score=31048.000000
s ce10.chrX             1162430 78 + 17718866 CAATTTTTG--------GTGGGACCATC-------CCTTCCAAGTGGTAACAAATTGGTTCAGAGAGTTGACTGATTCCCATAGGGTGAATTT
s cb4.chrX                40547 73 + 21540570 -cATGTGC---------TTGCGACCAGC----------TTTGTGTGGGGACAAATTGGTTTGGAAACATGACTGATTCCCTTAGGATAAATTT
i cb4.chrX              C 0 I 173
s caeRem4.Crem_Contig24  293598 92 +  1162296 -aatcttCCCTTGTCTTTGGTGACCGACGTTTCGTTTTCTTAAGTTGAAACAAATTGGTTCGGAGAGTTGACTGATTCCCATAGGGTGAATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    90089 79 -   141934 cattttttc--------tgggaaCCAACA------TTTCTTAAGTTGAAACAAATTGGTTCGGAGAGTTGGCCGATTCCCAAAGggtagaatt
i caeSp111.Scaffold514  I 516 C 0
s caePb3.Scfld02_62      401550 85 -   783054 aaattttccggt-----tGGTAAccgacgtt---tttttttaacttgaaACAAATTGGTTCGGAGAGTTGACCGATTCCCATAGGGTGAATTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   40973 2666 -   140921 I

a score=2530.000000
s ce10.chrX             1162508 21 + 17718866 GTGGCCAAAAAACTTACCCAC
s caeRem4.Crem_Contig24  293690 20 +  1162296 GTGA-AAACTGCCTTACCCAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    90168 21 -   141934 ttgaaaaactgctTCATCCAC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      401635 15 -   783054 GTGA------GCCTTActcac
i caePb3.Scfld02_62     C 0 I 73
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                40620 173 + 21540570 I

a score=848.000000
s ce10.chrX             1162529 4 + 17718866 TCTT
s caeRem4.Crem_Contig24  293710 4 +  1162296 TTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    90189 4 -   141934 TTTT
i caeSp111.Scaffold514  C 0 I 54
e caePb3.Scfld02_62      401650 73 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                40620 173 + 21540570 I

a score=91.000000
s ce10.chrX             1162533 1 + 17718866 A
s caeRem4.Crem_Contig24  293714 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 I 92
e caePb3.Scfld02_62      401650 73 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                40620 173 + 21540570 I
e caeSp111.Scaffold514    90193 54 -   141934 I

a score=0.000000
s ce10.chrX             1162534 516 + 17718866  
e caePb3.Scfld02_62      401650  73 -   783054 I
e caeJap4.Scaffold17966   40973 2666 -   140921 I
e cb4.chrX                40620 173 + 21540570 I
e caeSp111.Scaffold514    90193  54 -   141934 I
e caeRem4.Crem_Contig24  293715  92 +  1162296 I

a score=772.000000
s ce10.chrX             1163050 41 + 17718866 GTAAAAAGTTGAGCATTGTAAAAAAGTTTGAGCAACCAATA
s caeJap4.Scaffold17966   43639 29 -   140921 GCAAAAAGTTCAACATTcaaaagaaattt------------
i caeJap4.Scaffold17966 I 2666 C 0
e caePb3.Scfld02_62      401650 73 -   783054 I
e cb4.chrX                40620 173 + 21540570 I
e caeSp111.Scaffold514    90193 54 -   141934 I
e caeRem4.Crem_Contig24  293715 92 +  1162296 I

a score=858.000000
s ce10.chrX             1163091 7 + 17718866 TTGATGa
s caeSp111.Scaffold514    90247 7 -   141934 tttatga
i caeSp111.Scaffold514  I 54 C 0
s caeJap4.Scaffold17966   43668 6 -   140921 -ttatta
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      401650 73 -   783054 I
e cb4.chrX                40620 173 + 21540570 I
e caeRem4.Crem_Contig24  293715 92 +  1162296 I

a score=-283.000000
s ce10.chrX             1163098 5 + 17718866 --atttt
s caeRem4.Crem_Contig24  293807 5 +  1162296 --ATCTA
i caeRem4.Crem_Contig24 I 92 I 1
s caeSp111.Scaffold514    90254 5 -   141934 --atttg
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   43674 5 -   140921 atatt--
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      401650 73 -   783054 I
e cb4.chrX                40620 173 + 21540570 I

a score=-3799.000000
s ce10.chrX             1163103 31 + 17718866 tttagtttaaatattttcacaattttattat
s caeRem4.Crem_Contig24  293813 28 +  1162296 TCAGTTTAATTTGATTAACCATATTAAT---
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    90259 29 -   141934 ttttttttattgatttttgatttttaatt--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      401723 31 -   783054 TCTAGTTAGTTTACGTTAACAgttcaattac
i caePb3.Scfld02_62     I 73 I 5
s caeJap4.Scaffold17966   43679 14 -   140921 --------------tttaaCACGATGGT---
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                40620 173 + 21540570 I

a score=135479.000000
s ce10.chrX             1163134 179 + 17718866 ataacattttttCAGAACTAGGAGGCGGCGGTGGCGGAGTGTTAAGCGGTGTGGCGTGCATCGTAACACCCACTCTTGCTCCGACGACTATCAAAATGCAGGAAGCGGCAAGGAGAGCGTCGCTACGCAAGGAGCACACGCCAACAAATGAAAAGTTTGGAGATTTGTCAAAGCAGGTA
s cb4.chrX                40793 174 + 21540570 atgaaaa--attcagagcTTGGT---GCCGGTGGCGGTGTGGCAAGCGGCGTGGCGTGTATTGTGACACCAACACTTGCTCCGACTACCGTCAAAATGCAGGAAGCGGCTAGAAGAGCATCGTTGAGGAAAGAACACACACCTACGaacgaaaaatttggagatttgTCGAAACAGGTG
i cb4.chrX              I 173 C 0
s caeRem4.Crem_Contig24  293841 174 +  1162296 ATTGCAA--TTTCAGAACTTGGA---AGTGGTGGCGGAGTGGCTAGCGGTGTTGCGTGTATTGTAACACCTACACTTGCTCCGACAACGGTCAAGATGCAGGAGGCAGCAAGGAGAGCATCGTTGAGAAAAGAACACACTCCGacgaatgaaaaatttggagattTGTCGAAACAGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    90288 168 -   141934 -tttca-------agaacaCGGC---AGTGGTGGAGGAGTGGCGAGTGGTGTGGCGTGTATTGTAGCACCCACTCTTGCCCCGACGACTGTCAAAATGCAGGAAGCGGCTAGAAGGGCATCGTTACGGAAGGATCAGACACCGACTAATGAAAAGTTCGCAGATTTGTCAAAACAggta
i caeSp111.Scaffold514  C 0 I 135
s caePb3.Scfld02_62      401759 173 -   783054 atttgaa---ttcagaacTCGGA---AGCGGTGGTGGAGTGGCAAGTGGTGTGGCGTGTATTGTAACACCCACTCTTGCACCGACGACTGTCaagatgcaagaggcggcaaGAAGGGCATCGTTGAGAAAAGAGCACACACCGactaatgaaaaatttggagactTGTCAAAACAGGTG
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold17966   43693 155 -   140921 ---------TTTCAGAACTAGGA---AGTAGTGAAGGAGTGGCTAATGGTGTGGCTTGTATAGTAGCACCAATACTTGCTCCAACGACAGTAGCCATGCAAGAAGCAGGACGAAGAGCTTCTCTGAAAAAGGAAGTCACCCCTA------------TTGCTGATATTTCGAAACAGGTA
i caeJap4.Scaffold17966 C 0 C 0

a score=-1939.000000
s ce10.chrX             1163313  6 + 17718866 GGT-----GCT
s cb4.chrX                40967 11 + 21540570 AGccagtaatt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  294015  6 +  1162296 AGC-----ACT
i caeRem4.Crem_Contig24 C 0 I 220
s caePb3.Scfld02_62      401932  6 -   783054 AAT-----ATT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   43848  6 -   140921 -----TGAGTT
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    90456 135 -   141934 I

a score=546.000000
s ce10.chrX             1163319 1 + 17718866 T
s cb4.chrX                40979 1 + 21540570 t
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_62      401938 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   43854 1 -   140921 T
i caeJap4.Scaffold17966 C 0 I 442
e caeSp111.Scaffold514    90456 135 -   141934 I
e caeRem4.Crem_Contig24  294021 220 +  1162296 I

a score=300.000000
s ce10.chrX             1163320 1 + 17718866 G
s cb4.chrX                40980 1 + 21540570 g
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      401939 1 -   783054 G
i caePb3.Scfld02_62     C 0 I 111
e caeJap4.Scaffold17966   43855 442 -   140921 I
e caeSp111.Scaffold514    90456 135 -   141934 I
e caeRem4.Crem_Contig24  294021 220 +  1162296 I

a score=487.000000
s ce10.chrX             1163321 45 + 17718866 AAATGGGCAATTTGTGTGGGATTCGTTTTTAGAGTTCACTTTCCA
s cb4.chrX                40981 42 + 21540570 aaaaatcaaagttgtatacatttgattttttg---ttgcttttca
i cb4.chrX              C 0 I 210
e caePb3.Scfld02_62      401940 111 -   783054 I
e caeJap4.Scaffold17966   43855 442 -   140921 I
e caeSp111.Scaffold514    90456 135 -   141934 I
e caeRem4.Crem_Contig24  294021 220 +  1162296 I

a score=0.000000
s ce10.chrX             1163366 1339 + 17718866  
e caePb3.Scfld02_62      401940  111 -   783054 I
e caeJap4.Scaffold17966   43855  442 -   140921 I
e cb4.chrX                41023  210 + 21540570 I
e caeSp111.Scaffold514    90456  135 -   141934 I
e caeRem4.Crem_Contig24  294021  220 +  1162296 I

a score=91.000000
s ce10.chrX             1164705 1 + 17718866 T
s cb4.chrX                41233 1 + 21540570 t
i cb4.chrX              I 210 C 0
e caePb3.Scfld02_62      401940 111 -   783054 I
e caeJap4.Scaffold17966   43855 442 -   140921 I
e caeSp111.Scaffold514    90456 135 -   141934 I
e caeRem4.Crem_Contig24  294021 220 +  1162296 I

a score=-37.000000
s ce10.chrX             1164706 3 + 17718866 TTT
s cb4.chrX                41234 3 + 21540570 tat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  294241 3 +  1162296 TTA
i caeRem4.Crem_Contig24 I 220 C 0
e caePb3.Scfld02_62      401940 111 -   783054 I
e caeJap4.Scaffold17966   43855 442 -   140921 I
e caeSp111.Scaffold514    90456 135 -   141934 I

a score=75577.000000
s ce10.chrX             1164709 82 + 17718866 TTTCAGGATTCGTTGGGAGAAAGAGCGTCTTCAAAACTCACCTTGGATGATGAACTCTATGACATTCTCTACGCGTTTGGGT
s cb4.chrX                41237 82 + 21540570 tttcaggattctctTGGAGAGCGCGCATCGTCAAAATTAACTTTGGACGATGAGCTTTATGACATCCTTTATGCTTTTGGGT
i cb4.chrX              C 0 I 442
s caeRem4.Crem_Contig24  294244 82 +  1162296 TTTCAGGATTCTCTCGGAGAGCGTGCGTCTTCAAAACTAACGCTAGATGACGAATTATATGATATCCTATACGCATTTGGGT
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold514    90591 82 -   141934 TTTCAGGACTCGCTTGGAGAACGGGCTTCTTCGAAACTCACCTTAGATGACGAGCTCTATGATATTCTTTATGCCTTTGGGT
i caeSp111.Scaffold514  I 135 I 221
s caePb3.Scfld02_62      402051 82 -   783054 TTGCAGGATTCACTTGGAGAACGTGCGTCTTCGAAACTTACTCTTGATGATGAACTCTACGATATTCTTTATGCTTTTGGGT
i caePb3.Scfld02_62     I 111 I 7
s caeJap4.Scaffold17966   44297 80 -   140921 TTTCAGGATTCTCTTGGAGAACGTGCATCATCGAAACTAACACTTGACGATGAATTGTATGACATTCTTTACGCGTTTGG--
i caeJap4.Scaffold17966 I 442 C 0

a score=-1899.000000
s ce10.chrX             1164791 24 + 17718866 TTGTTAATTTTTA-----TTTAGTTTTCA
s caeRem4.Crem_Contig24  294333 23 +  1162296 TCATAAATCATAA--ATCGttggtc----
i caeRem4.Crem_Contig24 I 7 C 0
s caePb3.Scfld02_62      402140 27 -   783054 tcttttttttttg--atttgcgGTTTTTA
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold17966   44377 27 -   140921 --GTGAGTTTTTATTAtacatatttttca
i caeJap4.Scaffold17966 C 0 I 225
e cb4.chrX                41319 442 + 21540570 I
e caeSp111.Scaffold514    90673 221 -   141934 I

a score=-345.000000
s ce10.chrX             1164815 21 + 17718866 TGATGGTGGCTGAGAATTCAA
s caeRem4.Crem_Contig24  294356  8 +  1162296 ------------aaaaatta-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      402167 21 -   783054 GTGaagtaattgaaaatttaa
i caePb3.Scfld02_62     C 0 I 588
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I
e caeSp111.Scaffold514    90673 221 -   141934 I

a score=1061.000000
s ce10.chrX             1164836 79 + 17718866 GTGTATTATTTCTTGAACCAGCTATGGGAGACCTCCTCAATTTAAGCCATTGCTATCGCAAAAAAATT-GATTTTGGAAA
s caeRem4.Crem_Contig24  294364 77 +  1162296 ttaaataaTTATTCGTAC---CTATGGAAAGATATCATAACTCAATATTTcactatctttgaaaaattagatatTAGAAA
i caeRem4.Crem_Contig24 C 0 I 155
e caePb3.Scfld02_62      402188 588 -   783054 I
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I
e caeSp111.Scaffold514    90673 221 -   141934 I

a score=0.000000
s ce10.chrX             1164915 877 + 17718866  
e caePb3.Scfld02_62      402188 588 -   783054 I
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I
e caeSp111.Scaffold514    90673 221 -   141934 I
e caeRem4.Crem_Contig24  294441 155 +  1162296 I

a score=2048.000000
s ce10.chrX             1165792 128 + 17718866 CCAACTGGTGACAAAAAATTGGTGGTGCAAGTGGGTGTTCTTTTGCACATCACCCATC--------AGGCCCCATCTCAAAAAGTTCTTGTAATAATTCCCTCGAGGGAGCATTTGAAC-----AGCAACCTCCCCCCTCC
s caeRem4.Crem_Contig24  294596 137 +  1162296 CCAAACGGTGACaaaaaaaCTCGAG---AAATGGGTGTTCTTCT-CAAATCTTGCATCTTTTTACTATTGTTCATCTTTGAGAATACCCTTGGATATGCTCTCAAGGGAGACTTTGAACCAGAGAAGAATCATTCCATTCC
i caeRem4.Crem_Contig24 I 155 C 0
e caePb3.Scfld02_62      402188 588 -   783054 I
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I
e caeSp111.Scaffold514    90673 221 -   141934 I

a score=-656.000000
s ce10.chrX             1165920  7 + 17718866 -------CACCAAC---
s caeRem4.Crem_Contig24  294733 17 +  1162296 TCTAGAACAAAACCCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    90894  7 -   141934 -------CACAAAC---
i caeSp111.Scaffold514  I 221 I 1
e caePb3.Scfld02_62      402188 588 -   783054 I
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I

a score=-1415.000000
s ce10.chrX             1165927 164 + 17718866 CCAGAAAGCTTTTTGACGAAAATATATATTCGC------TGCTTCTAATAGATTTCGAAAAGAATTTTGAAAAATTTCACTCCAAGCGGGAGAAGCAAACAAAAAAAAA--------CAGAACAACTACGACTGTTCCCATCACCCCC--------TCCCGGGTGTGCTCT-----TCC--------AATTTTTCTCAT---
s caeRem4.Crem_Contig24  294750 151 +  1162296 TGCCAATGCGTTTTgaa-gaaatatatttt---------tgtgtCTAATagatttcaaacaaaacga-----------------------------aaacgaagaaaaaa-------gacaccAACTA---CTGTTCCCAT--TTGCCGCAAAGCTGTCTGGGTACCCGCTATCACTCCCACTATTCCATCCTTCCCAACCC
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514    90902 129 -   141934 TCTCAATGCTTTTGAAC-AAAATACATTCTCggttttgatatttttgaaaaacaccCCTAAACAccg-----------------------------aaacaagaa------------gaaaccAACCA----------------TGCC--------AGCAGTGT-CTCTCT-----TCCCATCAGCAaaatcttttcaatt-
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      402776 139 -   783054 CCCAAATGCTTTTTAAC-AACATATATTCTCAG------TGGTTCTAataaattctttcaaaaagtg-----------------------------ggaaaagaaaaaaggtggCGGGAAACCTACTG------TTCCCAT--TTGCC--------GTCTGGGTACTCCCA-----TCTCATCAACGAATCCTT-----TC-
i caePb3.Scfld02_62     I 588 C 0
e caeJap4.Scaffold17966   44404 225 -   140921 I
e cb4.chrX                41319 442 + 21540570 I

a score=57323.000000
s ce10.chrX             1166091 89 + 17718866 TTTTCCCAGGG--CCAGTAGAGCTCC------------CAGGCGGGAGAGACACATTCATTATTGAGTTGTCAAGAGGTGTGTATGAGCAACT-GGAGCAAAAG------
s cb4.chrX                41761 95 + 21540570 -TTTCCCAAGAA-CTCGTGGGTTTCCCATTCATTTCTTCAGGCGGGAG----ACATTTATTATTGAGTTGTCAGTG---GTGTATGAGCGGCtgggagaaaaag------
i cb4.chrX              I 442 C 0
s caeRem4.Crem_Contig24  294902 93 +  1162296 -TTTCCCAGGGA-CCAGTGGGTTTCCCATTCATTTCTTCAGGCGGGAG----ACATTTATTATTGAGTTGTCAGAG---GTGTATGAGCAGCCAGTCGGACA--------
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    91031 96 -   141934 ctttcgcCGAAA-CCAGCGGCTTTcccattcatttcttcaagCGGGAG----ACATTTATTATTGCGTTGTCAAAG---GTGTATGAGCGGCTGGGAGCCCGCG------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      402915 91 -   783054 TTTTCCCAGAGACCCAGCGGCTTTcccattcatttcttcaggCGGGAG----ACATTTATTATTGAGTTGTCAGAG---GTGTATGAGCAACC-AGAGC-----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   44629 95 -   140921 TCTTCCCAGGA--CCAGTGGCTTTCTCATTCA-TTCTAGAGACAAGAG----ACATTCATTATTGAGTTGTCCAAG---GTGTATGAG-AGCC----GCAAGTGTCTATT
i caeJap4.Scaffold17966 I 225 I 65

a score=-5886.000000
s ce10.chrX             1166180  6 + 17718866 AGCATC---------------------------
s cb4.chrX                41856 33 + 21540570 aagaaaaacgggaGAAGATAGCAAGAGATCATC
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig24  294995 16 +  1162296 -----------GAGGAGAT------AGAGCATC
i caeRem4.Crem_Contig24 C 0 I 14
s caeSp111.Scaffold514    91127 10 -   141934 AAAAAGACTC-----------------------
i caeSp111.Scaffold514  C 0 I 20
e caePb3.Scfld02_62      403006  0 -   783054 C
e caeJap4.Scaffold17966   44724 65 -   140921 I

a score=-4532.000000
s ce10.chrX             1166186 17 + 17718866 TCCCCTCTCG-------------------------TACGCTA----------
s cb4.chrX                41903 17 + 21540570 -----------------------------------AACGCActtgtaatttt
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig24  295025 17 +  1162296 -----------------------------------AGCGCACTTGTAATCCG
i caeRem4.Crem_Contig24 I 14 C 0
s caePb3.Scfld02_62      403006 38 -   783054 ----CTCTCGCGGGAAACACTGTGTAGTAGACGGAAACGCAC----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   44724 65 -   140921 I
e caeSp111.Scaffold514    91137 20 -   141934 I

a score=-1534.000000
s ce10.chrX             1166203 19 + 17718866 TTCTTTTCTTTTTTTTCCG-----
s cb4.chrX                41920 20 + 21540570 caatttccaaatctttCTGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  295042 23 +  1162296 CTGTTT-CAACTCTTTTTTATCAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    91157 19 -   141934 cttttttcttgttcttggG-----
i caeSp111.Scaffold514  I 20 I 38
s caePb3.Scfld02_62      403044 19 -   783054 TTTTTTCCGTCTTTTTATC-----
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966   44724 65 -   140921 I

a score=-2775.000000
s ce10.chrX             1166222 26 + 17718866 -CCGCTGG--------------TCCCAAAAAATTGCTAATA
s cb4.chrX                41940 23 + 21540570 -CTTTCGA--------------ATC--ATAAATGCAGC-CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  295065 39 +  1162296 TCTTTTGATCTTATTCCATTCTTCC--AAAAATCTACTACA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      403064 24 -   783054 -GTGTCGA--------------ATC--AAAAATCGTTGTCA
i caePb3.Scfld02_62     I 1 I 1
e caeJap4.Scaffold17966   44724 65 -   140921 I
e caeSp111.Scaffold514    91176 38 -   141934 I

a score=1386.000000
s ce10.chrX             1166248 3 + 17718866 ATT
s cb4.chrX                41963 3 + 21540570 ACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  295104 3 +  1162296 ATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    91214 3 -   141934 ATT
i caeSp111.Scaffold514  I 38 C 0
s caePb3.Scfld02_62      403089 3 -   783054 ATT
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17966   44724 65 -   140921 I

a score=126643.000000
s ce10.chrX             1166251 234 + 17718866 ATGATATAAATTTTTGACATATTT-ACTCTTTTATTCTGTAC------------ATCAGTGTTACATATGGAAACACTACCCGAAGGATTGCAAAATAACCCACTAGTCCAGAGAAGAGCCTCAGTATTCCATGACTTGATAACGGTTTTCCGGAAGAATACGGCTCACCGGTTAGCTCATAACACCCTAGATC-CATTCTCATCGCCTTTTATTCCATGGAGTGCAAACCCTGCTCAGCCGTGAGTT
s cb4.chrX                41966 213 + 21540570 ATGTTATAACT-------AGAT---ATTTTCCA---ATTCGCG-----------ATGAACG----GAATTGAAATTCTTCCCGAAGGACTTCGAAATAATCCTCTAGTTCAAAGGCGAGCATCTGTTTTTCACGACTTGATAACtgtatttcggaaaaatacAACTCAACGATTCGTTCAAAATACTCTAGACC-CATTC---TCCCCTATTATTCCATGGACTGCAAACT---ACCAACCGTAAGTT
i cb4.chrX              C 0 I 134
s caeRem4.Crem_Contig24  295107 221 +  1162296 ATGTTATAACT-------ATATTC-ATACTCTATTCGTTCGAT-----------ATGAACG----GGATGGAACTTCTACCAGAGGGACTGCAAAATAACCCACTGGTTCAAAGAAGAGCatcagtttttcatgatttgaTAAcggttttccgaaaaaacacCACCCATCGGCTAGTTCAAAATTCATTCGACC-CTTTTGCATCACCTTTTATTCCATGGAGCACAAATA---CTCAACCGTAAGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    91217 222 -   141934 ATGATATAACT-------ATATTCCTCACTACTTTTGTTCACT-----------ATGAACG----GGATCGAAATTCTACCAGAGGGGTTGCGAAACAATCCTCTCGTGCAAAGACGAGCCTCAGTGTTTCATGATTTAATAACAGTCTTTCGCAAAAATACTGCTCACAAGCTTGCTCAAAACACTTTTGACC-CATTTTCCTCACCACTGATTCCATGGAGGGCCAATC---CACAGCAGTAAGTT
i caeSp111.Scaffold514  C 0 I 294
s caePb3.Scfld02_62      403092 232 -   783054 ATGATG-AACT-------ATTTTCTGCTTTTATAATGCCCACTATCACTCCAAAATGAACG----AAATGGAAGTTCTACCTGAAGGATTGCGAAACAATCCACTCGTTCAGAGAAGAGCATctgtttttcatgatttgataacagtttttcggaaaaatactGCTCATCGGTTAGCTCAGAACACTCTAGACC-CGTTCTCCTCCCCTTTCATTCCATGGAGTGCGAATC---CACAGaagtaagtt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   44789 212 -   140921 ATGACATAGTA-------TTGTTTCTCACTTACACTGtt---------------atgagcg----gaatagaagtTCTACCGGAAGGATTGCAAAATAATCCTCTAGTTCAACGCCGAGCTTCTGTGTTTCTTGATCTTATAacagtttttcggaaaaacaCTGTTCATCGATTAGCTCAAAATACTCATGATCACATTCCCAATAGGCCTGAGT-CATGGGGCTCAATTC---------AGTGAGTT
i caeJap4.Scaffold17966 I 65 C 0

a score=546.000000
s ce10.chrX             1166485 1 + 17718866 T
s caeRem4.Crem_Contig24  295328 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      403324 1 -   783054 t
i caePb3.Scfld02_62     C 0 I 387
s caeJap4.Scaffold17966   45001 1 -   140921 T
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I

a score=-163.000000
s ce10.chrX             1166486 5 + 17718866 TTAAT
s caeRem4.Crem_Contig24  295329 5 +  1162296 TAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   45002 5 -   140921 ATAGT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      403325 387 -   783054 I
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I

a score=251.000000
s ce10.chrX             1166491 27 + 17718866 TTT----------TTTTTCCTGTTCCTG--ACTTAAAAA
s caeRem4.Crem_Contig24  295334 39 +  1162296 TGTAATCCTGCACTTTTTTAAGTTCCagtcatttaaaaa
i caeRem4.Crem_Contig24 C 0 I 281
e caePb3.Scfld02_62      403325 387 -   783054 I
e caeJap4.Scaffold17966   45007  0 -   140921 C
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I

a score=0.000000
s ce10.chrX             1166518 740 + 17718866  
e caePb3.Scfld02_62      403325 387 -   783054 I
e caeJap4.Scaffold17966   45007   0 -   140921 C
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I
e caeRem4.Crem_Contig24  295373 281 +  1162296 I

a score=836.000000
s ce10.chrX             1167258 15 + 17718866 CCCCCCCCCCCCTCC
s caeRem4.Crem_Contig24  295654 15 +  1162296 ctcctcctcctctct
i caeRem4.Crem_Contig24 I 281 C 0
e caePb3.Scfld02_62      403325 387 -   783054 I
e caeJap4.Scaffold17966   45007  0 -   140921 C
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I

a score=553.000000
s ce10.chrX             1167273 12 + 17718866 --TCCCCCTCCCAA
s caeRem4.Crem_Contig24  295669 12 +  1162296 --tctccctcctAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      403712 12 -   783054 tttctccgCCCG--
i caePb3.Scfld02_62     I 387 C 0
e caeJap4.Scaffold17966   45007  0 -   140921 C
e cb4.chrX                42179 134 + 21540570 I
e caeSp111.Scaffold514    91439 294 -   141934 I

a score=573.000000
s ce10.chrX             1167285 2 + 17718866 CA
s caeSp111.Scaffold514    91733 2 -   141934 CA
i caeSp111.Scaffold514  I 294 C 0
s caePb3.Scfld02_62      403724 2 -   783054 CA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   45007 0 -   140921 C
e cb4.chrX                42179 134 + 21540570 I
e caeRem4.Crem_Contig24  295681 0 +  1162296 C

a score=92843.000000
s ce10.chrX             1167287 158 + 17718866 ATCAACGAAATATCTTGCCGCAACACGACAAATCAATGAGTGATAAATCTTCGGGTCTCCTATCATTACAACAACGTAATGTTGCATCACATCAAAA-GCCTCGATGGAC-TTTTTTTGTGTTACGTA-GGCACTC-TCGTATCTCATAAAACGTCAAAAAT
s cb4.chrX                42313 147 + 21540570 ATCAACAAA--CTTTTTCCGCAATCCG---AATCAATAAGTAGTAAATCTTCTGGCTTTCTATCATTAC-ACTACGTAATGTTGCATCACATTAAAACGCCTC-ATGGGCttttt------ttACGTACGGCACTCTTC--AACTCATaaaacgtcaaaaat
i cb4.chrX              I 134 I 168
s caeRem4.Crem_Contig24  295681 144 +  1162296 -TCAACGAAATCCTTCCCCGCAACGCG---AATCAATAAGTGATAAATCTTCTGGTCTCCTATCATTAC-ACAACGTAATGTTGCATCACATCAAAA-GCCTC-ATGGGC-TTTT------TTACGTA-GGCACTC-TC--ATCTCATAAAACGTCAAAAAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    91735 144 -   141934 ATCAACAGAA-ATCTCTCCTCAACTTG---AATCAATAAGTGATGAATCTTCTGGTGCCCCATCATTAC-ACAACGTAATGTTGCATCACATCAAAA-GCCTC-ATGAGC-TTTT------TTACGTA-GGCACTT-CC--ATCTCAtaaaacgtcaaaagt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      403726 144 -   783054 ATCAACGGAG-ATTTTTCCGCAAGTTG---AATCAATAAGTGATAAATCTTCTGGTCTCCTATCATTAC-ACAACGTAATGTTGCATCACATCAAAA-GCTTC-ATGGGC-TTTT------TTACGTA-GGCACTC-TC--ATCTCATAAAACGTCAAAAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   45007   0 -   140921 C

a score=-41991.000000
s ce10.chrX             1167445 385 + 17718866 GCCGCCTAAAAACACGAGGAAATGTGTATTTGTGTGTGTGTTTTTGTTTGAATTGTTGGCTGTTTTGCAACAACAAAAAATGGGTGCAACAGGGGAATTAAAAAAATG-------------TTCCAATAAAACTTGCGCAATTAGAA-------------------ATTTATTTTAAAT-----ACT-ATTGCTCTTAAAAGTTGCAGGATGAGAAAAAAAAGTTAAAAGTTAAAAACAACATTTTCAAAATTTGAAGTAAAATGTTCATATTTCAAATGGGAAAAAATGATCGATAGGCAAGTCCTAAGGCCTCAGTCCTGCTTGCCTACGTGCCTATTCAACGCCTACGATCAAAAATACTTCAAGTTACTTCAC-TGAATTGATTTATTTAACTTGGTAATGCAATTTCACAGCAATTCAA
s caeRem4.Crem_Contig24  295825 220 +  1162296 GCCGCCC-AAGACATg-gaaaaaatgacgt----------tttttg--------------cATTCTAC-----------TTGGATGGGAT--AAAAACTAGAAGGATAACTATTGGAAGTATTGAGAGATGACCTTTG-AACGAGGgata----------------ttttaatttaaat-----aaTGAGTGGAATTCA------------------------------------------ATTTTAG----------TGAAATGTTTGTCTGGGaattgaaactagaa--------------------------------------------------------------aaaaaagagtgttcCaaaaaaaCCAC-TCAA---------------------------TTAATAAAGACT-AG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    91879 161 -   141934 gtcgttcaaaatcata---aaatatgaaat-----------tttta------------------------------------------------------aaagcata--------------tc------------------taaaaaaaCAAG------------CTTCTGTATGAAC-----AAT-AATGACATCAA-----------Cgtg------------------------aataatttca----------aaaaccttcg--------------AATCGAA--------------------TGCT--------------------------TTAGTGCATT---AAACAgtaaattcaaaagattttttttcaa---------------------------ttaac----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      403870 302 -   783054 GCCGCCCGAAGACATA-GCAAAAACGAGATAG---ATGGCGTTTTA--------------AGGCCTAC-----------TTggataaga---aaaaacagagaaaata--------------ttaGGGAAGGGTTGTG-Aagtagaaaaattgatatcactttgtctttttttttcaacctagaaat-tgtgaaattgaaaacttttgatcgTG---------------------------AATTTCA----------TTGACTTTTGATATGATTATTGGAAATGGAAGGT--GTGAAAAACTATCACtgcttccaaattttttga----------agttagctgatt-gaaaacaaggattccaaaaaacattatGTCAA-------------------AATATGAGTGAACAGAGA-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   45007   0 -   140921 C
e cb4.chrX                42460 168 + 21540570 I

a score=-18492.000000
s ce10.chrX             1167830 83 + 17718866 TTGAACTTTAAAAGAAT----Caataaaattttttttttgaaaattataaaa----aattataaaCTCTCGATGATCTACTCTACTTCAAT---
s caeRem4.Crem_Contig24  296045 56 +  1162296 T--AGCTTGAAGagttt----aaaat--gtttttctcatACACTTTGAGA--------TTTA--------------TTGTGACact--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92040 70 -   141934 ---aaC----AAAACTT----AAATTTAGCTCAATTTCGGAAACTtgtga------ttttctgaaatctt----aTTTTGAGTGctcatgt---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      404172 68 -   783054 ---AAC----AAATTAT----AAAATAAGTTTAGTTCAGTTACCGAGTGa--------ttcaaaatgatc----atttcTCATATTGATTT---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   45007 82 -   140921 --------TTAAATCATGAGAGAATTGACcttattttctcaaaaaaaaaaaacaataattaaaaactttt----cttCTAAATATGTACATAAC
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                42460 168 + 21540570 I

a score=362757.000000
s ce10.chrX             1167913 550 + 17718866  
s cb4.chrX                42628 609 + 21540570  
i cb4.chrX              I 168 C 0
s caeRem4.Crem_Contig24  296101 621 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92110 534 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      404240 541 -   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   45089 584 -   140921  
i caeJap4.Scaffold17966 C 0 C 0

a score=910.000000
s ce10.chrX             1168463 1 + 17718866 T
s cb4.chrX                43237 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  296722 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92644 1 -   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   45673 1 -   140921 T
i caeJap4.Scaffold17966 C 0 I 23
e caePb3.Scfld02_62      404781 0 -   783054 C

a score=180.000000
s ce10.chrX             1168464 1 + 17718866 A
s cb4.chrX                43238 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  296723 1 +  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92645 1 -   141934 A
i caeSp111.Scaffold514  C 0 I 95
e caePb3.Scfld02_62      404781 0 -   783054 C
e caeJap4.Scaffold17966   45674 23 -   140921 I

a score=613.000000
s ce10.chrX             1168465 4 + 17718866 ATTT
s cb4.chrX                43239 4 + 21540570 gtct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  296724 4 +  1162296 GTTT
i caeRem4.Crem_Contig24 C 0 I 20
e caePb3.Scfld02_62      404781 0 -   783054 C
e caeJap4.Scaffold17966   45674 23 -   140921 I
e caeSp111.Scaffold514    92646 95 -   141934 I

a score=364.000000
s ce10.chrX             1168469 4 + 17718866 TTTT
s cb4.chrX                43243 4 + 21540570 tttt
i cb4.chrX              C 0 I 55
e caePb3.Scfld02_62      404781 0 -   783054 C
e caeJap4.Scaffold17966   45674 23 -   140921 I
e caeSp111.Scaffold514    92646 95 -   141934 I
e caeRem4.Crem_Contig24  296728 20 +  1162296 I

a score=0.000000
s ce10.chrX             1168473 657 + 17718866  
e caePb3.Scfld02_62      404781   0 -   783054 C
e caeJap4.Scaffold17966   45674  23 -   140921 I
e cb4.chrX                43247  55 + 21540570 I
e caeSp111.Scaffold514    92646  95 -   141934 I
e caeRem4.Crem_Contig24  296728  20 +  1162296 I

a score=435.000000
s ce10.chrX             1169130 14 + 17718866 TTTTCTTCCGC--------CAG
s caePb3.Scfld02_62      404781 22 -   783054 ttttctttcacagagttgacag
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   45674 23 -   140921 I
e cb4.chrX                43247 55 + 21540570 I
e caeSp111.Scaffold514    92646 95 -   141934 I
e caeRem4.Crem_Contig24  296728 20 +  1162296 I

a score=420.000000
s ce10.chrX             1169144 4 + 17718866 TAAA
s caePb3.Scfld02_62      404803 4 -   783054 aaaa
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   45697 4 -   140921 taga
i caeJap4.Scaffold17966 I 23 C 0
e cb4.chrX                43247 55 + 21540570 I
e caeSp111.Scaffold514    92646 95 -   141934 I
e caeRem4.Crem_Contig24  296728 20 +  1162296 I

a score=-2888.000000
s ce10.chrX             1169148 10 + 17718866 ACTT--AAATT-G
s caeRem4.Crem_Contig24  296748 10 +  1162296 ATCT--AAATAT-
i caeRem4.Crem_Contig24 I 20 C 0
s caeSp111.Scaffold514    92741  9 -   141934 attt--taatt--
i caeSp111.Scaffold514  I 95 C 0
s caePb3.Scfld02_62      404808  9 -   783054 attg--acatt--
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   45701 10 -   140921 atttaaaaat---
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                43247 55 + 21540570 I

a score=103638.000000
s ce10.chrX             1169158 128 + 17718866 TTCAGACCCTTGCTGACTCTGTAGCAAATGAAGGCCGTTTCAACCGAACGAAAACGCGGAAACAAATTCCAGCCAACGAAAGAGTTCATGCAGATGAGTTAGCTGTTGTTTGGCATTATGATGTAAGT
s cb4.chrX                43302 126 + 21540570 TTCAGACTCTCGCCGACTCTGTTGGCAATGAGGGACGGAACAATCGAACCAAAACGCGAAAACAGATCCCAGCAAATGAAAAGGTTCATGCCGACGAGTTAGCCGTTGTTTGGCATTATGATGTAA--
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig24  296758 126 +  1162296 TTCAGACTCTCGCCGACTCTGTTGCTAATGAGGGACGGTACAATCGAACAAAATCACGGAAACAGATTCctttaaatgaaaaagtacATGCGGATGAGCTTGCAGTTGTTTGGCACTATGACGTGa--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92750 128 -   141934 tttagactCTTGCCGATTCTGTTGCTAATGAAGGTCGATATAACCGTACAAAAACTAGAAAGCAGATTCCgacgaatgaaaaaatacacGCCGATGAACTAGCTGTAGTTTGGCACTATGATGTAAGC
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      404817 128 -   783054 tttagACTCTTGCTGATTCAGTAGCAAATGAAGGAAGGTACAACCGTACCAAAACAAGAAAGCAGATCCcaatgaatgagaaaattcATGCGGATGAACTCGCGGTCGTTTGGCATTATGATGTgagc
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   45711 128 -   140921 ttcagactctTGCCGATTCAGTGGCCAACGAAGATAGAATAAATCGCACCAGAACTAGAAAACAACTAccacaaaatgaaaaaatacatGCAGATGAGATCGCGGTTGTGTGGCATTATGATGTATGT
i caeJap4.Scaffold17966 C 0 I 8

a score=-18247.000000
s ce10.chrX             1169286 81 + 17718866 TTTCGGAACTTTTTTTAAAATGTTGAA-------CTATTATATAAAAGTGGTAGCAAACCCATAAGTACTTAAAAAAATTTAATACAA
s cb4.chrX                43428 40 + 21540570 ----TGAG----TTTTAGTA--TTGAAAACGAGTctatt----------------------gtgatttttta----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  296884 47 +  1162296 ----gcaa----atttaaaaatttgaa-------ctctT----------------------CCAACCTCTTCAGA----CCAACAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      404945 28 -   783054 --------------tcatttgttt----------ttttt----------------------ctgtttttttcaa--------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   45847 39 -   140921 ------------tttcataatttt----------ttttt----------------------tttaaagttcaacAATGCTCCA-----
i caeJap4.Scaffold17966 I 8 C 0
e caeSp111.Scaffold514    92878 28 -   141934 I

a score=144261.000000
s ce10.chrX             1169367 162 + 17718866 TTGCTTTTCAGGGATACCTTCGTTACTCACCATTATTTTATGGGTACTACTCCGACGACCCTTTTCTAGGAAACAAGATTAAATATGCTCTACCACTTGCTTATTTCATGGTGACACTTACAATATTCGCTTACAGTTTCTTTGCAATCTTGAGGAAGTAAG
s cb4.chrX                43468 156 + 21540570 ------ttcaGGGATATCTGCGCTATTCGCCATTGTTTTATGGATACTACTCGGACGACCCATTTCtaggaaacaagataaaatATGCACTTCCGCTTGCCTACTTTATGGTCACACTCACAATATTTGCTTACagtttttttgcgattttacggaagtgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  296931 157 +  1162296 -----TTTCAGGGATACTTACGATACTCAGCACTATTTTATGGCTACTACTCGGACGACCCATTTCTAGGAAACAAGATAAAATATGCACTGCCATTGGCGTATTTCATGGTTATGCTGACAATATTTGCTTATAGTTTCTTCGCAATTCTACGAAAGTGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    92906 162 -   141934 ttcattttcagggaTACTTAAGATATTCTGCACTGTTTTATGGCTACTACTCCGACGATCCGTTTCtaggaaataaaataaaatatgcaCTTCCCCTAGCTTATTTTATGGTTACGCTCACAATTTTTGCATATAGCTTTTTTGCAATATTACGAAAGTAGG
i caeSp111.Scaffold514  I 28 I 25
s caePb3.Scfld02_62      404973 162 -   783054 ctgtttttcaggGTTATCTTCGTTACTCAGCATTGTTTTATGGATACTACTCGGATGATCCTTTTCTAGGCAACAAAGTTAAATATGCACTTCCTTTGGCCTATTTTATGGTTACGTTAACAATATTTGCATATAGtttttttGCGATTCTGAGGAAGTAag
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   45886 158 -   140921 ----TTTTCAGGGTTACTTACGATTTTCACCTCTATTCTATGGCTATTATTCCGATGATCCGTTTCTgggctcaaaaataaaatatgcaCTTCCTCTTGCTTATTTCATGGTTACATTGACAATATTTGCGTACAGTTTTTTCGCAATATTAAGAAAGTGGG
i caeJap4.Scaffold17966 C 0 C 0

a score=-6302.000000
s ce10.chrX             1169529 24 + 17718866 -----CATTTTTCTTTTCAGTTTTTCGAG
s cb4.chrX                43624 19 + 21540570 --------ttttttcgCAAG--TTCAcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297088 21 +  1162296 --------TGTAAAAACTAGAATTAATAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      405135  7 -   783054 ----------------------cttacaa
i caePb3.Scfld02_62     C 0 I 17
s caeJap4.Scaffold17966   46044 24 -   140921 TTTCCTTGTTTTCTTTC-----TCCCTAA
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    93068 25 -   141934 I

a score=155044.000000
s ce10.chrX             1169553 178 + 17718866 AAACTAATCGTGCAAAATTCAGAATGGCTGCCAACGCTAGAATGTCAAAGTTATCTGGTAGTAAAGCGGAACAGTATATATTCAATTGGAAATTGTTCACCGGATGGGATTATACCATTGGAAACTCGGAAACTGCTAGTAACACCGTGATGGCTGTAGTGATTAAGCTTAGGGTATG
s cb4.chrX                43643 175 + 21540570 aaactgtt---caaaatcttagaatggCTGCTAATGCAAGAATGTCCAAGTTGTCTGGAAGCAAAGCCGAACAGTACATTTTTAACTGGAAATTGTTCACCGGATGGGATTATACAATTGGAAACTCTGAAACAGCGAGTAACACTGTCATGGCAGTTGTGATAAAACTCAGGGTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297109 174 +  1162296 GTAAAGTT----ATGAGTTCAGAATGGCTGCCAATGCAAGAATGTCAAAGTTATCTGGAAGTAAAGCTGaacaatatattttcaattggaaactGTTTACTGGCTGGGATTACACTATTGGAAACTCGGAAACTGCTAGCAACACTGTTATGGCGGTGGTTATCAAGCTTAGGGTATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    93093 177 -   141934 aaattaatt-ttttaatttcagaatggcAGCTAATGCAAGAATGTCGAAACTGTCTGGAAGTAAAGCTGAACAATATATCTTTAACTGGAAATTGTTCACTGGATGGGATTATACGATTGGTAATTCAGAAACTGCAAGTAATACTGTGATGGCGGTAGTTATCAAGCtcagagtgag
i caeSp111.Scaffold514  I 25 C 0
s caePb3.Scfld02_62      405159 175 -   783054 aaactgttt-tttt--tttcagaatggcttCTAATGCGAGAATGTCAAAACTATCAGGAAGTAAAGCGGAACAATACATTTTCAACTGGAAGCTGTTCACTGGATGGGATTACACTATCGGAAACTCTGAAACTGCTAGTAATACAGTTATGGCTGTGGTTATCAAATTAAGGGTGAG
i caePb3.Scfld02_62     I 17 C 0
s caeJap4.Scaffold17966   46068 169 -   140921 -AAATAAT--------CTTCAGAATGGCTGCAAATGCGAGAATGTCAAAATTATCCGGAAGCAAAGCGGAGCAATACATTTTTAACTGGAAGCTGTTCACTGGATGGGATTACACTATCGGAAACTCGGAAACTGCAAGCAATACAGTTATGGCTGTGGTCATAAAGCTTAGagtttg
i caeJap4.Scaffold17966 C 0 C 0

a score=-10587.000000
s ce10.chrX             1169731 58 + 17718866 GCTATCAACTAAAAATTGTAGATTTGCCAAAATAAAATTTTGGAGTATTTTTATGTTA
s cb4.chrX                43818 16 + 21540570 ---Atca---------------------------------------attttcgttttg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    93270  3 -   141934 ------------------------------------------------ttt-------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      405334  7 -   783054 ------------------------------------------------TTTCTCA---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   46237  5 -   140921 ------------------------------------------------tttca-----
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  297283  0 +  1162296 C

a score=-1510.000000
s ce10.chrX             1169789 48 + 17718866 CCGTAAAATCAGAGTAGCTGAAAAAATTGAAAACAATTACTAAATAAA
s caePb3.Scfld02_62      405341 17 -   783054 ---------------AGCTAGAAAAA--GGAAAC--------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   46242 28 -   140921 --------------------aaaaaacacaACATAATTAATTAATGAA
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                43834  0 + 21540570 C
e caeSp111.Scaffold514    93273  0 -   141934 C
e caeRem4.Crem_Contig24  297283  0 +  1162296 C

a score=-5085.000000
s ce10.chrX             1169837 79 + 17718866 CTATTGAGGCTAAAACATGAAGTTTACTGGTAAAAATAAAAATGCACTGACAAATCCGTAAAAAGCACTGACCCAAGAT
s caeSp111.Scaffold514    93273  2 -   141934 -----------------------------------------------------------------------------tt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      405358 24 -   783054 ---------------CGAGAAGTTCCTgggt----------------------------------------ttcatgtt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   46270  0 -   140921 C
e cb4.chrX                43834  0 + 21540570 C
e caeRem4.Crem_Contig24  297283  0 +  1162296 C

a score=1092.000000
s ce10.chrX             1169916 2 + 17718866 TT
s cb4.chrX                43834 2 + 21540570 tt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    93275 2 -   141934 tt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      405382 2 -   783054 tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   46270 0 -   140921 C
e caeRem4.Crem_Contig24  297283 0 +  1162296 C

a score=-19152.000000
s ce10.chrX             1169918 91 + 17718866 CTTTGCACTGACAAAAATGTCAAATTCACTGACCAATAGTTTGAACGATTTTTACAACA--A-----------AAAAAATGTTGGACCTTAATAATTTTTCTTT
s cb4.chrX                43836 15 + 21540570 ---------------------------------------------------cTTCACGT--C-----------AATAAA-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297283 46 +  1162296 -------------------------------------------------TTCTATACGT--ACCGAAGTGTTGAATGTa-------acgtgattttttctattt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    93277 27 -   141934 -----------------------------------------------ttcttgataaat--A-----------AATAA-------------CTTCGTGTT----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      405384 36 -   783054 -----------------------------------------------ttttttctaagtcGA-----------AATGAC----------cgcttcatatttttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   46270  0 -   140921 C

a score=278169.000000
s ce10.chrX             1170009 351 + 17718866 TTTTAGGAATCAATTGCCGATATCAAAAAAGATGCACATGGAAAATTTCGACTACTGCAATTCTCTTTAAGGTGAATTTCCATCTTTTCTGTAAATATTCCATCTAATAAAAAATA----TTCCAGAGTATTCGCAAACATCATAATTTGTGCGATGCTTGGCTTCTCAATCTACTGCATCATATTCGCAGTGCAAAAATCCCAAGTGCAAGACGACGGAAATCTATTCACAAAAAATCAAGTTCCATCTGTCGTCTCGACAATTACACACGTCTTTCCCATGATTTTCGATTTGATCGGAAAAATGGAAAATTATCATCCGAGAACCGCGTTGAGAGCTCATTTGGGCAGGTA--------T
s cb4.chrX                43851 349 + 21540570 TTTCAGGAGTCCATTGCTGACATCAAAAAAGACTCCCATGGTAAATTTCGACTTCTTCAATTTACACTAAGgtaggaaaaaataaattaacgaaattcccaattt-----aaaaca-tttttaaagagTTTTTGCAAACGTTGTAATATGTGCTATGCTTGGATTCTCAATTTATTGCATCATATTCGCCGTTCAAAAGTCGCAAGTGCAGGATGATGGGAActtatttacaaaaaatcaagttccATCTGTTGTCTCGACAATTACGCACGTGTTTCCcatgatttttgatttgattggGCGAATGGAAAACTATCATCCAAGAACTGCGCTGCGAGCACATCTGGGAAGGTA--------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297329 341 +  1162296 ttctaggAATCAATTGCGGATATCAAAAAGGACTCTCATGGAAAATTCCGGCTTCTCCAGTTTACGCTGAGGT----ACCCACCAATCCTCCTAACCCCCAA--------AATGTC-TTATTTCAGAGTGTTCGCGAACATTGTGATTTGTGCGATGCTTGGTTTTTCAATCTATTGCATTATATTCGCTGTGCAAAAATCGCAAGTTCAAGATGATGGGAAtctattcacaaaaaatcaagttcCATCTGTTGTCTCGACAATTACACACGTGTTTCCCATGATTTTCGATTTGATTGGCAGAATGGAGAACTATCATCCGCGGACCGCATTGAGAGCACATTTGGGAAGGT---------T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    93304 338 -   141934 ---AAGGAATCAATTGCGGACATTAAGAAAGATTCTCACGGTAAATTTCGTTTGCTACAATTTACTCTGAGGTATT-TTATACTacccttttttatttcacc--------AAATTA----TTTCAGAGTGTTTGCGAACATTGTAATTTGTGCCATGCTTGGCTTCTCAATCTATTGCATTATTTTTGCGGTACAAAAATCGCAAGTTCAAGATGATGGGAACCTATTTACGAAAAATCAAGTTCCATCTGTTGTCTCAACAATTACACACGTTTTTCCCATGATATTCGATTTGATTGGCAGAATGGAAAACTATCACCCGAGAACAGCGCTAAGAGCACATCTGGGAAGGT---------T
i caeSp111.Scaffold514  C 0 I 23
s caePb3.Scfld02_62      405420 352 -   783054 ttccaggAATCAATTGCTGACATCAAAAAAGATTCACACGGAAAATTTCGTTTGCTGCAATTTACTTTGAGGTA---TCATAACAATGCTTGAAAGTCCcct--------gaatcaattttttcagggttttcgCAAACATTGTAATTTGTGCGATGCTTGGTTTTTCAATATACTGCATCATTTTCGCTGTGCAAAAATCTCAAGTTCAAGATGATGGAAATCTTTTTACGAAGAATCAAGTTCCATCTGTTGTCTCGACGATTACACACGTGTTTCccatgatttttgatttgattggTCGAATGGAGAACTATCATCCGAGAACTGCACTAAGAGCGCACTTGGGAAGGTAGACAAACCT
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   46270 346 -   140921 TTTAAGGAATCCATCGCAGATTGCAAGAAAGATTCGCACGGGAAATTTCGATTACTTCAGTTCACTTTAAGGTAC--TTAAATAAATGAGAAAATTATTTAATCAG----AAACCA---TCTCCAGGGTGTTTGCTAATGTGGTCATTTGCGCAATGTTGGGATTTTCCATTTATTGCATTATATTTGCCGTCCAAAAGTCACAAGTACAGGATGATGgaaatttatttacaaaaaaccaAGTTCCCTCGGTTGTTTCAACTATCACACACGTCTTTCCAAtgatttttgatttgattGGAAGAATGGAAAACTATCATCCTCGGACAGCATTACGTGCGCATTTAGGAAGGTA--------C
i caeJap4.Scaffold17966 C 0 C 0

a score=-9618.000000
s ce10.chrX             1170360 29 + 17718866 -GAAGCTGATATATAA-AAATTTTTGAGTGT
s cb4.chrX                44200 26 + 21540570 -GAATTGGA---ACAAGAAACaatttatta-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297670 25 +  1162296 -GGATATTA---ATAA-AGATGATTGATAG-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      405773 19 -   783054 ------GAA---ATTCGATACATTGCAT---
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   46616 19 -   140921 TGTAGtaaa---ttca-aaactt--------
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    93642 23 -   141934 I

a score=83117.000000
s ce10.chrX             1170389 206 + 17718866 TAAAAAATTATAAATTTCAGAGTCCTAATTTTGTATACTGTAAACTACATCACTTTGATATTTGCATTGTTCGAAAAAATGACCGCACTTCGAGATCGTGTCAATTCAACTTCCACATCGTCTAGTCACAGAACGAAAAGACAGCAGGGTGGATGGAATCCGGTAAGTATTTTGGGAG-TGTG----------------------TGGG------GGAGGGGTTCCG----------------------TTAAAAAT
s cb4.chrX                44226 174 + 21540570 taaaaaat---gCGTTACAGAGTTTTGATCCTTTATACTGTCAACTACATTACTCTCATTTTTGctctgtttgaaaaaatgacagcTCTACGAGACCGTGTGAACTCAACGTCA---ACTGTTAAACATCATGTTAAACGACAGCAAGGAGGTTGGAATCCGGTaagtttttttgt-----------------------------------------------------------------------------attg
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24  297695 176 +  1162296 TGGGAAATTA-TCATTTCAGAGTCTTGATTTTGTACACCGTCAATTACATTACACTGATTTTTGCGTTGTTCGAGAAAATGACAGCACTCAGGGAACGAGTGAACTCTACATCT---ACCACAGGCCATAGAAACAAACGACAACAAGGCGGATGGAATCCGGTGAGTacatataa-----------------------------------------------------------------------------aaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    93665 180 -   141934 taaaatatt--aaattttaGAGTGTTAATTCTGTATACCGTCAATTATATAACTCTGATTTTTgctttgtttgaaaaaatgactgCTCTTCGAGAACGCGTTAATTCGACCTCCTCGTCTACTAGTCACCGTACTAAGCGTCAACAAGGAGGATGGAACCcggttcgtttttttcact---------------------------------------------------------------------------aaat
i caeSp111.Scaffold514  I 23 C 0
s caePb3.Scfld02_62      405792 187 -   783054 Tgagacttt----ttttcagagttttgattttgtatACAGTCAATTACATCACCCTCATATTTGCtttgtttgagaaaatgacAGCTCTCCGAGAGCGTGTTAATGTAACGTCT---ACTATCAATCATAGAGAAAAACGCCAACAAGGAGGATGGAATCCGGTAAGTTCAAGTGACG--------------------------------------GAAGGAATC-------------------------TAAAAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   46635 254 -   140921 tgagaaacCTTGATTTTCAGAGTTCTTATTTTATACACTGTTAATTATATCactttaatttttgcattgttcgaaaaaatgacAGCTCTGCGGGAACGTGTGAACCACTCGGCTGAGCCGATGAG---TAGAGAAAAACGACAGCAAGGTGGATGGAACCCGGTAAGGATTCTTAAATTTGTGGTTCTACCAACAAAATAAATTCCGAGAAGATTGGAAGAATTTTGAACGGCGCTCTGTAGCAATCACGTAAAAAT
i caeJap4.Scaffold17966 C 0 C 0

a score=-44889.000000
s ce10.chrX             1170595 131 + 17718866 --------------TGTAAAA-----AAACCGAG---GAAAT--GCAAACTAGGATACGCTAA-----ACACTAACCCAGTCAATAAACACTAGG-----------------------GCTTCCATGAGgt-------------------cgccgcacgccacgctactcgtttcacgccaagctg--------tggaacacccgaactt
s cb4.chrX                44406  54 + 21540570 --------------------------------------------ACAAATGATTACACTTTAA--------------TAATCGAAAAACACT------------------------------------------------------------------------------------------GTTT--------TGGTATACTTCAATTT
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold514    93845  10 -   141934 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tTATATTCA------T
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      405979  14 -   783054 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATATACA--ACTTT
i caePb3.Scfld02_62     C 0 I 4
s caeJap4.Scaffold17966   46889 202 -   140921 TTGTCTGCCGGGGCCATAAAATTATCAAACCGAGAGCGCAATCAGCGAGAGAGGGAGGGCGAGCGTTGATCTctagaaaatcgaaaaaaacgtgacaACGCGCAATTACGAATTTTCTGAGTCTATAATGTACAACAgtttttcacggcgtgctgaccggaacgttattggcaacgcgctccgctgagggtGAATGTTGctt--------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  297871   0 +  1162296 C

a score=-2833.000000
s ce10.chrX             1170726 18 + 17718866 -----------gtcggc------cgcttccaaata
s caeSp111.Scaffold514    93858  8 -   141934 ---------------------------TGTAAACA
i caeSp111.Scaffold514  I 3 C 0
s caePb3.Scfld02_62      405997  9 -   783054 --------------------------ttggaaata
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold17966   47091 35 -   140921 gtctgcgcctcttcggcgagagtcgctACAAAACA
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                44460  0 + 21540570 C
e caeRem4.Crem_Contig24  297871  0 +  1162296 C

a score=-2513.000000
s ce10.chrX             1170744 22 + 17718866 actacttttcacacacaacgac
s caeRem4.Crem_Contig24  297871 16 +  1162296 attttctttgatACAC------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      406006  3 -   783054 att-------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   47126 22 -   140921 AATTATCCTCatactctgcttc
i caeJap4.Scaffold17966 C 0 I 166
e cb4.chrX                44460  0 + 21540570 C
e caeSp111.Scaffold514    93866  0 -   141934 C

a score=-1673.000000
s ce10.chrX             1170766 65 + 17718866 aacgtccagccggcgtgaggcccgcatctcgcgcctcactcagctggatgccctaCAATAAACTA
s caeRem4.Crem_Contig24  297887  8 +  1162296 ---------------------------------------------TGATACCC------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      406009  0 -   783054 C
e caeJap4.Scaffold17966   47148 166 -   140921 I
e cb4.chrX                44460  0 + 21540570 C
e caeSp111.Scaffold514    93866  0 -   141934 C

a score=-18848.000000
s ce10.chrX             1170831 87 + 17718866 TACCTGAGGTGTCTAGTAATTTTCTTACCGACACTCTAGGTTGCCTAATTCCAGTTAGCTTAAAATCTGAAAAAGCTAACCCAAA---------------------------AA
s cb4.chrX                44460  8 + 21540570 ---------TATGTG-------------------------------------------------------------------------------------------------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  297895 35 +  1162296 ---ATTTGGTATTTGGgtac-------------------------------------------------aaaaaactaattataa---------------------------at
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    93866 19 -   141934 ---------TGTCTA--------------------------------------------------------AAAACTCATct------------------------------tg
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      406009 49 -   783054 ---------tttttg--------------------------------------------------------atatcacatttcaattttcactgctCTTCATCAGTTTCTGCTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   47148 166 -   140921 I

a score=233803.000000
s ce10.chrX             1170918 358 + 17718866 TTCCAGAATATGCAACGACCACCGCCATATGCTAGCCGAGCAGAAGTCCGCCAAATGAGTGATTTTCTAGCTGCGAACACCAGAAGGTTCCAAACTGTTAGCCAACGTACAACTCGTTCAGTGACTACACCTTTCACTGTGGGTTA-------TCACAATTTCTATTCAGC------------CTTTTT----ATTTATCATTTCTG-------CAGGTTGCACCTCAATTTGGCCCATTTAATGTGAACAATCCCAATGCAGTATTTCACAACGGAACTCATTCTACCAGTTTTGAATCGCAGATTCTTGGACCTAAAGCGTTACCGATATTCACACCACCACCGCGGAAATATCCAGGATTTACGCCGGGAAATGTTGGACAGGTA
s cb4.chrX                44468 362 + 21540570 GTTTAGAATATTCAACGGCCGCCGCCTTATGCCAGTCGTGCTGAAATTCGCCAAATGAGCGAGTTTTTAGCTGCAAACACCCGCAGATTTCAAACAGTCAGCCAACGAACTACAAGATCGGTCACAACTCCATTCACAGTAAGACCTTCATGAAGTGTATGTGCATTTTGTC---------TAATTTCC----AATAATTA-------------CAGGTTGCTCCTCAATATGGCCCATTCAATGTTAACAATCCAAACGCAGTATTCCACAATGGAACTCATTCAACCAGTTTTGAATCACAAGTTCTTGGCCCCAAAGTGCTTCCGATATTTACACCTCCACCAAGGAAGTATCAAAATTATAGTCCGGGAAAGGTGGGACAGGTA
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig24  297930 364 +  1162296 ttctagaatattcAACGGCCACCACCATACGCCAGCCGCGCCGAAGTCCGCCAAATGAGTGAATTCCTTGCCGCTAACACCCGCAGATTCCAAACTGTCAGCCAGAGAACCACCCGTTCTGTAACTACTCCATTTACAGTATGTTC-----------CATGCTCATTTGGCT---------Aactttct----tattcttattaTCTTGTTTTCCAGGTTGCTCCTCAATTTGGACCGTTCAATGTGAACAATCCCAACGCTGTTTTTCACAATGGAACCCACTCGACTAGTTTTGAGTCTCAAGTTCTCGGACCCAAAGTATTACCCATCTTTACTCCACCACCGAGAAAGTATCAAAACTATAGTCCAGGAAATGTAGGACAGGTA
i caeRem4.Crem_Contig24 C 0 I 49
s caeSp111.Scaffold514    93885 352 -   141934 tttcagaatatccAACGACCTCCCCCATATGCTAGTCGAGCCGAAGTTCGACAAATGAGTCAATTTCTTGCAGCAAACACTCGCAGGTTTCAGACTATCACACAAAGAACTACGCGATCTGTTACCACTCCTTTCACGGT------------------ATTTTCAtgtcg-------------ctttga----aaattgtattCCGTTAAGCT-CAGGTCGCTCCTCAATATGGACCTTTCAACGTGAACAATCCTAATGCTGTTGTTCACAATGGAACTCATTCAACAAGTTTTGAATCTCAAATTTTAGGACCCAAGGTGTTACCGATTTTTACACCACCGCctagaaaatatcaaaattttagTCCTGGAAATGTAGGACCggta
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      406058 371 -   783054 TTCCAGAACATCCAACGTCCTCCACCATATGCAAGTCGAGCTGAAGTCCGTCAAATGAGCGAGTTCTTAGCTGCCAACACCCGCCGGTTCCAAACAGTCAGTCCAAGAACAACTCGTTCCGTAACCACACCATTCACTGTtagttt-------tgtcaattttcatttcaat---------atcTTTCAAGAcagattgaattttcaaagttt-taggTTGCTCCTCAATACGGCCCATTCAATGTGAACAACCCGAACGCTGTTTTTCATAATGGAACTCATTCTACTAGCTTTGAATCTCAATTGTTAGGCCCAAAAGTGTTGCCAATCTTTACACCACCTCCAAGGAAGTTCCCGGGTTATAGTCCAGGGAATGTGGGACAGGTA
i caePb3.Scfld02_62     C 0 I 28
s caeJap4.Scaffold17966   47314 368 -   140921 tttcagaattttcaaagaCCTCCACCGTTCGCAAGTAGATCAGAAATACGGCAAATGAGTGATTTCATAGCTGAAAACTCTCGACGCTTTCAAACCGTAACCCAACGAACAACAAGATCGATTGCCACTCCATTCAcagtatgtac--------atacatatacatgtatttataattttaaactttta----aataattaattcC--------AAGGTTGCGCCACAATATGGACCATTTAATGTCAACAATCCAAATGCGATTCTTCACAATGGCTCACACTCTACCAGTTTTGAATCCCAGCTTCTTGGCCCAAAGGTTCTACCAATTTTTACACCACCTCCACGAAAATATCCAAATCGTTATTCTAATGGTGTTGACCAGGtg
i caeJap4.Scaffold17966 I 166 C 0

a score=409.000000
s ce10.chrX             1171276 3 + 17718866 CAA
s caeSp111.Scaffold514    94237 3 -   141934 aaa
i caeSp111.Scaffold514  C 0 I 36
s caeJap4.Scaffold17966   47682 3 -   140921 aaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      406429 28 -   783054 I
e cb4.chrX                44830 31 + 21540570 I
e caeRem4.Crem_Contig24  298294 49 +  1162296 I

a score=43.000000
s ce10.chrX             1171279 5 + 17718866 GTTTG
s caeJap4.Scaffold17966   47685 5 -   140921 cgttg
i caeJap4.Scaffold17966 C 0 I 17
e caePb3.Scfld02_62      406429 28 -   783054 I
e cb4.chrX                44830 31 + 21540570 I
e caeSp111.Scaffold514    94240 36 -   141934 I
e caeRem4.Crem_Contig24  298294 49 +  1162296 I

a score=0.000000
s ce10.chrX             1171284 489 + 17718866 TTTGAAATTTTGCACACTACATCTTTTTGTAAACGTGTCACATTATATAGAATTCAAATAAACAGGAAACTTCCTGATTAGTTATTTAGCTGGGGTTCTGTTAAACTTGTAAATGCTCGGATTGATTTTTCAGCTCTGAAAAATTTGTCGTttgttttaaaacgtgctcatgacaccacaatgactaaatatcgtagtaaaaactttttttttaagtttcaaagttttatatgattctgttgaaaatttgaaaattctcTGTTTTTGCCACTTTTTTGGAAGTCTTCAATCAAAAAAACATTTCTTTGAGTCTACTTAAATTTGAAAAATCAATAAAAAGTAAAAATTCAAACATGCGACAGTGCTATAGTTTTGtcaaaaagtggcaaaaactcagtaattgccactttttggccgttaataaaaaaatttcaatttttttttgaaaTTAGTAGTTTTCAACAATTTCCTCACTCGCGGTATTCCAAA
e caePb3.Scfld02_62      406429  28 -   783054 I
e caeJap4.Scaffold17966   47690  17 -   140921 I
e cb4.chrX                44830  31 + 21540570 I
e caeSp111.Scaffold514    94240  36 -   141934 I
e caeRem4.Crem_Contig24  298294  49 +  1162296 I

a score=606.000000
s ce10.chrX             1171773 16 + 17718866 TACTCTACCATCAATC
s caeJap4.Scaffold17966   47707 16 -   140921 taatttttcatcAAAC
i caeJap4.Scaffold17966 I 17 C 0
e caePb3.Scfld02_62      406429 28 -   783054 I
e cb4.chrX                44830 31 + 21540570 I
e caeSp111.Scaffold514    94240 36 -   141934 I
e caeRem4.Crem_Contig24  298294 49 +  1162296 I

a score=1215.000000
s ce10.chrX             1171789 6 + 17718866 AACAAT
s caePb3.Scfld02_62      406457 6 -   783054 AACAAT
i caePb3.Scfld02_62     I 28 I 1
s caeJap4.Scaffold17966   47723 6 -   140921 AAGAAT
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                44830 31 + 21540570 I
e caeSp111.Scaffold514    94240 36 -   141934 I
e caeRem4.Crem_Contig24  298294 49 +  1162296 I

a score=-1632.000000
s ce10.chrX             1171795 5 + 17718866 ATTTC
s cb4.chrX                44861 5 + 21540570 aTTTC
i cb4.chrX              I 31 I 4
s caePb3.Scfld02_62      406464 4 -   783054 ATAA-
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   47729 2 -   140921 -TT--
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514    94240 36 -   141934 I
e caeRem4.Crem_Contig24  298294 49 +  1162296 I

a score=88672.000000
s ce10.chrX             1171800 125 + 17718866 TTACAGCAATTCGGAGGCCCTGACTTTCCTAGAAACCAAGTATACACAAAATCGACTCCATTGCCACGTGTTCGAACAAAACCACCTTGGGTATACACGACGACGCATCCACCGTTAGTTCAGAA
s cb4.chrX                44870 125 + 21540570 TTTCAGCAATTTGGAGGTcccgattttccaaaacacCAAACATATTCCAAGTCAACTCCTTTACCACGAGTCCGAACCAAACCACCATGGATGTTTACAACTACCATCATTCCAACAGTTCAAAA
i cb4.chrX              I 4 I 209
s caeRem4.Crem_Contig24  298343 125 +  1162296 TTCCAGCAGTTCGGAGGCCCtgactttccaaaaaatcaagtcTACACCAAATCCACTCCACTCCCACGGGTTCGGACCAAACCACCATGGGTTTATACGACAACTCACCCACCATTGGTACAAAA
i caeRem4.Crem_Contig24 I 49 C 0
s caeSp111.Scaffold514    94276 125 -   141934 tttcagcaATATGGGGGTCCTGACTTTCCCAAAAATCAGGTTTATACCAAATCTACTCCTCTCCCACGAGTCAGGACAAAACCGCCTTGGGTTTATACTACAACACACCCACCACTCATACAAAA
i caeSp111.Scaffold514  I 36 C 0
s caePb3.Scfld02_62      406468 125 -   783054 TTCCAGCAATTCGGAGGTCCTGATTTCCCAAAGAATCAAGTTTACACAAAATCTACACCCTTACCACGTGTGAGGACAAAACCACCTTGGGTGTATACCACCACTCATCCTCCATTGCTGCAAAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   47731 122 -   140921 ---CAGCAATTTGGCGGACCAGATTTTGCAAAGAGTGCAACTTACTTGAAATCTACCCCGCTTCCACGTGTCAGAACGAAACCACCTTGGAGCTACACAACGACTGTTCCACCCAAAATCCAAAC
i caeJap4.Scaffold17966 C 0 C 0

a score=2642.000000
s ce10.chrX             1171925 8 + 17718866 TCGTGCAA
s caeRem4.Crem_Contig24  298468 8 +  1162296 CCGACCGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    94401 8 -   141934 TCGTTCGA
i caeSp111.Scaffold514  C 0 I 116
s caePb3.Scfld02_62      406593 8 -   783054 ACGACCGA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   47853 8 -   140921 ACGTCCGA
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                44995 209 + 21540570 I

a score=-2291.000000
s ce10.chrX             1171933 75 + 17718866 TGACTACAACAATGAGCAAA---TCAGCGAAGAAAGGGAACTCAAAAAATTTAGATGATGATATATTGCTTTCGAACG
s caeRem4.Crem_Contig24  298476 78 +  1162296 ACAGTTCAAAAACAACTAAAGGTTCATCGAAAACTGGAGAATTTGGAGAATTGGGAGATCCTGCGACATTATCGAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      406601 78 -   783054 CAAGTTTGATAGGGaattcatcatcttcaaaaatgggTGATCTGAGTAAACTGGGAGAAGAAGCATTGCTTTCAAATG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   47861 51 -   140921 ------------------------GCGCCAGAACACCAGTTTTGACAGAT---GCAGTTGATATTTTGATTTCAAGAG
i caeJap4.Scaffold17966 C 0 I 32
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I

a score=846.000000
s ce10.chrX             1172008 3 + 17718866 GTA
s caeRem4.Crem_Contig24  298554 3 +  1162296 GTA
i caeRem4.Crem_Contig24 C 0 I 35
s caePb3.Scfld02_62      406679 3 -   783054 GTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   47912 32 -   140921 I
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I

a score=-477.000000
s ce10.chrX             1172011 29 + 17718866 AGTGGTAGAGTTAGAGGGGAGCTGTGAAT
s caePb3.Scfld02_62      406682 17 -   783054 AGCA-CAGACCTTGAGGG-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   47912 32 -   140921 I
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557 35 +  1162296 I

a score=-6411.000000
s ce10.chrX             1172040  91 + 17718866 TTGCTAAAAGA-TAACACTTTGAAGTTAAGTTTAGTGGCTTTATTTTTTTTTTAATCTCTCTTTTGCTATTTTTCCtatg-gcttccatgcag-----------
s caePb3.Scfld02_62      406699   6 -   783054 ---------------------------------------------------------------------------------------ATGTAG-----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   47944 101 -   140921 TTATTAAACGGTTAGTATTTAAAGACTCGATATAGCGg---tatttttctctgtgtctcttccgCTCTCTTCTATCtctgcgagaccacatggccgcggccaag
i caeJap4.Scaffold17966 I 32 C 0
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557  35 +  1162296 I

a score=-951.000000
s ce10.chrX             1172131  70 + 17718866 gcgcaa------------aaacacct------------gccacgccgttctggcggcgacctc---------------cgccttcctcgcgccgcaagcctcgcctctt
s caeJap4.Scaffold17966   48045 104 -   140921 gaacagcgcgtggccgacGGACAGCTTGATGCAAATGCGCTGCActgtt-tgtctgcgtctcttcagcaaAAACACAACAATTTCTGCGCACTGC--GCCTC--CTCTT
i caeJap4.Scaffold17966 C 0 I 27
e caePb3.Scfld02_62      406705   0 -   783054 C
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557  35 +  1162296 I

a score=0.000000
s ce10.chrX             1172201 35 + 17718866 gtatagtgcggtgcaaaattcgcaaagtgtcgggt
e caePb3.Scfld02_62      406705  0 -   783054 C
e caeJap4.Scaffold17966   48149 27 -   140921 I
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557 35 +  1162296 I

a score=383.000000
s ce10.chrX             1172236 12 + 17718866 tggaggcaggcg
s caePb3.Scfld02_62      406705  9 -   783054 TGGAGGCAG---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   48149 27 -   140921 I
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557 35 +  1162296 I

a score=-7406.000000
s ce10.chrX             1172248 112 + 17718866 tcaggccttgaaacct------------cgcctgcctcgcatgg----aggccTAATTTTATCTTATTTTAAACTCAATAGAACACTAAACTGTGCACAACATTTTCCCTCACCTGAACAGAAAGAAG
s caePb3.Scfld02_62      406714  40 -   783054 -----------------------------------------------------TGTTTTTAA-------TAAAATCAGTCGATC-----------CAcaacg-----------------aaaaataat
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   48176  87 -   140921 TTATGCCATGCAGCCTacagtagaaaaatgcgaaccccgcgcagtttaaattgtatttctca--------acgttccgtccaa------------cacaccAttttt---------------------
i caeJap4.Scaffold17966 I 27 C 0
e cb4.chrX                44995 209 + 21540570 I
e caeSp111.Scaffold514    94409 116 -   141934 I
e caeRem4.Crem_Contig24  298557  35 +  1162296 I

a score=625102.000000
s ce10.chrX             1172360 916 + 17718866  
s cb4.chrX                45204 936 + 21540570  
i cb4.chrX              I 209 C 0
s caeRem4.Crem_Contig24  298592 868 +  1162296  
i caeRem4.Crem_Contig24 I 35 C 0
s caeSp111.Scaffold514    94525 884 -   141934  
i caeSp111.Scaffold514  I 116 C 0
s caePb3.Scfld02_62      406755 928 -   783054  
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   48263 882 -   140921  
i caeJap4.Scaffold17966 C 0 I 27

a score=-6349.000000
s ce10.chrX             1173276 39 + 17718866 TAAAACATGCAGAAAATTGCGTGCATATAAGCACAGTAA
s cb4.chrX                46140 27 + 21540570 -----------GATcattgaattc-tttttttatcgGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    95409 22 -   141934 -----------Tgaaaagtcat------agaaactgaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      407683 25 -   783054 -------------ggattttattt-ttgagcaaCTATTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   49145 27 -   140921 I
e caeRem4.Crem_Contig24  299460  0 +  1162296 C

a score=108320.000000
s ce10.chrX             1173315 197 + 17718866 TTTTAGAGAAAAACAACGATAAAGGTTCAATTAATTTCAGGAACGAACTGAAGAGAAGAAGAAAATCTTCGAATTGGCTGGTGGAAAGAAAAATAAGTTTGAAAAAGATCGAGATAAGAAACGATCAAACGACTATATTCCACTGATTGAACAGCGACGACGTGAGCCATGGAGGCAGTACCATGAGGT------------------------------------------------------------------AAGAAATT
s cb4.chrX                46167 159 + 21540570 AATG------------------------------TTTTAGGAGAGgacagaagagaagaagaaaatctttgAGTTGGCTGGTGGTaagaaaaacaagtttgaGAAGGATAGAGACAAGAAACGATCCAACGACTACATTCCTCTGATTGAACAACGACGACGTGAGCCATGGAGGCAATATCATGAAGT--------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  299460 228 +  1162296 -----------------------------------TTCATGAAAGaactgaagagaagaaaaagatctTCGAGTTGGCTGGTGGCAAGAAGAACAAGTATGAGAAGGATCGGGACAAAAAACGGTGTAATGACTACATCCCACTGATTGAGCAGAGAAGACGAGAACCATGGAGACAGTATCAtgaagttagttttttttaatgtgacTTTTGTATGAGATAAACGAAAAAGTAATATTTTAGTAAGGATATGTTTAGAAATT
i caeRem4.Crem_Contig24 C 0 I 105
s caeSp111.Scaffold514    95431 160 -   141934 aattaa--------------------------atttttaggaaagaacagaagaaaaaaagaaaatctttGAATTGGCCGGAGGTAAAAAGAACAAGTTTGACAAAGATAGAgataagaagaaatcaaatgacTACATTCCTCTTATTGAGCAACGGAGAAGAGAGCCATGGAGACAATATCACGA-----------------------------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      407708 167 -   783054 TTTGAG--------------------------CACTTTAGgaaagaacagaagaaaagaagaaaattttcgagctAGCTGGTGGTAAGAAGAACAAGTTTGATAAAGATCGAGATAAGAAACGATCTAACGACTACATCCCACTAATTGAGCAACGAAGACGAGAGCCATGGAGACAATATCACGAGGT-------------------------------------------------------------------Agaa---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   49172 188 -   140921 ----------------ttttaaataatactATTTATTCAGGAGCGTAccgaagaaaagaaaaagattttcgagctcgctggaggaaaaaagaacaaattcgagaaagacaacaaaagAAAGATAACTAATGAGCACGTTCCATTAATTGAACAAAGAAGGAGAGAGCCATGGAGGCAATATCATGaggt-------------------------------------------------------atgtacatatttata----
i caeJap4.Scaffold17966 I 27 C 0

a score=79558.000000
s ce10.chrX             1173512 229 + 17718866 GGCATGACACTTTCCTAAAC---------------TCTTTCAGTAAAAAGTATAC---------------CATTACAACATTCAA--------TAGAATTGTTACAGATGGAAGCGGATCACGCTTTGGCATCAGATTCATCTGAAGAAAGTGACATCAACGAGGATGAAGACGACGAACGCCAACCGCTGACTGCATATCCATTAAGAGCAATTGAAACACCACCAGAGACACTTCAAGTCACTGCGTTCCATCCATCACTAGGGT
s cb4.chrX                46326 208 + 21540570 -ATACTTTACCTACATAGA----------------TGCATATGCAACAAAAGCTT------------------------------------------AATTTTCCAGCAGGAAGCTGACAACGGCTTAGCATCGGATTCCTCCGAAGAGAGTGACATTGgcgaggaagaagaggaggaacgACAGCCAATCGCAGCTTATGCATTACGTTCTTCTGAAACTCCTCCAGAAACTCTTCAAGTCACCGCTTTCCATCCTTCTCTAGGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  299793 253 +  1162296 AGtactacactgaccaaaactATCTTACTCTTGAGTTCGGGTATAACAAGAATCCTATGTTTCTATATTTCAccacaacatc--------------aaaatttccagatggaaGCTGAAAACGCGTTGGCATCTGACTCATCCGAAGAGAGTGACATGGGCGAGGAGGATGATGACGATAGACAACCGATAACAGCATACCCATTGAGATCAGTGGAGACCCCACCGGAAACACTCCAAGTCACTGCATTCCATCCATCTCTGGGGT
i caeRem4.Crem_Contig24 I 105 C 0
s caeSp111.Scaffold514    95591 158 -   141934 -------------------------------------------------------------------------------------------------------------AGAAGCAGATAACGGTTTAGCATCAGATTCATCCGAAGAAAGTGATCtaggagaagatgaagaagatgagcgTCAACCGTTGGCCGCCTACCCATTAAAGTCAATTGAAACTCCACCTGAAACCCTCCAAGTCACTGCATTCCATCCTTCCTTAGGGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      407875 212 -   783054 ------------------------ccacttttt--tgttgatgccacaaaaatat---------------tgaaacaaaaaa--------------aatatgttcagaTGGAAGCAGAAAATGTGTTAGCATCGGATTCATCTGAAGAAAGTGATATGggagaggatgaagaagacgagCGTCAACCAATTGCTGCATACCCATTGAGATCAGTTGAAACCCCGCCTGAAACTCTTCAAGTCACAGCATTCCATCCATCTTTAGGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   49360 196 -   140921 -----------------------------------------------------------------------tCCATAATACCTAAATTTGAATTCCGGTGCTTTAAGATCGAAAATGAGCATGTACTTGCTTCCGATTCATCGGAAGAAAGCTCGTTGTCCGACGGTGAAGACGATGAGCGACAGTTAATGGTTTCGGTTCCGTCGAAGATTACAGAAAGCCCATCTGAAACTCTTCAAGTTACAGCTTTTCATCCTTCGCTTGGGT
i caeJap4.Scaffold17966 C 0 I 245

a score=910.000000
s ce10.chrX             1173741 1 + 17718866 T
s cb4.chrX                46534 1 + 21540570 T
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig24  300046 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 I 54
s caeSp111.Scaffold514    95749 1 -   141934 T
i caeSp111.Scaffold514  C 0 I 35
s caePb3.Scfld02_62      408087 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   49556 245 -   140921 I

a score=177.000000
s ce10.chrX             1173742 15 + 17718866 GGTA-AAGTTACTTTA
s caePb3.Scfld02_62      408088 16 -   783054 TGTCTGAATCACTTta
i caePb3.Scfld02_62     C 0 I 24
e caeJap4.Scaffold17966   49556 245 -   140921 I
e cb4.chrX                46535 35 + 21540570 I
e caeSp111.Scaffold514    95750 35 -   141934 I
e caeRem4.Crem_Contig24  300047 54 +  1162296 I

a score=0.000000
s ce10.chrX             1173757 580 + 17718866  
e caePb3.Scfld02_62      408104  24 -   783054 I
e caeJap4.Scaffold17966   49556 245 -   140921 I
e cb4.chrX                46535  35 + 21540570 I
e caeSp111.Scaffold514    95750  35 -   141934 I
e caeRem4.Crem_Contig24  300047  54 +  1162296 I

a score=520.000000
s ce10.chrX             1174337 13 + 17718866 ATTCAAATTCTAT
s caeJap4.Scaffold17966   49801 13 -   140921 ATTTATAATCTAC
i caeJap4.Scaffold17966 I 245 C 0
e caePb3.Scfld02_62      408104 24 -   783054 I
e cb4.chrX                46535 35 + 21540570 I
e caeSp111.Scaffold514    95750 35 -   141934 I
e caeRem4.Crem_Contig24  300047 54 +  1162296 I

a score=-420.000000
s ce10.chrX             1174350 4 + 17718866 -AAGT
s caeRem4.Crem_Contig24  300101 4 +  1162296 -aatt
i caeRem4.Crem_Contig24 I 54 C 0
s caeJap4.Scaffold17966   49814 4 -   140921 CAAT-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      408104 24 -   783054 I
e cb4.chrX                46535 35 + 21540570 I
e caeSp111.Scaffold514    95750 35 -   141934 I

a score=910.000000
s ce10.chrX             1174354 1 + 17718866 T
s cb4.chrX                46570 1 + 21540570 T
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig24  300105 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    95785 1 -   141934 T
i caeSp111.Scaffold514  I 35 C 0
s caeJap4.Scaffold17966   49818 1 -   140921 T
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      408104 24 -   783054 I

a score=79965.000000
s ce10.chrX             1174355 98 + 17718866 TTGCAGATCTCTAATCGAAAATCGAGAAATGGAAGATGAAGAAAGTGCAAGTGGGGACCAACTACCAATGATTCACAAATCAGTGTCTTTCCAAGGTA
s cb4.chrX                46571 98 + 21540570 TTACAGTTCGCTTATTGAAAACCGGGAGATGGAAGATGAAGAAAGTAGCAGCGGAGAGCCACTTCCAATGATACACAAATCAGTTTCATTCCAAGGTA
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig24  300106 98 +  1162296 ttccagatctctCATCGAAAACCGAGAAATGGAAGATGAAGAGAGTGCAAGTGGAGAGCCGCTACCAATGATTCATAAATCGGTCTTGTTCCAAGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    95786 97 -   141934 TTTTAGATCTTTAATTGAGAATAGAGAGatggaagacgaagagagCGAAAGTGCAGAGCAACTACCAATGATTCACAAATCAGTTTCGTTCCAAGGT-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408128 97 -   783054 TTTCAGATCTCTCATTGAAAATCGAGAgatggaagatgaagaaagtgCAATTGGAGAGCCACTTCCAATGATTCACAAATCGGTGTCATTCCAAGGT-
i caePb3.Scfld02_62     I 24 C 0
s caeJap4.Scaffold17966   49819 90 -   140921 --TCAGTTCCCTAATCGAGAACAAAGAACTGGAAGATGAAGAACTATCC------GACTCTCTCCCCATGATTCATAAATCCGTCTCGTTCCAAggta
i caeJap4.Scaffold17966 C 0 I 284

a score=-4153.000000
s ce10.chrX             1174453 26 + 17718866 CACATACCAAATAGGATG--------CCCCCATA
s caeRem4.Crem_Contig24  300204 19 +  1162296 -------TAAAAGAGAGGTGCAACTT--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    95883 10 -   141934 --------AAACGAGAAA----------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408225 10 -   783054 --------GAGTGGGATT----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   49909 284 -   140921 I
e cb4.chrX                46669 27 + 21540570 I

a score=-8883.000000
s ce10.chrX             1174479 25 + 17718866 ----TACA---TATACTTAATTTTATT--TCTCA
s cb4.chrX                46696 11 + 21540570 ----TGCA----------------GAT--ATTT-
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig24  300223 25 +  1162296 TATTtgca-------ttcatttttgat--gtttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    95893 27 -   141934 ----TGTA---AAtgtgaaaaattaataatatCA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408235 28 -   783054 ----TCTAAAGAACGACAAGAATAAAT--TAATT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   49909 284 -   140921 I

a score=90343.000000
s ce10.chrX             1174504 106 + 17718866 CAGGACCCTCTCATATGCAAATGCGGCAGAGTATCTCAACAGAAAGTTGTAGTCAAATATCAAGGAGTGCAATTCAAGTGGCGACGCCTGAAGAAATACGGTTAGT
s cb4.chrX                46707 104 + 21540570 -AGGACCATCGAACATGCAAATGCGACAAAGCATTTCCACAGAAAGTTGTagccaaatttcaagaagTGCAATTCAAGTGGCAACTCCTGAGGAAATACGGTGAG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  300248 106 +  1162296 caggCCCATCGAACATGCAACTCCGACAAAGTATCTCAACGGAGAGTTGCAGTCAGATATCAAGAACTGCGATTCAGGTAGCAACACCTGAGGAGATACGGTTAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    95920 106 -   141934 CAGGACCATCCAACATGCTAATGAGACAAAGTATTTCTACGGAAAGCTGCAGCCAGATATCTAGAAGTGCTATTCAAGTTGCAACGCCTGAAGAAATCCGGTTAGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408263 106 -   783054 CAGGTCCATCTAATACGTTAATGAGGCAAAGCATCTCAACAGAAAGTTGCAGTCAAATATCAAGAAACGCAATTCAGGTTGCAACTCCTGAAGAAATAAGGttagt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   50193 106 -   140921 CAGGTCCAACAAATTTGCATATGAATCGAAGCATCTCAACAGAAAGTGCTAGtcaaatagcaaaaaatgccATTCAAGTGGCTACTCCAGAAGAAATTAGGTGAGT
i caeJap4.Scaffold17966 I 284 I 85

a score=-80840.000000
s ce10.chrX             1174610 232 + 17718866 TT-----GAATGCAATTAATTTGGAA----------TGATGATATATTTGGTTTATAATTTTATGGATTGAAGTGGGAATGGTATTAA--TAGCATATATCCAGTAAAACAAATAT------TACAAAAAAGTTGCACTTTTTGCT--------------------ATTATTTATCATGAAAATCATTCCTATAAATACAGATACCCAAAAGAAAAAC--------------------------GTTTAGAAATTTTTTTAACCT-----TT--------------------------CTGATAATATAAGTG------------------------------------TTCCCTAACAACAATTA--------TC
s cb4.chrX                46811  90 + 21540570 ------TGTATGTAAACAATATAGATGAAAATTTG-------------------------------------------------------------------------------------------------ATGTGTCTTGAAACTGAA--------------------------ATACT------------------------------GAATATT---------------------------------------------TTATAAGTT----------------------------AATAGCATTGAGT-------------------------------------------GTTATAA-----------TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  300354 292 +  1162296 TT----TGAATGTTATTATTTTGGATGTGATTTTACGGAGAATTGATTTTCTTACTTCTTATTT--------------------------CTGATTGTATCGGATA----------------TTT----ATCATGAGTGTTTAATTTGAAT---------------GATAGGC-AGATATCAGTTATTGTTCTGACTGTT-----ATAAAGGAATATTTAAGTTTTTGATAGGCATGGAGGGCACTGTATCAACCGA-ttaaattatgaattttaatAGGAGactctattcaaaatttccaaaagtctTGAGTTGAGCCAGAATTGTAAACTAACAT------------TATCCTAACTATAAAACTGTGTGATTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    96026 292 -   141934 TT---AAAAATATGAGTTTGACATACTAACCTGTTTTGAAGCtccatattttttcttattcgtttga-----------aaaatttccacCCTGAAAATTTCACATAAA--GACTAGTGTGGCTTCAAACATTTTGCACGTTTAAAATAAGCCACGTCTCAATACAAAACAGTCAAGATGAAAATAACAGTGTCCGATGTTTTAtgttaaaagaaaatt--------------------------gtgtctcatttttctcaaagtaTGTACT--------------------------ACAAAATTTTATGGC-------------TAGAATGAtgtgttttctgtttctttcttcaccTTAAACAAATAC---AT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408369 194 -   783054 ttttgttgaatgT---TGTGATGGAATGtgtttttttgggtgtttatatattagataacgtttttgat----------atggttttta--ttgatattttcg---aaa--------------tttgaaaaatttacgC-TTTGAGTTAAGC---------------CACAGTTAAAAT--------------------------------------------------------------------------------TTGGAGTGTAT-TT--------------------------CTACAATTCTAAAGT-------------TAACTTCACAT------------CCTATGAAccttgaaaaattcta--at
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   50299  85 -   140921 I

a score=122525.000000
s ce10.chrX             1174842 365 + 17718866 TGCATGACGCATGTTTGGGAGTTCCTCCATA----TTCTTACAGAGCATTGCTCCGACCATATCTTGAAGCCAAGTATGGCATACCGTATCAGCATGGAATCAAATCTTTTCCCATTGACGTGCACACCCCTCCAAATAACACACCGTCCAGGAGATCGTCAAAGTATAATTCGTTTGTGTCACTTTATGAGCATACGAGAGATGATCAC---------AAGTTGGTTTTTTTTTTC-AAATTCAGA------------CATTTTTCTGTTTTTTTTGTG------TAGTGCACCTTATCAGTTTT-GA-AATATCCATTT--------GTTTTAATAAGTTTTAAAATAATCAACAAGTT----------------------------------CTAGAAACTTCGTTGCGTCGACAATTAAAGAAACCGAC------GAAGACCC
s cb4.chrX                46901 376 + 21540570 TGCATG-Gctgtgt---gagttttttt--------gttttacagAGCCCTACTGCGGCCTTATCTCGAAGCAAAATATGGTGTGCCGCATCAGCATGGAATGAAATCTTTCCCTATTGATGTTCATACTCCACCAAACAACACACCATCCAGGCGATCGTCAAAGTACAACTCGTTTGTATCTCTATACGAGCACACTAGAGATGATCAC---------AAGTTGGTTCAGTTTTCatttata----------------taattttgaaTGCTTTTGATGATGA------GAATGATTTAATTATT-GC-AATTCGCACTGCCT-----GTTTTCTCAGTGATTGAGA----CTAACGGTT------A-----GGTAATTTCt------gtgatttcagaaattttgtcGCATCTACAATCAAAGAAACAGATTTGGAGGAAGAACC
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24  300646 390 +  1162296 TGCATG-AGCATGt---ggattgtttttttttctaattttacaGAGCCTTGCTCCGCCCTTACCTAGAGGCAAAATATGGTGTACCGTATCAGCATGGAGTAAAATCATTTCCGATTGACGTGCACACACCACCAAATCACACACCGTCAAGACGATCATCAAAGTACAACTCATTCGTGTCTCTTTATGAGCATACCAGAGATGATCAC---------AAGTTGGTTTAGTTTTTA-ATATC----------------Catgttttaatatttttggtt-tgatCCATTGAATGTGTTTATTATTAGT-TACTAGCACTaccttattgattttttttgtttttgaagtcaTCCAACTG-----------------AATTTC--------TCGTTCTAGAACCTTTGTGGCATCCACCATCAAAGAAACCGATTTGGAAGAGGAGCC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    96318 366 -   141934 TGCATGTAGCATG-----agtatgttttttt----taattacaGAGCACTGCTCCGTCCTTATCTTGAGGCGAAGTATGGTGTGCCATATCAGCATGGTATGAAATCCTTCCCCATTGATGTTCACACTCCACCAAATAACACACCATCGAGAAGGTCCTCCAAGTACAACTCTTTTGTGTCATTATATGAGCACACCCGCGATGATCAC---------AAGTTGgttcagtttttg-atgtt----------------ttttcttg----tgttttgtg-------------ttttttgagattttgt-tAGTGACGTAA------------TCGATGTAAA----------AAAGTGTT------AAGAATGGtggttttgagaaaaatgctttcagaaattttgtaGCTTCTACCATCAAGGAAATAGAACTAGAAGAAGAACC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      408563 365 -   783054 tgCATGAGGCATGG---AAGTTTGtttctta----aattttcagagcactCCTCCGACCTTACCTTGAGGCGAAGTATGGCGTGCCGTATCAGCATGGAATGAAATCTTTCCCAATTGACGTTCACACCCCACCCAATAACACACCGTCAAGGAGATCATCCAAGTACAACTCGTTTGTGTCATTATATGAGCACGCAAGAGATGATCAC---------AAgttggttttgttttca-gcatt----------------tatttttg-----gtttgatg-------------tgtttttattttttttattttaacgtta--------attttGAATGGGAATG-------CAGAGTGTTCCCTGGAAACGCACTCTTTTCAGCGCAAGTGTTCAGATAACTCTTGAA----------------AAACATAATCAAGAtcgaaatt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   50384 361 -   140921 TGCATGAAGCATGC---GTGA--------------GCATTGCAGAACACTTCTTCGACCATATCTTGAAGCAAAATACGGAATACCGTATCAGCAAGGAATAAAATCATTTCCCATTGATATTTGCACTCTCCCGAACCGTACTCCTTCTAAAGCACCTTCTAAGCACAACTCATATCTTTCGTTGTACGAATCATCCAAAGAAGATCGCCAGTATCAGAagttggtttttattttt-attttctcactATTCAGTTATTATGCTTG----TGCTTGgtg-tgttgtgttgtgttgttTCAAATTACAT-TGTCTTCATCA--------ATTTCC------------------------------------------------------ATAATTTCAGAAACTGTGTTGGTTTACCAACAAAAGAAGCAGACGTAGAAGAGGTCTC
i caeJap4.Scaffold17966 I 85 C 0

a score=-6197.000000
s ce10.chrX             1175207  9 + 17718866 TGGCAAAT-----C-
s caeRem4.Crem_Contig24  301036  3 +  1162296 -----AAT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    96684  8 -   141934 -TATGAAA-----C-
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      408928 13 -   783054 -ctcgaaaagtttc-
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   50745  9 -   140921 -AAAAGAA-----CA
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                47277  9 + 21540570 I

a score=2215.000000
s ce10.chrX             1175216 41 + 17718866 TGACA----A--GAAACAAA---CATCCAGTAA-------AGATGTGGCTCCCGATT
s cb4.chrX                47286 41 + 21540570 TGATA----A--AAAACTGT---CGTTTTCTAA-------AGATGTAGCGCCAGAGT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24  301039 41 +  1162296 TAGCA----A--AAAACCGG---GTTCTTCAAA-------AGATGTCGCTCCGGATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    96693 44 -   141934 Tgacatca-a--aaaacaat---ccTCTTCGAA-------GAATGTTGCTCCAGAGT
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      408942 39 -   783054 tgaactcaca--aaaaaaat---tctcacaaAA-------------TCTTCCTGATT
i caePb3.Scfld02_62     I 1 I 255
s caeJap4.Scaffold17966   50754 53 -   140921 GGACA----AGCAAAACAATTCATCCTTTCGAATCAAGACTGATACGTCTCGCGACT
i caeJap4.Scaffold17966 C 0 C 0

a score=15723.000000
s ce10.chrX             1175257 28 + 17718866 TTATGCCTTGGCCGTCTGCAGATGAGGT
s cb4.chrX                47327 28 + 21540570 TTATGCCGTGGCCGTCAGCCGATGAGGT
i cb4.chrX              C 0 I 73
s caeRem4.Crem_Contig24  301080 28 +  1162296 TTATGCCATGGCCATCTGCTGATGAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    96737 28 -   141934 TTATGCCATGGCCATCTGCTGACGAAGT
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   50807 28 -   140921 TTTTACCATGGCCTTCCTCGTCAGAGGT
i caeJap4.Scaffold17966 C 0 I 39
e caePb3.Scfld02_62      408981 255 -   783054 I

a score=-245.000000
s ce10.chrX             1175285 4 + 17718866 AACT-
s caeRem4.Crem_Contig24  301108 4 +  1162296 AACT-
i caeRem4.Crem_Contig24 C 0 I 32
s caeSp111.Scaffold514    96765 4 -   141934 -ATTT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      408981 255 -   783054 I
e caeJap4.Scaffold17966   50835 39 -   140921 I
e cb4.chrX                47355 73 + 21540570 I

a score=91.000000
s ce10.chrX             1175289 1 + 17718866 A
s caeSp111.Scaffold514    96769 1 -   141934 A
i caeSp111.Scaffold514  C 0 I 32
e caePb3.Scfld02_62      408981 255 -   783054 I
e caeJap4.Scaffold17966   50835 39 -   140921 I
e cb4.chrX                47355 73 + 21540570 I
e caeRem4.Crem_Contig24  301112 32 +  1162296 I

a score=0.000000
s ce10.chrX             1175290 323 + 17718866 GTGTTTCTGCCACTTTATTGGAGATCGTCGATCAAAAAAAATGTCTTCAAATATTAGTGCTATAGTTTTCtcaaaaagtgacaaaaacttagtaattgccactttttgactgagaataaaaatgtttttcaaattcattttgaaaagttttattattacattaaattattccagtaccaagtagttttgaccaattttcccattggcgctactctatttttaaTACTGACATGCATTATTACCAGGTACACCCATGTGACGGAACATTGTCACTTATTCGGCAACtacactcaaaataaataaaaaactgggtggcgtgtact
e caePb3.Scfld02_62      408981 255 -   783054 I
e caeJap4.Scaffold17966   50835  39 -   140921 I
e cb4.chrX                47355  73 + 21540570 I
e caeSp111.Scaffold514    96770  32 -   141934 I
e caeRem4.Crem_Contig24  301112  32 +  1162296 I

a score=-1321.000000
s ce10.chrX             1175613 157 + 17718866 gcagaaaacctcatat-ttaggccccgcctttttttcgtcc----actcacggagaaaaggcgggcctaaatatgaggttttctgcagtacacgccacgcagtttttttattttgagtgtaAAACAGTTTTTT----------------------TTTCAAATTTGCAT------------------AACCGTTTTAGACAC
s caePb3.Scfld02_62      409236 179 -   783054 AGGGAGAATCCCATGTGTTACTCCCAGGTTTTAATGGGTCCCAGTAGTCCTGGGG--TAGGAGAGTTGGAAAACAAGGTCCTAC-CAGCGCAGG-----------------TTTGAG---AGACTAGCTTTCTCAAATTGCTTACTCATGGACCCTCTCAAAATCCTATCCGATTGTGACTATTATGAACTGTTCATAACGT
i caePb3.Scfld02_62     I 255 C 0
e caeJap4.Scaffold17966   50835  39 -   140921 I
e cb4.chrX                47355  73 + 21540570 I
e caeSp111.Scaffold514    96770  32 -   141934 I
e caeRem4.Crem_Contig24  301112  32 +  1162296 I

a score=-786.000000
s ce10.chrX             1175770 11 + 17718866 ------TACACACTTAA
s cb4.chrX                47428 11 + 21540570 ------TACAAATTATA
i cb4.chrX              I 73 C 0
s caePb3.Scfld02_62      409415 11 -   783054 TCGTCATGCAA------
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17966   50835 39 -   140921 I
e caeSp111.Scaffold514    96770 32 -   141934 I
e caeRem4.Crem_Contig24  301112 32 +  1162296 I

a score=-96.000000
s ce10.chrX             1175781 1 + 17718866 A
s cb4.chrX                47439 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    96802 1 -   141934 A
i caeSp111.Scaffold514  I 32 C 0
s caePb3.Scfld02_62      409428 1 -   783054 T
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17966   50835 39 -   140921 I
e caeRem4.Crem_Contig24  301112 32 +  1162296 I

a score=124810.000000
s ce10.chrX             1175782 310 + 17718866 TTTCAGGCACGAGCTCTACGAGAAAAGATGAAATCCAAAACTCCGCTAATGCTCACAAAAACAACTGTGGAGGAAAAACCGAA------AGGCGGAAAATCTTCAGAAT------------CGGAATTCCGACCGCCTGTACCAATTCATAGAAAATATAATATTCAGGT----------------------------------------A----------CTTAGCAATTTT------------------------TAAACAACTTGGAC------------------ATTTGAA-----------TTTCAGACAACGGAGGAAGAAAACGAGGAGGAGGAGACAG-----------ACTCAGCTCCGGAATCTTCCAAAAAACGCTTTAGAATTTCCGTGTCGCCGACGAAGACTATAGCTCCAGCATCTGCAAGCAGGT
s cb4.chrX                47440 313 + 21540570 TTACAGGCAAAGGCACTCCGTGAAAAAATGAGGCTCAAAGCACCTCTTATGTTAACAAGAGCATCTGTGGAGGAGACACCAAA------AGGTGCAAAAAGT---GAAT------------CTGATTTCCGACCACCTGTTCCAATACACAGAAAGTATAATATCCAGGt----------------------------------------aaaagaactgaaaatttgtttct-------------------gaATGTGAGT---CAAAATTCATTTCTAGGC------TActgga-----------------------gaagaagacaat---AAAGAGGAGACAG-----------AAT---TGCCGGAGTCTTCGAAGAAAAGATTCAGAATATCCGTCTCACCAACAAAAACTATTCAACCAGCTTCTACAAGCAGGT
i cb4.chrX              C 0 I 66
s caeRem4.Crem_Contig24  301144 407 +  1162296 TTCCAGGCGAAAGCCCtacgagaaaaaatgaaactaaaagccccactaatgctatcaaaaacgactgttgaagaaaaaccaaa------aggtGGAAAGAGC---GAGG------------GAGATTTCCGACCACCTGTCCCGATTCATAGGAAATATAATATTCAGGTGACTCGAATGTTTCATAACttaagaaagaaagaaagagagagaagagacggaAACGCATTTCTCACATATTTTGAGAAGATAGAAGTTGATTAcataaaaattatgtttatgttttttatGTTGGAAAATTATATTCTTTTAGGCAACcgaggaagagaaa---gaggaggaaACAG-----------ATTCCATGCCGGAGTCGTCGAAGAAGAGGTTCAGAATATCGGTCTCACCAACCAAGACTGTTGTCCCTGCTTCTACCAGCAGGT
i caeRem4.Crem_Contig24 I 32 C 0
s caeSp111.Scaffold514    96803 309 -   141934 TTGCAGGCCAAGGCACTCcgtgaaaaaatgaagttgaaAGCACCTCTTATGCTTACCAGAACAGCAATTGAGGAGAAGTCGAAAGAGGGAGGAGCAAAAGCT---GAAG------------GAGATTTTCGACCACCTGTTCCAATTCATAGGAAATATAATATCCAGGT----------------------------------------AT--GAGTCATaaataagatttt------------------------tgagaaaatgaa--------------------------------------tttcagacaatggaagaagaaaaa---gagaaagagacgg-----------ACTCAATGCCAGAGTCTTCGAAAAAGCGATTCAGAATCTCTGTTTCTCCCACCAAAACTGTGTTGCCCTCTTCTACAAGCAGGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      409429 296 -   783054 TTCCAGGCAAAAGCACTTCGTGAGAAGATGAAACTCAAAACTCCTTTGATGCTCACTAGGACTACtgttgaagaaaaaccaaa---------atcaggATCT---GAA------------------TTCAGACCGCCTGTTCCAATTCACAGAAAGTATAATATACAGgt----------------------------------------a----------aattgtgatttt------------------------tgaatcagtgGAAA------------------TATTGAA----------CTTTCAGACAACCGaagaggaaaac---gaagaagagacAG-----------ATTCAGCTCCGGAATCCTCGAAGAAgagattcagaatttcagtgTCACCTACTAAAACTGTGTTGCCTGCCTCAACAAGCAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   50874 331 -   140921 TTTCAGGCTAAGGTGATGCGCGAAATTATGCGaacaaaaactccgttaatgctcacaaaaaccactgttgaaacacaacaaaa------gaacacaaaaaTC---GGAGTTCCTGATTCCCGAGATTTTAAACCCCCTGTTCCTATTCATCGAAAATTCAACTTGCAGGT----------------------------------------GAgattaaca-agaaaaaattgt------------------------taattACGAAAAGTTTA---------------GGCAAAA-----------TCAGAGACACCCCAAGCA---------GAAGAAGGAACATCCGATTCTAACATTCAAAGC--GATTCATCCAAGAAACGCTTCAGAATATCCGTTTCCCCCACAAAAAGCATAGTTCCCTCTTCAACAAGCAGGT
i caeJap4.Scaffold17966 I 39 C 0

a score=546.000000
s ce10.chrX             1176092 1 + 17718866 A
s caeRem4.Crem_Contig24  301551 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97112 1 -   141934 A
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      409725 1 -   783054 A
i caePb3.Scfld02_62     C 0 I 75
e caeJap4.Scaffold17966   51205 0 -   140921 C
e cb4.chrX                47753 66 + 21540570 I

a score=-691.000000
s ce10.chrX             1176093 92 + 17718866 TAAACTTTGAAAAAATATAAATGCAGTATTTTATGGCGCTAATTATAGTCCATGAAATAAAATTTGGAATATTTAATTCAAAAAGCACTGAC
s caeRem4.Crem_Contig24  301552 49 +  1162296 ------------------------AGTGACTCA--ATACTGTTTATggtttttg-----------------cttatttttaaTAATACTAAC
i caeRem4.Crem_Contig24 C 0 I 24
e caePb3.Scfld02_62      409726 75 -   783054 I
e caeJap4.Scaffold17966   51205  0 -   140921 C
e cb4.chrX                47753 66 + 21540570 I
e caeSp111.Scaffold514    97113 28 -   141934 I

a score=0.000000
s ce10.chrX             1176185 47 + 17718866 CTAAATTTGACATGCACTGACCAAAATGTCAATATGCACTGACCACA
e caePb3.Scfld02_62      409726 75 -   783054 I
e caeJap4.Scaffold17966   51205  0 -   140921 C
e cb4.chrX                47753 66 + 21540570 I
e caeSp111.Scaffold514    97113 28 -   141934 I
e caeRem4.Crem_Contig24  301601 24 +  1162296 I

a score=-2649.000000
s ce10.chrX             1176232 318 + 17718866 AAAATGCTTTTCTTTATATGTTCATTTATTGAGAAGAAAAAAATCAATAAATATAATTAGATCCCGCAAGAGAATCGTCATTCTTTCACTATAGGTTGTCCATTTTCAGTTTTTTGACAGGTTTTCGTTATTTTTAAAGTTAAATTGACCCGTTAAAAATTAGAACTAAAATAAATTCAAAAATAAGTTTAAATATCAAAC-------ATAGCAGTAATACTTAAAAATAAAACGAAGAGCGATATTTTCTTCAAAATTTTTTTTTGTATTGTAATTCCCCGGATTACCATTGAAGTATGCTGACAGCAATGTGATGTTCATCTC
s caeRem4.Crem_Contig24  301625 192 +  1162296 GAAGTGCCTTTTT--------------------------AGAATTAGTGAT--------GGTTTCGACAATTAatcga------------ataaatt-tttattttcagtattt--acTAGTTTACGCTGTGATAGAACATAAGTCTAACCTATactattt----ccagatt---ctcagAA-----TCTAGACACCATATGTCTCTGATAACAATAACACTCATACAC-----------------------------------------------TCACCAGTCTTCCAT--ATGTATGC-----------------------C
i caeRem4.Crem_Contig24 I 24 C 0
e caePb3.Scfld02_62      409726  75 -   783054 I
e caeJap4.Scaffold17966   51205   0 -   140921 C
e cb4.chrX                47753  66 + 21540570 I
e caeSp111.Scaffold514    97113  28 -   141934 I

a score=-111.000000
s ce10.chrX             1176550 17 + 17718866 TATCAAAATAGAATAAA
s caeRem4.Crem_Contig24  301817  4 +  1162296 TATT-------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   51205 17 -   140921 TGtcaaaagaaaataaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      409726 75 -   783054 I
e cb4.chrX                47753 66 + 21540570 I
e caeSp111.Scaffold514    97113 28 -   141934 I

a score=-278.000000
s ce10.chrX             1176567 2 + 17718866 A--T
s caeJap4.Scaffold17966   51222 4 -   140921 aact
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      409726 75 -   783054 I
e cb4.chrX                47753 66 + 21540570 I
e caeSp111.Scaffold514    97113 28 -   141934 I
e caeRem4.Crem_Contig24  301821 0 +  1162296 C

a score=-4301.000000
s ce10.chrX             1176569 10 + 17718866 AATAGTA------------AAG
s caeSp111.Scaffold514    97141 11 -   141934 ---AGTAT--------CTGAGT
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      409801  8 -   783054 AATAATA--------------A
i caePb3.Scfld02_62     I 75 C 0
s caeJap4.Scaffold17966   51226 17 -   140921 ---aataTTTCTTTTGTTGG--
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                47753 66 + 21540570 I
e caeRem4.Crem_Contig24  301821  0 +  1162296 C

a score=140899.000000
s ce10.chrX             1176579 168 + 17718866 TTCTAGAGCTCAACATAAAATCGTATCACAAGCATCGTCTAGCAGCTCAATTCCACATGGACGGCAAC---CGGATCCAAACAAGAAAGCGTCGCTTGTTTTGCCGCCGTTAAGAGCCCCACGTGTTCAGTTTGATGAGGATGACTCTCCGCGGCAAATTGATTGATTT------TT
s cb4.chrX                47819 171 + 21540570 TTCTAGAGCTCAACATAAAATCGTATCGCAAGCATCATCGAGCAGTTCAATTCCACATGGACGTTCAG---CTACTGTCAACAAGAAAACGTCGCTTGTTTTGTCTCC---ACGAGCTCCGCGTGTGCAGTTTGATGAAGATGATTCTCCACGACAAATTGATTGAttttacttgtt
i cb4.chrX              I 66 C 0
s caeRem4.Crem_Contig24  301821 168 +  1162296 TTCCAGAGCACAACATAAAATCGTATCGCAAGCATCCTCAAGCAGTTCAATTCCACATGGACGTCAGC---CGATTCCAAACAAGAAATCGTCACTTGTTTTGTCGCC---GAGAGCTCCACGTGTTCAGTTTGATGAAGATGATTCTCCACGACAAATTGAATGAttttgt---tt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97152 168 -   141934 TTTCAGAGCACAACACAAAATTGTATCACAAGCCTCATCTAGCAGTTCAATTCCTCATGGACGTCAACCATCatctcaaaacaaaaagatttcGCTTGTTTTGTCGCC---AAGAGCACCTCGTGTTCAgtttgatgaagatgattcTCCAAGACaaattgattgaatt------ct
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      409809 165 -   783054 TTCCAGAGCGCAGCATAAAATCTTATCACAAGCTTCATCAAGCAGTTCAATTCCACACGGACGTCAAC---CCcctcaaaacaagaaaacttcGCTTGTTTTGTCGCC---AAGAGCACCACGCGTTCAGTTTGATGAAGATGATTCTCCTAGAcaaattgattgaatt------tt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   51243 162 -   140921 TTTTAGAGCACAACATAAAATATTGTCTCAAGTGTCCTCAAGCAGCTCTATTCCCCAAGGACGTA------GTACTGATGATGGAAGGACCTCTAACGTTGTATCATC---ACGCGCGCCACGTGTCCAGTTTGATGAAGATGATTCTCCAAGACAAATCGAATgagct------tt
i caeJap4.Scaffold17966 C 0 I 1457

a score=-23265.000000
s ce10.chrX             1176747 272 + 17718866 TTTTGTTTTTTTCGAAGAAATCTTTTGCTCCCTCCGGTGGACTTGCTCCTGGCTGCAGGAA-TATCCGG--------TTGAAATATT-TAA-------------------------------TCTAATTCTAGTTTCATT------TCGTTTTTTTTCTCTTTTTTTGCCATTTTTATTTGTGAACATTCCATCGAAAAAACTCATTTTCTGAAACAAAAATTCACAAAACTCTTTCTAACTGATCTCTCTG--TTTTCTTTTCATATATTTAACTATTTT--------ATTCAATTTCTCATTTTTCTGTCACTACTACTCTATTT--CT
s cb4.chrX                47990 218 + 21540570 tttcgttcatt---------tttatttttctttctgacCAAATAAC------------CAG-GTTTTAGAATTTAATTTG-----CA-TTA-------------------------------ACACATTCCGAACCCAAAGAGCCCGTACactgttaaaatttttccacG------------CCACTTTGCTTTC-TGGATCTCTTGCAATG-------TTTTCccaagaacattttt------ttctgttg--cttCA-------------TACCATTCTTACAAACAATTTggttccagtttttt-------tttaaa--ttttg----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  301989 210 +  1162296 ttccgttcattttg--tttctttacttttcCATCCGGTGGAATTGT------------GAG-CATCCGG--------TTG-----TT-TTG-------------------------------TCTGACTATGTAACCAGG-------------TTTTAGATTTATTTGCAACT--------TACACATTCCATCG-AAAAACCCGTACATTGTTATAC-ttttttccatgccattctt------tttcgatgatctcca-------------atctatttt--------atttcatttcgttttttt-------ccctaactttttt----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97320 187 -   141934 tgtaat--------------ttttttggtt--tccgGTGGAACTGT------------AAG-CGTCCGG--------TTG-----TTCTTG-------------------------------TCTGACTATGTAACCAgg-------------ttttagaattttttgcattC--------CACACATTCCATCG-AAAAACCCGTTCATTGTTAAGCGTTTTACCAACACTCATTCC------GATCTccg----------------------------t--------gttttttttttgcttttt----cattctgatgCAGTATT---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      409974 226 -   783054 tttagt--------------gcTCCGTTTTCATCCGGTAGATTCAT------------TTGCCGTTCGG--------TTG-----TTGTTTATTTGCATTCACGTTTATTTTAATTTCGAACTCTGTTCAAGTAACCAGG-------------TTTTAGTACTTTTTACAAGT--------TTAACATTCCATCG--AAAACCCTTACATTGTTAAAACTTTTCACAGCCGTATTCTT------GATCTCTg--ct---------------------tatt--------attttatttcattttttt----aaatatcaacctattttt--
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966   51405 1457 -   140921 I

a score=-2213.000000
s ce10.chrX             1177019 15 + 17718866 AAAATACCCGCAAAG------
s cb4.chrX                48208 19 + 21540570 aaaattaacacTATTG--ATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  302199 21 +  1162296 gatattgaaattattattata
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97507 15 -   141934 AATATTCTCACTAAT------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      410200  5 -   783054 I
e caeJap4.Scaffold17966   51405 1457 -   140921 I

a score=38167.000000
s ce10.chrX             1177034 131 + 17718866 TAAGGTA---------CATTAAATGATCTTGAACCCCTTGCAAAACCGTTCCATTACGT---TTTTCCGGAAACTTTTCCTGTTTTCTTCTTTCCTTTTC--AATCATTTCGGTTCGTTCATATCA-CCTTAATAAAGCTTGCTTT
s cb4.chrX                48227 115 + 21540570 TATGAAAC--------TGTCAAATGACTTCGAAC----AATATTATTGCTTTTCCAAGTAAGATTTCCATC---TTTTTATG--------------TTCC--AATCGTTTCGGTTTGTTCATATCATTTCTAATGAAGCTtgcttt
i cb4.chrX              C 0 I 492
s caeRem4.Crem_Contig24  302220 115 +  1162296 tATGTTACCTAA----TTTTGAAGGATCTTGAAC----TGCATTACCGTTCCACCGAGT---ATTTCTGAA---CTTTCCTG--------------TTCC--AATCATTTCGGTTCGTTCATATCA-CTCCAATAAAGCTCGCTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97522 100 -   141934 ----------------TTCTAAATGATCTTGAAC----TCTATTACCGCTTCACCGAGT---ATTTCTGAA---CTTTCATG--------------TTTC--AATCATTTCGGTTTA-TCATAT---CTCTgataaagttttcttt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      410205 112 -   783054 ---------tcagtttttttgaatgatcttGAAC----TGCATAACCGTTCCATCTAAT---ACTTCTGaa---ctttcctg--------------tttcaaaataatttcggTTCGTTCATATCA-CTCCGATAAAGCAagcttc
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I

a score=546.000000
s ce10.chrX             1177165 1 + 17718866 T
s caeRem4.Crem_Contig24  302335 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    97622 1 -   141934 t
i caeSp111.Scaffold514  C 0 I 504
s caePb3.Scfld02_62      410317 1 -   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I

a score=-426.000000
s ce10.chrX             1177166 6 + 17718866 -ATAAAC
s caeRem4.Crem_Contig24  302336 6 +  1162296 -TTGAAC
i caeRem4.Crem_Contig24 C 0 I 691
s caePb3.Scfld02_62      410318 6 -   783054 tttcaa-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I

a score=364.000000
s ce10.chrX             1177172 4 + 17718866 ATTT
s caePb3.Scfld02_62      410324 4 -   783054 attt
i caePb3.Scfld02_62     C 0 I 275
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I
e caeRem4.Crem_Contig24  302342 691 +  1162296 I

a score=0.000000
s ce10.chrX             1177176 2183 + 17718866  
e caePb3.Scfld02_62      410328  275 -   783054 I
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342  492 + 21540570 I
e caeSp111.Scaffold514    97623  504 -   141934 I
e caeRem4.Crem_Contig24  302342  691 +  1162296 I

a score=810.000000
s ce10.chrX             1179359 86 + 17718866 AACATCTATATAGCACATTATTGT-----TTTTTCGGAACATTTTCTTGGAGTTTTTCCCACCATGACCACCAAC-TCTTGGTACTCG-AAAA
s caePb3.Scfld02_62      410603 89 -   783054 AACGTCTATATAGCACAATCCCATAATCGTTTTTCTCTAGATTTT----AGATTTTCGCCTCTTTCAGTTCTGGCGTTTTGATGTTCtcaaaa
i caePb3.Scfld02_62     I 275 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I
e caeRem4.Crem_Contig24  302342 691 +  1162296 I

a score=10710.000000
s ce10.chrX             1179445 191 + 17718866 ---------------------------GACAAAGGAGGGCTGGAGGCGGAGTTAACTAGAGCCTTTTTGCTCCGCCCCAGATGTT-GGGCCAAAGGATGCTCTCACGGAAGAGAAGAAGGCGC-TT----CTCTCAACT--------CTCGCCACGACGGGCAATCATTGA----GCGAGACTTT-----------TTTTGTGTTGGAAAATTTGATGCACTCTTTTATTT--CGTTCTGTTTCATTTC
s caeRem4.Crem_Contig24  303033 188 +  1162296 -------------------GAGA----GGGAAGGGAG----GAAGGCGGAGTTAACTAGAG-CTTTTTGCTCCGCCCCAGCTGTTGGGGGAAAGGGATGCAC------ACGACG---AAACGC-TTGGCGCTCTCAACTAGCCTAGACCC-TCCCG------AATCATTGAGGAAAAgagactt------------ttttcaattggcTGATGTGAA--TGTactcttcat--tcttcttttccagttt
i caeRem4.Crem_Contig24 I 691 C 0
s caePb3.Scfld02_62      410692 224 -   783054 gacaaagaaaaaacggacagaaaaactgggaaaagagaga-aaaggcgGAGTTAACTAGAG-CTTTTTGCTCCGCCCCAGCTGTT--GGGACGAGGATGCAC------AAGAGAAGTAGGCGCTTTGGCTCTCTCAACTACCCTAGGCCCTTCCCG------Aatcattga-gaaaagaaactttcccttttgtacttttcgatt------tttgaaacaatcttTTTCATTATCTTCTTTGCC--TTC
i caePb3.Scfld02_62     C 0 I 10
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I

a score=91.000000
s ce10.chrX             1179636 1 + 17718866 T
s caeRem4.Crem_Contig24  303221 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 I 42
e caePb3.Scfld02_62      410916 10 -   783054 I
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I

a score=0.000000
s ce10.chrX             1179637 624 + 17718866  
e caePb3.Scfld02_62      410916  10 -   783054 I
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I
e caeRem4.Crem_Contig24  303222  42 +  1162296 I

a score=151.000000
s ce10.chrX             1180261 3 + 17718866 AAT
s caePb3.Scfld02_62      410926 3 -   783054 AGT
i caePb3.Scfld02_62     I 10 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I
e caeRem4.Crem_Contig24  303222 42 +  1162296 I

a score=1108.000000
s ce10.chrX             1180264 44 + 17718866 TTTTTCGAATTTCTAGAACCAGAATTGGCCCGTCACTGTTCCGT
s caeRem4.Crem_Contig24  303264 44 +  1162296 TTTTTCAGATCcccaaaaaagagagaaaactgtCATCGTCACAT
i caeRem4.Crem_Contig24 I 42 C 0
s caePb3.Scfld02_62      410929 39 -   783054 TGTCTcagattctcagaaaaactgTGCTACCATCATTCT-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I
e caeSp111.Scaffold514    97623 504 -   141934 I

a score=-3243.000000
s ce10.chrX             1180308 12 + 17718866 GGTTGCTTGTCA--
s caeRem4.Crem_Contig24  303308 11 +  1162296 ---TTTGTATGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    98127 12 -   141934 -GTTTCTCGTTTC-
i caeSp111.Scaffold514  I 504 C 0
s caePb3.Scfld02_62      410968 12 -   783054 -CGTTCCGATTCC-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I
e cb4.chrX                48342 492 + 21540570 I

a score=13034.000000
s ce10.chrX             1180320 24 + 17718866 ATCAGCGAAGAGCTGTTTCGAGAT
s cb4.chrX                48834 22 + 21540570 ATCAGCG-AAAGCTGTTC-AAGAT
i cb4.chrX              I 492 C 0
s caeRem4.Crem_Contig24  303319 23 +  1162296 ATCAGCGCAGAGCTGTTT-GAGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    98139 23 -   141934 ACCAGCTCAAAGCTGTTT-GAAAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      410980 23 -   783054 ATCAGCGAAAAGCTGTTT-GAGGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   51405 1457 -   140921 I

a score=58054.000000
s ce10.chrX             1180344  99 + 17718866 AGCCGAATGATCCGGTTATCATCTGCATCTCTAATTTAATGCTGCAACCGAGGCCTCACTGGATATCCAAACTGCTCATTGCACTTTT-----TTGCTCAGCCA
s cb4.chrX                48856 104 + 21540570 AGCCGAATGGTCAGGTTATCGCCATCCTTTGCGATTTAATGCTGCAGCCGAGACCTCAACTGATATCCAGACTGCTCCAAGCATTACGATTTCTCGTTTTGGTC
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24  303342 101 +  1162296 AGCCGAATGATTAGGTTATCAATATTCTCTGTGATTTAATGCTGCAGCCGAGGCCTCATTTGATATCCAAACTGCTCATTGcatttttgattcttgttT---CC
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold514    98162 104 -   141934 AACCGAATGGTCCGGCTATCATCCTGTTTCTTGATTTAATGCTGCAGCTGAGGGCTCATTTGATATCCAAATTGCTTGCTGCATTTTCGATAATTATCCGGTTC
i caeSp111.Scaffold514  C 0 I 6
s caePb3.Scfld02_62      411003 104 -   783054 AGCCGAATGACCAGGTTATCATCACGTTTTTGGATTTAATGCTGCAGCCGAGGCCTCATTTGATATCCAAACTGCTCGTTgcatttttgataattgttCAATCA
i caePb3.Scfld02_62     C 0 I 476
s caeJap4.Scaffold17966   52862 101 -   140921 AATCCAATGTTCTATTTACCATTGTATATCTTGAATTAATGCTGTATTTGAATCCTAGCACACGATCCCAGTTG---GTTGtagttttcattttcacttgGTTA
i caeJap4.Scaffold17966 I 1457 C 0

a score=1922.000000
s ce10.chrX             1180443 33 + 17718866 ---------------ACGTGTTTGCATATTCCGAATACAGGTTTG-------AGC
s cb4.chrX                48970 40 + 21540570 ---------------TTGTTTTTGGCTACTCAGAATACGGGTTCGTGGATATTTG
i cb4.chrX              I 10 I 18
s caeRem4.Crem_Contig24  303453 33 +  1162296 ---------------CGGTTTTTGGCTATTCAGATTACAGGTGGG-------TTA
i caeRem4.Crem_Contig24 I 10 I 12
s caeSp111.Scaffold514    98272 31 -   141934 -----------------GTATTAGGGTATTCGGATTACAGGTGAG-------ATC
i caeSp111.Scaffold514  I 6 C 0
s caeJap4.Scaffold17966   52963 43 -   140921 ATTTCTTCAAGACGCTTGTATTCA--TATTCTGGCTACGAGTTTG----------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      411107 476 -   783054 I

a score=-9953.000000
s ce10.chrX             1180476 32 + 17718866 TTATT--TTTTGGTGATGCCCTACAAAAAATGTA----
s cb4.chrX                49028 30 + 21540570 TTCACAGCCTTATAggatca----aagaaaaata----
i cb4.chrX              I 18 I 33
s caeRem4.Crem_Contig24  303498 30 +  1162296 TTCTAGATCTTGGTTATTAG----GAGAGAAATG----
i caeRem4.Crem_Contig24 I 12 I 197
s caeSp111.Scaffold514    98303 26 -   141934 TTCTC---ATCACATATTCT-----AGAAGCATA----
i caeSp111.Scaffold514  C 0 I 6
s caePb3.Scfld02_62      411583 22 -   783054 TTCTC--TCTTAATCATTCC----------CATA----
i caePb3.Scfld02_62     I 476 I 4
s caeJap4.Scaffold17966   53006 31 -   140921 TTTTC---TTTGTTAAGCTA----TTGGTAAATAAGTC
i caeJap4.Scaffold17966 C 0 C 0

a score=81677.000000
s ce10.chrX             1180508 78 + 17718866 TTTCAGCTCTACCACAAAATATTGCTATAGCTGCATGTCAGAAGACTTCCTACTCCATTGGCCATATCTTGATGAGGT
s cb4.chrX                49091 78 + 21540570 TTCCAGCTCTACTACAAAATATTGTTATAGCTGTATGTCAGAAGATTTCTTATTGCACTGGCCATATCTAGATGAGGT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24  303725 78 +  1162296 ttccagctcGACTACAAAATATTGCTATAGCTGCATGTCAGAAGACTTCCTGCTACACTGGCCCTATCTTGATGAGGT
i caeRem4.Crem_Contig24 I 197 C 0
s caeSp111.Scaffold514    98335 78 -   141934 TTTGAGCACGACTACAAAGTACTGCTATAGCTGCATGTCAGAAGACTTTCTATTACACTGGCCATATCTTGATGAGGT
i caeSp111.Scaffold514  I 6 C 0
s caePb3.Scfld02_62      411609 78 -   783054 TTTCAGTTCCACTACAAAATACTGCTATAGCTGCATGTCAGAAGACTTCCTTTTGCATTGGCCCTATCTTGATGAGGT
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold17966   53037 78 -   140921 GTTTAGATTATCAACAAAGTACTGCTACAGTTGTATGTCTGAAGACTTTCTGTTGCACTGGCCCTATCTTGATGAGGT
i caeJap4.Scaffold17966 C 0 C 0

a score=2115.000000
s ce10.chrX             1180586 3 + 17718866 GAG
s cb4.chrX                49169 3 + 21540570 GAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    98413 3 -   141934 AAG
i caeSp111.Scaffold514  C 0 I 2
s caePb3.Scfld02_62      411687 3 -   783054 AAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   53115 3 -   140921 GAG
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  303803 0 +  1162296 C

a score=-155.000000
s ce10.chrX             1180589 1 + 17718866 A
s cb4.chrX                49172 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17966   53118 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 606
e caePb3.Scfld02_62      411690 0 -   783054 C
e caeSp111.Scaffold514    98416 2 -   141934 I
e caeRem4.Crem_Contig24  303803 0 +  1162296 C

a score=-788.000000
s ce10.chrX             1180590 11 + 17718866 ATTTGGTTTCT---
s cb4.chrX                49173 11 + 21540570 AAAGGGTTCTT---
i cb4.chrX              C 0 I 66
s caeSp111.Scaffold514    98418 13 -   141934 -AATCGTACTTTCT
i caeSp111.Scaffold514  I 2 C 0
e caePb3.Scfld02_62      411690  0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeRem4.Crem_Contig24  303803  0 +  1162296 C

a score=331.000000
s ce10.chrX             1180601 9 + 17718866 AGTGtaaaa
s caeSp111.Scaffold514    98431 9 -   141934 GATACAAAA
i caeSp111.Scaffold514  C 0 I 26
e caePb3.Scfld02_62      411690 0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I
e caeRem4.Crem_Contig24  303803 0 +  1162296 C

a score=0.000000
s ce10.chrX             1180610 315 + 17718866 tattaaaattaaattttaCTAAGCTGTAGTAACTGCCTGAAAAAATAACTCAATGTCATGTTCTATCACGTCAAATGGAGTTATCCTAGCGTTCAACAGTTTTCTATTACTCAACAACGTCTAAAATAAGCATTTTGGGTCTTAATGCACCATGACCAAATTTCTCAAGTGACCGAAAATTTTCCAGTACTTGGTCAAGTCGAAAATGACTGTCATTTTTATTTTATGATGCACCATGTCCGTGTTGTTCACAAAAACGAGATCGTGCAATATTTGTACTTGGCAGAGGTTCTTTAGATTCCGGTTACGTATAGA
e caePb3.Scfld02_62      411690   0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184  66 + 21540570 I
e caeSp111.Scaffold514    98440  26 -   141934 I
e caeRem4.Crem_Contig24  303803   0 +  1162296 C

a score=1342.000000
s ce10.chrX             1180925 66 + 17718866 ATATCTCATCTTTGAATTGATGCACCATGACCGTATTTT-TCAAGTGACCGAGTCACAAAAACAAAT
s caeRem4.Crem_Contig24  303803 63 +  1162296 ATGTCTCTTCTCCACAAAAACGC----TGATCTCTTTCTACCAAATGACCGGATAACATACACAAAT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      411690  0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I
e caeSp111.Scaffold514    98440 26 -   141934 I

a score=0.000000
s ce10.chrX             1180991 41 + 17718866 GCGTCTGGAACAAAAATTTATATCATAAATTGGTTACTAAA
e caePb3.Scfld02_62      411690  0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I
e caeSp111.Scaffold514    98440 26 -   141934 I
e caeRem4.Crem_Contig24  303866  0 +  1162296 C

a score=-229.000000
s ce10.chrX             1181032 41 + 17718866 CCCGCTTCCCA-AAAAATTTGTCTCATGTGATCCCGTGATGA
s caePb3.Scfld02_62      411690 38 -   783054 CGATTTTCTTATAACAATCTGT-TCATGAGGTT---TGAGTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I
e caeSp111.Scaffold514    98440 26 -   141934 I
e caeRem4.Crem_Contig24  303866  0 +  1162296 C

a score=167.000000
s ce10.chrX             1181073 25 + 17718866 CAAGAAAATTGCAGCAGCAACAGAA
s caeSp111.Scaffold514    98466 25 -   141934 CAATAAATTTGCCGCGTCTATCGAA
i caeSp111.Scaffold514  I 26 C 0
s caePb3.Scfld02_62      411728 15 -   783054 CAATCAA----------CCAACAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I
e caeRem4.Crem_Contig24  303866  0 +  1162296 C

a score=-3728.000000
s ce10.chrX             1181098 22 + 17718866 GCACAC----------CAACGGCACATAGATT-
s caeRem4.Crem_Contig24  303866  8 +  1162296 -------------------------GCACACTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    98491 33 -   141934 GAGGGCAAAAACAACATACCTTCTCATGCGTTT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      411743 23 -   783054 GAGGTC----------CACATTCTCATACGTTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49184 66 + 21540570 I

a score=14405.000000
s ce10.chrX             1181120 139 + 17718866 GCATTTGATAATGG---------------GGACAACCTGTCAGCCATTCATTATCTCACTTTTATGTGATTT---------------CCATCCGTTGGTATTTAGGATGTTTAAATGCATACCTATGGAGCAGTTAT-TTATACA-----------------CATATCCCTCCCGAGAGAGAACGAG----
s cb4.chrX                49250 144 + 21540570 GCTTTTGATAATGGG--------------CGACAACCTGTCAGTCATTCATTATATCACTTTTATGTGATGTTGTCCTCTCAAACGGCCCTCTCCGATTGGCTTGATTGTTCCAACACAAATA-----------GACTTTTTAAA-----------------CAC-----TCACGAAAAAGATAGAAAGGT
i cb4.chrX              I 66 I 49
s caeRem4.Crem_Contig24  303874 153 +  1162296 GCTCTTGATAATGGGGTGGGGTATCCGGAGGACAACCTGTCAGCCATTCATTATATCACTTTTATGTGATTCTGCCGGGGCGAG-GGCTCCCTT-----------AATGTTCCAATACATATACCTT-------GAC-TCTCAAA-----------------CACAC-TTTCACTCACGAGACAGAAGGAT
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold514    98524 155 -   141934 GC-TTTGATAATGGGGTAGAGAGCTC---GGAAAACCTGTCAGCCATTCATTATATCACTTTTATGTGATTCTGCTATTCTCTCTGGCCGTAT------------GATGTTCTGATACATATCCCTT-----CTGGC-TCACGAG-------TGGATTAATATATCT-TTT---GAGC-AAAAAGAACA--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      411766 151 -   783054 GCTTTTGATAATGAGGTATTGGA------GGACAACCTGTCAACCATTCATTATATCACTTTTATGTGATTTTGCTTGAGCCC----CCGTGT------------AATGCTC-------CATACCTT-----TCCAC-TCACGAGACTCGGTGGGGTTAATATATCT-CTTCTCTAGC--AAAAGAACG--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I

a score=0.000000
s ce10.chrX             1181259 9 + 17718866 TCCCCCTTT
e caePb3.Scfld02_62      411917 0 -   783054 C
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                49394 49 + 21540570 I
e caeSp111.Scaffold514    98679 0 -   141934 C
e caeRem4.Crem_Contig24  304027 25 +  1162296 I

a score=24101.000000
s ce10.chrX             1181268 104 + 17718866 CACAACTGTTATTGAGAGAACGAGCGCTAGGGGGTGTTGAATTTCGG-TGTGAGGTATGGGGGGAG----GGGTATCGCTAAAC----------------------CTTCTAAACGTATTAATTTTCACTT-------------------------
s cb4.chrX                49443 108 + 21540570 CACAACTGTCA-TGAGA------------AGAGGTGTTGAATTTCGGTT-TGAGA------GAAAGATGTGGGTATGACTAAATTCATG--------GATAGTAAA--CTGAAACGTATTAAttttca------------------cgtttctttt
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig24  304052 141 +  1162296 CACAACTGTCA-TGAGA------------AGAGGTGTTGAATTTCTG-T-TGAGAGGCTAGGGGGGATGTGGGTATCGCTAAATCGAGGAGAGGGGTGGTTATAGACTCTGAAACGTATTAATTTTCACTGACTGCAAGCGCTGAGcgcttctctt
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold514    98679 110 -   141934 --CAACTGTCA-TGAGA------------AGGGGTGTTGAATTTCCG-T-TGGTG----AGGGCCGCTGTGGGTATCGCTAAATCGAGGGAAAAAGGGGTTCTAGACTCTGAAACGTATTAATTTTCACTT-------------------------
i caeSp111.Scaffold514  C 0 I 149
s caePb3.Scfld02_62      411917  86 -   783054 --CAACTGTCA-TGAGAG----------GAGAGGTGTTGAATTTCTG-T--------------------TGGATATTACT-----------AAAGGAGTTTCTGGACTCTGAAACGTATTAATTTTCACCG-------------------------
i caePb3.Scfld02_62     C 0 I 10
e caeJap4.Scaffold17966   53119 606 -   140921 I

a score=-17673.000000
s ce10.chrX             1181372 117 + 17718866 ----TGCGTGCTCCTTCAAAAATTTGA--AA------ATTTCAAAATATTTTGGGAAAGAAAATAATAACGTTTTGC-------------TCTTCAAATCCACAACTCATCTTCCGAAATCC--------ACATTTTTCTGTCC----CGTGGC
s cb4.chrX                49551 126 + 21540570 ttcatcttcttttcct---agtctttt--AA------AATTTACTATAGCT-----TACCCATTTTCAACTTCCCGCGATTTTCGTTCTGTTTTTCATGTCACATCCCGACCCTAGAATTTT--------TAAGTCatatgaaa----aatggg
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig24  304193 146 +  1162296 tttcttgccTCTCCTTCAAAACCACTC--AACGCATCGAGACACTATacctttttgtatttttcttccacatttttcatttttccacatttcttcaatcttccaatccttcctcagtatttc------aAAAAGTCGCCTAACCCCTTCATGGA
i caeRem4.Crem_Contig24 C 0 I 18
s caePb3.Scfld02_62      412013  79 -   783054 ----CTCTCCCTTCTTCAAAATCTACTCGAA------AAGTCGCTAACCCAGAGAAGAA-------------------------------------------------------GGGAttgggaggaaaaaaaatcacgaacTG----------
i caePb3.Scfld02_62     I 10 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeSp111.Scaffold514    98789 149 -   141934 I

a score=21847.000000
s ce10.chrX             1181489 175 + 17718866 AATCAAATTTACATAATTTTCAT--AACAGGGAGTTTGTCGAGTTTG----------------TC---ACATGTTTTTCCCTCTTTCCCACTCCAACTTTGACCCTTCTGACACTACTAAAGCC-AGAAGAGAT-----TTCTT-----------GAAGCAAAACGA-----AAAAAATTTCTCTCCGGAAAGGGGGTCATGATATATCTTCAAGCCC
s cb4.chrX                49700 157 + 21540570 AATGAAATTTACATAA-CTTAAC--AAGCGGGGTTTTGCGAATATTG-------------AGTTT---GAATGTTTATCCAATGCCCCCAG------------------------ATAAAACTC-ataatatttcgaaattttt-----gactcaggaagaaaagca-----aaatgtttttg-------aagagGGTCATGATATATCTTCAAACTC
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig24  304357 170 +  1162296 AATCAAATTTACATAA-TTTAAC--AAGTGGGAGCTTGTGAAAAACGCG---------GAAAATT---GAATGTTTGTCACATTTTCGGGGTTA---------------------ACAAAACCCGAGaagatttgaagatttttttggGAGAGCAGAAGCACaagca-----aaacatttttc-------gaaagggTCATGATATATCTTCAGGCCC
i caeRem4.Crem_Contig24 I 18 C 0
s caeSp111.Scaffold514    98938 168 -   141934 AATTGAATTTGCATAA-TTTAAC--AAGTGGGGATATacaaaaaatgcgaaaaacaTGGAAAGTTGTTGAATGTTTGTCACATTTCTCGGG------------------------TTAACCAtc-aagaacttt-----ttttt----------tgaaaaaaaaagattcccaaaacattttt-------gagagGGTCATGATATATCTTCAGACCC
i caeSp111.Scaffold514  I 149 I 68
s caePb3.Scfld02_62      412092 152 -   783054 AATCAAATTTACATAA-TTTAACTTAACTTG---TGTGAAAAAGCTTGAAGGCAAATTGAAAACC-CAGCATGTTTGTCACAACT----------------------------------Tcgtc-cgaaatttt-----ttttt---------ccggaagatttaga-----aaaattttttc-------gaaagggtCATGATATATCTTCAGGCTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I

a score=-2663.000000
s ce10.chrX             1181664 43 + 17718866 CCCCCCCCTCATCTAACCCCATAGGACTC----------GCC-AAACAAGTATG-------------------------------------
s cb4.chrX                49857 72 + 21540570 ------------------CTATGAGACCA-GAAAAAGAGGACGAAGCTAGTGTTGTAAGGAAAAAAGAGCCAGCAAACCGAGAAATTGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  304527 63 +  1162296 ------------------CTATGAGACCA-CAAAAAGAGGGC-AAACTAGTATCT---GGGAAGAGGCG-----AGGGTGAAAATTTGCCG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      412244 52 -   783054 ------------------CTATGAGACCACGaaaaagagggc-aaactagtaaag---aggaaaaagca-----aaaca------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeSp111.Scaffold514    99106 68 -   141934 I

a score=56892.000000
s ce10.chrX             1181707 132 + 17718866 AAGATTTGGGAAA-----------------------------------------------GAGGAG----------CACA---ATGTCAAATCCTCAAAACCAGAGGCTTGGCGACGACTG----GG--G-GT-CCCTGCAATCCCTTGGAGACCGTCCGCATATATCAGAGAAGACAGCCCGATGTCGTCGACGCGAGG
s cb4.chrX                49929 189 + 21540570 AAGATTTTGAAGAGCCTTTTTTACTAGTGGTGCTGGTGCTGCTGGTGGTGGTTGTTGGTAGAGATCAAAACGCATACATACTCACG-CAAGATGTCAAAACCA-AAACTTGGCGACGACGGCGTTGG--A-GT-C----CAATCCCTTAGAGACTATCGAAA-ATAACAGAGAAGACGGCCCGATGTCGTTGACGAAAAG
i cb4.chrX              C 0 I 271
s caeRem4.Crem_Contig24  304590 146 +  1162296 AAGATTTTGAAGAGCTT-------------------------------------TTGGTAGAGGCCACAGC-----CAAA---ATG-CACAATGTCAAAACCA-AAACTTGGCGACGACGGCATCGG--GCGT-C----CAATCCCTTAGAGACCATCGGCATATATCAGAGAAGACAGCCCGATGTCGTCGAAAGAAAT
i caeRem4.Crem_Contig24 C 0 I 16
s caeSp111.Scaffold514    99174 129 -   141934 AAGATTTACAAGA-----------------------------------------------GAGGC-----------CAGA---ATG-CACAATGTCAAAACCA-AAACTTGGCGACGACGGCAGCGG--G-GT-T----CAATCCCTTAGAGACCTTCGGCATATATCAGAGAAGACAGCCCAATGTCGTCGACAAAATG
i caeSp111.Scaffold514  I 68 I 16
s caePb3.Scfld02_62      412296 142 -   783054 aaaatttgggaaagaTT-------------------------------------TTCTCCGAGGC-----------CAAA---ATG-CACAAtgtcaaaacca-aaatttggcGACGACGGCATCGGGTG-GTAC----CAATCCCTTAGAGACCATCCGAATATATCAGAAACGACAGCCCAATGTCGTCGACGAAAAG
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold17966   53119 606 -   140921 I

a score=4821.000000
s ce10.chrX             1181839 66 + 17718866 AGCTTGGA-GAAGGGGAAAAGCTTCTATTGCAACCACAAAAAA---GGGGGATCGAGAGGGGGGTAGGAG-
s caeRem4.Crem_Contig24  304752 63 +  1162296 AACCACTGCGAAGTTTGTAATTCCCTCTTGCaaccccaaaaaa---agaaga-----gagaggaagagaga
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold514    99319 61 -   141934 AGCTAGTG-GAAGTTTGTAATTCCCTTCtgcagtttttgaaaa---aaaaac-----cacgGGGGATGAG-
i caeSp111.Scaffold514  I 16 C 0
s caePb3.Scfld02_62      412443 53 -   783054 ------------GTTTGTAATTCCCTCTTGCAATcccaaaaaaaggaggaga-----aaaggGGAAAGAA-
i caePb3.Scfld02_62     I 5 I 200
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                50118 271 + 21540570 I

a score=132.000000
s ce10.chrX             1181905 24 + 17718866 GGGAGAGTCATAGAGAAACAAAGA--
s caeRem4.Crem_Contig24  304815 24 +  1162296 cagaaaaatggagggaaatgaaga--
i caeRem4.Crem_Contig24 C 0 I 268
s caeSp111.Scaffold514    99380 23 -   141934 GGGAAAACTATTG---AATGAACACA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      412496 200 -   783054 I
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                50118 271 + 21540570 I

a score=849.000000
s ce10.chrX             1181929 81 + 17718866 GGGGTATTTGGAAATTGTATTGTA-AAAGCTGAA--AGTATGGTAGAATTTTTGTAGCGAGCGGAATTAAAATTTAAAAAAACA
s caeSp111.Scaffold514    99403 77 -   141934 -------TTGAAAGTAGAACAGAGTAAAGATGagttaaaataataaaatattttgaacagccggacaaaaaatttgtcaGAACA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      412496 200 -   783054 I
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                50118 271 + 21540570 I
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=0.000000
s ce10.chrX             1182010 732 + 17718866  
e caePb3.Scfld02_62      412496 200 -   783054 I
e caeJap4.Scaffold17966   53119 606 -   140921 I
e cb4.chrX                50118 271 + 21540570 I
e caeSp111.Scaffold514    99480   0 -   141934 C
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=595.000000
s ce10.chrX             1182742 16 + 17718866 aGATCTTTTCAAACTG
s cb4.chrX                50389 16 + 21540570 AGaacctttgaaattt
i cb4.chrX              I 271 C 0
e caePb3.Scfld02_62      412496 200 -   783054 I
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeSp111.Scaffold514    99480  0 -   141934 C
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=-1108.000000
s ce10.chrX             1182758 24 + 17718866 TATTTCTAAATAAATAAAT--CGAAA------
s cb4.chrX                50405 20 + 21540570 ------ttacaaaatgaATAACGGAA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    99480 32 -   141934 TATTTCTGACactatttttaataaaattgaCA
i caeSp111.Scaffold514  C 0 I 6
e caePb3.Scfld02_62      412496 200 -   783054 I
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=-167.000000
s ce10.chrX             1182782 7 + 17718866 ATTTTCC
s cb4.chrX                50425 4 + 21540570 ---ATAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514    99518 4 -   141934 ---atat
i caeSp111.Scaffold514  I 6 C 0
s caePb3.Scfld02_62      412696 4 -   783054 ---attc
i caePb3.Scfld02_62     I 200 C 0
e caeJap4.Scaffold17966   53119 606 -   140921 I
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=-1614.000000
s ce10.chrX             1182789 3 + 17718866 AAA-
s cb4.chrX                50429 3 + 21540570 AAA-
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514    99522 3 -   141934 tta-
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      412700 3 -   783054 tta-
i caePb3.Scfld02_62     C 0 I 3
s caeJap4.Scaffold17966   53725 3 -   140921 -aat
i caeJap4.Scaffold17966 I 606 C 0
e caeRem4.Crem_Contig24  304839 268 +  1162296 I

a score=52706.000000
s ce10.chrX             1182792 62 + 17718866 TTTCAGGTGTACTATCGCCCTCTCAACTTCACCGACCATTGCTTCAAAATGACCCCATCAGT
s cb4.chrX                50433 62 + 21540570 TTTAAGGTGTACTACCGCCCTGTCAACTTCACGGACCATTGCTTCAAGATACCTCCTTCGGT
i cb4.chrX              I 1 I 4
s caeRem4.Crem_Contig24  305107 62 +  1162296 tttcaggtgTACTACCGCCCTATCAACTTCACTGACCACTGCTTCAAAATACCCCCCTCGGT
i caeRem4.Crem_Contig24 I 268 I 24
s caeSp111.Scaffold514    99526 59 -   141934 tttcaggtgTACTATCGTCCTATAAATTTTACCGACCACTGCTTCAAAATA---CCATCGAC
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62      412706 62 -   783054 tttcaggtGTATTATCGTCCCATCAACTTTACTGACCACTGCTTCAAAATACCCCCATCGGT
i caePb3.Scfld02_62     I 3 I 21
s caeJap4.Scaffold17966   53728 62 -   140921 ttccAGGTTTACTATAGGCCAACCAATTTCACGGACCACTGCTatgaaatatcaaaaaaagt
i caeJap4.Scaffold17966 C 0 C 0

a score=58.000000
s ce10.chrX             1182854 2 + 17718866 AA
s caeSp111.Scaffold514    99585 2 -   141934 GG
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   53790 2 -   140921 aa
i caeJap4.Scaffold17966 C 0 I 3
e caePb3.Scfld02_62      412768 21 -   783054 I
e cb4.chrX                50495 4 + 21540570 I
e caeRem4.Crem_Contig24  305169 24 +  1162296 I

a score=-2703.000000
s ce10.chrX             1182856 13 + 17718866 -----------TGGAACTTTAAAA
s cb4.chrX                50499 11 + 21540570 -----------TTGCATTACGA--
i cb4.chrX              I 4 I 3
s caeSp111.Scaffold514    99587 13 -   141934 -----------TTTGTTTTTGACA
i caeSp111.Scaffold514  C 0 I 16
s caeJap4.Scaffold17966   53795 22 -   140921 TGGGGCTATTATgctaatttaa--
i caeJap4.Scaffold17966 I 3 C 0
e caePb3.Scfld02_62      412768 21 -   783054 I
e caeRem4.Crem_Contig24  305169 24 +  1162296 I

a score=-2100.000000
s ce10.chrX             1182869 13 + 17718866 AATCAATAACTTA
s cb4.chrX                50513  5 + 21540570 CCTTG--------
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold514    99616 13 -   141934 ACTTGAAAGGTTA
i caeSp111.Scaffold514  I 16 C 0
s caePb3.Scfld02_62      412789 13 -   783054 Cattcaaaactca
i caePb3.Scfld02_62     I 21 C 0
s caeJap4.Scaffold17966   53817  9 -   140921 aattaaaaa----
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  305169 24 +  1162296 I

a score=67407.000000
s ce10.chrX             1182882  88 + 17718866 TACA---ATTA----------TTGC--AGGCAAATATTGGAACAATGCCTTGCAGTCATTCGATGTGTGTGACCGTCATTGAGCCGAGAATTTTAGCAGGTAA
s cb4.chrX                50518 101 + 21540570 TATGTTTTTGATCAACTACATTTTC--AGGCAAACATTGGAACTATGGCTTGTAGTAATTCAAAGTGCGTGACAGTTATAGAACCAAGAATCCTTGCAGGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  305193  93 +  1162296 Cacaatttcaa--------actttc--aggCAAACATTGGAACGATGCCTTGCAGTCACTCAATGTGTGTGACAGTTATAGAGCCGAGAATTCTGGCAGGTAA
i caeRem4.Crem_Contig24 I 24 I 7
s caeSp111.Scaffold514    99629  84 -   141934 -------CTTA----------TTTC--AGGCAAACATTGGGACAATGCCTTGCAGTCACTCAATGTGTGTAACTGTAATAGAACCACGAATTCTGGCAggtaa
i caeSp111.Scaffold514  C 0 I 5
s caePb3.Scfld02_62      412802  86 -   783054 -------ttca----------tttcttaGGCAAATATTGGAACAATGCCCTGCAGTCACTCAATGTGTGTCACTGTTATCGAACCTCGAATTCTGGCAggtaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   53826  87 -   140921 --------------acaaatgtttt--agACAGATATTGGAACAGTTCCTTGCAGTCATTCGATGTGTGTGACAGTTGTTGAGCCTAAAATTCTTGCCGGTAA
i caeJap4.Scaffold17966 C 0 C 0

a score=247.000000
s ce10.chrX             1182970 2 + 17718866 AT
s cb4.chrX                50619 2 + 21540570 gt
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_62      412888 2 -   783054 ac
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   53913 2 -   140921 GT
i caeJap4.Scaffold17966 C 0 I 550
e caeSp111.Scaffold514    99713 5 -   141934 I
e caeRem4.Crem_Contig24  305286 7 +  1162296 I

a score=333.000000
s ce10.chrX             1182972 5 + 17718866 TTATT
s caePb3.Scfld02_62      412890 5 -   783054 tcatt
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50621 1 + 21540570 I
e caeSp111.Scaffold514    99713 5 -   141934 I
e caeRem4.Crem_Contig24  305286 7 +  1162296 I

a score=0.000000
s ce10.chrX             1182977 276 + 17718866 GGCTTCGAAAAAATTTGAAATTTTGAAAATGTTAGAAAAATATTCACTAAAACTTAAAAGTTTTGCAAAAGATAAGAATCGCAAAATTCAGGTTTAGAAAATTGAAAAAAAAACAGATTAAAAAAAATAATTGTATGTATATTTTCAGCTAGTTTTCAAATCTACCTTTATTTCATTTTAAAATGGCCCCGTTTTCATTTTTGCGGTCATTTCTATGATAAAATTTATTTTCTGAGCCGTTCAGTTCAAAAATGTCTCCAACTATTTTCCAACTTC
e caePb3.Scfld02_62      412895   2 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50621   1 + 21540570 I
e caeSp111.Scaffold514    99713   5 -   141934 I
e caeRem4.Crem_Contig24  305286   7 +  1162296 I

a score=377.000000
s ce10.chrX             1183253 21 + 17718866 CTCCTCATTCATTCATTCCCA
s cb4.chrX                50622 21 + 21540570 ctcttctttttcttcctctct
i cb4.chrX              I 1 C 0
e caePb3.Scfld02_62      412895  2 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e caeSp111.Scaffold514    99713  5 -   141934 I
e caeRem4.Crem_Contig24  305286  7 +  1162296 I

a score=51128.000000
s ce10.chrX             1183274 157 + 17718866 TTTCCTAATCCCATTCATCAATAACAACAGC-------------TCTGGGGTACCCAGGTGTATCCTATCCATCA-----GGGACGGC-----CGAGGGGAGGGGTGG------------------------------G---------AGAGGGAAAGAGTCGAAAAAAGTGCGGTAAACGAG-AAGGTGTCTCATTGAAAATGATGGATCTGTTACAAT
s cb4.chrX                50643 191 + 21540570 aTTTTCACTATCAATCATCAATAACAAACGC--ACCCCA-----CCTCAA-------CGTGTATTCTATCTCTCTAAGA-TATAGGGA-----GAAAGGGAGACGGGGTGACAAAAAGCAGATGGCTAGATCTCGGGGG---------GTTGACAACGGGAACGAAAAAATGCGGTAAATGAGAAAGGCGCCTCATTGAAGATGATCGATTTGTTACAAT
i cb4.chrX              C 0 I 183
s caeRem4.Crem_Contig24  305293 185 +  1162296 TTTTTTACTATCAATCATCAATAACAACAGCtactcccatttttcttcaa-------ggTGTATCCTATCCGTCAGGAC-ggagggga-----gaaaaagaaaagggg---caaaaagcaaatgggtaga--------g---------gaagagaa--ggacggaaaaagTGCGGTAAATGAGAAAGGTGTCTCATTGAAAATGATCGATCTGTTACAAC
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold514    99718 187 -   141934 tttttcactatCAATCACTAACAACAGCAGC-------------TTTAGA-------GGTGAATGCTATCTGTCACCTC-TTTAGAGATTTTTGGAGGGTAAAAAGAG---TAGAGGAGTGAGTGTTTGT--------GTGTGAgcgagagaaaaataagttgtGAAAAGTGCGGTAAATGAG-AAGGTGtctcattgaaaatgatggatcTATTACAAT
i caeSp111.Scaffold514  I 5 C 0
s caePb3.Scfld02_62      412897 176 -   783054 ttcactacTATCAATCATCAATAACAACAGC-------------TTTCGAG------GGTGTATCCTGTCCGTCAACTCATTGAGAAA-----AGGGGGTAAAAAGCA---GATTGAAGAGGGGGTTTGA--------G---------GAAACGGGGAGGACGCAAAAAGTGCGGTAAATGAGAAAGGTgtctcattgaaaatgatggatCTGTTACAAT
i caePb3.Scfld02_62     I 2 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I

a score=3293.000000
s ce10.chrX             1183431 40 + 17718866 AAACCACTTA---TCTTTCACATTCCTTTCACTTGATTGTGAT------
s caeRem4.Crem_Contig24  305478 36 +  1162296 GTTCCACTTA---TC--------Cactt--atttcattttgattgtGAT
i caeRem4.Crem_Contig24 C 0 I 232
s caeSp111.Scaffold514    99905 35 -   141934 GTTTCACTTATTTTC--------CCCTTTGATTTCATTGTGAT------
i caeSp111.Scaffold514  C 0 I 580
s caePb3.Scfld02_62      413073 32 -   783054 TTTCCACTTA---TC--------CCCTCCCATTTTATCGCAAT------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50834 183 + 21540570 I

a score=475.000000
s ce10.chrX             1183471 24 + 17718866 GATTAAAAATGTTGCGTTTTTAAT
s caePb3.Scfld02_62      413105 18 -   783054 ------AAATCTCGATTTTTCGAT
i caePb3.Scfld02_62     C 0 I 189
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50834 183 + 21540570 I
e caeSp111.Scaffold514    99940 580 -   141934 I
e caeRem4.Crem_Contig24  305514 232 +  1162296 I

a score=0.000000
s ce10.chrX             1183495 553 + 17718866  
e caePb3.Scfld02_62      413123 189 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50834 183 + 21540570 I
e caeSp111.Scaffold514    99940 580 -   141934 I
e caeRem4.Crem_Contig24  305514 232 +  1162296 I

a score=1113.000000
s ce10.chrX             1184048 48 + 17718866 GCGTCGAATGACCTCCAACTGCCCTTGTGTGTCGCAATGTAGTTATGC
s caePb3.Scfld02_62      413312 48 -   783054 GTGCAGAACGATCTCAATGTACCCTGAAGTTAAGGAATGTAATTTTTC
i caePb3.Scfld02_62     I 189 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                50834 183 + 21540570 I
e caeSp111.Scaffold514    99940 580 -   141934 I
e caeRem4.Crem_Contig24  305514 232 +  1162296 I

a score=8678.000000
s ce10.chrX             1184096 41 + 17718866 -------TCAATTGCGACTTGTTCACTTATTCTAACTCACTGTGCGTC-------------------
s cb4.chrX                51017 57 + 21540570 -------TCAATTATCACTTGTTCAATTATTCTTAGTCGC---ACACACTCACACCATCTGCTCTTT
i cb4.chrX              I 183 C 0
s caeRem4.Crem_Contig24  305746 33 +  1162296 -------TCAATTGTCACTTGTTCACTTATTCTGAgtcac---------------------------
i caeRem4.Crem_Contig24 I 232 C 0
s caePb3.Scfld02_62      413360 45 -   783054 TTACACGTCGATTGTCACTTGTTCACTTATTCTGAGTCAC---ACACC-------------------
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17966   53915 550 -   140921 I
e caeSp111.Scaffold514    99940 580 -   141934 I

a score=30515.000000
s ce10.chrX             1184137  93 + 17718866 CTCCTCTCTCTC------TCTGCTGCTCCCCC-------CAATTATCTAATCTAATCCTCCTTCCGTTTCG--TGTACA-----------------------GAGC--AAGATTTCATGGAATAAAATATTCT--
s cb4.chrX                51074 118 + 21540570 TTCTTGTCTTCC------TTC-----TTCCCCAGTTCTTCAATTATCTAATCCAgtcct-tttctttttcgacaGCAAAGAAGCGGGAAAATGGAGAAAGCAAAAG--A-GATTTCATGGAATAAAATATTCT--
i cb4.chrX              C 0 I 946
s caeRem4.Crem_Contig24  305779 101 +  1162296 -----gtcttct------ttt-----tccccc-------CAATTATCTAATCTAATCCT-CTTCCTTTTCG--TGCACAGAAAAGGga----ggaaaaaggggaag--aCGATTTCATGGAATAAAATATTCT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   100520 111 -   141934 --cttttctccctcccagctt-----cctccc-------cAATTATCGAATCTAATCCT-CTTTCT----G--TGTACAGCAAATGAGAAtcagaaatagaagagaacAAGATGTCATGGAATAAAATATGT---
i caeSp111.Scaffold514  I 580 C 0
s caePb3.Scfld02_62      413416 104 -   783054 --cttttctccc------ccT-----TCTCTC-------CAATTATCTAATCTAATCCT-CTTCCTTTTCG--TGTACA------GAAAAGCAAAAAGGGAGGAAA--AAGATTTCatggaataaaatatttctt
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I

a score=4582.000000
s ce10.chrX             1184230 21 + 17718866 TGTGGTGCTCC-AAGATTAGTT
s caeRem4.Crem_Contig24  305880 18 +  1162296 ---CCTCTGCC-AAGATTAGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   100631 19 -   141934 --TTCTCTGCC-AAGCTTAGTT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      413520 22 -   783054 tcttctctgccAAAGATTAGTT
i caePb3.Scfld02_62     C 0 I 169
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I

a score=745.000000
s ce10.chrX             1184251 4 + 17718866 GTGC
s caeRem4.Crem_Contig24  305898 4 +  1162296 GTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   100650 4 -   141934 TTGC
i caeSp111.Scaffold514  C 0 I 429
e caePb3.Scfld02_62      413542 169 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I

a score=-1488.000000
s ce10.chrX             1184255 120 + 17718866 TCTCTTTTCTGCACAC--------------------TGCC-------------GCGCTAGTTCATTTTTC----------------GGGATTTT---TTTCCTGTTGGAACTGGGAGGCCTGTG-----------------------------AGGAAGCAATTGGTCTAATAATATTAT-------------GCAAGGGAGACAGGGAGAACA
s caeRem4.Crem_Contig24  305902 214 +  1162296 ACTGCCTACAACACTCACAAGAAATGGCAACATCCTTGCCAAATCATGTCCCAgctttgttccattttttcgcaTTCCATTGGCTGgggattttgattttatttttcgaaccaCCGGGGATGTGGAACAACGCCTCCGGGCCGCAGAAAAACGAAGAGGGAGTGTAACGAATAACACTATTATTTCCACGGGGGAGAGGAAGAGAGGAACGATG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      413542 169 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I

a score=8089.000000
s ce10.chrX             1184375 41 + 17718866 GCATCTGTTAATCAAATTACAACTTGATTGCGATTGAGTTA
s caeRem4.Crem_Contig24  306116 41 +  1162296 GCATCTGTTAACCTAATTAGAACTTGATTGGGATTGAGTTA
i caeRem4.Crem_Contig24 C 0 I 1087
s caePb3.Scfld02_62      413711 41 -   783054 GCATCTGCTAACCTAATTAGAACAGAAATGAGATTGAGTTA
i caePb3.Scfld02_62     I 169 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I

a score=456.000000
s ce10.chrX             1184416 17 + 17718866 GAGTTTGTTGACTCTTT
s caePb3.Scfld02_62      413752 12 -   783054 ----TTG-TGACTCTCT
i caePb3.Scfld02_62     C 0 I 256
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=0.000000
s ce10.chrX             1184433 1140 + 17718866  
e caePb3.Scfld02_62      413764  256 -   783054 I
e caeJap4.Scaffold17966   53915  550 -   140921 I
e cb4.chrX                51192  946 + 21540570 I
e caeSp111.Scaffold514   100654  429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=9109.000000
s ce10.chrX             1185573 211 + 17718866 CTCCTGAACAACTTTGATTGGTTTTTTTGTTGAGTGTGTGTGCATGTGCACATCACAAA----ATAAAAGCATAAAAAGAGGAGACAAGAAGGAGTGCGCGCGAGAAAACG-------AGAGGTAATCGCATTGAAAATGGAATTTGAGTGGAAAAAGAGGGGGGGACAAATGAAAGTACATCATTTTGATGATGCAAACATGTCCTCACTATTCAACTAAA
s caePb3.Scfld02_62      414020 210 -   783054 Ctcctgaa-aactttgattggtttttt----gagtgcGTGTGTGTGTGCCGCACAAAAATGGcatgaaagtaaaaaaaagaggagcaGGACGAAA-----ACGATGAAGTGTTGTCGAAGAGGTAATCgcattgaaaatggaatttgagTGGAAAAAGAGGGGAAAGGGAATGAAAGTACATCATTTCAATGATG--GAGATGTCCTCAGAGCTCATTCAAA
i caePb3.Scfld02_62     I 256 I 25
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=0.000000
s ce10.chrX             1185784 978 + 17718866  
e caePb3.Scfld02_62      414230  25 -   783054 I
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=559.000000
s ce10.chrX             1186762 15 + 17718866 TAAAATGAACATCTA
s caePb3.Scfld02_62      414255 15 -   783054 TAGAGCAAACACCAA
i caePb3.Scfld02_62     I 25 C 0
e caeJap4.Scaffold17966   53915 550 -   140921 I
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=642.000000
s ce10.chrX             1186777 19 + 17718866 TTTTTAAAATTAATTTCCC
s caePb3.Scfld02_62      414270 12 -   783054 TTTTTAACTTTA-------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   54465 19 -   140921 tttttaatatttacaTATC
i caeJap4.Scaffold17966 I 550 C 0
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=-32.000000
s ce10.chrX             1186796 2 + 17718866 AA
s caeJap4.Scaffold17966   54484 2 -   140921 TA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      414282 0 -   783054 C
e cb4.chrX                51192 946 + 21540570 I
e caeSp111.Scaffold514   100654 429 -   141934 I
e caeRem4.Crem_Contig24  306157 1087 +  1162296 I

a score=910.000000
s ce10.chrX             1186798 1 + 17718866 T
s cb4.chrX                52138 1 + 21540570 t
i cb4.chrX              I 946 C 0
s caeRem4.Crem_Contig24  307244 1 +  1162296 T
i caeRem4.Crem_Contig24 I 1087 C 0
s caePb3.Scfld02_62      414282 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   54486 1 -   140921 T
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   100654 429 -   141934 I

a score=84948.000000
s ce10.chrX             1186799 102 + 17718866 TCCAGGTCAACACATTGGAAACAATATAATACGTGGTTGCTTTTCCGGTGTTTTCAAATATGGATCAACGCCGAAATCTCAAAGTCAACAAGTTTTAGGTAA
s cb4.chrX                52139  99 + 21540570 taCAGGTCAACACATTGGGAACAACATCATTCGCGGATGTTTCTCTGGAGTGTTCAAGTATGGATCTACACCAAAATCACAAGCTCAGCAAGTTTTAGG---
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  307245 102 +  1162296 TTCAGGTCAACACATCGGTAACAATATTATACGTGGATGCTTTTCTGGTGTCTTCAAATATGGATCGACACCAAAATCACAGAGTCAGCAGGTGCTAGGTgg
i caeRem4.Crem_Contig24 C 0 I 13
s caeSp111.Scaffold514   101083 102 -   141934 TTCAGGTCAGCACATTGGAAACAATATTATACGTGGTTGCTTTTCGGGTGTCTTTAAGTACGGATCGACTCCAAGAACACAAAGTCAGCAAGTACTAGGTAA
i caeSp111.Scaffold514  I 429 I 203
s caePb3.Scfld02_62      414283 102 -   783054 TTCAGGTCAGCACATTGGAAACAATATAATACGTGGTTGTTTTTCCGGTGTTTTCAAATATGGAACAACTCCAAAATCGCAAAGTCAGCAAGTACTGGgtaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   54487  99 -   140921 ---AGGTCAGCACATTGGGAATAACATTATTCGAGGATGTCTCTCTGGAGTTTTTAAGTATGTTTCAACACTTAAACTGCAGCCAATGCCGGTTTTAGGTGA
i caeJap4.Scaffold17966 C 0 I 40

a score=642.000000
s ce10.chrX             1186901 18 + 17718866 TGTCTTTCAATTTATAAA
s cb4.chrX                52240 18 + 21540570 tgtatttcaaaataaaaa
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  307360 14 +  1162296 ggtacttta----aaaaa
i caeRem4.Crem_Contig24 I 13 C 0
s caePb3.Scfld02_62      414385 18 -   783054 gatttttgagattctcaa
i caePb3.Scfld02_62     C 0 I 1101
e caeJap4.Scaffold17966   54586 40 -   140921 I
e caeSp111.Scaffold514   101185 203 -   141934 I

a score=-28352.000000
s ce10.chrX             1186919 229 + 17718866  
s cb4.chrX                52258 420 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  307374 470 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      414403 1101 -   783054 I
e caeJap4.Scaffold17966   54586  40 -   140921 I
e caeSp111.Scaffold514   101185 203 -   141934 I

a score=-96.000000
s ce10.chrX             1187148 1 + 17718866 T
s cb4.chrX                52678 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  307844 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   54626 1 -   140921 T
i caeJap4.Scaffold17966 I 40 C 0
e caePb3.Scfld02_62      414403 1101 -   783054 I
e caeSp111.Scaffold514   101185 203 -   141934 I

a score=1820.000000
s ce10.chrX             1187149 2 + 17718866 TT
s cb4.chrX                52679 2 + 21540570 tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  307845 2 +  1162296 TT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      415504 2 -   783054 TT
i caePb3.Scfld02_62     I 1101 C 0
s caeJap4.Scaffold17966   54627 2 -   140921 TT
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   101185 203 -   141934 I

a score=125586.000000
s ce10.chrX             1187151 146 + 17718866 TCAGATACCTCATGTAGTCGAATGCCTGCACATAAATTATTACCACCCCGGCTGGCAGCAAGGAGCAGCAATCGAACAGTCGAACTGTGCTGGTGTGCTGGACAGCTGTGTAATTATTATCCCAGTGTTGCAATTAATCATAGGTA
s cb4.chrX                52681 146 + 21540570 tcagaaacttcgtgTACGCGAATGCCAGCTCACAAACTATTGCCACCACGTCTAGCAGCGCGAAGTAGCAATAGAACTGTTGAATTATGTTGGTGTGCTGGGCAACTGTGCAATTACTATCCGAGTGTTGCTATTAACAAAAGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  307847 146 +  1162296 CCAGATACATCGTGCACACGGATGCCGGCTCACAAACTCCTCCCACCACGACTAGCAGCCAGGAGTAGTAATAGGACAGTTGAATTATGTTGGTGTGCCGGTCAACTATGCAACTACTACCCAAGTGTTGCAATCAACCATAGGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   101388 146 -   141934 CCAGACACATCATGTACACGAATGCCAGCTCATAAACTTCTACCGCCTCGGTTAGCGGCCCGAAGCAGCAATCGAACAGTAGAGCTTTGTTGGTGCGCTGGTCAACTATGTAACTACTATCCCAGTGTTGCTATCAACCACAAGTA
i caeSp111.Scaffold514  I 203 I 24
s caePb3.Scfld02_62      415506 146 -   783054 ACAGACACGTCTTGCACACGGATGCCAGCTCACAAACTACTACCGCCCCGGTTAGCAGCACGAAGTAGCAATAGAACAGTTGAACTGTGTTGGTGTGCCGGACAACTTTGCAATTATTACCCAAGCGTGGCGATTAACCACAGGTt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   54629 146 -   140921 ACAGAAAACTCATGTACTCGAATGCCGGCTCATAAACTTCTGCCAAACAGGTTTGCGTCAAGAAGTAGCAATAGAACTATAGAACTTTGTTGGTGTGCTGGTCAACTTTGTAATTATTATCCTAGTGTGGCCGTAAACAAAAGGTG
i caeJap4.Scaffold17966 C 0 C 0

a score=-2442.000000
s ce10.chrX             1187297 11 + 17718866 A--CGTTTT-TTAT
s cb4.chrX                52827 10 + 21540570 ---AGTTTT-TCGT
i cb4.chrX              C 0 I 406
s caeRem4.Crem_Contig24  307993 11 +  1162296 ---TGTTTTATTAT
i caeRem4.Crem_Contig24 C 0 I 33
s caePb3.Scfld02_62      415652 12 -   783054 agttgattt-tct-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   54775  9 -   140921 AGCTGTTGT-----
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   101534 24 -   141934 I

a score=694.000000
s ce10.chrX             1187308 10 + 17718866 GCGGAAAATG
s caeJap4.Scaffold17966   54784  9 -   140921 -TGGAAAATG
i caeJap4.Scaffold17966 C 0 I 629
e caePb3.Scfld02_62      415664  0 -   783054 C
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   101534 24 -   141934 I
e caeRem4.Crem_Contig24  308004 33 +  1162296 I

a score=1123.000000
s ce10.chrX             1187318 50 + 17718866 AAAAATGGAAAAAAAAAGTTGGA-TTATTTTATATTGCAATTGAAAAATTG
s caePb3.Scfld02_62      415664 44 -   783054 -------gaaaaaagtagttcaattttttttttgcagcacttcaaaaaatg
i caePb3.Scfld02_62     C 0 I 1454
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   101534 24 -   141934 I
e caeRem4.Crem_Contig24  308004 33 +  1162296 I

a score=0.000000
s ce10.chrX             1187368 264 + 17718866 AACTTTATCGAAATTTTAAATTTTTTCGGTCaaaaattttaataaaaactaataaactagaatataaaatttagaatgttatcttgaaacttttttataaaaaataattaCTTACTGCAAAGGTTTCGAGTAAAAATTTGTTTAACAATTTGGTCAGTGCAAATTTCCTATTTGTGTCAAAGTGTTCAGTGTAAATTTCCAACTTGTGAAAAACTTTAGAAACATTGCAAAGATATAAAATCAAGAAATGTTGTTAAAATACAA
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   101534  24 -   141934 I
e caeRem4.Crem_Contig24  308004  33 +  1162296 I

a score=503.000000
s ce10.chrX             1187632 16 + 17718866 AAAAAAACCGTTATTT
s caeSp111.Scaffold514   101558 16 -   141934 aacaaATGCGACATTT
i caeSp111.Scaffold514  I 24 C 0
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  308004 33 +  1162296 I

a score=7442.000000
s ce10.chrX             1187648 77 + 17718866 -TTTCAGTACTTCCCTCCACGTGATAGCTGCACTTCCAATCTTCCTGGTTCTCATACTGTGCTCA----TTTTGGAGTTGAA--
s caeRem4.Crem_Contig24  308037 81 +  1162296 -TTTCAGCGCTTCGACAAATGTGATAGCTTCATTATTCATTTTCCTGGTTCTGGTGATATTCAcgacatttttgtagtggaa--
i caeRem4.Crem_Contig24 I 33 I 1328
s caeSp111.Scaffold514   101574 80 -   141934 TTTGCAGCACTTCGGTAAATGTGATAACTTCACTTTTAGCTCTCATTGTTTCGGTGATACTCTCG----TTTTGGAGTGGTGAA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I

a score=982.000000
s ce10.chrX             1187725 221 + 17718866 ACGCGCGCTGAAATCTCATTCACAAACGTCTAACAAAAATCCTGGAGTCTTTGAAAAAGG--GTCTTTCTTTGATATTTTTTGT-----AATTTCCTTCCTTTCCAACTTCTTATTCCCAAGAGAAAACCGTACACTTGAGAGCTTTTCTTACCAAATGATTGATCTCTATTTTTATCTTG---------TCTTATGTTTTTTTGA----AGAGttttttttttgaaaa-taattttgataa
s caeSp111.Scaffold514   101654 209 -   141934 ACATGTATATGAAACTC-------------------aagttctgaaattgtttccAATGGTCGTTCCACTTTAATTTCCTTTgtatttaaaattgttttatttataaa--ataaCTCCCGAAAAGAAAT----CACATGAGAGCTTTTT--------CGGTTAATTCTGCTTAGGATTTTGTACTTCCGTTATTATGTCTGTTTGATCTCAAATTGCagtctttgaaaattcatctTAATAA
i caeSp111.Scaffold514  C 0 I 31
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  308118 1328 +  1162296 I

a score=0.000000
s ce10.chrX             1187946 606 + 17718866  
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   101863  31 -   141934 I
e caeRem4.Crem_Contig24  308118 1328 +  1162296 I

a score=538.000000
s ce10.chrX             1188552 21 + 17718866 TTGATTTTTCCAAGTAGAGGT
s caeSp111.Scaffold514   101894 21 -   141934 ttgtttttgtcAAGTAACTTC
i caeSp111.Scaffold514  I 31 C 0
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  308118 1328 +  1162296 I

a score=2867.000000
s ce10.chrX             1188573 27 + 17718866 TTGAGAACTTTGATCTGATCATTTGTC
s caeRem4.Crem_Contig24  309446 27 +  1162296 TTTAGAATTTTCATCTGCGCTTCAGTG
i caeRem4.Crem_Contig24 I 1328 C 0
s caeSp111.Scaffold514   101915 27 -   141934 TTGAGAAGCTTCATGTGAACTTCGGTG
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      415708 1454 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I

a score=14982.000000
s ce10.chrX             1188600 44 + 17718866 ACTCCACAACATCCTCCGATTGCTGTAACGCCTTTTTCAATCCA
s caeRem4.Crem_Contig24  309473 44 +  1162296 ACTCCACAGCAACCACCAATTGCAGTCGCGCCATTTTCCACCCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   101942 44 -   141934 GTTCCACAGCAACCTCCAATAGCAGTCGCACCATTCTCAACCCA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417162 44 -   783054 ATTCCACAACAGCCTCCAAGTGCAGTTGCACCATGCTCTATCCA
i caePb3.Scfld02_62     I 1454 I 121
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I

a score=2208.000000
s ce10.chrX             1188644 50 + 17718866 TGATGTAACCAATGTTTTAGTGAACACATTACTCTCGTCGATTCTGCAAA
s caeRem4.Crem_Contig24  309517 50 +  1162296 TCCGGTGACCATGTCTATATTAAAAACGTCGGATTCgtctgatctgaaaa
i caeRem4.Crem_Contig24 C 0 I 474
s caeSp111.Scaffold514   101986 49 -   141934 ACTGGACACTAAACCTTGATTGAAGACGTTGGTGTCATCTGTTCtgcaa-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      417206 121 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I

a score=476.000000
s ce10.chrX             1188694 23 + 17718866 ACGTTTTTT------TCAACGGAATCAAT
s caeSp111.Scaffold514   102035 25 -   141934 ----tttttaaaaagtcagcaaaataaat
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      417206 121 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  309567 474 +  1162296 I

a score=0.000000
s ce10.chrX             1188717 698 + 17718866  
e caePb3.Scfld02_62      417206 121 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   102060   0 -   141934 C
e caeRem4.Crem_Contig24  309567 474 +  1162296 I

a score=554.000000
s ce10.chrX             1189415 31 + 17718866 AAAATTTTGTGTAA----AGATTATTTTTCAAACG
s caeSp111.Scaffold514   102060 35 -   141934 aaaattgagTATAATaccacatttttctttattca
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      417206 121 -   783054 I
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  309567 474 +  1162296 I

a score=1513.000000
s ce10.chrX             1189446 10 + 17718866 AAAAAAAAAA
s caeSp111.Scaffold514   102095  7 -   141934 ---aaaaaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417327  9 -   783054 -aaaaaaaaa
i caePb3.Scfld02_62     I 121 C 0
e caeJap4.Scaffold17966   54793 629 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  309567 474 +  1162296 I

a score=67.000000
s ce10.chrX             1189456 1 + 17718866 T
s caeSp111.Scaffold514   102102 1 -   141934 c
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417336 1 -   783054 c
i caePb3.Scfld02_62     C 0 I 3
s caeJap4.Scaffold17966   55422 1 -   140921 T
i caeJap4.Scaffold17966 I 629 C 0
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  309567 474 +  1162296 I

a score=40855.000000
s ce10.chrX             1189457 258 + 17718866 ACTCACCCTTCTTCTAAAAACTTGGAATCCCCCTTGTTCGGATACACAAACACTTCGGAAAACGCGAAAGGCTGTAATTCATTTAAGGCGGGCAATACGTTGTTAGGGTCCGTGCAATTAATTCCTATTCCCAAGACTTGAGGGCTT------------------------------------------------TGTTTCATCTGCTGAGCGACGGAGGTTATTTTCTCTCCATGTCGTAGGCATCCGTGCTCCTGGAAGTTCATAAAGATTTTTCATTCGATTTT---AAATATCAATGACTTTCAC
s caeRem4.Crem_Contig24  310041 251 +  1162296 acatacccttcattcaaaaattttgaatcaccCATGTTCGGATACACGAATACTTCCGgaaagttgtgttttttgatCACCTTCAATGCCGGTAGCACATTTTCCGGATCGGTGCAGTTGATTCCCATCCCAACAATTTGACTACAT------------------------------------------------TTTCTCAGTTCTCCAGCAAGAGTGTCAATTTCTTCTCCATGCCGCAAACAGGCATTTTCcta----------gaaattttttctcagtttttggaaaataatcaTGATTTTCTC
i caeRem4.Crem_Contig24 I 474 C 0
s caeSp111.Scaffold514   102103 248 -   141934 -cttactcttttttcaaaaactttgagtCTCCTATGTTGGGATAAACAAAGATTTCCGGAAACTTGTATTTTCTCAGCTCTGATAAAACCGGCATTACGTTTTCAGGGTCTGTGCAGTTTATACCGACTCCAATAGTTTGAGGGCAT------------------------------------------------CGCTTTATCTCTTCAGCAATGTTGTGGATAGCATCGCCATGACGCAAACATGCGTTCTCCTGTAA-TATAAAGAACCATCCTACAAGATATTCGAAACTAGTA-----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417340 209 -   783054 acttacTCAGCTACCATGAAGAACGCGTCTCCAAGATTGGGATACACGAAAATATCTGAGAATTCACAGTTCTTGATTGCTTCCAAAACAGGCAAGACATTTTTAGGATCCGTGCAGTTAATACCCATTCCAATAATTTGTTCGCtt------------------------------------------------tctttcaacttcttcgCGATGTCGGCAACATGTTCTCCATGCCGCAGACAAGCGTTTTcctt----------------------------------------------------
i caePb3.Scfld02_62     I 3 C 0
s caeJap4.Scaffold17966   55423 271 -   140921 ACTTACTCGTTGTCTAAAAAGGTGGCATCTCCAACATTTGGGTAAACGAATATTTCTTGAAAATTACAGTGCCGTATTTCAAGAAGAGCAGCAGTGATGTTGGATGGGTCAGTACAGTTGACACCGATTCCCACTATCTGGATATTtaatatttaatatttttatagATGTTGAATTATACAGACCtgtttattattttcaagCTCCTTTGCAACATTCGTTATCTTTTCTCCATGGCGAAGGCAACCATTCTTCTGAAA----------------TCAACGATTTT----------------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                52837 406 + 21540570 I

a score=-17839.000000
s ce10.chrX             1189715 121 + 17718866 TCTAGTTATGTCAATTTATTTGCAAGATTTCACCAAATTTTCAAGTACAGAAATTTGCTTGATGACAATTTTTCAACA-AAATAGAA-CATTTCTAGAAGCGGGTAATTATTTTATT------TGAAC-T
s caeSp111.Scaffold514   102351  69 -   141934 -----------GAAACTGTT-----------------TTATTAA-------------CTCAAAGTCA---TATCTACATATACAGTgacatt--------------tttgtttcgtgTTC---AGAACTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417549  52 -   783054 -----------aaaattgtt-----------------tttt-----------------------------tttctgcacagACAACT-CATC--------------ATGTTTTTACG------AAGACAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   55694  23 -   140921 -----------------------------------------------------------------------------------------------------------TTGGCTCATGACCATAGAAACCT
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  310292   0 +  1162296 C

a score=45835.000000
s ce10.chrX             1189836 195 + 17718866 ACCTTAAAAGTAAAACTGATTACAGCTTCAAACTCTGGGAACTCCTGAAGAACATCTAAGGCAACTGATCCTTCATCTGCAGATGGAATCGTTTCAAAAATCAATTTCCGAATGCTTGATCTATTATGGAACAATGTCAAGATGATCTTGAAGTAGTCGTAGGCGGTTTTCTG-GAAAAAACGGAAACTAT-TTTTG
s caeRem4.Crem_Contig24  310292 193 +  1162296 ACTTTGAAGGTGAAACTCATTACAGCACGCATCTCAGGAAATCTTTTTAGCGCTTCCAATGCCATTAATCCTTCAACTGCTAATGGAATAGTCTCGAAAACCAGATTTCGCACCTTGGTTTTAGTTTGGAAAAGGGTCAGAATTGTTTGGTAATAGTTGCGAGCCgtgttctg-gaaaata---aaaggATACGTTT
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514   102420 184 -   141934 ACTTTGAATGTAAAACTTATAACCGCTCTCATTTCTGGGAATTCTTTGAGAGCCTTTAGTGCAGCATAGCCTTCAAGTTCTGACGAAACAGTTTCAAATATCAAATGTCTTATAGTAGTTCTAGTTTGGAATAATGTTAGAATATCTTTGAAGTATCTGTGAGCagtgatctg-aaattt------------tctta
i caeSp111.Scaffold514  C 0 I 26
s caePb3.Scfld02_62      417601 184 -   783054 ACCATGAAAGTGAAACTTATTACTGCTTTCATTTCCTTGAACTCCTTCAGAACTTTCAGAGCAACTTCTCCTTCCAATTGCGATGGgatagtttcgaaaatgagatttctgATGGTTGTTCTCTCTTGAAACAGtgtcaaaattgttttatagTACTCATACGCACTTTCCTA-AATCAT------------CGTTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   55717 181 -   140921 ACATCACACGTAAAACTGATCACTGCTTTCATTTCAGGAAACTGCTGCAGAGCGGATACGGCAGCCATGGCTTCCCGCTCTGTTGGTATTGTTTCAAACACTAATTTCCGAATAACAGTTTTTTCTTGGAATATTGCGATGACTGTTTTGAAGTAATTCAACGCAGTGTCCTGTGAAGATA----------------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                52837 406 + 21540570 I

a score=1485.000000
s ce10.chrX             1190031 10 + 17718866 TTGTAAATGT
s caeRem4.Crem_Contig24  310487 10 +  1162296 TTTTACATGT
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514   102630  8 -   141934 --CTACAGAT
i caeSp111.Scaffold514  I 26 I 1
s caeJap4.Scaffold17966   55898  9 -   140921 -TGtacatat
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      417785  0 -   783054 C
e cb4.chrX                52837 406 + 21540570 I

a score=-697.000000
s ce10.chrX             1190041 32 + 17718866 TTTTTCTCAGTT--GAATGTTTTATATCTAGTTA
s caeSp111.Scaffold514   102639 34 -   141934 TGCAACTCACTTCTGCACCTTTCAAATCTATATA
i caeSp111.Scaffold514  I 1 I 163
s caeJap4.Scaffold17966   55907 21 -   140921 -------------attgtgttttcaatcgacttg
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      417785  0 -   783054 C
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  310497  0 +  1162296 C

a score=-265.000000
s ce10.chrX             1190073 27 + 17718866 TAGAACTAGTTTTTTTGTTGAAAAAGC
s caeJap4.Scaffold17966   55928 14 -   140921 cgaca-------------tgaaaacgc
i caeJap4.Scaffold17966 C 0 I 51
e caePb3.Scfld02_62      417785  0 -   783054 C
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   102673 163 -   141934 I
e caeRem4.Crem_Contig24  310497  0 +  1162296 C

a score=0.000000
s ce10.chrX             1190100 34 + 17718866 GCCGAATATATGATCAGTTTTTGAATTAACTACT
e caePb3.Scfld02_62      417785  0 -   783054 C
e caeJap4.Scaffold17966   55942 51 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   102673 163 -   141934 I
e caeRem4.Crem_Contig24  310497  0 +  1162296 C

a score=44.000000
s ce10.chrX             1190134 18 + 17718866 TACTCATTTGCAAATTTG
s caePb3.Scfld02_62      417785 10 -   783054 TATTCATTCG--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   55942 51 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   102673 163 -   141934 I
e caeRem4.Crem_Contig24  310497  0 +  1162296 C

a score=-1898.000000
s ce10.chrX             1190152 30 + 17718866 ATCTCATATTTCTATCACCTCTATAAGTAG
s caeRem4.Crem_Contig24  310497 15 +  1162296 ATTTCTTACTTCTGC---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      417795  9 -   783054 --TGTATACCG-------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   55942 51 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   102673 163 -   141934 I

a score=396.000000
s ce10.chrX             1190182 10 + 17718866 TGACTATTCC
s caeSp111.Scaffold514   102836 10 -   141934 TGACTACAAC
i caeSp111.Scaffold514  I 163 C 0
e caePb3.Scfld02_62      417804  0 -   783054 C
e caeJap4.Scaffold17966   55942 51 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeRem4.Crem_Contig24  310512  0 +  1162296 C

a score=21648.000000
s ce10.chrX             1190192 277 + 17718866 AAACTTCATAAAA-----------------------------------------ACTCGCCTTCGCTTCAGATTGGTCCA--------------TGTATGCT----------CCAGTATACTCTG-ACAAATCATGGTACATTG-TTGCAAGAGTGCCTACT----------------------------GATCCCCAAGCTTCCACATCAGAAC---TTCCTGTTGTCAAGTGACACAATTTCAAACAGGT----------------------TT-----------------------------------------------CTTCGAAATACTTCTCATAAAGCTCCCTTTTCTCTGCATTTTCCGGAATTGTTTTGTCAAGTGTGCTTCCAAAGTGGTATGTATTGCTGGTTATGACTTTGACTTCCAGGTCCAAAAATCT
s caeRem4.Crem_Contig24  310512 299 +  1162296 ------------------------------------------------------------------ATCTTCATTATCCA--------------TGTATTTA----------CCGTTATATTCCG-ACATATCATGGTACAGCG-TTGCCAAAGTGCCAACC----------------------------GATCCCCAAACTCGAACTCCATCTT---TCATTTCTGTCAATTTCACCAATGAACTGCatgcaatctgaaaaatgctagattttttgatgagtctGACTATCTTTTAGCT----------------------ACCTTGAAAtacttttcataaattttctttttggaatcGTTCTCCGGAATTCTTTTGTCCAGTGTACTTCCAAAATGATAAGTGTTGGTTGTGATGTCAGTGACGCCGAGAtccaaaaacct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   102846 413 -   141934 -GACTTCGAAATCAACATCACCGAAAGAAATGAGTTCAGATAGTGGTGATGGAGATTCACCACGGCAGCGGAACTATTCAAGCAAGGTAACGAGTATTTTCTTGTAACGGAgccataattttcaattttaattacAGGACTGTGCTCGGATATACTTCAGCAATACAAGTAGTGACCAGTCATCTCGTTCGAATCCCAAACTTGTACTTCATTAT---ACTTTTTAGAAACGTTTTGGAGAATTTCGCAGGTTTTCTAAAAGAAACG----CCGtt-----------ctatttattcattt----------ttaatgctC--ACCTCGAAATATTGTTCGTAAACATGTTTTTTATCCGCATTTTCAGTTATGGTTTCATCTAATGTACTTCCGAAATGATAGGTATTGGTTGTTATAACATTGACTCCAATATCCAAAAACCT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      417804 313 -   783054 ------------------------------TGATTT------------------ACTAACCTCTGCACCTGCATTATCCA--------------TATATTTT----------CCattatattctg-agcaatcgtGGAACTTTG-TCGCAAAAGTTCCAACA----------------------------GAACCCCACACTTGAACGTCATCAT---ACTGTTGAGCAAGGTTACACAGCAATGAACATGTGTCCTGAAAAtagtaaattttatt-----------ttattgtttcactC-------------AACCTC--ACCTCAAAGTATTTCTCGTATAATTTacacttttcttcttgtccCGATAGATTTTTGTCCAAAATACTCCCAAAGTGATATGTATTCGTTGTGATGTTGTTAACTCCTATatccaaaaatct
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   55993 334 -   140921 -----------------------------------------aaaaatggtagaaaCGTACAAATGAGCCAGGCAGATCAA--------------TATATTTA----------CCATTATACTCTG-AGAGGTCATGGTACATAG-TTGCCAAAGTTCCAACA----------------------------GAACCCCACACTTCAGTGTTGCTACCTGCTTCTTTGACCAGTTTGACCATTAGGTTGCATGTTTTCTAAATGag--tattttgatt-----------ttaattCTTGGGATATCAATGAAAATAAAGGTTAAACCTCAAAAAACCGTTCAAATTCGACTCGCTTCTGTACGTTTTCCGCAATGCTCGTGTCGAGTACACTTCCAAAATGATAGGTATTTGTTGTCACCACATCAGCTCCA--GTTGACAAATTT
i caeJap4.Scaffold17966 I 51 I 48
e cb4.chrX                52837 406 + 21540570 I

a score=-6996.000000
s ce10.chrX             1190469 42 + 17718866 AA---------------AATTTAAGATACATTGGCAAAGGAAT--GAAAATTGAATTT------C
s caeRem4.Crem_Contig24  310811 42 +  1162296 ga---------------aatcaaacctaatt--------ttattttagactcaaaaatgttctca
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   103259 64 -   141934 AAATTATTTATGTTTTCACTCTAATATTATTGggaaacaaaattgaaaaaccggCAATATTGT-T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      418117 40 -   783054 ga---------------actcAAAGCATAttacaaaaaaccatttgaagaTCCA----------T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56327 48 -   140921 I
e cb4.chrX                52837 406 + 21540570 I

a score=18718.000000
s ce10.chrX             1190511 111 + 17718866 CTCACGATTTATAAACGTTCTCCATTAATTCCATATCAGCATTAGCAGGGAAGGACCAGTGCGGCTTGTTTTCCTGCTGCTGAAAATT-------GTATATTTT-------ACTATTAGAGTTTA
s caeRem4.Crem_Contig24  310853 125 +  1162296 CTCACGATTTGTATGCATTTGCTACAAGACTTTCATCACTGTTTGCGGGGAATGTCCAGTGTGGAATGTTCTCGGCACTCTGAAAACCAAGAtggatttttttatttcaaaaaatttgaattttt
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514   103323 115 -   141934 CTTACGACGTATAAACTTTCTCCATGAGATCGTGATCATCATTAGCCAGAAAGGACCAGTGAggcttgtttttt-cattctgaaaaac-------gtttATTTA--TCATCACTATTACAATTTA
i caeSp111.Scaffold514  C 0 I 1068
s caePb3.Scfld02_62      418157 107 -   783054 CTCACGATCGGTAAACTTTCTCCATTAGGCTTTGGTCGCTGTTAGCAGGAAACGTCCAATGCGGTTTATTGTTTATGTCCTGAAA----------GTTTA--------ATGATGAGTGaaacttc
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   56375 101 -   140921 CAAACGATTGGTAAACTTGTTTCATCAGTTCTAAATCTTCATTGGCAGGGAACGTCCAGTGTGGCTTGT------GATCCTGTAAAAT-------GTTATATTA----------ATATCGGTTT-
i caeJap4.Scaffold17966 I 48 C 0
e cb4.chrX                52837 406 + 21540570 I

a score=5734.000000
s ce10.chrX             1190622 113 + 17718866 GATAGGCTTCTGCATCTGCTTTGGCCAACTTTGAAAAATATAAGAA--CACACTTACATTACAGTCATACCCAAATCTAAGCAATTGAGATGACATGGATCCATCAAGAAGTCGA
s caeRem4.Crem_Contig24  310979 115 +  1162296 aagaaaatcttatttctatctaattcctttaaaaaaattatcggCAGTTGAACCTACATTACAATCGTATCCAAAATGTTTTAACTGCGCTGACATTGAACCATCTAGAAGGCGA
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62      418264  81 -   783054 aacaaaaatttgtttc-----------------aaaa-----------------tacattGCAGTTATATCCAAATTGTTTGAGTTGCTCAGACATCGATCCGTCCAGTAGGCga
i caePb3.Scfld02_62     C 0 I 627
s caeJap4.Scaffold17966   56476  90 -   140921 AATAG----------CTGTCAAGTTTTAAACTAAAAA--------------AGTTACCTCAGTATTATAACCAAAAGCGGAAAGTTGGGCTGACATTGAACCATCGAGAAGACG-
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   103438 1068 -   141934 I

a score=1599.000000
s ce10.chrX             1190735 12 + 17718866 ACCATTCTAAAA
s caeRem4.Crem_Contig24  311094 12 +  1162296 ACcatcctgaaa
i caeRem4.Crem_Contig24 C 0 I 602
s caeJap4.Scaffold17966   56566 10 -   140921 --TATTTTAGAA
i caeJap4.Scaffold17966 C 0 I 39230
e caePb3.Scfld02_62      418345 627 -   783054 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   103438 1068 -   141934 I

a score=0.000000
s ce10.chrX             1190747 20982 + 17718866  
e caePb3.Scfld02_62      418345   627 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                52837   406 + 21540570 I
e caeSp111.Scaffold514   103438  1068 -   141934 I
e caeRem4.Crem_Contig24  311106   602 +  1162296 I

a score=652.000000
s ce10.chrX             1211729 29 + 17718866 ATCGATTTAATTCAAAAAACCTCCTAAAA
s caePb3.Scfld02_62      418972 25 -   783054 atcaatttttcttgaaaaaact----aaa
i caePb3.Scfld02_62     I 627 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                52837 406 + 21540570 I
e caeSp111.Scaffold514   103438 1068 -   141934 I
e caeRem4.Crem_Contig24  311106 602 +  1162296 I

a score=-908.000000
s ce10.chrX             1211758 20 + 17718866 TCAACACGTGTTTCATTCAC-
s cb4.chrX                53243 20 + 21540570 TCAGCAAGCCTATAAGTCAC-
i cb4.chrX              I 406 C 0
s caePb3.Scfld02_62      418997 21 -   783054 tcatctaaacattttatcgaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   103438 1068 -   141934 I
e caeRem4.Crem_Contig24  311106 602 +  1162296 I

a score=-1598.000000
s ce10.chrX             1211778 188 + 17718866 ----------------------AAATAAAAGTTGAACAAAAAATTGAAAGAAAAATTACAATTC-AAAAATTCAATAAAAATCAGCCCGTAAAGCAGGTGAACCGTTCGATCATTCAATAAATT-----TAGGAAAAAAGAGAGAGATGATGGGCATGCAAAAATATTCTATAACCTATAGAGAGAACGAAAAATTAT---GACTTTTTAAGTGCTTAT
s cb4.chrX                53263 202 + 21540570 AAGACCGAGTCGTAttgttcagaaaaagaaaagaaatcagTTCTT--AAGAAGAATACGATAAATAGCAATAC----AAAATTAGCCCGTAAACGACAGAAACCGTTGTGAAATGGACAAAATTAGAAACCAGAAGATAAAAATAGTCTACGAGAACATTaa-----ccaaaaatcagaaaactgaaGCACACATTAT------TTATCGACTGTTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  311708 177 +  1162296 AA------------------ATAAATAGGgcagaaat-----------atgaaaatatcatcTA-ACAAATAC----AACACTAGCCCGTagaaaaggtcaaccgttggaaattcagaaaaaacgacgatgaaaagagaaagaaaaatgaagaaaacct--a-----tcaatgacaagaaaagtgacac-cagattataaaaaatttttgaataattat
i caeRem4.Crem_Contig24 I 602 I 6
s caePb3.Scfld02_62      419018 170 -   783054 -aaactgag-----------aaaaataaatatgaaac----------aaaaccaattacatttg-acaaatac----aagaaaatCCCGTAAA-AACGCAAaccgttctgaa----aaaaagacgtAGTTCATGGAAAAAGG--------TGGgaatctata-----aaaaaaacctatagAATGACAc-gaaatcat---aattttttgaatgacgaA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   103438 1068 -   141934 I

a score=36019.000000
s ce10.chrX             1211966  96 + 17718866 ------------GA---GGATATCAAATTGTCCATTGCGCCCTGAATGTCTTGGAGCATTTCGTCAATTGTGGG---CTTGTTGCAGCTTCCCACAGATGAGTGATCACT-GAAA
s cb4.chrX                53465 114 + 21540570 GAGGGAGAAGCTGGTGAAGCAATGAAAATTTCCATAGCGCCTTGAATTTCTTGAAGCATCTCATCGATTGTTGGATCGTTGTTTGATCTTCCATTGGATGATTGGTCACT-GTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  311891 108 +  1162296 AACGTAGAAGTCGG---AGATATCAGGTTATCCATCGCTCCCTGGATGTCCTGAAGCATCTCATCAATTGTTGGAGCTTTACTGGAACTACCGATAGatgat---tcact-gaaa
i caeRem4.Crem_Contig24 I 6 I 43
s caeSp111.Scaffold514   104506  97 -   141934 ------------GG---AGACAATAAATTGTCCATGGCTCCTTGTATGTCTTGAAGCATTTCATCAATGCTTGGAGCTTTGGTG---CTTCCAATAGAGAACAGATCgctaaaaa
i caeSp111.Scaffold514  I 1068 C 0
s caePb3.Scfld02_62      419188  96 -   783054 ------------GG---AGAGATTAGATTGTCCATTGCTCCTTGAATATCTTGCAGCATTTCGTCGATCGTTGGCTGTTTGCTGCCACTGTCGATAGATgat---tcgct-gaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-5463.000000
s ce10.chrX             1212062 27 + 17718866 TTTCACAAAAAGTTGAAA-------ATTTTGTTT-------
s cb4.chrX                53579 30 + 21540570 ----ATTCAATGTAGAGAGTTGTGCATTGTGAT-------A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   104603 15 -   141934 -------------------------attaagatttgGTTT-
i caeSp111.Scaffold514  C 0 I 19
s caePb3.Scfld02_62      419284  8 -   783054 -------------------------attgagat--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  311999 43 +  1162296 I

a score=546.000000
s ce10.chrX             1212089 2 + 17718866 TT
s cb4.chrX                53609 2 + 21540570 TT
i cb4.chrX              C 0 I 138
s caePb3.Scfld02_62      419292 2 -   783054 tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   104618 19 -   141934 I
e caeRem4.Crem_Contig24  311999 43 +  1162296 I

a score=-2677.000000
s ce10.chrX             1212091 245 + 17718866 ACTTTTCTCGCAAGTTTT-TGTCTCAGCACCCAAGTACCAAATGTCAACAAATATTTCAAAACTGACAACTTTCTTTCAAAGGTCTGTATGTATGTATGTCAAGAAAAAATAGTGTGATTTACGAATAATGAAAAATGAAATTTCTCAGTTTCGTACGTTTTTTTTTTTCATTTTTCTACTTCCTTCAAACAAAAATGCTCGATTTTTATGAAAAACTCCACAAATTCTAAAACATTTCAATTCTA
s caePb3.Scfld02_62      419294 130 -   783054 aatttt---gaaaattgaatatcttAG-----ATAGAGAAACTACCTACACATTtctcaacact-------ttttttc---------------------------------------------------tggcaAATCAgatttc------------gatgttttttggaattact-------------ACAAGATTTCCCGTTTTTCCT--------------AGCCTAAA-----------CTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                53611 138 + 21540570 I
e caeSp111.Scaffold514   104618  19 -   141934 I
e caeRem4.Crem_Contig24  311999  43 +  1162296 I

a score=273.000000
s ce10.chrX             1212336 1 + 17718866 A
s caeRem4.Crem_Contig24  312042 1 +  1162296 A
i caeRem4.Crem_Contig24 I 43 C 0
s caePb3.Scfld02_62      419424 1 -   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                53611 138 + 21540570 I
e caeSp111.Scaffold514   104618 19 -   141934 I

a score=8800.000000
s ce10.chrX             1212337 187 + 17718866 CCTTGCATGATCATCGGATAACAATGGTGGTAGTGCCGCCGGAATGTCAAAAGCAGTAGCCGGGCGTGTAGATGAATATCTGCAAAATTTTTCAAGTGTTGAATTTTCAGTGTAACAATGAATACATCTTCATGCTCCTACAGTAACCTACAACAATTATTTCTGTATTATGATTAATTAAAAACAT
s caeRem4.Crem_Contig24  312043 122 +  1162296 CCTTCCATGATCATCGGATATTAGTGGCGGCAGTGAAGTTGGCACGTCGAACGCATTGGTTTGACGACCCGATGAGTACCTGAATA-------------TGAAT-----ATGTAATA---------------------------------------------CTATCACAGTATCAATAGACAAC--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   104637 118 -   141934 CCTTGTATGATCATCGGACAACAGTGGTGGCAAAGAAGGTGGAACATCCATTGAATTGGTTGGACGACCCGATGAATACCTTCAAA-------------AG--------TTGTTTTA-----------------------------------------------Atcaatgaatgaattgaattct-
i caeSp111.Scaffold514  I 19 C 0
s caePb3.Scfld02_62      419425 106 -   783054 CCTTGCATGATCTTCCGACAACAACGGTGGCAAGGTGGCTGGAACGTCAAAAGCAGATGTTTGTCGGGCAGACgagtatctgaaaa-------------tg-------------------------------------------------------------------aagaattagatgtgtttt-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                53611 138 + 21540570 I

a score=53303.000000
s ce10.chrX             1212524 143 + 17718866 TATTTAAAGTATTGTAAGCTCTTACCTTATTGTACCACAATTTTCATTTGCAAATGGAAACTGATCGTTGCTGAGTGAGGAGTTGAAGGAAGACAGGTTGCCCGACGAAATGTGATGGAGACCCACATTGCAGTGTAGTGGAG
s cb4.chrX                53749 139 + 21540570 TATTTATACGATTATG----CTCACTTTATAGTCCCACAGTTCTCATTAGCAAAAGGAAATTGTTCATTGCTTTGTGAAAAGTTGAAAGAGGGCAGGTTGAAAGATGATGTGTGATGCGGACCAACGTTGCAATGAAGAGGGG
i cb4.chrX              I 138 C 0
s caeRem4.Crem_Contig24  312165 122 +  1162296 ---------------------TTACCTTATAGTTCCACAATTCTCATTCGCAAACGGGAACTGATCATGGCTGAGGGAAGAGTTGAATGACGACAGGTTGCTCGATGAGATATGGTGCATTCCAACATTGCAGTGAAGAGGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   104755 115 -   141934 ----------------------tACCTAACAGTTCCACAATTTTCGTTTGCAAACGGGAATTGATCGTTGTCAAGAGAGGCAGTGAAAGATGACAAGTTTCCAAAAGACATATTATGC------ATATTGCAATGAAGAGGGG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      419531 135 -   783054 tctttctagaaAT--------GTACCTTATTGTCCCACAGTTATCATTTGCAAATGGAAATTGATCACTGTTGAGAGAAGATGTAAACGACGATAGATTGCCCGATGAGATGTGATGCATTCCAATGTTGAAGTGGAGTGGTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=966.000000
s ce10.chrX             1212667 7 + 17718866 CTGTAAA
s cb4.chrX                53888 7 + 21540570 CTGAaga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   104870 7 -   141934 CTGAAAA
i caeSp111.Scaffold514  C 0 I 36
s caePb3.Scfld02_62      419666 6 -   783054 ctaaaa-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  312287 0 +  1162296 C

a score=-18356.000000
s ce10.chrX             1212674 364 + 17718866 TCTTTCCGCTTAACCTAATAGTGTGAGAATTTGGCTGCTCCGCTTTAAGCTCGAGTTTTGCCAGTAATAAACATATAGGAAAATTCTGTAGCTTGATTTTAACTAGAGAGTTTTC----TCATTTTCTATTTTTTATAAATTTTCTCAAATCTCTCAACGCTTTTTGTGTACTTGAATAGTTAAACTGCCCCAAAAATAT-TTTCCTAAA--CTTTTTCAATATATGAAATTGATTTGGATTTTTAAGCCAATAACAACACTAACCCTAAGCCTAATATGCGCGAAAAGGATCCCGAAAATTGTTTTCAAAAAGTTAATATTTTGGGGCAGGATATTATTCAAGTTTTTTTTCTGAAAGTTACTAGGAAAT
s cb4.chrX                53895 147 + 21540570 -------------------aatttgatgattttcattCAGTCATTTAA-----------TTTAGTGATAA---------------------------TTTATGGAAA---CTTTC---ATGATT------------CAAACGGTT----ATCTGCTGATGATattt-----------------------------------atttctcaa--ttttgtc--------------------------------ACAA----ATTGAC--------------------------------------TTTTCGCA-------------------------TTCTTCA-TTATTATTTTGTGCTTAAG--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      419672 195 -   783054 -----caga-------aataattgaat-------------tcattAAA-------------TGGTGATAA---------------------------TTGAAGTAAATGGCTCTCAAAATGATT--------------GGTTGTT----GTCGACaaacattattt-tg-aattgaacattGGTACTgcagaaatgaaacaattactaaaattttctta--------------------------------acaactacactcaa--------------------------------------ttttcagaa-------------------tatgttgatcaa-tttttattctaaaaCTAATTTCATGA-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   104877  36 -   141934 I
e caeRem4.Crem_Contig24  312287   0 +  1162296 C

a score=2141.000000
s ce10.chrX             1213038 6 + 17718866 ACTTAC
s cb4.chrX                54042 6 + 21540570 GCTTAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   104913 6 -   141934 ACATAC
i caeSp111.Scaffold514  I 36 C 0
s caePb3.Scfld02_62      419867 6 -   783054 ACCTAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  312287 0 +  1162296 C

a score=146289.000000
s ce10.chrX             1213044 310 + 17718866 CTGGGGGTGGTGGGCACTCATTTGGATCATCCAGCTCTTGATCCTCC------TCCTCATCCTTCTTCAACTTGCTAATATCACTCAATATCTTCCCAGTAGGCACCAAATTTAACCGAATTGGTGTATCATCTCCAAACAACAAATCCGAAGTACTTTTCGGCTTCACTGACAAAAACGCCGGT---------GCCTCTGGAAGAGCTGACGCCGACTTCCAGTTGTTCTGCTGATAACTGAGGTAGTCGATTTTGTCGCAGCTCGCCCGGAACGCTCGATTCGGTGCCGATGGAGCTGGCGGCGGAGGATCGTTGAGCCTTGA
s cb4.chrX                54048 319 + 21540570 CTGGCGGCGGTGGACACTCGTTTGGATCTTCCAgctcttcgtcttct------tcttcgctttttctcaatttgctTATAtcgctcaaaatttttcccgTGGAAACTAAGCTTAGTCGAATGGGGCGATCGTCTCCGAAAAGCAAATCCGAAGTGCTTTTTGGCTTAGAAATGAGATGGATAGGCTTACAATGTGCACTCGATAGAGTTGATACCGAATCCcagagatttttttcgaaaatctcctTGTCTAGTTCATCACTACTTTCTTTGAAAGAGCGATAGGGTCCTGAAGGCGCTGGAGGTGGTGGATCGTTGATCCTTGA
i cb4.chrX              C 0 I 171
s caeRem4.Crem_Contig24  312287 319 +  1162296 CTGGAGGCGGTGGGCATTCATTCGGGTCATCCAATTCTTGATCTTCC------tcctcatcttttttcagctTGCTAATATCACTCAATATCTTTCCAGTAGATACCAAGTTCAACCGAATTGGTGTGTCATCCCCGAATAGTAAATCTGATGTACTTTTCGGCTTTGACGACAGGAATATCGGTTTTGGAGGTGCCTCCGGCAGCGTTGTCGCTGATTTCCAGTTGTTCTGTTGGTAGCTCAAGTAATCGATCTTGTCACTGCTGGCACGCAGAGATCGATTGGGTGCCGATGGTGCTGGAGGTGGAGGATCATTGCTTCGGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   104919 319 -   141934 CAGGTGGAGGTGGGCACTCATTTGGATCATCTAATTCTTGCTCttct------tgctcttcttttttcaacttgcTGATGTCACTTAAAATCTTTCCAGTAGATaccaaattcaatttgattgGTGTATcatctccaaaaaataaatctaaAGTGCTTTTCGGTTTTGATGGTAAACAAATAGGTTTTGGAGGTGCGTCCGGAAGAGCGGTAGCAGATTTCCAATTATTATGTTGATAACTTAAATAGTCGATTTTATCGCTGCTAGCACGAAAACATCTCAAAGGGGCTAAAGGAGCTGGTGGTGGAGGGTCTTTGTTTCTGAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      419873 322 -   783054 CAGGCGGAGGTGGACACTCATTAGGttcttcgagttcttgctcttcttcttcctcctcttccttcttcaatttGCTGATgtcactcaaaatttttcccgtAGACACCAAATTCAATCGAATTGGTGTATCGTCTCCAAACAAAAGGTCCGATGTACTTTTTGGTTTCGAAGACAGATAAATAGGTTTCGGA---GCTTCTGGTAAAGTTGATGCCGATTTCCAATTATTAGACTGGTAACCGAGATAGTCGATTTTATCACTACTTGCTCTAAAAGTTCGTGACGGAGCTGAAGGTGCGGGTGGTGGAGGATCATTGTTCCTGAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=8380.000000
s ce10.chrX             1213354 146 + 17718866 TGCAGATGCGGGCTGTCGCTGAA---TGGGAGAAGG-----TGTGGAGTACCCGAATGACTGTGG--AGAACTGT--------AGCTGCTGTTGTAGCTGCTTGTATTGGAATGAACTGCGTAGTGGGATGGGTGCAGGCTATTC--GAGGCATGACGCTGGTGAT
s caeRem4.Crem_Contig24  312606 137 +  1162296 GGTTGTTCCTGACTGTTGTC-----TCTGAGGAGCAGTCATGGTTGAGTATCCATAGGTTTGTGG------------------GAC----ATGGTAGCTGCTGGGGTTGGAGTGAACAGCGTATTGCGATGGTTGGAGACTGCTG--GCCGCTAGACGTTGATGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   105238 140 -   141934 GGTTGACACAGGCGGTGTTTGCAAATTTGTGGAATA-----TGAAG------GATAGGTTTGCAGA-GAAGGTGT--------AGC----ATGATAGCTTTTTGAATGTTGTTGAATAGCAAACTGAGATGTATGCATATTACTTGACGAGCT--GCGGTGATggt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      420195 155 -   783054 GGTAGAAACAGGTTGCCGTTGAAGATTCGAGGAAGA-----CATTGCATGTTGATAAGTTTGTGGATGAAGTTGTGTAGACGGAGC----ATGATAACTGTTGGCGTGATGATTAACAGTATAATGAGAAGGATGCAGGCTATTT--CCAGCTTGGCGTTGATGAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I

a score=1173.000000
s ce10.chrX             1213500 4 + 17718866 CCTG
s caeRem4.Crem_Contig24  312743 4 +  1162296 Cctg
i caeRem4.Crem_Contig24 C 0 I 34
s caePb3.Scfld02_62      420350 4 -   783054 CCTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I
e caeSp111.Scaffold514   105378 0 -   141934 C

a score=116.000000
s ce10.chrX             1213504 6 + 17718866 TAACAA
s caePb3.Scfld02_62      420354 6 -   783054 AAAGAA
i caePb3.Scfld02_62     C 0 I 33
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I
e caeSp111.Scaffold514   105378 0 -   141934 C
e caeRem4.Crem_Contig24  312747 34 +  1162296 I

a score=0.000000
s ce10.chrX             1213510 481 + 17718866 TCGGGGAATGAGAATTAAAATATTTTCTTGTTCTGTCACATCACACAATAACAATTTCTAGTTTTTTTTTCTTGGGGATTCTTGGGGAAAATTTTTGATTTCAAATTTGTTTCAATTTTTAGGAGCTACTGAATGCCCTGTTGCTTGATTTTTTTTGACTTCCAAAAATGTTGGTTTAAAAAAAACTGAGTATTCATCGTTTTTTTGTCCGGAAATTGAAAAAAATTCAAAAGATTTAGGGAAGTTTTATTATAACATTCTGTTACTTTCGCATGATGGGAATAGTTTTTAATCGTTTTTCCAAAGGCTGTAATCATCTTTAATTCTCATTTCTTGACAAAAATTGCCGTCTTTCAGAAAGACACTTGACTCCCATTTAGAAATTTCAAGAAATTAGTAGTATTCCAACATATAAATTTACCCATAGACTTGATAATTTTGGAAATAAAATTTGAATTAGCATCTTAACACCTTGACAATA
e caePb3.Scfld02_62      420360  33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I
e caeSp111.Scaffold514   105378   0 -   141934 C
e caeRem4.Crem_Contig24  312747  34 +  1162296 I

a score=433.000000
s ce10.chrX             1213991 6 + 17718866 AAATAC
s caeRem4.Crem_Contig24  312781 6 +  1162296 AAACAC
i caeRem4.Crem_Contig24 I 34 C 0
e caePb3.Scfld02_62      420360 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I
e caeSp111.Scaffold514   105378 0 -   141934 C

a score=573.000000
s ce10.chrX             1213997 2 + 17718866 TC
s caeRem4.Crem_Contig24  312787 2 +  1162296 TC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      420393 2 -   783054 TC
i caePb3.Scfld02_62     I 33 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                54367 171 + 21540570 I
e caeSp111.Scaffold514   105378 0 -   141934 C

a score=546.000000
s ce10.chrX             1213999 1 + 17718866 A
s cb4.chrX                54538 1 + 21540570 A
i cb4.chrX              I 171 C 0
s caeRem4.Crem_Contig24  312789 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      420395 1 -   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   105378 0 -   141934 C

a score=127500.000000
s ce10.chrX             1214000 422 + 17718866 CTTTCAATTTCTTGATCGTCAATCCAAACCGCTTCAAATGCCCCAGTCGCTTGACACCAATATCCTCGAAATCTTCCCATTGCAAGTCCAAAACATCACTGACAGATGTATAGCGTTGACTTTCAAACATTGGAATGTACTCGGCTAGTGCAATTGCATGCAGCCACTCTCTCAG---------------------------------------------------ACTGTTATTCGGCACAACCGACGGCCATTGGTCAATTATTTTCCAGCTGTGGATATCAGACATCAACTTTTTACGATGATCCGGGTTCTTGATTCCTAGACTGAGGAGATCGGCTGGGGTACATCGGGCTGAAATATTGATTAGTTTTTGTTGTGATTTCTATTATTTAATTTACACCTGATTTTTAGCTCATATCAGTTTTGTATCAAATAAAATTTCACAGAA------------ATTTGAAGATAACCAAATTTTG----------------------
s cb4.chrX                54539 491 + 21540570 CCTTCAACTTCTTAATTGTCAACCCGAACCGTTTTAAATGACCCAATCGCTTAACACCGATGTCCTCGAAATCTTCCCATTGCAAATCCAGCACGTCTTGAACAGTTTTATACTTTTGACTTTCAAATAATGGAATATATTCTGCTAGAGCTATTGCTTGGAGCCATTCCCTAAAGAATTGAATTTCGAGTGTCACTATCAATAACTTTG-------ATACCTTAGGTTATTGTTTGGAACCACATGTGGCCACTGATCGACAATTTTCCAGCTGTGAATATCCATCATAATCTTTTTTCGATGATCAGGATTTTTGATACCAAGAGTCAAAAGATCGGCGGGAGTGCagcgagctgaaaaaatagc---attttgTTAAAATT--GATTGTTTA--TTA-ACTCAATTTTGCCTTTAAGTTATTTTGGCTAGGCATGCAGTTTCTTAGTTAAAGCTGCGTTTATTCTAACA-ATTTAATTTCTAAGAAAGTTACTTCCAAAATTTG
i cb4.chrX              C 0 I 229
s caeRem4.Crem_Contig24  312790 360 +  1162296 CTTTTAATTTCTTGATAGTCAACCCAAATCTCTTCAAGTGTCCCAATCGTTTCACTCCAATATCCTCAAAATCCTCCCATTGCAATTCCAAAAGATCCCTGACAGTTGTGTATCGTTGACTCTCGAAAAGGGGGATGTACTCAGCCAGGGCAATTGCATGCAgccattctctgaa-aatataatgtaG---------ACAAATATGTTTGATTGGAAATACCTCAAGCTGTTGTTCGGAACAACTGATGGCCATTGGTCCATAATTTTCCAACTATGGATGTCATTAATGAGTTTCTTGCGGTGATCCGGGTTTTTGATTCCGAGACTTAGTAGATCTGCGGGTGTGCAGCGAGCTGAAAG------------------------------------------------------------------------------------------------------ATTTAAACA-----------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   105378 336 -   141934 ctttcaattttttgatagtcaAGCCAAATCGTTTTAGATGTCCGAGCCTTTTGACTCCAATATCTTCAAAATCTTCCCATTGTAAATCCAATATGTCTTTGACAGTTGAATACTGTTGACTCTCAAAAAGCGGAATGTACTCAGCAAGAGCAATAGCGTGCAGCCATTCTCTTAA---------------------------------------------------ATTGTTGTTTGGTACTGCAAATGGCCACTCATCCGAAATTTTCCAGCTGTGAATATCTGTGATGAGTTTCTTTCGATGATCGGGATTCTTGATTCCAAGGGCTAATAAATCAGCTGGCGTGCAACGAGCTATAAACATA--------------------------------------------------------------------------------------------------ATATAAACA-AGCTAAATTTAAC---------------------
i caeSp111.Scaffold514  C 0 I 13
s caePb3.Scfld02_62      420396 315 -   783054 CTTTTAATTTCTTGATAGCCAATCCAAAACGTTTCAAATGACCTAACCGCTTCACTCCaatatcttcaaaatcttcccATTGCAAATCCATGATAGCTTTGACTGTTGAGTATTGCTGACTTTCAAATAGAGGAATATATTCCGCTAGCGCAATTGCATGTAACCAATCTCTTAG---------------------------------------------------ACTGTTATTTGGTACAACAGAAGGCCATTGATCCGTAATCTTCCAGTTGTGGATGTCAGCAATCAGTTTCTTACGATGACTTGGGTTCTTGATTCCGAGACTGAGGAGATCAGCCGGGGTGCATcgggctgaaaa--------------------------------------------------------------------------------------------------------------------aaatt-------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=0.000000
s ce10.chrX             1214422 38 + 17718866 GGCAGTGCAAAGTATTTTTGGTCAGTGCAAAAGTATTT
e caePb3.Scfld02_62      420711  0 -   783054 C
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55030 229 + 21540570 I
e caeSp111.Scaffold514   105714 13 -   141934 I
e caeRem4.Crem_Contig24  313150  0 +  1162296 C

a score=-6583.000000
s ce10.chrX             1214460 131 + 17718866 TTGGTCAGTGCAAATGCATTGTTGGTCAGTGCAAAGGTATTTTTGGTCAGTGTAAATG--CATTTTCGGTCAGTGCAAGTCTGTCATTTTGTCATGTACCAAAGCACCTTTGTTTTAAATCAAACATTTCCAG
s caeRem4.Crem_Contig24  313150  22 +  1162296 --------------------------------------------------TGTTATTG--CATGTTCAGA---------------------------------------------------AAAC--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      420711  35 -   783054 -----------------------------------------------cattattaatgaatattttcttt---------------------------------------------------gaacttctgtag
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55030 229 + 21540570 I
e caeSp111.Scaffold514   105714  13 -   141934 I

a score=-7216.000000
s ce10.chrX             1214591 42 + 17718866 -CACAAATTTTACCGATCTTTGAATTTAATCAACCATCAACTC------------------------
s cb4.chrX                55259 53 + 21540570 -CATAAGTGTGAACGTTCGCGG-------------ATAAATTACTCAGGCTATTTGAATTTGGACAT
i cb4.chrX              I 229 C 0
s caeRem4.Crem_Contig24  313172 10 +  1162296 -CACA--------------------------------AAACTA------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      420746 18 -   783054 cctcaaaaaaaa-------------------------aaactc------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   105714 13 -   141934 I

a score=158274.000000
s ce10.chrX             1214633 307 + 17718866 ACCAATAGTCTGTAGATCATAACCTTGCTTCAAGAAAACCGCCAAATAATTGCTCATATTGATACTATCCAGCCAGTTGGCCAAAACCTCCGCGTGCGGCACACCACTCTGCACCATGCTGGTCACATCGACCTCGTGAATGGAGCGATACAAGGAATCATCCAATCCATGAATTGATGATGAGGAGCCGCTTCCACTCTCCACAGAACGCACACTGTGTGCTGATTCGCATCCAGATTCATTGCTTTGCACACCCGACGGGAATGATGAGGCGGACGTTGACGTCGAGCACTG-GAAA--TTTGGTTTT-------
s cb4.chrX                55312 305 + 21540570 ACCTATAGTTTGAAGATCGTATCCTTGTTTTAAAAACAACGCCAAATATTGGCTCAAATGAATACTATCTAACCAGTTGGCTAGAATTTCCGCGTGAGGCACGCCACTCTCAGCCATTCCTGTTACATCTATCTCATAAATAGAGCGATAAAGTGAATCGTCCAACGCATGAATTGAAGATGAGGAGCCGCTACCGCTTTCTACAGAGCGGACACTATGAATAGATTCACGACCGGATTCATTACTTTGTACAGCGGACGGAAACGATGAAGCAGATGTAGATGTTGAGCACTGAGATA------------tgtttt
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24  313182 299 +  1162296 ACCAATAGTCTGTAGATCATATCCCTGCTTCAAAAACACTGCCAAATAACTATTCATATTGATGCTATCCAACCAATTCGCCAAGATTTCCGCATGTGGGACACCGCTTTGTACCATTCCGGTCACGTCCACCTCGTGAGTCGAGCGATAAAGAGAATCGTCCAATCCATGAATTGACGATGAGGACCCACTACCACTTTCCACTGAACGGACGCTATGAGCAGATTCACAACCAGATTCATTGCTTTGGCCAGCCGACGGGAATGATGAAGCAGATGTGGATGCGGAACactg-gaaa------------t-----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   105727 307 -   141934 ACCAATTGTCAGAAGATCATAACCTTGCTTGAGAAAAACTGCCAAATAGTTATTCATGTTGATACTATCCAACCAATTGGCTAATATTTCTGCATGTGGAACGCCGCTTTGAACCATTGCTGTCACATCCACCTCTTGTGTTGGCCGATTGAAGGAGTCGTCCAATATATgaattgaagatgaagaaccACTTCCACTTTCAACAGAACGAGTACTGTGCGTAAAGTCATAACCAGATCCCGCGCTTTGAGT---ATATGGAAAAGATGAAGCAGAAGTGGATGCGGagcactg-aaaaattcaagatttc------
i caeSp111.Scaffold514  I 13 I 38
s caePb3.Scfld02_62      420764 298 -   783054 accaatagTTTGCAGATCATATCCTTGCTTCAAAAACACCGCCAAATAATTGCTCATATCAATGCTATCCAACCAATTTGCCAGAATTTCAGCGTGTGGGACACCACTCTGTACCATGCCGGTAACATCGACTTCGTGTACAGAACGATAGAGTGAGTCGTCCAATCCATGAATTGACGATGAGGAACCACTACCGCTTTCCACGGAGCGCACACTATGTGCAGATTCACATCCGGATTCGGCGCTCGGAGTGGCAGAAGGAAATGATGATGCAGATGTTGAAGCGGAAcacta-caaa------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=0.000000
s ce10.chrX             1214940 8 + 17718866 GGGATTTG
e caePb3.Scfld02_62      421062 0 -   783054 C
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55617 20 + 21540570 I
e caeSp111.Scaffold514   106034 38 -   141934 I
e caeRem4.Crem_Contig24  313481 0 +  1162296 C

a score=-18058.000000
s ce10.chrX             1214948 299 + 17718866 GAGAAGGTGTGGGTAGGAATTCAACTTCTCAGTGATTTGAAAATTCGCCAATTTGGAAATTTGCCTAATATGTAGATTGTCACTGAATTTAACCCAAAGATCTAAATTTCAGTAGGAGCTCTTTAGTCAGTGCAATTACCTTTTGTCAGTGCAAATGTAATTCACCAATTCTCTGTAGGTTGACCCAAAAAACTATCGGTTTTTATAATGTT----CTGTAGTAAATTTTTTTAGTTGTTAAAACTTTTAATTTACACGTTTTTCTTGTCAGAATTAAACCGTTAACCTAGATACCACTATAC----
s caeRem4.Crem_Contig24  313481  76 +  1162296 ---------------gaaa------------------------------------------------------------------------------ag----ataTTATAGAAAAAGT-------------------------------------------------------------------------------------GTGATGGTTAGGTGGTATGGAGTATTTTTTGTAGTGAAGATTGTGTACT---------------------------------------------AATAT----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      421062 145 -   783054 ----aaat-----caaaaatccaactt-----tgattt------------------------------------------------------tcctgag----aaattgaaaaaaaaattgttccatcA----AATTATC----------------------------------------AGATCAAAAAACATACAGTCTATCGCAGTAGTTATGCTGTTTTTAGTCTACTTT--------CATCATCCATTTCTa--------------------------------------taaaatattctc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55617  20 + 21540570 I
e caeSp111.Scaffold514   106034  38 -   141934 I

a score=-3008.000000
s ce10.chrX             1215247 18 + 17718866 AAAACATTTAAAAATA--TC
s cb4.chrX                55637 16 + 21540570 AAACCAAATGAAAACA----
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig24  313557  5 +  1162296 -----------TATCT----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      421207 18 -   783054 aaaacaccaaaaattgcT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106034 38 -   141934 I

a score=66652.000000
s ce10.chrX             1215265 131 + 17718866 TACCTTTGCACTTTCGAACCCAGAGCTACTCTGGCTTGAGCTTGAGCCAATTGAGGCGTAATGATTCTCAACTTTTACAGGATACAAGCACGATGACGATGAATACATAGCAGTCGGCGGATCTGTAAAAA
s cb4.chrX                55653 128 + 21540570 TACTTTAGCACTTTCGAAACCTGAACTACTTTGACTTGAACTCGATCCTATCGATGAGTActgattttccattttagTTGGATACAAGCAAGACGAAGAAGAATACAT---CGTAGATGGCTCTGCAAAAA
i cb4.chrX              C 0 I 399
s caeRem4.Crem_Contig24  313562 127 +  1162296 TACCTTGGCACTTTCAAACCCGGAACTGCTCTGACTTGAACTCGAGCCAATCGAAGCGTAATGGTTCTCAACTTTGGCCGGATACAAGCATGAAGACGAGTTATACAT---GTTGGATGGATCTGAAAAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   106072 128 -   141934 TACCTTTGCACTTTCAAAACCCGAACTGCTCTGACTAGAATTTGAACCAATTGAAGCGTAATTATTGTCCATTTTATTCGGATAGAGAGCCGAAAACGAGGAGTACAT---ATTGGATGGGtctaaaaaaa
i caeSp111.Scaffold514  I 38 I 3
s caePb3.Scfld02_62      421225 128 -   783054 CACCTTTGCACTCTCAAAACCTGAGCTACTTTGACTCGAACTAGAGCCAATTGAAGCGTAATGGTTCTCCACTTTGTTCGGGTACAAGCATGTTGACGAAGAATACAT---CGTGGACGgatctgaaataa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=9536.000000
s ce10.chrX             1215396 204 + 17718866 CAAATATATGAGCACACGTACACTTTTTTATCTACG----GAAAGAAGAAATGGGAGTTGCTGGGGGGGGGGGGGGGGGAGTACTGGAGAAAA-AACAGAGTTGCTCTCTACTCAGCGCTGTGTACGAGTAAAGGA----------GAGATATCCGATGACAATGACAACACAAAGTCAAATGTAACAACAACACGGGTTTCGACTTTCATTCCTTTTT
s caeRem4.Crem_Contig24  313689 137 +  1162296 GTAGTAT----------------ATCTTAATCCAAACAGAAAAGAAGTGAAcaaga-----------------------ggaa------aaaa-aacaga----------------------gaaaagcTGCACAT----------GAGATATCCGATGACAATGACA--ACAAAGTCAAATGTAACTAC--CAgaggtttcaattttcatctattttt
i caeRem4.Crem_Contig24 C 0 I 130
s caeSp111.Scaffold514   106203 134 -   141934 aaacta-----------------aTTTCATTCTATA-----------TGAACAAAA-----------------------AGCATTAGCGAGGgcgaaaga----------------------aggaaaaaatgaaattcctCTAGCGAGATATCCG------ATGACA--ACAAAGTCAGG-GGAACTA---CAAAGGtttcaatttacatttattttt
i caeSp111.Scaffold514  I 3 C 0
s caePb3.Scfld02_62      421353 131 -   783054 aaagta-----------------ggttcaatccgaa----aaaagagtgaacGAAA-----------------------AGCATGGATGAAAA-AACaga----------------------gggagggagagaga----------ggaatATCAG------ATGACA--ACAAAGTCAAATGTAACTA---CAaaggtttcaattttcatctcattcC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55781 399 + 21540570 I

a score=273.000000
s ce10.chrX             1215600 1 + 17718866 T
s caeSp111.Scaffold514   106337 1 -   141934 t
i caeSp111.Scaffold514  C 0 I 294
s caePb3.Scfld02_62      421484 1 -   783054 T
i caePb3.Scfld02_62     C 0 I 295
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55781 399 + 21540570 I
e caeRem4.Crem_Contig24  313826 130 +  1162296 I

a score=0.000000
s ce10.chrX             1215601 937 + 17718866  
e caePb3.Scfld02_62      421485 295 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                55781 399 + 21540570 I
e caeSp111.Scaffold514   106338 294 -   141934 I
e caeRem4.Crem_Contig24  313826 130 +  1162296 I

a score=658.000000
s ce10.chrX             1216538 39 + 17718866 AAACAAAAAATAAATTCTCATATCTTCACTTTTAGAAAT
s cb4.chrX                56180 32 + 21540570 AAATTAGAAAAGAATTCTCA-------ACTacgaaaaaa
i cb4.chrX              I 399 C 0
e caePb3.Scfld02_62      421485 295 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106338 294 -   141934 I
e caeRem4.Crem_Contig24  313826 130 +  1162296 I

a score=-1523.000000
s ce10.chrX             1216577 34 + 17718866 ACCAA--AAAGTTTTTA----CAAAGAAGCCGGGAGGAGG--------------
s cb4.chrX                56212 54 + 21540570 accaattgaagtttttattttctaaacTGGCACGAGCAGAGTTTTAGTCGACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  313956 28 +  1162296 acgaa--aaagtttttg--------------------aaggcTTCTGACG----
i caeRem4.Crem_Contig24 I 130 C 0
e caePb3.Scfld02_62      421485 295 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106338 294 -   141934 I

a score=180.000000
s ce10.chrX             1216611 1 + 17718866 A
s cb4.chrX                56266 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  313984 1 +  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      421780 1 -   783054 A
i caePb3.Scfld02_62     I 295 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106338 294 -   141934 I

a score=42544.000000
s ce10.chrX             1216612 76 + 17718866 AAATGTGTGAATAGAGTGTGTCGCCGTTTCCGCTTAAAAATGCAGTTTTG------------TCGGCACCACTGAATT---------CATAG---TTTCT-
s cb4.chrX                56267 86 + 21540570 ATATTTGTGAATAGAGTGTGTCGCCACTTccgctcaaaaattcagttttg------------acGGAGTTGCTGAATTCTCCGAATCCATAG---cttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  313985 92 +  1162296 AGATGTGTGAATAGAGTGTGTCGCCACTTCCGCTCAAAAATGCAGTTTTGTCAGCCCCAGCAGCGGCGCTGCTGAATT---------CATAGGCTCTTTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   106632 79 -   141934 AGATGTGTGAATAGAGTGTGTCGCCACTTCCGCTCAAAAATGCAGTTTTGTCGGA-------GTGGAG--ACGGAatt---------catag---ttttt-
i caeSp111.Scaffold514  I 294 I 494
s caePb3.Scfld02_62      421781 77 -   783054 AGATGTGTGAATAGAGAGTGTCGCCACTTCCGctcaaaaatgcagttttgtCG---------ACGAAG--ACTGAATT---------CATAG---CTTTC-
i caePb3.Scfld02_62     C 0 I 4
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=3177.000000
s ce10.chrX             1216688 8 + 17718866 CAATTTTC
s cb4.chrX                56353 8 + 21540570 cgattctc
i cb4.chrX              C 0 I 144
s caeRem4.Crem_Contig24  314077 8 +  1162296 CTATTCTC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      421862 8 -   783054 CTATTCTc
i caePb3.Scfld02_62     I 4 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106711 494 -   141934 I

a score=329.000000
s ce10.chrX             1216696 2 + 17718866 CG
s caeRem4.Crem_Contig24  314085 2 +  1162296 Tg
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      421870 2 -   783054 tg
i caePb3.Scfld02_62     C 0 I 234
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I

a score=426.000000
s ce10.chrX             1216698 32 + 17718866 CGTGTATTTTCTATCAGAAATTCTCAAAAACT
s caeRem4.Crem_Contig24  314087 32 +  1162296 tgtccttcttctcttcaaaaaagtataaaact
i caeRem4.Crem_Contig24 C 0 I 202
e caePb3.Scfld02_62      421872 234 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I

a score=0.000000
s ce10.chrX             1216730 286 + 17718866 TTTCAAAAGTCAGATGGGAGACCTGTGCCTGAATTAGTTTCAATTTGAAAAAGCCAATATTTAAGCTTTTGAAATGAAAATGAAATTGAAAAAATTGAAAAAGTAAAGATACTTGTTTACCAAATTTGCCGGAAAAAAGGGGAGAGATGATAGACAGACTCATTAATACTTTCACTCTTCTTTTAGGACAGCCCAATAATATTTTTCTCATATGACATTTCATTTTGAGAGCGGAAAGATGCAAAAAATCCCGCATTGCTGGGCACGAGCACGAAAGAAAAAAGTA
e caePb3.Scfld02_62      421872 234 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I
e caeRem4.Crem_Contig24  314119 202 +  1162296 I

a score=60.000000
s ce10.chrX             1217016 2 + 17718866 AG
s caePb3.Scfld02_62      422106 2 -   783054 AA
i caePb3.Scfld02_62     I 234 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I
e caeRem4.Crem_Contig24  314119 202 +  1162296 I

a score=8471.000000
s ce10.chrX             1217018 103 + 17718866 CAAATCCAATTACTTGAGGAGAGGGAATCTAATTCCTGCTTC---TGGGGAACAATGACACTTGAAACCTCC--AGGATGAGAAAAAA-------ACTGA------TTTTTTGTTTTTTAA
s caeRem4.Crem_Contig24  314321  98 +  1162296 CAAATCCAATTACTGAGGAA----GGATCTAA----TCTTTCGAAGGAGGGACAATGACACTTGAAACCTCA----GAGGACAAAAAA-------TGTGTGC----GTGTCTGTTTTTTGA
i caeRem4.Crem_Contig24 I 202 I 197
s caePb3.Scfld02_62      422108 106 -   783054 CAAATCCAATTACTAGAGAA----GGATCTAA----TGTTTC------GGGACAATGACACTTGAAACCTCCTTGtgtgagcaaaaaattttttttgtgagcagaagttctttttttttg-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I

a score=532.000000
s ce10.chrX             1217121 31 + 17718866 GGATTACATTCAAAACCTAGTCAGAAAAAAA
s caePb3.Scfld02_62      422214 31 -   783054 agaatctatcaacaaattcaatagagaaaaa
i caePb3.Scfld02_62     C 0 I 156
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I
e caeRem4.Crem_Contig24  314419 197 +  1162296 I

a score=0.000000
s ce10.chrX             1217152 651 + 17718866  
e caePb3.Scfld02_62      422245 156 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56361 144 + 21540570 I
e caeSp111.Scaffold514   106711 494 -   141934 I
e caeRem4.Crem_Contig24  314419 197 +  1162296 I

a score=712.000000
s ce10.chrX             1217803 85 + 17718866 TTCCTCAAAAGTACGCAAAAATCGCTCAACAAAGCGGAAACTTCTTCAAATAACTTTTTTCTTCTTTTCAAAAGAACTTTTCTGG
s cb4.chrX                56505 76 + 21540570 TTACtcaaaattactaaaaaacCTCT--Attgttcgaaaa-----tcaaaagatttgTGTTTCAAATTCTCCAG--CtttttttG
i cb4.chrX              I 144 C 0
e caePb3.Scfld02_62      422245 156 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106711 494 -   141934 I
e caeRem4.Crem_Contig24  314419 197 +  1162296 I

a score=285.000000
s ce10.chrX             1217888 39 + 17718866 TCAAAATCACGTTTCCTCTCATATTATTTCACAACATTA
s cb4.chrX                56581 37 + 21540570 TCAACGttttatttcgaaattagAAATCTCACTG--TTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  314616 33 +  1162296 TCAAAACCACATTTCCCAATAAAAAAT-TCACTA-----
i caeRem4.Crem_Contig24 I 197 C 0
e caePb3.Scfld02_62      422245 156 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   106711 494 -   141934 I

a score=-1915.000000
s ce10.chrX             1217927 9 + 17718866 AAAACCACA------
s cb4.chrX                56618 9 + 21540570 -----CATAATAAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   107205 9 -   141934 ------aaaattatt
i caeSp111.Scaffold514  I 494 C 0
e caePb3.Scfld02_62      422245 156 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  314649 0 +  1162296 C

a score=42567.000000
s ce10.chrX             1217936 226 + 17718866 ----ACTCACTGGGCGTTGAGGTGCGACTGCCATT---GAAGACATGAAAAGAGTCGGAGCCAA---AAGAGCCAGAAGTGGATTTCGTCATCATGTTATTTGGTCTGAAATATATTTTTAAAGAGAGGGTAGGGGATAAC----------------------------------AGGAAGCTTACCGCTGATTACTGGTATCACCATAACAAGAGGTTGTCCTTCCGAATGAAGACAT---TTGAGATGGGGTGTTACGGTTGATGTCTGGA
s cb4.chrX                56627 207 + 21540570 ACTTTCTTACTTGGTGTCGGAGTGCGGCTGCCGTT------------AAAAG---------------ATGAGCCGAAAGAGGTGCATGCCGTCGAATTTGTTGGACTAAAAA-------TTAGCATAATTAGATT-ATATC----GTGTGCAATG------------------------AATTTacatttgataatttttttctgcgaTCCACGATGTTGTCCTCCCAAATGAAGCCAT---TGGGGATGGTGTGTTTCGGTTTATGTCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  314649 250 +  1162296 --------ACTAGGCGTGGAGGTGCGACTGCCATTGTTGAATACATGAAAAGAGTCGGAGCCAA---ATGAGCCGGATGTGGATTTCGTCATCGCATTATTCGGTCTGAAAAAGg----cgaaaacaatcaaaat-tcAGC----GTTTTCATTGGGAtttatttctcgaaaaacagGAAACCTACTTCAGATTATTCGTATCGCCGTAGCATGATGCCGTCCGTCCGAATGAAGTCAT---TTGAGTGGGCGTGTTGCGGTTGATATCTGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   107214 234 -   141934 ----acTCACTGGGTGTCGACGTGCGACT------------TGCTTGAGAAGACTCGGAGCTAA---AACAACCGAAAGTCGATT---TTGTCGTGTTGTTCATTCTGAAGGAA-----TAAAAgtaatgaaaataataatgagGACAATCAGTG---------TTCCGACAGAAAGCTAACTTACTTGTGGTCGTGTTTGTCACCGTAACAGGAAGTGGCACGTCCAAAAGATGTCAT---CTGGGTTGGAGTGTTACGAttgatatctgaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      422401 235 -   783054 ----ACTCACTAGGCGTCAAGGTACGGCTACTATT---GAATGCGTGCAACGAGTCAGAGCCAAACGAGCAACCGGACATTGATTTCATCATCATGttatttgttctgaaa---------aaaataaatgaatttattcAC----ATGATCAG------------------AAAGAGTAGAATCACCTAAAATTGTTGTTATCCCCATAACACGAAGTGGCTTTGCCAAATGAAGTCATTGACTGGGTTGGCGAATTGTGGTTGACGTATGGG
i caePb3.Scfld02_62     I 156 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-406.000000
s ce10.chrX             1218162 2 + 17718866 AA
s caeRem4.Crem_Contig24  314899 2 +  1162296 TA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   107448 2 -   141934 aa
i caeSp111.Scaffold514  C 0 I 52
s caePb3.Scfld02_62      422636 2 -   783054 TT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56834 0 + 21540570 C

a score=-8675.000000
s ce10.chrX             1218164 116 + 17718866 ----------------TTGAAAAAATTGAAGTTTTACTAAGTTCGGTATGTTTTATCCGGGTTTTTCAGGTTCACATCACTAAAGATA----TTTTCTAGATTTTATTAATTAATTTGAAATTCCTCAGAATCATG
s caeRem4.Crem_Contig24  314901  52 +  1162296 -TTT-----GATGAATTTGTGTGAATAGAGGTtatg--aaatttg-----------------------------------------------ttttata--------------aCTTGGTA---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      422638  92 -   783054 TTTTGAACCGATGAACTC-TGAGAAATGTACTTTTG--AAACCTG-----------------TACTCAG----ATaacaacaaaatttcaatttttctaaattcagtcTAGGT-TTT-------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                56834   0 + 21540570 C
e caeSp111.Scaffold514   107450  52 -   141934 I

a score=-1482.000000
s ce10.chrX             1218280 268 + 17718866 TACAGATGTAGG------AATTCGAAAAAAAGTTTGACCAATTTTTTCGAATATTAATATGTGCAGCTTAAACATCTAAACTCCTTGTTAAAGTGGGACAATTTTAA-ATTTTTGGGA--AACTTGT---------TACTTACCATGATACTGAACAATGGAGCAACTTCTGCGTGGAACAGCCGGTGCGGGCACGGGTTTGG---AAAAAGTGGATGTTGGATTTTTTGGCGTCTTTGCTAGTCGGGAACTCATTTTGTTGTCTGAAAAAAA--------ACCAACCAATTTAATT----------
s cb4.chrX                56834 174 + 21540570 --------------------------------------TACAGTTTTCAACGATGAA-------------------------------------CGTTTAATT-----ATTTGGCTGA--AACACAA--------------ACCATGATAATGGCTAATAGAACAA---TTACGCGGTCCATTCGGTTTGGATGCTGGGGTTGAACAAAACGTGGATGTTgggtttttctgatttttcgcaATCCTCGAAGTCATTTGGatatctgaaaacat----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  314953 272 +  1162296 -------ATAGG----gagatttcaaaataatttgaacaacatttttcaagtacGAA----------------ATCTGACGCTGTTGCA----CCGCATAATTTAAGAATTGCAGTCATCAACATAATGAAACCA-CTCTTACCATGATACTGTATAGTGGAGCAACTTCTACGCGGGACAACTGGAATCGAGGCTTGCTTGG---AGAAGGTTGACGTTGGGTTCTTCTGGTTTTTGGCGATACGTGAGCTCATTTTGTTATCTGTAATGATGTGTTATATAGTGAGGATTGCAACAAGTGGGACC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   107502 228 -   141934 -----ATGTGAG-------------------ATTGCTCCAAAAATTAGAAGGAAAAC----------------ATCGGAAAACACCGCG-----AAAACATCT-----TGTTCGGTAA--AACAATC---------AACTCGCCAGAATATGGAAATGTTGAAGAACTTCTGAGTGGCAGCACTGGAAGAGGTACAGGTTTGGATGTGAATGTAGAAGTagcatttttttgatttttggcaATCCGAAAGCTCATCttgttatctgaaaaata--------tattaccTATCTCATT----------
i caeSp111.Scaffold514  I 52 I 31
s caePb3.Scfld02_62      422730 229 -   783054 ----TGTACTAGCTCATTGGCCACAGCTTTTGtttctccacatttt----------------------------ttggattattcttTG-----TGCACATTC-----AATGCGATCATTATAAATC--TCGCTATATCTCACCATGATATTGTATCGTCGAACAACTTCTCTGTGGGACCGCCGGGAGAGGTACAGATTTTGGCATGAAAGTGgaagttgaatttttctggtttttagcGATTCGGGAACTCATTTTGCTGTCTGAAAAACG----------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-17672.000000
s ce10.chrX             1218548  89 + 17718866 TTATTAGTACATACATATAAAAACA-----------------------------------TTTGAAAGTGTA------------ATAGG--TCCATTCCCACAAGTATTATATCTGAGCAATTTTAGGCAGTTTTTTA
s cb4.chrX                57008  62 + 21540570 ------------------------------------------------------------tttccaa-agtA------------ATGGGTTTACATTTCGGGAAGTTCAAACTTTTCGctattttaa---gttttttg
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig24  315225 133 +  1162296 TAATTAGCATAGTC-TGTTGACACAACTGCGCTGCACGAAATGCCT--TGGTTTCACGGGTTTTCAA-TGAACAGGTGGTAAATATGGGTGTCTGAGTGaagaaaattctatttttcac-gtATTAGTTCGTTTTTGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      422959  90 -   783054 ----TAACAT----------ATACAACTCGGTTGCCGGCGGCGGTTTCTGGACCCGTTGATTTTT-----------------------GCTTCTAGGCAAAGATTGGCAGATTCCGCCCAAGCTTGG-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   107730  31 -   141934 I

a score=-6205.000000
s ce10.chrX             1218637 113 + 17718866 --AATTAAAAATGGGCTC----------AAG----GTCCAAAATCTA--TAAGCTTCAACCTGAGAACCTAAGCTTGGCGGCCTATT----TATCAGCCTTTGAGTCGTAAGTGACCGAAGCCTGAAGGTTTACG
s caeRem4.Crem_Contig24  315358 114 +  1162296 AGAACTGGAGCATTGTCCCATAGGTAGAATGTTATGTCCACGACCAGATTAGATTGAAACC-----------CAATCCCAGGATTTT----TGCCAATTCGTGGTTTGAAAAT-ATCTGGGG----AGGGTTAT-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      423049 111 -   783054 --AGCGGAATCTGTGCTC----------ACGTCTTGCTCAAGTCCAG------CTGTAACTT--TGCTTTGGCTTTGCCGTGGTCTTTAGGTGGAAGCTGATGGTTTTGAGCTGAACTTGGC----AGGTTTTTG
i caePb3.Scfld02_62     C 0 I 73
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                57070  47 + 21540570 I
e caeSp111.Scaffold514   107730  31 -   141934 I

a score=0.000000
s ce10.chrX             1218750 2 + 17718866 CC
e caePb3.Scfld02_62      423160 73 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                57070 47 + 21540570 I
e caeSp111.Scaffold514   107730 31 -   141934 I
e caeRem4.Crem_Contig24  315472 0 +  1162296 C

a score=-2828.000000
s ce10.chrX             1218752 35 + 17718866 TAAAAGCCTGATATCCTATAGCCCAAACCGTCGGG
s cb4.chrX                57117 14 + 21540570 ----------------TGTAAGTATGATGT-----
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig24  315472 28 +  1162296 ------CCTGCT-TCTCATAGCGAAAAGGTTCAAG
i caeRem4.Crem_Contig24 C 0 I 139
e caePb3.Scfld02_62      423160 73 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   107730 31 -   141934 I

a score=-74.000000
s ce10.chrX             1218787 26 + 17718866 ACTGAGCATTATGGCCTAAAAAAATC
s cb4.chrX                57131 14 + 21540570 --------TGAAGGcctcaaaa----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      423160 73 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   107730 31 -   141934 I
e caeRem4.Crem_Contig24  315500 139 +  1162296 I

a score=-4796.000000
s ce10.chrX             1218813 68 + 17718866 CTCCAAGCTAAA------------------ATGTAAGAGCCAACGCTATGAAAAAAAACTAGTGTAAAATGGAAAAAAAACTACAG
s cb4.chrX                57145  8 + 21540570 ----aagttgaa--------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      423233 85 -   783054 CTCAAAGCTAAGGAGGAATCCGCGGCGAACaaccaaaaataaagaatttcgTCAAAAGTACGTGAAACACGGTGAGCAAA-GATAG
i caePb3.Scfld02_62     I 73 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   107730 31 -   141934 I
e caeRem4.Crem_Contig24  315500 139 +  1162296 I

a score=-3285.000000
s ce10.chrX             1218881 12 + 17718866 T-------------------------------AAAACTGTAT-G
s caeRem4.Crem_Contig24  315639 10 +  1162296 --------------------------------TGAAGTCTTT--
i caeRem4.Crem_Contig24 I 139 C 0
s caePb3.Scfld02_62      423318 43 -   783054 TCTTAACTTTCACACAAGCATCCCACccactcaaaaatgtttc-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                57153  0 + 21540570 C
e caeSp111.Scaffold514   107730 31 -   141934 I

a score=17838.000000
s ce10.chrX             1218893 47 + 17718866 AAAAACT-------------------CACGATTTTTTCTGGTCTCAATCTTGGGCGTCGTAAGAAT
s cb4.chrX                57153 47 + 21540570 aaaaaca-------------------tacaattttttcttgctttaACTTTTGGACTTGGTGGAGT
i cb4.chrX              C 0 I 10205
s caeRem4.Crem_Contig24  315649 47 +  1162296 TGAAACT-------------------CacgattttttcttgtttcaatcTTTGGCGTCGTAAGAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   107761 47 -   141934 aaaatct-------------------tacgattttttttggtttcaactTCTGGTTTCGAGAGACT
i caeSp111.Scaffold514  I 31 C 0
s caePb3.Scfld02_62      423361 65 -   783054 -aaatttttgagctatACCCCAGACATACAGTTCTTCCTGGTTTCAATCTTGGGCGTTGTAAGAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=30622.000000
s ce10.chrX             1218940 145 + 17718866 -----------------CCCGTCGCTCGCCCCCGCGTCTTCAATCACGTTTGATTGGAAAAATCCGCTACGAGAGTTGCCTTTCCTTCCGAAAACAATTCCCTTCCAGACTTGTGTTGTGCTCCGTTCGATAACCT----GCAAAGACGGCATTTCGTTCAATT--TT
s cb4.chrX                67405 140 + 21540570 ---CTCGCTGTTCT--GCACTTgattc---tcctcttcttttacAGCTGACGATCGGAAAAATCCGCTCCgtgaatttccttttttcccaaaCACAACTCCTTTGAAGACCGCTGAGTTGCAACGTTCTACAACCT----GAAAACAATCGT----------------
i cb4.chrX              I 10205 C 0
s caeRem4.Crem_Contig24  315696 160 +  1162296 ---CTCCTCGTTCTTATCTCTTGTCTC--TTTCTGCTCTTCAATaacttttgattgaaaaaatccgCCCCGCGAATTTCCTTTCCGTCCAAACACAATTCCCTTCCAAACTTCCGAAGTACGACGTTCTATAACCTGcaaggaaaaaatgggaat-gttgagtttt--
i caeRem4.Crem_Contig24 C 0 I 40
s caeSp111.Scaffold514   107808 151 -   141934 TGATTTGCAATTGTC-TACCGTG-------TCCTCTGCTTTGatgattttcgatttgaaaaatccgcTACGCgagtttccttttcttccaaagACAATTCCTTTCCACGTATCTGGAGTGCAACGCTCTATAACCT----AAAGAAGAGAGGTTC-TTTTTATT----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      423426 148 -   783054 TTCTTCACTGTTATCTTTCCGT-----------TCTTCCTCAAtaacttttgattgaaaatatcCACTTCTTGAGTTTCcttttctcccaaaaacaATTCCTTTCCACGTTTCAGGTGTACCACGCTCCacgacct----gaaaaaataaaatat-ttactCTC----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-7475.000000
s ce10.chrX             1219085 42 + 17718866 ATACAAAATTTGTGCTCAAAAAGTAACGTCG-TTTTTGTAGGT
s cb4.chrX                67545 28 + 21540570 -TTTTGAA---GTCATTAAAGTGTTACTCGTT-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   107959 26 -   141934 GAACTG-----Gtgaataaaaaggaaaattt------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      423574 18 -   783054 TTAC-------------AAAAAGTTGAAGCC------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  315856 40 +  1162296 I

a score=58367.000000
s ce10.chrX             1219127 138 + 17718866 TCGAAAAACAAACAA----------CAAGT-GTGCAAACATTATTACTCACCCAAACTTGGTCACCTATCGATAAGCTCAGCTCGTTTGCTTCAACACCACAAAAGTCCTCAACTGCTACAGCATTGGTGAACGTGTGGAAGTCTGGAA
s cb4.chrX                67573 125 + 21540570 -------------AGA---G-----TCATA-CTTCAAACA--TTTACTCACCCACACACGGTCTCCTTTTGATAGGCTCAACTCGTTTGCTTCAAAACCACAATAATCTTCTACTGTTATAACATTTGTGAATGTttggaagtctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  315896 141 +  1162296 tcaaaaaacaaatagatGTG-----TGATA-GATCAAACA--ATTACTCACCCACACTTGGTCGCCTTTTGATAAGCTCAGCTCGTTTGCTTCGACACCACAATAGTCTTCAACAGCTATCGCATTGGTGAACGTGTGGAAGTCTGAAA
i caeRem4.Crem_Contig24 I 40 I 258
s caeSp111.Scaffold514   107985 143 -   141934 ----cagaaaaacaaatatgaaTCCATGTTGGAGTAAACA--ATGACTCACCCAGACGTTGTCGCCTTTTGAAAAGCTAAGTTCCGTCGCTTCTACCCCTAAAAAATCTTCTACTGCTGTCGCATTAGTGAACGTGTgaaagtctgaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      423592 134 -   783054 -------ACAAGGAAATGTG-----TTGTT-GAATAAACA--ATTACTCACCCACACTTGGTCACCCTTCGATAAACTGAGTTCGTTTGCTTCAACACCACAAAAGTCGGTAATAGCTATCGCATTAGTGAATGtggcaaaatctgaaa
i caePb3.Scfld02_62     C 0 I 1761
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=273.000000
s ce10.chrX             1219265 1 + 17718866 A
s cb4.chrX                67698 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   108128 1 -   141934 a
i caeSp111.Scaffold514  C 0 I 922
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  316037 258 +  1162296 I

a score=168.000000
s ce10.chrX             1219266 4 + 17718866 AGTC
s cb4.chrX                67699 4 + 21540570 attc
i cb4.chrX              C 0 I 751
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   108129 922 -   141934 I
e caeRem4.Crem_Contig24  316037 258 +  1162296 I

a score=0.000000
s ce10.chrX             1219270 662 + 17718866  
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                67703 751 + 21540570 I
e caeSp111.Scaffold514   108129 922 -   141934 I
e caeRem4.Crem_Contig24  316037 258 +  1162296 I

a score=6269.000000
s ce10.chrX             1219932 154 + 17718866 GTGTGAAAAGATGTCAAAAAGCCAACGCGAGTTGAGGAAGAA--GAAGAACTGGTTCTTCTTTTCGTTTGCTGCCTCAAGGT-----GAATTGCGGCATTTGATGCATTTGAATGCAAACAATCATCAGTGATGCATATGGCCGATATGCCTATCAGTTTT
s caeRem4.Crem_Contig24  316295 146 +  1162296 GTGTGAAAAGATCTCAAAAAGCTATGGTGGGGCTATGACAGATGGGAGAACTGGTTTACC----------CCACTTCAAGGCAAAGCGAATTGCGGCATTTGAAGCATTCGAATGCAAACAATCACC---TATGCATAAG--CGATATGCCTATCAGTTTT
i caeRem4.Crem_Contig24 I 258 I 1089
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                67703 751 + 21540570 I
e caeSp111.Scaffold514   108129 922 -   141934 I

a score=0.000000
s ce10.chrX             1220086 2260 + 17718866  
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                67703  751 + 21540570 I
e caeSp111.Scaffold514   108129  922 -   141934 I
e caeRem4.Crem_Contig24  316441 1089 +  1162296 I

a score=3827.000000
s ce10.chrX             1222346 127 + 17718866 AATTTCTTA---GGTTACACAAGTCCACATAAAGACCACAAATAGTAAAAGAGGGGGATTAACATCTCTCAAAAAACCAACAAATATTCGATTTCTCAAACATCGATCAAACagaaacagaaagagagag
s caeRem4.Crem_Contig24  317530 104 +  1162296 AATTACCTAAATGGTTACGCAAGTCCAAATAGCGAACACAAATA-----------GGATTAGCA--TctcaaaaaactaacaaagaTTCAATTTC-CAAACA-CGATCGGAAAGAAACG-----------
i caeRem4.Crem_Contig24 I 1089 C 0
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                67703 751 + 21540570 I
e caeSp111.Scaffold514   108129 922 -   141934 I

a score=-18.000000
s ce10.chrX             1222473 13 + 17718866 agagagagcaaga
s cb4.chrX                68454  3 + 21540570 ----------AGA
i cb4.chrX              I 751 C 0
e caePb3.Scfld02_62      423726 1761 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   108129 922 -   141934 I
e caeRem4.Crem_Contig24  317634  0 +  1162296 C

a score=-445.000000
s ce10.chrX             1222486 17 + 17718866 gacaaaaagagGAATAG
s cb4.chrX                68457 13 + 21540570 ----GATAGAAGAAAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  317634  2 +  1162296 ---------------AC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      425487 17 -   783054 GGCGAAAAGAAGTGAAG
i caePb3.Scfld02_62     I 1761 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   108129 922 -   141934 I

a score=16364.000000
s ce10.chrX             1222503 130 + 17718866 GAGGGGTGT----CTGTTGGGTTTTG-CCGCCAAAATCAATAAATAACGAATGGTGTGTGCAGATGGTGCGCGCGAGGGGTGACCGTGAACTTTT------------C-------------------GGCATACACACTGTCCGCC-------------------CAGACGGACGACGGCAG-----AGA----
s cb4.chrX                68470 129 + 21540570 AAAGGGTGTTGCGGGAGGAGGTTTCGTCCGTTTGAATCAATAACTGACGAATGGTGTGTGCAGAT-------------GGTGACCGTGAACTTGC------------AGCCA---------------GTCATACTCAGTACAGGAC--------------------ACACTGTCGGAGGGAG-----GGCAATG
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig24  317636 132 +  1162296 GACGGGGGT----GTATTGGGTTTTG-CCgccaaaatcaataaataacgAATGGTGTGTGCAGAT-------------GGTGACCGTGAACTTCC------------CCCCG-------------TCGTCATACACACTACCCCACAGTCA--------------GAGACAGTcggagagag-----ggggaga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   109051 155 -   141934 GAAAAGTAT----GTGTTGATCTTGG-TAACCAAAATCAATATATAATGAAGAATGTGCGCAGAT-------------GGTGACCGTGAACTTGccattctttctctctctccctctctctttccttgTCTCACTCACT--------CGCATTGAGG--------CACACGGTCCGAAAAAG-----ACAGACA
i caeSp111.Scaffold514  I 922 C 0
s caePb3.Scfld02_62      425504 152 -   783054 GAGGGAGAT-----TGCCG-----------ccaaaatcaata-atgacGAATGGTGTGTGCAGAT-------------GGTGACCGTGAACTTGC------------CTCTCATTCCCTCTTTCTTTGTCATACACACTGTCCGGCAAGCGGAGAGGAGGGTAGACAGGCCCTCCGGACACACACCCACACGCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=3951.000000
s ce10.chrX             1222633 24 + 17718866 ---CACATTTTACCACCT----------CACCCT---CTC
s cb4.chrX                68611 27 + 21540570 --CAACGTTTTACCACCT--------TCCACCATTTC---
i cb4.chrX              I 12 I 537
s caeSp111.Scaffold514   109206 34 -   141934 TACAACGTTTTACCACCTTTCGTCTGTTCACCAC------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      425656 26 -   783054 CACAACGTTTTACCACCT--------TCCACCAC------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  317768  0 +  1162296 C

a score=1584.000000
s ce10.chrX             1222657 8 + 17718866 GCGCATAT
s caeSp111.Scaffold514   109240 8 -   141934 TTGCATAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      425682 8 -   783054 TTGCATAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeRem4.Crem_Contig24  317768 0 +  1162296 C

a score=987.000000
s ce10.chrX             1222665 17 + 17718866 CCTCAATTAATTACAAT
s caeSp111.Scaffold514   109248 15 -   141934 --TCAATTAATAACAGT
i caeSp111.Scaffold514  C 0 I 357
e caePb3.Scfld02_62      425690  0 -   783054 C
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeRem4.Crem_Contig24  317768  0 +  1162296 C

a score=0.000000
s ce10.chrX             1222682 1170 + 17718866  
e caePb3.Scfld02_62      425690    0 -   783054 C
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638  537 + 21540570 I
e caeSp111.Scaffold514   109263  357 -   141934 I
e caeRem4.Crem_Contig24  317768    0 +  1162296 C

a score=478.000000
s ce10.chrX             1223852 69 + 17718866 GTACAAACACATGCGTTTTACCACCTCTC---------------CAGTGCCCCGTTTACCCAC--ACCCCCCCCCCTGCGCATACC
s caeRem4.Crem_Contig24  317768 82 +  1162296 gtGCGCGCACA-ACGTTTTACCACCTTTCGCCATTTCCTCCCCTCTTTTCCTCGTCTTGTCACCAAGACCACCACTTGCATAT---
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      425690  0 -   783054 C
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109263 357 -   141934 I

a score=16202.000000
s ce10.chrX             1223921 283 + 17718866 CCAATTAATAACAG---TCTCT-----------TTCAACGTTTATTGTACTGAACG------CAT---GAACAATAGGTGTGGGGAAGACAATAGGTTGTGGGGGAGAAATGACGTGTCTGGGCGAATATGTTGATTTAACGTTTT----CTACAAA------CCGG-AGAAGAAACAGA-----------GAGAAAGAGCGACAT-----------ACGGAGCGCGCGGCAAGGAAAACCGCAAAAAGCATCTCTCAAAAATTGTGTATGAATGATTGATGATTAATACGCGGT----TTTTTGATCC----------ATTTATTGCTTGGT--------------------GATGGATTGCGAAAATGTGG
s caeRem4.Crem_Contig24  317850 324 +  1162296 CCAATTAATAACGG---TCTCTCTTCTG-----TTCAACGCTCATTGTACTGCGGGAAACATAAT---GAACAATgggtgagaagaagaaggtag-----aaaagaagaatgatgtGTT---GCGCATATGTTGATTTAACGTTTT----CTTCAAA------CCGGAGGAAAAGATAAAGAGACGAACAGAAAGCAGGGGGAGATGGAAAGAGGACACGGAGCGC--------GAAACCcgcaaaa--------ccaaaaatt-tttatgaatgaTTGATGATTAATACGTccctggtttttttttcttctttgataCATTTATTGTTTGATCGAACCCgtcgattttt---gatgaatttttacAACGGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      425690 300 -   783054 CCAATTAATAACAGTATTCTTTTCTCTGCACTCTTCAACATTTGTTGTACTGTCCGAAATATAATGAAGAACAATGG-------AAAGGGGGT----------TGAAGAATGATGTGTT---GCGCATATGTTGATTCAACGTTTTCTTCCTTCAAGCCCTGTCCGGTATAAGAAACGGA-AAACGTCTAGAGGACGGAGAGGAAT-CACAAAAGAGATGGA-------------AACCCCTTACAA------------------TTTATGAATGATTGATGATTGTAACGTCCC----TTTTTATTGCACTATG----TTTTattgttcgat------------tttttatcgatgactttgaaaaatgggg
i caePb3.Scfld02_62     C 0 I 513
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109263 357 -   141934 I

a score=1171.000000
s ce10.chrX             1224204 63 + 17718866 TGAATATGGTG-ACAGCTTGTGGTACGGTGAGTGGTATTGTGAAAagagagagagagagagaga
s caeRem4.Crem_Contig24  318174 60 +  1162296 TGAAGGAATTGTCCGGCTCTTGGTATTGTGGGTG----TAGGAAAAGAGTGGGCGATAGGAAAA
i caeRem4.Crem_Contig24 C 0 I 619
e caePb3.Scfld02_62      425990 513 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109263 357 -   141934 I

a score=0.000000
s ce10.chrX             1224267 1165 + 17718866  
e caePb3.Scfld02_62      425990  513 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638  537 + 21540570 I
e caeSp111.Scaffold514   109263  357 -   141934 I
e caeRem4.Crem_Contig24  318234  619 +  1162296 I

a score=789.000000
s ce10.chrX             1225432 36 + 17718866 ACTCCCATTGAATGCCCATCACATTCAGGAAAAAAT
s caeRem4.Crem_Contig24  318853 36 +  1162296 ACTCCAATTAATTTCGTTCTctacacagaaaaaaaa
i caeRem4.Crem_Contig24 I 619 C 0
e caePb3.Scfld02_62      425990 513 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109263 357 -   141934 I

a score=478.000000
s ce10.chrX             1225468 33 + 17718866 A----GAGAAAAAAGAAACAACCAATACATTTTCTGC
s caeRem4.Crem_Contig24  318889 35 +  1162296 actcgaaatggAAAGAAACAACAAACACTTTGTGT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   109620 28 -   141934 -----AGAATGAAAGGAAC-ACAAACACTGTGTT---
i caeSp111.Scaffold514  I 357 C 0
e caePb3.Scfld02_62      425990 513 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I

a score=14154.000000
s ce10.chrX             1225501 77 + 17718866 AACACAGATTAATTGTGTGTTTAGTTCTAGTTCTTTT---------CATAAGCTGTGTTAATACCCGAGAAATTAC-GACACACAAG-
s caeRem4.Crem_Contig24  318924 72 +  1162296 -----AGATCAATTGTGTA-TTACTTGTAGTTTTTTCTC-------CATAAGCCGTGTTAATACCCTAGGAATTAG---CACAGAAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   109648 78 -   141934 ----CAGATTGATTGGGT--CTTGTTGTAGTTCCTCTTATAATATGTATAAGCTGTGTTAATACCCAAGGAATTAC---TATATGAA-
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      426503 79 -   783054 AGTACAGATTAGTTGTGT--TTAGTTGTAGATGGTCATAC------CCTAAGCTATGTTAATACTCGAGGAATTACCAACACACGAG-
i caePb3.Scfld02_62     I 513 I 256
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I

a score=767.000000
s ce10.chrX             1225578 24 + 17718866 TGAGTGTG-------GTGTGAAAATGAATGT
s caeRem4.Crem_Contig24  318996 21 +  1162296 ----------TAAGAGTGTGAAAATGAGGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   109727 29 -   141934 --AGTGCGGGGAAAAGTAGGAGAGTGAGTGT
i caeSp111.Scaffold514  I 1 I 69
e caePb3.Scfld02_62      426582 256 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I

a score=182.000000
s ce10.chrX             1225602 2 + 17718866 AA
s caeRem4.Crem_Contig24  319017 2 +  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 183
e caePb3.Scfld02_62      426582 256 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109756 69 -   141934 I

a score=0.000000
s ce10.chrX             1225604 509 + 17718866 ATACTCAAAATGTTCAGATTTTTTTTGGGAGCAAATTTTGAGAAGTGCTCATTTTTTAAATATAGTTTTATTACCGAAACGGGGGTAACATTTTTTGATTTTTAAACTTTCGCGAATAATTCAGTGTTTTTTAAAACTGAAACACAATATTCTTAGTCCAAAAATTAGATGGTTTTTATTCAGTCTTCGGGTTAAACAAAAATTGCATTACTTGGAATTAAACATTTTTAACTTAAAAGTGGTACCGTAGTCCTTTTTTGAAAAAAAACCAAAAAGTGAGTAGGTGTACAAGGCTCTTTAAAAATATCTACAAAAATTAAGAAAAACAAAAAATTTTTGGTTCTAGAAATTTCAGAGGAAATTTTGGCAATCAGTGTTAGCTATGTGAGTATATTTTAATGAAATACATGAAAGAAAATAATTTTTCAAAAGTGAACCAATAGTTTTGCATATAATAATTATGATTTTTTGGAATCCCTCAcccccccccccccccccccctccTCTTC
e caePb3.Scfld02_62      426582 256 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeSp111.Scaffold514   109756  69 -   141934 I
e caeRem4.Crem_Contig24  319019 183 +  1162296 I

a score=316.000000
s ce10.chrX             1226113 13 + 17718866 TCAAAACCCTCAC
s caeSp111.Scaffold514   109825 10 -   141934 TCAAAA---TCAT
i caeSp111.Scaffold514  I 69 C 0
e caePb3.Scfld02_62      426582 256 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeRem4.Crem_Contig24  319019 183 +  1162296 I

a score=3830.000000
s ce10.chrX             1226126 60 + 17718866 AGCTGTCACAATGAATACCCATCAACGTCCCATTATACATATTCTTGTTTC--AAATATT--CA
s caeRem4.Crem_Contig24  319202 52 +  1162296 AACCGTCACTATTAATTTC-----A---ATCAACTCATAATATcttgtttc--aaatattca--
i caeRem4.Crem_Contig24 I 183 I 43
s caeSp111.Scaffold514   109835 50 -   141934 GGCTGTCACTATAAATCTA----------TCAATTCAcgttatttcatttttgcaaTGTT----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      426838 55 -   783054 AACTGTCACAACGAATACAACTCAA---CTCATTCCAAATTATCTTGTTTC--CAATATT----
i caePb3.Scfld02_62     I 256 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I

a score=-1418.000000
s ce10.chrX             1226186 21 + 17718866 ACACATGC-----------------ACCTATGACAACA
s caeSp111.Scaffold514   109885 24 -   141934 -TATATGC-------------AATACAATAATAGACCT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      426893 37 -   783054 -CATATCCTCCCTCCCGTTTTAATAATATCTGACACTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                68638 537 + 21540570 I
e caeRem4.Crem_Contig24  319254 43 +  1162296 I

a score=-2791.000000
s ce10.chrX             1226207 17 + 17718866 ---GATGATCATC-ATCACCT
s cb4.chrX                69175 11 + 21540570 ---GACGCTCATCA-------
i cb4.chrX              I 537 C 0
s caeSp111.Scaffold514   109909 13 -   141934 AAAAATAATGATC--------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      426930 13 -   783054 TGCCATATGTATT--------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  319254 43 +  1162296 I

a score=79364.000000
s ce10.chrX             1226224 129 + 17718866 AGACTCACTTTTCAGCAGAAACCGGATCTCCTTATACGTTATTGGATTGCGACTGCTATTCTTTTTAGCCCATGCGTAGGCTGTCAGTCCGTCAGAGTTTGTAATGTTGATATCGATTCCGGACTGGAA
s cb4.chrX                69186 128 + 21540570 -AACTCACTTTTCAGTAAAAACCGGATCTCCTTGTATGTTATTGGATTTCGACCGCTTTGTTTTTTAGCCCACGCATAAGCTGTCTGTCCGTCTACATTTGTTATGTTGACGTCAATTCCAACCTataa
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig24  319297 129 +  1162296 aaactcactttttagCAGAAACCGGATCTCCTTGTATGTTATTGGATTCCGGCCACTAttttttttGGCCCATGCGTAAGCTGTCAGCCCATCTGAATTGGTTATAGTGGCGTCGATTCCAGTCTGAAG
i caeRem4.Crem_Contig24 I 43 C 0
s caeSp111.Scaffold514   109922 128 -   141934 -GACTCACTTTTTAGCAAAAACCGGATTTCCTTGCATGTGATTGGATTTCGattactattttttttagccCACACAAAAGCGGTTAATCCATCAGTGTTCGTGATAGTAACATCAATTCCggactgaaa
i caeSp111.Scaffold514  C 0 I 50
s caePb3.Scfld02_62      426943 128 -   783054 -AACTCACTTTTTAGCAGAAACCGGATTTCCTTGTACGTTATTGGGTTACGGCTGCTAttttttttAGCCCACGCATAAGCAGTTAAGCCGTCAGAATTGGTTATGGCGACGTTGATTCCTGACTGCAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-429.000000
s ce10.chrX             1226353 6 + 17718866 AAAAAA--
s caeRem4.Crem_Contig24  319426 6 +  1162296 TTAAAG--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      427071 6 -   783054 --AAAGGA
i caePb3.Scfld02_62     C 0 I 410
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69314 35 + 21540570 I
e caeSp111.Scaffold514   110050 50 -   141934 I

a score=182.000000
s ce10.chrX             1226359 2 + 17718866 TT
s caeRem4.Crem_Contig24  319432 2 +  1162296 TT
i caeRem4.Crem_Contig24 C 0 I 683
e caePb3.Scfld02_62      427077 410 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69314 35 + 21540570 I
e caeSp111.Scaffold514   110050 50 -   141934 I

a score=0.000000
s ce10.chrX             1226361 2494 + 17718866  
e caePb3.Scfld02_62      427077  410 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69314   35 + 21540570 I
e caeSp111.Scaffold514   110050   50 -   141934 I
e caeRem4.Crem_Contig24  319434  683 +  1162296 I

a score=-322.000000
s ce10.chrX             1228855 4 + 17718866 AGGC-
s caeRem4.Crem_Contig24  320117 4 +  1162296 -AGCC
i caeRem4.Crem_Contig24 I 683 C 0
s caeSp111.Scaffold514   110100 4 -   141934 -AGCT
i caeSp111.Scaffold514  I 50 C 0
e caePb3.Scfld02_62      427077 410 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69314 35 + 21540570 I

a score=55483.000000
s ce10.chrX             1228859 130 + 17718866 ACTTACATTCAGCAAAAACCGAACAACTTGAACTTGTCCAGAGCCAGCTGCCATGTGAAGAGCCGACCCGCTTTCTGTCACAAAATTCAAATCCCAATTGTGTTGAAGTAACATTGATAAAATCTGGAAA---------
s cb4.chrX                69349 130 + 21540570 ACTCACTCTCAATAGGAAGCGGACCACCTGAATTTGTCCGGCTCCGGCTGCCATGTGTAGTGCTGATCCACATTTTGTAGTGAAATTTACATCCCAATTGTTACAAAGCAAAAGTGAAATGATCTATaaa---------
i cb4.chrX              I 35 I 71
s caeRem4.Crem_Contig24  320121 130 +  1162296 ACTTACTTTTAATAAAAACCGCACAACTTGTATTTGACCAGACCCTGCCGCCATATGAAGTGCCGACCCGCTCTCAGAGGTGAAATTCAAGTACCAGTTATTGTCGAGTAATAAGGAAACAACCTGGAAA---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   110104 133 -   141934 ACTTactttcaataaaaatctCACAACTTGAATATGTCCATTTCCGGCAGCTACATGTAGCGCTGATCCAACTTCTGTTGAAAAGTTCAAGTTCCAGTTCTCATTGAGTAGCAAAGAAACAATCTGTAGGAA------A
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      427487 139 -   783054 ACTTACTCTCAACAAAAACCTCACAACTTGAATTTGTCCATTTCCAGCTGCCATATGCAGTGCTGAACCGTTGTCGGTTGTAAAATTCAAATCCCAGTTGTTATGAAGCAACATTGAtagaatcttgaaaaaagtcatA
i caePb3.Scfld02_62     I 410 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-13694.000000
s ce10.chrX             1228989  44 + 17718866 TTTAATTTTAGCC--TAGATTTCTAG-------------------TAAGCTGAAAATTTTGCCAA----------------------------------------------------------
s caeRem4.Crem_Contig24  320251  47 +  1162296 -TTAATGCAAATAGATGAAGTTGttc--------------tgttttgaa----ataattttgagaa---------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold514   110237 121 -   141934 ATTAACATTATTCAATGATATTATACCAGCTTTCAA--GATGTTTTCAACAGGACAATTTGCTAATCAGTGTAAATACCGTTCTATGATGAGGTGCAAGAAGaattttgatcattttttacTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      427626  80 -   783054 GTTAATATTAGTC----GTTTTATGC------TCAATCGGaatcttcaatttgaaaaatttcaagtcaAGCTAG--------------------------------TCGACCA-GTTCAACTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69479  71 + 21540570 I

a score=49209.000000
s ce10.chrX             1229033 118 + 17718866 ACCTGAACTTGACCACTTCCAGCCGCCAGGTGGAATGCCGAAGCTGTGTGGAGATGGTCCATATATTGGAAATTGATCTTTCTTAGGCCACAGCTGAATAATCGCTCCAGCATCTGAA----
s cb4.chrX                69550 118 + 21540570 ACCTGAACCTGCCCAGTCTCCGCTGCCAAATGTAATGCTGAGGCTGTATGAACATTATCCAAACTTTGGAagctttgttttttcaaaccgCAGTTAAAAAGCCGTTTGACCATCTGAA----
i cb4.chrX              I 71 C 0
s caeRem4.Crem_Contig24  320301 118 +  1162296 acCTGAACCTGACCACTATCTGCTGCAAGATGTAGTGCAGACGCAGTATGAAAGTAGTCCATACATTGGAAGTTAATTTTCTTTAAACCACAAATAAACAATCTTTCCAACATCTGAA----
i caeRem4.Crem_Contig24 I 3 I 31
s caeSp111.Scaffold514   110358 117 -   141934 ACTTGAACTTGCCCTGCTTCGGCTGCGAGGTGTAGTGCTGAAGCTGTATGGAAATGATCTAAATATTGGAAATTTATCTTCTCCAATCCACAATTGAAAAGACGGTTCAGCATCT-----Aa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      427706 122 -   783054 ACTTGGACCTGTCCAGTCTCAGCTGCCAAGTGCAAGGCAGAAGCAGTGTGAAAGTAATCTAGAATTTGAAAAGCCGTCATTTTCAAACCACAATTGAACAATCTTTCTAACATCTGCaacat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=1396.000000
s ce10.chrX             1229151 11 + 17718866 ATTTCCTGTTT
s cb4.chrX                69668 10 + 21540570 ATGTCTCATT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   110475 11 -   141934 acttcatattt
i caeSp111.Scaffold514  C 0 I 25
s caePb3.Scfld02_62      427828 11 -   783054 atttctttttt
i caePb3.Scfld02_62     C 0 I 26
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  320419 31 +  1162296 I

a score=0.000000
s ce10.chrX             1229162 5 + 17718866 AGCAA
e caePb3.Scfld02_62      427839 26 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69678 0 + 21540570 C
e caeSp111.Scaffold514   110486 25 -   141934 I
e caeRem4.Crem_Contig24  320419 31 +  1162296 I

a score=-2813.000000
s ce10.chrX             1229167 145 + 17718866 TGCAAGAGGTAGGTAGtagggcatccatacaggcggcaaaagaactgccgtgtctatctcgtgccgcaaaccgcgcctcttgtatggtacgacgcaaaaccgaaaggtgtcggccgcgttgaaagatcaactttttgcactatga
s cb4.chrX                69678  31 + 21540570 -----------------------------------------------------------------ACAAACAGCTCGGACTGGATGTT-------------------------------------------------CACTATTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      427839  26 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   110486  25 -   141934 I
e caeRem4.Crem_Contig24  320419  31 +  1162296 I

a score=0.000000
s ce10.chrX             1229312 102 + 17718866 ggtataaacactaagctttttgcatctcgccatagtgcaaaaataagtgcagatatttggcaggcgtccggtcttgaaaccgcgcctccttcccTAGTAGGT
e caePb3.Scfld02_62      427839  26 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69709   0 + 21540570 C
e caeSp111.Scaffold514   110486  25 -   141934 I
e caeRem4.Crem_Contig24  320419  31 +  1162296 I

a score=248.000000
s ce10.chrX             1229414 5 + 17718866 AGCAA
s caeRem4.Crem_Contig24  320450 5 +  1162296 AGGAA
i caeRem4.Crem_Contig24 I 31 C 0
e caePb3.Scfld02_62      427839 26 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69709 0 + 21540570 C
e caeSp111.Scaffold514   110486 25 -   141934 I

a score=546.000000
s ce10.chrX             1229419 1 + 17718866 A
s caeRem4.Crem_Contig24  320455 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   110511 1 -   141934 A
i caeSp111.Scaffold514  I 25 C 0
s caePb3.Scfld02_62      427865 1 -   783054 A
i caePb3.Scfld02_62     I 26 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69709 0 + 21540570 C

a score=60453.000000
s ce10.chrX             1229420 102 + 17718866 CCTTTTCTTGTCCATATTCACATGCCAAATCGAATGGTGTTCTTCCACTTCTGTCAACTAAACAAATGTCTGCATGGTAGTAGATGAGTAGGTTAAACTGAA
s cb4.chrX                69709 102 + 21540570 CTTTTTCTTGGCCATGTTCGCAAGCCAAATCAAACGGTGTTCTGCCTGCTCTATCCACCGAGCAAATATCCACATGATAGTAGACGAGTAAATTAAACTTAA
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig24  320456 102 +  1162296 CCTTCTCCTGCCCTTGTTCACAAGCTAAATCAAACGGTGTCCTTCCAGCTCTATCCACAGAACAGATGTCCGCATGATAGTAAATAAGAAggttgaactgaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   110512 102 -   141934 CTTTCTCTTGGCCATGCTCACAAGCCAAGTCAAACGGTGTTTTGCCAGCTCGGTCGACCGCACAAATATCAGCATGGTAATAGATCAAGAGATTAAACTAAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      427866 102 -   783054 CCTTTTCTTGTCCGTGCTCACAGGCTAAATCAAATGGAGTCCTCCCTGCTCTGTCCACTGAACAAATATCGGCGTGGTAATAGATTAGAAGATTAAACTAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-773.000000
s ce10.chrX             1229522 2 + 17718866 AA-
s caeRem4.Crem_Contig24  320558 2 +  1162296 aa-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   110614 1 -   141934 -A-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      427968 2 -   783054 -AA
i caePb3.Scfld02_62     C 0 I 33
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69811 10 + 21540570 I

a score=-769.000000
s ce10.chrX             1229524 3 + 17718866 TTT-
s caeRem4.Crem_Contig24  320560 3 +  1162296 ttt-
i caeRem4.Crem_Contig24 C 0 I 28
s caeSp111.Scaffold514   110615 2 -   141934 --CA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      427970 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69811 10 + 21540570 I

a score=201.000000
s ce10.chrX             1229527 44 + 17718866 TTAATTCACTTTAATGAAATTACTTTGTTTTAAATTGAAACATT
s caeSp111.Scaffold514   110617 30 -   141934 TGAAGACGTGTTAATGAGATGTTTTT--------------CATT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      427970 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69811 10 + 21540570 I
e caeRem4.Crem_Contig24  320563 28 +  1162296 I

a score=0.000000
s ce10.chrX             1229571 354 + 17718866 TTTATACACCCTTAATTCTGTCATTATTAAAAAAAGCTTTAAAAAAACTTCCATTTTTTATAAACTTTACGTAACTTCTCAATTTTCAATTAATAAAGAATCCCTGATTTAACACAGTTTTCTGTTTTTTTTTTCAATTCGAAAAATCTAGAACTTTAGTGACTTTTTTTTTGAAAGGGTCTCAAAACAAAATAAAACTGACGCAGTTAATATATTTTCAGTCAGTGATAGAATAGTGTTTGAGATTTTTGGGAGCATAATTTATTAACATGCTGAATCCGAAAAAAGCAATAATTCATTACAAAAGTTTTTTATTTACCCATTTTTTTAAAAGATGGGGTCCCATAGAACTGA
e caePb3.Scfld02_62      427970  33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                69811  10 + 21540570 I
e caeSp111.Scaffold514   110647   0 -   141934 C
e caeRem4.Crem_Contig24  320563  28 +  1162296 I

a score=175.000000
s ce10.chrX             1229925 19 + 17718866 CACATAACTTTTC--CAATCC
s cb4.chrX                69821 21 + 21540570 CATGAAACTTTTCGGTAAATA
i cb4.chrX              I 10 C 0
e caePb3.Scfld02_62      427970 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   110647  0 -   141934 C
e caeRem4.Crem_Contig24  320563 28 +  1162296 I

a score=272.000000
s ce10.chrX             1229944 4 + 17718866 AAAA
s cb4.chrX                69842 4 + 21540570 AACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  320591 4 +  1162296 aaac
i caeRem4.Crem_Contig24 I 28 C 0
e caePb3.Scfld02_62      427970 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   110647 0 -   141934 C

a score=180.000000
s ce10.chrX             1229948 1 + 17718866 A
s cb4.chrX                69846 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  320595 1 +  1162296 a
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   110647 1 -   141934 A
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      427970 33 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=115781.000000
s ce10.chrX             1229949 461 + 17718866  
s cb4.chrX                69847 404 + 21540570  
i cb4.chrX              C 0 I 70
s caeRem4.Crem_Contig24  320596 405 +  1162296  
i caeRem4.Crem_Contig24 C 0 I 7
s caeSp111.Scaffold514   110648 412 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      428003 399 -   783054  
i caePb3.Scfld02_62     I 33 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-32006.000000
s ce10.chrX             1230410 228 + 17718866 GAAAAAAAGTGTTTTACTCCCAGAAAT----TATTTT---TTCTCAGttaaaaaatttttaagaa--------catatattt--------tacaattataaaaatGAAAAACTGAGCTTCTTTTCAAAAACCAAACAATCT------------------------------------------------CAATTTTCTGCTCCTATTTTAACAGGAGCACTGACCATGTCACTGACCAAGTATTTTT----TATACTGACCATGCCTAGAGTTGCTAAAATCCTTAA-------------ATTTTTATAAGAAATT
s caeRem4.Crem_Contig24  321008 149 +  1162296 -------------------GAATAAAT----catcggaaattttttttgaa---------aaaaa-------------------------ttgaatggc----TCACCTGATA------TGCTCGATGAA------AACCT------------------------------------------CCGTAATAATTTTCTGCTTGACATTTT----GTGTTGTACAAatgt----------------------tgttctga--------aaaaatggtaaTAT--ATGAA------------ATCTTTATTGAA----
i caeRem4.Crem_Contig24 I 7 C 0
s caeSp111.Scaffold514   111060 288 -   141934 GCAATAATTTA----ATACGTCCAAAT----TACCTGATATACTTGAAGAAAATCGTCTCAGAAGTTTTTTGCTATACATTCTTCCCTATCTAAACTTTAGAATTGATTGATAGAtctttgtttgaaaaa------aaactggactgaaatttaataatttgcatttagatatagttttaaactttgaacaattttttgttgaacatttt-------tttcgaaaatgtctCTAA--ATGGCTTAAAAAC-CGGGTTGAAAACG--TCAAAGAGCTGATAT--TTAAATCATTGAAAAGCATTTTCAACGAAAGTT
i caeSp111.Scaffold514  C 0 I 95
s caePb3.Scfld02_62      428402 159 -   783054 GAAGAAAACC------TGCGTAGAAGTTTTCTGcttgacattctgaaaaaa--------caggaa--------TATATA-----------CCGAATGTT-----------ATAGAAATTCGAgtaaaaca------aa---------------------------------------------------------------------------------tcgaaaaagttttgag--aagaatcaTTAACTCTTGTTGA--------CAAAtagtttattt--tta--------------attttcacaggaaatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70251  70 + 21540570 I

a score=-1851.000000
s ce10.chrX             1230638 34 + 17718866 ACGCCAAACTTGTTTTTTCCACTTTTGATGTTAA-
s caeRem4.Crem_Contig24  321157 11 +  1162296 -----------------------TCTGATGTTGA-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      428561  8 -   783054 ---------------------------attccaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70251 70 + 21540570 I
e caeSp111.Scaffold514   111348 95 -   141934 I

a score=-7118.000000
s ce10.chrX             1230672 48 + 17718866 TTCTGCCACATGATCTCACC---------CACCTG-ATATACTTGATGAAAACCTCCT
s cb4.chrX                70321 57 + 21540570 TTCTGTAATATAATCTTAACTGGAAAACGAACCTG-ATATACTGGATGAAAATCGTCG
i cb4.chrX              I 70 C 0
s caeRem4.Crem_Contig24  321168 39 +  1162296 -----AAATGTA---TTagc---aaaacaaattttcaaatgtttcagga--------G
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      428569 18 -   783054 -----------------agctgttattcaaatttc-----------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeSp111.Scaffold514   111348 95 -   141934 I

a score=-3385.000000
s ce10.chrX             1230720 22 + 17718866 AAGAAGTTTTTTGCTGGACATA
s cb4.chrX                70378 22 + 21540570 GAGAAGTTTTCTGCTCGACATA
i cb4.chrX              C 0 I 368
s caeRem4.Crem_Contig24  321207  7 +  1162296 GAAAAAT---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   111443 19 -   141934 -atgaagttttcgtTAAATG--
i caeSp111.Scaffold514  I 95 C 0
s caePb3.Scfld02_62      428587 15 -   783054 ---aaaacccgtATTAAA----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-14922.000000
s ce10.chrX             1230742  88 + 17718866 CCAAAAGAT---CTCTGCAAGTTTAACTAAATATTTAAAAAAAACCGAA-----------------TTCTAAAAAAGGATAAAACATCAAAAAC--------------------------TGCAGAAAGAAGCA-------------
s caeRem4.Crem_Contig24  321214 141 +  1162296 CCAGAAGATGGTTTTTCCAAGGGTGACAAAGTACActaatgcaacaaaaaaagtatgtttcaACTACTTGAAAAGAACATTGA------AAagctctctctctatttctctttgaTTCTGTACAAAAAGAACCTTTgcttagttttt
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514   111462  70 -   141934 --AACAAACG--TTTGCCAAACCT---------------------------------TCTGaactttccgaaaaaaaaattgtac----aATGC-------------------------GAAAAAGCAGAAGCACC-----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      428602  22 -   783054 -----------------------------------------------------------------------------------------AAAGC-------------------------GTAAGAAGAAAAGTTCT-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70400 368 + 21540570 I

a score=33258.000000
s ce10.chrX             1230830 187 + 17718866 TTTTCAAT------------CACAAAAATACACATTTT-TAGTGCACATCCCTTCTCCACTTGAGTACTTCCGCCAGAGAACGAA---AG-ACAGCAAAAGGTACGGGTGGATATTCGGGGGGTAGAGAGAGGGCGACGACTTTTGTGATAACAAAC------------------GAATGGAAATCTACGCAAATAATAC----AATCCACTTTTGCTATTTTTTT-
s cb4.chrX                70768 161 + 21540570 TTATCCAT--------------CAAAAACACACACAGTGCAGCACAT--------TCCACTTGAGTACTTCCGCCAGAGAACGAAAATGGGAAGACAAGAGAT--------------------TCGAGCGCCGGAGGCAATTTTTGTAACTGCA---------------------AAGAAGAAATCTGCGCAAACAatcaattggaat---tttcattaGATTTTTT
i cb4.chrX              I 368 C 0
s caeRem4.Crem_Contig24  321357 180 +  1162296 ttcaccaccaccac------cacaaaaATACACACATTTCAGTGCACA-------TCCACTTGAGTACTTCCGCCAGTGAACGAA---GGGAGGACAAGAGAT--------------------ATGAG----AGAGGCGATTTTAGTgataacaaaaagaaaacgatggaaatggaaaaagaaatctgCGCAAACAATAC----GAcc---tctcattatttttttc
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514   111532 167 -   141934 TTTGCTTTAGTTTTTCGGCCAACAAAAATACAC------TAGTGCACAT------TCCACTTGAGTAGTTCCGTCAGAAAACGAC---AGGA-TATAAGA-----------------------AAGAGACAGTGGGAGATTTTCTGTGATAACAAAAGAATAA------------CGATGAAAATTTGCGCAAATAATAC----GACc----ctcattatttttgt-
i caeSp111.Scaffold514  C 0 I 6
s caePb3.Scfld02_62      428624 139 -   783054 CTTTCCTT------------CACAAAAATACAC------TAGTGCACA-------TCCACTTGAGCACTTCCGCCAGAGAACGAA---AG------AAGA-----------------------TTGAGGCTAAGACATATTCGTTGTGATAACA-----------------------GTGGAAATCTGAGCAAACATTAC----GAcc---tctcattattttttt-
i caePb3.Scfld02_62     C 0 I 678
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-4395.000000
s ce10.chrX             1231017  7 + 17718866 --------GTGGCGG----
s cb4.chrX                70929  7 + 21540570 GC------------GGTGG
i cb4.chrX              C 0 I 245
s caeRem4.Crem_Contig24  321537 18 +  1162296 gcCCTTTTTTCATAGGAG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   111705  7 -   141934 --------ttggCAA----
i caeSp111.Scaffold514  I 6 C 0
e caePb3.Scfld02_62      428763 678 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=273.000000
s ce10.chrX             1231024 1 + 17718866 T
s caeRem4.Crem_Contig24  321555 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   111712 1 -   141934 T
i caeSp111.Scaffold514  C 0 I 280
e caePb3.Scfld02_62      428763 678 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936 245 + 21540570 I

a score=1448.000000
s ce10.chrX             1231025 26 + 17718866 ----TGTGGCTCAAGAAGATCAAGGAAAAC
s caeRem4.Crem_Contig24  321556 30 +  1162296 GTACGTTAGCCGAAGAAGATCAAGGAAAAC
i caeRem4.Crem_Contig24 C 0 I 353
e caePb3.Scfld02_62      428763 678 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936 245 + 21540570 I
e caeSp111.Scaffold514   111713 280 -   141934 I

a score=0.000000
s ce10.chrX             1231051 1082 + 17718866  
e caePb3.Scfld02_62      428763  678 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936  245 + 21540570 I
e caeSp111.Scaffold514   111713  280 -   141934 I
e caeRem4.Crem_Contig24  321586  353 +  1162296 I

a score=59.000000
s ce10.chrX             1232133 3 + 17718866 AAA
s caePb3.Scfld02_62      429441 3 -   783054 AAT
i caePb3.Scfld02_62     I 678 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936 245 + 21540570 I
e caeSp111.Scaffold514   111713 280 -   141934 I
e caeRem4.Crem_Contig24  321586 353 +  1162296 I

a score=4436.000000
s ce10.chrX             1232136 42 + 17718866 GAATAAAAATGTTAATTCTCAT-AAACGCCCTTTTCCTCTTCA
s caeRem4.Crem_Contig24  321939 38 +  1162296 GAACATAAGTGATAATTCTCACGAAACGCCCT----CCCTTC-
i caeRem4.Crem_Contig24 I 353 C 0
s caePb3.Scfld02_62      429444 32 -   783054 GAACATAAGTGATAATTCTCATAAAACGCCCT-----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936 245 + 21540570 I
e caeSp111.Scaffold514   111713 280 -   141934 I

a score=-3387.000000
s ce10.chrX             1232178 13 + 17718866 TCATCATCTCATT----
s caeRem4.Crem_Contig24  321977  4 +  1162296 -------------CATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   111993 14 -   141934 TTGTCTTCTCACTC---
i caeSp111.Scaffold514  I 280 C 0
s caePb3.Scfld02_62      429476  3 -   783054 -----------GTC---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                70936 245 + 21540570 I

a score=25364.000000
s ce10.chrX             1232191 76 + 17718866 GTTATCATTATTATGTTCCGTTTTCCAGATAA--GAGACCTTGAGA----TGAGATTTGAACAAG-GGAATTCGGACGCCCAA----
s cb4.chrX                71181 62 + 21540570 GTTAACATTATCATGTTCTGTTTTCCAGATAATAATGACCTTGAT-----TGCATTTCGCAGAAG-AG-------------------
i cb4.chrX              I 245 C 0
s caeRem4.Crem_Contig24  321981 74 +  1162296 GTTATCATTATCATGTTCCGTTTTCCAGATAATAAAGACCTTGAGA----TGAGATTTAAACAAG-AGA----GGACGCCCAA----
i caeRem4.Crem_Contig24 C 0 I 39
s caeSp111.Scaffold514   112007 77 -   141934 GTTATCATTATCTTGTTCCGTTTTCCAGATATTGAAGACCTTGAGATACGAGAGATTCTAACAAG-AGA----GGGAAAACG-----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      429479 81 -   783054 GTTATCATTATCGTGTTCTGTTTTCCAGATGATGAAGACCTTGAGAAA--ATAGATTTAAACGGGAAGA----GATGAAGTGATTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-1158.000000
s ce10.chrX             1232267 28 + 17718866 AATCTGTGTCTCTCCATCAATAAATGTG-----
s cb4.chrX                71243 21 + 21540570 -------GCCTTTTAATCATCATATCCG-----
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold514   112084 21 -   141934 ------------CCCATCTTCATATCCGTTTTG
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      429560 21 -   783054 ------------CATCTCTTCATATCCGTTATG
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e caeRem4.Crem_Contig24  322055 39 +  1162296 I

a score=22119.000000
s ce10.chrX             1232295 44 + 17718866 TATGTACATTTGTTGTCATGATCATTTGTCATATCATCTCACTT
s cb4.chrX                71270 41 + 21540570 TATGTACATACGTTGTC---GTCGTATGTGATATTATTCTATTT
i cb4.chrX              I 6 I 122
s caeRem4.Crem_Contig24  322094 41 +  1162296 TTTGTACATGTGTTGTC---ATCATCTGTCATCTTATTCTAttt
i caeRem4.Crem_Contig24 I 39 C 0
s caeSp111.Scaffold514   112106 41 -   141934 TTTGTATATGTGTTATC---ATCGTTTGtcattttattctattt
i caeSp111.Scaffold514  I 1 I 76
s caePb3.Scfld02_62      429582 41 -   783054 TTTGTACATGTGTTGTC---ATCCAATGTTATATTATCTCATTT
i caePb3.Scfld02_62     I 1 I 103
e caeJap4.Scaffold17966   56576 39230 -   140921 I

a score=-2288.000000
s ce10.chrX             1232339 339 + 17718866 CTTCGCAGGTGGTGACGAAAAGGGTCAG--TGCGATGTAAGGGGTGAATATGGGAA------------AATCTATGATTTATTTGAATTCACAAATTTTAATCTCATAAAACGATTGAGGAACAATAGGGGAATAGCTGAAAACTTTGGAAACTTGGAGTTTAGAACAAAAATATGTCTGTTCAGTAAATAAAACAAAATGGCAAAAT---AAACTTTTAAATTGAGTTTTGCACTGACCAAATGTTGAAACGCACTGACCAATTTTTTGAAAGCACTGACCTAATTTTAGAGCTAACTGACCAATTTAT-TTATTTAATTTTGCTGCTTAAACCAACTCATCAACTATCTGCATTG
s caeRem4.Crem_Contig24  322135 274 +  1162296 aaattcaattg-------aaaaggTTGGGATGGGTCGGAAGGAACGGATCTTGTGATGAAGTGTAGTGAAACTATCATTTATT---ACATACAAATT--------------------------GATAATGGAA--ATTGATAACATGGGAA--CAGGAAAGTAGAGTGGAAGCAAGTCTATGAATGAGGTTAAGAAGGTTTTCATGATTCCACAATTTTAAC-------------------AATAAGGATacgt---------ttttttg------------taatttcgtGTCAGAC--ATAAGTTTATATTCTTCAACATGacagatttccagaaaatatcAACT-CATGCggtg
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      429623 103 -   783054 I
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                71311 122 + 21540570 I
e caeSp111.Scaffold514   112147  76 -   141934 I

a score=-3723.000000
s ce10.chrX             1232678 64 + 17718866 TAAAGTTTTTAATTTTTCAAAATGACCAGTTCCAAAGTATCCAACTAAAGGTATATACCCCTTT
s caeRem4.Crem_Contig24  322409 35 +  1162296 -aaactctgaaaaaccTTCTAAGC----CTTTCatacaaa------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      429726 57 -   783054 tatggttttcgAATTGTTATTGgcatcattttcacaaaatctgaataaaaaca-GTGT------
i caePb3.Scfld02_62     I 103 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                71311 122 + 21540570 I
e caeSp111.Scaffold514   112147 76 -   141934 I

a score=-178.000000
s ce10.chrX             1232742 2 + 17718866 AC
s caeRem4.Crem_Contig24  322444 1 +  1162296 -c
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112223 2 -   141934 AT
i caeSp111.Scaffold514  I 76 C 0
s caePb3.Scfld02_62      429783 2 -   783054 TT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   56576 39230 -   140921 I
e cb4.chrX                71311 122 + 21540570 I

a score=-274.000000
s ce10.chrX             1232744 3 + 17718866 AAC
s caeRem4.Crem_Contig24  322445 3 +  1162296 att
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112225 3 -   141934 ACT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      429785 3 -   783054 AAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   95806 3 -   140921 aag
i caeJap4.Scaffold17966 I 39230 C 0
e cb4.chrX                71311 122 + 21540570 I

a score=86091.000000
s ce10.chrX             1232747 160 + 17718866 TCAAATATAAGATTCTGTAGATTCTTCTGGTTCTGACGGTTCTTTTTCTGAGTTCATCAGGTACGGTATCTCCTTTCTCATTATTTTCCCTTTTTCTGATCTCGGAATGAAGTCGAGCACTATCACTTTGTTGATCGCCATTGGGATGTGGTGTTCTAGA
s cb4.chrX                71433 158 + 21540570 TCAAATATACGACTCAGTTGTTTCATTCAGCGTCAATGACTCTTCTTGTTCTTTCATAAGATATGGTATCTCACttcttattatttttcctttttcagaacGAGGAATGAAGTCGAACACAATTATTTTGTGGATAGCAAATGGGACTTTATGCTCTG--
i cb4.chrX              I 122 C 0
s caeRem4.Crem_Contig24  322448 158 +  1162296 tcaaatatatGATTCAGTATTCTCTTCCGGTTCTGATGGTTCCTTCTCTGAATTCATCAAGTATGGAATCTCATTCCTCAAAATCTTTCCTTTCTCCGATCTTGGAATAAAATCGAGTATAATCACTTTGTTGATGGCCATAGCAATTTTGTGTTCTG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112228 160 -   141934 TCAAATGTAAGACTCAGATATTTCCtcttgttctgaaaattctttttcaaagttcatgATAAATGGCATTTCgtttctgataatttttcctttctcgGTTCGTGGAATAAAATCCAATACTATCACTTTATTGATGGCAATTGGGATATGATGTTctata
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      429788 160 -   783054 TTAAATATACGATTCAGTTGTTTCTTCCGGTTCCGAGGgttctttttccgaattcatCAGGTACGGTATCTCGTTTCTGATGATGATTCCTTTCTCCGTTCTGGGAATGAAATCGAGTATTATCACTTTATTGATGGCCATTGGGATGTGGTGTTCTGAA
i caePb3.Scfld02_62     C 0 M 20019
s caeJap4.Scaffold17966   95809 148 -   140921 tcaaataCACGATACCATGGCTTCTTCTAGCTCGATCGAATGTCTGTCCGTGTGC---AAGTACGCTAACACATTATGCTCAATGTTACCATTT---------GGAATGATATCAAGAATCATTACTTTTTTAAATGTCAAGTTGATTTCGTTTTCTAAA
i caeJap4.Scaffold17966 C 0 C 0

a score=91.000000
s ce10.chrX             1232907 1 + 17718866 A
s caeJap4.Scaffold17966   95957 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 35
e caePb3.Scfld02_62      429948 20019 -   783054 M
e cb4.chrX                71591 0 + 21540570 C
e caeSp111.Scaffold514   112388 0 -   141934 C
e caeRem4.Crem_Contig24  322606 0 +  1162296 C

a score=-3002.000000
s ce10.chrX             1232908 21 + 17718866 AAATAACAGTTATTTAATTTA
s cb4.chrX                71591 17 + 21540570 ----AACTGTGATTTATTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322606 12 +  1162296 ----CAATG---tttaatt--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112388  3 -   141934 ----aaa--------------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   95958 35 -   140921 I

a score=-8664.000000
s ce10.chrX             1232929 152 + 17718866 TTATGGTGAGTAATAATATTTTTATGTTCCAAGTTTTCATAATTAAAAAAAGGTATTTTGAAGAAGATCTATGTAGATTTTAGCCCGTGAGTAGTAAAAAATTTATGACAACAGCTTTTTTGGAAAAAACTTTCATTTTTTTAA-GCTAGCCC
s caeRem4.Crem_Contig24  322618  25 +  1162296 -------------------------------ggttt-----------------------------------------------------------------------------------------------tttgttttttaaatgaaagc--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112391  28 -   141934 --------------------------ttcaaagtttc----------------------------------------------------------------------------------------aaaa--tttgtttcattat---------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   95958  35 -   140921 I
e cb4.chrX                71608   0 + 21540570 C

a score=-2788.000000
s ce10.chrX             1233081 18 + 17718866 AATTTCCTATTTAACTTT
s cb4.chrX                71608 18 + 21540570 AATCGTCTGGTTGTATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322643  8 +  1162296 -aatgtctt---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112419  4 -   141934 --------------attt
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   95958 35 -   140921 I

a score=52586.000000
s ce10.chrX             1233099 177 + 17718866 CTTACTTTTTAACAACTTTTCCAACGTCTCCCCGCTTGGAGTTTCATTTTCATTTTTCAGCAGCACCCCACACCACACATGTTGATCATTTTGCATCACAACCACGTCATGGACCATTTTATGCTCGCATATTATACTTTCCATCATCTCTGAAGAAACCTGAAA----------ACTTTGAGTTAA
s cb4.chrX                71626 185 + 21540570 CATACTTTTCAGAAGCTTCTCCAAAGATTCAGTCGTTGGAACTTTGTTTTCATCATTTAACAACACACCACACCACACTTGTTGTTCTTTTTGCATGACAACAATATCATAAACGAGTTTATGATCACAAAGAATAGTCTCCATCCTTTCCGAagatatctggaaaaaatttt--tcatttcttaaa
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24  322651 156 +  1162296 ctcacttttcagtAATTTCTCCAATGTGTCAGATGTAGGAACTTCGTTTTCATTCTTTAGCAGGACTCCGCACCACACATGTTGGTCATTTTGCATCACCACTACGTCATGCACCAATTTATGTTCACATAATATGCTTTCCATCATTTCTGATGA-------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112423 187 -   141934 tttacttttcaagagtttttccaatgagtctgaagttggcgtttcattttcatttttcaaaagaacgCCACACCATACATGCTGGTCAGACTGCATTACAGCTACATCGTGTATCAATTTGTGTTGGCTGAGAATGCTCTCCATCATTTCGGATGAAACCTGGAATTAATGTTAATCATTtagttaa
i caeSp111.Scaffold514  C 0 I 32
s caeJap4.Scaffold17966   95993 175 -   140921 CTCACTTTGTAGTATTCTTTCTAGtttttttGCTGTCGGTCtctggtttttatttttcagtaaaaGTCCACACCACAattcttcattattttttgtgaCTATGGCATCCTCTATCATGTCGTTTTGTGAGAGTATAGTTTCTACAAGCACCGATGATACCTGAAA------------ATTAGATTAA
i caeJap4.Scaffold17966 I 35 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M

a score=-655.000000
s ce10.chrX             1233276 4 + 17718866 -GATG
s cb4.chrX                71816 4 + 21540570 -aatg
i cb4.chrX              I 5 I 386
s caeJap4.Scaffold17966   96168 4 -   140921 Tact-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeSp111.Scaffold514   112610 32 -   141934 I
e caeRem4.Crem_Contig24  322807 0 +  1162296 C

a score=-162.000000
s ce10.chrX             1233280 11 + 17718866 ---AGAATGGGTCA
s caeJap4.Scaffold17966   96172 14 -   140921 atttaattgtttta
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e cb4.chrX                71820 386 + 21540570 I
e caeSp111.Scaffold514   112610 32 -   141934 I
e caeRem4.Crem_Contig24  322807  0 +  1162296 C

a score=-835.000000
s ce10.chrX             1233291 6 + 17718866 TGCATT-
s cb4.chrX                72206 6 + 21540570 tACGGT-
i cb4.chrX              I 386 C 0
s caeJap4.Scaffold17966   96186 3 -   140921 ----ttt
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeSp111.Scaffold514   112610 32 -   141934 I
e caeRem4.Crem_Contig24  322807 0 +  1162296 C

a score=33912.000000
s ce10.chrX             1233297 89 + 17718866 TGCCTTACCAGCTTGTTTTGTGCAGTTATAAGATCAGAAATTGCACCTTCAATATGTACCCTGTCATTCTCATCAATCATACCGTAATC
s cb4.chrX                72212 89 + 21540570 TAGCTTACTTCTTTCCCTTGTGCTGTTATCAAATCTTCAAGCGCTCCTTCAATATGTAACTGGTTGTTTTTGTCAATCATCCCAAAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322807 84 +  1162296 -----CACCAGTTTGCTTTGGGCAGTTATTAAATCTGTGAGGGCCCCTTCAATGTGCAACCGACCGTTCTCATCAATCATGCCATAGTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112642 89 -   141934 tagtTTACCTGTTTTCCTTGCGCAGTTATCAAGTCTGCTACCGCACCTTCCACGTGaagttgatttttctcatcgATCATTCCATAGTC
i caeSp111.Scaffold514  I 32 C 0
s caeJap4.Scaffold17966   96189 89 -   140921 tgtcAAACCATTTTATCTTGAGCAGTTATTAATTTCGATATAGGTCCTTGAAAGTGAAGCACTTTATTTTCATCAATCATCCCGTAATC
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M

a score=2472.000000
s ce10.chrX             1233386 7 + 17718866 ACCTGGA
s cb4.chrX                72301 7 + 21540570 TCCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322891 7 +  1162296 TCCTGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   96278 7 -   140921 TCCTGAA
i caeJap4.Scaffold17966 C 0 I 31
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeSp111.Scaffold514   112731 0 -   141934 C

a score=278.000000
s ce10.chrX             1233393 3 + 17718866 ATA
s cb4.chrX                72308 3 + 21540570 AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322898 3 +  1162296 ACA
i caeRem4.Crem_Contig24 C 0 I 22
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   96285 31 -   140921 I
e caeSp111.Scaffold514   112731 0 -   141934 C

a score=91.000000
s ce10.chrX             1233396 1 + 17718866 T
s cb4.chrX                72311 1 + 21540570 T
i cb4.chrX              C 0 I 42
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   96285 31 -   140921 I
e caeSp111.Scaffold514   112731 0 -   141934 C
e caeRem4.Crem_Contig24  322901 22 +  1162296 I

a score=0.000000
s ce10.chrX             1233397 2429 + 17718866  
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   96285   31 -   140921 I
e cb4.chrX                72312   42 + 21540570 I
e caeSp111.Scaffold514   112731    0 -   141934 C
e caeRem4.Crem_Contig24  322901   22 +  1162296 I

a score=364.000000
s ce10.chrX             1235826 4 + 17718866 TTTT
s caeRem4.Crem_Contig24  322923 4 +  1162296 tttt
i caeRem4.Crem_Contig24 I 22 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeJap4.Scaffold17966   96285 31 -   140921 I
e cb4.chrX                72312 42 + 21540570 I
e caeSp111.Scaffold514   112731 0 -   141934 C

a score=302.000000
s ce10.chrX             1235830 2 + 17718866 TT
s caeRem4.Crem_Contig24  322927 2 +  1162296 ct
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   96316 2 -   140921 TT
i caeJap4.Scaffold17966 I 31 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e cb4.chrX                72312 42 + 21540570 I
e caeSp111.Scaffold514   112731 0 -   141934 C

a score=1573.000000
s ce10.chrX             1235832 5 + 17718866 AACTT
s cb4.chrX                72354 5 + 21540570 AGCTT
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig24  322929 5 +  1162296 gaCCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   96318 5 -   140921 AGCTT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M
e caeSp111.Scaffold514   112731 0 -   141934 C

a score=95087.000000
s ce10.chrX             1235837 342 + 17718866 ACCAGTTTTGAACCACGACTTTCCGAACTTCCTACTTGTGTTCAGCTCCTTATTTCCAATGTACTCTTTGAGCAACTGCCGCCCACTCAAAATAACTTGCCCCCACTTCCCCTTTGCCATTTCCTTGTCAGTTTCCATATGGGCTATC--TGAAAAAAAAAATTACGATTTTTTCTAATA-----TTTG--AAAATTTCGCTGACTACTTTGATTTTGACATCATCAATTGAGTGCCCACAGTTGACGAGCTGCTTATCCAATGTTTCATCAAAATCTCCAAAACTGGCAACACCAAACTCTGCGGCAGAGTATG-----------------------------------------------------------CTTGGATAAGGGTGACGTCTAAGATTTTCTTGACTT
s cb4.chrX                72359 393 + 21540570 ACCTGTTTTAAACCACGctttcccaaattttctgtTCTTATTCAAATCGTCGTTACCCACATATTCCTTGAACAGCTGCTGGCCACTCAAAATCACTTGACCCCATTTTCCTTGCTCCATTTCTTTGTCTGTTTCCATATGTGCTACCTATAAGAGTGAAAAT---GTTAAAGTTTGAGAGCTTCATCA--AAGAAATTGCTGACTACTTTAATTTGCATGTCACTAATCGAGTGCCCACAGttgagaagatttttttcattttcttcgttgaatattccaaaactGGCAACACCGAATTCCGTTCCGGAGTAAGCTGCAAACAGACACGTGCTctcattttttaatgaaatt-------ccTGATC-----ACCTTGTAATAAAATTacgttcaaaatttctttgattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  322934 390 +  1162296 ACCTGTCTTGAACCAAGactttccaaatttcctaCTCTTGTTCAGCTCATCATTTTGCAAGTACTCTTTAAACAACTGTCGTCCACTCAAAATAACCTGTCCCCACTTTCCTTTTGCCAACTCTTTGTCGGTTTCCATATGTGCCacc--taaaattcaaaat---gtttcggTCAGTCA-CTGCTTCA--AAGTGGTCGCTGACTACTTTAATTTTCATGTCATCAATTGGGATACCGCAATTGAgaaggtttttttcagattcttcatcGAACACACCGAAACTGGCAACACCGAATTCCGCTCCGGAGTAGGCTGAAAAACAGAACTGACTTGCA---------GAAATTGAGCTAACCTGAGCTA---ACCTTGCAATAATGTAACATCCAAAATCTTCTTGACTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   112731 379 -   141934 GCCAGTTTTGAACCAAACCTTCccgaattttct-tttttgttcagcTCATCATTTAATATATACTCGATAAACAACTGCCGTCCACTCAAAATTATTTGTCCCCACTGCCCTGGCTTCATTTCTTTGTCGGTATCTATATCAGCGACC--TGGAAAACCAGAT----------TCAGTTAGTTGTTTTAGTAAATAATAGCTGACTactttgattttcatatCATCAATGGAAAAACCGCAATTGACAAGTTGCTTGTCATTGGCTTCATCAAACACACCAAAACTGGCTACACCGAATTCCGCACCAGAATATGctaaaaa---------actttca---------aaaaatgtgttctATTGAAATATTCACCTTGTATTAAAGTaacattaaaaattttcttaattt
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   96323 323 -   140921 ACCTGTTTTGTACCAATGCTTGCCAAACCTAT--CTTCATTTCGGCTTAAC----CCTAGATAATTACTGAAAAGTTGTCGGCCTTTCAGGATGATTTGACCCCATTCTCCACTTTCCGCTTCTTTCTCTGTTTTAATGTTGGCTATC--TAGAAAGTGTACG---GTTT---TTTATTA-----TACG--AGGGTGTGCAATATTACTTTAATTGCCATTCCATGAATCGATTGACCACAATCAACGAGATGCTCTTTAGAACTTGGCtggaaaattccaaaactAGCTACTCCAAATTCAGCAGAAGAGTAAACTGTGAG------------------------------------------------------------AATGAAATGTATTAATTCATCT------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      429948 20019 -   783054 M

a score=37059.000000
s ce10.chrX             1236179 189 + 17718866 ------------------------TTTTGGCAGTGGCCACTGATACCAC---AGCCCCATGG----------------TTGGCTACAATCTGGAATAGGAGTTGAATGAGATGTTGGGTTATG-GAAATAAAAATGAAAATGG----GGCTTACTTCGAG-------TGATGATAA---------GTTGTAGATTTTGTGAACTTCATATTTGATAA-----AACATTTCAGCAGTTGGGA---GTTTGAGAAGAGTAGGG
s cb4.chrX                72752 173 + 21540570 ------------------------tctttcCCGTTGAAACAGAAACTAC---AGCTCCATGA----------------TTTGCaataatctgaaa-----------actaaC------TAAAGcagtttgaatattttgattg----aACTTACTTCTAA-------AGAAGATAA---------ATCGTAGATTTTGTGAACTTCGTACTTGATGA-----AACACTTCAATAACTGaga---gtttgaaaacaacagaG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323324 174 +  1162296 ------------------------TTTTAGCGGTGGAGACGGAAACTAC---TGCTCCATGG----------------TTGGCAATGATCTGAAG-----------TGTAAC------TTCTG-AGATTGAAACTTAAAATTG--GAAGCTCACTTCTAA-------TGATGATAA---------GTCATAGATTTTATGAACTTCATATTTgatga-----aacatttcaataattgaga---gtttgaaaaaagtaggg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113110 175 -   141934 ------------------------ttttcgcagTGGAAACGGATACAAC---AGCTCCATGG----------------TTAGCAATAATCTGaattaa--------taaaat------taatC-AGTTTCAA--TTTACAAGG--CACTCTTACTTTTAA-------AGATGATAA---------GTTATAGATTTTATGAACTTCATATTTAATGA-----AACATTTGAGAAGTTGCGA---ATTGGAGAACAGTAGAG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      450109 168 -   783054 ------------------------ttctggcACT-GACACGGATAC-AC---AGCAC--GTG----------------ATAGCAATAATCTGAATTGA------ACTGAGAA------taacc-aaattga------aaaaag--gaaacttaCTTCTAA-------AGATAATAA---------ATTGTAGATTTTGTGAACTTCGTATTTGAT-A-----AACATTTGAGTAGTTGTGA---ATTAGAGAAAAGTATTG
i caePb3.Scfld02_62     M 20019 C 0
s caeJap4.Scaffold17966   96646 230 -   140921 TTTCGCCAAGTCCCAAGTCCAAAATTCTTGGGGTACAAGCTTGAGCCACTTGTACCCCAGGAATTTTTATGCCTAGCTTTTGCATTTACCTTGAA-----------TGAGAA------Tggct----ttgaa-----aaattgttcaaaatgttttccaaGAGACACAGAAAATACTGAACCAGTGTTAGCGATTAtcttaatttaaaaaattagaaaaaacaacatttttttgttttaaactcaCTTGAATAGAA-----
i caeJap4.Scaffold17966 C 0 C 0

a score=-21304.000000
s ce10.chrX             1236368 113 + 17718866 ----------TAAC-CTAAAAACTTTCATTTTA-------ATTTCAAAAATTTCAAGTTTTTTTGGCAATACAAGCCTGTGAGCACAAATTGATTGTCTGGGTGAAAA---AAAT------------GTTAAGTGCACACATGCAA-
s caeRem4.Crem_Contig24  323498  33 +  1162296 ----------aaac-ctgaaaaa-----------------------tacattttttgtt----------------------------------------------agaGTCAA----------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113285  27 -   141934 ----------AAAc-cttaaaac-----------------------aaaa----aagtt----------------------------------------------ggg---AA--------------------------------A-
i caeSp111.Scaffold514  C 0 I 3
s caePb3.Scfld02_62      450277  45 -   783054 ----------AGAC-CTGAAAAT-----------------------ATAGTTTCAAGTT----------------------------------------------AAA---AAAT------------------TGCGCTTTTTCTA-
i caePb3.Scfld02_62     C 0 I 3
s caeJap4.Scaffold17966   96876 103 -   140921 TTCAAATTGTAAACGCTGTAAATTTTCATATTAATAAGCCATTTCAGCAAATTCGTGTC-----------------------------------------AGTAAAGA---AAATTGGAAtctaaattttaaataaatacaataaaa
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                72925   0 + 21540570 C

a score=150247.000000
s ce10.chrX             1236481 289 + 17718866 -AAACATTTAAAACCA--------------ACCTTATATTGCTCGATAATCCCAGCGATTCGATCTAATAAAGACGCTCTCCAGACATCCATCGTCGACTCCGCAAGTATACAACTTTCGCCTTTTGTAAGGATTGTGTAGAGGTAGGATAAAGCGTCATGACAGTGAAGCCCGTCAGTGATTAGGTGATTTTTGGATCCAAGCTGTTCAGTTTTTTTTAGCATACCAAATAGCTGCTCGAAGTAGTCGTGGCACAGGTGGAATCCACTTTCCTGTGAATGTGAGATGTATTGATC--GTTTTCCA
s cb4.chrX                72925 276 + 21540570 --------------AA--------------ACATTGTACTGCTCgataattccagaaattctatcAAGCAATGATGCTCTCCAGACATCAAGAGTAGTCTCGGCAATAATACAAGTCTCTCCTTTAGTGAGAATGGTAAAAAGATACGCTAGGGAGTCGTGGCAGTGTAGACCATCCGTAATCAAGTGATTTTTACTTCCGaccgtttcattttttttcagcatacTGAACAGTTTTTCGAAGTATTCGTGGCATTGACTAAATCCACTATTCTGTGTGTGATAAACATATTGATT--AGTTTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323531 286 +  1162296 -TGACATTT---ACTC--------------ACTTTGTACTGCTCAATAATTCCAGCAATTCTGTCCAACAGCGACGCTCTCCAAACATCCAACGTTGATTCAGCAAGTACACAAGTCTCTCCTTTTGTGAGAATAGTGAAAAGATAAGATAAAGCATCATGACAGTGAAGACCATCTGTTATCAAATGATTTTTGGACTCTAGTGGTTCAGATTTGGTGAACATGTTGAACAACTTCTCGAAATAGTCATGACAGAGATGAAAACCACTTTCTTGGGAATGAGAGATGTACTGGTC--GGTTTCCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113315 289 -   141934 -GAACATTTGCAACTA--------------ACCTTATACTGCTCAATGATTCCAGCAATTCTATCCAACAAGGATGCTCTCCACACATCCAACGTTGATTCCGCAAGAACGCACGTTTCGCCTCTCGTTAAAATGATAAACAGGTACGACAATGCGTCTTGACAGTGCAGACCATCGGTtatcaaatgattttgagACCCGATGGATTCAGCATTAGATAGCATCTTGAACAATTTGTTGAAATAGTCATGACACAGTTGAAATCCGCTCTGATGGGAGTGGGAGATGTATTGGTC--AGTTTCCA
i caeSp111.Scaffold514  I 3 C 0
s caePb3.Scfld02_62      450325 303 -   783054 -GAACTTTAGTCATTACTCTCCAAAACCTTACTTTGTACTGTTCAATGATTCCAGCAATCCTATCCAACAAGGAGGCTCTCCAGACATCTAATGTTGACTCAGCTAGTACACATGTCTCTCCTCGTGTGAGAATTGTGAAAAGATAGGATAACGCATCATGACAGTGCAATCCATCGGTTATCAAATGACTTTTGGACCCGACGTTTTCATCTACTTTGAGCATGttgaataacttttcaaaataattgtgaCACAAATAATAACCGCTCTCTTGAGAGTGAGAAATGTATTTATC--CGTTTCCA
i caePb3.Scfld02_62     I 3 I 41
s caeJap4.Scaffold17966   96979 293 -   140921 tgAACTCTAGGAGCTCCTC-----------ACTTGGTATCGTTCGACTAATCCtacaattttatcgacaagaGAAGCATTATAATTTGTTTCCGTAAATTGTGTAAGAACACAAGTGTCCCCtcggaccaaaataaaaaataaatatggcAACACTTCGTGATTATGAAAACCGTTGTAAATCAAGTGGTTTATCCATTCGTGTCGCAAATTATTGGGTAGCATGTCCAATAGTTGAttataaaaatcaaaacataAATGGAAACTGCTTTTGTTGGAATGAGCAACGTATCGATTCAAATCTC--
i caeJap4.Scaffold17966 C 0 C 0

a score=2573.000000
s ce10.chrX             1236770 4 + 17718866 GACT
s cb4.chrX                73201 4 + 21540570 AGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323817 4 +  1162296 AGCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113604 4 -   141934 AGCT
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966   97272 4 -   140921 GGct
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I

a score=-2388.000000
s ce10.chrX             1236774 27 + 17718866 GAAAAATGTGAGTTTTATTTTAATATT
s cb4.chrX                73205  8 + 21540570 ACAAATTT-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323821  8 +  1162296 GAAAAGTC-------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   97276 20 -   140921 -gaaagta------tttttttaaaatt
i caeJap4.Scaffold17966 C 0 I 108
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeSp111.Scaffold514   113608  0 -   141934 C

a score=-6033.000000
s ce10.chrX             1236801 97 + 17718866 CACTTCTGTACTGCAGTAAAACCGCAGTTACAATTCAACAGGAAACAACACCACCCTAGCTGTACATAGTTTGCCATCATACGCGGCGTGGAAATTA
s cb4.chrX                73213  7 + 21540570 -----------------------------CCAATTA-------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323829 32 +  1162296 ---ATCTATAAAGTGGAAA----------ACAATTAGC----------------------------------------------------GAAACTA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I
e caeSp111.Scaffold514   113608  0 -   141934 C

a score=-751.000000
s ce10.chrX             1236898 38 + 17718866 ATGAGATCTTTGTGTTTTATTTTTGTCAATGAATTTTC
s cb4.chrX                73220 11 + 21540570 ---------------------------AGTGACTGATA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I
e caeSp111.Scaffold514   113608  0 -   141934 C
e caeRem4.Crem_Contig24  323861  0 +  1162296 C

a score=-2190.000000
s ce10.chrX             1236936 42 + 17718866 -AGAAATTCAACTTAAGTCAGGAGCAATCTGAAAATCAGGCAA
s cb4.chrX                73231 18 + 21540570 AAAAAGTTGAAGTAAACC-------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   113608 34 -   141934 -ACAAATTCAGCTAAGAcc-----taat-tgaaaat--ggaaa
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I
e caeRem4.Crem_Contig24  323861  0 +  1162296 C

a score=-2409.000000
s ce10.chrX             1236978 120 + 17718866 CTCCCGACAGCATGCCTCAACTTTTGTCGGCTGCCTGATTAAGACACCTAACATGCTAACTTGAGAGCCCCATCCAGTATTTGAGCGGCCCCGCCAAAGTCGGCTGCTCATTTTTATAGT
s cb4.chrX                73249  31 + 21540570 TTCCCGGGAGAAT-------------------------------CATCGAA-------------------CAGTCAATATT---------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      450628  41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I
e caeSp111.Scaffold514   113642   0 -   141934 C
e caeRem4.Crem_Contig24  323861   0 +  1162296 C

a score=-775.000000
s ce10.chrX             1237098 4 + 17718866 AGTT-
s cb4.chrX                73280 3 + 21540570 --GTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   113642 4 -   141934 aagt-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I
e caeRem4.Crem_Contig24  323861 0 +  1162296 C

a score=-1528.000000
s ce10.chrX             1237102 50 + 17718866 ACCTTCCGGGTATAATAAATGCCACACTGTCATTCGATTCTTCAATAAAC
s cb4.chrX                73283 22 + 21540570 GTCTT--------GATATTCGAAATCTGAT--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323861 47 +  1162296 ACCTTCCAGGAACAATAAACGAAATATCATTACTAGTTTCCTGAATA---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113646 50 -   141934 acCTTCCAGGGAGAATAAAACAGGTTGAGTTATTGGAATCGTCATCCATT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      450628 41 -   783054 I
e caeJap4.Scaffold17966   97296 108 -   140921 I

a score=1541.000000
s ce10.chrX             1237152 20 + 17718866 TGGTCGCAGACATAGTTTGG
s caeRem4.Crem_Contig24  323908 14 +  1162296 ------CAGTCATAATTGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113696 11 -   141934 ---------TTATGGATCGG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      450669 20 -   783054 TGATTGCCATCGTAATTTGG
i caePb3.Scfld02_62     I 41 C 0
e caeJap4.Scaffold17966   97296 108 -   140921 I
e cb4.chrX                73305  0 + 21540570 C

a score=66041.000000
s ce10.chrX             1237172 96 + 17718866 TGGGAATCCTAAAAACCCAAAAGCATCAATCACCCAAACGTGCCGAGCAAGACTAATCGCAGCAATATCCTCGGCCAAAACGAACACTCTCTGAAA
s cb4.chrX                73305 94 + 21540570 -GAAAAgcttaaaaatccaaaaccgTCAATAATCCAAACGTGTCGAGCAAGGCTGAGAGTAGCAATGTCTTCTGCCAGAACAAAAACTCTCT-GAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  323922 96 +  1162296 AGAGAAACTCAGAAATCCAAAAGCGTCAATTATCCAGACATGTCGTGCCAAGCTTATAGCAGCTATGTCTTCGGCTAACACGAAAACTCTCTGGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113707 96 -   141934 GGAGAAACTCAAGTAGCCAAACCCATCAATTATCCACACATGGCGTGCAAGACTGATAGCGGCAATGTCTTCAGCGAGAACAAATACCCTctcaaa
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      450689 96 -   783054 AGAGAAACTCAGAAAACCAAATCCGTCAATGACCCAAACATGACGTGCAAGACTGATTGCTGCAATATCTTCAGCAAGAACGAAGACTCTCTGAAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   97404 96 -   140921 TGAAAAACTCAAGTAGCCAAAACCATCTATCACCCACAAATTACTCGCGACAATAATTTCAGAAATGTCATACGTCAGAACAAAGACACACTGAAA
i caeJap4.Scaffold17966 I 108 C 0

a score=-8393.000000
s ce10.chrX             1237268 36 + 17718866 --AATCGTGTT------------GTTGGC-AGTTTTTTAGTAAGTATGACT
s cb4.chrX                73399 23 + 21540570 ---------------------------AC-AAATATTtaaagaatgttttt
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24  324018 23 +  1162296 ---------------------------AC-ACGTCTTTATTGAACAATTCT
i caeRem4.Crem_Contig24 C 0 I 8
s caePb3.Scfld02_62      450785 24 -   783054 ---------------------------ACGATAGCTTTGAAGGTTAAATGA
i caePb3.Scfld02_62     C 0 I 5
s caeJap4.Scaffold17966   97500 50 -   140921 ACCAtcgttttaaaataaaataaaataaa-atatttccAATAGTCACGGCC
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   113803 28 -   141934 I

a score=61113.000000
s ce10.chrX             1237304 106 + 17718866 AGCTGACCTCAATACTTTGAAGTGTACTTTGTGAAATTCTGAGCATGTGGCCGTAGTGCTCAAAATCCACGATAGCTGTTGTGCAGCCGATGTCGCTGAGTTTTTC
s cb4.chrX                73431 106 + 21540570 TACTAACCTGTATGCTCTTAAGTACACTTTCCGAGGTTCTGAGAACGTGTCCGTAATGTTCAAAGTCTACAATCGCCGTGGTGCAACCAATGTCAGCAAGTTTTTC
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24  324049 106 +  1162296 TGTATACCTGAATGCTATTAAGGGTGTTTTGTGAAATACGGAGCACATGTCCGTAGTGTTCGAAGTCCACAATTGCAGTAGTGCATCCGATGTCAGCAAGTTTTTC
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold514   113831 106 -   141934 acctTACCTGAATGCTACGGAGAGTGTTTTGTGATATTCGGAGTACATGTCCGTAATGCTCGAAGTCCACAATAACAGTCGAACAACCAATATCCTTTAGCTTTCC
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      450814 106 -   783054 ATCTTACATGAATGCTGTGAAGAGCGTTTTGTGATATCCGGAGAACATGTCCATAATGCTCAAAATCCACTATTGCGGTAGAGCATCCGATATCAACAAGTTTCTC
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold17966   97550 105 -   140921 -GTTAACCTGAATTCTCTGTAGCGATTCTTTAGAACATttgataattttattataGCGTTGAAAATCCACAACGGCTGATGTGAAATTGATGTCTTCGAGTGATTC
i caeJap4.Scaffold17966 C 0 I 238

a score=6952.000000
s ce10.chrX             1237410 11 + 17718866 GGAAGCTGAAA
s cb4.chrX                73537 11 + 21540570 TGCCGCTAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324155 11 +  1162296 GGAAGCTGGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113937 11 -   141934 ggaagctgaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      450920 11 -   783054 GGAAGCTGAAA
i caePb3.Scfld02_62     C 0 I 60
e caeJap4.Scaffold17966   97655 238 -   140921 I

a score=-124.000000
s ce10.chrX             1237421 2 + 17718866 ----AA
s cb4.chrX                73548 2 + 21540570 ----AA
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig24  324166 2 +  1162296 ----TA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   113948 6 -   141934 atttta
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      450931 60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I

a score=-1780.000000
s ce10.chrX             1237423 1 + 17718866 --A
s caeRem4.Crem_Contig24  324168 1 +  1162296 -A-
i caeRem4.Crem_Contig24 C 0 I 84
s caeSp111.Scaffold514   113954 1 -   141934 t--
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      450931 60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I
e cb4.chrX                73550 43 + 21540570 I

a score=758.000000
s ce10.chrX             1237424 65 + 17718866 GAACATTTTCCGTAAAAGTGTGCATGAAAATTTTTAAATTTGTGTCGTAAAGGGGTACTTTACTT
s caeSp111.Scaffold514   113955 53 -   141934 ga--attttttttagaagt-tg---gaaaatattta---ttgtcTC---AAgggaaatttgattt
i caeSp111.Scaffold514  C 0 I 42
e caePb3.Scfld02_62      450931 60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I
e cb4.chrX                73550 43 + 21540570 I
e caeRem4.Crem_Contig24  324169 84 +  1162296 I

a score=0.000000
s ce10.chrX             1237489 525 + 17718866  
e caePb3.Scfld02_62      450931  60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I
e cb4.chrX                73550  43 + 21540570 I
e caeSp111.Scaffold514   114008  42 -   141934 I
e caeRem4.Crem_Contig24  324169  84 +  1162296 I

a score=191.000000
s ce10.chrX             1238014 2 + 17718866 GA
s cb4.chrX                73593 2 + 21540570 ga
i cb4.chrX              I 43 C 0
e caePb3.Scfld02_62      450931 60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I
e caeSp111.Scaffold514   114008 42 -   141934 I
e caeRem4.Crem_Contig24  324169 84 +  1162296 I

a score=-426.000000
s ce10.chrX             1238016 6 + 17718866 CAAAAC-
s cb4.chrX                73595 6 + 21540570 -aaaaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   114050 6 -   141934 CAAATG-
i caeSp111.Scaffold514  I 42 C 0
e caePb3.Scfld02_62      450931 60 -   783054 I
e caeJap4.Scaffold17966   97655 238 -   140921 I
e caeRem4.Crem_Contig24  324169 84 +  1162296 I

a score=1910.000000
s ce10.chrX             1238022 2 + 17718866 CT
s cb4.chrX                73601 2 + 21540570 ct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324253 2 +  1162296 CT
i caeRem4.Crem_Contig24 I 84 C 0
s caeSp111.Scaffold514   114056 2 -   141934 CT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      450991 2 -   783054 ct
i caePb3.Scfld02_62     I 60 C 0
e caeJap4.Scaffold17966   97655 238 -   140921 I

a score=165827.000000
s ce10.chrX             1238024 212 + 17718866 TACCAATATGGCTTGGATTGATTAGTACTGGAATCGCACCAAGCAGGAAGCCACCGAGTTGGTACAACACGTACTCCACAGTGTTCTCCATGCACATTAAGATTCGATCTCCGTTTTTAACACCGTGATGTGACATGTAGTTTGCAGTTCGTTTGGACCCATCGACAAGTTCCTCATAGGTTACACATCGTACTTCTGAGATTTCTTCGATC
s cb4.chrX                73603 212 + 21540570 caccaagaTGGCATGGGTTGATCAATACTGGTATGGCTCCCAACAAAAATGTAGCgatctgatagaacacataTTCTACATTGTTTTCCATACACATCAGAACACGATCCCCAGATTTCACCCCATGATGTGACATGAAATTAGCAATTCTTTTTGAGCAATCAACCAGTTCTTCATATGTGACACATCTAACTTCTGATATTTCTTCTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324255 212 +  1162296 CACCAATATGACTCGGATTAATCAAAACTGGAATAGCTCCCAGCAAAAATGCGCCAAGCTGATAGAACACATACTCCACTGTATTCTCCATACACATCAAAACACGATCCCCGTTTTTCACACCATGATGTGACATATAGTTAGCCGTTCTTCTAGACCCATCCACCAGCTCTTCGTAGGTTACACATCTGACTTCCGAGATTTCTTCAATC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   114058 212 -   141934 TACCAATATGACTCGGATTTATCAAAACTGGGATAGCTCCGAGCAAAAAAGCTCCCAGTTGATAGAACACGTATTCTACGGTGTTTTCCATGCACATCATTATTTTATCTCCCATGTTCACACCGTGATGCGACATATAGTTTGCAGTTCGTTTTGATCCATCAACAAGTTCTTCGTAGGTTACACAACGAACTTCTGAGACCTCTTctatc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      450993 212 -   783054 cacCAATGTGACTCGGATTAATCAACACTGGAATTGCACCTAATAAAAGAGCTCCAATCTGATAGAACACGTATTCAACTGTGTTTTCCATGCACATCAGAATCTTATCACCATTTTTCACACCATGATGATACATATAGTTTGCTGTTCTCCTGGAGCCATCAACCAGTTCTTCATAGGTGACACATCGTACTTCGGCAATTTCTTCTATC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   97893 212 -   140921 TACCGAGATGATTAGGATTGATAATAATTGGAACCGCTCCGAGAAAACAAGCTCCAAGATGATAGAATACATATTCAACACTGTTCTCCATGCACATTAAGATACGATCACCACTTTTAACTCCATGATATGACATataatttgctgttttttgaaATCCTGTTACAAGCTCTTCGTAAGTCACACAACGAGGCTCGTCGACTTCCTCCACC
i caeJap4.Scaffold17966 I 238 I 1107

a score=16679.000000
s ce10.chrX             1238236 269 + 17718866 TGAAATTT---------GCTTCGATTTTCTT----TAAACTTTTTCTTTGCCCACCAATGCAATTTTCGCTGGATTATAGTTTCTGTGATAGCTCAAATTGTCAAGAAGCCATTCTCGGAAGTTCGCATTT--TCTGGA----GCCTTTTCAGGA---GGATTTTCTGGGGTTTCTGTGTTTTCCTGGGTCGGTGTC-------GGGCTCGGCTTTAAAACTATCGTACAATCTGTCGTTTTATCGTTATCTTCGGTGGTTTTGTT---------TAGCTTTTTTAAATCCTGAAAATTCTTAATAT
s cb4.chrX                73815 257 + 21540570 TAAAAATGTAGCAGTAAATTTATATATTCAC----TCTTACTTGTTAATCCTAACCAGTGCAATTTTTGCAGGATTGTGAATCCGGTGATAGCTGAGGTTGCTAAGAAGCCATTCACGCAAATTTGGATTAACAGAAGAGTCAGTGGTTCCAGAACCCGGGATTTCCGATGAC-ATATCATTTT---GATCGCAGTC---ATCTGGCTCCAATGT------AACAGTGCATTCTGTCGTTTGTtcgttttcaca---atttt---------------------tcaagtCCTGGAATa---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324467 260 +  1162296 TGAAAGTTGAG-AGTATGGTTGTATTATGGTAGTATGGAATTGGGTGAGGTTTACCAAAGCTATTTTTGCTGGATTATGGTTTCTGTGGTAGCTGAGATTGTCCAGGAGCCATTCTCGGAGGTTCGGGTTA--TGAAGA------TGTTCC----------TTTTCGGTTGGT----TCTTCTT---GGTCTGGAACTGAAACCGGCTCCTGTTTTAGAACTACAGTGCATTCGGTTGTTTCatcgcttttttc---tttttcgct---------aAGCTCGCTCAaatcctgaaaac---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   114270 266 -   141934 taaaaattttc------atttggagAATTTC----GAATAATAAAATACATTTACCAGAGCAATTTTTGCGGGGTTATTCTTTCTATGATAGCTCAGATTGTTCAAAAGCCATTTTCGCAGGTTTGGTGTT--TCA----TTAGTCGACTCGGTG---AGTGTTTCAGATTCGGAAGTT---------GACGAAgaa----------ttagttttcaaaacgacGGTATACTCGGTGGATTCAATAGTTTTGTc---gtcctcctccttttcattcaaatcgcTCAGATCCTGAAGAAGAACACAGT
i caeSp111.Scaffold514  C 0 I 2
s caePb3.Scfld02_62      451205 269 -   783054 TGAAAAGTGAC------TTTTATATTCCTTT----ATACGACGGACACTGCAAACCAAAGCAATTTTAGCCGGATTATGGTTTCGATGATAGCTGAGGTTGTCTAGAAGCCATTTCCGTAAGTTCGCATTT--TCAACC-TTAGTTTTTCCAG------GTGGTTCAGGTGTTGCTGCTTTTTC---CGGTGTGATT----------TCTGGTTTGAGAACCACAGTGCATTCTATagattcgttgtttttttc---tgtctcgtC---TGCAGTAATTTTGTTCAGgtcctgaaaaaaccaaaaat
i caePb3.Scfld02_62     C 0 I 104
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-29447.000000
s ce10.chrX             1238505 194 + 17718866 TCTTTATTGAAAAATGTATTTGGTAGTTAATTTT--TAATTATAT---------------GTCTCGTCACAGTGATAACTGCAagacttggttgtaggttaaagcttataggtttaggctaaggcttaggcttag----gcgtagttttaagattagtcttaggcttaggcgtaaggttagccgtagtattacgatttggcacaggctcaggctt
s cb4.chrX                74072  49 + 21540570 -----------------------aaattcaat----caaattttt---------------------ccat------------------------------------------------ACCAGATTACTGA--------GCGCAATTTCGAGA--------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324727  29 +  1162296 -----------------------aaa---aatg---caaatttat---------------------tc---------------------------------------------------taaaatttttg-------------------------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   114538 166 -   141934 ----------AGAGTATAACTAGAAGCTGAATTAGCTAAACCTATAATTTTAACGCCTCAGCCCAGCCATTCTAAAGACTG-GTGCCCTGGAAGTCACGGAACACTTATGAT----GGGGAAAACTTATGATTCAAATGGGGCACTTATGATACAGA---------TGGGGACAGGGATACTTCTGGCGT-------------------------
i caeSp111.Scaffold514  I 2 C 0
e caePb3.Scfld02_62      451474 104 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=47920.000000
s ce10.chrX             1238699 218 + 17718866 aagcttagAAAAACTACAAAAAAATTAATATACAGTATTCAAAAT-AGTACATACACTTTTAACACAAAAATTGAAACCTTACAGGATACAACTTAGGCTTGATCGTGCCCTCGTCTTCGTCCTTAGCGCTGGAACTATCATCGACTGTGACCGTAATCTCGTATTGATCAATATTGAAGTCGGTCATTTGTTGAGGAGTC-----TGAAACTTGAAAGTATCT--
s cb4.chrX                74121 157 + 21540570 --------------------GAAAACAACGC----GGTTTAAAAC-----------------------------ACTACTCACAGGATATA---TGGGCTTGATCGTGCCCTTTTCATTATC---------GCAATCCTCATCGAGTGTGACCGTTATTTCGTATTGATCAATATTGAAGTCGGCCA--TATTCGGTAATCGGCTCACAGAACTG--AAAACTACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324756 159 +  1162296 -----------------------------------gtttaaaaac-----------------------------tCGACATACAGGATATAACTTAGGCTTGATCGTGCCCTCGTCGTCGTCCTTTGAATTGTTACTATCATCGAGAGTGACCGTTATTTCGTATTGATCAATATTGAAGTCGGTCA--TATTTGGGAATCGAag-aaagaactgcaaaaacagaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   114704 177 -   141934 --------------TGTATTACAAACACTAT----TG---------AATTGACTCTTTTCT-------------AATGCATACAGGATATAACTTAGGCTTGATCGTGCCTTTGTCGTCATCTTT---ATTCGTATTATCATCGAGAGTGACCGTAATTTCGTATTGATCAATATTGAAGTCGGTCA--TAatagaaaatcga-a-gaagaactgcaagaagga--
i caeSp111.Scaffold514  C 0 I 4
s caePb3.Scfld02_62      451578 201 -   783054 -------------AGGCATAGTAAATAATat----tgttcaaaacaaagtGAAAAGCTTATTAGCAAAGAA---AACTCATACAGGGTATAACTTAGGCTTGATCGTGCCCTCGTGTTCCTCTTTGGCGTTCGTACTATCATCAAGAGTGACCGTGATTTCGTATTGATCAATATTGAAGTCGGTCA--TATTAGGAAGTAAATT-GAAGAACTgtaaaaacga--
i caePb3.Scfld02_62     I 104 I 29
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-4105.000000
s ce10.chrX             1238917 30 + 17718866 GATTTGGTCGGTCTATCGGGGGCAAG----GTTC-
s cb4.chrX                74278 27 + 21540570 ----GTA----TTTCTAAGAGCAGAGCATGGCTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  324915 30 +  1162296 ----gaaaaagtatcTAGGAGCAAAGCAT-GCCCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   114885 23 -   141934 -------aaagtatataGG---GAAGCAT-GTCC-
i caeSp111.Scaffold514  I 4 I 7
e caePb3.Scfld02_62      451779 29 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=25377.000000
s ce10.chrX             1238947 46 + 17718866 ATGAGCAAATTTTTTGCGAGCTGG-CTCTTGAGAGATGAGAACAGTG
s cb4.chrX                74305 44 + 21540570 ATGAGACAAATTGTCG---ACTGGCCTCTTGAGATATGAGAACAGCG
i cb4.chrX              C 0 I 2821
s caeRem4.Crem_Contig24  324945 43 +  1162296 ATGAGCAAATTTGTCG---ACGGG-CTCTTGAGAGATGAGAACAGTC
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514   114915 43 -   141934 ATGAGCAAATTTGTCT---AGAGG-CTCTTAAGAGATAAGAACAGTC
i caeSp111.Scaffold514  I 7 C 0
s caePb3.Scfld02_62      451808 43 -   783054 ATGAGCAAATTTGTCG---ACGGG-CTCTTGAGAAATGAGAACAGTG
i caePb3.Scfld02_62     I 29 I 916
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-1061.000000
s ce10.chrX             1238993 136 + 17718866 ----TGCAGTG----------TGTGTGTGT---------GTGTTGAAAATAACCTCTACGTTTTCGCT-AGCAACCCACTTGACAAAA-GCACACTGATGGGGCGAGGGGAGTATAACG---GAGTAACATTGATTG-------TCACTAGTAGCACG------------AGCGGACAAAAAA
s caeRem4.Crem_Contig24  324990 118 +  1162296 ----TGCAGTCAAAAA-----TCCCTGTCT--CCTC--------------GTCCCCCTCAATTTCTCAGGGCG---CACTTGACGAAAAGCACACTGATAGAA----------ATAGAGAGTAAGTAACATTGATTTAT--CACTCATCTGTAGTAGA-------------------------
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514   114958 159 -   141934 AAAAGAGAGTCAAAAAATGCTTCTCTGTTTTgcctctcttttttgctgATAGCCTCCTCGTTTTCTTA-GGTG---CTCTTGACAAGA-------TGATGAAA----------ATAGCG---GAGTAAAATTGGTTCATCACACTCATCACTAGAATAAACTGCACACAGagctaataaaaaa
i caeSp111.Scaffold514  C 0 I 536
e caePb3.Scfld02_62      451851 916 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I

a score=1153.000000
s ce10.chrX             1239129 64 + 17718866 GTATGTTGAGATGAATTCTGGTGTTAGCAACAAAAAAAAGAT--ACTACATACACGGCACAGGTAG
s caeRem4.Crem_Contig24  325108 56 +  1162296 GTATGTTGAG--Gaactttgtt--------taaaaaaaagttgaactgGGGTCACAGAATAGTTAG
i caeRem4.Crem_Contig24 C 0 I 293
e caePb3.Scfld02_62      451851 916 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I

a score=0.000000
s ce10.chrX             1239193 1600 + 17718866  
e caePb3.Scfld02_62      451851  916 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117  536 -   141934 I
e caeRem4.Crem_Contig24  325164  293 +  1162296 I

a score=1301.000000
s ce10.chrX             1240793 150 + 17718866 TTTAATTTTAAAATATCAATTTCGTCATGTAAAAATACTTT----------AAACAAA------ACTTGAGTTTTAAGAATTCAAACAAA---------ATGTTCTTGGGAA---AACGAAAAAAATGGAAAAGTCAATCTGAATCCCATTTCAATGGTTTAAAATCTTGAAACTTGT
s caeRem4.Crem_Contig24  325457 175 +  1162296 TTGAAACCtacaaaatttatatttttatgtaagaattttttgtatgtATACATACAAATATTCCACTTCAAAATTGGAAGTTCAAATAAATACCACATGATTTGGTTCGAAATCTGATGAAGCATGTGACAAAA--AATGCGAACTTTATTATA-CATttgaaaatcgtaaaattcGT
i caeRem4.Crem_Contig24 I 293 C 0
e caePb3.Scfld02_62      451851 916 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I

a score=6803.000000
s ce10.chrX             1240943 46 + 17718866 TCATGCATACAAATCACTGCATACATCACTTCACTTTGACTTTTTT----------
s caeRem4.Crem_Contig24  325632 46 +  1162296 TCATGCATACAAATCAGTGCATACATTTGTTCTTCTTCGCTTCTTT----------
i caeRem4.Crem_Contig24 C 0 I 181
s caePb3.Scfld02_62      452767 56 -   783054 TCATGCATACAAATCAGTGCATGCATTAGttattctttatttcttctgacctttct
i caePb3.Scfld02_62     I 916 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I

a score=736.000000
s ce10.chrX             1240989  94 + 17718866 TGTATTCTTATACGTCGTTCCTATTTT--GTTCTATACACGT---CATCATGTATTCaa-----aaaaaatttat--attttttgtttataaCCTCTGTCTTTTTC
s caePb3.Scfld02_62      452823 100 -   783054 tctattcttct-----gtttcttttttcaatgccaTAAAGATTCCCATCGTAAAgtcaatgaagaaaaaagtaatccAATTTTTACGTG-AGCCGCCATTTTTTCC
i caePb3.Scfld02_62     C 0 I 29
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I
e caeRem4.Crem_Contig24  325678 181 +  1162296 I

a score=0.000000
s ce10.chrX             1241083 986 + 17718866  
e caePb3.Scfld02_62      452923  29 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I
e caeRem4.Crem_Contig24  325678 181 +  1162296 I

a score=1012.000000
s ce10.chrX             1242069 34 + 17718866 CTTCCGCTTGTGTATGCATTATTTCCAAATCTGC
s caePb3.Scfld02_62      452952 27 -   783054 cctCCATTTGTTTATGCATTTTT-------CTAC
i caePb3.Scfld02_62     I 29 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I
e caeRem4.Crem_Contig24  325678 181 +  1162296 I

a score=1677.000000
s ce10.chrX             1242103 73 + 17718866 ATTCTTTATAGAA---CAAG--------CTTTGAGAAATTGAAGATAGCAGAAGCAGAGACTG-ACACCA-ATTTTTCTTCCTCTC
s caeRem4.Crem_Contig24  325859 76 +  1162296 atttttcatacaa---CGAGTGACGTGACGTTGAAAAATTG-GGACAATAGAAGAAGCGCGCGTACgccg-atttttcttt-----
i caeRem4.Crem_Contig24 I 181 C 0
s caePb3.Scfld02_62      452979 76 -   783054 -TCTCTTGGACAAGTTTATGTGACGTGACTTCGAGAAACAG-GGGCAGAAGAAAACG-------acgttgaatttttcttttctg-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115117 536 -   141934 I

a score=19909.000000
s ce10.chrX             1242176 116 + 17718866 TCTCTTTGCCCCTTTACTTCCACCTTGGAGATTCCAATTTAAAGCGATCTTCAGGGAATT-----GATGGGATGG---AGGGCTT---TGTCTTTTTTTGCACAAAGTGCACTTGTCCCTGTTTTTT----
s caeRem4.Crem_Contig24  325935 106 +  1162296 ------------tctacttCCACCTTAGAGATTCCAATTTAAAGTGATCTTCAGGGAATT-----GTGGGACGATGGGGGCACTCCCTTCCTCGTTTTTGCAC-AAGTGCACTTg----tgctttttt---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   115653 113 -   141934 ttttttttcttctctactTCCACCTTGGAGATGCCAATTTAAAGTGATCTTCTGGGAATTGTTTGGAGAGGCATT---TGCAC------CATCTTTTTCACAC-AAGTACACATG----TGCTATTT----
i caeSp111.Scaffold514  I 536 C 0
s caePb3.Scfld02_62      453055  95 -   783054 --------------------cacCTTAGAGCCTCCAATTTAAAGCGATCTTTAGGGAATT-----GAGGGAAGTC---GGCGCTC---TCATCTCTTTCGGGC-AAGTACACTTg----tgctttttttct
i caePb3.Scfld02_62     C 0 I 795
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I

a score=374.000000
s ce10.chrX             1242292 70 + 17718866 AGTTTGCTGG---AGGGGAAAATGTTTTTTTTTGCCATAATTGCCATTTTCACTACTTTTTGAAACTTTTCTT---------
s caeRem4.Crem_Contig24  326041 57 +  1162296 tgtttagaaa------agaagacgttttc------aataattgtc----caacttttttttgttattttttct---------
i caeRem4.Crem_Contig24 C 0 I 451
s caeSp111.Scaffold514   115766 77 -   141934 CGTTTGGTGAGCAggcaaaaattgtttttttttg-cataatttca----tatccattttttgtgaattttgaaaagttaaaT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      453150 795 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I

a score=424.000000
s ce10.chrX             1242362 66 + 17718866 TTC--AAGACTTTTAAGTTTGTTGCAAGGTTTTGAGCAAAAATTTGAAAAACGCGAAAATAGGCGTAT
s caeSp111.Scaffold514   115843 59 -   141934 TTCCTGAGGCAGTGCAGTGTTTCTCCAAGTTTTtct----aattcgaaaa-----aaaatcggcaTGT
i caeSp111.Scaffold514  C 0 I 500
e caePb3.Scfld02_62      453150 795 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeRem4.Crem_Contig24  326098 451 +  1162296 I

a score=0.000000
s ce10.chrX             1242428 897 + 17718866  
e caePb3.Scfld02_62      453150 795 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115902 500 -   141934 I
e caeRem4.Crem_Contig24  326098 451 +  1162296 I

a score=3262.000000
s ce10.chrX             1243325 154 + 17718866 GAGGAGAAAAAACATGGAAAACAACCTCAAGTGTCTGTGTGTTTTTCTTCTTCTCTTAAAGAAAAGAAAATTGCCTTCCTCTCGTACCTTTCCAAATGGACATGTCCGTGCGAAAACA--TTTTTCATTTTTACACGAGAGACACTCTTTTTCCCG
s caeRem4.Crem_Contig24  326549 138 +  1162296 gacgaaaaaaaagaagaaaaacattgTCAAGAGT----------GTTTTCCTCTC-------AAAGAAAATTGCCTTTCCCTACTACCTTACTGAATAGA-ATTGACATCTAGAAACGTCTTCTTTACTTTTATTCCCGAAATTCTTCTTATTACG
i caeRem4.Crem_Contig24 I 451 I 597
e caePb3.Scfld02_62      453150 795 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115902 500 -   141934 I

a score=0.000000
s ce10.chrX             1243479 865 + 17718866  
e caePb3.Scfld02_62      453150 795 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   115902 500 -   141934 I
e caeRem4.Crem_Contig24  326687 597 +  1162296 I

a score=-405.000000
s ce10.chrX             1244344 4 + 17718866 ----CCCG
s caeSp111.Scaffold514   116402 4 -   141934 ----cctc
i caeSp111.Scaffold514  I 500 C 0
s caePb3.Scfld02_62      453945 8 -   783054 cccatttt
i caePb3.Scfld02_62     I 795 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeRem4.Crem_Contig24  326687 597 +  1162296 I

a score=36742.000000
s ce10.chrX             1244348 207 + 17718866 ----TCTCTTCTTCACACCCTTCCATTAGCCACTTTCATC---------------GCTAAATAGAACGCGTGCGCACGCGA----------CGTACCCATCCA-ACACTCACACACC-------AA-AAAAATCGATGACGCA-------AATTACCTGCACTCTTCTAACGGCATGTCGGCTAGCCGGACGAGA-------------GGTGGGGAGACGTAGAAGAGACGATTGCCCATGACTAATACGTACCGGGCCGTTTTC
s caeRem4.Crem_Contig24  327284 220 +  1162296 TCACTTTCTCACACTACCCCATCCATTAGCGACTTTCACCC-----------TTCTTTTCATAGAACGCGTAGCCGTGCGCGTGCGCAGCGCACGTACATACCCACACACACGTACC--CGtccaa-aaaaatcgatgacACATCCTCGCAATTACCTTCAC---TCTAACGGCATGTAG--CAGATGGATGGAG-------------------------GACAAGAGACAATTGGCCATGACTAATACCAACTGGACCGTTTT-
i caeRem4.Crem_Contig24 I 597 C 0
s caeSp111.Scaffold514   116406 238 -   141934 ----tctcttttctttgcCCATCCATTAGCGgctttcatttcgaaaaggGTCTTCGATGAAAAGGACGCGTATGTAGACGT-------------GTGCGTGCGCGCACACACGTACT--Cggtcaa-aaaaatcaatgacaCAACATAGCAATTACCTGCAC---TCTAACGGCATGTAG--CAGATGGACAAGG--GAATAcagagagaggaaaagaaaaagagaagactaTTGGCCATGACTAATACCCACTGGACCGTATTC
i caeSp111.Scaffold514  C 0 I 188
s caePb3.Scfld02_62      453953 232 -   783054 ----ttcctcttaCCCACCCATCCATTAGCGGACTTCGgct--------------gaagaaaagagagtgtGTGCGAACGC----------CGGGTCTTCTCACACGTACACGTACTAGCGGCTGACAAAAATCGATGACACATCATCACAATTACCTGCAC---TCTAACGGCGCGCAG--CAGATGGAAAAAGGTGGAGAAGTAGAGAGAAGACGAAGGCCAAAAGACAATTGGCCATGACAAATACCTATCGGACCGTTTCC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I

a score=-6297.000000
s ce10.chrX             1244555 198 + 17718866 -ATCAATCCCAACAGC-----ACCCACCCAC-CACCACAACCTGTCTGCACATTACTGCGTATTGTTTC---CTGAACGTTCGTTTCATTTGTTTTTATTGGATTTCTCGTGATA------GTTCTAGGTGTTTCTTTATAACA-----AAAATTCTAGGCTCATAATTT----------TAAAAACAAGTTTCCCTTTTTTTCAAAACTGAT-CTAGCTAAACTAAACG
s caeRem4.Crem_Contig24  327504 147 +  1162296 -ATTGATTCCGCCGAC-------TGGCCAGACACCCGCAACCTGACACTTCATCACTTCTACCTGTTCCTAc---------------------------------------------------------tcttgatttgaaatt--ttgaaagttttcg----cTAGTTT-----GTGTCAAGCAATGAGTAGCTAAAGGTGTACAAACaaacgttttcagaa-------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      454185 224 -   783054 TCCCGGTTCTGTTGACCAGTTGTCGGCCAAA-GCGCGCGACCTAACACCTCATCACTTCTCTATGTGTCTATCTAAGTGAATGTCTCGGTATTTTTTGTCCGATTC----TGTTACGATcggttttcggtttttttttgaatttcactttAAACTTCCGGTGTCTAATTCtcacagtttccaaaaaaaaaaaacttctgattttcaaattaat-ttttctgtaCGAAACA
i caePb3.Scfld02_62     C 0 I 159
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   116644 188 -   141934 I

a score=538.000000
s ce10.chrX             1244753 57 + 17718866 GGAAGCTTTTTGTTCTATTTGCACAATTTCTAATATTTACTAATTTAGTCATCCCAA
s caeRem4.Crem_Contig24  327651 53 +  1162296 -aaag---tttgatCTATATGTTTTAAATCCGAGTTTTATGACTTCGGTCACCGCTC
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_62      454409 159 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   116644 188 -   141934 I

a score=0.000000
s ce10.chrX             1244810 48 + 17718866 AAAAAACAGATGCTATTTGAACATGAGAACGTAACAAGCGCGTGCCAA
e caePb3.Scfld02_62      454409 159 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   116644 188 -   141934 I
e caeRem4.Crem_Contig24  327704 30 +  1162296 I

a score=152.000000
s ce10.chrX             1244858 86 + 17718866 TTTCAAATAAGCACTGAACACATTCAAAATTGCACTAACCAAGTGTCAATTGCACTGACCAATTTCTAAGAAGCACTGACAAAGTT
s caeRem4.Crem_Contig24  327734 48 +  1162296 TTCCGACTGAAGTTTGAAAACACTAATGATTGT-----------------------------TTTC---------CTGACAAAGTC
i caeRem4.Crem_Contig24 I 30 C 0
e caePb3.Scfld02_62      454409 159 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   116644 188 -   141934 I

a score=-9408.000000
s ce10.chrX             1244944 221 + 17718866 CCAAGAAGCACTGACCAATTTCGAAGAAGCACT----AACCAATTTCTTAGAAGCACTGACCTTATTTAAAACTGCACTGACCAGGCTTGAAGATGCACGAAAGAACTTTTCAACTTGAGCTGACTAACTTTTCAAACGTTTTCAGAAAATCTAAGCGACTTTTTGGCATTTTTCAATTTTCACAAACTAAAATGCTTGTTCGTAAGAACAAGTCAAACAAT-ATT
s caeRem4.Crem_Contig24  327782 139 +  1162296 -----ATATTTTGGTACGTTTCTATAAAATAAT----GA--GATTTTATAAAA-------GTTTGCTttaaatttcactg---------------------------ttttcgat-------------attttcaa-----ttctAGCAGTCT-----ACACTCtc-----tttcaaattccaaaatttcaaatcc-----------aaAAGTTCAAGCActt---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      454568 117 -   783054 ---------------------Ccgaaaaacacttgaaaa--gactaaataaga-tatt--ttttgtttgaaa---cgttt---------------------------tttttcct-------------attttcaa------acaGGAAGTC-------CTCCCGG-----TTTCTAG---CAAAAT----GATTC-----------ATGATTTCCAATAAT----
i caePb3.Scfld02_62     I 159 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                74349 2821 + 21540570 I
e caeSp111.Scaffold514   116644 188 -   141934 I

a score=-5296.000000
s ce10.chrX             1245165 83 + 17718866 AAATCTCACTTGAAAAGAAAAGTGAATTTGCGATAATAATTAACCTGGAAAATGGCGTTAGGTCCGGACGAAAAACGAGATGC
s cb4.chrX                77170 58 + 21540570 aaattccaatttctaaaaacacaGAAATTGCAGCAAAAAGCAAACAAGATGAT-------------------------GGTGT
i cb4.chrX              I 2821 C 0
s caeRem4.Crem_Contig24  327921 57 +  1162296 ------gaatttc--------caaaatttgctGTAATAATTAGATGAGAAAAC---GTTA---------GAAAATTGAGATGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      454685 42 -   783054 -------------------------AATTAGAGAagtaa--aaataagaaaat----taa---------gCAAACTCGGGAG-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeSp111.Scaffold514   116644 188 -   141934 I

a score=56236.000000
s ce10.chrX             1245248 157 + 17718866 AAGTCGTGCGCTAACAAGATTATGGT-A----AAACCTCAGCAGGAGAAGGGAGGCTGTTTTTATTTGCTGACCTCTCGGGATGTTAAACACAACATTTTTGTCC-GGTCAAACAAAGACCCCCACCTGTATTTTCGA---ATCGCAAAAAGTCCTTGACTGCTTT
s cb4.chrX                77228 123 + 21540570 GGGTCGTGCGCTTGCAAGATTATGGTGA----AAACCTCGC------------TAGCAATTTTGTTTGCTGACCTCT-----TGTTACACAC----------TGT-GGTCAAACAATGA-CCTCACCTGTGtttttat-------tagaaagtccttgaactt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  327978 134 +  1162296 AAGTCGTGCGCTAACAAGATTATGGT-A----AAACCTCGG------------CACTGTTTTTATTTGCTAGCCTCTC-GGATGTTAAACACAACATT--TGTGC-GGTCAAACAATGA-CCTCACCTGtgttttcgc-------gaaaaagtccttgaaaat---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   116832 146 -   141934 AAGTCGTGCGCTAACAGGATTATAGT-ATGTGAAACCCCAACC----------CGGTGTTTTTATTTGCTGACCTCTT-GGATGTTAAACACAACATT----TTC-GGTTAAACAATGA-CCTGTCCtgtattttcta--ttttgcaAAAGGTTCTCAACGCCTTT
i caeSp111.Scaffold514  I 188 I 102
s caePb3.Scfld02_62      454727 150 -   783054 AGGTCGTGCGCTAACAAGATTATGGT-A----AAACCTCATCC-----ACAGGCACTGTTTTTATTTGCTGACCTCTC-GGATGTTAAACATAACATT----TGCGGGTCAAACAATGA-CCTCACCTGTGTTTTCTGTCTTTCGCAAAAAATCCTTGAAatgttc
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=2730.000000
s ce10.chrX             1245405 14 + 17718866 TTTCCGTTTTTTTT
s cb4.chrX                77351 14 + 21540570 tgtcaacctttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  328112 14 +  1162296 ttccactttttcct
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      454878 14 -   783054 cttctttctttttt
i caePb3.Scfld02_62     I 1 I 90
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeSp111.Scaffold514   116978 102 -   141934 I

a score=-1834.000000
s ce10.chrX             1245419  4 + 17718866 GACA------------------
s cb4.chrX                77365  4 + 21540570 gtca------------------
i cb4.chrX              C 0 I 148
s caeRem4.Crem_Contig24  328126 22 +  1162296 gTTCTCTTTTCTGCTagtgatg
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      454892 90 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeSp111.Scaffold514   116978 102 -   141934 I

a score=-1439.000000
s ce10.chrX             1245423 233 + 17718866 AAAAATAGTGTCATTGAGCTGAATTTTGCCAATGATACTTTTATTGATTTTCTCAAATAAACAAATAATAATTAATGAATTCAAATTCGAAAATTTCAGAATATAACAAAAATCTTCTAGTTTTCAAGAAAAACTTGTAATGTGCTTCAACTATTTTATTATAACTTTTCAAATCTCTTGAAACTTTAATCTCATGCATGCGTCTGCCAAAGTAGGCGCTGAATAATTTTTCA
s caeRem4.Crem_Contig24  328148 126 +  1162296 aaaaaatgaactattGGGCAGCTTTTggc-----atatttttttctttttttccg-----------------------------------------------------------tttcatttcTCGTCAACATATTG---------------ATTTTATTGTTACCTTCTGGTTGAATCGAAATATTAAT-------------------------ACGTT---TAGTTTCTTA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      454892  90 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                77369 148 + 21540570 I
e caeSp111.Scaffold514   116978 102 -   141934 I

a score=0.000000
s ce10.chrX             1245656 106 + 17718866 ATGCACTGACCAATCTGGATAATGCACTGACCCAGTTGTAAAATGCACTGACCAATCTGGAAAATGCACTGGCCAAGTTGTAAAATGCACTGACAAATTATCGGCC
e caePb3.Scfld02_62      454892  90 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                77369 148 + 21540570 I
e caeSp111.Scaffold514   116978 102 -   141934 I
e caeRem4.Crem_Contig24  328274   0 +  1162296 C

a score=-826.000000
s ce10.chrX             1245762 94 + 17718866 CTATATTTTTAAACTTCAATTTATCAAAACAATTTTCTTTAACAAATTTTTCCATAAGTTATCAGTTTTCCACTTGAAAAAGGGAGAGAAATGA
s caeRem4.Crem_Contig24  328274 46 +  1162296 TCACATCTTT-------------------CATGTTTCTTTATCA-----TT------GTTATCAGTT--------------GGTATAGAG----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      454892 90 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                77369 148 + 21540570 I
e caeSp111.Scaffold514   116978 102 -   141934 I

a score=0.000000
s ce10.chrX             1245856 3 + 17718866 AAA
e caePb3.Scfld02_62      454892 90 -   783054 I
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                77369 148 + 21540570 I
e caeSp111.Scaffold514   116978 102 -   141934 I
e caeRem4.Crem_Contig24  328320 0 +  1162296 C

a score=768.000000
s ce10.chrX             1245859 16 + 17718866 TAATAAGTTTACTTTC
s caeRem4.Crem_Contig24  328320  2 +  1162296 ---TA-----------
i caeRem4.Crem_Contig24 C 0 I 12
s caeSp111.Scaffold514   117080 16 -   141934 TAATACGTTTAGTTTC
i caeSp111.Scaffold514  I 102 C 0
s caePb3.Scfld02_62      454982 16 -   783054 TAATACATTGAGTCTC
i caePb3.Scfld02_62     I 90 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                77369 148 + 21540570 I

a score=93482.000000
s ce10.chrX             1245875 342 + 17718866 TTATCA--------ATTTTTCTTTCTAATTCCCATTCTTATCTGTTGATTTTCACCAGTTTCCACTTCAAAC----CGAACTTGCATA-------ACTTTTT--------TTT-GTT--------TAATTTAATCAAGC----AACTTTCTGAAA--------------TTCAACTGAAATTTTTTCCAGAGACAAACAATGGTGTGCGGAAATTCTTGCATAAAACTATTGTTCTTTGTCATCAATTTTTTCATTTGTATATTTGGAGCACTTATCTGCGGATTCTCGTTGTGGGCAAACTTGGACAAAAACTTTGGAAGCCACTTGTCGGACTTTGTTCGGCAAATTGAAGGAATTGACCAGAAATTGGTTAATGAGATTGCTGAAGTAAGTTT
s cb4.chrX                77517 328 + 21540570 Ttatca--------gtttttgaagttatttttc------------taatt--------------------------ccaatttttgtg-------attttcctCAACGCGTTT-GGTAAAACCAATgtgtttttaattg----aaaactcTAATC----ACAAACTATGTT--TCTAAGTCTTTTTT---AGGT-AATAATGGCGTTAGGTAATTCGTGCATCAAACTTCTCTTCTTTATcatcaactttttcatttgtATTTTCGGAGCATTGATTTGTGGATTCTCACTGTGGGCTAACCTGGACAAGGAATTCGGCACACACTTAGGTGATTTCGTTCGCCAAATTGATGGAATTGACGTGAAACTGATAAATGAAATTGCGgaggtgagttt
i cb4.chrX              I 148 C 0
s caeRem4.Crem_Contig24  328334 314 +  1162296 ttttca--------attttcga-------tttc------------taaCT-----------------GAAAC----CAAACctacata-------acttttttc------ttt-gtt--------tatacttt---ttg----aatacttgtttt----atactttatattgagctcattcttttttttcagac-aaccaTGGCTTGCGGTGGCTCCTGTATAAAGCTGCTCTTCTTCATTGTCAACTTCTTCATCTGCATTTTTGGTGCATTGATTTGTGGTTTCTCGTTGTGGGCCAATTTGGACAAAGACTTCGGAAGTCACTTAGCTGACTTCGTTCGTCAAGTTGATGGAATTGATGTGAAATTGGTTAATGAAATTGCCGaggttggttt
i caeRem4.Crem_Contig24 I 12 I 581
s caeSp111.Scaffold514   117096 307 -   141934 TTATC---------GTTTTTCTGTGTCATTATCA---------GTTGGTT-----------------ATGGT----CTCATTTCGGCAATCAGCCACTCttaaa------tttccat--------ttttcccgtgattca---aattttgtgttT----ACAGATT-----------------------------AACGATGGTATGTGGTAATTCCTGCATAAAGCTGTTATTCTTCgttgttaattttttcatttgcatCTTTGGAGCACTTATTTGCGGATTCTCGTTATGGGCCAATTTGGATAAAGACTTTGGAAGTCATTTGTCTGACTTTGTTCGACAAATTGATGGAATAGACGTAAAACTGGTCAATGAAATTGCGGAGGTCAGTTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      454998 343 -   783054 TTATCACGTTTCATGTGTTTGTGAATCATTATCA---------GTTAGTT-----------------AGAGTTCTCCTCTCTTCTACA-----TAACTTTTGCG------TTT-GAT--------CTTATTTCTGACTCCGAtaactttctgttttccaaCAGAATAT-TT--GGTAACTAAACTTT---CAGG-AAACATGGTGTGTGGTAATTCGTGCATAAAACTTCTattcttcatcatcaatttcttcatttgtaTCTTTGGCGCTCTGATTTGTGGATTCTCGTTGTGGGCCAATTTGGACAAAGATTTCGGAAGCCACTTGGCGGATTTCGTTCGTCAAATAGATGGAATTGATGTGAAATTGGTTAATGAGATTGCGGAGGTTagttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-30454.000000
s ce10.chrX             1246217 163 + 17718866 GACCACCAAATTGTGG-----------------------------AATCTTTTTCAATTAGTTAGGTATCAA------AAAATTTCAAA--------------------------------------------GAAAATCCTGTAGTTTTTGAGAAAT-----TTGCAGATTGGCACGAGTTTATCCTAAAATAAATCCT-----------------AAGA--TTTTTAAGGGGGAAAAAACATCAAAATTGCTTAAACAGTGTTT
s cb4.chrX                77845  65 + 21540570 ---------------------------------------------------ttgaaa---------------------gcgtttccagc--------------------------------------------aaaaaaaaagtggccTGTGTCGACC-----ttgtaga------------------------attttt----------------gaaga--tcttt--------------------------------------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold514   117403 236 -   141934 --------AATTGTATTCCACGTTTCAAATGAGATATTGTGTCTTGTTATTTTAAAACGTGGTTTTTATCAATActatcagttttcaaaaccagGAATGAGgttatttatgaaaaaaattggtctTTGATGCAAAAAATGCCACTTTTTGCATCAAAATGCATTCATTAA-----------TAACATTAAAGTGACATTTTTGCattgaaatgcaaaaatg--tttttca----tgaatGACCCTATAACTA-----AAAAATGCT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      455341 192 -   783054 --------gattg--------------------------------gtt-ttttgaaactaaactTTTATGGGGTCGAAGAAATTCGAACGT------TTTGTTGACATATGGATAGTATCAAACCT-------GAGAATGAAACAATTTCGTTCGAAA-----TCGttaa---------attcacagaaaaat-atttttttgaatcatagCAAAAGAACAACTCTATCA-----AAATAACCACATACCTATatgtaaaaaatta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeRem4.Crem_Contig24  328648 581 +  1162296 I

a score=186414.000000
s ce10.chrX             1246380 451 + 17718866  
s cb4.chrX                77911 470 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  329229 501 +  1162296  
i caeRem4.Crem_Contig24 I 581 C 0
s caeSp111.Scaffold514   117639 436 -   141934  
i caeSp111.Scaffold514  C 0 I 127
s caePb3.Scfld02_62      455533 448 -   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-7118.000000
s ce10.chrX             1246831 78 + 17718866 TGTTAAGAATTTCTAAACTTTTAATC---ATTAAAA--------ACTGAATGCCTACCAAAAAACAGTAAAAAATATGATAATTTATTC
s cb4.chrX                78381 25 + 21540570 -----------------------------TTagtaa-----------------------------------aaagtcaaaaattgtttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  329730 20 +  1162296 -----------------------------ATTACAG----------------------------------------TAAACATCGATAC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      455981 85 -   783054 ----TGGAGTTTTTAGGATACTATTTTAGATTATAAAAGAATATAttcaataacttcaaaaaaaatttgtcaaatataacaattttttc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeSp111.Scaffold514   118075 127 -   141934 I

a score=-21521.000000
s ce10.chrX             1246909 401 + 17718866 TACAAGTCTTCAAGCGTAATATTAGGTTAACCACTTTTATTAAACCGACATAAAAAATTTGAAAACTTGTGGCACTGACCAAAAAATATTTGGTTCTGTTCGAAATCACTGttttatttaaaaaaaatttaaCGAACAGATTACCTACAATGAAACTGTTTTGTAGATAAAAGTGTTTTTGTTTGTTGAAATAATCCTAG----TAACTATCTAAATCATTCTCTAGACATGTTCGAATCACTGACCAAGTTTTCTGTTGCACTGGCCAAATTTTCTGTAGCACTGACCAAACATTTTCTTTCGCACTGACCAAACATTTTCTTTCGCACTGACCAAACATTTTCTTTCGCACTGACCAAAAAAAGTTTCCAACTCCTCTTAAAAATACAACACAAGTCAAGACT
s cb4.chrX                78406 135 + 21540570 taaTGTTCT-----------------------ATTGGTCT---ACCGATGTGAAAACTGTA-----------TACAAAAGAAAAAGCA------TGCAATTGAGGTAACC-----------ACAATAT---------------------------------------TAATAATAT----------------------------TAATGCACAAAACc----------------taaaatactga------------------------aattcatTTTACCA----------------------------TAAACATTTATT------------A---------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  329750 168 +  1162296 Tgagaattt-----------------------gtttttgt----------tggaaacCGTG----------------------------------GTATTAATGGTTACT--------TGAAAGAAAT---------------------------------------TCATGGATTTTCCGATCGCCGCGGTAA---TAGAGAGTAACCGACCAACTT----------------CCAACTGGTTATCAGTTCT----------------AATCCGCTAGAACA----------------------------CAAAAATTCTCT------------AAAC----TCTTTCG--------------AATACCCAATT------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      456066   0 -   783054 C
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e caeSp111.Scaffold514   118075 127 -   141934 I

a score=-1250.000000
s ce10.chrX             1247310 10 + 17718866 AAACTCCAAT-
s caeRem4.Crem_Contig24  329918  2 +  1162296 --------GT-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      456066 10 -   783054 -aatttctatg
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                78541  0 + 21540570 C
e caeSp111.Scaffold514   118075 127 -   141934 I

a score=70718.000000
s ce10.chrX             1247320 292 + 17718866 TTTCAGGCCCCGGTCAACTGCTTCGACCGAATCTCACATATGGTACAATCATGGGGCGAATCCATTGTGGTGGTCGCTTTCCTGCTTCTAGCAATCGAGCTGTTCGCAATCCTGTTCTCTTGCATTTTGTGCAGATCATCGCAAGAAATCCGTTACACTCCGTACTATTCGT-AATTGATTCGGTATGAAAATTGAAACATTTTCT----CAAATAACGTTGCTCCTCAATTTAGACAGCTTATTTTTATTTGGTTCTATCAAAAAAAATTCTCAACAAACAT-----AGTTGAAAATTTCT--
s cb4.chrX                78541 263 + 21540570 TTACAGTATCCTGACAATTGCTTCGATAGAATCTCTCATATGGTACAGTCTTGGGGAGAATCGATTGTTGTTGTTGCATTCATTCTTCTCGCCATTGAATTATTTGCTATTCTTTTCTCATGCATCTTATGCAGATCATCACAAGATATTCGTTACACTCCATATTATTCTT-AAATTGTTT--CAAAGAAATTACTTAGTATTTT----CGCAT--CTTCATTgtaa-------------tgaattttttccatCT-------------TCTTAATCGA-AT-----ATATTCTGGATTGTCC
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig24  329920 270 +  1162296 TTTCAGCATCCAGACAACTGCTTCGACCGAATCTCACATATGGTTCAATCTTGGGGAGAGTCAATCGTCGTCGTCGCCTTCTTGCTATTAGCCATCGAACTCTTCGCTATCCTATTCTCATGCATATTGTGTAGATCATCCCAAGATATTCGTTATACTCCCTACTACTCTT-AAATC-------------ATTGTTTGGAATTTG----GGTATTGCTTTAAAGTTAGGCGAAAAACGTTTGAGGATTGTCAAACTAAAC-------GCTTTTGGtcaa-ac-----a---ttgaaacaatAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   118202 284 -   141934 TTTCAGCACCCGGATAATTGCTTCAACAGAATCTCTCACATGGTTCAATCGTGGGGAGAATCCATTGTTGTCGTCGCGTTTCTACTTCTTGCCATTGAATTATTTGCTGTCCTTTTCTCTTGCATTCTTTGCAGATCCTCTCAGGACATTCGTTACACACCGTACTATTcttaaaaat-------------tacattttgttttttttgctgaaa--cGGCGCGGCAA-TTAACAACAATTCAAATACTTTCATTACATac-tcaaaaagtttcaacaAT-ACTGAAAAgattacaattttt--
i caeSp111.Scaffold514  I 127 C 0
s caePb3.Scfld02_62      456076 233 -   783054 tTTCAGCACCCGGATAACTGTTTCGACCGAATTTCTCATATGGTTCAATCTTGGGGAGAATCTATCGTTGTCGTTGCCTTCCTCCTTCTGGCTATTGAACTTTTTGCTATTCTATTCTCATGTATCCTTTGTAGATCATCTCAAGACATCCGTTACACTCCTTATTACTCTT-AGACt-------------gatatatttattttt----tgaac--cg------------------------------ttCCCT-------------AGTCTCAATCAT-TT-----AGCTCACTATTTGT--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=-4451.000000
s ce10.chrX             1247612 19 + 17718866 TGATAGCGTCT----GAGAAATG
s caeRem4.Crem_Contig24  330190 15 +  1162296 CAAGAGCATTTCATT--------
i caeRem4.Crem_Contig24 C 0 I 16
s caeSp111.Scaffold514   118486 11 -   141934 tgaaaaccttg------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      456309  1 -   783054 T----------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I
e cb4.chrX                78804 11 + 21540570 I

a score=-17279.000000
s ce10.chrX             1247631 191 + 17718866 AGCTTATCC---TCTTAATC---------------CATGCTCATTCCGTT----------------CTCCTTCTCATGCTAACTCTGATTTGAT---CTACCTCGGGT---TTTTCTGTCCTATTGTCTTTTTTTCTTTTTTTTTTGAAACATATTCAACTAGCTTT------------------GCATTTATTTTTTTAACTTTCCCAAATACGTTATTCTCCTGAAAACAGTTTAATTGTCAACTTC
s cb4.chrX                78815 111 + 21540570 AGCTCAACCGTTCCCTATTC-----------------CTCACTTTCGTC--------------------TCTCTTATTTTAGCTCTGATTGGTGTGTCTACCTCGGGT---TTTGA--------------ATAATATATTTCAGTTGAATGt---------------------------------gcattcaaaat---------------------------------------------------tt
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig24  330221 167 +  1162296 Cgctcatttgtttttttttc--------------gttttctcattcCTCA------------AACACTTTCTCTCATTCTAACTCTGATTTGATGTTCTACCTCGGGT---TCCGc--------------cttattttttttatttgactgttttccaataa------------------ttcaaatcttcaatattagatgttt---gaaaactttattt------------------tgccAACATT
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold514   118497 156 -   141934 -ACTTTCTTCTATCTCATTCAACCAGCTCATTgctttttcccatttctttGCTGCTATTTACCACAAAAATTCTCAATCTAACTCTGATTTGATGTACtttttcgggt--------------------------tcttttgtttttgaatcatttttg----------------------------catttat----------------atatttttattt----------------------aattta
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      456310 184 -   783054 ------------TCCCATTC-------------CTTCCACTCACTTCTTT------------CAC-GACCTTCTCATGCTAACTCTGATTTGATTTTCTACCTCGGGTGTACTCTC--------------TGAACTTTTTGCTTTCTAGACTttcttgataacttttttttattttttgttttgaacatttatttatatttcttg---aacatttttatttgc-----AA-----TAACATTCAGTTTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   98105 1107 -   140921 I

a score=40855.000000
s ce10.chrX             1247822 151 + 17718866 ATTCACTTTTGTTCTCA--------CAATAACATATTGCAATAAGTAAATTAAAT-CAATAAATTTGATGTATC--AACCAAATCGTAAATGACCGTCTGGTTTCTTGTAAAGCTGCATGATATTGCTCCGGAAACCGTCTATCCAGGAGTGCTTCTG---GGTG
s cb4.chrX                78926 138 + 21540570 attcatCTC---ATCCA---------TTCTCAGTGTTAGGACAA------TAAAt-catttaat-----atttttcaaccgAAACGCAAGTGTCCATCTGGTTTTCTGTATAACTGCATTATATTGCTTCGAAAGTCGTCAATCCAGGAGTGTTTTTG---GTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  330388 138 +  1162296 ATCCATCTC---Atccg--------cttcttttttttgcaataa------taAATACGATCAAA-----GGATT--AACCGAAACGCAAATGTCCATCTGGTTTCCTGTATAACTGCATTATATTGCTCCGGAAGCCATCAATCCACGagtgtttttg---agaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   118653 122 -   141934 aaaCATGTT-----CCA----------------TTTCATAAGTA------AAACT-TGAATAA--------ATC--ATCCGAAACGCAAATGCCCATCGGGTTTTCGATACAACTGCATTATATTATTACGAATACCGTCAATCCAGGAATGCTTCTG-----AG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      456494 138 -   783054 ACTCAtctc-----tca-------atttcagtttttagcaACGA------ACACT-CAAATTAT------TATT--ATCCAAAGCGCAAATGCCCGTCTGGTTTTCGGTATAATTGCATTATATTGTTGCGAAATCCGTCAATCCATGAATGTGTCTGCATGTAC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   99212 153 -   140921 ATTAGCTTTAACTCTCAACAGACTATCTTGTGATTTTACCAAgc------acatt-tgcaaaaaatgggcTATT--TCCCAAACCGTAAATGCCCATCAGGTTTTCGAAATAATTGCATTATATTAAATCTGGTATCGTCTTTCCACATTGGTTTTTG---AGCG
i caeJap4.Scaffold17966 I 1107 I 258

a score=-3080.000000
s ce10.chrX             1247973 6 + 17718866 TAGCTT-
s cb4.chrX                79064 6 + 21540570 TACGCC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  330526 6 +  1162296 aaagct-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   118775 7 -   141934 AATGATT
i caeSp111.Scaffold514  C 0 I 106
s caePb3.Scfld02_62      456632 7 -   783054 GAAGGTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   99365 258 -   140921 I

a score=5432.000000
s ce10.chrX             1247979 47 + 17718866 --------GGCCCAGTTGATGAAGCATCAGCGGCAACACGGAAGTTTCTGGAATA
s cb4.chrX                79070 53 + 21540570 --GGTGATATAGATGTCACAGGGAAAACAGTGGCAACAcggaagtttctgaaata
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig24  330532 53 +  1162296 --GGTTGAACGGAGGATGTTGAAGATGCGGATGCAACACGGAAGTTCCTGGAATA
i caeRem4.Crem_Contig24 C 0 I 77
s caePb3.Scfld02_62      456639 53 -   783054 GGATCGACGAGGAAGGCAATGAAGATGACGATCCAACATGGaagtttctgcaa--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   99365 258 -   140921 I
e caeSp111.Scaffold514   118782 106 -   141934 I

a score=-6595.000000
s ce10.chrX             1248026 429 + 17718866 TCGAAAATTTAGAAAACCAAACTTGGTTAGGTTGGACTTTTCGGTCGGGGACTGGGATCACATTGCTTTAAAGTGAATTTACCCCCTAAACCCGGTTAAAAACTTTTTAAGGCTTTTTCAGCTCTGAACGTGGCTCTGCCAATTTGATAAAAACGCCACAGTCCTAATTAACTTCAAAGTTGCTCGCCGAGCCCAGCTATTCCAGGAGTGTGATGCCTGGCTACCGAAAAAGTCGTGCCGGAGTCATGTTGGCGCACAGTGCTCAAGTTTTCTCTCATTATAAAGTGCAAATTATTCCTAAAATTTGTATGCATTTTTTGGTAAGTCTTGTCATCTTTGTCAAGTTTTAGTTGCCCAGAGCGCGTAGCTACTGCATCATTCAAAAATTGCTGAACCCTCAAAATGTCGGCTGCTTCTACTTTTCAACTT
s caePb3.Scfld02_62      456692 165 -   783054 ---aaaatt--------------------------atgtttcagc--GCGAATGGATGCACAATGGTCTCAA---AATGTA--------------TAATGAACATTT-----CGTTTTCG----------------------------------------------------CTAAAATTTGC---------------------------------------------------------------TGTTAATGCACTGTG--------------------AAATTAGGAATTAAGGTTAAAAATTA--------------------------------------TTCGATCTACCAGAATGAAT-----ttggagaattgaaaaa-------------aaaatatcag--------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   99365 258 -   140921 I
e cb4.chrX                79123  26 + 21540570 I
e caeSp111.Scaffold514   118782 106 -   141934 I
e caeRem4.Crem_Contig24  330585  77 +  1162296 I

a score=450.000000
s ce10.chrX             1248455 14 + 17718866 TAATGTTTAACTCT
s caeSp111.Scaffold514   118888 14 -   141934 tgacattttatttt
i caeSp111.Scaffold514  I 106 C 0
e caePb3.Scfld02_62      456857  0 -   783054 C
e caeJap4.Scaffold17966   99365 258 -   140921 I
e cb4.chrX                79123 26 + 21540570 I
e caeRem4.Crem_Contig24  330585 77 +  1162296 I

a score=-420.000000
s ce10.chrX             1248469 4 + 17718866 ATAA-
s caeRem4.Crem_Contig24  330662 4 +  1162296 ataa-
i caeRem4.Crem_Contig24 I 77 C 0
s caeSp111.Scaffold514   118902 4 -   141934 -tcat
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      456857 0 -   783054 C
e caeJap4.Scaffold17966   99365 258 -   140921 I
e cb4.chrX                79123 26 + 21540570 I

a score=-1055.000000
s ce10.chrX             1248473 7 + 17718866 AACACTC
s cb4.chrX                79149 7 + 21540570 AACTCTC
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24  330666 7 +  1162296 aataaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   118906 4 -   141934 ---aacc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      456857 2 -   783054 -----tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   99365 258 -   140921 I

a score=65940.000000
s ce10.chrX             1248480 193 + 17718866 ACCTGTTGACTCTAAATTCTTGCTCCTGCTTGTCAAACTCCGACTGATTCACATGTTCTCGAGAATCTAAAATCTCGATTTCTCC------TTTCAAAAAAAACTTATCTA------------ACTCACGGAGCCCATTGCAAATTCCAACGACTGCTTTGTGGAGAACTACAGCGCCTGTTTCCTTGTCTCGAAATTTGAGAGATCTAAA-------
s cb4.chrX                79156 192 + 21540570 ACCTAGTGAACCGAAATTCCTGTTCCTCCGCGTCGAACTGTGTTTGATCAACTGCTATACGACCATCTGGAAAACAgaggttttt------tttgc-aaatttttgataac------------acTTACTCATTCCATAGCATATGTCCACAACCGCTTTGTGTATCATCACTGCTCCGGTTTCTttgtttcggaatttcagtgatcttaa-------
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  330673 192 +  1162296 accTTGTCAGGCGGAACTCTTGCTCTTCAACATCAAACTGTGATTGATTGACGTATTCTcgagaatctgaaaagta------------------cc-aaatttttcataatcacACAAACAAAACTTACTCAATCCATTACAAATGCCAACCACAGCTTTGTGTAACACAACTGCCCCTGTATCTCGGTCCCGGAATTTTAGCGATCTTTA-------
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514   118910 194 -   141934 ACCTGTTAGCTcgaaacttcttttcttctttttcaaactctgCCTGGTTGACATATTCCCTTGAGTCTAAAA--CCAGTGTTACTAGAAGGCTTTC---AACGTCAACTTC------------ACTTACTTGAGCTGCTACATATACCAACAACTGCTTTATGCAACACCACCGCACCAGTTTCTTTGTCTCTGAACTTCaaagatctgaa-------
i caeSp111.Scaffold514  C 0 I 25
s caePb3.Scfld02_62      456859 192 -   783054 aCCTATTCAACCGAAAAGCTTGTTCTTGTTCATCAAATTCCGATTGATTGACGTATTCTCGTGAGTCTGAAATCTCAGGCAtacc------ttttc-aaaacttctgttCA------------ACCTACTCAAGCCATTACAAACTCCCACTACTGCTTTGTGAAGAACCACAGCACCAGTTTCTTTGTCCCGGAACTTTAGTGATCTAAA-------
i caePb3.Scfld02_62     C 0 I 39
s caeJap4.Scaffold17966   99623 209 -   140921 acCTATTTAGCTGAAACTCTCGTTCTTGTTGATCGAATACAGTTTGATTCACAAAGTACTGATCATctgtaaa-ttatttttttt------gttac-aaaatacacatttt-ttactgtttttttttacatcgtCCTGTGCAAAATTCGATGACTGCTTTGTGAAGGACAACAATGCCAGACTTTCGGTCTCGAAACTTCAGGGATCTGCGgaataaa
i caeJap4.Scaffold17966 I 258 C 0

a score=-368.000000
s ce10.chrX             1248673 4 + 17718866 CTTT---
s caeJap4.Scaffold17966   99832 5 -   140921 --ttatt
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      457051 39 -   783054 I
e cb4.chrX                79348 4 + 21540570 I
e caeSp111.Scaffold514   119104 25 -   141934 I
e caeRem4.Crem_Contig24  330865 2 +  1162296 I

a score=-1295.000000
s ce10.chrX             1248677 15 + 17718866 TTCTTTTTTGCATGT
s cb4.chrX                79352 15 + 21540570 aaaaaaatggcattt
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24  330867 15 +  1162296 TATTGGATTATATGG
i caeRem4.Crem_Contig24 I 2 C 0
s caeJap4.Scaffold17966   99837 15 -   140921 ttaatttctgGATGT
i caeJap4.Scaffold17966 C 0 I 540
e caePb3.Scfld02_62      457051 39 -   783054 I
e caeSp111.Scaffold514   119104 25 -   141934 I

a score=-150.000000
s ce10.chrX             1248692 1 + 17718866 G
s cb4.chrX                79367 1 + 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  330882 1 +  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      457051 39 -   783054 I
e caeJap4.Scaffold17966   99852 540 -   140921 I
e caeSp111.Scaffold514   119104 25 -   141934 I

a score=-3101.000000
s ce10.chrX             1248693 19 + 17718866 TTCTTGGGGGAAAATTCTG--
s cb4.chrX                79368 18 + 21540570 ---tcattttttaaaacgaaT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  330883 16 +  1162296 ---TTGGCATTGAAAACTG--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   119129 10 -   141934 tttttggttt-----------
i caeSp111.Scaffold514  I 25 C 0
e caePb3.Scfld02_62      457051 39 -   783054 I
e caeJap4.Scaffold17966   99852 540 -   140921 I

a score=91.000000
s ce10.chrX             1248712 1 + 17718866 T
s caeJap4.Scaffold17966  100392 1 -   140921 T
i caeJap4.Scaffold17966 I 540 C 0
e caePb3.Scfld02_62      457051 39 -   783054 I
e cb4.chrX                79386 0 + 21540570 C
e caeSp111.Scaffold514   119139 0 -   141934 C
e caeRem4.Crem_Contig24  330899 0 +  1162296 C

a score=69782.000000
s ce10.chrX             1248713 156 + 17718866 CCTACCTATAATTTGGGGTACATTTCAAGTCCTGACTGCTTAGAACGTCCAGCTCCCCGTTCTCAACAACGAGGTCACAAATGCAACGGTTATATTGAGTAGGGACCACACTTTCTGTCATTTTTATCATTTCACACCGGGGAACGCATTCTGGAA
s cb4.chrX                79386 156 + 21540570 TATACCTGAAATTTGGTACACAATTTAGCTTGTCATGGCTAAGGTTTCCTAGTTCTTTTTCTTCGACCACCAGATCACAAACACAACGATTGTATTGACTTGGAACCATGTTTGAGTTCATTGTTATCATCTCACAACGTGGAATACACGCTGAAA
i cb4.chrX              C 0 I 1116
s caeRem4.Crem_Contig24  330899 153 +  1162296 ---ACCTATAATTCGGTGTGCACTTCAGTTCCTGGTTGCTGAGATTTTCAagttctccattttcaacAATCAGGTCGCAGACACATCGATTGTATTGTGTTGGAACAACATTAGCCTCCATTTTTATCAGTTCACATCTTGGAACACattctaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   119139 156 -   141934 cttacCTGTAATTGGATACACATTTTGCTTCTTGATTGCTCAAATATTCTAGGTTATTATTTTCAAGGATCAAATCacaaacacattttctgtaCTGCGATGGAACAACATTATGTGCCATTTCGACGATTTCACAACGAGGAACGCATTCTGGAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      457090 156 -   783054 CGAACCTGTAAGTAGGCGTACATTTGAGCTCTTGATCACTCAGATTTTCCAGTAACCCATTCATCACAACGAAATCACAAACACATCGGTTATACTGGTCCGGAACAACATTTGCTGTCATTCTAACGTTTTCACAGCGAGGAAtgcattctgaaa
i caePb3.Scfld02_62     I 39 C 0
s caeJap4.Scaffold17966  100393 150 -   140921 CTCACCTGTAATTTGGCAAGCATTGGAAAGCCTCGTTGTTCGGA------ATAACTCTACTGTGTGCTGTCCTTTCACAAACACACCGATTATATTCCGAAGGAACTATGGCCCGAGACAGTTTGACCAATTCACATTGCAGTTTGCATTCTATGA
i caeJap4.Scaffold17966 C 0 C 0

a score=546.000000
s ce10.chrX             1248869 1 + 17718866 A
s caeRem4.Crem_Contig24  331052 1 +  1162296 a
i caeRem4.Crem_Contig24 C 0 I 945
s caeSp111.Scaffold514   119295 1 -   141934 A
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966  100543 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 444
e caePb3.Scfld02_62      457246 0 -   783054 C
e cb4.chrX                79542 1116 + 21540570 I

a score=151.000000
s ce10.chrX             1248870 3 + 17718866 ATT
s caeSp111.Scaffold514   119296 3 -   141934 ACT
i caeSp111.Scaffold514  C 0 I 203
e caePb3.Scfld02_62      457246 0 -   783054 C
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeRem4.Crem_Contig24  331053 945 +  1162296 I

a score=719.000000
s ce10.chrX             1248873 33 + 17718866 TTATATATTGAAAATCTCAATGGTTTTGTATAT
s caePb3.Scfld02_62      457246 22 -   783054 ttatacATT-----------TGGTTTTTCACAT
i caePb3.Scfld02_62     C 0 I 109
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119299 203 -   141934 I
e caeRem4.Crem_Contig24  331053 945 +  1162296 I

a score=0.000000
s ce10.chrX             1248906 757 + 17718866  
e caePb3.Scfld02_62      457268 109 -   783054 I
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119299 203 -   141934 I
e caeRem4.Crem_Contig24  331053 945 +  1162296 I

a score=1535.000000
s ce10.chrX             1249663 129 + 17718866 AAAATGAA--TACCTGCAAGATTTTGCTCGGCAGAATAGTTAAACTGT---------ATGAAAAGGAGCAGTAGAGTTAGCA-TTTTTGAGAATACTAAAAACAGCTGGTAGCTTCTTTTTGTTTTTAAATACTGGTGTCA
s caePb3.Scfld02_62      457377 139 -   783054 aaagtgaagttaCCTGTTAAACTTTGTCCATTAGCATAGAAGACATGGCACAAtacaaagaaaatgagcattctCACCAACACTTTTTGTGCAAAATGGAA-CGTGGAATAAATTTTCTTAGCTTTTAAA-ATGGGTGTCA
i caePb3.Scfld02_62     I 109 C 0
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119299 203 -   141934 I
e caeRem4.Crem_Contig24  331053 945 +  1162296 I

a score=-813.000000
s ce10.chrX             1249792  9 + 17718866 ------------ACACTA----AGA
s caeSp111.Scaffold514   119502  9 -   141934 ------------ATATGA----AAG
i caeSp111.Scaffold514  I 203 C 0
s caePb3.Scfld02_62      457516 25 -   783054 ATAAGCTATCTTATATCAAGTCAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeRem4.Crem_Contig24  331053 945 +  1162296 I

a score=23704.000000
s ce10.chrX             1249801 163 + 17718866 AGCACTTGAAAGCTGATCGTTTTGGAGCCTTTCGGAGGCTCCGCGCGCGAGGCGTTTCATTTTAT------TTCCGCCTCAAAA-----CGCC-----CTCTTTGTCACAATTTTTGGTCCATTATA-----------------GCCAAAAGTAGTCATCAGATTTCTCCCGGCGTGTCGG-----TTTCTGTTTGTTTTT
s caeRem4.Crem_Contig24  331998 165 +  1162296 AGCCCTTGAAAGCTGATCGTTTTCTAGCC-CAGAAAAC----------Gaaggttttcaatttta------ttttgtccAGAAAGCCT---CC-----CTCTTTGTCACAATTTTTGGTCCATTATGCGTAGGCCGCCTCCATTTCCAGAAGTAGTCATCAGATTTCTTGAGGG-CGTCgg-----tttctgtttg-----
i caeRem4.Crem_Contig24 I 945 C 0
s caeSp111.Scaffold514   119511 170 -   141934 AGCACTTGTAAGCTGATATCTTCTcgtagagagaaaaaca-------aaaagctttttatatttt----------------acaGTCAAGGCT-----CTCTTTGTTACAATTT-TGGCCCGTTATGCGTAGGCTGTGTCCGTTTCCAAAAGTAGTTATCAGATTTCTTGAAGA--GTGGGTGTTgcttttgtttgttttc
i caeSp111.Scaffold514  C 0 I 455
s caePb3.Scfld02_62      457541 181 -   783054 AGC---TGAAAGCTGATATTTTTCTAGCCTCACAAAACAT-------AGAagctcttcattttttcatttttcgtgcCCTGATAGCCCTTGCCTCTCATTCTTGGTCACAATTTCTAGTCCATTATGCGTAGGCCGCCTCCATTTCCAGAAATAGTCATCAGATTTCTTAAGCG--GT--------TCTCTGTTTGTTTTT
i caePb3.Scfld02_62     C 0 I 670
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I

a score=0.000000
s ce10.chrX             1249964 2 + 17718866 CA
e caePb3.Scfld02_62      457722 670 -   783054 I
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681 455 -   141934 I
e caeRem4.Crem_Contig24  332163 0 +  1162296 C

a score=1082.000000
s ce10.chrX             1249966 123 + 17718866 TTTTTAACCACACTTCTTCATCTCCCCCCCATTTCAATTTTGAATGGAGCCGGGAGGGGAGGGGATTTTTCAGCGCTGAATTTTATTTTCATCCACAAACCACACAATTTGCATTTGCGTGGG
s caeRem4.Crem_Contig24  332163 103 +  1162296 tttttggCCCCGGgttttcttcacttttgaaat--atctttGAATGACTC---------------TCTTTCA--GCTGAATCTTGCTAAAGAATACAAAACACAC-ATTCGAGTGTGTGTggg
i caeRem4.Crem_Contig24 C 0 I 675
e caePb3.Scfld02_62      457722 670 -   783054 I
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681 455 -   141934 I

a score=0.000000
s ce10.chrX             1250089 1681 + 17718866  
e caePb3.Scfld02_62      457722  670 -   783054 I
e caeJap4.Scaffold17966  100544  444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681  455 -   141934 I
e caeRem4.Crem_Contig24  332266  675 +  1162296 I

a score=2447.000000
s ce10.chrX             1251770 58 + 17718866 TTCGGTCACTTCTCTC---AAATTTGACCAATCATCTCTCTTATGACAAGCTTCATTTACA
s caeRem4.Crem_Contig24  332941 61 +  1162296 ttcattcgtttttctttctaaaGTAAACCAATTATGTATTTGTTGACAAGCTTCATTTACa
i caeRem4.Crem_Contig24 I 675 I 69
e caePb3.Scfld02_62      457722 670 -   783054 I
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681 455 -   141934 I

a score=0.000000
s ce10.chrX             1251828 157 + 17718866 AATCTTCATATGTGAAACATAATAGGCTGAATCAGCAACATACTGACGGAAACGAAAAAAAAAGTAAAAAAAAAGAACATCAAAATCAAATAAATTAGGTTTTAGAAGCGTTTTGAAACAATGACGGAATGATTTATTGTTACCCTACATGTTTTCT
e caePb3.Scfld02_62      457722 670 -   783054 I
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681 455 -   141934 I
e caeRem4.Crem_Contig24  333002  69 +  1162296 I

a score=128.000000
s ce10.chrX             1251985 5 + 17718866 TAAAC
s caePb3.Scfld02_62      458392 5 -   783054 TGAAA
i caePb3.Scfld02_62     I 670 C 0
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeSp111.Scaffold514   119681 455 -   141934 I
e caeRem4.Crem_Contig24  333002 69 +  1162296 I

a score=273.000000
s ce10.chrX             1251990 1 + 17718866 A
s caeSp111.Scaffold514   120136 1 -   141934 A
i caeSp111.Scaffold514  I 455 C 0
s caePb3.Scfld02_62      458397 1 -   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  100544 444 -   140921 I
e cb4.chrX                79542 1116 + 21540570 I
e caeRem4.Crem_Contig24  333002 69 +  1162296 I

a score=129576.000000
s ce10.chrX             1251991 179 + 17718866 ATCACAGCTGCTCATCTTGCTCCATCGCACTCAGAATCATACTTTCATTCATTCTCTGGAAGGTTGCTGGCTCTGCAGTAGTTACCGTCTTACAGCCTCCACGGCTTCTGAATTCAGTGCGCATACTTTTCTTGAGCGACTCTTGCTCTCCAAATATCACGACTCGAAGGGATCTGGAA
s cb4.chrX                80658 173 + 21540570 ATCATAATTGTTCATCGTGCTCCATCGCACTCAGAATCATGCTTTCATTCATCCTATGGAATGTCGTTGGCTCGGTAGTCGTAACAGTTTTGCATCCTGCTCGATTTCTACACTCGG------TCCTCTTTTTTAACGATTCCTGttctccaaaaatcacaattctCAAAGACCTGAAA
i cb4.chrX              I 1116 C 0
s caeRem4.Crem_Contig24  333071 179 +  1162296 aTCACAGTTGCTCGTCTTGTTCCATAGCACTCAAAACCATACTCTCATTCATTCTCTGGAACGTGGTTGGCTCTGCAGTGGTAACCGTTTTGCATCCAGCACGATTTCTACATTCAGTGCGCATACTTTTCTTCATTGATTCTTGTTCGCCGAAAATCACGACTCGTAGAGATCTGAAA
i caeRem4.Crem_Contig24 I 69 C 0
s caeSp111.Scaffold514   120137 179 -   141934 ATCACAGTTGTTCATCATGTTCCATCGCACTCAAAACCATACTTTCATTCATCCTGTGAAGCGTAGTTGGTTCCCCGGTAGTGATTGTTTTGCATCCAGCACGATTGCGAAGTTCTGTGCGTGTAGCCTTTTTGAACGATTCTTGCTCACCAAAAATAACCACCCTCAGGGATCTTAAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      458398 179 -   783054 ATCACAGTTGCTCATCTTGTTCCATAACACTCAAAACCATactttcattcattctgttGAATGTAGTAGGTTCTGCAGTGGTTACCGTTTTACATCCACCCCGATTGCGAAACTCGGTACGAGTCGTTTTCTTCAATGCCTCCTGCTCACCAAATATGACAACCCGGAGTGATCtgtaa
i caePb3.Scfld02_62     C 0 I 90
s caeJap4.Scaffold17966  100988 176 -   140921 ATTACAATTGTTCGTCCTGTTCCACAATACTAAGAACTAGGCTTTCATTCATATTCTGACAACTGGTTGGTTCT---GTGGTCAACGTTTTACATCTTGCTCTGCTTTTGAATTCTGTTTTCAGGTCTTTCTTGACTGATTCTTGCTCTCCAAATATGGTTATTCTCAGTGATCTGGAA
i caeJap4.Scaffold17966 I 444 I 290

a score=67.000000
s ce10.chrX             1252170 1 + 17718866 T
s cb4.chrX                80831 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  333250 1 +  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120316 1 -   141934 T
i caeSp111.Scaffold514  C 0 I 7
e caePb3.Scfld02_62      458577 90 -   783054 I
e caeJap4.Scaffold17966  101164 290 -   140921 I

a score=-1511.000000
s ce10.chrX             1252171 13 + 17718866 ATTGCGATATTTT-
s cb4.chrX                80832 13 + 21540570 agagagaaaattt-
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig24  333251  9 +  1162296 At-----gcatttt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      458577 90 -   783054 I
e caeJap4.Scaffold17966  101164 290 -   140921 I
e caeSp111.Scaffold514   120317  7 -   141934 I

a score=186.000000
s ce10.chrX             1252184 9 + 17718866 TTTGAATTT
s caeRem4.Crem_Contig24  333260 9 +  1162296 atttatttt
i caeRem4.Crem_Contig24 C 0 I 16
e caePb3.Scfld02_62      458577 90 -   783054 I
e caeJap4.Scaffold17966  101164 290 -   140921 I
e cb4.chrX                80845 18 + 21540570 I
e caeSp111.Scaffold514   120317 7 -   141934 I

a score=0.000000
s ce10.chrX             1252193 1043 + 17718866  
e caePb3.Scfld02_62      458577   90 -   783054 I
e caeJap4.Scaffold17966  101164  290 -   140921 I
e cb4.chrX                80845   18 + 21540570 I
e caeSp111.Scaffold514   120317    7 -   141934 I
e caeRem4.Crem_Contig24  333269   16 +  1162296 I

a score=493.000000
s ce10.chrX             1253236 8 + 17718866 TTAAAATG
s caeSp111.Scaffold514   120324 8 -   141934 TCAGAATG
i caeSp111.Scaffold514  I 7 C 0
e caePb3.Scfld02_62      458577 90 -   783054 I
e caeJap4.Scaffold17966  101164 290 -   140921 I
e cb4.chrX                80845 18 + 21540570 I
e caeRem4.Crem_Contig24  333269 16 +  1162296 I

a score=1203.000000
s ce10.chrX             1253244 4 + 17718866 TTCA
s cb4.chrX                80863 4 + 21540570 TTAA
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig24  333285 4 +  1162296 TTAG
i caeRem4.Crem_Contig24 I 16 C 0
s caeSp111.Scaffold514   120332 4 -   141934 TTAA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      458577 90 -   783054 I
e caeJap4.Scaffold17966  101164 290 -   140921 I

a score=-375.000000
s ce10.chrX             1253248 3 + 17718866 CAA
s cb4.chrX                80867 3 + 21540570 CTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  333289 3 +  1162296 CAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120336 3 -   141934 AAC
i caeSp111.Scaffold514  C 0 I 11
s caeJap4.Scaffold17966  101454 3 -   140921 CAA
i caeJap4.Scaffold17966 I 290 C 0
e caePb3.Scfld02_62      458577 90 -   783054 I

a score=163189.000000
s ce10.chrX             1253251 168 + 17718866 ACCTCAACCCAACTCTATCGAAAAGATGCATAAATTCGATCCGGAAGTTATGATTGAAAAATGCATAGATCAGCGGATTCAAGCACGCCGAGCACATTGCCAAGCAGTGACAGATGCTGAACGTTGTAACGGAAAAACTGTTGACCAGCTCGAATGTGTTGAACTGAA
s cb4.chrX                80870 168 + 21540570 ACCTCAAACCAACTCTATCAAAAAGATGAATGAACTCAATCCGGAAATTATGGTTGAAAAATGCATAAATTAAAGGGTTCAAACAAGCAGAGCACATTGCCAGGCAATGGCAGATGCTGAATGTTGTAACTGAGAAACTGtttacaaattcgaatgtgttaaactgaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  333292 168 +  1162296 ACCTCAATCCAACTCTATCGAAGAGATGAATGAATTCTATTCTAAAATTATGGTTGAAAAATGCGTAGATCAATGGGTTCAGACACGCCGAGCACATTGCCAGACAGTGGCATATACTGAATGTGGTGACCGAGAAACTTTGCACCAATTCAAATGTGTTGAActaaa
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514   120350 168 -   141934 ACCTCAATCCAACTCTATcaaacaaatgaatgaattcgATTCTGAAGTTGTGATTGAAAAACGCGTAAATTAGTGGATTTAAGCACGCAGAACACATTGCTAAACAATGGCAAATGCTGAATGTTGTCACAGAAAAACTGTTGACTAGTTCAAAAGtgttgaactgaa
i caeSp111.Scaffold514  I 11 I 1
s caePb3.Scfld02_62      458667 168 -   783054 ACCTCAATCCAACTCTATCAAACAAATTGATGAACTCTATCCGGAAGTtatgattgaaaaatgcatAAATTAGCGGATTGAGACATGCCGAGACCATCGCCAAACAGTGGCAAATGCTGAACGTCGTCACTGAGAAGCTTTGGACAAATTCGAACGTGTTGAtctgaa
i caePb3.Scfld02_62     I 90 I 26
s caeJap4.Scaffold17966  101457 168 -   140921 ACCTCAGGCCGACTCGGTCGAAAAGATGCATGAACTCTATCCGGAAGTTGTGATTGAAAAATGCGTAAATCAATGGATTCAAACATGCTGAACACATTGCCAAACAGTGACAAACGCTGAATGTCGTCACGGAAAAGTTGTTGACCAACTCGAAAGTGTTAAACTGAA
i caeJap4.Scaffold17966 C 0 C 0

a score=910.000000
s ce10.chrX             1253419 1 + 17718866 A
s cb4.chrX                81039 1 + 21540570 a
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  333461 1 +  1162296 a
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514   120519 1 -   141934 a
i caeSp111.Scaffold514  I 1 C 0
s caeJap4.Scaffold17966  101625 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 279
e caePb3.Scfld02_62      458835 26 -   783054 I

a score=-6326.000000
s ce10.chrX             1253420 30 + 17718866 TTTGTTATGGTTTTAGTGGAACATAAAACG--
s cb4.chrX                81040 24 + 21540570 ttttctaagtaGTGATGATTATGT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  333462 32 +  1162296 aaggtcaaaagaTTATAATAATGTGGATGAAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120520 32 -   141934 ttagataCTAGCGAaagacatttttcagaaaa
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      458835 26 -   783054 I
e caeJap4.Scaffold17966  101626 279 -   140921 I

a score=-540.000000
s ce10.chrX             1253450 10 + 17718866 AAAATGCTCC
s cb4.chrX                81064 10 + 21540570 TTTATGAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  333494 10 +  1162296 TCTATAGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120552  6 -   141934 ----aaaact
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      458861 10 -   783054 AAAGTGAACT
i caePb3.Scfld02_62     I 26 C 0
e caeJap4.Scaffold17966  101626 279 -   140921 I

a score=91324.000000
s ce10.chrX             1253460 106 + 17718866 TACGATATGAAAAACGTTGAGTGGCAGCCAGGCGACGGCGAATACAGCTACAACGCATACAAGAAGGAGGTGGGTGCGTCGTTGACGTTCCACGACGGATCTGGAA
s cb4.chrX                81074 106 + 21540570 CACAATATGGAATACATTTAAAGGGAGCCAAGCTACAGCGAACACTGCAACGACGCAGACAAGGAGAAGATGAGTGCGGCGCTGTCGCTCTACTACTGATCTGCAA
i cb4.chrX              C 0 I 138
s caeRem4.Crem_Contig24  333504 106 +  1162296 TACGATATGGAAAACATTCAGTGGTAGCCAAGCAACTGCAAATACCGCAACGACGCATACAAGTAGGAGATGAGTCCGGCGTTGGCGTTCTACCAcggatctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120558 106 -   141934 aacaatATGAAATACATTCAATGGCAACCAGGCTACTGCAAATACAGCAACAACGCAAaccagaagaagatgagtgCGTCGTTGTCGTTCAACAAcagatctgaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      458871 106 -   783054 AACAAAATGGAACACATTCAATGGAAGCCAGGCAACTCCAAAAACTGCAACGACACAGACTAAGAGGAGGTGAGTGCGCCGTTGCCGTTCAACAaccgatctgaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  101905 106 -   140921 TACAATGTGAAAAACGTTCAAGGGTAGCCAAGCTACTGCAAAAACTGCAACTACACAAACGAGAAGAAGATGAGTTCGTCGTTGCCGTTCGAAAACTGACCTAAAA
i caeJap4.Scaffold17966 I 279 C 0

a score=897.000000
s ce10.chrX             1253566 10 + 17718866 ---Ctttttttaa
s caeRem4.Crem_Contig24  333610 10 +  1162296 ---tttattgtgA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   120664 10 -   141934 ---ttttctttga
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      458977 10 -   783054 ---attctattaa
i caePb3.Scfld02_62     C 0 I 33
s caeJap4.Scaffold17966  102011 13 -   140921 TTGACATTTGTAG
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                81180 138 + 21540570 I

a score=1818.000000
s ce10.chrX             1253576 4 + 17718866 aata
s caeRem4.Crem_Contig24  333620 4 +  1162296 AATA
i caeRem4.Crem_Contig24 C 0 I 21
s caeSp111.Scaffold514   120674 4 -   141934 aaca
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966  102024 4 -   140921 AATA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      458987 33 -   783054 I
e cb4.chrX                81180 138 + 21540570 I

a score=-155.000000
s ce10.chrX             1253580 1 + 17718866 a
s caeSp111.Scaffold514   120678 1 -   141934 t
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966  102028 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 20
e caePb3.Scfld02_62      458987 33 -   783054 I
e cb4.chrX                81180 138 + 21540570 I
e caeRem4.Crem_Contig24  333624 21 +  1162296 I

a score=310.000000
s ce10.chrX             1253581 7 + 17718866 ttttatt
s caeSp111.Scaffold514   120679 7 -   141934 TTGTGTT
i caeSp111.Scaffold514  C 0 I 12
e caePb3.Scfld02_62      458987 33 -   783054 I
e caeJap4.Scaffold17966  102029 20 -   140921 I
e cb4.chrX                81180 138 + 21540570 I
e caeRem4.Crem_Contig24  333624 21 +  1162296 I

a score=0.000000
s ce10.chrX             1253588 583 + 17718866  
e caePb3.Scfld02_62      458987  33 -   783054 I
e caeJap4.Scaffold17966  102029  20 -   140921 I
e cb4.chrX                81180 138 + 21540570 I
e caeSp111.Scaffold514   120686  12 -   141934 I
e caeRem4.Crem_Contig24  333624  21 +  1162296 I

a score=984.000000
s ce10.chrX             1254171 33 + 17718866 CATTTTTCGAAACAAAAACATTTCAAAAATTTC
s cb4.chrX                81318 33 + 21540570 CACatcttgaaattgaaaaaaattaaaaattct
i cb4.chrX              I 138 I 3
e caePb3.Scfld02_62      458987 33 -   783054 I
e caeJap4.Scaffold17966  102029 20 -   140921 I
e caeSp111.Scaffold514   120686 12 -   141934 I
e caeRem4.Crem_Contig24  333624 21 +  1162296 I

a score=137401.000000
s ce10.chrX             1254204 182 + 17718866 TTACCGTCTCCTCTGACTCGTATTGGTATTTGTTGTCA-CATTCTGATTTCGGTTTGCAAATCTCAGCTTCATCCGATGTGCTATCCGGGAGTAGGCGAAGACTAGTGAAAACAGGGGAAATGCGTATTGGGTGATAAGAACTGCCAACGTGTAGGTGCCTTTTGATATGATCATCTGGAA--AA
s cb4.chrX                81354 182 + 21540570 GTACCTTCTCCGTTGATTTGTATTGGTGGCAGTAGTCA-AGTTCTGGTTTCTATTTGCAAATCGCAACTTCATTCTGTATGCGATTCGAGAATACGCAAAAACCAATGAAAACAACGGGAATGCATACTGGGTAACAAGAACGGCGAGAGTATATGTGGCTTTTGATATGATCAtctggaa--aa
i cb4.chrX              I 3 I 35
s caeRem4.Crem_Contig24  333645 182 +  1162296 TTACCTTCGTCTTTGACTCGTGTTTGTGTTAGttgtca-cattttgattccTATTAGCGAATCTCAGTTTCATGCGATGTGCGATTCGAGAATAGGCAAAAACCAGTGAGAACAATGGGAACGCATACTGTGTAATGAGTACGGCCAGAGTATATGTGGCTCTTGATATGATCATctgaag--aa
i caeRem4.Crem_Contig24 I 21 I 26
s caeSp111.Scaffold514   120698 182 -   141934 TCACCTTCTCCGTTGGCTTGTATTTGTAGTTGATGTTA-CATTTTGGTTACGGTTTGCAAACCTTAATTTCATTCGGTGTGCAATCCGGGAATAAGCGAAAACCAAGGAGAATAATGGAAATGCATATTGAGTGATAAGAACGGCAAGAGTGTATGTGGCTTTGGATATAATCATCTGGAACG--
i caeSp111.Scaffold514  I 12 I 1
s caePb3.Scfld02_62      459020 180 -   783054 TTACCTCCTTCTTTGACTCGAATTGGTAGCCG-TGTTAGTATTTTGATTCCTGTTTGCAAATCTCAGTTTCATACGATGAGCAATCCGTGAGTAAGCAAAAACAAGCGAGAAGAGCGGAAACGCGTATTGGGTGATCAGAACGGCAAGTGTATACGTCCCTTTTGATAtaatcatctgaaa----
i caePb3.Scfld02_62     I 33 C 0
s caeJap4.Scaffold17966  102049 179 -   140921 TTACCTTCTTCGCAGGCTTGTATTTGTAGTAG---CTA-cgttctgattttttgccgaGAATCTCACTTTCATTCTGTGCGCAATTCGAGAATACGCGAAGACAAGCGAGAATAAAGGGAATGCGTACTGGGTGACGACTACGGATAAAGTGTAGGTGGCTTTTGATATGatcatctgaaa--aa
i caeJap4.Scaffold17966 I 20 C 0

a score=91.000000
s ce10.chrX             1254386 1 + 17718866 A
s caeJap4.Scaffold17966  102228 1 -   140921 a
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      459200 0 -   783054 C
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120880 1 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=-1401.000000
s ce10.chrX             1254387 18 + 17718866 TTGGAG---TTTAGCCGAAAT-
s caeSp111.Scaffold514   120881 21 -   141934 TCGAAGAGTTTTAATGGAAAT-
i caeSp111.Scaffold514  I 1 I 2
s caeJap4.Scaffold17966  102229  5 -   140921 -----------------aaagg
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      459200  0 -   783054 C
e cb4.chrX                81536 35 + 21540570 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=-412.000000
s ce10.chrX             1254405 27 + 17718866 TGTCTTTTTTTATATTTGTTTT--------------TATAT
s caePb3.Scfld02_62      459200  9 -   783054 ------------------tttt--------------catat
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  102234 41 -   140921 tgtttgTCTTTGGGGTTTTTCTGGTAGTGGAAGGAATAtat
i caeJap4.Scaffold17966 C 0 I 79
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120902  2 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=182.000000
s ce10.chrX             1254432 2 + 17718866 TT
s caePb3.Scfld02_62      459209 2 -   783054 tt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  102275 79 -   140921 I
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120902 2 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=0.000000
s ce10.chrX             1254434 103 + 17718866 CCATACATACTGGTTAATATAATACCAGTTAACATGTTTTCAGAAAACTGAAAACTTTAAAAAGTCATTTGAAATTTTATTTGAAAATTTTAAAAAATCGGAA
e caePb3.Scfld02_62      459211   0 -   783054 C
e caeJap4.Scaffold17966  102275  79 -   140921 I
e cb4.chrX                81536  35 + 21540570 I
e caeSp111.Scaffold514   120902   2 -   141934 I
e caeRem4.Crem_Contig24  333827  26 +  1162296 I

a score=563.000000
s ce10.chrX             1254537 22 + 17718866 CAATTTTTTTAAATTTTTTTTC
s caeJap4.Scaffold17966  102354 22 -   140921 ctatctctttctctttctcttt
i caeJap4.Scaffold17966 I 79 C 0
e caePb3.Scfld02_62      459211  0 -   783054 C
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120902  2 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=303.000000
s ce10.chrX             1254559 16 + 17718866 AACTCTTTTATGTATT
s caePb3.Scfld02_62      459211 10 -   783054 aacCCTTTTT------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  102376 16 -   140921 ctctctttttcgtgtc
i caeJap4.Scaffold17966 C 0 I 181
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120902  2 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=-3709.000000
s ce10.chrX             1254575 159 + 17718866 TGGAAATTATGACACATTTTCTATTACTCAAAGCAAATTTCCATAGAAAGTATTAAGCAAGTTCCCTTGACTATCGTCACACCATATTAACCTAATTATTACAGTAATACTACAGTACATAGACAGTTTTTATATTTCATTAATAGGAGCTGATACATG
s caePb3.Scfld02_62      459221  25 -   783054 -----------------------------------------------GAGTCCCCGGCAAGTTGCCT----------CACA-----------------------------------------------------------------------------A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  102392 181 -   140921 I
e cb4.chrX                81536  35 + 21540570 I
e caeSp111.Scaffold514   120902   2 -   141934 I
e caeRem4.Crem_Contig24  333827  26 +  1162296 I

a score=-1347.000000
s ce10.chrX             1254734 36 + 17718866 AAGCTTAT-TGTTTAGTTT--------ATAGTTCATTTAGACCAC
s caePb3.Scfld02_62      459246 28 -   783054 AAGCTTATGTGTTCAA-----------ATATTGCACTTA------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  102573 40 -   140921 aaacacaa-tgtatagtttttcaaaaaataaaacataaaaa----
i caeJap4.Scaffold17966 I 181 C 0
e cb4.chrX                81536 35 + 21540570 I
e caeSp111.Scaffold514   120902  2 -   141934 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=819.000000
s ce10.chrX             1254770 3 + 17718866 TAA
s caeSp111.Scaffold514   120904 3 -   141934 TAA
i caeSp111.Scaffold514  I 2 C 0
s caeJap4.Scaffold17966  102613 3 -   140921 taa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      459274 0 -   783054 C
e cb4.chrX                81536 35 + 21540570 I
e caeRem4.Crem_Contig24  333827 26 +  1162296 I

a score=443.000000
s ce10.chrX             1254773 5 + 17718866 GAACC
s caeRem4.Crem_Contig24  333853 5 +  1162296 GGACT
i caeRem4.Crem_Contig24 I 26 C 0
s caeSp111.Scaffold514   120907 5 -   141934 GTGTT
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold17966  102616 5 -   140921 aaact
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      459274 0 -   783054 C
e cb4.chrX                81536 35 + 21540570 I

a score=182255.000000
s ce10.chrX             1254778 208 + 17718866 AACCTTTTCCCATATCTCATTTTGCTCATGGCAAATGTAAAGAGCCAAATCGCACGATGGCTCAACGAAAACCGGTGTCAAATCAGAAGCCTGCAGAAGTGGAACCGCAAGGATTAGGGAAATCACCCAGATCATGATAAAAAAGCAGAACGACAGATTTTGTTGTCGTTCTCGCTTCGTTGGGAAGATAATGAGCACGTATCTGAAA-----------------------------
s cb4.chrX                81571 208 + 21540570 AAccttttcccaaatttcattttgttcaTGGCAAATGTACAAAGCAATATCACACGATGGTTCCACAAAAACAGATGTTAGATCGGATGCTTGGAGAAGAGGAACCGCTAATATGAGAGAGATGACCCAGATCattataaaaaaacaaaatgaaaggTTTTGTTGTCTTTCTCGCTTGGTAGGAAAAATGATAAGcacatatctgaaa-----------------------------
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig24  333858 208 +  1162296 TACCTTCTCCCAGATATCATTCTGTTCATGACAGATATAAAGAGCGAGATCACAAAGCGGCTCAACAAACACCGGTGTTAAATCAGATGCCTGGAGAAGAGGAACAGCCAATATAAGTGAGATGACCCAGATCAttatgaaaaaacagaaagaaaggTTTTGTTGTCGCTCTCGTTTAGTGGGGAAAATAATGAGCACATATCTGGAA-----------------------------
i caeRem4.Crem_Contig24 C 0 I 41
s caeSp111.Scaffold514   120912 208 -   141934 CACCTTTTCCCAAATGTCGTTTTGTTCATGACAGATATAAAGGGCAAGATCACACGAAGGTTCAACAAAAACAGGTGTCAAATCAGATGCTTGCAATAAAGGAACAGCCAATATAAGTGAAATAACCCAAATCAttataaaaaagcaaaacgaGAGGTTCTGTTGccgttctctttttgttggaaaaataattaggacgtatctgaaa-----------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      459274 206 -   783054 --CTTTCTCCCAAATATCATTTTGCTCATGACAAATGTATACAGCTATGTCACAAGAAGGTTCCACAAAAATCGGTGTCAAATCAGATGCTTGCAACAAAGGAACAGCCAATATCAGTGAGATAACCCAAATCATTatgaagaaacagaaagaaaggTTTTGCTGTCGCTCTCTTTTGGTCGGGAAAATGATTAGAacgtatctgaaa-----------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  102621 237 -   140921 tgccTTCTcccaaatttcattttgttcATGACAAATGTATAATGCTAAGTCACAAGTAGGTTCAACAAACACTGGGGTCAAATCCGACGCTTGCAAGAGTGGAACTGCTAACACAAGAGATGTAATCCAGatcataacaaaaaaacagaatgaAAGGTTCTGCTGTCGTTCTCTTTTGGTTGGGAATATAATGAGCACATATCTATAAAAGGGACTAGTGCATATGTATATCGCAAA
i caeJap4.Scaffold17966 C 0 C 0

a score=-10885.000000
s ce10.chrX             1254986 41 + 17718866 ACTTGTTAAATGGCattttta------------attaaaaaaaatatat-GTA-----C----
s cb4.chrX                81779 44 + 21540570 --------aat--catattcaAGGTCAACATTCACAACAGGTAATAGATGATA-----T----
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold514   121120 25 -   141934 ---------------------------------atgagggGAAATCGAA-ATACATGTT----
i caeSp111.Scaffold514  C 0 I 12
s caePb3.Scfld02_62      459480 20 -   783054 ---------------------------------aaatgaggaaatttaT-CCA-----T----
i caePb3.Scfld02_62     C 0 I 15
s caeJap4.Scaffold17966  102858 45 -   140921 CTTTAATGGATTGGattatca------------aaaaaagaaaaccaca-ata-----acaac
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  334066 41 +  1162296 I

a score=137131.000000
s ce10.chrX             1255027 155 + 17718866 ----------------ATACCTATCAACAGCAATTGAGGCTATCGAGAATGTGGATAAAAATATGTTAAAGCCTTGCAGCGAACCCGCAATTTTGCATAATGTCCTGCTAAATGGCCAGAACATGTAGAGAACCGTGTATAATGTGGTCGGCGCTGTCACAATACAAACCT
s cb4.chrX                81842 155 + 21540570 ----------------AAACCTATCCACCGCAATTGAAGCAATGGAGAATGTTGAAAGGAAAATGTTGAACCCTTGTAGCGAACCAGCGATTTTACATAACGTCCTACTAAATGGCCAAAACATATAAAGAACTGTATACAACGTGGTAGGAGCGGTGACAATGCAAACCT
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24  334107 155 +  1162296 ----------------ATACCTATCCACAGCAATTGAAGctattgaaaatgttgagagaAACACATTGAACCCTTGGAGTGAACCGGCAATTTTGCACAGTGTTCGGCTAAACGGCCAGAACATGTATAATACGGTGTACAACGTGGTTGGAGCCGTTACAATGCAGAcct
i caeRem4.Crem_Contig24 I 41 C 0
s caeSp111.Scaffold514   121157 155 -   141934 ----------------CTACCTATCAACTGCAATAGAAGctattgaaaaagtggatAGAAAAACGTTAAAGCCTTGCAGTGAGCCGGCTATCTTGCACAATGTTCTGCTGAACGGCCAGAACATATACAAAACGGTGTATAATGTTGTTGGAGCGGTAACTATGCAAACCT
i caeSp111.Scaffold514  I 12 C 0
s caePb3.Scfld02_62      459515 155 -   783054 ----------------TCACCTATCAACGGCTATTGAAGCTATTGAAAAAGTAGATAAGAAAACGTTGAAGCCTTGGAGGGATCCTGCTATTTTGCATAATGTCCTGCTGAACGGCCAGAACATATACAAGACGGTGTATAGCGTTATGGGTGCCGTCACAATACAAACCT
i caePb3.Scfld02_62     I 15 C 0
s caeJap4.Scaffold17966  102903 171 -   140921 aacaaaaaatgataGATTACCTGTCTACAGCAATCGAAGCAATCGAAAACGTGGatagaaaaatgttgaatccTTGCAATGAGCCAGCAATTTTGCACAATGTTCGACTGAAAGGCCAGAACATATACAGCACCGTGTATAACGTGGTAGGTGCTGTGACAATACATACCT
i caeJap4.Scaffold17966 C 0 I 28

a score=-16413.000000
s ce10.chrX             1255182 40 + 17718866 ------------------------------GGAATTTTTCAAATTGTT-----TCCTATCTTCA---------ATAATTCCAGC
s cb4.chrX                81997 38 + 21540570 ------------------------------GTGA------CAAGTTTC-----AGGTATTATTG-CACAAAGTCAGACTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  334262 34 +  1162296 ------------------------------ataa------aatttttt-----tggtttaattGTCACTG---CAGGC------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   121312 70 -   141934 AAAAACCAAGTTTTTGAGGATCAGATAATGGTGAGtct--aaattttctaaaaaggTAATGTTG---------AAGATTCC---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      459670 36 -   783054 GAGTTATAAGTc------------------atga------aaactttc--------gaatgtta---------gaaa-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  103074 28 -   140921 I

a score=163364.000000
s ce10.chrX             1255222 400 + 17718866  
s cb4.chrX                82035 344 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  334296 345 +  1162296  
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514   121382 443 -   141934  
i caeSp111.Scaffold514  C 0 I 7809
s caePb3.Scfld02_62      459706 361 -   783054  
i caePb3.Scfld02_62     C 0 I 8
s caeJap4.Scaffold17966  103102 611 -   140921  
i caeJap4.Scaffold17966 I 28 C 0

a score=-748.000000
s ce10.chrX             1255622 5 + 17718866 --CTGAA
s cb4.chrX                82380 5 + 21540570 --ctgaa
i cb4.chrX              I 1 I 377
s caeRem4.Crem_Contig24  334642 5 +  1162296 --TCCAA
i caeRem4.Crem_Contig24 I 1 I 1
s caePb3.Scfld02_62      460075 5 -   783054 --ctgaa
i caePb3.Scfld02_62     I 8 C 0
s caeJap4.Scaffold17966  103713 5 -   140921 TAGTG--
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=-10260.000000
s ce10.chrX             1255627 107 + 17718866 AATACCGAC----GAAAATACAAAAATACGGGAGATGAAAT--------------TGAAGGCAAGAAAAAA--------AATATGTGAAACGCCAATTTTCTCACACAGAAGGGA-AATAAAT--------------AAACGAATATT
s caeRem4.Crem_Contig24  334648 113 +  1162296 AATTCTGAAATGGGAAGTTATATGATTATGGTAG--GAGGTTCTCAAGTCACGAGTAAAGAGCGGAGATaattgaaatcaaatcaaga-------------------aaataagataatAAGT--------------GGGAAAAGTTT
i caeRem4.Crem_Contig24 I 1 C 0
s caePb3.Scfld02_62      460080 106 -   783054 -agttcaatATAGTAAATCACATCGTAGTTcaaa--gaagt--------------gaaagaaaggaaataa--------aaaataaga-----------------gtAAACGCGACCGTAATTTCTACTTCCCTGACGAGCCAAGATT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  103718 106 -   140921 -----------AATATGATCTGCAATAATGTGAA--GAATT-------TTAAGGGTTGAGGTgggaaaaagcataaat-taattaaaa-------gttttgaaaaattaaaaaaaaaaaaaag--------------aagcaaacaTT
i caeJap4.Scaffold17966 C 0 I 145
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=-4096.000000
s ce10.chrX             1255734 125 + 17718866 CCAAGAAA--TTGAGCATCCAGA-------------CTAGTGGTTAGTCGGTCGGTTATAAG-------A-----GAAAAATATCAAAAAATGAGAGGTAATTACTGCGAATTATAGAGAAGAAATGAAAATTGAAAAGTGA----AAACTATCAT---
s caeRem4.Crem_Contig24  334761 135 +  1162296 Ctgggaaatttcaattttttaga--------gTAGATTTGTGGGCGTGTGAAAGGTAGAGAATGGAGTCActtgcaaaatgtttttacagtgg-------------tcaaaatttaaaaatggtATTTTAAAAATAAGCGATACCGAAATTACCAT---
i caeRem4.Crem_Contig24 C 0 I 71
s caePb3.Scfld02_62      460186 148 -   783054 CTGAGAAG--GCCAgttaaaagaaagaaaatgaagagttgtggctagttaagagaagaagaa-------aaatatgaaaaataccAACAGGAGAGGggtaatta-ttgaaatttcagatatgagatgaaaaagagaaaataaatt-agatAACTATCTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=-988.000000
s ce10.chrX             1255859 40 + 17718866 CTCATTTAACTCATTCTCCCGCCCCGGTGTCTACTCCCAT
s caePb3.Scfld02_62      460334 12 -   783054 CT--TTTAATT--------------------------TCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  334896 71 +  1162296 I

a score=-14327.000000
s ce10.chrX             1255899 234 + 17718866 ATCCCTTTTA---AATTGAAACTTTATAAAAACAATAACGTTGAAAGACAGGGGTTTGGGAGCAATATGTGCACCGAATTTCAGGAAT---AACTTAGtttttttttttaataatattttttcaattttaCCAGCCACAATCATCTATGTTATGCTGCCTA-AAAATACAC--AACTTGCACTGA-------------------------------CAAGATGTTTAG-------------TTGCACTGACCAAAACTTCGAA----------TGACTTTATCCAATGG------------------CTATCATA----------------
s caeRem4.Crem_Contig24  334967 243 +  1162296 attttttttacaatgacaaatttttacaatgacaaaatcgGGGATA--------CTGGGCAACCTGGTTTGTAAAGTTTCTCAAGGAAAGGAA-------------TGTGCAAAAAATGT----AGACTAGGAACTAGTACCCCTT--------------ATAGAGTAAAA--AATCT--ACTATCGTGAACGTTTGGTATTC-------------AAAGAACAACCG---------AGCCTAGTAGTTAGCTAGACCTATAACGAAGAATGGTGTCtacttcgagaaa-------aaatgaaaagactAACATA----------------
i caeRem4.Crem_Contig24 I 71 I 185
s caePb3.Scfld02_62      460346 285 -   783054 ATCTCTTTTG--------------------AACAAAAGTGTGG-------------GGGCAACTTTATGTCTAGgag---tcaaaaattggaaatgttttCCGGCTCTTGctaatgtttc----tttttgtgagTTATGACCCTTTCAGCTTTAATGGCCATAGGTTACAATCAACCTG-ACCAATGTCAAAATAGGATTGTCTTTGCTAAACTAGCAAGATGAACGGTACTTTCTCAGCTCTGCGCTTCTCAATACCTGtaa-----aatctgaacttttttgggtAACTCACAGAAGTAGACGAATAATCAGATTCGTTGAGGTTTCTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=0.000000
s ce10.chrX             1256133 79 + 17718866 TATGCCAATTGCACTGACAAAATTT----------TCAGTTGCACTGACCACTATATCATTTGCACTGACAAAAA--TTTTGATTGACTTT
s caePb3.Scfld02_62      460631 85 -   783054 GACAAGAACTCGTCCATCAAAAATTAAGGTTAGGATCATTAATACTGA--ATGATGtccttt----tgagaaaaatcttcTAGCCAACTTT
i caePb3.Scfld02_62     C 0 I 102
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  335210 185 +  1162296 I

a score=0.000000
s ce10.chrX             1256212 70 + 17718866 ATCAGTTGCACTGACCACATCTCCATTGCAATGACCATAATTTTTGGTTTACTGTTAAGAATTGCACCAA
e caePb3.Scfld02_62      460716 102 -   783054 I
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  335210 185 +  1162296 I

a score=111.000000
s ce10.chrX             1256282 44 + 17718866 ATTCGAAAGAATCTCGCAAACAGTCAAAAGC--------------TATAGGAAATAGC
s caeRem4.Crem_Contig24  335395 54 +  1162296 ATGCGAAATAA----GAAGATAGGGAAAAGCGGAGCAAGGGAGATGATGgtgaacaga
i caeRem4.Crem_Contig24 I 185 C 0
e caePb3.Scfld02_62      460716 102 -   783054 I
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=234.000000
s ce10.chrX             1256326 32 + 17718866 AAAAATTAA------TAAATGTGTGGGAGCAGTTCATG
s caeRem4.Crem_Contig24  335449 29 +  1162296 aaaatttta------aaattg---gagGGAGCTTCAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      460818 34 -   783054 -aaatttcagaaaatgaattg---gGGAGGATTGGTTG
i caePb3.Scfld02_62     I 102 C 0
e caeJap4.Scaffold17966  103824 145 -   140921 I
e cb4.chrX                82385 377 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=-2831.000000
s ce10.chrX             1256358 47 + 17718866 AAAAATAATTTTGAAAAAACAAAAGAAGCGGTGAATGAGCTCACCAG
s cb4.chrX                82762 38 + 21540570 AAagatgaaagtgaaaaaat-----tggtagTGGATGAGAG----AC
i cb4.chrX              I 377 C 0
s caeRem4.Crem_Contig24  335478 35 +  1162296 -ataaaaaaaatgaggaag-------agtGGTGAATAAGAG----GA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      460852 20 -   783054 ----AAtaagaggagaaaa-------------------gaa----ga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  103824 145 -   140921 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=48430.000000
s ce10.chrX             1256405 107 + 17718866 AGACAACCAAATACGATTAAACC-AAACTAGTAG--CATCACCACAAGAATAAAAAATTTATATGACTTTGTTTTGACGGAACT--------CGTCTTTTCAACCGCCATTTATTTCG---
s cb4.chrX                82800 101 + 21540570 GGAGAACGAAATACGATTGAGCCAAAACTAGCAA---------acaagaaatgaaaatttctatGACTTTGTTTTGACGGAATTCC-----TCTCTTTTCCAACTGCCACTTATT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  335513 105 +  1162296 AGAGAACCAAATACGATTGAGCC-AAACTAGAGG--CATCACcacaagaaataaaaatttctatGACTTTGTTTTGAcggaattc-------ctttttttcaactgccaCCTATT------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      460872 114 -   783054 gaaggaccAAATACGATTGAGCCAAAACTAGGAGG-CATCACcacaagaaataaaaatttctatgACTTTGTTTTGACGGAATttcttcgttcttcttttcaacTGCCACCTATT------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  103969 102 -   140921 AGAGAGCCAAATACGATTGAGCC-TAACTACTCGACCATCAC-ACAAGAAAT-AAAATTTCTATGACTTTGTTTTGGCAGAATTG-------------TTCCACTTCTATCTTTT---TTG
i caeJap4.Scaffold17966 I 145 I 2110
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=4850.000000
s ce10.chrX             1256512 67 + 17718866 GCCACCCAGGTCGGTTT-------TTTTAAACATTTCTCTCTGCCATCTTGTGGTGGATAT---CCATAAACATCGG
s cb4.chrX                82901 60 + 21540570 -TTATCTCATCCCTTTTCTCCCTAAGATGCCCA---TTTT------TCTTG----GGATAT---CCATAAACATGGG
i cb4.chrX              C 0 I 4378
s caeRem4.Crem_Contig24  335618 61 +  1162296 -CCCCTCCGTTCTTCTTCGTTCT-AGATGAGCAtt-tttt------tCTTG----GGATAT---CCATAAACATGGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      460986 55 -   783054 -CCATCCCGTTCC-----------AATAGAGCGTTCTTCT------TCTTG----GGATCTATCCCATAAACATTGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=3826.000000
s ce10.chrX             1256579 69 + 17718866 -----------AAATGCAGGA------------ACGGGCCGGATATGAAATGGAGAAGTGAAACACAACAACAACATCAACAAAAGAAAACT---
s caeRem4.Crem_Contig24  335679 77 +  1162296 --GCCTGGTTTCAATGCTGGA------------AGAGGATGAgcggaaaatgaa-gaatgaaacaaaaacagaataacaTCTGgaaagaatt---
i caeRem4.Crem_Contig24 C 0 I 954
s caePb3.Scfld02_62      461041 95 -   783054 ACGCCTAGTTTCAAtgctggaaaaactggaaataaagaaaaagaaaaaaatgaatgaatgaaacaaaaacagaataacatctcgagaaaaaaaac
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=556.000000
s ce10.chrX             1256648 100 + 17718866 GGTATCAGAAAACAGAACTTTGTGTGTTTTTAAAGGT-----GGAGTTCCAAAATCTGAGACCTTGAGACTTTCCATTTTTCAGACCAAAAATTTTCGAAAATTT
s caePb3.Scfld02_62      461136  90 -   783054 ggaatttctaa----aattcttggtgttttcaagaattgaaagGTATATTAGAATC--AGGACTCGgaacctttttttgtt---------gtttctcgAAAGTTT
i caePb3.Scfld02_62     C 0 I 4643
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  335756 954 +  1162296 I

a score=0.000000
s ce10.chrX             1256748 2073 + 17718866  
e caePb3.Scfld02_62      461226 4643 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  335756  954 +  1162296 I

a score=4094.000000
s ce10.chrX             1258821 205 + 17718866 TTTTCAGTCAAAAAAAAAAGTGAGAAAGAGGAGGCTGGTG--GCATAATTGAAAAACCAGCGGTCGAGAGAATCAATGAGAAGGAAATAAAGGGAATTTGGAGTGAGCAAAACACGTAGGAGTTAATGAGAAGAATGAGAATGGCAAGAAGATTTGAGTGCGTGTGT-GTTGATATAGTTTGGT-GGACAAAAATGGAATACAAAGTAC
s caeRem4.Crem_Contig24  336710 162 +  1162296 tttttggtcGAAAGGAGGAGTGGG---------TCTGGTGTGGCATAATTGAAAAACCAGCGAC-----GAATCAACGAGAA------AAGGAGAAT---------GAAAAACACGTAGGAGT-----------------AGGGCATGAAGATCTCAGTGCATTCATAGATAATGTCATTGAACAGGACGAATATAG-ATAGAAAggac
i caeRem4.Crem_Contig24 I 954 I 5189
e caePb3.Scfld02_62      461226 4643 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=0.000000
s ce10.chrX             1259026 6452 + 17718866  
e caePb3.Scfld02_62      461226 4643 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  336872 5189 +  1162296 I

a score=6907.000000
s ce10.chrX             1265478 475 + 17718866  
s caePb3.Scfld02_62      465869 447 -   783054  
i caePb3.Scfld02_62     I 4643 I 2875
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  336872 5189 +  1162296 I

a score=0.000000
s ce10.chrX             1265953 1645 + 17718866  
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  336872 5189 +  1162296 I

a score=3214.000000
s ce10.chrX             1267598 83 + 17718866 CAACAAAAAGTGACGACAAAGTTGTTTTTTTTTTCGAATAATAAAAATTCCAAGTCCAACATCTTAACGAACTACTGATTGGG
s caeRem4.Crem_Contig24  342061 78 +  1162296 cagaaaaaagtttcagaaaaaagctcctcttttttgaa-----aaaaattcaagctCAACATCTTAACAAACCTCTGATTGGG
i caeRem4.Crem_Contig24 I 5189 I 1344
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=0.000000
s ce10.chrX             1267681 2071 + 17718866  
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                82961 4378 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  342139 1344 +  1162296 I

a score=69.000000
s ce10.chrX             1269752 2 + 17718866 GT
s cb4.chrX                87339 2 + 21540570 gc
i cb4.chrX              I 4378 C 0
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  342139 1344 +  1162296 I

a score=9465.000000
s ce10.chrX             1269754 74 + 17718866 TGCTCATTATTGCCCAATTACGGGTGTCATTTGTAAACGAAGCCAATCTCAAAAAGTACGTGGTTGTTCAGGAA-
s cb4.chrX                87341 73 + 21540570 tCCTCATTATCAACCAATTAGAGGT-TCATTTGTAAACGAAGCTAATTTCAAGAAGTGCGCTGCTTtcc-cagaa
i cb4.chrX              C 0 I 760
s caeRem4.Crem_Contig24  343483 73 +  1162296 TACTCGTTATCAGCCACTTAGAGCT-TCATTTGCAAACGAAGTCAATTATGAAAAGTACGTGGTTTTTCACAGA-
i caeRem4.Crem_Contig24 I 1344 C 0
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=140.000000
s ce10.chrX             1269828 11 + 17718866 TACCCGGCAAA
s caeRem4.Crem_Contig24  343556 11 +  1162296 AATGCGTTAAA
i caeRem4.Crem_Contig24 C 0 I 1339
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=0.000000
s ce10.chrX             1269839 772 + 17718866  
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I
e caeRem4.Crem_Contig24  343567 1339 +  1162296 I

a score=585.000000
s ce10.chrX             1270611 25 + 17718866 TCCCAAAGTTTTCAAAAACATCCAC
s caeRem4.Crem_Contig24  344906 22 +  1162296 TCCCAATGTTTCCCAAA---CCTCC
i caeRem4.Crem_Contig24 I 1339 C 0
e caePb3.Scfld02_62      466316 2875 -   783054 I
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=300.000000
s ce10.chrX             1270636 1 + 17718866 G
s caeRem4.Crem_Contig24  344928 1 +  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      469191 1 -   783054 G
i caePb3.Scfld02_62     I 2875 C 0
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   121825 7809 -   141934 I

a score=9378.000000
s ce10.chrX             1270637 888 + 17718866  
s caeRem4.Crem_Contig24  344929 699 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   129634 615 -   141934  
i caeSp111.Scaffold514  I 7809 C 0
s caePb3.Scfld02_62      469192 648 -   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  104071 2110 -   140921 I
e cb4.chrX                87414 760 + 21540570 I

a score=46051.000000
s ce10.chrX             1271525 171 + 17718866 CTCAACTGCTACCAATGCAATGGATGGCATGGGGATTATCCGTTGCGGTAAATTATTTTTCGTTGCATTTTTT-TTTGAAAAAATTAGTAAAATTATAGTTCTCAAAAATTTCAGATACTCAACTGCTGCCACCTGTGACAACAGGAATGATCAATGTCAAACTACTCAGGT
s caeRem4.Crem_Contig24  345628 145 +  1162296 CTCAACTGCTATCAATGTAATGGATGGCACGGGGACTATCCGTTGAGGTAAGATG--------Agcaac------agaaaacaaaatatcaagctat--ttc-----------agatattcaacTGCCGCCACCTGCGATAACCGGAACAATCAATGCCAGACTACTCAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   130249 104 -   141934 CTCAAGTGCTACCAGTGCAATGGATGGCACGGGGATTATCCTTTG--------------------------------------------------------------------AGATATTCCACAGCAGCTACTTGTGACAACAGAAACAATCAGTGTGAAACAACTCAAGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      469840 153 -   783054 CTCAAGTGCTATCAATGCAATGGCTGGCACGGAGATTATCCATTGAGGTATGAT----------GCCACCAGT-TAGGACGTCCgttaccaaatttt--tttttaa------tagataCTCCACGGCCGCCACTTGCGATAATCGAAACAATCAATGTGAAACTACTCAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  106181 155 -   140921 CTGAAATGCTATCAATGTAATGACTGGCACGGTGACTTTCCTTTAAGGT---------------TCATACATTGTAGATCACTTTTTTCCAAACACC--CCTTTAATGTTTTCAGATATTCCACCGCAGCCACTTGCGACAATCGGAATAACCAATGCGAAACCACACAAGT
i caeJap4.Scaffold17966 I 2110 I 44
e cb4.chrX                87414 760 + 21540570 I

a score=-2153.000000
s ce10.chrX             1271696  5 + 17718866 TTGTA-------------------------
s caeRem4.Crem_Contig24  345773 30 +  1162296 TTGTGATGGAATCATTATCAAAGATATGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   130353  5 -   141934 TAGTA-------------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      469993  5 -   783054 CTGTG-------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106336 44 -   140921 I
e cb4.chrX                87414 760 + 21540570 I

a score=-20116.000000
s ce10.chrX             1271701 145 + 17718866 GATTTTTTGTTTTTGC------GTTATTTTTAAAT-----------------------------------------------------------------------------------------------------GTGTCACTATGTGGCGACGTAATGTAATTTTTTTGTCAGTGCACTCATCATTTTGGTCAGTGC----ATGACCAAGTTTTTGTCAGTGCATGACCAAGTCTTTGTCAGTGCATGACCAAC----------------------------------------
s caeRem4.Crem_Contig24  345803 287 +  1162296 AAGTTGTTG--CTTACCAGAAATTTATTCCCTAGTGGACAGAAATCAAAGAGCCTTTTTGAGCATGTGAATGTGGTTCTCAGATTTATTCAAGTACCTCTTCAGAATAGGCTACTACGAATGTTTGGTGTATTTCAGTGTTACCACGTCAGGTTGTATTCAGGaatgtgcggaacggaaatcagaaattccgaaattgcCGATATTGCCGACTTTTCTCGA-------AACTCTTCTCcgtcggaaaatttccgagtTCCAATATTTTCGTAAATATAAATcggaaaagtttcaat
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      469998  16 -   783054 -------------TAC----------TTTcctagt--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tttc---
i caePb3.Scfld02_62     C 0 I 1
e caeJap4.Scaffold17966  106336  44 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130358   0 -   141934 C

a score=-22437.000000
s ce10.chrX             1271846 118 + 17718866 ---------TTTTGTCA------GTGCAGGATTTTTATTGGTT--TTTATTGTAATTTTTTGTGATATAACTTGCCACATAATCCGCTCCAAAATTTAAAAAAAC------------------------------------------------TAAGCAAAATTCAAAAACAAAA-------------TAATAAAT
s caeRem4.Crem_Contig24  346090 193 +  1162296 ttccgaaatttccaaaacttttagTTCCGCACATCT-CTGGTTGTATTATTCAAGATGTGTGGGATAGCATATGCCGAGTAA--CAAGtctgtttttatgaaaaaaatggaacaaattACTGGCAGTGAAAATTTGTTCCTAGCTCACATCAGttagcaaaatttgaaaatgtataaaaacaCTCCTGCATTATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   130358  32 -   141934 ---------TTCCAGca----------------------------attattca-----------------------------------------tttat--------------------------------------------------------------------------------------ttgcATTGTCT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470015  20 -   783054 ---------ttttaaaa----------------------------gATA-------------------------------------------------------------------------------------------------------------------------------------------CATTGTTT
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17966  106336  44 -   140921 I
e cb4.chrX                87414 760 + 21540570 I

a score=109405.000000
s ce10.chrX             1271964 171 + 17718866 TTCAGTACTGCGTGAAAATCATCGACCCAATGTCTCCCGGAGTGAACTACGTGACCTTCAAATCCGACTGCTTCTACCAAACTCAAATCCAAGTGAACCCGACAAACTTGAGTTATATCCAAGGAAAAACGTGCTTCCCATATCAAGATGGATCGGCTCCAGTCAAAAGGT
s caeRem4.Crem_Contig24  346283 171 +  1162296 TTTAGTACTGCGTGAAAATCATAGACCCAATGGCTCCCGGAGTCAATTATGTGACCTTCAAGTCCGACTGCTTCTACCAAACACAAATCCAGGTCAACCCCACCAACTTGAGTTACATCCAAGGAAAAACTTGTTTCCCGTATCAAGACGGATCGGCTCCTGTCAAACGGT
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514   130390 171 -   141934 TGCAGTACTGCGTGAAAATCATCGATCCAATGTCTCCCGGTGTTAATTATGTCACGTATAAATCAGATTGCTTTTATCAGACACAGATTCAAGTAAACCCAACAAACTTGAGCTACATTCAGGGGAAAACTTGTTTCCCTTACCAGGATGGGTCGGCTCCAGTCAAAAGGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470035 168 -   783054 ---AGTACTGCGTAAAAATCATCGATCCAATGTCTCCCGCAGTAAACTATGTTACATACAAAGCCGATTGTTTCTATCAAACTCAAATTCAAGTTAACCCAACCAATCTAAGTTACATTCAAGGAAAGACATGTTTCCCTTATCAGGATGGCTCTGCTCCGGTCAAACGGT
i caePb3.Scfld02_62     C 0 I 35
s caeJap4.Scaffold17966  106380 171 -   140921 TTAAGTACTGTGTCAAAATAATTGACCCAATGTCCCCTGGAGTTAACTACGTCACTTACAAAAGCGATTGTTTCTATCAAACTCAAATTCAAGTAAATCCCACTAATTTGAGCTATGTTCAAGGGAAAACATGTTTCCCTTATCAAGACGGATCAGCGCCAGTTAAAAGGT
i caeJap4.Scaffold17966 I 44 C 0
e cb4.chrX                87414 760 + 21540570 I

a score=-396.000000
s ce10.chrX             1272135 4 + 17718866 GGGT
s caeRem4.Crem_Contig24  346455 3 +  1162296 AGA-
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514   130561 4 -   141934 GGGT
i caeSp111.Scaffold514  C 0 I 35
s caeJap4.Scaffold17966  106551 4 -   140921 GAGT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      470203 35 -   783054 I
e cb4.chrX                87414 760 + 21540570 I

a score=-1105.000000
s ce10.chrX             1272139 11 + 17718866 -ATTTGATTTTT
s caeRem4.Crem_Contig24  346458  7 +  1162296 -ATAGGAT----
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966  106555 11 -   140921 TTTATGTTTCT-
i caeJap4.Scaffold17966 C 0 I 40
e caePb3.Scfld02_62      470203 35 -   783054 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130565 35 -   141934 I

a score=-1796.000000
s ce10.chrX             1272150 104 + 17718866 GTGTTGTTCAGCCAGCTTGCTGCCGCCCAGTTTTAGGCCGCTGTAGGCCAAGCTGCAGGAATACATGTCAATTTGATTTTGAAAAACTTTGGCTTCATAATTTT
s caeRem4.Crem_Contig24  346465  25 +  1162296 --------------------------------------------------------ATGAATGGATACCAA-----------------------TAATAGTGTT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      470203  35 -   783054 I
e caeJap4.Scaffold17966  106566  40 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130565  35 -   141934 I

a score=0.000000
s ce10.chrX             1272254 134 + 17718866 CTTCCAAATTTTGTAGTTCAATTTTCTGCATTCTCCTATTTCAAAAACTCCCACTTCAAGTAAAGTATGTTTTAGTCTGAAGTCAAAATCAAAATAACTATAAAGCTTAGTTAGTAAGCAGGCATGTAAACCTA
e caePb3.Scfld02_62      470203  35 -   783054 I
e caeJap4.Scaffold17966  106566  40 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130565  35 -   141934 I
e caeRem4.Crem_Contig24  346490   0 +  1162296 C

a score=-429.000000
s ce10.chrX             1272388 26 + 17718866 CATGGCTGCCTACCAATCCTCTCACT
s caeRem4.Crem_Contig24  346490  8 +  1162296 CATGGTTA------------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      470203 35 -   783054 I
e caeJap4.Scaffold17966  106566 40 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130565 35 -   141934 I

a score=0.000000
s ce10.chrX             1272414 1 + 17718866 A
e caePb3.Scfld02_62      470203 35 -   783054 I
e caeJap4.Scaffold17966  106566 40 -   140921 I
e cb4.chrX                87414 760 + 21540570 I
e caeSp111.Scaffold514   130565 35 -   141934 I
e caeRem4.Crem_Contig24  346498 0 +  1162296 C

a score=35259.000000
s ce10.chrX             1272415 50 + 17718866 TTCAGATGGTACTACTGCTTCTGCAACGACCGTGATTATTGCAACACTGC
s caeRem4.Crem_Contig24  346498 48 +  1162296 --TAGGTGGTACTACTGCTTCTGTAATGATCGTGATTACTGTAACTCTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   130600 50 -   141934 ttcagatggtACTACTGTTTCTGCAACGATCGAGATTATTGTAATAATGC
i caeSp111.Scaffold514  I 35 C 0
s caePb3.Scfld02_62      470238 50 -   783054 TTCAGATGGTACTACTGTTTCTGCAATGATCGTGATTACTGCAACACTGC
i caePb3.Scfld02_62     I 35 C 0
s caeJap4.Scaffold17966  106606 50 -   140921 ttcagatgGTATTATTGTTTCTGCAACGACCGGGACTATTGTAATTCTGC
i caeJap4.Scaffold17966 I 40 T 21847
e cb4.chrX                87414 760 + 21540570 I

a score=-21788.000000
s ce10.chrX             1272465 293 + 17718866 AAATGGATTTGGAATCGGGATTG---TACTTGTTTCTCTAATATCTCAATATTTGCTCTAATAAATAGATTCA--------------------ATAAAATTAA-------------ACTTCACACTATTAGAGTA-------------------CTTTGAACTTTTGA----------TTGAAAA---AAAACTGGGTAAAAAATCAC-------TATACTGATAGT---TATCAG-------------------------------------TAATTTTTT---------------------CAACACTTCCCACAGTCCAACTCAATTTTCGTACAGCAGCTGATTGACATTTGTCAGGAAAAGGTAATAAATTGCGAAAGACGCTGAAAGT--C-----GCGGAGAACATCTGACAATCAGTGGACTCTCAGT
s caeRem4.Crem_Contig24  346546 343 +  1162296 AAATGGACTCGGAATCTTCACTGCTCTAATATTATC---AGT-TATTTATTCTTGCTGGATTCAATAAA--TA--------------------GACAAattattatactcattttcagttggtatcatttcagaa------------------------atatataaAAAGGTAG---GACAAGATGAAAGAGTTGTTCAGAAAACTCACAGTGCTCCACTCTCATTCAGAATCAa-------catttcatttgtttcaattttcttttc---aagttttttttctttactgCATTGTACC----AACCCTatcaaaaacctaaa-aaccTTTGTACCTCTGA-AATTGACacctgtc---aaaaatgaagcagtTGTGAAATATATTGTGCAC--CA----ATGTGGAACATATGACAGT---------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   130650 212 -   141934 AAATGGATTTGGAATATTTATTGCTATGATAATATCTCAACTGTATATATTCTTTGccgaataaaaaaa--ca--------------------ataaagtaaa---------------------------------------------------------------------------ttcaaaa----------attgaggaATAAA---------------CATC---AATGAA-----------------------------------AGAAATCTATT---------------------ATAAATTTTGCACATGCATAAT-------------------AATTG--ACATGTC---GAAAATTGTGCGGTTACG----ACACGAGACACGTCATATAAATTTGAACATCTGACAGT---------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470288 405 -   783054 TGGAAGAACCGGATTATTCATTGCTCTGCTGATACATCAAGTGTATCTATTTTTCTCCtgataaataaa--aatatatattattGAAGCACggatgaaataaataaatt--tttttagacaaaatatttttagtaGCCGTGCGGAAAATTTATTCTTTGAGGTCCTGAcagttggtttttcaaaacggcACAAGTACTGAGAAATTTAGTCATTTTTCAGCCTcgtc---aacaaattttttgcaaaaaaagtgtaTAGATTCACAAGTCTAAAAGTCTTTTTCCAC--ATAAAATGTTCCACAAAAATTTTGCATATACTGAAC-AAAGTTTATATTTTAACAAATTGACACATGTC---AACAATTGGACAATTGTGAAATACATGAAACACATCAC---AACGGGAACATCTGACAGT---------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                87414 760 + 21540570 I

a score=31159.000000
s ce10.chrX             1272758 160 + 17718866 CACAAGTGGCGCCATTTGATAAGAGAACATATCAACG--CAACCTCGGAAGAAGAAGGGCAGT-------GTGCCTTT-ATTTGGACAACGCTCTGT-----------GCACAAATCAATGAGTCAAAATACAGAGTCGCAGATGTTGGTGGCGTTGCCTGCCGATTATATTCCAGTGAGT
s cb4.chrX                88174 168 + 21540570 CATAAGTGGCGCGA-TAGATAAGAAACC--ATGA-CG--TTATCACTGGTTCAAATCAACAGA-------ATTATTTGGGTCTGTTTGGCATTCTATCTCGTTCactagaaaaaatcaatgagtCAAAATACTGAGTCCCATGTGTTGGTCGAGCTGCCATCCAACTACATTCCGGTAAGT
i cb4.chrX              I 760 C 0
s caeRem4.Crem_Contig24  346889 165 +  1162296 CACAAGTGGCGCCACTAGATAAGAAAT----TGATTG--CTATCATTCGTCCAGGAGAGCAGT-------GTGTGTTTAATACCCTTCACCTTCTAG---AATcataaagaaaaatcaatgacTCAAAATACGGAATCACATATATTGACCGAATTACCTTCAAATTACATTCCGGTGAGT
i caeRem4.Crem_Contig24 C 0 I 284
s caeSp111.Scaffold514   130862 147 -   141934 CGCAAGTGGAGCCA-TAGATAAGAAAC----TGATTGTTCGATCAGTTGCCCCTTGAAATTCA-------TTCTGTACAATACCTGCAA----------------------GAAGTCAATGAATCAACATACGGAATCACAAATATTAATGGAATTGCCCTCGAATTATATCCCGGTGAGt
i caeSp111.Scaffold514  C 0 I 90
s caePb3.Scfld02_62      470693 169 -   783054 CACAAGTGGAGCCA-TAGATAAGAAAT----TGATTG--CAATCACCAAGttattgagagagagagagacttgTGTTTGATACTTTTAATTCTTTG----AACCGTCAGG-AAATTTGATGAGTCTTAAAACTGAATCACAGGTTTTGGTAGAACTACCAAGTAACTATATTCCGGTAAGT
i caePb3.Scfld02_62     C 0 I 2
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=-1483.000000
s ce10.chrX             1272918 32 + 17718866 --TTTGGGTAGTTAGGCTTTTGAAAAACAAACGT------------
s cb4.chrX                88342 22 + 21540570 ATTTGTTGTA---------ttcaaaagcgaa---------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      470864 35 -   783054 --TTTCTGTA---------ATGAAtagtaaatttgaaaataaacat
i caePb3.Scfld02_62     I 2 I 1020
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131009 90 -   141934 I
e caeRem4.Crem_Contig24  347054 284 +  1162296 I

a score=562.000000
s ce10.chrX             1272950 10 + 17718866 AGGAATCTGA
s cb4.chrX                88364 10 + 21540570 aaaaaccTGA
i cb4.chrX              C 0 I 200
e caePb3.Scfld02_62      470899 1020 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131009 90 -   141934 I
e caeRem4.Crem_Contig24  347054 284 +  1162296 I

a score=0.000000
s ce10.chrX             1272960 702 + 17718866  
e caePb3.Scfld02_62      470899 1020 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                88374 200 + 21540570 I
e caeSp111.Scaffold514   131009  90 -   141934 I
e caeRem4.Crem_Contig24  347054 284 +  1162296 I

a score=273.000000
s ce10.chrX             1273662 1 + 17718866 T
s cb4.chrX                88574 1 + 21540570 t
i cb4.chrX              I 200 C 0
s caePb3.Scfld02_62      471919 1 -   783054 T
i caePb3.Scfld02_62     I 1020 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131009 90 -   141934 I
e caeRem4.Crem_Contig24  347054 284 +  1162296 I

a score=74254.000000
s ce10.chrX             1273663 204 + 17718866 TCCAGGAAGCGTCTAGAAGATGCAAAATCATCGTTGTTGGGGCCAAAAATGCAGGAAAATCGACTTTTATTGAACGTGTAGAATTTGGAAAGTTTCATGAAGAGAAACAGACGGAAAAGTTGTATCGTGTTATTGCAAAAAAGGTGTTTGAACAAACATTGACCGTGGAACTGATAGAGAAAGGTTCCCATTTTTCTGTAATAA------------
s cb4.chrX                88575 192 + 21540570 tttaggAGCCATCTCGACGGTGCAAAATTCTGATTGCTGgctcaaaaaaagttggaaagtcAGCATTCATTGAGAGAAttgaatctggaaaatttaatgACAAAAAAGCTGAGGAAAGTTTGCATAGAGTGATTGTCAAGAAGATTTTTGAGCAGAAGCTGACAGtggaacttctggaaaaaggtAATTTTA------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  347338 201 +  1162296 tccaGGAGCCTCCACGAAGATGTAAAGTTATCATTGTTGGTGCAAAAGAGGTTGGAAAATCTGCGTTCATTGAAAGACTAGAATTTGGACGATTCAATGAAGAGAAATCGAAGGAAAAATTGTACCGCGTCGTGTCTAAAACAATCTTTGGACAAACCTTAACAGTGGAACTTGTGGAGAGAGGTAAATTTTCTATACTAA---------------
i caeRem4.Crem_Contig24 I 284 I 110
s caeSp111.Scaffold514   131099 202 -   141934 TTCAGGAAGCAGCTCGTAGATGCAAAGTCATTTTTGCTGGAGCCAGCAATGTTGGAAAGTCTGCATTCATTCAAAGAATCGAATTTGGTAAATTCAACGAGGacaaaataagagaaaaattgtaCCGAGTAGTCACAAGGAAAGTCTTTGAGCAAACACTGACCGTAGAACTTGTCGAGAAAAGTACGCC------------AAAt--tatacaat
i caeSp111.Scaffold514  I 90 C 0
s caePb3.Scfld02_62      471920 206 -   783054 TCCAGGAAGCTTCTCGAAGATGTAAAGTTATCATTGTTGGTTCCGCGAATGTTGGTAAATCAACATTCATCGAGCgtattgaatttggaaaattcaacGAGGAGAAGTCTAAAGAGAAGTTGTATCGAGTCATTTCCAgaaagatttttgagcaaacaTTGACAGTTGAACTTGTTGAGAAAAGTATGTCGT----------AAATAGAAGAAAAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=-9687.000000
s ce10.chrX             1273867 119 + 17718866 TGTCTATAGGTTAAAGTGAATTTTC-------TAGATCTTGGTGGCTTAACGAATGAAGATAATGGATTCAAAAAGGTAAATTTTTATTGACATTTATTCAGGGTTGCTGAAAAAAAAA------------TTTTAAT-----------
s cb4.chrX                88767 112 + 21540570 TGTT------TTGAGACGAACCTTA---ATTCGAGAT-TGAACCGTTttaatgaatcaaaaaat---------atggcATTCtttttttGCTATAAGTACGGGAGT-------AAATAGTTGAAACGATGTTGTCAAT-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   131301  69 -   141934 ----------tttttatcaattctg---CTTTTAGATATTGAAACTGTTGTTAATGTGGAACAC-------------------------------------GGAGT-------ACAAAG------------TGTtagt-----------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      472126  83 -   783054 ----------TggcaataaattttgaacaatttagGTTTGGAGGAGTTCACTGATGAAGAAAAC-------------------------------------GGATT-------GAAAAG------------tgtaagaagaaaaatctt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeRem4.Crem_Contig24  347539 110 +  1162296 I

a score=-5475.000000
s ce10.chrX             1273986 97 + 17718866 --CGGAAAAGTTAGGTATATTACAGAAAATTCaaaaatattaaaatttctttgaaaattgataaattaaattgtaaaaatggagaaatttttttagaaa
s cb4.chrX                88879 83 + 21540570 TTTGGA----CCAAGTTCAACACAG----TGCGACAATATCaggtaaattttcagatttg---gaaGAATTT--ACGAATGGTGAAA--CTCTCGGTG-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      472209 34 -   783054 ctt---------------------------------------------ttttgcaattca---aaataattt-----------------ttttcagcaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131370  0 -   141934 C
e caeRem4.Crem_Contig24  347539 110 +  1162296 I

a score=0.000000
s ce10.chrX             1274083 8 + 17718866 tcaaaaaa
e caePb3.Scfld02_62      472243 0 -   783054 C
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                88962 0 + 21540570 C
e caeSp111.Scaffold514   131370 0 -   141934 C
e caeRem4.Crem_Contig24  347539 110 +  1162296 I

a score=-5422.000000
s ce10.chrX             1274091 85 + 17718866 tcgaaaaaaaatatatttaaaaaattCCGTGTAATTGAATATGTGCTTAATGGCTTAATAATAAGAATAATTAGAAATTCCAAAA------
s cb4.chrX                88962 58 + 21540570 -CTAAACAGGTAATATTTTATAACT-----------------------------TTGAGGAGTACattgttttg---ttttatagCAACAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   131370 29 -   141934 ------------------------------------------------------ttgagaaaaaaactgtttac---CTTTTCGTT-----
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      472243  0 -   783054 C
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeRem4.Crem_Contig24  347539 110 +  1162296 I

a score=682.000000
s ce10.chrX             1274176 9 + 17718866 TTCCAGACT
s caeRem4.Crem_Contig24  347649 9 +  1162296 TTCCAGCAA
i caeRem4.Crem_Contig24 I 110 C 0
s caeSp111.Scaffold514   131399 8 -   141934 -TCTAGCAG
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      472243 0 -   783054 C
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89020 0 + 21540570 C

a score=22926.000000
s ce10.chrX             1274185 113 + 17718866 GAAATGAGAGACGTGGATGCAGTTTTATTATTTTACGCGGCTGATGACCTGGAATCTTTTAAGCAGCTCAAGGAGAACCTGGTACATGTTCAGAGGAAGGTT----------------------------------------------TGAATT-------------------------TTTAT
s cb4.chrX                89020 147 + 21540570 ---ATGAAAGATGTAGACGCTCTGATTATCTTTTATGCTATAAACGATTTGCAATCCTTTGAAATGATGAAACACAATTTGCCGAATCTTCAAAGAAAAGTA--AG----------AAATT----------------------GATCACAGATTGAGTCGtacagttcaaaaaaaaacatctat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  347658 110 +  1162296 GAAATGCGAGATGTCGACGCTATGATCATGTTTTATGCAACAGATGATTCTCAATCCTTCAACTTGATCAAAGAAAACCTGTTGAGTGTTCAGAGAAAGGT-------------------------------------------------GATT-------------------------TTTGT
i caeRem4.Crem_Contig24 C 0 I 380
s caeSp111.Scaffold514   131407 135 -   141934 GAAATGCGTGATGTTGATGCAATCATTTTATTCTACGCAATAGATGATTCCGATTCATTCGATAGGATCAAAAAGGATCTGATACACGTTCAGAGAAAGGTAACAttgaaattatcaaatt------------------------ttatgaatt-------------------------ttcgt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      472243 157 -   783054 gaaacaCGGGATGTGGACGCTGTGATCATGTTTTATGCGACAAATGATGCGGATTCATTCAAAGAAATTCGGAAAGGTTTGCAATATATTCAGAGGAAGGTA--AGTAAACTTTCTTAATTGGTCAGAAACTTGTTTACCGGCGATCGTGAATT-------------------------ATTCC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=-10074.000000
s ce10.chrX             1274298 38 + 17718866 --TCCTAATATGC----------------------------------------------GGTGCTTAAAAAAC-ACATTTT-------GACT--CA
s cb4.chrX                89167 92 + 21540570 gacaaaaatatttcagcgcttagaaaaaaagagagtagAAAGAGTTACTTAATTGTGAGGGTTCTTGACAACACACATAATTGTGAACAGTT----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   131542 41 -   141934 TATAGGAACATTA----------------------------------------------TAATCTTATAAATTAAcacttt-------attttt--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      472400 35 -   783054 TGTA--AACATGT----------------------------------------------GGTTCTGATCAATT--TACGAT-------AGTT----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeRem4.Crem_Contig24  347768 380 +  1162296 I

a score=64478.000000
s ce10.chrX             1274336 130 + 17718866 TTCCAGATCCCACCCAACGCAAATATCACAGTAGTCGGAACAAAAGCTGACGTCAAAGAGATGCAGGTGCAGTGGCAGGAAGTTGATAGTTTTGCTGAGAATCAGGGTTTTTCTTGTTTTGAGACAAGGT
s cb4.chrX                89259 130 + 21540570 TTCCAGATACCTCCATCGGCGGCCATCACGATTGTTGGCGGAAAAGCCGATGCTTCAGAAATAAAGGTTCCTTGGCGGGATGTGGACACATTTGCAGAAACTCAAGggttttcttgttttgagaCAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  348148 130 +  1162296 tttcagatacccCCGCATGCAAGCATAACCATTGTCGGCTCGAAAGCAGATGTAAAAGAAATGACAGTTGACTGGCATGATGTCGACACATTTGCAGAAAGCCAAGGGTTTTCGTGTTTTGAGACAAGGT
i caeRem4.Crem_Contig24 I 380 I 234
s caeSp111.Scaffold514   131583 130 -   141934 cgatagaTATCTCCACATGCTAGTATCACTATTGTTGGCACAAAAGCAGATGTAAAAGAACTGAAAGTTGGATGGCACGATGTCGATACTTTTGCCGAGGAGCAAggtttttcatgttttgaaacaagGT
i caeSp111.Scaffold514  C 0 I 7
s caePb3.Scfld02_62      472435 128 -   783054 --ACAGACGCCTCCAAATGCGAGTATCACTATTGTCGGCACGAAAGCAGATACAAAAGAGTTGAAAGTTGATTGGCATGATGTAGACACGTTTGCAGAACAACAAGGGTTTTCCTGTTTTGAGACAAGGt
i caePb3.Scfld02_62     C 0 I 24
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=-9095.000000
s ce10.chrX             1274466  33 + 17718866 -----------ACCGCATTTGAATAAGAATCCA-------------------------------------------------------------------TAAAACTCAAT
s cb4.chrX                89389  40 + 21540570 ATAGGGCcaacaatatatttttttttaaccaga----------------------------------------------------------------------aaattca-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   131720  34 -   141934 -----------ATTATGGTTGGTTATAAACTGA------------------------------------------------------------------GTGCAACATAAT
i caeSp111.Scaffold514  I 7 C 0
s caePb3.Scfld02_62      472587 100 -   783054 -----------ACTatgttttttgacaaaatagtATCACCGACTATTTGGCAGACTGCCGTGAATTCTTCATGTTTAGAGAACATTACCcaaatttttcgtgaaaactAAC
i caePb3.Scfld02_62     I 24 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeRem4.Crem_Contig24  348278 234 +  1162296 I

a score=31024.000000
s ce10.chrX             1274499 115 + 17718866 --------------TTACAGCTCAAAAACTGGGGTGAACGTGGAAATAATACTGCATGACATTCTGGAGACCATTTTTGAACGTAGATTTGCAAGTGATGATGATGAAGTTTTGAGCAATCAACCTGTA
s cb4.chrX                89429  49 + 21540570 -------------------gctcaaaaactgGTGTCAATGTGGACATAATCATGCAAGATATTTTGGA-------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  348512 115 +  1162296 --------------TTACAGTTCTAAATCTGGTGTAAATGTGGAGATAATTTTACAAGACATTCTGGAAGCAGTATTTGAGAAACGATTTTCaacagatgaagaagatgttcTGATTGATCAACCTGTA
i caeRem4.Crem_Contig24 I 234 C 0
s caeSp111.Scaffold514   131754 116 -   141934 AG-------------TTCAGCTCGAAATCAGGAGTAAACGTGGAAATCATTTTGCAAGACATTTTGGAAGCAGTTTTCGAACGACGGTTTGCTTTTGACGACGATGTTGTTTTGAGCGATCAACCTGTA
i caeSp111.Scaffold514  C 0 I 320
s caePb3.Scfld02_62      472687 129 -   783054 CAGTATCCtgatattttcagctcaaagaCCGGAGTCAACGTTGAGATTATTATGCAAGACATATTGGAAGCTATTTTCGAGAGGAAGTTTGCCACCGACGATGAAGAAATTCTGGTTGAACAACCTGTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=-320.000000
s ce10.chrX             1274614 5 + 17718866 AGTTT----
s caeRem4.Crem_Contig24  348627 5 +  1162296 Agttt----
i caeRem4.Crem_Contig24 C 0 I 31
s caePb3.Scfld02_62      472816 9 -   783054 AGTCAATGA
i caePb3.Scfld02_62     C 0 I 1940
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89478 0 + 21540570 C
e caeSp111.Scaffold514   131870 320 -   141934 I

a score=0.000000
s ce10.chrX             1274619 14 + 17718866 GAAAGGGTTATAAA
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89478  0 + 21540570 C
e caeSp111.Scaffold514   131870 320 -   141934 I
e caeRem4.Crem_Contig24  348632 31 +  1162296 I

a score=-6215.000000
s ce10.chrX             1274633 362 + 17718866 TTTGGAAATTTGCGTTTTTAACATTTTTAAAAATACTAGAAACTTCAAAATTGGCAAATAACAAATTTGCCAAAAAATGTCATGTTCATCAAAGAAAATTGTGTATCAAAAATATATTTATCCTGAAAAAAAAGTACAGTAATTCTGAAAATAACGGGGAAAATAATTTTTCTAGTGCTGAAGTGCTTCACCGGTTTCCGACCTGCCTTCAAGACTGCCTATCCCTAGAATATTTTTACAAGGCAGACAGGAAACCCCCTTTTTACATATCTCAAATTCTTGTTTTAAAATTTTTGAAGCTGGAAAATGTGCCAGCATGCTAACTACGTGCACTAGACTTTTACCTAAATTTCAATTTCATT
s cb4.chrX                89478 105 + 21540570 -------------------AACAGTTTTCGAAAGAC-----------------------------------------------GTTTCGCAA----------------------------------------------------CAGAGGACGACgaagaaa------ttttcagtgat-------------------cAACCTGTCAGTGAAAATGT------------TACTTTTTCGAG--------------------------------------TGTCTT----------------------------------------------------------------TTCAATTGGTAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131870 320 -   141934 I
e caeRem4.Crem_Contig24  348632  31 +  1162296 I

a score=11102.000000
s ce10.chrX             1274995 114 + 17718866 TTCCAGGTCTACGCCTCCACGGTTCTAACGAGCAGGCAAGAAGAACCACCACGTGTTAATGGGTACTGCTGGATGCCGAATATTCCAATATTTTCGTTTTTTCGCAGTAATGAA-
s cb4.chrX                89583 105 + 21540570 TTGTAGGTGTACGCAACCACAGTTCTGACAAGCAACAATGAAGAGCCAGCAATAGTAAATGGATTTTGCTGG---------ATCCCattaatttcatattttcgtcGTAAAGAA-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  348663 115 +  1162296 TTTTAGGTATATGCTTCCACAATCTTGACGAGTCGGACTGAAGAGCAGCCACAGGTGAATGGCTACTGCTGGATACCCAGAATCCCGTTATTTTCTTACTTCCGTCGagaatgaa
i caeRem4.Crem_Contig24 I 31 I 379
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131870 320 -   141934 I

a score=0.000000
s ce10.chrX             1275109 1885 + 17718866  
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89688    2 + 21540570 I
e caeSp111.Scaffold514   131870  320 -   141934 I
e caeRem4.Crem_Contig24  348778  379 +  1162296 I

a score=-69.000000
s ce10.chrX             1276994 147 + 17718866 AGACTGGTTTGGAGTTTCTGGTACAGCAACTAC--ATAAATTACCTTTTATTTCAAATTAGATAACATTTCTTATTTCAAATCGACGGCAAAAGTTTCAGATAAACTTTTGAGACACACAAAATAACTTTTTTACTA---ATTTCAACGTGT
s cb4.chrX                89690 118 + 21540570 AAACTGATTTGGGAAGTCCATCACAGGAATTCCGAATAAA--------------ACGTTGGATAACGTCTATTA----GAATC--------ATTTATTAACCTAACTCT-----CCCATAAGACGTTTTCGTTGCtttatattttaat---t
i cb4.chrX              I 2 C 0
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   131870 320 -   141934 I
e caeRem4.Crem_Contig24  348778 379 +  1162296 I

a score=-305.000000
s ce10.chrX             1277141 32 + 17718866 TTTTTTTTTCATA------------AAAGCAGAAGCTTCATAGT
s cb4.chrX                89808 32 + 21540570 ttctttttgcg-ATTGAGTGGTACCAagacaga-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   132190 25 -   141934 ttcttttttca-a------------gaaacggA------CTAGT
i caeSp111.Scaffold514  I 320 C 0
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeRem4.Crem_Contig24  348778 379 +  1162296 I

a score=35323.000000
s ce10.chrX             1277173 138 + 17718866 --AAAAAAATTAAGTAACTTAATCCATTTGAGTGCATGAGAAAGTTATGTCTCTGGCAACACTCTGAATATGACAGAGAAGGCTTTGTTTGCAATTGGCATAAAACAAGTATGTGGTTTTACGCGTTTTTCTTTTTCTCA
s cb4.chrX                89840 118 + 21540570 ----aaaagaagggTAACTTAATCCATTTGAGTGCATGAAAAAGTTATG--TCTTTCATCTCTCTGAATATGAC------GGCTTTGTTTGCGATCGACTGAGAATTGgc---tttcattc-------ttttttctctta
i cb4.chrX              C 0 I 1295
s caeRem4.Crem_Contig24  349157 123 +  1162296 --AGGAAGAGAAAGTAACTTAATCCAGTTGAGTGCATGAAAAAGTTATG--TCCGGCAACTCTCTGAATATGAC------GGCTTTGTTTGCAGTTGGCATAAAACTAGCgtgttctttca-------tttcatttctca
i caeRem4.Crem_Contig24 I 379 C 0
s caeSp111.Scaffold514   132215 122 -   141934 AAATGAAAATCAAGTAACTTAATCCAGTTGAGTGCATGAAAAAGTTATG--TCCGGCAACTCTCTGAATAAAAC------GGCTTTGTTTGCGGTTGGC---AAAGTAGCGTGTTCTTTCA-------ACTTTATTCTCA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=310.000000
s ce10.chrX             1277311 59 + 17718866 TTGGTCAAATGACTCAGCTGCTTCTTCCATTCTCTGAAAATCAAATCTTTTTGCTCTTT--
s caeRem4.Crem_Contig24  349280 44 +  1162296 ---ctaAAATGAGTCAG----TTTTTCCTCTCTCAAATG--------TCTTTCCGCTTT--
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   132337 52 -   141934 ---CCAGAATTActca------ttttcctcttttaaCGGACggaaatccttttttcttttt
i caeSp111.Scaffold514  C 0 I 1987
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I

a score=643.000000
s ce10.chrX             1277370 11 + 17718866 -----GCCCTCTTTTG
s caeRem4.Crem_Contig24  349324 16 +  1162296 TACTGGTCTTCTTTTG
i caeRem4.Crem_Contig24 C 0 I 431
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I

a score=0.000000
s ce10.chrX             1277381 491 + 17718866 TTGAACCATGGATTAAAAAGTGTGCTGTGTGAACTTTTACTTTTGAGACAGGGAAACTTTTTTTTCAAAGATTTTTGGCCGGGTAATGTTTTTGCAGAATTTGGAATAGGACTAACTTTTTCCAAATCTTTTTTTCCAATACATATAATTGAAACAGGATATATACATTTTTTTTCTTCAAATAAAATCATGGTACATTTACCATTAACTATTTTAGTAAATGTAAAACTATTGGAGTAAATTGCAAACTAGGAAGTAATTTTTGCAGATTGTTAAATTTATATCTCCAGACAAATTTTAGTTATGCTTAATCCGCCTATGATTTTTCCCATGCACAAGTAATTTACAAAACCTTTTTTTTAAGTTGAAAATTCAAAAGTATTTTTGTTTAGGCCACAATCTGCAACAAAGCTTCCAGCCAGCTTCTCCCACCCATTTACTACAACTTTCCCACATGCAACTTTCCAGAAAAAACCTATCAAAAACTGCAC
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I
e caeRem4.Crem_Contig24  349340 431 +  1162296 I

a score=408.000000
s ce10.chrX             1277872 53 + 17718866 AAAGTGAAGCCAATCATGCGGGA-AATTCATTTTTTTTTCCTTATTCTTGAATA
s caeRem4.Crem_Contig24  349771 38 +  1162296 aaaatcaaatcaaccATGCAgaacaatatattttttgg----------------
i caeRem4.Crem_Contig24 I 431 C 0
e caePb3.Scfld02_62      472825 1940 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I

a score=10464.000000
s ce10.chrX             1277925 82 + 17718866 TCTAAACAATAAACTTCCACGTCAACTTTCATAATAAAATCCATTTAGTC----GAAG-AATTCTCAAGGTTCATTAGTCCGGAAAA
s caeRem4.Crem_Contig24  349809 81 +  1162296 ---aaacaaagaaaaatcacGTCAACCTTT---AGACAATCCATTTGGTTTTTGTTAGAATCTCTCAAGGTTCATTAGGCTGGAAAA
i caeRem4.Crem_Contig24 C 0 I 793
s caePb3.Scfld02_62      474765 82 -   783054 tctaaacaaa-agAAACGACGTCAACCTTT---AGACAATCCATTTGGTTTTTGTTAG-ATTTCTTATGGTTCATTAGTCCGGAAAa
i caePb3.Scfld02_62     I 1940 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I

a score=407.000000
s ce10.chrX             1278007 47 + 17718866 CTCGGCAAGAATTCC-------ATAACTAGAT------------------TCACTTCTCTGACAATGCCAAT
s caePb3.Scfld02_62      474847 70 -   783054 ct--gcaaaactttttcttttgctcaCTAGATAAGATTTGGgtaatttcatttcttctccgACAATGGTAAT
i caePb3.Scfld02_62     C 0 I 2742
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I
e caeRem4.Crem_Contig24  349890 793 +  1162296 I

a score=0.000000
s ce10.chrX             1278054 1977 + 17718866  
e caePb3.Scfld02_62      474917 2742 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I
e caeRem4.Crem_Contig24  349890  793 +  1162296 I

a score=3814.000000
s ce10.chrX             1280031 201 + 17718866 TCTTAATGTTTTCCAATCGACGATACCTCCGTGTTTTGTTCACCTCAGTTCACCCAGTTATGAATAAAACAGGCTTCGGAACAAAAA----AGGGGATAGATTGGATATGATATGGCTCAGGGGAGCAC--ACTCATACCCCCACCCTTTTATTTTCCCTTATTCTTCCCCCCCCCCCTCCTATGAC-TTAGAACATTGTAAGTCTTC
s caeRem4.Crem_Contig24  350683 165 +  1162296 TTTTTGTGTATCATAATTGAC--TTCTTCCATGTATTAT--------GCTCAGTTAGTTATGAATAA--CAGGCTTCGGAACAAAAAGAGTGAGAGATAGATTGGA---------------GGGGGCACCGACTCATTCGCTCGCTATT----------------TTCTCGCTACGACTTCTTTGTCGTTAGAACATTCTAAGATTTC
i caeRem4.Crem_Contig24 I 793 I 1045
e caePb3.Scfld02_62      474917 2742 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I

a score=0.000000
s ce10.chrX             1280232 4048 + 17718866  
e caePb3.Scfld02_62      474917 2742 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I
e caeRem4.Crem_Contig24  350848 1045 +  1162296 I

a score=1105.000000
s ce10.chrX             1284280 37 + 17718866 ACGATTTCTGAC-----CTTTCGGAATTTTGAACTAAACCCC
s caeRem4.Crem_Contig24  351893 38 +  1162296 ACATTTTCCGACAttctttttccgaatttt----tagACCCC
i caeRem4.Crem_Contig24 I 1045 C 0
e caePb3.Scfld02_62      474917 2742 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I
e caeSp111.Scaffold514   132389 1987 -   141934 I

a score=993.000000
s ce10.chrX             1284317 23 + 17718866 TCTAAACTTCCAAAGATCTCAAC-
s caeRem4.Crem_Contig24  351931 20 +  1162296 ----AACTATCAAAGACCATTCAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   134376 23 -   141934 TCCCAACTATCAAAGAGCACTCT-
i caeSp111.Scaffold514  I 1987 C 0
e caePb3.Scfld02_62      474917 2742 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I

a score=113.000000
s ce10.chrX             1284340 9 + 17718866 TTGTACATC
s caeRem4.Crem_Contig24  351951 4 +  1162296 -----TTGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   134399 4 -   141934 -----CTTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      477659 9 -   783054 TCATATTTC
i caePb3.Scfld02_62     I 2742 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                89958 1295 + 21540570 I

a score=70424.000000
s ce10.chrX             1284349 230 + 17718866 CCACGCAGCCTAAACTTTTCATGCATACTTTACGTTAAAGTCAACCCA----ACAAAAAAGCGGTTTTCCC----------CATTTTTTTCGTCC---------GCT--------CAAGATAACGCATTAAATGGAGCA-----------TTTTTCTCGTTGAAAGGGTGCCGGGGAAGAAAGTTTACGCATCATTGG----------ATGGTATGCATTAAGA-----------------GAAGAGGG----------GGACCCTACTTTACATTAATTGCTCACTTGTTGGTTTTTTACCACCTTTC
s cb4.chrX                91253 266 + 21540570 CCCCGCACCCTGAATTTTTCATGCATACTTTACATTAAAGGAAAAAGTTggcacaaaaaaaagttttgccc-------CTTTCTTTCCAACGGCCTTCATAGCCGCTTTGTTCTGCGTGATAACGCATTAaacggagt------------ttttt----------------------tttaagttcacGCACCACTGGGTCAAGTCGGCTGGTGTGCAttaaaagaaaggaaaaa-tggTGGGAGTAGGAGGAGAAAGAGACCACTACTTTACATTAATTGTTTTC-TGTTGGTTTTTCGTCATCTTTC
i cb4.chrX              I 1295 I 1079
s caeRem4.Crem_Contig24  351955 242 +  1162296 CCCCGCACACTAAACTTTTCATGCATACTTTACGCCGAAGACa---------acagaaaaaaggttttccc-------atttttttcttcaggcC----TAG--GGTTTTTTGTGCTTGATAACGCATTAAATGGAg-------------ctttt----------------------gaaaagtttacgCACCATTGGGTCAAGTATGTTGGTATGCATTAAGAGAGAAGAGGGACCAATCGATGTGGG----------GACCACTACTTTACATTAATTGctctcttgttggttttttgccaccttct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   134403 223 -   141934 --CCCCACACTAAACTTTTCATGCATact---------atgaa---------aaacaaaaaaggtttccct----------tctttttttaccTC---------GCTTTCTCTTGCCTGATAACGCATTAAATag---------------ctttt----------------------gaaaagtttaCGCTTCATTGGGTCAAGCACGTTGGTATGCATTAGGAAAGAGAAGTAGGGAATTGGAAGAGC----------GAGCACTACTTTACATTAATTGCTCACTTGTTGGTTTTTCGTCACCTCTC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      477668 229 -   783054 --CCCCGCACCAAACTTTTCATGCATACTTTACATCGGATACA---------ACGGAATAAAGGATTTCCTGGCCATTCTCTCCCATTTtcaccc---------actttttttt---tgataacgcATTAAATGGGGAAGAAGGGGGGCTCTTT-------------------------AAAGTTCACGCATCATTGA---------CTTGGTATGCATTTAGAGTGA-------------CGAAGAAA----------GGGGACTACTTTACATTAATTGCTCACTTGTTGGTTTTTTGCCACCTCTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=546.000000
s ce10.chrX             1284579 1 + 17718866 T
s caeRem4.Crem_Contig24  352197 1 +  1162296 t
i caeRem4.Crem_Contig24 C 0 I 3724
s caeSp111.Scaffold514   134626 1 -   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      477897 1 -   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I

a score=-1102.000000
s ce10.chrX             1284580 2 + 17718866 CT------
s caeSp111.Scaffold514   134627 2 -   141934 TT------
i caeSp111.Scaffold514  C 0 I 213
s caePb3.Scfld02_62      477898 8 -   783054 TCCCATTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=546.000000
s ce10.chrX             1284582 56 + 17718866 ACGACCAGCCTACA-----------------TTTATTTTGCGTCTGATGCTCTTTAACA-TTCTGTTGTTATTT
s caePb3.Scfld02_62      477906 74 -   783054 AGATCTAGTATACAAACAAAAGAAGTTGGTTTTTACTCTATATCTTCCATAATTTATtagttttgttgttattt
i caePb3.Scfld02_62     C 0 I 693
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   134629 213 -   141934 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=0.000000
s ce10.chrX             1284638 2497 + 17718866  
e caePb3.Scfld02_62      477980  693 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   134629  213 -   141934 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=3120.000000
s ce10.chrX             1287135 113 + 17718866 AACCCTTCAGACACCCCGCCTTT-TCATTC----ACATCTATGAATTTATTTTCAGCTCATTATCTATGAATTGGGGCTCTGTGTTAGCTCACTTTCACAGAAGGAAGC---CAAGAAGTT
s caeSp111.Scaffold514   134842 116 -   141934 AATCTTTCAGACAACTTGCTTTTCTCACCCCTCAACATCTATGAATTTCTTCAACTCTCATTATTTATGAATTCG-----TAGTTTAGTCACTTTTCAAAGAGTGGATCATGAAAGAAGTT
i caeSp111.Scaffold514  I 213 I 248
e caePb3.Scfld02_62      477980 693 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=0.000000
s ce10.chrX             1287248 2028 + 17718866  
e caePb3.Scfld02_62      477980  693 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   134958  248 -   141934 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=702.000000
s ce10.chrX             1289276 23 + 17718866 TCTCATTTTTCCCTTTCC---CAGGA
s caePb3.Scfld02_62      478673 26 -   783054 tctttttcttcctttttcaaacaaaa
i caePb3.Scfld02_62     I 693 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   134958 248 -   141934 I
e caeRem4.Crem_Contig24  352198 3724 +  1162296 I

a score=-998.000000
s ce10.chrX             1289299  6 + 17718866 -------------------TCTATT---
s caeRem4.Crem_Contig24  355922  6 +  1162296 -------------------TCTGTT---
i caeRem4.Crem_Contig24 I 3724 C 0
s caePb3.Scfld02_62      478699 28 -   783054 tctACTACCCTATTTGggatctcttctt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   134958 248 -   141934 I

a score=33748.000000
s ce10.chrX             1289305 161 + 17718866 TTCCCATGTTAGGGGTGGGGGGCCCGTGTAAAACAAACGCCGAGGACACTTTGTCTTGCGCGGGTGAAAGGATCCAATTTCTCAACTCAACTCATCCTAATGAGCGTTAAATTCCACGTTTTTTTGCGTCTAATATTTCATCACTTTTTCTAACTTT----TTTT---
s caeRem4.Crem_Contig24  355928 138 +  1162296 TTCCCATGTAAGGCGT---------GTGTaaa--aaaaGCC-GAGACACTTC-TCTC----------AAGGATCCAATTTC-CAACTCAACTCATCCTAATGAGCGttaaatttcacttttt------tcatacacatcagtttttttttctttctacgaccttcttt
i caeRem4.Crem_Contig24 C 0 I 641
s caeSp111.Scaffold514   135206 132 -   141934 TTCCCATGCTAGGAGA---------GCGTaaa--aaaaGCC-GAGACATTTC-TCTG----------AAGGATCCAATTTC-CAACTCAACTCATCCTAATGAGCGTTAAATTTCACTCTTC------ACACACgtttcatcattttattcattatt----cTTTG--
i caeSp111.Scaffold514  I 248 C 0
s caePb3.Scfld02_62      478727 136 -   783054 ttcccatGTGGAGAGT---------GTGTaaa--aaaaGCCGGAGACACTTC-TCTC----------AAGGATCCAATTTC-CAACTCAACTCATCCTAATGAGCGttaaatttcactttttt----aacatacgtttcatc-ttttttccgttttttg--tttct--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I

a score=380.000000
s ce10.chrX             1289466 7 + 17718866 ACTGGTT
s caeSp111.Scaffold514   135338 6 -   141934 ACTGTT-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      478863 7 -   783054 actgCTT
i caePb3.Scfld02_62     C 0 I 6461
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeRem4.Crem_Contig24  356066 641 +  1162296 I

a score=242.000000
s ce10.chrX             1289473 4 + 17718866 TTTA
s caeSp111.Scaffold514   135344 4 -   141934 TTCA
i caeSp111.Scaffold514  C 0 I 580
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeRem4.Crem_Contig24  356066 641 +  1162296 I

a score=0.000000
s ce10.chrX             1289477 2654 + 17718866  
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   135348  580 -   141934 I
e caeRem4.Crem_Contig24  356066  641 +  1162296 I

a score=444.000000
s ce10.chrX             1292131 35 + 17718866 CCAGCCAGTAATTGCTG--TAACCTTTTGGAGATGAC
s caeRem4.Crem_Contig24  356707 33 +  1162296 CCGACCCATAATTGTCGACTAACCTTTTTAA----CT
i caeRem4.Crem_Contig24 I 641 C 0
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   135348 580 -   141934 I

a score=6753.000000
s ce10.chrX             1292166 66 + 17718866 TCCCACGGATTTATGAGCATTTGCA-TATGGCATT------ACATACTTATTTGAACAATTTTCATTTTATTT
s caeRem4.Crem_Contig24  356740 64 +  1162296 TCCCACGGATTTACGAGCATTTGCATTTTGGGATTTAGAATACATAgttattaaa-----t----ttttatct
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   135928 63 -   141934 TTCTACGAATTTATGAGTATGTGCA-GTTGACATT----ATATATAATTATtaga-----tttcattttgttt
i caeSp111.Scaffold514  I 580 I 513
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I

a score=680.000000
s ce10.chrX             1292232 20 + 17718866 CGCTTTTC----TTTTACGGCCAA
s caeRem4.Crem_Contig24  356804 24 +  1162296 CCTTTTTCCATGTTTTACGACAAA
i caeRem4.Crem_Contig24 C 0 I 588
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   135991 513 -   141934 I

a score=0.000000
s ce10.chrX             1292252 1378 + 17718866  
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                91519 1079 + 21540570 I
e caeSp111.Scaffold514   135991  513 -   141934 I
e caeRem4.Crem_Contig24  356828  588 +  1162296 I

a score=100.000000
s ce10.chrX             1293630 1 + 17718866 C
s cb4.chrX                92598 1 + 21540570 C
i cb4.chrX              I 1079 C 0
e caePb3.Scfld02_62      478870 6461 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   135991 513 -   141934 I
e caeRem4.Crem_Contig24  356828 588 +  1162296 I

a score=4807.000000
s ce10.chrX             1293631 59 + 17718866 CAACTGGGTCCGGGTCCAATGTTCAG----CGGGG--------GGTAAAAATAATAATTAAATGATAAAAC
s cb4.chrX                92599 57 + 21540570 CATCTGTGCCTGAGTCTGATGCCCAT-TTTCTCGT--------CACGAAAATA-----TGATTGAAAAAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  357416 48 +  1162296 CATCTGTGTCTGGATCcaatgttcatattttttgt-----------------------tcatggaaaaaag
i caeRem4.Crem_Contig24 I 588 C 0
s caePb3.Scfld02_62      485331 66 -   783054 CATCTGTGTCTACTCCCAATGTTCATATTTCTGGGTTggttcccaaaaaaata-----taggGGGGAGAAT
i caePb3.Scfld02_62     I 6461 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   135991 513 -   141934 I

a score=64885.000000
s ce10.chrX             1293690 266 + 17718866 ---ACATAACTTAACTCATTTTTGTGG------------------------------GTTTCCTTGCATTTTCTTGTTTTCTTCCATCTCCCGCGACGTTTTTTTTCTGTCCGGACCCCCTTTTTTCTTGAGTCATTTCGTTATCCTATTGGGGGCTCTAAACCACCATCTGGGTAAATCATTCCTTTTTTCTTTTTTTGTTTCGTCTTTTTTTTCGCAAATAAACTCCGCCCACTCCTTGCTTTGATTACA--------TCCTCCCAT-GTCT---------CGGAATGGAAGAAGA---AGGAAAAAAAATGGAATAG
s cb4.chrX                92656 291 + 21540570 ACA-TACAATCTaacctatttttttgg-----aaccaTTGTATGTATGTAAGCGTCTGAGTGTTTGT--TTATATGTAT-----------CCATGAGtttttcttacttccttttctttcctttttcttcagtCATTTCGTTATCCTATTGGGTGCTCTAAACCGCCATCTGGGTAAATCATGTCCCCTTTCTTCtgtcttcg----ttttcttttacGTT-AACCT-CGCCTACTTCTTTCTTTGATTATATTGTCTTTCCTGCCGAC-AAATCCGCATCTTTGGGACAGAGttgag---tcaaaaaaaaaagaaatta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  357464 270 +  1162296 aaattacagCCTAACTCATTTTTGTGGGTTCCAACCGTCGGATGTA----------TGGGTGTGTGT--TTGTATGt---------------atgtgttttttcttcttcctt---ttttccttttctttagTCATTTCGTTATCCTATTGGGGGCTCTAAACCACCATCTGGGTAAATCATGcccctttttttttgtc---------tttttttcacaag-aaaTTCCGCCCACTCTTCGCTTTGATTACA-----TCTCCTCCCAACAAAATCCTTGTCTTCGGGGGCGagcgaag-----aaaaaaaaacggaatgg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   136504 238 -   141934 ---ataCAGCCtaactcattttttggt-----------------------------tgGTTCCTTGTG-ttgtatgt----------------------tttttttcttcct----cttcttttttcttcagtcaTTTCGTTATCCTATTGGGGGCTCTGAACCACCATCTGGGTAAAtcattcctttcttttttgcctcttt----tcttttttcacaag-AAACTCCGCCTA-CTTTCGCTTTGATTGCA----TCCTTTCTCTAAC-AAAT---------TTAAAGAGAAGGATG---GTGAGCAAAAACGGAATTG
i caeSp111.Scaffold514  I 513 C 0
s caePb3.Scfld02_62      485397 242 -   783054 -----ACAGCGtaactccttttttttg-----------------------------gggtcctgtgtgtttgtatg-----------------------tttttttcttcct-----tttttttcctttcagtcATTTCGTTATTCTATTGGGGGCTCTAAGCCACCATCTGGGTAAATCATGgctcttttctattttcttct----cgTCCCATCCTAAg-taactccgcccattttttgtcTTGATTACA--TTTTCTTACTCTCAT-GGTT--------GTTGGAAGGAAGGAAATATTTACATGGAAAAAGAGTTG
i caePb3.Scfld02_62     C 0 I 489
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=4926.000000
s ce10.chrX             1293956 10 + 17718866 AATTGTTCTT
s cb4.chrX                92947 10 + 21540570 aattgTTCTT
i cb4.chrX              C 0 I 201
s caeRem4.Crem_Contig24  357734 10 +  1162296 AATTGTTCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   136742 10 -   141934 AATTGTTCTT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=4369.000000
s ce10.chrX             1293966 33 + 17718866 GAGACAT---CGAATCGAATAAAGGTTACTTCTTTT
s caeRem4.Crem_Contig24  357744 36 +  1162296 GagacacacacatacacaaaaAAGGTTATTTCTATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   136752 36 -   141934 GAgacatacacacacacacaaaaagttatttttatt
i caeSp111.Scaffold514  C 0 I 252
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I

a score=54.000000
s ce10.chrX             1293999 51 + 17718866 TGGTGATTTAGCTGAGGTTCCTGGCTTTCTTGCTTGGTC--TGTCAGTCTGCG
s caeRem4.Crem_Contig24  357780 39 +  1162296 --------------AGAGTTGTGACTTCCTATTCAGTTCATTTTCTGTCTACG
i caeRem4.Crem_Contig24 C 0 I 94
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I
e caeSp111.Scaffold514   136788 252 -   141934 I

a score=0.000000
s ce10.chrX             1294050 138 + 17718866 ACTTGGATTTAGCTTAGGCTAGGGTTTCAGCTCAGGAGCTAGCTCAAGAGCTGGCGCAGGTAGGAGCTTGGTGAGAAAATTATTTTTTGGCTAATTTATGTTCAGGCTTCGGCATACTTAGGTCCAAGGTTTTCCTTT
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I
e caeSp111.Scaffold514   136788 252 -   141934 I
e caeRem4.Crem_Contig24  357819  94 +  1162296 I

a score=-718.000000
s ce10.chrX             1294188 174 + 17718866 TTTTGGGTCAAAGTTAGAGCCAAGTTTTGTTTAAGCTCCGGCTTCAGCTTTGATCTCGGGCTAGTCCGTTAGATCA-CGCT-CAAGTTCTAGTTGAAACTTATAATGCTTATAGTGACTTTAGCTATATGGCTACAGTTTTGGCTAAGGCTCGCGTTGATACTGAAATTGGGCTTG
s caeRem4.Crem_Contig24  357913 127 +  1162296 TTTtgagttacact----gacaaatt----------------gTCACTGTAGATTTtgagttacactgacaaatcGTCACTGTAGATTGtgagttacactgacaa-----atcGTCATTGTAG-------------GTTT-------gacttacactgac----aaattgTCATTG
i caeRem4.Crem_Contig24 I 94 I 89
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I
e caeSp111.Scaffold514   136788 252 -   141934 I

a score=0.000000
s ce10.chrX             1294362 157 + 17718866 GGCCACGATTAGGCTTGAGTGTACCAGGCGCCCAACTAGGCTCAGGTTTTGGCTCTGGATGGGGGTTGGGCTCATTTTCAAGCTAAGACCAACGCTCTGGGTTTGCTTTGAGTCAAACGGGGCTCAGGATAGAGATTGAAGCTTTGGCCCAGGTCAG
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I
e caeSp111.Scaffold514   136788 252 -   141934 I
e caeRem4.Crem_Contig24  358040  89 +  1162296 I

a score=-1341.000000
s ce10.chrX             1294519 152 + 17718866 TGATTGGCTT--GAATATTTGACAGCCTA---CAAAAAGTCTTAGAAGTGAGCTCAGGATAGTGTGGAAGTTCATGTTCAAGATCCAATTCCAGTTTGGAGAATCAGCTCTATTGCAATTTTAAGCTCTGGCTGTAGCTTTGCAAAACTTCTTTTTA
s caeRem4.Crem_Contig24  358129 102 +  1162296 CAGTTggctttgaaaaatttcacttcctctctcaattactctt-------------------------------ttttcactattcagct----------gaaaagtttccatttcagatttctgatcT--------------AAAATCCTCCCTCC
i caeRem4.Crem_Contig24 I 89 C 0
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                92957 201 + 21540570 I
e caeSp111.Scaffold514   136788 252 -   141934 I

a score=-1281.000000
s ce10.chrX             1294671 78 + 17718866 CTATTTTTTTTATGTTTTTTGTCTGCCACCTCGTTTCCCGAAACTCCCAGATTCACCATCATTGCTTGCCGCCTCATC
s cb4.chrX                93158 47 + 21540570 ctttttcttctacatttttc-tttcc-------tttcccacaattcc-----taatcttc------------------
i cb4.chrX              I 201 C 0
s caeRem4.Crem_Contig24  358231 56 +  1162296 GTAgttttctcacatttctc-TCTTCCAGCT-GTCGCCCCCATTT-------TTATCTTC-----------Cctta--
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e caeSp111.Scaffold514   136788 252 -   141934 I

a score=0.000000
s ce10.chrX             1294749 1 + 17718866 G
e caePb3.Scfld02_62      485639 489 -   783054 I
e caeJap4.Scaffold17966  106656 21847 -   140921 T
e cb4.chrX                93205 0 + 21540570 C
e caeSp111.Scaffold514   136788 252 -   141934 I
e caeRem4.Crem_Contig24  358287 0 +  1162296 C

a score=13258.000000
s ce10.chrX             1294750 41 + 17718866 TTCTTTCCCCTCATTTTTTT---CCTCGCTGTCTGAACTCGGTC
s cb4.chrX                93205 36 + 21540570 ----tgcggtttttctcttt---tttct-tgtctgaACTCCGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  358287 40 +  1162296 -tttttccgtttttttctct---tctctctgtTTGAACTTCGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137040 40 -   141934 -tatttctctctcatttttt---cttttctgtctgAACTTCGTc
i caeSp111.Scaffold514  I 252 C 0
s caePb3.Scfld02_62      486128 43 -   783054 -ttcttcgctatcccttttttcatctttctgtCTGAACTTCGTC
i caePb3.Scfld02_62     I 489 C 0
e caeJap4.Scaffold17966  106656 21847 -   140921 T

a score=52262.000000
s ce10.chrX             1294791 84 + 17718866 GACTTCAAAAGTTCACAATTGGATAAACCGGGTCCGCAATCAAATTTGGGGTGAGGCGGCTGTTTGCTAAAAATATGCCGACGA
s cb4.chrX                93241 67 + 21540570 GActtcgaaagttcaaaattgaataagctgg---taaaatcaaatttgg----------cTGTTTGCTAAAAATATGCCG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  358327 67 +  1162296 GACTTCAAAAGTTCACAATTGGATAAACCGG---TCAAATCAAATTTGG----------CTGTTTGCTAAAAATATGCCG----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137080 74 -   141934 gacttcaaaaattcgaaattggaTAAGCCGG---TCAAATCAAATTTGTGT-------GTTGTTTGCTAAAAATATGCCAAAga
i caeSp111.Scaffold514  C 0 I 42
s caePb3.Scfld02_62      486171 70 -   783054 GACTTCAAAAGTTCACAATTGGATAAACCgg---tcaaattgaatttgggC--------CTGTTTGCTAAAAATATGCCGA---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   84809 58 -   140921 GACTGCCAAAGTTCGAAATTGGATAAACCAG---cgaaattaaattttg----------ctattcgtcaaa-------------
i caeJap4.Scaffold17966 T 21847 C 0

a score=6909.000000
s ce10.chrX             1294875 45 + 17718866 CGACGAAAAAAAATGAGGCAACCACCAGATTTT--------------TGTGCCGCTCAA
s cb4.chrX                93308 36 + 21540570 --------AAAAATGAGGCAACCACCAAGTTTT---------------TTGTCGTTTCA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24  358394 38 +  1162296 --------AAAAATGAGGCAACCACCAAATTTT-------------GCTTGTCGTTTCA
i caeRem4.Crem_Contig24 C 0 I 10
s caePb3.Scfld02_62      486241 50 -   783054 ---------AAAATGAGGCAACCAccaaatttcttttctccgTGTGTCTTTTCGTTTTA
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17966   84867 34 -   140921 ttcccaaaaaaactaCGACGTCCGCTTCGTTTC---------------T----------
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   137154 42 -   141934 I

a score=8423.000000
s ce10.chrX             1294920 52 + 17718866 ACGAT---------GCACGTCGTCTTGTTTTCTCTGTTCGAAA-----CTGGAAAAAGAGAAGATT
s cb4.chrX                93352 48 + 21540570 ACGACAACA-----GCACATCATCGtttt-------ttggaaa-----ctgaaaaaaacg-agcaa
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig24  358442 52 +  1162296 acgacgaaaa---cgcgcatcttcttttc-----tgttcgaaa-----ctgaaaaaggaa-agatt
i caeRem4.Crem_Contig24 I 10 C 0
s caeSp111.Scaffold514   137196 44 -   141934 acgat---------tcacatcttttttct-------tcagaaa-----ctgaaaaaagat-gaatt
i caeSp111.Scaffold514  I 42 C 0
s caePb3.Scfld02_62      486293 45 -   783054 TCGAC---------TCACATCTTCTTTCt------gttcgaaa-----ctgaaaaaaaag-agatt
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold17966   84901 56 -   140921 ---------AGTTTACATGTAGTCTGGTTTAGTTTGTTGGAAGaagatcagaaaaaaaaa-ctatt
i caeJap4.Scaffold17966 C 0 I 181

a score=-7999.000000
s ce10.chrX             1294972 82 + 17718866 TGAAAACTGAAGAAATAGTCGGAGATGGCTCACATCCTCCTTCTCTCCTCCCACGCCCCTTTACAAAAACCTTTTGCTGTTT
s cb4.chrX                93400 55 + 21540570 cgaaaaccaaagaaag--------------ctatttcccattttcataC------------TACAACGATATTGT-CCTGTT
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig24  358494 64 +  1162296 CGAAGACTAAAGAAAAGCTC------ATCTCAAATTCACTTCGTcatgg------------aaaaaaaacctttcGCTTGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137240 21 -   141934 gaaaaaacaa-------------------tcgCA---------------------------GAAGAA---------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      486338 76 -   783054 tgaaaactaagaaaaagcCT------ATCTCACATTCACTTTGTAAGGAATCtccttcaatgaaaaaaaccttgttcctctt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   84957 181 -   140921 I

a score=-11148.000000
s ce10.chrX             1295054 85 + 17718866 AGTATGTTCCATGGGATGGAAACCTGTTGGTTTA-TCAGTTAAGCGTTCGCACTGACCAATT-----GTTTGTAT-------TTATTGATATCA---CCGT
s caeRem4.Crem_Contig24  358558 72 +  1162296 AGAAT----CATCGTAT---------TTCtcttgttcactt-----ttttcaatgatcaAGTGATGttcttctga-------ttttgacttttattc----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137261 44 -   141934 ----------------------------CTCACG-TCGTTT-----TCTACAattgtt---------tcttcaat-------tttccaattcct-------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      486414 55 -   783054 ---------------ct---------ttcttttg-tcTCTT-----TCTTGACTCATC---------TATTCTATCTAAACATTTTAGGTTCCC-------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   84957 181 -   140921 I
e cb4.chrX                93455 78 + 21540570 I

a score=-18083.000000
s ce10.chrX             1295139 227 + 17718866 GTTTAATTCTCA-AATAAAACTGCCCTCCTCCTTTTTTTTTTAATCT------TTT-----------ATTTTTCA--AA------ACTCTTTTTCCTACTTATTATTCCCTT--------AATAAAC-CAATATGC---------ATATCATTTTTCAGCAATTAGCCTACATCAAAATGTTGGCTTACGGGTCTGATCCGAACGCCGAAGACCTCT-------ATATCACAATGACACCGTCCGTCTC-----------AACAGAAAACGACACCACAGTCTGGGCGA
s cb4.chrX                93533 179 + 21540570 gttt-------------aaatttc------------aattataATTC--------C-----------ACATACTG--AATAGGCTAATCTGGtttttttCGATGCCCTGAATAAATCTTCTGTCATCATacgatat---------------tttttcagaattc-------ataaaaatgCTATCGTACGGGTCGAATATCGACACGAATGATTTCT----------------------------ATTT-----------TAATCAAAACGAAACAA---TGTCAACTA
i cb4.chrX              I 78 C 0
s caeRem4.Crem_Contig24  358630 229 +  1162296 -ttttattcccc-cagcagatttc--------------ttcttgttcttttctttc-----------atcCACAG--ATCTTGAAACTTTTGTTCTTTTAAAt-tcttgcat-----ttttttcatc-cCCGATTTTGAAAACCCTTACTATTTTTCAGCGGCCA------ACAAAAATGTTAGCCTACGGGTCTGAACTTGACACCGAAGGCCTGTTCATACAAAC---------------CAGATTTGTAAACgaaaatattccaaatgaAACAT---TCCTGGCCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137305 181 -   141934 GTTTAACTCATG-TAAAATATATC------------AACTTTAATAC--------------------ATGCTCCG--AATTGTATAGTCTTTTTTCACCTGATTCCGcacat--------ttcaatt-caatattt-------------catttttcagaagag-------------atgTTAGCTTACGGGTCTGAACTCAACACCGAAGacttaa-------aaa---------------ttgatta-----------caataaaaatgaatc-----ttTTCACCA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      486469 190 -   783054 AGCTTGTTCTTATTcgaattcatc-----------tttttttaataC--------CAGACCACACGAATTCCTCATCAATTATTTATGCTTGCTATGCtccatttttctaat--------tctaaCT-AA----------------------TTTCCAGCAGCT-------------ATGGTAGCTTACGGGTTTGAACAGAACACCGACGACCTGT-------ATG---------------CGAGCTC-----------TGACGAAAACAAAACCA---TCTTCACTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   84957 181 -   140921 I

a score=85024.000000
s ce10.chrX             1295366 141 + 17718866 CAGAGGAGCCGGC---GGC-A----------ATTGTGTGGAGACATCCCCTATTGGCAATTGCATTGTTTTCCATTTGTCTGCTCACAGTTGCTGGAAATTGTCTGGTTGTGATTGCAGTGTGTACTAAGAAGTATTTAAGGAATCCCACTGGGT
s cb4.chrX                93712 150 + 21540570 CCGAGTCGCCACCCGAAAA-AT----CACCTATTGCTTGGAGGCATCCACTTTGGGCGATCGCTCTTTTTTCAATATGTTTGTTAACAATTGCTGGGAATTGTCTAGTGGTAATAGCGGTGtgcacaaaaaaatatttaaggAATCCCACAGGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  358859 147 +  1162296 CTGAGAGCCCACC---GAG-GT----CTACAATCGTCTGGAGACATCCGGTTTGGGCCGttgtccttttttcaatttgtctgCTTACCATCGCCGGGAATTGTCTAGTCGTAATTGCGGTTTGCACAAAAAAGTATCTGAGGAATCCGACTGGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137486 140 -   141934 T-------CTACC---AGA-AT----CTTCTATTACCTGGAGGCACCCTGTGTGGGCTATCATACTATTCTCCATATGCTTACTAACTATAGCTGGGAACTGTTTGGTAGTGATCGCAGTCTGCACCAAAAAATATCTCAGAAATCCTACAGGGT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      486659 141 -   783054 C-------CAATG---AAACAG----CCGATATAGTTTGGAGACATCCGGTTTGGGCAATTATCCTGTTTTCAATTTGCCTGCTAACAGTTGCTGGTAATTGTTTAGTTGTGATTGCAGTTTGCACCAAGAAATATTTGAGGAATCCCACtgggt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   85138 141 -   140921 -------------CGGAAG-ATGTGCCGAATATAGTGTGGCGACATCCGTTTCTGGCCGTTGTACTCTTTTCTATTTGCTTGCTCACAGTAGCTGGAAACTGTCTTGTTGTTATTGCTGTTTTCACTAAAAAGTATCTTCGGAATCCCACAGGGT
i caeJap4.Scaffold17966 I 181 I 829

a score=-396.000000
s ce10.chrX             1295507 4 + 17718866 GAGT
s cb4.chrX                93862 4 + 21540570 ACTC
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  359006 4 +  1162296 GAGT
i caeRem4.Crem_Contig24 C 0 I 81
s caeSp111.Scaffold514   137626 4 -   141934 GAGC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      486800 4 -   783054 ttgt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   85279 829 -   140921 I

a score=1092.000000
s ce10.chrX             1295511 2 + 17718866 TT
s cb4.chrX                93868 2 + 21540570 TT
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold514   137630 2 -   141934 TT
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      486804 2 -   783054 tt
i caePb3.Scfld02_62     C 0 I 38
e caeJap4.Scaffold17966   85279 829 -   140921 I
e caeRem4.Crem_Contig24  359010 81 +  1162296 I

a score=238.000000
s ce10.chrX             1295513 5 + 17718866 GGCAC
s cb4.chrX                93870 5 + 21540570 GACGC
i cb4.chrX              C 0 I 1
e caePb3.Scfld02_62      486806 38 -   783054 I
e caeJap4.Scaffold17966   85279 829 -   140921 I
e caeSp111.Scaffold514   137632 28 -   141934 I
e caeRem4.Crem_Contig24  359010 81 +  1162296 I

a score=0.000000
s ce10.chrX             1295518 607 + 17718866  
e caePb3.Scfld02_62      486806  38 -   783054 I
e caeJap4.Scaffold17966   85279 829 -   140921 I
e cb4.chrX                93875   1 + 21540570 I
e caeSp111.Scaffold514   137632  28 -   141934 I
e caeRem4.Crem_Contig24  359010  81 +  1162296 I

a score=68.000000
s ce10.chrX             1296125 3 + 17718866 TTT
s cb4.chrX                93876 3 + 21540570 TTG
i cb4.chrX              I 1 C 0
e caePb3.Scfld02_62      486806 38 -   783054 I
e caeJap4.Scaffold17966   85279 829 -   140921 I
e caeSp111.Scaffold514   137632 28 -   141934 I
e caeRem4.Crem_Contig24  359010 81 +  1162296 I

a score=1962.000000
s ce10.chrX             1296128 14 + 17718866 AATATCAAACTTAA
s cb4.chrX                93879 14 + 21540570 AATATTAAAAATGA
i cb4.chrX              C 0 I 8
s caeJap4.Scaffold17966   86108 14 -   140921 AATATAAAAGCTGA
i caeJap4.Scaffold17966 I 829 C 0
e caePb3.Scfld02_62      486806 38 -   783054 I
e caeSp111.Scaffold514   137632 28 -   141934 I
e caeRem4.Crem_Contig24  359010 81 +  1162296 I

a score=180.000000
s ce10.chrX             1296142 1 + 17718866 A
s cb4.chrX                93901 1 + 21540570 G
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig24  359091 1 +  1162296 A
i caeRem4.Crem_Contig24 I 81 C 0
s caeJap4.Scaffold17966   86122 1 -   140921 A
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      486806 38 -   783054 I
e caeSp111.Scaffold514   137632 28 -   141934 I

a score=171667.000000
s ce10.chrX             1296143 205 + 17718866 TTTCAGGTACCTAATTATCTCATTGGCAATAGCAGATCTCATAGTAGGCGTGATAGTGATGCCTATGAATTCATTATTTGAAATTGCAAATCACACGTGGCTTTTTGGCCTGATGATGTGTGATGTGTTCCACGCGATGGACATTCTTGCGTCGACAGCTTCGATATGGAACCTATGCGTCATTAGTCTAGACAGGTATGTGAAA
s cb4.chrX                93902 205 + 21540570 TTTCAGATATCTTATTATCTCTTTGGCGATTGCAGACCTCATAGTGGGCGTTATTGTAATGCCGATGAATTCCTTGTTCGAAATGGCAAATCATTCCTGGTTATTTGGTCTTCCAATGTGTGACGTTTTTCATGCAATGGATATACTTGCGTCCACTGCTTCTATTTGGAATCTTTGTGTTATTAGTTTGGACAGGTTTgtttga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359092 205 +  1162296 TTTCAGATATCTGATCATCTCACTTGCAATAGCAGATCTCATTGTCGGTGTGATAGTAATGCCAATGAACTCACTATTTGAGATGGCAAACCATTCCTGGTTATTTGGCCTAGCAATGTGTGATGTTTTTCATGCTATGGATATTCTTGCTTCCACAGCTTCCATATGGAATCTGTGTGTTATTAGTTTAGACAGGTTggttttt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   137660 205 -   141934 TTTCAGATACCTTATTATATCATTAGCCATAGCCGATTTAATAGTAGGAGTTATTGTAATGCCAATGAATTCATTGTTTGAAATGGCAAACCATTCATGGTTGTTCGGTCTTCCAATGTGCGACATATTTCATGCAATGGATATTCTTGCATCCACAGCTTCTATTTGGAATCTTTGTGTCATCAGCTTAGACAGGTGAGCAATA
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      486844 205 -   783054 tttcagatacttgATCATTTCTCTGGCAATAGCGGATCTTGTTGTCGGAGTGATAGTGATGCCCATGAACTCAATATTTGAAATGGCTAATCACTCCTGGCTGTTTGGTCTTCCAATGTGTGATATATTTCATGCAATGGACATTTTTGCTTCCACAGCTTCCATATGGAATCTCTGTGTTATTAGCTTAGACAGGTATGTTTAA
i caePb3.Scfld02_62     I 38 I 100
s caeJap4.Scaffold17966   86123 202 -   140921 CTTTAGGTACTTGATCATTTCGCTAGCTATTGCCGACTTAGTGGTTGGTGTGCTAGTAATGCCGTTAAATTCCTTATTTGAAATGGCCAATCACACGTGGCTCTTTGGATTAATGATGTGTGACGTGTTTCACGCTTTGGATATATTTGCATCAACGGCATCAATATGGAACCTTTGTGTGATTAGCCTGGACAGGTTCGCA---
i caeJap4.Scaffold17966 C 0 C 0

a score=-29280.000000
s ce10.chrX             1296348 105 + 17718866 ATTCCAAAATGTTAAAAAAATTTGATGAAGCTTTTTTGAAA--------ACCAAAA---ACTCTGAACTTTGAACCTTTTTCTTGACTTTTTCTTCTCT-------TTTGTTCAAATCTAA--TT
s cb4.chrX                94107  43 + 21540570 ----------aacgaaaaaaa-------------atagata--------gaCAGAA--------TAGTGTT---------------------------------------CAAGATCAATA----
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  359297  67 +  1162296 ----------gtcgaaaaaaat------ttctctatttttc--------aacatgactcatctctagtttt-----------------------ttttt-------tttgcataatcCGCA----
i caeRem4.Crem_Contig24 C 0 I 98
s caeSp111.Scaffold514   137865  96 -   141934 ----------ATCTGTAGAAGTCGATAACTCACAATTGATAATTgaactatcaaaaattacTCTTGGTTTCCaa----------aacttctattttttt-------tttagataaaCCTTATT--
i caeSp111.Scaffold514  C 0 I 8
s caeJap4.Scaffold17966   86325  22 -   140921 ---------------------------------------------------------------------------------------------TTGTTTGAGTACGTTCGTTTAA----------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      487049 100 -   783054 I

a score=0.000000
s ce10.chrX             1296453 7 + 17718866 TCTTCCC
e caePb3.Scfld02_62      487049 100 -   783054 I
e caeJap4.Scaffold17966   86347 0 -   140921 C
e cb4.chrX                94150 4 + 21540570 I
e caeSp111.Scaffold514   137961 8 -   141934 I
e caeRem4.Crem_Contig24  359364 98 +  1162296 I

a score=-24567.000000
s ce10.chrX             1296460 85 + 17718866 CCCCCCCCTCTAC----------------------TACTACTTTTTTTGTGAGTCA--------TTCAATTTCAAACTGTGCTTTCTTTGACCTTGCACAAACTTTCCGTACTTT
s cb4.chrX                94154 33 + 21540570 --------TTCAG----------------------TTTTAAACTTATCATAAACAG--------TTTGATT--------------------------------------------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold514   137969 93 -   141934 CTCGACTTTTCAACCAAACTATCAGAAATATTTCGTTATAAACTATTCGTAAaacaacactttttttgttcgtaaaaagtttt----------------aaac------tgtttt
i caeSp111.Scaffold514  I 8 I 7
s caePb3.Scfld02_62      487149 56 -   783054 ATCTCTTTTCTAA-----------------------TGCTAACTTTTGCCTGAATA--------TCCGTTctcaaag----------------------aaaa------tatttt
i caePb3.Scfld02_62     I 100 I 1
s caeJap4.Scaffold17966   86347  8 -   140921 -CCGCTATT----------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  359364 98 +  1162296 I

a score=148924.000000
s ce10.chrX             1296545 165 + 17718866 TTTCAGATACATGGCCGGTCAGGACCCAATTGGCTATAGAGATAAAGTCTCGAAAAGGAGGATCTTAATGGCTATTCTGAGTGTATGGGTGTTGTCTGCAATTCTATCGTTTCCTGGAATTATTTGGTGGCGGACTAGTTCTCCGCATTTGTATGAAGATCAGGT
s cb4.chrX                94187 165 + 21540570 TTGCAGATACATGGCTGGTCAAGATCCCATTGGTTACAGAGACAAAGTATCAAAGAGGAGGATTTTGATTGCCATCCTCTGTGTCTGGGTGTTATCTGCCATTTTATCTTTCCCCGGGATCATATGGTGGCGAACGAGTTCTCCTCATTTGTATGAGAATCCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359462 165 +  1162296 TTTAAGGTACATGGCTGGCCAAGATCCGATTGGCTACCGAGATAAAGTTTCCAAGAGACGAATATTAATGGCTATTCTTAGTGTTTGGGTTCTATCAGCCATTTTATCGTTCCCTGGAATCATCTGGTGGCGGACGAGCTCTCCACATTTATATGAAGACCAGGT
i caeRem4.Crem_Contig24 I 98 C 0
s caeSp111.Scaffold514   138069 165 -   141934 tttaaGATATATGGCGGGTCAAGATCCGATCGGCTACAGAGACAAAGTATCGAAAAGGCGAATATTAATGGCTATCTTGAGCGTATGGGTTCTGTCGGCTATTTTGTCGTTTCCCGGAATCATTTGGTGGAGGACCAGTTCTCCGCACTTGTATAAAGACCAAGT
i caeSp111.Scaffold514  I 7 C 0
s caePb3.Scfld02_62      487206 165 -   783054 tatcagatATATGGCTGGCCAAGACCCAATAGGATACAGAGATAAAGTGTCCAAAAGACGAATACTAATTGCAATACTTTGTGTTTGGGTGTTGTCTGCAATTTTATCGTTTCCTGGAATCATATGGTGGAGGACCAGCTCGCCGCATTTGTATGAAGAtgcggt
i caePb3.Scfld02_62     I 1 I 34
s caeJap4.Scaffold17966   86355 165 -   140921 TTTAAGATACATGGCCGGTCAAGACCCTATTGGATACCGagataaagtttcaaaacgaaGAATCCTAGTTGCTATTTTCTGTGTTTGGATACTATCTGCCATTTTATCGTTTCCTGGTATCATTTGGTGGCGGTTAAGTTCACCGCATTTGTACGAAAATCGAGT
i caeJap4.Scaffold17966 C 0 C 0

a score=54.000000
s ce10.chrX             1296710 1 + 17718866 A
s cb4.chrX                94352 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359627 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   138234 1 -   141934 A
i caeSp111.Scaffold514  C 0 I 30
s caeJap4.Scaffold17966   86520 1 -   140921 A
i caeJap4.Scaffold17966 C 0 I 44
e caePb3.Scfld02_62      487371 34 -   783054 I

a score=145.000000
s ce10.chrX             1296711 2 + 17718866 TG
s cb4.chrX                94353 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359628 2 +  1162296 TG
i caeRem4.Crem_Contig24 C 0 I 239
e caePb3.Scfld02_62      487371 34 -   783054 I
e caeJap4.Scaffold17966   86521 44 -   140921 I
e caeSp111.Scaffold514   138235 30 -   141934 I

a score=91.000000
s ce10.chrX             1296713 1 + 17718866 A
s cb4.chrX                94355 1 + 21540570 A
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      487371 34 -   783054 I
e caeJap4.Scaffold17966   86521 44 -   140921 I
e caeSp111.Scaffold514   138235 30 -   141934 I
e caeRem4.Crem_Contig24  359630 239 +  1162296 I

a score=0.000000
s ce10.chrX             1296714 340 + 17718866 CAATTGGCACTGGCCAAACGGGACTTGTCTAAAATTGGCACTGTCATAGACTATCATCTCACTAATTAGCGCCACAAAATTGACAATTAAGTTGATTAGATAGGGGGATGGTGGTTGGACAAAATTGGTCTGCACTAGAACGTGCCTTGCACTGACCAAACTTAGAAATCGCACTGACCAAACTTAGAAATCGCACTGACCAAACTTAGAAATCGCACTGACCAAACTTAGAAATCGCACTGACGAAACTTATAAATCGCACTGACCAAACTTATAAGTCGCACTGACCAAAAATTCAGAGTTTGAACTGATAAAAATTCAGAGTTTGAACTGATTAAAT
e caePb3.Scfld02_62      487371  34 -   783054 I
e caeJap4.Scaffold17966   86521  44 -   140921 I
e cb4.chrX                94356   0 + 21540570 C
e caeSp111.Scaffold514   138235  30 -   141934 I
e caeRem4.Crem_Contig24  359630 239 +  1162296 I

a score=508.000000
s ce10.chrX             1297054 26 + 17718866 GCACTTTTAAAATTAAAGAAAAAAAC
s cb4.chrX                94356 24 + 21540570 GAACTTtcagga--aaaagaaaattc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      487371 34 -   783054 I
e caeJap4.Scaffold17966   86521 44 -   140921 I
e caeSp111.Scaffold514   138235 30 -   141934 I
e caeRem4.Crem_Contig24  359630 239 +  1162296 I

a score=546.000000
s ce10.chrX             1297080 1 + 17718866 A
s cb4.chrX                94380 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359869 1 +  1162296 a
i caeRem4.Crem_Contig24 I 239 C 0
s caePb3.Scfld02_62      487405 1 -   783054 a
i caePb3.Scfld02_62     I 34 I 1
e caeJap4.Scaffold17966   86521 44 -   140921 I
e caeSp111.Scaffold514   138235 30 -   141934 I

a score=-1915.000000
s ce10.chrX             1297081 11 + 17718866 --TTTTTCTTTT---------T
s cb4.chrX                94381 11 + 21540570 agttttgatG-----------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  359870 11 +  1162296 ttttttcaat-----------t
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   138265 20 -   141934 --tttttgttttattcgaATAT
i caeSp111.Scaffold514  I 30 C 0
s caePb3.Scfld02_62      487407 13 -   783054 --ttttcgcGTTAT-------T
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold17966   86521 44 -   140921 I

a score=168345.000000
s ce10.chrX             1297092 170 + 17718866 TCTAGTCACAATGTCTATTCACGGACAGCAAAATGTATGTGAGCTTCTCTTCATTAGTTTCGTTCTACATCCCGCTCTTCCTCATTCTCTTCGCATATGGAAAGGTCTACATAATTGCGACGCGACATTCAAAAGGCATGCGGATGGGTATCAAAACAGTCAGCGTGAGT
s cb4.chrX                94392 170 + 21540570 TTTAGTCACAATGTCTGTTCACGGACAGCAAAATGTATGTCAGCTTCTCTTCATTGGTATCTTTTTATATCCCATTGTGCTTAATTCTCTTTGCGTACGGAAAAGTTTACATAATTGCAACACGACATTCAAAAGGAATGCGAATGGGTATCAAAACCGTTAGCGTAAGT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig24  359881 170 +  1162296 ttcagtcacaaTGCTTGTTCACCGATAGCAAAATGTATGTGAGTTTCTCGTCGCTGGTCTCATTTTATATTCCACTCTGCCTTATTCTTTTTGCATATGGAAAAGTTTATATAATTGCAACACGTCATTCAAAAGGAATGCGGATGGGCATCAAAACAGTTAGCGTAAGC
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold514   138285 170 -   141934 TTCAGTCACAATGCTTGTTCACCGATAGCAAAATGTATGTGAGCTTTTCGTCACTAGTCTCATTTTATATTCCCCTATGTCTCATTCTTTATGCATATGGCAAAGTTTATATAATTGCAACACGTCATTCGAAAGGGATGAGAATGGGCATCAAAACAGTTAGTGTAAGT
i caeSp111.Scaffold514  C 0 I 39
s caePb3.Scfld02_62      487420 170 -   783054 TTCAGTCGCAATGCTTGTTCACGGACAGCAAAATGTATGTGAGCTTTTCCTCGTTGGTCTCATTTTATATTCCTCTATGCCTCATTCTTTTTGCGTATGGGAAAGTTTATATAATTGCAACACGTCATTCAAAGGGAATGAGGATGGGCATCAAAACAGTTAGCGTGAGT
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966   86565 170 -   140921 TTCAGTCACTTTGTCTATTCACCGACAATCGGATGTACGTTGGTTTTTCGTCACTTGTTTCATTTTATATTCCATTATGTTTGATTCTCTTTGCGTATGGAAAAGTTTACATTATTGCGACGCGGCACTCAAAGGGAATGCGATTAGGAATTAAGACAGTTAGTGTAAGA
i caeJap4.Scaffold17966 I 44 C 0

a score=-12217.000000
s ce10.chrX             1297262 35 + 17718866 ------------------------AAATA----GGAAAAT---ATTTCAG---TTTTATAAGTCGTG-------TT
s cb4.chrX                94567 22 + 21540570 ------------------------GA-------GGCACAT---ATCTCAa---atgt-----------------tt
i cb4.chrX              I 5 I 4
s caeRem4.Crem_Contig24  360056 34 +  1162296 ------------------------CAatt----aactttt---attttta---gttt-caacTCGAG-------TT
i caeRem4.Crem_Contig24 I 5 I 4
s caePb3.Scfld02_62      487591 34 -   783054 --------------------------------------AT---ATTTTTAGATGTTC-GAACTTtaggaaaaattt
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966   86735 65 -   140921 GAACATGGAATAACTTAACTTCCAGAATTACCGGGgatatttgattttta---tttt-taatacaTG-------AT
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold514   138455 39 -   141934 I

a score=154382.000000
s ce10.chrX             1297297 179 + 17718866 TTGTTCAGATCAAAAAACGGAATGGAAAAAAATCCAACACGGAGACAGAGAGCATCTTGTCCAGTGAGAATGAGCCAACATTGCGGATTCATTTCGGGCGGGGGAAGCAGTCGAGTTCCAGCTTAAGAAATAGCAGGTTTCATGCCAGAGAGTCCACGAGGTTGCTTTTAAAGCAGGTA
s cb4.chrX                94593 179 + 21540570 aatttcagataaaaaaaaggaatggaaaaaaatcaaatactGAAACTGAAAGTATATTGTCTAGTGAAAACGAACCCACTTTGCGAATTCACTTTGGCAGGGGGAAGCAATCAAGTTCGAGTTTAAGGAATAGTAGACTTCACACTCGCGAGTCGACGAGATTGTTATTGAAGCAGGTG
i cb4.chrX              I 4 I 111
s caeRem4.Crem_Contig24  360094 179 +  1162296 gttttcagataaaaaagaggaatggGAAAAAGTCAAACACGGAAACAGAAAGTATATTGTCTAGCGAGAATGAACCCACTTTGCGAATTCACTTTGGAAGAGGGAAGCAATCAAGTTCGAGTTTACGGAATAGTCGACTTCATGCCAGAGAGTCGACCAGATTGCTGTTGAAGCAGGTA
i caeRem4.Crem_Contig24 I 4 I 964
s caeSp111.Scaffold514   138494 177 -   141934 ATTt--agataaaaaagagaaatggaaaaaagtcaaataCGGAAACTGAGAGTATATTGTCTAGCGAAAATGAACCTACTTTGCGAATTCACTTTGGGAGAGGGAAGCAATCAAGTTCGAGTTTACGGAATAGTCGACTTCATGCCAGAGAATCGTCCAGATTGCTGTTGAAGCAGgta
i caeSp111.Scaffold514  I 39 C 0
s caePb3.Scfld02_62      487625 179 -   783054 atttccaggTGaaaaaaaggcatggaaaaaaatcaaacacaGAGACCGAAAGTATATTGTCTAGCGAAAATGAACCCACTTTACGAATTCACTTTGGGAGAGGAAAGCAATCAAGTTCAAGTTTGCGGAATGGCCGACTCCATGCCAGGGAATCCACAAGATTGCTGTTAAAGCAGGTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   86800 179 -   140921 TTTTCTAGATAAGACGAGCCCGCGGGAAGAAATCAAACACTGAGACGGAAAGCATACTATCGAGTGAAAATGAACCAGCGTTACGGGTTCATTTTGGTAGAAGGAACCAAACCCGATCTAGTTTGCATGCTCATAGTCTTCACTCAAGAGAGTCAACAAGACTTTTGCTAAAGCAGGTA
i caeJap4.Scaffold17966 C 0 I 72

a score=1446.000000
s ce10.chrX             1297476 3 + 17718866 TAA
s cb4.chrX                94883 3 + 21540570 aaa
i cb4.chrX              I 111 C 0
s caeRem4.Crem_Contig24  361237 3 +  1162296 taa
i caeRem4.Crem_Contig24 I 964 C 0
s caeSp111.Scaffold514   138671 3 -   141934 aaa
i caeSp111.Scaffold514  C 0 I 14
s caePb3.Scfld02_62      487804 3 -   783054 AAA
i caePb3.Scfld02_62     C 0 I 1090
e caeJap4.Scaffold17966   86979 72 -   140921 I

a score=-12872.000000
s ce10.chrX             1297479  37 + 17718866 AAACTAC----------------------------------TTTGATTTTTCAGTTTAAATGT--------------------------------------------------------TCAAAAAT
s cb4.chrX                94886 114 + 21540570 aaaaaat---------gatggcGTGGTTCAAGGGATCTAACTATAAACTC----ATTATATATGGAATTTATTTTTGCAATATGGGGCTCACATGCGTATTTCAAGGAATTATGTGGTTATGCGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  361240  25 +  1162296 aaaacat----------------------------------ttcaaattt----actaaacgt----------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   138688  67 -   141934 aaacaaCTCAATGAGAACtggttttctttcgaaacaaaatttgCAAATCA----GTCATAAGT--------------------------------------------------------TAGAGtct
i caeSp111.Scaffold514  I 14 C 0
e caePb3.Scfld02_62      487807 1090 -   783054 I
e caeJap4.Scaffold17966   86979  72 -   140921 I

a score=-14846.000000
s ce10.chrX             1297516 45 + 17718866 TCTAGCGAAATTAGAATTACC-------------------TAGTTAGCATCC-------------------A----CAATGTTTCAG
s cb4.chrX                95000 76 + 21540570 TTTAATTGGTCTATTTTTAACTTATCAAGGACCAACCATGTAAAAAACGTTC-----------tccaaataaaaattaatatcTTTA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig24  361265 25 +  1162296 ----------------------------------------taaaaa------------------tcaaataa----taatttctaga
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514   138755 64 -   141934 taaaatttatttggatttgaa-------------------aaaaaaacatctaAATCAGTGCACACAAACAA----TGATATTgcaa
i caeSp111.Scaffold514  C 0 I 28
s caeJap4.Scaffold17966   87051 52 -   140921 cccacaaaatttagtactacg-------------------tggatttcattt-----------tcgtcgcca----aattatttcg-
i caeJap4.Scaffold17966 I 72 C 0
e caePb3.Scfld02_62      487807 1090 -   783054 I

a score=23580.000000
s ce10.chrX             1297561 61 + 17718866 ------TTGCAGGTATCCTGTAAATCATTAAACGATCGTGGCGAGCACAACAATAATAACACGGTGC
s cb4.chrX                95095 58 + 21540570 ------TTCCAGGTGTCTTGCAAATCATTGAATGATCGGGGAGAG---AGTAATAATAACACCGTTA
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig24  361292 58 +  1162296 ------ttccaGGTCTCCTGCAAGTCCTTAAACGACCGAGGGGAA---AAGAACAACAACAATGTTA
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514   138847 58 -   141934 ------tttcaggTGTCTTGCAAATCTCTTAATGATCGCGGAGAA---AACTACAATAATGCGGCCA
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      488897 58 -   783054 ------tttcaggtttcctGTAAATCTCTCAACGATCGTGGGGAG---AACAACAACAATACTGTCA
i caePb3.Scfld02_62     I 1090 C 0
s caeJap4.Scaffold17966   87103 57 -   140921 tgtaaattcaacgtaaaatg-aaataatttggcgacaaaaatgaa---atccacaa-agtac-----
i caeJap4.Scaffold17966 C 0 I 115

a score=20987.000000
s ce10.chrX             1297622 73 + 17718866 GGCAGCCATTGCTCCGTGGCACAGAAGGTTGCCATTCCGACTCCATTAGTCGTTCCTCGCAACGTAACTTTCG
s cb4.chrX                95153 67 + 21540570 GACAACCGTTGCTGCGGAACACGGAAAATAATCACGCTGACAACT---ACCGTTCT---CAGCGAAACTTCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  361350 70 +  1162296 GGCAGCCTCTACTTCGCGGCACTGATAACAATCAGTCGTGTGAATCAAATCGGTCA---CAACGGAACTTCCG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   138905 67 -   141934 GACAACCATTGTTACGAGGCACAGAGCACAATCATTCCGATAATA---ATCGGTCT---CAGAGGAATTTTCG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      488955 67 -   783054 GACAGCCATTGTTACGTGGCACAGAAAGCATCCATTCGGAGAACA---ATCGATCT---CAGAGGCATTTCAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   87160 115 -   140921 I

a score=-32560.000000
s ce10.chrX             1297695 159 + 17718866 -----TGGCAGGAATG----TTACGATCGGGAGTAA---CTGCTCTTCGACTCTTCTGCAAGTTGATCAGGTAA--------------------ACATAGCGTCTGACTTC--------TTACTGTTCCAGAATACTGTAACAGGGT-----------------------------------TAGTTTTCCTGCCAAA------------------AACAAAAAAAAATCCA----TAAAACGTGTCAGAAACCAT
s cb4.chrX                95220 196 + 21540570 -----AAGTCGGAACG----TTACAATCGGAAGTAA---TTGTTCATCGACATTACTTCAAGTGGAACAGGTAA--------------------AATACATCCTGAATCGT--------TTACATTTCTTGAGTGATCCATCCTTGCAATGAACCCTAGCgccaattttcaacaaattgcTCATGTTTTTGTAAAAACCT----------------TCTAACATGAGACAcc----taaagtttcagaaaagagTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  361420  83 +  1162296 -----AGGTCGGAATG----TTACAATTGGTAGCAA---TTGTTCATCAACATTATTACAAGTTGAACAGGTAA---------------------------------------------------TTCTTG---------------------------------------------------ATGGTTTTGGAATAA-----------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   138972 116 -   141934 -----AGGGAGAAACG----TCACCATTGGAAGTAA---CTGCTCGTCAACATTGCTACAGGTAGAACAGGTA----------------------------------------------------TGATGTGGTGAT---------------------------------------------TTGTTTT------AACTTCT--------------ACTAGAACAGTATATT-----------TTTAaacactctt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      489022 169 -   783054 -----AGGGAGAAATG----TTACTATTGGGAGTAA---CTGCTCGTCAACTTTGTTGCAGGTAGATCAGGTAA---------------------------------------------TTTGTTAGATTGGGTCATAAGTTAATAGATTTTCTGTTTGC----------------------TTGTTTTGGG---AATTTATGGCTCAGTCTAATAACTAG-ATAGAACGTT----TCCTCAATTTTAGTACCCTT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   87275 225 -   140921 TGGAGAGAACGGAGTGAGCAAGACAATTTGCGACACAGtttgaacattaaatttttttcaggt--atCATGCAAATCCCTGAATGATCGCGGGGACCACGCCTGCAACTTCACCACACGCCAGTCTCCTTTAAGGACAACAGAATCTAATAGCCCCAAT-----------------------TCGGTTT------ACGGTTCGCATCCTTTTAGGAAACGAAATGTGATCCTAAGCTCTAATGCCTCAACAAACAT
i caeJap4.Scaffold17966 I 115 I 61

a score=-12186.000000
s ce10.chrX             1297854 50 + 17718866 TCACTCAG------TCCTCCTCTAATAATGTAAACATTCCATTAAAAATCCCCCAA
s cb4.chrX                95416 22 + 21540570 ---CTTAT------TCATAActcaatt-------------------------taaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  361503 15 +  1162296 ----------------ATAACAcatta-------------------------gaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   139088 30 -   141934 ---tttttgaatgatcttTTTCCAATGTT-----------------------TTAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      489191 52 -   783054 CAACTTCTAAACTCTTTctacccaattttttgattgaaccgtctaaaa----ttat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   87500 61 -   140921 I

a score=193508.000000
s ce10.chrX             1297904 231 + 17718866 ATTTTCCAGCCGGATCGTATGTCGCTCTCCTCCAACTCCCAAATGGTGATGACATCTCCCTTATCAACGCGTCGAAAATTGAATGTTCGAGAAAAATCGCGCCAAATGATGCGCTACGTCCACGAGCAACGTGCAGCTCGGACACTTTCCATTGTGGTCGGAGCATTTATTCTCTGCTGGACACCATTTTTCGTGTTCACTCCGCTCACCGCGTTCTGTGAAAGTGTAAGT
s cb4.chrX                95438 231 + 21540570 aactttcagcCGGATCGCATGTCTCTCTCATCAGCATCCCAAGTCGTGATGGCCTCTCCGCTATCAACTCGTCGGAAACTGAATGTGCGAGAAAAATCCCGACAAATGATGCGTTATGTGCACGAACAACGTGCTGCGCGAACTCTTTCAATTGTCGTGGGTGCATTCATTTTGTGCTGGACgccatttttcgttttctctccATTCACAGCTTTTTGTGAAAGCGTAAGT
i cb4.chrX              C 0 I 1582
s caeRem4.Crem_Contig24  361518 231 +  1162296 atttttcagccagacCGAATGTCCCTGTCATCCGCCTCCCAGATAGTGATGACATCCCCATTATCCACTCGTCGAAAACTGAATGTTCGAGAGAAATCAAGACAAATGATGAGATATGTACATGAACAACGAGCTGCACGAACTCTCTCAATTGTTGTTGGAGCGTTTATCTTGTGTTGGACTCCATTCTTTGCGTTTTCTCCATTAACTGCTTTCTGTGAAAGTGTAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   139118 231 -   141934 TGTTTGCAGCCAGATCGAATGTCGCTTTCTTCAGCTTCCCAAATTGTAATGACATCCCCATTATCAACCCGCCGAAAGCTGAATGTTCGAGAGAAATCCCGACAGATGATGCGTTATGTACATGAACAACGAGCTGCACGAACTCTTTCAATTGTTGTGGGAGCTTTCATACTTTGTTGGACTCCctttttcgcattttctCCGTTGACCGCTTTTTGCGACAGTGTAGGT
i caeSp111.Scaffold514  C 0 N 0
s caePb3.Scfld02_62      489243 230 -   783054 tattttcagcccGATCGCATGTCCCTCTCTTCTGCATCACAGATAGTCATGACTTCCCCATTATCTACTCGCAGGAAACTCAATGTTCGAGAGAAATCTCGACAAATGATGCGTTATGTACATGAGCAGCGTGCCGCTCGAACTCTTTCAATTGTGGTTGGAGCATTCATATTGTGCTGGAcaccgttttttgttttctctccaTTCACTGCATTTTGTGAAAGTGTGAG-
i caePb3.Scfld02_62     C 0 I 158
s caeJap4.Scaffold17966   87561 231 -   140921 aattttcagccaaatcaaCTATCATCATCCTGTTCTTCTAAAATCAACATTACCTCTCCAACACCTGCACGTCGAAAATTAAACGTTCGGGAAAAATCTCGCCAAATGATGCGATATGTACATGAGCAAAGAGCCGCACGAACTCTATCAATCGTCGTTGGCGCATTTATTTTGTGTTGGACtccatttttcctcttttcccCATTGACAGCATTTTGTGAAAACGTTGGT
i caeJap4.Scaffold17966 I 61 C 0

a score=-754.000000
s ce10.chrX             1298135 13 + 17718866 GTAGGATTTGATG
s caeJap4.Scaffold17966   87792  3 -   140921 TCA----------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      489473 158 -   783054 I
e cb4.chrX                95669 1582 + 21540570 I
e caeRem4.Crem_Contig24  361749  0 +  1162296 C

a score=-13192.000000
s ce10.chrX             1298148 96 + 17718866 ACCCGCTAGATGTCGGGCATGCAAATTTATGTTTTGGTAAAAAATTTGAACGGTATTCTAGTGAACGAGAGTTTTTAGTTTTTGAGGGGAAGGCGC
s caeRem4.Crem_Contig24  361749 13 +  1162296 ---------------------------------TGTGCAGGAA--------------------------------------------------CAC
i caeRem4.Crem_Contig24 C 0 I 25
s caeSp111.Scaffold548      350 46 +    67506 -------------CGGGAGTG------------Tgggcaaaaaaaatga----------aatgattaaGAA-----AGTTTTT----------CAC
i caeSp111.Scaffold548  N 0 I 20
s caeJap4.Scaffold17966   87795 24 -   140921 -----------------CATTAACGTCTACGTCTTGTTAGC-------------------------------------------------------
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      489473 158 -   783054 I
e cb4.chrX                95669 1582 + 21540570 I

a score=0.000000
s ce10.chrX             1298244 27 + 17718866 CTGGTGAACTTTCCGGTTACTTGCAAC
e caePb3.Scfld02_62      489473 158 -   783054 I
e caeJap4.Scaffold17966   87819  0 -   140921 C
e cb4.chrX                95669 1582 + 21540570 I
e caeSp111.Scaffold548      396 20 +    67506 I
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=-2050.000000
s ce10.chrX             1298271 17 + 17718866 --TTTTTGAAAAATTTCTG
s caeSp111.Scaffold548      416  4 +    67506 ---tttt------------
i caeSp111.Scaffold548  I 20 C 0
s caePb3.Scfld02_62      489631 17 -   783054 --tttttgaaaattagccC
i caePb3.Scfld02_62     I 158 C 0
s caeJap4.Scaffold17966   87819  8 -   140921 AATTTCTG-----------
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                95669 1582 + 21540570 I
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=-939.000000
s ce10.chrX             1298288  7 + 17718866 AAAAATG---------------------------
s caePb3.Scfld02_62      489648 34 -   783054 AGGAATATTGTGCCTACTGTAGTTGTGAATAGTG
i caePb3.Scfld02_62     C 0 I 140
e caeJap4.Scaffold17966   87827  0 -   140921 C
e cb4.chrX                95669 1582 + 21540570 I
e caeSp111.Scaffold548      420  0 +    67506 C
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=-1683.000000
s ce10.chrX             1298295 83 + 17718866 CTTTTATCAGAAATTGACAAAGCCCCTACTATGATAAAACTCGACTCACCATTGCTCCAAAAACCAAAAAAAAGCCCACAAAT
s caeSp111.Scaffold548      420 15 +    67506 --------------------------------------------ctcac----------------agaaaaaagt--------
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      489682 140 -   783054 I
e caeJap4.Scaffold17966   87827  0 -   140921 C
e cb4.chrX                95669 1582 + 21540570 I
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=0.000000
s ce10.chrX             1298378 20 + 17718866 AGCCGCGGCTAATTAAATTT
e caePb3.Scfld02_62      489682 140 -   783054 I
e caeJap4.Scaffold17966   87827  0 -   140921 C
e cb4.chrX                95669 1582 + 21540570 I
e caeSp111.Scaffold548      435  0 +    67506 C
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=-62.000000
s ce10.chrX             1298398 2 + 17718866 CC
s caeJap4.Scaffold17966   87827 2 -   140921 TT
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      489682 140 -   783054 I
e cb4.chrX                95669 1582 + 21540570 I
e caeSp111.Scaffold548      435 0 +    67506 C
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=38.000000
s ce10.chrX             1298400 1 + 17718866 G
s caePb3.Scfld02_62      489822 1 -   783054 A
i caePb3.Scfld02_62     I 140 C 0
s caeJap4.Scaffold17966   87829 1 -   140921 G
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX                95669 1582 + 21540570 I
e caeSp111.Scaffold548      435 0 +    67506 C
e caeRem4.Crem_Contig24  361762 25 +  1162296 I

a score=232507.000000
s ce10.chrX             1298401 267 + 17718866 TTTCAGTGTTTCTCCAACAAAGAGACCATCTTCACATTCGTCACATGGGCCGGTCACCTAAACTCAATGCTCAACCCGCTCATCTACTCGCGCTTCTCGCGAGATTTCAGACGGGCATTCAAGCAAATTCTCACGTGTCAACGCCAGCAAAAGGTGAAAACCGCATTTAAAACGCCACTGTCACTCGTGTTCACTCAACTCATCTCGGTCACCCAAATGTGGGAGCAACCGCCGAATACTTCAATTGAATA------Gtttttatttt-gtatt
s cb4.chrX                97251 252 + 21540570 TTTAAGTGTTTCAACAACAAGGAGACCATCTTCACTTTCGTCACTTGGGCAGGCCACCTCAACTCAATGCTCAATCCACTGATCTACTCTCGATTTTCTCGCGATTTCAGAAGAGCTTTCAAGCAGATTCTCACGTGCCAACGGCAGCAGAAAGTCAAGACCGCATTCAAAACACCATTATCACTCGTTTTTACTCAACTCATTTCAGTTACGCAGATGTGGGAACAACCTCAGAACACCTCTATCGAGTA------G----------------
i cb4.chrX              I 1582 C 0
s caeRem4.Crem_Contig24  361787 256 +  1162296 TTTCAGTGCTTCTCCAACAAAGAGACCATCTTCACCATTGTTACATGGGCGGGCCATCTGAACTCGATGCTCAACCCCCTGATCTATTCCCGCTTCTCCCGAGATTTTAGAAGAGCTTTCAAACAAATCCTCACGTGCCAACGCcaacaaaaagtcaaaactgCATTTAAAACTCCATTGTCACTTGTGTTCACTCAACTCATTTCTGTCACACAGATGTGGGAGCAGCCGCCAAACACTTCAATTGAATA------GATTT------------
i caeRem4.Crem_Contig24 I 25 C 0
s caeSp111.Scaffold548      435 267 +    67506 tttcagtgtTTCTCCAACAAAGAAACCATATTCACAATTGTCACCTGGGCTGGTCATCTGAACTCCATGCTCAATCCTTTGATATACTCTCGGTTTTCACGTGATTTCAGAAGAGCTTTTAAACAAATTCTCACATGCCAACGCCAACAAAAAGTTAAAACTGCTTTCAAAACTCCATTGTCACTAGTATTCACTCAACTCATTTCTGTTACTCAGATGTGGGAACAACCGCCAAACACTTCTATTGAgtaatt--ggttttttctgtt-----
i caeSp111.Scaffold548  C 0 I 449
s caePb3.Scfld02_62      489823 262 -   783054 TTTCAGTGTTTCTCCAACAAAGAAACCATCTTCACCATTGTTACCTGGGCTGGACATCTCAACTCCATGCTGAATCCCTTAATATATTCTCGCTTCTCTCGCGATTTTCGACGAGCATTTAAACAAATTCTCACGTGCCAACGCCagcaaaaagtcaaaactgCTTTCAAAACCCCATTGTCACTTGTGTTCACTCAACTTATTTCTGTCACGCAGATGTGGGAACAGCCGCCAAACACTTCGATCGAATa------gttttccctct------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   87830 268 -   140921 TTTCAGTGCTTATCCAACCGAgaaacaatatttacatttGTGACATGGGCTGGCCATCTCAACTCAATGCTTAACCCGTTAATTTATTCCCGATTTTCGCGTGATTTCAGAAGAGCTTTCAAACAGATTTTGACTTGCCAAAGACAGCAGAAAGTGAAAACTGCGTTCAAAACTCCGCTATCTCTTGTGTTCACCCAGCTTATTTCGGTGACACAAATGTGGGAACAACCACCGAATACTGCCATTGACTAACCCATGTTTGTGtatt------
i caeJap4.Scaffold17966 C 0 C 0

a score=-51.000000
s ce10.chrX             1298668 25 + 17718866 ---------ttttatttttgattttttttCAATT
s cb4.chrX                97503 22 + 21540570 ------------TTCctctgattttttcacaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  362043 25 +  1162296 ---------Tttattctctcatttttatagaatt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      490085 20 -   783054 ------------tttttatccttttttc--aatt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   88098 28 -   140921 ttttgtagattttaATTGTAATTTATTT------
i caeJap4.Scaffold17966 C 0 I 1805
e caeSp111.Scaffold548      702 449 +    67506 I

a score=-35.000000
s ce10.chrX             1298693 6 + 17718866 TGTAAT
s cb4.chrX                97525 6 + 21540570 tttcat
i cb4.chrX              C 0 I 644
s caeRem4.Crem_Contig24  362068 6 +  1162296 tgATAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      490105 6 -   783054 ttttgg
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e caeSp111.Scaffold548      702 449 +    67506 I

a score=-460.000000
s ce10.chrX             1298699 7 + 17718866 ---ATGAACA
s caeRem4.Crem_Contig24  362074 7 +  1162296 ---ATAAATA
i caeRem4.Crem_Contig24 C 0 I 740
s caePb3.Scfld02_62      490111 7 -   783054 agcatca---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                97531 644 + 21540570 I
e caeSp111.Scaffold548      702 449 +    67506 I

a score=654.000000
s ce10.chrX             1298706 61 + 17718866 GTTTTTTGGAGTACAGCAGAAGCTCGCTCTGAAAAAAAA---TTTAAAA-ATTAGAAATTGGTAT
s caePb3.Scfld02_62      490118 55 -   783054 ttttttatgat----------gCTCAGTTCGAAAtaaaacgtttcaaaatataaaaaattcgTGT
i caePb3.Scfld02_62     C 0 I 6764
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                97531 644 + 21540570 I
e caeSp111.Scaffold548      702 449 +    67506 I
e caeRem4.Crem_Contig24  362081 740 +  1162296 I

a score=0.000000
s ce10.chrX             1298767 3479 + 17718866  
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                97531  644 + 21540570 I
e caeSp111.Scaffold548      702  449 +    67506 I
e caeRem4.Crem_Contig24  362081  740 +  1162296 I

a score=653.000000
s ce10.chrX             1302246 82 + 17718866 ATGTAGAACCTCCTAAAGCTATTCCATTATTTTTTTGGAAACATGGGGGGAGAGAGCAAGTGAGAGAAGACGGGGGGAGCAC
s caeRem4.Crem_Contig24  362821 78 +  1162296 ATATACAACATC-TCAATCCATTTGATTATATTTTTGggcaaaaagaga---agagcacatcacaaacatgcacaaatacac
i caeRem4.Crem_Contig24 I 740 C 0
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                97531 644 + 21540570 I
e caeSp111.Scaffold548      702 449 +    67506 I

a score=391.000000
s ce10.chrX             1302328 3 + 17718866 ATT
s caeRem4.Crem_Contig24  362899 3 +  1162296 ata
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     1151 3 +    67506 ata
i caeSp111.Scaffold548  I 449 C 0
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                97531 644 + 21540570 I

a score=33037.000000
s ce10.chrX             1302331 245 + 17718866 CATGCACAAACACACACTC-------GCACTTGGTTGTTCCTTACCCCCTCACTGTTTCATTTTCTTAAGCCT---------------------ACATATATACTCT-----GCGTCTCCCAGCTCTCCCCCAACCGAAGCAGCAGCAGCATCGCCGGGCACCCTATGGCCGTGGACTAGTTCCCCCCATTTCCCGCTTCATATCTCTGCTCGCCCTCTTCCTTCTGTGTGCTCTCTCG-----GATCCTTACGCAGTAACTGACCATATGGTCAAGTGGTTG
s cb4.chrX                98175 231 + 21540570 cacgcacatacacacacTC-------------GCATGTTCCGTGCTTCC-CACTGTCGCA------TAAGCTG-ATTCTCTAA-AACCTCTTCGATTCGTACACTAT-TTATTTGTCATTC-GCAGCACACAAACGAAATC-----------------GCACCCTATGGCCGTGGACTAGTTCGC----TAGTcgcctttttttctct--acGCACTCTACCTATCACATtatatttcttttcatttctttttgcaGTAACTGACCATATGGCC-AACG----
i cb4.chrX              I 644 C 0
s caeRem4.Crem_Contig24  362902 230 +  1162296 ----cacatacacacactcaccacacgcacTTGTCTGTTCCGTGCTTCC-CACTGTCTCATTTTCTTAAGCTG-TTTCTCTGG-TCTCTATGCAATTGACAAACTATCTCACGCGTCACTT-GCCGCCCACGAACCAAATC-----------------GCACCCTATGGCCGCGGACTAGTTCAC----------CCTcagtgtctcg--tttctcttccCATCTCACACTATCTCGC------TTTCGTTTTGCAGTAACTGACCATATGGT----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     1154 238 +    67506 catgtatatatataCACTCGCCACAAGTACTTGCCTGTTCTGTGCTTCC-CACTGTCACATTTTCTTAAGCTGTTTTCTCTAGCACTCTCTTTTATATGCATACTATTTCGGCAGTTACTT-GCCGCCCACGAACTGAATC----------------GGCACCCTATGGCCGTGGACTAGTTCAC----------------TACTCCT--TCACTCTCCTCCCTTTGCTTTATAT---------TTCTCTTTCGCAGTAACTGACCATATGGTCTAATGGTTG
i caeSp111.Scaffold548  C 0 I 461
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I

a score=-412.000000
s ce10.chrX             1302576 53 + 17718866 GCGGGTGTGC-AG--TGCTAGTACGATTGTCTTGTC-------TATTGATTCTTTTTTTTGTC
s cb4.chrX                98406 61 + 21540570 GGTGTCGTGCTAGTTTGTCTGTACTACTCGGGTGGAATTTATCgattcatttgatttttcc--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  363132 52 +  1162296 --TGTTGTGCGAA--AGTTAGTACGAATGTGGTGAA-------TATTTTTTCGGCTTCTCATC
i caeRem4.Crem_Contig24 C 0 I 2883
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e caeSp111.Scaffold548     1392 461 +    67506 I

a score=507.000000
s ce10.chrX             1302629 45 + 17718866 A--TTCGGAGCTTGGCTGGAATTTTCTGGTTTTTAGGTTTTCAATAA
s cb4.chrX                98467 43 + 21540570 aacttCTGGGATCAACTG----TTTTTGATTGATATATTTGAAATAA
i cb4.chrX              C 0 I 2383
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e caeSp111.Scaffold548     1392 461 +    67506 I
e caeRem4.Crem_Contig24  363184 2883 +  1162296 I

a score=0.000000
s ce10.chrX             1302674 1587 + 17718866  
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I
e caeSp111.Scaffold548     1392  461 +    67506 I
e caeRem4.Crem_Contig24  363184 2883 +  1162296 I

a score=545.000000
s ce10.chrX             1304261 32 + 17718866 TTGTCTCCGCTCAACAAAATCATTCT--AGGAAG
s caeRem4.Crem_Contig24  366067 27 +  1162296 TCGtctctg-------aaatcatttttagggggg
i caeRem4.Crem_Contig24 I 2883 C 0
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I
e caeSp111.Scaffold548     1392 461 +    67506 I

a score=13567.000000
s ce10.chrX             1304293 326 + 17718866 -CTCTTCTGTCTGT------TTTTATTCCTCGCCCGTTTCTTTTTGTTGGCTGGTTGGGTTTCAG-AGGAGACGAAGCCT--------------TGTCTC--CGTTTGTTTGCTCATTCCCCCCCCCCCCCTCTCATCCTCAACTCCTCTTCTGGCGGCTCATTCTTCTCTTGTTTGCAACAACTATCGCATTTTCTTCGACGGCTGAAACAGAAAAAAAGCCCCCCGACGACAGCTATTTTGAAACAAATCTCTCATACATTCTTAAT--GCTTTTTTTTGTTTTTCAGAAAGATTCCGGTCAGG-----CTGGTGATGGATACGAGGAAGGTGTCGGTATCAAATACAAGTGAGT
s caeRem4.Crem_Contig24  366094 285 +  1162296 cctctctttttttc------tctcttctttttccccctTCCCTTTGTTGGT---TGGGGTTTCAGGAGGGAGCAAAGCCTCTC---GGTCCTCCCGTTTC--TGTTTGTTTGCTCAT------TCAACTCCTCTCAT----------TCTTCTTGTTGcaaattccttctttttttgcgcCA--TATTG-------GTGAACGAGCCCAGtggagaaaata---------------------gaaatca-------atgaattcCCAATGAGGATATTATTG-----CAGATTGTCTGCGTTCCGTGTTGCCGTGGAATGGATTCTCGGAACGTTTTGGTATCGAACACAAGTGAGt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     1853 266 +    67506 -ctcttctttctccatACTATTATTTCTCTGCTCccattccctttttttgtttgttggGTTTC---AGGGAGCAAAGCCTCTCTGGAGCCTTTCTGTTTCTGTGTTTGTTTGCTCAT------Ccaaattttctcat----------tcttcttgttgtaaattc-----ttttttggttca--tat-------------------------gaaaataag---------------------aaaatca-------atgaattttcaataagcTTTTCATTG-----CAGATCTTTTGTCGCCCGG------GTATAATGGACTCACGAAAAGTGTCTGTGTCAAATACGAGTGAGT
i caeSp111.Scaffold548  I 461 I 245
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I

a score=453.000000
s ce10.chrX             1304619 9 + 17718866 CTTTTTTTA
s caeRem4.Crem_Contig24  366379 9 +  1162296 ttctcttta
i caeRem4.Crem_Contig24 C 0 I 274
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I
e caeSp111.Scaffold548     2119 245 +    67506 I

a score=0.000000
s ce10.chrX             1304628 1428 + 17718866  
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I
e caeSp111.Scaffold548     2119  245 +    67506 I
e caeRem4.Crem_Contig24  366388  274 +  1162296 I

a score=494.000000
s ce10.chrX             1306056 11 + 17718866 ATCACCCCTCA
s caeRem4.Crem_Contig24  366662 11 +  1162296 ATCAGCTCTCC
i caeRem4.Crem_Contig24 I 274 C 0
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I
e caeSp111.Scaffold548     2119 245 +    67506 I

a score=273.000000
s ce10.chrX             1306067 1 + 17718866 T
s caeRem4.Crem_Contig24  366673 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     2364 1 +    67506 t
i caeSp111.Scaffold548  I 245 C 0
e caePb3.Scfld02_62      490173 6764 -   783054 I
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I

a score=-854.000000
s ce10.chrX             1306068 10 + 17718866 TCTTACTCAA
s caeRem4.Crem_Contig24  366674 10 +  1162296 ATCCATTCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     2365  8 +    67506 --tcattttc
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      496937  6 -   783054 ----ttttgc
i caePb3.Scfld02_62     I 6764 C 0
e caeJap4.Scaffold17966   88126 1805 -   140921 I
e cb4.chrX                98510 2383 + 21540570 I

a score=609.000000
s ce10.chrX             1306078 2 + 17718866 TT
s caeRem4.Crem_Contig24  366684 2 +  1162296 TC
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold548     2373 2 +    67506 tt
i caeSp111.Scaffold548  C 0 I 2
s caePb3.Scfld02_62      496943 2 -   783054 cC
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold17966   89931 2 -   140921 TT
i caeJap4.Scaffold17966 I 1805 C 0
e cb4.chrX                98510 2383 + 21540570 I

a score=116668.000000
s ce10.chrX             1306080 246 + 17718866 TCCAGCTTCACCACGACAATCTTCTGACACTGAGATGAGCTCCTCATGCGCCACCTCAACAGCTTCAGCCATCGACGAGTCTGACGTGAGATTCTCGTTTCAAGACACAATTCAAGCCATCCG----------------------ACACATGTCGTCCAACA---CT--GATGACTCGACCAATCAGAATGGGGTGGCCGCCGTCAAGACC-----AATG--GATTCCACTAT---GGGTCCAGCTCGAGCAGCTGGGTGCGGCTTAATGTTGGCGGGAAGGT
s cb4.chrX               100893 237 + 21540570 TTCAGTTTCGCCTCAACAGTCGT------CGGAAATGAGTTCATCATGCGCCACATCAAGTACGTCAGCAATCAACGAGTCGGATGTGCACTTACCGTACATGGACTCAATGCAAGCTATCAG----------------------GAACATGTCTATCTCAGCTACT--GATGATTCTACTAATCAAAATGGGAC------AGTGAAGACA-----AATG--GGTTCCATTTC---GGATCTAATTCTAACAATTGGGTTCGCCTTAATGTTGGTGGAAAGGT
i cb4.chrX              I 2383 C 0
s caeRem4.Crem_Contig24  366691 246 +  1162296 TTCAGCGTCCCCACGACAATCGTCCGACACTGAAATGAGTTCCTCATGTGCCACATCAACTGCCTCGGCCACTGACGAATCAGACGTCAGATTCCCGTTCCAAGAGACTATTCAAGCAATTCG----------------------AAACATGTCGGTGTCCG---CT--GACGACTCGACTAATCAAAATGGGAT--------TGGAAGCAAATCTAATG--GATTCCATTACGGAGGATCCAGTTCTAGCAACTGGGTTCGTCTCAATGTTGGAGGAAAAGT
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold548     2377 240 +    67506 ttcagcttcacCAAGACAATCTTCTGATACTGAAATGAGTTCTTCCTGTGCCACATCAACAGCTTCTGCCATTGACGAAACTGACGTCAGATTCTCGTTCCAGGAAACTATCCAAGCAATCAG----------------------GAATATGTCGGTAACTA---CA--GACGATTCTGCTAATCAAAACGGCGT------CGTCAAGACT-----AATG--GTTTCTATTAT---GGATCCAGTTCAAGCAACTGGGTGCGACTCAATGTTGGAGGCAAGGT
i caeSp111.Scaffold548  I 2 I 1109
s caePb3.Scfld02_62      496947 252 -   783054 TTCAGCTTCACCGCGCCAATTTTCTGATATCGAAATGAGTTCT---------ACATCATCTACGTCAGCCAATGGCGACGCTGA---TAGATTTTCATTTGCAACCACTCTTGAAGCTATCAGAAACTTCACCGACGAAGAAACCAAACATCTCAAAAGCTT---CATCGAGGATTCTAGCAATAAGAATGGGGT------AGTCAAGACC-----AATG--GCTTCCATAAT---GGGACCAGTTCTAAAAACTGGGTACGACTGAATGTCGGTGGAAAGGT
i caePb3.Scfld02_62     I 2 I 1793
s caeJap4.Scaffold17966   89933 228 -   140921 TTCAGAATCACAACAGCATACTTCAGACACAGAGATGAGCTCTTCAAGCACAACTTCAACAACTTCAATCAGTGACGAAAGCGACAGAAAATACTCATTTCTAGAGTCGATGCAATCTTCCAG----------------------AAACGTCACTATAG------CA--GATGACTCAACAAACCAGAATAG---------CGTTATGGTA-----AATGCTACTTCC--------GGATCGGGTTCTAG---TTGGGTTCGTTTGAACGTTGGCGGCAAGGT
i caeJap4.Scaffold17966 C 0 C 0

a score=965.000000
s ce10.chrX             1306326 5 + 17718866 TAGTT
s cb4.chrX               101130 5 + 21540570 AAGTT
i cb4.chrX              C 0 I 80
s caeRem4.Crem_Contig24  366937 5 +  1162296 GAGTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   90161 5 -   140921 GAGTA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      497199 1793 -   783054 I
e caeSp111.Scaffold548     2617 1109 +    67506 I

a score=62.000000
s ce10.chrX             1306331 41 + 17718866 TAGTTTGCT------CCTGGTTTTCTTGATAAA----CAGA-----TAAAAAACCA
s caeRem4.Crem_Contig24  366942 50 +  1162296 TAACTTAAT----TGCTTGAACTCATTGATATAGT--CAGATGTGGTAAAAAACTA
i caeRem4.Crem_Contig24 C 0 I 654
s caeJap4.Scaffold17966   90166 51 -   140921 TTATTCACTGTAATGGATGGTGTTAtccacgaaatggcaaa-----aaaaaaactg
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      497199 1793 -   783054 I
e cb4.chrX               101135 80 + 21540570 I
e caeSp111.Scaffold548     2617 1109 +    67506 I

a score=479.000000
s ce10.chrX             1306372 10 + 17718866 CGAAAAAGTT
s caeJap4.Scaffold17966   90217 10 -   140921 cgcgaaaatt
i caeJap4.Scaffold17966 C 0 I 380
e caePb3.Scfld02_62      497199 1793 -   783054 I
e cb4.chrX               101135 80 + 21540570 I
e caeSp111.Scaffold548     2617 1109 +    67506 I
e caeRem4.Crem_Contig24  366992 654 +  1162296 I

a score=0.000000
s ce10.chrX             1306382 1098 + 17718866  
e caePb3.Scfld02_62      497199 1793 -   783054 I
e caeJap4.Scaffold17966   90227  380 -   140921 I
e cb4.chrX               101135   80 + 21540570 I
e caeSp111.Scaffold548     2617 1109 +    67506 I
e caeRem4.Crem_Contig24  366992  654 +  1162296 I

a score=54.000000
s ce10.chrX             1307480 5 + 17718866 TCGAG
s caePb3.Scfld02_62      498992 5 -   783054 TCGTT
i caePb3.Scfld02_62     I 1793 C 0
e caeJap4.Scaffold17966   90227 380 -   140921 I
e cb4.chrX               101135 80 + 21540570 I
e caeSp111.Scaffold548     2617 1109 +    67506 I
e caeRem4.Crem_Contig24  366992 654 +  1162296 I

a score=1302.000000
s ce10.chrX             1307485 3 + 17718866 TTT
s cb4.chrX               101215 3 + 21540570 ttc
i cb4.chrX              I 80 C 0
s caeRem4.Crem_Contig24  367646 3 +  1162296 TCC
i caeRem4.Crem_Contig24 I 654 C 0
s caeSp111.Scaffold548     3726 3 +    67506 TTC
i caeSp111.Scaffold548  I 1109 C 0
s caePb3.Scfld02_62      498997 3 -   783054 TCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   90227 380 -   140921 I

a score=76140.000000
s ce10.chrX             1307488 94 + 17718866 AGGTATTCCAAACGACAAGATCAACGCTGATGCGTGAGCCGTGCTCGTTTCTCTACCGCCTGTGCCAAGACGAGATGGGCCTCCCAACTGATCG
s cb4.chrX               101218 94 + 21540570 agatttttcaaacgaCAAGATCAACTTTGTCACGAGAGCCATGCTCATTCCTCTACCGTTTGTGTCAGGATGAGCAGGGTCTCCCAACTGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  367649 94 +  1162296 AGGTCTTCCAAACCACGCGATCAACTTTGATGCGTGAGTCAGGATCATTCCTCTACAGACTTTGTCAGGATGAGCTTGGCCTTCCAACTGATAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     3729 94 +    67506 AGGTTTTTCAAACAACAAGATCAACTTTGATGCGCGAGTCAGGCTCATTTCTCTATCGTTTATGTCAAGATGAATTGGGACTCCCGACAGATAA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      499000 94 -   783054 AGGTTTTCCAAACAACTCGTTCAACTCTCATGCGTGAGCCGGGATCTTTCCTATACCGCCTCTGCCAAGATGAGATGGGACTTCCGACTGACAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   90607 94 -   140921 AGGTGTTTCAAACCACAAGATCAACACTGATGCGTGAGCCTGGTTCATTCTTATATCGCTTATGTCAAGACGAGCTAGGCTTAAGCACTGACAA
i caeJap4.Scaffold17966 I 380 I 586

a score=204563.000000
s ce10.chrX             1307582 348 + 17718866 GGATGAGACCGGCGCCTACTTGATCGATCGGGACCCGGACTTTTTCTCGCCCATCTTGAACTATCTAAGACATGGCAAACTGATCATGAACCCGGGACTTTCGGAAGAAGGAATTCTTGCGGAAGCTGATTTTTATAACTTGCCAAGTTTGAGTCAGCTGATCATGGATCGTATTCAAGACAGGGAGAATAGTGTTAAAGAT-------GCGGTAGGTTTGGA-TGAAGCGGCTT-----GTAATTTTTTTTTCT--TCAA--ATTTCAGACTAACAAATTTGTGTACCGCGTGCTGCAGTGTCACGAGGAGGAGCTCGCTTCGGTGGTATCTGCTATGACGGATGGGTGGAAGATTGTTCAAGT
s cb4.chrX               101312 343 + 21540570 AGATGACACTGGGGCGTACTTGATAGACAGAGATCCCGAtttttttGCTCCAATCCTTAACTACCTCCGTcatggaaaattgattttaaatcCTGGTCTCTCAGAAGAGGGAATTCTTGCTGAGGCAGATTTTTACTGCATCCCGAGCCTCAGTCAGTTAGTGATGGAACGCATTCAAGATCGAGAAAATCTC---AAAGAC-------GCGGTAt--------caaatcacattttttgatgagACTATGTTTG--TAAC--TTTTCAGGCAAACAAATTTGTCTATCGCGTGCTCCAATGCCACGAGGAAGAGCTTGCTTCAGTGGTTTCTGCTATGACTGATGGTTGGAAAATAGTGCAGgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  367743 350 +  1162296 GGATGAGACTGGCGCATACTTGATTGACCGCGATCCGGActtcttctctccaattttGAACTATCTCCGTCACGGAAAACTCATCTTGAATCCGGGACTCTCTGAGGAAGGAATCTTGGCGGAGGCGGACTTCTACAACTTGCCAACTCTGAGCCAACTGATCATGGATCGTATGCAAGACAGAGAGAGCGGC---TTAAACTGCTTGGTTGGTTT--------CgaattttccttttcagtG----TTTGGTTaactaacaattttcagtcaaacaaATTCGTCTACCGCGTGCTCCAGTGTCATGAGGAAGAGCTCGCATCAGTTGTTTCGGCAATGACTGATGGTTGGAAGATTGTTCAGGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     3823 344 +    67506 AGATGACACTGGTGCATATCTAATCGATAGAGATCCCGATTTTTTCTCACCTATTCTCAATTATCTTCGTCATGGCAAACTCATTCTCAACCCGggagtttcagaagaaggaatTCTGGCGGAGGCAGATTTTTACAATCTACCAATGCTGAGTCAACTGATAATGGACCGTATACAAGACAGAGAAAGTGGGCTTAAAGAT-------ATGGTTTGTTCGCTCATAAACGCACT--TAaacga-------attt--tcaa---tttcagacaaACAAATTTGTATATCGTGTTTTGCAGTGCCACGAGGAGGAACTAGCTTCCGTGGTTGCGGCTATGACTGATGGTTGGAAAATTGTACAAGT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      499094 348 -   783054 AGACGAGTCCGGAGCTTATCTCATTGATAGAGATCCCGATTTCTTCTCGCCAATTCTCAACTATCTTCGTCATGGAAAACTCATCATCCCTCATGGTATCCCAGAAGAGGGAATACTCGCAGAAGCTGACTTCTACAACTTGCCAGTTCTCAGTCAATTGGTCTTGGATCGTATTCATGAAAGAGAGACCATG---AAAGAT-------TCGGTTCGTGCG---AGAAAATCACTGATGGGTGAT--Tattatct--tgaaaattttcagacaaacaaGTTTGTCTACCGCGTGCTCCAGTGTCACGAGGAAGAGCTCGCCAATGTGGTTTCAGCTATGAGTGATGGGTGGAAAATCGTTCAGGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966   91287 340 -   140921 ggATTCCACAGGGGCTTACCTGATCGACCGCGACCCAGACTTCTTTTCCCCCATCTTGAACTATCTTCGACACGGAAAGCTGATTCTCAACAATGGTATATCAGAGGAAGGGATTCTGGCCGAAGCAGATTTTTATAATCTTCCTAAACTCAGTCAACTTATTATTGACAGAATGCAAGATCGGGAAATCAATCTTAAAGAC-------TCGGTAATT------TGGATTTTGTTTTATGATGA-------AGTG--GAACTTATTACAG---AACAAATTTGTGTATCGGGTTCTGCAGTGCCACGAAGAGGAATTGGCTTCAGTGGTTTCAGCAATGACAGACGGATGGAAAATTGTGCAggt
i caeJap4.Scaffold17966 I 586 I 124

a score=910.000000
s ce10.chrX             1307930 1 + 17718866 A
s cb4.chrX               101655 1 + 21540570 a
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig24  368093 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 I 84
s caeSp111.Scaffold548     4167 1 +    67506 a
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      499442 1 -   783054 A
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   91627 124 -   140921 I

a score=-6956.000000
s ce10.chrX             1307931 22 + 17718866 --------------------------------GGCGCATATACCTCCTAA----CCCG
s cb4.chrX               101678 42 + 21540570 --------------GGAATGAATACATT--AAAAAATATCTAACTTATTTAAACGTTG
i cb4.chrX              I 22 C 0
s caeSp111.Scaffold548     4168 49 +    67506 agaaag---aataagaaacaaaaaaatatgataGTCCATAAAGTGTAT------GCTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      499443 51 -   783054 AGGAAGCGAGATAAcgaataacaagaaa--aaaggcTATGTAATTTTTG-----GTTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   91627 124 -   140921 I
e caeRem4.Crem_Contig24  368094 84 +  1162296 I

a score=362.000000
s ce10.chrX             1307953 11 + 17718866 CCTAAATAAAA
s cb4.chrX               101720 11 + 21540570 AATGAATACAT
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold548     4217 11 +    67506 ACTATAAGCAA
i caeSp111.Scaffold548  C 0 I 26
s caePb3.Scfld02_62      499494 11 -   783054 ACTGATAACAA
i caePb3.Scfld02_62     C 0 I 29
s caeJap4.Scaffold17966   91751 11 -   140921 TCCAACCAAAA
i caeJap4.Scaffold17966 I 124 C 0
e caeRem4.Crem_Contig24  368094 84 +  1162296 I

a score=125298.000000
s ce10.chrX             1307964 161 + 17718866 AAAATTT---------------------------------------------------------------------CAGGTAGTCCCAATCAACTCCAACTACACCAACTACACTACCGAACAGCCTCAAGAGTACCTGTGCATCGTGGAAAGAGAGTGCCCCGACAATGGAAGTATGCTTGAAGGACAGGATCGTGCAAAGCTGCTCCAGCAAAGAGCTAGACGTTGGT
s cb4.chrX               101752 161 + 21540570 ACCTTTT---------------------------------------------------------------------CAGGTGGTCCCAATCACTTCCAACTATTCTACATACACAGCCGAGCAGCCGCAGGAGTATTTGTGTATAGTAGAGAGAGAGTGCCCTGACAACGGCAGCATGAATGAAGGACAAGATCGTGCTAAACTGCTACAACAGAGAGCCAGACGTAAGT
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig24  368178 161 +  1162296 AATTTTA---------------------------------------------------------------------CAGGTCGTTCCAATCACTTCGAACTATTCGACGTACACTGCAGAACAACCACAGGAGTACTTGTGTATCGTGGAAAGAGAGTGCCCGGATAGTGGAACCATGGTAGAGGGACAAGATCGTGGCAAACTTCTTCAACAGAGAGGCAGACGTAAGT
i caeRem4.Crem_Contig24 I 84 C 0
s caeSp111.Scaffold548     4254 161 +    67506 attgtta---------------------------------------------------------------------taGGTAGTTCCAATAACTTCCAACTATTCAACTTACACTGCTGAGCAACCACAAGAATACTTGTGCATTGTGGAAAGGGAGTGCCCTGATAACGGTGGAATGTTGGAAGGACAGGATCGTGCCAAGCTTCTTCAGCAAAGAGCAAGACGTGAGT
i caeSp111.Scaffold548  I 26 I 1584
s caePb3.Scfld02_62      499534 230 -   783054 aatttcagGGAAGTAGTTATGTTTTGAGTTATtcgtcaaaaacaaaaaatacggGGAGCGGCAAACATTTTAATTTTAGGTGGTCCCGATCACATCGAACTACTCGACTTACACTGCTGAGCAGCCACAAGAATACTTGTGCATCGTCGAGAGAGAGTGCCCAGACAACGGAAACATGAAGGAGGGGCAAGATCGTGCCAAGCTTCTTCAACAAAAGGCCAGACGTACGT
i caePb3.Scfld02_62     I 29 C 0
s caeJap4.Scaffold17966   91762 179 -   140921 AACCTTG------TActcctttttttaatta---------------------------------------------tagGTAGTTCCCATCAATTCAAATTACTCGGCTTACGCTGCCGAACAACCACAGGAATATTTGTGCATTGTGGAAAGAGAGTGCCCTGATAATGGTGGAATGCTGGATGGGCAAGATCGCGCTAAACTTCTGCAGCAGAGAGCAAGACGTAAga
i caeJap4.Scaffold17966 C 0 C 0

a score=-999.000000
s ce10.chrX             1308125 2 + 17718866 -TT
s cb4.chrX               101913 2 + 21540570 -TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  368339 2 +  1162296 -TG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      499764 2 -   783054 -TT
i caePb3.Scfld02_62     C 0 I 1578
s caeJap4.Scaffold17966   91941 2 -   140921 at-
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold548     4415 1584 +    67506 I

a score=-96.000000
s ce10.chrX             1308127 1 + 17718866 T
s cb4.chrX               101915 1 + 21540570 T
i cb4.chrX              C 0 I 2099
s caeRem4.Crem_Contig24  368341 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold17966   91943 1 -   140921 t
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      499766 1578 -   783054 I
e caeSp111.Scaffold548     4415 1584 +    67506 I

a score=485.000000
s ce10.chrX             1308128 5 + 17718866 GAAGA
s caeRem4.Crem_Contig24  368342 5 +  1162296 GAGGA
i caeRem4.Crem_Contig24 C 0 I 1320
s caeJap4.Scaffold17966   91944 5 -   140921 taaaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      499766 1578 -   783054 I
e cb4.chrX               101916 2099 + 21540570 I
e caeSp111.Scaffold548     4415 1584 +    67506 I

a score=159.000000
s ce10.chrX             1308133 4 + 17718866 AGTT
s caeJap4.Scaffold17966   91949 4 -   140921 tgtt
i caeJap4.Scaffold17966 C 0 I 28248
e caePb3.Scfld02_62      499766 1578 -   783054 I
e cb4.chrX               101916 2099 + 21540570 I
e caeSp111.Scaffold548     4415 1584 +    67506 I
e caeRem4.Crem_Contig24  368347 1320 +  1162296 I

a score=0.000000
s ce10.chrX             1308137 2890 + 17718866  
e caePb3.Scfld02_62      499766 1578 -   783054 I
e caeJap4.Scaffold17966   91953 28248 -   140921 I
e cb4.chrX               101916 2099 + 21540570 I
e caeSp111.Scaffold548     4415 1584 +    67506 I
e caeRem4.Crem_Contig24  368347 1320 +  1162296 I

a score=598.000000
s ce10.chrX             1311027 15 + 17718866 TAATTTTGAACCAGA
s cb4.chrX               104015 15 + 21540570 TAATTCTGTTCTGGA
i cb4.chrX              I 2099 C 0
e caePb3.Scfld02_62      499766 1578 -   783054 I
e caeJap4.Scaffold17966   91953 28248 -   140921 I
e caeSp111.Scaffold548     4415 1584 +    67506 I
e caeRem4.Crem_Contig24  368347 1320 +  1162296 I

a score=-464.000000
s ce10.chrX             1311042 3 + 17718866 ATC-
s cb4.chrX               104030 4 + 21540570 ATGT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      501344 3 -   783054 ATG-
i caePb3.Scfld02_62     I 1578 C 0
e caeJap4.Scaffold17966   91953 28248 -   140921 I
e caeSp111.Scaffold548     4415 1584 +    67506 I
e caeRem4.Crem_Contig24  368347 1320 +  1162296 I

a score=1012.000000
s ce10.chrX             1311045 5 + 17718866 CCGGT
s cb4.chrX               104034 5 + 21540570 TCGGT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold548     5999 5 +    67506 CCGAT
i caeSp111.Scaffold548  I 1584 C 0
s caePb3.Scfld02_62      501347 5 -   783054 CTGAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   91953 28248 -   140921 I
e caeRem4.Crem_Contig24  368347 1320 +  1162296 I

a score=19461.000000
s ce10.chrX             1311050 100 + 17718866 AAATGTTTGTAA---TGTC---ATTTCTTTTTCCCGAATGTGTC----GCATATAT-TTATTC---TGTCTTATCGTGTCTTTCTATGGAATTAATGCAGAGAAGGGGGGCCTG
s cb4.chrX               104040  83 + 21540570 GAATGTGTTTGGA--TTTG---TTGTAT----------TTTAC-----ATATACATCGTCTTTCTGCGACTTATCGT-TTATTCAATAGACCTGATCCTGA----------CTG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  369667  85 +  1162296 AAATGTCCGTAAATGTCTT---Ttgtat---------gtgtat-----gtatgtat-gtattcatgtgtCTTATCGT-TTATTCAATAGAACTAATGCAGA----------CTG
i caeRem4.Crem_Contig24 I 1320 C 0
s caeSp111.Scaffold548     6004  81 +    67506 GATTGTTCGTAA---TGTC---TTGTC----------GTATGT-----GTATGCAT-TTATTCGTGTACCTTATCGT-TGATTCAATAGAACTAATGGAGA----------TTG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      501352  90 -   783054 GAATGTTCGTAA---TGTCACTTTGTCT---------GTATGTTGTGgatatttat-tcattcatgTGTCTTATCgt-ttattcaataaaactaATGTTGA----------CTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966   91953 28248 -   140921 I

a score=70960.000000
s ce10.chrX             1311150 267 + 17718866 CGAACCGGAACAT-CTCCTATTCTCTCTCGCCCACATATGTTTAACACA---TTCA------ACGCCTTTCGAT-----CAGATCTCTCTCTCTGTCCGGCGATCGGATAAAGTGAAACTGGACAA--CTTTTGCCCCCTTCACC------------------------CGCATTGGTCACTACAGA-------------TAAAAAAGAGTGTGGATAAGTT-CGAGACC------ATCTCGGGAT--------GGCGG--GTGGACCGATCCGGAGAAGTAGGAGGAGAGTGAAGAGAAACGTACATATCTGAATGTGACCTCTTTTCC-----ATCAGAAA-----
s cb4.chrX               104123 254 + 21540570 CAAACCGGAACA----GATATCCT----------CGTATGTTTAACAAAATCCTCTGCC---TTTC-ATTCAAC-GTACAAG--AGATCTT--------GCAATCGGATAAAGTGAAACTGGACA-----TCTTCTGGTCCACTC------------------------TCTTTCTTTCCTCACAAGCCCTCTTTGATTGAAATAAAGACTATGGGTAACTTGAGAGACCATAGTCGTCGCGGAATGAGTGGGCGACGGGAGTAGG-CGATCCGGAGA--------------------AAACGTATACATCTGAATGTGACCTCTTTTCT-----ATC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  369752 232 +  1162296 CGAACCGGAACA----TGTCTCCT----------CATATGTTTAACACA---TTCTGTC---TTTCTTTTCGACGGGACGAGATAGATCTT--------GCAATCGGATAAAGTGAAACTGGACAAAATTTTTGGTGGCCCCCTC------------------------CCCAATTCT----------------------GAATAAAGACTATGGATAACTTGAGAGACC--TGACGTCTCGGGATGAGTGGGCGGCGG--GTAGG-CGATCCGGAGA--------------------AAACGTAT--ATCTGAATGTGACCTCTTTTCC-----ACC----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     6085 230 +    67506 CAAACCGGAACAC-TGTCTCCTCT----------TGTATGTTTTACACA---TTCTGTCG--CTTCTTTTCAAC-----GAGATAAATCTT--------GTATTCGGATAAAGTGAAACTGGACAA-Cgctttccttttcct---------------------------cccATTTTA----------------------GGATAAAGACTATGGATAACTTGAGAGACT--TGACTAT-CGGGATGAGTGGGCGTCGG--GTAGG-CGATCCGGAGA--------------------AAACGTAT--ATCTAAATGTGACCTCTTTTCCACAC-CAC----------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      501442 258 -   783054 CGAACCGGAACAC-TGTCTCTCCT----------TTTGTGTTTAACAca---ttctctcgattttcttttcgaC-----AGGATTGATCTT--------GCAATAGGATAACGTGAAACTGGACAATCGTTTTGCCTTTCCTTCCTCTCACTCACACAGAACTTCGACGCCCATTTCT----------------------GGATAAAGACTATGGATAAATTGAGAGACA--TGACGTT----GTGGAGTGGGCGGTGG--GTAGC-CGATCCGGAGA--------------------AAACGTAT--ATCTGAATGTGAcctcttttcctttctccc----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  120201 209 -   140921 CAAACCGGAATACGCCCGTTTTTC----------TATCTGTTTCGCATA---TATT------TTGTTGTTCGAT-----CCG--AGATCTG--------GCGAGCGGATAATGTGAAACTGAACA-------------TCTTTCC-------------------------------------------------------ATACATAGACTGTACCCAAATCTAGAGACG-----CATATTTGAAGGATTG---GGCGG--GAATG-TAATCCGGAGA--------------AAAGGAAAACGTGT--ATCTGAATGTGACCTCTTTTCC-----ATT-----ACAAA
i caeJap4.Scaffold17966 I 28248 I 261

a score=34016.000000
s ce10.chrX             1311417 140 + 17718866 GTGTGTGAGGGGGCCGgagagaaagag-agagagagag----------agagagggagaAACCCAGTTAGGAACAACCAGGATTGCTGCTGGATATCTCATTAACCAGCATT---TTCAAA---TCGACGAGAAGTACTGTTTTATTTTCATTTGCG
s cb4.chrX               104377 134 + 21540570 --------GAGAACAGGGTaaaacaagaaaagagtgggaagagaaaaaagagaaagagaaaccTAGTTAGGAGAA--CGTGCT--------GCTATCTTATTAACCACAAAT---TCCAAATCGTCGGGGGCAAGAACCG-TTTA-TTTCATTTGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  369984 120 +  1162296 --------GAGAACAGGAGAGAgaacgagaaaattgag----------agagaaaaggaaaccCAGTTAGGGAAA----GGCT--------GCTATCTCATTAACCAGCATT---TCCAAA---TCGGGAAGAAGTACTGTTTTA-TTTCATTCGCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     6315 118 +    67506 --------GAGAACTggcaagaaaaagaagagagagag-------------agagagaaatccTAGTCAGGGAAA--CAAGGC-------GGATATCTCATTAACCAAGATT---TTTAAA---TCGAAAGGAAGCACCGCTTCA-TTTTATTCG--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      501700 118 -   783054 --------GAGAACTTG--AGAGAAGGGAGGGacaaga-------------gaaatgaaaacctAGTTA-GGAAA--CAGGCT---------ATATCTCATTAACCAGCGTTTCCTCCGAT---TCGGGAAGAAGTACTGTTTTA-TTTCACTCGCG
i caePb3.Scfld02_62     C 0 I 558
e caeJap4.Scaffold17966  120410 261 -   140921 I

a score=67.000000
s ce10.chrX             1311557 1 + 17718866 C
s cb4.chrX               104511 1 + 21540570 C
i cb4.chrX              C 0 I 147
s caeRem4.Crem_Contig24  370104 1 +  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     6433 1 +    67506 T
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      501818 558 -   783054 I
e caeJap4.Scaffold17966  120410 261 -   140921 I

a score=4221.000000
s ce10.chrX             1311558 145 + 17718866 ACGCCGACGCAAAAGCCTAAACGATTTGTTTCTTTTTACAGCAGGCCTCCCACCATCATGATAGTCTACAGTATCCTTGCGTTACTTTGTATTGGCTCAGTCACTTCTAAAGCAGTCAAGGCAAAAGGTAAGTAATCACTAAAAT
s caeRem4.Crem_Contig24  370105 108 +  1162296 ----TCTCGCCTGTGGCTTGCCAATTGACCAT-------------------CAAACAATGATCCGCTACAGTATACTTGTGCTGCTCTGTATTGGCTCCGTTTCTGCTAAAAGTGTTGCGAAGAAAGGTAA--------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     6434 137 +    67506 ---ATCTCGTTTGTGGTTTGCCAATTTATCAT-TATTGCAGGACGATT--CTACACTATGATTCTCTATAGTATCATACTCTTACTGTGTATTGGATCTTTAGAGGCTAAAAGTGTCGCAACAAAAggtga--aatttttaaaat
i caeSp111.Scaffold548  C 0 I 94
e caePb3.Scfld02_62      501818 558 -   783054 I
e caeJap4.Scaffold17966  120410 261 -   140921 I
e cb4.chrX               104512 147 + 21540570 I

a score=-6940.000000
s ce10.chrX             1311703 777 + 17718866  
s caeRem4.Crem_Contig24  370213 439 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      501818 558 -   783054 I
e caeJap4.Scaffold17966  120410 261 -   140921 I
e cb4.chrX               104512 147 + 21540570 I
e caeSp111.Scaffold548     6571  94 +    67506 I

a score=-1818.000000
s ce10.chrX             1312480 53 + 17718866 ---TATTTTTCATTTTGGTGA--CGTTTCCAACCTGAAAAAGCAATATTTCAGACTCT
s cb4.chrX               104659 55 + 21540570 ---TGCTTTCCAATTTGTCAAAgatattctaaatttcattAGTAAAGATTCAGATGTA
i cb4.chrX              I 147 C 0
s caeRem4.Crem_Contig24  370652 36 +  1162296 CTTTGTTTCCT------TCAA-------CAACATTTCAT---------TCCAGACACG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      501818 558 -   783054 I
e caeJap4.Scaffold17966  120410 261 -   140921 I
e caeSp111.Scaffold548     6571 94 +    67506 I

a score=12307.000000
s ce10.chrX             1312533 21 + 17718866 TGCGAGGAGAGCAAAACTCAC
s cb4.chrX               104714 21 + 21540570 TGTGACGAAAATAAGACACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  370688 21 +  1162296 TGCGATGAGAGCAAAACACAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     6665 21 +    67506 TGCGATGAAGATAAAACTTAT
i caeSp111.Scaffold548  I 94 C 0
s caePb3.Scfld02_62      502376 21 -   783054 tgcGATGAAagcaaaactcac
i caePb3.Scfld02_62     I 558 C 0
e caeJap4.Scaffold17966  120410 261 -   140921 I

a score=153981.000000
s ce10.chrX             1312554 342 + 17718866 TTCTTCGTAACAGACAATGCCAGTCTGCAATCAGCCGACCCAATTGTCTACAAAGCAACTTCCGAAGAAGAATGCTTGTCAGCTTGCACAAAAAATAGAGTGAG------------CTCCACAAAAAAATTGCTCCTAAATTCCAAAATTTCATATTCAGGACAAGTTCGACAGACCAATCGTTTGCCACTCTTTCACCTACGACCACGCCAGCTTCTCCTGCACCATCCACAAGGAGAAGTCAGCTCCAGTTGGGTCTGCTCAAATTGAAAATTCGGTTGGAAAGAGATACTTTGAGAAGATTTGTCTATCACGTGAGTT--------------------ATTGGGAAGCTTTCAAAATGTCTTCTAATTGCC
s cb4.chrX               104735 355 + 21540570 TTTTTTGTGATTGACAATGCTGGCCTGCAATCTTCGGATCCGATTGTTTACAAAGGAACATCAGAGGAAGAATGCTTGAAGACATGCACACAAAACAGAGTAAAAc--------tcttttc-----tctttgtttCGTCATGataatgtttttattttaggACACATTCAACCGTCCAATTCAGTGTAGCTCATTCACTTATGACCATGCTAGTTTGTCATGCACAATTCATTCTGAGAAGTCGTTACCTGTTGGATCTGCTCAAATTGAAACTGCTGTTGGAAAAAGATACTTTGAGAAAACCTGCATCTCTTGTGAGTT--TTGTGAATGCGCTTAGTGAAccaaaaacatt----atttttttttgatgta
i cb4.chrX              C 0 I 86
s caeRem4.Crem_Contig24  370709 356 +  1162296 TTCTTTGTCACTGACAATGCCAGTCTACAGTCTTCCGATCCCATTGTGTATAAGGCTACTTCTGAAGAAGAGTGCCTGAAGACGTGCACACAGAACAGagtgagaa--------ttttttaaaccgtTTTTACTTTATTCTGG----GTTACTTGTTCAGGACAAATTTGACCGTCCAATCGTTTGCAACTCCTTCACATACGATCACGCAAGCTTCTCCTGTACTATTCATAAAGAGAAGTCCGCTCCAGTTGGATCAGCTGAAATCCAGATCGCTGTTGGAAAGAGATACTTCGAGAAGACTTGCCTTTCTCGTAAGTTGATTATTCAGGAACTTTTGGATTTAGAATCA------ACGTTTTTCTGTTGAA
i caeRem4.Crem_Contig24 C 0 I 250
s caeSp111.Scaffold548     6686 259 +    67506 TTCTTTGTGATTGACAATGCTAGTCTCCAATCGTCTGATCCTATTGTATATAAGGCTACATCCGAAGAGGAATGCTTAGAAACGTGCACACAAAACAG-------------------------------------------------------------AGACAAGTTCAATCGTCCGATTATTTGCAATTCTTTTACTTATGATCATACTAGCTTCTCATGTACGATTCATAAAGAGAAGTCCACTCCAGTTGGTTCTGCTCAAACGGAAGCAGCAGTtggaaaaagatattttgaaaagaccTGTCTTTCTTGTAAGT------------------------------------------------------
i caeSp111.Scaffold548  C 0 I 6
s caePb3.Scfld02_62      502397 273 -   783054 ttttttgtcatCGACAACGCCAGCTTACAATCATCAGATCCAATTGTTTATAAAGCGACATCTGAAGAAGAGTGTTTGAAGACTTGTACACAGAACAG-------------------------------------------------------------GGACAAATTCAACCGTCCGATTACATGCAATTCTTTCACATATGACCATGCTAGTTTCTCTTGTTCAATCCATCAAGAGAAATCTACTCCAGTCGGCTCTGCATCAATTGAAACTTCTATCGGAAAGAGATACTTTGAGAAAACCTGCATTTCTCGTGAGTT--TAAT-----------TTGATTTTA---------------------------
i caePb3.Scfld02_62     C 0 I 17
s caeJap4.Scaffold17966  120671 315 -   140921 ttttttGTGACTGACAACGCTCAACTCGTTACTGACGATTTTATTGTCTACAAAGCCATATCTGAGGATGAGTGTCTGAAAACATGCTCCCAAAACAGAGTGAGAACAgtaaattttatgaaaatagTTTTG---------------AATTCGTAAACAGGACAAGTTCGAGCGCCCAATCATCTGCAATTCTTTCACTTATGATCATGCCAGTTTCTCGTGTACTATTCAAAAAGAAAAGTCCACTCCTATTGGATCAGGTCAAGTGAGAACATCGCttggaaaacggtattttgaaaaaatctgtTTGACTCGTAAGTA-----------------TTAATATGT---------------------------
i caeJap4.Scaffold17966 I 261 C 0

a score=187495.000000
s ce10.chrX             1312896 407 + 17718866  
s cb4.chrX               105176 395 + 21540570  
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig24  371315 447 +  1162296  
i caeRem4.Crem_Contig24 I 250 C 0
s caeSp111.Scaffold548     6951 357 +    67506  
i caeSp111.Scaffold548  I 6 C 0
s caePb3.Scfld02_62      502687 376 -   783054  
i caePb3.Scfld02_62     I 17 C 0
s caeJap4.Scaffold17966  120986 359 -   140921  
i caeJap4.Scaffold17966 C 0 I 61

a score=-30934.000000
s ce10.chrX             1313303  50 + 17718866 AGTTTTTTGGTT--------------------------------TTTTTTTTTG----CAATG--------------------------T----------------ACAA-------TTTCAA--------ATAAAATTTCAA
s cb4.chrX               105571  71 + 21540570 CGT---------------------------------------AATATTTATAAACCACTATTG--------------------------TTTT----GTGTTA---AAAAGTGCGGATTTTAGAACCAATCATCACCTCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  371762  68 +  1162296 AGTTTTGAGACA-----------------TGAG--------AAAAGCATATAAA----TATTG--------------------------T----------------AAAAACG----TTTCAGAGACCCCAACCAAGACTGAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7308  85 +    67506 AGTTTCCCAATA-----------------TGATTACT-ATCAACTGTATTCCAA----CACTG--Ataacttattt-------------ttctagacGTCCAGCCCAAAACAG----ATAAAG-----------------TAG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503063 123 -   783054 agtttccgaaaaatcagagaaaagttTGTTGATAGTTCCTCAAGTATTCACTAA----AACTGTTATGGCTCATTGAAATCACCTCAGATTcgaaaatcacga---aaaacgC----TTACAGAATCCC---------CTGAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121345  61 -   140921 I

a score=37037.000000
s ce10.chrX             1313353 186 + 17718866 ATTTCAGAGAACGAGCCAACCGTCGAGACT---GAGGAAGTCCAAGAGGAAGTCAGACCAGTAGCTCATGTGCTTATCTCTGAAACGACTCCAAAACC-------AGATTCTCCAGTTGAG---AAGGTTGTTGAGGAAGTTG------GTGAGGAGG-TGAAGCCAGAGATGAAGCCAGAAGAGCAGTTCGATGAGAAGCAAGAG
s cb4.chrX               105642 177 + 21540570 TCTGCTGAAGTT---GCAGCTGA---------CGAAACAGTTGAAGAAGAAATCAAACCAGTTGTGAATAtccaaatctcagaaaccACTCCAAAACC-------AGATGGCCAACTAGAT---AAAGTTGTTGATGAGGtggaaaatgtcgaaaaag-aAACCCCATCCAACAAGtcagaaga------agatggagaacAGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  371830 183 +  1162296 ACCGCCGATGCA---CCAGCTGAGGAAACCCCAGAAACCGTTGAAGAGGAGGTCAAGCCAGTTGTCAACATCCAAATCTCTGAAACTACTCCAAAACC-------GGAAACACCAGTAGAG---AAGGTAGTTGAGGAGACAG-------CGGAGGAG-AAA--CCAGTTGAGAAACAAGAGGAGCCAGTGGAGGAGAAGCAAGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7393 179 +    67506 TCTTTGGAGAAC---C----TGTTGAAACT---GAATCTGCTGAAGATCAAGTGAAACCAATTGctcatattcaaatttcggaAACTACTCCTAAACC-------GAAGTCACTAGTTGAG---AAAGTTACAGAGGAAACTA------TTGCAGGAG-AAAACCCTGTAGAGAACCCGGCTgcggaaattgaaaagaaacaagag
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503186 186 -   783054 ATTTCGGAGACC---CCAGTTGATGACACCCCAGAAATTGTTGAGGCTGAAGCTAAGCCAGTTGCCCACATTCAAATCTCGGAAACCACTCCAAAACCATCTTTGGCAAtgaat-gttgaa---aatgttccaaagaa-------------gcaagaacaacaaccagaggagaaacaagaggagcaagttgaagagaaacaggaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  121406 183 -   140921 ATTCCAGAAGAC------ACTAGTGATGCC---GAAGAGACTGTAGAGAAGGTCAAACCAATTGCGGTTACTCAGATTTCTGAAACCACCCAAAAACC----------AACTTCAGATGAGTCTGCAATTAATGAGGAAACTACAAATGCTGTAGCCC-AAGCTGTGCAAGAAAGCGAAGATGAGTA---TGAAGAGGAGGATGAG
i caeJap4.Scaffold17966 I 61 I 109

a score=4413.000000
s ce10.chrX             1313539 10 + 17718866 GAGACCAATG
s cb4.chrX               105819 10 + 21540570 GACATTACTG
i cb4.chrX              C 0 I 171
s caeRem4.Crem_Contig24  372013 10 +  1162296 GAGAATAATG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7572 10 +    67506 gaGACTAATG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503372 10 -   783054 gagaCaaatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121589 109 -   140921 I

a score=8636.000000
s ce10.chrX             1313549 33 + 17718866 CACAGACTGGAGAGGATGAGGAGGAGTACGGTA
s caeRem4.Crem_Contig24  372023 30 +  1162296 CTGAAactggagaa---gaaggagaatacGGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7582 30 +    67506 CCGAAATTGGAGAA---AGCGGAGAGTATGGTA
i caeSp111.Scaffold548  C 0 I 139
s caePb3.Scfld02_62      503382 30 -   783054 ctggaattgaagaa---gaaggagaatatggta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I

a score=-829.000000
s ce10.chrX             1313582 1 + 17718866 A-
s caeRem4.Crem_Contig24  372053 1 +  1162296 -C
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      503412 1 -   783054 a-
i caePb3.Scfld02_62     C 0 I 19
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I
e caeSp111.Scaffold548     7612 139 +    67506 I

a score=270.000000
s ce10.chrX             1313583 17 + 17718866 GTAGTTTAGTAGTGGGG
s caeRem4.Crem_Contig24  372054 11 +  1162296 GGA------TAGTGGGG
i caeRem4.Crem_Contig24 C 0 I 1036
e caePb3.Scfld02_62      503413 19 -   783054 I
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I
e caeSp111.Scaffold548     7612 139 +    67506 I

a score=0.000000
s ce10.chrX             1313600 693 + 17718866  
e caePb3.Scfld02_62      503413  19 -   783054 I
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I
e caeSp111.Scaffold548     7612 139 +    67506 I
e caeRem4.Crem_Contig24  372065 1036 +  1162296 I

a score=483.000000
s ce10.chrX             1314293 21 + 17718866 AAAAATATACCCAGCCtaaaa
s caePb3.Scfld02_62      503432 18 -   783054 aaaaataaattgag---aaaa
i caePb3.Scfld02_62     I 19 C 0
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I
e caeSp111.Scaffold548     7612 139 +    67506 I
e caeRem4.Crem_Contig24  372065 1036 +  1162296 I

a score=-87.000000
s ce10.chrX             1314314 13 + 17718866 atttaatttaaaa-
s caeRem4.Crem_Contig24  373101 11 +  1162296 ATTTAATTTTA---
i caeRem4.Crem_Contig24 I 1036 C 0
s caePb3.Scfld02_62      503450 13 -   783054 -ataagttttagaA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I
e caeSp111.Scaffold548     7612 139 +    67506 I

a score=29.000000
s ce10.chrX             1314327 1 + 17718866 t
s caeRem4.Crem_Contig24  373112 1 +  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7751 1 +    67506 T
i caeSp111.Scaffold548  I 139 C 0
e caePb3.Scfld02_62      503463 0 -   783054 C
e caeJap4.Scaffold17966  121589 109 -   140921 I
e cb4.chrX               105829 171 + 21540570 I

a score=35357.000000
s ce10.chrX             1314328 132 + 17718866 ttCCAGAAGAC------GAAGAAGTCACCGAAGAAACCACA---GAGGAAGAAGTCACAACAACCGAAGCACCCACCA---CCACCACCACTAC------CGAGGAGCCAACA---------ACCGAAGCCTCGGCTCCAAAACGCATCAAGGCACACC
s cb4.chrX               106000 147 + 21540570 TTTCAGAAGAGGATGGAGATGATGTGACTGAAGAAACCGCT---GTGGAGGAAGTCCCAACCACCTTTTCAACAACTGTGCCAACTACCACCAC------TGAAG---CAATTGTCGAAGAGACCGAGGCTCCAACACCAAATCgtatcaaaaacttga
i cb4.chrX              I 171 C 0
s caeRem4.Crem_Contig24  373113 141 +  1162296 TTCCagaagacgagggagaagagggaaccgaagagaccaccgaagaagaagaagctccAACCACAACTCCAACTACCA---CAACTACCACCAC------TGAAGAGCCAACC---------ACCGAGGCACCAACTCCAAAACGTATCAAGTCTCTCa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7752 137 +    67506 TTACAGAAGACGAATTAGAAGACGTTGTTGAAAATAACGCT---GAGAAAGAAGATGCAACAACCACACCAGCTACTA---CGACCCCGACGAC------TGAAGATCCATTC---------ATAGaagctcaaaaaacgaaa-acatcAAGAAcctta
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503463 136 -   783054 --------GATGAGGGAGAGGAAGTCACAGAAGAGACAGTT---GAGGAAGAGGTCACTACTACTCCAAAGGCCACAA---CAACTACCACAGCAGCAGTTGAAGAAACCACA---------ACTGAAGTTGTAACACCAAAACGCATCAAGAACctta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121589 109 -   140921 I

a score=86750.000000
s ce10.chrX             1314460 130 + 17718866 TTCACAAGAAGATCAAGAAGCACCCAAAGAACTTTGGATCCAAGACTTATGAGATTCTGAAGAAGCAAGAAACTGTCAAGAAGTCAAAGATTGAGTTCCCAGAAAT---TGAAGAGCAA---GAAATCACAGAAGA
s cb4.chrX               106147 126 + 21540570 ttcaaaagaaaatcaagaaacatCCAAAGAACTTTGGTTCAAAAACCtacgaaattctgaagaagcAGAACACCGTGAAGAAACCAAAGATCAACTTCCCAGAAAA---TGAAGATAGTTTGGAGCTCA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  373254 129 +  1162296 ttcagaagaaaatcaaaaaacaccCAAAGAACTTCGGATCAAAGACTTATGAGATTCTGAAGAAGCAAGAGACTGTTAAGAAATCGAAGATCGAAATCccagaaacttttgaagacAGTTTGGAGATTA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     7889 126 +    67506 ttca-aaaaaaattaagaagcATCCAAAGAATTTTGGATCgaaaacttatgaaattttgaaaaagcaaaaaactatgaaaaagtCAATGTTGGAAGTGCCTGAAAC---tgaagagaaatttgaaattac------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503599 127 -   783054 ttcagaagaaaatcaagaaacatcCAAAGAACTTTGGATCTAAGacttatgaaattctgaaaaaacaagagactgtgaaaaaatcaaagttcgaGATCCCAGAGAC---TGAGGAAAACTTCGAGATTAC------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  121698 127 -   140921 TTAAAAAGAACAGTGCAACACACCCAAGAAACTTTGGTTCAAAGACctatgaaattttgaaaaaacaggaaactgtcaaaaaagtgaaaagtgaagtgaTTGAGGCCGAAGAAGATAGCGTAGAAAA---------
i caeJap4.Scaffold17966 I 109 I 55

a score=-15043.000000
s ce10.chrX             1314590  67 + 17718866 CTCTGCGGATTCTTCTAGAGCC---ATTGAGCCACAAGAGCCAGAGGAGGTT-------------------------------------------------------------------------------------------ATTTTAAAA--------TT-------------------------TCCA--------------------GTA
s cb4.chrX               106273 114 + 21540570 --CTGATGACTCGCGGAAATCG---GAAGAGCAACAAGAACCAGAAGAGGTGAGAAGATGTTT--------------------------------------ATGTGAT-----------------------------------GTTATGACT--------TATTAAATTTTGGGAAACTAAACT---TCCAAACCATATC-----------att
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  373383  93 +  1162296 --CCGACGACTCTTCTAAGTCG---GAAGAACCACAGGAGCCAGAAGAGGTG------TGTTTTGGCGGA-------------------------------ACGGAAT-----------------------------------GTTTTTAAT--------TAACA--------GAAAATA-----------------GTT-----------GTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     8015 127 +    67506 tTCCGATGAATCCTTTAAACTG---GAAGATCAACAAGAGCCAGAGGAGGTa------agattt-tccaaaaaaaaac-----------------------aaaaaatc----------------------------------gttttAATA--------TTGAGcctttgaaataaattcttc---tcca------tttttctcagc---AAT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503726 208 -   783054 CTCTGATGAATCCACTAAGTCAGCTGAAGAAACCCAAGAGCTAGAAGAGGTG------AGTTCTATCGAAAAATAAACCGAATTCATCTGATCCCCCGtagaaaaaacctaaaatggactttcaaaatgagcgataccgaaaaattttaacaGAAATCAGCAGAGAACTTAAAGAAAACTCGTCACTTCCAATTTGCATTTTCTTGACTTGACA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  121825  55 -   140921 I

a score=134919.000000
s ce10.chrX             1314657 170 + 17718866 TAATACATATGTTCCA---TTTCCAGACCTACTTCTCCGACTGGTCTGACTGGACTCCATGCACAAAGAGCAACGAGCGACAGGTCCGTAGAAGACGGTGCCTGAACTTGAGAAAATGTCTCGGAGCTTTGATGCAAGTTCAGAACTGCCCAGAGATTATTCCAACAAGCAGT----
s cb4.chrX               106387 173 + 21540570 aaattattaaattaTGTATTCTTCAGACTTACTTCTCGGAATGGTCTGATTGGACTCCATGCACCAAGAGCAACGAAAGACAAGTTCGTAGAAGACGGTGCCTGAATCTTAGAAAATGCCTTGGAGCTCTTATGCAAGTCCAAAACTGTCCAGAAGTCATTCCAACAACTAGT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  373476 173 +  1162296 GTTTTCATAATAGCTCTGTTTTTCAGACATACTTCTCAGAGTGGTCCGACTGGACTCCATGCACCAAGAGTAACGAGAGACAAGTCCGCAGAAGACGTTGTCTAAACCTAAGAAAGTGTCTTGGAGCACTCATGCAAGTCCAGAATTGTCCTGAAATCATTCCAACAACTAGT----
i caeRem4.Crem_Contig24 C 0 I 34
s caeSp111.Scaffold548     8142 169 +    67506 AACCTCGAAATATACG----TTCCAGACCTTTTTCTCCGAATGGTCAGATTGGACACCTTGTACCAAAAGTAATGAAAGACAAGTTCGCAGAAGACGCTGCCTCAATCTACGAAAGTGTTTAGGAGCTCTCATGCAAGTTCAAAACTGTCCAGATATTGTCCCAACTACCAGT----
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      503934 172 -   783054 AAACTCAtaattttcgca-ttttcagaCATACTTCTCAGACTGGTCAGACTGGACTCCATGTACCAAGAGCAATGAAAGACaagttagaagaagaagatgcttGAATCTCAGAAAGTGCCTCGGAGCTCTCATGCAAGTTCAAAACTGTCCAGAAATCATTCCAACCACTAGT----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  121880 172 -   140921 --tattgcattttttc---tttccagGCTTTCTTTTCTGAATGGTCCGACTGGACTCCGTGCACGAAGAGTGAAGAAAGACAAGTTCGCAGAAGACGTTGTCTTAACCTAAGGAAATGTTTGGGAGCACTGATGCAAGTTCAAAACTGTCCAGAAATCGTTCAGAAACCAAGTTAGC
i caeJap4.Scaffold17966 I 55 C 0

a score=-354.000000
s ce10.chrX             1314827 3 + 17718866 GAG--
s cb4.chrX               106560 3 + 21540570 AAG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548     8311 3 +    67506 AAG--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      504106 3 -   783054 AAG--
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  122052 3 -   140921 --GAC
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  373649 34 +  1162296 I

a score=-1014.000000
s ce10.chrX             1314830 2 + 17718866 --TT
s cb4.chrX               106563 2 + 21540570 --TT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      504109 2 -   783054 --TT
i caePb3.Scfld02_62     C 0 I 41
s caeJap4.Scaffold17966  122055 2 -   140921 AA--
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold548     8314 0 +    67506 C
e caeRem4.Crem_Contig24  373649 34 +  1162296 I

a score=412.000000
s ce10.chrX             1314832 5 + 17718866 AAGAA
s cb4.chrX               106565 5 + 21540570 CAAAA
i cb4.chrX              C 0 I 27
s caeJap4.Scaffold17966  122057 5 -   140921 AACAA
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      504111 41 -   783054 I
e caeSp111.Scaffold548     8314 0 +    67506 C
e caeRem4.Crem_Contig24  373649 34 +  1162296 I

a score=452.000000
s ce10.chrX             1314837 18 + 17718866 ATTTGTAaagttttggct
s caeJap4.Scaffold17966  122062 18 -   140921 ACTATTAAATTCTAGACT
i caeJap4.Scaffold17966 C 0 I 5
e caePb3.Scfld02_62      504111 41 -   783054 I
e cb4.chrX               106570 27 + 21540570 I
e caeSp111.Scaffold548     8314  0 +    67506 C
e caeRem4.Crem_Contig24  373649 34 +  1162296 I

a score=0.000000
s ce10.chrX             1314855 363 + 17718866 aagacgaaggcttactttaggcttaggctgaagcttaggcttaggctcaggcctaagcttaggcttaggcttagactaatactgaggcttaggctttagcttaagcttaggcttatacttatgctaagtctttggtttaggcttaggAATTTTCTAATAAAAAAATTGAAAATTGTGAAAGATTCGTGCTTAATCAAAAACTAGCCCCCCTGAGCAGAGCCAATGTATAATAACACGGACTTTCATGATATGATAAACTATGAAAACTGAGCAGTAGCTGAAGTATAAAATCTAGAAAAAATCAGTAAATCCTGTGAGCTCTGTTTCTCTAAAATTCTCAAAATGTTCAAGCGGCCGAAATTT
e caePb3.Scfld02_62      504111  41 -   783054 I
e caeJap4.Scaffold17966  122080   5 -   140921 I
e cb4.chrX               106570  27 + 21540570 I
e caeSp111.Scaffold548     8314   0 +    67506 C
e caeRem4.Crem_Contig24  373649  34 +  1162296 I

a score=631.000000
s ce10.chrX             1315218 16 + 17718866 TGTGGGTCCAACTTCC
s caeSp111.Scaffold548     8314 16 +    67506 TGTGTGTGCAATGTCT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      504111 41 -   783054 I
e caeJap4.Scaffold17966  122080  5 -   140921 I
e cb4.chrX               106570 27 + 21540570 I
e caeRem4.Crem_Contig24  373649 34 +  1162296 I

a score=-956.000000
s ce10.chrX             1315234 11 + 17718866 AAAAAGCTT---TA-
s caeRem4.Crem_Contig24  373683 11 +  1162296 AAAATGCAT---GA-
i caeRem4.Crem_Contig24 I 34 C 0
s caeSp111.Scaffold548     8330 15 +    67506 CAGATGTATTTCGAA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      504111 41 -   783054 I
e caeJap4.Scaffold17966  122080  5 -   140921 I
e cb4.chrX               106570 27 + 21540570 I

a score=273.000000
s ce10.chrX             1315245 1 + 17718866 T
s cb4.chrX               106597 1 + 21540570 t
i cb4.chrX              I 27 C 0
s caeSp111.Scaffold548     8345 1 +    67506 T
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      504111 41 -   783054 I
e caeJap4.Scaffold17966  122080 5 -   140921 I
e caeRem4.Crem_Contig24  373694 0 +  1162296 C

a score=140401.000000
s ce10.chrX             1315246 167 + 17718866 TTTCCAGCTCCACAAAACAACGAGATGATCAGATCAGTTGTATCAGTTGATGGTG------ATGATGAGCCAATTGCCGTTGATAACATTTCAGTTGACTCTGCACCAAGC---AGCATTTTGCCAGTGCTCAACGAGCAAGTCTGGGGACACTGGCAAGGAACTTGTCAGGTAAG
s cb4.chrX               106598 173 + 21540570 CTTTCAGCTCCACAAAACAATGAAATGATTCGATCAATTGTCTCCGCAGATGGAGATGAGTATGATGAGCCGATTGCTGTGGATAACATTTCCGTTGATCCAGTTCCATCC---AGAACTCTCCCAGTGTTGAATGAACAACTTTGGGGACCATGGCAAGGAACTTGTCAGGTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  373694 172 +  1162296 -TTTCAGCTCCACAAAACAACGAAATGATCCGATCTGTGGTGTCAGTTGAGGGAGATGAGTACGATGAGCCAATTGCTGTCGACAACATTTCCGTTGACTCAGTCCCAAGT---CGTCTTCTTCCAGTTCTCAATGAACAGGTTTGGGGACAATGGCAAGGAACTTGCCAGGTGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548     8346 173 +    67506 GTTTCAGCTCCACAAAACAATCAAATGGTCCGATCTGTTGTTTCGGTGAATGGTGACGAGTACGATGAGCCAATTGCTGTTGATAACATTTCAATGGATCCAGTTCCAAGT---CGTATTTTGCCAGTTCTTGACGAACAAGTTTGGGGACAATGGCAAGGAACATGCCAGGTcag
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      504152 176 -   783054 TTTTCAGCCCCACAAAACAACGAGATGGTTCGATCAGTGGTGTCTGTTGATGGAGACGAGTATGATGAGCCAATTGCGGTTGATAATATTTCTGTCGATTCCGCTCCAAGCAAACAACTCTTGCCAGTTCTCAATGAACAAGTTTGGGGACTATGGCAAGGAACTtgtcaagtgag
i caePb3.Scfld02_62     I 41 C 0
s caeJap4.Scaffold17966  122085 173 -   140921 TTTACAGTTCTGCAAAGCCACGAATCTGTGCGTTCTGTTGTCACAGCAGATGGCGACGAGTATGATGAGCCAATCACCGTTGATAACATTTCCGATGATTCAGTTTTTTCC---CGACCAGCACCAGTCATTAATGAGCAAGTTTGGAGTCCATGGCAAGGAACTTGCCAGGCTAG
i caeJap4.Scaffold17966 I 5 I 36

a score=486.000000
s ce10.chrX             1315413 4 + 17718866 ---GATT
s cb4.chrX               106771 4 + 21540570 ---AAtt
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig24  373866 4 +  1162296 ---ATTT
i caeRem4.Crem_Contig24 C 0 I 187
s caeSp111.Scaffold548     8519 7 +    67506 tattttt
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      504328 4 -   783054 ---tttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  122258 36 -   140921 I

a score=-673.000000
s ce10.chrX             1315417 3 + 17718866 CAG----
s caeSp111.Scaffold548     8526 7 +    67506 cgaacaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      504332 3 -   783054 cag----
i caePb3.Scfld02_62     C 0 I 137
e caeJap4.Scaffold17966  122258 36 -   140921 I
e cb4.chrX               106775 8 + 21540570 I
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=696.000000
s ce10.chrX             1315420 52 + 17718866 GAGACCCCGCTTTATT-------ATCAAGTTATCTA---CAAAAAAAATATATTTTTACAAT
s caeSp111.Scaffold548     8533 62 +    67506 aaaaccgcttcttatttcttttcattcaaatagctctcttaaaaaaagtttttgttcacaat
i caeSp111.Scaffold548  C 0 I 226
e caePb3.Scfld02_62      504335 137 -   783054 I
e caeJap4.Scaffold17966  122258 36 -   140921 I
e cb4.chrX               106775  8 + 21540570 I
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=0.000000
s ce10.chrX             1315472 889 + 17718866  
e caePb3.Scfld02_62      504335 137 -   783054 I
e caeJap4.Scaffold17966  122258  36 -   140921 I
e cb4.chrX               106775   8 + 21540570 I
e caeSp111.Scaffold548     8595 226 +    67506 I
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=191.000000
s ce10.chrX             1316361 2 + 17718866 AG
s caeSp111.Scaffold548     8821 2 +    67506 AG
i caeSp111.Scaffold548  I 226 C 0
e caePb3.Scfld02_62      504335 137 -   783054 I
e caeJap4.Scaffold17966  122258 36 -   140921 I
e cb4.chrX               106775 8 + 21540570 I
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=-419.000000
s ce10.chrX             1316363 26 + 17718866 TTTTTCAACTCCTATAAAACTATAAA
s cb4.chrX               106783 23 + 21540570 tttttcgattatcAAACCAATGT---
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold548     8823 24 +    67506 -TTGTCAAAC-TCAAAACACTCTTTA
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      504335 137 -   783054 I
e caeJap4.Scaffold17966  122258 36 -   140921 I
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=136.000000
s ce10.chrX             1316389 2 + 17718866 AA
s caeSp111.Scaffold548     8847 2 +    67506 AC
i caeSp111.Scaffold548  C 0 I 14
s caeJap4.Scaffold17966  122294 2 -   140921 AA
i caeJap4.Scaffold17966 I 36 C 0
e caePb3.Scfld02_62      504335 137 -   783054 I
e cb4.chrX               106806 0 + 21540570 C
e caeRem4.Crem_Contig24  373870 187 +  1162296 I

a score=121490.000000
s ce10.chrX             1316391 220 + 17718866 TTACAGCCATTCGCATCTTCCCAGCCATGCAACAATGGATTCATGATCGGATTCGAATCACGCGAGTGCATCGCCAAGGACCCCGCTCAGTGTGAAGGACCATTCTTCAGATACTGCCAACATTCTTGTTAACTCCACTAC-CGCTTTTAATTGACCA------------------------CTGACTGC-AATTTCTCCCACGTGTATTTT--GTAATCCaaattttaatattaatggttt--tcaatt
s cb4.chrX               106806 209 + 21540570 TTTCAGCAATTCGCCTCTTCCCAACCATGCAACAACGGTAGCATGATTGGATTTGAATCTCGTGAATGCATTGCTAAGGATCCAGCACAATGTGAaggaccatttttcagatactgTACTCTCACTTgttaataatttc------aaacaattgaTCA------------------------ATGACTCT--TTCTGTCCAACGTGTATTCC--GTTATCCAAA--TTA-----ATTAatgttttcactt
i cb4.chrX              C 0 I 2024
s caeRem4.Crem_Contig24  374057 205 +  1162296 tttcagcaattcgcCTCTTCCCAACCATGCAACAACGGCAGCATGATTGGATTCGAGTCTCGTGAATGCATTGCCAAGGACCCAGCTCAATGCGAGGgaccatttttcagatactgTACTCTTTCCTGTTAATTAC------------CATTCAATCA------------------------TTGACCAG--ATTTTCTCAACGTGTACTTT--GTAATccaaatttta-----agtttttttttcacta
i caeRem4.Crem_Contig24 I 187 I 13
s caeSp111.Scaffold548     8863 220 +    67506 TTTCAGCAATTTGCGTCTCATCAACCATGTAACAACGGTAACATGATTGGGTTTGAATCTCGTGAATGCATTGCCAAGGATCCTGCTCAATGCGAAGGTCCATTCTTCCGATACTGCACACTTAATTGTTAAGCATTTCT----TGATTCACCAATCA------------------------TGGATCAT-ATTTTTTACGACGTGTATTTTCCCTACTTCCAATTTTG-AAGGGATAGTTTCATCAATG
i caeSp111.Scaffold548  I 14 I 13
s caePb3.Scfld02_62      504472 221 -   783054 tttcagcaattcgCTTCCTCTCAACCTTGTAACAACGGAAGCATGATTGGATTCGAGTCCCGCGAATGCATTGCCAAGGACCCCGCTCAATGCGAAGGACCATTCTTCAGATATTGCACTCTCACCTGttaaatttatga----aaaaaaaatgatca------------------------tggACCACAACATTCAATAACGTGTATCTTCGGCAATTCCAAATtaa-ttttaatggctttttcaatg
i caePb3.Scfld02_62     I 137 I 11
s caeJap4.Scaffold17966  122296 243 -   140921 TTTCAGCAATTCGCTTCTTCTCAACCATGCAACAATGGAAACATGATCGGGTTTGAATCTCGTGAATGTATTGCTAAGAATCCAACGCAGTGCGAAGGACCATTCTTCCGGTATTGCACACTTCaatgttaagtataaattatttaaatagttaattaatttatttaaaaattttcaatgtttttaccgt--tattttCCCACGTGTATGTTTCCAAGTTGGATTTTTC-TTGGAATTATTT----AATA
i caeJap4.Scaffold17966 C 0 C 0

a score=-8950.000000
s ce10.chrX             1316611 30 + 17718866 aataaagttattt---------taatatt----------ttttGTTTGA----
s caeRem4.Crem_Contig24  374275 27 +  1162296 ---AATGTTAATT---------TATTAAA----------TTCGCTCTGA----
i caeRem4.Crem_Contig24 I 13 C 0
s caeSp111.Scaffold548     9096 44 +    67506 ---AATAAAATTTCCCAATAACAATAACaa--tcatatatttttttcgt----
i caeSp111.Scaffold548  I 13 C 0
s caePb3.Scfld02_62      504704 26 -   783054 ---aatattattt---------aataaaa-----------tgtttttga----
i caePb3.Scfld02_62     I 11 C 0
s caeJap4.Scaffold17966  122539 30 -   140921 -----------------------ATAAAaggttttgttcttttttttaattaa
i caeJap4.Scaffold17966 C 0 I 2138
e cb4.chrX               107015 2024 + 21540570 I

a score=-2450.000000
s ce10.chrX             1316641 3 + 17718866 AGT------
s caeRem4.Crem_Contig24  374302 3 +  1162296 AGT------
i caeRem4.Crem_Contig24 C 0 I 1609
s caeSp111.Scaffold548     9140 9 +    67506 gtttgaaag
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      504730 9 -   783054 ttttctcag
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I

a score=-281.000000
s ce10.chrX             1316644  9 + 17718866 ATTTCAGAA-
s caeSp111.Scaffold548     9149 10 +    67506 ttttttagaA
i caeSp111.Scaffold548  C 0 I 957
s caePb3.Scfld02_62      504739  9 -   783054 ttttcacaa-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeRem4.Crem_Contig24  374305 1609 +  1162296 I

a score=362.000000
s ce10.chrX             1316653 40 + 17718866 ATATTGTGAAAATTCTAGAAACTTTTTTTACGCAAGACAA
s caePb3.Scfld02_62      504748 36 -   783054 at----taaacgatggaaaaaatattttcgaacaagagaa
i caePb3.Scfld02_62     C 0 I 1819
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548     9159 957 +    67506 I
e caeRem4.Crem_Contig24  374305 1609 +  1162296 I

a score=0.000000
s ce10.chrX             1316693 3144 + 17718866  
e caePb3.Scfld02_62      504784 1819 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548     9159  957 +    67506 I
e caeRem4.Crem_Contig24  374305 1609 +  1162296 I

a score=758.000000
s ce10.chrX             1319837 32 + 17718866 TGTTTGTTTGTCTCCGGAGAGGCGGTGGACGC
s caeRem4.Crem_Contig24  375914 21 +  1162296 TGTTTGTTTGTC--CGGAGGGGC---------
i caeRem4.Crem_Contig24 I 1609 C 0
e caePb3.Scfld02_62      504784 1819 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548     9159 957 +    67506 I

a score=0.000000
s ce10.chrX             1319869 7 + 17718866 TGACGAA
e caePb3.Scfld02_62      504784 1819 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548     9159 957 +    67506 I
e caeRem4.Crem_Contig24  375935 0 +  1162296 C

a score=10558.000000
s ce10.chrX             1319876 93 + 17718866 GGGAGGCCTCCCTG-AAAGCGATAACAACCGTACTTGTTGCGGCTGCGTCTCTTCGGCGGCCAGCGGCCCCTCGTCTTCGCTCATACT--CTGCTT--
s caeRem4.Crem_Contig24  375935 86 +  1162296 ------CCTCCCTG-AAAACGACGACAACAGTATTCATAACGTCTGCGtctcggct-ctcttgactctttctttctctcgtttatact--ctcttt--
i caeRem4.Crem_Contig24 C 0 I 15
s caeSp111.Scaffold548    10116 89 +    67506 GAGGGGCCTCCCTGAAAAACGACGACAACAGTACTCGTTGGGTCTGCGTCTC-----CTCGT--TCTTCGATCTCTCTTGTTCGTTCG--CTCTTCCT
i caeSp111.Scaffold548  I 957 C 0
s caePb3.Scfld02_62      506603 98 -   783054 AGGGGCCCTCCATGAAAAACGACGACAACAGTACTAGtaatgtctgcgtctcaatAACTGGTAGTACTTGCTCACCCTCAACACCCCATCCTCATACT
i caePb3.Scfld02_62     I 1819 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I

a score=-103.000000
s ce10.chrX             1319969 14 + 17718866 CCCGGGGGGTCGAC
s caeSp111.Scaffold548    10205 14 +    67506 CTATGCGTCGCACC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      506701 14 -   783054 CTCTGGGTGCCCCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeRem4.Crem_Contig24  376021 15 +  1162296 I

a score=4634.000000
s ce10.chrX             1319983 145 + 17718866 -------------GCTGCAACACACACGCGCGCACCGAGGCACTGCGCGGAACG---------------------------------GCCGAGACGCAGAAACGCACACAGACTTGCCTTTCGTCTAACACTTATCAAACGCT-AGGCAATTGTC-----TGTGTTGGTTTTACCGTCGGTTTTTC------------------CTTGCTTTTTT
s caeRem4.Crem_Contig24  376036 199 +  1162296 -------------ACTGCAACACACATAGAGGGAATAACagagagaatagagagagagactcagagagaaagagtaaaaagggacagagagagagagagaaaagagggaCACTCTTCCTTTCGACTAACACTAATCAAACGCA-AGGCAATCGTCAACAGTGTGTTGGttttgc--ccaattttttgTGTGTCCGTCCTTCTATTCAGCCCGTTT
i caeRem4.Crem_Contig24 I 15 C 0
s caeSp111.Scaffold548    10219 118 +    67506 CTTTGCCAGTCTAACTACGAC------------------------------------------------------------------AGCACGAGAG-----------ACTCTCCGCCATTCGTCTAACACTAATCAAACGCaaagaaaattgtcaacagTGTGTTAGTTCTGT--GCGATCTCTA------------------TTTTCCCTTTT
i caeSp111.Scaffold548  C 0 I 1692
s caePb3.Scfld02_62      506715 119 -   783054 CT-------TCTAACTGCAAT------------------------------------------------------------------TGcaatagagagaaagagggaaagAGACGTCTCTCGTCTAACACTAATCAAACGCAGAGACAACTGTCTGCAGTGTgttcggttctt--tcgttttaca---------------------accttttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I

a score=-234.000000
s ce10.chrX             1320128 32 + 17718866 CCGAGGACTTCCTTTTTTTCCCAATTTTCTTT--
s caeRem4.Crem_Contig24  376235 32 +  1162296 -TTAGGTTCTCTCCTTGTTCACCACTCTTTTTT-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      506834 32 -   783054 --tggatcgttctccagttttcatctttttcttt
i caePb3.Scfld02_62     C 0 I 1753
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=134.000000
s ce10.chrX             1320160  8 + 17718866 G---ATTTCAA
s caeRem4.Crem_Contig24  376267 11 +  1162296 GGATGTTTCAA
i caeRem4.Crem_Contig24 C 0 I 1695
e caePb3.Scfld02_62      506866 1753 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=0.000000
s ce10.chrX             1320168 1946 + 17718866  
e caePb3.Scfld02_62      506866 1753 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e cb4.chrX               107015 2024 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I
e caeRem4.Crem_Contig24  376278 1695 +  1162296 I

a score=389.000000
s ce10.chrX             1322114 40 + 17718866 CAAAAATG-----AAAAAAAAAAACTTGTAGAATA---ATTTTCAAAA
s cb4.chrX               109039 48 + 21540570 CAGAAATGCCGTAAACAAGAAATTCTTATCGATTCCACATTTTcatct
i cb4.chrX              I 2024 C 0
e caePb3.Scfld02_62      506866 1753 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e caeSp111.Scaffold548    10337 1692 +    67506 I
e caeRem4.Crem_Contig24  376278 1695 +  1162296 I

a score=210.000000
s ce10.chrX             1322154 7 + 17718866 TTTTATT
s cb4.chrX               109087 7 + 21540570 tcatatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  377973 7 +  1162296 TTCCGTA
i caeRem4.Crem_Contig24 I 1695 C 0
e caePb3.Scfld02_62      506866 1753 -   783054 I
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=4653.000000
s ce10.chrX             1322161 52 + 17718866 TTCCAGACGCTCAACTTAACACCAACAGCAAGTGAATCGGAGAACAGCTTAT
s cb4.chrX               109094 50 + 21540570 tttcagaaactcagtcTTCAAtcaacaactacagtatcaAAACACAATTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  377980 47 +  1162296 TTTCAGAAACTCGACCTCACACCCACA---ACAGTGACCGAACACAGCCT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      508619 47 -   783054 TTCCAGAGGCTGGATTTCTCGACAACA---ACCGTCACCGAGCTGAGCAC--
i caePb3.Scfld02_62     I 1753 C 0
e caeJap4.Scaffold17966  122569 2138 -   140921 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=30489.000000
s ce10.chrX             1322213 115 + 17718866 CC----CCAGTCACCGCCGAAGATCTCATAGCTAAAAGCATTAAAGAAGGATGTCCGAAGAGAACTTCCAACGACTTCATGTTTCTTCAGAGTATGGGCGAAGGAGCCTACAGCCAGGT
s cb4.chrX               109144 111 + 21540570 --------GATGAAAGCACAAGAACTGATAACACAAACCATCCAAGCGGGATGTCCGAAAAGATCGCCGAGtgatttcacatttttaacTAGTCTTGGCGAGGGTGCTTACAGTCAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  378027 111 +  1162296 --------AATGTGTGCTCAGGACCTTATCGATCAGACTATACGAATGGGATGCCCAAAACGGAATGCCAACGATTTCATGTTCTTTCAGAACATAGGCGAAGGTTCTTACAGTCAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      508666 111 -   783054 --------GGACGCCGCTCAGGATCTGATAGATCAATCTATCAGGCTGGGATGTCCAAGGAAGACGCCCAATGATTTTGTCTTCTTGGCAAACATTGGAGAAGGTGCATACAGCCAAGT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  124707 119 -   140921 CCACAGTCGGCGACTGCGCAGGAGTTGATAACAAGAACATTCAGCGAAGGATGCCCACAAAGAAATGCGAACGATTTCAAGTTCATTCGCGGGCTCGGCGAAGGAGCATATAGCAATGT
i caeJap4.Scaffold17966 I 2138 I 20
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=995.000000
s ce10.chrX             1322328 4 + 17718866 TGGT
s cb4.chrX               109255 4 + 21540570 AAGT
i cb4.chrX              C 0 I 340
s caeRem4.Crem_Contig24  378138 4 +  1162296 GAGT
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62      508777 4 -   783054 AAGT
i caePb3.Scfld02_62     C 0 I 28
e caeJap4.Scaffold17966  124826 20 -   140921 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=452.000000
s ce10.chrX             1322332 84 + 17718866 GAACGAGGAAAT--TTCCAGAAATGTGTGCAACTAGTATCA----GAGTACAAGGAAAA---GCTTGGAAAATACTCGGAATGCCTGAATTAG
s caeRem4.Crem_Contig24  378145 90 +  1162296 GTAAAAGGGGTTTGTTTCAGGAAAGATGACAAATACAATAAAGTTGAATacgaaaaaaacatgttttggaGAGA---AGAACAGCGGAATTAG
i caeRem4.Crem_Contig24 I 3 I 528
e caePb3.Scfld02_62      508781 28 -   783054 I
e caeJap4.Scaffold17966  124826 20 -   140921 I
e cb4.chrX               109259 340 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=0.000000
s ce10.chrX             1322416 1927 + 17718866  
e caePb3.Scfld02_62      508781   28 -   783054 I
e caeJap4.Scaffold17966  124826   20 -   140921 I
e cb4.chrX               109259  340 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I
e caeRem4.Crem_Contig24  378235  528 +  1162296 I

a score=63.000000
s ce10.chrX             1324343 16 + 17718866 AAAACAAGC-TTCCAGT
s caeJap4.Scaffold17966  124846 17 -   140921 aacaCAAACGTTTTATg
i caeJap4.Scaffold17966 I 20 C 0
e caePb3.Scfld02_62      508781 28 -   783054 I
e cb4.chrX               109259 340 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I
e caeRem4.Crem_Contig24  378235 528 +  1162296 I

a score=754.000000
s ce10.chrX             1324359 8 + 17718866 AAAACCCT
s caeRem4.Crem_Contig24  378763 8 +  1162296 aaaaatat
i caeRem4.Crem_Contig24 I 528 C 0
s caeJap4.Scaffold17966  124863 8 -   140921 gaaacttt
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      508781 28 -   783054 I
e cb4.chrX               109259 340 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=209.000000
s ce10.chrX             1324367 4 + 17718866 AATA
s caeRem4.Crem_Contig24  378771 1 +  1162296 ---a
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62      508809 4 -   783054 AACA
i caePb3.Scfld02_62     I 28 C 0
s caeJap4.Scaffold17966  124871 4 -   140921 aatt
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX               109259 340 + 21540570 I
e caeSp111.Scaffold548    10337 1692 +    67506 I

a score=132761.000000
s ce10.chrX             1324371 210 + 17718866 TTCCAGGTATTCCGATGTCGCGAAGTGGCAACAGATGCGATGTTCGCCGTCAAAGTGCTCCAGAAGTCGTACCTCAACCGCCATCAAAAAATGGACGCAATCATTCGCGAGAAGAATATCTTAACATACCTGTCACAAGAATGCGGTGGTCATCCGTTTGTCACACAGCTCTACACACATTTTCACGACCAGGCTAGAATTTGTGAGTTT
s cb4.chrX               109599 210 + 21540570 TTTTAGGTATTCCGATGCAAAGAAAATGAGACTGATGCTGCTTTTGCCATCAAAGTTCTTCAAAAAGATCATCTCTTGCGACACGACAAAATGGACGCTATCATTcgtgaaaaaaacattcttctTTATTTGACACAAACATGCGGAGGTCATCCGTTCATTACTCAACTCTACACGTTCTTTCACGACTCGGCGCGCATTTGTAAGTTT
i cb4.chrX              I 340 C 0
s caeRem4.Crem_Contig24  378775 210 +  1162296 ttataggttttcCGCTGCCGGGAAGTTGATACTGATGGAGTTTTCGCTATCAAAGTTCTTCAAAAGGCTCATCTCGAAAGACATCAGAAGATGGAGGCCATCGTTCGTGAGAAGAACATCCTGACGTATATTACTCAGGAATGTGGAGGACATCCATTCGTCTCTCAAATCTACACTCATTTTCATGACCAAGCTAGAATTTGTGAGTTT
i caeRem4.Crem_Contig24 I 3 I 574
s caeSp111.Scaffold548    12029 208 +    67506 TTCTAGGTATTCCGATGTCGTGAGCTCAATACGGACGCGGAGTTTGCTGTGAAAGTGCTTCAAAAAGCTCACCTTAATCGACACCAGAAATTAGATGCTATTgttagagagaaaaacattctTAACTATTTAAATCAAGACTGCGGAGGACACCCATTTGTCACACAGTTATACACTTTCTTTCATGATGAGTCCAGAATTTGtgag--a
i caeSp111.Scaffold548  I 1692 C 0
s caePb3.Scfld02_62      508813 210 -   783054 TTTTAGGTATTCCGCTGTCGTGAAGTTGACACCGATGCGATATTTGCAGTTAAAGTGCTCCAGAAAGCACATCTCACTCGACACAATAAAACTGATGCAATTGTCAGAgagaagaacattttgaactaCTTGACTCAAGAATGCGGTGGACATCCATTCATCACACAGCTCTACACTCATTTTCATGACCAAGCACGCATTTGTGAGTTG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  124875 207 -   140921 ttttaggTTATCCTTGGCCAAGAAGTGGTTTCCGGTGCGGAATTTGCAATAAAAGTTATTCAAAAAAGtcatttaattaaaaatcaaaagatgGATGCTATAGCTCGCGAGAAAAACATATTGAACTATTTGACTCAAAAATGCCGGTCGCATCCATTCATCTCTCAACTTTACACATCTTTTCATGATCATACTCGAATTTgtaag---
i caeJap4.Scaffold17966 C 0 C 0

a score=-18245.000000
s ce10.chrX             1324581 87 + 17718866 TTTCCAGCGCCAAGGTTCTTTTCTGAACCCATCAAAATCCACTTGTGATCATTTTATTCCAATAAAAACGTCAACTTAA---AAAAAAAA
s cb4.chrX               109809 32 + 21540570 -------TGCTA--GTCGTTATC--------------------------------------------ACGTAATATTTG---TGCAAA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    12237 28 +    67506 ------------------atttg--------------------------------------------aagaacAGTTTCCCGGAGAACCG
i caeSp111.Scaffold548  C 0 I 1
s caePb3.Scfld02_62      509023 25 -   783054 ------------------TTTTC--------------------------------------------ATGCGAAGTTTT---AATAGACa
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold17966  125082 26 -   140921 ------------------------------------------------------------aagaagaaaatcaattttc---actaaaa-
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  378985 574 +  1162296 I

a score=194373.000000
s ce10.chrX             1324668 357 + 17718866 TTAAACCTCAATTAATATTCAGATTTCGTGATCGGACTTGTTGAAAATGGTGATCTTGGCGAGTCGCTGTGCCATTTTGGATCATTCGACATGCTCACCTCAAAATTCTTTGCCTCGGAAATCCTCACCGGACTGCAATTCCTACACGACAACAAAATTGTGCACAGAGACATGAAGCCGGACAATGTGCTCATCCAGAAAGACGGTCACATTCTCATCACAGATTTTGGAAGTGCCCAGGCGTTTGGCGGTCTCCAACTGTCACAGGAGGGCTTTACGGATGCGAATCAGGCAAGCTCGCGATCTTCGGA---TTCTGGATCGCCGCCGCCAACTC---GATTCTATTCGGATGAGGAGGGT
s cb4.chrX               109841 340 + 21540570 -----------------TTCAGACTTTGTGATGAACCTTGTGGAAGCTGGAGACTTGAGCGAGTCACTGAGTCACTTCGGCTCATTCGATTCTGCAACTACTAAATTTTTTGCTTCGGAAATTTTAGTTGGACTCCAATTTTTGCACGACCACAACATCATACATCGTGACTTAAAGCCTGAAAATGTCCTCATTCAGCAGAACGGACACATCTCCTTAGGCGATTTTGGCTGCGCTCAAGCCTTCGGAGAACTTGTTTTGTCGCAAACTGGCTTTTCAGATGATGATCAAGCCAGTTCAAAACTTTCGGA--CTCCCCATTTTCCACAGCCAAA--GATGA--TTATTACAGAGAACAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  379559 358 +  1162296 TTAA--CcccccattttttcagattttgtgatGAGTCTCGTGGAAGGCGGTGACTTGGGAGAGTCTCTATGTCATTTTGGATCGTTCGACCTCCTGACTACCAAATTCTTTGCTTCGGAAATTCTCTCTGGTCTTCAATTCTTGCACGACCACAAAATTGTTCATCGTGACATGAAGCCAGAGAACGTTTTAATACAACGCAACGGACACATCATGATTGCTGACTTTGGAAGTGCTCAAACCATCGACGGATTGGTTTTATCCCAGGAGGGATTCACTGAGGAGAACCAGGCTAGCTCCAGATCATCGGA---TTCCGGCTCGCCGCCGCCAAATCAAAGATTTTACTCCGACGATGAAGGT
i caeRem4.Crem_Contig24 I 574 C 0
s caeSp111.Scaffold548    12266 353 +    67506 ----------atggtttttcagatttcgtAATGGGTCTCGTTGAAAATGGTGATCTGGGCGAGTCACTATGCCACTTCGGATCTTTTGACCTGGTTACTACTCGtttttttGCATCTGAAATTCTCGCCGGACTTACGTTCCTTCATGATCATAAAATTGTTCATCGAGACGtgaaacctgaaaatattcTCATCCAACGTGACGGACATACTCTAATTGCCGATTATGGAAGTGCTCAAGCAGTGGATGGATTGATGTTATCTCAAGAAGGCTTCACCAAGGAGAATCAAGATACAACAACATCATCAGAGTCTGTTGATTCCCCTCCAGCGACTCAAAGATACTATTCTGAAGATGAAGGT
i caeSp111.Scaffold548  I 1 C 0
s caePb3.Scfld02_62      509049 353 -   783054 ----------aatgtttttcagatttcgtgATGGGTCTTGTGGATGGTGGAGATTTGGGTGAATCGTTATGCCACTTTGGATCTTTTGATCTTCAAACTACCAGATTTTTCGCTTCGGAAATTGTTTCCGGACTGCAATTCCTACACGACCACAAAGTTGTTCACCGTGATATGAAACCAGAAAACGTGCTCATACAGCGGACCGGACACACTTTGATTGGTGACTTTGGAAGCGCTCAAACCTTCGACGGGCTCGTTTTGTCGCAGGAAGGATTCAACGAGGACAATCAGACTACCTCGAGATCATTAGACTCTGAAGAGTCACCACCACCAAGACACAAATATTATTCTGAGGATGAAGGT
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold17966  125108 352 -   140921 -----ttaaaatttttttaaagattttgtTATGGAACTAGTAGAAGGAGGTGATTTGAGCGATTCTCTTTGCCATTTTGGCTCATTCGATCTTCCAACAACCAAATTTTTCGCTTCCGAAATTTTAAGTGGACTCAAATTCCTTCATGACCATTATATTGTTCACCGGGATATGAAGCCAGAgaatattttgataaaaatggaTGGTCACGTGGTGATTGCCGATTTCGGAAGTGCTCAAGCAATAAATGGTCTTACTTTGCCTTCTGAAGAATTCACTGACGAGAATCAAACGAGTTCCGGTTCGTCAGA---CTCTAGATCACCGTCTCCACTGC---GTTATTATTCGGATGACGAAGGT
i caeJap4.Scaffold17966 C 0 I 1180

a score=-6402.000000
s ce10.chrX             1325025 13 + 17718866 AAG----GTTTTCGGAA
s cb4.chrX               110181  8 + 21540570 TTG-----T----GCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  379917  4 +  1162296 AGT-----T--------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    12619 17 +    67506 TAgcaattttgtaaaaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      509402 12 -   783054 GGG-----Ttgtcaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  125460 1180 -   140921 I

a score=49743.000000
s ce10.chrX             1325038 138 + 17718866 ATTT--------------------------GACTGAAACAATTTTTG---------------CCAGTTCCAGAAGAGAACACTGCTCGACGTACCACATTTGTTGGAACTGCTCTCTACGTGAGCCCGGAGATGCTAGCTGACGGAGATGTGGGACCACAGTAAGC----TCCGATTC--------TTTG-------T
s cb4.chrX               110189 148 + 21540570 A-----------------------------AAATCATTCGACCTATG---------ATCCTTTCACTTGCAGAAGAAGGTTCTGAACGACGTACTACATTTGTTGGAACTGCTCTTTATGTCAGCCCCGAAATGCTGTCGGATGGAGATGTTGGACCTCAGTATGT----TTTAAAAT--------GCTATTTTAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  379921 156 +  1162296 ------------------------------AACTCCAACTGTCTATGTATTGctgaaatgttgtttttttagaagaaaacaCGGCTCGTCGTACTACATTTGTTGGAACTGCTCTCTACGTTAGCCCGGAAATGCTAGCCGATGGAGATGTTGGAGTACAGTAAGT----TTCAAAAC--------ACCAAGACACCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    12636 181 +    67506 attagTTAGCTGTCTTAAATCGCACAATCCAATTGGTTCgcagttt-------------ttttgattttcagaggaaCACAATACTAGGCGCACAACATTTGTTGGGACAGCACTCTATGTCAGTCCTGAAATGCTAGCCGATGGAGACGTTGGACCACAGtaagt----tcaaaaacttgTAGGGTTTTCTCCGGCA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      509414 137 -   783054 a---------------------cagaa---aactgattctgactttt-----------gtttttcatttcagaagaaagCACTGCTCGCCGTACCACGTTTGTCGGAACCGCTCTTTATGTTAGTCCGGAAATGTTAGCAGATGGTGATGTAGGACcacagtaagt----t---------------tttt-------a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  126640 133 -   140921 --------------------------ATTTAgcttacaaaatttttt-----------------------agaagaaACCATGGCTCGTCGTACGACTTTTGTAGGAACTGCACTCTACGTGAGTCCAGAAATGCTCACTGATGGCGATGTTGGGGCTCAGTATGTGTcctcaattat--------tttt--------
i caeJap4.Scaffold17966 I 1180 I 26

a score=-4240.000000
s ce10.chrX             1325176 28 + 17718866 AGAATGTCAAATT-------TAACAGTTGGATTTC
s cb4.chrX               110337 17 + 21540570 Aacattattcaat------------------tttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  380077 31 +  1162296 AGAATCTTTCAATTCaacgaaaaata----atttc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    12817 34 +    67506 AATGTTACtcaat-tatcaaaaactattcgaTTTC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      509551 32 -   783054 cAAGTAATGAAAT-CTTC--AAtctattttcttcc
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  126773 26 -   140921 I

a score=119071.000000
s ce10.chrX             1325204 173 + 17718866 AGAACCGACATTTGGGGATTGGGATGTATCCTTTTCCAGTGTCTAGCCGGACAGCCACCATTCAGAGCCGTCAACCAGTACCATCTTTTGAAAAGAATCCAGGAGTTGGATTTCTCGTTCCCAGAAGGATTTCCAGAGGAAGCGTCGGAAATTATCGCAAAGATTTTGGTAGG
s cb4.chrX               110354 173 + 21540570 agaaccgaCATCTGGGGACTAGGTTGTATCATCTATCAGTGCCTGTCAGGACAGCCACCGTTCCGTGCAGTAAACCAATACCACctcatgaaaaaaatcaaaaatgccGAATTGATGTTCCCTGAAGGTTTTCCAAAAGATTTGCAAAAGCTGGTTGCTAGCATTTTGGTGCG
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig24  380108 172 +  1162296 agaaccGACATCTGGGGATTGGGATGCATTATGTTCCAATGTCTAGCTGGACAACCGCCATTCCGTGCTGTCAACCAATACCATTTACTCAAAAGAATTCAGGAGCTAGATTTCTCTTTCCCAGAAGGATTCCCGGAAATCGTCGAAGAAATAATTGGCAGAATCCTTGTAG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    12851 173 +    67506 AGAACCGATATCTGGGGACTGGGATGTATTATGTTCCAATGTTTGGCAGGACAACCACCATTTCGAGCCGTGAATCAATATCACTTACTAAAAAAGATCCAAGATTTGGATTTTTCCTTCCCAGAAGGGTTTCCGGAAATAGctcagaaaataattgaaaaaattttggtgag
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      509583 173 -   783054 agaactGATATCTGGGGTCTCGGATGTATTATGTTCCAATGTTTGGCTGGACAACCGCCATTCCGAGCTGTCAATCAGTATCACTTGCTGAAGAGAATCCAGGAGTTGGATTATACATTCCCTGAAGGATTTCCTGATGAAGCAAAggaaataattggaaaaatactGGTAAG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  126799 173 -   140921 agaactGATATCTGGGGACTAGGATGcattattttccaatgtttGGCCGGACAACCACCGTTTCGCGCTGTCAACCAATTTCATCTTTTGCGGAAAATTCAAACACTTGATTTCACTTTTCCGGAAGGTTTTCCACCGCACGCAATTGACGTTCTTCAGTGCATTTTGGTAct
i caeJap4.Scaffold17966 I 26 C 0

a score=-4477.000000
s ce10.chrX             1325377 31 + 17718866 TTGACATGAAAC-TTTAAAAACTGAATACGTA----------------
s caeSp111.Scaffold548    13024 32 +    67506 atgaaattgaatccAACGAAGTTGATAACGCT----------------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      509756 31 -   783054 TATGGTTTGAAT-AGGCAAAacttatcaaatt----------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  126972 37 -   140921 ------ttaaac-----aaaacaaaaaacaatttttcctgGTTGTAAC
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX               110527 27 + 21540570 I
e caeRem4.Crem_Contig24  380280  0 +  1162296 C

a score=105092.000000
s ce10.chrX             1325408 258 + 17718866 ATTTTCAACTTACAGGTGCGCGACCCGAGTACCCGTATCACCAGTCAAGAACTTATGGCTCACAAGTTTTTTGAAAACGTTGACTGGGTGAACATTGCAAATATCAAGCCACCAGTCCTGCACGCCTACATTCCAGCCACATTTGGCGAGCCGGAGTACTACTCTAACAT------TGGGCCTGTCGAGCCGGGACTTGATGATCGTGCCTTGTTCCGTTTGATGAATTTGGGAAATGATG---CTAGCGCATCACAGCCATCAACG
s cb4.chrX               110554 255 + 21540570 atttttaaatttcagttaGTTGACCCTAATAATCGCATCACTCGTGAAAAACTGATGGATCATCAATTCTTCCATGATGTCGATTGGGAAAACCTTCTCACGGCAACGCCACCTGTACTTCATGCTTACTGTCCTGCCACGTTTGGAGATCAAGAATATTACTCCACTGT------CGATGGAATCGAACCAGTTTTTGATGATCGTG--TCGCGCCGcgta----atttgaatttcgaaaatcagagTACTTCGCAACCTTCAACG
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig24  380280 242 +  1162296 -------------------CCAACCCGAAGACCCGTATCACCAGCGCCGAGCTAATGGTCCATCCGTTCTTTGAAGATGTCGACTGGAAGAATATTGCCAACGCAAAACCTCCAGTTTTACACGCCTACTGTCCGGCAACCTTTGGAGAGCCGGAGTACTACTCTAATAT------CGATTCAGTCGAGCCAGGACTCGATGAACGTGCTCTATACCGACTGATGCATTTGTCCCATGAGACTGGAAGTGCTTCCCAGCCATCCACG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    13056 257 +    67506 ----ACAATTTACAGTTGACTGATCCTAAGGCTCGTATTACTGGCAAACAAATGATGGATcataagttttttgaaggcattaattggaaaaacatTGCCTCTGCTGAGCCACCAGTGCTTCATGCTTACTGCCCCGCAGGCTTTGGAGAGCCAGAGTATTACTCGAACAT---AACTGAGCCAATTAATCCAGGACTTGACGATCATGCGCTTTTCCGCCTTTTGCAATTGGGTCCAGAAA---GTAGCTCGTCGCAACCGTCAACG
i caeSp111.Scaffold548  C 0 I 24
s caePb3.Scfld02_62      509787 253 -   783054 --------tttgtagaTCGCCAATCCAAACAACAGAATCACCATtcaagaaatgatgaaacatACTTTCTTCGAAGGAGTTGACTGGAAGAACATAGCTTCGGCCACTCCTCCAGTACTTCATGCTTACATTCCAGCTACTTTTGGAGAGCCAGAATACTATTCGAACATTGCACCTGAAGACGTCGAGCCAGGACTCGATGAGAATGCCATGTTGCGTTTGATGAATATGG---CTGACT---TGATTTCTTCTCAGCCGTCGACG
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127009 255 -   140921 ---CTTTTTATTCAGGTTTCGGAACCAAGCAAACGTATCAAAACGGAACAATTAATGACGCATCCGTTTTTCGAGAATGTAGACTGGGAAAATATTGCAAATCTTACACCGCCAGTTCTCCACGCATACATTCCTGCTACTTTTGGTGAACAGGAATATTACTCGAACAT------TGACGTGGTAGAACCTGGCCTGGACGATCGTGCAATGCTAAGATTGTTGAATATAGGACAAGGGA---CAAGCGGATCTCAACCATCCACG
i caeJap4.Scaffold17966 C 0 C 0

a score=981.000000
s ce10.chrX             1325666 10 + 17718866 TGAGTTTGAA
s cb4.chrX               110809  9 + 21540570 TTAGTTCCa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  380522 10 +  1162296 TGAGTCTAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      510040 10 -   783054 taagtttgag
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127264 10 -   140921 TAATTTTTGC
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold548    13313 24 +    67506 I

a score=-4714.000000
s ce10.chrX             1325676 27 + 17718866 -GCATTTTT---TTCTTGCATT----AAAAGTTTT
s cb4.chrX               110818 23 + 21540570 --cattctt---tttcagaa------aaaaattt-
i cb4.chrX              C 0 I 31
s caePb3.Scfld02_62      510050  8 -   783054 ----ttttt---att--------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127274 35 -   140921 GGGATTCTTTAATGTTTACATTCTCAAACAGTTTC
i caeJap4.Scaffold17966 C 0 C 0
e caeSp111.Scaffold548    13313 24 +    67506 I
e caeRem4.Crem_Contig24  380532  0 +  1162296 C

a score=-1220.000000
s ce10.chrX             1325703 36 + 17718866 ACCTTGCACTGACCAAAATTTATTGAAACTATTAAT
s caePb3.Scfld02_62      510058 16 -   783054 --------cAGATGCAAAT------------TCAAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127309 27 -   140921 ---------AGACCAATACTACCAGATGTTTTTAAC
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX               110841 31 + 21540570 I
e caeSp111.Scaffold548    13313 24 +    67506 I
e caeRem4.Crem_Contig24  380532  0 +  1162296 C

a score=-3860.000000
s ce10.chrX             1325739 290 + 17718866 TATTTGATTCTGATTAACAATGACCAAAAGATTTGAACTGACAAAGTGCAAATTTGCACCGACCAAAAAACAGTTTGCACTGACCACCTCTTCATTTGCACTGACCACCTCTTCATTTGCACTGACCAACTTTTCATTTGCACTGACCATCTCTTCATTTGCACTGACCAACTTTTCATTTGCAATTCTGGCAATGATTCTTTTGCATCTA--CTGATCAAAAATTGATTCAAATCAATTAATTTTCTTTGACAGTACTATGCCTTATTCAAGGAGATGCTGATCTGAAAAT
s caePb3.Scfld02_62      510074 120 -   783054 TATTCGATT-------------------------------------TACAGACCTTCAACATCTGACCACCAAGGTGAAC------------CATTTGCGGCGACCGC----------------------------------------------------------------------TTTGCAGT-------ATG-----TTCACAACTAGGTTGTTcttgaattga------------gattttttttcagaa--------------------------gaactg---at
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  127336   0 -   140921 C
e cb4.chrX               110841  31 + 21540570 I
e caeSp111.Scaffold548    13313  24 +    67506 I
e caeRem4.Crem_Contig24  380532   0 +  1162296 C

a score=-2404.000000
s ce10.chrX             1326029 35 + 17718866 TCTCAATAGTTGATA--AAAATTACTAACCCCTTAG--A
s caeRem4.Crem_Contig24  380532 30 +  1162296 TCCCTGTAGTAATTA--AAA------TAACCGATATTA-
i caeRem4.Crem_Contig24 C 0 I 31
s caePb3.Scfld02_62      510194 30 -   783054 gctcaaaaggaaaaagcaaa------aatccGTGAG---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  127336  0 -   140921 C
e cb4.chrX               110841 31 + 21540570 I
e caeSp111.Scaffold548    13313 24 +    67506 I

a score=0.000000
s ce10.chrX             1326064 34 + 17718866 AAGTTTCAGACCGTCTAACGTGGAACATCGCGGA
e caePb3.Scfld02_62      510224  0 -   783054 C
e caeJap4.Scaffold17966  127336  0 -   140921 C
e cb4.chrX               110841 31 + 21540570 I
e caeSp111.Scaffold548    13313 24 +    67506 I
e caeRem4.Crem_Contig24  380562 31 +  1162296 I

a score=4137.000000
s ce10.chrX             1326098 23 + 17718866 GACCCATTTGTTTCGGAAATTGC
s cb4.chrX               110872 23 + 21540570 AATCCATTAGTCCCAGAAACATC
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig24  380593 22 +  1162296 GATCCCTTCGCTCCGTAAGTTT-
i caeRem4.Crem_Contig24 I 31 C 0
s caeSp111.Scaffold548    13337 23 +    67506 GACCCATTTGCCGCAGTTGTTGC
i caeSp111.Scaffold548  I 24 C 0
s caePb3.Scfld02_62      510224 10 -   783054 -------------CAGAAATTGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127336 23 -   140921 GAGCCATTTACGGTGGAAATTAC
i caeJap4.Scaffold17966 C 0 C 0

a score=-8825.000000
s ce10.chrX             1326121 106 + 17718866 ACCGTGAG---------TGATTTGCACCTAATTGGTTATTTTT-AATAATCATTA------AATTAT-------AGACGCGCCAATTCGGAAGCCGAAAAGAA----CCGCGCCGCACGTGCGCAGAAGCTCG
s cb4.chrX               110895  86 + 21540570 tgggtgaa---------aaatttt------tttcacaactttt-atcaatcagtt------tctttt------cagaaaacagaatTTGAAAGCCGA-----------CGCACGAGCCGAA--------TTAG
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig24  380615  92 +  1162296 -----------------AACTTTG------ATTCAGTTCTTTTCATTATTCAACTgtgttatatttt------cagacgtGCCGATTCGTCTGCTGAAAAGGC----TCGCGCCGCCCGCG--------CTAG
i caeRem4.Crem_Contig24 C 0 I 8
s caeSp111.Scaffold548    13360 104 +    67506 TTCGTGAG---------TGGTTAG------TTCTCTaattatt-atcaattttca------ttttttcaggcaCAGACGTGCGGATGTTCAAGCAGAAAGAGCAAAGGCGCGTGAAATAAG-------ATTAG
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17966  127359 104 -   140921 ACCGTAAGGATTGATTAAAATTGA------ATATATCGCTTAA-ATGAA------------TATTTT------CAGACGTACTAACTCTCAAACTGATCGACT----CCGTGCCGCTCGGGaaaaaaaGCTGG
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      510234   0 -   783054 C

a score=150360.000000
s ce10.chrX             1326227 248 + 17718866 AAGAGCAACGTGTCAAAAACCCATTCCACATCTTCACCAACAACTCGCTCATTTTGAAACAAGGATATTTGGAAAAGAAGCGAGGATTGTTTGCCAGACGCCGAATGTTCCTGTTGACCG------------------------------------------------AAGGACCGCATCTCTTGTACATTGAT----GTGCCGAATCTTGTGCTCAAAGGAGAGGTACCATGGACGCCGTGCATGCAGGTGGAGCTAAAAAACTCGGGAACTTTCTTTATACATACGGTAGG-------------TCAGAAT
s cb4.chrX               110990 242 + 21540570 GGAAGCTTCATAATGAAAACGAGTGGCGTGTTTACACTCCTCAGaatctgattttgaaatacGGATATTTGAACAAAAAGCGTGGATTATTCGCTAGGCGACGCATGTTTCTACTGACTG------------------------------------------------AAGGACCTCATCTTCTCTACATTGATGAGGGAATCAAAACTATT----AAAGGAGAAATCCCATGGACACCATGCATGCAGGTCGAGTACAAGAACCCGggaacttttttcattcatacggta-------------ttc------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig24  380715 247 +  1162296 AGGAGCAACGCGTCAACAACCCATTCCACATATTCACTGGAAATATGCTTATCCTGAAACAAGGATACCTTGAGAAGAAGCGAGGATTATTCGCAAGACGGCGCATGTTTCTGCTCACCG------------------------------------------------AAGGACCACATCTCTTGTACATTGAC----GTCCCAAATCTGGTGTTAAAGGGAGAAATCCCATGGACACCGTGTATGCAAGTCGAGTTTAAGAATTCtggaacttttttcattcatacgGTAAG--------AACTAT------
i caeRem4.Crem_Contig24 I 8 C 0
s caeSp111.Scaffold548    13464 249 +    67506 AGGAGCAACGGAAAGAAAACCCTTTTCACATCTTCACTAATAatttgctcattttgaagcaagGATATTTagataaaaaa-gaggattCTTTGCCCGCCGCCGCTTGTTCTTGCTCACCG------------------------------------------------AGGGACCACATCTTCTTTACATAGAT----GTCCCGAATCTCGTTCTCAAAGGCGAAATTCCATGGTCTCCATGTATGCAAATTGAGTTGAAGAATGCTGGAACCTTTTTCATCCATACTGTGAG-----------CTCAAGAGG
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      510234 261 -   783054 AAGAGCAACGACTCAATAATCCGTTCCATATCTTCACCAACAACttgctcattttgaaacaaggatATCTTGAAAAGAAACGTGGACTGTTCGCCCGTCGTCGTTTGTTCCTTCTGACAG------------------------------------------------AGGGACCACATCTTCTATACATTGAC----GTCCCAAACAAGGTTCTAAAAGGAGAAATTCCATGGACGCCGTGTATGCAGATTGAAGTCAAAAATCCTGGAACATTCTTCATTCACACTGTaagtttttcatatatttcagaac
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  127463 296 -   140921 ATGAGCAACAAATGAACAATAATTTTCATTTGTTCACTAATAATATGCTAATATTAAAGCAGGGCTATTTGGAAAAGAAACGCGGGTTTTTCGCGCGTCGAAGAATGTTTCTTCTCACTGAGGTAAActattttttaatggttttctGGAGACGCCAAGGTTACTTTCAGGGACCTCATCTTCTCTATATTGAC----GTATCAAACATGGTGTTGAAAGGGGAAATTCCGTGGACTCCGTGCATGCAAGTCGAGCTTAAAAACTCGGGAACTTTTTTCATTCACACGGTATG-----------TTTGGAT--
i caeJap4.Scaffold17966 C 0 I 411

a score=263.000000
s ce10.chrX             1326475 4 + 17718866 AATC
s caeSp111.Scaffold548    13713 4 +    67506 AAAC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      510495 4 -   783054 attc
i caePb3.Scfld02_62     C 0 I 118
e caeJap4.Scaffold17966  127759 411 -   140921 I
e cb4.chrX               111232 0 + 21540570 C
e caeRem4.Crem_Contig24  380962 0 +  1162296 C

a score=273.000000
s ce10.chrX             1326479 1 + 17718866 A
s cb4.chrX               111232 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  380962 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      510499 118 -   783054 I
e caeJap4.Scaffold17966  127759 411 -   140921 I
e caeSp111.Scaffold548    13717 0 +    67506 C

a score=-7596.000000
s ce10.chrX             1326480 32 + 17718866 ------TAGCTGTCTATCTCATTATAGTA--CTCAATGAA
s cb4.chrX               111233 17 + 21540570 ------cagattt---tc-------ag-------aaggca
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24  380963 20 +  1162296 ------TAAATGTTGatc-------gg-------aaaaaa
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold548    13717 21 +    67506 ---------ATTTCTATC-------AGT---TTCATAGAA
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17966  128170 33 -   140921 TAACTGtgcttttttatt-------attgttttcaaaaat
i caeJap4.Scaffold17966 I 411 C 0
e caePb3.Scfld02_62      510499 118 -   783054 I

a score=114436.000000
s ce10.chrX             1326512 193 + 17718866 TCTG--------------------------------------------AAAATTTCAA--ATTTT---CAGCCCAACCGCGTCTACTACTTGTTTGATCTCGAAAAGAAAGCAGATGAGTGGTGTAAGGCTATCAATGATGTTCGCAAGCGGTACTCGGTGACTATCGAAAAGACTTTTAACTCTGCGATGCGTGACGGAACATTTGGCAGCATTTATGGAAAGAAAAAGTCCAGAAAGGTA
s cb4.chrX               111254 190 + 21540570 atca--------------------------------------------aacat--------ttttttacagCCGAATCGCGTCTATTACTTGTTTGACCCAGAGAAAACTGCGGCCGAATGGTGCAAGGCAATTGAAGCTGTTCGTAAGCAGTATGCCACAGTCATTGAAGATATTTTCACTGTAGCCATGCGAGACGGAACTTTTGGTGACATCTACGGAAAGAAGAAAACTAGAAAGGTT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24  380989 187 +  1162296 gttg--------------------------------------------aaaat--------tttc---cagccTAACCGTGTTTACTACTTGTTCGATCTTGAAAAGAAGGCCGAGGAATGGTGCAAGGCTATCGAGGATGTCCGCAAGCGATATGCCAAGACCATCGAGTCGACTTTCAACGATGCTATGCGTGACGGCACGTTCGGAAGCATTTATGGAAAGAAGAAGTCAAGAAAAGTT
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold548    13738 182 +    67506 ACTA---------------------------------------------------------ATTT---CAGCCTAACCGTGTCTATTATCTTTTTGACCtggagaaaaaagcagaTGAGTGGTGCAAGGCCATTGAGGACGTTCGAAAACGATACTCCAAAGTTATCGAGCAGACATATGAACTTGCCATTCGTGACGGAACGTATGGAAGCATctatggaaagaaaaaatccagaaagGTT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      510617 205 -   783054 ACTGTTTCTTTACGAATTCATG--------------------------ATGAT--------ATTT---CAGCCAAACCGGGTCTACTACCTATTCGATGGTGAGAAAAAAGCCGATGAATGGCGTCAGGCGATTGAAGAAGTGCGTAAACGTTATGCTAAAGTCATCGAGCAAACTTTCGATGTGGCAACACGCGACGGAACTTTCGGAAGCATatacggaaaaaagaaatccagaAAGGTA
i caePb3.Scfld02_62     I 118 I 33
s caeJap4.Scaffold17966  128203 235 -   140921 ----tactcCTAGAAATGCTCGATTCCCCCGAGTTTAATTATATGTCTAAAATATGAATTAATTT---CAGCCAAATCGTGTTTACTATTTATTCGATCTCGAGAGAAAAGCTGACGAATGGTGTAAAGCTATAGATAATGTTCGCAAGCGGTATGCAAAGCAAATTGAGCAAACATTTAATACAGCAATGCAAGATGGTACCTTTGGAAGTATTTACGGAAAGAAAAAGTCtagaaaagtg
i caeJap4.Scaffold17966 C 0 C 0

a score=-369.000000
s ce10.chrX             1326705 2 + 17718866 TG
s cb4.chrX               111444 2 + 21540570 TG
i cb4.chrX              C 0 I 1526
s caeRem4.Crem_Contig24  381176 2 +  1162296 GC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    13920 2 +    67506 TG
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17966  128438 2 -   140921 ag
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      510822 33 -   783054 I

a score=363.000000
s ce10.chrX             1326707 2 + 17718866 AA
s caeRem4.Crem_Contig24  381178 2 +  1162296 AA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    13922 1 +    67506 -G
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17966  128440 2 -   140921 aa
i caeJap4.Scaffold17966 C 0 I 29
e caePb3.Scfld02_62      510822 33 -   783054 I
e cb4.chrX               111446 1526 + 21540570 I

a score=-314.000000
s ce10.chrX             1326709 2 + 17718866 TT-
s caeRem4.Crem_Contig24  381180 2 +  1162296 TT-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    13923 3 +    67506 TTT
i caeSp111.Scaffold548  C 0 I 29
e caePb3.Scfld02_62      510822 33 -   783054 I
e caeJap4.Scaffold17966  128442 29 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I

a score=91.000000
s ce10.chrX             1326711 1 + 17718866 A
s caeRem4.Crem_Contig24  381182 1 +  1162296 A
i caeRem4.Crem_Contig24 C 0 I 27
e caePb3.Scfld02_62      510822 33 -   783054 I
e caeJap4.Scaffold17966  128442 29 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I
e caeSp111.Scaffold548    13926 29 +    67506 I

a score=0.000000
s ce10.chrX             1326712 645 + 17718866  
e caePb3.Scfld02_62      510822  33 -   783054 I
e caeJap4.Scaffold17966  128442  29 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I
e caeSp111.Scaffold548    13926  29 +    67506 I
e caeRem4.Crem_Contig24  381183  27 +  1162296 I

a score=182.000000
s ce10.chrX             1327357 2 + 17718866 AT
s caePb3.Scfld02_62      510855 2 -   783054 at
i caePb3.Scfld02_62     I 33 C 0
e caeJap4.Scaffold17966  128442 29 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I
e caeSp111.Scaffold548    13926 29 +    67506 I
e caeRem4.Crem_Contig24  381183 27 +  1162296 I

a score=273.000000
s ce10.chrX             1327359 1 + 17718866 T
s caePb3.Scfld02_62      510857 1 -   783054 t
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  128471 1 -   140921 T
i caeJap4.Scaffold17966 I 29 C 0
e cb4.chrX               111446 1526 + 21540570 I
e caeSp111.Scaffold548    13926 29 +    67506 I
e caeRem4.Crem_Contig24  381183 27 +  1162296 I

a score=61549.000000
s ce10.chrX             1327360 128 + 17718866 TTTTGTAGGAAATGATGCGTGAACAGAAGGCGCTGCGCCGCAAACAAGAAAAGGAGGAGAAAAAGGCGCTAAAAGCCGAG---CAAGTGAGCAAGAAGCTTTCAATGCAAATG---GACAAGAAGTCGCCTTGA
s caeRem4.Crem_Contig24  381210 134 +  1162296 tttttcaggaGATGCTCCGTGAACAGAAGGCTCTTCgtcgaaaacaagaaaaggaagagaagaaggcgCTGAAGGCCGAACAACAAGTCAGCAAGAAGCTCTCCATGCAAATGCAAGAGAAAAAGTCTCCGTAA
i caeRem4.Crem_Contig24 I 27 C 0
s caeSp111.Scaffold548    13955 131 +    67506 ttttccaggAAATGATACGAGAGCAAAAAGCGCTTCGTCGCAAACAGGAAAAAGCAGAGAAGAAAGCTTTGAAAGCCGAACAACAAGTTAACAAAAAGCTATCAATgcaaatg---gagaaaaaatccCCATAA
i caeSp111.Scaffold548  I 29 C 0
s caePb3.Scfld02_62      510858 131 -   783054 tttctcaggaaATGATCCGTGAACAAAAAGCACTCCGTCggaaacaagagaaagaagagaaaagggagCTAAAAGCGGAGCAACAAGTAAACAAGAAGCTGTCTATGCAGATG---GACAAAAAATCCCCATAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  128472 125 -   140921 TATTTCAGGAAATTATGAGAGAGCAAAAAGCGTTGCGCCGAAAACAAGTAAAGGACGAAAGAAAAGCTATGAAAGCTGAACAA-----AATCAAAAGACTGTGGGT-CAAGTT---GATCAAAAATTATCCTGA
i caeJap4.Scaffold17966 C 0 I 1616
e cb4.chrX               111446 1526 + 21540570 I

a score=-4442.000000
s ce10.chrX             1327488 10 + 17718866 AGG-CTCA---CCT
s caeRem4.Crem_Contig24  381344  8 +  1162296 ACTCACCG------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    14086  7 +    67506 AAT-GTca------
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      510989 10 -   783054 ACG-TCTATTT---
i caePb3.Scfld02_62     C 0 I 891
e caeJap4.Scaffold17966  128597 1616 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I

a score=-19412.000000
s ce10.chrX             1327498 534 + 17718866  
s caeRem4.Crem_Contig24  381352 504 +  1162296  
i caeRem4.Crem_Contig24 C 0 I 19
s caeSp111.Scaffold548    14093 495 +    67506  
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      510999 891 -   783054 I
e caeJap4.Scaffold17966  128597 1616 -   140921 I
e cb4.chrX               111446 1526 + 21540570 I

a score=3601.000000
s ce10.chrX             1328032 53 + 17718866 AATCGAGAGTGGCAAGAGACTCAAACTCTTGGGC-------------------TGTGGATAATCTGGAGGAT
s cb4.chrX               112972 47 + 21540570 aATAAAGGGTGGCAAGAGA--CAAACTCATGAAA-------------------CGAAAACTCTTTTGA----
i cb4.chrX              I 1526 C 0
s caeRem4.Crem_Contig24  381875 47 +  1162296 AGTTGAGAGTGGCAAGATA--TACACTCTTGAAA-------------------CGGGATAACACTTGA----
i caeRem4.Crem_Contig24 I 19 C 0
s caeSp111.Scaffold548    14588 66 +    67506 AATCCAAAACGGCAAGATC--TACACTCACAAAAAACGTTATTCAAAATGTGGTGGAAAGATTTCTGA----
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      510999 891 -   783054 I
e caeJap4.Scaffold17966  128597 1616 -   140921 I

a score=-19256.000000
s ce10.chrX             1328085 66 + 17718866 TCGAATGATTAGCGATAAAAA---------------AAAGAAAATTAAT--TATCTTGTCCCAAAAGTTG------ATTATTCAAC----------AAA----
s cb4.chrX               113019 49 + 21540570 ----------------AGGAG-----------------TGGTACAGGAT---------TCTCAAAAGTAG--------TCGTTAAATTAGCAATATAAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  381922 57 +  1162296 ----------------AAAAGATTA--------CACAATGACACAGAATAGTCGCCCGTTTCAAGAGTAG--------tatttgaa----------ata----
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    14654 76 +    67506 ----ATGTATTATAGTAAAAACTCAAACCAATTCTCaatgaaacgtttt-tttgcCAACATGAAAGgtga--------ttttggaa----------aaa----
i caeSp111.Scaffold548  C 0 I 2
s caeJap4.Scaffold17966  130213 78 -   140921 --------------tcgAAAAATGAGTGAAAGTTAAACAGAAGTAAACT-TTTAGTTACATTAGAATTACaaataaattaattgta----------aGGCAAG
i caeJap4.Scaffold17966 I 1616 C 0
e caePb3.Scfld02_62      510999 891 -   783054 I

a score=50827.000000
s ce10.chrX             1328151  84 + 17718866 AAATTGCTG-----------------------------------------------------------------TTAATATGACTTGAAACCACTG------AGATGGTTGAATTGCACATCGGGGTAGAAGGACGTTGGGCCACTTATCTGGAA
s cb4.chrX               113068  76 + 21540570 --------A-----------------------------------------------------------------TTAGTATGACTTGAAGCCACTT------AAATGATTGAATTGAACATCCGGATAGAATGAGGTTGGTCCgcttatctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  381979  76 +  1162296 --------a-----------------------------------------------------------------ttaataTGACTTAAAACCACTG------AGGTGATTGAATTGGACGTCTGGATAAAAGGACGTTGGACcacttatctgaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    14732 149 +    67506 gaatgaatacGGTAGAATTGTTGAATTATGAATCgcaaattcttttttccattcactttgcttcaaaaatgaattcaatatGATTTGAAACCATTA------AGTTGATTGAATTGAACATCGGGATAAAATGATGTTGGACCACTTATCTGTAA
i caeSp111.Scaffold548  I 2 C 0
s caePb3.Scfld02_62      511890  84 -   783054 AAATATATA-----------------------------------------------------------------TCAATAAGATTTAAAACCACTG------AGGTGGTTGAATTGGACGTCCGGATAAAAAGATGTAGGTCCGcttatctgaaa
i caePb3.Scfld02_62     I 891 I 41
s caeJap4.Scaffold17966  130291  90 -   140921 --------------------------------------ATGGttttt---------------------------ttAGTATGACTTGTATTCATTGTGCAAATGATGATTCATTTGAACATCCGGGTAGAACGATGTTGGACCACTTATCTGTTA
i caeJap4.Scaffold17966 C 0 C 0

a score=273.000000
s ce10.chrX             1328235 3 + 17718866 TTT
s caeJap4.Scaffold17966  130381 3 -   140921 TTT
i caeJap4.Scaffold17966 C 0 I 1
e caePb3.Scfld02_62      511974 41 -   783054 I
e cb4.chrX               113144 0 + 21540570 C
e caeSp111.Scaffold548    14881 0 +    67506 C
e caeRem4.Crem_Contig24  382055 0 +  1162296 C

a score=-3307.000000
s ce10.chrX             1328238 3 + 17718866 GAA----
s cb4.chrX               113144 2 + 21540570 --tt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  382055 2 +  1162296 --at---
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    14881 6 +    67506 -catgaa
i caeSp111.Scaffold548  C 0 I 6
e caePb3.Scfld02_62      511974 41 -   783054 I
e caeJap4.Scaffold17966  130384 1 -   140921 I

a score=-130.000000
s ce10.chrX             1328241 34 + 17718866 TAGTGTTAATA--TCGGTTTTTTATGAGATTTTTTT
s cb4.chrX               113146 36 + 21540570 ctgtgatataaactttgaaattcacgAAATTTGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  382057 26 +  1162296 tcgtgataaaa-----gtaattttttagatt-----
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      511974 41 -   783054 I
e caeJap4.Scaffold17966  130384  1 -   140921 I
e caeSp111.Scaffold548    14887  6 +    67506 I

a score=-1080.000000
s ce10.chrX             1328275 97 + 17718866 AATGAGACAGTTTGTAACTTGATACAGGTACGTTGACAATAAAATGTTTCCAAAATTTGTTTGACCAAACTTTTCGCTCACTTTTTTTTCCTGACTG
s caeRem4.Crem_Contig24  382083 27 +  1162296 ----------------------------------------------------aattttttttgg------------------ttctataCCTGACTG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      511974 41 -   783054 I
e caeJap4.Scaffold17966  130384  1 -   140921 I
e cb4.chrX               113182  0 + 21540570 C
e caeSp111.Scaffold548    14887  6 +    67506 I

a score=0.000000
s ce10.chrX             1328372 494 + 17718866 TTTGATTGCATTTAAGACGCAATACGAAAAAATCAAGTTTTTCAGCTTAAGGATATTGGCTTTTGGATTTTAATTTATGAAATACAACATGTTGATCGAGCTTTTGAATCAATTCCTAATGATCTACGGGGGTAGGCAAGAATTTTCAGATTTTTTGCCATatttttgaccatcggtattttcgacaatttccgaattttaagaagtggcagcaattcaaaaattctagaaattctgagtttaaaaatttccggcaattcggccaaatttttgaaaaGAGTTGAAAACATTTTAAAAACTTTTATATGTTCGGTAATTGCCAATTTGTCAAATTACCAAACTACTTATATTTATAGGGTTCAATAAAAAACGAGAGATGAGAAATATACAACTTTCAATTTTTTTACAATTTAAAATATTAAGAATTTGTGATCCATTTTAGCCTTCccccctccccctccccctccTTTGAATTTATTTTTTCAGTATCACTA
e caePb3.Scfld02_62      511974  41 -   783054 I
e caeJap4.Scaffold17966  130384   1 -   140921 I
e cb4.chrX               113182   0 + 21540570 C
e caeSp111.Scaffold548    14887   6 +    67506 I
e caeRem4.Crem_Contig24  382110   0 +  1162296 C

a score=91.000000
s ce10.chrX             1328866 1 + 17718866 A
s caeJap4.Scaffold17966  130385 1 -   140921 A
i caeJap4.Scaffold17966 I 1 C 0
e caePb3.Scfld02_62      511974 41 -   783054 I
e cb4.chrX               113182 0 + 21540570 C
e caeSp111.Scaffold548    14887 6 +    67506 I
e caeRem4.Crem_Contig24  382110 0 +  1162296 C

a score=-622.000000
s ce10.chrX             1328867 25 + 17718866 TTCAGAAGCTT--ACAACGCTTATCA--------C
s caeSp111.Scaffold548    14893 29 +    67506 tttagGAGAGA--AGAACATTCATCAA----TTGC
i caeSp111.Scaffold548  I 6 C 0
s caeJap4.Scaffold17966  130386 35 -   140921 TtcaacagttttcaaaatacATATCGACATTTGAC
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      511974 41 -   783054 I
e cb4.chrX               113182  0 + 21540570 C
e caeRem4.Crem_Contig24  382110  0 +  1162296 C

a score=-1162.000000
s ce10.chrX             1328892 2 + 17718866 -TC
s caeSp111.Scaffold548    14922 2 +    67506 -CC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512015 2 -   783054 -TT
i caePb3.Scfld02_62     I 41 C 0
s caeJap4.Scaffold17966  130421 2 -   140921 AT-
i caeJap4.Scaffold17966 C 0 C 0
e cb4.chrX               113182 0 + 21540570 C
e caeRem4.Crem_Contig24  382110 0 +  1162296 C

a score=6815.000000
s ce10.chrX             1328894 9 + 17718866 ACTTGACTA
s cb4.chrX               113182 9 + 21540570 ACCTGACTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    14924 9 +    67506 ACCTGGCTA
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512017 9 -   783054 ACCTGGCTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  130423 9 -   140921 ACCTGACTA
i caeJap4.Scaffold17966 C 0 C 0
e caeRem4.Crem_Contig24  382110 0 +  1162296 C

a score=146963.000000
s ce10.chrX             1328903 166 + 17718866 ACTGACGGGCTCTCAATAACACTCTCTGCTAAGTGCTGCTTGTGAATTCGATCCTTATGCCGGTTCATGAGCCAAACGGTGAGCAGAGCAAGGACAGCAAACACGATGGTTATGAGCACCATAACCAGAAGAGCTATCGCCCAGCCAAACGATGTACTGCGTCTAA
s cb4.chrX               113191 166 + 21540570 ACTGATGGGCTTTCGATGGTGCTCTCTGCGAGATGCTGCTTATGAATCTTGTCTTTGTGCCTGTTCATAAGCCAGACGGTTACCAATGCTAAAACGGCAAATACAATTGTTATGAGAACCATAACCAGAAGTGCTATCGCCCAGCCAAACGAAGTGCtccgtctga
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24  382110 166 +  1162296 ACTGATGGGCTCTCGATAGTGCTCTCTGCCAAATGTTGCTTGTGAATCTTGTCTTTATGTCGATTCATGAGCCAAACAGTTATCAGTGCTAAAACTGCAAACACAATGGTTATGAGAACCATAACCAGTAGTGCTATCGCCCATCCAAATGATGTGCTTCTtctga
i caeRem4.Crem_Contig24 C 0 I 333
s caeSp111.Scaffold548    14933 166 +    67506 ACTGATGGACTCTCAATAGTACTTTCAGCTAAATGCTGCTTGTGAATTCTGTCTTTATGTCGATTCATGAGCCAAACTGCAAGCAGTGCAAGAACGGCAAACACAATAGTGATAAGAACCATAACTAAAAGAGCTATCGCCCATCCGAAAGATGTGCTTTGCctaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512026 166 -   783054 ACAGATGGACTCTCAATTGTACTCTCAGCCAAATGTTGTTTGTGAATTTTATCCTTATGTCTGTTCATAAGCCAAACGGTGAGCAGGGCCAAAACGGCAAAAACAATGGTTATGAGCACCATAACTAGTAATGCTATTGCCCAGCCAAACGATGTACTCCGTCTGA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  130432 166 -   140921 ACTGAGGAGCTTGCAATAATGCTCTCTGCAACTTGTTGTCTGTGCATTTTATCTTTGTAACGGTTCATCAGCCATACGGTTAGCAAAGATGCAACTGCGAACACCATAGAAATGAGCACCATAATTAGTAAAGCAATTGCCCATCCAAAAGAAGTGCTTCGTCTAA
i caeJap4.Scaffold17966 C 0 C 0

a score=-34393.000000
s ce10.chrX             1329069 43 + 17718866 ACATATAAGAAAATGGCTTACaa-aattaaa-----aata-----------------------------------------------------------aaaataaaa
s cb4.chrX               113360 91 + 21540570 -ttttttgaggaat------cag-ttttaaa-----aattttttgtgctGTTGAAGTGAGTATATTGTAGAAAATG--ttaatttagt-ttttttttcaaaataaga-
i cb4.chrX              I 3 I 129
s caeRem4.Crem_Contig24  382609 26 +  1162296 ----------ACac------gaa-ttccaaa-----aaac-----------------------------------------------------------aaaaaaga-
i caeRem4.Crem_Contig24 I 333 C 0
s caeSp111.Scaffold548    15099 30 +    67506 ---------------------aagaatcaaa-----aagt-------------------------------------------------tttgcgTT--ATCGTAAG-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512192 36 -   783054 ---------------------AA-AGTCatgtgttcaatt-------------------------------------------------ttttcatttgaagaaaga-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  130598 38 -   140921 ----------------------A-AACCAAG-----TAGA-------------------------------ATACGATTTACTTAAGTGTCTATATT-----------
i caeJap4.Scaffold17966 C 0 C 0

a score=170458.000000
s ce10.chrX             1329112 204 + 17718866 aaCACTAACGCAGCAAGATCCGAAATAGTACAACATCCATGGCTGCAACATCCAAGTTCGCAAAGGTATGGGATTGCTGTGTCGGCTGTGTTATAGCGGTAGAAGCAGATAGTCTGACCGGTTTCGGACACTTCTTGACGGATGAAACCACCTAGGCTGTGGCGGACAAGGTTTTGAGCAGCAGTTGCCACGTTTGTTCTGAAA
s cb4.chrX               113580 204 + 21540570 AAAACTTACGCAGCTAAATCGGAAATAGTGCAACAACCATGCCCGCAACACCCGAGCTCGCAAAGGTATGGAATAGCTGTGTCGACGCTGTTATATCGGTAGAAGCAAATTGTTTGACCTGTTTCGGAAACTTCTTGACGAATAAATCCTCCTAGACTGTGTCggatcaaattttgagcagCTGAGGCAACATTAACGCTGAGA
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig24  382635 204 +  1162296 caatCTTACGCGGCTAGATCCGAAATAGTACAACATCCATGACTACAACACCCAAGTTCACATAAATATGGAATCGCAGTGTCGGCGGTGTTGTAACGGTAGAAGCAAATGGTTTGTCCGGTTTCCGACACCTCTTGACGGATAAACCCGCCTAAACTGTGTCGGACTAAGTTCTGGGCAGCAGTTGCAACATTGACACTGAAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    15129 204 +    67506 TAAACTCACGCTGCAAGGTCAGAAATAGTGCAACATCCATGATTACAACATCCAAGTTCGCAAAGATATGGAATGGCGGTATCCACGGTATTATAACGATAGAAGCAAATAGTTTGGCCGGTTTCAGACACTTCTTGACGGATAAAGCCTCCTAGACTGTGGCGGACTAAATTTTGCGCTGCAGTTGCCACGTTAAcgctgaaa
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512228 204 -   783054 aaaacatacgCAGCAAGATCCGAAATCGTACAGCATCCATGGCTGCAACATCCGAGTTCGCAAAGATATGGGATTGCCGTGTCGCCAACAGTGTAGCGGTAGAAGCAAATGGTCTGaccagtttcagaaacttcttgTCGTATGAATCCTCCAAGGCTATGACGGACCAGATTTTGAGCAACAGTTGCAAGATTGACGCTgcaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  130636 200 -   140921 ----CTTACGCTGCAATATCGGAAACAGTACAACACCCATGGTTACAGCAGCCAAGTTCGCACATGTATGGTATTGCGGTGTCCACAGAGTTGTAACGATAAAAGCAGATTGTCTGTCCCGTTTCCGACACTTCTTGACGTATGAACCCACCGAGGCGGTGACGGATATAATTTTTAATGTGTGCTGCTGTactttctctgaaa
i caeJap4.Scaffold17966 C 0 I 1

a score=235.000000
s ce10.chrX             1329316 3 + 17718866 TAA
s cb4.chrX               113784 3 + 21540570 AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  382839 3 +  1162296 AGG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    15333 3 +    67506 taa
i caeSp111.Scaffold548  C 0 I 9
s caePb3.Scfld02_62      512432 3 -   783054 aaa
i caePb3.Scfld02_62     C 0 I 59
e caeJap4.Scaffold17966  130836 1 -   140921 I

a score=906.000000
s ce10.chrX             1329319 3 + 17718866 TAA
s cb4.chrX               113787 3 + 21540570 TAA
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig24  382842 3 +  1162296 TAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    15345 3 +    67506 tga
i caeSp111.Scaffold548  I 9 C 0
e caePb3.Scfld02_62      512435 59 -   783054 I
e caeJap4.Scaffold17966  130836 1 -   140921 I

a score=546.000000
s ce10.chrX             1329322 2 + 17718866 AA
s caeRem4.Crem_Contig24  382845 2 +  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 20
s caeSp111.Scaffold548    15348 2 +    67506 aa
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      512435 59 -   783054 I
e caeJap4.Scaffold17966  130836 1 -   140921 I
e cb4.chrX               113790 49 + 21540570 I

a score=651.000000
s ce10.chrX             1329324 42 + 17718866 CATTGAAATTAAGAATACGTGTTTGAAAAAAAATTGAAAATT
s caeSp111.Scaffold548    15350 36 +    67506 aatggaagttaaaactctatttt------attgttgaaaatt
i caeSp111.Scaffold548  C 0 I 124
e caePb3.Scfld02_62      512435 59 -   783054 I
e caeJap4.Scaffold17966  130836  1 -   140921 I
e cb4.chrX               113790 49 + 21540570 I
e caeRem4.Crem_Contig24  382847 20 +  1162296 I

a score=0.000000
s ce10.chrX             1329366 451 + 17718866 TCAAGCTGGAGATATGTTATTTCTGTACATAGTCTGTAGTAAGTATGGAGCACCGTTTTTTTTTTGAAAGCATCACATGTAGTGCACAACGTCAACTGTATGGCGTTTGAGCATTGAAGTAAGGAAAACCGAGTAGGCATACGGTAGGGGTATTGTAAATGAGCCTCGCAACCATCTGGCAAAAAAGCTCACTCAGAGCAATTAACTAAATTTTCCTAATTTTACAAAAATGTTAACTGGATTACTGTCGCTATTATTTTTTAACAACCAGGTTGCAGAATTATAGTTTTTAAATTTTCAAGCGTGTTCAAAAATTGACCTGCTCGAGAATGCGTAAAGTCTTATTAATTTTCCAAATGAGCAAGCTTGCATGTATATTTTTAGCAAACGTCAAATTGTGCTGCATGGGTGGAACAGGTAATCAGAATTCACAATTAGGGACTGTGTACAC
e caePb3.Scfld02_62      512435  59 -   783054 I
e caeJap4.Scaffold17966  130836   1 -   140921 I
e cb4.chrX               113790  49 + 21540570 I
e caeSp111.Scaffold548    15386 124 +    67506 I
e caeRem4.Crem_Contig24  382847  20 +  1162296 I

a score=431.000000
s ce10.chrX             1329817 10 + 17718866 TTTCCTGACT
s caeJap4.Scaffold17966  130837 10 -   140921 ttctcTAATT
i caeJap4.Scaffold17966 I 1 C 0
e caePb3.Scfld02_62      512435 59 -   783054 I
e cb4.chrX               113790 49 + 21540570 I
e caeSp111.Scaffold548    15386 124 +    67506 I
e caeRem4.Crem_Contig24  382847 20 +  1162296 I

a score=-177.000000
s ce10.chrX             1329827 22 + 17718866 TTTTTAGAAAAAA--CCGGCAAAA
s caeSp111.Scaffold548    15510 24 +    67506 tttcaagaaagaaTTCTAccaaag
i caeSp111.Scaffold548  I 124 C 0
s caeJap4.Scaffold17966  130847 23 -   140921 -TTATATAGAGATTTccggttttt
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      512435 59 -   783054 I
e cb4.chrX               113790 49 + 21540570 I
e caeRem4.Crem_Contig24  382847 20 +  1162296 I

a score=-1768.000000
s ce10.chrX             1329849 5 + 17718866 TTGCC---
s caeRem4.Crem_Contig24  382867 5 +  1162296 ttttc---
i caeRem4.Crem_Contig24 I 20 C 0
s caeSp111.Scaffold548    15534 3 +    67506 --ttc---
i caeSp111.Scaffold548  C 0 I 6
s caeJap4.Scaffold17966  130870 5 -   140921 ---ttaaa
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      512435 59 -   783054 I
e cb4.chrX               113790 49 + 21540570 I

a score=76298.000000
s ce10.chrX             1329854 81 + 17718866 AACTTACGTCGTTGTAGTCATCGTTGAAGCTAGGTAGGCTTGTTCCTGTTCGCTTATTGGAAAGCTCTCCCAACGAGTCAT
s cb4.chrX               113839 81 + 21540570 AACTCACGTAGTTGTGGTTGTTGTAGACGCTAGATACGCTTGCTCTTGTTCGCTGATTGGAAAAATTTCCCAACGCGTCAT
i cb4.chrX              I 49 I 10
s caeRem4.Crem_Contig24  382872 81 +  1162296 aaCATACGTTGTTGTTGTAGTAGTGGCCGCCAGATACGCTTGTTCCTGTTCGCTGATCGGGAAACTTTCCCAACGAGTCAT
i caeRem4.Crem_Contig24 C 0 I 10
s caeSp111.Scaffold548    15543 81 +    67506 agctTACGTTGTGGTTGTCATTGTAGAAGCTAGATATGCCTGTTCTTGTTCGCTGATTGGGAAACTCTCCCAACGAGTCAT
i caeSp111.Scaffold548  I 6 I 57
s caePb3.Scfld02_62      512494 81 -   783054 AACTTACGTAGTCGTTGGAGTTGTGGAGGCTAAGTATGCTTGTTCCTGTTCGCTGATTGGGAAACTTTCCCAACGAGTCAT
i caePb3.Scfld02_62     I 59 I 134
s caeJap4.Scaffold17966  130875 81 -   140921 aacatacgTTGCAGCGGTAGTGGTTGAAGCCAAATAGGCTTGTTCCTGTTCACTGATAGGAAAACTTTCCCAGCGGGTCAT
i caeJap4.Scaffold17966 C 0 C 0

a score=0.000000
s ce10.chrX             1329935 2 + 17718866 TT
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130956 0 -   140921 C
e cb4.chrX               113920 10 + 21540570 I
e caeSp111.Scaffold548    15624 57 +    67506 I
e caeRem4.Crem_Contig24  382953 10 +  1162296 I

a score=-954.000000
s ce10.chrX             1329937 21 + 17718866 TCTCTGTAATAATGAAATTTT
s cb4.chrX               113930 20 + 21540570 tctg-aaaaaactaaaacaat
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig24  382963 21 +  1162296 tctattaaaaaatgaattgaa
i caeRem4.Crem_Contig24 I 10 C 0
s caeJap4.Scaffold17966  130956 17 -   140921 ----CCTGTAAATGAAAACTT
i caeJap4.Scaffold17966 C 0 I 1438
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeSp111.Scaffold548    15624 57 +    67506 I

a score=70.000000
s ce10.chrX             1329958 36 + 17718866 CTAAGAAAAATATGATAGAGAATTGCAAAAA--------AGTGA
s cb4.chrX               113950 44 + 21540570 tttccaaaaatattgaaaggTTTTTCATGAATACAATATAATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  382984 31 +  1162296 tcgATGaaaa-----aaaGGACATTTACAAA--------AGTGA
i caeRem4.Crem_Contig24 C 0 I 46
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e caeSp111.Scaffold548    15624 57 +    67506 I

a score=520.000000
s ce10.chrX             1329994 39 + 17718866 TAGGAAACTTGCTTCCTGCTAAAAGAAAATGTTATAGTA
s cb4.chrX               113994 39 + 21540570 ACGAAGAGCTGTATATTCGAACAATAAAATAATATAGTA
i cb4.chrX              C 0 I 880
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e caeSp111.Scaffold548    15624 57 +    67506 I
e caeRem4.Crem_Contig24  383015 46 +  1162296 I

a score=0.000000
s ce10.chrX             1330033 640 + 17718866  
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I
e caeSp111.Scaffold548    15624  57 +    67506 I
e caeRem4.Crem_Contig24  383015  46 +  1162296 I

a score=706.000000
s ce10.chrX             1330673 28 + 17718866 ATAAAAACACAAAGAGCACAATAAGACT
s caeSp111.Scaffold548    15681 28 +    67506 acgaaaacaaaaaaggaaaaataggtga
i caeSp111.Scaffold548  I 57 C 0
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I
e caeRem4.Crem_Contig24  383015 46 +  1162296 I

a score=1435.000000
s ce10.chrX             1330701 12 + 17718866 AGACCAACATGT
s caeRem4.Crem_Contig24  383061 12 +  1162296 agaaaaatatgt
i caeRem4.Crem_Contig24 I 46 C 0
s caeSp111.Scaffold548    15709 12 +    67506 agcGCAAAATGT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      512575 134 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I

a score=27300.000000
s ce10.chrX             1330713 213 + 17718866 ----AAAAATGAAGA--------------GCCAAGCT-TTTTAACAATGTTTATCTCCCCAAAGCCCCACCACTCAATGG----------TCATAATTGACCTTTGAGAAGTCACCC-----------ACTCAGGTGG--CGGACTGGTC---------------------------------A--------------TGTCGTGTTTTGCTTTGTTTC-TTCATCATCTCTTATGTCCAATAATAATCGCAAATACAAC--ATCCTGTTCGAATGCTCG---GCGGCGGTGGCTCTCAAGATATACA
s caeRem4.Crem_Contig24  383073 246 +  1162296 aagATGGGATGAAGA--------------GG----TTGTCTCGACATTGTTTATC------GGGC----CCACTCGACGG---CTTTCGTTCATAATTGACCTTTGAGAAATCACCCAACCCACCCCCTTGTTGAAGG--AGGACTGGTC-----AGAATTAAGAGTGTGCG---GGTTGTCTAGTCTCTCTTTTCA-ACCcgtgttttgttttgtttc-ttca-----ttcTATGC---ACAATAATCGCAAATACTGCATATCCTGTT---CAAATCG--------GTCGGATCTCGAGAGATACA
i caeRem4.Crem_Contig24 C 0 I 844
s caeSp111.Scaffold548    15721 253 +    67506 -----ATAATGAAGAAAGTGAACGAAGAGGACTTCTTGTTGTAACAATGTTTATC-------AGC----CCACTCTACGG-GACTTTCGTTTATGATTGACCTTCGAGAAGTTACCC----------TCTCGAAATGGAAAGTGCTGGTCATAG-AGAATTTAGAGTGTGTGTTAGGTTGCTCA--CTCTTCTCTCGACCCcgtgttttgttttgtttcttcgc-----TTCTATGT---ACAATGACC---------GCATATCCTGTT---ATACTTG---CCAG-TGAAGCTTTGAAGAGATAC-
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      512709 247 -   783054 ----aataatgaagA--------------GCCTTCTTGTTCTAACAATGTTTATC-------AGT----CCACTTGACGGAGCCTTTCGTTTATAATTGACCTTTGAGAAGTCACCA-----------CTATAGGTGG--AGGACCGGTCAGAGAAAAATGTAGAGTGGGTG---AGCTAAACA--TTCCTTGTTCG-CCCcgtgttttgttttgtttc-tcaa-----ttctATGT---ACAATAATCGCAAATACAGCATATCCTGTT---ATACCTGGAAAAAG-AGAGCCTCTCAAGAAATACA
i caePb3.Scfld02_62     I 134 I 661
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I

a score=524.000000
s ce10.chrX             1330926 35 + 17718866 ATATGCTTAAGCTTAAGCCTAACATCCACTTCATC
s caeSp111.Scaffold548    15974 28 +    67506 --ATGC--AAACTCAA---TAATGTTCAACTTATC
i caeSp111.Scaffold548  C 0 I 456
e caePb3.Scfld02_62      512956 661 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I
e caeRem4.Crem_Contig24  383319 844 +  1162296 I

a score=0.000000
s ce10.chrX             1330961 1227 + 17718866  
e caePb3.Scfld02_62      512956  661 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033  880 + 21540570 I
e caeSp111.Scaffold548    16002  456 +    67506 I
e caeRem4.Crem_Contig24  383319  844 +  1162296 I

a score=222.000000
s ce10.chrX             1332188 93 + 17718866 AAATCAAAAAATTTCGAAAAAAAAACCGATCAATGTTGATAAAGCATTTAGTGATTTTAATGAGTTCCCCTTCCAATCACAGAACACATCGAG
s caeRem4.Crem_Contig24  384163 79 +  1162296 aaatcaaaa----ttgaaaagcaAAAAGGTCAGAGCACTGATAGCATCT---GATATCAGAGAATTCTC-----AATAACGCGAACTGTCT--
i caeRem4.Crem_Contig24 I 844 C 0
e caePb3.Scfld02_62      512956 661 -   783054 I
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I
e caeSp111.Scaffold548    16002 456 +    67506 I

a score=3009.000000
s ce10.chrX             1332281 24 + 17718866 CGATACATATCGCTGCTCGGTCAC
s caeRem4.Crem_Contig24  384242 15 +  1162296 CGATACATATCG---------CAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    16458 15 +    67506 CGATAcaaatcg---------gag
i caeSp111.Scaffold548  I 456 C 0
s caePb3.Scfld02_62      513617 15 -   783054 CGATACaaatcc---------aat
i caePb3.Scfld02_62     I 661 C 0
e caeJap4.Scaffold17966  130973 1438 -   140921 I
e cb4.chrX               114033 880 + 21540570 I

a score=2108.000000
s ce10.chrX             1332305 24 + 17718866 AAAAACAAACAA------GGTGGCTCCGCG
s caeRem4.Crem_Contig24  384257 28 +  1162296 GAAAACAAACAA-GCCCTATACACC-CGCG
i caeRem4.Crem_Contig24 C 0 I 6
s caeSp111.Scaffold548    16473 30 +    67506 aaaaacaaacaactCTCCCAACGCCGCCcg
i caeSp111.Scaffold548  C 0 I 8
s caePb3.Scfld02_62      513632 23 -   783054 aaaaacaaacaa-------aacaccccgcg
i caePb3.Scfld02_62     C 0 I 7
s caeJap4.Scaffold17966  132411 27 -   140921 aaaaacaaacaa-tgaaAAGAGAAACTG--
i caeJap4.Scaffold17966 I 1438 C 0
e cb4.chrX               114033 880 + 21540570 I

a score=48435.000000
s ce10.chrX             1332329 61 + 17718866 AGCAATAGACCTCACCTCCCTCCGGTCATTAGCCGATAAGAAAATTGACAGTTTAGTCATG
s cb4.chrX               114913 57 + 21540570 AGCGATGGAGCTACC----CGGTGGTCATTAGCTAATAAGAAAATTGACAGATTGGTCATG
i cb4.chrX              I 880 C 0
s caeRem4.Crem_Contig24  384291 58 +  1162296 AGCAATAGAGCCCCC---ACGGTGGTCATTAGCCGATAAGAAAATTGACAGTTTGGTCATG
i caeRem4.Crem_Contig24 I 6 C 0
s caeSp111.Scaffold548    16511 57 +    67506 agaaatcgaGCTCAT----CGGTGGTCATTAGCCGATAAGAAAATTGACAGTTTCGTCATG
i caeSp111.Scaffold548  I 8 C 0
s caePb3.Scfld02_62      513662 57 -   783054 agaaatgggCCTCAC----GGACGGTCATCAGCCGATAAGAAAACTGACAGTCTGGTCATG
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold17966  132438 59 -   140921 AGCAATAGACAGCAC--AGTCTTGGTCATTAGCCGATAAGAAAAGTGACAGTTTCGTCATG
i caeJap4.Scaffold17966 C 0 I 619

a score=9236.000000
s ce10.chrX             1332390 45 + 17718866 AAGGGATCGACGCGGGATTGGACAGTTTGC--------ACTTCCCGTTCGTTT
s cb4.chrX               114970 33 + 21540570 AAGG----------------GATAGTTCGC----GCTCGTTTCCTATTTGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  384349 36 +  1162296 AAGGGAC-------------GACAGTTTGC----ACTCACTTCCCGTTCGCCT
i caeRem4.Crem_Contig24 C 0 I 5
s caeSp111.Scaffold548    16568 44 +    67506 AAAAGCTCC--------TATGACAGTTTGC-TCTACTCACTTCCCGttcgatc
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      513719 42 -   783054 AAAGACTCC-----------GACATTTTGCGTTTCTTCACTTCCCGTTCGTTT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I

a score=-42.000000
s ce10.chrX             1332435 1 + 17718866 C
s cb4.chrX               115003 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    16612 1 +    67506 a
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      513761 1 -   783054 C
i caePb3.Scfld02_62     C 0 I 15
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeRem4.Crem_Contig24  384385 5 +  1162296 I

a score=38.000000
s ce10.chrX             1332436 1 + 17718866 G
s cb4.chrX               115004 1 + 21540570 G
i cb4.chrX              C 0 I 112
s caeSp111.Scaffold548    16613 1 +    67506 a
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      513762 15 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeRem4.Crem_Contig24  384385 5 +  1162296 I

a score=273.000000
s ce10.chrX             1332437 3 + 17718866 AAA
s caeSp111.Scaffold548    16614 3 +    67506 aaa
i caeSp111.Scaffold548  C 0 I 56
e caePb3.Scfld02_62      513762 15 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115005 112 + 21540570 I
e caeRem4.Crem_Contig24  384385 5 +  1162296 I

a score=0.000000
s ce10.chrX             1332440 1217 + 17718866  
e caePb3.Scfld02_62      513762   15 -   783054 I
e caeJap4.Scaffold17966  132497  619 -   140921 I
e cb4.chrX               115005  112 + 21540570 I
e caeSp111.Scaffold548    16617   56 +    67506 I
e caeRem4.Crem_Contig24  384385    5 +  1162296 I

a score=472.000000
s ce10.chrX             1333657 30 + 17718866 TTTAATTTACAGGAAATTTAACTTTACAAA
s caeRem4.Crem_Contig24  384390 23 +  1162296 TTtgatttccaaaatattt-------cgga
i caeRem4.Crem_Contig24 I 5 C 0
e caePb3.Scfld02_62      513762 15 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115005 112 + 21540570 I
e caeSp111.Scaffold548    16617 56 +    67506 I

a score=-2621.000000
s ce10.chrX             1333687 65 + 17718866 --AAAAATTCAAAAAACT----AAAATTCC----ACAGACCAGAACCAAA-AAAAAATGCTCATGAACATGTGGCG
s caeRem4.Crem_Contig24  384413 66 +  1162296 ataatttcaaaacgaacaggtgaaaataataggaaaaaagtaaaaacaagGCAAGAATGATTGGAA----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      513777 54 -   783054 --AAgaataataaaaactttcaaaaatcat----gaagatcaaaaa-----cagaaatcattTCG-----------
i caePb3.Scfld02_62     I 15 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115005 112 + 21540570 I
e caeSp111.Scaffold548    16617 56 +    67506 I

a score=1122.000000
s ce10.chrX             1333752 32 + 17718866 CTGATTCGTG-AGAAGTTGTACATGGCTGGACA
s caeRem4.Crem_Contig24  384479 22 +  1162296 -CGATTCGTG-AGTGGTTGTATAG---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    16673 25 +    67506 CTGATTCGTG-AGTAGGTTTGCATA----G---
i caeSp111.Scaffold548  I 56 C 0
s caePb3.Scfld02_62      513831 28 -   783054 CTGATTCGTGAAAGAGGTGTACAGAA--GA---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115005 112 + 21540570 I

a score=44979.000000
s ce10.chrX             1333784 152 + 17718866 ACAAGCCCTGTTAAGGGTGGGGTAGGCGTTTGAGTG--TATGAATCAGTCAAGTA--CCCCCCCCCCCCCCCCCCAACCAAATACGAACCGTTTGTTTTTCCAAG-ACCGCACAGAATGCATGGAGAGGGCGACTGGTCCAGGCTGTTTAAATAAAG
s cb4.chrX               115117 133 + 21540570 ACAAGCCCAGTTAATACG----------TTCAAGTA--TATGATTCAGTCAAGTA--CTTGCAGTCAAACTC-----AGAAAAAACaacgttttgttttttcaaccACCGCACAGAATTCAT-ATGAAACA----GGTCCCGGCTGTTCAAACAAAT
i cb4.chrX              I 112 C 0
s caeRem4.Crem_Contig24  384501 128 +  1162296 ACAAGCCCAGTTAAGACT----------GTCGAGTG--TATGAATCAGTCAAGTA--CTTGCAGTCAGTCC-----------AAAAAACGGTTTGTTTTTTCACCACCCGCACAGAATGCATGAGGACGGG----GGTCCAAGCTGTTCAAACAAGG
i caeRem4.Crem_Contig24 C 0 I 243
s caeSp111.Scaffold548    16698 123 +    67506 ACAAGCCCAGTTAATACT--------AAGTCGAGTGTATATGAATCAGTCAAGTA--CCTCCCTGTA---------------GGAAAacgatttgttttttca---ctcGTATAGAATGCATGTGAGTGGA----GGTTCAAGCTGTTCAAATAA--
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      513859 121 -   783054 ACAAGCCCAGTTAAGACA--------TAGTCGAGTGTATATGAATCAGTCAAGTACTCCTCCC---------------------AAAACCGTTTGTTTTTTCA---CCCGCACAGAATGCATGAGAGTGGA----GGTCCAGGCTGTTCAAATAAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I

a score=-3590.000000
s ce10.chrX             1333936 26 + 17718866 CATTTTTCGAAATTTTGGTCAATTTT
s cb4.chrX               115250  8 + 21540570 -----------AAAACGAT-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    16821 12 +    67506 --------------TCATTCACCCTT
i caeSp111.Scaffold548  C 0 I 2
s caePb3.Scfld02_62      513980 13 -   783054 -------------TACGGtcagattt
i caePb3.Scfld02_62     C 0 I 35
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=-577.000000
s ce10.chrX             1333962 40 + 17718866 TTGGGGGACACGCAGTATATTATGAAATTTTTTTTTGAGT
s cb4.chrX               115258 40 + 21540570 TAGAGGTATAcgaattattttgaaaagtacattttttagt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    16835 17 +    67506 TCGGGGAATGTG-ATTAC----------------------
i caeSp111.Scaffold548  I 2 C 0
e caePb3.Scfld02_62      513993 35 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=611.000000
s ce10.chrX             1334002 3 + 17718866 GGT
s cb4.chrX               115298 3 + 21540570 gat
i cb4.chrX              C 0 I 152
s caePb3.Scfld02_62      514028 3 -   783054 GGT
i caePb3.Scfld02_62     I 35 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeSp111.Scaffold548    16852 0 +    67506 C
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=-10067.000000
s ce10.chrX             1334005 242 + 17718866 AAATGATGTCATTGTGTTTGAGCAGGGAATTAGGCTTAAGAGGTCCCAAAATAGGAAATATTCTGTAAACCAACCATTTTGAAACTAAAATCTGTAGCAGCTACTATGTACAACAGAAA---ATAAAACTTCAGAAAATAAGAATTTTTATTCGAAAACAGTTAAATACTCTAGGTCAGTGAAAATTT-TGGTCAGTGCAAAAAGTTGGTCAGTGCAAAAAGTTGGTCAGTGCAAAAAGTTGGCCA
s caeSp111.Scaffold548    16852 142 +    67506 -AAGGATG-------GCTTGTGTA----------CT--------------ATAAGAAACATAATgt--------------------------------------------catcagaaa---atgaaggtTC----ATTTTTTAGTCTCGTAGATAAat--------------tattattgaaaacttACTTTCAGTTCAATagattgttgaa---aaatatgtgCTAAATAT----ATTTTGCCA
i caeSp111.Scaffold548  C 0 I 100
s caePb3.Scfld02_62      514031 143 -   783054 AAATGGTG-------GAACGATTG----------------------------AAATGACATCATGT--------------------------------------------GAtaaaaaatctatgaaaagG-----ATTGGGAAATCGAATTTGAGAAT--------------GTTGATTACCGAGTTATCCTTTCTTTGATGGAAACCTAGAAGTAAAgtcattttcaata-----acttgAACA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115301 152 + 21540570 I
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=-1318.000000
s ce10.chrX             1334247 115 + 17718866 GTGCACAAAGATGGTCAGTGCAAAATTGATGATTAGTCAATACAACTTAATAAATTCGATTTTTAACAACAGTCAAATACTTCATTCACGATTTTCAAAATGAAATACTGGTAAA
s caePb3.Scfld02_62      514174  58 -   783054 GAGGA-----------------------ATTTTTAGAAGATGGTATCTAATGAATTAA----------------------------CACCGCTTCCAAACTG------TGAaaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115301 152 + 21540570 I
e caeSp111.Scaffold548    16994 100 +    67506 I
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=-2091.000000
s ce10.chrX             1334362 64 + 17718866 ACAAAGTGAGTTCAAAAATAAATCCGTCAACTCTCCGACTCAAAAACGGAAGCAACTCACCAAC
s caeSp111.Scaffold548    17094 54 +    67506 ACATTGCGAGCTCaaagaaacag-cgaaaaatttc---------aacgtaacgaaataacgagt
i caeSp111.Scaffold548  I 100 C 0
s caePb3.Scfld02_62      514232 48 -   783054 ------ccaaccaaaaaaatc------aaagttccgG----AGAGACATAGCAAAAAAGTCAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115301 152 + 21540570 I
e caeRem4.Crem_Contig24  384629 243 +  1162296 I

a score=-3099.000000
s ce10.chrX             1334426 21 + 17718866 AACCAAAAAAAAAAAGAATCA----
s caeRem4.Crem_Contig24  384872 21 +  1162296 ----aatcaccgaaaaaagCCAGCC
i caeRem4.Crem_Contig24 I 243 I 1
s caeSp111.Scaffold548    17148 16 +    67506 -----a-aaaagaaaaaaccca---
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      514280 17 -   783054 -----ACaagatcaaaaacaag---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115301 152 + 21540570 I

a score=46305.000000
s ce10.chrX             1334447 215 + 17718866 AATTCACAGACTATTGGGGGATGAGT----TTGCGAACCGTGAGTTCAGCCTTT----------CGCTGTTTTGTTTTGAGATTTACAAAACAGAGACACCCGGG---AAACGGCTTG---------------------------AGCTGACCAAGTACAAAACATACG-----CACTCCCCTCCCCCCCTCCAATTCGATGACCGGTGTA---TCTTCCTC--TTTTCGGC----------CGCTTTATTTGTTAGGGTGCGGGTTTACAAGAGGTTG
s cb4.chrX               115453 222 + 21540570 AGTTCGAAAAAAGTCAAAGGATGAGTTTGCTTGCACACCGTGACCTtag-ttttgtatt-----ttttgtttttgtttaagATTTACACC----AAGTCCTTAAGTAAAAACGATAGA--------------GAACGAGGTGAATAGTTTACCGAGTGAACAACCGATT-----GA----------------------GATGACCAGTGTATCCTCTTcctattattttgaaaaca------tccTTTATTTGTTCCGGTGCGCTTTTACAAAAGGATG
i cb4.chrX              I 152 I 109
s caeRem4.Crem_Contig24  384894 226 +  1162296 AGTC--AGAAATCTCGAAAGATGAGT----TTGCACACCGtgatttgagtttttgtgtcactggttttgtttttgtttgagatTTACAAA----ACACACCCGGG---AAGCGACACAAACTGACTGTGTCGGAAAAGGGGAGATAGTTGACCAAGTAGAAAACATACG-----TAC--------------------CGATGACCAATGta---tcttcctctttttccga------------CCTTTATTTGTTAGGGTGCGGTTTTACAAGAGGATG
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold548    17164 204 +    67506 --------aaatctCGAA-GATAAGT----TTGCACACCGTG-----AGATCTTATTTCTctggttttgtttttgttttggattTACAAA----AGAGATCGGAA---AAACGACACA------------------------CATAGTTGTCAAAGTACAAAACATATA-----GACCCTCC---------------CGATGACTATTGTA---TCTTCCTC--TTTGCGGCGAAAGCCGACGTTTTTGTTTGTTAGGG-GTGGTTTCACAAGAGGATG
i caeSp111.Scaffold548  C 0 I 217
s caePb3.Scfld02_62      514297 200 -   783054 --------aaatctcAAAGGATGAGT----TTGTACATCGTGCGTTTAGTTTTTGTCTGGctggttttgtttttatttgtgatTTATAAG----AGAGCCGGTAA---AAACGACAC----------------------------AGTTGACCGAGAACAACACATATACCCTTACCTTTCT---------------CGATGACCAATGTA---TCTTCCTCTTTTTGCGGTGA--------TCTTTTGTTTGT------GCAGTTTTACAAGAGGATA
i caePb3.Scfld02_62     C 0 I 11
e caeJap4.Scaffold17966  132497 619 -   140921 I

a score=396.000000
s ce10.chrX             1334662 3 + 17718866 GTT
s caeRem4.Crem_Contig24  385120 3 +  1162296 CTT
i caeRem4.Crem_Contig24 C 0 I 241
s caePb3.Scfld02_62      514508 3 -   783054 GTT
i caePb3.Scfld02_62     I 11 C 0
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115675 109 + 21540570 I
e caeSp111.Scaffold548    17368 217 +    67506 I

a score=577.000000
s ce10.chrX             1334665 41 + 17718866 ----ACACAATGTAAAGAGAATAGTTTTTGTGGACACGTGTTATG
s caePb3.Scfld02_62      514511 44 -   783054 TTGAACACACACAAAAGAAAAGGGATTAGGT-GACGAGtattttg
i caePb3.Scfld02_62     C 0 I 214
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115675 109 + 21540570 I
e caeSp111.Scaffold548    17368 217 +    67506 I
e caeRem4.Crem_Contig24  385123 241 +  1162296 I

a score=0.000000
s ce10.chrX             1334706 650 + 17718866  
e caePb3.Scfld02_62      514555 214 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e cb4.chrX               115675 109 + 21540570 I
e caeSp111.Scaffold548    17368 217 +    67506 I
e caeRem4.Crem_Contig24  385123 241 +  1162296 I

a score=998.000000
s ce10.chrX             1335356 24 + 17718866 AAAAAAGGTAATAACAAGTTTATT
s cb4.chrX               115784 24 + 21540570 AAATAGGGGAAAAACAAATTAACT
i cb4.chrX              I 109 C 0
e caePb3.Scfld02_62      514555 214 -   783054 I
e caeJap4.Scaffold17966  132497 619 -   140921 I
e caeSp111.Scaffold548    17368 217 +    67506 I
e caeRem4.Crem_Contig24  385123 241 +  1162296 I

a score=-3742.000000
s ce10.chrX             1335380 77 + 17718866 ACAACAATAAAGAAATCCCTGAACATTATTATATTATATA-----------CATATTCAATGTACATTTCTCGGTGAAAATT-------AATAAT
s cb4.chrX               115808 57 + 21540570 C----------GAAGTTTCGTAATACTGTCACAATATGTA-----------CATTATATCTaaaca---------gaaaatt-------gatt-t
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17966  133116 79 -   140921 ---ACAATAA-GAAAGAGCAGAATAATTTATTTCTACATATTTagcaatttcatttttaattaaaa---------ggGATTTTTATACAGAT---
i caeJap4.Scaffold17966 I 619 C 0
e caePb3.Scfld02_62      514555 214 -   783054 I
e caeSp111.Scaffold548    17368 217 +    67506 I
e caeRem4.Crem_Contig24  385123 241 +  1162296 I

a score=-1294.000000
s ce10.chrX             1335457 1 + 17718866 -T
s cb4.chrX               115865 1 + 21540570 -t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  385364 1 +  1162296 -t
i caeRem4.Crem_Contig24 I 241 C 0
s caeSp111.Scaffold548    17585 1 +    67506 -T
i caeSp111.Scaffold548  I 217 C 0
s caeJap4.Scaffold17966  133195 1 -   140921 G-
i caeJap4.Scaffold17966 C 0 C 0
e caePb3.Scfld02_62      514555 214 -   783054 I

a score=100394.000000
s ce10.chrX             1335458 192 + 17718866 TCAGTGCCTGCAATCTCGTTTTTCATTTCCAAATCCCAATTCCAAGTTGATAGATCCCAGGTCGAAAACTGGGATTTTGTACAAGTCAGTGCTCACGTACTTTTGAGGAATGTCCCAGAATAATCGTTTTTGGCATTTCTAAAATTAA----AAATATCA-----AACTT----------------AAAAAATGAGA------------------------------AAATA-----------------------------AAAACT-TACATGATT
s cb4.chrX               115866 190 + 21540570 tcagtgtcTGCAATCTCGTTTTTCATTTCCGAATCCCAATTCCAAGTTGATGGACCCAAGATTGAAAACAGGAATTTTGTACAAATCCGTGGTCACATATTTCTGTGGGATGTTCCAGAATAgccttttttgacatttctgaaAGTACATTGCAAATTGT-----AA-TT----------------AATGAACAAAA----------------------------------------------------------------CACGCT-CACCACCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  385365 186 +  1162296 tCAGTGTCTGCAGTCTCGCTTCTCATTTCCAAATCCCAATTCCAAGTTGATCGATCCAAGGTTGAAAACTGGGATTTGATGCAAATCGGTGCTCACATATTTCTGGGGGATATGCCAAAAGAGACGTTTTTGGCATttctgaa--taca---aaaattga-----agttt----------------ggCTAGTCAAG----------------------------------------------------------------TGTACA-TACCACATT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    17586 188 +    67506 TCAATGCTTGcagtctcttttctcattacCAAAGCCTAGCTCCAAGTTGATGGAACCCAAATTGAAAACCGGAATTTTGTAAAGATCAGTGCTCACGTATTTTTGCGGAATGTCCCAGAACAGTCGTTTTTGGCATCTCTGATA-AAAAT--CAATGTGA----CAGTTT--------------------TACCAAA------------------------------------------CCG-------------------GAAACT-AACGATTTC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      514769 229 -   783054 TCAATGCCTGCagtctcttttctcattcccAAATCCCAACTCCAAGTTGATCGATCCcaaattgaaaacaggaaTCTTGTACAGGTCGGTGCTTACATACTTCTGTGGAATATCCCAAAACAGTCGTTTCTGgcatttctgaaagaaaaa--aaaaatgatttttagtttcttaTCAGCTATTTATAATATTCTAAA------------------------------AAGTTATC---CCCGTAATAGA------------AAAACT-TACCACATT
i caePb3.Scfld02_62     I 214 C 0
s caeJap4.Scaffold17966  133196 264 -   140921 TTAGTGCTTGCAGTCACGTTTCTCATTTCCAAAACCCAATTCCAAGTTTATTGAGCCTATATTGAAAACTGGTATTTGGTAAAGGTCAATGCTGATGTATTTAGTTGGTATATCCCAGAACAGTCGTTTCTGACACTTCTGAAAATAT----AGAAATAA-----AGTTG----CGCTCTACCGATGATACGCAAaatcgggggtgctacggtatagaactcgcacggaatagaacggcgcggaatagaaccggctgaaatgaaactgtactgGATT
i caeJap4.Scaffold17966 C 0 I 137

a score=112646.000000
s ce10.chrX             1335650 145 + 17718866 ACCATCATTGCAATCATGATAAATTTTCAGGGCTGGCTCAATTACAGCTTTCTCATAAGTTCCTCCAGTAACGTGGAATTTTCCCTCTTCGTCGGTTTTCTTTTCATCTAGCAGATCGTCTCTGTCGTCACCTGAAA----ATTAAAAT
s cb4.chrX               116056 139 + 21540570 TTCATCGTTACAATCGTGATAAATTTTTAGTGCTGGCTCAATTGTTCCTTTCTCGAAAGTTCCACCTGTCACGTGAAATTTACCTTCTTCATCAGTTCTCTTCTCATCCAAAAGGTCGTCTCGGTCATCACCTATAA----------AT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  385551 139 +  1162296 CTCATCATTGCAGTCATGGTAGATTTTGAGTGCTGGCTCAATTGTTCCTCTCTCATAAGTTCCTCCAGTGACATGGAATTTACCTTCATcgtctgttttcttttcatccaATAGGTCGTCTCGGTCTCTTCCTGGAA----------TT
i caeRem4.Crem_Contig24 C 0 I 11
s caeSp111.Scaffold548    17774 149 +    67506 TCCGTCATTGCAATCATGATAAATTTTCAGTGCCGGTTCAATCATAGCTTTTTCATATGTCCCTCCAGTCACATGAAACTTTCCCTCATCATCGGTACGTTTTTCATCAAGAAGATCGTCACGGTCATCACCTGAAAGCACATTACTAT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      514998 149 -   783054 TCCGTCATTGCAATCATGATAGATTTTGAGCGCTGGCTCAATTACAACTTTTTCGTACGTTCCTCCAGTAACATGgaattttccttcttcatctgtTCGTTTTTCATCAAGCAAGTCATCACGATCGTCTCCTGCAATACTCTTAAAAT
i caePb3.Scfld02_62     C 0 I 233
s caeJap4.Scaffold17966  133597 145 -   140921 ACCATCATTACAATCGTGGTAAATTTTCAACGCAGGTTCTATGGTTGCTTTTTCATATGTTCCACCTGTTACATGAAATTTACCATCCTCGTCAGTTTTTCTTTCATCCAACAGGTCATCTCGATCATCTCCTAAAA----CATATAAT
i caeJap4.Scaffold17966 I 137 C 0

a score=-1796.000000
s ce10.chrX             1335795 5 + 17718866 GT---TCT
s cb4.chrX               116197 3 + 21540570 -----ACT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  385701 8 +  1162296 ATACTACT
i caeRem4.Crem_Contig24 I 11 C 0
s caeSp111.Scaffold548    17923 3 +    67506 -----ACC
i caeSp111.Scaffold548  C 0 C 0
s caeJap4.Scaffold17966  133742 5 -   140921 ---TTTTT
i caeJap4.Scaffold17966 C 0 I 40
e caePb3.Scfld02_62      515147 233 -   783054 I

a score=-3090.000000
s ce10.chrX             1335800 17 + 17718866 AGATGAAAAACATT----TTT
s cb4.chrX               116200 14 + 21540570 Tgtaagaaaataat-------
i cb4.chrX              C 0 I 2343
s caeRem4.Crem_Contig24  385709 14 +  1162296 TGAAGCAGAACAAT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    17926 18 +    67506 TATCTAAACACCGCTCTT---
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747 40 -   140921 I

a score=1475.000000
s ce10.chrX             1335817 20 + 17718866 CAGACTACAAAATTCAAAAT
s caeRem4.Crem_Contig24  385723 20 +  1162296 CAGtactcaaaactcaaaat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    17944 20 +    67506 TTGTCCACTAATCTCCCAAT
i caeSp111.Scaffold548  C 0 C 0
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747 40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I

a score=-76.000000
s ce10.chrX             1335837 4 + 17718866 TCCG
s caeRem4.Crem_Contig24  385743 4 +  1162296 gtca
i caeRem4.Crem_Contig24 C 0 I 68
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747 40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964 0 +    67506 C

a score=0.000000
s ce10.chrX             1335841 95 + 17718866 GTCTTCATGTCATTTGTTTTGAAATAGTATTTGATATTTGTTTGATAAGAAGTAAGCGCCTGACTCTATTTTGCATACTTTGTAGCACTGACATT
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747 40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964  0 +    67506 C
e caeRem4.Crem_Contig24  385747 68 +  1162296 I

a score=-31.000000
s ce10.chrX             1335936 234 + 17718866 ATTTTTGTGTAGAAATGTGGTTTTTTTTCGATTCTCCTTTTAAAAAAATCAAGAGAAAAATCGAAAAACTTCCAATGACGCCCTTGTTCCCAGCACATAAAAATTACTATATATAGAATTGTTTCCAAAATATTAAAG--TTCGATCTGA-ATTTTTGATGTGCATTATTTCACTACTTTCGATGCACTTAAAATTTCTAAAATCTGTTTTTGCAGACATT-------TAATTTTTTTTTGAAA
s caeRem4.Crem_Contig24  385815 201 +  1162296 atttttg----------------tttcttgtttcacagttttctaatttgaaaagaaaact--------------------atttgtGCTCAGT-TAGAAACACTACACTGTTTATTAGGATTgtaaaaacactaaaaacttttATCAGGCACAATTAAAGTGAGGGAATTCACATTTTCCGACAT-TTTGACAGGTTTACGATGCGTTTC-----ACATTTGTGCCATAGTgtcatttcgaaa
i caeRem4.Crem_Contig24 I 68 I 245
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747  40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964   0 +    67506 C

a score=0.000000
s ce10.chrX             1336170 241 + 17718866 TAAACGGTGTAAGGTGAACCTTCTCGACCGTTTAAAAAAATTATGGATAAATTTTCTATTTTTTTTCCAGAAAATTAAAAATTTCTAAAATCTTCCAGGTATACGTAATAACATTTGAACATTTTTAAATCATCAAAACTTGGCAGAACCCGGATTCGGAGTAACTTTATGGAAACCGATAGTATTTTTTTAGAAACACTGAAAATTTTCAGATCGATAAAATTACCGATAGAATTGTCGT
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747  40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964   0 +    67506 C
e caeRem4.Crem_Contig24  386016 245 +  1162296 I

a score=249.000000
s ce10.chrX             1336411  97 + 17718866 TAAGAATTTTTTGTGAAAAA---------------------TTTTTGTGAATTTTGTGAAACAAGAAATATTTTT-----------ATTCTAATAGGAGATTAGAAATCTTTTTTTTTGTAAAATTTTG
s caeRem4.Crem_Contig24  386261 126 +  1162296 TAAGCTCGTTTcatgagaaaacaaaaaacacggCGGATACCTCACaactatttttgagaaaaaaaaaacaattttcgagggaaacaacttgaa---aagtttgaaaatgttttatgacTGGAAATTTCA
i caeRem4.Crem_Contig24 I 245 I 35
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747  40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964   0 +    67506 C

a score=0.000000
s ce10.chrX             1336508 30 + 17718866 TCAGCGCCAAGTTTTTGGTCAGTGCCAGTT
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747 40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964  0 +    67506 C
e caeRem4.Crem_Contig24  386387 35 +  1162296 I

a score=-1363.000000
s ce10.chrX             1336538 182 + 17718866 CAAGCTGAATACCACAAAAAAAAGTTAGGATCAAAATTTGACCAGAAAAGT-TTTCAAGCCAGAAAATGGTATCAATCATTTTGGGCCTCCAACAATTCCCTAAAATTTGGTAAATTCAATTTGGAAAATCTATTTTCAAAGTTTCCTACATCGAATCAATATAAAAGTATAACTTCAATCCC
s caeRem4.Crem_Contig24  386422 130 +  1162296 CACACTGCATGGTCTAGAAAAA----CTGATCTACAGTTGACACTTACAGTATCTCAA---ATACAATGATTTCTTTCAGTTT------------ATAACTAAGCATTTACTGGGTTTGATT---AAAA-----------------CTGTGACGG--CAATGTAGCAACAT------------
i caeRem4.Crem_Contig24 I 35 C 0
e caePb3.Scfld02_62      515147 233 -   783054 I
e caeJap4.Scaffold17966  133747  40 -   140921 I
e cb4.chrX               116214 2343 + 21540570 I
e caeSp111.Scaffold548    17964   0 +    67506 C

a score=300.000000
s ce10.chrX             1336720 1 + 17718866 C
s cb4.chrX               118557 1 + 21540570 C
i cb4.chrX              I 2343 C 0
s caePb3.Scfld02_62      515380 1 -   783054 C
i caePb3.Scfld02_62     I 233 C 0
e caeJap4.Scaffold17966  133747 40 -   140921 I
e caeSp111.Scaffold548    17964 0 +    67506 C
e caeRem4.Crem_Contig24  386552 0 +  1162296 C

a score=613.000000
s ce10.chrX             1336721 2 + 17718866 TC
s cb4.chrX               118558 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold548    17964 2 +    67506 TT
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      515381 2 -   783054 TC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold17966  133747 40 -   140921 I
e caeRem4.Crem_Contig24  386552 0 +  1162296 C

a score=75057.000000
s ce10.chrX             1336723 103 + 17718866 ACCATGATCTTTGTCAATTAATTTCACTGGAATCCCAATGAGCGGCTTGTCCCCACAAAATAACCGCCCTGACGCGGAAATTGCTTGAATCGGAAGCTCATCG
s cb4.chrX               118560 103 + 21540570 ACCATGATCTTTGTCGATTAATTTCACAGGTACGTTCACAAGAGGATTGTCTCCACAAAATAATCTTCCTGACACGGACACTGCTTGAATAGGTAGTTCATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  386552 103 +  1162296 ACCATGGTCTCTATCAATAAGTTTAACTGGAACATTCACTAACGGCTCATCACCACAAAATAATCTTCCGGCAACTGAGACAGCTTGAATCGGTAGGTCATGC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    17966 103 +    67506 ACCATGATCTTTGTCAATAAGTTTTACTGGAACATTAACGAGAGGCACATCGCCACAAAACAATCTTCCAGCAGCCGAAACAGCTTGAATGGGTAGATCGTGC
i caeSp111.Scaffold548  C 0 C 0
s caePb3.Scfld02_62      515383 103 -   783054 ACCATGATCTTTATCAATGAGTTTGACAGGAACATTCACAAGTGGTTGATCTCCACAGAATAGTCTTCCAGATGCCGAAACTGCTTGTATAGGAAGTTCGTCA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold17966  133787 103 -   140921 accaTGATCCCTATCAATAAGTTTCACTGGAGCACCAACGACAGGAGAGTCACCACAGAACAGCCTGCCACTGACCGAAATTGCTTGAATCGGCAAATTGTTG
i caeJap4.Scaffold17966 I 40 N 0

a score=-8780.000000
s ce10.chrX             1336826 437 + 17718866  
s cb4.chrX               118663 396 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  386655 405 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold548    18069 366 +    67506  
i caeSp111.Scaffold548  C 0 N 0
s caePb3.Scfld02_62      515486 397 -   783054  
i caePb3.Scfld02_62     C 0 C 0

a score=-561.000000
s ce10.chrX             1337263 2 + 17718866 TT-
s cb4.chrX               119059 2 + 21540570 TT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  387060 2 +  1162296 TT-
i caeRem4.Crem_Contig24 C 0 N 0
s caePb3.Scfld02_62      515883 2 -   783054 -TG
i caePb3.Scfld02_62     C 0 I 16

a score=546.000000
s ce10.chrX         1337265 2 + 17718866 TT
s cb4.chrX           119061 2 + 21540570 TT
i cb4.chrX          C 0 N 0
s caePb3.Scfld02_62  515901 2 -   783054 tt
i caePb3.Scfld02_62 I 16 C 0

a score=985.000000
s ce10.chrX         1337267 52 + 17718866 GTAGTGGTTTG-TGTCTTGTCCGTATGATTG----ATGATTGATATAAGGTTTGCCG
s caePb3.Scfld02_62  515903 57 -   783054 atagaaatctGATATTTAGCATGTATGAttggaaaattgttgaaaagatGTTTGACG
i caePb3.Scfld02_62 C 0 N 0

a score=15113.000000
s ce10.chrX 1439355 296 + 17718866 TTCAAGACAAATATTTCCGGCCGTAGAGTGTCGCCTTTTGCTCAAACGCCGGCGACTCAATGACGTCATCAATTTCGTAGAACGGATTCATGGCGTGCTTGATGTAGGTCTCGTACATCTCCTAAAAAATTGAGCTTTTAGTCAGTTGTCGGGCATTTTCAGAAT-----GTTTTTTACCTGGAAAAATTGCTTGATTCCCTCGTCGGCGCGATGTGTGTGAAGCATGATGAAGCGGATGCGGCTGGCGGTGACGAACGCGCTCACGTACCACTCGTTGAACTTGTCGACCATCTGAAATT
s cb4.chrX   628664 292 + 21540570 TTTATGAAAGATACTTCCGTCCATAGAGTGCAGCCTTCTGTTCAAACGCGATTGACTCGATAACATCATCTATTTCGTAGAAGGGATTCATTGCATGTTTGATGTACGTCTCATACATTTCCTGAAGATTAAAAGCCttg---------cgaattttttttaaataacaaGATTAAAACCTGGAAAAACTGTTTGATTCCTTCGTCCGCACGGTGAGTGTGGAGAATAATGAAACGAATGCGGCTCGCGGTGACAAATGCGCTAACGTACCATTCGTTGAACTTATCCACCATCTGCAACT
i cb4.chrX  N 0 I 34

a score=0.000000
s ce10.chrX 1439651 395 + 17718866 TAGAACTTTAAGTTGACATTGAGGGTAGCAATTGCCTTCTGATTTTTCTTCTGAAGTTTCTGATTTTTTCCGCTCTAACTACAGAAGCTGAAAATTCGCTAAAAGCTCCCGGCACTGACCAGAACTATCATGCACGTAAACTAACTGGGTTGACAATTTTCTCTCTACACTGACAAAGATTTTCCAGCTCAGGGCTTTCCAGCATTGACTGGACTATCATATTCAGAAATCAACTGGGCTGATGATACCCTCTCAGCTTTGACCTAAATTTTCCAACACTGATCACGTTCTGTTCATAAAATTTTCAGTTTTCAATTGCATCCGCACTGACCAAAACCTTCTCAGCACTGACCAAAACCTAGTCAGCACTGACAAAAACACATTTCCACCCGACA
e cb4.chrX   628956  34 + 21540570 I

a score=11278.000000
s ce10.chrX 1440046 427 + 17718866 CTCACCTTGAGGTACATCTGAGAAGTGGTCAGTGCGTGCTCGTCGACAATATCCAGCGCGGCGTGACCAATGTAGTGATTGAGATGCCGAGTGCCTTCCGACTCCTTCGTCTTCTTCTCGCCGACCGGGAAGTCCATCTCGAAGATCGGCTGGTCGCAGTGTCCAATGATCGCAAAGTAGAACTCCTTGGTTGCCATTTTGCCGGAGACGCTGAAAATCAGATTGGCTGAATTATTACTTCTGAAATTA-AAAGGGGAGAAGTA----GATCACAGAAGAAAAC-TGCCAACATTTTTAAAATAAAGTTTTCGAGTATTTATATTATGAAAAAGTT---------TTATTGAAAACAAACATCAAAAAAGTTCTCCAGAGACATAT------------TCTACAAAGAA--ACAGAAAGAAGGATTCCAAAAATCACAGCTGCAAGATAAGGCTTG
s cb4.chrX   628990 415 + 21540570 CTCACTTTCAAGTACATCTGAGTAGTGGTGAAGGCGTGCTCATCCACAATGTCAAGAGCAGCATGCCCAATGTAATGATTCAAGTGACGTGTCCCTTCTGATTCTTTGGTCTTTCTTTCACCAGCCGGAAAATCCATCTCAAAAATTGGCTGGTCAGAATGTCCGATAATCGCAAAGTAGAACTCTTTGTTAGCCAT-------------CTGAA--------------------TGCTTCTGTAACAATAAATTGAATGATTATCATGAACGATGAATAAAATATTCAGATCTGTCCAAAAcagattattgaaaaatgagtacCAAGAAAAAGCTATCCCCGAATTATttcattcacagaaaaaaaaa-----caaaaaatatattattgaCTCGGGTCTACTGACGATGActggaaaacggag--aaaatatCACATTTGCAAGA-AAGGCTAG
i cb4.chrX  I 34 I 96

a score=0.000000
s ce10.chrX 1440473 113 + 17718866 ATACATGATAACTAATGAGAGCGGAAAGAGAAAAATACCCAAAAAAAAACAATATATTACGGGTTGGAAAAAGAACTAATGGGGGGGGGGGTCAGAAATGTGACTAGAAATGT
e cb4.chrX   629405  96 + 21540570 I

a score=2429.000000
s ce10.chrX 1440586 258 + 17718866 GGAAAATGCaatttaatttaatttttttttCTTCCGCCACTAAGCTTGGCTC----ATC--------TCATCGTGATCCGCTTGCTGATCAAAGCGAGAGCGGAACGTCCGGCGAGGTGGCTGCTCGTCAAATCGATTTCTCCTCGGTGGCCGTTGATCCATATC--CTGGC-------CTGGAGCATCATCTTCTCCCTGTCTATCAAACCTACTGACAC--------------GGGCT----CTCTTAGTCGGAACGG-GATCCTGATACTGGGA--TCCATGTGCATTTGGGGATCC
s cb4.chrX   629501 285 + 21540570 GCAAAAAACATGCcgatcgaattttttttgttgggatTATCAAATATGGTGCCCGAATCCAGATCTGTCATTCTGTTCCGGTTTTTGATCAAAACGGGA------------GCGATGTGGGCGGTCATCAAAACGGCTTCTACGTGGAGGGCGGTTATCGACGTCAGCAGGCCCACTAGCTGATCCATCATCTTCT---TTTAAATCAAATCTGCTCGTGCGTTGACGTTTCGGTGGGCTCGAACCATCATTCGTAACATCGATATCGTTCCCGGAGTTTCCTTGTTCTGTAGGTGAGCC
i cb4.chrX  I 96 I 47

a score=0.000000
s ce10.chrX 1440844 26 + 17718866 TAGATGACCGCCATCATCATTGTACG
e cb4.chrX   629786 47 + 21540570 I

a score=20251.000000
s ce10.chrX 1440870 1679 + 17718866  
s cb4.chrX   629833 1653 + 21540570  
i cb4.chrX  I 47 I 1679

a score=0.000000
s ce10.chrX 1442549 2347 + 17718866  
e cb4.chrX   631486 1679 + 21540570 I

a score=4083.000000
s ce10.chrX 1444896 136 + 17718866 TTCTAAAGAGTTTT---CCACCTACCTCCATATTTCTGCCGCGTTGTCTGATCCTCGGGCTTCACTGGAGTCGTCTTCGATGTGGATGGCGCGGTGAGTGGTGTCGGTACGTAGACTGCTGAAAATTTGAAATTTAAAA
s cb4.chrX   633165 136 + 21540570 TTCAAAGTAGTTTGAGACTTCTTACCTCCATATTTTTGTCGTGTAGTTTTATCTTCCGGTTTGCTTGGCGTGACTTCAGATACAGCTGG---GTTGATAGGTGTTGGAATGTAGACGGCTGAAACGTGAATAATCAAAA
i cb4.chrX  I 1679 I 78288

a score=0.000000
s ce10.chrX 1445032 6288 + 17718866  
e cb4.chrX   633301 78288 + 21540570 I

a score=21263.000000
s ce10.chrX             1451320 310 + 17718866 AATTCTCAACTTTCAGCCCTGCTCCCTTTCCCCGGAAGAAATCCAGCGACGCCGTGCCCAACAAGACTCCCTCCGGCTTTTCCAGGACACGTTGGAGCAGGTCCGCCAGCTCGCAGAGCAACTCCAGGAGCAGTTCCGACAGGCGACGGAGCAAACCGCACGGATCCGAGAGGAGCAGAAAAAGATCCGACGAGCTATCCGAAGACAGAAAAAGTTGACTCAGAAGCGGC---GAAAAATGCTCGTAGAACGTGAGGTGAAGCGGAGACG---GGTCGCGAAGATGTTCTTTGCCTGCAGGTGAATTTT---------GAAATTG
s caeRem4.Crem_Contig24  922496 289 -  1162296 aattttca--tttcagccACATGCTCTCTCACAAGAAGAAATAGATAATCGGCGGATCCAGCAGAACACATTTCGACTTTTCCAAGAGACACTAGAGCAGGTCCGGGCGTTGGCGGAACAGATACAAG------------AAGGGATTGAGCAAACCGCACGGATTCAGGAAGAGCATAggaggattcagaaggcgATGAGACGGCAAAAAAGATTGAATCGGAAACGAGCACGTCAGATGGAGGAGCAAGATGAGC---AACGCCGATT---GGTCATTAAAATGTTCTTCTCCTGCAGGTGAGCCCC----------------
i caeRem4.Crem_Contig24 N 0 C 0
s caePb3.Scfld02_62      439432 305 +   783054 AATTTTCG--TTTCAGCCTCAAGCACTCTCTCAAGACGAAGTGGAAAGTCGGCGTGCACAGGACATCGCTATACGGCTTTTTCACCAAACATTCCATCAAATGCGTCTTCTGGCAGAAGAAATTCAAG------------CCGGATTGGAATATACGGCCCGGATTCAAGAAGAGCATAGACAAATCAAACGGGCTATGGCCAGACAGAGAAGATTGAaccggagaagaa---ggaagatgatGGAGGAAAGTGAAG---GACATAGAATTAATGTGATCAAAGCGTTCTTTTCATGCAGGTAAAATTTGTGAATTGAGAAATTG
i caePb3.Scfld02_62     N 0 I 130
e cb4.chrX               633301 78288 + 21540570 I

a score=-694.000000
s ce10.chrX             1451630 84 + 17718866 GCGTGAAAATTTGATACCTACTTGGACattaatttctattaatttctattaatttTGGAAATCAATAGTTTCTAAATACGTTTT
s caeRem4.Crem_Contig24  922785 39 -  1162296 -----------TGGTCCCTTTTTG------------------------------CTGGAAAAGattagtct-gaaat---tttt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      439737 130 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I

a score=-1881.000000
s ce10.chrX             1451714 29 + 17718866 -TCCGAAATTGGGTCC----------CAGAAAAAAACCAC----
s caeRem4.Crem_Contig24  922824 30 -  1162296 tttgacatgtGA--------------CAAAagcaaacatttcaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      439867 41 +   783054 -tcagaaaatgaGTCAATTTAGTgaccaaaaacgaaaatcat--
i caePb3.Scfld02_62     I 130 I 105
e cb4.chrX               633301 78288 + 21540570 I

a score=183.000000
s ce10.chrX             1451743 103 + 17718866 TTTTTTCCAAAGTTTCACCTCAAACCTCCGTCTGATAAAATGATAGTTATGCTCCGAATGCTCCAAATAATCTTCATCAACGTGTGACACTA--TACGAAATGTT
s caeRem4.Crem_Contig24  922854  73 -  1162296 tttcttgataaG-----------------GTATTACATGATGATCATTATGCTCC---------------TTATCATCGACAtctgtcaaaaatcataaaaattt
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      439908 105 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I

a score=468.000000
s ce10.chrX             1451846 213 + 17718866 TCGAAATGTTAATGCCTTTT---------------------------TTTCG----------ACCATTT-----TTGTTATGGGCTCCTG---------TT-------ATCTTATT----------------AATC--AGTTCCTCAGTAACTAC---------AGTAATCCTAGTT----AACTACAAAGTACGAAGTACA----------AACTACAACAT-------TTTCAGAGAACGCCGCCAAGCCTTCCCAGACCTGGCTAAGCAGTATCTCCAGAGCATCAGCTG-------AGCCATCTGGCATTATCATAATTATT
s caeRem4.Crem_Contig24  922927 189 -  1162296 tcgaaata---------------------------------------tgtCA----AGCCGTACCACTTGGTGCCT------------GGTAGAACTCTTT-------ATCTAACA----------------AATG--GAATGTTGC-----------------AGCAaacattgtttcaaaattccaaaatttcaa---------------tatttcaatat-------ttccagaGAACGCCGTCAAGCCTTCCCGGACCTTGCTCGCCAATATTTCCAAAGTATCAGCTAAATGCCAAATCCACT------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      440013 321 +   783054 TCGAAATGCTAACAATTTTCGATGattccataactttttttgacaattatCACGATAAgtatatcattttttgattatcatcGACATCAgcataaatattttgaaacaatctcAAACCGTACCACTTGGTGCAATGTAAAATGTTTCttatcttcgaaaaaatgagcaaaca---ttttgaaacaccaaaaacagaaaaactgagtgaacgttactacaaaacACCTTTATTTCAGAGAGCGCCGTGAAGCTTTCCCGGATCTTGCCAAGCAGTACTTCCAAAGCATCAGTTAACTTGCCAAACAACT--CAACGCCATAATTATT
i caePb3.Scfld02_62     I 105 I 107
e cb4.chrX               633301 78288 + 21540570 I

a score=679.000000
s ce10.chrX             1452059 57 + 17718866 ATCTCAAATCTCTGTAAAATTGTATTATTATA-TGTAGCACAACCCC--------TGGCTAGTCAA
s caeRem4.Crem_Contig24  923116 59 -  1162296 GCCATAAATGT-------ATTGTATTCTGCTATTGTAAAACAAGCCCAACTAGAGTTACTAGTCAA
i caeRem4.Crem_Contig24 C 0 I 2104
e caePb3.Scfld02_62      440334 107 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I

a score=0.000000
s ce10.chrX             1452116 27 + 17718866 GCCCCCCACCGCaatatatttatatat
e caePb3.Scfld02_62      440334 107 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I
e caeRem4.Crem_Contig24  923175 2104 -  1162296 I

a score=-1491.000000
s ce10.chrX             1452143 529 + 17718866  
s caePb3.Scfld02_62      440441 438 +   783054  
i caePb3.Scfld02_62     I 107 C 0
e cb4.chrX               633301 78288 + 21540570 I
e caeRem4.Crem_Contig24  923175 2104 -  1162296 I

a score=-297.000000
s ce10.chrX             1452672 122 + 17718866 TGGGATCAATGAAGGGGGGGGGGGGGGGGGGGTCA----CTGGAATGATGGGGGGAGAATGCCGTGG---AATAAA-TATGAGGATCCTAG-------------GTGTCTAAATTAT---------------TGATTGGTTAATTGATGAAGCTGCAG
s caeRem4.Crem_Contig24  925279 119 -  1162296 TGGGATCA-------AGGGGGTGTGGGGATGTTGA----ctggaatgaaa-----tgaatgcCATTTGGTGATAAA-TATGAGAATCCTAG-------------gtgactaaaaaaa----gaaaaaaaagttttatggAAAATTATCGTCAG-----
i caeRem4.Crem_Contig24 I 2104 I 1
s caePb3.Scfld02_62      440879 135 +   783054 TGGGACC--------AGGGGGCGT-----TATTGAAGATTTGGAATCAAA-ACTGGGAATG---------GATAAATTATGACAATCCTATCTGACTAGTTAGCGTGAcgagaaaaattgggaaacgAAGCATTCATTGTCATTTGTTGTAGTTGGAA
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX               633301 78288 + 21540570 I

a score=-9649.000000
s ce10.chrX             1452794 105 + 17718866 GTTACTTGTTG---------AAGTTCTCGAGGATGTGGCGTTGGGGCATGC---------GTTGCTCTTTCATCGGGCC---TCTGAAATTACAAATCG-TTGAGAAACACT---AAGGGTTTT----------ATTC--TG
s caeRem4.Crem_Contig24  925399 133 -  1162296 GGTGTTTGTTATAGTGCGAAGGTGTTTCCAGTATAAGCCGGCCGTTGGTTTTATGCTCCTTCTGTTCTTTCATCAAGGGcgctctg-----aaaaattg-aagagttaGTTA---TGGAATTTTAGCATTAAAAATTTGTTA
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    83268 105 +   141934 ----------GTAGTTTGCTGAGCGTTCAAGAGGATGTCGGGTGCTGgctc---------ttattttttccacaatcgg---tctgcaa--aaaaatagataaacttcaaat---tgaactttt----------ctttgACA
i caeSp111.Scaffold514  N 0 C 0
s caePb3.Scfld02_62      441014  90 +   783054 --------------------GAGCTTTCGAGTGGATTACGGCCATTCATTC------------TGTCTTTGGTGGtggg---tctg------aaaatat-taaagtTAGGATAAATAAGACCTT----------ATTCAATG
i caePb3.Scfld02_62     C 0 C 0
e cb4.chrX               633301 78288 + 21540570 I

a score=323215.000000
s ce10.chrX             1452899 761 + 17718866  
s caeRem4.Crem_Contig24  925532 758 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    83373 754 +   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      441104 761 +   783054  
i caePb3.Scfld02_62     C 0 I 33
s caeJap4.Scaffold16506    1635 767 +   115485  
i caeJap4.Scaffold16506 N 0 C 0
e cb4.chrX               633301 78288 + 21540570 I

a score=-5867.000000
s ce10.chrX             1453660 34 + 17718866 TCGATGACTAAGAGTGAGCAAGAGCACTTT----ATCC----
s caeRem4.Crem_Contig24  926290 36 -  1162296 --tgaaaatagttttaagtttaaattaattgaaaatga----
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514    84127 35 +   141934 ---AcgattattttcaaaaatgaaagtttcgAACATCC----
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506    2402 36 +   115485 --TGATTCTAGATTTTGGAAGAAATAGATT----CTCCAGAC
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      441865 33 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I

a score=12533.000000
s ce10.chrX             1453694 305 + 17718866 ACTTACTTGTCTTGCGAAGGATCCGGCGGAGGAGGTGGAAGCTCCGTTGTTCGGCATGTCAGTGAACCCACGTA--------CCTCGGAT----------TGCTGGAGTCTTACCAGGTGTGGATGCTTG-----AGGGCCTG------------GTCG----------------------CCCTTTTGGTGGCTGTAGTTCAGCTTGCTATACATTTTCTTTATT-CTGAAA------AAAAT----------ACACTAAAC------TTAAAGA--------------GAAGTTAAAGAGAAA---TAAGAGCA-AACAGTTTGCGAAA----------AGGTTTCGAATGTTCTCGGTG-----------------AGAGGCGATGAGAAATAA---------------AAAGAGAAACAGAGAAAGCAAGGAGGA------AAAATG
s caeRem4.Crem_Contig24  926327 370 -  1162296 acatacTTGTCTGTTAAACATTCCGGCGGCTGAGGTGGAGGCTCCGTGATGTGGGAGATCTGTTAATCCGCGGAGAGGTTCTCCTTGGATTCGGGAGAGTTGGGGGTTTTTCATTGG----GGTTCCGTCAA---AGGTCATTGGTTT-------GTCT-------------------TCTTTAGCTTGGTGATTGTAGGTGAGCTTGCTGAACA--TTGggggtttctg---------aaaatgacaaaagttagatttgaaaattttcgaaacgttAAGTATTATAACGGaacaaaaatggaa---caaaagGA-GGAATTGCGTGGTCG------ATGTGGTTTCGAATGTTCTCGACG-----TCTCGTTT-TTAAGAGAAGACAAGACAGAC---------------AAAACTATAGAGCAGGAGCCATCAAga------tgaata
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514    84162 400 +   141934 ACTCACTTGTCTTGCAAACAT---GGcgttggaagaagaagcccCGTTATTTGGAAGATCGGTAAGACCGCGAAGAGGTTCTCCTTGCAGACGAGACACGTTTTGGTGCTTCATTGGTTGAGGTTGCAGGTAGGtgggttttttctcttccatagATTGCTGTTGTTCCTGTCGGCGTTGTTCTTGTTGTTGATTGTAATTGAGTTTGCTGAACA--TAATGAATAGCTGGaagtttagaaaataaagaagttcgtattaaaaaaccacagaaaca-----------gccggaaaaaagagaaaa----aaaacaataaacgAGTGACGTA---------GTGGTATCGAATGTTCTCGTCG----ACCACATTTCTCatgagaaaacgagaga------------------tgaaaaaaagagcgtGAGCAGTTGAGAAGTGAGAGAACA
i caeSp111.Scaffold514  C 0 I 116
s caePb3.Scfld02_62      441898 379 +   783054 actcacttgtctTGCAAACAT---TGTGTTTGAAGTCGAAGCTCCATTGTTTGGGAGGTCTGTCAATCCACGGAGAGGTTCTCCTTGAAGACGAGAAAAATGCGGGTGTTTC---------GGTAGCATGTAATCAggtttttggtcc-------attg--------------------gtttgttttgttggttgaagttgagtttgctgaacatttttttgattgctgaaagagcaaaaaatgtcTAAGG--Gtatcaaaa------agaatga-----------gaCGAAACGGAAAGTAAaggatgaaacaa-aaatgagtgtGGT-----------TGATTTCGAATGTTCTCGATGCGACGCCACATTT-TTAGGGGAAAACGAGAAAGGCCTGTGAGAGAGCATTTGCAATGAACAGTGTTAG-AGAAGAgaagtgaatgaaaa
i caePb3.Scfld02_62     I 33 I 27
s caeJap4.Scaffold16506    2438 348 +   115485 ACTCACTTGTCTTATAAATCC---AGCTGCAGATGTAGACGCTCCATTATTGGGTAGATCAGTCAGCCCCCGGACCGACATTCCTTGAAGCCGTGTGACTTG-AGGCGCTTT---------GA------------GGGGCTCAACATC-------ATAC-------------------GATTTGTTTTCGCCGCTGTAGCTGAGCTTGCTGAGCATTTTTGAAACT-CTGCAAATA---AAAACGAACAGTTATTGATTTTAc--cgttaaaaaga--------------aaaaaaaaaaaaaaa---gaaaggag-aTGGCTGTTTCGTTtcatttcgtttcgtttcgaatGTTCT-GGCG-----TTGCGCTGAccgaaaggaaaggaaaggaaa---------------agaaataaagaaaaagaa-aacgaaac------agcatg
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               633301 78288 + 21540570 I

a score=369.000000
s ce10.chrX             1453999 4 + 17718866 AGAA
s caeRem4.Crem_Contig24  926697 4 -  1162296 gaga
i caeRem4.Crem_Contig24 C 0 C 0
s caeJap4.Scaffold16506    2786 4 +   115485 agaa
i caeJap4.Scaffold16506 C 0 I 792
e caePb3.Scfld02_62      442277 27 +   783054 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    84562 116 +   141934 I

a score=-51.000000
s ce10.chrX             1454003 14 + 17718866 AAGTGAAATGATGA----
s caeRem4.Crem_Contig24  926701 14 -  1162296 aaaagagagaatga----
i caeRem4.Crem_Contig24 C 0 I 591
s caePb3.Scfld02_62      442304 18 +   783054 AAAAGGGTGGATTGTGGT
i caePb3.Scfld02_62     I 27 C 0
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    84562 116 +   141934 I

a score=-1547.000000
s ce10.chrX             1454017  64 + 17718866 CGTCATTGCC-------------------GCCGAA------------------------TTTAGC--------------AACCAGCTGCATAAGGGTGAGCAAGCGCTATGGGACACACCC
s caePb3.Scfld02_62      442322 118 +   783054 GGGCGCTGCCCCTCAACACACGACCCCATACCGAAAGAGACAATATTGAGTGGTCGAGTTTTAGTTAGAAATGTGATCAAATCAGTAGTA-AAAGGTga--cagaaatttgaattacatCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    84562 116 +   141934 I
e caeRem4.Crem_Contig24  926715 591 -  1162296 I

a score=-7320.000000
s ce10.chrX             1454081 110 + 17718866 AGAAGGTTATCA-----GTA-----GTTATCAAATGGGAGT-----------------------GTGAATAAAATAAA-------CTAAAAAGGTTACATTTCTTACAGA-----TTTTAGAAACGATAACTCAAA--CTTTTAGACTTGCTCCAAC
s caeSp111.Scaffold514    84678  85 +   141934 AGACGGACAAAA-----ATAAC---GCATCTATGGGAGTGA-----------------------ATGAGTTTAAGACA-------TTCCTatgattgaatttttt--------------------aatagtttgaa-------ggga-------aaa
i caeSp111.Scaffold514  I 116 C 0
s caePb3.Scfld02_62      442440 156 +   783054 AAAAAGACTATGTCACTATAACCTAGTTTCTAAAACGGTGATGTCATTGAGATATTTGTGATTCATGATTTGGAGAGAGCTGGAGTGccgaaaattgtattttgtgTGGAGGCCGtgacaataaaaataaactaaaTACTTCTTGGACTGCT-CAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeRem4.Crem_Contig24  926715 591 -  1162296 I

a score=-26173.000000
s ce10.chrX             1454191 162 + 17718866 ----ACTAGAAAATGG--------------------ATAAAAAAT--------AGATATTTAAATTGTCTATAAAGTT-GAAAAATTGTCAGAA------------AGGAAATCGACATCACAAATGACTATGTAACTGCTAATTTAAGAAGAAGGATTAT-----------CA------------ACATAGAAATCGGCTTCTAACACTACAAAATACTCAAACCAGCT------
s caeRem4.Crem_Contig24  927306 151 -  1162296 ----ACTagaaaagggtaagaaaaatattgaaagaaacaagaaat----------aaaatgaaag-------atagataggagaagtataaaaaagatagtttgaaaacaatttga-----------------------------------gaaaaaatat----------tca-------aaactaaaaaaatattggattcTCAGACTATAGTCAAACCAAA------------
i caeRem4.Crem_Contig24 I 591 C 0
s caeSp111.Scaffold514    84763 146 +   141934 attaattttatgaaa------------TCGA-----ATAGCAGGTCCATTGGTGAAAAACTGAAGTCT---TAACTAT------CGTCTTAAAATGCT------TAAAAAAGTGGA----------------GTTCTTATGTGGTAACAGAGAAAGAATGT-----TTCAATTA-------ATAATATAAAA--------------------CGCTGAGCAAAAC----------T
i caeSp111.Scaffold514  C 0 I 28
s caePb3.Scfld02_62      442596 205 +   783054 atgaattcactgaaaatctagaaagttTCGATATTTATAAGGGGT--ATAGGTAGACAATTAAATCTT---Tctagat-gaaaaaattttagactG----------AGCAAATGGACA--------GTTTTggtttctctttcttcacaaGACACGCCTATATTTGTTTAATCAAGATAAgatgatacaaaaaaattg-------aaattttcgaaaagaaaaatgagttgtACAT
i caePb3.Scfld02_62     C 0 I 16
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I

a score=-1769.000000
s ce10.chrX             1454353 34 + 17718866 CGAGGAGCCCTCCACCAGACCCAACCGTCTCCGG----------
s caeRem4.Crem_Contig24  927457 32 -  1162296 -AATGAG---------CTTCTCAACCA--TCCGACACAACAAGG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      442817 33 +   783054 AGATAAGACTGGGAGCCTACCCAACCG--TTCTGC---------
i caePb3.Scfld02_62     I 16 C 0
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    84909 28 +   141934 I

a score=12701.000000
s ce10.chrX             1454387 50 + 17718866 ATTGCGAAATGAC---AAACCCCGACACTTT---------TTTCCACGTCGACTTATAGCCA
s caeRem4.Crem_Contig24  927489 54 -  1162296 ATTGCGAAatgca---aaa--ctgaaaactt---caacCATGTCCACGTCGACTTATAGCTA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    84937 57 +   141934 ATTGCGAAATTCG---CGA--ATGGCACTTTTTCCGACCATGTCAACGTCGACTTATAGCTG
i caeSp111.Scaffold514  I 28 C 0
s caePb3.Scfld02_62      442850 55 +   783054 ATTGCGAAATGCGACTCAA--CTGGAACTTT-----GCCATGTCCACGTCGAGTTATAGcta
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    2790 792 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I

a score=41685.000000
s ce10.chrX             1454437 103 + 17718866 TGGGCGGGGCGAGT-----TGTGTACAATTAGACTCCAAGGAGATGGATGAATAC-CGAC---------------------------GCTAGGAGGCAG-------GGCGCAA-------------------AGTATTGCGAAATCGGCGGCAATGTTGTGT
s caeRem4.Crem_Contig24  927543 149 -  1162296 GGGGCGGGGCCAGT-----TGTGTACAATTAGACTCCAAGGAGATGGATGAATAC-CGACGCTCTCGTCGGGAGGAGACGcgtgagagaaaaaggg-aggCTATGCGAGGCAA-CCAGCCGTCC-----ACAAGTATTGCGAAATAGAGGCCAACGTTGTGT
i caeRem4.Crem_Contig24 C 0 I 41
s caeSp111.Scaffold514    84994 105 +   141934 AAGGCGGGGAGTGT-----TGTGTACAATTAGACTCCAAGGAGATGGATGAATAT-GGAC---------------------------GAGAGCGGG-AG-------GGGGCAA----------------ACAAGTATTGCGAAATAGAGGCCAACATtgtgt
i caeSp111.Scaffold514  C 0 I 61
s caePb3.Scfld02_62      442905 103 +   783054 tgggcggagcctgt-----tGTGTACAATTAGACTCCAAGGAGATGGATGAATAC-CGAC---------------------------GAGAAC--G-AG-------GAGGGAG----------------GCAAGTATTGCGAAATCGAGGGCAATGTGGTGT
i caePb3.Scfld02_62     C 0 I 42
s caeJap4.Scaffold16506    3582 125 +   115485 TGGGTGGAGCTTGTTAGGGTGCGTACAATTAAACTCCTAGGAGATGAATGGACGCAAAAC---------------------------Gaggaaaga-ag-------aaagaaagccAGAGAGAAAAGGGACAAGTATTGCGAAATAGTCGTCAACATTGT--
i caeJap4.Scaffold16506 I 792 C 0
e cb4.chrX               633301 78288 + 21540570 I

a score=0.000000
s ce10.chrX             1454540 23 + 17718866 TGTGAGAAGAGAGGAGGGGACAG
e caePb3.Scfld02_62      443008 42 +   783054 I
e caeJap4.Scaffold16506    3707  0 +   115485 C
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85099 61 +   141934 I
e caeRem4.Crem_Contig24  927692 41 -  1162296 I

a score=3357.000000
s ce10.chrX             1454563 27 + 17718866 GAGACGCAGAGCTTGCGATGAGTCACA
s caeRem4.Crem_Contig24  927733 24 -  1162296 GGAATAAAGA---AGAGATGACTCACA
i caeRem4.Crem_Contig24 I 41 I 5
s caeSp111.Scaffold514    85160 19 +   141934 --GACAC------ATCGATGAGTCACA
i caeSp111.Scaffold514  I 61 I 19
s caePb3.Scfld02_62      443050 27 +   783054 GAGACCCGGGGTGGCCTATGAGTCATA
i caePb3.Scfld02_62     I 42 I 4
s caeJap4.Scaffold16506    3707 24 +   115485 GAGAC---GGGCTTTTGATGACTCATA
i caeJap4.Scaffold16506 C 0 I 10
e cb4.chrX               633301 78288 + 21540570 I

a score=-1082.000000
s ce10.chrX             1454590 8 + 17718866 --ACGCCGCC
s caeRem4.Crem_Contig24  927762 5 -  1162296 -----CCTTC
i caeRem4.Crem_Contig24 I 5 I 3
s caePb3.Scfld02_62      443081 5 +   783054 -----CCTCC
i caePb3.Scfld02_62     I 4 I 12
s caeJap4.Scaffold16506    3741 8 +   115485 ACGCgcct--
i caeJap4.Scaffold16506 I 10 C 0
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85179 19 +   141934 I

a score=-25040.000000
s ce10.chrX             1454598 166 + 17718866 TCTGCGTCTCTTCCCGC----------TGCA---------------CACTAT---------------------GCGGGGC----------------GAGAG----------GAATGGGAGAAGCGCGAG-----TGGTTTTGTTGTTTGCTGG----------GAAAGACGCAGA------GAAACCGAGG--------GAACTGGACTG----------------TGAGTCATACATGTCATGCATACTG----------CAAA----GTCATGAAAAACTGTCGTGGGGGAAAAT
s caeRem4.Crem_Contig24  927770 234 -  1162296 TCTAAGTCTCTCTCCGT----------AGCGTTATGTTTTTTGAGAC-TTTCGTACGATGGATCACTAGAGACAAAGAGG-----TTCCAGAGAATGAGGGCGC-------AAAAATAAAATGCGGGAG------GGCTTTG-TTTTCCTAGGCAGCCTGgg-gggagacgcagaaaaTGGGAAGTAGGGGGTCGACTCAAACCGGACTAGAATGATGGTCG--GGTGACTCATACTTGTCATGAATACCC----------------------TCAAAAACTATCGGAG--------
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514    85198 238 +   141934 TCTGCGTTTCTTGCCGC----------AGTGTAATCCTTTTTGAACTGCTat-----atgga-----------aaagaga--------aaaaggaagagagatctgagaaagaaatgaaaaagtgacag-----aggttttgtttttcaatgtttgaaAACGCAAGACAGAGAGAAATACGAAAATAGTGA--CGaacagaatcaga--agaatcgTGATGACTGATGAGTCATACTTGTCACTAACACTTCTCAACTGCCGAAG----GGAAGATTGAACTGTC------------
i caeSp111.Scaffold514  I 19 C 0
s caePb3.Scfld02_62      443098 230 +   783054 CCTGCGTTTCTTCCCGC----------TGTGTTGTCTATTTGGAATCATTTTACATGacaga-----------aaagagagagttGACAAAACGAAGAGAAGTT-------GAAGGGGAGGAGGGGCAGAATAAAAGCTTTG-TTTTCTTTGGCTGACAGTg-aagagatggaaaa-----gaagtAGGAG--TGAGTCAAACCGGACTGACATGTTGAGAGATGCTGAGTCATACTTGTCATGCTTATTT----------------------GACAGAATTGTCAAtg--------
i caePb3.Scfld02_62     I 12 C 0
s caeJap4.Scaffold16506    3749 221 +   115485 tctcctttttttcccCCCTGCTATCTTTGTTCTATGTTATTCGCCTCACTATGCCTTCCGAA-----------AATAGTG-----TGCGGTGCGAAGAGGAGT--------GTTGTTTGGTGGAGGCAC-----GCGTTTTG-TTGTCGTGTG-----AGGG-AAAAGTTAGAGAA-----AAAATAGTGG---------------------ATATTTACGGTGTCGAAGTGACCGattccatgaa-actggaaaacgaccgATAAACCGTTACGCAGAACAAT-------------
i caeJap4.Scaffold16506 C 0 I 2587
e cb4.chrX               633301 78288 + 21540570 I

a score=-1689.000000
s ce10.chrX             1454764 15 + 17718866 GGAGATTGTAGGAGA----------
s caeRem4.Crem_Contig24  928004 18 -  1162296 -------ATTGAAGATTGATAGGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    85436  7 +   141934 --------TGGAAGA----------
i caeSp111.Scaffold514  C 0 I 690
s caePb3.Scfld02_62      443328  8 +   783054 -------ttgagaga----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    3970 2587 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I

a score=575.000000
s ce10.chrX             1454779 16 + 17718866 GAGAGAGAAAAAAGAA
s caeRem4.Crem_Contig24  928022 16 -  1162296 GATAGTGTGACAGGAA
i caeRem4.Crem_Contig24 C 0 I 2552
s caePb3.Scfld02_62      443336 16 +   783054 aagagagaagttgaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    3970 2587 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85443 690 +   141934 I

a score=877.000000
s ce10.chrX             1454795 19 + 17718866 CAAACT--AAATAGAATTGTT
s caePb3.Scfld02_62      443352 21 +   783054 aaaactaaaaatagaaTAGTT
i caePb3.Scfld02_62     C 0 I 1958
e caeJap4.Scaffold16506    3970 2587 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85443 690 +   141934 I
e caeRem4.Crem_Contig24  928038 2552 -  1162296 I

a score=0.000000
s ce10.chrX             1454814 4163 + 17718866  
e caePb3.Scfld02_62      443373 1958 +   783054 I
e caeJap4.Scaffold16506    3970 2587 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85443  690 +   141934 I
e caeRem4.Crem_Contig24  928038 2552 -  1162296 I

a score=64.000000
s ce10.chrX             1458977 20 + 17718866 TCCCACGTGCGGGGAGACCG
s caePb3.Scfld02_62      445331 14 +   783054 TCTCAAGCGTAGGG------
i caePb3.Scfld02_62     I 1958 C 0
e caeJap4.Scaffold16506    3970 2587 +   115485 I
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85443 690 +   141934 I
e caeRem4.Crem_Contig24  928038 2552 -  1162296 I

a score=91.000000
s ce10.chrX             1458997 1 + 17718866 T
s caeJap4.Scaffold16506    6557 1 +   115485 T
i caeJap4.Scaffold16506 I 2587 C 0
e caePb3.Scfld02_62      445345 0 +   783054 C
e cb4.chrX               633301 78288 + 21540570 I
e caeSp111.Scaffold514    85443 690 +   141934 I
e caeRem4.Crem_Contig24  928038 2552 -  1162296 I

a score=145802.000000
s ce10.chrX              1458998 582 + 17718866  
s cb4.chrX              20834093 559 - 21540570  
i cb4.chrX              n 78288 C 0
s caeRem4.Crem_Contig24   930590 571 -  1162296  
i caeRem4.Crem_Contig24 I 2552 C 0
s caeSp111.Scaffold514     86133 558 +   141934  
i caeSp111.Scaffold514  I 690 C 0
s caePb3.Scfld02_62       445345 570 +   783054  
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506     6558 572 +   115485  
i caeJap4.Scaffold16506 C 0 I 15

a score=-2148.000000
s ce10.chrX              1459580 10 + 17718866 ACGCAACTTT
s cb4.chrX              20834652 10 - 21540570 AAGTGATTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   931161 10 -  1162296 GAGTGTTTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     86691  8 +   141934 TTGTGTTT--
i caeSp111.Scaffold514  C 0 I 171
s caePb3.Scfld02_62       445915  8 +   783054 atgatttt--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I

a score=-8258.000000
s ce10.chrX              1459590 35 + 17718866 TTTAGTTGAAAAAAAAACACATTTCTCAACAATAT-------------
s cb4.chrX              20834662 24 - 21540570 -----TT----AAGATATATACTT--------TATCAGAAT-------
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig24   931171 14 -  1162296 -----C-------------CGTTT--------TACCAGCT--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       445923 23 +   783054 ----------------ttccattc--------tatCAGAA-AATCTAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-3513.000000
s ce10.chrX              1459625 52 + 17718866 GACGTCATTTTGGGACCTAGGTTGTGTTCAAAATAAACATGGTGCATCGAAC
s caeRem4.Crem_Contig24   931185 40 -  1162296 AAAATCCATGTAAAACTTCAATTGGGTTTATTGTATacat------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       445946 18 +   783054 -GAATGC---TCAAATCCCAAA------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834686 33 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-469.000000
s ce10.chrX              1459677 26 + 17718866 ATCGACACTTTTCCAATTGTAAACTA
s cb4.chrX              20834719 24 - 21540570 CTGgatgttttttc--ttaaaaatta
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig24   931225 14 -  1162296 ----------cagt--ttcaaaactg
i caeRem4.Crem_Contig24 C 0 I 74
s caePb3.Scfld02_62       445964 24 +   783054 ATCAAAgctatttt--ttgtcaattt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-1759.000000
s ce10.chrX              1459703  70 + 17718866 CCCGTTCAA---AGTTCAAAATTCTCCACAGTTCCGGATTCAAATGACGTCAT-------------------TTTGTA--------------------TAGTTTTACGATAA
s cb4.chrX              20834743  81 - 21540570 --tttccaaCACTGGTCACAAATCAAT----------ACATGATTGACGTCAT-------------------TTTGACTGTATAAAAGATTATTTTATTAAAACTATGGTGA
i cb4.chrX              C 0 I 13
s caePb3.Scfld02_62       445988 100 +   783054 tttattcaa-----atcggAATTCACTTTTGCTCC--AATCGAATGACATCATGAACTTTTTCCTAATGACGTTTGAC-----AAATGACAATGGAGTCAGTTCCGTGATAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130  15 +   115485 I
e caeSp111.Scaffold514     86699 171 +   141934 I
e caeRem4.Crem_Contig24   931239  74 -  1162296 I

a score=6411.000000
s ce10.chrX              1459773 53 + 17718866 AAT-----------GTTTATGATGATAATTATGatcatcatcatcatc---------atcatAATTATTTCCA------------
s cb4.chrX              20834837 41 - 21540570 --------------aacaattattatcatcataatcatcatcatcatc------------------atcgtca------------
i cb4.chrX              I 13 I 875
s caeRem4.Crem_Contig24   931313 71 -  1162296 --------------gatgattatgatgattatgatcatcgtcatcatcaatACCATACTTATGAATATCAtcattggaatttttt
i caeRem4.Crem_Contig24 I 74 I 7
s caePb3.Scfld02_62       446088 61 +   783054 AACTGTTTGTTAGTActgatgttgatgatgatgatcatcatcatcatc------------gtaatcatcatca------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-1633.000000
s ce10.chrX              1459826 70 + 17718866 ---------CAAACTGGCACGAAACTATGGAATTTTAAATCGGGTTCCATGTAAAGTTAATTCTTATCAGTTGGCATCA
s caeRem4.Crem_Contig24   931391 63 -  1162296 ------CTTCTTATCG------CACtacgaaaattaaaatttgatgca----cacattttttgttatcagttgGAGCTA
i caeRem4.Crem_Contig24 I 7 C 0
s caePb3.Scfld02_62       446149 59 +   783054 tAGGAATTTCTAGT-------------CAAAAATGTAAATCGTGCACA----AAAACTTCTTATCAGCAGTTACCG---
i caePb3.Scfld02_62     C 0 I 38
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-865.000000
s ce10.chrX              1459896 46 + 17718866 AACATTTTTCCAAGACAAACATGTATACGGAATTTGATAATGATGA
s caeRem4.Crem_Contig24   931454 24 -  1162296 GAAGTGT------gacaaacaactttttgg----------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       446208 38 +   783054 I
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-6316.000000
s ce10.chrX              1459942 181 + 17718866 TAGTGAATTGAAAGTGATGTT-----GATGATGGTTTTGGGGTGGAATTTCTGTGACAACTGGGGTGAAGTAATGAGGAAAATTGTTAGTAGGGaaaattggtgtttcaaaatttccagccaacgttttggcaaattgacaattttttttggaaaaatttgaattttgaaggaaatcaagagcaat
s caeRem4.Crem_Contig24   931478 101 -  1162296 -------ttgTTAATGATGTA-----Gatgatgattt-----tgaaacattgacaTCAACTAGGG----GTGAC--------------------------------------------------------ATGAATTTGAAAGCTgtaagaaaagaaatagag---ggaaggaag----aaacaa-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       446246  90 +   783054 -----------TACTGACAGaaaaacgatgatgat----------gacgataatatcaa-----------------------------------------------------------------------actgattgaaaatttatgaacaaaaaatgggaa---aagagggaatt-tgagcaat
i caePb3.Scfld02_62     I 38 C 0
e caeJap4.Scaffold16506     7130  15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=-625.000000
s ce10.chrX              1460123 40 + 17718866 gtcgcaATCCTAGAGTAAATTTAAAACTTCCAAACATTTT
s caeRem4.Crem_Contig24   931579 15 -  1162296 ---------caaaaataa---taaaac-------------
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       446336  0 +   783054 C
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I

a score=0.000000
s ce10.chrX              1460163 68 + 17718866 TTTCGTACAGTTTTACATTGATATTTAGCTGCTTTGGCACCATCTGGCGCTACTTCATTTTTAATCGA
e caePb3.Scfld02_62       446336  0 +   783054 C
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I
e caeSp111.Scaffold514     86699 171 +   141934 I
e caeRem4.Crem_Contig24   931594  0 -  1162296 C

a score=-5326.000000
s ce10.chrX              1460231 22 + 17718866 ----------------------------------------------AAAAAATTGGTCTAAACCATTT
s caeRem4.Crem_Contig24   931594  9 -  1162296 -----------------------------------------------aatcATTGA------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     86870 61 +   141934 caaaaatgatgttaATAGTGTGTTATAGCTCTTAATCGGAATgatacaaaaattaattaaa-------
i caeSp111.Scaffold514  I 171 C 0
s caePb3.Scfld02_62       446336 10 +   783054 ----------------------------------------------aaaaaattga------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7130 15 +   115485 I
e cb4.chrX              20834878 875 - 21540570 I

a score=-9545.000000
s ce10.chrX              1460253 26 + 17718866 CAAAATGCTCCAAAA---TCAAGATTTCC----
s caeRem4.Crem_Contig24   931603  3 -  1162296 -----------------------ATT-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     86931 13 +   141934 --------tacGAAA-----CTTACT-------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       446346  9 +   783054 ------------aaa-----aaggtt-------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506     7145 20 +   115485 ----------CAAAACATTCCAAATT---GTTG
i caeJap4.Scaffold16506 I 15 C 0
e cb4.chrX              20834878 875 - 21540570 I

a score=140819.000000
s ce10.chrX              1460279 213 + 17718866 TTCAGAAAATGTGTGAAGCCCACAACGTGGACACCCCACTCTACCTCATGAACTCATTTTACACTGATGAAGACACCAAAAAGTATTTAGCGGAAAAAGGTTACTCGAATGTAAAGACGTTTGTGCAGTCGAAATGTCCAAGGCTCGATGCTGAAACCAAGTTGCCGATTGAAGATGAAAATGAAGATTGGGGAGATGATGCGTGAGTTTTTA
s cb4.chrX              20835753 207 - 21540570 TCCAGAAAATGTGTCAGTTGTATGGAGTCGACGTTCCACTCTACCTCATGAACTCGTTTTACACCGACGATGATACCAAATCATACCTGTCGTTGAAAGGATATGACAAAGTGAGAACATTTGTACAATCCAAATGTCCTAGACTTGATGCTCAGACTAAATTACCAGTTGATGATGAAA------GCTGGGGAGATGACGCGTAAGattgtt
i cb4.chrX              I 875 C 0
s caeRem4.Crem_Contig24   931606 213 -  1162296 TGCAGAGAATGTGCGAAACCTTTGGTGTAGATACTCCACTGTACCTCATGAACTCATTCTACACTGACGATGACACTAAAGCGTATCTCGCCGAAAAAGGATACAACAAAGTTAAGACGTTTGTTCAGTCCAAATGCCCAAGACTTGACGCTGCCACCAATCTGCCAATAGAAGATGACACACAGCAATGGGGAGATGATGCGTAAGATATTC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     86944 211 +   141934 CTCAGAAAATGTGCAAAACTTACAACGTGGATATACCTTTTTATCTTATGAACTCGTTCTACACGGACAATGACACTAAAACATAtctcaatgaaaaaggaTATGAAAAAGTTAGAACCTTCGAACAATCCAAATGTCCACGATTGGATGCAGAAACAAAACTACCAGTAGCAGCAGTTACACAAAACTGGGGAGATGATGCGtgagattt--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       446355 213 +   783054 tttagaaaatgtgcGAAACGTTCGGTGTGGATACTCCTCTCTACCTGATGAACTCCTTTTACACGGATGATGACACCAAAGAGTATCTTGCGAAAAAAGGATATAACAAAGTGCAAACGTTTGTGCAATCCAGATGTCCAAGATTAGATGCTGAGACCCAGTTGCCAGTGGAAGATGTTGACCAAAGTTGGGGAGATGATGCGtaagattatt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506     7165 207 +   115485 TTTAGAAAATGTGTAACACGTTCGGTGTAAAAACTCCATTATACTTGATGAATTCATTCTACACCGATGAAGATACCAAAGAGCATATTTCCAAGAAACAGTACACCAATGTGCGCACATTTTTGCAATCGAAATGTCCCCGGCTAGATGCTGAAACCAAACTTCCCATTGAAGATGACG------AATGGAAAGAAGATGCGTATGTTTTTA
i caeJap4.Scaffold16506 C 0 I 28

a score=-198.000000
s ce10.chrX              1460492 2 + 17718866 CG
s cb4.chrX              20835960 2 - 21540570 tg
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig24   931819 2 -  1162296 CT
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62       446568 2 +   783054 tt
i caePb3.Scfld02_62     C 0 I 45
e caeJap4.Scaffold16506     7372 28 +   115485 I
e caeSp111.Scaffold514     87155 0 +   141934 C

a score=0.000000
s ce10.chrX              1460494 1 + 17718866 T
e caePb3.Scfld02_62       446570 45 +   783054 I
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I
e caeSp111.Scaffold514     87155 0 +   141934 C
e caeRem4.Crem_Contig24   931821 1 -  1162296 I

a score=-5133.000000
s ce10.chrX              1460495 67 + 17718866 ACTGGGTATTGGGGACAAAGTAGGTAATAGGTAAGGTAGGTAGGTAGGCGTGCGGCAAATTTACCAT
s caeRem4.Crem_Contig24   931822 37 -  1162296 ----ATTCTTGCAGGAAAAG------ATGGATGGGGCAGTTGAGCCT--------------------
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514     87155  9 +   141934 ---attttttgt-------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       446570 45 +   783054 I
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I

a score=-9831.000000
s ce10.chrX              1460562 68 + 17718866 ------GCTGAGCAAAATTGGAAAACAAATGTTTTCCGCGCAAAAGTAGT---AGTAGTAAGGACTAATTA----------TGTAGT
s caeRem4.Crem_Contig24   931859 64 -  1162296 CCTCAGACT--CCAAAAATTGAGGGGAAATA-------------TGTAGTgtagatattttgaa--aactagttACATaat------
i caeRem4.Crem_Contig24 C 0 I 307
s caeSp111.Scaffold514     87164 47 +   141934 -----------atgaa-------TAAAAATGCCTTGC-CATCAACCAAAT---AATATTATGAA--AGGTT----------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       446615 45 +   783054 ------gct--gtgaaaatttttaaaaaatg-------------ggaaGT---GATAGCACTGA--AGTTG----------------
i caePb3.Scfld02_62     I 45 C 0
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I

a score=-225.000000
s ce10.chrX              1460630  9 + 17718866 TAACTAGGA-
s caeSp111.Scaffold514     87211  9 +   141934 TAGCTGAGA-
i caeSp111.Scaffold514  C 0 I 35
s caePb3.Scfld02_62       446660 10 +   783054 TAAATTGGTA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I
e caeRem4.Crem_Contig24   931923 307 -  1162296 I

a score=0.000000
s ce10.chrX              1460639 103 + 17718866 CTACTAGGTACTAGATACCAGGTACAAGGAAACTTAGATATTACGGCACTAAGCTACTAGCGTATCATGGGACTATGGTGCAAAGATCTGCACGGCCGTCATT
e caePb3.Scfld02_62       446670   0 +   783054 C
e caeJap4.Scaffold16506     7372  28 +   115485 I
e cb4.chrX              20835962  26 - 21540570 I
e caeSp111.Scaffold514     87220  35 +   141934 I
e caeRem4.Crem_Contig24   931923 307 -  1162296 I

a score=291.000000
s ce10.chrX              1460742 3 + 17718866 CAC
s caePb3.Scfld02_62       446670 3 +   783054 CAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I
e caeSp111.Scaffold514     87220 35 +   141934 I
e caeRem4.Crem_Contig24   931923 307 -  1162296 I

a score=-9523.000000
s ce10.chrX              1460745 161 + 17718866 ATTCTACAAACTTTTGGCAGGACTATGTATGACTACTCCCCTGACAAGCGCTTGATCACTTTTTCCTTAACTTTACGAGCAACTTCTTTTAGAAATCAAAATCAAAGGCTGATTCAAAATCTAAAAACTAAGGTAACTAGGGTACTGAAGTACTAAGAACA
s caeSp111.Scaffold514     87255  46 +   141934 ATTTTACATACTGATCTTCA------------------------------------CATCTTTTCGTTGCCTT----------------------------------------------------------Ggtaa---------------------aata
i caeSp111.Scaffold514  I 35 C 0
s caePb3.Scfld02_62       446673  27 +   783054 -------ATTCCGATAGAAA------------------------------------TCCATTGTTGTTGA-------------------------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7372  28 +   115485 I
e cb4.chrX              20835962  26 - 21540570 I
e caeRem4.Crem_Contig24   931923 307 -  1162296 I

a score=304.000000
s ce10.chrX              1460906 2 + 17718866 TT
s caeRem4.Crem_Contig24   932230 2 -  1162296 TT
i caeRem4.Crem_Contig24 I 307 C 0
s caeSp111.Scaffold514     87301 1 +   141934 -t
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       446700 0 +   783054 C
e caeJap4.Scaffold16506     7372 28 +   115485 I
e cb4.chrX              20835962 26 - 21540570 I

a score=546.000000
s ce10.chrX              1460908 1 + 17718866 T
s caeRem4.Crem_Contig24   932232 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     87302 1 +   141934 t
i caeSp111.Scaffold514  C 0 I 1
s caeJap4.Scaffold16506     7400 1 +   115485 T
i caeJap4.Scaffold16506 I 28 C 0
e caePb3.Scfld02_62       446700 0 +   783054 C
e cb4.chrX              20835962 26 - 21540570 I

a score=259282.000000
s ce10.chrX              1460909 329 + 17718866 TTTCCAGATGGTGCCCACCGGGACACGGAAACATCTTCCAATCCCTCCAAAACAGCGGAGTCCTCGATCAACTTTTGGCTGATGGCCGGGAAATCATTTTTGTATCGAATATTGATAATACTGGAGCAAACACTGATCTACAAATTGTGCAGCTTATGCTGGACAAGAATGTGGACTATATTATGGAATGCACGCCAAAAACTCAAGTTGACGTCAAGGGAGGCACTCTGATTGATATTGGAGGCCGTATGATGCATCTCGAGATGCCACAGGTACCGGCGGAAAACTTGCCGGATTTCTGCTCTACTAAAGTTTTTAAGTGAGCTTCT
s cb4.chrX              20835988 329 - 21540570 TTTTCAGTTGGTGTCCTCCAGGACACGGAAATATATTCCAGTCTCTTCAAAATACAGGCGTTCTTGATCAACTTCTCTCTCAAGGGCGTGAAATCATTTTCGTTTCGAACATCGACAATACCGGAGCAAAtgcagattttcaaattgtgaaACTTATGCTGGATAACCACGTTGACTACGTCATGGAATGTACTCCAAAAACTCATGTCGACGTCAAAGGTGGAACTCTGATTGAAATAAACAACCAAATGATGCACCTAGAGATGCCGCAAGTTCCACCAGAACACTTGCCGGATTTCTGCTCCACTAAAACTTTCAAGTGAGCTTCT
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24   932233 329 -  1162296 TTCCCAGATGGTGCCCACCAGGACATGGAAATATTTTCCAATCTCTTCAAAACACCGGCGTCCTTGACCAACTCATCTCTGAGGGACgtgaaatcatttttgtctCTAACATCGACAACACCGGAGCCAACACAAGCTTCCAAATTGTTCAACTCATGATTGACCAAAATGTAGACTACGTTATGGAGTGCACACAAAAAACTCATGTTGATGTCAAAGGGGGCACACTCATTGAAATAAACAACCAGATGATGCACTTGGAAATGCCACAAGTTCCACCAGAGAATCTTCCAGACTTTTGTTCAACTAAGGTTTTCAAGTGAGTCagg
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     87304 328 +   141934 ttttcagttggtATCCACCGGGGCATGGAAACATCTTTgaatctctcaaaaactcaGGAGTTCTCGATGAGCTTCTCTCGGACGGACGGGAACTCATTTTTGTGTCTAATATTGATAACACGGGAGCAGATGTCAGTTTCCAAATTACTCAACTGATGCTTGAtgaaaatgttgattttGTTATGGAATGCacccaaaaaactgaaactgatGTTAAGGGAGGTACTCTCATTGATATCAATGATCAAATGATGCATCTCGAAATGCCACAGGTCCCACCAGAAAACTTATCGGATTTTTGCTCAACCAAAGTTTTTAAGttagttgt-
i caeSp111.Scaffold514  I 1 C 0
s caePb3.Scfld02_62       446700 328 +   783054 -TTTCAGATGGTGCCCACCAGGACATGGGAACATCTTCCAATCTCTTCAAAACTCTGGAGTTCTTGACCAACTTCTTGCTGATGGTcgtgaaataatttttgtatcCAACATTGACAACACTGGTGCAAACACAAGTGCCCAAATCGTCCAACTTATGCTTGACCAGAACGTAGATTATGTCATGGAGTGTACCCAAAAAACTCATGTTGATGTTAAAGGAGGTACTTTGATTGACATCAATAACCAAATGATGCACTTGGAAATGCCACAAGTCCCTCCAGAGCATTTACCCGATTTTTGTTCcaccaaagttttcaagtgGGTTTTA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506     7401 329 +   115485 TCTTCAGGTGGTGCCCACCGGGACATGGAAATATTTTCCAGTCTCTAGAAAACAGCGGACTTCTCGATGAGCTGATATCAGAGGGTCGTGAAATTGTATTTGTTTCTAATATCGATAATACAGGAGCTCTTGTTTCTCTCCCGATTGCTCAGATGATGCTTGAGAAACGTGTGGATTACGTGATGGAGTGCACGGATAAGACAAAAGTTGATATCAAGGGTGGAACATTGATTGAAATTAATAACCAAATGATGCACTTGGAAATGCCGCAAGTTCCGATAGAACATCTCAAAGATTTCTGCTCTACTGAAGTTTtcaagtttgttttt
i caeJap4.Scaffold16506 C 0 I 2645

a score=-6007.000000
s ce10.chrX              1461238 20 + 17718866 CAAAATGATATACAAATCAT
s cb4.chrX              20836317 12 - 21540570 CAACCA--------TATAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   932562 19 -  1162296 aaacaata-atttttataat
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     87632  1 +   141934 -------------------t
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       447028 17 +   783054 GTACCA---gtttatttcat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506     7730 2645 +   115485 I

a score=129071.000000
s ce10.chrX              1461258 188 + 17718866 ATT--------------T----TGACGTTTTCAGAATTTTCAATACCAATAACATTTATGTGAACCTAAAAGCTGTGAAAAAGTTGTTGCCAGACATCAAGAGCGAGATTATTGTGAACAAAAAGACTATTAGAAGCCGGGAAGTTCTTCAACTCGAGTTTTCAATTGGAGGGTGTATCAAGAATTTTGATAACGCTTTGTGTGAG-------
s cb4.chrX              20836329 197 - 21540570 TTT---------AATTACAATACGacttttccagaatattcaaCACAAATAACATTTGGGTCAATTTGAAGGctgtcaaaaatcgattgccagatatcaaaagtgaaattattgtcaacaagaaaaaagtcagAGGACGAGAAGTGCTCCAATTAGAGTTTTCTATTGGAGGgtgtatcaaaaattttgcaaatgcTCTTTGTAAG-------
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig24   932581 191 -  1162296 ttt-----------ttat----ccatttttccagaattttcaacaCTAACAACATCTGGGTCAATCTTAATGCTGTTAAGAAACTTCTTCCTGACATCAAAAGTGAAATCATcgttaacaaaaaaaacgtccGTGGGCGTGAAGTCCTCCAATTGGAGTTTTCGATCGGAGGATGCATCAAAAACTTTCCTAATGCACTGTGTTAG-------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     87633 202 +   141934 tttgaaaaaaaaaattgt----tgaaattttcagaattttcaatacaAATAATATTTGGGTCAATTTGAACGCAATTAACAACCGATTGCCAAATATAAGGAGTGAAATAattgtcaacaaaaaaaatgttagaGGACGTGAAGTTCTTCAATTGGAGTTTTCTATTGGAGGTTGTATTAAAAACTTTCATAAAGCTTTGTGTAAG-------
i caeSp111.Scaffold514  C 0 I 14
s caePb3.Scfld02_62       447045 194 +   783054 tttgcagCTGAA------------AAGCTTACAGAATCTTTAACACCAACAATATTTGGGTTAATCTAAACGCTGTGAAGAAGCTTTTACCGGATATCAAGAGTGAAATTATtgtgaacaagaagaaagtcAGAGGGAGGGATGTTCTGCAGTTGGAGTTTTCTATTGGAGGAtgtatcaaaaacttttcgaatgcTCTGTGTAAG-------
i caePb3.Scfld02_62     C 0 I 8
s caeJap4.Scaffold16506    10375 192 +   115485 ---------------------attttaatttaagGATCTTTAACACAAACAACATTTGGTTCAACTTAAATGCTGTAAAGCGCCTGCTCCCAAACATACGAAGCGAGATTATCGTAAACAAGAAGAATGTTAGAGGGCGTGATGTTCTTCAACTCGAATTTTCCATTGGTGGTTGCATTAAAAACTTTCCAAATGCATTGTGTATGAGAGAAG
i caeJap4.Scaffold16506 I 2645 C 0

a score=35.000000
s ce10.chrX              1461446 14 + 17718866 TTTAATTTGA-AAAT------
s cb4.chrX              20836533 14 - 21540570 CTTCATTTAA-AAGT------
i cb4.chrX              I 7 I 3
s caeRem4.Crem_Contig24   932772 14 -  1162296 -TTCTTTTGATAAGT------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       447247 14 +   783054 ttttgattga-aatt------
i caePb3.Scfld02_62     I 8 C 0
s caeJap4.Scaffold16506    10567 15 +   115485 -----TTTAA-AATCGAtaca
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     87835 14 +   141934 I

a score=485.000000
s ce10.chrX              1461460 2 + 17718866 TT
s caeRem4.Crem_Contig24   932786 2 -  1162296 TT
i caeRem4.Crem_Contig24 C 0 I 367
s caePb3.Scfld02_62       447261 1 +   783054 -t
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    10582 2 +   115485 ct
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20836547 3 - 21540570 I
e caeSp111.Scaffold514     87835 14 +   141934 I

a score=-468.000000
s ce10.chrX              1461462 9 + 17718866 GAAAAATTT-
s caePb3.Scfld02_62       447262 3 +   783054 ------ttt-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    10584 9 +   115485 -gaaaatttg
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20836547 3 - 21540570 I
e caeSp111.Scaffold514     87835 14 +   141934 I
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=529.000000
s ce10.chrX              1461471 37 + 17718866 CAAAATTTCAAAAGTTAAAATTCTGTGGAAAAACATG
s caePb3.Scfld02_62       447265 34 +   783054 tacaagttC---GGTCAAAATCTATTTATAAAATATG
i caePb3.Scfld02_62     C 0 I 68
e caeJap4.Scaffold16506    10593  0 +   115485 C
e cb4.chrX              20836547  3 - 21540570 I
e caeSp111.Scaffold514     87835 14 +   141934 I
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=0.000000
s ce10.chrX              1461508 781 + 17718866  
e caePb3.Scfld02_62       447299  68 +   783054 I
e caeJap4.Scaffold16506    10593   0 +   115485 C
e cb4.chrX              20836547   3 - 21540570 I
e caeSp111.Scaffold514     87835  14 +   141934 I
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=658.000000
s ce10.chrX              1462289 13 + 17718866 TGTGTAAAAATTC
s cb4.chrX              20836550 13 - 21540570 TGTCCAAAAAgtc
i cb4.chrX              I 3 C 0
e caePb3.Scfld02_62       447299 68 +   783054 I
e caeJap4.Scaffold16506    10593  0 +   115485 C
e caeSp111.Scaffold514     87835 14 +   141934 I
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=-1500.000000
s ce10.chrX              1462302 4 + 17718866 CGAA-
s cb4.chrX              20836563 2 - 21540570 --ca-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     87849 4 +   141934 -CTAA
i caeSp111.Scaffold514  I 14 C 0
e caePb3.Scfld02_62       447299 68 +   783054 I
e caeJap4.Scaffold16506    10593 0 +   115485 C
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=38.000000
s ce10.chrX              1462306 3 + 17718866 TCC
s caeSp111.Scaffold514     87853 3 +   141934 CCT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       447299 68 +   783054 I
e caeJap4.Scaffold16506    10593 0 +   115485 C
e cb4.chrX              20836565 0 - 21540570 C
e caeRem4.Crem_Contig24   932788 367 -  1162296 I

a score=2681.000000
s ce10.chrX              1462309 5 + 17718866 CATTT
s cb4.chrX              20836565 3 - 21540570 --ttt
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig24   933155 3 -  1162296 --TTT
i caeRem4.Crem_Contig24 I 367 I 5
s caeSp111.Scaffold514     87856 5 +   141934 TATTT
i caeSp111.Scaffold514  C 0 I 5
s caeJap4.Scaffold16506    10593 5 +   115485 cattt
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       447299 68 +   783054 I

a score=43241.000000
s ce10.chrX              1462314 652 + 17718866  
s cb4.chrX              20836572 597 - 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig24   933163 569 -  1162296  
i caeRem4.Crem_Contig24 I 5 I 61
s caeSp111.Scaffold514     87866 502 +   141934  
i caeSp111.Scaffold514  I 5 C 0
s caePb3.Scfld02_62       447367 529 +   783054  
i caePb3.Scfld02_62     I 68 C 0
s caeJap4.Scaffold16506    10598 767 +   115485  
i caeJap4.Scaffold16506 C 0 C 0

a score=-21590.000000
s ce10.chrX              1462966  65 + 17718866 TTGCGTTCATTAAGTTCATTCATATAAACATTAA----------------------------------GTATTGATATATGGCTCCGCCTA---------TTTCTTGG
s cb4.chrX              20837169   9 - 21540570 ----------------------------------------------------------------------------ATAAATTTC-----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     88368  17 +   141934 -------------------TCATATT-------------------------------------------------TAGAGAgcaa-----------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       447896  22 +   783054 -------------------TCAGACG--------------------------------------------ATCGAAATAAAGCCA-----------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    11365 108 +   115485 TCGTCACCTCTAATATATCTTGGATAGATATTAATTACTTTTTagcacacggcgtgctgcccggaacgttattggcaacgcgctccgctgagtgtctgcgtctctcgg
i caeJap4.Scaffold16506 C 0 I 109
e caeRem4.Crem_Contig24   933732  61 -  1162296 I

a score=-4549.000000
s ce10.chrX              1463031 48 + 17718866 CAATTTTCCCTTTTTATATATTTACTTACAAATGATAGAC---CACCATCa----
s cb4.chrX              20837178 23 - 21540570 ---------------------------ATGAATGTGGAAT---TA--TATAAATG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     88385 22 +   141934 ---------------------------acaaatgaaaaattcgga--aaca----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       447918 19 +   783054 ---------------------------AGGAGAGAGAAGT---GA--AGCA----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11473 109 +   115485 I
e caeRem4.Crem_Contig24   933732 61 -  1162296 I

a score=-4074.000000
s ce10.chrX              1463079 23 + 17718866 aaaaatataatga---------attttgaaaa
s cb4.chrX              20837201 20 - 21540570 ---AATA-AATAATGGAA----ATTTAC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   933793 25 -  1162296 aaaagtacagtaatccaac---ATTTAT----
i caeRem4.Crem_Contig24 I 61 C 0
s caeSp111.Scaffold514     88407 23 +   141934 --aaaaatattaa---aatgcTGTTTAC----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       447937 30 +   783054 --AAAAAGAGTAACTGAACAGAATTTACCAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11473 109 +   115485 I

a score=86866.000000
s ce10.chrX              1463102 104 + 17718866 aaaaaaattaaaGTCGAATATCATAATGTGGAGGAATGCGAGCAACCAGTTGATAGTCGAAATACAGCGCACCATTAACCATTGTCACCGTACGACCCTCGGCC
s cb4.chrX              20837221  93 - 21540570 -----------AGTCGAATATCATAATGTGGAGGAATGCGAGCAACCAATTGGTAATCAAAGTATAGTGCGCCGTTGACCATAGTAACAGTACGTCCTTCGGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   933818  93 -  1162296 -----------AGCCGAATGTCGTAGTGTGGAGGAATACGGGCAACCAGTTGGTAGTCAAAGTACAACGCACCATTGACCATAGTGACAGTGCGTCCTTCcgcc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     88430  93 +   141934 -----------AATCGGATATCAAAATGTGGTGGAATACGAGCGACAAGTTGATAATCAAAATAAAGAGCTCCATTTACCATTGTGACTGTGCGACCTTCAgcc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       447967 104 +   783054 GAGAAAATTATAGTCGAATATCGAAATGAGGTGGAATACGGGCAACAAGCTGATAATCGAAGTATAGAGCCCCATTGACCATAGTGACTGTGCGGCCTTCagcc
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    11582 104 +   115485 aaaataatTATAATCGGATATCATAATGCGGAGGGATTCGGGCTACCATTTGATAATCAAAGTACAGAGCTCCGTTAACCATTGTCACTGTGCGTCCTTCAGCC
i caeJap4.Scaffold16506 I 109 C 0

a score=1910.000000
s ce10.chrX              1463206 2 + 17718866 TG
s cb4.chrX              20837314 2 - 21540570 TG
i cb4.chrX              C 0 I 239
s caeRem4.Crem_Contig24   933911 2 -  1162296 tg
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       448071 2 +   783054 tg
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold16506    11686 2 +   115485 TG
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     88523 0 +   141934 C

a score=1272.000000
s ce10.chrX              1463208 3 + 17718866 GAA
s caeRem4.Crem_Contig24   933913 3 -  1162296 aaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       448074 3 +   783054 aaa
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold16506    11688 3 +   115485 AAA
i caeJap4.Scaffold16506 C 0 I 606
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523 0 +   141934 C

a score=-1334.000000
s ce10.chrX              1463211  8 + 17718866 ATTTGTAT------------
s caeRem4.Crem_Contig24   933916  8 -  1162296 atgaatat------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       448077 20 +   783054 atagaagttgaccaaaaatt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523  0 +   141934 C

a score=766.000000
s ce10.chrX              1463219 11 + 17718866 TTCAAACATTT
s caePb3.Scfld02_62       448097 11 +   783054 cttaaacattt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523  0 +   141934 C
e caeRem4.Crem_Contig24   933924  0 -  1162296 C

a score=0.000000
s ce10.chrX              1463230 981 + 17718866  
e caePb3.Scfld02_62       448108   0 +   783054 C
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523   0 +   141934 C
e caeRem4.Crem_Contig24   933924   0 -  1162296 C

a score=871.000000
s ce10.chrX              1464211 66 + 17718866 taTTTTAAAATCTACTCCAACTA------TTACA---AACTGTAATATTTTCAAAAATAAGCCAAAACACGTCCC
s caeRem4.Crem_Contig24   933924 75 -  1162296 tgttTTAAAGTCTACGGTGACCAAAAAGTTTACAGTCAAAAGAAagatttcagtgaaaaaaaaaacaaacaaccC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       448108  0 +   783054 C
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523  0 +   141934 C

a score=29.000000
s ce10.chrX              1464277 1 + 17718866 T
s caeRem4.Crem_Contig24   933999 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       448108 1 +   783054 t
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I
e caeSp111.Scaffold514     88523 0 +   141934 C

a score=-4149.000000
s ce10.chrX              1464278 32 + 17718866 TGAAAATCTGATGACAAAAAAAAATCCCAG--------------CC---
s caeRem4.Crem_Contig24   934000 10 -  1162296 TAAAA-------------------TTTCT--------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     88523 49 +   141934 taaaaatttgaagcaAAGAGAATGTTTCAGAACTCCAGTTGAAATCATT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       448109 35 +   783054 tgacaatcaaattcaaaaagcacaTTTCTG--------------CTAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11691 606 +   115485 I
e cb4.chrX              20837316 239 - 21540570 I

a score=205.000000
s ce10.chrX              1464310 1 + 17718866 C
s cb4.chrX              20837555 1 - 21540570 c
i cb4.chrX              I 239 C 0
s caeRem4.Crem_Contig24   934010 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     88572 1 +   141934 T
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       448144 1 +   783054 T
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    11691 606 +   115485 I

a score=76062.000000
s ce10.chrX              1464311 451 + 17718866  
s cb4.chrX              20837556 477 - 21540570  
i cb4.chrX              C 0 I 154
s caeRem4.Crem_Contig24   934011 536 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     88573 431 +   141934  
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62       448145 748 +   783054  
i caePb3.Scfld02_62     C 0 I 4
s caeJap4.Scaffold16506    12297 616 +   115485  
i caeJap4.Scaffold16506 I 606 C 0

a score=412.000000
s ce10.chrX              1464762 15 + 17718866 TAAGTTTCCGGGGGA
s caeRem4.Crem_Contig24   934547 14 -  1162296 TGTTTG-CCGGGTGA
i caeRem4.Crem_Contig24 C 0 I 4
s caeSp111.Scaffold514     89005 15 +   141934 TGCTTATCCGTGTGA
i caeSp111.Scaffold514  I 1 I 534
s caePb3.Scfld02_62       448897 15 +   783054 CGGTTGACCGGTTGA
i caePb3.Scfld02_62     I 4 I 4
s caeJap4.Scaffold16506    12913 15 +   115485 GAATTCACCAAGAGT
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20838033 154 - 21540570 I

a score=1174.000000
s ce10.chrX              1464777 7 + 17718866 ATGTAGA
s caeRem4.Crem_Contig24   934565 7 -  1162296 ATGTAGA
i caeRem4.Crem_Contig24 I 4 I 427
s caePb3.Scfld02_62       448916 7 +   783054 GAGTACA
i caePb3.Scfld02_62     I 4 C 0
s caeJap4.Scaffold16506    12928 7 +   115485 GGGTAGT
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20838033 154 - 21540570 I
e caeSp111.Scaffold514     89020 534 +   141934 I

a score=1586.000000
s ce10.chrX              1464784 15 + 17718866 -AAATTTGTCTGAAAA
s caePb3.Scfld02_62       448923 14 +   783054 -Aacgtt-tctgaaaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    12935 15 +   115485 AAATgtt-tctgtaaa
i caeJap4.Scaffold16506 C 0 I 6899
e cb4.chrX              20838033 154 - 21540570 I
e caeSp111.Scaffold514     89020 534 +   141934 I
e caeRem4.Crem_Contig24   934572 427 -  1162296 I

a score=854.000000
s ce10.chrX              1464799 61 + 17718866 TTTGAAAATTCAGGGCTCAAGAG-------GAAAGTTATGAGAAAAAACAAATTATAAGGGTATGGTA
s caePb3.Scfld02_62       448937 68 +   783054 ctcatgaATTGATATTTAGAGAGCTGTATAGAAAAtcagatgaataaaaaaacaattaagaCATAGTA
i caePb3.Scfld02_62     C 0 I 556
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838033 154 - 21540570 I
e caeSp111.Scaffold514     89020 534 +   141934 I
e caeRem4.Crem_Contig24   934572 427 -  1162296 I

a score=0.000000
s ce10.chrX              1464860 1609 + 17718866  
e caePb3.Scfld02_62       449005  556 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838033  154 - 21540570 I
e caeSp111.Scaffold514     89020  534 +   141934 I
e caeRem4.Crem_Contig24   934572  427 -  1162296 I

a score=236.000000
s ce10.chrX              1466469 20 + 17718866 TATACAGTTACGATTAAATA
s cb4.chrX              20838187 18 - 21540570 tataaatttaatatcaaa--
i cb4.chrX              I 154 C 0
e caePb3.Scfld02_62       449005 556 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e caeSp111.Scaffold514     89020 534 +   141934 I
e caeRem4.Crem_Contig24   934572 427 -  1162296 I

a score=704.000000
s ce10.chrX              1466489 6 + 17718866 TTTCTC
s cb4.chrX              20838205 3 - 21540570 ---ctc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   934999 6 -  1162296 TTTTTC
i caeRem4.Crem_Contig24 I 427 C 0
e caePb3.Scfld02_62       449005 556 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e caeSp111.Scaffold514     89020 534 +   141934 I

a score=-3165.000000
s ce10.chrX              1466495 111 + 17718866 AAAACTGTC--------AAACAAGCTGAAACTCTATAGAACCAGG---TAAAAACGAAA-AAAAGTGACAATAACAA-----CTAC----AACTGATATTCCTGACTAACTAGTAGATCCCG--CTGCTGGAAA
s cb4.chrX              20838208  97 - 21540570 aaaattctca-----cGAAGGAAGTT-----AAGTAAAACCTAAG-----------------AAATGACAACAACATGCTGTCGAGAGGATGACAATATT--TTTCTC----GTTGTTCCCGGTCcacta----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   935005 114 -  1162296 AAAAccttcgaaaattgaaaaaaattgaaaaaagtaagagtCGAGAG-TAGAAACAAGGTAAAAATGACAATAACATGCTGTTTTCAAG-TAGTGATAT--------------TCGTTCGCGGTCCGCTG----
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       449561 110 +   783054 -----------------aaaaatatgaaaaatcctGAGAATCATGAGATAGAAACAACGTAAAAATGACAACAACAATCTCTCCAG----TAGTGATATTCGTTCCTC---TTTTCTTACCGGtccactggaaa
i caePb3.Scfld02_62     I 556 I 1
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e caeSp111.Scaffold514     89020 534 +   141934 I

a score=44487.000000
s ce10.chrX              1466606 78 + 17718866 GAAAAAAGGTTGTTGTT--TC----CTTCTGT---------TCGTGTTCAGTGTTCCGTCTCATATTCCAACATGA-CTTTTTGATGTTGATGA
s cb4.chrX              20838305 88 - 21540570 --aaaaatgttttcctt--tcatttttctcctcattttcttttgtGTTCAGTGTTCCATCTCATATTCCAACAAAA--CTTTTGATGTTGATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   935119 84 -  1162296 --AGAAATGTTTTTGCT--TC----ttcctcttattttcttttgtgtTCAGTGTTCCATCTCATATTCCAACAAGA--CTTTTGATGttgatga
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     89554 88 +   141934 ggaaaaaggtttttgct--tc----tttttcttttcatttttcgtgtTCATTGTTCCATCTCATATTCCAACaaggttttttttattttgatga
i caeSp111.Scaffold514  I 534 I 2413
s caePb3.Scfld02_62       449672 89 +   783054 aaagaaatgttttcgtTGCcc----ctcttatttttctttgttgtgtTCAGTGTTCCATCTCATATTCCAACAAGA-CGTTTTGATGTTGATGa
i caePb3.Scfld02_62     I 1 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I

a score=-54.000000
s ce10.chrX              1466684 36 + 17718866 ---AGGGACACAG-GAGGAGGGGTAAG------GAGGAAGAAAAAT
s cb4.chrX              20838393 40 - 21540570 ---AGGAAAGGAA-AATGTCAGTTGAAGGGT--GGCGaaaaaaaaT
i cb4.chrX              C 0 I 711
s caeRem4.Crem_Contig24   935203 43 -  1162296 ---aagaaaaaaagagtaataGTTGACGGACAAGAAGAGGGGGAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       449761 33 +   783054 gtcaagaaagaaa-aattgtg------------caggaaggaaaat
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=1074.000000
s ce10.chrX              1466720 10 + 17718866 GAAGAACAAA
s caeRem4.Crem_Contig24   935246 10 -  1162296 GTAGGATAAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       449794 10 +   783054 gaaagaaaaa
i caePb3.Scfld02_62     C 0 I 959
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=91.000000
s ce10.chrX              1466730 1 + 17718866 T
s caeRem4.Crem_Contig24   935256 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 21
e caePb3.Scfld02_62       449804 959 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=0.000000
s ce10.chrX              1466731 475 + 17718866 TGAGGTAAGAAGGGAGGGGGACATTGAAAACAGAAAACTTTATTCAAGTTGGAAATAATTTTGTGTGATCAGCGGTGTTAAAGTTAGAACAATTTCTGGAAATTTTAATAAGTGAAGTGAAAATTAACAAATTTTTTCCTAAATATGTATGTAGTTGTCGTGAAACTTAAACATATATTTATATTTTTTCGAAAAATTCGAATTGTTAGGCTTTAATATATTTTGTTTTAATTCGCGtaatatttaaaattattgacataaaataaaaaaaaacatttataaaaaaacatttacatttattaaaaaaattCAGAAAAATTTAGATTTTTTCCGGGaaatttattttttttttaaactataaaaCGATTTTTTAGTATTTCAAAAAAATCGTTTCCAAAAATTTCAAAATATTTTGTCACAAAATCAAGTTTCAAAAAATTATTGCTGAATTTATCTGCATGGGAAAAATTTTGCT
e caePb3.Scfld02_62       449804 959 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   935257  21 -  1162296 I

a score=3902.000000
s ce10.chrX              1467206 244 + 17718866 TTTTCAGATTGTGCATCTTTGTATAAAAATAAT--TGAACTAATAAAAATTCGAACTGaaaatatgtttttttatttaatttaaaaGGTAACAATTTT------TTATCAAAACTTAACGAACTCCTAACCCAAAGCCAATTTGTTAC-TCCAAAAATGTCTCGGCTCAAAAGCGGAACAGAACAAATTTATGAGGTATGACGGAAGC--------CACTCGAGCTCAAAAAACGCTGCG------CCAGAAATTCTAACAAATGAG
s caeRem4.Crem_Contig24   935278 239 -  1162296 tttttaaattttgaatttt-------aaataacGCTGAAC-AATCAAGTTTccaatttgtaaaattttt--------aagtaaaaa--taACAACACTAAACACCTATCAAAATTC------CTTTGAACCAAAAACCAATCCACAATAGTCATATGTGTGTCA---CAAACAAAGAACAACCCAAATTTATGAGGTATGACGGAAGCACCAGGAGCTCTCGAGCTCCATCGA-GCTCCGTTTCAccccgaaattttgaaaaatgag
i caeRem4.Crem_Contig24 I 21 I 1301
e caePb3.Scfld02_62       449804 959 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=0.000000
s ce10.chrX              1467450 607 + 17718866  
e caePb3.Scfld02_62       449804 959 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   935517 1301 -  1162296 I

a score=1843.000000
s ce10.chrX              1468057 93 + 17718866 AAAAAAAGTGACAAAACATTTTTTTTCGAGTAAACATTTTTTCGCAAAAAAGGGGTTCTCTCAGAAGCAAAATTTGAAAGAAATCGGGTTTAA
s caePb3.Scfld02_62       450763 77 +   783054 AAACAGGGTGacgaacc-tttttttttga-------------caaaaaaacgaGGTTCCTCCCCCTCCTA--TTTAGAAGAAATCGGGTTGAA
i caePb3.Scfld02_62     I 959 I 61
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   935517 1301 -  1162296 I

a score=0.000000
s ce10.chrX              1468150 32 + 17718866 AAGCACCCTTACACACCCCCGACTTGGAGCAC
e caePb3.Scfld02_62       450840 61 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   935517 1301 -  1162296 I

a score=191.000000
s ce10.chrX              1468182 2 + 17718866 GA
s caePb3.Scfld02_62       450901 2 +   783054 ga
i caePb3.Scfld02_62     I 61 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   935517 1301 -  1162296 I

a score=302.000000
s ce10.chrX              1468184 2 + 17718866 AA
s caeRem4.Crem_Contig24   936818 2 -  1162296 AA
i caeRem4.Crem_Contig24 I 1301 C 0
s caePb3.Scfld02_62       450903 2 +   783054 ga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20838433 711 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=36698.000000
s ce10.chrX              1468186 110 + 17718866 AAAACGTATCTTTTGACAAGAAAACGAAGAGGTTTTGTCAAATAAATTGAACAAGTTAGATTTGATTTTGAAACGACGACGGACCGCCTTTC----CGCCGGC-----ACAAGACACCT
s cb4.chrX              20839144 116 - 21540570 AACATGCGTCTTTTGACAACGAAACGGAGATATTTTGT-AAATAAATTGAAGAAGTTAAATTCGATTTTG--CCAACGATGCGgcttttttcttgtcttcaCTTCTTTACAAAACACCT
i cb4.chrX              I 711 I 2669
s caeRem4.Crem_Contig24   936820 107 -  1162296 AAAACGTATCTTTTGACAA-GAAACGAAGAGGTTTTGT-AAATAAATTGAACAAGTTAGATTTGATTTCGAAACGACGGCGGACCTCTTTTC----CGTCGC------ACAAGACACCT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       450905 113 +   783054 aaaacgtATCTTTTGACAA-GAAACGAAGAGGTTTTGT-AAATAAATTGAACAAGTTAGATTTGATTTCGAAACGACGACGGACCTCCTTTC----CGTCCCCGACAGAAAAGACACCT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=3872.000000
s ce10.chrX              1468296 17 + 17718866 CCTCCCTCAACTTTTCC
s caeRem4.Crem_Contig24   936927 17 -  1162296 CCTCCCTCAACTTTCTC
i caeRem4.Crem_Contig24 C 0 I 64
s caePb3.Scfld02_62       451018 17 +   783054 CCTCCCTCAATCTTTCC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=54.000000
s ce10.chrX              1468313 5 + 17718866 GTGTC
s caePb3.Scfld02_62       451035 5 +   783054 TTTTC
i caePb3.Scfld02_62     C 0 I 52
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   936944 64 -  1162296 I

a score=0.000000
s ce10.chrX              1468318 339 + 17718866 TTTATGTGGAAAATATATCAAATAAGTGACACATGCTGCGCGGGGGATTTTACGGGGGCATTTGCAGGGTGGCAGTGAAATTGATGGTGGCCGAGTTTTTTTTCTTGGCGGCCGCCATAAATTTGAAAAAAAAATCCAAAATTTCTAGAAATTCTACTTGGTCGAAGTATTTTTTTTAGAACAAGTTCTAATTTCTAAAAGCTCCATTTTTGAGGAATTTTTTTTTCAAAAAAAATTCCAATTTTTTTTTGTTTTGAAAATTACCAAAAACGTACCTAACTATTTTTGACGAAAATCCAAAACTACGTACTCAACTGTTACACCGCGCAATATTCTAAA
e caePb3.Scfld02_62       451040  52 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   936944  64 -  1162296 I

a score=151.000000
s ce10.chrX              1468657 3 + 17718866 AAA
s caePb3.Scfld02_62       451092 3 +   783054 aga
i caePb3.Scfld02_62     I 52 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   936944 64 -  1162296 I

a score=12704.000000
s ce10.chrX              1468660 104 + 17718866 AAGTTGAAAAAATGCAAATTTTTGGACTTGTTCTGGGCGAGCTT-TT----GAAATTGTTGCATGTCTAGAGTGTGGTCCCGT------AGTGGCCGGCAATTGGTTTTTCGATT
s caeRem4.Crem_Contig24   937008  97 -  1162296 AAAGTGGAAACATGcaaattttt-gtctgtttc---gCCACCTT-TTCA--GGCGATGTTGCATGTCTAGAGTGTGGTTTGAT------AG-----GACAATtggtttttcggtt
i caeRem4.Crem_Contig24 I 64 C 0
s caePb3.Scfld02_62       451095 107 +   783054 gagGTAGAAACATGCAAATTTTTCGTCTGTTTC---GCTACTTTCTTCATCGCTGATGTTGCATGTCTAGAGTGTGGTCTGATAGGAAAAG-----GACAATTGGTTTTTCGATT
i caePb3.Scfld02_62     C 0 I 2809
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=439.000000
s ce10.chrX              1468764  89 + 17718866 T-----------------GCGGGTAGTACATCGAAAGTGTTAACATTGGGAGAAGTACATTACTTCCTAGTTTTGGAAA-------CCCGAATAGTTTGAAAATTTCAAAAAA
s caeRem4.Crem_Contig24   937105 105 -  1162296 ttcgaaaggaaaaaaatgtcgggtggtaca-aaaaaatg-------tggagcagaaaaataacttcctagttcaaaaaaatgtgcGTTTAGAAAGTACAgacctttcaaaaaa
i caeRem4.Crem_Contig24 C 0 I 592
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=0.000000
s ce10.chrX              1468853 509 + 17718866 AAATTCGGAGaaaaattaatttaaaaattataatCCTTAGAAATTATGTTTCAAAAAAATCAAAAACATGGTGCATCGATAATTGAATTTTCAGTATTTTCAGACTTTAAGCTATCTTTTGTTCAGTAAATTCACTGAATTAAGAATAAATTGAGATTTTGAAGCATACTATGAAACAAGTTAGGAAAATTTTCAAAAACATGGTGCATCGACTGGAAATTTTTTTCAAAATTGTGAAATGAGGATATTATTATAGTTTTTAAAATAATTCGATTTAAAATATGAGAGAATAACGGTTTTTCAAATTTTTCAAAAGGTGGTGCATCGCCTAGGAAATTTAAAGTTTTTCAGAATTTTCGGCTGTAAAAATTTCTAAATTTAAGATGATTTTTAAAAAATCAAATGTATTTTTCAAATTTTAATCTGAACAATTTCTAAGtattatattaaattttaaaactaattttttGTTAGAAAAGAAACATTACCACTTGAAAGCTGGAGCTCAT
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   937210 592 -  1162296 I

a score=3449.000000
s ce10.chrX              1469362 185 + 17718866 CGAATGATTTCTGGTGAAG---TAGACTTGGGGGCCGGGCTAACCTCATTTCTGGTTTTCTCGTAGTTTTCTTTTCTCTATTCCAATATGGTCACTGGCAA------GAGGTAAGGAAAGCGAAATGAGCCGTTTC----------ACTGGGAATTAGGGTAAAAAGTAACGTTTTGAAGCGAAAATTAGGTAAAGGGTAATGA
s caeRem4.Crem_Contig24   937802 186 -  1162296 CGGATGATTTCTGGTGAAGAGTTGGTCTCGGAGAC-----TAACCGAATTTCTGGTTTACTTGTCGTTTTGGAAGGTTGAGT------TGGTCACCGAAAAACGGGTGGAGTCtgagagaagaaatgaggCGTCTCCCCCAAAATGACTTTAAACTTGGGTAGa---ttagtttttg----gaaaattagaaacaGGACGATGA
i caeRem4.Crem_Contig24 I 592 I 1418
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=0.000000
s ce10.chrX              1469547 6902 + 17718866  
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   937988 1418 -  1162296 I

a score=3546.000000
s ce10.chrX              1476449 314 + 17718866 TCACTTTTCAGTGTTCAGTT--TTTTTCT----TCAAAACGCATTATCCAGATTGAATTCTT----CCCACTTCCTTTCTCTTCCTCCCACTTAG---ATTCTTCTAGTTTTC----------GCTATGCTTTGTCTAGTGCAGTTCGCTGCTTTCTGACTGACAAATCGCGTTTGGAAGACAA-----CATTTTCCGGCGGCAG--AGCTTTTTGGAATCGGTTTTTTTTTAGTTTTGAAAAT---------TTTTGTTCGGCTCCTG-AGAATTATAGTTTAGTCTGGGTCATTGATTTTTAA---AGATTTTTGTCCCGATTTTGCCGAATTTTGCAAATGACTGATCATGATT
s caeRem4.Crem_Contig24   939406 350 -  1162296 TcactttttgagctttttttgctttttctgaTGTGAAAATGCATTAACCAGATTGAATTTCTATACCAGACTCCCTTGCC--TCCTCCCACTCAACCAagatttctagttttcttttcaaaaagtgacgCATCGTTTTGTC---TTCCAAGTTTTAGCTCTGACAAGCCATGGTTAGAAGAAAAACGCGCATTTTCCGGCAGCTAccaattttttcgtgtt--tttctgttttcttggGAAAATGGAGGCGGACTTTGTGGTGTTCTCGTAGAATAAAAACGCagtaagtttttcttttttttaatcaattttttagtttttcttttgtagTTATTTGGAACCGGCAtaagacaatt
i caeRem4.Crem_Contig24 I 1418 I 48
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=0.000000
s ce10.chrX              1476763 58 + 17718866 GATATAAATTTTAGAACAGAAAATAATGAAAAATCCAGTAAACCATGTGTTTATCTCG
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   939756 48 -  1162296 I

a score=-375.000000
s ce10.chrX              1476821 60 + 17718866 ATTCTTTCCACTTTACAACGACAAATTTAAACTAAATTTCCACAAAATT-----CCACCACCTAA
s caeRem4.Crem_Contig24   939804 57 -  1162296 ACTTTTTCAA----ACATCgtcaa--ttagaaaaaatagcaaaaaaagtgaaagaaactACAT--
i caeRem4.Crem_Contig24 I 48 C 0
e caePb3.Scfld02_62       451202 2809 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=5122.000000
s ce10.chrX              1476881 34 + 17718866 TTTTCTAGCAAGATTCACGTAAATGATGACAATT
s caeRem4.Crem_Contig24   939861 27 -  1162296 ----CTGCCAACACTCACGAAAATGATGACA---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       454011 34 +   783054 TTTTCTATCAACATTCACGTAAATGATGACAATT
i caePb3.Scfld02_62     I 2809 I 38
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=-118.000000
s ce10.chrX              1476915 135 + 17718866 AATTGGCCTGGTGATTGTATAAAACCTGCTGAATTTTCAACATTTTCAGA----AACT-TTTCGAT---------------AAATTTTGCGTTTCGAATAATTTTATTTTAAGCTTGAACTTGAATGTAGT-ACGTTAATTTCTAAAAGCTCTCGT
s caeRem4.Crem_Contig24   939888 153 -  1162296 ---TGATCAATTGATTATATAAATGCaggtgttttttgaaagtcttTCAAGTTCAGCTATTTCAATTTagcaaaactgacaaaaatagtCGTTACGACAACTCAAATTGTCCCTGCAACTTTGCTTTTAGTCACAATAATATCTTATACGTATGGT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       454045  38 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=-6976.000000
s ce10.chrX              1477050 227 + 17718866 TTTTCTGAAAAACATGGTGCACACAACATCGGAGGCTAATTTTAATTTTAAATTCAAAATTTCCCTATTTTGAATAATTTGTTATAGGCTTTGGAGTTACAAATGTTTTTTGAA----AAGAAAATTTTTATATAAAAGCTTTCCACAAATTTACCCAAAAGTTATTCGTTTTTGAACGTGATTTTTTTTAAACAA------------------ATTCTCGTAAAATTAATACAATTTTCTTTTTTTTT-
s caeRem4.Crem_Contig24   940041 165 -  1162296 ------------CACT-----------TTAATAA-------TTCATTTCACACTAACACTTTTCCTT-----------CTGTAATACTTTTTCTAGACAC-----tgttttgga----agaaaatgttTAGTATGAAGTCAT--CAAACTTTCAAGAGAGaaacaatc----------agaatttttctcaaatat------------------cgCGTcggaaaacgtg----atttttgtcttttcc-
i caeRem4.Crem_Contig24 C 0 I 68
s caePb3.Scfld02_62       454083 203 +   783054 ttttttggaaatcattatt-------cttcagaa-------tttattatccatt-----ttttccttt------agGCTTGGTAAACTAttccaa-----------gttttgaatttcaggatA---TTAGtgtgagaaca---aaaaattttatgtgaaaaaaattt-----cgtcaaGCAtttttttGGGATATGCTACTACCACTTTCTAATAAATCAGCAGATTTgttaaacttttgattttttgt
i caePb3.Scfld02_62     I 38 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=-805.000000
s ce10.chrX              1477277 75 + 17718866 TCATTTTG-AAAACTCCTAAAATATCTATAAAAATCTTGCTACCC--------AGTTCC------ACTACCCCAAATCTTTTCCTCTTTT
s caePb3.Scfld02_62       454286 87 +   783054 tatctccGTAAAGCGCACAGCAAAC---TAAAAACCGTAACACACTTTTTAGGAATACCTCTAAGGCTATTACGTATTAATTCCTCTACC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   940206 68 -  1162296 I

a score=5521.000000
s ce10.chrX              1477352 131 + 17718866 CCTCCGTTTT-------CTTCCACGCCAGT-TTTATCCATTTCGTCCATGACCTCAATACGTTGGCCTCCTCCTCCTTCGCCTCCTTTTCCTCTTCTG----ACCGTCCTCTCTCGAATCCTTATCCATTTTCCGTCTACCCA
s caeRem4.Crem_Contig24   940274 135 -  1162296 CCTCCGTCCTACCACAACCACGTTTTCCGT-TTTATCCGTTTCGTCCATGACCTCAATACCTT-------TCGTCCTCCCCCTTCTTATCCTTCCTTACAATTCTGTGCCCCCGAGAacatttcgctttttttcttctgccTA
i caeRem4.Crem_Contig24 I 68 I 648
s caePb3.Scfld02_62       454373  94 +   783054 -----------------TCTCATTCCCCTTCTTTATCCGTTTCGTCCATGACCTCAATACCAT-------TCCCTCTTTGC---CTCATTCTTTCTTA--------TTCACC---------TTCCCTTCTTCCCTCCT-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I

a score=1531.000000
s ce10.chrX              1477483 48 + 17718866 GAAAGTGTACCCGACAAGAACGTTTT-CGGGATTTTTTTCTTGATTTTT
s caePb3.Scfld02_62       454467 47 +   783054 -AAAACGTGTCTTAT-AGAACGTTTTCCGTCacttttttcccgatttct
i caePb3.Scfld02_62     C 0 I 43
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   940409 648 -  1162296 I

a score=0.000000
s ce10.chrX              1477531 462 + 17718866 AGCTACTATTGTAGTCTAAGTAGTAGGCTAAAAACATGCCAAAAAACTTAAAATGTTTGGATTTTTGAAGAAAAAAAAAAGAAATATTGATGTAAAGTTTTGTATTTTCGAATGATTTTTTTTACCATCAGTTTCAACAAAAATAACACTAAATTTTAAGACGCAAAAATCATCCCCATATAGATTTTCCAATTCCAAAAATTTTGGTATTTTTCACAGACTCTTTTTCAAAAAGGTTTCGAAAGTTTCGGCATGTTTTTTTTTTAATTTTCAGAAAGTTAGGCAATTTATTATAATTAAAAAAGAAACATTTCAAAACTTTTGGCATTTTTTTTCGAAATTTTTTAGAAACGTTCGAAATTTTGGCAGACTTTCAAAATTTTGGCaaaaaaatttaaattttaaatataCAAACAACCAATTTTTTTCCAATTCTCAAGTAGGATTTTGTAGCCGCCTTCT
e caePb3.Scfld02_62       454514  43 +   783054 I
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   940409 648 -  1162296 I

a score=1028.000000
s ce10.chrX              1477993 140 + 17718866 CCATTGATCACTGTCGTTCGGGTACATCCGTATCTCTCCAAATTT--ATTTTCCTTATCAGTCGTTAT-CAATTTATCTTCAGCATGTTGTGATAAGAAT--TCGAATCGCACCATATTTTCGGGTGAACCTCAGCGAGAAAAAA
s caePb3.Scfld02_62       454557 121 +   783054 CCAATGATCTCC--CGTCCGGGTACACCTGtatccttttttatttctgttttcccGACAAAACTTTTTGCCTGCTATCGCTTACAATTATTGATAACAATCTTTTCATGGCACCATATTTTCT----------------------
i caePb3.Scfld02_62     I 43 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     89642 2413 +   141934 I
e caeRem4.Crem_Contig24   940409 648 -  1162296 I

a score=-4871.000000
s ce10.chrX              1478133 501 + 17718866  
s caeSp111.Scaffold514     92055 315 +   141934  
i caeSp111.Scaffold514  I 2413 C 0
s caePb3.Scfld02_62       454678 367 +   783054  
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeRem4.Crem_Contig24   940409 648 -  1162296 I

a score=14034.000000
s ce10.chrX              1478634 273 + 17718866 TTTCTTCAGAAACTTAAGAAAACTTTTTTCCCTACCCGCCAA--------------GCCCCGAAAAATATTC-TCCATTCTGAATATTCAATTGCT------TCTCTTCCTTTTCT------CCAA-----CACAGAACGTCACGTTTTTCTTCTTTTTAGTCGTTTTTTTTCTTCCTTTTTTAAAAAAAGAAGCCCCCG--CAACTC------TTTTCTTTTTGGAAAAAACGGGGATAGATGGGATGGAGAAAACG-GAGAGCGAGAAGCTAAAGT--TGAA-TCCCAAAAGGTTTCTGATTTCCATGCCGCTTT---
s caeRem4.Crem_Contig24   941057 280 -  1162296 ttttttaaaaatcctaagaaaa---atttcggattcccgcaaaaaagaaattgtatgcttc--------ttctttttttctgaatattcgaTTGC-------TTTCCTCCTTTCCC---------AAAAACGGCAGAACGTCacgttttcctctttttt--tcggttttct--tttcttttttcaaaaaagaggcccacg--caacttcccatcttttcttttct---tctggcGATAAAGCTaaaaaa-aaGATGCG-AAAAGGATAGAGTTGAATCCCAAAA-TCCCAAAAGGTTTCTGATTTCTAtacatctcttt-
i caeRem4.Crem_Contig24 I 648 C 0
s caeSp111.Scaffold514     92370 237 +   141934 -tttct-------------------ttcccttctttctttaa--------------------------------gttttctgaatattcaattgCTACCctttcccatcttttctctttttcccgaaaaaccagagaacgtcacgttttcttctttt--------------------ctttttc---gaaaaagccCACGCACAACTTCCtatccttctttttttggataaagggaaaaggcaaaaacagaaaagaggCAAAAG----TGGCAAGAGCCATGAA-TCCCTGAAGGTTTCTgatttcctt---tctttttt
i caeSp111.Scaffold514  C 0 I 136
s caePb3.Scfld02_62       455045 208 +   783054 -cttct-------------------attctttttttctccaa---------------cttc--------ttc-ttttttttgaatattcaattgctac----tctcctcttttttcatcccTCCAAAAACCCTTCTCGCGTCACGtttttttC-------------------------------------GAAGCCCACG--caactt------cttcctttttt------aagGATAtggccaaaaaagaagataca-AAAAG----TGGCAAAAGCCACGAATTCCCAAAAGGtttctgatttccat---ttt-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I

a score=-599.000000
s ce10.chrX              1478907 62 + 17718866 TCTCGCATTTCTCCGTTTGGTCTTGTTTTCTTAGACTGAGAAAACAAAAATAAAATGGAAAA
s caeRem4.Crem_Contig24   941337 41 -  1162296 ttttttcttttttcatt-----ttgttctcttGTTATG-----TCAGAATG-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       455253 47 +   783054 ---cttctttttccatt-----ttttt---ttgaaacg----aacagaaagaagaagaaaca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     92607 136 +   141934 I

a score=321.000000
s ce10.chrX              1478969 10 + 17718866 TCACGTTTTC
s caeRem4.Crem_Contig24   941378  7 -  1162296 ---CACTTTC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       455300  0 +   783054 C
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     92607 136 +   141934 I

a score=0.000000
s ce10.chrX              1478979 125 + 17718866 TAAGTTTTTTGTTGGAGCTcctagatctaagcatgagcctaatcctaagcctaaacctatgccaaagccttagcctcagcctgagcctaatcctaagcctaaatctatgcctaagcttaacacct
e caePb3.Scfld02_62       455300   0 +   783054 C
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     92607 136 +   141934 I
e caeRem4.Crem_Contig24   941385   0 -  1162296 C

a score=373.000000
s ce10.chrX              1479104 4 + 17718866 aaga
s caePb3.Scfld02_62       455300 4 +   783054 aaga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     92607 136 +   141934 I
e caeRem4.Crem_Contig24   941385 0 -  1162296 C

a score=-5960.000000
s ce10.chrX              1479108 182 + 17718866 cagacccattttaaaaaTCCAAACACAAAACTCTTCCAGTGTTTTGCACTTTCCCGAGCTAATTTTCTTC---------TATTTTTTTGAATTTTTTGGTTAGTGCCCTTTTGTGAATGCACTTTTGCTCAAAAATTGGTATAAAAGAGACATTCG--TTTTCGAAC-ACTTTGTGTAATTGTTTCAAAAATCT
s caeRem4.Crem_Contig24   941385 104 -  1162296 ------------------------------------------------------CAGACCGattatctca-aaaagttgtatttttt----cttcttttccgacGC-----------------------CAAGAGTTGGTATAAAAGTAGTTCAAAACCTTCCCAGC-GCactgaat-------ttgaaattct
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       455304 124 +   783054 -------------aaaatagaagaaaaataag-----attgTCTTGCACTTT-CTAGACCGATTATCttacaaaaattatatttttc----tttcgagaaaaatga-----------------------agtgaagtGGTATAAAAGAGCCATAAA-------TAGCAGTGTCGAAT-----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeSp111.Scaffold514     92607 136 +   141934 I

a score=2729.000000
s ce10.chrX              1479290 172 + 17718866 --------------GATGCAAAAATATTAATAACTTAACATTGCGA-------AATCCGGAGAAGCTAGAGACGCAGACTTCGCGGAGCAGAAAAACGTGTTGTTTACTCAAATTTCCTTTGACCGCCTGCGTTCGCCT---------CAAAACACTTATTCC-TCTCTTGTTTTTTTCTGAG-----TTCCT------------------TTTTTCCTTCTTGT-G
s caeRem4.Crem_Contig24   941489 172 -  1162296 --------------gatgcAA----ATT--TCCTCCA-CGTTGCGA-------AAT---GTGGTTAGAGACGCAGGGA---CATGGAGCA-AAAAACGTGTTGTttactcactttttctttttctgcctGAGtctttttgcgttccctcaagagactcttttc-tctcctcttgttttcttaaatttcttctc------------------ttttcttttcttttg-
i caeRem4.Crem_Contig24 C 0 I 83
s caeSp111.Scaffold514     92743 156 +   141934 gattcaaaaatacgAATGCAA----ATT--GTGCtta---tttcga-------aa------gaaaataacGAGAGAGA---CGCAGGTT--GATGGGGTCTTGTTTACTCATATTTTCTTTGCCTGCATGAGTCTTTCC---------------AGTGTTCAC-ACactctttcatttct--------ctctt------------------gttttttttctggc--
i caeSp111.Scaffold514  I 136 C 0
s caePb3.Scfld02_62       455428 178 +   783054 --------------GATGCAA----ATT--TCGCTTA---TTTCGACTCCCCCAA------AGACGCAGACACCTCAA---CATAGAGC--AAAAACGTGTTGTTTACTCTTAtttttttGCCGCGTTTGCGTTCCCTCTC--TCATTCAA---AGTGTCTACTTCtcccttgtttttct--------ttctctatgtcttattttccagatttttttttcttct--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I

a score=705.000000
s ce10.chrX              1479462 37 + 17718866 GAATTTTTTTTAATTTTTTATGCTACGTGGCATACGC
s caeSp111.Scaffold514     92899 34 +   141934 -agtttttttcaaactttaaCATT--GTGCcaagtaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       455606 34 +   783054 -aattcttTTACTCATTTTAGATT--GAGCTAACAGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    12950 6899 +   115485 I
e cb4.chrX              20839260 2669 - 21540570 I
e caeRem4.Crem_Contig24   941661 83 -  1162296 I

a score=-2611.000000
s ce10.chrX              1479499 27 + 17718866 TTTTTAGTATTCCCTCCTAATTCTGAA------
s caeSp111.Scaffold514     92933 14 +   141934 tttttca-------------atgtaaT------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       455640 17 +   783054 ATTTTGACgt----------atttgaa------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    19849 24 +   115485 tttttaatact---------tcctaaaattata
i caeJap4.Scaffold16506 I 6899 C 0
e cb4.chrX              20839260 2669 - 21540570 I
e caeRem4.Crem_Contig24   941661 83 -  1162296 I

a score=-4781.000000
s ce10.chrX              1479526 40 + 17718866 TTTCTTTCAGGT-AACTCGTT---CTCTTTGGAACAAGTGA----------ACA
s caeRem4.Crem_Contig24   941744 53 -  1162296 tttttttcaggt-aaccTTATCTGTTCCTTGGAACAAGCAAAGTacgaaaaaca
i caeRem4.Crem_Contig24 I 83 I 6
s caeSp111.Scaffold514     92947 39 +   141934 -CTTTTGCAGGT-AAC--------TGTTTTAACACCAATTGCGTAC-----ACA
i caeSp111.Scaffold514  C 0 I 5
s caePb3.Scfld02_62       455657 27 +   783054 -ttt---caggtaAAC--------TTCTgtgaagtcag---------------a
i caePb3.Scfld02_62     C 0 I 5
s caeJap4.Scaffold16506    19873 35 +   115485 tttctttCAGGT-AATCTTCTAT-TCCAttctaaaaa-----------------
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20839260 2669 - 21540570 I

a score=37804.000000
s ce10.chrX              1479566 72 + 17718866 ATGTCGGCGAAGGCTGTGAGCGAGTTATCTGGAAAAGAAGTGAGTGCAAATTTCCAACTGGaaaaaaa----aatt---
s cb4.chrX              20841929 50 - 21540570 ATGTCTGCGAAAGCCGTTAGTGAGTTCTCCGGAAAAGAGGTAAGct--------------------------aatt---
i cb4.chrX              I 2669 I 8
s caeRem4.Crem_Contig24   941803 61 -  1162296 atgTCGGCAAAAGCTGTTAGCGAGTTATCTGGAAAAGAGGTGAGCT---------------ACAAAGATACAAACT---
i caeRem4.Crem_Contig24 I 6 I 563
s caeSp111.Scaffold514     92991 58 +   141934 ATGTCGGCAAAAGCAGTTAGCGAGTTATCTGGGAAAGAGGTTAGTCT--------------GAAAAAC----TATT---
i caeSp111.Scaffold514  I 5 I 24
s caePb3.Scfld02_62       455689 57 +   783054 atgtccgCAAAAGCTGTCAGCGAGTTGTCCGGAAAAGAggtgagtc---------------aaaaaaa----aatt---
i caePb3.Scfld02_62     I 5 I 18
s caeJap4.Scaffold16506    19908 73 +   115485 atgtcggcaaaagCTGTCAGTGAGTTGTCTGGAAAAGAGGTAAGTGCTGGCGACTACcctcgcgaa------aattcgc
i caeJap4.Scaffold16506 C 0 C 0

a score=-32348.000000
s ce10.chrX              1479638  84 + 17718866 ttaattt-----------------------------------aaaaataGAATGAT---------------CCCACCAAACTTCTT-------------------------------------GCAATTTGACATTTTTAAC-------------------AAATTCTCAACAAA------ACAATCTAAATTTTA
s cb4.chrX              20841987  58 - 21540570 -t--ttttcga-------------------------------aaaa-------------------------tcgataaaactaTTT-------------------------------------CCACATTAAGACA---ATT-------------------GAATATT--------------------GAATTACT
i cb4.chrX              I 8 I 12
s caeSp111.Scaffold514     93073 175 +   141934 ttaattttagagtATAGGTTACAAATTACATCGAAGtctaataaaaatatttcgtTG--------------TTGTTCGAACTCTTTCTCTTGCAGTTTACAATTGAAGTACCAAAataatctgtttttttgagatattcATTCCACattaaactattttttgaatttttaaaaag-------caagccgaattttt
i caeSp111.Scaffold514  I 24 I 38
s caePb3.Scfld02_62       455764  89 +   783054 tt--ttttgga---------------------aaagcatga-aaaattgacacgttt--------------ttgcaaaaattctat-------------------------------------ttttttcgtgatg---aatcca----------------aaatttccaataaa-------------aaactcca
i caePb3.Scfld02_62     I 18 I 33
s caeJap4.Scaffold16506    19981 102 +   115485 --------------------------tccattg---------aaaaatgagacgcagcgttctcacgcgacgcaaccgcagcgcgt-------------------------------------gccgtcggcggcaaaaaat-------------------aacgtttgaaaaaaagcagtacaacaaaaata---
i caeJap4.Scaffold16506 C 0 C 0
e caeRem4.Crem_Contig24   941864 563 -  1162296 I

a score=747202.000000
s ce10.chrX              1479722  997 + 17718866  
s cb4.chrX              20842057  918 - 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig24   942427 1162 -  1162296  
i caeRem4.Crem_Contig24 I 563 C 0
s caeSp111.Scaffold514     93286  918 +   141934  
i caeSp111.Scaffold514  I 38 C 0
s caePb3.Scfld02_62       455886  917 +   783054  
i caePb3.Scfld02_62     I 33 C 0
s caeJap4.Scaffold16506    20083  921 +   115485  
i caeJap4.Scaffold16506 C 0 I 1067

a score=-2181.000000
s ce10.chrX              1480719 13 + 17718866 G------TC-TAAAATATAG
s cb4.chrX              20842975 19 - 21540570 GATTTACTA-TTCAATAtag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   943589 18 -  1162296 G--TCATTATTTTGCTAGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     94204 12 +   141934 -------TG-TTAAATATTG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       456803 14 +   783054 g-----ttt-ttgaatatga
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    21004 1067 +   115485 I

a score=2036.000000
s ce10.chrX              1480732 4 + 17718866 AATT
s cb4.chrX              20842994 4 - 21540570 attt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   943607 4 -  1162296 ATTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     94216 4 +   141934 TTTT
i caeSp111.Scaffold514  C 0 I 32
s caePb3.Scfld02_62       456817 4 +   783054 tttt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    22071 4 +   115485 AATT
i caeJap4.Scaffold16506 I 1067 C 0

a score=-5018.000000
s ce10.chrX              1480736 17 + 17718866 TAAAGTCTAGCCATATT
s cb4.chrX              20842998  9 - 21540570 --------atttatttt
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig24   943611  9 -  1162296 --------TAAGAATTT
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62       456821 15 +   783054 --tttcattgcaagCTT
i caePb3.Scfld02_62     C 0 I 15
s caeJap4.Scaffold16506    22075 14 +   115485 ---TAATTATTCATACT
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     94220 32 +   141934 I

a score=452699.000000
s ce10.chrX              1480753 486 + 17718866 TGTTTCAGCGACACTGTCTGTGACCTCGGTGGAGCATCAGAACTCGCCAACTACGGAGAATACTCTGGAGACCCGTCTGAATCGCAAACCTATGAATACGCAAAGACACTCCTCTCCGTGATGACCGAAGGTACTCCGAGACCTGATGGAAAAGTCCTCATCATCGGAGGATCCATCGCCAACTTCACAAATGTTGCTAAAACTTTTGGTGGAATCGTCAGAGCCTTTGAAACGTTTGTCTCAAAGCTCAAAGAGCACAAGGTGACAATTTTCGTGCGTCGCGGAGGCCCAAACTACCAGGAGGGACTCAGAAGAATCAAGGATGCTGCGACAAAGTTGGAGCTGCCAATTCATGTATTCGGACCTGAGACTCATATGACGGCGATTGTTGGAGCAGCGCTCGGAGTGAAGCCAATGCCAACAGTTCCGACAGCTCCACAGACTACCGGACAGTTTTTGTTGAGCCCTGAGAGAAATGTAGGTTTT
s cb4.chrX              20843010 467 - 21540570 ttttccagtgaTACTGTCTGCGATCTTGGTGGTGCTACTGAGCTTGCCAACTACGGAGAATACTCTGGAGACCCGTCAGAATCTCAAACATATGAGTATGCAAAAACCATTCTCTCAGTTATGACCGAGGGCGCGCCAAGACCAGATGGCAAAGTCTTGATCATCGGAGGATCTATTGCGAATTTCACAAATGTTGCTAAAACATTCGGAGGTATTGTCAGAGCTTTCGAGAGTTTTGTGTCGAAGCTCAAAGAACACAAAGTCACGATTTTTGTGCGCCGTGGAGGACCAAACTACCAGGAAGGCctgagaaaaatcaaagatgCTGCCACAAAATTGGAGCTGCCAATCCACGTTTTTGGACCGGAAACTCACATGACAGCAATAGTTGGAGCAGCACTCGGAGTCAAGCCGATGCCAACAATCCCAACTGCTCCTCAAACTACCGCACATTTTTTGTTAAGCCC-------------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24   943623 485 -  1162296 TGTT-TAGTGACACCGTCTGTGACCTTGGAGGTGCAACTGAACTTGCCAACTACGGAGAATACTCTGGAGACCCATCAGAATCTCAGACTTATGAATACGCCAAGACAATCCTCTCAGTTATGACTGAAGGAGCTCCAAGACCAgatggaaaagttttgatcATAGGAGGATCCATTGCTAACTTTACGAATGTTGCTAAAACTTTTGGTGGAATCGTCAGAGCTTTTGAGACCTTTGTCTCCAAGCTTAAAGAGCACAAAGTCACAATTTTTGTCCGTCGTGGAGGACCAAACTACCAAGAAGGATTGAGAAGAATTAAGGATGCCGCAACCAAGTTGGAGCTTCCAATCCATGTGTTTGGCCCAGAAACTCATATGACTGCTATTGTTGGCGCAGCCCTCGGAGTCAAGCCAATGCCAACTGTACCAACTGCTCCACAGACCACTGGACAGTTCTTGTTGAGCCCGGAACGTAATGTGAGTTTT
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514     94252 481 +   141934 TATTTCAGTGACACTGTTTGTGACTTGGGTGGTGCTTCTGAACTTGCAAACTACGGAGAATATTCTGGAGATCCATCTGAGTCTCAAACGTACGAATATGCAAAAACAATCCTTTCTGTAATGACTGAAGGTGCTCCAAGAACAGatggaaaagttttgattatCGGCGGATCAATTGCTAATTTCACAAATGTTGCAAAAACATTCGGTGGAATTGTTCGAgcttttgaaacttttgtgTCTAAACTCAAGGAGCATAAAGTTACCATTTTTGTTCGTCGTGGAGGACCAAACTACCAAGAGGGGTTGAGACGAATCAAAGACGCTGCTACAAAACTAGAACTACCCATTCATGTTTTCGGACCAGAAACTCACATGACAGCCATCGTTGGAGCAGCTTTAGGTGTCAAACCAATGCCAACTGTACCAACCGCTCCACAAACTACTGGTCAATTCTTGCTGAGTCCCGAAAGAAATGTAA-----
i caeSp111.Scaffold514  I 32 C 0
s caePb3.Scfld02_62       456851 486 +   783054 AATTTCAGTGACACTGTCTGTGACCTTGGAGGTGCTTCAGAGTTGGCAAATTATGGAGAGTACTCTGGAGATCCATCTGAATCTCAAACATACGAATACGCTAAGACCATTCTCTCTGTGATGACTGAAGGAACACCAAGACCTGATGGAAAAGTATTGATTATTGGTGGATCTATCGCCAATTTCACTAATGTTGCTAAAACTTTTGGAGGAATCGTCAGAGCGTTCGAGACTTTCGAATCCAAACTCAAAGAACACAAAATCACTATTTTTGTTCGTCGTGGAGGACCAAATTATCAAGAGGGATTGAGAAGAATCAAGGATGCTGCTACAAAATTGGAGTTGCCAATTCATGTGTTTGGACCAGAAACTCATATGACTGCTATTGTTGGAGCAGCTCTTGGAGTCAAACCAATGCCGACTGTTCCAACAGCTCCACAGACCACCGGACAATTTTTGTTGAGTCCAGAAAGAAATGTAAGCTAT
i caePb3.Scfld02_62     I 15 I 8
s caeJap4.Scaffold16506    22089 483 +   115485 ---TTTAGTGACACTGTTTGCGATCTTGGCGGAGCTTCTGAACTCGCAAACTACGGAGAATACTCTGGCGATCCGTCTGAGTCGCAAACCTATGAATATGCAAAAACGATACTCTCGGTAATGACTGAAGGAGCTCCACGCCCCGATGGAAAAGTGCTGATTATTGGAGGATCTATTGCAAACTTTACAAACGTTGCCAAAACGTTTGGTGGAATCGTTAGAGCTTTCGAAACCTTCATAGGCAAGCTCAGAGAACATAAAGTGTCTATTTTTGTGCGTCGTGGTGGTCCAAACTATCAGGAGGGTCTTCGCCGTATCAAGGATGCTGCTACCAAGCTAGAGCTTCCAATTCATGTCTTTGGTCCGGAAACTCATATGACGGCTATTGTGGGAGCCGCTCTTGGTGTAAAGCCAATGCCAACTGTGCCAACAGCTCCACAGACTACTGGACAGTTTTTGTTGAGCCCGGAgagaaatgtttgtttt
i caeJap4.Scaffold16506 C 0 C 0

a score=-579.000000
s ce10.chrX              1481239 10 + 17718866 TAGGACCAAA
s caeJap4.Scaffold16506    22572  1 +   115485 t---------
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       457337  8 +   783054 I
e cb4.chrX              20843477  0 - 21540570 C
e caeSp111.Scaffold514     94733  0 +   141934 C
e caeRem4.Crem_Contig24   944108  0 -  1162296 C

a score=-13521.000000
s ce10.chrX              1481249 111 + 17718866 AACTAGCTACGTTGGTGcgaggtgtcatgctgtttcattacggtttgatctgcaaaaaagtgcgggaatttttttcccgaaaaaatgggacgtcagcaagctttgagtcat
s cb4.chrX              20843477  16 - 21540570 -----------------------------------------------------------------------------TGAAAGAA----ACGTGAAT--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     94733  13 +   141934 ---------------------------------------------------------------------------------AATC----ACTTCAAAA-------------
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506    22573  19 +   115485 -------------------------------------------------------------------------tttttaagattt----aaATTAT---------------
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       457337   8 +   783054 I
e caeRem4.Crem_Contig24   944108   0 -  1162296 C

a score=-5718.000000
s ce10.chrX              1481360 25 + 17718866 gcgaatccagttgagaagtatgcgt
s cb4.chrX              20843493 21 - 21540570 --GAATACAA--AGAACAATTTTGT
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig24   944108 10 -  1162296 ---------------GCGTATTCAC
i caeRem4.Crem_Contig24 C 0 I 17
s caeSp111.Scaffold514     94746  7 +   141934 ------------------TATGTGT
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506    22592  5 +   115485 --------------------TTTGC
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       457337  8 +   783054 I

a score=25.000000
s ce10.chrX              1481385 31 + 17718866 ctaaattcccgccattttcgtagatctacgt
s caeJap4.Scaffold16506    22597 14 +   115485 --------------TCTTTGTAA---TACGT
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       457337  8 +   783054 I
e cb4.chrX              20843514 13 - 21540570 I
e caeSp111.Scaffold514     94753  0 +   141934 C
e caeRem4.Crem_Contig24   944118 17 -  1162296 I

a score=0.000000
s ce10.chrX              1481416 54 + 17718866 agatcaaattgaaatgggacactttgacaccacgtTTGTTGGTGCGAAGCGGGA
e caePb3.Scfld02_62       457337  8 +   783054 I
e caeJap4.Scaffold16506    22611  0 +   115485 C
e cb4.chrX              20843514 13 - 21540570 I
e caeSp111.Scaffold514     94753  0 +   141934 C
e caeRem4.Crem_Contig24   944118 17 -  1162296 I

a score=-13974.000000
s ce10.chrX              1481470 116 + 17718866 AACATAGGCCAGCCACAAGCGGGCTCACTTAGGGCCTAGTGAAAAATCGAAAATGCCCTGTGCATTCAGATCTAGTGAACTTGAAGAATCCATTTTTCTACAATTCAAATCTATCA
s caeRem4.Crem_Contig24   944135   7 -  1162296 -----------------------------------------------------------------------TTACTTA--------------------------------------
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold514     94753  14 +   141934 --------------------------------------------------------------------CCTGTAATAAAT-----------GT-----------------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       457345  21 +   783054 ----------------------------------------------------------------TTAAAATCTatcaaat--------tcctt-----------------------
i caePb3.Scfld02_62     I 8 C 0
e caeJap4.Scaffold16506    22611   0 +   115485 C
e cb4.chrX              20843514  13 - 21540570 I

a score=182.000000
s ce10.chrX              1481586 2 + 17718866 TT
s caeJap4.Scaffold16506    22611 2 +   115485 TT
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       457366 0 +   783054 C
e cb4.chrX              20843514 13 - 21540570 I
e caeSp111.Scaffold514     94767 0 +   141934 C
e caeRem4.Crem_Contig24   944142 0 -  1162296 C

a score=427830.000000
s ce10.chrX              1481588 474 + 17718866 TTTCAGACCGGAGGCACTGAGAGAGCTCCACCTTCGCCAGCAGCCAACGCCACTCCAACTGAGCACCCACTCACCACTGCCCAACAGAACAAACTGAAAAGCTTCCGTGGACTCTTCGAGGACGACACCAAGGCCATCATCTGGGGACAACAGGCTAAGGCTATTCAAGGAATGCTGGACTTTGACTATGTCTGCAGAAGAAGCTCCCCGTCGGTTGTCGCGTCCACCTACCCGTTCACTGGGGACAACAAGCAGAAGTACTACTTTGGGCAAAAGGAAATTCTCATTCCAGCCTATAAGTCGATGGCGAAGGCTTTTGCAACTCATCCGGATGCTTCTATCATGGTCACTTTTGCCTCGATGAGATCTGTATTTGAGACTGTTCTCGAGGCGCTCGAGTTCCCACAAATCAAGGTTATTGCGATCATTGCTGAAGGTGTCCCTGAGAATCAGACTAGAAAGCTGTTGAAGGT-------A
s cb4.chrX              20843527 474 - 21540570 tttcagacTGGAGGAACTGAACCAGCTCCACCTTCTCCTGCTCCAGCTCCTTCTTCTATTGCACACTCTACGATTACTGCTCAACAAAGTAAACTAAACAGTTTCCGTGGTCTGTTTGAAACTGATACCAAAGCAATTATCTGGGGCCAACAAGTCAAGGCGATACAGGGAATGCTGGATTTTGACTTTGTATGCAGAAGGGATTCTCCATCTGTCGTTGCTTCTACCTACCCATTCACCGGAGACAACAAGCAAAAGTTCTACTTTGGACAGAAAGAAATTCTTATCCCAGCTTATAAATCAATGGCAAAGGCTTTTGCAACGCATCCAGAAGCATCTATTATGATCACGTTTGCTTCAATGAGATCTGTATTTGAAACTGTTTTGGAGGCTCTCGAATTCCCGCAAATCAAAGTCATTGCAATTATTGCAGAAGGAGTACCAGAGAATCAAACAAGAAAACTATTAAAGGT-------A
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig24   944142 481 -  1162296 TTTCAGACCGGCGGAACCGAGCGTGCTCCATCATCCCCAGTACCAAGTCCAACTACAATTGAGAACCCACTCACCACTGCACAACAAAACAAGTTGAACAGCTTCCGTGGACTATTCGAGGATGATACCAAGGCTATTGTCTGGGGACAACAAGCCAAAGCTATCCAAGGAATGCTCGATTTCGATTATGTATGCAGAAGAAACTCTCCATCAGTTGTTGCCTCCACCTATCCATTCACTGGAGATAACAAGCAGAAGTACTACTTTGGACAGAAGGAAATCCTGATCCCAGCTTACAAATCGATGGCAAAGGCGTTTGCCACTCATCCAGAAGCTTCCGTGATGGTCACGTTTGCCTCCATGAGATCTGTCTTTGAGACTGTCTTGGAGGCTCTCGAGTTCCCACAAATTAAGGTTATTGCTATTATTGCTGAAGGAGTCCCAGAGAATCAGACAAGAAAACTATTGAAGGTTTgataaa
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     94767 468 +   141934 TTACAGACCGGAGGAACCGAACGTGCCCCGTCCTCTCCTGCTGCCGATAGCGCCCCAAAAGAGAATCCACTCATCTccacacaaaaaattccg------aGCTCCCGtggactttttgaaaatgacacTAAAGCTATCATCTGGGGACAACAGGCCAAGGCTATTCAAGGAATGCTGGATTTTGACTATGTGTGCAGAAGAAGCTCTCCGTCTGTTGTAGCATCCACTTATCCCTTTACCGGAGAtaacaaacaaaaatactACTTTgggcaaaaagaaattttgattccagCCTACAAGTCTATGGCGAAGGCTTTTGCTATGCACCCTGAAGTAACTGCCATGATAACATTTGCTTCAATGAGATCAGTTTTCGAAACTGTATTGGAAGCGCTCGAGTTTCCACAAATTAAAGTTATTGCAATTATTGCTGAAGGAGTTCCAGAGAATCAGACCAGGAAGCTTCTAAAGGT-------A
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       457366 474 +   783054 ttttaGACTGGAGGAACCGAACGTGCTCCATCCTCACCGGCTGTCAACTCTGTTCCAGCCGAACACCCACTCAGCACTGCTCAACAAAACCGACTCAACAGTTTCCGTGGCCTCTTCGAAGATGACACCAAAGCAATCATTTGGGGACAACAGGCTAAAGCTATTCAAGGAATGCTCGATTTTGATTATGTCTGCAGAAGAAGCTCTCCATCTGTTGTTGCATCTACCTATCCATTCACAGGAGACAACAAACAGAAGTATTACTTTGGACAGAAGGAAATTTTGATCCCAGCTTACAAATCTATGGCCAAGGCATTTGCTACTCACCCTGAAGCCACTGTTATGGTAACTTTCGCTTCAATGAGATCTGTCTTTGAGACCGTTCTGGAAGCCCTCGAATTCCCACAAATCAAAGTTATTGCTATCATTGCTGAAGGAGTTCCAGAGAATCAAACCAGAAAATTGTTGAAGGT-------A
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    22613 474 +   115485 ATTTAGACGGGAGGAACTGAAAGAGCACCATCCTCTCCTTCACCAAACACAGCTTCAGCTGGCCATCCACTCAGCGCTGCTCAACAGAACAGGCTCGCAGGCGCTCGCGGACTTTTTGAAGATGACACCAAGGCAATCATCTGGGGACAACAAGCCAAAGCAATTCAGGGAATGTTGGACTTTGACTACGTTTGCCGACGAAACTCTCCGTCTGTTGTGGCTTCGACTTATCCATTTACTGGAGACAACAAGCAGAAATATTATTTTGGACAGAAGGAGATTCTTATCCCCGCCTACAAGTCGATGGCGAAGGCATTTGCTACTCACCCGGAAGCCACTATCATGGTGACATTTGCTTCAATGAGATCTGTGTTTGAGACTGTTCTCGAGGCGTTGGAGTTTCCGCAAATTAAAGTTATTGCAATCATTGCCGAAGGAGTTCCAGAAAATCAGACACGAAAACTCTTGAaggt-------a
i caeJap4.Scaffold16506 C 0 I 1361

a score=-24272.000000
s ce10.chrX              1482062 50 + 17718866 AAG----------------TTT-TCCCCCACCG------------------GAAATAGAAGTATTCTGATTCT--AATTATGCTTGT
s cb4.chrX              20844001 31 - 21540570 TAT---------T------CGT-CTCATTAACA------------------------------GGCTATCATT--AGC--------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   944623 37 -  1162296 tgt---------tgaaaaactt-tgTATTATAA------------------------------TTTCCGTATA--AGT--------A
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     95235 38 +   141934 GAT---------TGATTGCTAT-TCGATTGTCA-CACTGaa------------------------ctaatatt--------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       457840 76 +   783054 AATGAAAATAGGTGATCAACATAGCAAATAACATCACTGAAATTTCCGAGAGAAATAAA---Gctctaaaattgaaat--------a
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    23087 1361 +   115485 I

a score=796635.000000
s ce10.chrX              1482112 815 + 17718866  
s cb4.chrX              20844032 813 - 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig24   944660 815 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 37
s caeSp111.Scaffold514     95273 815 +   141934  
i caeSp111.Scaffold514  C 0 I 102
s caePb3.Scfld02_62       457916 815 +   783054  
i caePb3.Scfld02_62     C 0 I 63
s caeJap4.Scaffold16506    24448 807 +   115485  
i caeJap4.Scaffold16506 I 1361 C 0

a score=0.000000
s ce10.chrX              1482927 35 + 17718866 AATTGAGACCTGTTTTCAGCACCACTAATAATACA
e caePb3.Scfld02_62       458731 63 +   783054 I
e caeJap4.Scaffold16506    25255  0 +   115485 C
e cb4.chrX              20844845 37 - 21540570 I
e caeSp111.Scaffold514     96088 102 +   141934 I
e caeRem4.Crem_Contig24   945475 37 -  1162296 I

a score=318341.000000
s ce10.chrX              1482962 312 + 17718866 TTTCAGAAGCGTCTCCCACCACATGCCAACAAATTTATCGAGATCTGCTTGATGCTCACCGCCGATCACGGACCAGCTGTGTCGGGAGCCCATAACACTATTGTGTGTGCTCGTGCTGGAAAAGATCTGATCTCTTCGCTCACGTCTGGTCTACTCACCATTGGTGATCGCTTCGGAGGTGCCCTCGATGGAGCCGCTCGTCAGTTCTCTGAGGCTTTTGATCAAGGATGGTCGGCGAATCAGTTTGTCAGCGAGATGAGAAAGAAGGGAAAGCATATTATGGGAATTGGACATCGTGTGAAGAGTGTAAGT
s cb4.chrX              20844882 312 - 21540570 TTTTAGAAACGTCTTCCACCACATGCCAACAGATTCATCGAGATTTGTTTGATGTTGACGGCCGATCATGGACCTGCTGTTTCCGGAGCTCACAACACAATAGTTTGTGCGCGTGCAGGCAAAGATTTGATCTCTTCACTTACATCTGGTCTGCTCACTATTGGAGATAGATTTGGAGGAGCTCTCGATGGAGCTGCtcgtcaattttcagaggCGTTTGATCAAGGATGGTCTGCCAATCAGTTTGTCAGTGAAATgagaaagaaaggaaaacaCATTATGGGAATTGGACATCGTGTAAAGAGTGTAAGT
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig24   945512 312 -  1162296 TTCCAGAAACGTCTCCCACCACACGCCAACAAGTTTATTGAGATTTGCTTGATGCTCACTGCTGACCACGGACCAGCTGTTTCCGGAGCTCACAACACCATTGTGTGCGCTCGCGCCGGAAAAGATTTGATCTCCTCCCTCACCTCTGGACTCTTGACCATCGGAGACAGATTTGGTGGTGCGCTTGATGGAGCTGCTCGCCAATTCTCAGAAGCATTTGACCAAGGGTGGTCTGCCCACCAGTTTGTCAGTGAGATgagaaagaagggaaaacATATTATGGGAATTGGGCATCGTGTCAAGAGTGTAAGT
i caeRem4.Crem_Contig24 I 37 C 0
s caeSp111.Scaffold514     96190 312 +   141934 TTTTAGAAACGCCTGCCACCTCATGCAAACAAATTTATTGAGATATGTTTGATGCTCACTGCTGACCATGGTCCAGCTGTATCTGGAGCCCATAACACAATCGTGTGTGCCCGCGCAGGAAAGGATTTGATTTCATCTCTCACATCAGGACTTCTTACTATCGGTGACAGGTTTGGTGGTGCACTTGATGGAGCTGCCCGTCAATTCTCTGAAGCGTTTGATCAAGGTTGGTCTGCCAATCAATTTGTCAGCGAGATGAGAAAGAAGGGAAAGCACATTATGGGAATAGGGCATCGTGTCAAGAGTGTAAGT
i caeSp111.Scaffold514  I 102 C 0
s caePb3.Scfld02_62       458794 312 +   783054 ttccagaagcGTCTCCCACCACATGCCAATaagttcattgaaatttgtttaATGCTTACCGCTGATCACGGACCAGCTGTCTCCGGAGCTCACAACACCATTGTTTGTGCTCGTGCAGGCAAAGATTTGATTTCATCTCTTACCTCCGGACTTCTGACAATTGGAGATAGATTTGGAGGTGCTTTGGATGGAGCGGCTCGTCAATTCTCTGAAGCTTTTGATCAAGGATGGTCAGCTAACCAATTTGTTAGCGAGATGAGAAAGAAGGGAAAACATATTATGGGAATTGGACATCGTGTGAAAAGTgtgagt
i caePb3.Scfld02_62     I 63 C 0
s caeJap4.Scaffold16506    25255 309 +   115485 ---CAAAAGCGTCTTCCGCCACACGCCAACAAGTTTATTGAGATTTGCCTTATGCTCACTGCGGATCATGGACCAGCTGTTTCTGGAGCTCACAATACTATTGTCTGTGCTCGCGCTGGAAAAGATTTGATTTCTTCCTTGACTTCTGGGCTGTTGACTATTGGAGACCGTTTTGGAGGTGCTTTGGATGGAGCTGCTCGTCAATTCTCGGACGCTTTTGATCAAGGATGGTCGCCAAACCAATTTGTTGGAGAAATGAGAAAGAAGGGAAAGCATATTATGGGAATTGGTCATCGAGTCAAGAGTGTAAGT
i caeJap4.Scaffold16506 C 0 I 29

a score=-258.000000
s ce10.chrX              1483274 1 + 17718866 G
s cb4.chrX              20845194 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   945824 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     96502 1 +   141934 G
i caeSp111.Scaffold514  C 0 I 30
s caePb3.Scfld02_62       459106 1 +   783054 g
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25564 29 +   115485 I

a score=-1006.000000
s ce10.chrX              1483275 4 + 17718866 TAGA-
s cb4.chrX              20845195 4 - 21540570 TCTA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   945825 4 -  1162296 TAGA-
i caeRem4.Crem_Contig24 C 0 I 32
s caePb3.Scfld02_62       459107 2 +   783054 ---aa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I

a score=693.000000
s ce10.chrX              1483279 11 + 17718866 GACTAAAATGG
s cb4.chrX              20845199 11 - 21540570 GGATAATTTAG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       459109 11 +   783054 aaatgagatgg
i caePb3.Scfld02_62     C 0 I 48
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I
e caeRem4.Crem_Contig24   945829 32 -  1162296 I

a score=91.000000
s ce10.chrX              1483290 1 + 17718866 T
s cb4.chrX              20845210 1 - 21540570 T
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       459120 48 +   783054 I
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I
e caeRem4.Crem_Contig24   945829 32 -  1162296 I

a score=0.000000
s ce10.chrX              1483291 374 + 17718866 TTTGAGTACCCTTACAAATGTCTCACTGTAGTTACTGTAGTAGTGTACTACAGTGATTCATTTTAGAAACATAGTGTCCCATCTCGGTTTGATCTCTGAGAATTGCGGGAACAACGTGCCCAGGAAATTTTACCATTacgtggtgtcaagttgtcttgatctacaaaacatgcggaaaatttgggtccaaaaaaaatgtgacgtcagcacgtttttctcaactcccgcattttttgtagatctacgtagatcaaactaaaatgggacactctgacGTGTACCATCAAACCGAGACGTGATACTCTGACACCCACCAAGTGTCAGTATTGTCAGAATTAGCGTAATCCAAGTCGGTACTCTAAATAGAACGTCTA
e caePb3.Scfld02_62       459120  48 +   783054 I
e caeJap4.Scaffold16506    25564  29 +   115485 I
e cb4.chrX              20845211   0 - 21540570 C
e caeSp111.Scaffold514     96503  30 +   141934 I
e caeRem4.Crem_Contig24   945829  32 -  1162296 I

a score=33.000000
s ce10.chrX              1483665 22 + 17718866 ATACCGAAGAGCTCAAATATTG
s cb4.chrX              20845211 18 - 21540570 ATGACAATAATCTCAAGT----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       459120 48 +   783054 I
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I
e caeRem4.Crem_Contig24   945829 32 -  1162296 I

a score=273.000000
s ce10.chrX              1483687 1 + 17718866 T
s cb4.chrX              20845229 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       459168 1 +   783054 t
i caePb3.Scfld02_62     I 48 C 0
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I
e caeRem4.Crem_Contig24   945829 32 -  1162296 I

a score=600.000000
s ce10.chrX              1483688 1 + 17718866 C
s cb4.chrX              20845230 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   945861 1 -  1162296 c
i caeRem4.Crem_Contig24 I 32 C 0
s caePb3.Scfld02_62       459169 1 +   783054 c
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25564 29 +   115485 I
e caeSp111.Scaffold514     96503 30 +   141934 I

a score=536.000000
s ce10.chrX              1483689 2 + 17718866 AA
s cb4.chrX              20845231 2 - 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   945862 2 -  1162296 aa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       459170 2 +   783054 at
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    25593 2 +   115485 aa
i caeJap4.Scaffold16506 I 29 C 0
e caeSp111.Scaffold514     96503 30 +   141934 I

a score=361340.000000
s ce10.chrX              1483691 391 + 17718866 TTTCCAGATCAACAACCCTGACAAACGTGTGGAGATTCTGAAAAGATTTGCCATGGACAAGAAGGAGTTTGCCCAGGAGACGCCGTTGTTCGAGTATGCTCTTGAGGTCGAGAAGATCACGACCGCCAAAAAACCGAACCTCATTCTCAACGTGGACGGAGCGATTGCGATCTTATTCGTCGATATCCTTCGCCACAGTGGCATGTTCACCAAGCAGGAGGCCGAGGAGACAATCGAGATTGGATCGCTCAATGGGCTTTTCGTTTTGGGTAGATCTATTGGATTTATCGGTCACTACTTGGATCAGTCGCGTCTGAAGCAGGGATTGTACCGTCATCCATGGGATGATATTTCCTACATTATGCCGGAGAGCAACTTGGTAAAGTTTTGA-
s cb4.chrX              20845233 391 - 21540570 TTTATAGATTAACAACCCCGACAAACGagttgaaattctcaaaaagtttgCGATGGACAAAAATGAGTTCGCCCAAGAGACTCCACTATTTGAATATGCTCTCGAAGTCGAAAAGATCACAACTGCGAAGAAGCCAAACTTAATTTTGAATGTTGATGGTGCAATTGCAATTTTGTTCGTAGATATTCTCCGTCACAGTGGAATGTTCACCAAAGCGGAAGCCGAAGAGACCATCGAAGTGGGATCGTTGAACGGGCTTTTCGTTTTGGGAAGATCCATTGGCTTCATCGGTCATTATCTCGATCAGTCTCGTCTGAAACAAGGTCTCTACCGCCATCCATGGGATGATATTTCCTACATCATGCCAGAAAGTAACTTGGTGAGCTACTGA-
i cb4.chrX              C 0 I 279
s caeRem4.Crem_Contig24   945864 391 -  1162296 ttttcagattaacaACCCTGACAAGCgtgttgaaattttgaaacgcTTTGCAATGGACAAGAAAGAGTTCGCTCAAGAGacaccactttttgagtacGCGTTGGAAGTCGAGAAGATCACCACTGCTAAAAAACCAAATCTAATCCTCAATGTCGATGGAGCGATTGCGATCTTGTTTGTCGATATCCTCCGCCACAGCGGAATGTTCACCAAGGCGGAAGCCGAGGAGACCATTGAGATCGGATCTTTGAATGGACTTTTTGTGTTGGGCAGATCTATTGGATTTATCGGTCACTATCTTGATCAATCTCGTCTCAAGCAAGGTCTCTACCGCCATCCATGGGATGATATCTCCTACATCATGCCAGAGAGCAACTTGGTAAGTTATTTG-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     96533 388 +   141934 TTTACAGATCAATAACCCAGATAAGCGTGTtgaaatcctgaaaaaattcgcAATGGATAAATTAGAATTTGCTCAGGAGACTCCAATTTTCGAATACGCTCtggaagttgaaaaaatcacGACTGCAAAAAAGCCGAACCTTATCCTGAATGTTGATGGCGCAATTGCTATCTTGTTTGTGGATATTCTTCGTCACAGTGGAATGTTTACTAAACAAGAAGCTGAAGAGACTATCGAAATTGGATCGTTGAATGGGCTTTTCGTATTAGGTAGATCTATTGGGTTCATCGGTCACTATTTAGATCAATCTCGTTTGAAACAAGGATTGTACCGTCACCCGTGGGACGATATCTCGTATATTATGCCAGAAAGCAATTTGGTAAGTTTG----
i caeSp111.Scaffold514  I 30 C 0
s caePb3.Scfld02_62       459172 389 +   783054 ttttcagatcaacaaTCCTGACAAGCGCGTTGAGATCCTTAAAAGATTTGCTATGGATAAGAAGGAGTTCGCCCAGGAAACCCCTCTGTTTGAGTACGCCTTGGAAGTTGAGAAGATCACAACTGCCAAAAAACCTAACttgattttgaatgttgatGGAGCAATTGCAATCCTTTTTGTGGATATCCTCCGTCACAGTGGAATGTTCACAAAGCAAGAAGCCGAGGAAACTATTGAAATCGGATCTTTGAATGGACTCTTTGTTTTGGGAAGATCAATTGGATTCATTGGACACTACCTTGACCAGTCTCGTCTCAAGCAAGGATTGTACCGCCATCCATGGGATGACATTTCGTACATCATGCCAGAGAGCAACTTGGTATGTTCAT---
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    25595 392 +   115485 tttacagATCAACAATCCAGACAAACGAGTTGAGATTCTGAAGAAATTTGCGATGAACAAGGCGGAATTTGCCCAAGAAACACCTCTATTTGAGTACGCTCTTGAAGTTGAGAAGATCACTACCGCCAAAAAGCCAAACCTCATCCTCAACGTTGACGGCGCGATTGCCATCTTATTTGTTGATATTCTACGCCACAGTGGTATGTTCACGTCACAGGAAGCGGCAGAAACAATTGAGATTGGCTCACTTAATGGACTATTTGTCTTGGGTCGATCTATTGGATTTATCGGACATTATCTTGACCAATCTCGACTTAAACAAGGATTGTATCGCCATCCGTGGGATGACATTTCGTACATTATGCCGGAAAGCAATTTGGTGAGAATTCTGA
i caeJap4.Scaffold16506 C 0 C 0

a score=242.000000
s ce10.chrX              1484082 4 + 17718866 ATAT
s caeJap4.Scaffold16506    25987 4 +   115485 GTAT
i caeJap4.Scaffold16506 C 0 I 3630
e caePb3.Scfld02_62       459561 0 +   783054 C
e cb4.chrX              20845624 279 - 21540570 I
e caeSp111.Scaffold514     96921 0 +   141934 C
e caeRem4.Crem_Contig24   946255 0 -  1162296 C

a score=-5029.000000
s ce10.chrX              1484086 157 + 17718866 AAATTGCTTAAGGTTTTACGCACTGACCAAGTTTCAAAAAAATTCATA-TCTAATTTCAATGATAATTATGAACAAT--TTTCAGTAAATTCCGCAACCCTTCAACAT---------------TCTCCTGG-ACCAAGCAACTGAAGCATTCCA-ATTTTTTCTAATCACTGTACCC-----------------
s caeRem4.Crem_Contig24   946255 140 -  1162296 ---------AAGGGGTTTC-------------TTTATTGAGAT------GGTAGATTTCTcgataa--aaaagttttcatttcagtaAA---TCTACCACGACCAACTC--------------TCTACTGG-ACCAAACAACTGaatcattcca-attttt-----cttttaatctGACAAGAGAAATATGCAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     96921 101 +   141934 ----------------------------------TATAAAAGCGAGt--gttaatttttgt------------tttt--tttcagtaat---cggatttcttcaaa-----------------tcttctggaataaaataattaaacaattcca-cttttt-----tcactgCACTC-----------------
i caeSp111.Scaffold514  C 0 I 86
s caePb3.Scfld02_62       459561 127 +   783054 ----------------------------------TACAAATATAATTACACTGAAACTCAT--------aaagttat--tttcagtaaTACCCTGAATCCATCCAACTTTACACCGATTAATCTCTTCTGG-ACCAAACAACTGAATCATTCCaccttttt-----tcatgaaactc-----------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20845624 279 - 21540570 I

a score=336.000000
s ce10.chrX              1484243 194 + 17718866 -----------------TAAAAGTCCCCTATCTCCCC---------CCAACCAAGCAATAATTTCACAAGGTTTTTTTTCTC-------AACTTGTTCATTAATTTATTTCCCGTACTCTACTCTCAACTTTAATATTGCACCCCATGAGCTTTACT-----------TTTTAGCTTACAAA-----AATGTATTTTT--CTTGAATTTGATGATATTTATTCAGCTTAG----ACAATAAAGCATGGT
s caeRem4.Crem_Contig24   946395 213 -  1162296 --------------TTTCCGTAGTCCATTCCCTCCCCTGATTTTGTCTCTCACAGCAAtaagtttctaatttttatattcttcttTGAGAAtttattcacaatttttatattcCTGCTA-Actttaaacttgaaaa---------atgagctttACAGATGTTTTCGAT-GTAGCTTCTAGCTTCTTCACTCACAGTT--ATTAATTTATTCAGTATAGATTCTG---------ATAATAAAGTGTGGT
i caeRem4.Crem_Contig24 C 0 I 4
s caePb3.Scfld02_62       459688 181 +   783054 caaaaaagatGTATTTTCCGTAGTCCATTCC---------------TTCTCGaagcaataatttttgatgcattgtattatt---------tttatttacagATGTAA-----------------AAACTTG-------------ATGAGCTTTACG--------CAATGGTAGCTTCTAG------TATTCAGCGtttaattaatttattttacaTTTATTTTGCTTTTCATTAGAATAAAgtacagt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20845624 279 - 21540570 I
e caeSp111.Scaffold514     97022  86 +   141934 I

a score=-1905.000000
s ce10.chrX              1484437 434 + 17718866 ---ATAGTATGGAATTTTCTGGAACTTAAGAAATGCTAAGCCAAAAAAATTTAGCACGGGCCTTTTTTTTTAGCTTTCTTTTGTGTTCAAAAACTTATATAACTA-AAAAAAGGTTTAAAATA--------CAGGTTTTTACCCAAAAATTTCGGCCGAAATATGTATTTTTAGATTGTTTTAATGAAAAAAAAACTCTTATTTTTTAAATGAAAAAACCATCTCAATCGCAATTTCTTGAGTTTTGAACCTAGTACAAAAATGAACCGAAACACTTTCCAACGGTAATTTTAGGGGTTCAGAGCTGAATTCTGTCCCTGAAATTTTTGTGGTGACCTAGTCTTAACATAGGCCTTAAACAGGCCTCATCTGGAAATTGGATTTTCAGGCTTAAAAATTATGGAAAGGTTTAAACGAGAGGCTCTGAAAATTGACTTTTTATTTTG
s caePb3.Scfld02_62       459869 369 +   783054 tgaaaaaaagagagttttt-----cACAAAGCACGTTGTTTCGATAACATCgaa---------tttttgttggtgtaGGTTTTCATCAAACGA--TAGACAACAATAAGAAAGCAATATAATAATCTTGGTaaggtttttttgcaaaaaattc-----aaaaaggta--------------tgatgaaaaaaaaggaactttCTCAAACTTGACGATGTcagttc--ttctgattttttaattccTAAAACCATTCCAAATTCGGAAC---ATATttaacgaaaaaaacttt----gttc--aaCTGCTTTCT-CGTCTAAAGTTCAGGTTCTGTCACATTATC-ACATAGAATTCCACAAAGTGTGACTTGAA----------TCAGTCT------TTTTATTAGGATCTCAACG-------CAGCAAATAAA------AGGTTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20845624 279 - 21540570 I
e caeSp111.Scaffold514     97022  86 +   141934 I
e caeRem4.Crem_Contig24   946608   4 -  1162296 I

a score=410.000000
s ce10.chrX              1484871 8 + 17718866 TCaatttt
s caeSp111.Scaffold514     97108 8 +   141934 TCcatttc
i caeSp111.Scaffold514  I 86 C 0
e caePb3.Scfld02_62       460238 0 +   783054 C
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20845624 279 - 21540570 I
e caeRem4.Crem_Contig24   946608 4 -  1162296 I

a score=-1770.000000
s ce10.chrX              1484879 33 + 17718866 ttattatttaaattttCAA-AATAGGAAAAAGAA--
s cb4.chrX              20845903 36 - 21540570 TTATTATTTCATCTCCAAATAATACAAAATTAAGAG
i cb4.chrX              I 279 C 0
s caeSp111.Scaffold514     97116 33 +   141934 ttatttatttgattatgaa-agtAGATAATAAAG--
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       460238 15 +   783054 ------------CCATCAA-AAT------CACAG--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeRem4.Crem_Contig24   946608  4 -  1162296 I

a score=24847.000000
s ce10.chrX              1484912 399 + 17718866 CATGCAAAAAACATATAT---TGCTGAAAAAGTAGTAAAGCTCTGTCC------TGATAAATTGCAGAAATCGTAATTACAGCAACACGCTTTAACATCAACATCACCAAGCTTTTCCTTTTGACAGCTCACTCCGTTGGTCTGAAACTTATTATATTTTTTGTAGACCTCTCAGCAGTTT------------------------------------------------------------TGAAAACGCTTTTGGCTTGAATTTTTACTAAAGTTAGCTAAGATCAAATGAGCAA---------------------------------------AATTACTTAACCAACGCTGAACACATTTGAAAACTCAAAATAATATGTGCTATTAAAAACTTACATCACAATTTGTAATAGACACTGTCGGATCGGGACACGTTCCATTGAACACTGTGAAATAAGATGCTTGCTCAGAAAGCGTCAAACAATAAAGGCCATTGCAGGTGAT
s cb4.chrX              20845939 474 - 21540570 AATAAAAAACGAATAAACATGTAATGAAGTGACGGT------------------TGAAGAATTACATAATTCAGTATTGCAACAACAAACTTTCACATGGACTCCACTGATCTTCTCTTTTTGACAACCGACCccattattctgaaaa-----aaatttttttgagataaaatagtaattttgctctgaaaaaaatcaacttgagATAAGGagtttaaaattattattttaagTTCCGgcaagaaaacaatttt-tcataagAATTTAGGAAATCTCACT----ATGAATATCCTAATGTCATAAAACCGGAAGAAAGGGATGTTTCGCATTTCGAATTACATtatgaaactcaaaaaaatggagCATGTTTTATTC-----TTCATTTAACAACCAACCTCACAGTTTGTTATAGAAGCAGATGGGTCTGGACACGTTCCATTGTAAACTGTGAAATCACTACCTTCCTCCGATATGGTCATGCAGTATGATCCCGGGCACATTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   946612 279 -  1162296 AACAAAACCGACATAAAC---TGA-GAAATAATACT------------------GGAGGTATTGCACAAGTCAGAGTTGCAGCAACACACTTTGACATAGACTCCGCCAATGGTTTCCTTCTGACATCCGACtccatttgtctgaaaa-----aaatgtt-------gaaactaGT-----------------------------------------------------------------AGAAAACAA----------------------------------------------------------------------------CGCA-----AATT---------------------------ATGTCTAAAT---------------------ACCTGGCAATCTGTGATTTTTACGGACGCATCTGGGCAAGTTCCATTATAAACATTGAAGTCACTACCTTGCTCAGAAAGTGTCATGCAGTAGTCTCCAGGACAAGTCAT
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold514     97149 279 +   141934 -----TATGgtaataaaa-------aagatgatgatcAGGttggaataagaaaaagacgTATTGCACAAATCGTAGTTGCAACAGCACACTTTGATGTAAGTAtcgccaattttttctttttggcaTCCAACTCCGTTTTTCT---------------------------AATAATAAAgt-----------------------------------------------------------------------------------------------------------gttttcaa------------------------------------------------------------tgaatacGAGACCTTT----------------------CAAACCTCGCAGTCCATTATAGGAACTGACGGATCCGGACATGTTCCATTATAAACGTTAAAATTATCTCCTTGTTCAGACAGCGTCAGGCAAAAATTTCCATTGCATGTCAT
i caeSp111.Scaffold514  C 0 I 622
s caePb3.Scfld02_62       460253 318 +   783054 -----AAAGAACATAAAA-------AGTAGTACG--------------------AGAGGTATTGCACAAGTCATAATTACAACAGCACACTTTTATATATGTAGTgccaattttctcgttttgacATCCGACTCCGTTGctctg---------aagttcc-------aaaaatggtAAAATTACTAGGAG---------------------------------------------------TGAAAGcaa----------------------------------gtaaattttcaaatatgc------------------------tGCT-----AATT-----------TTTGGTTGGTAACGCCAACTTTAAAT----------------GACGAACCTCGCAATCTGTGATTGCCACAGATTTATCCGGGCATGTTCCATTATAAACATTGAAATCACTCCCTTGCTCGGATAACGTCATACAGTAATTGCCAGTACATGTCAT
i caePb3.Scfld02_62     C 0 I 2433
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=856.000000
s ce10.chrX              1485311 14 + 17718866 AGCTGTCTGAAATT
s cb4.chrX              20846413 14 - 21540570 TTGCGactgaaatt
i cb4.chrX              C 0 I 419
s caeRem4.Crem_Contig24   946891 14 -  1162296 CTTTACCTAAAACT
i caeRem4.Crem_Contig24 C 0 I 1060
e caePb3.Scfld02_62       460571 2433 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=0.000000
s ce10.chrX              1485325 950 + 17718866  
e caePb3.Scfld02_62       460571 2433 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20846427 419 - 21540570 I
e caeSp111.Scaffold514     97428 622 +   141934 I
e caeRem4.Crem_Contig24   946905 1060 -  1162296 I

a score=4258.000000
s ce10.chrX              1486275 156 + 17718866 TCACACTATCA---------TCGGGTGATTCCGAGCTGTTCCCAATTCTCAAGTTTACAACTCCCGAAAACTTCACAAGTCACTAATCACACATCACTAGGTTCCTCCGAGGTCAAACTTTTCCC------------------GTTGGAAAAGA--GACAATTGAAGAGTGAGAGGTTGCATGAC
s caeRem4.Crem_Contig24   947965 175 -  1162296 TCATGCTATCAATAAAACAATCGGGTGATTCTGAAAC-TTATCAA----CAGATCCACAACTCCCGAATACTTCACAAGTCAAATATCACAGATCACT-----CCTCCCTCTTCAAATGTCTCCTTCCAATACACAACTGTCGGATGGGAAGGAAAGACTAGTGGAATGCGAGAGAGTGCATGAC
i caeRem4.Crem_Contig24 I 1060 C 0
e caePb3.Scfld02_62       460571 2433 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20846427 419 - 21540570 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=44.000000
s ce10.chrX              1486431 56 + 17718866 -------------------------GTCATAGACAAACGTCCAAGTGTCTGTG-ACCTCTCATTTGCATGTACTGTCTTGTC
s cb4.chrX              20846846 57 - 21540570 -------------------------GTGATACACACACGTCCTTGTGTCTTTGCACCACCTTTACTCGCAAACTATTTCGTT
i cb4.chrX              I 419 C 0
s caeRem4.Crem_Contig24   948140 75 -  1162296 GTCACAGAAAGGTCGCACAAAGGGAGAGAGTAACACACGTGTATA-------GCGCATCCTCAACGTGTATACTATCTCGCC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       460571 2433 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=12200.000000
s ce10.chrX              1486487 137 + 17718866 GGGGAAGGTATATATTGATCATCTAGCGTTTGAAACAGCGC-----ACCAGTGTCTCTGTAGTTTGGGCAAC--------GAGCAGTCGG----TAATTATGAGTGCTTTGCTGGGAGGACGAATTGCTGTGGTTACCGGTGAGTTG--------TTTTATT
s cb4.chrX              20846903 138 - 21540570 --GGAAGGTATATATTGACCTCCGACAGCAACGAATAGTTCAACTGTCAAGAATACCTGCTCTTGCTACTAT--------CGgtcact------gaaaaatgagtgCGCTACTTGGAGGAAGAATTGCTGTAGTTACTGGTAATCTT--------TCCTGTT
i cb4.chrX              C 0 I 68
s caeRem4.Crem_Contig24   948215 159 -  1162296 --ACTAGGTATATATTGATCATCTTCGGTCGCAAAGAGGGCAGTT-TCTAGGTTCACGACATTCGGTGCAACATTTTCCGAGGCCAttaagaacaaaaaatgagtgcTCTTCTTGCTGGCAGAATTGCAGTTGTTACTGGTGAGtttttgataggttttgat
i caeRem4.Crem_Contig24 C 0 I 9
s caePb3.Scfld02_62       463004 123 +   783054 ggaTAACGTATATATTGGTCTTCAGAGGTGCAGAAAAAAGCAACT-TTT----------CAATTGTATTTAT--------AGA-----------CGAGAATGAGTGCTTTGCTGAGAGGAAGAATTGCTGTTGTTACTGGTGAGTA---------TTTTATT
i caePb3.Scfld02_62     I 2433 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=-2270.000000
s ce10.chrX              1486624 92 + 17718866 TGCAAAAAATTATTTTGAAAAAAAAATTGCAAACACCTAATTTAATATAT-------TTTTCAAGTTTAAAATAGAA----GGAAAAAAAAATTTTTTGGAAA--
s caeRem4.Crem_Contig24   948383 99 -  1162296 tgcgcaaaagtgtttttgaaatatttttccaa----cTACATTAATGCACATCTT--TTCACGGTTTTaccataaaatttgaaaaaaataacatttttctcaatc
i caeRem4.Crem_Contig24 I 9 C 0
s caePb3.Scfld02_62       463127 99 +   783054 --CACAAACAT-TGAgtgaaatatcagaaaaaaactcggaaCTGATACTTATCGGAATTCAGAATATTGTTTTGTACGct-aaaaaaataagtttcatgaaaa--
i caePb3.Scfld02_62     C 0 I 9
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847041 68 - 21540570 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=-1291.000000
s ce10.chrX              1486716 190 + 17718866 AAAAATTAGCAAAAATTAAAAAAAATTGTAGTGATTTTGAGAATTAAAAATAAAAAAATTGAGCAAATATCGTTTCGTGAGTTAAATAAAAGAAGTAAAATATGAGTTGACATTGAAGTTGGTCAGTGCATTTCACACGTTTAGTCAGTGCATTTGGTCCGTAAAA----AGCAAAAAAC----ATACCAAGTGCACT
s caeRem4.Crem_Contig24   948482 133 -  1162296 taACCATAGCCACAA--------AGCTGTATTGTATATAGGAATCGAGA-----------------------------TAATTGACCAGAAGAACCGAAAAACGGTTTGACTAT--------------CATtaaacat--------------tctgaaacataaaataatAGTTATAAATGCGAATGTTAATTGTATT
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       463226   9 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847041  68 - 21540570 I
e caeSp111.Scaffold514     97428 622 +   141934 I

a score=-13416.000000
s ce10.chrX              1486906 273 + 17718866 GACCACCTGACTAGATCAAACCGAAACCCCCAGAAA--TTACTCTCACAAAAAACCTGCTCACTTCCAGCTTTTTGCAACATGAAACGTACTCGAAAGTCACATTTTTTCTGTAGTCCTGAGAAAAAACGTTAATAAAAAATGTTTTTATTCTCATAATCCAAGAAAAAATGAATGTTAAAGTG-------------------TGGGAAATAGAATACGGTAGCTTACGC----------TATATGTATATTTATAGCGTTTTTCAGAACTCACAATGTAAAAAGAG---CAAAAACCAAAAAGAGC
s caeRem4.Crem_Contig24   948615 144 -  1162296 -------------------agtagaaaaaacaaaaaacaagctCTTTCATTTGCAC--------------------CTAGCCAATAC----------GCTGTATCG-------------------------------------------TTTTTAGAAATCGAGATATATGAACGCCAAAAATT--------------------------AGACTTTCGGTCGTTTTTTG-----------------GCATTcattgaac--------------attttgagacaaa---caaaca-----------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     98050 263 +   141934 GACCACCTGACGTCAGAGAAACGAAACATACGCAAAACTAACACTTTCAAGTGTCTCTGTCTCTCCCGTCCTTATACTATCTTATAC----------TATATATTGATCACTTgg----gtgaaaaaa-------aagacacaT-----TTTTCTGCATTCAAGAAAATCTATAGTCCATAATTAAAATATGAGTGTGTTGCTTGGAGGAAGGATTGCGGTTGTTACTGGTTAGTTCAGCTCCGTATGTatatatataatttttta--------attttcaaattaatcgTGAACAT----------
i caeSp111.Scaffold514  I 622 C 0
e caePb3.Scfld02_62       463226   9 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847041  68 - 21540570 I

a score=418.000000
s ce10.chrX              1487179 3 + 17718866 CAA
s caeSp111.Scaffold514     98313 3 +   141934 CTA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       463235 3 +   783054 CAA
i caePb3.Scfld02_62     I 9 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847041 68 - 21540570 I
e caeRem4.Crem_Contig24   948759 0 -  1162296 C

a score=105264.000000
s ce10.chrX              1487182 250 + 17718866 TTTTCAGGTGGTGCATCCGGCATCGGCAAGGCCATCTCGCAGACGTTGGCCAAGCATGGAGCTCGTGTCGTAGTTGCCGATTTGGATTCCGGCAACGCTGCAGCCACTGCAAAGGCTCTTCCAG---CTAGCCAGAGCCATTCCTCGTTTGCCTGTGACGTGTCAAATGCAGACAGTGTGAAGGGGCTCAGTGAGCATGTAAAATCGCTGGGAACACCGTCGATTTTGGTAAATTGTGCAGGGATCACAAAGG
s cb4.chrX              20847109 250 - 21540570 TTTACAGGCGGCGGATCCGGCATTGGCAAAGCAATTTCTGAAGCACTCGCCAAACACGGAGCTCGTGTCGTTGTTGCTGATCTAGATTCTAACACAGCAGCCGCAACAGCAAAAAGTCTGCAAT---CCGCCGAAAAACATTCTTCATTTGCCGTCGATGTATCAGACGCAAATAGTGTGAAACAATTAACTCATCATGTTAAATCACTTGGAACAACCTCGATTCTTGTTAACTGCGCCGGAATCACAAAGG
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig24   948759 253 -  1162296 ttttcaggtgGAGGAGCAGGAATTGGAAAGTCTATCTGCCAGACATTGGCTAATCATGGAGCACGAGTAGTTGTTGCTGATTGGAACGTTGATACTGCCGCTGCTACTGCCAAAGATCTACCGTCAACCTCTGCAAAACACTCTTCATGCTTTGTCGATGTGGCAGATGTGGACAGTGTGCAAAAACTCAGAGACCACGTGAAGACAATTGGAACATCGTCGATTCTTGTCAATTGTGCCGGTGTTACTAGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     98316 249 +   141934 TTTTCAGGTGGAGGATCTGGAATAGGAAAAGCAATTTCTCAAACACTCGCCAAACACGGCGCACGTGTAGTTGTTGCAGATTTAGACGCCAATGCTGCTGCTGCTACAGCCAAAGTTTTGCCAT---CCTCCgaaaatcattcttt-ttcggtGTAGACGTGTCAAATGCTGATAGCGTCAAAGGGCTAGGCGAACATGTAAAATCATTAGGCACTCCATCTATTCTAGTAAATTGTGCGGGAATCACCAAGG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       463238 250 +   783054 CTTACAGGTGGAGGATCGGGAATTGGAAAATCTATTGCCCAGACTCTTGCCAAGCACGGAGCACGAGTAATTGTTGCTGATCTAGACTCAAGTACTGCTTCTTCTACTGCTAAAGCTTTACCAT---TATCCGAGAACCATTCTTCATTTGCTGTTGATGTGTCGAATTTGGACAGTGGGAAGAGACTCAGCGAACATGTCAGATCTCTTGGAACTCCTTCTATTTTGGTGAACTGTGCTGGTATTGCCATAG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=-1306.000000
s ce10.chrX              1487432 4 + 17718866 --TTCG
s cb4.chrX              20847359 4 - 21540570 --TTTG
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig24   949012 4 -  1162296 --TGAG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       463488 4 +   783054 TCTC--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98565 0 +   141934 C

a score=-6416.000000
s ce10.chrX              1487436 69 + 17718866 GTTTTTTTACAAATTCATCCTAAATC-------GTACACCTACAGTA--------------------ATCCTTTGTTACTAAAAAGGTGCTGTTGG
s caeRem4.Crem_Contig24   949016 91 -  1162296 -TTCTTTTTAAAGTTTGTCAAATGTCAAAATGTGAACACCtatcaaaaattactgaaatatGAAACAATTCTTT----TCATGAAGGTCCTCATAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       463492  5 +   783054 -------------------------------------------------------------------ATTTT------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847363 42 - 21540570 I
e caeSp111.Scaffold514     98565  0 +   141934 C

a score=1452.000000
s ce10.chrX              1487505 9 + 17718866 AGTCAAAAT
s cb4.chrX              20847405 9 - 21540570 AGACAAAAT
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig24   949107 9 -  1162296 AGTTAATAT
i caeRem4.Crem_Contig24 C 0 I 29
s caePb3.Scfld02_62       463497 5 +   783054 ----GAAGT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98565 0 +   141934 C

a score=-1959.000000
s ce10.chrX              1487514 38 + 17718866 ATGTGTCTAGCGAACTAAAGAAACAAAAATTTTTTTAA
s cb4.chrX              20847414 30 - 21540570 ------ATCATATTCTAATGAAATCATTATGATTTC--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       463502 29 +   783054 ------ATGGCAGTATGGCTAACTAACGCTTTTTC---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98565  0 +   141934 C
e caeRem4.Crem_Contig24   949116 29 -  1162296 I

a score=1746.000000
s ce10.chrX              1487552 3 + 17718866 AGG
s cb4.chrX              20847444 3 - 21540570 AGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   949145 3 -  1162296 agg
i caeRem4.Crem_Contig24 I 29 C 0
s caePb3.Scfld02_62       463531 3 +   783054 AGG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98565 0 +   141934 C

a score=45660.000000
s ce10.chrX              1487555 85 + 17718866 ATTCTACACTTCTAAAAATGAAGCAGGAGCAATGGGACAGTGTCATTAAGGTCAACCTTACCGGAGTCTTCCATGTGAGTTTTTT
s cb4.chrX              20847447 85 - 21540570 ACTCGACTTTGGCTAAAATGACTGAAGAGAAATGGGACAGCGTTATCAAAGTTAATCTCACCGGAGTATTCCATGTAAGTTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   949148 85 -  1162296 actCGACTCTTGTCAAAATGACTCAAGACAACTGGGACAGCGTCATTAAAGTTAATCTCAATGGAGTTTTCCATGTAAGttattt
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     98565 79 +   141934 ATTCAACTCTTCTAAAAATGACACAAGATAAATGGGATAGCGTGATCAAAGTTAATCTTACCGGAGTTTATCATGTAAG------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       463534 85 +   783054 ACTCTACTCTGTTGAAAATGAGCCAAGATAAGTGGGACAGTGTCATTAAAGTTAATCTAACTGGAGTTTTTAATGTGAGTTGTTT
i caePb3.Scfld02_62     C 0 I 19
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=-20386.000000
s ce10.chrX              1487640 101 + 17718866 ----TTTCTGAAAATTGAGGCGAAAAAGTTTTCCGATACAGTGTGATCCTAGATTATTTTTTAAAAGTGATTGAAACAC-------------TGTCAGAATAAAGATAACAAAATCAA------------------------------------------------------------
s cb4.chrX              20847532  45 - 21540570 AGTGGTTCggaaaa--------------------------------------attgtgtttcgA----------------------------TATGGATTTTA-------------------------------------------------------------------AACTGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   949233 154 -  1162296 cat--ttctgaaaacaaaaggaaGAAAATT----------------------CTTGAGTCACGACAGAGTAGTAAACACGGTTTTCTGGCTCTGTGAGTTTCAAAGTTAACACATAGAACAGTTTGGCTTAGAACAAGCAAGGATGTTGCACATCAGTTGAATAATGAGTAACTGCAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     98644  11 +   141934 --------------------------------------------------------------------------------------------AATGAAAGTAA---------------------------------------------------------------------------
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       463619  19 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=-1451.000000
s ce10.chrX              1487741  5 + 17718866 AGAGG----------
s cb4.chrX              20847577  5 - 21540570 GCTGA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   949387 15 -  1162296 ACCGGatcgaaacgg
i caeRem4.Crem_Contig24 C 0 I 330
e caePb3.Scfld02_62       463619 19 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98655  0 +   141934 C

a score=0.000000
s ce10.chrX              1487746 14 + 17718866 TAATAATATTTTAT
e caePb3.Scfld02_62       463619 19 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847582  0 - 21540570 C
e caeSp111.Scaffold514     98655  0 +   141934 C
e caeRem4.Crem_Contig24   949402 330 -  1162296 I

a score=12.000000
s ce10.chrX              1487760 28 + 17718866 ACCCTTTTTACAGTTTTTTTTTTTAAAT
s cb4.chrX              20847582 22 - 21540570 -----TTTTAC-GTGGTTTTTTCTAACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     98655  8 +   141934 --------------------TTTTAAAT
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       463619 19 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeRem4.Crem_Contig24   949402 330 -  1162296 I

a score=-1026.000000
s ce10.chrX              1487788 109 + 17718866 TTTGACTTGCGACTACCGATCGTGACGGCGCACAACTTTAGACTCTCCCCCAAATTTTACCATTGGTTGTCAGATAAGAAAGCTTGCTCAGCATGAAAAAAAAACTATA
s cb4.chrX              20847604  57 - 21540570 TGTGGCTTCTGA----------------AGcaccattttgaaattatct-----------------ttGTTAAAAAATAGCGCC-------------------ACTTTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       463619  19 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98663   0 +   141934 C
e caeRem4.Crem_Contig24   949402 330 -  1162296 I

a score=1159.000000
s ce10.chrX              1487897 6 + 17718866 AAACAA
s cb4.chrX              20847661 6 - 21540570 AAATAG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       463638 6 +   783054 AAACAA
i caePb3.Scfld02_62     I 19 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98663 0 +   141934 C
e caeRem4.Crem_Contig24   949402 330 -  1162296 I

a score=-6275.000000
s ce10.chrX              1487903 33 + 17718866 AAATTTAATATCTACTTGAAAGTTACTAATTTT---------
s cb4.chrX              20847667 31 - 21540570 ------AGTG-----CTGCCAAATAACTGTTCTGTCAAGTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514     98663  8 +   141934 -------------------------acatttta---------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       463644  7 +   783054 --------------------------CAGTTCT---------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeRem4.Crem_Contig24   949402 330 -  1162296 I

a score=94940.000000
s ce10.chrX              1487936 214 + 17718866 TACATCAGTTCCAAAATGTTT--------------------TAAATACAATTTCAGGTATCCCAAGCATTTGTCAAAGCATCAGTTGACAACAACAACCACCCATTATCAATTATCAATGTTTCATCAATTGTCGGCAAAATGGGAAATTTCGGCCAAACCAACTACGCAGCCACCAAGGCCGGAGTCATCGGGTTCACAAAATCTGCAGCGAAAGAGTTGGCGAAAAAGGTGA
s cb4.chrX              20847698 197 - 21540570 --------------------------------accaa---ttgaaa--aatgtcagGTCTCTCAAGCTTTCGTCAAGTCATCGATTGACGATAACAATCATCCACTTTCTATTATAAATGTCTCATCTATTGTCGGcaaaatgggaaattttggaCAAACCAATTACGCTGCTACTAAAGCCGGAGTGATTGGATTCACAAAGTCTGCTGCCAAAGAATTGGCTAAAAAGgtga
i cb4.chrX              C 0 I 62
s caeRem4.Crem_Contig24   949732 232 -  1162296 TGCATACTTTGCAAAATATTCTCTGCTTCATAATCaacttttctat--aatttcagctCTCCCAAGCATTTGTGAGGGAATCCGTTGAAAACAACAACCACCCACTCTCCATTATCAACGTTTCCTCGATTGTCGGAAAGATGGGAAACTTTGGACAAACCAACTACGCAGCTACAAAAGCTGGAGTCATTGGATTCACAAAGTCGGCTGCTAAGGAGTTGGCTAAAAAGGTGA
i caeRem4.Crem_Contig24 I 330 I 1
s caeSp111.Scaffold514     98671 188 +   141934 -----------------------------------------ta-----aatttcagGTCTCTCAAACTTTTGTAAAAGCATCTGTGGATAATAGCAATCATCCGCTGTCTATTATTAATGTGTCTTCAATTGTGGGGAAAATGGGAAACTTTGGACAGACGAATTATGCAGCAACTAAGGCTGGAGTTATTGGATTCACTAAGTCAGCAGCTAAAGAATTAGCCAAAAAGGTAA
i caeSp111.Scaffold514  C 0 I 41
s caePb3.Scfld02_62       463651 182 +   783054 -----------------------------------------TG---------TCAGGTATCTCAAGCTTTTGTGAGAGCGTCGGTGGACAATAACAACTATCCGCTTTCTATCATAAATATGTCGTCGATCGTTGGAAAGACAGGAAACTTCGGAGTGACAAACTACGCTGCTACTAAGGCTGGAGTTATTGGATTTACAAAATCGGCAGCGGAAGAATTGGCCCGAAAGGt--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=0.000000
s ce10.chrX              1488150 1 + 17718866 G
e caePb3.Scfld02_62       463833 0 +   783054 C
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847895 62 - 21540570 I
e caeSp111.Scaffold514     98859 41 +   141934 I
e caeRem4.Crem_Contig24   949964 1 -  1162296 I

a score=1037.000000
s ce10.chrX              1488151 45 + 17718866 TAGTTTCTGATTTTGCGGCAAATCTCAAATAGaaatataatataa
s caePb3.Scfld02_62       463833 45 +   783054 tggttttcgattttttgtggaGTTTTCAACAGCTTTGGAATCTAA
i caePb3.Scfld02_62     C 0 I 5
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847895 62 - 21540570 I
e caeSp111.Scaffold514     98859 41 +   141934 I
e caeRem4.Crem_Contig24   949964  1 -  1162296 I

a score=0.000000
s ce10.chrX              1488196 637 + 17718866  
e caePb3.Scfld02_62       463878   5 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847895  62 - 21540570 I
e caeSp111.Scaffold514     98859  41 +   141934 I
e caeRem4.Crem_Contig24   949964   1 -  1162296 I

a score=570.000000
s ce10.chrX              1488833 55 + 17718866 AAATTAAAATCTCGATGCACCATGTTCGGGGGAATCGCCTTTTGACCACTACCAT
s caeRem4.Crem_Contig24   949965 46 -  1162296 AAATTGTCATCTGAATCAACCATACCGCCAGGAA---------AACGACTgctat
i caeRem4.Crem_Contig24 I 1 C 0
e caePb3.Scfld02_62       463878  5 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847895 62 - 21540570 I
e caeSp111.Scaffold514     98859 41 +   141934 I

a score=-756.000000
s ce10.chrX              1488888 13 + 17718866 CTTACTG--AAATTT
s caeRem4.Crem_Contig24   950011  9 -  1162296 ctt------caattt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       463883 14 +   783054 CTTGCCAAACAATC-
i caePb3.Scfld02_62     I 5 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20847895 62 - 21540570 I
e caeSp111.Scaffold514     98859 41 +   141934 I

a score=302.000000
s ce10.chrX              1488901 2 + 17718866 TT
s cb4.chrX              20847957 2 - 21540570 tt
i cb4.chrX              I 62 C 0
s caePb3.Scfld02_62       463897 2 +   783054 CT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     98859 41 +   141934 I
e caeRem4.Crem_Contig24   950020 0 -  1162296 C

a score=137451.000000
s ce10.chrX              1488903 239 + 17718866 TCCAGAACGTACGTGTGAACGCAGTGCTCCCAGGCTTCATCAAGACCCCAATGACAGAGGCAATGCCACCGACTGTGTTGGCCGAAATCTGTAAGGGAATTCCAATGGGCCGGATGGGTGAAGCCGAGGAAATCGCCAACTCCGTCTTGTACCTTGCCTCTGATCTCTCCTCATATGTGACTGGTGCCACTTTGGAAGTTACCGGTGGATTTAGTATGTAGATTAAATTT---AGACTTTTT
s cb4.chrX              20847959 240 - 21540570 tctagaatgttcGCGTCAATGCTGTGCTTCCGGGATTCATCAAGACACCAATGACAGAAGCAATGCCTCCAAACGTTCTAGCTGAGATTTGCAAGGGAATCCCTATGGGACGAATGGGCGAAACTGAAGAAATAGCCAATTCTGTTCTCTTCTTGGCCTCTGATCTCTCTTCATACGTGACTGGTGCAACATTGGAAGTTACTGGTGGATTCAGCATGTAAATA--gttcagaaaattgttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   950020 234 -  1162296 ttcagaatgtccgTGTCAACGCTGTCCTCCCTGGATTCATCAAGACCGCAATGACCGAAAAGATGCCTCCAAACGTTCTCGCCGAGATTTGCAAAGGAATTCCAATGGGTCGTATGGGTGAACCAGAGGAAATCGCCAACTCCGTATTGTACCTGGCCTCCGATCTCTCCTCCTATGTGACTGGGGCAACTCTCGAAGTTACCGGTGGATTCAGCATGTAAAT----TT----AATTTGTTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     98900 239 +   141934 TTCAGAACATTCGTGTGAATGCTGTACTCCCTGGATTCATTAAAACACCAATGACAGAAGCGATGCCTCAAAATGTGTTATCTAGTATTTGCGAAGGAATTCCAATGGGACGAATGGGCGAATCTGAGGAGATTGCTAATTCCGTGTTGTTCTTAGCTTCTGATCTTTCCTCCTATGTAACTGGTGCCACATTAGAAGTTACTGGTGGATTCAGTATGTAAATTGAGTTC---AGAGTATTT
i caeSp111.Scaffold514  I 41 I 88
s caePb3.Scfld02_62       463899 227 +   783054 TTCAGAACGTTCGAGTAAATGCTGTTCTTCCTGGTTTCATCAAAACACCAATGACGGAAGCAATGCCACCAAACGTTCTAGCGGAAATTTGCAAAGAAATTCCAATGGGTAGAATGGGCGAAGCTGAAGAAATTGCCAACTCCGTATTGTTCTTGGCCTCTGATTTCTCATCATATGTGACTGGTGCCACTTTAGAAGTTACTGGTGGATTTAGcatgtaactt---------------ttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=-11606.000000
s ce10.chrX              1489142  84 + 17718866 ACTTTGACGGTTTATATCGTGGATTTT--AAAACTTCTGGAGATTTTTATTT-------------AATTAAT------------GTATACTTTTGAAAGTCTATGAAAAAA
s cb4.chrX              20848199 101 - 21540570 --------ttttagtgAACCATTATTG--TAAGCTTTTGAATagttgtttttcaattgtatGGGCaataaaatcatcaaaatataTACATTTTCGCGAATCAATGCAAAAA
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig24   950254  53 -  1162296 --------GATTTGTTTTCTAGGATTGGTTAGAATTTCGGAGATTTATTTGACA-----------AATGAAA---------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464126  28 +   783054 -----------ttgttactaGTTTTTCTTTACAATTTTG------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     99139  88 +   141934 I

a score=-21552.000000
s ce10.chrX              1489226 440 + 17718866 TCTGAAACTATGCCCTCAAAGTAAGCAGGTAGCTTGGTTTAGAATCTTTGTTGATATTGTGATTAACTTTGTTTCATGAAATGAATATTTGTTTTAAATCGGGATATCTTTATTAGTGATCAAATATACATTATAATTAAAAAATGAAATAAATGTTATTCAAATTATTGCACGAAGGTTTAACAAAACTGTTTTGTATAATTGTTCAATTGAAAACTTTCACGTTTTGTTAACAAAATTTGAGTATAAGGTTATTGATAAATAGGAAAACTCTAAACTAAATGTTAATGAACCCAGCAAATTACATTTTTGTCAGTGCAAACATTTTTTGGTCAGTGCAAACATTTTTTGTTTAGTGCAAACATTTTTTTGCTAAATGTTTCTTAGTCACTGCCCGAAGTGAAATATTTTAATTTTGAAAAAAAACTCAAGTAACTTAT
s caeRem4.Crem_Contig24   950307 141 -  1162296 ----------------------------------------------------------------------------TGAAC--------TGTGTC-------------TATAAACTAATCCCAAT----------------------------------------------------------------------ATATACATGTTGAA-------------------Gtcaaaaatata-gagaaaGG------TGACAAACAGTGAAGTTCT-------------TTGGCTGGAGACAAATATATAT----------------------------AGAAA---------TTAAGGATTGGAACctt--------------------------------------------------aaaaaacagaatatta------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464154 173 +   783054 ---------------------------------------------------------------------TGTTATATGAAA--------CGTTTCGGCTAGG--TTTTTATGCTCGTGTCCAAATA---------------------------------------------------------------------ATATACAGTTTCga-------------------gacggaaaaatatgagaagag------tgaaaaatagaagagaac----------------------ggaaaaataaatag---------------------gatcagaaaaaa---------gtcattcttggttttttgtt-----atgtt--------------------------------ttctgggagaaaatgaaaccaa-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848300  37 - 21540570 I
e caeSp111.Scaffold514     99139  88 +   141934 I

a score=32243.000000
s ce10.chrX              1489666 114 + 17718866 TCAAAAATGTCTAGAAACATTAATCGGAGAATACTCATCAGGCTTATTCACAAAATCCAAACTAATGTCACAAATTTCAATAGGAGCCGACTCGTCAATGTCTTCCTCGCGGGA
s cb4.chrX              20848337 114 - 21540570 ttaaaaatgatttgaaatattgattGGTGAGCAATCTGCTGGGCTGTTCAATAGGTTGAGACTAATGTCACAAATTTCGATGGGTTCCGAGCGGATGATATCTGCTTCTCGCGA
i cb4.chrX              I 37 I 152
s caeRem4.Crem_Contig24   950448 114 -  1162296 tcaaaaatgattggaCAAATTGATTGGGGAACAGTCGGCTGGGCTATTTAAGAAATCAAGACTAATGTCGCAGATTTCGATTGGCTGGGATTGAATGATATCCTCCTCGCGGGA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464327 114 +   783054 TCAGAAGTGATTGGAGATATTGATTGGGGAACAATCAGCTGGGCCGGTCAGGAAGTCCAGACTGATGTCACAAATCTCAATTGGCTGAGACTGGATAATTTCTTCATCTCGTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     99139  88 +   141934 I

a score=1109.000000
s ce10.chrX              1489780 87 + 17718866 GTGTGAAGTGTTGATTCGAAGTTGAGTGGAACGTGTTGGTACCGTGATTCTGAATTTATTACTTGGAAACTGTA-----TAATTTTATTTTT-
s caeRem4.Crem_Contig24   950562 74 -  1162296 ---GTTGGTGTTGACACGTAGTTGGTTAGCTCGGGGTGCTGGAGTTTCACGGGATCTATAAat----------------agtttttgtatttt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464441 86 +   783054 ---GGTGGGGTTAACTCGGAGTTG---CGAGCGGCTTGGTGGAGTGTCGcgagatctgaaaattttaatttttcttcacagatattgttttt-
i caePb3.Scfld02_62     C 0 I 196
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848451 152 - 21540570 I
e caeSp111.Scaffold514     99139 88 +   141934 I

a score=-1639.000000
s ce10.chrX              1489867 132 + 17718866 AGCAATTGAAAATGTTAATGTCACAAAAACACCTGTTTCTAGATTTTGCGCATAAAAGTTTGAACTGAACGTAGACACCcatgtggtgtcaggctgtctcaatacggtttgatctacaaaaaatgccggaac
s caeRem4.Crem_Contig24   950636  60 -  1162296 -----cttgaaatctcgGTG----GGAAATACTTTT----------------------------------GTGAAGAGCcctttagt--------------------tttg---------aaatgttaaaaC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       464527 196 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848451 152 - 21540570 I
e caeSp111.Scaffold514     99139  88 +   141934 I

a score=-1171.000000
s ce10.chrX              1489999 54 + 17718866 ttttccccagaaaaattgtaacgtcagcaaggtcttaacatgcgaaa----------tcagttg
s caeRem4.Crem_Contig24   950696 52 -  1162296 TCTTTTCGAGAAGTGT----GAGActa------cttgaaatttgaaattcaccTGCTTCAGT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464723 54 +   783054 ttttgttgaaaaatgttttaacgACGA-----GCTAGAAATTCAAGATGAAA-----TCAGAAG
i caePb3.Scfld02_62     I 196 I 104
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848451 152 - 21540570 I
e caeSp111.Scaffold514     99139 88 +   141934 I

a score=-112.000000
s ce10.chrX              1490053 70 + 17718866 agaagtctgcgtctcaccttccgcatttttcgaaaatcaaaacgaattgggactttctgactc-------------------cacgtgA
s caeRem4.Crem_Contig24   950748 77 -  1162296 -GAAGCCGGtg-----------gctttttttgaaattctgagtAATGTGAGAGTGTGAAACTTTAACACAATGGAGGCTACACAAGCAA
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62       464777 104 +   783054 I
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848451 152 - 21540570 I
e caeSp111.Scaffold514     99139 88 +   141934 I

a score=4403.000000
s ce10.chrX              1490123 49 + 17718866 TTACCTGGATGGCCCGGGCGCCGACGTTTGTAAACT---ACCATGCGACAGC
s caeRem4.Crem_Contig24   950825 49 -  1162296 GTACCTGGATGGTCCTGGAACCGACG---GTGAACTTGAACTCTGCGAGATT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464881 49 +   783054 ATACCTGGATGGTCCAGCTCCAGATG---GAGAACTTCCACTTTGAGAAAGT
i caePb3.Scfld02_62     I 104 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e cb4.chrX              20848451 152 - 21540570 I
e caeSp111.Scaffold514     99139 88 +   141934 I

a score=12267.000000
s ce10.chrX              1490172 83 + 17718866 TTCCTTGTCGGAGACGCCTTCTCCTCAATGCTAGCTGGAAAGGAAGAAAATAAAATTTTCTTGGCAAGACCATA-------ATAATTCTA
s cb4.chrX              20848603 75 - 21540570 TTCCTTGTTGGTGATGTTTTGTCTTCCGAGCTGGCTGG--A----------ACATTTGTTTGAATGAATGGAAAGTTTTTTATACGG---
i cb4.chrX              I 152 C 0
s caeRem4.Crem_Contig24   950874 71 -  1162296 TTCCTGGTCGGTGACGCCTTCTCCTCAACGCtggctagaaa----------aaagtttcttaaGCGAGTCCACGG------ATACTT---
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       464930 71 +   783054 TTCCTAGTTGGTGAAGCCTTGTCCTCCGTGCtggctagaaa----------aaagtttcgtaaGCGAGTCCATGG------ATACTT---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I
e caeSp111.Scaffold514     99139 88 +   141934 I

a score=4816.000000
s ce10.chrX              1490255 10 + 17718866 CAAAACTTAC
s cb4.chrX              20848678 10 - 21540570 TAATACATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   950945 10 -  1162296 TGACACATAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     99227 10 +   141934 CAATACGTGC
i caeSp111.Scaffold514  I 88 C 0
s caePb3.Scfld02_62       465001 10 +   783054 TGACACATAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    25991 3630 +   115485 I

a score=47608.000000
s ce10.chrX              1490265 52 + 17718866 CGTCACTGAAACTCTCCCTGCTCATCAGACGTGCTAGTTTTGTGATAAGTCT
s cb4.chrX              20848688 52 - 21540570 TGTCACTGAAACTTTCTCTGCTCATGAGTCGCGTAAGTTTTGTAATTAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   950955 52 -  1162296 CGTCGCTGAAACTCTCCCTGCTCATCAGTCGCGTTAGTTTTGTGATAAGTCT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     99237 52 +   141934 CGTCGCTATAACTTTCTTTACTCATCAGTTGCGTAAGGTTTGTGATAATCCT
i caeSp111.Scaffold514  C 0 I 437
s caePb3.Scfld02_62       465011 52 +   783054 CGTCGCTGAAACTCTCTCTGCTCATCAGTCGCGTTAATTTTGTGATAAGTCT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    29621 52 +   115485 CGTCGTTGAAACTCTCTCTGCTCAAGAGTCGAgataattttgtcaatagcTT
i caeJap4.Scaffold16506 I 3630 C 0

a score=6372.000000
s ce10.chrX              1490317 15 + 17718866 CGATCTGGTCTGAAA-------
s cb4.chrX              20848740 15 - 21540570 TGATCTGGTCTGaaa-------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24   951007 15 -  1162296 AGATCTGCtctaaaa-------
i caeRem4.Crem_Contig24 C 0 I 44
s caePb3.Scfld02_62       465063 15 +   783054 AGATCTGGTCtaaaa-------
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold16506    29673 22 +   115485 CGATCTTGCCTGAATTTAGTTA
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=-1683.000000
s ce10.chrX              1490332 31 + 17718866 CTTCTCAAAAATTTTATTTCAAGATGATAAA
s cb4.chrX              20848761 31 - 21540570 cattttaaatttttaagtcAATAATCGTAAG
i cb4.chrX              I 6 I 1
s caePb3.Scfld02_62       465079 29 +   783054 cagttgaaagtCT--AGTAGTCTGCcgtgaa
i caePb3.Scfld02_62     I 1 I 14
s caeJap4.Scaffold16506    29695 26 +   115485 TGTTTCAATGCCTTTATT-----GTTGAGGA
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   951022 44 -  1162296 I

a score=95220.000000
s ce10.chrX              1490363 209 + 17718866 ATTCTCACCGGTTCAGCGACAGTTTTG---TCCTTGTGAAAATATTCCATTTCCTCTCTGGTCATTGTGTACTTCTTGTGGTGCCAACCGTACACAAAATGAATTTTGATACTTTGTATAATCTTTTTCCAGACACTTTCTATGATTTTCTTGTCATTATTGCATACTGGACCTTCGTAGCATGTGAGAGAAATGAAGTCAATATGTTTCTG
s cb4.chrX              20848793 206 - 21540570 ATTCTTACTGGTTcgctt---gttttt---tctttcatgaAATATTCCTTTTCCTCGCGAGTCATGTTATACAATTTATGGTGCCAGCCGTAGACAAAATGAACCTTGAtgttttgaattattttctcCCAGACTCCCGAAATAATTGCTTTCTCCTTATTGCAAACAGGGCCTTCAAAACAGGTTAGAACAATAAAGTCCATATGCAtctg
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24   951066 206 -  1162296 AAACTCACCGTCTCGGTG---ACTTTG---TCCTTGGAGAAGTACTCGAGCTCCTCGCGAGTCATAGTGTATTTCCGGTGGTGCCATCCGTAGACAAAGTGGACCTTGATGCTCTCGATAATCTTATGCCAGGTTCCCATGataatatttttctcttcgcTGCAGACTGGTCCCTCGAAGCATGTGAGGGTGATGAAATCCATATGCATCTG
i caeRem4.Crem_Contig24 I 44 C 0
s caePb3.Scfld02_62       465122 206 +   783054 agacTTACTGGCTCAGca---gctttt---tcttttgagaaatattcaaGTTCCTCGCGAGTCATAGTGTACTTTCTGTGGTGCCAGCCATAGACAAAATGAACtctgatgtttttgatgattttctccCAAACACCGGCAATGATAGTTTTCTCATTATTGCAGACTGGTCCTTCGTAGCAAGTGAGAACAATGAAATCCATGTGCATCTA
i caePb3.Scfld02_62     I 14 C 0
s caeJap4.Scaffold16506    29721 206 +   115485 ---CTTACCGGTTCAATA---GCCTTGTCTTCTTTAAAAAAGTACTCCAACTCGTCGCGAGTCATGGTGTACATCTTATGATGCCAACCATAGACAAAGTGTACTTTTATACTGTCGATGATTTTCTCCCAGACTTTGGCAACTACGTTGCGTTCATCGCTGCACACCGGGCCTTCGTAGCAGGTTAGAGCAATAAAATCCATGTGCATCTA
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=546.000000
s ce10.chrX              1490572 1 + 17718866 A
s caeRem4.Crem_Contig24   951272 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 I 45
s caePb3.Scfld02_62       465328 1 +   783054 A
i caePb3.Scfld02_62     C 0 I 153
s caeJap4.Scaffold16506    29927 1 +   115485 A
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20848999 0 - 21540570 C
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=151.000000
s ce10.chrX              1490573 3 + 17718866 GAA
s caeJap4.Scaffold16506    29928 3 +   115485 AAA
i caeJap4.Scaffold16506 C 0 I 1537
e caePb3.Scfld02_62       465329 153 +   783054 I
e cb4.chrX              20848999 0 - 21540570 C
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   951273 45 -  1162296 I

a score=0.000000
s ce10.chrX              1490576 1247 + 17718866  
e caePb3.Scfld02_62       465329  153 +   783054 I
e caeJap4.Scaffold16506    29931 1537 +   115485 I
e cb4.chrX              20848999    0 - 21540570 C
e caeSp111.Scaffold514     99289  437 +   141934 I
e caeRem4.Crem_Contig24   951273   45 -  1162296 I

a score=488.000000
s ce10.chrX              1491823 49 + 17718866 AAGTTTAAACCCTGGTTTTTCAATTCTAAAATATTATCCCTCTGTAAAA
s cb4.chrX              20848999 42 - 21540570 aaatttaggaattAGTTTTCTAT-------GTACTACATTCTTGTACAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62       465329 153 +   783054 I
e caeJap4.Scaffold16506    29931 1537 +   115485 I
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   951273 45 -  1162296 I

a score=0.000000
s ce10.chrX              1491872 3 + 17718866 CTG
e caePb3.Scfld02_62       465329 153 +   783054 I
e caeJap4.Scaffold16506    29931 1537 +   115485 I
e cb4.chrX              20849041 0 - 21540570 C
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   951273 45 -  1162296 I

a score=176672.000000
s ce10.chrX              1491875 432 + 17718866 ACCTCCGCCCATAAATTGAACAAATGAAAGTACTCCTCAACAGCCACCAACGGCGCCAACGACCTGTACCGTCCTCCAAAAACATGAAGCTTTCTATAAAATTCCTCATCAACA---------------GTGCCGTTATGATAACTAGATATAGTCTCATGAAACATTTGGAGCATATGAAGCACACATCGGTCCAGAACAAAATGTTGTTTCCAGGAATCACTTTTCACTTGTTCCACGTTGAATAGTTTTGTTAGATGGTCACGATCAATTAAAAATGTCTCGAAGGCTTTTGCTCCGATATCGTAGAGTCTGGAA-AAAAAAGTTGAATCAAAATGAGAAAGAAAACAA--------AAAAATGAGCTCACGCTTCAAAGTTGTCCGGCCAATGTTTGTGGCAAAGCTCCATGTGATTTGGCAAAACGTCTAGCTGGTTGGACTCCGGCTAAA
s cb4.chrX              20849041 441 - 21540570 ACTTCAGTCCACACATTGAACAGGTGAAAGTACTCTTTGACCGGTACCATTGGCGCGAGACATCTGTATCTTCCTCCAAACGTTtggatctttttgaaaaactcttcGTCAATTTTGTTTCCTCCACTCATATCTTCATGATATACAGAAATCGTTTCGTGCAGCATTTGGAGCATATGAAGAACACATCGATCCAATACAAAATGCTGACGCCACGTCTCACTTTTGACTTGATCTACTTTGAACAGTTTCACAAGATGATGTCTGTCAACCAAGAACGTCTCGAATGCTTTTGCTCCTATATCGTAGAGTCTAAAA-GGTTTCATGCACATTGCTTGAAGAAATTGAT----------ATA----GTCTCACGTCTCAAAATTGTCTGGCCAGTGTTTGTGACAGAGTTCCATGTCTTTTTGAGTGACATCAAGCATGTTGTTTTTTGGCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   951318 436 -  1162296 ACCTCAGTCCAAACATTGAACAGGTGGAAGTACTCGTTTACGGGAACCAACGGCGCCAATGATCGGTACCGTCCCCCAAATGTTTGCAGCTTCTTGTAGAATTCCTCGTCAATT---TTCCCTCCACTCATCTTCTCATGATACTTGGAAATGGTCTCATGCAACATTTGAAGCATGTGAAGCACACATCGATCAAGTACAAAATGTTGTCTCAATGATTCAGTTTTCACTTGATCTATTTTGAATAGTTTCGCAAGATGGTCACGATCCAAGAGAAACGTCTCGAAGGCTTTTGCTCCGATGTCATAAAGCCTGAAA-TGAAGTGTG------------AAAAGCTGATCG----TGTGATAGGGGGTCTCACGCTTCAAAATTATCAGGCCAATGTTTGTGGCAAAGCTCCATTTCCCTTGCAGTGACGTGAAGTATGTTGTTTTCCGGCTGAA
i caeRem4.Crem_Contig24 I 45 C 0
s caePb3.Scfld02_62       465482 438 +   783054 ACCTCTGACCACACATTGAACAGATGGAAATATTCATTGACTGGCACTAACGGTGCCAAACACCGATACCGTCCACCGAATGTTTGAAGCTTTCGGAAGTAgctctcttcaatt---ttcttcccgCTCATTTCTTCGTGATAAGTTGTGACGGACTCATGAAGCATTTGAAGCATGTGAAGAACGCAGCGGTCCAGAACAAAATGCTGCCTCCAGGCTTCACTTTTGACCTGCTCCACTTTGAACAGTTTTGCAAGATGATCACGTTCAATTAAAAAAGTCTCAAATGCCTTTGCGCCAATGTCATAGAGTCTAAAATTGGAATGT-------------AAAGGTAAGTTA--TCTATGCTCAAGTATCTTACGCTTCAAAGTTATCTGGCCAGTGTTTGTGACAGAGTTCCATGTCAGGTTTGGTGACATCCAGTCTGTTATTCTCCGCCTAAA
i caePb3.Scfld02_62     I 153 C 0
s caeJap4.Scaffold16506    31468 451 +   115485 ACCTCTGACCAAATCccaaaaagataaaaatactCTTGAACAGGCACTTTTGGCGCTAGGGAACGGTAGCGACCGCCAAACGTCTGCagctttttgtaaaaattctcATCAGTT---TTGATTCCTCTCATTTCCTCGTGATACTTTGAAATCGCCTCGTGTAGCATTTGAAGCATGTGTAAAACGCAACGATCCAACACGAAATGCTGTCTCCACGAATCTGCCTTAACCTGATCTAGCTTGAACAGCTTTGCTAAGTGACATCTTTCTATCAGAAAATTCTCGAAGGCTTTGGCACCAATGTCGTATAGCctggaa-agaaaagaaaacaacgcGTG-GGAACTTGACGGACGCAAAAATGTATGCTCTCACGCTTCGAAGTTATCTGGCCAATGTTTGTGACACAACTCCATATCCTTGAAAGATACGTTCAGAGTGTTGTTCTCGGCCTGAA
i caeJap4.Scaffold16506 I 1537 I 379
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=-443.000000
s ce10.chrX              1492307 7 + 17718866 AAATGTG
s cb4.chrX              20849482 7 - 21540570 GTATAtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   951754 7 -  1162296 AAGCGCG
i caeRem4.Crem_Contig24 C 0 I 849
s caePb3.Scfld02_62       465920 7 +   783054 ATAAATC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    31919 379 +   115485 I
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=819.000000
s ce10.chrX              1492314 3 + 17718866 ATA
s cb4.chrX              20849489 3 - 21540570 ata
i cb4.chrX              C 0 T 25214
s caePb3.Scfld02_62       465927 3 +   783054 ATA
i caePb3.Scfld02_62     C 0 I 1298
e caeJap4.Scaffold16506    31919 379 +   115485 I
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   951761 849 -  1162296 I

a score=0.000000
s ce10.chrX              1492317 1935 + 17718866  
e caePb3.Scfld02_62       465930 1298 +   783054 I
e caeJap4.Scaffold16506    31919  379 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289  437 +   141934 I
e caeRem4.Crem_Contig24   951761  849 -  1162296 I

a score=546.000000
s ce10.chrX              1494252 6 + 17718866 AAATTA
s caeRem4.Crem_Contig24   952610 6 -  1162296 AAATTA
i caeRem4.Crem_Contig24 I 849 C 0
e caePb3.Scfld02_62       465930 1298 +   783054 I
e caeJap4.Scaffold16506    31919 379 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=-300.000000
s ce10.chrX              1494258 6 + 17718866 AATACC
s caeRem4.Crem_Contig24   952616 1 -  1162296 -----A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       467228 6 +   783054 AATCTC
i caePb3.Scfld02_62     I 1298 C 0
e caeJap4.Scaffold16506    31919 379 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=16004.000000
s ce10.chrX              1494264  93 + 17718866 ACTCACCAGCAACCCCTTTTGCTCGTAGAGCTGATGTGCTTCCTTGTTCTTCATAATATCTAATGGGTCCGAAATTAGCGTTGACA--------TTATTT---------------T
s caeRem4.Crem_Contig24   952617  92 -  1162296 ACTCACCCGCAACCCTTTCTGTTCGTATAGCTGATGCGTTTCCTTGTTGGTCAGAATATCAAGCGGCTCGACTATGAGACTCGACA--------TCGCTG----------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       467234 116 +   783054 ACTCACCAGCATTCCTTTCTGCTCATACAACTGATTGGCGTCTTTACTGGTCAGGATGTCCATCGGATCTGCTATTATATTTGCCATATTTTTGTCACTGCTCAGTCAACCTCGGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    32298  93 +   115485 ACTCACCAGCATTCCTTTATCCTCGTAAAGTTGATGAATCTCCTTATTGTTAATAATATCCAGTGGCTCACCAATAatgtttgcca------tttttct-----------------
i caeJap4.Scaffold16506 I 379 I 522
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=-325.000000
s ce10.chrX              1494357 34 + 17718866 TAAATTCGAGAATATTGCGTTGTAAATGAAAGTG
s caeRem4.Crem_Contig24   952709 11 -  1162296 ----------------GAGTTGAAACA-------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       467350 34 +   783054 AAAATCTGAACAAAACGAGTTGAAAATGAGACTG
i caePb3.Scfld02_62     C 0 I 632
e caeJap4.Scaffold16506    32391 522 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=1208.000000
s ce10.chrX              1494391 28 + 17718866 GAGGGCTACTCTCGACAACACCCGAGCT
s caeRem4.Crem_Contig24   952720 28 -  1162296 GGGGGCAACACTAGGCAATATCAAAGCT
i caeRem4.Crem_Contig24 C 0 I 797
e caePb3.Scfld02_62       467384 632 +   783054 I
e caeJap4.Scaffold16506    32391 522 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=0.000000
s ce10.chrX              1494419 523 + 17718866  
e caePb3.Scfld02_62       467384 632 +   783054 I
e caeJap4.Scaffold16506    32391 522 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   952748 797 -  1162296 I

a score=91.000000
s ce10.chrX              1494942 1 + 17718866 T
s caePb3.Scfld02_62       468016 1 +   783054 t
i caePb3.Scfld02_62     I 632 C 0
e caeJap4.Scaffold16506    32391 522 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I
e caeRem4.Crem_Contig24   952748 797 -  1162296 I

a score=-5130.000000
s ce10.chrX              1494943 228 + 17718866 ATTTCAATATG-AATTTTTGGAGACTTTTTATAACTTCTGAGTTTT---TAAAAGTTTTGAAAAAGA----------TATATTTATCAATTTTTACGTGTTTT--------------------AAAATTAATCTTATGAGGTTATTGAAAAAAAAATAAAGCAACAAACTAAATAAATACAAATTCAGAGTTCAATATA--------TATTTGCATGAA-AGACCGGTA---------------------------AGTGAAAATTTGGAGGTAATTGGAAAAAGTTCTAGGACTAG---------------A
s caeRem4.Crem_Contig24   953545 198 -  1162296 atttcaatgtG-AATTCTAAGAACATTTAT-------------------AAAAGagtcagaaaaataa---------tacatttac-------------------------------------aataataaattcaatatattg---------atatcaattaataag--------tttaaaa--aatagttcaatATG--GGACAG-------------AGACCGGTAATAATTGatagataagaaaaaagaggtaTCACAGATATTCAAATCAGGGGTAAacattctaaaactga---------------a
i caeRem4.Crem_Contig24 I 797 C 0
s caePb3.Scfld02_62       468017 303 +   783054 gtttcaaaatgtcattttcaggattttttt-ttcttcctgagTTGATTcaatgaaatcggaaaaagaaaaaaaaatctaaactcac--atcattatatttttctttctcgattctcacacctgaaaaaaaatttcagtagaTTGTGG---CATATTTTATTTGACGAGAAAGagtaatacaaa--aaaaattcaatatgaaGGATAATATTAAGATAAATAGACCggta--aactgaaaattaaactacaacatgttgaaaaaatgagaatatatggagagaatatgaaaaatctgagTGTAGTAATCGGGTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    32391 522 +   115485 I
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=-11132.000000
s ce10.chrX              1495171  87 + 17718866 AAAG--------ATGGTATAATTTAATAAAATGC-------AAAAAACAGGAAAAGAACCGTAA-------------------GAAAAACGAGAATAAGCTTGTTTTTAAAGTTATTTCCG-------
s caeRem4.Crem_Contig24   953743  98 -  1162296 aaatgtatgtACATATTCCAATTTGGTTCAATGTCTGGCTAAAAACATAATGACAGCAGTGAAA-----------------ATGACAATTGGGAAGACgt---tgttcaaa---atttgtg-------
i caeRem4.Crem_Contig24 C 0 I 5
s caePb3.Scfld02_62       468320 108 +   783054 AGATTgatatttacattt---tttgg----agGTGTGATTAAATAAGAAGTGGTTGGAATGTAACAAGGAATAACACAGACATGAGAACCAAGAACAATT---GGTTTAGA---ATATTGG-------
i caePb3.Scfld02_62     C 0 I 5
s caeJap4.Scaffold16506    32913  80 +   115485 -AAGGATTGTACATATAAAAAGTTAATATCAT---------CAGAAGAACTACTAAAACTGTAA--------------------------------AGTT---TGCTCCCG---ATGCGTAACTCGCA
i caeJap4.Scaffold16506 I 522 C 0
e cb4.chrX              20849492 25214 - 21540570 T
e caeSp111.Scaffold514     99289 437 +   141934 I

a score=422.000000
s ce10.chrX              1495258 1 + 17718866 T
s caeRem4.Crem_Contig24   953846 1 -  1162296 T
i caeRem4.Crem_Contig24 I 5 C 0
s caeSp111.Scaffold514     99726 1 +   141934 T
i caeSp111.Scaffold514  I 437 C 0
s caePb3.Scfld02_62       468433 1 +   783054 T
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold16506    32993 1 +   115485 C
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20849492 25214 - 21540570 T

a score=50540.000000
s ce10.chrX             1495259 70 + 17718866 CATTGCACTCGTCGGTGGAGCAGCAGCAAATGGTGCCACCGCTGTCGCGTTTGTTGCATCCCTCGCGCTG
s cb4.chrX               711589 70 + 21540570 CATTACACTCGTCAGTTGAACAGCAACATAAAGTTCCTCCACCTTCACGTTTGGCACAGccttctttctg
i cb4.chrX              I 78288 C 0
s caeRem4.Crem_Contig24  953847 70 -  1162296 CATTGCACTCGTCTGTGGAACAACAGCACAGCATACCACCGCCAGGACGTCGATTACATCCTTCTTTCTG
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    99727 70 +   141934 TGTTGCACTCGTCTGTTGCACAGCAGCAAACTGTATTCCGTCCATCATGTTTATTACATCCTTctctctg
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      468434 70 +   783054 CATTGCATTCATCTGTGGAACAACAACAAAGTGTGCCGCCGCCTTCGCGCTTATTACAtccttctttctg
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   32994 70 +   115485 CATTACACTCATCAGTCATACAGCAACAAATGGTTCCTCCACTTCCTCGCTTGTTGCATCCCTCTTTctg
i caeJap4.Scaffold16506 C 0 I 1

a score=1820.000000
s ce10.chrX             1495329 2 + 17718866 AA
s cb4.chrX               711659 2 + 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  953917 2 -  1162296 AA
i caeRem4.Crem_Contig24 C 0 I 197
s caeSp111.Scaffold514    99797 2 +   141934 aa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      468504 2 +   783054 aa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   33064 1 +   115485 I

a score=-773.000000
s ce10.chrX             1495331 2 + 17718866 AA-
s cb4.chrX               711661 2 + 21540570 aa-
i cb4.chrX              C 0 I 44
s caeSp111.Scaffold514    99799 1 +   141934 -a-
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      468506 2 +   783054 -aa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   33064 1 +   115485 I
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=302.000000
s ce10.chrX             1495333 6 + 17718866 TATAAA
s caePb3.Scfld02_62      468508 6 +   783054 tatgga
i caePb3.Scfld02_62     C 0 I 594
e caeJap4.Scaffold16506   33064 1 +   115485 I
e cb4.chrX               711663 44 + 21540570 I
e caeSp111.Scaffold514    99800 0 +   141934 C
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=1034.000000
s ce10.chrX             1495339 24 + 17718866 GTTAAAGACTGATTTTTTTTAAAT
s caeSp111.Scaffold514    99800 23 +   141934 -tcaaaaacaaatcattCTTAAAT
i caeSp111.Scaffold514  C 0 I 69
e caePb3.Scfld02_62      468514 594 +   783054 I
e caeJap4.Scaffold16506   33064  1 +   115485 I
e cb4.chrX               711663 44 + 21540570 I
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=0.000000
s ce10.chrX             1495363 277 + 17718866 TTTGAGCTGAGtagcgcttccatgagaggcaggcgagttttcagggcctgttgcctgcctacttcctgcccacctctcatctcatttcaacactatggcgagaaatcaaaggcttggtgttaacaccacatagtgcgaaaggtagtcattttgccgaggccgacactttttgggtttcgcgccgggctatacaggaggcgcgtctagcggcatgaggcaagtggaggaagccTATATGGAAGCCCTAAAGCTGAAATTTGAAAAAGTTCCAAATCAT
e caePb3.Scfld02_62      468514 594 +   783054 I
e caeJap4.Scaffold16506   33064   1 +   115485 I
e cb4.chrX               711663  44 + 21540570 I
e caeSp111.Scaffold514    99823  69 +   141934 I
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=100.000000
s ce10.chrX             1495640 1 + 17718866 G
s cb4.chrX               711707 1 + 21540570 g
i cb4.chrX              I 44 C 0
e caePb3.Scfld02_62      468514 594 +   783054 I
e caeJap4.Scaffold16506   33064 1 +   115485 I
e caeSp111.Scaffold514    99823 69 +   141934 I
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=360.000000
s ce10.chrX             1495641 22 + 17718866 AATTAAACGaaaaat---ttaaata
s cb4.chrX               711708 19 + 21540570 aatttattgaggaat---tc---ca
i cb4.chrX              C 0 I 2
s caeJap4.Scaffold16506   33065 25 +   115485 aaataaatgaaaaataggCTAAGAA
i caeJap4.Scaffold16506 I 1 C 0
e caePb3.Scfld02_62      468514 594 +   783054 I
e caeSp111.Scaffold514    99823 69 +   141934 I
e caeRem4.Crem_Contig24  953919 197 -  1162296 I

a score=289.000000
s ce10.chrX             1495663 3 + 17718866 aat
s cb4.chrX               711729 3 + 21540570 aac
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  954116 3 -  1162296 AGT
i caeRem4.Crem_Contig24 I 197 C 0
s caeJap4.Scaffold16506   33090 3 +   115485 AGG
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      468514 594 +   783054 I
e caeSp111.Scaffold514    99823 69 +   141934 I

a score=916.000000
s ce10.chrX             1495666 8 + 17718866 aagatttt
s cb4.chrX               711732 5 + 21540570 ---aattc
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig24  954119 5 -  1162296 ---AATTC
i caeRem4.Crem_Contig24 C 0 I 3
s caePb3.Scfld02_62      469108 8 +   783054 aaaaatca
i caePb3.Scfld02_62     I 594 C 0
s caeJap4.Scaffold16506   33093 8 +   115485 CATAATTG
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514    99823 69 +   141934 I

a score=85482.000000
s ce10.chrX             1495674 93 + 17718866 --aaaaatCACCCGGCACTCTCCAAAATCGCAGCTGTACTGAGCTCCTTCGTAGTGTCTCCGTCCAACGTGACCATTCGAGGGGAGTCTGT-AAAA
s cb4.chrX               711739 93 + 21540570 --aacatttactTGACAAGTTCCAAAATCGCAGCTGTACTGAGCCCCTTCATAATGTTTTCGACCAACATGTCCATGTGAAGGCAGTCTGT-AAAA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  954127 93 -  1162296 --AAAATTCACCCGGCATTCTCCAGAATCGCAGCTGTATTGAGCGCCCTCGTAATGCTTCCGACCAACATGTCCATTTGCAGGAAGTCTGT-AAAA
i caeRem4.Crem_Contig24 I 3 C 0
s caeSp111.Scaffold514    99892 93 +   141934 --AAAATTAACCTGACACTCTCCAAAATCGCAGCTGTATTGCGCGCCTTCGTAATGCTTGCGACCAACATGACCATTTGAAGGAAATCTGC-AATT
i caeSp111.Scaffold514  I 69 C 0
s caePb3.Scfld02_62      469116 94 +   783054 --aaaattcaccCTGCATTCTCCAAAATCACAACTGTACTGCGCTCCTTCGTAATGCTTCCGACCAACATGACCATTTGAGGGGAGCCTGTAAAAT
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   33101 95 +   115485 ATCAATATTACTCGACATTCTCCAAAATCGCAGCTATATTGTGCCCCTTCGTAGTGTTTTCGACCAACATGACCAGTGGAGGGTAGTCTGT-AAAA
i caeJap4.Scaffold16506 C 0 I 1763

a score=1115.000000
s ce10.chrX             1495767 2 + 17718866 GT
s cb4.chrX               711832 2 + 21540570 AT
i cb4.chrX              C 0 I 605
s caeRem4.Crem_Contig24  954220 2 -  1162296 AT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    99985 2 +   141934 GT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      469210 2 +   783054 GT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   33196 1763 +   115485 I

a score=38.000000
s ce10.chrX             1495769 1 + 17718866 C
s caeRem4.Crem_Contig24  954222 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514    99987 1 +   141934 C
i caeSp111.Scaffold514  C 0 I 233
e caePb3.Scfld02_62      469212 0 +   783054 C
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I

a score=-1709.000000
s ce10.chrX             1495770 22 + 17718866 AAAAAATGATTTTCA-----TTTTGCA-----------------
s caeRem4.Crem_Contig24  954223 22 -  1162296 ----AGCAGTTTTCATAAA-GTTTGca-----------------
i caeRem4.Crem_Contig24 C 0 I 838
s caePb3.Scfld02_62      469212 35 +   783054 ---------TTTAGATGAATTTTTGCAGCTTATTCCCTTTTTGA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I

a score=-1053.000000
s ce10.chrX             1495792 259 + 17718866 AAAAAATATTCGAATAACTTTTGGTGGGGGAGTAGCAGGTGGAAAGTTGGTGG----GGGTTCTGAAGGTTAAATTTTGGTTTCTTAGAGTTTTTTCCGAAAAGACCAACACGTATGAACAGATTCAAAAATCTTAAGAATCTCGGGGATTACAGGAATGGCAGGAAATTGTTGGGtaattttacaataattatattatactaaaatttttGAAATAGTGAACCAAACCTCAAACTTCTACCTGAAATTAAAGTAGGAAAAAT
s caePb3.Scfld02_62      469247 217 +   783054 CACcggttttcaagaaa---ttagaaaatgggaaaaaaggaaaaaacaggTGATATTAAATGCcaaatgtgaaattt----------gaaatatcacCTGGATGAAAATCAGTCATGCATGGAGT------TCTGAGGAG----AGGTgttaagaaaatg--agaaaaattgtgCGGGGTTTTGTAATCGTCACG----------------GGAAAAGTGGTT----ACTGAATTTTCTTTCTtaga-aaaagttgtgaaaat
i caePb3.Scfld02_62     C 0 I 152
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I
e caeRem4.Crem_Contig24  954245 838 -  1162296 I

a score=0.000000
s ce10.chrX             1496051 302 + 17718866 TTTCAGATTTTTTTAACGAAAAAaagcctaaccctaagcctaggcctaagcctaagcatgagcctaagcctagccctgagcctaagcctaagcctagacttaagcctgagcttaagcctgagcctaagccttagacttagcctaagcctaagtttgagcctaagcctaatcctaagcctgcctagccaatgctgagcctaagcctaaACCCAAGAACTTTGTTTACGGCACAGGCTGTTTGGTGGAGCTAAGAAAGTTTAATTTTTAACATTAAGAACATTTTATTTTGGTTTTGATCAGAA
e caePb3.Scfld02_62      469464 152 +   783054 I
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I
e caeRem4.Crem_Contig24  954245 838 -  1162296 I

a score=-746.000000
s ce10.chrX             1496353 99 + 17718866 CTTCTTGAATCGGCAATTCCAAAAATGTATCCCAAAATTACTGCAGTTCCCGCATCATTTTTCTATTCTACCACCCAGCTGACTCAATCTCCCGGGCCG
s caePb3.Scfld02_62      469616 58 +   783054 CTTATTGTGTCTACAACTGAGAACAAATGATCTGA--------------TCgcctatttttcttcttct---------------------------cca
i caePb3.Scfld02_62     I 152 C 0
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I
e caeRem4.Crem_Contig24  954245 838 -  1162296 I

a score=1452.000000
s ce10.chrX             1496452 39 + 17718866 TCTATTTACCTAATGACCTTACGTGTCC--ACA--ACAGGTCC-------------------
s caeRem4.Crem_Contig24  955083 41 -  1162296 TCTATTTGCCTAATGAGCGGAGCCCTCCAAACA--ACAGGTCC-------------------
i caeRem4.Crem_Contig24 I 838 C 0
s caePb3.Scfld02_62      469674 54 +   783054 tatGTTTACCTAATGAGC--------CCCAGCAGTGCAggtcctttcttttttccctacaCA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   33196 1763 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I

a score=335.000000
s ce10.chrX             1496491 2 + 17718866 GC
s caeRem4.Crem_Contig24  955124 2 -  1162296 GA
i caeRem4.Crem_Contig24 C 0 I 17
s caePb3.Scfld02_62      469728 2 +   783054 GA
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold16506   34959 2 +   115485 GC
i caeJap4.Scaffold16506 I 1763 C 0
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514    99988 233 +   141934 I

a score=25793.000000
s ce10.chrX             1496493 36 + 17718866 CTGATAATGCGGTGTGCAAACTGGCAACT-GTTCGGT
s caeRem4.Crem_Contig24  955143 36 -  1162296 CTGATAATACGGTGCGCAAACTGGCGACC-GTTCCGT
i caeRem4.Crem_Contig24 I 17 C 0
s caeSp111.Scaffold514   100221 36 +   141934 CTGATAATACACTGTGCAAACTGTCAGCC-GTTCCGT
i caeSp111.Scaffold514  I 233 I 131
s caePb3.Scfld02_62      469731 36 +   783054 CTGATAATACGGTGTGCAAACTGGCAGCC-GTTCCGT
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold16506   34961 37 +   115485 CTGATAATGCGGTACGCAAACTGGCAGCCTGTTCCGT
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               711834 605 + 21540570 I

a score=6919.000000
s ce10.chrX             1496529 59 + 17718866 GGGGGCCCCCTTAACAACCGAGAGTAGAACGG------------------CAAATAGACACTAATCTCTCATGTTTT
s caeRem4.Crem_Contig24  955179 52 -  1162296 ---------TACACTAAGTCCTAATAAGACAG---------------ATACAAACATACACTAATCG-TCATGTTAT
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      469767 62 +   783054 ---------TACACTAAGCCCTAATAAGACAGGACCCTGACA-----GTGCAAACACACACTAATCG-TCatgttat
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   34998 65 +   115485 ---------TACGCTGAACGATAATAAGGTGG-ACTAGGAAATTAGGAGGCAAACA-ACACTAATCG-Ttatgtttt
i caeJap4.Scaffold16506 C 0 I 41
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514   100257 131 +   141934 I

a score=-6354.000000
s ce10.chrX             1496588 189 + 17718866 GCAATTTGGGACAAATGTTCATTGGGAATTAGGATTAAAATTAGTTATGGAAAGGGAGAGGTGGTTACGGT-AAACTGTGTCattatataataaaaaaaatttataGTTCACCAAGTACATCAAAATTTGTC-AAAAATTGATCAATGAGTGTTTTTTAAAAATTGTT--TTAAAGACT-AATCATTTGTGTAA
s caeRem4.Crem_Contig24  955231 129 -  1162296 TCATGTGGTT------------------------------TAATTTAGAGAAA--------CGGTTAGGTTCGGATTGTGTCCATTTGTATTGGAAATTA------------------------GGATTGAA-GAAGATTAGTTTATG-GTGTGCACT-AATGGTGTGTATTCGTGGTTCAACCAATAAGATTA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      469829 116 +   783054 tcatttttatac----------------------------tAACTCATAGAA------------TTAG----GGATTGTGTTCATTTGTATTAGTAATTATCT-------------------TGGGTTTGAACGCATTCTAGTTCA-------------AATATTGTG--TTAGTGAATGAATTAGtaggagaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   35063  41 +   115485 I
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514   100257 131 +   141934 I

a score=-3966.000000
s ce10.chrX             1496777 23 + 17718866 AATTTGGCATATTCGGTTTGTTC
s caeRem4.Crem_Contig24  955360  4 -  1162296 TAAG-------------------
i caeRem4.Crem_Contig24 C 0 I 2
s caePb3.Scfld02_62      469945 13 +   783054 aaacatgaaaatt----------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   35104 20 +   115485 AATTATACATATTTAGAATG---
i caeJap4.Scaffold16506 I 41 C 0
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514   100257 131 +   141934 I

a score=0.000000
s ce10.chrX             1496800 2 + 17718866 TA
e caePb3.Scfld02_62      469958 0 +   783054 C
e caeJap4.Scaffold16506   35124 0 +   115485 C
e cb4.chrX               711834 605 + 21540570 I
e caeSp111.Scaffold514   100257 131 +   141934 I
e caeRem4.Crem_Contig24  955364 2 -  1162296 I

a score=73433.000000
s ce10.chrX             1496802 90 + 17718866 ACTTACTTTAGGCAAAACTCAGTTCCATTACAGTCCAGAAGCTCAATTTCACCAATGGCATCCCCATTCACTGATCCTTGCATTCCT-GAA
s cb4.chrX               712439 91 + 21540570 ACATACTTTACACAAAAATCGGTTCCGTTGCAATCCAGTATTTCAATCTCTCCAATGGCATCTCCATTCACCGATCCTTGCATTCCTAAAA
i cb4.chrX              I 605 C 0
s caeRem4.Crem_Contig24  955366 90 -  1162296 ACATACTTAATACAAAAGTCTGTTCCATTACAGTCCAACAGTTCGATCTCTCCAATTACGTCACCGTTCACTGATCCTTGCATACCT-GAA
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514   100388 90 +   141934 ACTCACTTCACACAAAATTCTGTTCCGTTGCAATCCAAAAgctcaatttttccaatggAATCTCCGTTCACGGATCCTTGAATGCCT-GAA
i caeSp111.Scaffold514  I 131 C 0
s caePb3.Scfld02_62      469958 90 +   783054 acAAACTTTATGCAGAAATCGGTGGCGTTGCAATCCAATAGTTCGATTTCACCGATTGCATCTCCATTGACAGAACCTTGcattcct-gaa
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   35124 90 +   115485 ACTTACTTTATGCAATAGTCGGTGTCATTACAATCCAGCACGCTAATCTCGCCGATAGTGTCGCCGTTTACTGATCCTTGCATGCCT-GAA
i caeJap4.Scaffold16506 C 0 I 107

a score=-13807.000000
s ce10.chrX             1496892 36 + 17718866 CAAAAAAAAATCAATTC------------------------------AAAATTGCTTTTATCAGTA
s cb4.chrX               712530 60 + 21540570 TGATAGGTAATCATAATTCGTTTAAAGACATGCAATGACTATAACAGATGCTTGTCTATA------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig24  955456 28 -  1162296 TAATA--CAATAATATT------------------------------ATTCTCATCTATA------
i caeRem4.Crem_Contig24 C 0 I 516
s caeSp111.Scaffold514   100478 30 +   141934 AAAC---TAAATCTGTC------------------------------ATTGTTTATTATAATG---
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470048 12 +   783054 ---------------------------------------------------tttttttaatcg---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   35214 107 +   115485 I

a score=-13230.000000
s ce10.chrX             1496928 78 + 17718866 CTAGTATTTTAAAT------ACAAACAC--CTGtaaaaattgaatta---aattaaattta-tattG-----TT-GAAAAAATTCAG----TGTAAATTG
s cb4.chrX               712596 90 + 21540570 CGATTGATTTAAAGTTTTGTATAAGAATACCTAGTGATttgaaaatacataatttttttgagaactgaAACTTT-TTACGCGTGGAGATTG---------
i cb4.chrX              I 6 I 39
s caeSp111.Scaffold514   100508 64 +   141934 --------TTAAAG----GCACAAAACT-CATGCTGACCTTATAAT----AGTGCGACTTGGAATTA-----TT-ATACTATTGCag-------------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470060 59 +   783054 --------ataAAT----CGACAA------ATACT--CCTTgtaaca---agttttttttagctcca-----CTGATAAAATggcaa-------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   35214 107 +   115485 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=-14.000000
s ce10.chrX             1497006 24 + 17718866 ACAACACGTTGTGCTCAGTTTTTC
s caeSp111.Scaffold514   100572 10 +   141934 ------cgtt--------tttttt
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      470119  0 +   783054 C
e caeJap4.Scaffold16506   35214 107 +   115485 I
e cb4.chrX               712686 39 + 21540570 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=-38016.000000
s ce10.chrX             1497030 267 + 17718866 AGGTTTTTAAAAAACAGTAAAAAATTTCGTCGATTTGCACGTAGAATATT-TGATTAAATATATAAATGAAACTCTTTTTTGGATATTCTTTGCaaaaaata---------------------taaaaaaaattata--------------ttCTCATGGAAAAATTCCCCAAAAACGGGGTTTCGCATACTTTTAATGA---------------TTTAGAGTCA----------TTTTTGATTAAAAAAAACT-----------------ATTGAAAAATATAA----TATTTTGCAGAATTTTTT--TTTCCA-------------------AATTTCCAAAATGATTTCAGAATTGTCCGAAATTTT
s cb4.chrX               712725 330 + 21540570 AGATGATTCAAAACTATCCAAAATTCCCGAATATGTGTTTTTAAGACGTT-TGACA--ACAGTCAATTGTAacta-ttttttgtgattttcggtAACGAACTTTCGGATAAGGCAAGAGAGGATAGAAATTATTTTAGTTCTGAATTCTGATTTCGaggaaaaaact---caaaaacacaCTTTCTCGTTTTTATCATTAGACATCACATATGTATATCATACAA---CATGT--TTAATCAATCGGACAAGTATGAACATTATGTAG---TGTCAAGGG---AATTGTAA--CTCTAGCTTAATgtgttttccaaaaacaaaatcatacacccaattttcacaaaaatc--------------------
i cb4.chrX              I 39 C 0
s caeSp111.Scaffold514   100582 232 +   141934 cggtttttcttcatctctcCAAAACTTCGAGCTTTCTGAATTGTTACATT-TGACG-----------AGGA------TTGTTGCTACTTT---------------------------------TACAAATCAGCTCA--------------------------AAAT---CAA----GCAACGTTTTGGTACAATCATC----------------TATAGAGCAAGTCCGACTGCCTATTATTTCTCAGAAGCAC-----TTTTCtacctttttcaaaaa---aa----aa--ccgcaGATTTAAGCTATTTACA-------------------AGTCTTT-CGTTTATT----AATGATGTGAACTTAC
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470119 182 +   783054 aaagttttcttaaCAGCTGAAAAACTCCAACTGTTCT------CTGCATTATAACA----------TCGTA------TCTTTGCCTCT---------------------------------------AATCACTACA------------------------------------------AATGTCTTATACCAA---------------------TATAGAATCA---TGATT--CTA-TGCATATAAAAAGAA-----------------TTTCAGGAATACAA----AA--CCACAGGATTGTAC--TTgaca-------------------aatttctgaaaatatc----tatGTT----------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   35214 107 +   115485 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=-4941.000000
s ce10.chrX             1497297 113 + 17718866 -------TATCACCTCTAAGCACCTTAAAAATTATCAAAATTCTTAGGAACTTT------ATTTTGGACGCAATATACGCGCTTTTTTAGTCTAAATATTAGCTTCCAAATAAAACCTACAATTTC------
s cb4.chrX               713055 109 + 21540570 gatcACTTGGAATCAGTTAGTAAc------------------ctcaaacatttttgaattactgcTGCCGTAGCATTAA----TTTATAGATTCAAC-TTAATGTCAggtaaaataagaaaatttaaagttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   100814 107 +   141934 -------TAGAATTGGTAAGTAGCT---GTATCGCTAGTATGTTTGGACACTTTCATACAATTGCT--Cgtaaaaataggggtttttcaga--------taattttccaaaaaatggataaattttc-----
i caeSp111.Scaffold514  C 0 I 47
e caePb3.Scfld02_62      470301   0 +   783054 C
e caeJap4.Scaffold16506   35214 107 +   115485 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=411.000000
s ce10.chrX             1497410 51 + 17718866 AAATTTCGTTCAAATTTTGAA-------CAAGATTAATTATTTTTATTTTTCTGGCAA
s cb4.chrX               713164 55 + 21540570 agattt--ttcaattatcgAATGTTCTTCgtaattcatt-ttttagttGTTCTCTCCA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      470301  0 +   783054 C
e caeJap4.Scaffold16506   35214 107 +   115485 I
e caeSp111.Scaffold514   100921 47 +   141934 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=-3171.000000
s ce10.chrX             1497461 57 + 17718866 ATC---------GCCTGAGTTGAGCTGACTTCTA---AACAAC------AAAATTATTCAAAAAAGGTGCGGCTG
s cb4.chrX               713219 51 + 21540570 ------------GTCTGCACCAAAATAACTTTCATGTGTGAACTCAA--ATtacaaattgaaaac----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   100968 64 +   141934 ATTGCATAACATGACCCGATTAAAAATGCTGTCA-GCAATAATTTGATCGtaatcatttaaaaaa----------
i caeSp111.Scaffold514  I 47 C 0
e caePb3.Scfld02_62      470301  0 +   783054 C
e caeJap4.Scaffold16506   35214 107 +   115485 I
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=1091.000000
s ce10.chrX             1497518 6 + 17718866 TGTATC
s cb4.chrX               713270 6 + 21540570 tgtaaa
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold514   101032 6 +   141934 tgtttc
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506   35321 6 +   115485 TGTATG
i caeJap4.Scaffold16506 I 107 C 0
e caePb3.Scfld02_62      470301 0 +   783054 C
e caeRem4.Crem_Contig24  955484 516 -  1162296 I

a score=-258.000000
s ce10.chrX             1497524 19 + 17718866 TAGCTCAAAATCAAAAATA
s cb4.chrX               713279 13 + 21540570 ------cggaatccaaaaa
i cb4.chrX              I 3 I 3
s caeRem4.Crem_Contig24  956000 13 -  1162296 ------tagataaaaataa
i caeRem4.Crem_Contig24 I 516 I 4
s caeSp111.Scaffold514   101038  9 +   141934 ----------ttacaaata
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506   35327 19 +   115485 TAGCTacatataaaaaata
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      470301  0 +   783054 C

a score=18296.000000
s ce10.chrX             1497543 49 + 17718866 ACTCACCACTAT---------AACATCGGATCGTGTAGATTGCTCCGAACAAGGAAGC
s cb4.chrX               713295 48 + 21540570 -ctcaccaCTAA---------AGCATCGGATTGTAAACACAACTCCAAATAGTTTTGC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24  956017 49 -  1162296 actcACCACTGT---------AGCATCGGATTGTGAAGATTACTCCAACGAGGGATGC
i caeRem4.Crem_Contig24 I 4 C 0
s caeSp111.Scaffold514   101047 49 +   141934 tctgaaaactgtcgatttgaaaaaaacaagttgc----acaattcgaaaaaat-----
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      470301 49 +   783054 ACTCACCACTAT---------AACATCGAATTGTGTAGATGACTCCGAATAACGAGGC
i caePb3.Scfld02_62     C 0 I 214
s caeJap4.Scaffold16506   35346 46 +   115485 aattaccaCTAT---------AACATCGGATTGCATAAATGACTCCAACAAGTGA---
i caeJap4.Scaffold16506 C 0 C 0

a score=-5539.000000
s ce10.chrX             1497592 30 + 17718866 TGTGAGAATCAGAGCTCTGAGCATTTGA---AG
s cb4.chrX               713343 30 + 21540570 AATAACGAGAAGTTTGGTAAGCAACATT---AA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  956066 33 -  1162296 GGTCAGGATCAGCTTTGTGAGTAGCATTTTGAA
i caeRem4.Crem_Contig24 C 0 I 328
s caeSp111.Scaffold514   101096 25 +   141934 -----ggttcAGTTTGAAGAGTAGTCGG---AA
i caeSp111.Scaffold514  C 0 C 0
s caeJap4.Scaffold16506   35392 15 +   115485 ---CAAAGCCAGTTCAAG---------------
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      470350 214 +   783054 I

a score=-1822.000000
s ce10.chrX             1497622 17 + 17718866 TCTTGGGACTCTATGCC
s cb4.chrX               713374 14 + 21540570 CCTTGAA---TAATATc
i cb4.chrX              I 1 I 2
s caeSp111.Scaffold514   101121  7 +   141934 ----------TTATGTC
i caeSp111.Scaffold514  C 0 I 12
s caeJap4.Scaffold16506   35407 10 +   115485 CCTTGTGAGT-------
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      470350 214 +   783054 I
e caeRem4.Crem_Contig24  956099 328 -  1162296 I

a score=-788.000000
s ce10.chrX             1497639 8 + 17718866 AAAACTGA
s cb4.chrX               713390 8 + 21540570 aactctga
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig24  956427 8 -  1162296 aaaacaGA
i caeRem4.Crem_Contig24 I 328 C 0
s caeSp111.Scaffold514   101140 6 +   141934 aagaca--
i caeSp111.Scaffold514  I 12 C 0
s caeJap4.Scaffold16506   35417 6 +   115485 AACATT--
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      470350 214 +   783054 I

a score=-23975.000000
s ce10.chrX             1497647 155 + 17718866 AGCCAACAAAGTTTCTGAAAACACT---------CAAATGTGTAAGATGTATAAGTAAA------AGGTAT------------TCGATAGACACC------CTAACAAAAG-GGCAAATGTTCTCTTTTGTTGTTAGA------------GGGATATGCAAAGTGAGCAAGTTTGTG-TTCGG----AGCG---TCCC--ACAGTCCC--------CCG
s cb4.chrX               713398 181 + 21540570 aattca-attttttcacaaattactgtaaaaaaagaaaagaatcaG--GTGTAAGt---------aacaacaaaaatgttaGGGAGAAAGCCGCTGACCAGGTCACAATGGTGG-----------TATTATTCTTCGAAGAAAATAC---GGGGTAAGCAAAA-GAACGAGTATGTGCTCCAG----CGCGGGAACCC--TCT--CCTAGTTG---CCA
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig24  956435 172 -  1162296 AGCCC----CTTCCCAACAACCACT---------CAAATGTGTAAGCTGTATAAGTAAAATTGAGAACACTAAAAAGGTCATGTAGATAGACACC-----GGTAACAAAAG-AG-----------TCTTATTGTTAGCAGAAAACGA---GGGATATGCAA--------AGTGTGTGCTCCAG----CGCGGGAACCC--GCCAACCCAACTGACCCCA
i caeRem4.Crem_Contig24 C 0 I 3
s caeSp111.Scaffold514   101146 142 +   141934 --------------agaaaacaaCTTT-------CTACCG--------ATATG------------AGAAGTGCGAAGAAAATATAGATAAACACC-----AACAACAAAAG-AC-----------TCTTCTTGTAAGAAACAAA------AGGATATGCAAAGTGAGC-AGTGTGTGCTTCAG----AG-----ACCCTTTCTTTCCGAGTGA---CCA
i caeSp111.Scaffold514  C 0 I 1
s caePb3.Scfld02_62      470564 150 +   783054 ----------ttccaacaaaaacctCT-------CAAATGTGTAGGTTATTTGaccaaa------aagaatgaaagggTTATGTAGATAGACACC-----GGTAACAAAAG-AG-----------TCTTATTGTTCGGACGAGA--------GATATGCAAAGTGAGCAAGTATGTGCTCCAG----CGCGGGAACCC--------------A---CCA
i caePb3.Scfld02_62     I 214 I 1
s caeJap4.Scaffold16506   35423  75 +   115485 ------------------------------------------------------------------------------------------------------AAGCAATAA-AG-------------------TACAGAGGAAATGCGGGGAGATATTCAAAGTGAGTAAGTATGTCCTCCAAGAGCCGCGGAATCG----------------------
i caeJap4.Scaffold16506 C 0 C 0

a score=-1465.000000
s ce10.chrX             1497802 8 + 17718866 -GTGGGGAC
s caeRem4.Crem_Contig24  956610 6 -  1162296 -ACAGAa--
i caeRem4.Crem_Contig24 I 3 I 21
s caeSp111.Scaffold514   101289 8 +   141934 -TTAGAAAC
i caeSp111.Scaffold514  I 1 I 7
s caePb3.Scfld02_62      470715 8 +   783054 -TTAGAAGC
i caePb3.Scfld02_62     I 1 I 9
s caeJap4.Scaffold16506   35498 8 +   115485 GTGAGAGA-
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               713579 17 + 21540570 I

a score=40442.000000
s ce10.chrX             1497810 148 + 17718866 -----------------------------ACTGTATTTGCATTCCCTTTGCCGATACTATTCATTC---TTAGACCCCCTCCCTCCCT---------------------------ACGGTGCGGG--GAGAGGTAAAAGA------AGGAAGTGAGCAAATA----------GGGAGGTGAGCTCATTGTAAGAAGTCCACTTGATTA-----GGAGATTATTGTCACCA
s cb4.chrX               713596 179 + 21540570 -----------------------------ACTGTATTTGCA------TTGTCGCTGTTATTCATTTCACTTTCTCTCCTTCCGTCTTCTTCTAATTCCCTTGTCCAACGTGAGAGCCTTTTCGGGTGATGAAGTAAAAAGGGACGCCATA---GAGCAAACATTGCCAGG--------TTAGTCCATTGTATGAAGTCCACTTGATTA-----GAAGATTATTTTCACTG
i cb4.chrX              I 17 I 3
s caeRem4.Crem_Contig24  956637 168 -  1162296 -----------------------------aCTGTATTTGCG------TTGGCGATACTatgcattt---tctttcttcgtccctcctttcc----cttctttttcgaTGTGAGAGCCAATGCGGG---AGAGGTAAAAGG---------A---GAGCAAATAAGGACAAGAAAAGAGTTGAGCCCATTGTAAGAAGTCCACTTGATTA-----GGAGATTATTGTCACCA
i caeRem4.Crem_Contig24 I 21 I 18105
s caeSp111.Scaffold514   101304 175 +   141934 -----------------------------ACCGTATTTGCA------CTCACAATATT---CCTTT---TCTTGTgccttcccctttttctaa--CTCCTTTCCCGACGTGAGACACGCTGCGGT---AGAAG-GAAAGGGTTTGGTGGAGGTGAGTAAACAT-GATTAG--AAGAGTTCGGCTCATTGTTGGGAGTCCACTTGACTA-----GGAGATTATTGTCACCA
i caeSp111.Scaffold514  I 7 I 2224
s caePb3.Scfld02_62      470732 174 +   783054 -----------------------------ACTGTATTTACA------CTGGCGATACT---CTTTT---CTTCGTCCCTTCTTTTCTATCCAA-----CCTTCCGAATGTGAGACTCAATGCGGG---AGAGGTAAAAGGGGCCGGTAGAAGTGAGCAAATATGGAGTGT--AGGAGCTGAGCTCATTGTAAGAAGTCCACTTGATTA-----GGAGATTATTGTCACCA
i caePb3.Scfld02_62     I 9 C 0
s caeJap4.Scaffold16506   35506 184 +   115485 ACTCACCAGTCAGAAGCCTCCTTTGCTGAACAATATTTGCG------TTCGCGATACTATGCCG-----TCCCGCCTTTTCCTTTCTTTACAG----------------TGAGAACCTA---------AGAAAACGAACGGCTGAGTAGA---GAATAAACGGGGC------AAACAGTGGGC-CACAATGGGGTGTTCATTTGATTAGGTTTGGGTGTTTTTGGGATCA
i caeJap4.Scaffold16506 C 0 C 0

a score=-913.000000
s ce10.chrX             1497958 10 + 17718866 CCTCACTTTC
s cb4.chrX               713778 10 + 21540570 TGAAACTTGC
i cb4.chrX              I 3 I 10
s caePb3.Scfld02_62      470906 10 +   783054 ACAAACTTCC
i caePb3.Scfld02_62     C 0 I 4726
s caeJap4.Scaffold16506   35690  7 +   115485 -TTTATTT--
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514   101479 2224 +   141934 I
e caeRem4.Crem_Contig24  956805 18105 -  1162296 I

a score=217.000000
s ce10.chrX             1497968 23 + 17718866 CGGTAACCTACTTCGAAAAGATA
s cb4.chrX               713798 21 + 21540570 CAATAG--TACTTCGAAATGATA
i cb4.chrX              I 10 I 3004
s caeJap4.Scaffold16506   35697 17 +   115485 GGGTA------TTAGTAACAGTA
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      470916 4726 +   783054 I
e caeSp111.Scaffold514   101479 2224 +   141934 I
e caeRem4.Crem_Contig24  956805 18105 -  1162296 I

a score=1119.000000
s ce10.chrX             1497991 71 + 17718866 ACATAACGAAG------AAAAGAGATTTTAATTTTTAGTTTTTCAGAAATTTTTTTAAAATGAACAGCATCAGTCAA
s caeJap4.Scaffold16506   35714 77 +   115485 ACACAATGAAATTTTTCTactgaaattgtagtttttttttttcaatatttcactTGAAAATATACCTTTTCGATCAA
i caeJap4.Scaffold16506 C 0 I 4001
e caePb3.Scfld02_62      470916 4726 +   783054 I
e cb4.chrX               713819 3004 + 21540570 I
e caeSp111.Scaffold514   101479 2224 +   141934 I
e caeRem4.Crem_Contig24  956805 18105 -  1162296 I

a score=0.000000
s ce10.chrX             1498062 2106 + 17718866  
e caePb3.Scfld02_62      470916 4726 +   783054 I
e caeJap4.Scaffold16506   35791 4001 +   115485 I
e cb4.chrX               713819 3004 + 21540570 I
e caeSp111.Scaffold514   101479 2224 +   141934 I
e caeRem4.Crem_Contig24  956805 18105 -  1162296 I

a score=454.000000
s ce10.chrX             1500168 14 + 17718866 AAAAAACATCTTCA
s caePb3.Scfld02_62      307881 14 -   783054 aaaaaccaaattaa
i caePb3.Scfld02_62     n 4726 C 0
e caeJap4.Scaffold16506   35791 4001 +   115485 I
e cb4.chrX               713819 3004 + 21540570 I
e caeSp111.Scaffold514   101479 2224 +   141934 I
e caeRem4.Crem_Contig24  956805 18105 -  1162296 I

a score=136.000000
s ce10.chrX              1500182 2 + 17718866 AT
s cb4.chrX              20824278 2 - 21540570 AT
i cb4.chrX              T 25214 C 0
s caePb3.Scfld02_62       307895 2 -   783054 ct
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    35791 4001 +   115485 I
e caeSp111.Scaffold514    101479 2224 +   141934 I
e caeRem4.Crem_Contig24   956805 18105 -  1162296 I

a score=-5245.000000
s ce10.chrX              1500184 84 + 17718866 CTATTTATTGATTT---TCAAAGCTCTATGA---TGAAGTATTACCAAAAA--AAAAA----GAAGCACAATTAAAA-GCATCGATTAATTTTCACA
s cb4.chrX              20824280 82 - 21540570 TTATTCACTGAATTTGCTATAATCATT-------TCGAATGttatataaaa--aataaatcgaaAGCAAGTTTAAAA---GTTAATTATTGTTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   189127 75 +  1162296 ----CTATTTAATTTTATTCAAGCACT-----------ATATCATAAAATAccaaaaaagcgaaa-----tttaGAATGCATGAATGATTATTT--T
i caeRem4.Crem_Contig24 n 18105 C 0
s caePb3.Scfld02_62       307897 87 -   783054 ---ataattt--tttattccaagcgctatgaaattccaaaattaccaaaaa--aaaagtctgaatgcaaGTAAAAAGCAGTTagatgaatgaga---
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    35791 4001 +   115485 I
e caeSp111.Scaffold514    101479 2224 +   141934 I

a score=-13213.000000
s ce10.chrX              1500268 61 + 17718866 AAAAAAACGGAAGAAGC----ACTAAAAAGCAAAGCC---ATGACTAGAACAT----------CTTCAAATTTAAAA-C
s cb4.chrX              20824362 64 - 21540570 --TAAAATGC-AGAAGCGGCGCCCTAACGGCAAA-----------TAAGATTTCGAACAAGTGTTCTACGAACAGaag-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   189202 47 +  1162296 AGTAAAGCGCTAGAAGC---------AAAGCAAC-----------TGGAATCT----------TCTCaggaattgaa--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       307984 48 -   783054 --aaaagcgCTATAAGC---------AAAGCAAC------------ACTACTT--AATCATGGTTATATGTAT------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    77090 61 -   115485 aaaaaaaaatagaaagc----attgaaaaaaaaatcctgaagcattaaaaattctaa------tttgAAGC--------
i caeJap4.Scaffold16506 n 4001 I 7
e caeSp111.Scaffold514    101479 2224 +   141934 I

a score=221108.000000
s ce10.chrX              1500329 298 + 17718866 GAATATCGAAAA------TTTTAACAGGCATTCTTAATGACATTGAAGCAGTCGTTATGGATAAGCCAGACACCTTCGACCTTCTTCCAGATCTGAAGATAAGCTCCCGATTCGCGACCTTTAGTGCCGTCCAGGTGATAGCTTCCTCTTTCGAACGCCCAGTCGCCACCTCCGTTCACCTCCTCGGTGATGATCTGAA---AGA-GCAAG---------GTTTATATGTATAC------------GGGCTC----TAGTGGAAACTCACTTGAGCAGTCTGAACTCCGTCGGCCATGTCTTCTTTGAAGTAGGCTTCGATTCCT---------AAAATGAT
s cb4.chrX              20824426 304 - 21540570 ----agttttca------atttagcaGGCATTCTTGATGACATTGAAGCAGTCATTATGAATGAGCCAGACTCCATCGACCTTCTTCCAGATTTGGAGATACGCACCGGATTCGCGTCCCTTAGTACCGTCCAGATGATAGCTTCCTCTTTCAAAAGCCCATTCACCACCTCCGTTCACCTCTTCGGTGATGATCTGAAATCAAA---------------TTCTTAATTTGAAT------------ATTCTCCTCACAG-CCAAACTCACTTGAGCGGTCTGAACTCCATCGGTCATATCTTCTTTGAAGTAAGCCTCAATAcctgagaaaaacaaaaatga
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24   189249 298 +  1162296 ---------ttg------aattagCAAGCATTCTTGATGACGTTGAAGCAGTCGTTGTGAATGAGCCAGACACCATCGACCTTCTTCCAAATTTGGAGATACGCTCCAGATTCACGTCCCTTAGTACCATCCAAATGGTAGCTTCCTCTCTCGAAAGCCCAATCACCGCCTCCGTTGACTTCTTCCGTGATGATCTAA----AAA---------------TTCTCTGATAGAATTGctaggaaaaaagtttc--------caaaactCACTTGAGCAGTTTGGACTCCATCAGCCATATCCTCCTTGAAATAGGCCTCAattcct--ggaaaatgaaaatat
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514     38647 295 -   141934 --gattttcaaa------aattagcaAGCGTTTTTGATAACGTTGAAGCAATCATTATGAATGAGCCAGATTCCAtctacttttttccagaCTTGAAGATAAGCTCCTGATTCGCGTCCCTTGGTACCATCCAAGTGATAACTGCCTCTTTCGAAGGCCCAGTCACCTCCGCCATTAACTTCTTCAGTTATGATCTAAA---ACA---------------TTGTCAGATGGTAT------------TGTTTCATTACAGGGAAGGCTTACTTGAGCAGTCTGAACTCCATCCGCCATATCTTCTTTGAAGTAGGCTTCAATTCCT---------AAACGAAT
i caeSp111.Scaffold514  n 2224 I 3
s caePb3.Scfld02_62       308032 308 -   783054 ---TTGTAGAGA------AATCAGCAAGCGTTTTTGATGACGTTGAAGCAGTCGTTGTGAATGAGCCAGACACCATCGACTTTCTTCCAGATCTGGAGATACGCCCCAGATTCACGTCCCTTGGTTCCATCCAAGTGATAACTTCCTCTTTCGAAAGCCCAGTCACCTCCACCGTTCACTTCTTCGGTGATGatctgga---aga-aaaggaatttgGATATGTTCAGCGGGAT------------AAATTTGGTATGATGTCAACTTACTTGAGCAGTTTGAACTCCATCAGCCATGTCTTCTTTGAAGTAGGCCTCGATtcct---------aaaaatat
i caePb3.Scfld02_62     C 0 I 151
s caeJap4.Scaffold16506    77158 295 -   115485 GATTATTAAAAAGCAATTATTTAGCAGGCATTCTTAATGACATTGAAACAGTCGTTGTGAATAAGCCACACACTATCAACCTTCTTCCAAATCTGAAGATACGCGCCAGATTCTCTTCCCTTTGTGCCATCCAAATGATAGCTTCCTCTCTCAAAAGCCCAGTCTCCACTGCCGTTCACTTCTTCGGTGATGATCTGAAGATAGATGTAAG---------GGGTTATTTGGAGG------------AAATTC-----------ATCCTACTTGAGCAGTTTGAACTCCGTCGGCCATATCTTCTTTGAAGTAGGCTTCGATTCCT---------gg------
i caeJap4.Scaffold16506 I 7 C 0

a score=-14829.000000
s ce10.chrX              1500627 47 + 17718866 GTCACTTTTATGGTG-----CATCGGCTA-GAACTAAACCA-AATTGCTCAACA
s cb4.chrX              20824731 40 - 21540570 ttGATTTTTCTTATA-----TAATGTTTT-GAAc--------agatgaaaaaat
i cb4.chrX              I 1 I 3
s caeRem4.Crem_Contig24   189548 52 +  1162296 ttaagTTTCCGCGCAAcggtttttgttttcgaac--GACTataattgattattt
i caeRem4.Crem_Contig24 I 1 I 3
s caeSp111.Scaffold514     38945 32 -   141934 ACAAGTTT------------Tactgtta--aaaa--------atttgataattt
i caeSp111.Scaffold514  I 3 I 9
s caeJap4.Scaffold16506    77453  8 -   115485 ---------------------------------------------taataaga-
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       308340 151 -   783054 I

a score=133702.000000
s ce10.chrX              1500674 185 + 17718866 AATAAAAATAAATTTTTATCTTTTTCTATCTG------------------------A------------------------------------------CTCACCAGAACGCCCCTTCACCGGATTACGTCCATTTGGCATGAAATAACCATCCGGGTCATAGACAGATGCAGCTCCGGCGGCATCTCCGGCGTTGAACGCCTTCATAAAGTCCTGCTGACGGCCCTTGACTTCTTGGAATAGAGCTGGA-----A
s cb4.chrX              20824774 178 - 21540570 aatcaaaacAGT-------------ATATTT-----------------------TTA------------------------------------------CAAACCTGAGCGACCTTTCACTGGATTCCGTCCGTTTGGCATGAAGTAACCATCAGGATCATAAACCGACGCAGCTCCGGCAGCGTCGCCAGCGTTGAAAGCCTTCATGAAGTCTTGCTGACGTCCTTTGATTTCTTGGAATAGAGCTGAATAatga
i cb4.chrX              I 3 I 2
s caeRem4.Crem_Contig24   189603 191 +  1162296 aatcagaacTATT--CAAACACCTCACATTTG----------------TCCTAGTCA------------------------------------------CTTACCAGAGCGTCCTTTGACTGGGTTACGTCCGTTCGGCATAAAATAACCGTCCGGATCGTAGACAGACGCGGCTCCAGCGGCGTCACCAGCGTTGAACGCCTTCATGAAGTCTTGTTGACGTCCCTTGATTTCTTGGAACAAAGCTGGA-----A
i caeRem4.Crem_Contig24 I 3 I 69
s caeSp111.Scaffold514     38986 183 -   141934 TATGAAAATTTGC---------TTGGCTTCTG-----------------ACTAATTG------------------------------------------CTAACCTGAACGTCCTTTGACCGGGTTACGTCCATTTGGCATGAAATAACCATCCGGATCGTAAACAGAGGCAGCTCCGGCGGCATCTCCAGCATTGAATGCTTTCATGAAATCTTGTTGACGTCCTTTGATTTCTTGGAATAGAGCTAGA-----A
i caeSp111.Scaffold514  I 9 I 11
s caePb3.Scfld02_62       308491 249 -   783054 aatgtaaactttc--ccttttttttcctcttggagcaaaCATTAAGTGTACCTATTGATTTTGTTTTACTATctaaaaaaccttcaaaaaatgcaaaaactaacCGGAACGCCCCTTGACTGGGTTGCGTCCGTTTGGCATGAAGTAACCATCCGGATCGTAAACTGACGCAGCTCCAGCTGCATCTCCGGCATTGAAAGCCTTCATGAAGTCTTGTTGACGTCCCTTGATTTCTTGGaataaagctgaa-----a
i caePb3.Scfld02_62     I 151 I 7
s caeJap4.Scaffold16506    77461 185 -   115485 aaaaaaaatgtgt---------ttttttcatG---------------CCATAACTTT------------------------------------------CTTACCAGTACGTCCTTTGACCGGGTTACGCCCATTCGGCATGAAATAACCATCCGGGTCATAAACGGATGCGGCTCCAGCAGCATCTCCTGCATTGAATGCCTTCATGAAATCTTGTTGTCGGCTTTTTATCTCTTGGAATAgcgctgaa-----a
i caeJap4.Scaffold16506 C 0 C 0

a score=60.000000
s ce10.chrX              1500859 2 + 17718866 GT
s caeJap4.Scaffold16506    77646 2 -   115485 at
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       308740 7 -   783054 I
e cb4.chrX              20824952 2 - 21540570 I
e caeSp111.Scaffold514     39169 11 -   141934 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=-804.000000
s ce10.chrX              1500861 27 + 17718866 TGTTGCAA-----TTTTT--TTTTGGAT---TTTAGA
s cb4.chrX              20824954 26 - 21540570 -tttaaga-----atatttattccagat---tttt--
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_62       308747 29 -   783054 tgtcaggt-----tttttcattttgaat---ttttga
i caePb3.Scfld02_62     I 7 C 0
s caeJap4.Scaffold16506    77648 34 -   115485 ---taaaaggttctctttttttttaaatcgatttaga
i caeJap4.Scaffold16506 C 0 I 31
e caeSp111.Scaffold514     39169 11 -   141934 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=-1108.000000
s ce10.chrX              1500888 18 + 17718866 GCGTATGTTTTGTTTGAA
s cb4.chrX              20824980  9 - 21540570 -----ctaaatttc----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62       308776 18 -   783054 gcatgcaacatttttgaa
i caePb3.Scfld02_62     C 0 I 20
e caeJap4.Scaffold16506    77682 31 -   115485 I
e caeSp111.Scaffold514     39169 11 -   141934 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=109.000000
s ce10.chrX              1500906 73 + 17718866 AAAAACTGTATTGTTTAGTCAAAATT-----GAGCCCAACTGTTAAAG--TGCCAAAGTTTGGCAGTTTTGGTTATATAA
s cb4.chrX              20824989 75 - 21540570 --aaattagacT-TTTACTGGgactttaaaggaggccagacatgaaaattttccaaattgtaGT-GTTTTAA-TATATGA
i cb4.chrX              C 0 I 226
e caePb3.Scfld02_62       308794 20 -   783054 I
e caeJap4.Scaffold16506    77682 31 -   115485 I
e caeSp111.Scaffold514     39169 11 -   141934 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=0.000000
s ce10.chrX              1500979 194 + 17718866 ACAAGACGTCTGCCGAGGGGTAAGATTTTGATGAATTTGATGACTTATTATCTACACGAGTAGATATATCAAGTTGCCACTCTACTTAAAAAAAAATTCGACCGTCTGTAAGACGACTAAAACGGCCGTGACTTTGGAAAAACGGTGACTTATTTAGCAAAATTTTGGTAACGGATTAGCTACTGAAATATTAA
e caePb3.Scfld02_62       308794  20 -   783054 I
e caeJap4.Scaffold16506    77682  31 -   115485 I
e cb4.chrX              20825064 226 - 21540570 I
e caeSp111.Scaffold514     39169  11 -   141934 I
e caeRem4.Crem_Contig24   189794  69 +  1162296 I

a score=894.000000
s ce10.chrX              1501173 71 + 17718866 AATTTCCGTATTTTCAGATACTGGGGAACCATAAAAAGATTCTGAAACTGTAATTTCGCAAAGTGGAGATT
s cb4.chrX              20825290 63 - 21540570 attttttctgttttc--atgcggcgacatcATAGAATGACTGAATAACtaaaa------aaagttgggaat
i cb4.chrX              I 226 I 176
e caePb3.Scfld02_62       308794 20 -   783054 I
e caeJap4.Scaffold16506    77682 31 -   115485 I
e caeSp111.Scaffold514     39169 11 -   141934 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=0.000000
s ce10.chrX              1501244 104 + 17718866 TTTCAGGATCTTGGTAGCTCCAGCAACTCGGCATGCTATACAACTTTTGCAATTTTtcaggttaatttatattaggttattaggctatattaggttatattagg
e caePb3.Scfld02_62       308794  20 -   783054 I
e caeJap4.Scaffold16506    77682  31 -   115485 I
e cb4.chrX              20825353 176 - 21540570 I
e caeSp111.Scaffold514     39169  11 -   141934 I
e caeRem4.Crem_Contig24   189794  69 +  1162296 I

a score=127.000000
s ce10.chrX              1501348 6 + 17718866 tataat
s caeSp111.Scaffold514     39180 6 -   141934 TATaca
i caeSp111.Scaffold514  I 11 C 0
e caePb3.Scfld02_62       308794 20 -   783054 I
e caeJap4.Scaffold16506    77682 31 -   115485 I
e cb4.chrX              20825353 176 - 21540570 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=-1779.000000
s ce10.chrX              1501354 30 + 17718866 aggttattaAATTAATTCAAAAAAATCCTA--------
s cb4.chrX              20825529 36 - 21540570 aggtttc--gACCGAAACAAAAAACCCTTTTGTCTTGT
i cb4.chrX              I 176 C 0
s caeSp111.Scaffold514     39186 30 -   141934 agttttttaaattcaaatata-------ttcGTTATG-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       308794 20 -   783054 I
e caeJap4.Scaffold16506    77682 31 -   115485 I
e caeRem4.Crem_Contig24   189794 69 +  1162296 I

a score=-2341.000000
s ce10.chrX              1501384 3 + 17718866 ACC-
s cb4.chrX              20825565 3 - 21540570 -TTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   189863 3 +  1162296 -ACC
i caeRem4.Crem_Contig24 I 69 C 0
s caeSp111.Scaffold514     39216 3 -   141934 TTT-
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62       308794 20 -   783054 I
e caeJap4.Scaffold16506    77682 31 -   115485 I

a score=45917.000000
s ce10.chrX              1501387 478 + 17718866  
s cb4.chrX              20825568 492 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   189866 493 +  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     39219 468 -   141934  
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       308814 442 -   783054  
i caePb3.Scfld02_62     I 20 C 0
s caeJap4.Scaffold16506    77713 501 -   115485  
i caeJap4.Scaffold16506 I 31 I 20

a score=-2998.000000
s ce10.chrX              1501865 35 + 17718866 GTAACCTTTCCAATAACCCAGCTATTATCCCTCCC
s cb4.chrX              20826060 17 - 21540570 TTGCGC---------ACGTTGTGATT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24   190359 17 +  1162296 GCACAC---------ACATAATGATT---------
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     39687 15 -   141934 TCACG-----------TATAATGGTT---------
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       309256 17 -   783054 GCACGC---------ACATAATGATT---------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    78214 20 -   115485 I

a score=21017.000000
s ce10.chrX              1501900 52 + 17718866 ACCG------------GAAAACAATTACGGTAGGGTATA-AATGA---------AAAATTGCTTCCGCAGATTA
s cb4.chrX              20826077 49 - 21540570 -CCC------------GGAAACAATTATG---AGACATTCCTTGG---------GAAATTGTTTCCGCAAATTA
i cb4.chrX              C 0 n 0
s caeRem4.Crem_Contig24   190376 49 +  1162296 -CTG------------GGAAACAATTACG---GTAGATGTAATGA---------GAAATTGTTTCCGCAGATTA
i caeRem4.Crem_Contig24 C 0 I 2
s caeSp111.Scaffold514     39702 50 -   141934 --TG------------AGAAGGGATCATAGTCGGACatgtagaa----------aaaattgtttccgCAGATTA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       309273 52 -   783054 -CTG------------GGAAACAATTACGGTAGGGCACGTACAGC---------AAAATTGTTTCCGCAGATTA
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold16506    78234 73 -   115485 ATTGCAAGACAACGACGGAAGCAATTACA-TAAAATGTATGATAGCTGGGTGGTGCAATTGCTTCCGCAGATTA
i caeJap4.Scaffold16506 I 20 C 0

a score=2668.000000
s ce10.chrX              1501952 4 + 17718866 TTAT
s caeRem4.Crem_Contig24   190427 4 +  1162296 TTAT
i caeRem4.Crem_Contig24 I 2 C 0
s caeSp111.Scaffold514     39752 3 -   141934 -TAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62       309327 4 -   783054 TTAT
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold16506    78307 4 -   115485 TTGT
i caeJap4.Scaffold16506 C 0 n 0
e cb4.chrX              20826126 0 - 21540570 I

a score=-5763.000000
s ce10.chrX              1501956 16 + 17718866 ATTGCTATAAT-----------------------ATTGT--------------------
s caeRem4.Crem_Contig24   190431 59 +  1162296 ACatgtagaaatatgtagaaatatgtagaTAGTAATTGCTTTTATGTGAATCCAGATAT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514     39755 16 -   141934 GAATGTTGTAT-----------------------ATTGt--------------------
i caeSp111.Scaffold514  C 0 n 0
s caePb3.Scfld02_62       309331 27 -   783054 ACATGTTTAAT---------ATCTCTGGA---TAATTGT--------------------
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506    78311  0 -   115485 I
e cb4.chrX              20826126  0 - 21540570 I

a score=5567.000000
s ce10.chrX              1501972  99 + 17718866 -TTTTG-----TTGCGGAGGG-------CTGCATGTAAATAC-------CGGA------AAATGCC-AATGCA-----ATGTTTGATGTATTCCGGAAA---AAAAAAGAAAATATCGGGTGGTTTTGCACGTA
s caeRem4.Crem_Contig24   190490 120 +  1162296 -TTATG-----TGAGGGATAA-------TTGTg-gtaaacaaaaatgaagggaCAAGATAAGTGCCGGATACATTGCAATGTTTGATGTGACCCGGATATCTCAGAGAGTGAATAGCTTGGTGGTTTGCACGTA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       309358 121 -   783054 TTTATGTATTCTGAAGGAGAGTAATGGTTTGTG-GTAAACAA----GATCGGATAGGATAAACACCGGATGCA--------TTTGATGTGGTCCGGATATTTCAAAGAATAACTATCTTGAGGTTGCGCACGTA
i caePb3.Scfld02_62     C 0 n 0
e caeJap4.Scaffold16506    78311   0 -   115485 I
e cb4.chrX              20826126   0 - 21540570 I
e caeSp111.Scaffold514     39771   0 -   141934 I

a score=534.000000
s ce10.chrX              1502071 24 + 17718866 AAGAATCAGAATGTCTGTAATTTT
s caeRem4.Crem_Contig24   190610 23 +  1162296 AAGATGCAAAA-GTATGGTATTTT
i caeRem4.Crem_Contig24 C 0 n 0
e caePb3.Scfld02_62       309479  0 -   783054 I
e caeJap4.Scaffold16506    78311  0 -   115485 I
e cb4.chrX              20826126  0 - 21540570 I
e caeSp111.Scaffold514     39771  0 -   141934 I

a score=0.000000
s ce10.chrX              1502095 8198 + 17718866  
e caePb3.Scfld02_62       309479    0 -   783054 I
e caeJap4.Scaffold16506    78311    0 -   115485 I
e cb4.chrX              20826126    0 - 21540570 I
e caeSp111.Scaffold514     39771    0 -   141934 I
e caeRem4.Crem_Contig24   190633    0 +  1162296 n

a score=1687.000000
s ce10.chrX              1510293 284 + 17718866 GGTTTAAAAAAATTCAGAATAAACTTTTCAAGGTCAAAATTTCAAATATTTTTAGTGATTTTGTGTAAGCAAATCTTTTTTCGACTAAAAT-------TTGATCAATTTGAATAAGTTTTATAAAAT---TTTCTTAAAACAACCTTCCTGCCAATATTTTTTTAAAAACATTTCTTCGAGCTAACAGTGTAA-----------AAGCATCATAAATTCATTTCAAATTCAGAAAGAAAAACATTTACAAATAAGGTCAAGGAAAAATCATATTTCGATGAGAGGAGCACAGCACA-----------TTTACATTA
s caeRem4.Crem_Contig24   974910 282 -  1162296 GATATTAACGAATTTCAATGAAGCCTCCCAActaagaaaatttaaat---ttgaatgattttaagtttg---acatgattttaacgaaaataaataaataaataaatatatgtAATTGTCCTgaaatctatttttcgaaacgGAATT--TGCTaaaatttcaacagaaa--------------aacagTCTAACTTCCCGAAAAAAgcatcataattttattt---------agaGCAATGATTTGACAAGT--GGACAAGAGaaaa-agggttctgaaaaaagaaaccaagcaaaaaatgttatgatttgtatta
i caeRem4.Crem_Contig24 I 18105 C 0
e caePb3.Scfld02_62       309479   0 -   783054 I
e caeJap4.Scaffold16506    78311   0 -   115485 I
e cb4.chrX              20826126   0 - 21540570 I
e caeSp111.Scaffold514     39771   0 -   141934 I

a score=42.000000
s ce10.chrX              1510577 46 + 17718866 GAAATTTCAAAAAAAAAAAAAGAAACAAAT---TCCAAAAAAATTGGAT
s caeRem4.Crem_Contig24   975192 48 -  1162296 -aatttcaaagaaagtaaaaagctaaaTTTTGATTGAGTGGtgtcagaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62       475642 46 +   783054 gaaattagaaaaaaaaatatatatagtTTT---TTAATAGctttgaaat
i caePb3.Scfld02_62     I 4726 C 0
e caeJap4.Scaffold16506    78311  0 -   115485 I
e cb4.chrX              20826126  0 - 21540570 I
e caeSp111.Scaffold514     39771  0 -   141934 I

a score=711.000000
s ce10.chrX              1510623 20 + 17718866 GAAAAGCAGGGAGCATTTGA
s caeRem4.Crem_Contig24   975240 20 -  1162296 agaaaaatatgaacatttaA
i caeRem4.Crem_Contig24 C 0 I 24
s caePb3.Scfld02_62       475688 19 +   783054 acaaaaaatcgagCAATGA-
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506    39792 20 +   115485 gaaacataaaagacatttaa
i caeJap4.Scaffold16506 I 4001 C 0
e cb4.chrX              20826126  0 - 21540570 I
e caeSp111.Scaffold514     39771  0 -   141934 I

a score=339.000000
s ce10.chrX              1510643 6 + 17718866 CAGAGA
s caePb3.Scfld02_62       475707 6 +   783054 AAATGG
i caePb3.Scfld02_62     C 0 I 1
s caeJap4.Scaffold16506    39812 6 +   115485 aaaaga
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX              20826126 0 - 21540570 I
e caeSp111.Scaffold514     39771 0 -   141934 I
e caeRem4.Crem_Contig24   975260 24 -  1162296 I

a score=-31.000000
s ce10.chrX              1510649 1 + 17718866 G
s caeJap4.Scaffold16506    39818 1 +   115485 a
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62       475713 1 +   783054 I
e cb4.chrX              20826126 0 - 21540570 I
e caeSp111.Scaffold514     39771 0 -   141934 I
e caeRem4.Crem_Contig24   975260 24 -  1162296 I

a score=-3062.000000
s ce10.chrX             1510650 19 + 17718866 AAAAGAGAGAA----ACGGGAGA-----------
s cb4.chrX               716823 14 + 21540570 --agagaagaa-------aaaca-----------
i cb4.chrX              I 3004 I 5
s caeSp111.Scaffold514   103703 19 +   141934 aaaacgaagaa----ttaaaaaa-----------
i caeSp111.Scaffold514  I 2224 C 0
s caePb3.Scfld02_62      475714 21 +   783054 --AAGGAGGAAGGTCTTGAGACA-----------
i caePb3.Scfld02_62     I 1 C 0
s caeJap4.Scaffold16506   39819 27 +   115485 ---agcataaa----ctgaaatattacaggaata
i caeJap4.Scaffold16506 C 0 C 0
e caeRem4.Crem_Contig24  975260 24 -  1162296 I

a score=-29786.000000
s ce10.chrX             1510669 200 + 17718866 -GGGGGTACTGTA-----CTTTTTGCGTCG---TTTTCTC--AAGCAACAAGAGACCCGCGA-GAGCAGTGCT------------A---------------------AAAGGGAAAGTTTGTG-GAGAGC-----------AGCGAGAGAGATGAAGAG---AGAAA----------GATAGATGAAATAACTGAAAATG----TCTTAAAATTTCCGGAAAAAAAGTATGGTCTTATTTCTAACATAG------------AAAATACACAGTAAATTTTGAATTT
s cb4.chrX               716842 193 + 21540570 -TGTGCAACTGTA-----CTTT-TGCGTCG---TTTTCTC--AGATAACA--AAACCCGCAG-GAGCAGTgctatgaaaaagaaaaa-------------------gaaatggaatA------------------------AGCGTGAGAGGAGGAGA----AAAACTGAATTAGAGGAAGTTAGAAAGAAAACAGGACA----TTGTAAAACTGAATGTAGAGAA------T----TTTCTAATgtag-----------aaaaat----aaacatttttga--tt
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig24  975284 172 -  1162296 -GGTGGTACTGTA-----CTTTGTgcgtcgtttttttttc--aagcaaCA--AAACCCGCTG-GTGCAGTGCT------------AA-------------------AAAATGGAG-----------------------------ATGAGAGGACAGGG----AATAT----------GAagatggaaatgagaaattaga----ACTGAAAAGCGGAgggggggAA------TCTGGTTTCTAATATAG------------AAAGT----GGTAATTTTTCA---T
i caeRem4.Crem_Contig24 I 24 C 0
s caeSp111.Scaffold514   103722 160 +   141934 ---aagagcattAAACAGTATT-TGCGTC--ttttgtttcgaaagaaaTA--TGACCCGCAG-AAACAATGTT------------A---------------------GAAATGAg-----------------------------ataaaatacaaa------aaact----------gacAATTGAAAGCATGTATTG--------TTCACCATTTCGCAACGAGA------T----TTTCTAACATAG------------AAAAC----agcatttttt-----t
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      475735 149 +   783054 ---AGGTACATTA-----CTTT-TGCGTCGTTTTCCTTACGGAAAAAACA--AGACCCGCAGTCAGTAGTGCT------------GT-------------------TGAATagag-----------------------------atgaagaaagaagtcttgaaact----------ga-atttgaggaaa----------------------------aaagaaa------tctgatTTCTAacatag------------aaaat----tcaaattttt-----a
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   39846 222 +   115485 aagaaaagTTTGG-----ATTT-TGCGT----------------GCAACA--AAACCCGCGA-G---AATGCT------------AAAATTAAGATTCAAACAAtcgaaagagagagagtgtaTTGGAGCCTACCAATTTTTGAAtgggaaaatgaca----aaaat----------atgggtggaaaaactgaacaatgatatttagaaagaacaaaaaataaac------tcTTATTTCAAATATAgcttaagaaaaaaaaaat----gtaatgcttTAAATCT
i caeJap4.Scaffold16506 C 0 I 49

a score=-9914.000000
s ce10.chrX             1510869 41 + 17718866 CAAAAAA-------------AAAATTCAAGG------------------ATAAATTAGGACGGG----ACAAAA-AC
s cb4.chrX               717035 61 + 21540570 taaaaaaaagggaaagcaGCACAATGGGAAA-------TATGGGTGTTTAAAGTTTAGATTCGG----AA-----AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  975456 61 -  1162296 AAGAAAAGATGGACAACAGAAGGACACGAAA------------ACATTTGCAAGATAAGTTATG----AAAGGGGAA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   103882 71 +   141934 taaaa------gcaaagagaaaaagaaaaacaataatgaGAGAATGCAGATAAATTAAGTTATATGTAAGATGGGAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      475884 57 +   783054 caaaaaatttggcaaagacaaaagtaaaaaa--------------gcaCATAAATTAG-----ATGT-ATACGGGAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   40068 49 +   115485 I

a score=21007.000000
s ce10.chrX             1510910 21 + 17718866 AGATCAAAATGACACgaaaaa
s cb4.chrX               717096 21 + 21540570 AAGTCTGAATGACACGAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  975517 21 -  1162296 AGATCTGAATGACACGAACCA
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   103953 21 +   141934 AGATCGAAATGACACGAGAAG
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      475941 21 +   783054 AGATCAGAATGACACGAGAAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   40117 21 +   115485 AGATCGGAATGACACGAAAAA
i caeJap4.Scaffold16506 I 49 I 75

a score=-14918.000000
s ce10.chrX             1510931 32 + 17718866 agaaa------------------------aaaagaaaagaaaagaaTC-----------------AATAATT-----C
s cb4.chrX               717117 48 + 21540570 G--AACCATAAAAGCCAATA---------AGGAAACatataaagtttt-------------------caattgaaaCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  975538 55 -  1162296 A--AACAATGGGAG---------------GGGGGACGCAGGAAAATTCATTGATAACAG------GAAAATTTAAAGT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   103974 56 +   141934 ATTCACCACCAAATTCTGAAAGCGGTGAAGGAATACAAGTACA----------------------TAAAATTGGGGAT
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      475962 78 +   783054 ACAGACCACCAATGTCTAAAGTTGGTGGTGAAGGACAAGTAaagtgtctggaaaaaaagcgcgagcaaaagaagaagt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   40138 75 +   115485 I

a score=-12100.000000
s ce10.chrX             1510963 182 + 17718866 ATAAAGCTCGGC---------TTGAACTTGAAGAGCAGGAAGA-------------------------------------------------------G--CAACAAA--------------AAA--------ACACCGTTGA-ATATGTGGCAA-----------------------AATGT---GCGAGGAG-----CCGGGTTGATGGGTGGCGG------CTCAGACTTTTCCGA---ACCAGGTGA--CTTTGAGATATGAGCTGGGCACGAAACCATCCGCCGAGTTGTTTTCTCTGCAAAAATTAA-
s cb4.chrX               717165 240 + 21540570 ATAAAGCTCTGG---------TCGAACT---AGGACGGCAAAATAGAGAGTGACGTCATAGcgtaaaacaatt---tttactgGAATAGTTAGGGTACGAACGTCAAA---GGGAAAG----GCG--------ACACCGTTGA-G--TTTGGCAA--------------CAATTAAGAAGCGATGTATTAGAAT-----ATGGTTGAA----------------GGTAAATCTATTTGT---ACCACGTCG--TTTTCAAGTAGGAGCTAGGAACGAAGCCATCAGCAGAGTtgttttccctgaaaatttgaa-
i cb4.chrX              C 0 I 1385
s caeRem4.Crem_Contig24  975593 205 -  1162296 ATAAAGCTctggaaaacattttcgaacT------TCAGGAAAA------------------------------------ACTGGTAGGGT--GGGTAC---TGTCAAAATGGGGATAGTTATGTA--------ACACCGTTGT-GGATCTGGCAATT------------TGGGTAAGAAACGG---AAGAGCAT-----TTAGC-------------------------ACTGACTGGT---ataatattgaattttaagGTAGGAGCTGGGAACAAATCCATCGGCTGAGTTGTCACACCTGAAA----GAA-
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   104030 243 +   141934 GTAAA---CGGT---------TTGAA---------TAGGTGAA---------------TATCGGTATGAACTTGAGTTCAATTGCATGA---AGAAGCG--TATCAAA---AGGATTG----ACA-GATGAGAAAACCGTGAA-T--AGTGGCAATTGGGTTGTTGtaacagaaaagaaatac---gTGAGAACAAATATCAATCATAA--TTGATGT------TCTAGATTTTCCCGTCGAACCACGTCA--TTTTGAGGTATGAACTTGGAACGAAGCCATCTGCCGAATTGTTTTCTCTGTAA-----AA-
i caeSp111.Scaffold514  C 0 I 63
s caePb3.Scfld02_62      476040 223 +   783054 gtaAAGCTCGTT---------TTGAACT-------CAGCGTGG---------------TATTGGTATGTATTC------------------------CG--GAAAAAA---GGGATAA----ACATGGGGCGAACACCGTTAGTT--TGTGGCAAAAGGATGGTagagaaaacaaggaaaatg---gTTAAGAT-----TGAAGTGTAC--GTGGTG-------GCTAGACTCTTCCGTCGAACCACGTCG--TTTTGATGTAGGAACTTGGTACGAATCCATCGGCAGagttgttttctctgaaa-----aa-
i caePb3.Scfld02_62     C 0 I 86
s caeJap4.Scaffold16506   40213 214 +   115485 ATAAAGCTCGGG---------TTGAACT-----TGCAGGTGGT-------------------------------------------------TGGATTg--agtttga---aaga-------aaa--------acaccGTCAA-A--TGTGGCaattaatattaaaaaacgTAAATATAATCG---ATGGCTGT-----TGATATGAGCGGTTATCGTAAGATAGTCCAATGCTCCTTTAATACCAAGTTG--GTTTGAGATACGAGCTGGGCACAAATCCGTCCGCAGAGTTATTTTCTCTGAAA----TAAC
i caeJap4.Scaffold16506 I 75 C 0

a score=0.000000
s ce10.chrX             1511145 6 + 17718866 GTATAA
e caePb3.Scfld02_62      476263 86 +   783054 I
e caeJap4.Scaffold16506   40427 0 +   115485 C
e cb4.chrX               717405 1385 + 21540570 I
e caeSp111.Scaffold514   104273 63 +   141934 I
e caeRem4.Crem_Contig24  975798 0 -  1162296 C

a score=-13128.000000
s ce10.chrX             1511151  98 + 17718866 AAATTTGATAGTTTG--GGAAATTGACCATTTTGTGGGTCCCTGTTTCAA----ATTGGCCCAAGAACCACG---CCCACATAATGGCCGTAACCATCTCCTAAACA--
s caeRem4.Crem_Contig24  975798  30 -  1162296 -----------CTCG----------------------------TTTTTAG----------TTAGGAACTTCA----------------------------CTTAAAA--
i caeRem4.Crem_Contig24 C 0 I 1
s caeSp111.Scaffold514   104336 106 +   141934 CAAATAAATTGTTCGGCGAAAGATCAACATTTtggaaactattttttcagaagcaaTGTCTCAAAAACTTTGTAAGATAGA-AATGATTATGttcctgtttttcaaa--
i caeSp111.Scaffold514  I 63 I 8
s caeJap4.Scaffold16506   40427  37 +   115485 -------------------------gaccttttg---------tttttga----------tttaaaattaaa----------------------------acaaaaaaa
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      476263  86 +   783054 I
e cb4.chrX               717405 1385 + 21540570 I

a score=-1104.000000
s ce10.chrX             1511249 2 + 17718866 AA-
s cb4.chrX               718790 1 + 21540570 -a-
i cb4.chrX              I 1385 I 1
s caeRem4.Crem_Contig24  975829 1 -  1162296 -A-
i caeRem4.Crem_Contig24 I 1 I 1
s caeSp111.Scaffold514   104450 2 +   141934 CA-
i caeSp111.Scaffold514  I 8 C 0
s caeJap4.Scaffold16506   40464 2 +   115485 -ag
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      476263 86 +   783054 I

a score=117106.000000
s ce10.chrX             1511251 175 + 17718866 AAAAACTCACTTTCTCACACGGGTCCATCCATCGCCTTCGTCCTTCTCAATCAGCCACAGCTTCTCGTTCGCCTCCATGCGAATCGTTCCATCTTGAGCTCCGTCAAATGCGAATTGAGCAATTGCTTCACCGAGCACCGGG---TTAGGATTGGAG--CATTCTTCGTAGAGCTGAAAA
s cb4.chrX               718792 169 + 21540570 AAATTCTTACTTTCGAACTCTAGTCCATCCATCTCCTTCGTCTTTTTCAATCAACCACAGCTTTTCATTGGGGTCCATGCGGATAGTTCCATCCTGAGATCCATCGAAAGCGAACTGAGCAATTGCTTCACCAAGAACCGGG-----------GGAGCACATTCCTCGTATAGCTGAAAA
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig24  975831 178 -  1162296 TGCAACTCACTTTCTCACTCTGGTCCATCCATCTCCCTCGTCTTTCTCGATAATCCATAACTTTTCATTTGAATCCATCCGGATCGCACCATCTTGTGCACCATCAAAAGCAAACTGAGCAATTCCTTCTCCGATAATTGGGTTGGGCGGGTTGGAG--AGTTCCTCGTACATCTGAGAA
i caeRem4.Crem_Contig24 I 1 I 1
s caeSp111.Scaffold514   104452 169 +   141934 ATATGCTTACTTTCGGACTCTTGTCCAACCGTCGCCCTCGTCTTTCTCAATAAGCCACAACCTTTCGTGTGCTTCCATACGAATTGTACCATCCTGCTCTCCATCAAACGCAAACTGGGCAGTTGCTTCGCCAAGAACCGGT-----------GGGGTTAGCTCATCATAAACCTGGAAA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      476349 169 +   783054 AAAAACTTACTTTCTAACTCTCGTCCATCCATCACCTTCATCTTTCTCTATAAGCCATAATTTTTCGTTAGCTTCCATTCTGATCGTTCCTTCTTGTGCTCCATCGAATGGGAAAAGTGCTAACGCTTCTCCGAGAACTGGC-----------GGCGTCAACTCGTCGTAGACCTAAGAA
i caePb3.Scfld02_62     I 86 I 40
s caeJap4.Scaffold16506   40466 175 +   115485 aaacactcACTTTCGAACTCTGGTCCAGCCGTCACCTTCGTCCTTCTCGACTAACCACAACTTTTCCATAGCTTCCATTCGTATAGTTCCTTCTTGCGATCCATCAAACGAAAATTGAGCTATAGCTTCACCAAGCACAGGA---TTTGGGTTGGAA--CATTCCTCGTAGAGCTACAAC
i caeJap4.Scaffold16506 C 0 C 0

a score=273.000000
s ce10.chrX             1511426 1 + 17718866 A
s caeSp111.Scaffold514   104621 1 +   141934 A
i caeSp111.Scaffold514  C 0 I 367
s caeJap4.Scaffold16506   40641 1 +   115485 A
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I
e cb4.chrX               718961 1 + 21540570 I
e caeRem4.Crem_Contig24  976009 1 -  1162296 I

a score=273.000000
s ce10.chrX             1511427 1 + 17718866 A
s cb4.chrX               718962 1 + 21540570 A
i cb4.chrX              I 1 I 137
s caeJap4.Scaffold16506   40642 1 +   115485 A
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I
e caeSp111.Scaffold514   104622 367 +   141934 I
e caeRem4.Crem_Contig24  976009 1 -  1162296 I

a score=273.000000
s ce10.chrX             1511428 1 + 17718866 T
s caeRem4.Crem_Contig24  976010 1 -  1162296 T
i caeRem4.Crem_Contig24 I 1 C 0
s caeJap4.Scaffold16506   40643 1 +   115485 T
i caeJap4.Scaffold16506 C 0 I 706
e caePb3.Scfld02_62      476518 40 +   783054 I
e cb4.chrX               718963 137 + 21540570 I
e caeSp111.Scaffold514   104622 367 +   141934 I

a score=561.000000
s ce10.chrX             1511429 18 + 17718866 CGGAGAAAATTAAGTGTA
s caeRem4.Crem_Contig24  976011 18 -  1162296 GGCAGAGatttaaattta
i caeRem4.Crem_Contig24 C 0 I 254
e caePb3.Scfld02_62      476518 40 +   783054 I
e caeJap4.Scaffold16506   40644 706 +   115485 I
e cb4.chrX               718963 137 + 21540570 I
e caeSp111.Scaffold514   104622 367 +   141934 I

a score=0.000000
s ce10.chrX             1511447 699 + 17718866  
e caePb3.Scfld02_62      476518  40 +   783054 I
e caeJap4.Scaffold16506   40644 706 +   115485 I
e cb4.chrX               718963 137 + 21540570 I
e caeSp111.Scaffold514   104622 367 +   141934 I
e caeRem4.Crem_Contig24  976029 254 -  1162296 I

a score=191.000000
s ce10.chrX             1512146 2 + 17718866 CA
s caeSp111.Scaffold514   104989 2 +   141934 CA
i caeSp111.Scaffold514  I 367 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I
e caeJap4.Scaffold16506   40644 706 +   115485 I
e cb4.chrX               718963 137 + 21540570 I
e caeRem4.Crem_Contig24  976029 254 -  1162296 I

a score=273.000000
s ce10.chrX             1512148 1 + 17718866 A
s cb4.chrX               719100 1 + 21540570 A
i cb4.chrX              I 137 C 0
s caeSp111.Scaffold514   104991 1 +   141934 A
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I
e caeJap4.Scaffold16506   40644 706 +   115485 I
e caeRem4.Crem_Contig24  976029 254 -  1162296 I

a score=684.000000
s ce10.chrX             1512149 3 + 17718866 ACA
s cb4.chrX               719101 3 + 21540570 AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  976283 3 -  1162296 ACA
i caeRem4.Crem_Contig24 I 254 C 0
s caeSp111.Scaffold514   104992 3 +   141934 ACA
i caeSp111.Scaffold514  C 0 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I
e caeJap4.Scaffold16506   40644 706 +   115485 I

a score=422.000000
s ce10.chrX             1512152 1 + 17718866 T
s cb4.chrX               719104 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  976286 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   104995 1 +   141934 C
i caeSp111.Scaffold514  C 0 I 2
s caeJap4.Scaffold16506   41350 1 +   115485 t
i caeJap4.Scaffold16506 I 706 C 0
e caePb3.Scfld02_62      476518 40 +   783054 I

a score=340341.000000
s ce10.chrX             1512153 626 + 17718866  
s cb4.chrX               719105 611 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  976287 617 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 37
s caeSp111.Scaffold514   104998 608 +   141934  
i caeSp111.Scaffold514  I 2 C 0
s caePb3.Scfld02_62      476558 605 +   783054  
i caePb3.Scfld02_62     I 40 C 0
s caeJap4.Scaffold16506   41351 614 +   115485  
i caeJap4.Scaffold16506 C 0 C 0

a score=898.000000
s ce10.chrX             1512779 3 + 17718866 TTT
s cb4.chrX               719716 3 + 21540570 ttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold514   105606 3 +   141934 ttt
i caeSp111.Scaffold514  C 0 I 230
s caePb3.Scfld02_62      477163 3 +   783054 cca
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   41965 3 +   115485 ttt
i caeJap4.Scaffold16506 C 0 I 68
e caeRem4.Crem_Contig24  976904 37 -  1162296 I

a score=-517.000000
s ce10.chrX             1512782 4 + 17718866 GAAA--
s cb4.chrX               719719 4 + 21540570 taaa--
i cb4.chrX              C 0 I 30
s caePb3.Scfld02_62      477166 4 +   783054 --aaca
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   41968 68 +   115485 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  976904 37 -  1162296 I

a score=-3762.000000
s ce10.chrX             1512786 367 + 17718866 CGTATAGGTTTTTGGAAATAGGTTCGCACAATCTATCTAAAATGTTCTGCTTTACTTTTTTCGCATACCTTGTTTGAGCTCCAAAAACaaattttttcaatttttaatttttaattaaaaaaGACACAGTCTTCTAGGAACAGAAAATCATTCCGAGATTCCAAAAAAAAAGAAAAAATAGTCACAAATTTTTCAGTTCGACTGAGCGCAGTTGAGCGCTATTGCGTATCACATTTTTTTGATAAGCTTAACCTAAGATAAGCTTAACCTATAAGATTTGAATGTACTTTAGTCAACaaaattaattattttattttattttttCACGTTGAAGGCTACTTTTTCCCCAGAAATTTTCCACTCAATG
s caePb3.Scfld02_62      477170 227 +   783054 aattta-attctgagcaacgcGGTTGTGCTGTTT-TATAAGAGCTTTAGATATATATTTT---------CTGGTTGAGCGCTA---------CTTATCTGTATCTAGT-----AATAGACGAGTAACGTTCC-------ATCGAaacggattttg-------------aaaaaaaaaatactcgaaGA--------------------AAGTTG---TTTATGCTGTAT--TATTCTGTCAGAAAACTGAGC--------AGCGCAACCTCCTATGACTGa-----------------------------------tattgttt---------------------------gatttttcatataaaa
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   41968  68 +   115485 I
e cb4.chrX               719723  30 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  976904  37 -  1162296 I

a score=145.000000
s ce10.chrX             1513153 2 + 17718866 CT
s cb4.chrX               719753 2 + 21540570 CT
i cb4.chrX              I 30 C 0
s caePb3.Scfld02_62      477397 2 +   783054 CA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   41968 68 +   115485 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  976904 37 -  1162296 I

a score=3103.000000
s ce10.chrX             1513155 43 + 17718866 TACCCATGGATCCAGCTGGTCCCGACGCGCCACCTCCCATAAA
s cb4.chrX               719755 31 + 21540570 CACCAATTGAACCAGCG------------CCACTTCCGGCGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  976941 31 -  1162296 TACCAATCGATCCGCCT------------CCACCTCCAGCCAA
i caeRem4.Crem_Contig24 I 37 C 0
s caePb3.Scfld02_62      477399 28 +   783054 AACCTGTAGAACCACCT------------CCACTACTG---AG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   41968 68 +   115485 I
e caeSp111.Scaffold514   105609 230 +   141934 I

a score=55066.000000
s ce10.chrX             1513198 159 + 17718866 ----CGAAGACCGATCCTGTGGATGTCCCAGATCTTCAAAGACGAACGGCTGAGGCACAGGATGTCCCGACTTCATATTCTCCACCACCAGGTTCGCATCACGCGATGGATCGATTAGGCCAATGTCACGTCGCATGTCGTTGTGGCAGCTTGCTGA-------AAAATT
s cb4.chrX               719786 160 + 21540570 ----GAAAG------TTTTTGGATTACCCAtgtcttcaaaaatgaatgggAGCGGTCGCGGATGACCCGATTTTAAGTTTTCCACCACCAAGTTGCCATCCTTGACaggatcaattttttcaatatctttcctCATGTCGTTGTGACAGCTTCCTGAACAcgcaaaaatt
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig24  976972 152 -  1162296 ----GAAAG------TTTTCGGGTTGCCCATATCTTCGAATGCAAATGGTGCAGGACGTGGATGTCCTGACTTCAAATTCTCCACCACCAAGTTTGCATCACGCACTGGGTCGATCTTAGCAATGTTGTGACGCATGTCGTTATGGCAACTAGCTG--------aaagtt
i caeRem4.Crem_Contig24 C 0 I 36
s caePb3.Scfld02_62      477427 152 +   783054 ----GAAAG------TATGTGGATGTCCAAGGTCTTCGAAGACGAAAGGCTGTGGACGTGGATGACCAGACTTCATGTTCTCAACTACTAAAGCAGCATCACGACCCGGATCGATTGCAGCAATGTCTCTTCTCATATCATTATGACAacttgctgaa------aaaa--
i caePb3.Scfld02_62     C 0 I 5
s caeJap4.Scaffold16506   42036 156 +   115485 CGAGGAATG------ATTGCGGGTGTCCGAGATCTTCGAAAATGTAGGGTTGTGGGCGAGGGTGCCCAGATTTCAGATTTTCAACGACAAGATTCGCATCTCGATTTGGATCAATCAAGGAAATATCTCGACGCATATCATTATGACAACTAGCTGA-------AAAGT-
i caeJap4.Scaffold16506 I 68 C 0
e caeSp111.Scaffold514   105609 230 +   141934 I

a score=0.000000
s ce10.chrX             1513357 5 + 17718866 ATTTT
e caePb3.Scfld02_62      477579 5 +   783054 I
e caeJap4.Scaffold16506   42192 0 +   115485 C
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=-351.000000
s ce10.chrX             1513362 15 + 17718866 GAACGGTAAGACTGT
s caePb3.Scfld02_62      477584  7 +   783054 ga--------tttat
i caePb3.Scfld02_62     I 5 C 0
s caeJap4.Scaffold16506   42192  5 +   115485 ----------ATTGT
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=577.000000
s ce10.chrX             1513377 19 + 17718866 TCGAAAGAAAAGCGGACGG
s caePb3.Scfld02_62      477591 19 +   783054 tttgcAGAAAAGCCAACTG
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   42197  0 +   115485 C
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=0.000000
s ce10.chrX             1513396 101 + 17718866 gatagctcagtcggtagtggtggccgctagcaagctgggggtcacaagttcaagccgggccacccccacggaccacccagtctctattggaaagtgaagta
e caePb3.Scfld02_62      477610   0 +   783054 C
e caeJap4.Scaffold16506   42197   0 +   115485 C
e cb4.chrX               719946  26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124  36 -  1162296 I

a score=455.000000
s ce10.chrX             1513497 5 + 17718866 attta
s caeJap4.Scaffold16506   42197 5 +   115485 ATTTA
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      477610 0 +   783054 C
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=0.000000
s ce10.chrX             1513502 103 + 17718866 tgactggccacccagctaggacgtggcttaaattatagcccagtgggatccttcccctgtgccgggattccctgatccgcagtgcatagcgcttgaagaacgg
e caePb3.Scfld02_62      477610   0 +   783054 C
e caeJap4.Scaffold16506   42202   0 +   115485 C
e cb4.chrX               719946  26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124  36 -  1162296 I

a score=-11.000000
s ce10.chrX             1513605 8 + 17718866 atcgtcct
s caeJap4.Scaffold16506   42202 8 +   115485 ATTTTGCG
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      477610 0 +   783054 C
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=-4207.000000
s ce10.chrX             1513613 81 + 17718866 tcaaAAATAGTGACCGTACTAGAAACGGAAACAATTTTGTAACTTGTAAGCCCGACAATTTCTGGTTCCCATAAAACCACC
s caePb3.Scfld02_62      477610  7 +   783054 TTAAAAA--------------------------------------------------------------------------
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   42210 32 +   115485 ttaaaaa----------------------------tatgtatgtagATCGCAAAATAATT---------------------
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=-95.000000
s ce10.chrX             1513694 5 + 17718866 TTTTT
s caeJap4.Scaffold16506   42242 5 +   115485 ACATT
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      477617 0 +   783054 C
e cb4.chrX               719946 26 + 21540570 I
e caeSp111.Scaffold514   105609 230 +   141934 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=546.000000
s ce10.chrX             1513699 1 + 17718866 A
s caeSp111.Scaffold514   105839 1 +   141934 A
i caeSp111.Scaffold514  I 230 C 0
s caePb3.Scfld02_62      477617 1 +   783054 A
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   42247 1 +   115485 A
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               719946 26 + 21540570 I
e caeRem4.Crem_Contig24  977124 36 -  1162296 I

a score=232683.000000
s ce10.chrX             1513700 332 + 17718866 CTCACCAATAATCTGATTAACACAAGACTCGGCCTCAACACACTTGCTCAAAATCTCCACCGTATCCAGGATCCGATTTGTGTGCAGCTTCTTATAATTATCCAAGAGTTGTGGGAGTTTCCGGTCATAGTGTGCCGATTGTTCCTCGTTCGCTTTTGTAGTCATTACTGCATAAGTCTGCTTGGACTCTTCCAGCATTCCACACTTTTGTTGGTAGTTGTTCTTGGTTTTTTCCAGTTCTAAACGTGAGATGTCCATGTTCTTCTCGGCTTTTGCATATTTCAGCATGGCGGCTTCGGTTTCTTTGTAGCATTTTCTGGAAAAAACAA------------------GAT
s cb4.chrX               719972 333 + 21540570 CTTACCAATGATAGGATGCACACTCGACTCGGCTTCTACGCATTTATTGAGAATCTCAACGGTGTCGAGAATTCTGTTCGTATGAAGCCGTCTATAGTTTTCCAACAGTTGTGGAAGCTTCTTGTCGTAGTGAATTGCTTGTTCTTCATTTGCTTTTGTCGTCATAACCGCATAAGATTGTTTGGATTCCTCGAGCGATCCCAGTCTCACTTGGtagttattttttgttttctctagTTCCAGACGTGAAATCTCCATATTTTTCTCCGCCTTTGCGTACTTCAGCATTGCTGCTTCCGCTTCCTTGAACTGTTTGCTATAAAAAGAAAT-----------------GGT
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig24  977160 350 -  1162296 CTTACCAATAATAGAAATAACACTAGCCTCTGCTTCTACAACCTTATTGAAGAGCTCCACGGTGTCGATGATTCTATTGAAATGCAATTTCTTGTAATTCTCTAGCAGTTGCGGAAGTTTCTTGTCAAAGTGTGCCGCTTGCTCCTCATTAGCCTTGTGTGTCATTGCAGCGTAGGTCTGTTTCGACTCTTCCAGCATTCCGCATTTCACCTGGTAGttgttctttgttttctcGAGTTCCAAACGAGAAATCTCCATATTCTTCTCAGCCTTGGCGTATTTCAGCATGGCCGCCTCGGTCTCCTTGAaggttttgctgaaaaacaacatttgGAGTCAAGAACAGAgat
i caeRem4.Crem_Contig24 I 36 C 0
s caeSp111.Scaffold514   105840 327 +   141934 CTCACCAATAATAGAGTTGACACTAGATTCTGCCTCCACACATttgtttaaaatttcaacagTATCTAGGACCCGGTTGGTATGCAATTGCTTGTAATTATCGAGAAGTTGTGGaagttttttgtcaaaataCGCATCTTGCTCAATGTTAGCTTTGCTGGTATGTGCTGCGTAAGTTTGTTTTGACTCTTCAAGAGATCCACTTTTCACCATAtagttgtttttcgttttttcaagcTCCAGTCGAGATatttccatgtttttctcAGCTTTAGCATATTTTAGCATTGCAGCCTCCGTCTCTTTGAAtgactttctgaaaaaa-----------------------tc
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      477618 333 +   783054 CATACCAATGACAGAGTTCACACTTGATTCTGCCTCCACACACTTGTTCAAAATCTCGACAGTATCCAAAATCCGGTTGGTATGCTGAGTTTTGTAATTGGCAAGAAGGTTTGGtagctttttctcaaaatatgcACTTTGCTCTTCGTTAGCTTTCATTGTCATAGCTGCATAGGTCTGCTTGGATTCTTCAAGAGTTCCAGATTTCATTTGATAGTTgttctttgtcttttccaattccaaaCGCGAGATCTCCATATTTTTCTCGGCCTTTGCGTATTTCAACATAGCAGCTTCCGTTTCCTTGaacgattttctgaaaaaaaaaaa-----------------ggt
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   42248 335 +   115485 CATACCAATAATAGTATTGACACTGGATTCAGCCTCCACACActtgttcaaaatttccacAGTATCCAAGATACGGTTTGTGTGCaactttttatagttttcGAGAAGAGTTGGCAATTTCCTCTCAAAGTGCTCTGCCTGTTCATCATTGGCCTTGCTTGTCATAGCCGCGTACGACTGCTTCGACTCTTCCAGCAGACCGCTCTTCACCTGGTagttgtttttggttttttccaGCTCTAGACGGCTAATCtccatatttttttcagctttCGCATACTTTAGCATGGCTGCTTCAGTTTCTTTGAATGattttctgtgaaaaaaaacag---------------gat
i caeJap4.Scaffold16506 C 0 I 19

a score=2710.000000
s ce10.chrX             1514032 8 + 17718866 TTTTTTTC
s cb4.chrX               720305 8 + 21540570 TCTTCCTC
i cb4.chrX              C 0 I 859
s caeRem4.Crem_Contig24  977510 8 -  1162296 tttttatc
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   106167 8 +   141934 ttgatttt
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      477951 8 +   783054 tttttttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   42583 19 +   115485 I

a score=-598.000000
s ce10.chrX             1514040  7 + 17718866 GGTGATT----
s caeRem4.Crem_Contig24  977518 10 -  1162296 -gttttcgGTT
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   106175  7 +   141934 AGTACTC----
i caeSp111.Scaffold514  C 0 I 340
s caePb3.Scfld02_62      477959  7 +   783054 ggttttt----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   42583 19 +   115485 I
e cb4.chrX               720313 859 + 21540570 I

a score=273.000000
s ce10.chrX             1514047 1 + 17718866 A
s caeRem4.Crem_Contig24  977528 1 -  1162296 A
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      477966 1 +   783054 a
i caePb3.Scfld02_62     C 0 I 42
e caeJap4.Scaffold16506   42583 19 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=346.000000
s ce10.chrX             1514048 10 + 17718866 CTTCGTGGAC
s caeRem4.Crem_Contig24  977529 10 -  1162296 TTTTATGCAC
i caeRem4.Crem_Contig24 C 0 I 39
e caePb3.Scfld02_62      477967 42 +   783054 I
e caeJap4.Scaffold16506   42583 19 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=0.000000
s ce10.chrX             1514058 549 + 17718866  
e caePb3.Scfld02_62      477967  42 +   783054 I
e caeJap4.Scaffold16506   42583  19 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I
e caeRem4.Crem_Contig24  977539  39 -  1162296 I

a score=302.000000
s ce10.chrX             1514607 2 + 17718866 AA
s caeRem4.Crem_Contig24  977578 2 -  1162296 AG
i caeRem4.Crem_Contig24 I 39 C 0
s caePb3.Scfld02_62      478009 2 +   783054 aa
i caePb3.Scfld02_62     I 42 C 0
e caeJap4.Scaffold16506   42583 19 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=39271.000000
s ce10.chrX             1514609 164 + 17718866 AACACCTACACATATTCCTTATGCGATTTCGCCATTTCATCGATAACCATCCGTAACTGCTTTCCCAAATTACTGTTATCCGACTCTAGCTGCTTCTTCGCCACCCGGTACTCGGCAATCTTTTGCGTTGTGAACGGGATGACTGCGCTTTTCAGATTTTCGGC
s caeRem4.Crem_Contig24  977580 164 -  1162296 AGAACTCACCCATATTCCTTATTAGCCTTCACCATTTCATTGACCGCCGCATTCAACTGCTTGTGAATGTTGTTATTGTCAGTTTCCATTTGTTTTCTAGCCAGCCGATACTCCGTTGCTTTCTGATTGGCAAATGGGATGACATTGGTTTTGAGGTTTTCGGC
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      478011 164 +   783054 aaaactaacccatATTCCTTATGAGCTTTGTTCATGTCATTGATAACCATCTGTTGTTGTTTTGTCAAATTTGCATTGTCCACTTCTAGTTGCTTCTTGGAGTTTCGATACTCCGCAATTTTGGTGGTGGCAAATGGGATGACgttgtttttcaggttctcgGC
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   42602 164 +   115485 AGCACTAACCCATATTCCTTATGCGCTTTCATCATTTCAGTAGTGACAATAGACAACTGCTTCATGATATTAGCATTGTCAACTTCCAGTTGTTTCTTGGTAATTCTGTATTCGGCAATTTTTGTCGTTGCAAAAGGAATTACATTGGTTTTGAGGTTTTCAGC
i caeJap4.Scaffold16506 I 19 I 1356
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=11106.000000
s ce10.chrX             1514773 137 + 17718866 AAT---------CAGC-------------------------------------------------------------------------------------------TCGTGTTGTGTGGCAACTGGGACGATTCCGGCAATGACGTCATGAAATCCTTTGACGTATGACACCGAATTCCACAGCTCGCTTTCACTCTTCATTTTCATCGCCGT-CTTCTTGGACAGGGCTCTGTAAA
s caeRem4.Crem_Contig24  977744 237 -  1162296 GATGCTCTGAAATATCCATAAGAGTTagagttttgtgttttttggagtAGTCATGTCGCTATTTTATACAAATTCGGGTTGCAGTAAGATCTAGTCTTCAACATACCTCATGTTGAACAGCAATTGGAATCAGCCCATCCACCATTTCATTGAATCCTCGATTACAGGAAAGTGAGTTGATGAGCTCGTtctcattcttcattttc-cagtaGTGCTTTTTGTGGAGggctctgaaaa
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      478175 186 +   783054 Aat---------tagctagaaaaaaatgagtttag----------------------------------aaatatg------aaaaaaatttgg--ttgaaCTAACTTCACGTTGAGCAGCAATCGGGTAAATACCGTTGATGTAGTCATGGAATCCTTTTACATATGTCACAGTGTTCCATAGCtcgctttcatttttcattttcataacaGT-CTTCTTGGCAAGagttctgaaac
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   44122 137 +   115485 ----------------------------------------------------------------------------------------------------aattacttCGTGTTGCGTAGCCACAGGAACAATTCCATTGATGACATTCTGATATCCTTTGACGTATGATACTCCATTCCACAATTCACTCTCGTTTTTCACCTTCATCAAACA-CTTTTTGGAGAGGGCTCTGTTAA
i caeJap4.Scaffold16506 I 1356 I 23
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=-3533.000000
s ce10.chrX             1514910 38 + 17718866 AAATG--TTTGGGGTTTGGTTGAAATGC------ATATTGT----TCACA--------
s caeRem4.Crem_Contig24  977981 54 -  1162296 aaagaatttcatgATTCAGTTTAAACACAGGACAATATTGTG---TAACTCACTTTA-
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      478361 33 +   783054 agaaaaatt-------------------------atattttgttaTGATTTTCTTAAA
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   44259 23 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=594.000000
s ce10.chrX             1514948 21 + 17718866 ATTTACT---AGATTTTTACTGAA
s caeRem4.Crem_Contig24  978035 24 -  1162296 ACTTGCTCGCAAATTCCTGCTGGA
i caeRem4.Crem_Contig24 C 0 I 30
e caePb3.Scfld02_62      478394  0 +   783054 C
e caeJap4.Scaffold16506   44259 23 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I

a score=0.000000
s ce10.chrX             1514969 746 + 17718866  
e caePb3.Scfld02_62      478394   0 +   783054 C
e caeJap4.Scaffold16506   44259  23 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I
e caeRem4.Crem_Contig24  978059  30 -  1162296 I

a score=259.000000
s ce10.chrX             1515715 5 + 17718866 ATTGC
s caeJap4.Scaffold16506   44282 5 +   115485 ATTTC
i caeJap4.Scaffold16506 I 23 C 0
e caePb3.Scfld02_62      478394 0 +   783054 C
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106182 340 +   141934 I
e caeRem4.Crem_Contig24  978059 30 -  1162296 I

a score=505.000000
s ce10.chrX             1515720 6 + 17718866 AAAATC
s caeSp111.Scaffold514   106522 6 +   141934 AGAACA
i caeSp111.Scaffold514  I 340 C 0
s caeJap4.Scaffold16506   44287 6 +   115485 AAAGCA
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      478394 0 +   783054 C
e cb4.chrX               720313 859 + 21540570 I
e caeRem4.Crem_Contig24  978059 30 -  1162296 I

a score=15556.000000
s ce10.chrX             1515726 64 + 17718866 ACTCACTTCAACTTAGAACTGTACTCCAACTCGATGCTGGCTCGTTCTTTTGAGTAAGCCATTA
s caeSp111.Scaffold514   106528 64 +   141934 ACTTACTTCATATTTTTACCGTACTCCAGTTCAATCGCTGCACGTTCTTTCGCATAGGACACCA
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      478394 64 +   783054 ACTCACTTCAGTTTTGCACTGTATTCAAGTTCTATAGCGGCTCGCTCCTTGGCATACGTGACAA
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   44293 64 +   115485 ACTCACTTCAGCTTGGTACTGTACTCTAGTTCAATACTTGCCCTTTCTTTCGCGTACATCTGAA
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               720313 859 + 21540570 I
e caeRem4.Crem_Contig24  978059 30 -  1162296 I

a score=30430.000000
s ce10.chrX             1515790 65 + 17718866 TCCGCTCCAGCAGGTCGATACCTTTTCCAGTGTATTCATTGAGAGTACCTTGTTGGTCCTGAAAA
s caeRem4.Crem_Contig24  978089 65 -  1162296 TCCGATCCATAGTCTCGATTCCTTTTCCAGCTTCATCGTTGAGGTTGGACATTTGGTCCTGGAAG
i caeRem4.Crem_Contig24 I 30 C 0
s caeSp111.Scaffold514   106592 65 +   141934 AACGTTCAATCACTTCGATACCTTTTCCAGTATACTCATTGAGAGCATGTTGTTGGtcctaaaaa
i caeSp111.Scaffold514  C 0 C 0
s caePb3.Scfld02_62      478458 65 +   783054 TCCGTTCCATAACATCGATACCCTTTCCAGTGTACTCATTGAGCGTGTGCTGTTGGTCCTGTGAA
i caePb3.Scfld02_62     C 0 I 589
s caeJap4.Scaffold16506   44357 65 +   115485 CACGCTCGAGCAAGTCGATGCCTTTTCCCGTATACTCATTGAGAGCGACTTGTTGGTCctgaaat
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               720313 859 + 21540570 I

a score=546.000000
s ce10.chrX             1515855 1 + 17718866 T
s caeRem4.Crem_Contig24  978154 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   106657 1 +   141934 t
i caeSp111.Scaffold514  C 0 I 1439
s caeJap4.Scaffold16506   44422 1 +   115485 t
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      478523 589 +   783054 I
e cb4.chrX               720313 859 + 21540570 I

a score=273.000000
s ce10.chrX             1515856 1 + 17718866 T
s caeRem4.Crem_Contig24  978155 1 -  1162296 T
i caeRem4.Crem_Contig24 C 0 I 25
s caeJap4.Scaffold16506   44423 1 +   115485 t
i caeJap4.Scaffold16506 C 0 I 781
e caePb3.Scfld02_62      478523 589 +   783054 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=0.000000
s ce10.chrX             1515857 36 + 17718866 AGTCCAGATTAGTGATTTTTCATTTACTGGGAGCAG
e caePb3.Scfld02_62      478523 589 +   783054 I
e caeJap4.Scaffold16506   44424 781 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  978156 25 -  1162296 I

a score=1238.000000
s ce10.chrX             1515893 304 + 17718866 GTCCTAAAATGCCCCAAAAGGTATAGTTTTTTTTCTTTTCCCTCAATCAAAATTCCTCAGTT-------TTTGGGAATAAATCTCCTGTAAATCATACTTTTCACGTTGCCAGAGCACTCTGAAATTCCCCCGAAATATCGATTTTTAACTTTTTCGTACCTTTTACTCGTCCGACATCAAAGTCCTTACTACAAGTGCATCCCGCGCCA--ATTACCTTCAAT-TCGATACTTCAC----TCGCCCTTA-TTCAAC----GCAAAACACTTGACTTCT-------CACCCCCGA--------------------------------------------------TTCTATT-CAAATACCACGCGTGGGTGAGCACACGC
s caeRem4.Crem_Contig24  978181 309 -  1162296 GTCATGAAATGTTCTAA-----------TTTTTGCATTCCCCTAGCCTAGAATGTCCCTATTCCGCATGCCTAGGAGCAGGT----------TCTTCCATTTCTC----------------GATATTTCCc--aactattcattttttg-----------------------------taacatCCATA----AAGTGCATCGCGTCCAATTATTACCTACAATCTCTATCCTTCACCTTTTCCCTCCTACTTCAACCTCTCCAAAACACTTGACTCttttcacaacattttcgaGGACGCATAGACTATATGGGCCACCAACCAGACAAATACTCATATGGGATCCCTATTACAAATAATACGCGTGGGTGAGCATACGC
i caeRem4.Crem_Contig24 I 25 I 94
e caePb3.Scfld02_62      478523 589 +   783054 I
e caeJap4.Scaffold16506   44424 781 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=0.000000
s ce10.chrX             1516197 88 + 17718866 TTCGCTGTTCACTATATATGTATATAGTTTTTTATAGCAAAAATACATACTTTTTATATAAAATTCCGTACGAACACAACAATAGTGC
e caePb3.Scfld02_62      478523 589 +   783054 I
e caeJap4.Scaffold16506   44424 781 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  978490 94 -  1162296 I

a score=1905.000000
s ce10.chrX             1516285 149 + 17718866 TGTTCGAACGAAAATACAAACAGGAAAATGGGGGCA---GTGTTTGCTTTTGGCATTTGAATTTCGCAAGAAGAACG---CGGAGCAAGCAATTGATTGTGCGCCGAGA--AACAAAACAGGCAAACGATGGACTGTTGCAAAC-TTTAAAGGTTGGG
s caeRem4.Crem_Contig24  978584 156 -  1162296 TgtttggaataaaaaacaaacacAAGCCCCGGAGTGTTTATGTTTGCATTTTGGATTAG-ATTTCGAAAGGAAAAAGAACAGGAGAACTGAATAAGAAGTGTgtagaaaacaacaaaa-aagcaaGTCACAAATTGGAGAAAACATATGGCGATTGGG
i caeRem4.Crem_Contig24 I 94 I 193
e caePb3.Scfld02_62      478523 589 +   783054 I
e caeJap4.Scaffold16506   44424 781 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=0.000000
s ce10.chrX             1516434 547 + 17718866  
e caePb3.Scfld02_62      478523 589 +   783054 I
e caeJap4.Scaffold16506   44424 781 +   115485 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  978740 193 -  1162296 I

a score=902.000000
s ce10.chrX             1516981 4 + 17718866 ACCT
s caeRem4.Crem_Contig24  978933 4 -  1162296 ACCT
i caeRem4.Crem_Contig24 I 193 C 0
s caeJap4.Scaffold16506   45205 4 +   115485 ACCC
i caeJap4.Scaffold16506 I 781 C 0
e caePb3.Scfld02_62      478523 589 +   783054 I
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=7546.000000
s ce10.chrX             1516985 47 + 17718866 TTGTCCCATAAATTCGACT---AGCCGTATCTTC---CTGATACCCGTGGTTG
s caeRem4.Crem_Contig24  978937 50 -  1162296 TTGACCAATAAATCTTGTCTGATGCTGAGTCTCC---CTGATAACCATGACCA
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62      479112 47 +   783054 TTGTCCCATAAATCTTGCT---AGCAGTATCATC---TTGATACCCATTGCTA
i caePb3.Scfld02_62     I 589 C 0
s caeJap4.Scaffold16506   45209 50 +   115485 TACTGCCATAAATGCGATT---GACGGTATCCTCTTGTTGGTACCCATGAATA
i caeJap4.Scaffold16506 C 0 C 0
e cb4.chrX               720313 859 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=55364.000000
s ce10.chrX             1517032 134 + 17718866 TGGTTGTGGTGGTTGTTGTGATGATGATG-ATCGTTATTGTTATTCGTGGCAAACGCCGAGTGAAACAAGTCGACCATCGATGCACGCGACAGACGGACTGTGTCACGTCCGGAACGGAACATGT------CTGTCAGACG--
s cb4.chrX               721172 137 + 21540570 ----tGGTGGCCATGTTCGTTGGACGGCGgatcattattattattatttgaaaacgCTGAATGAAATAAATCAACCATTGACACTCGTGATAGTCGAACTGTGTCTCGTCCCGAACGGAGCATGTTGTAAGCTGCCATACG--
i cb4.chrX              I 859 I 3058
s caeRem4.Crem_Contig24  978988 124 -  1162296 ----TGTAGTTTAAgtt-------------atcattattattattggaGGCAAACGCCGAGTGAAACAAGTCCACCATTGATGCCCGCGATAGTCGGACCGTATCACGTCCTGACCGGAACATGTCGTAGGCTGTCATACG--
i caeRem4.Crem_Contig24 I 1 I 5
s caePb3.Scfld02_62      479159 128 +   783054 TTGTTGTAGTGTTGGtc-------------attattattgttatttggGGCAAACGCTGAGTGAAACAAGTCCACCATTGAAGCCCGTGATAATCGGACTGTATCACGTCCGGACCGGAACATGTCGTACGCTGTCATACg--
i caePb3.Scfld02_62     C 0 I 2
s caeJap4.Scaffold16506   45259 116 +   115485 ---------TTGTTGTC-------------GTGATCATTATTATTAATCGTAAACGCCGAATAGAACAAGTCTACCATCGATGCACGCGAAAGTCGCACTGTATCACGTCCGGACCGGAACATTCCGTATGCC-----ACGTT
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=-6336.000000
s ce10.chrX             1517166 114 + 17718866 --ATGATGGTTGATGAGGTTATCAAAGAAAGCGGACGGGTAGA--ATGAGATGGAAGGACGGTATACATATTAGGTATAAAAAAATGTATAGATTCTAGTAGAACTAGTAGA-----TCAAAA
s caeRem4.Crem_Contig24  979117  63 -  1162296 --atgaaga-tgatgaggTTGTCATAGT--TAGGAAGAATCGAACATAAGAAGGA-----------------------------------------------AAGTAGTGGA--------ATA
i caeRem4.Crem_Contig24 I 5 C 0
s caePb3.Scfld02_62      479289  67 +   783054 --gtgatga-tgatgaggttGTCATAAT-ATCCAATAGATAGACAATAATGAGGAGTGAC------------------------------------------AAGGATTGGA----------A
i caePb3.Scfld02_62     I 2 C 0
s caeJap4.Scaffold16506   45375 121 +   115485 GCGTTGAGA-TGATGCAGTAACTTGAATACTCGAACCGAcggt-gaaaaaatgaagggaaGAAAGAAGTATAATAGTAAAGAAATTGGAACGAATTGAATGGAATTGTCAAGCGTGATCAAAA
i caeJap4.Scaffold16506 C 0 I 5513
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=5399.000000
s ce10.chrX             1517280 534 + 17718866  
s caeRem4.Crem_Contig24  979180 417 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      479356 350 +   783054  
i caePb3.Scfld02_62     C 0 I 1195
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=335.000000
s ce10.chrX             1517814 11 + 17718866 GGCGCATACGT
s caeRem4.Crem_Contig24  979597 11 -  1162296 TGTGTATGTGT
i caeRem4.Crem_Contig24 C 0 I 2667
e caePb3.Scfld02_62      479706 1195 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=0.000000
s ce10.chrX             1517825 681 + 17718866  
e caePb3.Scfld02_62      479706 1195 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  979608 2667 -  1162296 I

a score=4275.000000
s ce10.chrX             1518506 199 + 17718866 CGGCGTCCTAGAAACTATCGCCAGGACGGAAGGGCGCAATCCGAATGCAATGTGATCTACATATA----CAATGAATT------------GTCGACCCCAACACCGATTGACGACGCGACTagaagaagaa------gaagaagttagaagggggaggaggaagggaaaatgaggggagatgaaga-aaaaTGGTTGTAGAATTGAAATGGATTGACAGTAA
s caePb3.Scfld02_62      480901 212 +   783054 CAACGCCCTAGAAACGAATG---GGAGAGATAGTTCGAATGTGAATGCAATGTGATCTACATACATTCGCAATGAATTGGTCGAGAGGAGGTGGAAAACGATGACAATTGACGACGatggatgaagaaaaatggtaggaaaaaataagaaagtgg----GTAGATGAATATAGTAGGCGGTGGATAGAGAAGGGTTGTAG---TGAATTTGATTGAGAATAA
i caePb3.Scfld02_62     I 1195 I 1739
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  979608 2667 -  1162296 I

a score=0.000000
s ce10.chrX             1518705 2614 + 17718866  
e caePb3.Scfld02_62      481113 1739 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  979608 2667 -  1162296 I

a score=182.000000
s ce10.chrX             1521319 2 + 17718866 AA
s caeRem4.Crem_Contig24  982275 2 -  1162296 AA
i caeRem4.Crem_Contig24 I 2667 C 0
e caePb3.Scfld02_62      481113 1739 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=4897.000000
s ce10.chrX             1521321 72 + 17718866 TTTTAGTTTTT--ACCAAGGATTCAATA-------------------------AAAACTTACCCATAGCTGGTCCCAACTGCAACTGTCGTTCATTGTT
s caeRem4.Crem_Contig24  982277 95 -  1162296 TTTTCGTTACT--ATCAGCAGTTCGATAATATGGTTTTTATAAATTCTATCCTGATACTCACCCATAACGGCTGCCAACTGACTCCGTCGTTCATTT--
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      482852 72 +   783054 ttttaatttttacatGAGCAAATCAA---------------------------AATACTTACCCATAACTCTTCCCAAGAGATGCCGTCGTTCATTTTT
i caePb3.Scfld02_62     I 1739 I 446
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=1466.000000
s ce10.chrX             1521393 358 + 17718866 CGCCGCTTCTTCAAAAGGTTGTT--ACCATCCAATCCAATCTCGATTCCTTCTTTTTATGAACACTAATTGGAACTTTT----------TCGAGTTGAAGTCTGAAAAAAAA---------CTCAAAACGTTAACAGCAATGAGCAGCACAAAAAAG------------ATCCGAACAAACGAGAAGGAGAA-----------AAAAATTGAA-AACTTTAGTTCGTAAATAGGAACAAAAACAGTAATCTAAGCTGTTGACGGTTGGGCGTGTCGTGGAGCAAAAATGG---------------AGAGCAATTTGTGGTT-------GGTGCTCATGGCACCGGGAGGCGGAAGGAAGCATAGGTATAATTGTGG---GGGCTCAGGAGGGGGGGGTAAATTTTTTGT------GGAAGAGCAGAGTATTTGG
s caeRem4.Crem_Contig24  982372 409 -  1162296 TGTTGCTCTTTCACCTATCAGTTTGACCATTCACTCCTTTGGCGACGTGATCCTTCGTTGAGCGTT--TTGGCGGTTCCACAGCAATCGTCGTAGGGGAACctaaaaagacaaaaataggTCTTGCAAC-TTGAGATGAAAGAACGGCACACGAATGAAGGAAGGAACAACGTCAAAAACCAAGAAACAGTAATcagtaatccaaaaattcaacaaatgtCGCTCGT---TGTGCACAAAAGCGG---TTTCGgttgttttagtttttagttgtTGGTGTaaaaaaaCGAAGTGCGGTCGGAAATAGAGCAATTTGTGGTCGGAGCAAGGTGCTCATGGCAC------------GGAAGAGAACGTATAATTGTGGACTGGACTCC----ATGGAGGTTTATTTTATGTAAATAGGAGAAAGGAAGGTCCTTGG
i caeRem4.Crem_Contig24 C 0 I 1290
e caePb3.Scfld02_62      482924 446 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=0.000000
s ce10.chrX             1521751 367 + 17718866 AGTGCTATGGGAGGTTGAAAAAAGGTGGAGAAAATTATTGCAAAATTGAGAAATTAATAGAAAAAATCAAGCTTAATCAAAAAAAAAACATTTCGCTAAAACGTGCTAGATTATTCGAAAAATCGGAAAAAGTTTAATAGCCGAAAATGGCCTAAAACCTCCAATTTTCAAACTTTTCCATATGGTATAGTTCACGGTTACCAGGTACCAGAAATTTTCAGCTACCGAATTTACAAAAATAGCATCAGCAAATAGTGAAAAAATTAAGAAAATCAGCAAACAATTTTTCACTTATTTCCGTTGAAACAGGCTAGACCCCAAAGAAACATTCCAATCCCAAATTTATCCGAGAACAGCAACACAGAAA
e caePb3.Scfld02_62      482924 446 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  982781 1290 -  1162296 I

a score=4903.000000
s ce10.chrX             1522118 244 + 17718866 AAAACAAGATAGGCGGTCACGAGAAGTGGGGTCCGCGGTCAGCTC---------GAGC----ACCCAGCTCGAGCTGCAGCAGCTCGGACCTCGAAAAG------------------TAGCTCCCAAGAGAAGAAGAAAAAGAAGAGACGCTATTTCTCGCCCAATAGCATATGTATACACA----------------TGTGTGCGTCTGCGTATCTTGCTATCT---------AGGATAGACCT------------------CGGGGTCCCGGGGTTTTCGGAGATATTGATGAGCGAAAAATGAAGAG---TTTACAAC
s caePb3.Scfld02_62      483370 298 +   783054 AAAACAAGATAGGCGGTCATGAGAAAAGGGA--CGTGGTCAGCCCCCCGATGAAAAGCCTGGAgccagggggggggggggcaga-AGGACCTCGAAAAGTCGAAGGGAGAGAAAAGATAGCTCCCAAGAGAAGAGGAGCAG----------CACTTCTCGCCGGATGGAATATGTATACAcatccttctctctttttctatgtGGTTCTCTCTGTCTTTTTTGCTGTGAGAGAGGGAATAGACCTATTGCCAGGCAGCTGGTCCGAGATCCC-GGCTTTCcggagaag---------aaaaactgaagaaatttttacAAC
i caePb3.Scfld02_62     I 446 I 397
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  982781 1290 -  1162296 I

a score=0.000000
s ce10.chrX             1522362 549 + 17718866  
e caePb3.Scfld02_62      483668 397 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  982781 1290 -  1162296 I

a score=328.000000
s ce10.chrX             1522911 52 + 17718866 AACCTAAAGCTGACT--AAAATATATATATATATACTGGTTTCAAAGGACT---------------TCC
s caePb3.Scfld02_62      484065 69 +   783054 aaCCAATAACTGACTGTATATTATAAAAATAATGACTACCTTGAAGGCACTCAAAACATgggaagattc
i caePb3.Scfld02_62     I 397 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I
e caeRem4.Crem_Contig24  982781 1290 -  1162296 I

a score=2366.000000
s ce10.chrX             1522963 72 + 17718866 AAAAAAGCCCTACAATCACTCTCAGA-----------AAAAACTACCCAAAAAATGCTATGCTTGTCGTACCCGACGTTTCTC
s caeRem4.Crem_Contig24  984071 74 -  1162296 AAAAAAGTCCAACA-----TGTTGAGCCCTCCTTGTTAAGCCTCCCCAAAAAAG----TCGATTGTTAAACCTGACTTGTCTC
i caeRem4.Crem_Contig24 I 1290 C 0
s caePb3.Scfld02_62      484134 61 +   783054 aaaaaa---caata----ttgcCAAA-----------aaggaataacaaaaaaa----atgctagTTGAACCTGACTTGCCTC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   106658 1439 +   141934 I

a score=26687.000000
s ce10.chrX             1523035 104 + 17718866 AAGGTAATATGCAAAACAG------------GCCTCCTTTTGTCCC------CCCTCCTGCCTCGCCAATCTTTC---------CATGGCCAA--------------ACGCA-AAAGTTCAAGTGACCCGCC--AAATCGACGACAAC
s caeRem4.Crem_Contig24  984145 136 -  1162296 AAGGTAATATGCAAAACAGCCCAcccttcctgtcttttttcttatttccatcttttctttcccccctcttcttc----------cACGGCCACACACTCACAAATACACGCGAAAAGTTCAAGTGACCCGCC--GAATTGACGACGAC
i caeRem4.Crem_Contig24 C 0 C 0
s caeSp111.Scaffold514   108097 127 +   141934 AAGGTAATATGCAAAACAGCCTA-CTCTCcaatcttttctctttct------ttttcttttccccattttcttcctattcctttcACGGCCAC-----------CACACGCA-AAAGTTCAAGTGACCCGCC--AAATTGACGACTAC
i caeSp111.Scaffold514  I 1439 I 936
s caePb3.Scfld02_62      484195 121 +   783054 AAGGTAATATGCAAAACAGC------CTTcaacctcttcttttctt------ctttcttcctttctttacCTCCC---------CACGGCCACAC-----CAATCACACGCG-AAAGTTCAAGTGACCCGCCGAAAATCGACGACGAC
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I

a score=-24786.000000
s ce10.chrX             1523139 596 + 17718866  
s caeRem4.Crem_Contig24  984281 490 -  1162296  
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      484316 571 +   783054  
i caePb3.Scfld02_62     C 0 I 76
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=-1597.000000
s ce10.chrX             1523735 101 + 17718866 AGTAATTCCAGAAAAGCGTCTGGAACTCGATA--GCATTTACCAACACCCAACTAGCTTCTCATTGGTTTTGCCACAACCGCAAGACTACTTCATCCGAAGCA
s caeRem4.Crem_Contig24  984771  71 -  1162296 AGTAGTCAC-------CATCTCTA-CTCACTAATGAATTCCAGAATACACAA----------------------ATGAACGTAGTAC--CCTCTATCTACCCC
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      484887  76 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=4229.000000
s ce10.chrX             1523836 443 + 17718866  
s caeRem4.Crem_Contig24  984842 426 -  1162296  
i caeRem4.Crem_Contig24 C 0 I 277
s caePb3.Scfld02_62      484963 379 +   783054  
i caePb3.Scfld02_62     I 76 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=-3110.000000
s ce10.chrX             1524279 264 + 17718866 ACAAAAAATTTGTTTCGCACTGACCAAAAAATTTGTTTCGCACTGACAA---AAAATTTGTTTCGCACTGACCAAAAAATTTGTTTCGCACTGACCAAAAAATTTGAAAAAAAAGAAACGATAACGGTTGACTTTCACAGATATACTTCTGAATATAAATTTTTTTAAAGTCATTTGAGAAATACAAAAAAGCAAAATTTTCACAAACAGGCAACCCCTGGTTTCCAGGACCCCAAATATGCCAATTTCAATTCGCAAATACTTCAC
s caePb3.Scfld02_62      485342 141 +   783054 ATAAGAAAT-------ACACTGATTTACAAATG-----------GACAACGTAAAA-----------------AAGCAATTGGTGGCAC----------------GAATAAACTGAATTTGTCGTGTctgatttt--------------------tggctttttttcg------------------------------cttttcaaaCAG-------------TCCAAGCCACGAAA-------ATTGCACTAAATGAACCC-----
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   108224 936 +   141934 I
e caeRem4.Crem_Contig24  985268 277 -  1162296 I

a score=-763.000000
s ce10.chrX             1524543 19 + 17718866 A--ACATCTCTCGAGGTTTTC-
s caeRem4.Crem_Contig24  985545 19 -  1162296 AGTACGTATTC---AGATTTCC
i caeRem4.Crem_Contig24 I 277 C 0
s caePb3.Scfld02_62      485483 18 +   783054 ---atgtttctcgaaaatttg-
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e cb4.chrX               721309 3058 + 21540570 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=-2582.000000
s ce10.chrX             1524562 55 + 17718866 CGAAATTGACAA-GCCCCCCCCCCCCCCCCCTTCTATTCTTGGTTCCATGCTTCCT--------
s cb4.chrX               724367 39 + 21540570 caaaattgacaa-atcCAAACCCTCAACTG----------------CTTATTTCCT--------
i cb4.chrX              I 3058 C 0
s caeRem4.Crem_Contig24  985564 26 -  1162296 TAAAATTGACAG-GAACA-----------------------------TCACTTCCT--------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      485501 54 +   783054 caaatttaaCAATAGGCACCTCCCTGACCA--------GCTGGT--CCTATTTCCCTACCACAT
i caePb3.Scfld02_62     C 0 I 18
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=300.000000
s ce10.chrX             1524617 1 + 17718866 G
s cb4.chrX               724406 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  985590 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      485555 18 +   783054 I
e caeJap4.Scaffold16506   45496 5513 +   115485 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=9889.000000
s ce10.chrX             1524618 28 + 17718866 GCCGGCTGGTCTAGAGGGCCTCTTCACC
s cb4.chrX               724407 28 + 21540570 ACCAGCTGGTCTGGAGGGCCTCTCACAC
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig24  985591 28 -  1162296 GCCGGCTGGTCTGGAGGGCCTTTCTCGC
i caeRem4.Crem_Contig24 C 0 I 21
s caeJap4.Scaffold16506   51009 28 +   115485 GCCGGCTGGTCTAGAGAGCCTCACAAGA
i caeJap4.Scaffold16506 I 5513 C 0
e caePb3.Scfld02_62      485555 18 +   783054 I
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=-1364.000000
s ce10.chrX             1524646 24 + 17718866 GACATAAGGATTGAGCGACACGTC
s cb4.chrX               724455 24 + 21540570 GGCATTCAAGTAAAGCGTCGGGTC
i cb4.chrX              I 20 I 3
s caeRem4.Crem_Contig24  985640 22 -  1162296 GGCATTCAGGCATAGTG--GGGGC
i caeRem4.Crem_Contig24 I 21 I 1
s caePb3.Scfld02_62      485573 19 +   783054 GGCATAGGGTTAGA-----AGACC
i caePb3.Scfld02_62     I 18 C 0
s caeJap4.Scaffold16506   51037 14 +   115485 GGCATTTGGAAGGG----------
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514   108224 936 +   141934 I

a score=6037.000000
s ce10.chrX             1524670 203 + 17718866 TGATGACTAATTCGACACAACACGGGCTTCGagaaagagaagaa------gaagaaga-------------------agaagaagaaCACATTAAAT-AGAGAGCGGAGGTGACGAGACGCAGACTGACAAAGAGACACCCTGGGAAGAGGAAAGGA---GGAAATTGCTGCTGCTGCAGCCGCTTGTG-GTGAT--GGTCAATGCTTTGGGCGCCAGATGTTCAAATAATGGAT
s cb4.chrX               724482 182 + 21540570 TGGTGACTAATTTG-----ACATGGGatt-gaaaaggagaagaaaatgaaaatgaagactGGAGAGTGCGGCTGAGCGGATGGAGGGTGAAGTAGGAGAGATTGAAAATGGg------------------gaaagaaatttgaagaac-agAAACGG---CAGGATTG--------GTTGGCAC---------AC--CATCAAAAT------CGCCAGATGTTCAAATTATGAAT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig24  985663 173 -  1162296 TGATGACTAATTCG-----ACACGGGCTT-GAGAAAG-------------AATGAGGAGTAA---------------GGACTAAGGGTCTACTAGACACATTAGAAACCGGG------------------AAAATCTATCGAAAGGATGAGAGACGGAGATAGAATTG--------GCAAAAGCGAGAGAGGGAT--GGTCAAAGCTTCGGGCGCCAGATGTTCAAATAATGAAT
i caeRem4.Crem_Contig24 I 1 C 0
s caeSp111.Scaffold514   109160 167 +   141934 TGATGACTAATTCG-----ACAGGGGTTt-gaggag--------------aaagaggagTCT---------------CAGGCACCTACACATTGAATCGAAAAGTGAAGGcg------------------gagagagacgcagatagTGAGAAAGAG---TGCAATAG-----------TGGGAGAAAA-AGGATGCGGTCAATGTTTCGAGCGCCAGATGTTCAAATAATTAAT
i caeSp111.Scaffold514  I 936 I 3317
s caePb3.Scfld02_62      485592 157 +   783054 CTATGACTAATTCG-----ACACGGGCTT------------------------GAGGAGTCT---------------CCGGCACCGACACATTAAAGCAGGAAGAGTTGGTG------------TGAATTAAAAGAGACG--GAGGATGAACAGAAG---TGGAATTG-----------AGGATGAGAATAAGAT--GGTCAATGCTTCGGGCGCCAGATGTTCAATGAAT----
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   51051 102 +   115485 CGATGACTAATTCG-----GAACGA-------------------------AGCGAGGTCTAC---------------------GGGACACATTA---------GAGGAGGGG-------------------------------------AGAAAGAG----------G----------------------GAAAT--GGTCAATGCTTTG--CGCCAGATGTTCAAATAATAAAT
i caeJap4.Scaffold16506 C 0 C 0

a score=2141.000000
s ce10.chrX             1524873 10 + 17718866 TTGATG--AAGA
s cb4.chrX               724664 10 + 21540570 TCAATG--GAAA
i cb4.chrX              C 0 I 3293
s caeRem4.Crem_Contig24  985836 12 -  1162296 TCGAGGATGAAA
i caeRem4.Crem_Contig24 C 0 I 1
s caePb3.Scfld02_62      485749 10 +   783054 CGGGCG--GAGA
i caePb3.Scfld02_62     C 0 I 1623
s caeJap4.Scaffold16506   51153 10 +   115485 TCGATG--AAGA
i caeJap4.Scaffold16506 C 0 C 0
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-1712.000000
s ce10.chrX             1524883 59 + 17718866 GACTCGCACTGGGAAATTTGCAAGGAATGGA--GAA----------CGAGGATTAGAGAAACTGA--------GGCTTT--
s caeRem4.Crem_Contig24  985849 68 -  1162296 GAGGGGAAGGGGGGCATACG---GGaatggaatgaaatgaaatttgcgtgaatggaagaaaataa--------ggtttt--
i caeRem4.Crem_Contig24 I 1 I 1513
s caeJap4.Scaffold16506   51163 64 +   115485 ----GGAAGAGG---ATTTGCAGAAGAAAGAGTGAA----------CAAGAGCAAGAGATAGAGGCACACATTGGTTGTGT
i caeJap4.Scaffold16506 C 0 C 0
e caePb3.Scfld02_62      485759 1623 +   783054 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=867.000000
s ce10.chrX             1524942 27 + 17718866 TTTAGTTACGGAATAGACAGTTAGAAA
s caeJap4.Scaffold16506   51227 27 +   115485 GCTTGCTCCGGAggagaaaattggaaa
i caeJap4.Scaffold16506 C 0 I 407
e caePb3.Scfld02_62      485759 1623 +   783054 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  985917 1513 -  1162296 I

a score=0.000000
s ce10.chrX             1524969 1252 + 17718866  
e caePb3.Scfld02_62      485759 1623 +   783054 I
e caeJap4.Scaffold16506   51254  407 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  985917 1513 -  1162296 I

a score=2651.000000
s ce10.chrX             1526221 64 + 17718866 ATAGAAAAAAACGGAGAAAAAAATTTTCGCGATCAGATAAACATTATGAGTCA-CAGGGGGAAAA
s caeRem4.Crem_Contig24  987430 64 -  1162296 ataaagaaaaaatggggCAAACAGCTTCG-GATCAGATAAACATCATGAGTCATCACAAAGAAAA
i caeRem4.Crem_Contig24 I 1513 I 183
e caePb3.Scfld02_62      485759 1623 +   783054 I
e caeJap4.Scaffold16506   51254 407 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1526285 113 + 17718866 GAACGTCTTGAGATGTTGCCGAACATTTCCCAGAGAAAAAAATAGGACACAAGTTTTTTTTTTGGGAAAAGCTAAAAAGTTTTAGTGGGGTTATTTAGTGTCACTCCATTTTG
e caePb3.Scfld02_62      485759 1623 +   783054 I
e caeJap4.Scaffold16506   51254 407 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  987494 183 -  1162296 I

a score=469.000000
s ce10.chrX             1526398 73 + 17718866 AAAAAAAGTACCAAAAATTGCTC-----ACAAAC-----CGGAGCGGGTTGGAAAC------GGAAAAAAGAGCCCCCCGGTGGTAGAT
s caeRem4.Crem_Contig24  987677 76 -  1162296 aaaaaGAGTGTTCAAAATTGGTTGAGATAGAAACGATGGAGGATCGGGACGGAAAAACGACAGGAAAAAAGAGT-------------GA
i caeRem4.Crem_Contig24 I 183 C 0
e caePb3.Scfld02_62      485759 1623 +   783054 I
e caeJap4.Scaffold16506   51254 407 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=300.000000
s ce10.chrX             1526471 1 + 17718866 G
s caeRem4.Crem_Contig24  987753 1 -  1162296 G
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      487382 1 +   783054 g
i caePb3.Scfld02_62     I 1623 C 0
e caeJap4.Scaffold16506   51254 407 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=15152.000000
s ce10.chrX             1526472 43 + 17718866 GTAGAACGGGGGAAAAGAATTGTGGAAAGTCGTTGAACAAACA
s caeRem4.Crem_Contig24  987754 41 -  1162296 GTGGAAT--GAGAAAGGAATTGTGTAAAGTCGTTGAACAAACA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      487383 41 +   783054 gtggaat--GAGAATGGAATTGTGTAAAATCGTTGAACAAAca
i caePb3.Scfld02_62     C 0 C 0
s caeJap4.Scaffold16506   51661 43 +   115485 GTAGAGTTGGGAAATAGAATTGGACAAAGTCGTTAAACAAACA
i caeJap4.Scaffold16506 I 407 I 28405
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=6176.000000
s ce10.chrX             1526515 87 + 17718866 GTTTCAATTCATTCAGTGGTTGCCCCCCGCCGTTTGTTGCTTGTTTTTTTTTCTGGCTCCACAGCTCCGCCTCTGTGCAGTTTTGTG
s caeRem4.Crem_Contig24  987795 48 -  1162296 GTTTCAATTCATTCact-----------------------gtgtttttttctc----------------ctcctgtGCAGTTTTGCG
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      487424 62 +   783054 gtttcaattcattcact---CACTCCTca-----------gtgttgttttttctggtt-----------tgTCTGTGCAGTTTTGCG
i caePb3.Scfld02_62     C 0 I 807
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=100.000000
s ce10.chrX             1526602 1 + 17718866 C
s caeRem4.Crem_Contig24  987843 1 -  1162296 C
i caeRem4.Crem_Contig24 C 0 I 411
e caePb3.Scfld02_62      487486 807 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1526603 777 + 17718866  
e caePb3.Scfld02_62      487486 807 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  987844 411 -  1162296 I

a score=5491.000000
s ce10.chrX             1527380 357 + 17718866 TTCACACCATCAACCTCCTCCAATTTCAAAAATAAAATGAGATCAACTACATGTGACGGTCAGTTGAGTGAAAAGTAAGAGACGGAGGGGTATACTACTCCTCCAACAACCCCCCACTGTCGCCCTCCTCGATACAAACACAGAAATGTAGTTTTTATAGAATAGTCAAAGTAGTAGTAGCAGTAGGTATTGTATAGATATCTAGAGATAGATATGAAAGTGAGAGAGTGCGGAGGGGTGCGAGAGAAATTGCGCCGCGGCTGCCGGTGGTTGTGATGGCAGCAGATGATAACATG--TAAAGGTCAGCAGAGACACTAACAAGTTAAGTAGGATTTTATGGGTGTCACGGAACTGTGA
s caeRem4.Crem_Contig24  988255 287 -  1162296 TTCACACCTCAAAACTACTCTgacattcaaaataaaatgggATCAACTACATGTGACGGTCAGTTGAATGGAAAG--------------------------------------------------TCGTCGAAACAGACACATAGTAGCAGGTATTATAT-ATATTGGGAG--GTTGTGGTggtgaaaaagaaacggagAT-----GGTTGAGAAGAGAGGAGACGATTGAGTAAGtgggaaaaagagagtgtCTCGCGCCTCT------TTTTGATGGCAGATAATGATAAGAGGGAGAAAGGTCAGCAGG-----TAACCGG---AGTAGTATTTAGTGGTGGCGGTGGAATTAAGA
i caeRem4.Crem_Contig24 I 411 I 254
e caePb3.Scfld02_62      487486 807 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1527737 237 + 17718866 AAAAAGTTGGTAGACAAGTTTTTGAAATAGTAGCTTACAAATGTATGAATTGTGaaattttgttcaaatggctcagtgggatttttgatgtctactaatttggagaccggggttcgagttcgcattgcggccTAATTTTTTTGTAGCTATTTTTTGAAAGTCACATGCAGTAAATAATCTGCGTAGAGTTTGAATTTTTGGACCAAATATGTACTAAAAAATTGGACTTGAGCaaat
e caePb3.Scfld02_62      487486 807 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  988542 254 -  1162296 I

a score=66.000000
s ce10.chrX             1527974 105 + 17718866 ttaaaaaaattgttaaaggtttttattattaagagtatagttaaatttaaaaaaaaaata----------------ttGTTCCCCAATTTCCAAAACATTTGAAACATCATGAAT----CCTCCC--------------
s caePb3.Scfld02_62      488293 138 +   783054 ttacaaaaagttatgatgaTATCCATTTTTTACAGT-TGGAAAAACTCATAGAAAAAGTGATTAATTATattagtttcatttcaaattttcgaaaaaattctcaatgcaaaaaatgacgCCTCCGTGCGAGTGGCAGGG
i caePb3.Scfld02_62     I 807 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  988542 254 -  1162296 I

a score=8527.000000
s ce10.chrX             1528079 247 + 17718866 -CCCCACCCACTACACCTGCTGTTTGTCTCATTTGTGATGGGAGAGAAAAAGGAGGGAAATTTATAGCACCAGCTGGTG-------------CGAAGTAGA-GTATTGAAATAAAAATGGGTCTTTGTTTCA---GGTTTTGCATGTTTTGAAATCT----------AGAATTTTCAG----AGGAAAGG----TGCAATTAAGTTGA---TGCAAGTAGAGAAGTACGTAGTTTTTGCGAAAT----------AAAAAAATTTAAATGGATTTTTTTCGGGGAGTATTGCGAAAT
s caeRem4.Crem_Contig24  988796 238 -  1162296 -CCCCGCCCGC-ACACCTGCTGTTTGTCTCATTTGTGA---------------GAGAAAATTTATAGC-TCAGCTGGTG-TGGCAGAAGATGCAAAAAAGACGGCCAGAGAGAAATATGTTTCTTTGTTcgaat-cttttttcagatttgaaaaaatcggggactgaatagttttaaaactcaaaaaagggCATTGAAGGTG---------TTCaaataatgtgaaatggagaaaaaacggatt-------cagtgaaaaatg----------------------aattgcgaaat
i caeRem4.Crem_Contig24 I 254 I 668
s caePb3.Scfld02_62      488431 261 +   783054 CCCCCGCAAGC-ACACCTGCTGTTTGTCTCATTTGCGA---------------AAGAAAATTTATAGC-TCAGCTGGTGACAGGACAAGGCGGGAAAACGA--GATGAAGAGATATGTGTTTCTTTGTCCCCTCACGTTTTCCaggttttagaatttt-----tcggatagttgtgaaaaatagaaaa------tgcaGGTAGGTTGATATTTCATTTGGGAAAAACTGGGATATGAACGAGTTattcctacaaaaaaaaacgaaaaaagtagTCCT-----GGAAATTGCGAAAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=762.000000
s ce10.chrX             1528326 66 + 17718866 ------AGGAGTGGGGTTTCGTTATTTTGAAGGCTGGTGTGATTTAGAAAATATAAAAA--------TGAAATGGAAATT
s caePb3.Scfld02_62      488692 67 +   783054 CCAGGAAGGAATAGGAGT------TTCTAAAGGT-------ATTtcgaaatcccaaaaaaggCTTTGTTAAATGGAAGTT
i caePb3.Scfld02_62     C 0 I 1329
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  989034 668 -  1162296 I

a score=0.000000
s ce10.chrX             1528392 743 + 17718866  
e caePb3.Scfld02_62      488759 1329 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  989034 668 -  1162296 I

a score=2222.000000
s ce10.chrX             1529135 66 + 17718866 TGGGTGACCGGAGACGGGTGTTGGGTGAAATGAATGGCGGGAGAAGACGGGCGGTCGAGTGATGAG
s caeRem4.Crem_Contig24  989702 57 -  1162296 TGAATGGGCGAAGACGGGCGGTGCGCGGGAAGAGAGGCGGAAGAAG---------TGAGTGATGGG
i caeRem4.Crem_Contig24 I 668 I 188
e caePb3.Scfld02_62      488759 1329 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1529201 50 + 17718866 GGCCGCGTGAAGAGACGCAGACGGTGTGAGGGAAGAACGTCTTGAGGCTC
e caePb3.Scfld02_62      488759 1329 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  989759 188 -  1162296 I

a score=3803.000000
s ce10.chrX             1529251 168 + 17718866 GTGTGGTCCGATTCTTTGAGGGAGAGAGCACAGTG-----------TGAGTGAAGAGACGCAGGTG-------------GTGGGAGAGGTGGGGGGGGGGAGGGGGTGC--------------------------------TGTTGACATAGTATAGGTTAAGAGTGTTAACCTTTCCTTACTC-----ATACTATTTTTGGAAAAAAATATGTATAAGAAAATGTCTG
s caeRem4.Crem_Contig24  989947 224 -  1162296 GTGTGGTCCGTCTCTTAGAGCAATCTCCCGCATTGACGGATTATGTTGgttggagagacgcagacattccTGAGAACCcattggaaagaagaaagaggagaagggGGACAGTGATcaattggagaagaaaagtgtGTCATATGTTGACATAGTATAGGTTAAGAGTGGTtaccttttctccttttttggatttgtttTCTAGgaggaaa-----ataggaaaatgtcTG
i caeRem4.Crem_Contig24 I 188 I 368
e caePb3.Scfld02_62      488759 1329 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1529419 1094 + 17718866  
e caePb3.Scfld02_62      488759 1329 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  990171  368 -  1162296 I

a score=8935.000000
s ce10.chrX             1530513 67 + 17718866 --TTTTTCC--ACGACCAATGAGTTCATCACCAAATATTGACCAACATCTTGATATTATGCTCCCTCTAAT
s caeRem4.Crem_Contig24  990539 67 -  1162296 tctttttgctaaCGAC----GAGCTTATCACGAAATATTGACAAACAACTTGATTTTATGGTCTCATTTCT
i caeRem4.Crem_Contig24 I 368 C 0
s caePb3.Scfld02_62      490088 70 +   783054 -ttttttcaggacGACCATTGAGTTCATCACTAAATATTGACAAACGActtgattttgtgctcttaTTAGT
i caePb3.Scfld02_62     I 1329 I 3739
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-443.000000
s ce10.chrX             1530580 205 + 17718866 TTGTAGCCCTTTTGGAGAAGACTGCTTGTGGAAAATTTAG-----AAAAGAAAATTATTTCCCGTGTAGAGCAAAATCAGCAAATTTTGTTGAAAATC--AATTTAAAAAAACTTGCTTGAAAAA----ATAATAATGGTGCATTTCTAAATTAAAAACCAAAAAATGTTTTTTTTTCCAAAAATTTTAACATTTTCCAAATTTAG---AAAACCCACT
s caeRem4.Crem_Contig24  990606 190 -  1162296 ATGCGGTCCAATAAGAAAAGG------GCTGGAAATATGGTACTTATGGTAAGATGGGTTTCCCCGTag-------------tagttttttaaagttcttgttttta------ttGCACAAGAAAGTTTATATTAGTTATGTATGTGCTATCTGACTAACATAGAattattcttt----gaaaattatagaataaaacaaatttttatcaaaattcacC
i caeRem4.Crem_Contig24 C 0 I 36
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1530785 29 + 17718866 ATTTCAATAACTAAAGATCTTCCGCAAAC
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  990796 36 -  1162296 I

a score=3298.000000
s ce10.chrX             1530814 186 + 17718866 AAATTCAAAACTGAAAAAAAATCAATCTAAATAAAAGTGAAATAAACGTAAAACAACTCGAAAATCACACAGAACAAGAGAGAAAGAGAAACACAAAAACTGACCACTTGAGAACCGTTTC-------TGTC--TATTTTTCATTAAGTGTTTGGAAGAGGAGGAAGAGACGGGAAATAATGTCCTCCTCTGGAC
s caeRem4.Crem_Contig24  990832 169 -  1162296 acattcaaaacaaaaagagaacccg-------------aaaatcaaaatatgatcatccaaaaa----aTGTATCTAAAGAG---TCGAGACACAAAAACTGACCACTTGAGAACGTTTTCTTCATCATGTCCGTGTTTTTCGATGGGT-----AGAGAGCGGGAGGGGAAGGCAAA-GATGTCTTGTTTTGTAC
i caeRem4.Crem_Contig24 I 36 I 604
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1531000 2552 + 17718866  
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  991001  604 -  1162296 I

a score=4024.000000
s ce10.chrX             1533552 154 + 17718866 ATCATTCATACTTCCTCC--CCCAACATTTTCTTACAAAAAAACCCCTCGGATGACTCAA------------AAATGTACACATAAATTAGAAACCCATTTCGCTAGCACCAAATTCATGACTCA-----------AGTGAAAAAATGTGGGGGGAAGGGGGGGGGGGGATGCAACATT
s caeRem4.Crem_Contig24  991605 173 -  1162296 ATCACTAACACCTGCtctaactcaaaaaatgccTATAATAGAACCACAAAAATGAGTCAACGTTCATAAGTAGAATGTACACATGAATTAGAAACCTATTTGGATAGC----AACTCATGACTCAGAACAGTCATGAAtggagaaa-gt-gaaaaaaagagaaggaggaagGCAACTTT
i caeRem4.Crem_Contig24 I 604 I 1633
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1533706 2510 + 17718866  
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               724674 3293 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  991778 1633 -  1162296 I

a score=668.000000
s ce10.chrX             1536216 25 + 17718866 AATCTACCCCACTCCTCGTACTTTA
s cb4.chrX               727967 22 + 21540570 AATTTCTCCCATCCCTCGT---TTT
i cb4.chrX              I 3293 C 0
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  991778 1633 -  1162296 I

a score=-3298.000000
s ce10.chrX             1536241 328 + 17718866 TGTTGACCTGTTGCTCACATGCCCTCCTGTT----TTCCTTTGCTCAGATCTGATCAACTAGCTTTTGTCTGGCACACTCTCTGATCCCTGTCCTATTTTCTTGC-ATCTTTCCACC----------------------------------------TCTAGACACTCTTTC---------TAGCCCTC----------TCGAACACTTAATAGTTTGTCTTGTGATT------TTTGCCGATTTCTCGTGATTTTTTCCCTTTTATTCTAAAC--AACAAATCTTTGTCGACTCGATTTATATTATAAAACGGTTATAAAACTGCGCAAAAAATGTTGCTCCATTTGAATGAGCTCGTGCTGGATTATATCGGAAAGCAGCTCAATGCGAAGGTTAGTG----
s cb4.chrX               727989 295 + 21540570 TGTTGACCAACTGCTCACA----------------ACTTTCTTCTCGAATCT-ATCATGTG---CTCGAAAGACAAA-GCGCGTATCTA-------TCTCTTTTc-atctttctttc-----tttctaaTAA-------------------------TCacgaaatattttcagaaaacatacGTTCACGTTTTT------------------GTTAGAGTTGAAGACATATGAT---CTTTTCTATTCCGACTTTTAAAAtcctttttgaaatcaattcaATTCTTG--------AGtaatattttag---------------------aaaatgcTGTTGAAGCTGACGGATGTGGTTCTGGACAAATTGGGAAAAACTCTACCAGCAAAAGTTGATCTTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  993411 354 -  1162296 TGTTGACCTACTGCTCATAtgccctctctctctctcattttttccccaattt-ctcttttatttctcctcaacatca-tcgcctatctcc-tcatttttcttttctctctttgtttATAACGTTATCAATAAGATCTGTTATGCATCTCTGCGAccctcaaaaatcactctc---------tcgctttcttttttacttttgaacACTTGCTAGTTTGTCTTGTGATTCGATAATTCGCCGGTTTCTCGTGATTTTGTGTTTGCTTATTCAATCTAAAtggatatttt------------ttgtttcag----------------------agatGTTGCTCCAACTGGATCAGCTTGTTCTCGATGAGATTGGGAAGATGTTGCCAGCAAAAGTGGGTG----
i caeRem4.Crem_Contig24 I 1633 I 390
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-61.000000
s ce10.chrX             1536569 39 + 17718866 AATAATTTTGGTTTGACT------TTTAAATTTAAAAACTGCAAT
s cb4.chrX               728284 34 + 21540570 GATGGTGATGGTTTGAAtgtatatttttgattt-----------t
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  993765 390 -  1162296 I

a score=10594.000000
s ce10.chrX             1536608 119 + 17718866 TTCAGGACCTTCTCCGGCTCTCCATGGCTAATAAAGCTCTGCGG----GGGTTTTTCGATAATGAGTGTTACTGGCAGAAATTGATGTTTAAGCGGTGGTGGGTGGATCGGAAATTTGTAAGT
s cb4.chrX               728318 119 + 21540570 ttcaggatcTCCT----TTCTTTATCACTGGTTCAGTCCTCTCTAAACGAGTTTTTTAATAAAGAAGTGTATTGGCAGCGGCTGATGACCAAACATCTTTGGATCGATCGGAAAATGGTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  994155 119 -  1162296 TTCAGGATCTCATCCGCCTGTCCATTACTTGCAAAGCACTCCGT----GAGTTCTACAACAAGGAGACCTACTACCAAGCCTTGATGGCCAAACAGTTTTGGATTGACCGCAAATTTGTAAgt
i caeRem4.Crem_Contig24 I 390 I 27
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=91.000000
s ce10.chrX             1536727 1 + 17718866 T
s cb4.chrX               728437 1 + 21540570 T
i cb4.chrX              C 0 I 337
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994274 27 -  1162296 I

a score=0.000000
s ce10.chrX             1536728 562 + 17718866  
e caePb3.Scfld02_62      490158 3739 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               728438 337 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994274  27 -  1162296 I

a score=457.000000
s ce10.chrX             1537290 51 + 17718866 tttaaaaaaaaaCCTATAACATTAGATAATGTCTTTTATTAACATACCCCT
s caePb3.Scfld02_62      493897 51 +   783054 TTTGAACGGaagtttgtgagtttttatatCAAGTTTTGATGGCATGTTCGC
i caePb3.Scfld02_62     I 3739 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               728438 337 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994274 27 -  1162296 I

a score=176.000000
s ce10.chrX             1537341 3 + 17718866 ACA
s caeRem4.Crem_Contig24  994301 3 -  1162296 ACA
i caeRem4.Crem_Contig24 I 27 C 0
s caePb3.Scfld02_62      493948 2 +   783054 -CT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               728438 337 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=25025.000000
s ce10.chrX             1537344 166 + 17718866 TTCCAGTTCCGCTACCAAGACGACTACCTCTTCATCCTGAACAATTTACCCGACCGTCTCCAGGAAACCACAAACTTTGACAGGAAAAACGTGCGATTCGTTTCATATTCCCACGATGGAGCTGTGATGGCAGTCTTTGCCAATGGGTGTACTCTTTGGGTTTGTT---------------------------
s cb4.chrX               728775 166 + 21540570 tttcagtttcgctCCAAAGATGATATACtttttttACTGAACAATACACCAAGTTGTCCACAAGAAACATTTGATTACGGAGAGAAAATCCTGAGATTTGCCACATTTTCAAACGATGGATCGATGCTTGCTGTCATTGGAAACGAGTGTAGATTATGGGTCAGTT---------------------------
i cb4.chrX              I 337 I 34
s caeRem4.Crem_Contig24  994304 166 -  1162296 TTTCAGTTCCGCTACCAAGATGATCTCCGTTTTGTATTGAACAATGTTCCTTCTCGTTTGCATTCAATCGAGCAATTCGGACAGAAAAAGATTCGATACGTTGCTTTCTCTCATGACGGGTCTATGATGGCTCTATTTGCAAATGGATGCAGAATTTGGGTTGGTT---------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      493950 193 +   783054 TTTCAGTTCCGTTTTCAAGACGATGCTCAGTACCTGTTGAACAACACACCGGACCGTCATTTTTACACAGAACAATTTGATCAAAAGGTTGTTCGATATGCTATTTATTCACATGACGGAACAATGTTAGCTGCTTACGGCAATGGGTGCAGATTATGGGTTGGTataactttattttttaaaagaatttttt
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-8278.000000
s ce10.chrX             1537510  98 + 17718866 CGATATGaagccta---------agcttaagtccaagtttaagcc----------------tacgcctaaaccaa----agcctaagcataaagctgagcctaagcctaacccAAACAAAAAAAGAT--------------
s caeRem4.Crem_Contig24  994470  36 -  1162296 -----------------------ATTGTCAATTCAG----AGATTGTTT------------TTCAGTTACACTAG------------------------------------------------------------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      494143 137 +   783054 cga----aaacatagaaaaaaaaaatctaagatCAAGGTTAGATTATTCATATCagtgaaattcaaataaaCTACTAAGAACTTAATAATAAAAAGTAACATCATCACATTTtcttcaaggaaaaaaaactcagtaCTGAT
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               728941  34 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=27949.000000
s ce10.chrX             1537608 222 + 17718866 TTTCCAGGTTTATCGAGAAGATCAGGACATGCTAAACTGCGAACTTCACGAGGAACGCGGCTGGGACAAAATCCTGTCCGTCGAGTTCTCGCCAGACGATTCTCACCTACTCGTAACAGGCTCTAGAGATCAGTTTAGAGCCTTGACGAGAGACCACGAGGTTCTAGTCTTTAAAATTGGAGGTGTGCTTCTGATAATTTCACCCGATAG-AGCCTGA-------AAATT
s cb4.chrX               728975 218 + 21540570 TGTTCAGGTATAtcgagaggaagaagagattTTATTCGTTCAGCttcatgaaaaaagaagatggaaTAAAGTGCTTTCTGTTGAATTTTCTCCAGATGACAATCATATTCTAATTGTTGGATTTATGGAAGAAATTCTAGCGATGCGTCGGAAAAATGAAGCATGTGTGTACGAACTTGGAGGTATG-----gcaacttttattttttgacaacttGT-------AAATG
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig24  994506 221 -  1162296 TTTTCAGGTGTTCCGTGAAGACGAGGAGATTCTTCACTCCTACCTCAGTAGAAAACGTGGGTGGGATAAGGTGATCTCGATGGAGTTTTCTCCAGATGACGGTCATTTGTTGGTAACCGGGTCCAAGGAAGAGCTGGTAGCGATGGCAAGAGGAAACGAGGCACTGATTTATAAGCTTGGAGGTG---------AAATTTAATTATCTAGACGTTAGTTATactaaaatt
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      494280 208 +   783054 GTTCTAGGTATTCCGAGGAGATGAAGAGATACTCCATGTGTATCTCAGTCGAAAACGTGGATGGGATAGAGTCATTTCTTTGGAGTTCTCTCCAAATGATGAACACATTCTGGTGACCGGAAGAAAAGAGGAGTTAGTTGCTTTGAGCAGAGGAAACGAGGCACTAATTTATAAATtgaatggtg---------------agtttttcataagtttga-------aaatt
i caePb3.Scfld02_62     C 0 I 149
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=8621.000000
s ce10.chrX             1537830 115 + 17718866 TTCAGAAGATTCTGCTTCCCTAAGATCTTTCATTGATATCGATCGGAACATGTTGGCTACTTGGTTTGACAACTCTCATTTTCTCTACATGCAAAGTGGCGGAGAGTAGGTTTTT-----
s cb4.chrX               729193 115 + 21540570 TTCAGAAGATCATGCGCGTCTCCATTCATTTAATTACCTTGATCAGGGAATGCTCAGTACATGGTTGGACAATAAACACATTTTATATATGTCGAATAATGGAATGTTGGTTGTT-----
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig24  994727 120 -  1162296 tcaagaagaCTATGCCACTCTCCGCTCTTTCATCAACCTTGACCAAGGCATGTTCAGCACGTGGTTCGACAATCAAAACGTCATGTTCACTCAGAATTTTGGAATGTAAGTGGTCTTTTc
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      494488 149 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-192.000000
s ce10.chrX             1537945 34 + 17718866 TTGGTTTTCAACTTGTCCGGTTAATGTAAATTGA
s caeRem4.Crem_Contig24  994847 31 -  1162296 ttaaaattaaacaaaaacagtcaa---aaatccG
i caeRem4.Crem_Contig24 C 0 C 0
e caePb3.Scfld02_62      494488 149 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               729308 30 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1537979 11 + 17718866 TTTGTGAACAT
e caePb3.Scfld02_62      494488 149 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               729308 30 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994878  0 -  1162296 C

a score=890.000000
s ce10.chrX             1537990 89 + 17718866 TGAAAAATCGGCAACGGTTTAGTGCTATGGCAAATCAAACCCTCTCACAATCATTAGAATACCACAAAATACTCACAAATCCCAAAATT
s caePb3.Scfld02_62      494637 63 +   783054 taaaaaatcagaa--------------tgaaaaattgaat------acaattttt------tctcaaaattttttcgaatctcaaattt
i caePb3.Scfld02_62     I 149 I 181
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               729308 30 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994878  0 -  1162296 C

a score=0.000000
s ce10.chrX             1538079 273 + 17718866 AAGGCCCCGCTAAATTAAGGCTCCGCGTTAAGGGTCGTTTTATGGAAGCGACCCCCCGCCCACCAAATGATGCATCccgacatctcacgggtcttgttttctacaatgttcaccttgctgtgggcgtagcagcgcgccacacacataacgagatccacgtaatgaactgcggaacccgtgagatgtcggGATACCAATTGTTCAGAGGACAGGGAGGCGGTTCGGATTTTTGCATACTCGCCACGCAGTTTTTTCATTACGAGTGTATCATCA
e caePb3.Scfld02_62      494700 181 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               729308  30 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994878   0 -  1162296 C

a score=-761.000000
s ce10.chrX             1538352 2 + 17718866 AA-
s cb4.chrX               729338 2 + 21540570 -ag
i cb4.chrX              I 30 C 0
s caePb3.Scfld02_62      494881 2 +   783054 -at
i caePb3.Scfld02_62     I 181 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  994878 0 -  1162296 C

a score=46062.000000
s ce10.chrX             1538354 204 + 17718866 TTTCAGAAGAGACCGAATGCGGATCTTCATGAGTTCTGTGAACTTTTCCGATGAGATCATCGTCTACCCAATCCTGAGTTTCGACACGAAAATTGTAAAAATCCTTGTCGCTCAGCACGTCTCTCCTCGGACTCGGAGAATCACACAGATTGCTGACCAGGCACAGGAGGAGGGGAAGGTCCTTTTTTTTGGCTATCAGCTCAA
s cb4.chrX               729340 191 + 21540570 tTTTAGGAGAGACAGAATGCGAATTTTCATCAGCTCCATTGATATCTCCTCCGAGATTATGATTTTCCCAATTCTCACGTTTAACACTCGTGTCACTAAAATTTTGGTAGCCCAGCATGTTTCTCCAAGGACCCGCAAAATCACACAAATCGCAGATCAAGCACAAGAAGAAGGGAAAGTGAgtcgttcaa-------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig24  994878 204 -  1162296 TTTCAGAAGAGACAGAATGCGTCTTTTCATTAGCACTATCGATATGGCTGCTGATATCTTGGTCTATCCTGTTCTGACGTTTGACACTCGTATCACTGGAATCATGGTAGCCCAACATGTGTCTCCGAGAACACGCAAAATTACTCAAATTGCCGACCAGGCGCAAGAAGAGGGAAAGGTCAGCCTTTTTAATCGTGAAATTGG
i caeRem4.Crem_Contig24 C 0 I 452
s caePb3.Scfld02_62      494883 202 +   783054 tttcagaagaggaCGAATGCGTTTGTGTCTTAGCTCACTTGATATGGCTGCTGAAATCTTAATGTTTCCAATCCTGACTTTCGATTTTCGTATAAACAACATCACTATAGCTCAGCATGTTTCTCCACGAACGAGAAAAATTACTCAAATAGCTGACCAAGCACAGGAAGAAggaaaggtaattttttttggttttgaggtt--
i caePb3.Scfld02_62     C 0 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-763.000000
s ce10.chrX             1538558 16 + 17718866 AAAA--AACCATT----------TTTAA
s cb4.chrX               729532 28 + 21540570 aaaattgaccattattttttttgttcaa
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig24  995534 15 -  1162296 AAAA--GAACAT-----------CTGAA
i caeRem4.Crem_Contig24 I 452 C 0
s caePb3.Scfld02_62      495085 10 +   783054 --------tcatt----------ttcaa
i caePb3.Scfld02_62     C 0 I 1438
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=74074.000000
s ce10.chrX             1538574 279 + 17718866 ---------TTCCAGACTCTCACCCAAAAATTAATCGACATCGGTCTAGAATCAGGAGTTGACGTCACAAATATGAGTGAGCTAAGAGCAATTTTAGACCAAGAAACCCAATGTATGCCGTGCTACCGACTGCATTCTCATCACGACGCAATTCCAACGTCCAGGTGTACTTGTGAGTGCCATCACAATACCGATAAGCTGCTCATTTTTCATGGAAGTGATGAGAGGGTGCACGTCAAGGTGATCACGGAGACGTTGTTGGAGAAGGCGAGGGAGGCGAATC----GGAGA
s cb4.chrX               729560 285 + 21540570 tttggTTGTTTTCAGACtctttcccaaaaattgttcgaaatcGGACTGGAGTCAGGAGTCGATGTGAATAACATGCAAGAGCTGCGAGCCATTTTGGATCAAGAGTCGCAGTGTATGCCATGCTACAGATTGCACTCTCATCATGACGCCGTTTCCCAGAGAAATTGTTCATGTCAGTGTCATCACAACACTGACAAACTTCTTATTTTCCATGGAAACGACGATCGTTTACATATCAAAGTGATTACTCATCGACTTCTTGAAAGAGCTAAGCAAGC---TT----GGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  995549 278 -  1162296 T-------TTTCCAGACTCTAACCGAAAAACTCATCGAAATCGGTCTCGAATCCGGAGTGGACGTCACCAATATGCAAGAACTGCGTGCTATCCTTGACCAGGAGTCGCAATGCATGCCATGCTACCGTCTTCACTCTCATCATGACGCCGTTTCGCAGAGAGAGTGTCAATGTCACTGCCATCACAACACTGACAGACTTTTAGTCTTTCATGGAAACGATGAGCGTGTTCATGTAAAAGTTATCACTGAAAGGATTCTAGAAAGAGCCAAGCAGGC---TT----GGAGA
i caeRem4.Crem_Contig24 C 0 I 42
s caePb3.Scfld02_62      496533 279 +   783054 ---------tttcagacactgAATCAAAAACTAATCGAAATTGGCATGGAATCTGGAGTAGACGTCACCAATATGAACGAATTGCGTGCGATTCTGGACCAAGAAACGCAGTGCATGCCTTGCTACAGACTACACTCTCACCATGACGCTATATCATCAAGAGATTGTCAATGTCAATGTCATAACAATACTGACAAATTACTGATATTCCATGGGAATACCGAACAAGTCCATGTGAAAGTCATTACAGAGAGGATACTGGAAAAGGCCAGAGAAGC---ATTCAGGGAG-
i caePb3.Scfld02_62     I 1438 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-202.000000
s ce10.chrX             1538853 19 + 17718866 CGAGGGTTAGTTGTACGTA
s cb4.chrX               729845 11 + 21540570 -CAACGTGGGTA-------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_62      496812 19 +   783054 AGAGGGTGAGTGATACATA
i caePb3.Scfld02_62     C 0 I 830
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  995827 42 -  1162296 I

a score=-4285.000000
s ce10.chrX             1538872 303 + 17718866 TGTGGTTTCAGAGGAACATGGTGCATTCATCCGGTTAGGGCTTCCAGGTttcagggcctcacgcctcatggcttgaattcaaaagcttagttttcgcaccacatagtgcaaaaggtggttcttgcgcagcgaccgacacttttcgggttccgcgcggcacagcacggatcgcggcgtggcggtcgttttggagcctgcatggAAGCCCTAGACTCCGTATTAGAGCTGGCAAAAAGGTAGCCTACATAGTAATTTTTTGTAGACCATGTGGGTTGACTAGACCTTTTTCCAACCTTCACCTTT
s cb4.chrX               729856 125 + 21540570 AGTGATTTT----------------TGTACCCAGTTAAA----------------------------------------CAAAA---------------CGAACAATTTAAATAATGA----------------------------------------------------------------------------------------------------ACTAGAAGCCAAAAACATATATTCTATAAATCggtttttaattgatt-------tttgccAAAATTATTTCTAGTTTTCACAATT
i cb4.chrX              C 0 I 62
e caePb3.Scfld02_62      496831 830 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  995827  42 -  1162296 I

a score=0.000000
s ce10.chrX             1539175 96 + 17718866 AAGAATAGGACCGAAGATAAGCTCTAAAAGCCCAGGGCTTGATTCTGAAAACTAAGTGCTGAAAATTCGTAGAACCTTCTACAGGCCAACCTAAAC
e caePb3.Scfld02_62      496831 830 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               729981 62 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  995827 42 -  1162296 I

a score=365.000000
s ce10.chrX             1539271 27 + 17718866 AAGGATCCATTCATTAAAAAAAACCAC
s cb4.chrX               730043 27 + 21540570 aaaaattgaatcataTTAAATATTCAT
i cb4.chrX              I 62 C 0
e caePb3.Scfld02_62      496831 830 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I
e caeRem4.Crem_Contig24  995827 42 -  1162296 I

a score=-155.000000
s ce10.chrX             1539298 32 + 17718866 AGATATCTCTTCAGAGACCCCGAAGGATCCCC
s cb4.chrX               730070 26 + 21540570 ------TGATACAGTGACGTGGAAGAGGATGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig24  995869 32 -  1162296 gtttaatttttcagagaaaatgatgaggaTAT
i caeRem4.Crem_Contig24 I 42 C 0
e caePb3.Scfld02_62      496831 830 +   783054 I
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=54217.000000
s ce10.chrX             1539330 371 + 17718866 GGACCGTAATCGCCTCTACTTTCCTCTCAACCACTGCACAGTCTTCGACACCGTGGACCACGTGTTCAGAACCGGCGCATCGCTTGTGGACAGCTCCATGTGCTTGACACCCGACAACAAGTACCTCTACGTCACTGGGACAACAAAGCGTTCGGTTGATGGGGAGATTGTATTCGAAGTGAGGAGATTTGTTTGTTTATTTTGTAGTACTCAT--GGGAG-----------TTGTTTTCAGGTGAAGCCGATCTGCCTGGATTTGGATACGATGGTGCTGAAGAATCAGCCGGATTTCACAAATATTCCCTGGGTTGATTGTGACTATGAAGTCAGAGTTACTGCGAATAATGATTTTGTGGCAATGTAGGTGTATTTTCCGT
s cb4.chrX               730096 367 + 21540570 TGACCAGAACCGCCTATTCTCTCCACTGCTACATTGTACATCATTTGATACCGTGGATCATGTTTTTCGAACTGGGTTTTCTCTATTGAAAAGCTCCATGTGCTTTTCTCCAGATCACAGATATCTTTATGTTACCGGAACTCgagaagctgaaaaacctaaagaTCCAATAATGGAGGT-----------ATTAATCACTTTGGACTGTTAAC--GTGACGTACATTATGCAAAATTACAGATTAAACCAACTTGTCTTGATCTCGAAACAATGGTAATTAAAAGCACAccggatttttcaattcaccCGTGGGTAGAATATGATTATAGTGCCTGTATCACTGCAAACAACGACTTTGTAGCTTTGTGTGTTTT----CAGT
i cb4.chrX              C 0 I 3005
s caeRem4.Crem_Contig24  995901 361 -  1162296 CGACCAACATCGTCTTTTCTTCCCAATCGCCCTCTGCAATGTTTTTGACACCGTGGACCATGTCTTCCGAACTGGACTATCTCTTGCTCATAGCTCCATGTGCTTTTCACCAGATCACAGATACCTCTACATCACTGGAACTCGCAAGGCTCCACGTCCTAGAGATCCTATTATGGAggt-----------atagtttttttttcagtgttatcTAGTATCCAACACATTCCATTATTTCAGATCAAGCCAAGCTGTCTTGATTTGGAGACAATGGTTTTCAAGCATGTCCCTGATTTCACAATCCGACCATGGGTAGAGTATGAATTCTGCGTCCGTATCACTGCCAATAATGACTTTGTTGCCATGTAAG------------
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      497661 365 +   783054 ggaaCAAGACCGTTTATTCGCTCCATTATTCCTCTGCACTCAATTCGACACAGTAGACCATGCCTTCAGAACCAATCTTGACCTTTCAAATGCTGCTATGTGTTTTTCTCCCGACCATCGATACCTTTACATCACAGGCACCAGGAAAGCACCGAAACCTAGAGATTCATCTTTGCTGGTGA-GAGAACccacagaatttttttcaatgtaatt------------------ATGAATTCAGATCAAGCCTACTTGTTTGGATTTGGAAACAATGGTTGTGAAGAACATGCCAGATTTCACTTTCCACAACTGGGTGGATCATGGATATACCCCAAGAGTTACAGCAAACAATGACTTTGTTGCGATGTAAGTTTTATGACAGT
i caePb3.Scfld02_62     I 830 C 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=-1121.000000
s ce10.chrX             1539701 356 + 17718866 ----------------------------------------------------------TTCTAAATTGGTAGCTAAATTTAT-----TTCGTTTATAACTTTTGTGTCACAAA-----------------ATTTTGAAAGCCCAGCCGACATTGATCAAGGACCAATTACAGAAAATTTCTAGCATTAAATTGTCTGCGTCTTTCAGCTTACACGTTTCAGGTACAAAATTAGAAATTTCTAAATTTCTTTTCCAGATTCTCCGGTCATGACGTCGCCATCTGGTCTTCCTACCACCGCGGCCACATAGCCGCTGCCTT---ACACTTCGACGGCCCCGTCTCCTGCGTCGCACTCCATCCCTACCAAAATTCCATGTGCGTCACAAATGAGAAGCTCGTCCACTTCTACCATAGTCCCGTCATGGCTCAAGAAGAGGA-----
s caeRem4.Crem_Contig24  996262 242 -  1162296 ----------------------------------------------------------Ctctaatt------------ccat------------------------------------------------tttttgaagatttattTCTAAATA------AATCGTC---------TCATTA---------------------------------------------------------------------TTCAGTTTCACTGGTCAAGACGTTGTCATCTGGTCAGCATTCCATCGCGGCAACTCTGCAGCTGTTCTTCCACAATTTGGGGCTCCAGTGTCTGCAGTGGCTCTCCACCCACTCACAAACCAGCTGGTTGTGACTAGTGAGACTCGCATTCATTATTTCCAAAGTGCGGAGATGTTTCAAGAGGACAAGATGA
i caeRem4.Crem_Contig24 C 0 C 0
s caePb3.Scfld02_62      498026 402 +   783054 TTTCCGAAGTTGAgatcaaaactgttttgtcATTCACGTGAAAAATGGtaataacattttttaatttgggACTGAAACCCGTGGTTGGTCGAATGCAAATTCT-----ACTGACTTCCCggattatttcatttttgaagacctGTTTTTTGTTAATCGTGAATTGAT---------TTACTAGAGACAAAGTATCTGT-------------CACAAACCAGGAAAAAA----------CCTGAACAACCGTTTCAGCTTCACGGGACAAAATGTGATTATTTGGTCAGCTTTCCATCGTGGTAGCCCCGTTGCTATCCTGAATCATCCCACGTCTGCTGTATCTTCTGTGGCTTTTCACCCACTCAAAAACTTCCTAGCGGTAACTAATGAATTACTGGTTCATTATTATCACAGTCCAATAATG--gcaagagaagaaaa---
i caePb3.Scfld02_62     C 0 N 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               730463 3005 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=553.000000
s ce10.chrX             1540057 16 + 17718866 AT---AGCACTGACGAAAA
s caeRem4.Crem_Contig24  996504 19 -  1162296 ATGAGAACACTGAAGAAGA
i caeRem4.Crem_Contig24 C 0 N 0
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               730463 3005 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=0.000000
s ce10.chrX             1540073 1253 + 17718866  
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               730463 3005 + 21540570 I
e caeSp111.Scaffold514   109327 3317 +   141934 I

a score=6802.000000
s ce10.chrX             1541326 417 + 17718866 TACACGCTTATCAGTTTTGTGAACAGGGAGGTTCCCGGATTGTGG-TGACGCCCTGTTCACTTTTTGAGCCACACTCT-TTTTATAGTTTGTTTGTTCCAGTTTCG--ATTAGTCAGATGGTTTATAACTGCTTGGTTTCCTAACTTTGCTATCTTTGAGA----AATATTACATA---------TTTGACCTTGATCTACACTATACTTCCATTATCAGTTTTTTTTGGGAGCTTGTATCTAGATTGAATTGGCAAAAATAGAAACTAGAAAGCAAGATTTGTATTGTTGCTCCAAAAGCTTTTTTCG--CAATTTTTCAATATGTACGGGGTTTTA--GTTATTAATTTAA----------------------GAAGCATTTTAGCAGTTTTTG-------------GAAAATAAAATTTTTCCAAAAAAATTTTTTTTTTCAGATTTTTTTTTCGAAAAAAAAATCAATA
s caeSp111.Scaffold514   112644 433 +   141934 TAaattcttatcagttttatGAACAGGGAGGTTCCCGGATTGTGGACGACGCCCTGTTCGttctt---------ctctattttattatttgtttGTTACGGTTTTGATATTGGTCAGCTGGTTTATAGCACttccagtttttgattttcccaTTATTTTGACCTTAATagtaaaaaaggaaacgtTTTGTTCTTCATCAATGC----CTTTAATTGTCTCTTAATTTGAAGTGCCTTCGGACAGCTTGAA-------------AAGTTAAACAACA-------TACAGTTAATC-----GCTTTTCTTGGTAGAATTTTCA--GTGGCCGGGCttttgtcgttatgtgttcaactttatttttattctgtttttcggcatatttttgcaattttaGTTCACTTTcttatgaaaataaaaatgttaaaataaaaatgtttgccaaaaacagtattctacaataaaaaatacata
i caeSp111.Scaffold514  I 3317 I 1662
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               730463 3005 + 21540570 I

a score=0.000000
s ce10.chrX             1541743 1696 + 17718866  
e caeJap4.Scaffold16506   51704 28405 +   115485 I
e cb4.chrX               730463 3005 + 21540570 I
e caeSp111.Scaffold514   113077 1662 +   141934 I

a score=2724.000000
s ce10.chrX              1543439 176 + 17718866 CTCCTCCAAAC--ATCCTCTTTC----CTGCAACATTTCACACCTCTTGGCACAGATTATCACCGTATTACCCTAGCTTGTATTTCAACGCAAGAAGTGGTG----------CTTCACGTCTTAAATCATTGTGCATTGAGCTGAAGGAGCTGAAGAAAAGGCGTGATAATACTCG----GAAAGGCTGACGCACT
s caeRem4.Crem_Contig196  119691 189 +   199417 CTTCTCCGAACCGATTTGCTTCCACCCCTCCCAATTTCAACACCTCT-AACAAAGATTATGACAGTATTACCGATGTTTTAGATGTAACGAGCAAAGAGGGGGAAGCAAAAATTTCACGCCCCAAAATGT-GTGTATTGCAC---AAGAGC--ATTGCGAAGCGCGATAATACtcgaaacgagaaaatgaCGCACC
i caeRem4.Crem_Contig196 N 0 I 20
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeSp111.Scaffold514    113077 1662 +   141934 I

a score=0.000000
s ce10.chrX              1543615 18 + 17718866 TGGAATGTTTGGCAGAGT
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeSp111.Scaffold514    113077 1662 +   141934 I
e caeRem4.Crem_Contig196  119880 20 +   199417 I

a score=3304.000000
s ce10.chrX              1543633  96 + 17718866 AAAAGGGAGTACTATCAGT----------------TTTCTGAAAATTTTCGAATTGAAGGAGGAGGACGGGG---------------GTAGTGATAAGACTGTG-AAAGAAGGCACTAGTGGCGGCCA
s caeRem4.Crem_Contig196  119900 127 +   199417 AATAGGGGTTGTTATCAGTAACTGGCCGTATTCAAttgatggaaatttttgagt-gaaggAGTAAAATAgggagaaaaggagagaggGAAGTGATAAAATTGGGCGAAGAAGGCACTAGTGGCGGCCA
i caeRem4.Crem_Contig196 I 20 I 2688
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeSp111.Scaffold514    113077 1662 +   141934 I

a score=0.000000
s ce10.chrX              1543729 3672 + 17718866  
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeSp111.Scaffold514    113077 1662 +   141934 I
e caeRem4.Crem_Contig196  120027 2688 +   199417 I

a score=574.000000
s ce10.chrX              1547401 29 + 17718866 AACCTCAAATTTTTTATTTTATT-GAACTT
s caeRem4.Crem_Contig196  122715 30 +   199417 aatcttaacttttttgtatgatttGTGTGT
i caeRem4.Crem_Contig196 I 2688 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeSp111.Scaffold514    113077 1662 +   141934 I

a score=235.000000
s ce10.chrX              1547430 30 + 17718866 --TCAATCTCATTTCTCATATTTTTCTATTCG-
s caeRem4.Crem_Contig196  122745 30 +   199417 --TTCTTTTAACTTcttatattctttttctca-
i caeRem4.Crem_Contig196 C 0 I 9
s caeSp111.Scaffold514    114739 33 +   141934 TCggctttttttttcaaattatttttttgttag
i caeSp111.Scaffold514   I 1662 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I

a score=-331.000000
s ce10.chrX              1547460 16 + 17718866 C----CGTTTTTTCGCCTT-------T
s caeSp111.Scaffold514    114772 27 +   141934 ctCAACAGCTTTTTGctttaaaattgt
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I
e caeRem4.Crem_Contig196  122775  9 +   199417 I

a score=-620.000000
s ce10.chrX              1547476 19 + 17718866 -CCAAATTCTAGTCCACACA------
s caeRem4.Crem_Contig196  122784 25 +   199417 -CCAATTTCAACTTCATAATAAATTA
i caeRem4.Crem_Contig196 I 9 C 0
s caeSp111.Scaffold514    114799 25 +   141934 ttaaatTACAAAGTTATAACAAACT-
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                730463 3005 + 21540570 I

a score=47228.000000
s ce10.chrX              1547495 258 + 17718866 TTCCAGACATGAAAGTGCCGCGTGGCATTGGTCTTGTCTTCATATTTGCGGTGGCCGCCGCGTTGGTGGCCGGCCTCATCCTGACCATTGTCCTCGTCAGTCGG---------------CCCA---GT-------------CCAGCAGAGCGTAAGTAGT------------CCTTCAA-------------------------AGTCCTTCAATTTCAATAATCTCCTAC----------ATTTCAGCATT---CACTGGCCGTGTCATAACTGTGGGTATCTGTAATTCCGGGTCAGAGCCTTCAAAAGCTTCGAGCTTCCGGTTTAAGCGGGATGC
s cb4.chrX                733468 277 + 21540570 TTCCAGATATGAGGGTGCCACGTGGCATAGGTCTCGTGTTTATAGTAGTGGTGGCCGTTGCGCTAGTGGCTGGCCTTATATTGACAATTGTCCTCGTTAGTCGA---------------AGCAAGGGT-------------GAAGGTATTGTTATATTTTGaggaacac---atttttg-------------------------aacgatttaaactttaaaaatatttaaaaatatatatatttcAGCACC---TGAGGGTCGTGTCATTACTTTGGGTCTCTGCAATTCAAACTTGGAGGAGCCAATGACT---AGTTTCCGTTTTAAAAGGGATGT
i cb4.chrX               I 3005 I 6
s caeRem4.Crem_Contig196  122809 263 +   199417 TTCCAGACATGAGAGTGCCACGTGGCATTGGTCTTGTGTTCATGGTAGCGGTGGCCGCCGCATTGGTGGCCGGCCTTATCCTGACCATTGTCCTTGTCAGTCGA---------------CCCA---GT-------------GCAGCTCCGAGTAAGTTCTCAAAAG------ATTTCGA-------------------------GGTGTTTTGA---TTGAAAccctttaa--------ttttttcagcctCAGACGATGGTCGTGTCATAAACGTGGGCCTTTGCAATTCAAATTTAGAAGAGCCTCAGCAA---AGTTTTCGGTTTAAACGAGATGT
i caeRem4.Crem_Contig196 C 0 I 12
s caeSp111.Scaffold514    114824 325 +   141934 TTGCAGACATGCGagtgccacgtggcattggTCTTGTGTTTATCATAGCGGTGGCAGCTGCGTTAGTGGCCGGACTCATCTTGACCATTGTCCTCGTCAGTCGatcatcttctgaaaatagtaaGCGTTTTCAACTTTTAAACATGAACAAATAATTTATCATGAGAGCACAGTTTCTGCTAAAAATTACTTTGTTCCGAGAATAACATTTTGCTTTGTGAATCTGATGAG--------CTGTTGCAGAATT---TTCTGGTCGTGTCATAACTTTGGGACTGTGCACTTCAAAATTGGAAGCTGTTGACACa---agttttcgtttcaaaCGAGATAC
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I

a score=-1441.000000
s ce10.chrX              1547753  9 + 17718866 --AACGACAAG-------
s cb4.chrX                733751  9 + 21540570 --ATCATCTTC-------
i cb4.chrX               I 6 C 0
s caeSp111.Scaffold514    115149 18 +   141934 AAATCAACCAAAATGCAG
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeRem4.Crem_Contig196  123072 12 +   199417 I

a score=7652.000000
s ce10.chrX              1547762 155 + 17718866 TTGCTCATTCGATGCGGTAAAAAT-----TAGAGTTTAAAATTTTAGATTCAAAACTAGATGAATTTCAGAACCGGGATCAGTTGAAAAATTTCTTATCCAGTTCAGCGGCAGACACCAGCTTCATTGTAATGTCCTATTCAGACAAGCCTTCGGTGAGC
s cb4.chrX                733760 155 + 21540570 TTGTAATTTCACTTCGGTTAGTataatactgaaatttttgataacgtAT---GACTTTCCT--TTTACAGAATAAAAACCAAATGAGAAACTTCATAAACAGTGTTTCATCTGACACCAATTTCATCTTTATGCCATATGCAGACTCCGCCACTGTAAGC
i cb4.chrX               C 0 I 82
s caeRem4.Crem_Contig196  123084 151 +   199417 TTGCAACTTCACCTCGGTAAATGT-TTTCTGCActttt--atgtcattt------tttcccaattttcagaacaagaaTCAACTAATGAAGTTTATCGAAAGCACCACGGACGatgtaaatttcaaattgatttcgTATTCGGATTCGGCAACAGTGAGT
i caeRem4.Crem_Contig196 I 12 C 0
s caeSp111.Scaffold514    115167 143 +   141934 ------TTTCTCATCGGTAAgctttttattg---tttt--ctgttaTATAGAGAGTAActt------cagaacaaaaattcTCTGGCAAACTTTGTCGAAAGTTCCACAAAAGATGTGAATTTCATTCTTATTCAATACGCTGATGATCCAACGGTAAGA
i caeSp111.Scaffold514   C 0 I 3
e caeJap4.Scaffold16506    51704 28405 +   115485 I

a score=-13945.000000
s ce10.chrX              1547917  86 + 17718866 ---ATTTATTCTAGGATT-CTATG---GACAAAAAATTACAT--------TTCA--------------------GCCATCAACTGTATTGCCCAGAGATCAAGCTATAGAATTGCTAAATA-----------------------------------------------------------------------------------------------------------------------------------------------
s caeRem4.Crem_Contig196  123235  91 +   199417 ATTATATCTTTCAAATTTACTATA---------GATTTACActaatttgtttca--------------------gaaaacttcttTA--ATCAGTAAAAAACA--------------------------------------------------AGTTCTG---------------------------------GCCCAAC------------------------------------------------------TGACA-----
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    115313 260 +   141934 ---ATATTTTTTACGATTTCAATAACAGACAGGGAATtgcaa-aatatttttcaaacgtgGTATTCAATGCCACAAAAACTTTCTCACtgttaagaaaaaatactgtaAAACCTGTAAAAGATTAGCTCTTTTATTTGTCTTGCTCCTCCAATAGTCTTGCTCTATGCAAAAGCGTTTGAACAATAGTCTTCCACCCAACCATAGTCTGGCTTCTTTAATTCTATTAAAAAACACTATTTTTACtccacatttttgaaaatttg
i caeSp111.Scaffold514   I 3 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                733915  82 + 21540570 I

a score=-23574.000000
s ce10.chrX              1548003 1041 + 17718866  
s cb4.chrX                733997 1149 + 21540570  
i cb4.chrX               I 82 C 0
s caeRem4.Crem_Contig196  123326 1110 +   199417  
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    115573 1038 +   141934  
i caeSp111.Scaffold514   C 0 I 2
e caeJap4.Scaffold16506    51704 28405 +   115485 I

a score=281.000000
s ce10.chrX              1549044 4 + 17718866 tacc
s cb4.chrX                735146 4 + 21540570 AACA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  124436 4 +   199417 taca
i caeRem4.Crem_Contig196 C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeSp111.Scaffold514    116611 2 +   141934 I

a score=-7704.000000
s ce10.chrX              1549048 119 + 17718866 caaccggctccggcaaccagtccaactacccaaccggctccggcaacc-------agtccaactacccaaccggctccggcaaccagtcc---------------------------aactacccaaccgacTCCGGGAACCAGTCCAACTAC
s cb4.chrX                735150 116 + 21540570 CAACCTACACCAGCATCTGTT----GGCTCAAGCT---CACAAAAACCGGCGACGACTGCAACAACGACACCAGCAGCTTCATCTGGGCC---------------------------AATTAT---GACGACAACACAACCTACACCAGCATC
i cb4.chrX               C 0 I 12
s caeRem4.Crem_Contig196  124440 117 +   199417 gtaaccacgcCAAGTACAGT------GACCACGCCAAGTATAGTGACC-ACGCCAAGTACAGCGACCGTGTCATCAACAGCAACCACGCC---------------------------AACTAC--AGTTGACCACGCCAAGTACAGTGACCAT
i caeRem4.Crem_Contig196 C 0 I 15259
s caeSp111.Scaffold514    116613 121 +   141934 -------------CAACCGT------GACGGCACCACGTTCTCAGACT-------AGTTCAACAACGGTGACATCAACTTCAAGCTCGTCTCCTTGTGCGAGAACTTCCATCACTGAAAATAC---TTCGACCG---GATCTACACTAACTAG
i caeSp111.Scaffold514   I 2 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I

a score=-12306.000000
s ce10.chrX              1549167 983 + 17718866  
s cb4.chrX                735278 950 + 21540570  
i cb4.chrX               I 12 I 21
s caeSp111.Scaffold514    116734 947 +   141934  
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=482.000000
s ce10.chrX              1550150 21 + 17718866 GTTCTACTGTCACCGTTGTCT
s caeSp111.Scaffold514    117681 21 +   141934 gatcgactggatccactgtat
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                736228 21 + 21540570 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=-9853.000000
s ce10.chrX              1550171 327 + 17718866 ---CAGGATCTTCCAGCACATACGGATCGTCAACACCATCCGCGTCATCTAGTTCCGCTGGAACTGCGTCGACAATCTCAGGATCAACTGGTTCAACAGCTACAATTGTACCAGGATCTTCAAGCTCGGT---------TGGATCCTCAACACAGTCGGCTTCGCCCAGCTCACCTGGAACTATGTCCACAGTCTCTGGACCAACGGGTTCTACAGTCACAGTTG---TGCCAGGATCATCTACATCACCAGCTCCATCAAGCTCACCAAATCCATCTTC---C------TCACCTGCATCGACCGGCTCAACAATCACAATTAGTGGTTCTTCAAGCATAATTGTTTCCA------------------------
s cb4.chrX                736249 302 + 21540570 ---CAGCATCTGTTAGCTCAAGCT---------CACAAAAACCGGCTTCAAG-TTTGTC--ACCTTCGATGTCGACTGCGTCATCATCGGTTACTGC------------ACCACTATCTACAACCCCGGT---------------CT---TAAGTTCAACTATGTCGGCATCAACACAAAGTACAGCAAC---------TTCAATGAATCCTTCGTCATCATCCGGCAAGACAGTATCTTCTTCGGCTGCAAGT---TCAACTGCTCAACCCACAGCCACGACCACTCCATCAGCGCCGCTAACTGGTTCAAC-GTCGCAATCACCG--ATTTCAAGCTCAAC-GGTTACAACTCAG-----------AGTTCA-
i cb4.chrX               I 21 C 0
s caeSp111.Scaffold514    117702 306 +   141934 caactggatccactggCTCAACCG---------AATCAACCGTATCATCTGGATCTATCGGAACCACAATGACGGTGTTAACGTCAACTGTGACAGCAG--------GTAGTACTATC-AAAAGTTCGGTAGTTCCATTTACTTCTT---CTCACTCATCCACGTCCCATTCGTCTGAAATGACATCATC----------------GGccctttcttctcaattcacATCCCAGTAT-----------------------ACCTCACAAAACCCATCATCGATC------TCGACGATTTCAACagaatcaac-tgaaaagtcAACT--TATACAGGTTCGACAGGCAGTAGTTCTGTAAATACCGTTACTTCTG
i caeSp111.Scaffold514   C 0 I 91
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=22.000000
s ce10.chrX              1550498 106 + 17718866 CCGTCTCCGGTT-CCACCGTCTCCGGATCAACCGGAACATCCCAGTCCACACTTGCATCGTCAACTGCGACACCAGGTAGTAGCAGTACCGTTCCATCCTCATCAAG
s cb4.chrX                736551  73 + 21540570 CCGACTCCTGCTGCCACGGCCTC-----------GAGTAGCTCAGTGGTCACTAGT----TCAACTGTGTCTGGAGTCAGT------------------TCATCAA-
i cb4.chrX               C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeSp111.Scaffold514    118008  91 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=599.000000
s ce10.chrX              1550604 53 + 17718866 CCCCCAACC-ATCCAGTCAGTCCCCTGCACCTAATACG---------------GGATCCACAACCCCCT
s cb4.chrX                736624 60 + 21540570 -CCCCAACT-ATC-------TCCACAGTGTCTAGCCAAAGCAGCTCTCATTCTGGCTTCACAACTTCTT
i cb4.chrX               C 0 I 880
s caeSp111.Scaffold514    118099 47 +   141934 -CCCTAACTCATCC---CCATCCACTTCCCCTAACCAA------------------CCCACAATTTCCG
i caeSp111.Scaffold514   I 91 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=1605.000000
s ce10.chrX              1550657 147 + 17718866 CCCAGACCTCGTCCCAATCTCCTTCCCCCAGCATGAATC-----CCTCTTCATCGACACCCACAGGATCATCGCAGTCTACAATCACACCGGAAGGTTCGACAGCTAGCAGTCCGACTGGAAGCACTGGATCCACATTCTCAGTTGCAACAG
s caeSp111.Scaffold514    118146 138 +   141934 ACCAACTCTCGTCCCACTCCCCCATAACC--CCTGAATCAACAGTATCCTCTACGATACAAACAATATCAACGGAAGCT-TACTC-----------TTCTAGAGTAACTAGATCAACCGGAATTactggatcaactggatcaactggatcaa
i caeSp111.Scaffold514   C 0 I 65
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                736684 880 + 21540570 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=0.000000
s ce10.chrX              1550804 83 + 17718866 AGGTCACATCCCAATCAACCGTTCCTTCGGGCAGCTCTCTTGGAACACAATCGACCAACAGTTCCCCATCCCCCAGCTCTCTC
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                736684 880 + 21540570 I
e caeSp111.Scaffold514    118284 65 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=-441.000000
s ce10.chrX              1550887 83 + 17718866 TCCCCCTCTACATCTGGAATGAGTACTTTGACCTCGGAACC---ATCCCCAAGTTCC------ACACAGTCATCAGGAGCACAAAGTACATT
s caeSp111.Scaffold514    118349 86 +   141934 tcttcttctactccTG------GTACTCCCGTCACTGATAATGGATCTTCCAGTACCGTCAGTATACAGTCAACCTTATctggatccactgg
i caeSp111.Scaffold514   I 65 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                736684 880 + 21540570 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=360.000000
s ce10.chrX              1550970 120 + 17718866 ---------AACAACACCATCCCCCAACCCATCCCAATCAACCAGCTCACTGGAATCATCTACATCAGGCGCCACCACGTCATCTGGATCGGCAGGAACTACTATGACATCCCCCTCC--CAATCATCATC--
s cb4.chrX                737564 105 + 21540570 ---------AATGACCACAACTCCCCCTCCATCTCAATCAACTAGTTCATCTCAAGCCTCAACAT------CTACAGTA-------GATCAGC--AAACAACAGTGaccaccccaacc--ccaaccccgtc--
i cb4.chrX               I 880 I 305
s caeSp111.Scaffold514    118435 126 +   141934 aaccactgaatcgactgaatcgactggatcaactggatcaactggatcaactggatccaccggat------ccaccgtatcgactggatttactggaaccactg-gatcaactggatccaccggatccaccgt
i caeSp111.Scaffold514   C 0 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=981.000000
s ce10.chrX              1551090 102 + 17718866 AGTTGGAAGCTCGCAAGGATCCACTAGTCCAGCTGCATCAACGACATCAGGAGAAATGACATCTCAAGGTTCCACACAAACACCTGGATCTTCAGTATCAAC
s caeSp111.Scaffold514    118561  87 +   141934 a---------tcgactggatttactggaaccactggatcaactggatcgactgaatcgac------tggatccactgaaccgactggaactactggatccac
i caeSp111.Scaffold514   C 0 I 3137
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                737669 305 + 21540570 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=0.000000
s ce10.chrX              1551192 1277 + 17718866  
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e cb4.chrX                737669  305 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=1778.000000
s ce10.chrX              1552469 86 + 17718866 CTTCATTGTCAACTTCTCCTGCTATTTCTACATCAACGCAACAATCAGTGTCCACCAATAGCCCTGGGTCCACAGTGACTCAACCG
s cb4.chrX                737974 65 + 21540570 CTTCATCATCCAATTctccttatttttcttcatcaaC---------------------TAACTCTGGATCAAGTTCAACTCAAACA
i cb4.chrX               I 305 C 0
e caeJap4.Scaffold16506    51704 28405 +   115485 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=-4011.000000
s ce10.chrX              1552555 193 + 17718866 TCTACGGT-----TCGTGGCTCCACAAGCTCTGGAAGCAC----------------AGTTACCACTGGATCTACAGAAGGAAGCAGTA---------CATCAGGTAGTTCATCTGCTACTTCTTTAAGTAGCAGTTCCCCC---GTCCCATCAACTTCCCAATCCCCT---------AACCCTTCCAC-GTCCGGTAG-----TAGTACTCCAACCC--CCAACC-CATCCCAATCCACTAGTC
s cb4.chrX                738039 244 + 21540570 TCAACAAAAGAAACCTCGACACCATCATCTTTAACAACATTCTCCACAACTTCATTGGTTTCTTCTCAATCCACATCCAGTGGCAGTGTTTCTAGTTCACCAGGTAGATCAAGCACTGATCTCCCAATCAGTACTTCCCCTTCTGCTTCATCTCCTGCACAGACCCCGGTTCGGTCAAGCTCTACTTCAGTCCCATCGCAGTCTAGTACCCCAACTCAACTAACTACATCGGTAGCTTCTGTTT
i cb4.chrX               C 0 C 0
s caeJap4.Scaffold16506    80109 179 +   115485 TCTACAAT--------TGGATTCACAAGCGAGGGAACGAC----------------AGTAACTTCTGTATCCACGGAAAGTTCGAGTACTTCAAACCCGTCAACTGGATCATCTAATTCTTACTCTGGTAGTACTACATTA---GGGTCGACACCCACTGACGCTTCT---------A---CTATTTCTATCCTGCAA---TCCAGCTCTTTGCCTC---------CGTC--------------
i caeJap4.Scaffold16506  I 28405 I 32
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=1.000000
s ce10.chrX              1552748 39 + 17718866 CAGTTGTTTCAACAACAACTGGAGAAATGACATCTCATG
s cb4.chrX                738283 37 + 21540570 CAGAAACCTCCACACTATCTAGTATTTTAACATC--ATC
i cb4.chrX               C 0 C 0
e caeJap4.Scaffold16506    80288 32 +   115485 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=1804.000000
s ce10.chrX              1552787 53 + 17718866 GTTCAACTCA--------------GACACCAAGTACTATTGGATCAACAGTGACTCAACCGTCTACT
s cb4.chrX                738320 67 + 21540570 CCTCGCCTCATCTACCACTTCCGGGACCCCCAGTTCTATTGGATCCACAGTAACCAAATCTTCTTCT
i cb4.chrX               C 0 I 3926
s caeJap4.Scaffold16506    80320 50 +   115485 GTTCA---CA--------------GTCGACAAGGCCTACCGATACAACATCTCCACAATATTCTTCT
i caeJap4.Scaffold16506  I 32 C 0
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=1122.000000
s ce10.chrX              1552840 71 + 17718866 GTCAGTGGATCGAACAGTTCTGGAAGCACAGTTACCATTGGATCTTCGGAAGCAAGCACCTCAGGTAGTTC
s caeJap4.Scaffold16506    80370 65 +   115485 ACAATTGGATTAACAAGTGAGGGAACGACGGTAACTTCTGTATCCACGGAA------AGTTCGGGTACTTC
i caeJap4.Scaffold16506  C 0 I 1980
e cb4.chrX                738387 3926 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=0.000000
s ce10.chrX              1552911 5498 + 17718866  
e caeJap4.Scaffold16506    80435 1980 +   115485 I
e cb4.chrX                738387 3926 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=3257.000000
s ce10.chrX              1558409 89 + 17718866 AAGCTTTGAATCTTTAAAACAATAACTAGTATGTTTTCAGGTTCATCACTCGCCACAACTTCCGCGCCAAGTGAGTTTCTTTGAATTTT
s caePb3.Scfld02_133         383 89 -   344637 aaactgaagattctcaaaataatatattttaatttttcaggtaCTTCCGTCGCAACAACTTCTAAGCCAAGTGAGTTTGGATAATTTTT
i caePb3.Scfld02_133     N 0 I 67
e caeJap4.Scaffold16506    80435 1980 +   115485 I
e cb4.chrX                738387 3926 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=0.000000
s ce10.chrX              1558498 172 + 17718866 ATTCTGAGCTTCGAAAAACAGTTAAATTTAAATTTGATACATTTTCAAAGCTGATTTCTGAATGTGAAGTATTAACAATATTTAAGGGAATTGCATTAGAAAGTCACAATTAATATATTGAAATGGATTGTGCTTTTGCTTTAACAAAATTTGTATTCTTAAATTTTTGGTC
e caePb3.Scfld02_133         472  67 -   344637 I
e caeJap4.Scaffold16506    80435 1980 +   115485 I
e cb4.chrX                738387 3926 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  124557 15259 +   199417 I

a score=379.000000
s ce10.chrX              1558670 9 + 17718866 CAGTAAATT
s caeRem4.Crem_Contig196  139816 9 +   199417 CAACAACTT
i caeRem4.Crem_Contig196 I 15259 C 0
e caePb3.Scfld02_133         472 67 -   344637 I
e caeJap4.Scaffold16506    80435 1980 +   115485 I
e cb4.chrX                738387 3926 + 21540570 I
e caeSp111.Scaffold514    118648 3137 +   141934 I

a score=205.000000
s ce10.chrX              1558679 8 + 17718866 TGAAGCAT
s cb4.chrX                742313 8 + 21540570 TGCAACAA
i cb4.chrX               I 3926 C 0
e caePb3.Scfld02_133         472 67 -   344637 I
e caeJap4.Scaffold16506    80435 1980 +   115485 I
e caeSp111.Scaffold514    118648 3137 +   141934 I
e caeRem4.Crem_Contig196  139825 0 +   199417 C

a score=-1513.000000
s ce10.chrX              1558687 43 + 17718866 CTTAAACtttaaataaatat---tattttaaataaatattttCTGA
s cb4.chrX                742321 31 + 21540570 CTTCGAAACCAAGTGAGAGT---TTTTATAAAT------------A
i cb4.chrX               C 0 I 8
s caeRem4.Crem_Contig196  139825 31 +   199417 ---CAAAGCCTAGTGAG------TTTTGAAACTAG------TGTAA
i caeRem4.Crem_Contig196 C 0 I 8
s caeJap4.Scaffold16506    82415 38 +   115485 CTTCAGCATcaagtaaaaattaattttagaaag--------tttta
i caeJap4.Scaffold16506  I 1980 C 0
e caePb3.Scfld02_133         472 67 -   344637 I
e caeSp111.Scaffold514    118648 3137 +   141934 I

a score=-3401.000000
s ce10.chrX              1558730 15 + 17718866 AAACTTATTT--TCATA----
s cb4.chrX                742360 10 + 21540570 ACAATGTTTT-----------
i cb4.chrX               I 8 C 0
s caeRem4.Crem_Contig196  139864 10 +   199417 aaattgaata-----------
i caeRem4.Crem_Contig196 I 8 C 0
s caePb3.Scfld02_133         539 12 -   344637 aaatttattttg---------
i caePb3.Scfld02_133     I 67 C 0
s caeJap4.Scaffold16506    82453 14 +   115485 aaaataattt-------ttgt
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    118648 3137 +   141934 I

a score=40909.000000
s ce10.chrX              1558745  92 + 17718866 TTTTCAGAACCCAGTGTGACTTGTCTGTTCATGTACGATACACAATCCAAAGAAATAGATCAAACAGCTATAAACACGTATAAAACTGTA---------AG
s cb4.chrX                742370  92 + 21540570 CTTTCAGAGCCTAGTGTTACTTGTTTGTTTATGGTTGATTTGCAGTCGTTAAATATCAGCACAGaggcaataaaaaattatactACGGTG---------AG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  139874  92 +   199417 tttccagTTCCCAGTGTGACATGCTTGTTTATGGTTGATTACCAATCTTCAGGAATAGATCAAGCTGCCATCACTACCTATCGATCAGTA---------AG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    121785 101 +   141934 TTTTTAGAGCCGAATGTGACTTGTTTGTTTATGGTTGATATGCAGTCTTCTGGAATTGATCAAAATGCGATTGCAACTTATCAAACGGTATATTTCCAAAG
i caeSp111.Scaffold514   I 3137 C 0
s caePb3.Scfld02_133         551 100 -   344637 gtTGCAGAGCCCAGTGTGACCTGTTTGTTCATGGTTGATCTGCAGTCGTCGGGAATAGATCAAGCAGCAATTGTTACTTATAACAAGGTA-ACTGATGAAG
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    82467  90 +   115485 --ttcagtacTTAAAGTCACATGCTTGTTCATGTTCGATTGCCAATCGGCGGGTCTTCCAGAGATAGCTATACAAACATATCAAGGTGTA---------AG
i caeJap4.Scaffold16506  C 0 I 3533

a score=512.000000
s ce10.chrX              1558837 2 + 17718866 AA
s cb4.chrX                742462 2 + 21540570 CA
i cb4.chrX               C 0 I 29
s caeRem4.Crem_Contig196  139966 2 +   199417 AG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    121886 2 +   141934 AA
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         651 2 -   344637 AA
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    82557 3533 +   115485 I

a score=-3692.000000
s ce10.chrX              1558839 21 + 17718866 TGTTTTGATAGT-------------CAAGTTTGT
s caeRem4.Crem_Contig196  139968 28 +   199417 TG-TTTGAAAGTCGTAAATAT-----ATAATCAT
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    121888 25 +   141934 ---------AGTGCCAAACGCCaatcaaatttat
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         653 21 -   344637 ---------GAT----AATGCTtaggaaaattgt
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    82557 3533 +   115485 I
e cb4.chrX                742464 29 + 21540570 I

a score=-4532.000000
s ce10.chrX              1558860 8 + 17718866 -ATTGAACA-----
s caeRem4.Crem_Contig196  139996 2 +   199417 -TA-----------
i caeRem4.Crem_Contig196 C 0 I 1
s caeSp111.Scaffold514    121913 2 +   141934 -tt-----------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         674 2 -   344637 -tt-----------
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86090 8 +   115485 att------gaata
i caeJap4.Scaffold16506  I 3533 C 0
e cb4.chrX                742464 29 + 21540570 I

a score=43186.000000
s ce10.chrX              1558868 239 + 17718866 --TTTTTAGTATTTCAATTTCGCTCTACTGGTTGCTTCCAAATTGAACAATGAATCAATTTTGACTGGATACATCGATAACTTCGGATACAGTGCTGGGTTGAATGATCATCAATATTACCCTACTGACGACTACAATGGTATTAAGTCTGTACCTTTCCCAATTGATGGCACTGATGACGACATTGATCTTGATTTGAAAGAGTAAG-------GTTTCACAATTCGCAGAAAATT----TAAAATAAAAT----
s cb4.chrX                742493 227 + 21540570 --TTTTCAGTATTGGAACTTTGCAATGACAGTCGCATCAAAATTAAATGACGCATCCACGTTCACTGGTTATCCTGATTCATTTGGTTACGCGAGTGGACTAAACGATCATAGTAAATATCCAGTTAACAATTATACGGATTTCAAAAACGTTCCCATGCCAGTGGAGGATCTAGACGACGGAATTGATTTGGACCTCAAAGAGTGAG-----------T----TTCgcaaaa--------agaaacagaat----
i cb4.chrX               I 29 I 166
s caeRem4.Crem_Contig196  139999 227 +   199417 --TTTGCAGTACTACAACTTCGCTCTTCTAACCGCATCAAAATTAAACGACGCTTCTGATTTCACGGGTGATTTGGACAACTTTGGTTACACCGGCGCCTTACCCGATCATGTCTCATATACTCCTCGAAATTATGACGACTTCAAGAATGTTCCATTCCCAATTGATAGTACTGATGATGGCATTGATCTAGATTTGAAAGAGTGAG-----------T-------GCAAAA-----CACGAAAACAtcat----
i caeRem4.Crem_Contig196 I 1 I 11
s caeSp111.Scaffold514    121915 240 +   141934 ------cagtaTTTCAATTTTGCCAAACTCATAGGAACTACTTTGAACGATCAATCTTATTTCACCGGTTTTATCGATAACTTTGGTTATTCTGGTCAACTCTCCAATCGTAAAAATTACACTGTCTTAAATTTCATCAACTTTGAAACCATTGGTTTTCCAATAGACGGAACAGACGATGATATTGATTTAAATCTTGATGAGTGAGCAGTAGCGTTGTAC-TTTGTCAATTACGTGCA-----ATATTGT----
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         676 246 -   344637 ---ttgcagTATTACTCTTTTGCCCTGAATGTAGCTGGAAAGTTGAATAACCAGGCTGTCTTAACTGGTTATATTGATACCTTTGGATACTCTAGTGGTTTAAACGATCACGAAGATTATCCAACTGACAGTTACGCTGACTTCAGTAATATTGCAATCCCGATCGATGGTACTGATGATGATATTGATCTTGACTTAAAAGAGTAAG-ACTTTCGTc-cgc-attttcaaaaaatttcagaaagatagTTT----
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86098 239 +   115485 tttttccAGTACTTCAGTTTCGCTcaaaatattggaaacaaGCTTGCAAATCGTACAGTGTTTACTGGAGATTTCGATCACTTTGGATA---TGGTGGATCAGGAGAGCATACACATTATTCTCCACTAGATCTTGATTTGTTCAATTCATTGTCATTAGATGTTAGTGTTAAAGACACCGACATTGATCTCGATTTAAAAGAGTAAA-CGACGCGTA-TATAACTTCCAAAA------------TTATCTTACTT
i caeJap4.Scaffold16506  C 0 C 0

a score=1440.000000
s ce10.chrX              1559107 103 + 17718866 TTCAGTGTCGACAAAAGTTTGGCAACAGCAGATTGGACACCACCAGTGGCTGACCAAACCTGCATGATTTTCATTTCTGCTGCGTAAGC-TCATTTATTGGAAA
s caeRem4.Crem_Contig196  140237 103 +   199417 ttcagggTGAATTCAAATCTCACTATAGCTGGTTGGAACAACGCAACCAATAAGCAAACATGCCTACTTTTCTTCTCAGCcgcgtaagt-tttttttttgaaaa
i caeRem4.Crem_Contig196 I 11 I 31
s caeSp111.Scaffold514    122155  99 +   141934 TCCAGAGTTGATGATACTTTGAAAATGGCAAAATGGAACCCAGAAGCTGATGATAACACTTGCATGATTTTCATATCAGCAGCGTGAG-----TTTCTAGAACA
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         922  77 -   344637 CACAAAAGTGTTGAGTCTTAACAATCATTTTTGTCGAa---agtaattaaaaaaa---------------tcataccagt----taaa-----attaatgaaaa
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86337 103 +   115485 TTCAGTGTCAATGCTAGCTTAACCGCGGCTTCTTGGGTACCTCCAGTGGAAGATCAAACATGCTTGGTTTTTATATCAGCAGCGTAAATATTTGTGTTtgaat-
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                742720 166 + 21540570 I

a score=-9363.000000
s ce10.chrX              1559210 51 + 17718866 CA--TCATTTTGAAAAATTTTAGAAAAGCAACTAGAAATTTCGAAAAATTGTA
s caeSp111.Scaffold514    122254 23 +   141934 ACATTTGATTAG---AATGTGATGCA---------------------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133         999 39 -   344637 cgGTTCGTTTTG--TAACTTCAAGCAGG------------TTGCCAAGTTATT
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86440  7 +   115485 --------------tattctc--------------------------------
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                742720 166 + 21540570 I
e caeRem4.Crem_Contig196  140340 31 +   199417 I

a score=-17938.000000
s ce10.chrX              1559261 60 + 17718866 AAAAAATTCGGAAAATTTAAATTT---------------------TGGAAAAATCTCTGTTTACTGA---AAATCGCAACGGTT--------
s caeRem4.Crem_Contig196  140371 26 +   199417 ------------------------------------------------aaaaaatactaTAAATT-----AACctgaaa-------------
i caeRem4.Crem_Contig196 I 31 C 0
s caeSp111.Scaffold514    122277 39 +   141934 ----------------TTAGGTGCATTGTCA--------------TGAAACAAGTGCACTTTAAT-------------ATTG----------
i caeSp111.Scaffold514   C 0 I 3
s caePb3.Scfld02_133        1038 81 -   344637 CTGCGATTCTCTAAAtctaagtttttttccaatataatTTTCCTGTGTAAGAAGTGgtatttgatga---aattttaaaTTGTC--------
i caePb3.Scfld02_133     C 0 I 38
s caeJap4.Scaffold16506    86447 47 +   115485 ---------------------------------------------agtacggagcgctgcaaatttgctccattcgcagtggCCGCATTGGT
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                742720 166 + 21540570 I

a score=-23079.000000
s ce10.chrX              1559321 55 + 17718866 CACAAATAGTT---------TTGCTCATGTTCtaaattttta-----------aattttttattCATGTACACAA
s cb4.chrX                742886 41 + 21540570 -------------------cgtaagttttttttgcttt---------------aatgttttcatgttttcaagAA
i cb4.chrX               I 166 I 9
s caeRem4.Crem_Contig196  140397 55 +   199417 --------------------acaaacattttctaaatttctaaaGATGAAAGGAccgttttcttatttttaaaaa
i caeRem4.Crem_Contig196 C 0 I 51
s caeSp111.Scaffold514    122319 36 +   141934 CACCTGTAGTT-------GTACATTCATGA-----------------------TACGTTTTGTTTC---------
i caeSp111.Scaffold514   I 3 C 0
s caePb3.Scfld02_133        1157 60 -   344637 CACCACCAGTTAAGGATCAGACATGCATGATTTTCTTCTCTGCGGcg------taagttgtttttt---------
i caePb3.Scfld02_133     I 38 C 0
s caeJap4.Scaffold16506    86494 37 +   115485 -----------------Atcgagagcgtggccgatgttttgc-----------tctgatttctct----------
i caeJap4.Scaffold16506  C 0 C 0

a score=-30516.000000
s ce10.chrX              1559376 85 + 17718866 CTACAAAATTTACAGTCCTA-ATGTACAAT--------GTTAACATGACGACAATGTTAAC-----ATTGTACAATTT--------------TAATATTAGGGCTGATGGTAT
s cb4.chrX                742936 57 + 21540570 --ATTGAA-TAG---------TCCAACTGC--------TGCAatat---gcttcttt---------ttttcgagatta----------------aaaaactggtt--------
i cb4.chrX               I 9 C 0
s caeSp111.Scaffold514    122355 40 +   141934 ---TTGCAATGG---------TTCAAC----------------------GCtagttt---------ttt----agttt--------------------aatgattca------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        1217 81 -   344637 ---tggaatttgaaatttta-ttgaact------------tGGTCTG--GCCAGTTTTGAAAGACCtttgcaaagttt--------------tttcaaaatagttgaTTGCAt
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86531 88 +   115485 ------------aaatctcactccTAATGCCTGCGCAATGCAATGTGCGATTAGAGTGga------tttgcagagctttataccgagtatattaaaaAAGTAACAT-------
i caeJap4.Scaffold16506  C 0 C 0
e caeRem4.Crem_Contig196  140452 51 +   199417 I

a score=46328.000000
s ce10.chrX              1559461 228 + 17718866 ---TTTATTGCAGACCAGAAGATGAGTATGGGGGCACTACTATAAAATCGACTTATACTTACTTCGAGACAGTCGTTGGAGTTCTTGTTGGAGGTAAGAGTTCATTCCAAGTTACCAGTTT--TAACAACTTGTAAAGTTTT-----CAGGAGCTAAAAGTATACCGGGACTTTCAATTGACAAAAATATAGTTATCACGAACAATACAATGAACGACCGTGACGCTAGTGCAGTTGT
s cb4.chrX                742993 209 + 21540570 -------tttcaGACCCGAAGCGGAATTCGGAAGTACTACTATCAACTCCACATATGTCAATTTCACAACTGTTATTGGCGTTCGTATTGGAGGTA----TATTCTAGTAAGAGTAAAATC-ACAATTAACTTCAAATTATT-----CAGATGCCACCTCAATACCGGGAAT---CACTGATC---------CCGTCAACGCTCAGAATTTGGATGATGCAGAAGCTCAATCAGTAGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  140503 213 +   199417 ---TTCATTTCAGCCCAGAAGCAGAATATGGTGGGACCACAATCCAGACAACGTACAATAGTTTCACTACAGTCATTGGAGTGCGTATAGGAGGTT----tgtttccgaaaatttcaaatt-ttgattacaACCTATAAATT-----TAGGAGCTACATCCATCCCAGGTTT---AACGGACT---------CCATCGATGCCTCCTCAATGACCGATGGTGATGCACAAGCGATTGT
i caeRem4.Crem_Contig196 I 51 C 0
s caeSp111.Scaffold514    122395 210 +   141934 ------ttttcaggcCTGAAGCAATGTACAACAATACTTCAATTGGACTATCATATGCTAGTTTTAAAACAGTCCTTGGAGTTTTAGTTGGAGGT-----TGTTTTGATAAtcattgttttaaaaaacccaATCAAGTTATT-----CAGGTGCGACTTCTATCCCTGGGTT---AACAGATC---------CTCTCACTGCTACCACACTATCAACTGCTGATGCAGAATCTGTTGT
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        1298 212 -   344637 -----ttttttAGACCCGAAGCAATGTACGGAGGTAACTCAATTGAAACCACATACGACAGCTTCACGACGGTTATCGGAGTTCTTGTTGGAGGTA----TTTTTTCATGCTTATTAGTTT-----TCTCAACCAAGTTTTCCTTTGCAGCTGAAACTTCCATCCCGGGATT---AACAGATC---------CAATTGCTGCTTCAACACTGACAGATGCTGATGCTGAAGCTGTTgt
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    86619 213 +   115485 TTTATCTTTTCAGCGATAAAGAGGAATACGGTAGCACGACCATTCAAACCACTTATCCGCAATTCACAACAGTTGTCGGAGTCCGTGTGGGAGGTAg---tttatttg----tttcaaaat-gaagaaaaacataaaatttt-----aAGATGCAACGTCCATTCCTGGCTT---AACAAATG---------TTGTAGTAGCACCTACACTTAACGATTATGATGCTGAATCCGTTGT
i caeJap4.Scaffold16506  C 0 I 5828

a score=-16330.000000
s ce10.chrX              1559689 220 + 17718866 CAGCAAACTTCTAGAACTTCTTCC-AACGGCGTAAA--TTA------CATCATCCGAATATTATGCCTA------ATCAAACACCCAACGGTTTTTC-------TTCCTTGTATC---AAT-TTCCAGCTTTCTGAA---------ATTTTCAATT------TTATCAATTTTTT-----AAAAGTCACCAAAT---C---AAATCTCATC----CC----------GTC--------CCACCTTCATGCCCATTGATCTTTTCTTTTTTATCCC-ATTCAAAAACTTTCTCTAT--------------
s cb4.chrX                743202 228 + 21540570 TCAGAAACTTTTGGACAGTTTACC-TTGAACGTGTT--TTT--------TCTTCACACTTCTACTCCTA----TTCTTGAACACCCGACTGTTTTtc-atgataatttttttccctaaagt--------------------------------------ccaaaattattttttttc---agaagtaaGTGAAGAGCT---gatttttgttgttatttttca-----ttt------aacCATCTCAAAACATATTCCTCAGATCttttttgtctc-acttga---------ttttcacacgttttcttt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  140716 269 +   199417 AACAAAACTTCTGGAAAGCCTCCC-TCCAACATGAT--TCTAGTTGTCATCTACTTTCTTCAATATCTAAAGTACTCCAAACACCCAAcggtttttctctatttatgtttttctc---ggttctccattt----------------catttcactc-ccccacccttatttttttcctattaaaGTAGGCGGAG-TCT---GGATCCTGTT----TCCTTCACAAATCTC------AACCATTTCCCTTC--ATTCTTCTGATCTTTTTCGTCTC-ATCTAGCcgcaatttttttccaaccatttgatt
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    122605 223 +   141934 ACAAAAGCTTTTAGAAATTCTACCGTAAAATTTGATGCATT---------------ATtgtaatttctg-aattttccaaaCACCCAACGGTTTTTC--------GACTCTCTTC---AATACGATAATTTTC-------------TATTGCAATT-TCCTTCTCCAATTTTGTTCGAGTGAAACAAAACAGATCTTC-----AGCCTAGC----TCTCTCAGCAACCTCGAGAAAAACCAct-------------ctaaaaatgttttctcttctatttttaggC-----------------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        1510 254 -   344637 tcagaaacttctggaaagtCTACC-CCCTGTttaat--att---------------tttgtaatt--tg-aatATTCCAAACACCCAACggtttttc--------tccttctccc---tGTATTTcggttttccaaaattattccACATTCCAATTCTTCCTCCCTCCTTTTTTCGGTAtcaaagtgggcggagttttcTTGGATCCTGTT----TCCTTCTCAAATCTC-------ACCATTTCCCTTC--ATTCCtctgatcttttttgtttctatctagccgcaattatttt------tttt----
i caePb3.Scfld02_133     C 0 I 32
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=-1584.000000
s ce10.chrX              1559909 20 + 17718866 GTCCTGAATTCCCACCTAAA
s cb4.chrX                743430 10 + 21540570 ------ttttaatat----a
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  140985 14 +   199417 ------tttttgtattgaaa
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    122828 20 +   141934 TACCAGTGATTATATCTATA
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        1764 32 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=11438.000000
s ce10.chrX              1559929 41 + 17718866 TCCTTCCAAA--------CAACTATCCAGAGCTTTAACTCTCTCTCCTT
s cb4.chrX                743440 48 + 21540570 -ttCTAATGCAAAACCAACAACTATCAAGAGCTTTAAGCCTTTTTGTTT
i cb4.chrX               C 0 T 10020
s caeRem4.Crem_Contig196  140999 46 +   199417 -ttttgttgt--tgtcAACAACAATCAAGAGCTTTAACTCTATCCGTTT
i caeRem4.Crem_Contig196 C 0 I 3
s caeSp111.Scaffold514    122848 41 +   141934 AATTTTATGC--------CAACTATTAAAAGCTTTAACTTATTATTGtt
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        1796 41 -   344637 TCTCTTTAAA--------CAACTACCAAGAGCTTTAACTCTATCCTCTT
i caePb3.Scfld02_133     I 32 C 0
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=-8660.000000
s ce10.chrX              1559970 75 + 17718866 -------------------TTT-TCTTCCTATTTTTTTCTGTCAT----TCGGTTTCTGTGTCCTTGTT-----GCTCAATAATTGTATTTTCTAATACTAAAA
s caeRem4.Crem_Contig196  141048 68 +   199417 -------------------ATt-tctttaaaatgttttttcccGA---------------ATACTTGCTATGTGCCTTGCTCACCAATTTTCCTGAAGTTGAA-
i caeRem4.Crem_Contig196 I 3 C 0
s caeSp111.Scaffold514    122889 90 +   141934 aatgaaaatcaaaaggcttgtcatctttttattt-tatatctgca-----------gttcattctt-ttttttgacccAATTATTCAGTTTCTTAcaataaaa-
i caeSp111.Scaffold514   C 0 T 8236
s caePb3.Scfld02_133        1837 92 -   344637 CATG---ATTAAAAAAGTCATT-TCTCCTGATTTCTATATATGAAAACTTGTGGTTGTGTGCCCTTGCTTCCTTActtcattttccgttttttcac--------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T

a score=2145.000000
s ce10.chrX              1560045 81 + 17718866 TAAAATTGCATTTTCATGTCCCCCTAA---------------TCCTTTTCCATGTTAGAAAGAAGATGAAGCATTAGAACTTCTACGAATAAAGTT
s caeRem4.Crem_Contig196  141116 60 +   199417 TTGAATTGCAATAAAACA-------AA---------------TTCTTTGTCA------AAAGAAGA-------TAAGAAC-TACCCGAATAAAGTT
i caeRem4.Crem_Contig196 C 0 T 18679
s caePb3.Scfld02_133        1929 81 -   344637 ttattttgcattaataaa-------aataatttgtccTGAATTCTTTTGTCA------AAAGAAGATG--TTCTAAGAACTTGTATTAATAAAGTT
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeSp111.Scaffold514    122979 8236 +   141934 T

a score=351.000000
s ce10.chrX              1560126 5 + 17718866 CGATT
s caePb3.Scfld02_133        2010 5 -   344637 Cgact
i caePb3.Scfld02_133     C 0 I 1419
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeSp111.Scaffold514    122979 8236 +   141934 T
e caeRem4.Crem_Contig196  141176 18679 +   199417 T

a score=0.000000
s ce10.chrX              1560131 8116 + 17718866  
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeSp111.Scaffold514    122979 8236 +   141934 T
e caeRem4.Crem_Contig196  141176 18679 +   199417 T

a score=3131.000000
s ce10.chrX              1568247 100 + 17718866 CCCAGTTTCTAATGGCTGTTTTACTATCAACCCTGCTATTATCACTGAGAACATCTTTATGGGTTGCCGGTGCACAGGGTTTCCAGTTGTTGCCGCCTCC
s caeRem4.Crem_Contig196  122497  85 +   199417 CCCATTTTCTAATGGCTGTTTTACAATCATCT------TGATCGTTAAGACCAACTTCAT-GCTTGcccgt--------ttttcagtttttgtctcCCTC
i caeRem4.Crem_Contig196 T 18679 I 162
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeSp111.Scaffold514    122979 8236 +   141934 T

a score=0.000000
s ce10.chrX              1568347 225 + 17718866 AGCACATTGTTCTCATTCCAGAGGGTGGTGGCTCAGTTCAGTCACGGTTTTTTAAGGGGCACAGATGCCTTGTTTTTATGTGTTAGGCAGTTGGCTACCGTATAAAAAGGTCGCACGGCAGTTTCCATTAGTGTCTTTTTTTCAATTTTGTTATAGTTTGGTTTGCACTGACCAAAATATTTGCACTGACCAAAATAATAGCACTGACCAATTTTTTTTGATTTT
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeSp111.Scaffold514    122979 8236 +   141934 T
e caeRem4.Crem_Contig196  122582 162 +   199417 I

a score=434.000000
s ce10.chrX              1568572 18 + 17718866 CTTCTTTTTTCGTTAAAC
s caeSp111.Scaffold514    114743 18 +   141934 ctttttttttcaaattat
i caeSp111.Scaffold514   T 8236 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T
e caeRem4.Crem_Contig196  122582 162 +   199417 I

a score=-721.000000
s ce10.chrX              1568590 74 + 17718866 TTTTTTCTAAACTCTTCAATTCCTCTTGTTTTTCTTGTACG--TGTTTTGCatttataataataaaaaaaaaGTAA---
s caeRem4.Crem_Contig196  122744 65 +   199417 -TTTCTTTTAACTTcttatattctttttctcaaaacagtCACCAATTTCAACTTCATAATA-------------AATTA
i caeRem4.Crem_Contig196 I 162 C 0
s caeSp111.Scaffold514    114761 63 +   141934 ttttttgttagctCAACAGCTTTTTGctttaaaattgttta--aatTACAAAGTTATAACA-------------AACT-
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743488 10020 + 21540570 T

a score=36483.000000
s ce10.chrX              1568664 115 + 17718866 TTTCAGACATGAAGCTGAAATTCAAAATGCCACGTGGCATTTACCTTGTATTCATTTTGGCGGTGTCAGCCGCTTTGGTGGCCGGCCTGATTTTGACTATTGTGCTGGTTAGCAG
s cb4.chrX                733468 103 + 21540570 TTCCAGATATG------------AGGGTGCCACGTGGCATAGGTCTCGTGTTTATAGTAGTGGTGGCCGTTGCGCTAGTGGCTGGCCTTATATTGACAATTGTCCTCGTTAGTCG
i cb4.chrX               T 10020 C 0
s caeRem4.Crem_Contig196  122809 103 +   199417 TTCCAGACATG------------AGAGTGCCACGTGGCATTGGTCTTGTGTTCATGGTAGCGGTGGCCGCCGCATTGGTGGCCGGCCTTATCCTGACCATTGTCCTTGTCAGTCG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    114824 103 +   141934 TTGCAGACATG------------CGagtgccacgtggcattggTCTTGTGTTTATCATAGCGGTGGCAGCTGCGTTAGTGGCCGGACTCATCTTGACCATTGTCCTCGTCAGTCG
i caeSp111.Scaffold514   C 0 I 17
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=29.000000
s ce10.chrX              1568779 1 + 17718866 G
s cb4.chrX                733571 1 + 21540570 A
i cb4.chrX               C 0 I 54
s caeRem4.Crem_Contig196  122912 1 +   199417 A
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeSp111.Scaffold514    114927 17 +   141934 I

a score=387.000000
s ce10.chrX              1568780 16 + 17718866 CCTAATAAAGCTGCAC
s caeRem4.Crem_Contig196  122913 16 +   199417 CCCAGTGCAGCTCCGA
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                733572 54 + 21540570 I
e caeSp111.Scaffold514    114927 17 +   141934 I

a score=1419.000000
s ce10.chrX              1568796 5 + 17718866 GTAAG
s caeRem4.Crem_Contig196  122929 5 +   199417 GTAAG
i caeRem4.Crem_Contig196 C 0 I 43
s caeSp111.Scaffold514    114944 5 +   141934 gtaaG
i caeSp111.Scaffold514   I 17 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                733572 54 + 21540570 I

a score=-203.000000
s ce10.chrX              1568801 23 + 17718866 CCT-------------AAATGGAAAAAAAAGCCGTC
s caeSp111.Scaffold514    114949 36 +   141934 CGTTTTCAACTTTTAAACATGAACAAATAATTTATC
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                733572 54 + 21540570 I
e caeRem4.Crem_Contig196  122934 43 +   199417 I

a score=-3306.000000
s ce10.chrX              1568824 17 + 17718866 ---------------------------ATTTC--------GAATTTATTCAA------------------
s cb4.chrX                733626 17 + 21540570 ---------------------------acttt--------aaaaatatttaa------------------
i cb4.chrX               I 54 I 10
s caeSp111.Scaffold514    114985 70 +   141934 ATGAGAGCACAGTTTCTGCTAAAAATTACTTTGTTCCGAGAATAACATTTTGCTTTGTGAATCTGATGAG
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeRem4.Crem_Contig196  122934 43 +   199417 I

a score=10431.000000
s ce10.chrX              1568841 177 + 17718866 --TTTTCAGCATT---TGATGGTCGTGTCATTACAGTGAGCCTGTGCAATTCGAATTCAGAGCCGCAGATTTCAAGCTTGAGGTTTAAGAGAGATGCTAA-T-----ACAGATTGTAGTTTTAATGCAGTGAGTTT-GAATTGCATTGCT--AAAAAATTT-------------------------------------------TAACATTCACCAAAAACTTGACACTCAT--CC
s cb4.chrX                733653 165 + 21540570 --atttcAGCACC---TGAGGGTCGTGTCATTACTTTGGGTCTCTGCAATTCAAACTTGGAGGAGCCAATGACTAGTTTCCGTTTTAAAAGGGATGTTGACTCATCATCTTCTTGTAATTTCACTTCGGTTAGTataatactgaaatttttgataacgtAT--------------------------------------------------------------GACTTTCCT----
i cb4.chrX               I 10 C 0
s caeRem4.Crem_Contig196  122977 159 +   199417 --ttttcagcctCAGACGATGGTCGTGTCATAAACGTGGGCCTTTGCAATTCAAATTTAGAAGAGCCTCAGCAAAGTTTTCGGTTTAAACGAGATGTTGA-TTAT--TCTGCTTGCAACTTCACCTCGGTAAATGT-TTTCTGCActttt--atgtcattt-----------------------------------------------------------------tttccc----
i caeRem4.Crem_Contig196 I 43 C 0
s caeSp111.Scaffold514    115055 223 +   141934 CTGTTGCAGAATT---TTCTGGTCGTGTCATAACTTTGGGACTGTGCACTTCAAAATTGGAAGCTGTTGACACaagttttcgtttcaaaCGAGATACAAA-TCAA--CCAAAATGCAGTTTCTCATCGGTAAgctttttattg---tttt--ctgttaTATAGAGAGTAActtcagaacaaaaattcTCTGGCAAACTTTGTCGAAAGTTCCACAAAAGATGTGAATTTCATTC--
i caeSp111.Scaffold514   C 0 I 106
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=3228.000000
s ce10.chrX              1569018 30 + 17718866 AAAAAACTTTTCAGAACAAAAACCAACTTC
s cb4.chrX                733818 23 + 21540570 -------TTTACAGAATAAAAACCAAATGA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123136 25 +   199417 aa-----ttttcagaacaagaaTCAACTAA
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeSp111.Scaffold514    115278 106 +   141934 I

a score=-16762.000000
s ce10.chrX              1569048 225 + 17718866 GAAATTTTCTC----------ACAAGCTCTGCAGAAGATGCAAA----------TTTTATTC------------------TGACTACCTACTCCG-----------------------GTACCTCAACGGTAAT----TTCTCAAAAGTTATTGAAA----------TTCACCTCAAATTTTTGAAAATT-------------------TCAGAAAACTGAACCACTTACAA-------------------------------------------------------------AACAACTTGCATTGGATCAACTTGAAGCCATCAAGGCAGACGGCTCTTCAGCGGTGAAGCAGTCTTCGTGAGT------TTT-----------CTTTTTTTTCA--
s cb4.chrX                733841 220 + 21540570 GAAACTTCATA----------AACAGTGTTTCATCTGACACCAA----------TTTCATCT------------------TTATGCCATATGCAG-----------------------ACTCCGCCACTGTAAG------------------CTAaa----------tataataaacattt-tattcatttttaacA------------CTAGGTGAGTAATCTCGCTAGTA-------------------------------------------------------------AAGATTCCGTCTTGGCTCAGCTGGATGCATTGAAAACAACGAAATCGGTTACCATCAGTCAAGCTTCGTAagt------cat----------tttgttttttttca
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123161 243 +   199417 TGAAGTTTATC----------GAAAGCACCACGGACGatgtaaa----------tttcaaat------------------tgatttcgTATTCGG-----------------------ATTCGGCAACAGTGAG----TATT---ATATCTTTCAAA----------TTTACTATAGATTTACActaatttgtttc---------------agaaaacttcttTAATCAGTA-------------------------------------------------------------AAAAACAAGTTCTGGCCCAACTGACAGCATTGGGAACTCAACCGTCTTCAACAATCAAGCAATCAACGTGAGTAtgatacattaaaaaaaaatttaccttTCTT--
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    115384 379 +   141934 AAAACTTTCTCACtgttaagaaaaaatactgtaAAACCTGTAAAAGATTAGCTCTTTTATTTGTCTTGCTCCTCCAATAGTCTTGCTCTATGCAAAAGCGTTTGAACAATAGTCTTCCACCCAACCATAGTCTGGCTTCTTT---AATTCTATTAAAAAACACTATTTTTACtccacatttttgaaaatttgatataAAAAAGCCCAGTtcacaaagtttttttttctaaaaaatggtTCGAAAAATGGATGTGTATTTCTGTTGCTTTTTCAGACTTCTAATTTGCTGTCACAAGACCAAGTTTTGGAGCAAATCAAAAGTGCCGGTACTACAGAATCAAAATCGATCAGCCAGTCAAAGTGAGA------TAt---------agcaattttttca--
i caeSp111.Scaffold514   I 106 I 21
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=-2566.000000
s ce10.chrX              1569273 28 + 17718866 GATTTTTCATAGTATCTGTAAAGTTGTG
s cb4.chrX                734061 15 + 21540570 ca------acaggttttg-------aaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123404  3 +   199417 -------------------------ATA
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeSp111.Scaffold514    115763 21 +   141934 I

a score=13646.000000
s ce10.chrX              1569301 109 + 17718866 TTTTAGAGCTATTGAAAGTTACGACCCATCTGCATATAGTAACACGGATTTAGTTTTTTTCACGCCTTGTCAGACAAATTACGAGTGAGtt---------------------aataatttttcaaataaa
s cb4.chrX                734076 130 + 21540570 tttcagagctttCAACAGCTACAATCCGTCAGCACATGCTAATTCggatttagtttttttcacaCCTTGCTCTACGACATACAAGTTAGTTTGCAATAAATTTTCttctataaatattttttaaactgaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123407 105 +   199417 TTACAGAGCCTTTGACAAATATGATCCGGCAGAGTACAAAAACTCAGATTTAGTATTTTTCACTCCATGCAAAAATGACTACCAGTAAGTT----------------------ATatgtttca---tgaa
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    115784  99 +   141934 TTTTAGAGCGCTTGCCAGTTATAATCCTAATGCTTACTCAAACTCAGATTTGGTGTTCTTTGCCCCATGTACCACTGGTTATAGGTAGATT-------------------TAAGTATA------------
i caeSp111.Scaffold514   I 21 I 22
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=-1566.000000
s ce10.chrX              1569410 33 + 17718866 aaa--------aaacttagtaaaaa-aattaaaattaaaatt
s cb4.chrX                734206 40 + 21540570 aaaccGGGACCGATTTCaccaaaaatcatagaaatccAA--T
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123512 17 +   199417 aaa-----------------------tattaatacCGAA--T
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeSp111.Scaffold514    115883 22 +   141934 I

a score=22346.000000
s ce10.chrX              1569443 155 + 17718866 aa--------tttCAGCGGGATCGAAGATGATATTAAAAATGTTCAAACTGCCATCAAC---AAAGTTATTACAAAAACATTTGTGATTGTGTCACTATCACTGAATAGTACTGATATGAACAGTAGATATGGTG---AAGCAGCGCATAATATTCCAACAACTCCGAC
s cb4.chrX                734246 166 + 21540570 AGTACTATCATTTCAGGAACTACGATGAAGATATGAAACAAGTCCGTGACAGTATCAAG---AAAGCcgaacagaaaaaatatgttatCGTATCACTTTCAATGAATGCAACCCGAATGCAAGATCAATATGGAGATCAAAATTCTCATAACATTGCTACCAACGCAAC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123529 161 +   199417 AT--------TTTTAGGGGCTATGCCGATGATATGAAAACTGTGCAAGACACAATCAAAACTAAAGTGGTTGAGAAGAAATATGTGATAGTATCGCTAGCGATGAACGTCACACAAATGAAACAACAGTATGGAGATGATAACAGTCATAATATTGCTACAAACTCAAC
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    115905 158 +   141934 ---AC-----TTTCAGTGGATATGATGATGATATAAAGAATGTACaagaaacaataaattcaacattgaaaaataacaaatatGTGATTGTTTCACTGGCAATGAATATTACTTACATGGGGCAAAAATATGGAG---AGAATTCGAATAATGTTGCTTCAAATTCGAC
i caeSp111.Scaffold514   I 22 I 140
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=958.000000
s ce10.chrX              1569598 166 + 17718866 AGAAGATATTTCGAATAAAATTAATAATATTCTGAATATC---GG-TAAGATTTTTTAACTAGATATATTTTTATTAAACTAAA-TCTTAAACTCCAGGAACAACTCAAACGCCAC---------------------CGGTAACCACATCAACAATGGCTACAACGACTGCCAATGTAACTTCGGCAGCTCC---
s cb4.chrX                734412 163 + 21540570 TGAAGATGTGTcccaaaaaattaatcaagTTCTTACCCCAGAAGGTTGATAATTTTATAAATAACgaattattacaaaaaaatt-ttttcag---caactaCAGTTTCAACGACAC---------------------TTGTAACAACAACGTTAACACTTACAACCA----AGCCAT--CAACTGCAGCTCC-GC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  123690 194 +   199417 AGGCGATGTATCTCAAGATATCAACCACGTCTTGAACCTTCCAGG-TAAGAAGtttcgaaatggaaaaagtttagaacaaaattattttcagtgtcaaCCACCACTTCAACTACCCGAGCACAGATGAATACCACCGTAGTCATGACAACGCAAGCGGCAACAACCACCGTACCCGTAACAACAACCGTACCAGT
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeSp111.Scaffold514    116063 140 +   141934 I

a score=-10665.000000
s ce10.chrX              1569764 192 + 17718866 AAACACTACTGTCACAATTTCTA--------CAT-CTCCAACAACGGTTGTAACAGTTCCAAGTACAGCTCAAACAAGTTCTACTACAACAGTAAC---------GGTACCTACTAC---------GACAGTCAC---AGGCCCTAC---TACAGTAGTAACCGTTCCTACTACGGTGGTGACAATTCCAAGTACAGTAGTCACCAGCCCA--ATCACAACGCCATC---
s cb4.chrX                734575 160 + 21540570 AAACTACAACACAGCCACCTCCA-GTCACCGAAC-CACAAG---------------TGACAACT---------------TCCACAGGACCGGTCAC---GCAACCAGTAGCTAC------------AACAACAACGCAAAACATTCCTGTGACAACGACGACAACATCAAAACC---AACGTCTGCGCCAGCTGCA-----------------ACCACAGCCACATC---
i cb4.chrX               C 0 I 7729
s caeRem4.Crem_Contig196  123884 207 +   199417 AGTCTCAAGTTCAGCAGCTCCTATGTCGTCGAGCACTCAAGCTCCACCAAAAACTACGCCAACTACTGTAACTACGAAACCCACTTCACCAACTAC---TGTGACAGTGCCCACTGt---------gccaactacagtaaccattcC---AACTACAGTGACCACGCCAACTAC---AGTGACCATGCCAAGTACAGTAACCAT--GCCAAGTACAGTGACCACGCC---
i caeRem4.Crem_Contig196 C 0 I 3
s caeSp111.Scaffold514    116203 204 +   141934 GAACACTACTGTAACAACTTCTA--CTATTGTAC-CGTTAGAAACTTCGACAG---TGCCAGTTACAACCACATCAACATCTGGAGCACCAAAAACAAGTGAAGCAACATCCACTACTGTAGTACAGACAAGTACAACAGAGCTCAC---AACAACAGTAACCAAGACGAGTCC---AACAACAACTGTAAC-GCAGTCA-------------ACAAAACCAATAACCCA
i caeSp111.Scaffold514   I 140 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I

a score=-1544.000000
s ce10.chrX              1569956 240 + 17718866 TACGGTAGT---AACAGTT------CCTTCCACGGTT---GTGACCGTCCCTTCTACC---------------GCGGTGACAAAACCAAGTACAGTAGTCACAGCACCGTCTACTGTAGTGACAGTCCCTTCTACAGTGGTCACAAAACCAAAT---ACAGTAGTCA---CAAGTTCACCGACGGTAGCGACGACTCCTACTACGGTAGTCACAACGCCATCCACAGTAGTAACAGTTCCGTCGACTGTAGTAACAGTTCCTACTACGGTGGT
s caeRem4.Crem_Contig196  124094 243 +   199417 TACAGTAACCATGCCAAGTACAGTGACCACGCCAAGTACAGTAACCATGCCAACTACAGTGACCACGCCAAGTACAGTGACCATGCCAAGTACAGTGACCA------CGCCAAGTACAGTAACCATGCCAACTACAGTGACCACGC---CAAGT---ACAGTGACCATGCCAAGTAC---------AGTGACCACGCCAAGTACAGTA---ACCATGCCAACTACAGTGACCA------CGCCAAGTACAGTGACCATGCCAAGTACAGTGAC
i caeRem4.Crem_Contig196 I 3 C 0
s caeSp111.Scaffold514    116407 186 +   141934 ------------GACAAGT------CCCACAACAAGT---GCCACGGAGCCAACGAAA---------------CCAACAACCCAGACAAGTCCAA---------------CAACAACCGTGACAGAGACTACTAGAACGACACCGCAGACAAGTCCAACAACAACCGTGACAGACAC------------TACTAGAACGACTCCACAA---ACTAGTCCAACAACA---------------------ACCGTGACAGAGACTACTAGAACGAC
i caeSp111.Scaffold514   C 0 I 18
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I

a score=27.000000
s ce10.chrX              1570196 12 + 17718866 GACAAATCCAAG
s caeRem4.Crem_Contig196  124337  9 +   199417 CACG---CCAAG
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeSp111.Scaffold514    116593 18 +   141934 I

a score=-1158.000000
s ce10.chrX              1570208 87 + 17718866 TACAGTAGTCACAGCGC------------CGTCCACAGTAGTAACCGTTCCTACTACGGTGATGACAAGTCGGTCTACAGTAAT---CACAACTCCAACGAC
s caeRem4.Crem_Contig196  124346 99 +   199417 TACAGTAACCATGCCAAGTACAGTGACCGTGTCATCAACAGTGACCGTACCAACTACAG---TGACCACGCCAAGTACAGTGACCAtgccaactacagtaac
i caeRem4.Crem_Contig196 C 0 I 18363
s caeSp111.Scaffold514    116611 55 +   141934 ---------------------------------AACAACCGTGACGGCACCACGTTCTC---AGACTAGTTCAACAACGGTGAC---ATCAACT--------
i caeSp111.Scaffold514   I 18 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I

a score=5573.000000
s ce10.chrX              1570295 1227 + 17718866  
s caeSp111.Scaffold514    116666 1143 +   141934  
i caeSp111.Scaffold514   C 0 I 28
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=0.000000
s ce10.chrX              1571522 47 + 17718866 ATCTGGAGCGTCAACAATGAGCCCGTCCACTGGATCCAGCGTGGAGA
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeSp111.Scaffold514    117809 28 +   141934 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=8753.000000
s ce10.chrX              1571569 1208 + 17718866  
s caeSp111.Scaffold514    117837 1208 +   141934  
i caeSp111.Scaffold514   I 28 I 2741
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=0.000000
s ce10.chrX              1572777 408 + 17718866 TCATCCACACAACCACCATCAACAAGTACAGAGTTAACAGGCGCGAACAATAAATTTGGACATTCCATATAAATCTTTATCGATTCTGAAAGACTGACTTTCAAAATATTGTTTTTTTTCAGGATCGTCAGTGCCAACAACTTCCATAACAAGTTAGTTGCCAGCAAAACTTTGGACTAGAAACTCATAACAATGTGTCACTATTCGAGATTTAATGTCATTTTTTACAGGACGAGGGCTCCTGATAATTTATTGAAATAAATAATGTTACAAACTTTTTTCTCGTCTCGGAACATCACGTGTAGAATCATTCGATTTTCTCTAACAATTGATGAACCGTAGAATAGATATTAACTAGTCAGCTTTAGTCCAGCTAAAAATTTAGAATTTATAGTCTCAGAGCCTCAG
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeSp111.Scaffold514    119045 2741 +   141934 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=3319.000000
s ce10.chrX              1573185 105 + 17718866 TTTCAGAACCTACCGTAACCTGCCTTTTCATGTATGACACACAATCTTCTGATATCAGTCAAGAAGCTCTCACTACATATCAAACGGTAGGCATATTGAATTTTC
s caeSp111.Scaffold514    121786  96 +   141934 TTTTAGAGCCGAATGTGACTTGTTTGTTTATGGTTGATATGCAGTCTTCTGGAATTGATCAAAATGCGATTGCAACTTATCAAACGGTAT---------ATTTCC
i caeSp111.Scaffold514   I 2741 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                734735 7729 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=9978.000000
s ce10.chrX              1573290 229 + 17718866 GGAAAAAAAACTGGT--------AAACGTCTAATTTTCAGTACTACAATTTTGTCAGACTGATTTCGTCCAAATTAAATGACCGATCAATTTTGAGCGGAAATTTTGATCATTTTGGATACGGTCCCGGAGGCGAAGATCATGAAACTTATCAAATTGATGACTATGCAAATATGAACAGCATACCATTTCCGTTACATGCATCTGACACTGACATTGATCTTGATTTGAAAGAGTG
s cb4.chrX                742464 233 + 21540570 GCAATAATAAACAGTCCAA----AGACATATGGTTTTCAGTATTGGAACTTTGCAATGACAGTCGCATCAAAATTAAATGACGCATCCACGTTCACTGGTTATCCTGATTCATTTGGTTACGCGAGTGGACTAAACGATCATAGTAAATATCCAGTTAACAATTATACGGATTTCAAAAACGTTCCCATGCCAGTGGAGGATCTAGACGACGGAATTGATTTGGACCTCAAAGAGTG
i cb4.chrX               I 7729 I 42
s caeSp111.Scaffold514    121882 233 +   141934 ----AAAGAAAGTGCCAAACGCCaatcaaatttatttcagtaTTTCAATTTTGCCAAACTCATAGGAACTACTTTGAACGATCAATCTTATTTCACCGGTTTTATCGATAACTTTGGTTATTCTGGTCAACTCTCCAATCGTAAAAATTACACTGTCTTAAATTTCATCAACTTTGAAACCATTGGTTTTCCAATAGACGGAACAGACGATGATATTGATTTAAATCTTGATGAGTG
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=4065.000000
s ce10.chrX              1573519 393 + 17718866 AGCT---------AATAGGTTT--TATAAATTG------AA--ATGTTTATTTTTATGTTTAGTGTGGATGGGAGCATGGCTAGTGCAGGATGGTCATC------AACTGTCAAT---GGTGAAACCTGCATGATTTTTATTTCTGCCGCGTGAGTTTTT---------TTTAAATTTTACAGAACGTCCTTTTTGTAAATTTAGTTCAAAGAAATTGT---AATTTCAAATTTTT---------------------TAATAAGAAAT-TATGTTCCGATAATGATATAATTATT------------------TTTCCAGGACAGGAACTGCCTACGATGGTACTACAATTAAGCCAACATATAATAATTTCAAAACAGTGATAGGCGTATTAGTTGGAGG--TACTTGAACTATAGA-------AAAATATCACCTAG--TAGATTTACAATTTCAGGAGCCACAAGCATTCCAGGACTGACT
s cb4.chrX                742739 413 + 21540570 AGCTACGAAATTCAGTAGTATC--TGAAATCTGTCAAGAAATAAAGTTTATTCTTGATTTCAGTGTTGATTCAACTCTGACTCAAGCGTCATGGATGCCTCTGGTTCAAACAGATCTGCATCAAACATGTCTAATTTTCTTCTCTGCTgcgtaagttttt---------tttgctt------taatgttttca---------tgttttcaagAAGGTGCTCGAATTGAATA---GTCCAACTGCTG-----------CAatatgcttc-tttttttcgagattaaaaaactggt-------------------ttttcaGACCCGAAGCGGAATTCGGAAGTACTACTATCAACTCCACATATGTCAATTTCACAACTGTTATTGGCGTTCGTATTGGAGGTATATTCTAGTAAGAGT-------AAAATCACAATTAACTTCAAATTA----TTCAGATGCCACCTCAATACCGGGAATCACT
i cb4.chrX               I 42 I 563
s caeSp111.Scaffold514    122115 439 +   141934 -------------AGCAGTAGCGTTGTACTTTGTC----AATTACGTGCAATATTG-TTCCAGAGTTGATGATACTTTGAAAATGGCAAAATGGAACCC------AGAAGCTGAT---GATAACACTTGCATGATTTTCATATCAGCAGCGTGAGTTTCTAGAACAACATTTGATTAGAATGTGATGCATTAGGTGCA---TTGTCATGAAACAAGTGC---ACTTTAATATTGGTACACCTGTAGTTGTACATTCATGATACGTTTTGTTTCTTGCAATGGTTCAACGCtagttttttagtttaatgattcattttcaggcCTGAAGCAATGTACAACAATACTTCAATTGGACTATCATATGCTAGTTTTAAAACAGTCCTTGGAGTTTTAGTTGGAGGT-TGTTTTGATAAtcattgttttaaaaaacccaA------TCAAGTTA----TTCAGGTGCGACTTCTATCCCTGGGTTAAC-
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=74.000000
s ce10.chrX              1573912 147 + 17718866 ACAGGTACAAATGTGGTCACAGCAGATTCACTGAATGATTCCGATGCTGAAAATGTTGTGAACACGTTGCTGGGACTTCTTCT--------------ATCTTTGTAGATGTTAAATTATACCTATATTATACAACCTGT------------ACATGATATGTATCGATAACAG
s caeSp111.Scaffold514    122554 165 +   141934 --------AGATCCTCTCACTGCTACCACACTATCAACTGCTGATGCAGAATCTGTTGTACAAAAGCTTTTAGAAATTCTACCGTAAAATTTGATGCATTATtgtaatttctgaattttccaaaCACCCAACGGTTTTTCGACTCTCTTCAATACGATAATTTTCTATTGCAA
i caeSp111.Scaffold514   C 0 I 71
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=0.000000
s ce10.chrX              1574059 150 + 17718866 AGCTTTTTGTTTTATAGATAAACATTGAATTGAAATGTGAAAAATGAATCTACGAAGAAATttaaaggtgaagtagcgccagtggggattttttctaaatacacgtataattttccaaaacgaccgaatatcataaacataataaataat
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I
e caeSp111.Scaffold514    122719  71 +   141934 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=-1246.000000
s ce10.chrX              1574209 668 + 17718866  
s caeSp111.Scaffold514    122790 496 +   141934  
i caeSp111.Scaffold514   I 71 I 36
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=0.000000
s ce10.chrX              1574877 51 + 17718866 AATATCCTTGTTCAAGCATTTGCACCAGGGCTGTGCGGCaaccagcaattg
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I
e caeSp111.Scaffold514    123286 36 +   141934 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=-2084.000000
s ce10.chrX              1574928 156 + 17718866 ccgaagttgccgaacccaaaaaatttcggcaaccgacaacttttgattgccgaaacttcgtcaacttttcggcaaccggcaaCCTGTAACAGCCCTGTTCTGCACCATAATTTGTTTATTTTCAAAAAATTCTATTTTTGCTACTAAACCTACTCC
s caeSp111.Scaffold514    123322  46 +   141934 CCAACATTTTCGAAtcta----------------------ttttaa----------------aacattCCGGC---------------------------------------TGTTTATTTTC---------------------------------
i caeSp111.Scaffold514   I 36 C 0
e caePb3.Scfld02_133        2015 1419 -   344637 I
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I
e caeRem4.Crem_Contig196  124445 18363 +   199417 I

a score=860.000000
s ce10.chrX              1575084 68 + 17718866 AATTCCAATCCCCC----TTCTCCCTCTCCAG------------TCCCCCAAA---TC-----TTCAACAAACGGAATCAGAAGCCCAAACG
s caeRem4.Crem_Contig196  142808 85 +   199417 aattccaatcaCC-----TTCTCCctttcctcattttcaccG--TCTCCTTGATATTCGGTAGGCGgaaaaagggaaacagcgaaaaaggcc
i caeRem4.Crem_Contig196 I 18363 C 0
s caeSp111.Scaffold514    123368 56 +   141934 --------------TCCATTCCATAGTCCC--------------TCCCTGTGA---TCAATagtacaaaaa----agaaa-cagacaAAACC
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        3434 88 -   344637 AATTCCGATCACCCTCCATTCTctctttcctcattttcacccTTTCTCTTTGA---TCGGTagaacgaaaaaaggaaaca-caaGAAAAGCC
i caePb3.Scfld02_133     I 1419 C 0
e caeJap4.Scaffold16506    86832 5828 +   115485 I
e cb4.chrX                743152 563 + 21540570 I

a score=2074.000000
s ce10.chrX              1575152 10 + 17718866 AGGAAG-ATAG
s caeRem4.Crem_Contig196  142893 11 +   199417 aagaagaataa
i caeRem4.Crem_Contig196 C 0 I 17
s caeSp111.Scaffold514    123424 10 +   141934 TAGAAG-ATAA
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        3522  9 -   344637 AAGAAG-ATA-
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    92660 10 +   115485 AGAACG-ATAG
i caeJap4.Scaffold16506  I 5828 C 0
e cb4.chrX                743152 563 + 21540570 I

a score=67328.000000
s ce10.chrX              1575162 319 + 17718866 ---TGAAAGATAGGAAA----AGATACA-AGGG---GGT----GGTGATAAACAGGAAGGTTGCAAGCTTGTTATTAGTCGCAATGCCT------TTTTCTCTCA-------------TCCATATCC---------ATACC--------------------------------AACAGTCCAAATGCTTGTCCCCCCTCCCCACGTCCCTCCTGCTTCATCATCTCC-------T---TCT------------TCCCGAAACAGTAGCAGCAGCAGCAGCCTGTCTCTTTTT------------CTTTTCCTTTCCCC-ATCCCCCGCCTCCCCCATTTC------CAACACAACCGTCGTCATCAAGATTAAGCCCTG-TACGCTCCGCCCACTTTTGCATTCTTCTCCCAATTT-TCGGCTTC------------TCTCTTCTTTCC-
s cb4.chrX                743715 367 + 21540570 ---TAAAGGATAAGAGAATACAGATAGA-AGAGAGGAAT----GGTGATAAACAGGAAAGTTGCAAGCTTGTTGTTAGACGCAATGCCTGTATACACCACCCCCTCCCTTCTACtcattcttcttcctctcaaTGGATATCTTCCACCGCTGTCCGCCACTACCACCAC-----ACAGGCT-Tatgctttttcttctt--cctagtc-cttcttcttcatcatttcT---TGTCCAGATCT---AATTTTCT-TCCC-A------------TGCATCCGTCCTTCCACGTTT------------CTCTA------------AGCCTCCCCCGCTTCTTCC------CAACACAG-CGCCGCCATCAAGATT-AGCCCTG-TAGACCGCGCCCACTTTTAGtttattcttcaattttctcctcCAT------------ACCCTTTTCTGT-
i cb4.chrX               I 563 C 0
s caeRem4.Crem_Contig196  142921 353 +   199417 ---gaaaagatagggaa----agataCA-GGGGTGGGGT----AGTGATAAACAGGAAGGTTGCAAGCTTGTTATTAGTCGCAATGCGTGTATACTTCCCCCCAT--CTGACAGTCCTTCCTCCTCCTTCCAATACATatc---------------ccaccaccaccacaggCAACAGTCCAAATGCTTCTTCTCC---------------cttcttcatcattttccaatgtct---ctt---cgtcttct-tcccGA------------TGCAGCAGCCTTCTCCCCTTC------------TTTCACCCCCCACTTCTATCCTGCCCCCTCTCTTCC------CAACACAA-CGCCGTCATCAAGATTAAGCCATG-TAGGCGCCGCCCACTTTTGGAttcttctcccatttt-tctttctc------------acccCCTTTTTC-
i caeRem4.Crem_Contig196 I 17 C 0
s caeSp111.Scaffold514    123434 333 +   141934 ---AAGAAGATAGAAT-----AGATACACGGGGCGCGGT----AGTGATAAACAGGAAGGTTGCAAGCTTGTTATTAGCCGCGATGCGTgtattcttctctctca--ctGc-------cccccttccccccA---CATATT-------------------CACCACCACAGGCAACAGTCTAAATGCTTCTCCTTC----CCCAGTC----CTTCTACATCATTTTCTTGCCTCT---CCCCCACGTCCCCCATCCCGA------------Ggcttccttctttcttctctt---------------------------cttttcttttcttcctcttcc------caaCATAA-AGCAGTCATCAAGATTAAGCCCTC-TATGCCCCgcccttttttgaattcttctaacatttt-tccgtctt--------------cttcttttct-
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        3531 320 -   344637 ---------GTGGAAA-----AGATACA-GGGGTGGACTACCCAGTGATAAACAGGAAGGTTGCAAGCTTGTTATTAGTCGCAATGCGTGTATACTTCCCT-----------------TCTCCATCC---------------------------------------------CAACAGTCCA---------------------Agtc----cttcttcatcattttcttgtctct---ctt---catcccccctccctt------------tttctctttttggcttctcttcccGAAGCAGGCCTTCTCCCCCAACTGCCTCCCCTTTTTCCCTTCCCC------CAACACAA-CGCCGTCATCAAGATTAAGCCCTG-TATGGCCCGCCCACTTTTGGAttcttctcccatttt-tcttttcttccaccccccctcccccctttGAA-
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    92670 277 +   115485 TATACAACGGGAGGAgg----ggggagg-ggggTGGACT----AGTGATAAACAGGAAGGTTGCAAGCTTGTTAATAGTCT--ATGCGTGTACAATTCGCCTCCG------------------------------TACAAC-------------------------------CACCAg--------ctttttattc---------------ttttttcat--tttcggcTTCTCT---Tcc---cccccTCCATCAC--------------TTTCATATCCCGGCCCCCATC---------------------------AGCTTCTTCTCTCCCCTTTTCGCAAAGCAACACTG-CGCCGTCATCAAGATTAAGCCGCGATTGGCCCCGCC---------------CTCGCAATTT-TCTCTTTT------------CCCTCTTCTTTTC
i caeJap4.Scaffold16506  C 0 I 419

a score=-13173.000000
s ce10.chrX              1575481 44 + 17718866 CACAATGGAG---CTAAT--------------TTTTTTGCGGCTTT--------TTTGAAATGTTTATA------------
s cb4.chrX                744082 67 + 21540570 GCCAATAGAT--ACAAATTATTGTTCAGTGTAGTTGCTAGAGCTTTGAAGATGACAAGTTTCAATTATA------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  143274 52 +   199417 GCCTATTGAT---CAACT--------------GTTTTTGGTgcttcactcattttttgactcatttata------------
i caeRem4.Crem_Contig196 C 0 I 485
s caeSp111.Scaffold514    123767 47 +   141934 gacTATTAATCCACAAA-----------------TTATAATgctgg---------------tttttgaaa--aaggttttA
i caeSp111.Scaffold514   C 0 I 205
s caePb3.Scfld02_133        3851 48 -   344637 GCCTATTGATCTACAGGC---------------TTTTTGGTGCTGC---------------CTTTTCCAAttgagatg---
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    92947 419 +   115485 I

a score=354.000000
s ce10.chrX              1575525 41 + 17718866 GTTTTCTCTTTATATTTTTGTTC---CGGCTTTTTTTGCTACAA
s cb4.chrX                744149 41 + 21540570 ---CTTTTTGAATAATATTGTTgtctaggttttttttttcacaa
i cb4.chrX               C 0 I 347
s caePb3.Scfld02_133        3899 29 -   344637 gttttttttgtttggttttgtta----------cttttt-----
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    92947 419 +   115485 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=-1227.000000
s ce10.chrX              1575566 227 + 17718866 AAACAAACTAACAATATAATAATTACTTCAGCATG-----AATTCCATTTCTTGTTTCA-------------TCTAATCCTT--TGCTTATGTATACTCAAATAATTCAGT-----TAAAAAGTTTGAGCATCT---------TTT----AAACTTTTTAATTTTCTGGCATTTTTGGTATC--TCGATTGAAAAGCTT-GAACACCTGTTGTCTAAGCCTGAAACTTAATTTTCAAGTTAAAGAGTAAAGCTTGAAATGTAAATTTT
s caePb3.Scfld02_133        3928 229 -   344637 --------------------agttacttttgtagggttcaaagcctagtttttgttCTAGGATAGGGGTAGCTATAATCTATGATACTCATGATTTCTCTGA--ATTGAATGGCACCAAAAATTCCTAGCGTTTGtagtcagttttcaaaaaaaatttctgtgattcgaaatttttatgatCGGCCCATTCCAAAGTTAAGACCATCTATTTTGGAATTCGgtcctttttttct-------atgagtAAA----------TAACTTTT
i caePb3.Scfld02_133     C 0 I 58
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=0.000000
s ce10.chrX              1575793 74 + 17718866 GTGTAAGCCTAAAGCCCATGCTTGCAGCTGAAACTCGAAAAATCAAACTAAGCAGCAAACGTTTGAGACTAGAA
e caePb3.Scfld02_133        4157 58 -   344637 I
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=806.000000
s ce10.chrX              1575867 129 + 17718866 CACAGAATTCAAAACTACCGTTTGAGCTGAA----TTTCTAGGCCTGTACAACGGTCAATTATATAATTATATAGTTCAAATTTCAGACAACAACAAAAATTGAGAATTAGATAAGCCTAAGCCTGAAAATAA
s caePb3.Scfld02_133        4215 123 -   344637 CATGGAAttcaaaact-------gggaaaaaattatttctcgaattttcgaaaaaaaaactctgtgctcaaaaaattcaaa---aacacaataaCCTGCACTATTAATTGTTTGTCCccaattcggagaaaaa
i caePb3.Scfld02_133     I 58 I 203
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=0.000000
s ce10.chrX              1575996 307 + 17718866 CCTCAAATCTTagcctaagcctcagcctaagccttagccaaagcctaaacctaagcctgagtctgttccgatgcctaagcttaagcctaagcctaaaccttcatctaagtcaaagcctaagcataagcctacgtctaagctgaagccgaagcctaagcctaaacctaactgagtttaagccaaaacctcagcctaagtctaggcctaagactaaaaataagcctaagtctgagttaaagcctgagcgaagactaaacataagcctaagccgcagcatcagcctaatcaaaatcctaagcctaagctt
e caePb3.Scfld02_133        4338 203 -   344637 I
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=226.000000
s ce10.chrX              1576303 87 + 17718866 aaaactcagcgtaagcctgagcctaagcctaGCTCCAAAACGAGCTCCAACCTTCAGTTTGTCCTTTTTTGGCTAAACTGTAACCTT
s caePb3.Scfld02_133        4541 50 -   344637 aaaattca---------------------------caacaCAAATCACAAC----------TACTTTTTTGCATAATCtctatcatt
i caePb3.Scfld02_133     I 203 C 0
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I
e caeRem4.Crem_Contig196  143326 485 +   199417 I

a score=2798.000000
s ce10.chrX              1576390 214 + 17718866 TAAGCAGGTGTTTAGCAAATTCTAAAATTCTTGTCCAAACCAAGTTCTGTCCAACAACCAAAGATT---TCTTCAATTTTTTTTCTCTGCAAATTTTCACCAAAAAAA--GTGTCATCAATTCATATTTCCATTCCATGTCTAGCCACAGCTAATTTTCTTGTCTCAC------CTCTGTCCACCGCTCTAT--TATTCATTATTTCCGTTGCACCCCCCCCCCCCC
s caeRem4.Crem_Contig196  143811 191 +   199417 taaatatttttttaataagttctagattttttg------------------tagttttcagtaatt---ttttagaatcctattttCTAGa------cattaaaaaagaaacaatatgAACACATGTTGCTA----ATATCCCATCTCAAGTACTTCTCCCTCCTTCCCTCACTCTCAAGTTTCCTGTCCAC--TGTTCACTATTTCCGTTCGTCCAC---CTGTCA
i caeRem4.Crem_Contig196 I 485 C 0
s caePb3.Scfld02_133        4591 166 -   344637 ------ttctattcata---tATACATTTC---------------------TAGCCTCCAACACCTCCCTTTTCCTCCccttttctc------------ccaaaaaat-----atatgaacacATGTTGCTA----ATATTCGATCTCAAGTATGTCTCTCCCC----------CTTAATTTCCCCGTCCACAATGTTCATTATTTCCGttcgttcactttttttcc
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    92947 419 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I

a score=-691.000000
s ce10.chrX              1576604 21 + 17718866 TTCCAAAAAAAACA---------------TTAGAAG
s caeRem4.Crem_Contig196  144002 36 +   199417 TAATccaaaatccaagaaaaaaacccctctcaaaac
i caeRem4.Crem_Contig196 C 0 I 15
s caePb3.Scfld02_133        4757 21 -   344637 ttatgAAAAGTCag---------------tcaaaac
i caePb3.Scfld02_133     C 0 I 18
s caeJap4.Scaffold16506    93366 21 +   115485 TTGCCAACAAAAAG---------------TTAATAC
i caeJap4.Scaffold16506  I 419 C 0
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    123814 205 +   141934 I

a score=57952.000000
s ce10.chrX              1576625 131 + 17718866 TTGCAGAATGCGCCATCGAGCGTTCTCGTTCCAAATCGCCCTCGTTCTCGCCCTCCTGCAA------CCCTTTGGTGCCTCGTACTGTGGTTCAAATGGCGTGCCGTACAGTTTAGAAATCCTGTCTGATGGTTTGT
s caeRem4.Crem_Contig196  144053 134 +   199417 ttgcagaatgCGCCATCGAGCGTTCTCTTTCC---TAgtccttctcttttcaattctacAATTCCACCTGATCAACGCCTCCTACTGTGGTGCAAATGGCGTGCCGTACAGTTTAGAAATCCTGTCCGATGGTTTGT
i caeRem4.Crem_Contig196 I 15 C 0
s caeSp111.Scaffold514    124019 128 +   141934 tttcagaatgcgGTATCGAGCGtcaatcttat---tttttctcgttttctcgtttcttccA------CAAATCAATTCTTCCTACTGTGGTGTAAATGGGGTGCCGTATAGTTTGGAAATACTTTCCGATGGTTTGC
i caeSp111.Scaffold514   I 205 C 0
s caePb3.Scfld02_133        4796 128 -   344637 TTGCAGAATGCGCCATCGAGCGTTCTCTTTCC---TAgtccttctcttttcaattctacaa------aatattGATGCCTCCTACTGTGGTGCGAATGGGGTGCCCTACAGCTTGGAAATCCTGTCCGATGGTTTGT
i caePb3.Scfld02_133     I 18 I 30
s caeJap4.Scaffold16506    93387 126 +   115485 CGTAAAGATGCGCCATCGAGCGTTTCTTTTCC---TA------CTATTTTCTATTCTATCACACCACACTTGTGTGGCGTCGTATTGTGGTGCAAATGGGGTGCCATACAGTTTGGAAATCCTGTCCGACGGTAT--
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                744190 347 + 21540570 I

a score=1059.000000
s ce10.chrX              1576756 6 + 17718866 GTTTGC
s caeRem4.Crem_Contig196  144187 6 +   199417 TTGTAC
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    124147 6 +   141934 TTTCAC
i caeSp111.Scaffold514   C 0 C 0
s caeJap4.Scaffold16506    93513 6 +   115485 GTTTGC
i caeJap4.Scaffold16506  C 0 I 36
e caePb3.Scfld02_133        4924 30 -   344637 I
e cb4.chrX                744190 347 + 21540570 I

a score=391.000000
s ce10.chrX              1576762 3 + 17718866 TTT
s caeRem4.Crem_Contig196  144193 3 +   199417 ATT
i caeRem4.Crem_Contig196 C 0 I 25
s caeSp111.Scaffold514    124153 3 +   141934 TTT
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        4924 30 -   344637 I
e caeJap4.Scaffold16506    93519 36 +   115485 I
e cb4.chrX                744190 347 + 21540570 I

a score=553.000000
s ce10.chrX              1576765 11 + 17718866 GACAAATAGAA
s caeSp111.Scaffold514    124156 10 +   141934 -ATAAATATAA
i caeSp111.Scaffold514   C 0 I 1
e caePb3.Scfld02_133        4924 30 -   344637 I
e caeJap4.Scaffold16506    93519 36 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeRem4.Crem_Contig196  144196 25 +   199417 I

a score=0.000000
s ce10.chrX              1576776 545 + 17718866  
e caePb3.Scfld02_133        4924  30 -   344637 I
e caeJap4.Scaffold16506    93519  36 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeSp111.Scaffold514    124166   1 +   141934 I
e caeRem4.Crem_Contig196  144196  25 +   199417 I

a score=373.000000
s ce10.chrX              1577321 4 + 17718866 AGTA
s caeSp111.Scaffold514    124167 4 +   141934 AGTA
i caeSp111.Scaffold514   I 1 C 0
e caePb3.Scfld02_133        4924 30 -   344637 I
e caeJap4.Scaffold16506    93519 36 +   115485 I
e cb4.chrX                744190 347 + 21540570 I
e caeRem4.Crem_Contig196  144196 25 +   199417 I

a score=-550.000000
s ce10.chrX              1577325 12 + 17718866 --TTATAACCAATT
s cb4.chrX                744537 12 + 21540570 --TCATGATGGGTT
i cb4.chrX               I 347 C 0
s caeSp111.Scaffold514    124171 10 +   141934 ATAtatgatt----
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        4924 30 -   344637 I
e caeJap4.Scaffold16506    93519 36 +   115485 I
e caeRem4.Crem_Contig196  144196 25 +   199417 I

a score=546.000000
s ce10.chrX              1577337 1 + 17718866 T
s cb4.chrX                744549 1 + 21540570 T
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  144221 1 +   199417 T
i caeRem4.Crem_Contig196 I 25 C 0
s caeSp111.Scaffold514    124181 1 +   141934 t
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133        4924 30 -   344637 I
e caeJap4.Scaffold16506    93519 36 +   115485 I

a score=1798.000000
s ce10.chrX              1577338 9 + 17718866 TCCATTCCA
s cb4.chrX                744550 9 + 21540570 CCCTCTTTA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  144222 9 +   199417 CCTTTTGTA
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    124182 8 +   141934 -ttcttgaa
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        4954 9 -   344637 TCTTTTGTA
i caePb3.Scfld02_133     I 30 C 0
e caeJap4.Scaffold16506    93519 36 +   115485 I

a score=165673.000000
s ce10.chrX              1577347 172 + 17718866 GGCTCCCCGGTACTCGGATGCGCGCAGCCGACTTGTATGGCCGAGCCGCAGGAGGACGAGGAGGACAGCGTGTTCATTGCCAATACAGCTGGACAGGAAGATGGATTTTTCCGTGAAGGTGATAGGCAGAAGAAGAGCTATACGCAGAGTTATAAGCCTAAAGCGGTGAGTT
s cb4.chrX                744559 172 + 21540570 GGCTCACCAGTGCTGGGCTGTGCTCAGCCAACTTGTATGTCCGAACCATTAGAGGATAACGAGGATAGTATTTTCATTGCTAATGCTGCTGGACAGGAAGACGGATATTTCCGAGAAGGAGACAGGCAAAGGAGAAGTTATTCGCAGAGTTATAAACCGAAAGCCgtgagtt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  144231 172 +   199417 GGTTCGCCGGTGCTTGGTTGCGCACAGCCGACTTGTATGGCTGAACCATCTGAAGATTACGAGGATAGCACGTTCATAGCAAACGCTGCCGGACAGGAAGATGGATTTTTCCGAGAAGGTGACAGGCAGAGAAAGAGTTATACACAAAGCTATAAACCAAAGGcagtaagtt
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    124190 172 +   141934 ggTTCTCCAGTGCTTGGATGCGCACAGCCAACTTGTATGGCAGATCCCTCAGAAGATTACGAAGACAGCACGTTCATTGCGAACGCTGCAGGGCAGGAAGATGGATTTTTCCGGGAGGGTGACCGACAGAGAAAAAGCTATACACAGAGTTATAAACCAAAAGCCGTAAGTT
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        4963 172 -   344637 GGTTCACCGGTGCTTGGTTGCGCACAGCCGACTTGTATGGCGGAACCATCAGAAGATTACGAGGATAGCACGTTTATAGCGAATGCCGCCGGACAGGAGGATGGATTTTTCCGGGAAGGTGACAGGCAGAGGAAGAGTTATACACAGAGTTATAAGCCAAAGGCGGTGAGTA
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    93555 172 +   115485 GGTTCTCCGGTGTTGGGATGCGCCCAACCGACTTGTATGGCAGAACCATTAGAGGATTACGAAGACAGTCTTTTTATTGCGAATGCAGCTGGACAGGAAGATGGATTCTTCCGTGAAGGAGATAGACAAAGGAAAAGCTACTCTCAGAGTTACAAGCCGAGCGCTGTgagtt
i caeJap4.Scaffold16506  I 36 I 1739

a score=-10074.000000
s ce10.chrX              1577519 16 + 17718866 TCT---GAGGGAAAAATTT
s cb4.chrX                744731  7 + 21540570 ttt---a---------ttt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  144403 13 +   199417 ttc---aa---aaaagttt
i caeRem4.Crem_Contig196 C 0 I 1674
s caeSp111.Scaffold514    124362  6 +   141934 GGATTT-------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        5135  3 -   344637 Gaa----------------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I

a score=-8926.000000
s ce10.chrX              1577535  99 + 17718866 TGAAGAAAAAACAATttt----ttttcgaaa-----tttttttcgaatttttttcTAC------AAATTTATTTTC------TAGATCAATTATCAACTGAATTTTAATGTTCTCAACG---T--
s cb4.chrX                744738  94 + 21540570 ------tgattcaaattttgtatttcGGGAA-----TTATTATcgaatttctattaaatt----gaGTTCATTTCTAAGTTATAGGGTCAGGGAAAACA-----------TTCTCAACA---T--
i cb4.chrX               C 0 I 903
s caeSp111.Scaffold514    124368 103 +   141934 --CATGaagatcatttttttaatttttcaaa----tttatctCCGCATGTTTTTTAAACGTCTATATTCTAATT--------aaaactcttcaaaaacatgcgat-----ttttcgaca---ttt
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133        5138 113 -   344637 ------aaaaacacgtattggatttttcaaaaaagttttttggcgaaaaaaatgaaaatg-atgtaatcgaatttcaaaaaaaaaatttttgaaccactaaattt-----ttttccatagtttgt
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=-4.000000
s ce10.chrX              1577634 60 + 17718866 ATTTTTCCATATATTTTTTTCAA----TTCCTCCATCTCCAATTCCTCATTCCAAAACCCGTTA----
s caeSp111.Scaffold514    124471 62 +   141934 agttttctaaatattttgtGGCA--TTTGCCACCACATTCAATATTTACATTCGAACCTTGTTA----
i caeSp111.Scaffold514   C 0 I 1828
s caePb3.Scfld02_133        5251 64 -   344637 agtttttcctctatttttccaaaattttttctcttccttc---gtCTAAA-CCAAACCTGCTTCATCT
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=2210.000000
s ce10.chrX              1577694 205 + 17718866 TCCACAATCTAAATCCCCCAAACACAAATATTTCGCAATTTTTTCGCCGAAAATTTTCGCGCAAGCTATACGGTGATGGTATCTGCATAATTAATAGGGAAAAACaaaatatttttattattattttGAGATATTTTTGGAAGATAATTCTATGCGCAGGTGGTTTTTTGAAATGTATTATGTGTGTAA---------------------TTTAAGACGGAGATCA
s caePb3.Scfld02_133        5315 193 -   344637 TCCGCA---------CTGCATACATAAATATTGGgcaaaaaatt-gc--gaaatatTCGCGC---CGAATCGATGAC--TATCTTCATaattaatgaga------aaaatatttttattagcCT----AGATCCCCTT----GATAA--CCATGTTCCAgctgttttttccaaagttgtTTGTGAATGAAACACTTGAATTAGCCAAATTCTTAGAACGGAGatca
i caePb3.Scfld02_133     C 0 I 2254
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=0.000000
s ce10.chrX              1577899 200 + 17718866 CTTGGTTGACTGGGGTTTTTTGAAAATTCGTAAAACTTGCTGGACTGTTTTGTAACCAACAAAATTATGAATAAATCAAAAAAAAACTGAATTTTTTTTTAAAGTTTTTGGTGCCATTTGCATTATTCCAGCTAGAATTTTTTTGAAAATTTAAATCGTAAAATAATTTCAAACTTTTCCAATTTTACAGAACTTTATTT
e caePb3.Scfld02_133        5508 2254 -   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=2291.000000
s ce10.chrX              1578099 183 + 17718866 TTTTTTAGAAAATTT---ATCAAAATTTGCCAATTTTTTCAGTTATGGAAAATGAACATAAAAACTCAAAAAATAATTTTTTTTCCAACTTCGCAAAACTTTTTAGACTTAGTTTTTTATCTAGCTAGTCTTAT----------AGAAATGTTTAGAAAAGtttttatcaaaatttttatttttatcaatttttat
s caePb3.Scfld02_133      337467 180 +   344637 tttcccaaaaaatctcagattcagcttcatcaaaatttttggtt-tgaacatcggatattcagattttgaaaata-----ttttcgaatt---caaaaatt-----attttttttctcacatttctaGGCTTGTGTGTCACAAAATAACCATTAAgcaaa--ttttctcaaaactttgattttcaaaaaattccat
i caePb3.Scfld02_133     n 2254 I 51
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=0.000000
s ce10.chrX              1578282 65 + 17718866 cattttatgattaaatatttttatcaaaaaatCTGAAAAAAAAATGTTAAAGGTTTTTTTCTAAA
e caePb3.Scfld02_133      337647 51 +   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=362.000000
s ce10.chrX              1578347 179 + 17718866 AATCTGACAAAAAACCAATAGACAATTTTTCTCTCCAATCAAATTTTTTTCGAAAAAAAAATTATAAAAATAGTGA----------AAAACTTTAACCA------TATTTTTCTAAATATCAATTTGTTTTTTGAAAAT------------------------TAGTGTTCCAATTCCAATGAC---------ATCACCAAAAAACCCGTTCAAACTCCACACAATCG
s caePb3.Scfld02_133      337698 209 +   344637 ATTCTGTCTAAAAGCcaa-----gattttt------gatca--ttcgttcagaaaaaaaactcaagaagaGGATAATCGGTTTTGCAAAAGATTGGTCACTAAAATGGTTTGCCAAGgattaaat-attttttgaaagtagaaAAAACCGTTCTGCCATCTAACAGGTTTATATTTCcagtaacttttttccccttgCCAAAAA---CGACCAAACT--ACGAATCCC
i caePb3.Scfld02_133     I 51 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  144416 1674 +   199417 I

a score=18315.000000
s ce10.chrX              1578526 473 + 17718866  
s caeRem4.Crem_Contig196   54019 429 -   199417  
i caeRem4.Crem_Contig196 n 1674 C 0
s caePb3.Scfld02_133      337907 429 +   344637  
i caePb3.Scfld02_133     C 0 n 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=666.000000
s ce10.chrX              1578999 16 + 17718866 AGATA---CTTGAAGAATC
s caeRem4.Crem_Contig196   54448 19 -   199417 AGATAGAGATTGAAAAATC
i caeRem4.Crem_Contig196 C 0 n 0
e caePb3.Scfld02_133      338336  0 +   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=0.000000
s ce10.chrX              1579015 2860 + 17718866  
e caePb3.Scfld02_133      338336    0 +   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832  903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196   54467    0 -   199417 n

a score=294.000000
s ce10.chrX              1581875 115 + 17718866 AAAACTTTTCCA-----CTACAACCACCAATTTCCCAAACATTCTCAAAACTTCATTTCCTCCCACCACTTGCCACATCGAATTCCCATTTTCCCTTCA---------TCTGCCCTTGCACTTGTAGCA
s caePb3.Scfld02_133        7762 118 -   344637 AAATCTTCTCCATCCTGCCAAAACCAATACCTTCACa-------tcccaacttt-tttcatctcCACACTATCCCCTTTAATctcccattttccaaaaaaaaaaagttgccatccattcaattctc---
i caePb3.Scfld02_133     I 2254 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196   54467   0 -   199417 I

a score=8068.000000
s ce10.chrX              1581990  91 + 17718866 TCCCAGAATCCTGCAATCATC-TCCGACAACAAATCGAACGAATTCCC-----GTCACG------CAATTCAATCTTCATATTAAT--------------------------------------CCCCCCTTTT------AAGCTGA
s caeRem4.Crem_Contig196  146090 131 +   199417 TTCCTCAATCCTGCAATCATCTTTTTACAA--------------TCCCGGTC-GTCACGCAATT-CAATTCAATCTTCATTTTAATACATTTCAACATTCCATCATCTAATACTTCCCCCCTCTTCCCACTTTTTGCTACAAACAGG
i caeRem4.Crem_Contig196 I 1674 I 11
s caePb3.Scfld02_133        7880 127 -   344637 tctctcaatcATGCAACAATC-TCATATAA--------------TCCCGGTTGGTCACGCAATTGCAATTCAATCTTCATTTTAATACATTTCAACATTCCATCATCTAATA-----TCCCTCCCCCCTCTTTTCCCTATAAGCTTT
i caePb3.Scfld02_133     C 0 I 25
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                744832 903 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=10707.000000
s ce10.chrX              1582081 35 + 17718866 AGTAAATTGGATTCGATGATGG--ATGAAAAAAACTG---------
s cb4.chrX                745735 35 + 21540570 AGCAAATTGGATTTGATGATGGATATG--AAAACTTG---------
i cb4.chrX               I 903 I 573
s caeRem4.Crem_Contig196  146232 33 +   199417 AGTAAATTGGATTTGATGATGG--atg--aaaagttg---------
i caeRem4.Crem_Contig196 I 11 I 7
s caePb3.Scfld02_133        8032 43 -   344637 AGTAAATTGGATTCGATGATGG--ATg-caaaagttgagaaaagtg
i caePb3.Scfld02_133     I 25 C 0
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=502.000000
s ce10.chrX              1582116  89 + 17718866 -------CGCAATTTGTA---------------CCAAAGTT---------CGACTCGGAGTAGTAGGAAAATGTTGCCAAAATGGTAGTAG--------------ACATTTCTAATTGCTTGCTTCCGCCCGCC-----------------
s caeRem4.Crem_Contig196  146272 129 +   199417 ACGGCAAAgcaatttg-----------------taaaaatttcaactagCTAACTAGTTGAggtaagaaatga-----aaaatattgaaagacGTTGTGAAATGAAATTGGCTAATTGTTAGCTTCCGTTCGTCATCCCGACGGCGTCACC
i caeRem4.Crem_Contig196 I 7 C 0
s caePb3.Scfld02_133        8075 107 -   344637 aCGA-GGGGCAATTTGTAacgacaaaaataaaataaaactttcaa-----taactagt-----taagaaattg-----aaatttttcggagaag-----------ACACATCTAATTGTTAGCTTCCGTTCGTC-----------------
i caePb3.Scfld02_133     C 0 I 1695
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=2174.000000
s ce10.chrX              1582205 174 + 17718866 TTGTCATTCACCTTCCGTGACGTGA----------------------------ATATTACGA-------------TGTGAGGAAAAAGTTGACAGGCCGGCGGGGGC----------------AGGAAGTAG-ATAGAACACGTATTGTTGTCAGAAGAAGCCGTTGGCGAGGAGGTAGATATGGATATGGAGAGGGGGACACGGCGGATATTCTTGTTCTTTACGTAATCC
s caeRem4.Crem_Contig196  146401 217 +   199417 TTGTCAACCTCCC-CCACGACGTCATCTCACAGCAAATAAATGTCACGCTTCAATATTAcgacttctttttctatttttcggaaaagagGGGGAGGGAGGAGGTGACCAAAACCAAACACTGAAGGCAGTCGTATCGAACACGTATTGTATTGTTGGCAAGCCGTATGGAGGGAGGTAGATATAGATAT-------------CTAAGTCTATTCTTGTT-TTTACGTAATCC
i caeRem4.Crem_Contig196 C 0 I 538
e caePb3.Scfld02_133        8182 1695 -   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=0.000000
s ce10.chrX              1582379 1814 + 17718866  
e caePb3.Scfld02_133        8182 1695 -   344637 I
e caeJap4.Scaffold16506    93727 1739 +   115485 I
e cb4.chrX                745770  573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  146618  538 +   199417 I

a score=15433.000000
s ce10.chrX              1584193 58 + 17718866 AGATAAGATCAGTCGCGTATCACGTTTATTCGATTAGGTCATTTCTTTT---TCCATT-CGA
s caeRem4.Crem_Contig196  147156 62 +   199417 AGATAAGATCAATCGCGTATCACGTTTATTCGATTAGGTCATTTCCATTCagtcatttccat
i caeRem4.Crem_Contig196 I 538 C 0
s caePb3.Scfld02_133        9877 61 -   344637 AGATAAGATCAATCGCGTATCACGTTTATTCGATTAGGtcatttcacttcactcattt-cat
i caePb3.Scfld02_133     I 1695 C 0
s caeJap4.Scaffold16506    95466 56 +   115485 AGATAAGATAAATCAGGTATCACTTTTATTCAAttaccctttttttttctacttga------
i caeJap4.Scaffold16506  I 1739 I 495
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=1169.000000
s ce10.chrX              1584251 18 + 17718866 TTTCTACTCGATTCATTC
s caeRem4.Crem_Contig196  147218 18 +   199417 ttttctcccttttcattt
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133        9938 14 -   344637 ttttcgc----ttcatcc
i caePb3.Scfld02_133     C 0 I 150
e caeJap4.Scaffold16506    95522 495 +   115485 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=91.000000
s ce10.chrX              1584269 1 + 17718866 A
s caeRem4.Crem_Contig196  147236 1 +   199417 a
i caeRem4.Crem_Contig196 C 0 I 143
e caePb3.Scfld02_133        9952 150 -   344637 I
e caeJap4.Scaffold16506    95522 495 +   115485 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I

a score=0.000000
s ce10.chrX              1584270 574 + 17718866  
e caePb3.Scfld02_133        9952 150 -   344637 I
e caeJap4.Scaffold16506    95522 495 +   115485 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  147237 143 +   199417 I

a score=313.000000
s ce10.chrX              1584844 15 + 17718866 TTAAACTTTAAAAAC
s caeJap4.Scaffold16506    96017 13 +   115485 TTTACCTTTAAAA--
i caeJap4.Scaffold16506  I 495 C 0
e caePb3.Scfld02_133        9952 150 -   344637 I
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  147237 143 +   199417 I

a score=0.000000
s ce10.chrX              1584859 1 + 17718866 T
e caePb3.Scfld02_133        9952 150 -   344637 I
e caeJap4.Scaffold16506    96030 0 +   115485 C
e cb4.chrX                745770 573 + 21540570 I
e caeSp111.Scaffold514    124533 1828 +   141934 I
e caeRem4.Crem_Contig196  147237 143 +   199417 I

a score=109442.000000
s ce10.chrX              1584860 110 + 17718866 TTTCAGGAGTGTCCCGGCGAGTTCTCAGACTTTGCATGCACCAAAAAGAACCAATGGGTTGGTGGCATCGACTTCATCGATCATCCTAGACAACCGTAAGTTTTTTTTTT
s cb4.chrX                746343 107 + 21540570 ttgcaGGAATGCCCTGGTCATTTCTCAGAATTTGCGtgcaccaaaaaaaatcaatgggTTGGAGGAATAGATTTCATTGACCATCCAAGACAACCGTaag---tttttta
i cb4.chrX               I 573 I 6
s caeRem4.Crem_Contig196  147380 108 +   199417 tttcaggaaTGCCCTGGCCAATTCTCGGACTTTGCGTGTACTAAGAAAAACCAATGGGTTGGAGGAATCGACTTCATTGATCATCCAAGACAACCGTAAG--ACTGATTA
i caeRem4.Crem_Contig196 I 143 I 10
s caeSp111.Scaffold514    126361 110 +   141934 TTTCAGGATTGCCCTGGTCAGTTCTCGGATTTCGCGTgtaccaaaaaaaaccagtGGGTTGGTGGAATTGACTTCATCGATCATCCAAGACAACCGTAAGATATTTATCT
i caeSp111.Scaffold514   I 1828 I 179
s caePb3.Scfld02_133       10102 110 -   344637 tttcaggaatgccCTGGCCAATTCTCGGACTTTGCGTGTACCAAGAAAAACCAGTGGGTCGGCGGAATCGACTTCATCGATCATCCAAGACAACCGTAAGAGATCTTTGA
i caePb3.Scfld02_133     I 150 C 0
s caeJap4.Scaffold16506    96030 109 +   115485 -TTTAGGAATGCCCCGGCCAATTCTCGGACTTTGCTTGCACTAAGAAAAACCAATGGGTTGGTGGAATCGACTTTATTGACCACCCAAGACAACCgtaagtctttttttt
i caeJap4.Scaffold16506  C 0 C 0

a score=546.000000
s ce10.chrX              1584970 1 + 17718866 T
s cb4.chrX                746456 1 + 21540570 t
i cb4.chrX               I 6 C 0
s caeRem4.Crem_Contig196  147498 1 +   199417 T
i caeRem4.Crem_Contig196 I 10 C 0
s caeJap4.Scaffold16506    96139 1 +   115485 t
i caeJap4.Scaffold16506  C 0 I 24
e caePb3.Scfld02_133       10212 0 -   344637 C
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=-11509.000000
s ce10.chrX              1584971 64 + 17718866 GAAATTC--------------------AACGTGATGGACTAATTAATTTGGAGAGGGAAACGTATCAAT-----GATCAAGAT--C---------------------AAAAT----------
s cb4.chrX                746457 43 + 21540570 gaaaa-------------------------------------------ctgacagaaaaaacaatacat-----gataaaaacttc---------------------aaaat----------
i cb4.chrX               C 0 I 71
s caeRem4.Crem_Contig196  147499 99 +   199417 GAAAGTGATATGTTCAGACAGATCAAAAACATT-CCGACAGATt----ctgagagagaaaaaaaacagt-----gacaAATGTGTCTGGAGTGATTGATTG---ACAGGAAT----------
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       10212 93 -   344637 ---------------------------GACATT-TCCGCTCATTGCTAATGAGATTGAAAAGTGATAATTGGAGGGTGAAAGTGAT-AGGGGGACAGATCgtgatcaaaaatattttcgttC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    96140 24 +   115485 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=-3762.000000
s ce10.chrX              1585035 52 + 17718866 ------------------GATGATTATGTCGTGTTCGGATGACATGAGACAAAAAAA--------------TCGGTTGATATGT----
s caeRem4.Crem_Contig196  147598 84 +   199417 AAGATTGAAGGTGTAAAAAGTTCCCTCGAATTACTTAT-TGAACTGA---AAAGGGGGTCTTCACATGCAAAAACgtattttatttgt
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       10305 51 -   344637 ------------------TATgcttttgacgtttctgg-taAAGTGAGGGAAAAGGG--------------AAAGGTGATATAT----
i caePb3.Scfld02_133     C 0 I 1354
e caeJap4.Scaffold16506    96140 24 +   115485 I
e cb4.chrX                746500 71 + 21540570 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=351.000000
s ce10.chrX              1585087 32 + 17718866 ATATGACAAATGTGTCTGTGGAAT----------AGAATTTA
s caeRem4.Crem_Contig196  147682 42 +   199417 ttatgATAAATGTGATAACGGAGTGGTTCAAATAAGGAGCAA
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       10356 1354 -   344637 I
e caeJap4.Scaffold16506    96140 24 +   115485 I
e cb4.chrX                746500 71 + 21540570 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=-721.000000
s ce10.chrX              1585119 27 + 17718866 TAATTATAGACTAGAGTTAGAATCGTG---------------
s cb4.chrX                746571 27 + 21540570 CaattatagaaaaaagatGGATTTGAA---------------
i cb4.chrX               I 71 C 0
s caeRem4.Crem_Contig196  147724 39 +   199417 ---ATATTGTGAACAGAATGAGTTGTATTATACAGAATTGtg
i caeRem4.Crem_Contig196 C 0 I 270
e caePb3.Scfld02_133       10356 1354 -   344637 I
e caeJap4.Scaffold16506    96140 24 +   115485 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=-4106.000000
s ce10.chrX              1585146 209 + 17718866 AACCTAAGCCTGAAATTTTGACTGAgcttgggcctgtgtttgaattttggcctaagcggtctaagtgggctcgtacatttttgccttggcttaggcttttataaacttaggcttctacaatccaaggcttaggctactatagttcaggacttaggctttcatggtccaaggctttggacttaagcttaaactttcataatcaaaggctt
s cb4.chrX                746598  74 + 21540570 AATGT--------------------------------------------------------------GGTTCGTTGTTTTTCAATCAggttgaaactcaaaaaaa-------------------------------------ttctgaac----------acgATACAAAACt--------------acattttctt------------
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_133       10356 1354 -   344637 I
e caeJap4.Scaffold16506    96140  24 +   115485 I
e caeSp111.Scaffold514    126471 179 +   141934 I
e caeRem4.Crem_Contig196  147763 270 +   199417 I

a score=-5658.000000
s ce10.chrX              1585355  66 + 17718866 aggcttTAAATTTTTCAGGTGAGAGGTACACATT---------GTTCCCATAAACCTATTTTAC-------------------------------------------------------------------------------TATATAAATCC
s cb4.chrX                746672  33 + 21540570 ---------------------------gtttttt---------tttcacattagcataaatttg-------------------------------------------------------------------------------------aattc
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  148033 154 +   199417 AGACATTCAATATTTTGAGGGACGGACACTTTTTGAGTATGACTTTCccaaaaacataatttttataaactaCTACGACGATTTCTAATAATACAAGCCAATGTACAACCTATCATTAGTAATTAGTTCACCACTTCCTAAATCACATCAACCC
i caeRem4.Crem_Contig196 I 270 C 0
e caePb3.Scfld02_133       10356 1354 -   344637 I
e caeJap4.Scaffold16506    96140  24 +   115485 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=-5883.000000
s ce10.chrX              1585421 15 + 17718866 TAAA--------------------ATTTCCTCC------TA
s cb4.chrX                746705  4 + 21540570 tgaa-------------------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  148187 39 +   199417 TGaaaaaaaCCACTAtcatatttcactttttccattccA--
i caeRem4.Crem_Contig196 C 0 I 6
s caePb3.Scfld02_133       11710 15 -   344637 ------------------TAATGTGCTTTCTCA--------
i caePb3.Scfld02_133     I 1354 C 0
e caeJap4.Scaffold16506    96140 24 +   115485 I
e caeSp111.Scaffold514    126471 179 +   141934 I

a score=86598.000000
s ce10.chrX              1585436 82 + 17718866 TTCCAGGCTGGTCCTCCAATGCTGCACATTCGAAGGGCTTCGCTTCTCGCAGGATGTCGGTGTCACCACCATCTCAGCAGGT
s cb4.chrX                746709 79 + 21540570 ---cAGATTGGTCCTTCAATGCTGCACATTTGAAGGTTTGCGCTTTTCTCAGGACGTCGGTGTCACCACAATTTCATCTGGT
i cb4.chrX               C 0 I 213
s caeRem4.Crem_Contig196  148232 82 +   199417 TTGCAGATTGATCCTTCAATGCTGCACATTTGAAGGACTCCGCTTCTCACAGGATGTCGGTGTCACCACCATCTCAGCAGGT
i caeRem4.Crem_Contig196 I 6 C 0
s caeSp111.Scaffold514    126650 82 +   141934 tttcagattagtTCTTCAATGTTGCACTTTTGAAGGACTTCGCTTTTCACAGGATGTCGGTGTGACTACGATTTCTGCAGGT
i caeSp111.Scaffold514   I 179 C 0
s caePb3.Scfld02_133       11725 82 -   344637 TTACAGATTGGTCCTTCAATGCTGCACGTTTGAAGGACTCCGATTTTCACAGGATGTCGGTGTCACTACCATCTCAGCAggt
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    96164 82 +   115485 TTTCAGGTTGATTCTTCAATGCTGCACATTTGAAGGGCTCCGGTTCTCGCAGGACGTCGGTGTCACCACGATTTCAGCTGGT
i caeJap4.Scaffold16506  I 24 I 201

a score=-3153.000000
s ce10.chrX              1585518 19 + 17718866 ------GATTTCCGTTTGCA-------AATTT
s caeRem4.Crem_Contig196  148314 32 +   199417 AATTCCTAATTATTTCCGTGTTCTGACCCTTT
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    126732 11 +   141934 ------GAATCACACTT---------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       11807 19 -   344637 ------gatttatttttttg-------cattt
i caePb3.Scfld02_133     C 0 I 155
e caeJap4.Scaffold16506    96246 201 +   115485 I
e cb4.chrX                746788 213 + 21540570 I

a score=1688.000000
s ce10.chrX              1585537 23 + 17718866 CCACATAAAACTAGTGACAAATT
s caeRem4.Crem_Contig196  148346 23 +   199417 TACCAGCAAACTAATGATAAATT
i caeRem4.Crem_Contig196 C 0 I 37
s caeSp111.Scaffold514    126743 22 +   141934 TTATACAGAACTAA-GATGAACT
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133       11826 155 -   344637 I
e caeJap4.Scaffold16506    96246 201 +   115485 I
e cb4.chrX                746788 213 + 21540570 I

a score=169.000000
s ce10.chrX              1585560 3 + 17718866 GGG
s caeSp111.Scaffold514    126765 3 +   141934 GAG
i caeSp111.Scaffold514   C 0 I 308
e caePb3.Scfld02_133       11826 155 -   344637 I
e caeJap4.Scaffold16506    96246 201 +   115485 I
e cb4.chrX                746788 213 + 21540570 I
e caeRem4.Crem_Contig196  148369 37 +   199417 I

a score=0.000000
s ce10.chrX              1585563 841 + 17718866  
e caePb3.Scfld02_133       11826 155 -   344637 I
e caeJap4.Scaffold16506    96246 201 +   115485 I
e cb4.chrX                746788 213 + 21540570 I
e caeSp111.Scaffold514    126768 308 +   141934 I
e caeRem4.Crem_Contig196  148369  37 +   199417 I

a score=961.000000
s ce10.chrX              1586404 49 + 17718866 TTTATAACTAGTATTGCAGTAGAAATGATTGTAGAGTACTGTAGATTTC
s caeRem4.Crem_Contig196  148406 38 +   199417 tttaaaatctgGCTTGCGGTATAAATCATTG-----------AGAGTTC
i caeRem4.Crem_Contig196 I 37 C 0
e caePb3.Scfld02_133       11826 155 -   344637 I
e caeJap4.Scaffold16506    96246 201 +   115485 I
e cb4.chrX                746788 213 + 21540570 I
e caeSp111.Scaffold514    126768 308 +   141934 I

a score=-1004.000000
s ce10.chrX              1586453 14 + 17718866 CACATGAACTTTTC
s caeRem4.Crem_Contig196  148444  1 +   199417 C-------------
i caeRem4.Crem_Contig196 C 0 C 0
s caeJap4.Scaffold16506    96447 14 +   115485 catataaatttgat
i caeJap4.Scaffold16506  I 201 C 0
e caePb3.Scfld02_133       11826 155 -   344637 I
e cb4.chrX                746788 213 + 21540570 I
e caeSp111.Scaffold514    126768 308 +   141934 I

a score=-2464.000000
s ce10.chrX              1586467 27 + 17718866 -TTTTCATTTTTCAATGCAAAATCCAAA-
s cb4.chrX                747001 21 + 21540570 -tttttgtttttc------atacACGAA-
i cb4.chrX               I 213 C 0
s caeRem4.Crem_Contig196  148445 18 +   199417 ----TTGACtttt------gaatataat-
i caeRem4.Crem_Contig196 C 0 C 0
s caeJap4.Scaffold16506    96461 28 +   115485 tttcatatttttcatggc-ttgtaaaaaa
i caeJap4.Scaffold16506  C 0 C 0
e caePb3.Scfld02_133       11826 155 -   344637 I
e caeSp111.Scaffold514    126768 308 +   141934 I

a score=910.000000
s ce10.chrX              1586494 1 + 17718866 T
s cb4.chrX                747022 1 + 21540570 T
i cb4.chrX               C 0 I 5
s caeRem4.Crem_Contig196  148463 1 +   199417 t
i caeRem4.Crem_Contig196 C 0 I 5
s caePb3.Scfld02_133       11981 1 -   344637 T
i caePb3.Scfld02_133     I 155 C 0
s caeJap4.Scaffold16506    96489 1 +   115485 t
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    126768 308 +   141934 I

a score=105390.000000
s ce10.chrX              1586495 118 + 17718866 TTTTCCAGGAGAAGCTGTAACTGGTGGAGAAGTAGTCCGTGACAATCGTCAAATCTCCTTCGACGTCATCGCCAACGTGCGGAAGCTTGTGGACCCAGATGATCCGAAACGGTAATT---T--
s cb4.chrX                747028 111 + 21540570 T-----AGGAGAAGCAGTAACTGGTGGCGAAGTTGTTCGTGACGGTCGTCAAATTTCGTTTGATGTTATCGCAAACGCTAGGAAACTGGTGGATCCGGATGATCCCAAACGGTaa-----c--
i cb4.chrX               I 5 C 0
s caeRem4.Crem_Contig196  148469 116 +   199417 ttttgcaggAGAAGCCGTGACTGGTGGAGAAGTCGTTCGTGAGGGTCGTCAAATTTCATTTGATGTTATCGCCAACGTGAGGAAACTAGTGGACCCAGATGATCCGAAACGgtaa-----t--
i caeRem4.Crem_Contig196 I 5 C 0
s caeSp111.Scaffold514    127076 116 +   141934 TTATTCAGGAGAAGCAGTGACTGGTGGCGAAGTCGTGCGAGAAGGTCGTCAAATTTCGTTTGATGTCATTGCAAACGTGAGAAAATTAGTAGATCCTGATGATCCAAAGCGgtaa-----a--
i caeSp111.Scaffold514   I 308 C 0
s caePb3.Scfld02_133       11982 121 -   344637 TATTCCAGGAGAAGCGGTAACTGGTGGAGAAGTCGTTCGTGAGGGTCGTCAAATTTCATTCGATGTCATTGCGAACGTGAGAAAACTAGTGGACCCAGATGATCCAAAACGGTAattttcc--
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    96490 118 +   115485 tatttcaggcGAAGCCGTAACCGGTGGGGAAGTGATTCGTGAAGGCCGCCAGATTTCGTTTGATGTTATTGCGAATGTGAGGAAATTGGTGGACCCGGATGATCCGAAAAGGTGC-----ttt
i caeJap4.Scaffold16506  C 0 I 623

a score=876.000000
s ce10.chrX              1586613  9 + 17718866 CCGATTTTT--
s cb4.chrX                747139 11 + 21540570 tttatattttt
i cb4.chrX               C 0 I 825
s caeRem4.Crem_Contig196  148585 11 +   199417 tttatcttttt
i caeRem4.Crem_Contig196 C 0 I 2
s caeSp111.Scaffold514    127192  9 +   141934 tcaattttt--
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       12103  9 -   344637 tcacttttt--
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    96608 623 +   115485 I

a score=-33.000000
s ce10.chrX              1586622 6 + 17718866 --TATCAC
s caeRem4.Crem_Contig196  148598 6 +   199417 catttc--
i caeRem4.Crem_Contig196 I 2 C 0
s caeSp111.Scaffold514    127201 6 +   141934 --tttcaa
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       12112 6 -   344637 --tatcac
i caePb3.Scfld02_133     C 0 I 2398
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I

a score=-5170.000000
s ce10.chrX              1586628  31 + 17718866 ----------CATTTTACA----------------------------------------------AAAGCTGATAACAA-------------------------TTTTACGG-------------
s caeRem4.Crem_Contig196  148604 124 +   199417 -cgccGCCCGCTTTCTGCAGACATGAAGACAGAAAAAGATAAGAATTGAGGAGGGAGAGGAAAGGAAAGCTGATAAAAATTTTACGCTTCTTTAGACACAATTTTATTAGGCCTCGAGGAAAAAG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    127207  38 +   141934 aattcgttTCCTTTCTACAGCCA------------------------------------------AAAACTG--------------------------------TCTTAggg-------------
i caeSp111.Scaffold514   C 0 I 516
e caePb3.Scfld02_133       12118 2398 -   344637 I
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I

a score=-2187.000000
s ce10.chrX              1586659 408 + 17718866  
s caeRem4.Crem_Contig196  148728 589 +   199417  
i caeRem4.Crem_Contig196 C 0 I 199
e caePb3.Scfld02_133       12118 2398 -   344637 I
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I
e caeSp111.Scaffold514    127245 516 +   141934 I

a score=0.000000
s ce10.chrX              1587067 164 + 17718866 TTTTGGGACCTAGGATCGTAGTCGATGCACTATGTCTGACTTCCGATTGCAAAAAAAAATCGATGCACCATGTCCAAAATAATTTTTTATACAGTTAAAACTACTATCTTCTAAAACTAAAAAGTTCAAAAGATACAAATCTTTTCGAGAAAAAAAGGGAATCG
e caePb3.Scfld02_133       12118 2398 -   344637 I
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I
e caeSp111.Scaffold514    127245 516 +   141934 I
e caeRem4.Crem_Contig196  149317 199 +   199417 I

a score=966.000000
s ce10.chrX              1587231 176 + 17718866 GCTGCTTTTGG--------AAGATCTTAGTAGATAAAACGGCTGGATTTTCTGTGGGA------AGTTTTGTAAAAGTGAAAGA--GTAATTAGTGTCAACTTGGTTAGATTCAAAGTTCAGATTAGAAGTTATATGGCTTTTGAGGAAAAAGAAAAGGAAAGTGAGAAAAGCGTTAAATGCGTCAAAGTAA
s caeRem4.Crem_Contig196  149516 187 +   199417 GTTGTTTTTGATATCAAGTCAAGCCGTCATAGAGAAATAAACTTGATCTTCCGAGtgatcaaatatttttttgagagggaaatatggaatttgggattgaataatttttttttagaattccg----GGTGTTTAGTGAATTGGAAGGGAAATGATGAATAGAGCAAG-AAATCATAAACCACCAGAAAATAA
i caeRem4.Crem_Contig196 I 199 I 147
e caePb3.Scfld02_133       12118 2398 -   344637 I
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I
e caeSp111.Scaffold514    127245 516 +   141934 I

a score=0.000000
s ce10.chrX              1587407 86 + 17718866 ATCGACCACACTTTTTGCTCATTTTCATGATCGAAAAAAAATGGAGAAAAACGAGCAGAAAGTGCCATAGGGTGACGATAAACTTC
e caePb3.Scfld02_133       12118 2398 -   344637 I
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I
e caeSp111.Scaffold514    127245 516 +   141934 I
e caeRem4.Crem_Contig196  149703 147 +   199417 I

a score=585.000000
s ce10.chrX              1587493 40 + 17718866 CCAAAAACATAAAACTTCCAAAAATATAGAGACTAAATGC
s caePb3.Scfld02_133       14516 40 -   344637 CCGAAAATCAAGAAGGCTCAAATTTaaagaattttaattt
i caePb3.Scfld02_133     I 2398 C 0
e caeJap4.Scaffold16506    96608 623 +   115485 I
e cb4.chrX                747150 825 + 21540570 I
e caeSp111.Scaffold514    127245 516 +   141934 I
e caeRem4.Crem_Contig196  149703 147 +   199417 I

a score=886.000000
s ce10.chrX              1587533 5 + 17718866 TCAAA
s cb4.chrX                747975 5 + 21540570 TCAAA
i cb4.chrX               I 825 C 0
s caePb3.Scfld02_133       14556 5 -   344637 ttgaa
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    96608 623 +   115485 I
e caeSp111.Scaffold514    127245 516 +   141934 I
e caeRem4.Crem_Contig196  149703 147 +   199417 I

a score=906.000000
s ce10.chrX              1587538 3 + 17718866 AAA
s cb4.chrX                747980 3 + 21540570 AGg
i cb4.chrX               C 0 I 4
s caePb3.Scfld02_133       14561 3 -   344637 aaa
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    97231 3 +   115485 aaa
i caeJap4.Scaffold16506  I 623 C 0
e caeSp111.Scaffold514    127245 516 +   141934 I
e caeRem4.Crem_Contig196  149703 147 +   199417 I

a score=-1238.000000
s ce10.chrX              1587541 2 + 17718866 TT-
s cb4.chrX                747987 2 + 21540570 tt-
i cb4.chrX               I 4 C 0
s caeRem4.Crem_Contig196  149850 2 +   199417 ct-
i caeRem4.Crem_Contig196 I 147 C 0
s caePb3.Scfld02_133       14564 2 -   344637 tt-
i caePb3.Scfld02_133     C 0 I 19
s caeJap4.Scaffold16506    97234 2 +   115485 -CG
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    127245 516 +   141934 I

a score=69656.000000
s ce10.chrX              1587543 98 + 17718866 TTACAGTACCTACTTCGAAGTCACCGTCCGACGTATGAACTGTCTGCCAGACCCGCCAGAGTTTGAAGTTGCCTGTGAG-TTTTTTTTTTTGGAATTTT
s cb4.chrX                747989 95 + 21540570 tttcagaacttacTATGAAGTCACCGTCCGTCGCATGAATTGCCTTCCCGACCCGCCCGAGTTCGAAGTTGCATGTAAG----TCATTTGGTCAAATTG
i cb4.chrX               C 0 I 2
s caeRem4.Crem_Contig196  149852 98 +   199417 tttcagaacCTATTATGAAGTTACCGTACGCCGTATGAACTGTCTCCCGGACCCACCAGAGTTTGAAGTAGCATGTAAG-CTCCCAGATTCTTAGATta
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    127761 95 +   141934 tTGCAGAACATACTTTGAAGTCACAGTACGTCGTATGAATTGTCTTCCGGATCCTCCTGAATTTGAAGTAGAATGTGAG----CTAGTGCCATAGTTTC
i caeSp111.Scaffold514   I 516 C 0
s caePb3.Scfld02_133       14585 97 -   344637 ttccagaacctaCTTCGAAGTCACAGTACGTCGTATGAACTGCCTACCGGACCCACCAGAGTTCGAAGTTgcatgtaag--ttttttttccccggtttt
i caePb3.Scfld02_133     I 19 I 295
s caeJap4.Scaffold16506    97236 98 +   115485 TTTCAGAACTTACTACGAAGTCACCGTTCGTCGCATGAACTGCCTTCCAGACCCACCAGAGTTTGATGTCGCATGTAAGGATcacactttcttttttt-
i caeJap4.Scaffold16506  C 0 C 0

a score=-12339.000000
s ce10.chrX              1587641 52 + 17718866 GCATTAAAATTATATTGATTGA--AATTTGAATTGCTCGATGACCAAAAAAAAA
s cb4.chrX                748086 22 + 21540570 TCACTCTAATTTTCCTTTCAAA--------------------------------
i cb4.chrX               I 2 C 0
s caeRem4.Crem_Contig196  149950 20 +   199417 ----tttacttcttttttctgatt------------------------------
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    127856 19 +   141934 TTATTTGACGTATAGTTGA-----------------------------------
i caeSp111.Scaffold514   C 0 C 0
s caeJap4.Scaffold16506    97334 14 +   115485 -taatcaaaaagcAA---------------------------------------
i caeJap4.Scaffold16506  C 0 I 8
e caePb3.Scfld02_133       14682 295 -   344637 I

a score=137175.000000
s ce10.chrX              1587693 173 + 17718866 TTCTCAGACGACGACGATGTAGAGCCAGAAATTCAACGGGTGCTCGGAAACGCGACAAATTCCGCAATGAACATGGGACATGAAAACCATCCACATATGGCACAAGAAAAAAAAGTTTCCAAAAATAGGCCGTACAAAAGGAAGCCAAAGACCTCATCGACTAATAAGTCAGT
s cb4.chrX                748108 169 + 21540570 ----CAGATGACGACGATGTTGAGTCGGAAATTCGACGAGTGTTGGGAAACGCCACAAACTCTGCCATGAACATTGGGCATGACAATCACCCACACATTGCACGAGAGAAAAAGGTTCCAATAAATAGACCTTACAagagaaaaccaaaaacttcCTCGACGCACAAGTGAGT
i cb4.chrX               C 0 I 36
s caeRem4.Crem_Contig196  149970 170 +   199417 ---tcagatgaCGATGACGTGGAACCAGAGATCAGAAGAGTGTTGGGTAACGCTACTAACTCTGCCATGAACATTGGGCATGAGAATCATCCACATATTACCAGAGAGAAGAAGGTGTCTAAAGATAGACCGTATAAGAGAAAGCCAAAGACATCGTCCACTcataagtgagt
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    127875 172 +   141934 TTTTAAGATGATGACGAAGTGGAATCAGAAATTCGTCGAGTTCTCGGAAACGCTACAAACTCTGCAATGACCTTTGGGCACAATAATAATGAACACAAAccccaaga-aaaaaagtatcaaAGAACAGACCAtataaaagaaaaccaaaGACTTCGTCCACCAACAAGTGAGt
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       14977 173 -   344637 tttttagacGACGACGATGTTGAATCAGAAATCAGAAGAGTTCTTGGAAACGCCACCAACTCCGCCATGAACATTGGACACGACAACCATCCACATATCACCCACGAGAAGAAGGTTCCAAAGGATAGGCCATACAAAAGGAAACCTAAGACGTCGTCTACCAACAAGTAAGT
i caePb3.Scfld02_133     I 295 C 0
s caeJap4.Scaffold16506    97356 169 +   115485 -TTCTAGACGATGACGACGTGGAATCGGAAATTCAACGCGTGCTTGGAAATGCTACAAATTCTGCCATGAACTTCGGGCATGAAGACCATCCACATATGActcaagagaaaaaaatttcaaag---agACCATACAAAAGAAAACCGAAAACGTCTTCCACGCATAAGTAAGC
i caeJap4.Scaffold16506  I 8 C 0

a score=-469.000000
s ce10.chrX              1587866 1 + 17718866 T
s caeRem4.Crem_Contig196  150140 1 +   199417 t
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    128047 1 +   141934 g
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       15150 1 -   344637 A
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    97525 1 +   115485 T
i caeJap4.Scaffold16506  C 0 I 77
e cb4.chrX                748277 36 + 21540570 I

a score=339.000000
s ce10.chrX              1587867 6 + 17718866 TTGGTT
s caeRem4.Crem_Contig196  150141 6 +   199417 ttcatt
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    128048 6 +   141934 tttgtt
i caeSp111.Scaffold514   C 0 I 26
s caePb3.Scfld02_133       15151 6 -   344637 CTAAAC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97526 77 +   115485 I
e cb4.chrX                748277 36 + 21540570 I

a score=-132.000000
s ce10.chrX              1587873 4 + 17718866 GTTT-
s caeRem4.Crem_Contig196  150147 4 +   199417 -tttt
i caeRem4.Crem_Contig196 C 0 I 20
s caePb3.Scfld02_133       15157 4 -   344637 ATTT-
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97526 77 +   115485 I
e cb4.chrX                748277 36 + 21540570 I
e caeSp111.Scaffold514    128054 26 +   141934 I

a score=-4818.000000
s ce10.chrX              1587877 423 + 17718866 -----------------AAGATAATTGTGCAGCCGACGGTGTGTGGGCAATGTTTTTTTTCAAATATTCTGAAAGCTGAAAATGTAAAATTGTCGGAGTAGACAAACATTGTT----GAAGCtttcaaaattcaaaattttcaaaagtttcaaaattttcaaaaatttgaaattgttaaactaaaaacatttttttaagtt-tttaaatttaaaaattgttttttgaataattaaatttttttaatC--ACTCCAAAGTTGTTTCCAGATTCATAAATAAGCTAAAATTAATTTTTTCTGAAGTAAGGTATTTTGATGTTCCGTTCTAGAAAAAACTAAAAAGTGGGCAAAAATTGGGCCATTAAAAAAAAATCAAAACTTACAATTTTTTAAATACGTATAAAAAGCAAGACTTTGCGCCCACCTCTATCATAGCTCAGAATTAAA
s caePb3.Scfld02_133       15161 225 -   344637 TGAggattgatcaaaaaaaaataatt------tcagtgtTGTCTCGG---TGTTT-------------------gctgaa--------------ggaggaggaggacacgGCGAGGAGAAGAAACCCAGACACGAGCCATTCA-----------------------TTGGAAGTTTTGGAGCAACTATTTTTGAGTGAGTTGTTTTCCTCGAAAAGTTGTTATTAGAAGATTGAAATTTGTTTAGtctaacttca--------------------------------------ttttttgaaat-------------------tttttgaagaaa----------------------------------------------acaatttaataa------------------------------------------------------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97526  77 +   115485 I
e cb4.chrX                748277  36 + 21540570 I
e caeSp111.Scaffold514    128054  26 +   141934 I
e caeRem4.Crem_Contig196  150151  20 +   199417 I

a score=6512.000000
s ce10.chrX              1588300 31 + 17718866 TTCCAGCGTTGTCTCCCCATTTGTTGA---ACAC
s cb4.chrX                748313 31 + 21540570 TTTCAGTGTTGTTTCGCCATTTGTGGA---TGGA
i cb4.chrX               I 36 C 0
s caeRem4.Crem_Contig196  150171 31 +   199417 tttcagcGTGGTATCACCTTTCGCCGA---CGGT
i caeRem4.Crem_Contig196 I 20 C 0
s caeSp111.Scaffold514    128080 34 +   141934 TTCTAGTGTTGTATCGCTATTTGCCGAAGGAGGA
i caeSp111.Scaffold514   I 26 C 0
e caePb3.Scfld02_133       15386  0 -   344637 C
e caeJap4.Scaffold16506    97526 77 +   115485 I

a score=56343.000000
s ce10.chrX              1588331 283 + 17718866 CAT---GAAGGAGAAAAGAA---GAGCCGTGAGCCGTTTATCGGAAGTTTCGGAGCAACCATCTTCAAGT----------GAGTCCTCCAATTATT------TATTTTTTCTATTCAAGCCTCCAACCTCTTCCAGCCCAACCGCCGAAAATAAC--AAAGAGCAAGAAACGCCTCGAG-------------------------CTCCACCGAGGCGAGTCCATCAGCCATATACTAGAAGAATTTTAACACCGAAGCCAAGAATTGTGCAC------ACAACTACTGTAATGCCAAC---------TACACACGCACCTCCAGTGCAGGTTCAGGTATG-ATTTTTT-------
s cb4.chrX                748344 281 + 21540570 CAT---GATGGTGAGAAGAAACCAAGATCGGAGCCGTTTATCGGAAGTTTTGGAGCTACAATCTTCGagt----------gagtcttttt----ttttggt-tatcaTTTTTAATTATATATC--------TCTAGCCCAACAGCTGAGCATAAC--GCA-CAAGAGGAATCTGCAAAATCTG---------------CAACGCCCCCGCCAAAGCGAGAACATGTTCCTTATACAAGAAGAATATTAACTCCCAAACCGAGAATAATTCCA------ACAACAACTCAAACACCGAC---------AACAATTGCTCCACCAGTTCAAGTTCAAGTGAG---------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  150202 310 +   199417 CAC---GATGGCGAGAAGAAAGGAAGGTCGGAGCCATTTATTGGAAGTTTTGGAGCTACTATTTTCAAGT----------GAGTATTGTTTATATTTTACTGtattatttctgttttaacACCCA--CAAATTTAGCCCAACCGCTGAGAACAACAAGCACCACGAAATACCAGAGGAACCTG---------------CAACACCACCACCAAGACGTGACCACGCTCCTTATACCAGAAGGATTTTGACACCAAAGCCAAGATACGTGCAACCAAAGACAACTACACCAGCTCCAACGACTCAAGAAACTATTGCACCACCAGTACATGTCCAGGTAAA---------------
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    128114 276 +   141934 CAT---GATACTGATAAGAAACCAAGACACGAACCATTCATTGGAAGTTTCGGAGCAACTATTTTCGAGT----------TAGTTTTAATAGAAGCAT----TGACTTCAACCACTGTATTCT--------TTAAGTCCAACagcagaaaacaaa--aaa-catggGAAGAATTCTGAGTCTG---------------CTACTTCTCATCCAAACATCAATCATAATCAATACACCAGAAGAATTTTGACACCGAAGCCAAGGA---TTTCTTCAACACCCGCT---------CCAAC---------CACAATCGCACCTCCTGTTCAAATTCAAGTAAG---------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       15386 199 -   344637 ----------------------------------------tagaaaatttc----------------------------------------------------------------------------------cagccccACTGCCGAAGCCAAA--AAA-CACGAAGAACATGTTGAGTCCG---------------CCACTCCACCACCAAGACGAGAACGTCAACCATATATTAGAAGGATAGTGACACCGAGGCCAAGAAGAGTAGTACCAACGACCACTACTGAAGCACCAAC---------CACACATGCACCACCAGTTCAGGTTCAGGTATGAAAACTGG-------
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506    97603 312 +   115485 CATGAAGATGGAGAAAAGAAGGGAAGATCAGAGCCGTTTATTGGAAGTTTTGGTGCACCAATATTCAAGTATTTTAATAAGAATCTATCTGCAATT------CAATTAAAATAATCGTTTTCT--------TCCAGCCCAACCGCGGAAAACAAC--AAA-GACAAAGAATCGATTGAAGAAGAACCGTCCAATCAACCAACTCCACCGCCTAATCG---TCATCTGCCATACACCAGAAGAATTTTGACACCAAAACCAAGAATTGTGCAA------ACCACGACTGCTGCTCCTGA---------GACTATTGCCCCACCAGTTCAGGTTCAGGTAAA--------ATATGTT
i caeJap4.Scaffold16506  I 77 I 2300

a score=-42415.000000
s ce10.chrX              1588614 127 + 17718866 GGGGGGTTTTTAGATAATTTGG----------------------AAGGCATTTGGTTATGGTTCATGGGCCCAGGTATCAATTTAAAAAAT--GTCGAAAAATGTTATTCTACAACTTAAGGGTTATTTGAAATAACCAAAAATTTGAAAA---------------------------------------------------------
s cb4.chrX                748625  52 + 21540570 ----GAGCAATTTCCAATAATA-------------------------------------------TAATTTTaatttgcac------------aaaaaaaag------------agtaagaAA-------------------------------------------------------------------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  150512  52 +   199417 ----GAAATATTGATAAAGA----------------------------------------------------AGGTTGTAC------------AGACCAAAATCGGCTTGTTACAGCCAA----------------------------------------------------------------------------------------
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    128390  82 +   141934 ------GTTTTTGACATTTCTT----------------------------------------------------ATTGCAA--TCATAATT--ACAAAAATCAGTACTTC------TAAAATGT-------------------TTATCAAATCCCTGGTTTCGATCAGG---------------------------------------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       15585 189 -   344637 GATGGAGTTATTTATAATTCATGTCCAATCGGACGGACCCTGCTATAACGTTTTGT---------TGGATTAAAATtgcaaactcaaaattgaatagaaatgtaGATTTTGCTGAGTAAAATACGCCTTGAGAC-------TATAATCAAA---CCGGTGCCGATCAGGATGGTCTGACGTTGGTACAAAGTGTTTAGACGCGTACAA
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97915 2300 +   115485 I

a score=-25950.000000
s ce10.chrX              1588741 129 + 17718866 TTACCCATGCTTCGAATTTTTGTTTTGAATTGAAATTTTCAAAAATT------TTGGAAAA------TTGACA----------------------------TTTTTGAGATT---------------------TTTTTGAAAG-----------------------------TCAATATCCCGGGA---------AATTTTT--GCATTAACATAAATTTTCTAGAAG----CT------------
s caeRem4.Crem_Contig196  150564  79 +   199417 --------------------CGTAT--ATACCttgatttctaaaaat--------------------caaac---------------------------------taAACAC---------------------GTTCTGGA-------------------------------CTATGAATCATAGG------------------ATATCGTCGTG-----------------TTAATCTAA-----
i caeRem4.Crem_Contig196 C 0 I 2
s caeSp111.Scaffold514    128472  83 +   141934 ----------------TCTTCGTTT--ATT-------------------------------------CAAACA----------------------------CATTTGAAC-----------------------TTTCCGgaga-----------------------------caaaaaaatagaaa------------------aaatcgtCAGAAAAT------AAA----CCAATCTAGATCTA
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       15774 243 -   344637 CTGATCAAAATCCACACTTTTATAT--ATTTGCTGCTCCCcaaaattgcaattttgagaaaaaaaaacaaacattgcGGGCCTTTGCGGGACCAGCATACTCGGTTGAACATGTtcgcttttttctgaattttttttcgaaaatttgagtttgaaaatattttctgtctGTTTAAACAATCcgaaatttcagccaaattcctgcaaattgaaagaaaat-ccTAGAAAGTGCCCCACCCAAACCTC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97915 2300 +   115485 I
e cb4.chrX                748677   0 + 21540570 C

a score=-70915.000000
s ce10.chrX              1588870 219 + 17718866 CAAA-----------------------------TTTCAAGTTCTAAAAATTTTTATATTATTTCCAAT---------GTTTTTAT-----------------------------CTTGTCCTAA----AACTGAAAAAAATCAATAATTTTCG--------AATTTTTTTAAAAGAAAACAAAAACTGAAGTTTGTCATAAA---------TCCtaaaaattaaaaaaaaaaaaaaCGAAAATTTTCGATTTTT---------CAAAA-----------------------------ATCGAAATTTTTTTTGAAG----------TGGAAAAAATCGATAAATC-AAAATTT-------------TCC
s cb4.chrX                748677 124 + 21540570 CAAA-----------------------ATTCAAGCTCA---------------------------------------ATTCTTGT-----------------------------TCAATTAGCA----TCATCATTT------------ATGA--------TTATCTGACGAA--------------------------------------TTCTAC------------TAAAC-----ATATTTTCTCA-ACG---------TAAAA------CG---------------------CTATtcattttaattgaat-----------------------ttatgcaaaaattt---------------c
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  150645 131 +   199417 TAAA-----------------------ATCTTGTTTCCTTGT-----------------------------------ATACGTAT-----------------------------TTTGATAAGA----AGATCAATTGAA--------CGTAT--------GTATCCTGCGTG--------------------------------------TTCT------------------------GTGTTTTGTAACAAG---------TAAAATTGCATTA---------------------CTAAAAACATAAATGGAAT-----------------------ATTTAT-CAAACTC---------------A
i caeRem4.Crem_Contig196 I 2 C 0
s caeSp111.Scaffold514    128555 219 +   141934 CAAA-------------------CTGCAAGTTGTATCATGGT---AgtctttttatattttcccTATA---------AAACCAACTCGGTATTGTGTATCATCCTGTTTTCGATTGAGATAAGGCTTcgaatcacaaaaa---ataattttat--------ttttatttcgagatgattaaaaaa--------------------------ttttat---ttgataaaattGAC-----GAATTGTGGGACTAA---------CAAACACATCTTG--------------------------ttctttcatttgtt-----------------------tttttc-gaaactt---------------t
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       16017 344 -   344637 TAAAGATCAAACTAAACATGTTCCTTCAACATGATTCATCGT-------TTCTCCCATTCTCTGTGTATCATTTGTTAAACAAAC-------ACGATATCACAACTTTTATGGGCATGATAAGA----AAATCGAATGAACGCATAGTCATGTGTTCTGTGTTTTGTaacaaagtgaaaagaaaattga--ttgggAACGGAAGTTGGGACTTTCAC---TCTAGAAAATGAACGGAAGGAGTTTTAGAATTAGTTTTCGTTCTAAAAACAGTCTGAATGTCTACATGAAAGCCCACGTAACAATTTAAATTTGGCGAGTTTGAagtgtgaaaaat-aatttttt-gaaatttagtccAACAAAtgtcc
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506    97915 2300 +   115485 I

a score=206751.000000
s ce10.chrX              1589089 459 + 17718866  
s cb4.chrX                748801 457 + 21540570  
i cb4.chrX               C 0 I 3
s caeRem4.Crem_Contig196  150776 496 +   199417  
i caeRem4.Crem_Contig196 C 0 I 60
s caeSp111.Scaffold514    128774 472 +   141934  
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       16361 509 -   344637  
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   100215 453 +   115485  
i caeJap4.Scaffold16506  I 2300 C 0

a score=1229.000000
s ce10.chrX              1589548 24 + 17718866 ATTCAGG---ACCA----ACAGAAGGTAGGT
s cb4.chrX                749261 21 + 21540570 ----------ACTATTGAACAGAATGCAAgt
i cb4.chrX               I 3 C 0
s caeSp111.Scaffold514    129246 26 +   141934 TGCCTGG---ACTA--GAACAGAATGTAAAT
i caeSp111.Scaffold514   C 0 I 28
s caePb3.Scfld02_133       16870 29 -   344637 TGTTTGGAGCACAG--GATCAGAAGGTGAga
i caePb3.Scfld02_133     C 0 I 2
s caeJap4.Scaffold16506   100668 24 +   115485 --TTTGA---GCAA--AATCCAAAGGTAGGG
i caeJap4.Scaffold16506  C 0 C 0
e caeRem4.Crem_Contig196  151272 60 +   199417 I

a score=94.000000
s ce10.chrX              1589572 19 + 17718866 GGaatttttttaatattaa
s cb4.chrX                749282 14 + 21540570 gtaagttttcaa-----aa
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_133       16901 16 -   344637 aacagtttttga---tgaa
i caePb3.Scfld02_133     I 2 C 0
s caeJap4.Scaffold16506   100692 16 +   115485 TGGATTTTTATA---Ttaa
i caeJap4.Scaffold16506  C 0 I 35
e caeSp111.Scaffold514    129272 28 +   141934 I
e caeRem4.Crem_Contig196  151272 60 +   199417 I

a score=-1885.000000
s ce10.chrX              1589591 38 + 17718866 ttttaCCATG-------AAAATTCTCGGCGGTTTTCaaaattaaa-
s cb4.chrX                749296 31 + 21540570 tttcttcacg----agtataact----------ttcaaaaatcaa-
i cb4.chrX               C 0 I 38
s caePb3.Scfld02_133       16917 41 -   344637 ttttggtgcgaaaaagtgaaaataatgg-----ttttaggctgaaa
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   100708 35 +   115485 I
e caeSp111.Scaffold514    129272 28 +   141934 I
e caeRem4.Crem_Contig196  151272 60 +   199417 I

a score=672.000000
s ce10.chrX              1589629 42 + 17718866 aaa-----aaaaataatttCAAAAATGCAAA------AATACTTGCCGCCAGC
s caePb3.Scfld02_133       16958 53 -   344637 aaatggctaaaaacaatttcgagtttcctgaattttgaaaacttgcaGTCTGC
i caePb3.Scfld02_133     C 0 I 128
e caeJap4.Scaffold16506   100708 35 +   115485 I
e cb4.chrX                749327 38 + 21540570 I
e caeSp111.Scaffold514    129272 28 +   141934 I
e caeRem4.Crem_Contig196  151272 60 +   199417 I

a score=0.000000
s ce10.chrX              1589671 132 + 17718866 AGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCTGGTCAACAGACTACATTTTTTATAGTGACGAAAATTTTTCAAACAATTATTCTGTAGAGAATGGTCA
e caePb3.Scfld02_133       17011 128 -   344637 I
e caeJap4.Scaffold16506   100708  35 +   115485 I
e cb4.chrX                749327  38 + 21540570 I
e caeSp111.Scaffold514    129272  28 +   141934 I
e caeRem4.Crem_Contig196  151272  60 +   199417 I

a score=-2123.000000
s ce10.chrX              1589803 676 + 17718866  
s caePb3.Scfld02_133       17139 490 -   344637  
i caePb3.Scfld02_133     I 128 I 91
e caeJap4.Scaffold16506   100708  35 +   115485 I
e cb4.chrX                749327  38 + 21540570 I
e caeSp111.Scaffold514    129272  28 +   141934 I
e caeRem4.Crem_Contig196  151272  60 +   199417 I

a score=0.000000
s ce10.chrX              1590479 128 + 17718866 CAAAGTATTGAACCAAAAATATTTGCCGCCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCTGGTTTCTGGGTCGCATTTTTGATAAGAAAA
e caePb3.Scfld02_133       17629  91 -   344637 I
e caeJap4.Scaffold16506   100708  35 +   115485 I
e cb4.chrX                749327  38 + 21540570 I
e caeSp111.Scaffold514    129272  28 +   141934 I
e caeRem4.Crem_Contig196  151272  60 +   199417 I

a score=-600.000000
s ce10.chrX              1590607 86 + 17718866 AAAATATGTTGG-----CAAAAATGTGTCAAACTTTTTTGGCCCAATAAGTAGAGCAGCCGACACCTACCGGGTTTCCAAAACCAAGTTCT
s caePb3.Scfld02_133       17720 73 -   344637 agaatccgtcAGCCTCACAAAA------ctagcttttttt-----ctaattaaacCTACCACCATTTA-------TAAACATCTcacctca
i caePb3.Scfld02_133     I 91 C 0
e caeJap4.Scaffold16506   100708 35 +   115485 I
e cb4.chrX                749327 38 + 21540570 I
e caeSp111.Scaffold514    129272 28 +   141934 I
e caeRem4.Crem_Contig196  151272 60 +   199417 I

a score=273.000000
s ce10.chrX              1590693 1 + 17718866 A
s caeRem4.Crem_Contig196  151332 1 +   199417 A
i caeRem4.Crem_Contig196 I 60 C 0
s caePb3.Scfld02_133       17793 1 -   344637 a
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   100708 35 +   115485 I
e cb4.chrX                749327 38 + 21540570 I
e caeSp111.Scaffold514    129272 28 +   141934 I

a score=1705.000000
s ce10.chrX              1590694 9 + 17718866 CTTTCAGAA
s caeRem4.Crem_Contig196  151333 7 +   199417 TTTCCAG--
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    129300 7 +   141934 CTTTCAG--
i caeSp111.Scaffold514   I 28 C 0
s caePb3.Scfld02_133       17794 7 -   344637 ttttcag--
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   100708 35 +   115485 I
e cb4.chrX                749327 38 + 21540570 I

a score=100.000000
s ce10.chrX              1590703 1 + 17718866 C
s caeJap4.Scaffold16506   100743 1 +   115485 C
i caeJap4.Scaffold16506  I 35 C 0
e caePb3.Scfld02_133       17801 0 -   344637 C
e cb4.chrX                749327 38 + 21540570 I
e caeSp111.Scaffold514    129307 0 +   141934 C
e caeRem4.Crem_Contig196  151340 0 +   199417 C

a score=58703.000000
s ce10.chrX              1590704 443 + 17718866  
s cb4.chrX                749365 474 + 21540570  
i cb4.chrX               I 38 C 0
s caeRem4.Crem_Contig196  151340 535 +   199417  
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    129307 473 +   141934  
i caeSp111.Scaffold514   C 0 I 1342
s caePb3.Scfld02_133       17801 536 -   344637  
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   100744 512 +   115485  
i caeJap4.Scaffold16506  C 0 C 0

a score=152.000000
s ce10.chrX              1591147 28 + 17718866 GGTATT--------------------------TTTTTCTATTTATTGATCCGAT
s cb4.chrX                749839 28 + 21540570 ggtatt--------------------------tttctgaatttattgtTCGAAT
i cb4.chrX               C 0 I 2830
s caeRem4.Crem_Contig196  151875 54 +   199417 GGTATTCCTTCTATcccataatttattttctctttccgatgtttcttttttaat
i caeRem4.Crem_Contig196 C 0 I 8
s caePb3.Scfld02_133       18337 24 -   344637 Ggtatt--------------------------tcttca----tttgttccCAAt
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   101256 27 +   115485 tgtgtc--------------------------tttcta-atttattttcactat
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=5610.000000
s ce10.chrX              1591175 92 + 17718866 ACAAACAATAATTTTTCC--CAATATTTTAAATTCA-----TTTCCGTGCTACTCTCCATT---------CTTTTGACATTGTGCAAAACTCAAGGTTCAGTGTGTAT
s caeRem4.Crem_Contig196  151937 87 +   199417 -------CCAATCGTTTCATGTActtctcaaaatc------ttttttttcttttccccaaT--------CCCCTTGACATTGTGAATAACTCAAGGCTCAGTGTGTCT
i caeRem4.Crem_Contig196 I 8 C 0
s caePb3.Scfld02_133       18361 96 -   344637 ------cctaatttattt-----tttctcaaattcatgtatttttctgtcgcttctccagttttttccaTCCCTTGACATTGTGAA-AACTCAAGGCTCAGTGTGTTT
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   101283 73 +   115485 ------------ttattt-----------------------atttttcccgttttccctgttccgttttccccTTGACATTTACATTGACTAAAGATTGAATGTGCGT
i caeJap4.Scaffold16506  C 0 I 4691
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=-775.000000
s ce10.chrX              1591267 74 + 17718866 GTGTG---TTGTTTTATT------TAAATTCGTTTTGAATAAAGC----TTTCGaatatttttatttt-tgaaaaaaaaaattagaaa-
s caeRem4.Crem_Contig196  152024 72 +   199417 TTTTC---TCAccct-tttttcaatgaatttatgaaaaatgaaac-------------catgaatttgaaacatgaaagaAATGTAACA
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       18457 87 -   344637 GTTCCCcttcattctatttttcaatgaatttatgaaaaatgaggtgTGGTTGCAAATGTATGAATGTG-TGTACGAAACAATTGGCAA-
i caePb3.Scfld02_133     C 0 I 1381
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=662.000000
s ce10.chrX              1591341 45 + 17718866 atggactgtaatggtctaatttac----ctataagaaaatttgaaagat
s caeRem4.Crem_Contig196  152096 47 +   199417 ATtgac--aaatatttttgtttacgaagctagagaaaaatggaaaaaat
i caeRem4.Crem_Contig196 C 0 I 929
e caePb3.Scfld02_133       18544 1381 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=0.000000
s ce10.chrX              1591386 637 + 17718866  
e caePb3.Scfld02_133       18544 1381 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  152143 929 +   199417 I

a score=11223.000000
s ce10.chrX              1592023 127 + 17718866 TGAACAGCAGGTGT-------GTAGTACACACCGACTCATTTATTTG-------------------------TCGCCT------------CACCCGT------TTTTGATTCAATG-----TATTGTTCACTTGT-TTGT------------------------------GTGGAAAAGGTGGATTAAAGT----GTTTCGCAACATTTGAGCGGTA
s caeRem4.Crem_Contig196  153072 190 +   199417 TGAACAGCGGTTATTGAATAGGTAGTACATTCCGACTCATTTATTTGGTCActcacctcctcct--------cctcccctCCGTATTTGTCGCCCGTATTTTATTTCGATTCATTGTATTCTTTTGTACATTTGTGTTGTGTCATTTTTCGGCTAG--------------GTAGAATAGGGGGG-AGTGGT----ATTTCGCAACTTTTGAAGAGta
i caeRem4.Crem_Contig196 I 929 I 351
s caePb3.Scfld02_133       19925 200 -   344637 TGAACAGCGGTTATTGAATAGGTAGTACATTCCGACTCATTTATTTGGTCACTTCTCCCCCCTTTTTGTTTGTCCCCCCTC---------CTCCCGTATTTCATTTCGATCCATT------CATTGTACATTTGT-TTGTGTCAATTTGagggaaaaaggaggagaacgtgaagaaaaggagga-ggctATGTGAATTTCGTAATAATTGAGTAGTG
i caePb3.Scfld02_133     I 1381 C 0
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=91.000000
s ce10.chrX              1592150 1 + 17718866 A
s caePb3.Scfld02_133       20125 1 -   344637 A
i caePb3.Scfld02_133     C 0 I 9838
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  153262 351 +   199417 I

a score=0.000000
s ce10.chrX              1592151 1341 + 17718866  
e caePb3.Scfld02_133       20126 9838 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  153262  351 +   199417 I

a score=7020.000000
s ce10.chrX              1593492 380 + 17718866 AGTGACGT---CACCTGTCTTCCCAATTCCCCCATCTTCTCC--------CGCATCATTATAAGTATTAAACGACGAATAATAGTTGAAAGAAGACAAGAAGGAATAAAAAAAACCATGCGTGGATTG-----------------AGTGGTTAAATAACCTCAATTGAGAAAGGAAAAGA----------------------------------GGTTCGATTCCTATTCATC---GATGATTTA--CCTCCATGCAGTAATTGTGTTTGTCGTCAAGAATCATCATCGGTTTTGCAGGTGAATTGAAATTGTTCAGGTTTT--CAGTTTTG--GGTTTAGTTTTCT------------TTTTG-----TTTTGCGTTGTT--------TTCTTAGTTTTTGTAGGAAAACAAGACGGTGGTTTTTTGACTTTTCCAAATTTTTGGTTATTTTTCAATTTTGTTTTCTGAGAAAAA
s caeRem4.Crem_Contig196  153613 436 +   199417 AATGACGTGAGTATGTGTCTTCTC--TTcccccccTTTTTTCTACCTCGTCCCATCATTATAAGTATTTAACGATGAATAATGG--------------AATTGTATAAGAATAAGCGT-CGTGGATTGGAAGTGAGGTGTATTCTAGTGGttaaatgacctcaattgaggaagaagaagagaaaagaagacgttgaggAGGAGGGGACAAGGTTGAGTCTATTTCTATTCAACGATGATGATTTACTCTTCGATGAAGTAAT--CGGTTGTCGTCGAGAATCATCATCTTCTCTTC----------AAATCCTTCtagtttttgtggttttgGAGGTTTAGCTTTGTATGCTGTTGTGATTTTGACAGATTATGCGGTATTAGTATGTGTacatatttttgttaaaataataGCAGTAtagtatttcattttttc---atttttttttgttcggcgaat--------tgagaaaaa
i caeRem4.Crem_Contig196 I 351 I 1947
e caePb3.Scfld02_133       20126 9838 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=0.000000
s ce10.chrX              1593872 1830 + 17718866  
e caePb3.Scfld02_133       20126 9838 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  154049 1947 +   199417 I

a score=4053.000000
s ce10.chrX              1595702 182 + 17718866 AAAAAGTTGTTTGGTGGGTGTATTTGAGAA-TAGATTTGTTCGTTTTCGCTAAACAAAAGTTTGGTG-----------AGGAGGGGGGGGGGGGAAGGGGGGAGATGTAGTTGGTCACAGAGGAGACACCCCAGGGACGCATCCTCCAAAAACCATTTTCTGGCTGGTGCTACGAAAGATTGGGCTCATCTTTT
s caeRem4.Crem_Contig196  155996 162 +   199417 aaaaagttttttagt-------cTCGAGAAATGCGTTTGTTCgttttc--taaacaaaaacttattttcctTGTCTTCATGGGTTGTGGTGGGAA-------------------TTGAAGAGGAGACACTCAAGGGACACATCTTCTTGAAACCATTTTCTGGACA----CACAAAAAAGATAGTTcatctttt
i caeRem4.Crem_Contig196 I 1947 I 514
e caePb3.Scfld02_133       20126 9838 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=0.000000
s ce10.chrX              1595884 2189 + 17718866  
e caePb3.Scfld02_133       20126 9838 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  156158  514 +   199417 I

a score=724.000000
s ce10.chrX              1598073 57 + 17718866 cgctagTCCAACCTCATCTTCCATATGTCCCTTCAAATTTTTTTGCTGTCTC--------TGTTC
s caePb3.Scfld02_133       29964 62 -   344637 CAtttgccccttctcctcctccttttttccctcc---tttttttctcttcttaccccaatttttc
i caePb3.Scfld02_133     I 9838 C 0
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I
e caeRem4.Crem_Contig196  156158 514 +   199417 I

a score=793.000000
s ce10.chrX              1598130  9 + 17718866 -------------TCCTTTTTC
s caeRem4.Crem_Contig196  156672  9 +   199417 -------------TCGTTTTTT
i caeRem4.Crem_Contig196 I 514 C 0
s caePb3.Scfld02_133       30026 22 -   344637 tccatatgacgctccgtttttt
i caePb3.Scfld02_133     C 0 I 7
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    129780 1342 +   141934 I

a score=15793.000000
s ce10.chrX              1598139 56 + 17718866 CAAAGGCAACAGAAAAAGAA-------GAAGAGGGGGTCTCAAGTGCAATCAACCTCTTTCTT
s caeRem4.Crem_Contig196  156681 63 +   199417 AagaggaaacagaaaaaagaggcgGCCGGAAGGCTGGTCTCAAGTGCAATCAAcctccttctt
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    131122 53 +   141934 -------CACAGGGAATAGA---GGATGAATAGAAGGTCTCTGGTGCAATTGACCTCCTTTTT
i caeSp111.Scaffold514   I 1342 I 939
s caePb3.Scfld02_133       30055 56 -   344637 -------aacagaaaaaagagagggccGGAAGGCGGGTCTCAAGTGCAATCaacctccttctt
i caePb3.Scfld02_133     I 7 C 0
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I

a score=11129.000000
s ce10.chrX              1598195 101 + 17718866 TTTCCTCATCCACACACACACACACACATTCTCA----------AGACGAGATCTTGACGC--------AGAATT---TGG--------TCAACAACAACATGTATAATTCATTTAGTGTATGAGACGAG---
s caeRem4.Crem_Contig196  156744 124 +   199417 -tctctctcccattttcttctccacacATTCTCa--agggagagaaagaagatcTTGACGCCCCGTGTTAGGATGGAATAG---GGGAATCAACAACACAATGTATAATTCATTTAGTGTATGAGAGGAG---
i caeRem4.Crem_Contig196 C 0 I 608
s caePb3.Scfld02_133       30111 114 -   344637 -------------------ctttccacattctcaagagagagagaaagaagatctTGACGCCCCGTGTTAGGATGAGAGGGAGAGGGAATCAACAACACAATGTATAATTCATTTAGTGTatgagaagaaggg
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=470.000000
s ce10.chrX              1598296 10 + 17718866 CGAATTTTCT
s caePb3.Scfld02_133       30225 10 -   344637 aagattttct
i caePb3.Scfld02_133     C 0 I 1329
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I
e caeRem4.Crem_Contig196  156868 608 +   199417 I

a score=0.000000
s ce10.chrX              1598306 1086 + 17718866  
e caePb3.Scfld02_133       30235 1329 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175  939 +   141934 I
e caeRem4.Crem_Contig196  156868  608 +   199417 I

a score=482.000000
s ce10.chrX              1599392 41 + 17718866 AAAAAGTTCAACCCTTTTCCCATCTCACTTCTCTTCTTTAT------
s caeRem4.Crem_Contig196  157476 47 +   199417 aaaaacCTCTGCTTTTTCCCTCTCATactctttctctcacttttcca
i caeRem4.Crem_Contig196 I 608 C 0
e caePb3.Scfld02_133       30235 1329 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=11249.000000
s ce10.chrX              1599433 200 + 17718866 ACTAATTCCATTCGCAGCGAGCGC-------ACAGCTTCACCCTCCGTCTCTCGCTCAGTACTTTTTTGCAGTGTGCTCCGGGCTCTCTTTTCC--TGCTCCGCGCTCCGATTTTCACATTCACATTGCACTAATCTGGTTGTTCTTCACAATTTCGCACGTCTTCTTTTTCTCGTT-------CACTTCCACTTTTTTCTTTGCAAAATTGGTTT
s caeRem4.Crem_Contig196  157523 166 +   199417 aCTAAATCCCTTCCCAGggctctctttttttgtgacttcacacac--------------------------------------tctttttctctagtCCCACTTTTTTCCCATTT-------GCATTGCACTAATCTCTCTGATCTTCAGATTTTCACacgtcttctttctt--tttgacttGGCACTTCcctatttttct---cgaaatgcGTTT
i caeRem4.Crem_Contig196 C 0 I 3163
s caePb3.Scfld02_133       31564 163 -   344637 ACTAATTCCATTCCCATAGAGCTC------TGTGActtcactctt--------------------------------------ccctcttcttc--ttctactttcttctattttcattctcGCATTGCACTAATCTGGTTGATCTCCACAAtttcgcacgtcttctttctttctcttttttgccgttttccatttcttc-------acttcgttt
i caePb3.Scfld02_133     I 1329 C 0
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=182.000000
s ce10.chrX              1599633 2 + 17718866 TT
s caePb3.Scfld02_133       31727 2 -   344637 tt
i caePb3.Scfld02_133     C 0 I 1609
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I
e caeRem4.Crem_Contig196  157689 3163 +   199417 I

a score=0.000000
s ce10.chrX              1599635 1054 + 17718866  
e caePb3.Scfld02_133       31729 1609 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175  939 +   141934 I
e caeRem4.Crem_Contig196  157689 3163 +   199417 I

a score=786.000000
s ce10.chrX              1600689 23 + 17718866 CTCGCATCTTTTTAACGTCCCCC
s caeRem4.Crem_Contig196  160852 17 +   199417 cccgcATCTTTTTGAC------C
i caeRem4.Crem_Contig196 I 3163 C 0
e caePb3.Scfld02_133       31729 1609 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=17198.000000
s ce10.chrX              1600712 188 + 17718866 AGGCGGCGGCGGTCAAGC----------AGATGGGTCAGTTTCCA-----------------TTCCCCCCCCCC-CCCTTTTGCCTACTTCACAACAATTTCGCGCAGA----------GGATA--------TTGCACATTTATGAGCTCATTTATGGCAATAACCTTCCACCTCCTTAGCCCTCATTTTCTTTCCGCCAGA----------GGGACAC----CCAATT--AGACCTTGAAAATGTACAA
s caeRem4.Crem_Contig196  160869 221 +   199417 ----AGTCGCCGTCAACTGGTTATTGGCAGCTGGGTCAGTTTCTAAGTGACTCTCTTCTCTccccccttcttct-tccactcaTCCGTTTCAC-TCATTTTCGCGCAAAGACGAAAGGAAAAGGGGTCGAGCGTGCACATTTATGGGCTCATTTATGGCAATAACCTTCg-----cctcattttcttcattttctagc--------------GGGGTGT----CCAATTAAAGaccttgaaaatgaaaaa
i caeRem4.Crem_Contig196 C 0 I 760
s caePb3.Scfld02_133       33338 215 -   344637 AAGCAGCTGGGGTCAGTT-------------TCGGTCAGTTTCTAAGTGACT----------CCCCCTCCTTCCAACCACTCATCCGTTTCAC-TCATTTTCGCGCAAA-ACGAGAATTGAGGG--------GTGCACATTTATGAGCTCATTTATGGCAATAACCTTCGtcctccctctctttctttttctttttcccgaCGACTATTTTAGGGGTGTATTGCCAATT--AGaccttgaaaatgaaaaa
i caePb3.Scfld02_133     I 1609 I 3991
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=0.000000
s ce10.chrX              1600900 689 + 17718866  
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I
e caeRem4.Crem_Contig196  161090 760 +   199417 I

a score=551.000000
s ce10.chrX              1601589 26 + 17718866 AAAAGCTTAGAGCCCCCCGCGGCTTC
s caeRem4.Crem_Contig196  161850 22 +   199417 AAAAGCTTAGACTCGCCTTcg----t
i caeRem4.Crem_Contig196 I 760 C 0
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   101356 4691 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=10280.000000
s ce10.chrX              1601615 59 + 17718866 TTCCTTCAATTTTCTTTTTTTTTCTCCTCCACT--TCTAATTAAGTTATCGATTTTCCCTT
s caeRem4.Crem_Contig196  161872 59 +   199417 ttccttcaattttccttttttttcctcCACTCC--TCTAATTAAGTTATCGATTTTCCTTT
i caeRem4.Crem_Contig196 C 0 C 0
s caeJap4.Scaffold16506   106047 61 +   115485 ttcctttcctttcctttcgtttccttttccACTTGTCTAATTAAGTTATCGATTTCCTTTT
i caeJap4.Scaffold16506  I 4691 I 1312
e caePb3.Scfld02_133       33553 3991 -   344637 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=91.000000
s ce10.chrX              1601674 1 + 17718866 T
s caeRem4.Crem_Contig196  161931 1 +   199417 T
i caeRem4.Crem_Contig196 C 0 I 947
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=0.000000
s ce10.chrX              1601675 1370 + 17718866  
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175  939 +   141934 I
e caeRem4.Crem_Contig196  161932  947 +   199417 I

a score=627.000000
s ce10.chrX              1603045 73 + 17718866 CTACTCGTCCACTTTATTACCTGCACTAGTTTGTTTGCCTACCCCAAAGTTTCACTCACATTTTTCATACCTA
s caeRem4.Crem_Contig196  162879 63 +   199417 CcactcattctttttttttctttcacttgCT-GTTTCTCTATCC---------ATccccccccTTTACCCCAT
i caeRem4.Crem_Contig196 I 947 C 0
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    131175 939 +   141934 I

a score=-1981.000000
s ce10.chrX              1603118 52 + 17718866 CATTCTCACCTCGTCTCTCTGCCTGCTCTCGTGTTCGGTTCGCGCGTCTACC-----
s caeRem4.Crem_Contig196  162942 28 +   199417 ------------------CGTCCCTCCCTTCT-----------CCCTCAGTCTTCTG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    132114 43 +   141934 catttccactctgtttcttttccccCTCTTCT-----------CTAGCTGCTTT---
i caeSp111.Scaffold514   I 939 C 0
e caePb3.Scfld02_133       33553 3991 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I

a score=17854.000000
s ce10.chrX              1603170 65 + 17718866 CCAAATCCGGCTCCTCCCCCC----TTAATTGACCCG-CCCGTC----------CGTGTCCTCCA-----------CTCTTCTCGGACACC
s caeRem4.Crem_Contig196  162970 85 +   199417 CCAAATCCGGCTCCTCCCCTATGGGTTAATTGAACCG-CCCGTTTCCTC-----TTCGTCCTCcacacttttctctctcttctcggACACC
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    132157 57 +   141934 CCAAATCCGGCTCCTCCCCTGTGAGTTAATTGAACTGCcccgttttctc----------------------------tcttcttg------
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       37544 86 -   344637 CCAAATCCGGCTCCTCCCCTATGGGTTAATTGAACCG-CCCGTTTCCTCTCCGGCCCGTCCTCca----ttcctccttcttctcggaCACC
i caePb3.Scfld02_133     I 3991 I 1424
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I

a score=2720.000000
s ce10.chrX              1603235 217 + 17718866 ACTACCCTCATCGTCCCCCCCCCCCCCCCCGAACAACCTCTCTCCG---TCTGTTTATTGTTCT----TTGCCGTGTGTCCCCTTTTGTGAATAAGTAAAAAAAAA----ACGGAGGAAG-----------GGGGGGGGGGC--GGTGTGCGCTAAAAAAAGGTTCTCGGATTTCAC-----------------AGGAAAACTGAGAGCTCCTAAGCGTTTATTTTGCGATTTCATTTTTTTTTTCGGATTTTTGAGA-------------------
s caeRem4.Crem_Contig196  163055 183 +   199417 --------------------------------ATACCA----AACGAATTGTGTTTATTGTTCTC---TTTCCGTGT---CCTTTTTAAAAAGAAGTAAGG---------GGAGAGGAAA-----------GGGAAGGGGGTTGTGTGTGCGCTaaaaaaaGGTTCTCGGATTTCACTTTTGCATAGGAAGTCGaaaaaaaCCTAGACTCCTCG-----------GCTAAGAGCGTTTTTTGTT--GGACTATTAAAA-------------------
i caeRem4.Crem_Contig196 C 0 I 15
s caeSp111.Scaffold514    132214 244 +   141934 -cTTCGTTTTACGCCACACACTACTCTTTTGGACACCAGCACACCGCATTGTGTTTatcgttctcttttttcgttgt---cCTTTTTGTAATGAAGTAAGAAAAGCAAGTGGAGGAGAAAGATGGAAATGGGAGAAGGAGGT--TGTGTGCGCTAAGAAG----TCTCAGATTTCATCGCTGCAC---------TAACTAACAGAGTATTTTCA---------TCGATAACCgcatcatttgtt-----tttttttaattttactCATTCtcgttca
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I

a score=66.000000
s ce10.chrX              1603452 44 + 17718866 TTTTGTTTTCCTATTGTGGATCTTTGGGAACTCAAT----TTTAATAA-
s caeSp111.Scaffold514    132458 44 +   141934 attttttctcttgttgcAAA-----GAGCAATTATTACTGTTTAATAAT
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeRem4.Crem_Contig196  163238 15 +   199417 I

a score=1937.000000
s ce10.chrX              1603496 13 + 17718866 ATTTGTAATTTTC
s caeRem4.Crem_Contig196  163253 13 +   199417 atttttgattttt
i caeRem4.Crem_Contig196 I 15 C 0
s caeSp111.Scaffold514    132502 13 +   141934 ATTTGCAACCTTC
i caeSp111.Scaffold514   C 0 I 507
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I

a score=273.000000
s ce10.chrX              1603509 3 + 17718866 AAA
s caeRem4.Crem_Contig196  163266 3 +   199417 aaa
i caeRem4.Crem_Contig196 C 0 I 10
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I

a score=0.000000
s ce10.chrX              1603512 52 + 17718866 AAAAACTTGAAATTTAGTGGGAATTGAAAAAATATTGTGCAAAAAAATAGTT
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I
e caeRem4.Crem_Contig196  163269 10 +   199417 I

a score=-1277.000000
s ce10.chrX              1603564 243 + 17718866 TTTGCAAAAGCAAGTAATATTTTAAATTTTTCCTACTTTTTTGTAGATAGCTAATTTAAATCATTTTCTTTCAAC--TGACATTTGTTACATTTTAGAGATGCTCAAAAATGAGCTCAGTACCTTAAAAAATTCATCAGCTCCAAAAAAGGACACACTTTTTCGTGACCTCCCCCAACTAACTCTCCCAACTCCATACAGCATGGCAATGGCCAAAAACTTCCATCAT------CCGATTATTTTTCATGT
s caeRem4.Crem_Contig196  163279 119 +   199417 TTTTTAATAGCCAAGAATATGTTAA----------------TACGGATTGCTAA-------CATATGTATTCAACCCTACCGTTTCTCTCCTTTCA--------------------------------------------------------------TTTTGTTGAC---------------------------------------------AAAAacttccatcattttcatccGATTATGT--CATGT
i caeRem4.Crem_Contig196 I 10 C 0
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                749867 2830 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I

a score=2448.000000
s ce10.chrX              1603807 52 + 17718866 TTGTTCTGTCCCATCCCTCTCGTTTTTTTTTCTCATTTCCTCTCG---TGCCATT--------
s cb4.chrX                752697 52 + 21540570 TCGTTTTGGCCCTGTCTCTTCGTTTTTCCTCCTCACTCTTTTTCG---CGCCCTT--------
i cb4.chrX               I 2830 I 215
s caeRem4.Crem_Contig196  163398 63 +   199417 TTGTTCTGCCATCCTTTTTCCCTCCCTCCTCTTGGTTTTTGTTCGTCTCACccctcaattttt
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e caeSp111.Scaffold514    132515 507 +   141934 I

a score=-2348.000000
s ce10.chrX              1603859 466 + 17718866 TCATGGATTCTTTTCCATGCCGTTCGTATCAAATTTCCCTTATCGTGAAGCACTTTGTGTTCCTTATCTGCACGAACTTTTTGGAGGCTTTAGTGGTTTGAAAATGTTAAAAATGTCATGAAAATTGTCGGGAATATGTCATAAAATAGGAAAAACCACCCAAGGTTTAGGTGTTTTTTTTCAGTTTGT--TGGGGAAT--TTTTATTACAATAAAAA----ATAATGCTTGATGCTTGAtagtgcttgatttagtgcttgatttaTTTTTGTAAAACTGGGAAATTTTTTGAAAAATTCGAATTCAAAATTAAACAACATTCAAATTTCAAAGTTCAAAATAAATGAATTTCAAAATTAACAAATTACATAAAAATGTTGTTTTTTTTTCAATAATTTTTTGTTTAAAAAATCTGTGGACTATCGATTTTTTTTGAAAATTTCAATTTTTAACATTTTCCTAAAAAATTTATT
s caeRem4.Crem_Contig196  163461 331 +   199417 ccatggATTTCGTTatcttccatttctctt---tGTCCCGTTCGGCATAGAACTCT---CTtcttatct------atttttcagaca--------------------taaaACTATTATTAGGGCGGTTTAGCACATTTT----------------TCCCC-----TGCAGTGTTCCTTATCATTTCATAGTATGGAATGACTTTTTTGCACTAACAATCGAATAAATTCCAacattt-------------ctcgtttttggTTT------------CCGAG-----TCCTATAAAATATGACCTTAAAG--------------------AAAATGctaaaca-------ctaaaaactaaaaactccCACAG-------------TTTTGAGTGTTTGCATGTGTAC------------ctatgaatttttc----aaaacgaaatttt----gtttCCCTTCAGAAGCCATG
i caeRem4.Crem_Contig196 C 0 I 28
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I

a score=0.000000
s ce10.chrX              1604325 33 + 17718866 TTTTTTCATATTTGGTCTCCAAACTCCTTACTT
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I
e caeRem4.Crem_Contig196  163792 28 +   199417 I

a score=333.000000
s ce10.chrX              1604358 322 + 17718866 CACCACTCCCCCCCCCCCA----CAAAATTGCGTTTCCACTTTCCTCCGAGCACCTTTTGCTCCATTTTTAGGTGCTCTTTTT----GTGTTTGTGCTCGGTGA--AAAAGTACACCTTGTTCACC--------------------AAATGTTTCGCT-----TTACTTTTGACA-----------GCACATTTTGTGTTCGCCTGGCAT--ATCGCCCGT-----CATACCCCGCTCCACTTTG-----ACAAATT----TCCAAAATAATTTTTC---------AATTG--AAGCTCGCCGGCCGAGTTCTTTCCCTCTTTTCCCTTTTCTGA--AAAGTTCAATTTCGC-ATATTAGAGAGCGCTGAACAAATTT---TTGCTCGAATTCGTCTTCTA
s caeRem4.Crem_Contig196  163820 390 +   199417 CACCACTTCCGCGGCCACGAACCTAAAATTGCgtttccactttt-tcccaCCACCTTTTCCGTTATTCCT---TGCtcttttcccgcatttttttgttcaaatatGAAAAGT-CactttgtgcactttttcttgcagaaatacttgaaacttttttctgaatttgatttttttcaatgactaAAACGCtccttttgtgaaaaattaggATTTATTGCACGGACATATATATTCTCTTCAATTGTATTACCACACACTCTTCtctaaaccaatttttttttcaccgtAGTCGTCAAGCCGGC--GCCGA---CTCTGCCGTCTCCGCCAAATCTGATAAGAGTTCATTCCAGCTGGATTTGATCTCA-TGAACACATTCGCCTAGCCGCCATATATACACTA
i caeRem4.Crem_Contig196 I 28 C 0
e caePb3.Scfld02_133       37630 1424 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I
e caeSp111.Scaffold514    132515 507 +   141934 I

a score=14134.000000
s ce10.chrX              1604680  97 + 17718866 CCCGGCACTGCCAGGGCTTATGAGCTCATGAGCAGGGCTCTTTTCCGT----GCTC---TCTCACA-----CTTCTAGAACTCACC-GTTGCTAATGGTGATAATTCCAT
s caeRem4.Crem_Contig196  164210 101 +   199417 CCCGGCAGTGCCAGGGCTTATGAGCTCACAGCCGGGC----TGTGAGCCGGGGTCGTGAGCTGGTG----GGGGCTCTATTTCACC-GTTGCTAATGGTGATAATTCCAT
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    133022 100 +   141934 CCTGGCACTGCCAGGGCTCGAAAGCTCACCAGCCAAC--GCTGTGTGT----GCCG---TCCGACA-CGCACGCTTCTATTTCACTGGTTGCTAATGGTGATAAATACAT
i caeSp111.Scaffold514   I 507 C 0
s caePb3.Scfld02_133       39054  81 -   344637 CCTGGCACTGCCAGGGCT-----------------------TATGAGT----GTTG--AGCTGACAGCTCACAGCTCCGTTTCACCGGTTGCTAATGGTGATAATTCCAT
i caePb3.Scfld02_133     I 1424 I 720
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I

a score=-1299.000000
s ce10.chrX              1604777  7 + 17718866 ----CCAGCCG----
s caeRem4.Crem_Contig196  164311 15 +   199417 ATGGGCTGGTGGCCC
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    133122  7 +   141934 ----TTTGACG----
i caeSp111.Scaffold514   C 0 I 439
e caePb3.Scfld02_133       39135 720 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I

a score=-1751.000000
s ce10.chrX              1604784 30 + 17718866 CG------------------GCTCACGGAGCT------CTCGGCTAA--------------------------------------------TGGGTTG
s caeRem4.Crem_Contig196  164326 98 +   199417 CGTTTTGACTGCTTTGGAGAGCTCCTAGAGCTTCACACCTCTGGTGGCAGTACATACATAGTGGAGGTGGATTTTATAGGACTTCCTCGTTTGGATTA
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       39135 720 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e cb4.chrX                752749 215 + 21540570 I
e caeSp111.Scaffold514    133129 439 +   141934 I

a score=248.000000
s ce10.chrX              1604814 13 + 17718866 -TAAAATATGAACT
s cb4.chrX                752964 13 + 21540570 -TACAATATGAAGC
i cb4.chrX               I 215 C 0
s caeRem4.Crem_Contig196  164424 14 +   199417 TGACATTGAAATGT
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       39135 720 -   344637 I
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e caeSp111.Scaffold514    133129 439 +   141934 I

a score=847.000000
s ce10.chrX              1604827  83 + 17718866 ---------------TTTTGTTGATTTATATCTTATCTCCTTCTCTTTTCCTCACTTAA-----------------------------AAAAATTTCTGAAAACGCTGAAATTGCAGGTAATTCACA
s cb4.chrX                752977  92 + 21540570 TCCCTA----TAATTTATTTATCTTTTGTAGC----CTCTTGCTCCACTTACAACAACAGTTCTTTTATACTTT--------------AATAACTCTT-------------TTTCaggtaattcaaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  164438 114 +   199417 TTCTTAAtttcaatccgtttttcatttttctcatcacttttgctactcttcttactcttctcctttttcaaattctattcgttttctgaaaatttatt-------------ttgcaggtaattcaaa
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       39855  64 -   344637 ---------------ttttttccgtttgtaTC---TCTCTTTCTGACCCCAtaacc--------------------------------aaacattttt-------------ttccaggtaattcata
i caePb3.Scfld02_133     I 720 C 0
e caeJap4.Scaffold16506   106108 1312 +   115485 I
e caeSp111.Scaffold514    133129 439 +   141934 I

a score=-9923.000000
s ce10.chrX              1604910 23 + 17718866 CAAGA----GAGACAATTATTGCAATT-----
s cb4.chrX                753069 17 + 21540570 aagtatttca----aTAAGCT-----------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  164552 21 +   199417 aacaagcaGAAGACATCAACC-----------
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       39919 18 -   344637 taaaa--agaagacgtcagC------------
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   107420 22 +   115485 caaga----aataCATCACTG------AACTG
i caeJap4.Scaffold16506  I 1312 C 0
e caeSp111.Scaffold514    133129 439 +   141934 I

a score=124011.000000
s ce10.chrX              1604933 114 + 17718866 AATCATGGCGGATAGTCTTCTCGACAACTACAACCCGCTCTATGACATCCATCTCCGGCAGTACTTTGCGCTGCCGCACATGCAAAAACATCTGCAGAAAATGGGATTGGTAAG
s cb4.chrX                753086 114 + 21540570 AATCATGGCGGATAACCTTCTCGACAACTACAACCCACTTTACGACATTCACCTTCGTCAATACTTTGCTCTCCCGCATATGCAAAAACATCTGCAAAAAATGGGATTGGTGAG
i cb4.chrX               C 0 I 893
s caeRem4.Crem_Contig196  164573 114 +   199417 AACCATGGCGGATAGTCTTCTCGATAACTACAACCCTCTCTATGATATCCATCTTCGTCAATACTTTGCACTTCCCCATATGCAAAAACACCTGCAAAAAATGGGATTGGTGAG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    133568 114 +   141934 AAATATGGCGGAGAGTCTACTTGACAATTATAATCCACTTTATGATATTCATTTACGGCAGTACTTTGCTTTACCCCATATGCAAAAACACCTGCAGAAAATGGGACTGGTTAG
i caeSp111.Scaffold514   I 439 I 106
s caePb3.Scfld02_133       39937 114 -   344637 AACCATGGCGGATAGTCTTCTCGACAACTACAACCCCCTCTATGATATTCATCTTCGTCAATACTTTGCTCTTCCCCATATGCAAAAACACCTGCAGAAAATGGGACTGGTGAG
i caePb3.Scfld02_133     C 0 I 2742
s caeJap4.Scaffold16506   107442 114 +   115485 CAAAATGGCCGATAGTCTTCTCGACAACTATAACCCGCTTTATGATATTCATCTACGTCAGTACTTTGCGTTGCCACATATGCAAAAACACCTGCAGAAAATGGGATTGGTGAG
i caeJap4.Scaffold16506  C 0 C 0

a score=165.000000
s ce10.chrX              1605047 3 + 17718866 GAT
s caeRem4.Crem_Contig196  164687 3 +   199417 TAT
i caeRem4.Crem_Contig196 C 0 I 189
s caeJap4.Scaffold16506   107556 3 +   115485 TGT
i caeJap4.Scaffold16506  C 0 C 0
e caePb3.Scfld02_133       40051 2742 -   344637 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I

a score=336.000000
s ce10.chrX              1605050 36 + 17718866 TGGAAAATTTTTATGCAAAAAAAAAATTTGAAAAAA
s caeJap4.Scaffold16506   107559 36 +   115485 GAATATAATTTGAGAAGAAAGTAGAATACGAACAAA
i caeJap4.Scaffold16506  C 0 I 879
e caePb3.Scfld02_133       40051 2742 -   344637 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I
e caeRem4.Crem_Contig196  164690 189 +   199417 I

a score=0.000000
s ce10.chrX              1605086 962 + 17718866  
e caePb3.Scfld02_133       40051 2742 -   344637 I
e caeJap4.Scaffold16506   107595 879 +   115485 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I
e caeRem4.Crem_Contig196  164690 189 +   199417 I

a score=3771.000000
s ce10.chrX              1606048 136 + 17718866 GGAGCAAGTTTT-GTGACACCCTAGG--ATATTTCATCATAATTAAAGG-----AGAGGGGAAG--GGGTGCTGTGCAAAC-----GGCCTGGACATTACGAAGGGGG---------------CGCCTTTTAGGGACGGCCGAAATGTTGACACACGTGTTCAAAT
s caeRem4.Crem_Contig196  164879 165 +   199417 GGGACAAGTTTTTGTGACACCCCAGGGAATATGTCATCATAATTGAACGTTTTCGGGGGGCAAGCCAGCCACTGCGCAAACCTAGAGGaagggagaaaaagagaagggaagTGGTCAGCAAAACGC-TTTTAGGGACCCCGCAAATGTTTGTACACGTGTTCAAAT
i caeRem4.Crem_Contig196 I 189 I 641
e caePb3.Scfld02_133       40051 2742 -   344637 I
e caeJap4.Scaffold16506   107595 879 +   115485 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I

a score=0.000000
s ce10.chrX              1606184 3929 + 17718866  
e caePb3.Scfld02_133       40051 2742 -   344637 I
e caeJap4.Scaffold16506   107595  879 +   115485 I
e cb4.chrX                753200  893 + 21540570 I
e caeSp111.Scaffold514    133682  106 +   141934 I
e caeRem4.Crem_Contig196  165044  641 +   199417 I

a score=546.000000
s ce10.chrX              1610113 66 + 17718866 CTGGCCAATATAAGATTTCTAAGAACTTTGCTGATTTTTGAGCATTCCGTTCAAATTTCTCTCCC-------T
s caePb3.Scfld02_133       42793 71 -   344637 CTGGCTTACTCGCGAACTCGGAAAACAT--CTGATTTTAgaactctttcttctttttcctattcCAAAACGCT
i caePb3.Scfld02_133     I 2742 C 0
e caeJap4.Scaffold16506   107595 879 +   115485 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I
e caeRem4.Crem_Contig196  165044 641 +   199417 I

a score=3520.000000
s ce10.chrX              1610179 59 + 17718866 -------CAAAAAGT--GCACACATTCCCCAGTCCTCCTTCCTTTTTTCTCAGACAATTGTTCCCATT
s caeRem4.Crem_Contig196  165685 59 +   199417 -------caaaaaGTGCACAGACATATCCTATT-CTTTGTCCTCTTCGTTAAAAACATTGTTC-CATT
i caeRem4.Crem_Contig196 I 641 C 0
s caePb3.Scfld02_133       42864 68 -   344637 CAAAAACCAAGATAAAAGTACACATATCCCATTCCTCCTTCCACTTCTTTCTATTCTTTGTTCACATC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   107595 879 +   115485 I
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I

a score=600.000000
s ce10.chrX              1610238 1 + 17718866 G
s caeRem4.Crem_Contig196  165744 1 +   199417 G
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       42932 1 -   344637 G
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   108474 1 +   115485 G
i caeJap4.Scaffold16506  I 879 C 0
e cb4.chrX                753200 893 + 21540570 I
e caeSp111.Scaffold514    133682 106 +   141934 I

a score=596.000000
s ce10.chrX              1610239 3 + 17718866 TTA
s cb4.chrX                754093 3 + 21540570 ttc
i cb4.chrX               I 893 C 0
s caeRem4.Crem_Contig196  165745 2 +   199417 -TT
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       42933 2 -   344637 -TT
i caePb3.Scfld02_133     C 0 I 20
s caeJap4.Scaffold16506   108475 3 +   115485 TTC
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    133682 106 +   141934 I

a score=98561.000000
s ce10.chrX              1610242 89 + 17718866 CAGCTGGAGTCAACGCTCAACTTGAATGGCGAAGAAGTGTACGCGCGTCACCACGCCATGATGGACATGATGCTCAAGAACAGGTTGGG
s cb4.chrX                754096 89 + 21540570 tagctGGAGTCCACGCTCAACTTGAATGGAGACGAAGTTTACGCGCGCCATCATGCTATGATGGACATGATGCTCAAGAACAGGTTGGG
i cb4.chrX               C 0 I 23
s caeRem4.Crem_Contig196  165747 89 +   199417 CAGCTCGAGTCGACGCTCAATTTGAATGGCGACGAAGTCTACGCGCGTCACCACGCCATGATGGACATGATGCTCAAGAACAGGTTCAG
i caeRem4.Crem_Contig196 C 0 I 24
s caeSp111.Scaffold514    133788 89 +   141934 caGCTAGAGTCAACGCTCAACTTGAATGGCGATGAAGTCTACGCGCGCCATCATGCCATGATGGACATGATGCTCAAAAACAggtttca
i caeSp111.Scaffold514   I 106 I 14
s caePb3.Scfld02_133       42955 89 -   344637 CAGCTGGAGTCTACGCTCAACTTGAATGGCGACGAAGTCTATGCGCGTCACCACGCCATGATGGACATGATGCTCAAGAACAGGTTcgg
i caePb3.Scfld02_133     I 20 I 16
s caeJap4.Scaffold16506   108478 83 +   115485 CAGCTCGAGTCAACCCTCAACTTGAATGGCGACGAAGTCTACGCTCGCCACCACGCAATGATGGACATGATGCTTAAAAACCG------
i caeJap4.Scaffold16506  C 0 C 0

a score=0.000000
s ce10.chrX              1610331 28 + 17718866 GGGAATTTTCAGCCAAATTCTTTTAGCC
e caePb3.Scfld02_133       43044 16 -   344637 I
e caeJap4.Scaffold16506   108561  0 +   115485 C
e cb4.chrX                754185 23 + 21540570 I
e caeSp111.Scaffold514    133877 14 +   141934 I
e caeRem4.Crem_Contig196  165836 24 +   199417 I

a score=123890.000000
s ce10.chrX              1610359 182 + 17718866 AAATTCCAAAAAAACATATTTTTTTAGAGAAGCACAGCTCATGAAAATGGCCGAGTTGCGCAAGAAGCTTGACGCGGCGGAGAAAGTCGAGTGCTGCCGTCGTATTCGTACAGGTCAGAGTCCGGAATCCTACAGACAGGGAAAGCCGAGCCGCAGTTTGAGCAGAAGTGGGTGAAGTTTGT
s cb4.chrX                754208 171 + 21540570 -GAGATCCGATAATTA--------CAGAGAAGCTCAACTGGTAAAAATGGCGGAGTTGCGCAAAAAGCTGGATGCCGCGGAGAAAGTGGAGTGCTGTCGTCGTATTCGCACCGGCCAAAGCCCGGAGTCGTACCGCCAAGGAAAACCCAGTCGCAGCCTCAGTAGAAGTAT--AAATAATAT
i cb4.chrX               I 23 I 2
s caeRem4.Crem_Contig196  165860 175 +   199417 AGAAagtaaataatta----ttt-tagaGAAGCACAACTTGTCAAAATGGCTGAATTACGCAAGAAGCTTGACGCCGCCGAGAAGGTTGAGTGTTGCCGACGCATTCGGACCGGTCAAAGCCCAGAGTCATACCGTCAGGGAAAACCGAGCCGAAGCTTGAGCAGAAGTGA--GAATCTTat
i caeRem4.Crem_Contig196 I 24 I 26
s caeSp111.Scaffold514    133891 171 +   141934 CCGTTAGCAAAAATTA----ATTGCAGAGAAGCTCAATTACTGAAAATGGCAGAGTTGCGCAAAAAGCTTGATGCCGCCGAGAAGGTTGAGTGTTGCCGTCGTATACGTACTGGTCAGAGTCCTGAATCATACCGGCAGGGAAAACCAAGTCGCAGTTTGAGTAGAAGTag--taat-----
i caeSp111.Scaffold514   I 14 C 0
s caePb3.Scfld02_133       43060 167 -   344637 gaatttcaaatgataa----tTTCCAGAGAAGCACAGTTAATGAAAATGGCTGAGTTGCGCAAAAAGCTGGACGCCGCTGAGAAAGTCGAGTGTTGCCGTCGTATCCGGTCTGGTCAGAGCCCTGAATCCTACCGTCAAGGAAAACCGAGTCGCAGTTTGAGCAGAAgtaa-----------
i caePb3.Scfld02_133     I 16 C 0
s caeJap4.Scaffold16506   108561 150 +   115485 ---------------------------AGAAGCTCAACTACTGAAAATAGCCGAGCTTCGCAAAAAGCTCGACGCAGCCGAGAAAGTTGAGATTTGTCGTCGCATCCGCACTGGTCAAAGTCCAGAATCTTATCGGCGTGGAAAACCGAGTCGTAGTTTGAGTAGAAGTATGTGCAT-----
i caeJap4.Scaffold16506  C 0 C 0

a score=-5833.000000
s ce10.chrX              1610541 26 + 17718866 AAGAGCTCACCGAA------------AAAAAAAGCAAT----
s cb4.chrX                754381 30 + 21540570 caaaacacagaaaatatg--------aattaaTATCAT----
i cb4.chrX               I 2 I 1
s caeSp111.Scaffold514    134062 26 +   141934 tgaatttcaacaaa------------aagcaaaaaaac----
i caeSp111.Scaffold514   C 0 I 2
s caePb3.Scfld02_133       43227 35 -   344637 -gaacttcaaaaaatttaggaccactaa--aacaaaat----
i caePb3.Scfld02_133     C 0 I 2
s caeJap4.Scaffold16506   108711 34 +   115485 CATTGTTCAACATGTGTA--------ACAACAAATCACTTAT
i caeJap4.Scaffold16506  C 0 C 0
e caeRem4.Crem_Contig196  166035 26 +   199417 I

a score=137577.000000
s ce10.chrX              1610567 184 + 17718866 TTTCAGATCGCGCAGGGCAGAG------CGGGGGCGGAGGACGGCAACGTCGGTATTCCAACAGTTTTGAGGATCGCGATTTTGTTCAACGCATCGAAGATCGGAATACGGACCCCGTGGAACAGAACACCAAGGATCCGTACAAAAGATTGTCGGCTAATGCGAAGAGGTTCAATTATTTGCACAAGGT
s cb4.chrX                754412 190 + 21540570 TTCCAGATCGTGCTGGACAGAAGAGCAACGGCAGTGGCGGCCGGCAGCGCCGGTATTCTAACAGTTTCGAAGATCGGGACTTTGTCCAACGAATCGAAGAGCGCAATGCTGATCCATTGGAGAGCAATACCAGAGATCCATACAAAAGATTATCAGCAAACGCTAAGCGTTTCAACTACTTGCATAAAGT
i cb4.chrX               I 1 I 56
s caeRem4.Crem_Contig196  166061 190 +   199417 TTTTAGACCGTGCtggacaaaaaaataatagcaGTGGTGGTCGTCAACGTCGCTTCTCAAACAGCTTTGAGGATCGGGATTTTGTTCAAAGAATTGAGGAGCGAAATACTGATCCGGTGGAGCAAAACACACGTGATCCATACAAGAGATTGTCAGCAAATGCAAAACGATTCAATTATTTGCATAAGGT
i caeRem4.Crem_Contig196 I 26 I 66
s caeSp111.Scaffold514    134090 187 +   141934 GTTTAGATCGAGCTGGACAGAAAAA---TGCATCTGATGGTCGTCAGCGCCGTTATTCAAATAGCTTTGAGGACCGTGATTATGTGCAACGAATCGAAGAGCAGAATTCGGACCCAATGGATCAGAACACTAAAGATCCGTATAAGAGATTGTCTGCAAACGCTAAACGATTCAACTACTTACATAAAGT
i caeSp111.Scaffold514   I 2 C 0
s caePb3.Scfld02_133       43264 187 -   344637 ttgtaGACCGTGCCGGACAGAAAGG---TGGAAGTGGTGGTCGTCAACGTCGGTATTCCAACAGTTTTGAGGATCGCGACTATGTTCAACGTATCGAGGAACTGAACGCGGATCCGGTGGAACAAAACACCAGAGACCCATACAAGAGATTGTCAGCTAATGCGAAGAGATTCAACTATTTGCATAAGGT
i caePb3.Scfld02_133     I 2 C 0
s caeJap4.Scaffold16506   108745 190 +   115485 TTCAAGGTAGAGCTAATCAAAAAGGAGGAATGGGAGGAGGTCGTCAAAGGCGATTCTCCAACAGCTACGAAGATAGAGATTTTGTACAACATATAGAGGaaaaaaaCGTGGATCCGGATGACTATGACACCAGAGATCCGTATAAAAGACTCTCCGCGAACGCCAAACGTTTCAACTACCTGCATAAGGT
i caeJap4.Scaffold16506  C 0 C 0

a score=-3959.000000
s ce10.chrX              1610751 12 + 17718866 ---ACAGTTGATCAA
s caeSp111.Scaffold514    134277 10 +   141934 ---AAAT--GATTAA
i caeSp111.Scaffold514   C 0 I 27
s caePb3.Scfld02_133       43451  6 -   344637 ---AAGG--AA----
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   108935  5 +   115485 GCCAA----------
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                754602 56 + 21540570 I
e caeRem4.Crem_Contig196  166251 66 +   199417 I

a score=-62.000000
s ce10.chrX              1610763 6 + 17718866 GAACTT
s caePb3.Scfld02_133       43457 6 -   344637 GAGTGG
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   108940 6 +   115485 TAACTT
i caeJap4.Scaffold16506  C 0 I 26
e cb4.chrX                754602 56 + 21540570 I
e caeSp111.Scaffold514    134287 27 +   141934 I
e caeRem4.Crem_Contig196  166251 66 +   199417 I

a score=-2734.000000
s ce10.chrX              1610769 433 + 17718866 GGATCATCATATCCTACGGATTTTCGTTTTGACCTTTGCGCTGCCTATCATTACTT-ATAtcactacttatatataaaaaatagtgtgggtctgtccatagtttgtagtctatgtagtcttcgtagtgtgcaaagttttggcttatgaagggatattggtttagtgttagcgggggatatggtcggggtgctggagtagtactgtagaggtattgtaggagtactgtaggattactgtagtttaggaaaaattgagttttttgtcttttaaagggatattggttaagggttagtgccggaacatgaccgggtactgtagtagtactgtagaggtactgtaggagtactatagaggt-actgtaggagt----------------actgtaggattactgtagtttaggaaaattgagtttttgtcctttgaagggatattggtttagggtt
s caePb3.Scfld02_133       43463 285 -   344637 GGGCCGACCTA--------------------------GTACTGTATGTCAGAgcttcatatc---------------------------------------tcggttgcctttggaagtattgaa------aaagggtcaactaatgaaa-------tgtttagc----------AAAACGGTTTGagtattttactagt----taaatgttttttgatagc------------------ttcaaaaataactGAGAT-----------------ATGTTG-------------------ACCTGACCATACAGTGTTG------TGTAGGCATCTATTATGAGTA----AACGGTAACTAGAGGAGTTTGAACCCCGGGCTTAACTGTAGGGTTACTTCAAATTA--ACAagtgaatgtttttctt--------aGGTTGGCTTAAAATT
i caePb3.Scfld02_133     C 0 I 72
e caeJap4.Scaffold16506   108946  26 +   115485 I
e cb4.chrX                754602  56 + 21540570 I
e caeSp111.Scaffold514    134287  27 +   141934 I
e caeRem4.Crem_Contig196  166251  66 +   199417 I

a score=0.000000
s ce10.chrX              1611202 122 + 17718866 agtgccggaacatgaccgggtactgtagtagtactgtagaggtactgtaggagtactatagaggtactgtaggagtactgtaggattactgtagtttagggaaaattgagtttttgtctttt
e caePb3.Scfld02_133       43748  72 -   344637 I
e caeJap4.Scaffold16506   108946  26 +   115485 I
e cb4.chrX                754602  56 + 21540570 I
e caeSp111.Scaffold514    134287  27 +   141934 I
e caeRem4.Crem_Contig196  166251  66 +   199417 I

a score=-146.000000
s ce10.chrX              1611324 193 + 17718866 gaagggatattAGGTTGTATTCttcctgtgaaaagtttttaagc-------------gggaaattcagatttt---ctgaaaaacgt----tttagg---gggaaatttaaattttctgaaaaaaaacaatttc-------tagagatatttggaaagttctagaattttctagaaaaatcagaaaatttcaaaaaaaattttatagaaaaatctggaaaatt
s caePb3.Scfld02_133       43820 217 -   344637 AATGGGACCTCAGATGTTGCGATTTCAGATAAGGATTTCCAGACTTACAGAACTCAGTGGAAACTGAGAATTTAAGATTAGAAACATTTACttttggtccaaaaaattcaaatataacATGCCATCTCAATTTCATCATGGTTGTGACAGCCCGGATGCCCGCAAGGCTCGCAAAagtaccgcgaattttgaaaaag------ctaaaaaaaattccaaaatt
i caePb3.Scfld02_133     I 72 I 176
e caeJap4.Scaffold16506   108946  26 +   115485 I
e cb4.chrX                754602  56 + 21540570 I
e caeSp111.Scaffold514    134287  27 +   141934 I
e caeRem4.Crem_Contig196  166251  66 +   199417 I

a score=0.000000
s ce10.chrX              1611517 183 + 17718866 ttagaattttctaggaagatctggaaaatttaaaatgttcttgaaggtccgcaaaaCTCCAGGATAATATGTAACCGTACAAAAAGCACAGGGAACTCTGTTATTACTTCAAAACTTCATAGACCTTAGATTTTGTGCTTCCTAGGCTACCTGGGCTTACCTGGCTTAAACTGCAAATCACCA
e caePb3.Scfld02_133       44037 176 -   344637 I
e caeJap4.Scaffold16506   108946  26 +   115485 I
e cb4.chrX                754602  56 + 21540570 I
e caeSp111.Scaffold514    134287  27 +   141934 I
e caeRem4.Crem_Contig196  166251  66 +   199417 I

a score=165.000000
s ce10.chrX              1611700 9 + 17718866 TAACTACTC
s caePb3.Scfld02_133       44213 9 -   344637 caaaaactt
i caePb3.Scfld02_133     I 176 C 0
e caeJap4.Scaffold16506   108946 26 +   115485 I
e cb4.chrX                754602 56 + 21540570 I
e caeSp111.Scaffold514    134287 27 +   141934 I
e caeRem4.Crem_Contig196  166251 66 +   199417 I

a score=242.000000
s ce10.chrX              1611709 2 + 17718866 -AT
s cb4.chrX                754658 2 + 21540570 -at
i cb4.chrX               I 56 C 0
s caePb3.Scfld02_133       44222 3 -   344637 tgt
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   108946 26 +   115485 I
e caeSp111.Scaffold514    134287 27 +   141934 I
e caeRem4.Crem_Contig196  166251 66 +   199417 I

a score=273.000000
s ce10.chrX              1611711 1 + 17718866 T
s cb4.chrX                754660 1 + 21540570 t
i cb4.chrX               C 0 C 0
s caeJap4.Scaffold16506   108972 1 +   115485 T
i caeJap4.Scaffold16506  I 26 C 0
e caePb3.Scfld02_133       44225 0 -   344637 C
e caeSp111.Scaffold514    134287 27 +   141934 I
e caeRem4.Crem_Contig196  166251 66 +   199417 I

a score=150574.000000
s ce10.chrX              1611712 163 + 17718866 TTCCAGCTCGACGACAACACCCTGATTGCCTACAAAGACAATCTGAAAAAGCAGCTGCAGCGCCTCGAGCGCTTCCGTGAGATCTCATTCGGTCCACACTCTGTCGCCCGGCAGCCACCGCCACAGCAAGCATCGTGGTTCTTCCGGCGAAGGTGAGTATTCT----
s cb4.chrX                754661 163 + 21540570 ttttagcttGACGACAGCACTTTGGTTGCTTACAAAGacaatctcaaaaaacaactTCAACGTCTCGAACGTTTTCGCGAGATTTCTTTCGGTCCACACTCGGTAGCTCGccaaccaccaccaccgcAAACTTCGTGGTTTTTCCGAAGAAGGTGAGAACACA----
i cb4.chrX               C 0 I 40
s caeRem4.Crem_Contig196  166317 163 +   199417 TTTTAGCTTGATGACAACACCCTTGTCGCTTACAAGGACAATCTCAAGAAACAACTGCAACGACTTGAGCGTTTCCGTGAGATCTCATTTGGTCCACATTCGGTTGCACGTcagccaccaccaccacaggCTTCGTGGTTCTTCCGACGAAGGTACgtgaaat----
i caeRem4.Crem_Contig196 I 66 I 1
s caeSp111.Scaffold514    134314 163 +   141934 TTTCAGCTTGACGACAAAACTTTAGTCGCTTATAAAGacaatcttcaaaaacaactgaaCCGTCTTGAACGTTTccgagaaatttcatttggtCCACACTCGGTTGTTCGACAGCCACCACCAGTACAAGCTTCATGGTTTTTCCGACGACGGTACGtcatca----
i caeSp111.Scaffold514   I 27 I 10
s caePb3.Scfld02_133       44225 163 -   344637 tttcagctTGATGACAACACCTTGGTCTCTTACAAAGACAATCTCAAGAAACAACTGCAACGCCTCGAGCGTTTCCGTGAGATCTCTTTCGGTCCACACTCGGTGGCCCGTcagccaccaccaccacaagcCTCTTGGTTCTTCCGACGACGGTAAGTCACCA----
i caePb3.Scfld02_133     C 0 I 10
s caeJap4.Scaffold16506   108973 167 +   115485 TTTCAGCTTGATGACAAGACTCTTGTTGCATACAAAGACAACTTAAAACTACAACTTCAACGTCTTGAGCGCTTCCGCGAGATCTCATTTGGCCCACATTCGGTTGCCCGTCAACCACCACCACTACAAACTTCCTGGTTCTTTCGACGAAGGTAAGCAAGCAGAAA
i caeJap4.Scaffold16506  C 0 C 0

a score=-14911.000000
s ce10.chrX              1611875 50 + 17718866 ---CAGTTGATA----TTCACGTTTTTT---------TT-----------CTATACATAGTTTAATTAATAATGCAC
s caeRem4.Crem_Contig196  166481 63 +   199417 ---tgatttttta--atcttaattttttt------tctctctctctctctctattcaGATTCTGTCTAGTTTAG---
i caeRem4.Crem_Contig196 I 1 I 4
s caeSp111.Scaffold514    134487 53 +   141934 ---caatttgtt----tactaattctgaa------aatt-----------ttatcaaGTGCTTCATTAATAGACCTG
i caeSp111.Scaffold514   I 10 I 52
s caePb3.Scfld02_133       44398 35 -   344637 ---C------------TTCAAATTCTATA------CCTC-----------CTGTTCAGATCATGATT----------
i caePb3.Scfld02_133     I 10 I 3
s caeJap4.Scaffold16506   109140 60 +   115485 cagcaattatttattttttgggctttGAAAGTGTGACTT-----------CTAT---GTGTATTACTAACGCAT---
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                754824 40 + 21540570 I

a score=-8371.000000
s ce10.chrX              1611925 26 + 17718866 CTTAATTTTAAAAATAGG------------TTAAAA----------------------AA
s cb4.chrX                754864 31 + 21540570 CTTCCCTTTGAAATTAAATtgat-------tcaaac----------------------at
i cb4.chrX               I 40 C 0
s caeRem4.Crem_Contig196  166548 30 +   199417 cttctctgaaaaaaccaa-aaat-------ttaaaa----------------------aa
i caeRem4.Crem_Contig196 I 4 C 0
s caeSp111.Scaffold514    134592 46 +   141934 CTT-------TGAACAAATTGTT-------TCAcacttttgaataatttctagggaatga
i caeSp111.Scaffold514   I 52 C 0
s caePb3.Scfld02_133       44436 24 -   344637 TTT-------AGaatagattttt-------tcataa----------------------aa
i caePb3.Scfld02_133     I 3 C 0
s caeJap4.Scaffold16506   109200 36 +   115485 --TTCATTTGTAATTCAGTTCGTACATACATTAAAA----------------------AA
i caeJap4.Scaffold16506  C 0 I 766

a score=-41339.000000
s ce10.chrX              1611951 108 + 17718866 TTGGTTCAGAT----------AGATTTTCGC---------------------------------------------TTCTAACTT-AACCGTTTTGCTTCTA-CATAATATCTTAAATTTCACAGCTAA--CAAACCTAATCTCATGCTTGAA------------------------------------------ATTCTCAAAA------ATCT------------
s cb4.chrX                754895 106 + 21540570 t---tttcgat----------acCTGTTAGT---------------------------------------------TTGATAGTTACACA--TACATATTGA----AGTATCGtgg-----aatattga--aaaact---tcaaCAGCTCAAA--------------------------------------GCAAAATATTAAAG------TTTCCAAACACAT---
i cb4.chrX               C 0 I 340
s caeRem4.Crem_Contig196  166578 153 +   199417 g---tttggcTTCTCTGACTAACCTTTTTGc---------------------------------------------ttctaattt-------ttgattttta----aatctC---------ACTGCTAA--CAACCCA-ATCACTCGCTTGAATACCCATCACCTATTTTGCAGAGTGTGAAACTGTACATGAAAAAGATTGAAACTGAGTTTTTCAAGTAGAA---
i caeRem4.Crem_Contig196 C 0 I 3
s caeSp111.Scaffold514    134638 182 +   141934 t---ctgaaat-------------tttttatcctAGAGAATTTTCATTACATATCCTCATAATTTATCCGGATTCATTCCAACTTCCAGAATTTAAcgtcaaaaaaaacaacaaaa----tagTCTTGTTGTGTACGC-ACGTTTTGAATGAA--CCCCTTATTCTTTCTTCGGA----------------AAAAACTAtggaaa------aactaaaacaCCGAGC
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       44460 107 -   344637 a---ctaacat-------------ttttcGC---------------------------------------------TTCTAACATCCAAAATCACACGCTGATCATAATAACCCGT----CACGCTTGT--ctaactt-gttttttgagtgaa--------------ttttca------------------------catggaaa------atttaaa--------t
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   109236 766 +   115485 I

a score=-31114.000000
s ce10.chrX              1612059 289 + 17718866 ---------------GTCTAG--AAGTTTTCCGTTTTGTT---AGCAAGGTTCAGTTGTTCGACTTGTCTT--CTCACTTTCTTAGAA----------------------TAGAGTTTCAATGTGAAATTCAT----GTATTAGTATATTGATTGTAGAATAA----TAATAATAAAT-----GCAAAAAATGC-----TCAATTCTCTA----------------------GAAGAATTACAATTCTGTA--GTTTTCTCCATAATTGAAAATTGTATCTTAGAACTAAATGTTTTGCAGCCGACATGTTGCGAGTCTGAGGC-----------------TTGTGAAGTGTCGGGTGCTAGATTATGAATTAATGTAACTTTCCAATTTAT
s caeRem4.Crem_Contig196  166734 295 +   199417 ---------------ATCTAG-AAAATGTTCTTCTCTGTT---AGCAAGGTTTagttgtttctcttcttct---tgaatttcttttcaattaggattttcaaactatt--ttccaTTATAAAATCACATCGA-----GTGTTCGGAACA-AAAGATAaagcaaaat-gaaaattcgaaagGGATCCAAATAAGA-----------------------TAAACAA--------CGAAAACAATTAGTTTG----ATCTACTATGTAGAAGACATTTGGACATTAAAACA-------TTGTGACATACAGATAGACATTTAGAAACATT--------------TGATAGAACATTTG----CACaatttgaattaattt------tcaatcTGA
i caeRem4.Crem_Contig196 I 3 C 0
s caeSp111.Scaffold514    134820 375 +   141934 TACTGTTGATGTTTTCTTTAG-TTTGAGAATCCTGCTACTAACAGTAAGATGTA--TTTCTGACACTTTCCGTCTGGATTTATGTTAA--CAAGGTTTGGTAGTTTTTCGTTCTGGTTTTATGTGACATTTT-----ATCCTAGAAGCATGCAAATGAAATGAGTTTGAATATCTAATactaattgaaaattttaatcgttaattttttactttgttcaaacatttttcgcGTGAAAATGAGTTCACTATActgtcttttttgaaacttaaaTTTCTT-ATTGACATGAATTTTCTTGTTACTAACAACTCTAAATCCCGGCCCTTTGCACGTATTGTAAATCATGGGAAGTAAT----CATTTTAAGAAACAATCC--TTTTTTAATATAT
i caeSp111.Scaffold514   C 0 I 214
s caePb3.Scfld02_133       44567 256 -   344637 ttctaATAGTTTTCTATCTAGAAATGTAAACctttttgtt---agcaaggtttagttttcttctactttca------------------------------------tcgttcttttttagtagtagatttttcCAGCTCCTAAAAAACTCGAGatga---------gaaaattcatt-----ttggaaaatgc--------------------------------------tgaaaatgataaaacta----gccaaatttgaaaaaaaaattaatt--ttgaaata---tttttcaatacacACATCTCCAATTCCCGAATC-----------------TCACAGCAGCTAGG----CTCTAcaaaattgaaacc---------------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   109236 766 +   115485 I
e cb4.chrX                755001 340 + 21540570 I

a score=-4793.000000
s ce10.chrX              1612348 45 + 17718866 CTCTTATATTCTATGTATAGG----------------------------------AAAATAATTCATGATTCGCAAAA--C
s caeRem4.Crem_Contig196  167029 79 +   199417 CTCTCTCAGATAATGCTCAACCTTACATATCCTTTCTGATTTATagcttcttttgaaaatttctaa-aattttctaaaat-
i caeRem4.Crem_Contig196 C 0 I 4
s caePb3.Scfld02_133       44823 20 -   344637 -------------------------------------------------------aaaaaacct---aatCCCCTAAA---
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   109236 766 +   115485 I
e cb4.chrX                755001 340 + 21540570 I
e caeSp111.Scaffold514    135195 214 +   141934 I

a score=-6690.000000
s ce10.chrX              1612393 95 + 17718866 CCTTCCTAATCTGTGTTGTGATTGTGctctctttctctctctctctctcactctctttcactctctATTAATTCCTCTTGTAAGGTAT---CGAACTC-
s cb4.chrX                755341 61 + 21540570 CATTACTAATTT-GGTTG----AGTTTCAGTTTCCTTTATT----------TGTTTTT-----------------------AAcagattttgacatttt
i cb4.chrX               I 340 C 0
s caeRem4.Crem_Contig196  167112 86 +   199417 cATCCCTACTT---GTTGTCATTgtatcatcttcttcttttcct-----actGTCTTTC-----CTATAACCAATTCTCAAACCATATTTATATGGTTT
i caeRem4.Crem_Contig196 I 4 C 0
s caePb3.Scfld02_133       44843 78 -   344637 -------------TGTCGTAATTGTGTCAGTTATCTCTGTTCCA-------TACCTTCTACTAACCATtttaacttccaaaaaaatggtttcgaacTC-
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   109236 766 +   115485 I
e caeSp111.Scaffold514    135195 214 +   141934 I

a score=434.000000
s ce10.chrX              1612488 7 + 17718866 CCAAATC
s cb4.chrX                755402 7 + 21540570 ccaaata
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  167198 5 +   199417 CCCA--A
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135409 7 +   141934 CTCAATA
i caeSp111.Scaffold514   I 214 C 0
s caePb3.Scfld02_133       44921 4 -   344637 ---AATA
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   109236 766 +   115485 I

a score=80098.000000
s ce10.chrX              1612495 91 + 17718866 TTCAGGTCGCTACCTAGTCTGACTGCTTCAGCTCCCGGAAATACCCTGAAAGAGCCGTTGAGGTACTAATATATAGCCAGAGTCCT-TGTCC
s cb4.chrX                755409 90 + 21540570 ttcagGTCACTACCTAGCCTGACTGCTTCAGCTGGTGGAACTGCCCTGAAAGAGCCACTAAGGTACTAACAAAC--TTAAAGTTTTCTGTCC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  167203 86 +   199417 TTCAGGTCGCTACCTAGTCTGACTGCTTCAGCTCCCGGAAATACCCTGAAAGAGCCGTTAAGGTACTAATACCC-----GAGTCCT-TGTcc
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135416 86 +   141934 TTCAGATCATTACCTAGTCTGATTGCTTCAGCTCCCGgaaattctttgaaagaTCCATTGAGGTACTTTTACTC-----GAGTTTT-TGTCC
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       44925 87 -   344637 TTCAGGTCGCTACCTAGTCTGACTGCTTCAGCTCCCGGAAATACCCTGAAAGAGCCGTTAAGGTACTAATACCC----AAAGTCCT-TGTcc
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   110002 84 +   115485 TTCAGATCGCTTCCTAGTCTGACTGATTCGGCTCCCGGAAAATCTCTAAAAGAACCGTTAAGGTACTGGTAATA-------GTTTT-TGTCC
i caeJap4.Scaffold16506  I 766 I 575

a score=-24740.000000
s ce10.chrX              1612586 212 + 17718866 CAAGGTTTTC--------GAGCTGAAAACTCTGCCTTTGTGAAATTCGATATTACTTCTACTTGTAGTGTTGATATATCATGGt-----------tttttattttta-------------------------------------------tt--------------ttttttGTCCCTTACTTGTGGTT--------ATGATATCAACA-----------CCGCAATAATCTATCCTTTCATCGT------GATCGTGTGCTCCTTTAAAC-TCTATACCTTGGTTTTT--CATTTGATTTTTACTTA---TTAAGCTT----
s cb4.chrX                755499 256 + 21540570 CAAGTCT----------------------------TTTGTGACATC-TGTCCCTTTTCAATT--GAATGTTAACCTTT-----TgcatattttaattttcgtcTACACCGACACCAAACTGTTACAACTGAAAACGAACATGTcctaacttttccaaaaaattgttttcattgTTCT--------TTTTGGATTCGGGTATCGTTTGCTTCCAGTTTCAACAGCTA-TCTAT---CTGCATATGT------GGTTGTGAACTCCTACAAAATCCTATCCCTtggttctg---aat---ttctcatttt---ttaaagtt----
i cb4.chrX               C 0 I 733
s caeRem4.Crem_Contig196  167289 202 +   199417 --agttttta----------aaagaaaa-----gcTTCGTGACACCATGTCCTTCTTCTACTTGGAGTGTTGatccct-----t-----------ttttcttgtcca-------------------------------------------ttttcaaaaaacagagcTAATTGGACA--------GGTT--------GTTTTATTAGCT-----------CTGTTA-TTTCTATCCTTTACTTGT------GATTGTGTGCTCCTATAAGA-CCTATTCCTTGGTTCCGT-TACT---TTCCTATTTTA--ctaaaacc----
i caeRem4.Crem_Contig196 C 0 I 25
s caeSp111.Scaffold514    135502 169 +   141934 CAATATATAA---------------------------------GTTCCATCCTTCTCCAATTTGGAATGCTAATcctc-----t-----------tttctatttgtg-------------------------------------------CTT------------GATTACTGTGCT------ATGATT--------TTGTAA-----------------CGTCTG-ACATTTACTTGTGGTTGTGCTTTCAATCA-----------ATGA-CTAATTTTTAGGTCTTTTCCACT---TCCTGATTTT---TGATACTTAGCT
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       45012 196 -   344637 caagttttcatttttcttaaatggaaaa-----aatgaaaaccgcTTTGTCCATCTTCTACTTGGagtgt---tttcc-----t-----------tttttctttgtc-------------------------------------------ct--------------attactgta----------gttt--------gtgcTA-----------------CAGTTG-ATTCTATCCTTTACTCGT------GATTGTGTGCTCCTATAAGA-TCTATACCTTGgttcagtttatt---ttcaaattttaactttttcattACT
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   110086 575 +   115485 I

a score=3154.000000
s ce10.chrX              1612798 10 + 17718866 CTTGAAAGGC
s caeRem4.Crem_Contig196  167516 10 +   199417 TTTAAAAGGC
i caeRem4.Crem_Contig196 I 25 C 0
s caeSp111.Scaffold514    135671 10 +   141934 TTTGAAAGGC
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       45208 10 -   344637 CATGAAGGGA
i caePb3.Scfld02_133     C 0 I 21
e caeJap4.Scaffold16506   110086 575 +   115485 I
e cb4.chrX                755755 733 + 21540570 I

a score=1757.000000
s ce10.chrX              1612808 14 + 17718866 TTTTGCTTCTCTCG
s caeRem4.Crem_Contig196  167526 14 +   199417 TTCTGCTTCTACCT
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135681 14 +   141934 CTCTGCTCCTACTC
i caeSp111.Scaffold514   C 0 C 0
e caePb3.Scfld02_133       45218 21 -   344637 I
e caeJap4.Scaffold16506   110086 575 +   115485 I
e cb4.chrX                755755 733 + 21540570 I

a score=-1706.000000
s ce10.chrX              1612822 19 + 17718866 --------ATATCAAAATTTCAGCACG
s caeRem4.Crem_Contig196  167540 27 +   199417 ATAGCTTCTACCTATAGTTATACTACA
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135695 18 +   141934 ---------AAATctattttccttttg
i caeSp111.Scaffold514   C 0 I 67
s caePb3.Scfld02_133       45239 19 -   344637 --------aaactggaatttcaattcg
i caePb3.Scfld02_133     I 21 C 0
e caeJap4.Scaffold16506   110086 575 +   115485 I
e cb4.chrX                755755 733 + 21540570 I

a score=-1955.000000
s ce10.chrX              1612841 21 + 17718866 ATAATACCTGATTTCTTTTTT------------
s caeRem4.Crem_Contig196  167567 26 +   199417 -------ATGTTttaaaatctgcaaaaatacTA
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       45258 28 -   344637 -----aaattttttcatttccgctGAATCATCC
i caePb3.Scfld02_133     C 0 I 2
e caeJap4.Scaffold16506   110086 575 +   115485 I
e cb4.chrX                755755 733 + 21540570 I
e caeSp111.Scaffold514    135713 67 +   141934 I

a score=-30683.000000
s ce10.chrX              1612862 164 + 17718866 TCTTTTAAGTTTCAT-----------------------------TTTTTATTCTCTTAGAAAT---------------------------------------------CAACAAAAAAAACT-----AACTTTATCACCAAATCGGCTCAAAATATTCA-------------------------AATTTTCA----------GCGCAGTTTT----------TTTTTTGTCTC----------------------------------------------------------ATTTGCAT---------TTCTGTGACTCCAGTAG-----------AGAATCTACTGCAATTTCAAACTTTAGCGC
s caeRem4.Crem_Contig196  167593 287 +   199417 ACTTTTGAGTTAAAA--------TGCACGAAATATATGTTTTAATTATATAACTATCA-AAATATCTCGAAATATATATTGATTTTCCAACAATCATTTCACTCTTTATATCACTAAACCCACTTTAAAATGC---ACCGAAACGGCTCGA---AACTAGAGAACTCATATTTaggaaaatacaaattttcgtcattgtcgctcgcattttttgca--ttccttttttgtttc----------------------------------------------------------attagctcattttttgattacgCGCCTTATGTGTCATTTCTCCGCTAAATGttatgaaacttcaaaaattg----
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135780 128 +   141934 TCTCTCAATTTCTAA-----------------------------------AACTCGTA-AAAT---------------------------------------------TATCACAACACGAGCACGAAGC------ACAAAAACGGCTTGATATATCAAAAGAAG-----ACTAAGAAA------------------------Ccaattcttctca------ttttttattcc---------------------------------------------------------------------------ttcTGTGCCTTACGTGT-----------------------------------------
i caeSp111.Scaffold514   I 67 C 0
s caePb3.Scfld02_133       45288 281 -   344637 TTTCTAGCTTCTTGAAAGGCTTCTGCTTCTAcctaatgttc--attttttaattcgCAGAAat---------------------------------------------taacaaacaaaaatcctgaaaattcag-aCCAAAATTGCAcgac-taacaaaaaaattcaacacaaagaaa-----aacttCTA----------TCCTATCCtatcaaaaacactttttttttccaaacacacacacacgaaCACCGTAAAATCACCGAAAACTTACAACAAAGCACTTAAAAAACGGCTCATAAAT--ATTCCgcattttctgcat---------------ttttgtgTCATTT----GATTGGCGC
i caePb3.Scfld02_133     I 2 C 0
e caeJap4.Scaffold16506   110086 575 +   115485 I
e cb4.chrX                755755 733 + 21540570 I

a score=1654.000000
s ce10.chrX              1613026 64 + 17718866 ------CTTAT----------GTGGTACGCATGTTTTGAGCCGGGCCCCCGTT--------CGACACCC--------TTTCTCAT-----CTATTTTCACT
s cb4.chrX                756488 63 + 21540570 ------CTTAT----------GAAATAAGCATGTTTCGAGCcg------cttttaaatttttgcagccttcttcatattttcttc----------------
i cb4.chrX               I 733 C 0
s caeRem4.Crem_Contig196  167880 60 +   199417 -------ttac-----------aGACGCGCATGTTTTGAGCCGGCGcc-cttttcattttccgacACCC------TATTTCTCTC----------------
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    135908 63 +   141934 -TTATGTCTAT--------TTGAAATGCGCATGTCTCAAGCCGG----------GTTTTTCCTAcacca--------tttctttttcacc-----------
i caeSp111.Scaffold514   C 0 I 45
s caePb3.Scfld02_133       45569 77 -   344637 CTTATGTGTATCGAATTCATAGAAATGCGCATGTTTTGAGCCGGtgccttttttttatttccgacaccc--------tttctctc----------------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   110086 575 +   115485 I

a score=2990.000000
s ce10.chrX              1613090 34 + 17718866 TTC-CCCAC-CCCCACCAGTGTAG-----------ATGATCGGAGCA
s cb4.chrX                756551 43 + 21540570 --TACACAAATCCCACCGATGTAGTACTTTTTATCAGTGTTTGAG--
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  167940 36 +   199417 --T-CACACTCCCCACCAGTGTTGCATTTT-----ATTGTTCGA---
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       45646 41 -   344637 tct-cacac-CCCCACCAGTGTAGCATTTTT----ATTGTTCGAGCA
i caePb3.Scfld02_133     C 0 I 35
e caeJap4.Scaffold16506   110086 575 +   115485 I
e caeSp111.Scaffold514    135971 45 +   141934 I

a score=-418.000000
s ce10.chrX              1613124 21 + 17718866 CACACACACCACTGCGGCTCC
s cb4.chrX                756594 18 + 21540570 ---ATgcacaactttttttca
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  167976 13 +   199417 -------ACAACTTCCATTC-
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       45687 35 -   344637 I
e caeJap4.Scaffold16506   110086 575 +   115485 I
e caeSp111.Scaffold514    135971 45 +   141934 I

a score=-5383.000000
s ce10.chrX              1613145  9 + 17718866 -AAATCTTCT-------------------
s cb4.chrX                756612 15 + 21540570 gtaatcAGATAA--------------CTA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  167989 27 +   199417 --CATCTGTTGGAGTTTTTGCTCATTcca
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    136016  7 +   141934 AAAACTT----------------------
i caeSp111.Scaffold514   I 45 C 0
e caePb3.Scfld02_133       45687 35 -   344637 I
e caeJap4.Scaffold16506   110086 575 +   115485 I

a score=-625.000000
s ce10.chrX              1613154 4 + 17718866 CGGC
s cb4.chrX                756627 4 + 21540570 CGAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  168016 4 +   199417 gtaa
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       45722 4 -   344637 TGGG
i caePb3.Scfld02_133     I 35 C 0
e caeJap4.Scaffold16506   110086 575 +   115485 I
e caeSp111.Scaffold514    136023 0 +   141934 C

a score=87599.000000
s ce10.chrX              1613158 159 + 17718866 TTTTCAGAAGTGTGCTCAATATGCGGGGACGTAAAGCAACTACCGGTAACAAGCTGAACGCGAGTCATGATAGTCGGACGAGTTGCCCACCAACTACTCGGAAGAGGAAGGGTTAGTTTTTGTAGTTTTTAGAAGTTGAGGTGAAGCGGCCGACATTTT
s cb4.chrX                756631 136 + 21540570 CTTTCAGGAGTGTACTAAATATgagaggaagaaaaacaaCAACTGGAAATAAGTTGAATGCGAGTCATGACAGTCGAACCAGCTGCCCGCCTACCACTAGGAAGCGTAAAGGT-----------------AAGAAATCGGGT------ACTGACAGTTT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  168020 125 +   199417 ttttcagaagtgtgCTCAATATGCGGGGAAGAAAAGCAACTACCGGTAACAAGTTGAATGCGAGTCATGATAGTCGTACGAGCTGTCCACCAACTACTAGAAAGCGTAAAGGT-----------------AAAA------TT------GCTGCC-----
i caeRem4.Crem_Contig196 C 0 I 25
s caeSp111.Scaffold514    136023 115 +   141934 ---TCAGAAGTGTGCTCAATATACGGGGACGTAAAGCAACAACCGGTAACAAACCTATTATAAGTCATGATAACAGAACAAGTTGTCCACCAACTACAAGAAACCGTAAAGGT-------------------TAGTT----------------------
i caeSp111.Scaffold514   C 0 I 24
s caePb3.Scfld02_133       45726 136 -   344637 TTTTCAGAAGTGTGCTCAATATGCGGGGACGGAAAGCAACAACCGGTAATAAGCTGAATGCGAGTCATGATAGCAGGACGAGCTGTCCACCAACTACAAGGAAACGTAAAGGT-----------------GGGAGTTTAGGG------ACTGGAGTCTT
i caePb3.Scfld02_133     C 0 I 1090
s caeJap4.Scaffold16506   110661 118 +   115485 TTTTCAGAAGTGCCCTGAACATTCGAGGACGCAAAACAACCACCGGTAACAAGTTGAATGCGAGTTATGACAGCCGTACTAGTTGTCCCCCAGCTGCTCGAAAGCGGAAAGGT-----------------GTgaa------------------------
i caeJap4.Scaffold16506  I 575 C 0

a score=-367.000000
s ce10.chrX              1613317 28 + 17718866 CTGAGCTGCAAAATGACGCCGCAAAGAT
s caeJap4.Scaffold16506   110779  8 +   115485 -------------------tgcaaaga-
i caeJap4.Scaffold16506  C 0 C 0
e caePb3.Scfld02_133       45862 1090 -   344637 I
e cb4.chrX                756767  0 + 21540570 C
e caeSp111.Scaffold514    136138 24 +   141934 I
e caeRem4.Crem_Contig196  168145 25 +   199417 I

a score=0.000000
s ce10.chrX              1613345 59 + 17718866 TATAAAATCCGCCTTCGACTGGATAGACTATTGTGGTTAGAGCTTTATACGGGATTTTA
e caePb3.Scfld02_133       45862 1090 -   344637 I
e caeJap4.Scaffold16506   110787  0 +   115485 C
e cb4.chrX                756767  0 + 21540570 C
e caeSp111.Scaffold514    136138 24 +   141934 I
e caeRem4.Crem_Contig196  168145 25 +   199417 I

a score=-2668.000000
s ce10.chrX              1613404 57 + 17718866 AATCTAAAATTTATGTTTCTGCTTGTTGAAAGATATGTAAAATCCCTAATAAATAGT
s caeSp111.Scaffold514    136162 17 +   141934 -------------------------Tttaaagaaacagaaaa---------------
i caeSp111.Scaffold514   I 24 C 0
s caeJap4.Scaffold16506   110787 14 +   115485 ---------------------------aaaaaacgtgcAAA----------------
i caeJap4.Scaffold16506  C 0 C 0
e caePb3.Scfld02_133       45862 1090 -   344637 I
e cb4.chrX                756767  0 + 21540570 C
e caeRem4.Crem_Contig196  168145 25 +   199417 I

a score=-8971.000000
s ce10.chrX              1613461 60 + 17718866 TCTAGTCCTCAATAGTTCATTCAATAGTCCTAGGTGCCAGGTGTCCAGTAATTGTACCAC
s cb4.chrX                756767 11 + 21540570 -------------------TCCAATCCCAC------------------------------
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold514    136179 38 +   141934 ---agagactaACAATTTGTTTAGAACTATTGG-------------------CAAACTAC
i caeSp111.Scaffold514   C 0 C 0
s caeJap4.Scaffold16506   110801 16 +   115485 TGCAagataaaataat--------------------------------------------
i caeJap4.Scaffold16506  C 0 C 0
e caePb3.Scfld02_133       45862 1090 -   344637 I
e caeRem4.Crem_Contig196  168145 25 +   199417 I

a score=422.000000
s ce10.chrX              1613521 1 + 17718866 T
s cb4.chrX                756778 1 + 21540570 T
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold514    136217 1 +   141934 C
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       46952 1 -   344637 t
i caePb3.Scfld02_133     I 1090 C 0
s caeJap4.Scaffold16506   110817 1 +   115485 t
i caeJap4.Scaffold16506  C 0 C 0
e caeRem4.Crem_Contig196  168145 25 +   199417 I

a score=163959.000000
s ce10.chrX              1613522 300 + 17718866 TTCCAGATTCCAACGGCCGACTTCCACCTATCAACCCAC---ATAAAAATCGGGTACCCACAAAACCACCAGCACCGGTCTCTCTTCAACAAATCACAACTCGACTTCCACCGGCGGCTAAAAAGTCAGAA-------------------AAACCTTAGAGAAATTCATCAA---ACAT-TTTATTTTCAGACCAGCACCCTCCCGTGGACGTCCATCGAACAAACGCCAAACAACTACGACTACTACGACTACAATCACATCGGTGTCAAAATCGCCGCAGATAT------CAGATACAAATACACTTCCAACACTGCCTTCGGTGACAGG
s cb4.chrX                756779 308 + 21540570 -TTAAGACTTCAACGTTCGACTTCCACCGATTCATCCACCCTCCAGGCAGTGGGTTCCTACCAAACCACCTGTGCCGGTCTCAATTCAACAAACCACCACCAAACTACCACCTGCTGCCAAGAAGTAAGAA----------T------TTATTCAAACACTCACCTACTATA---A----TATGATTTCAGGCCAGCACCAACCCGTGGGCGTCCTTCGACAAAACGCCAGACAACAACTACTACAATTACCACGGTCTCATCGGTGTCGAAATCCCCGCCTAAAGAGGATATAACTACAACAACACTTCCTACGCTCCCATCTGTGACTGG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  168170 311 +   199417 TTCCAGATTCTAACACTCGACTCCCACCTATCCACCCAA---ACAAGAATCGGGTTCCAACCAAACCACCAGCACCGGTGTCTCTTCAACAAATCACTACTAAACTCCCACCGGCAGCTAAGAAGTGAGAACACTGAGGACT------TCAGACAAA---------AGtata---aattttgtattttcagaccGGCACCAACTCGTGGCCGTCCTTCAAACAAGCGACAAACAACCACTACTACTACGACTACAATTACTTCGGTATCAAAATCTCCGCAGATATCAGATACAACTACAACTACACTTCCGTCACTCCCATCTGTGACTGG
i caeRem4.Crem_Contig196 I 25 C 0
s caeSp111.Scaffold514    136218 301 +   141934 TTTCAGACTCGAATACTCGACTCCCACCTATCAATCCTC---AAAAAACTCGATTATCAGCAAAGCCACCAATCCAAGCCGCTTTCCAACAAATTACTTCTAGACTTCCACCAGCAGCTAAGAAGTCAA------------T------TTTTACCAGTGAGAAATAGTTcta---aaac-tcttttttcagaccaGCACCTACTCGGGGACGCCCGTCGAATAAAAGACAGACTGCTACAACTACTAAGACTACAATTCCAGCTGTCtcaaaatatccaaaaatat------caaatgatACTAGTCTCCCTACTCTTCCATTAGTGACAGG
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       46953 309 -   344637 ttccagattccaacACGCGTCTTCCACCTATCCACCCAC---AAAAGAATCGGGTTCCAACCAAACCACCAGCACCGGTGTCTCTTCAACAAATAACCACTAAACTGCCACCAGCAGCTAAGAAGTAAA-------------------CAACACCAGAAATCACTGAATTTatacaaaa-tacattttcagaccGGCACCCACTCGTGGACGTCCGTCGAACAAGAGACagacaacaacaactacaaccACTACAATTACAGCTGTGTCGAAGTCACCGCAGATATCAAACACAAATACCACTACATTGCCGGCACTCCCATCTGTTACTGG
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   110818 300 +   115485 tttcagactCAAACACTCGGCTCCCACCGATTAATCCAC---AGAAGGCGCGAGTACCGGTCAAGCAACCAGTA---ATGAGTCTACAACAAACGACTACTAGACTTCCACCAGCAACTAAGAAGTATGAT----------TTAAATATTTGGtttaaaatcaacaaaactA---TATT-TATATTTATAGGCCAGCCCCGACTCGTGGACGACCATCTAACAAACGGCAAACAACTACAACTACGATGACTACAATCACTACAGATTCCAAATCACCACA-----------CAG-TATAACCTCTCTTCCCCCGCTTCCATCTATCACTGG
i caeJap4.Scaffold16506  C 0 I 235

a score=27652.000000
s ce10.chrX              1613822 398 + 17718866 TACGAAGAGGGGTCTTGACGTAAACAAGAATTTGCTATACTTGAA---------------AACAAACTATCTTTTTTGG--------GATCTTGAAAGA---A---------------------------------------------GTTGTCT--TTCCAGGTCGTGGAATCTTCACCGGTGCAGCGGCCGCCGCTACCGCCGCAGCCATCGGAACTGCAGCGATCAATATGGATACTTTGAT------TGAC------AAGGAGCCA------------GAGCCATCTCCACCCCGCACCCCTGTCCTGGAGACCCAGAAAACCTTCGATCGGACTTCTCCAACCGATGGTGTCCAAGTCCCTGATGAAGTACCACCTGAGATCCTTGACAAGCTGGCC---GACGAGTCTGAGGATGTGGAGGAGAAGCTCGCGGAGCAAGAGGAACAAGAGTTCATTCCGCGCCAAATTGTGCTGGATAATGCAGATCCT------TCT
s cb4.chrX                757087 349 + 21540570 TATG--G--------------------GATTTCGCTTTATCCAGAT---------------------GAATTTTCATCCC-------ACTTATTAAACA---A-GAAATACCG-----------------------------------ATTACTACATTTTAGGTCATGGAATCTTTACTGgcgctgctgctgctgctacCGCTGCAGCTATAGGGACCATTGCATTGAATGTGGAGGATTTAATTGCAAGCGAT---TCAGAGCAAACA------------------------------TCTCCAGTCTCAGAAATTAGAGGAACTCATGGTCGAAACTCTCCAGCTTAC------------ACTGAAACTATTCCAATAGATAATTCTCATGAGTTGGAG---GAATCCGCTGAAAAAG------------ATGTTGAGCAAGGGGAGGAGGAGCATGTCGTCCGTCAAATTGAAGCAATCAACGCAGCTAAC------ACC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  168481 438 +   199417 TACGTCT--------------------GATTATTGTTTATTGGTGTTT---------TCGAGTGTTAGACTTTTtatgaa-------agttctgaaaaa---acgaTATAACGTTGCGGATAGATAATGGGGAtcgtaaaatttttcaatgaacaGCTTTCAGGCCACGGAATCTTCACTGGAGCTGCTGCCGCGGCTACCGCTGCAGCTATTGGCACTGCAGCTATCAATATGGATGATCTTATTGGAATTGATGAGCCGGAGAATGTAGATGAGCCAGTGGAAGTCGAGAAGCCACGTTCTCCAGTTCTCGAGACCCAGAAGACTTTTGACCGTAGCTCACCAACTCAA------CAAGCGGATGAAGAGGTTCCAACTGATATCCTGGACAACTTGGCT---GACGAATCTGAGAAGG------------TTGCTGAGCAAGAGGAGCAAGAATTCATTCCTCGACAAATTGTTTTGGATAACACTCCAATC------AAC
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    136519 359 +   141934 TGAGTAT----------------------------------------------------------------TTCTGTGACATAACTCAATTATCATTCA---ACAATCTGAT------------------------------------ATTCTTTGG---CAGGACATGGAATTTTTACTGGAGCTGCAGCTGCTGCTATAACAGCAGCTATTGGAACTACTGAAATCAACATTGATCATTTATT---GAATGAT------GGACATTCAGAGGAGCATGGTGAACTTTCTCCGTCATATTTGCCTAATCTGGAAATACAAGAAACATTTGATCGCAAAACTTCA------------------AGTGATGACGTTCTTGACAAGATTCCATCTGATGTATCTATAGATTACTCTGTGGAAG------------TtgccaaaaaagaagagcaagaGCATGCGTCGCCTCAAAATGTTGTCGGTCGCACCTCTGTTCAAGATACT
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       47262 424 -   344637 TACGTTT--GGAATGGGGAGCAAGTCAGAAATTGAAGcacaaaaatctagaaaaaaaatgagaaaagggaCTTTTCTCGCTAAACTTGCTTTTTGCGCAtggaaaatctaat------------------------------------tttttcatgttccagGCCATGGAATCTTTACCGGAGCCGCTGCCGCTGCCACAGCCGCAGCTGTCGGAACTGCTGCCATAAATATTGATTCTCTGAT---CAATGAT------GAGCAACCAGAAGAGCAAAAGGAGCCAACTCCACCACGTTCCCCAGTACTTGAGACCCAGAAAACTTTCGACCGCTCATCACCA------------------ACTCAAGAGGTTCCAACTGACATTTTGGATAATCTCGCT---GATGAGTCTGAGCAAG------------TCTCCGAGCAAGCCGAAGAAGAATACATTCCACGTCAAATTGTTCTGGATAACGCTCCAGTTAACGTGAAC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   111118 235 +   115485 I

a score=46796.000000
s ce10.chrX              1614220 56 + 17718866 CACGGAGATTATGAAGATAGTGATTCGGAGCCAGAGTATGCTGAAGAGGA---------TCGAGA
s cb4.chrX                757436 56 + 21540570 CATGGGGATTATGAGGACAGTAGTTCGGAGCCAGAATATGCCGAGGAAGA---------CAAAGA
i cb4.chrX               C 0 I 1777
s caeRem4.Crem_Contig196  168919 56 +   199417 CATGGAGACTATGAAGATAGTGACTCCGAGCCGGAGTATGCTGAGGAGGA---------TCGTGA
i caeRem4.Crem_Contig196 C 0 I 28
s caeSp111.Scaffold514    136878 56 +   141934 CATGGGGATTACGAAGATAGTGATTCTGATCCAGAATATGCAATGGAAGA---------CATGga
i caeSp111.Scaffold514   C 0 I 13
s caePb3.Scfld02_133       47686 56 -   344637 CATGGAGACTACGAAGATAGTGATTCCGAGCCAGAATATGCTGAGGAGGA---------CCGTGa
i caePb3.Scfld02_133     C 0 I 13
s caeJap4.Scaffold16506   111353 65 +   115485 CACGGCAACTACGAAGATACCGATTCGGAACCTGAGTACGCTGAAGAGGATGACATAACTCAGGA
i caeJap4.Scaffold16506  I 235 C 0

a score=-18563.000000
s ce10.chrX              1614276 41 + 17718866 ---GCCTCTTGCAGT---------------------TCAAG----TCCAGTTAGAGCAT--------CAAGTT------------GA---------TG
s caeRem4.Crem_Contig196  169003 85 +   199417 ---GCCTTCATCCGTCAGGAAATTGTACAGGCCGCTGCAAG----CCCAACCGAACCATTGGCTGTTCATATTCACAGT------GAAGCTGCCCACG
i caeRem4.Crem_Contig196 I 28 C 0
s caeSp111.Scaffold514    136947 79 +   141934 ---tCAATTGTCGGT----------GAATCACAAACAACAGTTCTTCCGGCTGAGCCGATG------GATGTTAACACGcaaattgaagagaatttTG
i caeSp111.Scaffold514   I 13 C 0
s caePb3.Scfld02_133       47755 85 -   344637 ---gaatttgTCCGTCAAGAAGTTGGAGTCACCGCTGCAAG----CCCAGATCAACCATTGGAAGTTCATGTTCATCAG------GAACAGGACCACA
i caePb3.Scfld02_133     I 13 C 0
s caeJap4.Scaffold16506   111418 41 +   115485 GGAGATTTTAGCACACCACAAATTAGATCAGCAAGCAAATG---------------------------------------------------------
i caeJap4.Scaffold16506  C 0 I 248
e cb4.chrX                757492 1777 + 21540570 I

a score=43633.000000
s ce10.chrX              1614317 321 + 17718866 TCTCTCCACCAACCTCAAATGTTACTCAAGATAGTCCAAAAGAAATGAGCTACCAACATAGTGAGCCATCACCAGCACTTCCAAGCCCAGATGC------------------------------------------TTCGGTTCCCTCCGAGCACGAAAGATTCGCGAGATCACCACCGACACTGGTCTTTACT----GAACAATCTACAGAGGATGCACCAGAGAGCCCAAACGAAGTTGTGCATCACGTGCAGACTGAAGCTCAGCAAAGCCCGGTTATCGATGTTCATAGTACTCATGTTGTTGAGCACTTTGACACACACGACGAATCTCCACAAAGTCCTGTTCTATCAGTTCACGGAGGAG
s caeRem4.Crem_Contig196  169088 342 +   199417 TCTCACCACCAGTCTCTGATAATACTCAAGAAAGTCCAAAGGAGTTGAGCTACCAGCACGATGAGCCATCGCCAGTTCTTCCAAGCCCAGGGGATGCTCCAGAGGATGCACCAGAGGAAGCGCATAGCCCAATTCAATCCGTTCGCTCTGGTCAC------------AGAACTCCACCAACTCTGATCTTCACT----GATCAATCTACCGAAGATGCGCCAAAGAGCCCAGAGCACTTCGAGCATCGC---------GAGGCTCAACAAAGTCCAGTGGTTGATGTTCATAGCACCCATGTTGTTGAGCACTTTGAATCTCATGATGCAATTCCACAAAGCCCAGTATCTTCAGTTCATGGTGGTG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    137026 288 +   141934 TGCCATCAAGAGATTATGAGGAAACC------ACTCCAAAAGAGGTG--TTACATCCTGAAT-------CACCCGTTTTGCTAGTTCCAGCAGA------------------AGAACAAGAC------------GCATCAGTTCCTCCGG------------------GAAATATTACGACT----TCTCCAGTATTGGTACAGTATACTGAAGAATTACAACAAAGCCCGCGTCTTTTGGAGAGTC------------AGGCTCAACAGAATTTAATTGTAGACGTCCAAAGCGCTAATGTAGTTGAACACTTTGAGACTCATGAAAACTTCCCAGAAAGCCCAGTTCTTTCGATACATAGTGAGG
i caeSp111.Scaffold514   C 0 I 1106
s caePb3.Scfld02_133       47840 297 -   344637 TCTCTCCACCAGTTTCCGACTTGACTCAAGAGAGTCCAAAGGAGTTGGACTACAATCAAGAT------------GTGCTTCCAAGcccagaaat------------------tgaaaaagtccCAAGCCCAACTGCATCTGCTCGTTCTA------------------GAACTCCACCAACCCTCATCTTCACT----GAGCAATCCACAGAGGAAGCCCCACAGAGCCCAGTTGTCTCTG------------------AAGCTCAACAAAGTCCAGTGGTTGATGTTCACAGCACTCATGTGGTGGAGCACTTTGAAAGTCACGATGCAACTCCACAGAGCCCAGTTTTATCAGTTCACGGTATAG
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   111459 248 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I

a score=4374.000000
s ce10.chrX              1614638 662 + 17718866  
s caeRem4.Crem_Contig196  169430 479 +   199417  
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       48137 623 -   344637  
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   111459 248 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=8079.000000
s ce10.chrX              1615300 54 + 17718866 CATGTTTCTGAACACTTTGAGCATCACGAAGAAGCTCAACATAGCCCAGTAGCT
s caeRem4.Crem_Contig196  169909 45 +   199417 CAAGCTTCCGAGCAATCTGAGC---------AGCGTCAAGATAGCCCAGTGGCT
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       48760 45 -   344637 CACATCTCCGAACACTCTGAGC---------CAGCTCCAAAGAGCCCAACTCCA
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   111707 54 +   115485 CATACCTCTGAGAGTTTTGAGCACTACTCGCCAGCTCCGCAAAGCCCAGTGGTT
i caeJap4.Scaffold16506  I 248 I 291
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-19872.000000
s ce10.chrX              1615354 600 + 17718866  
s caeRem4.Crem_Contig196  169954 519 +   199417  
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       48805 669 -   344637  
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   111761 291 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-2909.000000
s ce10.chrX              1615954 66 + 17718866 AACTCAGCTGTAGTCGAGGCAGGTCAGGAACCAGCTACCCAAAGCCCAATCCCTCTTG--AGCAGGAA
s caeRem4.Crem_Contig196  170473 51 +   199417 ---CCAGCTCCACA------AAGTCCAG------TTCTCTCGGTTCACAGCTCTCATC--ATTCGGAA
i caeRem4.Crem_Contig196 C 0 I 29
s caePb3.Scfld02_133       49474 63 -   344637 ---CAAGCCCAACGTGAAGCTAGTCCAG--CCAACTCTCCACGCCCGAAAAGCCCAGCCGAGTCTGAA
i caePb3.Scfld02_133     C 0 I 6
s caeJap4.Scaffold16506   112052 63 +   115485 AGCCCAGCTGC---TGCCGTGAGTCAACATTCAGCTCCCCAGAGCCCAGTCGCTGCTG--AAAATGAT
i caeJap4.Scaffold16506  I 291 C 0
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-1817.000000
s ce10.chrX              1616020 36 + 17718866 ------GGAAGGTTTGAGAGAGCGGCATCGGTGAACAGCTAT
s caePb3.Scfld02_133       49543 25 -   344637 ------GGC---TTCGAGCGTGCTTCATCTGTT--------C
i caePb3.Scfld02_133     I 6 C 0
s caeJap4.Scaffold16506   112115 39 +   115485 TATTCAGCT---TCTCAGAGTCCAGTTGCCGCTGAGAGCTAT
i caeJap4.Scaffold16506  C 0 I 3
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I
e caeRem4.Crem_Contig196  170524 29 +   199417 I

a score=-2420.000000
s ce10.chrX              1616056  89 + 17718866 CAAGCTTCCGAG------------------------------AGTTTTG-AGAATCAGGAAGCTACAGTCGTCGAGCATCATGCTG---GAGCTTTGCAAAGCCCGGTGGCTTCTGAAAAAGA
s caeRem4.Crem_Contig196  170553  93 +   199417 CGAGGTTCCAAGAAGCCCAGT-----------GCTATCTGTTCATTCTG-AGCACCAAGAT---------------CATCATGAAC---CAGCTCCACAAAGTCCAGTGCTGTCAGTGCACAG
i caeRem4.Crem_Contig196 I 29 C 0
s caePb3.Scfld02_133       49568  63 -   344637 --------CAAG-----------------------------------TG-ACCATGAGCAA---------------CATCATGAGCAAGCTGCTCCACAAAGCCCAGTCGCCTCTGAGAAGG-
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   112157 113 +   115485 -CAAGCTCCGAAAAGCCCAGTTGTTGCTGAGAGTCACTCTCCCGCTCCGCAGAGCCCAGATATTGTTGTC------AGTCATTCTT---CAGCTCCTCAAAGCCCAGCCGCTGCTGAAAATGA
i caeJap4.Scaffold16506  I 3 I 1137
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-2167.000000
s ce10.chrX              1616145 63 + 17718866 AGTTTCTGAAGCTATTTCTCAGCCAGCCGCAGAGC------CAGCCGCCCCGAGTCCAATTAGTTCCGA
s caeRem4.Crem_Contig196  170646 48 +   199417 TTCACATG------------------CCTCTGAACATG---TAGCACCACAAAGCCCAGCTGGATCCGA
i caeRem4.Crem_Contig196 C 0 I 45
s caePb3.Scfld02_133       49631 54 -   344637 ---ACATGGACCTA--GAAAAAGCGTCTTCAGTGCATGCTTCAGCTCCACAGAGTCCAA----------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-264.000000
s ce10.chrX              1616208 45 + 17718866 GGTTGAAGCTCACTCC----GAGCACCATCACACACAAGAAGAAATTCC
s caePb3.Scfld02_133       49685 29 -   344637 -GTGGAAACT--CTCCAAGAGAGCACCAT---------GAA--------
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I
e caeRem4.Crem_Contig196  170694 45 +   199417 I

a score=4826.000000
s ce10.chrX              1616253 120 + 17718866 AATTGTCCAAACTTCTGAGCACATTGATTTAACAGATGTCCCAAGAAGCCCAGCTTTTTCAATGAATGACTCCCACCACGAAGATCAGCTGAGCCATGAAGCCGCCCCACACAGCCCAGT
s caeRem4.Crem_Contig196  170739 120 +   199417 AGCTGCTCACCCAACAGATCATATTGATCTCACTGATATCCCAAAGAGCCCAGTTCTTTCCATGAACGACTCATATGCTCCGGATCACTTGGAACTTGAAGCTATTCCGCATAGCCCAGC
i caeRem4.Crem_Contig196 I 45 C 0
s caePb3.Scfld02_133       49714  68 -   344637 ---------------------------------------------GAGCACGTTCACTTCCAAGAAGGA-------GCTCCCGAACAAATGGAACATGAAGCTACTCCAGGAAGTCCAGT
i caePb3.Scfld02_133     C 0 I 36
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-1613.000000
s ce10.chrX              1616373 21 + 17718866 TGC------------------------------ATTTACTGAA------------------CCTCGCGT
s caeRem4.Crem_Contig196  170859 69 +   199417 CGCTGCTCCAGAGCCAGAATCCCACAGTCCAGAACCTTCTGAGAAGGACGCTCAGTTTGCTCCCCGATC
i caeRem4.Crem_Contig196 C 0 C 0
e caePb3.Scfld02_133       49782 36 -   344637 I
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-820.000000
s ce10.chrX              1616394 1 + 17718866 -A
s caeRem4.Crem_Contig196  170928 1 +   199417 C-
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       49818 1 -   344637 C-
i caePb3.Scfld02_133     I 36 C 0
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e cb4.chrX                757492 1777 + 21540570 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=9831.000000
s ce10.chrX              1616395 23 + 17718866 CCATCAGTTCATACAAGTGACAC
s cb4.chrX                759269 23 + 21540570 CCATCTGTTCATACAAGTGACGC
i cb4.chrX               I 1777 C 0
s caeRem4.Crem_Contig196  170929 23 +   199417 CCATCCGTTCATACCAGTGACGC
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       49819 23 -   344637 CCATCAGTGCATACTAGTGATGC
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   112270 1137 +   115485 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=11093.000000
s ce10.chrX              1616418 39 + 17718866 AGAAGAAGAAAGCTTTGAAGTTCAACACCATGCAGGTCT
s cb4.chrX                759292 39 + 21540570 CGAGGATGAGCATGAAGAAATGAAGCATGGAtctaattt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  170952 39 +   199417 CGAGGAAGAGACGTTTGAAGTTCAACATCACGCAGCGCT
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       49842 39 -   344637 CGAGGAAGAAACCTTCGAAGTTCAACACCACCAAGTGCT
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   113407 39 +   115485 AGAAGAAGAAAGTTTTGTAGTGCAGCACCATTCTGCCCT
i caeJap4.Scaffold16506  I 1137 I 41
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=-3878.000000
s ce10.chrX              1616457 25 + 17718866 GACTCAAGAAT------ATGCAGCA---------------------CGGAAA
s cb4.chrX                759331 22 + 21540570 caatgaaaaat------acgCTCCA---------------------AAA---
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  170991 43 +   199417 CACTCACACTT------CTGCTCCATCCCCACCAGTCAGAGCTCCCCAG---
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       49881 28 -   344637 TACTCACTCCCAACCAGCTGCTCCA---------------------CGG---
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   113446 41 +   115485 I
e caeSp111.Scaffold514    137314 1106 +   141934 I

a score=8004.000000
s ce10.chrX              1616482 12 + 17718866 AGTCCAACAGAG
s cb4.chrX                759353 12 + 21540570 AGTCCAACCGAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  171034 12 +   199417 AGCCCAACTGAA
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    138420 12 +   141934 AGCCCTACCGAA
i caeSp111.Scaffold514   I 1106 C 0
s caePb3.Scfld02_133       49909 12 -   344637 AGCCCAACTGAA
i caePb3.Scfld02_133     C 0 C 0
e caeJap4.Scaffold16506   113446 41 +   115485 I

a score=44930.000000
s ce10.chrX              1616494 181 + 17718866 ATGGATCTG-----TACAACCCA--------------TCACG-------TGACAACCAAGAAAGCCCGG-TCATGTCTGAA------------A-----CC---GAGGCGATTCCTATTGTAGATCGTATTGATCTTGAAGCGTATCACAACTCTCCAACAAAGGAATCCACAAGCCCAGTCAC-AGTT--AACCCAGTTGAAGTGC------------GAGTTTCTGCAGATGAAGTTGC---------GG
s cb4.chrX                759365 202 + 21540570 ATGGATCTA-----TATTATCCA--------------TCGCG-------AGGAGATGTTGATAGTCCAG-TAATGTCCGATTC-----ATCTCCAAGATCA---GAAACAGCTCCGTTCACTGAAGGTAAAAATATCACTGCTTATCAAGATTCGGAAACTCGGGAATCAACTAGTCCAGTCCC-T-----AAAGCAACTGAAGACACGA---------ACATTTCCATTGAACAAGTCGCACAACACATCG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig196  171046 202 +   199417 ATGGATCTC-----TACAATCCA--------------TCGCG-------TGAAAACCAACCAAGCCCAG-TGATGTCTGAACCT---GATCTTC-----CA---GCTGGAATTCCAATTGCAGATCGTATCGATCTTGAAGCTTATCACAACTCTCCAACAAAAGAATCTACTAGTCCGGTGGT-TGTG--AACCCAGTTGATCATCCAATGGAGGTCCAAATCTCTGCTGAACAAGTTGC---------CG
i caeRem4.Crem_Contig196 C 0 C 0
s caeSp111.Scaffold514    138432 192 +   141934 ATGGATTTG-----TACAACCTA--------------TCACG-------TGACGATCAAGAAAGTCCGG-TGTTGTCGGAC---AACGATGACG-----CA---CCTGCCATTCGAATCACTGAGGGCAGAGATCTGGTAGTAGACAACGATTATCCAACCGAAAAA-CTACTAGTCTAACTACTAGTATCAATACTATTGAAGAAC------------ATACTTCCAGTGGAGAAGTTAC---------TA
i caeSp111.Scaffold514   C 0 I 73
s caePb3.Scfld02_133       49921 196 -   344637 ATGGATTTG-----TACAACCCA--------------TCCAG-------TGGACCACAAGAGTCTCCAG-TGATGTCTGACTCTGAGGATAATG-----TAACTTCTGCAATCCCAATTGCTGATCGTATTGAGATGGAAGCCTATCACGACTCCCCAACTAAGGAGTCTACTAGCCCAGTTGC-AGTA--AACCCAATTGAAGTCC------------AGGTTAACGCTGAGCAAGTGGC---------TC
i caePb3.Scfld02_133     C 0 C 0
s caeJap4.Scaffold16506   113487 216 +   115485 ATGTATCTGCCGCCCACAATCCAACCGTAAATTATCCTCATGAAGAGTTTGAAGAACGACAAAGTCCGATTGATGCCCCAACGT----TTCAAG-----AA---CAAGGAGTGGCAATAGCTGACCGTATTGACTTAGAAGCTTATCATAATTCTCCAACTAAAGAAACTACTAGTCCGGTTAT-TGTC--AATCCAATTCAAGTTC------------ATGTTGTGGCAGAGCAAGTTGC---------TG
i caeJap4.Scaffold16506  I 41 C 0

a score=-7875.000000
s ce10.chrX              1616675  62 + 17718866 AGCATCTTGCAT------------------------------CTCCTCATCAGAAT------TTTGAAGAT------------------------GAGCCA-TCGCATCTG-GTTGATGAATCC-----
s cb4.chrX                759567  90 + 21540570 ACCAACATCCGA------------------------------GTCCAAAAGAAGATATGGTCATCGTTGATACTATTTCGAACACAGATAATGACAGTTCT-TTGCCGTCACAGTCAATAA--------
i cb4.chrX               C 0 I 6
s caeRem4.Crem_Contig196  171248  92 +   199417 AACAACTTTCCA------------------------------CTCCGGAACAAAAGCAAAATTTCGAAGATATCATCAATAAATCTGCCGATGAGGAAGCT-TCACACTTG-ATTCAAGAAGCG-----
i caeRem4.Crem_Contig196 C 0 I 6
s caePb3.Scfld02_133       50117  86 -   344637 AACAACTCTCCA------------------------------CTCCAGAACAAAAG------TTCGAGGATATCATCAACCAATCTGCCGATGAGGAGGCT-TCCCACTTG-ATTCAGGAAGCG-----
i caePb3.Scfld02_133     C 0 I 6
s caeJap4.Scaffold16506   113703 119 +   115485 AGCAACTTTCTAGTTTGTCTAATAACGACATTATCACTGAGCCTGCTAATCAAGAT----TCTTCACTGACTTCA-----GAAGCAATAAATGAGATTCCAGTTATCATTG-ATATGGTGAACAACTAC
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    138624  73 +   141934 I

a score=-43508.000000
s ce10.chrX              1616737 194 + 17718866 ---GAAGTGCCCAACAACTTTGAAACAGTCCCAGAGCAAGAGGCATATGCTCC------AAGCCAAG-------------------------------------------------------ACGCTATGATGACCTCAATCTACCAACCGGGCT------------------------------------------------------------CAGATACGGAGACCAGGG------------AGTGG-----------------------GATGAGGGAGAGCATCACGTGAAGGA---ATCGACAACTCACTCCGA--GCACAC-CGATGGTAATACTCACAC-GTCGGTCCAA--GA
s cb4.chrX                759663 238 + 21540570 ---AAA----CAGATTCTATTGGCAACGTCGAAA---AAGAGGAGGATGAACACGTTGCGCTTCAAA----ACCTAAGCTCAAATAATCCGAATACGGATTTA------------------------ATGACAACTTCTGTTTATCAATCGGGATCTTatcaagaaa------------------------atgaaatgtttgatgA--------CGATCATCTGGTCCAACATACTA----ATCAATcg-----------------------gatgaaaaaaatgatcgTTTCTTGGA---GTC---------TTCGGATGCTTTGCATGACAAAACTG-------------TTCAG--GA
i cb4.chrX               I 6 I 19
s caeRem4.Crem_Contig196  171346 308 +   199417 ---GAAGCTCCAGCTATCATCGATATGGTGAATACTTatgaggagaaggagaa------gttCCCAGAGGCATATGAGCTCAAGT-ATAAAAATGAGGATGAAGGACATTCTCCAGTGTATAACGCCATGACTACTTCTATCTACCAACCAAGTTCGGATCAAGAAGATCACGATTCAAATTATGAAGATCATAAAGTAATTGAAGAGCACAAACCAACTATTGAAGTCAAGG------------AATGG-----------------------GATGAGGGAGATCATCATGTCAAGGA---ATCAACTACTGTTTCTGA--CTTTAC-TGACGGCACCACTCATAT-GTCATTCCAA--GA
i caeRem4.Crem_Contig196 I 6 C 0
s caeSp111.Scaffold514    138697 222 +   141934 ---aaaaatagaaacaccATCGGAATTTGCAACAACT--------------AA------AGTTCCAG-------------------------------------------------------ACGCGATGTTGACCTCTATGTATCAAGAAAGCACCGCTTCC---------------------------------GAATTGGA-----------TAACTATGAAGAGCAGGA------------AAAAGTTGACCAGTCAACAttcataattgaaaaaggtcatgaaaaaatcgaacaaCCATCTCCAACCCATTCcaa--gttttt-gga---aagtgATCATGCTGAAATTTCCGGTGA
i caeSp111.Scaffold514   I 73 C 0
s caePb3.Scfld02_133       50209 221 -   344637 ---GAAGCTCCAGCTATCATCGATATGGTGAACACCTATGAGGAGAAGGAGAG------ATTCCCAG-------------------------------------------------------ATGCCATGATGACTTCTATGTACCAACCAGGCTCCGATCACAGTG------------------------ATCATGAATCTGAGC---------CAACCACTCAGGTCAAGG------------AATGG-----------------------GACGAGGGCTCCCAACACATCAAGGA---GTCCACTatcaattctga--attttc-cgatGGAAACACTCATAC-GACGTATCAG--GA
i caePb3.Scfld02_133     I 6 C 0
s caeJap4.Scaffold16506   113822 245 +   115485 GAAGAACCTTCTCACTCCCCTGAAGCTTATGAGCTCAATTACAAGCAAGAAAG------TGCCCCAA----------------------CTAATGTTG------------------------ACCCAATGACAACATCGTTCTATCAACCATCATCAGAGC------------------------------ATGGAGGATCAGATA---------CGTTTATTGAAA-CAGGACCTGAAAACACCACTGGTTATAATCTCTAC----------GATGATGGCAGTGAGCACAATGAAGA---ATCGTTAACTCATTCCGT--ATATAT-CGAAAAAGGCAATTCTAACAACGA---------
i caeJap4.Scaffold16506  C 0 C 0

a score=722.000000
s ce10.chrX              1616931 26 + 17718866 AACCATCACTACTATCACTGACAATG-----------------
s caeRem4.Crem_Contig196  171654 26 +   199417 GAAAGTGACAATTGTCTCTGATAATG-----------------
i caeRem4.Crem_Contig196 C 0 I 23
s caeSp111.Scaffold514    138919 26 +   141934 AACAGTCACCAATATAATTTCTGATG-----------------
i caeSp111.Scaffold514   C 0 I 7
s caePb3.Scfld02_133       50430 26 -   344637 GACTGTCACTATTGTGACAGATAATG-----------------
i caePb3.Scfld02_133     C 0 I 22
s caeJap4.Scaffold16506   114067 43 +   115485 TTCAGCTTCTCCAGTCGCTGATAATTTGATTTATTCAAACGGT
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                759901 19 + 21540570 I

a score=57634.000000
s ce10.chrX              1616957 219 + 17718866 GCCATGAC----------------GCTGACAATATCTCCACTGACTCATTGGTCATTCATGA--A-----------CCCGCCG-----------CT---GACAATCAAATGACTCAATCCATCTATCAACCAC------ATAGTGACAA---TGATGATGATGATGACAAGGTTACGGAGAAGGAGTGGGATGAGGGCAACAAGCATGTTCACGAAATCACCGAA------GAGCACACTGATGAGTCGGGAAAACACTTTACGGAGACTGTAAGTT
s cb4.chrX                759920 202 + 21540570 TCCATGAT---------TCTGGATCAGGACAACATTTCCACAGATTCATTAAGCATTCATGATAA-----------GCAACCA-------------------AACCCAATGATGCAATCTATTTATCAACCGC------AGAGTGAGAA---TGAAGACG---------------------ATGATGGAGATCATCAAACCGATCACGTGCAAACAACCGTCACA------GAGAAAACCGATGAATCTGGAAGACACTATAAAGAAACTGtatgtg
i cb4.chrX               I 19 C 0
s caeRem4.Crem_Contig196  171703 247 +   199417 TCCAAGATGGCTCCTAATTCAGAACATGATAACATCTCGACTGATTCTCTTATCATCCACGATGATGCCCATCAACATAACCATCCATCTGATTTT---GATAACCAGATGACTCAATCCATCTACCAGCCAC------ATGATGAGGAAACCGAGGAGA---------------------AGGAATGGGATGATGGAAACAAGCATGTTCATGAAACAGTTACAAACTCGGAGTTCACTGATGAGTCAGGAAAGCATTATAGCGAAACGgtgagtt
i caeRem4.Crem_Contig196 I 23 I 582
s caeSp111.Scaffold514    138952 184 +   141934 TCCTCGTT-----------------CGGAAAATAGTTCTCAAAACTCCCTCGTCA---------A-----------TCACCCG-------GAAGCT------GATATTATGAGCCAATCAATTTACCAACCTC------GCGATGAAAT---TTTTGACG---------------------------GGAACGAGAGAAACaatgattttcttgaaaccaTCGCA------AAGCCAATTGCTGAATCTGGAGAACAGCCGAAAAAATCTGTAAAT-
i caeSp111.Scaffold514   I 7 I 5
s caePb3.Scfld02_133       50478 212 -   344637 ACCAAAAT-----------------CTGATAACATTTCTACGGATTCTTTGATTATTCATGATGA-----------TCAACCA-------GATGTTCACGGGGACCAGATGACTCAATCCATCTACCAACCCCATTCGGATGATGAGAC---TCACGAGA---------------------AGGAATGGGATGAGGGAAACAAACACTTCCATGAGACAATCACT------GAACATACCGATGATTCTGGAAAGCATTTTACGGAAACTGTAAGTG
i caePb3.Scfld02_133     I 22 I 9
s caeJap4.Scaffold16506   114110 202 +   115485 GCCAGGGA------------------TGCCAACATTTCCACCGATTCGCTTGTAATTCATGATGA-----------TCACGAC-------AAATCT---GATTATCAGATGACTCAATCAATTTACCAACCAA------GTGACGAGAC---CAGCGAAC---------------------AAGAATGGGACGATGGAAACAAACATGTTCACGAAGTCATCAGG------GAACATACTGATGAATTTGGAAATAGTCGTACAGAGACGGTAAAGA
i caeJap4.Scaffold16506  C 0 C 0

a score=-911.000000
s ce10.chrX              1617176 12 + 17718866 ATCTTAGTTAGT
s cb4.chrX                760122  4 + 21540570 --------aaat
i cb4.chrX               C 0 I 19
s caePb3.Scfld02_133       50699  4 -   344637 --------AAAT
i caePb3.Scfld02_133     I 9 I 8
s caeJap4.Scaffold16506   114312 10 +   115485 --AATAGGCAAT
i caeJap4.Scaffold16506  C 0 C 0
e caeSp111.Scaffold514    139136  5 +   141934 I
e caeRem4.Crem_Contig196  171950 582 +   199417 I

a score=40019.000000
s ce10.chrX              1617188 153 + 17718866 TTTATCAAATTACCCGTTCAATTGATT---TTT------TCTAGGTCACCACCACTACCACTACGGTTATCAAATCAGGAGAT---GATATGAAGAACAACAATGACGAGGAAGATG------GAAGTGATGAGG------------AGCGGGATAAAATAATTGAAGAAGAGGGAGAGTAAG
s cb4.chrX                760145 135 + 21540570 -----------------ttcaACAAGTAATATT--------CAGGTCACTTCCACTACCAACACTGTGATTAAATCGGGTGAC---GACCTGGAAAACAACAATGACGAGGAAGACC------ATGAAAGTGGGC------------ATAAAGAGCAAATTAtcgaggaggaagaagagta--
i cb4.chrX               I 19 C 0
s caeRem4.Crem_Contig196  172532 155 +   199417 -----------------TTAATCAAATCACGTTTG--TTTCCAGGTCACT---ACCACCACCACTGTTATCAAATCAGGTGACGATGACTTGAAGAACAACAATGATGAGGACGATC------AAGATGGTGGAAGTGATAATGATGACAAAGATAAAATTATCGAGGAGGAGGGAGAGTAAG
i caeRem4.Crem_Contig196 I 582 I 36
s caeSp111.Scaffold514    139141 150 +   141934 aaaatttgattgtaattttatttgaat---gtt------TATAGGT---T---ACAACCATCGTGGATACCAATTTAGATGACGATTCCATTAATAACAacgatgatgaagatgatg------atgttgGAAGAA------------ACGAGGAAGCAATTATTGAGCAGAAAGAAAAGTATg
i caeSp111.Scaffold514   I 5 I 90
s caePb3.Scfld02_133       50711 162 -   344637 GATATCAAACGGGCACTTTAATCgaatcaattt------tccaggtcact---ACCACTACCACGGTTATCAAATCAGGTGATGATGATTTGAAGAACAACAATGATGAGGAGGACGCGGGAAGTGATGATGAGA------------AGGATAAGATCATTgaagaggaggatgaagaGTGAG
i caePb3.Scfld02_133     I 8 I 1206
s caeJap4.Scaffold16506   114322 156 +   115485 ---------------TATAAGCAGTATCATGTTAGACATTTTAGATCACTTCCACAACCACTACGGTGATTAAATCAGGAGTCGATAAAAGAAACAACAACGCTGATGCGGAAAGAG------AACACAGTGAGA------GGCATGAAGAAAGAACGATTCTTGAAGAAAATGACGAGtaag
i caeJap4.Scaffold16506  C 0 I 331

a score=0.000000
s ce10.chrX              1617341 5 + 17718866 TTGTT
e caePb3.Scfld02_133       50873 1206 -   344637 I
e caeJap4.Scaffold16506   114478 331 +   115485 I
e cb4.chrX                760280 0 + 21540570 C
e caeSp111.Scaffold514    139291 90 +   141934 I
e caeRem4.Crem_Contig196  172687 36 +   199417 I

a score=836.000000
s ce10.chrX              1617346 41 + 17718866 AGAACTATTTTGATTTACGTGGGCTTACAAGTCAATTAAGA
s cb4.chrX                760280 34 + 21540570 AGAAGAATTTAGAT-------GACTTAGAAAATGATTAAAA
i cb4.chrX               C 0 I 300
e caePb3.Scfld02_133       50873 1206 -   344637 I
e caeJap4.Scaffold16506   114478 331 +   115485 I
e caeSp111.Scaffold514    139291 90 +   141934 I
e caeRem4.Crem_Contig196  172687 36 +   199417 I

a score=0.000000
s ce10.chrX              1617387 1036 + 17718866  
e caePb3.Scfld02_133       50873 1206 -   344637 I
e caeJap4.Scaffold16506   114478  331 +   115485 I
e cb4.chrX                760314  300 + 21540570 I
e caeSp111.Scaffold514    139291   90 +   141934 I
e caeRem4.Crem_Contig196  172687   36 +   199417 I

a score=106.000000
s ce10.chrX              1618423 6 + 17718866 TAAGCC
s caeSp111.Scaffold514    139381 6 +   141934 TACGTT
i caeSp111.Scaffold514   I 90 C 0
e caePb3.Scfld02_133       50873 1206 -   344637 I
e caeJap4.Scaffold16506   114478 331 +   115485 I
e cb4.chrX                760314 300 + 21540570 I
e caeRem4.Crem_Contig196  172687 36 +   199417 I

a score=141.000000
s ce10.chrX              1618429 4 + 17718866 AAAA
s caeSp111.Scaffold514    139387 4 +   141934 AATA
i caeSp111.Scaffold514   C 0 C 0
s caeJap4.Scaffold16506   114809 4 +   115485 AAGC
i caeJap4.Scaffold16506  I 331 C 0
e caePb3.Scfld02_133       50873 1206 -   344637 I
e cb4.chrX                760314 300 + 21540570 I
e caeRem4.Crem_Contig196  172687 36 +   199417 I

a score=-96.000000
s ce10.chrX              1618433 1 + 17718866 T
s caeSp111.Scaffold514    139391 1 +   141934 A
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       52079 1 -   344637 t
i caePb3.Scfld02_133     I 1206 C 0
s caeJap4.Scaffold16506   114813 1 +   115485 T
i caeJap4.Scaffold16506  C 0 C 0
e cb4.chrX                760314 300 + 21540570 I
e caeRem4.Crem_Contig196  172687 36 +   199417 I

a score=98055.000000
s ce10.chrX              1618434 173 + 17718866 TTTCAGACACGGCTCGAACGGCAACCTGGTCCGTGAAACCATCACCACCACAACCCACACCGTAACCTCCGGAGGTCTTCCAGAGGGCGGAATCCTTGTGGACGATGGGGATGAGACGAACATCTCCTCCCTCTAATTTTGTTTCAT-----------ATGTATT-GAT----TTTTTATTTCATGTTT
s cb4.chrX                760614 182 + 21540570 TTTCAGGCACGGCGCAAACGGGAATCTTGTTAAGGAGACCATCACTACAACAACTACTACAATCACCTCCGGAGGATTTCCAGAAGGTGGAATTCTTGTGGACGATGGAGATGAGAGCAACATTTCATCGATctaaat--atttctttttcccAACCAATGAGTTGGAT-----TCAGCTTCCATgctt
i cb4.chrX               I 300 N 0
s caeRem4.Crem_Contig196  172723 170 +   199417 TTTCAGACTTGGCTCAAATGGAAATCATGTCCGTGAAACCATCACTACCACTACTCGTACAGTAACTTCTGGTGGGATCCCAGAAGGCGGAATTCTTGTGGATGATGGAGACGAGACAAACATTTCCTCCCTCTAAAC--GTTTTGT-----------ATGGATT-GAT-----TCTCATTTGATCTCT
i caeRem4.Crem_Contig196 I 36 I 15
s caeSp111.Scaffold514    139392 151 +   141934 TTTTAGAAGCGGCTCCAACGGAAATTTGATCAAAGAAAGTGCCATCACAACAATTCATGATGCAGATACCGGAAGTCTTCCGGAAGGTGGAATCCTTGTCGATGACGGAGACGAGACTAACATTTCATCTCTATAAAC--------------------A------------------GCTTCTTTGCGT
i caeSp111.Scaffold514   C 0 I 11
s caePb3.Scfld02_133       52080 160 -   344637 ttccagacacgGCTCCAACGGCAATTTGGTCCGCGAAACCATCACCATCACAACACATACTGTCACCTCTGGAGGGCTCCCAGAAGGCGGAATTCTTGTGGATGATGGAGACGAGAAGAACATTTCTTCCCTATAAAT--------------------ATGAATT-GAT--------gcttttgtttct
i caePb3.Scfld02_133     C 0 I 8
s caeJap4.Scaffold16506   114814 169 +   115485 TTTCAGACATGGGTCAAATGGAAATTTATTCCGAGAGACAATCGTCACGACAACGCATACTACA------GGAGGGCTTCCAGAAGGAGGAATTCTTGTAGACGATGGAGATGAGACGAACATTTCTTCTCTCTAATC--GCTTTCT-----------ATGAATT-GATTGATTACAGATCTCATGCTT
i caeJap4.Scaffold16506  C 0 C 0

a score=-6031.000000
s ce10.chrX              1618607 53 + 17718866 -------CCT-TTTGTCTCTTTTCCCCAGATCTCTAGTTATAAGCTTTTTTATTTTTTGTA----
s caeRem4.Crem_Contig196  172908 37 +   199417 -------TCTATTCGCTCTGTTCtcattattctc-------------ttttcttgt----a----
i caeRem4.Crem_Contig196 I 15 C 0
s caeSp111.Scaffold514    139554 48 +   141934 -------TCT-TTCATGATCTCCTCGCACACTTCAATTAATCATGCGTTTTCTATT---------
i caeSp111.Scaffold514   I 11 C 0
s caePb3.Scfld02_133       52248 32 -   344637 -------tct-CTCACTCTTTcct---aaatttc-------------ttttttttt---------
i caePb3.Scfld02_133     I 8 C 0
s caeJap4.Scaffold16506   114983 46 +   115485 cgctcgtttt-ttttcctttttctaaggaacctt-------------tttggtttt-----tcta
i caeJap4.Scaffold16506  C 0 N 0

a score=-2896.000000
s ce10.chrX              1618660 32 + 17718866 GCAATTTTTTTGTCTTCTTCTAA---TCATTTCAA-----
s caeRem4.Crem_Contig196  172945 27 +   199417 GAAATTTTTCTATACTAA--------CCATTTCAA-----
i caeRem4.Crem_Contig196 C 0 I 27
s caeSp111.Scaffold514    139602 38 +   141934 --AATATTTGTTTACCGTGGgaacttttgtttcttggCAT
i caeSp111.Scaffold514   C 0 C 0
s caePb3.Scfld02_133       52280 27 -   344637 --accatttcTATGC-----------TTTTTTCCTTGTAg
i caePb3.Scfld02_133     C 0 C 0

a score=-160.000000
s ce10.chrX              1618692 14 + 17718866 ATTTCTC------TATT-----TTT
s caeSp111.Scaffold514    139640 25 +   141934 AATTGTcgaaattttccaaatattt
i caeSp111.Scaffold514   C 0 N 0
s caePb3.Scfld02_133       52307 14 -   344637 atttctc------ttcc-----ttt
i caePb3.Scfld02_133     C 0 I 78
e caeRem4.Crem_Contig196  172972 27 +   199417 I

a score=0.000000
s ce10.chrX              1618706 19 + 17718866 ACTCGTTCCTTCGTCGGGG
e caePb3.Scfld02_133       52321 78 -   344637 I
e caeRem4.Crem_Contig196  172972 27 +   199417 I

a score=-682.000000
s ce10.chrX              1618725 74 + 17718866 AGTGCTGAAATTTCTAAATTCTTGCAGAATTAAAGCATTTCCCTCTCGTTGACAAATTATTAGAATTAATTGCA
s caeRem4.Crem_Contig196  172999 44 +   199417 agcactgaaaaac---actttttctgaaactaa--taTTTTCTTC-------------------------CGAG
i caeRem4.Crem_Contig196 I 27 C 0
e caePb3.Scfld02_133       52321 78 -   344637 I

a score=35175.000000
s ce10.chrX              1618799 357 + 17718866 CCTAGTTTTCACACTCCTCCC-TTACGTCTTCTGAGGTTTCAAATCTGGAGTTGCGCATCAGCAAAAT----CTTGTGATTT----TCTTGTACCCCTGTCTTCCTTTT-------CCGCTGG--TTTTGCTTCCTATGCTTAGCTTTAACCACCTTCTTTTTCAATTTATTTGCTCCGAGAATTTTAATTTTTGGTTATTACTCTTATTATTTAGTATTTAAAGTTTTTGACAGCAAAAAT--TA------------ACCGTTTCTATTGTAAC--------------TTCT---------------------TCCTTGTCTGTCTCTTGA-----TGCTTTCTGTGGTGTGGTGGTCTGAATATAGTCAATTGTTTTTTTTCTTAAATTTCTGGTAAATAAAGTAGTCGTGTCAAAACAATTTTATT
s caeRem4.Crem_Contig196  173043 350 +   199417 CTTAGTTTTCATACTCCCATA---ACGTTTTCTGAGGTCT----TCTGGAGTTGCGCATCAGCAAAATGACAGTTGTGATTTGACCTATCCCATCCCATCCTTCCCTTTTTCCATACCGCTGG--TTTTGCTTCCTATGCTTGGCTTTAACCATTTTTCTCCGCTCTA---------------------------------------ATTTCTAAATGTTTGTGttttcccccaaaaaaagttctataATTTCATTCTATCTTTTCTATTGTAAACTAAAAAATCTATGtctc---------------------tctgtgtctctcattTGAAACAATGCTTTTTGTGGTGTGGTGGTCTGAAAATAgtc-----tc----ttttttaatttctggTAAATAAAGTAGTCGTGTCAAATTA-TTGTact
i caeRem4.Crem_Contig196 C 0 C 0
s caePb3.Scfld02_133       52399 367 -   344637 TCTagttttcatactttttcaaatacgTTTTCTGAGGTCT----TCTGGAGTTGCGCATCAGCAAAATGACAGTTGTGATTTGACCCATCCCatcccctttttcttcttctttgttccgctggttttttgcttcctatgcttggctttaaccacttttcttcCCGATAT-TTAGC-------------------------------TTTTCCTaagtgttttta---------aaaaaagatactA------------ATCTCTTCtattgtaacaaaaaaaacctggatTTCTATCTAAATTTATATGTTTGttctatatttttctctctgaaaacagCTTTTTGTGGTGTGGTGGTCTGAATAtagtc-----tctctttttttcaatctctgGTAAATAAAGTAGTCgtgtcaaaaaacttgaatt
i caePb3.Scfld02_133     I 78 N 0

a score=253.000000
s ce10.chrX              1619156 13 + 17718866 GAAATT---CAAATGC
s caeRem4.Crem_Contig196  173393 16 +   199417 aaatttttgcaaatac
i caeRem4.Crem_Contig196 C 0 N 0

a score=5051.000000
s ce10.chrX 1629837 120 + 17718866 CCATCTAAAATATCCGTAAAAAATCTGAAAAAAATTTTAGCTCGCGGGGGGACTCGAACCC-CCATTCCCGGTTCCGGAGTCCGGTGCCTTATCCATTAGGCCACGCGGGCGTATTTACCT
s cb4.chrX  1401832 120 + 21540570 CCCCTTATATTGTTCACaaacaaaatcaaaatgatttcGAC-CACGGCAGGACTCGAACCTGCAATCCCCAGATCCGAAGTCTGGTGCCTTATCCATTAGGCCACGCGGCCACATTCCCTT
i cb4.chrX  N 0 N 0

a score=41455.000000
s ce10.chrX  1806812 974 + 17718866  
s cb4.chrX  19973048 973 - 21540570  
i cb4.chrX  N 0 N 0

a score=1311.000000
s ce10.chrX             2013026 4 + 17718866 GCAA
s caeRem4.Crem_Contig15 1318046 4 +  1794024 GCGT
i caeRem4.Crem_Contig15 N 0 C 0
s caeSp111.Scaffold582     6595 4 -   484378 GCGT
i caeSp111.Scaffold582  N 0 C 0
s caePb3.Scfld02_0       495376 4 +  4147112 GCGT
i caePb3.Scfld02_0      N 0 C 0

a score=9705.000000
s ce10.chrX              2013030 13 + 17718866 GCGATTTGATTAA
s cb4.chrX              16868832 13 - 21540570 GCGACTTGATTAA
i cb4.chrX              N 0 C 0
s caeRem4.Crem_Contig15  1318050 13 +  1794024 GCGACTTGATTAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      6599 13 -   484378 GAGACTTGATTAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        495380 13 +  4147112 GAGAGTTGATTAA
i caePb3.Scfld02_0      C 0 C 0

a score=95662.000000
s ce10.chrX              2013043 311 + 17718866 ACT-----CATGGGGCGAC----ATGCTTTATA------------------ATATTTAAA--------------ATAGAGGTGCAGAGAATGTAGAGAGTCGGGGGCCGTAA----GTCTCCACGGCAACCA--CACTCCACCTGCCTATTACGCAGAG--------------------AGCGCGAGAA-----GCCGGCAGTAC--GTTGCTGCCCACGGC--------GCA-TTTGTGGT----------TAACTAAATC-AGATTTCAATATTCGTAGTTAGGTATATGTTTTCGAGATTTCGAAAAATTGAGTCCTGATTAATGCCTCCACCAATCGGTCGAAATATCAGTGTAAAGCATGGACGTTCGAAATCAACTTCTGCAGCAACAGGTGAGTTTTT
s cb4.chrX              16868845 348 - 21540570 ACTCGCCACCACCGCCGGC----ACGCTTCATG------------------AGGGTCGAGACGTGGTG-TGTGGGAATAGGCGGAGAAA---AGAAACGAAGAGTCGCAGAG----GTTGCCTGAGCAACCG--CCATCCACCTGCTCATTACACAGAGAAAagga-gcgaggaggaggaggaggagaa-----gccGGCACTTCTGTTTGTTGCACTCGACGGCTTATATTATTTTGTTGTATTCTGTGTCTAACTCAATTTCGACTTT-----TGAT-----GTTTCGTGGTCGTCGGTGTTGA----TTT-----CTGATTCATGCCATTGCCAAACGGTAGAAATGTCAGTGCTAAGCCAAGGAGGTCAAAATCCACATCTGCTGCAACAGGTTGGTGTTT
i cb4.chrX              C 0 I 301
s caeRem4.Crem_Contig15  1318063 307 +  1794024 ACT-----CTACGGGCGGC----ACGCTTTATA------------------AGAAATGAGG---------GTGGCGAGAGGCGGAG------TGAAATGCTCGGCTGC--GA----GTTGCCTCGGCAACCA--CTCTCCACCTGCTCATTAcatggagaaa--------gagagaacgaGGGTGGGAA-----GTCCGCATTAC--GTTGTTGCACTCCAC--------TCATTTTGTCG-----------TAACTCAATTGGAATTTC-----TGTTAGTTAGGTTTATGTTTGGACATATTTG----ATT-----CTAATTGATGCCACTACAAAACGGTAGAAATGCCAGTGCAAAGCCGGGACGATCGAAATCAACTTCTGCAGCAACAGGTTTGCTCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      6612 302 -   484378 ACT-----CGCCGGGCGGC----ACGCTTCTTA------------------AGAAACGCGCC--------GGCGACAGAGGCGGAG------TAAAGAGGCTGGACGAGGGG----GTTGCCAAAGCAACCA--CTCTCCACCTGCTCATTACACAGAG-----------------ACGC-GAGAGGAA-----GCCAGCATTAC--GTTGTTGCACTCGAC--------GAA-TTCGTCG-----------TAACTCAATT-CGATTTC-----TGCTAGATAGGTTTATGTTCCGAGATTTTCGAACTATT-----CTGATTGATGCCGCTGCCAAACGGTAGAAATGTCAGTGCAAAGCCGGGACGTTCGAAATCAACATCGGCTGCTACAGGTACGCGTTT
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0        495393 298 +  4147112 ACT-----GGCTAGGCGGC----ACGCTTTTTA------------------AGGACTGAG----------GGCGATAGAGGCG-------------GAGACTGGAGGAGAGGCAGAGTTGCCTCGGCAACCCCTCTCTCCACCTGCTCATTATATGGAG-----------------ACGCGGAGGGGAA-----GCCGGCATTAC--GTTGTTGCACTCGAC--------GCATTTCTCCA-----------Taactcaatt-caatttt-----tggtagTTAGGTTTATGTTCCGAGATTTTCGAACTATT-----TTGATTGATGCCGCTTCCTAATGGTAGGAACGTGAGTGCGAAACCGGGTAGATCCAAATCAACTTCTGCTGCTACAGGtacg---tt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold14268    58193 337 -    96895 ACT-----CATGCGACTGCGACAGCGCTGCATAATTAAAGTATAAGCGGCGAGAACTAATAGGAAATGAGGGTGGGAGAGGCGGAACC----CGGAGCAGGCGAATGC---A----GTTGCCTGGGCAACTA--CACTCCACCTGCTCATTACATTGAGAGACGAAGGCGGCGGCGACGGCGGCGGAAAGTCCGGCCGACATTAC--GTTGTTGCACTCGGC--------GCA-TTCTC-------------TAACCTAATT-----TTA-----TTGAAGTTACTCTAGTGTGCTCCAAGTCAAG---CATT----------TCATGCCAGTTCAAAACGGGAAGACCGTGAGCGCAAAGCCGGCTCGCTCGAAATCGACATCTTCTG---CAGGTACGTTTTT
i caeJap4.Scaffold14268 N 0 I 146

a score=1335.000000
s ce10.chrX              2013354 11 + 17718866 CTTCCTTGTTT
s caeRem4.Crem_Contig15  1318370 11 +  1794024 TATATGTGTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      6915 11 -   484378 TCTCATTATTT
i caeSp111.Scaffold582  I 1 I 233
s caePb3.Scfld02_0        495692 11 +  4147112 tttgtttgttt
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold14268    58530 146 -    96895 I
e cb4.chrX              16869193 301 - 21540570 I

a score=-185.000000
s ce10.chrX              2013365 4 + 17718866 TCTG
s caeRem4.Crem_Contig15  1318381 4 +  1794024 TTTG
i caeRem4.Crem_Contig15 C 0 I 242
s caePb3.Scfld02_0        495703 3 +  4147112 ttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    58530 146 -    96895 I
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I

a score=-730.000000
s ce10.chrX              2013369 171 + 17718866 AAGTAATCAATTATCTTAGTAAGGTAGTAGCGTTTTC--GAATTATACTCACATTGTCAAAACCCCAATTTCTCTTTTTTTTAGTAGCTGTCGACATTTAAAACAGAGTTTTAAACATATTTTGCTTATTTGAGCAGTTTATAGTTTGCGGTttaaaggaggactaatagttt
s caePb3.Scfld02_0        495706 104 +  4147112 --------------------------------ttttccaaaattttactTGTAGT-----------------------TATTAGTACATTTTGACTTCGAGATTAGA----CAAAAATGTCATACAAATTTAATAACTG----------GGTTACAAATGGAACCAATAgtct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    58530 146 -    96895 I
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I
e caeRem4.Crem_Contig15  1318385 242 +  1794024 I

a score=0.000000
s ce10.chrX              2013540 139 + 17718866 ggacgattctaaacgtgtagacccagaaaagactcaaatgagcaaattttgtaatgaaacttctcaaaaattgtttaaagaatttttatcgcgtgtcaaatcttcggaaaaattacacagattttagttaaaatctcga
e caePb3.Scfld02_0        495810   0 +  4147112 C
e caeJap4.Scaffold14268    58530 146 -    96895 I
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I
e caeRem4.Crem_Contig15  1318385 242 +  1794024 I

a score=-2864.000000
s ce10.chrX              2013679 335 + 17718866 agtttggctacttttccgggccacatctgtccttttgatatttttgaagtggtttatctcatttaattttgtcaattaagatacacttgtagcgattggaaaccaaaaattattgaatttggttacctatcgactttaatcggtgaaattTGACATTTTTGTAACTAACCATTTTTTTAATCGCAAATGGTGTTAGTCGATCTCACCTTATTATTTATTTTTAAGCTTCCAAAAGTTTATCGTTAATTTGAGAAAAGTTTTAGTCGAAAGTCGTTCGAAGGGTTACTCCTCCTTTAAAAGAAACATGAGTATGCTTCTAGATTATTCTTGCTCAT
s caePb3.Scfld02_0        495810 170 +  4147112 aatttgtttttttttctg------atttattaGATTAGTATTTTTGAATGTGCTGTTTGCTTTCAATTTT-------AACATCCAGTTT-------------CTAACTCTTCTTGA-------TCTCCACCAATTTCAA-------------ACATCTTCACACTGAATCATC------------------GTTATCCAGTTTCAACACATTATT----------------------------------------AGTCCTAGAC--------------------------------ACGAAATAT-----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    58530 146 -    96895 I
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I
e caeRem4.Crem_Contig15  1318385 242 +  1794024 I

a score=862.000000
s ce10.chrX              2014014 18 + 17718866 AAAAAAATGCAATTTTTC
s caeJap4.Scaffold14268    58676 18 -    96895 AAtaaaacgctgtttttt
i caeJap4.Scaffold14268 I 146 C 0
e caePb3.Scfld02_0        495980  0 +  4147112 C
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I
e caeRem4.Crem_Contig15  1318385 242 +  1794024 I

a score=-1015.000000
s ce10.chrX              2014032 11 + 17718866 ------ATTTGCACCCA
s caeRem4.Crem_Contig15  1318627 11 +  1794024 ------ATATCCACATA
i caeRem4.Crem_Contig15 I 242 C 0
s caePb3.Scfld02_0        495980  5 +  4147112 ------------ACATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    58694 17 -    96895 tttacgaaaTACTCCTA
i caeJap4.Scaffold14268 C 0 I 7
e cb4.chrX              16869193 301 - 21540570 I
e caeSp111.Scaffold582      6926 233 -   484378 I

a score=2380.000000
s ce10.chrX              2014043 27 + 17718866 TTGCGAAATAATTTTATACTTTATAAC
s caeRem4.Crem_Contig15  1318638 25 +  1794024 TTACGAAATTAGTT--TTCCGGGAGAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      7159 25 -   484378 TTACGAAATAACTT--CCGTTTAAATC
i caeSp111.Scaffold582  I 233 C 0
s caePb3.Scfld02_0        495985 25 +  4147112 TTACGAAACTGCTA--TCCGTGAAAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    58718 19 -    96895 TTGTGAAATAGGCG--T------AAAC
i caeJap4.Scaffold14268 I 7 C 0
e cb4.chrX              16869193 301 - 21540570 I

a score=74911.000000
s ce10.chrX              2014070 91 + 17718866 CGAGAGTCATGCAATGT-----TATGTTTAAGGAAAACTGCCACCAGTTGTTTCGCAAGAAACGCGAGATCGAACGGAAGCTGTCAAAAAGGTACT
s cb4.chrX              16869494 96 - 21540570 CGAGAGTCATGCAATGTACTAAGTTTTTCCAGGCAAACTACCACCTGTTGTTTCAAAAGAGGCTCAAGATCGAGCAGATGCAATGAGAAAGGTACT
i cb4.chrX              I 301 I 1113
s caeRem4.Crem_Contig15  1318663 89 +  1794024 TAAGAGTCATGCAAt-------gttttttcaggaaaactacCACCTGTGGTTTCGCAAGAAACGCGAGAACGAGCGGAAGCTATGAAAAAGGTACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      7184 91 -   484378 CACCAGTCATGCAATAC-----ATCTTTTCAGGAAAGCTACCACCTGTTGTTTCGCAAGAAACGAAAGAACGAGCGGAAGCTGTGAGAAAGGTACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        496010 90 +  4147112 CAAGAGTCATGCaatct-----at-ttttcaggaaaacttCCACCTGTTGTTTCGCAAGAAACGCGCGAACGAGCGGAAGCGGTGAAAAAGGTACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    58737 84 -    96895 ------CGAGGCGatg------aatttttcaggaaaattacCACCTGTCATTTCGCAAGAGTCGCGAGAACGAGCGGAAGCCATAAAAAAGgtatt
i caeJap4.Scaffold14268 C 0 C 0

a score=-16394.000000
s ce10.chrX              2014161 69 + 17718866 TAATCTTCGACTATTTC--GCAAGTTTAT---GTTTTCAAAAACTGCTGA----ACATTCCATCCTGAAGAAATATTA
s caeRem4.Crem_Contig15  1318752 66 +  1794024 TTTTC--CCTCAATTTC--GCAATT---C---GTTTTGTAAATGGCTTGAAGTATTACTCTTTTC--ATAAAACTCTT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582      7275 40 -   484378 TAG----TCgccacttt---cattttttc---gttcaaaaact-CCCCCA---------------------------T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        496100 65 +  4147112 TTAGC--CCACAACTTT--GCAATTTTAC---GTTCCGAACCTGCCCCCA----CCCCCTCTCAC--ATGAACTACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    58821 44 -    96895 --------------tttgagcaattttcctAGGTTTC-------TCCTAAATCGACACATTTGCT-------------
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16869590 1113 - 21540570 I

a score=251186.000000
s ce10.chrX              2014230 456 + 17718866  
s cb4.chrX              16870703 445 - 21540570  
i cb4.chrX              I 1113 I 28
s caeRem4.Crem_Contig15  1318819 440 +  1794024  
i caeRem4.Crem_Contig15 I 1 I 1
s caeSp111.Scaffold582      7315 444 -   484378  
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0        496165 446 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold14268    58865 473 -    96895  
i caeJap4.Scaffold14268 C 0 C 0

a score=-5693.000000
s ce10.chrX              2014686 25 + 17718866 ---GAGATACCCA--GCAGAGCACACACAC
s caeRem4.Crem_Contig15  1319260 12 +  1794024 ---ATGAAAGGCAAC---------------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582      7760 10 -   484378 ---ATGAAAACTA-----------------
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0        496612  9 +  4147112 ----TGAAaccca-----------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold14268    59338 12 -    96895 GCCAAGAGACGC------------------
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16871148 28 - 21540570 I

a score=109786.000000
s ce10.chrX              2014711 138 + 17718866 ACACACACCAT-------AAAAGTGCATTTTAGTATCACCCTACGGAGCTGAATGATACCAATTTGGCCAGGACGTTGACATCAATCAAACGGAAGGAAATGGCAAAAGAAAACTTGATTGACATTCAAGCCAAGGAATTAGAGT
s cb4.chrX              16871176 138 - 21540570 ccaaatatcac-------AAAAGTGCATTTCAGTATCACCCCACCGAGTTGAACGACACACATTTGGCTCGCACGCTGACATCAATCAAGCGAAAGGAAATGGCGAAGGAGAACCTGATTGCTATTCAATCCAAGGAGTTGGAGT
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15  1319272 138 +  1794024 ---ATTCTTCCcca----aaaagtgcattttaGTATCACCCAACGGAGTTGAATGATACAAATTTGGCGAGGACACTGACATCAATCAAACGGAAGGAAATGGCAAAGGAGAACTTGATAGACATACAAGCCAAAGAGTTGGAGT
i caeRem4.Crem_Contig15 C 0 I 299
s caeSp111.Scaffold582      7770 141 -   484378 --AAGTTCTATTATGG--AAAAGTGCATTTTAGTATCACCCAACCGAATTGAATGATACCAATTTGGCCAGGACGTTGACATCAATCAAGCACAAGGAAATCGCtaaggaaaaaatgattgacaTTCAAGCAAAAGAGTTGGAGT
i caeSp111.Scaffold582  C 0 I 290
s caePb3.Scfld02_0        496621 143 +  4147112 --aaatattttgattgaaaaaagtacaTTCCAGTATCACCCAACTGAGTTGAATGACACCAATCTGGCAAGGACGTTGACAGCAATCAAGAGCAAAGAAGTTGCAAAGGAGAAGATGATTGACATCCAAGCAAAAGAGTTAGAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    59350 136 -    96895 GCGCTCACTAT--------AGAGTAC-TTTTAGTATCATCCAACGGAGCTGAACGATACAAATTTGGCTAGGACGCTGACAAACATCAAGCAAAAAGAGATGGCGAAAGAGAACTTGATAGAAATTCAGCATAAAGAATTAGAGT
i caeJap4.Scaffold14268 C 0 I 391

a score=-3842.000000
s ce10.chrX              2014849 86 + 17718866 TCGTGGTTT--------------TTTCACGTATAATTCACGTATAAGGACAATTTTAAAAATCGATATATTATATAATATTAGAAAAACATAACT-----TTATC----
s cb4.chrX              16871314 69 - 21540570 GAGTGGTTTCggcga--------attttcgaatc-tctGTG-----------------------GGGTATCGTATAGCactaaaaacctaaaatt----gtTATC----
i cb4.chrX              C 0 I 294
s caePb3.Scfld02_0        496764 79 +  4147112 ---AAGTTTCCCTGatcagtgtttttttcgagTTATTCATG---------------------------ATTAgacatttgtgaaaaaaagaaattagccGTAGTTCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=-128.000000
s ce10.chrX              2014935 111 + 17718866 TACTAATTTTGAAAATTACTCATTTACAATCATTTTAAATCGCCGGCCGATATTATATTTGCAGT--CTGTTTTGCGAGGCTTTGCTTGAGT-TGTTCACA------Ccaggggtgtgcg
s caePb3.Scfld02_0        496843 104 +  4147112 TACAAAGTCAAAGTATTA-GAGCCAACCGTCGCTTT--------GGTCgatattgt-tttgaaataactGTC------AATTTTACTTGTTCATGTTCATATTTCTTCCAAAGTTATGAG
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold14268    59486 391 -    96895 I
e cb4.chrX              16871383 294 - 21540570 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=0.000000
s ce10.chrX              2015046 131 + 17718866 gcaaatctcaaaatttgccgagctcagcaaattTTaaactactgaattcttaacactcatctggtttctgaataagttccgtgtagtatgtctgtttaagcatcaaaataacgcaatcttgtgtcatttta
e caePb3.Scfld02_0        496947 115 +  4147112 I
e caeJap4.Scaffold14268    59486 391 -    96895 I
e cb4.chrX              16871383 294 - 21540570 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=220.000000
s ce10.chrX              2015177 35 + 17718866 ctaattttttggcgaa--------aaaatcaatggtttcagtc
s caePb3.Scfld02_0        497062 38 +  4147112 CTATTTTCCTGGTAAAATATATAGAAAACAAGAGgttt-----
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I
e cb4.chrX              16871383 294 - 21540570 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=-1923.000000
s ce10.chrX              2015212 58 + 17718866 aaaattgcactgttaaatttttgacgtgtgcggcaagtttcgaaatttgccgagctcg----
s cb4.chrX              16871677 42 - 21540570 -------------aaacttttttcGCTAAA------ATTTTGCGTTTT-TCGGCTTCAACAt
i cb4.chrX              I 294 C 0
s caePb3.Scfld02_0        497100 42 +  4147112 ----------tgtacgtttttttgtttgtg------tttttgagtCTTATCGAACCCA----
i caePb3.Scfld02_0      C 0 I 217
e caeJap4.Scaffold14268    59486 391 -    96895 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=-144.000000
s ce10.chrX              2015270 61 + 17718866 gcaaattcggcaaatcGGGAAAATTTGCGGGAAAAGTTACAGCAGCTGACATCCAGCGGGA
s cb4.chrX              16871719 32 - 21540570 ----------------------acttttggaaaatgtt-------ttaacATACTTCTGGA
i cb4.chrX              C 0 I 145
e caePb3.Scfld02_0        497142 217 +  4147112 I
e caeJap4.Scaffold14268    59486 391 -    96895 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=0.000000
s ce10.chrX              2015331 144 + 17718866 CTGTATTTTCGTAAACTGGGTGTTTTCACAAAATCTAGTATCATAATAAAAAAATTTCCACAAAGTTTTTTTTTCACTTTTTGCATTGTTATTTCTAATTGTTATTTCACAAAGTAATTAGAACAATTTATAAGGTATACAAAT
e caePb3.Scfld02_0        497142 217 +  4147112 I
e caeJap4.Scaffold14268    59486 391 -    96895 I
e cb4.chrX              16871751 145 - 21540570 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=723.000000
s ce10.chrX              2015475 33 + 17718866 TATTAATCATGCATAACAAAACTCAAAATTGAC
s caePb3.Scfld02_0        497359 33 +  4147112 TACtgctcattttggaaaaaattctgaatgaac
i caePb3.Scfld02_0      I 217 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I
e cb4.chrX              16871751 145 - 21540570 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=-2005.000000
s ce10.chrX              2015508 35 + 17718866 ---------tataattttaaatttt-------aatattatCAGCAAAATTG-
s cb4.chrX              16871896 36 - 21540570 -------TTCAAC-TTCAAGGGATT-------TACGGTATCACCAAATTTA-
i cb4.chrX              I 145 C 0
s caePb3.Scfld02_0        497392 52 +  4147112 tcaaattttcatcacTCAAAAGTTCCAACAGATATAGCAATACAAATATTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I
e caeSp111.Scaffold582      7911 290 -   484378 I
e caeRem4.Crem_Contig15  1319410 299 +  1794024 I

a score=2115.000000
s ce10.chrX              2015543 10 + 17718866 TTTCAGAAGA
s cb4.chrX              16871932  7 - 21540570 ---CAGACGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1319709 10 +  1794024 tttcagccgt
i caeRem4.Crem_Contig15 I 299 C 0
s caePb3.Scfld02_0        497444 10 +  4147112 TTTCAGGCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I
e caeSp111.Scaffold582      7911 290 -   484378 I

a score=18384.000000
s ce10.chrX              2015553 373 + 17718866 CTCCGCAGTCTTTTAAAAGACAGCCATATTCCTCTAGGGTCAAAGCATCCAACCGAAACAATGACCGTATCAGTTGCCAAAGATTCAGAACT------------GGATGTGGACAACGAAGATTATTCGGATTACCCGGAGGGTGAG-CAGTGCTCACTG-AGCACCCAGAGAAT--ACATTTCTTTTATTTTATATTTTCATCTTTTTAGAACCGGATCTAGTGGAAACTGCTGGGCACTCAGAACGAGGTAGTATTCAAATTTAATTTATTAAGAAAAATGT-------------TCAATTTCAGATGAAGAATATGATGAAGTTTTCGAAGAAGT---ACACAATCGAA------------AGCTGGACAAAAGCAGAGTGAAAACAGCATCTAAGGAAAGAAATGAGTATGGT-----------------
s cb4.chrX              16871939 357 - 21540570 CTACGAGCACTTCTCCGAGATGTACCTGGTCCTTTGGAACACAAACATCCTACACAATCgatggaaatttcagaaattccagaatcggAACC---------------TAGCGAGGAGGAAGTAGAATCCGATTACCCTGAAGGTAAG-CCCCACTCGTTA-GTACCCTTATAAGC--AAATTCCTTG---------------------CAGAACCCGACCAAGTGGAAGGAAACGGATTAGCAATGAAAggtgaaatttcgaattcatgAGTGCAACGAAATTT-------------TATATTACAGATGACGAGTTAGATGAGGTATTCGAAACGCC------CAAGAAAG------------AGACCACGAAGCTAAAAGGG---TCC---AGCAAGGAGAGGAAGGAGTAAGAAAGCACCTGTCCTTTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1319719 378 +  1794024 cTTCGTGTTCTTCTGAAAGATGCGCCAACAGCAGTGGAACAGAAACATCCAACACAGACAATGCAAATACCGGAAGTACCCGAAACCGAAGC------------AGATAATGATGACGATGGTGACTCTGACTACCCGGAAGGTACG-TTTGACTAACTACGAGTTATTTGAAGcggaaaatgtttg--------a----------tttagAACCCGACCAACTGGATGCTAATGGGTTATCTTTAAGAGGCA------CGAACTACGTAATG----GAAACTTTTCTCTAATTATCTATGTTTCAGATGACGAATtcgaaaacgtttttgaagagac---aaacacgaaaa------------aggaaataaaatcaaaagagaaatcagggagcaaagataaaaatGCGTAGGGAAACCCACCTGCAGACGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      8201 296 -   484378 CTTCGAAGCCTTTTGAAAGACAATCATGTCCcactgaataaaaaacacaTGACACAGTCTATGCAACTACCAGAAAATCCAGATTCAGAACC---------TGAAGAAGACGAGGAAGACGACGAATCTGATTATCCTGAAGGTTGGAATTCATTGGGAT------ATCGATAAT--AGACAATACG--------A---------TTTCAGAACCCGatcaattggaaaacaat------------------------------------------------------------------------gaTGCCGAGTATGATgaagttttcgaagaaatttcag-caaaaaaatc--------------agcgaaaatcaaagaaaaatcggcgggaaaagacagaaatGCGTATGAA-----------------
i caeSp111.Scaffold582  I 290 C 0
s caePb3.Scfld02_0        497454 383 +  4147112 TTGCGTAGTCTTCTGAAAGATCATCATTTCCCGGTTGAACAGAAACATCCGATACAATCCATGACAATCCCTGACGCTCCGGGGCCTGAACCCAATTCTAGTAATGAAGACGAGGAAGACGAGGAATCTGACTATCCGGAAGGTCGG-TTTTATTCCCAA------TTAGACAAC--ATAtgatctgaa----ata---------tttcagagcCTAACCAACTGGAAAACGAGGATTTCTCGGAACTGGGTA------GGGTCTAAAATACACTTCGagattcatcatttt-----tatgtt-cAGATGACaattttgatgaagttttcgaagaaGCCGTAGTCAAGAAAGTTGAGAAGAATGGGAAAGCGAAATCCAAGCCAAAAGCAGAAGGAAAAGATAGAAATTCGTGAGAT-----------------
i caePb3.Scfld02_0      C 0 I 35
e caeJap4.Scaffold14268    59486 391 -    96895 I

a score=-2554.000000
s ce10.chrX              2015926 34 + 17718866 -----------CATTGTTCGAAATCAACAAAAACGTTTCTCTGAT
s cb4.chrX              16872296 22 - 21540570 -----------TTATGTACGA------------TTCTCTTTTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1320097 20 +  1794024 -----------TGTTGTAcga--------------atattttaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      8497 31 -   484378 TATCACCTGTTTCTTACATGC--------------ACTctataat
i caeSp111.Scaffold582  C 0 I 6
e caePb3.Scfld02_0        497837 35 +  4147112 I
e caeJap4.Scaffold14268    59486 391 -    96895 I

a score=3935.000000
s ce10.chrX              2015960 5 + 17718866 TTCAG
s cb4.chrX              16872318 5 - 21540570 TTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1320117 5 +  1794024 ttcag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      8534 5 -   484378 tttag
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0        497872 5 +  4147112 TTCAG
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold14268    59486 391 -    96895 I

a score=100942.000000
s ce10.chrX              2015965 154 + 17718866 GTTGGCGAAAAAGTACGCAGAGCAAAACGCAAAGTTGAAACTGAAACTTAAAGAGGTCAAGAATAACTATGCTTCAATGCTCGAGAAAAATAAAAAGAAAGGTGAAGAATTTATCAAGCAAAGTGAAAACTCGAAAGCAGGTA----------------TGATTTTGAAA
s cb4.chrX              16872323 144 - 21540570 ATTGGCTAAGAAATACGCAGAgcagaatgaaaaattgaagcaaaaactgaaagagatGAAAGCAAATTATGTGTCAATCGtggagaaaaataagaagaaaggGGAAGAGTTTGCGAAGCAAAGTGAGAATTCCAGAGCAGGta----------------t----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1320122 144 +  1794024 actcGCTAAGAAGTACGCCGAACAAAACGCCTTGCTCAagcagaaattgaaagaagtgAGAACAAATTATGTTTCAATGGtggagaagaacaagaaaaaaggggaagaatTTGTGAAGCAGAGTGAAAACTCCAAAGCAGGTG----------------C----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      8539 150 -   484378 attgGCCAAAAAATATGCCGAGCAAAACGCTaagctgaaagaaaaactgaaagaagtGCGGACAAATTATGTTTCAATggtaga-aaaaacaagaagaaagcAGAAGACTTTGTCAAACAGAGTGAGAACTCAAAAGCAGGTGA----------GAAATC---------C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        497877 145 +  4147112 GTTGGCGAAGAAGTATGCCGAGCAAAATGCTAAACTAAAAGAGAAGTTGAAAGAAGTGCGGTCTAACTATGCTTCAATgcttgagaaaaataagaagaaagggGAAGAATTCGTAAAGCAGAGTGAGAATTCAAAAGCAGGTA----------------T---------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    59877 158 -    96895 GCTTGCaaaaaaaTACGCAGATCAAAATGCAAAGTTGAAACAAAGGCTCAAAGAGGTTAAGAGCAATTATGTGAACATGTTGGagaagaataaaaagaaggTGGAAGAAATTGTGAAGCAGCGAGAAAATTCAAAAGCAGGTGAGATGAGATTTGAAA------------
i caeJap4.Scaffold14268 I 391 I 720

a score=-22435.000000
s ce10.chrX              2016119 100 + 17718866 AGTATTGAAAAGTATTTTTTAAACCAAATGATTACTGTTTCGTTT----CGAACAGTTTCATGATCAAAATTATTCCAAAATCAACAATCTAAAGTATTTCTTC
s cb4.chrX              16872467  47 - 21540570 --------------------aaaacgaaaaatga---------ttaaaatggctgatt-----------------------tcagaaatttgaatt-----tat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1320266  41 +  1794024 -----------------------GTGCACTACCA---------TT----TCATCTGTC-----------------------TCactcatttttatca----ttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      8689  31 -   484378 AGAGttgaaa-------taagaaacaaaTTAATA---------TT----TG-----------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        498022  39 +  4147112 AGTG----AA-------TATCAAGTGAATTAAAA---------TT----TGAGGGGT-------------------------------------GCA----TAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    60035 720 -    96895 I

a score=117683.000000
s ce10.chrX              2016219 161 + 17718866 TTCAGTTGTCGAAAAAACCGTCCAAATCAGCACTGTTCTCGATTCACTGCAGAAAGAACGTGAAGATTTGTCAGAGATCAGAAAGAAAAACGAGCAGAAAATTGAAGGACTATCGCAAGAGTTGATTGAGGCTTACGGAGAAATTGATGCGTTGAAGTAAG
s cb4.chrX              16872514 161 - 21540570 tttagTGGTAGAGAAAACCGAGGAAATTAGTATTGCCCTGGATTCACTTcaaaaggagaaggaggatTTGGCAGTtgccaaaaagaagaatgaagaaGAGATTGATAATTTGAATCAGGAGTTGATCGAGGCATATGGTGAAATTGACGCATTGAAGTGAG
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig15  1320307 161 +  1794024 ttcagttgtggAGAAAACGGTTGAAATTAGTACTGTGCTGGGAAATCTTCAAAAGGAAAGAGAGGATTTATCGGAGATAAGacgaaaaaacgaggaaaaaatagaggatctATCACAAGAGTTGATAGAAGCGTATGGTGAAATAGATGCATTGAAGTGAG
i caeRem4.Crem_Contig15 C 0 I 33
s caeSp111.Scaffold582      8720 159 -   484378 --CAGTTGTggaaaaaacagttgaatTGAGTACTGTGTTGGACACACTTCAGAAGGAAAGAGAGGATTTGTCTGAAAtaagacgaaaaaatgaggagaaaatagaagatcTTTCACAAGAATTGATAGAAGCGTATGGAGAGATAGATGCCTTGAAGTGAG
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0        498061 161 +  4147112 TTCAGTTGTGGATAGGACAGTTGAAATCAGCTCAGTGTTGGATACTCTTCagaaagaaagggaagaattatctgaagcaaaaaagaaaaatcaggaaaaaatagaGGATTTGAATCAAGAGTTGACTGAAGCATACGGTGAAATTGATGCTTTGAAGTGAG
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold14268    60755 160 -    96895 TTCAGTGGTGGAGAAAACAGTGGAAATCAGTTCTGCTTTGGAGTCACTTCAAAAGGAGCGGGAAGGTTTCGTAgagatcaaaatgaaaaatgaggaGAAAATAAGCGATTTGTCACAAGAATTAGTTGAAGCTTACGGGGAAATCGACGCTTTAAAGTAA-
i caeJap4.Scaffold14268 I 720 C 0

a score=611.000000
s ce10.chrX              2016380 25 + 17718866 TGAGAACGAG-----AAATGTttaaagtaa
s caeJap4.Scaffold14268    60915 29 -    96895 -GAAAACTAGTGTTAGAATGttctaaacaa
i caeJap4.Scaffold14268 C 0 I 137
e caePb3.Scfld02_0        498222 32 +  4147112 I
e cb4.chrX              16872675 39 - 21540570 I
e caeSp111.Scaffold582      8879  2 -   484378 I
e caeRem4.Crem_Contig15  1320468 33 +  1794024 I

a score=0.000000
s ce10.chrX              2016405 733 + 17718866  
e caePb3.Scfld02_0        498222  32 +  4147112 I
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872675  39 - 21540570 I
e caeSp111.Scaffold582      8879   2 -   484378 I
e caeRem4.Crem_Contig15  1320468  33 +  1794024 I

a score=202.000000
s ce10.chrX              2017138 26 + 17718866 ttccag-aactactcctccattaC--CAA
s caeSp111.Scaffold582      8881 29 -   484378 TTCTAGTAACAGTTTCTCGATTTCAACAc
i caeSp111.Scaffold582  I 2 C 0
e caePb3.Scfld02_0        498222 32 +  4147112 I
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872675 39 - 21540570 I
e caeRem4.Crem_Contig15  1320468 33 +  1794024 I

a score=-711.000000
s ce10.chrX              2017164 3 + 17718866 -AAT
s cb4.chrX              16872714 3 - 21540570 aaa-
i cb4.chrX              I 39 C 0
s caeSp111.Scaffold582      8910 3 -   484378 ata-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        498222 32 +  4147112 I
e caeJap4.Scaffold14268    60944 137 -    96895 I
e caeRem4.Crem_Contig15  1320468 33 +  1794024 I

a score=33842.000000
s ce10.chrX              2017167 114 + 17718866 TTTCAGAATGAACAATGAGAAACTGCAAGAACATTTGGGTGATTTGGAGCAACGTGTTGGACATTTAAAAAT--TCAGCC--GGACTATGAGAG---CCTTCCA-CCATTAAAGTGAACATT
s cb4.chrX              16872717 117 - 21540570 tttcagaatgcacAATGAGAAACTACAAGAGAATTTGAAAGATCTAGAAGTTCGATTCGGAAATGTCAATCTAAGCGACT--ATGAGACCAATA---TCATGCATCCTCTAAAGTGAAGATT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15  1320501 114 +  1794024 TTTCAGAATGCACAATGAAAAGTTACAAGAGAACTTAAGAGAATTGGAGTCCAGAGTTGGAAATCTTAATAT--TCAACC--TGAATACGAAGG---TCAACCA-CCATTAAAGTGAACAAT
i caeRem4.Crem_Contig15 I 33 C 0
s caeSp111.Scaffold582      8913 111 -   484378 tttcagaatgcaCAATGAGCAGCTACAAGATAATTTGAGAGATCTAGAAAATCTAGTCGGAAAT----------GTAACCGTCAGTATCGAAAACAACAGACCA-CCTCTAAAGTGACTACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        498254 114 +  4147112 TTTCAGAATGGATAATGAGAGATTACAAGAAAACTTAAGAGAGTATGAAAACAGAATGGGAAATCTCAATA---ATAACC--CTGCCTTCGAAGC--TCGTCCG-CCATTAAAGTGAACACT
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold14268    60944 137 -    96895 I

a score=-1604.000000
s ce10.chrX              2017281 6 + 17718866 TTGATA---
s caeRem4.Crem_Contig15  1320615 6 +  1794024 ---CTATCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582      9024 6 -   484378 ---ATTATA
i caeSp111.Scaffold582  C 0 I 22
s caePb3.Scfld02_0        498368 6 +  4147112 ---ATATCc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872834 9 - 21540570 I

a score=295.000000
s ce10.chrX              2017287 10 + 17718866 TTGTTTGTTT--
s caeRem4.Crem_Contig15  1320621 11 +  1794024 -TAGTTATCTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        498374 10 +  4147112 ttaattattt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872834  9 - 21540570 I
e caeSp111.Scaffold582      9030 22 -   484378 I

a score=136.000000
s ce10.chrX              2017297 6 + 17718866 TTGttc
s caeRem4.Crem_Contig15  1320632 6 +  1794024 TTTATC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        498384 0 +  4147112 C
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872834 9 - 21540570 I
e caeSp111.Scaffold582      9030 22 -   484378 I

a score=0.000000
s ce10.chrX              2017303 283 + 17718866 aaaggtgaagtagagtcgttttgaaattttgctttaaatcagagaaaatagaccataatTTTTTATTTTATTTTGGCGGAAACCGGCAGAATTAAATTTGAATTCCCGCGTATTTTTGAGTTTTTTTTTTCTTTTTTTTCTTTCGCATTTTTTCGTTAAGAAGACTAAAAAGACAAAAACCCATAAAATATCGTTTAGAAGAATTAAACAATTAAaaaaatatttaacagttacattaggttattagtgtttattttctgtcatttaaagcaaaattccaaaa
e caePb3.Scfld02_0        498384   0 +  4147112 C
e caeJap4.Scaffold14268    60944 137 -    96895 I
e cb4.chrX              16872834   9 - 21540570 I
e caeSp111.Scaffold582      9030  22 -   484378 I
e caeRem4.Crem_Contig15  1320638   0 +  1794024 C

a score=602.000000
s ce10.chrX              2017586 9 + 17718866 cgactctac
s cb4.chrX              16872843 9 - 21540570 CGACTTTAT
i cb4.chrX              I 9 C 0
e caePb3.Scfld02_0        498384 0 +  4147112 C
e caeJap4.Scaffold14268    60944 137 -    96895 I
e caeSp111.Scaffold582      9030 22 -   484378 I
e caeRem4.Crem_Contig15  1320638 0 +  1794024 C

a score=29.000000
s ce10.chrX              2017595 3 + 17718866 tgc
s caeJap4.Scaffold14268    61081 3 -    96895 TAT
i caeJap4.Scaffold14268 I 137 C 0
e caePb3.Scfld02_0        498384 0 +  4147112 C
e cb4.chrX              16872852 0 - 21540570 C
e caeSp111.Scaffold582      9030 22 -   484378 I
e caeRem4.Crem_Contig15  1320638 0 +  1794024 C

a score=1313.000000
s ce10.chrX              2017598 6 + 17718866 actttt
s cb4.chrX              16872852 5 - 21540570 -CCTAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0        498384 6 +  4147112 atttat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61084 6 -    96895 ATCTAT
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582      9030 22 -   484378 I
e caeRem4.Crem_Contig15  1320638 0 +  1794024 C

a score=1236.000000
s ce10.chrX              2017604 10 + 17718866 aaTGACACAC
s cb4.chrX              16872857 10 - 21540570 AACGACAAGT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15  1320638  7 +  1794024 AACGAC---T
i caeRem4.Crem_Contig15 C 0 I 3
s caePb3.Scfld02_0        498390 10 +  4147112 aacGGCAGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61090 10 -    96895 CACGACAAAA
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582      9030 22 -   484378 I

a score=105571.000000
s ce10.chrX              2017614 303 + 17718866 GTCGTTTCAGTATACCTCGACTCGACATGACCGATATTGACAATGACGAGAACGGCACGTTGCACGAGTTTTCTGAAAGAAGTGTTTTATCGAATCTTTCTGAATTCGATCATGTACACCTTGCTGGTGCATTAGCAGAAATTGCTGGTGCTCATTGTGAGCGATTGCGTATGATCACT-------CAATCAT--AACAGACTACTTTTATTACT-----------------TCCCACTC-----TTTCCTGTCAAT-CTATCTATTAGTATACAACCTG---TCTG-----ATTTTTTTCCCCT-GATGT-----GATAATTTTGAAC-ACTGGTCAGCCCTTTTTCTA--
s cb4.chrX              16872870 317 - 21540570 GTCGTTTCAGTATACCTCGTCTCGACATGACCGATATTGACGTTGATGAAAACTGCACGTTGCACGAATACACTGATAGAAGTGTTTCAACCGATATTTCGGAATATGATCATGACATTCTCGCCGGTGTGCTGGCAGAAATTGCCGGTGCGCACTGTGAGCGGTTGCGATTGATTACC-------CAAGAAT--AATGgacctttttttccaaa-----tcatttccaaatttccaccC-----TTTCCTATCCAT----TTTATTACTGTTAAACCTA---CATTAGCAGAGCTTCTTTC-------ATAGAAGAGTAACTTCTATAGAACGGCCGACCCCTTGTtta--
i cb4.chrX              I 3 I 802
s caeRem4.Crem_Contig15  1320648 302 +  1794024 GTCGTTTCAGTATACCGCGGCTCGACATGACCGATATTGACAATGACGAAAACTGCACGTTGCACGAATTCACTGAAAGAAGTATTTCATCGAGTATTTCCGAATATGAACATGAAATCCTTGCAGTTGTACTGGCAGAAATTGCTGGTGCACACTGTGAGAGATTACGGTTGATCACT-------CAACAATAAAACGAATACTTTCTCTCGCG-----TTTGCTGTGACATCTCACCC-----TTTCCTATC----------ATTA-TATCTatcttt---catt-----tccttttttc-------gt-----gataatttttgaacactggTCCATCTTTCAATAT--
i caeRem4.Crem_Contig15 I 3 I 1
s caeSp111.Scaffold582      9052 294 -   484378 GTCGTTTCAGTATACCACGTCTCGACATGACTGATGTTGGATTTGATGAA---TGCACGTTGCACAGTAAcactgaaagaaagaattcgGCCGCAGTTTCAGAGTTTGATCATGAACACCTTGCTGGTGCACTAGCAGAGATTGTTGGCGCACATTGCGAAAGGTTGAGATTTGTCGAC-------caata----aatgaatattttcctTCCGAAACATTCTCCT---------CACCTAAATATTCTCTACC---------------TATATATTCTCTGCCAAT-----ATTCTTCTGT-------GT-----GATAATTACTGAA-ACTGGTTTATACTTGATTTG--
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0        498400 302 +  4147112 GTCGTTTCAGTATTCCACGACTCGACATGACCGACATTGACGTCGATGAA---TGCACCTTGCACGATATCACTGAAAGAAGTAATTCatccgatttttccgaatttcaccTTGAACAGCTTGCTGGTGCATTAGCAGAACTTGCTGGTGCACATTGTGAGAGGTTGA-ATATACTAACCCAAACACAATA----AATGAATACTATCTCTTTCTACCGCTTTCCTGTGTGCTTCCACCC-----TGTCCTATC---------------CAattattcttt--catt-----tttcctattcC---AAAGT-----GATATTTCCCAAA-GCTGGTCTGTATTGTA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61100 309 -    96895 GACGTTTCAGTATTCCACGTCTCGACATGTCGGATATTGACAATGCTGAGAATTTCACGTTGCACGAATTCACAGAAAGAAGCGGCGCATCCAAAACTTCCGAGTTTAATCCCGAACATCTTGCTAAAGCTGTCGCAGAAATTGTCGGAGCACATTGTGAACGGTTGAAAATTATTACC-------CAGT-----CATGAGCTTTTCTCTTTGTT-------------GTTTTATCACCT-TGTGTATTTTGTCAAAGATTATTACCATGGTCCatgata---tttt-----attttttatccccAAATGT-----GATATTCTCA----ACTGGTTAGCCAattctttcca
i caeJap4.Scaffold14268 C 0 C 0

a score=-1406.000000
s ce10.chrX              2017917 27 + 17718866 -TTTTCTTCCAATTAATTTGATTCTGCT
s caeRem4.Crem_Contig15  1320951 10 +  1794024 ------------------TGCTTTTGCA
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582      9346 22 -   484378 ------agttgatcatttttctttcact
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        498702 10 +  4147112 ------------------TCATTTCGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61409 28 -    96895 ttttttcccccattttttcaattttgct
i caeJap4.Scaffold14268 C 0 I 427
e cb4.chrX              16873187 802 - 21540570 I

a score=-156.000000
s ce10.chrX              2017944  9 + 17718866 ---------------GTGCAATCC
s caeRem4.Crem_Contig15  1320961 24 +  1794024 GCTATGAACACTGTTATGGAATAC
i caeRem4.Crem_Contig15 C 0 I 380
e caePb3.Scfld02_0        498712  0 +  4147112 C
e caeJap4.Scaffold14268    61437 427 -    96895 I
e cb4.chrX              16873187 802 - 21540570 I
e caeSp111.Scaffold582      9368  0 -   484378 C

a score=-16327.000000
s ce10.chrX              2017953 389 + 17718866 CAATTGAGTGTGAAAAT-CTTTGTGTTGAAAACTGTAC--AATTTAGTTTATACTACATATTCGAAAATTAAATCCTTCTGAAACTTCtaaataaatttttttaaaattttttaaataaagttttttattGTTTTAACATG--TTACCTGGCAAAATTTAACCTCT----ATAAGTGGAGTGTCGCCACCACTGGGGAAACTGTTC---------AAAACTGCTT----------------CTATTGT-GCTGAAATTATCAAAG------TCCAC----CGTAACAACTTTTCAAAAAAATTGTGCACTATTTC-CTTACATATTAAATTGCGAAGAAAACTACAAAAAAAGTGACGACCCGGAACTTATTCCTCCCTAATATTTTTTACGATTCCTGCCAAG--------------TGAGCGCAT-TTTTGGCATTACACGGTG------TT-TT
s caeSp111.Scaffold582      9368 347 -   484378 --aTCGCGTGTGCACT--CCGttccttcaaaaatatattaaatTTA-------------ATCATacaa------actttcgaaaa----aa-----tgttgctAAAATGTTCTCAGAACAGGTTTTC-tcgtttgaaaatgaataacttTGGAGAAGcgatatttc----tcattttg-atgaTATATGCAATGTAACATGTGTTTTTATCTTGAATAGCTTCTTATTGTACCTGCCAAGCCCAATCTAACTCCCAATTTTTCATAGCATCTCCAATATGTAtatcaaacttttttataatcTTCCCAGATTGTT-CTCATat------caatgaataaaatt--aacAGA---GATGA--------------GTGTTTAGAATTTATTG----------------------------TGAAAATAT------------CATTGAG------TTATg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        498712 368 +  4147112 --ATCGCGTGAGCACCTGCACTGCACTAAAAAGTactt----tctc-------------atcaaaaaatgaagtgttttcgaaac----aaacaCTCAATATCAAAA--CTCTCCATTCATATTT-----GTTTGAGGAAGTATTTTTTAGAACAGTTCAGATTTCAGTTCCATTCAGAATGGTTTCTGAGAAG-----tgtgtttct-------aaaatttctt----------------tcATGTCAACTGCCATTTATATAT------TTCAATAAATACCGCAATTATTAAGACAGTAGTTCAACCTTCTTACTTTTAT--------ACGAGTAAAAAG--AATATAATTGATAa--------------gtgtttcagatttttcacaATG-ATgccaaaaatagtttttcaattgaaaatacgTTTTTTATCTACATGAAGTGTATTTTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    61437 427 -    96895 I
e cb4.chrX              16873187 802 - 21540570 I
e caeRem4.Crem_Contig15  1320985 380 +  1794024 I

a score=-36892.000000
s ce10.chrX              2018342 747 + 17718866  
s caeRem4.Crem_Contig15  1321365 464 +  1794024  
i caeRem4.Crem_Contig15 I 380 C 0
s caeSp111.Scaffold582      9715 411 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        499080 482 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    61437 427 -    96895 I
e cb4.chrX              16873187 802 - 21540570 I

a score=-9708.000000
s ce10.chrX              2019089 45 + 17718866 TCGAATTTAAAAATACAAAAAAAATCAGATCACATTTATTCTAAT
s cb4.chrX              16873989 33 - 21540570 tctgACCTACCagtataaaaaaattt------------tctaaaa
i cb4.chrX              I 802 C 0
s caeRem4.Crem_Contig15  1321829  4 +  1794024 -----------------------------------------gaga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     10126 18 -   484378 ------------------CTTAATTTAA---------ACTCATaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        499562 14 +  4147112 ------------------cccaatt-------------ctcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    61437 427 -    96895 I

a score=47678.000000
s ce10.chrX              2019134 63 + 17718866 T-----------------TTCCAGATGATAACTTGAATGTTGAGCACATGAATTCTGACTGTGACCAACACATCAAGGta------
s cb4.chrX              16874022 63 - 21540570 t-----------------tttcagatgataaCTTGATTGTTTAGCACATGAATTCTGACTGTGACTATAACATCAAGGTA------
i cb4.chrX              C 0 I 373
s caeRem4.Crem_Contig15  1321833 63 +  1794024 t-----------------tttcagatgataacTTGATTGTTTTGCACATGAATTCTGACTGTGACGATAAAATTAAGGTT------
i caeRem4.Crem_Contig15 C 0 I 13
s caeSp111.Scaffold582     10144 80 -   484378 ttaatcgaaaaatattcatttcagatgatAACTTGATTGTTTGGCACATGAATTCTGAATGTGATTATAACATCAAGGTA------
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0        499576 63 +  4147112 t-----------------ttccagatgataACTTGATATTTCGTCACATGAATTCTGAAAGTGATCATAACATCAATGTA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61864 67 -    96895 t-----------------tttcagatgaTAACTTGA--ATTGTTCACATGAGTTTTTGCAGTGAGAACAAGAACAAGATTAAGGTA
i caeJap4.Scaffold14268 I 427 C 0

a score=94906.000000
s ce10.chrX              2019197 168 + 17718866 tatttatattttttctaatactttaaatttataCAATGTA----TACACATTTCAGAGTAGAGTTAGATATCATCAATCCGAATTTTGTACGAAACTAAACTATGTGTATACTTCTCGCCAGTGTGACGAATATTTCAACTATTTGGCTGAATTGAGAAGAATTATTTTTGG
s cb4.chrX              16874458 161 - 21540570 -------tttttgtatatctcatt---gTCCGGTACTGTA-ACTCCTACCTTTCAGAGTAGCAGTAGATATTTCCAATCAGAATCGTGTACGAAACTGAATTATGTGTATACATCTCGACAGTGTGACGAGTACTTTGAATATTTGGAAGAGCTCCGAAGAATCATTTTTGG
i cb4.chrX              I 373 I 156
s caeRem4.Crem_Contig15  1321909 149 +  1794024 -------ACTTGGCAGAAGTCAtt---ctatgatttt-------------ttttagagTAGCAGTAGATATCATCATTCAGAATCTTGTAGAAAGCTAAACTATGTGTATACATCTCGCCAGTGCGACGAATATTTGGATTATTTggaagaattgagaagaatcaTCTTTGG
i caeRem4.Crem_Contig15 I 13 I 1
s caeSp111.Scaffold582     10231 155 -   484378 AAATGACAGTTCTAATAACtcttt---ctta--------------tcattttataGAGTAGCAGTAGATATCATCAATCAGAATCTTGTACTAAACTAAATTATGTTTATACGTCCCGTCAGTGTGACGAATACTTTGAATATTTGGACGAATTGAGAAGAATCATATTTGG
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0        499639 157 +  4147112 -----ATGGTTTTGAGAATGCTTC---TTTacacttt-------ctgattttttagagTAGCAGTAGATATCATCCATCAGAATTTTGTACAAAATTGAACTATGTTTATACAACTCGACAGTGTGACGAGTATTTCGAATATTTGgcggaattgagaaaaatcatttttgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    61931 165 -    96895 ----TGTAatataaaaatataaat---tatcAACAACTTGCAATTTGATGTTTCAGAATACCAATAAACATCATAATTTTGAACTGTGTACAAAACTAAACTATGTTTACACTTCTCGTCAGTGCGACGAATATTTAAATTATCTGGAAGAATTGAGAAGAAtaatttttgg
i caeJap4.Scaffold14268 C 0 C 0

a score=422.000000
s ce10.chrX              2019365 1 + 17718866 T
s cb4.chrX              16874775 1 - 21540570 T
i cb4.chrX              I 156 I 19
s caeSp111.Scaffold582     10386 1 -   484378 T
i caeSp111.Scaffold582  C 0 I 88
s caePb3.Scfld02_0        499796 1 +  4147112 c
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    62096 1 -    96895 t
i caeJap4.Scaffold14268 C 0 C 0
e caeRem4.Crem_Contig15  1322058 1 +  1794024 I

a score=-22442.000000
s ce10.chrX              2019366 100 + 17718866 GACAAACAATATTCGGAAAAAATGAAAC-----------CAAGTAAGTTGGAAAATAAAACCAGAAATGT-----AATGAAAATTGT--------------------TTCAGAA--AACAATTGTGACCCAATTAGAC
s cb4.chrX              16874795 131 - 21540570 taca---gcaaccgagataatataGTTCAAATAAATGGAACGGGCTTCtatcaga--aatacagaaatacGGGGGAAGTACGGTaatgaaaattgcgaaaatccCATTTCAGCAGAAACGTTGCCAACACACCCAA--
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig15  1322059  95 +  1794024 CATA---ACTACCGCAGAACCATGTCTT-----------Ctggtattttttcaaag-aaaaaagaaacac-------acacaattat-------------------tttcaggtaCTGCGTTTGCTTCAAACCCTG--
i caeRem4.Crem_Contig15 I 1 C 0
s caePb3.Scfld02_0        499797  78 +  4147112 cACA---ACTATCCAGATAACATGATCG-----------CCGGTAAGTTCTACGAT-TTTCGAGgaacgt-------tttcaatttt--------------tccccgTCTAGGA------------------------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold14268    62097  82 -    96895 aaaa---acTATCGA---AACATGTCAA-----------CAGGTAT-----------Atagtaaaaatgt------tttataaCTTT-----------TGATTCTGTTCCAGAAGTCACGAATGAGC-----------
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     10387  88 -   484378 I

a score=105362.000000
s ce10.chrX              2019466 169 + 17718866 ACTCAATTCATTATCGCACACGGGACGGCAAAACTCTGGTTTATGAGTTGGGAAATACGTCAGACTACGGCATTAATCT------TTTTGCAATACCGTCTGAAACAAAAACGGTTGCAACAAAAACGTATTATGCAGAAGAACACGTACTCACTCAGCCGGAGACTTGTCGAGT
s cb4.chrX              16874926 169 - 21540570 GTTCCGTTCACTATCACACTCAAAATGGCAGAACTCTAGTCTACGAAATCGGAGATTCCGCACACTATGGCATCACACT------CTCGCAACTTCCatctaaaactgaaaaattggtcaCAGAAACGTTTTGTGCTGAAGAACACGTACTCGCCCAACCggaaacttccaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1322154 169 +  1794024 ACTCCATCCAATATCACACTCAAAACGGTAAAATTTTAGTCTATCAGATCGGAGACACATCAGACTACGGCATCACTCT------CTCACCAGTTCCGTCAGAAACTGAAACTCTGGTCACAGAAACGTTTTGTGCAGAAGAACACGTACTCAATCAGAGAGAAGTTTCCAAAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     10475 169 -   484378 AATCGATTCACTATCACACACAAAGTGGAAGAACTCTAGTGTATCAGATTGAAAATGCGTCAGACTACGGAATCAAACT------GGCTCCAACTCCATCAAGAATAGAAACATTGATCACGGACACGTATATTGCAGAAGAACACGTACTTGCCCATCTAGAAACTTCCGAAAT
i caeSp111.Scaffold582  I 88 C 0
s caePb3.Scfld02_0        499891 175 +  4147112 ATTCCATTCATTATCATACCAATTGCGGGAAAACTCTGGTCTATCAAGTCGACGATGTATCAGAGTACGGAATCAAACTCTCGTCGTCACAAATTTCTGCAAGAACCGAAACTCTGATCACAGACACGTACTATGCAGAAGAACACGTACTCACTCTtcctgaaacttctgaaat
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold14268    62179 169 -    96895 ATTCAATTAATTACCACACCCACAATGGCAGAACTCTTGTTTATCAATTAGAAGATACATCATATTACGGAATTTCGCT------ATCAGCGATTCCTTGTGAAACAGAATCCGTTACCACTGAAACGTTTTTTGCCGAACAACACGTACTACCTCAGGCTGAAACGTGCAAAGT
i caeJap4.Scaffold14268 C 0 I 279

a score=-5252.000000
s ce10.chrX              2019635 40 + 17718866 GTTACCTCT------------CACTCACTGCTTTCATCT--TGTAAAACGTTCG-------
s cb4.chrX              16875095 61 - 21540570 catACCTCCGATATTTCCCCCGAAACTATTTCATCAACTACCATCCAATATTGAAGGTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1322323  9 +  1794024 CATCCCTCC----------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     10644 38 -   484378 CATCTCGCC------------CAAACAATGTCATCAG----CATCAATCAGTCG-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500066 42 +  4147112 catCCCTCC------------GAAATTGTGTCATCAGCTTCCGTCAACCATTCG-------
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold14268    62348 279 -    96895 I

a score=-7659.000000
s ce10.chrX              2019675 59 + 17718866 TCAATTCAATTTTTTGAGCATTTTTTAAAATAATTGTTTCTAGAGCCATCGGACAACGT
s cb4.chrX              16875156 47 - 21540570 GCAATGATAAGTGTTGATAATTAGTTGC---------TTCT---TCTTTCAGAGCGCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1322332  8 +  1794024 -----------------CAGTTTGT----------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     10682 56 -   484378 TGGAAGGTAGTTCACGATAACTCgcttcaaattcatttttt---tcattcagaaagtAT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        500108 45 +  4147112 I
e caeJap4.Scaffold14268    62348 279 -    96895 I

a score=1451.000000
s ce10.chrX              2019734 17 + 17718866 GAGCCCA-TCAAAATTAC
s cb4.chrX              16875203 10 - 21540570 --------GAAAAATTGC
i cb4.chrX              C 0 I 58
s caeSp111.Scaffold582     10738 10 -   484378 --------GAACAATCAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500153 18 +  4147112 GAGCCTATGGGAAATTGC
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I
e caeRem4.Crem_Contig15  1322340  0 +  1794024 C

a score=-9033.000000
s ce10.chrX              2019751 91 + 17718866 GCAATAAGATGTGTGATGCTCATCTGGGAAGCTCAAAAACATTTTCCACAAGTG-AGTTAAAATATACATTGCTGGTGATAAAGATAT-----GCAC--
s caeRem4.Crem_Contig15  1322340 54 +  1794024 ------------GTCAT-C-----------------AGATGCCTGCTACCATAGAAGGTA---------------ACTGCAGATAAGTGATAATTATAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     10748 45 -   484378 ---------------ATGC-----------------AATCGTTTTCTGAAGTCGTAGATA---------------CTaacaaagaaat-----tcaa--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500171 57 +  4147112 ---------------GTAC-----------------ATCCATCTTCTAAAGTTGGGAACAACGTGT---TTCCTTACAGCAAAGAAAT-----CCAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I
e cb4.chrX              16875213 58 - 21540570 I

a score=-24163.000000
s ce10.chrX              2019842 110 + 17718866 AAAAGCTCTTGCAAGAATGTGCTGTGAAGTTGCATGCCTTTAT------GACCAGC-ACTAATTGTAAAACAATTTTGTAAACCAAAATAAAAACATTCAAAAAACAACTAAAT--ACT------
s cb4.chrX              16875271  66 - 21540570 AAAAG-----TTTACAACGC------------CTTGTGATGGT------GAGTCATCAATTatg--------aattta--------------------caaaaaaccaTTCAAT--TTA------
i cb4.chrX              I 58 I 7
s caeRem4.Crem_Contig15  1322394  94 +  1794024 AAATGCT-GTTTCAGAACGTA-TGCAAAATTGCTTGCACTCTTCTTCAGAAGCTATCAGTAGCT--------ACTTTACGGA-------------TTCCAAAGAACTTCTGAAT--AGT------
i caeRem4.Crem_Contig15 C 0 I 32
s caeSp111.Scaffold582     10793  75 -   484378 ------------aatagttC----AGAGATGACATTCATTGGT------AAGCAGT-AGTTACC--------ATTTCAC----------------AATCAGAATAATATTCAGA--TAAT-TCCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500228  87 +  4147112 ------------GAGACCGC----AACAATGGCTTTCAATGGT------AAGTTGT-ATATAAT--------AAATTGCGGA-------AAttctaatcaaaattttattcagagCCAATCTCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I

a score=-5979.000000
s ce10.chrX              2019952 23 + 17718866 CAAATTTTCTAGATCAAGAATGT---------
s cb4.chrX              16875344 16 - 21540570 ---------CAAATTTAGATACTGc-------
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold582     10868 15 -   484378 ------------CTCAATATCCatcat-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500315 20 +  4147112 ------------AACGCTATCTTTCAGAGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I
e caeRem4.Crem_Contig15  1322488 32 +  1794024 I

a score=-19107.000000
s ce10.chrX              2019975 52 + 17718866 CTACAGTTGTCTCAACCTCCAGATGATC-------------------AAAACAACTTCCACATTATCGACC-----------
s cb4.chrX              16875360 46 - 21540570 ---------cttcgttc----aaaattc----------aagcttcaaaatgcCAGAAAGACAGTACCAC-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1322520 65 +  1794024 TCACAAGTATTTCAATC----AATGTTCTTCTCAGATTATGTTTCTCAA--CCCATTGcacattctcaatt-----------
i caeRem4.Crem_Contig15 I 32 I 52
s caeSp111.Scaffold582     10883 24 -   484378 ----------------------------------------------------caattgaaaaaggacAATCGGACT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500335 31 +  4147112 ---------------------------------------------------ACaattgaaaaagagcaaatggATTATGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I

a score=-1527.000000
s ce10.chrX              2020027 27 + 17718866 AACATTTGTGTTTTGCCTGTGTCGACG
s cb4.chrX              16875406 10 - 21540570 AACTCTT-----------------ATA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     10907  3 -   484378 ------------------------ATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500366  3 +  4147112 ------------------------ATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62348 279 -    96895 I
e caeRem4.Crem_Contig15  1322585 52 +  1794024 I

a score=-721.000000
s ce10.chrX              2020054 23 + 17718866 ACTTTTCAGAAGAGCATGTTGGA------
s cb4.chrX              16875416 17 - 21540570 ATTTCTCTGATGA------CGAT------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     10910 17 -   484378 ATTTCTACAACTA------TGAA------
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0        500369 17 +  4147112 ATTTTTACAATTA------TGAA------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold14268    62627 23 -    96895 ATTTTACGGAGGA------CGTTTCCGGC
i caeJap4.Scaffold14268 I 279 C 0
e caeRem4.Crem_Contig15  1322585 52 +  1794024 I

a score=76152.000000
s ce10.chrX              2020077 164 + 17718866 TTTGAAGACGCTGAAAGTCTGAGTGACGTGGTAGATGAAGATTTTGCAGTAATGGAAGAATTCGCGAGCGTTTTGGAGGAGACGGGATCGGTTTTTGAAGAGTTGGGTGATGATGATTCA---ATTGAAGACAATTGTTCCATATCCGATGATAAAGTGAACAGGAT
s cb4.chrX              16875433 164 - 21540570 TTTGAGgactctgaaagtttgaattttggggTGGATGAATCGTTTGCAGTGTCAGAGGAGTTTGCAAAAGTCTTAGAAGAGACAGATTCAGTTTTCGAAGAGCTTGGTGGTGACGACGAA---TTCGAAGATCGCTGGTCGATATCAGATGACAAGGTGAAGAGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1322637 161 +  1794024 TTCAAAGacgttgaaaatttgagtgagGGGATTGACGATTCGTTTGCAGTGTTTGAAGAGTTTGCTAATGTTTTGGAAGAGActgattcagtttttgaggAACTAGTTAATGAGAGT------TTTGATGATACTTATACGATATCAGATGACAAAGTTAGACGCAT
i caeRem4.Crem_Contig15 I 52 C 0
s caeSp111.Scaffold582     10933 161 -   484378 TTTGAAGACGGTGATAATTTGAGTGAAGAAGTTCAAGAGAACATTGCTTTACACGAGGACTTCGAGAAGGTTTTGGAAGAGACGGACTCcgttttcgaagaattgaATGATGATAGT------GTTGATATGAAGTGTTCGATATCAGATGACAAAGTCCGTCGAAT
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0        500392 161 +  4147112 TTCAAAGAACCTGGCAACTTGATTGATGGCGTTGATGAAACTTTTGCAGTGAATGAAGAGTTTGCTAATGTTCTAGAAGAAACCGATTCAGTGTTTGAGGAACAGAATGATGACACT------ATTGAAGACACCTGCACAATAACCGATGATAAAGTTCACAGGAT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold14268    62650 167 -    96895 TACGGAGATTCGGAAGGCTTTGACGAAAATGTTGATGAAAATTTTGCCGTGTTGGAAGATTTTGCTGCGGTGCTAGAAGAATCGGAATCAGTTTTTGAGGAAGTAGATGACGACTCGGAATATTTTGATTACAACATTGACACGTCCGAGGAAGTTATGAACAGAGT
i caeJap4.Scaffold14268 C 0 I 5074

a score=3595.000000
s ce10.chrX              2020241 21 + 17718866 TGTGGGAATTGTGAAGAGACA---------------
s cb4.chrX              16875597 21 - 21540570 TGTGGGGATTGTAAAACGGCA---------------
i cb4.chrX              C 0 I 301
s caeRem4.Crem_Contig15  1322798 21 +  1794024 TGTGGAAATTGTGAAACGCCA---------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     11094 31 -   484378 AGTTGGAATTGTTAACCGTCATG-----GGGAGCGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500553 36 +  4147112 TGTAGGAATTGTCACTAGACATACAGATACGAGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I

a score=-11190.000000
s ce10.chrX              2020262 80 + 17718866 AATTG------------AATTTT--CAAAA-GACAGACACAGTAGATCTGAAGAAAGAAATGTTTGTCATCTCCAGGATCAAACAATTTCTGAAC
s caeRem4.Crem_Contig15  1322819 52 +  1794024 ---------------------CG--GTGAA-TATACAGCAGCTGATACTGGGAACG--------------ACATGGAAC-----AATTTCCCGAC
i caeRem4.Crem_Contig15 C 0 I 15
s caeSp111.Scaffold582     11125 83 -   484378 AATAACTCAAGC-----TGTTCT--GAGCA-GATGGATTTGATAGATCCAGAAGTAGACTTCAAT----TCTATAACGCTGACTGATTTATTGTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500589 80 +  4147112 TATAAGTCCGACCCTCTTGTCCTTGGAGAATGATGATGCTGGCGAAACTAGTAGCAGAACTC--------CTACAGGAC-------ATTCCTACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I

a score=347.000000
s ce10.chrX              2020342 14 + 17718866 AACCACATTTTCAT
s caeSp111.Scaffold582     11208 14 -   484378 ACACGGAGTTTCAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        500669 14 +  4147112 CCACAGAACATCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeRem4.Crem_Contig15  1322871 15 +  1794024 I

a score=-14279.000000
s ce10.chrX              2020356  97 + 17718866 -----------------------TCAGCTGTG--CTTGAAAAATCAGATGAAAACATTTCCTGGGTGCAGCTGCCCACATTTCAACT---TCCATCACTATTTTC-------------------AAAACAGCCTATTCTCCCAC---
s caeRem4.Crem_Contig15  1322886  98 +  1794024 TCA--------------GCTACACCAGTTGAAACGTTCAGTGCGA----------------------------GCAGAGCTCCAACTCCAAccattcatttttccgaaCATCTTCAGCCGGAGGGAACAAG-------TTCCACAAT
i caeRem4.Crem_Contig15 I 15 C 0
s caeSp111.Scaffold582     11222  87 -   484378 -CA----------------------AATTATGAAGTTGACGACTATGACAAAGAGATGATTTAca---acttttctgattttctact---accatcaattttc-----------------------aataa-------tctcACAC-
i caeSp111.Scaffold582  C 0 I 121
s caePb3.Scfld02_0        500683 110 +  4147112 -TATCCGGAAAGTTCTTCCTATGACAGTTTTGTACTTGACAATGATGAACATGAGTTTCCTATGA---AA---GCTGATTTCCAGCT---ACCATCCATTTTCTC-------------------GAATCGA-------TCCAAAAC-
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I

a score=579.000000
s ce10.chrX              2020453 14 + 17718866 CAAATGTGAAAATG
s caeRem4.Crem_Contig15  1322984 14 +  1794024 TAACTGTGAGGATT
i caeRem4.Crem_Contig15 C 0 I 88
s caePb3.Scfld02_0        500798 13 +  4147112 -CAGTGGAAAACTT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeSp111.Scaffold582     11309 121 -   484378 I

a score=-624.000000
s ce10.chrX              2020467 53 + 17718866 GAATCGGAA-------AAACAAGAAGACGAGGCTAATT------TTGATTATTCTTTACAATCAGT
s caePb3.Scfld02_0        500811 59 +  4147112 AAGGCGGAACGATTCCGAACACTTTGAGCAGGCCACTCCGTCAATTGAT--TTCATTCCAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeSp111.Scaffold582     11309 121 -   484378 I
e caeRem4.Crem_Contig15  1322998 88 +  1794024 I

a score=-2236.000000
s ce10.chrX              2020520 38 + 17718866 ACCAGAACCGTCCAGTGCTTAT------CTTCCTCATGAAACTG----------
s caeRem4.Crem_Contig15  1323086 53 +  1794024 ACCAAGAACTTCC-GTCGATCTTACCAATTTCTCGGAaaataaacacatttttg
i caeRem4.Crem_Contig15 I 88 C 0
s caePb3.Scfld02_0        500870 30 +  4147112 --CAAATGcgtct------tct------tctcttgatGAAACAA----------
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeSp111.Scaffold582     11309 121 -   484378 I

a score=127.000000
s ce10.chrX              2020558 39 + 17718866 ATCAAAATCAAAGTAGTACTTCTTTCCCGCAACAAGAAT
s caeRem4.Crem_Contig15  1323139 39 +  1794024 CTCAGAATTCGAGCCAGCCTTTTTTGGATTCCAAAGAAC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        500900 15 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeSp111.Scaffold582     11309 121 -   484378 I

a score=-835.000000
s ce10.chrX              2020597 25 + 17718866 CTGACAATGAAGA--------TTCTGAGACAAG
s caeRem4.Crem_Contig15  1323178 31 +  1794024 CCGATAAAGCAGACGCCAC--TTCTGAGAACAC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        500915 28 +  4147112 CTGA-----CAGTCCTCAAAGTGATGAATCCAC
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I
e caeSp111.Scaffold582     11309 121 -   484378 I

a score=-809.000000
s ce10.chrX              2020622 22 + 17718866 TTCTC------CTGACACACCTGAAAA-C
s caeRem4.Crem_Contig15  1323209 25 +  1794024 TTCTACCAACCTCGAATCA---GGAAAC-
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582     11430 21 -   484378 ---TC---AACCTGAAacgtctgaaaa--
i caeSp111.Scaffold582  I 121 C 0
s caePb3.Scfld02_0        500943 27 +  4147112 TTCTCAAGAACCCGAAACACGTGAAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16875618 301 - 21540570 I

a score=42671.000000
s ce10.chrX              2020644 105 + 17718866 GGCAGTGTACTTGTGAATATGATTCAAGATTACGTTCAAATGGTAATGTCCGTGTCTCGAGAATTTCAACAGTCACACAGAGAAGAAGCCTCACAAGGTAATAAA
s cb4.chrX              16875919  99 - 21540570 GGAAGTGTACTTGTCAACATGATTGAGGATTATGTCAAAATGGTGATGGACGTCTCAAAGGCACTAGGAAATCCCAG------TGAAGCCCCTGAAGGTATTAAA
i cb4.chrX              I 301 I 259
s caeRem4.Crem_Contig15  1323240 105 +  1794024 AATAGCGTTTTGGTGAATATGATTGAAGATTATGTGAAGATGGTGATGGATGCGTCAAAACAATTGAATCAGTGCAGCAGAAATGAAACCTCTCAAGGTATTAAA
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582     11451 103 -   484378 --taatatgtTGGTGAATATGATTGAggattatttgaaaatggtcAGAGAAGCGTCACTGGAATTAGATCAGTCCGTTGGAAGAGAAACCTCTCAAGGTATTAAA
i caeSp111.Scaffold582  C 0 I 311
s caePb3.Scfld02_0        500970 103 +  4147112 --CAGTGTTCTGGTAAATATGATTGAAGATTATGTCAAAATGGTTATGGAGGCGTCACGAGAACTAAACCACTCCACTAACGGAGAAACCCCTCAAGGCATTAAA
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold14268    62817 5074 -    96895 I

a score=1612.000000
s ce10.chrX              2020749 32 + 17718866 -TGTCTTGcacgtggtgtcagattgcctctttt
s caeRem4.Crem_Contig15  1323345 32 +  1794024 AAGTctagttttt-gtgtttcatttcttttttt
i caeRem4.Crem_Contig15 C 0 I 6408
s caePb3.Scfld02_0        501075 31 +  4147112 -TGTCTATCTTAT-GTGTAcatattcctctttt
i caePb3.Scfld02_0      I 2 I 6107
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16876018 259 - 21540570 I
e caeSp111.Scaffold582     11554 311 -   484378 I

a score=0.000000
s ce10.chrX              2020781 371 + 17718866 cggcctgatctatgtagatctacaaaaaaatgcgggagaacagacgcagattgctcaactgacgtcacatttttcgggcaaaaaatactcccgcaattttttgtagatcagcccgtaatggaagactctgacaccacatgGTCTGGCTTATAACCATTTTTTATAATATGAGCGGTGCAATAAGTCCTGGGTCAAAATTCATAAATGTTTGGTAATTTGTTTTTTAAAGCGAAAACTTCCGAGCTCGTCAGTCTGGATCTACAGTTGCTGACATATGCTTCGAAAGCTGACCAGATAGAAGAAGGTTTGAAAAACAATTTTTTGAAATAAAATAATATAAGTTCTAGATCCTCGACTGATGCTGAGAAGAT
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16876018 259 - 21540570 I
e caeSp111.Scaffold582     11554 311 -   484378 I
e caeRem4.Crem_Contig15  1323377 6408 +  1794024 I

a score=191.000000
s ce10.chrX              2021152 2 + 17718866 TG
s caeSp111.Scaffold582     11865 2 -   484378 TG
i caeSp111.Scaffold582  I 311 C 0
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16876018 259 - 21540570 I
e caeRem4.Crem_Contig15  1323377 6408 +  1794024 I

a score=7821.000000
s ce10.chrX              2021154 54 + 17718866 GCTCCACGAAAAACGTCAGTTGATAAATGGAAAAGTTCTACTTTGTTGAATGAA
s cb4.chrX              16876277 54 - 21540570 GCACCAAGAAAATCATCAGTGGAAAAATGGGAGAGTGCTACTTTGAAAAAGGAA
i cb4.chrX              I 259 I 5878
s caeSp111.Scaffold582     11867 54 -   484378 GCTCCACGAAAATCATCAGTAGAGGAATGGAAAAGCATTACACTCCGAAACGAA
i caeSp111.Scaffold582  C 0 I 4300
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e caeRem4.Crem_Contig15  1323377 6408 +  1794024 I

a score=0.000000
s ce10.chrX              2021208 3393 + 17718866  
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16876331 5878 - 21540570 I
e caeSp111.Scaffold582     11921 4300 -   484378 I
e caeRem4.Crem_Contig15  1323377 6408 +  1794024 I

a score=191.000000
s ce10.chrX              2024601 2 + 17718866 GA
s caeRem4.Crem_Contig15  1329785 2 +  1794024 GA
i caeRem4.Crem_Contig15 I 6408 C 0
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16876331 5878 - 21540570 I
e caeSp111.Scaffold582     11921 4300 -   484378 I

a score=13830.000000
s ce10.chrX              2024603 133 + 17718866 TTTGACACCCGAATCCAGCGATTCTAGCATTTGTGCAGAAGTAT------TCGTTCCGACAAACT------CAACACCACCTTCGGAGACTTCCCCTACCGACATTAGTTTGAACTCTTCGGAACAGCAGAACACTTCTTCGGTA
s cb4.chrX              16882209 130 - 21540570 TCTGGTTCCCGAATCCAGCGATTGCAGCTTATGTACGGATATATACGATCCTGTTCCGACAAACG------TGAATTTCTCAACGGACACTTCT---------TCCAGTTTGAATCCTTCGGAACATCCACCGACTTCTTCggta
i cb4.chrX              I 5878 I 459
s caeRem4.Crem_Contig15  1329787 145 +  1794024 TGCGGCTGCTGAGGCCAGCGACTTTAGCCTGTGCGCAGATATGTGTGACACTGTTCCGACAAACTcttctctgaaactttttaCCGAGAGTTCTTCAACCGAATCTAGTTTGAAATCTTTGGAACAGCCTTCAACTTCTTCGGTA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e caeSp111.Scaffold582     11921 4300 -   484378 I

a score=37.000000
s ce10.chrX              2024736 4 + 17718866 CGTA
s caeRem4.Crem_Contig15  1329932 4 +  1794024 AATA
i caeRem4.Crem_Contig15 C 0 I 34
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16882339 459 - 21540570 I
e caeSp111.Scaffold582     11921 4300 -   484378 I

a score=0.000000
s ce10.chrX              2024740 262 + 17718866 AGTTCCAAAGCCATGAGACAGTAGGGGCCAAAATTCTATTCGTTTTTGGTTTTAAGGTTTTTTCTTCTTTTGTTCAAATTCTATAAGAGCTGAAATTTGAGGCTTATGTTCAATTTTTGTACAACTTTTCCCGGTCACCGTGTAAACTGTATGTAGATTACCAGTTAAGTGATTCGGACGTAATCACAAATATATGTAGTCCAAGTAATTAGCACCATTTTGTTAGCAAACGTATTTTGCGAACTATTATAGTAGTTACACA
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16882339 459 - 21540570 I
e caeSp111.Scaffold582     11921 4300 -   484378 I
e caeRem4.Crem_Contig15  1329936  34 +  1794024 I

a score=214.000000
s ce10.chrX              2025002 77 + 17718866 TATTTTAACAGCTCAAGCAAAACCGATAGCGAAGAGATTATTCGATGGTCGGCAATGTACTATGTATATTAATTTAA
s caeSp111.Scaffold582     16221 69 -   484378 TAGTTTGAAATCTTTGGAACAACCGTCAAC-------TTCTTTGGTAGTTg-taattttcagtcaatCATCAATTAT
i caeSp111.Scaffold582  I 4300 C 0
e caePb3.Scfld02_0        501106 6107 +  4147112 I
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16882339 459 - 21540570 I
e caeRem4.Crem_Contig15  1329936 34 +  1794024 I

a score=-237.000000
s ce10.chrX              2025079 2 + 17718866 ----TG
s caeSp111.Scaffold582     16290 2 -   484378 ----TC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        507213 6 +  4147112 tgattt
i caePb3.Scfld02_0      I 6107 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16882339 459 - 21540570 I
e caeRem4.Crem_Contig15  1329936 34 +  1794024 I

a score=-2609.000000
s ce10.chrX              2025081 1 + 17718866 --A
s caeRem4.Crem_Contig15  1329970 1 +  1794024 -A-
i caeRem4.Crem_Contig15 I 34 C 0
s caeSp111.Scaffold582     16292 1 -   484378 T--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        507219 1 +  4147112 t--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I
e cb4.chrX              16882339 459 - 21540570 I

a score=1000.000000
s ce10.chrX              2025082 2 + 17718866 TT
s cb4.chrX              16882798 2 - 21540570 tt
i cb4.chrX              I 459 C 0
s caeRem4.Crem_Contig15  1329971 2 +  1794024 TT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     16293 2 -   484378 TT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        507220 2 +  4147112 gt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    62817 5074 -    96895 I

a score=73495.000000
s ce10.chrX              2025084 181 + 17718866 TTATAGGTATTAGAAGAAGTCTCATATTTCTTCACAACCGCGTGTGTTGCTGCACTTGCATTCATGTCCCCGGCAG-AAAAGTATAGTCttt-------------ttttcaaatatt------------------------------------------ttttattaattta--------------ataatttCAG------------C---GATTCATTATTAAATTCGGAAATCATTGAAAATGCATCAAAATATATATCCAAC
s cb4.chrX              16882800 209 - 21540570 ttccaggttctGGAAGAAGTCTCCCATTTCCTTGCTACGGCTTGTGTCGCTGCGTTAGTATTCGTATCACCGACAG-AAAGGTATAAATTTTTATTACTAGACATTATTTGAgtaaaatgcttt-----------------------------------ttttttcaatttccggtt---------ttttttccag------------ctctGATTCTACTTTCAATAGTGACATCATCGAGGACGCTTCCAAATACATTAACAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1329973 233 +  1794024 TTCCAGGTTTTGGAAGAAGTCTCTCATTTCTTTGCAACGGCTTGTGTAGCCGCACTAGCTTACATGTCCCCGTCAG-AAAGGTATAAATCATTGTAGTTTTACATTTTCGAAGTGTACAactataaatctgaaaaacaa--------------------attttccaatttccgtttctacattcacttttttcag------------ctctACTTCTCTTTTCAATAGTGACATCATTGAGGATGCTTCAAAATACATTTCGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     16295 193 -   484378 ATTTAGGTATTGAAAGAagtctctcattttctctcaacaGCTTGTGTAGCTGCgatgattttcatttctccatcag-aaaagtatatttttctatatttcaaA--CATATGA------------------------------------------------TTGTTCAATGTCCGCT----------CTTCTTTCAG------------CGCAAGTCCCTCTTTCAACCCTGACATCATCGAAGATGCATCCAAATACTTCTCAAAT
i caeSp111.Scaffold582  C 0 I 34
s caePb3.Scfld02_0        507222 226 +  4147112 tttcaggtatTGGAAGAAGTCTCCCACTTTTTGACTACTGCTTGCGTAGTTGCATTAGCATTCATGTCCCCGTCAG-AAAGgtataaatttttgtttgtcagATTTTTATGA-TACA----TTTTCATCCAGATActaaacaacattttttccaatttttttttccaatttccg-------------ttttttcag------------cACAAGTTCTACTTTCAATCCTGACATCATCGAGGATGTATCAAAATAC---------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold14268    67891 210 -    96895 TTCCAGGTAGTGGAAGAAGTCTCATATTTTCTCACAACAGTTTGTGTCGCAGCATGTGCAATGGGATCATCATCATCAGAAATGTGGGTATTtggaaattgttgtttttcaaattgc------------------------------------------cttttttattttt--------------tgactttCAGAGGCAGCAACTTCTCGAGCTCTACCTTTAATTGCGACGTTATCGAAGATGCATCAAAGTATATTTTCAGT
i caeJap4.Scaffold14268 I 5074 C 0

a score=-15973.000000
s ce10.chrX              2025265 43 + 17718866 T--CTCCGGAAGCAAA------TGAAAAATGAGACAATT--AAAAACCCTAGA-------------------
s cb4.chrX              16883009 25 - 21540570 AACAACTCAAAGCCAA------CTTC----------------CTAAT-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1330206 37 +  1794024 G--AACTGGAATCTAG------CAACAAGGGCAGTGGAA--AATAAT-------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        507454 37 +  4147112 G--AAGAGGATGCCAA------TGATGCTGACAAGAATT--GATCAT-------------------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold14268    68101 64 -    96895 --AATCTGAATTCTGATCGTGGCAACGAAAACAACAACTCCGACAAT------GCTAACAGATAAATTctcg
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     16488 34 -   484378 I

a score=86458.000000
s ce10.chrX              2025308 371 + 17718866 TATTCATTGATTTTTTGATAAA-----TAAAATTTCCCATTCTATTTTT----G------GAATAAACA-TTTAAACTTCTC---ACT-TTTGT-TTGAT---TTTTCAGTGGTGTATTTTCCA-------AGCGTCTGTAAAT-----GTGAATCACCTATTTTATTATCAATTTACCACCCACATCTCAATGAAGTGT-TTAAA-CAGTGCCTAAACTGTCTTCCCAAGTTTCGAACC-----TTATCA---ATTTTCTC--TTTCTGAGTCTCGCAA-ATTTTCATTTCACCC-AGTACT-TTAAGGCGATCGCTTACATTTTGTGTGGCACCGA-TCTGTTATCAGTTTT-TATG---TGTGCCTGTGTGCGTG------TGTGT----TGTG----------CATGAAGAGTCGT----TTATGACT---TTTCTAA--CCAACTT-GATTT
s cb4.chrX              16883034 380 - 21540570 --AACCCCTAGtttttt--------------tGATACAGTGTAAATT-------------GAATAAATC-ATCTAACTTCTCGATATT-CTTAAAATAAT------TATTTGGGTTTCTCTCCAG------GGT-TGTGTTT-T-----GTGAATCACCCATTTCATTATCATTTTACCACCCACATCTGGAGGTTGTATGTTAGCAAAGTG-TGAAGCACTCTTTCCAAG-TTTCCAAC-----TTATCAGCTAGCGTTTCGATGTCTGCGtctgattt-ttcaacattcc--TA-ATCGTT-TTAAGGAAATCGCTCGC--TTACGGGCACCACG--CTCGTTATCAGTTTTGTATCAGTTTTCTCGGGGCGAGTG-------GTGCTAGCCGCGACACACACACTCCG-TGAGTCTTATTATTATGGACATTTTTCTTA--CCAACTT-GATAT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15  1330243 376 +  1794024 --Tactccaattttt-------------------taaaatgttaatttt----ACGTCCCAAATAAATCTATCTAACTTCTC---ATT-CTCAAAATAAC-ATCAGTTCATGGGCTACTTCCCA-------GGT-TGTGTGCAT-----GTGAATCACCCATTTCATTATCATTTTACCACCCACATCTGTAGGCTGTA--TTAGC-GAGTG-TGAAGCACTCTTTCCAAGTTTTCCAAC-----TTATCAG-TATTGTTTC--CTTCTGCGTCTCCCTC-TATTTTATTACAGCA-AACGTT-TTAAGGCGATCGCTCACATTTTCTGCCGCACCA--ACCGTTATCAGTTTT-TGTC---TTTCTCTGTGAGAGTGTATGTGTGTGCTCG-CGTG----------TATG-TGAGTCTTATTATTATGGTC--TTTTCTAA--CCAACTT-Gagtt
i caeRem4.Crem_Contig15 C 0 I 646
s caeSp111.Scaffold582     16522 385 -   484378 Tatgttttgattctttta-ATA-----TCTATTATCAATTCTCACTTTT----ATTT---AAATAAACCCATTTAAccactt---att-tttcttttgat-agGTGACATTGGGCTACTTCCCA-------GGC-TGTGTGCAT-----GTGAATCACCAATTTCATTATCATTTTGCCACCCACATCTGAAGAGTGTA--TTAGC-GAGTT-TGAAGCCCTCtttccaagtttttcaaC-----TTATCA---GTCAATTC--ATTCTGcgtcttctcaattttcaactcTAGTC-ATTGTT-TTAAGGCGATCGCTCACATTTTGTGAGACACCACTTTCGTTATCAGTTCT-TGCC-----TTTCAGTGCCAgtg------tgtgcggg-tgtg-----tgta-tgtg-tgtgtcTTATTATTATGGCC---TTTCTCA--CCAACTTGGGTTT
i caeSp111.Scaffold582  I 34 C 0
s caePb3.Scfld02_0        507491 371 +  4147112 TATgctttgattctttt--------------ttttcagtttctactTTTTGACGCTT---GAATAAACTCTCATaacttctc---attatttttgttgaa-aggtCTTATTGGGCTACTTCCCA-------GGT-TGTATGCTT-----GTGAATCACCAATTTCATTATCATTTTACCACCCACATCTGAAGAGTGTA--TTAGC-GAGTG-TGAAGCACTCTTTTCAAGTTTCTAAAC-----TTATCAG-TGTCATTTC--ACTCTGCGTC-------TTGTAGGCTCTCGTCAAATGTT-TTAAGACGATCGCTCACATTTTGTGGGGCACCA--TCCGTTATCAGTTTT-TGTC-----TTTCGGTGCCAGTG------TGTGCGCG-CGTG----------TTTG-TGTGTCTTATTATTATGGTC---TTTCTCC--ACAACTT-GGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    68165 373 -    96895 tttttatttattttttctcaaatttgctttgctgctagttttcaaattt----ttttaatacataAATAATTCTTACTTCTC--TAtt-tatttgttgaaaaaaaaaccaaatgtcAATTTCCAGAGTTTAAGC-TGTTTCCCTTTCAAATGAATCATTCATTT-ATTATCATTCTACCACCCACAC--------------TCCAA-AAGCA-T-AAGGGCTCTTTTAAAATGTTCCGGCCGGCTTTATCAGTTGATATGTC--TGTCGTCGTC-------------AATGCAGCC-AATAATATTAAGACGATCGCTCACATATGCAG--GCACTA--TCCGTTATCAG-----TGTC----------AAGAGAGT-------TGTATGAG-CGTG----------TGTG-CATGCTGTATTATTATGGCC---TTCCTCGCTCCAACTT-AGTTT
i caeJap4.Scaffold14268 C 0 I 1589

a score=2418.000000
s ce10.chrX              2025679 5 + 17718866 AGTCT
s cb4.chrX              16883416 5 - 21540570 agttt
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold582     16907 5 -   484378 AGTTT
i caeSp111.Scaffold582  C 0 I 148
s caePb3.Scfld02_0        507862 5 +  4147112 AGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=-1227.000000
s ce10.chrX              2025684 43 + 17718866 TCAATCGCTCTTCTCACT--ATTTTTACAGGAATACTGTTTATTT-------
s cb4.chrX              16883421 44 - 21540570 tttctttttcttcttatga-ATTATAAAATGAATATATTCTATTT-------
i cb4.chrX              C 0 I 1696
s caePb3.Scfld02_0        507867 47 +  4147112 -----CTCAACTCTCACGATACAATTTTATAAGCGCACTCTACTGTTTTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e caeSp111.Scaffold582     16912 148 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=182.000000
s ce10.chrX              2025727 2 + 17718866 AT
s caePb3.Scfld02_0        507914 2 +  4147112 AT
i caePb3.Scfld02_0      C 0 I 60
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     16912 148 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=0.000000
s ce10.chrX              2025729 884 + 17718866  
e caePb3.Scfld02_0        507916  60 +  4147112 I
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     16912 148 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=712.000000
s ce10.chrX              2026613 14 + 17718866 TTTTTACTCTTAAC
s caePb3.Scfld02_0        507976 14 +  4147112 tttttcttcctaat
i caePb3.Scfld02_0      I 60 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     16912 148 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=21010.000000
s ce10.chrX              2026627 360 + 17718866 -----------ATTTACAGA-AAAAGGCATAATGGCCAACCAAGATCAAAACTATTTAGGACCACGGACTCATCCTCCAAATCTTCAAAAATCTACATCATGTGAGT----------TTATGACATATGTATAAATACAATTTAAAATGTATAAATTTTCAGTTTCTGGTGCAAAATTGCACTATCAGTACACTGGAAAAGAACAAAAAACGAGCAG---TTCCAA---AGATGAATCCCGTGTA-----CATCATTCTGAAAATAGAAGTCCACATTTGTCAAGGCAATTAACAGTTGATTATGGTGGTGGCTCAACAGTGGATCAACGATCGCAGCTGGGAACTCAAGCTACTTTCTCACCTGGAAGTTCAAGAAAGACTAATTTCAATCC
s caeSp111.Scaffold582     17060 343 -   484378 -----------ATTTGcagataaaaataaaaatggtcGATCGAGACGTCCGATATTCACGCTCTCCAACTCGAAATCCGAGTATTCAAAGATCCACTTCCTGTGAGT----------TTCTGTTCGAGTCAATAATCCtgttattattgtttttcatttcagttgGTGGCGCTAAGCTACATTTCAGTTACACCGGGAATGAAACTAAAACCAG------TTCTCGTGGAAACAGTTCACATTTAA----AGTTA-CCTGAAGTCAGCTCTTCTCATTTACCAAGACAATCAAGTGTTGATTA---TTCTCGCTATTCAAGCTCCCAAT---------------CTTCTGCCCCCTTCTCTccagaaattccaaaaagctCTACGTTCACTCC
i caeSp111.Scaffold582  I 148 I 648
s caePb3.Scfld02_0        507990 367 +  4147112 GTTTACgtcagttttccaga-aaaagtcATAATGGTCGATCGAGATAATTTTCGTTCAAACTCTCCAACTCGAAACCCTAATGTTCAAAGATCCACATCATGTAAGTTATAAATACATTCTatccaaatttttattcc--ttATGATTAGCGCTATTTGCAGTTGGTGGTGCAAAACTTCACTTCAAGTATACTGGTAATGAAACTAAAACGAGGAGTAATTCTCG----AACAAATC-CATCTGAATCGAGTCATCTTGAAACCAGCCATCCTCGCTTGCCCAGACAATCAACATTCGATCA---CTCTCGCACAACAAATACTCCAC---------------CTTCGGCACCTTTCTCTCCTGAAATCCCAAGAAGATCTACATTCGTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=540.000000
s ce10.chrX              2026987 11 + 17718866 TTACGATCCAG
s caePb3.Scfld02_0        508357 11 +  4147112 TTATAACCCGG
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     17403 648 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=0.000000
s ce10.chrX              2026998 610 + 17718866  
e caePb3.Scfld02_0        508368  80 +  4147112 I
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     17403 648 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=800.000000
s ce10.chrX              2027608 13 + 17718866 TATGGATTTGCAT
s caePb3.Scfld02_0        508448 13 +  4147112 TATGGAGATGCAT
i caePb3.Scfld02_0      I 80 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     17403 648 -   484378 I
e caeRem4.Crem_Contig15  1330619 646 +  1794024 I

a score=7855.000000
s ce10.chrX              2027621 201 + 17718866 -----------------CATCGTCCAAAAGACGACGTCACCTTGGCAACTTCGACTGCTTCACCAC---TCTCTTTCTCTGGGCACAGAGCACCACCTGCCGAAGTGCG--TGAAACTCTACCCATGTCTTCTCAAGTAAGCACATTTTTAAGAGGTAACGAGAGTTCTCGGCATTCATATTCAAACCCGTCCACAAAAGTAACTACGACTCCGCCAATACAA---------------------------------
s caeRem4.Crem_Contig15  1331265 216 +  1794024 -----------------CATCTCTCAAAA---GATATCACCTTGACAACTTCATCCACTCTACTtccctcctcttcttctctgcACTCCCCAACA-----CGAAATCTCATTGAAACTCCACCTCTCTCGGCTCCAACAAGTCAATATACGAGGAACTATGGGAACTCTTCATACAC---TGCATACTCCGC-----------CTACGAC-CCTACAAAAAGAGTAATTCCAGCGGATACTTCACCTCGAATACCA
i caeRem4.Crem_Contig15 I 646 C 0
s caePb3.Scfld02_0        508461 191 +  4147112 CTTCTGCTCGCATATCGCATCCCATAAAA---GACGTCACCTTGGCAACTTCATCCACTCTAGTTC---CTTCGCCCTCTCCACACATCTCAACA-----CAAAATAGAATAgaagctccgcctc------cttctTTGAGCCCGCATACAAGGATATATGGAAGTTCTCCATACTC---TGCGTACTCTTC-----------CTACGAC-Ccgccaaaaaaa---------------------------------
i caePb3.Scfld02_0      C 0 I 494
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     17403 648 -   484378 I

a score=-577.000000
s ce10.chrX              2027822 204 + 17718866 ------CAATCACATTTGGGTACAAACTATCTCACAACTGTGCAATCATCGAACTTAGACAGAAGTCCTTCACCGTCACGATCGAGATATA---------TGAACAGTCGAGATCGTCGTAAAACAACAACAATCATCCCATCTTCAATTCCACAGTCCAGTGAGTATAAATCAGCTTTCCAAAGGGAAGCCCCAGCAGTGTAC-TATACAGA-------------ACCTCAA
s caeRem4.Crem_Contig15  1331481 225 +  1794024 GCTCCGCCTCCACCTTCGATCCCTCAACATTCTAAAGCTCTTCAGCCA--GTTCCTAT-CAGAAGATCT---CCATCACCTGCGAGAAGAACTCAGCCGGTTATTGATCGTACTCGTCGTCAAACCACGGCCGTTTTTCCTTCTCAAA--CCACATTTCTGTCAGCTCAAGAATACAATCCGACAAGCAGCTCTACAAGATTGCCTGTTCAAACTACGGCCCGAACGCATTAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        508652 494 +  4147112 I
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e cb4.chrX              16883465 1696 - 21540570 I
e caeSp111.Scaffold582     17403 648 -   484378 I

a score=940.000000
s ce10.chrX              2028026 5 + 17718866 TCAAC
s cb4.chrX              16885161 5 - 21540570 TCAGC
i cb4.chrX              I 1696 C 0
s caeRem4.Crem_Contig15  1331706 5 +  1794024 CCAGC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        508652 494 +  4147112 I
e caeJap4.Scaffold14268    68538 1589 -    96895 I
e caeSp111.Scaffold582     17403 648 -   484378 I

a score=-1918.000000
s ce10.chrX              2028031 3 + 17718866 ATA-
s cb4.chrX              16885166 3 - 21540570 -ACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1331711 3 +  1794024 -TCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     18051 3 -   484378 ATC-
i caeSp111.Scaffold582  I 648 C 0
e caePb3.Scfld02_0        508652 494 +  4147112 I
e caeJap4.Scaffold14268    68538 1589 -    96895 I

a score=11626.000000
s ce10.chrX              2028034 34 + 17718866 CAAGCCTCTGCCCATGAGCTCTCAGACGCAAAAT
s cb4.chrX              16885169 28 - 21540570 CAAACCTTTGTCGCTAAACTCT------CAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1331714 34 +  1794024 GAAACCCCAGTCGTTGAATACTCAGATGCAGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     18054 34 -   484378 CAAACCACATTCTGTGGGCGCGCAGATGCAAAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        509146 34 +  4147112 CAAACCACAATCGTTGAATACTCAGATGCAAAAT
i caePb3.Scfld02_0      I 494 C 0
e caeJap4.Scaffold14268    68538 1589 -    96895 I

a score=154641.000000
s ce10.chrX              2028068 362 + 17718866 A-------------------------GGAATCTCACAATAGGATACACTCCAAATCAGTTTCAAGAAATTGAAAGAGCTCAGAGGGAATTCAAGAATCAGAAGAAAC---AGGAGGAAGAAATTCGGGCTAAACTTGAAGCCAAAAAGAAAGCAGAACAAGAGAAAGAGAGGGCAAAACGAGAAGAGCAACGAAGAATTGAAGAAGCTGCTAAACTGGAATATCGGAGAAGAATTGAAGAATCGCAGCGGCTGGAAGCAGAAAGGCTCGCATTGGAAGCAACAATGG---------------TTGATGAAGATGA---AGACGTGGCAAAGTTTATCCGCAATCTTGAAGAAAGAATCAAAGACTCACGCGATTCAAAAAACTTGAATGGCGCTCTCGTAGGGCGCCA
s cb4.chrX              16885197 395 - 21540570 C-CTCGTCTAAGATCGCAGGACAGGCGGCACATGACAATTGGTTACACGCAAAATCAATACCAGGTCATTCAAAGGGCTCAAGAAGAAATCAAAGCTGAGACAGAAAGGCAGGAAAACGAGATAAAAGCAAAATTGCAAGCAGAAAGAAGAGCCG---------AGGATCAAAAGCGCTTTGAAGAAAGACGGAGAATTCGGGAAGCTTCTGAGCTAGAAGCGAGGAAAAGAGTTGAAGAATCTGCAAGGCTGGAAGCTGAGCGACTAGCCCTGGAAGCCGTTATGAGAGCCGCACAACCGCCAGACGAAGATGC---CGACGTGGAGAAGTTCATCCAAAATCTCAACCAACGAATCCAAGACTCACgggattcaaaaaacttgCAGGGCGCTCTTGTAGGGCGCCA
i cb4.chrX              C 0 I 77
s caeRem4.Crem_Contig15  1331748 383 +  1794024 A-CTCGCTTGCCATCGCCACAGAGTAGAAACTTGACAATCGGATACTCTGAAAGTCAACGTCAAGACATTGAGAGAGCTCAAGAACAATTTCGATCTcaaataa------gggaaaaagaaatcaaagcaaagctggaagc---caaaagagctg---------aagagcaagcaagacttgaagaaagaaaacgaattgAAGAAGCTGCAAAACTGGAGGCTCGAAAAAGAGTCGAAGAATCCGCAAGGCTGGATGCTGAAAGGCTTGCATTGGAAGCCGTGATGAGGGCTGCACA---TCCCGATGAAGACGA---AGACGTAGAGAAGTTTATCCGCAATCTCGAGCAACGAATCCAAGACTCACGcgattcaaaaaacttgaagggCGCTCTCGTAGGGCGCCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     18088 392 -   484378 AGCCAGACAGGGAACTCT-CGCCGA---AACCTGACCATTGGATATTCATTAAATCAAGCTCGAGAAATCGAGAAAGCTCAAGAAATTATAAAAGCTTCGGTCaaagtagaagaagcaaaaaagagagccgagttagaagcgagaagaagaattg---------aagaagaagctagacgagctgaacaaaaaagaatagaggaagcGAtccaattggaaaaattggaaagagTGAGAGAAGCATCAAGACTGGAAGCAGAGCGTCTCGCGTTGGAAGCAGTCATGAAAGCTCATCAACCGCccgatgaagatga---agatgttAATAAATTCATCAAGAATCTCGAAGAACGAATTAGAGACTCACgggattcaaaaaacttgaacGGCGCTCTTGTAGGGCGCCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        509180 395 +  4147112 A-CTCGATTGGCATCTCCACGTAGGAATAACTTGACTATTGGGTATTCCGCTaatcaatttcaagaaattgaaaaagctaAGGAAGAATTCAAAGCCctcagaagaaaagaggaagaagcgataagagcgaaattggaagccaagaaaaaggctg---------aagaagaagcacgtctagcggaaagaaggagaatcgaagaagcGGCTAAACTGGAAGCTCGACGAAGAGTTGAAGAAACTGCTCGACTAGACGCTGAACGTCTTGCACTCGAAGCCATGATGAGAGCTGCACAACCTGTCGATGAGGACGA---AGACGTCGCAAAGTTCATACAAAACCTCGAACAACGTATCAAAGATTCAagggattcaaaaaactcgatGGGCGCTCTTGTAGGGCGCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70127 325 -    96895 -------------------------AGAACTTTGACAATTGGATATTTGCCGCAACATGGGAGAGAAATTGAAGAAGCACAGAGACTTTTAGCAG---------------TGgaaacagcga-gaaaacaaag--ggaagcagaggaaaaagcaa---------aagc---------acgtgcagagaaaaagGCCGCTGAGGTTGCCGCAAATTTGgaaaaggcgagaaaagaggaagaagcggcgaaac---aagctgaa------------aaggcaaacaaaaaag------aatCGGGTGAAGAAGACGACGGAGAAGTGGAAAGATTCATTAAGAGCCTCGAAGAACGCATCAAAGACTCGCA-GATTTCAAAAACGGGATAGGCGCTCTAGCAGGGCGCCA
i caeJap4.Scaffold14268 I 1589 C 0

a score=8292.000000
s ce10.chrX              2028430 19 + 17718866 AATCAACCAGAGCGTAGGT
s caeRem4.Crem_Contig15  1332131 19 +  1794024 ATCGAGTCAAAACGTGAGT
i caeRem4.Crem_Contig15 C 0 I 43
s caeSp111.Scaffold582     18480 19 -   484378 ACTGAATCAAAACGttagt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        509575 19 +  4147112 ACTGAATCagaacgtgagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70452 19 -    96895 AACCGGTTCGAACGTGAGT
i caeJap4.Scaffold14268 C 0 I 8
e cb4.chrX              16885592 77 - 21540570 I

a score=416.000000
s ce10.chrX              2028449 3 + 17718866 ATT
s caeSp111.Scaffold582     18499 3 -   484378 ttt
i caeSp111.Scaffold582  C 0 I 77
s caePb3.Scfld02_0        509594 3 +  4147112 ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70479 3 -    96895 Atc
i caeJap4.Scaffold14268 I 8 C 0
e cb4.chrX              16885592 77 - 21540570 I
e caeRem4.Crem_Contig15  1332150 43 +  1794024 I

a score=605.000000
s ce10.chrX              2028452 8 + 17718866 CCATTTTA
s caePb3.Scfld02_0        509597 8 +  4147112 ttttttca
i caePb3.Scfld02_0      C 0 I 87
s caeJap4.Scaffold14268    70482 8 -    96895 tcattttt
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16885592 77 - 21540570 I
e caeSp111.Scaffold582     18502 77 -   484378 I
e caeRem4.Crem_Contig15  1332150 43 +  1794024 I

a score=373.000000
s ce10.chrX              2028460 4 + 17718866 GAAA
s caeJap4.Scaffold14268    70490 4 -    96895 gaaa
i caeJap4.Scaffold14268 C 0 I 15
e caePb3.Scfld02_0        509605 87 +  4147112 I
e cb4.chrX              16885592 77 - 21540570 I
e caeSp111.Scaffold582     18502 77 -   484378 I
e caeRem4.Crem_Contig15  1332150 43 +  1794024 I

a score=0.000000
s ce10.chrX              2028464 835 + 17718866  
e caePb3.Scfld02_0        509605  87 +  4147112 I
e caeJap4.Scaffold14268    70494  15 -    96895 I
e cb4.chrX              16885592  77 - 21540570 I
e caeSp111.Scaffold582     18502  77 -   484378 I
e caeRem4.Crem_Contig15  1332150  43 +  1794024 I

a score=969.000000
s ce10.chrX              2029299 35 + 17718866 TTTCTGCCCTTCAGTAACTATTAGTTTCCCACCAA
s caeRem4.Crem_Contig15  1332193 35 +  1794024 tttttgaactgaattaGGTATTCGTTCTCAactaa
i caeRem4.Crem_Contig15 I 43 C 0
e caePb3.Scfld02_0        509605 87 +  4147112 I
e caeJap4.Scaffold14268    70494 15 -    96895 I
e cb4.chrX              16885592 77 - 21540570 I
e caeSp111.Scaffold582     18502 77 -   484378 I

a score=-688.000000
s ce10.chrX              2029334 6 + 17718866 CGTCAC
s cb4.chrX              16885669 6 - 21540570 CGCCtt
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig15  1332228 5 +  1794024 -aatca
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        509605 87 +  4147112 I
e caeJap4.Scaffold14268    70494 15 -    96895 I
e caeSp111.Scaffold582     18502 77 -   484378 I

a score=546.000000
s ce10.chrX              2029340 1 + 17718866 T
s cb4.chrX              16885675 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332233 1 +  1794024 t
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold14268    70509 1 -    96895 T
i caeJap4.Scaffold14268 I 15 C 0
e caePb3.Scfld02_0        509605 87 +  4147112 I
e caeSp111.Scaffold582     18502 77 -   484378 I

a score=1820.000000
s ce10.chrX              2029341 2 + 17718866 TT
s cb4.chrX              16885676 2 - 21540570 tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332234 2 +  1794024 tt
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        509692 2 +  4147112 TT
i caePb3.Scfld02_0      I 87 C 0
s caeJap4.Scaffold14268    70510 2 -    96895 TT
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     18502 77 -   484378 I

a score=170522.000000
s ce10.chrX              2029343 342 + 17718866 TTCAGCTTGCAAAAAATGCGGAAAATCTCACAAGTGCGCA------------GACTGATGAAGACAACGGAC---AAGTTGAAGGACACGACGGCGCTAATGATCAGGTGGGTATC-GTG----------------TCGTAAAAACGGT--CGTTTATTG-CCTTTGTAGGAGTCTATACAAAACG------TTGCCGACAGCTCGGAAGAGTACACGTTTCTTCAACGAATTGTATGT----------GTAGCTAGTTCTTTACAA--CTTACAATTTACTTATTTATTTCAGAAAAATATGAAAACCGATCAGAACGCCAATCGCAAAAAGTATGCCGAGCATTATTATGATTTTGATGAT------TATGATGACTCGGAACTTCATTCGACGGTATA-
s cb4.chrX              16885678 346 - 21540570 ttCAGCCTGCAACAAATGCGGAAAATCTCACAAATGCGct------------ga---atgaagaagaagaaaaggcaGTTGAAGGCCAC---------AATGATCAAGTAGGGGTA-ATAGTTTCTTTTCCCCACCGCGTAAATGT-CTCACATTTATTG-CCTTTGTAGATGTCTACACAAAACGCCGCCACCGCCGACAGCTCGGAGGTGCGTACGTTTCTCGATCGTTTGGTAAGT----------G--------TGTCTAGAGTATTTCTTATGAAAGCCTGATTTCCAGAAAGAAATGAAGATTGACAAGAATCAGAATCgcaaaaaatttgctgaaaaattctacGATCCAGAAG---------ACGACGATTCGGAACTCAATTCAGTGGtg-a-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332236 335 +  1794024 ttcagcttgcaaaaaatgcggaaaatcTCACAAATGCGCT------------GA---ATGAGATTGACGAAA---CAGTTGAAGGACGCGA---CGCTGACGACCAGGTGGGTATC-ATG----------------TCGTAAACGC-AC--CTTTTATTGTCTTTTGTAGACGTCTACACAAAGCG------CCGCCGACAGCTCAGAGGTGCGTACATTTCTCGACCGTTTGGTATGTTTCGCAGATAG--------TATTCTGAATGTTTCAC-TAGTTGTTCGAATTAcagagaaatatgaaaactgatgaaaatcagaatcgGCGAAAGTATGCCGAAACTATGTATGATCCCGAAG---------ACGACGACTCCGAACTTAATTCATTGGTA-A-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     18579 328 -   484378 TTCAGCTTGCGAAAAGTGCGGAAAGTCTCACAAATGCGCC------------GA---CTGAAGTCGACGAAA---ACGTTGAAGGACGACC---ATCTAATGATCAGGTGGGTATC-GCG----------------TCGTAAACGC-AC--CATTTATTG-CCTTTGTAGGTGTCTACGCAAAGCG------CAGCCGACAACTCGGAGTTGGCAGTGCTTTTTGAACGATTGGTATAA----------A-CTTCTTTTGTTGGT----TTTGTTAATATGTACtcaattctagaaaaatatgacTACCGATGAGAATCAAAACCGCCGAAAGTACGCCGAGAATTATTACGATCCAGAGG---------ACGACGACTCTGAATTAAATTCATTGGTA-A-
i caeSp111.Scaffold582  I 77 C 0
s caePb3.Scfld02_0        509694 333 +  4147112 TACAGCTTGCAAAAAGTGCGGAAAATCTCACAAATGCGCC------------GA---ATGAAGTCGCCGAAG---TTGTTGAAGGACGCGA---CACTAATGATCAGGTGGGTATC-GTG----------------TCGTAAACGC-AC--CATTTATTG-CCTTTGTAGGTGTCTACACAAAGCG------CGGCCGACAACTCGGAGTTTGCTGCgcttattcaaaaattggtatgc----------gtttttttttgttagcaTTGTTTGTTAATgcgtttttgattttagaataACATGACTACCGACGAAAATCAGAATCGGAGAAAATACGCCGAGAATTATTACGATCCAGAAG---------ACGACGATTCTGAACTTAACTCATTGGTA-T-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70512 356 -    96895 TTAAGCCTGCCAAAAGTGCGGAAAGTCTCACAAATGCGCTCAAGATTGACCAGA---CGGCAACCACAGATA---CGTTTGAAGGACATGA------AGATGATCAGGTAAGCATCAGTG----------------Tcgtaaa-at-tc--attttattg-cCTTTGTAGAAGACTACACAAAACG------TCGCCGACAGCTCGGAGGAGTACAAGTTTCTTGAGCGAATTGTACGT----TATAAAACCGTcgttgattttcat--tttaaaaaaactgttttatttgaagaaaaatatgaaaaccgATCACAATGCTAATCGCCGAAAGTTTGCCGAACATTATTACGATATCGAGGACAATGAAGATGATGACTCAACTCTTAATTCATCCGTA-AG
i caeJap4.Scaffold14268 C 0 I 20

a score=-2611.000000
s ce10.chrX              2029685 4 + 17718866 GTA--A
s cb4.chrX              16886024 4 - 21540570 gta--a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332571 4 +  1794024 GTA--A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     18907 3 -   484378 GTT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        510027 5 +  4147112 GTTCA-
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold14268    70868 20 -    96895 I

a score=1106.000000
s ce10.chrX              2029689 12 + 17718866 TCTTTCTATTTT
s cb4.chrX              16886028 12 - 21540570 tttttttaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332575 12 +  1794024 ACAGTTTATTTT
i caeRem4.Crem_Contig15 C 0 I 98
s caeSp111.Scaffold582     18910 12 -   484378 TTTCCCTGGTTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        510032 16 +  4147112 I
e caeJap4.Scaffold14268    70868 20 -    96895 I

a score=-594.000000
s ce10.chrX              2029701 22 + 17718866 TATATTTATTCTATTTATTGTG
s cb4.chrX              16886040 22 - 21540570 ttgaagtattttttaaattcta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     18922 10 -   484378 ------------TAGAATTgca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        510032 16 +  4147112 I
e caeJap4.Scaffold14268    70868 20 -    96895 I
e caeRem4.Crem_Contig15  1332587 98 +  1794024 I

a score=-359.000000
s ce10.chrX              2029723 5 + 17718866 ACTGA
s caeSp111.Scaffold582     18932 3 -   484378 att--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        510048 5 +  4147112 ATTGC
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold14268    70868 20 -    96895 I
e cb4.chrX              16886062 0 - 21540570 C
e caeRem4.Crem_Contig15  1332587 98 +  1794024 I

a score=-6304.000000
s ce10.chrX              2029728 21 + 17718866 CTCACTATTAGAACACTCACA
s cb4.chrX              16886062  3 - 21540570 ------gtt------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     18935 13 -   484378 -tcacttttca-------tta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        510053 21 +  4147112 ATCATTGTTAAATATCATTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70888 18 -    96895 ttcaaaaataaaacgatC---
i caeJap4.Scaffold14268 I 20 C 0
e caeRem4.Crem_Contig15  1332587 98 +  1794024 I

a score=22272.000000
s ce10.chrX              2029749 106 + 17718866 TTTTCAGACAAGCATGAATTCTCTTCTCTCTACTGTCACTGAAGAAGATCCTGATTCCACTTCACTCAATAATCATTCG--ACTTCAAC-TAATCCtaaagtaatatt-t
s cb4.chrX              16886065  95 - 21540570 -ttttagaCCAGCATGAGCTCATTTCTGTCTACAGTGCCTGAAGAGGACCCGGACACCACTTCACTTGATAATCAATTCTATCTAATTGCTGATTC--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1332685 106 +  1794024 ttttcagaacagttCAGATTCGTTCCTCTCGACTGTTCCTGAAGAAGACCCTGATGTGACCTCCCTTGATAACCAATCC--TTTACTTG-TGATCCTCAGGTAACCCTT-
i caeRem4.Crem_Contig15 I 98 I 1
s caeSp111.Scaffold582     18948  95 -   484378 -tttcaga---------attcatttctttctacagtaaccgagGAGGATCCAGATATGCTTTCTGTTAATAATCATTCA--TCCACATC-TGATCTTCAAGTTAGTTT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        510074  95 +  4147112 -TTTCAGA---------ACTCATTCCTCTCAACAGTAACAGAAGAGGATCCAGATATGCTTTCTGTTAACAACCAGCCA--TTTACAAG-CGATCctcaagtgagttt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70906  49 -    96895 TTTGCAGAATAGCATAAACTCATTTTTATCAACTGTTCCCGAAGAGGAT-------------------------------------------------------------
i caeJap4.Scaffold14268 C 0 C 0

a score=-6766.000000
s ce10.chrX              2029855 38 + 17718866 gcgcgagtggggaagtgcttaaaaattactctacataa
s cb4.chrX              16886160 24 - 21540570 ACAGGTATGGCG--------------CATTTTTtgcag
i cb4.chrX              C 0 I 29
s caeSp111.Scaffold582     19043 11 -   484378 ---------------------------ACTCTTCCTAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        510169  2 +  4147112 -----------------------------------ta-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    70955 14 -    96895 ------------------------ATTGCTTTTCTTAA
i caeJap4.Scaffold14268 C 0 C 0
e caeRem4.Crem_Contig15  1332791  1 +  1794024 I

a score=-16217.000000
s ce10.chrX              2029893 116 + 17718866 tggtgacaaaatgacagaatatcatagtaaaacttt---------------tcaaaaaaattttggaaaattttaattttctgtcataatgtgacaactacaaagtgtttCTACGATTTTTACACTTAAAT
s cb4.chrX              16886213 105 - 21540570 TAGCTACAA----CCAGAAT----TATTGAAGCTGtattaggattactgtatctatagtgtttcagttgatttcaa----------------GACAATTATACAATATT--TAAGAGTCTGGAGccctaaa
i cb4.chrX              I 29 I 71
s caePb3.Scfld02_0        510171  29 +  4147112 -----------------------------------------------------------------------tttgA----------------GATATTC---------------GAACTTGCAGTCCTAAT
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold14268    70969  52 -    96895 --------------------------------------CCAGCAAAATGTATGCACCGATCTTCAAgtgagtttga-----------------------aaaaaatatttcta------------------
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     19054   0 -   484378 C
e caeRem4.Crem_Contig15  1332791   1 +  1794024 I

a score=0.000000
s ce10.chrX              2030009 65 + 17718866 TTTTTTTTTCTGAAAATTTTCGAGTGTTTTGAGTCACTATAAGCGTAGTTAAACAAAATCCACAC
e caePb3.Scfld02_0        510200  8 +  4147112 I
e caeJap4.Scaffold14268    71021  0 -    96895 C
e cb4.chrX              16886318 71 - 21540570 I
e caeSp111.Scaffold582     19054  0 -   484378 C
e caeRem4.Crem_Contig15  1332791  1 +  1794024 I

a score=-17778.000000
s ce10.chrX              2030074 42 + 17718866 ATGCTTTTCTTCACCTTCAAACAGTGCTA-TAAATTGAAAATT----
s cb4.chrX              16886389 29 - 21540570 AT-CTGTTTTTTACCTT-------------TTCAGTACGAATA----
i cb4.chrX              I 71 I 354
s caeRem4.Crem_Contig15  1332792 19 +  1794024 AT-CTATTTCTCAT-----------------------CGAATA----
i caeRem4.Crem_Contig15 I 1 I 26
s caeSp111.Scaffold582     19054 20 -   484378 ----------ACGCTTT-------------TATAGTGTTAATT----
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0        510208  2 +  4147112 -----------------------------------------TT----
i caePb3.Scfld02_0      I 8 I 10
s caeJap4.Scaffold14268    71021 24 -    96895 -----------------------atgGTACTGTCTTGCAGATTGAAA
i caeJap4.Scaffold14268 C 0 C 0

a score=0.000000
s ce10.chrX              2030116 10 + 17718866 TCAGTTATCT
e caePb3.Scfld02_0        510210 10 +  4147112 I
e caeJap4.Scaffold14268    71045  0 -    96895 C
e cb4.chrX              16886418 354 - 21540570 I
e caeSp111.Scaffold582     19074 10 -   484378 I
e caeRem4.Crem_Contig15  1332811 26 +  1794024 I

a score=78217.000000
s ce10.chrX              2030126  98 + 17718866 ACTCTTCAGCCAAGTGTCATCTCTTTCATCCACGATCTGGTGGACGGCATCTTATCATCTTTAGATAAAACCGATATTTCAAGACCTA---CTGATACTCA
s cb4.chrX              16886772 101 - 21540570 ACGCTACAGCCACGTGTCATCTCTTACATCCACGATATGGTGGACGGTATCTTATCATGTTTGAATAAggccgattttgaaaatgttattttcgATACTCA
i cb4.chrX              I 354 I 2
s caeRem4.Crem_Contig15  1332837  98 +  1794024 ACCCTACAGCCACGTGTCATTTCCTATATCCACAATATGGTGGACGGTATCTTATCATCATTGGATAAGACTGACTTTGCAAACATTA---TCGATACTCA
i caeRem4.Crem_Contig15 I 26 I 2
s caeSp111.Scaffold582     19084  95 -   484378 TCACTACAACCGTGTGTCATCTCTTACATCCACAACATGGTGGACGGTATCTTATTATCGTTAAATAAGGCTGATTTTGCAAATG------CTGATACTCA
i caeSp111.Scaffold582  I 10 I 2
s caePb3.Scfld02_0        510220  95 +  4147112 ACTCTACAACCACGTGTCATCTCATATATCCACAACATGGTGGACGGTATCTTATCATCATTGAATAAGACTGACTTCGATAACG------CTGATACTCA
i caePb3.Scfld02_0      I 10 I 129
s caeJap4.Scaffold14268    71045  97 -    96895 -CATTGCAACCATGTGTCATATCCTATATCCACGATTTGGTGGACGGTATATTTTCTTCATTGGAAGAAACTGACTTTTCAATATATA---TAAATACTAA
i caeJap4.Scaffold14268 C 0 C 0

a score=1363.000000
s ce10.chrX              2030224 23 + 17718866 ---ACA---TCTTATTAAGCAGCA-----CGATG
s cb4.chrX              16886875 24 - 21540570 ---AAACATCGTCAC--AGCTGTA-----CGAtg
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15  1332937 21 +  1794024 ---AAA---TGCCAC--AGCTGTA-----CGATG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582     19181 21 -   484378 ---AAA---TGCCAT--TGCTGTA-----CGATG
i caeSp111.Scaffold582  I 2 C 0
s caeJap4.Scaffold14268    71142 29 -    96895 AGATAA---tgataa--tgacaaaaaaactgatg
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        510315 129 +  4147112 I

a score=1872.000000
s ce10.chrX              2030247 4 + 17718866 TAAG
s caeRem4.Crem_Contig15  1332958 4 +  1794024 TAAG
i caeRem4.Crem_Contig15 C 0 I 179
s caeSp111.Scaffold582     19202 4 -   484378 TAAG
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    71171 4 -    96895 tgag
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        510315 129 +  4147112 I
e cb4.chrX              16886899 0 - 21540570 C

a score=-829.000000
s ce10.chrX              2030251 1 + 17718866 -A
s caeSp111.Scaffold582     19206 1 -   484378 -A
i caeSp111.Scaffold582  C 0 I 148
s caeJap4.Scaffold14268    71175 1 -    96895 t-
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        510315 129 +  4147112 I
e cb4.chrX              16886899 0 - 21540570 C
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=-428.000000
s ce10.chrX              2030252 328 + 17718866 TTCCATAGACCCAAT----------------------ACGAAAGTATCAATAACT-------AACCCTAGAA-----------GGTTTGAAAttttgattcaactgatagaaaatg--------------------------ggccgtaataaccga---aattaattgtaaaaaaaattataaacttttattaaatttttaatgatttttttttc---aattttgcga-caatccaagaaacggccatattaaattttaat--tttctcgcaaatgagtgacgtcatttttACACTCACAGGGTTTACTTCATAATTTTATTTGACAAACTAATTGTACTTTTCTCAAACATAGTTCCGTGAAGAAAACT--TGTT--TACCCAAAAAAAATCAGCAATAtttttt
s caeJap4.Scaffold14268    71176 378 -    96895 t---atggacctattcaaatcactgtagaaaaacggaaaaaaaagacaaacaactgggagaaaactcggaaaatgctccaattggtctgaaattttgggagaaactgtcaaaaatgcttccaaactttctcagaaatttttggaacgaaatatcggttttaaacaatttcagaaaaaaatcaacatttttttaaaatc------gatatttcggtccaaaattttctgagcaatcccggaagc----------atttttgacagtttctcccaaa-atgtgAGACCAATccgagaattttccgagtttcctcccagttttctgt----catttttttcgtttttct-----acagtactttgaataggtctattgataataataaaaaaaattcgaaattgtttttt
i caeJap4.Scaffold14268 C 0 I 82
e caePb3.Scfld02_0        510315 129 +  4147112 I
e cb4.chrX              16886899   0 - 21540570 C
e caeSp111.Scaffold582     19207 148 -   484378 I
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=0.000000
s ce10.chrX              2030580 131 + 17718866 atgcggaaaattgctggaaaaattgacaagctgtgtttcaaatataacattgaaaaaaaatagagaaaaacagataaatataatctgaaaaaaagaaaatgtcaagagtgacgtcacttattagcgcggga
e caePb3.Scfld02_0        510315 129 +  4147112 I
e caeJap4.Scaffold14268    71554  82 -    96895 I
e cb4.chrX              16886899   0 - 21540570 C
e caeSp111.Scaffold582     19207 148 -   484378 I
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=273.000000
s ce10.chrX              2030711 3 + 17718866 att
s caeJap4.Scaffold14268    71636 3 -    96895 ATT
i caeJap4.Scaffold14268 I 82 C 0
e caePb3.Scfld02_0        510315 129 +  4147112 I
e cb4.chrX              16886899 0 - 21540570 C
e caeSp111.Scaffold582     19207 148 -   484378 I
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=-6416.000000
s ce10.chrX              2030714 129 + 17718866 tagatttaatttggccgtttcttcgaattttgcaaaatcgg---aaaaatcatt--aaaagtttagaaaatttgattaaaaAAACGACAGTGCTCTTCCAAACTGAACTCTATTTAATATGGACTTTATTTTAT
s cb4.chrX              16886899  66 - 21540570 taggttttttttgg-------------------------------------------agattctaG----TTTGATCATAATAA-----------TTCC--------CCCCATAGAATACAAATATC--tgtga
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold14268    71639  98 -    96895 TAGAAATTCTGAGG-------------------AAAATGGACCTGTAGATGATTGAAAgagtttaa---ttttaattttaaatatg---------tttctgtcagg-cattttttaat---gatttttttcta-
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        510315 129 +  4147112 I
e caeSp111.Scaffold582     19207 148 -   484378 I
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=-2583.000000
s ce10.chrX              2030843 8 + 17718866 AATTCAAC
s cb4.chrX              16886965 5 - 21540570 --att-tc
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0        510444 8 +  4147112 aaattatt
i caePb3.Scfld02_0      I 129 C 0
s caeJap4.Scaffold14268    71737 3 -    96895 -aat----
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     19207 148 -   484378 I
e caeRem4.Crem_Contig15  1332962 179 +  1794024 I

a score=472925.000000
s ce10.chrX              2030851 824 + 17718866  
s cb4.chrX              16886975 934 - 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15  1333141 867 +  1794024  
i caeRem4.Crem_Contig15 I 179 I 8
s caeSp111.Scaffold582     19355 867 -   484378  
i caeSp111.Scaffold582  I 148 I 12
s caePb3.Scfld02_0        510452 878 +  4147112  
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold14268    71740 835 -    96895  
i caeJap4.Scaffold14268 C 0 C 0

a score=0.000000
s ce10.chrX              2031675 8 + 17718866 TAATACAA
e caePb3.Scfld02_0        511330 10 +  4147112 I
e caeJap4.Scaffold14268    72575 0 -    96895 C
e cb4.chrX              16887909 0 - 21540570 C
e caeSp111.Scaffold582     20222 12 -   484378 I
e caeRem4.Crem_Contig15  1334008 8 +  1794024 I

a score=7044.000000
s ce10.chrX              2031683 99 + 17718866 -----AAAGATAAGATTGCATTTGGAAATACACGTTCTGTGTACAAAATCTCGTTGCCCGAAT----ATTTGACCCTAAAGATTTTGATCCGTTGTCGATAAAATTGA
s cb4.chrX              16887909 73 - 21540570 --------------A-ATTGTTGTG--ATACACGTTCCGTGTAGAAAATCTTGTAGCC----CCGGGATATGACCCGATAGATTTTGATT--------------GCGA
i cb4.chrX              C 0 I 87
s caeRem4.Crem_Contig15  1334016 74 +  1794024 ----------GAAGA-TTTGTTAGGAAAGACACGTTCTGTGTACGAAGTCGTGTAGTC----T----GTTTGACCCGATATATTAT-ATT--------------TTGG
i caeRem4.Crem_Contig15 I 8 I 9
s caeSp111.Scaffold582     20234 82 -   484378 -----gaaaaggaaa-tgtgTATGGATATTCACGTTCTGTATACAAAGTCTTGTAGCCTG--T----ATGTGACCCAATATATTTTGATC--------------ATCA
i caeSp111.Scaffold582  I 12 I 1
s caePb3.Scfld02_0        511340 80 +  4147112 -----AGAGATAAAA-TGCGTTTAGATATACACGTTTTGTGTGGAATATCCTGTAGCC----T----ATTTGACCCGATATATTTTGATC--------------GTAA
i caePb3.Scfld02_0      I 10 I 1
s caeJap4.Scaffold14268    72575 72 -    96895 ATGTTATTGTGGAGG-TTAATTGTG----ACCCGGCCTCTTTGCTAGAATGAAT-GCT----G----ATAAGATACGCTTTATTCT----------------------
i caeJap4.Scaffold14268 C 0 C 0

a score=-3234.000000
s ce10.chrX              2031782 28 + 17718866 -TTTTTATCGCAGTATATTT------------TTTGGATAA
s caeRem4.Crem_Contig15  1334099 25 +  1794024 -ATGATCTC----GACATTT----------TGATTGGGTA-
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582     20317 27 -   484378 -TTGTtatcagaaaacattt-------------tcggGTAG
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0        511421 40 +  4147112 -TTGATatcagaaaacatttattttcatcattcttgCATAA
i caePb3.Scfld02_0      I 1 I 30
s caeJap4.Scaffold14268    72647 29 -    96895 CTTCTTTTACGTGGCTATCC------------TTTACCCAA
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16887982 87 - 21540570 I

a score=-1370.000000
s ce10.chrX              2031810 22 + 17718866 ATAA---TTTCAGGTATTTATGTAG
s caeRem4.Crem_Contig15  1334124 11 +  1794024 --------------TGTTGATATAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     20344 14 -   484378 -----------ATATTTCGATAAAA
i caeSp111.Scaffold582  C 0 I 13
s caeJap4.Scaffold14268    72676 25 -    96895 ACAagcgttttctatttttatttat
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        511461 30 +  4147112 I
e cb4.chrX              16887982 87 - 21540570 I

a score=-1059.000000
s ce10.chrX              2031832 2 + 17718866 CA
s caeRem4.Crem_Contig15  1334135 2 +  1794024 AA
i caeRem4.Crem_Contig15 C 0 I 29
s caePb3.Scfld02_0        511491 2 +  4147112 CA
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold14268    72701 1 -    96895 c-
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16887982 87 - 21540570 I
e caeSp111.Scaffold582     20358 13 -   484378 I

a score=-231.000000
s ce10.chrX              2031834 10 + 17718866 TACTATGTAG
s caeSp111.Scaffold582     20371  7 -   484378 ---CATAGAA
i caeSp111.Scaffold582  I 13 I 6
s caePb3.Scfld02_0        511493 10 +  4147112 TATTATATaa
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold14268    72702  9 -    96895 tgTTAGAAA-
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16887982 87 - 21540570 I
e caeRem4.Crem_Contig15  1334137 29 +  1794024 I

a score=-822.000000
s ce10.chrX              2031844 11 + 17718866 TATTATCTTAT
s caeSp111.Scaffold582     20384 10 -   484378 CATTTGATta-
i caeSp111.Scaffold582  I 6 C 0
s caeJap4.Scaffold14268    72711  5 -    96895 TATTT------
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        511503 30 +  4147112 I
e cb4.chrX              16887982 87 - 21540570 I
e caeRem4.Crem_Contig15  1334137 29 +  1794024 I

a score=593.000000
s ce10.chrX              2031855 4 + 17718866 GTAG
s caeRem4.Crem_Contig15  1334166 4 +  1794024 ataa
i caeRem4.Crem_Contig15 I 29 I 3
s caeSp111.Scaffold582     20394 4 -   484378 atat
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    72716 4 -    96895 ATGG
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        511503 30 +  4147112 I
e cb4.chrX              16887982 87 - 21540570 I

a score=-110.000000
s ce10.chrX              2031859 9 + 17718866 TATTATTTT
s cb4.chrX              16888069 9 - 21540570 ttttgtcgt
i cb4.chrX              I 87 C 0
s caeRem4.Crem_Contig15  1334173 9 +  1794024 tattttcaa
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582     20398 9 -   484378 tattgtttt
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    72720 3 -    96895 TAT------
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        511503 30 +  4147112 I

a score=-1016.000000
s ce10.chrX              2031868 18 + 17718866 ATTTTAGCAAAAAATTAT
s caeSp111.Scaffold582     20407 14 -   484378 ----tcttagtGGATAGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        511533 17 +  4147112 atcctctcaaaaaataa-
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold14268    72723  9 -    96895 ---------AAAAATCAT
i caeJap4.Scaffold14268 C 0 I 47
e cb4.chrX              16888078  0 - 21540570 C
e caeRem4.Crem_Contig15  1334182  0 +  1794024 C

a score=-20016.000000
s ce10.chrX              2031886 63 + 17718866 CAACCTCCTCTCCGTTTAACAATT----GTATATAAACTAAAAGTTGAGGCAAATGTTGCAAGATGC------------------
s cb4.chrX              16888078 39 - 21540570 ------------tttctaGAAGAA--ATAAACCCCCATAAAAATTTAT--------------------------------TGGCc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1334182 50 +  1794024 ------------ttttcaacatta----aaattttagtATACATTTATCATATAT-----ATCACCC------------ATGG--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     20421 81 -   484378 ATatcatctctctttttgtatttt--cttcatttgagTATTAAATCAGAACACATTGGCAAGCACACAGCATTAATCTTCttg--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        511550 60 +  4147112 -------tcctcTTGCCACACTCTGAATAAATCCGATAATTAGTTGTTGATAGATTTCAAACTACGc------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    72732 47 -    96895 I

a score=290123.000000
s ce10.chrX              2031949 555 + 17718866  
s cb4.chrX              16888117 489 - 21540570  
i cb4.chrX              C 0 I 1066
s caeRem4.Crem_Contig15  1334232 501 +  1794024  
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582     20502 614 -   484378  
i caeSp111.Scaffold582  C 0 I 13
s caePb3.Scfld02_0        511610 644 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold14268    72779 633 -    96895  
i caeJap4.Scaffold14268 I 47 C 0

a score=-39586.000000
s ce10.chrX              2032504 128 + 17718866 TAGTT---TCGTATGTGTAAATTGTAATGATTTTATTGTTAGGAACAATAACTAG--AAATTGGAAAAATAATT---------------TCAATTTCAACTTC-ATTGCTA-----TTGAGAAAAAACTACTATAGTTT--TAGGGAGGAGGATAT
s caeRem4.Crem_Contig15  1334739 105 +  1794024 CTATG---CTGTGCGTTATGTCCAATGTTCT----------------CGTGTTGA----ATCTCAAAACTCGTT-------------------TTAAAACTAC-GATGATg--------taacaaaacaacaaaagtgCATTAGTGACCATGACAT
i caeRem4.Crem_Contig15 I 6 I 133
s caeSp111.Scaffold582     21129  65 -   484378 CAGTG---TTCCAAGTTTAG-TCAAAATATT----------------ATAGTTGA-------TTAAATACTTTT-----------------TGTTGCAATTTT-----ATG------------------------------------------AAA
i caeSp111.Scaffold582  I 13 I 5
s caePb3.Scfld02_0        512256 148 +  4147112 CAGAGTGATTGTAGGCTcatctcaaaataatttcctAAT---GAAAAATCGCAGAAACgctctcaaaagttttttcctcAGGAAATCATACTACTGCATTTTCCAGCGATGAATATTTCTAAATTGTTTACAAAAATCT-----TGAACTCGAAAA
i caePb3.Scfld02_0      I 2 I 14
s caeJap4.Scaffold14268    73412  17 -    96895 ---------------------------------------------------------------gaaaaaaaacc-----------------------aatttt-----------------------------------------------------
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16888606 1066 - 21540570 I

a score=-23980.000000
s ce10.chrX              2032632 105 + 17718866 GTTCCGAGCTCATGACTTTTTCATGACTTTGTCACAATTTTTTGATCTCCCGA------------------------------------------------------------------------------------------AGTGTATGGGATTGCCGTTTCGATAAAATTTACTGCTATCATTA----TTTTGATG
s caeSp111.Scaffold582     21199  44 -   484378 -----------------------------------------------------------------------------------------------------------------------------------------------ACATTGTGAAATTtcaacc-------aattttttg-aaccataa----ttttgatt
i caeSp111.Scaffold582  I 5 I 13
s caePb3.Scfld02_0        512418 194 +  4147112 ATTCACATTTCCT-CTTGTCTCACTTCTCTgtgcttttcatttttccgcccgaaagaaaaaagttctttcCCTCTTTCCGGTCATCTTTGTTTATTTGAGAAGGCTGGGAGGCTCAAGAGGATCAGAAACGGATAAGTACTCAACACCTTGGAATGGCAATCTA---AATATTCTTTA-TGgtataattcttttttttt
i caePb3.Scfld02_0      I 14 I 68
s caeJap4.Scaffold14268    73429  24 -    96895 --------------------------ctttttcctatttttcttatcATG-----------------------------------------------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16888606 1066 - 21540570 I
e caeRem4.Crem_Contig15  1334844 133 +  1794024 I

a score=0.000000
s ce10.chrX              2032737 51 + 17718866 AAATTGTTGTCATTGTTTTCCCTGCCCATATCTATTCAAAAATTAGCAAAA
e caePb3.Scfld02_0        512612 68 +  4147112 I
e caeJap4.Scaffold14268    73453  0 -    96895 C
e cb4.chrX              16888606 1066 - 21540570 I
e caeSp111.Scaffold582     21243 13 -   484378 I
e caeRem4.Crem_Contig15  1334844 133 +  1794024 I

a score=289512.000000
s ce10.chrX              2032788 382 + 17718866 CTT----------------CAACTAACCGAAACATCGTCGCCAAATTTGATGGAGTGAATCAAATGTCTCATGTCGTAACTCTCCGGTTGCGTAGCAGCCGAGTGTGTCGACAGATGAAAGTTACCAGGAACTTTGTTAATTTCGAATCGACTTTCAAACCGACATCCTCCATCTCCAATTGAGACTTTATTCGTTTGATCAACAAACCCGACTTCATGGCGGCCATTCTCATCTTGAATGTCTACCCCAAGATCTGGAAATTTTCAAAAT------------------AAAATTTA---AATCAGTGATGATAA-----AAAATCATACATTCGCAGGCCATATGAGGAAAAGATACATTCACTTGGACATCAATTTTCCCTTCTCTTCCCGGGTCGTCTATGAAGAACTCGCTTCTTCTGAA
s cb4.chrX              16889672 382 - 21540570 CTC----------------CCACTCACCGAAACATCATCTCCAAACTTGATGGAGTGAATAATATGTCTCATGTCATATCCGTCGGGTTGCGTGGTAGCCGAGTGCGTCGAGAGATGGAAGTTACCGGGCACTTTATTAATCTCGAATCGGCTTTCAAACCGACATCCTCCATCTCCCACTGGTACTTTGTTGGTGTGGTCAATGAATCCGACCTCATGTCGTCCGTTTTCGTCTTGGATGTCAACTCCGATATctggaaactcagaaaat------------------tag--------aGTTTATAtctgaaataataaaaatctCACAATCACAAGCCATGTGGGGAAATGAAACATTCACTTGAACATCAATTTTACCCTCTCTTCCTGGGTCGTCGATGAAGAATTCGCtccttctgaa
i cb4.chrX              I 1066 C 0
s caeRem4.Crem_Contig15  1334977 381 +  1794024 ttc----------------gtACTAACCGAAACATCGTCTCCAAACTTGATGGAGTGAATAGTATGTCTCATGTCGTAGTTGTCGGGTTGCGTGGCAGCAGAATGTGTTGAGAGGTGAAAATTTCCGGGGACTTTGTTAATCTCGAATCGGCTTTCGAATCGGCAACCTCCGTCGCCAATAGGCACCTTGTTAGTATGGTCGATGAATCCCACTTCGTGTCGGCCGTTTTCGTCTTGAATATCTACAccgagatctgaaaa-----aaaac------------------taaattttcttagtttatactt----ttctgaaaattatacatTCACAAGCCATATGAGGAAATGACACATTAACTTgaacatcaatttttccttctcttcctGGGTCATCGATGAAGAACTCGCTCCTTCTAAA
i caeRem4.Crem_Contig15 I 133 I 32
s caeSp111.Scaffold582     21256 370 -   484378 -------------------------ACCGAAACATCATCGCCAAACTTGATAGAATGAATCACATGTTTCATATCGTAGCTTTCTGGTTGTGCAGCGGCAGAATGCGTTGAGAGATGAAAATTTCCCGGCACCttattaatttcaaatctgCTCTCAAAACGACATCCACCATCACCAATCGGCGCTTTATTTGTATGGTCAATGAATCCCACTTCATGACGACCATTCTCGTCTTGAATGTCTACACCGATGTCTGGA-------ATAAT------------------CAAATTC----AAGGTATCACGAAATATTTGTTAAAATTACAATCACAAGCCATATGTGGAAAAGAAACGTTAACTTGCACATCAATTTTGCCTTCTCTTCCTGGAtcatcaatgaaaaactcgCTCCTTCTGAA
i caeSp111.Scaffold582  I 13 I 31
s caePb3.Scfld02_0        512680 397 +  4147112 ttctgatcaaACGCTGAGTATACTCACCGAAACGTCATCACCAAACTTGATCGAATGAATGATATGCTTCATATCATAATTTTCCGGTTGAGAAGCAGCAGAATGTGTTGAgagatgaaaatttccagggACTTTATTAATTTCAAATCTGCTTTCGAATCGACATCCACCATCACCAAGTGGAACTTTATTCGTATGATCCACGAAACCCACTTCGTGTCGCCCGTTCTCATCTTGAATGTCTACTCCAAGGtctaaaac-----ataaa------------------aaaatca----aatgagtgaaacaaaaaatgtggatCTTACATTCGCATGCCATATGAGGGAATGATACATTTACTTGTACATCAAtctttccctctcttcccGGATCGTCGATGAAGAATTCGCTCCTTCTGTA
i caePb3.Scfld02_0      I 68 C 0
s caeJap4.Scaffold14268    73453 387 -    96895 ----------------------CTCACCGAAACATCATCACCAAATTTGATAGAGTGTATGATGTGGCGGAAGTCATAATCTTCCGGTTGGGATGCGGCCGAATGGGTTGACAAATGAAAGTTACCGGGAACTTTGTTAATTTCAAATTTGCTCTCAAACCGACACCCTCCGTCACCAATAGGCACCTTGTTTGTGTGGTCAACAAATCCGACCTCGTGTCGGCCATTCTCGTCCTGGATATCCACTCCGAGATCTGAACA-----GAGACGTTGCAGGGGGGAGGGTGGAAACTG----GATAAatattgaaatgtc------acgtacATTCGCATCGCATATGGGGGAAGGAAACATTGACTTGCACGTCTATCTTGCCTTCTCTTCCCGGGTCGTCAATGAAAAACTCACTCCTtctgaa
i caeJap4.Scaffold14268 C 0 C 0

a score=-47.000000
s ce10.chrX              2033170 2 + 17718866 AA
s cb4.chrX              16890054 1 - 21540570 -a
i cb4.chrX              C 0 I 18
s caePb3.Scfld02_0        513077 2 +  4147112 CG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    73840 2 -    96895 aa
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     21626 31 -   484378 I
e caeRem4.Crem_Contig15  1335358 32 +  1794024 I

a score=-1259.000000
s ce10.chrX              2033172 21 + 17718866 ----GGATATAATCATTTTTGAGAG
s caePb3.Scfld02_0        513079 18 +  4147112 ----TTGT---Ctcagttttcagtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    73842 25 -    96895 ggaaaaaaattctaaattttgttTA
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16890055 18 - 21540570 I
e caeSp111.Scaffold582     21626 31 -   484378 I
e caeRem4.Crem_Contig15  1335358 32 +  1794024 I

a score=613.000000
s ce10.chrX              2033193 21 + 17718866 AAAGTTGCGTTTATGTTTTTG
s caeJap4.Scaffold14268    73867 18 -    96895 AA---CGCGCCTAAGTTTTTG
i caeJap4.Scaffold14268 C 0 I 671
e caePb3.Scfld02_0        513097  0 +  4147112 C
e cb4.chrX              16890055 18 - 21540570 I
e caeSp111.Scaffold582     21626 31 -   484378 I
e caeRem4.Crem_Contig15  1335358 32 +  1794024 I

a score=0.000000
s ce10.chrX              2033214 1737 + 17718866  
e caePb3.Scfld02_0        513097    0 +  4147112 C
e caeJap4.Scaffold14268    73885  671 -    96895 I
e cb4.chrX              16890055   18 - 21540570 I
e caeSp111.Scaffold582     21626   31 -   484378 I
e caeRem4.Crem_Contig15  1335358   32 +  1794024 I

a score=453.000000
s ce10.chrX              2034951 9 + 17718866 AAAACTTGA
s caePb3.Scfld02_0        513097 9 +  4147112 aaaattcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    73885 671 -    96895 I
e cb4.chrX              16890055 18 - 21540570 I
e caeSp111.Scaffold582     21626 31 -   484378 I
e caeRem4.Crem_Contig15  1335358 32 +  1794024 I

a score=535.000000
s ce10.chrX              2034960 14 + 17718866 AAACATATTTTTAT
s cb4.chrX              16890073 14 - 21540570 AAACCTAAATTTGT
i cb4.chrX              I 18 C 0
s caePb3.Scfld02_0        513106  7 +  4147112 -------aattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    73885 671 -    96895 I
e caeSp111.Scaffold582     21626 31 -   484378 I
e caeRem4.Crem_Contig15  1335358 32 +  1794024 I

a score=180.000000
s ce10.chrX              2034974 1 + 17718866 A
s caeRem4.Crem_Contig15  1335390 1 +  1794024 A
i caeRem4.Crem_Contig15 I 32 C 0
s caeSp111.Scaffold582     21657 1 -   484378 A
i caeSp111.Scaffold582  I 31 C 0
s caePb3.Scfld02_0        513113 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    73885 671 -    96895 I
e cb4.chrX              16890087 0 - 21540570 C

a score=262377.000000
s ce10.chrX              2034975 617 + 17718866  
s cb4.chrX              16890087 568 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1335391 537 +  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     21658 533 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        513114 535 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    74556 567 -    96895  
i caeJap4.Scaffold14268 I 671 C 0

a score=-3034.000000
s ce10.chrX              2035592 19 + 17718866 TTGCTGcgcagaaaagttg
s cb4.chrX              16890655  9 - 21540570 ----------gagaagccg
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0        513649  5 +  4147112 -------------aattc-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    75123  8 -    96895 ---------tgaaaaat--
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     22191  0 -   484378 C
e caeRem4.Crem_Contig15  1335928  0 +  1794024 C

a score=-1204.000000
s ce10.chrX              2035611 26 + 17718866 acaacattttagattttggcaaaaat
s caePb3.Scfld02_0        513654 10 +  4147112 acaa--------------acaaaa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    75131  6 -    96895 --------------------aaaaat
i caeJap4.Scaffold14268 C 0 I 51
e cb4.chrX              16890664  0 - 21540570 C
e caeSp111.Scaffold582     22191  0 -   484378 C
e caeRem4.Crem_Contig15  1335928  0 +  1794024 C

a score=-4034.000000
s ce10.chrX              2035637 76 + 17718866 catccttttttcaaaaatctgagccaccataaTTTTTTTTCAAATGTCAGAATGTCTCCTTTCGATGTTTTTTTTT
s caeRem4.Crem_Contig15  1335928  6 +  1794024 ------------aaagat----------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        513664  6 +  4147112 ------------aaaaaa----------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    75137 51 -    96895 I
e cb4.chrX              16890664  0 - 21540570 C
e caeSp111.Scaffold582     22191  0 -   484378 C

a score=-4636.000000
s ce10.chrX              2035713 33 + 17718866 GAACATTTTTTGCCTAAAAAGCAG---------AG--TCACTAT
s caeRem4.Crem_Contig15  1335934 15 +  1794024 -------------ttaaaagaaag---------ggaa-------
i caeRem4.Crem_Contig15 C 0 I 1
s caePb3.Scfld02_0        513670 13 +  4147112 -------------tgaaaaagaag---------ag---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    75188 35 -    96895 GGCCAGCGTTGCCCTTGAAAGCGGTCCGtccgcat---------
i caeJap4.Scaffold14268 I 51 C 0
e cb4.chrX              16890664  0 - 21540570 C
e caeSp111.Scaffold582     22191  0 -   484378 C

a score=68.000000
s ce10.chrX              2035746 3 + 17718866 TCA
s caeJap4.Scaffold14268    75223 3 -    96895 taa
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        513683 0 +  4147112 C
e cb4.chrX              16890664 0 - 21540570 C
e caeSp111.Scaffold582     22191 0 -   484378 C
e caeRem4.Crem_Contig15  1335949 1 +  1794024 I

a score=-31231.000000
s ce10.chrX              2035749 330 + 17718866 AAAAAGTATTGCAAATAAGAAAAATGTCTAATTGAACTTGAAGCCGTAAAAATAAATCT-------TCTCTACATTTAGTAGGAGTGC-----AACGTC-TTAGCTGCAAAGTGGATGAAAC-------GGAAAA----------------------TGGCTTTTTCTTATTCGAAACGGGACACAT-TCGCTACCAAGGTGATTGAGCACATAAATG-------AGTCAAATTTATTCATCGCAAAAATG------------------AATTTCGCATAGAAAA----GGAAAACGACAAAGAATATCCGATGGTCCAAATATATATATAAAAGCAAGATGAAG------TCGAAATATTTT----------TCGAGATT---------------TGTTAAATCTAGACTAATG---TTTAGAACAGAAAAAATA
s cb4.chrX              16890664 227 - 21540570 ----------tgaaatgagagaagag----------------------------------------CTTCTGGTT---------GTGCTCGGAGGT----CCAGTTGCAA--TGG--GAAACAGCCTTGAGAAGAGGCGAATGGGatggaaa-----tttcggattcgGAGA-G----------------GTTTCCAAGgcaata-------aaaaggaaaaaaaagct--ttttattcagaatcgaagaa------------------aaattcgtatagaaaa----aaa-------------------tcg----aaaaaacgggaaaaataataa-tgaggA----------------------------GGGGTCC---------------GAATATACACAG---------------AGAAGA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1335950 312 +  1794024 acgaaacaaaccagacgaaaaaagag----------attgaagccgtaaaaTGGAAGAtgctcttttttctgcttttagTGAAAGTGCTCTT-GGC----CCAGTTGCAA--TGG--GAAACGgc----ggaaaa----aatgaaacgaaaaacaCTCTCCGTATTCTGGAT-GAAATAAGACACTTGTTGTTTCCAGGGTGATAT--GGTCAGAAGG--------------TTTATTCatcgtaaaaatg------------------aatttcgaaaaaaaaa----gaa-------------------acgttcCAAATATACATAGAAACATTAG-TGGagctt---ttttgttattttaacTC-----TGGAATCA---------------GGTTAGAACTAGACTAGCA--------AGCAAA-------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582     22191 318 -   484378 aaaaagaattcgaaataaaaaaaatgggaagaagagattgaaGCCGTAAAATGGAAGATGCACAG-CGTCTGCTTTTAGTGAAAGTGCTTTT-CGTGTTGCCAGTTGCAA--TGG--GAAAC-------GGAGGA----------------------TGCCgtatttcaaat-gaaacgaGACACTTGTTGTTCCCAGGGTGATGACGGGTCAGAAGC-------------GTTTATTCATcgtaaaaatg------------------aatttcgaaaaagtattttaaaA---------------------GTTCCAAATATACACAG---AATCAG-TGAA----ACAGGttgatatttcaattttttaatcaaataa---------------GTTCAGTTCTAGTCTAGCG-------GAGCAGATAGAATA
i caeSp111.Scaffold582  C 0 I 15
s caePb3.Scfld02_0        513683 303 +  4147112 ------------------------------------attgaagCCGTAAAATGAGAGATGCTCCG-CTTCTGCTTTTAGTAAAAGTGCTCTT-AGCGTTGCCAGTTGCGt--tgg--gaaacagaaaaaggaaaa----------------------cgcagtatttcaaat-gaaacgaGACACTTTTTGTTCCCAGGGTGATGC--GGCTTGAAGG-------------TTTTATTCATcgtaaaaatg------------------aatttcg-aaaagtat----aAA---------------------GTTCCAAATATAcacagaaaaatcag-agaagcttactttttgttattttagcGTTTCAATCGAATCATAGTCAATCATATTGGTTCACATCTAATCTAGCG-------TATCAAA-ATAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    75226 246 -    96895 ------------aaaaaaaaaaaaaa---------------------------aaaactccgc---cttcttttt-----------------------------ttttaa--t----gaaat-------ggaaaa----------------------ttc-------------g---------------tGTTCCCAAGGAGACAG------AAAGCG----------CAATTTTATTCATCGTaaaaaaaTGAATACACATTATGCACAAATACGGGATGATGA----GGA-------------------AAGCTTC-GATGGAGGaagaaaagagag-agagagagagggatcGAAATTGTATTTAGTTTATACATACA---------------TTATGCACTAAAACAAGTCTAATTGATAACAATAAAGATG
i caeJap4.Scaffold14268 C 0 C 0

a score=-3412.000000
s ce10.chrX              2036079 15 + 17718866 TATGTAATGCAATAA-------
s cb4.chrX              16890891 12 - 21540570 ---GTAATCTAAAAA-------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15  1336262 12 +  1794024 ---ATAACATGAGAA-------
i caeRem4.Crem_Contig15 C 0 I 7
s caePb3.Scfld02_0        513986  8 +  4147112 -------ACTGAGAA-------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold14268    75472 12 -    96895 ----------AAGGAATTTTTG
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     22509 15 -   484378 I

a score=262452.000000
s ce10.chrX              2036094 321 + 17718866 AAATTAATATTTGGTTGGATAATTTAAAGGCGGCGATTGGAATGGTCCGGTCCCGAAATGATAATGCCCATTAGCAATTGGATATGCAAAAGACATCT--------GTAAA------------TAAGAAACAGTATAAAAAGAAAT---AAAAAGAGAGCAAAAAAAAAACCAACATTTGAAACAGAAGACGAGCTTCCAAATTTGAGTAATTCCTTCTTTTGGTTCTTGTCTTTTCTTCTATTACAAAGCCATATTCCCATCCAACAAATTACCGTGAGAATGACAACAAGAGAAAATATACAAATAAGTGCAACAGCCCATCCGTACTTTTCTTGCCTGGAA
s cb4.chrX              16890905 321 - 21540570 ---TCAATATTTGGTTGGATAATTTAATGGTGGTGATTGGAATGGTCCGGTTCCGAAATGATAGTGTCCATTTGCAATTGGATAGGCAAacgacatctgaaaattggaaaa--------atgggaaaaaatgcccagaaggaaaaa---aaaat---------agaaaaacaaacatttgaaacagaaGACGCGCTTCCGAATTTCAACAGCTCCTTCCTTTGGTTCTTGTCCTTCCTCCGATTACACAGCCAAATGCCCATCCAACAGATCACGGTCATAATGACAACCAGAGAAAATATGCAGATCAGTGCCACAGCCCAGCCATATTTTTCTTGCCTGAAA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15  1336281 313 +  1794024 ATTTTAATATTTGGTCGGATAATTTAGAGGCGGTGATTGGAATGGTCCGGTACCGTAATGATAATGTCCATTTGCCATTGGATATGCAAACGACATCT--------GCAAA--------ATTAAACTAAATGACgtgagaaaaagc---aaaa------------ataaacaaacattcgaaactgaagaagagcttccgaatttcaacaattctttTCGTTGGTTCTTGTCTTTCCGGCGGTTACACAACCATATTCCCATCCAACAAATTACAGTCATAATGACAACTAGAGAAAATATGCAAATGAGCGCGACAGCCCATCCATATTTTTCTtgcctgaaa
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582     22524 312 -   484378 GAATTAATATTTGGTCGGATAATTTAGAGGAGGTGATTGGAATGGTCCCGTTCCGAAATGGTAGTGCCCATTTGCAATGGGATAGGCGAatgacatct--------gaaaa---------------aacgtattttgaaaataaat---cagCTT------TCGAATAAACTAACGtttgaaactgaagaagAGCTTCCAAATTTGAGTAGTTCTTTCCGTTggtttttgtcttttcttcGGTTACAAAGCCAGATACCCATCCAACAAATGATTGACATAATGACAATTAGtgaaaaaatgcaaacgAGTGCAACTGCCCatccatatttttcttgcCTGAAC
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0        514001 317 +  4147112 --ATTAATATTTGGTCGGATAATTTAGAGGAGGTGATTGGAATGGTCCTGTTCCGAAGTGGTAGTGTCCATTGGCAATGGGATAAGCGAATGACATCT--------GGaaa--------ac---ataacataaacaaaaaatgtatgaaaaaatg------gaggaaaagcATACGTTGGAAACTGAAGAAGAGCTTCCAAACTTGAGTAGTTCCTTTCGTtggtttttgtcttttcttcgGTTACATAACCAAATTCCCATCCAACAAACGACAGTCAAAATGACAACTAGTGAGAAAATACAGATGAGTGCAACTGCCCATCCATACTTTTCTTGCctaaaa
i caePb3.Scfld02_0      I 7 I 4
s caeJap4.Scaffold14268    75484 324 -    96895 ATATCAATACTTGGTTGGATAATTTAGAGGCGGCGATTGGAATGGTCCGGTTCCAAAATGGTAATGTCCGTTGGCAATTGGATAGGCGAATGACATCT--------GGAAATATTTACAAtttaataaattaataaaaaaagaaga---agaag---------aagaaaacaaacatttgaaacagaagaagaGCTTCCAAATTTGAGCAGTTCTTTCCGTTGGTTTTTATCTTTTCTTCTATTGCAAAGCCAGATTCCCATCCAGCAGATTACGGTAGTAATAACCACTAGTGAGAAGATACAAATCAAAGCGACCGCCCAACCGTATTTTTCTTGCCTGAAT
i caeJap4.Scaffold14268 C 0 C 0

a score=-1936.000000
s ce10.chrX              2036415 1 + 17718866 -A
s cb4.chrX              16891226 1 - 21540570 -T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1336594 1 +  1794024 -a
i caeRem4.Crem_Contig15 C 0 I 30
s caeSp111.Scaffold582     22836 1 -   484378 -A
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    75808 1 -    96895 T-
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        514318 4 +  4147112 I

a score=-120.000000
s ce10.chrX              2036416 24 + 17718866 AATAG--GTAAACT-GGAATAAGAAAA
s cb4.chrX              16891227 18 - 21540570 -------ATAAGCT--gcataattaaa
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582     22837 27 -   484378 TTTAGTTTTGAGCttgaaataacaaaa
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    75809 22 -    96895 ---aatggaaaaat--aaatgagaaaa
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        514318  4 +  4147112 I
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=955.000000
s ce10.chrX              2036440 5 + 17718866 AAAAA
s cb4.chrX              16891246 5 - 21540570 aaaaa
i cb4.chrX              I 1 C 0
s caeJap4.Scaffold14268    75831 5 -    96895 aacaa
i caeJap4.Scaffold14268 C 0 I 16
e caePb3.Scfld02_0        514318 4 +  4147112 I
e caeSp111.Scaffold582     22864 0 -   484378 C
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=-937.000000
s ce10.chrX              2036445 264 + 17718866 TTAGGGAA--------------------------------AAATTCGATTATACTGGtaaatattctttttttttatattttaattttaattttaattataacaatataaa------------ttacattttttgttaaattttatataaa-------------------------GACGGGTTAATTAAATTGTTCATGATATAAAATTTGTGGTATATAGTTTGGTATTTTGATAAAGTCGCTGTACTTATTCAATTTTTCCAAAACAGTTTCCAATTTGCACAAAATAGCAAATTAATCACAGTGTCGGAATTATATTTAATTTTTTGAC
s cb4.chrX              16891251 302 - 21540570 ctgtaagaCCCTCTaacttaactttgagccagtttatatcagtttctattagagtcataaaaaaactttcaactaataaattg--ttcattaTTCATTAtgttatcacaaacattttatcagtttacacttttt-ctatatcttgtatagaaaatgagatatataaggTCAAACCTGACGGATTGAATAAA------AAGACCCGAAACTTTTTACTTAGagccatttatctcg-----gttccagt--------aAAAGATctaaaaaagctgtcaact-------gataaattgtttatcataacgtcacaa--acattttatcagttgac
i cb4.chrX              C 0 I 35
e caePb3.Scfld02_0        514318   4 +  4147112 I
e caeJap4.Scaffold14268    75836  16 -    96895 I
e caeSp111.Scaffold582     22864   0 -   484378 C
e caeRem4.Crem_Contig15  1336595  30 +  1794024 I

a score=0.000000
s ce10.chrX              2036709 43 + 17718866 TTGAAAATACCAATTTTGGAAAGAGTTACTGTTTATTATCGAA
e caePb3.Scfld02_0        514318  4 +  4147112 I
e caeJap4.Scaffold14268    75836 16 -    96895 I
e cb4.chrX              16891553 35 - 21540570 I
e caeSp111.Scaffold582     22864  0 -   484378 C
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=-78.000000
s ce10.chrX              2036752 92 + 17718866 TCGGTTAAAATCTTGCAGTACAATAAAAATACCATTTTTAATTTATTGATGGAGAATTATTTTTAAAAATCTATTTTCAAAAATTAATCCGA
s cb4.chrX              16891588 57 - 21540570 tcagctcaaacttggcag------aGTGGGACCACTTTTA----------------------TTACAGATTT-------GAAAATAACTTAA
i cb4.chrX              I 35 C 0
e caePb3.Scfld02_0        514318  4 +  4147112 I
e caeJap4.Scaffold14268    75836 16 -    96895 I
e caeSp111.Scaffold582     22864  0 -   484378 C
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=-1534.000000
s ce10.chrX              2036844 18 + 17718866 ----ACTTATTATTTTAAACAT
s cb4.chrX              16891645 18 - 21540570 ACGAAGTCT---TTTAAGGaa-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0        514322 16 +  4147112 ----atttttcgtTTTAGAT--
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold14268    75836 16 -    96895 I
e caeSp111.Scaffold582     22864  0 -   484378 C
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=-398.000000
s ce10.chrX              2036862 5 + 17718866 -AATCA
s cb4.chrX              16891663 3 - 21540570 aaa---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     22864 5 -   484378 -aatca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        514338 5 +  4147112 -GAGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    75836 16 -    96895 I
e caeRem4.Crem_Contig15  1336595 30 +  1794024 I

a score=653.000000
s ce10.chrX              2036867 3 + 17718866 AAC
s cb4.chrX              16891666 3 - 21540570 aaC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1336625 3 +  1794024 AAC
i caeRem4.Crem_Contig15 I 30 C 0
s caeSp111.Scaffold582     22869 2 -   484378 -ag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        514343 2 +  4147112 -AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    75836 16 -    96895 I

a score=110018.000000
s ce10.chrX              2036870 150 + 17718866 TC----ACCATTCAGTATTTGTGCAACATCCACTAGCACAGCATCCAATATCTCTATAACATCGTTCGGTGATGGTATTTGAAGAATCTGCGATCGAATACACACAGTCGTAAAACGACGGGTCAATGGCTGGAAATAATGTCAGT--TGGTTAA-A------
s cb4.chrX              16891669 149 - 21540570 CT----ACCACTCAGTATTGGTACAACATCCGCTGGCACAACAGCCAATATCTCTATAACATCGTTCGGTGATCGTTTCCGACGAATCGACAATCGAGTACACACAGTCATAAAATGCAGGGTCGATGGCTACAAAAAGTTTCCAT--TTATTAA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1336628 150 +  1794024 TT----ACCATGCAGTATTGGTACAACATCCGCTGGCACAACAACCAATATCTCTGTAGCATCGTTCGGTCACAGTATTCGAAGAATCGACGATTGAGTACACACAATCATAGAATGAAGGGTCGATGGctaaaatgaactttttt--tgtttgaa-------
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582     22871 144 -   484378 tt----acCATTCAGTATTACTACAACATCCGCTTGCACAACAACCAATGTCTCTATAACATCGTTCGGTAATAGTTTCCGACGAATTGACGATCGAATATACACAGTCGTAAAATGAGGGATCGTAAGCTAAAAGTTTCAGA-------TTAAA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        514345 151 +  4147112 TTACCAACCATTCAGTATTGGTACAACATCCGCTGGCACAGCAACCAATATCTCTGTAACATCGTTCGGTGATAGTCTCCGAAGAATCGACAATCGAGTATACACAGTCGTAGAACGACGGGTCGATGGCTAAAAAATGCTGGTGT----TTTGG--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    75852 157 -    96895 tt----acCAGTCTGTATTAGTACAGCAACCGCTCACGCAGCATCCAATATCTCTATAACATCGTTCGGTGACCGTTTCCAAAGAGTCAACATTTGAGTATACACAGTCGTAAAAGTTGGGGTctattgctgaaaatttttatttttatatttag--gttctg
i caeJap4.Scaffold14268 I 16 C 0

a score=-8186.000000
s ce10.chrX              2037020 21 + 17718866 -CAGGGAATATTTATTAATTTT
s cb4.chrX              16891818 19 - 21540570 -TAAATAACTACAGTATAGT--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     23015 19 -   484378 --AGGTGGTAAGCGGAAGGAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        514496 19 +  4147112 --aacttatttttctaaaatt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    76009 21 -    96895 aaaaattcatctATTAAATTT-
i caeJap4.Scaffold14268 C 0 I 6
e caeRem4.Crem_Contig15  1336778 12 +  1794024 I

a score=114727.000000
s ce10.chrX              2037041 111 + 17718866 ACTCACTGTTCACTCTCTTCTCGAATAAAACAAGGCGAGGTGCTTCAATGGCATCGGAGAGAAGTTTCTCGATGGTTCGAAGAGAGGTGATGTTTTTTGGCTCTGAAA------GAT
s cb4.chrX              16891837 117 - 21540570 ACTCACTATTAGTTCTCTTCTCAAAAAAGACTAGTCGAGGTGCTTCAATAGCATCGGCGAGAAGTTTCTCGATGGCTCGAAGAGAGGTGATGTTTTTTGGCTCTGGAATTattgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1336790 111 +  1794024 ACTTACGGTTTACtctcttctcaaaaaagacAAGTCGAGGTGCTTCAATGGCATCCGAAAGAAGTTTCTCGATGATTCGAAGAGAGGTTATGTTTTTTGGCTCTGTAA------AAA
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582     23034 111 -   484378 ACTCACTGTTAagtctcttctcaaaaaagactAAACGAGGCGCTTCAATGGCATCAGAAAGAAGTTTCTCGATGGCTCGAAGAGAGGTGATGTTTTTTGGCTCTGTAA------AAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        514515 110 +  4147112 actTACTGTTtattctcttctcaaaaagaacAAGTCGAGGTGCTTCAATGGCATCAGAGAGAAGTTTCTCGATAACTCGAAGAGAGGTTATGTTTTTTGgctctggaa------ga-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    76036 111 -    96895 ACTTACTGTTAACTCTCTTCTCGTAGAAAACAAGTTGAGGAACTTCAATAGCATCGGAAAGAAGTTTCTCGGCGGTTCGAAGAGAGGTTATGTTTTTAGGATCTGGaa------aat
i caeJap4.Scaffold14268 I 6 I 171

a score=584.000000
s ce10.chrX              2037152  6 + 17718866 ----CGAGAA
s cb4.chrX              16891954 10 - 21540570 ttgatgaaaa
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig15  1336901  8 +  1794024 --GATAAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     23145  6 -   484378 ----CGGAAA
i caeSp111.Scaffold582  C 0 I 396
e caePb3.Scfld02_0        514625  0 +  4147112 C
e caeJap4.Scaffold14268    76147 171 -    96895 I

a score=-6620.000000
s ce10.chrX              2037158 69 + 17718866 -----CACAGGAAAT---GAGACACCGTTCATTTTTTTGGTCACAAAATGTTTATTAAAAGCAAAATTTGTCTGCTG
s cb4.chrX              16891972 38 - 21540570 -----TCGCGGAATTCCGGACGC-----------TAAAGATTAGGAAATGTTTG-----------------------
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15  1336909 29 +  1794024 -----TTCCGGAATT---GAGAC-----------TAATGCTT------TGTTTG-----------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0        514625 63 +  4147112 aaaagaagaggaattCC-GGTGT-----------ATAGGATCAATTCATGTTTGTttaag--attattttttttctg
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold14268    76147 171 -    96895 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=183.000000
s ce10.chrX              2037227 38 + 17718866 TAACGCTTCGAAAATACTTGTAAACTTTGC--AAAACTGG
s cb4.chrX              16892010 33 - 21540570 ------TTCAAGATTATTTT-GTGCTTTTCTGGGAAGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1336938 34 +  1794024 ------TTTGAGATTATTTTCTTGCTATTCTGAAAGCAGA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        514688 10 +  4147112 I
e caeJap4.Scaffold14268    76147 171 -    96895 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=-964.000000
s ce10.chrX              2037265 29 + 17718866 AAAGTGAA--------AAAAATG---TGAATTTCTGAAAT
s cb4.chrX              16892043 40 - 21540570 GGAATGGGTGGGGACAAGAAATATTGGAGAGTCATGAAAT
i cb4.chrX              C 0 I 81
s caeRem4.Crem_Contig15  1336972 22 +  1794024 GAAGTGAG--------AGAAATC---AGGATTC-------
i caeRem4.Crem_Contig15 C 0 I 17
s caePb3.Scfld02_0        514698 19 +  4147112 AGAGCGGA--------AGAAATA---GGAA----------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=0.000000
s ce10.chrX              2037294 83 + 17718866 TAGTTTGTGATATATTATAATTCAGTATAAAGTCTACCAACAAAACATTTTTCCTGGTTCTTCCGGTCTGCCAATCAGATAAG
e caePb3.Scfld02_0        514717  0 +  4147112 C
e caeJap4.Scaffold14268    76147 171 -    96895 I
e cb4.chrX              16892083 81 - 21540570 I
e caeSp111.Scaffold582     23151 396 -   484378 I
e caeRem4.Crem_Contig15  1336994 17 +  1794024 I

a score=-44520.000000
s ce10.chrX              2037377 440 + 17718866 CTCAGATAAGTAAGTTCTCATGTTTCATTTTTCCCAAATCCAAAAATTTGGAGAACCCAAACATGTGTAAA-TTTTGCTAATATATACCAGCGGGaaataagattccggtttaaatctataacacttt----cgttggaatatcgatttttatgaaataatgggaatttTGACAACTACCTTCATTGTCGCATTTGGCCAATTAAGCACACAATGTAAAAATATAATTAAA-------ATAAGTTTTGAGTCAGAAAAAAATTTGAAAAAAATAAAATTTTCGATTAAAAAAATCGattttaaaaaac-----tatcaaaatgcatacatacataaatctcgtattaaagcttgagagaagcgagatggggcagacacctcataaaagttgcgtcaactacgatacctg-ggttggtcaaaacttttgga--aagtgtagtcatatgaaagatcatagtt
s cb4.chrX              16892164 330 - 21540570 ttttgaaaaattaactttaatt-atcttgttttctgaa---ata----tcgaaaatatgccgactgataaaatgttggtgatat--------aaTGAATAATACTT----------------GACCAT----t---------------------------taacagaattttgatatccttca-------------------caagaactaaaaaaagaaacatagagagaaactcgaaaaaagcTTGTTTC-------GGCTTGATATGAGTAA---TATGGTCAGAAAAATTGCTCTATAAGGCTCTGAGCAatgaaaat---------catta-------ttttaATTCCGAAATTAAGGAAATCGTGAAAAAGGTATATAAGATCTG-----GTGGTAATATTTGTAATTT------ACCCTAAAC---------GATATATG--AGCCCAAAGTT
i cb4.chrX              I 81 I 62
s caeRem4.Crem_Contig15  1337011 213 +  1794024 --------------------------ATGCTTTCCAAA---AGA------GGAAGTACaataaatagtgaa---------------------aaagAGTCAGAATT----------------GACGTT----TATTGTAA------------------GGTGACAGAGTAATTATATGATTTC-------------------CACAATC-----------------------------AAATTGTTGGTTTC---------TTTTAAAAGTGGAA---TGCCTACTTAAAAA---------------Ctg---cattaaaat---------------------tttttagccAGAAACTAA----------------------------------------ATTATTTA-AATTG------ACATTGAACAGTAAAATAGAAATATG-------AAAGTT
i caeRem4.Crem_Contig15 I 17 I 6
s caePb3.Scfld02_0        514717 277 +  4147112 --------------CACAGATG-AGAATTCTTTCGGag---aagagttttgagaaaaattttaatggaGAA---TCAATGA-----------AGAAAATAGTAATC----------------TACAATGTGGTATTGAAATCTAGAATTTATCAGAGCGATTAGAGAATAAAGAACTCCTATT-------------------CAAGTTAAAAGTGAATTGCGATGATGACA-------AAACATCTGA-----------GATTTTAAACAAGAAG---TTTCGatgaaatcaacattttctaaTGACCGGAAAAATTGTAAT-------------------------------------------------------------------------------AGTATGGA-AACAA------ACACTtaga--agaagtagaaaaagG-------ATAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=329.000000
s ce10.chrX              2037817 2 + 17718866 tc
s caeRem4.Crem_Contig15  1337230 2 +  1794024 TC
i caeRem4.Crem_Contig15 I 6 I 10
s caePb3.Scfld02_0        514994 2 +  4147112 CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e cb4.chrX              16892494 62 - 21540570 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=133.000000
s ce10.chrX              2037819 30 + 17718866 aaaaaactcgatagtccacaaaaaaaagtt
s caePb3.Scfld02_0        514996 30 +  4147112 AAGTTTCTTGCTAAAGAACAAGACAAGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e cb4.chrX              16892494 62 - 21540570 I
e caeSp111.Scaffold582     23151 396 -   484378 I
e caeRem4.Crem_Contig15  1337232 10 +  1794024 I

a score=-2265.000000
s ce10.chrX              2037849 43 + 17718866 tgatttttaaaccggaacttatttACC-GACAAATAAAATTACA
s caeRem4.Crem_Contig15  1337242 27 +  1794024 TGTTTTCTGATTAGGAATCTATAAACC-----------------
i caeRem4.Crem_Contig15 I 10 I 2
s caePb3.Scfld02_0        515026 28 +  4147112 TCATGTTAAAATCAAAAGCAAGaaagat----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e cb4.chrX              16892494 62 - 21540570 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=-9879.000000
s ce10.chrX              2037892 101 + 17718866 TATTGGAAAACAGTGTACAGTGTACAATAATTTACATTAAATGGGTATTCGTCAGTTCaattatttaataa----atcgattataaatatattttaaaaataatc
s cb4.chrX              16892556  70 - 21540570 Tgttgaaaaaca-------------------------------tgaaattatCATCTTGATATTTTTAATG----ATCACAGAAAATGTTATCATATATCAAACC
i cb4.chrX              I 62 C 0
s caeRem4.Crem_Contig15  1337271  47 +  1794024 Cagtgaaaaa-------------------------------------------------gtgtttttatga----aacatggaaaa----atcTAATAAC-AATG
i caeRem4.Crem_Contig15 I 2 C 0
s caePb3.Scfld02_0        515054  45 +  4147112 -----------------------------------------------attttcaaagtgCTCCTTTCCTTACTATACcattgaaaa--------tataaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76147 171 -    96895 I
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=1352.000000
s ce10.chrX              2037993 20 + 17718866 aaataaaaGCTCTTAAAAAA
s cb4.chrX              16892626 20 - 21540570 TAATAATCACTAACAGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1337318 20 +  1794024 TAGTactttccaataaaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold14268    76318 13 -    96895 -------aaacaaaagaaaa
i caeJap4.Scaffold14268 I 171 C 0
e caePb3.Scfld02_0        515099  0 +  4147112 C
e caeSp111.Scaffold582     23151 396 -   484378 I

a score=44429.000000
s ce10.chrX              2038013 62 + 17718866 -AACAAAAATTACCAGCATCTGGGGAATCCCAACGATTACGCAAACCAATGG---TACTCATTCCC
s cb4.chrX              16892646 60 - 21540570 ------CACCCACCTGTTTCCGGAGAATCCCAACGATTACGCAAGCCAATAGGAATGCTCATTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1337338 56 +  1794024 -------acttaccaGTGTCGGGAGAATCCCAACGGTTGCGCAGGCCAATAG---TACTCATTGCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     23547 62 -   484378 -AAGAAAGTTTACCTGCATCTGGAGAATCCCAACGGTTACGCAAGCCAATGG---TGCTCATTTCC
i caeSp111.Scaffold582  I 396 C 0
s caePb3.Scfld02_0        515099 62 +  4147112 -caaaGAACCAACCTGCATCTGGGGAATCCCAACGGTTGCGCAAGCCAATAG---TACTCATTTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    76331 63 -    96895 gctaaaaaCTAACCAGTATCTGGAGAATCCCATCGACTGCGTAAAGCGTACG---TGCTCATACCC
i caeJap4.Scaffold14268 C 0 I 7

a score=9544.000000
s ce10.chrX              2038075 17 + 17718866 AATGTTGCATCGACCGT
s cb4.chrX              16892706 16 - 21540570 AATGCTGCATCGA-CGt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1337394 16 +  1794024 TATGGTGCATCGA-CGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     23609 16 -   484378 TATGGAGCATCGA-CGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        515161 16 +  4147112 TATGGAGCATCGA-CGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    76394  7 -    96895 I

a score=117709.000000
s ce10.chrX              2038092 258 + 17718866 GTGTATGCCAATAACTTTTC-CGCAAATTCAGAATTGCCAGACAGACG---TTGGGGCGTGTAC--GA--AAAAGCTGGTATAC--------GCTCGCGACTGC----------GACCACCGGCGCAAT-CAAT--CTGAGCCACCGGAAT-----------GGAGCTCATGC-TTTTGGCCGC---TAACGCCTGCGC---------GTTTATGTCGTCATACACCGGTCTCTCGCG--CCCGAATGTATGCAATGCGGCAAGGATTGTGCTTGT-GTCTCAGTGTGTGAACAGTGAAATAATATGGTTTTTT
s cb4.chrX              16892722 246 - 21540570 gtatttgaaaataattcctC---AATATTCAGAATTGGCAGACAGACG---TGTGGGCGTGtactagaaaaaaatcaag---tctcACTATTGCCGTC----GCCGCCGCAACACACAACTGGCGCAAT-CAATCCCCCAACCACCGGAAT----------GGGAGCTCATGCGCTGC-GCGGCTCGTGGAGCTTGCGC-------TCGTTCGTGTCGTCATACACCGGT--------------------TGTGGTGCGC-----------CTtgt-g--tg--tgtgtgAACAGCAAAATAATATGGTTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1337410 257 +  1794024 GTGTATGACAATAACTCTTCTCACAAATTCAGAATTGCCAGACAGACG---TTGGGGCGTGTAC---GGAAAAAGCGAG---AC--------GCCCGC----GC----------TACAACTGGCGCAAT-CAAT--CCGAGCCACCGGAAT-----------GGAGCTCATGC-TTTC-GCGGC---TGGAGCCTGCGCCTT--TTTCGTTTGTGTCGTCATACACCGGTCTCTCGGGCGCCCGAATGTATGCAAAGCGCCAGGGAT--TGCTTGT-GTCTC--TGTGTGAACAGCGAAATAATATGGTTTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     23625 247 -   484378 GTGTATGACAATAAATtgtc---aaaattcagaattggCAGACAGACGGTTTTGGGGCGTGTCG--GG--AAAAGCAAG---GC--------G-CTGC----GC----------TACAACTGGCGCAAT-CAAT--CTGAGCCACCGGAAT-----------GGAGCTCATGC-T--------C---TGAAGCCTGCGCACA--TTTTTCCTGTGTCGTCATACACCGGTCTCTCGCGC-CCCGAATGCATGCAACGCGCCAAGGAT--TGCTCGT-GTCTC--TGTGTGAACAGCGAAATAATATGGtttttt
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0        515177 258 +  4147112 GTGTATGACAATAAATCGTT----GAATTCAGAATTGCCAGACAGACGTTTTTGGGGCGTGTAC--GGAAAAAAGCAAA---GC--------GCCTGC----GC----------TACAACTGGCGCAAT-CAAT--CTGAGCCACCGGAAT-----------GGAGCTCATGC-TTTT-GCGGC---TGGAGCCTGCGCTCAATTTTTGCTCGTGTCGTCATACACCGGTCTCGTGCG--CCCGAATGTATGCAAAGCGCCAAGGAT--TGGTTGTGGGCTC--TGTGTGAACAGCGAAATAATATGGtttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    76401 198 -    96895 GTGCAtgaaaatg---cttc----aaaatcACAGT-----GCCAGACG---TT-GGGCGTGTAC---------CGTCAG---GT--------G---------GT----------TTCGACTGGTGCCGCACAAT--CCG----TCCGGAATGAGGAAAAGGGGAAGCTTGTGT------GTGCC---TGTTGC-------------TCGCCTGTGTCGTCATGCACCGGTCCGGCG----CCCG-------------------------TGCATGC-AGCT---TGTGTGAACAGCAAAAtaatatggtttttt
i caeJap4.Scaffold14268 I 7 C 0

a score=-6125.000000
s ce10.chrX              2038350 16 + 17718866 -AGCATTGCTATAGACG
s cb4.chrX              16892968  5 - 21540570 -------G-----GTCG
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15  1337667 10 +  1794024 -------GGCCCAGTCT
i caeRem4.Crem_Contig15 C 0 I 5
s caePb3.Scfld02_0        515435  6 +  4147112 -----------tGGCCT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold14268    76599 16 -    96895 ttcgaccGCTCTCGTC-
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     23872 16 -   484378 I

a score=63124.000000
s ce10.chrX              2038366  99 + 17718866 CGCTAAGCTTGATAATCGAGCCGGCTAACTGCCCGTC-GAAAATGCAAATAGCA-------GGTAAGCAAATCTGTGCCGTCAAAGGGAATGT------------TCTACTTTT--TTGTT
s cb4.chrX              16892979  94 - 21540570 TGCTAAGCTTGATAATCGAGGCGGCTAACTGGCcgtgaaaaaatgcaaatagCT-------GGTAGGCACACC--TGGGCTCGAAGA------------------ATTACTTGTTGGTGTT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig15  1337682  99 +  1794024 -GCTAAGCTTGATAATCGAGACGGTTAACTGGccgtcaaaaaatgcaaatagCT-------GGTAGGCACACC--TGCCGCCAAAGGGACTCT------------GTTTCTTACTTGTGTT
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582     23888 100 -   484378 CGCTAAGCTTGATAATCGAGACGGCTAACTGCCcgtcaaaaaatgcaaatagGA-------GGTAGGCACACC--TGCCGCCAAAGGAACTAT------------ACTTTTCTTACTTGTT
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0        515448 100 +  4147112 CGCTAAGCTTGATAATCGAGACGGCTAACTGCCcgtcaaaaaatgcaaatagCA-------GGTAGGCACACC--TGCCGCCAAAGGGACTAT------------ACTTTCTTTACTGTTT
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold14268    76615 110 -    96895 CGCTAAGCTCGCTAATCGAGCCGTCTCGTCgtc-----aaaaatgcaaataagATGCGAGCGGTGGGCGCG----AGCCGCCAAAGTGACTGTTTACATATACAAGctacttttctttt--
i caeJap4.Scaffold14268 C 0 I 283

a score=9936.000000
s ce10.chrX              2038465 11 + 17718866 GACTTTCACAT
s cb4.chrX              16893073 11 - 21540570 GACTTTCACGT
i cb4.chrX              C 0 I 451
s caeRem4.Crem_Contig15  1337781 11 +  1794024 GACTTTCACGT
i caeRem4.Crem_Contig15 C 0 I 153
s caeSp111.Scaffold582     23988 11 -   484378 GACTTTCACGT
i caeSp111.Scaffold582  C 0 I 27
s caePb3.Scfld02_0        515548 11 +  4147112 GACTTTCACGT
i caePb3.Scfld02_0      C 0 I 355
e caeJap4.Scaffold14268    76725 283 -    96895 I

a score=0.000000
s ce10.chrX              2038476 806 + 17718866  
e caePb3.Scfld02_0        515559 355 +  4147112 I
e caeJap4.Scaffold14268    76725 283 -    96895 I
e cb4.chrX              16893084 451 - 21540570 I
e caeSp111.Scaffold582     23999  27 -   484378 I
e caeRem4.Crem_Contig15  1337792 153 +  1794024 I

a score=830.000000
s ce10.chrX              2039282 88 + 17718866 AAAAAAGGTATTATTTTTCCGATATCTTGCGAATCTGTTTCCAATGAAAACGTTGTGGTTTT---CAGCGATGCAAATTCATATTTTATTT
s caeSp111.Scaffold582     24026 84 -   484378 AAAAAACCTATTAATTTTC-----TCTAGGGAACGTTTTTGTTAATGAACTGTAGTGAAGTTAATTACTGATTCCAGT--aaactttattt
i caeSp111.Scaffold582  I 27 C 0
e caePb3.Scfld02_0        515559 355 +  4147112 I
e caeJap4.Scaffold14268    76725 283 -    96895 I
e cb4.chrX              16893084 451 - 21540570 I
e caeRem4.Crem_Contig15  1337792 153 +  1794024 I

a score=-1809.000000
s ce10.chrX              2039370 51 + 17718866 -----TTTAAAAAACTCTTCAATCTAAAAATAGGATGAAACATTTTATTCAGTTGT
s cb4.chrX              16893535 35 - 21540570 -----tttaaaaaattattta----ttaaataaaaaaaatcagt------------
i cb4.chrX              I 451 C 0
s caeSp111.Scaffold582     24110 32 -   484378 tgaaattaaaaaaaacg---------gaaataatAAAACAT---------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        515559 355 +  4147112 I
e caeJap4.Scaffold14268    76725 283 -    96895 I
e caeRem4.Crem_Contig15  1337792 153 +  1794024 I

a score=12526.000000
s ce10.chrX              2039421 105 + 17718866 TAAGCTCATTTGGTAACGTTTTGTGACACTGAAA--AACAAACACGAGCTCGGAGATGTGAGAA---AACCGG------TGACAAATTGCAATAA--GTAAAATACACTTGACTGAAA
s cb4.chrX              16893570  87 - 21540570 taagCTC-----------AATCC-------------ATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTC----TGACAA--TGCAGTAAAGTTAAATTAAGCTCGGTAAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1337945 109 +  1794024 TAAGCTCT-TTAGACAATAATTCTGACACAGAAAATAAGGAACACGAGCTTTGAGATGTTTGGGTGAAACCGGTC----TGACAA--TGCAGTAAAAGT-AATTAAGCTCGGTGAat-
i caeRem4.Crem_Contig15 I 153 C 0
s caeSp111.Scaffold582     24142 104 -   484378 -AAGCTCATTTGTTTGAAAGTTCTGACACAG------AAGGAAACGAGCTCCGAGATGTGGAATTG-AACCGGTTGTTTTCTCAAG-TATTATAA-----TTTTAAGCTCggttgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        515914 103 +  4147112 TAAGCTCA-TTGGACAAAAATTCTGACACAGA----AAAGAACACGAGCTCCGAGATGTTTAACAA-AACCGGTTGACATATTAA--TGTTATAA-------TTAagctcgattgaaa
i caePb3.Scfld02_0      I 355 I 56
e caeJap4.Scaffold14268    76725 283 -    96895 I

a score=-5648.000000
s ce10.chrX              2039526 52 + 17718866 --TGATACAACTTGA-AAGATCTATTCTTAGAAAAAGTTCAAGATGCTTATAACC----------
s cb4.chrX              16893657 39 - 21540570 -AAATAAAAAGGTT--AAGATCCT----GAGAacaa--tca-------gaaaaac----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1338054 47 +  1794024 -tgaaaacaacatttcaaGATCTCTGGGGAAGacaa--acaat-----gaaaaat----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     24246 56 -   484378 tgaaaaacaatgttt-taGATCGA----TTGGACAA--TCAAGAGA--GGAAAATGAGTATAGTG
i caeSp111.Scaffold582  C 0 I 3
e caePb3.Scfld02_0        516017 56 +  4147112 I
e caeJap4.Scaffold14268    76725 283 -    96895 I

a score=519.000000
s ce10.chrX              2039578 28 + 17718866 ------------AAATGAATGACAT--AAACCCGTT-TTCATC
s cb4.chrX              16893696 38 - 21540570 aaagtGGCTAGGACATGGGGAAGAATTGAACCCGTAGG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1338101 41 +  1794024 gaataaataaagaaatggGAGTGAA--AGACCCGTAGAACAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     24305 29 -   484378 ------------aaatcggagaaaa--tAACCCGTCATTTAGT
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0        516073 29 +  4147112 ------------AAATGGGAGAGAA--TCACCCGTtaattgat
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold14268    76725 283 -    96895 I

a score=13964.000000
s ce10.chrX              2039606 55 + 17718866 AGA-------AAATAAATAGAGCTCTGTG----------AAGGAAAGTGAGGCAAAAATGTAAGAAGACCCG
s cb4.chrX              16893734 60 - 21540570 -GT-------ACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGG----ACCCG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15  1338142 55 +  1794024 TAT-------AAATTAATAGAGTTCTGAGA---------AATGAAGTTGTGGCAAAAATAGGAAGT-ACCCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     24334 57 -   484378 TAAG------AAATAGATAGAGTTCTGAGAA--------ATATTCAAGGTGgcaaaaacatcaaaa-acccG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        516102 59 +  4147112 tca-------aaataaatatagTTCTGAGAAAG------AGATGAATGGTGGCAAAAACGTGGGGACACCCG
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold14268    77008 57 -    96895 ---agaaatgaAATAGA-AGAGTTATGG-----------TAAGAAATTGTGGCAAAGATGCTAGAAAACCCG
i caeJap4.Scaffold14268 I 283 C 0

a score=-1344.000000
s ce10.chrX              2039661 20 + 17718866 AGTTGACATGAGAGACGCTA
s cb4.chrX              16893795 18 - 21540570 AAAAGAAATGAGAGTCAA--
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig15  1338197 20 +  1794024 AAAGGAAATTGgagcaaaaa
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582     24391 19 -   484378 -CTGTGAGTAGGTGTCATTA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    77065 19 -    96895 -ATGCAAAGTAGAATCAATT
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        516161  8 +  4147112 I

a score=895176.000000
s ce10.chrX              2039681 1153 + 17718866  
s cb4.chrX              16893814 1138 - 21540570  
i cb4.chrX              I 1 I 9
s caeRem4.Crem_Contig15  1338222 1132 +  1794024  
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582     24410 1122 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        516169 1142 +  4147112  
i caePb3.Scfld02_0      I 8 I 12
s caeJap4.Scaffold14268    77084 1162 -    96895  
i caeJap4.Scaffold14268 C 0 C 0

a score=-1028.000000
s ce10.chrX              2040834 55 + 17718866 ATGTTACGATTTTGAAGGGgatagctcagtgggtagtagtggccgctagcaatgt
s caeJap4.Scaffold14268    78246 11 -    96895 ATGTTTTG--------------------------------------------TGT
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        517311 12 +  4147112 I
e cb4.chrX              16894952  9 - 21540570 I
e caeSp111.Scaffold582     25532  0 -   484378 C
e caeRem4.Crem_Contig15  1339354  0 +  1794024 C

a score=-1524.000000
s ce10.chrX              2040889 64 + 17718866 ggaggtcaagagttcaagtccggcctcgccgagccttaactgggaaatggaggtaatccacggc
s cb4.chrX              16894961  9 - 21540570 ------------------TCCGGTGTC-------------------------------------
i cb4.chrX              I 9 C 0
e caePb3.Scfld02_0        517311 12 +  4147112 I
e caeJap4.Scaffold14268    78257  0 -    96895 C
e caeSp111.Scaffold582     25532  0 -   484378 C
e caeRem4.Crem_Contig15  1339354  0 +  1794024 C

a score=95.000000
s ce10.chrX              2040953 8 + 17718866 agaattat
s caeRem4.Crem_Contig15  1339354 6 +  1794024 agaatt--
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        517311 12 +  4147112 I
e caeJap4.Scaffold14268    78257 0 -    96895 C
e cb4.chrX              16894970 0 - 21540570 C
e caeSp111.Scaffold582     25532 0 -   484378 C

a score=0.000000
s ce10.chrX              2040961 3 + 17718866 ttg
e caePb3.Scfld02_0        517311 12 +  4147112 I
e caeJap4.Scaffold14268    78257 0 -    96895 C
e cb4.chrX              16894970 0 - 21540570 C
e caeSp111.Scaffold582     25532 0 -   484378 C
e caeRem4.Crem_Contig15  1339360 0 +  1794024 C

a score=-7409.000000
s ce10.chrX              2040964 38 + 17718866 gccacaAAGCGCTTCCGTCCTTCAATCCTTCAACTTTA
s cb4.chrX              16894970  1 - 21540570 -------------------------------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1339360 22 +  1794024 t-cacAA----CTTCCGTCAC-----------AAGTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     25532 23 -   484378 GACGCAA----CTTCCGTAAC-----------TTGTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        517323 14 +  4147112 --CATAA----GTTCC------------------GTCA
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold14268    78257  0 -    96895 C

a score=208093.000000
s ce10.chrX              2041002 167 + 17718866 CTTACTCTCGCTTATTTCCATTTCGTTCTGATACCATCGAATCTCAGGCAACGGGTTTCCTTGCGCCGGACAGCGCAACTCAAGTTTCCCTCCCGTGTTGATCTTGATAGGCGATCTCCATTCCGAGTTCATGTCAATCAACCAACTTGGACTGGCCGCTGCAACAA
s cb4.chrX              16894971 167 - 21540570 CTCACTCTCGCTAATTTCCATCTCGTTCTGATACCATCGAATTTCGGGCAATGGGTTTCCTTGGGCCGGACAACGCAACTCGAGTTTGCCTCCCGTGTTGATCTTGATAGGCGATCGCCATTCGGAGTTCATGTCAATCAACCAACTTGGGCTGGCGGCTGCAAGAA
i cb4.chrX              C 0 I 846
s caeRem4.Crem_Contig15  1339382 167 +  1794024 CTCACTCTCACTTATTTCCATCTCATTCTGATACCATCGAATCTCAGGCAATGGGTTTCCTTGGGCCGGACAACGCAACTCAAGTTTTCCTCCCGTGTTGATCTTGATAGGGGATCGCCATTCGGAGTTCATGTCAATCAACCAACTTGGGCTGGCCGCTGCAAAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     25555 167 -   484378 CTTACTCTCGCTTATTTCCATCTCGTTCTGATACCATCGAATCTCCGGCAATGGGTTTCCTTGGGCCGGACAGCGTAACTCAAGTTTTCCTCCCGTGTTGATCTTGATAGGGGATCGCCATTCGGAGTTCATGTCAATCAACCAACTTGGACTGGCCGctgcaaaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        517337 167 +  4147112 CTCACTCTCGCTAATTTCCATCTCATTCTGATACCATCTGATCTCAGGCAATGGGTTTCCTTGGGCAGGACAACGCAACTCAAGTTTTCCTCCCGTGTTGATCTTGATAGGAGATCGCCATTCGGAGTTCATGTCAATCAACCAACTTGGACTGGCCGCTGCAAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    78257 167 -    96895 CTTACTCTCGCTTATTTCCAACTCGTTCTGATACCATCGAATCTCCGGCAGTGGGTTTCCTTGGGCTGGACAACGCAACTCTAGTTTTCCCCCGGTGTTGATCTTGATAGGAGATCGCCATTCCGAGTTCATGTCAATCAACCAACTTGGACTTGccgctgcaaaaa
i caeJap4.Scaffold14268 C 0 C 0

a score=-18314.000000
s ce10.chrX              2041169  96 + 17718866 ---TGGAATTGGTTTTA----------------------AACAATTTTGAAAGTAAGACTACGTACACTAAATCTAATTTAA------ACTCAAAATTCAAAATCCAAAAACAATTTTGAAAAAATT
s caeRem4.Crem_Contig15  1339549  86 +  1794024 ---GTTTACTGGTTTTGCAAGtaaatgt-----------gaatttttaaagGGAAAAACTATTC------------------------TGTTGAATTT--AAATCCAAGCA-GATCACTGAATAATT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     25722  54 -   484378 ---tgaaactagTTTT-----------------------AGTTCGGTCAAAAGT----------------------------------TGTTAAACT--------AAAGCA-----ACAAAAGAATT
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0        517504 115 +  4147112 ---TGGAACTGGTTTTGCAACAAAATACAAAGCGAAGAGAggtttgttgaaaatgaaaccgtgaatttt--atgaaattcgaaGTTCCTATTAAAATT--Gatgcaaaaga-----aagaaagaatt
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold14268    78424  36 -    96895 aaattgaacaggTTTTGCTAG------------------GTTTCTTTTGAAACA-------------------------------------------------------------------------
i caeJap4.Scaffold14268 C 0 C 0
e cb4.chrX              16895138 846 - 21540570 I

a score=391001.000000
s ce10.chrX              2041265 527 + 17718866  
s cb4.chrX              16895984 481 - 21540570  
i cb4.chrX              I 846 I 4
s caeRem4.Crem_Contig15  1339636 514 +  1794024  
i caeRem4.Crem_Contig15 I 1 I 4
s caeSp111.Scaffold582     25783 548 -   484378  
i caeSp111.Scaffold582  I 7 I 75
s caePb3.Scfld02_0        517651 543 +  4147112  
i caePb3.Scfld02_0      I 32 I 4
s caeJap4.Scaffold14268    78460 604 -    96895  
i caeJap4.Scaffold14268 C 0 C 0

a score=1092.000000
s ce10.chrX              2041792 2 + 17718866 AT
s cb4.chrX              16896469 2 - 21540570 AT
i cb4.chrX              I 4 I 68
s caeRem4.Crem_Contig15  1340154 2 +  1794024 AT
i caeRem4.Crem_Contig15 I 4 I 81
s caePb3.Scfld02_0        518198 2 +  4147112 AT
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold14268    79064 0 -    96895 C
e caeSp111.Scaffold582     26331 75 -   484378 I

a score=91.000000
s ce10.chrX              2041794 1 + 17718866 A
s caePb3.Scfld02_0        518200 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 90
e caeJap4.Scaffold14268    79064 0 -    96895 C
e cb4.chrX              16896471 68 - 21540570 I
e caeSp111.Scaffold582     26331 75 -   484378 I
e caeRem4.Crem_Contig15  1340156 81 +  1794024 I

a score=0.000000
s ce10.chrX              2041795 739 + 17718866  
e caePb3.Scfld02_0        518201  90 +  4147112 I
e caeJap4.Scaffold14268    79064   0 -    96895 C
e cb4.chrX              16896471  68 - 21540570 I
e caeSp111.Scaffold582     26331  75 -   484378 I
e caeRem4.Crem_Contig15  1340156  81 +  1794024 I

a score=261.000000
s ce10.chrX              2042534 29 + 17718866 ATAAGGTGAATCTTTTCAACCTTTCTCTT
s caeJap4.Scaffold14268    79064 18 -    96895 ATAAGATGGAAGTTTTC-----------T
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        518201 90 +  4147112 I
e cb4.chrX              16896471 68 - 21540570 I
e caeSp111.Scaffold582     26331 75 -   484378 I
e caeRem4.Crem_Contig15  1340156 81 +  1794024 I

a score=389685.000000
s ce10.chrX              2042563 1004 + 17718866  
s cb4.chrX              16896539 1062 - 21540570  
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig15  1340237 1118 +  1794024  
i caeRem4.Crem_Contig15 I 81 C 0
s caeSp111.Scaffold582     26406 1095 -   484378  
i caeSp111.Scaffold582  I 75 C 0
s caePb3.Scfld02_0        518291 1054 +  4147112  
i caePb3.Scfld02_0      I 90 C 0
s caeJap4.Scaffold14268    79082 1132 -    96895  
i caeJap4.Scaffold14268 C 0 I 315

a score=40169.000000
s ce10.chrX              2043567 139 + 17718866 CGGAATTCTAATGAAGATCCCTTCCGGGAAATGACCGGAAACACCAAGCCCCTCTGTTTCTTCTTTTTCTTCTATTCT-----TA-------------GAGTGTTGGAAAATTGAGAAGAATCG--GTGGGCACTAATCGGATCGAGAAGAAA-TCCTGT
s cb4.chrX              16897601 109 - 21540570 CGGAATGCTAATGAAGATTC-TCCC-----TCTTCCGGAAACGCGTCGAGATCT----------------TCTATTCTGAGAATAAGACGAAGTTGA---------AAAGATTGAGATGAATCGGTGTTAATACTAATCG--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1341355 132 +  1794024 TGGAATGCTAATGAAGA----TCCCGAAAATCGACCGGAAACACTAAACCCCTC----------------TCTTTTCT-----TAAGACTAAATCAAGGACTGGTGGAAGATTGAGATGGATCG--GTTGATACTAATCGgatgaatttcaaa-tcttgt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     27501 135 -   484378 TGGAATGCTAATGAAGAGTC-TTCCGAA--ATGACCGGAAACACTAAacctcctc---------------tcttttct-----taaGACTAAATCAAGGAATAGTGGAAGATTGAGATGAATCG--GTTGATACTAATCGGATGAATAAGAAATTCCTgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        519345 142 +  4147112 TGGAATGCTAATGAAGATTC---CCGGA--ATGACCGGAAACACTAATCCCCCTTTCTTTTCATAGGACATCTTTTCT-----TAGAACTGAATCAAGGA-----GGAAGATTGAGATAAATCG--GTTGATACTAATCGGATGAATATTAAA-TCCTGT
i caePb3.Scfld02_0      C 0 I 142
e caeJap4.Scaffold14268    80214 315 -    96895 I

a score=-780.000000
s ce10.chrX              2043706 14 + 17718866 CTAGATATGGAAAA------
s caeRem4.Crem_Contig15  1341487 13 +  1794024 -TATACGCAGAAAA------
i caeRem4.Crem_Contig15 C 0 I 97
s caeSp111.Scaffold582     27636 15 -   484378 -----ctgagaaaaagagac
i caeSp111.Scaffold582  C 0 I 92
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e cb4.chrX              16897710  0 - 21540570 C

a score=0.000000
s ce10.chrX              2043720 5 + 17718866 TTTTG
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e cb4.chrX              16897710 0 - 21540570 C
e caeSp111.Scaffold582     27651 92 -   484378 I
e caeRem4.Crem_Contig15  1341500 97 +  1794024 I

a score=-2758.000000
s ce10.chrX              2043725 556 + 17718866  
s cb4.chrX              16897710 370 - 21540570  
i cb4.chrX              C 0 I 103
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e caeSp111.Scaffold582     27651  92 -   484378 I
e caeRem4.Crem_Contig15  1341500  97 +  1794024 I

a score=0.000000
s ce10.chrX              2044281 168 + 17718866 ttggaaaaagttgtaaaagatttcaaatagtgcctgaactgtgccgcttgccaaaaaacttttaatggcactttttcggcaacaggaaattttcaggcactctctgaagtattccaaaatttttcgacaaacaaatataattttctgatacatagatcaaatttgtct
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e cb4.chrX              16898080 103 - 21540570 I
e caeSp111.Scaffold582     27651  92 -   484378 I
e caeRem4.Crem_Contig15  1341500  97 +  1794024 I

a score=-1150.000000
s ce10.chrX              2044449 232 + 17718866 atacattttaatatcaattttgaatttaaaaaagttggattttcatattgaagtaagctattgtgtacttttaccaaaaCAAATTGCCGCACAGCCCTGATGTGAATTACGATTAGTTAACCCTAATGAATAAATAAAAGATTTAATTTCAAACTTTTGGACTTTTATACAAAATATCCTATTTGTGTTCTATCTTTGCTGATTTTTAACTAATTCTTTTACGATTAATTCT
s cb4.chrX              16898183 156 - 21540570 gtgcactttgagctcaatt----atctcaa-----------tttctgttgGAGA-----------------TATAAAAGC--------------------TGCAAACTATG--TAAATGTCACTGataatgagataa----ttgaaactgagataattg-------------aagcCCCTA-----ATTCACTACTTGCTTGTCCCTACTTCGCTTCTCTATGCTTAAGACT
i cb4.chrX              I 103 C 0
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e caeSp111.Scaffold582     27651  92 -   484378 I
e caeRem4.Crem_Contig15  1341500  97 +  1794024 I

a score=-480.000000
s ce10.chrX              2044681 9 + 17718866 TTTCTCACA
s cb4.chrX              16898339 5 - 21540570 ----CGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1341597 9 +  1794024 TTTGTGATG
i caeRem4.Crem_Contig15 I 97 C 0
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I
e caeSp111.Scaffold582     27651 92 -   484378 I

a score=184.000000
s ce10.chrX              2044690 10 + 17718866 CTACTTTCCA
s cb4.chrX              16898344 10 - 21540570 CTCaagaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1341606 10 +  1794024 CTTTTCTTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     27743 10 -   484378 ctcttcttcc
i caeSp111.Scaffold582  I 92 C 0
e caePb3.Scfld02_0        519487 142 +  4147112 I
e caeJap4.Scaffold14268    80214 315 -    96895 I

a score=-1172.000000
s ce10.chrX              2044700 6 + 17718866 CAAGC---A
s cb4.chrX              16898354 9 - 21540570 taaaatttc
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15  1341616 6 +  1794024 CGAAA---C
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     27753 6 -   484378 caaac---c
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    80529 6 -    96895 CATAC---A
i caeJap4.Scaffold14268 I 315 C 0
e caePb3.Scfld02_0        519487 142 +  4147112 I

a score=83320.000000
s ce10.chrX              2044706 188 + 17718866 AATTGCCAATTAT-----CATTAATTTTCGCAAATCTTTTAATAATATTCG-TCCCGTCTGCCATCCTCACA--------CGTGC----TCCAAAGCCCCGC-AAATGCACTTAAACGAACGAATCGTGTGCTC--GTTCTTA--------------------CTTGATTCAAATTTGTAATTAAGTGTCGTCG----TTGCGATGAATACAACAGACGGAGAAGAGCGTCTA
s cb4.chrX              16898364 195 - 21540570 aatttccaattag------aAACCGC--CGCAAATCTTTTAATAATATTC-------TCTGCCATTCACACA---AAACCCATCCGCCGACGACA-CACGTA-GAACGCACTT-AACCAATTAACCGTGTGCTCCTGCTGCTGCTGCTCCGCGTCCCCCTTTTCTTGATTCAAATTTGTAATTAAGTGG---------GGATGAATACAACGACAGAAGGGGGAA--------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15  1341623 192 +  1794024 AATTGCCAATTAG------AAGAAGCCGCGCAAATCTTTTAATAATATTCTGTCGCGTCTGCCATTCACACACCCAAACCTATAT----ACAAAA-CGCGGC-ACACGCACTT-AGCGAATTAACCGTGTGCTCGTGTTCCTA--------------------CTTGATTCAAATTTGTAATTAAGTGTCGTC-----GAAAGAATAAAACGACAGACGGAGGGAAA---CGA
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582     27759 182 -   484378 attttccaatta----------GAGCCGCGCAAATCTTTTAATAACATTCG-AGGCTCCTGCCATTCACACG--------CGTTT----TGAAAAGCGCGGC-ACACGCACTC-AACGAATTAACCGTGTGCTC--GTTCCTA--------------------CTTGATTCAAATTTGTAATTAAGTGTCGTCtgggaagaggaagaacaCGACAGAC----GGCCAAGTAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        519629 182 +  4147112 AATTTCCAATTAG------ACGGAGCCGCGCAAATCTTTTAATAATTCTCGAAGACGTCTGCCATTCacaaa--------agtgt----tcaaaa-cgCCGC-ACACGCACTT-AACGAATTAACCGTGTGCTC--GTTCCTA--------------------CTTGATTCAAATTTGTAATTAAGTGTCTTTC--------AAAGAAAACGACAGACGGAGGGAAAAGGAGA
i caePb3.Scfld02_0      I 142 C 0
s caeJap4.Scaffold14268    80535 169 -    96895 AATTGGCAATTAGCGGGACGAAGCGTCCCGCAAATCTGTTAATAATATTCG-GCACGTCTGTCACCCACACA----------TGG----AGGAGA-CGCCGCTTCACGCACTT-AACGAATTAACCGTGTGCTC--GTCCTTA--------------------CTTGGTTTGAATTTGTAATTAAGTGC---------AGACGGACAAGGGGGAAGA----------------
i caeJap4.Scaffold14268 C 0 I 19

a score=-8535.000000
s ce10.chrX              2044894 29 + 17718866 GTCTT-------------------------CCATT-----------TCCTTTTGCTGTT---GTGCTC
s cb4.chrX              16898559 46 - 21540570 ---------------------CTGCTTCTAAGAATTCAAGTATGGGGCTTCCGTCTGTTCTGTGGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1341815 51 +  1794024 ATCTT---gctcttcctttttccctttttacaAAT-----------GTTCCCTTCTGTTT--CCATT-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     27941 49 -   484378 ATCTT--ggctcttc--ttttcatttccattcatt-----------cagttttcttgtt---ttact-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        519811 53 +  4147112 ATCTTCATGCTCTTccttttctattattttccaTT-----------ATGTCCCTCTGTT---TTACT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    80704 19 -    96895 I

a score=653227.000000
s ce10.chrX              2044923 1691 + 17718866  
s cb4.chrX              16898605 1730 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1341866 1670 +  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     27990 1637 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        519864 1657 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    80723 1620 -    96895  
i caeJap4.Scaffold14268 I 19 I 151

a score=22198.000000
s ce10.chrX              2046614 49 + 17718866 AAACAGGTGGTTT--------------TTAGTTAGGAAGGTGGACAATGAGGTGTTAATAAAA
s cb4.chrX              16900335 62 - 21540570 AAACAGGTGGTCCCACTGTTT-CCAAATTGACTCTAATCTTAGACAATGAGGTGTTAGCATAA
i cb4.chrX              C 0 I 939
s caeRem4.Crem_Contig15  1343536 59 +  1794024 AAACAGGTGGTCCCTTCAGT----AAATTGACTCTAATCGTAGACAATGAGGTGTTACCATAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     29627 63 -   484378 AAACAGGTGGTCTTCCATTCTACAAAATTGATTCTAATCCAGTACAATGAGGTGTTACCATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521521 59 +  4147112 AAACAGGTGGTCCATCAC----CAAAATTGACTTTAATCTACTACAATGAGGTGTTACCATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I

a score=207.000000
s ce10.chrX              2046663 1 + 17718866 A
s caeRem4.Crem_Contig15  1343595 1 +  1794024 G
i caeRem4.Crem_Contig15 C 0 I 34
s caeSp111.Scaffold582     29690 1 -   484378 G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521580 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I

a score=-2440.000000
s ce10.chrX              2046664 64 + 17718866 AATGTGCCGAATTTAATCTCAATTCGTATTCTACCTCCTGCCAATATTTTAACAGATTTAACAA
s caeSp111.Scaffold582     29691 19 -   484378 ----TCATGGATCTAA-----------------------------------------TTAATAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521581 12 +  4147112 -----------TCTAG-----------------------------------------TTAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I
e caeRem4.Crem_Contig15  1343596 34 +  1794024 I

a score=-19385.000000
s ce10.chrX              2046728 195 + 17718866 AATATGCATAGT----TTTATATTGGGAATT-TCCAGGTGATAT-------------------TAGAAAAAATTTATACACATTTTAGTTTAAGAAATATTTCGTTTGAAGGTGAAGAAAACTGCTTAGAACTGGTGCCAAAATGTCAAAATATCATAGTGAAT-----------------TCTTCCaaaaa--aaatttggaaattacgatttttatactttaatttttgttaaatt
s caeRem4.Crem_Contig15  1343630 138 +  1794024 AATCTACATTTAGTCTTCTCTGATGGGT----GTCACCGGTTTT-------------------TGTAAAATCT--------------------------TTTTATT---GTAATAAAGAATCAG---------AGTAATATTAT-----------TCTTTTAAT--------CAAGCGGTGTCATTTTGGAATCAAATGAAg--------------------tagtttttgacaagtt
i caeRem4.Crem_Contig15 I 34 I 70
s caeSp111.Scaffold582     29710 120 -   484378 ----------------TAGTTGATGGGTTAA-ACCATATGCCTT---TTGTC-----------TATATCAAAT--------------------------TATTGtttgaatctgaagaaa-----------------------------------acatttggGAAAAGCGAAAATCTCcgttttcccgaaa--aaattc------------------------atttttgttaaGAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521593 157 +  4147112 ----------------GGTATGATGAGAAAATCCCATGTGCCTTCACCTGTCACGTTAGCCATTAGAAGACAC--------------------------ATTTGTTCATATAGTAAGGAATAGG---------GGTGTTAAGATCATGTATTTTCACACTTGGTACTTAataaaaac--------cctgaaa--aaatccca--------------------aaattttttgtgaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I

a score=-997.000000
s ce10.chrX              2046923 1 + 17718866 a-
s caeSp111.Scaffold582     29830 1 -   484378 A-
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0        521750 2 +  4147112 cc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I
e caeRem4.Crem_Contig15  1343768 70 +  1794024 I

a score=-840.000000
s ce10.chrX              2046924 54 + 17718866 tttttgtttaaacattttcagtgtcgcgacatttctctgggtttacttaaaatc
s caePb3.Scfld02_0        521752 15 +  4147112 tctttgtttg-------------------------------------taaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I
e caeSp111.Scaffold582     29831 37 -   484378 I
e caeRem4.Crem_Contig15  1343768 70 +  1794024 I

a score=-4342.000000
s ce10.chrX              2046978 66 + 17718866 tcatattttttgaaaacttggcaccttgccaaaactttgacTTTTGAAGTGTTTTATTATGTCATT
s caeSp111.Scaffold582     29868 36 -   484378 TCTGAACTTTTGGAGACTTGACATCATGC------------------------TCACTA------T
i caeSp111.Scaffold582  I 37 C 0
s caePb3.Scfld02_0        521767  2 +  4147112 -------------aG---------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I
e caeRem4.Crem_Contig15  1343768 70 +  1794024 I

a score=-1805.000000
s ce10.chrX              2047044 82 + 17718866 TGGTGTATTCAGGCAAAATCCTCACTGGCGCTATTCCCTGTTAATGAGCTAGTTAACAATATTAA--GGCCAGTGCCAGTGC--TG
s caeRem4.Crem_Contig15  1343838 47 +  1794024 TAGTGTAT------------------------------TTCTAGTCAACTAGCTAATAATGTTGA--G---GAGGTCAGTCT----
i caeRem4.Crem_Contig15 I 70 C 0
s caeSp111.Scaffold582     29904 52 -   484378 --CTGTATG-----------------------------TTCCAGTAAACTAGTTAATCGTATTGACCG---GGAGTGAATGAACtg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521769 54 +  4147112 ---TGCAAG-----------------------------GTGAAGCCAACTAGTTAACCGTGCTGACCGGATGGGGGAGATGCATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e cb4.chrX              16900397 939 - 21540570 I

a score=180.000000
s ce10.chrX              2047126 1 + 17718866 A
s cb4.chrX              16901336 1 - 21540570 A
i cb4.chrX              I 939 C 0
s caeSp111.Scaffold582     29956 1 -   484378 g
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521823 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    82343 151 -    96895 I
e caeRem4.Crem_Contig15  1343885 0 +  1794024 C

a score=62309.000000
s ce10.chrX              2047127 67 + 17718866 AG---------AAGACATATGTTAACAAAACTATAATCCAAATAGACAACTTAAGCCAATATGTAAATACA-----AATAC
s cb4.chrX              16901337 62 - 21540570 AG---------AGGACACATGTTAACAAAACTGTAATCCAAATAGACAACTTAAGCCGACGTGTAAATACG----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1343885 60 +  1794024 -G---------AAGACACATGTTAACAAAACTGTAATCCAAATAGACAACTTAAGCCGACGTGTAAATAC-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     29957 71 -   484378 agaaagaaggaaagacACATGTTAACAAAACTGTAATCCAAATAGACAACTTAAGCCGACGTGTAAATACA----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521824 67 +  4147112 AG---------AAGACACATGTTAACAAAACTGTAATCCAAATAGACAACTTAAGCCGACGTGTAAATATAGCCAC-----
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold14268    82494 65 -    96895 -----------AGAAGACATGTTAACAAAACTGTTATCCAAATAGACATCTTAAGCCGACAAGTAAATACTGTCAC-----
i caeJap4.Scaffold14268 I 151 C 0

a score=-871.000000
s ce10.chrX              2047194 10 + 17718866 --GACCACTGTG
s cb4.chrX              16901399  9 - 21540570 --AGCCACTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1343945 10 +  1794024 --AGCCACCGTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     30028  9 -   484378 ---GCCACTGTG
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold14268    82559 10 -    96895 AGAAGCAGTA--
i caeJap4.Scaffold14268 C 0 I 16
e caePb3.Scfld02_0        521891 20 +  4147112 I

a score=-3755.000000
s ce10.chrX              2047204  9 + 17718866 CTTCTGACT--------
s cb4.chrX              16901408  1 - 21540570 ----------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1343955 17 +  1794024 GTGTAGAGGGAGTAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     30037 14 -   484378 GTGAAGAGAGGGAA---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0        521891 20 +  4147112 I
e caeJap4.Scaffold14268    82569 16 -    96895 I

a score=476.000000
s ce10.chrX              2047213 2 + 17718866 AT
s cb4.chrX              16901409 2 - 21540570 GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1343972 2 +  1794024 AA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     30051 2 -   484378 AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        521911 2 +  4147112 AA
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold14268    82569 16 -    96895 I

a score=144047.000000
s ce10.chrX              2047215 277 + 17718866 GTAAGCAGGCTCG-----ATAC-------ACATGGCAATATTAATAAGAGGAA------GTTCATACAGTTGTTTATAGGA---------TAACGCTTCGAGC--ATACAGGGTGTTTTG--CAGAATGCGAAAAATGAAGATATA-------------GATGAAAGTGGCAAGATAAT-------CC-GGAAATTCA------GTGTGATCATTCAAAAACTCAATGTGCTCAATCATTCAC-AAC----TGACAGCTTGAGGTTGTAACATTATTGATGA----CTTGACTCCTTTTTATTTTTGCGTGTTTTTGC-----GTGTAGATTATTTA-ATAGGTG--------TATTT
s cb4.chrX              16901411 272 - 21540570 GTGAGCAAGCAA--------A--------GAGAAGGAATACCAATAAGGAGACGGA---CCAAA---------------------------GAGACAttcaggaaaaataaaatgttgcga-aaaaaaacagcaaaagaAGATATATA-----------GATGAAAGTGTCAAGATAATTTTCTCGCC-GGAAATTCAGTGTATGTGTGatcattcaaaaactcaacgTGCTCAATCATTCACAAAA----TGACAGCTTGAGGTTGTAACATTATTGATGGgctttttctcccctttttctttttgcatgTGT--AT-----GTATTTGAGTTTTC----------------AAGCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15  1343974 288 +  1794024 GTGAGCAAGCAAT-----ATA--------CCAAGACAATACCAATAAGGATATAGAGATGTAAATACAGTTGTTTATAAGAGGAT-----GGAAGCTTCATAGAAATACAGGGTGTTTAGagggaaaaacggaaaaagaagatatagAA--------GCGATGAAAGTGTCAAGATAAT-------CC-GGAAATTCA------GTGtgatcattcaaaaactcaatgtGCTCAATCATTCAC-AAA----TGACAGCTTGAGGTTGTAACATTATTGATGg----ctcttctcctttttatttttgcgtGTTTTCAT-----TTGTCTGGTGTTGC----------------AAATT
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582     30053 304 -   484378 GTAAGCAAAGAAG-----ATACCCAAG--GAAAGAGAATACTAATAAGGAGATATAGATGTACATACAGTTGTTTATAAGAGGATCACGCTGAAGCTGAAGATGAGTACAGGGTGttggg--aagaaaaacgaaaaagaagatatagAA--------GCGATGAAAGTGTCAAGATAAT-------CC-GGAAATTCA------GTgtgatcattcaaaaactcaatgtGCTCAATCATTCAC-AAA----TGACAGCTTGAGGTTGTAACATTATTGATGG----CCTTTTCCC-TTTTATTTTTGCGTGTTTTCTC-----TTGTCAATTGTTGCAATTAGCA--------AATTT
i caeSp111.Scaffold582  C 0 I 57
s caePb3.Scfld02_0        521913 313 +  4147112 GTAAGCAAGCAAGGAAAAATACCCACATCGAAAGACAATACCAATAAGGAGATATAGATGTACATACAGTTGTTTATAAGAGGATCACACTGAAGCTAAGAAC--ATACA-----TTTgt--ggaaaaacggaaaaagaagatatagGA--------GCGATGAAAGTGTCAAGATAAT-------CC-GGAAATTCA------GTGtgatcattcaaaaactcaatgtGCTCAATCATTCAC-AAA----TGACAGCTTGAGGTTGTAACATTATTGATGG----cttcttccctttttatttttgcgtGTTTCCAT-----TTGTCTACTGTTGCTTTTGCTAATTGCTTGAATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    82585 288 -    96895 ----GCAAGCAAAG----ATA--------ATGCATTTGTACGTATAAGGATAAAT----GTATATACAGTT-TATGCaagaaact-----agaag---aagaagaataaaaaat--------caagaaaaagagggggaagatatgggaagaaagtgacaataaaagcgtgaagaaaaT-------CCGGGAAATTCA------GAGTGATCATTCAAAAACTCAATGTGCTCAATCATTCAC-AAATGCTTGACAGCTTGAGGTTGTAACATTATAGATGA----TTTTCCCTC-----atttttgtgtgttttcaCCCCCACTTTCCACCACTAA--TTGCCG--------TGCTT
i caeJap4.Scaffold14268 I 16 C 0

a score=-11625.000000
s ce10.chrX              2047492 39 + 17718866 ATATGAATTAATTTA-------TTCTACAAACATTTTGAATTTCTG
s cb4.chrX              16901684 11 - 21540570 --------------------------------ATCTCGGATTT---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15  1344271 36 +  1794024 ACACACATATTATCA-------TAACAT---CCTCTCTAGTTTCCG
i caeRem4.Crem_Contig15 I 9 I 58
s caePb3.Scfld02_0        522226 32 +  4147112 ----Ccataatttca-------tttcat---ttcacttAATTTCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    82873 32 -    96895 ---TCAACGACCTCCCTCACATTTGCAC---TCTCTTT--------
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     30357 57 -   484378 I

a score=-47.000000
s ce10.chrX              2047531 3 + 17718866 ACC
s cb4.chrX              16901695 1 - 21540570 --C
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0        522258 2 +  4147112 -AC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold14268    82905 3 -    96895 ACC
i caeJap4.Scaffold14268 C 0 C 0
e caeSp111.Scaffold582     30357 57 -   484378 I
e caeRem4.Crem_Contig15  1344307 58 +  1794024 I

a score=-14547.000000
s ce10.chrX              2047534 58 + 17718866 TCAAGTT-------TCAATTT---TCGACTTCCCAGCCTACTCTCT-----------------------CAACTTGAGAAT---AATAGGTCAA
s cb4.chrX              16901696 40 - 21540570 --------------TCAAGTACTGTTGAACTTT------------------------------------CAACT---AGCTGTTGAT-GCCTAA
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold582     30414 32 -   484378 --------------TCAATTT------------------------------------------------CAACTTGAAACTCTCGATAGCCTAA
i caeSp111.Scaffold582  I 57 I 5
s caePb3.Scfld02_0        522261 90 +  4147112 -GAAGATAGATCTCTCGATTC---TTGATTGTTCGGAATAAATGCATTAAGTGGTCACTCCGGTAAACGCAACTTGAACTTTCGAATAGCCTAA
i caePb3.Scfld02_0      I 1 I 7
s caeJap4.Scaffold14268    82908 36 -    96895 --------GCACGTTCACGTT---CCGAATT--------------------------------------CGAGTGAAACTTATCA---------
i caeJap4.Scaffold14268 C 0 C 0
e caeRem4.Crem_Contig15  1344307 58 +  1794024 I

a score=153375.000000
s ce10.chrX              2047592 241 + 17718866 ACAATGCATATTAT---CGCGCATGACAGGTAGCT-----------GTT-AGCTGACACCAC-ACCGTAAACAGAGTATCGAAGA-GGTTTGTTC-TTCG--CTGCTCGAATA-------ACACAAGTGAG----------CACTCAT-CCGTCTAGTG---------ATACAA-CCTGGA------GA-----------ACACACCTCAAGAACCTA--------CTCCTTCTACGTACTTCAACCA-A---------GGTTTCAAGTGATAC----TAGATACGCATCGCAAC-GGGGTCCCCAAGAAAGTGGAATCACATTGCATT
s cb4.chrX              16901740 272 - 21540570 ------CACATCATATCCCCGCATGACAGGTAGCAG----------GGT-GTCTTATAC-----CCGTAAACA----GCCAAGTG-GGTTTGCTCATTCG--CTGCTCGAATAAC-----ACACAAGTGAGGAGAGAGGAACACTCATCCCGTCTAGTGATACACCCAATACAA-CCTGAA------GAGAACGACGACGACACACCTCAAGAACCCGAAGAACCCACCCTTCTATGTACTTCAACAA-CCACGCTCTTGGTTTCAAGTGATACTACATAGATAC-CAT-ATACA-GT------------AGTGGAATCACATTGCATT
i cb4.chrX              I 4 I 144
s caeRem4.Crem_Contig15  1344365 245 +  1794024 ACAATGCATATTAT---CCCGCATGACAGGTAGCTGTTAGAAGCTTGTT-GTCATATACCACAACCGTAAACAGAGTGTCGAAGA-GGTTTGCTC-TTCG--CTGCTCGAATA-------ACACAAGTGCT----------CACTCAT-CCATCTAGTG---------ATACAA-CCTGGA------GA-----------ACACACCTCAAGAACCTA--------CCCCTTCTATGTACTTCAACGC-C---------GGTTTCAAGTGATAC----TAGATAC-CATCGGACA-GCG-------AAAAAGTGGAATCACATTGCATT
i caeRem4.Crem_Contig15 I 58 C 0
s caeSp111.Scaffold582     30451 241 -   484378 ACAATGCGTAAAAT---CGCGCATGACAGGTAGCAGTTAGAAGCTTGTTGGTCTTAT------ACCGTAAACAGAGTGTCGAAGA-GGTTTGCTC-TTCG--CTGCTCGAATA-------ACACAAGTGAG----------CACTCAT-CCATCTAGTG---------ATACAA-CCTGGA------GA-----------ACACACCTCGAGAACCAA---------CCCTTCTACGTACTTCAACGCTC---------AATTTCAAGTGATAC----TAGATAC-CAACGGACA-GCG------CAAAAAGTGGAATCACATTGCATT
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0        522358 247 +  4147112 ACAATGCATATTAT---CGCGCATGACAGGTAGCTGTTAGAAGCTTGTT-GTCTTATACCAC-ACCGTAAACAGAGTATCGAAGA-GGTTTGCTC-TTCGCCCTGCTCGAATA-------ACACAAGTGAG----------CACTCAT-CCATCTAGTG---------ATACAA-CCTGGA------GA-----------ACACACCTCAAGAACCTA---------CCCTTCTAGGTACTTCAACGC-C---------GATTTCAAGTGATAC----TAGATAC-CATCGGACAGGCG------CAAAAAGTGGAATCACATTGCATT
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold14268    82944 236 -    96895 ------TAAGCAAG---CACGCATGACAGGTAGCTT----------GTT-GGCTCATACC---ACCGTAAACAGCACGCTGAAGAGGGTTTGCTC-TTCG--CTTCTCGAATAACCAACAACACAAGAGGT------------------GCA-CAAGTG---------ATACAAGCCTGAACGAAACGA-----------ACACACCTCAAGAACCTA---------ACCTTCTATGTCCTTCAGTGC-T-----------CGTCAAGTGATAC----TAGATAC-TACCGTTCG-ATGGGggcgaatcgaatcgaatcacATTGCac-
i caeJap4.Scaffold14268 C 0 C 0

a score=7693.000000
s ce10.chrX              2047833 15 + 17718866 CACAGGTATTGTTTT
s caeRem4.Crem_Contig15  1344610 15 +  1794024 CAGAGGTATTGTTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     30692 15 -   484378 CGGAGGTAGTGTTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        522605 15 +  4147112 CAGTGGTATTGTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    83180  9 -    96895 ------tattgtttt
i caeJap4.Scaffold14268 C 0 I 181
e cb4.chrX              16902012 144 - 21540570 I

a score=600.000000
s ce10.chrX              2047848 1 + 17718866 G
s caeRem4.Crem_Contig15  1344625 1 +  1794024 G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     30707 1 -   484378 G
i caeSp111.Scaffold582  C 0 I 150
s caePb3.Scfld02_0        522620 1 +  4147112 G
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold14268    83189 181 -    96895 I
e cb4.chrX              16902012 144 - 21540570 I

a score=282.000000
s ce10.chrX              2047849 3 + 17718866 AGT
s caeRem4.Crem_Contig15  1344626 3 +  1794024 AGT
i caeRem4.Crem_Contig15 C 0 I 27
e caePb3.Scfld02_0        522621 34 +  4147112 I
e caeJap4.Scaffold14268    83189 181 -    96895 I
e cb4.chrX              16902012 144 - 21540570 I
e caeSp111.Scaffold582     30708 150 -   484378 I

a score=0.000000
s ce10.chrX              2047852 965 + 17718866  
e caePb3.Scfld02_0        522621  34 +  4147112 I
e caeJap4.Scaffold14268    83189 181 -    96895 I
e cb4.chrX              16902012 144 - 21540570 I
e caeSp111.Scaffold582     30708 150 -   484378 I
e caeRem4.Crem_Contig15  1344629  27 +  1794024 I

a score=91.000000
s ce10.chrX              2048817 1 + 17718866 t
s caeRem4.Crem_Contig15  1344656 1 +  1794024 T
i caeRem4.Crem_Contig15 I 27 C 0
e caePb3.Scfld02_0        522621 34 +  4147112 I
e caeJap4.Scaffold14268    83189 181 -    96895 I
e cb4.chrX              16902012 144 - 21540570 I
e caeSp111.Scaffold582     30708 150 -   484378 I

a score=16.000000
s ce10.chrX              2048818  91 + 17718866 aaTAGTGGTCTTTG---AGCAAAAAGAGGA--TAGCTCAGTTGGAGCAATTGTTACATGTGTTCTATAAGTTGAGTTGAATAGAAGGCCGTCGAAA-------------
s caeRem4.Crem_Contig15  1344657  93 +  1794024 AGTGGTAGTTTTTG---TGTAAAT----GAGTGAGCTTA----TAGCAATTGTTAcgagttttttgaagagagaAGTGTGCAAATGAGGGTCGACGGGTTTGAA-----
i caeRem4.Crem_Contig15 C 0 I 21
s caePb3.Scfld02_0        522655 103 +  4147112 aatggtgGTTTTTGTGTTGTAAGTAGTGGAAGGAGCTCA----TTTGGATTGTTACG-TTTTGTAAAGGGGACGAATGCGtaaatggagg-agaagaaccTCACCAAAA
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold14268    83189 181 -    96895 I
e cb4.chrX              16902012 144 - 21540570 I
e caeSp111.Scaffold582     30708 150 -   484378 I

a score=-1024.000000
s ce10.chrX              2048909 3 + 17718866 GTA--
s cb4.chrX              16902156 3 - 21540570 GCG--
i cb4.chrX              I 144 C 0
s caeRem4.Crem_Contig15  1344771 3 +  1794024 gtg--
i caeRem4.Crem_Contig15 I 21 I 1
s caePb3.Scfld02_0        522758 3 +  4147112 --GAA
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold14268    83189 181 -    96895 I
e caeSp111.Scaffold582     30708 150 -   484378 I

a score=109428.000000
s ce10.chrX              2048912 158 + 17718866 AAAACAGGAAATATACATAAGGTGCTAAAA--GGGTTGTGCCGCAC----GAAA-----ACGAAAGACGG--CTTCACGCAGCGGTGTCTGTCTTCCCGGAC-CAACTCTTTATGAATAATGCACTAATTGCATAGTCAGGTGAAGAGCCCGAGAG--TGCCATATGGGAAGCG
s cb4.chrX              16902159 144 - 21540570 AAAACAGGAAATATACATAAGGTGCTAAAAAGGGGCCGTGCTGGGGTGCCGGAA-----ACGGAAGA--G--C------CTGCGGTTTTGGAG------GCC----TTCTATATGAATAATGCACTAATTGCTGAGTCAGGTGAAAAG---AAGAG--CGCCATATGTGAAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1344775 144 +  1794024 aaaacaggaaatataCATAAGGTGCTAAAA--GGGTTGTGCcgaaa----gaaa-----acggaaga--g--CTCC-CGCGGCGGTGTCGGTC------GTC-CGGTCCGTTATGAATAATGCACTAATTGCTGAGTCAGGTG--AAG---AAGAG--CACCATATGTGAAGCG
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582     30858 144 -   484378 AAAACAGGAAATATACATAAGGTGCTAAAA--GGGTTGTGccgaaa----gaaa-----acagaaga--g--cTCC-CGCAGTGGTGTCGGTC----CAGTCTCAACCCGTTATGAATAATGCACTAATTGCTGAGTCAGGTG--------AAGAG--CGCCATCTGTGAAGCg
i caeSp111.Scaffold582  I 150 C 0
s caePb3.Scfld02_0        522779 145 +  4147112 AAAACAGGAAATATACATAAGGTGCTAAAA--GGGTGGTGCCGCAA----GAAA-----ACGGAAGA--GCTCTCC-CGGAGCGGTGTCGGTT----TAGAC-CAACCCGTTATGAATAATGCACTAATTGCTGAGTCAGGTG--------AAGAG--CGCCATATGTGAAGCG
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold14268    83370 147 -    96895 AAAACAGGAAATATACATAAGGTGCTAAAA--GCG----GCCGGGA----GAAAGTGCCGCGGAAGC--G--ACGGAAGCGGCGGTGTTGGTC-----AGTCGTACCCAAGGATGAATAATGCACTAATTGCTGAGTCAGGTG--------AAGAGCACACCATATGTGAGGCG
i caeJap4.Scaffold14268 I 181 I 268

a score=22761.000000
s ce10.chrX              2049070 189 + 17718866 GTTG-GA-TGAAA--CAACA------CAACAGATGGACAAAAGAT-AACAACTAATTATGAATGGAGAGAAAAC----TAAAACACAGAACAAAATAATCTCATGTGAA-----------------AAAGCGTGGAGTACTAGGG---------TACGACTTCTAACACTGCGAAT-------------TGCATCAAATTGAATTTACTGCGAAGAAAATCTAGA--TGGTGAAACTCTGATAT--T--
s cb4.chrX              16902303 193 - 21540570 GTCTTGA-TGAAA--CAATA------CAACAGATGGG-TGAGGATGAACTGGTAGTTAAAGAAAACg-----------ggaaatacaaaaaatatacat------------------------CTTGGAGGGGGAGGGAGAAGCG-----AATT-TTGACTTCTCACTCTCTCAATCTCCAAATGAAATTGAATCAAATTGAATTTGGAG----GAAACTCAAGATGT-GTGGAAATTGTGTACatatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1344919 224 +  1794024 GTGTCGAGGGGAA--CAATATAGAAGCAACAGATGG---GGAGAT-AACTAGTAGTTAGAAAGAAGGGAA--------GAaaacataacaaaaataaatgcagcaaaaatgttttggtatACGGTTGAAGTGTTAGAGAGAAGGG--TGTAGTTGCTGACTTCTAACTctcagaag----aaatgaaattgaatcaaattgaatttgtCGTTGAGAAACTCGAGA--T-GTGGAAATCTTATAC--TTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     31002 188 -   484378 gttgaaa-tgaaa--------agatgcAACAGATGTG-AAGAGGA-AACTACTGTTTAGCac---------------------tacaaaaacaaaaatagtaaaaaagaag---------------gaagcg---TGGAACTGGGAGTGCAAATGTTGACTTCTTGCTCTTGAAag----gaatgaaattgaatcaaattgaatttgtaGTTGAGAAACTCAAGA--T-GTGGAAATCTTATAC--G--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        522924 220 +  4147112 GCTGAAT-AAGAAGACAGTATAGATGCAACAGATGGG-TGCAGAC-AACTAGTAGTTAGTACGGAAAGGAGAAGtgttagaaatgaaaaacaaaaaagtggaaagaagaaa---------------gatttGTTATGGAGTAGTGAGTGCAAACGTTGACTTCTTACTCTCCAAAG----AAACgaaattgaatcaaattgaatttgtagTTGAGAAACTCAAGA--T-GTAGAAATCTTATAC--T--
i caePb3.Scfld02_0      C 0 I 264
e caeJap4.Scaffold14268    83517 268 -    96895 I

a score=-5967.000000
s ce10.chrX              2049259  9 + 17718866 --CTACAGCAA-------------------------------------------------------
s cb4.chrX              16902496 64 - 21540570 --ttgcaactttttaGACAGAAAATGAAGTGAATATCAAGTTTGTATAGCCAAATACAGAatataa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1345143 17 +  1794024 --TTGCAACATATCAGA-----------------------------------------------AA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     31190 11 -   484378 CCATACAACAA-------------------------------------------------------
i caeSp111.Scaffold582  C 0 I 276
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I

a score=-15686.000000
s ce10.chrX              2049268 183 + 17718866 AGATT----CAATTTGTGTAATACAAA--------------------------------------------------------------------------------TTTTGGAGAAAACAAATATAATTTT-----TATTCTTCAATG--------------AGTTGCGAAAAAATTACGAAATTTTGTGAAGTGTTTTGAAACAAGGATTTCAGGAT----TTTTTTTTCAGGTTTTTA----TTTCAAATCCCTAACAATTATTGCAAAAA--------------------ACGCAACAAAACATTT--GAAA
s cb4.chrX              16902560 300 - 21540570 aaagtttcagaatcagtgaaaaataaaaataaatcaacGTTAGCGAGATATctagaagtctgaaaaaaattatgagagaaaaatgctaggaaaataataaagtgaaatttcaaagacatgaaaaaaaacctcacatagattcttaaatttctgaaattcgaaaact--taaaaaatttataaaa-tttatga--------gaaaaatgaacttcagaaatttgtacttttccggaattctgaaattctgaaatatctga-----attccgcaaatttttgattgtctgaaatttgcaaaattctgaatttctgaaa
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15  1345160  80 +  1794024 AGAGT---------------------------------------------------------------------------------------------------AGATCTTA-------GAAATAGAACATTACATTTGTTGTGAAATT--------------ACT--CAGAAA---TACAA------------------------------TCAGAAA---------------------------------------------------------------------------ACACATTTAtatattt------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=0.000000
s ce10.chrX              2049451 30 + 17718866 AACTATTTGAAAAAAGTAGTCCCGTAACAA
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e cb4.chrX              16902860 29 - 21540570 I
e caeSp111.Scaffold582     31201 276 -   484378 I
e caeRem4.Crem_Contig15  1345240  0 +  1794024 C

a score=-10268.000000
s ce10.chrX              2049481 150 + 17718866 AGCAAATTAGTGAAACCCAAGG---------------------------CTAAAACCATTTCAACAT---------------GTCTCTATAGTTAGACTCAAGTTGGAGGAATAAAGTGCATAATTTTCAAAT-----TGTCTCAA---------TTTTCTGACATCAAATTAGTTTACTAGAACCTATGCACAT--ATATTTTTTAT---
s cb4.chrX              16902889 198 - 21540570 agaaaattatgaaatcccaaaggttctgaaattccaaatatccgatattctaaaat--tttcaaaattttgaaaatcttgcaatttctgaaattcga---aaatt---taaaaatattgtttctttctcaaattttaagatttgaaaattctgagatttctgaaatca--tgaatttcccggagtttttgaatattgaaatttctgat---
i cb4.chrX              I 29 I 50
s caeRem4.Crem_Contig15  1345240  62 +  1794024 -------------------------------------------------ctaa----------------------------------------------------------------------tttctcaATCATAAATGTTTCAA-------------CTGcgccca-----------------ttttcagttttcaaattcctaTCCAC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=-771.000000
s ce10.chrX              2049631 35 + 17718866 CGCAAGATAAAACTAGTGTTTACTTGTTTGATTAT
s caeRem4.Crem_Contig15  1345302  4 +  1794024 -------------------------------TTCT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e cb4.chrX              16903087 50 - 21540570 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=-22753.000000
s ce10.chrX              2049666 318 + 17718866  
s cb4.chrX              16903137 510 - 21540570  
i cb4.chrX              I 50 I 52
s caeRem4.Crem_Contig15  1345306 182 +  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=197.000000
s ce10.chrX              2049984 28 + 17718866 ACTGAAAAACAATTCCAGTTTTCAGGCA
s caeRem4.Crem_Contig15  1345488 19 +  1794024 ac---------atttcattttcccaaca
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e cb4.chrX              16903647 52 - 21540570 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=-4344.000000
s ce10.chrX              2050012 33 + 17718866 CTCTCTCATAA--TATTCAAAAATGAACAAAAATT-------------------------------
s cb4.chrX              16903699 66 - 21540570 CTACCTCATAAAGAATTCCGAGAtgaaataacattttttctcgTCTTCTTCTCACACTCCAACCCT
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig15  1345507  2 +  1794024 ------------------------------------------------------------aa----
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I
e caeSp111.Scaffold582     31201 276 -   484378 I

a score=2282.000000
s ce10.chrX              2050045 27 + 17718866 -AATAAATTTTC--ATATGCCGCCAGGAGA-
s cb4.chrX              16903765 30 - 21540570 -AAGAAATCTTCTAATAAGCCGCCGGGCACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1345509 25 +  1794024 -aagaaatctaCTAATAAGCCGATG-----C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     31477 27 -   484378 aaaaaattcttctaaTAAGCCGACATA----
i caeSp111.Scaffold582  I 276 C 0
e caePb3.Scfld02_0        523144 264 +  4147112 I
e caeJap4.Scaffold14268    83517 268 -    96895 I

a score=91.000000
s ce10.chrX              2050072 1 + 17718866 A
s caePb3.Scfld02_0        523408 1 +  4147112 A
i caePb3.Scfld02_0      I 264 C 0
e caeJap4.Scaffold14268    83517 268 -    96895 I
e cb4.chrX              16903795 0 - 21540570 C
e caeSp111.Scaffold582     31504 0 -   484378 C
e caeRem4.Crem_Contig15  1345534 0 +  1794024 C

a score=222441.000000
s ce10.chrX              2050073 446 + 17718866  
s cb4.chrX              16903795 491 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1345534 461 +  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     31504 452 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        523409 465 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    83785 513 -    96895  
i caeJap4.Scaffold14268 I 268 I 1610

a score=7336.000000
s ce10.chrX              2050519 17 + 17718866 GCAATCTAGTGTTTCAA
s cb4.chrX              16904286 17 - 21540570 GGAAGATAATGTTTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1345995 17 +  1794024 CCAAGATAGTGTTTCAA
i caeRem4.Crem_Contig15 C 0 I 282
s caeSp111.Scaffold582     31956 16 -   484378 CCAAGATAGAGTTTCA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        523874 17 +  4147112 CCAAGATTgagtttcaa
i caePb3.Scfld02_0      C 0 I 577
e caeJap4.Scaffold14268    84298 1610 -    96895 I

a score=792.000000
s ce10.chrX              2050536 10 + 17718866 CTCGGGAAAC
s cb4.chrX              16904303 10 - 21540570 GGTAGAGAAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     31972  7 -   484378 ---GGAAAAC
i caeSp111.Scaffold582  C 0 I 149
e caePb3.Scfld02_0        523891 577 +  4147112 I
e caeJap4.Scaffold14268    84298 1610 -    96895 I
e caeRem4.Crem_Contig15  1346012 282 +  1794024 I

a score=-5209.000000
s ce10.chrX              2050546 1100 + 17718866  
s cb4.chrX              16904313  990 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0        523891  577 +  4147112 I
e caeJap4.Scaffold14268    84298 1610 -    96895 I
e caeSp111.Scaffold582     31979  149 -   484378 I
e caeRem4.Crem_Contig15  1346012  282 +  1794024 I

a score=1195.000000
s ce10.chrX              2051646 18 + 17718866 TGTGTTTTGATGGTGTAA
s cb4.chrX              16905303 18 - 21540570 TGTGGTTTGATTCTGTGG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0        524468 15 +  4147112 TGTGCTTTGAAGCTA---
i caePb3.Scfld02_0      I 577 C 0
e caeJap4.Scaffold14268    84298 1610 -    96895 I
e caeSp111.Scaffold582     31979 149 -   484378 I
e caeRem4.Crem_Contig15  1346012 282 +  1794024 I

a score=674.000000
s ce10.chrX              2051664 10 + 17718866 AATAAATCAA
s cb4.chrX              16905321 10 - 21540570 TTTAAACCCC
i cb4.chrX              C 0 I 15
s caePb3.Scfld02_0        524483  9 +  4147112 -TTGAATTAC
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold14268    85908 10 -    96895 aaaaaatcaa
i caeJap4.Scaffold14268 I 1610 C 0
e caeSp111.Scaffold582     31979 149 -   484378 I
e caeRem4.Crem_Contig15  1346012 282 +  1794024 I

a score=81106.000000
s ce10.chrX              2051674 179 + 17718866 TGACCTTTACACCAGTAATGCGATTTTCTCACCACTGGTGTGATCATCTT-CTT----AAATGACATTTCTTGACATCATCTGTGAAGTTC-AA---AATGTTTATCAATGAA-----------------AACTCCGCGTTTCCACCCGCAGCCG-TTTGAGATA-AGAAAAAAA--AACGATAAAACCGAATGCGCCTTGTTCAGTTA
s cb4.chrX              16905346 203 - 21540570 TAACCTTTCCCACCATAATCCGATTTTCTCACCTTTCGCGTGATCATCTC-TATTGGAAAATGACTTCTTTTGACATCACTAACGCAGTTC--GCTCATTCTTTATCAATGAAAGGTGAAATTTTCGCTCTTCTTTTCTACAACACCCCAAAAAC-CTTTTCGCGCTGATAAGAA--ACCGACTAAAAGGAATGCGCATTTTTTAGTTA
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15  1346294 173 +  1794024 TAACCTTTACATTAATAATCCGATTTTCTCACCTTTCGCGTGATCATCCA-TTC---AAAACTACTATTTTTGACATCACCAATgtagttc--a---aaattttatcattgaa-----------------tttttttcctttccacCCACAAAAC-CTT-------TGATAAGAA--AGTGATAAAAATGGATGCGCATTGTTTAGTTA
i caeRem4.Crem_Contig15 I 282 I 21
s caeSp111.Scaffold582     32128 175 -   484378 TAACCCATTAAACTGTAATCCGATTTTGTCACCTTTCCTGTGATCATCTG-CTA---TGAATGAC-TTTTTTGACATCATTTACacagttcaaa---aattgttatcaatgaa-----------------atttccttttttccaccCACAAACCAATC-------TGATAAGAA--AGCGATAAAAGTGAATGCGCATTGTTTAGTTA
i caeSp111.Scaffold582  I 149 I 20
s caePb3.Scfld02_0        524499 175 +  4147112 TAACCTTTCAAACCGTAATCCGATTTTGTCACCTTTCCCGTGATCATCTGCCCG---AAAACGACtttttttGACATCACCtaaacagttc-aa---aatttttatcaatgaa-----------------atttctttttttccacccACAATTC-TTC-------TGATAAGAA--ATCGATAAAAGTGAATGCGCATTGTTTAGTTA
i caePb3.Scfld02_0      I 7 I 30
s caeJap4.Scaffold14268    85918 167 -    96895 -aactttcAAAGTGTTAATCCGATTTGCACACCTTTTCCGTACTCATTGA-CTT---------TCCGTTTTTAACAGCAccta--aagttcaaa---aattatcgcccatttt-----------------tttttccatctttTGCTTACAGAAA-AC--------TGATAAAAAAGAGCGATAAATTCGAATGCTTTTTGTCTAGTTA
i caeJap4.Scaffold14268 C 0 C 0

a score=-3726.000000
s ce10.chrX              2051853 17 + 17718866 AAATGTAAAAAC-------------CGCTT----
s cb4.chrX              16905549 30 - 21540570 TATGCTGCGAGCTCACAATTCCTTTcattt----
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold14268    86085 19 -    96895 ---------------TGCTCTGCTGCACCGGTGT
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        524674 30 +  4147112 I
e caeSp111.Scaffold582     32303 20 -   484378 I
e caeRem4.Crem_Contig15  1346467 21 +  1794024 I

a score=-1020.000000
s ce10.chrX              2051870 10 + 17718866 -TTTTTTTTTG
s cb4.chrX              16905580  9 - 21540570 -tcttcttct-
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold582     32323  6 -   484378 -ttatct----
i caeSp111.Scaffold582  I 20 C 0
s caeJap4.Scaffold14268    86104 10 -    96895 TTCTTGTTTA-
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        524674 30 +  4147112 I
e caeRem4.Crem_Contig15  1346467 21 +  1794024 I

a score=2439.000000
s ce10.chrX              2051880 16 + 17718866 ----------TTTGATTCTTGAATGA
s cb4.chrX              16905589 16 - 21540570 ----------tctaactctcgaaaaa
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15  1346488 16 +  1794024 ----------tctgacttttgaaaaa
i caeRem4.Crem_Contig15 I 21 C 0
s caeSp111.Scaffold582     32329 16 -   484378 ----------tttgatttctgaacaA
i caeSp111.Scaffold582  C 0 I 1
s caeJap4.Scaffold14268    86114 19 -    96895 TCcagtaattttttgcttt-------
i caeJap4.Scaffold14268 C 0 C 0
e caePb3.Scfld02_0        524674 30 +  4147112 I

a score=262629.000000
s ce10.chrX              2051896 476 + 17718866  
s cb4.chrX              16905609 464 - 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15  1346504 463 +  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     32346 467 -   484378  
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0        524704 468 +  4147112  
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold14268    86133 485 -    96895  
i caeJap4.Scaffold14268 C 0 I 50

a score=910.000000
s ce10.chrX              2052372 1 + 17718866 T
s cb4.chrX              16906073 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15  1346967 1 +  1794024 T
i caeRem4.Crem_Contig15 C 0 I 545
s caeSp111.Scaffold582     32813 1 -   484378 t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        525172 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    86618 50 -    96895 I

a score=-1438.000000
s ce10.chrX              2052373 2 + 17718866 TA-
s cb4.chrX              16906074 2 - 21540570 -CA
i cb4.chrX              C 0 I 647
s caeSp111.Scaffold582     32814 2 -   484378 tt-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        525173 2 +  4147112 tt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    86618 50 -    96895 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=-2218.000000
s ce10.chrX              2052375 15 + 17718866 TTGAGTTGA------AATGTT--
s caeSp111.Scaffold582     32816  9 -   484378 t--------------gaaatttt
i caeSp111.Scaffold582  C 0 I 67
s caePb3.Scfld02_0        525175 21 +  4147112 ttttagtgacgttcaaaaact--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold14268    86618 50 -    96895 I
e cb4.chrX              16906076 647 - 21540570 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=573.000000
s ce10.chrX              2052390 32 + 17718866 GATTTgcgccaggaaattgctgtaaaacatgc
s caePb3.Scfld02_0        525196 30 +  4147112 cattagTCAGAGGAAAC--ATGCAAAACGTGC
i caePb3.Scfld02_0      C 0 I 559
e caeJap4.Scaffold14268    86618 50 -    96895 I
e cb4.chrX              16906076 647 - 21540570 I
e caeSp111.Scaffold582     32825 67 -   484378 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=0.000000
s ce10.chrX              2052422 952 + 17718866  
e caePb3.Scfld02_0        525226 559 +  4147112 I
e caeJap4.Scaffold14268    86618  50 -    96895 I
e cb4.chrX              16906076 647 - 21540570 I
e caeSp111.Scaffold582     32825  67 -   484378 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=74.000000
s ce10.chrX              2053374 9 + 17718866 ACTAGTGTC
s caeSp111.Scaffold582     32892 6 -   484378 ACTAGT---
i caeSp111.Scaffold582  I 67 C 0
e caePb3.Scfld02_0        525226 559 +  4147112 I
e caeJap4.Scaffold14268    86618 50 -    96895 I
e cb4.chrX              16906076 647 - 21540570 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=-1023.000000
s ce10.chrX              2053383 30 + 17718866 ----TTCATGC-------ATTGTCACATATTTTGAAAATAC
s caeSp111.Scaffold582     32898 36 -   484378 ----TTCAtacatcaaaaaatgcatttcgTCTGGAAAA-AT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        525785 27 +  4147112 tttttgcatac-------------ttatattttcataa-ag
i caePb3.Scfld02_0      I 559 C 0
e caeJap4.Scaffold14268    86618 50 -    96895 I
e cb4.chrX              16906076 647 - 21540570 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=546.000000
s ce10.chrX              2053413 1 + 17718866 T
s caeSp111.Scaffold582     32934 1 -   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0        525812 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268    86668 1 -    96895 t
i caeJap4.Scaffold14268 I 50 C 0
e cb4.chrX              16906076 647 - 21540570 I
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=-1191.000000
s ce10.chrX              2053414 5 + 17718866 TATTC--
s cb4.chrX              16906723 5 - 21540570 TATTT--
i cb4.chrX              I 647 I 1
s caeSp111.Scaffold582     32935 4 -   484378 -ACTT--
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0        525813 4 +  4147112 -tttt--
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold14268    86669 5 -    96895 --ttttg
i caeJap4.Scaffold14268 C 0 C 0
e caeRem4.Crem_Contig15  1346968 545 +  1794024 I

a score=278538.000000
s ce10.chrX              2053419 649 + 17718866  
s cb4.chrX              16906729 673 - 21540570  
i cb4.chrX              I 1 I 3
s caeRem4.Crem_Contig15  1347513 667 +  1794024  
i caeRem4.Crem_Contig15 I 545 I 1915
s caeSp111.Scaffold582     32940 668 -   484378  
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0        525818 660 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold14268    86674 646 -    96895  
i caeJap4.Scaffold14268 C 0 C 0

a score=-2624.000000
s ce10.chrX              2054068 16 + 17718866 AATTATATTTAGGAAA
s cb4.chrX              16907405 16 - 21540570 GATCAAACTTCTGAAA
i cb4.chrX              I 3 N 0
s caeSp111.Scaffold582     33608 16 -   484378 aatttttctatttaat
i caeSp111.Scaffold582  C 0 I 84
s caePb3.Scfld02_0        526478  9 +  4147112 -------CTACTTGAT
i caePb3.Scfld02_0      C 0 I 2185
s caeJap4.Scaffold14268    87320 12 -    96895 CATTAAATTTAA----
i caeJap4.Scaffold14268 C 0 C 0
e caeRem4.Crem_Contig15  1348180 1915 +  1794024 I

a score=0.000000
s ce10.chrX             2054084 2 + 17718866 TT
e caePb3.Scfld02_0       526487 2185 +  4147112 I
e caeJap4.Scaffold14268   87332 0 -    96895 C
e caeSp111.Scaffold582    33624 84 -   484378 I
e caeRem4.Crem_Contig15 1348180 1915 +  1794024 I

a score=65206.000000
s ce10.chrX             2054086 138 + 17718866 ATCAATCTGGCAAAAGACTGTCATCAAAACCATCAAAGTCATCATTGTTAGAGTCTGTTG---TAGTTTTGTGTGTGCCAGTTTTTGGTCGG---TTTGATATTGCAACAGGATCATCGTAGGAAAAATCTTCAGCTTCTGAAA
s caeRem4.Crem_Contig15 1350095 135 +  1794024 ATCAATCCGGAAGGAGACTTTCATCAAACTCTCCAAAATCGTC---GCTAGTATCTGTGA---CAGTTTTTCTTGTTCCCGTTTTAGGACGA---GATGACATTACAACAGGATCTTCATACGTAAAGTCTTCGGCTTCTGAAA
i caeRem4.Crem_Contig15 I 1915 N 0
s caeSp111.Scaffold582    33708 138 -   484378 ATTAATCTGGAAGGAGACTGTCGTCGAAATCTCCAAAGTCATCAAGATTACTGTCAGTGG---TAATCTTCCGTGAACCAGTTTTTGGACGA---GTTGTTGTCACAACAGGATCTTCGTATGAAAAATCTTCAGCctctgaaa
i caeSp111.Scaffold582  I 84 C 0
s caePb3.Scfld02_0       528672 138 +  4147112 GTTAATCCGGTAGGAGGCTCTCATCAAACTCTCCAAAGTCATCTAGATTACTGTCCGTTG---TTGTTTTTCTGGCACCTGTTTTTGGCCGA---GTTGTCATTGTGACTGGATCTTCGTATGAGAAATCTTCTGCTcctgaaa
i caePb3.Scfld02_0      I 2185 C 0
s caeJap4.Scaffold14268   87332 141 -    96895 ATCAATCTGGAAGAAGACTGTCGTCGAATTCTCCAAAGTCCTC---GTTATTGTTTGCTGATTGAGTTTTCCGGGCTCCAGTTTTCGGCCGGCTCATTGACATTAAGCCTGGATCTTCGTATGTGAAATCTtccgattctgaaa
i caeJap4.Scaffold14268 C 0 C 0

a score=-310.000000
s ce10.chrX             2054224 1 + 17718866 T
s caeSp111.Scaffold582    33846 1 -   484378 t
i caeSp111.Scaffold582  C 0 N 0
s caePb3.Scfld02_0       528810 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold14268   87473 1 -    96895 a
i caeJap4.Scaffold14268 C 0 C 0

a score=-372.000000
s ce10.chrX             2054225 24 + 17718866 AAAATAAA--ACGAATACTCAGAAAA-
s caePb3.Scfld02_0       528811 26 +  4147112 cgagaaaatcacgttttctcaaaaaa-
i caePb3.Scfld02_0      C 0 N 0
s caeJap4.Scaffold14268   87474 13 -    96895 --aaaaaa------------agaaaaa
i caeJap4.Scaffold14268 C 0 C 0

a score=407.000000
s ce10.chrX             2054249 13 + 17718866 ACACACAGAAAAA
s caeJap4.Scaffold14268   87487 13 -    96895 ataaacaaatgaa
i caeJap4.Scaffold14268 C 0 N 0

a score=762.000000
s ce10.chrX            2065002 26 + 17718866 GTAAAAACTTGTGATTTTTTTCAAAT
s caeRem4.Crem_Contig0 4319247 23 +  4500979 gtaaaatattttg---tttttcaggt
i caeRem4.Crem_Contig0 N 0 C 0

a score=16196.000000
s ce10.chrX            2065028 226 + 17718866 TTCAGCAGATGACAATTCCGGTTGCAAAACCATATCCCAGTGGAGAAGGTGTGGAATATCCCAGAAATATGTATTTTTTCGACAATGCAACTAACGATGAAATTGTGATTTTA---GAGGAGCAGC---AACATGATCCAAGAGTCATTCTGTTAGCTCAACTACGTAATTGTCTATTTGTACCTTATCGACAAACATTTAAAACAAACGTTCCAGAAGTAGTATATGTGAG
s caeRem4.Crem_Contig0 4319270 229 +  4500979 ---aAGTAATGACTATACCGGTCGCTAAACCGTGCGAGGATGGAATTGGGGTCACTCCTCCGGACAATCCGTACTTTTTCGGAGATATTCCGGATGGAGGGATCGAGCTAACACCTGAAGTGGAAATCGAGCAAGATCCGAGAATTCTTTTGTCTGCTCAACTACGCAACTGTTTGTATGTAACTAACGAAAGTCATTTCGAGACTAATGTACCGGAGGCTGTCTACGTAAG
i caeRem4.Crem_Contig0 C 0 I 41
s caePb3.Scfld02_0     2822503 232 -  4147112 ttcagaaaatgacGGGATCAGTTCCAACTACTAGTGAAGATGGTGTTGGTGTAATTCCACCTAACAATTCGTATTTGATAAATGATATACCAGAGGATGGAGTTGAACTATTACCTGAAGATCAGAACGTGCAAGATCCTATGTTACTTCTTTCTGCTCAACTCCAAAACAGTTTGTATGTAACTTCTCGAAGTACGTTCAGGACAAACGTGCCAGAAACTGTCTACGTAAG
i caePb3.Scfld02_0     N 0 C 0

a score=-244.000000
s ce10.chrX            2065254 43 + 17718866 TTtaccatcactgggggaagtattttcaaacggctactatagt
s caePb3.Scfld02_0     2822735 31 -  4147112 TTGAACTT-----------Gtgtttgaaaatggtt-tttttgt
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 4319499 41 +  4500979 I

a score=0.000000
s ce10.chrX            2065297 136 + 17718866 gctaaaatgttcaaatatcatagtgaaacttttcaaaaaaattgtttatatttttttaattactggcaattcggcaaaactttgactgaaaattttgaaaaacctaaaaacttttgaagtgtttTTTAGCATAAAT
e caePb3.Scfld02_0     2822766   0 -  4147112 C
e caeRem4.Crem_Contig0 4319499  41 +  4500979 I

a score=1210.000000
s ce10.chrX             2065433 55 + 17718866 ACTCTATACCAATATGTTTAA------CAACAA---------ATTAAAAAAAAAATAGACAACCTCTGTA
s cb4.chrX             13521967 70 - 21540570 ATTCGATACAAATATGCCTGAAACTGTCAACGTGAGtcaattattaaaaaaaatataaataaatttttcg
i cb4.chrX             N 0 C 0
e caePb3.Scfld02_0      2822766  0 -  4147112 C
e caeRem4.Crem_Contig0  4319499 41 +  4500979 I

a score=546.000000
s ce10.chrX             2065488 2 + 17718866 TT
s cb4.chrX             13522037 2 - 21540570 tt
i cb4.chrX             C 0 I 1
s caePb3.Scfld02_0      2822766 2 -  4147112 tt
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0  4319499 41 +  4500979 I

a score=27616.000000
s ce10.chrX             2065490 217 + 17718866 CAGAACGACTTCACTGATAGAAGTTCTCATTGGAAAGACTATGTAGACAAAGGAGGATGGGTGAGTTAAAGCAAGTTTGAACGCTTGAAAT--AAGTCTGAAA---TTTAGAAAAATATCAGAAAGTCACATCAACTTATTGCTAAATTGGTGGCAAATAGTATTGCACAAGAATATCATTTATTGGCAAAAATTGGAGAAGAACAAAAGTGCTCGGTAAGT
s cb4.chrX             13522040 218 - 21540570 AAGAAAGATTACACCACTCGTTCGATGCAGTGGCAGATGTATGTTGACCAAAAAGGATGGGTGAGTTGCAGAGTA-GATAATGGTTTGAACTGGCGACAGTAT---TCTAgaaattgttggaaaaatcggttcaaataactggaaaaatggtGGCAAGCAGTATAATACAGGAGTACAATGTGCTAGCTCGTTTGGGACGAGAGGAAAGATGCATGGTGAGT
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4319540 216 +  4500979 CAGAAAGACTTGATTGCTCGCTCTGTTCAGTGGAAGAACTACGTAGAACAAGGAGGATGGGTGAG----AAAATGTGATAATTGCTCATAT--GAGATCATATCTGTTTAGAAAAACTTCAACAGTACGACTCAGATGATTGCCAAGATGGTCGCCGAGAGCATCAAGCAGGAGTACAACACATTGGCCCGTATCGGTCAAGAAGAAAAGTGTATGGTAAGT
i caeRem4.Crem_Contig0 I 41 I 56
s caePb3.Scfld02_0      2822768 218 -  4147112 tagaaagaCTTCATAACAAAAGGAAATCGATGGAAAGAATATGTCGAGCGATGTGGATGGGTATAATCTCCAACCCTGTAATTCTTTAAaa--ttattcttatt--ttcagaaaaacttcgaGAAATCTCAACAGACAATTGCAAAAATGGTTGCAAGCAGTATTAGAGATGAATATAAACTGTTGGGACAAGTAGGGCAAGAAGAAAGATGCATGGTGAGT
i caePb3.Scfld02_0     C 0 C 0

a score=-1273.000000
s ce10.chrX             2065707 66 + 17718866 TTTACGAAATTTGAA---------------------------TATTTACAAACACTATTTTTATTAGTGATTAGAAAAATACGGCAACCAAAT
s cb4.chrX             13522258 50 - 21540570 -----AAAGCGAAAA---------------------------AACtgaggaacatttttttca-----------aaaaatccctccgtgaaat
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2822986 80 -  4147112 --TTTGAAGTGGGAATGAGTTGAAATCATATCACTTTCGAATTACTAATTAATGTAACTCCCT-----------GAAAATATCTCAACAAAAT
i caePb3.Scfld02_0     C 0 I 243
e caeRem4.Crem_Contig0  4319756 56 +  4500979 I

a score=287.000000
s ce10.chrX             2065773 9 + 17718866 TTTTCAAAA
s cb4.chrX             13522308 9 - 21540570 tttgaaaga
i cb4.chrX             C 0 I 329
e caePb3.Scfld02_0      2823066 243 -  4147112 I
e caeRem4.Crem_Contig0  4319756 56 +  4500979 I

a score=0.000000
s ce10.chrX             2065782 669 + 17718866  
e caePb3.Scfld02_0      2823066 243 -  4147112 I
e cb4.chrX             13522317 329 - 21540570 I
e caeRem4.Crem_Contig0  4319756  56 +  4500979 I

a score=29.000000
s ce10.chrX             2066451 3 + 17718866 TCA
s cb4.chrX             13522646 3 - 21540570 TTG
i cb4.chrX             I 329 C 0
e caePb3.Scfld02_0      2823066 243 -  4147112 I
e caeRem4.Crem_Contig0  4319756 56 +  4500979 I

a score=16051.000000
s ce10.chrX             2066454 102 + 17718866 TTTCAGTTCGGCCTCGAGAACATTGCACTTCATCTTCGCGATGTCATCAGCATGGAAACGTTCTTCACGAGTCTTCTATTCTAACAAACTGCACAAAAAAGA
s cb4.chrX             13522649 101 - 21540570 TTTCAGTTTGCCCTCGAGAGCATTGCTTTGCACGTCAGAGAACTTATAAGTTTGGAAACGTTCTTCTCCAGTCTTCTCGAATAAATC-GGTCACAGCTTTAt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4319812 102 +  4500979 tttcagtttgcgATGGAAAAGATTGCATTGCACCTGCGCGATCTTATTCGAATGGAAACATTCTTCTCCAGTCTCTGCCAGTAATTCTGTTCAGGAATAAAT
i caeRem4.Crem_Contig0 I 56 C 0
s caePb3.Scfld02_0      2823309  84 -  4147112 tttcagtttggctTGGAAAAGATTGCACTCCACCTCCGTGAAGTTATCAGTAAAGAAACATTCTTTAACAGTCTAcgtgaatga------------------
i caePb3.Scfld02_0     I 243 C 0

a score=-4438.000000
s ce10.chrX              2066556 44 + 17718866 GAACAATTTATTCA--------ATTGTTATTTTCAT--AGTGTAATAAACAATC
s cb4.chrX              13522750 52 - 21540570 gataatattttttatttgccAGAATGTTAATTCCATTCAGTATG--gaacaata
i cb4.chrX              C 0 I 14010
s caeRem4.Crem_Contig0   4319914 45 +  4500979 GTTAATTTCAGTTGTGGAATACAATTTTA---TCATTTAAC------AACaatg
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       2823393 51 -  4147112 ---aaatttttatatggcagataattttatttttgtttaaatTGACATACaatc
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18190   377197 43 +   435062 GAAAAATTTATATT------GAAAATTTAGTAGTACTCAAC-----AATAAATG
i caeJap4.Scaffold18190 N 0 C 0

a score=26188.000000
s ce10.chrX              2066600 634 + 17718866  
s cb4.chrX              13536812 648 - 21540570  
i cb4.chrX              I 14010 C 0
s caeRem4.Crem_Contig0   4319960 643 +  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       2823445 553 -  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18190   377240 529 +   435062  
i caeJap4.Scaffold18190 C 0 I 2049

a score=-4786.000000
s ce10.chrX              2067234 54 + 17718866 CAATTTTTAAAAAAATTCAAAAACTTTAAAGGCAAAACTGAAAATTTAAAA---AAA--------
s cb4.chrX              13537460 31 - 21540570 -AAGGTTTCAAAGA--------------------------ATTGTTCAAAA---CAA----ATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4320603 31 +  4500979 taatgtttt-------------------------------tttgttcgaaa---caaCTTTATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2823998 36 -  4147112 -aatttttaagaTA--------------------AGACATGCTATTTCAAACTCCAA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   377769 2049 +   435062 I

a score=225033.000000
s ce10.chrX              2067288 462 + 17718866 AAACCTACAATCAGAAGTAACATCTACATCTTCATCCTTGACAACTTCCGATACAGACGTATAGCGAGAAAGTCGATTGGCATATCTGaaataaaaattaatttttttttttGGTTTAATTCTTAGTTATCTTATTTATTCTTATTTATAACAAACCGTTCTTGCTGCTTGGCCACCATTTTTGGCGGAACTTTTGCTCTCTTCAGTCCTCCATCCCATTCCAAATCGACCAGGCCACCTTTGTTGGCAATTTCTTTTTTCACGCGGTTCGCAAAGTCGACGGCATCCTCTCCATCTCGTCTTGTCATTGGCGGCAGGTACCAGACATTGCAAATAATGGCCCACGAAGTCATCATTCTCATGATATATCCGCACCACGATTGCTCTGAGCTGTTCCAGAACGCGTCTCCGAAACGTGAATCGTATTTCATTGCAATTGGGTAGATGGTTGTGCCAATCTGA
s cb4.chrX              13537491 391 - 21540570 CCACTTACAGTCCAGTGCAACTTCCACATCTTCGTTCTTGACAACTTCCGAGACCGATGTATATCTGGAGAGGCGGTTGGCAT-----------------------------------------------------------------------ATCTCTCCTGTTGCTTTGCGACAAGCTTTGGTGGAACCTTGGCTCGCTTGAGACCTCCATCCCATTCCAAATCGACAAGTCCTCCCTTGTTAGAAATTTCCTTCTTGACCCGATTGGCAAATTCGACAGCATCTTCACCGGCTCTCTTGGTCATTGGTGGCAGATACCAGACGTTGCAGATGATCGCCCAGGATGTCATCATTCGCATGATGTATCCACACCACGATTGTTCAGAGCTGTTCCAGAATGCGTCACCGAATCGGGAGTCGTACTTCATGGCGATGGGATAAATGGTAGTTTCTatctaa
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   4320634 440 +  4500979 TGACTTACTTTCAAGAGTGACTTGAACATCCTCGTGCTTGACAACTTCCGACACAGATGTATACCTCGAGAGACGGTTTGCatacctgaa----------attttcaattttagaaaacat--------tCCTGGTATTCTTTAC----AACAAACCTCTCTTGCTGTTTGGCAACCATTTTTGGAGGAACTTTAGCCCTTTTCAGACCTCCATCCCATTCCAAATCAACTAGTCCACCCTTGTTGGCAATCTCCTTTTTGACACGATTGGCGAAGTCAACGGCATCTTCTCCAACTCTTTTAGTCATTGGTGGCAGGTACCAGACATTGCAGATGATAGCCCAAGAAGTCATCATTCTCATAATGTATCCACACCACGACTGTTCGGAACTGTTCCAAAAGGCGTCGCCAAAACGTGAGTCGTATTTCATTGCTATCGGGTAGATGGTTGTCTCGATCTAA
i caeRem4.Crem_Contig0  C 0 I 43
s caePb3.Scfld02_0       2824034 441 -  4147112 --ACTCACAATCAAGAGCGACGTCGAcgtcttcatttttgacaacTTCCGACACAGATGTGTATCTTGAGAGACGATTCGCGTATCTGaa---agaattcagtttttgttttaaa----------------ctGGTTTATCACGTGGCAAACTAACCTTTCTTGCTGTTTGGCAACCAATTTTGGTGGAACTTTAGCTCTCTTGAGACCTCCATCCCATTCCAAATCCACGAGTCCTCCTTTATTagcaatttcttttttgacacgGTTTGCAAAGTCAACCGCGTCCTCTCCAGGTCTCTTGGTCATTGGTGGTAGGTACCAAACGTTGCAAATGATAGCCCAGGATGTCATCATTCTCAAAATGTATCCACACCAGGACTGTTCCGAGCTATTCCAGAAGGCGTCACCAAAACGAGAGTCGTACTTCATCGCAATAGGGTAGATGGTggtttcaatctga
i caePb3.Scfld02_0      C 0 I 79
s caeJap4.Scaffold18190   379818 391 +   435062 AAACTTACAATCAACATTAACATCAACGTCCTCATTTTTGATGACATCGGACACTGAAGTGTATCTCGATAGACGGTTTGCGT-----------------------------------------------------------------------ATCTCTCCTGCTGTTTAGCAATCATTTTTGGCGGAACTTTGGCTCTCTTGAGTCCTCCATCCCACTCCAAATCAACGAGCCCGCCCTTGTTGgcaatttcttttttaactCTATTCGCAAATTCCACTGCTTCTTCTCCaattcgttttgtcattggaGGGAGATACCACACGTTGCAGATTATTGCCCACGAAGTCATCATTCTCATAATGTATCCAAACCAAGACTGCTCGGAACTGTTCCAAAAGGCGTCACCAAATCGAGAATCGTACTTCATGGCTATCGGGTAGATTGTAGTTTCAATCTGA
i caeJap4.Scaffold18190 I 2049 C 0

a score=-2628.000000
s ce10.chrX              2067750 48 + 17718866 --------AATGTTAACAGTTTATGAAAA--AATCAATACCTATAATAAGTTCAACAA
s cb4.chrX              13537885 35 - 21540570 --------cattttttgatttttt-------aatcgACTTTC--------TTTGATAG
i cb4.chrX              I 3 I 2
s caePb3.Scfld02_0       2824554 42 -  4147112 --------agttttcccaattttcggaaaaaaatcgtaGTTT--------TTTGACAA
i caePb3.Scfld02_0      I 79 I 58
s caeJap4.Scaffold18190   380209 43 +   435062 AAGTAATAAACTTTGTAGATATGAGGATT--AATTGA-------------TTGAGCAA
i caeJap4.Scaffold18190 C 0 C 0
e caeRem4.Crem_Contig0   4321074 43 +  4500979 I

a score=243807.000000
s ce10.chrX              2067798 407 + 17718866 -------ACCTCAAAAGATCCTTTCTTAAACATCATAACAGACGTGTTATTGATGCAGGTGCCTTCTGGGAAGATCAAAATTGGAAGTTTATCCGGATTGGTGCAATGTTCCTTCAATTTTTGAGCAACTACAAGACGATCCTTGGCTTCACTTCTCTCAAACCAAATATGACTTGAAGCTCGCGAAAGTGCTCTTTGTACAATACCCAAGAGTCCT----------------------------------------------------------------------------TCGTGTTTCTGTCCGATCAATGCATATACATTGTCGATGGAAAGAATGAGAGCATCAATTGGAGAGGTGTGGTTTGCGACGCAGATTCCTTGTGCCTGCGCTTTATAGTGTTCATCGTGAAAGTATACCACAGCCGTGAGACTTCTTGAAAGGATTCGGTAGCAAATAAGCATACACTTGTGGTTGAGAGCTCTGAA
s cb4.chrX              13537922 406 - 21540570 -------ACCTCAAAGGATCCCTTTTTAAACATCATCACAGAAGTGTTGTTAATACACGTCCCCTCCGGGAAGATCAAAATCGGAAGCTTTTCAGGGTCCTGGCAATGTTGGCGGAGCTTTTGAGCGACAATGTAGCGATCTTTAGCTTCACTCCTCTCGAACCAAATGTGGCTCGATGCACGAGAAAGTGCTCGTTGTACAATGCCAAGCAGACCA----------------------------------------------------------------------------TCATGCTTCTGTCCAATCAGTGCGTAGACGTTGTCGATAGAAAGGATAAGCGCGTCGATTGGGGATGTGTGGTTGGCGACACAGATTCCTTGTCTCTCGGCTTTGTAGTGTTCATCGTGGAAGTAAACTACGGCTGTGAGACTTCTGGAGAGGATCCGGTAGCAGATGAGCATGCACTTATGGTTgagtttcctg-a
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   4321117 406 +  4500979 -------ACCTCAAACGATCCCTTCTTGAACATCATCACAGAAGTGTTGTTAATACAGGTTCCTTCCGGGAAGATCAGAATCGGCAGTTTATCCGGATCAGTGCAGTGTTCACGAAGTTTTTGAGCCACAACGTGTCGATCTTTTGCCTCACTTCTCTCGAACCAAATGTGACTTGATGCACGAGAAAGAGCTCTTTGAACAATACCGAGAAGACCA----------------------------------------------------------------------------TCATGTTTCTGTCCAATGAGTGCATAGACATTGTCGATTGACAGAATGAGAGCATCAATTGGAGAGGTGTGGTTGGCAACACAGattccttgtttttcagctttgtAGTGTTCGTCATGGAAGTACACAACGGCCGTAAGACTTCTGGAGAGAATGCGATAGCAGATGAGCATACACTTGTgattcagttttctg-a
i caeRem4.Crem_Contig0  I 43 C 0
s caePb3.Scfld02_0       2824654 407 -  4147112 -------ACCTCAAAAGATCCCTTCTTGAACATCATGACAGAAGTGTTGTTGATGCATGTTCCTTCCGGGAAAATCAAGATGGGCAATTTATCCGGATTAGTGCAatgctctctcagtttttgagcgACAACAAGACGATCTTTCGCTTCACTTCTCTCAAACCAAATGTGACTTGATGCACGGGATAAGGCTCTTTGTACAACTCCAAGAAGGCCT----------------------------------------------------------------------------TCATGTTTCTGTCCAATCAAGGCGTACACATTGTCAATAGAAAGGATGAGAGCATCAATTGGTGAAGTATGATTGGCAACACAGATTCCTTGTTTCTCAGCTTTGAAGTGTTCATCATGGAAGTAAACGACAGCAGTGAGACTTCTGGAGAGAATTCGGTAGCATATGAGCATACATTTGTGATTGAGCCGTCTaca
i caePb3.Scfld02_0      I 58 C 0
s caeJap4.Scaffold18190   380252 490 +   435062 AAATTTTACCTCAAAAGACCCCTTCTTGAACATCATAACAGACGTATTGTTGATGCATGTTCCCTCTGGGAATATCAAAATTGGTAGCTTTTCCGGATCGCTGCAGTGCTCGCGCAGCCTTCCCGCTACGATTGACCGATCTTTTGCCTCATTTCTTTCGAACCAAATATGACTTGACGCACGTGATAATGCTCGTTGAATAACTCCAAGAAGGCCTAAAAGAGACGTAAATGtcgtattttcattttttattattttttttgttcaaattccGGTTACCACTCCACATACCGTCGTGTTTCTGTCCGATAAGAGCATAGACATTGTCAATGGACAGAATGAGAGCGTCAATCGGTGAAGTATGATTGGCGACACTGATTCCTTGACTTTCGGCTTTGAAATGTTCATCATGGAAGTAGACGACAGCTGTGATACTTCTGGAGAGAATTCGGTAGCATATCAGCATGCACTGGTGGTTAAGCTTTCTGAA
i caeJap4.Scaffold18190 C 0 I 129

a score=-19248.000000
s ce10.chrX              2068205  36 + 17718866 AAGATACGTTTAGAT------------------------ATATAGATCTTTTTTCCGATT--------------------------------------------------------------------------------------------
s cb4.chrX              13538328  23 - 21540570 aaaata-----------------------------------agagattGTCTTT--AATT--------------------------------------------------------------------------------------------
i cb4.chrX              C 0 I 194
s caeRem4.Crem_Contig0   4321523  20 +  4500979 aattca-----------------------------------atagTTTGTC-----AATT--------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0       2825061  15 -  4147112 aatatt-----------------------------------agaaa----------aatg--------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18190   380871 150 +   435062 aaaatactctcagacattcccagaaaatttgagaccaaaatatcgatttttttg--aattttttcaaaatcgataattttgatttctcaaagtttcagaccaatcggagcattatccgaattttcgctgaatgttttgttttgttttcgttC
i caeJap4.Scaffold18190 I 129 C 0

a score=261153.000000
s ce10.chrX              2068241 510 + 17718866  
s cb4.chrX              13538545 543 - 21540570  
i cb4.chrX              I 194 C 0
s caeRem4.Crem_Contig0   4321553 471 +  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0       2825092 466 -  4147112  
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18190   381021 510 +   435062  
i caeJap4.Scaffold18190 C 0 I 766

a score=4785.000000
s ce10.chrX              2068751 70 + 17718866 ACAATTCAATGAAAAAACATGTATTTA------------TAATT-----GGCATTTTTTGTGATTAATCGAATTACGTACTAATAGG
s cb4.chrX              13539088 58 - 21540570 -----------aaaaaa--tgtgatta----gTATTAATTGACA-----GTCATTG-TCTTAGTTAATCAAATCAAATA------GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4322024 69 +  4500979 -----------aaaaaa---gaaattc----aaatgaattaATGGAAATGGCATTGTTCTTGATTAATTAAATCAAGTACTGATTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2825558 71 -  4147112 -----------aagaagaatggaattaGTTGGAATTAGATGATT-----GGCATTGTCTCTTAGTAATTGAATCAAGTGTTGATTGG
i caePb3.Scfld02_0      C 0 I 225
e caeJap4.Scaffold18190   381531 766 +   435062 I

a score=1176.000000
s ce10.chrX              2068821 9 + 17718866 CTAACTTCT
s cb4.chrX              13539146 9 - 21540570 CAGATTACT
i cb4.chrX              C 0 I 147
s caeRem4.Crem_Contig0   4322093 9 +  4500979 CTGATTact
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2825629 225 -  4147112 I
e caeJap4.Scaffold18190   381531 766 +   435062 I

a score=-7771.000000
s ce10.chrX              2068830 624 + 17718866  
s caeRem4.Crem_Contig0   4322102 303 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2825629 225 -  4147112 I
e caeJap4.Scaffold18190   381531 766 +   435062 I
e cb4.chrX              13539155 147 - 21540570 I

a score=-246.000000
s ce10.chrX              2069454 16 + 17718866 tctccactggctctac
s cb4.chrX              13539302 16 - 21540570 TCTTTTCTATCTCTAT
i cb4.chrX              I 147 C 0
s caeRem4.Crem_Contig0   4322405  1 +  4500979 ---------------C
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2825629 225 -  4147112 I
e caeJap4.Scaffold18190   381531 766 +   435062 I

a score=-2430.000000
s ce10.chrX              2069470 37 + 17718866 tccactttcaaCATATTTAAAACTACCCGAT-----CAAATG
s cb4.chrX              13539318 21 - 21540570 ---------------------TCTATCTTCTACCAGAAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4322406 15 +  4500979 ---------------------TCTACCGGCTAT------TCT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2825854 42 -  4147112 TTCACTTTTCGTGTATCTACTACTACCCGCTACCAGTAATAT
i caePb3.Scfld02_0      I 225 C 0
e caeJap4.Scaffold18190   381531 766 +   435062 I

a score=135586.000000
s ce10.chrX              2069507 555 + 17718866  
s cb4.chrX              13539339 545 - 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   4322421 581 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       2825896 711 -  4147112  
i caePb3.Scfld02_0      C 0 I 149
s caeJap4.Scaffold18190   382297 582 +   435062  
i caeJap4.Scaffold18190 I 766 C 0

a score=-6962.000000
s ce10.chrX              2070062 119 + 17718866 --CACTGTTTTTTATCAA------TCTGGCCAGGCC----------ATCAGACCATATTT--------GGGCGAAAGAT-AGA-----------------AGAAAAATGTCTG---AACGCTGTTT-----GATAAGACAATAGATTTCG----------AGTTGTTCCC--AAATAATTTAT
s cb4.chrX              13539886 107 - 21540570 --TTGTGTTACCTAT----------CTGACCAGACCTTTTCTGC--ATCAGACCATTTTT--------TGTGACATGTC------------------------GGAATGTTTG---AACGTTGTAAA----GATAAGAC---------------------AACGGTAGGT--TCGTGATTAAC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   4323004 128 +  4500979 --TTGTGACCCTTATCAA--TGTGACTGACCAGACC--ATCTGC--ATCAGACCATTTCt--------agagaaaagatgaaa-----------------agaggAATGTTTGGCAAAAG-----AA----GATAAGAT-------GTTGTCTCGA----AGTGGTTTTT--TGCTAATTTAT
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       2826756 150 -  4147112 --TCATGTTTATTATCAAACTGCATCTCCCCAGACG--GTCAACAAATCAGACCATTTTT---------GTGACAAGATACGG-----------------ACGGGAATTGTTG---AACGTCGTAAAACATGATAAGGTCACagaattcttttcaattccGGTGGTTCTTTCTGATAATTTAT
i caePb3.Scfld02_0      I 149 C 0
s caeJap4.Scaffold18190   382879 145 +   435062 CACTGTGAATCTGAT----------CTGACCACAGT--ATCAAC--GCGAAATGGTTTGTTGCAGACAAGAGATAAGATCAGAGTGACCCGGATGTTGACAGACGGAcgcttc---cattttttcaa----gatAAGAT-------TACG----------GACCATTTGGTCTGATAATTGAT
i caeJap4.Scaffold18190 C 0 I 54

a score=329.000000
s ce10.chrX              2070181 2 + 17718866 GA
s caeRem4.Crem_Contig0   4323132 2 +  4500979 GG
i caeRem4.Crem_Contig0  C 0 I 57
s caePb3.Scfld02_0       2826906 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383024 54 +   435062 I
e cb4.chrX              13539993 0 - 21540570 C

a score=-1093.000000
s ce10.chrX              2070183 47 + 17718866 TGAAGAAAAAAAGAAAACT-TCTTGACCTTCA---ATCTCA--------GAAATAGAAA
s cb4.chrX              13539993 44 - 21540570 ------------GAGATCACTTTTGATCTTCA---TTCTTATTCTCGGCGAaacgaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2826908 44 -  4147112 --------------TATCA-GTAGAATCTTCAAtctttttaatcaaaaagaaactgacA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383024 54 +   435062 I
e caeRem4.Crem_Contig0   4323134 57 +  4500979 I

a score=738.000000
s ce10.chrX              2070230 5 + 17718866 TACAA
s cb4.chrX              13540037 4 - 21540570 -acaa
i cb4.chrX              C 0 I 8
s caePb3.Scfld02_0       2826952 4 -  4147112 -ACTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   383078 5 +   435062 TACTC
i caeJap4.Scaffold18190 I 54 C 0
e caeRem4.Crem_Contig0   4323134 57 +  4500979 I

a score=84842.000000
s ce10.chrX              2070235 418 + 17718866 ACCTCGAATATGTTGATCAATGTGTCCACGTACATCTGCCGCAATCCAAGGGACTTTCCAAATGTTGCCAGAATGATGCATAGCAAGACGGTCAGTGCCACTGGTGGAAAGGCAAATGTAGTTAATACAAAGAGCAAATGCTCGATTCCGAGCATAC-----TGCCAG-TTGTTTTTCGTT-TTGTATTCCTATTTTCGA-TTTGGTTCTGTAAAAAAATATAAAAAGTAAATCAAAATTCAGTAATAGAAAGTTTCAACACATT--AAAGCGGAAAAGGAAATGGAGGCGGTCAGTTGAGATGACGGAATGTGTCAGTGAAAATAGAAACATTTTCTG-CGATAAGTT---------ACCGGAGCAATGAAGGTGAAGCACG------------CGGTGGGAAACC-------AC------CAGA-CTGTGCTGAAAATGTGTCAAT----------CGGAGAAAAACTGCGT
s cb4.chrX              13540049 373 - 21540570 ACCTCGAAGATGTGAATGAGAGTGTCGACGTACATCTGCCGCAACCCAAGCGATTTTCCAAACGTGGCCAGTATGATGCATAGCAGAACCGTCAATGCCACTGGTGGGAAGGCGAATGTTGTAAAAAGAAAGAGCAGATGCTCAATTCCGAGCATTTTTGTGTGGTAG-CTGAAT-------TTGAGTTCCTATTCTTGGAGTGGATCCTGAAAACA------------------------AGTCATTTAAAGTTTAGAGAAACTTTCAAGTGTTGGTTGAAAGAGTGAAA---AAGAGTGA--------TAAGtctctgaaaatgtaaaatgttTCAG-CGACA----------GGAACCGGGACAGGAATGAC--------------------CGGACAGAAACCgaaac--ac------gaaa---------aaaaagtgtcatt----------CAAAAAACACCCGCGT
i cb4.chrX              I 8 I 163
s caeRem4.Crem_Contig0   4323191 417 +  4500979 ACCTCGAAAATGTTGATGAGAGTGTCGACGTACATCTGCCGCAACCCAAGTGATTTTCCGAACGTGGCGAGGATAATGCATAGCAGAACAGTCAGAGCCACTGGTGGAAAGGCGAATGTAGTTAATACAAAGAGCAGGTGCTCGATTCCCAGCATAC-----TGCCAGTctgtatttttttcttgtatttcGGCTCTTGG-GTTGACtctgaaaaga------------------------tgaaattaTAACTTTCGAAAGA----GAATAGTAAACGGAAAGGACGGCATGTATCAGTGA---------ATGTCGCTGAAAGTATGAAACGTTTCAG-CGATAAGTTACCAGTGACACCGGAGcaagagagaaagcgaaatgTAACATTTTAGAGAGGAGAAAGCGGAAA--GTATGTTGGAAACCCGCATTCAAAGAGtgtcatt----------caaaaaaca-cCGCGT
i caeRem4.Crem_Contig0  I 57 I 25
s caePb3.Scfld02_0       2826956 375 -  4147112 ACCTCGAAAATGTGAATGAGAGTGTCGACGTACATCTGCCTCAACCCGAGTGATTTTCCAAATGTGGCAAGGATGATGCATAATAGAACTGTGAGGGCCACTGGCGGAAAGGCAAATGTTGTCAATACAAAGAGCAGATGCTCGCATCCCAGCATAC-----TGCCAG--TGTCTTTGATCCTTGTGTTCCGATTCTCGA-GCTGACTCTGTAATAA------------------------TATAATATGGCGT-------------AAATTATT------AAGTGCGGAATGTATTAACGC---------GTgtcaatgaaaatg-gaaatgtttcAG-CGAGAAGTAACCAGTGACACCGGAGCAAGAGATACAGGAAACC------------CGGTGAGAAACGGAAAAcgac------taga---------aaaaagtgtcatt----------caaaaaacatcctGAT
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18190   383083 389 +   435062 ACCTCGAAAATCTGAATAAGTGTGTCCACGTAGATTTGTCGGAGCCCTAACGATTTTCCGAACGTGGCGAGTATTATGCACAGCAAAACAGTAAGTGCAACCGGCGGAAAGGCGAATGTAGACAACACGAAGAGCAAATGCTCAAGGCCAAGCATGC-----CGTCAA-ATTAATTCAACT-T----CCCCGGTGCTCGA-ACTgtgtctgaaaataaaa---------------------agatctctgagattgaattaga----atagaacagaaagaaagaaagaaagcaaaatgaaa------------tCAGAGCGAGCATATTCTATCACAgacgaacagaaaaaaaaagaaagaaagctaGCAACGAAATAAAAT------------TGAGTTGATAGTTAAAG--AG------taaa--------gataaagtttgatgaaaattttgacagaaaac--------
i caeJap4.Scaffold18190 C 0 C 0

a score=-16555.000000
s ce10.chrX              2070653  88 + 17718866 CGAACT------AAAAGTGCAAAGCGACAAAT-----------------------------------------------------------------ATTTG------------AAAAAAAAACTAGGAGAGACTATCAAAATGTTTCGATTATAACC-------------CAATGTACACG----------------AG
s caeRem4.Crem_Contig0   4323633 159 +  4500979 TGAACTATTTGGAAAAGTGCAAAATAGGAGGTGATGAACAACATAAGTGTTGTCTTTTT---------AGGTTAACGAGAGTCTTGTCTACTA----TTGGG------------AGAAAAAACCTAACCGAAA--ATCTTACTGTTCAAACTAAACAC--------------AATATCTATTTCTAAGATCTTACCGGAA
i caeRem4.Crem_Contig0  I 25 C 0
s caePb3.Scfld02_0       2827349 181 -  4147112 TGAACTTGTCGGTAAAgtgcaaaaagagaaacgtGTTACACTgtc--tcttgattttttactTGGAGGAGGTCAACAAGACTTTTCTCTAGTAAAACATGAgtccatccaaaaaaaaaaaaaataaggtgaaac-attttgatatcttATCAAGAAATGAGTGAGAGAGGGAGATATGAGAA----------------AG
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold18190   383472  75 +   435062 ---act------gaaaatgataaggaaaaaat-----------------------------------------------------------------aaagg------------ggagaaaa------tagaaC-AGTTGATCGTTCCATTTTCAATG------------CGAATATGAG--------------------
i caeJap4.Scaffold18190 C 0 I 22
e cb4.chrX              13540422 163 - 21540570 I

a score=-3644.000000
s ce10.chrX              2070741  1 + 17718866 A----------------------------------------
s caeRem4.Crem_Contig0   4323792 39 +  4500979 AACACCT--ATCTTCTCATTCACAACCTGCACctatttcga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2827530 31 -  4147112 AACAACTTGATTTTTACACTGAAA---TGCACCC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383547 22 +   435062 I
e cb4.chrX              13540422 163 - 21540570 I

a score=797.000000
s ce10.chrX              2070742 19 + 17718866 CAAAAAGTAAAAAAAAAAG--
s cb4.chrX              13540585 19 - 21540570 caataaattagaaaaaaag--
i cb4.chrX              I 163 C 0
s caeRem4.Crem_Contig0   4323831 19 +  4500979 aaagaagaaagaaaagaac--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2827561 16 -  4147112 -----ACTTTGAAGATAACAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383547 22 +   435062 I

a score=26490.000000
s ce10.chrX              2070761 396 + 17718866  
s cb4.chrX              13540604 393 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4323850 431 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 59
s caePb3.Scfld02_0       2827577 425 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   383569 415 +   435062  
i caeJap4.Scaffold18190 I 22 I 20742

a score=-3494.000000
s ce10.chrX              2071157 59 + 17718866 TGCACATTTTGGCAGTGGCCATGTTACTTTTTTTAAAGACGAATAGTTTTAATAGTTTT
s cb4.chrX              13540997 50 - 21540570 CTAATATACTGCGAATGAACTTG-TATTTGTTCTATAGAAga------ctaaaaatt--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2828002 26 -  4147112 ----TAT-------GTCAACATA-TAATTTTTCG---------------TGAA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e caeRem4.Crem_Contig0   4324281 59 +  4500979 I

a score=21348.000000
s ce10.chrX              2071216 646 + 17718866  
s cb4.chrX              13541047 634 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4324340 646 +  4500979  
i caeRem4.Crem_Contig0  I 59 C 0
s caePb3.Scfld02_0       2828028 703 -  4147112  
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold18190   383984 20742 +   435062 I

a score=91.000000
s ce10.chrX              2071862 1 + 17718866 T
s cb4.chrX              13541681 1 - 21540570 t
i cb4.chrX              C 0 I 2725
e caePb3.Scfld02_0       2828731 103 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e caeRem4.Crem_Contig0   4324986 0 +  4500979 C

a score=-602.000000
s ce10.chrX              2071863 82 + 17718866 TTTTGGGGGGTGTTCTCTCCTG-AAAGTTTCGTT-----GAAACGGTTTTAAATGACTAGATGTTCAGTTGTTAAGGGAGTTCACTTG
s caeRem4.Crem_Contig0   4324986 58 +  4500979 ----GAGGAGTGTTCAAGTGTGCAAAATTtggtttacaaaaaattgtgtcgAAGAATTGAAT--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2828731 103 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=-11988.000000
s ce10.chrX              2071945 190 + 17718866 CAAATTTCAAAGGTGGAAAATGTCAAATAGACATTTGGGCAACCCTAAAATCTTTAAAATATAAAACTTAGGATAACAAAATGTTTATTTTGCTGGACTTAAAACG-------------------------AACCTGAAGAATCGAATTTTATAACGAGATTTCACGAA--------------------------AATTTCGAAAAGGCAGTAGGTTTT-AGGTAAAGTTATC-----------------------------TTTAATTTC
s caeRem4.Crem_Contig0   4325044  73 +  4500979 ---------------GAAGATGCTAGA-----ATCCGG--------------------------------GCAGaatgaattat---------------------------------------------------------------------------------------------------------------attttcaaaggcGAAGTaaatttt---gta---ttctt-----------------------------ttcaaattc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2828834 222 -  4147112 ----------------caaactacaaa-----atcaGGA------TGAGATTCTG------------TTTGCAGAATGAATAATACAATTGGACAGAAGCAGTACGTGGAAACGGGtgttttgaatacaaaaatgtgataaatCAAATGTTctg-------tttacaaaaaatgagagctCCTGTGAGCTCGGCAATCCTCtaatgaaaaagagattttcaggga---ttttgagtttgtggaaattgaagaaaaaattgaactcaatttc
i caePb3.Scfld02_0      I 103 I 24
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=-730.000000
s ce10.chrX              2072135 28 + 17718866 TCTGTGTTTTGCGGTCGGAAATATTCAA
s caeRem4.Crem_Contig0   4325117  5 +  4500979 -----------cagTC------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2829056 24 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=8240.000000
s ce10.chrX              2072163 396 + 17718866 AAATTGTTTTATGATGCATATTTGGTTTGTTTGTAAAAGTTGAAAATT--------------TTGGAGATTT-------------AGCTGAA----ATTGGGC----ACGTTCCAACTAAACACCATTGGAATTAATGCAATTATATGGTTTGTTACTCTATGAGAAACTTGTTTTTATTCAATATTGACGATAAGGATCTTTGGTGGCTTTT------------CAAATAGTTTAACCCTGGACTTTGAGATTAAAAAGTGGATGCACCAGGTG------------TCCAACTTCCCGTATCTCTTCACTCGGTGGTTTCCATCTTTTGTGACAACACTTGACACCGGAAGTCAC------TCAAAACCTGATTGCACACCTTTCAAAACAAAGGT---------GGTGTGAAAAAAAAATGGTTTTCTGATTTTGTGATTTACTTTTT-------TTCCATTTTTTCTCTTTTTG--
s caeRem4.Crem_Contig0   4325122 330 +  4500979 ---TTGGTT--TGATTT------------TAAGCAAaagattca------------------ttgaaaa----------------aagttat----atttgaCGGGAAAACTCCAA--------------------------------------AACGC-------------------------------------GATCTCTGAGAGCTTCCTacttctccctttttctcattGAGAGATGAactttgaagttgaaaaaaagag--accaGGTGCTCCATTCACTCTCCAAATCCCTTTCTCCCTC--ATCAGTGGTTTCTATTCATTGTGACAGCACTTAGCACCGGAAATCACACATCTCCACAACGTGATAGCATTCTATTCAAAACAAAGCTAGATTgatcagagagaaaaaaagaaacttt-----ttttttcatt---ttttt-------tttcatttcagctctcttttct
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2829080 423 -  4147112 AGattgttt--tgatttat-tttattttcggagGAAAAGTTTAAAATCACTTCGCTGGGTGGATGAAAAGCCGgaacacaaaaacaattaatGAAAGTAGGAAGATAAGATTTCAACAAAG----ATTT---TCTCCTCAAAGTTTTGGTTCCTAACAC-ATTTGCAAGTTATCAACAT------TTGTGAACAAAGATCTTCGGGGGCTTCT--CTTCTCTCTACATTCTGTTCAAAGATgaacctggaaaattggaaga------gcCATGTG------------TCCGATCTCTTTGCTTTCTC--ATCAGTGGTTTTCATTCATTGTGACAGCACTTATCACCGGAAATCACACATCGCCACAACGTGATAGCAACCTATTCAAAAcaatctt------------gagaaaaaaagaagcattgtcagttttttcgtt---tttctgtttttgtttcatttcagcTCCCTTCG--
i caePb3.Scfld02_0      I 24 I 35
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=-39.000000
s ce10.chrX              2072559 17 + 17718866 AAGAATTTC-CTAATGTC
s caeRem4.Crem_Contig0   4325452 18 +  4500979 attattttcttttatttc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2829503 35 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=5035.000000
s ce10.chrX              2072576 242 + 17718866 ------------------------------TTTACGTTTCTCTCTTGTTAGTTTTTTGCC---GTGTCCCAGTTTTCAT--GATTGTTTTCGATTGAAAAAAAAGTAGCGAGAAAATCTCTTTCCGTTCTTCGGAAAAATG----AAGATATGCA-AGAATC-------------------GGTT--TTCAAAAGTGACAATTGAGAT--------ATTCTCCTCAC----------------CTGGTACAGCCA----------AAGAGAGAAC-GCTGCAGTGTTTGCTCAGCAA-CGTATTGTGCTGAGTTGTGCAC-CCCGAAGAATGGTCAACAC
s caeRem4.Crem_Contig0   4325470 305 +  4500979 tgtGTTCGATTAGATGACACGAACAGTTTCGTTTCTCTTCTATCTGTCGTTTTTTATTAC---TTGTCCTAATTTGACG--GCGTGTTTCcattcaaaataaaagaagagaagaaaaatctga----TCATCGCAAAAATAGAACAAGATAGGAAGATGATTGCAAACGTTGGTGGTGCTATGTT--TTAAATTAATTCAAATGAATGTGAAGAGAGCTCTTCTCGG--------------GTATGAGGAAGCCT----------AACAAAACTGAACTCAAATGTTTACTCAGTGGTGACTTTGTGCTGAGCGTTGCACACCCGAAGAATGGTCAGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2829538 301 -  4147112 ------------------------------TTTTCTCTTctatctttcttctttttttgcatgttGTCCCAATTTGACACTGAATgttttccatccaaaaaaGTGGAGAGAAAACTTATCTCA---TTCATCGGAGATAGAAGAAACAACGTGCAGAAAATC-----TATGAGTTGTTTCTTGATGATGAAACAACATCATTTAAAATTCCTGATTAACCTACTCAGCACAAACAGGTGAAGATTGAGTATGCTTCTCGGGCGAGAACGGAGAACAACCCAATTGTTTACTCAGCAG-GAGATAGTGCTGAGCGTTGCACACTCGAAGAATGGTCAAAAC
i caePb3.Scfld02_0      I 35 I 575
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=200.000000
s ce10.chrX              2072818 141 + 17718866 AGATTGTCGCCAA--------------ATTAAACTTCTTTTCAAATTTTCAATGATAACGACTTACTAAAATTTTTGGA-----GCACGAATTT---------TTAAGTAGTTTTGACAA---TAAAAACTTG-----------TTGCCT---ATTCGAAGCACATCAAAGAGCAATCAATCTGTG
s caeRem4.Crem_Contig0   4325775 177 +  4500979 CGTTTTTCACTCACAGTTCCTTCAACTATATAAGTTGTTTTC----TTCCA-----AATAATTTGCTAAATTTTGTTTACCTTCACATAAATTTTGCATGTTCTCAATTGGTTCTGGTTGACTTCATAACTTGCCCTCCGCGGTTTACTTCGCATCTGCAACACATCAAGAACCAATTGTTTTGTG
i caeRem4.Crem_Contig0  C 0 I 494
e caePb3.Scfld02_0       2829839 575 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I

a score=0.000000
s ce10.chrX              2072959 196 + 17718866 ATCTTTATGTAGGCGTAAAAAACTAAAGGTTTCATGGGAGACTGAGGTTTACAAATTTTTTACTAGAGGTTTTTGAAATGCATGAAATTTCAAAACTTTTGGTACCGATTTTTGCCATAGTGTATTCCCTCATAAAATATGATAAAAGCTCGATAATGAGAAAAAAATAAAAAATTTGGAGGCAAAATCCAAGTAA
e caePb3.Scfld02_0       2829839 575 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13541682 2725 - 21540570 I
e caeRem4.Crem_Contig0   4325952 494 +  4500979 I

a score=2463.000000
s ce10.chrX              2073155 78 + 17718866 ATAAACGGCTGCTTTACGACATTCAAACGATTTGATATTGAAGAAAATGCCTCCGTGTTTTTATT--TTATTCTTTGTTT
s cb4.chrX              13544407 80 - 21540570 ACGAATATCTATTTTACGACTTTTAAAGGATTTGAGACTGTGGTAAATACGTTTGTTTTGTAGTTACTTGGTTTTTATTT
i cb4.chrX              I 2725 I 130
e caePb3.Scfld02_0       2829839 575 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e caeRem4.Crem_Contig0   4325952 494 +  4500979 I

a score=0.000000
s ce10.chrX              2073233 930 + 17718866  
e caePb3.Scfld02_0       2829839 575 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e cb4.chrX              13544487 130 - 21540570 I
e caeRem4.Crem_Contig0   4325952 494 +  4500979 I

a score=69.000000
s ce10.chrX              2074163 2 + 17718866 CG
s cb4.chrX              13544617 2 - 21540570 CA
i cb4.chrX              I 130 C 0
e caePb3.Scfld02_0       2829839 575 -  4147112 I
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e caeRem4.Crem_Contig0   4325952 494 +  4500979 I

a score=630.000000
s ce10.chrX              2074165 12 + 17718866 CACACATTC-ACA
s cb4.chrX              13544619 13 - 21540570 CACACATCTCATC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2830414 12 -  4147112 CACAAATAT-ATA
i caePb3.Scfld02_0      I 575 C 0
e caeJap4.Scaffold18190   383984 20742 +   435062 I
e caeRem4.Crem_Contig0   4325952 494 +  4500979 I

a score=236.000000
s ce10.chrX              2074177  9 + 17718866 -TTATCCCTG
s cb4.chrX              13544632  7 - 21540570 -TCATCCC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4326446  9 +  4500979 -TTGTCTCAG
i caeRem4.Crem_Contig0  I 494 C 0
s caePb3.Scfld02_0       2830426 10 -  4147112 TCTCTCCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383984 20742 +   435062 I

a score=3448.000000
s ce10.chrX              2074186 60 + 17718866 ACACTCCCT--AGTATCAACACACTCTAATC--TAGATCGTTTCATTATTGGAAAGAAAGGAGA
s cb4.chrX              13544639 45 - 21540570 --GCTCTCTTTTCAAACCATTCTATCTAACC--TTGATCGTTTCAA---------------TCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4326455 51 +  4500979 ATACTCTCTTCCTCACTAACACTGCCTAACC--GAGATCATTCCAATTTC-----------TCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    271260 53 - 33334924 ACATTCTCTTATAAATCTacactctctttctctcagaTCGTTTCAATTAT-----------TGA
i caeSp111.Scaffold629  N 0 C 0
s caePb3.Scfld02_0       2830436 49 -  4147112 --AATCTCT--CCATTCCATACACACTCTCCCTCAGATCGTTTCAATTAT-----------TGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   383984 20742 +   435062 I

a score=182147.000000
s ce10.chrX              2074246 466 + 17718866  
s cb4.chrX              13544684 480 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4326506 480 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold629    271313 479 - 33334924  
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0       2830485 495 -  4147112  
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18190    40042 425 -   435062  
i caeJap4.Scaffold18190 n 20742 C 0

a score=-11861.000000
s ce10.chrX              2074712 30 + 17718866 ---GCTTTCACAAGGCCCCAA-TCATCTTA----TCAC
s cb4.chrX              13545164 30 - 21540570 ----ggaaaaaagaaattagatttaaatcaaaaa----
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629    271799 21 - 33334924 ---TATTTCGAAGGCTTGTAA------CTG--------
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0       2830987 27 -  4147112 ---gatgagaaaagactttgattcattttc--------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18190    40467 24 -   435062 accttttgaaaatgaaattaa------tag--------
i caeJap4.Scaffold18190 C 0 C 0
e caeRem4.Crem_Contig0   4326986 33 +  4500979 I

a score=296730.000000
s ce10.chrX              2074742 676 + 17718866  
s cb4.chrX              13545195 719 - 21540570  
i cb4.chrX              I 1 I 61
s caeRem4.Crem_Contig0   4327019 743 +  4500979  
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold629    271820 730 - 33334924  
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0       2831014 729 -  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18190    40491 648 -   435062  
i caeJap4.Scaffold18190 C 0 C 0

a score=-8047.000000
s ce10.chrX              2075418 35 + 17718866 --------------AATTTTC--CCCAACAACAA-TACGAAA----TCAACTTTTT
s caeRem4.Crem_Contig0   4327762 42 +  4500979 --------------AAGTTGGAATTCGAAAACAATGACATCACTAGTAAACATTGA
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold629    272554 32 - 33334924 -----------------------tttgagaaaaa-aacaaaaagattcaACTTGAA
i caeSp111.Scaffold629  I 4 I 20
s caePb3.Scfld02_0       2831748 37 -  4147112 ------------------TTCGTTTCAATAACAG-AATGGAATGACTGGACTTCAA
i caePb3.Scfld02_0      I 5 I 35
s caeJap4.Scaffold18190    41139 53 -   435062 AAtccataacaaaaaaatctgaCATGAAAAACAA-AGGCAACtgatttcatatt--
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13545914 61 - 21540570 I

a score=179004.000000
s ce10.chrX              2075453 268 + 17718866 TTTC---aggaggagaagaaggacaagaagaaggatgagaag------------------aaggaggagaaaaaggaaaagaagGTAA--ATATCTA---------CTGTAAGGTTTCAAAAATC------TTATGACT----AATTTTTGAA-------C--TTACAGGAAGATaagaag----------------aaggatgagaagaaaaaggataagaagaagg---------aggataagaaagacaaaaaggacaagaaggacaagaaggataaaaaggataagaaagagaaaaaggatgataagaagtctaagaaaaataagaaggaagaaTTATAA
s cb4.chrX              13545975 312 - 21540570 TTTCagaaggacgagaagaaggatgagaagaaggaggagaagaaggacaagaaggttgataaaaaggagaagaaggagaagaaggtaa----ttttggaa------cgaaaaaaa----aaaatgaacagctgaaattttgaaatatcaaaatcaaaaaat--tttcaggaagacaagaag----------------aaggacgagaagaagaaggataagaagaaggaagacaaaaaagacaagaaggataagaaggacaagaaagacaagaaggataagaaggataagaaggagaagaaggatgacaagaagtccaagaagaacaagaaggaggaGCTCTAA
i cb4.chrX              I 61 I 1500
s caeRem4.Crem_Contig0   4327838 262 +  4500979 tttcagaaggaggagaagaaggataagaagaaggaggag---------------------aaagctgagaagaaggacaagaaggtaa----atttcagatgtgctcggaaaaat----gaaatga-----ttccgttt---------------------t--ttttaggaagagaagaag----------------aaggatgataagaagaaggataagaagaagg---------aggataagaaggacaagaaggataagaaagacaaaaaagataagaaagataagaaagacaaaaaggacgacaaaaaatccaagaagaacaagaaggaGGAACTCTAA
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold629    272606 264 - 33334924 tttcagaaggatgagaagaaggataagaagaagg---------------aggag------aaggtcgagaagaaggaaaagaaggtaA----TTTGG---------CTTGAAGTT----GGATTT------TGCTGACT----GGATGTATAT-------TTATTacaggaggaaaagaaa----------------aaggacgaaaagaagaaggacaagaagaagg---------aggataagaaagacaagaaggacaagaaagacaagaaagataagaaggataagaaggaaaagaaggacgacaagaagtccaagaagaacaagaaagaGGAGCTCTAA
i caeSp111.Scaffold629  I 20 C 0
s caePb3.Scfld02_0       2831820 279 -  4147112 ttacagaaggaggagaagaaggacgagaagaaggaagagaagaaggacaagaag------aaggaagaaaagaaggaaaagaaggtagaaaTTCTTA---------TTCCAAATT----AAAATT------CCACAATT------ACCTCAAT-------T--TTacaggaagaaaagaag----------------aaggacgataagaagaaagataagaagaaag---------aggataagaaggacaagaaagacaagaaggacaagaaagataagaaggataagaaggacaagaaggatgacaagaagtccaaaaagaacaagaaggaagaaCTCTAA
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18190    41192 239 -   435062 tttcagaaggaagaaaagaaggaa------------------------------------aagaaggagaagaaggaagagaaggTAT----GTT-----------CTTGGAAAT----GAGTCA------------TT---------------------T--TTCTAAGAAAATATAATAtaatcaatgtttttttaaggacgagaaaaagaaggagaaga---------------aggacaaaaaagacaagaaggaaaagaaggataagaaagataagaaggctaagaaggagaagaaggaggaaaagaagtcgaagaagaataagaaggaggagTTGTAA
i caeJap4.Scaffold18190 C 0 C 0

a score=1115.000000
s ce10.chrX              2075721 2 + 17718866 GT
s caeRem4.Crem_Contig0   4328100 2 +  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    272870 2 - 33334924 GT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2832099 2 -  4147112 AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    41431 2 -   435062 AT
i caeJap4.Scaffold18190 C 0 I 294
e cb4.chrX              13546287 1500 - 21540570 I

a score=8819.000000
s ce10.chrX              2075723 208 + 17718866 -------CAGATCATTTTTGCCTGAGTTTCATAAGTTTACTTTCATAT-----AATTTACAACTGGTTTCCTATCATTCTAT-GTTTCATAGTGATTTGCAATTTCTGTGGTTCCCTTTGTTTT-TTTGTATTCACTTTCATGCCCAAACGATTATCCAATTTGATTCATATTATTTTA-----CTGGTTCCCGAATGCTGCGGCGGAGAGCATAATAAAATTTTTA-----------
s caeRem4.Crem_Contig0   4328102 188 +  4500979 -------CAGACGACTA----TCAAGTT-------TTTACTTCaacatttctaaa-ttttcactggttcattttcattctgtggtttcatagtgatt-------------------tttgtttc-tttt--ttcgctcaTATGGCTATGTTA-AGTGTAATTTAATTCATAATATGTAAGAGATTTTTGCGCTGTTT--------CAGTTGCATAATAAACTTTGTAATATTAAGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    272872 149 - 33334924 GTCTGTCTGTATGA---------TA-----------TTACTTcaacatttctgaaattgtcaCTGGTCCTTTCTCATTCTGTGGTTTTatagtgatt-------------------tttgattcattt-------ctctttcgacCA--------TTTAATTTGATTCATAATATGTAA-----TCGTGTTTTCTC-----------------TAATAACATTCT-------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2832101 155 -  4147112 -------CATATGAATT----CCAA-----------CTTCTTCAACATTTCTAAACTCTAAACTGGTCTATTTTCATTCTGTGGTTTCAtagtgatt-------------------tttgattt-cat-------ctcGTATGACCA----------TAATCTTATTCATAATATATAA-----TTGTTTCCGTTTT--------GGGTAGCGTAATAAAATTCTCA-----------
i caePb3.Scfld02_0      C 0 I 1055
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I

a score=-2009.000000
s ce10.chrX              2075931 45 + 17718866 AAAC---CTGAGCTTTGTTGTGCATGCTTACCAATTTTTTTGAGTTGA----
s caeRem4.Crem_Contig0   4328290 42 +  4500979 AAAC---CTCAACGTTTCTGTACTCA---AGATTactttttggattga----
i caeRem4.Crem_Contig0  C 0 I 92
s caeSp111.Scaffold629    273021 46 - 33334924 ---CTTGCCCAACACACCTtcctttg---aagttttttcttattttcagaga
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2832256 1055 -  4147112 I
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I

a score=-1265.000000
s ce10.chrX              2075976 266 + 17718866 TATAGAACTTGTAGCAGTTTGATTTATTATACGCTTGCCTATTTTAAGTCCCCCAGCTGACCCAGCTGACTCAATTCTTGGAAAAACTTGGTTCTGAAAAATTTAATCTTGTTTTTTTTGTTGTTGAAAATTCACTACAAGTTACCGTTTTCGGAAAAAATGATCtaccggatttattctattagtcttgctccccggattaattttgcatttacacttgtcttgtcccaaatttactagtcaaaaatactcttacagtttctatt
s caeSp111.Scaffold629    273067 165 - 33334924 gaaagaagttg-----------------------------ATTCCAAG---------------AAACAATCCAATAtattgaaa-------tattgaaagtggcaatttagttttttcttgagtaTATAATACATTTTGAGTTA----------GAATAAAGTTCTGACAA---TACTTGATCAG-------------------------------ATTGTTTTATCCTGAACT------TTAGAAATCAGtttgctctttctctt
i caeSp111.Scaffold629  C 0 I 46
e caePb3.Scfld02_0       2832256 1055 -  4147112 I
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I
e caeRem4.Crem_Contig0   4328332  92 +  4500979 I

a score=0.000000
s ce10.chrX              2076242 55 + 17718866 GCATAAAAATTTAAAAAGAAATCGGGAAAAATCCACGAAAATTTGTCCGTGTACA
e caePb3.Scfld02_0       2832256 1055 -  4147112 I
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I
e caeSp111.Scaffold629    273232 46 - 33334924 I
e caeRem4.Crem_Contig0   4328332 92 +  4500979 I

a score=990.000000
s ce10.chrX              2076297 39 + 17718866 TCTTTATATTGTCCGTGTACATCTTTATCCCAAATTTCC
s caeSp111.Scaffold629    273278 39 - 33334924 TCTaaattttgttctttttcaatttcccttCCAATTTCC
i caeSp111.Scaffold629  I 46 C 0
e caePb3.Scfld02_0       2832256 1055 -  4147112 I
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I
e caeRem4.Crem_Contig0   4328332 92 +  4500979 I

a score=1196.000000
s ce10.chrX              2076336 35 + 17718866 -------ATCAGATCA------TTG--------ATTAACTTCAGATCAGTCAAAAA
s caeSp111.Scaffold629    273317 56 - 33334924 GGTTCGTACTGGATTGAGCTCTTCGTTTTCATATTCATGCTGAcatcaaccaaaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2833311 33 -  4147112 -------ACTAGATAA------TCG----------CAATCTGACATCAAccaaaaa
i caePb3.Scfld02_0      I 1055 C 0
e caeJap4.Scaffold18190    41433 294 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I
e caeRem4.Crem_Contig0   4328332 92 +  4500979 I

a score=3290.000000
s ce10.chrX              2076371 61 + 17718866 ATGA----GTCAAAAACACGCCTTGACGAACTACTTCATCGGTTCGCGATGAGACAGA-GCTTTCG
s caeSp111.Scaffold629    273373 48 - 33334924 aaga----aggaagaacaAAC----AAGAACTCCTTTCATGGTTCA---------AGA-GTTTTCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2833344 52 -  4147112 cagagaataagaagaaaaaac----aagaactcCTTTCATGGGTCA---------AGA-GTTTTCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    41727 48 -   435062 ----------ATGAGACAAAG----AAGAACTCCTTCAATGG--CA--ATGAGCAAGACGTTGTCG
i caeJap4.Scaffold18190 I 294 C 0
e cb4.chrX              13546287 1500 - 21540570 I
e caeRem4.Crem_Contig0   4328332 92 +  4500979 I

a score=48017.000000
s ce10.chrX              2076432 119 + 17718866 ATGAGTTGGCTTATCTGTCTACGTGCATAATTATGCGGCTATTAGTCGGAGAAGCGTTTCCTCCGTCCGACTATAAACCACGGGGCTAGTCCCCGCACCCAGCTATTATGTTA--CACCAA
s caeRem4.Crem_Contig0   4328424 112 +  4500979 ATGTGTGGGCTCATCTGTCTACGTGCATAATTATGCGACTATTATCCCCACAAGCGATT-CTCCATTCGGATATAAATCATCGACTTG---TCCGTTTATA-----GCTATTATCTAAAAA
i caeRem4.Crem_Contig0  I 92 C 0
s caeSp111.Scaffold629    273421 110 - 33334924 ATGAGTGGGCTTATCTGTCTACGTGCATAATTATGCGGCGATTAGTTAGAGGAGCGTTT-CTCTCTTCGACTAGAAATCACTGCTTTG---TCCTCACCCA-----TTTATTA--TACCAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2833396 115 -  4147112 ATGAGTGGGCTTATCTGTCTACGTGCATAATTATGCGGCGATTAGGCAGCGGAGCGTTT-CTCCTTTTGACTATAAATCACTGACTTG---TCCGCACTCAACTATTATATTA--catcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    41775 113 -   435062 ATGAGTGGACTTATCTGTCTACGTGCATAATTATGCGACGATTAGCCGCT---GCGCTT--TGCATTCAACTATAAATCACTcgtttt-ttcccctttttgaCTATTACATTA--CACCAA
i caeJap4.Scaffold18190 C 0 I 1096
e cb4.chrX              13546287 1500 - 21540570 I

a score=-15712.000000
s ce10.chrX              2076551 757 + 17718866  
s caeRem4.Crem_Contig0   4328536 792 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    273531 758 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2833511 796 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e cb4.chrX              13546287 1500 - 21540570 I

a score=63628.000000
s ce10.chrX              2077308 183 + 17718866 -----------------TATTC--CCCACGGTTGTCGCTT------------TTTTTCCAGATTGTTGATCATTTCTGTCT--GT-TTTTTTTC-TAACGTTTACAACTTTTTCTGG-AAAAAATG----GAAAAGAAGTGCATAGTCCCATGGGGTATAATATTGG--AAAAAAGGCAAAAGTTTGCCATTTTGGTCTTGGTTATTATTCCAAGAACACTTTCC
s cb4.chrX              13547787 176 - 21540570 -----------------TATTCCTCCTTcggtttt--tttggct----------tttccaGATTGTTGATCATGTCTGTTTGCGCCatctcttcaaaatgtttaccaa----aaaag-gaaaggag----ATGAAAAAGTGCATGGTCCCATGGGGTGGTTTAAAAGGCAAGGAAACTAGAAGCTTCC-----------CGATTATTATTCCAAGAACACTTCCC
i cb4.chrX              I 1500 I 4
s caeRem4.Crem_Contig0   4329328 188 +  4500979 ------------------attc--CCAACGGTTGTCATTTGTATTCCTC---TATTTCCGGATTGTTGATCATGtctgttt--tccttttcttc-aaatGTTTGCCAC----CCCct-tgaaagaa----aagaaaaagtgcatGGTCCCAAGGGGTGGctcacgaaaaaaaaacggcagAAGTTTGCCAATTCGA--GCGGTTATTATTCCGAGAACACTTGCC
i caeRem4.Crem_Contig0  C 0 I 173
s caeSp111.Scaffold629    274289 189 - 33334924 T------TGTCATTCCTAATTC--CCAACGGTTCTC----------------TTCCTTCAGATTGTTGATCATgtctgttt--ttctcattctc-aaaTGTTTACCAC----Cccga-aaaaggaaac--agaaaaaagtgcacGGTCCCATGGGGTGGGATacgag--aaaaaaggcaaaagtTTGCCAATTCGTCGGGGGTTATTATTCCAAGAACACTTGCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2834307 211 -  4147112 tcatttcttttttccttaatTC--CCAACGGTTGTCATTTGTATTCCTCGTTTCTTTCCAGATTGTTGATCATGTCTGTTT--GCCatcttttc-aaatgtttaCCAC----CCCCAGAAAaggaaacggagaaaaaagtgcatGGTCCCAAGGGGTgggatacaaa--aaaaagaccagAAGTTTGCCAATTCAGC-GAGGTTATTATTCCGAGAACActt--c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I

a score=629.000000
s ce10.chrX              2077491 39 + 17718866 --C---------TTTTTTGTGTTTCCTCTTTCTTA------TTGCTTTAGGTTTTT--
s cb4.chrX              13547967 37 - 21540570 -CC---------TTTTTAGCTTTTCAATTT-----------GTTCTCTTCAGTTCTTT
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold629    274478 51 - 33334924 ACCGAAAGATCATCTTCCGCTCTTTACTTTTCGTTC-----Ttactctttgttttt--
i caeSp111.Scaffold629  C 0 I 132
s caePb3.Scfld02_0       2834518 47 -  4147112 act---------ttttgagctctttacttttcttcccgggttttctcttctttttt--
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e caeRem4.Crem_Contig0   4329516 173 +  4500979 I

a score=329.000000
s ce10.chrX              2077530 2 + 17718866 GA
s cb4.chrX              13548004 2 - 21540570 GA
i cb4.chrX              C 0 I 1038
s caePb3.Scfld02_0       2834593 2 -  4147112 GG
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e caeSp111.Scaffold629    274529 132 - 33334924 I
e caeRem4.Crem_Contig0   4329516 173 +  4500979 I

a score=1043.000000
s ce10.chrX              2077532 63 + 17718866 ACAGCAAATGTTTGACTTTGAAACTTTGAATAAAATTATTCATAATCGATCAAATTCTCTTGT
s caePb3.Scfld02_0       2834595 60 -  4147112 ACAGCAAA---gtaattccagaaaattgaatcaaagttTCTATCCTCAAGACAACTTCCTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e cb4.chrX              13548006 1038 - 21540570 I
e caeSp111.Scaffold629    274529 132 - 33334924 I
e caeRem4.Crem_Contig0   4329516 173 +  4500979 I

a score=0.000000
s ce10.chrX              2077595 520 + 17718866  
e caePb3.Scfld02_0       2834655   0 -  4147112 C
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e cb4.chrX              13548006 1038 - 21540570 I
e caeSp111.Scaffold629    274529 132 - 33334924 I
e caeRem4.Crem_Contig0   4329516 173 +  4500979 I

a score=89.000000
s ce10.chrX              2078115 12 + 17718866 AAACACATACTG
s caePb3.Scfld02_0       2834655 12 -  4147112 GAACAGGAATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e cb4.chrX              13548006 1038 - 21540570 I
e caeSp111.Scaffold629    274529 132 - 33334924 I
e caeRem4.Crem_Contig0   4329516 173 +  4500979 I

a score=600.000000
s ce10.chrX              2078127 2 + 17718866 CC
s caeRem4.Crem_Contig0   4329689 2 +  4500979 CC
i caeRem4.Crem_Contig0  I 173 C 0
s caePb3.Scfld02_0       2834667 2 -  4147112 CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e cb4.chrX              13548006 1038 - 21540570 I
e caeSp111.Scaffold629    274529 132 - 33334924 I

a score=600.000000
s ce10.chrX              2078129 1 + 17718866 G
s cb4.chrX              13549044 1 - 21540570 G
i cb4.chrX              I 1038 C 0
s caeRem4.Crem_Contig0   4329691 1 +  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2834669 1 -  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I
e caeSp111.Scaffold629    274529 132 - 33334924 I

a score=-4287.000000
s ce10.chrX              2078130 30 + 17718866 ----TTCTTTTTTTTTTT--CTCAATTGACAACTGA---
s cb4.chrX              13549045 35 - 21540570 ----TTCTTcgcttttttgtttcaagaGAGGAGGAGCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4329692 27 +  4500979 ----ttct----ttttctg-ttcaagTGAAAACTAG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    274661 30 - 33334924 Ttcgttcgttttttctctg-ttcg------aaagaa--a
i caeSp111.Scaffold629  I 132 C 0
s caePb3.Scfld02_0       2834670 29 -  4147112 TTCCTTCA-------TCCG-Ttcgggaaaagagaaa--a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    41888 1096 -   435062 I

a score=90463.000000
s ce10.chrX              2078160 130 + 17718866 GAAAATTGAA--TGTAAGT--GAGGGCAAAG------TGTGC--------ATCATGCAAAAGACAATCAGAAG--TTCTCATGGACACAT-GTTTTATAAATTAC-TTTTCTCTC------------TTCTTTTTCGACTCCGGTGCAGTTGTTCCATCGATTC
s cb4.chrX              13549080 149 - 21540570 GGCAATTGGATGTGTTTGT--GAGTG---AG------TGTCTAACTCA--GCAGTGCAGAAGACAATCAGAAAGTTTTTCATGAACACATGGCTTTATAAATTACGTTTTTTCTCGTTCACTTGTTGCT-TCTTTCGACCTC-GTGCAGTTGTTTCATCGATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4329719 139 +  4500979 AGAAATTGGA--TGTTTGT--GTGTG---AGTGCCTCTGTCTATCTCCGTGCAATGCAGAAGACAATCAGAAG--TTCTCATGAACACAT-GTTTTATAAAttac-ttttctctc------------tt-cttttcgacCCC-GTGCAGTTGTTTCATCGATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    274691 125 - 33334924 ataaattgaa--tgtCTGT--GAGTG---AG------TGTGT--------TGTGTGCAAAAGACAATCAGAAG--TTCTCATGAACACAT-GTTTTATAAATTAC-ttgtctctc------------tt--ctttcaactcCCGTGCAGTTGTTTCATCGATTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2834699 129 -  4147112 agaaattgga--tgTTTTTTAGAGGA---AG------AGTGT--------GCCATGCAAGAAACAATCAGAAG--TTCTCATGAACACAT-GTTTTATAAAttac-ttttctctt------------ctcccctTCGACCCCGGTGCAGTTGTTTCATCGATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    42984 115 -   435062 GAAAATTGGA--TGT------GAGCG---AG------T------------GTCAAGCCAGAGACAATCAAAAG--TTC-CATGAACACAT-GTTTTATAAATTAC-TTTTCTCGT------------TT---TCTCGACCTCTGTGCAGTTGTTTCATCGATTC
i caeJap4.Scaffold18190 I 1096 I 1300

a score=25956.000000
s ce10.chrX              2078290 52 + 17718866 --TCCTTGTCAAAGCAAATAAATCGTAAAATCTC----------TCACACGGATAAATG-AAGAA-----
s cb4.chrX              13549229 64 - 21540570 ATTTCTTGTCAAAGCAAATAAATCGTgaagcttctttttcttcttttgagagatagatg-aaaaa-----
i cb4.chrX              C 0 I 695
s caeRem4.Crem_Contig0   4329858 50 +  4500979 --TTCTTGTCAAAGCAAATAAATCGTGAAGGCTC------------AAAGGGATAGAtg-aagaa-----
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold629    274816 56 - 33334924 A-TTCTTGTCAAAGCAAATAAATCGTGAAGCCTC-------------GACGgatatatgaaaaaaagaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2834828 55 -  4147112 A-TTCTTGTCAAAGCAAATAAATCGTGAAGGCTC-------------AACGGATatatg-aaaaacgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I

a score=2426.000000
s ce10.chrX              2078342 36 + 17718866 GAGCAGCTTTGAAAAATGATTA-CGATAACCTGAGTT-------------------
s caeRem4.Crem_Contig0   4329914 52 +  4500979 aagtgGGGTTGAAGGA-GGTCG---CTCGATTAAATTTATTGCTTTACTCAGTCAT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629    274872 35 - 33334924 tagtgGAGCTGGAGGA-GGTCG-CGACCGATTGAATT-------------------
i caeSp111.Scaffold629  C 0 I 50
s caePb3.Scfld02_0       2834883 36 -  4147112 aagtggAGCTGAAGGA-GGTCGTCTCTCGATTAAATT-------------------
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I

a score=1884.000000
s ce10.chrX              2078378 46 + 17718866 CTTTCGTTGAAAAAAAATGGCCTCGATTATTTTCATTTTTACGAGC
s caeRem4.Crem_Contig0   4329966 33 +  4500979 TTTTCGT-------------GCTCGTTTCTACTCATTTTTCCGATt
i caeRem4.Crem_Contig0  C 0 I 11
s caePb3.Scfld02_0       2834937 33 -  4147112 TTTTCCT-------------CCTCGTTTATATTTTTCCCTCtaact
i caePb3.Scfld02_0      I 18 I 1
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeSp111.Scaffold629    274907 50 - 33334924 I

a score=28910.000000
s ce10.chrX              2078424 172 + 17718866 ACGACTTACCCATTAAAATTAAAATGAGCA--TGTTTGATT-TGTCTTATCCCAATGAAAGCGGAAAACCTAATCCTCCAACAAGCTTGACATATTATTCTTGGGTAAACAAAAAGCTGAAACAGTTCCTCTATTTTTTTTTGTTTTTCATCTTTTCTTTG-----AAA---CCCGTTTTGAT
s caeRem4.Crem_Contig0   4330010 161 +  4500979 aaaactgAACTCATTAAACCAAGatgaaaa-gtgttttattaCCCCTTAACCGACC--------AAAAcctatttctcaaaaa-gctTGACATATTATTCCAGTGTAAACAAA-------CACAGAagacct--tttttttcatttctcttccctttttgggcttagaa---cactttttcat
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold629    274957 158 - 33334924 aaaactgaaCTCATTaaaccaaaatgaaaatgtgttttatT-TCTCTCAACCGACC---------AAAcctatttctcaaaaacgcTTGACATATTATTCTAGTGTAAACAAAAAA--GCGGCTAGTATTCT--gttctttccctttttttccgt-----------GAATACCCTTATTTCTC
i caeSp111.Scaffold629  I 50 I 3
s caePb3.Scfld02_0       2834971 148 -  4147112 aaaactgaactcattaaaccaaaatgaaaa-gtgttttatT-TCCTCCAGCCGACC---------AAacctatttctcaaaaacgcTTGACATATTATTCCAGTGTAAACAAA-------GACGagtgtttt---ttcttccgtttcatTTTGCT-----------GAA---CCCGGTTTCTT
i caePb3.Scfld02_0      I 1 I 366
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I

a score=273.000000
s ce10.chrX              2078596 1 + 17718866 T
s caeRem4.Crem_Contig0   4330171 1 +  4500979 t
i caeRem4.Crem_Contig0  C 0 I 158
s caeSp111.Scaffold629    275118 1 - 33334924 T
i caeSp111.Scaffold629  I 3 C 0
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I

a score=555.000000
s ce10.chrX              2078597 6 + 17718866 ATTCAT
s caeSp111.Scaffold629    275119 6 - 33334924 ATTCAT
i caeSp111.Scaffold629  C 0 I 75
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeRem4.Crem_Contig0   4330172 158 +  4500979 I

a score=0.000000
s ce10.chrX              2078603 413 + 17718866 CGGATGGAGATTGGTTTCTTAAAAAAATTTCCATTAATGAGAAAATTTCCAAACTGAACTCTTGAACTTTCGATTTGAAGATCTGGAATTTTAGATTTTATTCTAATGTTTTTTTTTTCAGTTAAGCGAAATTTAAATATTTTAACATTTCTGAAAAAATTTTACTTATAAAATCTAATACTTCAATTTTGAAAAAAAAAAATTCCAAAAACTACTGATATATATTTTCAAATAATTTTTTGTTTATTAGCTCTTTGAAAAAAATATAACGAAGTCATTTTTTTTAGATATTGAAGCGTATTAAGTTGCCAAAAACTACATCGATTACTACACACTTTTAATATGAAAACTTACGCTTCTTCCATTAATAACACACGTCATGTTCTTAGTATTGAGATATACATTACTCACTT
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeSp111.Scaffold629    275125  75 - 33334924 I
e caeRem4.Crem_Contig0   4330172 158 +  4500979 I

a score=638.000000
s ce10.chrX              2079016 62 + 17718866 TAATCCCAAACTTCT-AATTTCCGATCCCAATCGGAGCGTTTCATATGTCG--CTCCACTGACTT
s caeSp111.Scaffold629    275200 61 - 33334924 TAACTTCAAACTGCTGAAGTTAATATTCCGATc----cgtttcaaatttcaattttcagcaaacc
i caeSp111.Scaffold629  I 75 C 0
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeRem4.Crem_Contig0   4330172 158 +  4500979 I

a score=8386.000000
s ce10.chrX              2079078 71 + 17718866 CCGATTT--GAAAAGCATGGGCA--------TTTTGCTTCATTATACGAAGTGGAGGCGTAATTAGGTTAGAACGTCAGTT
s caeRem4.Crem_Contig0   4330330 81 +  4500979 ccaattctagaaaaatgagagcGGAGAGCTATTTCGTCTCTTTATCCAAAATTGAATGATAATTAGGTTTGAACGTCTGCT
i caeRem4.Crem_Contig0  I 158 I 137
s caeSp111.Scaffold629    275261 71 - 33334924 --ctttttggaaaattgagaGCT--------CTTTGTCTCATTATTCGAAATTGAATAGTAATTAGGTTTGAACGTCTGCT
i caeSp111.Scaffold629  C 0 I 295
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I

a score=0.000000
s ce10.chrX              2079149 426 + 17718866 TGATCCATCTCCAATTTTTTCCTCATTTTTTATGATGACAATTGTTTGGAGTATAATAATTCTTAAAGGTGGAGTAGCGCGAGTTGATATGTTGTAGAAATGACAAAATATCATAGTAAAAATTTAAAAGAATTGACAGTCAAAAAATGACAATCTCTGAGTTTTTGCAACTTAAAAAAAAATCATAGCACTGTCAAATCCATACAGTGTTTGAATATTAATACTTGAAACATAAGTTGGCCTTAAAATTGGAAAAAGTTGTTTCTTTAATCGTTTTCCATAAAAATGACAAAAACCTAggtaattgtggtaccatatgcatagttttaagcaattttcccacATGACCTATGAATATAAAAATAATATAAAACGTTAGACTAAGTAATTCCAGACAAAAACGTAGTGTTTCTTTATAGTGATCGT
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeSp111.Scaffold629    275332 295 - 33334924 I
e caeRem4.Crem_Contig0   4330411 137 +  4500979 I

a score=269.000000
s ce10.chrX              2079575 42 + 17718866 TCGATTAATCATCACAAATCTCCATATGATAATCT-TCCGCCG
s caeRem4.Crem_Contig0   4330548 43 +  4500979 TTGTCTAGCCATCAAAAATCTTTATAGTTCAACAGATATGGCT
i caeRem4.Crem_Contig0  I 137 C 0
e caePb3.Scfld02_0       2835119 366 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeSp111.Scaffold629    275332 295 - 33334924 I

a score=5747.000000
s ce10.chrX              2079617 117 + 17718866 TTTTTAACCATTCATTGGCTTTTCTTCGGCTCAGTTTGTCATCACCTCAG-----ATATCCAG---------CCTCCAGCTGCCCGCTAATCTTGATTTCTTCTCTTACTTGTTTTTTTTTCGACGATAAT
s caeRem4.Crem_Contig0   4330591 108 +  4500979 TTTTGAAtcatcttttccttttcc---------actGGTTATTATCTAAG-----AGATCCAATGCATATCACATCCAGCTGTCCGCTAatctc--tttc-cctttttcctctttttttttttat------
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       2835485 102 -  4147112 ttttttATCATCCTTTGGTTTTTT---------GCTGGTCatcaactaagaaaaaaaatccaacgcATATCTTTCTCATCTGTCTACtaatctc--tttc-----tttcttcttcccc-------------
i caePb3.Scfld02_0      I 366 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13549293 695 - 21540570 I
e caeSp111.Scaffold629    275332 295 - 33334924 I

a score=-437.000000
s ce10.chrX              2079734 17 + 17718866 TCTGA----TTCTAATTCCAC
s cb4.chrX              13549988 17 - 21540570 tctcA----TTCTCCCTCCAT
i cb4.chrX              I 695 C 0
s caeRem4.Crem_Contig0   4330704 21 +  4500979 tctcaatatttttacCTTCCC
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0       2835587 12 -  4147112 --tca-TAATTCTAC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeSp111.Scaffold629    275332 295 - 33334924 I

a score=46030.000000
s ce10.chrX              2079751 249 + 17718866 ----------------------------------CTTTTCTCTTGTCTTCTAATTCATTGTTA----TTCAATTTTAATAGTCATGGTTGCTCGGTTTGTAAATGTCACAACGCACAGGTTTCACATGAAGCTGCCAGAATCATCAGTGGCATCT---TCCAC---AACGGATAGCACAGCCGGCTTT------GTTGAGATGAATCTGACAACAACAGTATGGCCGAGAAAAAAAGTTGGAGGAGTTAATCCTTTTCTTGGTATGTTTTGGAAAATGGCTAAATAT---CATAGTAAAACT--------------------------
s cb4.chrX              13550005 237 - 21540570 -------------------------------CCATTTATCTACCTTCCTATTCATCGCTTATA-A--CTCCATTATC-----------TGCCCA--CCTTTAATGAAATCATGCACAGATTTCACATGAAGCTGACCAGATCGTCTATGGCATCTGTCACGGTCACAACGCCGACTCCAACAGATCTTCTTAAcgagaatctgaatttcacgACAACAGTGTGGCCGAAGAAAAAGGTCGGAGGTCTAAACCCGTTTCTCGGTAAG---TGGAATTTCCTTAGACAT-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4330725 243 +  4500979 -------------------------------CATTTTATCAATCTGGC-ATTAACTTCTgttatt--cttcatttta-----------tgC-----ATTCAAATTAAACCATGCACAGATTTCACATGAAACTAACCATATCGTCAATGGCGTCT---ACTGT---AACACCAACACCATCTGATCTCTTTGATAAAGATTTGAATCTCACAACAACAGAGTGgccaaagaaaaaagttggcGGATTGAATCCTTTTCTCGGTAAG---TGAAACACGCCTAGACATGTGCATACTTAAACT--------------------------
i caeRem4.Crem_Contig0  C 0 I 186
s caeSp111.Scaffold629    275627 259 - 33334924 cttttcatttatcaCATAACTCTACATTGGCCGATTTATCAATCTTaattctttctcttgtta-T--CTCTA-------------------------------------CATGCACAGACTCTACATGAAAATAACGCATTCCACGATGGCCTCT---TCAGT---AACTCCAGTTTCAACAGAT---------GATGCTTTGAATTTGACAACGACGGCTTggccaaaaaagaaagtcgGCGGATTGAACCCTTTTCTCGGTAAG---TGAAACAT-TGTAGACATGTACATACTTAAAGTGACct----------attcttctctc
i caeSp111.Scaffold629  I 295 C 0
s caePb3.Scfld02_0       2835599 258 -  4147112 -------------------------CTTCGCCAGTTTATCACTTCTAATTCTTTGCCTTGTTA-TTCTTCTATGA---------------------TTTTGAATGGAACCATGCACAGATTACATATGAAACTGACGAAATCTTCAATGGCATCT---ACTGT---GACTCCAATTCCAACAGAT---------GACAGCATGAATCTGACGACGACAGAATGGCCAAAGAAAAAAGTCGGAGGGCTGAACCCTTTTCTCGGTAAG---TGAAACAT-TCTAGACATGTACATACTTAAACTGACCTCACAagaacaattct----tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I

a score=-1396.000000
s ce10.chrX              2080000 21 + 17718866 --------Ttttggaaattgtgtaggaag
s cb4.chrX              13550242 17 - 21540570 GTACATAGTTTAGCAGA------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    275886 16 - 33334924 --------ttttgcaAGTGGGATG-----
i caeSp111.Scaffold629  C 0 I 65
s caePb3.Scfld02_0       2835857 14 -  4147112 --------ttttgcaaactagA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeRem4.Crem_Contig0   4330968 186 +  4500979 I

a score=-534.000000
s ce10.chrX              2080021 19 + 17718866 tggcaaaaacctggtaatt
s cb4.chrX              13550259 12 - 21540570 GGACACAATTCT-------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2835871 19 -  4147112 TGATGTCACGCTAGTAATT
i caePb3.Scfld02_0      C 0 I 120
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeSp111.Scaffold629    275902 65 - 33334924 I
e caeRem4.Crem_Contig0   4330968 186 +  4500979 I

a score=-317.000000
s ce10.chrX              2080040 66 + 17718866 gacactttttgactgtcaataaaaattatcaaaaaatgtttgggaagttattcta--tgata----------tttggg
s cb4.chrX              13550271 65 - 21540570 ----TTCCTTGTTTG---------AGGAGTAAGTGATGTCAAGAAAGAGATTCTacttgacagaaaaaaaattttgaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2835890 120 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeSp111.Scaffold629    275902 65 - 33334924 I
e caeRem4.Crem_Contig0   4330968 186 +  4500979 I

a score=-3472.000000
s ce10.chrX              2080106 62 + 17718866 cattttggcaccata--gcagaggtttcaacaattttcccactggcgGAAACGATTTAGAAAAC-----------
s cb4.chrX              13550336 42 - 21540570 ---cgcGGTGACACATTCCTTCGAGATCCGTCACTTTC-------------------AGGGAAC-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    275967 49 - 33334924 cattcaagTGGCACA--CCCGAGGGACCAATAACGTC------------------------AACTAGTATTCTGC
i caeSp111.Scaffold629  I 65 C 0
e caePb3.Scfld02_0       2835890 120 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeRem4.Crem_Contig0   4330968 186 +  4500979 I

a score=-753.000000
s ce10.chrX              2080168 3 + 17718866 GTT-
s caeRem4.Crem_Contig0   4331154 3 +  4500979 GCC-
i caeRem4.Crem_Contig0  I 186 C 0
s caeSp111.Scaffold629    276016 3 - 33334924 -TCT
i caeSp111.Scaffold629  C 0 I 5
e caePb3.Scfld02_0       2835890 120 -  4147112 I
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e cb4.chrX              13550378 0 - 21540570 C

a score=13514.000000
s ce10.chrX              2080171 35 + 17718866 TTCTGCCAGCACTTTTGGCTTGCATAACTGATGAA-------
s cb4.chrX              13550378 38 - 21540570 ----TCTAGCACTTTTTATTTGCATAACTAATGCCTTGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4331157 42 +  4500979 CTTTTCTAAAACCTTCGATTTGCATATCTaatggaaagaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    276024 35 - 33334924 AGTCCCTAGCACTTTCGATTTACATATCGGATGAA-------
i caeSp111.Scaffold629  I 5 I 16
s caePb3.Scfld02_0       2836010 35 -  4147112 CTTTTCTAGCACTTTCGATTTGCATAtctgatgaa-------
i caePb3.Scfld02_0      I 120 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I

a score=-3422.000000
s ce10.chrX              2080206 5 + 17718866 TATGT--
s cb4.chrX              13550416 5 - 21540570 --AGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4331199 5 +  4500979 --taaat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2836045 5 -  4147112 -aagaa-
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18190    43099 1300 -   435062 I
e caeSp111.Scaffold629    276059 16 - 33334924 I

a score=2800.000000
s ce10.chrX              2080211 14 + 17718866 ----ACCTGTTAGAATTG
s cb4.chrX              13550421 18 - 21540570 GGGGCTCCCGGAAAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4331204 18 +  4500979 gggCCTCTGCCAGAAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    276075 14 - 33334924 ----ACCTGTCAGAAAAG
i caeSp111.Scaffold629  I 16 C 0
s caePb3.Scfld02_0       2836061 14 -  4147112 ----acCTGTCAGGAAAC
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18190    43099 1300 -   435062 I

a score=254329.000000
s ce10.chrX              2080225 420 + 17718866 CAATAAATCATTT--CTCTAATGCTACCTTTGCGTGGAAAACGGACATTTGGCCTCTAT---CTCACC---------------CCCACTATTTGAGATCTTAGGAAT-----------------ATTTCTCGCCTT---------ACTTCATTCC-TCAAAGAAAATAGACATGGTTGCAGACGAATCTTCTGACGTCTTCTTCCTGGTATCTGTTGTTGCGCCGCTTTTATTCTGCTGTTTTGCAATTTTTGTCTGTGCTCTGAACAGTATTTGGAAGACAAGAAGTAAACTTGAGTGAGTCAAT---GCT------TAATTATTCTTGAA--AT--AAATTATTT-------TTATTTTCAGAGCTTTAACGCAAGTTGCAAAACAACGCGAACCGACAGAGTACACCGAATTCACAATTGACCTGACAACCAAAATGGACTCGTGTGTAGAACTTTCTTCACCACAGATCAGTTCTAAAGAGGT
s cb4.chrX              13550439 454 - 21540570 CAATAAATCATCTCACACCAATACTACCTTTGCgtgaaaaatgcgaattt---cttttt---cttccc------caAGTCCAGCCCACTCTTTGAGATCTTAGATAT----------TTATTTTCTTGTCCTCCCCCTATATCAGCCACCATTCCGTCCAAAATAATGGCTGCGGTTGCAGACGAATCGTCTGATGTCTTTTTCCTGGTTTCTGTGGTGGCACCGCTCCTATTCTGCTGCTTTGCTATCTTTGTCTGTGCTCTGAACAGCATCTGGAAGACCCGCAGCAAACTCGAGTGAGTCATT-----T------TGACCTTTTATCCATAATTAAAGTTTCTCGACgatatcattttcagagctcTGACTCAAGTGGCCAAGCAGCGTGAACCAACCGAGTACACTGAATTTACCATTGATCTTACAACCAAAATGGACTCATGCGTCGAGCTATCATCTCCACAGATAAGCTCAAAAGAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4331222 441 +  4500979 CAATAAATCATCC--AGCTAACACTACCTTTGCGTGGATAGT---CATTT---TATGAT---TTCATT------CA--------TTCCTCTCGAAGATCTAAGAAATAACTGCCggctttttctattttttgtcttctgt-----CCAATATTCTTCCTAAA--AATGACTGCGGTTGCAGACGAATCTTCTGATGTCTTCTTCCTGGTATCTGTTGTTGCACCACTTCTATTCTGCTGCTTTGCAATATTTGTCTGCGCTTTGAATAGCATCTGGAAGACCCGAAGCAAGCTAGAGTGAGTCATTCAGTCT------CAACATTTGCTC----GTTAAAAT---GCAACTAT-CCTTTTTCAGAGCTCTAACTCAAGTTGCTAAACAACGGGAGCCAACGGAATACACAGAGTTCACTATCGACCTGACAACCAAAATGGATTCGTGTGTAGAGTTGTCATCTCCACAAATCAGTTCAAAAGAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    276089 445 - 33334924 TAATAAATCATCT--GACTAATACCACCTTCGCGTGGATAAGGCGCATTT---CTTGAC---TTCACCGGCACACGACGCCAGCCCCCTC---AAGATCTCAGA---AATATTCT--CCCCTTTATTTTCTACCCTCTA------TCATCATTCCGTCCCTAAATATGGCAGCGGTTGCAGACGAGTCAtctgacgtcttcttcctGGTATCTGTTGTTGCACCGCTTCTATTCTGCTGTTTTGCAATCTTTGTTTGCGCTTTAAACAGCATTTGGAAGACACGGAGCAAACTTGAGTGAGTCact-----t------tgtttcttcattct--aT--ATATGGTTTCA-----TGAGTTTCAGAGCACTGACTCAAGTCGCAAAGCAACGTGAACCGACTGAATACACCGAGTTCACCATTGATCTCACAACCAAAATGGACTCTTGCGTGGAATTGTCCTCGCCTCAAATCAGTTCCAAAGAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2836075 448 -  4147112 TAATAAATCATTT--TGCTAATACTACCTTTGCGTGGATATCAAGCATTT---CTCGGCGCTTTCCCT-----------CCAGCCCCCAC---ACGATCTCAGatattattttct--attttctattttctacctTCTG------CCATCATTCCGTCCCAAAAAATGACAGCGGTTGCAGACGAGTCGTCTGACGTCTTCTTCCTGGTATCTGTCGTTGCACCGCTTCTATTctgctgttttgcaattttcgtCTGTGCATTGAACAGCATCTGGAAGACCCGGAGCAAGCTCGAGTGAGtcatt-----tttgaactattttttagtact--tttaattttttttaa-----actttttcagagctcTCACTCAAGTTGCAAAACAACGTGAGCCGACTGAGTACACGGAGTTCACCATTGATCTCACCACCAAGATGGATTCGTGTGTCGAGTTGTCATCCCCACAAATCAGTTCCAAAGAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    44399 413 -   435062 CGATAAATCATTT--CTCTAATA------TAGCGTGAAGAACTGACATTC---CCCATA---CTCTGC----------------CAGCTA---CTGAGCTGAAACAA--------------CCTCTTGTCCAC------------TGAAACTTCTTCACATGATTATGTTATCTTTTTCAGAGGAAGGCTCCGAtgtattttttctcgtttCGGTAGTCGGACCACTATTATTCTGctgttttgcaatttttgtctGCGCACTGAATAGTATATGGAGAACTCGCAGCAAACTTGAGTAGGTTGCT-----C------AAATGTTTTCTCTG--ATTAGactttagcaaaaa--aaaattcaagagcACTGACCCAAGTGGCAAAGCAACGAGAGCCAACCGAGTACACTGAGTTTACCATCGACTTGACAACCAAAATGGATTCGTGCGTTGAGCTGTCTTCTCCGCAGATCAGCTCAAAAGAAGT
i caeJap4.Scaffold18190 I 1300 I 840

a score=910.000000
s ce10.chrX              2080645 1 + 17718866 A
s cb4.chrX              13550893 1 - 21540570 A
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   4331663 1 +  4500979 A
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold629    276534 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2836523 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    44812 840 -   435062 I

a score=-155.000000
s ce10.chrX              2080646 1 + 17718866 T
s caeSp111.Scaffold629    276535 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 568
s caePb3.Scfld02_0       2836524 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13550894 38 - 21540570 I
e caeRem4.Crem_Contig0   4331664 45 +  4500979 I

a score=305.000000
s ce10.chrX              2080647 41 + 17718866 G--TTGTAGTCGCTTTACA-GTATacggttctaagtatttagga
s caePb3.Scfld02_0       2836525 44 -  4147112 GGATTACAGCTTTTTTGCatatatacattttttcttttccagga
i caePb3.Scfld02_0      C 0 I 881
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13550894 38 - 21540570 I
e caeSp111.Scaffold629    276536 568 - 33334924 I
e caeRem4.Crem_Contig0   4331664 45 +  4500979 I

a score=0.000000
s ce10.chrX              2080688 675 + 17718866  
e caePb3.Scfld02_0       2836569 881 -  4147112 I
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13550894  38 - 21540570 I
e caeSp111.Scaffold629    276536 568 - 33334924 I
e caeRem4.Crem_Contig0   4331664  45 +  4500979 I

a score=182.000000
s ce10.chrX              2081363 2 + 17718866 TA
s caeRem4.Crem_Contig0   4331709 2 +  4500979 TA
i caeRem4.Crem_Contig0  I 45 C 0
e caePb3.Scfld02_0       2836569 881 -  4147112 I
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13550894 38 - 21540570 I
e caeSp111.Scaffold629    276536 568 - 33334924 I

a score=5581.000000
s ce10.chrX              2081365 261 + 17718866 ATTTCAGGAATCCGTTCTGCTGTAAATTTCATTAGACA-----------------------ATGTGTTCTTATGGACTGATTTCTACCGG-TTTTTTTTTCAACCTGAAA--AAGC-------TTTGTTCTCATTCCCTGTATATTATCCTTCTCGTTTT--TAAATCTCATGTTTTAACGATCTAAAAATTATTTATCATGATGGATAGTATTACTGAACTGGTTTCCCTGTGTTTATGTAGT------TAATGGTCTATGTTGTAAATATTTGGAAAATTTTAAATATGCCAAATATTAA
s cb4.chrX              13550932 218 - 21540570 ATTTCAGGAATCAGTTTTGCTGT-----------GACA-----------------------AAGTCTAGTTATGCACTGATTTCTACCGG-TGTGGCT----GTGTCGAACCAACA-------CTCGTCTTCATTCCTTTTCATGtatttatgtattttttctagaacac--TCCCC----GCTTAG--------------AAGGAATCGTCTTCCTGAActggttttga-attttcttgtAGTATCAGACAGGGA--AGAGTTGTA-AAACTT-GTATATATTAAATA-------------
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   4331711 270 +  4500979 ATTTCAGGAATCAGTTTTGCTGT-----------GACATGTATCCCAACGAGTGTGTATTTAAGCC----TATGCACTGATTCCTACCGGTTGTCACTTCCAATCTGGAGATAAAATATTGTTCCTGtctacatttttctctttctctctctctctctcgactaaatctcagttttt----gtttagaaatttCTAATAGAAAGGAAT-GTTTTCCTGAACTGGTTTTGA-ACTGTCATGTAGT------taaaaa--tatgttgtatatactt-gaaaataaaacataaa--aattatcga
i caeRem4.Crem_Contig0  C 0 I 194
e caePb3.Scfld02_0       2836569 881 -  4147112 I
e caeJap4.Scaffold18190    44812 840 -   435062 I
e caeSp111.Scaffold629    276536 568 - 33334924 I

a score=1009.000000
s ce10.chrX              2081626 43 + 17718866 TTTTATAAAGAACTTTTGGTTTTCAAGACTTGTTCAATAAATT
s cb4.chrX              13551150 37 - 21540570 ------AACATGcttttcgtttttgaatttttttcaagaattt
i cb4.chrX              C 0 I 704
e caePb3.Scfld02_0       2836569 881 -  4147112 I
e caeJap4.Scaffold18190    44812 840 -   435062 I
e caeSp111.Scaffold629    276536 568 - 33334924 I
e caeRem4.Crem_Contig0   4331981 194 +  4500979 I

a score=0.000000
s ce10.chrX              2081669 1102 + 17718866  
e caePb3.Scfld02_0       2836569  881 -  4147112 I
e caeJap4.Scaffold18190    44812  840 -   435062 I
e cb4.chrX              13551187  704 - 21540570 I
e caeSp111.Scaffold629    276536  568 - 33334924 I
e caeRem4.Crem_Contig0   4331981  194 +  4500979 I

a score=250.000000
s ce10.chrX              2082771 5 + 17718866 ATAGT
s caeSp111.Scaffold629    277104 5 - 33334924 ataga
i caeSp111.Scaffold629  I 568 C 0
e caePb3.Scfld02_0       2836569 881 -  4147112 I
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13551187 704 - 21540570 I
e caeRem4.Crem_Contig0   4331981 194 +  4500979 I

a score=292.000000
s ce10.chrX              2082776 5 + 17718866 AACAT
s caeSp111.Scaffold629    277109 5 - 33334924 aaaga
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2837450 5 -  4147112 AAAGT
i caePb3.Scfld02_0      I 881 C 0
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13551187 704 - 21540570 I
e caeRem4.Crem_Contig0   4331981 194 +  4500979 I

a score=3199.000000
s ce10.chrX              2082781 31 + 17718866 GGAAAAAAAGTAGCGGGGCAGA-GAATCGACA--
s caeRem4.Crem_Contig0   4332175 30 +  4500979 GAATAGAGAGTAGTAGAGAAGT-GGA-AGGCA--
i caeRem4.Crem_Contig0  I 194 I 5
s caeSp111.Scaffold629    277114 32 - 33334924 gaaagaggagtAGTAGAGAAGT-GGA-ATGCATA
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0       2837455 30 -  4147112 G---GAAGAGTAGTAGAGAAACGGGA-AGGCATA
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18190    44812 840 -   435062 I
e cb4.chrX              13551187 704 - 21540570 I

a score=20731.000000
s ce10.chrX              2082812 51 + 17718866 AAACTGGTCAGGTGTAATTTGGGCATGAAATGCGCGCCTCTTCAGTCAGGC---
s cb4.chrX              13551891 54 - 21540570 AAACTGGTCAGGTgtaatttggaaaaatgcGCGACGCCTTTATAGAAGGGTGGG
i cb4.chrX              I 704 C 0
s caeRem4.Crem_Contig0   4332210 44 +  4500979 AAACTGGTCAGGTGTAATTTGGAA-------TTGCGCCTCTCGGTGAGGGC---
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629    277149 50 - 33334924 AAACTGGTCAGGTGTAATTTGGAGAGAAATTGCGCGCCTCTAG-TCAAGGC---
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0       2837488 51 -  4147112 AAACTGGTCAGGTGTAATTTGGACATGAATTGCGCGCCTCTTTCTGAGGGC---
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18190    44812 840 -   435062 I

a score=-6071.000000
s ce10.chrX              2082863 35 + 17718866 CTTTCATTCTTCCTTCTTTTCAACCATATTTCATT
s cb4.chrX              13551945 29 - 21540570 CTTCCTTT------TGTGGGAAATCCTCTTCAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4332254 35 +  4500979 TTtcctttttcacattttggcAGTCTTTCACAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    277199 16 - 33334924 TTCCCCTTTT-----------AGGCCA--------
i caeSp111.Scaffold629  C 0 I 14
s caePb3.Scfld02_0       2837539 34 -  4147112 TTcccattttccacttttggCAGGCTGATTCATT-
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold18190    45652 28 -   435062 ctttcattctctccttctttctttcttt-------
i caeJap4.Scaffold18190 I 840 C 0

a score=-9975.000000
s ce10.chrX              2082898 45 + 17718866 CTCGCGCTTCAGCCA-TTTTGCACTTATTCACAGAATTTA-GACTTC------
s cb4.chrX              13551974 35 - 21540570 -----GATTCATTCAGTTTAGTTCCTTTTCTGGAAACTTA-------------
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   4332289 33 +  4500979 CGCTCGATTCTTTCAGT--------TATTCAGAAGACACAC------------
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold629    277229 28 - 33334924 TGTGTGATTCATTGA----------TTTCCACCACATA---------------
i caeSp111.Scaffold629  I 14 C 0
s caeJap4.Scaffold18190    45680 40 -   435062 -----ctttcttcca-aatctcttttcATCACATAACACA-------AATTCC
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2837573 44 -  4147112 I

a score=17781.000000
s ce10.chrX              2082943 101 + 17718866 --------ACATG----TGTTTCTTCCACTCTTTCT--TCTA-----------TTTCTCTTGTATCAAATTTCAATGC--------CCAAAAGAGA-CA------------------------------------GCCTTTCTGATTCGAGCAAAAGATTGGT----GGAGCATC
s cb4.chrX              13552017 117 - 21540570 --------AAGcgttgttgtttct-------ttttcccaCT------------GCTCCCTAGTATCAAATTTCATCCCCTTTTCTATCCAAAAAT--CGCGAGAAGAAAG-------------------------TTGTGTCAGATTCGGACAATAGATTGGA----GGAGCATC
i cb4.chrX              I 8 I 2911
s caeRem4.Crem_Contig0   4332339 119 +  4500979 --------AGAcg----tgtttct-------tttct------------------ctctctagTATCAAATTTCAATGC--------TCAAAAGAG--CGCACCAATAGTGTCTAAGACTCGCATCCCttccacttttctttttgatttgaacAAAAGATTGGA----GCA-----
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold629    277257 119 - 33334924 --------AGATG----TGTTTCT-------TGTCT-------------------GTTTTcgtatcaaatttcaatgc--------tcaaaagaga-aaaggcaCTAGTGTCTAAAACCTCCGgcc---tcattttttttcttgatttgaaCAAAAGATTG------CGAGTTGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2837617 122 -  4147112 --------Agatg----tgtttct-------ttttt--tct------------tgtttttggtATCAAATTTCTATGC--------TCAATAGAGAGAAAAGCACTAGTGTCTAAGACTCCCA--------CTTTTCTTTCCTGATTTGAACAAAAGATTGGA----AGAGTTGC
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold18190    45720 122 -   435062 ATGGTCTTGGAAT----TGCCACT-------TTTCCCTTTTCGGGTTTCCATTTTCTCCCTATATCAAATTTCGATGC--------TCCAGAGAG--CACCAA--------------------------------GCCTTCCTGATTTGAACAAAAGATTGCAAGTTAGAGCATC
i caeJap4.Scaffold18190 C 0 C 0

a score=3273.000000
s ce10.chrX              2083044 44 + 17718866 AAGCTAAACATGGCAG-----TTCCA------TTTCCCATGT---------TATTTTTTATATT
s caeRem4.Crem_Contig0   4332458 34 +  4500979 --GCTATACAT-GCAG-----TTCCA------TCTTTCATGA---------CATTTT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    277376 40 - 33334924 -CCCTTTACAT-GTAGTTCGTTTCCA------CTTTTCATGA---------CATTCA-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2837739 36 -  4147112 TCTCTATACAT-GCAG-----TTCCA------TTTCTCATGA---------CATTTT-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    45842 48 -   435062 GAGATGAA-AT-GCGG-----CTGCACAACTCTTTTTCATGATTCCCTTTCCATT---------
i caeJap4.Scaffold18190 C 0 I 417
e cb4.chrX              13552134 2911 - 21540570 I

a score=19574.000000
s ce10.chrX              2083088 261 + 17718866 GAAAAAGAAGACCTCTGGG---TC---ATTTCCTCTCGTTTCCCATTGTCTGACAGC--AAATAAATGGCGCGGTAGTTGAGTTCAGTTTAGTTCATTTCCCGTGATACGTCAAATCCTTTTTTTTTACTCTTCTTTTTGCGGTGGTCTCT--GTTTGGGAACGATTG--CATGTGAAAATGTTCTTATTGTGCCAGTATTG----TTT------CCTGAAAAT-----------TGTTTCCAAAAATTAATACATAATAAATGAGAAAATACACCGAGCT-ATTTGACCACCTG
s caeRem4.Crem_Contig0   4332492 241 +  4500979 ---ATGGGTGCCCTCTGGGCAATCTGCTTTTGTTTTTGGTTCCCATCGTTTGacaga--aaataaat-gagaGGT-----GGTTTATTTTAGTTTGTTTCCCGTGTCACGTCAAATCCTTC-------------TTTCCGTTTAGGTTGgtcggttt-------------ctttt--------tttggtttttcgtgttttggattttt------tctcagaat--tcacAACAATGTTTCGAGAAACTCATTAATACTAGATGAGAACGCCTAGAGACCT-GTTTGATCACCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    277416 258 - 33334924 ---CGGGATGCTCTCAagg---tctcttttttctttcgtttcccATAGTTAGCCAAAAAATATAAGT-GTGCGCT-----GGTCCAGTTTAGTACTCTGGTCGTAATACGTTAAATCCTTC--------tctactttttgtttttttcact--gtttcgaa---atcgtccatgtc-ggatgttcttttttcgtctgctttcgattttt------tctaagtat--tttctat--tgtttcGAGACATTCATTAATACTAAATGAGAACgtcaagaaaaat-gtttaatcACCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2837775 232 -  4147112 ---ACGGAAGCTCAGTAGG---TCACTATTTTGCT--GTTTCCCATGGTTTGCCGAA-----------------T-----TGTGTGGTTTAGTTCGC------TACCACGTCAAATCCTTC---------------TTTGTTTTGGTGGGT-GGTTTCGAA---ATCG--CATgtg-aaaaagttctattttttgtgttttgaaattttagaaaaactaaGAATCGCTTCAGT--TGTTAC---ATTCTCATTAATAACAGATGAGAAAGCTCAGAAAATTCGTTTGATCACCTG
i caePb3.Scfld02_0      C 0 I 211
e caeJap4.Scaffold18190    45890 417 -   435062 I
e cb4.chrX              13552134 2911 - 21540570 I

a score=-1497.000000
s ce10.chrX              2083349 48 + 17718866 -------------------CTCTTCTAGTGTGCATGTGCAAAACGTGCTAGTATTGCGAAATATGGA
s caeRem4.Crem_Contig0   4332733 49 +  4500979 --CGT-------CCGATGTTTCTGCTAGCTTGCA---ACTAAA------ATCATTGCGAAATGTAAA
i caeRem4.Crem_Contig0  C 0 I 185
s caeSp111.Scaffold629    277674 43 - 33334924 CGCGTATGTGGACAGAGCTCTTTGCT------------------------CTGTTGCGAAATAGAGA
i caeSp111.Scaffold629  C 0 I 140
e caePb3.Scfld02_0       2838007 211 -  4147112 I
e caeJap4.Scaffold18190    45890 417 -   435062 I
e cb4.chrX              13552134 2911 - 21540570 I

a score=0.000000
s ce10.chrX              2083397 488 + 17718866 GTGTATCTAAAGCTTATCAAATGAGCATTTGATAGATAAAAATGGATTCATCCAATTTTTTATCCGTTTTTTGAAATATAATATGTGTTCAGGTTCTATTACTTGAAATACTGAAAAAAAAATTATTGCTTTTATAGTGTTGTAGATAATAATTAAAGGTGCTCCTATATTGCTAAAATGCTAATATAGTTTTAAATGCTCCTATAATTCAAAAATGTCCAAATATCGCAGTTAAACTGTTGGGAAAACTTTTGAAATGTTCAGTTTTGTAATTAAACAGTTGGTGAAATTAGTTTTCATTTATCATATGTTTTGGTAGTCGGCCGTCGGCTAAAACAACGCAGaaaatttggcaagtcatcaaaactttgactggaaatgttaaaaaatctaaaactgtttcaagtgttctatgatgaCTAATTTGAACtattatacatattttaaaattaaatctatattaaaGGTTCTTCACTTATTATACATTC
e caePb3.Scfld02_0       2838007 211 -  4147112 I
e caeJap4.Scaffold18190    45890 417 -   435062 I
e cb4.chrX              13552134 2911 - 21540570 I
e caeSp111.Scaffold629    277717 140 - 33334924 I
e caeRem4.Crem_Contig0   4332782 185 +  4500979 I

a score=824.000000
s ce10.chrX              2083885 74 + 17718866 GTCAAAAAAATACACCTGTTCaa----aaatttaaaatttaaaaaaatCTAAACTTTAACTTTTTGA-----ATAGTGATTGT
s caeJap4.Scaffold18190    46307 83 -   435062 gttaaaaaaaaaaacttatttaaTTCCAAGAAGGATATTTGATTAAAACTCGATTTCCCCCCTCCAATCTTCATATGGATTAT
i caeJap4.Scaffold18190 I 417 C 0
e caePb3.Scfld02_0       2838007 211 -  4147112 I
e cb4.chrX              13552134 2911 - 21540570 I
e caeSp111.Scaffold629    277717 140 - 33334924 I
e caeRem4.Crem_Contig0   4332782 185 +  4500979 I

a score=41.000000
s ce10.chrX              2083959 3 + 17718866 TTG
s caePb3.Scfld02_0       2838218 3 -  4147112 TCA
i caePb3.Scfld02_0      I 211 C 0
s caeJap4.Scaffold18190    46390 3 -   435062 TCC
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13552134 2911 - 21540570 I
e caeSp111.Scaffold629    277717 140 - 33334924 I
e caeRem4.Crem_Contig0   4332782 185 +  4500979 I

a score=387.000000
s ce10.chrX              2083962 2 + 17718866 AA
s caeRem4.Crem_Contig0   4332967 2 +  4500979 AG
i caeRem4.Crem_Contig0  I 185 C 0
s caePb3.Scfld02_0       2838221 2 -  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    46393 2 -   435062 GG
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13552134 2911 - 21540570 I
e caeSp111.Scaffold629    277717 140 - 33334924 I

a score=18296.000000
s ce10.chrX              2083964 131 + 17718866 AATAGCTTTCAATTATTTTATCATTGCTGACATTAACGTTTCACA--TTTGAGCAAGTAATAC--GCAGAGCTCATACGTATTTGCA--TGTACGCTGCTGGCTCACACCACCTTTTCTTTCTCTCTCAA-ATATGTA--
s caeRem4.Crem_Contig0   4332969 120 +  4500979 AACAGC-TCCAATTATTCCTTCAATATCGACCTTGACGTTTCGA----GTGACAAATGAATGGA-GTAAGGCTCATGCCTATTTGCATGTGCAC---ATTGGCTCCT-CCACCTTTCTTTTCTCCC-----AAAT-----
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold629    277857 123 - 33334924 AACAGCTTCCAATTATTCCGTCAATAGTGACTTTGACGTTTCAT----TGGACAAATGAATGCATATATCTCTCATGTGGATTTGCA--TGCAC---ATTGGCTCC--CCACCTTTTCATTCTCCCTTTA-AAAC-----
i caeSp111.Scaffold629  I 140 I 10
s caePb3.Scfld02_0       2838223 111 -  4147112 AACAGCTTCCAATTATTCTGTCAATAGTAACATTGACGTTTCAC----TTGACAAATGAATGCATG----GCTCATGCGGATTTGCA--TGCAC---AATGGCTCA--ccacctttctttttttcc--------------
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18190    46395 115 -   435062 AACTTTTTCCGATTATCCCATCA--GCTAtccttcattttttgtcgttttcacAGACGAATAAATG-----CTCGTATG----------CGCAC---ACTACCTTT--CATATATCTCCGTCTCTCACAACACAT---GA
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13552134 2911 - 21540570 I

a score=50012.000000
s ce10.chrX              2084095 115 + 17718866 -----TTCGCCCGTTCTCGTTTCTC---------TCTCAC---------------------------------------CGGCTTATGAATCTCAAAT--GTGGGG------------------------TGGCAGAGGGGCCCCCACTCT-------GTTTTGTGCTCAATTCGAATAAGTGGT-------------GGTGCCCTTTGAGAGA
s cb4.chrX              13555045 130 - 21540570 -----TTCTCCCACCCCGTTTTGTG---------TCCCGT---------------------------------------TTGCTTATGAATCTGAAAT--GTAAGG---GTGCA-------------AAAAGCGCGAAAAGCCCTCTTTCCTTGCTTGGTGTTTCGATCAATTCGAATAAGTGGT-------------GGTGCCCTTTGAGGGA
i cb4.chrX              I 2911 C 0
s caeRem4.Crem_Contig0   4333112 117 +  4500979 -----CTCTACCAAATGTTCCTTTT---------TCCCGT---------------------------------------TTGCTTATGAATCTGAAAT--GTGTAG---CAGAA-------------ACAGAAGAGAGGGGCCAC-------------ACATTTCGATCAATTCGAATAAGTGGT-------------GGTGCCCTTTGAGAGA
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold629    277990 144 - 33334924 -----TTTCTCCGTCTCTTTATGCGCAGCGTTGTTCCCGT--------TTCTGAGCC--ACGCTTC-------------TTGCTTATGAATCTGAAAT--GTGGAGC-cgcaga-------------aaagagaagaggggCCAC-------------ACATTTCGATCAATTCAAATAAGTGGT-------------GGTGCCCTTTGAGAGA
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0       2838342 163 -  4147112 -----TTTCTCCGTCTCTTTTCGCGCACCCTTGTTCTCGCCGTTTCAATTCTGGGACTAACGTTTCTGGGGGCAAACGTTTGCTTATGAATCTGAAAT--Gtgga----gcaaa-------------aaagagaaga-gggcCAC-------------GCATTTCGATCAATTCGAATAAGTGGT-------------GGTGCCCTTTGAGAGA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18190    46510 155 -   435062 TTCCTTCCCACTGCAGCGTTTTATGCT-------TCTCGT---------------------------------------TTGCTTATGAATCAGAAATTCGTGGGGCATGTGAAGATGTCTGTGTCCAAAAAGAAGAGGCGCTCC-------------ACTTTTCGATCAATTCGAATAAGTGGTGCTAGATAGATAGGATGCCCTTTGAGGGA
i caeJap4.Scaffold18190 C 0 I 337

a score=10819.000000
s ce10.chrX              2084210 153 + 17718866 --TGTCCAATGACATTTTGTGCTTAACATTTCATGAGAATTGTCTTTCTTCGTACATCTTTTCCAAGAACAGAAACTTTAACATG----------------TTTCT------------------------TTTGTTTCTTTGAACTAA------ATCTTTTACGAATTTATTATTCCAAATTT----TTTATGTACACAATTTCG
s cb4.chrX              13555175 172 - 21540570 TGTGTCCAACGACA-TTTGTGCTTAACATTTCATGAG-----GCTCTCTTGCCACTCTCTTTTCTTTATCGAAACTTCTATTGTTTTCATAAGACTCTTCATTCCCATC---------------------CATCTTTTGCAGAACAAA------TCTTGCGAAATCCTCACTTGTCCATATTTGTTCTCTGCTTCCATTAAACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4333229 168 +  4500979 TGTGTCCAACGACA-TTTGTGCTTAACATTTCATGAGAAGACACTCACTTGGCACCCTCG----------AAAACTTCTTTCATCTAAACaagaatt----ttcccatttta------------------tttcttttgtcTTATGAAATCCTTTTTTGATGCATTCATATTTCgcaatatat----ttttcttccataaagtta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    278134 155 - 33334924 --TGTACAACGACA-TTTGTGCTTAACATTTCATGAAAAGAAACTCTCTTGGCAGCCTCTTTCCCccatcaaaatattttgt-------------------tttgtatttttagaagAGAAGCATTCAGTATATTTTCTTTGTCTATA------AC-----------------GTTCATACTT----CG-AATCTTGCATATTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2838505 154 -  4147112 --TGTCCAACGACA-TTTGTGCTTAACATTTCATGAGAAGAGGCTCTCTTGGCACCAT------CCcatcaaaacttctttt-------------------cttttatcttGAGGAGA------------ACATTTTCATTGTTCATG------TCTtatgaaatcttt-ttgtttcattctc----tgTTTTCCTACTGACCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190    46665 337 -   435062 I

a score=162751.000000
s ce10.chrX              2084363 185 + 17718866 TTCA----------------GAATGTCCGAAACACTGATAATTCGCTTCAATGTTGGAGGAACTCCAATGGCAACCTTGAAGACGACTTTCCCAGTTGACTCAATTTTCCACAAATGGTTTGTGTCAAGAACAAAGGCGTCCCCATTCACAAGCGACCGAGATGGCGCGTACTTTGTCGATAGAGACCCATTTTCGTAAGT
s cb4.chrX              13555347 192 - 21540570 TCCA---------ATTCCAGACATGTCAGATTCTCTTATCATCCGATTTAACGTCGGTGGCACACCAATGGCCACATTAAAGACGACTTTTCCAGTGGATTCCATCTTTCACAAATGGTTCGTCTCCAGAACAAAAGCTTCGCCGTTTACGAGCGACAAGGATGGCGCATACTTCGTGGACCGGGACCCATTCTCGTAAGT
i cb4.chrX              C 0 I 787
s caeRem4.Crem_Contig0   4333397 192 +  4500979 ttta---------attttcaggatGACCGACACACTAATAATCCGCTTCAATGTTGGTGGTACTCCGATGGCCACCTTGAAGACAACGTTTCCAGTTGATTCCATCTTCCACAAATGGTTTGTCTCTCGAACAAAGGCATCTCCATTCACGAGCGATCGTGATGGTGCGTACTTTGTCGACAGGGACCCATTCTCGTAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    278289 190 - 33334924 CTTA-----------TTACAGTATGTCGGAAACTCTCATAATTCGATTCAATGTTGGAGGTACTCTAATGGCCACtttgaaaacaacatttCCGGTTGATTCCATCTTCCACAAATGGTTTGTCTCCAGAACAAAGGCTTCCCCATTTACCATCGACCGTGACGGGGCTTACTTTGTCGACAGAGACCCATTCTCGTAAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2838659 201 -  4147112 TTTAAAAGTTTAGATTTTCAGGATGTCGGAAACTCTGATCATCCGCTTCAACGTTGGAGGTACTCCAATGGCAACGCTAAAAACCACCTTCCCGGTGGATTCAATCTTCCACAAATGGTTTGTCTCAAGAACAAAGGCTTCTCCATTCACAATCGACCGTGAGGGTGCTTATTTCGTCGACAGAGATCCATTCTCGTAAGT
i caePb3.Scfld02_0      C 0 I 202
s caeJap4.Scaffold18190    47002 184 -   435062 ----------------tccaggATGTCAGAAACTTTAATCATCCGTTTCAATGTGGGTGGCTCTCCTATGGCAACGTTAAAAACCACATTCCCCGTCGATTCAATTTTCCACAAATGGTTTGTATCAAGAACGAAGGCATCTCCATTCACTGTTGACCGCGAAGGCGCATATTTTGTAGACAGGGACCCATTCTCGTAAG-
i caeJap4.Scaffold18190 I 337 C 0

a score=-48732.000000
s ce10.chrX              2084548 116 + 17718866 GAATCA-------------CAAAGGTAT-------------------------------------------TTATTAAAATTATTCTC------------ATGATTGTAA------------------TTTGG--------------TAATTTGGAAATTTGGACGATG-GAAATTATAATATATTGTAGTTGAAAAAA-----AAAAATAAATC--------------------------TTTAAAT
s caeRem4.Crem_Contig0   4333589 124 +  4500979 GCATCAGAA----------CAAAGACAGTCCCAGATAT---------------------------------TTACAAAATTGGTT---------------AGAAACAAAAGGATGAAAATTTCGC---TTTCT--------------GCATTAGGGAATTCTTTC-----CAATTTAC---------CGAtttgaaaac--------acaaaagt--------------------------GTTCAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    278479 133 - 33334924 --ATCTAA-----------CAAAGACAG-------------------------------------------TTactgaatgaat----------------aaaaatagaa-----gaaatgacAT---TCTCGGTGACAAATGTTG-AAACTGGAAGATAGACACTAGAAATAATCACATTata---caattcaaaaaa-----ataacgaaaaa--------------------------attgCAT
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0       2839062 240 -  4147112 GAATCAAAAACGTCTTATTCAGTGGCAGTGCCGAATGAGAATGTTGAAACTTTTCCATAGTCTTATTCTcatttctgaataaattcGCGATTGTACCTAAAAAACTCGAACATCTAAAGTGATTTTGATCACTATAACAGACTcgataaactgaaaacttgtttc-----aaaattgtattcca---tggtttgaaaaatctagaaaacaaaacaggaGATTTTCGAACTTCTCTAATCTTATTGTAC
i caePb3.Scfld02_0      I 202 I 4
s caeJap4.Scaffold18190    47186  33 -   435062 ------------------------------------------------------------------------------------------------------------------------------------------------AA-CAATGAGCATATTGACAG-----ACCGTtgctcttt-----------------------------------------------------------------
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13555539 787 - 21540570 I

a score=184697.000000
s ce10.chrX              2084664 247 + 17718866 ACTTTCTTTCAGATTCGGCGTCGTGCTCAACTATTTTCGTCTCCGGAAAGCTGGACAGCTTTGGGAAGCCTGTCTACCAAAAGACCCAGACAGGTTGGCAATGCTGACACAGGAAGCAGATTTCTTCCTTCTGCCTCAACTACGTGATCAAGCAATCTGCATGCTTCAGCTATGTAGTAATAAAAATGATTCCAACTATATAAACGAGGTAT---------------TTATATACTTAAAAACTAT----------GATAATTATCTGTTGA--------
s cb4.chrX              13556326 258 - 21540570 acatttttccagttttggcATCGTCTTAAACTACTTCCGTCTCCGGAAAGCCGGACAGCTCTGGGAAGCATGTCTGCCAAAAGATCCGGACAGGTTGGCCATGCTCACACAGGAAGCCGACTTCTTTTTACTTCCGCAACTCCGTGACCAAGCTATCTGCATGCTACAGCTTTGCAGCAACAAGAACGACTCGAATTATATCAATGAGGTATCTC------------ACATATAGGAAAGGA-TATGAAATAT-CGATTAATTATCTATCAA--------
i cb4.chrX              I 787 I 2791
s caeRem4.Crem_Contig0   4333713 242 +  4500979 -----TTTCAAGATTCGGAATCGTCCTAAACTACTTCCGTCTTCGAAAAGCTGGACAACTTTGGGAAGCTTGCCTTCCAAAAGACCCGGACAGGTTGGCAATGCTCACTCAGGAAGCTGACTTCTTCTTGCTCCCTCAACTTCGCGATCAAGCCATCTGCATGCTTCAGCTCTGTAGCAACAAGAATGATTCCAACTATATCAATGAAGTACTTG------------ttaattgagaagaaa-tat----------ATTAAATAGTTCTT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    278613 243 - 33334924 -----TTTACAGATTCGGAGTGGTTCTTAACTACTTCCGCCTCCGAAAAGCTGGACAATTGTGGGAAGCTTGTCTCCCAAAAGATCCAGACAGGTTGGCAATGCTGACACAGGAAGCCGACTTCTTCTTGCTTCCACAACTGCGTGATCAAGCCATCTGCATGCTCCAACTATGCAGTAACAAGAATGATTCAAACTACATCAACGAGGTATATTCGCAAAAAGTAATTATTTTATA------------------------AGAGTCATCAA--------
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       2839306 249 -  4147112 tttttcttcaagattTGGGATCGTTCTCAACTACTTCCGTCTCCGAAAGGCCGGCCAACTTTGGGAGGCTTGCCTTCCAAAGGATCCAGACAGGTTGGCAATGCTTACCCAGGAAGCAGACTTCTTCTTGCTTCCACAGCTCCGTGATCAAGCAATCTGCATGCTCCAGCTCTGCAGCAACAAGAACGATTCCAACTACATCAATGAggtgaatt------------tcattttctgccaCA-TAT----------TCTTTCCAACCTTCTT--------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18190    47219 267 -   435062 -ttgtttttcagctttGGCATAATTTTGAACTATTTCCGTCTACGAAAAGCCGGACAGCTCTGGGAGGCTTGTCTCCCAAAGGACCCAGACAGGTTGGCAATGCTCACACAAGAAGCTGACTTTTTCTTGCTACCACAACTCCGTGATCAAGCCATCTGCATGCTTCAGCTCTGCAGTAACAAAAACGATTCTAACTATATTAATGAGGTATggg------------ttaaaaacaaaaataatgcaCAACTTACCTGAAATTAGTCTGTATGCAAATGA
i caeJap4.Scaffold18190 C 0 C 0

a score=41008.000000
s ce10.chrX              2084911 79 + 17718866 -----ATTTCAGATGCTTGCCAAAAGCACAAGTTGCCCGCAAGGATTTGACAAAAAAGAGGAAGAGGATGAAGAAGATTTTTAA----------
s caeRem4.Crem_Contig0   4333955 78 +  4500979 ------TTACAGATGCTTGCCAAAAGCACAAGCTGTCCACAaggatttgaaaagaaagaggaagaagatgaagaagatttCTGA----------
i caeRem4.Crem_Contig0  C 0 I 2062
s caeSp111.Scaffold629    278856 76 - 33334924 -----TTTTTAGATGCTTGCCAAGAGCACAAGTTGTCCTCAGGGATTCGACAAAA---AAGATGAGGACAACGAggatttctaa----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2839555 79 -  4147112 -----TTTTAAGATGCTCGCTAAGAGCACAAGTTGTCCGCAAGGTTtcgagaagaaggaagatgatGACGAGGAGGACTTCtag----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    47486 91 -   435062 AAATATTTACAGATGCTTGCCAAAAGCACCAGCTGTCCTCAGGGATTCGAGAAGA---AGGAAGAAAATGAAGAGGACTactaatttttcttaa
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13556584 2791 - 21540570 I

a score=546.000000
s ce10.chrX              2084990 1 + 17718866 A
s caeSp111.Scaffold629    278932 1 - 33334924 a
i caeSp111.Scaffold629  C 0 I 2039
s caePb3.Scfld02_0       2839634 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190    47577 1 -   435062 a
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13556584 2791 - 21540570 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=857.000000
s ce10.chrX              2084991 4 + 17718866 TTCT
s caePb3.Scfld02_0       2839635 4 -  4147112 ttct
i caePb3.Scfld02_0      C 0 I 2096
s caeJap4.Scaffold18190    47578 4 -   435062 tttt
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13556584 2791 - 21540570 I
e caeSp111.Scaffold629    278933 2039 - 33334924 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=172.000000
s ce10.chrX              2084995 11 + 17718866 GTAATAAATCT
s caeJap4.Scaffold18190    47582 11 -   435062 ttcaaaattct
i caeJap4.Scaffold18190 C 0 n 0
e caePb3.Scfld02_0       2839639 2096 -  4147112 I
e cb4.chrX              13556584 2791 - 21540570 I
e caeSp111.Scaffold629    278933 2039 - 33334924 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=0.000000
s ce10.chrX              2085006 123 + 17718866 ATATTTTGTGATAAAAGCTACAGAATAAACGAATTCTTCTTTGCGGTTTTGTGGAAAATTAACTACTTACTTTCACTAATTGACGTATTCAATTCTCTACAAAACTATTATTTATCTGGTAAC
e caePb3.Scfld02_0       2839639 2096 -  4147112 I
e caeJap4.Scaffold18190    47593   0 -   435062 n
e cb4.chrX              13556584 2791 - 21540570 I
e caeSp111.Scaffold629    278933 2039 - 33334924 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=323.000000
s ce10.chrX              2085129 51 + 17718866 AAATTC-CGTTTTTTTCAACAACCAATGTATGTTTGCTAACGTGGCCCCCTG
s cb4.chrX              13559375 47 - 21540570 AAATTCACATGTTTCCTAATAACTGCTGT---TTCTCAAAGATGGGAC--TG
i cb4.chrX              I 2791 C 0
e caePb3.Scfld02_0       2839639 2096 -  4147112 I
e caeJap4.Scaffold18190    47593  0 -   435062 I
e caeSp111.Scaffold629    278933 2039 - 33334924 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=873.000000
s ce10.chrX              2085180 3 + 17718866 CCA
s cb4.chrX              13559422 3 - 21540570 CCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    280972 3 - 33334924 CCA
i caeSp111.Scaffold629  I 2039 I 2
e caePb3.Scfld02_0       2839639 2096 -  4147112 I
e caeJap4.Scaffold18190    47593 0 -   435062 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=-99.000000
s ce10.chrX              2085183 15 + 17718866 ---AAAA-ATTAGCAAGTC
s cb4.chrX              13559425 15 - 21540570 CCCAGTC-ATTAAATA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    280977 16 - 33334924 ---AGAACATAAAATATTC
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0       2841735 15 -  4147112 ---AGAA-ATTAACTATTC
i caePb3.Scfld02_0      I 2096 C 0
e caeJap4.Scaffold18190    47593  0 -   435062 I
e caeRem4.Crem_Contig0   4334033 2062 +  4500979 I

a score=66927.000000
s ce10.chrX              2085198 199 + 17718866 ----ATCCAAAACAAAAAATCCCCTTAGAAACG--CACGTGTCTACCACTTTTT---------GAAA----CTATTCCCG---AAGATTT---TGAAACTT--TTT------------------TTTAATGCTTGCTGGCGATTTTCAACGATATGTTTGGGTACAGGGAGAACGGAAGCGACAAAAAAATCGAGAAAAGTATGACGAGACTAGAAAGCGATACTTGGATCATGGTTAGTTTTT
s cb4.chrX              13559440 225 - 21540570 -TTCTAGAAGAACAAAGGAGTGTCTTGGAAACAAGCGTGCGTCCACA----TTTGTCAAACCGTCAT----CTTTTCCTGAAAAGAgtctttttgacattttgtttcgaaacattcaATGATTCTCTAATGAATCCCGGTGATTTCCAAAGATATGTCTGGGTGAAAGGAGAGCGGAAAAGACAGATAAATCGAGAGAAGTATGAAGAGACGAGGAAGCGGTATTTAGACTGCG----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4336095 200 +  4500979 ATTCTGAACGAACAATAGCGTGTCTTCGAGACA--CGTGTGTCttaa----ttt---------tgaa----cttttcccttagcaaaact-------attttcttt------------------tctgatgCATGCCGGTGACTTTCAAAGATATGTATGGGTGAAAGGTGAGCGGAAGCGTCAACGAAACCGAGACAAATATGAAGAGACGAAACGGCAATACTTGGGCACAGGTCAGTTTTT
i caeRem4.Crem_Contig0  I 2062 I 101
s caeSp111.Scaffold629    280993 197 - 33334924 ----CAGAAGAACAATAGAGTGTCTTGGAAACA--CACGTGTCTaca----ttt---------tcaa----cttttcccGACAAAACTTC---AGTTATTT-CTCA------------------TCTGATGCATGCCGGTGATTTCCAAAGATATGTATGGGTACAAGGAGAGCGGAAACGTCAGAGGAATCGGGATAAGTATGAAGAAACTCGGAAACGATATTTGGAAACTGGTGAGTGT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2841750 204 -  4147112 ----TTCGGAAACAATAGAGTATCCTAGAAACA--AGTGCGTCTACg----ttt---------cggaaactttttttccgtcaGAACCTT---GGATATTTACTCA------------------TCCGATGCATGCCGGTGACTTTCAAAGATATGTATGGGTAAAAGGTGAGAGAAAACGACAAAGAAATCGAGAGAAGTATGAAGAAACAAGGAAGCGGTACTTGGAAACAGGTTAGTTATT
i caePb3.Scfld02_0      C 0 I 334
e caeJap4.Scaffold18190    47593   0 -   435062 I

a score=257.000000
s ce10.chrX              2085397 34 + 17718866 CCACGTATTT-TGGATGTTTTATATTG--TTACGAAA
s cb4.chrX              13559665 25 - 21540570 ----GTATGT-TGAA------ATAAtg-ttgatgaaa
i cb4.chrX              C 0 I 116
s caeSp111.Scaffold629    281190 32 - 33334924 --ACATATTTATGAA---TCTGTaatgaattatgaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593  0 -   435062 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=91.000000
s ce10.chrX              2085431 1 + 17718866 t
s caeSp111.Scaffold629    281222 1 - 33334924 t
i caeSp111.Scaffold629  C 0 I 139
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593 0 -   435062 I
e cb4.chrX              13559690 116 - 21540570 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=0.000000
s ce10.chrX              2085432 115 + 17718866 gccgtgttttctctattagtattgcacaccgtgggccaactttcacaacatacatctcaattgccagttttcctttactagtaaatttgtcaactgacgaaatttttgtcaattc
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593   0 -   435062 I
e cb4.chrX              13559690 116 - 21540570 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=732.000000
s ce10.chrX              2085547 110 + 17718866 ctttttttaagttttgtagttAATAGATTCAGAAAAAAATTTCAAGATTTAAAATTAAATTATACTTTCAGAATTTATTGATTTTGTTTTACAAAAAAGATATTGCAAGA
s cb4.chrX              13559806  80 - 21540570 CCTTTTGTTAGTTTTCTAAT-----------GAAACAGA-----------AAGCTTCAGTTGCACTTT---aatt-----atctaaatttctgaaaaagataacaaaata
i cb4.chrX              I 116 I 154
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593   0 -   435062 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=0.000000
s ce10.chrX              2085657 186 + 17718866 ACTAAATTAAAATTTTTGTTCTAGATTTACGAGCGATTTCGCAATAGGGGGCAATTCGTGAAATTTGGTTTAAAATAGCTTTTTATCCTTTTTTGAAATGTTGCTtagagtcaattttttctgctctaaatgacaatcttagtatgtcagatatcacttttaaaagattgtcaatcttttttatga
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593   0 -   435062 I
e cb4.chrX              13559886 154 - 21540570 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=-1351.000000
s ce10.chrX              2085843 266 + 17718866 tttttttttcaattttacgaaaatcaaagaaacagtgaatttgtagtcccg---taaaagtcagcgacgtcatttttgacatgttttcagactaacttgccgat--tttAGATAAATTTTGAACTTTCCGcaatttactttcacggaaaaatgtttaaaaattgacaaaaaatgtttctaatcaaatattatggaaaaatcaaagagaaccaatggttttagccagaaaacacgaaaaAAATCATTTGAAGCTTAAAATTGCTCTTTATCT
s cb4.chrX              13560040 176 - 21540570 ttttctCTCCAATTTCGGAGTactttcagaaa-agttatTCTAActttccaattcaaaatttggatac-----------CAAGATTTCTTATTTATTTGTCAAGTATTTATATTAGATCCCAATTCTC---------CTTTCAC-------TCTTTCCTAAGTGATA----------------------TATG---------------------TGTTTTTGCCA-AAAACAGGAAATAG-----------------------CTTTATTC
i cb4.chrX              I 154 I 29
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593   0 -   435062 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=0.000000
s ce10.chrX              2086109 50 + 17718866 ATGTAAGATAAACCTAATGAAACTGAATGCTGATTTTAAAAAAAATGTAG
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593  0 -   435062 I
e cb4.chrX              13560216 29 - 21540570 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=-358.000000
s ce10.chrX              2086159 47 + 17718866 TTCAATTTTTCCAGTCACAAAGTACAAACCCTCTTGCCCTACAACTT
s cb4.chrX              13560245 28 - 21540570 TCCATTTCCTCCTCTcatgaatt-------ctttt------------
i cb4.chrX              I 29 C 0
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593  0 -   435062 I
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=0.000000
s ce10.chrX              2086206 9 + 17718866 ATATATTTC
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e caeJap4.Scaffold18190    47593 0 -   435062 I
e cb4.chrX              13560273 0 - 21540570 C
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=182.000000
s ce10.chrX              2086215 2 + 17718866 AA
s caeJap4.Scaffold18190   404726 2 +   435062 AA
i caeJap4.Scaffold18190 I 20742 C 0
e caePb3.Scfld02_0       2841954 334 -  4147112 I
e cb4.chrX              13560273 0 - 21540570 C
e caeSp111.Scaffold629    281223 139 - 33334924 I
e caeRem4.Crem_Contig0   4336295 101 +  4500979 I

a score=239357.000000
s ce10.chrX              2086217 507 + 17718866  
s cb4.chrX              13560273 542 - 21540570  
i cb4.chrX              C 0 I 932
s caeRem4.Crem_Contig0   4336396 509 +  4500979  
i caeRem4.Crem_Contig0  I 101 I 5
s caeSp111.Scaffold629    281362 496 - 33334924  
i caeSp111.Scaffold629  I 139 C 0
s caePb3.Scfld02_0       2842288 511 -  4147112  
i caePb3.Scfld02_0      I 334 I 553
s caeJap4.Scaffold18190   404728 520 +   435062  
i caeJap4.Scaffold18190 C 0 I 2828

a score=-603.000000
s ce10.chrX              2086724 14 + 17718866 TTTACTGGTAATTT----
s caeRem4.Crem_Contig0   4336910 14 +  4500979 ----ataaagttttttct
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629    281858 14 - 33334924 tgaaataataattt----
i caeSp111.Scaffold629  C 0 I 459
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I

a score=-234.000000
s ce10.chrX              2086738  92 + 17718866 CTGAAAAATCGCATGACTTTATATTACGACAT--------------------GTATAGTTTTCATAA-----------------------TGTAACTTGTAAAAGACTTGTTTTCTTCTTTATTGCTTATATTTT
s caeRem4.Crem_Contig0   4336924 123 +  4500979 ctcaaaaa-------agttt-tactcCGACATTGGAAATGCAAGACGAATGAGTGTCTTGCTCAGAAATTCCTCCGCTCCAACCTATACTTTTAATTTATGAAAGATTTCTGTT----TCCATTgcattcaattt
i caeRem4.Crem_Contig0  C 0 I 76
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I

a score=0.000000
s ce10.chrX              2086830 96 + 17718866 CCAAAATAATTTTTTTGCGTAATTTAAGTACTTGTATTTATAATTCTTTGCTAAAAAAATAAATATGTATTATGAAAAACTGCAGAACTGTGAAAA
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I
e caeRem4.Crem_Contig0   4337047 76 +  4500979 I

a score=568.000000
s ce10.chrX              2086926 51 + 17718866 TTTAGAAACTATAATTTTTCTGAGGAAATTTATACCTTGGAAATAATATTT
s caeRem4.Crem_Contig0   4337123 38 +  4500979 TTTCTTATCTACAAATTTTC---------TTCCACCCTG----TAATGTTT
i caeRem4.Crem_Contig0  I 76 I 40
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I

a score=0.000000
s ce10.chrX              2086977 42 + 17718866 CAAACAATGAAATGTATTCTGGCTTTCAAAGCAAACTAAAAT
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I
e caeRem4.Crem_Contig0   4337161 40 +  4500979 I

a score=546.000000
s ce10.chrX              2087019 55 + 17718866 GAATAAAAAAAATTATGTAAGCCTTGGAAATCTGaataatatatttgaaatattt
s caeRem4.Crem_Contig0   4337201 48 +  4500979 GAATTCATAAACTTA-------CTCGGTAGTCTCACCACTAATTTCATCATATTC
i caeRem4.Crem_Contig0  I 40 I 18
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I

a score=0.000000
s ce10.chrX              2087074 22 + 17718866 taatatgaaaattgtaaaaaaG
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I
e caeRem4.Crem_Contig0   4337249 18 +  4500979 I

a score=-614.000000
s ce10.chrX              2087096 184 + 17718866 TGTGCATAGATTAGTAACAGTTTTTTTCTGAACATTGC-TTTAAAAAATTGATATTAAAGGCTATAAAAATttaatggagaagtaccggtttggacgattttgaacatatagacccaaaatgtgcttaaataaacgaattttttaatgaaacgactcaaaattgtttcaaaagttttttatggcg
s caeRem4.Crem_Contig0   4337267 130 +  4500979 TGTGAATAAACT-----TTGTCCTTTTTTGATATTCGTGCGTGATAAATCAGAAGTAAAGAC-------------------------------AACTATTT--------TAGaagtaaacttttttta-----------tttttcggaaGACGACTAAAACTGATAACAACTGTCATCTTGAACA
i caeRem4.Crem_Contig0  I 18 I 117
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I

a score=0.000000
s ce10.chrX              2087280 133 + 17718866 gttcaaaatttccaaaaaTACCTTAATCAACAAAACAACATAAGGTAAATTACCAAAATTTGCAAAAAAAATGACAATAATTAAAACAAATCTACTTTGAATCACTGCGGCACGGAAAAGTAAAAAAAAAGTT
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I
e caeRem4.Crem_Contig0   4337397 117 +  4500979 I

a score=-1197.000000
s ce10.chrX              2087413 161 + 17718866 GGATAATttttttcgaaattttgaaccgtcatataaaattttgtagattaaaaaaaaatttaa----ttacaaa-attcgatcatttaagcacatattcaatttatacgttaaaaggcgtccaaaccgttactcatccctAACTATGTTTATCGAACCGA-----------------CTTC-----------CC
s caeRem4.Crem_Contig0   4337514 156 +  4500979 TGATTAATTTTTTCGATGTCTAGGAC------------TTTTCTAACTTGTTAGGCGATTCCAActctttcaaacattttatgTTTT-----CGTACTCAAT------GCTCAAAG--------------AATCAAATCCAACGAT-TCTATGGAGGCAAGAAAAATGGAGCCACGCCTTCTCACTCATATACC
i caeRem4.Crem_Contig0  I 117 C 0
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I
e caeSp111.Scaffold629    281872 459 - 33334924 I

a score=1095.000000
s ce10.chrX              2087574 46 + 17718866 TAGGTTGA-GAGA---TTTAGTCTCATCGTTCCACACGCACCAGGTAACT
s caeRem4.Crem_Contig0   4337670 38 +  4500979 -TGACTGCAGTGA-----------TTTCGTTCCGCACGCCTCTAGTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    282331 49 - 33334924 TAGATTGC-GTGCtcattttacttttttgttcaacACTCTTCAGGTGAGT
i caeSp111.Scaffold629  I 459 I 1
e caePb3.Scfld02_0       2842799 553 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I

a score=-5150.000000
s ce10.chrX              2087620 41 + 17718866 ----GAA-AATAACATGC--ACTTTTAGGAAGCTAGAGCCAGGATGTC----
s caeRem4.Crem_Contig0   4337708 40 +  4500979 ----GAATTACACCATGT--ACTTTTCAACA-----AGTCGAGTCCACCGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    282381 40 - 33334924 GGGAGAG-------ATGT--ACTTTTGAAGATT---TAATAAGTCCTCCGTT
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       2843352 32 -  4147112 GAGAGAA-------GTGTGAACTTTTATAGA-------------CCTGCAGA
i caePb3.Scfld02_0      I 553 C 0
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13560815 932 - 21540570 I

a score=79333.000000
s ce10.chrX              2087661 322 + 17718866 TTAATCCTTTTCGTTTTCCCCATTTGTCTC-GATCCAATATAACGAAGCGGTTAAGTTCTCAAAACTTCAAAAATCTGTCGAATGAAGCAAGTGTGAGCT---GCTTTTTTTCA-AATAAAAGTATTGCCCTAC------AAATGTTAGAGGGCTCAGAACGGAAAC-------TAGCTGGCTGTTCAGCAGATGTTCGTCA------AGAT---GGCACCCTT-CATGGTAAAAGTATC-T-TTCACGTTTTTTTTTCTT---CGCCGAGTA--------TCTGAGTAGAGGGAGTTTCTCAACTTGTGCTCGTTTCTCTTAATCTAATTTCCCAGAACAACTTGGCGATTGTACTTCTTTT
s cb4.chrX              13561747 292 - 21540570 TTAATCCTG-------TCTGCACTTTTCTC--ATCCCGTAGAAGTGTGAAAGGGCTCTTC----TTTTACAAAGTCCACTGAATGA--------TGTGCT--------CTTTCC-GGATAAGAAAATGT------------AAACCTAGTTGACCTAGAACGGAAGTCGTGATGCATGCG-------AGCATCTGTTCGTCACTCaaaaaaa---CACACTTCT-CCTTG-GCATCTATCTT-TTCACACTTTGCGCTTTT-------AGATA--------TCTTTGC-GGGGATGCGCCTAAACTAGTGCTCGTTTCTCTTAATCTAATTTCCCAGAAAAACTTGCCGATTgtacttctttt
i cb4.chrX              I 932 I 5421
s caeRem4.Crem_Contig0   4337748 306 +  4500979 TTAATCCT--------TTGCCTCTTGTCTC-AATTCAATAAATGGGCGGGACGGAAGAT-----TCTCAAAAAGTCTACTAAATGACGAGAATGTGTGCt---------tttcc-ggataagaaaatgtt----------GTGTGTTAGATGACCTAAAACGGAAGC----GTCTAGTTG-------AGCAGCTGTTCCTTAAACAGAAGAAGCTCACACCCTT-CATGGTGCGAGTATC-T-TTCACCCATCCtttttttGCTCGACGAGTA--------TCTCAGT-GAAGGAGCTTCTCAACTTGTGCTCGTTTCTCTTAATCTAATTTCCCAGAACAACTTGCCGATTGTACTTCTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    282421 314 - 33334924 TTAATCTCATT-GCACTTTCCACTTGTATC-AATAGGATAAGAGAAAAG---------------CATTGGATAGTCTTCTAAATGACGCAAATGAGTG-------TGGcattcc-gaaaaaagaagtgtttTATGTTAGAAGATGTTAGATGACCTAGAACGGAAGT-------GAATAG-------AGCAGATGTTCGTCacttagaaaaa---aaagctctT-CATGGTGCAAGTATC-t-ttcacactttttcttttt---ttcttcatgcCAAGTATTCAGAGG-GAAGGGGCTTCTAAACTTGTGCTCGTTTCTCTTAATCTAATTTTCCAGAACAACTTGCCGATtgtactcttttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2843384 305 -  4147112 TTAATCTGATG-ACCTTTGTTATTTGTCTTAAATCCAATATGTGAGAAA---------------CGACTAAATGTCTGCCAAATGACGCGAGtgtatgctttttttttctttccggaaaagaaaagtgtc----------GAATACGAGATGACCTAGAACGGAAGT-------TAGTTG-------AGCAGATGTTCGTCACT--GGAAAA---GAAACTCTCGCACACTTCAAGTATC-TCTTCACACTCCTTTTTCTT---TGCCTCGTA--------TCTGAGT-AAAGAAGATTCTAAACTTGTGCTCGTTTCTCTTAATCTAATTTCCCAGAACAACTTGCCGATTGTACTTCTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   405248 2828 +   435062 I

a score=1261.000000
s ce10.chrX              2087983 35 + 17718866 --C--TGAGA---CGTCGAACAA------GTTTTCACACTCTTGTTAG
s caeRem4.Crem_Contig0   4338054 48 +  4500979 CTCGGTGAGAGAGTTTCgcatcttcttcatttttcacactttcttCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    282735 40 - 33334924 --ctttgagagAGTTTtgcatct------tctttttcatctttcacaC
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0       2843689 33 -  4147112 --C--TGAGAGAATCTTA-----------GTTTTCACATCTtcttcag
i caePb3.Scfld02_0      C 0 I 3030
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=1217.000000
s ce10.chrX              2088018 7 + 17718866 AACACTT
s caeRem4.Crem_Contig0   4338102 7 +  4500979 AACATCT
i caeRem4.Crem_Contig0  C 0 I 1045
s caeSp111.Scaffold629    282783 6 - 33334924 -ACATCT
i caeSp111.Scaffold629  I 8 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=-6763.000000
s ce10.chrX              2088025 493 + 17718866  
s caeSp111.Scaffold629    282789 785 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I
e caeRem4.Crem_Contig0   4338109 1045 +  4500979 I

a score=2910.000000
s ce10.chrX              2088518 426 + 17718866  
s caeRem4.Crem_Contig0   4339154 412 +  4500979  
i caeRem4.Crem_Contig0  I 1045 I 94
s caeSp111.Scaffold629    283574 450 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=633.000000
s ce10.chrX              2088944 8 + 17718866 TTGCCAAA
s caeSp111.Scaffold629    284024 8 - 33334924 TTGCCAGA
i caeSp111.Scaffold629  C 0 I 101
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I
e caeRem4.Crem_Contig0   4339566 94 +  4500979 I

a score=0.000000
s ce10.chrX              2088952 112 + 17718866 ATCGTTGAAGTCTTTTGCTGGGTTTTGTTCAGTTCCAAAAGCAGCTGTGACAATATTATACATGTCTTTTATGTTAGGAAAAATATTATTGATCATGTATAATTTGATTGAC
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I
e caeSp111.Scaffold629    284032 101 - 33334924 I
e caeRem4.Crem_Contig0   4339566  94 +  4500979 I

a score=318.000000
s ce10.chrX              2089064 8 + 17718866 TTTTACTA
s caeRem4.Crem_Contig0   4339660 8 +  4500979 TTTTCata
i caeRem4.Crem_Contig0  I 94 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I
e caeSp111.Scaffold629    284032 101 - 33334924 I

a score=-3249.000000
s ce10.chrX              2089072 104 + 17718866 ---------TTCCAAGCACTAACTTCTATTTATAATTAAATCTTAATTTTACTTTCAATAAAACATTTCTGATGC------------AAATTATTTT------TAAGACTT----GCCATAGCCCAAAAATTAGC
s caeRem4.Crem_Contig0   4339668 100 +  4500979 ttgcaaaaattgaatatacaAAattt-------gtttacattttggcttttatt-----------tttcagcccc------------aaattatttttttgt-tgttagcA----GCTGTATTCAGTAAATTATC
i caeRem4.Crem_Contig0  C 0 I 92
s caeSp111.Scaffold629    284133 109 - 33334924 ---------TTCAATACGTAAACTTC-------ACTTAACTGTGAGACTGTTTT---------CACTTCAGTTCCtatagaaaaggaaaataccATTTTTGTGTGTGAATATCATTCTATTTCCACAAATTGAT-
i caeSp111.Scaffold629  I 101 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=-1172.000000
s ce10.chrX              2089176 101 + 17718866 AACCAATTTCTCAATT---CTCGGCCACCTGAGATTATGAAAACGCATCTGCTTATTTTTGCACCTGTTTTGTGTTTTCGACCAAACCATGACTAAAACtaaaa
s caeSp111.Scaffold629    284242  81 - 33334924 GAAtcattcttgaatttttccctgtgctttcgatttctgaaatcatgttggatattttttg-------tttgt----------------tgaaaatatatgtgt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I
e caeRem4.Crem_Contig0   4339768  92 +  4500979 I

a score=-6470.000000
s ce10.chrX              2089277 197 + 17718866 ----taatttttttcataaaattgtattttatttagaaaaaaaagacaattttaaaaattCCGAAAAATTGCAATGAAAATGTTTTAATTTGCACTTTATAATTTTGAAAAAAAAATTGTAAAAAATGACGATTATTACGaaataatataaaaa---------------tacagttt---aattttttatatc---taattttCTAAACACTCGCAATACAC
s caeRem4.Crem_Contig0   4339860 177 +  4500979 Tgcttttttttattcgaa----tgAATACTTCATCACCATTAAAGCca---caaaaaacttcaaaaagtttcta---------actaattt---------aattttgaaa--------agagaaaata----ttatcagcaaaaaa---aaacaaactatcAGTTTTTGTACATTTCTTAACCTCATTCCACCAAAGAACTTTGAAAACCCACCCAA-----
i caeRem4.Crem_Contig0  I 92 C 0
s caeSp111.Scaffold629    284323 125 - 33334924 ----cattgtttttcata----tgTATTCATC-TAACTGCTGAAG-----------------AATTAGTCACAC---------TCTATTTC-----------TCTggaaa------ttattaaaaatg----taatttgaaacgaa---aaaca---------------tacatttt----cattattccaTC--------------GTTCTCCCGT-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e caeJap4.Scaffold18190   405248 2828 +   435062 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=-13042.000000
s ce10.chrX              2089474 114 + 17718866 AAAAAACTCATTATTTTCTAAATT---------------CTACACTTGCTG--AGTTATC----AGAAAC-GATGTAAAAACC----ACGAACAGCAAGCGACGG-----TGGTGACCTCTGTCCTC-TCGCTCACTATCCTTGTT
s caeRem4.Crem_Contig0   4340037 112 +  4500979 -------TTATTCTTGGCGACAGTTTGTCGGTAATTTCACCATGTTTCTTT--GACAAAT----AGAA---------------------AAGCAGCCAGCTGGTGGGAAAGGGTGACCTCTACCAGCAACGTACACTTTTCTCTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    284448  85 - 33334924 -------CTTTTATT------------------------CAAGATCTATTA--GATCAATTGGGAGAA---------------------GGGCAGCTGGCATGTG-----TTGTGACCCC--CCAGTATTTTCCACCCCACCCAGG
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold18190   408076 127 +   435062 aaaaaaccactcgtttttcaacttttttc----------tcgCATTTTCTGCCAATCAAT----GCAATCAAAAGTAAAAACCTAGTGGCGACAGCTGTGCGATGAGA--CGTTGACCTCTGCAGCGCTCGTACACATTTTTA---
i caeJap4.Scaffold18190 I 2828 C 0
e caePb3.Scfld02_0       2843722 3030 -  4147112 I
e cb4.chrX              13562039 5421 - 21540570 I

a score=-33613.000000
s ce10.chrX              2089588 398 + 17718866 GTTTGTTGCGC---------GCCTGCGTCTCGTTTTCTCGTTGCGCTGCGGCCGCGTCGCGTCCCCTCCGAGTGGTCGCAT--------TTCT-TACCGTATCGTTCTCATACCATAACCCTTTCTGCACTTGGCGGCAAGGTGAATAGTTTGAAT-----TCGAC--GCTTCTT--TCGCAATATCTAGCAGTCTCGAGCTGTTTTTAAGCTGTCTGAGGCAAATTTTGTCATGCTAACCAGAAGAAATGCTAAGCAGGTAACTAGAT-ATCATTTCA-----AAAAAAATTTCTAAAATTTTTTGA----AATCTCTTGAAACCCATGTTTTCATTTTTATTTCGCTTCTGTAC---TTTAA-CCTTTCCTTTT----------------ATAAAC-------------------------TCCTTTCAAATTTCAATTTATCGAATCTTTTATAA--ATTCCCTACTTTTTTAGACGTT
s caeRem4.Crem_Contig0   4340149 399 +  4500979 GTCAACA-CACAATCGCAGTGTCTGCGTCTC---------GTGCGTCGCGGCCGCGTCGCGTCTT-----------CGCATATGTCTCCTTCATTACCGTAT-TGACATCTACCATAACCT-GTAAAGAATTGGCGCCAAGGCGCGCGGTTTGAAA-----TTTTA--GCTTTTTAGACATTGTTTTTAGAGTCTTCA-GTTG-GTTTTAACTGTTTTCAATAGGTTTCGGCATGAAAACTGAACAATTACTGTCACTGGCAACTTTAG---TTTTTAC-----CCCAAaatattt-aacttttttctgaaaaatc---tgaaaatatagtgTTCCTACGAAGTGTCCCATCTCAT---TTCCTACCTTATCTCTC---TAATACTTCTGTGTAAATCAGTGTCTCCGC-----------CCTTTCTTTCACTCTT---TTCATTTTACCTACAGTAGTCATT-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    284535 413 - 33334924 GTTTGCT-TAC------TGTGTCTGCGTTTCTTACTCTCGACGCGTAGCGGCTGCGTCGCGTTTCTTCC----ATCCGCAT--------TTCA-TACCGTATCAGTCACATACCATAACCCAACTTGCAATCGGCGCCAAGACgcctattttgaaa-----acata--atttgTT--TTGTGGTTTCATAACGCACCACGTTGCGTAGAGACGGCCGCGAGCGAG-TGAAAAATGCAAACGAGACAAGCAACAAGACAGGTAatattggaaattttttg-----aatcataaATCT-GACCTTTCACC----ATTT---TGAAAGTGTGTGTTTTGTCCTTATCTCATCATCCCAC---ATCAC-CCTTTTCTGTC-----------------TAACCAACCTTCTCACTAATCCCCTAAGTTCCCACTCAAATCT---TCAACATAATCCACCGTAATCAATCctatatttttga--tatt
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0       2846752 416 -  4147112 GTTTGTT-CTC---------GTCTGCGCCTCCCAGTCTCGCTGCAGAGCGGACGCGTCGCGTTTCATTT----TGACGCAT--------TTC--TACCGTATCTGGCAGCTACCATAACCCAATTCTGAAATGGCGCCAAAGTGGGCTTTTCGAACCCAATACATA--GTTTG------------TCATAACGCGATG-GGTGTATAAAGTGTGTGATACGCAAGTTTTATCGTGCGACCCGACCAGACGACGAGAGAGGAAACAAGgg---tctttcgaaaaaaacaatgattatAGGGTCTCCTCT----AATA---CCTAATCCCGTCGTTCATCTCGCTCTGGTCATCCAACTCAATCCT-CTCTCTATGTCTCCTAATCATTTTATAATAAGCCTCATTCCCACggctctcctcttttttctttcgaagc-----------AATCTACCGT----ATGCCTTTATTCTTCAT-TGTT
i caePb3.Scfld02_0      I 3030 C 0
s caeJap4.Scaffold18190   408203 334 +   435062 GCATACt-ccc--------tctctgcgtctctctctc---GTGCGTCGCGGCTGCGTCGCGGCTACTCGTGGTCGCTATAC--------CCT--TACCGTAT------CATACCATAACCCACACTTTGCTTGGCGGCAACCCGAGAGGTTTGAAT-----ATCAACTACTTTTTGCTTGTACTTTTCATACTCG----ACCGTTTTTAAGCCTACCGGCGT-GGTTTGGCCATGCAAACTCGCGGGAAGTCAAACCAGGTA----------CATTTCA-----ATCGTAACCCAT----------------ACTG---TAGCAct---------------------------------ctcaa-atttttatttt----------------ataagtTGGTGGACCAC----------------ACTTAACGCCt---attattgaaattttcatatttaatttttaatttgtt-------
i caeJap4.Scaffold18190 C 0 C 0
e cb4.chrX              13562039 5421 - 21540570 I

a score=102868.000000
s ce10.chrX              2089986 327 + 17718866 CTCTAC-TTTCAGAGTCAACGGAATTCTGCGGATCAGTCCCTCT--------CTGAATTCAACAGTTCCAGTATGACTCACGGGTCGAATCAGTCAGTTTATCACCACAATCAACACATGGATGACTCCGAAATGATGATGGATGAGCAGGATTATTCTCAGGT---A-CTCAAAAAAATTCTGAAACCATTTCAGGGGC--ATCATAAT-----CAATTTCAGTATCAAATGGGGTTT---CCTGAAGAAGATGAGATGGTGGAAGGAATGATGACCCCTCGAGCTGTGCACCAGTGTAATGTTTGCAACAAAATATTTGTTTCCTATAAAGGTAATTT--------TTTGAAAAAT
s cb4.chrX              13567460 330 - 21540570 CTC-TCATTGTAGAATCAACGGAATACAGTGGATCAA--CGTCAACAGAACCCGAATTTCAGCGATTCAAGAATGGCTCTCGGGTCGAACCAAGCCGT---TTACCATGCACAACAATTGGATGATTCTGACATGATGATGGAAGAACCGGAATATTCCCAGGT--------GTGTTAATTgttaaataagaaaaaaaaataaaccaaaC---AGTTTTCTTAGTTCCATATGGGATAT---CCCGAAGAAGATGAGGTCGTGGAAGGCATGATTACACCTCGTGCCGTTCATCAGTGTAACGTCTGCAACAAAATCTTTGTTTCCTATAAAGGTGAGTC--------ACCGTAACCC
i cb4.chrX              I 5421 C 0
s caeRem4.Crem_Contig0   4340548 321 +  4500979 CTCAACATTTCAGAGTCAGCGGAACTCTGTGGAACAGTCTGTCA--------CGGACTTCAACGATTCGAGGATGACTCACGGGTCGAATCAAAATGTATATCACCATAACCCGCACATGGACGAATCAGATTTGATGATGGATGAACAAGATTATACACAGGTTAGTTTCCGTTTTTGCGATTGAACTTTActaaaaaccgattttca------tttttacagtaCCAAATGGCGTAC---CccgaagaagatgaaatggTGGAAGGAATGATGACACCTCGAGCAGTGCATCAGTGTAATGTTTGCAATAAAATATTTGTGTCTTATAAAGGTAAG--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    284948 289 - 33334924 -----c-----agaGCCGAGGAAACTCGT-----------------------TGGAATTCAGcacacaaaaaatggctCACGGGTCGAATCAGGGAAT---ATACCATCATCACAGTATTGATGAACCTGATTTCACACTAGATGAACAAGATTATTCTCAGGT---ATTCCGTTTTTATCTTGAAACTCC-----------ATCTTGACAAGACAAATTACAGTACCAAATGGGTTACGGAGccgaagaagatgaaatgatTGACGGAATGATGACACCGCGTGCAGTACATCAATGTAATGTGTGCAACAAAATATTTGTGTCTTATAAAGGTATTG-------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2847168 302 -  4147112 -----CTTTGTAGAATCACGGAAACACAG-----------------------CGCCTCGCAACAATACAAGGATGACACACGGGTTGAGTCAAGCAAC---ATACCATCCTGGGCACATGGACGATACGGATTTGATGATGGATGAACAAGACTATGCTCAGGT---A-ACCATTTTTAGCTTGAAACTCtga--------gattttttc----tgtttttcagtacCAAATCGGCTATAACcctgaagaagatgaaatccTGGAAGGAATGATGACACCCCGTGCTGTTCACCAATGTAATGTGTgtaacaaaatatttgtttcatATAAAGGTACtgt--------acttcaaaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   408537 267 +   435062 ---------tcaGGATCAGCGGAGTTTGGCAGACACTTCTATCA--------GTGATTACAACGACTCCAGAATGACACAAGGATCCAACCACTCCGTTTATCACCATG------GCATGGATGAGTCTGACATGCTTTTGGATGATTCTGAATATGGACAGTT--------------------------------------------------------------CCAAATG---TTC---CCAGAAGAGGATGAGATTGTTGAAGGAATGATGACGCCAAGAGCCGTTCATCAATGCAATATATGTAACAAGATATTCGTTTCCTACAAAGGTACGGTTTATattctttcaaaaat
i caeJap4.Scaffold18190 C 0 I 17

a score=-2140.000000
s ce10.chrX              2090313 20 + 17718866 ACGGTAGCTTTGTCTAACTC
s cb4.chrX              13567790 20 - 21540570 AAGGTCTCTTGCTGTGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4340869 19 +  4500979 -AGCTATTTTTTGGGTACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285237 17 - 33334924 ---GCAGCCTTTTGtgaatg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2847470 19 -  4147112 -aataatttcttcgTGAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   408804 17 +   435062 I

a score=112787.000000
s ce10.chrX              2090333 224 + 17718866 TGATT-------------TTGTTTTCAGGTCTCCAGCAGCATGCAGTGATACACACAGATCAGAAGCCTTTCCGATGTGATATTTGTTCAAAATCATTTAGGTTTAAGTCGAACTTGTTTGAGCATCGTTCAGTCCATACCGGCTTCACTCCTCACGCCTGTCCATATTGTGGAAAAACTTGTCGGTTAGT----------------------GGTTTTTTT-------------------------AAACAACATTC-GCT-------------------G------TGCTCTTTCAA------ATGTACAGTAA
s cb4.chrX              13567810 275 - 21540570 CATTG-------------TTCTCTTCAGGATTGCAACAACATGCGGTGATACATACGGATCAAAAGCCATTCCGATGCGATATATGTTCCAAGGCATTCAGATTCAAATCTAATCTTTTTGAGCATCGTTCAGTGCACACTGGTTTTACACCACATGCTTGTCCATACTGTGGTAAAACCTGTCGGTTAGT-TGTA----------------CtttttttCT----GCCCTAGCATTATAACCAATAATGCTAGCCTCAGCG-------TTTTTTCCCTCATACCATCTGCTCTGTCGTCACTGTATGTACAGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4340888 302 +  4500979 CTTtgtaaaatgtt----ttgtttctagGTTTACAACAACATGCAGTGATACACACAGATCAGAAGCCCTTTAGGTGTGATATATGTTCTAAATCGTTTCGATTTAAATCAAACTTGTTTGAACATCGATCAGTTCATACGGGATTTACACCTCATGCATGTCCATATTGTGGAAAGACGTGTCGGTGAGTCTGTATCAAAATGTCAGCGGTCTGTCTTTCTAACGGTCTTTGGCTCATGCATggtcttcctcttttc-tct-------ttttttccgtcGT--TTTCTGCTCTTCTGTCATTGTATATACAGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285254 271 - 33334924 tttta-aaaatgt-----caacTTGTAGGTTTGCAACAGCATGCTGTCATTCATACAGATCAGAAACCGTTCCGATGTGATATTTGTTCCAAATCGTTTCGTTTTAAATCAAATCTATTCGAGCACAGATCAGTTCACACTGGATTCACACCTCACGCGTGTCCGTACTGTGGAAAGACCTGCCGGTAAGTTTTTCACGAGTTGTCGTTGCGTTGACACGTT----GACCTGGAG---------AGAATGCTATCTTC-GCT-------------------T--TTTCTGCTCGTCACAAG----GCGTACAGTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2847489 279 -  4147112 CTTT---------------GTTTTGCAGGCCTACAACAACATGCAGTCATACACACAGATCAGAAGCCTTTCCGTTGTGACGTCTGTGCTAAGTCCTTCCGTTTCAAATCAAACTTGTTTGAGCATCGATCAGTACATTCTGGATTTACACCCCATGCATGTCCATACTGTGGTAAAACCTGTCGGTAAGTCTTCTAC---CTGACACCTGGCTGacgttct----gaaaatgag------------atgctatcttt-tttcacattgttCTTTATTTTCC--TTCTTGCTCTGCACACGTCATGTGTACAGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   408821 214 +   435062 -------------TGAAGTTTTTTCCAGGCCTCCAGCAACATGCAGTAATTCACACGGACCAGAAACCATTTCGATGTGACATCTGCTCGAAATCCTTCCGATTCAAGTCAAATCTTTTTGAGCACCGTTCAGTGCACACCGGATTTACCCCACACGCCTGTCCGTACTGTGGAAAAACTTGCCGGTGAGT---------------------------TGTT----GC-------------------CTACTTTATTC-ACG----------------------TTTTGTCTC----------------ACAGCAA
i caeJap4.Scaffold18190 I 17 I 17

a score=6212.000000
s ce10.chrX              2090557 27 + 17718866 TAAAAATGTGGCGGGT---------TGCGAAA-----ACGA
s cb4.chrX              13568085 41 - 21540570 TAAAAATGCGGTcgttgtgtgtgtgtgtgcgagCGTTGCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341190 26 +  4500979 TAAAAATGTGGCCGTT---------TGCGCGA------CGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285525 26 - 33334924 TAAAACCACGAGCGAT---------TGCGAAA------AGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2847768 26 -  4147112 TAAAAATATGACCCTC---------TGTGAGA------CGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   409035 17 +   435062 I

a score=11778.000000
s ce10.chrX              2090584 204 + 17718866 CCGTTTCCCCTTAATTCTCATTCT-----CTCACAGT--------------------------------------------------CGACTCTCCT----------CTGCTAATGCGC------------------------AGTACGGTGT-GTACAGTGTACGGGC-----CGAGAAACGGTAGAGAAAAAGAGACGG----------ACGAGAGACACCGTAATGCCATA--GGCGACACTGTAGAA-CAATCGATAAAACG------AAGAGAAA--TA----------------------------------------------GTGTTAGAAT----GGTGAA-----------------AA-----AGGCGTAGATAAGATGCA
s cb4.chrX              13568126 259 - 21540570 CAGTTG----------CCCATCTGTACCCCCTGTTG----------------------------------------------------GGGTCGCTC----------TCTcaatcacattttttctccCCATTCTTCTCTTTGCATACGGTGCAATACAGTG-----------------TACggtagagaaaaaga--ggg------cAACGCAAGAGACACAGTAAGAC----------ACACTGTAGAT-----GAATTTATTG------ATGAGACg--gtaaaaagagaaaagtgagagagaggGGCACGGTGTGT-TGTGTTGGGGTGTTGTCATACTGTGTGAATTA------------AAAACGAAATGCGTTAGATAAGATGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341216 195 +  4500979 TCGTCA-----------CCATCTG-----CCTCGTG----------------------------------------------------GACTCTCTT----------GTGTACGGGCAT------------------------AATACGGTGT-ATACAGTGTACGTTG-----CGAGATACGgtagagaaaaaaagtgag------agagaaaagagacaccGTAATGCC-AG--GGCAACACTGTAGAT-----CGATTC-CTG------CCGAGAGA--GT----------------------------------------------GTGTATGTATAC--GGTGAATTG------------AAAA------GTCGTAGATAAGATGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285551 202 - 33334924 TCGTCG-----------CCATCTG-----CCGT-TGT--------------------------------------------------CGACTCTCTC----------GTGCACT-GCGT------------------------GATACGGTGT-ATACAGTGTACGTGG-----CGAGAAACggtagagaaagaaagatgg------ACGAGAGAGCGACACCGTAGGAAATTG--GCCAACACCGTAGGA-CGCTCAATACAGTG------ACGAGAGA--GT----------------------------------------------GTATACTTATGT--GGTGAATCT------------GAAA-----GGTCGTAGATAAGATGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2847794 228 -  4147112 TCGTCA-----------CCATCCT-----CTTTCTGC--------------------------------------------------CgactctttctctttctcatgTTTGCG-GCGT------------------------AATACGGTGT-ATACAGTGTACGTGG-----CATGAAAcggtaaagaaaaaaagataggaGAAAAGGAGAGGGAGAGACTGTAGTGTCGAG--GCCAACACTGTAGAATCGGATGATACAGTGTTGGAAGTGAGAGACTGT----------------------------------------------GCGTATTTGTAT--GGTGAATTG------------AGAA-----AGACGTAGATAAGATGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   409052 295 +   435062 --------CCTTTTCTTccctttc-----ctttctttttctcaCAGTCTCTACAGTAATAAAACACGATATGTGCGAGGCCGTCGCCCGACTCTGCC----------GTGCACA-GTGC------------------------GATACCGTGT---ACAGAGTACGGTGGTGCACAGAGGACggtagagaaaaagagagCG----------ACGAGAGACACCGTAATGTGCTGATGGTCACACTGTAGAA-CGATCAATTTTGTA------GCGAAAGA--AA--------------------AAGGTGCggggtgtgtgtgtgtgtatttGTATGTGTAc--ggtgaaatgaaatgaaaacgaaaaa-----aaaaaaagataagagGCG
i caeJap4.Scaffold18190 I 17 I 42

a score=14550.000000
s ce10.chrX              2090788 48 + 17718866 TGCCGTACTCATTTCAAA-ACG-GCACTCGTGACAGTAATCTAAATGTTG
s cb4.chrX              13568385 47 - 21540570 T--CGGTGCGATTAGATAGTCG-ACACTCGTGACAGTAATCACATTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341411 44 +  4500979 T--CGCCTCGATTAGATA---G-ACACTCGTGACAGTAATCAACATTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285753 44 - 33334924 T--CGTTTCGATTAGATA---G-AAACTTGTGACCGTAATcacaaatgtt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2848022 45 -  4147112 T--CGCCTCGATTAGATA---GAAAACTCGTGACCGTAATCGCAACCTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   409347 42 +   435062 I

a score=-3039.000000
s ce10.chrX              2090836 2 + 17718866 CG
s cb4.chrX              13568432 1 - 21540570 C-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341455 1 +  4500979 C-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285797 2 - 33334924 tt
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0       2848067 2 -  4147112 TG
i caePb3.Scfld02_0      C 0 I 56
s caeJap4.Scaffold18190   409389 2 +   435062 CG
i caeJap4.Scaffold18190 I 42 C 0

a score=-11872.000000
s ce10.chrX              2090838 74 + 17718866 GGTAGAAAACA-CAAAAATATAATCAACAAAAATTATTTAGGCGATACGAGAA-----ATAACAA--ACAAATTTTTTAA-AT
s cb4.chrX              13568433 59 - 21540570 -------AACATCAGTTTTGGGGCGAATAAAATT------------GAGAGAAGTAGCAGAACAA--ATCGAcagtaata---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341456 54 +  4500979 -------AACA--AATATTGTTGCgaattgaaac-------------agagaaata--cgaacga--aaaaaaactttca---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285800 54 - 33334924 ---------caatgaattaaATGAGAATTGAAAC-------------CGACAA-----GGAACAATCAAATAAGTTATCAA--
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold18190   409391 60 +   435062 GAAAGTGAGcttgaaattctaaaaaaaaacaaat-------------acgcaa-----aaaaaaa--acaaaaatttcta---
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2848069 56 -  4147112 I

a score=146633.000000
s ce10.chrX              2090912 244 + 17718866 TTTTTCAGACTGAAAGGCAACCTCAAGAAGCATCTTCGCACACACGTCACGACGAAGGAAGAGCTGGAAGCTGCCTGGAGGCCGTTTGCCAGGTTTGATCT--------TAACAAAAACGGAACGCCAGTATTGGCAAAATCTCGGTTCAGCAACCGTCGGCCGCCTGCTGACATCCCTGACGACGCCATCGTACTTCGTGGAGC---CGGAGGACCGTACTACACGCCGCCGCCTCGTCCGAAGAAGAAGTAAG
s cb4.chrX              13568492 244 - 21540570 tttttcagtctgAAGGGTAATCTGAAGAAACATCTCCGCACACATGTTACCTCAAAAGAAGAGCTTGAAGCAGCATGGCGACCATTCTCCAGGTTTTTTGTac----taaatcaaaaatcaaaataccatatt-------tttggtttcagtAACCGCCGTCCACCAGCAGACATCCCAGAGGATGCTATTGTAGTTCGAGGAACGGGTGGTGGACCATACTACACCCCACCACCACGACCAAAGAAGAAGTaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4341510 244 +  4500979 caTTTTAGGTTAAAAGGAAATCTAAAAAAGCATCTCCGAACACACGTTACGACAAAGGAAGAGCTGGAGGCTGCTTGGAGGCCGTTTGCAAGGTTTGATAT--------TACTAAAAACCGAACGCCTATATTGGGTAACTCTCGGTTCAGCAATCGACGACCGCCAGCTGATATACCAGATGACGCCATCATTGTACGTGGAGC---CGGAGGACCTTACTACACACCGCCCGCTAGACcaaagaaaaagtgag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    285854 238 - 33334924 TGATTCAGACTCAaaggaaatttgaagaaacatTTGCGGACGCATGTTACGACGAAAGAAGAGTTGGAAGCCGCTTGGCGACCTTTTGCAAGGTAAACTCA--------CACCGAAGA--AAACTCTTTTAAC----ACATCACTGTTTAGCAATCGTCGACCGCCGGCTGATATTCCAGAGGATGCAATTATTGTTCGCGGAGC---AGGAGGACCCTATTACACGCCTCCACCAAGGttaaagaagaagtgag
i caeSp111.Scaffold629  C 0 I 31
s caePb3.Scfld02_0       2848125 193 -  4147112 tttttcaggctCAAGGGTAACCTAAAAAAGCACCTGCGGACACATGTaacaacaaaagaagaacTAGAAGCCGCATGGAGACCTTTTGCA-----------------------------------------------------------AGTAATCGGCGACCACCTGCTGATATTCCGGATGATGCCATTGTTGTCCGTGGGTC---AGGTGGACCGTATTTTACTCCTCCtgccaaaataaaaaagaagtaat
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold18190   409451 244 +   435062 ---taCAGGTTAAAAGGAAATCTCAAGAAACATCTGCGAACACATGTGACTACAAAGGAAGAGTTGGAAGCTGCGTGGCGACCTTTTGCCAGGTTTGATTAAccatttaaattaaaaatacaaaccGTATAA-----AATTCTCGGTTCAGCAATCGCCGCCCGCCTGCTGATATTCCGGAGGACGCTATCATTGTTCGGGGAGC---CGGAGGACCGTACTACACACCGCCGCCACGGCCAAAAAAGAAGTGAG
i caeJap4.Scaffold18190 C 0 C 0

a score=-14859.000000
s ce10.chrX              2091156 42 + 17718866 CAGACATCCAGCATGCACAATTAAAATGTGAGATTAC---------CGAAT
s cb4.chrX              13568736 30 - 21540570 -----attttttattcaaaa-gcTGAT-TAAGGCGAC--------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   4341754 25 +  4500979 -----g------aatTAAGA-GAAGATCTGAGACAAT--------------
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       2848318 39 -  4147112 ------TGTGAACTGTAGCA-TAAGTTGCAATACATTGTTACGTCA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   409695 28 +   435062 --------GAGGATCAAAAA-GTAGTTTTTactaaat--------------
i caeJap4.Scaffold18190 C 0 C 0
e caeSp111.Scaffold629    286092 31 - 33334924 I

a score=133302.000000
s ce10.chrX              2091198 194 + 17718866 --GTTTTTTTTCAGGAAGCTTGGACTCGGAGAACCAGAGCACTGGGTGGACAAGTTGAGAAGAGGAGATCTTCTGCCACAAGTTGAGCTTGAGGACAAGATCAGACGTCTCGAAGACACTATCTTCAACAACATGTCTCTTGAGCGTTGGGGCAACCTTTTCGAGATTGCAAAGTCCATTGCATTCGAGACGTGAG
s cb4.chrX              13568769 190 - 21540570 --TTTTT----CAGGAAACTTGGTCTTGGAGAACCAGATATGTGGGTCGACAAGCTTAGACGTGGAGATTTGCTGCCACAAGTCGATCTAGAGGATAAATTAAGGCGACTAGAAGACACAATTTTCAATAACATGTCTTTGGATAGATGGGTTAATCTCTTTGAGATCGCCAAGTCAATTGCATTTGAAACGtagg
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   4341782 194 +  4500979 --TTTTGGTTACAGGAAACTTGGATTGGGAGAACCAGAACAATGGGTTGACAAGTTGAGAAGAGGAGATATTCTTCCACAAGTGGAGCTTGAGGACAAGATTCGCCGACTGGAAGACACGATCTTCAACAACTTGGCATTAGAAAGATGGGCCAACCTATTCGAGATCGCAAAGTCAATTGCATTCGAGACGTaag
i caeRem4.Crem_Contig0  I 3 I 97
s caeSp111.Scaffold629    286123 194 - 33334924 --attttattttaggaAGCTTGGTTTGGGTGAACCTTCACAATGGGTTGATAAACTCAGAAATGGAGATCTTCTACCGCAAGTTGAACTGGAAGACAAGATTCGTCGTCTCGAGGACACGATTTTCAACAATATTTCACTTGAAAGATGGTCTAATCTGTTTGAGATTGCAAAATCAATCGCTTTTGAAACGTGAG
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_0       2848357 191 -  4147112 -----TTGTTACAGGGGGTTCGGCCTTGGGGAACCAGGACAATGGGTTGAAAAGCTGCAAACTGGAGATCTGTTGCCTCAGGTCGAGCTTGAAGAAAAGATTCGACGTTTGGAGGACACCATCTTCAACAATGCCACACTTGAGCGTTGGTCCAGCTTGTTCGAGGTTGCAAAGTCGATTGCTTTTGAAACGTACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   409723 196 +   435062 tttcatttctgcAGGAAGCTGGGACTTGGTGAGCCCGAGCAATGGGTGAATAAGCTACAAAATGGAGAGATTCTACCCCAAGTCGAGTTGGATGATAAAATACGGCGCCTGGAAGATACTATTTTTAATAATGTCTCGATAGATAGTTTAGGAACTTTGTTTGATATTGCCAAGTCAATAGCTTTTGAGACGTAAG
i caeJap4.Scaffold18190 C 0 C 0

a score=607.000000
s ce10.chrX              2091392 2 + 17718866 TT
s cb4.chrX              13568959 2 - 21540570 ta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    286317 2 - 33334924 TT
i caeSp111.Scaffold629  C 0 I 89
s caePb3.Scfld02_0       2848548 2 -  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   409919 2 +   435062 TT
i caeJap4.Scaffold18190 C 0 I 42
e caeRem4.Crem_Contig0   4341976 97 +  4500979 I

a score=-492.000000
s ce10.chrX              2091394 40 + 17718866 TATTTATCCTTGAACTGAAAAGAAATC---GGAGTGGAAAATG
s cb4.chrX              13568961 37 - 21540570 ----ttttttttaatggataAG--ACTCAAAAGGCAGAGAATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2848550 31 -  4147112 -------GTTTAGGCTGAGAAA--ATT---AGGAAAGAAAGTG
i caePb3.Scfld02_0      C 0 I 314
e caeJap4.Scaffold18190   409921 42 +   435062 I
e caeSp111.Scaffold629    286319 89 - 33334924 I
e caeRem4.Crem_Contig0   4341976 97 +  4500979 I

a score=-1574.000000
s ce10.chrX              2091434 408 + 17718866 CCGTTTGAGCACATGAATTCTCAGAA-TTACGGTACATATTATATACATACCTGCTCT--CCGTGCGTTT-GAG---AAAGATTTGACATCAATT--------------CAAATTTTTTGCAACAGTTTCGCTACGAAATTTCGTCAAATTTTGATTGAATTATTATCTTAAAAGAGAGCGTACTTTATAATTTGTTTTAAAATGGCTGGAAGATTGTTGAAAGCATAGAAAGCATCAAAAAGTGAATGTAGGACTGAAAGT--GAGTATAAGTATAATATCTGA--AAAGCGCT--CGGTGTGcggcaaatttgccgaatttgccgaa--ttcatcgaattccgtaaatttcaaaaatg------------------tagacttgccgaatctgccg----------------agcccggcaaat-----actgaa--atttgccgcacacatgaaacaatttttataaaa--------atttt---g
s cb4.chrX              13568998 452 - 21540570 CCAATT-------CGGATTCTCTGAAGTTATCgtaaaactctaatagaaggcaaCTTTATCATTGCGTTCCGAGCCTAATTATCTTAATTTAATTTCTAAGACAGATAACATAATTTCTAAGACAGATA----ACAAAAATCCgccag---ctgataaaatatttttcataa--------------tgttatcagcattttatcagttgacacgcTTTTGATATCACACATAG----AAAttgggataattgagctcacagtATGAGTATAGGGA-AACCTCTtattaaagtgtttacggtatcaaGAAATTTTGTCAAACTTTCCCAACCTTCAGGGAAGt---tgtatctcaaaaaaaaccgcaCTTAAAGTAGGTCAGGCGGACCTAAGCTACCGTTAGATCAACGCTCGAAATTGGATAAATGGAAAACTgagggattttctgaatat-caaaACAGCTCTGACAAAATGCAGCACATTTTCTCG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2848581 314 -  4147112 I
e caeJap4.Scaffold18190   409921  42 +   435062 I
e caeSp111.Scaffold629    286319  89 - 33334924 I
e caeRem4.Crem_Contig0   4341976  97 +  4500979 I

a score=0.000000
s ce10.chrX              2091842 374 + 17718866 tacaaaactaatggttttgaacagaaacctaatgaaagtaaacataacatcgtgtttcttttattttttattgaagaaatccacacgcgcattaggcaaaattcgaacaaaaaccagtaaacgtagtttattttttaaatcaattttggccctctttgagctcgaaaaatattgcgatttactgagtatgacaaccatggcaaatttgccgaatttgccgcacacccatgGTGCGATTCATTTCCTAATATATGCCTGGGTTTGTATACTTATTGAATTTTTTTGAACCAACTGAGTTGTAAGCTCCCAAAATCGAGCAGTGCATTACTAATAGAACTAATAGAACTATTATAATAGAAGAGAACACATTACAC
e caePb3.Scfld02_0       2848581 314 -  4147112 I
e caeJap4.Scaffold18190   409921  42 +   435062 I
e cb4.chrX              13569450   0 - 21540570 C
e caeSp111.Scaffold629    286319  89 - 33334924 I
e caeRem4.Crem_Contig0   4341976  97 +  4500979 I

a score=500.000000
s ce10.chrX              2092216 10 + 17718866 AGTTTAAATT
s cb4.chrX              13569450 10 - 21540570 AGTATAACTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2848581 314 -  4147112 I
e caeJap4.Scaffold18190   409921 42 +   435062 I
e caeSp111.Scaffold629    286319 89 - 33334924 I
e caeRem4.Crem_Contig0   4341976 97 +  4500979 I

a score=-1205.000000
s ce10.chrX              2092226 21 + 17718866 AAAATTTTCATTAAACCTACC
s cb4.chrX              13569460  9 - 21540570 --acgattttc----------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629    286408 20 - 33334924 AAAcgtttcacaaaaaatac-
i caeSp111.Scaffold629  I 89 C 0
e caePb3.Scfld02_0       2848581 314 -  4147112 I
e caeJap4.Scaffold18190   409921 42 +   435062 I
e caeRem4.Crem_Contig0   4341976 97 +  4500979 I

a score=0.000000
s ce10.chrX              2092247 1 + 17718866 T
e caePb3.Scfld02_0       2848581 314 -  4147112 I
e caeJap4.Scaffold18190   409921 42 +   435062 I
e cb4.chrX              13569469 1 - 21540570 I
e caeSp111.Scaffold629    286428 0 - 33334924 C
e caeRem4.Crem_Contig0   4341976 97 +  4500979 I

a score=1446.000000
s ce10.chrX              2092248 3 + 17718866 AAT
s cb4.chrX              13569470 3 - 21540570 att
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   4342073 3 +  4500979 att
i caeRem4.Crem_Contig0  I 97 C 0
s caeSp111.Scaffold629    286428 3 - 33334924 aat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2848895 3 -  4147112 aat
i caePb3.Scfld02_0      I 314 C 0
e caeJap4.Scaffold18190   409921 42 +   435062 I

a score=98073.000000
s ce10.chrX              2092251 117 + 17718866 TTCAGCCATGATTGTCCAGTGTGCAAGTCTCAATTCATGACCAGAATGGATTGTGTCAGCCATCACACACTCGAACACGAAAATCATCGGGAGGGTCTTGAATTTTTCTGCGAAGTG
s cb4.chrX              13569473 117 - 21540570 ttcagacatgaATGCCCAGTGTGCAAATGTCAGTTCATGACTCGAATGGATTGTATGAGCCACCACAGCATCGAACATGAGAACAGTCGAGAAGGACTTGATTATTTCTGTGAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4342076 117 +  4500979 ttcagacacgaCTGCCCAATCTGCAAAGTGCAATTCATGACAAGAATGGATTGCATCAGTCATCACAGCATCGAGCATGAGAACAGTCGTGATGGTCTTGACTATTTCTGCGAGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    286431 117 - 33334924 ttcagACACGACTGCCCAATTTGCAAAGTTCAATTCATGACTAGATTGGACTGTGTCACCCATCATTCCATTGATCATGCAAACAGCCGGGAGGGACTCGAGTTTTTCTGCGAAGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2848898 117 -  4147112 ttcagacaCGACTGTCCAATTTGCAAAATCCAATTCATGACCAGACTGGATTGTCTCACTCATCATACCATTGAACAtgggaacaaaaatgaaggaCTTGCCTATTTTTGCGAGGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   409963 117 +   435062 TTCAGACACGAATGCCCAACGTGCAAAATTGCTTTCATGACTCGTCTGGATTGTATGAGCCATCACAGCATCGAGCATGAAAACAGCCGCGAAGGGCTCGACTATTTCTGCGAGGTA
i caeJap4.Scaffold18190 I 42 I 53

a score=2820.000000
s ce10.chrX              2092368 3 + 17718866 AGT
s cb4.chrX              13569590 3 - 21540570 AGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4342193 3 +  4500979 AGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    286548 3 - 33334924 AGT
i caeSp111.Scaffold629  C 0 I 38
s caePb3.Scfld02_0       2849015 3 -  4147112 AGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   410080 53 +   435062 I

a score=-1119.000000
s ce10.chrX              2092371 3 + 17718866 TCT-
s cb4.chrX              13569593 3 - 21540570 -TTT
i cb4.chrX              C 0 I 634
s caeRem4.Crem_Contig0   4342196 3 +  4500979 -CTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2849018 3 -  4147112 ACT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   410080 53 +   435062 I
e caeSp111.Scaffold629    286551 38 - 33334924 I

a score=-2195.000000
s ce10.chrX              2092374 67 + 17718866 --------------------------ATAACGTTGTAATTTGAGTGGTTTTCTGTCTGTGGGATGATTGAAAA---TTTGTTATTATTGTTGGATT
s caeRem4.Crem_Contig0   4342199 56 +  4500979 --------------------------ACA-------TATTTCCGTGGTTTGAAATATGTGTGATGATTCAAATGCATGTGTC-------TCAAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2849021 76 -  4147112 GTTTCTAGCTCTactattgaacaaaaaca-------ggCTTTAGTCGTC---AATGTGTTGAGTTACTTACAT---TATGTT-------TCTGCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   410080 53 +   435062 I
e cb4.chrX              13569596 634 - 21540570 I
e caeSp111.Scaffold629    286551 38 - 33334924 I

a score=-3007.000000
s ce10.chrX              2092441 18 + 17718866 TACGATACAATATATATT-
s caeRem4.Crem_Contig0   4342255  5 +  4500979 --------------TATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    286589 18 - 33334924 TATAATCccat-cttgttt
i caeSp111.Scaffold629  I 38 C 0
s caePb3.Scfld02_0       2849097 18 -  4147112 CAAGAAACAAT-TACCtcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   410080 53 +   435062 I
e cb4.chrX              13569596 634 - 21540570 I

a score=964.000000
s ce10.chrX              2092459 2 + 17718866 TT
s cb4.chrX              13570230 2 - 21540570 tt
i cb4.chrX              I 634 C 0
s caeRem4.Crem_Contig0   4342260 2 +  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    286607 2 - 33334924 tt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2849115 2 -  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   410080 53 +   435062 I

a score=60353.000000
s ce10.chrX              2092461 111 + 17718866 TTCAGAAATGCTATAGACCATTTGCTGACGAGGCCAGCTACAATCAGCACATGAGCTACCACACGCGAGTTAGCAGTTTGATTGAAACTGGAGAAATTGTTGTACGTT-------TAC
s cb4.chrX              13570232 118 - 21540570 tttagaaatgctTCCGACCGTTCGCTGACGAGGATAGCTACAATCAACACATGGAGTACCATGCCAAAGTCGCCAACCTTATTGACACTGGAGCAATTTTGGTGAGTTCTTAACGTTT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   4342262 111 +  4500979 TTCAGAAGTGTTTCCGGCCATTCGCAGACGAAGGAAGCTTCAATCAACATATGAGTTATCATAATAGAGTGACCAACCTGATCGAGACTGGAGTGATTACTGTTGGTT-------TAT
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629    286609 111 - 33334924 ttcagaagtgcTTCCGTCCGTTTGCCGATGAAGCGAGTTACAATCAACACATGAGTTATCACACTCGTGTACTTCAAATGATTGAATCAGGAACAATTCGGGTATGTt-------cac
i caeSp111.Scaffold629  C 0 I 28
s caePb3.Scfld02_0       2849117 110 -  4147112 ttcagaaatgctTCCGTCCATTTGCCGATGAGAGTAGCTTCAATCAACACATGAGTTATCATACTCGTGTTGTAGATTTGATCAACAACGGAACCATCGTGGTCAGTT-------TA-
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18190   410133  98 +   435062 ttcagaaatgctTCCGACCGTTTGCCGACGAAGCGAGTTTTCAACAGCATCAGAGTTATCACGCACGTGTTAGCAGCATGTTCGACAGCGGAGCAATT--------------------
i caeJap4.Scaffold18190 I 53 C 0

a score=0.000000
s ce10.chrX              2092572 39 + 17718866 AAAAGTTAATATTTGAACAAATAACTAAAGCTCACTTTT
e caePb3.Scfld02_0       2849227 30 -  4147112 I
e caeJap4.Scaffold18190   410231  0 +   435062 C
e cb4.chrX              13570350 25 - 21540570 I
e caeSp111.Scaffold629    286720 28 - 33334924 I
e caeRem4.Crem_Contig0   4342373 29 +  4500979 I

a score=-136031.000000
s ce10.chrX              2092611 621 + 17718866  
s cb4.chrX              13570375 500 - 21540570  
i cb4.chrX              I 25 I 4
s caeRem4.Crem_Contig0   4342402 546 +  4500979  
i caeRem4.Crem_Contig0  I 29 I 10
s caeSp111.Scaffold629    286748 565 - 33334924  
i caeSp111.Scaffold629  I 28 I 7
s caePb3.Scfld02_0       2849257 551 -  4147112  
i caePb3.Scfld02_0      I 30 I 38
s caeJap4.Scaffold18190   410231 649 +   435062  
i caeJap4.Scaffold18190 C 0 C 0

a score=-7176.000000
s ce10.chrX              2093232 42 + 17718866 ---ATTTTGATACGTTTGAAACAA---AATGGAATGAAT-AGCCTGGTA
s cb4.chrX              13570879 21 - 21540570 ---attttaataaatttttcacaa-------------------------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   4342958 21 +  4500979 ---ATGTTTATAAAGTTATaagga-------------------------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629    287320 17 - 33334924 ---AATTCCATAAGTTGGTG-----------------------------
i caeSp111.Scaffold629  I 7 C 0
s caeJap4.Scaffold18190   410880 49 +   435062 atggttTTATTGAATATCTAGTAATGAGATGGAACAAGTCAAACTTGCA
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2849808 38 -  4147112 I

a score=20908.000000
s ce10.chrX              2093274 146 + 17718866 TCCAGAATATGCAAATGCAAAAACTTGTTGAAGCGGTAGCAAGGATCAGATAA-TACAAATGAAAGTGG-TTTGAAGTGAAGATTGGGAAGGAGTAGGA---------CAAC----TTCCGGAACATACCGATCAGAGTTTTAGATAACACA---TGTTGTATA
s cb4.chrX              13570900 118 - 21540570 ------CTCTACCAGC---TAAACTTGTAAAAAGATTAAGATCG-TcccaggaaaaaaaaggaaagtggTTTT-----------------------GGA---------CTAG----TTCCGGAACATACCGATCGAGATTTTAGATAAGTTTAGCAGCAGTATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4342979 104 +  4500979 ------gaaaacga------aaatttgtgAATACGATAA--------CCAtcataaaaaccaaaagtgG-TTT-----------------------GGA---------CTAG----TtccggaatattccgatcaaGACTTCAGATAAGTAT---GCTAGTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    287337 111 - 33334924 AACACAGAAAACATGC---TTAACTTGTGAATGAGATAC--------Agatca-gaaaatggaaagtga-ACT-----------------------GGA---------CTAG----TTCCGGAACATACCGATCAAGATTTCAGATATA-AC---ATTAGTATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2849846 112 -  4147112 TCCATTAAAAGCAAGC---ATAGCTTGCCAGAAAGATAT--------ACATCA-GGAAATAAAAAGTAA-TTT-----------------------GGA---------CTAG----TTCCGGAACATTCCGATCAAGATTTTAGATAAGCAA---AGTAGTATA
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold18190   410929 105 +   435062 -----------------TCCTGGCTT-TCAAAGCGATAA--------TGATCT-GGAAATTGAAAGTGG-TTC-----------------------GAAACTACTATCCTAGAAAATCCGGGAACATGCCGATCAAG-----AGATATTGAA---AGTAGTATA
i caeJap4.Scaffold18190 C 0 I 22

a score=-5764.000000
s ce10.chrX              2093420 22 + 17718866 TA----AGACGGTAGTGGGGTACAAC
s cb4.chrX              13571018 22 - 21540570 AA----AGGATAGTCCGCATTAGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4343083 23 +  4500979 AAAGACAGGAAAG---GTTTTACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    287448 21 - 33334924 AA----AACGAAGTA-GCCTCATGCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2849958 22 -  4147112 TA----AATAAAGAGTGTATCCGACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   411034 22 +   435062 I

a score=800410.000000
s ce10.chrX              2093442 1239 + 17718866  
s cb4.chrX              13571040 1305 - 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   4343106 1416 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold629    287469 1419 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2849980 1340 -  4147112  
i caePb3.Scfld02_0      C 0 I 144
s caeJap4.Scaffold18190   411056 1451 +   435062  
i caeJap4.Scaffold18190 I 22 C 0

a score=62483.000000
s ce10.chrX              2094681  97 + 17718866 AGCT---------------CCAAAG----------------------------------------------------------GGAGATACCACATATCCAACAAAGAACCGTGCCAGATTTACCGCCCGTCAACGTGCTGTTTCCCGCATTCGCAGAACTTTCTAA----------TTG
s cb4.chrX              13572351 143 - 21540570 AGCC---------------CCAGCTGGAGCAGGAGGAGGAGAGACACCAGCCGG------------------AGGAT----CTGGCGATGTTACCTATCCAACTAAGAACCGAGCTCGTTTTACCGCTCGTCAACGTGATGCTTCTCGCATTAGCAGAACTTTctaattgaacattttca
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   4344528 128 +  4500979 AGCA---------------CCAGCTGGAGCAGGAGGTGGATCTAC---------------------------TGGAT----CAGGAGATACTACTTATCCAACCAAGAATAGAGCTAGATTCACTGCTCGTCAACGTGCCGCTTCTCGCATTCGCAGAACTTTTTAA------ACATTCG
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629    288888 151 - 33334924 AGCT------------GCACCAGCCGGTTCTGGTGGAGGATCATCGCCATCTGGAACTGCTGATGAAGGAACTGGAT----CTGGAGATGTCAACTACCCAACCAAGAATAGAGCCAGATTCACTGCTCGTCAACGTGCTGTTTCTCGCATTCGCAGAACTTTCTAA-------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2851464 106 -  4147112 AGCT---------------CCAGCC------------------------------------------GGATCTGGAT----CTGGTGATACTACATACCCAACCAAGAACAGAGCTAGATTCACTGCTCGTCAACGTGCTGTTTCTCGCATTCGCagaactttctaa-------------
i caePb3.Scfld02_0      I 144 C 0
s caeJap4.Scaffold18190   412507 142 +   435062 AGCTGGCGGCCAAGGTGCACCAAGTGGTTCTGGTAGCGGAGCCCCAA-------------------------GTGACACTGCTGGAGAAACCAACTATCCAACTAAGAACAGAGCCAGATTTATTGCTCGTCAGCGTGCTGCTTCTCGTTTCCGCAA---CTTCTAA----------TTG
i caeJap4.Scaffold18190 C 0 I 12126

a score=-14312.000000
s ce10.chrX              2094778 91 + 17718866 TCTCTTTCTGATT--TTGGTTACAAACATCAAATGTTTCAAATAAATAATTCAGCATT---TCAAATTGTTTA------TTTAATAAAAAAAACACAAATTT
s cb4.chrX              13572494 86 - 21540570 tgTTTCACTAATT--GGGTTTTCTAAT---AAATT-TTGTGTcggaaaa-gtgatttt---tttagttttcga------taTGAAAAACAATACGCAGATTT
i cb4.chrX              C 0 I 1585
s caeRem4.Crem_Contig0   4344656 87 +  4500979 CATTTCACT---------TTTATTTAT---AAATcattctgataaaaaatgttattttaacTTGGATTCACGCCACTt-taagaaagagaaagaacagTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    289039 75 - 33334924 ---TTTACTGAGT--ATTGTTATTGAT---AAAGG-----GATAATAAACATGG---T---TCAGGTTATTTCCGATCGTCTAGCACAAAATAT--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2851570 78 -  4147112 ---ttttttaatgcaaacatttttgat----aagg-----GTTAATAAAAAtggtatt---tcaaaatttttattatt-tgtaACATGCAATAT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   412649 12126 +   435062 I

a score=-1177.000000
s ce10.chrX              2094869 17 + 17718866 AAACTATATCAAATAAT
s caeRem4.Crem_Contig0   4344743 16 +  4500979 -GTCcaattcaaatagt
i caeRem4.Crem_Contig0  C 0 I 5657
s caeSp111.Scaffold629    289114 11 - 33334924 ------TATCAGATAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2851648  7 -  4147112 ------GTTGAAA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I

a score=-2446.000000
s ce10.chrX              2094886 58 + 17718866 ATGAACGGGCTCCATATTCAAACAAAGTTTTGGAATAAACAAATTAGATTTTTCTGAT
s caeSp111.Scaffold629    289125 27 - 33334924 ------------TATGTTTA-------TCACGTGATGAACA--ATGAG----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2851655 36 -  4147112 ---------------AGCTA-------TCACAAGATAAAGAAGataagtttttcagtt
i caePb3.Scfld02_0      C 0 I 53
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=253.000000
s ce10.chrX              2094944 27 + 17718866 TTATCAC--------AGATGT-TGTTCGACCGAGCT
s caeSp111.Scaffold629    289152 36 - 33334924 TGATCACAATATAATAGATACAAGTTTGACGGAGAT
i caeSp111.Scaffold629  C 0 I 179
e caePb3.Scfld02_0       2851691 53 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=0.000000
s ce10.chrX              2094971 71 + 17718866 TTTGTATTGGAATTGTAATCTTTTTTGGCATGTGAGCTTGGAACGTAATTACAAACTCCATTTCTATGCAA
e caePb3.Scfld02_0       2851691 53 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeSp111.Scaffold629    289188 179 - 33334924 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=1017.000000
s ce10.chrX              2095042 23 + 17718866 GGTTGTATTGGTTTTCAATGAGC
s caePb3.Scfld02_0       2851744 23 -  4147112 GGTTATTttagttttcacaaaac
i caePb3.Scfld02_0      I 53 I 246
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeSp111.Scaffold629    289188 179 - 33334924 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=0.000000
s ce10.chrX              2095065 103 + 17718866 ATCTGCACAAAATAACGAGAACGGAGCATATAATTATTCTGAAATTATCAAAAATAAATTTACTCGAAATCATACTATTTTTTGGATGAACTAATACAAAGAA
e caePb3.Scfld02_0       2851767 246 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeSp111.Scaffold629    289188 179 - 33334924 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=1138.000000
s ce10.chrX              2095168 27 + 17718866 CAACTTTTTCAAAAACTTTGATATCTA
s caeSp111.Scaffold629    289367 27 - 33334924 caattttttggttAGCATTAATATCTA
i caeSp111.Scaffold629  I 179 I 80
e caePb3.Scfld02_0       2851767 246 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=0.000000
s ce10.chrX              2095195 82 + 17718866 TTTGCCATGTTACTAATGAAACACCTTGAAGTCAGAAATAGATGTATGCTTTGAAGCTAAATTTTATTTTAGAACGTCATAG
e caePb3.Scfld02_0       2851767 246 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeSp111.Scaffold629    289394 80 - 33334924 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=238.000000
s ce10.chrX              2095277 35 + 17718866 TACCTAAAATCAAT---AGAGATCCGTAAGTGATTATT
s caeSp111.Scaffold629    289474 38 - 33334924 TACATAAAAAGAATATCAGAATTCCGACGAAAATCCTG
i caeSp111.Scaffold629  I 80 C 0
e caePb3.Scfld02_0       2851767 246 -  4147112 I
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=-2013.000000
s ce10.chrX              2095312 45 + 17718866 AAAC--ATGGTGCTATGTTACATAAAAATAAAAATTCTGTGGTTACC
s caeSp111.Scaffold629    289512 34 - 33334924 AAACTTTTATAATGCCGGTA---AAAACTTCAATATT----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2852013 34 -  4147112 AAAC--ACAGATTTACGttc---aaaattacattttctG--------
i caePb3.Scfld02_0      I 246 C 0
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=0.000000
s ce10.chrX              2095357 3 + 17718866 ATC
e caePb3.Scfld02_0       2852047 0 -  4147112 C
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13572580 1585 - 21540570 I
e caeSp111.Scaffold629    289546 0 - 33334924 C
e caeRem4.Crem_Contig0   4344759 5657 +  4500979 I

a score=62812.000000
s ce10.chrX              2095360 489 + 17718866  
s cb4.chrX              13574165 570 - 21540570  
i cb4.chrX              I 1585 I 1221
s caeRem4.Crem_Contig0   4350416 594 +  4500979  
i caeRem4.Crem_Contig0  I 5657 I 5
s caeSp111.Scaffold629    289546 533 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2852047 572 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   412649 12126 +   435062 I

a score=12084.000000
s ce10.chrX              2095849 155 + 17718866 TAATCACGTTTTAAAAATAATTTGAA------------ATCAGCTTACATCGACAACGATATCAACATCACAATCGGCAAAATTTCATATTTTGTGGAAGGAACAGGGGTTAATTCATCATTACT--GTTTGTTGAA----CGCAATGCAATATTATCAAAATCAGTAAGCAT
s caeRem4.Crem_Contig0   4351015 160 +  4500979 -------------taaacaattgaaaaaaatcagttgtaCAAACTTACATAGAACAAGATATGAATACAATGATTTGAATCAATCCGTATTCTTGCACAGATTCAGATTTGATgctcttgttttttattttatcgtATTCTTCCATGGAAAGAGCATCCAACTCAATTACCAT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629    290079 161 - 33334924 ----gaacTGTTATGTGTAATTTAAG------GATTTT--AAACTCACAATGACAAAGATATAAATATTATTACTTGCATCGTACCGTAGTTCTGTACAGGCTCTGAGATAACATCATCGTTTCTAATCTTTTTGTAGTCTTCCATCGTTATTGCATCTAATTCTATTACCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2852619 163 -  4147112 ------ATTGTTCTGATTATTagaag----ttgtttttcaaaactcacaaagaTAAGGCTATAAACACAACTACTTGTATCATTCCATAGTTTTGAGCTGGTTCCGATAGAACATTTTCGCTTTTTAGTTTGCCATAGTCTTCCATCGTGATAGCATCCAGTTCGACGATCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   412649 12126 +   435062 I
e cb4.chrX              13574735 1221 - 21540570 I

a score=31029.000000
s ce10.chrX              2096004 63 + 17718866 TTGATTTTCTAAATCAGCCAGCTTGGAAAACGTAAGATCAGGTATCATGCCAGTTTTTGCGAA
s caeRem4.Crem_Contig0   4351175 63 +  4500979 TCTGTTTTCAAGGTCagctagttttgaaaatgtcaaatcgGGCAGAATATTAGcttctttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    290240 63 - 33334924 TCTGTTTTCGAGATCTGCCAGTCTTGAGAATGTCAAGTCGGGTATGATATTAGactctttgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2852782 63 -  4147112 TCGGTTTTCAAGGTCTGCTAGTTTTGAGAACGTGAGATCGGGTATCATATTTGTTTCTTTGAA
i caePb3.Scfld02_0      C 0 I 72
s caeJap4.Scaffold18190   424775 63 +   435062 TTTAGTCTCAAAATCAGCTAACCTTGAGAATGTTAAATCAGGAAAGATATCTGTTTCTTTAAA
i caeJap4.Scaffold18190 I 12126 C 0
e cb4.chrX              13574735 1221 - 21540570 I

a score=2210.000000
s ce10.chrX              2096067 33 + 17718866 GAAAAAATTTTCCGGACGTT-CTGGTTTCTTCTG
s caeRem4.Crem_Contig0   4351238 33 +  4500979 -aatcaatgattCGGTTCTCATTggtttgttctg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    290303 33 - 33334924 -aattagggATTCACTTATTAATGGCTTCTTCTG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18190   424838 33 +   435062 -GTTAAAAGAATCTGGTCTGTCAGGCctgttctg
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2852845 72 -  4147112 I
e cb4.chrX              13574735 1221 - 21540570 I

a score=575.000000
s ce10.chrX              2096100 3 + 17718866 GAA
s caeRem4.Crem_Contig0   4351271 3 +  4500979 aaa
i caeRem4.Crem_Contig0  C 0 I 22
s caeJap4.Scaffold18190   424871 3 +   435062 aaa
i caeJap4.Scaffold18190 C 0 I 28
e caePb3.Scfld02_0       2852845 72 -  4147112 I
e cb4.chrX              13574735 1221 - 21540570 I
e caeSp111.Scaffold629    290336 0 - 33334924 C

a score=0.000000
s ce10.chrX              2096103 681 + 17718866  
e caePb3.Scfld02_0       2852845  72 -  4147112 I
e caeJap4.Scaffold18190   424874  28 +   435062 I
e cb4.chrX              13574735 1221 - 21540570 I
e caeSp111.Scaffold629    290336   0 - 33334924 C
e caeRem4.Crem_Contig0   4351274  22 +  4500979 I

a score=93.000000
s ce10.chrX              2096784 24 + 17718866 AAGTTGCTAT-ATTTTATTGCGAAT
s caeSp111.Scaffold629    290336 24 - 33334924 AACGTGTTATCATATTATT-CGACG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2852845 72 -  4147112 I
e caeJap4.Scaffold18190   424874 28 +   435062 I
e cb4.chrX              13574735 1221 - 21540570 I
e caeRem4.Crem_Contig0   4351274 22 +  4500979 I

a score=546.000000
s ce10.chrX              2096808 1 + 17718866 A
s cb4.chrX              13575956 1 - 21540570 A
i cb4.chrX              I 1221 C 0
s caeRem4.Crem_Contig0   4351296 1 +  4500979 a
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold629    290360 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2852845 72 -  4147112 I
e caeJap4.Scaffold18190   424874 28 +   435062 I

a score=-449.000000
s ce10.chrX              2096809 9 + 17718866 ATTTATTGG
s cb4.chrX              13575957 9 - 21540570 GCTCATGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4351297 9 +  4500979 aataattga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    290361 9 - 33334924 TGTTTTTGC
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold18190   424902 9 +   435062 ATTTCTTCA
i caeJap4.Scaffold18190 I 28 C 0
e caePb3.Scfld02_0       2852845 72 -  4147112 I

a score=17898.000000
s ce10.chrX              2096818 61 + 17718866 CTTACCTTGAAGATCCAACAATAGATTGTAAGCAAAACCAGTAGAACACAAGAAACCACGA
s cb4.chrX              13575966 61 - 21540570 CTCACCTTCAGAATCCAACAATATCCTGTGAAAAGTACAAATAGAATAACACCTATTGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4351306 61 +  4500979 cCTACTTTCAGTATCCAGCAATAAATAAGGAATAGGACAAAAAGAATAGTGCAGACCACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    290371 61 - 33334924 CTAACCTTTAAAACCCAAAAGTACAGTATCAAAAGACaagcaaaaataataaaaataacgA
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       2852917 61 -  4147112 CTAACCTTCAAAACCCAACAATATAAAAGGAATAAAGAAGTTAGAATGATGAAAACTGATA
i caePb3.Scfld02_0      I 72 C 0
s caeJap4.Scaffold18190   424911 55 +   435062 CTCACTTGGAAGATCCAACAGTAAATGCCAACTAAAAGAATGAGAGTAACTACAA------
i caeJap4.Scaffold18190 C 0 I 261

a score=8786.000000
s ce10.chrX              2096879 21 + 17718866 CATTTTGAAACCGGCTCATTT
s cb4.chrX              13576027 21 - 21540570 TGTTTCGTATCCGACCCATTT
i cb4.chrX              C 0 I 266
s caeRem4.Crem_Contig0   4351367 21 +  4500979 TGCTTCGTAGACGGGTCATTA
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold629    290432 21 - 33334924 TATTCCGTAGTCGGATCatta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2852978 21 -  4147112 TGTTTCGAAACCGGTTCATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   424966 261 +   435062 I

a score=-14462.000000
s ce10.chrX              2096900 103 + 17718866 -----------------------------CAGG-------CCCAACGTCACAAAAATAAATATTTGGTTCAATA-------GAAGCTCACCAAGTGGGTTTCTTC---------------AGGATTTT-------ATA-------TTGGGTGATGGCCG-------AATTTTTGAAGAACGA---
s caeRem4.Crem_Contig0   4351419 132 +  4500979 -----------------------------CAGCAACACTAttcagaaacaagaagatatagaataaaat------------aaagt---aaaaGTGGTTTCTTCTTTTGGGAATGGGACAAAGATTTGAACCAATGGA-------TGGGACGGAAGTAGTAAATATAA--TTTCAAGAACAACGA
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold629    290453 139 - 33334924 gatgaaaaataatagagaTGAAGAT--AATCG--------------AATAAAAGTGCAAGgaatgaaattcagaagtttGGAAGAC---ACAAGtgtgtttcttcttca--------acagaGA-------CAA-AGA-------TGAGCAGGAAGCagtaaataaaa-ttttgaagaacaa---
i caeSp111.Scaffold629  C 0 I 22
s caePb3.Scfld02_0       2852999 129 -  4147112 TTCGA------------GTGAATTTCGAACCGT-------TTCGGAAATAGTAGTTTGAATACTTCCGTCAAGA-------AAAAC---ACAAGTGGATTTCTTGTTAGGAC-----ACAAAGATT----CCAA-AGACTCACTTCAAGGAGGATGCAGTAAATATAA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   424966 261 +   435062 I
e cb4.chrX              13576048 266 - 21540570 I

a score=-1686.000000
s ce10.chrX              2097003 23 + 17718866 GTTAAAAAAGCAA------TTGTTAAACA--------------
s caeRem4.Crem_Contig0   4351551 27 +  4500979 ----------------GCTCAGTTGAGAAGTTTCTGTGCAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2853128 29 -  4147112 TTTTAAAGAACAACGAGTTtagttgagaa--------------
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18190   424966 261 +   435062 I
e cb4.chrX              13576048 266 - 21540570 I
e caeSp111.Scaffold629    290592 22 - 33334924 I

a score=4760.000000
s ce10.chrX              2097026 35 + 17718866 AAAATAAAAAATAAAGGGATATCACAA--------TTCTTGCA--------
s caeRem4.Crem_Contig0   4351578 43 +  4500979 ------GAGAATAAAAAGTGATcaaatacgttt--ttttcttcttctttct
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629    290614 44 - 33334924 GCAATAGAGGATAAAGAGTGATCAGAAAAGTTTACTTCTTTTCT-------
i caeSp111.Scaffold629  I 22 C 0
s caePb3.Scfld02_0       2853167 42 -  4147112 GCAATGGAGGATAAAGAGTgatcaaaaacgttt--tttcctTCT-------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18190   424966 261 +   435062 I
e cb4.chrX              13576048 266 - 21540570 I

a score=24447.000000
s ce10.chrX              2097061 35 + 17718866 ATCTTTTAACTTGCCGCCCATCCAAGTATATTTAA
s cb4.chrX              13576314 35 - 21540570 ATCTTTTAACTTGCCGCCCAACCATGCATGTTCAA
i cb4.chrX              I 266 C 0
s caeRem4.Crem_Contig0   4351623 35 +  4500979 cTCTTTTAACTTGCCGCCCAACGAAGCATGTTCAA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629    290658 35 - 33334924 GTCTTTCAACTTGCCGACCAGCCAAGCATGTTCAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2853209 35 -  4147112 GTCTTTCAACTTGCCGCCCAGCGAAGCATGTTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   424966 261 +   435062 I

a score=93858.000000
s ce10.chrX              2097096 396 + 17718866  
s cb4.chrX              13576349 409 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4351658 367 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold629    290693 392 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2853244 372 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   425227 374 +   435062  
i caeJap4.Scaffold18190 I 261 C 0

a score=-8175.000000
s ce10.chrX              2097492 31 + 17718866 AAAAATATTTTGCAAGATTTACAGCTTGTAG
s cb4.chrX              13576758 20 - 21540570 ---AATA------AACTTTTGTAGCTTTT--
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold629    291085 11 - 33334924 --------------------GCAGATAATCG
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0       2853616 11 -  4147112 --------------------GCATATTGTCA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18190   425601  3 +   435062 ---------------------TAG-------
i caeJap4.Scaffold18190 C 0 C 0
e caeRem4.Crem_Contig0   4352025 20 +  4500979 I

a score=314525.000000
s ce10.chrX              2097523 485 + 17718866  
s cb4.chrX              13576786 555 - 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   4352045 502 +  4500979  
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold629    291099 482 - 33334924  
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0       2853632 477 -  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18190   425604 470 +   435062  
i caeJap4.Scaffold18190 C 0 I 100

a score=11394.000000
s ce10.chrX              2098008 26 + 17718866 TTGGATAACTCTCGTATCGAG-----CTTTT
s cb4.chrX              13577341 30 - 21540570 TAAGA-AGCTCTGACAccaagaaactttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4352547 25 +  4500979 TAAGA-AACTTTCACACccaa-----ttctt
i caeRem4.Crem_Contig0  C 0 I 215
s caeSp111.Scaffold629    291581 25 - 33334924 TAAGA-AACTCTCACACCCAA-----CTTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2854109 25 -  4147112 TAAGA-AACTCTCACACCCAA-----CTTTT
i caePb3.Scfld02_0      C 0 I 495
e caeJap4.Scaffold18190   426074 100 +   435062 I

a score=-1809.000000
s ce10.chrX              2098034 2 + 17718866 ---CG
s cb4.chrX              13577371 2 - 21540570 tt---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    291606 2 - 33334924 -TG--
i caeSp111.Scaffold629  C 0 I 222
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=-1960.000000
s ce10.chrX              2098036 325 + 17718866 ATGTTAATCGGATAG--------TCAACGTTAGATATAATCAGTTGTCGGTGTAATCTGTTTCCATTTTATTTTTCGGAGCTACATCGATTATATAATTTTACCTGTGCGTGTTATAGATAAAGCTTCTAGACAAAATCGACGTTGagtggggaaagtatttgaaactactcctatggtgccacaa--tgacaaaatatgatagtaaaacttttcaaaaaAATGGAATATTTTCGAAaacatgcaaaattgctctggatttttttttcaaaaattgggcaattttccacaacttcggctgaaaattcaaaaaaaaatctaaagtgtttcattacg
s cb4.chrX              13577373 255 - 21540570 ctgttg---gaatagcttttgggtcaatttttgata-----agTTAA----------------------ACCTTTTGATGTAAGACCGATAGGAT--------------------TAGA--AAGTGacaggaaaaaataaa-----------aaaagagcttGAATTTGCAA--ATAGTGTCGTCAGCTACCGTAATACGTCATTTAGAAGTTTCACCTCTGTTTGGGGTTTTTGACTGTaaataaaattgtt--gaaatttctt-------------caattagTTGTGACTTCACTACAGtactgaaaaaatcatttttgactttttacAACG
i cb4.chrX              C 0 I 91
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeSp111.Scaffold629    291608 222 - 33334924 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=0.000000
s ce10.chrX              2098361 106 + 17718866 attttcgttctttatttttggaactttataaatgtgtttagacaaattccccaccggtgctattccacttctaaTGTTCTTTATAAAAGCTGCTAACAATTTCAAT
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e cb4.chrX              13577628  91 - 21540570 I
e caeSp111.Scaffold629    291608 222 - 33334924 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=-75.000000
s ce10.chrX              2098467 176 + 17718866 AATACGGATTTTGTAATGTATCTTAATTTTTGGTTGAATATGATTCCA--TTATCAAAGTTTTATGATTTGTTTTCCTAAAACTGTACAAATTCGGTTTCTACTCAATTTATAACTTTGGTATGTA--------TCACTAATACAAAATATTCG--AAACAAATTGGaaaat-----aaataaattttaattt
s cb4.chrX              13577719 170 - 21540570 AGCTTGacttttgtaattgaca--aattttttgt-----acgAATCCAACTTAACGAGATTAAACG-TTTG-------AAAGGGGCACAG-------CTCTCTTCAGTGT-TAATTTTGacatttccagaacttttgcTGGTTCAAACGATACGTCCAACcagcaaaaaaattctgcgaataatttttcaact
i cb4.chrX              I 91 I 52
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeSp111.Scaffold629    291608 222 - 33334924 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=0.000000
s ce10.chrX              2098643 65 + 17718866 tGAAAATCATCTGAATTGGGTTTTGGATTAGGCTCTTATATTTTGAGGATTTCGGCTTTTTTACA
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e cb4.chrX              13577889 52 - 21540570 I
e caeSp111.Scaffold629    291608 222 - 33334924 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=-610.000000
s ce10.chrX              2098708 264 + 17718866 AAATTTACAAAATTTTCTTTAAATGTTTTATTATGATATTCAGTCATTTGGCACCTTACGAATAATTTTTAATTATTTCCCAGTCCGAATTCCACCTTTGAAAGTGGGATAGCGTCGTGCGGAAATTTTTGCAAAAACTGATATGTTTCCAATT---TTCAAAAAATATTTTTAAAAAAGTAGAATTTTTTTGCAATTTTTCACCATAGGCATGTTTTTTTTAAGTGAACACTGGCGTTATTTCATTTTCAGCTGACTCCTGAGCTC
s cb4.chrX              13577941 177 - 21540570 aggttttcaaaatttact----atttttcactgcaaaat--------------------gaaaaat-----atggttttttagTCCGG--TACAGTAGTAAAGGCAAAACgg----atttaaaaattcctaca-----------GTTCTCAATTACtgtcaaaaattgggttttaaCAGGTA--------CTGCATGTT----------GCGTGATCTTTATG-------------GTTTTATCATTT-------------GAATTC
i cb4.chrX              I 52 C 0
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeSp111.Scaffold629    291608 222 - 33334924 I
e caeRem4.Crem_Contig0   4352572 215 +  4500979 I

a score=-3008.000000
s ce10.chrX              2098972 85 + 17718866 CTAAAGATGCGTTTTGaatttttaatttaaaaagtaaataat--aacttttatatCTCGG----TCTGCTCATACAACTCCA--------AAACTTCTA
s cb4.chrX              13578118 76 - 21540570 AAGATAAGTTAAATTTCTTGATTATCTCAAAAGTTACCAAAACcaaatgaaaagtttcaa-------------------cTAGGAA----ACACTTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4352787 94 +  4500979 ctgaaaacatctattggttttttgttctaa---tcaacaaaa--aattttgagatttcaacatttctctTCTTGATGCTCTACGAACGTGCCCTTTCTA
i caeRem4.Crem_Contig0  I 215 C 0
e caePb3.Scfld02_0       2854134 495 -  4147112 I
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeSp111.Scaffold629    291608 222 - 33334924 I

a score=-2805.000000
s ce10.chrX              2099057  5 + 17718866 -------TTT--TT
s cb4.chrX              13578194 10 - 21540570 AACACACTTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4352881 10 +  4500979 TATACCGCTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2854629  5 -  4147112 -------ttttt--
i caePb3.Scfld02_0      I 495 C 0
e caeJap4.Scaffold18190   426074 100 +   435062 I
e caeSp111.Scaffold629    291608 222 - 33334924 I

a score=1457.000000
s ce10.chrX              2099062 54 + 17718866 TCAGTTT--------CAA-------CAAAATAT--ATCATTTCACGCC---CCTTCTGACCTTTTGAGCTTGTC-------------
s cb4.chrX              13578204 75 - 21540570 ACCTTATTCTCCCGGTAG-------AACCATTT--AGCATTTTCATGT---TATCCTGACCTTTTGAGCATTTCTCCTCGCTTGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4352891 68 +  4500979 TCCTTTT--------TAG-------AAGCATATCACGCGTATTTTTCT---CCATCTGACCTTTTGGGCTTGTCTCTTT-CCTGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    291830 61 - 33334924 tcatttt------------------caacattc-------aTTTGTCTGTTTATACTGACCTTTTGGCCCTGTCTCTTT-CTTGTCA
i caeSp111.Scaffold629  I 222 C 0
s caePb3.Scfld02_0       2854634 82 -  4147112 tcaattttttgt---taggtCAATATATCATCCT-GAAATATTCGTGTTTCTATACTGACCTTCTGAGCTTGTCTCCTT-TCTGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   426074 100 +   435062 I

a score=90202.000000
s ce10.chrX              2099116 179 + 17718866 AAACGTTTCAAATCTCTTGTCTCCTCATCCCA-----TGG---------------------ATGTTGCAAAATAAGAGTCTC-TGCGTGATATATGCATGAAATCATCAATCATCCCTAC--------------CACACTCGGCACACTAAAA---------TGT--GTCTTCCACTAATTTC--TAACATCTAGGCTAAGCTCTTCGAGATTTTCACTCCTTTTG------------------CTCGT-----------TT
s cb4.chrX              13578279 212 - 21540570 AAACGTTTCAAA--TCTTGT---CTCATCCCA-----CCCCTCTCCTCGTTTCGATTCACTATGTTGCAAAATAAGAGGCTCTTGTGTGATATATGCATGAAATCATCAATCATCCCAACGAGT------ACAACATCCTTCACATCCCAACACACTCTGTGTGT--ATATTCCACTAATTTCCAAAACATGTTAGCTC--CTCCTTCAGATTTGTCTCTCTCATT-------------------TCAT-----------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4352959 197 +  4500979 AAACGTTTCAAATCTCTTGT---CTCATCCC------------------------------ATGTTGCAAAATAAGAGGCTC-TGCGAGATATATGCATGAAATCATCAATCATCCCAACGAGTAACGCAACAACACACTAGCCATACTAAAA---------TGT--GGCATCCACTAATTTC--AAACATGTAAG-----CTCCATGAGATTTgcccttttcttt--------ctttcaaccAATCATATTTTA-----TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    291891 206 - 33334924 AAACGTTTCAAATCTCTTGT---CTGATCCC------------------------------ATGTTGCAAAATAAGAGGCTC-AGCGTGATATATGCATGAAATGATCAATCATCCCAACGAGTATCGCAACAACACACTCGCAACACTAAAA---------TGT--GTCTTCCACTAATTTC--TAACATGTAACCTC--TCCCATCAGATTtatcctcttcttc--gtctcttCTCTAACGTATCATTTCGTA-----TT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2854716 198 -  4147112 AAACGTTTCAAATCTCTTGT---CTCATCCCA-----GGG---------------------ATGTAGCAAAATAAGAGGCTC-TGCTTGATATATGCATGAAATCATCAATCATCCCTACGAGT------ACAACACACTGGCAACACTAAAA---------TGTG-GTCTTCCACTAATTTC--CAACATGT-----------CTTATGGTTTGTTGTCCTCTCCTGGcttctctgttttcaaatcAGATTTTA-----TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   426174 198 +   435062 Aaacgtttcaatttttctct---ctCATCCCAAAAGGAAG---------------------ATTCTGCAAAATGA-AGGGTC-TACGTGATATATGCATGAAATCATCAATCATCCCAAGGAGT------AGCACAC-CCAGAAACACTAGAA---------TGTGCGTATTCAGCTAATTTC--TAGT------------AGCCCCCAGATACCTCCTATTTCCA--------ACTTACACAAATCtttttttGGCCGTTT
i caeJap4.Scaffold18190 I 100 I 97

a score=-14175.000000
s ce10.chrX              2099295 37 + 17718866 CCGATCGAAA--TACTATCGTTTCTTC---------------------GCTATTCCTA-----------------GT
s cb4.chrX              13578491 64 - 21540570 TC--CCCGTA--TGCCACCATATCCTTCCGATTCAGTAGACGGACCTTGCAAGGTTTACAATCATG---------CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4353156 61 +  4500979 TC--TCCGCA--TG-------GACCTTTTAGATTGGCGAAAGG-----GTAAGGTTTACAATCatgattttatgttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    292097 55 - 33334924 CCGACTCGTACCTTTCAtcatgttttt---------------------tctcgattcaaACCAAAGCCATCGTGT-T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2854914 48 -  4147112 ----CTCGT---TTTTATTATGTCTTA---------------------G-TGGGTTTAAGGCCATGTCATTGTGCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   426372 97 +   435062 I

a score=98967.000000
s ce10.chrX              2099332 550 + 17718866  
s cb4.chrX              13578555 534 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4353217 576 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    292152 582 - 33334924  
i caeSp111.Scaffold629  C 0 I 452
s caePb3.Scfld02_0       2854962 591 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   426469 662 +   435062  
i caeJap4.Scaffold18190 I 97 C 0

a score=-618.000000
s ce10.chrX              2099882 3 + 17718866 GTT-
s caeRem4.Crem_Contig0   4353793 2 +  4500979 -ct-
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18190   427131 3 +   435062 -ttt
i caeJap4.Scaffold18190 C 0 I 287
e caePb3.Scfld02_0       2855553 0 -  4147112 C
e cb4.chrX              13579089 0 - 21540570 C
e caeSp111.Scaffold629    292734 452 - 33334924 I

a score=-61903.000000
s ce10.chrX              2099885 535 + 17718866  
s cb4.chrX              13579089 331 - 21540570  
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   4353795 300 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0       2855553 324 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427134 287 +   435062 I
e caeSp111.Scaffold629    292734 452 - 33334924 I

a score=0.000000
s ce10.chrX              2100420 21 + 17718866 AATATAACCAGTTGCCGAATT
e caePb3.Scfld02_0       2855877  0 -  4147112 C
e caeJap4.Scaffold18190   427134 287 +   435062 I
e cb4.chrX              13579420 17 - 21540570 I
e caeSp111.Scaffold629    292734 452 - 33334924 I
e caeRem4.Crem_Contig0   4354095 10 +  4500979 I

a score=-37611.000000
s ce10.chrX              2100441 288 + 17718866 TG-CGGAAAAATCGAATTCC-TGTCTATAATTCTGTATATACACTGTAATATATATTTTTGATTT-CTGAAAAATCATACACCTATTTACATTTTCGACCTCTAAGTTGAACCTTTACGTAAAAAAAACCAATCGCGTTTATTCCAAAATAATAAAACTTCCCTTATACAACGGCAATAATTGGATTGATCAGAAAATATTATTTTCGGTCTTATATCCTGTAATGGCTAACTTTTA--TTAGT--TCCAAAAT---CGAACATATAAAACTAAAAACTGCACTATGTTATTCAATTC
s cb4.chrX              13579437 224 - 21540570 tatggaagatatcaaaagtg-tgtcaacta-----------------ataaaatgttcatgatgt-tatgataatca---atttatcaa-----ttga----------caactgaAATCAATGAAA------------TCAATTGAAATCGAGACATGTCCCATTTTAATATCGCTTTCATTG--CCAATTCAGACCGAGTTTACCTGTACTGCTGTTCTCTACT--TCACCTCTTGCtccactttttaaaaat---cgagactcaaaaac------------------attcaaaac
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   4354105 138 +  4500979 -------AAAATCAATCTTG-TATGAA---------------------------GTTCAGCACGTATTCAATAGGCA---ACATATT---------------------TAATCTACATGTATAAAC------------TTA------------------TCCATTTT-------CTTGCA--------------------CTTATCCGT-------TTCTTCAAT--CAGATTCACG-----------AGAAATTCCCGTTATTCCAAA-----------------------CAAAG-
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0       2855877 158 -  4147112 ---CGTATAAATCAAAACTGATATCAATCA----------------TGTCACACTTTTATGG-GT-TTTAAT---------CTTACA---------------------TAACCTTACTGCCAGACA------------TTA--------------TAGCTCTACTAT-------TCCGGACTT--TTGGTCAAAACCAGTACTACTAGA---GAGGtcttttact-------ttttg--acaGTAGTCGGAAAC---TG---------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427134 287 +   435062 I
e caeSp111.Scaffold629    292734 452 - 33334924 I

a score=35044.000000
s ce10.chrX              2100729 63 + 17718866 CCTGCTACGTG------AAATCAAAGTCGATCATCGTCACTTTG---AACTCAACAACAAAATAC-------AGCGGCA
s cb4.chrX              13579661 79 - 21540570 ccTTGTACCTAAAAAAGAAATCCAAGTCGATCATCGTCACTTTGACGAACTCAACAACAAAATACAGAGAGGAGCGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4354243 65 +  4500979 -CTTGTACCTA------AAATCCAAGTCGATCATCGTCACTTTGACGAACTCAACAACAAAATAC-------TGCGGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    293186 66 - 33334924 CCTTATACGGA------AATTCTGAGTTGATCATCGTCACTCTGACGAACTTCACAACAAAATAC-------AGCCGCA
i caeSp111.Scaffold629  I 452 C 0
s caePb3.Scfld02_0       2856035 66 -  4147112 GCTCTCACCTA------GATTTCAAGTTGCCGATCGTCACTTTGACAAACTCAACAACAAAATAC-------AACGGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427134 287 +   435062 I

a score=115630.000000
s ce10.chrX              2100792 163 + 17718866 AATGAGTGAAGGCATTAGCAAATCTAATTCTGATGCC-C-GGGGTTCTTCTTCT--GCGTTTCATTTCT----TCCGCA-GCGTCTTCTTCC-------CTTTTTTTACACTAC---CAGA-TTTGCTTTTCC--TCTTCCGGGCACTAAACAACACTCTT-----------TC---AACTAATCGTTCATATTT--TCAT-
s cb4.chrX              13579740 191 - 21540570 AATGAGTGGAGGCATTAGCAAATCTAATTCTGATGCCAC-GGAgttcttcttct--gcgtttcattttttgccgtttct-tcttctttttctatagttgccttttttacactac---caaattttgcttttccctctttcCGGACTCTAAACAACACACTTTTACCCTCCTTTC---AACTAATCGTTCATATTTCCCGAG-
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   4354308 176 +  4500979 AATGAGTGGAGGCATTAGTAAATCTAATTCTGATGCC-C-GGAGttcttcttct--gcgtttcattttt--ccttcgct-tcttcttcttcc-------ccttttttacactac---caga-tttgcttttcc--tcttccGGACACTAAACAACACACTTTTACCCTCTTCTC---AACTAATCGTTCATATTT--CGAA-
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629    293252 174 - 33334924 AATGAGTGAAGGCATTAGTAAATCTAATTCTGATGCC-CGGGAG---TTCTTCT--gcgtttcattttt----ttgcccagcgtcttcttc---------tttttttacacTAC---CAGA-TTTGCTTTTCC--TCTTCCGGACACTAAACAACACACTTTTACTCTCTCCTCTCGAACTAATCGTTCATATTT--CGGT-
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0       2856101 175 -  4147112 AATGAGTGAAGGCATTAGTAAATCTAATTCTGATGTC-C-GGAG---TTCTTCt--gcgtttcattttt--tcttgtcc-gcgccgtcttct--------tttttttacactACCAACAGA-TTTGCTTTTCC--TCTTCCGGATACTAAACAACACACTTTTACTCTCTTCTC---AACTAATCGTTCATATTT--TGAT-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18190   427421 142 +   435062 agtAAAGAAAGGAATTACTAAAACTAATTCTGATGGC-T-GGAG---TTCTTCTAAACGTTTCATtgtt---------t-gcttctttttct-----ctccatttttACACCAC--------TTGTCGTT-----CTTTTTGGATACTAAACAACA-------------TCCTC------------TTCACATTT--CCGAT
i caeJap4.Scaffold18190 I 287 C 0

a score=-3276.000000
s ce10.chrX              2100955 8 + 17718866 --ACTTTCTT
s cb4.chrX              13579949 6 - 21540570 --GCTTCG--
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   4354497 6 +  4500979 --AACCCC--
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0       2856279 5 -  4147112 --GGTTT---
i caePb3.Scfld02_0      I 3 I 6
s caeJap4.Scaffold18190   427563 8 +   435062 CCAATCCG--
i caeJap4.Scaffold18190 C 0 C 0
e caeSp111.Scaffold629    293426 13 - 33334924 I

a score=235003.000000
s ce10.chrX              2100963 428 + 17718866  
s cb4.chrX              13579955 476 - 21540570  
i cb4.chrX              C 0 I 67
s caeRem4.Crem_Contig0   4354503 385 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    293439 401 - 33334924  
i caeSp111.Scaffold629  I 13 C 0
s caePb3.Scfld02_0       2856290 393 -  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18190   427571 350 +   435062  
i caeJap4.Scaffold18190 C 0 C 0

a score=100.000000
s ce10.chrX              2101391 1 + 17718866 G
s caeJap4.Scaffold18190   427921 1 +   435062 G
i caeJap4.Scaffold18190 C 0 I 1170
e caePb3.Scfld02_0       2856683 0 -  4147112 C
e cb4.chrX              13580431 67 - 21540570 I
e caeSp111.Scaffold629    293840 0 - 33334924 C
e caeRem4.Crem_Contig0   4354888 0 +  4500979 C

a score=-564.000000
s ce10.chrX              2101392 23 + 17718866 GAGCAGGTTGCGTCTCCAAGTCT
s caeRem4.Crem_Contig0   4354888 11 +  4500979 ------------TTTCCAGGGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    293840 10 - 33334924 -------------ATCCAAACCT
i caeSp111.Scaffold629  C 0 I 45
s caePb3.Scfld02_0       2856683 10 -  4147112 -------------TGGTAAACCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e cb4.chrX              13580431 67 - 21540570 I

a score=-128.000000
s ce10.chrX              2101415 3 + 17718866 CCA
s caePb3.Scfld02_0       2856693 3 -  4147112 CAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e cb4.chrX              13580431 67 - 21540570 I
e caeSp111.Scaffold629    293850 45 - 33334924 I
e caeRem4.Crem_Contig0   4354899 0 +  4500979 C

a score=-12188.000000
s ce10.chrX              2101418 71 + 17718866 ATATGATTTTTGTTGAGATGCTTGTTTCT------------AGGAATACTTCACCGTTGAGTATTTCTAGAAGTTTTGACGGA-----------------
s cb4.chrX              13580498 68 - 21540570 --ataa----------------ggttact------------gtagacaatACA--GTTTGCTATTTGTAGAACTAACTTCCGCTTAATTTCTAGAATGAA
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   4354899 15 +  4500979 -------------------------TTCT------------CTGCACAACAC------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2856696 36 -  4147112 CCATCA----------------TGCTTCCTaccatcaaaaactgaacattcc------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e caeSp111.Scaffold629    293850 45 - 33334924 I

a score=-70465.000000
s ce10.chrX              2101489 245 + 17718866 TTTTGACGTTTGAATTTTT------------------------------------------GAAAAACTCATCGTATTATAGTT--------------------------AAACTTTAATATTAGTTTTCAATCATTTTAGTGCAAAACTACTTCATACTGTTCGCCACTAT-----------------------------------AATGTTAATTCTCT---AAAATATAGATATGAAACCCCAAG-GTCTACCTAAAAAGGCGAACTATGgcttgtgggaaaatgattaaaaatcattttttttttggttctgaa------attaccaaatatcataataacactttttttttaa
s cb4.chrX              13580566 311 - 21540570 -----------TATTGTTTTGGagtatacagtaccggtcgcTCGGCAAGATTTCGATAACGGAAAATTTTGTAGT----CTGTTAAACAGAACTAAATCAAGAAGTTtgcaaattcaga----atttttgaaaccttctagtttttca---------gctgcttGCCGATTTGTTGAAAACGCTTGTGTGTTTTCACAATTCGGTACAAAAACGATACTaaaaaaaGGTgtccttcaaaaatcttcag---atagctgaaaa-----acta-----------ggaattttcaaaaacttctgtgATTGTAAAATTGTCAATCTTGTAAGGCTATTTCATACcctccgattttttcgaa
i cb4.chrX              C 0 I 159
s caeRem4.Crem_Contig0   4354914 170 +  4500979 -------------TTGTCT------------------------------------------GACAATCCAGCAAt----gcgtt-------------ttcagaa------aaatccgaA----GGTCTAGTATTATTCACTCTCATAG---------ATTGTTTGCCCA--------------------------------------AGAAACTATACTGA------------TCATAAAGTCTTCAGTTTAGATCTGAAga---------------------tgattactgtaggatGCTGTCA----AGAATTGTA------GTAAGACACTGTCATACT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    293895 111 - 33334924 ---------------tttt------------------------------------------ggaatttgggtTGT-----CATT--------------------------AAATTCA--------ACTTCAATTAACCCTGGTTTT-------------------------------------------------------------AGATCCTACTCTCA--------------ATGAGACACTT------TATCTA-------------------------AActttttacaaattttt-caa----cgttttgtt----------------------------------------
i caeSp111.Scaffold629  I 45 C 0
s caePb3.Scfld02_0       2856732 105 -  4147112 -----------------tt------------------------------------------caaaaaaacattgg-----ttTT--------------------------GAAGCTA--------TCTC--ATTATCGTCAGTTTA-------------------------------------------------------------AAAGCTGATTATGT--------------ATGATACCCGTAG---AAGACCA-------------------------GCGTTTTTGTCAGTCCG----------GATCTGTT----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I

a score=-13754.000000
s ce10.chrX              2101734 114 + 17718866 ttctgaaaattttttatttcaggtcata----aagcgcttgaaatctcagttttcattaatttttggaagccgtcgatataaaaaTGTATCCTTCCAGTTTCGGTTTCTCAAAAATGG-------
s caeRem4.Crem_Contig0   4355084  86 +  4500979 ATATATAAACCATCTACTCCA---CCCGTCTTAAATATTTCTAG---------------------AGCTGGTGCCGATAGCAAAAT------------TCTTGTATCCTTATGATTAAATGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    294006  39 - 33334924 ------------tttagttcA---ACCA----CAACCCTAAAAA-----------------------------------------------------------------TGCAAGTGAAGATT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2856837  64 -  4147112 ----AGAAATTGTACATTTTA---CACA----GAAAGTTAGGAA---------------------AACATCTATCGATA-----------------------------CTGTAGTTGAAACTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e cb4.chrX              13580877 159 - 21540570 I

a score=-43415.000000
s ce10.chrX              2101848 689 + 17718866  
s cb4.chrX              13581036 837 - 21540570  
i cb4.chrX              I 159 C 0
s caeRem4.Crem_Contig0   4355170 645 +  4500979  
i caeRem4.Crem_Contig0  C 0 I 217
s caeSp111.Scaffold629    294045 545 - 33334924  
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_0       2856901 621 -  4147112  
i caePb3.Scfld02_0      C 0 I 209
e caeJap4.Scaffold18190   427922 1170 +   435062 I

a score=0.000000
s ce10.chrX              2102537 12 + 17718866 TGGGTCTGTTCT
e caePb3.Scfld02_0       2857522 209 -  4147112 I
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e cb4.chrX              13581873  0 - 21540570 C
e caeSp111.Scaffold629    294590 12 - 33334924 I
e caeRem4.Crem_Contig0   4355815 217 +  4500979 I

a score=-2247.000000
s ce10.chrX              2102549 62 + 17718866 ------------TCCTTTTTTTTTTGCGCGCGCAGCCATTTC---TTTCCTTGGTTTTAAATGCATTGATG---CAACTG
s cb4.chrX              13581873 49 - 21540570 ------------------TTT------------TATCGATTCGAGTTTCTTT-TGTTGAAATGGACATTTTGAGGAAGTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    294602 77 - 33334924 AGATTctaaaaaccactttttgaacGCCTACGCTACTGGTTGgtatttatttgttttgaaacgCCCTCTTT---TAACTG
i caeSp111.Scaffold629  I 12 I 111
e caePb3.Scfld02_0       2857522 209 -  4147112 I
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e caeRem4.Crem_Contig0   4355815 217 +  4500979 I

a score=-4436.000000
s ce10.chrX              2102611 844 + 17718866  
s cb4.chrX              13581922 706 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2857522 209 -  4147112 I
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e caeSp111.Scaffold629    294679 111 - 33334924 I
e caeRem4.Crem_Contig0   4355815 217 +  4500979 I

a score=273.000000
s ce10.chrX              2103455 1 + 17718866 A
s caeRem4.Crem_Contig0   4356032 1 +  4500979 A
i caeRem4.Crem_Contig0  I 217 C 0
s caeSp111.Scaffold629    294790 1 - 33334924 A
i caeSp111.Scaffold629  I 111 C 0
e caePb3.Scfld02_0       2857522 209 -  4147112 I
e caeJap4.Scaffold18190   427922 1170 +   435062 I
e cb4.chrX              13582628 0 - 21540570 C

a score=18496.000000
s ce10.chrX              2103456 41 + 17718866 TGACACAATAAACAT--TGTAACCCGTGTTCCTCGTCTGTCGT
s cb4.chrX              13582628 37 - 21540570 --ACTCAACAAACATCATGTAACCTGTGTTCCGC----TAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356033 37 +  4500979 TGACACAATAAACAC--TATAACCTGTGTTCCGC----TTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    294791 37 - 33334924 TGACACAATAAACAC--TATAACCTGTGTTCCGC----CTAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2857731 37 -  4147112 TGACAGAGTAGATAG--TATAACCTGTGTTCCGC----TTTGA
i caePb3.Scfld02_0      I 209 C 0
e caeJap4.Scaffold18190   427922 1170 +   435062 I

a score=224320.000000
s ce10.chrX              2103497 399 + 17718866  
s cb4.chrX              13582665 456 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356070 438 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    294828 433 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2857768 443 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   429092 421 +   435062  
i caeJap4.Scaffold18190 I 1170 I 215

a score=15291.000000
s ce10.chrX              2103896 26 + 17718866 TGTAATTAATTT-TAG------CGTTAGGGAAT
s cb4.chrX              13583121 33 - 21540570 tgtaattaatttttagggGAAACTATAGGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356508 27 +  4500979 CGTAATTAATTTCTAG------CTTTGGGGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295261 27 - 33334924 tgtaattaatttttgg------cTTTGGGGAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2858211 27 -  4147112 TGTAATTAATTTTTGG------CTCCTGGGAAT
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold18190   429513 215 +   435062 I

a score=-5672.000000
s ce10.chrX              2103922 42 + 17718866 TGAGAGTAGATCAGTCTGCTTGCTTATTTTCCAC--------------GTATTAGT-------
s cb4.chrX              13583154 21 - 21540570 ----------TCA------------ACTTtgc----------------gtttcaga----act
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356535 42 +  4500979 ----------ACAC-----------ACTTTCCATCTGTTTTTGAGTCTGTTTCAGCTTTTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295288 29 - 33334924 ----------ACACTTGA-------ACTTTCTGTCTCT----------GTTTCAAG-------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       2858238 14 -  4147112 I
e caeJap4.Scaffold18190   429513 215 +   435062 I

a score=-2994.000000
s ce10.chrX              2103964 141 + 17718866 TTTATGTCAGAATAAAGTAGCTAATCTGAAATAGGTAATCATTTACAATATAGTCACCGTTCGA---------------------TGTCATCAACTTT----TGATTTCATATGTATAAATCCGATACGTCTTG-TTTTTATCGAGATTAAC---------------TGCAGGCTCTCCATC
s cb4.chrX              13583175  88 - 21540570 -----------------------------------------ttcatgTCGCTTTCATCATAATA-----T--AACATTTGATA--TGTCACAGG--------TGATATC------------C------GCTCTT-TTTTAATCGGGGTTAGC---------------TCT--CTCTTTCATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356577 116 +  4500979 -----------------------------------------ATCATATCAGTTTCATCATCGTA-----TTGAATATCAAGCAG-TGTCACAAGTTCCGACATGATTTC------------CGGA---GCCGTT-TTTTAATCGGGATTAGCGTCGTTGCtctcgctttt--ttttttcat-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295317 116 - 33334924 ------TC-----------------------TGTGTCGTAGTTGATATCAATTTCATCCCTCCACTTACTGAAGTATTACGTATGTGTCACAAGT-----CATGATTTC------------CGGA---GCTATTCTTTTAATCTGGATTagc---------------ttc--tctttttatc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2858252 128 -  4147112 TTAATATCAGATTTGAG--------------TATGTTTCAGCTTATATTAACATTCACACTCTA-------------TCCATAGCCGTCACAAGCTTTGATATGATTTC------------CGGA---GCCATT-TTTTAATCGGGATTAGCatcgtt---------ttc--tctttctatc
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold18190   429513 215 +   435062 I

a score=136724.000000
s ce10.chrX              2104105 196 + 17718866 GGAAACGCCAT--------------AGGACTGCACTGCATGATATGTGCAATTTTGATGGATTTTCTGCTCATAACCATTCCGAATAGCCATTCAG-CCTTTCTCCTAACTTGTCTCGCTTCACCGGTTTTCGACTAAAGCAACAAGTAAT--TTCTCAAAGGCAACTTGTCTTTTCTTTTCACCA---TCCATTC-TA----TTTTATTTTCCAATGTTC
s cb4.chrX              13583263 194 - 21540570 ACATTCAGAGT----tggtgaaaaaaagagaggagagGATGATATGTGCAATTTTTATGGATTTCC--CTCATAACCATTCCGAATAGCCATTCAGCCTTTTCTCTTAACTTGTCTCGCTTCACCGGTTTTCAACTAAAGCAAC---TCGT-ATTCTCAAAAGCAACttgtcttttcttttctcc----tcaTCTC-TT-----------CTAGGTTAGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4356693 200 +  4500979 ataacaaaaataatatggtgaaaaaaagaagatactGGATGATATGTGcaattttgatggattttc--cTCATAACCATTCCGAATAGCCATTCAGCCTTTTCTCTTAACTTGTCTCGCTTCACCGGGTTTCTACTAAAGCaac---tcat--ttctcaaaagcaacttgtcttttctcttttcct---tcgtTTCGTT-----------GTACAATGTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295433 206 - 33334924 tgaCAGAGAGc----agcgaagaaaaagaggatatTGCATGATATGTGCAATTTTGATGGATTTTC--CTCATAACCATTCCGAATAGCCATTCAG-CTTTTCTCTTAACTTGTTGCGCTTCACCGGTTTTCTACTAAAGCAAC---TCAC--TTCTCAAAAGCAActtgtcttttctttttcatca--tcttctc-tttAGGTTTTGTCGTACAATGTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2858380 205 -  4147112 tcaaaaagagt----atgctggaaaaaaaggatattGCATGATATGTGcaattttgatggattttt--ctCATAACCATTCGGAATAGCCATTCAGTCTTTTCTCTTAACTTGTCTCGCTTCACCGGTTTTCTACTAAAGCAAC---TCAC--TTCTCAAAAGCAACTTGTCTTTTCTCTTCCCTCA--TCTTTTC-CT--AGTTTAGCAGTACAATGTTC
i caePb3.Scfld02_0      C 0 I 412
s caeJap4.Scaffold18190   429728 192 +   435062 --gaaaaaaat---------atagaaaaaggGTA--GGATGATATGTGCAAATTTGATGGATTG----CTCATATCCATTCGGAATAGCCATTCAG------CTTCTTACTTGTCTCGCTTCACCGGTTTTCTACTAAAGCGAC---TCACTCTTCCCAAAAGCAACTTTTCTTTCATTCCCGGCCGCTTCCTCCC-TT--TTTCTACGCACACACTGTTC
i caeJap4.Scaffold18190 I 215 C 0

a score=546.000000
s ce10.chrX              2104301 1 + 17718866 T
s caeRem4.Crem_Contig0   4356893 1 +  4500979 T
i caeRem4.Crem_Contig0  C 0 I 294
s caeSp111.Scaffold629    295639 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 155
s caeJap4.Scaffold18190   429920 1 +   435062 T
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2858585 412 -  4147112 I
e cb4.chrX              13583457 0 - 21540570 C

a score=-570.000000
s ce10.chrX              2104302 13 + 17718866 CCGGTGTAAATGA
s cb4.chrX              13583457 11 - 21540570 -CGGGATGTAC-A
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18190   429921 13 +   435062 CTTGCACAAAAGA
i caeJap4.Scaffold18190 C 0 I 154
e caePb3.Scfld02_0       2858585 412 -  4147112 I
e caeSp111.Scaffold629    295640 155 - 33334924 I
e caeRem4.Crem_Contig0   4356894 294 +  4500979 I

a score=-6813.000000
s ce10.chrX              2104315 793 + 17718866  
s cb4.chrX              13583468 483 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2858585 412 -  4147112 I
e caeJap4.Scaffold18190   429934 154 +   435062 I
e caeSp111.Scaffold629    295640 155 - 33334924 I
e caeRem4.Crem_Contig0   4356894 294 +  4500979 I

a score=311.000000
s ce10.chrX              2105108 2 + 17718866 GT
s cb4.chrX              13583951 2 - 21540570 at
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629    295795 2 - 33334924 gt
i caeSp111.Scaffold629  I 155 C 0
e caePb3.Scfld02_0       2858585 412 -  4147112 I
e caeJap4.Scaffold18190   429934 154 +   435062 I
e caeRem4.Crem_Contig0   4356894 294 +  4500979 I

a score=-2953.000000
s ce10.chrX              2105110 22 + 17718866 TTCCCTCTAAT----ATCCGTATGCC---
s cb4.chrX              13583953 11 - 21540570 ---------------ttccacA---CATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4357188 25 +  4500979 ttctATTTAAA----CTTCATATTCCTTC
i caeRem4.Crem_Contig0  I 294 C 0
s caeSp111.Scaffold629    295797 22 - 33334924 tttcatttaaaaattctctatt-------
i caeSp111.Scaffold629  C 0 I 1
e caePb3.Scfld02_0       2858585 412 -  4147112 I
e caeJap4.Scaffold18190   429934 154 +   435062 I

a score=3251.000000
s ce10.chrX              2105132 8 + 17718866 TCTCTCCA
s cb4.chrX              13583964 7 - 21540570 TTTAT-CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4357213 7 +  4500979 TTtct-ca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295820 7 - 33334924 tttct-ca
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       2858997 7 -  4147112 tctct-ca
i caePb3.Scfld02_0      I 412 C 0
e caeJap4.Scaffold18190   429934 154 +   435062 I

a score=236098.000000
s ce10.chrX              2105140 630 + 17718866  
s cb4.chrX              13583971 647 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4357220 633 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629    295827 612 - 33334924  
i caeSp111.Scaffold629  C 0 I 347
s caePb3.Scfld02_0       2859004 602 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   430088 580 +   435062  
i caeJap4.Scaffold18190 I 154 C 0

a score=1259.000000
s ce10.chrX              2105770 3 + 17718866 GAG
s cb4.chrX              13584618 3 - 21540570 ATG
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   4357853 3 +  4500979 AAG
i caeRem4.Crem_Contig0  C 0 I 352
s caePb3.Scfld02_0       2859606 3 -  4147112 GAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   430668 3 +   435062 GAG
i caeJap4.Scaffold18190 C 0 C 0
e caeSp111.Scaffold629    296439 347 - 33334924 I

a score=-55679.000000
s ce10.chrX              2105773 373 + 17718866  
s cb4.chrX              13584628 371 - 21540570  
i cb4.chrX              I 7 C 0
s caePb3.Scfld02_0       2859609 410 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   430671 431 +   435062  
i caeJap4.Scaffold18190 C 0 I 70
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-7438.000000
s ce10.chrX              2106146 109 + 17718866 GAAG-CAAAATT--------TCCGGCCGCTGC--------------------GAAA----------CGG------------ACAAAAATGC--AATCTTTAACAAAATACTAAAAACTTACCGTTTTCTCCGAATTCGTACA-------------------------TAAACCACGCAAATTTCGGT
s cb4.chrX              13584999 177 - 21540570 TAAA-CCAAATT---CAataccgggccgggccgggcttttttccaattttcggaaGTCCGGCCTgacgggcccgtcatttcataagtatggaaaatttcaaaaaacacataaggactttcgagttttttatatctttattTGTTGATTAAACAggcaaacaatccaaaaaaaaaaacaaa------a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2860019 115 -  4147112 gaaattcaaatttcgcggtaactggcgggggccggt----------------gaaattcgtCAT--CCGGGCCGGCCGATCACAAGTATGA------TATAATAGTGCATTGAAAGGTTCTAGTT------------------------------------------GGAACGTGACAAA------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   431102  70 +   435062 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-1601.000000
s ce10.chrX              2106255 38 + 17718866 AGTTGTGAAAAAATTACTTGTGATATATACCTAGCCTA
s cb4.chrX              13585176 38 - 21540570 aatgggggaaaaatattataggcttaaaatttggctca
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2860134 38 -  4147112 AACCTGAGAGACTTTGCATGGAACAAATACTCAGGCTG
i caePb3.Scfld02_0      C 0 I 67
s caeJap4.Scaffold18190   431172 34 +   435062 aattttctaaaaacttcAGATAAAATCTACCTCA----
i caeJap4.Scaffold18190 I 70 C 0
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-1003.000000
s ce10.chrX              2106293 17 + 17718866 AAAAT----ATTTTCTAATAC-----
s cb4.chrX              13585214 21 - 21540570 aaaacccAGAATTTTTAATAC-----
i cb4.chrX              C 0 I 130
s caeJap4.Scaffold18190   431206 22 +   435062 --AGctc--attttggaaaaaaataa
i caeJap4.Scaffold18190 C 0 C 0
e caePb3.Scfld02_0       2860172 67 -  4147112 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=436.000000
s ce10.chrX              2106310 44 + 17718866 GTTTTCCATTCATTTTTTTTTG--------------------AACATTAGGTACTTGTGTATTA
s caeJap4.Scaffold18190   431228 64 +   435062 tttttcaatgctttttttcccggaaacatgaaaaaacgcctcaaaatttgaaattcgtGTAAAA
i caeJap4.Scaffold18190 C 0 I 131
e caePb3.Scfld02_0       2860172 67 -  4147112 I
e cb4.chrX              13585235 130 - 21540570 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=0.000000
s ce10.chrX              2106354 17 + 17718866 GTTGTAAAACTCAacgt
e caePb3.Scfld02_0       2860172 67 -  4147112 I
e caeJap4.Scaffold18190   431292 131 +   435062 I
e cb4.chrX              13585235 130 - 21540570 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=18.000000
s ce10.chrX              2106371 38 + 17718866 aaataaccatttaaataatatattcattttcaggcatg
s caePb3.Scfld02_0       2860239 25 -  4147112 AGATAACCAGAAAA-------------CTTGATGAATg
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold18190   431292 131 +   435062 I
e cb4.chrX              13585235 130 - 21540570 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-2443.000000
s ce10.chrX              2106409 53 + 17718866 ---aaaatt-----atttttcttatgcctaaaatacaaaaaaatcacgttATATAATATTT
s cb4.chrX              13585365 54 - 21540570 ---aaaattatctcaatttt----tgtgaaagatatgacaAATTGCcatttgataaaatgt
i cb4.chrX              I 130 C 0
s caePb3.Scfld02_0       2860264 30 -  4147112 agaaaagtt-----gattt-------tgaacgAT--------------TCTG-----GTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   431292 131 +   435062 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-23066.000000
s ce10.chrX              2106462 145 + 17718866 -----------------------TTTTGAAAAAATTGAATGAACATA-----T---------------CGAGCCGAAAATGATAATTTA-ATCAAAC-----GTAACATTTATTTGCATTTTTAGGCTT------TGAAAAA--------------------TAATTATCCTGAGCCTTATATGGA------------CAAAAAG-GGTCACGGAAAATTTTCAAA--------ATTTTAT
s cb4.chrX              13585419 197 - 21540570 -----------------------ttctaataATATTGCCAAAatgttattagt---------------tgacaagttttcaatatcttttataaagtcagagataattgacctcaaaatGCAAGTATTC------AGTAGCACTGTATCAAAGGTTTCTCGATAGTCAGTTTccgtcatttttgaaaaactgattaCCCAAATAATTATACTGAGACAATTTCAAATGAttatgattttaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2860294 149 -  4147112 -----------------------TTTTAATAGTTTTcacttaacatt-ttttt---------------tgatgagaatacATCAGTCCatatgaaact----gtaatttggat-aaaataaatgaaatt------tgaaaca---------------------aattactTT-CATCCTatcacaaaaact-------caaata--cgGACCGGGAAACATCC-----------ATTTTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   431423 194 +   435062 TTTTGATTTCGCGGCCACCAACCGTCTGAAAATGTCCGCCAAAATCC-TTTCTCGCGATTCTCGGCCACGATGGTCATTTGGGTGTTTTTAATGAATTgtc-gccgtttttttttttttgcacgcgGTTTTACGGTGCAAAA--------------------TATCTAAACTTGAGCGATAGCGAAAGACT-------Acaatac----------atatttttaaa--------aactcat
i caeJap4.Scaffold18190 I 131 I 50
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-1422.000000
s ce10.chrX              2106607 19 + 17718866 AATTTTGGG---CCAGGTATAG
s cb4.chrX              13585616 22 - 21540570 aatttcaaaaaatcaaatatag
i cb4.chrX              C 0 I 45
s caePb3.Scfld02_0       2860443  9 -  4147112 GACTGAACG-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   431617 50 +   435062 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-197.000000
s ce10.chrX              2106626 29 + 17718866 TACCAAGTTAAAGAAAACATTGTCTGGAA
s caePb3.Scfld02_0       2860452 22 -  4147112 GAACAAAATGAGCAACCCATTG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18190   431617 50 +   435062 I
e cb4.chrX              13585638 45 - 21540570 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=231.000000
s ce10.chrX              2106655 12 + 17718866 TAGTGATCGCAA
s caeJap4.Scaffold18190   431667 12 +   435062 TATTATCCCCAA
i caeJap4.Scaffold18190 I 50 C 0
e caePb3.Scfld02_0       2860474  0 -  4147112 C
e cb4.chrX              13585638 45 - 21540570 I
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-15728.000000
s ce10.chrX              2106667  84 + 17718866 -AAATTAAACCA--TGT-----GAAATTGCCATAACCACACTCGTTTAT--------TGGTT---TATTCC-----AATCACCGGTTG----------------------CAAAACTTTTCAAAGTTCAG---------
s cb4.chrX              13585683  97 - 21540570 --AATTTA------TGTTACACGAAGTTTGAata-------taatttct--------gaatt---tatt-------aaTAACTGTTTCGGTATGACTATCTATacgaaaataaaatttttccgcctttca---------
i cb4.chrX              I 45 I 23
s caePb3.Scfld02_0       2860474 103 -  4147112 -AAATTGAACCAGTTTTTCCACGACACGGAAATT-------TCTTTTCCCTGGCACATAATT---TGTTTCGAGGAAAtacatgtttt------attttc----------tggagttttcttagttatca---------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18190   431679 108 +   435062 AAAAT---ATCT--TATCACATGTAACTATAAGA-------AAATCCCA--------GATTTGGCTACTTT-----TATTGACGTGAC------ATTGATGAGCCCAAAAAATAACTtacaaaaaagcaaagaagccga
i caeJap4.Scaffold18190 C 0 C 0
e caeSp111.Scaffold629    296439 347 - 33334924 I
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=-1622.000000
s ce10.chrX              2106751 10 + 17718866 ----AAATATTC----CC
s cb4.chrX              13585803  8 - 21540570 ----agcttttc------
i cb4.chrX              I 23 C 0
s caeSp111.Scaffold629    296786 10 - 33334924 ----aaatatta----tt
i caeSp111.Scaffold629  I 347 C 0
s caePb3.Scfld02_0       2860581 14 -  4147112 ----aaatattcaactCT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18190   431787 12 +   435062 aatttgattttc------
i caeJap4.Scaffold18190 C 0 C 0
e caeRem4.Crem_Contig0   4357856 352 +  4500979 I

a score=202252.000000
s ce10.chrX              2106761 348 + 17718866 -----CCAAA----------TTTCCAGATGTCGCACCGGCTGCACTCAACAGCACTCCGAAGACCTGATGATGCCACGTTGGCACTGTCCGTTGCAGGTTTGACATTTTCATTCCAT--------TTGTTTCCGTGTTTGCA----------ATTCCATTTCTTTTTCC------AG----TGTTATA--------GCTTTTCAGGAAGAAGATGACAATGATGTGGAAGAGGAGGAGAAGACATCGTTGGGTGGCAAGATGCTCATCATTGTTCCCTGTGTCATATTTGGATCACTCCTTTTCTTATTCTTTTGTGTTTCTGCAATGCAGCGATTTTGTCGGAATGATTATTGA-----------------------TTT------TTGAAAAACGTTGC--------------AAATC-TCAAAATT--------TTCTCTTTCATTTC
s cb4.chrX              13585811 393 - 21540570 -----aaaaa----------attccagatgccGTATCGGATGCACTCAACAACACTCTGAAGATCTGATGATGCCCCGTTGGCACTGTCCATTGCAGGTTTGGCTTTTCATCTCTACCCACATAGTT-CCCTCTCATTTCCTTGCTCCCTTTATTCCAATTCTTCTATCTGACCAAgccaattttatttttcattttctttccagGAAGAAGACGAGAACGAtgtggaagaggaggagaagacgTCGCTGGGAGGAAAAATGCTCATCATTGTCCCTTGCGTCATATTCGGCTCTCTtctgtttttattcttctGCGTGTCGGCAATGCAACGATTCTGTCGAAACGACTATTGATTCGTTTTGAG-----------Ctca------tcaaacatttttga----------aaagaaatt-ttcaaaaa--------ttctaatt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   4358208 366 +  4500979 -----CCTAC----------TTTTTAGATGCCGCATCGGTTGCACTCAACAACATTCAGAAGACCTAATGATGCCACGCTGGCACTGCCCTCTGCAGGTTTGACTTTTCTTCTCCCT--------TT-ATCCCtcatttcct--------------catttctcc----------aaccaatttcattttta----tttcttcaggAAGAAGACGAGAACGAtgtggaagaagaggagaagacgTCGCTCGGAGGAAAAATGCTCATCATTGTCCCTTGCGTCATATTTGGTTCCCTTCTGTTTTTGTTCTTCTGTGTGTCGGCGATGCAACGATTCTGTCGAAACGACTACTAA-TCACTTCGCA-----------CTTC------CTCTACATTTCTAACTGAAGTCTCATGGGAAAA-TGAGTGAA--------TTCTATGA------
i caeRem4.Crem_Contig0  I 352 C 0
s caeSp111.Scaffold629    296796 345 - 33334924 -----ttcaa----------gttttaggTGCCGTATCGGATGCACTCAGCAACATTCTGAAGACTTGATGATGCCACGTTGGCATTGTCCACTGCAGGtttgacattttccatttc----------------ctcattgca-----------ccaccaattcttctttc------aattttttcaat---------tttttctaggaagaagacgaaaacgatgtggaagaagaggagaagggaACGCTTGGAGGAAAAATGCTCATCATTGTCCCTTGCGTCATATTTggttctcttctctttctattcttcTGTGTTTCGGCAATGCAGCGATTCTGTCGAAACGACTActaa--aacttttga-----------tttttctatctgaactattttttt--------------gattcttgagTAAT----------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       2860595 380 -  4147112 -----TTTAATTACACCAATGATTCAGATGTCGTATTGGATGCACTCAACAACATTCCGAAGACTTGATGATGCCTCGCTGGCATTGTCCATTGCAGGTTTGACGttttctccttca--------at-tcttctcatttcaa--------ttttctcattttcttttcc------aacaaattttat---------ttctttcaggAACAAGATGAGAACgatgtggaagaagaagagaagacgtCGCTCGGAGGAAAAATGCTCATCATTGTCCCTTGCGTCATATTTGGttctcttctgtttttgttcttctgtGTCTCGGCAATGCAACGATTCTGTCGAAACGACTactaa--atttctgaa-----------attt------tgaaaaatctcttg--------------GGTTA-TGAGTAATGATCAGACTTCCAATTAATAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18190   431799 346 +   435062 gaaaattcaa----------ctTTTAGATGCCGCACTGGCTGCACACAACAACACTCGGAGGACTTGATGATGCCACGTTGGCACTGTCCATTACaggtttcctttttttcttcttg--------gtCTTTTACCATTTATC----------CCGTCAATTTCCCGTTA------TATGTATTTTA----------TTGGTTTAGGAAGAAGATGAAAACGATGTCGAGGAAGAGGAAAAGACGTCCCTTGGAGGCAAAATGCTCATCATTGTCCCATGCGTCATATTTGGCTCCCTTCTCTTTTTGTTCTTTTGCGTTTCCGCAATGCAACGGTTTTGCAGAAACGACTACTGA--CACTTGGAaacaaactttattttt------ttttgcgtttc-----------------------------------------------------
i caeJap4.Scaffold18190 C 0 N 0

a score=-22967.000000
s ce10.chrX             2107109 51 + 17718866 A------ATAAG----TGATATTTTGATATCTAACTTTTTAAACCACATGTTTCATGTGAT-------------------------------
s cb4.chrX             13586204 81 - 21540570 -------gcACA----TAATCCGTCGGTATTTTTCCCAATGAGATACACCTCAAACATCAATTCCCTGCCTAGAACCTCTACATCATGGCTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358574 80 +  4500979 -------GTAAAAAGCTAATTAAGCAATAGTATACTCACAATCTTACATCCGGA--TTGAAATCCTTTCT---AACTCACACTTTAAGACtt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297141 39 - 33334924 -------ATGCA----TATTC-----------------------------------------TGTACTCTTAATAAGTACAAGCATGTAGT-
i caeSp111.Scaffold629 C 0 I 95
s caePb3.Scfld02_0      2860975 86 -  4147112 AAGTGCAATTCA----CACTCCGGATATAAATCTTTCTTTATAGT-CACCTCTAACCCAACATCAACTCCCACTAACCATATATCTATAct-
i caePb3.Scfld02_0     C 0 I 3

a score=-9743.000000
s ce10.chrX             2107160 44 + 17718866 TCATAAAATTCC----CCCGGCTACATTTT------------------------CTGTCATTGAGTAAAACA-------
s cb4.chrX             13586285 39 - 21540570 CCGCCAA---Tcaaactctctttttttctt------------------------tttttttcctgt-------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358654 58 +  4500979 ataaaaaatctcaaaaacctgTTTCATATTCAATATTC------------AATATAGTTTTCCAGTAAAA---------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2861064 68 -  4147112 -----------ttatttcttttttcttcttttcaactcTAAATCACTTTGAGTACTTTCTTTAATTAGTACGTGAGGCA
i caePb3.Scfld02_0     I 3 I 27
e caeSp111.Scaffold629   297180 95 - 33334924 I

a score=-1693.000000
s ce10.chrX             2107204 17 + 17718866 AAGCATTACC-TATAA------------AA
s cb4.chrX             13586324  7 - 21540570 -----ctaCC------------------AA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358712 26 +  4500979 ----GCTACTCTCTAAGCACATAGCACAAA
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2861132 27 -  4147112 I
e caeSp111.Scaffold629   297180 95 - 33334924 I

a score=-3657.000000
s ce10.chrX             2107221 21 + 17718866 AATTCAAAAATTAG----------------------CTGAAAA-
s cb4.chrX             13586331 25 - 21540570 ---ACCTCAATCAgtactttt---------------tccaaaa-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358738 40 +  4500979 ---TCCTCATTGATTATTCGTCATTTCTAGTCCCCATCGAAAA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297275 21 - 33334924 AATTCTCAAATCA-----------------------CATAAAAT
i caeSp111.Scaffold629 I 95 I 16
e caePb3.Scfld02_0      2861132 27 -  4147112 I

a score=27646.000000
s ce10.chrX             2107242 171 + 17718866 GCATGA-------TGCCCTTTTTC---AAGTGCATCTGCCAAT---------------TTGAA----------------------------------ACATCTCTT-----AAAACAAGTAGACTAACTTTTTTTTT----------CCAAAAAGTTCATTCTGTTATCAAATGTTATTATCGTT--------------------TCAATCTTGTTGCATCAACAAGTTGT-----CCTCTAATTGTAAGTCTACCCCTT--------TACGCTTTTC--------------------
s cb4.chrX             13586356 253 - 21540570 ----ttt------tgcacTTTTAACTAAAGTGCACTTCCCTAT---------------TTTGTCTCTATTATCTTTGGACCCTCAACTCATTAATGTTCATTTCTTGTCGACAAAAAACCAGTATAATTTCTTGAATCGTCTT----CTAGAGAATGCATGTTGTAATGTAATACTATGATCGTCagtctcattttctctttttgtctGTCTTGTTGTATCAACAAGTAGtttctcctttt---------atttttcccc-----tcgatattttttc--tctgagcaatctttttct
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358778 221 +  4500979 -------------TGCACTTTTACC--AAGTGCACCtgtcaat---------------ttcattttctttaccTTTTG-------CCTCATTAATGTTCTTttcttgttaaaaaaaaaccag--taaTTTCTTGATTCATCAG----TTAGAAAGTACATGCTGTAATGTAATACTATTATCGCC--------------------TCTGTCTTGTTGTATCAACAAGTAAT-----CTTCT---------acatttcttcgatttccaATAACTTTTCGACACGAGcagtttcttttc
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297312 210 - 33334924 GCCTAATTGAAAGTGCACTTTTAGT--AGTTCCACCTGCCCAACCTacgattttctcatttgt----------------------tcTAATTTATGATCCCCTcatgtcaaaaaaaacccAG--TAATTTCTCGATTCATCAGTCAGTTAGTAAGTGCATGTTGTAATGTAATACCATTATCGCC--------------------TCTGTCTTGTTGTATCAACAAGTAGT-----CTTCC---------TCATTTCCTT--------ttatgtcttc--------------------
i caeSp111.Scaffold629 I 16 I 25
s caePb3.Scfld02_0      2861159 155 -  4147112 GCCTTAT---------------------------------------------------TTCCT----------------------CTTCATTAATGTTCACCTCATGTCAAAAAA---CCAG--TAATTTCTTGATTCATCAGTC--TTAGAAAGTGCATGTTGTAATGTAATACCATTATCGTT--------------------TCTGTCTTGTTGTATCAACAAGTA-T-----CTTcc---------tcaatcattt--------tccatttttc--------------------
i caePb3.Scfld02_0     I 27 I 38

a score=-1533.000000
s ce10.chrX             2107413 15 + 17718866 ----AATCATTAAAATATG
s cb4.chrX             13586609 14 - 21540570 ttttgc----ttgaCTGT-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4358999  9 +  4500979 t---------ttgaatGT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297547 14 - 33334924 ----GCTCATTTGAATGT-
i caeSp111.Scaffold629 I 25 C 0
e caePb3.Scfld02_0      2861314 38 -  4147112 I

a score=-5091.000000
s ce10.chrX             2107428 222 + 17718866 TTCACAGTTGTGATGTTCCTATGGGTTCCGGTG--------A-TTTCCTCATCTACTTCTTTTTTTTCTTATATTTTCAGTTGAAACAGTATTT---GTTC-AATAAACTTACCCACCTAACATGTTTTTTCTTATCACAAAATGAAACATTTCGTGAGTTATCAGTCATAGACATTTACCCAT--TTGACATAATTCAAGATCGAGGTTGCCGAATTCACATGTGAAAATTTAAGA-------------------------------------------
s cb4.chrX             13586623 221 - 21540570 TCCTCAGTTGTGATCTGTGTATGGGTTCCGGTGATAAATTCATTTATTccttttatgtattttttttcg-----------------taaaattt---agTTCAATAAACGTATCGCCTTA--------TTccttatcagaaaaa--aatgtcgcAAGC--Tgtc--------agattaaaaaaaacgagaagt--tTAATCATCAAGGTT----------------AATAATTCTGA-CAATGATATATAGGAGGAAGTTCAAAGTTGCCTGGCTTATTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4359008 215 +  4500979 TTCCTAGTTGTGATCTTTTTATGGGTTCCGGtgattatttta-ttatttcaataatcttttttttttct-----------------aaatatttctcagat-aataaaca-attttcttaCTTACTATCTCTTcattaacaaaa--aacaataaaaataatgtc--------aGATCCTTCAAA--GAGACGT--TTTAAAATCAAAGTT----------------ATCAGTCTTGAGTAATCAT-----------ATGTCAAA----TCAAGTTGAATG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297561 134 - 33334924 TTCACTGTTGTGATTTATCTATGGGTTCcggtga-------a-ttttttcaatcatttatACCTTTTCC-----------------TTAGCTTT---TTGT-AATAAATTTATTCACATCACTTGGTTTCTTTCAATAAAAGAT----------------------------TGATTTAGTAAA--TATAATT---------------------------------------------------------------------------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2861352 167 -  4147112 TTCACTGTTGTGatttatttatgggttccggtgat------a-cttttttactcgtttatatttttgccgat--------------ttattttC---CTTC-AATAAACTTATCAGAACAATTCCTTTTCtctcatcagaaaaa----------------------------atgtgtctgcaa--taaagtt--ttcaagatCAAGGTTGC-------------GAAAAATCGAGA-------------------------------------------
i caePb3.Scfld02_0     I 38 I 231

a score=-19071.000000
s ce10.chrX             2107650  95 + 17718866 GATTCACATGTGAAAATTAAGAATTAAGAGTTTGATCATTTGATAATGATGACAGTTTTGC--------GACGATACTTTAAAATG--------------------------------------------------------TTAG-----------AGATGAA----------TTCAAA
s cb4.chrX             13586844 170 - 21540570 -----GTCT-----AATCAGCATCttcttttatgaaaattttagaaagcTGACAGTTAGTATAAGACTATAAGAGATTATCTAACCATGCCTTCATTTATACCACCAATGCCGTGATAAAATGACAATCTGTATCtgttctttgagctcaactatctcaatttctgtgagtGATTTCAAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4359223  60 +  4500979 -----ACCT---------------tgctttt----cacttttcaaaag---------------------gaaaatataGTCTAACCA-------------------------------------------------------AGAG-----------caatttc---------tttcaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297695  47 - 33334924 ------------------------------------GGTTTCAAGATGC--------------------GACGATGATttcaaagaa-------------------------------------------------------tgaa-----------aaatgac-----------ccAAA
i caeSp111.Scaffold629 C 0 I 27
e caePb3.Scfld02_0      2861519 231 -  4147112 I

a score=-3538.000000
s ce10.chrX             2107745 39 + 17718866 TTTTTGCA--------------------TGTCACTA-----GTACCAGCAAGT-ACAAGTAGTGG
s cb4.chrX             13587014 65 - 21540570 AATTTGTTAAGTGATACCAGGTTGGTGATATTACTATAAAAGTTcaatcagttgacagatgttTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4359283 31 +  4500979 cttttttt------------gtt------------------gttcccCCA----ACAAAGCCTTG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2861519 231 -  4147112 I
e caeSp111.Scaffold629   297742 27 - 33334924 I

a score=-28430.000000
s ce10.chrX             2107784 202 + 17718866 ---------------------------------------------------------------------------------ACAAAACAAAAAAACAAACATATTACATCATTGTTTACCCACATGATACTATCACAAGATGT-------------------------GCCATTTTTCTAAACGATTTGCATTTGAATGT------AAAAATTGAATTTTATTATGTTTATTTTTGTTGGAAGTATACGTTTTTGAAAATCTCGAAACTTTTTTAGTTTAGTA-GTAGTACTTAC-ACAACTCTTACATTTTGCCT------------
s cb4.chrX             13587079 299 - 21540570 ACATCTCTgctaggaactgagataattgagctgaaaaaatttagtaTGGCGTCCTATTTGAGTATTTATGGTTCCTTGTTGActaa--aaacaaataaaaattcaatgttttt-------caaatcataTGAGTCAAAAGTGCACAAATTAAGTCATAcgggtttttaaaaatacgccaacacattttttatttaatttttttttcgaaaacccaaattt-ttgttttcatctaT----------TATGCTTTTCGACA-------GTTTCCAGAATCCAGT--TTCATAGCAACTCCttaatttcaactttcaatcaaaaattgcaT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4359314 125 +  4500979 ACATCTC-----------------------------------------------------------------------------------ACAAACAGAAACAACACGTCGTT--------------------TCAAAAGTGC----------------------------------------------CACCTTGGTGTATTGACAGAAAC--------------TTTATTCTT----------TACGTTT---------------------GAAGTCA----CTCATGGTAAC-AAGCGACTTGAGGTTTCCCT----AGTTGCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297769 132 - 33334924 ---------------------------------------------------------------------------------ACCAAtcattaaaacaaaaatacaaCTGTGTA-----------------AGCTTGAAAGTAT---------------------------------------------------------------AAAAATCT------------TTAATATTC----------CACGTTTTCTAACATTTCGTCGTTTTGAGACCCCTCTTGTTTGTATTGAC-ACAAACcttattcattcttt------------
i caeSp111.Scaffold629 I 27 C 0
e caePb3.Scfld02_0      2861519 231 -  4147112 I

a score=13174.000000
s ce10.chrX             2107986  851 + 17718866  
s cb4.chrX             13587378 1002 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4359439  860 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629   297901  926 - 33334924  
i caeSp111.Scaffold629 C 0 N 0
s caePb3.Scfld02_0      2861750  840 -  4147112  
i caePb3.Scfld02_0     I 231 C 0

a score=359311.000000
s ce10.chrX             2108837 888 + 17718866  
s cb4.chrX             13588380 983 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4360299 992 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33064234 978 + 33334924  
i caeSp111.Scaffold629 N 0 C 0
s caePb3.Scfld02_0      2862590 982 -  4147112  
i caePb3.Scfld02_0     C 0 I 29

a score=-7288.000000
s ce10.chrX             2109725 27 + 17718866 TTGAAGACatttatattaataaatatc---------------
s cb4.chrX             13589363 37 - 21540570 -Aggcgaaattga----gaaaaaaaccaagtCTCCTAAACAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361291 27 +  4500979 -AG--------------AAAAAATATCACGTTGACAAACTCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065212 16 + 33334924 -------------------aggatttttgattgtt-------
i caeSp111.Scaffold629 C 0 I 8
e caePb3.Scfld02_0      2863572 29 -  4147112 I

a score=155608.000000
s ce10.chrX             2109752 333 + 17718866 aatt--------tataaataataCATTTCAGACACCAAAACATATCCTCCACTTCCCGATATTGTTCTGGACAATGTCCCACACATTCCGTGGGCTTTCGACATGTGTGAGACGATTGGGCTAGTGCTTGCGGTTGTCTGGTTTACTGTGCTCTTTTTCCACAATCAGAGG------TAACTAATAGTATTACAG----TGATAATATTAATAATTATGTCCCATTTTCAGAGTAATTGTGGCTCGGAGAATGTTTTCGCTTCTCGGAACAGTTTTCCTGCTCCGTTGCTTCACCATGCTCATCACGTCTCTCTCGGTACCTGGGATTCATCTTCAATGCGAAGCCAGGGT
s cb4.chrX             13589400 329 - 21540570 AAAGCAAGCAATTATTC-------TTTACAGACACAAAAACCTATCCACCACTTCCGGACATCGTGCTCGACAACGTTCCACACATTCCATGGGCATTCGACATGTGTGAGACGATTGGTCTGGTTCTTGCAATCGTTTGGTTCACGGTGCTCTTCTTCCACAACGAGAGG------T------AACTGTTCAGAATAAGAGTGTCATGGaaaattt---aatgttttcaGAGTGATTATTGCTCGTCGAATGTTCTCGCTTCTGGGAACTGTGTTCCTTTTGCGTTGTTTCACTATGCTGATCACGTCGTTGTCGGTGCCAGGGATTCATTTGCAGTGCGAGGCTAGGGT
i cb4.chrX             C 0 I 760
s caeRem4.Crem_Contig0  4361318 322 +  4500979 AATG--------TTTGG-------TTTACAGATACGAAGACGTACCCACCTCTGCCAGATATTGTTCTCGACAACGTTCCTCACATTCCATGGGCTTTCGATATGTGTGAAACAATTGGATTGGTGCTTGCCGTCGTTTGGTTCACTGTGCTCTTCTTTCACAAAGAGAGG------T------ATAGCTTCGAGAAGTagttcaaataaaaaatct--gaagaattTCAGAGTGATCATTGCCCGGCGAATGTTCTCATTACTCGGCACAGTTTTCCTTCTCCGTTGTTTCACCATGCTCATCACTTCGTTATCTGTCCCTGGTATCCATTTGCAGTGTGAAGCAAGGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065236 320 + 33334924 aaac----------tgaatta---tttttagacaCAAAAACGTATCCGCCACTTCCTGACCTGGTTCTCGACAACGTTCCACACATTCCATGGGCTTTCGATATGTGCGAGACGATCGGATTGGTGTTGGCTGTGGTCTGGTTCACTGTCCTGTTCTTCCACAGAGAGAGGTACCGCTGAGTT-ATCCATTAAAG-----------ATGAATAACCG------TATTTCAGAGTCATCATCGCTCGTCGAATGTTCTCGCTGCTCGGGACAGTGTTCCTTCTGCGTTGCTTCACGATGCTCATCACTTCTTTGTCGGTTCCTGGAATTCATTTGCAATGCGAGGCCAGAGT
i caeSp111.Scaffold629 I 8 C 0
s caePb3.Scfld02_0      2863601 325 -  4147112 AAAC--------TATGAACAA--CCTCTCAGATACCAAGACATACCCACCACTTCCGGATATTGTTCTTGATAATGTTCCACACATCCCATGGGCATTCGATATGTGCGAGACCATTGGTTTGGTGCTTGCTGTGGTTTGGTTCACCGTGCTCTTCTTCCACAGGGAGAGG------TGAGTGAAACCATTCAAG----TGCCGGAATGCAAAACTG------AATTCCAGAGTCATCATTGCCCGTCGAATGTTCTCTCTGCTCGGGACGGTCTTCCTCCTCCGTTGCTTCACAATGCTCATCACTTCCTTGTCTGTTCCGGGTATTCATCTGCAATGCGAGGCTAGAGT
i caePb3.Scfld02_0     I 29 C 0

a score=-1850.000000
s ce10.chrX             2110085 23 + 17718866 ATGAAGCATGAAATCAATGACAT
s caeRem4.Crem_Contig0  4361640 10 +  4500979 ---AAGtaata----------ct
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065556 10 + 33334924 ---AAGTAtct----------tt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2863926 11 -  4147112 ---AAGTTTCTA---------TT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             13589729 760 - 21540570 I

a score=-21979.000000
s ce10.chrX             2110108 40 + 17718866 TTTTTGACTAGTTTCTTGTAGATTAT-----CTAAGA------------------------------------------------------------AATAGTTT
s caeRem4.Crem_Contig0  4361650 93 +  4500979 gtttcaagaaaccTTATGTAAGACG------CCAAGA-TGATTCACTCGTGCCCAAAATAGCAATAGTTGTGATAACTAAGCTAATTTCCGT-----AATAgcct
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065566 87 + 33334924 gttttga-----tttgtaGAAATAA------ATAAGGCTGAGTCACTTTTCC-------AGCACTtttctaaacaaaaaagctAATTGCAACCGGAAATTGGCTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2863937 20 -  4147112 g--------------------------------aagattg-----------------------------------------------------gaaaaatagttt
i caePb3.Scfld02_0     C 0 I 408
s caeJap4.Scaffold4951     5773 37 +   152553 -tttttagCTATTTCCTGAAGAACCGCataaataaaac-------------------------------------------------------------------
i caeJap4.Scaffold4951 N 0 C 0
e cb4.chrX             13589729 760 - 21540570 I

a score=-3237.000000
s ce10.chrX             2110148 26 + 17718866 ---------TGTTTC---------TAAAATCAATT-------TAAAACAAA
s caeRem4.Crem_Contig0  4361743 23 +  4500979 ------------------------tgaaaaaaatt---gtc-tgaatCATT
i caeRem4.Crem_Contig0 C 0 I 14
s caeSp111.Scaffold629 33065653 39 + 33334924 ---------TATTTGTTgctttcttgaaaatgaac---cTCATTAAACACT
i caeSp111.Scaffold629 C 0 I 12
s caeJap4.Scaffold4951     5810 39 +   152553 tgtaaaaaatgtt-----------taaaaaaaaatgaacgc-taaaataaa
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2863957 408 -  4147112 I
e cb4.chrX             13589729 760 - 21540570 I

a score=609.000000
s ce10.chrX             2110174 2 + 17718866 TA
s caeRem4.Crem_Contig0  4361780 2 +  4500979 TA
i caeRem4.Crem_Contig0 I 14 C 0
s caeSp111.Scaffold629 33065704 2 + 33334924 TA
i caeSp111.Scaffold629 I 12 C 0
s caePb3.Scfld02_0      2864365 2 -  4147112 TG
i caePb3.Scfld02_0     I 408 C 0
s caeJap4.Scaffold4951     5849 2 +   152553 CG
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13589729 760 - 21540570 I

a score=165041.000000
s ce10.chrX             2110176 170 + 17718866 AT----TTCCAGCCAAACACTACAATGCAGGAAAAGCTACACAAAGCATTCCACATTTGGAGCAACCTTGGAATGTCACTTCACGGAGTTCGTAGTTGTGGAGACTACATGTTCAGTGGTCACACTACAGTGATCACGATGATTTCTCATTTTATCACAGAATGTAGGTATTTT
s cb4.chrX             13590489 170 - 21540570 AT----TTTCAGCCCAACACCACGATGCAAGAAAAACTGCACAAAGCGTTCCACATCTGGAGCAACCTTGGAATGTCACTGCACGGAGTGAGAAGCTGTGGAGACTACATGTTCAGTGGACACACCACCGTCATCACGATGATCTCTCATTTTATCACCGAATGTGggtttttt
i cb4.chrX             I 760 C 0
s caeRem4.Crem_Contig0  4361782 170 +  4500979 TA----TTTTAGCCCAACACTACAATGCAAGAGAAACTGCACAAAGCATTCCATATCTGGAGTAACCTCGGAATGTCATTGCATGGTGTTCGAAGTTGTGGAGACTACATGTTCAGCGGCCATACCACTGTCATAACTATCATCTCTCACTTCATAACCGAATGTGAGTTATTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065706 171 + 33334924 ATGTTGTTTCAGCCAAACACAACAATGCAGGAGAAACTGCACAAAGCTTTCCATATCTGGAGTAACCTTGGAATGTCGTTGCACGGAGTTCGCAGTTGTGGTGACTACATGTTCAGTGGTCACACTACAGTCATCACAATGATTTCTCACTTCATCACAGAATGTGAGTAT---
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2864367 170 -  4147112 AC----TTTCAGCCAAACACCACAATGCAAGAAAAACTCCACAAAGCTTTCCATATTTGGAGTAACCTTGGAATGTCATTGCACGGAGTTCGCAGCTGTGGAGACTACATGTTCAGTGGACACACCACCGTCATCACCATGATCTCTCATTTCATCACAGAATGTAAGAGCTTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951     5851 169 +   152553 -----ATTTTAGCCGAACACCTCGATGCAAGAAAAACTGAAGCAAGCTTTCCACATCTGGACCAATCTCGGAATGTCGATCCATGGAGTTCGTAGCTGTGGAGACTACATGTTCAGCGGTCACACAACCGTCATCACCATGATTTCACACTTTATCACCGAATGTATGTACCTT
i caeJap4.Scaffold4951 C 0 C 0

a score=-2830.000000
s ce10.chrX             2110346  9 + 17718866 TTGAGTTTC------------------
s cb4.chrX             13590659 27 - 21540570 ttgcgtttttttacGTGGTTGAGATAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361952  7 +  4500979 CTGTG--------------------GC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2864537  9 -  4147112 TTGAGATTC------------------
i caePb3.Scfld02_0     C 0 I 26
e caeJap4.Scaffold4951     6020  0 +   152553 C
e caeSp111.Scaffold629 33065877  0 + 33334924 C

a score=-875.000000
s ce10.chrX             2110355 13 + 17718866 GCTACCAATATTC
s cb4.chrX             13590686 13 - 21540570 GCAGCTTATATGC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361959  2 +  4500979 GC-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065877  7 + 33334924 ------AATATTC
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I
e caeJap4.Scaffold4951     6020  0 +   152553 C

a score=-6701.000000
s ce10.chrX             2110368 66 + 17718866 CAAAAAAATGTGTAAGAGTTGATGATTTTTAATTTTTCAAATAATTCTTCCAATTCGGGCACTTGC---------------------------------
s cb4.chrX             13590699 76 - 21540570 AAACAGATTCATTCA-----GGTGTTCTCTAGGTTTTCTA-----TGTT-------------TTGCTATATTCACAAATGGGCATAATATGTAGATCGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361961  4 +  4500979 --------------------------------------------------------------TTGC---------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I
e caeJap4.Scaffold4951     6020  0 +   152553 C
e caeSp111.Scaffold629 33065884  0 + 33334924 C

a score=19.000000
s ce10.chrX             2110434 83 + 17718866 CGGAGAAAAATTGTTCTGATTTAAAAAAT----ATCGTTCGAATATAATCATACTAGGTTGATTACAT----GATTTTTATTTTAAAAGTT
s cb4.chrX             13590775 83 - 21540570 CCGAAAA--------CCGAACTAAAGAAttgtaattttctgaaagcgATTAACTCATGGTCCGTACGCATGCGATTCTTATTATAACCGCG
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I
e caeJap4.Scaffold4951     6020  0 +   152553 C
e caeSp111.Scaffold629 33065884  0 + 33334924 C
e caeRem4.Crem_Contig0  4361965  0 +  4500979 C

a score=-3344.000000
s ce10.chrX             2110517 42 + 17718866 ATTCCAAATTTCGCGACAGTTTAGCG---ATTTTAGTCCTACACA
s cb4.chrX             13590858 40 - 21540570 --CGTGAACGGCGGAACAGTTTTTTGTCAACTTTCG---CGCAAA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33065884  6 + 33334924 -----------------------------ACTTC----------A
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I
e caeJap4.Scaffold4951     6020  0 +   152553 C
e caeRem4.Crem_Contig0  4361965  0 +  4500979 C

a score=-1674.000000
s ce10.chrX             2110559 25 + 17718866 AATCAGTCCCAAAATCATTATTCAG
s cb4.chrX             13590898  9 - 21540570 ATTC----------------Gccag
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33065890  9 + 33334924 AACC----------------TTCAg
i caeSp111.Scaffold629 C 0 I 4
s caeJap4.Scaffold4951     6020 25 +   152553 AATCAGAACAAAAACGAATACTCTT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I
e caeRem4.Crem_Contig0  4361965  0 +  4500979 C

a score=-8225.000000
s ce10.chrX             2110584 26 + 17718866 ----AAAAGAAAAATGTTTTTTTAAAATTC
s cb4.chrX             13590907 21 - 21540570 ----aaaacttcaatttcttat----ttt-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361965 22 +  4500979 ----AAAA---CAAATTCGTATTTGATTT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065903 11 + 33334924 ----------atattttttta---------
i caeSp111.Scaffold629 I 4 C 0
s caeJap4.Scaffold4951     6045 17 +   152553 ATCGCAAA---TAAACTTTT----------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2864546 26 -  4147112 I

a score=245862.000000
s ce10.chrX             2110610 299 + 17718866 CAGATACCCCTGCAGATTGGACTGGCCTTCACACATTCACTTGGGTTCTCAATTGTTTTGCCATTTTCCTCATTCTTGCAGCCCATGAGCACTATAGTATTGATGTTTTTATTGGTAACACTCTTATCGTAAAACGATAACTT------ATCAAAC--------TTGATTTCAGCATTTTACATCAGCTCTCGCATGTTTTTGTATTACCACGCCTATGCCTACAACCACGCTGGTATCACTGCAACGGATTATAGGATGAGGACCTGGTTCCCGCTCGGGTGGTTCTTTGAATATGGATCGCAAGGAAAAGT
s cb4.chrX             13590928 298 - 21540570 cagacaccCCTGCCGACTGGACCGGACTCCATACATTCACATGGGTACTCAACTGCTTCGCAATCTTCCTCATCCTTGCTGCACATGAGCATTACAGCATTGACGTCTTCATTGGTGAG-----------TCAACTAGCGTTT----TCATTGCTCAATGAACTTTTGTTTCAGCATTCTACATCAGCTCCCGCATGTTTTTGTACTACCACGCCTACGCCTACAATCATGCCGGTATCACCGCCACCGACTACCGAATGCGGACCTGGTTCCCGTTGGGATGGTTCTTCGAGTATGGGTCGCAGGGAAAGGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4361987 303 +  4500979 CAGACACACCAGCGGATTGGACTGGTCTTCATACCTTTACTTGGGTTCTCAACTGCTTTGCAATCTTCCTCATTCTTGCTGCTCATGAGCATTACAGTATTGATGTCTTCATAGGTAAGAA--TAA--AATGAGTTGGTTTTTGAGCTAATCGCTT------TGTTTCTTTCAGCATTCTACATCAGCTCTCGTATGTTCCTGTACTACCATGCCTACGCCTACAACCATGCTGGAATCACTGCAACCGACTATCGTATGCGAACTTGGTTCCCCCTTGGATGGTTCTTTGAGTACGGATCACAGGGAAAGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33065914 293 + 33334924 --gatacTCCTGCCGATTGGACTGGACTTCATACCTTCACATGGGTTCTCAACTGCTTTGCCATTTTCCTCATCCTCGCTGCTCATGAGCATTACAGTATTGATGTTTTCATTGGTAAGAA--TTATAATGGGAACATCATTT----GAACCTTTT------------CTTCAGCGTTCTACATCAGTTCTCGTATGTTCCTGTACTACCATGCTTACGCCTACAATCATGCCGGAATAACTGCGACAGACTACCGTATGCGTACATGGTTCCCACTTGGATGGTTCTTTGAGTATGGTTCGCAGggaaaagt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2864572 301 -  4147112 CAGATACTCCTGCTGACTGGACTGGACTCCATACGTTCACATGGGTTCTCAACTGCTttgccatcttcctcatcctgGCCGCCCATGAACATTACAGTATTGATGTTTTCATTGGTAGGAAGTTGATGAATGAAACGTGaaat----aaactattt--------ttgatttcagcatTCTATATCAGCTCTCGAATGTTCCTGTACTACCACGCCTACGCATACAATCACGCTGGTATCACTGCTACCGATTATCGCATGCGAACATGGTTCCCTCTCGGATGGTTCTTTGAATACGGTTCTCAAGGAAAGGT
i caePb3.Scfld02_0     I 26 C 0
s caeJap4.Scaffold4951     6062 253 +   152553 CAGACACTCCTGCTGAATGGACTGGCCTTCATACATTCACCTGGGTCCTCAACTGTTTTGCTATCTTCCTCATTCTGGCTGCTCACGAGCATTACAGTATTGAtgtttttatt------------------------------------------------------------gcattttacATCAGCTCAAGAATGTTTTTATACTACCATGCTTACGCATACAATCACGCTGGTATAACCGCTACCGATTATCGTATGAGAACATGGTTTCCGTTGGGATGGTTTTTTGAGTATGGATCACAAGGAAAGGT
i caeJap4.Scaffold4951 C 0 I 591

a score=1427.000000
s ce10.chrX             2110909 4 + 17718866 ACGT
s cb4.chrX             13591226 4 - 21540570 ACGG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4362290 4 +  4500979 AAGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066207 4 + 33334924 aagt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2864873 4 -  4147112 ATGT
i caePb3.Scfld02_0     C 0 I 468
e caeJap4.Scaffold4951     6315 591 +   152553 I

a score=-1632.000000
s ce10.chrX             2110913 25 + 17718866 AATATTGTAATAAATCTGCTATGAA
s cb4.chrX             13591230 17 - 21540570 ---ATTACAC--AAc---gtaagaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4362294 18 +  4500979 ---ATTACTT-GAAT---CTTGGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066211 22 + 33334924 ttttttataCAAAAA---GCATGAA
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2864877 468 -  4147112 I
e caeJap4.Scaffold4951     6315 591 +   152553 I

a score=-47.000000
s ce10.chrX             2110938 4 + 17718866 ATAC
s cb4.chrX             13591247 4 - 21540570 aaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4362312 4 +  4500979 TTAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066233 4 + 33334924 ACAC
i caeSp111.Scaffold629 C 0 I 3
s caeJap4.Scaffold4951     6906 4 +   152553 ATAt
i caeJap4.Scaffold4951 I 591 C 0
e caePb3.Scfld02_0      2864877 468 -  4147112 I

a score=67910.000000
s ce10.chrX             2110942 395 + 17718866  
s cb4.chrX             13591251 440 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4362316 390 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066240 387 + 33334924  
i caeSp111.Scaffold629 I 3 C 0
s caePb3.Scfld02_0      2865345 395 -  4147112  
i caePb3.Scfld02_0     I 468 C 0
s caeJap4.Scaffold4951     6910 456 +   152553  
i caeJap4.Scaffold4951 C 0 I 58

a score=-21659.000000
s ce10.chrX             2111337 49 + 17718866 ATTGCTC------CATCCCGGCTGATC--TT-------------TATCGATTAATC----------------------ATCATCCAAGA-CCA
s cb4.chrX             13591691 85 - 21540570 TTTTCTCGGTTGGAATATGAATTGAACCGTT---GAGTTTTG--TTTTGGATTATT--AATAGATTTTTCTATTCGCTAACGTTGTTGT-TTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4362706 86 +  4500979 TTTCGAC------AATCTTTGTTGCATAGTCACAAAATTCtacttttcggtttttttgaatcaatgaTTCTACTTGA-ATTATTCTCGTATTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066627 65 + 33334924 TTTCC--------CCCACTCGGTTAAA--TC-AATGGTCTTC--CTTCTAAGTTTT--AAG-----TTTAT-------CGTTTGATGGT-TTG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2865740 53 -  4147112 -------------CACGTTTGTGGAAC--tc---------------tcggaaattc--aaaaaatccttct-------aGTTTTAATGC-TTA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     7366 58 +   152553 I

a score=70833.000000
s ce10.chrX             2111386 212 + 17718866 CT--------------------TTGTTTTATGCACATTTTATTTAGTCAATAAA--TTATGGATTGCACTC------------------------------AAATTAC-----AAA-TAAACCAATT----------------------------T--CAGACGCG----------------------AT-----------GGGT--AT-TATGTTAGGTGTATGAAATGTTAGGAAAAA-------------------AA------AAACGAAAGACGAC-TTGCAAATAAAGATCACAGAAAGCGCT-----TACA-ACAAATATATCATTTGCA----GGTTATTGAACTGTAGAT----AGGGGGTTTTGAG
s cb4.chrX             13591776 315 - 21540570 CTACACAGACATAAAAGTATTGTTTTCTTATAAGCACTTCATTCAGACAATAAA--TTATGGATTGCACTCA----------AAATTTAATAGAGAATTataaaagac-acaaaaattaaaccaatttt------------agaattatcTGCTTT--CAGACAAAGAA----TAAGACAATAAATAAAT-----------AGTTAGATGTAAGTTAGAGGCATgaaatgttaggaaaaa-agttagaattgggaagataaaaaag-aaaagaaagacaaagttgcaaattaagaTCACAGAAAGCGTTAACGATATATGTATAT--GGGATTA-------TATAGTTGAACTGGAGGT--------TGTTTTGAG
i cb4.chrX             C 0 I 21
s caeRem4.Crem_Contig0  4362792 266 +  4500979 CT-------TGTGAGAAAAT--CTCTTTTATACGCACTTCATTTAGACAATAAA--TTATGAATTGCACtc-----------aaatttaatg---------aaattac-ACAGAAA-GGGACCAATTAT------------CAGAATATCTGCTTT--CAGACAAGTAAAT--TAATGAATAAAGTAAAG-----------GATT--ATATAAGTTAGAGGTATGaaatgttagaaaaac-a-----------------aaattaa-aaaagaaagacaac-TTGAAAATTAAGATCACAGAAAGCGCT-----TACATATAAAT--AGGAC---------GATTATTGAACTGTAGG------------TTTGGG
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33066692 272 + 33334924 TT------------AGAAAT--ATGGTTTATACGCACTTCATTTAGACAATAAA--TTATGGATTGCACTC-----------AATTTTAATA---------GAATTAT-ACAGAAA-AATACCAATT--------------GAAATAATCTGCTCT--GGGACAaggaaata-agaagaagtagTCAAAT-----------AATT--ATGTAAGTTAGAGGTATGaaatgttagaaaaaaccata--------------agattagaaaaagaaagacaaa-tttcaaataaagatcacagaaagCGCT-----TACA-ATAGAT--AGGATTG-TT----GTAGATTGAACTGTTGGT--------GGCTTGAAT
i caeSp111.Scaffold629 C 0 I 7
s caePb3.Scfld02_0      2865793 299 -  4147112 TC-----AAGTTAAAGACAC--ATTTTTAATACGCACTTCATTTAG-CAATAAA--TTATGGATTGCACTC-----------AAGTTTAATA---------GAATTAC-ACAGAAG-AA-ACCAATTAC-------AATAGGAAGTTATCTGCTCTCagagagtaagaaatatataataagttatagaatattatagagaaagtt--atataagttagagGTATGAAATGTTAGAAAAAA-CATT--------------AGATTAG-GAAAGAAAGACAAC-TTGCAAATTAAGATCACAGAAAGCGTT-----TACA-ATAGGTGAAGGGTTGATT----ACTTGTTGAACTGGTAGG--------TACTTGAAG
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951     7424 276 +   152553 --------------------CTTTGTATTATGCACACtttattcgagcaaaaaacgCTATGAATTGCACTAACaaaatatggaattacgaga---------aaattacaataaaaa-ttgaaaaattgaggggaaaaataaataaatatctgCTTT--CAGACGG-----------------------AC-----------GAAT--ATATCAATTAAGCGtatgaaatgtttaaaaaaa-g-----------------aaa-----ataagaaaGACAAC-TTTCAAATAAAGATCAGAGAAAGCGCT-----TATA-ACAAAT--AGGAGGTGTTCGGGTATTGTTTAATTGCAGTTATTCAGGGAAATTTAAT
i caeJap4.Scaffold4951 I 58 C 0

a score=422.000000
s ce10.chrX             2111598 1 + 17718866 A
s caeRem4.Crem_Contig0  4363059 1 +  4500979 A
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33066971 1 + 33334924 A
i caeSp111.Scaffold629 I 7 C 0
s caePb3.Scfld02_0      2866094 1 -  4147112 g
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold4951     7700 1 +   152553 A
i caeJap4.Scaffold4951 C 0 I 28
e cb4.chrX             13592091 21 - 21540570 I

a score=240.000000
s ce10.chrX             2111599 33 + 17718866 AGAGGGGCGGGGGGCAA--ATTGTCAGATACATAA
s caeRem4.Crem_Contig0  4363060 28 +  4500979 AC--GGGTTGGAAACGAgcagtttcaataa-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33066972 33 + 33334924 ATTAGGGTTGATAACGA--ATTATCAAGAACACGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2866095 33 -  4147112 atgaaaattagaaaaaa--attatgaaaaacacAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     7701 28 +   152553 I
e cb4.chrX             13592091 21 - 21540570 I

a score=-7087.000000
s ce10.chrX             2111632  9 + 17718866 ------------AATGGTGGA
s cb4.chrX             13592112 10 - 21540570 --------GATTGTAGAT---
i cb4.chrX             I 21 C 0
s caeRem4.Crem_Contig0  4363088 13 +  4500979 --------aaatagagataaG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33067005 21 + 33334924 GGTATATGGAGCACTAGTGaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2866128 17 -  4147112 AGGATA-GGCATATTTGC---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     7701 28 +   152553 I

a score=-18872.000000
s ce10.chrX             2111641 38 + 17718866 TGCTT-----CTCTAATAGCAC-ACGTTAATAAAC--A-----AATATAA------------T
s cb4.chrX             13592122 35 - 21540570 ------------AAAAGACTACAG---GAATGAATTAA-----AATATTA------TGTT--T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4363101 42 +  4500979 TG----------AAAGTACTAC-G---GAATAAAT--G-----TATATTAATTGACGGTTAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33067026 33 + 33334924 ------------taaatattat-a---aaaCGGAT--TGTTCCAATTTGA------------C
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2866145 26 -  4147112 --------------AATACTAC-A---GAATGAAT--T-----AATATTA------------T
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951     7729 22 +   152553 tgtttttctacCAAAATATAAT-----------------------------------------
i caeJap4.Scaffold4951 I 28 I 84

a score=-21212.000000
s ce10.chrX             2111679 92 + 17718866 AGGtatttaaaaaattca------aataaattattgaataaataCGAGATTTTTGAGTAAATATATATTAATTGACAAGTGTGTTCCAATAGTGAGAT
s cb4.chrX             13592157 56 - 21540570 AGTT--CCATTAGAATTG------GGCGAA--AGTGCACAA-AGTGAGATC-----GGAAC------------------CGTGTGCCG--------AT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4363143 69 +  4500979 AATT--CCAATTGTTTTGCAGTATGAACAA--AGTCAGTGATAGTGAGATC-----GGAACAAT------------TGACATGTCCGA--------TT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33067059 46 + 33334924 ACAT--------------------GATGAC--AATGAA----TGTGAGATC-----GGAAACGT------------TGGTATATCCGA---------T
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2866171 24 -  4147112 AC----------------------------------------TGAGACATT-----GGAAGTG--------------------TCTCG---------T
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     7751 84 +   152553 I

a score=1036626.000000
s ce10.chrX             2111771 1339 + 17718866  
s cb4.chrX             13592213 1390 - 21540570  
i cb4.chrX             C 0 I 35
s caeRem4.Crem_Contig0  4363212 1304 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold629 33067105 1293 + 33334924  
i caeSp111.Scaffold629 C 0 I 9
s caePb3.Scfld02_0      2866195 1297 -  4147112  
i caePb3.Scfld02_0     C 0 I 9
s caeJap4.Scaffold4951     7835 1358 +   152553  
i caeJap4.Scaffold4951 I 84 C 0

a score=-4266.000000
s ce10.chrX             2113110 33 + 17718866 TCAGTGGCAAGTACTCAACGAATAGGAGCGTGT
s caeRem4.Crem_Contig0  4364522 27 +  4500979 GCGGTGCCAAATG------GAATACGACATTGT
i caeRem4.Crem_Contig0 I 6 I 9
s caeSp111.Scaffold629 33068407 24 + 33334924 GAGATGGCAAATA------ACA---GACTttat
i caeSp111.Scaffold629 I 9 I 10
s caePb3.Scfld02_0      2867501 24 -  4147112 GGCAATGCAAGTA------GAA---AACTTTGT
i caePb3.Scfld02_0     I 9 I 10
s caeJap4.Scaffold4951     9193  7 +   152553 --------------------------AATGTGG
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13593603 35 - 21540570 I

a score=49980.000000
s ce10.chrX             2113143 220 + 17718866 ACGGAGAATGCGAAAATACCAATGACTAGTGGGA-----AT----AATATGA-----TT----GTATATG----------TTATGACGACAAATGCAGC----AGATTTTC-GTCGACCCGA---CG-CACAAGAACAGAGAC--TTAGAGTAAATAG-GAACTTGTTTTCAGATAAAGACA-GTAAGAATGGTCTTGAGA-TATAAATCG---------CATCGAGTTGC---AATTTAATTTGGAATCGGAATGCGATGAGATGA----------------------------AAAACTT
s cb4.chrX             13593638 232 - 21540570 ACTA--------AGAATGAAAA-GAACGATGGAT-----GGATATAATGTGG-----TAGAGTATATAATCGAGTGATGATGACGACGATAAATGCAGC----CGATTTTCTTGCGG-CCGCAGAAG-AACGAGAACGGAGACGATTAGAGTGAACACGAAACTTG-TTTCAGATTACTAGATGACTGAATGGTCTtaagatgagaaaaat---------tatCTCGTTTCATAAA-------------AAGAATCGCAAAAATAAC-------------------AATA---TAAACATAT
i cb4.chrX             I 35 I 33
s caeRem4.Crem_Contig0  4364558 202 +  4500979 ACTAGAGGC---AAAATGAGAGTGAACAGTGGGG-----AGA---AGTTTGG-----TA----ATATAAT----------TGATGACGACAAATGTAGC----CGATTCTC-GACGA-CCGC---GA-GACAAGAACGGAGAC--TTAGAGTGGATAT-AAACTTG-TTCCAGATTACTAGATGAGAGAATGATCTTGA---GAAAGAAAT---------TATCTCGTTTC---AA-------------AACAATGCGAATAATAAc----------------------------aacaatt
i caeRem4.Crem_Contig0 I 9 I 149
s caeSp111.Scaffold629 33068441 206 + 33334924 attggag-----agaATGACAAGAAGTAGTGGGAGGGGAAGA---AGTATGG-----TA----ATTGAGT--AA------TGACGACGACAACAGCAGC----AAATTTTC-GGCGG--CGA---GA-GACGAGAACGGAGAT--TTAGAGTGAATGG-AAACTTG-TTTCAGATTACTAA--GAAAGAACGATCTTGAGA-TAGGAGAAC---------TGTCTTGTTCC---GA-------------AACATTGCGGCAAACAGA----------------------------AACAATT
i caeSp111.Scaffold629 I 10 C 0
s caePb3.Scfld02_0      2867535 211 -  4147112 attgaag-----aaaatgacaaGGAATAATGGGA-GGAAAGA---AGTGTGG-----TA----ATATAATTGAG------CGATGACGACAAATGCAGC----AGACTTTC-GGCGA-TCGA---GAGGGCGAGAACGGAGAC--TTAGAATGAATGG-AAACTTG-TTCCAGATTACTAGATGAGAGAATGATCTTGAGA-TAGGAAAAT---------TATCTCGTTTC---AA-------------AACATTGCGACTAATAGT----------------------------AACATTT
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold4951     9200 231 +   152553 -------AT---GagataaaagaaaaaagtaatG-----AAA---ATTATGGCGTTCTT----ATATAATTGAA------CGATGACGGCAAATTCAGCTTAAGGAACTTT-GTCTG---GA---GA-GGCAA-----GAGAC--TTAG----------AAACTTG-TTTCAGATTACTAGATCGTGGTTTTGTCTCAAGA-TAGGGAAATCTTGTCAGACATCTTGTTGC---AA-------------AAGAGTATGAAACGTTATGTAATTTGTATACTGTTTGAATAAACTAAAAACTT
i caeJap4.Scaffold4951 C 0 C 0

a score=-41635.000000
s ce10.chrX             2113363 134 + 17718866 AGGGGATCGAA--------------AATATTTAAGTTG--CTGATTTAAAGGTAAGCTTTAAAAT----------AAATCGTTTTGAAACGTTCAAAATCAAAAA-TAAATT---TTAAAAGATTCAATTTGAAAAA--AAAACGTCATTCACT--------AATAACT--CAACT
s cb4.chrX             13593903 124 - 21540570 GGGGGATCGAAATG------TTTGTAAAATCCAATTGATTTGTTTTAAGAAGTAATCAATTGGTA-------TAGACACT----TGAC--ATTGTAAgcttaaat--------------gaaaaa-aatatgataaa-----------gTACCT--CTGAAGAATACCTCT-----
i cb4.chrX             I 33 C 0
s caeSp111.Scaffold629 33068647 135 + 33334924 --TGAATTCGTATGATGCTTTTAGTGAAATATAGACTA--GAGATTAATAAGCATCTCGTAGTTC------TTTGATGCTGCA-TAACAcatttcgaatcgaaat--------------gagaaatgtttcaacaaa-----atgtaattgttt--ctga--aatacCT-------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2867746 137 -  4147112 --TGGATCTGaagaacga-------aaatttttcccta--TGTATTA--GAACAATTAATAAAAC----------ACATTATATTGACAAATGTTACAAGGAAAC-TACA------TAAAAGAAGTGATAGAACAAATGAATAAATAGGTACTTTATTAA--AATACct-------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951     9431 106 +   152553 --------------------CCTAAATAACATAAATTG--TCT------GGTCAATTGGTAAATTGGTCTATTATGTACTAATCTAGTAAGTAGTGTTATGAAATGTTCATTAGACCATCATAACAATTTTAAC------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4364760 149 +  4500979 I

a score=31094.000000
s ce10.chrX             2113497 131 + 17718866 GAAATAATGTTGTACACATATTTCCCGGT---------GAGAGGCACAACGCAA---TAAATGAGA--ACG-ACGATCAA-AAG-----TGAATGATGGCATA---------TCATAAGTTAGGAGGCGAAGTCCCTACG---------AGAACTGGATTC---TAGATGTCT
s cb4.chrX             13594027 141 - 21540570 GAA--GAAAACGACCACCT----TTCACC---------GGGCCGG--AGCGCAAGACTAAATGAGGATATA---GAACGG-AATGTGGAGAATAAATGGCAGA---------TCCTAAGTTAAGAAGCCAAGTCACCCCCCTCCTCCGAAAAACTGGATTTGACTGTCTG--T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4364909 119 +  4500979 AAA--TGAGTAGACCACAT----TTCGCC---------GAGAAGAACAACGCAA---TAAATGAGG--ATG---GAACGA-AAC------AAATGATGGCAGA---------TCCTAAGTTAGGAGGCAAAGTCCCC------------GAAACTGGATTT---TGTCTGTCT
i caeRem4.Crem_Contig0 I 149 C 0
s caeSp111.Scaffold629 33068782 122 + 33334924 GAG--ACTGCCACCCGTAT----TTCATC---------GAGAAGCACAACACAA---CAAatgaag--atg---gaaaag-aag-----tgaaTAATGGCAGA---------TCTTCAATAAGGAGGAGAGTCCTCCTC----------GAAACTGGATTC---TGTCTGTCT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2867883 127 -  4147112 gagaaaataagaaacagaTTATATTCACC---------AATAGGCACAACACAA---CAAATGAGA--ATG---GAACAG-AAG-----CGAATAATGGCAGA---------TCTTAAGTTAGGCGGTGAAGTC-CCCC----------AAAACAGGATTC---GATCTGTCT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951     9537 143 +   152553 GAGCAGATAATGATAATAT----TTCGGTAtgtgaaaaaagaaacacaATACGA---TAAAAGAAG--AAGTCCAAACAATAAG-----CAATTAATGGCAGAATATTAGTGTTTTAAGTTGAGAAGAGAAGTCGT-------------TAAACTGGATTA---TATGCGTCT
i caeJap4.Scaffold4951 C 0 M 17542

a score=37457.000000
s ce10.chrX             2113628 249 + 17718866 AGCTAGCGGGTTCATTGGCGGCGATGGATATCATATCCACAAAAGTGGATT-CGACATTATCACTTGCCGAAACGTTTTTTT---TCTAGATG-----AAGACGCAAATAATCAAGTTTT-----TGCCACT--------------TGATACTTA--GATTGCATTTGGAGATTATTCAACCGCAAGCC--------------TGGGT------TCGAA------------------------------------------------AAAAA-----------------------CATACAAGGGATGTAGAG---AATTTTGAAATTTATAATTAG----------------TTATGTA-----AAATAAA--------------------AATAATGTGAATA---ATCAAAAAT------
s cb4.chrX             13594168 240 - 21540570 GCCGAGCGGGTTCAT---CACTAGTGGTGACCACATCCACAAAAGTGGATTCCGAC-TTATCAC-TGccgaaacgtttttt----ttttcttg-------gatgaagacaatcaagttttttttctgccactGTCGCCGCGCAATTAGA-------TGATTGCATTCGACGATTATTCAACCGAAGATAATGAG------AAGGGGAC-----ACaaaa------------------------------------------------aaaGA-------------------------------------------------GGGGCTATCCGATTTT----------------TTCCCGA-----CTTTAA---------------------AATATTGTGTTGAT----CGGGAAT------
i cb4.chrX             C 0 I 112
s caeRem4.Crem_Contig0  4365028 267 +  4500979 GCCTAGCGGGTTCATTGGCGGCGATGGTCACCACATCCACAAAAGTGGATT-CGAC-TTATCACTTGCCGAAACGTTTTTT----GCTAATAGTGTGGAAGGCGCAGACAATCAAGTTTT-----TGCCACT---ACCGCGCAATTAGATACATAGTGATTGCATTCGAAGATTATTCAACCGAAAAATAT------------GGGGT-----ATCGGa------------------------------------------------gaaga------------------------ttttttctgattag------aTGAGGGGATTATCCAACTAG----------------GATTGAA-----CTACAGG------------GACCAGTCACCACTGTTCTAA--------AAAT------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33068904 317 + 33334924 GCCTAGCGGGTTCACTTGCGGTAGTGGTGACCACATCCACAAAAGTGGATT-CGAC-TTATCACTTGccgaaacgtttttttttctctgtgagAGGGTAAGGCGCAGACAATCAAGTTTT-----TGCCACC---GTAGCGCAATCAGATATTTGGTGATTGCATTAGAAGATTATTCAACCAAAAGATATGGATATC--AAAGGGATTGCCAGTCTGA---------CTGTTCCA----------------------GCCTTTTCTAACAA------------------------------ATGATTTAAACTGTACCTCAAAATtgttcaatcaaaaaagttgagaGCGTGATATAGA-----ccccaaa-----------------------atttttcatatagatcccaaaa-----t
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2868010 395 -  4147112 GCCTAGCGGGTTCATTGGCGGCGGTGGTGACCACATCCACAAAAGTGGATT-CGAC-TTATCACTTGCCGAAACGTTTTT-----TCTAATAGATTGGAAGGCGCAGACAATCAAGTTTT-----TGCC--------AGCGCAATTCGATACATAGTGATTGCATTCGAAGATTATTCAACCGAAAGATATGGGTATCCGCGGGGGGTGTATGATCTAAGATGAAGCCCTATCCCATCAATGcgctatttttgaaaataccttTGATAAAAAAGATAAGATTATCAGAGAATATCAATGTTCATGATGGGAAC---ACGTTCGAATTTTGCAAGTGaagtaaacaaaaat---atacaaattgTGCACCAAGCTGACGTTATAATGATAGCGGGTACTTTTCTAAT--CTTGcaaaatcgatt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     9680 17542 +   152553 M

a score=-9792.000000
s ce10.chrX             2113877 68 + 17718866 TATGCT---AGGCAAAGTATATCCCCTTGAACACTTGTTGCCAGAA---------------------------TATTAAACGTCGATTTTGAATCAGT
s caeRem4.Crem_Contig0  4365295 93 +  4500979 TGTGACACTAGGAATAAGGCATTGTGTTCAACTTTGTTTTCAGCAATTAAAAACTTACAGCATTCACTTCAAACTTTGCACTACAATGATAAA-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069221 46 + 33334924 ---------tgaaacagGCTA-------AAAGGATGAaatcataaa--------t------------------ttttaaGGTTAGATT----------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2868405 60 -  4147112 ---------tgaaaaaagctg------tAAACAGCGATTTCCCAAACAATGAGCT------------------CTTTGTGAGCAGATTAtaaa-----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     9680 17542 +   152553 M
e cb4.chrX             13594408 112 - 21540570 I

a score=-13396.000000
s ce10.chrX             2113945 64 + 17718866 TGTCATTTAAAAAAA-----ACTTTTAA-----------------AAAGTTTAA-----------AAATCAATAAG----TTTTTGTACAAGACGGACGGG
s caeRem4.Crem_Contig0  4365388 86 +  4500979 TAATATCAACAAACA---ATACTGttaaaaac-agtg--------aaaaagcTATAAATGGAAGTAACCTAACGAAA---ATTCTGTTCAATGAGAGGAAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069267 76 + 33334924 CATAATCTGAGAAAT---AGGTTTTTAT-----------------AATGACCTACAtata-----aaatgattgaaaaagaatctgttcaaagtttgaaaa
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2868465 93 -  4147112 tgaaattcaagaaaa---tgaggtttatcaaa-aattgtacgGAAAATATCCGACATGTACAGATAAAGCATTGAA----GATCTGTTCGAAGTAGGAAAA
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951    27284 73 +   152553 tgtCATTGCGAAGAGTTTAAACATTTACAATCTAGTA--------AGGATTTTA-----------ACATCACTGATG---AATGTGtagagaaag------
i caeJap4.Scaffold4951 M 17542 C 0
e cb4.chrX             13594408 112 - 21540570 I

a score=47137.000000
s ce10.chrX             2114009 129 + 17718866 ---AGGAAATACAA-------GAATCGACGCCACAGTGGGTAATAAAAAGAG-GTCT-TCTAAAGGTAATCAATTCAAGATACAGGTCAGAACTTTCACCGGCTTTGCCTGACGAAGAGTCAAATGTCTAAACGTCTGCAC-------
s cb4.chrX             13594520 101 - 21540570 ----aagaaatcaa-------gaa--gaagAGACGGCGGGTAATAAACTTA--GTGA-TTGCTAGCCAATCGATTCGAGATGGAGGTCAATACTTTTCCC-------------AAGAAGTCAAGAGACCA------------------
i cb4.chrX             I 112 C 0
s caeRem4.Crem_Contig0  4365474 126 +  4500979 ---AATGAAAACAA-GGGTAGGAA--GACGCCACAGCGGGTAATAAACTAA--GTCT-TCAATGGGTAATCAATTCGAGATGCGGGTCAGAACTTTCACCGAATTCG-----TAAAGAGTCGAGAGACTAATAGTCTAAC--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069345 118 + 33334924 ---agggaagacaa-gaagaaaaa--gacgcCACAGCGGGTAATAAA------------CTAAGGGTAATCAATTTAAGATGCGGGTCAGAACTTTCACCGACTTCG-----TTAAAAGTCAAGAGGTTGACAGTCTGAAC-------
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0      2868560 124 -  4147112 ---AGGCAAAACAAGGAAAGGAAA--GACGCCACAGCGGGTAATAAA------GCCT-TCAATGGGTAATCAATTCGAGATACGGGTCAAAACTTTCGCCGATTCAG-----TTGAGAGTCAAGAGACTAATGGTCTGAAC-------
i caePb3.Scfld02_0     I 2 I 40
s caeJap4.Scaffold4951    27357 133 +   152553 aaaaaggaaaagaa--------aa--tacgCTACAATGGATAATAAAGTCAATGTCTCTCGAGGGGTAATGAAATTGAAATGCGGGTCAGAACTTTCACCGGCTTTG-----TCAATCGACTCGAGAGGAATCGTCTGGACAAATCAT
i caeJap4.Scaffold4951 C 0 C 0

a score=-1107.000000
s ce10.chrX             2114138 1 + 17718866 -A
s caeRem4.Crem_Contig0  4365600 1 +  4500979 -A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069463 1 + 33334924 -A
i caeSp111.Scaffold629 C 0 I 49
s caeJap4.Scaffold4951    27490 1 +   152553 T-
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2868684 40 -  4147112 I
e cb4.chrX             13594621 0 - 21540570 C

a score=-59.000000
s ce10.chrX             2114139 9 + 17718866 CCCTACTGC
s caeRem4.Crem_Contig0  4365601 7 +  4500979 Ggccact--
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951    27491 9 +   152553 CCCTACTTC
i caeJap4.Scaffold4951 C 0 I 117
e caePb3.Scfld02_0      2868684 40 -  4147112 I
e cb4.chrX             13594621 0 - 21540570 C
e caeSp111.Scaffold629 33069464 49 + 33334924 I

a score=-265.000000
s ce10.chrX             2114148 28 + 17718866 ACGAAAGTGTTATATTTAAACAATATTG
s cb4.chrX             13594621 12 - 21540570 ----------------TACACAAAACTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4365608 19 +  4500979 ---------cttttttttttcaaaactg
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2868684 40 -  4147112 I
e caeJap4.Scaffold4951    27500 117 +   152553 I
e caeSp111.Scaffold629 33069464 49 + 33334924 I

a score=-7163.000000
s ce10.chrX             2114176 38 + 17718866 --TCACAGAAATCTAGATGCT--TAAAATATATCTTAAA----GTG--------------
s cb4.chrX             13594633 16 - 21540570 T----------------------Tcacataaa----aaa----gaa--------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4365627 33 +  4500979 tgtcTCG-----TCAGACAcctataaaatcaa----aaa----aaa--------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2868724 38 -  4147112 --tcacG----------------CAAAATTAG----AAGTCTCGAATTTCACATagtttt
i caePb3.Scfld02_0     I 40 C 0
e caeJap4.Scaffold4951    27500 117 +   152553 I
e caeSp111.Scaffold629 33069464 49 + 33334924 I

a score=-15667.000000
s ce10.chrX             2114214 86 + 17718866 --------------CAATCAAAAGTATCGAAAGTTCAGAAAAAGCTGATTCTCGGCAAGA--TTTCATCTGTAG-AGGGCCCCCCGAAGACGT-TAAAGCAACA
s cb4.chrX             13594649 62 - 21540570 aaatcac--cTCCCGGTTC--------------------------------CAAGCAAAAACTTCCTC-----G-TAAAACTTTCTTCCTCAC-Gaatgaaac-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4365660 56 +  4500979 aacttacgataCCCTATTC--------------------------------TCAGGaaaa--ttctta-----g-aaaaaa------cgtcgt-aaaagcaac-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069513 71 + 33334924 --------------CACTCaa------caaaagaatagaaaacgaagcgaaacaacaaga--tttcac-----gaaaaaac------cgtcgtcaaaatgaaca
i caeSp111.Scaffold629 I 49 C 0
s caePb3.Scfld02_0      2868762 68 -  4147112 --------------tattc-a------caaaaaataaacagacaAAGAATTCTaaaacaa--ttttgt-----g-aaaatc------agtcgt-gaaagaagca
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    27500 117 +   152553 I

a score=101135.000000
s ce10.chrX             2114300 164 + 17718866 AAAATG--ATGAAAACAAAATGTCCGTGCA-GT-CTTTTATACGGGGAGACCTGGTTT---AGATTGCCATCAT-------------CCCTGGCATAC-ACTCCTTTTGTCTTTCC-ATCCTTCA--------------TCTCTTATCAAAAGTGAA--ATGCCAATC-----CAGATTTTTGCGTACACAACGAAATAAGGACATT
s cb4.chrX             13594711 200 - 21540570 aaaatattttgccAATTTCATGCCGGTGCTTGG-CTTTTATACCGGGGGACCTGGTTTCTGCGGTCGGCATTATCGCTCTCCCCCGGCTATGGCATTTACACCCTTTtgtcttttt-gtttcttattCTCTCTTTCATTTCTTCTATCAAAAGTCGAGTGTGGCAATC-----CAGATTTTTgcgtaaaaatcgaaataaggACATT
i cb4.chrX             C 0 I 9
s caeRem4.Crem_Contig0  4365716 164 +  4500979 aaaatg--gtgaaaataaaat-CTAGTGCTGAT-CTTTTATACTGAGGCACCAGGTTT---CGGATGGCATTAT-------------CCGTGGCATC--CACCCTTTTGtctttttcgtttctta--------------tCCCTTATCAAAAGTCAA--GTGGCAATC-----CAGATTTCTGCGTACAAATCGAAATAAGGACATC
i caeRem4.Crem_Contig0 C 0 I 99
s caeSp111.Scaffold629 33069584 163 + 33334924 aaaaag--gtgaaaatgaatt-cccGTGCAGGT-CTTTTATACGGAGGGACCTGGTTT---CGGTTGGCATTAT-------------CCGTGGCATAT-TCCCCTTTtgtcttttc-gtttctta--------------tCCCTTATCAAAAGTCAA--GTGGCAATC-----CAGATTTCTGCGgacaaatgaaaataaggACAT-
i caeSp111.Scaffold629 C 0 I 11
s caePb3.Scfld02_0      2868830 162 -  4147112 aaaatg--gtgaaaataaAAC-CTGGTGCAGGC-CTTTTATACGGAGGGACCTGGTTT---CTATTGGCATTAT-------------CCGTGGCATA--CCCCCTTTTGTCTTTTC-GTTTCTTA--------------TCCCTTATCAAAAGTCAA--GTGGCAATC-----CAGATTTCTGCGTACAAATCGAAATAAGGACAT-
i caePb3.Scfld02_0     C 0 I 11
s caeJap4.Scaffold4951    27617 162 +   152553 aaaatg--agaaaaaagaaat-cc---GTAGGTGCTTTTATAGGGATCAATTTTGCAT---TGATTGGCATTAT-------------CTCTGCCACA--CATCTTTCTGTCTTTTT-----CATA--------------TCCGTTATCAAGAGTCAA--TTGAAAATCCAGTTCAGATTTTGACATGTTGATCAAAATAAGGACATC
i caeJap4.Scaffold4951 I 117 C 0

a score=520.000000
s ce10.chrX             2114464 3 + 17718866 CAA
s cb4.chrX             13594920 3 - 21540570 CAA
i cb4.chrX             I 9 C 0
s caeSp111.Scaffold629 33069758 3 + 33334924 AAA
i caeSp111.Scaffold629 I 11 C 0
s caePb3.Scfld02_0      2869003 3 -  4147112 AGA
i caePb3.Scfld02_0     I 11 C 0
s caeJap4.Scaffold4951    27779 3 +   152553 GGA
i caeJap4.Scaffold4951 C 0 I 45
e caeRem4.Crem_Contig0  4365880 99 +  4500979 I

a score=-1806.000000
s ce10.chrX             2114467 63 + 17718866 ATGTA--GATGTCTCAAGTCACTT-TGTTGCAATTCCTATTTTCCATCATTTCGTTGAGAAAAGGA
s cb4.chrX             13594923 54 - 21540570 TACTG--AATCTgtc---cttcgc-gcccccgtttTCTA--TTTGATC-TTCTGTTGGCAACA---
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33069761 58 + 33334924 GATTGAAAACGTCTT---CTACTC-TGTTgccttttctatttttcgtt-tttcatgcCTTCCG---
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2869006 57 -  4147112 CACTG--AATCTATT---CTACTCTTGTTgccttttttaattttcatc-tCTCTTACGCATGA---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    27782 45 +   152553 I
e caeRem4.Crem_Contig0  4365880 99 +  4500979 I

a score=-10796.000000
s ce10.chrX             2114530 94 + 17718866 AAATGCTAAAATGTTCTAGATCTTT-----AATTATTTCATAGTTGTTATTGCAATAGTAAGTTGTTAGTTGAGATCGAT--GAAAGTATAAAATAAAACT
s cb4.chrX             13594977 94 - 21540570 -------AGAGTGTTCTCAATGTTTAGTCGAGTGTTctcaaaattattaatttaggattctgtttcgaaaaaaggcgGAACGGATTTTATGaggtaaaata
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold629 33069819 76 + 33334924 -------AAAGTGTTCTCAATCTTT-GACAAGCTTTGATTTGAAC-------GAAGATCACGTTATCCAGTTGGTTAGAA----------Gctattcaaca
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2869063 90 -  4147112 -------AAAGTGTACCCAATCTAT-GACCAGCGTTCACTGAAACAATG--TGAAGTTCTGATTTCCAAATAGATTAGAA-AAAGTGAGTGCGATGAAATA
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold4951    27827 91 +   152553 AAATCATAAAATTTCCTTGGTCATTTATCCGATGATCATTAAAACAGAACCGGAA-AGCATATtgagaacgaaaaaaaag--caacttATGATT-------
i caeJap4.Scaffold4951 I 45 C 0
e caeRem4.Crem_Contig0  4365880 99 +  4500979 I

a score=546.000000
s ce10.chrX             2114624 1 + 17718866 T
s cb4.chrX             13595072 1 - 21540570 t
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4365979 1 +  4500979 t
i caeRem4.Crem_Contig0 I 99 C 0
s caeJap4.Scaffold4951    27918 1 +   152553 T
i caeJap4.Scaffold4951 C 0 I 73
e caePb3.Scfld02_0      2869153 5 -  4147112 I
e caeSp111.Scaffold629 33069895 1 + 33334924 I

a score=-11759.000000
s ce10.chrX             2114625 67 + 17718866 TTTTGAAGTAGTAACTTGACATAAGAAATA-ATAACTA-----A---AATAAC-TTAA--AATTTCCAA-ATAGTTTCAA
s cb4.chrX             13595073 59 - 21540570 tttt------------aaatataggaaaagttcaaatatgAGCA---Agcgtt-ttgaaaaact----g-gaaatttaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4365980 71 +  4500979 tttcgaaaaagaaacaaaaaacaggtaaagtaaaaCTA-----A---TATGTTATTAATAAACTATTag-atgatttgaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33069896 39 + 33334924 -------------------------------aaaactc-----a---attgtt-ataaaaacataaaaa-ataatttttg
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2869158 53 -  4147112 ------------------GGATGAGAATAG-AATAATC-----AAATATTgct-aaaatgaaatgaaaatatgatttt--
i caePb3.Scfld02_0     I 5 C 0
e caeJap4.Scaffold4951    27919 73 +   152553 I

a score=460278.000000
s ce10.chrX             2114692 601 + 17718866  
s cb4.chrX             13595132 594 - 21540570  
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4366051 591 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33069935 583 + 33334924  
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2869211 580 -  4147112  
i caePb3.Scfld02_0     C 0 I 22
s caeJap4.Scaffold4951    27992 591 +   152553  
i caeJap4.Scaffold4951 I 73 C 0

a score=-4538.000000
s ce10.chrX             2115293 24 + 17718866 AAAAACAATCAAAATTA---AATGATC-------
s cb4.chrX             13595728 27 - 21540570 TGAATCGATGAGGAATGACTAATAAAC-------
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4366643 22 +  4500979 -----CAATTGAGGCTACTGAATAAAC-------
i caeRem4.Crem_Contig0 I 1 I 4
s caeSp111.Scaffold629 33070522 21 + 33334924 ----tcatggaaaaatg--gaataatt-------
i caeSp111.Scaffold629 I 4 C 0
s caeJap4.Scaffold4951    28583 24 +   152553 ----------AATAATATTTAGTATACGGCTATT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2869791 22 -  4147112 I

a score=127634.000000
s ce10.chrX             2115317 154 + 17718866 -----ACGTGATA----TACATTTGATAAGTTCCGTTCTCGCATTGATATTAGTACCAAGCCCGGTGTCAACAAGAATACTTTTATCTCCATCCTTGACCAATGTGATCGATGCGATAAATGTGTATTGCCCATCAATAGTTTGTTCGGCAGAACCCT--------AAATT
s cb4.chrX             13595755 156 - 21540570 ---------GCCC----TACATCTGATAAGTTCTGTACGTGCATTGATATTGGTTCCAAGTCCGGTATCAACGAGAATACTTTTATCTCCATCTTTGACCAGTGTGATCGTTGCAACGAATATATACTGTCCATCGGCCGTTTGTTCAGCGGATCCCt--agagaaaattt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4366669 160 +  4500979 -----TTGTGGTT----TACATTGAATTAGTTCAGTTCTCGCATTGATATTAGTTCCCAGTCCAGTATCCACAAGAATACTTTTAACTCCATCTTTGACCAATGTGATCGTTGCAATAAATGTATACTGTCCATCAACGGTTTGTTCTGCCGAACCCT--AAATTATCATT
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33070543 161 + 33334924 ------gGTGATT----CACATTTGATCAATTCAGTCCTCGCATTGATATTAGTTCCTAGTCCGGTATCAACGAGAATACTTTTATCTCCATCCTTGACCAGAGTGATCGTTGCAATAAATGTGTATTGTCCATCAACAGTTTGTTCAGCCGAACCCTAGAATATATAAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2869813 161 -  4147112 -----GTGTAGTT----TACATTTCAAGAGTTCTGTTCTTGCATTTATATTTGTTCCCAGTCCGGTATCAACCAAGATACTTTTCTCTCCATCTTTGACTAAAGTGATCGTTGCAATAAATGTATACTGTCCATCAATAGTTTGTTCAGCCGATCCCT-GAATCAATAATT
i caePb3.Scfld02_0     I 22 C 0
s caeJap4.Scaffold4951    28607 163 +   152553 ACGGAGCCTGATTTCTGTACATCTAATCAGTTCACTTTTTGCATTGATATTTGTGCCAAGGCCGGTGTCGACAAGAATATTTTTATCCCGATCTTTTACCAATGTGATCGTGGCAATGAATACATATTGCCCATCAACTGTCTGTTCGGCTGATCCCT--------Gaatt
i caeJap4.Scaffold4951 C 0 I 256

a score=-4314.000000
s ce10.chrX             2115471 40 + 17718866 TTCTT---GGTTTTTTTAAAATTGTAGTCAGA---TTCCCAAGGTT
s cb4.chrX             13595911 31 - 21540570 tattt---ttttggaattgg-----agTAATACATTT-------TT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4366829 29 +  4500979 TCATT---CGTTGTCATCAA----CAGTGATA---TC-------TT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33070704 29 + 33334924 CATTC---CATTTCTATCAA----CATTCATA---TC-------TT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2869974 29 -  4147112 ccttttaatatttttttcaa----ta---aca---tc-------TT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    28770 256 +   152553 I

a score=100244.000000
s ce10.chrX             2115511 132 + 17718866 TACATTTCTCAAAACGTGAACTTCGGGCTGTTTTTCCAATTTTGTGCCCTCCAGTTGTTTGAGAATTTTTGTCAGTTCTGTGCTCAACTCCTTCATTCTAGTCTCGTATACTTCCTGCGATTTTGGAGCGTT
s cb4.chrX             13595942 132 - 21540570 TACATTTCGTAGTACATGGACTTGAGGTTGTTGATCAGTTTTTGTGGTCTCTAGTTGTTTGAGTATTTTTGTTAGTTCCGTGCTCAATTCCTTCATTCGTGTCTCGTAGACTTCTCGCGATTTCGGaggcaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4366858 132 +  4500979 TACGTTTCGTAACACAAAAATCTGAGGCTGTTGATTGCTTTTCGATGTCTCCAGTTGTTTGAGTATTTTCGTAAGTTCAGTGCTCAATTCTTTCATCCGTGTCTCATATACCTCTCGAGATTTTGGCggcaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33070733 132 + 33334924 CACATTTCGTAATACGTAGACAAGAGGCTGttgttctgtttttgaagtttccaGTTGTCTGAGTATTTTCGTTAGTTCTGAGCTCAATTCCTTCATTCGACTTTCATATACTTCACGAGATTTAGGAggcaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2870003 132 -  4147112 TACATTTCGTAATACGTAGACAAGAGGCTGTTGTTCCGATTTCGAAGTCTCCAATTGTTTGAGTATCTTTGTGAGCTCTGTGCTCAATTCCTTCATTCGACTCTCATAGATTTCACGAGATTTAGGAGccaa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    29026 132 +   152553 tACATTTCGCAATACATGCACTGTTGGTTGTAGTTCCGACTTTGAATCTTCCAACTGTTTCAAAATTCTTGTGAGCTCGGTGCTCAATTCTTTCATACGACTCTCATAAACTTCCTTTGATTTCGCACCATT
i caeJap4.Scaffold4951 I 256 I 77

a score=6936.000000
s ce10.chrX             2115643 8 + 17718866 ATCTGAAA
s cb4.chrX             13596074 8 - 21540570 atctgaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4366990 8 +  4500979 atctgaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33070865 8 + 33334924 atctgaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2870135 8 -  4147112 atctaaaa
i caePb3.Scfld02_0     C 0 I 190
e caeJap4.Scaffold4951    29158 77 +   152553 I

a score=354.000000
s ce10.chrX             2115651 3 + 17718866 TAT
s cb4.chrX             13596082 3 - 21540570 aaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4366998 3 +  4500979 aat
i caeRem4.Crem_Contig0 C 0 I 177
s caeSp111.Scaffold629 33070873 3 + 33334924 aat
i caeSp111.Scaffold629 C 0 I 147
e caePb3.Scfld02_0      2870143 190 -  4147112 I
e caeJap4.Scaffold4951    29158 77 +   152553 I

a score=282.000000
s ce10.chrX             2115654 3 + 17718866 TTG
s cb4.chrX             13596085 3 - 21540570 ttg
i cb4.chrX             C 0 I 165
e caePb3.Scfld02_0      2870143 190 -  4147112 I
e caeJap4.Scaffold4951    29158 77 +   152553 I
e caeSp111.Scaffold629 33070876 147 + 33334924 I
e caeRem4.Crem_Contig0  4367001 177 +  4500979 I

a score=0.000000
s ce10.chrX             2115657 746 + 17718866  
e caePb3.Scfld02_0      2870143 190 -  4147112 I
e caeJap4.Scaffold4951    29158  77 +   152553 I
e cb4.chrX             13596088 165 - 21540570 I
e caeSp111.Scaffold629 33070876 147 + 33334924 I
e caeRem4.Crem_Contig0  4367001 177 +  4500979 I

a score=126.000000
s ce10.chrX             2116403 5 + 17718866 TTGGC
s caePb3.Scfld02_0      2870333 5 -  4147112 TTCAC
i caePb3.Scfld02_0     I 190 C 0
e caeJap4.Scaffold4951    29158 77 +   152553 I
e cb4.chrX             13596088 165 - 21540570 I
e caeSp111.Scaffold629 33070876 147 + 33334924 I
e caeRem4.Crem_Contig0  4367001 177 +  4500979 I

a score=29.000000
s ce10.chrX             2116408 1 + 17718866 A
s caeRem4.Crem_Contig0  4367178 1 +  4500979 A
i caeRem4.Crem_Contig0 I 177 C 0
s caePb3.Scfld02_0      2870338 1 -  4147112 G
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    29158 77 +   152553 I
e cb4.chrX             13596088 165 - 21540570 I
e caeSp111.Scaffold629 33070876 147 + 33334924 I

a score=281.000000
s ce10.chrX             2116409 2 + 17718866 AT
s cb4.chrX             13596253 2 - 21540570 at
i cb4.chrX             I 165 C 0
s caeRem4.Crem_Contig0  4367179 2 +  4500979 AG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2870339 2 -  4147112 AG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    29158 77 +   152553 I
e caeSp111.Scaffold629 33070876 147 + 33334924 I

a score=33784.000000
s ce10.chrX             2116411 64 + 17718866 ATCTGTTTCATTGA-----------------TTTGTGCTTTACGCAACAT-ATCGAATTAT-AAATCTTCAATGATCGCT---AAA
s cb4.chrX             13596255 86 - 21540570 attTGTTTCGTTGGCTATTCACGAGGCAAGCTTTGTGCTTTACGCAACAATATCGATGCCTCTCATCTTCGTTGATCGTCGTCAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4367181 75 +  4500979 ATCTGTTTCGTTGA-TATTCA----ACATGCTTTGTGCTTTACGTAATAA-ATCGAGGGAT-TCATTTTCGATGATCGTC----AA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33071023 74 + 33334924 ATCTGTTTCGTTGA-TATTCG----CCATGCTTTGTGCTTTACGTAACAA-ATTGGAGAAT-TCATCTTCGATGATCGTC-----A
i caeSp111.Scaffold629 I 147 C 0
s caePb3.Scfld02_0      2870341 74 -  4147112 ATCTGTTTCGTTGA-TATTCA----ACAAGCTTTGTGCTTTACGTAACAA-ATTGGAGAAT-CCATCTTCGATGATCGTC-----A
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    29158 77 +   152553 I

a score=123161.000000
s ce10.chrX             2116475 330 + 17718866 TGTGACGTACATGTTCACATCACCTC-TGCGCAAGAC--AATCGCATGATTCT----TGCTTC--------A-TATAAAAACGAGTCT---ACACATTC-------------------------TTTTTTACGTTAG------CCT---CTTTCTTTCGCCTGATCTCCCCTCTCCCCTCTCTTTGTC---------TTTCTCTTTACGTCAACGTACATCCACGAGATGCGCCGTCTTGAAAGAGAGCAAGTTTTCGTGAAT--------------------------A---------GGC-------GCGACTTCACTCGAAGAACTTCTGGTT----TGAA-------------TGGAAGCGA--CTGTGGGGAAAAATGCGGATGCGT-------------CGTGGAAAACCGGCGGACGATC--TTTTCTCGT-GTTTCTTTTCCACTCTCCGTCCCCTTCTCT
s cb4.chrX             13596341 404 - 21540570 AATGACGTACATGTTCAAAACACCTC-TGCGCAAGACTTTGTCTCATGATTCCTGATTGCTTC--------ATTACAAAAACGagtct---ctttttctcattctctccttacaaatttgtctcttttttacgttagaatattttc---ttttttt--------------cgtctcCCCCCTATTTTCCGTTATCCATCGCATTTCACGTCAACGTATATCCACGAGATGCGCG-TCTTGAAAGCGAGCAAGTTTTTATGGATAGtgaagagagagagggagagaaagaACCG-TTGTCGGCGACGACGACGACTTCATTTGAAGGACTTCTGGTT----TTGTGTCTTCAGAGAAGATGAAGCAA-----ATAGAGGAAATGCGGATGCGT-------------TGT-GAAAACCGG-----GAATGGTTTTCTCTc-cactctctcgctctcta-----AGCCATTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4367256 333 +  4500979 AGTGACGTACATGTTCAAAACACCTC-TGCGCAAGAC--AATCTCATGATTCC----TGCTTT--------A-TATAAAAACGAGTCT---CActgtctttttctct-----------------ttttttacgttag------ctt---ctctttt--------------cttttgcctctcatcttc--------------tttcACGTCAACGTACATCCACGAGATGCGCC-TTTTCGAAGAGAGCAAGTTTTTATGGATAGTGAAG-------------------ACCG-TCGTCGGC--CGACGACGACTTCATTTGAAGGACTTCTGGTT----TCGT-------------CTGAAGCAA----CGGAGAAGAAATGCGGATGCGT-------------TGTGGAAAACCGGCGGGCGATCGGTtgtctcta-ttttctcttcatctctt-----tctttttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33071097 298 + 33334924 AGTGACGTTCATGTACAAAACACCTC-TCCGCAAGTC----------TATTCC----TGCTTTTC------A-TACAAAAACGGGTCT---CCCCATCt-------------------------ttttttACGTTAG------ccc---tttcttt--------------cttttttgtctcatCATC--------------TTTTACGTCAACGTACATCCACGAGATGCGCT-TCTTGAAAGGGAGCAAGTTTTTATGGATGGAATAG-------------------A--------AGAC-------GCGACTTC-----AAGGACTTCTGGTT----TTGA-------------CTGAAGCAA-------AGCAAAAATGCGGATGCGT-------------TGTAGAAAACCGG-CGCCgatagtttttctctagtaccctcttttctttga------cTTCTTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2870415 315 -  4147112 AGTGACGTACATGTTCAAAACACCTC-TGCGCAAGAC---ATCGCATGATTCC----TGATTT--------A-TACAAAAACGAGTC----CCTCATC--------------------------TTTTTTACGTTAG------CCcccttttttgt--------------cttttgcCTCTCATCATC--------------TTTTACGTCAACGTACATCCACGAGATGCGCT-TCTTGAAAGGGAGCAAGTTTTTATGGATAGCGAGG-------------------AC-----GTCGGC-------GCGACTTCATTCGAAGGACTTCTGGTT----TCGT-------------CTGAAGCGACGGCGGCGGAGGAAATGCGGATGCGT-------------TGTGGAAAACCGG-CGGCGATAGTTTTTCTCTA-CACTCTCTTCctctcaa---------attt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    29235 333 +   152553 TATGACgtaaatgttcaaaaaacctCTTGCGCAGAACACAATCGCGTGATTTT---ACGCTCTctctgcgaa-aaaaaaaacaagtccATAATGTGTC--------------------------TCATTTACGTTGC------GCT---CCCCTTC--------------TGTATCCCTCTCATA---------------------ACGTCAGCGTACTCCCACGAGATTCTTTGTCTTTTAAGGGAGCAAGTTTTCGTCGCT-GAGAGG-------------------ATGGTTTGGCGAC------GGCGACAATGTCCGAATGATTTCTGGTTTTTGTCGG-------------CGGTCGCAA----CGACAAGGAAATGCGGATGCATGCGCTTCTCACAGCTTTCTTATCCCG-CAGAAGTGGGATTACACGG----CCTTTTCTTCTCT--------------
i caeJap4.Scaffold4951 I 77 I 201

a score=9030.000000
s ce10.chrX             2116805 217 + 17718866 TTGTCCGTTTCC-AATGGA----------TCTCCTTGTCCCCTCCGCCAA-GAAAGACTATCCC----ATACATCTCAACAACGGTC-GTGT----ATGCCGTCG---TTGCATTGTCTT----GGCCGGAGTATTCGTGAAAAGTGAAATG-CCTCAGAATATGTATAAGC--------AAGAATAAAGTC-------------TACTAGAGGAC---------ACAAAT---AA--------TTGATTTGAGATTGATATCAAG---------------AAAAGATAAAATCTATTGAGT
s cb4.chrX             13596745 241 - 21540570 TTTTTGGGATCTCAATAAATCGCTTTTTGTCTCCTCATTCA--CCGCCAA-CGAAGATTACTCC----CCCC------ACCACCATAAATTTCGTAATGCCGTGG--ATTTCTTTGTCTG------------TGCCAAAGAAAAGTGAAATGGAAGAAAGAGATGTCTGtacggaaaattgaaaatacagAGAGGGGCTAAGAATAGTGGGAGGAG-----------AAACAAAA---------TGTATTCCAGGAACTGAAGCAA-----AAAGAATCTGACACGATAA--------GAA-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4367589 219 +  4500979 cttttcgtttctcattgga----------tcttcttATCC---CCGCCAA-CAAAGATCACCCC----CTACA---AAACGGCCCTCAATCGCGTAATGCCGTCG---TCTCTTTGTCTT----GACT---CTGCCAATGAAAAGTGAAATGCTTCAAGATAATGTTTACGC--------TAAAATAGAGTG-------------AACCAGACGag-----------aaat---a---------tttgtttcagaCAGGAAACCAGCTAACGAAAAAGCGAAATAGATAG--------Caat
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33071395 229 + 33334924 CGTTTCGTTCCT-AATGAA----------TCTTCTTATCCCCGCCGCCAAGAAAAGATTACCCTCCCACTACA---CAACTGCCCTC-ATCTCGTAATGCCGTCGCCGTCTCTTTGTCTTCACATACT---GTGCCAATGAAAAGTGAAACGGCGTTTGGGAATGCGTAAAGATATTGTCAAAAATAAAGTC-------------TACTTCAGATGAAAATATTTGCAAAC---A---------TGGATTCCAGACTTCA----------------------TTAGATAA--------CAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2870730 211 -  4147112 cttttcacttct-aATGAA----------TCTTTTTATC----CCGCCAAGAAAAGATTACCC-----CTACA---CAACGACGCTC-ATCTCAGAATGCCATGG-----TCTTTGTTTT----GACT---GTGccaagaaaaagtgaaac--tcttcggaagatttgaaaaagattctTTCAAATAAAGTC-------------TATTTGAGGga---------gcaaac---aattttttgttcggttCCAGACACGAA--------------------GATAGATAG--------TAAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    29568 201 +   152553 I

a score=174512.000000
s ce10.chrX             2117022 880 + 17718866  
s cb4.chrX             13596986 774 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4367808 833 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33071624 817 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2870941 816 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    29769 749 +   152553  
i caeJap4.Scaffold4951 I 201 I 835

a score=-358.000000
s ce10.chrX             2117902 5 + 17718866 GGTTC
s cb4.chrX             13597760 5 - 21540570 Cccat
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4368641 5 +  4500979 GGCAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33072441 5 + 33334924 GGACT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2871757 5 -  4147112 GGTCT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    30518 835 +   152553 I

a score=211572.000000
s ce10.chrX             2117907 469 + 17718866  
s cb4.chrX             13597765 539 - 21540570  
i cb4.chrX             C 0 I 937
s caeRem4.Crem_Contig0  4368646 456 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33072446 471 + 33334924  
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2871762 469 -  4147112  
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold4951    31353 453 +   152553  
i caeJap4.Scaffold4951 I 835 C 0

a score=-25375.000000
s ce10.chrX             2118376 95 + 17718866 CAGAATAATCTTCACATTTTTGAAAACGGATAATATAGAAAAATGGG------AATATTGAAGGAATCATGAAAGTATGAGATGGCGTAAAAAATAAACAA
s caeRem4.Crem_Contig0  4369102 36 +  4500979 GAGAATGACTTTCG-AGAATTGTTACTGTATTA--------GATG--------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33072921 80 + 33334924 gagaattgttt--------ttgttttgggtTTAC-------GGTGAG------AAATTGGAGCATGTGGAACAAATTTGTGGAGAGAGGGATTGTAGACGA
i caeSp111.Scaffold629 I 4 I 6
s caePb3.Scfld02_0      2872235 78 -  4147112 GCGAATTGCTT-------GTTGTTGTCGG------------GATGATTTATTCAAATTGGAGTAGGAAGAGGGTATTCGGGtgggaagaga----aaacaa
i caePb3.Scfld02_0     I 4 I 38
s caeJap4.Scaffold4951    31806 38 +   152553 -----------------------------------------------TTCACGTACTTCATATATATGTCCGAATTTCAAGGAAT----------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13598304 937 - 21540570 I

a score=-9240.000000
s ce10.chrX             2118471 60 + 17718866 TGTTACAGACTCAACTAT-TGATAATGACTTCTGGGAAACAATTTAATTGTTATCTATCTG
s caeRem4.Crem_Contig0  4369138 10 +  4500979 -----------------TGTGGGGATG----------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33073007 30 + 33334924 ------------AACTATAGAGCGATGCCTCGACATATACAG-------------------
i caeSp111.Scaffold629 I 6 C 0
s caeJap4.Scaffold4951    31844 10 +   152553 ---------------TGT-TTATAGT-----------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2872313 38 -  4147112 I
e cb4.chrX             13598304 937 - 21540570 I

a score=-70715.000000
s ce10.chrX             2118531 355 + 17718866 ATTAAAATGCAAGATACTCCCAGTTTACAGAAAGGAAAATAGGAGGAGTAA------------GAAAATTA-GACACTTATGTAGCTGTCACAAAATGTTTTCAAATTTTAAAAGAATAACGTGAACTATTTAGGCATAGTTATAACTATTTCTAAAGCCAAATAAAATTAAAACTAAATCCGCTGAAAACATTTGGGGTGCATCTACTACACAAGTACCGAAAAAAT-----CAAAG---AAAAAAGTAAAAATAAAAATGATTTCAGACATAGACTCCGCATGGTTAAACACAAAAATGGGTGTTTTCTAGATGAGATTTTTGATTTTATGGTGCACTCATCAGGTAATTCCTTTCTGAGATCGTGACAGTTGA
s caeRem4.Crem_Contig0  4369148 267 +  4500979 -------AGTAAAGC-----------------GGAGCATCAAGAAAAGTTACGGGCGCGGTGGGAAAATGGAGAACATGAAATGATTG------------AATTAacaacaagaagaaaatgagaattat---GACAAGATTAGAAC-ACTGAATTGCCAGATAAAAATTAAGACGGGAAACTATGAAATAACACG---------------ATGAGCACAGTAAGAAt-----taggtttaaaaaatatatattaaaaaatga-------------------------------gaagactTTTACATTTTAGGTTacatttt--------------attatttgaaagtttcgaaTATGAGCT----GCAGTAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33073037 136 + 33334924 ----AAAAACGAGAT-----------------TTTGAGATTAGAAGAATGAATGTTTCGACTTGAAAATAG-TTGTAATAATTGGTTT-------------TCTAATTAGGAGATCATAGAGGAAA--------------------------------------------------------------------TA---------------TTGAGTATCAAAAGTAT-----C-------AAAAAGCTgtatgaaatgag-----------------------------------------------------------------------------------aaaaa---------------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2872351 168 -  4147112 ATT-AAAAGTGAGct-----------------cgagagagagagagagaga------------gaaatcag-GACTTTCAGTTGATCT----GAAAT-TCAtctaagagagagagagaaaagggaa----------------------acagagttaacaaa--------aaaatgg-----------------tg---------------atGAGAAATAAAAGTATACTCCT-------GTAGAGATatacaagaagaaga-------------------------------aaaa---------------------------------------------caaaaa---------------------------
i caePb3.Scfld02_0     I 38 C 0
s caeJap4.Scaffold4951    31854 143 +   152553 -------------------------------------------------------------------------GTTTTCAGATGGTGt-----ggacatttcaaaatttcaaaatc--aataaaaattaat-----------------ctttgataataaaaattatattaaatttcaaCCTGGTgc-------ag---------------aaaagaaagaagaatat-----ttcaaaaaaaaaaaataaataaacaagaaa-------------------------------aata------------------------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13598304 937 - 21540570 I

a score=236284.000000
s ce10.chrX             2118886 476 + 17718866  
s cb4.chrX             13599241 513 - 21540570  
i cb4.chrX             I 937 C 0
s caeRem4.Crem_Contig0  4369415 488 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33073173 487 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2872519 499 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    31997 531 +   152553  
i caeJap4.Scaffold4951 C 0 I 27

a score=135.000000
s ce10.chrX             2119362 2 + 17718866 AA
s cb4.chrX             13599754 2 - 21540570 AA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4369903 2 +  4500979 CG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33073660 2 + 33334924 ga
i caeSp111.Scaffold629 C 0 I 34
s caePb3.Scfld02_0      2873018 2 -  4147112 aa
i caePb3.Scfld02_0     C 0 I 35
e caeJap4.Scaffold4951    32528 27 +   152553 I

a score=-103.000000
s ce10.chrX             2119364 4 + 17718866 GTTT
s cb4.chrX             13599756 4 - 21540570 TCTT
i cb4.chrX             C 0 I 25
s caeRem4.Crem_Contig0  4369905 4 +  4500979 Attg
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2873020 35 -  4147112 I
e caeJap4.Scaffold4951    32528 27 +   152553 I
e caeSp111.Scaffold629 33073662 34 + 33334924 I

a score=465.000000
s ce10.chrX             2119368 22 + 17718866 TTGCTTTGGAAATTGTTGGAAG
s caeRem4.Crem_Contig0  4369909 22 +  4500979 atcatctgaaaattactcCAAG
i caeRem4.Crem_Contig0 C 0 I 4
e caePb3.Scfld02_0      2873020 35 -  4147112 I
e caeJap4.Scaffold4951    32528 27 +   152553 I
e cb4.chrX             13599760 25 - 21540570 I
e caeSp111.Scaffold629 33073662 34 + 33334924 I

a score=0.000000
s ce10.chrX             2119390 497 + 17718866 GTGTAGTAGGATCAGCGAGAATGACTAAATACCATAGTAAAACTTTTGACAATTTTTTGAAATTTTTTATTTTGTTTCTAAAAGTGGTAACCACTCAGTTTTGCCATTttttgaaaaaactatagaactgttgtatgttggaatttctacaatgtatgaatatcagtatttgaaacataggtgtataaagaatgaaggaacactattttatttcgatctacgacttccaaaaaagtggcaaaaactgagatttgccaattttcaaaaaaataaaataaaattttgaatttgttaaactatatttcactagatttttggtaatgcttttaaaagtttccccgctggcgctacttcagctttaaAAGTTTGCTACTTATCGGGTTTGTTCTCCCAAAGATACATTTATGGCTAGATTAAAAGTTAAATTGGTATTCAAAAACTGGAAAATGTCAATTTCTTTTGTGGAAACGTGGACCCATAAATTCATAGTATTTAGA
e caePb3.Scfld02_0      2873020  35 -  4147112 I
e caeJap4.Scaffold4951    32528  27 +   152553 I
e cb4.chrX             13599760  25 - 21540570 I
e caeSp111.Scaffold629 33073662  34 + 33334924 I
e caeRem4.Crem_Contig0  4369931   4 +  4500979 I

a score=100.000000
s ce10.chrX             2119887 1 + 17718866 C
s caeJap4.Scaffold4951    32555 1 +   152553 C
i caeJap4.Scaffold4951 I 27 C 0
e caePb3.Scfld02_0      2873020 35 -  4147112 I
e cb4.chrX             13599760 25 - 21540570 I
e caeSp111.Scaffold629 33073662 34 + 33334924 I
e caeRem4.Crem_Contig0  4369931 4 +  4500979 I

a score=207.000000
s ce10.chrX             2119888 1 + 17718866 G
s cb4.chrX             13599785 1 - 21540570 g
i cb4.chrX             I 25 C 0
s caePb3.Scfld02_0      2873055 1 -  4147112 G
i caePb3.Scfld02_0     I 35 C 0
s caeJap4.Scaffold4951    32556 1 +   152553 A
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33073662 34 + 33334924 I
e caeRem4.Crem_Contig0  4369931 4 +  4500979 I

a score=78072.000000
s ce10.chrX             2119889 87 + 17718866 TACCCCTGGTTTCTCAACTTTTGCCTTTCCAGCAGACCGAACGAGCACCTTGTTTTGCACTTTGTTCAATGACGATTCCCACTAAAA
s cb4.chrX             13599786 84 - 21540570 tACCCCAGGTCTCT---GCTTGGCTTTACCAGTAGAGCGGACCAGAATTTTGTTTTGCACTTTGTTGAGTGACGTCTCccactgaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4369935 87 +  4500979 TACCCCTGGTTTCTCGACCCTCGCTTTGCCAGAAGAACGGACCATAATTCGGTTTTGAACTTTGTTCAGTGACGATTCCCACTAAAA
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33073696 87 + 33334924 TACCCCTGGCTTCTCCACTTTCGCTTTGCCAGACGATCGAACGAGCACTTTGTTTTGAACTCTGTTGAGTGACGATTCCcactgaaa
i caeSp111.Scaffold629 I 34 I 48
s caePb3.Scfld02_0      2873056 87 -  4147112 TACCCCTGGTTTCTCGACTTTGGCTTTGCCAGAAGATCGAACCAATACCTTGTTCTGCACTCTGTTCAGTGACGACTCCCACTGAAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    32557 87 +   152553 TACCCCTGGTTTATCAACTTTTGCTTTTCCAGAAGCACGTACCAATGTTTTGTTCTGCACTTTGTTAGACGACGATTCCCACTGAAA
i caeJap4.Scaffold4951 C 0 C 0

a score=-7048.000000
s ce10.chrX             2119976 18 + 17718866 ACTGGCTTT----TAAAACGTA
s cb4.chrX             13599870 14 - 21540570 --------ttcaaaaaaacatg
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4370022 12 +  4500979 --------T--AACAAATCTTA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2873143  9 -  4147112 -------------TACATTCTA
i caePb3.Scfld02_0     C 0 I 50
s caeJap4.Scaffold4951    32644  2 +   152553 ----------------AT----
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33073783 48 + 33334924 I

a score=-5343.000000
s ce10.chrX             2119994 26 + 17718866 CACGAA-AATCGAAAGATGAGAAA------AAA
s cb4.chrX             13599884 33 - 21540570 gaTTCGTCATAGTTTTAAAAGTGATCTCTCTGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4370034 33 +  4500979 CTCTAAGGATTAGAATAGGAGAGATTAGACAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951    32646 23 +   152553 ----GAACAATAAAACAACAGTAATTA------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2873152 50 -  4147112 I
e caeSp111.Scaffold629 33073783 48 + 33334924 I

a score=-2705.000000
s ce10.chrX             2120020 12 + 17718866 ACTAAAAAAGGA-
s cb4.chrX             13599917  9 - 21540570 ACG---CAAAGA-
i cb4.chrX             C 0 I 9
s caeRem4.Crem_Contig0  4370067 12 +  4500979 ATGTCTCAAGGA-
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold629 33073831 12 + 33334924 ATTCCTAGAGGG-
i caeSp111.Scaffold629 I 48 C 0
s caeJap4.Scaffold4951    32669 12 +   152553 -AGTCATAAGGTG
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2873152 50 -  4147112 I

a score=143261.000000
s ce10.chrX             2120032 239 + 17718866 CACGCACCGA----TATAAGTACA-GAAGGGGTCGACTGTTTCCGTCGACCATCATTCTTCTAAG-AAT-------------------TTCACGTTTCTACATGCAATTTACAT-----AAAGCTTACTACAAACGC---CTTTGGCTCTTCCTCTGTTGTTTGATTGAAAGATGCCAGAGAGCACACGAACATCACCGCCGTGACACCTTCGAAGAAGTGGATCCATTTGCGACGCTCGGTTTTTTGGCCACCCACGTCAATAAGACTGAA
s cb4.chrX             13599935 247 - 21540570 CTCTCACCCACCGATACAAGTACA-GTAGGGGTCGACTGTTTCCGTCGACCGTCTCCCTTCTAAGAAAA-------------------TATTCAGTA-CGCGT---TCCCA-GTTTATGTTAGCTCACCGCAAATGCGTTGTTCGGCTCCTGTTCCGTGGCCTGGTTGAACGAAGACAACGAGCAGACAAACATGACGGCGGTGACGCCCTCGAAGAAGTGAATCCATTTTCGGCGCTCCGTTTTTTGACCTCCCACGTCGATGagactgaa
i cb4.chrX             I 9 I 20
s caeRem4.Crem_Contig0  4370081 241 +  4500979 CACATACCGA-TGATACAAGAACA-GCAGGTATCGACTGTTTTCGTAGACCGTTTCCCTCCTGAGAAAC-------------------TCTTCATTT-TACATGCATCCCA-GC-----CTAGCTTACCACAAAAGA---TTTTGGCTCTTCCTCGGTCGTTTGGTTGAACGAAGCCAACGAGCATGTGAACATGACCGCGGTAACTCCCTCGAAGAAGTGAATCCATTTACGACGTTCGGTTTTTTGACCCCCAACATCGATGAGACTGAA
i caeRem4.Crem_Contig0 I 2 I 32
s caeSp111.Scaffold629 33073843 236 + 33334924 TACATACCGA----AACAACTACA-GTAGGGGTCGACTGTTTCTGTCGACTGTCACCCTTCTGAC-AAC-------------------TTTGGATTT-TGCATGCACAAT--TT-----CAAGCTTACCACAAATGA---TTTTGGCTCTTCCTCAACAGTCTGATTGAACGACGCCATTGAGCAAATGAAGATAACTGCAGTGACACcttcgaagaaatgaatcCACTTGCGACGTTCTGTCTTCTGACCACCCACATCGATAAGTCTAAA
i caeSp111.Scaffold629 C 0 I 15
s caePb3.Scfld02_0      2873202 234 -  4147112 CACATACCAA-------TACTATA-GTAGGGATCGACTGTTTCCGCCGACCGTCACCCATCTGAG-AAT-------------------TTCAGATCT-TACATGCAAACCA-CC-----CTAGCTTACCACAAACGA---CTTTGGCTCCTCTTCAGTGGTTTGATTGAATGATGACATGGAACAAACAAACATCACTGCAGTGACTCCTTCGAAGAAGTGGATCCATTTACGACGCTCAGTTTTCTGGCCACCCACGTCGATCAGTCTAAA
i caePb3.Scfld02_0     I 50 I 11
s caeJap4.Scaffold4951    32681 233 +   152553 --------------------TGCATAAAGAGATTTACTTTCttttgaaa--------cttttaaa-aGCGGTTTAACGCGAGGTGTGATGTtcataa-aacatgctctaca-GT-----TTATCTTACCACAATCGA---CTTTGACTCTTCTTCAGACGTCTGATTGAAGGAAGCTAGGGAACAAACAAACATCACTGCCGTAACACCTTCAAAGAAGTGAATCCATTTTCGACGTTCAGTCTTCTGGCCTCCAACGTCGATTaacctgaa
i caeJap4.Scaffold4951 C 0 C 0

a score=-9654.000000
s ce10.chrX             2120271 46 + 17718866 GAATAAAATT----AAATTAAATTTCAAGAATTTTTTAACAACTTCTTTA--
s cb4.chrX             13600202 10 - 21540570 CTAAGAAATT------------------------------------------
i cb4.chrX             I 20 C 0
s caeSp111.Scaffold629 33074094 18 + 33334924 GGGTGAGACT------------------GGATTTCT----------------
i caeSp111.Scaffold629 I 15 C 0
s caePb3.Scfld02_0      2873447 18 -  4147112 ccacaaaaat------------------gtgttttc----------------
i caePb3.Scfld02_0     I 11 C 0
s caeJap4.Scaffold4951    32914 38 +   152553 aattaaaatttttatcataAACTGActactattttt--------------aa
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4370322 32 +  4500979 I

a score=106678.000000
s ce10.chrX             2120317 142 + 17718866 ---AAACGTACCGAATAATGTGTTTCGTGTAGTCAAATGAAATTTCATGAACGCCAAGAGTAGTCTGTCTCATGTGAATCAGATCTTCGGCAGTAGGCACATAATTGGACGACGCAATTCTATCGAGATTTGGGTAGAAACTGAA
s cb4.chrX             13600212 141 - 21540570 ----AACGAACCGAATGGTTTGAGTCTGATAGTCGAACGAAATTTCATGAACTCCAAGAGTAGTCTGTCTCATATGAATTAGATCCTCGACCGTTGGCATATACTCGGAAATAGCAATGCGTTCCAAGTGGGGGAAGAAGCTGAA
i cb4.chrX             C 0 I 23
s caeRem4.Crem_Contig0  4370354 142 +  4500979 ---AAACCAACCGAATTGTATGTTTGGTATAGTCAAACGATATCTCATGAACTCCAAGAGTAGTTTGTCTCATGTGAATAATATCTTCCGGTGTTGGAATGTAGTTCGCAACCGCAATTCTGTCCAGGTTTggaaagaaactgaa
i caeRem4.Crem_Contig0 I 32 C 0
s caeSp111.Scaffold629 33074112 139 + 33334924 ------CCAACCTAATAGTGTGTTTagtgaaatcaaaagataTTTCATGAACTCCGAGAGTAGTCTGTCTCATATGGATAAGATCTTCCGTAGTTGGAATGTAGTTAGCTACAGCAATTCTTTCCAAGTTTGGGTAGAAACTGTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2873465 141 -  4147112 ----aacTGACCGAATGGTATGTTTGGTATAATCAAACGAGATTTCATGAACTCCAAGAGTAGTTTGTCTCATATGAATGAGATCCTCATTTGTTGGATAGTAATTGGCCACCGCGATTCTCTCCAAATTTGGGAAGAAACTGGA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    32952 145 +   152553 aatcgaattACCGAATTGTGTGACTAGTCATATCAAACGAAATTTCATGAACTCCGAGTGTCGTTTGTCTCATATGAATTAAATCTTCCTTCGTCGGAGTATAATTTGTGACCGCAATTCTCTCTAGGTTAGGAAAGAAGCTGGA
i caeJap4.Scaffold4951 C 0 C 0

a score=-1065.000000
s ce10.chrX             2120459 3 + 17718866 A---CA
s caeRem4.Crem_Contig0  4370496 6 +  4500979 atttca
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33074251 6 + 33334924 AATTCA
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2873606 3 -  4147112 A---CA
i caePb3.Scfld02_0     C 0 I 37
s caeJap4.Scaffold4951    33097 1 +   152553 -----A
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13600353 23 - 21540570 I

a score=-3308.000000
s ce10.chrX             2120462 22 + 17718866 -----------ACGTGCCTGATAACAAATCAAC
s caeRem4.Crem_Contig0  4370503 21 +  4500979 -----------attatcatacaatcaggt-gac
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33074259 22 + 33334924 -----------ATGATCCTCGTGTCATGTCGAC
i caeSp111.Scaffold629 I 2 C 0
s caeJap4.Scaffold4951    33098 28 +   152553 ATGTAATTTTTGGGCTAATAATAACAAA-----
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2873609 37 -  4147112 I
e cb4.chrX             13600353 23 - 21540570 I

a score=-5267.000000
s ce10.chrX             2120484 13 + 17718866 A-AGCTGTC---TAATC
s cb4.chrX             13600376 13 - 21540570 ATGGTTTCT---ACCT-
i cb4.chrX             I 23 C 0
s caeRem4.Crem_Contig0  4370524 11 +  4500979 --atttttt---tcat-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33074281  7 + 33334924 --AACTCTT--------
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    33126 15 +   152553 -TGGCTTTTGATACGT-
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2873609 37 -  4147112 I

a score=317266.000000
s ce10.chrX             2120497 597 + 17718866  
s cb4.chrX             13600389 585 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4370535 587 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 1254
s caeSp111.Scaffold629 33074288 587 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2873646 588 -  4147112  
i caePb3.Scfld02_0     I 37 C 0
s caeJap4.Scaffold4951    33141 598 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=678.000000
s ce10.chrX             2121094 4 + 17718866 ACAA
s cb4.chrX             13600974 4 - 21540570 ATAA
i cb4.chrX             C 0 I 1552
s caeSp111.Scaffold629 33074875 4 + 33334924 GAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2874234 4 -  4147112 agaa
i caePb3.Scfld02_0     C 0 I 1245
s caeJap4.Scaffold4951    33739 4 +   152553 agaa
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4371122 1254 +  4500979 I

a score=546.000000
s ce10.chrX             2121098 2 + 17718866 AA
s caeSp111.Scaffold629 33074879 2 + 33334924 AA
i caeSp111.Scaffold629 C 0 I 1642
s caeJap4.Scaffold4951    33743 2 +   152553 aa
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2874238 1245 -  4147112 I
e cb4.chrX             13600978 1552 - 21540570 I
e caeRem4.Crem_Contig0  4371122 1254 +  4500979 I

a score=182.000000
s ce10.chrX             2121100 2 + 17718866 AA
s caeJap4.Scaffold4951    33745 2 +   152553 aa
i caeJap4.Scaffold4951 C 0 I 1709
e caePb3.Scfld02_0      2874238 1245 -  4147112 I
e cb4.chrX             13600978 1552 - 21540570 I
e caeSp111.Scaffold629 33074881 1642 + 33334924 I
e caeRem4.Crem_Contig0  4371122 1254 +  4500979 I

a score=0.000000
s ce10.chrX             2121102 1184 + 17718866  
e caePb3.Scfld02_0      2874238 1245 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13600978 1552 - 21540570 I
e caeSp111.Scaffold629 33074881 1642 + 33334924 I
e caeRem4.Crem_Contig0  4371122 1254 +  4500979 I

a score=91.000000
s ce10.chrX             2122286 1 + 17718866 A
s caeRem4.Crem_Contig0  4372376 1 +  4500979 a
i caeRem4.Crem_Contig0 I 1254 C 0
e caePb3.Scfld02_0      2874238 1245 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13600978 1552 - 21540570 I
e caeSp111.Scaffold629 33074881 1642 + 33334924 I

a score=58.000000
s ce10.chrX             2122287 2 + 17718866 AT
s caeRem4.Crem_Contig0  4372377 2 +  4500979 GC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33076523 2 + 33334924 AT
i caeSp111.Scaffold629 I 1642 C 0
e caePb3.Scfld02_0      2874238 1245 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13600978 1552 - 21540570 I

a score=64922.000000
s ce10.chrX             2122289 177 + 17718866 TTATTGGGCTTAACGGAAGTCTG--TGCATTG-GCGATGCCGTGTTTG--TATATGTACGAGTACAAACGTTTAAG--ACACAGAAGCCGATA--TTTTGTATTATTAGTCTTTCTGTCATAATATTATTGTATTTTTCAAGGCTCTGAAAGTACAATT-GAACACCCAGCAAGACGCTGAAA-AACA
s cb4.chrX             13602530 176 - 21540570 TCAATAAGATTAACCAAAGTCTGGTTGCTTGGTGCGCTTCCGTGTTTG--TAGGTGTACGACTACATTT---CCAATCATTCCGGA-CAACCGTTTTTTGTATCATTAGTCTTTCTGtct--cgatttttgta-tttttaaggTTCTGCAAGTACAATGTGAAGA--TGgtaaaaaactcgaa-aaca
i cb4.chrX             I 1552 I 745
s caeRem4.Crem_Contig0  4372379 171 +  4500979 TCAATGAGGTTAACAGAAGTCTAA-GACTTCGAG---TTCCGTGTTTG--TAGGCGCACGAATACAATCG-ACAAGACACTCAGAA-CAGTTG--TTTTGTATCATTAGTC-TTCTGTCTAACTATTATTGTA-TTTTCAAGGCTCTGAAAGTACAATA-GAAGA--Cggc-aaaatctggaa-aaca
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33076525 171 + 33334924 TCAGTGAGGTTAATATCAGTCTA--TGCTCTGCGGGGTTCCGTGTT----TGTGTGTACGGATACAAAAG-ATAAG--ACTCAGAA-CAGTTG--TTTTGTATTATTAGTCTTTCTGTCTCGTGGTTATTGTA-TTTTCAAGGCTCTGGAAGTACAATG-ACAGA--CGgcaagaaataagaa-aaca
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2875483 175 -  4147112 TCAATGAGGTTAACAGATGTCTG--CGCGACATGAGGTTCCGTGTTTGTATGTGTGTACGAATACAAAAG-TTAAG--ACTCAGAA-CAGTCG--TTTTGTATCATTAGTC-TTCTGTCTCGTTGTTATTGTA-TTTCCAAGGCTCTGAAAGTACAATG-AAAGA--CGgcaagaaatttgaataaca
i caePb3.Scfld02_0     I 1245 C 0
e caeJap4.Scaffold4951    33747 1709 +   152553 I

a score=-1148.000000
s ce10.chrX             2122466 27 + 17718866 GAATGGCACG--------------ACGATTT--TGATAACGTC
s caeRem4.Crem_Contig0  4372550 30 +  4500979 -aattATACGGTCGACGA------ATG------TGATGGCGTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33076700 28 + 33334924 -----ATACGGTAGC---------GTGGGGTTCTGATGACGT-
i caeSp111.Scaffold629 I 4 C 0
s caePb3.Scfld02_0      2875658 38 -  4147112 -----atACAGTAGTCGATTTCTGACGGTTTCCTAATGACGTC
i caePb3.Scfld02_0     C 0 I 254
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13602706 745 - 21540570 I

a score=1342.000000
s ce10.chrX             2122493 11 + 17718866 ATCGAGGCGAA
s caeRem4.Crem_Contig0  4372580 11 +  4500979 ATCAGAATAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33076728 10 + 33334924 -TCAAGATGAA
i caeSp111.Scaffold629 C 0 I 369
e caePb3.Scfld02_0      2875696 254 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13602706 745 - 21540570 I

a score=404.000000
s ce10.chrX             2122504 60 + 17718866 CTTTTTAAAATTGCGCGCAAATTACGAA-------TACAATATTATACAAAAACACGTCAGCGCCAA
s caeRem4.Crem_Contig0  4372591 55 +  4500979 CCT------------CACATATCACGAAGAGCACCGAAAATACAATACCAGAAGATACCCACGTCAA
i caeRem4.Crem_Contig0 C 0 I 237
e caePb3.Scfld02_0      2875696 254 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13602706 745 - 21540570 I
e caeSp111.Scaffold629 33076738 369 + 33334924 I

a score=0.000000
s ce10.chrX             2122564 813 + 17718866  
e caePb3.Scfld02_0      2875696 254 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e cb4.chrX             13602706 745 - 21540570 I
e caeSp111.Scaffold629 33076738 369 + 33334924 I
e caeRem4.Crem_Contig0  4372646 237 +  4500979 I

a score=392.000000
s ce10.chrX             2123377 8 + 17718866 TTTTATAT
s cb4.chrX             13603451 8 - 21540570 TTTAATGT
i cb4.chrX             I 745 C 0
e caePb3.Scfld02_0      2875696 254 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e caeSp111.Scaffold629 33076738 369 + 33334924 I
e caeRem4.Crem_Contig0  4372646 237 +  4500979 I

a score=907.000000
s ce10.chrX             2123385 13 + 17718866 -TTTTGTTTCAACA
s cb4.chrX             13603459 14 - 21540570 TTTGAATGTAAAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4372883 13 +  4500979 -ttttttgtcaaca
i caeRem4.Crem_Contig0 I 237 C 0
e caePb3.Scfld02_0      2875696 254 -  4147112 I
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e caeSp111.Scaffold629 33076738 369 + 33334924 I

a score=5503.000000
s ce10.chrX             2123398 55 + 17718866 --ACCAATTTCACAGTATTTTTATGAAGCAATGGGAAAATGGGAAAAAGAAATACAA
s cb4.chrX             13603473 49 - 21540570 CATTtaaattctcagttttt--atgAAGCATGGg------tgcaaaaagaaaaacag
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4372896 43 +  4500979 ATTCAAAAGTCACAGTATTT--ATCAAGcatggg----------aaaagaaaaac--
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0      2875950 45 -  4147112 --ACAAATGTCACAGTTTTTTATCAAAGCAATGG----------GTGAGAAAAACAg
i caePb3.Scfld02_0     I 254 C 0
e caeJap4.Scaffold4951    33747 1709 +   152553 I
e caeSp111.Scaffold629 33076738 369 + 33334924 I

a score=-125.000000
s ce10.chrX             2123453 7 + 17718866 GGGGGAG
s cb4.chrX             13603522 7 - 21540570 gggatgg
i cb4.chrX             C 0 I 7
s caePb3.Scfld02_0      2875995 6 -  4147112 ggggtg-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    35456 7 +   152553 GAGAAAA
i caeJap4.Scaffold4951 I 1709 C 0
e caeSp111.Scaffold629 33076738 369 + 33334924 I
e caeRem4.Crem_Contig0  4372939 1 +  4500979 I

a score=232349.000000
s ce10.chrX             2123460 719 + 17718866  
s cb4.chrX             13603536 817 - 21540570  
i cb4.chrX             I 7 C 0
s caeRem4.Crem_Contig0  4372940 692 +  4500979  
i caeRem4.Crem_Contig0 I 1 I 3
s caeSp111.Scaffold629 33077107 745 + 33334924  
i caeSp111.Scaffold629 I 369 C 0
s caePb3.Scfld02_0      2876001 706 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    35463 669 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=7040.000000
s ce10.chrX             2124179 12 + 17718866 ATCACCCTAAAA
s cb4.chrX             13604353 12 - 21540570 ATCCCCCTGAaa
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold629 33077852 12 + 33334924 ATCACccttaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2876707 12 -  4147112 GTCACCCTGAAA
i caePb3.Scfld02_0     C 0 I 25
s caeJap4.Scaffold4951    36132 12 +   152553 gtcaatctaaaA
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=273.000000
s ce10.chrX             2124191 1 + 17718866 A
s caeSp111.Scaffold629 33077864 1 + 33334924 a
i caeSp111.Scaffold629 C 0 I 32
s caeJap4.Scaffold4951    36144 1 +   152553 A
i caeJap4.Scaffold4951 C 0 I 56
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e cb4.chrX             13604365 1 - 21540570 I
e caeRem4.Crem_Contig0  4373632 3 +  4500979 I

a score=97.000000
s ce10.chrX             2124192 6 + 17718866 CACATT
s cb4.chrX             13604366 6 - 21540570 tatatg
i cb4.chrX             I 1 I 69
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e caeJap4.Scaffold4951    36145 56 +   152553 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632 3 +  4500979 I

a score=0.000000
s ce10.chrX             2124198 79 + 17718866 TAGAAACATACTTCAAAATCAGACTAGTGCGGCAAACTCCAATTTTAGAAATGTATAGTAATATTTGTTATTTTTGAAA
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e caeJap4.Scaffold4951    36145 56 +   152553 I
e cb4.chrX             13604372 69 - 21540570 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=1535.000000
s ce10.chrX             2124277 65 + 17718866 AAAATTACTTCTATCGGAAAATGTTGAAATTTTTTTTAAAACTGCTACAAACCGGGGCTGTGCGG
s cb4.chrX             13604441 57 - 21540570 AAACTTATATATGACCGAATATATTGAattttattacaaaa--------aatcggagctgtggaa
i cb4.chrX             I 69 I 19
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e caeJap4.Scaffold4951    36145 56 +   152553 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=0.000000
s ce10.chrX             2124342 26 + 17718866 CTCTCGGCTGTCGGCGTCAGGCGTCA
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e caeJap4.Scaffold4951    36145 56 +   152553 I
e cb4.chrX             13604498 19 - 21540570 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=1089.000000
s ce10.chrX             2124368 26 + 17718866 GCCGACAG--CCGAGAAAAAAATTACCA
s cb4.chrX             13604517 28 - 21540570 GCTGAAAGTTCCACgaaaaaaactaccg
i cb4.chrX             I 19 I 622
e caePb3.Scfld02_0      2876719 25 -  4147112 I
e caeJap4.Scaffold4951    36145 56 +   152553 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=0.000000
s ce10.chrX             2124394 588 + 17718866  
e caePb3.Scfld02_0      2876719  25 -  4147112 I
e caeJap4.Scaffold4951    36145  56 +   152553 I
e cb4.chrX             13604545 622 - 21540570 I
e caeSp111.Scaffold629 33077865  32 + 33334924 I
e caeRem4.Crem_Contig0  4373632   3 +  4500979 I

a score=436.000000
s ce10.chrX             2124982 13 + 17718866 TTATCTCTTCTCA
s caePb3.Scfld02_0      2876744 12 -  4147112 ttattttttctc-
i caePb3.Scfld02_0     I 25 C 0
e caeJap4.Scaffold4951    36145 56 +   152553 I
e cb4.chrX             13604545 622 - 21540570 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632  3 +  4500979 I

a score=0.000000
s ce10.chrX             2124995 1 + 17718866 A
e caePb3.Scfld02_0      2876756 0 -  4147112 C
e caeJap4.Scaffold4951    36145 56 +   152553 I
e cb4.chrX             13604545 622 - 21540570 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632 3 +  4500979 I

a score=242.000000
s ce10.chrX             2124996 4 + 17718866 AATC
s caeJap4.Scaffold4951    36201 4 +   152553 AATT
i caeJap4.Scaffold4951 I 56 C 0
e caePb3.Scfld02_0      2876756 0 -  4147112 C
e cb4.chrX             13604545 622 - 21540570 I
e caeSp111.Scaffold629 33077865 32 + 33334924 I
e caeRem4.Crem_Contig0  4373632 3 +  4500979 I

a score=1816.000000
s ce10.chrX             2125000 3 + 17718866 ACT
s cb4.chrX             13605167 3 - 21540570 ACT
i cb4.chrX             I 622 I 3
s caeSp111.Scaffold629 33077897 3 + 33334924 ACT
i caeSp111.Scaffold629 I 32 C 0
s caePb3.Scfld02_0      2876756 1 -  4147112 --t
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    36205 3 +   152553 ACT
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4373632 3 +  4500979 I

a score=116732.000000
s ce10.chrX             2125003 169 + 17718866 TACTGTTGGAGGTCCATGATTGGCATCATCATTGAGGGCTGCTCCGAAAATCATCAGAACCACAATAAGAATTGCCAATGTGATGATTTGCCCGCTGATTGTAAATGTCAAAAACAAGTTGGCAAGGTATTGATTCGAATACATCAGGCATCCGCCACTCTGAAA-CAAT
s cb4.chrX             13605173 169 - 21540570 CGGTGGGAGTACGTTATGAGACGCGTCATCATTAAGGACGTTACCGAAAATCATCAGAACCACAATCAAGATTCCCAATGTAATAACCTGTCCGCTGATTGTAAAAGTCAAGAAAAGATTCGCCAAATATTGATTCGAATACATCAGACATCCGCCACTCTGAAA-ATAT
i cb4.chrX             I 3 C 0
s caeRem4.Crem_Contig0  4373635 170 +  4500979 TAATGGAGGTGCTCCAAGATGTGCATCATCGTTAAGCGTCGCTCCGAAAATCATTAAGACCACAATGAGGATAGCTAAAGTGATGATCTGGCCACTGATAGTGAAGGTGAGGAAGAGATTGGCAAGATACTGGTTTGAGTACATTAGGCATCCACCGCTCTAAAAGAAAT
i caeRem4.Crem_Contig0 I 3 C 0
s caeSp111.Scaffold629 33077900 169 + 33334924 AACCGGAGGTGCACCATGATTGGCATCATCGTTGAGAGTAGCTCCGAAAATCATCAGCACCACGATCAAAATTGCCAATGTGATGATTTGACCGCTAATTGTGAAGGTTAAGAAAAGGTTGGCAAGATACTGGTTTGAATACATCAAACAACTTCCACTCTGTAA-TGAT
i caeSp111.Scaffold629 C 0 I 34
s caePb3.Scfld02_0      2876757 169 -  4147112 caccgCTGCGGGTCCATGGTTAGCATCGTCATTCAAAGTGGCTCCAAATATCATCAACACCACGAGGAGAATCGCCAGAGTGATTATCTGACCACTTATTGTAAACGTTAAGAAGAGGTTGGCAAGGTACTGGTTGGAATACATCAAACAACTACCACTCTGTAA-TAAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    36208 169 +   152553 TACAGGTGGCACAGTCGGGTTAGTGTCATCATTTAACGTTCCACCGTAGATCATAAGAACCACAAGAAGAATTGCAAGAGTGATGACTTGACCACTAATTGTAAACGTCATAAAAAGGTTGGCAAGTAGCTGGTTGGAGTACATTAAGCATTCGCTGCtctaaaa-tgac
i caeJap4.Scaffold4951 C 0 C 0

a score=-12661.000000
s ce10.chrX             2125172 36 + 17718866 ------CAATTGTTAGTTCAGAAAATGGAATCTGAAGT------TTGT
s cb4.chrX             13605342 37 - 21540570 ---------CGGATCTTtcaagacaatttttttgaattatcttaTT--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4373805 34 +  4500979 ---------AGCTTGTTTCCCGACAATTGGTAGGCACTAGC---TT--
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2876926 35 -  4147112 ----------GGTCATTTCAACATGAATTGTGTG-ACTATAATTTT--
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    36377 38 +   152553 aaaattagcACATTTTTCTCTCAAGCTGTGAATAAAGT----------
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33078069 34 + 33334924 I

a score=255252.000000
s ce10.chrX             2125208 390 + 17718866 ACCGAGCTTCCACAAGAGTCCGATTGATACTTTATACACGAGACATCGAACATCCATCCAAAAAGAACTGGCGCAGGAATCGTACCAATCACTCTGATCATGATCCACTGAATTCCCAATGCAAATGATCGCTCGTTGTAATCGACAGTTCTCAGGATGACAGAGATGATCGGAACAGCAATTGCGAACGTACAGAAGGAAAGTGGTGCGAAGAGCAGAAGGAACCAAAGCAATTCAGTGCACTGTGGCTCGCAAACACCTTTTTTCACAATACGTGGTCGGTTTTTAGTATTCGTCGGCACGCAACTGCATTCGGTGTACTCCTGAAAATATAAT----ATTATCAATGTGATTTAAAATTGGAGGATTTaaaggattaaaagacaattcgtt
s cb4.chrX             13605379 347 - 21540570 ACCGAGTCTCCACACGAGTCGGTTTGGTACTTGATACACGAGACATCAAACATCCATCCAAATAAAACTGGAGCAGGAATCGTGCCAATGACTCTAATCATAATCCACTGGATACCAAGTGCAAACGAGCGCTCATTGTAGTCGACAGTCCTCAGAATAACCGAAATGATTGGCACTGCAACGGCAAACGTGCAGAAAGAGAGTGGTGCGAAGAGGAGAAGGAACCAGAGGAGTTCAGTGCACTGAGGCTCACAAACGCCTTTCTTAACAATTCGAGGATGGTTTTTAGTGTTGTTTGGCACACAACTGCATTGGGTGTATTCCTGAAAACA-------------------------------AACGATTTGAAGGGT----------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4373839 358 +  4500979 ACCGAGCTTCCACAAGAATCAGATTGATATTTGATGCAAGAGACATCGAACATCCATCCAAACACCACTGGAGCTGGGATGGTTCCAATCACTCTGATCATGATCCACTGAATACCCAGGGCAAATGACCTCTCATTATAGTCAACTGTTCTCAGAATGACTGAGATGATAGGTACGGCAACGGCGAAGGTACAGAAAGAGAGTGGTGCGAACAGCAAGAGGAACCATAATAGTTCAGTACACTGTGGTTCGCATACTCCTTTCTTGACAATCCTTGGATGGTTTTTCGTGTTATTTGGAACGCAGGTACACTGGGTGTACTCCTGaaagtata-----------------tattt----tttgataaattgtaAAATC---------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33078103 339 + 33334924 ACCGAGCTTCCGCAAGAATCTGATTGGTACTTGATACAAGAGACGTCAAACATCCATCCAAAAAGCACTGGAGCTGGAATGGTTCCTATTACTCTGATCATGATCCATTGAATTCCCAAGGCAAACGAGCGCTCATTATAATCCACAGTTCtcaaaataactgaaatGATTGGAACGGCCACTGCGAATGTGCAGAAAGATAGTGGTGCAAACAACAATAGGAACCACAGAAGTTCTGTGCATTGAGGTTCGCAGACGCCTTTCTTCACAATTCTTGGCCGATTCTTAGTGTTTGTTGGAACACAACTGCATTCAGTATACTCCTGTAATAA-------------------------------ATTCATT------------------------
i caeSp111.Scaffold629 I 34 I 22
s caePb3.Scfld02_0      2876961 263 -  4147112 ACCGAGCTTCCACACGAATCAGATTGATACTTTATACATGAAACATCAAACATCCATCCGAATAGCACAGGAGCTGGGATTGTTCCGATGACTCTGATCATAATCCATTGAATTCCCAGAGCAAAAGAACGCTCATTGTAATCAACTGTTCTTAGAATAACTGAAATGATTGGAACAGCAACAGCAAATGTGCAGAAAGAGAGTGGTGCAAACAACAGAAGGAACCAGAGAAGCTCGGTACACTGAGGCTCGCAAACTCCTTT-----------------------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold4951    36415 356 +   152553 ACCGAGCTGCCACAAGAATCGGATTGGTATTTGATGCAGGAAACATCAAACATCCATCCAAACAGAACGGGAGCTGGAATGGTTCCTATCACTCGGATCATAATCCATTGGATTCCAAGGGCAAAAGATCGCTCGTTGTAGTCAACAGTTCTCAAAATGACTGAAATGATTGGAACAGCAACAGCAAATGTGCAAAAAGACAGTGGAGCAAAGAAGAGCAAGAAGCCAAGAAGTTCCGTGCATTGCGGCTCGCAAACTCCTCTTTTCACAATTCTCGGCCTTTGTTTAGTGATTGTTGGAACACAACTGCATTCGGTGTATTcctaaacaaatttttttcgttgttttttttcgtt--------------------------------------
i caeJap4.Scaffold4951 C 0 C 0

a score=45.000000
s ce10.chrX             2125598 5 + 17718866 cttca
s caeJap4.Scaffold4951    36771 5 +   152553 cataA
i caeJap4.Scaffold4951 C 0 I 244
e caePb3.Scfld02_0      2877224 5 -  4147112 I
e cb4.chrX             13605726 0 - 21540570 C
e caeSp111.Scaffold629 33078442 22 + 33334924 I
e caeRem4.Crem_Contig0  4374197 0 +  4500979 C

a score=-549.000000
s ce10.chrX             2125603 35 + 17718866 agcgctatgcactgcgggactgggagttagccaca
s caeRem4.Crem_Contig0  4374197  5 +  4500979 ------------------------------TCACA
i caeRem4.Crem_Contig0 C 0 I 1
e caePb3.Scfld02_0      2877224  5 -  4147112 I
e caeJap4.Scaffold4951    36776 244 +   152553 I
e cb4.chrX             13605726  0 - 21540570 C
e caeSp111.Scaffold629 33078442 22 + 33334924 I

a score=-1566.000000
s ce10.chrX             2125638 68 + 17718866 ctgcatggtggcgctcccactgggctataatttaagctacgttccagccggtgactgtggccgataat
s cb4.chrX             13605726  7 - 21540570 ------------------------------------CTACGTT-------------------------
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2877224  5 -  4147112 I
e caeJap4.Scaffold4951    36776 244 +   152553 I
e caeSp111.Scaffold629 33078442 22 + 33334924 I
e caeRem4.Crem_Contig0  4374202  1 +  4500979 I

a score=-2570.000000
s ce10.chrX             2125706 42 + 17718866 ccattcgtggattgctgcacttctcaatagagactgggttta
s cb4.chrX             13605733 13 - 21540570 --TTCTTTGGGT-----------TCA----------------
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2877229 11 -  4147112 CTATCCGTGGa-------------------------------
i caePb3.Scfld02_0     I 5 C 0
e caeJap4.Scaffold4951    36776 244 +   152553 I
e caeSp111.Scaffold629 33078442 22 + 33334924 I
e caeRem4.Crem_Contig0  4374202  1 +  4500979 I

a score=-1939.000000
s ce10.chrX             2125748 114 + 17718866 atctaggcggtgagaccggacttgaactcgggacctccagattgctagcgatcaccattaccgactgatccatcCCGCCATCCCGCTTACTGCTAGTTTTATGTTGTATCTTTT
s caePb3.Scfld02_0      2877240  43 -  4147112 ------------------------------------------------cgattttttgtgttggcTGGTACACACGTACATTCAGTGTACT-----------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    36776 244 +   152553 I
e cb4.chrX             13605746   0 - 21540570 C
e caeSp111.Scaffold629 33078442  22 + 33334924 I
e caeRem4.Crem_Contig0  4374202   1 +  4500979 I

a score=0.000000
s ce10.chrX             2125862 1 + 17718866 A
e caePb3.Scfld02_0      2877283 0 -  4147112 C
e caeJap4.Scaffold4951    36776 244 +   152553 I
e cb4.chrX             13605746 0 - 21540570 C
e caeSp111.Scaffold629 33078442 22 + 33334924 I
e caeRem4.Crem_Contig0  4374202 1 +  4500979 I

a score=391.000000
s ce10.chrX             2125863 4 + 17718866 AAAC
s caeRem4.Crem_Contig0  4374203 4 +  4500979 AAGC
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33078464 2 + 33334924 --ac
i caeSp111.Scaffold629 I 22 C 0
e caePb3.Scfld02_0      2877283 0 -  4147112 C
e caeJap4.Scaffold4951    36776 244 +   152553 I
e cb4.chrX             13605746 0 - 21540570 C

a score=-716.000000
s ce10.chrX             2125867 3 + 17718866 TTA
s caeRem4.Crem_Contig0  4374207 3 +  4500979 AAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33078466 3 + 33334924 aat
i caeSp111.Scaffold629 C 0 I 2
s caeJap4.Scaffold4951    37020 3 +   152553 TTA
i caeJap4.Scaffold4951 I 244 C 0
e caePb3.Scfld02_0      2877283 0 -  4147112 C
e cb4.chrX             13605746 0 - 21540570 C

a score=1116034.000000
s ce10.chrX             2125870 2239 + 17718866  
s cb4.chrX             13605746 1964 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4374210 2053 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 38
s caeSp111.Scaffold629 33078471 1957 + 33334924  
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0      2877283 2071 -  4147112  
i caePb3.Scfld02_0     C 0 I 179
s caeJap4.Scaffold4951    37023 2121 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=146.000000
s ce10.chrX             2128109 3 + 17718866 TTA
s cb4.chrX             13607710 3 - 21540570 gga
i cb4.chrX             C 0 I 150
s caeSp111.Scaffold629 33080428 3 + 33334924 TAA
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    39144 3 +   152553 TAA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879354 179 -  4147112 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=1284.000000
s ce10.chrX             2128112 7 + 17718866 TTTATTG
s caeSp111.Scaffold629 33080431 7 + 33334924 TTTATTG
i caeSp111.Scaffold629 C 0 I 31
s caeJap4.Scaffold4951    39147 7 +   152553 CTGAttg
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879354 179 -  4147112 I
e cb4.chrX             13607713 150 - 21540570 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=1284.000000
s ce10.chrX             2128119 23 + 17718866 ---TTGTTTTTTTGGTTTCTTAAGtt
s caeJap4.Scaffold4951    39154 26 +   152553 tgcttgttttttttttgttttaagtT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879354 179 -  4147112 I
e cb4.chrX             13607713 150 - 21540570 I
e caeSp111.Scaffold629 33080438 31 + 33334924 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=0.000000
s ce10.chrX             2128142 204 + 17718866 ttttggcttttttggatttttaagcctttttggctatttaggcttgttaggctttttaggctttttaggctttttaggcatttctagacctttttaggTTACCAAAAAATTCCCAAAATGGTTAATGTTTTTCGACTAGGTATACTTTACATATAACCTTTTTTATATTTGTCTAGTTTTTTTTGCACAGTTATTTGAAAATTC
e caePb3.Scfld02_0      2879354 179 -  4147112 I
e caeJap4.Scaffold4951    39180   0 +   152553 C
e cb4.chrX             13607713 150 - 21540570 I
e caeSp111.Scaffold629 33080438  31 + 33334924 I
e caeRem4.Crem_Contig0  4376263  38 +  4500979 I

a score=243.000000
s ce10.chrX             2128346 28 + 17718866 AAATAGGAATGTAAAGAAAATATGTAAT
s caePb3.Scfld02_0      2879533 25 -  4147112 aaataaaaatat-acgAAAACAAACA--
i caePb3.Scfld02_0     I 179 C 0
e caeJap4.Scaffold4951    39180  0 +   152553 C
e cb4.chrX             13607713 150 - 21540570 I
e caeSp111.Scaffold629 33080438 31 + 33334924 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=817.000000
s ce10.chrX             2128374 41 + 17718866 TGCTTTCAGCCGAA-AATTTCGAAAAGTTGCTCAAAAAGTGA
s cb4.chrX             13607863 42 - 21540570 TCTTTTGAGCCAATCAATTTCgagaaattacaaaaatattta
i cb4.chrX             I 150 I 103
s caePb3.Scfld02_0      2879558 29 -  4147112 -------AGCCTAATGGTTCCAA------ACTTGAAAGTTGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    39180  0 +   152553 C
e caeSp111.Scaffold629 33080438 31 + 33334924 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=-2732.000000
s ce10.chrX             2128415 103 + 17718866 GGTATTAATATAGTTGCTAGAGATCCTGAATAACTATCTCAAATCTACAGTCGAATAAGTTCTTTTTTGGATTTTGATAAACTAAACTACTACTAATAGTTTT
s caePb3.Scfld02_0      2879587  22 -  4147112 AGACCT-----------------TTCAGAATATCTGTAT----------------------------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    39180   0 +   152553 C
e cb4.chrX             13607905 103 - 21540570 I
e caeSp111.Scaffold629 33080438  31 + 33334924 I
e caeRem4.Crem_Contig0  4376263  38 +  4500979 I

a score=0.000000
s ce10.chrX             2128518 3 + 17718866 TCG
e caePb3.Scfld02_0      2879609 0 -  4147112 C
e caeJap4.Scaffold4951    39180 0 +   152553 C
e cb4.chrX             13607905 103 - 21540570 I
e caeSp111.Scaffold629 33080438 31 + 33334924 I
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=964.000000
s ce10.chrX             2128521 5 + 17718866 AACAA
s cb4.chrX             13608008 5 - 21540570 AACTA
i cb4.chrX             I 103 C 0
s caeSp111.Scaffold629 33080469 5 + 33334924 AACTA
i caeSp111.Scaffold629 I 31 C 0
e caePb3.Scfld02_0      2879609 0 -  4147112 C
e caeJap4.Scaffold4951    39180 0 +   152553 C
e caeRem4.Crem_Contig0  4376263 38 +  4500979 I

a score=144765.000000
s ce10.chrX             2128526 159 + 17718866 ACCTGTATACTACAGTAAACACATAACAGAACAATCATTGGAAGCTGCTTGCCCAGACACTGAAGCCATTTGGGCCTCCACTTGCCAATTCCGCACTGTGACTCCTCGGTCAGAACCGTCATTTCCCGTTCAATCAACTCGTGTTGTTGTGGCTGAAAA
s cb4.chrX             13608013 159 - 21540570 ACCTGTATACTACAGTAAACACACAAGAGCACGATCATTGGCAACTGCTTGCCCAACCACTGCAACCATCTCGGTCTGTACTTGCCCAGTCCACACTGGGACTCCTCAGTCAGAACCGTCATCTCACGCTCGATCAGCTCGTGTTGTTGTGCCTAGAAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4376301 159 +  4500979 ACCTGTATACTACAGTATACACAGAGCAAGACAATCATCGGAAACTGTTTTCCAAGCCATTGTAACCATCGCGGTCGGTACTTGCCAATTCCACATTGAGATTCTTCAGTGAGAACCGTCATTTCTCGTTCGATAATTTCGTGTTGTTGAGGctgaaat
i caeRem4.Crem_Contig0 I 38 C 0
s caeSp111.Scaffold629 33080474 159 + 33334924 ACCTGGATACTGCAATAAACACATAACAAAACGATCATAGGCAGCTGTTTTCCAAGCCACTGCAACCATTTGGGCCTCCATTTACCGATTCCACACTGAGATTCCTCAGTGAGAACCGTCATTTCACGCTCAATCAGCTCGTGTTGTTGAGGCTGAAAA
i caeSp111.Scaffold629 C 0 I 262
s caePb3.Scfld02_0      2879609 159 -  4147112 ACCTGTATACTGCAATAAACACATAGCAGAACAATCATTGGCAGTTGATTCCCTAGCCATTGTAACCACTTCGGCCTCCATTTACCAATACCACATTGTGACTCTTCCGTAAGAACTGTCATTTCACGTTCTATCATCTCGTGCTGCTGAGGCTGGAAA
i caePb3.Scfld02_0     C 0 I 263
s caeJap4.Scaffold4951    39180 159 +   152553 ACCTGAATACTGCAATAAATACAAAGGAGGACTATCATTGGTAGTTTTTTCCCCAACCATTGCAACCATCTAGGCCTCCAACTACCCAGTCCACACTGTGATTCTTCTGTGAGTACTGTCATTTCTCGTTCGATCAGCTCGTGTTGTTGTGGCTGaaaa
i caeJap4.Scaffold4951 C 0 C 0

a score=-5589.000000
s ce10.chrX             2128685 55 + 17718866 --ATTCATTTTTTGGAAGAATGA----------AAATAAATAATAAGAATGGGAATTTGTTATGAAG
s cb4.chrX             13608172 51 - 21540570 --------------GAGGAATGATCAAAATGATAGCTAACCGAT--AAACATGATGTGGGAATCAAT
i cb4.chrX             C 0 I 7
s caeRem4.Crem_Contig0  4376460 54 +  4500979 --atac--------aaaaaatagtATAAAGGA-AGATACATGAT--GAACGGGAGGTCAACATGAGG
i caeRem4.Crem_Contig0 C 0 I 251
s caeJap4.Scaffold4951    39339 49 +   152553 aggtcggtttagtttaggattgataaaaagta-aactatttttt--aaagaa---------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e caeSp111.Scaffold629 33080633 262 + 33334924 I

a score=-396.000000
s ce10.chrX             2128740 56 + 17718866 AATTGTTGGATACCTACCAAAATGGTTACACCTAGTT---CCATTCTTG--------TAAAACGAGG
s cb4.chrX             13608230 55 - 21540570 aaattttgaa-atggacCAATgtcgaaaaaacaaatt---tcatgatGA--------AAGAATGAgg
i cb4.chrX             I 7 I 293
s caeJap4.Scaffold4951    39388 58 +   152553 aatttttaaa---------aaatttaaaatttaaactcaACCATCCTGGTCACTAGCAAGAGCGAAG
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e caeSp111.Scaffold629 33080633 262 + 33334924 I
e caeRem4.Crem_Contig0  4376514 251 +  4500979 I

a score=-2369.000000
s ce10.chrX             2128796 347 + 17718866 AGATGACACATGTTTAGCCTGCCAGTTTCTCGAAATCGAAACTGTTTACAAATATGACACTATTCAAGGGAAAAAAATTGGGGAAGG-------GAACATATGACTCATCAC-TTTAAATAGTCGAATTTCAGCTGGAAAACAAAATTTTTGTGGAGCAACTCAAAATTACAACGATATTAAGTATTTACATATATGTTGAAGGAAAGAACGATTGGGTTTAGTTTCGAGGCGTCTGAACATTTTTATTGAATTAAAGTAAAGGT-TGACTTGTTTTTCCATTAAAAATATTTGTGATACAGTACTTTTTTATGCTTAGAAATAATTATTTCCTCAGCTTAAAAGTGCAAAAATAT
s caeJap4.Scaffold4951    39446 213 +   152553 AG-TGACGAA-------------------------------------------ATGACA----------------------GGAGGGTCTTACCGAAACTATGATTCTTTACGTTTAAAGAAT--------AGC--gatgacgcattttttttccagta---------------gATG------GTTTAtgcaaatattaaaaaaagaaaaga--------aattgaaaaccaaactaattctttagttaaattaagaaaaaCGCATGACT-------------AAACTGTTTATCCTCAAGTCTTATTTT----------------------TCAAGTTAAAA---CGAAAATGT
i caeJap4.Scaffold4951 C 0 I 126
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e cb4.chrX             13608285 293 - 21540570 I
e caeSp111.Scaffold629 33080633 262 + 33334924 I
e caeRem4.Crem_Contig0  4376514 251 +  4500979 I

a score=0.000000
s ce10.chrX             2129143 177 + 17718866 TCCACTCGTTGTTATtgtcagactgccccattacggtttgatctacaaaagatgcgaaatattttcccccaaaaaatgtgacgtcagcacgttcttaaccatgggaaaacagtagggaagtctgcgtctaaattcccgcgattcctagatcaaaccaaaatggaacgctctgacacc
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e caeJap4.Scaffold4951    39659 126 +   152553 I
e cb4.chrX             13608285 293 - 21540570 I
e caeSp111.Scaffold629 33080633 262 + 33334924 I
e caeRem4.Crem_Contig0  4376514 251 +  4500979 I

a score=30.000000
s ce10.chrX             2129320 136 + 17718866 aTTGGTGTTACAGAGATATGCAATAGAAAAATCATAACATAAAAATTAATTGTTTTCGAATATTTGGAAAAGTCTCATATAAACTCGTTTT-TTTGTATTGCTCATTTTGATTTTATAGTAACAAACACCAGAGCTG
s caeJap4.Scaffold4951    39785  94 +   152553 attagttatttaaaaata---------aaaataataatatgaaaa---------------------------------ataGCCTAGTTTTGCTTCTATGTCTTAAAGCAATTTT-TAGCCACCaactaaaaaatag
i caeJap4.Scaffold4951 I 126 C 0
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e cb4.chrX             13608285 293 - 21540570 I
e caeSp111.Scaffold629 33080633 262 + 33334924 I
e caeRem4.Crem_Contig0  4376514 251 +  4500979 I

a score=-1331.000000
s ce10.chrX             2129456 27 + 17718866 CTATTTTTCCCTTGATTGACGCTTAGA---------
s caeSp111.Scaffold629 33080895 27 + 33334924 ctcttttttaaacgattgaattccaaa---------
i caeSp111.Scaffold629 I 262 C 0
s caeJap4.Scaffold4951    39879 24 +   152553 ------------aaattaatggcaaaatttaattga
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2879768 263 -  4147112 I
e cb4.chrX             13608285 293 - 21540570 I
e caeRem4.Crem_Contig0  4376514 251 +  4500979 I

a score=-8376.000000
s ce10.chrX             2129483  74 + 17718866 AAAAAAGAGAAAATTCCTCATAATACACT--------------------------------TATACATTTGTATAACTGATTAAA---CCTCAATGTTGCTAATATGAG----
s caeRem4.Crem_Contig0  4376765  72 +  4500979 agaaaatagaaa---------agtgcCCCCGATAACctcatttgaagaaa-----------------------aaaccaattaa-----CCCAATGTTGCGAgcattct----
i caeRem4.Crem_Contig0 I 251 I 5
s caeSp111.Scaffold629 33080922 104 + 33334924 aaaagagacaaagttaATTATAGTTCATTGGACCATAGTATAAAAAAGGAGACGTGCTCTTTATACATCTTCAAAACCAATTAT-----CTCATATTCACcacttttct----
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2880031  95 -  4147112 aaaaaaggcAAAATTAATTATAGTTCATTCGACTATCATAAAAGAATAGAAAGAGTCCATTTTT---------AAACCAATTAA-----CCCGCTGTTGCCACTtttct----
i caePb3.Scfld02_0     I 263 I 4
s caeJap4.Scaffold4951    39903  48 +   152553 -------------------atgatttttc----------------------------------------------atcaattaagaatttttatgaatacaaatttgtttttt
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13608285 293 - 21540570 I

a score=87426.000000
s ce10.chrX             2129557 294 + 17718866 CTTTTTTGAGAACAATG--AATATCA---TGGAC---GATTCACAAAAGATGGATGCATAAAAAAAGA----AAATGGTTCTGG--------TTGCATGTGGAAGGGAGAGGCA--------GTGAGGAC------------------AATCAGTCTTCAAAACTGAGAAAAAGAAAGCGACTGTTCTCTGTC---------------------GACTTTTGCTCTGGTCACAAAAATTTGTTGGAATT-------CG-GAATAAACAAA-GAAAAACTTACTGGCAATTGGAATTCTTTCCGCCGCAACGCTTTCTCCATGTGTCGGGGTGGGACTCCTTGAGAAGCTTGCCGCATATGACTCCTGAAA
s cb4.chrX             13608578 337 - 21540570 ------CTATTTAAAAGACGATATCATCATAAAC---AAAACACAAAA----GATGCatgagaaaaggaagaaaatggtttttcgtCTTGTATTCTCCTAGTTAGG-ACTCTCAC-------ATGGGGGACGAACTCccggaaaaaagaggagggaATGAGAATTGGCAGAAAAAAGACAGTTTTCGCGAGTGCGAAAGGCGTGAAAAAAGc--gactttttttgctttccc---aaattccagaaaga-------agaaaataaactatgaaaaaactCACTGGCAATTGGAATTCTTTCCTTCGAAGTGCCTTCTCCATGTGGCGGGGTGGTACTCCTTGGGACGCCTGTCGCATGTggctcctgaaa
i cb4.chrX             I 293 I 1113
s caeRem4.Crem_Contig0  4376842 306 +  4500979 ------ttattcaaaag--gATATCATCataaac---aaaacacaaaa----gatgcatgaaaagaag----aaatggtctttt--------tcctcttcatgAGATACTCTCACTCTAGAAATGGGGGA------------------GAGGGGggttcagaaaaaagagaaaaaatactgTTCT--CGAGGAAGAAGACCTTTGCTCGACA--GAATTTCGTCgaattttc------ttctggaaaag-------agagaataaacaa--aaaaaacttactggcAATTGGAATTCTTTCCTTCGGAGAGCCTTTTCCATATGTCGGGGTGGTACTCCTTGGGACGCTTGTCGCATGTGGCtcctgaaa
i caeRem4.Crem_Contig0 I 5 I 1
s caeSp111.Scaffold629 33081028 306 + 33334924 ccattttcagcCACAAG--AATATCatcataaaaaagaaaacacaaaa----gaTGCATGGAAAGagg----aaatggtttttt--------ctgt-ttcatgaG--AGTCCTGC-------GTGAGTCTTCAA--------------AAGTGATGgtgtgaaaaaaaa-gaagaaaaaaactgttttgcCTACATCGACCTTTCCTAAATG-------TCTTTTCTTGCTT---CATTTTCTGGAATG--------gagaataaaca---aaaaaactaacggGCAGTTGGAATTCTTTCCGTCGAAGAGCCTTTTCCATATGCCGGGGTGGTACTCCTTGGGAAGCTTGTCGCATATGGCTCCTGAAA
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0      2880130 297 -  4147112 cgttttttattcaaaag--gaTATCATCgtaaac---aaaacacaaaa----gatGCATGAAGAGCGA----AAATGGTTCTTT--------TTG---CCATGAG--AGAGTCAC-------ATAAGACTCCAC--------------AAATGAGAGTgtgagaaataa--aagaaaaaaactgttctgcTCCCA---ACCTTTGTTCaaggctcatttttctttctctctc---aattttctg---------------gaataaaca---aaaaaacttactgggAGTTGGAATTCTTTCCGTCGAAGTGCCTTTTCCATATGTCGGGGTGGTACTCCTTGGGACGCTTGTCGCATATGGCTCCTGAAA
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951    39951 255 +   152553 cttctttta----------aaTCTCAGAATAAAC---TTTGAGCAACT----GAC---------CAGG----CAATTGCTTTTA-----------------------A-----AC-------AAAGAATT------------------GGGAAGATGTGCTAAGTGCaacaaaaaacggaattttcct--------------------------ttttttttttttggtgtg---catttgcaaaaaaatcagaagaaagaataaaca---aaaaatcttaCTGGAAGTCGAACTTCTTTTCGTCGCAATGCTTTTTCCATCTGACGGGGAGGTATTCCCTGCGACGCTTGTCGCATGTGGCTCCTGAAA
i caeJap4.Scaffold4951 C 0 C 0

a score=-79116.000000
s ce10.chrX             2129851 212 + 17718866 GTTTAAATAATGGATCAAAGATTT--------GAAGTTTTTTTTTTGAA---------ATAC---------------------------AAAAATATCTGCTAGCATACA-------------TTAG----GAAATTTCTAT----CCGAAA---A------------------------------------AAAAAATTCAGA-------------------AAATAGCTCAG-----------------------------GTCAGAAAT----TGTTTGA-----ATTAACT--------------------------ATCTAATTG-ACACCTAAAGGTT------TCAAATTT-------------CCAAA-------------------AACTTTTCTGCAATTAGTTTCGAGTATAAACA----TTACATATCAA
s caeRem4.Crem_Contig0  4377149 357 +  4500979 gttttgaaagttcatAAAACATCC----GAGAAAAGTGGATTTGAAGAACATGATAGGGTATTTTGGCCTCcccaaaaagtttgaagtgGGAGTTATTTTGGATGTCACTAAC----------CCGAGAACAAAGTACGCGT----ACACAG---A----AATGAATTTCTGTGAAAGTGAACAAGTACCGTAATACCTTCTGGAGTG---------------GAACGAAGCTGAACTGATAGTTTTCCGACGAACTTCTTTGTTTAGAAATATGATACTTGACTATCAATATCTTTCTATAC------------------ATAAAATT--CTATCATAAACTTGgattttcacacttt------------tgaaT----CAGAATAGCTGTTAGaatgtttg-----gttttttctaatataaaca----taatttttcaa
i caeRem4.Crem_Contig0 I 1 I 17
s caeSp111.Scaffold629 33081334 254 + 33334924 GTTTAGAAAGTCCAAAAAACACAG---GGAGAAAAGTGGATTTGGAGAACATGAGA-TATAT---------------------------AAACATATCCGA----------------------CCga----aaattctctat----tttcaactCAATTCAATAGACTTT------------------TTATAGAAC--TTTGG-------------TTC---GCGTGTCTCAA----------------TCGTTCTTAAATATTCGGGAACAATAGGATCGA--------------------------------------ATGGAATCGCGTGT-----AACTGGA---TCATATTCTGTTAGGA-----TCAAA----CTCCAAACCC-----AGTTTATC-----AAAGACTCAAATA----------AAAgttcgaaa
i caeSp111.Scaffold629 C 0 I 7
s caePb3.Scfld02_0      2880427 391 -  4147112 GTTTACAAGGTCCAAAAAACATAT--CGTagaaaaatagatttgaaGAACATGATAGGATAT---------------------------AAACATATCGTAGAACTTTCTAatggaaaacttttcga----aaagtttgaatgaaaGTCCGA---AATCCAATGAACTTTAGGGTTGCGTGTTCAATGTTCTAAAACATTCTGGAACAATGAGATCATTCAAAGAAGGAATCAAAACAGAAACTCTAC--TTGctctt-----ttcaagaaaaaatagcttgataactgaaaactaacaaagcCCTGGTTTCAGGATTATCATGAAATTGAGCATTCGAAAGTTTGA---CTATATTTCAACAGCACGATGTCAAATGttcccaaaaacttccagagcttttC-----ACAAAGTccaatattcatatttttcgttttgaaa
i caePb3.Scfld02_0     C 0 I 16
s caeJap4.Scaffold4951    40206 110 +   152553 -------------AAAGAACAGAGGGTGgaggaaaat------------------------t---------------------------aaattttttct-----------------------tcga----ag-------------acaaaa---a------------------------------------aaaaacgccaag----------------------------------------------CTAATTGTGAATGGTAGAAAAG-------------------------------------------------ATAGAAATAGAAACTCGCGGTTT------TTGC----------------------------------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13608915 1113 - 21540570 I

a score=207753.000000
s ce10.chrX             2130063 435 + 17718866 TTACCATTTGTTCCTTGTTGGTTTTGATGAATGATCTGATCGCAGGTCACCGGGACACGAACGTGTCTCCGCGTCGTCTGAGCAGCCGACAGCTGGTTCGTCGACGCTTCGGTCACCCATTTT-TGGCAGAAATG----TTTGTTGA---TTTTATCGACCCGAT-AAAAGT--TTAACACATCTGAAAATA--------CATTATAGTAATATA---------TAAAGAACATATTATTTCTGTATG-------------AACGTGCGAAATCATAAAAGAGACGGGGGAATAGGCAGACAACGCATGTTGTCA--TACTTT--TCATGATGCTAATTTTCGAGAG---TA-TATAA----GGCAAAATATATGAGGAAAATTGCAGA---------ATTGAGAAGATAATGAGTTCAATT-TCGAAGAGTGACGAC-GTGGAATGAAAAAAGACTCGAG-AAAACCGGGGGTGACGAAGAACATAGAGAG-CCGGAAGT
s cb4.chrX             13610028 439 - 21540570 TCACCATTTACTCCTTGTTGGTTTCGACGAATGATCTGATCGCAAGTCACCGGGACACGAACGTGTTTCTGCATCATCTGAGCAGCCGACGGTCGCCTCGTCGATGCTTCGGTCACCCATTTTCCGTAAGAGACGTCGTTCACTTTGTGTTTTTATCGACCCGATAAAAAAG--TTAGtacatctggaaaaa--------taaaaaaagatt------------tttgggGAGAAACGTGTGTCTGTGTATATGTGCACCAAGTGTGCAAA-------ATGAG--AGCAAATTAG----------------GTTTTATACTTT--TTATGATGCTAATTTCTGAGAGTACTAGTATGAAGt-gaggagagagaaaaagagaataggCAATGTGTAGGGAAAGAAAAGATAATGAGTTCAATT-TAAAAGAGTGGCGAG--------GAATGAAAACTCAAGAAAAACACGG---GATGGGGGTGAAAAAGAGTCCGGAAGT
i cb4.chrX             I 1113 C 0
s caeRem4.Crem_Contig0  4377523 403 +  4500979 TTACCATTTACTCCTCGTTGGTTTTGATGAATGATCTGATCGCAAATCACCGGGACATGAGCGTGTTTCTGCATCGTCTGAGCAACCGAATGTTGCTTCGTCGACGCTTCGGtcacccattttttgaatgaaatg----tcACTGTGTG-TTTTATCGACCCGAT-AAAAAT--TTAATACATctaaaaaaa--------cggaaaag----------------tttGCAAGAAATCGTGGGTGTAAG-------------AGTTTGCAAA------GAAGAGGTGGCAAATTGG----------------GTTT--TACTTT--TCATGATGCTAATTTCTGAAAG---TAGTATA-----GAGGAGACGAagggggagaa----------------gaagaaaagataaTGAGTTCAATT-TTAAAGAGTGAAggg--tgaaaagaagaaagactCGAGAAAAACCGGGAGTGACGAAGGACAGAAAAAGGCCGGAAGT
i caeRem4.Crem_Contig0 I 17 C 0
s caeSp111.Scaffold629 33081595 426 + 33334924 ttaccATTTACTCCTCGTCGGTTTTGATGAATGATCTGATCGCAAATCACCGGGACACGAACGCGTTTCTGCATCATCTGAGCATCCGACGGCCGAGTCGTCGACGCTTCGGTCACCCATTTT-TGTGAGAAATG----TAACTGTG---TTTTATCGACCCGAT-AAAAAGTATTAGTACATCTGAAATAA----TTAGTTGAAATATAGAATA---------TTAGAGATGAAAAGTACGAATACG---------AGAAAATATGCAGA------AAAGAGGTGGCAATTTGA----------------AATA--TACTTT--TCATGATGCTAATTTTTAAGAG---TAGGAGGGGCGGAGAGGGagggaaaaggagag-----aat--------gaagaaaagataatGAGTTCAATT-TTAAAGAGTGGAAAGCGTGAAAAGAAGTATGGCTCGACAAAAACCGGGAGTGACGGAAGACAAAAAGAG-TCGGAagt
i caeSp111.Scaffold629 I 7 C 0
s caePb3.Scfld02_0      2880834 409 -  4147112 TTACCATTTACTCCTTGTTGGTTTTGATGAGTGATCTGATCTCAAGTCACCGGGACACGAACGCGTTTCTGCATCATCTGAGCATCCGACGGCTGAGTCGTCGACGCTTCGGTCACCCATAAT-TGTAAGAAATG----TTACTGTT---TTTTATCGATTGGAT-AAAAATGATTagtacatctgaaaaaaattgttgcttGAAAAATAGTACGAATTCTTGTTTAGAAACAAAACG----------------------AAGTGTGCAAA------AGAGAGGTGACAAATTAG----------------GTTC--TACTTT--TTATGATGCTAATTTCTGAGAG---TA----------CTAGAGTggaaatagga-------------------aaagaaaagataatGAGTTCAATT-TTAAAGAGTGTagag-atggaaaaaagaaaggctCGAGAAAAACTGGGGGTGACGAAGGACAGAAAGCG-CCGGATGT
i caePb3.Scfld02_0     I 16 C 0
s caeJap4.Scaffold4951    40316 377 +   152553 TCACCATTTACTCCGTGTCCGTTGGGCTGAATAATCTGATCTCAAGTCACCGGGACATGAACGTGTTTCTGCGTCGTCTGAGCAGCCAACTGCAGAATCGTCGACGCTCCGGTCACCCATTTT-TGTATGAAATG-----CGTTGTTTT-CTTTATCGTTTGGAT-AAAAATTAGCAGCGCATCTGGAAAATTAATTGGATTGAAAGA----------------GTTTTGAGGGTATGTGTGTATGCg---------agaagacaaaaaaa------aaagaagtgaagAAGTA-----------------GACA--TATTTTGCTTAAAAGGTCAATTT----------CA----------CTGCAaagatattgaaa-------------------aaaaagaagataatgagtttaattattgaaaaaagaagag-----aaaagagaaa---------------------aacagagaacagaaatat-tcgaaaat
i caeJap4.Scaffold4951 C 0 I 245

a score=16665.000000
s ce10.chrX             2130498 42 + 17718866 ATAGCGAGAGCACA------GAAAAGAGCAACAACTCATTATTTTAGA
s cb4.chrX             13610467 48 - 21540570 ATAGCAAGAAAATGAGACATGAAAGAAAGAAGATCTCATTATTTTAGA
i cb4.chrX             C 0 I 87
s caeRem4.Crem_Contig0  4377926 42 +  4500979 ATAGCGAGAGGACA------GAAGTGAGCAACAACTCATTATTCTAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33082021 36 + 33334924 atagaaaaag------------agagagaaacaactCATTATTTCTGG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2881243 40 -  4147112 ATAGCAAGAGCACA--------GAAGAGAAACAACTCATTATTCCAGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    40693 245 +   152553 I

a score=180.000000
s ce10.chrX             2130540 1 + 17718866 A
s caeRem4.Crem_Contig0  4377968 1 +  4500979 a
i caeRem4.Crem_Contig0 C 0 I 188
s caeSp111.Scaffold629 33082057 1 + 33334924 A
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2881283 1 -  4147112 G
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    40693 245 +   152553 I
e cb4.chrX             13610515 87 - 21540570 I

a score=-879.000000
s ce10.chrX             2130541 10 + 17718866 CGTGAGAACA---
s caeSp111.Scaffold629 33082058 13 + 33334924 AATCGTGAAAATA
i caeSp111.Scaffold629 C 0 I 174
s caePb3.Scfld02_0      2881284 10 -  4147112 agtaacaaaa---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    40693 245 +   152553 I
e cb4.chrX             13610515 87 - 21540570 I
e caeRem4.Crem_Contig0  4377969 188 +  4500979 I

a score=119.000000
s ce10.chrX             2130551 5 + 17718866 AAAGA
s caePb3.Scfld02_0      2881294 5 -  4147112 ataaa
i caePb3.Scfld02_0     C 0 I 203
e caeJap4.Scaffold4951    40693 245 +   152553 I
e cb4.chrX             13610515 87 - 21540570 I
e caeSp111.Scaffold629 33082071 174 + 33334924 I
e caeRem4.Crem_Contig0  4377969 188 +  4500979 I

a score=0.000000
s ce10.chrX             2130556 969 + 17718866  
e caePb3.Scfld02_0      2881299 203 -  4147112 I
e caeJap4.Scaffold4951    40693 245 +   152553 I
e cb4.chrX             13610515  87 - 21540570 I
e caeSp111.Scaffold629 33082071 174 + 33334924 I
e caeRem4.Crem_Contig0  4377969 188 +  4500979 I

a score=649.000000
s ce10.chrX             2131525 27 + 17718866 TCATTAGATTTCTGGTGTTGTATGGAA
s cb4.chrX             13610602 27 - 21540570 tcatctgattcTCGGTACCTTGGAAAA
i cb4.chrX             I 87 I 8
e caePb3.Scfld02_0      2881299 203 -  4147112 I
e caeJap4.Scaffold4951    40693 245 +   152553 I
e caeSp111.Scaffold629 33082071 174 + 33334924 I
e caeRem4.Crem_Contig0  4377969 188 +  4500979 I

a score=9247.000000
s ce10.chrX             2131552 32 + 17718866 AAAAATGCACA---ACCGAATAA--AAATTTACAATT
s cb4.chrX             13610637 34 - 21540570 GAAAGTGCAAA---GTGGAGTGGAAAAATTTGCAATT
i cb4.chrX             I 8 C 0
s caeRem4.Crem_Contig0  4378157 37 +  4500979 aaaagtgcaaaactgtGGTAGGAGAAAATTTACGATT
i caeRem4.Crem_Contig0 I 188 C 0
s caeSp111.Scaffold629 33082245 32 + 33334924 AAAAGTGCAGG--AATGGAGAGG---AATACACTATT
i caeSp111.Scaffold629 I 174 C 0
s caePb3.Scfld02_0      2881502 33 -  4147112 AAAAGTGCAGA--TCTGGAGTGG--AAATTTACAATT
i caePb3.Scfld02_0     I 203 C 0
e caeJap4.Scaffold4951    40693 245 +   152553 I

a score=191081.000000
s ce10.chrX             2131584 521 + 17718866  
s cb4.chrX             13610671 584 - 21540570  
i cb4.chrX             C 0 I 29
s caeRem4.Crem_Contig0  4378194 492 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 33
s caeSp111.Scaffold629 33082277 480 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2881535 477 -  4147112  
i caePb3.Scfld02_0     C 0 I 1869
s caeJap4.Scaffold4951    40938 452 +   152553  
i caeJap4.Scaffold4951 I 245 C 0

a score=-4514.000000
s ce10.chrX             2132105 26 + 17718866 CGGAAGTTAAA-----ATGTTAAAAGAAAAT
s cb4.chrX             13611284 15 - 21540570 TG----AAAGA-----ACTTTTAG-------
i cb4.chrX             I 29 C 0
s caeRem4.Crem_Contig0  4378719 26 +  4500979 TGTGGacgaaa-----actttaaaaaaagat
i caeRem4.Crem_Contig0 I 33 I 69
s caeSp111.Scaffold629 33082757 21 + 33334924 tgagGTCAAAG-----ATTCTGAGAA-----
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    41390 27 +   152553 ----TATGGAATTCTTATCTTGAAAATACAC
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2882012 1869 -  4147112 I

a score=-10446.000000
s ce10.chrX             2132131 73 + 17718866 GGAAAACAACAGTGACAAGAGAA---TAACATT---TTTTGCTT---TGTTT-TTTTTTGTCAGAAAA--AAACTTTCCATAAAT
s cb4.chrX             13611299 52 - 21540570 GGAAATC-----TTCTGTGGGAAAACGGAAAGTTTGTTTTGATt----------------------------ggcttcaaaaaat
i cb4.chrX             C 0 I 2
s caeSp111.Scaffold629 33082778 37 + 33334924 ------------TGCCATGAGAA---GCAAACT---TTCTGA------------------------------AGTTCCCAAGTat
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    41417 66 +   152553 -----------GTTAAACGAAAA---GGTgtat---ttatgtatgtatgtgtaTTTAACgtgagaaaaatacaatttaaaagG--
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeRem4.Crem_Contig0  4378745 69 +  4500979 I

a score=-18872.000000
s ce10.chrX             2132204 65 + 17718866 GAAAACATATATACATA-TTGATGTATACATAG-----TAAAGACTATACAAAACATATG-TTT--------CAAAA----------------ATT
s cb4.chrX             13611353 45 - 21540570 --gagtcgaatt-------------------------------ttcaaataaatttca---tga--------gaaaattttttgat-------atc
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4378814 86 +  4500979 GAGAATAGAAATGAA----TGATGTAAAAGCCA-----CAAAATTTAGAAAGATCAAAAG-TGATATGCCACGAAAATCATTCAATCAgataaatt
i caeRem4.Crem_Contig0 I 69 C 0
s caeSp111.Scaffold629 33082815 37 + 33334924 ----gatgaaat-------------------------------ttgaaatcattcaaaagttca--------aaaaa----------------att
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    41483 66 +   152553 -----GAAAATTCCGTATTTGATCCATAAAtagatatttaaaaaatatagcaaaaaaacc-ttt--------aaaaa----------------att
i caeJap4.Scaffold4951 C 0 I 2031
e caePb3.Scfld02_0      2882012 1869 -  4147112 I

a score=-68249.000000
s ce10.chrX             2132269 807 + 17718866  
s cb4.chrX             13611398 861 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4378900 752 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33082852 645 + 33334924  
i caeSp111.Scaffold629 C 0 I 40
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=-1829.000000
s ce10.chrX             2133076 33 + 17718866 ATA-TTTACACGAAGGAATATATTAAAAAATATG
s cb4.chrX             13612259 22 - 21540570 gAG--TCTTTCGAAG--CTAGACTGA--------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4379652 25 +  4500979 gaacttttttcgaaa--ataggttaag-------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeSp111.Scaffold629 33083497 40 + 33334924 I

a score=-16194.000000
s ce10.chrX             2133109 117 + 17718866 ------------------AATATTGAAA--------AGAACATATTTGATGCCGTTTCAAAA-----------ATTAAATA-------TTTGTTGAGAAACATT---TTTAAAATCAAAAACTATGTCGTGCACTGGTAATTCACCTGCTT------------ATTTCTATTTTGA
s cb4.chrX             13612281  78 - 21540570 ---------------CGTAAGCTAGAAACTG-----GGAGTGTATCAGAA-----------------------ATCACATGGTATTT-TTTGGTGTTGGATTCT---TCTAA---------------------------------------------------TTTATTATTCTCA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4379677 129 +  4500979 attgaaaaaaatctttttaaactcaacaaaa-----atag-gtatctgaa----ttttgaag--caattctagattctattttatttatatGGTGTTTGAATCCATGTCTAGAA--------------AAACAC---------------------GAgattgtatttttattttta
i caeRem4.Crem_Contig0 C 0 I 84
s caeSp111.Scaffold629 33083537 137 + 33334924 ------------------aacattgaaatgaCTAATAGAG-GAATTTagc----ttttaaaaatcatttcaaaatcgtATGAAATGA-TCTAGTTCAAGTTTCT---TCAAGTA-----ATTTAGCCCAAACAC-------TCACAAGCTTCCATTACACTGAAGTTCTGTTTTTA
i caeSp111.Scaffold629 I 40 C 0
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=-2801.000000
s ce10.chrX             2133226 57 + 17718866 GTTGACTACGACAAGAAAACTATGCCTAAAATATCACGTGAATTTTCAGAACATTGT---------------
s cb4.chrX             13612359 43 - 21540570 -GTAActacgagaaaaaaaac---tacgaaacgTC------------------TTGTGTTCAAAA-------
i cb4.chrX             C 0 I 10
s caeSp111.Scaffold629 33083674 59 + 33334924 tgaatattcgaaatgaaaact---cgaaaaacatCA-------TTGCAG---actgtttttcaaacagCTAC
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeRem4.Crem_Contig0  4379806 84 +  4500979 I

a score=-19533.000000
s ce10.chrX             2133283 177 + 17718866 -AGA---GAATACTATCA----AAG---ATAAAATGCTT-------------GAGCTACCCGAA--AACATAGTT-GTTTTCCAGA-------------CAAAACTATT-TTTTTCAAACAAGGAACATATCTCAA-TACAAAA----------------ACAATAT-----------------TAATT----ACGGAAGTTGATAAAACCGAAAAA-----------AATATTGTTGGCTCAGTATTGTGCAGaata------------------------aaatataaa
s cb4.chrX             13612412 201 - 21540570 -AGATTTGAATCCCACCA----GACTTCATCGTCTCTTT----------------ctgtcttat------------ttttttcagtttttcaattactgag-----attgtctgaaaaac--------aaatgaaaattcaaag------cggTACGAGGGAAATCT-------------TGAGAAAATCTCGGTAAAAGGCAAGGAAC---AAAAA-----------CACTGTATCAATTTCTcgatctcaaaaaaa-----------tcatggCGGAACTAAAATGAAA
i cb4.chrX             I 10 C 0
s caeRem4.Crem_Contig0  4379890 224 +  4500979 -AGA---gaattctttca----gattttttctaattacT------------GAAGCTGTCCCacaaaacaaatgaaaattctcagt-------------aa-----att-tcagaaaaacacggaacaaaactaaaataaaaag-aatctAATCAACATAGGAATCTATGCCTACTACGGTTAGTGATT----GCGGAAGTAATGGGAA---AACGACTaccttttttcacaaaatgagGTTTtagttgtgaaaaaaa--------------------aactaaataaaaa
i caeRem4.Crem_Contig0 I 84 C 0
s caeSp111.Scaffold629 33083733 239 + 33334924 AAGA--CGGATTGTATCATGGGGAATTCATagattcttttcaattacCAGGAAAGCTGCACgaa--aacaaacgg-aattcacaag-------------ga-----aat-tcagaaaaacacggaacaaaacaaaa---caaagcGGTACTATCATCAAAACGATCT--TCATCCTATGCTGACCGATATTT-GCGGAAGTACTGAAGA---TGAGA-------------------TGATTTTCggttggaaaaagaaaaagaagacgtttttgatgagaagaaacaTAAC
i caeSp111.Scaffold629 C 0 I 3
e caePb3.Scfld02_0      2882012 1869 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=186400.000000
s ce10.chrX             2133460 624 + 17718866  
s cb4.chrX             13612613 736 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4380114 692 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33083975 681 + 33334924  
i caeSp111.Scaffold629 I 3 I 173
s caePb3.Scfld02_0      2883881 653 -  4147112  
i caePb3.Scfld02_0     I 1869 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=5593.000000
s ce10.chrX             2134084 46 + 17718866 ACACCACGTTCTTGCCGATTTTCGAACTATCAATTTTACGAAAAAA
s cb4.chrX             13613349 32 - 21540570 ------------Gatggaatttcgaa--acaaaataTGATGAAAAA
i cb4.chrX             C 0 I 24
s caeRem4.Crem_Contig0  4380806 32 +  4500979 ------------Ggcggaatttcgaa--ataaatacTATTGAAAAG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2884534 32 -  4147112 ------------Gatagaatttcgaa--ataaatagtatcaaaaaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I

a score=-1167.000000
s ce10.chrX             2134130 3 + 17718866 ATT-
s caeRem4.Crem_Contig0  4380838 3 +  4500979 -TTT
i caeRem4.Crem_Contig0 C 0 I 127
s caePb3.Scfld02_0      2884566 1 -  4147112 a---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613381 24 - 21540570 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I

a score=548.000000
s ce10.chrX             2134133 13 + 17718866 TCATTTTGGGAAT
s caePb3.Scfld02_0      2884567 12 -  4147112 -agttttgtgaat
i caePb3.Scfld02_0     C 0 I 325
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613381 24 - 21540570 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I
e caeRem4.Crem_Contig0  4380841 127 +  4500979 I

a score=0.000000
s ce10.chrX             2134146 21 + 17718866 TTCGAGAAAAAATCGTTTTTC
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613381 24 - 21540570 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I
e caeRem4.Crem_Contig0  4380841 127 +  4500979 I

a score=-1453.000000
s ce10.chrX             2134167 401 + 17718866 TTGCGAAAATCTTGAAAAGCTAAAATTTTGCTAGTGGGAAAAATTAAATAATTATTCTTTTCAGATATTTTTTCGATATTTTTGTATGTTTTCGCATTCAAAAAGAGAGGCGAGTTTGGTTTTACTCTTTCATAATTTTAGAAAAAGTTTATAATTTAAGTATGTATCGGACAGTTGTATTTCACATTTCATGGGCTCAAATATGAGAAATTGCTCCAAATTTTTCAAAAACTCCGAATTTTTAAACCCTAAAATCTTACTGAAACAAAATTCTTAAAAACAATATTGCTCCTAAAAAATTGA-GAATATGTCGCTGAATTGACAAAATATGACAGAAATTTTTAAA-----AGTTTAAAACGCACATTTTTAGTAAAAAGGAGGATATCACTCAGTTTTCACTTAT
s cb4.chrX             13613405 264 - 21540570 CTGAGAAAAACATGgtaa--------------aaagagagaaagtaaa-------------caaaaattatttcg----------------------tTAGGAAAATAGGTTTTTCTGGATCCAGACT----CGATTTagtaaaatattttcaa---gatGACGTA--------------------------------------AAGGAATTTCAACTATTTTCTCGgaaataccg------taaagcctAA-----------------------------AAAATGACCCCT------TTGACTAATATATCTCGGATTCTGTAAAAGATTGCAGAACAGTTTCAACAAATAATTTGTCATGAATATTATcgttaac-------atttta-tcagttgtcattTCT
i cb4.chrX             I 24 I 29
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I
e caeRem4.Crem_Contig0  4380841 127 +  4500979 I

a score=0.000000
s ce10.chrX             2134568 25 + 17718866 TATAATTTTTTTTTTCGGCTTTTCT
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613669 29 - 21540570 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I
e caeRem4.Crem_Contig0  4380841 127 +  4500979 I

a score=-97.000000
s ce10.chrX             2134593 211 + 17718866 TGTAAATTTAGGCACTGTAGGACTCAAACGTAAGAGAATGCGTTAAAATTCTTAA-AATCAAAAAATTGGC---AATTTGCCAAAAC---CATTCACAAAAAATAT-----TATTTAGATAATTGGATTTTAGCTTATTTTATGTATACTTTGACAAAAAGCGCTTTTCTA------ATTT----GAAAAAAAAACACGTACATTAACTACATATATGGGACTATA-------TTTTGAT
s cb4.chrX             13613698 229 - 21540570 tgaaaatttaaatgttTCTTGGCTCGcatggaagata--tcaaaaaaagtgtcaacagataaaatgttggcgataatatgataaatcaTTCATTAGTTAAAAACGTTCTCCTATttaaaaaaccg------agataaattggcttaaagtttaaaaatagggacccttctattacaggttttccggtAAACAAATTGAATACAACAAAT---TGAGTTAAGCTATAATGTAGCTTCTCCT
i cb4.chrX             I 29 C 0
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I
e caeRem4.Crem_Contig0  4380841 127 +  4500979 I

a score=-952.000000
s ce10.chrX             2134804 51 + 17718866 -ATTAAAAAAAAACTATACTGAAAACTAGACCCAGCTTATTGACTTCAAATT
s cb4.chrX             13613927 39 - 21540570 GTTTCCAATGAAAATGAAGCGT-------ACGTGGCAA------Tgtaaatt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4380968 42 +  4500979 -atttaaaaaaaattttaattt---ctagattttgatt------tttaagtt
i caeRem4.Crem_Contig0 I 127 C 0
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeSp111.Scaffold629 33084656 173 + 33334924 I

a score=-1649.000000
s ce10.chrX             2134855 29 + 17718866 ----------TGAAAAAAAAAA-AAATAAACTACGTAC--CC
s cb4.chrX             13613966 30 - 21540570 cagaa-----agaaaaaaacagtgaaca---TGTGTCC----
i cb4.chrX             C 0 I 27
s caeRem4.Crem_Contig0  4381010 34 +  4500979 taacaattttagaaaaatacaa-GAATA---TTACTAT----
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold629 33084829 26 + 33334924 ----------tgtaaaaaagaa-gaata---caCGTACAA--
i caeSp111.Scaffold629 I 173 C 0
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=-1975.000000
s ce10.chrX             2134884 23 + 17718866 CCACG-----TAATCTATGTACATCGAA--
s caeRem4.Crem_Contig0  4381047 21 +  4500979 CCACGTGTG-------TTTTACACTGTT--
i caeRem4.Crem_Contig0 I 3 C 0
s caeSp111.Scaffold629 33084855 28 + 33334924 --ACGACTAATAACGCTCTTAcacaaaaaa
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2884579 325 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613996 27 - 21540570 I

a score=-572.000000
s ce10.chrX             2134907 16 + 17718866 TCCCGAATCG--ATGT--AT
s caeRem4.Crem_Contig0  4381068 16 +  4500979 CTCCGGATAG--ATTGCC--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33084883 14 + 33334924 tccagaatcG--ATTT----
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2884904 16 -  4147112 TCCCGGATCAATATTC----
i caePb3.Scfld02_0     I 325 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13613996 27 - 21540570 I

a score=124365.000000
s ce10.chrX             2134923 747 + 17718866  
s cb4.chrX             13614023 786 - 21540570  
i cb4.chrX             I 27 C 0
s caeRem4.Crem_Contig0  4381084 817 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 224
s caeSp111.Scaffold629 33084897 869 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2884920 897 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I

a score=12049.000000
s ce10.chrX             2135670 117 + 17718866 AAGTCCCAGAGGAG---ATA---------TT------------CCATTGAAAACGGATGCACTTTTA-----TTCCGTTCGGTTAGAACATAATTTGTTGAATGGATGGGAAATATGAGGAGAAAGAAAGAGGATAAAAGC---------TTCAA
s cb4.chrX             13614809 114 - 21540570 ------GAAAGGGAAAAGCGACGACCCTTTTGAATGTCTAGGACTATTAAAC------GCACTCTTAGACGTGTTCGTTTG--------------TGTTGAATGGA---TAAAGAGAGGAAGAATAAAACAAG---GAAGT---------TTCAA
i cb4.chrX             C 0 I 2669
s caeSp111.Scaffold629 33085766 114 + 33334924 -AGTCCTAAACGGA---GCA---------TTCAATGTCTGGGACTATTAAAA------GCACTCTTG-------CCGTTCGGATTGAACACAA-TTGTTgaattga---gaaagagaagagaagagaaacaag---gaagtt--------ttcaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2885817 120 -  4147112 -AGTCCTAAAGGGA--GGCA---------TTCAATGTCTAGGACTATTAAAA------GCACTCTCG-------CCGTTCGGATTGAACACAA-TTGTTGAAtaag---aaaagggga---aaaagaaatgag---gaagtttcatgaaattcaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=-1487.000000
s ce10.chrX             2135787  4 + 17718866 CTTT---------
s caeSp111.Scaffold629 33085880  4 + 33334924 catt---------
i caeSp111.Scaffold629 C 0 I 261
s caePb3.Scfld02_0      2885937 13 -  4147112 aagttttatgttT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=27.000000
s ce10.chrX             2135791 214 + 17718866 --GCAGTGCAATTGAATGATAAAGAAATAAC---------AAATGTTG---AAAAATTGTATGAATTTAGTTCTGAAAACAAAACTGGGAATTAATTGAAATTAAAGTTTAAAGGTTTTTTGGaatatttttattttattgacagtccaaaagtggcaattactgagtttttgcCgctttttgagaaatttatatcactgacacatgttcggatccctacaatgtttg
s caePb3.Scfld02_0      2885950 195 -  4147112 TGGCAGTGTTTGGGGCCTCTTAAGGGGTAACTTGTTTGCCAAATATTTTCCAAGGTTTTTATGAGATTTTCAcggagaaaaa----------tgtttgaaattttattttagagGTCTCTCCAA-------TGTTTGA--GAAAGTCTCTGAATGA---------AGCTTTTTCC-----TagacagtttcagaaaaccgaCTCTTAAGAGAATTTCGAGGAGGTTTG
i caePb3.Scfld02_0     C 0 I 26
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33085884 261 + 33334924 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=0.000000
s ce10.chrX             2136005 55 + 17718866 aatattgaaaattgtgacataaatagaccggaaaatttgaaggattttttcatcg
e caePb3.Scfld02_0      2886145 26 -  4147112 I
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33085884 261 + 33334924 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=-3075.000000
s ce10.chrX             2136060 596 + 17718866  
s caePb3.Scfld02_0      2886171 342 -  4147112  
i caePb3.Scfld02_0     I 26 C 0
e caeJap4.Scaffold4951    41549 2031 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33085884 261 + 33334924 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=-59.000000
s ce10.chrX             2136656 31 + 17718866 CATATACCTATATTTATTTTCTTGTTCTTTT
s caePb3.Scfld02_0      2886513 12 -  4147112 CACCTGCCTAAA-------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    43580 28 +   152553 CATATACATATATTTGGCTTCTTCTTTT---
i caeJap4.Scaffold4951 I 2031 C 0
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33085884 261 + 33334924 I
e caeRem4.Crem_Contig0  4381901 224 +  4500979 I

a score=-12274.000000
s ce10.chrX             2136687 74 + 17718866 ----------ATTGTCATCTTTTGAGAG--AAAAAACAAAGCGGTTTATATTTAGTTATTTCTAAATTAGCAGCAAAAATAACTCC
s caeRem4.Crem_Contig0  4382125 70 +  4500979 ----------ATTCTAATGCtatgggaa--aaagaaaaaatcacttcagA-TCAGTAAAGTCCA---TCAATGCAAGAGGAAGCTC
i caeRem4.Crem_Contig0 I 224 I 6
s caePb3.Scfld02_0      2886525 12 -  4147112 ------------------------------------------ACTTC------------------------TGCAGAA--------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    43608 45 +   152553 GTTCCCCAAAACAATAGTGTTTaagcaagcaaaaaaaaaaacaca-----------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33085884 261 + 33334924 I

a score=51586.000000
s ce10.chrX             2136761 355 + 17718866 ------GATCAGAA---ATTGCTCTACAAACTTGCATT-----------------------TTGTGCAAAAGCAAGCACAAAAAAAATCTGATCAGAA--TCAA-GCAAAAAAGAAACAAAAAGTAAATAAAAATGGGAAACCAGAGGAAGCGAGGG-GGGGGA-GAGAATAGAATAGAATAACAAGCGCAAAAAGTGACATAGAAGCAAAATACTCGAAAGT--ATCAAATTTTCAGATGCGTATC--GAATCTGTGCGTGTACGTGTATCTATCTGTGACATAAA--CAATTGC-ACGAAGCTTCAC-----CCACACTC----TCAAAAGATG-CGCTCTAATTGAATGAAGTG--------GGAAGAGAGCATCAGAAGAGACACACATACACAAACTCAAAGTAATACCACC-
s caeRem4.Crem_Contig0  4382201 306 +  4500979 ------AGCCGGAAACTATTGCTCATC--ATTTGCAGAC----------------------CAATGCAAAAACACAGTTTATagaaatataattgaat--------aaagagagtaacaaaaagtaaacaatg----------agaga----------acaaaatgaaaagaaaac---gcgagaaacgcaaaaagtgac---ggagcaaaaTACTCGAAagt--atcaaattttcagctg---at---gaATCTGTGC--------------------CACATAAA--CAATTGCGTGGAAGCgtctattctctttttctctttattgAAAGATG-GGCTCTAATTTAATGAAGTG--------GAAAGAGAGCACTAAAAGAGA--------CACTCACTTGAAGTAATACCAAC-
i caeRem4.Crem_Contig0 I 6 I 36
s caeSp111.Scaffold629 33086145 323 + 33334924 ------GGCCGGAA---ATTGCTCATC--ATTTGCACGC----------------------TCATGCAAAAACACAGTTTATAGAAATATAATCGAAT----------GAAGAGTAACAAAAAGTAAACAGaa----------cgagagagaaagag-aagaga-gagagaaaact---gcGAGAAGCACAAAAAGTGGA---GAAGCAAAATACTCGAAAgt--atcaaattttcagat----atgt-GAATCTGTGCG-------------CGCCCACATATAAA--CAAT---GAAGAagattcatttctttttctctc----ttgaaaGATGGGTTTCTGATTGAATGAAgtgggaaaagagagagagagaatcaaAAGAGACAC----TCACTCACTTAAAGTAATACTACT-
i caeSp111.Scaffold629 I 261 C 0
s caePb3.Scfld02_0      2886537 323 -  4147112 ---------CGGAA---ATTGCTCATC--ATTTGCACACAAACACACCACGCaaaaaaaaggcatgcaaaaacacagtatata-aaatgaaatagaa-----------aaaaagtaacaaaaagtaaacagag----------agtgaaagcgagagtttgagatgaaaaagaaat---gcgagaagagcaaaaagtgaT---GCAGCAAAATACTCGAAagt--atcaaattttcagatgaaaatctAGAATCTGTGC--------------CTCCTTCACATAAA--CAATTGCAATGAAGATTCAT-----------TC----TCAATAGA---GCCTCTAATTGAATAAAGTG--------GAAAGAGAGAATCAAAAGAGA--------CACTTACTTAAAGTAATACCACC-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    43653 285 +   152553 aacagCATCTTGGA---ACAGTTTAGc--ctct----------------------------ctttaaaaaaa--------aaaaaaaaacgtttgcaacaccaacacgaaaaagcaacgaaaagtaaacaaaa----------caaa-----------acgaga-gaaaaggagac---a----------aaaaagtgacgaagaggcaaaatactcgaaaataaaTATCATTTTTCAGTGC-------GAATCTGTGC-------------------TCACTTAAAGCTCACTGAACAGGGGA----------------AC----CTAATAAAT--TGCGGTAATTGAATAAATAG--------GGGTGAATTGAAAAGAAGAGATGCCTTC-CTTTCACTCAATGTAATACCCACC
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13614923 2669 - 21540570 I

a score=1602.000000
s ce10.chrX             2137116 38 + 17718866 CAGAA-----AAGAAGGAATCGAAGCAACATGTTGTCCCGAAC
s caeSp111.Scaffold629 33086468 42 + 33334924 ccgaaagagagaaagagaagagcaACAACTCG-TGTGTCAAAC
i caeSp111.Scaffold629 C 0 I 20
s caePb3.Scfld02_0      2886860 32 -  4147112 ----------AAGAGAAAAGAGCAACAACTCG-TGTGTCAAAC
i caePb3.Scfld02_0     C 0 I 25
s caeJap4.Scaffold4951    43938 28 +   152553 --------------CAGAAAAATCACATACTC-CATTTCAAAC
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13614923 2669 - 21540570 I
e caeRem4.Crem_Contig0  4382507 36 +  4500979 I

a score=28.000000
s ce10.chrX             2137154 5 + 17718866 AAAGA
s caeRem4.Crem_Contig0  4382543 5 +  4500979 GTCTG
i caeRem4.Crem_Contig0 I 36 C 0
s caeSp111.Scaffold629 33086530 5 + 33334924 Aacca
i caeSp111.Scaffold629 I 20 C 0
s caePb3.Scfld02_0      2886917 5 -  4147112 AActa
i caePb3.Scfld02_0     I 25 C 0
s caeJap4.Scaffold4951    43966 5 +   152553 AAAGA
i caeJap4.Scaffold4951 C 0 I 150
e cb4.chrX             13614923 2669 - 21540570 I

a score=-8881.000000
s ce10.chrX             2137159 72 + 17718866 ATTGTTAAGT------GTTCAAATTCAGAAATATTCCCACGTTACATATTTTTTATTTTCTTTGCAGAGCT-------------CTCAATA
s caeRem4.Crem_Contig0  4382548 58 +  4500979 GTTTTCAGAGTTACTCATTTGAATTT--------------------CACTTCTCAAATTTcctaaacattt-------------tgaaaat
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33086535 79 + 33334924 gttttt-gaa------atttaaatttcgatttcttgaCAAAAATAAGGCCGTgggaagaaacagaaaacca-----ACCGAGCAACCGTTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2886922 78 -  4147112 gttttcggaa------atttaaattt-------tcgacgaaaaatgtatttttcaagGAACGAAAAAGTCAGAAACAAAAAGCACCACATT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    43971 150 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I

a score=1007.000000
s ce10.chrX             2137231 181 + 17718866 --TT--------------------------CTCA----------------GTATAA-----TATTT--------AA-----AA--AATAGAC-------A------GAATTTCATGATAGAATTCG---TTAAACCAAAAT------CAA----------GAAAACTTCACGTTTTGAGATAAAT--------GGCGTGGAAGC---------AGAAAATGAAGGAGAAATATTTTTGC----AAGTTGAGAGAAA----GAAGGAGCGGA----GAGGTTGCCATAGTAGGGAGAAATTAGATTT
s caeRem4.Crem_Contig0  4382606 259 +  4500979 --ctaaaaaaagaagacatttaaagaaaaacacaaaaagccAAGATGGCAGTTTCTCACGATATTTCTCCTGCAAATCCGGAGCCGACAGAA-------AATTA--GGATTTCATGATGGAATTCG---TTAAACCAAATG------CGAAAC------CGAGAATTTAAAGttgagaaggaaaa--gaaaaagaagcagaagTGGTTGGTCGACAAAATGGACGAAAAACATTC--------GAGCGG--TGAAT----AAGGGAGCGA-----GAGGTTGCCATAGTAGGaagaaattagattt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33086614 223 + 33334924 --CT--------------------------CACg--------------ccattttt-----tcctttttttgcaga-----ag--aactgaa-------aattt--gaatttgatgaTGAGAGTAGTAATGAAGAAAACTA------CGAAACTAAGAgtgaaatttcaagtttgTGAAgtaaaacgagagaaaaggaagaagcaGGTCGT--AGAAAGttggagaaaaatatatttggaAAGAAGCGG---GAAT----AGGGGAGTGG-----AAGGTTGCCATAGTAGGaagaaattagattt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2887000 198 -  4147112 --CC--------------------------CAcg----------------atattt-----tatttttcttgcaAATCCTTAG--AACCGAAACACCagaattttgggatttcatGATGGAATTCG---TTAAAACAACTAACAAAGTGAATCTAGCATCGAGACCTC-----------gtaaaa---------------aagaatgtttt--gcaa------agaaaaaaatgtatacatAAAAGC---------------AGGGGTGG-----GAGGTTGCCATAGTAGaacaaaattagattt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    44121 205 +   152553 ttct--------------------------cacg----------------atattt--------------tgtgaa-----aa--aatggat-------G------GAATTTCATGATAGAATTCG---TTAAAAGGAAAG------AGTGGTGAATTCTGAAGAAGACAGATTTAGCGATGAAG-----CAAAGAGTTGGAGG---------AAAAATGGGGAAACAAATAAGTGCGCGTTGGAGAAAAGAAAACTGGGAAAAGAGCAAGCTTCAAGGTTGTCAAGG--AGAAGAAATTAGATTT
i caeJap4.Scaffold4951 I 150 I 948
e cb4.chrX             13614923 2669 - 21540570 I

a score=6994.000000
s ce10.chrX             2137412 68 + 17718866 TTCC----TTGATGGAAAATGAAGGAAACTAGGAAGAAAAAGGCGAGTCACTCAATCCGTTTTCCACA---AAAA
s caeRem4.Crem_Contig0  4382865 55 +  4500979 ttct----tTGATGGAAAATGGGCAGTGGCA-------------TAGACATTCAATCTActtggaaga---aaaa
i caeRem4.Crem_Contig0 C 0 I 118
s caeSp111.Scaffold629 33086837 45 + 33334924 ttct----ttgatggaaaatggaagg------------------GAGACACTCAATCTATTCg--------gaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2887198 57 -  4147112 tttttttcttgatgaaaaaCGGGAGC------------------TAGACATTCAATCTcattgaaagaaataaaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I

a score=-2351.000000
s ce10.chrX             2137480  94 + 17718866 AATA--ACTAATTTTGTTTCTCATTTCACCGGGAAAA---------------AAAACATAAATTTTCCATTATGGAACTATG-------TACAAATCGTTGGAAACA------TCAACAGTCAA
s caeSp111.Scaffold629 33086882  97 + 33334924 aataggagtaa-------------gaaaaaaataaaagatgaggagaaaaggaaaacaaaa-----ccagtatgaaaatattccttaaccacaattttcaaaaa---------tacaaaatttc
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2887255 103 -  4147112 aataagagtaa-------------ataaccgagaaaa---gaagaaaaacgtaacaagaaa-----tCGCCAAGAATTCAGAGCTCAACTacaaatctccaaaaaaaatattttgcaaaatGAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeRem4.Crem_Contig0  4382920 118 +  4500979 I

a score=3907.000000
s ce10.chrX             2137574 101 + 17718866 -----------------CAGTTGTTCACG---------------TCTCTCAATTTTGGATAGG----CACATGCATGACACATTTATTGTTTATATTGTATATAGTGG----TTGAACAAAAATTAAACAAA--GTGAATGGA
s caeRem4.Crem_Contig0  4383038 135 +  4500979 tggttGTTCAATC--GTTTTCCAATTACCACCACTGGTTGCTTTATCCCAAATTTGGGGTGGACAGCCACACGAATGTCACAAATACTATTTGGATTGTATGTGGTGG----CTGAacagaaatcaaacaaa--atgtGTGGA
i caeRem4.Crem_Contig0 I 118 I 204
s caeSp111.Scaffold629 33086979 105 + 33334924 ------------t--tttttttattcact---------------gTCTCCAATTTGG-ATGAA----CATACGGACAAGacttttattatttgaattgTATATAGTGG----CAGAACAAAAACTAAACAAATTgtaaaaaga
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2887358  87 -  4147112 ------------CAATTTTTCTGACCATC---------------TTTTGCAATCTGG--TGAA---------------------TACTCTTTG---TGTATCTAgttgaaaatagaacaaagagaaatgaaa---taaacGGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I

a score=-2933.000000
s ce10.chrX             2137675 43 + 17718866 GACGGGAGCGGAATTCGAATAAAAAGATTAAAATATTTTTGAA--------------------------------------------
s caeSp111.Scaffold629 33087084 40 + 33334924 aggagaggcgagaat-gaatgagaacGT--GAACAATTTGGAA--------------------------------------------
i caeSp111.Scaffold629 C 0 I 120
s caePb3.Scfld02_0      2887445 69 -  4147112 GGGA----------------GAAAACGT--gaacattttggaatttcgtgTGCCAATTCAATGGTGAATGGACTCAATTGGATTGAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=-887.000000
s ce10.chrX             2137718 160 + 17718866 CCAATTTTAATGGAACTCAAAATAGAGGAAT-TGTttgaaagt---gtgggtaccgaaaatgggcaagttgctt--taaaacat---gcctatggtatcaca--atgaccaaataccatagtaaaaaaattat-----------aaaatttcattaaa--aaattcaaaatttcataagatttt
s caePb3.Scfld02_0      2887514 177 -  4147112 TTAGGTTAGATTAGGTTAGATACCGATGAGGGTCTCcggaagaaaagaggaaaacaaaattgg--aaattggtAAATAAGAGATCGAGTTTTTGGCACCATATAATGGTC-----CAATAGCGATAAAATCAggaatgagagagaaaaacacaGTGCACCAAAGCCAAGGTCACCTAAGGCTAT
i caePb3.Scfld02_0     C 0 I 103
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33087124 120 + 33334924 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=0.000000
s ce10.chrX             2137878 84 + 17718866 ttgataattggaaaattttcagttttgcCATTTTTTGGGAGTCTTCGATCAAACAAATTTTTTTTTCGTTCACGTTTAAAGGTA
e caePb3.Scfld02_0      2887691 103 -  4147112 I
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33087124 120 + 33334924 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=4.000000
s ce10.chrX             2137962 389 + 17718866 TTTTTAAATCACAAATATTAATATTAAAACATTGTAGAGATTTGATCATGCGAC----------AGTGCCAAAGTTTtctcaaaaagtggcaaaaacccagtaattggcactttttgattgccaataaaaattttgcaaaatttttt--------tcaaaaTTTCGACAAAAAATTTTTTTTCCAGAATATTTGTATGTCTTTCAAACATTTTTGTTCTTATTTAATTTTTCACCTCAAAAATCTGAACATATAAAATTTTCAAAAAACTTCGGTAATTTGTCAAAACTT------AAAAAATTCTGAATTCGAAAACATTCAAATATGTTTTACACATTTTGAGTGTCTCTTTAGAAAAAAATAAAAGTCAAAAAAAGGAAAAAAAAACAAACAAC--AGTGGTCCTTACCCGG
s caePb3.Scfld02_0      2887794 338 -  4147112 ttttggaattg--aattttaatG----------ATGGAGTTTTGGTGATGCAATTCGGGAAAATAGTGCAA---------CAAAGAAcaggaaaagatgaa-aatagtCA------GATTG--AATGTAAATTATAGAATGtgttttgatagttttcaaaattatgaaagagAACCTCTCAGCAA-------------------AAAAGTGTTAG-----ATTTCGTAATTCACCACCAGAAACGGGa--gaaaagattttgaa---------gtgagctgtcaaagattttgaaaaaaagat----------aaaatttccaaaaatattatttccgTTTTCAACAAAGTTT--AGATAAAATATGTTCCAAAAATATAGGACGGCCACGAAAAATGTAGtagttttttcttat
i caePb3.Scfld02_0     I 103 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeSp111.Scaffold629 33087124 120 + 33334924 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=-338.000000
s ce10.chrX             2138351 27 + 17718866 CCGATGAGAAT-----CCGGATAAG----ACTGGCC
s caeSp111.Scaffold629 33087244 32 + 33334924 CCGATGGCGATAAAATCAGGAAAGG----AATAGAC
i caeSp111.Scaffold629 I 120 C 0
s caePb3.Scfld02_0      2888132 20 -  4147112 ----------------cagaaaAGAATATACTAATC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13614923 2669 - 21540570 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=-234.000000
s ce10.chrX             2138378 3 + 17718866 AAG-
s cb4.chrX             13617592 3 - 21540570 -AGG
i cb4.chrX             I 2669 C 0
s caeSp111.Scaffold629 33087276 2 + 33334924 -AG-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888152 2 -  4147112 -AG-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e caeRem4.Crem_Contig0  4383173 204 +  4500979 I

a score=-6415.000000
s ce10.chrX             2138381 292 + 17718866 TGCACCAAGGTCAGAAT------AGGCTATATCGCTCACAG----GACAAGGTAGCTATTAAAAAACCA-TTCACGACGACTGTC---------AGACGGATTGT--AAACTGATGTACTATAAAAATTCCA----CCGGTTGTCG-TCCTGTTTTCGGAATTGAATTTC----------AATTGGATGGAGTTAG--TTTTAGCAGCACGTTTTGC----AAATTTTTCCGATTTTCAATGAAAAATAGTGATAGTGCAACAAAGATCTAA-ATGACGATGTTGATA--------TAAAT--AGCTATGAATTTGATTT-----CAAAATA---------TTATAGT----TCAAAAAACA---AT
s cb4.chrX             13617595 315 - 21540570 TGCACCAAAACCAAGGTCATAC-ATGTC-TA--------------GGCAGAGTGGCTATTAAAATGGCATTTT---ACGGCTGCCTCCCTTCTGGACGTGGTGGT--AAACTGATGTACTATAAAAATTCAATCGGCCTTCTGTCTGGTctgtttttggaattgaatttcaaatgaaTAGAATTT--TGGAGGCGAGTTTTTGGAGAGAA----TGCTACTAGGTT--------------CGGCACGGGAAAATAGTGCAACAAAGAACAACATTGACGGAAATGGGGGAACGATTTTAAT--AGTAAtaggatttttctggaatcaaaAACCAGAGTATTTTATATT----ACAAAATAAT-----
i cb4.chrX             C 0 I 691
s caeRem4.Crem_Contig0  4383377 272 +  4500979 TGCACCAAAACCAAGGTCAGTT-AGGAC-TATCGCTCATAGACATGCCAGGGTGGCTATTAAAATGGCA-TTT---ACGGCTGCC---------GGAGTAGTGGT--AAACTGGTGtacaataaaaattcaatcgTCCGgttgtct-gtctgtttttgaaattgaatttc----------aattt--tggag------TATTGGAAATGA----TGc----aagtt--------------------aaaaaaatagtGCAACAAAGAGCGAATATGACGAGAGCAGA---------TTAGTCAAATTTTAGAAGTGTGCTG----CAAATGC---------GTCTATT----TCAAAACACC-----
i caeRem4.Crem_Contig0 I 204 I 2
s caeSp111.Scaffold629 33087278 251 + 33334924 TGCACCAGAAACAAGGTCATCCTAAGAC-TATCGCCCAGAGGTATAGTAAAGTAGCTATTAAAATGGCA-TTT---ATGGCTGCC---------AGAGTGGTGGT--AAACTGATGTactataaaaattcaattgtcCGGTTGTCT-Gtctgtttttggaattgaatttc----------aa-----tagaG------TTTTAGTGATGA-----------AAGTT---------------------GGGAAATAGTgcaaaagagaacaaaaatgacgaaaataGT---------CTGTT------------------------CAAATGC-----------AAATTATAGGCATGGAATGTGT--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888154 181 -  4147112 TTTTCACGATAAAAAAT----------------------ACATACAGTACAAG---------------G-TTC---ATGGTTAGA---------AGactattatttcaaaataa-gtatTGCAAACAATGTTTTGACGGGTT------TCTGT-----------AATTGC----------AA------AGAG------TATCACT--CCA-----------AAAAT---------------------Taaagattctgaagttttgaattgaaacg---------------------tatt------------------------tgaaaac-----------agatt----tcgtaaaattcgt--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I

a score=-15314.000000
s ce10.chrX             2138673 153 + 17718866 -------TTTAACGGAGGTTCACAAAT------TAAGTAGTTGTACAGTAAACCGAATTATGGGTGGTTGAGGGGAAAAACCAAAAAATGTTAATGAAACCAACAAAATTATTA--------------------AATT----ATCATATACCAGATTTCTTTTAACTAGTTAAAATCACCAAATCCATGG
s caeRem4.Crem_Contig0  4383651 116 +  4500979 tccaaaattt-------gcaaaaaagtgaaaaaccaGAGTTCATATA-----------------------------------------------------TACTACTATTTTAATACCACGTTTTCAGTATTCGGAATAG--GTCAATCAGGTATATTCCT------------ATTTTTACAATCTATGA
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold629 33087529 112 + 33334924 -------TTT----------GATAACT------TCTATGTTCatata----------tcat-----tttttgacga------aagagatttttggaaaccAACTGTTATTTTAA--------------------GATTAG--GTCAATCAAACCAATTCTC------------ATACGGCAAATCTACAG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888335  79 -  4147112 -------ttt---------caatgACT------CATGAACTGTTGTA--------------------------------------------------------TGTTATTTCTA--------------------GATAAATCGTCATACATACGATTTCTT-------------TTTGCCTAATCTACAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I
e cb4.chrX             13617910 691 - 21540570 I

a score=43112.000000
s ce10.chrX             2138826 113 + 17718866 CCACCGAATTGAACTAAATGTCGCCAGAAGGTGTCAAGGTTAGGCCACT-ACTGTGGTC--AGTTCAAT-TC-AGAAATTGAACATTTGCATAGCTTGGGA--------------------TTTCTCAATTTACTTGA
s cb4.chrX             13618601 134 - 21540570 CCACCGCGGCGA--TAATTGTCGCCAGAAGGTGTCAAGGTTAGGTCCCTCAATGTGTTCGTAGTTCAATGACAACCAATCGAACATTTGCATAGTTGACCAGACTATTTTTccgtcat--ttttcatgatctCTTTGA
i cb4.chrX             I 691 C 0
s caeRem4.Crem_Contig0  4383767 132 +  4500979 GCGCCGGAAAAA--CGAATGTCGCCAGAAGGTGTCAAGGTTAGGTCTCT-ATTGTGTTCGGATTTCAAT-ACAAGCGATTGAACATTTGCATAGTTGACCGAATGtttttttCGTCTTTATATTCTTGAtcttttc--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33087641 119 + 33334924 ACGCCGGAAAGA----AATGTCGCCAGAAGGTGTCAAGGTTAGGACCCC-ATTGTGTTCGAATTTCAAT-GCGAGCGATTGAACATTTACATAGCTGATCG-------------CCACTGCTTTCTAGATCTTTtaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888414 133 -  4147112 ACAccggagaaaaatgaatgtcgCCAGAAGGTGTCAAGGTTAGGTCCCT-ATTGTGTTCGAATTTCAAT-ACAAGAAAATGAACGTCTGCATATCCGGACGTCTGCAATATT--TCTCTATTCTCTTGATCTCTcaa-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    44326 948 +   152553 I

a score=145858.000000
s ce10.chrX             2138939 263 + 17718866 AAAGCAAAAAAA------------------AAGGAGCAAAAAGAAGAGCAAAC-AAAAAAAATCACGAAAAAGACAAACGATATCAGTGGGAAAAGTGACGAGA--AGCAA-----GG-----CGAACAACAACTGCTGTG---GAGGAGCAGGAAATGGCTACATGAT----------------------------------GAGAAGAAAAGCAGTGAAAAGTTCAATTCGATTCAAAAAT-----CTTCGCATGTTTTCATCTTTCAGCAG-------------------------AAAAAAAGAGTCAGAGAGAGGA---------GCACT-------TGAGAGATCGGATTTGATCACTCTCGGTTTTTTCC
s cb4.chrX             13618735 299 - 21540570 Cagaaagacaagcagaacaagaagaagaaaaagaaaaaaaagaagaagcatgc-gaaaaaaatcgcgaagaagaCAAACGATATCAGCCGGAAAACTGATGAGA-AGAAAGACGGAGGA---TTCAACAACAACTGTTGTG---GAGGAGCAGGAAATGGCGACATGatatgtgaaaaaaaa---------------------gagaagga---tagtgaaaagttcaattcgattcgaaaattcttgcCTCGCATGTTTTC----TTCAAGGGTCCCT--------------------------CCGAGTAAAAAGAGGA---------GCACT-------TGAGAGATCAGATTTGATCACCCGCGGTTTCTTTC
i cb4.chrX             C 0 I 18
s caeRem4.Crem_Contig0  4383899 261 +  4500979 ------------------------------acgaaaaaaaagagaaaacaagc--aaaaaaatcacgaaaaagacaaaCGATATCAGTTAGAAAACTGATGAGATAGGGAG-----GGA---CCGAACAACAACTGTCGTG---GAGGAGCAGGAAATGGCGACATGAT----------------------------------GAGAAAG----CAGTGAAAAGTTCAATTCGATTCGAAAAT-----CCTCGCATGTTTTC----TTCAAGGGACccttattttcttg----------aaaaagtcaagtgaGGAGAGGA---------GCACT-------TGAGAGATCAGATTTGATCACTCGCAGTTTTTTCC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33087760 262 + 33334924 ac----------------------------gagaaaagaaaaaacaagcaagcagaaaaaaatcacgaaaaagacaaaCGATATCAGTCGGAAAACT-ATTGATGAGATGA-----GGA---GCGAACAACAACTGTTGTG---GAGGAGCAGGAAATGGCGACATGAT----------------------------------GAGAAGC----AAgtgaaaagttcaattcgattcgaaaat------atcgcatgttttc----ttcaaaagaccccttcttttcttc---------aaaaagtcaagTGAGGAGAGGA---------GCACT-------TGAGAGATCAGATTTGATCACCATCGGtttttt--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888547 266 -  4147112 ------------------------------gaagaaacaaagaaaaagcaagcagaaaaaaattacgaaaaagacaaaCGATATCAGTCGGAAAACTCATCAAT--GACGA-----GGG---GTGAACAACAACTGTTGTG---GAGGAGCAGGAAATGGAGACATGAT----------------------------------GAGAAGC----AAGTGAAAAGTTcaattcgattcaaaaat------ctcGCATGTTTTC----TTCAGTGGCCCCCGGtttttttGCTTgtcttgaaaaaagtcaagtgAGGAGAGGA---------GCACT-------TGAGAGATCAGATTTGATCACCCTCGG--TTTT--
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    45274 308 +   152553 aaggaggaaaaaaaga--------------aagaaaaaaacgaaaaaacgaac---agaaaagcaagaaaaagacaaacgatatcatttggaaaaaa-cTGGGT--GTCGA-----GTGACTCCGGATAACAGTTGTTGTATGTGACGAAGAGGGATTTGCGAAATAatgaggagaaaaaaaaagaaaaagaagaagacgaagaagaagc----gGGCGGAAAGTTCAATTCGATTTGAAAAT--------TGCATGTTTTC----ATCGGGAAactcaaaa-----------------aaagaagaaactaAAGAAAGAATGAGATCTTGCTCTGCTTCTCTGATCGATCAGATTTGATCACTCG-----------
i caeJap4.Scaffold4951 I 948 C 0

a score=-7006.000000
s ce10.chrX             2139202 45 + 17718866 GCCTTTTCTCCTCGTTTTTTTGTGTCCTGTCCTATGGAGA-----CTCCG-
s caeRem4.Crem_Contig0  4384160 13 +  4500979 --------------------------------TGAAGAGAATCAA------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33088022 11 + 33334924 -----------------------------tCCTGAAGAGA-----------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2888813 11 -  4147112 -----------------------------TCCTGAAGAGA-----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    45582 33 +   152553 --------TCATCCTGtgtgtatgtttttttttgaggaaa----------a
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13619034 18 - 21540570 I

a score=62434.000000
s ce10.chrX             2139247 143 + 17718866 CGTTAAGAACATGTGTTTCCGCTTCAGATGATG--TCGTATAAAAGTTTGGAAATGAAGTAGG---------------------AGGAGGAGAAAGACTACCGATCAG---ACACCAAACA--AGTATG---ATC--------GA-------TACATGTCGGGA--TATGAGTCAG--AATCACAGGGAATCA
s cb4.chrX             13619052 170 - 21540570 CGTTAAGAACATGTGTTTCCGCTTCAGATGATGTCTCGAATAAAAGTTTGGA-ATGAAGAAGT------------AGGGAGCGGAGGAGG-GTGGGCCTAACGATCAG---ACACCAAATAGTAGCTTGGA-ATtcgaatcggaaaaaaatcttgGTGTCTGAACGTGTGAATCAG-----TAAGGTGAGTCA
i cb4.chrX             I 18 I 13
s caeRem4.Crem_Contig0  4384173 150 +  4500979 TGTTGAGAACATGTGTTTCCGCTTCATATGATG--TCGTATAAAAGTTTGGA-ATATA--------------------------AAGAAG-GGGGACCTAACGATCAG---ACACCAAAAAGTAGCTTGGA-ATTCAAATCGGAA-------TCGATGGCGGAA--TATGAATCAGATATATAAGGTGAGTCA
i caeRem4.Crem_Contig0 C 0 I 112
s caeSp111.Scaffold629 33088033 138 + 33334924 CGTTAAGAACATGTGTTTCCGCTTCAGATGATG--TCGTATAAAAgtttgga--------------------------------agaaagagagggcCTGACGATCAG---ACACCGAAAAGTAGCTTGGA-ATT------GGGA-------TCGGTGTTGGAA--TATGACTCAG--ATATACGTTGATTCA
i caeSp111.Scaffold629 C 0 I 101
s caePb3.Scfld02_0      2888824 133 -  4147112 CGTTAAGAACATGTGTTTCCGCTTCAGATGATG--TCGTATAAAAGTTTGGA--------------------------------ATGAAG-GAGGGCCTAACGATCAG---ACACCAAAAAGTAGCTTGGA-ATT------GGGA-------TCGGTGTCGCAA--TATGAGTCAG--ATCTACGGTGA----
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    45615 148 +   152553 cacTAA-AACATATGTTTCCGCTTCAAAAGAGG--TCGCATAAAAGTTTGGA-AGGATGCCTGGCCATCCTGACTAGATTGAGTTGGAGG-GGAAATATACGGGGCAGTTCACACTAAAAA--CGTTTACatatc--------aa-------tttttgacaaaa--ctttTA---------------------
i caeJap4.Scaffold4951 C 0 C 0

a score=-157.000000
s ce10.chrX             2139390 3 + 17718866 CAT
s caeJap4.Scaffold4951    45763 3 +   152553 GTT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2888957 0 -  4147112 C
e cb4.chrX             13619222 13 - 21540570 I
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-34585.000000
s ce10.chrX             2139393 246 + 17718866 ATATCTATACAGGTCAACAACATGTTGGT------------GATCGA--ATGCAACATTTGAAATAAAAAGAAAAA-----------AAAAGTTAGAAACAGGTGTCGTTCTCATGGTATTAATGCAGCACACGTATACATTTGTTTTGAGAAAGAAGAAGTATTGAATTTGAAGGTGGTTCT--GTAGG-------GAAATTGATTAATGAAATAGCTCTA---------------ATGGG--------CAAAAAGACTCCAATAATGCCAAA-ATGACCAAAATTTAAAAAAGTAAAAAATC
s cb4.chrX             13619235 220 - 21540570 ----TTTTCCGGTTGAGAGAATTAGATTTTAATTAAACTTCGAACGGAAATACagtaattagaa-aaaaaataatc-----------aaaaaataaaaagaggaGATA----------ATCAATG-----------Ttcactaattttga-----atttttcacttatttt-------ctTCCAATTAAGT--TCccgaatttaaaatttgagaaaattt--------------------gg--------gaaaatgtttacaataattttca----aactatttttttcaaaaagcgaaaat-
i cb4.chrX             I 13 C 0
s caePb3.Scfld02_0      2888957 114 -  4147112 ------------TTCAACAATGTATAGTTTGTTCATCAGTTGATCGG--------------------------------------------GACAGAAGGA------------------------------------------------------------TACTTAATTT--------------GTAAG-------GGACATGCTgtccgaaaaac---------------------------------aaaaacatttctaatAGT---------AACACGCCTTTACAAA-----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    45766 258 +   152553 ---------TCGTTCAtagaaatgcgaaaaatgttttaacaAAACAA--ACAGTTCCGCTAAAATGCAAAGAATGCAAGTTATTTCTAAAAATCACAAACA-----AAACcttaaattcttaatt-----------taaaaaaatttcaa-----atcagttttttattgt--------------tcgagcgattcggaaattaattttttaaatatttctatattttttgttactttttggcgttttctgaaatcgtttaaaaaaaaacttcacgaAACCAACATTTTGAGAAGTACGCAATT
i caeJap4.Scaffold4951 C 0 I 63
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-6441.000000
s ce10.chrX             2139639 54 + 17718866 AATACTGAAAACAACATTGTAGGGATGTGATCATGCTA------TAATGGT--ATAGTTTTC---------------------------------------------------------
s cb4.chrX             13619455 99 - 21540570 -------------------ttcgGACGT-TTCAGTTCAAGCAGTTTatgttttctagatttttcaaaactgaaattataATAAGTTTGCTTacagtaaacactctaatattAAGCCTTC
i cb4.chrX             C 0 I 16
s caePb3.Scfld02_0      2889071 21 -  4147112 -----------------------------TTCAGTCCA------TAATGGT------ATTTT---------------------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    46024 63 +   152553 I
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-61.000000
s ce10.chrX             2139693 17 + 17718866 TCAAAAGTGGCAAC------AAC
s caePb3.Scfld02_0      2889092 23 -  4147112 CCATCTGTGGCCACTTcggaaat
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    46024 63 +   152553 I
e cb4.chrX             13619554 16 - 21540570 I
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=823.000000
s ce10.chrX             2139710 16 + 17718866 TCAATAATTGCCATTT
s cb4.chrX             13619570 16 - 21540570 tcaattatctcaattt
i cb4.chrX             I 16 C 0
s caePb3.Scfld02_0      2889115 15 -  4147112 tctgtt-tttttattt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    46024 63 +   152553 I
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-36295.000000
s ce10.chrX             2139726 254 + 17718866 --------------TTGGCTGAA---AATAAAAA-------------------------------GTAAAAAATGTTGAACAGTT------TTACTATGATATTT------------TACTATGATGTTTGAAAAG--------CATTTCTTGA-----------AAGTCAAAA-------CTAAAAAAA-----AATTTTGGGTATTTTTGTGGTTGGAAAATTTACTGAAAAATATAATTTCAGGAGGATTAAAAATTAATGAAAAACTCAAAGAAAA--TGAATCTCCATA-TTGGAAAAAACATACATATGAGAAT----TTTCACATAATTATTAA---------ACATTTGGAATAACTCA
s cb4.chrX             13619586 317 - 21540570 --------------ct-acggaagatattcaaaaactgtcaactgatgaaatgttagtgatactatgacaaacattttatcagttgacaaatttttgttatttttcatggGAATTCAGATGATAGAGCTCAAAGGATTTTATGGTTTTTCACAatacgaaaaaagaaattaaagtgggcaactaaaaagaatagcaatttttgtaatttttg----taaaaaacttttt---------aactcaagaaagtgcaatttttaattcaaaatatttttaaaagttgaa----tagagtcataaaat-------ttcgaaaatattttttttcagttttcgttc---------aaatttt--ttaattcc
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2889130 245 -  4147112 --------------tt-accgaa---actcagaa--tttcaac-------ataCCAGCG------TTACAAACAAAATATCAcct------tttttcttatattt-----------------------tcaaaaaa--------cattccacaata---------aattttcag--------caaaaagaCTGGAAA-------AACTGTTG----CGAAAGAGTTTTCG---AACGGAAATGAAAAGGATGAGGATATCAATCACAAATTTAATCCAAG--TGAA----CATA-TTGTAAAAT------------GAGTCATATTTTCCGAATTTAGTACCgtaaaacaaaatatg--acaAGACa
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951    46087 140 +   152553 ttggcgacgagagagt-gcagaa---aattgaga--------------------gagcg------tggccaat---------gtt------tcgctctgatttct-----------------------ctgaatct--------cactcca--------------aatgca---------------------------------------------tgcgcagttcactg----------------------------------------------------tgcg-------a-ttggagc--------------gagt----tttcagcgttttatacc---------gagt-----ataactga
i caeJap4.Scaffold4951 I 63 C 0
e caeSp111.Scaffold629 33088171 101 + 33334924 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-399.000000
s ce10.chrX             2139980  6 + 17718866 ------AAAATT
s cb4.chrX             13619903  6 - 21540570 ------aaaatt
i cb4.chrX             C 0 I 48
s caeSp111.Scaffold629 33088272  6 + 33334924 ------AAaatt
i caeSp111.Scaffold629 I 101 C 0
s caePb3.Scfld02_0      2889377  6 -  4147112 ------cctatt
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold4951    46227 11 +   152553 acaacaataat-
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=-3191.000000
s ce10.chrX             2139986 17 + 17718866 GAAA------------AAAAATGTTG---aaa
s caeSp111.Scaffold629 33088278 23 + 33334924 gaaa------gctcttgaatattttc---aaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2889383 32 -  4147112 gaaaaatcatattctggaatcttttagtgaaa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    46238 12 +   152553 aaaa------------aaaaataa--------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13619909 48 - 21540570 I
e caeRem4.Crem_Contig0  4384323 112 +  4500979 I

a score=1060.000000
s ce10.chrX             2140003 3 + 17718866 aaa
s caeRem4.Crem_Contig0  4384435 2 +  4500979 -AA
i caeRem4.Crem_Contig0 I 112 I 1
s caeSp111.Scaffold629 33088301 3 + 33334924 gca
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2889415 3 -  4147112 aaa
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold4951    46250 3 +   152553 aaa
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13619909 48 - 21540570 I

a score=-32705.000000
s ce10.chrX             2140006 67 + 17718866 taa----------------ataatt---ataagaataaaatCACAG-----------------TAAAA--------------AACACATTGCCTTC--AAACAAATATTCC----TTTGTTTT-----
s cb4.chrX             13619957 60 - 21540570 TAC----------------ATATTT---TGAATcataaat----tg-----------------tgaaa--------------aaagatTCTCTAAC--AAAAAAGAGCTAT----TTG---TA-----
i cb4.chrX             I 48 C 0
s caeRem4.Crem_Contig0  4384438 74 +  4500979 TAA----------------ATacttatcaaaataaaaaat----ag-----------------taaaatggGG---------AAAGCGTACccacttgaaaaaaaaacttcactGCTG---TT-----
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33088308 68 + 33334924 tga----------------aaagtt-------ctacaaaa----aaacaagtccat-----ttcagaa--------------aaaaagaattcaaa--acaaaaaaaactt----ttt---tg-----
i caeSp111.Scaffold629 I 4 C 0
s caePb3.Scfld02_0      2889422 69 -  4147112 taagcttgcgttttttccgaaagtt----tacttacaaaa----ag-----------------cagaa--------------aataag----caac--aaaaaagaaagtt----ttt----------
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951    46253 59 +   152553 ---------------------------------------------------tccgtGATCCCATGGAATGccaccaatttttaaaaagtattcATC-----------TTCT----ctt---ttgtttt
i caeJap4.Scaffold4951 C 0 I 31

a score=15619.000000
s ce10.chrX             2140073 36 + 17718866 ACGATTGGCTACTAA-----CTACTAGGATTATTGTTGA--AC
s cb4.chrX             13620017 41 - 21540570 GTGACTGGTTACTAACCAACCCACACGGATTATTGTTTG--AG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4384512 40 +  4500979 GTGACTGGCAACTAG-CAAACTACACGGATTATTGCTTG--AG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33088376 42 + 33334924 gtgTCTGGTAACTAA-CTCACAACACGGattattgtttgaaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2889491 37 -  4147112 ---gttggTTACTAA-CTAACTACACGGATCATTGTTTG--AG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    46312 31 +   152553 I

a score=37243.000000
s ce10.chrX             2140109 508 + 17718866  
s cb4.chrX             13620058 547 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4384552 573 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33088418 545 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2889528 562 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    46343 676 +   152553  
i caeJap4.Scaffold4951 I 31 I 33

a score=15713.000000
s ce10.chrX             2140617 39 + 17718866 TTTGAGATGGAATTATGATGATCCGTCGGGGGAGAG--GAT
s cb4.chrX             13620605 33 - 21540570 TTTGAAAAGGATTTATGATAATCTT------AAGAG--GTT
i cb4.chrX             C 0 I 93
s caeRem4.Crem_Contig0  4385125 33 +  4500979 TTTGACAGGGATTTATGATAATCTT------GGGAG--GAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33088963 35 + 33334924 TTTGAAAAGGATTTATGATAATCTCTA----GGAAG--GAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890090 37 -  4147112 TTTGAGGAGGATTTATGATAATCTTCC----GGGGGTAGAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47019 33 +   152553 I

a score=680.000000
s ce10.chrX             2140656 3 + 17718866 CAA
s caeRem4.Crem_Contig0  4385158 3 +  4500979 CAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33088998 3 + 33334924 TGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890127 3 -  4147112 TGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47019 33 +   152553 I
e cb4.chrX             13620638 93 - 21540570 I

a score=-1340.000000
s ce10.chrX             2140659 6 + 17718866 TTTGGT--
s caeRem4.Crem_Contig0  4385161 6 +  4500979 ATCGAC--
i caeRem4.Crem_Contig0 C 0 I 35
s caeSp111.Scaffold629 33089001 6 + 33334924 CTCAAA--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890130 6 -  4147112 CTCAAT--
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    47052 8 +   152553 TTTGGAAC
i caeJap4.Scaffold4951 I 33 C 0
e cb4.chrX             13620638 93 - 21540570 I

a score=973.000000
s ce10.chrX             2140665 10 + 17718866 GTGAC-----TCGTT
s caeSp111.Scaffold629 33089007 10 + 33334924 TTGAC-----TCTCC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890136 15 -  4147112 GTGACTCTTGTCTCC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    47060 10 +   152553 GTGAC-----ACGTT
i caeJap4.Scaffold4951 C 0 I 38
e cb4.chrX             13620638 93 - 21540570 I
e caeRem4.Crem_Contig0  4385167 35 +  4500979 I

a score=-580.000000
s ce10.chrX             2140675 23 + 17718866 AATTACTATTAATGGTCGTTTTT
s caeSp111.Scaffold629 33089017 23 + 33334924 GATAGAAAATGAGGGCAATCGGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890151 23 -  4147112 GAATCGGAATAGGGACAATTGAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47070 38 +   152553 I
e cb4.chrX             13620638 93 - 21540570 I
e caeRem4.Crem_Contig0  4385167 35 +  4500979 I

a score=-300.000000
s ce10.chrX             2140698 1 + 17718866 C
s caeSp111.Scaffold629 33089040 1 + 33334924 G
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2890174 1 -  4147112 G
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951    47108 1 +   152553 c
i caeJap4.Scaffold4951 I 38 C 0
e cb4.chrX             13620638 93 - 21540570 I
e caeRem4.Crem_Contig0  4385167 35 +  4500979 I

a score=-4179.000000
s ce10.chrX             2140699 21 + 17718866 AGAAAAGTA------------GGTCCGA--------TAGAA
s caeRem4.Crem_Contig0  4385202 41 +  4500979 agaaaaaccTGGGCGGATCATGGTCCCGAATTACATCCGTA
i caeRem4.Crem_Contig0 I 35 I 11
s caeSp111.Scaffold629 33089043 33 + 33334924 AAATGAATCGGGG--------GGTCCAGGACCACATTAGAA
i caeSp111.Scaffold629 I 2 I 9
s caePb3.Scfld02_0      2890177 41 -  4147112 AGATGAGATGCGGGGAATAATGGTTCTGGACCACATTAGAA
i caePb3.Scfld02_0     I 2 I 9
s caeJap4.Scaffold4951    47109 21 +   152553 --agaAACTCAGC--------TTTCACGGAT----------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13620638 93 - 21540570 I

a score=155114.000000
s ce10.chrX             2140720 206 + 17718866 TCTCGATTTCACGTGAAAAAAAAACCG-CAAAAAAAT-GGGGGCGA-GTA--GGGGCCGGAG-------------------GACACGAA---GAAGAGGGAAATTTTGTCT-ATGCGCTGTGGTCACTAG--TGATCT--CTACGTCTCTTTAGTGCCCTGTCCCTCAA------TTCGCACATCTTTGTGACACACACTACTTCTCATCGATTTCTAGTTTTTTTCGCCTACT-CCAAATGGTG
s cb4.chrX             13620731 234 - 21540570 CCTCGATTACACGT--AAAAAGAAACGCC--AAAAAC-GGGGGTGAGGGAT-GAGGGCACCGAGGATGAGGGCCGAGAGAAGacaagaagacgaagaagcgAATTTTGTCT-ACGCGCTGTGGTCACTAGTCATCTCT--CTGTGTCTCACGAGTGCCCTGTCCCTCGAATTTTCTTCGCACATCTTTGTG--ACACACTACTTCTCAtcgatttctagtttttttcctttcctcCCAAATGGTG
i cb4.chrX             I 93 C 0
s caeRem4.Crem_Contig0  4385254 197 +  4500979 CCTCGATTACACGT---AAAAGAAGCG-C--AAAAAT-GGGGGCGA-AGAT-GGGGCCGCCg------------------agacaagaa---gaagaggcAAATTTTGTCT-ATGCGCTGTGGTCACTAG--ATGTAT--CTGGGTCTCTTGAGTGCCCTCTCCCTCAA------TTCGCACATCTTTGTG--ACACACTACTTCTCATcgatttctagttttttttctt-----ccaaatggTG
i caeRem4.Crem_Contig0 I 11 C 0
s caeSp111.Scaffold629 33089085 196 + 33334924 CCTCGATTACACGT---AAAAGAAGCG-C--AAAAATGGGGGGCGA-AGATGGGGGCCGCCg------------------agacaagaa---gaagaggcaAATTTTGTCT-ATGCGCTGTGGTCACTAG--ATATCT--CTGTGTCTCTTGAGTGCCCTGTCCCTCAA------TTCGCACATCTCTGTG--ACACACTACTTCTCATcgatttctagtttttctt--------ccaaatggtG
i caeSp111.Scaffold629 I 9 C 0
s caePb3.Scfld02_0      2890227 194 -  4147112 CCTCGATTACACGT---AAAAGAAGCG-C--AAAAAT-GGGGGCGA-AGAT-GGGGCCGCCg------------------agacaagaa---gaagaggcaAATTTTGTCT-ATGCGCTGTGGTCACTAG--ATATCT--CTGTGTCTCTTGAGTGCCCTGTCCCTCAA------TTCGCACATCTTTGTG--ACACACTACTTCCCATcgatttctagtttttctt--------ccaaatggTG
i caePb3.Scfld02_0     I 9 C 0
s caeJap4.Scaffold4951    47130 187 +   152553 CTTCAATTACACACAAATAACCAGGAG-C--AAAAAT-AGACTAGA-AGTC-TGTGGCGCAA-------------------------AA---GCAGAAGCACATTTTCTATGATGCGTTGT-----------TTCTCTGCCTGGGTCTCTGAAGTGCCCGGCCCCTCAA------CTCGCACAATTTTGTGACACACACTACTTCTCATCGATTTCTAGTTTTTCTTC-------ACAAATGGTG
i caeJap4.Scaffold4951 C 0 I 909

a score=-23905.000000
s ce10.chrX             2140926  99 + 17718866 GCGGGCGG-CG-------------------AAGGAGATGGAATCTGGATTGG-ATCTTAA--------------------------------------AATTCAGGG-CTCTTTCTCT---------TGCGTTATTGGTCCCAATT----TTTTTTGCAAAATTATTCAAAC-
s cb4.chrX             13620965 122 - 21540570 TCAA-CGA-CGGGTGCAGACCCTCTTCCGaaaaaaaCACGAAGTGAAATTAGCATcttcaattctatt-------------ttttgtctGGTTTTGCACACAAGCGC-GTTTTCTTCt---------------ctaaacttcaaac----tttc----------------aac
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4385451 102 +  4500979 TCAACCGA-CGGGTGC--------------ACAAAAAACGGAGTTAAATTAGCATCTTCA------------------------TGTC---TTTTACACATCCATGTAATTGGCTTCT---------------ATTCATGTCAGTT----CTTT----------GTTAAAAAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33089281  78 + 33334924 TCAA-CGACCGGGAGCAGcggacg------aaaaaaattcaagggCAATTAGCATgtcattc--------------------------------------------t-atttttgcat--------------------------------tttt----------attcatat-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890421 141 -  4147112 TCAA-CGA-CGGgtgttgc-----------aaaaaaag--aagtgaaattaGCATGTCACCctcttttttgaaccattcAATTTCGTC----TTCATTCATATAAGT-ATTTTCGTCTCGAATATATTGAG-AATTAGCTGCGATCTCTATCTT----------ATTTACAA-
i caePb3.Scfld02_0     C 0 I 104
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-8972.000000
s ce10.chrX             2141025 70 + 17718866 ------------------TCAGAATAATTCGTAACTTGAAAATGGGGattattaaatatttaatc------tttaaaaaaattCCTTTTAAAAG----
s cb4.chrX             13621087 74 - 21540570 ------------------tCAAAATAGGCAGCTATTTTTA------TATTTGTCTATTTATGACGACGTGGTGAGCAGCAATTACTTTTATATTTAAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4385553 57 +  4500979 ------------------GGGAAATAAGCTGCAATTCTT---------TTCTCGTATTTTCCAT-------TGAATGGATACTATTCCTGT-------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33089359 51 + 33334924 cCATTCCTCTTCAAAACATCTAAATAAGCtacgatttct---------ttttt------------------tcaaaag--------------------
i caeSp111.Scaffold629 C 0 I 53
e caePb3.Scfld02_0      2890562 104 -  4147112 I
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-120.000000
s ce10.chrX             2141095 17 + 17718866 TGGAGTTGTTAAAATTG
s cb4.chrX             13621161 17 - 21540570 TGTGTTGATCAGAATTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4385610  9 +  4500979 --------CCTGAATGC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2890562 104 -  4147112 I
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeSp111.Scaffold629 33089410 53 + 33334924 I

a score=-9386.000000
s ce10.chrX             2141112 55 + 17718866 -TTAAAAAACTGCa-------------aaaaaagattttaaatttttttatttagta------aa------------aaaaaataGC---------
s cb4.chrX             13621178 68 - 21540570 ACCAGAAAACTTGAGTAATCATCGGACACAAGGATTAAT----GATATCAGTGTGAA---ACAAA------------ACCAGATAAA---------
i cb4.chrX             C 0 I 149
s caeRem4.Crem_Contig0  4385619 69 +  4500979 ACTTGAGAGTTTAA---------------AAGTGTTATTA---GCTATCATTTTATATCTACGAATAGTTTTTCTTCAGTAAGTAAC---------
i caeRem4.Crem_Contig0 C 0 I 13
s caePb3.Scfld02_0      2890666 86 -  4147112 -CTCAAACACTTCA---------GATGAAAAGGGATATTGAACACAACCAATTGAGAAATgggataattttttgttgaaaggaaaaaaagcttGGC
i caePb3.Scfld02_0     I 104 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeSp111.Scaffold629 33089410 53 + 33334924 I

a score=-11854.000000
s ce10.chrX             2141167 94 + 17718866 AATTACTGTTTTTTGGCTATTTTTTGGGAAAACTATAGCATTGCTGTATTTTCGAATCT---------Ctaaaatatttgaaacataaataaatttta-----aaaa-----------a
s caeRem4.Crem_Contig0  4385701 57 +  4500979 -------------AA-----CCACTGgaac--------------------------------------tggaaattttcgaagatttaAAAAGATTTA-----CGACTTGGCAAGTGA-
i caeRem4.Crem_Contig0 I 13 I 2
s caeSp111.Scaffold629 33089463 72 + 33334924 Agctataattttttg-----ttgtcgaGAGA---------------TCTTTTC-ACTTA---------TTCCAATCTTCCAACGTCGAGTGACATTTA-----gaac------------
i caeSp111.Scaffold629 I 53 C 0
s caePb3.Scfld02_0      2890752 78 -  4147112 -------AAATCTTA-----CTTCTGAAAAc---------------tagtttc-attcaaaaactacgttgaaatatttgaaaattactttA-ATTTATATccgaac------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I
e cb4.chrX             13621246 149 - 21540570 I

a score=-34017.000000
s ce10.chrX             2141261 134 + 17718866 tGCGAAAAAGA------------ATAA--------AATTATTTTTG---ATCA---GTAACTTC------------------CT-------------AAAAAGTGTCAAAAATTACGTAATTAC------------------atttttttaaaacaaaatataaaattttaaaaa--CCATTTTCGAAAAGTTTTTTATGGCCATTTTGTC
s cb4.chrX             13621395 109 - 21540570 ---TCGGAAGA------------AGTA--------AGATTTTTTCT---CAAGGATacattttc------------------ca-------------gaatgaaAGGAGAAATCGC--------------------------TTACtatgaaaataaaa----------gaaaaaagtcatGATCAGCAGGTGATTTTTGGc---------
i cb4.chrX             I 149 C 0
s caeRem4.Crem_Contig0  4385760 107 +  4500979 ---TATAAAGG------------TGTAGCGAAACTAGCTATCCTCC---TGAG---ACAGATTT------------------CG-------------TAATGA----------------------------------------TAATACGCATTTAAAC----------CGAAAA--TCATCCCAAGAGAATGTTTTGTTGTTCGTTTATC
i caeRem4.Crem_Contig0 I 2 I 38
s caeSp111.Scaffold629 33089535 127 + 33334924 -----agagaa------------aaca--------aatgtcTCTTC---CATA---GAATGTTC------------TCATTTCA-------GCTGgataacaaaaagaaaaacaatacatGTTCCTAGGAGATTATTCAGCGATATTtctaa---atat----------caaaaa--tcatatcAAGATATT-------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890830 167 -  4147112 -----tgaaaactgaactagggcatca--------aacttttttcagcgtAAA---AAATCTTCGTTTATAAAACTTCACTTCATGCGAACTTTTGAGAACACAAATCGAAACCAAATGCAAAACTCCatgaacttttagaaacttttcgaatgtAGAA----------TGAaca--ttatttcgaaaacttatC----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-11557.000000
s ce10.chrX             2141395 66 + 17718866 ACTATAGGAGGCTAATCAAC-----------------------TTTTAATTGTA---TATTGCAGGAATATACAATTGAGTTGCATTAAATG
s cb4.chrX             13621504 35 - 21540570 ---gcc----gaaattcaga----------------------------atcagaTGGGCTTG----ATCATAAG------------------
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold629 33089662 37 + 33334924 --TCTC----GTTTATCAAA------------------CAGTGTTCCGATGAGA------------AATATAA-------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2890997 86 -  4147112 ACTATC----AtcaattaaaacaaaaaaaaacaaaacttaatGTTTTCGTAAGA-GATCTTTCATCAATATAAGACTCTtctaaatcaaaa-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeRem4.Crem_Contig0  4385867 38 +  4500979 I

a score=-18572.000000
s ce10.chrX             2141461  84 + 17718866 AGAGAATGAAGTTTGtaatt-------------------------------------------ttttct-------ttaaaaaaaagttttt------taaaaatattttttGACGAAAAAGTGAAAATTAAAAAAATAT
s cb4.chrX             13621540  78 - 21540570 GGGGAATGAAA----------------------------------------------------CTGATGAAActgtttttaaataaattttt------acacTGTTTTCAT----ATATAACAATGATTTATGTACATAT
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4385905  71 +  4500979 gaaaaagaaaa----------------------------------------------------atgtta-------ttatGAAAAAGGTTTC------TCATATTTCTTAT----GCAAAACAGAAGGTCACTACAACGT
i caeRem4.Crem_Contig0 I 38 I 98
s caeSp111.Scaffold629 33089699  61 + 33334924 ---------------------------------------------------------------ACGTCA-------TAGCAAATGATATAATAACAA-AaaggtttctttttctcgctAAACACAGAACAAA--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2891083 116 -  4147112 -----atcaaa-ccgAGATTGATGTCGTTCGTTTATCAAACACTGTTCCAATATGAGAGATTGACGTcg-------tcacaaaaaatgttatgagAAGAAAGGGTTCTCATT---GCTAATCGGAAGGTTAT--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-11236.000000
s ce10.chrX             2141545 115 + 17718866 ATAGTGTAAACGGCCAAA-ACACTTAAAAAAACATTAAAAACA--TCATTAAAGTCATGACAAATTTTTAACAATAAAATCGAAAAGTTTTGAG--TGATAAAAAAATTCAAAAAAGAAT----------------
s cb4.chrX             13621618  99 - 21540570 -AACAACAACTGGTTTTG-ACACC-----AATCGTTG--------ATATTTGTGTGATATTAATTTT------GTAAGCTAGAGAAACCTAGAAACTGATAATTAAAAGGGAAGAAGTAC----------------
i cb4.chrX             C 0 I 7
s caeSp111.Scaffold629 33089760 108 + 33334924 -----CCAGTAGTCTTCA---GCC-----AACTATTTGA------ATGTTGAagtgaaaatattt---------gaaattggaaatatacagaaatgaataattgatCAACGGAAAGCAGGTGATAAATTTCAAGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2891199 113 -  4147112 -----ATAAACGACCCTACATGCC-----GGTTGTATGAGGAAGCATAGCAACACGGATATAT-------------ATTTGGAAACACATCGAAATGAATAATTGATCGAGATGTAGCAGGTGATAAATCTTGAGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeRem4.Crem_Contig0  4385976  98 +  4500979 I

a score=-73718.000000
s ce10.chrX             2141660 323 + 17718866  
s cb4.chrX             13621724 355 - 21540570  
i cb4.chrX             I 7 C 0
s caeRem4.Crem_Contig0  4386074 198 +  4500979  
i caeRem4.Crem_Contig0 I 98 I 31
s caeSp111.Scaffold629 33089868 283 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2891312 445 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-12667.000000
s ce10.chrX             2141983  56 + 17718866 AATACCAAAAATAT-TTTTTATTG--GAAAAGTGAC------------------------------------------------------------------------------------------GTTGAAAATATTGAAAACGGAAT--
s cb4.chrX             13622079  61 - 21540570 agtctggaaaaaat-tttatattaaaGCTGAATGATATTTTC------------------------------------------------------------------------------------ACTGAGGTAA---AACCCACAAG--
i cb4.chrX             C 0 I 2
s caeSp111.Scaffold629 33090151  55 + 33334924 -----------aat-ttttgattaatgGCTACTGGATTAATT------------------------------------------------------------------------------------ATTTCAATAATATAACTAATAATCC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2891757 140 -  4147112 -----------AATACTTCCACTGGTGATAACtgctttgattttcaaaagttattactagttgcaaaaacttgaaactagGATTTTCACATTTGACAGGTTGACTTTCCGTTTGTTTTACACAGAAACTtaaaaaatgcaacaaaaaaact
i caePb3.Scfld02_0     C 0 I 21
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeRem4.Crem_Contig0  4386272  31 +  4500979 I

a score=-34026.000000
s ce10.chrX             2142039  90 + 17718866 AAC----GTCATGGAAAAACAACTAA---CTAAAAATTTACTTTATTTCCTCACAAAATTACAATTTCG----------GGTGttaattta-ttattta--tttatg------------------aaa--------------------------------------
s cb4.chrX             13622142 123 - 21540570 Aac----tatggaaaaaaaactctgaattctgataatttaaattttttcaaaaaaaagt---tgtttcattttccgaaaga--caaataga-aaaccaa--aatttgccAAGACTGAAAATAGTAGACttagaaa-------------------------------
i cb4.chrX             I 2 I 8
s caeRem4.Crem_Contig0  4386303  70 +  4500979 AGCGTCTTATGTAG---------------TTAACAATGta---cttttcacaa-----------tttca---------------gattatt-taatcaa--tttttg------------------gactCTGAAA-------------------------------
i caeRem4.Crem_Contig0 I 31 I 41
s caeSp111.Scaffold629 33090206  83 + 33334924 ---------------AAAACCTGTGAACTCGAACAAATTTATTCTGCTTCTACCGCACT---AAT------------------CAAATATTATCAACGA----TTTG------------------CAATCTAGACGT-------------------------CAAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2891918 133 -  4147112 aac----gttttgaaaaaacacttgAGCTCAAACctgactttcttttttctagcaaaaa---agtggaa-------aaagttctgaataaT-TCAACAACTTCTTTT------------------CACTCACCATGTACTTGgtgttttttcttaaattatAAAAA
i caePb3.Scfld02_0     I 21 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=-9796.000000
s ce10.chrX             2142129 51 + 17718866 atttCTG------TTC--AGCTAATTTTC----CCCATCATTCTCAAGGAAATGAATAATCTA---
s cb4.chrX             13622273 46 - 21540570 -------------att--tgcaaatttcaat--gttttcggTTCGC---TTCGCATTGGAAATAAA
i cb4.chrX             I 8 C 0
s caeSp111.Scaffold629 33090289 45 + 33334924 ----CAG------CTT----CAAAACTTA----GCAGCCGTTCCTCAGAATCTCATTAGGATT---
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2892051 54 -  4147112 ----CAGGGAACACTCCAAGCAAAACTGAATACGCCATCATCCTTCAAGATC-----AACGTT---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I
e caeRem4.Crem_Contig0  4386373 41 +  4500979 I

a score=-2501.000000
s ce10.chrX             2142180 23 + 17718866 ACGCTTCCG--ATCCTGGACAGAAC
s cb4.chrX             13622319 21 - 21540570 --ACCCCAA--ATTTGAGAAGTAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4386414 23 +  4500979 TCGTCTCAT--ATTCCTGACAACAC
i caeRem4.Crem_Contig0 I 41 C 0
s caeSp111.Scaffold629 33090334 22 + 33334924 -AGTTTCCC--ACTATtgtcaaaat
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2892105 24 -  4147112 -AGCTTAGAGGACTCTCGGTTAAAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    47317 909 +   152553 I

a score=97528.000000
s ce10.chrX             2142203 102 + 17718866 AAACGAATCGAATATCAA-C------GGGAGACGCTGACATTAATCAAATTTATGCTAATTTTCGAGGTTGAACTATTTGTTCGGT---TGCAACGAGCTAATCGGTT-AGAA
s cb4.chrX             13622340 110 - 21540570 GAACAAATTGAATATCAA-TAGGAGGAGGAAACGCTGACATTAATCAAATTTATGCTAATTTT-GTCGTTGAACTATTTGTTTGGCGTTTGCAACGAGCTAATCGGTC-CGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4386437 101 +  4500979 GAAGAAACCGAATATCAA-T------AGGAAACGCTGACATTAATCAAATTTATGCTAATTTT-GTGGCTGAACTATTTGTTTGGC---CGCAACGAGCTAATCGGTT-CGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33090356 102 + 33334924 gaagaattcgaaTATCAA-T------AGGAAACGCTGACATTAATCAAATTTATGCTAATTTT-GTCGTTGAACTATTTGTTTAGT---TGGAAAGAGCTAATCGGTTCCGAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2892129 101 -  4147112 GAGAAAAGCGAATATCAA-T------AGGAAACGCTGACATTAATCAAATTTATGCTAATTTT-GTCGTTGAACTATTTGTTTGGT---TGCAACGAGCTAATCGGTT-CGAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    48226  98 +   152553 AAAAGAATGAAATTCCAACT------GGGAAGCGCTGACATTAATCAAATTTATGCTAATTTT-G----CGCACTATTCGTTCGTC---TGCAACGAGCTAATCGGTT-TGGA
i caeJap4.Scaffold4951 I 909 I 1566

a score=61366.000000
s ce10.chrX             2142305 201 + 17718866 C-GGCTCT------------------------------AGCGAATTGACGTGTGTGTGTGGTTGTGTGTGTATATGGAATGTAAATTGGGTAGCCTA-----TGTGCGA-C--CAGAAAAACGACAAAACGAAT--AGTAACAACAAT-----GGCGGGTTCTCT--------GGGCCCCCCGTATATG----TGGCCGCCGAGCGCAATTCGAATGTTAAACTTCAT--------------TTT------CTGTTTTTATTGTTTTTTGATTTCTTAT
s cb4.chrX             13622450 249 - 21540570 CGGGCgctcctctctttttcttctctttcattCAATGGCGTGGTTTGACGT---------GTTATGTGTGCGTATGGAATGTAAATTGG---GGCTA---TGAGAGCGA-CCATACAAAACCACCGAAAAGAAAATAGTAGTAACACAGCATCAGC-CtttttttCGAGACTGGG--ACCCCGTATATGTGAATAAATACC---CACAATT------TCAAACTGCATCTGCTCGCCT--ctttttattgcttttttttcttcttttttgattttttat
i cb4.chrX             C 0 I 1585
s caeRem4.Crem_Contig0  4386538 207 +  4500979 C-GGCGCTTCAGT--------------------AGCAGCGTGGTTTTACGT---------GTTATGTGTGCGTATGGAATGTAAATTGGCCAGCGTA---TGGGAG-GC-CAACGCAAAAACGACGA---------AGTAGTAACAAA-----AGC-GGTTTTCT--------GG--CCCCCATATATG----TAGCTACCGAACACAATTTGAATGTAAAATTGCATCTGCTCGCTt--cgttt------ctatttttattgttttttgatttcttcc
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33090458 221 + 33334924 C-GGCTCTCCC----------------------AGTAGCGCAGTTTGACGT---------GTTATGTGTGCGTATGTAATGTAAATTGGCCGGGGGATTGTGTGTGCGACCAccacaaaaacgaaaaaaagaagcgagTAGTAACAAA-----AGC-GGTTTTGT--------GG--CCCCCGTATATG----TGGCGGCCGAACTCAATTTAAATGTTAAATTACATCTGcttttctcccattt------tttttcgcattgttttttgatttcttac
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2892230 195 -  4147112 C-GGCGCCCCC------------------------CAACGCGGTTTGACGT---------GTTATGTGTGCGTATGGAATGTAAATTGGCGAGAGAA----ATGTGCGA-CACCACAATA--GAAA----------AGTACTAACAAA-----AGC-GGTTTTCT--------GG--CCCCCATATATG----CAACTACTGAACACAATTTGAATGTTAAATTGCATCTGct-------cgctt------cttttttcattgttttttgatttcttct
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I

a score=-4465.000000
s ce10.chrX             2142506 47 + 17718866 ACAATCGTTTTAAAGATGATATGATTTTCGG---TGAATG-----------------CTTAAAACAA
s caeRem4.Crem_Contig0  4386745 61 +  4500979 ------atATCCACTTACACGTAAACACGGATACACAGCCACATCATTTTTCCTACGATCAAGAAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33090679 47 + 33334924 ACAGCCGCATCAGTTCGCACATGAATATTGA---GCAGCT-----------------Ggcgaaacag
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2892425 44 -  4147112 tttactGAATCAATTTTCACACAAACTGGAA---GTAAc--------------------caaaacaa
i caePb3.Scfld02_0     C 0 I 196
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I

a score=-6152.000000
s ce10.chrX             2142553 148 + 17718866 -AAACCTACATGAATTATT----------------------------------------AAAAAGTGGAATCACGATTAAA-----AAACATAACAAAACAAACAAGGCAGTATCTGTGGAGTACGACGAGCAATAAAATGTTCCAATTTGGTGATTTACTGATAAAAGATAA-------------------GAACATTTTGAACT----AACACAT---
s caeRem4.Crem_Contig0  4386806 170 +  4500979 GGAGTGAAAAAACATAATT----------------------------GGAGT--------AAGAATGACCACAAAACCAGA---GGGTTTATAAT-GAGTACATAACGTGGAGGTCTCGGAAAACAATTGATAATA---------AAGTATAACGAACAATGTAAAGGAATAAGGCAGTTGATAA-CAAAgtaaacagtttttgatgggaaactaataaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33090727 207 + 33334924 -aaatagaaaggAATAGTTTTCAAGACTAATAAGATGTTCAATATGGGGGGTCTTAAGAAAGAAGTGATAACAAGAATACATAGGAACATGTAACAGAACAAATAGTATCAGG----TGGGAAACAACTAATAATAGGCGGTTGTAGGTTTGTTACTTTGTGATAACAGATAA-TCATTTGATAATTACGGTCAATATTGTATGCT----CACCCGT---
i caeSp111.Scaffold629 I 1 C 0
e caePb3.Scfld02_0      2892469 196 -  4147112 I
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I

a score=-13222.000000
s ce10.chrX             2142701  83 + 17718866 AATA---TGATAC---TATAT--TGTTATTAGTAAAAGA-CAATGAT----------GTTTAAAACAACTGTAAT-----TGCTTAAAA-----------TTATTAAAAATCTTATAT
s caeRem4.Crem_Contig0  4386976 110 +  4500979 aatataGAGTTTTGGATAGAT-ATCATATTGATAAAAGA-TAACAATCTGTGT----AATAAAAACTCGAGAgtt--ataaattcaaaaacacaatttgTTAAATCAACCtctggaag
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33090934  94 + 33334924 ---------AATCAGGTATCT-CTTGTATC-ATAAATGTAGAACGAGTTGTACA---GATCAAAGAAACGgtaaacaagaaaattagaGA----------TAAATTGAGAACTTGACA
i caeSp111.Scaffold629 C 0 I 147
s caePb3.Scfld02_0      2892665  97 -  4147112 gata---agatACATGTATTTGCCTGCAACGGTCAATGT--------TTGTGTGCTTAATAAATGCTACAGCGTTCATGTTATACAAAAG----------TGATCTAAATATTGGTGA
i caePb3.Scfld02_0     I 196 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I

a score=-5158.000000
s ce10.chrX             2142784 106 + 17718866 ---------AAAG-----------------------GTACTGCGAAAATAGTCTTTGAATTTTTTAAAATTTTGTTTCAAAAAGTGGTGGAAATACATATTTGAA--ACATAAGTAGACTATGAACTTTTGAATaatttt------------
s caeRem4.Crem_Contig0  4387086 104 +  4500979 ---------aaag-------------------------------aaaataa-----gaaaatttgaggaactaagaaagaaaaaga--ggaaatagCCAATGAAACGCAATAATTTAGAAACCACATGTGAAAGGGCATTTCAAC-CAGTGT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2892762 138 -  4147112 TAAGGTGGCAAAGATAGTCGTTAACTCATTATTTTAGCAGTGTAACAATAG-----GAATCGTTGAGAATTTTCCTTCGGAAAACA--GGAAGcagatacgaaaaaaaaacaaatcaaatatagc-----aaaaattactgaaataCAGT--
i caePb3.Scfld02_0     C 0 I 2
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I
e caeSp111.Scaffold629 33091028 147 + 33334924 I

a score=-12873.000000
s ce10.chrX             2142890 106 + 17718866 --tttattgacgactttcacaaaa-----gtga---caaa------aactaagtagtttta------ttttt-----------------------------ggactgtc-------aataaaaaaatttcaaaaatttgca--------------gttttttttttgaaaagttttat
s caeRem4.Crem_Contig0  4387190 125 +  4500979 TTTACGACTACTATCTTCCTCGGAGGACTGTGGAACAAAAGTACAGAAACATGAAATATTA------CACTT-----------------------------GAGGGGTCATGAccgaacagaaaaataaaaactgtttctt--------------GTGTATTGCAGGG----TTGCAT
i caeRem4.Crem_Contig0 C 0 I 76
s caeSp111.Scaffold629 33091175 109 + 33334924 --TTTAACGACGAACCTCTTCCAA----AATGG---AGAAGTACAGAATCATAAAACATTA------CACTT---------------------------ATAGGGGGTC-----------GAACAGGAATAAACATTTATA---------------TGCGTTTTAAGAAAT-TTATAT
i caeSp111.Scaffold629 I 147 C 0
s caePb3.Scfld02_0      2892902 165 -  4147112 --CCAAAATACGTATCACATTGAA-AACAACGG---GAACTtgtaagttttcgaaactcgATTTCCTCATTTTGTGGTTTAAAAATCTCTCCGAAAGAAATAAGGATAC-----CGA--GGAAAAGCAACAATAATTTAGAAACCACATGTGAAAGTACATTTCAACAAACATTTTAC
i caePb3.Scfld02_0     I 2 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I

a score=-5204.000000
s ce10.chrX             2142996 84 + 17718866 AAAACCTTCAACTGCTGTTAAAACTCAAAATTCATTCTAAAACAACAAAGTCCAAACGCCAGCAAAATACCATTCCCACACGTA
s caeSp111.Scaffold629 33091284 35 + 33334924 GA---------------TTGAACGATCAATT------TGAAAgtagaaaa----------------------------tgggaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893067 69 -  4147112 GA------CAACCCTTCTTCCATCACGGACTGTGGAATAAAAGTACAGAAAC---------ATGAAATATTACACTCTTGAGGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I
e caeRem4.Crem_Contig0  4387315 76 +  4500979 I

a score=-1470.000000
s ce10.chrX             2143080 381 + 17718866 AAAGTGGCATTCAATTAGTT----------------GTAAATATTTCAAGAAAAAAAGTTA---------TTTGTACAA-------CTGAC-------------------------------------AAAAGTTTGGAGTCATATATGTGTCAATTTCAGA--------TAAACTTTTTGTTCAATGGGAAATGGACAGAACGAGaaaatataaaaattaaaaaaaaaaCTAGAATATAGGAGTTGAAAAAATCTGTTAAATATATGTATTTT-----GTAAATGATAAGACAAAAATGCTTGCGGGAACTGCTAAGTGTAA-CTTTTTACT-AGAAAAAAAAGCT---TCAGAGTAATTTTATTAATTACCAATTTTTTTTAAAGCTATGCATTCAGGATATAACGCAAC------AAAGATATAATAATG--CA-ATT--------CGA-AATATTTCAAAAATTATTTTCGACAACGCGAAT
s caeRem4.Crem_Contig0  4387391 308 +  4500979 -----------AAAGTGTGTTCGA------------GTCAAT---------CAAATATTCT-----TCACTTTGTAAAC----TGTTACAT-------------------------------------AGCAAT---AAATCAAGAAAGTGCCAATCAA-----------AGGAATCTATGATCACTGTGAAATGGACAG----------------------TGAATGTTCTAGTATT-TGGAAGTGTGGTAATCTGCCAATAAGAAGTTTTTAACAGAGCAAATGATAAGAGGATC--GCTTGCGGGAA-----ATGAAGAA-GGTTGCACT----------ATCT--GTTAGAATAGGGTTacta-----------ttttaaagaaaatgtctttcagtactaa---aaa--------------aatcattttcg-att--------tga-aaaattcagaaaattt-----gacaaCAAAAAC
i caeRem4.Crem_Contig0 I 76 C 0
s caeSp111.Scaffold629 33091319 341 + 33334924 aaagc--GATTGAATTTTGT----------------GTCAAT---------CGTAaactta---------tttcaaaaa-atatgtttaag-------------------------------------agaaat---gaatcaaatggctgtcaattggaaaactc----aaaaatctttgGTAAATGTGAGATGGACAG----------------------AAAACGGTCTGAAATTCCCAAAGTGTTGTAATCTGCCAAAAAGACa-atttaacagaaaaaa-gataagatGGTA--GCCTGCGGGAA-----AGTTAGAA-GTTTGCACT---------AAACT-----AGAGCATACTTAGTA-----------TTATACTAAGGAGACataaaagaattca---aaaacgattAGCGTTG-AATTGTGGTCA-ATTCAAGTTGGTGaccaaattcaaaacattc--gaCGACAACAAAAAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893136 404 -  4147112 CAAACCGGAATAAATTATTTAAGAAAAGCGTGATCGGTCAAt---------aagaaaagtaagaaataGTTGTCGAAAATGTATGCTCAAGTCAATCAAAGTGAtgatacaaatgaaaaaattaaaaaaaaaat---taatcaaataAGTGTCAAtgagaagattttcaaaaaaatctttggtCATTGTGAGATGGACAG----------------------GAAACGTTCTAGAACTCTCAAACTGTCATAATCTGCCAATGAGACA-CTCCTCTAGAGCAAATGATAAGATGACA--CTTTGCGGGAA-----AATTGTAATGATTGCACTTTGAGAGAAAAACCCCACGAAAAAATGCATAAAG-----------TTATTATAAATAGCCA------------------------AACGTTACACTTGTCTTGACATTCTAAc---tgacaaaatttgaaatattc--gaGGACAACAAAAAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13622699 1585 - 21540570 I

a score=102806.000000
s ce10.chrX             2143461 322 + 17718866 TCGTGGGCGATTTCGGTTTACAAATAGT-AAACGTGTGTGTGTGGGGTGAGAGGTGTTTATTCAGCG--------------------------GAAAGTTCACCGTTCGACAGTTTCGCTGCAAAAAGATTGACTTCCTTCTCATTTTGCTCCC-----------------------CTCACTTGAGTGCTTTTTTACTAGTCTCTACTTTACT----ACTTACCGGCA---AA-GCAATAGACAC-TTTCGAAAGGAATGAGAA-----GGCGAAAAAAGAGCCGC--------------AAAAGACGACGGACCACAAAG-AGCGGAA--AATTGTGAGCAAAAAAAGGAAGGA--AGAGTGAGCTGCGGATAAAGAGTTAGATGATGAGCTTTGCTGAATTT--
s cb4.chrX             13624284 352 - 21540570 TTGTGCGTAGTTTTCGTTTACAAATAGT-AAAA--ACTCGTATGGGGTGAGAGGTGTTTATTCAGCGGGGAAACTTTTTGGGTGGGGGACAGAGAAAGTTCACCGTTCGACGACAGTTTGCA-AAAAGATCAACTTCCTCCTCA--TTGCTCCA-----TTCTTttctattctctttttcacttgagtgttttttttttga-----------ct----acttACCGGGACAGCA-GCAATAGACACTTTTCGAGAAGAATGAAGAAAGGCGGTGCAAAgcgaa-agg-------------aagaaaaaaacgaaccaCGAAG-CGcggcaacaaaaaaaagcagaagaaaAGAGGATCAGAATGATC-CTGGAGATGAAGTTATATGatgagttt------------
i cb4.chrX             I 1585 I 17
s caeRem4.Crem_Contig0  4387699 328 +  4500979 -GGTGGGTGGTTTTGGTTTACAAATAGT-AAAA-----CGTATGGGGTGAGAGGTGTTTATTCAGCGGAG-----------------------GAAAGTTCACCGTTCGACAGTTTCTTTGC-AAAAGATTGACTTCCTCCTCATTTTGctcaa-----ttcttctct-ttttcttcctcgcTTGAGTGCTTTTTCACTAGTATC-------CT----ACTTACCGGCA---AA-GCAATAGACAC-TTTCGAAAAGaatgaa-------agcaaaaaaaagg-agc-------------aaaaagaagacggaccacaaag-agccgca--gaagaaaagaggaagaagggaggaTCAGAATGAG--CTGAAGATGAAGTTAGATGATGAGCTTTTTGTTAGATTT
i caeRem4.Crem_Contig0 C 0 I 100
s caeSp111.Scaffold629 33091660 276 + 33334924 -TGTGTG-GGTTTTGGTTTACAAATAGTAAAAA-----CGTATGAGGTGAGAGGTGTTTATTCAGCGGAG-----------------------GAAAGTTCACCGTTCGACAGTTTCTTTGC-AAGTGATTGACTTCCTTCTCATTTTGCTCCA-----TTCTTCGCT----TTCACCTCGTTTGAGTGCTTTTTCACTAGTCT--------CTACTAACTTACCGACA---AATGCAATAGacac-tttcaaaaagaatgaa-------gtcaaaaaaagagcagcgaagaaaaagaaaaaaagaaagttggACCACAAAG-AGCGGCA--ATACTT---------------------------------------------------------------------
i caeSp111.Scaffold629 C 0 I 9
s caePb3.Scfld02_0      2893540 265 -  4147112 -TGTGTG-GGTTTCGGTTCACAAATAGT-AAAA-----CGTATGGGGTGAGAGGTGTTTATTCAGCGGAG-----------------------GAAAGTTCACCGTTCGACAGTTTCTTTGC-AAACGATTGACTTCCTCCTCAttttgctcaaatttttttgtctcc----tCTACCTCGCTTGAGTGCTTTTCTACT-------------------ACTTACCGGCA---GA-GTAATAGACAC-TTTTAAAAAGAATGAA-------GGCGAAAAAAGAGCCGC-------------AAAAAGAAGACGGACCACAATGCAGCATCA--AAAGTTGAGC---------GAGGA---------------------------------------------------
i caePb3.Scfld02_0     C 0 I 18
e caeJap4.Scaffold4951    48324 1566 +   152553 I

a score=0.000000
s ce10.chrX             2143783 29 + 17718866 AGAAAAAAAGTTTTTCATTTTTTCGCTAA
e caePb3.Scfld02_0      2893805 18 -  4147112 I
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeSp111.Scaffold629 33091936  9 + 33334924 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=-626.000000
s ce10.chrX             2143812 25 + 17718866 CAGCAACTTGAAAAATTTAACATGC
s caeSp111.Scaffold629 33091945 18 + 33334924 -------Tgggggagaaaagaagga
i caeSp111.Scaffold629 I 9 C 0
e caePb3.Scfld02_0      2893805 18 -  4147112 I
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=3650.000000
s ce10.chrX             2143837 40 + 17718866 TCAAAATAAGCACAttaatggtgaagtagaataaataatg----
s caeSp111.Scaffold629 33091963 36 + 33334924 tcAGAATGAGC----TGAAGATGAAGT----TAGATgatgagtt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893823 32 -  4147112 TCAGAATGAGC----TCAAGATGAAGT----TAGatgatg----
i caePb3.Scfld02_0     I 18 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=156.000000
s ce10.chrX             2143877 9 + 17718866 ttttttaaa
s caeSp111.Scaffold629 33091999 9 + 33334924 ttttgttgg
i caeSp111.Scaffold629 C 0 I 44
e caePb3.Scfld02_0      2893855 0 -  4147112 C
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=0.000000
s ce10.chrX             2143886 73 + 17718866 tgacagaaaaaaatgctccgtaatgaccgaatataactggaagaaaCAGTATACAATGTTTCTAAATTAAATT
e caePb3.Scfld02_0      2893855  0 -  4147112 C
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeSp111.Scaffold629 33092008 44 + 33334924 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=-364.000000
s ce10.chrX             2143959 39 + 17718866 CAAAATTTCCTAATAGTCGATAATTCTACACAAATTTAT
s caeSp111.Scaffold629 33092052 18 + 33334924 caaaaacttttcatattc---------------------
i caeSp111.Scaffold629 I 44 C 0
e caePb3.Scfld02_0      2893855  0 -  4147112 C
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=0.000000
s ce10.chrX             2143998 1 + 17718866 A
e caePb3.Scfld02_0      2893855 0 -  4147112 C
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624636 17 - 21540570 I
e caeSp111.Scaffold629 33092070 0 + 33334924 C
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=-28624.000000
s ce10.chrX             2143999 262 + 17718866 ATTTTTTTAACTAAGAAATGTCTGGAAAATTGAAAATTGGTGTATTAATTTTAAAGATAAAATTATgaaaacaaagtcgaaaatgacgtcactcatttgtgcggaaatttaattttttt-tagctcattccttttatttttgcaaaattgaaaaaataaataaaaatttagaaaacatttatcaactttttaaagtcattacagcccattttctaacatttaaagcaaaaTCCTCACTCGAAAATATGTGTTTTTTTTGCGAT
s cb4.chrX             13624653 135 - 21540570 atttttttgcc--------gtc---------------------gccagatttcatgc-----------------------------------------------------gatttctttttttccgttttttgtcctttcTGGTAAga----gaaaaac-caagaaaaacccagaaa----------------aaccacaaca--------------aaagaaagtaaaaTAT----ATATGCATGTatcattttt-------
i cb4.chrX             I 17 C 0
s caeSp111.Scaffold629 33092070 132 + 33334924 -------------------------------------------------tgtcaagcaaaa------aaaccaaaaacaaa----gCACaactc--------------tcaatttttct-----ctttttgtgacGTTCATGTCAATC----AACTT---TTAGTTGGTCACATGGT----------------------------------------AAATCGGAtgcaacttttttatatacatatatcttttttt------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893855 115 -  4147112 --------------------------------------------------------------------------------------------------------------agttttttgttagaTTTTTCATGGCTTTCATGCGAAAT----AATGTGCATCagattttcacaaattttta-caAC------GAAGAGctcca--------------aaacaaaacacaactC-------AGAATATTTCTTTTATT------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e caeRem4.Crem_Contig0  4388027 100 +  4500979 I

a score=3973.000000
s ce10.chrX             2144261 43 + 17718866 AGCATAACTTTTAAATCTTGACATTCA-----TGTCAATCAAAGTTTT
s cb4.chrX             13624788 35 - 21540570 ----ttatattttga-caTGTC---TA-----Tgtcaatcaaattttt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4388127 43 +  4500979 AATATAATATTTTCATTGTGTCATTCA-----TGTCAATCAAGTTTTT
i caeRem4.Crem_Contig0 I 100 I 154
s caeSp111.Scaffold629 33092202 31 + 33334924 -----------------gtttttctcaacgCTGGTCAGACAATTTTTC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893970 26 -  4147112 -----------------GTGACGTTCA-----Tgtcaatcaacttttt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I

a score=-19104.000000
s ce10.chrX             2144304 122 + 17718866 ------------------ATTTCTCTTTTTCTGGAGTCAGATG----ACAGATATAAACATCATTTTCGGGAAATTTCAGTTATTCTACTGTTTTGGAGGGGAAAAGGCTCACATCTCGTAATGACGTAAATGTGTATGAAAAT
s cb4.chrX             13624823  70 - 21540570 ------------------ttgcctaTG---CTTTGGTCACATGCACCATATATGTAActa---------agatttttcaagtttcccgTTAC--------AAGA----------------ATTT--------------------
i cb4.chrX             C 0 I 16
s caeSp111.Scaffold629 33092233  57 + 33334924 AT--------ACGCATCAAAGCCTATG--------------------ACGTTGGT----------------GAACTCCaaattc-----taa--------gaaaaa--------------actgaaac----------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2893996 114 -  4147112 tttgtttgtcacATGGTATATCCgatgtaacttttttctcat-----acatatat----------------atttttcatgtttttccgTAT--------AAAATATGTTCACATGCATCAATGACATCTACGt-tatcaaatt
i caePb3.Scfld02_0     C 0 I 23
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e caeRem4.Crem_Contig0  4388170 154 +  4500979 I

a score=0.000000
s ce10.chrX             2144426 23 + 17718866 AATGTTATGCGCATGACCAGAGT
e caePb3.Scfld02_0      2894110 23 -  4147112 I
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624893 16 - 21540570 I
e caeSp111.Scaffold629 33092290  0 + 33334924 C
e caeRem4.Crem_Contig0  4388170 154 +  4500979 I

a score=-4730.000000
s ce10.chrX             2144449 28 + 17718866 --------ATTATAACATT-------------ATATACACCTGATATCA------
s cb4.chrX             13624909 26 - 21540570 CTTTTAAGACTCTAACATC-------------TGCAAAA----------------
i cb4.chrX             I 16 C 0
s caeSp111.Scaffold629 33092290 21 + 33334924 ------------taacatt-------------gaaaaaacc-----ttttt----
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894133 47 -  4147112 --------ATTCTAACATCAGAaccaaacccaaaaaaaaccgaagattTCTGAGA
i caePb3.Scfld02_0     I 23 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e caeRem4.Crem_Contig0  4388170 154 +  4500979 I

a score=18052.000000
s ce10.chrX             2144477 25 + 17718866 AACATCTAATTAGAAAAACAGGTGA
s cb4.chrX             13624935 25 - 21540570 AACCGCTAATTAGAAAAACAGGTGA
i cb4.chrX             C 0 I 672
s caeRem4.Crem_Contig0  4388324 25 +  4500979 AACCGTTAATCAGGAAAACAGGTGA
i caeRem4.Crem_Contig0 I 154 C 0
s caeSp111.Scaffold629 33092311 23 + 33334924 --tcactAATTAGAAAAACAGGTGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894180 25 -  4147112 AACTGCTAATTAGAAAAACAGGTGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I

a score=-6519.000000
s ce10.chrX             2144502 58 + 17718866 ATTGAGTTTTCATATACCCCGTTGGGCGTTTTCTTTTTCTTTTGGGA-----AATTCATACAT-------------------
s caeRem4.Crem_Contig0  4388349 34 +  4500979 -------------------------------------------AACG-----AAATCATATGTTTTGTAGAATTCTTAGTAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33092334 20 + 33334924 -------------------------------------------AGTATAATGGAATTATATGT-------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894205 14 -  4147112 -------------------------------------------AGCA-----GAAACACATG--------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I
e cb4.chrX             13624960 672 - 21540570 I

a score=-4897.000000
s ce10.chrX             2144560 28 + 17718866 GGGTCTGTTTTTGTTTTTATAGAAATGT
s cb4.chrX              1711452 20 + 21540570 GGGGCAGTTTCTGTTTTGAC--------
i cb4.chrX             n 672 C 0
s caeRem4.Crem_Contig0  4388383  4 +  4500979 ------------GCCT------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33092354 13 + 33334924 -------TTTTTGCACttcg--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894219 13 -  4147112 -------TTTTTGATCAACC--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    48324 1566 +   152553 I

a score=29277.000000
s ce10.chrX             2144588 111 + 17718866 ATAAAATTTTCAAAAAGGTTTTTATTAGCAATATT--TAAAACCAAAATA---------------AAAATCGACA---------------ATTTAACGTCTAGCGTATCCTGGTCCAGTTCTCGGTGGTGGACAATGATCACA
s cb4.chrX              1711472 119 + 21540570 -CAAATCTTTCAATGATatatttgtt-ttgaatttttaaaaaagaaaatg----tatgTCTGTATTGAACAAGTT---------------TCTCATGGTT---AATATCCTGGAGCAGTTCTTGGTGGTGGGCAGTGGTCGCA
i cb4.chrX             C 0 I 247
s caeRem4.Crem_Contig0  4388387 120 +  4500979 -CGAATCTTT----------TTTGTCAGTAGGTTTATTGAATAAAGAATGGGGACATTGCTGAGTAAAATGAGATTAA------------TTTCAACGTCTGGCATATCCTGGTCCGGTTCTAGGCGGTGGGCAATGATCGCA
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33092367 110 + 33334924 -tcaattttt--attAGAATTTCGACacaagaatc---aaaaaaaagagg---------------gaagcatagaaaa------------atttaacgTCTGGCATATCCTGGTCCGGTTCTTGGTGGTGGACAATGATCACA
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2894232 106 -  4147112 -TCAAGCTTT--ATTAGAAATTTGTAATAAGAAT-------AAGACAAGG---------------GATACAACTTCAA------------ATTTAACGTCTAGCATATCCTGGTCCAGTTCTTGGTGGTGGGCAATGATCGCA
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951    49890 122 +   152553 ataaaacatt--aaaatatTCTGATCAGAGAGTG----AAAACCAAAACT---------------TTATTAAATTCAAAGGTATAAAACCAATTAGCGTCTGGCATAACCTGGTCCAGTGCGTGGTGGTGGGCAGTGATCGCA
i caeJap4.Scaffold4951 I 1566 C 0

a score=-31.000000
s ce10.chrX             2144699 1 + 17718866 G
s caeJap4.Scaffold4951    50012 1 +   152553 A
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2894338 1 -  4147112 I
e cb4.chrX              1711591 247 + 21540570 I
e caeSp111.Scaffold629 33092477 1 + 33334924 I
e caeRem4.Crem_Contig0  4388507 1 +  4500979 I

a score=158485.000000
s ce10.chrX             2144700 164 + 17718866 GATCCAGGTTGTCCTGGTGGTCCACGTGGTCCAGTTCCTCCGTGTGGTCCTGGAAGTCCGTCAGATCCCTTCTCTCCAGGATCTCCTGGCAATCCTGGTGGTCCGGCCTTTCCAGGTTGTCCATCCTTtcctggtggtcctggtggtccttgtggtcccggtgg
s cb4.chrX              1711838 146 + 21540570 GATCCTGGGTTTCCGGCTGGTCCACGTGGTCCTGGTCCTCCGCGGGCTCCTGGGCGTCCAGCGAGTCCGTCGCGTCCTGGTTCT------------------CCGGCGCTTCCGTTGTCTCCATCTGGTCCTGGacgtcctggtggtccagctggGGCTTCTGG
i cb4.chrX             I 247 n 247
s caeRem4.Crem_Contig0  4388508 164 +  4500979 gatcctggttgtcctggtggtccacGTGGTCCAGTTCCTCCGTGTGGTCCTGGAAGTCCGTCGGATCCCTTCTCTCCTGGATCTCCTGGAAGTCCTGGTGGCCCGGcctttcctggttgtccatcctttcctggtggtcctggtggcccttgtggtcctggtgg
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33092478 164 + 33334924 gatcctggttgtcctggtggtccacGTGGTCCAGTTCCTCCGTGTGGACCTGGAAGACCGTCGGATCCTTTCTCTCCTGGGTCTCCTGGCAATCCTGGTGGTCCGGCCTTTCCGGGTTGTCCGTCCtttcctggtggtcctggaggtccttgtggccctggtgg
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2894339 164 -  4147112 GATCCTGGctgtcctggtggtccacgTGGTCCGGTTCCTCCATGTGGTCCTGGAAGTCCATCTGATCCCTTCTCTCCTGGATCTCCTGGaagtcctggtggtccgggtTTTCCTGGTTGACCAtcctttcctggtggtccaggtggtccttgtggtcctggagg
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951    50013 164 +   152553 GATCCTGGTTGTCCTGGCGGTCCACGTGGTCCAGTTCCACCATGTGGTCCTGGAAGTCCATCGGATCCCTTCTCTCCTGGGTCTCCTGGAAGTCCGGGTGGTCCAGcctttcctggttgtccatcttttcctggtggtcctggtggtccctgtggtccaggtgg
i caeJap4.Scaffold4951 C 0 C 0

a score=337496.000000
s ce10.chrX             2144864 370 + 17718866 tcctggtggtcctggaggtcctggtggAGCTCCATTGATAACCTTTCCTGGCTCTCCAGTTGGTCCTTTTTCTCCTGGAACTCCCGGTGCTCCTTGTGGTCCTGATGGTCCTGGTGGTCCTGGAAGTCCTGGAACGCCATCTTGTCCTGATGTACCGGCATCTCCTTGTGGTCCTGGAAGGCCTTTtggtcctggtggcccggctggtcctggtggtcctggtggACACTTCTGGCATGGTGGCTTCGGTGGGGGTCCCGGAAGAAGTGCTCCGTCTCTTCCTGGTGGTCCTGGGTTTCCTGGTCT---------TCCTGGTGCTCCCGGACGTCCGTCTCTTCCAggtggtcctggtggtcctggtggtccAACTTGA
s cb4.chrX              1851645 323 + 21540570 TCCTGGATGTCCTTG----------------ACGTCCATA--TTCTCCTGAATTTCCCTTCGATCCATCCTTTCCTGGCTCTCCTTGTGGTCCACGTGGCCCTTGTGGTCCTGGACGTCCTGGATTTCCTGGAGTGTAGACGGTTCCTGGTTGTCCAGTCTCTCCACGCTGTCCTGGTCTTCCTTGTGGTCCCTGTGGTCCGGTCTCTCCTGGCtctcc------------------------------ttgtggtcctggg------GTTCCAGCTTCTCCTGGCGTTCCACGTTGTCCTGGACGTCCTCCgtttcctggtggtcctggtggtccggcgTCTCCACGTGGTCCACGTGGTCCGGCTGGGC--ACTTGA
i cb4.chrX             n 247 n 247
s caeRem4.Crem_Contig0  4388672 370 +  4500979 tcctggtggtcctggtgggcctggtggAGCTCCGTTGATAACCTTTCCTGGCTCTCCAGTTGGTCCCTTCTCTCCTGGAACTCCTGGCGCTCCTTGTGGTCCAgatggtcctggtggtcctggaagTCCTGGAACACCATCTTGTCCAGGTGTACCAGCAtctccttgtggtcctggaAGACCTTTtggtcctggaggtccggctggtcctggtggtcctggtggacACTTTTGACATGGTGGCTTTGGTGGTGGCCCTGGGAGAAGAGCTCCGTCTcttcctggtggtcctggatTTCCTGGacg---------tcctggtgctcctggccGACCGTCTcttcctggtggtcctggtggtcctggtggacCGACTTGG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33092642 370 + 33334924 ccctggtggtccgggaggtcctggtggAGCTCCGTTGATAACCTTTCCTGGTTCTCCAGTTGGTCCCTTTTCTCCTGGAACTCCTGGAGCTCCTTGTGGTCCAgatggtcctggtggtcccgGAAGTCCTGGAACTCCGTCCTGTCCTGCGGTACCAGCATCtccttgtggtcctggaagtccttttggtcctggtggtccggctggtcctggtggtcctggtggacacttttggcatggaggctttggtggtggtcCTGGGAGAAGAGCTCCGTCTcttcctggtggtcctggatTTCCTGGAcg---------tcctggggctcctggacGACCGTCTCTTCCTGgaggtcctggtggtcctggtggaCCAACTTGG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894503 370 -  4147112 tcctggtggtccaggtgggcctggtggtgCTCCATTGATAACTTTTCCTGGTTCTCCGGTTGGTCCCTTCTCTCCTGGTACTCCTGGAGCTCCTTGTGGCCCAGATGGTCCTGGTGGCCCTGGAAGTCCTGGCACTCCGTCTTGTCCTGGAGTTCCTGCatctccttgtggtcctggaaGTCCCTTTGgacctggtggtccagctggtcctggcgGTCCTGGTGGACACTTTTGACATGGAGGCTTTGGTGGTGGTCCTGGAAGAAGAGCGCCATCtcttcctggtggtcctggatTTCCTGGACG---------ACCTGGGGCTCCTGGGCGTCCGTCtcttcctggtggtcctggtggtcctggtggacCAACTTGA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    50177 370 +   152553 tcctggtggtcccggtgggcctggtggAGCTCCATTAATAACCTTTCCAGGCTCTCCAGTTGGTCCTTTCTCTCCTGGAACTCCTGGAGCACCTTGTGGACCGgatggtcctggtggtcctggaaGTCCTGGCACTCCATCTTGTCCTGAGGTTCCGGCGTCtccttgtggtcctggaagtccttttggccctggtggtccagctggtcctggtggtcctggtgggcatttttggcatggtggtttgggtggtggccctggAAGAAGAGCTCCGTCTcttcctggtggtcctgggtTTCCTGGGCG---------TCCTGGAGCTCCTGGGCGTCCGTCTCTTCCTGgaggtcctggtggtcctggtggaCCAACTTGG
i caeJap4.Scaffold4951 C 0 C 0

a score=371231.000000
s ce10.chrX             2145234 609 + 17718866  
s cb4.chrX             13625632 581 - 21540570  
i cb4.chrX             I 672 C 0
s caeRem4.Crem_Contig0  4389042 555 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33093012 553 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2894873 573 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    50547 572 +   152553  
i caeJap4.Scaffold4951 C 0 I 2881

a score=-61.000000
s ce10.chrX             2145843 12 + 17718866 GTGGATGAATTG----
s cb4.chrX             13626213  7 - 21540570 GTGAGTA---------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4389597 12 +  4500979 ACGGGTAAATGG----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33093565 16 + 33334924 ACGGGTAAATGCATTG
i caeSp111.Scaffold629 C 0 I 36
s caePb3.Scfld02_0      2895446 16 -  4147112 ACGGGTAAAGACATTG
i caePb3.Scfld02_0     C 0 I 6
e caeJap4.Scaffold4951    51119 2881 +   152553 I

a score=-2437.000000
s ce10.chrX             2145855 18 + 17718866 -CCGCGCGCCTACTGATGG-------
s cb4.chrX             13626220 17 - 21540570 --TGTACTCATCCCGCTGT-------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4389609 19 +  4500979 ATTGTACTCCTCCCGTGGT-------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2895468 22 -  4147112 ----TCTCTCTCCCAAGAGAATGATG
i caePb3.Scfld02_0     I 6 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e caeSp111.Scaffold629 33093581 36 + 33334924 I

a score=6108.000000
s ce10.chrX             2145873 43 + 17718866 ----GC-TGAGATAAAATGAAATTCCGGAGG-----TCTTTGAGAATCTGGGA------------
s cb4.chrX             13626237 50 - 21540570 GATCACAAAAGATAATT-GGAATTCCGGAGGAGGTCTTTGTGTGTATGTGA--------------
i cb4.chrX             C 0 I 939
s caeRem4.Crem_Contig0  4389628 47 +  4500979 GATCAC-GGAGATAATGAGAAATTCCGAAGG-----TCTGTGTGAATTGGAGT------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33093617 52 + 33334924 ----AC-AAAGATAATGTGGAATCCCGGAGG-----TCTGTGCGAATCCAA--A-CTATCCGGCG
i caeSp111.Scaffold629 I 36 C 0
s caePb3.Scfld02_0      2895490 52 -  4147112 ----AC-GGAGATAAAATCGAATTCCGGAGG-----TCTATGTGATCCAGA--ATCTGTACAgc-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I

a score=640.000000
s ce10.chrX             2145916 4 + 17718866 GGTA
s caeRem4.Crem_Contig0  4389675 4 +  4500979 AGTA
i caeRem4.Crem_Contig0 C 0 I 1293
s caeSp111.Scaffold629 33093669 4 + 33334924 GGTG
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2895542 0 -  4147112 C
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13626287 939 - 21540570 I

a score=159.000000
s ce10.chrX             2145920  9 + 17718866 AATGGGGTA-
s caeSp111.Scaffold629 33093673  9 + 33334924 AATGTGATA-
i caeSp111.Scaffold629 C 0 I 655
s caePb3.Scfld02_0      2895542 10 -  4147112 aatttgagaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13626287 939 - 21540570 I
e caeRem4.Crem_Contig0  4389679 1293 +  4500979 I

a score=151.000000
s ce10.chrX             2145929 57 + 17718866 AAGTA---------------------CATATCGTATAGTTGAAGTTGTATGTGATATATCTGATTAAATTACTTACAA
s caePb3.Scfld02_0      2895552 78 -  4147112 atgaagaataattttgtctgaaaacctAAGCCGTCTGCTAAAATTTGTatgaattatttcaaattcatttattgataA
i caePb3.Scfld02_0     C 0 I 3068
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13626287 939 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I
e caeRem4.Crem_Contig0  4389679 1293 +  4500979 I

a score=0.000000
s ce10.chrX             2145986 574 + 17718866  
e caePb3.Scfld02_0      2895630 3068 -  4147112 I
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13626287 939 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I
e caeRem4.Crem_Contig0  4389679 1293 +  4500979 I

a score=433.000000
s ce10.chrX             2146560 47 + 17718866 TAGAGACCCCTTTTAGTTGTTTTCTATAAAAGCTGATGCTTGAATAA
s caeRem4.Crem_Contig0  4390972 40 +  4500979 TAAAAACCCCTCATA-TTGTTCTGTTTA---GCTTCtgttagaa---
i caeRem4.Crem_Contig0 I 1293 C 0
e caePb3.Scfld02_0      2895630 3068 -  4147112 I
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13626287 939 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I

a score=9216.000000
s ce10.chrX             2146607 90 + 17718866 TTGAAACAATAAAGAAAATAGCCAACTTGTTCT--ATTGCTATAAGTTTCTTTATTAGTTGTTGGTCAGAT-----TTGAAATGAAAACAAAGAAGA
s cb4.chrX             13627226 96 - 21540570 TTGCAGCAGGAAAA-GCAAGAGTAACTCGTTTCAAAATGTGATAGGATCATTTATTAGTTGTTGGTCAAATTCGAATCAGCATGGAAACAAAGAAGA
i cb4.chrX             I 939 I 2628
s caeRem4.Crem_Contig0  4391012 87 +  4500979 ----aacaaaacaatgcATGACTAACTCGTTCCAAATTGTGAACAGATCA-CTATTAGTTGTTGGTCAAAT-----TCAGAATGAGAACAAAGGAAA
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2895630 3068 -  4147112 I
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I

a score=145.000000
s ce10.chrX             2146697 6 + 17718866 CGTTAA
s caeRem4.Crem_Contig0  4391099 6 +  4500979 AGTGAA
i caeRem4.Crem_Contig0 C 0 I 281
e caePb3.Scfld02_0      2895630 3068 -  4147112 I
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13627322 2628 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I

a score=0.000000
s ce10.chrX             2146703 513 + 17718866  
e caePb3.Scfld02_0      2895630 3068 -  4147112 I
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13627322 2628 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I
e caeRem4.Crem_Contig0  4391105 281 +  4500979 I

a score=49.000000
s ce10.chrX             2147216 59 + 17718866 tttaaaattttcaattttcatattcataata-atttttttGGATTTTACAAATTA------------GGTAG
s caePb3.Scfld02_0      2898698 68 -  4147112 ttcaaaattcataat----GCAATTATAAGACATTTCTTCGTAGTTCAGAAGTCACAGAACTGTTCAAATCT
i caePb3.Scfld02_0     I 3068 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13627322 2628 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I
e caeRem4.Crem_Contig0  4391105 281 +  4500979 I

a score=584.000000
s ce10.chrX             2147275 3 + 17718866 ATA
s caeRem4.Crem_Contig0  4391386 3 +  4500979 aCA
i caeRem4.Crem_Contig0 I 281 C 0
s caePb3.Scfld02_0      2898766 3 -  4147112 ACA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13627322 2628 - 21540570 I
e caeSp111.Scaffold629 33093682 655 + 33334924 I

a score=1581.000000
s ce10.chrX             2147278 69 + 17718866 CAAATGttttattaaa---aaagtttaaaaattatattttaatG---TGAGGGTT--CCGAGAGATGGAAAAAGACC
s caeRem4.Crem_Contig0  4391389 71 +  4500979 CGAACGATTTATTAAACATAACTCTTCAAA------TTATGAACTGGTTAAgtttaaatgaaaaagtgagaaaaaca
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33094337 60 + 33334924 CGAACACTTTATTAag---actgtttcaaaa----atcatgaac---TTATGATT-------CAAATGAGGAACACA
i caeSp111.Scaffold629 I 655 C 0
s caePb3.Scfld02_0      2898769 60 -  4147112 CGAACGCTTTATTAAA---ACGTTTTCAAAC----GATGAAacc---aaaagttc-------caaaaaagacAGTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    51119 2881 +   152553 I
e cb4.chrX             13627322 2628 - 21540570 I

a score=4276.000000
s ce10.chrX             2147347 39 + 17718866 AAGAGATACATTAACTA------CGACAGAAAACAG----GTGGAGATA-----
s caeRem4.Crem_Contig0  4391460 38 +  4500979 gAGAGATGCTTAGACTA------CAGACGGAAATAA----ATGAGGA-A-----
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold629 33094397 39 + 33334924 AAGCGATACATTAACTAGTACAGcaaaagaa---------gtggaag-a-----
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2898829 42 -  4147112 GAGAGATACATTAGCTA------CATAAGAAGATTACGGTGTGAGGG-A-----
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951    54000 43 +   152553 AAGTTATATATTAACTA------CACAGGAAAAATA----TCAAAGG-GATTCA
i caeJap4.Scaffold4951 I 2881 C 0
e cb4.chrX             13627322 2628 - 21540570 I

a score=29296.000000
s ce10.chrX             2147386 190 + 17718866 --GTCGCCGGTTTGGAGTGTGTGAAAAAAA-GATACCAGCTA--AATTAC---ATGATGACCACGAGATCT-ATAACGATTAGGTGTAATCGAGCTGAAAAAATCTAAGAAAAGTAAGTATTGAAAGAC------------------TTGAAAATTGAGAATTTAAAAAACCGAAA----------AATAAGATTA--------ACAATTTAGTTGACAAAATTTGAGCCGTAGG
s cb4.chrX             13629950 180 - 21540570 --GTCGCCG---------GTGGGAAAAAAGTTATACCAGCT---AATTACAGGATGAAGACCACGAGATCTAAAAACGATTA-GTGTGAGTGA------ACTGTCTA-------------CTGAAAGACTTTGTTAATTTGGAGAGGATGGAGATTAGGAA--TAGAGGTTAGAACAGGAGGGGTTTCTGATGTAA--------ACG-----------AAAATTGGAGCCGTaat
i cb4.chrX             I 2628 I 43
s caeRem4.Crem_Contig0  4391501 160 +  4500979 --GTCGCCGGTTT-----GTGTGGGAAAAATTATACCAGCT---AATTACAGGATGATGACCACGAGATCT-AAAACAATTAGGTGTAATAGagatt--aattttta-------------ataaaaggC-----------GGAAAGTTTGGGCATTGAGGA--TTAAGAATAGAAT-----------------TTA--------ACT-----------AGTAATTGAGCCGCATC
i caeRem4.Crem_Contig0 I 3 I 1
s caeSp111.Scaffold629 33094436 162 + 33334924 --atcGCCGGATTGT-ATGGGGGGAGGAAACGGTACCAGCT---AATTACAGGATGAAGACCACGAGATCT-AAAACGATTAGGTGTAATCGGGATG--TAGTTCTA--------------TGAAAGAC------------------TTGAATGTTGGGG---TAGAGATTAGAAA----------TATAAAGAAA--------CAA-----------ATTAACTGAGCTGTTGG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2898872 171 -  4147112 --GTCGCCGGTTTCT-GGGTATGGAAACAATGTTACCAGCT---AATTACAGGATGATGACCACGAGATCT-AAGACGATTAGATGTAATCGGGATG--AAATTCTA-------------TTGAAAGAC------------------TTGAAAATTGGGG---TAGAGATTATAAT----------TAATAAGTAAGTgtggagaaa-----------aaacattgagcCGTAAA
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951    54043 137 +   152553 GGTTCGCCG-------GCGCTTCAAAGAA----TACCAGCTAGTAGTTACAAGATGTTTACCACGAGATCT-AAAACGTTCAAAAACGGCTAGG-----AAAGACTG-------------TGAAAAGGA------------------ACAAATAATGAGAGGGCAGTGGGAAAAAT----------GGTCAATTT----------------------------------------
i caeJap4.Scaffold4951 C 0 C 0

a score=-8123.000000
s ce10.chrX             2147576 28 + 17718866 GTCAC-ATTATCAAAAACAAGAACGCGAC
s caeRem4.Crem_Contig0  4391662 25 +  4500979 GTTGG-CAATTGACTTTGGAAGTGTT---
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33094598 29 + 33334924 GTTAtcaaaatgaggaaaaagtTAATAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2899043 28 -  4147112 GTCAT-AATTTGACAGGAAATGAATTAGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    54180 19 +   152553 --CAA-ATGATTGCGTCCAAGT-------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13630130 43 - 21540570 I

a score=52446.000000
s ce10.chrX             2147604 68 + 17718866 TGATTA---TTCGTCCGCCAAGCTTTTCTTCCGTCGCTTTATATCCAGTTTTGTCCGGAGAATGC--TGAAAA
s cb4.chrX             13630173 68 - 21540570 TAATTA---GTCTTCGGATAGACACTTCTTCCTTCGTTTGATATCCAGTTTTGTTCGGAGAATGC--TGAAAG
i cb4.chrX             I 43 C 0
s caeRem4.Crem_Contig0  4391687 68 +  4500979 TAATTA---ATCGTCGGCAAGACTTTTCTTCCGTCGCTTAATATCCAGTTTTGTCCGTAGAATGC--TGAAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33094627 67 + 33334924 ---CTA---TTCATCCGATAGGCTTTTCTTCCGCCGTTTTATGTCGAGTTTTGTTCGGAGAATGCtgtaaaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2899071 68 -  4147112 ---TTAATTATCATCAGCTAagctcttcttcctccttttgATGTCGAGTTTTGTCCGGAGAATAC--TAAAAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    54199 68 +   152553 TGATCA---CTCATCAACAATGCACTTCTTTCTTCGTTTTATATCTAGTTTCGTTCGTagaatgc--tgaaaa
i caeJap4.Scaffold4951 C 0 I 38

a score=-10375.000000
s ce10.chrX             2147672 37 + 17718866 TTCC------AATACTCAAAATA-------AGCACAACTCTTATTTACTC
s cb4.chrX             13630241 40 - 21540570 ----------AAGACGCGGATTAAAAGATTAActcagttttgaaattctt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4391755 37 +  4500979 ----------CACTTTGATGTTTCAAG---AATTCAATTAGGAGTAACAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33094694 35 + 33334924 ----------gaaatataaatGAAATTCGTAATCCAAT-----ATCACAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2899139 38 -  4147112 TTcgtcatttgaaa---aactgaaaagattaCTTC---------TGACTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    54267 38 +   152553 I

a score=316943.000000
s ce10.chrX             2147709 524 + 17718866  
s cb4.chrX             13630281 545 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4391792 515 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33094729 540 + 33334924  
i caeSp111.Scaffold629 C 0 I 3
s caePb3.Scfld02_0      2899177 533 -  4147112  
i caePb3.Scfld02_0     C 0 I 111
s caeJap4.Scaffold4951    54305 608 +   152553  
i caeJap4.Scaffold4951 I 38 C 0

a score=-31992.000000
s ce10.chrX             2148233 121 + 17718866 aatatgagcttttataaattcagggaaatgttgttccgatccctaaaatgttttaacacgagtaattaaaatcagattaaagtatacaaattgtagaaatttattttatc--aactattcc-----aa
s cb4.chrX             13630826  62 - 21540570 TATATGG-----------------------------CATTCG------TCTCAT----------------------------CAGAAGAATCTG---TTTCTGTTTCTCCCAAACAAATCCCAATAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4392307  39 +  4500979 TACATA----------------------------------------------------------------------------TAAACTAAtcac---ttttcaattc-----aattcttcC-----AA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33095272  83 + 33334924 TATCTAGACAGACAGA---TAAAAGAGATA----TCCAGTCGGTGAAATGTGATAG----------------------AGAACACATATATCAC---TATTGGATATCTTTCGAT-------------
i caeSp111.Scaffold629 I 3 C 0
s caeJap4.Scaffold4951    54913  22 +   152553 ------------------------------------------------------------------------------------CGACAGTTTC---TACTAATTTT-----AA--------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2899710 111 -  4147112 I

a score=-27418.000000
s ce10.chrX             2148354 83 + 17718866 ttttgtattccaaaatgatatgtgggaaaaactgagtaattgtcactttttgacagaaaataaaaaatttcaatttttttttt-----------
s cb4.chrX             13630888 33 - 21540570 ---------------------------------------------ATCTT-----CTAAATCAGACACTAGACAGTGATAGTT-----------
i cb4.chrX             C 0 I 17
s caeRem4.Crem_Contig0  4392346 20 +  4500979 ---------------------------------------------ATCTC-----CCAAATCAGACAATC------------------------
i caeRem4.Crem_Contig0 C 0 I 8
s caeSp111.Scaffold629 33095355 55 + 33334924 -------TTCTATGTGCACGTAAAAAGCAA------------TAGAT---------AAAATGGAACACTTGAAATCTGTTGCG-----------
i caeSp111.Scaffold629 C 0 I 316
s caePb3.Scfld02_0      2899821 73 -  4147112 TTTTGATTTCTAAGTGcacataaaaaacaaaacggagAA--GTGGAT--------AAAAATGGAACACTTGAATAATGTTGCG-----------
i caePb3.Scfld02_0     I 111 I 123
s caeJap4.Scaffold4951    54935 26 +   152553 ----------------------------------------------------------------TCACTT----TTCGTTTCGTTCATCCTCTA
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2148437 30 + 17718866 gaaaagttttcctatgatattcggctgttt
e caePb3.Scfld02_0      2899894 123 -  4147112 I
e caeJap4.Scaffold4951    54961  0 +   152553 C
e cb4.chrX             13630921 17 - 21540570 I
e caeSp111.Scaffold629 33095410 316 + 33334924 I
e caeRem4.Crem_Contig0  4392366  8 +  4500979 I

a score=-10048.000000
s ce10.chrX             2148467 100 + 17718866 tgggactatgagtagatacttttcctactggcgctactcaaccttaaAAAAAGGAATC-AATCCAGT-CATCTAAA--------TGACAGACAATTTATC------AATGTTGAAT
s cb4.chrX             13630938  61 - 21540570 ----ATCAGAGGTATATGT---------------------------Catagagaga------------cagagaga----------gtGGAAGAGATATCAATCTGAATGCTGA--
i cb4.chrX             I 17 C 0
s caeRem4.Crem_Contig0  4392374  78 +  4500979 -----CTAGACAGACAGAT---------------------------AAAAGAGAAA-----TCCAGT-CAGCGATATGTCATAGTGATAGACGATATATTTATATCAGTGTTGGAT
i caeRem4.Crem_Contig0 I 8 C 0
s caeJap4.Scaffold4951    54961  75 +   152553 ------------------------TTTCCTCCTTTACCGAAC----AGATAAGAAGTCGAATCCAGTCTAGCGCGA-------------GATGATATAGATATATCAGGGATGCAT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2899894 123 -  4147112 I
e caeSp111.Scaffold629 33095410 316 + 33334924 I

a score=-26768.000000
s ce10.chrX             2148567 166 + 17718866 CTCTACCCGACATT--TTGTTTCATGTGCATAGAAAA-------ACTAGAGGGTATTAAA---------------------TGGAACACTCGA---ATTTGAT---AGTGGATAACCC-GTTTTATTTTTTTTTTCG-ACGATTGAAGGAA----ATCGCTACCATGGTAGAAAAAAA--AGATTAGTGTGAAGATTTACTAC--TTTGTTA
s cb4.chrX             13630999 151 - 21540570 ------TAGTCGTTTCGATTTCTATGTGCATAGAAAA-----------AATgccaataaa---------------------------atttga---atggtAG---AGGGAACCCGTC-CTCGTGtttttttGCTA--GTGATTGATGTCA----TTTGATaggattttaagaaaaag--agaaaaaaacgaagattTACTGC--TTCACTT
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0  4392452 174 +  4500979 --CTCCTTGTC-TTTCCTTTTTTACGTGCATGGaaaaaaaCGGTAGTGAAGGGCAATAAA---------------------TGGAACACTTGA---ATTCTGT---TGTGAACAACTC-gtctatctttttttctattttgattgATGTCACCGCTTCTGTAG----TTAGGCCAAAGTCTGATGAGTGTGAAGATTTACTGC--TTT-CTA
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0      2900017 133 -  4147112 ----------------CTTTTTTGGGAAGGTCGTTAA-----------AAGTGTAAAAAG---------------------------TTTCTAGACAGGATAA---TGTGAAATATTCAATCAAACAATGTTAC----ACAATT-ATctca-----------gacttttttttcaaag--gattaTCTGCGGAAATATATTATAGTTA----
i caePb3.Scfld02_0     I 123 I 20
s caeJap4.Scaffold4951    55036 147 +   152553 ----CTCTTTCCTCTCCATCTATATGCACATAAAAAA------CCACAGAGGGCATTAAATCGAAATAGAATGCAGGAGGATAGAACAATCGA---ATTCTGTTCGTGAGTATAACCC-GTTCGCCTAGTTTCTC---TTGATTAATGTAT-----------GTATCTTTTATTA-------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33095410 316 + 33334924 I

a score=-11651.000000
s ce10.chrX             2148733 32 + 17718866 AGTGGTTGGCG-------------------GGTC---------GGCAAACGGTT----------------------------CATAAA
s cb4.chrX             13631151 45 - 21540570 TACTGTCGGCG------------GCTTTGTGATCTAGTCTA--AATATGCTGTA-----------------------------ACAAC
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4392627 88 +  4500979 AACAGTCGGCACTTaacaacagttttttttggtttagaaaaagaatataCTGTAATAGACAGGTCTAGACAGTGATCTGTATCACAAT
i caeRem4.Crem_Contig0 I 1 C 0
s caeJap4.Scaffold4951    55183 10 +   152553 TGAGACTCGC------------------------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2900150 20 -  4147112 I
e caeSp111.Scaffold629 33095410 316 + 33334924 I

a score=-14164.000000
s ce10.chrX             2148765 42 + 17718866 GA---------------TATAACAAAAATTGT-----TACAAAATTT--ACAATAAAAATAACC
s cb4.chrX             13631196 57 - 21540570 TACACATCACTTTTTCCTGTAGTTAAAATTGG-----TTATTATTCC--TCTTTAAAactaaat
i cb4.chrX             C 0 I 52
s caeRem4.Crem_Contig0  4392715 57 +  4500979 GGTAAGTAATTAGT---GGTAGGGAGATATGGAAGAATCAGTACTCT--CGCTTATG--CAAAT
i caeRem4.Crem_Contig0 C 0 I 32
s caePb3.Scfld02_0      2900170 32 -  4147112 -----------------GATATAAAAACCAAG-----TCACTAATCT--ATTTAAA--------
i caePb3.Scfld02_0     I 20 C 0
s caeJap4.Scaffold4951    55193 30 +   152553 ----------------------CAAAAACTGA-----TTAGCGTGTTGAATTTTAAC-------
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33095410 316 + 33334924 I

a score=131119.000000
s ce10.chrX             2148807 168 + 17718866 TCCTACTCACCTGAACTTCGTGCAACATCCTTCTCGTATTGTGGTGGGGGTGGTACATCGTAATCTAGTGACGAACAAGAGAGAGAGGAAGGCGAGCCACTGTCGGATGTGTCTGGGTAGTAATAGGGATTGTACATACCAGCCTGAACAGGAAA--ATTTTGAA--------TATTC
s cb4.chrX             13631305 165 - 21540570 CCCGGCTGACCTGAACTGCGAGCGACATCCTTCTCATATTGTGGCGGAGGTGGCACATCGTAATCCAGTGAAGAGCAAGAAAGAGAGGATGGAGATCCACTGTCCGATGTATCCGGATAGTAATACGGATTATACATTCCGACCTGTA------------GTGAACTTTTGT-TTATC
i cb4.chrX             I 52 I 7
s caeRem4.Crem_Contig0  4392804 175 +  4500979 -CCGACTAACCTGAACTGCGGGCCACATCTTTTTCATATTGTGGTGGGGGTGGCACATCATAATCTAGGGATGAACAGGATAAGGAAGAAGGTGACCCACTGTCCGATGTGTCTGGATAGTAGTATGGATTGTACATGCCAAcctggaaaataga--aatggaaaataccgtataaac
i caeRem4.Crem_Contig0 I 32 I 7
s caeSp111.Scaffold629 33095726 166 + 33334924 TCCCACTGACCTGAACTGCGAGCAACATCTTTTTCATATTGTGGCGGGGGTGGCACATCATAATCTAAGGAAGAACAGGAAAGCGAGGAAGGTGATCCACTGTCAGAAGTGTCTGGATAGTAATACGGATTATACATGCCGACCTGAA--ATATA--AATGTCAA--------TGTAC
i caeSp111.Scaffold629 I 316 I 24
s caePb3.Scfld02_0      2900202 166 -  4147112 TCCCACTGACCTGAACTGCGAGCCACATCTTTCTCATACTGTGGAGGTGGTGGGACATCGTAATCTAAAGATGAACAAGACAGAGAAGAAGGTGATCCACTGTCAGATGTGTCCGGATAGTAGTATGGATGATACATGCCAACCTGAA--ATCGA--AATGTTAG--------TGAAc
i caePb3.Scfld02_0     C 0 I 22
s caeJap4.Scaffold4951    55223 170 +   152553 TTGAACAAACCTGAACTTCGAGCCACGTCTTTTTCGTATTGTGGAGGTGGAGGTACATCGTAATCCAGCGAGGAGCAAGAAAGACTAGAAGGAGAGCCAGAATCAGACGTGTCCGGATAATAGTATGGGTTATACATGCCAATCTAAACAATAAATCATTTTAAA--------TTCTC
i caeJap4.Scaffold4951 C 0 I 14

a score=0.000000
s ce10.chrX             2148975 14 + 17718866 AAAAAAATAAAGCC
e caePb3.Scfld02_0      2900368 22 -  4147112 I
e caeJap4.Scaffold4951    55393 14 +   152553 I
e cb4.chrX             13631470  7 - 21540570 I
e caeSp111.Scaffold629 33095892 24 + 33334924 I
e caeRem4.Crem_Contig0  4392979  7 +  4500979 I

a score=-1405.000000
s ce10.chrX             2148989 6 + 17718866 GGACTA----
s cb4.chrX             13631477 6 - 21540570 GCAATA----
i cb4.chrX             I 7 I 37
s caeRem4.Crem_Contig0  4392986 6 +  4500979 gaggtg----
i caeRem4.Crem_Contig0 I 7 I 149
s caeJap4.Scaffold4951    55407 6 +   152553 ----TAACCC
i caeJap4.Scaffold4951 I 14 C 0
e caePb3.Scfld02_0      2900368 22 -  4147112 I
e caeSp111.Scaffold629 33095892 24 + 33334924 I

a score=270998.000000
s ce10.chrX             2148995 593 + 17718866  
s cb4.chrX             13631520 605 - 21540570  
i cb4.chrX             I 37 C 0
s caeRem4.Crem_Contig0  4393141 558 +  4500979  
i caeRem4.Crem_Contig0 I 149 C 0
s caeSp111.Scaffold629 33095916 570 + 33334924  
i caeSp111.Scaffold629 I 24 C 0
s caePb3.Scfld02_0      2900390 550 -  4147112  
i caePb3.Scfld02_0     I 22 C 0
s caeJap4.Scaffold4951    55413 508 +   152553  
i caeJap4.Scaffold4951 C 0 I 163

a score=8814.000000
s ce10.chrX             2149588 21 + 17718866 GCTTTAATTATAGGACTATCA
s cb4.chrX             13632125 16 - 21540570 -----AATTATATAGAAGTTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4393699 16 +  4500979 -----AATTATAGGAGTATCA
i caeRem4.Crem_Contig0 C 0 I 59
s caeSp111.Scaffold629 33096486 16 + 33334924 -----AATTACAGGAGTATCA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2900940 16 -  4147112 -----aattataGGAGTATCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    55921 163 +   152553 I

a score=222.000000
s ce10.chrX             2149609 21 + 17718866 TATGCCAAAACTCG-AAATTCC
s cb4.chrX             13632141 20 - 21540570 --tgttcgaaattcgaaattcc
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold629 33096502 20 + 33334924 -TTGCAAAGAATTT-ACATTCC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2900956 18 -  4147112 -AAG--AGGAATGC-AAATTCC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    55921 163 +   152553 I
e caeRem4.Crem_Contig0  4393715 59 +  4500979 I

a score=454.000000
s ce10.chrX             2149630 5 + 17718866 AGGAA
s caeSp111.Scaffold629 33096522 5 + 33334924 ACAGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2900974 5 -  4147112 AGAAA
i caePb3.Scfld02_0     C 0 I 2
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161 1 - 21540570 I
e caeRem4.Crem_Contig0  4393715 59 +  4500979 I

a score=182.000000
s ce10.chrX             2149635 2 + 17718866 AA
s caeSp111.Scaffold629 33096527 2 + 33334924 AA
i caeSp111.Scaffold629 C 0 I 50
e caePb3.Scfld02_0      2900979 2 -  4147112 I
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161 1 - 21540570 I
e caeRem4.Crem_Contig0  4393715 59 +  4500979 I

a score=0.000000
s ce10.chrX             2149637 582 + 17718866  
e caePb3.Scfld02_0      2900979   2 -  4147112 I
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161   1 - 21540570 I
e caeSp111.Scaffold629 33096529  50 + 33334924 I
e caeRem4.Crem_Contig0  4393715  59 +  4500979 I

a score=539.000000
s ce10.chrX             2150219 12 + 17718866 CTGAGATGAAAG
s caeRem4.Crem_Contig0  4393774 12 +  4500979 CTAAAATGCAAA
i caeRem4.Crem_Contig0 I 59 C 0
e caePb3.Scfld02_0      2900979  2 -  4147112 I
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161  1 - 21540570 I
e caeSp111.Scaffold629 33096529 50 + 33334924 I

a score=107.000000
s ce10.chrX             2150231 10 + 17718866 GACTGAAAAT
s caeRem4.Crem_Contig0  4393786 10 +  4500979 AGTTGCAAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2900981  7 -  4147112 GACTGAA---
i caePb3.Scfld02_0     I 2 I 7
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161  1 - 21540570 I
e caeSp111.Scaffold629 33096529 50 + 33334924 I

a score=546.000000
s ce10.chrX             2150241 1 + 17718866 A
s caeRem4.Crem_Contig0  4393796 1 +  4500979 A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33096579 1 + 33334924 A
i caeSp111.Scaffold629 I 50 C 0
s caePb3.Scfld02_0      2900995 1 -  4147112 a
i caePb3.Scfld02_0     I 7 C 0
e caeJap4.Scaffold4951    55921 163 +   152553 I
e cb4.chrX             13632161 1 - 21540570 I

a score=-4181.000000
s ce10.chrX             2150242 17 + 17718866 ATTTGCAGGAGATTTGA-----
s cb4.chrX             13632162 17 - 21540570 atttccAGAGAATatca-----
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4393797 11 +  4500979 ------TAGGAATGCGA-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33096580 21 + 33334924 -GGTTgcagaaaaacgaattat
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2900996 11 -  4147112 -gtttgcagaaa----------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    55921 163 +   152553 I

a score=166437.000000
s ce10.chrX             2150259 760 + 17718866  
s cb4.chrX             13632179 802 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4393808 780 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33096601 814 + 33334924  
i caeSp111.Scaffold629 C 0 I 69
s caePb3.Scfld02_0      2901007 769 -  4147112  
i caePb3.Scfld02_0     C 0 I 77
s caeJap4.Scaffold4951    56084 791 +   152553  
i caeJap4.Scaffold4951 I 163 C 0

a score=-11298.000000
s ce10.chrX             2151019 38 + 17718866 CTTGA--AATTTGATTAAAT-TTGATTa--------------aatgtggtcaaat
s cb4.chrX             13632981 39 - 21540570 gttaT--AAGCTGATCTGggatttaaaa--------------gtttttttcaaac
i cb4.chrX             C 0 I 4
s caeRem4.Crem_Contig0  4394588 45 +  4500979 TGTATGAAAGATATTC-----TCCAGAAA-----TGACTCTTGTTTCTTTTATAC
i caeRem4.Crem_Contig0 C 0 I 11
s caeSp111.Scaffold629 33097484 51 + 33334924 TTCGT--AATCTGATCTAGA-TTTAtaac-aattttaaatttatttttttgatag
i caeSp111.Scaffold629 I 69 I 35
s caeJap4.Scaffold4951    56875 50 +   152553 TTAGG--AAGACAATTAT---TTTACAAGCAAGAATAGGTCAACAAAGTTAAAAT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2901776 77 -  4147112 I

a score=-12271.000000
s ce10.chrX             2151057 31 + 17718866 ------gaacgaattt---------------------------------------tgtaatgaaacatct--ttaaaa
s cb4.chrX             13633024 31 - 21540570 ------TTCAAAATTC---------------------------------------CATGATGATACCCCT--TAAaaa
i cb4.chrX             I 4 I 194
s caeRem4.Crem_Contig0  4394644 31 +  4500979 ------TATAAATATT---------------------------------------TAATCTGATCTAGAT--TTacag
i caeRem4.Crem_Contig0 I 11 I 3
s caeSp111.Scaffold629 33097570 72 + 33334924 ------CCCTATGCTTACCAACACAGAGGTGAATTTCCGACTATTCGTGTGGTCCTAGTATTGTTTAGGTTATTATAA
i caeSp111.Scaffold629 I 35 I 4
s caePb3.Scfld02_0      2901853 32 -  4147112 ------TTCAAAATTTA--------------------------------------TAATCTGATCTAGat--ttataa
i caePb3.Scfld02_0     I 77 I 4
s caeJap4.Scaffold4951    56925 34 +   152553 GAGCAAGTTAGTAGTTA--------------------------------------CAA----AAACGGTT--TTATAG
i caeJap4.Scaffold4951 C 0 C 0

a score=-6032.000000
s ce10.chrX             2151088 20 + 17718866 tt-----------tctcgaa---aaattgttcat
s caeRem4.Crem_Contig0  4394678 19 +  4500979 tt-----------ttcaaaa---tcatt-ttcat
i caeRem4.Crem_Contig0 I 3 I 10
s caeSp111.Scaffold629 33097646 31 + 33334924 ACG---GAGATGGTTTCAAATGCTAATTATGCGt
i caeSp111.Scaffold629 I 4 I 29
s caePb3.Scfld02_0      2901889 20 -  4147112 tt-----------tttcaaa---tcatttttcat
i caePb3.Scfld02_0     I 4 I 132
s caeJap4.Scaffold4951    56959 18 +   152553 --GTGTGGGTAGGTGTTAAA--------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13633055 194 - 21540570 I

a score=-15535.000000
s ce10.chrX             2151108  95 + 17718866 ---agtggttcaaaaaattggccaaaattggaga------------ttttagataaaattaggcagccatttt----ttaatc----gaaattttgaactactttta--------------aaacttttaa-------------a
s caeRem4.Crem_Contig0  4394707 117 +  4500979 ----GGGGGCGCAAAATC--------TTTGTAGGGTGGGTCTATTCTTACAGCTAGAGCT-AGTAGCTTAAATCA--GTTATCCGATAAATTCCTGGATTAACTCCTCCACCTCCACTTCTTAACTTCGGA-------------T
i caeRem4.Crem_Contig0 I 10 C 0
s caeSp111.Scaffold629 33097706 119 + 33334924 ---aatgattttcaaaac--------aatggGGAGTGTTGCAatcatttcggaaaaaattgagaaactattttcaagGTAATCCAGAGga-----gaatcaattttt----------tactgaaattCGGAATATAGGTTAAAGT
i caeSp111.Scaffold629 I 29 C 0
s caeJap4.Scaffold4951    56977  90 +   152553 TCTAGtgg-----aaaaa--------atcataaaaaggTGGGATCttt------aaaat------gcttttttt---ttcatt----cacaATTTGTATCAAGTATT---------CCTAAAGAGTTCAAA--------------
i caeJap4.Scaffold4951 C 0 I 62
e caePb3.Scfld02_0      2901909 132 -  4147112 I
e cb4.chrX             13633055 194 - 21540570 I

a score=-1444.000000
s ce10.chrX             2151203 25 + 17718866 gaaaa---------------ttttgagaatttttattact-----
s caeRem4.Crem_Contig0  4394824 25 +  4500979 AAAAA---------------TGTTATTAGTTCGAATTTCG-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33097825 45 + 33334924 AAAGAAATTGTGAAACGGCCTGTGAAAAGTTAGTAGTTCAGTATA
i caeSp111.Scaffold629 C 0 I 18
e caePb3.Scfld02_0      2901909 132 -  4147112 I
e caeJap4.Scaffold4951    57067 62 +   152553 I
e cb4.chrX             13633055 194 - 21540570 I

a score=-5184.000000
s ce10.chrX             2151228 24 + 17718866 --aaattc------------------------------------tatacgttcaaaatcgtt
s caeRem4.Crem_Contig0  4394849 15 +  4500979 --AAGGCC------------------------------------TATTCaaat---------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33097888 62 + 33334924 AGATGATCCCTCCACCTCCACGCCTTAAAAACGGATAAGAATGTTATTAAAGCAATATTTCT
i caeSp111.Scaffold629 I 18 I 13
s caePb3.Scfld02_0      2902041 24 -  4147112 AAATGA--------------------------------------TATTAGAGCAAAATATCT
i caePb3.Scfld02_0     I 132 I 13
e caeJap4.Scaffold4951    57067 62 +   152553 I
e cb4.chrX             13633055 194 - 21540570 I

a score=-9154.000000
s ce10.chrX             2151252 44 + 17718866 agaaAACTGTCAAATGTTCGAACAATTTCAAGTT----------TTTCTGCAGA
s cb4.chrX             13633249 26 - 21540570 AGGAGGAGGTCGAATGGGAGgaaaac----------------------------
i cb4.chrX             I 194 C 0
s caeRem4.Crem_Contig0  4394864 33 +  4500979 ---ataaagttaaagagaagaaaaat------------------ctgtcacaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33097963 46 + 33334924 -aaaagattttcgaaagtcGTTAAACTT-Gagttcgaa------tcgaaaaaaa
i caeSp111.Scaffold629 I 13 C 0
s caePb3.Scfld02_0      2902078 49 -  4147112 -aaaaagttttcaagaggTTTTaaat----agtttgaaattttgttagTATaag
i caePb3.Scfld02_0     I 13 C 0
e caeJap4.Scaffold4951    57067 62 +   152553 I

a score=398171.000000
s ce10.chrX             2151296 1461 + 17718866  
s cb4.chrX             13633275 1478 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4394897 1455 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33098009 1435 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2902127 1470 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    57129 1540 +   152553  
i caeJap4.Scaffold4951 I 62 I 282

a score=19395.000000
s ce10.chrX             2152757 31 + 17718866 CGCACGAGTAAAATTGCGGCAAA--TCGCAACA
s cb4.chrX             13634753 33 - 21540570 CGCGTGAGTAAGAATTGGGCAGATCATGCAACA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4396352 31 +  4500979 CGCATGAGTAAGAAATGGGCAGA--ATGCAACA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099444 31 + 33334924 CGCGTGAGTAAGAAACGGGCAGA--ATGCAACA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2903597 31 -  4147112 CGCATGAGTAAGAAACGGGCAAA--ATGCAACA
i caePb3.Scfld02_0     C 0 I 152
e caeJap4.Scaffold4951    58669 282 +   152553 I

a score=-884.000000
s ce10.chrX             2152788 3 + 17718866 CAG--
s cb4.chrX             13634786 3 - 21540570 TGG--
i cb4.chrX             C 0 I 1002
s caeRem4.Crem_Contig0  4396383 3 +  4500979 CGG--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099475 3 + 33334924 --GTA
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2903628 152 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I

a score=-852.000000
s ce10.chrX             2152791 52 + 17718866 --------GAGGATGGTTGGGATACGAGTCTTCAGAAATGGTCAACCAGTATTTTGAATT-
s caeRem4.Crem_Contig0  4396386 46 +  4500979 ------GAGAGAATGAGAATGAAAGCAGT------AGTTAGTTAGT---TATTTCAGAATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099478 47 + 33334924 TGACACGAGAAAATGAGACGAAATGTGG----------TAGTTAGT---TATTTCAGATT-
i caeSp111.Scaffold629 C 0 I 301
e caePb3.Scfld02_0      2903628 152 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I

a score=-850.000000
s ce10.chrX             2152843 108 + 17718866 AAAGTTATAAGTTGCAGATAGAATTGGCAAAGTTAACCAGGAGCGTGcggcaatcgcagttcggcaaatgtaatttcggcaacttcggcagttgccgaaattgccgcg
s caeRem4.Crem_Contig0  4396432  66 +  4500979 ---GCTGCGATCTACATTTA------------------------------CACTCGATGTTC--CGAAAGAAA---CGGAA----CGGTGGTTAGTGAAAGAAACGCG
i caeRem4.Crem_Contig0 C 0 I 166
e caePb3.Scfld02_0      2903628 152 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099525 301 + 33334924 I

a score=0.000000
s ce10.chrX             2152951 3 + 17718866 cat
e caePb3.Scfld02_0      2903628 152 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099525 301 + 33334924 I
e caeRem4.Crem_Contig0  4396498 166 +  4500979 I

a score=-1167.000000
s ce10.chrX             2152954 218 + 17718866 ccctgATTAAGACAGTAAT---TTTAAAGTTGCCGTATTTATACCGATTTCTCAATTAGTACTGGAACTCTATGCTCAATTTGAAATGTCTCGGTTTTAGTTTTGATCAAAAATTTTCAAACAGCACAAGTAATTTGTTTTTTTTTTTCAAAATATTGTTTTGTAATGAATTATTTCTATTGTATATTTTCAACCTAAACCTTTCAAAG--------GTGGAGTGTGGA
s caePb3.Scfld02_0      2903780 161 -  4147112 ccataacaaaaacaataataatcaTAAAGTTGgtg-------------------agaaaaactgaaagtggAG--TCAGTTAGAAAAGT--------------------AAAAGTATGAA--------------------TTTATTGTCGCAATGTAGAAAAGTAATAGAGC-------TCATAGATTACCAACATGAACGTTAGCTAGACAATCTAGAGCAATGTAGA
i caePb3.Scfld02_0     I 152 I 140
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099525 301 + 33334924 I
e caeRem4.Crem_Contig0  4396498 166 +  4500979 I

a score=0.000000
s ce10.chrX             2153172 9 + 17718866 AGTCGGTCA
e caePb3.Scfld02_0      2903941 140 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099525 301 + 33334924 I
e caeRem4.Crem_Contig0  4396498 166 +  4500979 I

a score=-208.000000
s ce10.chrX             2153181 73 + 17718866 AAAAAACATTTTCTACGATTTTTGTACTTCATGCGACTTCGCTCCGGATTTCCTTAAAACCGGAATTTTTTTT
s caeRem4.Crem_Contig0  4396664 58 +  4500979 AAAAAACGTCATGTTAGATGTCGGTTTCTTA-GTGACTAG------------TGTAGAACCAAAAACTCTT--
i caeRem4.Crem_Contig0 I 166 C 0
e caePb3.Scfld02_0      2903941 140 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099525 301 + 33334924 I

a score=406.000000
s ce10.chrX             2153254 37 + 17718866 CAAAAAATTGAAAATCTACCAAAAACTGAAGGGAAGT
s caeRem4.Crem_Contig0  4396722 27 +  4500979 ----------AGAGATCAGTGAAAATTCGGAGGATAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099826 32 + 33334924 caaaa-----aaataatactcagaaatgaagagaaat
i caeSp111.Scaffold629 I 301 I 17
e caePb3.Scfld02_0      2903941 140 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I

a score=-582.000000
s ce10.chrX             2153291 34 + 17718866 TTCCAAAAAGTGACAAAAACTGAGATCGaaaatc
s caeRem4.Crem_Contig0  4396749 27 +  4500979 -----AAATTTAGCAGTAATTAGTTTTTAT--CC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2903941 140 -  4147112 I
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099858 17 + 33334924 I

a score=-44.000000
s ce10.chrX             2153325 8 + 17718866 atataaaa--
s caeRem4.Crem_Contig0  4396776 8 +  4500979 GAGTGAAA--
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2904081 8 -  4147112 --ataaaaac
i caePb3.Scfld02_0     I 140 C 0
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I
e caeSp111.Scaffold629 33099858 17 + 33334924 I

a score=-33801.000000
s ce10.chrX             2153333 216 + 17718866 tttagaaaaaattgatttttttaatttatgatatttggtcattgtggtgccataaggcaAAAAGAGCT-----------------TTTTCTCGA----------------------------------------GACTTCAAGACGGTAAAAAGCGTATTCTCAGTTTGCATGGCGTCCTCTACATCTACAGTAATATGAGTATTTTCGAAGCAATTACTCAAATTGAATAACTCAATCAATTGCTAAGAT---AGGACC-----------------TAGAAATCGACGACAT
s caeRem4.Crem_Contig0  4396784 200 +  4500979 CTTGAAAGcgattgaacttt----tttctaaaaattcacagtttt----------tgcaaaaattgataactgTTATAACAGTGATCTTggtaa----------------------------------------aacaaaaatata-------------------------------aataggAATGcttagctacagtaatccgagaTAA-AAG-----GAAAACATGCAATTGGAATGATA-TTCAAGTCGGAATGATAAGAAGGTTTAGAAAGAAAGGATTTAAATGCA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099875  96 + 33334924 ---tacagtaa--ga-----------actGCTGATT---------------------CAAGAGGAG-------------------CTTCTTTGA----------------------------------------ATCTAACAGATG--------------------------GCTGGAATATAAA-------------------------------------------ACAATGGAATCA--------------AGAGAT-----------------AAGAAATCAGATGAA-
i caeSp111.Scaffold629 I 17 C 0
s caePb3.Scfld02_0      2904089 214 -  4147112 ttttaaaat-----------------tctgaagatt---------------------ctagaagtgg-----GTTCGCGCTCTGACCCCATTGAAAGTAAAGCAGACATTACACCATGGGCGGTACTCAAGTTGAGCTACCAGATG---------CTATCATGAGCCATTATGTCGTGATCCAAACGCTCTGTTATCATAGTCTCTTCTAA-CAGTCCCAGAGATTAGAAAATCACATCAGTC-CTCAACT---AGTGAT-----------------AAGGATTCAG----A-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    58669 282 +   152553 I
e cb4.chrX             13634789 1002 - 21540570 I

a score=-322.000000
s ce10.chrX             2153549 14 + 17718866 GTGCC---GCGTAT-TGC
s caeRem4.Crem_Contig0  4396984 17 +  4500979 GTGCCATTGAGTAT-GGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099971 14 + 33334924 GTGAT---GAGTAC-GAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2904303 15 -  4147112 GTGCC---AAGTACAAAt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    58951 11 +   152553 GTGCC---GATGGC----
i caeJap4.Scaffold4951 I 282 C 0
e cb4.chrX             13634789 1002 - 21540570 I

a score=379431.000000
s ce10.chrX             2153563 856 + 17718866  
s cb4.chrX             13635791 932 - 21540570  
i cb4.chrX             I 1002 I 112
s caeRem4.Crem_Contig0  4397001 839 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33099985 819 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2904318 840 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    58962 793 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-27176.000000
s ce10.chrX             2154419 159 + 17718866 CTCTTGTTATAAGTTTCC-GGCCCTAAATGGGATTT--TCGACAAGaaaaataaaa--------aaaataaaa---------attCATATCAAATCGCC-------------------------ACTCTCGACAGA------GAATTGAATC---------AAAAA--------CTATTGAATAACT-------------AAGCTGAA-TAATTTGAGTCAATGACG-----GAAGAGAATA----TGGC
s caeRem4.Crem_Contig0  4397840 220 +  4500979 CTCTTGTTATAAGCTTCC-GGACTCAAATGGGGTTCgat---aaaatgagaaagaa-atctgg-aaaacaaa----------aagaatacAAAAGGGTTCAGATCTTTATCCCCAAATGTTTTGATTGTTATAAGATCTGTCAGTTCGGATATCAAAAATGTTGCA--------TTTCTGGACACCT--GAAAGGCAGACACAATGAA----GATGACACGATgacagaatgaaaaaaaaaactagcgGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33100804 198 + 33334924 ctctttttcttagTTTCCGGGCCTCAATTGGCATCc------gtggagagaaaaaacaccTAG-ATGACGTGACAAGAGTcaagttagaaaaaaaggctc-----------------tgatttgaatgaattctgaC-----AGATTGGATAT-----GTGTTGCA----------ACTGGACACCCAGGAATGGGGGACACAGTGGATGAAGGTGACACGGtgaagc----aaagaaaaaa----cggc
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905158 219 -  4147112 TTATGGTCATAAGTTTCCGGGACTCAATTGGcattcaatcaaaaagaaaaaaaaaacacctaaCATAAAGAAGCggaag---agatagagaaaatcGTTCGA------------GAACGCTATGATTCGCTTCAAATCTTTTAGATTAGATA---------CCTCAAGGTGTTGCCACTGGACACCT-TGAATACGGGACACAATGAA--ACATTGATGCGATgaagcttcgaaaaaaaaga----cggC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    59755 110 +   152553 -TCTtattat---------tcacagaaccagcaaaa------aaagcaaaaaaaaa--------aaaacaaaccagcaa---aaaaatttgtgaaaattcgG-------------------------------AGAC-----TGCTCCGATC------CATCTGAA--------ACTtcgggaaatc---------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13636723 112 - 21540570 I

a score=31650.000000
s ce10.chrX             2154578 163 + 17718866 ATTCA-GAACGGTTATAAA--------------GTCTTGATTGTTC-----------------TGAGT--------AGTGGAGGCCAAATAG----CTACCGTCTTCTCGAAAAGGT---GAA------CATGAGTAACACTTAATGAATGCGTGACATATTGTCAGAAGCTTC-TAGTT---TCTGAA--AGTTTCAATGAGTCAGCTGATCAA---TGATG-----------TC
s cb4.chrX             13636835 185 - 21540570 ATTCGCGAACGGTTATAAGTAGGCTGATGGAAAGTCTTGATGATGT-------------CGCATGAGTAACa----gaagaaagacaaaaaa------actgTCTACTTG-AAAGGT---GAACATATTCATGAGTAACACTTAATGA---CGTGC-------------CCCCAGAAGCT---TCGGAAA-CTATTCAATGAGTCAGATGATTG----Tgatgtttctagaaaatc
i cb4.chrX             I 112 C 0
s caeRem4.Crem_Contig0  4398060 181 +  4500979 ATTCA-GAACGGTTATAAGTAG-----------GTCTCGATCATACTTTCATTTGGGAATGTATGAGTAACAATGTAGCGGAGGACAAATGA------ACTGTCTACTTG-AAAAGT---GAA------CATGACTAATTCTTAATGG---CGTGCGA--------GAAGCTgaatagtt---tcagaaa-atctac-ATGAGTCAGCTGATGGGTCATGATG-----------TC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33101002 178 + 33334924 ATTCA-GAACGGTTATAAGTAG-----------GTCTTGATCATCT----CATTGA------GTGAGTAACAATGCAATGGAGGGCGAATGGAAGAATACGCTCTCCTTG-AAAGGT---GAA------CATGAGTAACACTCGATGA---CGTGCCAAAT-----GAAGCTGAATAGTT---TCAGAAT-AGTTGCAATGAGTCAGGTGCTTAG---TGATG-----------TC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905377 184 -  4147112 ATTCA-GAACGGTTATAAGTAG-----------GTCTCGATCATCT----GAATGGGA-TGCGTGAATAACAATGAACCGGAGGGCAAATGAATGAATACTGTCTCCTTG-AAAGGT---GAA------CATGAGTAACACTCAATGA---CGTGTCAAAT-----GAAGCTGAATagtt---tcagaagaagtttGAATGAGTCAGCTGATCGG---TGATG-----------TC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    59865 124 +   152553 -----------attaaaaaata-----------ctcccgatcattc---------------cctgaaa--------atttcagagcaaa-------atatcgacttttca-acattttcagaa------aataatcGATAC--ATTTA------------------GAaac--aatatttcggtctgaa--attttc---------------tgg---gaatg-----------tc
i caeJap4.Scaffold4951 C 0 I 64

a score=-24657.000000
s ce10.chrX             2154741  89 + 17718866 ATAGT--------TGAAGCGAAGA---ATTTATGAATAGTCCTTAGCA-GGGGTGC-----------------------GCGGAAATTGGCGACcagcagttcgacaaaatgtgatagttgggc
s cb4.chrX             13637020 115 - 21540570 gCATTGTTCTGATTGAGGTCGAAA---ATATGTGGACAAGATTTTCTA-TGATTGCTATCTCTAAAAATTCCTACTGTACTGGAAAAAAG-----ATTAGTTTGATTTGTTAAGTGGAAGAGGC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4398241  41 +  4500979 ACA-TATGCCTATT----TCAAGA---ATATGAGAA----------TA-TGACTGT----------------------------------------------------------------AGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33101180  42 + 33334924 ATCAT-------------TCGAGA---ATATACAGT----------TAGGGGTGAC---------------------------------------------TTGAAATG-----------AGAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905561  37 -  4147112 ATAAT-------------TTATGAATGATGTATAAT----------TA-AGACAGT---------------------------------------------TTGAG------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    59989  64 +   152553 I

a score=-10840.000000
s ce10.chrX             2154830 34 + 17718866 atggtctcccgatacattt-catcaaaattttatg
s cb4.chrX             13637135 27 - 21540570 AG-------TAGTATACTG-TAGTCAAATTTGTAG
i cb4.chrX             C 0 I 55
s caeRem4.Crem_Contig0  4398282 20 +  4500979 AT---------GTACATTG------AAGTTTGGTG
i caeRem4.Crem_Contig0 C 0 I 70
s caeSp111.Scaffold629 33101222 21 + 33334924 AT-------TAGACTACT-------AGACATGATG
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2905598 13 -  4147112 ---------------AAT-------AGATATGATT
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951    60053 22 +   152553 -------------ataatcttcccaaaattttgca
i caeJap4.Scaffold4951 I 64 C 0

a score=-28566.000000
s ce10.chrX             2154864  96 + 17718866 atataatatatatgt----------agagaaatatttgctttatctgaaa---ataactttta--------ttttataatagttggaaaattgggaacattttc---------------------------------aaaactcgtctga---
s cb4.chrX             13637217 140 - 21540570 caataaaatgaaaacttcagattttggattgacaactttttttttcgaaa---aaatccaataaaacaAGAT----GAACAGTTGGAAACTGACCCAACTTTTCCTTTAGGGAcaatttccccatttttctgtTAGAAACa---gtataa---
i cb4.chrX             I 55 I 2
s caeSp111.Scaffold629 33101245  49 + 33334924 GTGTGAAGAGATCAC--------------------------------AAATCTATCTCAGAGA---------------------------------GGCATTTC---------------------------------TACA---GTATGC---
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0      2905613  42 -  4147112 GGATAATATGAATGC--------------------------------AAA---AGGTCAGACA-------------------------------TCAGAGTTTC---------------------------------AAGA------------
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold4951    60075  68 +   152553 --------------------------------------------aGGCAG---AAATCAGTCA--AAGAAATTTGAATATGTTTCGAAAGTTCGTCAAATTTCT---------------------------------AAAG---ATGGATCCA
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4398302  70 +  4500979 I

a score=-50559.000000
s ce10.chrX             2154960 100 + 17718866 --------------atgttgaaaattgccaaac----------------aatttattg------gcatttttcgctggatttttgagcactttctctgttgttccaagccaaataaaaat------------------------------------------------tattcccatacagagc
s cb4.chrX             13637359 153 - 21540570 --------------aaattaaagttggcaaaaaaattttcaatcccAACAATTCAGAT-------TGTTTATGTTTag-----tgaa-atttgaact----tttcgaagcaatcgaaaaaattgacacCCACAGTTTATTATTCTCTATCAGAATGACCCCTTCCCAATTTTTGACTacgaatc
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4398372  59 +  4500979 --------------ATATTGAA---------------------------AATTCACAC------GCGGCTTTGTT------------------------------------ACCGAGAAAG----------------------------------GAATTTTTCCCATTCTTT--------ATA
i caeRem4.Crem_Contig0 I 70 C 0
s caeSp111.Scaffold629 33101294  56 + 33334924 --------------ATATTGCCCTA------------------------AATCTactt------ccttttttgtc--------------------------tctCAGTTGAATTAAGAATA-----------------------------------------------TACTT-----------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905655  20 -  4147112 ---------------------------------------------------------------------------------------------------------AATACAACTGAAGAT------------------------------------------------TTCTT-----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    60143 105 +   152553 ATGGTCATggaattattttaggatttaCCGGATTGCGTAGCCT------AATTCATCTTGACAGATgtgtttctt--------------------------tttcaaaaccacaaaaaaat-----------------------------------------------tgcgtctGGACAAATT
i caeJap4.Scaffold4951 C 0 I 273

a score=-52286.000000
s ce10.chrX             2155060 331 + 17718866 aaataatcatctaca---tacattatattatataattgtaataaaaaaatgtATTTAGTAACCTGTTAACGTTTTTCGTATAAAAACGTTAGATATAGGAACTCTTATTAAACGGAAATTGAGGATATTTCA-----AAATGAAGGGGAATTCGATTAAAAATTTTAAAACACATGTAATAC--AGGA---AATTGCGTTATTGGCCAAAAAAAGACAGAACATATTGGTTTTCGATTTTTATCCAGACTTTTGGAAAACATTAACATTTTATATTTCAATCAGAATGAACTTAGAAAATGTTATTATTAAACTTTGT--ACAATCACAATTTAATCAGAACATAC
s cb4.chrX             13637512 261 - 21540570 aatttttcatggttcctgtgaaagatatcatcagattgt-ctactgataaattgtttgtcatgaTTTTACCAATGTTCTATAAATCAAcagattttagata-tctttt---acaggaatcgagaa-atttgagctcaaaattgacgg-------------------------tcaGAGTGAC--AGGAATTACT----GTATTATCCAATACAAG-------TTTTGGagtttcaaagattt-----------caagattttcgagttttaaaaaatg------------ctgaaaa------------------tatcagTAGTCACAATACAATCAGAATCGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4398431 180 +  4500979 AACT--------------TGAATGAGAT-------------------------------------------AGTGGCACAGAAATTCTCAGGTAATGAAAACTCTTTC---ACAGT-----------TTTTA--TGAACATGAACGG--------------------------AATAGTGGC--ACGA---AAG----TTCTCACACaaaaaaaG--------CACAGAGCATCAAAACTTA-----------TGTAAATGTGGTTCATTGATATTTG-------------------------------------TAT--ATAATCACAATTCAATCACAACgtga
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33101350 115 + 33334924 ------------------TGGA------------------------------------------------------AAAACAAgtacttttgtttttcaaa--------------------------tattt-------------gg-------------------------attgaaatac--aaaa---aac----agggtgttc----------------------------------------------aaagaaaatttatgACCGAATTAT--------------------------------------TAT--AAAATCACAATTCGATCAGAACgtga
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905675 153 -  4147112 ------------------TGGAT----T-------------------------------------------AGTATGATATGAGTTACCTGAGTTTGAAGA--------------------------TCCTA-------------GG-------------------------TAAGAAAATCTGAGGA---AAC----TAGCTATTCATGATAGG--------TGCATTTTTtagatgatga----------aaatgacaATAAATCATATAAGTATA-------------------------------------TAT--AGAATCACACTTTAATCAGAACatgg
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    60248 273 +   152553 I

a score=217694.000000
s ce10.chrX             2155391 654 + 17718866  
s cb4.chrX             13637773 617 - 21540570  
i cb4.chrX             C 0 I 66
s caeRem4.Crem_Contig0  4398611 621 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33101465 589 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2905828 614 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    60521 467 +   152553  
i caeJap4.Scaffold4951 I 273 C 0

a score=-20256.000000
s ce10.chrX             2156045 110 + 17718866 AATCGAAAACCACCAAAAAAAAAA--------------AACAACTAAAAG----CTTTAGATGGTCACATAATTTCACGTATTCTTTATGACATATAAGTAATGCAATATTTGATGAACCGTTAGAAA
s caeRem4.Crem_Contig0  4399232  81 +  4500979 GATTGAAAAC---------GGAAACTGAAAGCGTAAATAGTAATCGAAAA----CTTTAACT--------------------------TAACCTAGAAGAAAAGTAAAATCTAG--------TAGAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33102054  53 + 33334924 AAtcgaaaac---------ggaaa--------------agaacaagaaaaagcgTTGTA----------------------------------TAAAAAATGGGTTGAAC------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2906442  40 -  4147112 -actggaaag---------aaaga--------------agaaaacgaaaa----ctata----------------------------------tacaaaata--------------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    60988  40 +   152553 ------------------------------ATGGTCACGTTTGTTAAAAG----ATTTG----------------------------------TCGAAACTATGTATT--------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13638390  66 - 21540570 I

a score=-3799.000000
s ce10.chrX             2156155 14 + 17718866 ATTCAATT-CATCTT-
s cb4.chrX             13638456 14 - 21540570 ATCTAGAT-CATCCT-
i cb4.chrX             I 66 C 0
s caeRem4.Crem_Contig0  4399313 11 +  4500979 ----AGACACATCTT-
i caeRem4.Crem_Contig0 C 0 I 59
s caeSp111.Scaffold629 33102107  3 + 33334924 ------------TTT-
i caeSp111.Scaffold629 C 0 I 1
s caeJap4.Scaffold4951    61028 10 +   152553 ------ATACATCATC
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2906482  0 -  4147112 C

a score=-19846.000000
s ce10.chrX             2156169 82 + 17718866 TAAGGTGGAGAACCCAGTatttagaaattatagaccac----------gaaatgaagag-----atttcaaaatgaaacttctcgaaaattgttttg
s cb4.chrX             13638470 49 - 21540570 ------------------------AAACTAGTGACCCTCCGTGGTGAGAGAAT-------------TTCA-----------CGCTAGAGATATCTTG
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33102111 36 + 33334924 TAAAGTA-------------TCAGAAACAGC---TCCT----------AAAG--------------------------------TAAA---ATGTTG
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2906482 33 -  4147112 ---------------------caaaaacaaccaaccct----------gaaac------------------------------CCATA---AGCTTA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    61038 33 +   152553 --------------------------ACTATAAACCTT----------GAAATGAACAGCCCGTacttg----------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4399324 59 +  4500979 I

a score=-29698.000000
s ce10.chrX             2156251 81 + 17718866 gaaattttaatggcggtgtaaagtt-----ttgaaaaaaatgacct----aattt----tgattaaaatctccaatGACGCATTAGTTCAAAGT
s cb4.chrX             13638519 35 - 21540570 GAGAA------------------GG-----CCCGAAAAAAGCGCTG----AA--------------------------------CGGCGTTATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4399383 53 +  4500979 GAAAATTTCACGCTAG----GCTTG-----TCAGAGATATCTACTGAAAAAA--------------------------------CGCCTTTATT
i caeRem4.Crem_Contig0 I 59 C 0
s caeSp111.Scaffold629 33102147 36 + 33334924 --AAA---------------GCGGT-----TTGAATCAAAGCAGTG----AC--------------------------------CGTTGGAAGT
i caeSp111.Scaffold629 C 0 I 86
s caePb3.Scfld02_0      2906515 51 -  4147112 --GAATTCGCACTCAT----ACGGTTATTCTTGGATAATATGACTG----A---------------------------------CGTTCAATGC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    61071 70 +   152553 -aaaacttgaa---------acgCA-----ACAAAATGAAACAACG----AAATGCATATGAGTAGAATATAAcagaat-----aacaaaaaat
i caeJap4.Scaffold4951 C 0 C 0

a score=-37714.000000
s ce10.chrX             2156332 168 + 17718866 TGACTTTTTTGAACTATAAC-----CTTAgagaaattggagatattagcccaatt----------ttttttcgaagttttga----tcgtcattaaaaattatgaaactttttttgagaagtttcatttcaaaattcgtcaagttaagcgcatttta---agcctatacgttcaaaCTTTGCGTTATTTA
s cb4.chrX             13638554  30 - 21540570 ------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTC---ACTCTAT-------CTCTCTCCGCTAGCTA
i cb4.chrX             C 0 I 7
s caeRem4.Crem_Contig0  4399436  29 +  4500979 ------------------------------------------------------------------------------------------------------------------------------------------------------ACTCTTT----CCCAAC-------TACTCTCCGCTACCCA
i caeRem4.Crem_Contig0 C 0 I 7
s caePb3.Scfld02_0      2906566 116 -  4147112 -----AGTGTAAACCAAAAC----------------------TAGTGACCC------------------TCCGTAGT---------------GTGAAAATT-TCACGCT----------AGGTTTGTCAGAAGATTTGTTGTAGAAAAAGCCTCTTTATTACCTTATCCG---ACACTCTCCGCTATCCA
i caePb3.Scfld02_0     C 0 I 9
s caeJap4.Scaffold4951    61141 134 +   152553 ---------------atagtGTTTGcttaaataaattgaaaaaagtaaataacTTATCTATATAATTCTCTATTAGCTATGAGACCTTATCCTTGAAAATACATAAACTGtt--------------------------------------acttttc---atttttccatttGAGAGACTGTAGTACCTC
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33102183  86 + 33334924 I

a score=173188.000000
s ce10.chrX             2156500 319 + 17718866 TTTGCT-----ACTTTCATGGAGGTAAACTGTTAGA-AAAACGAGGATC--------CATCCAAGTTTTCGGCGGGTGTAATAATTTCTCACCCAATATATTTAAGATGCATA----------TCCT------------CCTCTTGTTCTCATACTC-TCTGGTCGTGGATGTGTTTCACCCAAAATGACTGATGAGTGGTTGTAGGAAAGTTGCT---AGATT---GCGTAA--ACATCCCT------CAAGCGGTACA----GAAATGGAAAG-CCATCCACGGGGG-CTGA---AAAACGTGTCACACAAACC--CCAGG--AGAAATGAACATGATG-AACAGACTCC---GGGGGTGTAAT-GGAACTTTCTCATTTAGCGTC
s cb4.chrX             13638591 325 - 21540570 TATCCC-----ACTTTCATGTAGGTAAACTCTTCTATAAAACGAGGATCCTCTCTCTTCTTCAAGTTTTATGTG-------TAATTTCT-------CACATTTGAGATGGATGCATATCCCTTTCCAAACCACTATGTACCTCTCACTCATTTACTCACCTGGTCATGGATGTGTTTCACCCGAAATGACTGATGAGTGGTTGTCGGAAAGTTGCT---AGATTTACGCGTAAACACATTTGATATCCGTGTGAGGTACACACTGAAAATGAAAG--------CTAGGTGctga---aaaa-agg-------------ggaag--aa---------tGATG-ATAGGCCAGA---CAAAGTGTAAGAAAAACTTTC-CATTTGGCGCC
i cb4.chrX             I 7 C 0
s caeRem4.Crem_Contig0  4399472 297 +  4500979 TTTCTC-----ACTTTCATGGAGGTAAACTCTTATA-AAAACAAGGATC--------TAACCAAGTTTTATGTG-------TAATTTCTCACCCGACACATTTGAGATGAATA----------TCCa--------------tctcactctctttttc-tctggtCATGGATGTGTTTCGCCCAAAATGACTGATGAGTGGTTGTAGGAAAGTTGCT---AGATT---GCGTAA--ACATTTGA--------AGCGGTACA----GAAACTGAAAGCTGATC--CTAGGT-CTAA---AAAA-GTGTCATTCTGGCC--TAAAG--AG---------TGATGAACCTGACCGC---CAGGGTGTAAT-GAAACTTTC-CATTTGGCGCc
i caeRem4.Crem_Contig0 I 7 C 0
s caeSp111.Scaffold629 33102269 299 + 33334924 TTTCTC-----ACTTTCATGGAGGTAAACTTTCATA-AAAACAAGGATA--------TAACCAAGTTTTGTGTG-------TAATTTCTCACCCGATACATTTGAGATGCATA----------TCCc----------cttctctca------ttctc-tctggTTATGGATGCGTTTCACCCAAAATGACTGATGAGTGGTTGTAGGAAAGTTGCT---AGATT---GCGTAA--ACATTTTC-------AAGCGGTACA----GAAATTGAAAG-CTATC--CTAGGC-CTGA---AAAA-GTGCTTGTCGCACCTACAAAG--AG---------TGATG-AACAGACCGCCGTTAAGGTGTAAT-AGAACTTTC-CATTTGGCGCc
i caeSp111.Scaffold629 I 86 C 0
s caePb3.Scfld02_0      2906691 299 -  4147112 ttcaac-----actttcatGGAGGTAAACTCTTATA-AAAACAAGGATC--------TAACCAAGTTTTATGTG-------TAATTTCTCACCCGATACATTTGAGATGCATA----------TCCC-------------CTCTCAC-----TTCTC-TATGGTCATGGATGTGTTTCGCCCAAAATGACTGATGAGTGGTTGTAGGAAAGTTGCT---AGATT---GCGTAA--ACATTTTC-------AAGCGGTACA----GAAATGGAAAG-CTATC--CTAggt-ctgaaagaaaa-aacagtgtcGCATCACCCAGGTAAG---------TGATG-AAGAGACCGC---TAAGGTGTAAT-GGAACTTTC-CATTTGGCGCC
i caePb3.Scfld02_0     I 9 C 0
s caeJap4.Scaffold4951    61275 278 +   152553 TTTACAAATAGACTTTCACGGAGGTAAACTTGTG-A-AAAACGAGGATC--------TAACCAAGTTTTGTGTG-------TAATTTCTCACCTCAAAAAAGTAGGATGCATA----------TCCT--------------TCT--------------CATGGTCATGGATGTGTTTCACCCAAAATGACTGATGAGTGGTT---GGAAAGTTGCTGTGAGATT---GCGTGT--AAACACAA--------AGCGGTACA----GAAATGGAaag-ctttt--cttttt-tgga---agaa-aaacgtGTCAC-----TCTAG--GA---------TGATG-----GACTCC---CTA-GTGTAAT-GGAACTGTC-TGTATGGCGTC
i caeJap4.Scaffold4951 C 0 I 153

a score=7847.000000
s ce10.chrX             2156819 41 + 17718866 GGAATCGCTTTGTTTTGTAAG--------TTGATCCCCGTGTAGGTTGG
s cb4.chrX             13638916 49 - 21540570 tggaccacttttttttgggcTGGGACGAACTGATCTTTTTGTAGGTTGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4399769 35 +  4500979 aag------tttttttgagat--------ttgattGTTTTGTAGGTTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33102568 41 + 33334924 aag--aacttttttcagagaa------atttgATCTTTTCGTAGGTTAG
i caeSp111.Scaffold629 C 0 I 418
s caePb3.Scfld02_0      2906990 39 -  4147112 att--acctttttttcagtaa--------ttgaTCTTTTTGTAGGTTGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    61553 153 +   152553 I

a score=-1477.000000
s ce10.chrX             2156860 15 + 17718866 GAGACACACG-AAACT
s cb4.chrX             13638965 14 - 21540570 ATGAAAGAct-gatc-
i cb4.chrX             C 0 I 56
s caeRem4.Crem_Contig0  4399804 15 +  4500979 GAGATAGACTAGATG-
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2907029 14 -  4147112 ACGATGAATA-AATC-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    61553 153 +   152553 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I

a score=573.000000
s ce10.chrX             2156875 2 + 17718866 AG
s caeRem4.Crem_Contig0  4399819 2 +  4500979 AG
i caeRem4.Crem_Contig0 C 0 I 369
s caePb3.Scfld02_0      2907043 2 -  4147112 AG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    61553 153 +   152553 I
e cb4.chrX             13638979 56 - 21540570 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I

a score=273.000000
s ce10.chrX             2156877 3 + 17718866 AAA
s caePb3.Scfld02_0      2907045 3 -  4147112 AAA
i caePb3.Scfld02_0     C 0 I 372
e caeJap4.Scaffold4951    61553 153 +   152553 I
e cb4.chrX             13638979 56 - 21540570 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=0.000000
s ce10.chrX             2156880 45 + 17718866 AATTTAATACTGAAATCACAATTCTAGAGAGCGTTGAAATGCACC
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e cb4.chrX             13638979 56 - 21540570 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=-1715.000000
s ce10.chrX             2156925 292 + 17718866 CGAAGGTTTTTTTTTGTTTAAAGTGGAGTTATGGAAGGAGCCAGAAAAATTTTAA-ATAATGTTTTGCGAGTTTCTAATTTTTAGTCAAATAGTTACAATTACTCATTTTTTGCCATATACTTTTCTGAGTACGGTTCTGGGTGTTTAGAACATACATATGTAGCCAAAATGtgctcaaataattttttttttccaaaacatatttatggctgttcaatttcttcaaaaaaaaacctacttttaac--taaaatctctaaatttggtagtttttcctttttgcaacagtctgaag
s cb4.chrX             13639035 188 - 21540570 tgaaGGCT--------TCCGAAATGAAGATATGCTAActaccgtgaacactctaatagaacgccctGCAATACTTGCACTTTTAGCTtgaatatctcaattcc---------------------------tatggt------------GACTAT-----------CAAAAttctgccaactgat-----------aaaatat---------tggtcatattatgataaataa--------tttaacaGTAAGGAC----ATTTTGGTAGC-----------------gtttgaag
i cb4.chrX             I 56 I 8
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=0.000000
s ce10.chrX             2157217 48 + 17718866 ttgattttttctaaataatcgtgctttatttttggtcatttatttact
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e cb4.chrX             13639223  8 - 21540570 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=919.000000
s ce10.chrX             2157265 232 + 17718866 attattcatttgattgaggtaag---tttaaaggt----gaacaaaaatgactgaaaatagtcaaagtaatacctgtcagct-tga----------------aaactgtc------taaattagagaaataacatgaggtaaacaattaaaa-------tatacaatTTAAAAAAATGT-------AAAAGTGACAAAACTGGAGGTttttggctaaaa---------gtaggtaaatttttaaggaaattttaaatcaccataaaaattgttttcaaacttttt
s cb4.chrX             13639231 260 - 21540570 ataattgatttCA-TGGTGCAAGACTTTTAAAAACTGCGAAACTaagaacacagaaaaaaact---gtgatttttgtCACCTGTGAGATCGCGGAAGActtcaaactatttttccgTATAATAAAGATAT----TGAGGTACAGAGTTAAGAACTGGCGGAcgttattgaaaaaaatgttttgaaaaaaatctactgagtt---gatttttagtgaaaatatCCCAACGCAAATAAATTCACGAG--------------CGTTCAAAAGTGTTTGCAAATGTTTT
i cb4.chrX             I 8 I 76
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=0.000000
s ce10.chrX             2157497 107 + 17718866 gagaagtttcatcacgaaatttgttacttgagcatattttgggtctatacattcaaaacacccagaaacgttattcctAAATTCACTTCTGATCTAGCACCCATCTG
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e cb4.chrX             13639491  76 - 21540570 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=-607.000000
s ce10.chrX             2157604 74 + 17718866 CATGAAATCATTTCTCAATAATTCTATTTAAATGTCCATTATTCATTC----AAGTTTTGTACCAGATAACAAATTGA
s cb4.chrX             13639567 61 - 21540570 CATGATGTCCTCACTAAGCACT------------TCCGTTGcgcgtttcaaaaaaagttgcagCTTCTAACA-----C
i cb4.chrX             I 76 I 2
e caePb3.Scfld02_0      2907048 372 -  4147112 I
e caeJap4.Scaffold4951    61553 153 +   152553 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I
e caeRem4.Crem_Contig0  4399821 369 +  4500979 I

a score=1903.000000
s ce10.chrX             2157678 17 + 17718866 TTTTTCTTATCACCATG
s cb4.chrX             13639630 17 - 21540570 TTTCTCTTCCCCACACA
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4400190 17 +  4500979 tttttcacacCTACATG
i caeRem4.Crem_Contig0 I 369 C 0
s caePb3.Scfld02_0      2907420 15 -  4147112 tttttcttaATGCCA--
i caePb3.Scfld02_0     I 372 C 0
e caeJap4.Scaffold4951    61553 153 +   152553 I
e caeSp111.Scaffold629 33102609 418 + 33334924 I

a score=41274.000000
s ce10.chrX             2157695 106 + 17718866 -----------GCCATCTTGGAACGCAACATTCTCGAA--AAAAAGTTATAGAGGCG--TGAGATCCACTT-AAGTT-TTTTTGCAATTCGATGTTCATCGTAC-AAACGCATTAATAGCAGCA
s cb4.chrX             13639647 108 - 21540570 CCGCTTAATGTCATATGTT---ACACAACGTTCTCGAACAAAAATATTATCG-GACG-ATGAGATCCACTT-ATGCG-TTT---AATTTCCATGTTCATTGTAC-AAACGCATTATGA-----A
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4400207 103 +  4500979 CCCATTAGT----CATGTT---ACACAACGTTCTCGAAC-AAAACATTATCG-GACG--TGAGATCCACTTAATGCG-TTT---AATTTCCATGTTCATTGTACAAAACGCATTATT------A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33103027  96 + 33334924 -----------GCCATTTT---ACACAACGTTCTCGAAC-AAATCATTATCG-GACGTTTATGATCCACTT-AAGCA-TTT---AATTTCCATGTTCATTGTAT-AAACGCATTATT------A
i caeSp111.Scaffold629 I 418 C 0
s caePb3.Scfld02_0      2907435  91 -  4147112 ---------------CATT---ACACAACGTTCTCGAAC-AAAACATTATCG-GACG--TGTCATCCACTT-ATGTGTTTT---AATTTCCATGTTCATTGTAC-AAACGCATTATT------A
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    61553 153 +   152553 I

a score=94483.000000
s ce10.chrX             2157801 343 + 17718866 GCTAAAACGTATGACCTCTTAAAGTTCTATCGGCCTTGAACACCTCTG---CCTGC-----AGC-AGT------------GCGTCAAGCGC---AACCG----CAG-CCG----------CTTTT-----GACGC--CCCAAG-AATTTCC--------A--GGAA---G--AAGGTGTGATTGTGTGTATT-------T--TTCGCATGCGTGTGTACCG---CGAAAAGATTG------------ACTATCATGCCGGCCCGTGATCAAGTAATGAGCG-------------TA---ATTC--GCTATCATAATACGACTGCTATCAAAACGTAC----------------ATAATCATTTAGCCTCC--GCGGAATTT---TCAAGGGAATG--CTTATGATGAC----------------GCTTATGATAAGACACCGACAAGAAAAGTGGGAGTGATCGTGTGAAGATAGTCG--------AATGAAAC
s cb4.chrX             13639755 371 - 21540570 GCTAAAACGTATGGTCTCTTAAAGTTCTATCGGCCTTGAACAC--CGG---CCGAT-----TGGTAGCTGCTGTCGCGATGAGAAAAATGC---AACTT----CAT-CGGGGCAGCAAGCCTTCTTCATCGCCGCTTCGCaag-aatttcctgaaaactA--CGAA---ATCGAAGTGTGATTA-----GTT-------TTCGGCATG------------------CGAAGGGTGTTCCTCGCCCTTAGTGTCA----TGTT---TTTCCAT-GGTTAGCG-------------TA---ATTTCAGCTATCATAACACGACTGATATCAAAG-ATGT----------------ACAATGATTTAGCCTTTTAGCGAGGTAT--------GGAATGCATATATGATGACGATC-------TGTCCTTTTTAAACAAGACGCCGACATCAGAAGCGTGAGCGAT-----GAGAAGAGGTG--------AAAGAAAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4400310 356 +  4500979 GCTAAAACGTATGATCTCTTAAAGTTCTATCGGCCTTGAACAC--CGG---CCCGC-----AGG-AAATGC-GTCGCATGGCGCAAGGCGC---AACTTCTGCCAT-CGG----------CTTCT-----GACGCCACACAag-aatttcctgaaaacta--cGAA---AT-GAAGTGTGATTG-----GTT-------T--GGCATGTAC------CTCCGC-ATTGAAGAATG------------ACTGTCA----TGCA---GCACGATAGATTAATG-------------TACGTAATCGGGCTATCATAACACGACTGTTATCAAAG-ATAT----------------ACAATCATTTAGCCTTT--GCGGAATTTTTCAT-TGGGAATG--TATATGATGACgatcgtttctttttcttctttagaCAGGGCGGTGA------AAGCGTGAGTGAT-----------ATGTG--------AAAGATTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33103123 370 + 33334924 GCTAAAACGTATGATCTCTTAAAGTTCTATTGGCCTTGAACAC--CGGCCACCCGC-----AGA-AGCAGCCGCAAAACGTCGCAATGCGC---AACTT----CATGCAG----------CTTTT-----GCCGTCGCACAAGAAATTTCCTGAAAACAG--TGAA---A--TAGGTGTGATTG-----GTTGAAGAAGA--GGCATGTGCGCGTGTACCCGA-TGTAGAGAATG------------GTTGTGA-GACAGCA---GATTAATTGATGAGCG-------------TA---ATTT--GCTATCATAACACGACTGTTATCAAAG-ATAT----------------ACAATCAGTTAGCTTGC--GCGGAATTTCCCCCCTGGGAATG--CCTATGATGACACTtgtttcgg-----ttttttgataaagcGTTAGCATTGAAAGTGTGAGTGAT-----------AGGTG--------AATGGAAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2907526 361 -  4147112 GCTAAAACGTATGATCTCTTAAAGTTCTATCGGCCTTGAACAC--CGG---CCTGC-----GCA-AGCCGCAG--AAACGTCGCAACGCGCAGAAAACT----TAGGCAG----------CTTTT-----GACGTCGCACAag-aatttcctgaaaacagaatgaatTGA--GAGGTGTGATTG-----GTT-------A--GACACATGTGCGTGTACCCGCTTGTGAAGAATG------------ACTGTCATGGCAGCC---GATTAATTGATGAGCG-------------TA---ATTT--GCTATCATAACACGACTGTTATCAAAG-ATAT----------------ACAATCATTTAGCCTCC--GCGGAATTT--CATATGGGAATG--CTTGTAATGACACCCGCC---------TTTTTTGATAAGGCGCCAGCATTGAAAGTGTGAGTGAT-----------AGGTG--------AAAGAAAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    61706 347 +   152553 GCTAATGCATATGATCTTTTAAATTCTAATCGACCTTGAACAC--CGA---CCACCATACTAGA-AGCTGC----------CGTGAGAAGC---AAACA----CAA-------------------------------TACAca-aatttcctgaaattgt--TGAA---A--TAGGTGTGATTG-----ATT-------T--GGCATGCCG-------------CCCGGCGATTG------------AC---------AGGC---GTTTAATTGATAACCGCTATCATAACCCACA---GTTT--CCTATCCTAACATGGTCggtttttgtt-tcgtttttcctCTTTTCATCACAGTAGCGTTGCGCGC--gcggaattt------tggaaaaa--tgctTGATGACGTTTACGTTTG-----CTTCTAAAGAGAATTGCTACAT--AAAGTGCGAGTGAT-----------AGGTGAGATAATTAAGGAAAC
i caeJap4.Scaffold4951 I 153 I 2332

a score=40887.000000
s ce10.chrX             2158144 324 + 17718866 AAGGTAATCTATTAAATCATGTTGGTTTCAAA-CCAAACTTCTCACTAAT----TATGGTTAA-AAATTCAAAAAATAGCTAACCTTGTTATCT----------CCTCAACGCTTCAAATCAAAC-TAGGTACATTATTAAATTCTTTGAAGCAAAATTTTGATCTCCGAACTAAT---GCGTCCATCCTTTCTCTTCTCAAGAAATAAACAA------TGTTGCGTAATTCTTCTCACTCTCATTCGAGAACCAGTCCTAC--------------TTCCGATGGTGAAAACGAAAG--------------------GATCATTCCAGGGCCAT---------GGAT-----------AC-------CGTGTTAGCAATCGAT-------GTGGAAATTGGAGTCAGAAGCGCGTACT
s cb4.chrX             13640126 315 - 21540570 GAAGAGATCCGC-----------GTTGATAAG-CTAAAG---------------AATACATAAATAACTTTGAA--CAGATGATCCCGTGATCGTGAACGAATCTTTTTGCC-TTCAATTTAT-----------TTAAG------------GTAAAATTTTGATCGACGAACCCAA---TTagtc--------------------agaaaaaataattctgtTGCGTAATTCATCTCACTCTCATTCGGGAACCAGTCTTTTCTTCATCGCTTTTCTTTTATTAgcggaaatgaaaaaagaaaattaaaaagggGTGGATGAAAGACTGACTGC---------AGAT-----------AC-------TGTATTAGGAATGGCTCATTGCGGTGGAAATCGAAATGGAATTCATAAATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4400666 344 +  4500979 Atagaaatttgt-----------atttttaaatctaaagTTTACTATAACATGAAATAACTAACCAATTATTAATTCTAATGATCTAATGATCTCAG-------TTTTTCCA-TTACAACCATAC-TAGACACATTAAGACATTT-----AGCAACATGTTGATCTCCGAACTAAT---AAAGTC------------ctcgaaaaataaacaatcaTCGTGTTGCGTAATTCATCTCACTCTCATTCGAGAACCAgtcttcat----tcatttttctttctatggcgaaaatgaaaataaaagcTTC----------GATGGATGGCAGACCAC---------GGAT-----------GCTTAGTAGTGTGTTAGGAATGGCTCATTGCGGTGGAAATCGAAATCATAACTGCATGTT
i caeRem4.Crem_Contig0 C 0 I 290
s caeSp111.Scaffold629 33103493 322 + 33334924 AACcgaatcatc----------ttttttgaaaactgcaGTTGATAGTTGC----TTTAACTAGGGATTTGTATC------AGATTCAACTTTCA----------TCTTTACA-CTGAAACTACAT-GACGCATATACAAGAATG-------GAAACATGTTGATCTCCGAACTAAT---GAAGTC------------CTCGAGATGTAAACAATAATAGTGTTGCGTAATTCATCTCACTCTCATTCGAGAACCagtcttct-----tcatttcgcTTCcgacgaagaaaatgaaaatgaaagcttG----------GATGGATGGCAGACCAC---------GGAT-----------AC-------TATGTTAGGAATGGCTCATTGCGCTGGAAATCGAAATTGGATAGACTTGTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2907887 304 -  4147112 AAggaaattatc-------------tgaaaaaactacTTCTGAGAAGAAC----GTT--CTA--GAATTGT---------------------------------TCCTAACA-ACCACACTACATAGACTCATATCCAA-------------AAACATATTGATCTCCGAACTAATGAAGAAGTC------------CTCGAGAAATAAACAATAATAGTGTTGCGTAATTCATCTCACTTTTGTTCGGGAACcagtcttct-----tcatttttctttcgatgccgaaaatgaaaataaaagcaTA----------TA-GAATGGCAAAAAACCCTTCTTAGGGATACAACTACTACAC-------TATGTTAGGAATGGCTCATTGCGGAGGAAATCGAAATCGG-----------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    62053 2332 +   152553 I

a score=-9658.000000
s ce10.chrX             2158468 110 + 17718866 AATATCTTTTTCCAGT---CCCGTTTTCTAGACG-----AAGTGATGTGGAAAAT--TGAACAAAGTG----------------CGGCTACCGTTGATTACTTCGGTTTTTTAATGAATAAAGAAGGTTATTAAAA
s cb4.chrX             13640441 114 - 21540570 -------AATTCAATTGTTTCGGTATAGTGAGTGTTCGCAATGGAATTTGCGGAA--tggaaaaacgaggaaaagaggttactgtagatactGAA-----CTTATGATACttgaaaaatgacctgaat--------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33103815  96 + 33334924 --TCACCTTTCACATTCCACCTGTTTTCTTGATG-----AACTGACttagaagga----gaaaaataa----------------tagcTACAGTc-----ctt--------tttaaaacaaaaggGAATATAAAAA
i caeSp111.Scaffold629 C 0 I 71
s caePb3.Scfld02_0      2908191  99 -  4147112 --TTGCTACTCTGATT---CCCGTATAGTTTATG-----TGGTGATGTGAAAGAAACTGGACAAATG---------------------TATTGTT-----TTCATGGTAGATGGAAAATAATGGAAACAATAAAG-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-26250.000000
s ce10.chrX             2158578 269 + 17718866  
s cb4.chrX             13640555 485 - 21540570  
i cb4.chrX             C 0 I 143
s caePb3.Scfld02_0      2908290 125 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e caeSp111.Scaffold629 33103911  71 + 33334924 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-2112.000000
s ce10.chrX             2158847 107 + 17718866 ccccgttaatacatagacatttaaagaagtactgtaattttcgctacaagatattttttattagcgaaatacgcatttttgaaatttcgtctccaccgtaataACCA
s caePb3.Scfld02_0      2908415  24 -  4147112 -------------------TTCAAGCAAAT-----------------------------------------------------------TCTCCATC-----AATGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e cb4.chrX             13641040 143 - 21540570 I
e caeSp111.Scaffold629 33103911  71 + 33334924 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-2107.000000
s ce10.chrX             2158954 38 + 17718866 TAAAATATAAACATT---------CGCAACAATAATGAA---AATGCAAT--
s cb4.chrX             13641183 52 - 21540570 CAGGATATAAACGTAacaacaatttcagaaaatcctcgacagaaaataatat
i cb4.chrX             I 143 C 0
s caePb3.Scfld02_0      2908439 30 -  4147112 --------TTACGTA---------TAGGATAGTACTAGA---AACGTGGT--
i caePb3.Scfld02_0     C 0 I 114
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e caeSp111.Scaffold629 33103911 71 + 33334924 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-408.000000
s ce10.chrX             2158992 58 + 17718866 TT-----------------------CACCTTAA-AAAAAATGAGATCGTGTGATTGGGAATATATAT-ATATAAATAGTAAAC
s cb4.chrX             13641235 83 - 21540570 ttgaaaattgatttttgcaaGTGTACAGCTTAACGAAAAATGCCAACATGagaatcgaattttttttcaaaaaaatgttagaa
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2908469 114 -  4147112 I
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e caeSp111.Scaffold629 33103911 71 + 33334924 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-2971.000000
s ce10.chrX             2159050 53 + 17718866 -------------------AAGCATTAAAAAAATTATCACCAAAAATCAAGAAAATC-TGTAACTATTGGAAC
s cb4.chrX             13641318 67 - 21540570 aattgTGGTCTTCCCTTGTAAACTAC--ACAATCTGTAATCGAAAATCGATTGAATT-CACATCTCC---AAC
i cb4.chrX             C 0 I 2
s caeSp111.Scaffold629 33103982 44 + 33334924 -------------------aagcttT-AACAAGATAAAACTACAGATAATGTAAGTTCCAAATC---------
i caeSp111.Scaffold629 I 71 C 0
e caePb3.Scfld02_0      2908469 114 -  4147112 I
e caeJap4.Scaffold4951    62053 2332 +   152553 I
e caeRem4.Crem_Contig0  4401010 290 +  4500979 I

a score=-1060.000000
s ce10.chrX             2159103 24 + 17718866 -ATTTTCCCCATTCTCCCCTTCGC-G
s cb4.chrX             13641387 23 - 21540570 -ATTCCCTACCATCtcctctttat--
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4401300 22 +  4500979 -ATTCTTT-CCATCTCTCTTCTCG--
i caeRem4.Crem_Contig0 I 290 C 0
s caeSp111.Scaffold629 33104026 25 + 33334924 ACTCCCCTCACACTTCCcatttact-
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2908469 114 -  4147112 I
e caeJap4.Scaffold4951    62053 2332 +   152553 I

a score=3890.000000
s ce10.chrX             2159127 24 + 17718866 TTTTTTTTTACTAAAGTCCCC-CTA
s cb4.chrX             13641410 24 - 21540570 tttttcttttctagaaaattt-caa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4401322 24 +  4500979 CTTTTTTCTACAAGTTTCCct-tta
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33104051 16 + 33334924 tttttccctAGTA---------CTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2908583 25 -  4147112 tttttttctattagaatcccttcaa
i caePb3.Scfld02_0     I 114 C 0
e caeJap4.Scaffold4951    62053 2332 +   152553 I

a score=61361.000000
s ce10.chrX             2159151 100 + 17718866 AACAAGTGAAGCT---GATGTTGCCGAAAAGCGAGGATAAC-AACCA-ATAATTAGCCTAATTT------GGAGAAGTGAGATTTGTGGTG-AATGTAATGA-ATGTGAATCA
s cb4.chrX             13641434 103 - 21540570 aaaaagggaagCCGATGATGTTGCCGAAAAGCGAGGATAAC-AACCA-ATAATTAACCTAATTC------AATGCAGTCAGATTTCTAGTG-AATGTAATGA-ATGTGAatca
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4401346 102 +  4500979 aaaaagtgaagtC---GATGTTGCctaaaagagaaaatggc-AGCTATATAATTAACCTAATTT------AATGAAGTGCGATTTGTTGTG-ATTGTGATGAGATGTGAATCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33104067  95 + 33334924 AAAAAGTGAAGCC---GATGT-TGCGGAAAGTGAGGATAACAAACCA-ATAATTTGCCTAATTT------AGTGAGAT-----TTGTGATG-ATTGTAATGA-ATgtgaatca
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2908608  90 -  4147112 aaaaagtgaagcc---GATGTCTCCGAAAAGCGAGGATAAC-AACTA-ATAATTAACCTAGTTT------GGTGAAGT----------GTG-AATGTAACAA-ATGTGAATCA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    64385 109 +   152553 aaaaagtgaaaaggaaGATGT-TAAAGAAAGCAAGGATAAC-AACCG-ATAGTTAGCATAATTTGTTGGAAGAGAAGAAAGATTAGTTAGGCGATATAATTA-ACATGATTCA
i caeJap4.Scaffold4951 I 2332 I 451

a score=-2673.000000
s ce10.chrX             2159251 4 + 17718866 TCAT-
s cb4.chrX             13641537 4 - 21540570 tcgt-
i cb4.chrX             C 0 I 420
s caeRem4.Crem_Contig0  4401448 4 +  4500979 TCTA-
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33104162 5 + 33334924 ttttt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2908698 1 -  4147112 T----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I

a score=263.000000
s ce10.chrX             2159255 22 + 17718866 CCAAATACAATTTTGTCCCTTT--
s caeRem4.Crem_Contig0  4401453 24 +  4500979 CCAcacactcaatttttttgttaa
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33104167 22 + 33334924 ccatatacagcggtttcttttt--
i caeSp111.Scaffold629 C 0 I 351
s caePb3.Scfld02_0      2908699 19 -  4147112 ---CATAAATTATTTCCGTCTT--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I

a score=1634.000000
s ce10.chrX             2159277 23 + 17718866 ---ACAGTAAGCAGTTAGTTTAAATG
s caeRem4.Crem_Contig0  4401477 21 +  4500979 ---atag--AATAGTTAGTAAAATTG
i caeRem4.Crem_Contig0 C 0 I 351
s caePb3.Scfld02_0      2908718 26 -  4147112 AAAATAAGTGACAGTTAGTTGGAATG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I
e caeSp111.Scaffold629 33104189 351 + 33334924 I

a score=91.000000
s ce10.chrX             2159300 1 + 17718866 A
s caePb3.Scfld02_0      2908744 1 -  4147112 A
i caePb3.Scfld02_0     C 0 I 290
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I
e caeSp111.Scaffold629 33104189 351 + 33334924 I
e caeRem4.Crem_Contig0  4401498 351 +  4500979 I

a score=0.000000
s ce10.chrX             2159301 850 + 17718866  
e caePb3.Scfld02_0      2908745 290 -  4147112 I
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I
e caeSp111.Scaffold629 33104189 351 + 33334924 I
e caeRem4.Crem_Contig0  4401498 351 +  4500979 I

a score=629.000000
s ce10.chrX             2160151 48 + 17718866 AATGTGATTCAGGAAAAAATAAAAT-TCATCCACAGTGAC--GATACGTAA
s caePb3.Scfld02_0      2909035 51 -  4147112 AATGGTGTTCAGGAAAAtgtatattctgaaaaacagtaatCAGAGAAATAA
i caePb3.Scfld02_0     I 290 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I
e caeSp111.Scaffold629 33104189 351 + 33334924 I
e caeRem4.Crem_Contig0  4401498 351 +  4500979 I

a score=189.000000
s ce10.chrX             2160199  8 + 17718866 ---TGTTTGAG
s caeSp111.Scaffold629 33104540  8 + 33334924 ---TGCATGGA
i caeSp111.Scaffold629 I 351 C 0
s caePb3.Scfld02_0      2909086 11 -  4147112 AACTGGAGGAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I
e caeRem4.Crem_Contig0  4401498 351 +  4500979 I

a score=2860.000000
s ce10.chrX             2160207 59 + 17718866 ACCAGGCGGAATA---AATAACATAACTAAAGCTTAAAGAGAAATCATTTGGATAATTGATT
s caeRem4.Crem_Contig0  4401849 51 +  4500979 ACCATGCGGAATA--CAAGGC-------AAAGTTCTAGGAAAAGCGTTTGATATGACAGA--
i caeRem4.Crem_Contig0 I 351 C 0
s caeSp111.Scaffold629 33104548 44 + 33334924 GTCAGGCTGAATA---AAGGA-------AAAGTTCTGAGAGAAGAATGTGATAA--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2909097 53 -  4147112 ATCAGGCGGAATATATATTAG-------AAAGTTTTAAGAGACACGCCTGATAAGTATAA--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I
e cb4.chrX             13641541 420 - 21540570 I

a score=-130.000000
s ce10.chrX             2160266 2 + 17718866 AA
s cb4.chrX             13641961 2 - 21540570 AG
i cb4.chrX             I 420 C 0
s caeRem4.Crem_Contig0  4401900 1 +  4500979 -A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33104592 1 + 33334924 -G
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2909150 2 -  4147112 TG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    64494 451 +   152553 I

a score=68095.000000
s ce10.chrX             2160268 146 + 17718866 AATAAACTGGATGTGAAATTG-ATATGG---------TCACAACACATAACT----ACTTACAATACCATATAAACAGAATAACATAACAGAACATAAAAA---------AAGA------AGATTACGACGATCACTG---GAA-------GCTGGTAGTGTTGTCGG--TGGTTGGAAAAGGAG----------AA
s cb4.chrX             13641963 178 - 21540570 AATAAACAGGATGTAAAACAGCAAATG------------ACCATACAAAACCAAAAGCGTACCATATCATCAGAACAGAATAACATCACAGAATATAAAAAACTGCGATTTAGG-AGGGAGGATAATGACGAACACTG---AAAAGCTAATAGTAGCAGTAGTTTTAGC---ActgagaaaaagggaaaaacgaCAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4401901 151 +  4500979 AATAAACAGGATGTGAAAAAG-ATATGG---------TCACAACACATAACT----GCGTACCATACCATCAAAACAGAATAACATAACAAAACATAAAAAGCCAGG---CAAA-AACAGAGATAATGACGAACACTG---AAA-------GCTAGTAGTAATTTTGG------TGTGAAAGA------------AA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33104593 157 + 33334924 ACTAAACAGGATATCAAATGG-ATAAAA---------TGACAAAACATAACT----GCGAACCATACCGTCAAAACAGAATAACATAAcaaatcataaaaaagagga---aagaggggggggATAACGACGATCACTG---AAA-------GCTAGTAGTAGTTTTGGCCCTgttgagaaaag-------------a
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2909152 155 -  4147112 AATGAACAGGATATCAGGCAG-ATATAG---------TGACAAAAGATAACT----GCTTACCATACCATGAAAACAGAATAACATAACAAAACATtaaaaagagga---gaga-----gggATTACGACGATCACAG---AAA-------GCTGTTAGTAGTTTTGTCCTTGttgagaaaagtg----------aa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    64945 156 +   152553 AAAAAACAGGATGTCAATAAG-ACATGGAGACCAGCAACACCATACATAACT----GCATACCATACCATCAAAACAGAATAACACAACTGAATATGAAAA---------CAAG------AGATTACGTCGCAGACTAGTTAAA-------GCTGGAAGTAGTCTGcatttgcatagggaaaa--------------
i caeJap4.Scaffold4951 I 451 I 1463

a score=54233.000000
s ce10.chrX             2160414 223 + 17718866 GCAGAAGCCGAAGCCTCGTGGC--------GTCTGT--------TGCCCACAGATCGGCTTATG---------ATTGCTTATGAGATA-------TCGGGCTGATATTGTGGGATTGTGGACATTTCG------------------------------AGAAGAGGATGAATCGAAACTTGAAACCA-TTTCACATTATTTGTTATCAATGGGAATCATTCCGGCATTTCGCTTTC-GGT--TTGCAATCTGATGACGGTTTGGAGAAACATATAAGTTCCGGGAGGGA---------------------
s cb4.chrX             13642141 293 - 21540570 G--AAGACAGAAGACTCGTGTCTGGGGTTGGTTGGTGTTGTGTGGGGCCACTGATTGGCTTTTGATGGATTTAATTGGTTATGAGATCAATATATCGGGCCTTATATTGTGGGATTGTGGACATTTCGCAGTGAGAGTGTGAGtggagaagagagagaaaacgagGATGAATTAAAACTTGAAACCATTTTCCCATTATTTATTATCAATGGGAA----ATC-TTATTTCGATAGT-AGCGGGCGCAATCAG--GAAGCGT--G----TTGTTGTGATTCCGGGATGAGGTGTTGGAAGTG-AGATgagg
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4402052 162 +  4500979 G--GACGCTGAAGACTCGTGGC--------GTTGGT--------AGGCCAC---------------------------------------------------------------------------------------------------------------------------AAATTTGAAACCA-TTTCACATTATTTGTTATCAATGAGAATGATTTC-GCATTTCACTTTC-TGC--TTCCAATCAGGTGAAGAtt--gaaaaacacaacaatTCCGGGATCAGAAGATAGAAGGATTGATGGGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33104750 231 + 33334924 g--gaagcaGAAGACTCATGGC--------GTTGGT--------AGGCCACAGATTGGCTTTTGATGTATTTAATTGGTTATGAGATA-------TCGGTCTTATTATGTGGGATTGTGGACATTTCG------------------------------AGAGGAAGATGCATCGAAACTTGAAACCA-TTTCACATTATTTGTTATCAATGGGAATGATTTC-GCATTTCGCTTTC-TGC--TTTCAATTAGATGGCGGTA--GGAGg-----ggaattcaataaatg----tTAAGGGGG-A-------
i caeSp111.Scaffold629 C 0 I 444
s caePb3.Scfld02_0      2909307 241 -  4147112 g--gaaGCAGAAGACTCATGGC--------GTTGGT--------AGGCCACAGATTGGCTTCTGATGTATTTAATTGGTTATGAGATA-------TCGGGCTTATATTGTGGGATTGTGGACATTTCG------------------------------AGAGATAGATGCTTCGAAACTTGAAACCA-TTTCACATTATTTGTTATCAATGGGAATGATTTC-GCATTTCGCTTTCTTTC--TTCCAATCAGATGACGTTG--AAGAAACATCGAAATCCGGGAAGTTCACCTGGAAAGTG-A-------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I

a score=-6546.000000
s ce10.chrX             2160637 45 + 17718866 AGAGATCTAAATTCaaatattat------aaaaattattatgt--atatttCA-----------
s cb4.chrX             13642434 39 - 21540570 ---------------gattttct------gaaaatcggaaaaactAGCTTGAATTGCGCG----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4402214 43 +  4500979 ---------------AGTTTTCTAAAGTAAAAGGTTGAAAGAA--AGATTGCATTCTTCA----
i caeRem4.Crem_Contig0 C 0 I 1430
s caePb3.Scfld02_0      2909548 58 -  4147112 ATGGAATTGAATGTTACTTTTAC------GGAACTCAACATGTAAACGCTGAATAGGGGATATA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I

a score=-1396.000000
s ce10.chrX             2160682 48 + 17718866 -------TCAAAAGTTTCAACAATTTATAAAC----GTTAAAGGCAAAAATGAAATTTG-
s cb4.chrX             13642473 59 - 21540570 TAAAGCTTCTACTCGGCTGTCGACTTGTAACTTCTGGTCAGAAGTACCAGAAGGATTTG-
i cb4.chrX             C 0 I 107
s caePb3.Scfld02_0      2909606 48 -  4147112 -------TGAAATGAATTGTTGAATTTTAATT----ATCAGAGAT-TAACAAGGATTTTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-450.000000
s ce10.chrX             2160730 105 + 17718866 TAAAAATTAAAGTGATGATGTAAAAAATTATGTACATTTGCAAGAAATCAAATATT------AAACATGCTTG-TTTGTTTTAAATTGCTGGGTTTTCAA-----TTGACCTTA-TGT
s caePb3.Scfld02_0      2909654 109 -  4147112 TGCTG--TGCATTGTTGATGTCACAAGTCTTG----TTTCCGTGGACTCAAAAATTCCGCAAAAACATTATCGAATGGGTACAAATTTTT---CTTACAAGCACTTTGGCCATAGTGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13642532 107 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-4635.000000
s ce10.chrX             2160835  91 + 17718866 TTTCAGGAAGGTTTTTGAATTCATCAAT-----TTTCCAA------AATACGTATCCTCCAGAA-----TCTTTta-------ttagttttgcaaccttacggacgaatcgaaa-----------------
s cb4.chrX             13642639  93 - 21540570 --TTTCGAACGTtgataaattcataaatttgtattttcaa-attaaaaggAAAATTT----AAT-----TGTTTCA--------TATTTAAA-AGCTTCGCAGATATCCCGAAA-----------------
i cb4.chrX             I 107 I 62
s caePb3.Scfld02_0      2909763 122 -  4147112 --CATACATCTCTTGTAAGCT-ATTCATTAGGCTTTCCAATATcataagaaacatttttcaaatcattctaTTTCGGAATATTCTAGTTATG-AAATTCA-----ATACTGAAAACTCGTGCCGATCAATG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=480.000000
s ce10.chrX             2160926 20 + 17718866 attag--ccattcaatttATTT
s caePb3.Scfld02_0      2909885 22 -  4147112 ATTGACTCCATCCAGGATATTT
i caePb3.Scfld02_0     C 0 I 167
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13642732 62 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=0.000000
s ce10.chrX             2160946 61 + 17718866 TTTTTTTTGTGACCTACATTCTTCCCGCTTGTGCTGTGGTCCTCTTGTATTCACCGCTCCT
e caePb3.Scfld02_0      2909907 167 -  4147112 I
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13642732 62 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-415.000000
s ce10.chrX             2161007 113 + 17718866 CATATTATTTTCACTAATAAATTATC-------------TTATTAtttacaattatgagggcacaacatttagttctgcaacctctg--atagtcttgcactga-atgtctgccatacctgagaaacgt
s cb4.chrX             13642794 110 - 21540570 CAAAAAGTCCCGACTAAGAAGTCACCAGATGTCCTGGaatcgttttttaaaattcaaattagcCAAATTCTATTACtgtaaaccctgtaatagaattgCCTTCAGATGTC-------------------
i cb4.chrX             I 62 C 0
e caePb3.Scfld02_0      2909907 167 -  4147112 I
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-3384.000000
s ce10.chrX             2161120  90 + 17718866 tgccgaaacttcagcaaatttgtcat-tatttgggtgaatttaacttgaagcgttca--------atttattg--actatatc---aaa----------ttaagt--------ttttttcat
s cb4.chrX             13642904 117 - 21540570 -----AAGTGCGAGCtaatttattttggttttcgtgaaagatactaaaaaatgttcaaatgatagattatttatcataatatcaccaaaatgcTATCAGTTaaaattattgatatctttcac
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2910074  85 -  4147112 --------TGccag--aatttctttt-tttttcttggagtCCTTCATGGGTTGtc------gtatattttttg--aagata-----aaaaagtt-----ttaaga--------ATGTTTCAT
i caePb3.Scfld02_0     I 167 I 116
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-853.000000
s ce10.chrX             2161210 81 + 17718866 aaaatt---ggtagctt---ttcaaatttatagtgtagttg-----------aaagaatagctttgcagcctctattagactcgcacccctacggatc
s cb4.chrX             13643021 91 - 21540570 agaaatcgagataattcagcttgAAGTTAACGGTTCGGGTGGGCTTATTGGTAGATAACAATTAATTAGATCCTAAAAAACCCGAGCCACT-------
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2910159 116 -  4147112 I
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-6156.000000
s ce10.chrX             2161291 135 + 17718866 aatcagatatttgtcttgca-------------tgcaaaa---ctaatagagAGTTTTGTTTTCGAA---TTAACAG----TTCCCAAACTCAA-------------TTTTTCTAGC--AAATC----CCACTCATCCCTTTGTATCGTTAACTTTTTTCCCAGC-CTATCTATTCCA
s cb4.chrX             13643112 109 - 21540570 ------CATTTGTTCCAAAA--ATGTTGTCTCCTTTCGaa---ctaatat---------tttttgaaacttcaagaG-------TCAAACACCACAT----------CTCCTCAAac-----------cctctcctttttttgca---------------------GTAGGGATTCCA
i cb4.chrX             C 0 I 206
s caePb3.Scfld02_0      2910275 173 -  4147112 AACCTGACCTTATTCCTGTATTATGTAAActgtttgagaatttttaatATGGTTCATCAGTTGTAAAATTTCCACGGGACATATCCAAACCCGAAGTTGTAATCTGactttccaaaataaaatttaggCTCATCGACTTTTTGGATT-----CTGTTTTCCGAATTGTAAGAATTCCC
i caePb3.Scfld02_0     I 116 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=255.000000
s ce10.chrX             2161426 18 + 17718866 ATTATCATCTGTTGCTTA
s caePb3.Scfld02_0      2910448 16 -  4147112 AT--TCATGCCTTTCTTA
i caePb3.Scfld02_0     C 0 I 104
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13643221 206 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=0.000000
s ce10.chrX             2161444 91 + 17718866 TTACTTCTGCACTTTCAGATCACAAAACTAATGCAGAATAATAAACAAAGATCCTGAGATTATACTGATCAGAAAACAGGATAATAATTTC
e caePb3.Scfld02_0      2910464 104 -  4147112 I
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13643221 206 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-314.000000
s ce10.chrX             2161535 126 + 17718866 ACTTTCAAGTTGACTGGTCTACCTAGAAGCT---CAAAAATCACTCTGGAAACTAATTTTATCCAAATTG--AAATATACTTTTTCATTAATTATTTATCAAGTTCGTATCAAATAT-TACATTAAAAGTCG
s caePb3.Scfld02_0      2910568 103 -  4147112 ACTTTCACATT--------TCTTCAGAAGCTTTCTCAGAAACATTCGG--------TCTTCTAAAAATAGGTGAGTATA-------GTTGATAATTTA------TTGCAGCACATATATTCACTGAAATATT
i caePb3.Scfld02_0     I 104 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13643221 206 - 21540570 I
e caeSp111.Scaffold629 33104981 444 + 33334924 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=302.000000
s ce10.chrX             2161661 2 + 17718866 TG
s caeSp111.Scaffold629 33105425 2 + 33334924 ta
i caeSp111.Scaffold629 I 444 C 0
s caePb3.Scfld02_0      2910671 2 -  4147112 TA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13643221 206 - 21540570 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=-1604.000000
s ce10.chrX             2161663 25 + 17718866 -----------------TTCCTTGTAATTCTTTTTTTTCCAG
s cb4.chrX             13643427 20 - 21540570 -----------------CTCCTCCTAATTCTTCCTTT-----
i cb4.chrX             I 206 C 0
s caeSp111.Scaffold629 33105427 32 + 33334924 tttctttgaataatTCATTCCCTCGACTCCTG----------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2910673 16 -  4147112 T----------------TCCCCTTGACTTCTG----------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeRem4.Crem_Contig0  4402257 1430 +  4500979 I

a score=27945.000000
s ce10.chrX             2161688 315 + 17718866 AAGCTGCAATTTCTTGAAGAC----AACTAAGCGGAAATTAACCACTGGCACGTCAT-ACAGGCCGTTGCTCAAGT--ACACAATG-------TTATAATTAACTTCGTTTGACTCAT-TTGGCATTCAAGACAGCATACT----ATATGCATTTTCTG--ACGACTAGCTCATCA-GCTCTTCAAAATTCTACTGGCCAAA----------------CTTC-------GTGTCATTCTTG--TCTGGCAAAATCTACA--TTTTTTAATCAA-AAAGTAAA---T------GA------------------------AATCGGATGAAAACATTATACGGATGCTTCCCTGTCTAACATTTCCAACCCT--AAATTGAAAATTGGAACCATTCACATTT
s cb4.chrX             13643447 289 - 21540570 --CTTCAAGTTTctcggaa------a-----acaaaaattaacaaGTTGCACGTCAT-ACGGACCATTGCTCAAGTACACACAGTGACATGTCTCATAATTAACTTCGTTTGACTCAT-TTGACATTCAG-----CTTacg----aaa---aatgctaa--aaaattttctcatt--ttt-----agattctgcTAATCAATAGTT-TTTGGTG----TTTTCCTTGTTGGGACATCTTTGACTTTT--------------GTTTATAATCAA-AGACGCGTCTCT------TT------------------------GATTAaatga------------aattcca---------gaacttccgTCCtccaaaatgagaaat----ttggttccatttt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4403687 323 +  4500979 AAACTTAACTTTCTTGGAA------AGAAACACGGAAATTAGCAGTTTACACGTCAC-TTGGATCATTGATCAAGT--ACACAATGACATGCTTCATAATTAACTTCGTTTGACTCAG-TTGACATTCAA-----CAtaca----aac---aattattt--ttatcttACTCATCAAGAT-----AGATTTTGCCAATCAGTCGCTGTTTGgct----tttt--------ggttatttttg--tttt--------------attctcaTTCAAGAAACGCATCCCT------TTTTTAATCAAAGCTAGATGCATTCAgattaaatgagaaatttgaatgaatcCCA------CGGATACTTCCGGCACC--AAATGAAAA------TTCCTTCAGATTT
i caeRem4.Crem_Contig0 I 1430 I 885
s caeSp111.Scaffold629 33105459 300 + 33334924 -------AGTTTATTAGAAGC----GAATAGGCGGAAATTAGCAACTTGCACGTCAT-ACAGACCATTGCTCAAGTACACACAACTACATCTTCCATAATTAACTTCGTTTGACTCATTTTGACATTCAA-----CATGCTCAACGCA---ATTTTTTGCGGTGACTAACTCATTAATTTCTACAAAACTCCGTcaatc----------ttgtt----tttc-------aatctcttcttt--ttctggaaaacacATAAAATCTTTAATGAA-AGAATCAACCTT------TT------------------------ggtttaatgaaaaa--------taca----------gaGCATCTCGTGAATG--AGATTGAAA------ACCATCGTGATTC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2910689 314 -  4147112 -AACTACAACTTCTCAGAAGTTGTAAAAAACGCGGAAATTAGTAAGTTGCACGTCATAAAAGACCATTGCTCAAGT--ACACAATGACTTGCTTCACAATTAGCTTCGTTTGTTTTAGTTTGACATTCAA-----GATGCT----GCA---AGT-------ATGACTAACTCATTATTTTCTCCGAAATTCTGCCAATCAAtctctgttttgttttcgtttg-------AAGCTATTTACG--TTTTTGCAAAT-CCCAAGGTCTTTAAT--------CTAACCCTTGACAATC------------------------gctttaatgaaaaa--------aataaga------cgGGTGTTTCCTCAATG--AAATCGGAA------CCTATTCAGAATC
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951    65101 1463 +   152553 I

a score=-31747.000000
s ce10.chrX             2162003 205 + 17718866 GCGTCGTTTTTCTCTTAATTCCG-AATAGTCATCTAACTATAGTCGGACGAGTCATCTATAGAACTTCACTCATTAAGTGTTCCACTTCGTCTCATTTGGACATTATT------------------------TTTATTT------TTTT-----GAATTTC-GAAGCTAATGTTTTTCTCTAATAAAAAATGATGTTTGAAAATGGATAAT--------GAATGT---TCGCGGCATTTTA----ATA----CTAATATAC---------
s cb4.chrX             13643736 170 - 21540570 ------atgtgttt----tttca---tTGTCATTTGATTC----ttaaaatccttt---------tttcttgaatcatTGCGCCAGTTTGACCGATTCAAA-ATTACT------------------------TTTCCTCTGAATGCCATTCTCAGAGCTTC-AATCTGAACGATTTACGGTA-------------------------AACT--------TCC------TTATGGATTTCGGGACTATAAAAACTAATATTC---------
i cb4.chrX             C 0 I 29
s caeSp111.Scaffold629 33105759 182 + 33334924 -TGATGCAGATTTTTGG-TTCCGAACATGTCATTCGAGTTGA--TTTACGGTTCGT---------TTcctgaaatgaatg----atttttctt---------aCTATA-------AAAGGA-GTACtggtatttttttc----tgacat-----ATGTTCCTAACTTATTTGGTTTct-----------------------------tcct--------tccttt---tctttgttttgca----atagttttgagttttcgtGAGATA-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2911004 231 -  4147112 TCGTTGAAAAGTTCAAGCTTCCG--CTTATCACTCACTCAAA--TAAACGAACAAt---------ttcctgatttcaatg----gttttgATGGGTATAAA-ACCATATATGTTTACAGGATGTATCAACGGTCTCGTC-----ATCAT-----AAGTTTC-ACTTCAATTAATTTATGATATTCAGAGATG----------ATAGATCCTATTGAAGGTCCTCTGACTCATTTTTGTGTAGAGGATATTTGCAGAGTTTCATGAGAAAC
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeRem4.Crem_Contig0  4404010 885 +  4500979 I

a score=-2697.000000
s ce10.chrX             2162208 33 + 17718866 AGTACAGTATT---------------------------------GTAATTTCAAAGAGGGTCTTAT
s caeSp111.Scaffold629 33105941 29 + 33334924 --TGCACTTTT----------------------------CGATAGCTgct-------gatttcttt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2911235 57 -  4147112 --TGCATTCTCATCTATCTTTGTTGCAGCTCAAATTCAGCGTTAGTAATT-------GAATCATCC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e cb4.chrX             13643906 29 - 21540570 I
e caeRem4.Crem_Contig0  4404010 885 +  4500979 I

a score=-15718.000000
s ce10.chrX             2162241 222 + 17718866 AGATTTTTGATGTTTTGG---TTTAGaaaataat---atttataaaatttCCATTTCAAAACTT-TACAGAAAAGGTGAGGATTTACCAAAAAAAACCATAAGCACATACACTTTTTAGTCAAGT--------ATTT------TTCATAGGT-----GGTCACTT---TATAATTT------------------TCATCCGTTTTTTTCTCCTTTCATTTCAATTATGTAACCTAAAATTTGGAAGTCGATTTTCATAGGTTTCCCATT
s cb4.chrX             13643935 179 - 21540570 aattctcTTGTGTTTTGGCACTTCAC-----------TTATAAGAATTT----------------TGATAGATGGCTTCCAATTC-------------TTGATCCC---TGCCCTTTA---AAGTCATCGTAAATTC------TGTTAAGAA-----AAATATTACCCTAGAAATT-------------CAGACTCATAtgttttctcaatattt--ttttgct------------aGTCT-----CCGGCTCCCATGAGTTTTCCTT-
i cb4.chrX             I 29 C 0
s caeSp111.Scaffold629 33105970 219 + 33334924 ---tcttctgtactttatgtattcaaaaaaattt---ttttaagaaattgaatttccaaGAATTGTAATGAAAGGTTTCTAATTT-------------ATGATCAG---CGTACTTTAACGAAGCTAT-----ATTTG-----CTCTTGGAATGTATAGATTATA---TATGATTTAGtagttag----aaaaattattttctgtttccccAGTT--TTCCATT----CAGCCAAAGGTTG-----GTGAATGGAATAACTTTCCCATT
i caeSp111.Scaffold629 C 0 I 32
s caePb3.Scfld02_0      2911292 225 -  4147112 ---TAATTCtcattgtgaattttttggaagtgcTGGATTttaagaaattgattttttggaaaat-tatttaaaGGCTTcccattt-------------ctgatt-------tttttttctgaagctaT-----ATTCGGCAGTTTTTAAGAATTGTGGGATTTGA---TAGAATTTCTCAGCAAGTTCCATCCCTTACTCATTGTTCCACAAATT--CTTTAGT----CGAGAGAAAGTCG---ACGTGAC---AAAAACTTTCCCATT
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeRem4.Crem_Contig0  4404010 885 +  4500979 I

a score=-2827.000000
s ce10.chrX             2162463 47 + 17718866 TAACTATTTACAATCCCATAATACACGAATTTCTTAAAATTTGATGA
s cb4.chrX             13644114 28 - 21540570 ----------CAACGGCTTAAGGTCAGaa------taaaattga---
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2911518 32 -  4147112 ---------TGAGCTTTCTCATACATTAA------AAAactccatct
i caePb3.Scfld02_0     I 1 I 4
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33106189 32 + 33334924 I
e caeRem4.Crem_Contig0  4404010 885 +  4500979 I

a score=-26635.000000
s ce10.chrX             2162510 201 + 17718866 --TTTTTTTTAAA--ACAGAAAAA--TGGCTTTTGATGTTCGG-TCAGTGCAC-TTTTT-----------CTTCAAAAATAACATTTGAATAAAAATTTCCTCTTAATGA--CTGTCAACTTTCATAATAATTTATTG---GGAGCTGTAAAGCTAAAATTTTATGTA-----ATAATTTCTGCCTTGATGAA-TTTA----ATTACATAATAGCTCAGAGTTTCTCAACTCTTG
s cb4.chrX             13644142 165 - 21540570 actttttcatgAGATTCTGATGTAC-AAACCCTCCA-----AT-AATCTCCAT-----------------CTGAGAACCTT----------CTATAAAGTCACGCGCTAT--CCGTA--------TTGTACCTTTCTCAGAGGAATCTCA---------AGTTGTGCT-----TTTTAATCTGTTTGTTTGGG-TTCC----ATGAGATTCTA---GAAACT---ATAATTCTC-
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33106221 191 + 33334924 --ttttttataaattacTGGGAA---AGAGTCTTAA---TCGT-TGTCTGCAGAATTGTGAgaatgagtttttggaataatacgtgcgaa-aagaaaaatcaagagattTTGTAGTGAG---TCCTTGAACA--ATTT---AAAATAt-----------atttgtgtt-----ttgaaat---attttctgaa-cacATTTCATTTAATTCTA---GAGAAA---CCAATTCAAG
i caeSp111.Scaffold629 I 32 C 0
s caePb3.Scfld02_0      2911554 204 -  4147112 --tttttaatagGTAGCTGAAAAGCCAGAG-CTTAAT-TTCGTATAGCTGCAG-ATAATGGGAGTG----TTGGAAATGTTTCGTGTGAATCTGAAGGTTCGCGTGACTT--CCGAGAA---TCGTTGGAGATTATTC---GGAATCTCA---CGAACGCTTTGTGTTCCTGACTTAATT---GTAGTTTAAACCACA----ATTCTATGCCAGTTGAGAAT---ACAA-TCTAG
i caePb3.Scfld02_0     I 4 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeRem4.Crem_Contig0  4404010 885 +  4500979 I

a score=90027.000000
s ce10.chrX             2162711 554 + 17718866  
s cb4.chrX             13644307 519 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4404895 519 +  4500979  
i caeRem4.Crem_Contig0 I 885 C 0
s caeSp111.Scaffold629 33106412 533 + 33334924  
i caeSp111.Scaffold629 C 0 I 48
s caePb3.Scfld02_0      2911758 591 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I

a score=-5428.000000
s ce10.chrX             2163265 23 + 17718866 CTACTGGATAAGAAACTTTTTTC--------------------------
s cb4.chrX             13644826 33 - 21540570 ----------------TTTCTCTGTTTTCCCTTCATCCTGTTTTTCTCT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405414 23 +  4500979 ----------------tttatgtttTCTCCGTCC----------TCTCT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2912349 13 -  4147112 ----------cgaaagtttctgt--------------------------
i caePb3.Scfld02_0     C 0 I 38
e caeJap4.Scaffold4951    65101 1463 +   152553 I
e caeSp111.Scaffold629 33106945 48 + 33334924 I

a score=-7088.000000
s ce10.chrX             2163288  9 + 17718866 ---------------------------AAAT--TTTCC--
s cb4.chrX             13644859 40 - 21540570 TAATCAACACGCATTGCTCATCAATAAGAAAAGTGCAGTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405437 28 +  4500979 TAATCAACAT---TCGCTCATCCATGAGAAG---------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33106993  9 + 33334924 ---------------------------GAAG--TGCAG--
i caeSp111.Scaffold629 I 48 C 0
s caePb3.Scfld02_0      2912400  9 -  4147112 ---------------------------GAAG--TGCAG--
i caePb3.Scfld02_0     I 38 C 0
e caeJap4.Scaffold4951    65101 1463 +   152553 I

a score=129641.000000
s ce10.chrX             2163297 201 + 17718866 TGCTCATTAGCCGCCCCCTCGGGATCGTTTT-TTGTTGCATCGTGTT---GCATCAGG----TCATCTCAAC-------TTGCTACTTTTTCCAGATGAGCTCTCGAATTTCGGTCTCCCTATTGCTGCTTGCTGTAGTGGCAACCATGTTCTTCACAGCCAATGTTGTTGATGCGACCCCAAGATCACAAGGAAACATGGTAAGTATGA--TACGAT
s cb4.chrX             13644899 189 - 21540570 TGCTCATTAGCCGCCCCCCTCGATTC------CCATTCTAGGGCATCAAAACATCATATATCTCATCTCATT-------TTGC------TTCCAGATGTCGTCTCGAATTTCGGTCACCCTTCTGCTACTTGTTGCAGTAGCAATCATGCTCGTGGGCGTCAATGTTGTTGAAGCTAACCCAAGGCCACAGGGCAACATGGTAATAGC----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405465 189 +  4500979 TGCTCATTAGCCGCCCCCTCGGAATCGTCT--CCGTTTTCCAG-----AGACATCACA----ACATCTCATC-------TTGC---TCATTCCAGATGAATTCTCGAATTTCGGTCACTCTCCTGCTACTTGTTGCAGTAGCAACCATGTTCATCGCAAGCAATGTTGTTGAAGCTAGTCCAAGACCACAAGGGAACATGGTAAGGATCA--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33107002 196 + 33334924 TGCTCATTAGCCGCCCCCTCGGGatcgtctc-tttttctagtGCATCAAAACATCA------TCGTCTCAGT-------TTGc---tcatttcagatgaattctCGAATTTCGGTCACCCTCTTGCTACTTGTTGCATTAGCCGCTTCGTTCATGGCAACCAATGTTGTCGAAGCCAATCCAAGACCACAAGGGAACATGGTAAGAGA----T-CAGC
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2912409 198 -  4147112 TGCTCATTAGCCGCCCCCTCGGGatcgtctcttttttctagggCTTCAAAACATCA------CCATCTCAAC-------TTGC---tcatttcagatgaattcTCGAATTTCGGTCACCCTTCTGCTACTTGTTGCAGTAGCAACTACGTTCATGGCTGTCAATGTTGTCGAAGCCAGTCCAAGACCGCAAGGGACTATGGTAAGAAG----TACAGA
i caePb3.Scfld02_0     C 0 I 34
s caeJap4.Scaffold4951    66564 209 +   152553 TGCTCATTAACCGCCCCCTCGGGATCGTCCCTCTTTGCTCCGCTATCAAAACATCGTCC---ACTTCCCAATAACcacattat---tttttccagatgAATTCTCGAATTTCGGTCTCCCTCCTGCTGCTTGTTATAGTAGC---CACGTTAACCTCCGTGAATGTTGTAAGTGCCAGTCCGAGGCCGCAAGGAAACATGGTGAGCATGAATTACATT
i caeJap4.Scaffold4951 I 1463 C 0

a score=-10244.000000
s ce10.chrX             2163498 43 + 17718866 GGAAGAAAAACAAATATTTGAACAACAAATATTTTAAAACAAA----
s cb4.chrX             13645088 29 - 21540570 ---GTTGATttgtacagtaaccca-----------caaattga----
i cb4.chrX             C 0 I 4
s caeRem4.Crem_Contig0  4405654 31 +  4500979 GAAATCAAGGGAAATATTGACAc------------ctaatcaa----
i caeRem4.Crem_Contig0 C 0 I 4
s caeSp111.Scaffold629 33107199 25 + 33334924 -------GAACGTACCACAGAACA-----------AGAATACA----
i caeSp111.Scaffold629 I 1 I 2
s caeJap4.Scaffold4951    66773 32 +   152553 ----TTAAAGGTATTAGTGACCCA-----------CTGAAACTTTCT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2912607 34 -  4147112 I

a score=79161.000000
s ce10.chrX             2163541 76 + 17718866 TTCAGATGCGTTACGGCAACTCTCTTCCAGCGTACGCCCCACATGTCTTATACCGTTTTTACAACTCAAGACAGGT
s cb4.chrX             13645121 76 - 21540570 ttcagCTCCGTTACGGAAACTCGCTTCCAGCCTACGCGCCACACGTTCTCTACCGTTTCTATAACTCGAGACAGGT
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0  4405689 76 +  4500979 ttcagctgcGCTACGGAAACTCGCTTCCAGCGTATGCACCACACGTTCTCTACCGTTTCTACAACTCCAGACAGGT
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33107226 75 + 33334924 -TCAGCTGCGCTACGGAAACTCGCTTCCAGCTTACGCACCACATGTCTTGTATCGTTTCTACAATTCAAGACAGGT
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0      2912641 76 -  4147112 TTCAGTTGCGCTATGGAAACTCGCTTCCAGCATATGCACCACATGTTCTGTACCGTTTCTATAATTCGAGACAGGT
i caePb3.Scfld02_0     I 34 C 0
s caeJap4.Scaffold4951    66805 76 +   152553 TTCAGATGCGTTACGGCAACTCACTTCCCGCCTACGCCCCACACGTTCTTTACCGATTTTACAACTCCCGGCAGGT
i caeJap4.Scaffold4951 C 0 I 40

a score=-8390.000000
s ce10.chrX             2163617  8 + 17718866 GC------TCACTA--------
s cb4.chrX             13645197  8 - 21540570 GA------GAGATT--------
i cb4.chrX             C 0 I 28
s caeRem4.Crem_Contig0  4405765  8 +  4500979 GA------GAAACA--------
i caeRem4.Crem_Contig0 C 0 I 39
s caeSp111.Scaffold629 33107301 21 + 33334924 AATCTCACAAAAGTTGG-AGAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2912717 16 -  4147112 GA------ATAAATTGATAACA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    66881 40 +   152553 I

a score=-9491.000000
s ce10.chrX             2163625 34 + 17718866 ----CTTTCGTACTTTCAGAATTCAATAATCTGAAAAT-------------
s cb4.chrX             13645233 39 - 21540570 CT-TTTGTTGT------AAAATTTGATACCC----AAT-CCATTGAATCGT
i cb4.chrX             I 28 C 0
s caeSp111.Scaffold629 33107322 19 + 33334924 CT-----TTG------------TTAATAAGT----AGT------GA-----
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2912733 30 -  4147112 CTCCCTCTAG------------CCCATGCGG----AATTCCAACAT-----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    66881 40 +   152553 I
e caeRem4.Crem_Contig0  4405773 39 +  4500979 I

a score=104617.000000
s ce10.chrX             2163659 108 + 17718866 TTACAGTTTGCTCCAATAAACAAGAGAAACAACGCCGAAGTAGTGAACCATATTCTCAAAAATTTTGGAGCTCTGGATCGACTTGGAGACGTTGGCAAGTAAAAGTGC
s cb4.chrX             13645272 107 - 21540570 TTACAGTTTGCCCCTCAAATGAAGCGTAACAACGCTGAAGTTGTGAATCATCTTCTCAAGAATTTCGGCACGTTGGATCGTCTCGGAGATGTTGGCAAGTAAACACG-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405812 108 +  4500979 TTACAGTTCGCTCCACTTAACAAACGAAATAATGCCGAAGTCGTCAACCACATCCTCAAGAACTTCGGAGCATTGGACCGTCTCGGAGACGTTGGCAAGTAGACGTGG
i caeRem4.Crem_Contig0 I 39 C 0
s caeSp111.Scaffold629 33107341 108 + 33334924 TTACAGTTTGCACCTCTGAACAAGCGCAACAATGCTGAAGTTGTTAACCACATTCTCAAGAATTTCGGTGCGTTGGACCGTCTTGGAGATGTTGGCAAGTAAACGTGC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2912763 108 -  4147112 TTACAGTTTGCTCCGCTGAACAAGCGTAACAACGCCGAAGTCGTGAACCACATTCTAAAGAACTTTGGTGCCTTGGACCGTCTTGGAGACGTTGGCAAGTAAACGTGC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    66921 108 +   152553 TTACAGTTCGCTCCATTAAACAAACGAAATAACGCCGAAGTCGTCAACCACATCCTCAAGAACTTTGGGGCTCTTGACCGACTCGGAGACGTTGGCAAGTAGACGTGC
i caeJap4.Scaffold4951 I 40 I 1319

a score=5963.000000
s ce10.chrX             2163767 52 + 17718866 ACACGGATCTGATA-----ATTTCTAAAAGCACTTGTAGTTGAACACTTATTCACTT
s cb4.chrX             13645379 48 - 21540570 ---TGGATGTGATGGCACCATTTCCACTTG---CTAATGA--AAC-CCCAATAATCT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405920 53 +  4500979 AC-TGAATCTGACAGCACCACTTCT-TTTGCATCTTATGT--TACATCCAATAACCT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33107449 56 + 33334924 AC-AGGATCTAATGGCACAAGTTCTTGTTGCACCCACCGTTGAAAACCAATTAATCT
i caeSp111.Scaffold629 C 0 I 30
s caePb3.Scfld02_0      2912871 55 -  4147112 GC-TGGATATGATGGCACAATTTCTTGTTGCACCTTCTGTT-AACCCTTATTCATAT
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951    67029 1319 +   152553 I

a score=-4660.000000
s ce10.chrX             2163819 27 + 17718866 ------TTGA------AAGTTGGCATAGTT-----------------TTTGAGACC--
s cb4.chrX             13645427 35 - 21540570 ------CTAAAACCCGTCTTTGACTCTTAT-----------------TGTGTGAACCC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4405973 29 +  4500979 ------TTAA------CCGTTGAATAACAA-----------------TGTGTGAACTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2912927 47 -  4147112 TTCTTATTAG------CCGTTGaccttaaaaaaaacaaaaccaaccGTATGTG-----
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e caeSp111.Scaffold629 33107505 30 + 33334924 I

a score=-18157.000000
s ce10.chrX             2163846 175 + 17718866 ---------TGAACA-----------ATTGCCAATT---------------CTATGTTT---------------------ACTTTTGCATTCCATAATATA---TTTTTCACCATTCTCTCAAATTC---TCTGATTCTGACTGA---GGCTACCACAAAACCGATTTATTCTTTGCT---TTAAT-CGATAT-------TTT-CG--TACAACTGTGCTG---A-------TTCTT---TATGTCACC-TGTGACACCGA--AACCTGT
s cb4.chrX             13645462 216 - 21540570 TAAACCGAACCGACCCTGAAAACCttatttatatttatttttatcgtattgctttgctttatattaCCACGCGACAAAACACTatcattatct----------ttttttttccattctctcaaatttttgttgattcttGAACTTTTAAGTGAGGCTAC-------TTCccgatttcaaaactttt---cccC-------CTGCTG--TATGACTGTGCCGAGAA-------CCCCTCAAATCGTCT------------------TCTTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4406002 195 +  4500979 GAATTT---CCGACC-----------AATTTCATTTATTCT----------CTTTGCCT-----------GCTCCCTGATACTGTTGCAAtcc----tatatattttttctccat--tctcaaattcat-ttctttattaAGCAT---AATTACCCTTC-------CTATCCCTTTCCTATCTATTACACTCT-------TTTCCG--TATGACTGTGCTG---A-------TCCTTC--GTTGTCCA--CGTGACAACACAAAATCTGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33107535 199 + 33334924 ---------TGAACACTGAA------Caccatatttatttt----------tgccGCTC---------AT-TAA------ATTACTGTTGCCCgacctgaaaatttttcttccattctctcAAAT---T-CCCTCTTATTAATAT---TGCTACCCCAT-----AATTCTTCCCTTCTCAATTAAT-CGACCC-------CTCATG--TATGACTGTGCtg---atttcctcttctt---tttgtcatt-CGTGACAATGC-CGACctgt
i caeSp111.Scaffold629 I 30 C 0
s caePb3.Scfld02_0      2912974 211 -  4147112 ---------TGAACACTTAAATCC--TACAATATATAATCC----------GCCTGCTT---------ATATAACCCTTTACCGCCGCCGCCCAACctata---ttttttcccattctctcaaatttat-ttcttctctttgtaT---CGCTACCTTATTGCAAAATTCTTCGTTTACCCAT---T-CAACCTTATATTGTTTATGACTATGACTGTGCTG---A-------TCCTT---GTTGTCCCGACATGACAA-----AACCTAT
i caePb3.Scfld02_0     C 0 I 397
e caeJap4.Scaffold4951    67029 1319 +   152553 I

a score=4464.000000
s ce10.chrX             2164021 11 + 17718866 TGAAAATAAAA
s cb4.chrX             13645678 11 - 21540570 TGACAATACAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4406197 11 +  4500979 TGAAAGTAAAA
i caeRem4.Crem_Contig0 C 0 I 185
s caeSp111.Scaffold629 33107734 11 + 33334924 tgaaaataaaa
i caeSp111.Scaffold629 C 0 I 233
e caePb3.Scfld02_0      2913185 397 -  4147112 I
e caeJap4.Scaffold4951    67029 1319 +   152553 I

a score=422.000000
s ce10.chrX             2164032 194 + 17718866 TGCTACTTGTTCA---ATAAACGCTTATT----CAGTTGATTTTCGTTGTGCTGCAAAAGGAAAGACAT--ACGGAAAAATGCAAAGTTTCGACAGGAACTCAATTCGTTAAAAATTGGCAATGGAGAAATTGCCTGTGAGAAAATTATTAAATATCCAAATAA----------AACGATTCTAAAAATTCTCGAAA-TGTTTTTTATTttaaa
s cb4.chrX             13645689 203 - 21540570 ATCT-CCTGTTAACATAAAAATTCTTAATGTGGAAATAAATATTCTTACTGTTGCGAAATATTAGATTTTGACTAACAAGGGAAAGGTTTTGA----AAC---ATCCTTCGAGAATTTGC---TGAATATTTTCGTTTGAAAAGGCTTttaaatgtttcgaaaattatatCTCTATCATTTCtgaacatttaaaaaactattctgcactttaga
i cb4.chrX             C 0 I 1712
e caePb3.Scfld02_0      2913185 397 -  4147112 I
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e caeSp111.Scaffold629 33107745 233 + 33334924 I
e caeRem4.Crem_Contig0  4406208 185 +  4500979 I

a score=0.000000
s ce10.chrX             2164226 673 + 17718866  
e caePb3.Scfld02_0      2913185 397 -  4147112 I
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeSp111.Scaffold629 33107745 233 + 33334924 I
e caeRem4.Crem_Contig0  4406208 185 +  4500979 I

a score=280.000000
s ce10.chrX             2164899 24 + 17718866 AATATCCCAGAGATGTTT---CAAAGG
s caeSp111.Scaffold629 33107978 27 + 33334924 AATATCAAGAAAATGTCTTTCCACACA
i caeSp111.Scaffold629 I 233 C 0
e caePb3.Scfld02_0      2913185 397 -  4147112 I
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4406208 185 +  4500979 I

a score=142.000000
s ce10.chrX             2164923 6 + 17718866 TGAATG
s caeSp111.Scaffold629 33108005 6 + 33334924 AGAGAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913582 6 -  4147112 TGAAAC
i caePb3.Scfld02_0     I 397 C 0
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4406208 185 +  4500979 I

a score=2719.000000
s ce10.chrX             2164929 7 + 17718866 AACAGCT
s caeRem4.Crem_Contig0  4406393 7 +  4500979 AGCAGTT
i caeRem4.Crem_Contig0 I 185 C 0
s caeSp111.Scaffold629 33108011 7 + 33334924 AACAGTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913588 7 -  4147112 GGCAGTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    67029 1319 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=25412.000000
s ce10.chrX             2164936 237 + 17718866 GCTTCTCCGCCACGTAAGATATAAGATTAATCAAAAACTAAAAAAAAAGGTAGGTCAGGTGTCCCTCAACGAGACTTTCGAGAAAAGCAGATCTGTGATTAATTGA-GAAGTGCGAAATTTTCCGTTCCGCGGTCC----CAT----AGCT-TTAGTCTTA--TTGTATCGGAGAAGTATGCAGTCTCCTTCATCAAACATTTTATTCTATATTCTAGCAGTATT-CCTCTTTTCTGTCACTGACTCATT----
s caeRem4.Crem_Contig0  4406400 227 +  4500979 GCTCAGTCGCCACGTAGCCCACCGgattaatcaaa------aaaaaaaggtagGTCAGGTGTCCCGAAACGAAACTTTCGTGGAAAGCACGGATAAGATTAA-TGATGCAGTGCG-AACTTTTCGTTCCGC--CCT--------TCGGGAT-CGCGGCACATATTGAATCAGTTGGCGATGAATCCCCCCATCGGA---GGTTTATTTTTAGTTACGATCgtctt-tttcgtttctttctctGAATCGTT----
i caeRem4.Crem_Contig0 C 0 I 22
s caeSp111.Scaffold629 33108018 229 + 33334924 GCTGATACACCACATAACCCTCTAGATTaatcaaaaactagaaaaaaaggtaGGTCAGGTGTCCTCTCGCGAAACTTTCGAGAAAAGCACGGATAAGATTAATTGA-AAAGCGAG-AACTTTCTGTTCCTC--TTC----AATCTCGAACCGCGGATGCCAT-TCGTATCAGTTAACAATGCAACCTTCTATACGA---GCTGCAATTTGTCT---Agttctcttatttttattttgtttccat----------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913595 219 -  4147112 GCT--CCCACCACGTAA----CGAGATTAatcaag---ttaaaaaaaaggtaGGTCAGGTGTCCCTTCGCGAAACTTTCGGGAAAAGCACACGCGAGATTAA-TGG-AAAGCGAG-AACTATCTGTTCCGC--TCT----CAT-TCGAGCT-TGCAT-CCAT-TCTTTGCGGCTGACAATGCAACCTTCTATACGA---Gctacttttcatttcacaattttcct-TTCTTATTGGTTTTCTGTA---------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68348 228 +   152553 GTTGTTCCACCACATAATCTCTCTGA-Taatgaaa---cacaaaaaaaaactggacaGGTGTCTTTTCTTGAAAC-----GCGGGAGCACGGATCTGATTAA-TGAAAAGGTGAT-AACCTTTCTTCTCGT--TTTCCCACATCTATAGCT-GTTGC-TCA--TTGGAAC----AACTATGGGTTCTTCAAAACTA--CGGTACATTGTTTCTT--TATTATTGC-ATATTGTTTTATCACTAGAAGATTCACT
i caeJap4.Scaffold4951 I 1319 C 0
e cb4.chrX             13645892 1712 - 21540570 I

a score=-3244.000000
s ce10.chrX             2165173 13 + 17718866 GAACT-------TTTTATCA---
s caeSp111.Scaffold629 33108247 15 + 33334924 GAAGTTA-----TGTGTTCT---
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913814 18 -  4147112 GAAGCTG--AATTACCATCT---
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68576 22 +   152553 -AACTGGAAAACTTtcttcattt
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4406627 22 +  4500979 I

a score=821.000000
s ce10.chrX             2165186 82 + 17718866 GGAAATTTGACGGAAGCAGAGAACTTAGAGAGATTAGCCACATGTGGAAGTAGCCAGCAGTGAGTAA--ATCTCATTTTGGTAA
s caeRem4.Crem_Contig0  4406649 77 +  4500979 GGTAAACTCACAATTGCCGAGAACGAGGAACGAATGGATGTTTGTGGAGTCCACAATCTGTGAGTGA------ATTGTGACAA-
i caeRem4.Crem_Contig0 I 22 I 20
s caeSp111.Scaffold629 33108262 77 + 33334924 GGAAGACTAACTGAGAAGGAGAATCTTGCAAGACTTGAGGCATGTGGGAAAACTACACAGTAAGTA-------CATATGAATGT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913832 78 -  4147112 GGTAAACTAACAAAGGAAGAGAACAATGAACGATTGGAAACTTGTGGAAAGATTATAGAGTAAGTAC------CATGTTAGTGC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68598 62 +   152553 gaaaattcgattttGGCAGAAA------------------CGTGCGGCAAACATACTCAGTAagtgctaattttttttta----
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13645892 1712 - 21540570 I

a score=-1721.000000
s ce10.chrX             2165268 18 + 17718866 -TTTC---------ACTATAA-ATTTTTG
s caeSp111.Scaffold629 33108339 28 + 33334924 -TCTTTCTAACACCACGTCAAGATTATTG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913910 19 -  4147112 -TCTG---------AAATCATTATCATTG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68660 20 +   152553 attta---------ctaTTACTTTCCTTG
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4406726 20 +  4500979 I

a score=30124.000000
s ce10.chrX             2165286 172 + 17718866 TTT--------CAGGAAAGCAAACGAGTATGGTGGAATATTTTTGAAAGACGAAACTAGTTCACATTTTCGGAAATATCTTATCGCTCTTTCGTCTAGACATTTAGTTCTAAACCCTGGCTCAAAAACATTAGGCTTCATTTACAAGAAAGAAGAATGTCGAAATAAGtaat--------taa----taatt
s caeRem4.Crem_Contig0  4406746 184 +  4500979 TTC--------CAGAAGGGACTTGGAGAATGGAGAAACTGTTGTCAAAGAGAAGGTCAATTATCCCTCTTCGAAATATCTAACGGCACTGTCCACCAGACATATCATCCTATCTCCACTCTCAAACTTGTTGGGATTCATTTACAATAAGGATCAGTGCAAAAACAAGTAGGAACAGATGCAATCCTTCAGT
i caeRem4.Crem_Contig0 I 20 C 0
s caeSp111.Scaffold629 33108367 176 + 33334924 --T--------CAGAGAAGAACATGAGTACGGAGGCATATTTCTCAAAGATGAAACCAATTCGCACTTCCGAAAGTACCTTATTGCTCTCTCGTCTAGACATGTGGTTGTAAACCCTAGTTCAAAAACCTTGGGATTTGTCTACGATAAAGAAAACTGCAAGAACAAGTGAG--TTGGTGGAA----TGAAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2913929 187 -  4147112 --TAATACCGACAGGGCTGAGAACGAGTATGCAGGTACATTTTTGAGAGTTGACAACAATACAGACTTCAACAAGTACATCATTGCACTCTCGTCTAGACATGTGGTCTTGAACTCGGATTCCAAAATGTTGGGATTCagttacaacaaaaaagactGCAAGAACAAGTTTG--TTTATATAA-CAGTTact
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68680 172 +   152553 TTT--------AAGATCTGAAATTGAATATGAAGGACTTTTCTTTGATGGTGTCACATCTACGCAGAAGAAAAACTACTTGACCGCTATTTCTTCCCGTCACATTATTGTGGATGCAGCTTCCAACTTCTTAAACTTTAAATACGATACAGAAAAGTGCAAAAACAAGTAAT--------TAG-CATTT---
i caeJap4.Scaffold4951 C 0 I 139
e cb4.chrX             13645892 1712 - 21540570 I

a score=1811.000000
s ce10.chrX             2165458 140 + 17718866 aataacagtataaaatatataatGTTTGATTCAGCATACAAAAATTCAAAATCAACTCAAACCAGCATTGGCCGGGGAAACTCAATCATGAGAAAACGGTAA----CTT------AAAAAAGTAACAATTTTAG-ATAGTCGCAGTACTT-----T
s caeRem4.Crem_Contig0  4406930 121 +  4500979 TTTTATAGTA---------------ATTATTCAGTATCCAAGTCTTCAAAATCAACTCAACACCAAATGTGCCTGGAAAACTGAACGAAGAGTTGAAGGTTGTT--CTT---------ACAGTAG----TTTGG-----CCACaatcataaaaatt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108543 128 + 33334924 TATTGTACTATAAGA----------GTGTTTTAGCATTCAAAAGTTCACTATCGATACGGTTCAACAATGGCCAGGGAAACTCAATGATAAGAAGGAGGTACTTTActtgatattgaaaatgtga----tATAA-GTTTTCAC-------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914116 127 -  4147112 tatttgaaaactag-----------TTACTTCAGcattcaaaagttcacaatCAACACTGATCAAGTGTGGCCAGGGCCtctcaatgaaaacaaacagGTAGGTAATCT---------AGcgtgt----tttcatgttttcatgaTATTA-----T
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    68852 139 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=30264.000000
s ce10.chrX             2165598 65 + 17718866 TTTCAGGCGTATTACATTGGTTCATGTGAAGAAGACTCTCCACGTGGTTTTGTAATAGTTGAGCA
s caeRem4.Crem_Contig0  4407051 65 +  4500979 gtttagGCTCACTACATTGGGTCTTGTGAACATGACGTCCCACGTGGATTTGTGATTCTTGAGCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108671 61 + 33334924 ----AGGCATTTTACATTGGATCTTGCGAATATGATGTACCACGTGGATTTGTAATCGTTGAGCA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914243 65 -  4147112 ATCAAGGCATATTACATTGGTTCATGCGAGCACAATTCACCGCGAGGATTTGTCATTGTTGAACA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    68991 65 +   152553 TTTCAGGGACATTACATTGGATCTTGCGATGGAGAGTTTCCACGTGGTTTTGTGGTTTTGGAGTA
i caeJap4.Scaffold4951 I 139 I 333
e cb4.chrX             13645892 1712 - 21540570 I

a score=1347.000000
s ce10.chrX             2165663 46 + 17718866 CAAGTTACATTTACCGGATATCTACTCACCTC-ACTGTTTACCGGGT
s caeRem4.Crem_Contig0  4407116 46 +  4500979 -ATCTCTGCCAAACCTCCGGAATCTAGTTTTTAACTGTTTGCCTGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108732 46 + 33334924 CAGTTTGAATTCTCCACATAAGTATAGTTGGC-ATTGTCTACCGGGT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914308 46 -  4147112 AAGCTTGGCCGAGCCGAACGTGTATATTCCAC-ACTGCCTACCAAGT
i caePb3.Scfld02_0     C 0 I 60
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=-334.000000
s ce10.chrX             2165709 5 + 17718866 CAGTT-
s caeRem4.Crem_Contig0  4407162 5 +  4500979 TAGTT-
i caeRem4.Crem_Contig0 C 0 I 60
s caeSp111.Scaffold629 33108778 3 + 33334924 ---TTT
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2914354 60 -  4147112 I
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=377.000000
s ce10.chrX             2165714  9 + 17718866 GAA--CAAAAT
s caeSp111.Scaffold629 33108781 11 + 33334924 GAATGCAAAAT
i caeSp111.Scaffold629 C 0 I 28
e caePb3.Scfld02_0      2914354 60 -  4147112 I
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4407167 60 +  4500979 I

a score=0.000000
s ce10.chrX             2165723 7076 + 17718866  
e caePb3.Scfld02_0      2914354   60 -  4147112 I
e caeJap4.Scaffold4951    69056  333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeSp111.Scaffold629 33108792   28 + 33334924 I
e caeRem4.Crem_Contig0  4407167   60 +  4500979 I

a score=182.000000
s ce10.chrX             2172799 17 + 17718866 TTTCAGATAAGGTTCAC
s caeSp111.Scaffold629 33108820 17 + 33334924 TTTCAGATTCCCCTATC
i caeSp111.Scaffold629 I 28 C 0
e caePb3.Scfld02_0      2914354 60 -  4147112 I
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4407167 60 +  4500979 I

a score=1322.000000
s ce10.chrX             2172816 13 + 17718866 AAAAATGGATCAG
s caeSp111.Scaffold629 33108837 13 + 33334924 GAAAATGGCTCTc
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914414 13 -  4147112 AGAAATGGTACTG
i caePb3.Scfld02_0     I 60 C 0
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I
e caeRem4.Crem_Contig0  4407167 60 +  4500979 I

a score=7110.000000
s ce10.chrX             2172829 68 + 17718866 AAGTCGAAGTATTTACAACAATGAACGCTACTGCTCACTCTTTAGAGTTCATAAGAACTAAAGTGATT
s caeRem4.Crem_Contig0  4407227 66 +  4500979 AAGTAGAAGTCATCACCAAGCCAAACCCCACTGTTCCTGTTGAGCAATACATCACAACCAATGTAT--
i caeRem4.Crem_Contig0 I 60 C 0
s caeSp111.Scaffold629 33108850 67 + 33334924 aaattgaagttttcacTACGTTGAATGCAACAGCTCACTCGTTGGAATTCATCATCACTAAAGTGAT-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914427 68 -  4147112 AACTTCAAGTATTCACCACCCTCAATGTCACCCTCCAAGCCATAGAGTATATAGTCACGAAGGTACTC
i caePb3.Scfld02_0     C 0 I 34
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=-3224.000000
s ce10.chrX             2172897 30 + 17718866 TTAAAAAAATTCTTGATA----------AACAAAAT----TGGT
s caeRem4.Crem_Contig0  4407293 34 +  4500979 ------GAATCATTCACGCTATCacaacgaaaaaataaaa----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108917 32 + 33334924 --AAAAGTGTCACTTGTG--ATGGTTTCAATAAACT--------
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2914495 34 -  4147112 I
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=3117.000000
s ce10.chrX             2172927 30 + 17718866 ----TTTAAGATTCACGTCTGTAATGACATCCCG
s caeRem4.Crem_Contig0  4407327 34 +  4500979 tttaatccAGGTTAACTTCTGCAAAAATATGTCG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108949 30 + 33334924 ----TTTCAGGCCCACAACTGCGAATGTTTTCCC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914529 30 -  4147112 ----TTCCAGGCACACTTTTGCAAAGACCAGCTC
i caePb3.Scfld02_0     I 34 C 0
e caeJap4.Scaffold4951    69056 333 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=5515.000000
s ce10.chrX             2172957 557 + 17718866  
s caeRem4.Crem_Contig0  4407361 629 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33108979 637 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2914559 632 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    69389 563 +   152553  
i caeJap4.Scaffold4951 I 333 I 104
e cb4.chrX             13645892 1712 - 21540570 I

a score=18828.000000
s ce10.chrX             2173514  90 + 17718866 AGAAAAAATTATTATCCTCTTCGAATCAGAGGAATCTCAAGACGAATC---AGATTATGAACCCTTTGTGATATCTGCTGTGCC-----AGAAGA-------------------------TTC
s caeRem4.Crem_Contig0  4407990 120 +  4500979 TGAAAAAGTTCTCATCCTCTTCGATTCGGATGGGAATGAATCGGAACCAGTGAACTATGAACCGCTTGTGATGTCTGTTGTACCAgaacagaaaa---ttgatgagCCAGCACCGCAAGACTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33109616 120 + 33334924 AGAGAAagttctcattctttttgaatcggAAGAATTAGAAACTGAGCA---AAACTATGAGCCGCTTGTCCTATCCGTCGTACCTCACGAAAAAATGTCAGAGCCGATTGCTCCGCAAGAGTC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2915191 117 -  4147112 TGAAAAAGTTCTCATACTCTTCAAGTCGGAAGAAGCAAGCACTGAAAC---GGACTATGAGCCGATTGTAATGTCAGTTGTACCCCAAGAGAAAA---CCGAGTCTCCAGCACCGGAAGCGTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    69952 104 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=48535.000000
s ce10.chrX             2173604 259 + 17718866 GACTATTGTGCGAGCAGAGCCATTCTCCGCTGTGATCATACCACTCCCCGAGCACACAATCGAATCTAGCATCAATCAAGAATTTTCGACGCCAGAGGAGCTTTTGATAGCTTTTCTTATCATGTTATCCCTTACATTTTT-TGTTCTGATG-TGCGTCTATGGTTTTGTTGAATACACGGGAAAACCATATTACTGGAATATTGATTTGGGAAACAATCCAGTCTGAG-------TTGTCATAATTTTT-------ACTACGGTTT-------------TTTAAT-AA--
s caeRem4.Crem_Contig0  4408110 269 +  4500979 AACTATTGTTCGTGCCGAGCCTCGATCCGCTGTGATCATACCACTTTCTAAAACAGATAGCAAAGTTTCTATCACTTCAGTGACTCCCTCAAAGCGTGCATTTTTGATCGTAGCTCTCAT--TGctatctctctcatttttctgatccaGTGCTGTCTCTACGGCTTCTTTGGATACAAAGGCGCAGTCTACTACTGGAGACCGCTCAGAAGAAATGCCTCCGCCtaaatcgaaaatttgtgTGTCTTAG-------AATACGGTTAGAT----------TCTAGA-AC--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33109736 254 + 33334924 GACTATTGTTCGAGCGGAGCCCTTCTCCGCAGTGATCATACCAATTTCCGAGAATGACA------ATGATGCAAGATCAGAGTTCTCCACGCCGGAAGAACTTTTGATCGCATTTCTCATCATGCTCTCCctcacattttt-tgttcttatG-TGCCTTTACGGTTGCGTTGATTACGAGGGAAAACGAAATTACTGGAAACCATATTTAGGAGAGATTCCTGTTTAAC----------CAGTGTTCAAC-------AATACGGTTTTACG---------ATTAGA-AC--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2915308 274 -  4147112 GACTATTGTTCGGGCGGAGCCATTCTCCGCTGTGATCATACCACTTCCCGAgcataacaaaaaagataacatAAGATCAGAGTTCTCCAGTCCAGAAGAACTTCTTATCGCGTTTCTCATCATGCTAGCTTTGGCTTTCTA-TGTGCTCATG-TGTCTCTACGGTTGTATCGACTACAAAGGAAAACGAAACTATTGGAAGCCAAACGTCGAAATTATTCGCGCCTAAC-------ATTTCATGTTCAGATTGTTCGAATACGGTTTTCTA------TACTTTAGATAT--
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    70056 270 +   152553 AACGATTGTGCATGCAGAACCATATTCTGTAGTTATTATCCCACTCTCGGAACAGGAAGAAGGGAAAATCAAAAGTGAAGATTTCCCTTCTTCTACAGAACTGTTGATAGCTTTTCTCATCTCTTTATCACTTTTCTTCTA-CGTCTGCATG-TGTTTGTACGGTTTTGTTGATTACAAAGGAATTCCTGTGttttggaaggttgatttaggagttttaccggtttagc-----------cttatttttt-------gttgttgttatctttttagctgttttata-acaa
i caeJap4.Scaffold4951 I 104 I 3721
e cb4.chrX             13645892 1712 - 21540570 I

a score=-42961.000000
s ce10.chrX             2173863 125 + 17718866 ATGTCTGTTTTTTTGT---------Gaaaat-----------------------aaatatactaatttatt--atttgcaaaataaattatatatC---------------------------------------GTTGAAAAATGATTAA----AAAAATCCCAAA-----TCA------------------------AAACCCAACCC--------TGGCAAAAAAGAAAAAG--GAAT
s caeRem4.Crem_Contig0  4408379 123 +  4500979 GTG--------TGttt---------taatttcttt----------caatgaataaaatgttttatttcaat--tct-----gAACATTTGTGACCT---------------------------------------TTATGAAGGCAAACG-----ATAAATATGAAA-----CTACTTACTAA---TT-----------ACACCGA---------------CAAAAATAAA------TACC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33109990 152 + 33334924 GTGTCAGAGATtttat---------aaactttttt----------caattgttcaaGTTTATTG-TTCGTT--ATT-----AAAGAGTAGGGAAAC----------------------------------------CCAGAAATCGATCACA-ATACAGACATTAAAGAATTTGAAGTTCAAACACTT--CAGCA----AAACccaaa-------------taaagagaaaaagt--agac
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2915582 151 -  4147112 CTGTCAAATAGttgtt---------gaatgaattt-------------ttgctggaaatca------catca-att-----aaaaaattcaaaaac---------------------------------------atcggaaaaaGAACCC----ACACACATTAAA-----CTACGTACGAAAACTGTACAGTAACATACactcaaaat--------ctttgaaaattaaaatttcaaac
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    74047 223 +   152553 atgtcgaattttatttttattgtgaaaaagagcttgaaataaagaaaaagaatAATAAATATTGCATCATCACATT-----AGAAGGTAATTTATCTTCCATGCATATATACATATACACATACATATGATGGATTTTCAATATCAATCACATTTAAAAGCTAACGA-----GCAAGTGCATA---TTTCCAAAAG---AAATTTGGAATGGTtgctatggaaaaaaaaacagag--aaat
i caeJap4.Scaffold4951 I 3721 I 55
e cb4.chrX             13645892 1712 - 21540570 I

a score=-4289.000000
s ce10.chrX             2173988 26 + 17718866 GATTCTTCA-------GTTTCA-----AATAATACATT
s caeRem4.Crem_Contig0  4408502 31 +  4500979 AACGCTCAA-------GTTCTAGGAGTAGCAAAATACT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33110142 38 + 33334924 ATTACTTACCGTTTTGGTGAGTGGAATGTGAACAAAct
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2915733 30 -  4147112 gttACTCAT-------GTAACTGGGA-ATGGTTATCTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    74270 55 +   152553 I
e cb4.chrX             13645892 1712 - 21540570 I

a score=-6060.000000
s ce10.chrX             2174014 17 + 17718866 CAATAA---ATTAGTTGATT
s caeRem4.Crem_Contig0  4408533  6 +  4500979 CAAAGC--------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33110180 19 + 33334924 tggaaatt-tttcaacaaat
i caeSp111.Scaffold629 C 0 I 37
s caePb3.Scfld02_0      2915763 20 -  4147112 TAGACCTTATTTAGGCAAAT
i caePb3.Scfld02_0     C 0 I 42
s caeJap4.Scaffold4951    74325 14 +   152553 TAATAA---ATTAAACG---
i caeJap4.Scaffold4951 I 55 C 0
e cb4.chrX             13645892 1712 - 21540570 I

a score=97781.000000
s ce10.chrX             2174031 135 + 17718866 TCTACAACTACACAAGTTTTCACCATCATATCGTAGAAGACACGTCCTCTGTTAATCTGGAAAACTGCGGTGCTCAGTGGGAAAAAGCTACTGACCACCAAGTTTTTTATGAATGATCGCTTCAGGGCCCTGCAA
s cb4.chrX             13647604 135 - 21540570 TCGACCACGACAACGGTCTTCACAATCACATCATAGAAAACACGACCATTGTGAACTTGGAAAGCGGCAGTGCTCAATGGGAACAAGCTGTTGACAACGACATTCTTCATGAAGGAGCGTTtcattgatctgaaa
i cb4.chrX             I 1712 C 0
s caeRem4.Crem_Contig0  4408539 135 +  4500979 TCCATTACAACCACTGTTCTAACAACCACATCGTAGAAAACACGTCCATTGTGAACTTGGAAAGCAGCAGTGCTCAATGGAAACAGGCTGTTGACCaccacatttttcataaaGGATCGTTTCAGAGATCTgagg
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33110236 135 + 33334924 TCAAAAACAACAGCAGTACCGACGACACAATcatagaaaactcttccgTTTTGAATTTGGAAAGCAGCAGTACTCAATGGGAATAAACTGTTGACGACGACGTTTTTGAGGAAAGAACGCTTTAGagctctgaaa
i caeSp111.Scaffold629 I 37 C 0
s caePb3.Scfld02_0      2915825 135 -  4147112 TCAATGACTACACATGTTCCAACCAAGCAGTCATAGAAAACACGTCCATTGTGAACTTGGAATGCAGCGGTGCTCAATGGGAAGAGACTGTTGACGATGACGTTCTTCAAGAAGGACCGTTTGAGTGCTCTGAAA
i caePb3.Scfld02_0     I 42 C 0
s caeJap4.Scaffold4951    74339 135 +   152553 TCCATAACTACCACCGTTTTCAAGACAAAGTCGTAAAAAACGCGACCATTGGTGACTTGGAACGCAGCAGTGCTTAGCGGAAACAAACCGTTCACCACCACGTTTTTCAAGAATGAGCGCTTCATCGATCTGAAA
i caeJap4.Scaffold4951 C 0 I 1612

a score=-288.000000
s ce10.chrX             2174166 3 + 17718866 AAA
s cb4.chrX             13647739 3 - 21540570 aaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4408674 3 +  4500979 aaa
i caeRem4.Crem_Contig0 C 0 I 29
s caeSp111.Scaffold629 33110371 1 + 33334924 a--
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2915960 0 -  4147112 C
e caeJap4.Scaffold4951    74474 1612 +   152553 I

a score=-786.000000
s ce10.chrX             2174169 4 + 17718866 TAGA-
s cb4.chrX             13647742 4 - 21540570 ttga-
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33110372 4 + 33334924 -caaa
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2915960 0 -  4147112 C
e caeJap4.Scaffold4951    74474 1612 +   152553 I
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=242.000000
s ce10.chrX             2174173 4 + 17718866 ATGA
s caeSp111.Scaffold629 33110376 4 + 33334924 ataa
i caeSp111.Scaffold629 C 0 I 17
e caePb3.Scfld02_0      2915960 0 -  4147112 C
e caeJap4.Scaffold4951    74474 1612 +   152553 I
e cb4.chrX             13647746 0 - 21540570 C
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=-2032.000000
s ce10.chrX             2174177 347 + 17718866 ACGGTTGTGTCCTTGGTTATTTGTAAAAAATACCGGATGAGCCATAATTATGTTGACAAAAACATTCGCTTAAAAAATTTGGAGGGTGAGTTCAAACATAGTAAATTAACGCGAGTTTGTCTTGTTATGATTTAGATAATATTTTTTGCAACCGAATTTCAAAATTGTGATTTGGAATTTTAGGTGGATCTTGATTGGCTAACTAGTAAGTCGGAGAGGCTTCTTATCATTCCTTGAACATTTTTATTGGAAGTCA---AAAAGTGACAAATACTgagtttttgaggaaactatagcactgtcgcatatttgaatccctactatttttga-aacATAAAGA-------AACTTTGATC
s caePb3.Scfld02_0      2915960 196 -  4147112 ----TTGTGTTGCTCGTCATTTGTAAACACTA------------------------------------------------------------------TACTAACT--ATTCAAGTTTATCT-------------------------------GAACCTCG---TTTTGCATTGACATTC----------------------------AGCCAGAGAAACCTGCTATTATT------------TTACTTGCAATCAGGGACGAGCGGCAA-TGCTGTTTCTCTG---------------TTCCCGATTTTTTAGTCGCTGATATTTTTGGCAGTACAAAAATGTTcacgattttgatt
i caePb3.Scfld02_0     C 0 I 110
e caeJap4.Scaffold4951    74474 1612 +   152553 I
e cb4.chrX             13647746   0 - 21540570 C
e caeSp111.Scaffold629 33110380  17 + 33334924 I
e caeRem4.Crem_Contig0  4408677  29 +  4500979 I

a score=0.000000
s ce10.chrX             2174524 102 + 17718866 AACGTATTCCAAAAAATGCAAAACTGAAAACTGACAAAACTGTgagattttctgattttcaaaaaatcatataaagttttaaattagttgttaaattttttt
e caePb3.Scfld02_0      2916156 110 -  4147112 I
e caeJap4.Scaffold4951    74474 1612 +   152553 I
e cb4.chrX             13647746   0 - 21540570 C
e caeSp111.Scaffold629 33110380  17 + 33334924 I
e caeRem4.Crem_Contig0  4408677  29 +  4500979 I

a score=-342.000000
s ce10.chrX             2174626 93 + 17718866 tgcagtttttgtccattgtggagccacaggcatgtttttaaagcaattttccTTTAAAAAAATCCTCGCACGAAAGTATGACTTGTGTGCGAA
s caePb3.Scfld02_0      2916266 60 -  4147112 TGCCCTTTTAGTT---------GTTACATGAaggtttcagaaattattt--------------ccTCCCGCTTAATTATGGCC----------
i caePb3.Scfld02_0     I 110 C 0
e caeJap4.Scaffold4951    74474 1612 +   152553 I
e cb4.chrX             13647746  0 - 21540570 C
e caeSp111.Scaffold629 33110380 17 + 33334924 I
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=-2439.000000
s ce10.chrX             2174719 43 + 17718866 AATCAAGGCAA------------TGCCTGTCAACATAAT--TTTGGCCCACCATAAG
s caePb3.Scfld02_0      2916326 35 -  4147112 -ATC-------------------TATCTGTTTTACTAGt--attgctcaattttttc
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    76086 56 +   152553 aaTGAAAACAAGACTTTTCAACTTACACATTATCCCATTCATTTGCCCAACCTCTA-
i caeJap4.Scaffold4951 I 1612 C 0
e cb4.chrX             13647746  0 - 21540570 C
e caeSp111.Scaffold629 33110380 17 + 33334924 I
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=-633.000000
s ce10.chrX             2174762 8 + 17718866 AAAATAAG--
s caeSp111.Scaffold629 33110397 8 + 33334924 aaaatcag--
i caeSp111.Scaffold629 I 17 C 0
s caePb3.Scfld02_0      2916361 8 -  4147112 taaataat--
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    76142 8 +   152553 --AATGTCTA
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13647746 0 - 21540570 C
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=-2569.000000
s ce10.chrX             2174770 12 + 17718866 AAAATATATGTT
s cb4.chrX             13647746 10 - 21540570 --aaaatttgtc
i cb4.chrX             C 0 I 16
s caeSp111.Scaffold629 33110405  2 + 33334924 -aa---------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2916369 11 -  4147112 -aaGTGTTTGTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    76150  7 +   152553 AAAATAC-----
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4408677 29 +  4500979 I

a score=68496.000000
s ce10.chrX             2174782 171 + 17718866 G----------------------------CACTTACTGTGAATAAGTAATCAAATCGGGTCCCTCTACAATAATTTGATCAGGGCGTTCTGCGGAAGTAACATCACGACAAGAAATTACTCGAATTCCACACATCCATTTTCCCAACGTCTGTCCAACTCCGATTGGTCCAAATCC-TCGAGCCATTAACACCGCCTGAA
s cb4.chrX             13647772 171 - 21540570 T----------------------------AACTAACTGTTGCAATGAAATCACATTCGGTCCATGCACATCAATGTATCCATGAATTTCTGCTTCGGTAACATCGTGACAGGAGATGACACGAATGCCCATCAACCATTTTCCAGGTGTCTGTCCGACGCCGATGTAAAGGAATCC-GTGAGCCATGAAAATTCCCTGAA
i cb4.chrX             I 16 I 489
s caeRem4.Crem_Contig0  4408706 171 +  4500979 G----------------------------TACTTACTGCTGGAGAGAAATCAAGTTCGGACCTTGGACAATTATGTGACCGGGAATATCGGCGGCAAGGACATCGTGGCAAGAAATCACTCGTATTCCCAACATGAATTTTCCGGGTGTCTGTCCAATTCCTAT-TACACCAATCCTGTACGACATGAACACTGCCTGAA
i caeRem4.Crem_Contig0 I 29 I 1
s caeSp111.Scaffold629 33110407 170 + 33334924 -----------------------------aactcactgtCCCAAAGTGATAAGATTTGGTTCATGTGCAATAATGTGGCCAGGAATTTCACCAGCGCTGACATCTCTACAAGAAATTACACGGATTCCCATCATCGACTTCCCTGGCGTTTGTCCGACTCCAAAGCAGAAAACTCG-ATACGTCATGAAGAATGCCtgcg
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2916380 198 -  4147112 -ATTTCTGTGGCTTTAAAACTCTAGCCTCAACTCACTGTGGCAAAGTAAGAAGCTCTGGTTCCTGAACGATAATGTGGTTAGGAATTTCGGCAGATGTGACGTCTTTTACTGAAATGACTCGAATCCCCATCATATACTTTCCCGGTGTCTGTCCGATGCCAAAATTGAGAACCCG-CTGTGACATGAAGATTCCCTGAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    76157 168 +   152553 -----------------------------CACTTACTGTTTCCATGTGATTATATTTGGCCCTTCGACAGTGATGTGGTCCGGAGTGTTACCATGAGTGACTTCTCTACACGAAATCACACGAATTCCAAGGATCCACTTGCCGAGCGTCTGACCCTTTCCAATTGGTCCTATTCC-ATATGCCATAATCATTCCCTA--
i caeJap4.Scaffold4951 C 0 C 0

a score=-8870.000000
s ce10.chrX             2174953 36 + 17718866 TAGAAAAATTTCAATTGTT--TGAGTAATTTCTGGATG-------
s caeRem4.Crem_Contig0  4408878 33 +  4500979 AAGACGGATGTTTATTCTT-----CTTTCCTATCAATG-------
i caeRem4.Crem_Contig0 I 1 I 4
s caeSp111.Scaffold629 33110577 24 + 33334924 ------aaaa---agtttt-----tatacgtgtcaaaa-------
i caeSp111.Scaffold629 C 0 I 9
s caePb3.Scfld02_0      2916578 32 -  4147112 ------AATGATCAGTTTTAGTAATCTACTTCACAATT-------
i caePb3.Scfld02_0     C 0 I 8
s caeJap4.Scaffold4951    76325 41 +   152553 TAAAAAAGTAGTCAATAGT----AtgtattttgaaaaagttgatA
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13647943 489 - 21540570 I

a score=64483.000000
s ce10.chrX             2174989 132 + 17718866 CTCACTTCCACGAAACAGCAAAATACTTTACACACAACTTCAACTGGGAGAAGGTCTTGAGCAAGATTAATGAAGTTCATCACATCCTGATCATCATCCAAGCTTGCTCCGATTTGCTTTAGGTCACTATAA
s cb4.chrX             13648432 129 - 21540570 CCTACCTCAAAAACGCAGCAAATAACCTTGCAGATAATCTCGATTGGAAGAAGGTCCTGAGCTAGCCCAATAAACTGCATAACATCCTGCTCCTCATCGTAACCTCCTCCGTATTCATTGAGATCGCTG---
i cb4.chrX             I 489 C 0
s caeRem4.Crem_Contig0  4408915 129 +  4500979 CTCACTTCCAATATACAGCAAATAAATTTACACGCGATTTCCACTGGCAGAAGTTCTTGAGCAAGATTGATAACCTGCATCACATCTTGTTCATCATCCAGTGTCCCTCCCCAGGAAGACAAATCTCTG---
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33110610 132 + 33334924 agcaCCTCAAGAAGGCAACAAATGAATTTAGAAGCCATCTCCAACGGCAAAAGTTCCTGAGCTAAAATGATAATCTGTGTAACGTCCTGATCATTTTCCATAGACGCTCCATACGTTCCCAAATcactgaaa
i caeSp111.Scaffold629 I 9 I 32
s caePb3.Scfld02_0      2916618 132 -  4147112 CTCACCTCAATGATACAACACACAACTTTGCATGCCATTTCGAGTGGAAGAAGATCCTGAGCCAAGTTAATGAACTGCATAACGTCCTGGTCTTCCTCAAGAGATGCTCCATATGATGTCAAGTCACTGTAA
i caePb3.Scfld02_0     I 8 I 3
s caeJap4.Scaffold4951    76366 132 +   152553 CAAACCTCTAGAAAACAGCACAGCATTTTGCAAATAATCTCGACTGGTAGCAAATCCTGGGCAAGACCAATAAACTGCATCATGTCTTGATTGTCTTCGAGAGCTTGTCCAAGAGACTTCAAGTCACTAAAA
i caeJap4.Scaffold4951 C 0 C 0

a score=-6139.000000
s ce10.chrX             2175121 34 + 17718866 AAACAAGGT-TTGGTACGATATAATTGAATATTCT
s cb4.chrX             13648561 20 - 21540570 AAATAATTT------------TACTTGGATC---T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409044 33 +  4500979 AAACACTCTATTAGTTT--CATGCTTTAATCCTTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2916753 21 -  4147112 AATTATTCT--------------CATTAATACTTC
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold4951    76498 34 +   152553 TTGCATTAT-TCGCTATataatttttgtgtatttt
i caeJap4.Scaffold4951 C 0 I 2347
e caeSp111.Scaffold629 33110742 32 + 33334924 I

a score=-3618.000000
s ce10.chrX             2175155  3 + 17718866 CTT-----------------
s cb4.chrX             13648581 20 - 21540570 CGATAGTGTATGCTCAGCTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409077  5 +  4500979 CGAAA---------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2916774  3 -  4147112 CTG-----------------
i caePb3.Scfld02_0     C 0 I 7
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33110742 32 + 33334924 I

a score=19166.000000
s ce10.chrX             2175158 165 + 17718866 CTTACATGTGACCCAATTCCGAGAGTGTTCCAACTACAGCAAGTTTGAAGCTGAGAATAAAAACAAAATCTATCAATTCTGCCAGAAGACGTCTCAAGAAGCTTGCAGCTCTGAAA------------AGGAA----AATACGTTTTCAA-----------------AAATGTCTCAATAAACAACATACTCAAATTG
s cb4.chrX             13648601 187 - 21540570 CTTACACAATTCCAAACTCCGTGAGAGCTAGCAGCAAGCACAGCTTGAAGAACATAACAATTGAGAAGTCAACCACTTCGGCAAAGAATCGTCGGATGAAGCTGGCGGCTCTGAAATTGTCCAAAGTCAAGAT----TGTCCATCTTGACGTCGTTTCTTGTCATTAGAGC-------AAAATCACTCACTCAAATCG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409082 169 +  4500979 CTTACACAAGGTCGACTTCCACGAGCATTGCCAACACGAACAGTTTGAACATCatcacaaacaaaaaatcgagaacTTCAGCAAGAAATCGCCTCATGAAACTTGCTGCTCTGTAG------------AATAC----TGGTGGTTTTAAA----------CTCattaaaatgac---aaaaaagacTAACTCAAATTG
i caeRem4.Crem_Contig0 C 0 I 481
s caeSp111.Scaffold629 33110774 163 + 33334924 ctcacattagTTCCAAgtcgagaagaagagcaaCTAATCCTAACTTGATTGTaagaacgaaaagaaaatcgaCGACTTCCGCGAAGAATCTTCTCAAGAATCCAGctgctctgaaa------------aaagagacgaatTGATTTTAAG----------ACGAGCAGTAT-------------ACTTACTCAAATTG
i caeSp111.Scaffold629 I 32 C 0
s caePb3.Scfld02_0      2916784 127 -  4147112 CATACATGAGATCATGATCCAGAAGAAGTGCAATGATTCCAAGCTTGAGAATGAGTACAATGGCAAAATCAATGACTTCTGCAATGAATCGTCGCGTGAATCCCGcggctctgaaa------------attga----aattga-------------------------------------------------------
i caePb3.Scfld02_0     I 7 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=-2385.000000
s ce10.chrX             2175323 28 + 17718866 AACTGAATC------AACACGTGGTTGGGCTGGT
s cb4.chrX             13648788 31 - 21540570 ---GACGGTTCCAAGAACATGTGGTGGCGATGGT
i cb4.chrX             C 0 I 49
s caeSp111.Scaffold629 33110937 26 + 33334924 CATTGAATCTCCGACAAGATTTGATT--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2916911 11 -  4147112 ---------------aagatgTGTTT--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-3178.000000
s ce10.chrX             2175351 52 + 17718866 TGGAGAACTTCTACGTTAACGTTTTGTTGAAAAGTTTCGGCAGAAAAAGACC
s caeSp111.Scaffold629 33110963 48 + 33334924 ----GATTTCCTGCATAAGGGATCAATTGTGGAGCACCATCGGGAACTGTTG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2916922 29 -  4147112 ----GTTATTGTGT-----GGATGAAT--------------GTGATTTGAAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13648819 49 - 21540570 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-1157.000000
s ce10.chrX             2175403 24 + 17718866 TGCTCAA-ATGCTCCACC--TGAAATT-
s cb4.chrX             13648868 27 - 21540570 TGCGCAC-GAGTTCCACctataaaaacc
i cb4.chrX             I 49 C 0
s caeSp111.Scaffold629 33111011 24 + 33334924 CACGGAA-AActtccatc--tgaaatt-
i caeSp111.Scaffold629 C 0 I 213
s caePb3.Scfld02_0      2916951 26 -  4147112 AACAAAACAGGTTCCGGTGATGAAAT--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-10132.000000
s ce10.chrX             2175427 178 + 17718866 AAAA---TGTTTTAAAATCATGCTATTTTT--------TAGAA--TTGTTATTAAAGACGGGTtgcttatagcaccacaatgaccaaatatcataattcaaaaattcaaaaaaaaaattctaaacttttaatg-----atttCTATTaattgagcaattctaagttttttgaaatcgtcgatcaaaaaaacagttg---------
s cb4.chrX             13648895 138 - 21540570 aaaattgacTTGTATAAT-------TGTTTTGTGGAGTCAGAAGGTTTTTAGCA----------TTTTATA----TGCGAGCAGAGGTTAGCGTTTTTATACTTCTC------CGGATTTTG----------------GTATTTGCT--TTGTTC---------TTTTCGAACAATTTCT----GAAACGCAATTA---------
i cb4.chrX             C 0 I 81
s caePb3.Scfld02_0      2916977 171 -  4147112 --AA--GGCCCTTATAATAGAACAATTTCTGGCAAAACTAGAA--TTGTTGG-------------TTTATA--ATTCTGAATAGTGTGCATCACTCGTTCAACATta------cgaattttgaattcctagTGAAACTATTTTTGCT--ATGGCCCA-ACtgagtttttgttgattgcAT----TAAACTGGCTTAGAACAGTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-751.000000
s ce10.chrX             2175605 79 + 17718866 tcttttttttttaagttttactactatattcgatcattttggctctatccgagtggcttttaacagtttgcccattggc
s caePb3.Scfld02_0      2917148 35 -  4147112 TC-----------------------AGATTCAGTT---------------------CATACAAACGTTTGCTCGTtggt
i caePb3.Scfld02_0     C 0 I 22
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13649033 81 - 21540570 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=0.000000
s ce10.chrX             2175684 5 + 17718866 gcAAA
e caePb3.Scfld02_0      2917183 22 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13649033 81 - 21540570 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-8.000000
s ce10.chrX             2175689 21 + 17718866 AAAATAATGGGTTAACATCCT
s cb4.chrX             13649114 18 - 21540570 caaatATTGAGAAATCAT---
i cb4.chrX             I 81 C 0
e caePb3.Scfld02_0      2917183 22 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-1413.000000
s ce10.chrX             2175710 44 + 17718866 ATTGTT-TTTATTAATTGAGATTTGAACTAGGGGtggcaaatttg
s cb4.chrX             13649132 31 - 21540570 -------TGAACT--TTGTGACTTTCAGCTTAAACTGAAG-----
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2917205 45 -  4147112 ATTGCATTGAATTAATTGGAGGTTGCTGTTGAGGTGGTGGATATG
i caePb3.Scfld02_0     I 22 I 41
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=790.000000
s ce10.chrX             2175754 66 + 17718866 tttttcgacaaactcggcaaattgtcaaatttccggtttgccaatttgccggaatttttaattttc
s cb4.chrX             13649163 61 - 21540570 -----CATGAAACTCGAGAAATTTCGTCATTTatcgttctgaaatttttctgaacgTATGATATTT
i cb4.chrX             C 0 I 272
e caePb3.Scfld02_0      2917250 41 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=0.000000
s ce10.chrX             2175820 10 + 17718866 ggcaaattgc
e caePb3.Scfld02_0      2917250 41 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13649224 272 - 21540570 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-572.000000
s ce10.chrX             2175830 235 + 17718866 cgatatgccttttgccggacatcagaaatgtcggaaatgtttagaggggttttttaaaaggcggaaaattttaaacggatgctttttgaattttttccggttttctttaaatattctcatggattctgcttattttcaaaaatagatgtaggaacattcttaggatgcgtacaatattgccgattgaaattaaagttctgaatatttttcaataaaaaatgtgaaaaaccacaat
s caePb3.Scfld02_0      2917291 161 -  4147112 CGGTACACCTC--------CATCtgaaat--tggaa------------gttttttaa-------------------------tttttgaaa-----cctgcTGTTTTTGTATACTATC------TATGCTTCTCTCACAACTTTGACGCTA----ATTTCAGGGACGTG------ATTATCA---GAGATCACATTGActactctttttctttgaa---tgtgAGTTTCTACATT
i caePb3.Scfld02_0     I 41 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13649224 272 - 21540570 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-9513.000000
s ce10.chrX             2176065 182 + 17718866 ttaccaaaaat-----------tttcTATTTATGGTTTTTCCGAAAATTAAGAAGTGTCGAAAATTTTCG-AAAACTCCTGATTTAAACCTTGAAAAAAACATTTG-------------AAACTAATAGTAAGAATATTTTGATTT----------------------TATAA-ATTTTTATCATTTCAAAACA--------------ACTCACATATTGCATGGATTGATCTATCCGGCGTAA--------------
s cb4.chrX             13649496 203 - 21540570 TTACCAAAAAAtcgctgttttttttcaa--tagagCTTCAGTATGTTGCTATTA-----GAAACTGCTTCAAATGAACCAGATTTAGTGCCTAT------CATTTGCCTCATCGAATCGATCTTTCCATTCAATGTAGTctatttt----------------------ttgagtatttttcctatttttcaacaaacttACCCATTGGATTCCTCCATTTGCT-------TGTTGTTGCTGCAAT-------------
i cb4.chrX             I 272 I 27
s caePb3.Scfld02_0      2917452 220 -  4147112 ---GCAAGAAA-----------CTTCTA--TAGAGTTTCTCTCTACTTTTTTAAATCCCGAAACCTTCTC-AATCAACCACTACTGGGGCCTTT-----ACAAGTGTTGAATCAGTGCAAACCCTACCATCAAGGTGTTCTACCGTACAATAAGTGAATTTGATCGGGTGAAATGTTATTTTTGCTTTGAGTCCAGATT---------ATTCccacattgttt-------ttttttcttggaaatctTACCCAGGTAA
i caePb3.Scfld02_0     C 0 I 6
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I
e caeRem4.Crem_Contig0  4409251 481 +  4500979 I

a score=-4221.000000
s ce10.chrX             2176247 16 + 17718866 AGCAGCTTCTCGATTC-------------
s cb4.chrX             13649726 21 - 21540570 AGCAA----TTGTTGC----CGTTGCTGT
i cb4.chrX             I 27 C 0
s caeRem4.Crem_Contig0  4409732 11 +  4500979 AGCAG---------------CGTCCC---
i caeRem4.Crem_Contig0 I 481 C 0
s caePb3.Scfld02_0      2917678 25 -  4147112 AGCGGAGTCTTGGGGCCTCTCTTTC----
i caePb3.Scfld02_0     I 6 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111035 213 + 33334924 I

a score=16673.000000
s ce10.chrX             2176263 71 + 17718866 -------TGACGCCGCACTACTTTCAAATATTCTCGATGTGCATTGGCCAGGTTTTCCATCGATCCGTAGTCTTTTTC
s cb4.chrX             13649747 71 - 21540570 -------TGTTGCCGAACTTTTTCGAGATAAACTCGATGAGCATTCGCCCAGGCCTCCATTGAACCATAGTCCACAGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409743 70 +  4500979 --------GTCGTCGTACTTTCTCCAAATACATTCTGTGCGCGTCCGCAAAATTCTGCTGTGATCCGTAGTCTGTTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33111248 74 + 33334924 TG----ACGTTGTTTTACTTTAGCAACATATTCTCTGTGTGCCATTGCCAAACTATGCATTGTTCCATAATCCTTTTC
i caeSp111.Scaffold629 I 213 C 0
s caePb3.Scfld02_0      2917703 78 -  4147112 TGCCATACGTCGGCGCATCTTTGCAATGTATTTTCGATGTGCGTCGGCCAACGCTTGGGCCGATCCATAGTCCACTTC
i caePb3.Scfld02_0     C 0 I 13
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=-907.000000
s ce10.chrX             2176334 13 + 17718866 TTCACTCCGCTGA
s cb4.chrX             13649818 13 - 21540570 CACATCCGGCACC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409813 13 +  4500979 TATAGTCGTCAGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33111322 13 + 33334924 Gacattctcaatt
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2917781 13 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=-13913.000000
s ce10.chrX             2176347 108 + 17718866 CCGTACACTTCCTGGAAACGTCGCCTCGT-----TTCCAT-TATTTTTGAAGATGTCATCGTTCTGTAAAACAATAAAAATTGGAATAGAATT--GTAT----ATGTATTGCATGTTTTT----
s cb4.chrX             13649831  81 - 21540570 GCAAACGtctctcgaaaaattctcCGCGATC---GAGCATATCTTGTTTCGCCGTGTAGCATGCTGAA-------------------ATaata--attt----------------cttgtt---
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409826  98 +  4500979 CCATACTCTTCAATAAAACGCGCCCGGTTCC---TTCTGAATCTCGTTGCGTCGGTATTCATcctgaaaaacacgaa-------attacAATT--ATTT--------------TACTTGTTATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33111335 104 + 33334924 tcaaaaacttctttgAATCGTTTACGAGTTTCCATTGCTTGTGTTGCcagaatttttcttgatgtAAGCCA----------------ATAATCAGGTTCATCAATGTCTTccatatttct----
i caeSp111.Scaffold629 C 0 I 757
s caePb3.Scfld02_0      2917794  94 -  4147112 CCATACGTTTCGTGAAAACGTCGTCGtatttc--ttgcat-ttttgttAGTGGTCGGCTCATCCTGAAACA----------------Caaatc--gttt-----tatttttcacattttt----
i caePb3.Scfld02_0     I 13 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=-28326.000000
s ce10.chrX             2176455 378 + 17718866 TTTTAAATGAAACAGtaat-----------------tataaaaaattaaaaatataCAGTGCAGCCCAAAAAAGGTATATTCTTTTGGATGAATATAAGTCAGAAGCTGGAAATTATTTTCCACCAACAAAGGTAAAAGGAATACTTTTTTGGCCAGCACTGTATATGCAAAGCGTA----AAATCAATGCAGTGAGTGCGTGAGGATG---TGT-TCTGCGGACCTCGCAGTGAACATGCAGACAATACAT----------CATATTTTACGACACTTGGGAAAAGGGGACA------GTTGTGTGGAATATTCAGGGAATGCGTAATCTTATGTACACCAAAA--TATTA-----TAGTTGCATTCGAACAGAATC--GAAGCGTTGAAAAAATATTCGatttaaaaaatatt---------tattttgaaaaa-a
s cb4.chrX             13649912 243 - 21540570 -----ttttaaatgGTAATTTCTGAGAGAAACTATAGAAAATCGATCAAAAACGT---------GGCAAGAA-----------------------------------------------------AACGAGAACATAGGCGAC--------------------------GTCGCCCG---------------------------GACGA---CAC-TTTGCGGACTACGCGGTGTATGTGCACACAACGCGC----------AATACCCCACGACACTTGAT----GGAGACAGCAGCTGTCgaataaa--att---gaaatga-------------cACGAAAA------------------TATTAGAAAGAAGAC--GGAAATCCGCAAA------AATCTCAAAGAGTa-----------tgctccaaaaaa--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4409924 261 +  4500979 CTTCATTTTAAACACTAATGCTCAGG----------Gaagaacaaataaaaacat------------aaaaa-----------------------------------------------------gctaaaaaCCGAATCGAT--------------------------GAAACCTA---------------------------GGCAAACGTGT-ATTGCGGACCGAGAAGTGTACGCACACCTAAGACAC----------CACATCTGACGACACTTGGT----GTGCACA--------CAAAGAAACTATT---GGAATGGGT-------TGT-GTCAAAAA--CGCTG---------TGTACTAGAAAtgtgac-tgaaaatttgtgaa-atatGAATCACAAA-AGCAGTTCGTTATATTGTTCTGGAAAAA-
i caeRem4.Crem_Contig0 C 0 I 39
s caePb3.Scfld02_0      2917888 279 -  4147112 --------tggcCGGAAAT-----GG----------GGAAAAAGACTTAGAATAT---------CACATAAA-----------------------------------------------------TAAGGAGGGGAAATCAAT--------------------------GAGACGTATTCGTTCTCAATGTGTTTGCTGCAGCTGGCGA---AGTGTTTGCGGA-----GAGTGTACCACAACTTACGACAATGAACCTATGCATACACCACCACAGCTGA------GAAACA--------CAGAGAAACGATT------ATGAAT------ATGC-TACGAAAGAACACtgtgaaatgaatgaattggtGATTCAATCTTGAATTCTCCGAAGGCTTATCTTGCAAGaaaca-----------aattcgaaaaaa--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111439 757 + 33334924 I

a score=1056.000000
s ce10.chrX             2176833 26 + 17718866 aaatCATATGTAACAT---GAAGTGGATT
s cb4.chrX             13650155 29 - 21540570 aaataatggggGATTCGAGCAAGTGGTTT
i cb4.chrX             C 0 I 32
s caePb3.Scfld02_0      2918167 26 -  4147112 aggtcaGAGCAAATCC---TAAGTGGTTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33111439 757 + 33334924 I
e caeRem4.Crem_Contig0  4410185 39 +  4500979 I

a score=-791.000000
s ce10.chrX             2176859 18 + 17718866 GTC--AAGTGTACCCTCGAA
s caePb3.Scfld02_0      2918193 14 -  4147112 GTGTGAAGAGGGTC------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13650184 32 - 21540570 I
e caeSp111.Scaffold629 33111439 757 + 33334924 I
e caeRem4.Crem_Contig0  4410185 39 +  4500979 I

a score=0.000000
s ce10.chrX             2176877 3 + 17718866 CAT
e caePb3.Scfld02_0      2918207 0 -  4147112 C
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13650184 32 - 21540570 I
e caeSp111.Scaffold629 33111439 757 + 33334924 I
e caeRem4.Crem_Contig0  4410185 39 +  4500979 I

a score=-3445.000000
s ce10.chrX             2176880 17 + 17718866 ---------ATATCATAGAGAACAGA-
s caeRem4.Crem_Contig0  4410224 17 +  4500979 tttttgaaaaggtccCA----------
i caeRem4.Crem_Contig0 I 39 C 0
s caeSp111.Scaffold629 33112196 17 + 33334924 ---------ATATCATTTACCAGC-AA
i caeSp111.Scaffold629 I 757 C 0
s caePb3.Scfld02_0      2918207 18 -  4147112 ---------ATGTCATGAAGAACCGAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13650184 32 - 21540570 I

a score=58014.000000
s ce10.chrX             2176897 93 + 17718866 CCGATAATCC-GTACTGAACCCACTTGAATTGT-----AGGCTTAGCAGAAATAAGATCATCATGGGAACCTTGAAAATTGT-GGTCGATACCCTTCATA
s cb4.chrX             13650216 96 - 21540570 CCGATAATCCTTCATTGAACCCACTCAAGTGGTGGTGGGGGCTTAGTAGAAATAAGATCATCATGGGAACCTTGAAAATCCTCCAACGATACCCTT----
i cb4.chrX             I 32 C 0
s caeRem4.Crem_Contig0  4410241 93 +  4500979 TCGATAATCC-TCATTGAACCCACTTGAATGGT-----GGGCTTAGCAGAAATAAGATCGTCATGGGAACCTTGAAAATCGT-CAACGATACCATTCACA
i caeRem4.Crem_Contig0 C 0 I 476
s caeSp111.Scaffold629 33112213 93 + 33334924 CCGATAATCC-TCATTGAACCCACTCAAGTGGG-----AGGCTTAGCAGAAATAAGATCATCATGGGAACCTTGAGAATCGT-AGAAGACACCATTCAGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2918225 91 -  4147112 CCGATAATCC-TCATTGAACCCACTCAAATGGT-----GGGCTTAGCAGAAATAAGATCATCATGGGAACCTTGAAAATCTC-AACCGATAC--TCCATA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=-4635.000000
s ce10.chrX             2176990 22 + 17718866 CCA--CCTCGAAAGATTCATTGCA
s cb4.chrX             13650312 11 - 21540570 -----TCTCGATCACT--------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33112306 23 + 33334924 -GACAACTCGACGATTCTATTTCA
i caeSp111.Scaffold629 C 0 I 169
s caePb3.Scfld02_0      2918316  2 -  4147112 -TA---------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=-452.000000
s ce10.chrX             2177012 110 + 17718866 AAATATTCATTCTTTGTATGTAC---TCCATTTCACTTGGACCACATCTCGCAAGAACTT----------------TTTTCTTTGTTTTTGCTCATGAAT--CCTAAT------------AC-TTATTTGATTTTTGGGAAATG
s cb4.chrX             13650323 120 - 21540570 -AGTGTCCATTGTTCATATATAG---------------------AATTCGACCAGAATTTGACCAGTCATAATGA-TCTCTCGTTTTTTGACTAATTAGTGTTTTAATTGTAAAATTTCCGT-TGGTATGATTGTTTGAAGAGG
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2918318 135 -  4147112 -AATGTC----GGTCATACACAGTCTTccatttcactt---tcaaaattgatcaaaacttgaccaattgaaatgattttctcattttattagCAGTGATTA-TCAACTTTTACAACGTCCACGTGGTATTATTTTCGGGAGAAG
i caePb3.Scfld02_0     C 0 I 60
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=-863.000000
s ce10.chrX             2177122 55 + 17718866 TTATTTATTGGCATAAAACATGACAATTCAGAATCACACATTCCATTCAGTCAGC
s cb4.chrX             13650443 31 - 21540570 TGACCCATT----TGAAATAATGTGACTC--------------------GTTACT
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2918453 60 -  4147112 I
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=-28043.000000
s ce10.chrX             2177177 544 + 17718866  
s cb4.chrX             13650474 575 - 21540570  
i cb4.chrX             C 0 I 31
s caePb3.Scfld02_0      2918513 545 -  4147112  
i caePb3.Scfld02_0     I 60 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=220.000000
s ce10.chrX             2177721 34 + 17718866 GTAATCGGAATGGTCCATAACAAATTTTTATTAC
s caePb3.Scfld02_0      2919058 26 -  4147112 GAAATTGGAATG--------CATACTTTCCCAAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e cb4.chrX             13651049 31 - 21540570 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=-8423.000000
s ce10.chrX             2177755 160 + 17718866 GCCAAACCAAAAACACTT-GCATAACGATTTCTTGTTTT------CTCCTCATTTATTCAAATCACAACTTTGATTCTTTTGCTTCGGAGTATCATACATTCAAATTAATCAAGCACTAATTATCATCAG---------TGTCTATGCTGATATCTATATTAAACCGCAAAACCGT
s cb4.chrX             13651080 143 - 21540570 GCCAAACTGTACATACGTGGCTCAA------TTTGCATT------TTCC------ATT-------CAACCCGACCTCTCTCGACA-CAGATAACATTCAGTCAAATAAATCACATCCCTACCCTCctaaattaagaaaattcaTAACAT----TCCTCTCTA--CCG-AAAACCTC
i cb4.chrX             I 31 C 0
s caePb3.Scfld02_0      2919084 119 -  4147112 TCCAGAACTGAGATCCCTAGAATAG------ATTGAAATAAAGAGTTCC----------------CAAGTATACTTCCGTAGGCATTTAAAAAGATTTAG--AGAGAAGTTGAA-CCTTTCCGTC--------------TTTCCAATCT----TCTATTTTA--------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I
e caeRem4.Crem_Contig0  4410334 476 +  4500979 I

a score=-2719.000000
s ce10.chrX             2177915 14 + 17718866 TTTTTTCCCTTCCG---
s cb4.chrX             13651223 10 - 21540570 -------TCTTTTACAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4410810 15 +  4500979 --ttttttcttttattg
i caeRem4.Crem_Contig0 I 476 C 0
s caePb3.Scfld02_0      2919203  3 -  4147112 -----------TTG---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I
e caeSp111.Scaffold629 33112329 169 + 33334924 I

a score=-6294.000000
s ce10.chrX             2177929 249 + 17718866 --------TCCAATGTACATACAGACAATAGCCCGAGCGTA---ACTGATAAGGT---CATTCAACTTTC----------------AACAGCTGTGAGTGCAACGCATTTCTCTCTTTTTTGCCCATTTTTTTGGTGAACTTCCGA--------T----AT-AAATTC------------------AATTGATCTTTCTACTACATAGTTTCCGTTTTCCAACAATTACCAAGTTTTTGAA-AGATAGG-------------CCAAGTTGATTTAGTGTTGATCGTT----AGCGGAGAAACGAT-----------GCGCACAACGCTCCAAGAAGG--------------------TT-
s cb4.chrX             13651233 301 - 21540570 ATT--------GACATACAGACAAAGAGTTA---GTGTGTCGT-ACTGATAAGGC---CACTTAATTTCCCCGCCTTTGTCGCCCCAACATATGTAAGGGCAGCCTA--------TTTTTTGccctttcgaatt-----tttccgatACATGTTTTCGGATATAAATTTCCCAGCGACGCGCTCCAAATCGATCTT-----GATCTCATTAACC---------------AAGTTTTTCGAACAAATGCG---------GGATA-AGGTTGATTTAGTATTGTACGTAGTGCGGCGCGAAACGATGTCGGATTTTTATTGCGAAACTTTCTTAGAGGGGCCGATAAAAAAGGTGGGGTCT-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4410825 275 +  4500979 tttcatTGTTCAACATCCATACAGACGAATA---GTGGGCTGTCACTGATAAGGT---CATTGAattccattctctt-----cttcatcatctgtTAGTGCAATCTA--------TGTTTTGCCctttttca-------cttccga--------ttGCGAT-TAAATC------------------AATCAATCGT-----CATCTAATTTccttt------------aaaagttttcaaa-aagtgggaGGCTGGGAGGGTATAAGTTTATTTAGTGATGATTGTA----GGCGGAAAACAAAGTCGG-------TCGCAAAACTGTCTAGCATGG--CGGTGACCGAATTGAAGGCT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33112498 213 + 33334924 --------TCCAATGTACAAACAGACGAATG---GAATGCT---ACTGATAAGGT---CATTCGATTCCTTT---------------TCGCATGTAAGTGcaactta--------ttttttgtccTTTCCA--------CTTCCGA--------TCACTAT-CAAATC------------------GATTAATCGC-----TGTCTAGGTTcc----------------aattattgaaaa-tattaaa-------------agaATTAG-------------------------------TAATTATCATCAATATGTTGAAGCTTAATATCACGGGGTCTT-----AAATAATGGGT-
i caeSp111.Scaffold629 I 169 C 0
s caePb3.Scfld02_0      2919206 226 -  4147112 --------TCCAACGTACAGACAAAAGACT----GCCTGTT---ACTGATAAGGTCACCACTTAACTTCTTCACCAT---------ATCATCTGTAAGTGCAACTTA----------TTCTGCCCTTTTCA--------TTTCCGA--------TCACCGC-GAAATC------------------GATCAATCTT-----CGTCTAGattcc----------------aagtttttcgaa-aattagg-------------aTAAGTTGATT-----------GTA----GGCGGAGA--GAATTTTATTGCAAACTCTGAAGC-----ATCATGGGGCC--------GAGAATGGTTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    76532 2347 +   152553 I

a score=55694.000000
s ce10.chrX             2178178 125 + 17718866 T-------TGACGATGATTTAGATCACCG---AGAAGAGAATCTCGTGAGACCGACATT----ATATACGGACCGC------------TTCAAGGCCGATCAAG--TTGTGT----AGGCTGCGCGTGTTTGTTAATA---GTATCAGTAGGGTT--------------------TTCAC
s cb4.chrX             13651534 157 - 21540570 TTCCCCTCTTTTTGTGATTTAGATAATAT----AAAGACATTC------GACCGACATT----ATATACGGACCGCGAGTGCTTT-A-TTCAAGGCCGACCAAG--TTTCGttttgtgtat--gtgtgtgtatCAGTAGTCGTATTCGGACTG-TGTGTTGTCTTGTC--GTCCGTTCAC
i cb4.chrX             C 0 I 116
s caeRem4.Crem_Contig0  4411100 157 +  4500979 T-------TGATGATGATTTAGATcacacagaaaaagaaaatcgcCTGAGACCGACATT----ATATACGGACCGCGAGCGCCTA-GTTTCAAGGCCGATCAAG--TTGTGT----GGGAT--GTGTTTCTATCAGTA---GTATTCGCAAGGTTGGACAGTCGTGTCGTGTCCGTTCAG
i caeRem4.Crem_Contig0 C 0 I 10
s caeSp111.Scaffold629 33112711 142 + 33334924 T-------TGTCAATGATTGAGATCACCG----------AATCGTTTAAGACTGATATT----ATATACGGACCGCAAGTGTCTT-TGTTCAAGGCCGACCAAGGTGTGTGT----TGAAT--GTGTTTATATCAGTA---GTATTCACAAGGTTGGTCAGTC-------GTCCGTTCAG
i caeSp111.Scaffold629 C 0 I 10
s caePb3.Scfld02_0      2919432 155 -  4147112 T-------CATCGATGATTTAGATCgcag---aaaataaaatcacTTGAGACCGACATT----ATATACGGACCGTGAGTGCCTTCTCTTCAAGGCCGACCAAG--TTGTGT----TGAAT--GTGTTTGTATCAGTA---GTATTCGCAAGGTTGGACAGTCATGTCGTGTCCGTTCAG
i caePb3.Scfld02_0     C 0 I 10
s caeJap4.Scaffold4951    78879 108 +   152553 T-------TGGCCATAATTTAGAtcacaa----aatgaaaatcgcatgaGGCCGACATTATACATACACGGACCGTG-----------TTCAAGGCCGATCAAG----------------T--GTGTTTGTAGTAGAG---G----------------------------GGCCGTCCG-
i caeJap4.Scaffold4951 I 2347 C 0

a score=9534.000000
s ce10.chrX             2178303 132 + 17718866 ---------ACGACAGTAGCCA--AGACCGCCAAAGTTCTGATACGAGGGTG---AGAATTTGAGCCATAACTCCTCAATGAAAAATAGGTACCAAGAATGTTGGCGGGCTAGTACATAGTAGTTGTCGTAGTACCACTAGAGCGT-
s caeRem4.Crem_Contig0  4411267 105 +  4500979 ---------ACAACGGTAAAT-----GTCGT-----TTTTGGCGCGGTGGTGAG-AGAATGCAAGCTGAAATCTCGagagtaaaaagaa--aaaaagaatgg----gaGAAGAAAGGTTGAAGATGTAGTG----------------
i caeRem4.Crem_Contig0 I 10 C 0
s caeSp111.Scaffold629 33112863 109 + 33334924 ---------AAAACGGTAAACg--agaaagt-----ttttgatgCGTTGGTG---AGAATGCAAGCTAAAACTTTGagagtaaaaaga---aaaaagaatgcgAGCGAGAAAAGGAGGTGAAGACGTAGTG----------------
i caeSp111.Scaffold629 I 10 C 0
s caePb3.Scfld02_0      2919597  95 -  4147112 ---------ACAACGGTAAAC----GACATT-----TTTTGGCGCGTTGGCGAGAAGAATACAAGCTAAAATCTCGagagtagaaaaa------------------gaaaaaaagaggtgaaGATGTAGTG----------------
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold4951    78987 102 +   152553 TTCAGAAGAGAAACGACTGACATCAGTTACG-----TCGAGGCGCGAGGGTG---GGAATACAGGCTAAAACctcgagaagaagaaga------------------gaaagaaaa----gaaggcATCGTG---------------A
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13651691 116 - 21540570 I

a score=177375.000000
s ce10.chrX             2178435 378 + 17718866 GGGGCCCTTTCTTTGGCC----TGCG------CGACACCGACGAC--------GCATGAGAT-ATCTAGACAGCGTACGCATCAGAGTTGTAATGA---CGGTTGGGGTGGCCGTAAGATACGAGTGAT---------AGAGAAACA----------------CCTAAAGAGACGCGGGGAG-GAAACGACGCGA--------CAGTGATAGAGAG-----AGAG-----ACAATGATAAAGAGAGCACGATACGGTATGAGAAGAAAGAG-GACAGATATGGAAGTGAGAAAAG---AAAAGGAATTTT--------------------TTTCTGATTCGTTTTTCTTCTTCTCATCA-CATTTTTTTTCTACCCCACACGC--------ATTGTTTATTCATACTATCTATAC--AACAATTGACAGCCAA----------------CAAAAAAGAAAAGAATAGAAGACGTTACAGAGAATTGACAGTTAT-T
s cb4.chrX             13651807 429 - 21540570 gAGGTCCT---TTCGCCCACG-CACGCTAAAACGACGTTG-CTACCTCTGACGACGTCAGATAATCTAGACA-------CAGAAGAGTTGTAACGA---------GGGTGGTCGTAAGATGCAAGTGATTGCGAGGGGAGAGAGG-------------------CGACGATTACG-GCCAAA-GAGAAGACACGC----AACATTTTGATAGAGTG--------------ACTGTGATAAAGAGAGCACGATACGGTATGAGA---AAAGACGACAGATATGGAagtgagaaaagagaaaaggaatttttgtttctgcggtatgtttctgtttctgattttcgttt-ttctccccaccatc--acttttttcACCACACATACACATACGTATTGTTTATTCATACTTTCTGAGTGAAACAATTGATGAGAAATTGATGGGAGGAGTAGAAGAatatgatgaagaagaagacgttggagaaaattgacagttttt-
i cb4.chrX             I 116 I 802
s caeRem4.Crem_Contig0  4411372 360 +  4500979 GAGGTCCTTTATTCGCCTCCT-CGCG------CGAC-----CTAC--------GCATCAGAT-ATCTAGACAGCGCACGCATCAGAGTTGTAATGA---CGATTGGGGTGGTCGTAAGATACGAGTGAT---------AGAGAGA------------------CCGACGAAGACG-GT--AA-AACGAGGTAC----------TAGtgatagagagaaagaaaatacaaTACGGTGATAAAGAGAGCACGATACAGTATGAGAGGGAAGAAGGACAGATATGgaagtgagaaaag---aaaagaattttt--------------------tttctgattcgttttt-ttcttctcatca-c--ttttttttcacccCACACAC--------ATTGTTTATTCATACTATCTATGCGAAACaattgatg----------------------------------agaagaagacgttgcaGAAAATTGACAGTTTC--
i caeRem4.Crem_Contig0 C 0 I 29
s caeSp111.Scaffold629 33112972 370 + 33334924 GAGGTCCTTTCTTTACCCCTGTTGCG------CCAC-----CCAC--------GCATCAGAT-ATCTAGACAACGTACGCAACAGAGTTGTAATGA---CAATTGGGGTGGTCGTAAGATACGAGTGAT---------AGAGAGA------------------CCGACGAAAACG-GGGCAGTTAGAAGACGA----------CA--TATAGAAAA-----AGAC-------AGTGATAAAGAGAGCACGATACGGTATGAGAGGAGAGAG-GACAGATATGgaagtgagaaaag---aaaagaattttt--------------tttct-cttctgattcgtttttcttcttctcatca-c--ttttttttcacccCACACGC--------ATTGTTTATTCATACTATCTATGTGAAACAATTGATGAggaa-------------------aagacgaagaagaagaagacctTGCAGAAAATTGACAGTTTC--
i caeSp111.Scaffold629 C 0 I 245
s caePb3.Scfld02_0      2919692 357 -  4147112 GAGGTCCTTTCTCTACTCACCCCGCG------CGAC-----CAGC--------GCATCAGAT-ATCTAGACAAGGCACGCAACAGAGTTGTAATGA---CAATTGGGGTGGTCGTAAGATACGAGTGAT---------AGAGAGA------------------CCGACGAAGATG-GGAAAA-CAGACAACGA----------CAGTGATAGAAAG-----AGACACAATATAGTGATAAAGAGAGCACGATACGgtatgagaagaaagaatgacAGATATGGaagtgagaaaga---aaaagaattttt---------------------ttctgattcgtttttcttcttctcatca-c----ttttttcaccCCACACGC--------TTTGTTTATTCATACTATCTATGTGAAACAATTGATGAG---------------------------------AAAGAAGACGTTGCAGAAAATTGACAGTTTC--
i caePb3.Scfld02_0     C 0 I 28
s caeJap4.Scaffold4951    79089 296 +   152553 ----------------------------------------------------------AGAT-ATCTAGACATCGCGCACATCAGAGTTGTAATGACGACGATTAGGGTGGCCGTAAGATACGAGTGAT---------AGAGGGAGAGAAAAAGCGCATTGACGCGTCGGTGATA-GA--AT-cagaaaatgagaaagaaaCGGGACGATAGATTG--------------TCAGTGATAAAGAGAGCACGGTACAATAT-AGAGAAGACGGTGACAGATATGGAagtgagaaaag---aaaaaaattctt----------------------------------ttcttcttctcatca-ctttttttttcttgttaccACAC--------AATGTTTATTCATACTAACTATGCG----------------------------------------------------------TATAGTAAGTTGA---------
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2178813 17 + 17718866 TGTTGTGTATTTCTTAT
e caePb3.Scfld02_0      2920049 28 -  4147112 I
e caeJap4.Scaffold4951    79385  0 +   152553 C
e cb4.chrX             13652236 802 - 21540570 I
e caeSp111.Scaffold629 33113342 245 + 33334924 I
e caeRem4.Crem_Contig0  4411732 29 +  4500979 I

a score=-33788.000000
s ce10.chrX             2178830 164 + 17718866 GCC---------------AAGCGGTTGTGTAG---------------------ACTTGATTCAA---------------CTGGAA-----------------ATTG-ATGGTGACCGGAAGTGGT-----------CTGAAAACC---CTTATGTCACATGATTTTTTTTT------------TTTTGCAGTTTTA---------------------------------------ATTT--TGAT--------TTGTCTAAAATTAAATGCATAAGTTATGTACTTCAA--------------------------AAATT-----TTCA----------------CTTA--------TAATTA
s caeRem4.Crem_Contig0  4411761 257 +  4500979 GCCATTTCTTTCTACTGAATTGGCTTTTATAAGAATGTcatatgaaa------gtttgaaataaaagCTAGAGTG----TTGaaa----aaaaGGGTTTCTCATTGTATTGtgac----aaaagt-----------ttgaaaactcaGCACAAg----------ttctgtt------------ttttaaaatgttg--------gtCCCTTGAACTTTATATAAAATCGAATGACATTTTATAATACCAAAAGTCTTAAGAATATAAATACCCAAAT-----ATTCCCA--------------------------CAGtt--tttttCA------TGGAATATTTCTCA--------CAATTA
i caeRem4.Crem_Contig0 I 29 I 129
s caePb3.Scfld02_0      2920077 330 -  4147112 GCCGTTTTGTCTTTTTGGGAGGGTCTGTCTAA-----TCGGACACAATCAGTCGATTGagaagatagagagagagacatcTGAAATGGTCAAAAGATAACTGGTTAAACGGTAAT----GGTAATGAATTGTTtcgttgaaaact---ttcaag--------ttttctgttactttttatttgttttcaaattttgactgATTAGTTCCTTGACTT-----TAAAAccactcaaaattt--tcatac------tTTTGGGAAAGAGgacatttcatttttgcattCTGAACCGTCGGTTCGTATCTCTTTTTTATCAGTtggtttttcatctttctgaactttctcttaacaaaactcaacaa
i caePb3.Scfld02_0     I 28 I 13
s caeJap4.Scaffold4951    79385 124 +   152553 ----------------------------------------------------------AAACAG---------------TTAGAA----------------------------------GATGGT-----------TTGGAAATCAGTCGAAAA----------TTACATCGTTCTGGagga-ttttcaattttca----------------atct-------------------aatt--tgat--------tttagtgaaatgAAATACATACAT----------AA--------------------------AAAGC-----CCAA----------------CCgg--------aaatta
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13652236 802 - 21540570 I
e caeSp111.Scaffold629 33113342 245 + 33334924 I

a score=-5007.000000
s ce10.chrX             2178994 49 + 17718866 TACCTATACTGATACTTTATACATA-----TACCGAGTTATTGCA-------------------------------TCCAAAAAT
s caePb3.Scfld02_0      2920420 81 -  4147112 catttctgctTGTACTTCAAGCATAATTTGTACC----TATTGCAAATCCTAGTCATTAATTATATTTGTCATAACTCCAAAAAG
i caePb3.Scfld02_0     I 13 I 30
s caeJap4.Scaffold4951    79509  5 +   152553 ------------aactt--------------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13652236 802 - 21540570 I
e caeSp111.Scaffold629 33113342 245 + 33334924 I
e caeRem4.Crem_Contig0  4412018 129 +  4500979 I

a score=-5603.000000
s ce10.chrX             2179043 48 + 17718866 TTTTGACATT----GGCTCTCAATTAG--TTGGATGCATTGCATATATCATCCT
s caeRem4.Crem_Contig0  4412147 42 +  4500979 TTTTGACGTG----GG--CTCAATTAA--AAGAATTCATCATCG----CATCCT
i caeRem4.Crem_Contig0 I 129 I 1
s caePb3.Scfld02_0      2920531 49 -  4147112 ATTTGACGTTTGTCTG--CTCAATTAATGAAAAACACATCATGG---TCGGCCT
i caePb3.Scfld02_0     I 30 C 0
s caeJap4.Scaffold4951    79514 15 +   152553 -----------------tttcataTAA---------CTTCT-------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13652236 802 - 21540570 I
e caeSp111.Scaffold629 33113342 245 + 33334924 I

a score=15789.000000
s ce10.chrX             2179091 109 + 17718866 -----CAGTTCTACGCCATCTGACTGA------CAGACGGACTGCCCGTTGATTTATTT-CACCTCCTTTTTTTCTTCCGGATTGTTTTATAACTCTTTCA-TT--------------TTTGGAGAG-AATATTTAT
s caeRem4.Crem_Contig0  4412190  87 +  4500979 -----GGGACCCGCGTCATCTGACTGA------CAG----------CGTTGATTTATTT-CACTTCCGTCTTC-------GATTGTTTTAtaactccttcattt--------------tttggagaGTCG-------
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33113587  89 + 33334924 -----CAGGTCGACGTCATCTGACTGA------CTA----------TGTCGATTTATTTCCACTTCTCCCTCC-------GATTGTTTTAtaacttttcca-tt--------------tttagagaG-CGTAT----
i caeSp111.Scaffold629 I 245 C 0
s caePb3.Scfld02_0      2920580  93 -  4147112 ------AGATTCACGTCATCTGACTGACTTCGGCTA----------TGTTGATTTATTT-CACTTCCTTCTCC-------GATTGTTTTATAACTCCTTCA-TT--------------TTTAGAGAG-CGCAT----
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    79529  91 +   152553 CTTTTCTTATTTAAGAAAGCAAactga------tt-----------tatttatttattt-ctccTCCTTCTTG-------GAAT------TCACATTCACA-TTCGGCCCCAAATAGATTTAT--------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13652236 802 - 21540570 I

a score=102808.000000
s ce10.chrX             2179200 191 + 17718866 TCACTATACGTT----TTT----TT--TCTCTC-CTTC---AAT----------------TTTCATTTTC--AACCTTTTCTTATTTATCCTGCTGTCATACCAAAACCTTCATTTTTTTCT-----CTTTTTCATGTCAGG--------TTCTTCAGCCTT---CCAATTAGTGGTGGTTAATGTATTTAGACTCATTCTTCGCATACCATTCG--ATTGTGTTCCGAGTAAATCCTGTT
s cb4.chrX             13653038 181 - 21540570 TCACGTaacatt----tttccgttt--ttccttGATTCTCGAATAAAAA-----------ATCTCTTTTC--AACCT-----------------TGTCATTCCAA------------CCTCC-----TTTTTTCATGTCAGGtttacttcttcttcattctt---tCAATTAGTGTTGGTTAATGTATTTAGACTCATTCCTTGCATACCATTCG----TCTGTTCCGAGTAAATCCTGTT
i cb4.chrX             I 802 C 0
s caeRem4.Crem_Contig0  4412277 186 +  4500979 CCACTATAcgtt----ttcttgaat--tctctt-attc---aacctttc-----------atttcttttcctcacctttttccgttt----ttctgtcattctaa------------ctccc-----ttttttcaTGTCAGG--------TTCTTCATTCTT---CCAATTAGTGGCGGTTAATGTATTTAGACTCATTCTTCGCATACCATTCG--CTTGTGTTCCGAGTAAATCCTGTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33113676 190 + 33334924 TCACTTTACGTTattttttgcgattcccctctc-attc---aacctttc-----------ttctctcttc----atttttccttttt----tcctgtcataccaa------------cttcc-----ttttttcatgtcagg--------tttttcattctt---ccaaTTAGTGGTGGTTAATGTATTTAGACTCATTCTTTGCATACCATTCGTCTCTGTGTTCCGAGTAAATCCTGTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2920673 191 -  4147112 TCACTATACgct-tttttctcgatt--tctctc-attc---aacctttccaat-------tcttctcttc----atttttccttttt----ttatgtCATAccaa------------cttcc-----ttttttcatgtcAGG--------TTCTTCATTCTT---CCAATTAGTGGTGGTTAATGTATTTAGACTCATTCCTCGCATACCATCCGTCTCTGTGTTCCGAGTAAATCCTGTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    79620 153 +   152553 ----------------------------------------------------TCGGGGCCTCTTCTTTTC----CACTGTCCATCAT------------TACCAA------------CTTCCTCGCGTTTTTTCATGCAAGT--------TTCTCTGTTCTCTTACCAATTAGTGGTGGTTAATGTATTTGAACTCATTCCTCGCATACCATCCGTCATCGTGTTCTGAGAATATCCTGTT
i caeJap4.Scaffold4951 C 0 I 332

a score=13813.000000
s ce10.chrX             2179391 58 + 17718866 CAAAGACA------------TCACAGCAAACACAGAAAAAACAACAACG-ATGCATCTCATCTTAGGCGTC-------
s cb4.chrX             13653219 60 - 21540570 CGAAGACACTGAGAGAGGCGCCA--------CCaaaaaa---aCCACCGCATGCATCTCATTTCCGTCGTC-------
i cb4.chrX             C 0 I 516
s caeRem4.Crem_Contig0  4412463 42 +  4500979 CGAGgaca------------tca--------acaaaaaa--------cg-atgCATCTCATTTCTGTTGCC-------
i caeRem4.Crem_Contig0 C 0 I 7
s caeSp111.Scaffold629 33113866 51 + 33334924 CGAGGAca------------tca--------accaaaaa------aacg-aTGCATCTCATTTCCGTCGCCACGCGTC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2920864 51 -  4147112 CGAGGACa------------tca--------accaaaaa------aacg-aGGCATCTCATTTCCGACGAAATGCGTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    79773 332 +   152553 I

a score=-15877.000000
s ce10.chrX             2179449 166 + 17718866 T-GAAGTCTGGTTATCACACTGTTTTATTTGTTTTGTAGTTGATAATGAAAAATTGTAAATTGTTTGAGAGTTTAACAATGGAGTATTTAGTGGGAACTTAGTCTGACTACACGTTAAAAATT----------------------------ACTGAATATTTTAAAAAATCAAAACGTacataaagattca-----------aaat
s caeRem4.Crem_Contig0  4412512 182 +  4500979 T-CTACTTTAGTTATCAGACTCATTCA-ACGGTGtttaattg----ttgaaaattttgaataactGAGAATTGCCGCAAGgtattattaaa-----------aatttggagATCATGGAAGTCAAccgaaaatgttcaattcGGGTAGTAATTTGATTGCT----AATTACTAGTTGTCAACT---ATTCACAGTAATTGAAAAAC
i caeRem4.Crem_Contig0 I 7 C 0
s caeSp111.Scaffold629 33113917 135 + 33334924 T-CTACTCTAGTTATCATGCAAATCCA-CTGTTTTGT----------------ATATGGATTGATTAGAA------CATCTTTCTATTTAA-----------TAATAAtacattttggaaatt----------------------------cttaaatttt----acttcaaaaatatgCACA---ATTCgta-tagaaaataaat
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2920915  99 -  4147112 TCCTACTTCAGTTATCAACCTTAGTCG-ATGACTTCTGAT------------GGTAGGCataaattgaa---------------tattcaa------------attgtcACCCGTTGCAAAT-------------------------------------------------GAAGTGTG-------ATTTG-----------AAAT
i caePb3.Scfld02_0     C 0 I 40
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I

a score=478.000000
s ce10.chrX             2179615 31 + 17718866 g----tactaatttaacaaatttcgtgaaatatct
s caeRem4.Crem_Contig0  4412694 31 +  4500979 Gcaacttct--ttt--tgaaattcgtcCAATACCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114054 28 + 33334924 -----ttctaaTTT--CACATTTCAATAAATCTCT
i caeSp111.Scaffold629 I 2 I 103
e caePb3.Scfld02_0      2921014 40 -  4147112 I
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I

a score=153.000000
s ce10.chrX             2179646 22 + 17718866 tctcaaaaatatttcaaaaacc
s caeRem4.Crem_Contig0  4412725 22 +  4500979 TACCATGAAAGTcccaaaataa
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2921014 40 -  4147112 I
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I

a score=-2327.000000
s ce10.chrX             2179668 136 + 17718866 ttttttccaattttgaaaaaaatgg-----------------------tctatttttttaaagcaaaagtctcctattttggccatttttccgagccatcgcggtcagaagttgacgttttttgaCTGAAAT--TACTAAAATTGATGACTTATCTGTTTT
s caeRem4.Crem_Contig0  4412747 123 +  4500979 --tttttcaacgaGGAAACGGGAAAGTcataataaatcaaaaactacttcaattttt-----------------catttaaaaaaagtttc-----------------cgtTTTA--TCCATAAATCAGACTAATACTAAAATTTATGACCACTCTATTTT
i caeRem4.Crem_Contig0 C 0 I 19
s caePb3.Scfld02_0      2921054 105 -  4147112 TTGCTTGCAATTTGAGAATTGAGAG-----------------------Tcagttttt---------gag-----tattttgaaaatttttc------------gtgaGAATTTTA----CGTAGGTGTAATT--TCTCAGAAGTAAttatta-tcaatttt
i caePb3.Scfld02_0     I 40 C 0
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I

a score=417.000000
s ce10.chrX             2179804 8 + 17718866 GCATGTAC
s caePb3.Scfld02_0      2921159 8 -  4147112 ccaCGTAC
i caePb3.Scfld02_0     C 0 I 74
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I
e caeRem4.Crem_Contig0  4412870 19 +  4500979 I

a score=0.000000
s ce10.chrX             2179812 108 + 17718866 CCTAataataccaaaaactaagtaaagttcagaccgataatggaccaaaatttggagagtttagttaaaattaggccgttttttttcaaagttttgcaccgccgcaaa
e caePb3.Scfld02_0      2921167  74 -  4147112 I
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I
e caeRem4.Crem_Contig0  4412870  19 +  4500979 I

a score=-1758.000000
s ce10.chrX             2179920 381 + 17718866 catttgcaaaacttttttcgagaagttttttacgaaactcattTCTGCTCTAAATAAAAGTTTTCAAAATTTTTCAAAAAGTTTTTACTATAATATTTGGAATATTTAGCACTGACAATTTCAAAATCACTAATTGTTTTTTTTTTCAATTGCCAATTATTTTTGGTATTTAGTTGTTATACCCCAAAATATTTCAAATTATTTTTTTAAATCAAAATGTGCATTATTTTTGTAATCTAAAATTCGTAGTAATCATATTAAATCAAAAAGCTCAAAAAAATAACAGTATTAGAGAAAATATTTACGTGTTGGTTTTCATTTTTTGCCAACATTTTAGGGTATAGCTATTACACAGAGTAATCTATTATTTAAATTTAAAAC
s caePb3.Scfld02_0      2921241 231 -  4147112 catttg-----------------GGTTTTata---aattcgattttcttcaaagaaaTAATT--------------AAATATGATTATGATAATTTATCGAATG-------------ATATCAACATAAGGAAAT--------TATCAAGAACATGTTATCTTTG--------------------AGGATTTCTCA--------TTTTGGGTAATaatatcca--atttttctacTTCCAATT----------AACAATAAATCAAaaa-----------------------------------cgccttcttcttctcttttcatgtCCATTTTCTAGT--------------------CGTAATATAAAAATTTACGAC
i caePb3.Scfld02_0     I 74 I 36
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I
e caeRem4.Crem_Contig0  4412870  19 +  4500979 I

a score=0.000000
s ce10.chrX             2180301 53 + 17718866 AAAACCCAAAAATTGGAAAAGATTTCACTAGAAAAAATAATTAACTGAAAAAA
e caePb3.Scfld02_0      2921472 36 -  4147112 I
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeSp111.Scaffold629 33114082 103 + 33334924 I
e caeRem4.Crem_Contig0  4412870 19 +  4500979 I

a score=561.000000
s ce10.chrX             2180354 50 + 17718866 TCTAATAAA----ATTTATGTTTCGAAAATGACGAATTCGCAAGTTCTCGGAAA
s caeSp111.Scaffold629 33114185 51 + 33334924 tctaATAAATCTGActaatattc--aaatttacGACTATTCTA-TTCTCGGACT
i caeSp111.Scaffold629 I 103 C 0
e caePb3.Scfld02_0      2921472 36 -  4147112 I
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeRem4.Crem_Contig0  4412870 19 +  4500979 I

a score=-364.000000
s ce10.chrX             2180404  8 + 17718866 ----------TTTTAGAC
s caeSp111.Scaffold629 33114236 18 + 33334924 TTTTTCCCCACTTCAGCG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2921508  8 -  4147112 ----------TCTCATCG
i caePb3.Scfld02_0     I 36 C 0
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I
e caeRem4.Crem_Contig0  4412870 19 +  4500979 I

a score=14196.000000
s ce10.chrX             2180412 49 + 17718866 GGTTTCTACGAAAAACCATTGGAGACGATGTTTCG-AAGCGAGTCTCCCA
s caeRem4.Crem_Contig0  4412889 50 +  4500979 GGTCTCTACACGAAACCATTGGAAACCGTGTCTCGAAAGCCCGTTTCCAA
i caeRem4.Crem_Contig0 I 19 C 0
s caeSp111.Scaffold629 33114254 49 + 33334924 GGTTCCCAAGCAAAACCATTGGAAACAGTGTCTCC-TAGCAAGTCTCTCA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2921516 49 -  4147112 TGTTTCCTAGTGAAACCATTGGAAACAGTGTCCCG-AAGCTAGTCTTTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    79773 332 +   152553 I
e cb4.chrX             13653279 516 - 21540570 I

a score=8873.000000
s ce10.chrX             2180461 22 + 17718866 CGG-AAACTCGGACAC--TTTGCCC
s cb4.chrX             13653795 24 - 21540570 caa-aaactcggccatcgTTTCTTC
i cb4.chrX             I 516 C 0
s caeRem4.Crem_Contig0  4412939 22 +  4500979 CGG-AAACTCGGCCAC--TTTTCAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114303 22 + 33334924 TAG-AAACTCGGACAC--TTTTCAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2921565 24 -  4147112 CCGAAAACTCGGCCAC-ATTTTCAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    79773 332 +   152553 I

a score=60132.000000
s ce10.chrX             2180483 136 + 17718866 CGTTTGATATA-----TTACA-----AAATGCCTTTCTCGTAGGCGATCCGA----TGCAAACCG-----TTTCCGCTCGTTCATTGCC----------CCCCCCCCCACGCAACTTCCAT--TAT---TGCTT----------------TTGAGACCATTTCTTTCGTTTCTGCCGCTTTTT------GTT-
s cb4.chrX             13653819 146 - 21540570 CGTTTGATATATTATGTTACG-----AAATGCCGGTGTAGGAGATGATCCAAAG-ATGCAAACCGT----TTTCCACTCG-------------------CCCTTCAATTCGCAACTTTTATCACAT---CGCTT-------------AGATTgagatt-cttcttttttcttcgtttttcttttttttcgcc-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4412961 152 +  4500979 CGTTTGATATA-----TTACG-----AAATGCCTTTCTCGTAGGCGATCCGAAG-ATGCAAACCG-----TTTCCGCTCGTTCATTTTC--------TCCTCCTCCCATCGCAACTTCCAT--TAT---CGCTTT-------CTTAAGAATTGAGatc-cttctttctcttctgcCGCTCCTTTTT---GCA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114325 141 + 33334924 CGTTTGATATA-----TTACG-----AAATGCCTTTCTCGTAGGCGATCCGA---TTCGAAACCA-----TTTCCGCTCGTTCATT-------------CTTCCCCCCACGCAACCTCCATTATTTCTCTCCTT-------------AGATTGAGacc-cttctctcttttctgccGACTTTC------CCA-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2921589 137 -  4147112 CGTTTGATATA-----TTACG-----AAATGCCTTTCTCGTAGCCGATCCGA---TTCCAAACCA-----TTTCCGCtcgttcatt--------------ttcttcccacCCAACTTTCAATATCT---TTCTT-------------GGATTGAAacc-cttcttcattttctgccGCCTATC------CCa-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    80105 172 +   152553 CATTTGATATA-----TTATGAAACTAAATGCCCTTCCCGTATCCGATCCGACGCAAACAAACCGTTTTGTTTCCGCTTGTTCGTTTCGTCAATTCTTCCTTTCTCTCACGCAACTT------TAT---TTCATTGTCGGCCCCCGCAGATTAAGATC-cttcctttcttcctttctttcttt------tctt
i caeJap4.Scaffold4951 I 332 I 812

a score=-19036.000000
s ce10.chrX             2180619  89 + 17718866 GATATCCCTGTGC-----TTTC---ATCGTTTTCA-----------TTCCCAAAA----------CTTGTCAAATTGATGATT--------TTTCCTCAAAACTCC----AATCTT------------GTT--ATTG-TTG--GAAA
s cb4.chrX             13653965  95 - 21540570 cgcttcatttttcggcaacaatttattt-tcttcG----------CCTCCCAGCA-------------------------GCTTCTTCCAATTCCTCAGAATTGTG--AGAATTGG------------GTTTCATTT-TCGCAAAA-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4413113  93 +  4500979 GATATCCTTTTGC-----CCACTGA----CCCTCA----------ctccccaaaa---------aaaaatgaggata--GGCT--------TTTCCGAGAAGATTGGAAGAATTTT------------GCTTCATTC-TTG--AAA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114466 120 + 33334924 GATATCCTTCCAA-----CCACCGAGTcgtctccaaaaaattttttctccaaaaa-----gcTTTTTTGTGCAAGTG--GGcg--------tttctctgaaaattg----agtttatATCTTGCcatctcttcattctttg--aTA-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2921726 106 -  4147112 tttatcctttttt-----cttc-------tctcagaaaaaagccttcttccaaaattgatGGATCATTGTGCAAGTG--GGCG--------TCTCCCTTAAAATTG----AGTTTG------------TCAGAAGTCATCG--GGA-
i caePb3.Scfld02_0     C 0 I 33
e caeJap4.Scaffold4951    80277 812 +   152553 I

a score=129.000000
s ce10.chrX             2180708 5 + 17718866 TTGAG
s cb4.chrX             13654060 5 - 21540570 TTGAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4413206 5 +  4500979 TTGAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114586 2 + 33334924 TC---
i caeSp111.Scaffold629 C 0 I 5
e caePb3.Scfld02_0      2921832 33 -  4147112 I
e caeJap4.Scaffold4951    80277 812 +   152553 I

a score=-17599.000000
s ce10.chrX             2180713 156 + 17718866 ------------------------------------------TTAGGAGGCTTCAAAATATGATT-----TTGAG------CACCACAATTT--------------------TTTTTTGAAAGTTTTTCCTGTGTTCTTGTTCTCTTATCGGTT------TTCAAAATTCTT-------CATTTCCGTAG---TTTT---TTCTTTACACCC-----------TTGCACTTTGGTAACTATTTTGTCGCTTATCGTTGA
s cb4.chrX             13654065 226 - 21540570 TTTATTTTGTGGggagattttcaattttgatctcTCCACCCTCTTCCAATCTGACT--GACTCCTTGGTCTCCACAGCacccaaaacaattt-------ttttggtg-------tgttgtgtttgtttctggtattttttccatttt-tctccc------cGCACAAACCAT-------TCTTCTTATCA---TTTCCGCTTCTTTGTGGTTTCCTGGGTATTTTGAACGTTATCAAGTATTTCGTCGTTTCTTATCAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4413211 219 +  4500979 TTTGTCTATTTGGAAA---------------------------TATCAATCTGGTCAAAACTCCTT----TTCAT-GCACTGAAATGGATTTCTGGAGGttttgggggctactcttttcaatttgattctgatcttttcactttttc-ttgctcttttgttttataattctc-------ttttcttatcgcatttcctgtctttttattctGTCTTTGTGgtcttgaactttttaaagCATTTCGTCGCTTATCATTTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33114593 179 + 33334924 ------------------------------------------ATAAcagattttccaaaatttct-----ttaAT-------------GTTT-----GCGTGTTTTGCTCAATTCTTTCATTATGTTTCTGATCATCTTGCtatctt-tttaat------ttcatgATATTTTAGATTCACTCCTTATCG---TTTT---gtgtttgttttgtttctgtgA--TTGAACTTTATGAAATGCTCCGTTTCTTATCATTCA
i caeSp111.Scaffold629 I 5 C 0
s caePb3.Scfld02_0      2921865 142 -  4147112 ------------------------------------------CTACAAGATCTACTTAAACTATC-----TTAAT-------------GTTT--------TGTGTTCCTTCACTTTGTTGACATGTTTCTGATC-------------------T------TTCG---------------GCTCCttatcg---tttttcagtttttaatatCGTTTTGTGG--TTGAACATTTTGTAACATTTTGACGCTTATCA----
i caePb3.Scfld02_0     I 33 C 0
e caeJap4.Scaffold4951    80277 812 +   152553 I

a score=250493.000000
s ce10.chrX             2180869 702 + 17718866  
s cb4.chrX             13654291 996 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4413430 731 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 69
s caeSp111.Scaffold629 33114772 740 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2922007 775 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    81089 825 +   152553  
i caeJap4.Scaffold4951 I 812 I 56

a score=-2733.000000
s ce10.chrX             2181571 7 + 17718866 TGGAACA--
s cb4.chrX             13655287 2 - 21540570 -------TA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33115512 7 + 33334924 CAGATCA--
i caeSp111.Scaffold629 C 0 I 42
s caePb3.Scfld02_0      2922782 1 -  4147112 T--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914 56 +   152553 I
e caeRem4.Crem_Contig0  4414161 69 +  4500979 I

a score=-7542.000000
s ce10.chrX             2181578 169 + 17718866 GGGGTGGGTGGCAAAATGCCGATTTTAAAG----AGGGACTAGAGTTTGAAATAGCCTAAGATAATTTCAGAAAAAAACTATATTCCAGCTGCTGCAAAATCTCAGATTTTAGAAAAGTTTGTCAATTTTTTTTTTACATTTTGTCTGGCCAAAAAAACATTTTCGAAATTGT
s cb4.chrX             13655289  88 - 21540570 ----TGGGC-------------TTCTCGATTCTCAGGGA------------GTGG-CTA----TCCTTTAGA--------AAATTGCTGGAGGGGCA------------TGATTTATg-------actcttttt------------------------cctttttgagaTTGC
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2922783  82 -  4147112 ---Atgggt-------------ttttgga-----agaaatgatAGCTT---GTGGTCTA----TCCTTC-----------ACATTCTTTATAGGGCA------------TTAAAAGCG----------------------------------------CGTAACTGAACCTGT
i caePb3.Scfld02_0     C 0 I 92
e caeJap4.Scaffold4951    81914  56 +   152553 I
e caeSp111.Scaffold629 33115519  42 + 33334924 I
e caeRem4.Crem_Contig0  4414161  69 +  4500979 I

a score=-819.000000
s ce10.chrX             2181747 91 + 17718866 T-------TGAAAAGTCGCTTTGAAAAATTAGGTTTCTTTGAATCAATGTTAGTATATTTTAACAAAATGCTCACAAACTCTACTCATCCTTTGAATG
s cb4.chrX             13655377 78 - 21540570 TAAGGACTTGAGACA--GTTGTCAAGCGTTCGGTCGCTTTTATTT------------TCTTCACGTCATGCTCCAAAG------TCGTTCAGTGCCTG
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2922865 92 -  4147112 I
e caeJap4.Scaffold4951    81914 56 +   152553 I
e caeSp111.Scaffold629 33115519 42 + 33334924 I
e caeRem4.Crem_Contig0  4414161 69 +  4500979 I

a score=-9172.000000
s ce10.chrX             2181838 155 + 17718866 TTTTGAAAATCGGAAATTTCCGAATTATCCAATTGCAGAAAATTTTTGATTGATTGCCGCCCACGTTTGTTTTTGAAAAAAAATGTTG------AAAAAAAATACTATAATCATAATTTTCAATTTAAAGTTAGCAGTTTTTGCTGAC-------------TAAAATTTTTCAC--------
s cb4.chrX             13655455 128 - 21540570 TTTTGG-----------TT----AGTTTCCGCTTGCGC---------GTTTTGTTTAGGTATCGTGATTTACC-------AAATTTTCTCGGCTCGTCAAAA-ATATCGAATATAAATTGCTCATAAACATT-------TCTGCTAAG---------------AAACCCAATAATTTTTTGC
i cb4.chrX             C 0 I 109
s caePb3.Scfld02_0      2922957 137 -  4147112 ttttg------------------agaattgaattgGATAAAATAAAAGAGTAGTTGAACTTGAAATATGtccc-------aaaatttc------agttaaaatattttgatcatAGCAAACTGTTGAAAGTTCA-----CCTG-TAGGTCATATTGGCAGTCAAAATACAATAC--------
i caePb3.Scfld02_0     I 92 C 0
e caeJap4.Scaffold4951    81914  56 +   152553 I
e caeSp111.Scaffold629 33115519  42 + 33334924 I
e caeRem4.Crem_Contig0  4414161  69 +  4500979 I

a score=-1887.000000
s ce10.chrX             2181993 106 + 17718866 ATGTGCTGGAAATAAACTTTTTTCAATTTAAAGATGAAATAGCGCCAGTAAAAAATTGTTAAAAACTACACCCAAATTTACTACGTACAACTGAAAGGTTAAAAGT
s caePb3.Scfld02_0      2923094  39 -  4147112 ACATGCATGAACCA---------------AAATATGTAATAATGACCGTA-------------------------------CGCG---------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914  56 +   152553 I
e cb4.chrX             13655583 109 - 21540570 I
e caeSp111.Scaffold629 33115519  42 + 33334924 I
e caeRem4.Crem_Contig0  4414161  69 +  4500979 I

a score=-2390.000000
s ce10.chrX             2182099 65 + 17718866 -------GGCAATTTCGGAGTTTTTGCCACTTTTAAAAACTATTGCAATGTTGCATGTTGTACAATGTTTGA
s cb4.chrX             13655692 52 - 21540570 -------gaaaatatcaaaatttagtcaactgataaaa--tattg-----------gtggtattatgattga
i cb4.chrX             I 109 I 231
s caePb3.Scfld02_0      2923133 38 -  4147112 cgcttttggaa-----aaaattcagtttagTATCAATG--TTTTA---------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914 56 +   152553 I
e caeSp111.Scaffold629 33115519 42 + 33334924 I
e caeRem4.Crem_Contig0  4414161 69 +  4500979 I

a score=-2084.000000
s ce10.chrX             2182164 220 + 17718866 ATATAAGAAATGAAAACATAAATAGACCATGAAATttgaatttcaaaaaatggcaaaaactgtgtaattgacactttgaccgtcaataaaaagttttcaaaaaattattgaaaagtttcactgtgattttaggtcattttggaaccataggaaaaaatttaaatattttccctataggcaccactttacctctaaGCTGCTCATATTATGATATATCTTG
s caePb3.Scfld02_0      2923171 124 -  4147112 -----------------------GGTTTATGCAAT----ATTTtctaaatggaaaaaaac----------------------------aacactcttgaaaaattgtttggatGACTACTTCATGACTCCCG------------------------ATTTCCACACTCTTC------------CGTTTTCTCAA-----CTCACATTCCgggtcattttt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914  56 +   152553 I
e cb4.chrX             13655744 231 - 21540570 I
e caeSp111.Scaffold629 33115519  42 + 33334924 I
e caeRem4.Crem_Contig0  4414161  69 +  4500979 I

a score=-587.000000
s ce10.chrX             2182384 3 + 17718866 TTA
s caeRem4.Crem_Contig0  4414230 3 +  4500979 TTG
i caeRem4.Crem_Contig0 I 69 C 0
s caePb3.Scfld02_0      2923295 1 -  4147112 -t-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914 56 +   152553 I
e cb4.chrX             13655744 231 - 21540570 I
e caeSp111.Scaffold629 33115519 42 + 33334924 I

a score=600.000000
s ce10.chrX             2182387 1 + 17718866 C
s caeRem4.Crem_Contig0  4414233 1 +  4500979 C
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115561 1 + 33334924 C
i caeSp111.Scaffold629 I 42 C 0
s caePb3.Scfld02_0      2923296 1 -  4147112 c
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    81914 56 +   152553 I
e cb4.chrX             13655744 231 - 21540570 I

a score=8368.000000
s ce10.chrX             2182388 12 + 17718866 AGAATGCTACAT
s caeRem4.Crem_Contig0  4414234 12 +  4500979 AGAATGCCACAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115562 12 + 33334924 AGAACGCTACAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2923297 12 -  4147112 agaatgctaCGC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    81970 12 +   152553 agaaTGCTACTC
i caeJap4.Scaffold4951 I 56 C 0
e cb4.chrX             13655744 231 - 21540570 I

a score=156275.000000
s ce10.chrX             2182400 198 + 17718866 TGAACGATCGTCGCTCAATAATTTCTGGGCACGAAAGGGCGAGAAGCAACGATTCCAGGGCTACCAGTCTATTCTCATCGTCGATAGCCTCGTTCCGTCGTCCAATTTCTCATTTTTCGATTGACAACTCATGTTTCGACATTAATGATCCACCGACACAACGTTCGCTTATGTGTACACCGGTTGAAAAAGTAAG--------------------------CA
s cb4.chrX             13655975 209 - 21540570 TTCAGGATCGTCGCTCCATTATCTCCGGTCACGAAAGAGCCAGAAGCAACGATTCGAGAGCTACAAGCATCTTCTCCTCGTCCATCGCCTCTTTTCGCCGACCCATCTCCCATTTCTCAATCGACAATTCCTGTTTTGATATTGCCGACGCTCCAACCCAACGATCCTTGATGTGCACTCCGGTTGAAAAGGTTTGGTT-----------CTTCACTA----TA
i cb4.chrX             I 231 C 0
s caeRem4.Crem_Contig0  4414246 198 +  4500979 TACATGATCGACGTTCAATTATATCCGGTCACGAGAGAGCCCGAAGTAATGATTCAAGGTCTACTAGCCTGTTCTCATCTTCAATTGCTTCGTTCCGTCGAccgatttctcatttctccaTAGACAACTCTTGCTTTGATATCACTGATCCGCCGACTCAACGTTCCTTGATGTGTACACCAGTTGAAAAGGTTTG--------------------------TA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115574 201 + 33334924 TGAATGACAGACGCTCAATTATATCCGGTCATGAAAGAGCTCGAAGTAATGACTCACGGTCGACAAGTGTTTTCTCGTCCTCAATAGCATCTTTTCGTAGAccaatttcccatttttcaattgacaaTTCTTGTTTCGACATTAATGATGCACCGACCCAACGTTCTCTCATGTGCACTCCTGttgaaaaagtaagttt-----------------------ta
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2923309 224 -  4147112 TTAATGATAGACGTTCAATCATTTCCGGTCATGAAAGAGCCCGAAGTAACGACTCCAGATCTACAAGTGTCTTTTCGTCCTCAATTGCCTCATTTCGTCGCCCCATATCGCATTTCTCGATTGACAATTCTTGCTTTGACATTACGGATGCACCAACTCAACGATCCCTTATGTGCACTCcagttgaaaaagtgagtttgtgTTGAAACTCGTGATGAAAACTG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    81982 198 +   152553 TTCACGATCGTCGTTCCATTATATCAGGCCATGAAAGAGCACGTAGCAACGACTCAAGAGCCACCAGTCTGTTTTCTTCATCTATTGCTTCATTCCGCCGACCAATCTCCCACTTTTCAATTGACAACTCCTGTTTTGACATCACCGAGCCACCGACCCAACGTTCGCTAATGTGCACACCGATTGAGAAGGTATG--------------------------TA
i caeJap4.Scaffold4951 C 0 I 81

a score=-9788.000000
s ce10.chrX             2182598 14 + 17718866 ACTTTT---------------------T-----TTTATAT--
s cb4.chrX             13656184 18 - 21540570 ATTCTT---------------------G-AAACCCCCCAT--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4414444 12 +  4500979 CTTTTT---------------------G-------TCTAT--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115775 21 + 33334924 ttcgtc---------------------gtttcatttttatgt
i caeSp111.Scaffold629 C 0 I 26
s caePb3.Scfld02_0      2923533 42 -  4147112 ATCGTCTTCAACACTGTAACTTGTtctgttgaacttttttgg
i caePb3.Scfld02_0     C 0 I 11
e caeJap4.Scaffold4951    82180 81 +   152553 I

a score=-5663.000000
s ce10.chrX             2182612 24 + 17718866 ACAAGAAA---AGTTCATTCGTAAA--AC
s cb4.chrX             13656202 23 - 21540570 CAAAGTAGT--CGTTCAATTAGTGT----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4414456 16 +  4500979 TCAAGAAT---------GTTACAAA----
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2923586 27 -  4147112 TCACGCCCCAACGTTCAGTCGCAAGTG--
i caePb3.Scfld02_0     I 11 C 0
e caeJap4.Scaffold4951    82180 81 +   152553 I
e caeSp111.Scaffold629 33115796 26 + 33334924 I

a score=1264.000000
s ce10.chrX             2182636 6 + 17718866 AAATCT
s cb4.chrX             13656225 6 - 21540570 ATATGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4414472 6 +  4500979 GCATGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115822 6 + 33334924 ACATCT
i caeSp111.Scaffold629 I 26 C 0
s caePb3.Scfld02_0      2923613 6 -  4147112 TAATTT
i caePb3.Scfld02_0     C 0 I 487
e caeJap4.Scaffold4951    82180 81 +   152553 I

a score=-10690.000000
s ce10.chrX             2182642 61 + 17718866 -----------------CAAAAATGGTTGGCACCACTAACAGATTTTCCAGCTGTCAAGGCTCTGGGCAGATGCGTTG
s cb4.chrX             13656231 53 - 21540570 CGGAAGGAGCTTGGGCACAAAAAAGG-------CATTTAT---TTCTGAGGGGAGCGAGTGGC---------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4414478 23 +  4500979 CATGTTGAATTTTGTAACatgaa-------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33115828 41 + 33334924 ------------TAGAAAAGACAAGG-------CACAACC---TTGTTGAGTTGTCAGGTGTC---------------
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2923619 487 -  4147112 I
e caeJap4.Scaffold4951    82180 81 +   152553 I

a score=-46648.000000
s ce10.chrX             2182703 174 + 17718866 AAAAACGTTTCAATGTTTCATGAA--AATTGTTCTTGTGTATTTGCAAAGTTAGTTCACATTCTGCTAAAATGATATG---AACTA-GAATGTTTCTAGT---------------TCATATTGCTAAAAGTTGGCTACGACTTTTA-----ATA-GTTACTCAATAATTTATTCAAGTAATTTCTTATAGAGAACTGCCAA
s cb4.chrX             13656284 134 - 21540570 ---AGCATTAAGATTTGTCGAGAAAAGACGTGTATCCCATCTTTGCCCAGCTTCTCCTCCT--------------------GGCGCTAGATGTTCTTCAAATGCC----------TCATTTTACGAGAAGAGGTC----ATTTTTC-GACCAGA-GCTCttt-------ttttCG-------TCCTA--------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4414501 135 +  4500979 ------atcataatttttcaaaaa------------------------gatgtGTATTCCT--------------------AGAAA-AGACATTTGTGAAATGTTCAGGTCAGTGTCAGTTTGC--TCAGCTGCC----ACTTCTCAGAGTAGACGTTCTTCAAATGCATTTTCG-------TCTTAGAAAGAG--GTCAA
i caeRem4.Crem_Contig0 C 0 I 157
s caeSp111.Scaffold629 33115869 129 + 33334924 ---ACCCCAGATGTTCTTCAAATG----------TcttagttttgaagaaactacTCTATT-----CAATATGATATA---AAAAGTGACCGTTGCGCGTATTCC----------ACGGTTTGCTCCGGGTCATC----ACATTGA-AACTATAAACGCCCCATA------------------------------------
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    82261 117 +   152553 ---------AGAATCGTTCTCGAC------------GTGCCATGCAAAAAATCTTGCTTAT-----TCATATGATACATATATGTATGCATATTCTTTCG-TCCG----------TCGTATTGCTACAGAATGTT----TATTTTG-AAGAAGC-GTGGG-----------------------------------------
i caeJap4.Scaffold4951 I 81 C 0
e caePb3.Scfld02_0      2923619 487 -  4147112 I

a score=-1218.000000
s ce10.chrX             2182877 11 + 17718866 AATTGATGAAA
s cb4.chrX             13656418 10 - 21540570 AATTGA-GAAG
i cb4.chrX             C 0 I 115
s caeSp111.Scaffold629 33115998 10 + 33334924 AActca-gaaa
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    82378  2 +   152553 --------Aa-
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2923619 487 -  4147112 I
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=-2656.000000
s ce10.chrX             2182888 65 + 17718866 ACATCATGGTTGAACTTTTTAAAATCAAAGGTAAAACGGAATCATCACTCACTTTTCACAAAAGT
s caeSp111.Scaffold629 33116008 21 + 33334924 atat---------atttctt-----------------------------cCCTTCTTA------T
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    82380 38 +   152553 -------agctgtttttttt--------------------attattatctACATTTCAAAAACGT
i caeJap4.Scaffold4951 C 0 I 58
e caePb3.Scfld02_0      2923619 487 -  4147112 I
e cb4.chrX             13656428 115 - 21540570 I
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=-1130.000000
s ce10.chrX             2182953 72 + 17718866 ATCATAAAATTGATGCCCAAGTACATTAAAAAATCTCAACAACTTGCCTTACTCCACTGTTAAAAAAACAGA
s caeSp111.Scaffold629 33116029 35 + 33334924 ACCATAAAA-----------------------GTTTCTCCGCTCTTCCGcatctctct--------------
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2923619 487 -  4147112 I
e caeJap4.Scaffold4951    82418 58 +   152553 I
e cb4.chrX             13656428 115 - 21540570 I
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=69.000000
s ce10.chrX             2183025 2 + 17718866 GC
s caeSp111.Scaffold629 33116064 1 + 33334924 -t
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    82476 2 +   152553 GT
i caeJap4.Scaffold4951 I 58 C 0
e caePb3.Scfld02_0      2923619 487 -  4147112 I
e cb4.chrX             13656428 115 - 21540570 I
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=779.000000
s ce10.chrX             2183027 3 + 17718866 TTC
s caeSp111.Scaffold629 33116065 3 + 33334924 ttc
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2924106 3 -  4147112 TTT
i caePb3.Scfld02_0     I 487 C 0
s caeJap4.Scaffold4951    82478 3 +   152553 TTA
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13656428 115 - 21540570 I
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=-8012.000000
s ce10.chrX             2183030 36 + 17718866 TATCA---------ATAGTTTTGTTAACCAAGAAAATTACAATTT---------------
s cb4.chrX             13656543 24 - 21540570 TATTC---------ACAACTTCCtca------------atcattt---------------
i cb4.chrX             I 115 I 1
s caeSp111.Scaffold629 33116068 23 + 33334924 -cgtc---------aatttcttttga------------aaacttt---------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2924109 32 -  4147112 -CTTCTctaccaaaaaatcattttta------------acaCTTT---------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    82481 36 +   152553 ------------TAACATTTGTTTCA------------ACAACTCACACCGACTAGCACA
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4414636 157 +  4500979 I

a score=182395.000000
s ce10.chrX             2183066 303 + 17718866 TTTTGCAGATGTTCGTCAAGAATTCAAGATCTGCTCCCGAGATGCGGGTTCATGAAACCAAAATCCAACCATTTCTACCTTCGCCATCACCATCGAATGATGCGACAACAACAACTAGTGATGTAACCGCA----CAA-TCTTCAATTTAACATTTAAAAAATGTTTTTTTTTCAGCCCAGCGTCTCATCAGAAATTTCCATGGAGCAACCCATCCAGCCTATTGTTAGTAACTTGAAGCTTCGTTTGAGTGAAGGTTTATCCGAAACTGTATCACCAGCAGCATCGCCGATAGTAAAAACTAAGGTA
s cb4.chrX             13656568 305 - 21540570 cttttcagctatttgtgAAAAACTCTCGTTCTGCACCTGAGATGCGTGTAAATGATACCAAGACTAATCCATTCCTGCCATCACCTTCTCCATCAAACGATGCAACAACAACGACTAGCGATGTTTGTGATCAGAAAG-GATTTGttacaaaaatataaaaatgtttattttttagcCCAGCGTCTCTTCCGAACTGTCCGTCGAGCAACCTACACAACCATCTGTAGTCAACTTGAGACTCCGTTTGAGCGAGGGATTGACTGAGACGGTTTCTCCAGTTTCATCTCCAGTTATGCAGTCAAAGG--
i cb4.chrX             I 1 I 17
s caeRem4.Crem_Contig0  4414793 301 +  4500979 tatttcaGATGTTCGTCAAAAACTCTCGCTCAGCACCAGAAATGCGGGTTCATGAAACCAAAATTCATCCGTTCCTACCATCACCTTCTCCATCCAATGATGCCACAACAACGACCAGTGATG-TTGTGAT----ATG-AATTCAATACAAATA-ATGgatatgtttttgtttcagccGAGCGTTTCATCCGAGTTGTCTATGGAACAACCACCTCAACCAGCTGTAGCTAACTTGAAACTTCGTTTGAGTGAAGGATTGGCTGAAACCGCTTCTCCAGTGGCATCTCCAATTGTGAAACCAAAggtt
i caeRem4.Crem_Contig0 I 157 I 8
s caeSp111.Scaffold629 33116091 297 + 33334924 t-----agaTGTTCGTCAAAAACTCGCGATCTGCACCGGAAATGCGAGTCCACGAAACGAAAATGCATCCGTTCCTACCATCACCATCTCCATCCAATGATGCGACAACAACGACCAGTGATGTTGTTACA----AAATAtggaaatacaaaa--aaaacaatattttatttttagccCAGTGTTTCATCCGAATTGTCGGTTGAGCAGCCAGTACAACCTGCTGTAGCAAACTTGAAACTTCGGTTGAATGAAGGATTGATGGAAACCGTATCCCCAGTTGCTTCTCCAGTGGTTAAACCGAAGGTA
i caeSp111.Scaffold629 C 0 I 33
s caePb3.Scfld02_0      2924141 301 -  4147112 TCTTCCAGATGTTCGTCAAAAACTCGCGCTCAGCCCCGGAAATGCGGGTCAATGAGACCAGAATACATCCATTCCTACCATCACCATCTCCATCGAATGACGCAACTACAACCACCAGCGATGTTTGTGGA----GAA-ATCTAAATACAAAA--TCCAcgatgttttattttcagccaagtgTTTCTTCTGAATTGTCCGTAGAGCAAGTACCACACACAGTTGTTGCCAACTTGAGACTAAGATTGAATGAAGGGTTAACTGAGACTGTATCTCCAGTCTCTTCACCAGTTGCAAAACCAAAggtt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    82517 300 +   152553 TTTTGCAGATGTTCGTCAAAAACTCTCGCTCCGCCCCTGAAATGCGTGTTCACGAGACCAAAATCAGCCCGTTTCTACCATCTCCATCGTCTTCCAACGACGTCACTACAACTACCAGCGAAGTAAGAAAA----TGA-ACCTAGACAGCTCATCGTAACAA---TTCTGTTGCAGCCTAGTGTATCTTCTGAAATATCGGCCGACCAATATCCAAGTCCTGTCGTTATGAACCTAAAACTCCGACTCAACGAAGGACTGACAGAAACAGCGTCACCTGTGTCTTCACCGTTACCCAAACCAAAGGTT
i caeJap4.Scaffold4951 C 0 C 0

a score=-11223.000000
s ce10.chrX             2183369 38 + 17718866 ----CGGAGTATTATAGAACTTATAGTGAACTCAAA---------------TAAAAT
s cb4.chrX             13656890 23 - 21540570 ----AGACctaatttgatttt---------ctgaag---------------------
i cb4.chrX             I 17 C 0
s caeRem4.Crem_Contig0  4415102 31 +  4500979 ----aattttgtttttatatttat-gaAACCTGAAA---------------------
i caeRem4.Crem_Contig0 I 8 C 0
s caePb3.Scfld02_0      2924442 36 -  4147112 ----agttttgtttttgaa-----------ccgaagttttttcatataaat------
i caePb3.Scfld02_0     C 0 I 6
s caeJap4.Scaffold4951    82817 46 +   152553 TTGCAGATTTACAATTAGACCAACAG----ctgaaaattatgcaaaaaat-------
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33116388 33 + 33334924 I

a score=56437.000000
s ce10.chrX             2183407 96 + 17718866 ---GTCTTTCAGAGCCGGAAAGAG-AAGAAAACAAATCAGCAAATGTTGAAAGGGTCTGCTAGTTCCCCCAATATGAATTCTCAAAATTTGATAATCAAC
s cb4.chrX             13656913 97 - 21540570 ---ctTATAGGCTGccaagaagaacaaaaacgaaaatcagCAGCTGCTCAAGAACTCGGCCAGCTCGCCAAATATGAATTCGACAAATCTCGTGGTCAAC
i cb4.chrX             C 0 I 630
s caeRem4.Crem_Contig0  4415133 96 +  4500979 ---CTAATTCAGAgccgaaaagaa-aagaaaaccaatCAACAAATGCTCAAAGGGTCGGCCAGTTCTCCCAACatgaattcacaaaatttggtTGTGAAT
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold629 33116421 96 + 33334924 ---gttttttagagccggaaggaa-aagaaaacaaatcagCAAATGCTCAAAGGATCGGCAAGCTCTCCAAACAtgaattctcaaaacttAATTGTCAAT
i caeSp111.Scaffold629 I 33 I 3
s caePb3.Scfld02_0      2924484 96 -  4147112 ---TGGTTTCAGAGTCGCAAGGAG-AAAAAGACCAATCAGAAAATGCTCAAAGGATCCGCGAGTTCACCAAATATGAACGCGGAAAATTTGGTGGTGAAC
i caePb3.Scfld02_0     I 6 I 3
s caeJap4.Scaffold4951    82863 98 +   152553 gcaattttgcAGAATCGCAAAGAA-GCAAAAAGTAATAAACAACAGTTGAAAGCATCTGCCAGCTCCCCAAATATGAATTCGCAAATTGTAA-AATCCAC
i caeJap4.Scaffold4951 C 0 C 0

a score=-286.000000
s ce10.chrX             2183503 4 + 17718866 CGGA-
s caeRem4.Crem_Contig0  4415232 4 +  4500979 ATGA-
i caeRem4.Crem_Contig0 I 3 C 0
s caeSp111.Scaffold629 33116520 4 + 33334924 ATGA-
i caeSp111.Scaffold629 I 3 C 0
s caePb3.Scfld02_0      2924583 4 -  4147112 ATGA-
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold4951    82961 4 +   152553 -CGAA
i caeJap4.Scaffold4951 C 0 I 620
e cb4.chrX             13657010 630 - 21540570 I

a score=10795.000000
s ce10.chrX             2183507 319 + 17718866 AAACCACCGAGGTAGGG---TT----------TTCGC----------------ATCAG----AACCGTAAATCAGAATCAATATTTTTC-GAAATACAAATTTTATACGCTCCCAACTAC-----------AACAATTTGTAATTCGTTTTTTGCTAGTTCTAG--AGAGATGGGGGGGGGGGGGTTTGA---------------TTTATACTCCTCAAGACGTACTCCACAAGTCACCAAT--ATT-CAACATTCAAC---ATATATTCTAAATGTCTAATTTTGAAAATCATTTCATCTTTCCCAT-----------------GACTT--ATTATTCCGACT------CGTCTAGTATTGAAAGTTGTGATACTTTTGAATTTTCGGATGATTCGGTTTTTGAAGTATGC
s caeRem4.Crem_Contig0  4415236 318 +  4500979 AACCAGTAGATGTATGTTTGTATTGTTTGTTATTCGCTTTTT-----GTTTT-GCCAGAACTGACagtaaatcagaaa-aaagctgttg-aaaacaagaatttt---gtCTTCcaaacac-----------aaatttttg---------------tagttctgGTCAGAGCTTGACGGAAGAAATTTTGACGATCGAAGAGA---TTTAG--------AGTCGCACtttttggtct--------att---tgattcaat---ctct--ttttactgtctgtt-----------ttttagtgctaccga-----------------ctttt--tttgttattctctaATAATGTCTGACACTGAAAGCGTTGACACATACGTTTTTTCCGAGGACTCTGTCTTTGAGGTATTC
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold629 33116524 332 + 33334924 GACCAACAGATGTATGT---TTTCTT------TGTACTTAATCTCAAGTCTA-GTCAATAGAAACCGTAAGTCAGAAG-ATTCTGTTTG-GATGCCCATTTTTTATAGTCTTCCAAACAC-----------AATAAATTG---------------TGGTAAAAGCGAAAACTGGGAGGAGAAAATCTCAATGGCGGCGCGCAATTTTTAT--------AGTCGCACTCCTCAATTTCCAGAGAAATTCCTTTATTCGTT---CTCTG-TTTCATTATTACATA---------ATATTTTCTCTATCAA-----------------CACCT--CTTCTCATTGAT--ATTATGTCTGACACCGAAAGTTGtgaaactttcgaattttctcagGATTCGGTGTTTGAGGTATGC
i caeSp111.Scaffold629 C 0 I 229
s caePb3.Scfld02_0      2924587 366 -  4147112 AACCAACGGATGTATGT---TATTTTTTATCGTTTGTTTTCTCTAGAGTCTATGTCTAGTCAGACCGTAAATCAGAAG-agtctgttttcgaaaatcgaattttggagtctttcaaacacaaaaaatatgaaagaaattG---------------TGGTTTTAAGCAGAACTGGgagga-aaaatctgaatagaGGGACTCAA--TTTAT--------AGTCGCACTCCTCGatttctagat--atttccttattcctttcattctg-tttcattcttttctt---------ttcttattttccgcaaactgaaaattcattcttcattttgcttttcaCTGGC-AACCATGTCAGATTCTGAAGAAAGTGAA---TTCGCATTTTCTGAAGACTCGGTTTTTGAGGTGAGT
i caePb3.Scfld02_0     C 0 I 12
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I

a score=-4277.000000
s ce10.chrX             2183826  63 + 17718866 CGAGCCTAAGTTGATGTA-GTTTTTTTTTTGACACGTTTTTTTTACACGAAAATTACCACTTTT--------------------------------------------------------------
s caeRem4.Crem_Contig0  4415560 109 +  4500979 ------TGGTCTTATGGG-GCATTGATGTAG----------TTTGGAACGGAAATACAATTCTTTTTTATCCGAATAGAGCGAATGctaagaaaacgaaaagaaaaaacaaccaATTTCCGCTTCG
i caeRem4.Crem_Contig0 I 6 C 0
s caePb3.Scfld02_0      2924965  54 -  4147112 GAAACCTTAGTTGATGAACGCGCCATTGTAG----------TTTACACCGGAAATGAGATGTTT--------------------------------------------------------------
i caePb3.Scfld02_0     I 12 I 125
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33116856 229 + 33334924 I

a score=-263.000000
s ce10.chrX             2183889 88 + 17718866 AA-----------TTGCGTCTTGCACCCTCAAAACGCATTATTTCCGTCACATTAATGGTGACACATCTGGGCTTCTCAAAAAAATTA--TTGATGGAGTT
s caeRem4.Crem_Contig0  4415669 88 +  4500979 AAAACATTTTACATTGCCTCCTAGCACCCCAAAATGCATCTTT------------ATGGATTC-CATTTGATCATCCGAAATCATTCGATTTAGCGGGGGT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2925019 125 -  4147112 I
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33116856 229 + 33334924 I

a score=-2552.000000
s ce10.chrX             2183977 76 + 17718866 AAAGAACAATTTGATATTTCATAAATGTAAAAACAGAGTTGAGTACAATTTTGAAA----ATCTTCAAACAACTATTTAG
s caeRem4.Crem_Contig0  4415757 61 +  4500979 ---GGATGTTATGAGATGTCAC-------CAAATcccattgaaaaaaatataaaaa----at-----ttcgacaGTTCAG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2925144 55 -  4147112 --AGAAAACCATTCTATGTTG------------------TGGAAAGAACACAAAGGGAGCAC-----AAGAACTATCTAG
i caePb3.Scfld02_0     I 125 I 13
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33116856 229 + 33334924 I

a score=206.000000
s ce10.chrX             2184053 19 + 17718866 --------TCATGT---TGTAATTTTGAAA
s caeRem4.Crem_Contig0  4415818 30 +  4500979 AGGATCGTTCATGTGACTGAACTTTGGAAC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2925199 13 -  4147112 I
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33116856 229 + 33334924 I

a score=-2341.000000
s ce10.chrX             2184072 47 + 17718866 -----ATGTTATAAAGTATTA-ATAATTAAAATAGTTGGTCTGAAACGGTTGT
s caeRem4.Crem_Contig0  4415848 39 +  4500979 GTTCCAT-TCACAAACTATGATATAA-------------TCCAATACATTTAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2925212 25 -  4147112 -----ATGTCATGAATTGTGA-------------------CCAATAACG----
i caePb3.Scfld02_0     I 13 C 0
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33116856 229 + 33334924 I

a score=-9422.000000
s ce10.chrX             2184119 74 + 17718866 ---------TTTGAACCTTTCAAGTTTTCTAGTTCGTTTTACT--GTCAAAA-----AAAATTTCAAAAAAGCGTTTCATATATCTCTAG
s caeRem4.Crem_Contig0  4415887 56 +  4500979 ---------TGTGAGTCTGT-----------GACAGATTAGTTTAGAATGAGGTGCAAAAACT-------------TGATA-ATCTCTGA
i caeRem4.Crem_Contig0 C 0 I 116
s caeSp111.Scaffold629 33117085 41 + 33334924 ---------TTTTATCTTTT-----------GTTATTCTTAGT--GTCTAGAGTGGTAGAATT---------------------------
i caeSp111.Scaffold629 I 229 C 0
s caePb3.Scfld02_0      2925237 53 -  4147112 CATgcagtttttctcttttt-----------gtaaaACTAACT--GACTCAATTCTAAAACCT------AAG------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I

a score=-4805.000000
s ce10.chrX             2184193 76 + 17718866 ATTAATATTATTGTTTACTGACAACTTTTGTTGTAGAAATATTTTGAAAATGGCTCACATTTGGCAAAAAGCATCC
s caeSp111.Scaffold629 33117126 30 + 33334924 --AATTATCA-----------------------------TACatcag---tttcagtttttggg------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2925290 47 -  4147112 CCAATTATTAC----------------------GAGGACTACTGTAGACATATCATACATCGGGTCCAA-------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    82965 620 +   152553 I
e cb4.chrX             13657010 630 - 21540570 I
e caeRem4.Crem_Contig0  4415943 116 +  4500979 I

a score=-3895.000000
s ce10.chrX             2184269 46 + 17718866 TTCTTTGTTCTTACCTGGAATATATGTAGTTTTTTGAAAATTTCTT
s caeSp111.Scaffold629 33117156 11 + 33334924 -----------TACT---AATAAAT---------------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2925337 22 -  4147112 TACCTAGTTATTACT---AATAAAT---------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    83585 40 +   152553 ttgtgTGTTTTTAAG-GAACTGAAT-TTGTGTTTTGACAAGT----
i caeJap4.Scaffold4951 I 620 C 0
e cb4.chrX             13657010 630 - 21540570 I
e caeRem4.Crem_Contig0  4415943 116 +  4500979 I

a score=369.000000
s ce10.chrX             2184315 9 + 17718866 CCAATTAGA
s caeJap4.Scaffold4951    83625 8 +   152553 -CAGTTACA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2925359 0 -  4147112 C
e cb4.chrX             13657010 630 - 21540570 I
e caeSp111.Scaffold629 33117167 0 + 33334924 C
e caeRem4.Crem_Contig0  4415943 116 +  4500979 I

a score=80665.000000
s ce10.chrX             2184324 270 + 17718866 AATTCAACTC---------------ACCT-ACTGAT-TTCAGTTGAAAAAAAAAA--------------CAAAATTTTAGAGATGTACCTGAAAACAAATTCTTAATGTTCAAATTCGGATTACCAATT------TTACAGGCTGACGTTGAAAACGACAAACCAAAACCGAATACAAACAGGACGTTCGAAGTGGTTACAGTTAGTGTTGTCAATGTGGATTTTGCTAGAAAACCCAAAAAATCGGTGTATATCATGGCGAAATTCGATGGTAAAGATGTCCACCGTTCTTCGAAGTTACGAAGGT
s cb4.chrX             13657640 258 - 21540570 AATTTAATCA---------------ACCT--ACTACATAGTAGAtgcaataagaaaaaaaggactATATCAAA----------------TAAAggaaaaacgtgaa-----aattcgCAATTTGT-----------TTTAGGTAGAGGACGAGATTGAggcttcaaaattggaaaataagcGGAAATTCGAGGTGGTGACCGTGAAAATCGGTAAAGTCGAGTTTGCAAAGGCACCAAAGAAACCTTTGTATGTGATGGCCAAGTTTGATGGAAAAGATGTTCATAGATCGTTGCAGCTTGAGGGGT
i cb4.chrX             I 630 I 2
s caeRem4.Crem_Contig0  4416059 231 +  4500979 -------------------------AACT--CCTAT-TAGTGCAGCCAACAATAa--------------cgat----------------tgagaaaaaagaatcaa-----a--tcTGACTTTCC-----------TGCAGGTGGAGATAGAGGGTGACAAGCCAAAACTCAATACAAACCGGACATTTGAAGTTGTGACTGTCAATATTGCTAACGTGGAATTTGTTCGGAAGCCGAAAAAGTCTCTGTACGTGATGGCCAAGTTTGATGGAAAGGATGTGCATCGTTCTTCGAAGCTTCGAAAGT
i caeRem4.Crem_Contig0 I 116 I 68
s caeSp111.Scaffold629 33117167 229 + 33334924 -------------------------------CCTAT-TATAGTTTGGATTAagat--------------taaa----------------gaaaaaaatatcgagaa-----aaaactgaattaaC-----------TGCAGGTAGAGATTGAGGGCGACACGCCGAAACCCAATTCAAACAGAACATTCGAAGTGGTTTCTGTCAGTATTACTGGTGTTGAGTTCGTTCGGAGACCAAAGAAATCGGTTTATGTGATGGCCAAATTCGATGGAAAAGATGTTCACCGTTCTTCCAAACTCAGAAGGT
i caeSp111.Scaffold629 C 0 I 47
s caePb3.Scfld02_0      2925359 233 -  4147112 -------------------------------CTCAT-TACTGCTCaaataaaaac--------------caaa----------------gaaaaaaagaatgaaaa-gaataaaattgaattaac-----------TGCAGGTGGAGATTGAGGGCGGTCGACCAAACCCCAACTCAAATCGAACATTCGAGGTAGTAACCGTTAATATTGCTGGAGTTGAGTTCGTTCGGAGACCAAAGAAGTCGGTTTACGTGATGGCAAAGTTTGATGGAAGGGATGTTCATCGGTCGGCTAAACTTCGAAGGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    83633 262 +   152553 AATTAAATCCGATATTTATCTAAAAATCTGATTCGT-TTTAGGGACGAACAAAAA--------------TTGG----------------TAAAGGAAATATTTGAA-----TATCTTTCTTTTATATCCTTCTGATTGCAGGTGGAAATCGCCACCAACACACCGA---------CGAACAGAACATTTGAGCTTGTTTCTATCAACATTTTCAACGTTAATTTGAtccgaaaaccaaaaaaatcaatttacaTTATGGCGAAGTTTGATGGAAAAGATGTTCATCGCTCTTCAAAACTCAGATGGT
i caeJap4.Scaffold4951 C 0 I 31

a score=0.000000
s ce10.chrX             2184594 2 + 17718866 GA
e caePb3.Scfld02_0      2925592 0 -  4147112 C
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657898 2 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=281.000000
s ce10.chrX             2184596 13 + 17718866 TTTA------ATGGAAAAA
s cb4.chrX             13657900 19 - 21540570 GTTGgacgaaataaaaaaa
i cb4.chrX             I 2 I 2062
s caePb3.Scfld02_0      2925592  9 -  4147112 ----------ATATATAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    83895 31 +   152553 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=-1758.000000
s ce10.chrX             2184609 246 + 17718866 T---GTATTATAGTTCACCAAAATAATGCAAATTGAATTACTGGGGGTAACGTAGGTCCAAGCCAACTCCGCCAAGCTTCCGGTAAGCGTATAACAGTTCCGCAATATTAGGGATTGCCGGTAGGCTATAATTTTA---------------GAGAAACATG-----TCCAAAATTTCATTTGCCGCACATTACTTGTAAAAAAGTAACTTGGTACATGGCTAGGAA--------GAATCACTCTC--------------------------ATTTACAACCACCACCAACACAAGGGGAGAGC
s caePb3.Scfld02_0      2925601 273 -  4147112 CTGGTTCTCATATTTTAAAGAGAACATTGGAAGTTAATTGTTGGGGTTCAATTATGACT--Gctcatttc----------------------aataatttcacaaaatt--tgctGGCTagtattcagaatttttaaacCAACTGTTGAAGGAGGAGCAcgatatttcaaaactgttaaTTTTGTTATATAAATCATTCA----TGGCTTGAACCTCGGTTGAGAATAACTGTTGAATCGTTCTCTaaacagatttttcttttattcgaaattctgcatcaattagaaaaacaaaaaaaaaac
i caePb3.Scfld02_0     C 0 I 53
e caeJap4.Scaffold4951    83895  31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396  47 + 33334924 I
e caeRem4.Crem_Contig0  4416290  68 +  4500979 I

a score=0.000000
s ce10.chrX             2184855 55 + 17718866 AACAGAGCAAGCGGAAAGAATGTACGTCACAAAATACCGGCAGAGGCCGCATAGA
e caePb3.Scfld02_0      2925874 53 -  4147112 I
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=762.000000
s ce10.chrX             2184910 68 + 17718866 TCAAACTGTAGATAAGACATCTTGTGTGCACAGGACCACACAACAGTATATTTTTCTTTTTTGAACAt
s caePb3.Scfld02_0      2925927 51 -  4147112 TCAAACTTCTGATCAAACA-----------------AATACAACAGAGTTTTGAGTATTTTTAAACTT
i caePb3.Scfld02_0     I 53 I 155
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=0.000000
s ce10.chrX             2184978 96 + 17718866 taaaggtaaattagccactggagatttagtctaaatacacttatattgatccaaaacaaccgaatatcaaaataaaacactccaaaaaaatttaga
e caePb3.Scfld02_0      2925978 155 -  4147112 I
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=1216.000000
s ce10.chrX             2185074 100 + 17718866 tattgttttaatttcc---agtcaaagttttggcaaattgccaaatttttgaaaaatatgcgtttttaaggaaatc----cagagcaatgccgcatgCCTAAAATAT
s caePb3.Scfld02_0      2926133  99 -  4147112 tttttttttggtttcaatgaATTAGAACTTTGAATAAGATCCGAG-----aaaagatatatttttttcacaaaatctatTCAG---AATACTGCTTTCATAAAAAAT
i caePb3.Scfld02_0     I 155 I 16
e caeJap4.Scaffold4951    83895  31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396  47 + 33334924 I
e caeRem4.Crem_Contig0  4416290  68 +  4500979 I

a score=0.000000
s ce10.chrX             2185174 42 + 17718866 ATTGTCATGCTGGCACCATAGAACAGCTTTAGAAGAAACTTA
e caePb3.Scfld02_0      2926232 16 -  4147112 I
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=-153.000000
s ce10.chrX             2185216 97 + 17718866 TCAAAAATGTTGTTTCTTGCACAGTTAACTTTAACTTTGAGAGCTCCTTGTTTAAAAGACGACATTCAATCGGAAATGAAACACTTCCAGAAGATGC
s caePb3.Scfld02_0      2926248 73 -  4147112 tccacaatttttctttttccat-gtta-----------------tcatttttcaagacaTG------AACTGAAAACCTTGTAGTTCCTGATTATAG
i caePb3.Scfld02_0     I 16 C 0
e caeJap4.Scaffold4951    83895 31 +   152553 I
e cb4.chrX             13657919 2062 - 21540570 I
e caeSp111.Scaffold629 33117396 47 + 33334924 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=273.000000
s ce10.chrX             2185313 1 + 17718866 A
s cb4.chrX             13659981 1 - 21540570 A
i cb4.chrX             I 2062 C 0
s caeSp111.Scaffold629 33117443 1 + 33334924 a
i caeSp111.Scaffold629 I 47 C 0
e caePb3.Scfld02_0      2926321 0 -  4147112 C
e caeJap4.Scaffold4951    83895 31 +   152553 I
e caeRem4.Crem_Contig0  4416290 68 +  4500979 I

a score=2007.000000
s ce10.chrX             2185314 3 + 17718866 AAG
s cb4.chrX             13659982 3 - 21540570 AAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4416358 3 +  4500979 AAA
i caeRem4.Crem_Contig0 I 68 C 0
s caeSp111.Scaffold629 33117444 3 + 33334924 aaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2926321 3 -  4147112 AAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    83895 31 +   152553 I

a score=12745.000000
s ce10.chrX             2185317 44 + 17718866 TGATATCA------GAACGGAAA--------CTCAATTTCCGATGTGATCTG----AGAGAC
s cb4.chrX             13659985 50 - 21540570 TGATACCA--CTAAAAATTCAA---------CTC-ACTTCCGAATTGATCATACTAAAAGGC
i cb4.chrX             C 0 I 12
s caeRem4.Crem_Contig0  4416361 49 +  4500979 TGACATCAGGTTCATGATAGAAG--------CTC-GTTTCCGAATTGATCAT----AGAATC
i caeRem4.Crem_Contig0 C 0 I 30
s caeSp111.Scaffold629 33117447 47 + 33334924 tgatatcaGATT--ATATGAAAG--------CTC-ATTTCCGAATTGATCAT----AAAGAT
i caeSp111.Scaffold629 C 0 I 8
s caePb3.Scfld02_0      2926324 47 -  4147112 AGATCTCAAAGT--TATCGGAAG--------CTC-ATTTCCGATTTAATCAA----GAATAC
i caePb3.Scfld02_0     C 0 I 10
s caeJap4.Scaffold4951    83926 55 +   152553 TGATATCATTTC--AATCGGAAGTTGATAAATTT-ATTTCCGAATCGATTAG----AAAGGT
i caeJap4.Scaffold4951 I 31 C 0

a score=-4979.000000
s ce10.chrX             2185361 35 + 17718866 TGGGCGAGATTCTCATTTTGATAATGAGG-ACGGTG
s cb4.chrX             13660047 22 - 21540570 AGAGGAATATTCTCATCTTGCT--------------
i cb4.chrX             I 12 C 0
s caeSp111.Scaffold629 33117502 35 + 33334924 AAGggaaaacaacatttttgcTTTCAATG-ACGATA
i caeSp111.Scaffold629 I 8 C 0
s caePb3.Scfld02_0      2926381 31 -  4147112 AGAGTAGAAC----CTTTTACTAACGATG-ACGATT
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold4951    83981 20 +   152553 ----------------TTGGACAGAAATGCGTGGTA
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4416410 30 +  4500979 I

a score=141227.000000
s ce10.chrX             2185396 445 + 17718866  
s cb4.chrX             13660069 453 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4416440 432 +  4500979  
i caeRem4.Crem_Contig0 I 30 C 0
s caeSp111.Scaffold629 33117537 420 + 33334924  
i caeSp111.Scaffold629 C 0 I 140
s caePb3.Scfld02_0      2926412 431 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    84001 386 +   152553  
i caeJap4.Scaffold4951 C 0 I 1

a score=119.000000
s ce10.chrX             2185841 2 + 17718866 TT
s cb4.chrX             13660522 2 - 21540570 at
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0  4416872 2 +  4500979 tt
i caeRem4.Crem_Contig0 C 0 I 128
s caePb3.Scfld02_0      2926843 2 -  4147112 tt
i caePb3.Scfld02_0     C 0 I 112
s caeJap4.Scaffold4951    84388 2 +   152553 CC
i caeJap4.Scaffold4951 I 1 C 0
e caeSp111.Scaffold629 33117957 140 + 33334924 I

a score=-1706.000000
s ce10.chrX             2185843 50 + 17718866 ATAATTAAACTGCGAA---TTTTTTCAAAAATCCAACTCC------------ACAAAAAAACATT
s cb4.chrX             13660525 61 - 21540570 tttatttaattattca---ttctcggaaaaa-aaaactctataGGTCATAGAACAAGACAACAAC
i cb4.chrX             I 1 C 0
s caeJap4.Scaffold4951    84390 54 +   152553 ATTCTCGAACTCTGTGCGCTTCTTT-------TCATCtct----tttattgcaaaaaaaaccttt
i caeJap4.Scaffold4951 C 0 I 286
e caePb3.Scfld02_0      2926845 112 -  4147112 I
e caeSp111.Scaffold629 33117957 140 + 33334924 I
e caeRem4.Crem_Contig0  4416874 128 +  4500979 I

a score=473.000000
s ce10.chrX             2185893 5 + 17718866 TTCTG
s cb4.chrX             13660586 5 - 21540570 TTCTG
i cb4.chrX             C 0 I 133
e caePb3.Scfld02_0      2926845 112 -  4147112 I
e caeJap4.Scaffold4951    84444 286 +   152553 I
e caeSp111.Scaffold629 33117957 140 + 33334924 I
e caeRem4.Crem_Contig0  4416874 128 +  4500979 I

a score=0.000000
s ce10.chrX             2185898 599 + 17718866  
e caePb3.Scfld02_0      2926845 112 -  4147112 I
e caeJap4.Scaffold4951    84444 286 +   152553 I
e cb4.chrX             13660591 133 - 21540570 I
e caeSp111.Scaffold629 33117957 140 + 33334924 I
e caeRem4.Crem_Contig0  4416874 128 +  4500979 I

a score=202.000000
s ce10.chrX             2186497 24 + 17718866 TTTGTAAATTTTGTATAAACTT--GA
s caePb3.Scfld02_0      2926957 26 -  4147112 TTGGTAATTGTTATGCTAATTTTTGT
i caePb3.Scfld02_0     I 112 C 0
e caeJap4.Scaffold4951    84444 286 +   152553 I
e cb4.chrX             13660591 133 - 21540570 I
e caeSp111.Scaffold629 33117957 140 + 33334924 I
e caeRem4.Crem_Contig0  4416874 128 +  4500979 I

a score=906.000000
s ce10.chrX             2186521 37 + 17718866 CAATTGAACAGTTAAATGGGTTGTAGGTTCATGTTAA
s caeSp111.Scaffold629 33118097 28 + 33334924 caaaagaatagtcaaaa--actgaaggttt-------
i caeSp111.Scaffold629 I 140 C 0
s caePb3.Scfld02_0      2926983 37 -  4147112 TGATCGAAGAATTGAAACGGTGGATGGTTCATGTTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84444 286 +   152553 I
e cb4.chrX             13660591 133 - 21540570 I
e caeRem4.Crem_Contig0  4416874 128 +  4500979 I

a score=13636.000000
s ce10.chrX             2186558 63 + 17718866 ATTCCATTTCCGGTTG--------CCTGTGATGTAATGAGTTGAATT----------GGAAAAAA-------------------------TGTGTATTCGCGCCAT
s caeRem4.Crem_Contig0  4417002 94 +  4500979 ATTCAACTCGCGGTCGGGTTTGTACCTGTGACGtaatgaattgaattgaattgagaGGGGCAAAAAAGAACCGAATAGTT----------TTTGTATTTGGTAT--
i caeRem4.Crem_Contig0 I 128 C 0
s caeSp111.Scaffold629 33118125 79 + 33334924 atttcatttccgGTTGTGTGTGTACCTGTGACGTAACGAATTGAATT----------GGGAAAC----CTCCGAATCGT-----------TTTCTGTTTGGAAT--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2927020 94 -  4147112 ATTCCATTTCCGGTCATGTTTGTACCTGTGACGTAACcagttgaatt----------gaaaaaaaaagaaccgaaTAGTTTTGTATTTGGTTTCCATTTGGTAT--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84444 286 +   152553 I
e cb4.chrX             13660591 133 - 21540570 I

a score=10899.000000
s ce10.chrX             2186621 53 + 17718866 TCAATTCTGATC-CATTCCTCGGTTCGTTCTATCAAAAACCACCCCAATTCATG
s cb4.chrX             13660724 37 - 21540570 tcTGTTCTGACC-CTTTCCGAGGC------------GAA----CCCAATTTATG
i cb4.chrX             I 133 C 0
s caeRem4.Crem_Contig0  4417096 39 +  4500979 TCTGTTCTGATC-CTTCTTTTCGCC----------AAAA----CCCAATTTGTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33118204 40 + 33334924 TCTGTTCTGATC-ctcttttcaatc---------aaaaa----cccAATTTGTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2927114 45 -  4147112 TCTgttctgatcttttttttccacc---------aaaaaaaccTCCAATTTATG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84444 286 +   152553 I

a score=185972.000000
s ce10.chrX             2186674 226 + 17718866 ACCTTTCTCCCAA--CTAG--------TTCTCTTTAATCATCAAACATCACACAGGGTCGAAGGCAAAAGTGGCTCGTCCTGTGGGAAAGGTGTCAATTGCAAAAAAGGATCTTGAGGTTGGAACTCCGTTTGAGCAAACGTTGAAACTGTGTGCCGTGTCTAAGTATCTCGACTTCTGCGGCCAAATTTGTGTTGATATCCGACGCCGAGCCGGCTCGTTCTCTTTGAGGTGAGT
s cb4.chrX             13660761 234 - 21540570 ATCATTTCGCCAA--CTAGTCTcgattccatttttcatcatCAAACATCGCACAGGATCCAAAGCAAAAGTGGCTCGTCCCGTGGGAAAGGTGTCGATTGCGAAGAAAGAGCTGGAGGTTGGAACTCCACTCGAACAAACCTTGAAACTGTGTCCTGTATCCAAGTATCCGGACTTTTGCGGTCAGATTTGTGTGGAGATTCGTCGCAGGGCTGGCGCCTTTTCATTGAGgttagt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4417135 220 +  4500979 ACCCTCCCGGCAA--CTAG------------TTTTGATCATCAAACAT--CACAGGATCAAAAGCAAAAGTGGCTCGTCCCGTGGGAAAGGTGTCGATTGCAAGAAAGGATCTTGAAGTTGGAGCTCCACTCGAACAGACTTTGAAACTGTGCGCCGTGTCCAAGTATCCTGATTTCTGTGGTCAGATTTGTATTGATATCCGTCGTCGGACGGGCTCATTTTCTTTGAGGTGAGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33118244 211 + 33334924 A---------CAA--CTAG-----------TTCTGAACC-TCAAACAT--CACAGGTTCAAAAGCAAAAGTGGCTCGTCCAGTGGGAAAAGTgtcaattacaaaaaaggATCTGGAAGTTGGAAATCCTCTCGAGCAAACCCTGAAACTGTGTGCCGTGTCAAAGTATCCCGACTTCTGCGGCCAAATTTGCATTGATATCCGCCGGAAGGCTGGATCTTTCTCATTGAGGTACGT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2927159 212 -  4147112 A---------CAA--CTAG-----------TTTTTAATCATCAAACAT--CACAGGATCAAAAGCAAAAGTGGCTCGTCCCGTGGGAAAGGTGTCAATTGCTAGGAGGGATCTTGAGGTTGGAACTCCACTGGAgcaaactttgaaactgtGCGCCGTCTCCAAATATCCGGATTTTATCGGTCAGATCTGCATTGACATCCGTCGTCGGGAAGGCGTCTTCTCCTTGAGGTATAT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    84730 223 +   152553 acatttctttcaaatcTGA-----------TGTTTTATCATCAACCAT--TACAGGCTCAAAAGCAAAAGTGGCTCGTCCCGTGGGAAAAGTGTCGATAGCAAGAAATGATCTCGAGATCGGAACGCCACTAGAGCAGACATTAAGACTGTGCGCCGTTTCCAAGTACCCCGATTTTTGTGGCCAAATTTGCATTGATATTCGTCGCCAACCAGGTTCATTCTCTCTGAGGTTAGT
i caeJap4.Scaffold4951 I 286 I 2794

a score=422.000000
s ce10.chrX             2186900 1 + 17718866 T
s cb4.chrX             13660995 1 - 21540570 t
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4417355 1 +  4500979 T
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33118455 1 + 33334924 T
i caeSp111.Scaffold629 C 0 I 1739
s caePb3.Scfld02_0      2927371 1 -  4147112 C
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I

a score=-45790.000000
s ce10.chrX             2186901 120 + 17718866 -------------------------------------------------AGTTCGATTAATTT-------------------------------------------AAATATT-----CCACTGAAAACTTTTAAAAG--------------------GCTGCT---------GTTAAAATTGAACAATTTTCAAA--------------------------ACTTACAAC----GAAT-----CCT----AAAACCGATT----------GTCAAACGTCT--------------------------CATAATCATCACA--------------------------------------------------------
s cb4.chrX             13660996 233 - 21540570 ta-------------aaaat-----------------ttgaaaact-caaaatcggTAAAAGT-------------CTTTGTgagagaaaaatca-----------gaatttt----tctgttagaaaattttaaagt--aaaTACATCAG-------TCTGCTCGTTCAATGATT-taatacttttttctcaaaataa--------------------tcCATCTTCGAC----AAATTAGGGCCC----AAAGGCCATTTACAGTTTGAAACCTAAAACC-ACGCGCCTTAtcgcaaaga----aaaaaaaccgggaAACA-----------------------------TTTACGTGCTGA-------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4417356 293 +  4500979 TATTCGATCTACTT-AACATCACTTTTGTTCATTTACTTGAATTAT-GATATTCAGTTATAGTTG-----------CTTTACTGAAGgtaa---a-----------gaa-----------accaaaaaatgtcatAAT---------TCAA-------TCTACC---------att-gaatcagtttttcttcgaGTAACGACTAGTCGTACCTAAACTTTCACCTCCCTC--CTAAACTTTCACCTATGGAAAAGcaatt-----ttccagtcaaaagACCAACTCCTTTTGTTGTggtggttttgaaaaaattatgaaacactTGCGttgaaaaaccggaaaaccCACGTTTTACGTGTTCa-------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2927372 311 -  4147112 ----ATATCTATTTCAGGATCTACTTGAATTGAGTACTCAATTAGTATACATTCAGGCATACTAGGTAGAATTGATCAATATGGGAAATAAGTAAATCCCACAAGTGAATCttatgaatttccagaaattctgaaactttgatgACATGAGTTGTGGTTCTAAT--------------AATAAAATGGTATTCGGATAAAATTCGATCAAGCTTC----TTTACTTTGTTCAACTTGATTCTTGCCA----AAAACGCGCT--------CAGTAAGAAAACC-----------TCGAATCGAATTC--AGCAATTATGTAgca------------ttctagaaaa-------ttctcgTATTGTGCCtctcaccaca
i caePb3.Scfld02_0     C 0 I 131
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I

a score=34095.000000
s ce10.chrX             2187021 243 + 17718866 --CCATGTGTT-----ATT---------TTCCTATCAC------------------TATTTACAGAGCGTGCT--GTTCTTATCAATTGCATACTTGTTTC--CTATTCTGATTTATGC------CTTCAG------------------CTCCTCCCGAAAA----CCTTTT----TTT-TGCTCAATTATTGC---AAAGTGT-TTTCCCGTTTTTTCCAAGAGAAGTTCAAACATCTCACGTTATTCTTTTGTTTT--TTTTTCTTGCTGGGA-CCTATTCATTGATGCTTAAGCGAGCATATCTCATC--AAACAAAAGT
s cb4.chrX             13661229 298 - 21540570 ACATATGtttt-----tttGAGTGGTATTTACCCTCAATATCATTCCAGCCAACCTTATTTGCACATCGTCTTAAATTCTTATCA------TACTCGTCTCCCTGATTTTTATATAAGACAATAATTTCCGTTACTCcgcattttttgtttcctcccgaaaaacttctttttcattttt-gatcgAGCACCTGCACGGGAGTATGttt----ttttACCCGATAGAAGTTCAAACATCCca----gctttttttgttttgttttt-----tgagattccatTTGCCAGTGTTCAGCCAAGCATAAATACCATCAAAAGAAAGT
i cb4.chrX             C 0 I 1050
s caeRem4.Crem_Contig0  4417649 258 +  4500979 gcacatgtttt-----ttt-cttgtttcatacTTTTTA-----------------TTGTTTGCAGACCGTCTT--ATTCTTATCAATCGCTTACCCCTCCTGactattttcatttataa-acTGATTTCCG------------------TTTCTCCCGAAAA----CTTTTTCACCTTT-GATTCAATGAGAGC---tgagtgt-ttt----ttttgtcCGAGAGAAGTTCAAACATCTTACGttattctttttgttt--tttgt-----tgaga-tcCATTGATTGATGTTTTACCGAGCGTAGCTCATctttatgaaaaat
i caeRem4.Crem_Contig0 C 0 I 44
s caePb3.Scfld02_0      2927814 259 -  4147112 --cCACGTTTTACGTGTTC-ATCGCCTGTTTTTCTTAA------------------TGTTTGCACAATGTCTT--ATTCTTATCAATCGTCTACTCCCCCTAACAATTCTCATTTATAA-AATGATTTCCG------------------TTtcttccgaaaa----ctttttcaccTTTAGGTTTAGCAAA------AGAGAGTGttt----ttttGCCGGGGAGAAGTTCAAACATCTTACGttattctcttttgtt--ttttc-----tgaga-tCCATTCATTGGTGTTTAACCAGGCGTAGCTCatcaatatgaaaaat
i caePb3.Scfld02_0     I 131 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I

a score=549.000000
s ce10.chrX             2187264 339 + 17718866 CAGAAGCAAGTCATATGTAGTTTGG----TGAAG----AATAG-------TGA---GAGCATTTGTACA----TTGTTTAAAAGTTTTGACAGTTCAAAAACTGCTTT---CCAATTTCATCTTGCAAATTGAAA-------------A-ATTGTT---------AATTCGTTCAACAATCAGTCTAGCGGAAAAGCTAAC---------------------AAAAAACTTTCCAACT-----------------------ACAAATCAATC-AAAATTAACA--GAAAATTTAATGTCATAAATCTGTTGTGAAACAATA-CCCTAGGATTATA---TTACCTACGCATACATGAATTCTTCTCGGTTTTGTATTTTAATCCCCAGGCCG----------------C--ATTTTAGTTCCTTTTTAG-----TTTTTTTTT------GTGCAACCC-------------GAACCTCTAT
s caeRem4.Crem_Contig0  4417951 408 +  4500979 tgAAGACGGGATGCATGTAGCCTAA----TTTAGTTGGAATAACTACGTCTGCCATGGAAGTTTCTAAT----TTAC---AAAAGTCTCTAatttcatcttcttattc---caagTTTTAATTTGCAAA--CAAA-------AACTTCACATTCTCTTGCAATCAAAACCGT--TACAATCAGTCTAGTGTAAAAACCAATAGACTCATTATCAGCCCATTTAAAACGTTTTCTATTTggtttttgacttctggagcggGCGAGAATAAA---AGTGGCAACC--AAACAGTTATTAGTATCATTGAGCTGTCAAACAATACCTCTAGGATTATA---CTACCTACGCGTACA---------CCCAGTCTC---TCTTGTTTCCCTAATCC--------TTTCTCCac--atttctgttcttttttca-----tttttcgcc------gTACACTCC------GTCGAACGAACGTCTGT
i caeRem4.Crem_Contig0 I 44 I 164
s caePb3.Scfld02_0      2928073 456 -  4147112 tgtgagcGTCAGcgattttgttcaaaaagttcag--gaAATAA--ACTTCTGC---GGGGGTTATTAATCGGATTATAGGAAATagttttcattccaaactTGTAGTCTGTCCAACGATAATTTGCAGA--GAAATTGTAATTGTTTCA-ATTGTCTTGCGTT--AATTTGT-AAATAATGATTTTAGCAAAAAGTCAGAGACAATCTTTATCagtc-----aaaatgttttccaattggtttttgacttttgaacgaaacaaaaaggaattgaaaggcagcaggaaaaaaatattagtacTAAAGAGCTGTCAAACAATA-CTATAGGATTATAGTGGTACCTACGCGTACATTTGTTC--TCTACTCTC---TTTTAATCCCCTCAcccaattttattttctaaacgtatttcttttcttctacgAACGTTTGTATCACCACTTGAATACAATTCTAAAAGGTCATTCCCACCACTAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I

a score=-2089.000000
s ce10.chrX             2187603 200 + 17718866 GT------TTTATTT-------------TGTCAGTTGGTTATT-------GCTTGTGAAC-------AAACTTTTTTTTGGAACAAATTAAAGTG-----------------TTTAGCTTTGCTACCTAATAGGATTTTCCTATTCAACTTTGTGCAAAATTATAAAAAAATGTATTATAGTGACTTTTT-----CATTTTTTTTTCCGAAAATATTCTTTGCAAATA-------TTAATAGTAG---------TAATTGTTTTTGAA---ATG
s caePb3.Scfld02_0      2928529 259 -  4147112 TCACCACATCTATTTCGCCATCTTCAACtgccattccatttttctcacccacttttcatcgtcttctattcttttctttg----aagtaAAAGTGACATGAGGGAggagatttttctttttgcaaagaaagag----ttcctagt---ttttttgaaaag----aagtaaGTGTAGGGTAATAACTCAGTCCGaccatttcaaaacttgaaaagacCAAGTTCAAacaaagaagttgaagaataaAGCGGGggctacttttttttgaagccacG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I
e caeRem4.Crem_Contig0  4418359 164 +  4500979 I

a score=-3488.000000
s ce10.chrX             2187803 107 + 17718866 --------------CTGATTTCCAAAAAATTTTACTCAACAAAAAAAA-----------TTACTATTTAGTTATAAATTTCAGTGTAAAATTATGTCTGTAGTACAGAAG----TTTTTTTTACA-ATAAAATTGGC
s caeRem4.Crem_Contig0  4418523  89 +  4500979 --------------ctaattttcaaaaaattt------------tgggtaGGGTACCCCGCATCTCTTGGTTTCAGTT-----------------CCCGCGGTACtaaaa----ttcttttcaaa-aaacagttggT
i caeRem4.Crem_Contig0 I 164 I 27
s caePb3.Scfld02_0      2928788  94 -  4147112 GAAACATAGTAGACGttttttccaacaaagtt------------AGAA-----------GAACCACCTGGGTTCGAAA-----------------AATACAactttgaaagatttttttttcacctgaaTCGTT---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I

a score=-1455.000000
s ce10.chrX             2187910  59 + 17718866 GCCT--GAGCCCCCCCCC---CCCCCCAAAA-------AAAGTGGA-------------------TGTCACAACAAAA---ACCAGT------------------TGCTCA
s caePb3.Scfld02_0      2928882 111 -  4147112 GTTTTAGAGCTTCTTGTCAAACCTCTCATAAGTTCCATACAGTAGATCATTGTTCCCCTTTTTGTtgtcatgaaaaaattgatcagtGCTGATCCAATCCGGAAAtattgg
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I
e caeRem4.Crem_Contig0  4418612  27 +  4500979 I

a score=-1441.000000
s ce10.chrX             2187969 63 + 17718866 AAATTCT------------------TCACCTTAAAGTTTTAATAACCTTTCTCGTGACACCTC---GT------GTGTTTTTGCTTTTCG
s caeRem4.Crem_Contig0  4418639 60 +  4500979 -------------------------AAACTCTTGACTTGTGAAAATAT----CATGAAATTTCAAGGCACATGgatgtgttttcttttc-
i caeRem4.Crem_Contig0 I 27 C 0
s caePb3.Scfld02_0      2928993 82 -  4147112 -aatttcgaaaacttaaaaaaacaatgactCGTGAGTTGTGATAACCTTTCACATTAactttc---tcac----atttttttgcGTTGCG
i caePb3.Scfld02_0     C 0 I 49
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I
e caeSp111.Scaffold629 33118456 1739 + 33334924 I

a score=15416.000000
s ce10.chrX             2188032 120 + 17718866 TTTGTTT--AAAAT-AACATTTCAAGAACGTGGGTTATAAAATTTTTTTGCGATCTCAGAAATCT---GCGAAAAAAAAACAAAATGAAAACACACATTCAAATACACTTATTTTGACGGGG-------GTGG-------
s caeRem4.Crem_Contig0  4418699  90 +  4500979 ----ttttcaaaacaaaaatttcaaga--tgagataataaaa--atcgtgaaatctcagaaatcgca-aagaaaagaaa-------------------------acacttaTTTCAACG----------GCGGG------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120195 104 + 33334924 tttgttttcaaaac-aaaatatcaAGA--GAAGACAATAAAA---ATCGGAGATCTCAGAAACc----gtgaaatgaaa-------------------------acactTATTTCAACGTGTGGTAGTAGTGGGG-GTGG
i caeSp111.Scaffold629 I 1739 C 0
s caePb3.Scfld02_0      2929124 109 -  4147112 tttgttttcaaaac-aaaatttcaaga--tgagataataaaa--tttttgagatctcAGAAATcgagagtgaaaagaaa-------------------------acacttATTTCAACGGGCGATAGTAGCGGGGTGTG-
i caePb3.Scfld02_0     I 49 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13661527 1050 - 21540570 I

a score=48459.000000
s ce10.chrX             2188152 105 + 17718866 TGAGGTGCTTGAACATTATTGCTTCCGAAT-ACCACTTCTTCTTTTTCGCATGTTTTTCTTTCTGCTTGACCTGTC--ATATTCC-----TATTTTTGTCG-CTAC-----TTCTCGGC
s cb4.chrX             13662577 103 - 21540570 TGGGTTCCCGGAACATTATTGCTTCCGAATAACAATTTTTATGC-----CATGTTTTTCTTTCTGCTTGACCTGTC--ACattcccccattttttttcttt-tttgtaggC--------
i cb4.chrX             I 1050 I 451
s caeRem4.Crem_Contig0  4418789  92 +  4500979 TCTGGTGCTCGAACATTATTGCTTCCGAAT-ACCACTTCTATGc-----tatgtttttctttctgctTGACCTGTC--ATATTCC-----TATTTTTGTCG-CTTG-------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120299  95 + 33334924 CTAGAGTCTCGAACATTATTGCTTCCGAAT-ACCACTTTTTCgc-----catgtttttctttctgcttGACCTGTCATACATTCC-----TATTTTTGTCGCTTTT-------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2929233  87 -  4147112 -------CTCGAACATTATTGCTTCCGAAT-ACCACTTCTTTgc-----catgtttttctttctgcttGACCTGTCATATATTCC-----TATTTTTGTCG-TTTA-------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I

a score=2973.000000
s ce10.chrX             2188257 10 + 17718866 GTGGGTGGTA-------
s caeRem4.Crem_Contig0  4418881 17 +  4500979 GTGGGTGGCATGCCGGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120394 10 + 33334924 GGGGGTGGTA-------
i caeSp111.Scaffold629 C 0 I 412
s caePb3.Scfld02_0      2929320 10 -  4147112 GTGGGTGGTA-------
i caePb3.Scfld02_0     C 0 I 7
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I

a score=1177.000000
s ce10.chrX             2188267  99 + 17718866 -------------------TTTGAAGCCGCCCCCCATTGACATATAAATATATTTATATGTATATACGTGAATATATTTG----TTTTTTATAACAGCAGTGCCTAATTCTGCTTTTTCAAC--------
s caeRem4.Crem_Contig0  4418898  88 +  4500979 -------------------TTTGGAATAGCTCAACGCCCACA-------------TTATGTATA------Actttctttccagattctgttttccagcagttc----ttctcagttttcacttcttcaac
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2929337 100 -  4147112 TCCGGAACAGCTCACTTTTGTTGGAATAGCTCACCACCCCCC--------TGTTTTCATGTATA------actttccttt----tcttatttttcagccgttc----ttctcaattttcagc--------
i caePb3.Scfld02_0     I 7 I 42
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I
e caeSp111.Scaffold629 33120404 412 + 33334924 I

a score=270.000000
s ce10.chrX             2188366 8 + 17718866 ATTTCTAT
s caeRem4.Crem_Contig0  4418986 8 +  4500979 gttttttt
i caeRem4.Crem_Contig0 C 0 I 129
e caePb3.Scfld02_0      2929437 42 -  4147112 I
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I
e caeSp111.Scaffold629 33120404 412 + 33334924 I

a score=0.000000
s ce10.chrX             2188374 77 + 17718866 AATAAATTAACGTTTAAAGGATAAACCGCAATCACCAAATAGCatttttaaaaattcaaaattttgtaaaattagaa
e caePb3.Scfld02_0      2929437 42 -  4147112 I
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I
e caeSp111.Scaffold629 33120404 412 + 33334924 I
e caeRem4.Crem_Contig0  4418994 129 +  4500979 I

a score=-929.000000
s ce10.chrX             2188451 94 + 17718866 ttttctgaaaatttaataaattCTCTATGTTTGCCATTTTTTGAAGTAGACGATGAAAACAAAAAAATTTGCTCCGA------TTTTCATGCACTACTTT
s caePb3.Scfld02_0      2929479 55 -  4147112 ttttc---------------ttccgtAAATCTGACACTT----------------------------CTTGCTCCAAAGATAGCTATCAGGCgttaat--
i caePb3.Scfld02_0     I 42 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I
e caeSp111.Scaffold629 33120404 412 + 33334924 I
e caeRem4.Crem_Contig0  4418994 129 +  4500979 I

a score=-20901.000000
s ce10.chrX             2188545 419 + 17718866 -TTAAAAGAATTTTAATGTTTAACAGTGCTGCAATTTtttcaaaaaatggcgaaaactcagtaattgccactttctgactatcaaaaaaaatttttctaaaattttttaaaaagttttactatgatatttggccattttggggcaccataggAGTAGCTCCTCCACCTTTCAGTCTTTGTTTATGCGGGAAAAAAACTCGCCGCCTTAATCAAGATACCCATCAAAAGTTGATGAAAAAACTCCTATTTTT-----------CTTTAAGTCATTGTGTAAAAAATTAAA---------AAAAAAAACTTCCGCGTTATTCTGTATCATGGATGGTTAATTGTGAAAATCACATTAGAAAATTTTAATACTTCTCGTTATCGCAAAAAAGTCACATTATGATCGTTTTGCACTTCTCATATATCTATTGATGATTCTTCAT
s caeRem4.Crem_Contig0  4419123 263 +  4500979 -gaaaaatgatttaagTTTCTATTATTATTCTTATTATTC-------------ATATTCAGT-ATGACCATGTTAtaggaaaacaagaaaaagttttgaaatccaaTTA--------------------TAcccattat----------------------------------------tttgaaatatcgaGTAGTCCATGGCCTC--------------------------------ATTCTTATTCTCTGATGTACTGACTATCAATCACTCAACGGCGAACTTTC----------------TCCTTCTCTCGACCTTTTTCCATGAGATAT--------------ACCCCGAAATACTTGGA---TTGTTGGTGgcggagaaaagaaaaagaagaaaca-------------------------------------
i caeRem4.Crem_Contig0 I 129 C 0
s caePb3.Scfld02_0      2929534 228 -  4147112 gagaaaaaaacaggagt------------------------------------AAACACAG--ATAGATGCGTGGGAGG-----AAGAAAATTTCTCACGTTTTATGCA--------------------CATCAATCATGAGCAATAATTAGAG-AGATCTTCCA-------------ATTTGAAAGGTGGAGAAGTTCG------------------------------------------ATTGTCCTC------------------TCATCCCGTTGAAGACAATCAATCACCCAGACGAAaactttctct---tcatttctcatgaagaa------------------ccgaaaaa----aa---ttggtggtgGCTGGGAAGTAAGAC-----------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I
e caeSp111.Scaffold629 33120404 412 + 33334924 I

a score=927.000000
s ce10.chrX             2188964 7 + 17718866 GAAATCA
s caeRem4.Crem_Contig0  4419386 7 +  4500979 gaaaaga
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120816 6 + 33334924 -gaaata
i caeSp111.Scaffold629 I 412 C 0
s caePb3.Scfld02_0      2929762 6 -  4147112 -AGAAGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    84953 2794 +   152553 I
e cb4.chrX             13662680 451 - 21540570 I

a score=63478.000000
s ce10.chrX             2188971 64 + 17718866 AAGCACCGGAAGCCGTGGGAAGT-----GATGCTCTTTCAACTGATATTGTGATATTAATGAAAGTGAC
s cb4.chrX             13663131 56 - 21540570 AGGGACCGGAAGTCGTGGGTAGCACAC-------------ACTGATATTGTGATATTAATGAAGGTGAC
i cb4.chrX             I 451 C 0
s caeRem4.Crem_Contig0  4419393 69 +  4500979 agggACCGGAAGCCGTGGGTAGCGTGTTGCTGCTCTTTCAACTGATATTGTGATATTAATGAAGGTGAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120822 64 + 33334924 agGGACCGGAAGTCGTGGGAAGC-----ACTGCTCTTTCAACTGATATTGTGATATTAATGAGGGTGAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2929768 69 -  4147112 AGGGACCGGAAGTCGTGGGAAGCGTGTTGCTGCTCTTTCAACTGATATTGTGATATTAATGAAGGTGAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    87747 61 +   152553 AAAAACCGGAAGTCGTGGGT--------TCTGCTCATTCAACTGATATTGTGATATTAATGAAGGTGAC
i caeJap4.Scaffold4951 I 2794 I 21

a score=6456.000000
s ce10.chrX             2189035 20 + 17718866 ATTGCACCGCAA---AGCTCCCT--------
s cb4.chrX             13663187 31 - 21540570 ATTGCACCGCAAGTGAGCTGCTCTTTCTCTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4419462 26 +  4500979 ATTGCACCGCAA--GAGCTACCCGTGAG---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33120886 23 + 33334924 ATTGCACCGCAGAGAAGCTTCCG--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2929837 20 -  4147112 ATTGCACCGCAG---AGCTTCCG--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    87808 21 +   152553 I

a score=10068.000000
s ce10.chrX             2189055 153 + 17718866 CGCCCGAGTGAGCAAACAGCTGTTTGGCATGCGTCCAACTCA---------------------------------------CGTTTT---------CTCT---------TGATCGCCGTAACGTTTTTTTTTTCCTGCTTTCGT--CCCTGCG----TGGGAGTTT----------CCGTTCCATTATCATT------GTGCATGC--TCTT--------CACCTTTTTTGACCGTTTCTTT------
s cb4.chrX             13663218 164 - 21540570 CTCTCCCTCGAGCAAACAGATGTTTGGCACGCGTCCACATC----------------------------------------TGATCGGGTGCCCCGTCCg---------aca--gacaaaatgtttt-----------tttctc--acctGCG----TGGGAGTTCC--------TTCGTTATCTTAACTTTTTTGACATTGCTCC--TTTAAACTTGCATTTCCCATTTTGACATGACTTC------
i cb4.chrX             C 0 I 20
s caeRem4.Crem_Contig0  4419488 135 +  4500979 ------AGAGAGCAAACAGCTGTTTGGCATGCGTCCAACTCT---------------------------------------TGATCA----------CCG---------TAA--GGCAAAACG-----------------TCTC--ACCTGCG----TGGGAGTTC-----------------cttatcttttttta-attgttccATTTTAAACAGACCGTTTTCCTTTTAAAATGACCTC------
i caeRem4.Crem_Contig0 C 0 I 9
s caeSp111.Scaffold629 33120909 130 + 33334924 ------AGTGAGCAAACAGCTGTTTGGCATGCATCCAACTCA---------------------------------------CGTTTG----------TCT---------TAA--GTCGAAACG-----------------TCTTTCGTCTGCG----TGGGAGTTCT--------TCCGTTC-CTTATCTTG------GGTTTTCC--CTTA--------CTTCCCTTCTCAAATCGTTCCC------
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2929857 128 -  4147112 ------AGTGAGCAAACAGCTGTTTGGCATGCGTCCAACTCA---------------------------------------CGTTTG----------CCTTGATCGCCGTAA--GGCGAAATG-----------------TCTT--GTCTGCG----TGGGAGTTCC--------TCCGTTC-CTTATCGCA------ATT-------------------CTCCCTTTTTCAACCCTTCATC------
i caePb3.Scfld02_0     C 0 I 31
s caeJap4.Scaffold4951    87829 201 +   152553 AGTGAGAGGGAGCAAGCAGCTGTTTGGCATGCGTCCAACCCTTCAGTTTCACTGGTGGGGGTGGATGCTGCGTGGGAGTTCCGTTTA----------TTA---------TCAT-AGCTAATCG-----------------TTTT--GCTTGCGCTCTTTAATGTCTTATTCCGTGTTCGTTt-cctgttgtt------tttttttgcatttgcaTTTGC-ATCTCCATCTCCAATTGAcccctccccc
i caeJap4.Scaffold4951 I 21 C 0

a score=-19564.000000
s ce10.chrX             2189208  30 + 17718866 ---------------------------TAGGT------AAAGAAAGGAAT-----------------GCGTGGGTTGCGT----------------------------------------------------------
s cb4.chrX             13663402  26 - 21540570 ---------------------------aattg---------gaACGGAAG-----------------GCGGGGGTAGAG-----------------------------------------------------------
i cb4.chrX             I 20 C 0
s caeRem4.Crem_Contig0  4419632  35 +  4500979 ---------------------------GAGGGAAGGAAAGTAAAAAGAAG-----------------GCGGGGGTTGTG-----------------------------------------------------------
i caeRem4.Crem_Contig0 I 9 C 0
s caeSp111.Scaffold629 33121040  21 + 33334924 --------------------------------------ACTTGACTGAAC-----------------TATTTGATT--------------------------------------------------------------
i caeSp111.Scaffold629 I 1 I 8
s caeJap4.Scaffold4951    88030 137 +   152553 tccccctcactcccctcGGAGTAAAAAGATGTAGgcggaagaaaaagaagaagaagaataccGAGGTGGGTGGGTTGGG-GTGGTGCTTTGGTGTTCCTCCtccattctttctttttccttcttcCGATCGCCAACTT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2929985  31 -  4147112 I

a score=59486.000000
s ce10.chrX             2189238 146 + 17718866 ---AGGAAAACAGAAAACAGAAAACAGGCGTCAATTGAAAAAGTGGGAGAACAAATTGGTGTGAAAATTGAGAACACGGAGTAGTGAGAGTCCAAT-AAATATGAATTACACATTGTACTT-------------------G-GCT--CAATTGCATT-ACATCTTTTGTCGGC
s cb4.chrX             13663428 155 - 21540570 ---ataaaactg--------agaaaatgcgGCAATttacaaagaagaagaacaaattgGCGTGAAGAAAgcaaa----gaagaggaagagcgCAATAAAATATGAATTACACCTTGTACCCCCGCGTCTCCTATCCACCAG-GCTCACAATTGCTTT-GTCT-TTTTGTCGGC
i cb4.chrX             C 0 I 920
s caeRem4.Crem_Contig0  4419667 124 +  4500979 ---AAGACA-------------AGAAGGCGGCGATTTGCA------AGGAACAAATTGGCGTgaagatagagaa----aaagaggaagagcgCAATAAAATATGAATTACACCTTGTACTC-------------------G-GCT--CAATTGCATT-GCATCTTTTGTCGGc
i caeRem4.Crem_Contig0 C 0 I 17
s caeSp111.Scaffold629 33121069 122 + 33334924 ---GGAACTTTGGAATTAGAATGAAAAGCGGCAAT-----------GGGAGCAAA-TGACGGGAAGATGGAGAA-------------GAGCGcaataaaatatgaattaCACCTTGTACTA-------------------G-GCT--TAATTGCATT-GCATCTTTTGTCggc
i caeSp111.Scaffold629 I 8 I 21
s caePb3.Scfld02_0      2930016 132 -  4147112 ---GAAAAAGCGGGGGCTGGGGGAAGTGCGGCAATTTGCA------AGGAACAAATTGTCGTGAAAACCGAGAG----------GATGAGAGCAAT-AAATATGAATTACACCTTGTACTC-------------------GTgct--caatttctttcaaatcttttgtcggc
i caePb3.Scfld02_0     I 31 I 14
s caeJap4.Scaffold4951    88167 127 +   152553 TTGGACaaagaaaagagaaatgaAATGACGGCAATTTACAAGCGAAATTGGCAAATTGGCGTGAA------GAA-------------GAGCGCAATAAAATATGAATTACACCTTGCACTC-------------------G-GCT--CAATTGCATC-----TTTTTGTCGGC
i caeJap4.Scaffold4951 C 0 C 0

a score=-5304.000000
s ce10.chrX             2189384 53 + 17718866 -----------GCAAAGAAAAGGGCC----------------------CCCGGAAGTTGGAGAAAGTTGCAC-TCCGATA---------------TTTCTTT
s caeRem4.Crem_Contig0  4419808 61 +  4500979 -----------aaaaagaagagttct----GTTAAATGTGGGC----CCCCGGAAGTCTAAC-----TTCAC-TATCTCa---------------tctctt-
i caeRem4.Crem_Contig0 I 17 C 0
s caeSp111.Scaffold629 33121212 61 + 33334924 -----------aaagaaaagagttctCTGCGTCGAT--TAG-------CCCGGAAGTCGGAG-----TCCAAGTgccaaa---------------tttttt-
i caeSp111.Scaffold629 I 21 C 0
s caePb3.Scfld02_0      2930162 78 -  4147112 -----------gaaaagaagagttcTTTGAGTTGACAGGGG-------TCCGGAAGTCTAAG-----TCCAAGTGCCAAACTCAATGTCGCCCGCTTTTTC-
i caePb3.Scfld02_0     I 14 I 30
s caeJap4.Scaffold4951    88294 62 +   152553 AAAAGACGACAAAAGAAAAGAGTTCT--------AAGGCGGGCGTGTCTCCGGAAGTCGCTC-----TTCTTGTT---------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13663583 920 - 21540570 I

a score=-5055.000000
s ce10.chrX             2189437 28 + 17718866 CATTTACTCTCC-----CCAATGAAA-GATGCAC----
s caeRem4.Crem_Contig0  4419869 33 +  4500979 cattctttttctcgcATTCAATGAGA-GCACAAC----
i caeRem4.Crem_Contig0 C 0 I 16
s caeSp111.Scaffold629 33121273 16 + 33334924 catt---------gaaaccaAGGAG-------------
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    88356 23 +   152553 ---------------CATCAATGAAACGAAACatgaaa
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2930240 30 -  4147112 I
e cb4.chrX             13663583 920 - 21540570 I

a score=-34691.000000
s ce10.chrX             2189465 151 + 17718866 ---------AAAAAT-----------GCATCTTTTTCGGCTGA-----------------------------------CTCCCAGAATTTTTTGCTTATAATTGGATGC-----ACTTCATGAATAATTTTAGTTTCTCGGGCCCAC------------------------------------------------TAGCTTTGTCTCTTGACTTC---------------TAATT-----------AATATTCCACGAGGCTT-----TTCAGAGCAAATGCAA------------TTATTC
s caeRem4.Crem_Contig0  4419918 190 +  4500979 ----------aaaaa-----------ttctctttttcttttcattggGATTGGGAGGA--------------------CCCTGTGA---TCCGACCAACAGTTGGCAAA----AAGTtcatgaattatttt------tcaagctCAT--------------------ATGACATT--------------------CAATTAATTTTCGCCACACC-----------------AGTCgtttctaaa-tattttataGGGACCATCCGTCTGGAAGTTAATTGTCGTCTCTCTGGAAgtcattt
i caeRem4.Crem_Contig0 I 16 I 3
s caeSp111.Scaffold629 33121289 234 + 33334924 ---------AAGAgt-----------ctatcttttttttct--------tcattcgaattcttttctttcaacacACTCTCCATGA---TCCTTCCGCCAGTTGGTGGA-----AGTTCATGAATTATTGT------TGAGGCTCATATGAcattcaattaattttcat---------------------ttcaacaaTTATTTCTCGTTTCTTCCAAACTGAGTCACATGAATTCTTAGAATGA-AATAATCCAATAAAATTCTATCCGAGGAATAAATGCAG----TTCAGAAACCATCT
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2930270 232 -  4147112 ---------GAGAAt-----------tcatcttccttttttcattaggCTCATTCG----CTTTTCATTCGACTTGCTCTCCATGA---TCCTACCAACTGTTGGTTGG----TGGTTCATGAATTATTTT------CGA-GCTCAT--------------------ATGACtttcaattacattttatttcaaacaattatttttcttcccttt--gtttcatttccctcaatttttttcttccttgtGATCCCACGAAAAT------AGAGAATAATTGACT----TACGAAAACAGTTT
i caePb3.Scfld02_0     I 30 I 46
s caeJap4.Scaffold4951    88379 134 +   152553 gaaaagagaaagaatAGCATAAGTCatttgctttttctttt-------------------ccccCCTTTCGATTGAGTTCTTatga--------------attggaaaagaaaaaatacatgcCATGTTTT------TGGGAATAAT--------------------------------------------------------TCATGTGGTTTC-----------------ATTTTCT-------AACAttc-------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13663583 920 - 21540570 I

a score=-1064.000000
s ce10.chrX             2189616 12 + 17718866 TTAAAAATGTGA
s caeRem4.Crem_Contig0  4420111 11 +  4500979 -tcaactttctc
i caeRem4.Crem_Contig0 I 3 I 10
s caeSp111.Scaffold629 33121527 11 + 33334924 -ACGAATTGCAA
i caeSp111.Scaffold629 I 4 I 5
s caeJap4.Scaffold4951    88513 12 +   152553 aaagaaataaaa
i caeJap4.Scaffold4951 C 0 I 9
e caePb3.Scfld02_0      2930502 46 -  4147112 I
e cb4.chrX             13663583 920 - 21540570 I

a score=-226.000000
s ce10.chrX             2189628 70 + 17718866 TGAAACACAATAAAGT--------GCTCTTTTGCTCTTGCTTACTA---TGATATATTTTTTCTCCAAAAAAAATCTTGCG
s caeRem4.Crem_Contig0  4420132 52 +  4500979 AGTCTCTCAATTA--T--------GCTCTTTTGCTCTTTCTTGcc------cttctgtttttttt-------------gtg
i caeRem4.Crem_Contig0 I 10 I 9
s caeSp111.Scaffold629 33121543 42 + 33334924 TGTAACATAATTA--T--------GTACTTTTGCTCTTTCT----------------CGTTTCTC-------------CCG
i caeSp111.Scaffold629 I 5 I 4
s caePb3.Scfld02_0      2930548 47 -  4147112 TGTAACATAATTA--T--------Gtacttttgctcttttt-----------tctagtttttctc-------------gcg
i caePb3.Scfld02_0     I 46 I 4
s caeJap4.Scaffold4951    88534 62 +   152553 TGAAACAGAAAAC--TAGAGAAAagtattgttgttttttcccactcctttctttctttctttct-----------------
i caeJap4.Scaffold4951 I 9 C 0
e cb4.chrX             13663583 920 - 21540570 I

a score=22662.000000
s ce10.chrX             2189698 26 + 17718866 AATCTTTCATCT-T----------TGAAATTTGAAAC
s cb4.chrX             13664503 36 - 21540570 AATCTTTCATCT-TTGAAAATgagtgaaatttgaaac
i cb4.chrX             I 920 C 0
s caeRem4.Crem_Contig0  4420193 26 +  4500979 AATCTTTCatct-t----------tgaaatttgaaac
i caeRem4.Crem_Contig0 I 9 C 0
s caeSp111.Scaffold629 33121589 26 + 33334924 AATCTTTcatct-t----------tgaaattcgaaac
i caeSp111.Scaffold629 I 4 C 0
s caePb3.Scfld02_0      2930599 26 -  4147112 aatctttcatct-t----------tgaaattcgaaac
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951    88596 24 +   152553 -ttcttttttttct----------tgaaat--gaaAC
i caeJap4.Scaffold4951 C 0 I 57

a score=1919.000000
s ce10.chrX             2189724 27 + 17718866 GTCGTTTTTTTT--CTGTTGCTTCTCCGT
s cb4.chrX             13664539 24 - 21540570 -----tttttttttcactcttcttttttt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4420219 14 +  4500979 -----ttttttg----------ccTCCGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33121615 18 + 33334924 ----tttttttt-------gtgccTCCGT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2930625 17 -  4147112 -----ttttttt-------gtgccTCCGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88620 57 +   152553 I

a score=112054.000000
s ce10.chrX             2189751 166 + 17718866 TAAATTGAGCTGATTCGGAACTCC---------------CAGTAGC--ACATCTGGAAGATGCGCTCT---------TCAACTCCCTCGC--CTCGTTTTC----TCTGGCTCATTGCATCCTCC---TCACCGCCACACTGTGATCTTG----GCTCCTCTTTATCACCCTCTCAAGA---CGGGTCAAACCATATGATTGCTCGAA
s cb4.chrX             13664563 183 - 21540570 tcaatttagctCTTTCGGAACTCC---------------CAGTCGCCTACATCTggaaaacgcatttttcgatcaactcttctctctcacacttatttttattattttctctcgtttt-tccttt---cCGACACCACTC--TGATCTTG----GCTCCTTTTTATCACCCTCTCAAGAGATTGGATCGAACCATATGATTGCTCGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4420233 158 +  4500979 TAAATTGAGCTCTTTCGGAACTCC---------------CAGTTGC--ACATCTGGAAGATGCGCTCT---------CTCTCACTCCCTCAATCTCTTTTA-----CTCACTCATT------TTC---CCGCCACCACTC--TGATCTTG----GCTCCTCTTTATCACCCTCTCAAGA----CGGTCAAACCATATGATTGCTCAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33121633 164 + 33334924 TAAATTGAGCCCTTTCGGAACTCC---------------CAGTTGC--ACATCTGGAAGATGCGctct---------ttagttttctcattctctttttta----tctcactcatt------ttcttttcttcgccACTC--TGATCTTG----GCTCCTCTTTATCACCCTCTCAAGA--TCGGATCAAACCATATGATTGCTCAAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2930642 163 -  4147112 TAAATTGAGCTCTTTCGGAACTCC---------------CAGTTGC--ACATCTGGAAGATGCGCTCT---------TCAGCTCCcgtttctctctccttt----tctcacTCATT------TTC---CCGCCGCCACTC--TGATCTTG----GCTCCTCTTTATCACCCTCTCGAAGCTCCGGGTCAAACCATATGATTGCTCAAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    88677 164 +   152553 taatttGAGACGTTTTGGAACTCCCAGCTGCAGTCAGTTCAGTTGC--ACATCTGGAA-----GTTCT---------CTTGCTCATTCTC---------------TTGTGCTCTTT------TCC---ACTTTACCACTC--GTATCTTGGCTCGCTCCTCTTTATCACCCTCTCAAGA--CCGGGTCAAACCATATGATTGCTCGAA
i caeJap4.Scaffold4951 I 57 I 460

a score=7893.000000
s ce10.chrX             2189917 12 + 17718866 CTATTTCAAGAG
s cb4.chrX             13664746 12 - 21540570 ATATCTCAAGAG
i cb4.chrX             C 0 I 212
s caeRem4.Crem_Contig0  4420391 12 +  4500979 ATATTTCGAGAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33121797 12 + 33334924 ATATCTCAAGTG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2930805 12 -  4147112 ATATCTCAAGTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I

a score=7955.000000
s ce10.chrX             2189929 50 + 17718866 GCTGCTCAATCGTTTTTCGGCCCAA--ATTAATGTTTTG------AATTTTAGGAAAA-
s caeRem4.Crem_Contig0  4420403 47 +  4500979 GCAGCTGAATAGTTTTTGTGTCCGAGTATTTTTGTCTCT--GAGTC---------AAA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33121809 59 + 33334924 GCAGCTGAATAGTTTTTGTGTCCGATTATTATTGTCGGACTGTGTgactcttcagaaaa
i caeSp111.Scaffold629 C 0 I 156
s caePb3.Scfld02_0      2930817 56 -  4147112 GCAGCTGAATAGTTTTTGTGTCCGAGTATTATTGTCTGA--GTGTCACTCCTTAAAAA-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I

a score=648.000000
s ce10.chrX             2189979 7 + 17718866 TTGTTTG
s caeRem4.Crem_Contig0  4420450 7 +  4500979 TAGTCTG
i caeRem4.Crem_Contig0 C 0 I 222
s caePb3.Scfld02_0      2930873 7 -  4147112 GAGCCTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I
e caeSp111.Scaffold629 33121868 156 + 33334924 I

a score=608.000000
s ce10.chrX             2189986 22 + 17718866 CTGTTTTCCTTGGATTTTGTGT
s caePb3.Scfld02_0      2930880 21 -  4147112 GTGTTTTCA-TAAACTCTGTGT
i caePb3.Scfld02_0     C 0 I 97
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I
e caeSp111.Scaffold629 33121868 156 + 33334924 I
e caeRem4.Crem_Contig0  4420457 222 +  4500979 I

a score=0.000000
s ce10.chrX             2190008 762 + 17718866  
e caePb3.Scfld02_0      2930901  97 -  4147112 I
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I
e caeSp111.Scaffold629 33121868 156 + 33334924 I
e caeRem4.Crem_Contig0  4420457 222 +  4500979 I

a score=1045.000000
s ce10.chrX             2190770 31 + 17718866 CATCTGGACACCTTAAAACCCATTCATCTAA
s caePb3.Scfld02_0      2930998 31 -  4147112 CATCTGGATTCGTTCTAAACAATTTATCCAT
i caePb3.Scfld02_0     I 97 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I
e caeSp111.Scaffold629 33121868 156 + 33334924 I
e caeRem4.Crem_Contig0  4420457 222 +  4500979 I

a score=-1280.000000
s ce10.chrX             2190801 23 + 17718866 TGACTTTAAACTTTTATATTCAA
s caeSp111.Scaffold629 33122024 21 + 33334924 TGGATATAAACCAT--TATTCCG
i caeSp111.Scaffold629 I 156 C 0
s caePb3.Scfld02_0      2931029  2 -  4147112 ---------------------CA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I
e caeRem4.Crem_Contig0  4420457 222 +  4500979 I

a score=-1052.000000
s ce10.chrX             2190824 22 + 17718866 TCCTCCATCATTCTTTTCTTAA---------
s caeRem4.Crem_Contig0  4420679 27 +  4500979 tcctcc----atcatcatctcaacccccccc
i caeRem4.Crem_Contig0 I 222 C 0
s caeSp111.Scaffold629 33122045 22 + 33334924 -CCTCCTGAACCCATTGTTCCAT--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931031 22 -  4147112 -TCTTCTGAACCCATCGTTCCAA--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I
e cb4.chrX             13664758 212 - 21540570 I

a score=6034.000000
s ce10.chrX             2190846 15 + 17718866 CTCTCATCACCCATT-
s cb4.chrX             13664970 16 - 21540570 CTCTAATTACCTATCG
i cb4.chrX             I 212 C 0
s caeRem4.Crem_Contig0  4420706 15 +  4500979 cccccctcacCCATC-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122067 15 + 33334924 TTCTCATCATCCTCC-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931053 15 -  4147112 CTCTCATCACCCATC-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    88841 460 +   152553 I

a score=32250.000000
s ce10.chrX             2190861 132 + 17718866 AATAAAATA--ACAAATAGGCCGACGTTT---CGCG-----GTGCTATAAATTTAATCTAATGGCAAACACATTTTGCGG----GAAAA----CGGCGC---------GGTCTTTC--------GCTTTA------ATTCACCATCAGAAAAAAAGTAGAGGGCAAGTTG------AGT
s cb4.chrX             13664986 118 - 21540570 GGTAAGATAACACAAATGTGCCGACGTTTTGTCGCGAACtattaaaataaatttaatCTAATGGCAAACACATTTTGCGG----GAAAC---CGGGCACCCGCTGT--GTTACCCCTGG-------------------------------------------GGAAGTAA---------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4420721 131 +  4500979 GATAAAATA--ACAAATAGGCCGACTTTT----GCG-----TTGCTATAAATTTAATCTAATGGCAAACACATTGTGCGG----GAAAC------GTCCCCGTTCTTAGTTTTCGTTCG-----GTTTTA------AT---TTT-------------ACgtcggaagtgaaaatgaatt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122082 124 + 33334924 GATGAAATA--ACAAATAAGCCGACTTTT----GCT----------ATAAATTTAATCTAATGGCAAACACATTGAGCGA----GAAGC-AGGGAGCAC---------GTTTTACCGCGGTTTTGTTTAA------ATTCATTC-------------ACTTCGGAAATGA------ATT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931068 125 -  4147112 ATTAAAATA--ACAAATAGGCCGACTTTC----GCT----------ATAAATTTAATCTAATGGCAAACACATTGTGCGA----GAAACGAAAAGGCAC---------AATTTACCGCG-----GTTTAA------ATTCATTCACAAA--------ACGGCGGAAGTGA------ATT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    89301 156 +   152553 AATTAAATA--ACAAATAAGACGGGTTTGCGATGCGATTCGATGCGATAAATTTAATCTAATGGCAAACACATTGTGCGACGTTGAAAG-----Ggttc---------gtttttattttattccgtTCCATACGCGATTCGTTC-CACCTTACCATCACGACGCAAGTTT------AGT
i caeJap4.Scaffold4951 I 460 I 55

a score=10413.000000
s ce10.chrX             2190993  87 + 17718866 TCCTCCCGAAGGTATAGG----GTGGCTCATCTGTTTTGTTACAAACCGT--------------------TC------------------------T-TAT--AAAACCATCCAGCCGA-GTTGATTGTCACAGACAAC
s cb4.chrX             13665104  85 - 21540570 --------------------------CCTAGTGTTTTTGTCACCAATCTT-------------CTTTACTTC------TTACCCTCCTACTCACCCC-ACC--AAAACCATCCAGACCG----GGTTGTCACCGACA--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4420852 126 +  4500979 aCCAACATCAGGTATCTC----TTTGTGCAGTGTTTTTGTAACAAATCTTCAATtcatttctacttttcttc------tcctcctcctcctcgcACC-AACAGAGAACCATCCAGCCGG--GCGGTTGTCACCGACAAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122206 116 + 33334924 ACCTCCACCAGGTATAAT-----------AGTGGTTTCTTCACACACGTC----------TTCATCTTCGTCGACCCTATCTCCACCTCCTCGCACCAAAC--AAAACCATCTAGCAGAGAGCGGTTGTCACCGACAAC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931193 117 -  4147112 ACCCC--TCAGGTATCTTTCACTCCTTCCATTGTTTTTGTCACAAATCTT----------TTCCCTTACCTC--CCCTTTAACCTCCTCCTCACACC-AAC--AAAACCATCC-----AGAGCGGTTGTCACCGACAAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    89457  55 +   152553 I

a score=42594.000000
s ce10.chrX             2191080 83 + 17718866 ACTAACTATACAA--ATAA-CCACCCCCGCAAGAAGACGAGACGCCCTCGAGTACTTTTG-TGATCTTGC----------GTATG--GTGTTTTTTTCT
s cb4.chrX             13665189 87 - 21540570 ---AACTGTTCAA--ATAACCCGCCCCCGCTGCTAGAC--GACGCTTTCGAGTActttttgtgatcttcttgttgtgtatgtgt---gtgtttttct--
i cb4.chrX             C 0 I 90
s caeRem4.Crem_Contig0  4420978 65 +  4500979 ACTAACTGTACAA--ATAA-CCACCCCCGCTGGTAGACGAGACGCTTTTGAGTACTTTT--CTGTCTTCT-----------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122322 82 + 33334924 ACTAACTGTACAA--ATAA-CCACCCCCGCCAGTAGACGAGACGCTCTCAAGTACTTTTC-TGATATTGT----------Gtct---atgtttttttct
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931310 80 -  4147112 ACTAACTGTTCAAATATAA-CCACCCCCGCTGGTAGACGAGACGCTCTCAAGTACTTTTC-TGATCTTGC----------GTGT---ATGTTTTT----
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    89512 85 +   152553 TCTAACTGTACAA--ATAT-CCGCCCACGATGATAGGCGAAGCGTTTTCGAGCACTTTCT-TTATTACTC----------atctgttttgttttttttt
i caeJap4.Scaffold4951 I 55 C 0

a score=91.000000
s ce10.chrX             2191163 1 + 17718866 T
s caeJap4.Scaffold4951    89597 1 +   152553 t
i caeJap4.Scaffold4951 C 0 I 292
e caePb3.Scfld02_0      2931390 0 -  4147112 C
e cb4.chrX             13665276 90 - 21540570 I
e caeSp111.Scaffold629 33122404 0 + 33334924 C
e caeRem4.Crem_Contig0  4421043 0 +  4500979 C

a score=-19930.000000
s ce10.chrX             2191164 276 + 17718866 AATGTATTAGAATACATACTGAAATGCGCGCTAAAACAATATTTCTAAAAACACTCTTTATTCAGTTTTGGTACTTGTGTAGTTACTACAAAATATTTTTTGCAATTTTTGAAAAaaaaaagtaaactctttttgaattttaggcttaggaatagtcgtttctaagtcttagcagttctaagaatttcaaacaattagccccaaatgggcttaattgaacgaa----tttcaaaataaaatttctgtaaattttcttatatatttttatattgtttttag
s caeRem4.Crem_Contig0  4421043  66 +  4500979 --------------------------------------------------------------------------TTGtgta----------------------------------------------------tg---------------------tgttttt------------ttct-----------------------------gcgAAACTGAACGGATGAGTGGGATCATAAAAATTGTGTTAATTt--------------t------------
i caeRem4.Crem_Contig0 C 0 I 32
s caeSp111.Scaffold629 33122404  63 + 33334924 ------------------------------------------------------------------------------------------------------------------------------------------------------------cgcttCT------------CTTC-----------------------------GTTAAGCAGAATGGA----TAGAATTATAAAA--CATgttaatgt--------------tttttgttattag
i caeSp111.Scaffold629 C 0 I 17
s caePb3.Scfld02_0      2931390  61 -  4147112 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-----------------------------GCTAAGCTGAACGGA----TAGAATTATAAAA--CATGTTAATGTT--------TTTTGTAGTCGTGAACAA
i caePb3.Scfld02_0     C 0 I 31
e caeJap4.Scaffold4951    89598 292 +   152553 I
e cb4.chrX             13665276  90 - 21540570 I

a score=0.000000
s ce10.chrX             2191440 64 + 17718866 gacggttcaaaatttcgaaaaaaAAGTGGCCAAAATTGGAAATTTTAACTTAATTTTTTAAACT
e caePb3.Scfld02_0      2931451 31 -  4147112 I
e caeJap4.Scaffold4951    89598 292 +   152553 I
e cb4.chrX             13665276 90 - 21540570 I
e caeSp111.Scaffold629 33122467 17 + 33334924 I
e caeRem4.Crem_Contig0  4421109 32 +  4500979 I

a score=-6606.000000
s ce10.chrX             2191504 106 + 17718866 ATTTTCTACCGTATTTCTACCGTCATAGTAAAATTTCTATAACAATTTTGACAATTT----TCACCTAAAAACTCGTTTAATCGGGCAAATTTTGGGTCCGAGGA------TTCTG
s caeRem4.Crem_Contig0  4421141  70 +  4500979 GT---------------------CGT------------------ATTTTTACACCTCTGCTGTaaaaaaaaCTGCTGCACG-----CAAATGCTG--TTTGACGTTTACGTTTGTG
i caeRem4.Crem_Contig0 I 32 C 0
s caeSp111.Scaffold629 33122484  67 + 33334924 ATGGTCCCAcgcatttt-----tcat------------------atttt-acaACTC----CTACGATACGACTCCGCTAA-----CAAGCGTCG----------------TTGTA
i caeSp111.Scaffold629 I 17 C 0
s caePb3.Scfld02_0      2931482  51 -  4147112 -----------------------cat------------------attttcacaACTC---TTTACAACAAAACTTGACTAA-----CAAGCGTCC----------------TAGTG
i caePb3.Scfld02_0     I 31 C 0
e caeJap4.Scaffold4951    89598 292 +   152553 I
e cb4.chrX             13665276  90 - 21540570 I

a score=13108.000000
s ce10.chrX             2191610 147 + 17718866 CGTCTTATTAATGAAATTAGTCATTCATTAC----TTATTCATGCGCTCTTTCAAGTCAAACCAACT----------------------------------AGTGTCATT-TTC--------CGTCCTTCGCATTGTGTGCG-------ATTCA--AAAAACAACTCATATTATGTTTCA-TTTTTGAATAGACCCATGAAACG
s cb4.chrX             13665366 119 - 21540570 CGTACTACTAATGAAATTAGTCATCCGCTGCTTCATTATTCATG------------------CTCCC----------------------------------CCTTTGTCTGTTC--------CGGGCTACG--GTAGATATA-------AAACC--AAAAACATGCTTTCTTATGTTTCA---------TCTAGCTATG-----
i cb4.chrX             I 90 C 0
s caeRem4.Crem_Contig0  4421211 152 +  4500979 CGTACCACTAATAAAATTAGTCATCCATTAC----TTATTCATGCG------CTGGT----CCTCCCAGTCATAAGCTTCGGGGTTTTTTATTCACgatgttctgtttcaattc--------TGTTCTCCG--TTacagaag-------aaaac----aaacatgTCTTCTTATATTTCA---------TCTGG---TG-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122551 140 + 33334924 TATTCCACTAATGAAATTACTCATACATTAC----TTATTCATACAA--AACCACGT----GCTTCT----------------------------------ATTCTCACTGTTC--------TGTTCTATG--CTACAAAA--------ATTGCTTGAAAACATGTCGTCTTATGTTTCA-TGTTCCAATATAGACATGTAA-A
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931533 156 -  4147112 TGTACCACTAATAAAATTAGTCATATATTAC----TTATTCATACAACCCACCacgt----tttctc----------------------------------gttttcactGTTCCCTAATTTTGTTCTATG--TTACAGAAGAAGGAACATAAC---AAAACATGTCTTcttatgtttcattttttcaatatagaCATGTAA-G
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    89598 292 +   152553 I

a score=32921.000000
s ce10.chrX             2191757 154 + 17718866 ACACCCCCGC-------TTTTTGGTCTTC--------------CATTTGTGTC---TTGT-------TTTGTCTCACTCTCTAAA-TTGT----AGTAGTAATAGCA---CGCCCG--CGCTTATTAGAAATTGTAGC-----------------AATTCC------GGAAAAAG-GATCTAAGAAGAAGTGGGGCACTGCAAATATTTT-----TATAAATAG----
s cb4.chrX             13665485 142 - 21540570 ACACCCCCGC-----AGTTTTATATTTCC-------------------GTCTCCATTTTTCGACATATTTgt----gtcttgaaattttttccccgT---------A---CGCCCG--CGCTCATTAGAAATTGTAGC-----------------AGTTTA------AGAAGAGGGAGCCGCAGAA-------------ACAGACGGCGCCGCTATATGA--------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4421363 160 +  4500979 ACACCCCCGC-----CtttttttGCTTCCTACTTCTGC----TTCTCAGTTTCCG-TTTTCGACATATTTGTCTCAGTCTCAAAAATTGT----AGT---------A---CGCCCG--CGCTCATTAGAAATTGTAGC-----------------AGTTCA------GGAAAGAGCAGCCTGAGCACTAGTATG----TCCAGACGGCGC-----TATGA--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33122691 164 + 33334924 ACACCCCCGCGCCTTCGTTTTCAAGCttc---atcttg----ttttttatttc---gctTCGGCATATTTGTCTCAGTCTCAAAA-TTGT----AGT---------A---CCCCCGCACGCTCATTAGAAATTGTAGC-----------------AGTTCA------GGAAGGAG-CCACCAAGCACTAGTGTGTGTATCCAGACGGCGc-----tacag--------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931689 148 -  4147112 ACACCCCCGC-----CTTTTTTGAgctac---ttc-------ttttttgtttccg-tcTTCGACATATTTGTCTCAGTCTCAAAA-TTGT----AGT---------A---CGCCCG--CGCTCATTAAAAATTGTAGC-----------------AGTTCA------GGAAGGGG-AGCCGGGGCACTAGTG------TCCAGACGACac-----tac----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    89890 177 +   152553 ACACCCCCGC------TTCGTTTCGTTCC---GTCCACGCCTATATTTGTCTT---TTCTCGCT-------TCTCCGTC-CGAAA-TTGT----GAT---------ACGCCGCCCG--CGCTCATTAAAAATTGTAGTGTTATGAAAGTAGTAGGAGTTCATCGTCTGGAGAAGG-ATTCGTAGAAATAAGCAC----TCCAAA-AGTGG-----TATAA----ATAG
i caeJap4.Scaffold4951 I 292 I 75

a score=3853.000000
s ce10.chrX             2191911  89 + 17718866 CGAGAAATA-TATATATATA------CACTT---GTCAACCCCCGCATT----CGTCGTAGATTTGAAATCTGAA-----ATAATTTGAGAAGAA-----------AAG---------------------------------------TTGTTATCCT------
s cb4.chrX             13665627 113 - 21540570 --AAATATCTTATAAATAGACTTTGTCTCCTCCCCTCGACGCCCCCACT-------Cgca---ttcaaatttgaagtagTATAAATTTCAAGTCTTGTCTAAATTCAAA---------------------------------------TTAgtatttttctcct
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0  4421523 142 +  4500979 --AAATATGTTATAAATAGA------CCCTTTACATCTCCGCCCACACT-TTACAACGTA---TTCAAATTCAAC----TATAAATTAGA------gtcggaattcaaaaatgaactagAAAACTCTgcatttcagaaaagagaaattttaaaattctaatCCT
i caeRem4.Crem_Contig0 C 0 I 44
s caeSp111.Scaffold629 33122855  93 + 33334924 --aaaaatattataaataAA------CTCTTCGCGTATCCGCCCCCTCT-TCACGGCATA---TTCAAATTCGAG--TATATAAGGTGAAGAtg------------gaa---------------------------------------tttaaatttt------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931837 105 -  4147112 --aaaaataatataaatagA------CTCCTCGCTTCTCCGCCCCCACTCCCACTTTGTA---TTCAAATTTGGA--AGtataaattgaaattga-attttaattcgaa---------------------------------------tttcaatttc------
i caePb3.Scfld02_0     C 0 I 3
e caeJap4.Scaffold4951    90067  75 +   152553 I

a score=-3309.000000
s ce10.chrX             2192000  1 + 17718866 -----------------------G
s cb4.chrX             13665741 24 - 21540570 tctcaAATGCTtaagaatccagaa
i cb4.chrX             I 1 C 0
s caeSp111.Scaffold629 33122948  6 + 33334924 ------------------ttgcaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2931945  6 -  4147112 ------------------atctag
i caePb3.Scfld02_0     I 3 C 0
e caeJap4.Scaffold4951    90067 75 +   152553 I
e caeRem4.Crem_Contig0  4421665 44 +  4500979 I

a score=-11201.000000
s ce10.chrX             2192001 38 + 17718866 ---------TTCAGTT------------TGTCTATCTT----ATAAGAGCT------------------------TTCTTCTACTCC
s cb4.chrX             13665765 52 - 21540570 ---------tccagaa------------ttcagaaactga-aacaaaaaac-------------cgGAAGTTTTGTTCTTCCCATTC
i cb4.chrX             C 0 I 46
s caeSp111.Scaffold629 33122954 39 + 33334924 ---------ttttttc------------ttctcaaattga-aataaaagat--------------------------CCCTTGAGTC
i caeSp111.Scaffold629 C 0 I 21
s caePb3.Scfld02_0      2931951 65 -  4147112 ---------tTTTGCC------------TGTTTGGTCAGG-aaaaaaaGCtataaggaagaagaaaaacattataTGCTTTTGcatc
i caePb3.Scfld02_0     C 0 I 16
s caeJap4.Scaffold4951    90142 54 +   152553 TTCGGTAGTTTTCGTCGTTTAAGTGCTTTGCTTGAATTAATAATAAAACAC---------------------------------ATC
i caeJap4.Scaffold4951 I 75 C 0
e caeRem4.Crem_Contig0  4421665 44 +  4500979 I

a score=24792.000000
s ce10.chrX             2192039 600 + 17718866  
s cb4.chrX             13665863 535 - 21540570  
i cb4.chrX             I 46 C 0
s caeRem4.Crem_Contig0  4421709 698 +  4500979  
i caeRem4.Crem_Contig0 I 44 C 0
s caeSp111.Scaffold629 33123014 637 + 33334924  
i caeSp111.Scaffold629 I 21 C 0
s caePb3.Scfld02_0      2932032 689 -  4147112  
i caePb3.Scfld02_0     I 16 C 0
s caeJap4.Scaffold4951    90196 671 +   152553  
i caeJap4.Scaffold4951 C 0 I 43

a score=-3565.000000
s ce10.chrX             2192639 16 + 17718866 -----------AAAGACAAAAAGTCCT
s cb4.chrX             13666398 24 - 21540570 CTGCTTCT---AAAACGTCTTCGTTTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4422407 23 +  4500979 tttctggg---aaaaaaac-TCTCTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33123651 27 + 33334924 ctctttcactcAAACgaatttctcctt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2932721 22 -  4147112 ttcttg-----agaagaatgtcttctt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    90867 43 +   152553 I

a score=304324.000000
s ce10.chrX             2192655 341 + 17718866 TTTCAGGAAGTGGGCAAATTGTCCATTGACGCAGAGGAGAAGCGCAGCAAGGAATGGTTAGAAATGCCATGTGCTGAAGGAATGCTTTCTCTAAAGTTAACCCTCTGGCAAGATCTCCTCAAGGGTATCAATTCGGTCTTTCACGGTCAAGTCAGAGTTGACGTTGACGAGAACTGGAAGTCCGGTCCGGCAAAGTGGTTCTACCTGCGCTCCAAAGCTAATGAAGACGGAGAAGGTGGCGAAGACGGAGGT-GATATCGGAGACGCCACTGTGAAAGTGACCTATCAAATTGATCATATACTACGTATGCAAGTATACAAGTGAGTTT---TTACTG-TATGTTT
s cb4.chrX             13666422 341 - 21540570 TTCAAGGAAGTCGGCAAGCTACCCATTGACACAGAGGAGAAGCGCAGCAAGGAATGGTTAGAGATGCCATGTGGTGACGGAATGCTCTCGCTGAAGTTTACGCTGTGGCAGGATCTTCTAAAGGGTATGAACTCAGTTTTTCACGGACAAGTTCGCGTCGACATTGACGAGAATTGGAAGTTGGGACCAGCCAAGTGGTTCTATCTGCGACCGAAGGGTCAAGAGGAGACCGACGGTGG----GAAAGTGGAGGAGATTGGTGAGATCACGTTGAAGACTACCTATCAGGTGGACCATATTCTCAAGATGAAGTATTACAAGTGAGTTTGACGTTTCT-TGGATTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4422430 342 +  4500979 TTTTAGGAAGTGGGCAAGCTGTCCATCGACGCTGACGAAAAGCGAAGCAAGGAATGGTTAGAAATGCCATGTGCTGAAGGAATGCTCTCGTTAAAATTGACTCTCTGGCAGGATCTCCTAAAGGGCatcaattcagtttttcacggTCAAGTTCGAGTTGACGTGGACGAGAACTGGAAGTCTGGACCAGCTAAGTGGTTCTACTTGCGTGCGAAAACTAATGAGGAAGGTGATAGTGGTGAAGAAGGTGGA-GATATTGGAGAAGTCACTTTAAGAACCACCTATCAAATTGATCATATTCTACGCATGCAAGTGTACAAGTGAGTTT---ATTTCTATAACCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33123678 340 + 33334924 ttttagGAAGTGGGCAAGCTGTCCGTCGACGCTGAAGAAAAGCGCAGCAAGGAATGGTTAGAGATGCCATGTGCTGAAGGAATGCTCTCGTTAAAATTGACTCTCTGGCAGGATCTCCTCAAGGGTAtcaattcagtttttcacgGCCAAGTTCGAGTTGACGTTGACGAACACTGGAAGACCGGGCCGGCGAAGTGGTTTTACTTGCGCTCAAAAGCTaatgaagaaagtgaagGTGGTGAAGAAGGTGCT-GATATTGGAGAAGTCACTTTGAGAGCTACTTATCAAATTGACCATATTCTACGTATGCAAGTCTACAGGTGAG-CT---ATAATC-TGAGAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2932743 341 -  4147112 ttttaggAAGTTGGCAAGTTAGCCATCGACGTTGAGGAGAAACGCAGCAAGGAATGGTTAGAAATGCCATGTGCTGAAGGAATGCTCTCGTTAAAGTTGACTCTCTGGCAGGATCTCCTCAAGGGTATCAATTCAGTATTCCACGGTCAAGTTCGAGTTGACGTCGACGAGCACTGGAAGACCGGACCGGCTAAGTGGTTCTATTTGCGGTCAAAAGCTAATGAAGAAGGGGACGGCAGTGAAGAAGCTGGT-GATATCGGAGAAGTCACTTTGAGAACTACCTATCAAATCGATCATATTCTACGTATGCAGGTTTATAAGTGAGTTT---ATATTG-TCATCTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    90910 338 +   152553 TTTAAGGAAGTGGGCAAGCTATCCATTGACGCAGAAGAGAGGCGCAGTAAGGAATGGTTAGAGATGCCATGTGTTGAAGGAATGCTTTCATTGAAGCTGACTCTTTGGCAAGATCTCCTCAAAGGTATTAACTCGGTTTTCCACGGACAAGTGCGTGTCGACGTCGACGATCATTGGAAATCTGGACCCGCAAAGTGGTTCTATTTGCGTTCCAAGGCTAATGAAGACGGCGATTCGTCCGAAGAAGGTGGA-GATATTGGAGAAGCTACTGTAAGAGCTACCTTCCAAATTGATCACATTCTACGGATGCAAGTTTATAAGTACG------Atagtg-tattttt
i caeJap4.Scaffold4951 I 43 I 28

a score=-3849.000000
s ce10.chrX             2192996 3 + 17718866 AAA--
s cb4.chrX             13666763 2 - 21540570 CA---
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4422772 5 +  4500979 CAAAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33124018 4 + 33334924 TGAT-
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2933084 4 -  4147112 TGAA-
i caePb3.Scfld02_0     C 0 I 20
e caeJap4.Scaffold4951    91248 28 +   152553 I

a score=599.000000
s ce10.chrX             2192999 17 + 17718866 ACTTAAATT--AACGTACT
s caeRem4.Crem_Contig0  4422777 17 +  4500979 ATATGAACA--AATGTATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33124026 19 + 33334924 TCTTGATCATGAATGTATT
i caeSp111.Scaffold629 I 4 C 0
e caePb3.Scfld02_0      2933088 20 -  4147112 I
e caeJap4.Scaffold4951    91248 28 +   152553 I
e cb4.chrX             13666765  0 - 21540570 C

a score=191.000000
s ce10.chrX             2193016 2 + 17718866 CA
s caeRem4.Crem_Contig0  4422794 2 +  4500979 CA
i caeRem4.Crem_Contig0 C 0 I 17
e caePb3.Scfld02_0      2933088 20 -  4147112 I
e caeJap4.Scaffold4951    91248 28 +   152553 I
e cb4.chrX             13666765 0 - 21540570 C
e caeSp111.Scaffold629 33124045 0 + 33334924 C

a score=-3678.000000
s ce10.chrX             2193018 460 + 17718866 CTATCAGAAGGGAACATTTTTAAAATTTCTACGGTTTTTTAATACTTcacgtgcactcagaaagtcccattttgctttgatcttcgaaaaatgcggaaagtgagtcgcagacatctcatccgattttgcacggttaagagcgcgctgacgacacaatttttctggtaattaattcccgctttctcttgtagatcaaactgtaatgagacagcctgacaccacgtgCAACTTATATATTTTTACTGCGTTTCAATGGTCCGTATTAAAGCGTTTgggatattgctctgaaacatgcgtatgacaccataataaaaaaataATTTCTTCAACTTTTTTTTTGAAAATTAGAAAAAACTTATTTTGCCACTTTTTTCAAAGTCGTTGATCAAAAAAGTGCCGGCAAATTTTAAGGTCTACTTA-TGGCAGTTCGATAATTTCGGAAAAAGTGACCAAAAATCTG
s cb4.chrX             13666765 270 - 21540570 -TGTTAgtaaagaa-atttttg---------------------acttca----aacttagaaaatattttattcctAAAATTTCCCCAAAACCT---------GTCATAGAACGGTCCTGTAACTTTAAAC---TCTGAGCG------------AAtatatc------ttgattcctgt-------------taaaact---atgaaaaagtttaaacCGAC---------AAAtgtttt--------------------------------------------------------------accataatatcaaaaacattttatc--------tatTGACAA------------TATTTCGATATCTTGTACA-----GCggccaagaaaaattacatCAAACTTTacgacccttctattagaggtttcacAGTTCA----------------------
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2933088  20 -  4147112 I
e caeJap4.Scaffold4951    91248  28 +   152553 I
e caeSp111.Scaffold629 33124045   0 + 33334924 C
e caeRem4.Crem_Contig0  4422796  17 +  4500979 I

a score=-867.000000
s ce10.chrX             2193478 29 + 17718866 TTATCCCCTATTTTAGTGGGAATATTAAA
s cb4.chrX             13667035 13 - 21540570 ----TTCCTTCCATTTT------------
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2933108 29 -  4147112 ttatttcttattatttcgaaactgaaaaa
i caePb3.Scfld02_0     I 20 I 6
e caeJap4.Scaffold4951    91248 28 +   152553 I
e caeSp111.Scaffold629 33124045  0 + 33334924 C
e caeRem4.Crem_Contig0  4422796 17 +  4500979 I

a score=-654.000000
s ce10.chrX             2193507 3 + 17718866 -TTG
s caeRem4.Crem_Contig0  4422813 2 +  4500979 -tt-
i caeRem4.Crem_Contig0 I 17 C 0
s caePb3.Scfld02_0      2933143 2 -  4147112 -tt-
i caePb3.Scfld02_0     I 6 C 0
s caeJap4.Scaffold4951    91276 3 +   152553 ttc-
i caeJap4.Scaffold4951 I 28 C 0
e cb4.chrX             13667048 0 - 21540570 C
e caeSp111.Scaffold629 33124045 0 + 33334924 C

a score=189622.000000
s ce10.chrX             2193510 205 + 17718866 CAGGCCACTTCTCGATCTTCTCTTTCTCGCTGGGGACGTTCAACCATTGACAGCATCACTTGTGGCTGTTATTGAAGCACTTCCAAAAGTCGAGCTGGGACCAGTTTCTCGATCTTTGGTTGAACTTATGGCTCAGTCGGATCGTATTCGACCGGTGCTCAGTTCGCTTTACGTCAATAGCATCCTGAAGTGCCAGTGAGTAATT
s cb4.chrX             13667048 205 - 21540570 CAGACCTCTTCTGGATCTTCTTTATCAATCCGGAGAAGTCCAACCACTTACCGCTTCCCTTGTCGCTGTTATTGAGTCGCTTCCCAAAGTGGAGCTCACCCCGATATCTCGTTCTTTGGTTGAACTTCTCGCCCAAACCGATCACATTCGCCCGGTTCTCAGCTCGCTCTACGTCAACAGTATCTTGAAATGCCAGTGAGTCACT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4422815 205 +  4500979 cagaccaCTTCTCGATCTCCTCTTCTCGGCTGGAGATGTTCAACCACTCACGGCATCACTTGTTGCTGTCATTGAAGCTCTTCCGAAGGTTGAACTCGGACCAGTATCCCGTTCTTTGGTTGAACTCATGGCACAAACGGATCGTATTCGTCCAGTTCTCAGCTCTCTCTACGTCAATAGTATCTTAAAGTGCCAGTGAGTCATT
i caeRem4.Crem_Contig0 C 0 I 34
s caeSp111.Scaffold629 33124045 205 + 33334924 CAGACCACTTCTCGATTTACTCTTCTTATCCGGAGATGTTCAACCACTTACTGCTTCCCTTGTCGCTGTCATTGAATCTCTTCCAAAAGTGGAATTGGGCCCAGTTTCCCGTTCTCTGGTTGAACTCATGGCCCAATCGGATCGTATTCGTCCTGTGCTCAGCTCTCTCTACGTAAACAGTATCTTAAAGTGCCAGTGAGTCATT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2933145 205 -  4147112 caGACCGCTTCTCGACCTTCTCTTCTTGGCTGGAGAAGTCCAGCCACTCACTGCTTCTCTTGTCGCAGTGATCGAGTCTCTTCCAAAAGTTGAGTTGGGACCAGTTTCCCGTTCTCTAGTTGAACTCATGGCCCAATCGGATCGTATTCGTCCTGTGCTCAGTTCTCTCTACGTAAACAGTATATTAAAGTGCCAGTGAGTCATT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    91279 205 +   152553 tagacctCTTTTGGATCTTCTATTTCTTTCGGGAGATGTCACACCTCTTACCGCTTCTCTTGTGGCAGTAATTGAAGCTCTACCAAAGGTCGAATTAGGACCAGTTTCACGATCTTTGGTTGAACTCATGGCCCAATCAGAACGAATTCGCCCGGTTCTAAACTCTCTCTACGTAAACAGTATCCTAAAGTGCCAGTGagtaatt
i caeJap4.Scaffold4951 C 0 C 0

a score=-3986.000000
s ce10.chrX             2193715 40 + 17718866 -----TCACACAATGTGCGGGAA--GTTT--------AATTTTTTTTTTCGAATT----
s cb4.chrX             13667253 34 - 21540570 -------GTACAATTAGGCAAAG--ACAA--------AATAACTATCTT----TT----
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33124250 36 + 33334924 -------GTTCAATTAGACACAAAGAGTA--------ACTTGTGATTTG----TT----
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2933350 34 -  4147112 -------GAACAATTAGGCACAA--ATCA--------AATTGTGATTTG----TT----
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951    91484 53 +   152553 tttcatttttcacattaacgaaa--atcatatttatgaatgattatttt----ttaatt
i caeJap4.Scaffold4951 C 0 I 5
e caeRem4.Crem_Contig0  4423020 34 +  4500979 I

a score=467553.000000
s ce10.chrX             2193755 794 + 17718866  
s cb4.chrX             13667287 688 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4423054 787 +  4500979  
i caeRem4.Crem_Contig0 I 34 C 0
s caeSp111.Scaffold629 33124287 777 + 33334924  
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2933385 793 -  4147112  
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951    91542 746 +   152553  
i caeJap4.Scaffold4951 I 5 I 30

a score=-3873.000000
s ce10.chrX             2194549 28 + 17718866 CAAAAACTATCTACaatttattatttta
s caeRem4.Crem_Contig0  4423841 19 +  4500979 T-----TTACC--GTATTC--TCCAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33125064 21 + 33334924 T-----CTACT--AATTTCATTCCGGTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2934178 19 -  4147112 T-----CTATC--CAGTTTGTTGTGG--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    92288 30 +   152553 I
e cb4.chrX             13667975  0 - 21540570 C

a score=441648.000000
s ce10.chrX             2194577 825 + 17718866  
s cb4.chrX             13667975 746 - 21540570  
i cb4.chrX             C 0 I 139
s caeRem4.Crem_Contig0  4423860 826 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 29
s caeSp111.Scaffold629 33125085 816 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2934197 850 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    92318 813 +   152553  
i caeJap4.Scaffold4951 I 30 C 0

a score=7987.000000
s ce10.chrX             2195402 21 + 17718866 AAC-------------AATAATA-AGGCATAATTC
s caeRem4.Crem_Contig0  4424715 19 +  4500979 ----------------AACAATAGGGGCATAATTC
i caeRem4.Crem_Contig0 I 29 I 126
s caeSp111.Scaffold629 33125901 34 + 33334924 aactcaaaatgatACGAATAATA-GGGCataattt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935047 26 -  4147112 AAC--------ATACGAATAATA-GGGCATAATTA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    93131 17 +   152553 -----------------ATAGTA-GGGCATAATTC
i caeJap4.Scaffold4951 C 0 I 107
e cb4.chrX             13668721 139 - 21540570 I

a score=1656.000000
s ce10.chrX             2195423 27 + 17718866 CAAAATTCACAACTCATAATGTTACCT
s caeSp111.Scaffold629 33125935 25 + 33334924 taatatt--caaaCCATAATTCCACTT
i caeSp111.Scaffold629 C 0 I 67
s caePb3.Scfld02_0      2935073 25 -  4147112 CATTATT--CCGTCCATAATCTGACCC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    93148 107 +   152553 I
e cb4.chrX             13668721 139 - 21540570 I
e caeRem4.Crem_Contig0  4424734 126 +  4500979 I

a score=91.000000
s ce10.chrX             2195450 1 + 17718866 A
s caePb3.Scfld02_0      2935098 1 -  4147112 A
i caePb3.Scfld02_0     C 0 I 67
e caeJap4.Scaffold4951    93148 107 +   152553 I
e cb4.chrX             13668721 139 - 21540570 I
e caeSp111.Scaffold629 33125960 67 + 33334924 I
e caeRem4.Crem_Contig0  4424734 126 +  4500979 I

a score=0.000000
s ce10.chrX             2195451 735 + 17718866  
e caePb3.Scfld02_0      2935099  67 -  4147112 I
e caeJap4.Scaffold4951    93148 107 +   152553 I
e cb4.chrX             13668721 139 - 21540570 I
e caeSp111.Scaffold629 33125960  67 + 33334924 I
e caeRem4.Crem_Contig0  4424734 126 +  4500979 I

a score=464.000000
s ce10.chrX             2196186 5 + 17718866 TTTTG
s caePb3.Scfld02_0      2935166 5 -  4147112 TTTTG
i caePb3.Scfld02_0     I 67 C 0
e caeJap4.Scaffold4951    93148 107 +   152553 I
e cb4.chrX             13668721 139 - 21540570 I
e caeSp111.Scaffold629 33125960 67 + 33334924 I
e caeRem4.Crem_Contig0  4424734 126 +  4500979 I

a score=311.000000
s ce10.chrX             2196191 2 + 17718866 TG
s caeRem4.Crem_Contig0  4424860 2 +  4500979 TA
i caeRem4.Crem_Contig0 I 126 C 0
s caePb3.Scfld02_0      2935171 2 -  4147112 TG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    93148 107 +   152553 I
e cb4.chrX             13668721 139 - 21540570 I
e caeSp111.Scaffold629 33125960 67 + 33334924 I

a score=2730.000000
s ce10.chrX             2196193 3 + 17718866 TAT
s caeRem4.Crem_Contig0  4424862 3 +  4500979 TAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33126027 3 + 33334924 TAT
i caeSp111.Scaffold629 I 67 C 0
s caePb3.Scfld02_0      2935173 3 -  4147112 TAT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    93255 3 +   152553 TAT
i caeJap4.Scaffold4951 I 107 C 0
e cb4.chrX             13668721 139 - 21540570 I

a score=42028.000000
s ce10.chrX             2196196 146 + 17718866 GACATAATAA----------TGCCCTTACCATCCCCGTAGTAGCCGGTGCGCATATC-AAATCGATCTTAAAGCTC---TTGTGAT--TC-AAACCGTTTTTCCCTATTCTGACCAAAGTGTTATAATAC---AA-GCCAAAAATTCCCTT----TAACAAAACCCCACCT-----
s cb4.chrX             13668860 143 - 21540570 GACATAATAGCTCCCCCTTCCATACATTTTTTC----CAGTAGCCGGTGCGAATTTA-AAATCGATCTTAAAG-ACATTTTGTGAT--TC-------TACACCAC----CCGACCAAAGAATTACATCAAAACATATATAAAGTTGCAC---------CCAAACCATTCCA-----
i cb4.chrX             I 139 C 0
s caeRem4.Crem_Contig0  4424865 150 +  4500979 GACATAATAG---ACCATCCCGAACATACCCTC--TGTAGTTGCCGGTGCGCATATC-AAATCGATCTTTAAA-AC---TTGTGAT--TC-AAACCGTTTTCCCC----CCGACCAAAGTGTTCCACCAAAAGAC-TATGAGAAAACACTT-TTATTATCAAGCACTTC-------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33126030 153 + 33334924 GACATAATAG--TTTACCCCCGACTGTTCCACCCCTTTAGTAGCCGGTGCGCATATCCAAATCGATCTTGAAA-TC---TTGTGAT--TC-AAACCGT--TCCTC----CCGACCAAAGTGTTCAACCAAATGAA-ACTAACACGGCACTTATTATTGTCATGCTCTTC-------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935176 152 -  4147112 GACATAATAGAACCTTTCCCCGACCATTTTACCCCCGTAGTTGCCGGTGCGCATATCTAAATCgatcttgaaa-tt---ttgtgataaCC-AAACCGT----CCC----CCGACCAAAGTGTTAAACCAA---AA-AGTAATAACGCACCTTTTCACGTCATACACTTT-------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    93258 139 +   152553 GACATAATAG-------------GCCACCAATCCCTATAGTAACCGGTTCGCATATC-AAATCgatcttgaaattt---ttgtgat--tCAAAACCGT-----TC----CCGACCAAAGTGTTACAACCA---AA-ATTAACCTGACATTC---TTTGTCATGCACCCT--GACAT
i caeJap4.Scaffold4951 C 0 I 22

a score=-159.000000
s ce10.chrX             2196342 11 + 17718866 AATGGTAACTG
s cb4.chrX             13669003  6 - 21540570 AAC-----TTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4425015  6 +  4500979 AAC-----TTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33126183  3 + 33334924 --------CTC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935328  3 -  4147112 --------TTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    93397 22 +   152553 I

a score=2356.000000
s ce10.chrX             2196353 128 + 17718866 TCATACT-------TCACTTATCATAGTAT---TTTGT--CCAGGCCAGACTTATGCCATACCCCCTCA-AACCTGTTATATTTTGTTTCAAT-GTACCGATCTC---A----CAATCATATGCTT-GTTGTTCAA--TTCATTTCTT-------------------------------------------------TCTC
s cb4.chrX             13669009 183 - 21540570 CCGAAAA-----CAAGACTCACTGTAGTATTACTTTTTGCCCAGGCCAAAGCTACGCCATCAACA--ACAAACCTGtta--ttttttcacagt-ttctcgatctcgaaa----aatttttcacccc--ACAAAAAC--TTCCTTTCCCATTAAAGAATAACTATATTTGTCTCTTCctacaaaaatccaaaaatccctTTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4425021 143 +  4500979 ACACCTT-----CTTCTCTCATCATAGTAT---TTTTCACCCAGGCCAAAGCTACGCCATAAACA--AC-AAcctgtta--ttttt---cagc-ttgtcGATCTCacaacttgaattttt---------tgataat--tgcTTTCCTC--------GAAACCGT-----------------aaactctgaaa-----tttg
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33126186 134 + 33334924 CCACTTTGCCCTTCTCTCAAATCATAGTAT---TTTTC--CCAGGCCAAACCTACGCCATAAACA--AA-AACctgtta--ttttttttcagt-ctacCGATCTC---G----AATTCGCTTCCCT-CCTGATGTT------TCCCTT---------------------------------AAACCTT---------TTCT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935331 130 -  4147112 CCGCTCT-------TCTCACAACCTAGTAT---TTTTCTACCAGGCCAAAGCTACGCCATAAAC----A-AACctgtta---tatttttcatt-ttcaagatcTCTTAA----AAACCGCTTCCTT---TGATGTT--TTC-TTCCTT---------------------------------AAGCTCT---------TTTA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    93419 122 +   152553 TCACACT-------TCTCTAATTCTAGCAT---TATTT--CCAGGCCAATGCTATGCCATACTA---CA-AATCTGTTC---TATTTTTCAGTGTTCATGATCTC---A----gactttttgctttttttgctcttcATTATTTCCTC-----------------------------------------------------
i caeJap4.Scaffold4951 I 22 I 30

a score=-12582.000000
s ce10.chrX             2196481 47 + 17718866 TGCAAAATT-------------ATATGA------ACCGTCATTATT----TTTTGAAATGGG------------TTTT---------AGAA
s cb4.chrX             13669192 70 - 21540570 TTTGAATTCCAACATATATTTGTCAATGCTTTCAAATGTGCTTCTCGgaataaataaatgaa------------ttta---------TGAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4425164 70 +  4500979 ttgaaatat-------tGTCTGATAAAAC-----AAAATGATTCCACGAATAAAGATTTGAATACAATCTCCTGTTTA---------TTAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33126320 63 + 33334924 CGCAAACTT-------TGCTTCATAA-A------ATTGTCATTCTT-CTACaatgaattgaa------------ttta-tttGGTATTTTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935461 66 -  4147112 TAAAAACCT-------TATTCCGCGATG------ATTGTCATGcttaagaaaatgaaaccaa------------tttatttttgaattggc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    93541 30 +   152553 I

a score=85927.000000
s ce10.chrX             2196528 210 + 17718866 ACATTTATTT------GAAGAATATAGATTGTCTAAAAAACAATAC----------AGAATAAAA----ACAA---------TAACGCCATCCCCGTCTACGCTAATAAATTCGGGGTTATCGCATCAGAAATTGCCAGAGACGTTTGAAGAGTTAGACGAGCACATTCTTGTCCAATTTGGAGAGATTCGACGACTGTTTTGTTATGAGCCAATCCAGCAATTACTCCACTGTTGAAA
s cb4.chrX             13669262 167 - 21540570 ATATATTTT--------------ATTGGT---------GGCATT-------------------AA----AT--------------------------TTAAGCTAATAAATGCGAACTGATTCCTTCAGAAACCGCCAATGAAGTTTGGAGAGTGAGACGAGCGCATTCCTGGCCAATTTGAAGGGATTCAACGACTGACTTGTTATGTACAAGTCCAGCAATCACTCCACTGTTGAAA
i cb4.chrX             C 0 I 312
s caeRem4.Crem_Contig0  4425234 192 +  4500979 ACATAGTTTC-----CACAGGACATAGAT---------AACAATAC----------AACTTGAAA----ATAA-------------------CATAATTATGCCAATAGATGTGAACTGATTGCTTCAGATGCAGCCAATGTTGACTGGAGAGTGAGCCGAGCGCATTCCTGGCCGATTTGAAGAGATTCGACAACTGTTTTATTATGGACCAAACCCGCAATAACGCCActgttgaaa
i caeRem4.Crem_Contig0 C 0 I 48
s caeSp111.Scaffold629 33126383 184 + 33334924 GTGTTGCTTT-----------------------------ACTACACgttg--aaa-aactggaaa----aaaa-------------------ctagattaTGCTAACAATTGAGGACTAATTGCATCAGAAGCTGCGAGAGTTGTTTGAAGAGTTAGACGAGCACACTCCTGACCAACTTGCAGAGATTCTACAACTGTCTTGTTATGAACAAGTCCAGCAATCACGCCACtgttgaaa
i caeSp111.Scaffold629 C 0 I 46
s caePb3.Scfld02_0      2935527 208 -  4147112 GTGttttttt-ATATTAAGAGATTCAGAT---------AATAATACAGTG--AAATTacgagaaaagagaaaa-------------------ctagaTTATGCTAACAAGTGAGGCGTGATTGCTTCGGAAGTGGCGAGTGTGGTTTGAAGAGTAAGACGAGCACATTCCTGTCCAATTTGGAGAGCTTCTACCACAGTCTTGTTATGAGCAAGTCCAGCGATGACTCCACTGTTGAAG
i caePb3.Scfld02_0     C 0 I 45
s caeJap4.Scaffold4951    93571 226 +   152553 ACAGttattggagaaaaaaaaacaaaaaa---------aaaaaaacttcgccaaataataaataa----atatacaaTTTGATATTCTTTTACAATTCTAATGCAAAAGAGAAGGGTTGATGGCTTCAGAGGCAGCAAGTGAAGTCTGGAGAGTGAGACGAGCACATTCTTGTCCGATTTGCAGAGATTCAACGACTGATTTATTGTGCACTAGACCGGCAATTACTCCACTGTTGAAA
i caeJap4.Scaffold4951 I 30 C 0

a score=10642.000000
s ce10.chrX             2196738 118 + 17718866 -------------------------------------------CTATCACCGGCAC---CGGAAA-----CCGATACGACTTTGTTCATTTGAAGTGGAGGTGGGAGCGA-------------------------------------TTGGAATTCAAGTTGGCC------------------AAGTTTATTTCTGAAAATA-----AATTTTAT-----ACATATTAGTTTAG
s cb4.chrX             13669741 121 - 21540570 -------------------------------------------ctgTCTCCAGCTC---CGGACA-----CTGAAACAATTTTATCCATTTGAAGAGGTGGAGGAAGTGA-------------------------------------TTGGAACTCGAGCTGACC------------------CAAATCATTCCTGAAATCTCACTAAATTTTAA-----ACGCCTT--CTTTA
i cb4.chrX             I 312 I 6
s caeRem4.Crem_Contig0  4425474 108 +  4500979 -------------------------------------------ctATCCCCAGCAC---CCGAAA-----CTGAAATAATCTTATCCATGTGAAGCGGAGGAGGAAGTGA-------------------------------------TTGATACTCCAGCTGACC------------------TAACTTGTTTCTGGAAAAC-----AGTTTTAG---------------TTTG
i caeRem4.Crem_Contig0 I 48 I 30
s caeSp111.Scaffold629 33126613 102 + 33334924 -------------------------------------------CTGTCACCGGCAC---ctgaaa-----ctgaaacaatTTTGTTCATTTGAAGTGGTGGAGGCAACGA-------------------------------------TTGGAATTCCAATTGACC------------------GAGCTTGTTTCTAGAAA-------TGTTTTCT-------------------
i caeSp111.Scaffold629 I 46 C 0
s caePb3.Scfld02_0      2935780 175 -  4147112 -------------------------------------------ATGCAATGAGAATGGACTAAAACTTCTCTGAAACAAG-------ATCAGGAGCGGAGTAATTAAAAATCAAGAGTACATAAAATGTGACTTTTGTCTagtcatttcgaattttcaaataaattccCTGCGCAAACATTTGAagcctctttttttgaa-------agttgtattgtaaatataat--ttttg
i caePb3.Scfld02_0     I 45 C 0
s caeJap4.Scaffold4951    93797 142 +   152553 ctaaaaatattgataaataatgtggaaattttcagattcGTACCTGTCTCCAGCAC---CTGACA-----CAGAAACTACTTTTCTCATTTGCAATGGTGGCGGCAGTGA-------------------------------------TTGGAATTCCAGTTGGCC------------------ATTGTTATTCCTGAAATCA-----AAC------------------------
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2196856 4 + 17718866 AACA
e caePb3.Scfld02_0      2935955 0 -  4147112 C
e caeJap4.Scaffold4951    93939 0 +   152553 C
e cb4.chrX             13669862 6 - 21540570 I
e caeSp111.Scaffold629 33126715 0 + 33334924 C
e caeRem4.Crem_Contig0  4425582 30 +  4500979 I

a score=-11110.000000
s ce10.chrX             2196860 71 + 17718866 CTTAGAATGGAATGGTCAAATATCTTTTTTCAAAAAACCTTTTCAGGCAATTTTTGGAAA---ATTGTTCATTT-
s caeSp111.Scaffold629 33126715 26 + 33334924 ---------------------ACTTTCTT------------------------ATGGAGA---AGCGTATATTG-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2935955 54 -  4147112 -ttgaaa--------tcagaaattttctccGAAA----CTATACAA-------ATGAAGAAacagcttgttttt-
i caePb3.Scfld02_0     C 0 I 179
s caeJap4.Scaffold4951    93939 12 +   152553 ---------------------------------------------------------------AGTTGCTAATCC
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13669862  6 - 21540570 I
e caeRem4.Crem_Contig0  4425582 30 +  4500979 I

a score=0.000000
s ce10.chrX             2196931 8 + 17718866 Agcgaggc
e caePb3.Scfld02_0      2936009 179 -  4147112 I
e caeJap4.Scaffold4951    93951 0 +   152553 C
e cb4.chrX             13669862 6 - 21540570 I
e caeSp111.Scaffold629 33126741 0 + 33334924 C
e caeRem4.Crem_Contig0  4425582 30 +  4500979 I

a score=-1756.000000
s ce10.chrX             2196939 77 + 17718866 gggcacggcaggtgtttcgcgtctgcaaggaagccctaTTCAGCACAACAGTAATAGTTGCGTTTTAAAATTCAAGC
s caeJap4.Scaffold4951    93951 19 +   152553 --------------------------------GCTTTATT---------AGTTAGAGGCG-----------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2936009 179 -  4147112 I
e cb4.chrX             13669862  6 - 21540570 I
e caeSp111.Scaffold629 33126741  0 + 33334924 C
e caeRem4.Crem_Contig0  4425582 30 +  4500979 I

a score=0.000000
s ce10.chrX             2197016 29 + 17718866 TTGGCAATTTGTAGAAAATGCAAAATACC
e caePb3.Scfld02_0      2936009 179 -  4147112 I
e caeJap4.Scaffold4951    93970  0 +   152553 C
e cb4.chrX             13669862  6 - 21540570 I
e caeSp111.Scaffold629 33126741  0 + 33334924 C
e caeRem4.Crem_Contig0  4425582 30 +  4500979 I

a score=298017.000000
s ce10.chrX             2197045 438 + 17718866 CTACCTATATACCACTGCCGATCCCTTATTCGCCAATGTCACAATAAAAATGGAAGTATTGAGTAGCAGCTTAGTTTTCTCCTTTTCTATAAGTTCCAGCACACCATCGGCTGTATCAATGACCGACGGATCTACGGAGACGTGACAGAGTTTAGCCCATTTCAGAAACTCATTGGCATTTGGCGATGCGGCAGTTACAGCTCCAACCAAGCCTGTGTCGAACACCTTTTTCACTTTGTCAATGTCCGTGGGCTCGAGCCAAACTG-------AAGCCTTGTATATTTTTG--TCTGTTTTT----GTTAATTCTATGTAAGTCACCATACCTTGTTTATCATGTTTCTTTGCAATTTCTAAAACTCTGGCCATAACTGGAACTGATAGATTTGAATCAAGAAGAATGAAATCTGATGATTCCAATGCATCTTCATTGCTTTCAACCTGAA
s cb4.chrX             13669868 432 - 21540570 CTACCTGTACACTACTGCAGATCCCTTGTGTGCCAGTGTCACCACAAACACAGACGTGTTCAAAAGAAGCTTTGTCTTTTCCCTCTCTatcaattccaaaacattATCGGCGGTGTCAATTACGAATGGATCCAATCTGACGTTGCACAGTTTTGCCCATTTCAGAAACTCATTCCCGTTTGGCGATGCGGCGGTAACTGCACCAACAAGGCCAGTGTCAAAGACTTTTTTCACCTTGTCGAGATCAGTGGGCTCGAACCatactg-------aaaatat-taaattttga--tttcgttCGCTAAATAAAAT---TATGG------ATACCTCTCTTGTTATGTTTCTTGGCAATTTCTAAGGTTTTCATCATTACCGGAACGGGAAGATTGGCATCAAGAAGGATGAAGTCAGCACATTCTAGGACATCTTCGTTGCTTTCAACCTGAA
i cb4.chrX             I 6 I 1038
s caeRem4.Crem_Contig0  4425612 423 +  4500979 -----TGTATGCCACTGCTGATCCTTTATTTGACAGTGTCACAACAAACACCGAGGTGTTCAGGAgcaatttcgttttttctttttcgataaGTTCAAGTACACTATCTGCGGAATCAATGACGGAAGGATCAACAGATACATGGCAGAGCTTTGCCCATTTCAGGAACTCATTGGCGTTTGGTGACGCGGCTGTTACTGCTCCAACCATGCCGGTGTCAAAcactttcttcgttttctcgaTATCAGTTGGCTCAAACCAAACtg-------tgaaatt-tattttatca--cTTCTTCCT----ATTAAAC---AATAA------ATACCTTGTTTCTCATGTTTCTTCGCAATTTCCAAAGTTCTGGTCATAACTGGAACTGGTAAGTTAGCATCGAGAAGAATGAAGTCAGCTGATTCTAGAGCGTCTTCATTGCTTTCAATCTACA
i caeRem4.Crem_Contig0 I 30 I 4
s caeSp111.Scaffold629 33126741 428 + 33334924 TTACCTGTACACAACAGCAGAACCTTTATTTGACAATGTTACCACAAAAATTGATGTGTTCAACAGaatcttcgatttttctttctcaatcaACTCTAGAACACCGTCTGCGGTATCGATAATTGATGGATCAACGGATACGTGACACAGTTTTGCCCATTTCAAGAACTCATTTGCATTCGGAGAAGTTGCTGTCACAGCTCCAACCAATCCAGTGTCAAACACTTTCTTCACTTTATCTATATCTGTTGGCTCAAGCCAAACTG-------AAAAGTT-TATATATCTA-----TATTTa----atgaaacatgaaaat------aaaCCTTGTTTTTCATGCTTCTTGGcaatttccaaaacttttGCCATGACTGGAATTGGTAGGTTAGAATctaacaaaatgaaatcagaagtCTCCAGAACATCTTCGTTGTTTTCAATCTGTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2936188 432 -  4147112 TTACCTGTAAACCACAGCGGAACCTTTGTTAGACAGTGTCACCACAAAGATAGAAGTGTTCAGaagaattttagatttttccttttctatcAATTCTAAGACACTATCAGCAGAGTCGATGACAAATGGATCCACAACAACATTGCACATTTTGGCCCATCTCAGAAATTCATTTGCATTTGGTGAAGCGGCGGTGACTGCTCCAACCATCCCGGTGtcgaatacttttttgacTTTGTCAATATCTGTTGGTTCCAGCCAAACTA-------TCAAACG-AATAAATTTGCTATTTGTTTA----ATGATGTCT-AATGT------CTACCTTGTTTCTCATGTTTCTTCGCAATTTCCAAAGCTTTTGCCATAACAGGGACTGACAGATTGGAATCCAAAAGAATGTAATCAGCACTTTGTATAGCATCTTCGTTGCTTTCAATCTGGA
i caePb3.Scfld02_0     I 179 C 0
s caeJap4.Scaffold4951    93970 432 +   152553 --ACCTGTAAGCAACTGCTGATCCCTTGTTGGAAAGTGTGacaacaaaaattgaagtaTTCAGCAGaagttttgttttctccttcTCGATTAACTCAAGAACACTGTCAGCTGAATCGACGACTGATGGATGAACAGAAACGTTGCAAAGCTTTGCCCATTTCAAAAACTCGTTTGCGTTTGGTGACGTGGCAGTAACAGCTCCAATAAATCCAGTgtcgaaaacttttttcactttGTCGATGTCAGTGGGTTCGAGCCAGACTGTAATAAAAAATCCT-GACATTTTTA---TCCACATA----CTTTAAT---AACCG------CAACCTTGTTTATTATGTTCTTTTGCAATTTCTAAAGCTTTTGCCATTACTGGAACAGGTAGATTGGAATccaaaagtataaaatcagaAGCTTGAAGTGCATCCTCATTCTTTTCAATCtgga
i caeJap4.Scaffold4951 C 0 C 0

a score=-981.000000
s ce10.chrX             2197483  5 + 17718866 AAAAC-------------
s caeRem4.Crem_Contig0  4426039  5 +  4500979 AGAAC-------------
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33127169  5 + 33334924 AGAAC-------------
i caeSp111.Scaffold629 C 0 I 35
s caePb3.Scfld02_0      2936620  5 -  4147112 ATAAA-------------
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951    94402 18 +   152553 agaaaaagacgcaTACAT
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13670300 1038 - 21540570 I

a score=546.000000
s ce10.chrX             2197488 1 + 17718866 A
s caeRem4.Crem_Contig0  4426044 1 +  4500979 A
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2936627 1 -  4147112 A
i caePb3.Scfld02_0     I 2 I 25
s caeJap4.Scaffold4951    94420 1 +   152553 A
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13670300 1038 - 21540570 I
e caeSp111.Scaffold629 33127174 35 + 33334924 I

a score=-1728.000000
s ce10.chrX             2197489 25 + 17718866 -ACTATTTTTTGCCTCGTATCCT-ATT
s caeRem4.Crem_Contig0  4426045 20 +  4500979 -GTAATT------CTCGTATTCTCATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951    94421 21 +   152553 AGTCTTTTCTACATCTGTGTT------
i caeJap4.Scaffold4951 C 0 I 6
e caePb3.Scfld02_0      2936628 25 -  4147112 I
e cb4.chrX             13670300 1038 - 21540570 I
e caeSp111.Scaffold629 33127174 35 + 33334924 I

a score=484.000000
s ce10.chrX             2197514 3 + 17718866 ATA
s caeRem4.Crem_Contig0  4426065 1 +  4500979 --A
i caeRem4.Crem_Contig0 C 0 I 8
s caePb3.Scfld02_0      2936653 3 -  4147112 aaa
i caePb3.Scfld02_0     I 25 C 0
s caeJap4.Scaffold4951    94448 3 +   152553 AAA
i caeJap4.Scaffold4951 I 6 C 0
e cb4.chrX             13670300 1038 - 21540570 I
e caeSp111.Scaffold629 33127174 35 + 33334924 I

a score=2216.000000
s ce10.chrX             2197517 5 + 17718866 CCCAC
s cb4.chrX             13671338 5 - 21540570 CTTAC
i cb4.chrX             I 1038 C 0
s caeRem4.Crem_Contig0  4426074 5 +  4500979 CTTAC
i caeRem4.Crem_Contig0 I 8 C 0
s caePb3.Scfld02_0      2936656 5 -  4147112 ctcac
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    94451 5 +   152553 CGAAC
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33127174 35 + 33334924 I

a score=131931.000000
s ce10.chrX             2197522 265 + 17718866 CAATGACGGAGTAATGACACTCAGAAGTGGCTCACAAGTAACAATTCCATATTTCACGTTTCCTTTCACGTTGACTGCTAAATAAGTGCAAGTTGGTTTGTTGCTTATAATCTTTACTCGATTAATATCCTAAACG------------ACACGAAAATTTCCATGAGAAACAACAAAAAAATTTC----------------CTACAATTTTATGACTGTTCTGTCTGAAGAAATGTCCGTTGTTGTCATCGCCAATAGCAGAAATGAAAACTGAATCACATCCAAGCCTGAAA
s cb4.chrX             13671343 264 - 21540570 CAATGCTGGAGTCAATGAGTTCAACAGAGGTTCACAGGTCACGATTCCATATCTAACATTCCCACGAACATTAACAGCTAGATAAGTACACGTTGGCTTGTGTGGTATCACTTTCACTCTATTGACATCCTGA-----------------------------AACATAGCtaaatgatttttgatctCTGTCTCTAATTATTCACAAATTGATCGCTGTGTTGGCGGAAGAATTTTCCGTTCTGATCATCTCCAATTGCTGAAATGAACACTGAATGGCAACTCAATCTGAAA
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4426079 274 +  4500979 CAATGACGGGGTGAGGCAACTCAGAAGAGGCTCACAAGTCACAATACCATATTTCACATTCCCTCGAACATTCACGGCTAGATATGTGCATGTTGGTTTGTGAGGTACCACTTTCACTCTATTGGTGTCCTGAAAATATTATCATAGAATGTAT-------CAACAGAGCGAAGACGAATGTGAT------------GCACACACAAATCTGTCACTATGTTGTCGGAAGAATTGTCCATTCTGATCGTCGCCAATTGCAGAAATAAAGATAGAATCGCAACCCAATCTGTAA
i caeRem4.Crem_Contig0 C 0 I 438
s caeSp111.Scaffold629 33127209 260 + 33334924 CATGATAGGAGTCACAGAATTCAACA---ACTCAGCGTTCACAATACCATATCTGACATTTCCACGAACATTCATAGCCAAATATGTGCATGTTGGCTTGTGTCCTATTATTTTCACTCTGCTGATAtcctgaaga---------aaaatatgt----ttcttGAACACCGGAAAGAAATATTCT-----------------TACTATTTTATCACTGTTATGCCGGAAGAATTGTCCATTTTGATCGTCGCCTACTGCAGAAATGAACACGGAATTACAACCAAGTCTGGAA
i caeSp111.Scaffold629 I 35 I 480
s caePb3.Scfld02_0      2936661 268 -  4147112 caacGCAGGCGTGATAGTGCTCAACAGTGGTTCAGCAGTCACAATTCCAAATCTGACATTACCCTTAACGTTAACTGCCAAGTAAGTACACGTTGGTTTGTGACCAATAATTTTTACTCTACTGatatcctgaaaa--------tgaaatatgtcAGATTCCGtgaaatttgatagaaaaattct-----------------TACAATTTTATCACTATGTTGGCGGAAAAATTGTCCATTCTGATCGTCTCCAATTgcagaaatgaaaacagaatcACAGCccaatctgaag
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    94456 263 +   152553 CAAACTTGGCGTAATTGTTTTGAGAAGCGGATCACAAGTGACAACACCGAATTTTACATTTCCACAAACATTGACAGCCAAATAAGTACAAGTGGGTTTGCCAGTCACTATTTTCACTCTGCTAATATCCTGAATT----------------------------GTGAATAATCAGTAATTTGCC--ACGTTGTTCAAACTTTACAATTCTGTGACTTTGCTGCCGAAAGAAAGTGCCATTCTGATCGTCTCCAATTGCCGAGATGAAGACAGATTCACAGCCGAGtcttaaa
i caeJap4.Scaffold4951 C 0 C 0

a score=91.000000
s ce10.chrX             2197787 1 + 17718866 T
s caeJap4.Scaffold4951    94719 1 +   152553 t
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2936929 0 -  4147112 C
e cb4.chrX             13671607 2 - 21540570 I
e caeSp111.Scaffold629 33127469 480 + 33334924 I
e caeRem4.Crem_Contig0  4426353 438 +  4500979 I

a score=2504.000000
s ce10.chrX             2197788 8 + 17718866 AAAAAATA
s cb4.chrX             13671609 8 - 21540570 ATAAAGTA
i cb4.chrX             I 2 C 0
s caePb3.Scfld02_0      2936929 8 -  4147112 aaaaaata
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    94720 8 +   152553 ttaaaata
i caeJap4.Scaffold4951 C 0 I 357
e caeSp111.Scaffold629 33127469 480 + 33334924 I
e caeRem4.Crem_Contig0  4426353 438 +  4500979 I

a score=273.000000
s ce10.chrX             2197796 1 + 17718866 T
s cb4.chrX             13671617 1 - 21540570 T
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2936937 1 -  4147112 t
i caePb3.Scfld02_0     C 0 I 567
e caeJap4.Scaffold4951    94728 357 +   152553 I
e caeSp111.Scaffold629 33127469 480 + 33334924 I
e caeRem4.Crem_Contig0  4426353 438 +  4500979 I

a score=77.000000
s ce10.chrX             2197797 24 + 17718866 ATTTTAAGATAAAGCTATTTTCAA
s cb4.chrX             13671618 24 - 21540570 TTTGTCTTTTCATTCTGTTTTCGA
i cb4.chrX             C 0 I 454
e caePb3.Scfld02_0      2936938 567 -  4147112 I
e caeJap4.Scaffold4951    94728 357 +   152553 I
e caeSp111.Scaffold629 33127469 480 + 33334924 I
e caeRem4.Crem_Contig0  4426353 438 +  4500979 I

a score=0.000000
s ce10.chrX             2197821 1032 + 17718866  
e caePb3.Scfld02_0      2936938  567 -  4147112 I
e caeJap4.Scaffold4951    94728  357 +   152553 I
e cb4.chrX             13671642  454 - 21540570 I
e caeSp111.Scaffold629 33127469  480 + 33334924 I
e caeRem4.Crem_Contig0  4426353  438 +  4500979 I

a score=728.000000
s ce10.chrX             2198853 26 + 17718866 CTTTTAGCGCGACGCACAAGCGATGA
s cb4.chrX             13672096 26 - 21540570 CTTTTAgcgcgcttcaaaatgaagca
i cb4.chrX             I 454 C 0
e caePb3.Scfld02_0      2936938 567 -  4147112 I
e caeJap4.Scaffold4951    94728 357 +   152553 I
e caeSp111.Scaffold629 33127469 480 + 33334924 I
e caeRem4.Crem_Contig0  4426353 438 +  4500979 I

a score=300.000000
s ce10.chrX             2198879 1 + 17718866 C
s cb4.chrX             13672122 1 - 21540570 C
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4426791 1 +  4500979 c
i caeRem4.Crem_Contig0 I 438 C 0
e caePb3.Scfld02_0      2936938 567 -  4147112 I
e caeJap4.Scaffold4951    94728 357 +   152553 I
e caeSp111.Scaffold629 33127469 480 + 33334924 I

a score=828.000000
s ce10.chrX             2198880 5 + 17718866 ATTCT
s cb4.chrX             13672123 5 - 21540570 ATTTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4426792 4 +  4500979 attc-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33127949 5 + 33334924 ATTCT
i caeSp111.Scaffold629 I 480 C 0
e caePb3.Scfld02_0      2936938 567 -  4147112 I
e caeJap4.Scaffold4951    94728 357 +   152553 I

a score=1925.000000
s ce10.chrX             2198885 14 + 17718866 AATTTA--CGAGTATT
s cb4.chrX             13672128 14 - 21540570 AATTTA--CAATTGTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4426796 13 +  4500979 -attca--aaattgta
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33127954 15 + 33334924 AATTTATGTGATCAT-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2937505 14 -  4147112 AATTTA--TTACTATT
i caePb3.Scfld02_0     I 567 C 0
e caeJap4.Scaffold4951    94728 357 +   152553 I

a score=190243.000000
s ce10.chrX             2198899 736 + 17718866  
s cb4.chrX             13672142 774 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4426809 676 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33127969 664 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2937519 656 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    95085 842 +   152553  
i caeJap4.Scaffold4951 I 357 I 49

a score=-5970.000000
s ce10.chrX             2199635 50 + 17718866 TGCAAAGCTCCGAACTTAATAGTTTCACTATGTATCATCAAAAACCA---TTG
s cb4.chrX             13672916 39 - 21540570 ----------tgaacttttcgccGTCGT----TGTTCTCTAGTTTGAATCATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4427485 31 +  4500979 ----------tgaactttttgatgt---------ttaattcatttga---att
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33128633 31 + 33334924 ----------TGAACGCATCGGTAC---------TCAACTTAACTAC---ACC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2938175 31 -  4147112 ----------gaaactttttgatgt---------ttaGGAAGTCTAA---AAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    95927 49 +   152553 I

a score=164081.000000
s ce10.chrX             2199685 199 + 17718866 TTTTCAGGCACTTTTGTGTATCGCATCAATTGTTGCAATTCGGAAAAGACAAATTGGCGTTGTCGTTTTTTGTCATTGGATAAAGTGCTGTACACTTATTGTGGATGCTGTCATGGTTTTCGTTTTTGCAAGCATCATGTCCACAGCTCACACCTCGCTATATTCCCACATTCAAGTACTTCACAATAGCAGTGTAAGT
s cb4.chrX             13672955 199 - 21540570 TCTCCAGGCATTCCTTTGTGTTGCGTCGATTGTGGCCATTCGACAGCGACAAATTGCCATTGTCGTGTTCTGTCACTGGTTGACATGTTGCACACTTGTCGTCGACGCTAtcatgatttttgttttcgcCAATCTCATGTCCACCGCGCACACCTCGTTGCATTCTCACATTCAAGTACTTCATAAAAGCAGCGTAAGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4427516 199 +  4500979 tctaCAGGCCTTTCTTTGTGTCTCATCAATTGTCGCCATTCGACAACGACAAATTGCCATTGTTGTTTTCTGTCATTGGTTGACATGTTGCACACTGGTAATCGATGCCGTCATGGTTTTCGTGTTCGCAAATCTCATGTCCACCGCGCACACTTCGCTCCATTCCCACATTCAAGTACTCCATCAGAGCAGCGtaagt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33128664 199 + 33334924 GTTGTAGGCCGTTCTCTGTATCTCTTCAATCGTTGCCATTCGACGCAGACAAATCGCTATTGTCGTTTTCTGTCATTGGTTAACCTGTTGCACACTTGTAATCGATGCCATCatgattttcgtttttgcaAGCCTCATGGCGTCAGCTCACACTTCTCTGCATTCCCACATTCAAGTACTTCACAAAAGCAGCGTAGGT
i caeSp111.Scaffold629 C 0 I 3
s caePb3.Scfld02_0      2938206 199 -  4147112 GTTACAGGCCCTTCTTTGTGTTACATCTATTGTGGCCATCCGACAAAGACAAATTACCATTGTTGTCATCTGTCACTGGGTAACGTGTTGCACGTTGGTAGTCGATGCTATAATGATTTTCGTATTCGCTAACCTCATGTCATCGGCCCATAACTCACTACATTCTCATGTTAGAACACTTCACGAAACTAGCGTAAGT
i caePb3.Scfld02_0     C 0 I 33
s caeJap4.Scaffold4951    95976 199 +   152553 TTTCCAGGCGCTTCTTTGTATTGTAATCATAGTGGCAATTCGTCAGAGACAAATTgcggttgttgttttttgtcacTGGATTTCATGTTGCACCCTGATTGTTGATGCCGTtatgatttttgttttcgcaaaCATTATGTCTTCCGCCCACACTTCTCTGTATTCTCATATCAGAGTCTTACATGAAGATAGCGTAAGT
i caeJap4.Scaffold4951 I 49 C 0

a score=-600.000000
s ce10.chrX             2199884 1 + 17718866 A
s cb4.chrX             13673154 1 - 21540570 T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4427715 1 +  4500979 t
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33128866 1 + 33334924 G
i caeSp111.Scaffold629 I 3 C 0
s caeJap4.Scaffold4951    96175 1 +   152553 A
i caeJap4.Scaffold4951 C 0 I 59
e caePb3.Scfld02_0      2938405 33 -  4147112 I

a score=868.000000
s ce10.chrX             2199885 7 + 17718866 TTCAAGA
s cb4.chrX             13673155 7 - 21540570 GAGAAGA
i cb4.chrX             C 0 I 41
s caeRem4.Crem_Contig0  4427716 7 +  4500979 tgcaaaa
i caeRem4.Crem_Contig0 C 0 I 62
s caeSp111.Scaffold629 33128867 7 + 33334924 TGCAATA
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2938405 33 -  4147112 I
e caeJap4.Scaffold4951    96176 59 +   152553 I

a score=-1579.000000
s ce10.chrX             2199892 43 + 17718866 -TTTTGAA--------ATCCGGGAGAAAAAC-CAAGTATACAGTTAGGTTGAT---
s cb4.chrX             13673203 48 - 21540570 -ttttaaaaatgtggtTTCAGATAATACAATTCAAAAGTAACGGAagac-------
i cb4.chrX             I 41 C 0
s caeSp111.Scaffold629 33128874 45 + 33334924 CTTTTAGA--------TTCTGAGAGAACA---TAAGAAAACCAAACGATTGttgat
i caeSp111.Scaffold629 C 0 I 1
e caePb3.Scfld02_0      2938405 33 -  4147112 I
e caeJap4.Scaffold4951    96176 59 +   152553 I
e caeRem4.Crem_Contig0  4427723 62 +  4500979 I

a score=-2565.000000
s ce10.chrX             2199935 469 + 17718866  
s cb4.chrX             13673251 496 - 21540570  
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2938405  33 -  4147112 I
e caeJap4.Scaffold4951    96176  59 +   152553 I
e caeSp111.Scaffold629 33128919   1 + 33334924 I
e caeRem4.Crem_Contig0  4427723  62 +  4500979 I

a score=-660.000000
s ce10.chrX             2200404 19 + 17718866 TTTTAACACGTGTTATTAA
s cb4.chrX             13673747 12 - 21540570 ------CCGAAAacgttt-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4427785 18 +  4500979 TTTTTACACAAgatgttt-
i caeRem4.Crem_Contig0 I 62 C 0
e caePb3.Scfld02_0      2938405 33 -  4147112 I
e caeJap4.Scaffold4951    96176 59 +   152553 I
e caeSp111.Scaffold629 33128919  1 + 33334924 I

a score=546.000000
s ce10.chrX             2200423 1 + 17718866 T
s caeRem4.Crem_Contig0  4427803 1 +  4500979 t
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33128920 1 + 33334924 t
i caeSp111.Scaffold629 I 1 C 0
s caeJap4.Scaffold4951    96235 1 +   152553 T
i caeJap4.Scaffold4951 I 59 C 0
e caePb3.Scfld02_0      2938405 33 -  4147112 I
e cb4.chrX             13673759 0 - 21540570 C

a score=65874.000000
s ce10.chrX             2200424 91 + 17718866 TTTCAGAAAGAACTATGCTCTGTCTGGGATAACGTCTATCAGACTTTGATTTGCTGCCCACCCGAAGAAGTGTTACAAACATGTGCAGGTA
s cb4.chrX             13673759 88 - 21540570 ---cagaaaaaactctGTCCAGTTTGGGATCATGCCTATCACACGCTTTCTTGCTGCCCAACCAAGGAAGTTCTCAAAACTTGTTCTGgta
i cb4.chrX             C 0 I 42
s caeRem4.Crem_Contig0  4427804 91 +  4500979 ttccagaaaactcttTGTCCAGTCTGGGACAACGCCTATCAAGCTTTGACCTGCTGCCCACCGACAGAAGTTCTGAAGACCTGCTCAGGTA
i caeRem4.Crem_Contig0 C 0 I 36
s caeSp111.Scaffold629 33128921 91 + 33334924 tttcagaaagaactTTGTTCAGTTTGGGACAAAGTCTTTCAAGCTCTTGCTTGCTGCCCTCCAAAAGACATTTTGAGAACTTGTGCAGGTA
i caeSp111.Scaffold629 C 0 I 31
s caePb3.Scfld02_0      2938438 91 -  4147112 TTTTAGAAGGAACTCTGCCCTGTTTGGGACAATGCCTATCATACACTTACTTGTTGTCCACCaatagaagttttgaaatcttgcTCAGGTA
i caePb3.Scfld02_0     I 33 I 38
s caeJap4.Scaffold4951    96236 90 +   152553 TTCCAGAAAGAACTATGCCCAGTATGGGACAATGCATATCATGTGCTCTCTTGTTGCCCACCGATAGAAGTTTTGAAAACATGTGAGGGC-
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2200515 35 + 17718866 TCTAGTTTCTACAGTTGTTCCCCTCATAAAATTCT
e caePb3.Scfld02_0      2938529 38 -  4147112 I
e caeJap4.Scaffold4951    96326  0 +   152553 C
e cb4.chrX             13673847 42 - 21540570 I
e caeSp111.Scaffold629 33129012 31 + 33334924 I
e caeRem4.Crem_Contig0  4427895 36 +  4500979 I

a score=152889.000000
s ce10.chrX             2200550 292 + 17718866 GTATTTCAGATTTTCTAAACGTTACAAAATCGTTTTGCCCAACTGGACATTCCAATGACTGCTATATTCATCTCAAGAGGTAAC-------------ATATCTTTCAGGA--AAAACTGAAAT----TATATGAACAAAAAAATCTTGCAGATGGCTCCATTCCAATACAGAAATAGTCGGATGTCTTGCTTTTTGTGTGATCACGCCGCTGAAGTTGTTCATGATCGCAGCTCTTCGAAAAGATATCGAGAAAGTTGAAACAGAAATGGCGGAACTTGAATACTACTCTCAGATGATTAATGAATAGTAA
s cb4.chrX             13673889 285 - 21540570 ---TTTTAGATTTCCTCAACGCTACCAAAATACTCTGTCACACCGACCGCTCAAACGATTGCTATGTTCacatcaaaaagtgagaaaa---------atctATCAAAACATTGAATCCTAAAT-TGATCTA-------------TTTTTAGATGGCTCCATTCCAACACAGAAATTATAGGATGTCTAGCATTCTGTCTCATGGCACCTGTCAAGATTTTCATGCTTGTTGCACTTCGCAAAGATATTGAGAAGGTTGAGACTGAAATGGCAGAGCTGGAGTATTACTCGCAGATGATTAATGATTAGtga
i cb4.chrX             I 42 C 0
s caeRem4.Crem_Contig0  4427931 278 +  4500979 --tttctagattttctcaACATCACCAAGTTATTCTGTCCGATCGACAATTCAAACGATTGTCATGTTCATATCAAGAAGTAAG----------------CATTCAAGAATGAAACCcgtaat----ttta-----------gttttttaggTGGCTCCATTCTAATACCGAAATCGTTGGTTGTCTGGCATTCTGTATCATGGCCCCCGTGAAACTTTTCATGACTGCTGCTCTTCGTAAGGATATTGAAAAAGTCGAGACAGAGATGGCCGAATTGGAATACTACTCGCAAATGATCAATGACTAGTAA
i caeRem4.Crem_Contig0 I 36 C 0
s caeSp111.Scaffold629 33129043 281 + 33334924 GCATTTCAGGTCGTATCAATATTCCCACCGCATTCTGCTCAGTTGATAACTCGACAAACTGCCATATCCAACTCAAAAAGTACGAACAT------GGATATTTTC---------TGTCTCATT-----CTAT----------GTTCTTCAGATGGCTTCATTCAAATACGGAAGTGGTCGCTTGTCTTGCATTCTGCGTTATGACCCCGGTGAAACTATTCATGACCGCAGCTCTTCGcaaagatattgaaaaagttgaaactgaaatggCCGAACTTGAATATTACTCCCAAATGATCAATGAATAGtac
i caeSp111.Scaffold629 I 31 C 0
s caePb3.Scfld02_0      2938567 291 -  4147112 --GTTTCAGACTTTCTTAACGCCACAAAACTATTCTGTAGAAACAATCATTCAAATGACTGCCACATTCACATTAAAAAGTGAGTTCAT------ATAGATAGCCAAATAAGAATGACGCAGTAGCAACTA------------ATGTTTAGATGGCTCCATTCAAACACAGAACTCGTTGGATGTTTGGCATTTTGTCTTATGGCACCACTGAAACTATTCATGATGGTTGCACTCCGAAAAGACATTGAGAAAGTTGAAGTGGAAATCGCTGAGTTGGAGTATTACTCCCAAATGCTCAATGactagtga
i caePb3.Scfld02_0     I 38 I 35
s caeJap4.Scaffold4951    96326 289 +   152553 -----------TTTTTGAACGTTACAAGAATGTTTTGCCCGACAAATCACTCCAACGATTGCTACGTGCATCTTAAGAAGTAAGGAAACCTACTGAAGCGCTTTCACTGATAAAGCTTAACat----tgca-------aaatttgttctagATGGCTTCATTCAAACACCGAAATCGTTGGGTGCTTGGCGTTTTGCGTTATCACACCATTAAAGCTCTTCATGATTGTTGCTCTGCGCAAAGATATAGAGAAAGTTGAGATGGAAATGGCCGAACTTGAGTACTTCTCACTGATGATCAACGATTagtga
i caeJap4.Scaffold4951 C 0 I 10

a score=-8517.000000
s ce10.chrX             2200842 39 + 17718866 TAACTATGACTTGAGGAGCATTAATAATCAACAATTATA-----------
s cb4.chrX             13674174 38 - 21540570 gtcttcttcttcttgttgaGATTATCA-GAAAATCGACT-----------
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4428209 32 +  4500979 GCATTAATACTTTTGTCTAATTTATCA-------CTATT-----------
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold629 33129324 30 + 33334924 ---------gttttttaaaaataataattgcaattgaca-----------
i caeSp111.Scaffold629 C 0 I 6
s caeJap4.Scaffold4951    96625 43 +   152553 -------tctctctgaTGATATGATGATTAAAACCAAAACCATTCCTCGG
i caeJap4.Scaffold4951 I 10 C 0
e caePb3.Scfld02_0      2938858 35 -  4147112 I

a score=212454.000000
s ce10.chrX             2200881 233 + 17718866 TTTCAGTGACCGCCATGGAGATGGTTACATCGAGAGCTTCAAGAGCAATATCAACTTG---------GCTGACAGCACGTCAACCCAAACATCAGGAATCAGCCGCGTTAAAAGTTTCCCAGGATATTCACCTTTCTTGAAGCACTCTGTAATCGAGGAGGTGGAGAACGAATTTACGGTCCGTGGGGATGAAATTCGGGAAGAGCTACAACAAGCGATTGCTGCTCATAATGCACGACAAC
s cb4.chrX             13674214 233 - 21540570 TTCCAGTGACCGTCACGGAGATGGATACATTGAGAGCTTCAAGAGCAACGCCAACTTG---------GCTGACAGTACATCAACACAGTCGTCGCGAGTAAGCCGTGTGAGAAGCTTCCCAGGATACTCGCCATTTTTGAAACACTCGGTTATTGAAGAAGTGGAGAATGAATTCACAGTTCGAGGGGACGAAATGAGAGACGAACTTCAGAAGGCGATTGCTGAACACAATGCTAGACAGT
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4428243 233 +  4500979 TTCCAGCGATCGACACGGAGATGGATACATTGAGAGCTTCAAGAGCAATGCAAACTTG---------GCTGAAAGCACTTCAACGCAATCATCAAGAGTGAGCCGTGTTCGGAGCTTCCCTGGATATTCTCCATTCTTGAAACACTCTGTCATTGAGGAAGTCGAGAACGAGTTTACCGTTCGTGGAGATGAAATCAGAGAGGAACTACAACAAGCTATTGCTGCACATAATGCTAGACAAC
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold629 33129360 233 + 33334924 tttcagtgatcgTCACGGAGATGGATACATCGAAAGCTTCAAAAGTAACGCAAATCTG---------GCTGAAAGCACATCAACCCAATCTTCGAGAGTCAGTCGTGTTCGAAGCTTCCCAGGATATTCACCATATTTGAAGCACTCTATCATTGAAGAAGTTGAGAATGAGTTCACTGTTCGTGGTGATGAAATCAGAGAAGAGCTTCAGCAAGCAATTGCTGCTCATAATGCAAGACAGC
i caeSp111.Scaffold629 I 6 C 0
s caePb3.Scfld02_0      2938893 233 -  4147112 tttcagtgatAGACACGGCGACGGATACATTGAGAGCTTTAAGAGTAATGCTAATCTG---------GTCGAGAGCACATCAACCCAATCTTCGAGAGTTAGTCGTGTTCGAAGCTTCCCAGGCTATTCTCCATATTTGAAACACTCTGTCATTGAAGAAGTGGAGAATGAATTCACAGTTCGTGGAGATGAAATTCGAGAAGAACTTCACCAGGCAATTGCGGCTCATAATGCAAGACAAT
i caePb3.Scfld02_0     I 35 C 0
s caeJap4.Scaffold4951    96668 242 +   152553 TTACAGCGACCGCCATGGGGATGGGTACATTGAGAGCTTCAAAAGCAATGCCAACCTAACAATTAGCGCGGAAAGTAATTCAACGCAATCCTCCCGTGTGAGCCGAGCCAGAAGTTTTCCTGGATATTCACCATTCGTGAAGCACTCGGTTATTGAGGAAGTGGAGAACGAATTCACAGTACGCGGTGATGAGATTCGAGAAGAGCTTCACGCAGCAATCGCTGCCCATAATGCTCgccaac
i caeJap4.Scaffold4951 C 0 I 66

a score=5453.000000
s ce10.chrX             2201114 10 + 17718866 TTGAGGCGGC
s cb4.chrX             13674447 10 - 21540570 TAGAGCCTGC
i cb4.chrX             C 0 I 43
s caeRem4.Crem_Contig0  4428476 10 +  4500979 TTGAAGCCGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33129593 10 + 33334924 TTGAAGCGGC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2939126 10 -  4147112 TTGAAGCAGC
i caePb3.Scfld02_0     C 0 I 226
e caeJap4.Scaffold4951    96910 66 +   152553 I

a score=311.000000
s ce10.chrX             2201124 2 + 17718866 TG
s caeRem4.Crem_Contig0  4428486 2 +  4500979 TA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33129603 2 + 33334924 TG
i caeSp111.Scaffold629 C 0 I 176
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e caeJap4.Scaffold4951    96910 66 +   152553 I
e cb4.chrX             13674457 43 - 21540570 I

a score=493.000000
s ce10.chrX             2201126 83 + 17718866 CT-------GTTACTGAACAGTTTTAATTTTTGGGGGTTCAGTTCAGTTTCT-CCTTTTTTCATTCCGACAGTTCAGGGGTTTTTGTGAAA
s caeRem4.Crem_Contig0  4428488 76 +  4500979 CTCTTCAAGATTAATTAACGGtttgatt--------------ttcactttttgactaTTCTCATTCCTTTA-TTTAAAGGTTGTGGCGGAA
i caeRem4.Crem_Contig0 C 0 I 6
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e caeJap4.Scaffold4951    96910 66 +   152553 I
e cb4.chrX             13674457 43 - 21540570 I
e caeSp111.Scaffold629 33129605 176 + 33334924 I

a score=0.000000
s ce10.chrX             2201209 492 + 17718866 GTGTTTGCAAGGGTGTGATGTTGGTATAAGAGATGTTGTTGGTAAAATAATATTTTGATGAATCTTACTAGTTCGGCAATTTGTCACAACTTATACACCAACTTTTGCAACGTTTCTACGAACTATAGAAACATATCTACAACTTTGGCCAAGCACTTTCTACTAAGTTTACCTACTTTGATCAATTTTATCCAACCTTTTTCCCAAATTTAGCAACTTCTTCGCTTGGCATTGCTAAAGTTGCAGCAGTTGGTGGATGAGTTGCAGCAAATTGTCGAGAGTGTTTCACCTAGTGTATATTATTTTTCTCTAACTTTGTTTttaaatgagtttaaacggtttgggcaattttgatctaataatgcaaatttcgaataaaatgaactcaaataaacgaatttcgtaatgaaacttttcaaaattttttcaataattttttatggcggttTCACTTGTGTCTACTTTTCTGTGCCATGTCTGAACCGTTAGGTC
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e caeJap4.Scaffold4951    96910  66 +   152553 I
e cb4.chrX             13674457  43 - 21540570 I
e caeSp111.Scaffold629 33129605 176 + 33334924 I
e caeRem4.Crem_Contig0  4428564   6 +  4500979 I

a score=1039.000000
s ce10.chrX             2201701 54 + 17718866 CCCTTCAGACAACTTTCCACGGCTCAATCACTTTAAAATCCGCAAACCACTCAA
s caeRem4.Crem_Contig0  4428570 54 +  4500979 CCcctaaaacaatttttcatttcaaaacaaatgaaaaagaagaaaaactttcaa
i caeRem4.Crem_Contig0 I 6 C 0
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e caeJap4.Scaffold4951    96910 66 +   152553 I
e cb4.chrX             13674457 43 - 21540570 I
e caeSp111.Scaffold629 33129605 176 + 33334924 I

a score=-801.000000
s ce10.chrX             2201755 5 + 17718866 ATCTC
s caeRem4.Crem_Contig0  4428624 5 +  4500979 caact
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951    96976 5 +   152553 ATGTA
i caeJap4.Scaffold4951 I 66 C 0
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e cb4.chrX             13674457 43 - 21540570 I
e caeSp111.Scaffold629 33129605 176 + 33334924 I

a score=893.000000
s ce10.chrX             2201760 8 + 17718866 TAAGTTTC
s cb4.chrX             13674500 8 - 21540570 taaattat
i cb4.chrX             I 43 C 0
s caeRem4.Crem_Contig0  4428629 7 +  4500979 -aaaGTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951    96981 8 +   152553 tatgcttt
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2939136 226 -  4147112 I
e caeSp111.Scaffold629 33129605 176 + 33334924 I

a score=-22782.000000
s ce10.chrX             2201768 105 + 17718866 TTTCATCATAATTTTTTACGTGTTTTTCAAAAG----------TT-TTTCTTTTCT---A--------AATTGTCATGTTTTTTTTGGTTTTTTTTT---TTTTGGTATACTCCAT-----------------------------------TCCC-CAAATGTTTT
s cb4.chrX             13674508 126 - 21540570 ---tatta----ttcgattttcttttcttcgaa----------tt-ttccattCCTACAA----TCCCAACCATCACAATTTCTACGTGTtcccctt---ttctttttcagtcgATCCAAAACTCAT----CTTTCCAAATTGTTCTTTCCTCCG-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4428636 112 +  4500979 ---CATTACAATCTTGATTACTTCCCCATCACAAAAATGTACGTG-TTCTGTTTCTTTAAGTTCTTCGAGCCACCCTGA----AACATTTCCCtctttcgttgtttttctACCGAT-----------------------------------TCTC-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2939362  78 -  4147112 TTTCATCACAATTTTACGTGTTTCTCTCGAAAA----------CT-TTCCCGTTCATTAA--------Aactatct------------------------ttttttgtgaatcctT-----------------------------------TCCCC----------
i caePb3.Scfld02_0     I 226 C 0
s caeJap4.Scaffold4951    96989 136 +   152553 ttttgttttaatttttcattccAATCTTTCAAA----------TTACTGTTTTCCTCTCA-----------CAACCCGCATTACGTGTCTCGcccatttgttttgttttaactTCCAAAACTTTCATAACACTTTCCTTATG---------TCTCCccactgtttt
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33129605 176 + 33334924 I

a score=127609.000000
s ce10.chrX             2201873 216 + 17718866 TTTCTGATTTTTTTTGTTGTTGCTC------ATTTTCAATTGT--TCTTTGTTTCATT--CTCACCTTTACATCTTCACTCGTGATGGCTTCAAAGTCAACGATAGTTGCTCCGATAGAAACCTGAAAAAC-----AGTCGTGATCTGTTTGATACGTTTGAC-----AAATAAATGTCATTGAAACTAGTAGGCGTTG-GTTGTTTGC---TAAGACAGCTT------------GTGTTGTTTCAAACTTT
s cb4.chrX             13674634 225 - 21540570 TCCCTCAGTCATAATTTAGATCCTT------Cccccaatt-----tttgtaaatcttt--CTTACCTTCACATACTCGCTCGTGATGGCTTCGAAATCAACGATAGCTGCTCCGACAGATACCTGGAAAACACGAGATTCGTGA--TGGTTCGAG-------C-----AAATAAATGTCATTGAAACTGGTAGGCGTTGTGTTGTTTGTTAACAAGACAAAACGTCTGTTTGTAGgtattgtttcaaaattt
i cb4.chrX             C 0 I 28
s caeRem4.Crem_Contig0  4428748 226 +  4500979 CCTCTCAGTTTCTATGTAGTTCACTTTGACAcctctcgtt-----tttttgtttcatt--ctcaCCTTCAAATACTCGGTCGTGATCGCTTCAAAATCAACGATAGCTGCTCCGATAGATACCTGAAAAC------ATTCGTGATTTGTTTTGCGAAT---AC-----AaataaatttcattgaaactgGTAGGCGTTG-ACTGTTTGT---CTAGACAAAAC-TAAACTCGTTGGtattgtttcaaacttt
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold629 33129781 230 + 33334924 tttttcgcttttaatgttttcccca------tcttttgcttccgctttttgtttcatt--ctcACCTTCACATTTTCGCTCGTGATCGCTTCGAAATCAACGATGGCTGCTCCGATAGATACCTGAAAAC------AGTCGTGATTCGTTTAGCAAAT---ACAAATAAAATACATGTCATTGAAACTGGTAGGCGTTG-GTTATTTGT---CGAGACAGAAC-TCTACTCGACTgtattgtttcaattttc
i caeSp111.Scaffold629 I 176 I 3
s caePb3.Scfld02_0      2939440 203 -  4147112 TTTCTcattttgactat----------------------------tttttgttccatt--ctcACCTGAACATTCTCGCTCGTGATTGCTTCGAAATCAACGATAGCTGCTCCGATAGATACCTGAAAAC------ATTCGTGATTCTTTTCGCAAAT---AC-----AAATACATGTCATTGAAACTGGTAGGCGTTG-GTTATTTGT---TGAGACAGAAC-TAAACACGTCGGTATTGTTTCAAACTTT
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold4951    97125 200 +   152553 --tttctatttccttGAAAAGTAAA------CGTTATG-------TTTCAAATTCATTCGCTCACCTTCACATTTTCGCTCGTGATCGCCTCAAAATCGACGATAGTTGCTCCGATAGAAACCTGAAAAC------AATCGTGACGTCTTTT---------AC-----AAACACATGTTATTGAAACTAGTAGGAGTTG--TTGTTTGC---CGAGAGAAAAC-T----------GTATTGTTTTAACTTT-
i caeJap4.Scaffold4951 C 0 C 0

a score=-969.000000
s ce10.chrX             2202089 36 + 17718866 -------------------------TATGAGAA-CAATACCACATTTCGCAAGTGAATAAAA
s caeRem4.Crem_Contig0  4428977 36 +  4500979 -------------------------gaCAGAAA-GGATTTAAGGGAgtaaaagacaaaaaaa
i caeRem4.Crem_Contig0 I 3 I 15
s caeSp111.Scaffold629 33130014 37 + 33334924 -------------------------GACGGAAATGGATTAAGAGACAAAAcagagaatagaa
i caeSp111.Scaffold629 I 3 I 22
s caePb3.Scfld02_0      2939646 36 -  4147112 -------------------------GACGGAAG-GGATTTAGAGGAcggattgaaaacaaaa
i caePb3.Scfld02_0     I 3 I 22
s caeJap4.Scaffold4951    97325 61 +   152553 TAGCTTACTCAGcggattaaaaaaagaaacaaa-agatgtaacagtgcaaagacggaaacaa
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13674859 28 - 21540570 I

a score=73748.000000
s ce10.chrX             2202125 160 + 17718866 AAAAC--TTTATTGTAGGTTT--GACTCACCACTTTTGGTTTTCGAGTCGTT------GATGCAGTTGGTTGGCTCT------GTGAAATTGTAAGTGGACGTCTATCGCAGAG---CTTTGCGGCTAGTCTTCCAGCAATTGACGCATTATTCTCGAGAAGTGCAATGTCTGTAAAAT
s cb4.chrX             13674887 165 - 21540570 AAAAT--TGAGTTGT-TTTTT--GACTCACCACTTTTGGTTTtcttggagaa------gaagaagaagatgtatGGTTTTTAGAAACGGATGTAATTGTTCGTTTTTCATGCAT---TTTAGCGGCAAGTCTTCCAGCAATCGAAGCATTGTTTTCCAAAAGtgcaatatctgaaaaat
i cb4.chrX             I 28 I 232
s caeRem4.Crem_Contig0  4429028 161 +  4500979 AAAACCGTGTGTTTT-TCTTT--GACTCACCACTTTTGGTTTTCTTGGAGAA------GATGTAGAAGGTTGAGAGT------GAGTGACTGTAATTG---GTCTTCTATGCACTAGTTCGGTGGCTAATCTTCCCGCAATTGAAGCATTGTTTTCCAGAAGTGCAATATCTGaagata
i caeRem4.Crem_Contig0 I 15 I 5
s caeSp111.Scaffold629 33130073 159 + 33334924 gaact--tttctgtt-ttttt--gactCACCACTTTCGGATTTCTGTGAGAA------GATGAAGTTGGTTGTGTAT------GGGAAACAGTTATTGGGCGTCTATCACACAT---TTTTGCTGCTAATCTTCCAGCAATTGATGCATTGTTTTCAAGTAGAGCAATAtctaaaacaa
i caeSp111.Scaffold629 I 22 C 0
s caePb3.Scfld02_0      2939704 161 -  4147112 GAact--catgtttt-tgtttcacacTCACCACTCTTGGTTTTTTAGgagta------gaagaagatgaataagttt------gtgaaacagttattGGACGTCTATCGTTCAT---TTTTGCAGCTAGTCTTCCGGCAATTGATGCATTGTTTTCGAGAAGAGctatgtctgaaaaaa
i caePb3.Scfld02_0     I 22 C 0
s caeJap4.Scaffold4951    97386 143 +   152553 ---------------------aaaacTTACAACCGTGGGTTTTTTCGGTGAGCTCGTCGAAGAAGGCGGCTGAC---------CAGAATTTGTAATTGGACGTCTATCGGAGAG---TTTTGCAGCTAGCCTTCCAGCTATTGAGGCATTGTTTTCAAGTAAAGCAATGTCTGAAA---
i caeJap4.Scaffold4951 C 0 C 0

a score=-3685.000000
s ce10.chrX             2202285 18 + 17718866 GACAATTAACAGCGGAAA
s caeRem4.Crem_Contig0  4429194 18 +  4500979 aaagatgtattgtggaaa
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold629 33130232 13 + 33334924 aat-----atttcaatta
i caeSp111.Scaffold629 C 0 I 3
s caePb3.Scfld02_0      2939865 17 -  4147112 attgatg-aattcagttt
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951    97529 16 +   152553 --CAATTGAATATGAATA
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13675052 232 - 21540570 I

a score=70121.000000
s ce10.chrX             2202303 107 + 17718866 AATTGTTCAAAACGC-------ATACTTGTAGCCATTGAAGCTCCTTGTGTGAGCTCGTTCACTCTTGCAAGAATGAATGGGGTGACACTTTGTGAAGCGATGTTTTGTTCACT
s cb4.chrX             13675284 104 - 21540570 ---AATAATTCAAAC-------TCACTGGTAGCCATGGAAGCTCCTTTTGTCAGTTCATTGACTCTAGCTAAGATAAATGGTGTGACACTTTGGGATGCGATGTTTCGTtctct
i cb4.chrX             I 232 I 1254
s caeRem4.Crem_Contig0  4429212 103 +  4500979 ---aatgg-aaaaaa-------ttacTTGTTTTCATAGAAGCTCCTTGTGTGAGTTCGTTAACTCGGGATAGAATGAATGGGGTTACGCTTTGGGatgcaattttttgttctct
i caeRem4.Crem_Contig0 C 0 I 4
s caeSp111.Scaffold629 33130248 107 + 33334924 aaattcgaaaaaaaa-------atacttgTAGCCATTGAAGCCCCTTTCGTCAGTTGATTTACTCTCGCCAAAATGAATGGAGTGACGTTTTGAGAAGCGATATTCTGTTCACT
i caeSp111.Scaffold629 I 3 C 0
s caePb3.Scfld02_0      2939883 106 -  4147112 -tctttgacaAAAAC-------CTACTTGTAGCCATTGAAGCTCCTTCAGTGAGTTCATTTACTCGAGCCAAAATAAATGGTGTCACATTCTGTGATGCGATGTtttgttctct
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951    97545 113 +   152553 -TTTATGTTTAAAACAATTGTATTACTTGTAGCCATTGATGCTCCTTTTGTTAATTGATTGACCCGGGCGAGAATGAATGGAGTAACATCTTGGGAAGCAATGTTTTGTGATCT
i caeJap4.Scaffold4951 C 0 C 0

a score=3733.000000
s ce10.chrX             2202410 9 + 17718866 GAAAGTAAA
s caeRem4.Crem_Contig0  4429319 9 +  4500979 aaaaataat
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold629 33130355 9 + 33334924 GAAGGTAAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2939989 9 -  4147112 gaaaatgaa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    97658 9 +   152553 AAACacaaa
i caeJap4.Scaffold4951 C 0 I 33
e cb4.chrX             13675388 1254 - 21540570 I

a score=-4105.000000
s ce10.chrX             2202419 11 + 17718866 G------TTTTGAAGCA
s caeRem4.Crem_Contig0  4429328  7 +  4500979 tgattta----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33130364  1 + 33334924 T----------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2939998  1 -  4147112 g----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    97667 33 +   152553 I
e cb4.chrX             13675388 1254 - 21540570 I

a score=-12196.000000
s ce10.chrX             2202430 54 + 17718866 AAACAGGGAACTTTTCAAAAAATATTTTTAAAAAGTGCAACATATTTAAATTTT
s cb4.chrX             13676642 40 - 21540570 aaaaatgaaatacatcaaaaaggatttttagaatgt--------------tgtG
i cb4.chrX             I 1254 C 0
s caeRem4.Crem_Contig0  4429335 33 +  4500979 ---aatttggaaaatcaagaaata----tgacataa--------------taaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33130365 25 + 33334924 ----ATGA-AGTTGT-----------TTGGAAACACG-------------TTAG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2939999 34 -  4147112 ----gggATAGATGTCAAATGccaaatttgagaaac----------------aa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    97667 33 +   152553 I

a score=103561.000000
s ce10.chrX             2202484 136 + 17718866 AACTTACATGGCTTCTTGAACAGCTTGGTCAATTGCTTTCTGGATCGCATCTCCATCAGCTGCATATTTTTCAGGAATAGGACAAGCCAGAATAGTTCCATAAGGTAATCCGAGAGATTTCGAGGTTTCT-GAAACA
s cb4.chrX             13676682 137 - 21540570 AACTCACTGTGCTTCTCGGACAGCTTGATCAATAGCGTTTTGGATAACATCACCATCGCCAGCGTATTTTTCTGGTATCGGGCATGCAAGTATAGTTCCATAGGGGAGACCTAGTATTCTCGATGTTTCtggaaaca
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4429368 136 +  4500979 aacttacatggCTTCTCGTACAGCTTGATCTATTGCTTTTTGAATCACATCACCATCTGCAGCATATTTCTCGGGTATCGGACAAGCCAAGATAGTACCATATGGTAGTCCAAGAGATTTCGATGTTTCT-GAAACG
i caeRem4.Crem_Contig0 C 0 I 25
s caeSp111.Scaffold629 33130390 137 + 33334924 AACTTACATGGCTTCACTGATAGCTTGATCGATCGCATTTTGAATCAGATCTCCATCGGCAGCATTTTTCTCTGGAATGGGGCAGGCTAGAATTGTTCCATACGGTAATCCAAGTGATTTTGAGGTTTCTGAAAACG
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0      2940033 134 -  4147112 aacgtACATTGCTTCTTGGACAGCTTGGTTGATTGCTCTCTGGATTACATCTCCATCCGCAGCGTATTTCTCTGGAATTGGACACGCCAGAATTGTACCATATGGGAGACCgagagattttgaagtttctggaa---
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    97700 136 +   152553 AACTTACGTAGCTTCTTGAACGGCCGTGTCAATTGCTTTTTGAATAATATCTCCATCAGTGGCATAAGCTTCCGGAATTGGACAGGCAAGAACTGTTCCAGAAGGCAAGCCAAGTGATTTCGAAATTCCT-GAAACC
i caeJap4.Scaffold4951 I 33 C 0

a score=-9769.000000
s ce10.chrX             2202620 33 + 17718866 ------CTTCATGACTTT-----------------ACTTCATGAACCAATATTTTT
s cb4.chrX             13676819 19 - 21540570 -----------------------------------aaacaa--aaacaatgtttat
i cb4.chrX             C 0 I 10
s caeSp111.Scaffold629 33130529 21 + 33334924 -----------------------------------TTTCCATGTAATAATATTCTG
i caeSp111.Scaffold629 I 2 I 9
s caePb3.Scfld02_0      2940167 13 -  4147112 -------------------------------------------taatCATGATTGG
i caePb3.Scfld02_0     C 0 I 16
s caeJap4.Scaffold4951    97836 55 +   152553 AATCaacatatcgatttttgaattaGAATGAAAcgtttttaaaggaaaatgtttt-
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4429504 25 +  4500979 I

a score=337450.000000
s ce10.chrX             2202653 631 + 17718866  
s cb4.chrX             13676848 549 - 21540570  
i cb4.chrX             I 10 C 0
s caeRem4.Crem_Contig0  4429529 554 +  4500979  
i caeRem4.Crem_Contig0 I 25 C 0
s caeSp111.Scaffold629 33130559 541 + 33334924  
i caeSp111.Scaffold629 I 9 C 0
s caePb3.Scfld02_0      2940196 554 -  4147112  
i caePb3.Scfld02_0     I 16 C 0
s caeJap4.Scaffold4951    97891 569 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-43260.000000
s ce10.chrX             2203284 109 + 17718866 TGAATAAAAT---------------------------------------------------------------------GAAAATGTTTAGGTATACACtatt----------------------------------taaaatttt-----------caaaaaatgatttttaattttataGCGTTTAAGTTTTCACAAAAATTCCTAAGAATTTTTAG--TTGA
s cb4.chrX             13677397 204 - 21540570 ----ttaaattattttttatcaaaaatattattttcgaatacgttaaaaaacaaaagaacaGCTTCAtcaccaaacaaaaaaaatct-----tattctgacttttttcaactgattgtagtctagtttttgaacaaaaaaaacctttaaaaagaCCTCcaaaagaatttcgaaacgtttcaa--------attttctgaaaattgcagtGATTTTTCAAGG----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4430083   6 +  4500979 ----TGAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2940750 105 -  4147112 ----TGAAAT---------------------------------------------------------------------CGAAATGC-----TAAACTCGCTC----------------------------------AAAAACGTTCTGTACTACTGCGAAGAAAGTTCTCAGACATAATAACA--CATGCTGTTTAAGGAATTTCAGTTCCCttataa------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    98460  22 +   152553 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAtagaaatt----tgttttcaaaa------
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33131100   0 + 33334924 C

a score=-24543.000000
s ce10.chrX             2203393 62 + 17718866 TGAAACACTAATTTTGGCAGTTTTTGaataaaaaaa-------------------------------------tattattgttttatatgaaaatatt------------G
s cb4.chrX             13677601 79 - 21540570 ----------------------------TGAAACAACTTTCTATTCAGTGTTAATTTGGTGTTTTTAGCACCGTTTTAATTATAAACA---GCATATCTTATGAGGATTG-
i cb4.chrX             C 0 I 56
s caeSp111.Scaffold629 33131100 44 + 33334924 tgaaaaa----tcaa-------ctt---tGAAA----------------------------------------TATTGTTTATCCGTAGGTACATTTG-------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2940855 58 -  4147112 tgaaaaa--agtcagagaatgtttt---agaaaaaaatgtc--------------------------------tattatctactcaaa---aaatttc-------------
i caePb3.Scfld02_0     C 0 I 38
s caeJap4.Scaffold4951    98482  2 +   152553 tg-------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4430089  0 +  4500979 C

a score=-13878.000000
s ce10.chrX             2203455 42 + 17718866 GTATAAAATGTCGCAGTCTGCTAGAAAAAC------------------------------------GAACGTGGCAGC
s cb4.chrX             13677736 77 - 21540570 ATCTGAACT-TTTCAGAGCATTCGAAAAGTTCCGAAATATTATTTCAGGACTTCCtggtggaaaaaaaaactaaaaaa
i cb4.chrX             I 56 I 16
s caeRem4.Crem_Contig0  4430089 22 +  4500979 --------------------TTAGAAAAGT------------------------------------AAAACTAggaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33131144  7 + 33334924 -----------------------------------------------------------------------TGACAAA
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951    98484 14 +   152553 ------------------------------------------------------------gtaaaaaaaagCGA----
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2940913 38 -  4147112 I

a score=-13393.000000
s ce10.chrX             2203497 33 + 17718866 AATAAAAGTATCATTTA--------ATAATTTAAATT--TTCA
s cb4.chrX             13677829 29 - 21540570 ---aaaacaatttttaa--------ctcatgaaatt---ttca
i cb4.chrX             I 16 I 35
s caeRem4.Crem_Contig0  4430111  9 +  4500979 ----------------------------ataaa------ttca
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold629 33131151 12 + 33334924 -------------------------GTCGTTTA------ATCA
i caeSp111.Scaffold629 C 0 I 10
s caePb3.Scfld02_0      2940951 43 -  4147112 aataaacatattttcaaattttcttttcatataaTATATATCA
i caePb3.Scfld02_0     I 38 I 69
s caeJap4.Scaffold4951    98498 10 +   152553 --------------------------TTATTAAATA-------
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2203530 24 + 17718866 GAAACAAGTTCTAGCGAAAAAACC
e caePb3.Scfld02_0      2940994 69 -  4147112 I
e caeJap4.Scaffold4951    98508  0 +   152553 C
e cb4.chrX             13677858 35 - 21540570 I
e caeSp111.Scaffold629 33131163 10 + 33334924 I
e caeRem4.Crem_Contig0  4430120  6 +  4500979 I

a score=59665.000000
s ce10.chrX             2203554  96 + 17718866 TACTTTTCCATCAAATAACGCAATCGTAGCTGGATGACTTCCTGATGATCGAACTTTTTGCTCCAAACTTCTTGCAGTACTGC----AAAT-----------AATTTTTTA
s cb4.chrX             13677893 107 - 21540570 TACTTTTCCATCGAATAATGCAATAGTAGCTGGATGACTGCCAGCAGACCTAACTTTTTGTTCCAAACTACGAGCTGtgctga----aacttttttttttcaaaattttta
i cb4.chrX             I 35 I 1
s caeRem4.Crem_Contig0  4430126  95 +  4500979 AACTTTTCCATCGAACAATGCGATTGTAGCTGGATGACTGCCAGAAGATCGGACTTTCTGTTCCAAACTTTTTGCAGTACTGA----A------------TGAAAACTTTA
i caeRem4.Crem_Contig0 I 6 I 1
s caeSp111.Scaffold629 33131173 102 + 33334924 CACCTTTCCATCGAACAAAGCAATAGTAGCAGGATGACTCCCGGAAGATCTCACTTTTTGTTCCAGACTTCTAGCAGTACTAAATAGaata---------caaattatttt
i caeSp111.Scaffold629 I 10 I 23
s caePb3.Scfld02_0      2941063  97 -  4147112 TACCTTTCCGTCGAATAAAGCAATAGTAGCTGGGTGACTTCCTGAGGATCTAactttttgctccaaacttctTGCGGTACTGA----AACA---------C-AATTATTTA
i caePb3.Scfld02_0     I 69 I 3
s caeJap4.Scaffold4951    98508  98 +   152553 --CCTTGCCATCAAACAAAGCTATTGTCGCTGGCAAACTTCCAGTTGCTCGAACTTTGTCCTCGAGACTGTGAGCTGTGCTGA----AAAT------GTTCATAACTTTC-
i caeJap4.Scaffold4951 C 0 C 0

a score=136.000000
s ce10.chrX             2203650 10 + 17718866 ATAGTTTCAA
s cb4.chrX             13678001  8 - 21540570 --aagttgtt
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  4430222  8 +  4500979 --AAATTGAA
i caeRem4.Crem_Contig0 I 1 C 0
s caeJap4.Scaffold4951    98606 10 +   152553 Aaactttcaa
i caeJap4.Scaffold4951 C 0 I 22
e caePb3.Scfld02_0      2941160  3 -  4147112 I
e caeSp111.Scaffold629 33131275 23 + 33334924 I

a score=-962.000000
s ce10.chrX             2203660 16 + 17718866 ATGCATTTGCAATTCA
s cb4.chrX             13678009  8 - 21540570 ttttaa--------aa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4430230 16 +  4500979 ATATAAATGCAAAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2941163 14 -  4147112 --ATCAGTGCaaataa
i caePb3.Scfld02_0     I 3 C 0
e caeJap4.Scaffold4951    98616 22 +   152553 I
e caeSp111.Scaffold629 33131275 23 + 33334924 I

a score=-573.000000
s ce10.chrX             2203676 1 + 17718866 C
s cb4.chrX             13678017 1 - 21540570 a
i cb4.chrX             C 0 I 4
s caeRem4.Crem_Contig0  4430246 1 +  4500979 A
i caeRem4.Crem_Contig0 C 0 I 7
s caePb3.Scfld02_0      2941177 1 -  4147112 t
i caePb3.Scfld02_0     C 0 I 9
s caeJap4.Scaffold4951    98638 1 +   152553 C
i caeJap4.Scaffold4951 I 22 C 0
e caeSp111.Scaffold629 33131275 23 + 33334924 I

a score=133221.000000
s ce10.chrX             2203677 313 + 17718866 TACCTTAAATTATGAGGGTAAGGAAGTCCATGTGTGATCACTGTACTCTCCAGCGCGACAACTCCTTCTCCGCTAGCTAGAGCCTCCTTAACTTGTGGAGAAATTTGAAGAAATTTGGAAAACGAACGTTTTTGGCCAAAAAATCGAGAACACATAG----------TGAGAAATAGAGAGTAAT-------------------AGACCTAGAATGG---GGCTCGCACTATCTACAACACTACT------TTTTCTGGTTATCG-----AACAAGATCGATATG-----GAAAAAGATGGAG-AGAAGAGATAAG------ATTGCCC------TCTACACTCTGTTTTTT-ACTA----TC----TCAAAAGTG---------TCCATCA--------
s cb4.chrX             13678022 296 - 21540570 cacCTCAAATTATGCGGATAAGGTAACCCGTGAGTGATAACCGTACTTTCCAATGCAACAACACCTTCGCCATTTGCCAATGCTTCTTTTACAAGtggagaaatttgaagaaactttgaaaacgcCCGTTTTTGACCGAAAAAGTGAGAACACATGC----------TGAG----AGTGAATAA------------------------------------------------CTGCCAGGCAGTTCTAAGGTTATTCTGCTATCg--ggagaaaaaatcaata-------ataatAGATGAGA-A-AAGAGATAAT--ACCTGTCGTAc------t-----ccc--tttttt-ctta----tct---tttgAACTGTGTTGTGTCTCCGCCA--------
i cb4.chrX             I 4 I 55
s caeRem4.Crem_Contig0  4430254 328 +  4500979 CACCTCAAATTATGTGGATATGGCAATCCATGAGTGATTACAGTGCTTTCAAGAGCAACCACACCTTCTCCATTTGCTAATGCCTCCTTCACTtgagaagaaatttgaagaaatttggaaaatgtaCGTTTCTGACCGAAAAAACGAGTGCACATGG----------TGAGAAATAGAGAGTAAA----------AGGTCT---CGTCTTCAACTGT---GGCTTGTACTGTCTCCCACACTACT------TTCTTTGGTTATCG-----AACAAAATCAATAtga---caaaaaagatgaaa-agaaaagataat--GTCGATTGCcc------t-----ctctatttttt-gtta----tc----tctGAAATGTGTACTAG-TCTGTCA--------
i caeRem4.Crem_Contig0 I 7 I 3
s caeSp111.Scaffold629 33131298 329 + 33334924 TACCTTAAATTATGAGGATATGGCAGTCCGTGTGTGATAACTGTACTTTCCAAAGCAACAACACCTTCTCCATTTGCCAATGCTTCCTTAACCGACGAAGAAATGTTCAGAAACTTGGAAAAAGAGCGTGTTTGCccgagaaaatgatgatacATGA----------TGAGTAacagaaagtgag-------aaaaattccgaatgaATGGAACTAT---AACATGTACTATCTACGACAA-------------TTTGGTTATCG-----AACAAAATCAATA-GA---GTGAATAGATGTGG-A-AAAAGATAATACGTCGATTgccctctcttt-----ctctgtttttt-gttatctCTC----TCTGATTTA---------CCCGTCA--------
i caeSp111.Scaffold629 I 23 I 11
s caePb3.Scfld02_0      2941187 333 -  4147112 taCCTCAAGTTATGTGGATAAGGCAACCCGTGTGTAATAACAGTACTTTCAAGAGCAACAACTCCTTCTCCATTTGCCAACGCTTCTTTCACTTGTGATGAAATGATcataaatttggaaaaagaacgTTTTTGTCCAAGAAATCGAGAATACATGA----------TAAATAATAGAGGGTAAA-GAGACTAAAATGACTGAATGAAT--AACTATCGCCACATGCACTATCTACAACACTATT------CTTTTCGGTTATCG-----AACACAATCAATATGG---GAAAGTAGATGTAGCG-AAAAGATAAT--GTCGATTGCcc------t-----ctctgtttttt-gtta----tc----tctGAATGA---------CCCGTCA--------
i caePb3.Scfld02_0     I 9 I 11
s caeJap4.Scaffold4951    98639 358 +   152553 TACTTCAAATTGTGTGGGTATGGAAGTCCATGAGTGATTACTGTGCTTTCCAAAGCCACTACTCCTTCTCCATTTGCCAGTGCTTCCTTCACTCGCGGTGAAACATGTAGGAACTTTGAGAAACCACGTTTGTGATAGAAACAACGTGAGTACATAATAATAACAGTTGAATAgtagtaaaaaaaagaaaataaaataac----gcagtcaaaaaaT---TGCTTGTCTTGTCTATCTCTAAACT--------GCTCGGTAATCGTCAAGAACAAGATCGATGTTACCCGTAAGTAGATAAAG-AAATAAGATAAc---------ggtc------t-----cttttttttttggtta----tctTGGTTTGAATGTCATTCTG--TCCGTTGGTTTATTG
i caeJap4.Scaffold4951 C 0 C 0

a score=-4050.000000
s ce10.chrX             2203990 22 + 17718866 TTTGATAAGA------TTGTCATTTTTA------
s caeRem4.Crem_Contig0  4430585 18 +  4500979 TCCAAT----------ATTGCATTTTTA------
i caeRem4.Crem_Contig0 I 3 I 48
s caeSp111.Scaffold629 33131638 27 + 33334924 TCC-ATAAACTGTTGTATTTTATCACAA------
i caeSp111.Scaffold629 I 11 C 0
s caePb3.Scfld02_0      2941531 22 -  4147112 TCCAATAAAC------GTTGCATTTTAT------
i caePb3.Scfld02_0     I 11 C 0
s caeJap4.Scaffold4951    98997 30 +   152553 TTTGATAAGAAA----TTCGCAATATTGACCATA
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13678318 55 - 21540570 I

a score=-4498.000000
s ce10.chrX             2204012 32 + 17718866 CGAATTTC-----------AAAGTCCAAGCT------------------TTTTTTTTGTGA
s caeSp111.Scaffold629 33131665 60 + 33334924 AGAATTCTGATAAGATAGTGAATTCGCAATT-CAAATGCAGCAGAAAAGTTTATTATTGGA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2941553 61 -  4147112 CAGACCATGATAAGATAGAAAATTCGCAATTGTGAAAGTTTTATTACAGTGtattccgaga
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    99027 26 +   152553 ----------TGGAacatgaaattt--aatt------------------tttattc-----
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13678318 55 - 21540570 I
e caeRem4.Crem_Contig0  4430603 48 +  4500979 I

a score=202.000000
s ce10.chrX             2204044 3 + 17718866 AGa
s caeRem4.Crem_Contig0  4430651 1 +  4500979 --A
i caeRem4.Crem_Contig0 I 48 I 2
s caeSp111.Scaffold629 33131725 3 + 33334924 AGa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2941614 3 -  4147112 aaa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    99053 2 +   152553 -gg
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13678318 55 - 21540570 I

a score=655655.000000
s ce10.chrX             2204047 1077 + 17718866  
s cb4.chrX             13678373 1067 - 21540570  
i cb4.chrX             I 55 C 0
s caeRem4.Crem_Contig0  4430654 1080 +  4500979  
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold629 33131728 1010 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2941617 1054 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    99055 1052 +   152553  
i caeJap4.Scaffold4951 C 0 I 1170

a score=15049.000000
s ce10.chrX             2205124 102 + 17718866 CGG----AAAAATGAATCGAGCTAAGCATTATGGGAGCA--TGAGAGACCGTCAACTCTGACGTGA---------------TTGGCATAT-----G-----------CA----------CTACTGGATGATCATCGGTGATTACACGTA
s cb4.chrX             13679440 129 - 21540570 GACAGAGGGGGGAGAATGGAGC-ATTTAGAAGAA----A--GAAAGG------TATACTGACGTGAtttttttCGTGCTTCTTGGCAGATTCG--ATTTTTGTTAAGCAAGCGG-----AGACTGGATAAATCGGGTTGATTACACGTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4431734 102 +  4500979 cac-----gaaaaaaatgga------tagaagaagagga--gaaagg------tATACTGACGTGA---------------TTGGCAGATCGC--A-----------CAGACAGTTAACAGACCGGATGATTGGTGTTGATTACACGTA
i caeRem4.Crem_Contig0 C 0 I 583
s caeSp111.Scaffold629 33132738 106 + 33334924 cag-gaggaaaaagaatgaa------aaatgggagaggaagagaagg------taTACTGACGTGA---------------TTAGCAGATTACAAA-----------CACACTGTT---AGACCGGATAATTAGTTCTGATTACACGT-
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2942671 103 -  4147112 cag-gaaaaaaaagaatgga------aaaggGGAGAGCA--TGGAGG------TATACTGACGTGAT--------------TTGGCAGATTTC--G-----------TAGACTGTT---AGACCGGATGATTAGTGTTGATTACACGT-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I

a score=3387.000000
s ce10.chrX             2205226 9 + 17718866 GGTGACACG
s cb4.chrX             13679569 8 - 21540570 -ATCACACG
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33132844 9 + 33334924 GGTGACACG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2942774 9 -  4147112 GGTGATACG
i caePb3.Scfld02_0     C 0 I 621
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=-1047.000000
s ce10.chrX             2205235 4 + 17718866 TGTC--
s cb4.chrX             13679577 4 - 21540570 --TTTC
i cb4.chrX             C 0 I 79
s caeSp111.Scaffold629 33132853 3 + 33334924 --TTT-
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=441.000000
s ce10.chrX             2205239 70 + 17718866 TGTG---ATTAATATCGCGGAAAGAAGTGTGGGGTATATTGAAGTTGGCATACTATCATAGTaaatctttcca
s caeSp111.Scaffold629 33132856 59 + 33334924 TGTGGAAATTTATATTGTGGGGAT--------------TTGCAGTTGGAAGAATAAACGTGAAGATGTTTTCA
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13679581 79 - 21540570 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=-1901.000000
s ce10.chrX             2205309 19 + 17718866 aaaaaatttttggaaattt------
s cb4.chrX             13679660 15 - 21540570 ---AAA-------AAATATCGCGTT
i cb4.chrX             I 79 C 0
s caeSp111.Scaffold629 33132915 19 + 33334924 --GAGATCCCTTCAAATATTT----
i caeSp111.Scaffold629 C 0 I 247
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=-3514.000000
s ce10.chrX             2205328 591 + 17718866  
s cb4.chrX             13679675 690 - 21540570  
i cb4.chrX             C 0 I 170
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeSp111.Scaffold629 33132934 247 + 33334924 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=0.000000
s ce10.chrX             2205919 182 + 17718866 ATTTTAAGTAGTTCCTTTGAATGTGACTGTTTTTAAGTTATTTATATTTTTGTGGTTTGTTTTTCTTAAAGAAAAAGAGCCAATCGGGTAAATCGTAGGTTAGGTGCTCAAAAATTGACACTGAAAAATTTGCCACCAAAAAGGTAAACTTGATTTGTACCCTAAAATTATTTTACGCGGGT
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13680365 170 - 21540570 I
e caeSp111.Scaffold629 33132934 247 + 33334924 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=-780.000000
s ce10.chrX             2206101 245 + 17718866 ATTCGAATATTTTGCTTTTTTATTTTAACTTTATATATATTTCTACGCTTATCGAAAGTATATATGTATAAGAAAAAATTTTTGAAAAAAAGGAACTTCAACAATTTTTTTACTTGAAAATCACGTTAAAAAAAAGAAAAGCTAATTTTTTCCAATGTT---TCTTTTCATGTTTCAGCAACCATTTGACTATAAATTGATGATATGTATTCTTTAAATGCCAA--GCTTAGATTT---TACTTTGTC----ATTCC
s cb4.chrX             13680535 194 - 21540570 aattgaaaatgttatttttccttctttcctgAGT-----TTTTTCCGTTTGT----------------TcccaaacaatttttgacGGATCGCTGCTTCAAtaaaagtttt-ctagaaa--tattttatAGAGA--------TGGTCGCTCCTCAAGTTCTGTCTTTCTatatttca-------------tat----------------ttcttt--ATTCCAATTTCCTTGATTTTTATACACTGTCTTGAACACT
i cb4.chrX             I 170 C 0
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeSp111.Scaffold629 33132934 247 + 33334924 I
e caeRem4.Crem_Contig0  4431836 583 +  4500979 I

a score=147.000000
s ce10.chrX             2206346 3 + 17718866 TGA
s cb4.chrX             13680729 3 - 21540570 AAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4432419 3 +  4500979 TAA
i caeRem4.Crem_Contig0 I 583 C 0
e caePb3.Scfld02_0      2942783 621 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeSp111.Scaffold629 33132934 247 + 33334924 I

a score=975.000000
s ce10.chrX             2206349 26 + 17718866 AGATCACTGAGCAACATGCTCATTCA
s cb4.chrX             13680732 20 - 21540570 TGACCAATCACCACTGTGGT------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4432422 20 +  4500979 AGTTCAGCGAGCAGCTTGAT------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2943404 26 -  4147112 AGTTCATTGAACATCTTGATCTTTTA
i caePb3.Scfld02_0     I 621 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e caeSp111.Scaffold629 33132934 247 + 33334924 I

a score=54331.000000
s ce10.chrX             2206375 165 + 17718866 CATTTGCTAC--------CGCA-TTTTCCCGTCTTTT--ATCTCT------AAAATCAAATGGTCAGCA-----------------------------------TACTCAAACATTCCGTTAAGCAAC----GCTTA-----TTCCTCATTCTTCATCTTTTTTCGTTTTCATCATCACTCTACAACACAACAAAAAAG-AATGCACAAACAT-----AA-TTTGGCGTGTGC-
s cb4.chrX             13680752 211 - 21540570 CATATGCCATTGGACATACAAA-TATTCCTGTCTTTTTGGTGACTCGCAAAAATATCTAATGGTCAGTAGTGAGCCAACT----TCTTTCATAACGCACATACGTACTCAAACATTCCATTTGCTCAAAGAAgctta---------------ttcttcttttttt-tcatcatcatcactt-ataacataacaaaaaattcacaaacagacacacaaaCATTTTTGCGTGTGC-
i cb4.chrX             C 0 I 19
s caeRem4.Crem_Contig0  4432442 177 +  4500979 CAACTGCTAC--------CGCA-TATTCCTGTCTT----GCCACTTGCAAAAATATGTAATGGTCAGCAGGAGCCCAACT----CCC---------AACATTCTTACTCAAACATTCCGTTGCCCCTCTG--GCTTA---------------TTCTCATTCT-------TCATCATCACTT-AtaacacaacaaaaaagaaatgcaCAAACAC-----CGTTTTTGCGTGAGC-
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold629 33133181 199 + 33334924 CATCTACCAC--------CGCAGTATTCCTGTCTTTCT-GCCACTTGCAAAAATATCCATTGGTCAGCAGGAGCCAACTTCCTCCCC---------TACAGTCATACTCAAACATTCCGTTGCTTTA-----Gcttattcctttttttcttcttctcattcttct----tcatcatcactC-ATaacacaacaaaaaag-aatgcaCAAACAA-----CA-TTTTGCGTGTGGC
i caeSp111.Scaffold629 I 247 C 0
s caePb3.Scfld02_0      2943430 183 -  4147112 ------CAAT--------CGCA-TATTCCTGTCTTCCT-GCCACTTGCAAAAATATCTAATGGTCAGCAGGAGCCAACTT----CCC---------AACAGTCATACTCAAACATTCCTTTTGCCTA-----GCTTG-----TATTCAttccttctcattcttct----tcttcatcactc-ataacacaacaaaaaag-aatgcaCAAACAA-----CA-TTTTGCGTGTGGC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I

a score=8835.000000
s ce10.chrX             2206540 20 + 17718866 TCTTACACTCTCGCCACTTT
s caeRem4.Crem_Contig0  4432620 19 +  4500979 TCTCACAA-CTCGCCACTTT
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold629 33133380 20 + 33334924 TCTTACACTCTCGCCACTTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2943613 20 -  4147112 TCTTACACTCTCGCCACTTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13680963 19 - 21540570 I

a score=84349.000000
s ce10.chrX             2206560 171 + 17718866 TACACTCATATCGTCTTCAGAGGTTGTTTGACGTT-GCCGG----TGGCCACACAGCTTGC--CGCGCGGCAAAAGCATATCATTGACTCATAGAGGAAGGCTTTACCGCCGTTGTTAGACACGGGGAAGCATGTGCAGCGTGTTGTGCAACAACTTTTTGTGTT---GTGCATTAAGAGA
s cb4.chrX             13680982 167 - 21540570 AAGACATATATCGTCTTCTGAGGTTGTTTGACGTTGGCCAGCGCCCGGCCACACAGCTTGCTGCGCGCGGC----ACATATCATTGACTCATA----AAGCATTTACCG-CGGTTTTTTGCC--GTGGCGCATA---AGCATCTTGTGCAACAACTTTTTGTGCTCTGGTGCacttggaaa
i cb4.chrX             I 19 I 1344
s caeRem4.Crem_Contig0  4432639 148 +  4500979 TACACTCATATCGTCTTCTGAGGTTGTTTGACGTT-GCCGG----TGGCCACACAGCTTGC--CGCGCGGC-TCGGCATATCATTGACTCATA----AATGCTAGAC------------------TGGCACATA---AGCATGTTGTGCAACAACTTTTTGTGTTGTGCTGCACTTGGAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33133400 154 + 33334924 TACACTCATATCGTCTTCAGAGGTTGTTTGACGTT-GCCGG----CGGCCACACAGCTTGC--CGCGCGG-----ACATATCATTGACTCATA----AAGAATCTACCG-CGTTGCTAGAC----TGGCACATA---AGCATGTTGTGCAACAAGTTTTTGTGTT---GCCCACttggaaa
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2943633 152 -  4147112 TACA--CATATCGTCTTCAGAGGTTGTTTGACGTT-GCCGG----TGGCCACACAGCTTGC--CGCGCGG-----AGATATCATTGACTCATA----AAGACTCTACCG-CGTTGCTAGAC----GGGCACATA---AGCATGTTGTGCAACAACTTTTTGTGTT---GTGCACTtggaaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I

a score=4363.000000
s ce10.chrX             2206731 26 + 17718866 ---GAGTTGCTCTCTTCCGGCGAATCAAA
s caeRem4.Crem_Contig0  4432787 25 +  4500979 ----ATATTCTCTCTTCCGGCGAGTCAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33133554 27 + 33334924 atatattttctttc--cTGGAGAGTAAAA
i caeSp111.Scaffold629 C 0 I 627
s caePb3.Scfld02_0      2943785 29 -  4147112 atgctttttttttcttccggaGATTGAGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13681149 1344 - 21540570 I

a score=1364.000000
s ce10.chrX             2206757 14 + 17718866 GATTTTGGAAACCA
s caeRem4.Crem_Contig0  4432812 14 +  4500979 CACTTTAGAAACCA
i caeRem4.Crem_Contig0 C 0 I 747
s caePb3.Scfld02_0      2943814 10 -  4147112 ----ATCAAAACCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13681149 1344 - 21540570 I
e caeSp111.Scaffold629 33133581 627 + 33334924 I

a score=370.000000
s ce10.chrX             2206771 69 + 17718866 TGTTTGTGATAGGGGGGAGTTCAAAGAACATTTCGATTTAGGACAACTT----TTATATATTCAGAAATCAGA
s caePb3.Scfld02_0      2943824 69 -  4147112 AGGGAATGGGAGTGGGAg----aaagaatagtttttttgaaaatagatgaTAATTGTATTTTGAGAAAGCAAA
i caePb3.Scfld02_0     C 0 I 856
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13681149 1344 - 21540570 I
e caeSp111.Scaffold629 33133581 627 + 33334924 I
e caeRem4.Crem_Contig0  4432826 747 +  4500979 I

a score=0.000000
s ce10.chrX             2206840 1296 + 17718866  
e caePb3.Scfld02_0      2943893  856 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13681149 1344 - 21540570 I
e caeSp111.Scaffold629 33133581  627 + 33334924 I
e caeRem4.Crem_Contig0  4432826  747 +  4500979 I

a score=91.000000
s ce10.chrX             2208136 1 + 17718866 T
s caeRem4.Crem_Contig0  4433573 1 +  4500979 T
i caeRem4.Crem_Contig0 I 747 C 0
e caePb3.Scfld02_0      2943893 856 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I
e cb4.chrX             13681149 1344 - 21540570 I
e caeSp111.Scaffold629 33133581 627 + 33334924 I

a score=279.000000
s ce10.chrX             2208137 44 + 17718866 TTATCACCAGACTAGAATCACT------TGCCACCT--ATGCGTACTCATTG
s cb4.chrX             13682493 43 - 21540570 TTGTCACTAAACTATGTTTGTT------TATCATCATCACTCGTCTTCT---
i cb4.chrX             I 1344 C 0
s caeRem4.Crem_Contig0  4433574 47 +  4500979 TAGTCATCAGACTACACTCACCCTGAAGTATCCTCA--GATATTCCTCA---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33134208 42 + 33334924 TTTTCACCAGACTAGACTCATTTGGCAATCTCCTTA--ACGTTT--------
i caeSp111.Scaffold629 I 627 C 0
e caePb3.Scfld02_0      2943893 856 -  4147112 I
e caeJap4.Scaffold4951   100107 1170 +   152553 I

a score=7380.000000
s ce10.chrX             2208181 20 + 17718866 CGTCTCCGTTTTCGGATATT---
s cb4.chrX             13682536 19 - 21540570 ----TCCGTTTTAGGAAATCTTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4433621 17 +  4500979 ----Tccgtttttggaaaatt--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33134250 20 + 33334924 CTTGTCCGTTTTAGGAAATT---
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2944749 20 -  4147112 CATGTCCGTTTTAGGAGATT---
i caePb3.Scfld02_0     I 856 C 0
e caeJap4.Scaffold4951   100107 1170 +   152553 I

a score=212470.000000
s ce10.chrX             2208201 472 + 17718866  
s cb4.chrX             13682555 496 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4433638 477 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33134270 472 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2944769 458 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   101277 505 +   152553  
i caeJap4.Scaffold4951 I 1170 I 16

a score=12262.000000
s ce10.chrX             2208673 23 + 17718866 AATTTAAAGGTCTTCTTTTT-------------CTC
s cb4.chrX             13683051 28 - 21540570 AATTGAAatgtcttcttct--------cttcatcTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4434115 29 +  4500979 AATTGAAaggtcttcttctc-------cttcttctc
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33134742 31 + 33334924 AATTGAAAggtcttctcttc-----tccatcttctt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2945227 36 -  4147112 AATTGAAaggtcttctttttctccatacATCTTCTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   101782 16 +   152553 I

a score=433282.000000
s ce10.chrX             2208696 788 + 17718866  
s cb4.chrX             13683079 736 - 21540570  
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4434144 763 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold629 33134773 765 + 33334924  
i caeSp111.Scaffold629 C 0 I 126
s caePb3.Scfld02_0      2945263 778 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   101798 811 +   152553  
i caeJap4.Scaffold4951 I 16 C 0

a score=-5265.000000
s ce10.chrX             2209484  7 + 17718866 ---------GATTATA---
s cb4.chrX             13683817  1 - 21540570 ---------------a---
i cb4.chrX             I 2 I 6
s caeRem4.Crem_Contig0  4434909  1 +  4500979 ---------------a---
i caeRem4.Crem_Contig0 I 2 I 8
s caePb3.Scfld02_0      2946041  7 -  4147112 ---------TTTCACA---
i caePb3.Scfld02_0     C 0 I 92
s caeJap4.Scaffold4951   102609 19 +   152553 TATCAATTTGACCGAACTA
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold629 33135538 126 + 33334924 I

a score=-1479.000000
s ce10.chrX             2209491 3 + 17718866 TCT--
s cb4.chrX             13683824 3 - 21540570 CCC--
i cb4.chrX             I 6 I 5
s caeRem4.Crem_Contig0  4434918 3 +  4500979 tat--
i caeRem4.Crem_Contig0 I 8 I 127
s caeJap4.Scaffold4951   102628 3 +   152553 --TGA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2946048 92 -  4147112 I
e caeSp111.Scaffold629 33135538 126 + 33334924 I

a score=-7756.000000
s ce10.chrX             2209494 112 + 17718866 CGATTATACAAA--TCACTTGCTCCGGG-TTTTTTTCTCTAGATTTCCATCGGTTTTGGGACTGCACTGGAGATTTTTGGATGAACATGTGAAAATTTTTTAAATA-----------------ATGCACAGG-
s cb4.chrX             13683832  51 - 21540570 TGCTTGAAAAAACCTCACAAAATCGGGGATCCCCTTCTCT----------------------TGCCCT-----------------------------TTTT------------------------------G-
i cb4.chrX             I 5 C 0
s caeJap4.Scaffold4951   102631 104 +   152553 GGCTTGTAGAAA-CCCACG----------TTCATTTCAGTCATACTTTATCAGTTTT-----TACCCC----------ATCTTAACACCCGTGA---CTTTAAAAAGGAAGGAAGAATAAAATATGCCGTGGT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2946048  92 -  4147112 I
e caeSp111.Scaffold629 33135538 126 + 33334924 I
e caeRem4.Crem_Contig0  4434921 127 +  4500979 I

a score=414.000000
s ce10.chrX             2209606 2 + 17718866 CC
s cb4.chrX             13683883 2 - 21540570 CC
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33135664 2 + 33334924 CC
i caeSp111.Scaffold629 I 126 C 0
s caeJap4.Scaffold4951   102735 2 +   152553 TT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2946048 92 -  4147112 I
e caeRem4.Crem_Contig0  4434921 127 +  4500979 I

a score=-10655.000000
s ce10.chrX             2209608 50 + 17718866 GAACAGTCACA----------CTTTGAAAATAAATTGATGTGATCTATGCAGATAGT-------------TGC
s cb4.chrX             13683885 30 - 21540570 ------TCCCA----------CCCTGATCGCAAATTCAGTAGTCGT---------------------------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33135666 51 + 33334924 ---------TAATCGTAACACTCTAGATGGTAATTTGAAAAGACAAATTCGACACGA-------------tgg
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2946140 39 -  4147112 ---------------------TACCGATGGTAATTTGAAAAGACAAATTAGAGGAAA-------------tcg
i caePb3.Scfld02_0     I 92 C 0
s caeJap4.Scaffold4951   102737 63 +   152553 TTATAATTATG----------TTTTCTAAACGTTTTAAAGTGATAAATCAGGCTAAAATCGACTTTAGGTTGG
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4434921 127 +  4500979 I

a score=76257.000000
s ce10.chrX             2209658 185 + 17718866 -AAATTTC--------AAAAAACTCTACCCCTGAACACT--GTCATT------CTGCCATGCCATAATTTA-----GTTCAG-TCGGATGAATGACCTTTCGTTGGCCAATT-GGATGCGAAACACTGGACGGCACCGAATCGGCACGGCAAGTGGTACTGACAA-----GCGACAACAAAGACGGATAG-----------A--CCATCAGT-TAA------------------------------------ATCAAGATAAGA
s cb4.chrX             13683915 199 - 21540570 -----------------------------------------------------------TGCCATAATACA----CAGTCAAATTGAATGAACGACCTTTGGCTGGTCAATTCCGATGCGAAACACTGGACGGCACCGAATCGGCACGGCAAGTGGTACTGACGACCACCGCGACAACAAAGATAGATCGTCGGCCCAACTA--CTAACTGTATCTCATgttaaacagaaaaatgaagaaaagtagagagagaaagagataaGA
i cb4.chrX             C 0 I 3
s caeRem4.Crem_Contig0  4435048 195 +  4500979 -agatttt--------tttgaaatctc-----ccTTTCT--GTCATGAATTCGTTGTCGTGCCATAATACAGTTTGATTCAA--TGAATGAACGACCTTTGGCTGGTCAATT-TGATGCGAAACACTGGACGGCACCAGATCGGCACGGCAAGTGGTACTGACGGCCACTGCGACAACAAAGATAGATAG-----------A--CTTACTGT-TCT------------------------------------ATCAAGATAAGA
i caeRem4.Crem_Contig0 I 127 I 18
s caeSp111.Scaffold629 33135717 172 + 33334924 -agatttt------caaaaaaggtcTCTCAAGCGAGTCA--ATCGCGAATTGGCCACCCTGCCATAATACA-----GTTCAA-TTGAAAGAACGACCTTTGGCTGGTCAATT-TGATGCGAAACATTGGA-----------CGGCACGGCAAGTGGTACTGACGACCACTACGACAACAAAGATAG-----------------------------A------------------------------------ATCAAGATAAGA
i caeSp111.Scaffold629 C 0 I 3
s caePb3.Scfld02_0      2946179 186 -  4147112 -caatttc--------aaaaaagtctttCTCCCCTTTCGTCGTCGTGAATTCATCACCATGCCATAATACA-----GTTCAA-TTGAAAGAACGACCTTT-GCTGGTCAATT-TAATGCGAAACACCGGA-----------CGGCACGGCAAGTGGTACTGACGTCTACAGCGACAACAATGATAGATAG-----------T--ACTACTGT-TCA------------------------------------ATCAAGATAAGA
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold4951   102800 200 +   152553 GTAATTCGACATGAAGATGAAGACCCCTG------------ACCGCAAATTCAAAGTCATGCCGCAGTTCA---ACATCCAA-TTGGGTGGACGACCTTTGGCTGGTCAATT-TGACACAAAACACCGGACGGCACCGATTCAGTAGCGTGAATGGTACTGACGACCACTGCGTCAACAAAGACGGATAG-----------AGGCCTAGTGTGTTC------------------------------------ATCGAGATAAGA
i caeJap4.Scaffold4951 C 0 I 7

a score=-7479.000000
s ce10.chrX             2209843 14 + 17718866 ----------ATTGCTTGTGAAC---------T
s cb4.chrX             13684117 22 - 21540570 ----------ATCATTTGGTCATCACGTAATT-
i cb4.chrX             I 3 C 0
s caeSp111.Scaffold629 33135892 12 + 33334924 ----------ATTACTTCA-CAT----------
i caeSp111.Scaffold629 I 3 C 0
s caePb3.Scfld02_0      2946368 13 -  4147112 ----------ATTACTCTGCCag----------
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold4951   103007 12 +   152553 ACAGCGCAAAAT---------------------
i caeJap4.Scaffold4951 I 7 C 0
e caeRem4.Crem_Contig0  4435243 18 +  4500979 I

a score=-12783.000000
s ce10.chrX             2209857 38 + 17718866 TTTTCAGATATCGCATTAGGTCGAGAA------GTTAATCAAAT
s cb4.chrX             13684139 30 - 21540570 TTCACAGCTAGTCTCCGTAGTCGGAA--------------AAAT
i cb4.chrX             C 0 I 47
s caeRem4.Crem_Contig0  4435261 36 +  4500979 TTTTCAGGTAATTCAAATGATTGAAG--------TTCTTCAAAT
i caeRem4.Crem_Contig0 I 18 I 94
s caeSp111.Scaffold629 33135904 36 + 33334924 TTTCCAGAC-GTGGAAGGGAAGAGATA-------CTAAGTAGTC
i caeSp111.Scaffold629 C 0 I 18
s caePb3.Scfld02_0      2946381 37 -  4147112 ttttcagacttttgaaatgtaaaaaaa-------cGCATCAGAT
i caePb3.Scfld02_0     C 0 I 11
s caeJap4.Scaffold4951   103019 40 +   152553 GTTTCAGA--ACAGTTATGTTCTAAGTCTTCACGCTCATAAT--
i caeJap4.Scaffold4951 C 0 C 0

a score=-21030.000000
s ce10.chrX             2209895 71 + 17718866 CATTGCTTTTTG------AAGAC-----------ATCACTGAAAGTGCCAA--TATTTTAGTA---ATTGATATTTACACAAGGGACCCCACT--
s cb4.chrX             13684216 73 - 21540570 CATTGTTTCCCAGGTGGCAAAAGG-----TTGA-ATTATTGA---CGACAT--ATTGCCGCTT---GTCGTAAGCTAAACAA------CTCCA--
i cb4.chrX             I 47 I 5
s caeSp111.Scaffold629 33135958 52 + 33334924 AATC--------------AAAAG-------------TGTTGA---CGCCAATCAAGATTGCTC---ATCAG--ATTATAACG------CTGCT--
i caeSp111.Scaffold629 I 18 I 9
s caePb3.Scfld02_0      2946429 68 -  4147112 TATCATTTGCCA-TTGGTAGAAA-------------CACTGA---CGCCAA--AAGATTTCTCAGAATTAGCAATCAGGGAA------TTGCA--
i caePb3.Scfld02_0     I 11 I 10
s caeJap4.Scaffold4951   103059 79 +   152553 AATTACATACAT----ACAAAAGGGCAGCTTGATAATGTTGT---CATTGG--CATATGTCTA-GGACGGTGACGTAAAAGA------GCACTTT
i caeJap4.Scaffold4951 C 0 I 15
e caeRem4.Crem_Contig0  4435297 94 +  4500979 I

a score=-43316.000000
s ce10.chrX             2209966 118 + 17718866 -------------GAACTCAT----CAATTTTAAAATGTGAT-----TTCCAGTTGATGTAAGCAACCAAGAAAAAGG-------CATATTAC-------TTCAGGTTTTTTGCACTTTTATTTTCCAATCTCACAAAT--GTGGGCGT-------------AT-----------G----ATGA-
s cb4.chrX             13684294 120 - 21540570 -------------CATTCAAGT---CAGAATACCTatataat-----ta---gaaaaaaaat-------------------------tgttgtttccg--ttcagattttttgtacTTCAATGTGA------------TTCGTGGTTAGTTTTTCGTTCCATTT-TGAACATCGGGGTCAGTCA-
i cb4.chrX             I 5 C 0
s caeRem4.Crem_Contig0  4435391 134 +  4500979 -------------aatttcaga---tattatttctTAATCAT-----TATCTGTACAAATATAT---------------CCTTGGCATGTTATATATC--Ctcgcaattttta-atttaagcCTGATCATTTGTCCAGTCCGTGGGTGGTTTAGAG------TT-TAAACATTCGG----GTCA-
i caeRem4.Crem_Contig0 I 94 C 0
s caeSp111.Scaffold629 33136019 136 + 33334924 -------------GAATCCATG---TACTTATCAACTGCCATGAAACTA---GTATATATATATGTTCAATTGCATTGCCCTTTTTATATTGCacttg--ttca----------ttttcagcttgaTCGTTTATTCCGTCTGTGGGTGG-------------TTGTGAACATTCGG----GTCA-
i caeSp111.Scaffold629 I 9 C 0
s caePb3.Scfld02_0      2946507 119 -  4147112 -------------GAATTCATGAACCACTAATCATCTGTTTT-----TA---GT-----------TTCCTCAGCACGG-ATTAGTCATGTTGTACT----TTCA----------GTCTTTGTTTGGTCATTTATTCAACTCGTGGGTGG-------------TT-TGAACATTGGG----GTCA-
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold4951   103153 135 +   152553 GAAATTGTCGAGGGACTCGAAG---AATTTTTCAGAttcttt-----tt---ctat---------ttcatTAGAACTG-ATGAAGCATATCACTTGCCATTTCAGTAATTCTCTGATAAATTCCAGATATTATAAAAATATGTAGGTCC-------------CT----------------GTTAA
i caeJap4.Scaffold4951 I 15 I 35

a score=3396.000000
s ce10.chrX             2210084 18 + 17718866 G----CGGCACACTCACGCATC
s cb4.chrX             13684414 11 - 21540570 G----CGGCACAC-------TT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4435525 11 +  4500979 G----CAGCACAC-------TT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33136155 15 + 33334924 GGCACAGGCACAC-------TT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2946626 11 -  4147112 G----CGGCACAC-------AT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   103288 35 +   152553 I

a score=297924.000000
s ce10.chrX             2210102 374 + 17718866 CAAAAGTTTGCCGGATTCA----TAAAGTAGTATAGAAGTGTCTCACGAGCGTGGA---------GGG-------------TGGCGCTGGC-C-CGAAAAAAAAATACGCTGAGACTGTAT-----TGGAAAAGTTTAATCACGTATTTCGCTCGACTCGTCATTTATTTGAGCCTTAGTTTGTG----TCTCGCCGTTTTTGGTTTTCCGCCTCTCCCTCATT-CCCC---------CCGGTCTATTCCGAATTTGCCGCGACCCATCACAGGTCACGAACTTTAGTGCCCGCACGCCGCGTTTTGTATCTGCCTGCGCATCTACACGCTGACATACTAT------------TTGTTT--GATCCGCGC--GGAACTGCCACAAACAACAACAATC--TGCGTCCGGCGAAGACGTCGTCACCATATAC------CCATCTATT----
s cb4.chrX             13684425 396 - 21540570 CTCAAGTTTGCCGG----A----CAAAGTAGTACAGGAGTGTCTCACGATCGAGGG---------AGGTTTGGGCCCGGAATGGAGCGAGCGcgcactgaaaaaa----aaga-actgtaGAGGGGAGGAAAAGTTTAATCACGTATTCCGC----CTCGTCATTTATTTGAGCCTTC--------------Gtcgttttttggttt------tctcctTCCTCAGCCCCAAAAACCATCGGT---TTCCGAATTTGCCGCGACCTATCACAGGTCACGAACTTTAGTGCCCGCACGCCGCGTTTTGTATCTGCCTGCGCATCTCCACGCCAGCATACTATTACGCGTCGGGGTCGCTCCGCATCCGCGCGAGAAACTGCCACAAACAACAACAATCCGCGCGTCCGGCGAAGACGTCGTCACCATATACCACCACCTACCTGTT----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4435536 364 +  4500979 CTCAAGTTTGCCGGATTCA----CAAAGTAGTACAGAAGTGTCTCACGATCGAGGG-------------------CC----TGGCGCCGGCGC-CGCAGAAAAAA----CTGAGACTGTAT------GGAAAAGTTTAATCACGTATTCCGCTCGACTCGTCATTTATTTGAGCCTTCTCGCGAT----GCGGCCCGTTTTTGGTTTTCCGCCTCTCCTTCCTTTTCCC---------TCGAT---TTCCGAATTTGCCGCGACCTATCACAGGTCACGAACTTTAGTGCCCGCACGCCGCGTTTTGTATCTACCTGCGCATCTACACGCTAGCATACTAT------------TCACTC--AATCCGCGC--GGAACTGCCACAAACAACAACAATC--CGCGTCCGGCGAAGACGTCGTCACCATA---------CCATCTACT----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33136170 383 + 33334924 CTCAAGTTTGCCGGATTTA----TAAAGTAGTACAGAAGTGTCTCACGATCGTGGAGCggaaaaggggggggggcgC----TGGCGCCGAc-c-cgaaaaaagaa----ctgagACTGTAT-----TGGAAAAGTTTAATCACGTATTCCGCTCGTCTCGTCATTTATTTGAGCCTTCTCTCGGT----TCGCAtcgtttttggttttccgCCTCCCCTCCGCGTTTCC---------CTCGT---TTCCGAATTTGCCGCGACCTATCACAGGTCACGAACTTTAGTGCCCGCACGCCGCGTTTTGTATCTGCCTGCGCATCTCCACGCCGACTTACTAT------------TCTCCC--GATCCGCGC--GGAACTGCCACAAACAACAACAATC--CGCGTCCGGCGAAGACGTCGTCACCATA---------CCATTTACT----
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2946637 344 -  4147112 CTCAAGTTTGCCGGATCCA----CAAAGTAGTACAGAAGTGTCTCACGATCGAGGG-------------------GC----TGGCGCCggc-c-cgaaaaaaaaa----ctgagactGTAT-----GGGAAAAGTTTAATCACGTATTCCGCTCGACTCGTCATTTATTTGAGCCTTCACT-------------tcgtttttggttttccgCCTCCCC-------TTTC---------CTCGT---TTCCGAATTTGCCGCGACCT----CAGGTCACGAAGTTTAGTGGCCGCACGGAGCGTTTTGTATCTGCCTGCGCATCTACACGCTGGCTTACTAT------------TATTCC--GATCCGCGC--GGAACTGccacaaacaacaacaatc--cGCGTCCGGCGAAGACGTCGTCACCATA---------CCATCCACT----
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   103323 360 +   152553 TAAAAGTTTGAGGGATCCATTTGTAAAGTAGTATAGAAGTGTCTCACGA------G-------------------------CGGCGCCGAC-G-CGC--AAAAAA----GTGGAACTGTAT--GACGAAAAAAGTTTGATCACGTATTCCGCCCGACTCGTCATTTATTTGAGCCTTCTCGCGGTCGCCTCGTTTCGTTTTTGGTTTTCCGCCTCA---------GTCC---------TCCAT---CTCCGAATTTGCCGCGACCTATCACAGGTCACGAACTTTAGTGCCCGCACGCCGCGTTTTACATCTGCCTGCGCTTCTACACGCCGACGCACTAT------------TCTCGC--GATCCGCGCG-GAAACTGCCACAAACAACAACAGTC--CGCGTACGGTGAAGACGTCGT-ATCCTA---------CCCTCCATTTGTT
i caeJap4.Scaffold4951 I 35 I 292

a score=-3365.000000
s ce10.chrX             2210476 38 + 17718866 -GCATCCA---ACTCATCTCTTTCTTGTATTTAATTCCTTTT-----------------
s cb4.chrX             13684821 28 - 21540570 CTCGTTTCCAAACTCAAA---------------GTTTCCTATT----------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4435900 41 +  4500979 CACATCTT---ACTCACC---------------Gttcttttttgtgcttttttcatttt
i caeRem4.Crem_Contig0 C 0 I 73
s caeSp111.Scaffold629 33136553 23 + 33334924 CCATTTCT---ACTCACC----------------TTCCCTTT-----------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2946981 23 -  4147112 CTGATCCC---ACTCACT----------------TTCCTTAT-----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   103683 292 +   152553 I

a score=753.000000
s ce10.chrX             2210514 2 + 17718866 TC
s cb4.chrX             13684849 2 - 21540570 TC
i cb4.chrX             C 0 I 373
s caeSp111.Scaffold629 33136576 2 + 33334924 TC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947004 2 -  4147112 TT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   103683 292 +   152553 I
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=-1640.000000
s ce10.chrX             2210516 2 + 17718866 AC-------
s caeSp111.Scaffold629 33136578 2 + 33334924 CC-------
i caeSp111.Scaffold629 C 0 I 39
s caePb3.Scfld02_0      2947006 9 -  4147112 GGAGTTTTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=159.000000
s ce10.chrX             2210518 55 + 17718866 ACACCCACACACACACACACCACACCACAGGTTGCAAACCATTGTATAATTTTCT
s caePb3.Scfld02_0      2947015 31 -  4147112 -----------------------ACCctcggtttcgaaat-ttttataatGTTCT
i caePb3.Scfld02_0     C 0 I 44
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeSp111.Scaffold629 33136580 39 + 33334924 I
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=0.000000
s ce10.chrX             2210573 54 + 17718866 GAAAAGCACTGTAACCAATTAGAAAACGATTTTTCAAAAGTGGAGCAGTGCTAC
e caePb3.Scfld02_0      2947046 44 -  4147112 I
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeSp111.Scaffold629 33136580 39 + 33334924 I
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=462.000000
s ce10.chrX             2210627 17 + 17718866 ATATATGATACCAAAAT
s caeSp111.Scaffold629 33136619 17 + 33334924 GTCTAGGCTATCAAGAC
i caeSp111.Scaffold629 I 39 C 0
e caePb3.Scfld02_0      2947046 44 -  4147112 I
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=0.000000
s ce10.chrX             2210644 1 + 17718866 A
e caePb3.Scfld02_0      2947046 44 -  4147112 I
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeSp111.Scaffold629 33136636 0 + 33334924 C
e caeRem4.Crem_Contig0  4435941 73 +  4500979 I

a score=-14471.000000
s ce10.chrX             2210645 141 + 17718866 ATCAAATTTTGTATTAAAACTTTTAAAAA------GTCAAAAAAAATCGTTTGAAATGTTTTTTTTACTGACAGTCAA---AAAGTGGAAATTTTTAGAGTTTATGCCTCGAACAAAAACTGAGATTTTTCCAATTTCCAATTCCAGTTT-
s caeRem4.Crem_Contig0  4436014  92 +  4500979 CTTAACTTTTGT--------TCTTGGGAA-----TTCCA--------------TACAGTTTGTTATAAT-----TCTGTACGAATTAATAATTTT---------------ATACAT-----------CTTTTTGCTGTTTCCACCAGTTT-
i caeRem4.Crem_Contig0 I 73 C 0
s caeSp111.Scaffold629 33136636  90 + 33334924 -------TTTGA--------TCTTAAGAA-----TCTCGg-------tatttctgaatttcttcttatt-----tttg---taaACTCCAGTTTT---------------GAACGA-----------TATCTTATTTCTTgaattaatatt
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2947090  94 -  4147112 ------------------------aagaaggttttgtcag-----attttttttgcatttttttttggt-----ttta---ggaTCACAAAACTTT-----------CCCTGACGAA---------TTTTCCTTATGTTCACATCCATATT
i caePb3.Scfld02_0     I 44 I 24
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I

a score=-1609.000000
s ce10.chrX             2210786 25 + 17718866 GACACACATAGTGCAACTCCAATTG
s caeRem4.Crem_Contig0  4436106 25 +  4500979 TATTCATTTAATTATTCTAGAATAG
i caeRem4.Crem_Contig0 C 0 I 78
s caeSp111.Scaffold629 33136727 17 + 33334924 ----tatttcatccCCCATGA----
i caeSp111.Scaffold629 I 1 C 0
e caePb3.Scfld02_0      2947184 24 -  4147112 I
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I

a score=162.000000
s ce10.chrX             2210811 14 + 17718866 CTCATTATTTTATT
s caeSp111.Scaffold629 33136744 14 + 33334924 CATGTGTTCTTGTT
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0      2947184 24 -  4147112 I
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeRem4.Crem_Contig0  4436131 78 +  4500979 I

a score=-1284.000000
s ce10.chrX             2210825 94 + 17718866 AGTTTATTC--TTACAACCATCACC--CTTTTCCCAGATGTATTTCGTACCATGATGTGTGTATG-TGTGTGTGTTAAAAGGTCATTTCA---------AGCTCTTCG
s caeSp111.Scaffold629 33136758 84 + 33334924 -GGCTGTTCCCTTCCAA-TGTCTCTTTATTCCCCCAGATGTATTTTGTACT--------ATTACA-AGTCTA---AGAAAGAgcaatctc----------ttttttct
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947208 96 -  4147112 AATCTATCCTTTTATA-----------GTTTTCCCACATGTCTTTTGTATCAAGA-GTGATCATATAGTCCATATGAAAAGCGCACTTTTATAATGTACATCTTTCTC
i caePb3.Scfld02_0     I 24 C 0
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I
e caeRem4.Crem_Contig0  4436131 78 +  4500979 I

a score=1147.000000
s ce10.chrX             2210919  88 + 17718866 TGAAAGGCACCCTGCT--CAGTTTGTGCCCTGTTATGA--TCAATATAA------ATG---TGTACTTT-------------ATTCCA-------GGGCAACGAAA---CGAGTAAA-CACCGAG
s caeRem4.Crem_Contig0  4436209 106 +  4500979 TGAATGGCACCGGCCc--cttcttgtgcacttttc-----tcgTTTTATGT----ATT---TGTACTTTCCCAACCCTA---TTTTTCTTTACAGAAACGA-Gaaagagaaatcaaa-aaccGAA
i caeRem4.Crem_Contig0 I 78 C 0
s caeSp111.Scaffold629 33136842 112 + 33334924 tgaatggCACGGTCAC--CAGCTTGTGCACTCTGCTTCAATCGTTTCTTTGCTCAGTTCCGTGTACTATTTTAAAGTTCATATTTCTA-------GAACAC-GAAC---CGATCCGATCGTATAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947304 106 -  4147112 TGAATGGCACTGTCTCCACAGCTTGTGCTCTCTCCATC--TCATTTTAT------ATT---TGTACTTTCCTAAAATCT---TTTCTATTTTAGTGAACGA-GAAA---CGATACGA-AATTCAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   103683 292 +   152553 I
e cb4.chrX             13684851 373 - 21540570 I

a score=-12130.000000
s ce10.chrX             2211007 35 + 17718866 AAA--AGGAAGCATT-CTGGATATTC------------CAAACTGGGGCT
s caeRem4.Crem_Contig0  4436315 31 +  4500979 AC-----------------GATATTGA--ATCCTACGCCAAATTTGACTT
i caeRem4.Crem_Contig0 C 0 I 8
s caeSp111.Scaffold629 33136954 17 + 33334924 AA-----------------GATATTC----------------TTCGAATC
i caeSp111.Scaffold629 C 0 I 5
s caePb3.Scfld02_0      2947410 15 -  4147112 AC-----------------GACATTC------------------AAAATT
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold4951   103975 48 +   152553 --AAAAGAGAACATTGTTGGACACCTGCCAGTCTGGTACATAACGCAGTT
i caeJap4.Scaffold4951 I 292 C 0
e cb4.chrX             13684851 373 - 21540570 I

a score=54305.000000
s ce10.chrX             2211042 76 + 17718866 GATGATGACAACAACAGTTCAAAA------AAATTGCTGGCGGCTTGACCAGGTGAGTGACCAGTTAGA-------------TTTGTTCAGCGAC
s cb4.chrX             13685224 80 - 21540570 GATGATGACCACGACTGAAAAAGATC---CAAACTGCTGGCGACTCGAACAGGTGAGTG-------TGACCGCCACCCAAAGTTTGTTCA-----
i cb4.chrX             I 373 C 0
s caeRem4.Crem_Contig0  4436354 92 +  4500979 TATGATGACCACGACTGAAAAGAATT---CGAACTGTTGGCGACTTGAACAGGTGAGTGACCAGTTAGATAACCGCTGTAAGTTTGTTCAGCCAT
i caeRem4.Crem_Contig0 I 8 C 0
s caeSp111.Scaffold629 33136976 86 + 33334924 AATGATGACAACAACTGACAAGAATG---CAAATTGTTGGCGACTTGGCCAGGTGAGTGACCAGTTAGA------CCCAAAGTTTGTTCAGCTCC
i caeSp111.Scaffold629 I 5 C 0
s caePb3.Scfld02_0      2947430 86 -  4147112 TATGATGACAACGACTGAAAAGGATC---CAAACTGTTGGCGACTTGAACAGGTGAGTGACCAGTTAAA------CTCAAAGTTTGTTCAGCCCT
i caePb3.Scfld02_0     I 5 C 0
s caeJap4.Scaffold4951   104023 84 +   152553 CAAAATGACATCAACCCAAAAGAATCCAGCAAACTGCTGGCGCCTCGAACAGGTGAGTGACCACTGGAA-----------AGTTTGTTCAGTGAC
i caeJap4.Scaffold4951 C 0 I 504

a score=5016.000000
s ce10.chrX             2211118 12 + 17718866 A------------GGCGTTTTCAG
s cb4.chrX             13685304 10 - 21540570 -------------Ggc-ttttcag
i cb4.chrX             C 0 I 17
s caeRem4.Crem_Contig0  4436446 22 +  4500979 GTACATGACCAT-GGC-TTTTCag
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold629 33137062 22 + 33334924 ATCAGTGGACAT-GGC-TTTTCAG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947516 23 -  4147112 ATACATGGTCATGGGC-TTTTCAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I

a score=857.000000
s ce10.chrX             2211130  9 + 17718866 TCGGTGG----------TT
s caeRem4.Crem_Contig0  4436470 14 +  4500979 tgagtga-----aaaattt
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold629 33137084 19 + 33334924 CCAGTGACGAGAACAATTT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947539 19 -  4147112 CCAGTgatgaatgaaattt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685314 17 - 21540570 I

a score=16556.000000
s ce10.chrX             2211139 28 + 17718866 TGAGTTTGCACAACTGTTTTCTTGTCCT
s cb4.chrX             13685331 28 - 21540570 TGAGTTTGTACAACTGTTTTCTATTTCT
i cb4.chrX             I 17 I 920
s caeRem4.Crem_Contig0  4436484 28 +  4500979 tgagtttgcaCAACTGTTTTCTCGTCTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33137103 27 + 33334924 T-AGTTTACACATCTGTTTTCTCCACCC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2947558 28 -  4147112 tgagtttgcaCAACTGTTTTCTCCGCCC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I

a score=137.000000
s ce10.chrX             2211167 27 + 17718866 TTGCGTGAGCCAA-GGGGTTTGTGCTGA
s caeRem4.Crem_Contig0  4436512 19 +  4500979 ---------TCAGCGGTTTTGTGACTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33137130 17 + 33334924 ---------TTAA-GGTTT-AGAACTGA
i caeSp111.Scaffold629 C 0 I 26
s caePb3.Scfld02_0      2947586 18 -  4147112 ---------TCTA-GGTTTCACGACTGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I

a score=-2256.000000
s ce10.chrX             2211194 34 + 17718866 GTTACCCTC--TATCTATTTGTCAGAATACGATGTG----
s caeRem4.Crem_Contig0  4436531 35 +  4500979 -CTGACCTCGCTGCTTATTTGtgagaa----atattcaga
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2947604 24 -  4147112 -----CCTCATCTATTA----TGAGAA----ACGGGC---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I
e caeSp111.Scaffold629 33137147 26 + 33334924 I

a score=-702.000000
s ce10.chrX             2211228 149 + 17718866 ATGATCAAAACTTTAACATCATGCATTTTCTTGAGATCCATAAACCCCCCCCCCCCCCCCTCTCGTGT---GCTTCTCTGTTTCTCGGTTTGTTCTCCTATTCACCCCGTTCGTTT---CAGTGACGTGTCGTCGTTTGTTTCTGCCTGCCAAAT---------
s caeRem4.Crem_Contig0  4436566 125 +  4500979 atgaTCAGAATTTTCACACCATACCTCCGATTTGAATGCCTA-------------------------TCTGATTCTTattccactattttttctctcgatttta--cacTTGGTTCCTGCCATCGCGTTTAGATAAATTTTCCG---TAcgaaat---------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33137173 112 + 33334924 ATAATCAGAACTCTCACATCATTCATTCTCGTGGGAGCCACC-------------------------T---ACTACTCTTTTACTATACTCATTCT------------CATTGTTC---TCTTGACGTGTGGgtaaatgttt---------ttgttcattGAAT
i caeSp111.Scaffold629 I 26 I 25
s caePb3.Scfld02_0      2947628 102 -  4147112 ATAATCAGAATTCTCACATCATATCTTCTCTCGGGATGTTCC-----------------------------GCTCCCCCTTAATTATGTTTATGCC------------ATTCGTTT---TAATGACGAGTCAACACTGATTC---------ATAT---------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I

a score=1160.000000
s ce10.chrX             2211377 28 + 17718866 ATGGCTACGGGGGGGAATATGAATTAAA
s caeRem4.Crem_Contig0  4436691 26 +  4500979 --aattttattatgGAATATTAATTGAC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2947730 21 -  4147112 -------AGGTGTAGAATATCAATTGAA
i caePb3.Scfld02_0     C 0 I 27
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I
e caeSp111.Scaffold629 33137285 25 + 33334924 I

a score=-31800.000000
s ce10.chrX             2211405 241 + 17718866 ------TTGACTTG------GTATCTA-------------------TCATTCCATTTTTATTTTCT----------------------------GGGAG---------ATGTCAAGAAATTTTGGAGACGAGCGGTTTTTAAAATTAA------------------------------------TGTAGTTTTTTTTGTTGTGT-------TCTCACAT-----TTTAGTTTTCTAATCGGG-GAAATG-------TTGGAGTAAATTGTAA--TTGATAGGTACACATT-TACTTATCAATGGTTCACAGTTTCAGTTAATTATCAGTATTCATATGCGTTTTTATCTTT--TGTATAATTTTAACATT------
s caeRem4.Crem_Contig0  4436717 296 +  4500979 GTGACTCTATTTTC-------CATCTA-------------------TCA-TTGTCTTCTTTTGCTA-----------------------------GTAGTGTAGTTCAAGAACGAAAGTTGGAGGAACCCAGAAATTGATGGCATCGGGCACCCTTCTTTTTTATATACgaattgt--------tcagttttttcttaatGTACGAttcttctttgaattttcattgaattttccaCTCTCCAGCAGAGGTAATCTTTCTAGTGAAGTTTATAATTGATGGGTATGCCCTCTACTTATCA---GGTCTTCCATTTAATT--TTATCAGTCtct-----ttccattattttttcaatgtcacCTTAACATT------
i caeRem4.Crem_Contig0 C 0 I 42
s caeSp111.Scaffold629 33137310 208 + 33334924 ------TTATTTTG-------TGTTTAG------------------GCATTTATTCTCTGTTTCTA----------------------------GAT-GTGt------agaataatattttctcgTATTTCTAGATTAATggc-----------------------------------------tctctttttgttttcagtaa-------CTGAAAATATCGACATGGTTCTAGAACCCTT-GTAGag-------tttga-aacagtaaaagtttgaaaaatct------ta-------------ttCAAAAGTAAtt--tcatcatacttt-----cctttctacttct---------------ttttc----t
i caeSp111.Scaffold629 I 25 C 0
s caePb3.Scfld02_0      2947778 303 -  4147112 ------CTATCTTGAACTAAATAttcggaaatggaaaaaaaaggatgcaTTTTTCTCGtatttctatctctctcttgCTGAACTGTCTTCTGTTGATAGTTT------Atggcaaaattttttaaaagttatcaatttgaaacattg-----------------tACACAACCAgtgcattttatttttttttttttactctaa-------TCCTGAAttatcattttccttttctgtcTAT-CTGAAC-------TTCGATTAAACTCAAATTCTGGTGGTTAT------TAAT--------ATTCTCAAATTAGACA--TTGTACTGATTT-----GGTTTTTAACTTT--------GCCgtaatttttgaagt
i caePb3.Scfld02_0     I 27 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I

a score=-2227.000000
s ce10.chrX             2211646 43 + 17718866 CTACATTTTGCAACCAAAAAGCTCTCTATGTTTCTCCTT-------------------TACG
s caeSp111.Scaffold629 33137518 48 + 33334924 ct----ttc----------agttctttattttctaatttgaGAATGTAGAAGCAACCTTAAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2948081 42 -  4147112 cta---CTC----------AGCTCTTTCCATTCATATTCCGGATTGCATTA-------CAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e cb4.chrX             13685359 920 - 21540570 I
e caeRem4.Crem_Contig0  4437013 42 +  4500979 I

a score=-1418.000000
s ce10.chrX             2211689 7 + 17718866 -GGCGGAA-
s cb4.chrX             13686279 7 - 21540570 -GGCAAAT-
i cb4.chrX             I 920 C 0
s caeSp111.Scaffold629 33137566 9 + 33334924 CGGTGAGTA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2948123 9 -  4147112 GACTGAAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I
e caeRem4.Crem_Contig0  4437013 42 +  4500979 I

a score=1476.000000
s ce10.chrX             2211696 2 + 17718866 AG
s cb4.chrX             13686286 2 - 21540570 GG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4437055 2 +  4500979 GG
i caeRem4.Crem_Contig0 I 42 C 0
s caeSp111.Scaffold629 33137575 2 + 33334924 GG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2948132 2 -  4147112 GG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   104107 504 +   152553 I

a score=553082.000000
s ce10.chrX             2211698 1298 + 17718866  
s cb4.chrX             13686288 1408 - 21540570  
i cb4.chrX             C 0 I 8
s caeRem4.Crem_Contig0  4437057 1351 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 55
s caeSp111.Scaffold629 33137577 1340 + 33334924  
i caeSp111.Scaffold629 C 0 I 4
s caePb3.Scfld02_0      2948134 1231 -  4147112  
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold4951   104611 1304 +   152553  
i caeJap4.Scaffold4951 I 504 C 0

a score=-14863.000000
s ce10.chrX             2212996  80 + 17718866 ---------------AAGACT-TCTTCGA------------GAATgggggggggggggggg--------------ggggCGCGACGTGAAAATGAAG-GGCATTCATGGATCCCGTAGTAAAT
s cb4.chrX             13687704  53 - 21540570 ---------------ACAAAT-TAGGCAa---------atggaa---------------agtttttttt----tcgggattgGTCCTGGACCTGAAC--------------------------
i cb4.chrX             I 8 C 0
s caeSp111.Scaffold629 33138921  67 + 33334924 ---------------CCACCTAAAGTCGA------------GAA---------------AGAAGTTTGG----CAAGCTTTGGACCTGAATGAAAAG-GGAA---------TTCATAGTAAAC
i caeSp111.Scaffold629 I 4 C 0
s caePb3.Scfld02_0      2949369  89 -  4147112 ---------------ccACCT-AAGTCGA------------GAACAAtgtggaagaaagagaagttCGG----CAAGCTTGAAGCCTGGATTGACGC-GGCAGGAA-GTGTTCCGTAATAAAC
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951   105915 122 +   152553 TCTTCCTCCGCTGTCTCGCAT-TATTCCATGTCGGGAAAATGAAGGAGAGAGGAGAAAGAAAAGTTTCGGCAAGAAGCTTTTGACCTGGATCAGTAGCGGCAGGCAAGCCATCCGCAGTAAAC
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4438408  55 +  4500979 I

a score=983275.000000
s ce10.chrX             2213076 2127 + 17718866  
s cb4.chrX             13687757 2315 - 21540570  
i cb4.chrX             C 0 I 219
s caeRem4.Crem_Contig0  4438463 2150 +  4500979  
i caeRem4.Crem_Contig0 I 55 C 0
s caeSp111.Scaffold629 33138988 2197 + 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2949458 2164 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   106037 2234 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=967217.000000
s ce10.chrX             2215203 1253 + 17718866  
s cb4.chrX             13690291 1375 - 21540570  
i cb4.chrX             I 219 I 71
s caeRem4.Crem_Contig0  4440613 1277 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 5
s caeSp111.Scaffold629 33141185 1236 + 33334924  
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2951622 1220 -  4147112  
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951   108271 1239 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-7608.000000
s ce10.chrX             2216456 35 + 17718866 CCTCTAGCTTTTGA---GAGT-------GTCTAAGGGAATTGTGT
s caeRem4.Crem_Contig0  4441895 32 +  4500979 -CTTTAAACCC--AGGCGTGT-------ATCCAAGAGA-TCAT--
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold629 33142422 20 + 33334924 CTTCT--------A---TTGT-------GCCCAAGAGA-------
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2952843 39 -  4147112 CTTCTAAACCC--A---TTGTTAAGAGAATCCAAGAGA-TCATGT
i caePb3.Scfld02_0     I 1 I 37
s caeJap4.Scaffold4951   109510 15 +   152553 ------------------------------CCTAGCGAATTGTGC
i caeJap4.Scaffold4951 C 0 I 20
e cb4.chrX             13691666 71 - 21540570 I

a score=-2606.000000
s ce10.chrX             2216491 26 + 17718866 GTACGTG--------CAAAAAAG-----ATAACTTTTTT
s caeRem4.Crem_Contig0  4441927 31 +  4500979 GTACGTG--------CGGGAACATGGCAGTAATCCACTT
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold629 33142442 27 + 33334924 TCATGTA--------AAGTGAAA-GGCAATAATCCA---
i caeSp111.Scaffold629 C 0 I 5
s caeJap4.Scaffold4951   109545 23 +   152553 GTACGTGGGGATCGttagaaaaa----------------
i caeJap4.Scaffold4951 I 20 C 0
e caePb3.Scfld02_0      2952882 37 -  4147112 I
e cb4.chrX             13691666 71 - 21540570 I

a score=205.000000
s ce10.chrX             2216517 1 + 17718866 T
s caeRem4.Crem_Contig0  4441960 1 +  4500979 C
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold629 33142474 1 + 33334924 C
i caeSp111.Scaffold629 I 5 C 0
s caePb3.Scfld02_0      2952919 1 -  4147112 C
i caePb3.Scfld02_0     I 37 C 0
s caeJap4.Scaffold4951   109568 1 +   152553 t
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13691666 71 - 21540570 I

a score=114941.000000
s ce10.chrX             2216518 245 + 17718866 TATTTCGTAACCCTTAAAAATTCACTTCATGGCACCAGTA-----GAT-GGA-----------AAAAAAAGATCGTCGG-CCCTTTTCGAGTGTGT---CAAAAATAGTTTGTGT--ATACAAGTTAAAAGTGCAACGAGATG---CGCTACT----TTCGGCGC---TGGGTGGCGCCGCC-GAGTGCC--TAGGTCAGTTGCG--ATGTTGGTCAGGTCAAATAAAACAATCT-GAGCGTGGCACGGT----TCGAAACATCGGCCAC-TCATGC------G---CGTGCCGCAAT
s cb4.chrX             13691737 273 - 21540570 TCTTTCGTAACCTTTGAATG-TCACTTCATGGCGCCCGAT-----CGG-GAG-----------AGAGGAATACGATCAG-CCCTTTTCAAGTACTT--TTCGAAACTGTCTATGTACATACAAGTTAAAAGGGCAATCGAATGCGCGGCGATTCCGATTCGGAGCGG-AGGATGGTAGCGCCAGGGTGTCCGTGGGTCAGTTGCGAAAACTTGGTCAGGtcaaataaaacaatttcgcGCGTGGCACGGCGGCGGCAAAACTTTTGGCCTTCCCGTCCCAGGTG---TGTGTCGCAAT
i cb4.chrX             I 71 I 19
s caeRem4.Crem_Contig0  4441961 257 +  4500979 TCTTTCGTAATCTTTGAATG-TCACTTCATGGCACCAGAC-----AGG-GTAG------TT--AAAAGAAGATCGCCAG-CCCTTTTCAAGAGCGTAGCACGTAATAGTTTGTGTGTATACAAGTCAAAAGTGCAATTGGATGCGCAAAAGTT----TTCGGCGC---CGGGTGGTGGCGCC-GGGTGCC--TAGGTCAGTTGCG--AACTTGGTCAGgtcaaataaaacaattt-gagCGTGGCACGGt----tcgaaacatttcattcGCCCGCC-----TG---TGTGTCGCAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33142475 255 + 33334924 TCTTTCGTAACCTTTTAATG-TCACATCATGGCACCAGAC-----AAagatta------tttcaaaaaaaggtcgCCATCCCTTTTTCGAGTGTCTAC---TAAACAGTTTGTGT--ATATAACTCTAAAGTACAATAGGATG--CAACTACT----CTCGGCGT---TGGGTGGCGGCGCC-CGGTGCC--TAGGTCAGTTGCA--AACTGAGTCGGGTCAAATAAAACAATCT-GAGCG-GGCACGGT----TCGAAACATTGCCCCTGCCGGGC------GCGTCGTTTCGCAAT
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2952920 246 -  4147112 TCTTTCGTAACTTTTGAATG-TCACTTCATGGCACTAGA----------GTAG------TTCGAGGAAAAGATCGTAAG-CCTTTTTCGTGAGtctatacaaaaaaagtttgtgt--aTACAAGTTAATAGTGCAGTAGGATG---AGCGATT----TTCGGCGC---TGGGTGGCCGTGCC-CGGCGCC--TAGGTCAGTTTCA--AA--GTGTTAGGTCAAATAAAACAATCT-AAGCGTGGCAAGTT----TCGAAACATAGTCCTT-CCATGC------G---CGTGTCGCAGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   109569 255 +   152553 tgtttcgCAACCT--------TCACTTCATGGCACTAGGCCCGTTCGG-GCAGGCAACATTTTCGGAAAAGATCGTTCG-TCCTTTCGAAATGCGA---ACCAAACGGTTTATGT--GTACAAGTTAAAAGTACATGAGTATA--CAGCCAG-----CGCGGCGCAACAAGGTGGCGGTGCC-CGGCGCC--TAGGTCAGTTGCA--AAGTTGGTCGCGACAAACCAACCAATTT-GCGCATGGCACGGT----TCGAAACATCGACCT--CCCGCC------G---CGTGTCCTGAT
i caeJap4.Scaffold4951 C 0 C 0

a score=-4931.000000
s ce10.chrX             2216763 28 + 17718866 TTTGCCCCCCTCCTCCCTCCCATGTTGA
s caeRem4.Crem_Contig0  4442218  8 +  4500979 --------------CCTTCCAA------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33142730 11 + 33334924 -----------------TCCGAAATTCT
i caeSp111.Scaffold629 C 0 I 1
s caePb3.Scfld02_0      2953166 11 -  4147112 -----------------CCCAAACTCCA
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold4951   109824  9 +   152553 -------------CCTTTCCGA------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13692010 19 - 21540570 I

a score=1154560.000000
s ce10.chrX             2216791 2189 + 17718866  
s cb4.chrX             13692029 2245 - 21540570  
i cb4.chrX             I 19 C 0
s caeRem4.Crem_Contig0  4442226 2135 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 44
s caeSp111.Scaffold629 33142742 2168 + 33334924  
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0      2953178 2137 -  4147112  
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951   109833 2161 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-13405.000000
s ce10.chrX             2218980 49 + 17718866 AGCCATTTTTAAACGCCAATTCGCGGCGCGCACGGC---CCTGCAAAAACTG
s cb4.chrX             13694274 35 - 21540570 ------TGT-----CTTTTTTGGGTAGACTAGCAA------TACACAAACCG
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629 33144910 35 + 33334924 aa---attt-----cctttttgtcGGCACGAa---------tccaagaagaa
i caeSp111.Scaffold629 C 0 I 3
s caePb3.Scfld02_0      2955315 47 -  4147112 AATGTATTTGAAAGACATTCTAGCGCCACAGACGT-----CTCCAGgaagaa
i caePb3.Scfld02_0     C 0 I 13
s caeJap4.Scaffold4951   111994 40 +   152553 ------------agtgaaaagagagtgacaaaaggcaaaaccacaaaaaaac
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4444361 44 +  4500979 I

a score=126254.000000
s ce10.chrX             2219029 218 + 17718866 AAC---ACACGGAAACCGATGAAAAAGTGTGGTGTCGTCGAGGTTTGACCCAGTTTACACCGAATGCGATAGCCGAAAAAGCGCTTTTTCAGTATAG-----------ATTGGCCGTGCCATTTT-CATTGGG----ACAGTATAATAGTTGATCTGGCGC-----AAGACACTGACAGTCGCCGCC----ATCCACTTTCACTATTTTC-AAAATATGGGACACGGAAAGTGAAGTAGTGGGCGAC
s cb4.chrX             13694309 212 - 21540570 ------ATTCGAAAACCGATGAAAAACCAT-----GG--------TGACCCAGTTTAGACTAAATGCAATGGCCAG---GAAGCT-TTTCAG--ATGGCGAACAACGAGAGACCAGTGCCATTTTTCACGTCGCTGACGCCTATTAAAGT---TTTGGGGCACGAGAAGGCACTGACCGTCG-CGCcgaaaattcacttttattc------AAAATATGGGACACGGAAAGTGAAGTGGTTGATGAC
i cb4.chrX             C 0 I 1497
s caeRem4.Crem_Contig0  4444405 206 +  4500979 aac---agtcggaaatcgatgaaaaagcAT-----AGACGAGGTTTGACCCAGTTTTAACCGAATGCGATAGC------AACGCT-TTTCAG--CTG-----------GATGGCTGTGCCATTACAATCGGCG----AAACTATTATAGTAGATCTGGCGC-----AAGACACTGACAGTCGCCGCC----ATTCcctttcgatttttcaaaaaatatgggaCACGGAAAGTGAAGTGGTAGACGAC
i caeRem4.Crem_Contig0 I 44 C 0
s caeSp111.Scaffold629 33144948 213 + 33334924 cac---atgcggaaactgatgaaaaagCATAGTGAAGTCGAGGGTTGACCCAGTTTACACCGATTGCGATAGCCAG--AAGCACC-TTCTAG--CAG-----------ATTGACCGTGCCATTTCAAACCGCG----ACACTATTATAGTTGATCTGGCGC-----AAGACACTGACTGTCGCCGCC----ATTTACTTTcactattttg-aaaa-atggagcGCCGAAAGTGAAGTGGTGGGCGAT
i caeSp111.Scaffold629 I 3 C 0
s caePb3.Scfld02_0      2955375 209 -  4147112 aac---actCGGAAACCGATGAAAAAGCAT-----AGTCGAGGTTTGACCCAGTTTACACCAAATGCGATAGCCAA--CAGCGCCATTTCAG--CAG-----------ATTGACTGTGCCATTTC-CATAGGG----ACACTATTATAGTTGATCTGGCGC-----AAGACACTGACAGTCGCCGAC----ACTTACTTTCACTACTCCC-AAAATATGGGGCGCGGAAAGTGAAGTAGTAGGTGTC
i caePb3.Scfld02_0     I 13 C 0
s caeJap4.Scaffold4951   112034 208 +   152553 aacgttaTTCGGAAACCGATGAAAAAGCGC-----TGAGAAGAAATGACCTAGTTTACAACGCATGCGATAGCCAG--AAGCGCT-TTTCAG-ATTG-----------GCCGCTCGTGCCATTTC--ATCGGG----AACCTATTAGAGTCGATCTGGCGC-----AAGACACTAACTGTCGCCACC----ATTCACTTTCACTATC----GGAATATGGGACATGGAAAGTAGAGTAGTGCGCTAC
i caeJap4.Scaffold4951 C 0 C 0

a score=-908.000000
s ce10.chrX             2219247 40 + 17718866 AAACATCAAGACAC--TCT--CGTAAATGCGAACGAAAAAAAAA
s caeRem4.Crem_Contig0  4444611 30 +  4500979 AGACGTCGAGACAC--GCA--CTCA----CGAATAAAA------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33145161 34 + 33334924 TGGAATGAAAACAC--TCA--CGCA----CAACTataaaaaa--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2955584 40 -  4147112 AGGCATCACAGCACGTTCGTTcgta----caaacaaaaaacaaa
i caePb3.Scfld02_0     C 0 I 1324
s caeJap4.Scaffold4951   112242 33 +   152553 --ACAGACAGCCat--tca--aata----aaaagaaaaaaaaa-
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13694521 1497 - 21540570 I

a score=-417.000000
s ce10.chrX             2219287 11 + 17718866 CACCCACACTC
s caeRem4.Crem_Contig0  4444641 10 +  4500979 -ACCCACACTC
i caeRem4.Crem_Contig0 C 0 I 11
s caeSp111.Scaffold629 33145195 11 + 33334924 cacaaatattT
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951   112275  6 +   152553 ---caacaa--
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e cb4.chrX             13694521 1497 - 21540570 I

a score=-2187.000000
s ce10.chrX             2219298 14 + 17718866 ACTCACACAAAACC
s caeSp111.Scaffold629 33145206  2 + 33334924 G------------G
i caeSp111.Scaffold629 C 0 C 0
s caeJap4.Scaffold4951   112281  8 +   152553 attcgCAT------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeRem4.Crem_Contig0  4444651 11 +  4500979 I

a score=113.000000
s ce10.chrX             2219312 29 + 17718866 GCGTAGGTTA-----CT--TGGTTGTGAA--TTGAAAA
s caeRem4.Crem_Contig0  4444662 31 +  4500979 GCGCAGGTTA-----CT--GCATTATGAACGATGACAA
i caeRem4.Crem_Contig0 I 11 C 0
s caeSp111.Scaffold629 33145208 33 + 33334924 GCGTGGGTTA-----CTCGAAAGGatgagatttgaaaa
i caeSp111.Scaffold629 C 0 I 953
s caeJap4.Scaffold4951   112289 28 +   152553 -CGCAGGTTAGACTGTT--TCGTTCTAAACG-------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e cb4.chrX             13694521 1497 - 21540570 I

a score=560.000000
s ce10.chrX             2219341 9 + 17718866 ATGATATCT
s caeRem4.Crem_Contig0  4444693 9 +  4500979 TCCCTATCT
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951   112317 9 +   152553 ACGAAATCT
i caeJap4.Scaffold4951 C 0 I 2615
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241 953 + 33334924 I

a score=431.000000
s ce10.chrX             2219350 10 + 17718866 TAGATCTAAA
s caeRem4.Crem_Contig0  4444702 10 +  4500979 TGGATTcgaa
i caeRem4.Crem_Contig0 C 0 I 620
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241 953 + 33334924 I

a score=0.000000
s ce10.chrX             2219360 1531 + 17718866  
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241  953 + 33334924 I
e caeRem4.Crem_Contig0  4444712  620 +  4500979 I

a score=10400.000000
s ce10.chrX             2220891 386 + 17718866 GCTGAGTGCCAGCTGTTAACTGACCCTTCTCTT-------TGAAACTAGAGAAGCTTTTTCCGAAAAAATTGCCAAACGTTTCTTTTCTTTCGTTTTTTTTTCTCTCTCCGAACCTCATAATACTGCTTTTGTTAAACAATGATGATCAAATGTTCAATAAGAATTGACACAAAAGAAGATTAGCAAATTGACAGAGGGTTTTAAACTTTTTAT-TGGATTGATGGTAGGAACAATCTTGAAAAAATAATGGAGAAAAAGAGAAAAGGCTCGCAACAGTTGAAAGAACAAGTAGGACACGTTT----GGAAGTTTTACGCTTACAATCAAACCACAAA-ACC--CCTTATCACACTCGACTTTTTCCGAACAATGCGGTGAGTTTTATGTGTAACTATTGT
s caeRem4.Crem_Contig0  4445332 355 +  4500979 GCTGAGTGCCAGCTGTTC-TTGACCCTTCTATTAGAAACATGAGACGAAAAAAGCTCACTGAAAGAAAGTTGCGAAAAGTTCcat-------gttttctcatttctttttgaaa-----aacaccgATTTTGC---ATCACTTTGATCAAATGtacaagaagaagagagaaaggaaaagatTAAGAAAGTAGTTGGGggttttaaactttttttatgGTTTGATGGTCGATACGGGGTC-------------AGACTACAAGAAAAAACTCGCAACAGTTGCGAGAACAACTAGGGCAAGTTTTCGAGATAATTTCA---TTGCAACCAAATCACAGATACCAACCTTATCACAC------TTTTCCGAACAATG--------TTAATGGATTGTTATTGT
i caeRem4.Crem_Contig0 I 620 I 106
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241 953 + 33334924 I

a score=0.000000
s ce10.chrX             2221277 1341 + 17718866  
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241  953 + 33334924 I
e caeRem4.Crem_Contig0  4445687  106 +  4500979 I

a score=830.000000
s ce10.chrX             2222618 15 + 17718866 CCAATGCTATTGTCA
s caeRem4.Crem_Contig0  4445793 15 +  4500979 CCAAGACTATTGTTG
i caeRem4.Crem_Contig0 I 106 C 0
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I
e caeSp111.Scaffold629 33145241 953 + 33334924 I

a score=58.000000
s ce10.chrX             2222633 2 + 17718866 AA
s caeRem4.Crem_Contig0  4445808 2 +  4500979 GG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146194 2 + 33334924 aa
i caeSp111.Scaffold629 I 953 C 0
e caePb3.Scfld02_0      2955624 1324 -  4147112 I
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I

a score=753.000000
s ce10.chrX             2222635 2 + 17718866 GA
s caeRem4.Crem_Contig0  4445810 2 +  4500979 AA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146196 2 + 33334924 ga
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2956948 2 -  4147112 GA
i caePb3.Scfld02_0     I 1324 C 0
e caeJap4.Scaffold4951   112326 2615 +   152553 I
e cb4.chrX             13694521 1497 - 21540570 I

a score=-270.000000
s ce10.chrX             2222637 1 + 17718866 ---A
s cb4.chrX             13696018 4 - 21540570 AAAC
i cb4.chrX             I 1497 C 0
s caeRem4.Crem_Contig0  4445812 1 +  4500979 ---A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146198 1 + 33334924 ---a
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2956950 1 -  4147112 ---A
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   112326 2615 +   152553 I

a score=46279.000000
s ce10.chrX             2222638 245 + 17718866 AACAACATCTCGATGTTTGCACATTTTTGAA----AAGGGTCATGTCAAAAT--CCCAAGAGAGAGCTTTGCTATTTTCTCGGCTCGGCCGATTCGATCCACTTGTG-TT-TTTTCTCCATTCTCCCGGCTTA--GTGTTCCAAGCGACGAGCTCACTCGTTTCAAATGC---ATCTTAAATGAAGCTCACTATTTTAATTGTGAAA-----CT---GTTGTTGGGATGTAAACTAAACTTTTGTTGATTTTTAACTTTTGAATTT
s cb4.chrX             13696022 175 - 21540570 AACAAT--CTCGATGTTTgcaca-ttttgagaaaaaagggtCATGTCAAAATCCCCCC--AGAGACCTT-----TTCT-------CCGCCGTTTCAATCTACTTGCG-TTATTTTTTCG-TTCTGT---TTAG--CTGCTCCGAG--ACAAACTAA------GGAATAGAGTGTTCTGaacg----------attttta----gaaa-----------acgtTTA-----TCAAT-----------------------------TT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4445813 197 +  4500979 AACAAC--CTCGATGTTTGCACA-TTTTGAG----AAGGGTCATGTCAAAAT--CCCA--AGAGAGCTTAGCCATTCTCCCGG--CCGCCGATTCAATCcacttgtg-tt-ttttctcc-ttctcc---ccTC--GTGTTCCAAA----GAGCAAA------GAAAATGTTGGGTCTTATGT----------ATTTTCT----GTAATATTTGT---GATGTTTGGATGTTCAATC---------------------GAGTGAATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146199 203 + 33334924 aacaac--atcAATGTTTGCACA-TTTTGAG----AAGGGTCATGTCAAAAT--CCCA--AGAGAGCTTAGCCATTCTCCCGGCCCCGCCGATTCAATCCActtgtg-tt-ttttcttc-ttcact---ccCA--GTGTTCCAAA----GAGCGAA------GAAATGGT---CTCTCAAACG--------TATTTTCG----ACAA-GTTTCT---GATGTTTAGATCTCTCAGAAAC---------------ACTTTTCAAACC
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2956951 188 -  4147112 AACAAC--CTCGATGTTTGCACA-TTTTGAG----AAGGGTCATGTCAAAAT--CCCA--AGAGAGCTTAGCCATTCTCCCGG-CCCGCCGATTCAGTCcacttgtgttt-ttttcttc-ttctct---cccacCGTGTTCCAAA----GAGCAAA------GAAATGGt---ctttcaaac----------attttc--------------ct---gATGTTTAGATCTACAAAG---------------------TCGCAAATC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   114941 171 +   152553 AAAAACGGGCCGATGTTTGCACA-TTTTAGA--GGAAGGGTCAAGTCAAATT--CCCC--AGAGAGCTCAGCCATTT----GG--CCACCGATCCTATCCACTCGCG----TTTTCAAC-TGTTCt---taaa---------aga----aaacaaa------gacaA------GTGTCATTT----------GTTCCTA----ACAT-----CTGTGGAttttaagttttgttttt------------------------------
i caeJap4.Scaffold4951 I 2615 I 28

a score=-4643.000000
s ce10.chrX             2222883 32 + 17718866 CATTCAGTAAACTCGATCTCTAAAAACTCTGA
s cb4.chrX             13696197 16 - 21540570 AGTTAAATGACTTTCT----------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4446010 21 +  4500979 AGTTTGGTGACCTCccttctt-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146402 16 + 33334924 TACTCGATGGTCAAtt----------------
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      2957139 12 -  4147112 AGTTCTGTGACC--------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   115112 28 +   152553 I

a score=73583.000000
s ce10.chrX             2222915 617 + 17718866  
s cb4.chrX             13696213 530 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4446031 605 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 33146418 589 + 33334924  
i caeSp111.Scaffold629 C 0 N 0
s caePb3.Scfld02_0      2957151 602 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   115140 610 +   152553  
i caeJap4.Scaffold4951 I 28 C 0

a score=181646.000000
s ce10.chrX             2223532 223 + 17718866 TGGTTCTACGGCAGAGACGACCCGGACCGTTGGAGCGTAGGAGGGGTATGATAAGTTTTAATCATAACATTGCC--AGTTGTT-------TATTGCAGGTCTGGCCACTCCCGAAAAAAATTGTCTATGGGTCTAAGAATCGAACAATCACTTATGATAAAATCGGAATTGATCTTGGCGACAAAAAAGATTGCGATATTTTACTATCCATGGCTGATAATTACAGTTAGTT
s cb4.chrX             13696743 227 - 21540570 TGGTTCTATGGCCGAGACGAGCCGGATCGTTGGAGTGTCGGAGGGGTATAAAGAGAAAAGC----GAAACAATCAAAATTGATTGGTTC-ATTTGCAGGTATGGCCTCTCCCACAGAAAATTATCTACGGCTCCAAGAACCGTACGCTTACTTATGATAAAATCGGAATCGATCTTGGAGACAAGAAGGATTGCGATGTTCTCCTGGCAATGGCGGACAATTATAGTGAGTT
i cb4.chrX             C 0 I 38
s caeRem4.Crem_Contig0  4446636 225 +  4500979 TGGTTCTACGGCCGAGATGAGCCGGATCGTTGGAGTGTCGGAGGGGTATAATCCAACGTAT-----AAACAGTC--AGTTCACTCTTTCAAGTTACAGGTTTGGCCACTTCCCCAAAAAATCATCTATGGGTCTAAGAACCGAACTCTCACTTATGACAAAATCGGAATTGATCTTGGAGACAGAAAAGATTGTGATGTTCTCCTGTCAATGGCTGATAATTACAGTTTGTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576        2 222 -   128984 TGGTTCTATGGCAGAGACGAGCCGGATCGTTGGAGTGTCGGAGGGG--TAAGCCATTTTAT-----AAACAACC--GTTTCATCTTATCATATTGAAGGTTTGGCCTCTTCCCCAGAAAATTATCTATGGGTCGAAAAACCGAACACTCACCTATGACAAGATAGGAATTGATCTTGGTGACAAAAAAGACTGCGATGTTCTTCTGTCGATGGCCGACAATTATAGTTAGT-
i caeSp111.Scaffold576 N 0 C 0
s caePb3.Scfld02_0      2957753 224 -  4147112 TGGTTCTACGGCCGAGACGAGCCGGATCGTTGGAGTGTCGGAGGGGTATAATCTATCGTAT-----aaacaatc--agtttttcttatcattttgcaGGTTTGGCCACTTccccaaaaaattatctatgGGTCCAAAAACCGAACACTTACCTATGATAAGATTGGAATCGATCTTGGAGACAAGAAAGATTGTGACATTCTATTGTCAATGGCTGATAGTTACAGTTCGT-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   115750 224 +   152553 TGGTTCTACGGGCGTGACGCTCCGGATCGATGGAGTGTCGGCGGGGTATAAGACAAATTTT-----AAACACTAGAAGTTTATAATG---ATTGACAGGTCTGGCCGCTTCCTCAGAAAATTATTTATGGATCGAAAAATCGAACTCTTACTTATGACAAAATTGGAATTGACCTTGGTGATAAAAAAGATTGCGATATTCTTTTGTCGATGGCGGACAACTACAGTTTGTT
i caeJap4.Scaffold4951 C 0 I 13

a score=-5228.000000
s ce10.chrX             2223755 42 + 17718866 TGTAGAAAAAATATATTTTTTTTACCTTCAAAATTTCGAATT-----
s caeRem4.Crem_Contig0  4446861 34 +  4500979 --------ATAATCCATTTGATCAAGAAAAATAGTTGTAATT-----
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold576      224 35 -   128984 -------GATATCTAATATGATAAGGTTCTAAATGTAAAGTT-----
i caeSp111.Scaffold576 C 0 I 2
s caePb3.Scfld02_0      2957977 35 -  4147112 -------CAGACctaatttgataaaaattaaaacttgaaata-----
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951   115987 25 +   152553 ----------------------CATAAAGAAAACCTGTCATTTTTAT
i caeJap4.Scaffold4951 I 13 C 0
e cb4.chrX             13696970 38 - 21540570 I

a score=225989.000000
s ce10.chrX             2223797 293 + 17718866 TCAGTGAATAAGTGGTTGTTCCCATTCCCAGTTGAAATGAAAACTGGTGGGACTGAAGATTTTATTATAACTGTCACTGTAAAAGACGAGTGTCCCAGCGGTCCACCAGTACACGGAGCCAGTGAAGAATGTATGCTTG----AAAAAAAAGTTTAATTTGGTGTTA----------ACTTGT-ATTCAGATCTACTTCGAGTCAGTCTAACAGAAGCGGTTATCAATGCTCAAACTGTGTGGGGAGCATTGAGAGCAATGGAATCACTTAGTCATTTGGTTTTTTATGATCATAAGTCACAAGAAGT
s cb4.chrX             13697008 301 - 21540570 tcAGTGAACAAATGGTTGTTTCCATACCCAGTTGAGATGAAAACCGGTGGAACTGAAGATTTCATTATCACAGTCACAGTGAAAGAAGAGTGCCCAGGAGGACCACCAGTTCACGGAGCTAGTGAGGAGTGTATGT-------TTTACTATAATTGGTTAAAAAACTACAGACCACTATCTGTATTGCAGATCTGTTGCGTGTCAGTGTCTCGGAGGCAGTCATTAACGCACAAACCGTATGGGGAGCACTTCGCGCAATGGAAACATTGAGTCATCTGGTTTTTTATGATCAGAAGTCTCAAGAGGT
i cb4.chrX             I 38 I 6
s caeRem4.Crem_Contig0  4446896 296 +  4500979 ACAGTGAATAAGTGGTTGTTCCCATACCCggttgaaatgaaaacagGAGGCACTGAAGATTTCATTATAACTGTGACAGTGAAAGAAGAGTGTCCGAGTGGACCACCAGTTCATGGAGCCAGTGAAGAATGTATGCGAG---ATATAATAAGTGTGGCAGATTAACTA---------ATCTTTATCTCAGATCTTTTACGTGTCAGTCTCTCAGAGGCAGTAATTAATGCGCAAACCGTTTGGGGTGCACTTCGCGCAATGGAGTCATTGAGTCATTTAGTTTTCTATGATCAGAAATCTCAAGAGGT
i caeRem4.Crem_Contig0 I 1 I 5
s caeSp111.Scaffold576      261 293 -   128984 ACAGTGAACAAATGGTTGTTCCCGTTTCCGGTGGAAATGAAAACCGGTGGGACTGAAGATTTTATTATCACAGTTACGGTGAAAGAAGAATGCCCAAGTGGTCCGCCGGTTCATGGAGCAAGTGAAGAATGTATGAGAC-------AATAAATAAAGACAAATTAGAaag-------atttgt-tttcagaccTTCTTAGAGTTAGTCTTTCGGAAGCTGTTATCAACGCTCAAACAGTATGGGGTGCGCTTCGAGCAATGGAGACATTAAGTCAATTGGTATTCTATGACCAGAAATCTCAAGAAGT
i caeSp111.Scaffold576 I 2 I 2
s caePb3.Scfld02_0      2958014 295 -  4147112 ACAGTGAACAAGTGGTTGTTCCCATTTCCAGTTGAGATGAAAACAGGAGGAACTGAAGATTTCATTATAACGGTTACAGTCAAAGAAGAATGCCCAGGGGGACCACCGGTGCATGGAGCAAGTGAAGAATGTATGGGAACTGTTAGAATAAACTTAATTGACTAACAAGG-------A------TTTCAGATCTTCTGAGAGTCAGTCTTTCGGAAGCTGTTATCAATGCTCAAACCGTTTGGGGAGCTCTTCGAGCCATGGAAACATTGAGTCAATTGGTTTTCTACgatcaaaaatctcaagagGT
i caePb3.Scfld02_0     I 2 I 27
s caeJap4.Scaffold4951   116012 289 +   152553 --AGTGAACAAGTGGTTGTTTCCATTCCCGGTAGAATTAAAAACGGGCGACACGGATGATTTTATAATCACTGTCACAGTCAAAGAAGAGTGTCCAGCAGGACCACCAGTTCATGGGGCTAGCGAAGAATGTAAGGGAC------CAATCGAGTTGACGGCATTATA----------TCTTGT-TTTCAGATCTGTTGCGTGTCAGTCTCACCGAGGCGGTCATCAATGCGCAAACTGTCTGGGGAGCACTTAGAGCGATGGAATCTCTGAGCCATTTAGTGTTCTACAATCAAAAATCTCAAGAGGT
i caeJap4.Scaffold4951 C 0 C 0

a score=-27601.000000
s ce10.chrX             2224090  83 + 17718866 AAGTCATTGGAAAAAAAACTAAAACCAATGTTC-----------------------------------------------------------------------------------------------------TAGTTTCTAGTTTATCGCTAAACTAGACTAAATATTTTAACTATAACTGA
s cb4.chrX             13697315 156 - 21540570 gggttactgtaaaacaGATTA-----TGTGTTAACGTTTGGTATTTTCTTGCCGGTATTACGGGTCAAGAGCaccggtcaataagacatgcaaaaacatattttatgTTGGTTTAGGTTGTTTTGACACtcttcaagagtctggagcacTGCTATA-----------------------AGTGa
i cb4.chrX             I 6 I 106
s caeRem4.Crem_Contig0  4447197  22 +  4500979 --------------------------------------------------------------------------------------------------------------------------------------TAGATTCCAGGGTATTGCCAGa----------------------------
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold576      556  18 -   128984 --------------------------------------------------------------------------------------------------------------------------------------TGCATCCTTCAgtgttct--------------------------------
i caeSp111.Scaffold576 I 2 C 0
s caeJap4.Scaffold4951   116301   8 +   152553 ----------------------------------------------------------------------------------------------------------------------------------------------------TAGCTAga----------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2958309  27 -  4147112 I

a score=-1390.000000
s ce10.chrX             2224173 24 + 17718866 TAAAATATCTACCGTATTTCATCT--
s caeSp111.Scaffold576      574  7 -   128984 -----------------ttcattt--
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951   116309  6 +   152553 --------------------atttac
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2958309 27 -  4147112 I
e cb4.chrX             13697471 106 - 21540570 I
e caeRem4.Crem_Contig0  4447219  0 +  4500979 C

a score=0.000000
s ce10.chrX             2224197 66 + 17718866 AGTAGTAATTCAACCAACTATTTTCGATTGAAAAATTATATCTCAGTTAATTTTAATGAACATCTT
e caePb3.Scfld02_0      2958309 27 -  4147112 I
e caeJap4.Scaffold4951   116315  0 +   152553 C
e cb4.chrX             13697471 106 - 21540570 I
e caeSp111.Scaffold576      581  0 -   128984 C
e caeRem4.Crem_Contig0  4447219  0 +  4500979 C

a score=-11148.000000
s ce10.chrX             2224263  48 + 17718866 ACT--------------------------ACAAAACAAAGAA--------AATTAAGCAGTATTTTGAAAG---------------------------TTGAACATTTT
s cb4.chrX             13697577 109 - 21540570 ttttggcacattttggtactgaaaacgtgataAGACATGTGATCCCCAGCAATCAGAAAATAGTTGCAAAGAATtccatctaggtctgttttgtatcctccaaaatttt
i cb4.chrX             I 106 C 0
s caeRem4.Crem_Contig0  4447219  18 +  4500979 --------------------------------------------------tatcaaa-----------------------------------------ttaaaaatttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951   116315   7 +   152553 --------------------------------------------------aagaaaa----------------------------------------------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2958309  27 -  4147112 I
e caeSp111.Scaffold576      581   0 -   128984 C

a score=-4673.000000
s ce10.chrX             2224311 71 + 17718866 AGAATAGAACATTAGACAACTACATACTGAGATATAAACTACAAAC------AAAT-------ATGC---ACTTACTTATTCAAAAG
s cb4.chrX             13697686 77 - 21540570 caaattgaac----------taaatattgacagccaagctccagactcctgaaaatgatcaaaatgccCGACTAAACTGACGAATAt
i cb4.chrX             C 0 I 12
s caeJap4.Scaffold4951   116322  9 +   152553 ----------------------------------------------------aaat-------atgc---a----------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2958309 27 -  4147112 I
e caeSp111.Scaffold576      581  0 -   128984 C
e caeRem4.Crem_Contig0  4447237  0 +  4500979 C

a score=-3264.000000
s ce10.chrX             2224382 20 + 17718866 TTTATT--ATGAACCTGTGTAA
s cb4.chrX             13697775  8 - 21540570 cttattga--------------
i cb4.chrX             I 12 C 0
s caePb3.Scfld02_0      2958336  6 -  4147112 TTTATT----------------
i caePb3.Scfld02_0     I 27 C 0
s caeJap4.Scaffold4951   116331  2 +   152553 --------------------aa
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576      581  0 -   128984 C
e caeRem4.Crem_Contig0  4447237  0 +  4500979 C

a score=-4394.000000
s ce10.chrX             2224402 24 + 17718866 CAAATAACTTTCATTTCACTTTTG
s cb4.chrX             13697783 22 - 21540570 ccagtA--CTGTATTTCAAATCTT
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold576      581 11 -   128984 ---------caaatt----acTTT
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2958342 16 -  4147112 --------Tcccatttccaatttt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   116333 22 +   152553 -aaaatgttttttttttaaattt-
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4447237  0 +  4500979 C

a score=865935.000000
s ce10.chrX             2224426 1020 + 17718866  
s cb4.chrX             13697806 1032 - 21540570  
i cb4.chrX             I 1 I 36
s caeRem4.Crem_Contig0  4447237 1022 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576      592 1016 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2958358 1020 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   116355 1079 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-2438.000000
s ce10.chrX             2225446 31 + 17718866 ATCAAAAATCAACTGTATACTATAATCGTTT
s caeRem4.Crem_Contig0  4448259 31 +  4500979 ATCAAAACTTTACAAAGCCGTAGAAATTagg
i caeRem4.Crem_Contig0 C 0 I 8
s caeSp111.Scaffold576     1608 31 -   128984 ATCAAGAACCggaattcttctgaaacccATG
i caeSp111.Scaffold576 C 0 I 2
s caePb3.Scfld02_0      2959378 31 -  4147112 ATCAAAAACCAAGAGAGTActcaaaaatcag
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951   117434 31 +   152553 TATAAATTCCAACATtcacatatttattttt
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13698838 36 - 21540570 I

a score=122667.000000
s ce10.chrX             2225477 137 + 17718866 AATTCTAGATACTACTATTGTGATCCAACAAACTTCAATGGAACGGTGGCGCAGAAGGAATTGGTTTGGGGTGGTATTGCTGCAATTTGGGGAGAGTTAGTGGACAACACTAATATTGAAGCTAGACTTTGGTAAGT
s cb4.chrX             13698874 137 - 21540570 aattgCAGATACTACTACTGTGACCCAACCAGTTTCAATGGAACTGATACTCAGAAAAATCTAGTGCTTGGAGGAATAGCTGCGATCTGGGGAGAGTTGGTGGATAACACTAATATTGAAGCTAGATTATGGTGAGT
i cb4.chrX             I 36 C 0
s caeRem4.Crem_Contig0  4448298 137 +  4500979 tgtttcagatattactATTGTGACCCTACAAACTTCAATGGTACTGATGCCCAGAAGAACTTGGTTTTGGGTGGTATTGCAGCAATCTGGGGAGAGTTGGTGGATAATACCAACATTGAAGCCAGACTTTGGTAAGT
i caeRem4.Crem_Contig0 I 8 C 0
s caeSp111.Scaffold576     1641 137 -   128984 TTTTTTAGATATTACTACTGCGATCCAACTAATTTCAACGGAACTGACACACAGAAAAACTTGGTTCTAGGTGGAATAGCTGCAATTTGGGGAGAACTGGTGGATAATACCAATATTGAAGCAAGATTATGGTGAGT
i caeSp111.Scaffold576 I 2 I 28
s caePb3.Scfld02_0      2959411 137 -  4147112 cttttcagGTATTACTATTGTGACCCAACAAACTTCAATGGAACCGACACTCAGAAGAATTTAGTGCTAGGTGGTATTGCTGCAATATGGGGAGAATTGGTGGACAACACCAACATTGAAGCCAGATTATggtatgt
i caePb3.Scfld02_0     I 2 I 153
s caeJap4.Scaffold4951   117465 132 +   152553 -gattcagaTACTACTACTGTGATCCCACAAACTTCAATGGTACTGATGCTCAAAAAGAATTGGTCCTTGGAGGAATTGCTGCCATCTGGGGAGAACTCGTTGATAACACCAATATAGAAGCTAGACTTTGGT----
i caeJap4.Scaffold4951 C 0 C 0

a score=-1186.000000
s ce10.chrX             2225614 9 + 17718866 ATTGTCTGA
s cb4.chrX             13699011 8 - 21540570 G-TTTGTTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4448435 8 +  4500979 G-TGACCAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold4951   117597 8 +   152553 -Ttgtttga
i caeJap4.Scaffold4951 C 0 I 20
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeSp111.Scaffold576     1778 28 -   128984 I

a score=-692.000000
s ce10.chrX             2225623  5 + 17718866 ATGGT------
s cb4.chrX             13699019 11 - 21540570 TGGGTACTGTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4448443  5 +  4500979 GTGGT------
i caeRem4.Crem_Contig0 C 0 I 27
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeJap4.Scaffold4951   117605 20 +   152553 I
e caeSp111.Scaffold576     1778 28 -   128984 I

a score=1091.000000
s ce10.chrX             2225628 210 + 17718866 CAagtagcttcagtggggaaattggttcaagaaaatcatggcaaacatttttttttatttctaaattttataggattttttgaaaatataaaaaaatctcagttattgcc-tgattaaatttaaacctctcgccaaaactacttgttcgatgaagcgcccttttg----tttttaatttac---attaattgttttttactcatttGTTGTGTATCTT
s cb4.chrX             13699030 198 - 21540570 AAGGTATTTTTAG--------TTAGCTCTTGAAGATGTT-----ACATTTTTAGTTCCTCCTACTATTCATTGAATATTTTGCGAGAActgaattattt--atcattacagtgcaaaattttgaaccctttgt-----cttcatttttaaaaaggacctcttctagaattttttgctTTACCAAAGAACTtccgtttgacacatttttcttgCATATT
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeJap4.Scaffold4951   117605  20 +   152553 I
e caeSp111.Scaffold576     1778  28 -   128984 I
e caeRem4.Crem_Contig0  4448448  27 +  4500979 I

a score=0.000000
s ce10.chrX             2225838 321 + 17718866 AAAATGAAGGACTTTGAAAAATAACTGAAAGTGCGTAAAAGTGTAAAGTATAGTCATTTCATTCATGGCGGTGTTACGCAttttcagttatttgttgatgaacaaattgcatttatcatgctgtttctcttattttcttataaaaatacaggagaaaaaaataatataaatgaaaaaatgaaaacgcgctccatcgaaAAAATTGTTTTAGGATGTCCTATGAAAATGTAGAATTTTTTTTTAACTTTTTACAAATTTTTTCGGTCATTGTAGTACCATAAATATGCTTTATCATCTTCACAATTGAGTGGGCTATGAATA
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeJap4.Scaffold4951   117605  20 +   152553 I
e cb4.chrX             13699228   0 - 21540570 C
e caeSp111.Scaffold576     1778  28 -   128984 I
e caeRem4.Crem_Contig0  4448448  27 +  4500979 I

a score=259.000000
s ce10.chrX             2226159 17 + 17718866 AATTTTAAAGAAGCTAT
s caeRem4.Crem_Contig0  4448475 16 +  4500979 AATTCTagcgaaaa-at
i caeRem4.Crem_Contig0 I 27 C 0
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeJap4.Scaffold4951   117605 20 +   152553 I
e cb4.chrX             13699228  0 - 21540570 C
e caeSp111.Scaffold576     1778 28 -   128984 I

a score=-496.000000
s ce10.chrX             2226176 72 + 17718866 TTCCAAAACCGTCGTTCACGTAG--AATTATTAAAACTTCTTTTGTCT-TTGAAAGTGCTAGAAAACTTCCTGGA---------
s caeRem4.Crem_Contig0  4448491 65 +  4500979 ttcaaa-------aatcactctgc-AAAGTTTCACACTTTTTGTTCTC-TTGTGAATG-TATATTTCTTTGTgga---------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576     1806 83 -   128984 ttctgaatttttcattcactttGCAAAAgctttgaactttttgctCCCATTGTAGGTG-TAAGACTTTCAAAGAActtccgttt
i caeSp111.Scaffold576 I 28 I 4
e caePb3.Scfld02_0      2959548 153 -  4147112 I
e caeJap4.Scaffold4951   117605 20 +   152553 I
e cb4.chrX             13699228  0 - 21540570 C

a score=1737.000000
s ce10.chrX             2226248 13 + 17718866 CTCTCTGAATTTC
s caeRem4.Crem_Contig0  4448556 13 +  4500979 atttccgtttttc
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold576     1893 13 -   128984 tttcttgaatttt
i caeSp111.Scaffold576 I 4 C 0
s caePb3.Scfld02_0      2959701 13 -  4147112 ccctcaGAATTCT
i caePb3.Scfld02_0     I 153 C 0
e caeJap4.Scaffold4951   117605 20 +   152553 I
e cb4.chrX             13699228  0 - 21540570 C

a score=1643.000000
s ce10.chrX             2226261 35 + 17718866 --------AAATGTTTCCGACGTGCCATCTAACACCAT--GATTT
s cb4.chrX             13699228 44 - 21540570 TAATTTCTAAAACGTGCCAACTTGC-AACTACCATTTCAAGatgt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4448575 42 +  4500979 GAATAGCT-AATTGCGCTAACGTGCTAACTaacattct--gattt
i caeRem4.Crem_Contig0 I 6 C 0
s caeSp111.Scaffold576     1906 35 -   128984 --------ttattcgaaagaCGTGTAGAATggaaatgt--gattt
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2959714 35 -  4147112 --------AAATAAAGCCAACGTGCTAATTAGCAATAT--GATTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   117605 20 +   152553 I

a score=513899.000000
s ce10.chrX             2226296 1034 + 17718866  
s cb4.chrX             13699272 1080 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4448617 1122 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576     1941 1035 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2959749 1072 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   117625 1011 +   152553  
i caeJap4.Scaffold4951 I 20 I 1343

a score=-13766.000000
s ce10.chrX             2227330 50 + 17718866 GCCGCGATGTGAAAACCAGGCAGTGCTGCCAGTTATCTCTCACAATTTGC----------
s cb4.chrX             13700352 32 - 21540570 ggCGAAG----AAAG------------------------TGACACAAGACAACAATTGGC
i cb4.chrX             C 0 I 31
s caeRem4.Crem_Contig0  4449739 36 +  4500979 GAAGGAgtagaaaaa------------------------ttattgtgtGCGTTAGttgga
i caeRem4.Crem_Contig0 C 0 I 13
s caeSp111.Scaffold576     2976 31 -   128984 AGTTAGGCGTAGAGG-----------------------AGAAGAGGCTGCAATG------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2960821 30 -  4147112 agacaaGTGGTGTGG------------------------GTGCAACATGCAGTG------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I

a score=-3107.000000
s ce10.chrX             2227380 26 + 17718866 TTCTAGACCTTCTTTTAAAGCAACTA---
s caeRem4.Crem_Contig0  4449788 16 +  4500979 -------------ctcgggattttttgtt
i caeRem4.Crem_Contig0 I 13 C 0
s caeSp111.Scaffold576     3007 12 -   128984 --------------TTACAACAACTA---
i caeSp111.Scaffold576 C 0 I 47
s caePb3.Scfld02_0      2960851 12 -  4147112 --------------TTATGACTTTTG---
i caePb3.Scfld02_0     C 0 I 18
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13700384 31 - 21540570 I

a score=90.000000
s ce10.chrX             2227406 9 + 17718866 TCTTTTTTT-
s caeRem4.Crem_Contig0  4449804 7 +  4500979 --ttttttt-
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2960881 9 -  4147112 -ttttgTTTC
i caePb3.Scfld02_0     I 18 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13700384 31 - 21540570 I
e caeSp111.Scaffold576     3019 47 -   128984 I

a score=-7421.000000
s ce10.chrX             2227415 57 + 17718866 ACAAATTTAAGCCTCTACTCAATTTTTAGAC---ATGCTGACAACGCCATGTAGCAGTAA
s cb4.chrX             13700415 28 - 21540570 ACAA------------------------ATCTAAAACCTAACAGCGTCATTT--------
i cb4.chrX             I 31 C 0
s caeRem4.Crem_Contig0  4449811 19 +  4500979 -----------------------------tc---agcctaatAA-ATcaagt--------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2960890 18 -  4147112 ACAA-----------------------TGGC---aacgaaatgg----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3019 47 -   128984 I

a score=-15323.000000
s ce10.chrX             2227472 391 + 17718866 AAAATAATATTATTCACTGACTACACTTTTGAAAAATTTAACAAAATGTGAAAGTTGTTATCTTCATTTTATATACAAAAAAATTAAAGTATGCCC---------AAAAAAAGAACAGCTG----ATTTTA---------------TTA----TGTTTCTTTGTTATAAAAAATCATGAAGAACAAATGC----------CGGTGGCTAGAA-GTTGAAGCATGTGAATAAAAATCATGAC------TTTTGTGATAACTT------TGCGGGTGTTAATGACTCGTGATTATTTTATGATAA-CACAA--CAGACAGC-ACATAAACTTACAGAAACTTCTAGTTTCAGTTGGAACCGGAAATAGCATTCCGAAGTATTATGAACGATGAGGGGTTGGA----------------------AATTTGAGGAAGTGTGATGAATAGTTGATTTAAAAATTGGAAACCGAttt----
s cb4.chrX             13700443 335 - 21540570 ----------------------------ATGCCATCATT--------------GTCT----------------taccaaaaatttc----ataatt-----------acCGAAACCATATG----ATTCTG---------------TGT---ATTATGTC-----------------CCATAGGCAAAA-----------CTGAACTAACCGCATCACACCATGTGAAC-AAAGTCATGACTCccagttttttgataactctctTTTTGTGGGTGTTAGGAACTCGTGATCATCTTTTGATAA-CGAAAATTGGCATTTGGCATCGACTTATGGAAAGTTCCAGTTGCCGGAAGTGCATAAAATTCGACTGTTTTG-GGGACTTACCATTAGGAATTTAA--------TGGTCTAAAGCAAATATTTAGTGAGGGacgaaac-------atttgaatttcaaaaagaaacacaGTT
i cb4.chrX             C 0 I 105
s caeRem4.Crem_Contig0  4449830 351 +  4500979 ----------------------------ctgaaattatttgaaacg-----aaGTTG----------------TGCTAAATGTGAA----ACACTC---------AAATCAAAAACACATGCCACATTATGAAATGCGGTGATTTCTGT---ATTTTGCCTAAACGGGAGAAATCAACTCCAAACAAAGGAACGTAGTGTCTGTTGTCACCA-ATCACACCATGTGAAC-CAAGTCATGAC------TTTTATGATAACTC------TGTGGGTGTTAAGAACTCGTGAT-ACTTTCTGATAA-CGGCA--TAGAAATT-ACATAAACTTATAGAATGTTCGAGTTGCCGGAA-CAATCAAAGCTC-----------ATGAATTAAAGTTGGGGACTCAT--------TG----------AATTGTTatgaaattgtcaaat-------ttttga---ttattcagAGATAGTGT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576     3066 353 -   128984 aaaataatttcatcattttataGAGACAGTGAGATATTGAGTGAAA---------TG----------------AACAAAGAACATA----ATG------------AAATA---ATTGCATGTCA-ATCTTG---------------tggtttttttcgttttggtGAGAGGAATTATGTGTCAAAAAC------------CTATAGAAACCC-ATCACACCATGTGAAT-GTAGTCATGAT------TTTTGTGATAACTT-CTTTCTGGGGGTGTTGATAACTCgtgat-ttcatttgataa-CGGAA--CAATGGGT-TTGTAGACTTACAGAATGTTCTAGTTGATGTAACAACCGGAAATTA-----------TTCATAGAGCATGAGGGACTCACAAATTAGAtgtttaatttcagaactcTATGGAATTAATaa------------tgaaact----------gat----
i caeSp111.Scaffold576 I 47 C 0
s caePb3.Scfld02_0      2960908 337 -  4147112 ---aaaattcCA-------ATGATGACA--GAAATCTCGAGGGCAG-----AACCTG----------------AACAAAGAACATG----ATACTAATCGATGATAAATAAATATAACATGCCA-ATCTTG---------------TGG----TTAAGTTTCATTAAGAGTCA--GTGTGTCGAAAATG-----------GTATTGAGACCC-ATCACACCATGtgaat-atagtcatgac------ttTTGTGATAA----CTCTTTGGGGGTGTTGATGACTCGTGAT-TTTATTTGATAAGAAGAA--CAATGGTTGTTAGAAACTTACAGAATGTTCTGGTTGATGCAATaaccggaaattc-----------aaaataggaAATGAGGGACTATC-----------------------------GGAATTAAGAAA----------GTAAAACTTGGGGAccggaag----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I

a score=290.000000
s ce10.chrX             2227863 8 + 17718866 tttaataa-
s caeRem4.Crem_Contig0  4450181 8 +  4500979 -ttcatcaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576     3419 8 -   128984 tttcaaaa-
i caeSp111.Scaffold576 C 0 I 302
s caePb3.Scfld02_0      2961245 8 -  4147112 tttcgaaa-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13700778 105 - 21540570 I

a score=-568.000000
s ce10.chrX             2227871 14 + 17718866 ccgttctttgtcgc
s caeRem4.Crem_Contig0  4450189 14 +  4500979 tcattttctgacGC
i caeRem4.Crem_Contig0 C 0 I 222
s caePb3.Scfld02_0      2961253 11 -  4147112 -tatttcatcaa--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13700778 105 - 21540570 I
e caeSp111.Scaffold576     3427 302 -   128984 I

a score=-607.000000
s ce10.chrX             2227885 81 + 17718866 attttttgatcgtttatattacgatatttcgttgattaaggtacatttaaagAATAATGAATTAATGTGAAATAAACGACT
s caePb3.Scfld02_0      2961264 59 -  4147112 atttct------atCAAATCATGGTGTACCATGTCGCAAAATACAGCT----------------GTTCTACACGAACACCT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13700778 105 - 21540570 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-859.000000
s ce10.chrX             2227966 42 + 17718866 GAAACATACaataaaa-aataatattataatttaGAAAAAGTC-
s cb4.chrX             13700883 42 - 21540570 GGGGCACaagacaaaa-aatattaaGACAATAT-AAATAAATTT
i cb4.chrX             I 105 C 0
s caePb3.Scfld02_0      2961323 36 -  4147112 --GACACTTCTCGAAGTAGTCTTATCAT----T-GAACAAGTC-
i caePb3.Scfld02_0     C 0 I 214
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-3003.000000
s ce10.chrX             2228008 280 + 17718866 ATTAGGCTCATTCTTCGtcgatattcttaacggccataaaaaatttctgaaatttttttattgataagtttcaacacaaaatttgtttattcgagttcattttgggtttatatgctcagaataccccaaaccgttagtAATGAAAATAGGGCTTTTCCAAAAAATCATCTTGGGGATTTTATTTGAAATGACGCCttttttatattaaaaaaaaacgaaaaaattttaaaGAATTTTCAACTTGAAATTTGTTTATTTGAGTACATTTTGGATCCATTTT
s cb4.chrX             13700925 159 - 21540570 CCGAG----AAGCTTTGGTGTTTTCTCTAAAAG------AAGCCTACCCAAAT---------------CTGCAAcgttaagcttaatta-----------tctcgatttttgtg---agaGATCTCTAAaac------------------------------------------------atgtcaactgataacttaTTTA----AAATAATATCgctaaaatttta------------------------ttagttaacaaatttttg------ttgt
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2961359 214 -  4147112 I
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-5779.000000
s ce10.chrX             2228288 103 + 17718866 TTTCATATTAACCAGCCATAATTG------------CTCAAATCATACCATTGCGCTAACACAGATTTGGGCATGAGATAAAAAAGCGTGACCAGAAACTGAGCTCTTGGGAAAA
s cb4.chrX             13701084 101 - 21540570 --------cttctt--caaaacttgggataattgagctcaaagttgacgagtTCGCTGG---gcgtctttaaaaaaaataaggtGACGGGA-AAGAAATGATCATATTGACAAAA
i cb4.chrX             C 0 I 141
s caePb3.Scfld02_0      2961573  55 -  4147112 TCTCATGTTATCCA--TAAAATCT---------------------------CTCGTTAG-----GTTTTCACACA------------------------TATCATAT--GCAAAA
i caePb3.Scfld02_0     I 214 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=7.000000
s ce10.chrX             2228391 142 + 17718866 TTGCTTA-TCAAGATCTCTATTCAAATCCGTTAAAACTGCTGTAATACATCAAACCGTGACAAAATCTGAAATAATTC-TCCATCTGATTTGAAACCTGAGTACTTGGAAGTTCAAGTGTAGGTAGCTAATATTTTTCAAAAAT
s caePb3.Scfld02_0      2961628 119 -  4147112 ---CTTACTCAAGCCTTCTCTTACTGTTCGTT-----TTCTctaat----------------aaaattgattttgttcaTCCATCTTCTATTCATTTCATATAACT-CAAGTGTCAACATAGTTATCTGATATAGATTAAAAAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13701185 141 - 21540570 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=38.000000
s ce10.chrX             2228533 1 + 17718866 T
s cb4.chrX             13701326 1 - 21540570 C
i cb4.chrX             I 141 C 0
s caePb3.Scfld02_0      2961747 1 -  4147112 C
i caePb3.Scfld02_0     C 0 I 76
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-492.000000
s ce10.chrX             2228534 93 + 17718866 TGGTAGTTTGCCAAAACTTTTGCTGGAAATTAAAAAAAATCTAAAAATTTAGACAAAATCCCTAGTCTACCTTTAAATGAATGTCTT---TCTAAA
s cb4.chrX             13701327 55 - 21540570 TGATAGATTGC----------------------------------ACTATGGATATTACCTCCACCATTCTTT-------ATATCTTTTGTCTAAA
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2961748 76 -  4147112 I
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-4414.000000
s ce10.chrX             2228627 84 + 17718866 ---------------ATTACAAAAACTGTTGAATTACATTTTTTTTTCGATAAAATCTATATTTTCAATAACCttttatttaaaattaaaaaaaaaaCA-------
s cb4.chrX             13701382 59 - 21540570 AGTTTACCGTATTCCATCA---------------TCTTCTTCCTTTCCAATc-----------ttca--------------caaattcaaaataaaacg-------
i cb4.chrX             C 0 I 35
s caePb3.Scfld02_0      2961824 63 -  4147112 ---------------atcaaaaaagatggaaagcGATTCTTCCATTTCAACA-----------CT-----------------AGATCCCTCACAAAAACCTTTTCT
i caePb3.Scfld02_0     I 76 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=-347.000000
s ce10.chrX             2228711 47 + 17718866 GCTCCAGAAATTATTTCCATACTAACATAGAATTAACGGTGGCAGTA
s caePb3.Scfld02_0      2961887 28 -  4147112 GATctataaatt-------------cgaaaaatgaatagta------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   118636 1343 +   152553 I
e cb4.chrX             13701441 35 - 21540570 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=342.000000
s ce10.chrX             2228758 5 + 17718866 GTATT
s caeJap4.Scaffold4951   119979 5 +   152553 gTGTT
i caeJap4.Scaffold4951 I 1343 C 0
e caePb3.Scfld02_0      2961915 0 -  4147112 C
e cb4.chrX             13701441 35 - 21540570 I
e caeSp111.Scaffold576     3427 302 -   128984 I
e caeRem4.Crem_Contig0  4450203 222 +  4500979 I

a score=5323.000000
s ce10.chrX             2228763 14 + 17718866 ----GTATTAAACTGCGC
s caeRem4.Crem_Contig0  4450425 14 +  4500979 ----gtaTGAAACTGCGC
i caeRem4.Crem_Contig0 I 222 C 0
s caeSp111.Scaffold576     3729 13 -   128984 ----GTGTTGAACTGCG-
i caeSp111.Scaffold576 I 302 C 0
s caePb3.Scfld02_0      2961915 14 -  4147112 ----GTGTTGAACTGCGC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   119984 15 +   152553 GAATGCAT---ACTGCGC
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13701441 35 - 21540570 I

a score=27470.000000
s ce10.chrX             2228777 250 + 17718866 GAAACACAGCTC----------CTGTC-------ATT------TCAACGACACTTGTTGTGTC------GCCCGTTATCTTGATTTTCGGCACGTGTCTATGGTTTC----TTTGCTTGATCTAC--CTACCGTA----GACCCAG-ATT--------------------TCGAAGTTTTATAGACCGACCTGGCTTTT--GGGTTGATTGGAAAACGGAACAAAAAACAGCTAAAT-----TTTCTATTGTCCGTTTCTGCGCTGTTAAACTGAATAAAACTTGTTCTCTTTGCTTTGGCT-----------------TAGAATTCAGAGTGA
s cb4.chrX             13701476 215 - 21540570 GAAACAAGGCTC----------CTTCCCTTGCCCAGC------CAATCGACACTTTCCTTCATTAAAAAGATTATTATCTAGATGCGCGGCACGTGTCAATGGTTTT----------------CT--CTACCGTA----GACCtag-att--------------------tcgaagttttatGGAT---------CTTC----GGTACT--------TGAACAAAAAACTGCTAATG-------------ACTC-TTTatgtcctgaa---------aaaaactggcTTGGATTGAGATGCA----------TCAAGATTAAAATtca------
i cb4.chrX             I 35 I 38
s caeRem4.Crem_Contig0  4450439 245 +  4500979 GAAACAAGGCTC----------TTGTC--------GA------CAACCGACACTTGTCCCCCT------GATTGCTATCTTGATGCGCGGCACGTGTCAATGGTTTTCCTCTCT------CCCCC--TTACCGTA----AACCCAG-ATC----------AGCA-----GAAGAAGTTTTATGGAC---------TTTTTCCGgataaa--------gcagaaaaaaacatcTGACGGTGTTCTTTCTTTGTTC-GTTTTTTCCTGAAGATTTAC--AAAACCTGCTTTTTCTT--TCTGCACCTTCTCTATTCAA---CAGAAACCA------
i caeRem4.Crem_Contig0 C 0 I 5
s caeSp111.Scaffold576     3742 225 -   128984 ----CCAAGCTC----------GTGTC--------GC------CAAACGACACTTGTCCTTCT------GATGGTTATCTTGATCTGCGGCACGTGTCTATggtttc----ttt------ccttt--ttacCGTA----GACCTAGTTTCtag-------ggaa-----aaagaagttttatGGAC---------TTTT--Aggat------------aaagaaaaaacagctAATG-----AtcctttctttctgttttccggAGAATCACGGA--AAAACTTGCTTTTTGTTAAATTTCT-----------------TAGAAAACACAGCGA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2961929 224 -  4147112 GAAACAAAGCTC----------GTGTC--------GC------GATTCGCCACTT-CCCCTCT------GATCTTTATCTTGATTTGCGGCACGTGTCTATggtttt--catct------ctttt--ttacCGTA----AACCTAG-ATCtag-------agaa-----aaataagttttatgGAC--------TTTTT--Cggatga----------aaggaaaaaacagcTAATG------TCcctttattctgtttttttctggatatcTGG--GAAACTCGTTTTTTGCTTCGATTCT-----------------TCGAA-------TGA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   119999 244 +   152553 GAAGCAAAACTCGAGGTGAAAACTGTC--------GTACGCCACCACCGACAGTC-CCTGCTT------GATCGTTATCTTGATTTGCGGCACGTGCC----GTTTC----TTT------CCGTTAACTACCGTATTCCAACAGAG-ATTTCTTCCTTTCCGAATTCTCCAAAAAGTTTTATGGAC---------TTTT-ACGGAT-----------GAGGCAAAAAACAGCTAACG-----ACCCTTTCATCC----------TGAAAA-------GAAACGTGTTCTTTTTCTGGACCGT-----------------AAGTTATCAGATTGG
i caeJap4.Scaffold4951 C 0 C 0

a score=-4449.000000
s ce10.chrX             2229027 35 + 17718866 ---CAATTTTTTTCAAGGGAGTTTTTGTTTATTCGAAT
s caeRem4.Crem_Contig0  4450689 27 +  4500979 -----------TATCTGATTATATAGATTCATTCGAAT
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold576     3967 32 -   128984 ---TAattaaacttttgaatttgttcATTTA---AGAA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2962153 35 -  4147112 ---TAAGTTTCTTTCAGGagtttttgattcattcagag
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   120243 28 +   152553 ATTGGATTCCGTTGAAgactttttttgt----------
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13701691 38 - 21540570 I

a score=149626.000000
s ce10.chrX             2229062 580 + 17718866  
s cb4.chrX             13701729 592 - 21540570  
i cb4.chrX             I 38 I 42
s caeRem4.Crem_Contig0  4450716 556 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 5
s caeSp111.Scaffold576     3999 568 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2962188 585 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   120271 553 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-6140.000000
s ce10.chrX             2229642 16 + 17718866 AAATATAAAG------------CATGTA----
s caeRem4.Crem_Contig0  4451277 18 +  4500979 ATAATCAAAAGAATTATC--------------
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold576     4567 28 -   128984 ATAAATAAATGAGCAATCAGAGCATTTA----
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2962773 16 -  4147112 AAAACTAAAT------------CATACA----
i caePb3.Scfld02_0     C 0 I 117
s caeJap4.Scaffold4951   120824 16 +   152553 ----------------TACTGACATgcaagct
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13702321 42 - 21540570 I

a score=-5009.000000
s ce10.chrX             2229658 28 + 17718866 CT-----TAAATGTTTTGGCTCGAGCTACTTCT
s caeRem4.Crem_Contig0  4451295 29 +  4500979 -TCCAAATGTAAGCCTAGCTGATGACTAGC---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576     4595 26 -   128984 -------CGAAAACATTGGAGAGAAttgatttt
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951   120840 10 +   152553 tt-----taaaaatt------------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2962789 117 -  4147112 I
e cb4.chrX             13702321 42 - 21540570 I

a score=-11235.000000
s ce10.chrX             2229686 38 + 17718866 TCAGATAATTGAATTG--------------AACGATTACAATTCAAGAATAA
s cb4.chrX             13702363 27 - 21540570 -TCAGGAGCTAAAATT------------CTAGCGAtca------------aa
i cb4.chrX             I 42 I 18
s caeRem4.Crem_Contig0  4451324 44 +  4500979 CTAGATGACTAAACTTTCTATTCATCCACTACaggtcat--------ctgaa
i caeRem4.Crem_Contig0 C 0 I 29
s caeSp111.Scaffold576     4621 28 -   128984 ----ggtttttgacaT------------CTAGTGATTAT--------AGTAA
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951   120850 24 +   152553 ---aacaattGAAGTT------------TTGGGCTCTTT-------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2962789 117 -  4147112 I

a score=345007.000000
s ce10.chrX             2229724 566 + 17718866  
s cb4.chrX             13702408 600 - 21540570  
i cb4.chrX             I 18 C 0
s caeRem4.Crem_Contig0  4451397 559 +  4500979  
i caeRem4.Crem_Contig0 I 29 C 0
s caeSp111.Scaffold576     4649 542 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2962906 553 -  4147112  
i caePb3.Scfld02_0     I 117 C 0
s caeJap4.Scaffold4951   120874 589 +   152553  
i caeJap4.Scaffold4951 C 0 I 111

a score=-611.000000
s ce10.chrX             2230290  9 + 17718866 TGGTTG--------AAA
s cb4.chrX             13703008 17 - 21540570 Tggctatatttttgaat
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4451956 12 +  4500979 TAGACA-----TTGAAa
i caeRem4.Crem_Contig0 C 0 I 420
s caeSp111.Scaffold576     5191  9 -   128984 Tagata--------aaa
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2963459  9 -  4147112 tggaag--------aag
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   121463 111 +   152553 I

a score=-5102.000000
s ce10.chrX             2230299 37 + 17718866 AAT-------------GCTAAGTTGAGTTTGAACTTGCAATAACAGTGAA
s cb4.chrX             13703025 50 - 21540570 aatgttTAGGTTGGGTACAAGGAGAACTGGGAAGtgaaaataatcgaaaa
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold576     5200  9 -   128984 ----------------a-------------------------attgtaaa
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2963468 24 -  4147112 ----------------agaaagtgaat----------AGTTTACGATAAA
i caePb3.Scfld02_0     C 0 I 656
e caeJap4.Scaffold4951   121463 111 +   152553 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-2067.000000
s ce10.chrX             2230336 40 + 17718866 ------------------------GCTC----TTGAGCTTAAACT-----TGAAAATAT--AGAGAAACGGTATT-------
s cb4.chrX             13703075 78 - 21540570 ctATCTGGGTGACGATGTAGGAAtatttaaaactga----aaactcagaatcaaaatattatgataaactggaaagtgtgtg
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold576     5209 36 -   128984 ------------------------gTTT----CAGA----AGACT-----TTGAAATAT--GGAGGAACTGGATT-------
i caeSp111.Scaffold576 C 0 I 364
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeJap4.Scaffold4951   121463 111 +   152553 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-741.000000
s ce10.chrX             2230376 19 + 17718866 TGTGTA-GTA-----------------------------TACCAGCACA
s cb4.chrX             13703153 49 - 21540570 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatTACTGACAAA
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeJap4.Scaffold4951   121463 111 +   152553 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-12263.000000
s ce10.chrX             2230395 293 + 17718866 GAATTATCAAATTTAC--CATTTTGAACATTT----TACGTGACGTTTTTATCTATAGTTTTAGGCTTAA--AATTAGTGTTTCTCTAAGCCAAGGAATACAAATCAATTT-CACTTAAATTATCCATATAATTGATAT--------AATT----GGAA----AACAAATTGGAAAA----TAT-TTTTCGGC---TAGGCACACTACAC------AAGTACTTATAAAAA---------------------TGATGGAA--------------------------------------------A--TAAAATATTTAGCCTACAAG---ACTGA-AGAATTTAGAAAACTTTTTAAAAAAAATCTAAGCAAGCTTGATTTTATAAAATTCGTGATTTTATAA
s cb4.chrX             13703202 350 - 21540570 GGATTGTT---TTTACAGCAATCCAGAAAGTTACAATACAAAAC-TTTGTatct------------------------tgttttcaaaaattgataattatgaaacattttatttttatagtaACCCTGTTTTTGGGAT--------AATTTTCCAGAGTTGTATCTTGttgaaaaa----catatttttgtt---ttcgatcATCACATGGAATGGGGTACTATCAAAAATTCtatataccgtatttgcttTAATGAAATCACACTTTGTTtgcgcactttgagctcaattatctcattttgcA--TAAAATATACCGgcaatatgtcaactgataaaatgtaggtgatattgaaacgaaaattttatcag--ttgact------aatttttgatatcgcta
i cb4.chrX             C 0 C 0
s caeJap4.Scaffold4951   121574 287 +   152553 GGAGTGtcgtttttac--------aaaaaact-------gTTAAATATGTATGTCCCGCTCAAAGTTTTATTCATTTCcgtttttc----------------aatcgattt-ttttcaaagttacGCTG-ACTTGGCATTTCGCGCGAATTTTAAAGAG--------------AAAATgcccat-tttttgataaactGGTATTTCccgc---------gatttttaaaaa---taaatgtcacgaaaaattcaataaaa--------------------------------------------aacgaaaatgtacaag-agtacg-----tga-aaaaCAGCacaaattttgcaaataagttttaaacaa--tttatgttt---tttttttgtggttatAA
i caeJap4.Scaffold4951 I 111 I 49
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-301.000000
s ce10.chrX             2230688 55 + 17718866 AC----------GTATATTAGCGTAATTTATAACCA---GAAAATAAGGAAAAAAAAACAAATTCT-------AA
s cb4.chrX             13703552 75 - 21540570 acagaaaatgaaataaattaGTTTAAAGTGTGAGCATAGGGATATGAACTAACATAACTAAATCTTTTCTTGCAA
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeJap4.Scaffold4951   121861 49 +   152553 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-4214.000000
s ce10.chrX             2230743 143 + 17718866 TAATTAAATCTAGTCGGTGTTCAG------GAAATAT-------------------------------GAAATACAAACGCCGTAAGAATTTCAATTTTCG----TGCTAAATATTTAAGTTTCCCAG-----CGAAACG--------TTTAAAAAAATGTTTGGAAATTTTTGG----TTTTTGTCCAAAA-AATGGTCAT
s cb4.chrX             13703627 174 - 21540570 CAATCGAGTCTATTTAACAGTCAATTGAACGAAATTCGTTT---------------TTAgtctttttagaaaaaaaaaacctgttattttttcagaatctgaaaatgttagcTAATT---TCTTCCAatccttcaaaatgaatttgaatttgaaacattATTT---AACTCCTG------TTTTGTCAAACA-GAAGTTCAT
i cb4.chrX             C 0 I 20
s caeJap4.Scaffold4951   121910 152 +   152553 CAAATGAATATTTTCGTATATCAg------gaattttattttgaatgttaaccttattatttattttcaaaaaaaaaa-----------ttttttttttcc----ttttaatta------tgtaacaa-----caa--------------caaaaaattattt----atttttgataatttttagcCGGAAACAACGCACAT
i caeJap4.Scaffold4951 I 49 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-574.000000
s ce10.chrX             2230886 22 + 17718866 AATTAT----GAAACTC-AAT---------CGCGTT
s caeJap4.Scaffold4951   122062 36 +   152553 ATGTACCCTAGAAACTCTAATataacggcatgccct
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e cb4.chrX             13703801 20 - 21540570 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=1577.000000
s ce10.chrX             2230908 9 + 17718866 TCAATTGTT
s cb4.chrX             13703821 9 - 21540570 tcaattatc
i cb4.chrX             I 20 C 0
s caeJap4.Scaffold4951   122098 9 +   152553 tctattgtt
i caeJap4.Scaffold4951 C 0 I 63
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=319.000000
s ce10.chrX             2230917 7 + 17718866 CTTATTC
s cb4.chrX             13703830 7 - 21540570 ttgattc
i cb4.chrX             C 0 I 79
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeJap4.Scaffold4951   122107 63 +   152553 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=0.000000
s ce10.chrX             2230924 55 + 17718866 TTAAATTCTAGATACTCCTCCAACATTTATCTAGTTAGTCCAATTTTTTCTGGAA
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeJap4.Scaffold4951   122107 63 +   152553 I
e cb4.chrX             13703837 79 - 21540570 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=84.000000
s ce10.chrX             2230979 18 + 17718866 AACTGGGAAACTCTTGAA
s caeJap4.Scaffold4951   122170 18 +   152553 AACCAAGTAAGCATGAGa
i caeJap4.Scaffold4951 I 63 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e cb4.chrX             13703837 79 - 21540570 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=-10567.000000
s ce10.chrX             2230997 245 + 17718866 TGAA--AACTTTGAAAAAAAAATCTAAAAATTTCAGG--GTTATGTTATT-TATTCAGTAAATTTAGGCTATTCACACAAACAAAGTAG----TTTTAACATAGTTTAAAAAGTATACAAAAAGCCTGTTGTTAAGCATTTGGA-----TATAATTTTTTCAAATTTTTTTTCAAAGGAAAACGATAAAAAT----------------AAACATAAA---------TATTTTCTTCAAAATATTGCAATAGTAGGAATGCT-CGCGCATTGGCTATAAAGAATAT--------------------------------------------
s cb4.chrX             13703916 201 - 21540570 TGAC--ATCTTT--AGCATGAATCTAAATA---------ATTATACTTTTATGTTCGGTTGGCTTAGAGTAAATACGTAAGC----TGA----Ttgttagaaaatt--agaaattcccagaaaatt-----------------------tataatttgtTCAACTACTGATAGTTCGAAACAAGTTACgaat----------------------------------catttttcattaaattttatAAC----GAACCGTTCCATACACAAGCAACTAAATGTGt--------------------------------------------
i cb4.chrX             I 79 I 3
s caeJap4.Scaffold4951   122188 298 +   152553 tgaccgaagtttggtgtgcaaatctcgaaatacccggcagttgtgatg---aaattaGCAATTGAGGAGCATAT------------TAGAGTTTTACGGTATAATTt-aga-----ccaaaaaattgtttatcttttattttaataaattacttttttttcaagttctcAATGTTTGGAac---ttaaaaaatcaaagaaactggagaaaaaaaaaacaattttgtaattttctagaaaattcctcaaa----gggttaat---cacattttcaataaaaaaaataattgaaaaattatatttcaaTTCTCCTTATAAACAGTTTCTAT
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2963492 656 -  4147112 I
e caeSp111.Scaffold576     5245 364 -   128984 I
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=2663.000000
s ce10.chrX             2231242 6 + 17718866 AAAACG
s cb4.chrX             13704120 6 - 21540570 aaaaaa
i cb4.chrX             I 3 C 0
s caeSp111.Scaffold576     5609 6 -   128984 AGAACG
i caeSp111.Scaffold576 I 364 C 0
s caePb3.Scfld02_0      2964148 6 -  4147112 aaaaca
i caePb3.Scfld02_0     I 656 C 0
s caeJap4.Scaffold4951   122486 6 +   152553 CAAACA
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4451968 420 +  4500979 I

a score=215639.000000
s ce10.chrX             2231248 856 + 17718866  
s cb4.chrX             13704126 822 - 21540570  
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0  4452388 934 +  4500979  
i caeRem4.Crem_Contig0 I 420 I 31
s caeSp111.Scaffold576     5615 852 -   128984  
i caeSp111.Scaffold576 C 0 I 2
s caePb3.Scfld02_0      2964154 908 -  4147112  
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951   122492 920 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-2505.000000
s ce10.chrX             2232104 3 + 17718866 -GGA
s cb4.chrX             13704949 2 - 21540570 -GA-
i cb4.chrX             I 1 C 0
s caeSp111.Scaffold576     6469 2 -   128984 -gt-
i caeSp111.Scaffold576 I 2 I 27
s caePb3.Scfld02_0      2965064 2 -  4147112 -tg-
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold4951   123412 3 +   152553 taa-
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4453322 31 +  4500979 I

a score=-7743.000000
s ce10.chrX             2232107 35 + 17718866 -GGAAGTAGGTTTTCACA---------------CACTTAAAACATCCGGTT---------
s cb4.chrX             13704951 41 - 21540570 ---AGTAAAGTTTTTCCGTCTTTTCT-------AAACTTGACCACATGTTC---------
i cb4.chrX             C 0 I 13
s caePb3.Scfld02_0      2965066 25 -  4147112 --------agATTTCACG------------------ATAGACGAAACACTA---------
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold4951   123415 60 +   152553 gTAGTGTTAGTTTTCTTGTTATTTCTTGTTTCATATTGAAGGCGCATGGTAAACAAAAAC
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576     6471 27 -   128984 I
e caeRem4.Crem_Contig0  4453322 31 +  4500979 I

a score=910.000000
s ce10.chrX             2232142 1 + 17718866 A
s cb4.chrX             13705005 1 - 21540570 A
i cb4.chrX             I 13 C 0
s caeSp111.Scaffold576     6498 1 -   128984 a
i caeSp111.Scaffold576 I 27 C 0
s caePb3.Scfld02_0      2965094 1 -  4147112 A
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold4951   123475 1 +   152553 A
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4453322 31 +  4500979 I

a score=110635.000000
s ce10.chrX             2232143 159 + 17718866 TGACCT--TCTTGCTC-GCGACCATTTGAGGTGACA-GAAGGATGAGTGAAAATG--GAA-TTTAGATAAAAATCTGACTCTGACATTAACCA-----ATGAATAATCGTTTCAAACAACAGGTGGCATAATTATTCGAGTAT-------ACC-ATACTCACTTTCATTTC----------AGGTTTTT
s cb4.chrX             13705006 168 - 21540570 TGACCTTCTCTTGCTC-ATGCCCATTTGAGGTGACAGGGGAGATGAGTGAAAATG--GGAATCAagataaaaatctgaatctgACATCAACCCACCGTAtgaataattgttttcaaCAACAGGTGGCATAATTGACAGGCACC-------ACGTTTACTCACTTT-GTGGG----------AGCttttt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4453353 156 +  4500979 TGACCT--TCTTGCTC-ACATCCATTTGAGGTGGCA--GGAGATGAGTGAGAATG--GAA---TAgataaaaatctgaatctgaCATTAACCA-----gtgaataattgttttgaacAACAGGTGGCATAATTGACAGAGACT-------ACG-TTACTCACTTTCATTTG----------GGTTTTTT
i caeRem4.Crem_Contig0 I 31 C 0
s caeSp111.Scaffold576     6499 148 -   128984 tgaccT--TCTTGCTCTCAAACCATTCGAGGTGACA-GGGAGATGAGTGAAAATG--GGA---TAGATAATAA------TCTGACTTCAACCA-----ATGAATAATGGTTTTGAACAACAGGTGGCATAATTGACAGGTTTT-------ACG-AAACTCACTTTcgtt--------------atttgt
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2965095 159 -  4147112 TGACCT--TCTTGCTC-AAAACCATTTGAGGTGACA-GGAGGATGggtgaaaatggtgaa---aagataaaaatctgAGTCTGACATTAACCG-----ATGAATAATAGTTTAGAACAACAGGTGGCATAATTGACAGAGTCA-------ATG-TTACTCACTTtcatttc----------gagttttt
i caePb3.Scfld02_0     C 0 I 5472
s caeJap4.Scaffold4951   123476 166 +   152553 TGACCT--TCTTGCTC-G--------CGAGGTGGCA---TAAATGAGTGAAAATG--GAA-TATAGATAAAAATCTGAATCTGACACATGCCG-----ATGAATAATTGTTTTGAACAACAGGTGGCATAATTGACAGAGACTCGGATAGGCA-TTGGTCACTTTCACTTGCTATTAGCTTAAACTTtc
i caeJap4.Scaffold4951 C 0 C 0

a score=-1656.000000
s ce10.chrX             2232302 5 + 17718866 GTTTT
s cb4.chrX             13705174 2 - 21540570 ---tt
i cb4.chrX             C 0 I 4989
s caeRem4.Crem_Contig0  4453509 2 +  4500979 ---CA
i caeRem4.Crem_Contig0 C 0 I 18
s caeSp111.Scaffold576     6647 5 -   128984 ttttt
i caeSp111.Scaffold576 C 0 I 14
s caeJap4.Scaffold4951   123642 4 +   152553 attt-
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2965254 5472 -  4147112 I

a score=63.000000
s ce10.chrX             2232307 20 + 17718866 CTAG-AATGATTTATGATAAA
s caeRem4.Crem_Contig0  4453529 20 +  4500979 CATG-ATTTATTTACTATAGA
i caeRem4.Crem_Contig0 I 18 I 3345
s caeSp111.Scaffold576     6666 21 -   128984 CATGAAACGGTTTGAAACGGA
i caeSp111.Scaffold576 I 14 C 0
s caeJap4.Scaffold4951   123646 16 +   152553 -----ggtgacgaaaaatGAA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e cb4.chrX             13705176 4989 - 21540570 I

a score=-1151.000000
s ce10.chrX             2232327 58 + 17718866 ATGTGAACTAACAGGAAAACCTTT-----TACCGTAAAA------TTTACACT-TATT--TTTTTCGAAA------TT
s caeSp111.Scaffold576     6687 77 -   128984 TTATGAATAGAAATCAACATTGTTGCAGATAGCGTATCATCAGtttttgccct-ttttcgtttttcaaaatatttttt
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951   123662 60 +   152553 TTGTTAAATACCTGAAAAATTAAGGTG--TACTGTAA--------TTTATACCGTAtt--tttttCCGGA------TT
i caeJap4.Scaffold4951 C 0 I 6703
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e cb4.chrX             13705176 4989 - 21540570 I
e caeRem4.Crem_Contig0  4453549 3345 +  4500979 I

a score=900.000000
s ce10.chrX             2232385 17 + 17718866 CAATATGACCTGAAAAA
s caeSp111.Scaffold576     6764 17 -   128984 tactatcatctgaaaaa
i caeSp111.Scaffold576 C 0 I 3039
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e caeJap4.Scaffold4951   123722 6703 +   152553 I
e cb4.chrX             13705176 4989 - 21540570 I
e caeRem4.Crem_Contig0  4453549 3345 +  4500979 I

a score=0.000000
s ce10.chrX             2232402 872 + 17718866  
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e caeJap4.Scaffold4951   123722 6703 +   152553 I
e cb4.chrX             13705176 4989 - 21540570 I
e caeSp111.Scaffold576     6781 3039 -   128984 I
e caeRem4.Crem_Contig0  4453549 3345 +  4500979 I

a score=701.000000
s ce10.chrX             2233274 67 + 17718866 CAGCTGATGTCTGAATCCGTTCCCGTCAATT----AAATGCAAATAACT--GCATTGTGAAAATTAAGTAATT
s caeJap4.Scaffold4951    31922 71 -   152553 CAATTTATGACTGa--ccatttcatttcatttcaaaaatgcaCTTCATTTTATATGGTTCAAATTAATTCCTT
i caeJap4.Scaffold4951 n 6703 C 0
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e cb4.chrX             13705176 4989 - 21540570 I
e caeSp111.Scaffold576     6781 3039 -   128984 I
e caeRem4.Crem_Contig0  4453549 3345 +  4500979 I

a score=-52.000000
s ce10.chrX             2233341 7 + 17718866 TTGTTTA
s caeRem4.Crem_Contig0    49959 7 -  4500979 TCATTTC
i caeRem4.Crem_Contig0 n 3345 C 0
s caeSp111.Scaffold576   124681 7 +   128984 TCGTTTC
i caeSp111.Scaffold576 n 3039 C 0
s caeJap4.Scaffold4951    31993 4 -   152553 TTGC---
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2965254 5472 -  4147112 I
e cb4.chrX             13705176 4989 - 21540570 I

a score=84932.000000
s ce10.chrX             2233348 147 + 17718866 AGCTTCTCGAGGCTTTGCTGAAAATTGACTCGAGGAAGAAGTTGTCCAAATTCGAAACATTGCACATGGTTCAGAATCATCTTGAATGCCTGTCACAGATTTTGACACAAGACTCCAAAAGTGAGAAT---CTCAAAAGCAAATCCGAAT
s caeRem4.Crem_Contig0    49966 147 -  4500979 AGCTTCGCGAAGTCTTGCCGGAAATCGACTCGGGGAAGAAGCTTTCGAAATTCGAGACGCTGCAAATGGCTCAGAAATACATCGAATGCTTGGCCcagattctcaaaaaagatGCAAAGCACGAGAAC---AACAAGAACAAATCCGGAT
i caeRem4.Crem_Contig0 C 0 n 0
s caeSp111.Scaffold576   124688 147 +   128984 AGCTTCGTGAGGTTCTACCGGAAATCGACTCGGGAAAGAAATTGTCCAAATTTGAAACGTTGCAAATGGCTCAGAAATATATTGAATGTTTGGCACAAATTCTAAAACAGGACTCCAAAAGCGataat---ctcaaaaacaaatccggat
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      1184609 147 +  4147112 AGCTCCGTGAGGTTCTTCCGGAAATTGACTCGGGAAAGAAGCTGTCCAAATTTGAGACACTGCAAATGGCTCAGAAGTACATCGAATGTTTGGCCCAGATTCTGAAACAGGACCCGAAAACcgagaaa---ctcaaaaataaatccaACT
i caePb3.Scfld02_0     n 5472 C 0
s caeJap4.Scaffold4951    31997 150 -   152553 AGCTTCGGATGGTGTTACCGGAAATCGACTCAGGGAAGAAGCTTTCAAAGTTTGAAACACTACAGATGGCTCAGAAGTATATTGAATGTTTAGCTCAGATACTCAAACAAGATTCCAAAAttgacaacaaaaacaaaaataaatccGGAT
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13705176 4989 - 21540570 I

a score=-2139.000000
s ce10.chrX             2233495 27 + 17718866 TATCAGT----TATGCGAAATTTTCCTCAAA
s caeSp111.Scaffold576   124835 30 +   128984 gatttctttt-tcttaaacatctttttttca
i caeSp111.Scaffold576 C 0 n 0
s caePb3.Scfld02_0      1184756 31 +  4147112 GAGTACTGTGATGTTTGATAGCTTTTTTAGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    32147 27 -   152553 GATTGAA----TATTCAACTTTATTATTTAT
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13705176 4989 - 21540570 I
e caeRem4.Crem_Contig0    50113  0 -  4500979 I

a score=376.000000
s ce10.chrX             2233522 43 + 17718866 ATGG--------CCCTGCACCTTTCCAGTTTGAACTCTCTTTTTTTTCATA
s caePb3.Scfld02_0      1184787 35 +  4147112 ATGG------------GTACTTTGtcattt----ccttattttttttctaa
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    32174 51 -   152553 ATGGGTATTATTGCTTGCACCATTCCTCAACTATCCCCATACCTTTTCATA
i caeJap4.Scaffold4951 C 0 T 24356
e cb4.chrX             13705176 4989 - 21540570 I
e caeSp111.Scaffold576   124865  0 +   128984 I
e caeRem4.Crem_Contig0    50113  0 -  4500979 I

a score=202.000000
s ce10.chrX             2233565 9 + 17718866 GGTTTCAAT
s caePb3.Scfld02_0      1184822 9 +  4147112 tctttcCAT
i caePb3.Scfld02_0     C 0 n 0
e caeJap4.Scaffold4951    32225 24356 -   152553 T
e cb4.chrX             13705176 4989 - 21540570 I
e caeSp111.Scaffold576   124865 0 +   128984 I
e caeRem4.Crem_Contig0    50113 0 -  4500979 I

a score=0.000000
s ce10.chrX             2233574 3922 + 17718866  
e caePb3.Scfld02_0      1184831    0 +  4147112 n
e caeJap4.Scaffold4951    32225 24356 -   152553 T
e cb4.chrX             13705176 4989 - 21540570 I
e caeSp111.Scaffold576   124865    0 +   128984 I
e caeRem4.Crem_Contig0    50113    0 -  4500979 I

a score=521.000000
s ce10.chrX             2237496 17 + 17718866 TTTTACTCAATCCATTT
s cb4.chrX             13710165 16 - 21540570 TTTTCCTCGTTCCATT-
i cb4.chrX             I 4989 C 0
e caePb3.Scfld02_0      1184831  0 +  4147112 I
e caeJap4.Scaffold4951    32225 24356 -   152553 T
e caeSp111.Scaffold576   124865  0 +   128984 I
e caeRem4.Crem_Contig0    50113  0 -  4500979 I

a score=683.000000
s ce10.chrX             2237513 6 + 17718866 CCCGTG
s cb4.chrX             13710181 4 - 21540570 --CGTT
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2970726 6 -  4147112 CCCGTC
i caePb3.Scfld02_0     I 5472 C 0
e caeJap4.Scaffold4951    32225 24356 -   152553 T
e caeSp111.Scaffold576   124865 0 +   128984 I
e caeRem4.Crem_Contig0    50113 0 -  4500979 I

a score=-1696.000000
s ce10.chrX             2237519 20 + 17718866 TTTCATC------------TCCCCGAAAAATA
s cb4.chrX             13710185 28 - 21540570 TTTCTCCTAAAATCGTCCGTCCTCAACA----
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      2970732 12 -  4147112 CTCTTTC------------TCCCC--------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   130425 20 +   152553 tttttcc------------ttccctgaatagg
i caeJap4.Scaffold4951 I 6703 C 0
e caeSp111.Scaffold576   124865  0 +   128984 I
e caeRem4.Crem_Contig0    50113  0 -  4500979 I

a score=-1224.000000
s ce10.chrX             2237539 5 + 17718866 TCCTA--
s caeRem4.Crem_Contig0  4456894 3 +  4500979 --TCC--
i caeRem4.Crem_Contig0 I 3345 I 2
s caePb3.Scfld02_0      2970744 5 -  4147112 TCTTC--
i caePb3.Scfld02_0     C 0 I 7
s caeJap4.Scaffold4951   130445 5 +   152553 --tccat
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13710213 0 - 21540570 C
e caeSp111.Scaffold576   124865 0 +   128984 I

a score=70665.000000
s ce10.chrX             2237544 461 + 17718866  
s cb4.chrX             13710213 448 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4456899 459 +  4500979  
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold576     9820 442 -   128984  
i caeSp111.Scaffold576 I 3039 C 0
s caePb3.Scfld02_0      2970756 450 -  4147112  
i caePb3.Scfld02_0     I 7 C 0
s caeJap4.Scaffold4951   130450 450 +   152553  
i caeJap4.Scaffold4951 C 0 I 28

a score=-4143.000000
s ce10.chrX             2238005 26 + 17718866 ACTTTGATTTTCCGATAATTTGTGCA
s cb4.chrX             13710661 18 - 21540570 GCCATCAACAACCTTTA--------T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4457358 26 +  4500979 gagaggaATAGTCCGTAAACTGAGGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    10262 26 -   128984 gaattaaaaaatcgataaattgctca
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2971206 26 -  4147112 aagtgaaattTATCACCAATTGCTGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   130900 28 +   152553 I

a score=386279.000000
s ce10.chrX             2238031 622 + 17718866  
s cb4.chrX             13710679 566 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4457384 570 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    10288 559 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2971232 564 -  4147112  
i caePb3.Scfld02_0     C 0 I 37
s caeJap4.Scaffold4951   130928 655 +   152553  
i caeJap4.Scaffold4951 I 28 C 0

a score=-14838.000000
s ce10.chrX             2238653 37 + 17718866 AGTTTAAGTTTGCAATTT-----------------TAATTTTA--TGAATTTAAAG
s cb4.chrX             13711245 33 - 21540570 ----GATAAGAGAGACCG-----------------TAACATCAGCCGAACGT--AG
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4457954 34 +  4500979 ----tttcatcatcatca------------------aactTTGGTTAaatcttcta
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold576    10847 32 -   128984 ------AGTTTGCTACCG------------------CGTATCAAATAAACTataaa
i caeSp111.Scaffold576 C 0 I 9
s caeJap4.Scaffold4951   131583 46 +   152553 -----AATAATgggatttttcttttcttttttttttaatattttctaaAAG-----
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2971796 37 -  4147112 I

a score=506671.000000
s ce10.chrX             2238690 504 + 17718866 TTTCAGACCAACGACTACATGAACACCACTGCTCGTTGCCTTCAGATGATGCTCCGTCACGATGAATACAGACATGAATTCGTTGATTCTGACGGAGTTCAGACTCTTGTCACTGCTCTCAATGGAAAGACCAACTTCCAGTTGCAATATCAACTTATCTTTGCTGTTTGGTGCCTCACTTTCAACGCCGACATTGCCAGAAAAGCTCCATCTCTTGGACTTATTCAAGCTCTCGGAGATATTCTTTCCGAGTCCACGAAGGAAAAGGTCATCAGAATCATTCTCGCTTCTTTCGTGAACATTTTGAGCAAGGTTGATGAGCGTGAAGTCAAGAGGGAGGCTGCTCTCCAGATGGTTCAATGCAAAACTTTGAAGACTTTGGAGCTGATGGATGCTAAGAAATACGACGACCCAGATCTTGAGGATGATGTCAAGTTCCTCACTGAAGAGCTGACCCTTTCAGTGCACGACTTGAGCTCCTACGATGAGTATTACAGCGAGGTA
s cb4.chrX             13711280 504 - 21540570 TTTCAGACGAACGAATACATGAACACCACTGCTCGTTGTCTCCAAATGATGCTCCGCCATGACGAGTACCGCCACGAGTTTGTCGTCACGGACGGAGTTCAGACTCTGGTAACAGCGCTTAACGGGAAGACGAATTTCCAACTCCAGTACCAACTCATCTTCTCTGTCTGGTGCCTCACCTTCAACGCCGACATCGCCAAGAAAACTCCATCGCTTGGGGTCATCACTGCACTTGGAGACATCCTTTCAGAGTCGACAAAGGAAAAAGTCATTCGAATTATTCTGGCATCCTTTGTCAACATTCTCAACAAGGTCGAGGAGCGTGAGATTAAGCGAGAGGCTGCCCTTCAAATGGTTCAGTGCAAGACTCTCAAGACTTTAGAATTAATGGATGCCAAGAAGTACGACGATCCAGATCTCGAGGATGACGTGAAGTTCCTGACTGAGGAATTAACCCTCTCCGTACATGACTTGAGCTCCTACGATGAATATTACAGTGAAGTG
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  4457990 504 +  4500979 ttccagaCAAACGACTACATGAACACCACCGCCCGTTGTCTCCAAATGATGCTCCGCCATGACGAGTACAGACATGAGTTCGTGGATTCTGATGGTGTACAGACGCTTGTGACAGCTCTCAACGGAAAGACCAACTTCCAATTACAATACCAATTGATCTTCTCCGTCTGGTGTCTCACTTTCAATGCCGAAATTGCTAAGAAAGCACCATCCCTTGGAATCATCACTGCTCTTGGAGATATTCTCTCGGAATCCACAAAAGAGAAAGTTATTAGAATCATTCTCGCTTCCTTCGTCAACATCTTGAACAAAGTCGAGGAACGTGAAATCAAAAGAGAAGCTGCCCTCCAGATGGTCCAATGCAAAACTCTCAAAACGTTGGAGCTAATGGATGCTAAGAAATATGACGATCCAGATCTTGAGGATGATGTCAAGTTTCTGACTGAGGAATTGACTGTTTCAGTTCATGACTTGAGTTCTTACGACGAGTATTACAGTGAGGTA
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold576    10888 504 -   128984 tttcagacaaatgACTACATGAACACTACTGCCCGTTGTCTTCAAATGATGCTTCGTCATGATGATTATAGACATGAATTTGTGAATGCTGAGGGTGTTCAAACATTAGTTCATGCTCTCAACGGAAAGACCAACTTCCAGCTGCAGTATCAGCTTATTTTTGCCGTTTGGTGTCTTACATTCAACACTGACATTGCCAAAAGAGCTCCGTCGCTTGGAGTTATTCAAGCCCTCGGAGACATCCTTTCTGAGTCaaccaaagaaaaagttatcagaatTATTCTTGCCACTTTTGTCAACATTCTGAATAAGGTCGAGGAGCGTGAGATCAAAAGAGAAGCTGCTCTTCAAATGGTTCAATGCAAAACTCTCAAGACTTTAGAGCTAATGGATGCTAAGAAATATGATGATCCAGATGTTGAAGAGGATGTGAAGTTCCTCACTGAAGAATTGACTCTTTCTGTTCATGATTTAAGTTCTTATGATGAATATTACAGTGAGGTA
i caeSp111.Scaffold576 I 9 C 0
s caePb3.Scfld02_0      2971833 504 -  4147112 tttcagaccaacgATTACATGAACACCACTGCCCGTTGTCTCCAAATGATGCTCCGTCACGACGAATACAGACATGAATTCGTTGATTCTGACGGTGTCCAAACTCTTGTGAATGCTCTCAACGGAAAGACCAACTTCCAATTGCAGTATCAACTCATTTTCGCCGTCTGGTGCCTCACATTCAATGCCAATATTGCCAAGAGAGCTCCATCTCTTGGAATCATTCAAGCTTTAGGAGATATTCTTTCCGAGTCTACCAAAGAAAAAGTCATCAGAATTATTCTTGCCACATTTGttaacattttgaacaagGTCGAGGAGCGTGAGATCAAAAGAGAAGCTGCTCTTCAGATGGTTCAGTGCAAAACTCTCAAAACTATGGAACTGATGGATGCCAAAAAGTACGACGACCCAGATGTTGAAGAGGATGTCAAGTTCCTCACAGAAGAGTTGACACTGTCTGTTCATGACTTGAGTTCGTATGACGAGTACTACAGTGAGGTA
i caePb3.Scfld02_0     I 37 C 0
s caeJap4.Scaffold4951   131629 504 +   152553 TTTCAGACTAACGAGTACATGAACACCACCGCTCGTTGTCTCCAGATGATGCTCCGTCACGACGAGTACAGACATGAATTTGTTGACAATGACGGTGTCCAAGCCTTGGTGACTGCTCTTAACGGAAAGACCAACTTCCAGCTGCAATACCAGCTCATCTTCGCCGTTTGGTGCCTCACTTTCAACGCTGATATTGCCCGAAGAGCTCCATCGCTCGGTATTATTCAAGCTCTCGGAGATATCCTTTCCGAGTCTACGAAAGAAAAGGTCATCAGAATTATCCTCGCTTCGTTTGTCAACATTTTGAACAAGGTCGATGAGCGAGAAATCAAGAGAGAAGCTGCTCTTCAGATGGTTCAGTGCAAAACCCTCAAGACTTTGGAGCTGATGGACGCCAAGAAGTACGACGATCCGGATCTCGAGGATGACGTAAAGTTCCTCAACGACGAATTGACGCTGTCGGTGCACGATTTAAGCTCTTATGACGAGTACTATAGCGAGGTG
i caeJap4.Scaffold4951 C 0 C 0

a score=-1635.000000
s ce10.chrX             2239194 5 + 17718866 AATCT
s cb4.chrX             13711784 5 - 21540570 AGTTT
i cb4.chrX             C 0 I 13
s caeRem4.Crem_Contig0  4458494 3 +  4500979 TGT--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11392 4 -   128984 TGTT-
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2972337 5 -  4147112 TGTTT
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951   132133 0 +   152553 C

a score=0.000000
s ce10.chrX             2239199 1 + 17718866 A
e caePb3.Scfld02_0      2972342 1 -  4147112 I
e caeJap4.Scaffold4951   132133 0 +   152553 C
e cb4.chrX             13711789 13 - 21540570 I
e caeSp111.Scaffold576    11396 0 -   128984 C
e caeRem4.Crem_Contig0  4458497 0 +  4500979 C

a score=-7121.000000
s ce10.chrX             2239200 102 + 17718866 AATCTCACCAAGACTtgcggatttgggagtcaggttcactgcctggtggtgctcccactgggctataatttgagccacgtcctagccaggaaccgtggccga
s caeRem4.Crem_Contig0  4458497  11 +  4500979 -----------------------------------------------------------------TACTTTTAACC--------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11396  18 -   128984 -------CCAAGA------------------------------------------------GTGAAGATATCA-----------------------------
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2972342   1 -  4147112 I
e caeJap4.Scaffold4951   132133   0 +   152553 C
e cb4.chrX             13711789  13 - 21540570 I

a score=0.000000
s ce10.chrX             2239302 13 + 17718866 taatccagtcgtg
e caePb3.Scfld02_0      2972342  1 -  4147112 I
e caeJap4.Scaffold4951   132133  0 +   152553 C
e cb4.chrX             13711789 13 - 21540570 I
e caeSp111.Scaffold576    11414  0 -   128984 C
e caeRem4.Crem_Contig0  4458508  0 +  4500979 C

a score=-2197.000000
s ce10.chrX             2239315 27 + 17718866 gattactgcacttctcaatagaagctg-
s caeRem4.Crem_Contig0  4458508  4 +  4500979 ------------------------CTGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11414  9 -   128984 ----------------AATAGAATC---
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2972342  1 -  4147112 I
e caeJap4.Scaffold4951   132133  0 +   152553 C
e cb4.chrX             13711789 13 - 21540570 I

a score=-12187.000000
s ce10.chrX             2239342 86 + 17718866 gccgaacctagggggtgaggccggacttgaactcgtgacctccagattgctagcgaccaccactaccgacttagctatcctgaccc
s caeRem4.Crem_Contig0  4458512 24 +  4500979 ------------------GTAAGGAC------------------------------------------ATCTAGTCAATTTACC--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11423  3 -   128984 -----------------------AAC------------------------------------------------------------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2972343 26 -  4147112 -------------------GCTGAACCGAA-------------------------------------GAATTGGTAGATGTC----
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold4951   132133  0 +   152553 C
e cb4.chrX             13711789 13 - 21540570 I

a score=929.000000
s ce10.chrX             2239428 30 + 17718866 cGGATAATAGTTTTCATTAAATTGCAGGTT
s cb4.chrX             13711802 27 - 21540570 CAGAGAATAG---TATCAAACTTTCAGGTC
i cb4.chrX             I 13 C 0
s caeRem4.Crem_Contig0  4458536 11 +  4500979 -------------------ACTTCCAGGTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11426 15 -   128984 ---------------TTTCATTTACAGGTT
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2972369 17 -  4147112 -------------GTCTACATTTTCAGGTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951   132133  0 +   152553 C

a score=331010.000000
s ce10.chrX             2239458 626 + 17718866  
s cb4.chrX             13711829 576 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4458547 616 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    11441 614 -   128984  
i caeSp111.Scaffold576 C 0 I 3114
s caePb3.Scfld02_0      2972386 608 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951   132133 621 +   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=4915.000000
s ce10.chrX             2240084 122 + 17718866 CTGTACT-TTTTTAGTGATAAATTTCATCTAGTTTTTACCTTCTACCTACATGTTCATCTAGTT--ACTTATTTTTCT--------GCGATATACTATTTTTTGTTTTAGTGATGATACCTG------TTCAATTTTTC
s cb4.chrX             13712405 130 - 21540570 CTTCATTGTTTCTAGTGATATTTATAGCCTAGTCTC--ACCCCAACTAGcgtttttctattat-------ttttataattcacTTTGCAATTTGCCACTAATTCTTCTAgtgatgaattttttctttctttcatcGTTC
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  4459163 114 +  4500979 cttcat--tttttaGTGATATTTATACTCTAGT-------TATTACTAGCATTGTCATCTAGTT--ACCATTTTGTAA--------ACGATATgccaatattttttcttttgatgaaTACTG------CTCCATCGTTC
i caeRem4.Crem_Contig0 C 0 I 2
s caePb3.Scfld02_0      2972994 102 -  4147112 ---CTTTGCTGTTAATGATATTTATTCATTAGT-----TCTCCAGTTAGCTAATTTGTCCACT-----------------------GTGACTATTTATTTCTCCTTCTAGCGATGAttacta------tttcatttttc
i caePb3.Scfld02_0     C 0 I 3984
s caeJap4.Scaffold4951   132754 122 +   152553 ctgtaTT-ACTTTAGTGAC-CCTATGTTGAAATCTTTTAGCTCTACCAACATGTGCATCTAGTTTATTCCTATTGCCT--------GCGATATGCTAC-AGTTTTTCTAGTGATGATTATTG------TCCGAAATCTT
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576    12055 3114 -   128984 I

a score=46.000000
s ce10.chrX             2240206 12 + 17718866 ACTTATTTGCAA
s cb4.chrX             13712537 12 - 21540570 ACTTCTTTgcaa
i cb4.chrX             I 2 I 5079
s caeRem4.Crem_Contig0  4459279 12 +  4500979 TCAACTTTGCAA
i caeRem4.Crem_Contig0 I 2 I 3835
s caeJap4.Scaffold4951   132876  9 +   152553 AAATACTTA---
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2973096 3984 -  4147112 I
e caeSp111.Scaffold576    12055 3114 -   128984 I

a score=820.000000
s ce10.chrX             2240218 55 + 17718866 CGCCCAATAAGTAAAGTTTTTGAATTTTTTTTCTTGAAAGTATAATTATGTATTT
s caeJap4.Scaffold4951   132885 51 +   152553 TACGCGATTCCttcaacttttatttttctttttttga----acaatgAAGTACTT
i caeJap4.Scaffold4951 C 0 I 14848
e caePb3.Scfld02_0      2973096 3984 -  4147112 I
e cb4.chrX             13712549 5079 - 21540570 I
e caeSp111.Scaffold576    12055 3114 -   128984 I
e caeRem4.Crem_Contig0  4459291 3835 +  4500979 I

a score=0.000000
s ce10.chrX             2240273 1531 + 17718866  
e caePb3.Scfld02_0      2973096 3984 -  4147112 I
e caeJap4.Scaffold4951   132936 14848 +   152553 I
e cb4.chrX             13712549 5079 - 21540570 I
e caeSp111.Scaffold576    12055 3114 -   128984 I
e caeRem4.Crem_Contig0  4459291 3835 +  4500979 I

a score=213.000000
s ce10.chrX             2241804 14 + 17718866 AAAAACATC---ATTTT
s caeJap4.Scaffold4951     7869 17 -   152553 aaaaacaaTTCGACTCT
i caeJap4.Scaffold4951 T 24356 C 0
e caePb3.Scfld02_0      2973096 3984 -  4147112 I
e cb4.chrX             13712549 5079 - 21540570 I
e caeSp111.Scaffold576    12055 3114 -   128984 I
e caeRem4.Crem_Contig0  4459291 3835 +  4500979 I

a score=546.000000
s ce10.chrX             2241818 2 + 17718866 TA
s cb4.chrX             13717628 2 - 21540570 TA
i cb4.chrX             I 5079 C 0
s caeJap4.Scaffold4951     7886 2 -   152553 TA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2973096 3984 -  4147112 I
e caeSp111.Scaffold576    12055 3114 -   128984 I
e caeRem4.Crem_Contig0  4459291 3835 +  4500979 I

a score=774562.000000
s ce10.chrX             2241820 860 + 17718866  
s cb4.chrX             13717630 854 - 21540570  
i cb4.chrX             C 0 I 28
s caeRem4.Crem_Contig0  4463126 859 +  4500979  
i caeRem4.Crem_Contig0 I 3835 I 6
s caeSp111.Scaffold576    15169 851 -   128984  
i caeSp111.Scaffold576 I 3114 I 1
s caePb3.Scfld02_0      2977080 885 -  4147112  
i caePb3.Scfld02_0     I 3984 I 1
s caeJap4.Scaffold4951     7888 817 -   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=-7611.000000
s ce10.chrX             2242680 22 + 17718866 AAATTTCTAACA---TCAGAGAATT
s caeRem4.Crem_Contig0  4463991  5 +  4500979 aaatt--------------------
i caeRem4.Crem_Contig0 I 6 I 2
s caeSp111.Scaffold576    16021  3 -   128984 acg----------------------
i caeSp111.Scaffold576 I 1 I 10
s caePb3.Scfld02_0      2977966 21 -  4147112 AAGTCCCTATca---tttatgttt-
i caePb3.Scfld02_0     I 1 I 16
s caeJap4.Scaffold4951     8705 24 -   152553 aaatttagatcCTATTTTGTAATT-
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13718484 28 - 21540570 I

a score=5159.000000
s ce10.chrX             2242702 316 + 17718866 ---------------------TCAAAGAAAA---ACCCAAAAAACTA-----------------------AAAATAAACAAACTAATAAAGGTTTTCCACCTAAAAATCAT----------------------CTTCTAACTA---ATAACCCTAAA-------TTAAAATAATCACTAACAAAAACGCGAATTAAATTATGAAAATCCATTGAACAAAGCTTTCGATTGAAAAAAGTT--CGAGTCATCCA-ATTGTAAA----GGGCCTAAAATTTAACAAGAAAAAAGGAAAGATCGGAAATTCTCCTGCAGAATA------------------CGAGAGGCAAAATGACTACGGTAACACT-CGTTTCTGGCTG---TGTGTC---CTGCCTGCACATCTAACTTTACGCTGGCAGAATGCCA
s cb4.chrX             13718512 321 - 21540570 ---------------------tcaaatcaaa---ac---aaaattta---ctagaacc-----------------aaaacatttttcaag---ctttggCCTAA--TCTCTAGTCAGAtt-------------tttttGCTGA---ACTAGCgtgaaaatgaactgaaaagaGTTCCT---GTAAATTTGGgagagaaattctgaagtgtCTCAAacgaaatg----ttgaaaaaaatt---aagcaATTGT-TCAATGAA----AGGCCCAAAATTTGACAAG-AAAAGGAGAGAATCGGAAATTCGACAGACAAATA---C----CCCCTGTGGGCAATAGG---------TACGGTAACACT-TGTTTTC--CTG---TGTGTCACAACGCCTGCGCATCTAAGTGCCGCCTGGCAGCGTGCCA
i cb4.chrX             I 28 C 0
s caeRem4.Crem_Contig0  4463998 340 +  4500979 ---------------------tgaagagaaaaatat---agagtttgtttttggaaccgatgaaaaaataaacaaaaaccactttttaaA-GCTTTTCGCCTAAATTTTCTATATAACTGCTGCA--------TTTTTGCCTA---GAAATCTTGAAATCTaacgaaaaa-----------attaatttgaatcaaaaac----aaGCA--TCATCtaaactt----tcgaaaataattttcaagtaattGT-CTCGAAAA----GGGCccaaaatttaacaca-aaaaagaaaagatcgGAAATTCGCCTGCAAAATA---CGACTCCCTT-----CAATAGG---------TACGGTAACAAT-GACATGCGGCCG---TGTGTT---TCGCCTGCACATCTAACTTCTTGTTGGCAGTGTGCCA
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold576    16034 291 -   128984 ---------------------aaaaataaat---aa---aaatattg-------------------------------aatgtTTCT--A---TTCCGGCCTAAACTTTTCT----ACTTCCCTAT-------TATttcatcattcaaatttattaa----atCTCAGAATATTC------TAAAATCTGTAAGAAAAGTAAGAATTTAACTAGttcaaacac----------aaaaac--agagtaatcga-aatgaaaa----aggcccaaaattcaacaag-aaaaaatagaggtcGGAAATTCGCCTGCAGAATG--------CATTT-----CGGTTGG---------TACGGTAACACT-CGTTTGC----TAGCTGTGTC-------CTGCACATCTAACTCCTTGCTGGCGGCTTGCCA
i caeSp111.Scaffold576 I 10 C 0
s caePb3.Scfld02_0      2978003 286 -  4147112 ---------------------caaaatcaaa---ac---aaaaattt-------------------------------cttttttctgag---ttttggcctgaaaattcctcaaaaaagcTCCGT-------CCTTTGATAA---AAAGTAGTTCAG--GAGCTGaaaaagtac------taataactgaaaaaatatccaaaacttg-------caaacat----ctgcaaaaaatc--cgACT--TCAATACTTGAAA----AGGCCCaaaattcaacaag-aaaaagaaaagattgagTGTTTGCCTGCAT--CC--------CTATT-----CGACGGG---------TACGGTAACACT-CGTTGAC----G---TGTGTC-------CTGCACATCTAACCCC---CTGGCAGCCTGCCA
i caePb3.Scfld02_0     I 16 C 0
s caeJap4.Scaffold4951     8729 329 -   152553 CCCAAAAATGAGCCAtacattttgaaataaa---aa---aaaatttg-------------------------------caatttttcaaa-----tctaCCTAAAAACGTCT-AAAACTTCTCACTGTATTCATTCTTGGTAC---AAACTAGTTAG-------ACaaaa-----------aacggttaaaatgaaaaagtgaactaaatctataacaaaagg----ctccaaaaGCTT--CGATCCATTAA-Tagaaaaatttgaggc---aaatccaacaag-aaaaaagaaagatcggaaattcgtttgcaaaacaaaaCGGCGCTAGT-----TGTTGAC---------TACGGTAACATTCCACTTTC--GCG---TGTGTG---TGACCTGCACATCTAACTTG-TGTTGGCCGTCTGCCA
i caeJap4.Scaffold4951 C 0 I 859

a score=4113.000000
s ce10.chrX             2243018 46 + 17718866 ACATCTCTCGCGTCATCTCGAGTCTCCCACTTCCAAGTGATATTTC
s cb4.chrX             13718833 45 - 21540570 AGTGCTCTCCT-TTGTCTGTATTCTCTTACATGTGCCCACTATTTC
i cb4.chrX             C 0 I 187
s caeRem4.Crem_Contig0  4464338 45 +  4500979 ACTGCCGTCGTGCTGTCTCGCTTCTCTCGT-TTTGCGTGCTATTTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    16325 41 -   128984 GCAACCCTCGCGCTGTCTGTTGTCTCTCTGGTTCACGTGC---T--
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2978289 44 -  4147112 ACTGCCCTCGCTTTCTCTGTTGTCTCCGACTTCTGCCTGCTATT--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     9058 859 -   152553 I

a score=-14234.000000
s ce10.chrX             2243064  92 + 17718866 CTTTGCAAACCCGGGGGTCTTTGCGTTTTTGGGC---CACACATACAAATTC-------------------------------GCTT---GGCAGATGGAAAGCAATCGAT------------------------------------------TAGAATCT-------------GTACAGGACA---------------------
s caeRem4.Crem_Contig0  4464383 201 +  4500979 GTGTGCGGGTCGCGAGGTTGCTTCGTTTTAGGCC---CA-ACGAAGCAGGTTTTGATGAGGAAACAGTATATTGATCGGGAACTATTAACACCAAGAAGATGGAATCTGGCAAGTTTTctatttgaataatttttaaataattttttttttgaaagaatcaGCCATGGAATTTCGAGTTCGTCAGTTTAAAATTCGGATGTAACA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    16366  90 -   128984 CTGTACCTATT---CGTTTGCCACATTTTAGGGC---CATACGCATCAATTCT------------------------------GCTT---Actaggaaagaaaaattcgat------------------------------------------aaggatcg-------------aaaaatgcca---------------------
i caeSp111.Scaffold576 C 0 I 23
s caePb3.Scfld02_0      2978333 125 -  4147112 CCGTGCGCATTGGGAGGTCGGCGCGTTTTAGGCCCCACATATATAATTATTCTTG----GGCGAta------------ggaaaacttgaaactaatcaaaaaaaatcagct--------tgtTGGAGAGA----------------------AAATGGTCG-------------GAATTCATCG---------------------
i caePb3.Scfld02_0     C 0 I 6
e caeJap4.Scaffold4951     9058 859 -   152553 I
e cb4.chrX             13718878 187 - 21540570 I

a score=-5668.000000
s ce10.chrX             2243156 23 + 17718866 ---------------------------------------TGTTTCCACGG---AGCCGCCGTTGA----------------
s caeRem4.Crem_Contig0  4464584 46 +  4500979 ------------------------AGAGAAACTCCGTTTTGTTTTCGACGATAACCCTGTTTTGATAGAA-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2978464 75 -  4147112 TGGTTTCACACTTTAAATAATgcataaaaaac------ttttttctgaataaaagtGAATTTTCACGGTAGATACGGGTGA
i caePb3.Scfld02_0     I 6 I 26
e caeJap4.Scaffold4951     9058 859 -   152553 I
e cb4.chrX             13718878 187 - 21540570 I
e caeSp111.Scaffold576    16456 23 -   128984 I

a score=-550.000000
s ce10.chrX             2243179  6 + 17718866 -TTTGGT-----
s caeRem4.Crem_Contig0  4464630 12 +  4500979 TTTACGAAAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    16479  6 -   128984 -ttgggT-----
i caeSp111.Scaffold576 I 23 C 0
s caePb3.Scfld02_0      2978565  6 -  4147112 -TTAGGT-----
i caePb3.Scfld02_0     I 26 C 0
e caeJap4.Scaffold4951     9058 859 -   152553 I
e cb4.chrX             13718878 187 - 21540570 I

a score=-68018.000000
s ce10.chrX             2243185 189 + 17718866 AAGACTTTGGGCCTGA---GCCATTATTAAATAAA------------TTTAG-----------------TTATCCGGACATTTTTTTAT---------------TGTA------------AAAAAACGGTATT------------------AAATGTGAAAAATTGAACAAA--------------AAAGGTCCAAAT---------------------------------CAGTAA------------GATATG-C-------AACAAAAAAGGTAAT-----GTAA------------------AAAGA------------------AATTGGAAT-----------GTGTTCAAATGA--------AAACGTTTTTGGAGC-----------AACAGAA----------------AA
s cb4.chrX             13719065 308 - 21540570 AAGAATCTGAACTTGa---gtt-----tgaattaaaaaattg-----ttttgagtTCTCAGAAACT---CTCAACGCCCgtttttctct---------------agaa------------aaaagatagaataTCCACGTTTTCAAATTATACAAGTG----GCCCAACAAA--------------AAGAGGTCGTTTAGAA-----------------ATCCAAATAACTTTATTA------------GAGATCTCAGTGAtgaggaaaatcaaaaatc---ggtaaatttGGTGGTTTTCTAGGAAAGATATGCAGTCTTCAAACATTATAAGAATGTGAATGGAACAAG---GAATGATGGAAAACAAACACTGGGAACAT-TAGCAACAAAAACAgga---------------tga
i cb4.chrX             I 187 C 0
s caeRem4.Crem_Contig0  4464642 208 +  4500979 AGGACTTCAGAATTGa---tcgaaaaacaaattgaaaaattgagacattAAGAcgtatttgaactt---tttattgaaaactgaacttt---------------agaa------------aaaaaatagaacatc------------------------------------a--------------aaatgttggttt---------------------------ttcaCTTTATAA------------GATATGGC-------ATGAGAATGTAGAAT-----GTAA-----------------------------------------TTTAAGAA------------ATG---GAATGATGAA----AAACACGGGGAATGA-CAGTaacaaga--agaa---------------caa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    16485 358 -   128984 -GAGATTTGAATTTACTGGCTGAAAAATCTATGTAAAAATCG-----TTCGAAAACTGCAAACTTTTACCGTGAAGTGAAAAATTACATATACCGAGA------AGTAATCtgcgttttcaaaaactcataCATC--------TATACTGAACAATTA--AGATTCAATAAAACagctgaaaactgaaatttttgcaaaacgtGGTCAGTTTTGAGTTTATTGAGGTGTTTCTGTTATGGAAGTCTTGTTATTTAac-------taaaaaacattttatcaaagaaaa------------------aatgttggtCTGTGTTCAAATTTTACCGGAA------------ATG-TTGAATAATTTGCAG--AACATTAATGGTATGGATGAATGATagtcgaagaaaaacaaaaataataa
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2978571 243 -  4147112 -AACTTCTTACGTCTC---ATGAACTAAGTACTAAAACTTCT-----TTTAGATACTGCA---------TTTGATGTAGTCTTCTATTTATTCCCAAAAACACTTGTG------------AAAAACTcgaatg-------------aatgaatatttatgaaattcaacaaa--------------aaattattggt----------------------------------cTGTCA--------TTGGCAAGTGCC-------AAAGATATGCCTAATCAAAGGTAA------------------AAGGA---------------------CAGAA------------AAG-TCAAACGATAGTCAGTAAACAAGAAAAGTAT---TCAATAAGAATAGAA----------------AA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951     9058 859 -   152553 I

a score=150220.000000
s ce10.chrX             2243374 503 + 17718866  
s cb4.chrX             13719373 495 - 21540570  
i cb4.chrX             C 0 I 24
s caeRem4.Crem_Contig0  4464850 485 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 33
s caeSp111.Scaffold576    16843 476 -   128984  
i caeSp111.Scaffold576 C 0 I 11
s caePb3.Scfld02_0      2978814 490 -  4147112  
i caePb3.Scfld02_0     C 0 I 97
s caeJap4.Scaffold4951     9917 467 -   152553  
i caeJap4.Scaffold4951 I 859 C 0

a score=0.000000
s ce10.chrX             2243877 3 + 17718866 CCA
e caePb3.Scfld02_0      2979304 97 -  4147112 I
e caeJap4.Scaffold4951    10384 0 -   152553 C
e cb4.chrX             13719868 24 - 21540570 I
e caeSp111.Scaffold576    17319 11 -   128984 I
e caeRem4.Crem_Contig0  4465335 33 +  4500979 I

a score=0.000000
s ce10.chrX             2243880 33 + 17718866 TCTTTCAGCTTTGAGCTCTTTTCATAAACTACT
e caePb3.Scfld02_0      2979304 97 -  4147112 I
e caeJap4.Scaffold4951    10384  0 -   152553 C
e cb4.chrX             13719868 24 - 21540570 I
e caeSp111.Scaffold576    17319 11 -   128984 I
e caeRem4.Crem_Contig0  4465335 33 +  4500979 I

a score=-18794.000000
s ce10.chrX             2243913 93 + 17718866 GAATTTTACAAGAAGTGAAAAAAACCATAGCATGTATTGAATTTTT--TGGAGAGTTGAAAAAAGAAAAAAAGCAATTAATTTTTTGTTTTAGGT
s cb4.chrX             13719892 65 - 21540570 GAAATTT--------AGGGAGAAAACATTTAGGAAGAAAGATTCGTGGAGGAACTTGGGAAGAAAATA----------------------TGGAG
i cb4.chrX             I 24 I 6
s caeRem4.Crem_Contig0  4465368 49 +  4500979 GGAAACT--------GGAGACAACCCGCT-------------------AGGCCCTTTGCATGACTATA-------------------TTTTAGAT
i caeRem4.Crem_Contig0 I 33 I 6
s caeSp111.Scaffold576    17330 22 -   128984 ---------------TGAAACGGATCACA-------------------ATGAGATT---------------------------------------
i caeSp111.Scaffold576 I 11 C 0
s caeJap4.Scaffold4951    10384 48 -   152553 ---------------TTAAAAAAGTCAca---------------------gttatttatttaataatC----------ATTTTTTGGTTCTTGA-
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2979304 97 -  4147112 I

a score=65177.000000
s ce10.chrX             2244006 80 + 17718866 AGCCATACCTTGTGACTTGAAGAAGATTTGCAATGGCACGGAATATCTGCCAAAACAATGAACCACTAACTCGTCTGAAA
s cb4.chrX             13719963 78 - 21540570 A--CGAACCTGGTAACCTGAAGAAGGTTTGCGATAGCGCGGAAGATTTGCCAGAAAATGGATCCGCTGACTCGTCTGAAA
i cb4.chrX             I 6 I 1
s caeRem4.Crem_Contig0  4465423 78 +  4500979 A--CTCACCTGGTAACTTGAAGAAGATTGGCGATTGCACGGAATATTTGCCAAAAAAGTGATCCGTTGACGCGACTGAAA
i caeRem4.Crem_Contig0 I 6 I 28
s caeSp111.Scaffold576    17352 77 -   128984 ---CCTACCTGGTAACTTGAAGAAGATTTGCAATTGCTCGGAATATTTGCCAAGATGTAGAGCCATTAACACGCCTTCAA
i caeSp111.Scaffold576 C 0 I 1
s caePb3.Scfld02_0      2979401 80 -  4147112 AGCCTTACCTGGTAACTTGAAGAAGATTCGCAATTGCTCGGAAGATTTGCCAGAACAAAGAGCCATTTACACGCCTGAAA
i caePb3.Scfld02_0     I 97 I 16
s caeJap4.Scaffold4951    10432 76 -   152553 ----ATACCTTGTGACTTGCAGAAGGTTGGCAATGGCGCGGAAGATCTGCCAGAACATAGAGCCGCTCACTCGCCTGAAA
i caeJap4.Scaffold4951 C 0 C 0

a score=0.000000
s ce10.chrX             2244086 1 + 17718866 T
e caePb3.Scfld02_0      2979481 16 -  4147112 I
e caeJap4.Scaffold4951    10508 0 -   152553 C
e cb4.chrX             13720041 1 - 21540570 I
e caeSp111.Scaffold576    17429 1 -   128984 I
e caeRem4.Crem_Contig0  4465501 28 +  4500979 I

a score=-3588.000000
s ce10.chrX             2244087 18 + 17718866 GCTGTCCAGTTCAAAGAA
s cb4.chrX             13720042 15 - 21540570 ---ATTTGATTTATCATT
i cb4.chrX             I 1 I 5
s caeSp111.Scaffold576    17430 13 -   128984 -----TAAACGTATGAAA
i caeSp111.Scaffold576 I 1 I 2
s caeJap4.Scaffold4951    10508  6 -   152553 ---ACTAAA---------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2979481 16 -  4147112 I
e caeRem4.Crem_Contig0  4465501 28 +  4500979 I

a score=1577.000000
s ce10.chrX             2244105 4 + 17718866 TTCT
s cb4.chrX             13720062 4 - 21540570 CTCT
i cb4.chrX             I 5 I 4
s caeSp111.Scaffold576    17445 3 -   128984 -TTT
i caeSp111.Scaffold576 I 2 I 9
s caePb3.Scfld02_0      2979497 3 -  4147112 -TTT
i caePb3.Scfld02_0     I 16 I 9
s caeJap4.Scaffold4951    10514 4 -   152553 ATCT
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4465501 28 +  4500979 I

a score=414749.000000
s ce10.chrX             2244109 649 + 17718866  
s cb4.chrX             13720070 645 - 21540570  
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0  4465529 650 +  4500979  
i caeRem4.Crem_Contig0 I 28 C 0
s caeSp111.Scaffold576    17457 636 -   128984  
i caeSp111.Scaffold576 I 9 C 0
s caePb3.Scfld02_0      2979509 633 -  4147112  
i caePb3.Scfld02_0     I 9 C 0
s caeJap4.Scaffold4951    10518 665 -   152553  
i caeJap4.Scaffold4951 C 0 C 0

a score=5116.000000
s ce10.chrX             2244758 6 + 17718866 CTGAAA
s cb4.chrX             13720715 6 - 21540570 CTGAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4466179 6 +  4500979 CTGAAA
i caeRem4.Crem_Contig0 C 0 I 40
s caeSp111.Scaffold576    18093 6 -   128984 ctaaaa
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951    11183 6 -   152553 CTGAAA
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2980142 0 -  4147112 C

a score=517.000000
s ce10.chrX             2244764 2 + 17718866 TA
s cb4.chrX             13720721 1 - 21540570 -A
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold576    18099 1 -   128984 -a
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951    11189 2 -   152553 TA
i caeJap4.Scaffold4951 C 0 I 39
e caePb3.Scfld02_0      2980142 0 -  4147112 C
e caeRem4.Crem_Contig0  4466185 40 +  4500979 I

a score=-444.000000
s ce10.chrX             2244766 2 + 17718866 GT-
s cb4.chrX             13720722 3 - 21540570 GGT
i cb4.chrX             C 0 I 34
e caePb3.Scfld02_0      2980142 0 -  4147112 C
e caeJap4.Scaffold4951    11191 39 -   152553 I
e caeSp111.Scaffold576    18100 0 -   128984 C
e caeRem4.Crem_Contig0  4466185 40 +  4500979 I

a score=894.000000
s ce10.chrX             2244768 24 + 17718866 TGATTTAATTAATGACCAATGTTT
s caeSp111.Scaffold576    18100 23 -   128984 tga-ttaattAATGATGAACAGTT
i caeSp111.Scaffold576 C 0 I 13
e caePb3.Scfld02_0      2980142  0 -  4147112 C
e caeJap4.Scaffold4951    11191 39 -   152553 I
e cb4.chrX             13720725 34 - 21540570 I
e caeRem4.Crem_Contig0  4466185 40 +  4500979 I

a score=0.000000
s ce10.chrX             2244792 554 + 17718866  
e caePb3.Scfld02_0      2980142   0 -  4147112 C
e caeJap4.Scaffold4951    11191  39 -   152553 I
e cb4.chrX             13720725  34 - 21540570 I
e caeSp111.Scaffold576    18123  13 -   128984 I
e caeRem4.Crem_Contig0  4466185  40 +  4500979 I

a score=546.000000
s ce10.chrX             2245346 1 + 17718866 T
s cb4.chrX             13720759 1 - 21540570 T
i cb4.chrX             I 34 C 0
s caeRem4.Crem_Contig0  4466225 1 +  4500979 T
i caeRem4.Crem_Contig0 I 40 C 0
s caeJap4.Scaffold4951    11230 1 -   152553 T
i caeJap4.Scaffold4951 I 39 C 0
e caePb3.Scfld02_0      2980142 0 -  4147112 C
e caeSp111.Scaffold576    18123 13 -   128984 I

a score=1910.000000
s ce10.chrX             2245347 2 + 17718866 AC
s cb4.chrX             13720760 2 - 21540570 AC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4466226 2 +  4500979 AC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    18136 2 -   128984 AC
i caeSp111.Scaffold576 I 13 C 0
s caeJap4.Scaffold4951    11231 2 -   152553 AC
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2980142 0 -  4147112 C

a score=260340.000000
s ce10.chrX             2245349 364 + 17718866 CTTGCAGAAATAAGTGCGTTTATGAGCGGAAGCTCCAAATGAGCATGATAAAACATCCCGAGCTCCCATGATGGGTCTATCAGCTTGGCATGTCGGAAAAGAAATGGGATAAATGCGACAATACTTAAAATATCGGCAATAGCCGAAGCTTTCAAGTAGAGGAATATGCTAGTTCGAATGTGAAGAAGTGTGCACACATTCAGACATTGATTTATCATTCCTG------AAATATAAAAACGTAT------------------ACTCTCAGAATGTATAAA---TGAAA-ATACCTATGGATAAAACGATTGGCATAACGATGACATGGGCGACATAATCGACATGATTCATTTCGGGAGAATCATCCAATGAAGTGGTGCGGAAGCTGAAA
s cb4.chrX             13720762 369 - 21540570 CTGGCAGATATGAGGGCATTAATGAGAGGTAGTTCCAAATGAGCATGATAGAACATTCCTAACTCCCAGGTTGGGTCGATCAGTTTGGCGTGTCTTAGGAGGAATGGAATAAAAGCCACAATGCTCAAAATATCAGCAATTGCAGATGCTTTCAAGTACAAAAAGATGCTGGTTTTGATATGGAGCAATGTACAAACATTCAAGCACTGATTAATCATTCCTG------AAGCATTGAAGTGTGt------------aagaacgttttttttttcaccgaG---TT-TC-TTACCTATGGATAATACGATGGGCATGACAATGACGTGCGCAACATAGTCCACATGATTCATTTCGGCAGAATCATCCACTGAGGTAGTACGGAAACTGAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4466228 366 +  4500979 CTTGCTGAAATCAGACCATTGATTAATGGGAGCTCCAGATGAGCGTGATAAAACATTCCAAGTTGCCAAGATGGGTCGATAAGCTTTGCATGACGGAGAAGAAATGGGATAAATGCAATGATACTCAGAATATCTGCTATTGCGGATGCTTTCAAGTATAAGAATATACTCGTTTTGATGTGCAATAGTGTACATACATTGAGGCACTGATTAATCATCCCTG------AATTATTCACGTGTat----------------acacttttttgttgtttggg---TGATA-ATACCTATGGATAACACTATGGGCATTACAATGACATGAGCAACGTAATCGACATGATTCATTTCGGGAGAATCATCCAACGAAGTAGtgcggaatctgaaa
i caeRem4.Crem_Contig0 C 0 I 415
s caeSp111.Scaffold576    18138 364 -   128984 CTAGCTGATATTAAAGCATTGATCAACGGAAGTTCCAGATGAGCATGATAAAACATTCCGAATCCCCAAGAAGGGTCAATGACATTTGCGTGTCGGAGAATGAAGGGAACGAAGGCAACAATACTTAGAATGTCTGCTATGGCCGATGCTTTCAAGTAAAGAAATATACTTGTTTTGATATGAAGTAATGTGCAAACATTCAGGCATTGGTTTATCATTCCTG-----GAATGAAATAATTATAT------------AGGAGTGATGTTCA--CTACAG--------TA-TTACCTATAGTCAAGACTACGGGCATGACGATGACATGAGCAACATAATCGACATGATTCATTTCGAGAGAATCATCCAATGATGCCGTGCGGAAGCTGAAA
i caeSp111.Scaffold576 C 0 I 468
s caePb3.Scfld02_0      2980142 367 -  4147112 CTTGCGGATATCAGAGCATTGATTAGTGGAAGTTCCAAATGAGCATGATAAAACATTCCAAGTTCCCAAGTAGGGTCGATGAGTTGCGCATGTCGtaataaaaatggaatgaaagcTACAATGCTCAGGATATCGGCGATTGCCGATGCTTTCAAATATAGAAATATGCTCGTTTTGATATGAAGTAGTGTGCAGACATTCAGACATTGATTAACCATTCCTG-----TAAAAGATGAATGCAAA------------CTTTGTGATTTTCCGTCAAAAG--------TACTTACCTATAGATAAAACGATGGGCATGACGATAACATGAGCGACGTAATCGACATGATTCATTTCGGGAGAATCATCCACAGACGTTGTGCGGAAACTGAAG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    11233 391 -   152553 CTCGCAGAAATTAGTGCATTAATCAATGGGAGCTCAAAATGTGCGTGATAAAGCATTCCGGTTTCCCACGTCAGATCGATGAGATTCGCATGACGTAAAAGAAAAGGAATGAATGCGAAGATACTCAGAATGTCAGCTATTGCGGATGCCTTGAGGTAGAGAAATATACTGGTTCGGATATGGAGAAGTGTGCAAACATTCAAACATTGATTAATCATTCCTAATAAGAAATTAAGAATGAGTATGGTTTGAGTTATAATAATCGTATTAAATTagatgaaattttgaa-ttaccTATTGAAAGAACGATCGGCATCACAATGACGTGGACAATATAGTCGATATGATTCATTTCGGGTATATCATCAATTGAAGACGAGCGGAAGCTGCAA
i caeJap4.Scaffold4951 C 0 C 0

a score=-121.000000
s ce10.chrX             2245713 5 + 17718866 TATAA
s cb4.chrX             13721131 3 - 21540570 --TTG
i cb4.chrX             C 0 I 1
s caePb3.Scfld02_0      2980509 3 -  4147112 --CAG
i caePb3.Scfld02_0     C 0 I 785
s caeJap4.Scaffold4951    11624 5 -   152553 AATAA
i caeJap4.Scaffold4951 C 0 I 116
e caeSp111.Scaffold576    18502 468 -   128984 I
e caeRem4.Crem_Contig0  4466594 415 +  4500979 I

a score=505.000000
s ce10.chrX             2245718 52 + 17718866 AACAAATACAACTTTTTTAAAAAAGGTTTTTGATTATTGGATATTCATTAGG
s cb4.chrX             13721135 52 - 21540570 GGAGTTTAAGATTTTATTATTGATGTTTAATGATTTTATTGTGTTTATTAGG
i cb4.chrX             I 1 I 1170
e caePb3.Scfld02_0      2980512 785 -  4147112 I
e caeJap4.Scaffold4951    11629 116 -   152553 I
e caeSp111.Scaffold576    18502 468 -   128984 I
e caeRem4.Crem_Contig0  4466594 415 +  4500979 I

a score=0.000000
s ce10.chrX             2245770 1044 + 17718866  
e caePb3.Scfld02_0      2980512  785 -  4147112 I
e caeJap4.Scaffold4951    11629  116 -   152553 I
e cb4.chrX             13721187 1170 - 21540570 I
e caeSp111.Scaffold576    18502  468 -   128984 I
e caeRem4.Crem_Contig0  4466594  415 +  4500979 I

a score=772.000000
s ce10.chrX             2246814 61 + 17718866 ATATGTAGATATTAAGGTTGCAAAATGG----CAAAATAAAATGCTGTGAGCACTAAGCATAGCG
s caePb3.Scfld02_0      2981297 59 -  4147112 ATGGATAAATGAAAAGTTTGCAAAACGGACAGTACAATAAA------TAAGCGTTTCACATCACT
i caePb3.Scfld02_0     I 785 C 0
e caeJap4.Scaffold4951    11629 116 -   152553 I
e cb4.chrX             13721187 1170 - 21540570 I
e caeSp111.Scaffold576    18502 468 -   128984 I
e caeRem4.Crem_Contig0  4466594 415 +  4500979 I

a score=273.000000
s ce10.chrX             2246875 1 + 17718866 T
s caeRem4.Crem_Contig0  4467009 1 +  4500979 T
i caeRem4.Crem_Contig0 I 415 C 0
s caePb3.Scfld02_0      2981356 1 -  4147112 T
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951    11629 116 -   152553 I
e cb4.chrX             13721187 1170 - 21540570 I
e caeSp111.Scaffold576    18502 468 -   128984 I

a score=1910.000000
s ce10.chrX             2246876 2 + 17718866 TC
s cb4.chrX             13722357 2 - 21540570 TC
i cb4.chrX             I 1170 C 0
s caeRem4.Crem_Contig0  4467010 2 +  4500979 TC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2981358 2 -  4147112 TC
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold4951    11745 2 -   152553 tc
i caeJap4.Scaffold4951 I 116 C 0
e caeSp111.Scaffold576    18502 468 -   128984 I

a score=82673.000000
s ce10.chrX             2246878 181 + 17718866 ACTTACAAAAAGTGCACCAATCCCGCGTTATAGACGATAGTGAGGAAAAGAACGAGTGCTTTCACAAAAAG-TTTGTACTTATATCTGCAGTCGAAGATTCTACGCAGCAAGAACAACAACATGGACGCCTAAGTCCGT--------GATATTTCTGTAA-----------------------AAATACATT--TAATCGAGAAGAAAAGAAGTT-
s cb4.chrX             13722359 185 - 21540570 ACTTACAAGAAATGTACGAGTCCTGCGTTATAGACGATAGTGAGAAACAGAACAAATAAACTGATGAATAT-TTTGTACTTGTTCTTGCTGTTAATGATCTTACGAAGTAAAATCACAAACATTGACACCTAGTTT-----------GACGCTTCTGAAATG------------------AATGAAGACGTTATGAGGCGGAAGGCGAAGAAGAG-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4467012 183 +  4500979 ACTTACAAGAAGTGTACCAATCCCACGTTATAGACAATAGTGAGGAACAGGACAAATGCTTTGAT-AATATACTTGTATTTGTGTTTGCAGTTGATGATTTTACGAAGTAAAATGAGAAACATTGACACCTAGGTC-----------accacttctgaaa--------------------aataaatttcttagAATTTCGGAGGAGACAAGAAG-
i caeRem4.Crem_Contig0 C 0 I 51
s caeSp111.Scaffold576    18970 183 -   128984 ACTCACAGAAAATGCATCAATCCTGCATTATAGATAATTGTAAGAAATAGTACAAAGGCCATTACAGACAG-TTTGCATTTATGTCTGTAATTGATGATTTTACGCATCAAGAACAGTAACATCGAGACCTATGTc-----------acagtttctgaaa--------------------attgaagaacttgatttttcgaaaggaaaaaaaga-
i caeSp111.Scaffold576 I 468 I 25
s caePb3.Scfld02_0      2981360 183 -  4147112 ACTTACAAAAAATGCACCAATCCCGCGTTATAGACAAGAGTGAGGAATAATACAAACGCCTTGACAAAAAG-TTTGTATTTGTATCGGCAGTTGATGATCTTACGGAGTAAAGATATCAACATTGACACCTAGATC-----------ACCgcgtctgaaa--------------------attggatatcTCGGTATTTCAAATGAAGCAATAAG-
i caePb3.Scfld02_0     C 0 I 27
s caeJap4.Scaffold4951    11747 210 -   152553 aCTCACAAGCTATGTACAAATCCCGCCTGATAAacaattgtcaaaaatagcaCAAAGATTTTAACGGACAG-TTTGCACTTGTACCGCcagtcgaaaatttttcgtagAACGGTCAATAGCAT-----CCTAGATTTATTAGCTGCGAAACTTTCTGAAATGTTCGGCCTACGCTTGTTTGTTCCAAACGGGTGGATTCATAGAGCAAAAGGAAGT
i caeJap4.Scaffold4951 C 0 C 0

a score=-4695.000000
s ce10.chrX             2247059 33 + 17718866 -AAGGCGGCAAG-------------CAATATATTTATATTGTTCGTG
s cb4.chrX             13722544 43 - 21540570 -AAAGGGAACATGAGCAGAATGCGAAGACAAAAGTG---CGTTCGAG
i cb4.chrX             C 0 I 3
s caeSp111.Scaffold576    19178 30 -   128984 -aaatgagaaat-------------aaatgaaattg---cGTTCGGA
i caeSp111.Scaffold576 I 25 C 0
s caePb3.Scfld02_0      2981570 28 -  4147112 -AAGGCGGAGAC---------------ACGAGATTG---CGTTCGAA
i caePb3.Scfld02_0     I 27 C 0
s caeJap4.Scaffold4951    11957 17 -   152553 AAAATAGAACAA-------------GGATG-----------------
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0  4467195 51 +  4500979 I

a score=6959.000000
s ce10.chrX             2247092 11 + 17718866 GAATAGGCGGC
s cb4.chrX             13722590 11 - 21540570 GAGAGGGCGGA
i cb4.chrX             I 3 C 0
s caeRem4.Crem_Contig0  4467246 11 +  4500979 AAGAGGGCGTG
i caeRem4.Crem_Contig0 I 51 C 0
s caeSp111.Scaffold576    19208 11 -   128984 AAGAAGGCGTG
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2981598 11 -  4147112 AAGAAGGCGGG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    11974 11 -   152553 AAGTTGGCGGC
i caeJap4.Scaffold4951 C 0 I 45

a score=-1313.000000
s ce10.chrX             2247103 57 + 17718866 ATC---------GTGCCATTTAATCTTGCACGATTACTGGTTTTGGCG--------TTCTCGGAAAACCGGGCG
s cb4.chrX             13722601 73 - 21540570 GCTTACTGCGGTGTGTCGTCGTCGTTGGCGAGATTTATGTTTCTTTTCGATAGTGCTTCCAGGAAACGCACGA-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4467257 42 +  4500979 GCC--------TGTCTCGTC-------TCAAGATTTATGG----------------TTCCAGGAAAAGCCGGC-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    19219 42 -   128984 TCC--------TCTTTCATT-------TTATGGTTGATGG----------------TTCTAGGAAAAGGCATT-
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2981609 42 -  4147112 GTG--------TCTCCCATC-------TCATGGTTTATGA----------------TTCTAGGAAAAGCCGAC-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    11985 45 -   152553 I

a score=-13246.000000
s ce10.chrX             2247160 156 + 17718866 GGCAAAATTTAATTTGAAAA--GG------------------------------AGCAGAGGAA-------------------------------T---------ATGCCAAA------------AAAAATTCGATC---------GCCTATACTCTTCCA---------------------------AATAAAACGAAT---------TGTGAGAAAAATGATGTGATGATGCGCAAACACTTG-------------------CCAAAAAGCA--AAATAACA-----------------GCGATAGAATTGAAATGCGAGA
s cb4.chrX             13722674 253 - 21540570 AACAAAAGTTAATTGGAATTTGGGTATTTGAAACAAAAGGATTCTCGGAATTCTAGacagaaaaacgaaacaatatcttggaattttttcttaatt-----tgagaaaatggg------------aaaaatctGACC---------ACCCGTTCT-----------------------------------TGGAACACATAAGGATAGATG----AAGGATGATGCGATGAAAGGCAAACACTTGATTTTCActtgaaaacaaaagaaatggtc--ccaaaataagtgaaaagatgag---aagaaagagttgaaatgtgaga
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4467299 181 +  4500979 GGTCAACGTTAATTGGACACT-GGTATTAGAAATCTTAGGATTCTCG-------AGacgaaaaa--------------ttcaacttttttccaatt---------aaatCAGG--------------GAATCGTGCC---------ACCCTTTCT-----------------------------------CGGAACGCAT---------TGC---AAAGATGATGCGATGAAAAGCAAACACTTG-------------------CGCAACAgcc--caaaaaca--------------------gaaaaattgaaatgtgagA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    19261 199 -   128984 CGTAAAAGTTAATTTGAAATCTGG------------ACGGGCGTCTA-------AAGTTGGGAG-------GAAATCATGGGAATCT------CTT-------TCaaattaaacttttttccaatcaaaatgaaatt-gaaaagccACCCGTTCC-----------------------------------GAGAACGAGT---------TGC---AGAGATGATGTGATGAAGAGCAAACACTTG-------------------CGAAACGGCTCccagaaac------------------agaaaagagtTGAAATGTGAGG
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2981651 208 -  4147112 GGCAAACGTTAATTTGAAATCTGG-----------AAAGGACGTTTG-------AGATTTG------------ACTGTTGGAAATCTCAACAACTTAGGCTAGCcaaattaaacttttttctaatcaaagTGGGATTCCGGGAGCTCCCCGTTCC-----------------------------------GAGAACCAGT---------AAA---ACGGATGATGCGATGAAGAGCAAACACTTG-------------------CGAAACAAct---aaaaaca-------------g---agaaaagaattgaaatgtgAGG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    12030 231 -   152553 GGCAACAGATAAAATAAGA---AGAATGAGCCAATCAAAAAGTtatg-------tgcaaaaaaa-----------tgttggaa--cGGAATCACTT----------GACCGAC------------CTGCTGGCAATCtcaaaattaaactttttttttcaattttgagaTTTCTCCTGCATGTTTCACAGAACAACAGAA---------TA----AACGATGATGTGATGATGAGCAAACACTCA-------------------AGGAACCGCC--CAAGAACA-------------GCTTTTGAAGCATAAGAAATGCGAAA
i caeJap4.Scaffold4951 I 45 I 1864

a score=4659.000000
s ce10.chrX             2247316 451 + 17718866  
s cb4.chrX             13722927 483 - 21540570  
i cb4.chrX             C 0 I 834
s caeRem4.Crem_Contig0  4467480 429 +  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold576    19460 527 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2981859 469 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I

a score=24050.000000
s ce10.chrX             2247767 107 + 17718866 GGGTT-TCTTGAAATTAGTTTCCTTCCGAGCAAGGAATCAATGCA-----------GAAAGCATTGAGTACGACGTCAT------GGGACCTTCTTAAACGTGAGAAATAAAAGTATGATGAAGT
s caeRem4.Crem_Contig0  4467910 106 +  4500979 --ATA-TCTCGAAATTAGTTTC--TCAACTCAAGAAATCAATGC------------AGAAAACTTATGTGCGACGTCATCCAACCGGGACCATAAAAAACATGATAG--CAAGTTTTGATGGAGT
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold576    19987 114 -   128984 -GAGGCCCCTGAAATTGGTTTC--ACGACGTTAAGAATCGATGGAGAAAG------GGAAGAGTCGTGTACGACGTCATTCAAGCGGGACCCTAATAAACATGAGAG--CAAGTTTTGATGAAGT
i caeSp111.Scaffold576 C 0 I 649
s caePb3.Scfld02_0      2982328 119 -  4147112 -AACA-TCTTGAAATTGGTTTC--ACAGCGTATGGAATCAGTgcaagaagaaggaaaggagAGTTGTGCACGACGTCATTCAAGCAGGACCCTAATAAACATGAGAG--CAAGTTTTGATGAAGT
i caePb3.Scfld02_0     C 0 I 58
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I

a score=-600.000000
s ce10.chrX             2247874 61 + 17718866 CTTTT--------GTACAACAAAAAAAAGTTCGAAATACATCTGAGACTTACCACGACATACT-----------AAGAGG
s caeRem4.Crem_Contig0  4468016 67 +  4500979 AAATTTGGATGGGATGCAGCGGAAAAAA-------------CGGAGATTTTCTGGGACATTTGAGTCAAGTTAAAAGGGG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0      2982447 58 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I
e caeSp111.Scaffold576    20101 649 -   128984 I

a score=5909.000000
s ce10.chrX             2247935 54 + 17718866 TCGAAGCGTGATCGGATTGG-TTTACAAGAAAAAAAACGCATG-AATGTACACAAA
s caeRem4.Crem_Contig0  4468083 47 +  4500979 TCAACGCGTGATCCGATTGGTTTTAT---------GATGCATGTAATGTACACAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2982505 46 -  4147112 TCAACGCCTGATCCGATTGG-TTTGC---------AACCAACGAAATGTACACAAA
i caePb3.Scfld02_0     I 58 I 899
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I
e caeSp111.Scaffold576    20101 649 -   128984 I

a score=474.000000
s ce10.chrX             2247989 53 + 17718866 CTACGCATCATTCT------TTCTTTTTGTGTA-----------AGCAAAATTGGGGGCACTTTTGGAAT
s caeRem4.Crem_Contig0  4468130 64 +  4500979 ------ACTATTTCAAAGAACTCCTTTTGCGTATAAGAAATGGTAGCTAATTTGTAAGTACTTGAAGAAT
i caeRem4.Crem_Contig0 C 0 I 489
e caePb3.Scfld02_0      2982551 899 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I
e caeSp111.Scaffold576    20101 649 -   128984 I

a score=0.000000
s ce10.chrX             2248042 1109 + 17718866  
e caePb3.Scfld02_0      2982551  899 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410  834 - 21540570 I
e caeSp111.Scaffold576    20101  649 -   128984 I
e caeRem4.Crem_Contig0  4468194  489 +  4500979 I

a score=257.000000
s ce10.chrX             2249151 9 + 17718866 TTTGAACTG
s caePb3.Scfld02_0      2983450 9 -  4147112 TTCAAACCT
i caePb3.Scfld02_0     I 899 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I
e caeSp111.Scaffold576    20101 649 -   128984 I
e caeRem4.Crem_Contig0  4468194 489 +  4500979 I

a score=145.000000
s ce10.chrX             2249160 2 + 17718866 CA
s caeSp111.Scaffold576    20750 2 -   128984 CA
i caeSp111.Scaffold576 I 649 C 0
s caePb3.Scfld02_0      2983459 2 -  4147112 AA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13723410 834 - 21540570 I
e caeRem4.Crem_Contig0  4468194 489 +  4500979 I

a score=46051.000000
s ce10.chrX             2249162 103 + 17718866 AAATCTAGTTAATCAGAAA--T-GCAA-----GCAACGAAACAGTCACAA-ACAGAG-----------GTCAGGTGCTCAATTAATTAGCTTTGTTAGCGCGTAGGCGC---AAAGCAATAATATA------
s cb4.chrX             13724244 116 - 21540570 AAATCTAGCCAATCAAAAGACTAGCAAAGAATACAACAAAACAATGATAG---AGAGGTC----AGT-GTCAGATGCTCAATTAAGTAGCTTCGTTATTGCGTAGGCGCTCGAA--AAacaagaga------
i cb4.chrX             I 834 I 2
s caeRem4.Crem_Contig0  4468683 120 +  4500979 aaatctagCCAATTAGATAAAT-GTGAAGACTGCAACAAAACAGTGACAAAACAGAGGTCACAGAGTAGTCAGATGCTCAATTAAGTGGCTTAGTTACTGCGTAGGCGC---AA--CCATAACAAA------
i caeRem4.Crem_Contig0 I 489 I 200
s caeSp111.Scaffold576    20752 126 -   128984 AAATCTAGCCAATTAAGAGAAC-ATAAAAACTGCAACAAAACAGTGACAAGACATAGGTCACAAAGTAGTCAGATGCTCAATTCATTGGCTTAGTTAGTGCGTAGGCGc---ga--taaaaacaaaaatctg
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2983461 118 -  4147112 ATATCTAGCCAAT--------A-ATGAATATTGCAACAAAACAGTGACAAGACAGAGGTCAGAGAGTGGTCAGATGCTCGTTTAATTGGCTTTGTTATTGCGTAGGCGC---CA--TAATAACAAAAATCTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I

a score=-7978.000000
s ce10.chrX             2249265 140 + 17718866 TGACAAGCATTTTAGGCTAATCGTTCCGAAAGCATTTGTAGCGAAACATCATAAGAATGAA----AGATTCATCATTAAATAAAATAGTTTGAAGAAG-------------------CCATTGAAGCAGATAACTTTGGAATTCCAGTTGG--AT-AGTTCGAGAG
s cb4.chrX             13724362 132 - 21540570 -----------------agagaaaactTTCAGCTTT---------TCAGTTTCTAGCTGAAGTTGACATGTATTATTTG-------GTTATAAAAcacactgaaaaattatttaaagcCGATCAAGCAGATAATCATTAAAGGACACTCAAGcagaagtttgaga-
i cb4.chrX             I 2 C 0
s caeSp111.Scaffold576    20878 113 -   128984 -----------tCAGGCTGAATGTAC----AAAACT-------AAACCGTTGTAGATAAAAGTTCCTGTTAATCATT---------GCTGTGAAGTGC-------------------TTAATCAGGCAGATGAGCATTGTATAACACTTGA--ATAACTTCGAGA-
i caeSp111.Scaffold576 C 0 I 1
s caePb3.Scfld02_0      2983579 116 -  4147112 -----------TTA-TCTGAAGACActtgaaaatcttg----gaaacaatttt---tcaaactcgaAGTTAATCACT---------AATCGAGAGCGT-------------------CTAATCAGGCAAATGAACATTGTATTACAGTTGA--ATGATTCCGAAG-
i caePb3.Scfld02_0     C 0 I 91
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e caeRem4.Crem_Contig0  4468803 200 +  4500979 I

a score=1382.000000
s ce10.chrX             2249405 25 + 17718866 ATAAGAGTGG---AAAAAGTTGAAAAAA
s cb4.chrX             13724494 15 - 21540570 -------------aaaaagttgaaaaaa
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold576    20992 26 -   128984 --TTGATTGAGTTGGAATGTTaaaaaaa
i caeSp111.Scaffold576 I 1 I 163
e caePb3.Scfld02_0      2983695 91 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e caeRem4.Crem_Contig0  4468803 200 +  4500979 I

a score=216.000000
s ce10.chrX             2249430 28 + 17718866 ACGCTTATCTAGTTTTTAAGCATACGTA
s cb4.chrX             13724509 19 - 21540570 at---------gtgttttgggATACGTA
i cb4.chrX             C 0 I 157
e caePb3.Scfld02_0      2983695 91 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e caeSp111.Scaffold576    21018 163 -   128984 I
e caeRem4.Crem_Contig0  4468803 200 +  4500979 I

a score=0.000000
s ce10.chrX             2249458 493 + 17718866 TCAAAGATGAATACATTAAGAAATATGATTCTACCCCTATTAGttaaaggtggagtagcgacagtagggattttgtctaaatacagttataatgacaatagttacaataaataaagttataattaggtagtatattgacaaccgaatattactttaaaacaccgaaaagattcagattttttaaaatttccacacaatgttttggcaaattgccaaatttaaaaaaaaaagagcttttatggaaattttgggaaatttcgcatgtccatagaatgtcttaacaccaataattaaaacgaaaataaagtataaacaacatggaaaaaaaatttccttggtaaacttccaaaatgatgagtggcaaaatttagtaattgccacttttttcaggaaaaaaaatccaattttttttgaaaagttttgttatgatgtttggacatattggcaccataggagaagatagtttttgacactctccctactggcgctactG
e caePb3.Scfld02_0      2983695  91 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13724528 157 - 21540570 I
e caeSp111.Scaffold576    21018 163 -   128984 I
e caeRem4.Crem_Contig0  4468803 200 +  4500979 I

a score=649.000000
s ce10.chrX             2249951 28 + 17718866 TTCTTTAAAACATGAAA--AAATATTAAAC
s caeRem4.Crem_Contig0  4469003 30 +  4500979 ttcttaaaattctaaaattggataacaaac
i caeRem4.Crem_Contig0 I 200 C 0
e caePb3.Scfld02_0      2983695 91 -  4147112 I
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13724528 157 - 21540570 I
e caeSp111.Scaffold576    21018 163 -   128984 I

a score=-185.000000
s ce10.chrX             2249979 116 + 17718866 --CAAAATGTGTAATTTATATTTAATGATATCTCTCAC-TTACATGTTCGAGTTCATTTCTTGTTTTTTTCAATGAATCGTACCTAATTTCAGAGTAATTTTCAATAATAATAGTTTTC-
s caeRem4.Crem_Contig0  4469033 103 +  4500979 tttaaaaaatgaaacccGCAGTTAATGATACCTTTGGACCTAGATGTTCCTCGACag--------------agaaaacactttttaaattgag---aatttccagaatttcaaagttttc
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0      2983786  95 -  4147112 -CAAAgtgatgaaatttgaacttaaTAATACGTTGGGA-CTAGATGttcgaatttca--------------agaaaacatcCCCTAAAC---------TTTGCAGacttgttattttttt
i caePb3.Scfld02_0     I 91 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e cb4.chrX             13724528 157 - 21540570 I
e caeSp111.Scaffold576    21018 163 -   128984 I

a score=-1838.000000
s ce10.chrX             2250095 17 + 17718866 AATTTCTGATTTA-------------AGCG
s cb4.chrX             13724685 30 - 21540570 AATTTCAGGTTTGTGTTATTCTAGTAATTC
i cb4.chrX             I 157 C 0
s caeRem4.Crem_Contig0  4469137 14 +  4500979 aaattctgat----------------atCA
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0      2983881 25 -  4147112 aatttattctttAAACTTCAT-----AGTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    12261 1864 -   152553 I
e caeSp111.Scaffold576    21018 163 -   128984 I

a score=-2282.000000
s ce10.chrX             2250112 16 + 17718866 TAAACAATCAACA---TTC
s cb4.chrX             13724715 13 - 21540570 TTGAAAAACCACA------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4469151 19 +  4500979 TTGGTAAACAACAAGATTG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2983906 19 -  4147112 TCAAAATATTAAAACATTT
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold4951    14125 15 -   152553 taaacaaaaaata---tt-
i caeJap4.Scaffold4951 I 1864 C 0
e caeSp111.Scaffold576    21018 163 -   128984 I

a score=18357.000000
s ce10.chrX             2250128 60 + 17718866 AAAATCAAAACTC--------AATTTC----A----------AAATGGCTTACCCCATTCCGCTGTTTTCTTGCAGCATCTT
s cb4.chrX             13724728 59 - 21540570 AACAAC--aatt----------atctggaaaa----------atttgactTACCTCATCCCGCTGTTTTCGGGCAACATCT-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4469170 66 +  4500979 AAAATC--AATCCGA--GA--AACTTTAATAA----------ATCTGGCTTACCTCATTTCGACGTTTTCTGGCAACATCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    21181 68 -   128984 AAGATCAAGATTCAATTGGATAGTTTC----A----------AGTTGGCTTACCTCATCCCGCTGTTTTCTTGCAACATCCT
i caeSp111.Scaffold576 I 163 I 15
s caePb3.Scfld02_0      2983930 62 -  4147112 --------CATATAAttag--aatttctgaaa----------agttggCTTACCTCATCCCGCTATTTTCTTGCAACATCGT
i caePb3.Scfld02_0     I 5 I 4
s caeJap4.Scaffold4951    14140 54 -   152553 ----------------------------aaaagagAAACAACATTTTACCAACCTCATTACGCCGTTTTCCTGCAACATCCT
i caeJap4.Scaffold4951 C 0 C 0

a score=-7359.000000
s ce10.chrX             2250188 22 + 17718866 GCACTCTGACTCTAGTTTGAAA--
s cb4.chrX             13724787 17 - 21540570 -----GTTATTCCTACTGCAAA--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4469236 22 +  4500979 TCACAGCTATTTTGAGAGCGTA--
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      2983996 14 -  4147112 -CCAACCGATTTCTA---------
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951    14194 16 -   152553 --------GCGCGAACTGCGTGAA
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576    21249 15 -   128984 I

a score=127754.000000
s ce10.chrX             2250210 366 + 17718866  
s cb4.chrX             13724804 388 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4469258 392 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    21264 412 -   128984  
i caeSp111.Scaffold576 I 15 C 0
s caePb3.Scfld02_0      2984010 405 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    14210 472 -   152553  
i caeJap4.Scaffold4951 C 0 I 788

a score=16263.000000
s ce10.chrX             2250576 242 + 17718866 AAAATTAATACTGG-------------------TTTATG---AATT------------------TTCAAGAAG---------------------------AACTGACACAAAAT-AAGTAGC----------ACTGACTGATAAGAAAAGTTCATAAGATCAC--CTAGACCTACGTTACGTTCAAAACGATCACACCCGTCATA----CTCCCACAATCCAGAAATATAGCTTCCAAAATAGACGGCACGCACAAATTTTC-----------AAATTTTCATATGAGCTCAACATCAAAGGTTGCTCGTCTGCAGCAAATTGTGTCTGCT-CGTCAC
s cb4.chrX             13725192 225 - 21540570 -----------------aaaaacgtgaaG----TAGGTGGCCAGTTTAGTTTTGtt--------tcattgaatttcaattcaaattggg--------cgaaactgataagaaat--gaTAGT-----------------AGAGTGCAAAAGATCAACGAGCAC------AATCGACTA-----TGTTCTGATC----------------TGCCCACCACCCTGAA-----AA------------AGTCGAATACACAATTTTTTCCATAAAGGATGTCCCCAC----ACACA--ATTGAAAAGT----GTCT---GCAAATTGTGTCTGGTCcgtcac
i cb4.chrX             C 0 I 10
s caeRem4.Crem_Contig0  4469650 275 +  4500979 aagg--aagaccagaggaagaaaaTGGAGTTGATTGGTGGCAAGTT--------TT--------TCGGGGAATTCGAATTTGAATAGTGAACTGATAAGATACTGGCAAGAAGT--GAAGAC---------------TGATaaggaaaaaaccaaaagatcag------aattACGTAGCACTTGTTCTGACCACACGAATCTGGGCTATTCCCACAATccaaaa-----gattcaaaaatagcagccaaattcaatatttc-----------ataTGCCTACATGGACACA--ATTGAGAGATGCTCGCCT---GCAAATTGTGTCTAGT-cgtcac
i caeRem4.Crem_Contig0 C 0 I 36
s caeSp111.Scaffold576    21676 274 -   128984 aaaaagaaaactggaagaaat------------tagaag---aatt-------GTTGCGAGAATTCGGAGAAACGTAATTTGAATGAAC-----------TACTGATAAGATAC--GGAAAC----CTCCTTTCAAATTGATAGGAAAAGAGTAAAAGATCACTAGAAAAGTTACGTAACGTTTGTTCTGATCAGATCGAC--------CAgtcataattcaaaaatatggattcaaaaatagcATTCAGatacaatttttc-----------atatGCCTACATGGACACA--ATTGAAGGATGCTCGCCT---GCAAATTGTGTCTAGT-CGTCAC
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2984415 270 -  4147112 tagaa-aagagtaggagaaataaaaaagg----aagaag---agtt------gGTGGCGAGCATTCAGAGAAGCGACATGTGAATGGAG-----------CACTGATAAGATATCAGGAAACTAAACTACCTTCGATTGAGCA--AAAAGTCTAAAAGATCAC---------TACGTAGAGAATGTTCTGatcagat---------------ttttcattcacaaatatggatttgaaaatagcagtcaaatacaatttttc-----------atatgCCTACACGCACACA--ATTGAAGGATGCTCGCCT---GCAAATTGTGTCTAGT-CGTCAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I

a score=-3045.000000
s ce10.chrX             2250818 51 + 17718866 ------CGACGAATTTCGAACGAAAAAAAAAAAGATGTGGTGCGAAA-ATTGTCGGAC--
s cb4.chrX             13725427 36 - 21540570 ----ttaagcatttttagaaaaa--------------------gagacatttttgaattg
i cb4.chrX             I 10 C 0
s caeSp111.Scaffold576    21950 35 -   128984 ATTTGTGGACAATTTTGGCAGTG----------------------GA-ATTTTTGGAG--
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2984685 28 -  4147112 ---------CAAATTTAGCGAGA--------------------GCGA-ATTTTTGGAG--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e caeRem4.Crem_Contig0  4469925 36 +  4500979 I

a score=33077.000000
s ce10.chrX             2250869 78 + 17718866 AATGCTGCAT---GTCTGGTCACTCA-----GCATGCAAATTGGAATAGGGT-GCCTCCAAAAAAATGATTGTTTGAACTGAGGATA
s cb4.chrX             13725463 70 - 21540570 ---gcTGCA----GTCTGGACACTCA-----AAATGCAAATTGGTCCGAAAT-AGCGCTC----GTTGATTGTTTGAACCGTGAGTA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4469961 77 +  4500979 AAGGATGCA----GTCTGGTCACTCA-----AAATGCAAATTGGTCCGAGATGGGAGCTT-ACAATTGATAGTTTGAACTATGAGTA
i caeRem4.Crem_Contig0 I 36 C 0
s caeSp111.Scaffold576    21985 79 -   128984 ---TCTGCATTGCGTCTGGTCACTCAAGGTCACATGCAAATTGGTCCAAGAT-GGAACTC----GTTGATTGTTTGAACTATGAGTA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2984713 74 -  4147112 ---CCTGCATAGTGTCTGGTCACTCA-----ACATGCAAATTGGTCCGAGAT-GGAACCA----TTTGATTGTTTGAACTATGAGTa
i caePb3.Scfld02_0     C 0 I 403
e caeJap4.Scaffold4951    14682 788 -   152553 I

a score=-1421.000000
s ce10.chrX             2250947 3 + 17718866 GAA--
s cb4.chrX             13725533 3 - 21540570 --AGa
i cb4.chrX             C 0 I 779
s caeRem4.Crem_Contig0  4470038 3 +  4500979 --ACC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    22064 3 -   128984 --ATA
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2984787 403 -  4147112 I
e caeJap4.Scaffold4951    14682 788 -   152553 I

a score=-1077.000000
s ce10.chrX             2250950 36 + 17718866 -AACGTTGAAAAGGCTGAAAAACAATGATAGAA-----------------------GCTG
s caeRem4.Crem_Contig0  4470041 33 +  4500979 TGCAATTGAAAGAGC----AGAGACTAATAAAG-----------------------Gctg
i caeRem4.Crem_Contig0 C 0 I 457
s caeSp111.Scaffold576    22067 56 -   128984 CACAATTCTCAGTGC----AAAGTATAACCgagaaataagagaaaacaaattccATGATG
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2984787 403 -  4147112 I
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13725536 779 - 21540570 I

a score=2366.000000
s ce10.chrX             2250986 279 + 17718866 GGTGAACGAAATAATGAGTTTTGTCTGATAACGGTATCACTATTGAATTTCGCCGATTTCTATCAGAGCAACTGAAAGAAAAAATCAGTGAGTATGAGAGTACCGAAAATTCTCAAG-TTTTTAGAAATCAACGAAACCATTCCCAGAATGTGTGAAAGATGCCTAG--------------------------ATTTGACGCAAGTAGGTGAGAAAACAT--TGCCGATCAGAC-------------------GACTAAAAAAAACTAAAAACTGGAAACTTGATCCTGTTTGTTGCCACAAAAAATTTTCTTTTCCGAATATAGAA
s caeSp111.Scaffold576    22123 280 -   128984 Agt-atcgaaaaaatga--ttaatttGATAAATTTATT-------GGTTTCTTTGATTCATAGAA----AACGGATACAAAAGATTACCAAG------------AAAAGTTCTCATGATTCTTAATAATC-ATGAAA--ATTCTC---ATGTATGAGATATGTATAACAGGAACCGAAAAAGCTCAGGTCAGTATTTGACGTAAGATTGTGTGAAAGTTTCATAATGATCAGACTGGCCAATGTCCACTTcatgaataagaaaaacag------gGTAATCTGATCTTGTTTGTTTCCAGAAGAA---------TCCGGATaaaaaa
i caeSp111.Scaffold576 C 0 I 112
e caePb3.Scfld02_0      2984787 403 -  4147112 I
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13725536 779 - 21540570 I
e caeRem4.Crem_Contig0  4470074 457 +  4500979 I

a score=0.000000
s ce10.chrX             2251265 1079 + 17718866  
e caePb3.Scfld02_0      2984787  403 -  4147112 I
e caeJap4.Scaffold4951    14682  788 -   152553 I
e cb4.chrX             13725536  779 - 21540570 I
e caeSp111.Scaffold576    22403  112 -   128984 I
e caeRem4.Crem_Contig0  4470074  457 +  4500979 I

a score=516.000000
s ce10.chrX             2252344 21 + 17718866 agaaccat-tCTCTTATGGACA
s caePb3.Scfld02_0      2985190 22 -  4147112 agaaacatattttttgtcgACT
i caePb3.Scfld02_0     I 403 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13725536 779 - 21540570 I
e caeSp111.Scaffold576    22403 112 -   128984 I
e caeRem4.Crem_Contig0  4470074 457 +  4500979 I

a score=2217.000000
s ce10.chrX             2252365 98 + 17718866 -----AATTAAGAATAAACTAAA-----TTCCGGGAAGTTGAGCTTTGGAA--GCGG-------CTCAGTTTCCGGCAAATGGAGT-AAACCAATTATATTCTCTGGTTTTTCCTGAC
s caeRem4.Crem_Contig0  4470531 99 +  4500979 -----AActaagaaaaa---aga-----ttgaagGAGGAAGAACATAGGAAAAGCGGCGAGTCTCTAAACTTCCGGC-AATTGggtgaaaataattattttattctgcCCGTT-----
i caeRem4.Crem_Contig0 I 457 C 0
s caePb3.Scfld02_0      2985212 95 -  4147112 AATTAGactaaaaataa---gaaattcttTGA---AGGAAGAACATAGGAAAGCCGGGGAGTTTTCAAACATCCGGC-AATCAAGT-AAACCAATTAGTTTGT---------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13725536 779 - 21540570 I
e caeSp111.Scaffold576    22403 112 -   128984 I

a score=-1080.000000
s ce10.chrX             2252463 1 + 17718866 G-
s caeRem4.Crem_Contig0  4470630 1 +  4500979 -T
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    22515 1 -   128984 G-
i caeSp111.Scaffold576 I 112 C 0
s caePb3.Scfld02_0      2985307 1 -  4147112 G-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13725536 779 - 21540570 I

a score=28574.000000
s ce10.chrX             2252464 68 + 17718866 TTTGT----TTAAGTGTAAACAAACCGAACAGTTTGTTTACATGAAAA-CGCAGCA---TTT-------TAATATCACCTGCA
s cb4.chrX             13726315 75 - 21540570 TTTGT----TCCAGCATAAACAATTCAAACTGTTTGTTTATTTAAGAA-TTACGCG---TTTTTTATTCTGATTGCACCTGCA
i cb4.chrX             I 779 I 77
s caeRem4.Crem_Contig0  4470631 70 +  4500979 TTTGTGTGAGCCACTATAAACAATCTGAACGGTTTGTTTA--TGAAAA-CGACGCG---TTT-------CGATTGCACCTGCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    22516 67 -   128984 TTTGC----TTCAGAATAAACAATTTGAACGGTTTGTTTA--TATGAACCAGCGCG---TTT-------CAATTCCACCTGCA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985308 70 -  4147112 TTTGT----TTCAGTATAAACAAATTGAACGGTTTGTTTA--TGAAAACCGACGCAATTTTA-------TGATTGCACCTGCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I

a score=5892.000000
s ce10.chrX             2252532 160 + 17718866 ACGTCAAGGATCATAAGGAAGCGAATAAA----------------------GACAAAGAACCAGAAGCTAGGAATCAGAACTAAGTTTTTCAGAGGTACAGATGTTTTTTGTAACATTTCTTTGTAACAT------TTCACTGCTTCATAGGAAGTTGATTGTGATCAT------------------------------GGAAACATGATAGAGAACa-----
s caeRem4.Crem_Contig0  4470701 138 +  4500979 GAATCAAGGATTATAAGGAAGGGAAATAGTGGGAAACAATGAAACAATTGTGACAAGACATCAGAAACTACTAATcaagattcaattttttagatgt----atgttttatg-------ttttttttgagt--------------------------------tgatgaa--------------------------------caaaaaagaaga----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    22583 190 -   128984 AAGCTAAGGATCATGAGGAAGGGAAGAAgtggaaaacaatgaaaccagattaacaaaaaaccagaaactac-----------ttccttttttgattt----ctgttttatg------CTGTTACAGGGataaaacattcaaaagtttAGAAAA-------TGTGATGAGTAACCTTTACCGGTTTTTTGTAACTTATCAGCAAATCAAGCGGAAAAGA-----
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985378 170 -  4147112 GAATCAAGGGTCATAAGGAAGGGGTTaagtgaaaaacaatgaaactaGAATCATAAGACATCAGAAACTACTAatc-agcgtttttttttcggattt----atGGTTTATG-------TGTTTTATGCAT-----ATTTAATGCTCCGTCAGA-------GATGATAAA-----------------------------GGTGAAAGAAGCGGaagaaaacgtt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e cb4.chrX             13726390  77 - 21540570 I

a score=-241.000000
s ce10.chrX             2252692 10 + 17718866 aaaaaattaa
s cb4.chrX             13726467 10 - 21540570 AGAAATTTCA
i cb4.chrX             I 77 C 0
s caeRem4.Crem_Contig0  4470839 10 +  4500979 agaaatttag
i caeRem4.Crem_Contig0 C 0 I 77
s caePb3.Scfld02_0      2985548  8 -  4147112 tgaaaaaa--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e caeSp111.Scaffold576    22773  0 -   128984 C

a score=-8320.000000
s ce10.chrX             2252702 34 + 17718866 aattataaa--------------ataGAGCTCAAAAATATGGCAGTGT-------
s cb4.chrX             13726477 41 - 21540570 AGTCATGAG--------------TTACGATTTGAGTTAAACCAAGTATAGcgtga
i cb4.chrX             C 0 I 4
s caeSp111.Scaffold576    22773 13 -   128984 -----------------------TTTTTCTAC---------------CTAT----
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985556 51 -  4147112 agtcttgAGTCAGTtatcataactttttcttcaggTTTCTTCCAGTTCTGC----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I
e caeRem4.Crem_Contig0  4470849 77 +  4500979 I

a score=-1290.000000
s ce10.chrX             2252736 10 + 17718866 AAA--AAAAA---------------CA
s cb4.chrX             13726522 10 - 21540570 aga--aaaag---------------ca
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0  4470926 10 +  4500979 aga--aaaca---------------ga
i caeRem4.Crem_Contig0 I 77 C 0
s caeSp111.Scaffold576    22786 10 -   128984 AAA--AAGcg---------------cc
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985607 27 -  4147112 AAACCAAACGGAACGAATTTTtatacc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    14682 788 -   152553 I

a score=126159.000000
s ce10.chrX             2252746 252 + 17718866 AAAAAAGCTAAAAAAGAAACAAA--------------CTTCAATTTGAAATTCC-AA---AGCAAAAAGTATAAGGTTTC----GGGTAGGAAAAACACAATGAAGGGTGTCGTGTGAGT------GTGAAGGACATGCACACGGTTGGCAGCAGATTAGATAG----------CT---------CTTCTCTCCATTGTGGAATTATTCAAGACCA--CAGCTCATCGCGAGC--------TTGCG-------CGACTTTTT-GTGAGT--AAGA--AAAGGCACTTTGAAAGT--GAGAAATTCGG--------AAGTGGCAA------AAAAAAC
s cb4.chrX             13726532 303 - 21540570 aaagaacCGGCACACACACCAGa------aaaaaaCCTCCtaatttggaattcagaagcgCGACAGAAGTAAGAGGTTTTCGGGGTGTAGC-AGAGCACAAAGAAGTGTCTCATGTGTGA------GTG-------CTGACACGGTTGGCAGCAGATTAGATAGTGTAGCTCTTCC---------CCTTTCGCTGTTTGGGAATAATTCAGAACCACGCGGCTCATCTTGAGAAGGATTTTTGCCTTCTTCGCCGATTTTTTCGT--TT--AGGGT-AAAGGCACTTTTAAAGTAAGAGAAAAACGTTTATTTCCAAGTGGTGAGAGATGAGGAAAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4470936 261 +  4500979 aaaaaagggtaagaaaaaacaaagttgacaaaaaacctcctgatttggaattcaaaa---cga-aaaagtacGAGGTTT-----GGGTAGT-GGAGCACAATGAAGTGTGTCGTGTGAGT------GTGAAGGACACGTACACGGTTGGCAGCAGATTAGATAG----------CT---------CTTTTCTCTATTGTGGAATTATTCAAGACCA--CAGCTCATCTTGAGG--------CGCCT-------CGACTTCTT-GT--TT--AGA---AAGGGCACTTttaaagt--gagaaaaatgt--------aagtggaga------aaaaaac
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    22796 249 -   128984 aaa----------aaaaaacaaaactcagtgaaaaacttctaatttggaattca-aa---GGCAAAAAGTACGCGGTTTC----GGGTAGT-GAAGCACAATGAAGTGTGTCGTGTGAGT------GTGAAGGATAC-TACACGGTTGGCAGCAGATTAGATag----------ct---------cttttctctattgtGGAATTATTCAAGACCA--CAGCTCATCTTGAGG-----------CT-------CGACTTCTT-GT--GT--AGAG--AAAGACACTTTAAAACT--GAGTAATTTTA--------Aagtaaaga------aaaacat
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985634 259 -  4147112 aaaaaaag---agaaaaaacaaaacctggagaaaaaCTTCTTATTTGGAATTCAGAA---GGCAAAAAGTATGAGGTTT-----GGGTAGT-AGAGCACAATGAAGTGTGTCGTGTGAGT------GTGAAGGACACGTACACGGTTGGCAGCAGATTAGATAG----------CT---------CTTTTCTCTATTGTGGAATTATTCAAGACCA--CAGCTCATCTTGAGG-----------CT-------CGACTTCTT-GT--GTAAAGGG--AAAGGCACTTTTAAAGT--GAGAAAATTGT--------aagtggaga------aaaaatc
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    15470 238 -   152553 AAAAAAGG---ACAAGCAACACA--------------ACCAAATTTGGAATTCA-AG---AAGAAAAAGT-CGAGTTTT-----G------------ACAATGAAGTGCGGCGTGTGAGTGCGAAGGTGAAGGACACGCACACAGTTGGCGGAATATTAGACAC----------CTTCACCTCGCCTTCTTCCTATTGTGGAATTATTCAAAAACC----------CCTGCG------------CT-------CACCGGCTT-GT--GT--AGGATGGATGGTactttaaaaga--aaaaaaaaacg--------aaaacgaaa------aaagaac
i caeJap4.Scaffold4951 I 788 I 1024

a score=-5591.000000
s ce10.chrX             2252998 16 + 17718866 AGGCAACAGAAAAAAC----
s cb4.chrX             13726835  9 - 21540570 A-------GAGAAAAC----
i cb4.chrX             C 0 I 1563
s caeRem4.Crem_Contig0  4471197  1 +  4500979 a-------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23045  9 -   128984 --------tcgaaaaaa---
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2985893 16 -  4147112 a----acgccgaaaaaaaac
i caePb3.Scfld02_0     C 0 I 103
e caeJap4.Scaffold4951    15708 1024 -   152553 I

a score=0.000000
s ce10.chrX             2253014 11 + 17718866 GTTCGTAAAGA
e caePb3.Scfld02_0      2985909 103 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13726844 1563 - 21540570 I
e caeSp111.Scaffold576    23054  0 -   128984 C
e caeRem4.Crem_Contig0  4471198  0 +  4500979 C

a score=-4589.000000
s ce10.chrX             2253025 108 + 17718866 AAGCCACGTTGAGCTCCTATAGCTCCAATAATCCAAGGATTGAGGGTTTATTTTGATAGAAAAATATATAATAACTTCTAAAATCTGCATGAGCAAGTTTCATTTCTG
s caeRem4.Crem_Contig0  4471198  32 +  4500979 -----------------cacgG----GATAAGC-----------------------TGGAAA--------------------------------AAGTGCGGTCTGTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23054  38 -   128984 -----------------aatggttttggagagc---------------------aaaagaag--------------------------------aagtggcgTCTGGG
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2985909 103 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13726844 1563 - 21540570 I

a score=-29697.000000
s ce10.chrX             2253133 251 + 17718866 TTTCAAATTTAGTTGAGGAAAC-----------TTTCAAAATTAGAATAGATATGCTTCAAGAAGTAAATTATTAAGACCACTCAACCATAATGCTTAACAAGTTGG---AAAAAGTAGGGATT----------TTTCAA--AGAGTTTAAGCTAACAA-ATTTAGACATTTTTGAAATAGGCCT-GTAAAGTTCGCCCGG--TTATgtatgaaattattcataaaca---ttttttcaattttgattgt-----------ttgaacaactagcttc------taacttcagctattcaac
s caeRem4.Crem_Contig0  4471230 157 +  4500979 ---------------------------------TTTTAAAATAAGACCAA----GCTT-----------------AGAAGATTTGACTAGGAT----GGTGACATGG---AACACAAAATATTTCACGCTGATATCACATACAATGAACGAACaga----agttttgca------aaaaaattat-gtga--------caaattcatttttc----gatttaatCACTaggttcaaaaaat------------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23092 180 -   128984 ---------------------------------TTTTAAAT-----------------------------------GGAACCGTTGCTAAACTTCTgggagtttttggaaaacatgaGGGTCTT-GGGTGTTCATTGGAAACAAAGTTTTAAGTGA----AGGGTGGCA-----GAGAAAGCTCT-ATGA--------TAG--TTATCTTCT---------AGAACCT---TTTTGCAAAT--------------------GCAAATAGGGAGTTGTACACAATAGCACAAACCTTTGAAT
i caeSp111.Scaffold576 C 0 I 8
s caePb3.Scfld02_0      2986012 230 -  4147112 cttgaaatttcg-------aacttGATGGTGTTTTTTAAATAGAG-------------------------------GGAGATGTAAAAAAGTTCTTCCGAAATATTG---AACAAGAGGAGCTT----------TAAAAATCGAAGTTTCAAATGATAATAGATCATCA-TTCTGGGAGAATTCTGACGA--------CAG--tggtttttcaatcaattgaaaaact---ttctgaaaaccttGTCTTACCAAAgcgatagaaaaaaaagagcttt------ttgCTTACGTTTTTCAGC
i caePb3.Scfld02_0     I 103 I 31
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13726844 1563 - 21540570 I

a score=-2048.000000
s ce10.chrX             2253384 36 + 17718866 tgatatcataatttgcaaactgtaatttgcgaaaat----
s caeRem4.Crem_Contig0  4471387 20 +  4500979 aaatatcatA------------TAATT----ACAGT----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23280 14 -   128984 ----------------------TAGTT----TCAACATTC
i caeSp111.Scaffold576 I 8 C 0
e caePb3.Scfld02_0      2986242 31 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13726844 1563 - 21540570 I

a score=-35446.000000
s ce10.chrX             2253420 285 + 17718866 acagaagaattgatttttaTTATATTTTTAACAATTGTGAGCCGATTTCAT---TAGTACGAAATTGAA-----------CATA--------TTATACAAAAAAAATTCTTAACATGGATAGAAAAAATAATTTTGAGTTAAAAAAGT--TCCCAGCATGAGAAATTCTAAGAAACAATT------ACGAGATCTTTTCTAGCACCTATCAATTGAACGAAACAACTTGAGTCCAAAAATTTCGTGTTTTTTTAGATTTTCCTAGGGTATTATTAAATACT-AGAAACATGTTAAAGTGAACTAGAACACACATCA
s caeRem4.Crem_Contig0  4471407 137 +  4500979 ------------ATGCATA-------------------GACCAACATTAACAAAGTTTTTAGAAACGA------------------------TCAAGAGAACAagattgt-------gaaaaaaacagaaa------attgaaccAAT--------------GAAACATGAGTATCATCT----GAATGACACAGCTTTGTAAATAC--------------------------------------------------------------------Aattcctaa---------gaagtta----------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23294 223 -   128984 -----ATAatggattttta-------------------gaatcaatttcac---gtttttgaatgataa-----------tATCTGagttt-ttctgagaataaaAC-----------CAAAAGTTTGAAGtgttctatttcaaaaatataccAATCATAGAGAAACCGTATCagcatttttaattttgttgaAGTTTTATAAATCCTTCACTATAATAA---------------AAA-------------tcggatttt-----gaaaacaataaatagC-AA---------TAAATAGTCTATCATATCAGCCA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986273 225 -  4147112 ----------------ACA-------------------GAAGTGGATTTAT---GTCTTGGAAATGGAAGACCACAAAGCCATCAGCATCTGTTCAGATAACTtaatatt-------gcaaaaaaaaatgatttttgaattgacaAATTCGATATTCAGACTGAATACTACCTATCAATT---ACTGCCATGATACTTTGAACAACCGCCACCGCAATTATTCA--TTTAACCTTAAA-------------ACGGAAtct---------------aattcc-aa---------aaaatcatcgcTC---TTCGTCA
i caePb3.Scfld02_0     I 31 C 0
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13726844 1563 - 21540570 I

a score=15137.000000
s ce10.chrX             2253705 76 + 17718866 CTTTTGTCGCTATAAAATGTGGATCTTC----------GTAAAAAAGGAAACAAGAGCATAGT-------------TGAGTGGATTATCAAATTAAAAA
s cb4.chrX             13728407 99 - 21540570 ctttttattctgCAACTTATTGATCTTCGACTTTAGAGATAAAAAGATGAGGAAACATGTGTCCAGAAGGAAGAATTGAGAGAATTAACaaattaaaaa
i cb4.chrX             I 1563 I 1
s caeRem4.Crem_Contig0  4471544 87 +  4500979 --------tctgT--TTTCATGACATTAGATCTTCGAGTTaaaaaaaGTAGGAAGCGTGTGCCCTTGACTGCCA--TGAGTGAATTAGCGAATTAAAAA
i caeRem4.Crem_Contig0 C 0 I 67
s caeSp111.Scaffold576    23517 75 -   128984 TTTTCGTGTTTTAGACATGAGGATCTTCGACTT-----ATaaaaa-------aaGCATGCTTCC------------CAGGCGAATTAACGAATTAGAAG
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986498 82 -  4147112 CTTTTATCTTCGAAACATGTGGATCTTCGgctt-----ataaaaaaagaaggaagcgTGTGTCA------------AGAGTGAATTAGCGAATTAAAAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    15708 1024 -   152553 I

a score=-1413.000000
s ce10.chrX             2253781 67 + 17718866 TTAAAAGTTGGTCTAC--ATACTATTAACAAGATCTTTGAATTCCATGTT--TCACTGAATTCTAAAATTC
s cb4.chrX             13728507 61 - 21540570 tttaaa--ccttcttcaaaaactttt--cttgatCTATGCTCTTCTTTTTGGTTACGTTTTTCTA------
i cb4.chrX             I 1 C 0
s caeSp111.Scaffold576    23592 47 -   128984 ---------TGTCTTC--GGACATCT--TTTGATCTatgctctctttttc--taacgGATTT---------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986580 44 -  4147112 ---------TGTCTTC--AAACTTTA--CTTGATCTATGCTCCCGATTCT-----CGAATTC---------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e caeRem4.Crem_Contig0  4471631 67 +  4500979 I

a score=-121.000000
s ce10.chrX             2253848 10 + 17718866 TACCAGGAAA
s cb4.chrX             13728568 10 - 21540570 TACCAGGAAT
i cb4.chrX             C 0 I 37
s caeRem4.Crem_Contig0  4471698 10 +  4500979 TACCaggaaa
i caeRem4.Crem_Contig0 I 67 I 11
s caeSp111.Scaffold576    23639  3 -   128984 TTC-------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986624  6 -  4147112 TACCAT----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    15708 1024 -   152553 I

a score=0.000000
s ce10.chrX             2253858 1 + 17718866 T
e caePb3.Scfld02_0      2986630 0 -  4147112 C
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13728578 37 - 21540570 I
e caeSp111.Scaffold576    23642 0 -   128984 C
e caeRem4.Crem_Contig0  4471708 11 +  4500979 I

a score=2343.000000
s ce10.chrX             2253859 18 + 17718866 ATTACAAACAAGGAAACA
s caeSp111.Scaffold576    23642 12 -   128984 ------AACAAGGAAATA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986630 12 -  4147112 ------AACCAGGAAATA
i caePb3.Scfld02_0     C 0 I 25
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13728578 37 - 21540570 I
e caeRem4.Crem_Contig0  4471708 11 +  4500979 I

a score=-248.000000
s ce10.chrX             2253877 2 + 17718866 CA
s caeSp111.Scaffold576    23654 2 -   128984 GT
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2986642 25 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13728578 37 - 21540570 I
e caeRem4.Crem_Contig0  4471708 11 +  4500979 I

a score=-1770.000000
s ce10.chrX             2253879 28 + 17718866 TCAAATTGATAACTTGGCCCATAGGAGT------
s caeRem4.Crem_Contig0  4471719 28 +  4500979 tcaacttGA-----ATGTTCAT-TGAGTATCAAT
i caeRem4.Crem_Contig0 I 11 C 0
s caeSp111.Scaffold576    23656 11 -   128984 ------------------TCAT-TGAGTAT----
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2986642 25 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I
e cb4.chrX             13728578 37 - 21540570 I

a score=-1994.000000
s ce10.chrX             2253907 1 + 17718866 T-
s cb4.chrX             13728615 1 - 21540570 -T
i cb4.chrX             I 37 C 0
s caeRem4.Crem_Contig0  4471747 1 +  4500979 -A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23667 1 -   128984 C-
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2986642 25 -  4147112 I
e caeJap4.Scaffold4951    15708 1024 -   152553 I

a score=8038.000000
s ce10.chrX             2253908 42 + 17718866 TTTA-TTTGTTGAATATATAAAC-GAGTTGTGTTGTGTTAGGTA
s cb4.chrX             13728616 36 - 21540570 TACA-TTAACTGA--GTATGAATAGTAGGTTATTATA-----TG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4471748 35 +  4500979 TTTC-TTTATTGA--ATATGAAT-GAGGATAGTTATA-----TG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23668 40 -   128984 aata-tttattga--atatGAAT-GAGCCTTGTTATAAAAAATG
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986667 40 -  4147112 -TTACTTCGTTGA--ATATGAAT-GAGGGTTGTTATACTAGGTG
i caePb3.Scfld02_0     I 25 C 0
e caeJap4.Scaffold4951    15708 1024 -   152553 I

a score=138020.000000
s ce10.chrX             2253950 570 + 17718866  
s cb4.chrX             13728652 546 - 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4471783 587 +  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    23708 567 -   128984  
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2986707 563 -  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    16732 552 -   152553  
i caeJap4.Scaffold4951 I 1024 I 34

a score=-1117.000000
s ce10.chrX             2254520 37 + 17718866 T---GACCGACTTGCTGGCCATTTTTCCCTCTGA-------AACGTG
s cb4.chrX             13729198 24 - 21540570 ----GAACCAATCGTT-TCATTT------------------AGAATG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4472370 32 +  4500979 T---GAACCAAttgttctcaatttctcaa------------aaattt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24275 44 -   128984 T---AAGCCAATTGtgctttctctttcaaaatgagaaagagaaaatg
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987270 40 -  4147112 CACAAAACCAATTGTTCTCCCCttttttgagcga-------aaattC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    17284 34 -   152553 I

a score=23797.000000
s ce10.chrX             2254557 29 + 17718866 ATAATTAACACGTTC-----AATTGTCACGTTTC
s cb4.chrX             13729222 29 - 21540570 GTAATTATCACGTTC-----AACTGTCACGTTTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4472402 29 +  4500979 ataattttcacgTCT-----CACTGTCACGTTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24319 29 -   128984 ataattatCACATAG-----AATTGTCACGTTTC
i caeSp111.Scaffold576 C 0 I 51
s caePb3.Scfld02_0      2987310 29 -  4147112 ATAATTATCACGTTC-----AATTGTCACGTTTc
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    17318 34 -   152553 ATAATTATTATGTTCACCGAAACTTTTATGCTCT
i caeJap4.Scaffold4951 I 34 C 0

a score=-1418.000000
s ce10.chrX             2254586 2 + 17718866 AT-
s cb4.chrX             13729251 1 - 21540570 -C-
i cb4.chrX             C 0 I 4
s caeRem4.Crem_Contig0  4472431 1 +  4500979 -T-
i caeRem4.Crem_Contig0 C 0 I 92
s caePb3.Scfld02_0      2987339 1 -  4147112 -t-
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold4951    17352 2 -   152553 -TC
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576    24348 51 -   128984 I

a score=-3767.000000
s ce10.chrX             2254588 16 + 17718866 AATTCATAA-------------TTCATAT
s cb4.chrX             13729256 12 - 21540570 AG----AAA-------------TTGGCAT
i cb4.chrX             I 4 I 75
s caePb3.Scfld02_0      2987344 13 -  4147112 aaatacaaa-------------atgt---
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951    17354 29 -   152553 AAATTCTaagaaaaggttttttttcacat
i caeJap4.Scaffold4951 C 0 C 0
e caeSp111.Scaffold576    24348 51 -   128984 I
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=-999.000000
s ce10.chrX             2254604 13 + 17718866 ATTTACTATTCAC--
s caePb3.Scfld02_0      2987357 13 -  4147112 tGGCATCATTCTC--
i caePb3.Scfld02_0     C 0 I 49
s caeJap4.Scaffold4951    17383  9 -   152553 ------ttttttcaa
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13729268 75 - 21540570 I
e caeSp111.Scaffold576    24348 51 -   128984 I
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=-647.000000
s ce10.chrX             2254617 58 + 17718866 AGATAACTAATACCAAGGTCAAGCGAGAGCAAAAGTTGCACGAAGAATTGCATTGCAG
s caeJap4.Scaffold4951    17392 42 -   152553 agtta-------------ccaaggaaaaaccgaaatttttttaaaattctttttg---
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2987370 49 -  4147112 I
e cb4.chrX             13729268 75 - 21540570 I
e caeSp111.Scaffold576    24348 51 -   128984 I
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=861.000000
s ce10.chrX             2254675 14 + 17718866 GTTTATTGCAACAC
s caeSp111.Scaffold576    24399 14 -   128984 ATTCATTAGAATAT
i caeSp111.Scaffold576 I 51 C 0
s caeJap4.Scaffold4951    17434 10 -   152553 ----atttcaataa
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2987370 49 -  4147112 I
e cb4.chrX             13729268 75 - 21540570 I
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=-2889.000000
s ce10.chrX             2254689 22 + 17718866 -GGGCAAGCAGAAAATAAGGGAA
s cb4.chrX             13729343 15 - 21540570 -GGGTAAGCATAACAT-------
i cb4.chrX             I 75 C 0
s caeSp111.Scaffold576    24413 22 -   128984 -AGGTTCGTGGAATCGGAAACGA
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951    17444  7 -   152553 aagatta----------------
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0      2987370 49 -  4147112 I
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=1045.000000
s ce10.chrX             2254711 9 + 17718866 AAGTGATGG
s caeSp111.Scaffold576    24435 8 -   128984 -AATGACGC
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987419 9 -  4147112 AAATGACGC
i caePb3.Scfld02_0     I 49 C 0
s caeJap4.Scaffold4951    17451 7 -   152553 aaataat--
i caeJap4.Scaffold4951 C 0 C 0
e cb4.chrX             13729358 0 - 21540570 C
e caeRem4.Crem_Contig0  4472432 92 +  4500979 I

a score=52499.000000
s ce10.chrX             2254720 137 + 17718866 CATGCGAAATAATGAGAAATCCATTTAATTTGGTTGGTGTGAAGAAAACAAAAAACAAGAAAAGTTTGTGACAAGCTCTAGTGCAGAAACAGAAGCAGAAACAAACTTGTAACTTGAAACTCGATGTTCAAAGCTCA
s cb4.chrX             13729358 114 - 21540570 CGCTGGAATTAACGAGAAATCTTGGCCGCCGATGGAGGGAGAAAATAATGTAAAA--------GTTTGTGACAAGATGC---------------ACAGAAACCAACTTGTAACTCGAAACTCGATGCTCAAAGCTCa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4472524 103 +  4500979 CTCGCAAATTAatgagaaatctttttttccgggatggaagaaaaatgggaaaaaa--------gtttgaggCTAGG--------------------------AAACTTGTAACTTGAAACTTAATGTTCAAAGCTCA
i caeRem4.Crem_Contig0 I 92 C 0
s caeSp111.Scaffold576    24443 107 -   128984 CGCGTGAATTAATGAGAAATCTATTCTTCCtagatggaagaaaaataaagaagagt-------ttttgtGG-----------------------GCAGAAACAAACGTGTAACTTGAAACTAGATGCTCAAAGCtcg
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987428 116 -  4147112 CGCGTAAATTAATGAGAAATCTCCTC-TCCTGGacggaagaaaaattaaaaaaagc-------gTTTGTGACAAGTTGCAGT------------GTAGAAACAAACTTGTAACTTGAAACTCGATGTTCAAAGCTC-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    17458  99 -   152553 ------aaaaaatgagaattcgttttGTTCGGTA------------AAAGAAGAA--------GTTTGCGGCACGCACCAAA------------GCAGAAACAAACTTGTAACACGAAACTCTTTGCTCAAAGCTCA
i caeJap4.Scaffold4951 C 0 I 161

a score=21705.000000
s ce10.chrX             2254857 109 + 17718866 CGAGTAGAT-GAAAAAGTGAT-----------------------GAACAAATTGCCGATTAATCTACACACTTGACAGTGTGaaataaaaaaaataaaaacttaataaaaattttatttgaataataaaaaaa
s cb4.chrX             13729472 125 - 21540570 cac--agaa-aaaagtgtgttttttttcttgctccaCGATGAGAAAGAAAGTTGCTGATTAATCT----ATTCGACCAATTAGAATGAGAATGAAAACATGTTGTTGTTCa-gtcatttgaaaaagaagaaag
i cb4.chrX             C 0 I 214
s caeRem4.Crem_Contig0  4472627  99 +  4500979 AAC--AAAAGAGAAGAGTGAT-----------------------GAGAAAGTTGCTGATTAATCT----ATTTGACCAATT---ACTAGAA-AACAACATGTTTTTATGCa-gtcaattgaaaaaaaacgaag
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold576    24550  90 -   128984 tga--aaaa-agaagagtgat-----------------------GAAAAAGTTGCAGATTAATCT----ATTTGACCAATT---ACAACAGAAAT-GCATGTTTATGTTCa-ctcaattgaaaaa--------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987544  95 -  4147112 -------AC-TGGAAAGTGAT----------------------GGGAAAACTTGCTGATTAATCT----ATTTGACCaatt---aatagaaaaataacatgtttttgttca-ctcaattgaaaaaaaagaaaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    17557 161 -   152553 I

a score=-24783.000000
s ce10.chrX             2254966 162 + 17718866 ttGTGCTTATTTACAGCTTACAATGTACTTGTGAAGCCCTAGGGAACTGGAGTCGGAATATTATTT----------------------------------------------------------------------TAAAATGTG--GAAAAAAGTGTGATAGACTCATGTAGAGTAAAACTTTTCAAAACAGCTTTTAAAGTT-------TTTTTTTCAAAAAGCTGCA----------ATCACTGAATT
s caeRem4.Crem_Contig0  4472727 135 +  4500979 caACGAATAATAACTACATTCTATG-------------AGAGAATATT----CCggactatttttc----------------------------------------------------------------------agagatcttcTAAGAAAACTCAAATTAAGGATATTTGAATTAACTTACTTAAAAC------TAAATTA----------------AGGAATAACA-------GGTATAACATAAAT
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold576    24640  39 -   128984 ---------------------------------------gag----------------------------------------------------------------------------------------------agaga------gagaaaatg----------------------------------------------------------------aagagtgaaa---------aattggtcaaCT
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987639 217 -  4147112 ---tgtaaaataatAATTCTCAATG--------------GAGGCAATT-----TAGAATATTTTCTAGGCTTCAGGATGTCGCCTTCTGTTTTCTAGTTCCTTATAGTCAGACATCAGTCGGtaagaaaatattcagaaga------aaaaaaatggcgttttcgaattttagcattcagttcgaaaaaac------caaagtttaaTGAAgtgcttttcaaaaataaaacgagcTGTGGATTAATTAACT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    17557 161 -   152553 I
e cb4.chrX             13729597 214 - 21540570 I

a score=-7117.000000
s ce10.chrX             2255128 10 + 17718866 TTTCCAAGTT--------------------------
s cb4.chrX             13729811 10 - 21540570 TTGTCAAGTT--------------------------
i cb4.chrX             I 214 C 0
s caeRem4.Crem_Contig0  4472862  9 +  4500979 -ATTTCAGCT--------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24679  7 -   128984 -------GTT-------------------CCAG---
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2987856 29 -  4147112 -------TCTAATACGATAAATGATCAGAccaaaat
i caePb3.Scfld02_0     C 0 I 125
e caeJap4.Scaffold4951    17557 161 -   152553 I

a score=-9484.000000
s ce10.chrX             2255138 49 + 17718866 ------------------TTGGGAAAACTTTTGCACTGTCACATACTTCTGAAAA--------AAAGCTATTTTG
s cb4.chrX             13729821 74 - 21540570 TTGGAGTGTATTTAAAATATCGGCAAAAAGTTGAACGACcagaaattattaaaaaattttgtgaatgcgATGTT-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4472871 42 +  4500979 TTG----------AAATCATGAAGAGAAAATTGca-----------taccaaaaaa-------aaagcaa-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24686 10 -   128984 ------------------------------------------ACATCTCTAA-----------------------
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2987885 125 -  4147112 I
e caeJap4.Scaffold4951    17557 161 -   152553 I

a score=-61256.000000
s ce10.chrX             2255187 213 + 17718866 TTCATTTCGGCACCGCTGGTGCTACTCCATCTTTGAATTA---------------------------------------GCAAACAGATTCTAAAC----------TCGAGAGCTTCAAA-----AAATTTTAGTAAAAGGTATAGGA---------------------TATGCTATGAGCAATATATTAGAAACACTAGTTCTCAAATAGTTTGTTAATTTAAAAAA-------AATCCAGAAAA--AATTT-----CAAACTTTCAA------ATA--------AAACTGAGTCACAA----GCCATTCTTACTTCAC
s cb4.chrX             13729895 255 - 21540570 -----------ACCGCT-------CTAGATCTGTTTCACaacttccgaaattt---------------------tgaaaattattggaaCCTTAACAGCTGAATTTCCGGCTActaaaaatggtcgaaatggataaaaacgaaatgaaaaatacaatCTCATTGGCCGGTACCGGATGGGAA----gtcaaaaagatgaa-----aaa------gtcAGACTGAGAAA-------GATTGTCAGTC--TAAATATAACTatattttcaaagcaaaatA-CAAACGGGAATTGCGTCACCGATACTAC-TTGCAACTCTAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4472913 121 +  4500979 ------------------------ctcAATC----------------------------------------------AAGCACTCATAAACttaaaaacatatatttaGGCCACT--------------------------------------------------------------------------------------------------------TTTGATAAC-------AAttgtctttt--tgatt-----tttatttgatGGAGAAAAT------TGTAAATTGCATCAGTG----CGC-TTGCTCCACTAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24696 116 -   128984 -------------------------------------------------------------------------------CTAGTGAGACTCTAGTT------------------CAGAAATGATCAA-------------------------------------------------------------------TTCTAT---TCGAA------GCTA-TTCAgagaa-------aactatcaaaa--tgaCC-----TCAACCGT-----TACTAGA------GGAAGATACGTCACTA----GTT-TCTCCGTTTAAA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988010 243 -  4147112 -------------------------TTCATTCATCAAATAACTCTGGGATTGTCACCGACAGAAATATCTCAgctaaaaataatcatagcCAAATT-----ATTTATCGAATaccacaaaaaatcaaatttcggtAAGATTGTAAGTA---------------------TTTTGGataaacc----gttaaaacttttaa---tcgaa------at---ttcaaaaaataataataaatatcaaaatttagtt-----caaatTGTTGAAATACTATATCGTTTGCAAATTGCGTCACTT----GTC-TCACTCCTCTAC
i caePb3.Scfld02_0     I 125 C 0
e caeJap4.Scaffold4951    17557 161 -   152553 I

a score=74729.000000
s ce10.chrX             2255400 307 + 17718866 AAAGTGCAGACAGTT-----------AGTTTTC----AAAAATCAACAGATAAGCTTTTTTT--GCAG-----GGGGTGAATGAGCTAACA-AAAAATATATATCTTTGCCGTGGGCTCGCTAAATGACTTGTACAAACACAGAGCGGGTCAGCATGCAAGCAGGAGCAACAGT-----CGGCAGAAAAAGTTTCA-AAATTG--TTTT------------AATTTCTTATCATT-CGAGAAAATCAAA------------TAAATCGGATTATC----AATAGCAAC----TGTTAAATAGAAAGGGACAGAAACATCTATTTTTAAAAAAGTTTTGC-AAAAATAG-AGAATAGA------T-------ATAT-TAAAAAAAACC---
s cb4.chrX             13730150 334 - 21540570 AAAGTGCAGACAGCTCGGCAaagaaaagtttcc----aaaaatcaacagCTAAATTTTTTCC--GCTTGCACCGGGGTGAATGGGCCAACATAAACAAAGATATCCG---CTTGGGCTCGCTAAATGACTTGTTCAAACACGTATCGGGTCAACAGAAGTGCAAAGACAG---------agaggaaaaaagtttca-aaatttccttcc------------AAATGCTTATCATCAATC---AATCAAAAACCGCCGCCTTCAAATCGGCTTATC----TTCAGCAACTTGATGCACAGTGAACATTGAAAGAGCcagacaat----tcaaaaataaagaaggagaag-acgttagaaga---a-------atatataaaaagACAC---
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4473034 310 +  4500979 AGTGTGCAGACAGCTCCGCAA--AAAagcttcc---aaaaaatcaacagtTAA--TTTTCCT--GGT------GGGGTGAATGAGCCAACATAAGCAAAGATATCTATGCCGTAGGCTCGC-AAATGACTTGTGCAAACATGCTGCGGGTCAGCAATTGTGCGAAGACAG----------------GAgagtttaa-a-------tttt------------aattgcTTATCAAC-ATC---AtttaaaagagagaaaattcaaataggATTATC----ATCTACAAC----TgcaaactgaaaatcgaagacTTCAAATAAT----AAACTATTTTAG-ATATGAAG-ACGCTAAACCAGTGA-------AGATATAAAAAGAGAC---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576    24812 297 -   128984 AAAGTGCAGACAGC-ccgcaaa-aaaaatttt-----gaaaaccaacATCTAAATTT-------ACT------GGGGTGAATGTGCCAACATAAACAAAGATATCTAT-CCGTGGGATTGCTAAATGACTTGTTCAAACACTCTGCGGGTCAGCATGAGTGCAAGGACAG------------CAGAAAAAGTTGCA-A-------TTTT------------AATTGCTTATCATC-ACC----------AAAACCCGTTTCTAAATCGGCTTATC----GTTTCCGAT----TGCACAgtggaaaacagaaagtcCAGACAAGATGGATACTATTTCAG-TCGAG----ACATCGGA------A-------GGATATaaaaaaaGAC---
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988253 328 -  4147112 AAAGTGCAGACAGCtccgcaaa-aaaagttttc----aaaaatcaacagcTAAATTTTTTGCTAGTT------GGGGTGAATGAGCCAACATAAACAAAGATATCTGTGCCGTGGGCTCGCTAAATGACTTGTTCAAACACGATGCGGGTCAGCATGATTGCAAAGGCag-----------ccggaaaaaatttcaca-------tttt------------aaTTGCTTATCATC-aacacaaattcaaaaaaactgtgt-tAAATCGGATTATC----GTCAGCAAC----TGcacagtgaaaatcaaaaact-cagaCTGTTaaaaaaaCGTTTCTA-ATGAAAAGTACATACGA------AGATATCTGAATCTAAAAAGAGCC---
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951    17718 318 -   152553 aaagagCAGAcag----------agcaatttttttttgaaaattggcatA--------------GCG------AGAGAGAAAAAGCCAACA------ATAATATCCGTGCAGTCGGCTTGGAAAATCATTTGTTCAAACACACTCTGGGTCAGCATGAGTGAAAAGAAGACGGTGAGAAAAGCAGAGAAAGTTTAa-taattcaattttaattCCGAGTTGAATTTCTTATcata-aaa---acttgaaaacaatgca---aaaatcgGGTTAATTTGATTCAGAGAC----AGTACAATTACG-----------TAGttattcaaaatttcattttta-acatAAAA-AATACAGAGT----A-------AAgcacaataaaaaatatc
i caeJap4.Scaffold4951 I 161 n 161

a score=45090.000000
s ce10.chrX             2255707 102 + 17718866 ACATTTTCGTCTCATTTTAAAAGTGTAAGAAGATACTGGAATGTGGTGAAAGACAATACGGAGTTGACGACGCTTTTCTGGCAATATTTGGCACGTCTATTT
s cb4.chrX             13730484  87 - 21540570 AGACTGGCACT-------GGAAGTGAAAGAGGATATCAGGA-----TGAAAGACAATATAGAGCT---GACGCTTTTTGAGCGGAATTTGGCACTTctattt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  4473344  87 +  4500979 AGACTGGCACG-------AAATGTGTAAGAAGATATCGGAA-----TGAAAGACAATATGGAGCT---GACGCTTTCCGAGCAAAATTTAGCACGTCTATTT
i caeRem4.Crem_Contig0 C 0 I 3689
s caeSp111.Scaffold576    25109  92 -   128984 AGACCGAcacc-------aaaaatgaaaaaagatatggAAATGCGTTGAAAGACAATATGGTGCT---GACGCTTTCCGTGCAAGAAGTGACACTTCTATTT
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988581  92 -  4147112 AGACTGgcagc-------aaaaatgaaagaagataCGAGAATGTGTTGAAAGACAATATGGAGCT---GACGCTTATGGGGTAAAATTTGGCACTTCTATTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    18036 161 -   152553 I

a score=-763.000000
s ce10.chrX             2255809 11 + 17718866 ATACACTTTTT-
s cb4.chrX             13730571 11 - 21540570 ttatacttttt-
i cb4.chrX             C 0 I 11599
s caeSp111.Scaffold576    25201  7 -   128984 -----CCGTCTA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988673  7 -  4147112 -----CCGTCTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    18036 161 -   152553 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=-11419.000000
s ce10.chrX             2255820 255 + 17718866 TAAATCAGTTTCTGAAGAATTGATAATTAAGAGtttatattaatataaaaatttGTGATAATTCAAAAGTCAAAAAACGTAATGACATGAGAAAACCCGTGATGGGCAAATACCGTAAAAATCTGAATAAAAACTCGTTTCAGAGTACACGGAGAGCTTGGAAAAAATTCCTTATCACAAGTAACAAGTACAAGGACAAGTAATGAAGAGATGCGATTTGAAAAAAAAAACTTGGTATTAAATTGATGATG-------------TTCA
s caeSp111.Scaffold576    25208 139 -   128984 TGAATTCGTCTCATGTg---------------------aagaaaattagtttttatcCCA----AAAACAC-------------------------------------------------GTTTTATC---------TTTCt--------agaaagttcaaaaaaaat-------------tgaaaaccataaatcaaacaaggaaaaa------------caacatgaaattgataactcatagaaaaca-------------ATCT
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988680 140 -  4147112 T-------TCTTTAGTG---------------------ATGGCTATAAAAACTTCTC-------AGAAGTC-------------------------------------------------ATCTCATTACTAATTCATTTCA--------ACGAACTTCata-------------------tgaaaa-tataatttaaaaaaatcaaaa----------------atattcttaGGATTTAACAGAATTTATGCCTGGCtatgttttt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    18036 161 -   152553 I
e cb4.chrX             13730582 11599 - 21540570 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=24250.000000
s ce10.chrX             2256075 288 + 17718866 CGGATTCTAGTAGTAACCGGCAATTTTGGCAAAGTGG-ATAGGATCCTCCTCATTT-TTGTAGAGATCATGTGGTGTCTGCTGATGACTTGTTCCACACACATCCATTCCTTTGCGGCAATAGCGGCAGACTCCGTACATCTCGAGACGAAAGTCGCCTGCGCGAATTGTAGTCACGACAAGTGGCAGGACTCTTTCGAAAATCTTTCCAGCGTCCATGAAGCTGCTTCTCCATTCTTTGTTGTAGAC-------CAGCGGTTGTCTGCGCCACTGTAAGGAAAATAAAATTAT-----ACA---
s cb4.chrX             13742181 287 - 21540570 cgaattc-aatAATGTCCAGCACTTTTGGCAAAAACACAC-GGTTCAGTGAGACTG-GCGTAGAACTCTCTTGGTGGTTGCTTGTGGACAGCTCCACAAACGGTTGGTGGCTTCTTGCAGTACGGGCAGACACCATACATACTGGCGGAATA------GCTGCGAATCACTTTGATTGTCAACGGAAGGACTCGCTCGTAGATTTTGGTTGCAGATTGAAAATCCGTTCTCCAGTTGGC-GTATTGTCTCATGTTCATGGGCTGCTTGCGCCACTGCA---AACCAAAAAGAAT-----AAGACA
i cb4.chrX             I 11599 I 6
s caeSp111.Scaffold576    25347 284 -   128984 CAAATTC-AGCAATATCCGGCAGTTTTGGCGTAGACG-AT-GGTTC--CTTCAGTG-GCATAGATTTCCGATGGATACTGTTTGTGACGTTTTCCACACACTTGTGGACCATTTTTGCAGTACTTGCACATACCGTACTCCCTTGGATTGTACTCTCCCGGACGAATTGGCTTGACGACAAGAGGCATTATCCGCTCATAGAGCCGACCAGCCTCACGGAAATCCTCTCTCCAATTGGCAGCATAGTC-------CGCCGGCTTTTTACGCCACTG-----AAAGAATAACCACATTTAAAA---
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0      2988820 284 -  4147112 ccttttc-aataatATCCAGCGGTTCTGGCATAAACA-AT-TGTTCGTCTTTCCTGTTCATACAACTCCTTTGGATACTGGCGATGTTTCTTTCCGCAGACTTCTGGCCCTGTTTTGCAATACTTGCACAATCCGTAATCTCTTGTCGTATACTCTCCATTACGGAGTGGCTTGACTACAAGAGGCATCACTCGTTCATAAATACGACCGGCTTCACGGAAATCTTCTCTCCAGTTTGGTGCGATTTC-------AGCTGGTCTTTTTCGCCACTGTA---AACGAAAAATTAC-----Aaa---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    18036 161 -   152553 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=600.000000
s ce10.chrX             2256363 2 + 17718866 CC
s caeSp111.Scaffold576    25631 2 -   128984 CC
i caeSp111.Scaffold576 C 0 I 3
s caePb3.Scfld02_0      2989104 2 -  4147112 cc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold4951    18036 161 -   152553 I
e cb4.chrX             13742468 6 - 21540570 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=830.000000
s ce10.chrX             2256365 22 + 17718866 -AGTTTCGAAAACAGTGGTTTTG
s caePb3.Scfld02_0      2989106 23 -  4147112 taattttgaaaataaaaaatttg
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold4951    18036 161 -   152553 I
e cb4.chrX             13742468  6 - 21540570 I
e caeSp111.Scaffold576    25633  3 -   128984 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=0.000000
s ce10.chrX             2256387 807 + 17718866  
e caePb3.Scfld02_0      2989129   1 -  4147112 I
e caeJap4.Scaffold4951    18036 161 -   152553 I
e cb4.chrX             13742468   6 - 21540570 I
e caeSp111.Scaffold576    25633   3 -   128984 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=151.000000
s ce10.chrX             2257194 3 + 17718866 AAC
s caeSp111.Scaffold576    25636 3 -   128984 AAT
i caeSp111.Scaffold576 I 3 C 0
e caePb3.Scfld02_0      2989129 1 -  4147112 I
e caeJap4.Scaffold4951    18036 161 -   152553 I
e cb4.chrX             13742468 6 - 21540570 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=-1026.000000
s ce10.chrX             2257197 8 + 17718866 ATTGATCG---
s cb4.chrX             13742474 8 - 21540570 ---ACTAATTG
i cb4.chrX             I 6 C 0
s caeSp111.Scaffold576    25639 8 -   128984 ATGGATAA---
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0      2989129 1 -  4147112 I
e caeJap4.Scaffold4951    18036 161 -   152553 I
e caeRem4.Crem_Contig0  4473431 3689 +  4500979 I

a score=910.000000
s ce10.chrX             2257205 1 + 17718866 A
s cb4.chrX             13742482 1 - 21540570 A
i cb4.chrX             C 0 N 0
s caeRem4.Crem_Contig0  4477120 1 +  4500979 A
i caeRem4.Crem_Contig0 I 3689 C 0
s caeSp111.Scaffold576    25647 1 -   128984 A
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951   147784 1 +   152553 A
i caeJap4.Scaffold4951 I 14848 C 0
e caePb3.Scfld02_0      2989129 1 -  4147112 I

a score=910.000000
s ce10.chrX            2257206 1 + 17718866 A
s cb4.chrX             3765809 1 + 21540570 A
i cb4.chrX             N 0 C 0
s caeRem4.Crem_Contig0 4477121 1 +  4500979 A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   25648 1 -   128984 A
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951  147785 1 +   152553 A
i caeJap4.Scaffold4951 C 0 C 0
e caePb3.Scfld02_0     2989129 1 -  4147112 I

a score=38668.000000
s ce10.chrX            2257207 214 + 17718866 ACTTACCGAAGCACAACAGGTCAGCAGCTCGTTCACAGTAACTTTTGCGCCCATGTTAATCATTCGCTGGAGAATAGTAGCAATATTCAGACAGTCATCCATGGCATCATGAGCACGTCCGATGGTTGGCAGATCGTAGTATTCGTTCATCTTGCCGATGTTGGTCTGAAAAGATTA------------------TTTATATCATACATTTTTTTAAAAACTA--TTTGCAATT
s cb4.chrX             3765810 208 + 21540570 ACTTACGCCAGCGATGCACTTCAATGACTCATTGATATTAACAAAGGTGCCATTGTCAAGGATTCGTTTGGTCACTTTCGCAAGGAAGGAGCAATCGTCCATGGCGTTGTGAGCCTGTCCCTCGTTTGGAATGTTGTAGAATGCCGACATCCTTTCGattaaactctgaaaattttc--------------------gagtttagCTAACTTTCTGCAT------GCTACGAGT
i cb4.chrX             C 0 I 4
s caeRem4.Crem_Contig0 4477122 206 +  4500979 ACTAACAGGAGCACAGCAGACAAGTGCTTCGTTGATGTAAACTGATGCTCCACTTTCAAGAATCTTCTGTGTGATTCTAGCCAGAGTGAGACAATCGATCATAGCGTTGTGAGCTCCTCCTGGACTCTTCACGCCATGGAAAATTGCCATTTTCTCCATATAGGTCTGCAATTGTTA--------------------TATTTCA--TGATGTACAATAA------TTCATaaat
i caeRem4.Crem_Contig0 C 0 I 35
s caeSp111.Scaffold576   25649 206 -   128984 ACTTACCATAGCACTGCAGATAAGCGCCTCATTGATCGTAATCGTTGCTCCGGTTGCCAGCattttctgagcaattttggcAATAGTCTGACAGTCATTGAGAGCGTCATGAGCAGGGCCGCTTAGCTCCAATTCATAAAACTCggtcatttttccaatataGGTCTGAAACAACTA---------------------ATTTCAtctcgaattttgaaa------tttaaaaa-
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989130 234 -  4147112 acTCACCACTGCACTGCAAACCAATACTTCGTTTATGTGGATTGTGGCTCCAGTAGCtagcattttttgaacaattgtcGCGATGGTCTTGCAATCATTGAGGGAGTCGTGAGCGCGTCCCGTTGTATCCAATCCGTAGTACTCAGCCATTTTTCCGATGTACGTCTGGAACAGATAATataaatatacaaaaaaattattcgattagaaacgatgaaaaatatcttcaaaaac
i caePb3.Scfld02_0     I 1 I 4
s caeJap4.Scaffold4951  147786 211 +   152553 ACTTACAACTGTCCTGCATACTAATTCCTCATTGACTGTGATATGGGCGCCACTTTCTAGCATTTTTTCTACGACCAAAGCAAGATTTAGAACGTCGTTTAAAGCGTCATGTGCTCTTCCAATGAATTCAACGTTATAGTATTCGCACATTTTGCCAATGTTTGTCtggaaatatta----------------aaaaaaaaacaaagcctTTTCTTAAC------ACgagaaa-
i caeJap4.Scaffold4951 C 0 C 0

a score=1674.000000
s ce10.chrX            2257421 31 + 17718866 GAACTCACCGTCGCAGAAAGCTCTTTGGGGC
s cb4.chrX             3766022 28 + 21540570 GAGCTCA---TCACGAAGAACACGTTGTGAA
i cb4.chrX             I 4 I 30
s caeSp111.Scaffold576   25855 26 -   128984 -----taccTTCTCCATCAGTTCTTTACGGC
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989368 29 -  4147112 --gttcaCCTTTTCTAACAGTTCTTTACGTC
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold4951  147997 31 +   152553 aaactcacatctTTGACAAGGACCTTAGTTC
i caeJap4.Scaffold4951 C 0 C 0
e caeRem4.Crem_Contig0 4477328 35 +  4500979 I

a score=51418.000000
s ce10.chrX            2257452 125 + 17718866 CCAT---TCGATCCATCTCATTCGTGAAAATCTTG-----------TACAAATTGATGTACTGACGGAAGAAAGCTGGCATTTGGATATTGGACAGTTTCATCTGATACTGAGCAATACGCCACAAATCCTGACGACTG
s cb4.chrX             3766080 133 + 21540570 --CT---GTTGTTGTGC-CATACGAAGATCTTGTCTGTAGTACAAACTAAGATTCACCCATTGACGAAAGATTGTTGGAAATGGCTGCTTGTTTAGGAGGAATTGATATTGGGCGAGTCGCCACATGTCCTGGCGACTA
i cb4.chrX             I 30 C 0
s caeRem4.Crem_Contig0 4477363 122 +  4500979 --CC---ATTGTCATGT-TTTCTCCAAATGTTCTC-----------CAAAGATTGATATATTGGCGGAACATAGATGGTAATGGCTCCCTGCACAGACGAAACTGATATTGAGCGATTCTCCACATATCCTGACGACTG
i caeRem4.Crem_Contig0 I 35 C 0
s caeSp111.Scaffold576   25881 128 -   128984 CGCCAAGTCTTTCTTGCTCGGTCTCGAACGATCTC-----------CAGAGACTGATGTATTGGCGGAAAAATGCTGGCATTGTTAAATTGACCAACTTGAATTGATATTGAGCAATTCTCCACATGTCCTGACGACTA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989397 125 -  4147112 CACT---TCTGTCCTGTTCAGCTTCGAATGCTCTC-----------CAGAGACTGACGTATTGGCGGAAAAAAGACGGCAGCGTTGCATTGATCAATTTGAACTGATACTGTGCGATTCTCCACATATCCTGACGACTG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold4951  148028 125 +   152553 CCAA---TCGTTCTTGTTCCCATTCGAACGTTCTC-----------CAGAGATTCACGTACTGGCGGAAAAAGGGAGGCATAATGATTCCACAATAACGAAACTGCCATTGTGCGATTCTCCACAAATCCTGACGACTG
i caeJap4.Scaffold4951 C 0 I 1134

a score=32686.000000
s ce10.chrX            2257577 121 + 17718866 TCACAGACGAAAGCGAACTTTCCTTCTTCCAATCCAAGCGTGATGAGCCACTGCTGGAACTGCTCGTAGACCACATCAAAGGTGTCGGCGGTGTCAATGGAACGTTGCGGGATTCCTGAAA
s cb4.chrX             3766213 121 + 21540570 TCGCAAACGATCGCGAAGCGTTTCTCTTGGAAGTCATGCTCTTTGAGCCATGCACAGAACTGATTGTAGACTTCTGGAAACGTTCTGGCGTTGTCGATGGTATCCTGATCGATACctgtaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 4477485 121 +  4500979 TCGCTCACAAGAGCAAACTTCTTCTCTTCGAAATTATTCTGATCAAGCCAGGAGAGAAATTTCTTGTAGACATTGAGAAAAGTGTCAGCTTTGTCAAGAGTTTCTTGTTTGATTcctaaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   26009 121 -   128984 TCACACAAAATTGCAAAAGACCTTTCttcgaaattgttttctctgaGCCAATTGAGGAATTGGTTGTAGACTGTCACGAAATTGTCAGCTGAATCGAGTGATTGTTGTCTGATTCCTGGAA
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989522 121 -  4147112 TCGCATACAACAGCAAATTGACGCTCCGCAAAACCGTTCGTGTTGAGCCAATTGACAAACTGGTTGTAAACTTCTCTGAAAGTGGCAGCAGAATCAAGAGACTCTTGAGCAATTCCTGGAA
i caePb3.Scfld02_0     C 0 I 37
e caeJap4.Scaffold4951  148153 1134 +   152553 I

a score=-3358.000000
s ce10.chrX            2257698 30 + 17718866 ACTTTA----TTGTATTATGTATATTTATAAAAA
s cb4.chrX             3766334 17 + 21540570 ---aaa----ttttattttg----------tgaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 4477606 31 +  4500979 ---aaagaatttgcaGATTGGCTATGTAGACGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   26130 21 -   128984 -------------AATCATGGATTTTTGCACGAA
i caeSp111.Scaffold576 C 0 C 0
e caePb3.Scfld02_0     2989643 37 -  4147112 I
e caeJap4.Scaffold4951  148153 1134 +   152553 I

a score=-6492.000000
s ce10.chrX            2257728 20 + 17718866 TAACCAAACT--ATAAAAACGT
s cb4.chrX             3766351 20 + 21540570 acttcgaaaa--acaaaattat
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0 4477637 14 +  4500979 ACTCCT------CCAAAACT--
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold576   26151 16 -   128984 GAGTAGTACA--GTGCAA----
i caeSp111.Scaffold576 C 0 C 0
s caeJap4.Scaffold4951  149287 22 +   152553 TAGTCAAACTTCATAAAAACTT
i caeJap4.Scaffold4951 I 1134 C 0
e caePb3.Scfld02_0     2989643 37 -  4147112 I

a score=92292.000000
s ce10.chrX            2257748 232 + 17718866 ACCGGTAAAATCGACACAGTTCTTTGTCAAAGTCCGATTGAGAACAGGTTTGACGTACTTGTTGAAACTAATGTCCTCACGCTGaaaattaacta--ttattaaatattt-----ttaaaCGG---CAAAATTTCTCACAATTTTATCATTTGGGACATCATAGGCAACGATCGCGAACTGAATGACTTCGCACGGGTAATCTTGATTAGCAGCATCGGATGTTGTCTCAAAGTCGAGAATC
s cb4.chrX             3766373 230 + 21540570 aCCTGTCAACTCGGCGCAAAAATCAGTAAGTTTTGGATTGATAACTGGTCGCACATACTTGTTGAACGACACGTCCTCTCTCTGAAATT-TAtta--atttacaaaattt-----catttgaatttaTGA----CTCACGATAATTTTATCTCTTGTATTCAGCACACAGACACTGAACTGGATGATTTCGCTCGGGTAATCATGATCATCCTTCTCGCAGGTTCCCTCGAAATCCAAGATC
i cb4.chrX             I 2 N 0
s caeRem4.Crem_Contig0 4477652 230 +  4500979 ACCAGTTAAATCAGCACAATAACTCGACAACTTTGGGTTGATCACTGGACGAACATATTCGTTAAACGAAACATCATCACTctgaaatc---ata--attttgaagttttaaaaacatttgaa---acaa----cTCACGATTGTGTTTGACTTGACGTCCAACACCGCCACACTGAATTGAATGACTTCAAATGGGTAGTCGTGGTACACTCCATCAGAagttgtttcaaaatcaagCATC
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold576   26167 228 -   128984 ACCTGTGAAATCGGCACAGTAATCCGTAAGTTTCGGGTTGATGACAGGACGGACATACTTGTTGAAAAAGACATCCTTGTTCTGCAAACTCGTTT--ATAATGATAACCA-----TAGAAGAG---CCAA----CTCACAATAGTATTAGTTTTGACGTCTAGAACGACCACACTGAACTGGATGATTTCGAAAGGATAGTCGTTGTTTCCTTCCATTGACGTTGTTTCGAAATCCAGAATC
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989680 230 -  4147112 ACCAGTGAAATCAGCACAGTGTTTTGAGAGAATTGGATTGATGACTGGACGAACGTACTTGTTGAATGACAcattttcaagctgaaaacgtttttagaTACTGGAAGTTT-----TACTTTGG---TAGG----CTTACGATTGTGTTGGTTTTGACGTCTAGAACAACTACGCTGAATTGAATCACTTCAAATGGATAGTCACAGTTCGCTTCCTCTGAAGTGGTCTCAAAGTCCAGAATC
i caePb3.Scfld02_0     I 37 C 0
s caeJap4.Scaffold4951  149309 229 +   152553 ACCAGTGAAACTTTGGCAATGCTCTGTGAGAATTGGATTAATCACGGGACGTACGTACTTGTTAAAAGAAACGTCAGTTCTCTGAAATT-TGTTT--ACGTTAACATCAA-----TATTTTGT---TAAA--TGCTTACGATTCTTTTTGTTCGAGCATCCACAACTGCGACGCTAAATTGGATGATTTCGAACGGATAGTCAAAGTTGGACCCGTATGAAGTGGTTTCAAAGTCTAATATC
i caeJap4.Scaffold4951 C 0 C 0

a score=2359.000000
s ce10.chrX             2257980 4 + 17718866 TGAA
s cb4.chrX             14068535 4 - 21540570 AGGA
i cb4.chrX             N 0 N 0
s caeRem4.Crem_Contig0  4477882 4 +  4500979 TGAA
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold576    26395 4 -   128984 TGTA
i caeSp111.Scaffold576 C 0 I 2
s caePb3.Scfld02_0      2989910 4 -  4147112 TGCA
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold4951   149538 4 +   152553 TGAA
i caeJap4.Scaffold4951 C 0 C 0

a score=910.000000
s ce10.chrX            2257984 1 + 17718866 A
s caeRem4.Crem_Contig0 4477888 1 +  4500979 A
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold576   26401 1 -   128984 A
i caeSp111.Scaffold576 I 2 C 0
s caePb3.Scfld02_0     2989916 1 -  4147112 A
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold4951  149542 1 +   152553 A
i caeJap4.Scaffold4951 C 0 N 0

a score=-4490.000000
s ce10.chrX            2257985 25 + 17718866 TTGAAATTGATATTTTAGATGCACA
s caeRem4.Crem_Contig0 4477889 23 +  4500979 TC--TCTCGTTATTCTGAAcatata
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   26402 13 -   128984 TT--ATTTATCAATT----------
i caeSp111.Scaffold576 C 0 C 0
s caePb3.Scfld02_0     2989917 20 -  4147112 T----ATGATCGGTTTG-ACACACA
i caePb3.Scfld02_0     C 0 I 30770

a score=2420.000000
s ce10.chrX            2258010 45 + 17718866 -CAATTTTGAGCTGAACCT--ACCAATAAAGTATCAAACGGACAGTGT
s caeRem4.Crem_Contig0 4477912 48 +  4500979 tatatgtatattAGAACACTTACCAGAAGATTGTCATATGGACATTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   26415 45 -   128984 -ATCTTTTAGTTTGAAAAC--ACCAGAAGATTCTTGAACGGGCATTGT
i caeSp111.Scaffold576 C 0 I 5520
e caePb3.Scfld02_0     2989937 30770 -  4147112 I

a score=233.000000
s ce10.chrX            2258055 99 + 17718866 TGGTAAGCCATCCTGTATTGTGTACAGAGAGCGGTGACCTGAAAAATGTAGATTATTGGCAAGAAAAGATACAGAAA---------GAGTATAAAGAAAAGAGAGATG
s caeRem4.Crem_Contig0 4477960 82 +  4500979 CGAGACGACAT---------------------AATTACCTGAAATATGTTGA--ATTGAATGAGAAAGTT---GAAACCGATGCtcgattaaaaaaagaaagaagatg
i caeRem4.Crem_Contig0 C 0 I 6415
e caePb3.Scfld02_0     2989937 30770 -  4147112 I
e caeSp111.Scaffold576   26460 5520 -   128984 I

a score=0.000000
s ce10.chrX            2258154 1111 + 17718866  
e caePb3.Scfld02_0     2989937 30770 -  4147112 I
e caeSp111.Scaffold576   26460 5520 -   128984 I
e caeRem4.Crem_Contig0 4478042 6415 +  4500979 I

a score=1027.000000
s ce10.chrX            2259265 66 + 17718866 ACATTTTCAGAAAC-ATTTTTTAAAAAACGTGTTCAAAAC-----AAAATTGAGATCTATCACA----TGGAATAT
s caePb3.Scfld02_0     3020707 76 -  4147112 ATATTTTCACAATTTGTATTTTAAGGAAAGTATTGAAAACGTATGAAGGAATAGATCATTCACAGAAATGAGATAG
i caePb3.Scfld02_0     I 30770 C 0
e caeSp111.Scaffold576   26460 5520 -   128984 I
e caeRem4.Crem_Contig0 4478042 6415 +  4500979 I

a score=-1780.000000
s ce10.chrX            2259331 1 + 17718866 --T
s caeRem4.Crem_Contig0 4484457 1 +  4500979 -t-
i caeRem4.Crem_Contig0 I 6415 C 0
s caePb3.Scfld02_0     3020783 1 -  4147112 A--
i caePb3.Scfld02_0     C 0 I 9
e caeSp111.Scaffold576   26460 5520 -   128984 I

a score=4390.000000
s ce10.chrX            2259332 23 + 17718866 TCAAAATGGGGGTCCTAGCATTG
s caeRem4.Crem_Contig0 4484458 23 +  4500979 ttAGTAGAGAGGTCCCAGCAAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold576   31980 23 -   128984 TCAGAAGAGTGGACCAAGCAAAT
i caeSp111.Scaffold576 I 5520 C 0
s caePb3.Scfld02_0     3020793 23 -  4147112 TTAGAAGAGATGTCCAAGAAGGT
i caePb3.Scfld02_0     I 9 C 0

a score=35722.000000
s ce10.chrX             2259355 308 + 17718866 CATTGATTTCTGCGGATTGACGGGCACGACGGATTTGCTGGTTGATTTCTGTCAACAGATTCTGAAAAGGCACAAG-TTTTTTATTTAGTTTATTACAAATCTCAATTA-ATGCAAACT--CCCACCTGTAGCTGCTCGACAGTGTTGGCCATTGCAATTTTCCCTTTATAACCATCAATATGAGCTGTACTGGCGTTCAACTTTTTTGTGATAACCATTTGCGTGTATTCCGAGATACCTGGTTGGGCGATTCGCTGAGTAAGATTGAGATCGTCAAACTGTTTTTGGTAAGTGTTGATGGCTGCCTGAAA
s caeRem4.Crem_Contig0  4484481 298 +  4500979 CGTTGATTTCTTGAGACTGACGAGCCTTCTTGATCAAGAGAGTAATTTCATCATACAGAGTCTGAATAGAAAC--A-TTTAGTAGGGGTCTTTTTTGA--TTCTGTTAA-AGT-------ACTCACCTGGAACTCTTCTCTCGTTCTTGCCTTCTCGATTCTTGCGAGGTATCCGTCAATGTGAACAGTATTGGAGTTTAATCGTTTCAGGATGACACCACGGATGTAGTTCGAGATGTTTGGCTGAGTGACTTTTTGATCAAGTTTCATATCGTCGAAGTACTTTTGGTAGACTTTGATGGCAGcctaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold576    32003 296 -   128984 CGTTTATATCCTGAGTTTGACGGGCACGGCGAATGTCGCGAGTAATCTCCtcaagaattttctgaa---------a-tttaaagtTTAATCCCTTGTA------ATTAATATTTATATTTGCTAACCGTGAACTCTTGAGCCGTTGTTGCAGATTCAATTCGTTTCTTATACGATAATACGTGAGTTGTGGATTCgttgagtttttttgtgatgatGGCACGAGTGTATGGAGAGATGTTAGTTTTAACGAGTCGCTGAGCCAGATGTCTATCTTGCTGATATTTTTGGTAGACTTTGAATGCACCCTGTAA
i caeSp111.Scaffold576  C 0 C 0
s caePb3.Scfld02_0      3020816 300 -  4147112 TGTTGATCTCCTGAGACTGACGAGCACGACGGATGTTGGATTCGAGATCCTCGAGCAGCGGCTGAA---------ATTTTAGAGGTGAGTTGATTGGA--TCGtgttga-attcaaattgacaAACCTTGAATTCCTCAACAGTGGAAGCTTCGTCGGCACGTTTCTGGAATGCTGCAACGCGATTAAAGTTTTCGGTCAATTGCTTCGTTCCAACAGCCATAACGTATGGAGAGATGTTTGGCACGGCAAGTCTTTGAACTAGATGCTTCTCGTCTTGATATTTCTGATAGAGTTTGATGGCGGTCTGCAA
i caePb3.Scfld02_0      C 0 I 629
s caeJap4.Scaffold18213    3719 294 +   720316 CATTGATTTCTTGAGATTGACGAGCACGCAGGTTTTGGAGACGGATCTCATCGAGAAGCGTCTGAAACAATAT--G-TTAATAAGGAATTTCGTC-----TCTGTTTTA-AGT---------TTACCTGGAGTTGGTCAGTGGTTTGTGCCGTCTCTATTCGGGTTCGGTATCCGTCAATGTGAAAATTGTTCGCATTAACCTGCTTCAGCAAGCAACTTCTTTTAAATTTGGAGATGTTTTGCTGGGACGCTTTGTACACTAGATTCAGATCGTCAAAGTATTTTTGGTAGACCTTCATCTGTGCCTGAAA
i caeJap4.Scaffold18213 N 0 I 6375

a score=-1285.000000
s ce10.chrX             2259663 20 + 17718866 GTTTTCAAAAATGAGAAAAA--
s caeRem4.Crem_Contig0  4484779  5 +  4500979 -------aaaat----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold576    32299 18 -   128984 ----TGGAAaacatgaagaaaa
i caeSp111.Scaffold576  C 0 I 2936
e caePb3.Scfld02_0      3021116 629 -  4147112 I
e caeJap4.Scaffold18213    4013 6375 +   720316 I

a score=1412.000000
s ce10.chrX             2259683 59 + 17718866 TTACACAGA-ACGAAACAGAAAGTAGGTCATAAAGTATTCTTTAAAAAACTTCAGAAATT
s caeRem4.Crem_Contig0  4484784 60 +  4500979 tcatttagaGACAATACATAAAACAAGTGGTAAACTAGAATTTtggaatcttcaaaaact
i caeRem4.Crem_Contig0  C 0 I 627
e caePb3.Scfld02_0      3021116 629 -  4147112 I
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I

a score=0.000000
s ce10.chrX             2259742 276 + 17718866 CCGCGTCTACTCTAAAATACTTAAGATTAACTAATTCCGTAATGAGACCTTAGGAAAAGGTAGCAATTTTCACTACGGTTAAAAATTTAAGAAATTGGAAATTTTAGTTGAACTTAAAGAATTTAAACTACGTATTATTACAATTTTTCCAGAATATTTTCTTTTCAATTTGGTTTTTTAGACATTTAATTAATAATTATTATGGTAATACATGACATTTCACTACTCAAAATGTATTAAAATTTTATTTAAACATTTGTGAACACTTACCGCAAT
e caePb3.Scfld02_0      3021116 629 -  4147112 I
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I
e caeRem4.Crem_Contig0  4484844 627 +  4500979 I

a score=1041.000000
s ce10.chrX             2260018 28 + 17718866 TTCTTTTCTCAACTGAATCACAGCAGGA
s caePb3.Scfld02_0      3021745 28 -  4147112 TTTCTTTCTCAGCTTGAACACTGTCAGA
i caePb3.Scfld02_0      I 629 C 0
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I
e caeRem4.Crem_Contig0  4484844 627 +  4500979 I

a score=-3813.000000
s ce10.chrX             2260046 134 + 17718866 TCTTGAGCTCCACTTTCCTCGTCATCACCTTCCTTTTTCACTTCCTTTTCAGCCTCTTCGACGTTTTCCAGTT------------CATCATTTAC---------------TCCAGACCCAATTTTCTCAGTCACCTCTGCATCCGCCACATCTTCAGCAAC---------
s caeRem4.Crem_Contig0  4485471 134 +  4500979 ---------------------------TCTCGGTTT-CCACTTTATTCTCGACCTCACCAGTCTTTTCTGGTTCAGTATTCCTACCagcattttgaatattttccgaaatttcaccaTCAGCTTTCTGGATGTCCTTTTCAGTTGTAGTCTCCTCTTCACCA--------
i caeRem4.Crem_Contig0  I 627 C 0
s caePb3.Scfld02_0      3021773 117 -  4147112 ---TGA--TCCAGT------AACATCGTCTTGCTTG---ACTTCCTTCTCGGCGTCCTCAACTTCTTCTA---------------CAACCTTTTG---------------TTCAGATTCGGCT---------TCGTTCGAAGTATTAGTATCCGGCTTGACATCCGCAAC
i caePb3.Scfld02_0      C 0 I 2536
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I

a score=1885.000000
s ce10.chrX             2260180 357 + 17718866 CTGTGACTTCTCTCCATCCG------TTTTTTGAG------CATTTTTGTTA---TCATCAGAACTGTCAACT-TTCTCATCAGCAGTCACAATGCCTTCTTCAGTTTTAGGGTTTTCCATTGAGTCAACTTGATTTTTC-------TCGGCA-----------TTCTCATCGGCGGAATCTTTCTCAGGAACCTCGCCGTCAGTTGTAGTTGTCGCTTTTGGTGAACTACCAGCTTCTTCCGTTTTTACTGCTTCCTGGACTTCTTTCTTCACGGATAAGTCTTCCGGTCCATCTACTTCCATCGATTCATCCGGAAGAGAACTGTCATTCTCTTGTGGT-TCATGTTTTGGAGTTGGTGACGACATATTACCTACAAAAAAATACAATTA
s caeRem4.Crem_Contig0  4485605 358 +  4500979 ----GAAGTTTTTTCATCCGACTTAATTTCTTTAGTGTCCACATCTTTGGTCGGCTCATTC--ATTTTGGACTCTTCTTTTTGGTTATCGT--TTCCTTCTTCAG------AGATTTCCATTGGCTCAACCTGATCCTTCTTTCCAATCGACATGTCTAACGCTTCCTCATTATCG---TTTTGTCCGGCGAcaacattttcagtaat--ttgcTCCGATTGCTGAGTTG-GAGTCTCTTCTG-----ACTCATTAGTAGATGCCTT-------GGTTAAGTCTTCCGGGCAATCAGTTTTTGGAGTAATGTCCTCAGAAGTA-GGTTTTTCCAGAGAGGTGTCTCGAGGTGGAGTCGGAGAAGACATTTTACCTGAAAAGCTATA-AATTA
i caeRem4.Crem_Contig0  C 0 N 0
e caePb3.Scfld02_0      3021890 2536 -  4147112 I
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I

a score=0.000000
s ce10.chrX             2260537 1790 + 17718866  
e caePb3.Scfld02_0      3021890 2536 -  4147112 I
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I

a score=201.000000
s ce10.chrX             2262327 31 + 17718866 TTGCATTTCGAAAACTCA------CTTTCCATTTGTG
s caePb3.Scfld02_0      3024426 37 -  4147112 TTACATTCTAATATCTTATCATATCTTCTTAACTTTA
i caePb3.Scfld02_0      I 2536 C 0
e caeJap4.Scaffold18213    4013 6375 +   720316 I
e caeSp111.Scaffold576    32317 2936 -   128984 I

a score=273.000000
s ce10.chrX             2262358 1 + 17718866 A
s caeSp111.Scaffold576    35253 1 -   128984 a
i caeSp111.Scaffold576  I 2936 C 0
s caePb3.Scfld02_0      3024463 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    4013 6375 +   720316 I

a score=1620.000000
s ce10.chrX              2262359 12 + 17718866 AATTGGCATGCG
s caeRem4.Crem_Contig233    8044 12 -   113162 AAGTGGCAATAC
i caeRem4.Crem_Contig233 N 0 C 0
s caeSp111.Scaffold576     35254 12 -   128984 aaatagcaATCC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0       3024464 11 -  4147112 AAATGGCAA-CC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     4013 6375 +   720316 I

a score=2350.000000
s ce10.chrX              2262371 5 + 17718866 AAAAA
s caeRem4.Crem_Contig233    8056 5 -   113162 AAAAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     35266 5 -   128984 AAAAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0       3024475 5 -  4147112 TATGA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213    10388 5 +   720316 AAAAA
i caeJap4.Scaffold18213  I 6375 C 0

a score=61246.000000
s ce10.chrX               2262376 70 + 17718866 CAATGAGCGTTATCCGTGCACGTGTATTCAA-ATGCAGTATTGAAAACATCGGCTGGATACCGCTTACCGT
s cb4.chrX               16997167 71 - 21540570 CGATGAGCGTTATCCGAGCACGTGTACTCGACAACCAAGCTTGAATACAACGGAAGGATAGCGCTTATCGT
i cb4.chrX               N 0 I 525
s caeRem4.Crem_Contig233     8061 69 -   113162 CGATGAGCG-TATCCGTGCACGTGTACTCAA-ATGCGCTATTGAATACAACGGCTGGATATCGCTAATCGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      35271 70 -   128984 CAATGAGCGTTTTCCGTGCACGTGTATTCAA-ATTTGGTATTGAATACAACGGCTGGATACCGCTGATCGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3024480 71 -  4147112 CAATGAGCGTTATCCGTGCACGTGTAGTCAACCTCCGTTCTTGATTACAACGGCTGGATAGCGCTGATCGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     10393 70 +   720316 CAATGAGCACTATCCGTGCACGTGTACTCGA-ATCTTTTCTAGAATACTTCGGCTGGATAGCGCTAATCGT
i caeJap4.Scaffold18213  C 0 C 0

a score=1754.000000
s ce10.chrX               2262446 3 + 17718866 AGT
s caeRem4.Crem_Contig233     8130 3 -   113162 AAT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      35341 3 -   128984 AAT
i caeSp111.Scaffold576   C 0 I 334
s caePb3.Scfld02_0        3024551 3 -  4147112 GAT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     10463 3 +   720316 AAT
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               16997238 525 - 21540570 I

a score=-2052.000000
s ce10.chrX               2262449 44 + 17718866 TGCAGCCGGG--AAAGTAGTAACATTTTATGCTAATAAATGAGAAA--
s caeRem4.Crem_Contig233     8133 30 -   113162 CTCTGCCa----aaaa------------atactagcaaatgggaaa--
i caeRem4.Crem_Contig233 C 0 I 1291
s caePb3.Scfld02_0        3024554 32 -  4147112 AACTGCCAAG--AAAA------------ATACCAGAAGTTATAATA--
i caePb3.Scfld02_0       C 0 I 19
s caeJap4.Scaffold18213     10466 36 +   720316 GGAAGCTTgaataaaa------------gaataagaaaatcagaaaaa
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               16997238 525 - 21540570 I
e caeSp111.Scaffold576      35344 334 -   128984 I

a score=-2155.000000
s ce10.chrX               2262493 54 + 17718866 AAA-----------------CAGTGGAATTGA---TGAACAATAAACATTGATT-CAATA---------TTTTATCATTATCAA
s caePb3.Scfld02_0        3024605 84 -  4147112 gaagCGAGTATCGTCTGAGCTGGTGAAACTGATTGTGAATGATAGAGAGGGATTGCAATGGTGGCCTGTTTTTATCACAACCTT
i caePb3.Scfld02_0       I 19 C 0
s caeJap4.Scaffold18213     10502 40 +   720316 gaa-----------------gaatagaattaacaatgaa-aataa----------catt----------ttttatcaa------
i caeJap4.Scaffold18213  C 0 I 527
e cb4.chrX               16997238 525 - 21540570 I
e caeSp111.Scaffold576      35344 334 -   128984 I
e caeRem4.Crem_Contig233     8163 1291 -   113162 I

a score=737.000000
s ce10.chrX               2262547 31 + 17718866 TTTTATGTAGTGTCTTTTCTTCGAGCATGAA
s caePb3.Scfld02_0        3024689 30 -  4147112 TGCCTGGTGGTGTC-TGTCTCCGAGCAGAAA
i caePb3.Scfld02_0       C 0 I 239
e caeJap4.Scaffold18213     10542 527 +   720316 I
e cb4.chrX               16997238 525 - 21540570 I
e caeSp111.Scaffold576      35344 334 -   128984 I
e caeRem4.Crem_Contig233     8163 1291 -   113162 I

a score=0.000000
s ce10.chrX               2262578 566 + 17718866  
e caePb3.Scfld02_0        3024719 239 -  4147112 I
e caeJap4.Scaffold18213     10542 527 +   720316 I
e cb4.chrX               16997238 525 - 21540570 I
e caeSp111.Scaffold576      35344 334 -   128984 I
e caeRem4.Crem_Contig233     8163 1291 -   113162 I

a score=543.000000
s ce10.chrX               2263144 70 + 17718866 TTCAAACTTTTCAAATTTGGAAAATATTCTTCAC--TTTATTTTGT-------TGAAAAAATAAACCTTAAAAAAATAA
s caeSp111.Scaffold576      35678 79 -   128984 TTTGAGACtttcaaataaacaaatCGATGTTTATAGTTTATTTTATGAAGTTTTGTACAGATTAAGATAAAATAATCAG
i caeSp111.Scaffold576   I 334 C 0
e caePb3.Scfld02_0        3024719 239 -  4147112 I
e caeJap4.Scaffold18213     10542 527 +   720316 I
e cb4.chrX               16997238 525 - 21540570 I
e caeRem4.Crem_Contig233     8163 1291 -   113162 I

a score=-268.000000
s ce10.chrX               2263214 17 + 17718866 -GAAA-----TACAAGTTAAACA
s caeSp111.Scaffold576      35757 16 -   128984 TGAAAACATGTATAAT-------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3024958 10 -  4147112 -GAAA-----TACAAT-------
i caePb3.Scfld02_0       I 239 C 0
e caeJap4.Scaffold18213     10542 527 +   720316 I
e cb4.chrX               16997238 525 - 21540570 I
e caeRem4.Crem_Contig233     8163 1291 -   113162 I

a score=1646.000000
s ce10.chrX               2263231 111 + 17718866 GTCAACTATTATTGATCGTTGACTCTAGCAGTGAAAATTTGAAAAA--------------AAAAATCACCGTAAACCCGAATGAGA-GAGATT---GAA-----------AACAATTACATA---AAAATAAATGTACAAAAG
s caeRem4.Crem_Contig233     9454 131 -   113162 GTCAACTGTTATTAATTGTAGACTGcttcactgaaaatccaaCAAACATTTTACTGTTCAGAAATCAACTTTATACCCG--GGATA-CTAATC---GAATTATTACA---ATCAGTTACATAATCAATGGAAATGTACAA---
i caeRem4.Crem_Contig233 I 1291 C 0
s caeSp111.Scaffold576      35773 133 -   128984 ATCAACTGATCATAAAAGTTGACATGTGCAGCAAACATCTTAATACAATTGTACTTCAATAAAGTTCACTGCAAACCCG-AGGAAA-CTAATCAGAGAATTAATTTT---AAGAACTGCATA--CAAAAGAAATGTACAA---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3024968 100 -  4147112 GTAAACTTCTTAATACAATTG------------------------------TAC---------GTTGATTCCAAACCCG-CAAAGATCTAATCGGAGAAttgctttttcaaacaaatgcATAGTTATTGGAAATGTACAG---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     10542 527 +   720316 I
e cb4.chrX               16997238 525 - 21540570 I

a score=-249.000000
s ce10.chrX               2263342 23 + 17718866 TTTCAGATATGACACTACGAACA-----------
s cb4.chrX               16997763 17 - 21540570 tttcagatatcg-aGGAT----------------
i cb4.chrX               I 525 C 0
s caeRem4.Crem_Contig233     9585 33 -   113162 TGCCTGATATGG-ATGTTAATTAGGCAATTAAGA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      35906 29 -   128984 TGCCTGATATGG-GTGGTGAATAGGCAGTT----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3025068 24 -  4147112 TGCCAGATATGG-ATG-----TAGGCAGTT----
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     10542 527 +   720316 I

a score=143580.000000
s ce10.chrX               2263365 170 + 17718866 TTAGAACATGAGATGTGTTTTGCTCTTTCCTGACGCAATCTTAATGGATCCACTTTTTTGCACTCCGATTTTCCTTCTCACCACGTACCACTCGACAAGAAGAGCAGTGATGACAAGTGCCAAGCAGACCAGAAATAGGTTTCGTGCCCACCT--G-AAATGATTGAAAATAT-
s cb4.chrX               16997780 168 - 21540570 TTAGAACATCAGATGTGTTTTGCTCTTTCCGGATGCAATCTTGATGGATCCACTCTTCTGCACTCCAATCTTCCTTCTCACCACATACCACTCAACAAGAAGTGCTGTTACAACAAGTGCCAAGCAGATCAGAAATAGGTTTCTGGCCCatctaga-aattgag----aaaat-
i cb4.chrX               C 0 I 40
s caeRem4.Crem_Contig233     9618 166 -   113162 TCAAAACATTAGATGAGTTTTGCTCTTTCCGGATGCAATCTTGATGGAACCACTTTTCTGCACTCCAATCTTCCTCCTGACTACGTACCACTCCACGAGAAGTGCTGTGATTACAAGAGCTAAACATATGAGGAAAAGATTCCGTGCCCATCT--G-AATTGAA----AACGT-
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576      35935 167 -   128984 TTAGAACATGAGATGTGTTTTGCTCTTTCCAGATGCAATTTTTATGGATCCACTCTTCTGCACCCCGATCTTCCTCCGAACCACGTACCACTCAACAAGTAGTGCTGCTACCACAAGAGCCAAACAAATCAGGAACAGATTGCGAGCCCATCT--GAAAACGAT----GAGAT-
i caeSp111.Scaffold576   C 0 I 2
s caePb3.Scfld02_0        3025092 166 -  4147112 TCAGAACATGAGATGTGTTTTGCTCTTTCCAGATGCAATCTTGATAGATCCACTTTTCTGCACTCCAATCTTCCTTCTTACTACATACCACTCAACAAGAAGTGCTGCTACCACAAGAGCCAGACAAATCAGGAAGAGATTCCGTGCCCATCT--G-AAACACT----ATCAt-
i caePb3.Scfld02_0       C 0 I 2
s caeJap4.Scaffold18213     11069 167 +   720316 TCAAAACATCAGATGAGTCTTGCTCTTTCCAGAAGCAATTTTGATTTGCCCAGACTTTTGTACTCCGATCTTCCTTCTGACGACGTACCATTCAACAAGAAGCGCAGTAACCACAAGTGCAAGGCAGATAAGGAACACGTTTCGAGCCCATCT--T-CAATTTT----aagttt
i caeJap4.Scaffold18213  I 527 C 0

a score=2242.000000
s ce10.chrX               2263535 3 + 17718866 ATT
s caeRem4.Crem_Contig233     9785 3 -   113162 ATT
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      36104 3 -   128984 ATT
i caeSp111.Scaffold576   I 2 C 0
s caePb3.Scfld02_0        3025260 3 -  4147112 att
i caePb3.Scfld02_0       I 2 C 0
s caeJap4.Scaffold18213     11236 3 +   720316 gtt
i caeJap4.Scaffold18213  C 0 I 53
e cb4.chrX               16997948 40 - 21540570 I

a score=273.000000
s ce10.chrX               2263538 1 + 17718866 T
s caeSp111.Scaffold576      36107 1 -   128984 T
i caeSp111.Scaffold576   C 0 I 17
s caePb3.Scfld02_0        3025263 1 -  4147112 t
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     11239 53 +   720316 I
e cb4.chrX               16997948 40 - 21540570 I
e caeRem4.Crem_Contig233     9788 0 -   113162 C

a score=291.000000
s ce10.chrX               2263539 3 + 17718866 Tcc
s caePb3.Scfld02_0        3025264 3 -  4147112 tcc
i caePb3.Scfld02_0       C 0 I 15
e caeJap4.Scaffold18213     11239 53 +   720316 I
e cb4.chrX               16997948 40 - 21540570 I
e caeSp111.Scaffold576      36108 17 -   128984 I
e caeRem4.Crem_Contig233     9788 0 -   113162 C

a score=0.000000
s ce10.chrX               2263542 309 + 17718866 atacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataccatacctataacatacctttgccatacctataacatacctttgccatacctataacatacctttgccatacctataccacaccgataccacaccgataccacaccgataccatacctaCACTATTCCAAGGCTGTTTTCCCAAACCATATCCCCTTCACAACCAAGA
e caePb3.Scfld02_0        3025267  15 -  4147112 I
e caeJap4.Scaffold18213     11239  53 +   720316 I
e cb4.chrX               16997948  40 - 21540570 I
e caeSp111.Scaffold576      36108  17 -   128984 I
e caeRem4.Crem_Contig233     9788   0 -   113162 C

a score=579.000000
s ce10.chrX               2263851 11 + 17718866 ATCAGCTCCAA
s caeRem4.Crem_Contig233     9788 11 -   113162 ATCAACTCTCA
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3025267 15 -  4147112 I
e caeJap4.Scaffold18213     11239 53 +   720316 I
e cb4.chrX               16997948 40 - 21540570 I
e caeSp111.Scaffold576      36108 17 -   128984 I

a score=-289.000000
s ce10.chrX               2263862  2 + 17718866 ----------TA
s caeRem4.Crem_Contig233     9799 12 -   113162 TATTTGTTCGTG
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3025282  2 -  4147112 ----------tg
i caePb3.Scfld02_0       I 15 C 0
e caeJap4.Scaffold18213     11239 53 +   720316 I
e cb4.chrX               16997948 40 - 21540570 I
e caeSp111.Scaffold576      36108 17 -   128984 I

a score=546.000000
s ce10.chrX               2263864 1 + 17718866 A
s caeRem4.Crem_Contig233     9811 1 -   113162 A
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3025284 1 -  4147112 A
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     11292 1 +   720316 A
i caeJap4.Scaffold18213  I 53 C 0
e cb4.chrX               16997948 40 - 21540570 I
e caeSp111.Scaffold576      36108 17 -   128984 I

a score=80900.000000
s ce10.chrX               2263865 88 + 17718866 CTTACATTGGAACGGAATGATCTCTCTGTTCACCGTTCAGCTCGTAATAATCTTTCAGTGCATATCCCACATCATCCACCAGATCCTC
s cb4.chrX               16997988 88 - 21540570 CTTACAATGGCACTGAATGATCTCTCTGCTCTCCGTTCAATTCGTAGTACTCCTTCAGTGCGTACCCCACATCATCCACCAAATCTTC
i cb4.chrX               I 40 C 0
s caeRem4.Crem_Contig233     9812 88 -   113162 CATACGGTGGTACGGAATGATCTCTCTGTTCCCCGTTTAGTTCATAGTATTCTTTCAGTGCGTATCCAACATCATCCACAAGATCCTC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      36125 88 -   128984 CTCACAGTGGCACTGAATGGTCCCTGGGTTCGCCGTTCAGTTCGTAATACTCCTTCAAAGCGTAACCGACATCGTCAACAAGATCTTC
i caeSp111.Scaffold576   I 17 C 0
s caePb3.Scfld02_0        3025285 88 -  4147112 CTGACAATGGAACTGAATGATCTCTTTGTTCACCGTTTAACTCATAATATTCTTTCAGAGCATAGCCCACATCGTCCACCAGATCCTC
i caePb3.Scfld02_0       C 0 I 2
s caeJap4.Scaffold18213     11293 88 +   720316 CTCACAATGGTACGGAATGATCCCTTATTTCGCCATTAAGCTCATAATACTCTTTGAGCGCATAGCCCACGTCGTCAACAAGATCCTC
i caeJap4.Scaffold18213  C 0 C 0

a score=-1104.000000
s ce10.chrX               2263953 2 + 17718866 GA-
s cb4.chrX               16998076 1 - 21540570 -A-
i cb4.chrX               C 0 I 1
s caeRem4.Crem_Contig233     9900 1 -   113162 -A-
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576      36213 2 -   128984 TA-
i caeSp111.Scaffold576   C 0 C 0
s caeJap4.Scaffold18213     11381 2 +   720316 -AA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3025373 2 -  4147112 I

a score=36888.000000
s ce10.chrX               2263955  80 + 17718866 TAACCTTTGCTAGTGGCCAGCCTTAAACAATACAC---CGTTTCTGGTTAG------------------------CATTCAGTTATGCGCGT-ACCTTGCACCAACGC
s cb4.chrX               16998078  82 - 21540570 TCACTTTTGCTAGTGGCCAACCTGAAACACCAACTTgcagtttttgaatt--------------------------cctaaTTTATGCGCCGAACCTTGCACCAACGC
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233     9902  79 -   113162 TAACTTTAGCCAGCGGCCAACCTGAAACAACAAAT---ATATTCCGAACCG-------------------------ACTAATTTATGCGACT-ACCTTGCACCAATGC
i caeRem4.Crem_Contig233 I 1 I 1
s caeSp111.Scaffold576      36215  79 -   128984 TTACTTTGGCAAGCGGCCAACCTAAAACAAAAGAC---GTTTTCTGTTCCA-------------------------GATTATTTATGCGCCA-ACCTTGCACTAACGC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3025375  78 -  4147112 TTACTTTAGCAAGTGGCCAACCT-AAACAATAGAG---GTTTCTTCATTCA-------------------------GATTATTTATGCGCCT-ACCTTGCACCAACGC
i caePb3.Scfld02_0       I 2 C 0
s caeJap4.Scaffold18213     11383 103 +   720316 TAACTTTTGCCAGCGGCCAACCTAAAACATC-GAT---GCTGTGTTATCGAAAAGCAACACACAAGCCAGTCGGCCAAGTAATTATAAGCGT-ACCTTGCACGAGAGC
i caeJap4.Scaffold18213  C 0 C 0

a score=910.000000
s ce10.chrX               2264035 1 + 17718866 A
s cb4.chrX               16998160 1 - 21540570 A
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      36294 1 -   128984 A
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3025453 1 -  4147112 A
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     11486 1 +   720316 A
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233     9981 1 -   113162 I

a score=183335.000000
s ce10.chrX               2264036 303 + 17718866 TTGTTGACTTCACTTTGTATGTTTGGAAGTAACATTCGAAGACGATGTGAGCCTGGAA----------TAATTGAGTTGATCGAAGTCATAAGTTTTGAGTTTTG--CTCGAGTTTGAAAT-GTACCTGTGTGCAATCTCACGTATGGAATTTTTCTGGCGTCATTCACAACTCCATCGATTACAACAAGCTG--GAAAAC---ATATTTGGAAGGAGTGAATGGATAGAATGGCATCACTTACCGCTAGCAAATTTGTCTTGGTGCAAGATTCTCCGACACCAAACCATCGCTCATATACTTTCCACGAATAAACCTGAA
s cb4.chrX               16998161 297 - 21540570 TTGTTCACCTCGCTTTGTATATTTGGCAGTAGGACTCGAAGACGTGGAGAACCTGGAA----------TATTTGAGGTGAGCA-----GAGATATTTGTGTTCTGGTTTTCTGCCTAGATTTGTACCTGTGTGAAGTCTGACGTATGGGATTTTTCTGGCGTCGTTGACGACTCCATCGATAAcaacgagctg--aaaattggaatttttgaaaggggTTGAAAGAGTTAAAGTT-------ACCGCTAAAAGGTTGGTCTTCGAGCAGGATTCAGAAGCGCCAAACCATCGTTCGTAGACTTTCCAGGAATAAacctgaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233     9982 304 -   113162 TTGTTCACTTCGCTTTGAATATTGGGTAGTAAGACTCGAAGTCGGTGAGAACCTAGAA----------TAATTGAAgtgatcaa---caaaaaacctGTGTTTTG--CTTCATGTTCAACAAGTACCTGTGTGCAGTCTCACGTAAGGAATTTTCCGGGCGTCATTCACAACTCCGTCAATAAcaacgagctg--aaaaataggaagatTTCAGGAATTCAGGAGTGCCGAATTTGCAACTCACTGCTAATAAGTTAGTCTTTGAGCATGACTCTGACACACCAAACCATCGCTCGTACACTTTCCAGGAGTAAATCTATA
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      36295 290 -   128984 TTGTTCACCTCGTTTTGTATATTAGGTAAAAGGGCCCGAAGACGTGGAGAACctggaa----------tatttgaaatgacCA------ACATGTTTGTGTTTTG--CTTCATCTGAG----ATACCTGTGTGCAGTCGAACGTAAGGTATTTTTCTGGCGTCGTTCACAACTCCGTCAACAAGAACGAgctt--gaaaataagaaagttC------TCAAGaagtcaaaaatat-ttaCTTACTGCTAATAAGTTTGTCTTTGAACATGATTCGGAGACGCCAAACCATCGTTCGTAGACTTTCCAGGAATAAATCtgaa
i caeSp111.Scaffold576   C 0 I 195
s caePb3.Scfld02_0        3025454 291 -  4147112 TTGTTCACTTCGTTTTGTATATTTGGTAGAAAAGCTCGGAGACGTGGAGAACCTGGAA----------TATTTGAAGTGACCA------GAGTTGTTGTGTTTTG--CTTTAT---------GTACCTGTGTGCAGTCGGACGTACGGAATCTTTCTGGCATCGTTCACAACTCCGTCAATAACAAcgagcta--aaaaaaaaggagtttccGAGAATTGAAAAGTGCAGAATTA-TAAATTACCGCCAGTAAATTGGTCTTTGAGCATGACTCCGATACGCCAAACCAACGCTCGTAGACTTTCCAggaataaatctgaa
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     11487 285 +   720316 TTGTTCACTTCACTCTGAATATTGGATAACGACACGCGAAGGCGTGGAGAACCTGGAATCTCGTTTTTTAATGGGAATTAATA--------------AGGTTTTA-------------------ACCTGTATGGAGCCGGACATATGGAATCTTTCTTGCGTCATTCACAACTCCGTCAATAATAACaagctgaaaaaaatagaaaagttaATCAAGACCCATGATACGAAAACT---ATTTACCGCTAACAAATTTGTTTTGGAGCACGAGTCGGAAACACCAAACCATCTTTCATATACTTTCCATGAGTAAATCTGTA
i caeJap4.Scaffold18213  C 0 C 0

a score=910.000000
s ce10.chrX               2264339 1 + 17718866 A
s cb4.chrX               16998458 1 - 21540570 a
i cb4.chrX               C 0 I 8
s caeRem4.Crem_Contig233    10286 1 -   113162 A
i caeRem4.Crem_Contig233 C 0 I 138
s caePb3.Scfld02_0        3025745 1 -  4147112 a
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     11772 1 +   720316 A
i caeJap4.Scaffold18213  C 0 I 10
e caeSp111.Scaffold576      36585 195 -   128984 I

a score=-1106.000000
s ce10.chrX               2264340 4 + 17718866 TATA----
s cb4.chrX               16998467 2 - 21540570 --ta----
i cb4.chrX               I 8 I 2
s caePb3.Scfld02_0        3025746 4 -  4147112 aaca----
i caePb3.Scfld02_0       C 0 I 381
s caeJap4.Scaffold18213     11783 6 +   720316 --TATCAA
i caeJap4.Scaffold18213  I 10 C 0
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=-1188.000000
s ce10.chrX               2264344 15 + 17718866 CA-----------------------ATTTTTGATTTCA
s cb4.chrX               16998471 38 - 21540570 CACACCGGAGAAAATTCGACATCATACTTTCCAAAGTA
i cb4.chrX               I 2 C 0
s caeJap4.Scaffold18213     11789 15 +   720316 CA-----------------------AGTTTCGTTTTCA
i caeJap4.Scaffold18213  C 0 I 67
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=-49.000000
s ce10.chrX               2264359 147 + 17718866 GCCAAGTACACACGAATATCACAGCT----TCTGCATCTTATTATCATTGAAGCTTTTT------TTAAAACCAGTCCGCAA---------TAATTT-------GCCATAC-CGTATTT-----TTTCGAT----TAGAATAA--CTGCAATGCTATTTCAC----CAAAAT-----ATTTTTCCTCATAAAAT
s cb4.chrX               16998509 191 - 21540570 GTCAACTTCAAA-GTGAAACACAGCTAAAGTTTGACTTTTGTATTGACAAAAGCGAGTTAATCGGTTAAAA--ATTTCACAACTCTCAGTTTAATTTTGATTGAGCCATTTTCGGATCTCCAGTTTTCGAAGCAACAAAATAATTCTGGAATACTTATTCACAACTCAAAATCGACgatttttcattcgaaaat
i cb4.chrX               C 0 I 216
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804  67 +   720316 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=0.000000
s ce10.chrX               2264506 158 + 17718866 TGATCTGTAAATTTGCCGTTGAAGGAGAACTAAATTGTTGCTATATTTTAAAAGTGTTGCTATATTTTAAAAGTGTTGCTATATTTTAAATAACAAGTTTTTCTAAACAAATCAAATATCAATATGAGACTTATCAAAAGCTTCCCAAAAACTTTTCA
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804  67 +   720316 I
e cb4.chrX               16998700 216 - 21540570 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=346.000000
s ce10.chrX               2264664 84 + 17718866 AAACGGTTAAAAATGTTTTCAAACAATTGTGCTAATGCTAGCTGAAACCCTA--AATTTTGCAAAATTTCCCATGTCACAGCTGTC
s cb4.chrX               16998916 73 - 21540570 AAACGGTGAGAAACGAC----GACGATTATATAGAGTCC--------CCCTAGCAAGCGGCCGACATTTCCCGGGTTAC-GCCGCC
i cb4.chrX               I 216 I 125
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804 67 +   720316 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=0.000000
s ce10.chrX               2264748 146 + 17718866 GGAAATTAATGTTTATTTTATTATAATCCTTAAAATTTACCTAAATTAATATATAAAGACCGAATTATACAGTTAATAAAAATAAAATCTTATGAAATTCAATGTGCAATCTTTATCACATCTAGgtgccacaaaaaagtttgcaa
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804  67 +   720316 I
e cb4.chrX               16998989 125 - 21540570 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=-676.000000
s ce10.chrX               2264894 360 + 17718866 aatttaagattgcatctaaaattagctgattttttttttaaatctttaaccgtcagaaaaaattataaattaaaaaaaaaagttttataacgaagttagttcatttgagcacattttgaatctataca-------ttAAGTCTATACATGGGGATTTACTGAGATATCTGAATATTTTTATTTTGTGAACTCCATTCTTCAAAAATAGATTTTATTGGAAACCGTTTAGCACT-GCATTCAATTTCGTTTTTGTATC---TCACGCAGGAAGTATTTTTCTCAGAAAACGTTT----TGCTACATTCTGAGAGTCCCTCAACTCAAGATTC------------ATCATTTCTAGCACGTGTTGAAGATGTGCCCACTTTGCGCACTG
s cb4.chrX               16999114 324 - 21540570 AACTGAGGgtaaaaacacaaatttgataactgttttcttaaa------------------------------aaatcaaaagattttGAACGAAA--AGTGCG---AAAAGCATGTTGAAACTgtccaaaaatgtttgtgatcATAAATACC-ATGCATTGTAAAAGCTTGacgatttt----tggaaactttctttttcaagAA----------------CCGTTAATTATTCTTGATCATTTTGGTTTTAACGTTGAGTTGAGTCGAAAATACATATGCAggcaaaactttcaaatattatatttttcatatcccTC--CCCAAACCTTTAGCACCCTCAGATCTTTCCTAGCACACGTC----ATGCATACAATAATCGCCCT-
i cb4.chrX               I 125 C 0
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804  67 +   720316 I
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=0.000000
s ce10.chrX               2265254 5 + 17718866 CAACC
e caePb3.Scfld02_0        3025750 381 -  4147112 I
e caeJap4.Scaffold18213     11804 67 +   720316 I
e cb4.chrX               16999438 0 - 21540570 C
e caeSp111.Scaffold576      36585 195 -   128984 I
e caeRem4.Crem_Contig233    10287 138 -   113162 I

a score=-4990.000000
s ce10.chrX               2265259 33 + 17718866 ----ACTTCACC-CAAAAAAAGAGCGATACTTGCGTGC
s cb4.chrX               16999438  9 - 21540570 ---CTTTTGACA--------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    10425 12 -   113162 ACCTGCCCCaca--------------------------
i caeRem4.Crem_Contig233 I 138 C 0
s caePb3.Scfld02_0        3026131 33 -  4147112 ----tcttcacaatattcaaaaactcatatttgcatg-
i caePb3.Scfld02_0       I 381 C 0
e caeJap4.Scaffold18213     11804 67 +   720316 I
e caeSp111.Scaffold576      36585 195 -   128984 I

a score=-6193.000000
s ce10.chrX               2265292 21 + 17718866 ---------AATGTGGAAAAC-GTGATAGAA
s cb4.chrX               16999447 14 - 21540570 ------------AAAAAGATTCTCAA-----
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    10437 18 -   113162 ------------gaaaaagtt-tcaattgaa
i caeRem4.Crem_Contig233 C 0 I 6
s caePb3.Scfld02_0        3026164 19 -  4147112 -----------tgaaaaaaac-ccgatttga
i caePb3.Scfld02_0       C 0 I 4
s caeJap4.Scaffold18213     11871 21 +   720316 AATGGTgcgaaagaaaaagaa----------
i caeJap4.Scaffold18213  I 67 C 0
e caeSp111.Scaffold576      36585 195 -   128984 I

a score=296722.000000
s ce10.chrX               2265313 525 + 17718866  
s cb4.chrX               16999461 513 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    10461 524 -   113162  
i caeRem4.Crem_Contig233 I 6 C 0
s caeSp111.Scaffold576      36780 509 -   128984  
i caeSp111.Scaffold576   I 195 I 920
s caePb3.Scfld02_0        3026187 512 -  4147112  
i caePb3.Scfld02_0       I 4 C 0
s caeJap4.Scaffold18213     11892 517 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=-11515.000000
s ce10.chrX               2265838 41 + 17718866 TTAGGTAGATTT-GAATGAGTTGCAGAAACA------Gaatatatatt-------
s cb4.chrX               16999974 28 - 21540570 -------------aa-atgaattttgaaaca------aaaactgtatt-------
i cb4.chrX               C 0 I 885
s caeRem4.Crem_Contig233    10985 35 -   113162 -------------AACAGTGATTTTGTGATATTTCTGATAATCGAATA-------
i caeRem4.Crem_Contig233 C 0 I 16
s caePb3.Scfld02_0        3026699 23 -  4147112 -------------------AATGAACCAATA------GAGTTCAAACT-------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     12409 49 +   720316 TTGGACACTTTCACAAATGACTACAGTGAAA------TAATGTTAACTATAAAGG
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-1331.000000
s ce10.chrX               2265879 10 + 17718866 taatttttga-
s caeRem4.Crem_Contig233    11036 10 -   113162 CAgtttttac-
i caeRem4.Crem_Contig233 I 16 I 26
s caePb3.Scfld02_0        3026722  8 -  4147112 --GCTTGAAA-
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     12458 10 +   720316 -GACTCTCAAA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-944.000000
s ce10.chrX               2265889 25 + 17718866 aatcaaaattaaaaattCGCGAACT
s caePb3.Scfld02_0        3026730 19 -  4147112 AGTTcgagttgaaaa------aaca
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     12468 18 +   720316 tactttatttaaaaatct-------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I
e caeRem4.Crem_Contig233    11046 26 -   113162 I

a score=-25902.000000
s ce10.chrX               2265914 194 + 17718866 GTTGAATCA-----------------AATATAGATTTGTCCTTT--GTCATCTG---AGAAAATAAATT------CCAA----------TTTATTTTCCT---ATAGTCTTGTAGA--------------TACCGTATA--TTTTCAATTCATG-CGGCAACCCT--------------TTTTTTATTGCAATTTTTTTTTGTGAAAC-----CTCATTAGTTTCGACATTTTGGAAAC--TTTTTCTGAACAT-------GTTTTAATGATTCTTTGTT
s caeRem4.Crem_Contig233    11072 239 -   113162 attggatcagtttttttcttttcgccAGCTCATATTCGTTTTTTATGTCCTCTGGC-ACATCCTAAATTAACCTCCCAAGACCTCAAATTTCATATGCATAACATATTCTT-------------------CTCCCCGGG--TTTCGAGTACACTATAGTGACTTTTTCTCATGCATATGTCTTTTTTAACAAGTGTTTCACGTGCCAC----ACGCAATAGTGTTGATTTGGTGGTCCCGgttctttt-------------cttttg--cttttttctgc
i caeRem4.Crem_Contig233 I 26 C 0
s caePb3.Scfld02_0        3026749 239 -  4147112 attga---------------------aatttagATGCGTTTTCCA-ATCATCTGATGACAGTCTCGACT------CCAA----TCACGTTTTTCTCTCGT----TATTTTT-TAGATTTGTTTG---CAGCTTCACTGATCTTTCAAGTCCATGCCAATAAATGTTGCACCCACTTCAGTTTAATTCGGCTGAAACTTCGTATGCCGCCAAAATATGATGCATCTTCTTTTATAgacatagtttttttgaaatttcacatCCTTGTGA-CCTTCTTCCCT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     12486 176 +   720316 -GTGG---------------------AA------------------GCCCTCCGG--Aagatttatttt------ccaa----------tttactTCCGC--------TTT-TAAAACTGACAACGTCAGCCTGGTAGA----TCAAATTT----CAAAGATCTTCGTTTTGAAGTGTGTTTGTTGTTCTTGGGCCTTT---TGAAAC--------AACAATATTGGTTATTGAGAAACAAGT------------------GGTTCAATGATTTTCCGTT
i caeJap4.Scaffold18213  C 0 I 167
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=102.000000
s ce10.chrX               2266108 7 + 17718866 AATTCAC
s caeRem4.Crem_Contig233    11311 6 -   113162 atctca-
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3026988 7 -  4147112 ATTTCAT
i caePb3.Scfld02_0       C 0 I 140
e caeJap4.Scaffold18213     12662 167 +   720316 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=471.000000
s ce10.chrX               2266115 60 + 17718866 AAAATGaatttaaaaaatt---aaatattaaattCAGGCCTAAAATATGAGTTTTTGTGACTG
s caeRem4.Crem_Contig233    11317 62 -   113162 aaaagaaagaaaagaagatgggATACATCAAATAAATACAc-atatatcattttttgtgaGTT
i caeRem4.Crem_Contig233 C 0 I 71
e caePb3.Scfld02_0        3026995 140 -  4147112 I
e caeJap4.Scaffold18213     12662 167 +   720316 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=0.000000
s ce10.chrX               2266175 68 + 17718866 AGAGCTAGTGATCTACAACTGAAAAgaggtttttgaaaatcagtactgcagtctctaatagtgctgca
e caePb3.Scfld02_0        3026995 140 -  4147112 I
e caeJap4.Scaffold18213     12662 167 +   720316 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I
e caeRem4.Crem_Contig233    11379 71 -   113162 I

a score=-460.000000
s ce10.chrX               2266243 71 + 17718866 ttcaaaaaggacc--------------------ttaaaa-----ttagtgacggtaCTCATTTTAATACCGTGAAAATTAACCGCGGCATAGGCCG
s caeRem4.Crem_Contig233    11450 94 -   113162 TTCAGGAAGAACCCATATGTCTTGACTCACTCATTGAAATGCATTCATTCACTGTTTTTGTTT--ACAACCTATATGTTATGTTCAGgatgaacaa
i caeRem4.Crem_Contig233 I 71 C 0
e caePb3.Scfld02_0        3026995 140 -  4147112 I
e caeJap4.Scaffold18213     12662 167 +   720316 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-122.000000
s ce10.chrX               2266314 2 + 17718866 ----AT
s caeRem4.Crem_Contig233    11544 6 -   113162 aaagaa
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3027135 2 -  4147112 ----at
i caePb3.Scfld02_0       I 140 C 0
e caeJap4.Scaffold18213     12662 167 +   720316 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=1330.000000
s ce10.chrX               2266316 52 + 17718866 -AAAAAAGAGCCCCGTTGCGATTTTAATAGGGAAAATACGGA--AAATTGAATAA
s caeRem4.Crem_Contig233    11550 34 -   113162 -aaaaggaag------------------agaaaaggaataGA--GAATTGATGAA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3027137 34 -  4147112 -aaaagaaaa------------------agaaaagatgggaA--ACATCAAATAA
i caePb3.Scfld02_0       C 0 I 100
s caeJap4.Scaffold18213     12829 36 +   720316 aaaaaagaaa------------------tgaaaagaatagGATGGAATTCATCA-
i caeJap4.Scaffold18213  I 167 C 0
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-8834.000000
s ce10.chrX               2266368 96 + 17718866 TTTTTCCAAA--GGTCACTGTTGTAACTT----ACTACTGCAAATTTATTTGCTTTGTAACGTTCTTAATATGTAGTAGAAATTTACAA-----TTTCACCCCCGTG
s caeRem4.Crem_Contig233    11584 46 -   113162 TAT-------------ACTGGTG--------------------------------------------AATATA----AGATGCACACAACTAActtttccttccaaa
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     12865 78 +   720316 ---TTTCGGGCTGTGCACGTGTGCatgtttccgtcttccgtgtGTCCATCATCTGCGCAGAA-----ATTATTTTGAAGCAACGTA---------------------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3027171 100 -  4147112 I
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-561.000000
s ce10.chrX               2266464 10 + 17718866 ACCTTCCTCA------
s caeRem4.Crem_Contig233    11630 10 -   113162 acttttctct------
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3027271 10 -  4147112 ACATTACCCA------
i caePb3.Scfld02_0       I 100 C 0
s caeJap4.Scaffold18213     12943 16 +   720316 ACCCGTCGCTTTTTGA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17000002 885 - 21540570 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-3576.000000
s ce10.chrX               2266474 35 + 17718866 CATATGCATAACATATTCTGTCGGGT---TTTGAGTAC
s cb4.chrX               17000887 28 - 21540570 CATATGCATATAAAATT---TCGGGT-------AGTAC
i cb4.chrX               I 885 I 9
s caePb3.Scfld02_0        3027281 27 -  4147112 --TATATGTCTTGACTC--ATTGAAA-------TGCAT
i caePb3.Scfld02_0       C 0 I 182
s caeJap4.Scaffold18213     12959 36 +   720316 CTCATGGAAATGCATTC--ATTCACTGTTTTTGTTTAC
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      37289 920 -   128984 I
e caeRem4.Crem_Contig233    11640  0 -   113162 C

a score=-17215.000000
s ce10.chrX               2266509 144 + 17718866 GTAGTGACTTTTTTCATGAATATATGCTTGAC---AAGTGTTTCACATGGCTCGCA-TCAACTAAAATGGATGT-----------------GGTGGTCGTTTCTTT---------------------CCTTTTCACAATAAAATATGATGGAAGACGTCAAATAAATACAT---GTGTATGTATATATC
s cb4.chrX               17000924 183 - 21540570 ATAGTGACTTTTCCCATGCATATCTCTCCTTCTTTTAGTCTTTCACGTGTTTGCTT-TGTCTCGTGGCGGACCCCTCTGTGTTGATTTGGTGGTCctggtttttttctggttcTGGAGGGCTCGTTTCCGTTGCAGGAAACAGAAAGATGGGAGACATCAAATGaataca-----tatatatatatatc
i cb4.chrX               I 9 C 0
s caeRem4.Crem_Contig233    11640 126 -   113162 -----tattttt---------atttccttttcttgtatttttt----tgtttcttt-tgagATGTTATGTGCAC-------------------TGCTGATGTTTTTCCAGATCCCAAGG--------CTTTTGCAAAAAGTGATGAGCtgcgaa-----aaatgaatg------------atcTAGAGC
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     12995 120 +   720316 ------------------------------------ACCCTTTCTTATGTTCGGTTATAACGAGAAACGGGAAA-------------------AATTGATGGACTGACGAATATAAGATGCACAAC-TCtttgcccaaa-------------aaattttccattccTATTTCCCGCGTTTCTCTTCCTC
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3027308 182 -  4147112 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-13487.000000
s ce10.chrX               2266653 70 + 17718866 ATTTTTTTTGAGTCGCGTGCCTTTTTGTCTGCATAACTTTTTTTTTTGGTCTACAGAGATGAGCTGACAA----------
s cb4.chrX               17001107 52 - 21540570 attttttgtgagGAG-----TTGCGTGTC---------TCTTTCTCTGTCTCAGAAT----CCCTTccga----------
i cb4.chrX               C 0 I 1
s caeRem4.Crem_Contig233    11766 29 -   113162 ---TGATGTGAAG--------------------------cttttgtttatttaaaaT------------G----------
i caeRem4.Crem_Contig233 C 0 I 1
s caePb3.Scfld02_0        3027490 62 -  4147112 tttttttgtgagctT-----ATTCTGGTCCACTAGTGATGTTTTTCTAGTTCCCAAG---GCTCTTGCAA----------
i caePb3.Scfld02_0       I 182 I 49
s caeJap4.Scaffold18213     13115 69 +   720316 -TTTATTCTCGCT-------TCGACTGTTTTGATGCACTCTTTTTGTAGATCCCTAG---ACTCTCGCAAAAAGTGACGA
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-5743.000000
s ce10.chrX               2266723 37 + 17718866 TTTGGAGGAGAATCAAAA---TTACTCC-------TATGCT--------AAAAAT
s cb4.chrX               17001160 48 - 21540570 ggagaagaaaaaagcgaaacATTACCCA-------TATATGACAAAGAAATGAAT
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    11796 29 -   113162 AGCAAAGGAGAATTCGAA-----AGCCA-------GATCGG--------------
i caeRem4.Crem_Contig233 I 1 C 0
s caeJap4.Scaffold18213     13184 35 +   720316 --GGAGGTGGAAAGTGAA---TTATCCACGGCCTTTGTTT---------------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3027552 49 -  4147112 I
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=-45094.000000
s ce10.chrX               2266760 134 + 17718866 ACATTTCAGGTTTTTTCT---------------ATAAATCTCAAG-----AAGTTTAGGGAG-----------------------TTTGCAA-----------------------------AATGTTTTTGAC---AATTTT----------------------------------------------------GACAA-----TTGTTGATTTCAGATCAAACTCT----------------------TCTTTTCACAAAGTT--TTTCGGCTCCTCAGTCCTTCAAAA
s cb4.chrX               17001208 243 - 21540570 TCATTCACTGTTTTTGTTTACAACTTATAT---ATAATGTTCAGGAAGCATAGAATAGAAAGACCAAGGGAAAGATATATCAAGTGCAATAAcccaaacttttttattg------------catttttctattttttcttttgtatgcttatctagaaaaaatgagcatGATTTATCTACTCTATGGgaagttccgaaa-----aaatgGGTTCCaaa-aaaaCTCGTTGC------------------TCTTTTC-----CTCCCCTTCCGATTCTCA---TCTtaaaa
i cb4.chrX               C 0 I 1
s caeRem4.Crem_Contig233    11825 108 -   113162 ------------TCTGTT--------------------------------TAGAAAAGAAAG------------------CTGGTGTGAGAA-----------------------------TATGTTCATATTTTAGCTTCT------------------------------------------------GTTCCAAAA-----CACTTCCTGTCAAA------TCTTTGC------------------tctatt-----------ttttggattttca---tctcaatt
i caeRem4.Crem_Contig233 C 0 I 14
s caePb3.Scfld02_0        3027601 161 -  4147112 acat--------tttgtt-----tttttatgcaagaatattcaaattc--tAGATTGGAAAC-----------------------GTGGGAA-----------------------------AACGTTCCTGACattaatttt--------------------------------------------------tccgaaatcaaGAAATCTCCCTCGAA------TCTTTGCGGAAGTAATCGTTTTTCGTCTTTTCACACATTCAGATTGgaatttttc---cttca---
i caePb3.Scfld02_0       I 49 C 0
s caeJap4.Scaffold18213     13219 135 +   720316 -------------------ATTATTTGGGTACCAATCCCTTCA-------TAATTTGTGATC-----------------------ATAAGAA-----ATTTGTTTATAAATTGCCAACAGctatgttcattttttttttgct--------------------------------------------------tcaaaaa-----ttATGGAATTATAT------TCTTT--------------------GCTCTTTAGACAAC---TTTGCAA-----------------
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      37289 920 -   128984 I

a score=72182.000000
s ce10.chrX               2266894 304 + 17718866 AAAAATTGTGAAC-TTTTTGC-------------GACACAATAAACGAGGGTCCTTGAGCAACCTGGA--------------AGGAAGCATAAGCAGAAGAAAGGCAGGGAGGGGGGACAC--AATTTCTTTTTTGTTGTCGCCG-AGGAATTTCCTTTTCTTCTATTTGTGGTTTT-CAATACAAAA-----GA---------GAAAAGGAGT----TTGAGTTTTT---------CGGCTTTCACAAATTGCGTTTACGGGGCGGCGAG----ACGATGTTGTTCACCT-TGTGG-TTTCCAAAGGAGACCACAAGAATGACTAATGTCGTTCACGCAG---TTCACCGGG----TAGG----TCTTGACTTTAAAAT
s cb4.chrX               17001452 297 - 21540570 aacatttttgaac-ttttttctctctatgtAAAAAACTT----TACAAGGGTCCTCAAGAAACCTGCC-----AAAAGAGGAAGGAAGCATATG----Agg------------ggaaaaaa--agatttctttttgttgt---cG-AGGAA----------------------TTTT-CAATACAATA-----GacaggaaaaggaaaaagaataAACTAGGGtttttttCGGGAGGAGAGGAGCACAAATTGCGTTTACGGCGGTCCCAC-------------CTCATGTGTGGCGGTTTCCAAAGGAGACCTT--GAATGACTAATGCTTTTGACACatccattttttggaattccagg----tTTTTA----GAGGT
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    11947 275 -   113162 aacattttcgaac-ttttttt-------------gacaC----AACAAGAGTCCTTGAGAAACCTGGC------AAAGAGGAAGGAAGCATAAGGAGAAAG------------GAAGAAAg--agatttctttttgttgtcgCCG-AGGAATTTTCCACTCCTC--------GTTTT-CAatacaata-----ga----------aaaaagagt----tggAGTTTTT---------GGGCGAGCACAAATTGCGTTTA-GGCCTCCCGAC---AACAATGTCGTTCACCT-TAGCGGTTTCCAAAGGAGACCGCGAGAATGACTAATGTCT------------TTTCTTGAA----CCAA----TATTCA----GATAC
i caeRem4.Crem_Contig233 I 14 C 0
s caeSp111.Scaffold576      38209 287 -   128984 aaaattgctgaacttttttgt-------------gaCAC----TACAAGGGTCCTTGAGAAACCTGGCGAAAAAAGGGGGGAAGGAAGCATAAgcaaaaac------------gaagaaag--agatttctttttgttgtcgCCG-Aggaattctcttttcctc--------gtttt-caaTACAATAGacggga----------aaaaagagt----tggaGTTTT----------CGGCGAGCACAAATGGCGTTTTCGTCGGTCCCACGACAACAATGTTGTTCACCT-TGTCG-TATCCAAAGGAAACCAATTGAATGACTAATGTcttggaa--------------aa----caaa----ttttca----gcatt
i caeSp111.Scaffold576   I 920 C 0
s caePb3.Scfld02_0        3027762 292 -  4147112 aaaatctccGAAC-TTTTTGT-------------GACAC----AACAAGAGTCCTTGAGAAACCTGGC------AAGTGGGAAGGAAGCATaagcaaaaaa-----------ggaagaaag--agatttctttttgttgtcgCCGAAGGAATTTTCCTAG--TC--------GTTTTCCAATACAATA-----GG----------AAAGAGAGT----TGGAGTTTT----------GAGCGAGCGCAAATTGCGTTTACGGCGGTCCCCCGACAACAATCTTGTTCACCT-TGCCGTTTTTCAAAGGAGGCCAAAAGAATGACTAATGTTTTGGAACTAA---ATTTTggaa----ctaaaattttttca----gggtt
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     13354 259 +   720316 ------------------------------AGTGAACTC----AACAAGAGCCCTCAAGAAACTTGGT-TAAGAggagtggaaaaaataatggaatgaaagaaagcgggaagagaagaaagaaaaataatctATTGTTGTGGCCG-AATAT-----------TC--------TTTGT-CAATAcatta-----ca-aagaaaaagaaggagatG----CTGAGCTTT-----------GAAAAGCACGTATTGTAATTTTTGAG-----------------TTGTTCTTCT-TGG---TCTCCCGAAGAATCCAT--GAATAACTGATatca------------cttttgaaaatttctgc----acTTCA----AACT-
i caeJap4.Scaffold18213  C 0 I 33

a score=-11455.000000
s ce10.chrX               2267198 39 + 17718866 TT-------GAGTGTCAAATTTTGA----------ATCACAAGTCAAAA------GTTCGAA
s cb4.chrX               17001749 40 - 21540570 TT--TTGAAGGGTTTCTCAGTTCAA----------GTT---agtttaaa-------tttcaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    12222 51 -   113162 TT------AGGATT--TCAGTTCAACCAAACGTCGATT---GGATCGAAAGACGTTTTTCAC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      38496 42 -   128984 tcgaaaagaggaaattacGTCTTGA----------ATT---GGTTA----AACTGGTTT---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3028054 39 -  4147112 tc-------aGATCATACGTCTTGA----------ATC---GGATAGATCAACTGGTTT---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     13613 33 +   720316 I

a score=384723.000000
s ce10.chrX               2267237 1260 + 17718866  
s cb4.chrX               17001789 1200 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    12273 1156 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      38538 1124 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3028093 1148 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     13646 1242 +   720316  
i caeJap4.Scaffold18213  I 33 I 49

a score=1423.000000
s ce10.chrX               2268497 18 + 17718866 ATAG----CTA----------------GAGACCAAGTT
s cb4.chrX               17002989 36 - 21540570 ATAG--CACTAAAAAAGAACAAGGACGGAGACCAAGTT
i cb4.chrX               C 0 I 32
s caeRem4.Crem_Contig233    13429 29 -   113162 tCGGATTACTAGAAAGTAA--------GACACTAGTT-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      39662 18 -   128984 ATAG----CTA----------------GAGACCAAGTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029241 18 -  4147112 ATAG----CTA----------------GAGACCAAGTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     14888 49 +   720316 I

a score=-3443.000000
s ce10.chrX               2268515 27 + 17718866 TTTGGAAGT--GATGTATTGGGTAGTA-AT--
s caeRem4.Crem_Contig233    13458 14 -   113162 -----------------TTGAGAAGTT-AGGC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      39680 31 -   128984 TTGAGTGTTGGGGAGTCTTCAGAACTA-AGAG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029259 30 -  4147112 TCGAGTATT--GGAGTCGTGAGATGTGTAGTG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     14888 49 +   720316 I
e cb4.chrX               17003025 32 - 21540570 I

a score=11646.000000
s ce10.chrX               2268542 26 + 17718866 AAAGTTGAGTACTCATGAATATTAAT-
s cb4.chrX               17003057 27 - 21540570 GAAATCAAATATTCATGAATATTCTGA
i cb4.chrX               I 32 C 0
s caeRem4.Crem_Contig233    13472 25 -   113162 -GAGTCAAATATCCATGAATATTCAG-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      39711 26 -   128984 GAAATTGAGTATTCATGAATATTCAA-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029289 26 -  4147112 GGAATCTAGTATTCATTTATATTCAG-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     14888 49 +   720316 I

a score=-5138.000000
s ce10.chrX               2268568 6 + 17718866 -GGAAA-G
s cb4.chrX               17003084 5 - 21540570 -TGAGG--
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    13497 5 -   113162 -TGAGA--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      39737 1 -   128984 -T------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029315 6 -  4147112 -TAAGAG-
i caePb3.Scfld02_0       C 0 I 245
s caeJap4.Scaffold18213     14937 6 +   720316 agaagg--
i caeJap4.Scaffold18213  I 49 C 0

a score=-65764.000000
s ce10.chrX               2268574 240 + 17718866 ACGA----GTTAATGATTGTAAATATT----------------------------TCTGACGCGAAAACACAAGATCTTTCAGAAAAGGAGTGATCTAT----------------------CTTCCAAATACAGGGATTCAGTTTTTTTGGTACCTGTCTCAGAAATTTTTTTCAATTTC--CACTCACCTGATAATTTAATCAAAATGG--------GAAATTG-------------ATTTGCATTCTCAGGTTAAGAAAACACTAATACTA--------------------------------AAACTAAAA--------------AATTACGTTGAATTTTAA-AAATGATAAACATATTT
s cb4.chrX               17003089 316 - 21540570 ACGA------TGAT-GGTGTATAAATtaagaagttttgaagtttctgaatgaaatttttagaatgaaaatGATG----TCGAAAACGGAACTGGTTTGTTGAGgaaatttggctaaaaatgattctgaaaa----aatataa----------------aacaaaaa---tattgagagCCTGAGTTCTCCACAttggtaaaa---attgaaatttccaaaaattgaaaataacttTCTTATGACA-TCCCACTTTTCGTGAATATGTATATTATTGGGCAATAATatcgcttttttttctaaactgaCCTAGAACA----CGTTTTTGaatgac-----attttga-aaaaattactaaaaacc
i cb4.chrX               C 0 I 52
s caeRem4.Crem_Contig233    13502 122 -   113162 GTTA----CCTAATAGGTGTATAATTC--------------------------------------AGATTCACG----TC----ACATAAATGGT--------------------------ATTCTAGAA-------------------------------AGGAG---TGTTGAGTTCC--AGTT--------------------------------ACAATTG-------------TATGAC-------------------------------------------------------------GAAGCAGGA------------------AC-----GTTCTAA-AAAGGGATCTGAATATT
i caeRem4.Crem_Contig233 C 0 I 72
s caeSp111.Scaffold576      39738 188 -   128984 ATGAGTCTCTTAATAAGTGTATAACCC---------------------------------GAAAGAAACACGAA----TCTGAATCTGAATT-----------------------------ACTCTAGAAA----TAATTAGTT-------------TCTCAGAAT--CTGTTTGGTTCC--TGCTTGTGGCGTGGAAAAAAC--AACGA--------GAAATCG-------------TGTTA--------------------------------------------------------------GAAATAAACCGATACTGATATATAATCACCT---GTTTTAT-AAAAGGGTTTTATGTTT
i caeSp111.Scaffold576   C 0 I 7
s caeJap4.Scaffold18213     14943 141 +   720316 -------------------------------------------------------------gcaaagTTACGAG----TG----CCAATAGTGAT--------------------------------GAAA---------------------------CTCAGAAG--TCATGAATATTC--AGTTAGAATCACTTTTTAAG---ACTGC--------ataattc-------------aaaaacattttcga-----------------------------------------------------aaactagga--------------agtttttttaaactttagcAAATAATATGCATCGGT
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3029321 245 -  4147112 I

a score=224.000000
s ce10.chrX               2268814 8 + 17718866 GGTGCAGG
s cb4.chrX               17003457 8 - 21540570 GTTGCAAC
i cb4.chrX               I 52 C 0
s caeSp111.Scaffold576      39933 8 -   128984 ATTGccaa
i caeSp111.Scaffold576   I 7 C 0
s caeJap4.Scaffold18213     15084 8 +   720316 GATTCTGG
i caeJap4.Scaffold18213  C 0 I 58
e caePb3.Scfld02_0        3029321 245 -  4147112 I
e caeRem4.Crem_Contig233    13624 72 -   113162 I

a score=-1485.000000
s ce10.chrX               2268822 20 + 17718866 TT----------TACCTTGAAAGTACCTAC-----
s cb4.chrX               17003465 35 - 21540570 tttttaaagcaattttttgaattgatcttttgaat
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      39941 18 -   128984 ttt---------tgttttgaa---acctGC-----
i caeSp111.Scaffold576   C 0 I 22
e caePb3.Scfld02_0        3029321 245 -  4147112 I
e caeJap4.Scaffold18213     15092 58 +   720316 I
e caeRem4.Crem_Contig233    13624 72 -   113162 I

a score=-35.000000
s ce10.chrX               2268842 38 + 17718866 ATTCATTCAGTATC--ACAAATAAATTCTCGAGGTATTCC
s cb4.chrX               17003500 34 - 21540570 ttttctacagtttctatcaaat------ttgatctacccC
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3029321 245 -  4147112 I
e caeJap4.Scaffold18213     15092 58 +   720316 I
e caeSp111.Scaffold576      39959 22 -   128984 I
e caeRem4.Crem_Contig233    13624 72 -   113162 I

a score=546.000000
s ce10.chrX               2268880 2 + 17718866 AT
s cb4.chrX               17003534 2 - 21540570 AT
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      39981 2 -   128984 AT
i caeSp111.Scaffold576   I 22 I 6
e caePb3.Scfld02_0        3029321 245 -  4147112 I
e caeJap4.Scaffold18213     15092 58 +   720316 I
e caeRem4.Crem_Contig233    13624 72 -   113162 I

a score=34.000000
s ce10.chrX               2268882 18 + 17718866 -TCAAAAT----------TTGTAGAAGTC
s cb4.chrX               17003536 27 - 21540570 CCAGAAAGGTGCACCATTTTGTAAAAG--
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      39989 16 -   128984 -TGTGAGG----------TCGAAAAGG--
i caeSp111.Scaffold576   I 6 C 0
s caePb3.Scfld02_0        3029566 16 -  4147112 -TCGAAAG----------TTGTAAAAG--
i caePb3.Scfld02_0       I 245 C 0
e caeJap4.Scaffold18213     15092 58 +   720316 I
e caeRem4.Crem_Contig233    13624 72 -   113162 I

a score=12986.000000
s ce10.chrX               2268900 33 + 17718866 AAGATCCCAAAGTAGTGTTTCAAATATTTACTC
s cb4.chrX               17003563 27 - 21540570 AAGATGC-----CCGTGCT-GAAATATTCACTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    13696 29 -   113162 AAGATTC----GAAGTGCTCGAAATATTTACTC
i caeRem4.Crem_Contig233 I 72 C 0
s caeSp111.Scaffold576      40005 29 -   128984 AAGATCC----GAAACGTCCGAAATATTTACTC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029582 29 -  4147112 AAGATCC----AAAATGTCCGAAATATTTACTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     15092 58 +   720316 I

a score=29065.000000
s ce10.chrX               2268933 151 + 17718866 AAATTTCAC------CCCATATACTGAGAATGT-----TGAATTATTCATTACTGTGTACTC------------------------------------TCTCTCTCTCACGCCT------AGAATTTCAGAAATGTTTCTGC---A-----------------GTTT---TTTGGACA--A----AACC-GAATCAAATTTTATCTGGTCCATTTATTTTTTTCCAT-GCTTCAA
s cb4.chrX               17003590 182 - 21540570 GAATTTCGT------GCCCAATGTGGcacattt-----tgaataattcacCAGTGTGTACTCAaa----------------------cttctttttcgttttcccaTCCTcccccccaaaaatgtttcag-aagtttcgtgc-aaaacttcaaaaaattctcccTTT---TATGAATATTT----GATCTGTATCAAATTTTATTGGGTTCA------TCTATTCA-----GCAA
i cb4.chrX               C 0 I 7
s caeRem4.Crem_Contig233    13725 148 -   113162 AAATGTCG---------CCGATGTGGTGCAGTT-----TAAATAATTCACCACTGTGTACTCAAA----------------------CT---------TTTCCCCATCTTTTCc-------acgtttcaa-aattctccTGC-AAA-----------------CTCT---TATGAATACTA----AATT--TATCAACTTCTATGGGGTTCA------TCTTTCAAT-ATTGCAC
i caeRem4.Crem_Contig233 C 0 I 7
s caeSp111.Scaffold576      40034 149 -   128984 AAATGTCG-------ACCCAATGTGATGCGGTT-----TGAATAATTCACAACTGTGTACTCAaa----------------------ct---------tcttc--cccttttcc-------tcatttcaacACATCTCTTGc-aaa-----------------tttt---tatgaatacTA----AATC--GATCAACTTCTATTGGGTTCA------TCTTCCCAC-ATTGTAA
i caeSp111.Scaffold576   C 0 I 10
s caePb3.Scfld02_0        3029611 147 -  4147112 AAATATTG---------CCGATGCGTtgcattt-----tgaataattcaccAGTGTGTACTCAAA----------------------CT---------TCTTCCTCCCATCTCT-------tcgtttcagaaattttgctGCAAAA-----------------CTTT---TATGAATACGA----AATC--AATCAACTTTTAATGGGTCCA------TCTTTCT----TTGCAA
i caePb3.Scfld02_0       C 0 I 7
s caeJap4.Scaffold18213     15150 184 +   720316 aaaattcacttttttttctaaaatggTTGTTGtacaaataaataattcaTTGCTGTGTACTCAAAAAGAACGCATTTCCATCCACATCT---------TCCGTCTTCATCTTCC-------GCATTTCCTCAG--TTCGCGC-AAC-----------------CTTTTCCTATGAATATTATATGAATC--CATCTAATTTTATT-------------TCTTTCCATCACTATAT
i caeJap4.Scaffold18213  I 58 C 0

a score=-2248.000000
s ce10.chrX               2269084 16 + 17718866 TTTTATTTTAAAAAGT
s cb4.chrX               17003779  8 - 21540570 --------TAAAAAAG
i cb4.chrX               I 7 I 4
s caeRem4.Crem_Contig233    13880  2 -   113162 --------TA------
i caeRem4.Crem_Contig233 I 7 I 1
s caePb3.Scfld02_0        3029765  5 -  4147112 --------TAAAA---
i caePb3.Scfld02_0       I 7 C 0
s caeJap4.Scaffold18213     15334 16 +   720316 TTTTTCCGTaagaaca
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      40183 10 -   128984 I

a score=67419.000000
s ce10.chrX               2269100 137 + 17718866 -----GAAAACT-CACTTGGCAACACACTATACGTCATCTCATCTAAAG---CTTCATTTG---AGACGGGCGTTGCCTAGTCTTCCCGAGGGAGATCTC----AAGAAAAT-GTGCTCTCTG-AAAGATTGCAACTCGCGCTGCTGTTGAATTT
s cb4.chrX               17003791 110 - 21540570 -----ACAAACT-CACTTGGCA--ACACTATACGTCATTC--------G---CT---TTCA---AGACGGG-AGTGCCTACTCCTCCCGAGGGAGATCTAGGGGATGAAGAGAGTGCTTTCTA-AAATATTGtgact------------------
i cb4.chrX               I 4 C 0
s caeRem4.Crem_Contig233    13883 133 -   113162 -----GGAAACT-CACTTGGCG--AAACTATACGTCATTTTATCCGAAG---CTTTATTTG---AAACGGG-GTTGCCTAGTACTCCCTCGGGAGGTCTC----AAGAAAAGAgtgctttcaa-aaatattgcaaTT--CTTTTTCCTGAACTTT
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      40193 134 -   128984 -----GGAAACT-CACTGGGCA--ACACTATACGTCATTTCATCTGAAG---CTTGATTTG---AGACGGGCGTTGCCTAGATCTCCCCCGGGAGACCTC----AAGAAAAGAGTGCTCTCAAGAAATATTGCAAGT---TTTTATGTGAACTCT
i caeSp111.Scaffold576   I 10 C 0
s caePb3.Scfld02_0        3029770 140 -  4147112 ------AACACT-CACTTGGCA--ACACTATACGTCATTTCTTCCCAAGCTTCTTCATTTGGGAAGATGGGGGTTGCCTAGCTCTCCCTCGGGAGACCTC----AAGAAAAGAGTGCTTTCAAGAATTATTGCAACT--CTTTTCcgtgaatttt
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     15350 130 +   720316 taaaaaaaatctgCACTTGGCA--ACAACACACGTCAACGGAT-----G---TTTCGTTTG---AGACGGAGGTTGCCTAGTATTCCCTTGGG-----------AAGGAAAGAGTGCTTTCAA-AGTTATTGCAgctcttcctttttttaacttt
i caeJap4.Scaffold18213  C 0 I 2427

a score=95837.000000
s ce10.chrX               2269237 535 + 17718866  
s cb4.chrX               17003901 517 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    14016 553 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      40327 535 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3029910 515 -  4147112  
i caePb3.Scfld02_0       C 0 I 97
e caeJap4.Scaffold18213     15480 2427 +   720316 I

a score=546.000000
s ce10.chrX               2269772 2 + 17718866 AA
s caeRem4.Crem_Contig233    14569 2 -   113162 AA
i caeRem4.Crem_Contig233 C 0 I 586
s caeSp111.Scaffold576      40862 2 -   128984 AA
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3030425 97 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004418 0 - 21540570 C

a score=-2325.000000
s ce10.chrX               2269774 75 + 17718866 ------CTTTACGATAACACAGCAGTAGTGGAAAAC-AGGAAATTTGGA---GGAAATTTCCGAAGAAAATTTTTTGAAGGGAAT----
s cb4.chrX               17004418 79 - 21540570 ------CTTTACGATAACACAATCCTGAATTGAGGCTAAGAAAAATGGAGCGGGAGATACGCAAAATAGGCATTTCCAAGAAAGT----
i cb4.chrX               C 0 I 1707
s caeSp111.Scaffold576      40864 72 -   128984 CACTTTCTCTCCGA------AATTTTGTGACGACTC----ATAAATGGA-------AGACAAAAGATGAACGTTTTTTGgagatggaaa
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3030425 97 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=417.000000
s ce10.chrX               2269849 12 + 17718866 AAGCAGAGGTAA
s caeSp111.Scaffold576      40936 12 -   128984 aagaaagagcaa
i caeSp111.Scaffold576   C 0 I 487
e caePb3.Scfld02_0        3030425 97 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=0.000000
s ce10.chrX               2269861 5 + 17718866 ACGTT
e caePb3.Scfld02_0        3030425 97 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=446.000000
s ce10.chrX               2269866 87 + 17718866 TTTCGTTCAATGA---CTTTATTATTTC--AAACGACGGGAACACATTTTCCATCATCTTCGGAG-----CAAAGAGGGTTATTAAAATGCACGTTT
s caePb3.Scfld02_0        3030522 88 -  4147112 TTACGGGCAATGACGGCTATGTTTTTTcgtggaggagaagaacatAT------TCAGACTATGGGAtacccaaaaaaagttgtgagaA---ACATTT
i caePb3.Scfld02_0       I 97 I 42
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=0.000000
s ce10.chrX               2269953 45 + 17718866 TGTTACAATAAAATAAATAATTCAAAATGAAACTCGGAAAATGTT
e caePb3.Scfld02_0        3030610 42 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=545.000000
s ce10.chrX               2269998 65 + 17718866 TCATTCATTGTGATTTTGAGGATAA-----ATTTTGTAAAGTTATAAA------------ACATTGAATTTTTCCGTTTAAT
s caePb3.Scfld02_0        3030652 82 -  4147112 ttatgtTTTGTAACTTTTCGAACAATACCTATTTTtaacagtttgaaaatttggtgaaACACAAAGAAGATTTATTTCTAAT
i caePb3.Scfld02_0       I 42 I 189
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=0.000000
s ce10.chrX               2270063 162 + 17718866 TAAAGGCGGAGTGCGGAAGTATCATGGTACAACTTTTCAGAACAAAAATTGGAGAATTTTTATTTTAAGTCAAAAAATGGCGAAAACGGAGTTTGCGCCACTTCTCGAAATATCTAAAGCACTGGCGCATGTTTGAACCCCAACATTGCTAAAATATAAGAG
e caePb3.Scfld02_0        3030734 189 -  4147112 I
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=-4080.000000
s ce10.chrX               2270225 635 + 17718866  
s caePb3.Scfld02_0        3030923 629 -  4147112  
i caePb3.Scfld02_0       I 189 C 0
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeSp111.Scaffold576      40948 487 -   128984 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=273.000000
s ce10.chrX               2270860 1 + 17718866 T
s caeSp111.Scaffold576      41435 1 -   128984 T
i caeSp111.Scaffold576   I 487 C 0
s caePb3.Scfld02_0        3031552 1 -  4147112 T
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e cb4.chrX               17004497 1707 - 21540570 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=1939.000000
s ce10.chrX               2270861 5 + 17718866 TGATC
s cb4.chrX               17006204 5 - 21540570 TGACT
i cb4.chrX               I 1707 C 0
s caeSp111.Scaffold576      41436 5 -   128984 TGATC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3031553 5 -  4147112 TGATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     15480 2427 +   720316 I
e caeRem4.Crem_Contig233    14571 586 -   113162 I

a score=31525.000000
s ce10.chrX               2270866 111 + 17718866 TCAATTAATTACTCATCTAAAAATATTCC-AACTGCACGATTTGAA------GATGGATGAGTATGAATTGAAAACTCTTTATAGTCATGTACACCTTGCATGTTGACG-GAAGCTATC
s cb4.chrX               17006209 101 - 21540570 ACACTTGCTTATTCATCAGACATTATCCCGAACTGCACGTCTGAAATCTAATGATGGATGACTATGTCTACAG----------AATGATGCATAACTTGTAC--------GAAATGGCC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    15157 115 -   113162 TCGGTTTTTTAGCCATTTAATAATATTCAGAACTGCACGTCTGAAGACTAATGATGGATGAGTGTTTATTCAGAAG---TTGTAATCGTGCATAACTGGAATATCAATG-AAGATGTTC
i caeRem4.Crem_Contig233 I 586 C 0
s caeSp111.Scaffold576      41441 114 -   128984 TCAATTGATTATTCATC-ATTTATATCAAGAACTGCACGGCTGCGA-GTAATGATGAATGCGTGTTTATTCAGAAC---ATTTAATCATGCATAACTCGAATGTCAATGAGACATGTTC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3031558 115 -  4147112 CCAATCGCTTATTCACC-AATATTATCCAAAACTGCACGTCTGTAATAGAATGATGGATGGGTATTTATTCAAAAC---GTTTAATCATGCATAACTCGAATGTCAATGAGAGACGTTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     15480 2427 +   720316 I

a score=116598.000000
s ce10.chrX               2270977 417 + 17718866  
s cb4.chrX               17006310 429 - 21540570  
i cb4.chrX               C 0 I 34
s caeRem4.Crem_Contig233    15272 441 -   113162  
i caeRem4.Crem_Contig233 C 0 I 6
s caeSp111.Scaffold576      41555 394 -   128984  
i caeSp111.Scaffold576   C 0 I 7
s caePb3.Scfld02_0        3031673 454 -  4147112  
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     17907 435 +   720316  
i caeJap4.Scaffold18213  I 2427 C 0

a score=-497.000000
s ce10.chrX               2271394 30 + 17718866 ATTTTGAAAATCACTCTGTTATGACAGGGC
s caeRem4.Crem_Contig233    15719 19 -   113162 atcttTAGGGTTAAACTGG-----------
i caeRem4.Crem_Contig233 I 6 C 0
s caeSp111.Scaffold576      41956 19 -   128984 TTTTGAAGAGTTAAACTGG-----------
i caeSp111.Scaffold576   I 7 C 0
s caePb3.Scfld02_0        3032133 19 -  4147112 ttttgaggGGTTAAACTGG-----------
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213     18342 10 +   720316 ---tgggaaacta-----------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17006739 34 - 21540570 I

a score=7315.000000
s ce10.chrX               2271424 18 + 17718866 TTATTTTTAATAACGTCT
s cb4.chrX               17006773 18 - 21540570 TCATCATCAATAAcgttt
i cb4.chrX               I 34 I 5
s caeRem4.Crem_Contig233    15738 16 -   113162 --ATTATCAATAACGTCT
i caeRem4.Crem_Contig233 C 0 I 7
s caeSp111.Scaffold576      41975 16 -   128984 --ATTATCAATAACTTCT
i caeSp111.Scaffold576   C 0 I 7
s caePb3.Scfld02_0        3032152 16 -  4147112 --ATTATCAATAACTCCC
i caePb3.Scfld02_0       C 0 I 36
s caeJap4.Scaffold18213     18352 10 +   720316 ttttttttga--------
i caeJap4.Scaffold18213  C 0 C 0

a score=0.000000
s ce10.chrX               2271442 12 + 17718866 ACACTGCTCCGT
e caePb3.Scfld02_0        3032168 36 -  4147112 I
e caeJap4.Scaffold18213     18362  0 +   720316 C
e cb4.chrX               17006791  5 - 21540570 I
e caeSp111.Scaffold576      41991  7 -   128984 I
e caeRem4.Crem_Contig233    15754  7 -   113162 I

a score=-3715.000000
s ce10.chrX               2271454 35 + 17718866 TCTTACGAGTACTGATCCC--ATGATTTAACCCG-ACC
s cb4.chrX               17006796 33 - 21540570 gtgtgtgaTT-TTGACCCAACGtattttttcttg----
i cb4.chrX               I 5 I 1
s caeRem4.Crem_Contig233    15761 31 -   113162 TCATATGATT-CTGACCCA--GTGGCTTTCCCAG----
i caeRem4.Crem_Contig233 I 7 I 1
s caeSp111.Scaffold576      41998 32 -   128984 TAGTCAGATT-CTGACCCA--GTAGCTTTCCCAGT---
i caeSp111.Scaffold576   I 7 C 0
s caeJap4.Scaffold18213     18362 14 +   720316 ------gatt-tggTCTTA--AG---------------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3032168 36 -  4147112 I

a score=126643.000000
s ce10.chrX               2271489 334 + 17718866 -TCCAGAAAAAGAAACGC-----------------CGAAAAAAAAGAGATTAAG-GGAGAAATGAGTTCCTGGACAGATGGAGG------GAAAATTTTGGAAAATTGAGTTT------TGAGAAGATGAAAAT--------------------GTTTCCTTTCTT----------------------ATGAAACCCACGGCCGGAA--------------GTGTAC-------GAAGCACAAAACTCACGTTCTAATGTTCGCACAATTTCATTTTCCAAGCTGCTCTCGTCGTACGAAGCCCAAGCTCGGAAGATGTGTGAGGGGAGATTCAATAGCAAGTTGAGCACGGAAATTAGTATTGATCTCATTACCATTGCTGTCTTCTTTTTTGGGTTTCCG---TGGT-GTATTCGTTTGACGCTCTGAAA
s cb4.chrX               17006830 352 - 21540570 -caaaaagc--------------------------cccaaaaaaaaggattatcTAAAGAAAGG---------------AAGAg------gagaagtttc-aaaattgagttttcccagaaaaaagatgaacatttttccttcttctttttttgggtttccttttttccttattctcacttttttgggggaaaat------cCGGAA--------------GAGCAC-------AACACACACAACTTACGTTCTAGGACTTGCACGAATTCATGCTCCAAACTTCGTTCGTCATATGAAGCCCAGGCACGAAGGATGTGGGAGGGAAGGTTTAGGAAAAGATTGAGCACGGAGATCAAAATCGAACGCATCACCATTgccgtcttcttttttggattaccG---TAAT-GGACGCGTTTCACACTCtgtaa
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    15793 366 -   113162 -CAGAAAACATGGCGAG---TCTTTgtgaa--aaatagggaaaaagggattatgtagaaaaatgggttC----------GGTGa------gagaagtttc-aaaattgagtttt--cggcaaagaatcgaaaattt----tgcttctttttctggttcttcttttttt--------------------ggggaaC------CCGGAAATG----TGTTGTGAAGCACGACGAATAACACACAAAACTCACGTTCTAAcacatgaaaaatttcatggtCCATTGTTCGTTCGTCGTATGAAGCCAGGGCCCGGAAAATGTGTGTAGGGAGATTCAAAAGAAGATTGACAACAGAAATTACAATTGAACGCATAACCATGgctgttttctttttcggaTTCCCG---TAGT-GTACCCGTTTCACACTCTG---
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      42030 348 -   128984 -CACAAAAGATGACAAGCAGTCGCAgcgaa--agaaaag-gaaaatggatTATGTAGAAAAATGGGTTC----------GGTGG------gagaagtttcaaaaattgagttt---cgccgaaaagatgaaagt-------------ttttttggttcttttTC------------------------AGGGAAC------CCGGAAA----------TTTAAGCAT-------AACACAAAAAACGTACGTTCTAAAGCTCGAACAATGTCGTGTTGAAGGCTTTGTTCGTCGTATAACGCCATTGCTCGTAGAATATGAGAAGGCAAGTTTAGGAGAAGATTAAGTACAGAAATCAGGATGGATCTCATTACCATtgcagtttttttcttggggTTCCCGTATGGAT-GAACACGTTTGATACTCTGGAA
i caeSp111.Scaffold576   C 0 I 35
s caePb3.Scfld02_0        3032204 357 -  4147112 -tcaaaaacatgaaaagca-ccaaagcaag--gaaaaagcaaaaatggattatgtggaaaaaTGGGTTG----------GGTGg------gagaagtttc-aaaattgagttt---cgaGGAAAGAAtggaagttt--------ttcttttttggttctttttttg----------------------ggggaaC------CAGGAAATG----TGTTTTGAGGTTT-------GCCATGAAAAACTCACGTTCTAACACTTTCACCAAATCATTGTCCAAACTTCGTTCATCGTATGCAGCTAAGGCTCGTAACACATGAGTTGGAATATTCAGAAGGAGGTTAACAACGGAAATTAGAATTGAACGCATAACCATcgctgttttcttttttggattacCG---AGGT-GAATCCGTTTGGCACTCTGAAA
i caePb3.Scfld02_0       I 36 I 43
s caeJap4.Scaffold18213     18376 360 +   720316 TCCCAAAAGATAG-------ACGGAGCGGGTTGGCATGTCAAAAATGGATTATAAAGAAAAATGGGTTC----------TACGAGAagccgaaaatttttaacaattgAGTTT---CCACGg-----ccaacgttt--------ttttttttcttttttctgtttggacGAAGAAT------------GGGGAAC------CCGGAAATGAACATATTTTGG----C-------CATGCACAAAACTCACGTTCTAATGTCTGCACGGCATAGTTTGCTAGACTATTCTCGTCGTAAAGGGCCCAAAGACGAAATATGTGCATTGGAAGATTAAGGAGAAGATTAAGAACAGAAATCATGATCGATCGCATCACCATTGCGGTTTTCTTCTTTGAGTT-------TGATGGGGCCCGTTTCATACTCTG---
i caeJap4.Scaffold18213  C 0 C 0

a score=-3361.000000
s ce10.chrX               2271823 48 + 17718866 TTTAAAGAATTTTATGCTTTTCCATTAATCTAAATTTCAAAATTTCTT
s cb4.chrX               17007182 34 - 21540570 tttggaaaa--------------attaaattatattttaaaagatttt
i cb4.chrX               C 0 I 13
s caeRem4.Crem_Contig233    16159  9 -   113162 -------------------------------------TAAAAGATT--
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     18736 11 +   720316 -------------------------------------CAAAATTATCT
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3032561 43 -  4147112 I
e caeSp111.Scaffold576      42378 35 -   128984 I

a score=-4612.000000
s ce10.chrX               2271871 107 + 17718866 CTGTGAAGTGAATCAAATATATTTTGAACACACTAACGGTTTCGAGTATTATTTTTAATTTTTGCACAAAAATCACTGCGTCAGTACTGACTAATCAGAAAGTGAAA
s caeRem4.Crem_Contig233    16168  29 -   113162 -------ATGAAATAAATAG-----------------------------------------------------------GTCAATA------------GAAGTAACA
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     18747  40 +   720316 CTGTTTAGTGGAACTCACT------------------------------------------------------------ATCAGGA-------ATAAGAAACTTACC
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3032561  43 -  4147112 I
e cb4.chrX               17007216  13 - 21540570 I
e caeSp111.Scaffold576      42378  35 -   128984 I

a score=-662.000000
s ce10.chrX               2271978 115 + 17718866 GCATGTAGTTTTTTTTTTTTTGAAAAAAAAAGCTAATTCAAAATTAAGATCAAAATATATTGTTGGATTTTTTTAAAATGATTTTTTTTCATTTGAATAAAAGTATTCATGTCCT
s caeRem4.Crem_Contig233    16197  58 -   113162 TTAACtagtttgaattttcttg----------------------------------------------------aaaatacttttttttcaatccacTTACAG-----GTGTGTT
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3032561  43 -  4147112 I
e caeJap4.Scaffold18213     18787   0 +   720316 C
e cb4.chrX               17007216  13 - 21540570 I
e caeSp111.Scaffold576      42378  35 -   128984 I

a score=0.000000
s ce10.chrX               2272093 223 + 17718866 GGCCCGAAAGTGTTAGATTTTTACGTGGAACTTTTTGTCCATGTTCAGTTTAGGATTATAGTTTTTAAGAGAAAGCCTAAAAATGCAAACTTATTTCACGTTTTGATTAAATTACCATTTTTTAAAGAAATGAATTTGAAAACGTATTGGATAATTTTTTGAAACTACACAAGTACCAAAAAAAAGTTGTGTTTTACTTTGGATGCAAATTTGTTGGCTTTTG
e caePb3.Scfld02_0        3032561  43 -  4147112 I
e caeJap4.Scaffold18213     18787   0 +   720316 C
e cb4.chrX               17007216  13 - 21540570 I
e caeSp111.Scaffold576      42378  35 -   128984 I
e caeRem4.Crem_Contig233    16255   0 -   113162 C

a score=1083.000000
s ce10.chrX               2272316 15 + 17718866 CTTACCGGTGTATTC
s caeSp111.Scaffold576      42413 15 -   128984 CTAACCGGTGTATTT
i caeSp111.Scaffold576   I 35 C 0
e caePb3.Scfld02_0        3032561 43 -  4147112 I
e caeJap4.Scaffold18213     18787  0 +   720316 C
e cb4.chrX               17007216 13 - 21540570 I
e caeRem4.Crem_Contig233    16255  0 -   113162 C

a score=494.000000
s ce10.chrX               2272331 5 + 17718866 GTACT
s cb4.chrX               17007229 5 - 21540570 GTGTT
i cb4.chrX               I 13 C 0
s caePb3.Scfld02_0        3032604 5 -  4147112 GTATG
i caePb3.Scfld02_0       I 43 C 0
e caeJap4.Scaffold18213     18787 0 +   720316 C
e caeSp111.Scaffold576      42428 0 -   128984 C
e caeRem4.Crem_Contig233    16255 0 -   113162 C

a score=180.000000
s ce10.chrX               2272336 1 + 17718866 G
s cb4.chrX               17007234 1 - 21540570 A
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    16255 1 -   113162 A
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3032609 1 -  4147112 A
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     18787 0 +   720316 C
e caeSp111.Scaffold576      42428 0 -   128984 C

a score=42151.000000
s ce10.chrX               2272337 56 + 17718866 GCAGTTATTGAAATGGCCAAAGCGACATGTGCTTTATTGTCC-AAAGTATCTGTTTC
s cb4.chrX               17007235 56 - 21540570 GCAGTGATAGAAATAGCTAGAGCCACATGAGCTTTGTTATCC-AAGCTCTCCGTTTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    16256 57 -   113162 GCAGTGATTGATATGGCAAGTGCAACATGAGCCTTGTTATCCAAAGCTTCCAGTTCC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      42428 56 -   128984 GCCGTAATTGAAATTGCAAGAGCTACATGTGTTTGGTTGTCC-AATGTCTCTGTTTC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3032610 56 -  4147112 GCAGTAATTGAGATAGCAAGAGCTACATGACTGTTGTTATCC-AATGTCTCCGTTTC
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     18787 56 +   720316 GTAGTAATTGAGATAGCTAAAGCAACATGAGCTTTACTGTCC-AACGTGTCGCTTTC
i caeJap4.Scaffold18213  C 0 I 104

a score=-17142.000000
s ce10.chrX               2272393 14 + 17718866 CCCTGTATGAGAAA--------------------------------------------------------------
s cb4.chrX               17007291 14 - 21540570 A-CCGGGTGTGGAAA-------------------------------------------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    16313 56 -   113162 G-CTGAATGAGACAACctaaagaaa----------aatgttgattcgG--ACCGAAAACACAT-------TGTGCT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      42484 56 -   128984 G---GATTGAGAAAACCTAAATTAT-----------------GTTCCGTTATTGTGAACCCATGAACCGTTTAGTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3032666 63 -  4147112 ACCCGACTCAGAAAACCTTAATATTCCAGATTCAGGTTCATCATTCTATTATTGTCA-------------TTGATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     18843 104 +   720316 I

a score=299549.000000
s ce10.chrX               2272407 782 + 17718866  
s cb4.chrX               17007305 620 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    16369 721 -   113162  
i caeRem4.Crem_Contig233 C 0 I 155
s caeSp111.Scaffold576      42540 669 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3032729 708 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     18947 637 +   720316  
i caeJap4.Scaffold18213  I 104 I 314

a score=-264.000000
s ce10.chrX               2273189 3 + 17718866 TGT
s cb4.chrX               17007925 2 - 21540570 tg-
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      43209 3 -   128984 TAT
i caeSp111.Scaffold576   C 0 I 24
s caePb3.Scfld02_0        3033437 3 -  4147112 TGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I
e caeRem4.Crem_Contig233    17090 155 -   113162 I

a score=-10682.000000
s ce10.chrX               2273192 303 + 17718866 TCACCTCAGCTTTGAAA---------------GAAATTTGAGTTTTGATACTAAACATGAGA-----ACTAAAAGTGCTCACTTTTGGAATGCAATTATATTATATTCATTTTCCAGTAAAAAAACTTCGAGCAAGATTCAAGTTTTGTTTTAGATTT--TTTTCAGAGTTTTTTAT------AACTAATCCTAttaaagatg---gagtagtgaca---gtgagaaaatctatt-taaaatgtttatggcaccctgaccaaataatagttttaaaaaaattcataaacatattctaaatatttatacgatttattgaaaattgaaaaaatctcagtt-
s cb4.chrX               17007927 229 - 21540570 --------------------------------aaaaattgaatttg-----tgaagttaaga-----atttcga-caattttctataaaa----aagaTATGGTATC-----------------------AGCTCTATTAGAATCTTATCTTATACGTGCACtgtgagctcaatcat------ctcgatttttgtgaacGATATTAGATTggtttcaactgataaaacatttatcataaaTTCACCAagattta-------------------------atcagttgacaaattttcgatatct-----cttaat--ggaaccgagataat--tgagtt
i cb4.chrX               C 0 I 56
s caePb3.Scfld02_0        3033440 261 -  4147112 ---TCttagttttcaatgtttagataataacaaaaaattgagtttt-----tgatcaCGAGACGTTCATTCAGA-TTCACATCTGTAGAAT---TACATgtgatttt----------------------gagatttcttca---ctgtttttcaatttactgTTTGTGATGATTTATTACATCCTTTATTCTTATT-----TGTTCTGTCTGTctcacattaaaaaaaatttaat-tgaatttttcatgatcTC-------------------------TCTCAAagataaaat----atattt-----tatgaTTAGAAATAGATATAACCATAGGT-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I
e caeSp111.Scaffold576      43212  24 -   128984 I
e caeRem4.Crem_Contig233    17090 155 -   113162 I

a score=-992.000000
s ce10.chrX               2273495 88 + 17718866 tttgccacttttttggaagtcgTAATTTTATGTGTGTTCGAGCACTCCACACTGCT---ATAATTTTCTCACAAAGTGGCAAAAGTTTAAT
s caePb3.Scfld02_0        3033701 49 -  4147112 TT----------------------------------TTCAAGGCCTCAATTCTGCTAACACAACTCTCT---AAAGTTAAAAA-----GAG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I
e cb4.chrX               17008156 56 - 21540570 I
e caeSp111.Scaffold576      43212 24 -   128984 I
e caeRem4.Crem_Contig233    17090 155 -   113162 I

a score=-1723.000000
s ce10.chrX               2273583 25 + 17718866 AAGTCCCACTTTTTGAATCTCAGGA
s cb4.chrX               17008212 15 - 21540570 aaatgttattttttt----------
i cb4.chrX               I 56 C 0
s caePb3.Scfld02_0        3033750  8 -  4147112 AAATCGGG-----------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I
e caeSp111.Scaffold576      43212 24 -   128984 I
e caeRem4.Crem_Contig233    17090 155 -   113162 I

a score=-12945.000000
s ce10.chrX               2273608 136 + 17718866 TTTTT-GAAAAATGTTTTT--------------------TTTTTTGAAAATTTATACTATGATCTTCATACTTTGAGTTATACAATGTTACTGTAAAGTCCCGTTTCAGATTTACTACTTCTG------------AAATG---TCAGGATTTTTTTGTTGATTTTCG----ACTCC---
s cb4.chrX               17008227 126 - 21540570 ttttt-gtaatattctttcaatttcccgatccatattcattttttagtCTCTCGCC--------------------------------TATTG------CCTGTTTTACAATTCTTCTATCTT------------CACTTT--CCTTAGTCTTCACATTTATTTTCAGCGCTTTCCTTC
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      43236 105 -   128984 tctat-gCAAAATGTTTTATAAC----------------TTTTCTGAATGTTCATC--------------------------------TATTg-------atcattaaaaaatgttccCTCTA------------CAATCATCTCTGAAATTGCACGTCTCCTTTTA------CCCATC
i caeSp111.Scaffold576   I 24 C 0
s caePb3.Scfld02_0        3033758 117 -  4147112 -TTAtaacaaaatcattttcaacaatCGG---AGAAAAAGTTTCCCATTACTTATC--------------------------------------------ACCCCTAACATTTGTCAATCCTAGTTTTCATCAAccaatca--tctgaaaatcctcGTCTTTTCTTG------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I
e caeRem4.Crem_Contig233    17090 155 -   113162 I

a score=12656.000000
s ce10.chrX               2273744 35 + 17718866 ATG-TGATTTTTCATT-TTACTGC-AATTCTCACGCTC
s cb4.chrX               17008353 38 - 21540570 ATACTGATTTTTCATCTATTCATCAGATTCCCACGTTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    17245 35 -   113162 ATg-tgattttcaatc-atttctc-GATTCTCACGTTC
i caeRem4.Crem_Contig233 I 155 C 0
s caeSp111.Scaffold576      43341 34 -   128984 --CCTGATTTTTCATC-GCTTCAG-GATTCCCACGTTC
i caeSp111.Scaffold576   C 0 I 26
s caePb3.Scfld02_0        3033875 34 -  4147112 --aatgatttttcatc-atttcaa-gaTTCCCACGTTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I

a score=-4273.000000
s ce10.chrX               2273779 22 + 17718866 TACAAACACACACACACAACGA------
s cb4.chrX               17008391 14 - 21540570 ----------GACACACCACCACA----
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    17280 14 -   113162 ----------CCAACACGGAGTCT----
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3033909 21 -  4147112 ------CAC-ACTACACAGCCTTGGTTG
i caePb3.Scfld02_0       C 0 I 3
e caeJap4.Scaffold18213     19584 314 +   720316 I
e caeSp111.Scaffold576      43375 26 -   128984 I

a score=23039.000000
s ce10.chrX               2273801 132 + 17718866 ---TC---GCTGCTCTCACGCTTCCTTTTTATCCTTCCAATTT--CCATCACACTCGCCACC-CTAATT--ACACATCGCT------CACCGCAAAACTCTTTGCT-CGAAAAAAAAGTTTTGAAGAAAA-ATTCGCATAATACTT-GTTTG
s cb4.chrX               17008405 118 - 21540570 TCGCC---TCTG-TCTCACACTTCC--TTCATTCATTTGATTCAATTCTCA-----GCAACCACTAATTACACACATTGCT------CACCACTAAA--CTTTGCTCCAAG--------TTGGAGGACCT-ATTCTCAGAATATTT------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    17294 111 -   113162 TTGTC---GCAG-TCTCACACTTTC--TTTATTCTT---------TCTTTG-----GCAACC-CTAATT--ACACATTGCT------CACCACTACA--CTTTGCT-CGag--------tttgaagaaat-attttcataattttttgtttt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      43401 119 -   128984 ---TC---GCTG-TCTCACACTTCc--ttcaactct---tttt--tcttta-----gctGCC-CTAATT--ACCCATTGCTCAGCACTACCACCAAA--CTTTGAT-CGag--------tgtttgaaaataattcgcataatattttgtttt
i caeSp111.Scaffold576   I 26 C 0
s caePb3.Scfld02_0        3033933 110 -  4147112 ---TCCAAGCGG-TCTCAcacttcc--tttctttttcagtttt--tgcgcG-----ACAGCC-CTAATT--ACACA--------CACCACTACCAAA--CTTTGCT-CG---------------GAAAATAATTCTCATAATATTTTGTTTG
i caePb3.Scfld02_0       I 3 C 0
e caeJap4.Scaffold18213     19584 314 +   720316 I

a score=113561.000000
s ce10.chrX               2273933 345 + 17718866 TC-TTTCTGTGCTTTACTCAACA-------------ACACCAACTCACCGACATGGCAGCCAGCGGTAATCCCGATGTGGTTTCGAAGCGGACGACGCTTTTTCTGAAAAA-------TATGGGAACAATGAATATCAGAA-ATCATGGACAAATATTATGGAT------TAAAAATTTGTTGAAGTCTAAGAATTTGAAACGATCAGGCAGAAAAAAATTGTTGTTTCAAAAAATTTCACTGAT-AAGACGTGATAACAATAA-----ACTCACCTTGCTACTCGTATTAATTTCCGCAACACGTAAGTATTTAGAATAACTCCAGCTATTGGCACAGTGAATACCATTACCAAGTAGGCACTTTGAAGAA---AAGCCAT
s cb4.chrX               17008523 288 - 21540570 --GTTTTCGTGTTTTActc-gttcagaaaaaaaaaaacaa-aacttacCGACATGGCAGCCAGCGGTAATCCCGACGTGGTTTCGAAGCGAACAACGCTTTTCCTGAAGAA---GCAAAAA---CATGATGGAAATCAAAG-ATCGTCGACAAACA-----GAT------TAAA-----------------------------ATCAGCAG-------------------------CCACATGAT-------------CAATAAAGTCAACTCACCTTGCAAGTCGTATCAGCTTCCGTAAGACATATGTGTTTAGGATGACCCCAGCTATCGGTACAGTGAAAACCATTATCATATACGCTTTTTGAagga--gatac---
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    17405 311 -   113162 tcacttttgtgtCTTAGTC-CTC-------------ACACTAACTCACCGACATGGCAGCTAGTGGTAATCCTGACGAGGTTTCGAAGCGGACGAcgctttttctggaaaa---atgagaaatgaataacaaaaatcaaaa-atcatggacaaaca-----gatttaaaataaa-----------------------------ataagaaaagaggaaa------------actgCTCCCGTGATGATAACTTGCAAACAATAAAA-CTACTCACCTTGCTAATCGTATCAGCTTCCGTAAAACGTATGTGTTGAGAATGACTCCAGCGATTGGTACAGTGAATAGCATAACCATATAGGCACTTGCTATGA---ATGC---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      43520 299 -   128984 tctttcttgtgCTTTACTCTTTT-------------CCCCCAACTCACCGACATGGCAGCCAGCGGTAATCCCGACGTGGTTTCGAAGCGTACGACgctttttctggaatt---agaaaaaccaaataaCAGACATCGAAA-ATCACGAACAAACA-----GAT------TATG-----------------------------GGTGGCAAAAAAGAACGGG---------AGAGGTCTTGTGGT-----------ACTATTATATCAGACTTACCGGGCCAATCGTATCAATTTCCGCAGAACATATGTGTTGAGAATCACTCCGGCTATTGGTACAGTGAACACCATAACAAGATAAGCACTGTGAAGAA---AAGC---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034043 282 -  4147112 TCTCATCTGTGTTTTAATC-TTT-------------CCTTCAACTCACCGACATGGCTGCCAGTGGTAATCCCGACGTGGTTTCGAACCGGAGGAcgctttttctgaaattcgcagcaaaaatgaataacaGACATCAGAA-ATCATGAGCAAACA-----GCT------TAAA-----------------------------GTTAATGAGTAAACTAGTG---------CTAAGACCCCCG---------------TAATAAATAATACTTACCGTGCAAGGCGAAGAAGTTTCCGTAAAACATATGTGTTTAAAATTACTCCAGCTATGGGTACAGTGAATAACATaaaaaaaT------------------AAGC---
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     19898 258 +   720316 ---TCTATGTG---TGCTC-TGT-------------CTTAAAACTTACCGACATAGCCGCAAGTGGTAATCCTGAAGTAGTTTCGAAGCGCACTACACTTTTCCTGAAAAC--------------AAGACATACATTTCAATATCTCGAGCAATTA-----TGT------TTAA-----------------------------CCGAGTGG-------------------------TCTTCTCAA----------------------AAATTTACCTGGCCAGTCTGATTAACTTTCGGAGCACATAGGTGTTAAGGAGAACTCCAGCGATTGGAACTGTGAACACCATAAAGATGTAAACATTTCGAAGAACGGACAT---
i caeJap4.Scaffold18213  I 314 I 7827

a score=2044.000000
s ce10.chrX               2274278 15 + 17718866 ATTTATCGGGAAACA
s cb4.chrX               17008811 12 - 21540570 ---atttttgaaaca
i cb4.chrX               C 0 I 16
s caeRem4.Crem_Contig233    17716 12 -   113162 ---CATCCTGGTGCA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      43819 15 -   128984 ACTCATTATAAGGAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034325 15 -  4147112 ACTCATTTTGAGACA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=2954.000000
s ce10.chrX               2274293 20 + 17718866 -GTAGTGCTATTGCATTAAAC------
s caeRem4.Crem_Contig233    17728 20 -   113162 -ATAGTGCTATTGCAtcaatt------
i caeRem4.Crem_Contig233 C 0 I 12
s caeSp111.Scaffold576      43834 27 -   128984 AAATGTGCTATAGCATCAATTGGAAAC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034340 27 -  4147112 GTGTATGTTATCGCATCAatggaaaac
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008823 16 - 21540570 I

a score=12931.000000
s ce10.chrX               2274313  93 + 17718866 -------AGCAATGTGATGCGGACTGAAATAGAACATAAAATTGAGTTTGCAGACATATCCG--------GGG-----TGACGAGGGTAA----CTCGAAAAAT----CAAAGAATGAGTT
s cb4.chrX               17008839  91 - 21540570 -------AGTGATGTGATG--GCCTGAA-------ATAAAACTTGATTTGGTTCAATTTCCG--------GGAAGATACgtcaagagaaaaaa--gggaaaggt----CGAAGAATAGGTT
i cb4.chrX               I 16 I 2039
s caeRem4.Crem_Contig233    17760  95 -   113162 -------tttgaagtgatGTTGGCTGGA-------ATGAAATCGAGTTTGTTACAATTTCCGTTTAAATTTGGATAAAcgtcaaaagaaa--------aaaggt----caGAGAATATGGA
i caeRem4.Crem_Contig233 I 12 C 0
s caeSp111.Scaffold576      43861  98 -   128984 AGAAACTTTTGAAGTGACGCCGGCTGTA-------ATAAAATCGgatttgttgaaatttcCG--------GAAcaaaaggacaagacgaaaaatcaaagaatgt----caaagaata----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034367 101 -  4147112 agaaactttCGAA-TGACGCtgtctgaa-------atgaaattgagttCAATAAAATTTCCG--------GAACAGGAGGACAAGGGAAGAAGTCAAAGAATGTGAAacaaagaaag----
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=-23699.000000
s ce10.chrX               2274406 216 + 17718866 GAAAATTTTTTTGAAAAGCAGTTGTT---TTTACTTT---TAAAAATGCAATTCCAT-------GTTT--------------------CACCGTATACTTGGTAATTTCTAGATGTTAATTAACCT-------------ACAACAAATTTAATCGATATTTTAGATTTTCAC----------AATAAATGTTCAAT------AAAATTGTAACATATGATATTAATTGAGACCAGTAATTGAAAAAA------ATTAAAATA-----------GTTGTTCGC--A-GAATA---GAAACAA
s caeRem4.Crem_Contig233    17855 243 -   113162 GAA--------------------------cagacttt-tgaaaaatctaagaacaat--------ttt--------------------catt-tgaaagttccaatataacattttcaaatagtGTAAtccagaataaaaaaataaccAAACAGAATTCTTGcaattgaaacatttagagtaaaaaaacattttgcagTCAAATAGCTCGAACAAGTGGACTTGATTATTTCTATTCACCAGAaacattttccatcaaaatatttaatatgatttttctctc--atcCAGACAGCAAACAA
i caeRem4.Crem_Contig233 C 0 I 80
s caeSp111.Scaffold576      43959 208 -   128984 gaaaactttccaaaaaactgctT------CAAATTTTCCGTTAAAGTCAAAAATCAT----TATCTTTTAg-----------------cttt-tgaatttatttatttttcaactacATACAACTT--------------TAACAATTGAATGTGATTATTTCTATTGAAA------------CGAAATGTTTCTA--------------------TGGATTT-ATGATTTAGAGactttgaaaacg---------aaaaca--------aactttactttccggtgaaaa-atgaaataa
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034468 228 -  4147112 gaaaagaagttATATATTTATTTACTGTGAAGAATTCATGCAAAAACTAGAACTCATAAAACAtgtttatggaaaaaacagcATAATACATC-TAAAGCATCATATTTTGCACAATTGTGCATTTT--------------GAACAATCAAGTTCGATTGTTTCCTTTCaagc----------tcaaaatgtttcac--------------------tGAACCC-ATGTTTTATAGGTTATAAACtca---------acaaaa-------------tgttttc--atgaaCA---TAAATAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I

a score=-2425.000000
s ce10.chrX               2274622 84 + 17718866 TTTGAGGTATAGCTACAACACACTCGCTAATTATCAACTCAAAAGAAACTTATATTTATATTCAAACTTCAAACAATTCATAAA
s caeSp111.Scaffold576      44167 53 -   128984 tt---------gtttCAGTTACCTATCTCATGATC---------GGGAA--------ATATCGAAATTCCAGACT-----CGAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3034696 52 -  4147112 TC---------GTTTCAATTTCCGTTGTAATGTCT---------GGAAC--------GCTATAAAATTTCATGCT------AAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeRem4.Crem_Contig233    18098 80 -   113162 I

a score=-3227.000000
s ce10.chrX               2274706 394 + 17718866 GGTTTT-AACCTTAAATTATGTCTAGAAAAATGAGTTTTGTATG----T-----TTGGAAACATATCATTTTCACAAAAAAATCCACAATAACCA--------TTCAAA----------------------ATCAAACAGTTAAGTGTGCAAAGTTCAATCAAATAAAGAA---TTAAGAACTTGTG--------ATAATACTCATATGATGAG-------------TTCACAG----------------------TAGCAGAAATGTCA-----AATAAACCCGATCAAAAAATGTGGGGAGTTCTGGGGTAGGAAAACATGGAACAAAAATAATTGAGAA--------AAGGGAAAACAACGATTCCAAAGTCAGTGAAGTCAGCAAAACCTGTTC-AAGTTTAGCCTCTCGAATTGACGCAAAAACCGTGATCA--------GTTATTTCATAAAGTATGA-AAACCAACCCTTGGCTCATCTTGCCTTCTTCCGTCAGA
s caeRem4.Crem_Contig233    18178 402 -   113162 GGTTTT-GACTTCAAa-agtgtttttgaaataaaataacttGTGACTTTGCAGCTCGACAATATTTTGAC-----------------AGTGATCAATTTAAATCTCAAACTAACACTAGCTATGAA-----ATCAAACCACGAGAGGTGCGCAGTGCAATCAAACaaaacgattttcaaaactgttc----tTAGAGCCAA-AGAAATGACTGG-------------TTCATGG----------------------AAATAACCACGTGC-----AAGAAACC------ACCAATGATGGGAGTT--------AAAGAATATGA----------ATACAGaagcaaaaatgaaagaaaacaagGATTTTCTGATTC-TCACGTCAGAGAAATCCGTGCAAAGTTGACTCCAGC----CGACGCATGAACCCTTATTC-GGCCACTGATTTAATGAAAATTGTCT-ATATCAAAATTCGGATCATCTGATATTGTGCCGTCAG-
i caeRem4.Crem_Contig233 I 80 C 0
s caeSp111.Scaffold576      44220 383 -   128984 AATAATAAGgctcaaattatttttctctaaacAAAGTTCATGTGACTTT---TGTTattaaactttttgatt---------------actAATTG--------TTCAAACTATGAAATGCGGAAACTTGCTTGCACAGATGAAAGAGTGCAAAGGATTGGTAAataaagaa---ttaaaaactcctgatttttaaatttagcggaaataaattgaattta--cattattcataaat--------------------aaatggaaatgaattggagaa-aaagg------aagaacgTCA-----------------------------------ATTCAGAAG-------ACTGGAAAACAAGGATTTCCAGTTTC-CCACGTCACAAAAACCTGTGCAAAGTTTACTAAGTCG--TAGACGCCTAAACCCTGATTCAAACCATGATCTAACCAAACGTCGTCT----CTATATTT--GATAAT-----------TCTTCAGA
i caeSp111.Scaffold576   C 0 I 17
s caePb3.Scfld02_0        3034748 428 -  4147112 AATGAT-gtgttca---tattttttgaaaaccaa--tccTTATGACTTT-----TTGTCAATTTATTGGTTT-----------CCTCACTGACTG--------TTTGAACTGAGAAATGCAATGAATGAGTAACAAACTTGAGGAAGTGCAAAATAAAGTTAAACAAAGTA---TTAAGAGCAGATG--------ATACAATACAtatgatttgattttctttactCTTCATTAATGCTGGTGAAAAGttagaagaaaataaagacgaattcgagaagaaaac------aaaaacggcATAAAGT--------GAAGAACAGAG---------CATTCAGAA--------CCGGAAAAACAaggatttccagattc-tcacgTCAGAAAAACCTGTTCAAAGTTTAGCAAGTCT--ACGACGCATGAACCCTGATTTTGGCCTCTGACAAATTAAGCAGTGTCTTGAATTAAACTTCGGATCATCTAGTCTTGTGCCGTCAAA
i caePb3.Scfld02_0       C 0 I 9
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I

a score=575.000000
s ce10.chrX               2275100 12 + 17718866 CAACCATTTTGG
s caeRem4.Crem_Contig233    18580 10 -   113162 --ACCGGTTGGG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      44620 12 -   128984 CAAACAGGTGGC
i caeSp111.Scaffold576   I 17 C 0
e caePb3.Scfld02_0        3035176  9 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I

a score=21805.000000
s ce10.chrX               2275112 134 + 17718866 TGATAAGCTGGCCTAAACACAGATTGATCTAACATTT--TCGCGTGG--------TTTTAAAGCGTCATCCTCGCAAACTCAAGTGTTTTTAGTGACGACAAATCAAAA-GCAAGCTACTAAAAATA-CAAGGAAATTCAGAGA--AA
s caeRem4.Crem_Contig233    18590 137 -   113162 TGATAATCGT--TTAATATCAGATTTACCAAACTTTTCCTCGCGCAAGAAATTCGTTCT---GAGATGTGTTCA-GGACTCAAGTGTTTTTAGTGACGGCAAATCAAAAGGCACGTTGCtaaaaata-ctggaaaaataaaaaa----
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      44632 127 -   128984 AGATAAACTG--ATAGTATCCGATTGGTCAAACCTTT-CTTGCGCAA--------TAT------GAGGTGCTTA-AGTCTCGAATCTTTTTAGTGACGATGAATCAAAA-GCAAGTTGctaaaaatatcaaaaaaaataagaaaga--
i caeSp111.Scaffold576   C 0 I 2320
s caePb3.Scfld02_0        3035185 123 -  4147112 TGTTAAGCCT--TTAATATCAGATTGACCAAAACCTT-----TGCGA--------TTTC---CCGCTGTGCTCG-GAACTCAAGTGTTTTTAGTGACGGAGAATGAGAA-GCAAGTTGctaaaaata-ctggaaaaataagaaa----
i caePb3.Scfld02_0       I 9 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I

a score=873.000000
s ce10.chrX               2275246 3 + 17718866 GCA
s caeRem4.Crem_Contig233    18727 3 -   113162 gca
i caeRem4.Crem_Contig233 C 0 I 128
s caePb3.Scfld02_0        3035308 3 -  4147112 gca
i caePb3.Scfld02_0       C 0 I 144
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=0.000000
s ce10.chrX               2275249 727 + 17718866  
e caePb3.Scfld02_0        3035311 144 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I
e caeRem4.Crem_Contig233    18730 128 -   113162 I

a score=68.000000
s ce10.chrX               2275976 3 + 17718866 TCA
s caeRem4.Crem_Contig233    18858 3 -   113162 tct
i caeRem4.Crem_Contig233 I 128 C 0
e caePb3.Scfld02_0        3035311 144 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=16807.000000
s ce10.chrX               2275979 192 + 17718866 CCAAATTATTCTCATTAATTAAAAAAAAGGAAAGTGAATCACTCATCATCAAAACGCCCCGTTGGTACATATACTTTTTCCTACAAAGACGACTGAATGT----TAAATTATGTAAAAAG-TGTCGGAAACTAGTATGTGTCAACAAGTGAGGGCACCCCTCTTCTTCCACCTACATT---ATA-GGCATGTTGTAGTATA
s caeRem4.Crem_Contig233    18861 188 -   113162 ccAAATTATTCTCATTAATC--AGAGAAGATACGTGAATCACTCATCGGA-CAACGCTTC-TTGGTATACAT--TTCCTCATC-----GAGACTGAATGCAAAATGAATTATGTAAAAAAGTGTCGAGAACTAATAAATGTCCACAAGTGAGGACACCCTTAGAC--CACCCTACATTGAAACGTTGAGTTGTTTGGTAtc
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3035455 186 -  4147112 CCAAATTATTCTCATTAATC--AGGTAAGATATATGAATCATTCTTCATC-TAACACTTC-TTGGTACATGT--TTCCTTGTCAGGAAAAGACTGAATGCCAAATGAATTATGCaaaaaa------aGTGCTAGGGCGTGTCAATAAATGAGGGCATCCCTTTTC--CCACCTACCAGGCTACA-TAAATTTTGGAGGATA
i caePb3.Scfld02_0       I 144 I 52
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=-562.000000
s ce10.chrX               2276171 27 + 17718866 GATTAGAACCACTAGGTGGGTGGCTCA
s caeRem4.Crem_Contig233    19049 24 -   113162 ag--aaaactataaaacaaA-GTTTCA
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3035641 52 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=-14604.000000
s ce10.chrX               2276198 231 + 17718866 TGTT------ATTCCTGGAT--GAGGTTAACAAAAAA-----TTTGCAG----GATATGATTATATA-----CACTTAATCCTC-----ACATCGGTAAACAGGAAAAA---------------------------------------------------GTCAAACATTT------ATCGAACTTTTTGAAA-----------ATCTGATTTTCGAGTTTTTTTTTTCAAAA---GCAATAA-------------------------AAATATGCTTTACTCATT-CAAAACATTAA-ACTAGAACATAGAGATTCAATTA----------TAGAAACCCCTGAAAAATAGAAAG----CAAAAATAAT
s caeRem4.Crem_Contig233    19073 245 -   113162 ----------AGCTAGAAAT--GggattagaaaatgaaatccGTTCCCAAAATAA--CGATTGGGTAGGGTTTACGTAACcatctaaaaata-----aaacaaagtaat-gggtttgcaaa---------------------------------------aagaaa-----------ctagaaaaatttgaacgatCAAATAACAACCAA-----ATGTGATGATGCTCAACTATTGCCGCAA----------------------GATAAATGATTTCGATGAGGT-CAGAATATAAG-TGTTGATCAGAATACTTC---------------TTGAAAAGCCTAACAAG-----------GAAGAATAGT
i caeRem4.Crem_Contig233 C 0 I 18
s caePb3.Scfld02_0        3035693 363 -  4147112 tgttgttttgatttgaaaatgcgAGATAGgaagaatacattttttgcagaaacgaTTCGACCTACTACTG--AACATAATCCATCAGAAATATC---AAGCAATACAATCGGTTTTGCAGAGTTGCAGACTATCTAGAGTGGAGAATTCAGCTCAAACCTaagaaatgtttgtttttccaaaataatcaaaaatacagAGCAGCAATTGATTT--ATCTTACATGGTTTAAAAATTGCCCGAATTGTATCTAGTACGGGTCAGTCGTCAAATATTTATGATAGAATGCCGAATGGGAGCTCTTCAACGTGAGATTTCCAATATGGTTCGAGTtagaaaatgctcaaaattcgaaagttgCAAAAGATAAA
i caePb3.Scfld02_0       I 52 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=-232.000000
s ce10.chrX               2276429 38 + 17718866 TCTGAGGTACAATATTGAA----GTACAGTGTGA-------AAACAAGC
s caePb3.Scfld02_0        3036056 46 -  4147112 TTTCAGG---AAGCTTGAAAGATGTTCGAGGTGACATCTCCAAATATGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I
e caeRem4.Crem_Contig233    19318 18 -   113162 I

a score=-2155.000000
s ce10.chrX               2276467 11 + 17718866 --------AA---------------------TTTTGGAGA----
s caeRem4.Crem_Contig233    19336 11 -   113162 --------TA---------------------TTTCGAAGA----
i caeRem4.Crem_Contig233 I 18 I 4
s caePb3.Scfld02_0        3036102 44 -  4147112 AACAATAGTAACAAACATTCACCCAGAACATTTTCTTAGAGTTG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17008930 2039 - 21540570 I
e caeSp111.Scaffold576      44759 2320 -   128984 I

a score=67007.000000
s ce10.chrX               2276478 97 + 17718866 TGATGATGGCACGGATAGTATGTAGATTTGTTGCGAGAATATTCATTAGAAAGGGCGGGATATAGGAAATGCGCATACCAATCGCTTTCT--CGTCTCT--
s cb4.chrX               17010969 98 - 21540570 TGATGATGGCATGGATAGTATGCAGATTTG-TGCACGAATATTCATTAG-AAGGGCGGGACATCGGAAATGCGCATACCAAGCA-TTTCTTGCTCATCTCT
i cb4.chrX               I 2039 I 307
s caeRem4.Crem_Contig233    19351 94 -   113162 TGATGATGGCATAGATAGTATGTAGATTCG-TGCACGAATATTCATTAG-GAGGGCGGGACATTGGAAATGCGCATACCAAACA-TTTCT--CACATCT--
i caeRem4.Crem_Contig233 I 4 C 0
s caeSp111.Scaffold576      47079 94 -   128984 TGATGATGGCATAGATAGTATGTAGATTTG-TGCAAGAATATTCATTAG-AAGGGCGGGACATCGGAAATGCGCATACCAAACA-TTTCC--CACATCT--
i caeSp111.Scaffold576   I 2320 C 0
s caePb3.Scfld02_0        3036146 94 -  4147112 TGATGATGGCATAGATAGTATGTAGATTTG-CCCAAGAATATTCATTAG-GAGGGCGGGACATCGGAAATGCGCATACCAAACA-TTTCT--CACATCC--
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=2379.000000
s ce10.chrX               2276575 8 + 17718866 TTCATGTT
s caeRem4.Crem_Contig233    19445 8 -   113162 CTCTTACT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      47173 8 -   128984 TTCGTACT
i caeSp111.Scaffold576   C 0 I 319
s caePb3.Scfld02_0        3036240 8 -  4147112 CTCGTACT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I

a score=1117.000000
s ce10.chrX               2276583 10 + 17718866 TTCAGCAGCT
s caeRem4.Crem_Contig233    19453 10 -   113162 CCAAGAAACT
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3036248 10 -  4147112 CCGAGAAACT
i caePb3.Scfld02_0       C 0 I 333
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I
e caeSp111.Scaffold576      47181 319 -   128984 I

a score=406.000000
s ce10.chrX               2276593 73 + 17718866 T-----TACATATACA-AAAAGTATACGACTGACAGAACAGTTCACTTCCATTGAAAGAACATTTATAGAATGACTAAA
s caeRem4.Crem_Contig233    19463 73 -   113162 CATTCAGACATTTACATTAAACTAGGCGAC--AAGGAACGGgttgtttc----aaaagttcatattgaaaatgagtaaa
i caeRem4.Crem_Contig233 C 0 I 190
e caePb3.Scfld02_0        3036258 333 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I
e caeSp111.Scaffold576      47181 319 -   128984 I

a score=0.000000
s ce10.chrX               2276666 977 + 17718866  
e caePb3.Scfld02_0        3036258 333 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I
e caeSp111.Scaffold576      47181 319 -   128984 I
e caeRem4.Crem_Contig233    19536 190 -   113162 I

a score=487.000000
s ce10.chrX               2277643 30 + 17718866 AGTACTCCAAAATTGTAAAAGATTTGTCTC
s caeRem4.Crem_Contig233    19726 30 -   113162 agAATTTCTAAATGTGACAAGGTCTGGTTG
i caeRem4.Crem_Contig233 I 190 C 0
e caePb3.Scfld02_0        3036258 333 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I
e caeSp111.Scaffold576      47181 319 -   128984 I

a score=3404.000000
s ce10.chrX               2277673 19 + 17718866 AAGTAAACGTGTCTTAGAG
s caeRem4.Crem_Contig233    19756 19 -   113162 AAGTAAATGTGGCCTGAAG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      47500 19 -   128984 AAGTTAACGTGACCTGAAG
i caeSp111.Scaffold576   I 319 I 6
e caePb3.Scfld02_0        3036258 333 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I

a score=1787.000000
s ce10.chrX               2277692 14 + 17718866 -------------TTTCTCCTGGTCCA
s caeRem4.Crem_Contig233    19775 27 -   113162 TTCAACTgcttcgttttcttgcttcCA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      47525 14 -   128984 -------------TTCCTTTGGTTTCA
i caeSp111.Scaffold576   I 6 C 0
s caePb3.Scfld02_0        3036591 14 -  4147112 -------------ttgctttagtTCCA
i caePb3.Scfld02_0       I 333 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011067 307 - 21540570 I

a score=50564.000000
s ce10.chrX               2277706 66 + 17718866 TCCCACACTCAAGTCACAGAGTTGTCAAATATTCATCCTTGCTTAGCAATTTCACGTGGGTTGACT
s cb4.chrX               17011374 66 - 21540570 TCCTCCACTCAAGTCACAACGTCTTCAAATATTCGTCCTTGCTTAGCGATTTCACGTGGGATGGCT
i cb4.chrX               I 307 I 20
s caeRem4.Crem_Contig233    19802 66 -   113162 TCCCACACTCAAGTCACaacgttttcaaatattcatcCTTGCTTAGCAATTTCACGTGggatgatt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      47539 61 -   128984 TCCCACACTCAag-----acgttttcaaatattcattcTTGCTTAGCGATTTCACGTGGGATgact
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3036605 66 -  4147112 TCCCACACTCAAGTCACAACGTCTTCAAATATTCATCCTTGCTTAGCAATTTCACGTGGGATGACT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=-1617.000000
s ce10.chrX               2277772 17 + 17718866 -TTAAAAAATGCAACTCC-----
s caeRem4.Crem_Contig233    19868 18 -   113162 tctgaaaaacgcaaGACT-----
i caeRem4.Crem_Contig233 C 0 I 8
s caeSp111.Scaffold576      47600 23 -   128984 ccaaaaaaaagagaaaccagTCT
i caeSp111.Scaffold576   C 0 I 10
s caePb3.Scfld02_0        3036671 17 -  4147112 TCGGA------AGAAACTTGTCT
i caePb3.Scfld02_0       C 0 I 15
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17011440 20 - 21540570 I

a score=36982.000000
s ce10.chrX               2277789 146 + 17718866 -------TTCCAT---------ATTGC---AAAAA----TCACAT---CAATCCAGTGCA------AAAAAAACGAAA-TGGACGATG---AAAGTGTGAGTATGT------AGATGTAG-------------------------GAAAGCAATAGTTCTTGGAATGCACTGCTCCACTAATTAGAGTTGAAG--AAAAAATATATAC-GCAGTGG
s cb4.chrX               17011460 200 - 21540570 TTCCAACCTACTTGGTTAGagtgttgcaaaaaaaacatggcactt---atttct----------agaaaaaaaccaag-tCGACCAAAAAGAAGGAGTGGGTGTATCgaagaagatatattggagaagatagctcaagaagaagaagaagaagaagttcaagaCACGCACTGCTCAACTAATTAGAATGGAAG--CGAAGATATGGAAGGCGTTGG
i cb4.chrX               I 20 C 0
s caeRem4.Crem_Contig233    19894 179 -   113162 TTCCAACCTACTT--TTGGAGTGTTGC---AAAAACATCACACTT---ATCTTCaaataaagtgaaaaaaaaaccgagaTAGATGATATACAAAAAGTGGGTGTGT------AGATAtat----------------------agaataaaaagaagttCGAGACACGCACTCCTCAACTAATtagaatggaagaaaaaagatatggAA-GTGAGGG
i caeRem4.Crem_Contig233 I 8 C 0
s caeSp111.Scaffold576      47633 147 -   128984 -------CTACAT-TTCAGTGAGTTGC---AAG---------------ATATTCcagcag------aaaaaaacc-ag-CAATTCACG---AAAGAATGGGTGTGT----GCAGATATGT-------------------------GTAAGACAAAGTTCGTGGCACGCACTCTTCAACTAATtagaatggaag--agaagataTCGAA-GAAGTGG
i caeSp111.Scaffold576   I 10 C 0
s caePb3.Scfld02_0        3036703 150 -  4147112 -------CTACTT---------GTTGC---AAAA-----GCACTTACTATTTTCaggcaa----ataaaaaaaccaag-CAGACCATA---AAGGAGTGGGTGTGT------AGATATAT-------------------------AGAAAGAAAAGTTCGAGGCACGCACTCCTCAACTAATtagaatggaaa--gaaagatATAGAA-GAAGTGG
i caePb3.Scfld02_0       I 15 I 101
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=-10179.000000
s ce10.chrX               2277935 477 + 17718866  
s cb4.chrX               17011660 432 - 21540570  
i cb4.chrX               C 0 I 915
s caeRem4.Crem_Contig233    20073 389 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      47780 422 -   128984  
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=-21005.000000
s ce10.chrX               2278412 539 + 17718866  
s caeRem4.Crem_Contig233    20462 272 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      48202 343 -   128984  
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17012092 915 - 21540570 I

a score=23035.000000
s ce10.chrX               2278951 158 + 17718866 AACACGTTCCA----------AAATGATTGACAAGAGCTTACATC-----GCAGAGGCAATTCAAACA---------AG------------------------CACTCAAAAACCTTTC-------------ATTTCTTTTCTGCT----------TCTTTTGGAATTTCGTGAAAAAGT------CAAGTTTAGAATTTCCGGAA-TTCCCACGCCAATTCGGACGTTCTAATTC
s cb4.chrX               17013007 198 - 21540570 aaaacgttccgattcttgaaaaaatgattgacaAGATCGCCCCACAGGAGGAGGAGGCAATTCAAACT--TGTTTGAAGTAGAGAGTAGAAGATCACTACTACTACTCAAAAATCTCAT-------------GTTCTTATTTTTAG----------TCGACCATtcttatttcgaaaaac------ga------gAAGCTCCAATA-TTCCCACGCTTCTTCGGACGTTCTGATTC
i cb4.chrX               I 915 I 3021
s caeRem4.Crem_Contig233    20734 182 -   113162 ---------CGATTCTTG---AAATGATTGACAAGAGCTCACATC----GACAGAGGCAATTCAAACT--TGTTTGAAG------------------------cactcaaaaatctttt---tctca-agCGGCTTCTATTTTGAA--CAAGAATCTCGTTTGTGTCGGACTAGAGAAGC------GGCGCCttgaatttccgaaatttctcaCGCTCATTCGAACGTTCTAATTC
i caeRem4.Crem_Contig233 C 0 I 86
s caeSp111.Scaffold576      48545 184 -   128984 ---------CGATTCTTG---AAATGATTGACAAGAGCTCACATC----GAAAAGGCAAATCAAAACTTGTGTTTGAAG------------------------CACTCAAAcatcttctgtttttcatcgTGAATTCTATTCTGAATCCAAG----TAGTCTATG-------AGAGAAGCTTAAGTGATGCTTtgaatttccgaaa-ttctCACGCTCATTCGGACGTTctaattc
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=1160.000000
s ce10.chrX               2279109 69 + 17718866 --TGAGGACCGGAGTTTAATTTGTCTGGAGGAAGAAAAGACAAGTTT--------------TTTTCTGAATTGGAAATGTTAAGT
s caeSp111.Scaffold576      48729 84 -   128984 aattgaaacaaagAGCGAGTTTGTCT-GACAACTAGATTACAAGTTTTCAAGCAACCCTTATTTCCTGGATTGAAAGTGTTAGGT
i caeSp111.Scaffold576   C 0 I 2
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeRem4.Crem_Contig233    20916 86 -   113162 I

a score=0.000000
s ce10.chrX               2279178 340 + 17718866 TTTCATTCAAAAATAAACTATTTTCAGTGGGAATTTCGTACAAATGATCTCATAACAGTAAAAAATGTTGTTATAAAACACTTCTGAATTTTCTTAAAATATTTTCAAAAATTTCATTCAATGTTTTCGTAAATTGTCAAATGTTTCAAAAACTGTGGTTTTTTTTAAATAAATTCAAACATTGCCGCAAGCACACATTTAAAACGCAAGTAAAATATAAAACTTGTAGAAAAATTTTTTTGATCGACTTTAAACAATTTTAGACTAAACCCATTTAAATAACTTTATCAATAAGAAAATGGATATTTTCAATTTTGATAAAAAAATTTTCACATCCGCA
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      48813   2 -   128984 I
e caeRem4.Crem_Contig233    20916  86 -   113162 I

a score=121.000000
s ce10.chrX               2279518 27 + 17718866 TTCACTACAAAACTTCTAGTTCTGAAG
s caeRem4.Crem_Contig233    21002 26 -   113162 TTTGCGACCAAATTTGTAGC-AGGTGG
i caeRem4.Crem_Contig233 I 86 C 0
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      48813  2 -   128984 I

a score=27487.000000
s ce10.chrX               2279545 257 + 17718866 GTGTAAAAAGATACTTTTTGGCACGAGGCA-----------------CAGGCAAAAGGTTATGTTGCAAATATTAAAGAACC-TCTGACGCACTAT------TGTTGATCTAACAATATTCAAAACTGATACAATTGCGACAT----ACATCCCCGAACCACAGAAA----------TGAAAAAAAACATGAGAAA--AGAATTTTAC-ATTTTAATGGAACTTTG-TCCTAAAATTGAATTGGTTGCGGTGGAG-----GGTGGGTGAGTGGACAGT--TAGCGAGAAGTTTCTACTATTTCTTG
s caeRem4.Crem_Contig233    21028 262 -   113162 GTGTAAAAAGATACTTTCTGGCACGAGGGA-----------------TGGATGAAAGGTTA-------------GGAATGCA-TCTGACGCATTATTCAGAATGTTGACCTAACATGAttgaaaactagaa-------agaaTATGAATATGTTTCGACAACTAACA---ATAGACCAGACAGATAACAAAAAGAGGCGGAATGTTGC-GTTTTAATGGAACCTCG-ccctgaaattgaattgataGAGGTGGGGGTAAAGGTGGATGAATGGACAATGATGGGGGGAAGTCTAT-CTATTTTTTG
i caeRem4.Crem_Contig233 C 0 I 13
s caeSp111.Scaffold576      48815 281 -   128984 GTGTAAAAAGATACTTTCTGGCACGAGGGAGTAATGCAGTAAAAGGGCCGATGAAAGGTTA-------------GAAACACGTTCTGACGCATTATTCAGAATGTTGACCTAACATGATTGAAAAACCGAATAAATGCGGAATATGAATATGTTTCAACAacagaaacacaaaaaccaGACAGATGACAGAAAGAA--GGGAAGTTGCAATTTTAATGGAACCTTGTccctgaaattgaattggtTGAGGTGCG------GGTGGGTGAATGGACAATGAT---GGGAaatttct-ctatctcttt
i caeSp111.Scaffold576   I 2 I 6
e caePb3.Scfld02_0        3036853 101 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I

a score=120439.000000
s ce10.chrX               2279802 732 + 17718866  
s caeRem4.Crem_Contig233    21303 746 -   113162  
i caeRem4.Crem_Contig233 I 13 C 0
s caeSp111.Scaffold576      49102 750 -   128984  
i caeSp111.Scaffold576   I 6 I 557
s caePb3.Scfld02_0        3036954 753 -  4147112  
i caePb3.Scfld02_0       I 101 I 6
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I

a score=-33735.000000
s ce10.chrX               2280534 760 + 17718866  
s caeRem4.Crem_Contig233    22049 478 -   113162  
i caeRem4.Crem_Contig233 C 0 I 148
s caePb3.Scfld02_0        3037713 489 -  4147112  
i caePb3.Scfld02_0       I 6 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      49852 557 -   128984 I

a score=-839.000000
s ce10.chrX               2281294 181 + 17718866 GATGAAAGAAAATAG------AATTCGCT--CAATGTCACGTTTTCGAGATTTTTTTCAAATTATAATACTCAACAATTTGAGAATTTGAGCTAACAGCTATTTACCAAAATCTGC--GGTAAAGATAGA------CTTTTCTTGTTTTTTGATGCAAGTATGCA---------------------------------AAGAATTC------------TCCAGTTATTCTT-----------------AACTTCGAA------TA
s caePb3.Scfld02_0        3038202 250 -  4147112 -ACGGAAGAActcaagtttttgattttttgataaaatcacGTTCTcgata-------aaaataacaaaagcTAACACTTTG-------GATATAACTactattttccaaaacataCTAAGGAAaaccagaatattttttgtcttttcttttaatgaaaaactgaacattctAGATCAGTACAATTCTAGACAAGGCTGAAAAATTCAGGAGGCCCCATTTCTGTTCTACGTCATAGTGAGTGTTCATAAACTTTGACAAAAGTTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      49852 557 -   128984 I
e caeRem4.Crem_Contig233    22527 148 -   113162 I

a score=904.000000
s ce10.chrX               2281475 5 + 17718866 ATTGA
s caeRem4.Crem_Contig233    22675 5 -   113162 ATTgg
i caeRem4.Crem_Contig233 I 148 C 0
s caePb3.Scfld02_0        3038452 5 -  4147112 ACTGA
i caePb3.Scfld02_0       C 0 I 4
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      49852 557 -   128984 I

a score=60646.000000
s ce10.chrX               2281480 406 + 17718866 -----AAGAATA-AATAATAGAATATCAATGTTAAACTCAATGATGCTTGAGAAAGTG-------------------CTATTTTTTCTGCA---AAAAAAATGTGTAGAAAATAGAAA--ATAAAATT-CCCGGTACGCTGGAAAAGGCTCACATAAGGTCACGACAACTATTTGAAATGAGAAAC-TGAGACGAGGGAGT--CGGT-AGGATTAAACAAAATATAATTGGTTTCTAGATTGATGAAAATAGCAATCGCACAAGAAGGTTGTCA-----TCAGCTTCATTACCAAAGCGTAGAA--------ATAGGATTAGAGAACAAAGGTTTTTTCTTTCA-----------AATTAAAATGCAATGTAGTACGCACAGA---------GTATCTTCTTGAGGGTGGCAATACATA---GAACGTTATTATTAGGTA---------TGATTTCGTATC-------------TGATCTCA---------CTATTTATTATTTATAG
s caeRem4.Crem_Contig233    22680 464 -   113162 gagagagaaatagaacaataaaatatcaataaGAAATGCACCGATGCCTGACAAAATGTCTTTATTCTCCGTTTCTCTTACATCCTctgca---aaaaaac---acaaacgtTAA-----ATAGAATTGACCGGTCTGT---GCCGAGCTCACTTGAGGTCACGACAACTATTGGAAATGAGAAAC-GATGCGGAGGGTGTAGCGGTAGGGATTAGGATGGAAATAATTggttttca----gatggaaatagaaatag---gaaaaaacgGGTG-----ACATATTCATTACAAATGTGCTGGAAGAAGCTGATAGGATTTGAGAAcaaagaattttttctttgtg-tGGTACaaaatggaaacaagaaaatgaaagggaggaaaatagtgaaaacggtg-aaaaaatGGCATCATGACTATAAATACAATTCTGAGGTTATTTGTA--TCATCACGAATTCCGATC-------AGcttttgaaa------tcttgaaatattcatag
i caeRem4.Crem_Contig233 C 0 I 20
s caeSp111.Scaffold576      50409 401 -   128984 -----AAGAGTAGAACAATAAAATATCAATAAGAAACGCAGCGATGCTTGACAAAACG-tcccattct---------tttttccctttgcAAGGAAAAAAC--CGCAAAcgttaaa----aaagaattgaccGGTGCGC---AAGAAGCTCACTTGAGGTCACGACAACtattggaaatgagaaaa-aagatggaggGTGT--TGGT-GGGATTAAACTGGAAATAATTGGTTTcc-----gatgaaaatag-----------aaaaataggct-----tGAGGTTCATTACGAATGCGTTGGA----------AGGATTTGAGAACAAAGAATT-TGCAATTG---TGGTTGTAAATTGAAacaagaggaagaaaaaaacga------------------agagggTGGCATC--AAC---GAAGTCAGTATCACGGCA---------ACGTCACAGatta------------tgattttcaaaaactcatcaTGAATTATTTATAG
i caeSp111.Scaffold576   I 557 I 205
s caePb3.Scfld02_0        3038461 454 -  4147112 -----ATAAGTAGAACAATAAAATATCAATAAGAAACGCAACGATGCTTGACAAAATGcttccattctc-----ttctttttacttctgca---aaaaaac--gGCAAACGTTAAAAAGGAAGGAATTGACCGGTGCGC---AAGAAGCTCACTTGAGGTCACGACAACTAttggaaatgtgaaaataaaaaggagGGTGT--TGGT-GGGATTAAACTGGAAATAATTGGTTTCCC---Tgatggaaataga---------aaaaaatagggttGCGCTGAGGTTCATTACAAATGCGATGAA----------AGGATTTAAGAACAAAGAATTCTGCATTCAAGCTAGCTGGAAAttaaaatgagaagaagaaaaaaaaga-----ttggaaacGGTCTTGAGGGTGGCATTGAGAG---GAAGGGAGGATTGGAGCATCGAGTACTACGTCACTGATTctgtttctgattttgattccaataaac---ttttgaattatttatag
i caePb3.Scfld02_0       I 4 I 7
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I

a score=6125.000000
s ce10.chrX               2281886 58 + 17718866 --------------ATTTAGATGATCATCAACCAAAAAAATACGTTTTGAGTTCATGGATTTTTGAACTCGA
s caeRem4.Crem_Contig233    23164 56 -   113162 --------------TTTTAAACGACCATAAACCAAAAAG--ACCAGTTGAGCTCACAGATTTTTAATCCgga
i caeRem4.Crem_Contig233 I 20 C 0
s caePb3.Scfld02_0        3038922 70 -  4147112 ggaaattatactttttttaaaCGATCATGAACCAATGAG--ACCTCTAAAGTTCAGAGAGCTTTAATCCGGA
i caePb3.Scfld02_0       I 7 I 129
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      50810 205 -   128984 I

a score=310.000000
s ce10.chrX               2281944 39 + 17718866 CACGAATTT-TATCTTGATTTTTAATTCATACAAGTCTAG
s caeRem4.Crem_Contig233    23220 36 -   113162 gatattttcattttttgagttttatgtCAT----GTCTAG
i caeRem4.Crem_Contig233 C 0 I 107
e caePb3.Scfld02_0        3038992 129 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      50810 205 -   128984 I

a score=0.000000
s ce10.chrX               2281983 887 + 17718866  
e caePb3.Scfld02_0        3038992 129 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      50810 205 -   128984 I
e caeRem4.Crem_Contig233    23256 107 -   113162 I

a score=856.000000
s ce10.chrX               2282870 21 + 17718866 AATTATACTTTATCACGTCTT
s caePb3.Scfld02_0        3039121 21 -  4147112 AATTACACTTTCTAAAATATT
i caePb3.Scfld02_0       I 129 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeSp111.Scaffold576      50810 205 -   128984 I
e caeRem4.Crem_Contig233    23256 107 -   113162 I

a score=100.000000
s ce10.chrX               2282891 3 + 17718866 TCT
s caeSp111.Scaffold576      51015 3 -   128984 TCT
i caeSp111.Scaffold576   I 205 C 0
s caePb3.Scfld02_0        3039142 1 -  4147112 --C
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I
e caeRem4.Crem_Contig233    23256 107 -   113162 I

a score=848.000000
s ce10.chrX               2282894 16 + 17718866 GATGAATCAAGTCAAG----
s caeRem4.Crem_Contig233    23363 18 -   113162 gatgAATCA--Ctaactaga
i caeRem4.Crem_Contig233 I 107 I 2
s caeSp111.Scaffold576      51018 15 -   128984 GATGAATCA--TCCACA---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3039143 15 -  4147112 AATGAATCA--TGCACa---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17013205 3021 - 21540570 I

a score=29289.000000
s ce10.chrX               2282910 118 + 17718866 --AAAAAA---GAGACAGGGACCTTTCGTCTACGCCGAGGCTGGATCTCTTCGT----GCTTC-TCTCTTTTCAAACTCTCGGAAAATTAGCTTGATTGGGTTCAAATTGAGTGTGCGTGATAAAACT
s cb4.chrX               17016226 123 - 21540570 aaaaaaaagaaaaaactacg-----CAGACTGCTCCAAGTTTCTGCCTTTTCCTCATGCCCTCATCGGCTCTTCAACGCGGTCAAAATTAGCTTGATTAGGTTAAAATCGAGTGTGCGTGATAAACCG
i cb4.chrX               I 3021 I 77
s caeRem4.Crem_Contig233    23383 113 -   113162 aaaagaaatgtagaATGAAG-----TCGTCTGCTCCTTGTTTCggtttcctcct----------tttttttcccaaCTCCTCTGAAATTAGCTTGATTAGGTTCAAATTGAGTGTACGTGATAATACG
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      51033 113 -   128984 --AAAAAGGATGAAGCAGAG-----CTGTCTACGC---CTCTAggacttttttc--tctcctc-cttcttc-ctcaAACTCCATAAATTAGTTTGATTAAGTACAAATTGAGGATGCGTGATAATAC-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3039158 115 -  4147112 --aaaaaa---GAGCCGGGG-----TTGTCTACGCGGAATTTCGGACCCATCCA--TGTCCTC-CTTCCTCTCCTACTCTTCATAAATTAGCTTGATTAGGTTCAACTTGAGTGTGCGTGATAATACG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I

a score=2567.000000
s ce10.chrX               2283028 9 + 17718866 TTGGCACCC
s caeRem4.Crem_Contig233    23496 9 -   113162 ATGGCACAC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      51146 6 -   128984 ---GCACCC
i caeSp111.Scaffold576   C 0 I 723
s caePb3.Scfld02_0        3039273 9 -  4147112 ATAGCACAC
i caePb3.Scfld02_0       C 0 I 2
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016349 77 - 21540570 I

a score=2572.000000
s ce10.chrX               2283037 30 + 17718866 CCACACACTTCC-TGAAAATTCAATTAATTT
s caeRem4.Crem_Contig233    23505 28 -   113162 CCTCATACTACTCGGAAGATTCGATTCA---
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3039284 30 -  4147112 CCTCACACTTCG-AGAAGATCCAATtcattc
i caePb3.Scfld02_0       I 2 I 54
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016349 77 - 21540570 I
e caeSp111.Scaffold576      51152 723 -   128984 I

a score=-297.000000
s ce10.chrX               2283067 23 + 17718866 TTCTTTGTTC------AAAGGTGTTACTT
s caeRem4.Crem_Contig233    23533 29 -   113162 TTCattatccgaaaaaaaaagtggataaA
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3039314 54 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016349 77 - 21540570 I
e caeSp111.Scaffold576      51152 723 -   128984 I

a score=-2102.000000
s ce10.chrX               2283090 22 + 17718866 GTTCGGG--------------------------TTGGG-ATAACGTGCC
s cb4.chrX               17016426 41 - 21540570 GTTCGGGGGATGTG--------GCACTTCATGCTTGAGGACGAGGCTCC
i cb4.chrX               I 77 C 0
s caeRem4.Crem_Contig233    23562 38 -   113162 GTTTGGGAGTCAAGGGTGGAGAGCACGTCAT-CTTGAG----------T
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3039314 54 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e caeSp111.Scaffold576      51152 723 -   128984 I

a score=29902.000000
s ce10.chrX               2283112 195 + 17718866 TGGCAACATTGATATTTGAGAGAATAATAAATGT------TAAGTTCAGGGGTCAATGATCG-GTCAAGTGAAG-----GCGTTAATGAAAACTAGGAAAACTAGGCTTTTTCCCCATTGAAGAATAC---------ATTGAA-AATTGTAAATGTCACGCG---TCG--AGACATGCCAAAC---GGGAAAGGAAAAGATGAGGTCAAGAAGTGTTTTGTCTTT
s cb4.chrX               17016467 183 - 21540570 GGCCAACAATGATATTTCGAAGAAGAATGAAGGTTAGCCATTGG--AGGGAGGCAATGATCGTGAGAGGCGAAAAATGTGCGCTAATGAAAA---------------------CTC-----GGAATATATATGAAAAGTTGAACAATTGTAAATGTCACATGTCAATG--GAGGAGGTTAAGCTCCGTGaaaaaaa------------GACGGCCTTTTGTCTTT
i cb4.chrX               C 0 I 1532
s caeRem4.Crem_Contig233    23600 183 -   113162 TGACAACAATGAtatttagaagaagaagaaaaatgaatgttagGTTCAGGGGTCAATGATCGCGCCAAGCCAAAAG---GCGCTAATGAAAA---------------------CGCTTTGAGGAATat---------gtggaaaaattgaaaatgtcacAAG---ACG--CAACATGTCAAACATTGAGACGACGA----TGGAGTTGGATAttgttttgtcttt
i caeRem4.Crem_Contig233 C 0 I 297
s caePb3.Scfld02_0        3039368 190 -  4147112 TGGCAACAATGatatttcaaagaagaatgaaggt------TGAGCTCAGGGGTCAATGATCGTGCCAACGTGAAAA---GCGCTAATGAAAACTAGGCAA------------TCGCTTTGAAGAATAT---------GTGGAAAAATTGTAAATGTCACAAG---ACGAAGAGCATGTCAAACATTGAGAAATGGA--GATGAGCTTGGCAACTGTTTTGTCTTT
i caePb3.Scfld02_0       I 54 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e caeSp111.Scaffold576      51152 723 -   128984 I

a score=-1848.000000
s ce10.chrX               2283307 243 + 17718866 AAGGGTATCAATTTTTTCTTATTCGCATGTTTGGTGATAAAACAAAGAGCGCTTAGAACCAGAATTCAAACTAGTTGCAAAAAAATCTTCAATGTCCATTTTCGTACAGTTTTCTCAATTGTTTTTGTAAAGCTTGAAAAAATAAAGTACATACATAGCAGTGGCAGGcgacaaacggcaaattggcag-----cttgccgaaaatgaaaatttccggcaa------------atcag--------------caaaccgggaactagagaatta
s caePb3.Scfld02_0        3039558 177 -  4147112 ------------------TTAT-------------------------AGCGTTTAA---------TCAAATTCATT---------------------ATTGTCGGA--------TGAGTAGTTCTtgtgaaaattgtgaatataTA------ACATTTTAGTGTTCGA----AAACTGCAGTTATGAAGAGTTATTTgcccaaaaa------ttccagcaaGGATGAGTTGCaatcaaatttgttttaatatcaaaccaaaataaagagaaaaa
i caePb3.Scfld02_0       C 0 I 132
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016650 1532 - 21540570 I
e caeSp111.Scaffold576      51152 723 -   128984 I
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=0.000000
s ce10.chrX               2283550 142 + 17718866 gccgatttgtcaaatttaccggtaaaccagattgcctagaattttcggcaaaTTGTGAAATCTACACAATTGCTACAGGACCTCCCTTTATGAGGGGTCTAAAAAATGCCTGAATTTTTTCATAAGAAATAGTGATTGGTAT
e caePb3.Scfld02_0        3039735 132 -  4147112 I
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016650 1532 - 21540570 I
e caeSp111.Scaffold576      51152 723 -   128984 I
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=-1836.000000
s ce10.chrX               2283692 295 + 17718866 CGAATTCAGCATACCATAAAAAAACAAAAATTAGAAGCCAAAAATTGAAAAATCGACAGCAAAATTGtatattaatttagtttaattttat-----------ttttcaaaaatttGACCCTTTCCGAAACAATGGGAATTTCTGGTAAATATTTCGAAAACCTCAATTTTTTGCTATTTTTCTGGCAATTTTTGAGAACCCGGAATAATTAAAATTTAAACAAAGAGTCTTGGCAGGCTGAATCAGATCGAATATTAATTTTTCATGAAACAGGTCAGAAATGTCTTGGCTCCTCAAAACGTGATT
s caePb3.Scfld02_0        3039867 226 -  4147112 CAAAACGAACATACCA------AATGCGGATT-GTAGTTTAAGGTAGCAAAATTCG-AGCAAGGAT-------AGTTTAGCGTACTTCTAGAAGTTCCTTGATGTTCAGTCGTTCTAACGTTTGCGGATTGATGCAA------Ggtacat------------tcaatttttttt---------------------aaaccccAGAcgcgaaaaattgaagaata------tgacaagaaaaaacata----aaactaaGTTTCCTTTGCA--------AAATATATTCATTC----AAATGt----
i caePb3.Scfld02_0       I 132 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016650 1532 - 21540570 I
e caeSp111.Scaffold576      51152 723 -   128984 I
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=484.000000
s ce10.chrX               2283987  98 + 17718866 TTCAAACAAAATCAATTTATTCTCTGGAAATTTACAATTTTACACAACTGAACTATTAAT----------GAGC----------ATTCAAAAAAAACCTGCAGCTTACTACATCCCA-A
s caeSp111.Scaffold576      51875 103 -   128984 tttgaaaaatatttacttCTTTTC----AGTGTACAATTGTtcaca----aaatattgaaagcTAC----AAGCTTAAAACCAGACCCTAACAA---CTATTGCACactatttctga-a
i caeSp111.Scaffold576   I 723 C 0
s caePb3.Scfld02_0        3040093  91 -  4147112 ------acagatttcattttttt-----------------ttcac-----aaatattgAAAGCAATGACAGAGCTTAAAACCATACCCTAAAAAGCTATATTGCACACTATTCCCCAGA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e cb4.chrX               17016650 1532 - 21540570 I
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=2811.000000
s ce10.chrX               2284085 30 + 17718866 CACACAAATTGGCAAAAAAAAAACAAATGC
s cb4.chrX               17018182 29 - 21540570 CACAC-AACTTGTCGAAAGAAAACAAAGGC
i cb4.chrX               I 1532 C 0
s caeSp111.Scaffold576      51978 20 -   128984 ------aacagttggcaagaaaaaa----t
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3040184 24 -  4147112 ------AACAGatggcaagaaaaaaaaagc
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     20156 7827 +   720316 I
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=-4661.000000
s ce10.chrX               2284115 28 + 17718866 AAGACTAAAATCGAAATGTTTCATTGTT
s cb4.chrX               17018211 27 - 21540570 A-AGAAGAATATACAATTAAGCTGCCAC
i cb4.chrX               C 0 I 1
s caeSp111.Scaffold576      51998 27 -   128984 acagttgAGCTCA-AACGAGACACCCAA
i caeSp111.Scaffold576   C 0 I 24
s caePb3.Scfld02_0        3040208 28 -  4147112 acagTTGAGCACACAACTGGTCACCCAG
i caePb3.Scfld02_0       C 0 I 23
s caeJap4.Scaffold18213     27983 28 +   720316 AATACCCaggttgcaattttttattatt
i caeJap4.Scaffold18213  I 7827 C 0
e caeRem4.Crem_Contig233    23783 297 -   113162 I

a score=178490.000000
s ce10.chrX               2284143 257 + 17718866 TTCAATTCTCGTTGATCCTCGCAGGGGGCGGTCTTGAGACATCCCGTCGATGAATCTCTCGGTTCAAAACATTTCGCTTCTTCTCATATCT--A-------AAATA-TATCTGATGATTGATGTTTTCAAAAAAAAAGATGATCACAAGATTTTTTTGTTTGAGCTA------CTTACTTTTTCACAATATCGAACACTTCTTGTTTGTAAAGCTTCATCATCAGGTGTTCGTATTCCGTCAGCTGCTCGAAATTGAACAAATCCCACTGAAA
s cb4.chrX               17018239 225 - 21540570 --TAATTTTCGTCGATTcttggtggtggtggtctCGAGACGTCTCGTCGATGAATTTCTCGATTCAAAacatttcgctttttttcgtatct-ga-------aaata-acattttGCGT-----------------------TT--------GTATTCCCCATCGCTC------CTCACTTTTTGACAATATCGAACACTTCCTGTTTGTAAAGCTTCATCATCAAATGCTCGTACTCCGTCAGCTGCTCGAAATTGAACAGATCCCACTGCAA
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    24080 237 -   113162 TTCAATTCTCATTTATTCTCGGTGGAGGCGGTCTTGAGACGTCCCGTCGATGAATTTCTCGGTTCAAAACATTTCGCTTCTtttcatatct-ga-------aaaca-tcAGTGATCAT-----------------------ATCACAA---GTTTTTCTCGTCCCCTATCC-ACTCACTTTTTGACAATATCGAACACTTCCTGTTTGTAAAGCTTCATCATAAGATGCTCGTACTCCGTCAGTTGCTCGAAATTGAAGAGATCCCACTGcaa
i caeRem4.Crem_Contig233 I 297 I 42
s caeSp111.Scaffold576      52049 238 -   128984 ATTAATTTTCGTTGATTCTTGGCGGAGGCGGTCTTGAGACGTCCCGTCGGTGAATTTCTCGATTCAAAACAttccgtttcttttcatatCTGGA-------AAAAGCTCATTGATCAT-------------------AACAATCATAAGACGTC-----ACTCCCTGGCT---CTTACTTTTTGACAATATCGAACACTTCCTGTTTGTAAAGCTTCATCATCAAATGCTCGTACTCCGTCAGTTGttcaaaattgaagagaTCCCACtgca-
i caeSp111.Scaffold576   I 24 C 0
s caePb3.Scfld02_0        3040259 238 -  4147112 ttcaattctcgTTGATTCTCGCTGGAGGCGGTCTTGAGACGTCCCGTCGGTGAATTTCTCGATTCAAAACATTCCGCTTCTTTTCATATCT-TA-------AAATGCTCATGGATCAT-----------------------ATCACGAGGTGTCTATCTAACCCCTCAAA---CTTACTTTTTGACAATGTCGAACACTTCCTGCTTGTAAAGCTTCATCATCAAATGCTCGTACTCCGTCAGTTGTTCGAAATTGAAGAGATCCCACTGCA-
i caePb3.Scfld02_0       I 23 C 0
s caeJap4.Scaffold18213     28011 235 +   720316 ---------------ttctcgCAGGAGGTGGTCGCGAAACATCTCTTCGATGAATTTCCCTGTTCAAAATGTTCCGTTTTCTTTCGTACCT-GAAATATATAAATA-CATCTCTTCGT---TATTTTTAGATGAGATAACAAT--------GTT----------CTAAGACAACTCACTTCTTGACAATATCAAAGACTTCCTGTTTGTAAAGCTTCATCATCAAGTGTTCATACTCCGTCAGCTGCTCGTAATTGAAAAGATCCCACTGaaa
i caeJap4.Scaffold18213  C 0 C 0

a score=-8899.000000
s ce10.chrX               2284400 47 + 17718866 --------------------ATCGAT-TTTTCAGCAAAAAAAATTATTTCTGGCTCTC--GCAAAAAAAA
s cb4.chrX               17018464 35 - 21540570 ---------------------Tgcat-tttttatt-------attgtttTTATATCTCTTGTCA------
i cb4.chrX               C 0 I 14
s caeSp111.Scaffold576      52287 35 -   128984 --------------------atcatt-tttttatt-------tttgtttttattcccC--TTCA-----A
i caeSp111.Scaffold576   C 0 I 7
s caePb3.Scfld02_0        3040497 35 -  4147112 --------------------Ataattctttttatt-------tttgtttttataccCC--GTAA------
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     28246 46 +   720316 ataaagtcgaataaaataaaataaaa-tccagACC-------GTCA----TATGACAC------------
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    24317 42 -   113162 I

a score=169073.000000
s ce10.chrX               2284447 239 + 17718866 ATACCTCTAACAGGTGGTCCAGCGACGAATCCGATTGAGCATACATCAGTAGCCAGGGTGGCAGTTCTTTCTCCTCTATAATGTGCAGATTGGCATTCAAATCCACTTGGGAGCGGCTAGCAACATTTACAGATTCCGTTCGAAAAATTGGATTTGATATACCAGGGTGCTCGTATTGTGTTCTCTTCATTTCTTCACTGAAACAAACATTGTTTTTC-----------------------------------------TTTCGCTATAATAAAAAGCTT---------------------------------------------------------------
s cb4.chrX               17018513 237 - 21540570 ATACCTCCAGCAGGTGGTCCAGAGAGGAGTCTGATTGAGCGTACATCAGTAGCCAGGGTGGAAGTTCTTTCTCTTCGATGATGTGAAGGTTCGCATTAAGATCCACTTGAGAACGGCTAGCGACATTTACAGATTCGGTTCGGAAGATTGGATTGGAAATTCCAGGATGCTCATATTGGGTTCTCTTCATCTCTTCGCTGGAAAATGTTGAAGTCTAA-------------------------------------------GGAAatgatttgaagaaaa---------------------------------------------------------------
i cb4.chrX               I 14 I 3
s caeRem4.Crem_Contig233    24359 229 -   113162 ATACCTCTAGCAGGTGGTCCAGAGATGAATCCGATTGAGCATACATCAGTAACCAAGGTGGGAGCTCCTTTTCTTCGATGATATGAAGATTTGCATTCAAGTCAACAGTTGATCGGCTGGCCACATTTACAGATTCCGTTCGGAAGATTGGGTTCGAGATCCCAGGATGTTCATATTGTGTTCTTTTCATCTCTTCACTGtaacatttccttttt---------------------------------------------------tgttttgaaaacag---------------------------------------------------------------
i caeRem4.Crem_Contig233 I 42 I 9
s caeSp111.Scaffold576      52329 225 -   128984 ATACCTCTAGCAGGTGGTCTAAAGATGAGTCCGATTGAGCATACATCAGCAACCAGGGTGgaagctctttttcttctatgaTATGAAGGTTCGCATTGAGATCAACTTGTGAGCGACTTGCGACGTTCACTGATTCTGTTCGGAAGATCGGATTTGAAATTCCTGGATGTTCGTATTGAGttcgtttcatttcttcactGAAACCACTTTTATGATGA-------------------------------------------------------AGAGCTA---------------------------------------------------------------
i caeSp111.Scaffold576   I 7 I 15
s caePb3.Scfld02_0        3040538 237 -  4147112 ATACCTCTAGCAGGTGGTCTAAGGATGAGTCCGATTGAGCATACATCAAGAGCCATGGTGGTAGCTCTTTCTCTTCAATAATATGTAAATTGGCATTAAGGTCGACTTGAGAACGACTAGCAACATTGACAGATTCAGTTCTGAAGATCGGGTTTGATATTCCCGGATGCTCATATTGGGTCCTCTTCATCTCTTCGCTGTAAGCAATATTTCAATGA-------------------------------------------TCGAATTAAGTTAGAACAA---------------------------------------------------------------
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213     28292 343 +   720316 GTACCTCGAGTAGGTGGTCTAGAGAAGAATCTGATTGGGCGTACATCAACAACCACGGTGGAAGTTCTTTTTCTTCAATGATATGCAGATTTGCATTGAGATCGACTGTTGAGCGACTTGCAACATTTACAGATTCAGTTCGGAAAATTGGATTGGAAATTCCAGGATGTTCATATTGGGTCCTCTTCATCTCCTCGCTGAAACGGTTTCCAATTTAAGGACGAAAATTTTACGTCAAAgtttatttaatttatttcgTTTTCGGAAAAACTAAAACCTGATCTATGTctttgtatactcggtataaaacgctgataactcgctccaaacgaacaaaaaattt
i caeJap4.Scaffold18213  C 0 C 0

a score=-1300.000000
s ce10.chrX               2284686  4 + 17718866 ----------------------------------------------------GTTC
s caeJap4.Scaffold18213     28635 56 +   720316 cacatgcatttggaatgaggtttagagaaatcagagcaaaatatcggccacggctc
i caeJap4.Scaffold18213  C 0 I 130
e caePb3.Scfld02_0        3040775  0 -  4147112 C
e cb4.chrX               17018750  3 - 21540570 I
e caeSp111.Scaffold576      52554 15 -   128984 I
e caeRem4.Crem_Contig233    24588  9 -   113162 I

a score=251630.000000
s ce10.chrX               2284690 336 + 17718866 ACTCACTGATAGTAAAAAACTCCCTTCTCCGGATCGAAAAACTTCTTCCATCCAGGCTTGAGACTTTCATGAACAAAAGGATGAACCCAATGAGTTCGCCGGTTGGCATGATCAACGTAGTATGGCTGGTTTTCTGTGGTGAATTCTACAGCCCAGTTTTCCGGCAGTGGAA---TATCACTTGAACAGTCTAAAAACATAATTTCCAAGCA--------------GTTCTTTAACAC-------------CAGAAA-------CTTACCACAAGAAGATCGATATTGTTGAATTGTCATCAAATGTTCACTGGGAAGAGTTTGAAGCGATTGGAATCTTGGCGGTTGAGGGGAAGCCAGCCTTTTTTCACTG
s cb4.chrX               17018753 342 - 21540570 -ctCACTTGTAATAGAACACTCCCTTCTGTGGATCAAAAATCTTCTTCCATCCTGGCTTCAGACTCTCATGGACCAGTGGGTGAACCCAATGAGTTCGCCGATTGGTATGGTCCACGTAGTATGGCTGGTTTTCAGTAGTATACTCGACAGCCCAGTTTTCTGGGAGCGGCAGGTGGTCACTTGAGCAatctgaatgaaaa-ttttcgagaa-------------------ttaaaaaatatatat--gagGAAAAG-------CTTACCACATGACGAGCGATACTGCTGGATTGTCATTAACTGTTCGCTGGGAAGCGTTTGAAGAGATTGGAACCTTGGAGGTTGGGAGGATGTTAGTCCCTTCTcgct-
i cb4.chrX               I 3 I 1
s caeRem4.Crem_Contig233    24597 340 -   113162 GCTTACTTATAGTAGAAAACACCCTTCTGCggatcaaaaatctttttccaTCCAGGTTTCAGACTCTCATGAACCAACGGATGCACCCAATGAGTTCTTCGGTTCGCATGATCCACGTAATATGGCTGGTTCTCTGTTGTGAATTCAACCGCCCAGTTCTCCGGTAGTGGTA---GATCACTTGtacaatctgaaacaaaa-t----gggaa--------------aatagttgaaaa-----------aggagaagaatggTACATACCACAAGAAGATCGGTACTGTTGAATTGTCATCAAATGTTCACTTGGCAGTGTTTGAAGAGATTGAAATCTTGGGGGCTGTGGAGATGTGAGCCCTTTTTCACTG
i caeRem4.Crem_Contig233 I 9 I 7
s caeSp111.Scaffold576      52569 338 -   128984 ACTCACTTATAATAAAATACACCTTTCTGAggatcaaaaaacttcttccAACCGGGTTTGAGACTCTCATGTACCAGTGGATGTACCCAATGAGTTCTTCGATTTGAATGATCAACGAAATATGGTTGATTTTCTGTTGTGAACTCTACAGCCCAGTTCTCCGGAAGAGGAA---GATCACTCGTACAATCTGAACTTGTT-CTTTCATAAA--------------TAGAGTagcaacttcaa----------aaaa-------cttaccACATGAAGAACGATATTGTTGAATTGCCATCAAATGTTCGCTTGGAAGAGTTTGAAGAGACTGGAATCTTGGTGGTTGAGGTGATGCCAGTCttttttcgctg
i caeSp111.Scaffold576   I 15 C 0
s caePb3.Scfld02_0        3040775 344 -  4147112 ACTTACTTGTAGTAGAAAACTCCCTTCTGTGGATCAAAGATCTTTTTCCATCCTGGTTTCAAACTTTCATGAACTAGAGGATGTACCCAGTGAGTTCTTCGATTTGCATGATCCACATAGTACGGCTGGTTTTCAGTCGTGAATTCGACAGCCCAATTTTCAGGGAGAGGGA---GATCACTTGTacagtctgaaaatgttaCAATTGAAAA--------------GAGAACTGAAATACTGAT-----AAATCAAA-------CTAACCGCACGACGAACGATACTGTTGAATTGTCATCAGATGTTCACTTGGCAGTGTTTGAAGAGATTGAAATCTTGGGGGTTGCGGAGAGGTTAGTCCtttctcactg
i caePb3.Scfld02_0       C 0 I 11
s caeJap4.Scaffold18213     28821 357 +   720316 ACTTACTTGTAATAGAAAACACCCTTTTGTGGGTCGTAAATCTTCTTCCACCCAGGCTTCAAACTCTCATGCACCAATGGATGTACCCAATGTGTTCTTCGGTTTGAGTGATCTACATAATATCGCTGATTTTCAGTGGTATACTCAATTGCCCAGTTTTCCGGTAGAGGAA---GGTCACTTGAGCCATCCGAac------tttctggaaaacaaaGATAAATAGGAGAATGAAATCGTAGAGGTTCTAAAAACCA-------CTAACCACAAGAATTACGATATTGTTGAATGGTCATGAGATGTTCACTTGGAAGGGTTTGCAGAGATTGGAACCTTGGAGGTTGCGGTGAAACAAGGCCCTTCTCACTG
i caeJap4.Scaffold18213  I 130 C 0

a score=2730.000000
s ce10.chrX               2285026 3 + 17718866 AAA
s cb4.chrX               17019096 3 - 21540570 aaa
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    24944 3 -   113162 aaa
i caeRem4.Crem_Contig233 I 7 C 0
s caeSp111.Scaffold576      52907 3 -   128984 aaa
i caeSp111.Scaffold576   C 0 C 0
s caeJap4.Scaffold18213     29178 3 +   720316 AAA
i caeJap4.Scaffold18213  C 0 I 41
e caePb3.Scfld02_0        3041119 11 -  4147112 I

a score=-2075.000000
s ce10.chrX               2285029 20 + 17718866 ATACTA----TATATAAATGCAGA
s cb4.chrX               17019099 15 - 21540570 attttgaaggcatat---------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    24947 13 -   113162 gttctaaa--taaat---------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      52910 22 -   128984 ataataat--tatatAACAGCAAA
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3041119 11 -  4147112 I
e caeJap4.Scaffold18213     29181 41 +   720316 I

a score=-3451.000000
s ce10.chrX               2285049 60 + 17718866 CTAATTTTCCTTCAAGGGCGAATCTTTTTCtttttatttttaattagttttttatttaat
s cb4.chrX               17019114 46 - 21540570 ----ttatttttgaaacgcGAG----------TTTACCGTCTATTAGCTATCTGACTAGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    24960  2 -   113162 ----tt------------------------------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3041119 11 -  4147112 I
e caeJap4.Scaffold18213     29181 41 +   720316 I
e caeSp111.Scaffold576      52932  0 -   128984 C

a score=-2006.000000
s ce10.chrX               2285109 157 + 17718866 tatacttttgaaattatgaaaaatataataCTCTTCAAACTTTTCATTAAAAAATTTGAAAAATTTTTCAATATTTGTTAAATCCGGAACAATTGAAAAAATACCTTTTTTTAAATTGTTTTATGGTACTTTAAAAATTTCAAAAAATAAAAAGATG
s caeRem4.Crem_Contig233    24962  69 -   113162 ----------aaaataaacaaaatgtCACATGCCTTAATTGTGACGTCATA-------------TTTTCAAC-----TCaa------------------------------tgaattgtt---------tttaaga---------------------
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3041119  11 -  4147112 I
e caeJap4.Scaffold18213     29181  41 +   720316 I
e cb4.chrX               17019160   0 - 21540570 C
e caeSp111.Scaffold576      52932   0 -   128984 C

a score=-5029.000000
s ce10.chrX               2285266 107 + 17718866 ATATGTTTACCTTAAATTCTAAAATATGAGATAAAAAACAAATTTTTTTAGTTTCCGATCAACGAAGAAAACTAAACGTAAAATAAATTACCAAAATCGCAAAAGCA
s cb4.chrX               17019160  44 - 21540570 ---------------------------------------GCACGTTCACATGCTTC----------------------TAACATAATCGACTCAAATTACAAAAG--
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    25031  61 -   113162 -----tttATTTTA----CTACAAT-------------TAGGGGTTTGTAGTCTAT----------------------CAACTTTAATAATCGGAATAATAATAT--
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3041119  11 -  4147112 I
e caeJap4.Scaffold18213     29181  41 +   720316 I
e caeSp111.Scaffold576      52932   0 -   128984 C

a score=0.000000
s ce10.chrX               2285373 11 + 17718866 AAAAAAAAGTC
e caePb3.Scfld02_0        3041119 11 -  4147112 I
e caeJap4.Scaffold18213     29181 41 +   720316 I
e cb4.chrX               17019204  0 - 21540570 C
e caeSp111.Scaffold576      52932  0 -   128984 C
e caeRem4.Crem_Contig233    25092  0 -   113162 C

a score=-1679.000000
s ce10.chrX               2285384 33 + 17718866 TCATT--ACGAATTTCGTTAACAAATTTTTAAAGC
s caeSp111.Scaffold576      52932 11 -   128984 TAATC--ATGAAT----------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3041130 27 -  4147112 tgatcaGATAAAT-TCAGTAGCAATATT-------
i caePb3.Scfld02_0       I 11 C 0
e caeJap4.Scaffold18213     29181 41 +   720316 I
e cb4.chrX               17019204  0 - 21540570 C
e caeRem4.Crem_Contig233    25092  0 -   113162 C

a score=104645.000000
s ce10.chrX               2285417 120 + 17718866 AAAAAACTTACATCACGCTGAGTTCCCGTGTGCCCTGTTCTACATTACCAATCGAGTGTGAGGCTGTCAGTGACTTCCTTGGAACATACCGCAGTGCTCCTCTACA----AAATATCCAAATTA
s cb4.chrX               17019204 115 - 21540570 -----ACTCACCCGACACTGAGCTCTCGCATGCCTTGTTCCACATTCCCAATCGAGTGCGACGCGGTCAGCGACTTTCTTGGCACGTATCGAAGTGCTCCTCTGAA----AAACGCGTTCATTA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    25092 115 -   113162 -----ACTTACCCAACACTAAGCTCCCGCATTCCTTGTTCTACATTACCAATCGAGTGTGATGCAGTTAGTGATTTTCTTGGCACGTATCGCAGTGCTCCTCTGAA----AAACGCAAACATTA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      52943 114 -   128984 ------CTCACCTTATACTGAGTTCTCTCATTCCTTGCTCTACATTACCAATAGAGTGTGAGGCAGTTAGTGATTTCCTTGGCACGTAACGAAGTGCTCCTCTGAA----AAACGTTCACATTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3041157 119 -  4147112 -AAAAACGTACCCAACGCTAAGTTCCCGCATTCCTTGTTCAACATTTCCAATTGAATGAGAAGCAGTAAGTGACTTTCTTGGCACGTATCGCAATGCTCCTCTGAA----AAACGCGCACATTA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     29222 124 +   720316 aaaaaactcaccccACACTGAGTTCCCTCATTCCCTGTTCCACATTGCCAATGGAATGTGACGCCGTCAGTGACTTTCTCGGCACGTAGCGCAGTGCTCCTCTGAAATATATACGTTCATATTA
i caeJap4.Scaffold18213  I 41 I 135

a score=36820.000000
s ce10.chrX               2285537 254 + 17718866 TCATAAATATTAATAAGATATCACCGTCGTTTCATTGAGAACCGATTAAATTGTACGACACGGCAATCTAAGGTCAA---GTTGA------CGTCCTCCATGGTTCTTGTTTTTGCT-----------TCAAAAAAGAAAAG-------AGTAGGGGGTTTTCAC-------CTTAGTTTTTAATTTAGTAGTTTGAATAACTTTTCCAGCAGAAA-ACTGAATTCCGTTGTGATTTTGAATTTGGAAAACCCGTATTTGAATAAAATTTGC------------ATAACA----------ATATTGCTTCT
s cb4.chrX               17019319 261 - 21540570 TCATAAATATCATTGAGTTATCACCGTCGTTTCATCGAAAACCGATTAAACGGCACGACACGGCAATCTAAAGTCAAGGCGGCGACACTGGCGTCCTCCATGGCTCGTGtgctttcttcttctttaaatAAAAGTAACAACA---------CTGAGTGT-----------------TTTTGAGGGATA---------------TATGTATCAGAAA----gtttttcggggaaaattcGTTTCTCTC-----CGTTTCAGATTGGGGTTTCTGCCATCACgagtttcacaaaaaaaattccgaaaagtaTT
i cb4.chrX               C 0 I 79
s caeRem4.Crem_Contig233    25207 244 -   113162 TCATAAATATCAACAAGTTATCACCGTCGTTTCATGGAAAACCGATTAAACGGTACAACACGGCAATCTAAAGTAAA---GTTGACAGTGGCGTCCTCCATGGTTCTTGttctttct-----------tgaaaatgacaacg---------ttgtaaat-----------------tttttcggtttg---------------tttccagaaaaaacagGGGAATACGAGACAAAAGTGGTAGTCacaagattttttcaga--aggttttttgaatacattgGGATAACA----------CGAAGAGAATT
i caeRem4.Crem_Contig233 C 0 I 18
s caeSp111.Scaffold576      53057 219 -   128984 TCATAAATATTACTGAATTATCACCGTCGCTTCATTGAAAACCGATTAAAAGGTACAACGCGGCAGTCTAGAGTTAA---GTTGACAGTGGCGTCTTCCATgctttttgctctttct-----------tgaatacaaaaaca----------------------------------gtttttggtCTT---------------TTTCAAAAGGCCA--CGcaaatcgaatgaaaa-----------------cagttttgtgTGGAATACGAGCGTGCATTATAACAACA----------TATGAAAATCG
i caeSp111.Scaffold576   C 0 I 11
s caePb3.Scfld02_0        3041276 216 -  4147112 TCATAAATATTAATAAGTTATCACCGTCGTTTCATTGAAAACCGATTAAACGGTACAACACGGCAATCTAAAGTAAA---GTTGACAGTGGCGTCCTCCATGGCTCTTGttccttct-----------tcaaaagaagcaaa----------------------------------ttttttag-------------------tttcagagGCACAGTAAGAAGTCAGAAACACA-----------------CGTTTTTGTATAGAATGCGATTACGCATCAT-GCAACA----------tttcgaatact
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     29481 228 +   720316 tcgtcaACAATATAAATTTATCACCGTCGTTTGATGGAAAACCGATTGAATGGTAC------------------------GGTGG---TAGCCTCATTCATA------GTTTtgtct-----------tcaaaaaatgaaaaacagaataatatgccgttttcgttgaaatgtttgcgttttgttttg---------------ttttggttgttCA---TAAAATTCAGAATAAATTTGCAAACAAAAA---CGTTTATACGCTCGTTTTCCCATCATCTTCATACTACA----------TTT--------
i caeJap4.Scaffold18213  I 135 C 0

a score=-14955.000000
s ce10.chrX               2285791 39 + 17718866 AGTTCT-TTTTAA------AAATTGTCAGTGCT----------TTATAATAACCG-----C
s caeRem4.Crem_Contig233    25469 48 -   113162 --TTCTAGcggag------aattcaaaaatggtaaTATTGGTGTATTTCAAAGAG-----T
i caeRem4.Crem_Contig233 I 18 I 2
s caeSp111.Scaffold576      53287 47 -   128984 AAttctattatattttttcgatcagTGAGTAACA---------TTTTTCTGGCTG-----G
i caeSp111.Scaffold576   I 11 I 5
s caePb3.Scfld02_0        3041498 51 -  4147112 aatattattatAG------GAACCGACAGTAGTAGCAAT----GTTTTCGGAACGTTTATA
i caePb3.Scfld02_0       I 6 I 5
s caeJap4.Scaffold18213     29709 26 +   720316 CATATTTTTGCCA------GTATTCCAAATAC-----------------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17019580 79 - 21540570 I

a score=99814.000000
s ce10.chrX               2285830 103 + 17718866 TTACCTGTTGAAGCTTCTTGAAGAGAGTACGTAGTTGTTTCGTGCTCCAAATGAAGTAGACGGCTCGTCGGATGGCTCCGTGTAGACATCGTTTTCACTGGAA
s cb4.chrX               17019659 103 - 21540570 TTACCTGTTGAAACTTCTCGACGAGAGAACATTATTATTTCGTACTCCGAATGAGGTGGACGGCTCATCCGATGGTTCTGTGTAGAcatcattttcactgaaa
i cb4.chrX               I 79 C 0
s caeRem4.Crem_Contig233    25519 103 -   113162 TTACCGATTGAAACTTCTGGAAGAGAGAACGTTGTTGTTTCGGACACCAAATGAAGTTGACGGCTCTTCTGATGGTTCCGTGTAAACATCGTTTTCGCTGTAA
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      53339 103 -   128984 ATACCTGTTGAAACTTCTCGATGAAAGAACATTATTGTTTCGTACTCCAAAAGATGTCGATGGTTCATCTGATGGCTCCGTGTAGACATCATTTTCACTGAAA
i caeSp111.Scaffold576   I 5 C 0
s caePb3.Scfld02_0        3041554 103 -  4147112 TCACCTGTTGAAACTTCTCGAGGAAAGAACGTTATTGTTTCGTGCTCCAAAAGAGGTTGATGGCTCGTCCGATGGTTCCGTGTAGACATCGTTTTCGCTGTAA
i caePb3.Scfld02_0       I 5 I 328
s caeJap4.Scaffold18213     29735 103 +   720316 AAACCTGTTAAAACTGCGAGATGATAGAACGTTGTTGTTTCGAGCACCAAATGAAGTGGATGGTTCTTCTGAAGGCTCGGTGTACACATCGTTTTCACTGAAA
i caeJap4.Scaffold18213  C 0 I 1502

a score=-2668.000000
s ce10.chrX               2285933 9 + 17718866 AGTGAA--AAC
s cb4.chrX               17019762 9 - 21540570 --caCAGTAAT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    25622 7 -   113162 --TAAA--AAC
i caeRem4.Crem_Contig233 C 0 I 320
s caeSp111.Scaffold576      53442 5 -   128984 -CGAAA-----
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I

a score=-1839.000000
s ce10.chrX               2285942 27 + 17718866 -----------------TCAGATTTAAAATTT-TTATCACAACGG
s cb4.chrX               17019771 36 - 21540570 -------GTGAGTTTGATTGGAACTGA--TTTGTTATCACTACAG
i cb4.chrX               C 0 I 163
s caeSp111.Scaffold576      53447 41 -   128984 TCATGTCTTGAATCCG-TCGTAAGTCAATTTTATTATCAGTT---
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I
e caeRem4.Crem_Contig233    25629 320 -   113162 I

a score=689.000000
s ce10.chrX               2285969 16 + 17718866 GGATTTTTAGTACAAA
s caeSp111.Scaffold576      53488 16 -   128984 gtatttttgagataaa
i caeSp111.Scaffold576   C 0 I 160
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I
e cb4.chrX               17019807 163 - 21540570 I
e caeRem4.Crem_Contig233    25629 320 -   113162 I

a score=0.000000
s ce10.chrX               2285985 763 + 17718866  
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I
e cb4.chrX               17019807 163 - 21540570 I
e caeSp111.Scaffold576      53504 160 -   128984 I
e caeRem4.Crem_Contig233    25629 320 -   113162 I

a score=388.000000
s ce10.chrX               2286748 24 + 17718866 TTTTCAAAAATATTCAAACC------AAAA
s caeRem4.Crem_Contig233    25949 30 -   113162 ttctcaCAACTTTTTAAgcttttaaaagaa
i caeRem4.Crem_Contig233 I 320 C 0
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I
e cb4.chrX               17019807 163 - 21540570 I
e caeSp111.Scaffold576      53504 160 -   128984 I

a score=273.000000
s ce10.chrX               2286772 1 + 17718866 A
s caeRem4.Crem_Contig233    25979 1 -   113162 a
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      53664 1 -   128984 a
i caeSp111.Scaffold576   I 160 C 0
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I
e cb4.chrX               17019807 163 - 21540570 I

a score=180.000000
s ce10.chrX               2286773 1 + 17718866 A
s cb4.chrX               17019970 1 - 21540570 A
i cb4.chrX               I 163 C 0
s caeRem4.Crem_Contig233    25980 1 -   113162 a
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      53665 1 -   128984 G
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3041657 328 -  4147112 I
e caeJap4.Scaffold18213     29838 1502 +   720316 I

a score=143556.000000
s ce10.chrX               2286774 780 + 17718866  
s cb4.chrX               17019971 588 - 21540570  
i cb4.chrX               C 0 I 133
s caeRem4.Crem_Contig233    25981 606 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      53666 595 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3041985 603 -  4147112  
i caePb3.Scfld02_0       I 328 C 0
s caeJap4.Scaffold18213     31340 628 +   720316  
i caeJap4.Scaffold18213  I 1502 C 0

a score=-24682.000000
s ce10.chrX               2287554 265 + 17718866 tgtatacttaaaatttgacggtgattccaaaaaaaattgtttccagccgctactagtcggtcaaatttccaattttaactaatattaggccatttttagagccattataacgttt----ttttgaaaaattttcaagaagtttcattatgaaattcggtgttttcagacaattttaattctaataaaacaata-------aaaaaattcg----------------------------actacacca--cctttaaCGTCTCGCGTGACCCAATTG--------AAAGTGATACGGTTTTCAA--------AATTAAAACAG
s caeRem4.Crem_Contig233    26587 192 -   113162 tgtcTTTCTCAA--TTGACATCGAACCGGAAAATGTTTG-----------------------------------------------------------------TTGTTACACCT----ATCaagattatctgaaa--------atgacgatAC-----------------TTTTAACAGTTCCGAggtgataaaaaatgaaaagacgGGCGTTTTTCTAACGACTCTTGTGACCCAAATGAAGACA-----TAAAAAAC------------GATACGGGTTTCAGTGCGACAC-----------------CAATCAAACAT
i caeRem4.Crem_Contig233 C 0 I 42
s caeSp111.Scaffold576      54261 177 -   128984 --------------tcggaaa-gagagaaaagaagt--------------------------------------------------------------------tttttgcATTTATTGATCTagataatctgaaa--------attacgAGAC-----------------TTTCGACACTGCCGAAGTAAT--------AAAACATGAG----------------------------AAGACGGCG-TTTTTTAACGACTCTTGTGACCCAAATGAAGGCATTAAAGCGATACGGGTTTCAGGCCGACACCAATGAAACAA
i caeSp111.Scaffold576   C 0 I 42
s caePb3.Scfld02_0        3042588 179 -  4147112 --------------ttgaaaT-ACGTTAAAAACAATTAGAC---------------------------------------------------------------TTTCTCCGTTT----Atcttcgaaatctgaaa--------atgacgaGAC-----------------TTTTGACACTGCCGAAGTAAT--------AAAACATTTG----------------------------GAGGCGGCGtttttttAACGACTCTTGTGACCCAAATGAAGGCATTAAAGCGATACGGGTTTCAGGCCAACACCATTCAAACAA
i caePb3.Scfld02_0       C 0 I 38
s caeJap4.Scaffold18213     31968 127 +   720316 ------------GGTAGacttaaaactaaaaaaaag--------------------------------------------------------------------ttccaacATTG----ACC-AGTTCGGCTGAAA--------CCTAACA--------------------ATTCGCTTTGGGTAAAGGGGTA-------AAACTATTTG----------------------------ATAAGAACA-----TGAATAAAACTAG----CCAGAGAAG------AAAGAG--------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17020559 133 - 21540570 I

a score=182611.000000
s ce10.chrX               2287819 366 + 17718866  
s cb4.chrX               17020692 467 - 21540570  
i cb4.chrX               I 133 I 748
s caeRem4.Crem_Contig233    26821 383 -   113162  
i caeRem4.Crem_Contig233 I 42 C 0
s caeSp111.Scaffold576      54480 398 -   128984  
i caeSp111.Scaffold576   I 42 C 0
s caePb3.Scfld02_0        3042805 384 -  4147112  
i caePb3.Scfld02_0       I 38 C 0
s caeJap4.Scaffold18213     32095 460 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=54847.000000
s ce10.chrX               2288185 207 + 17718866 TCTGTCT-ATGTCTCTACT--ATGCAACCCGTCGTCTCGCGTTTTTAATG---ACTATTATAAGCGTCT-G-CGAGGAC-TG------CCTGCCTAGGCCTATACCAGGACAGCAGTATAGATA-----------AAAAGGGAGGAAATGCGTTGGAATGCGCA--GAA-TTGGAAGAAAGAGGT---------------GGAATGTGATA-TAATGTAATGTTTTATTTACATCTTATGCAAAAACAATTA
s caeRem4.Crem_Contig233    27204 206 -   113162 -ACGTCT-AAGTCTCTGC---AGGTCGTTCACTCTCTCATTTATTCAAAG---ACTACCATAA---TCT-AACAAGGTC-TG------CCTGCCTATGC----------ATAGAAGGGTTGACG----------ataaaaagaggaaatgcGTTGGAATGCGCA--GAA-TTGG---AAGGAAATGGGGAGGAAAAGGCGGAGGTGGTATG-TGATGTGATGTTTTATTTACATGTTATGCAAAAACAATCA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      54878 194 -   128984 -ACGTCT-AAGTCTCCATACCAGGTTTGGTA-TCTCTCGTTCGTTCAATGACTACTACCATAA---TCT-GACGAAGGC-TG-----CCCTGCCTATGC----------ATAGATGGATTGacg-----------gaagaggaggaaatgCGTTGGAATGCGCA--GAA--------TAGGAGGC-------------ATTGGGTGGTATG-TAATGTGATGTTTTATTTATGTGTTATGCAAAAACAATCA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3043189 221 -  4147112 -ACGTCT-ATGTCTCTTTA--AGGAAGGTTACTATCTCATTCATTCAATG---ACTACCATAA---TCT-GGTGAGGACTTG-----CCCTGCCTATGC----------ATAGAAGgattgatgaa--aaaggaagaggaggaggaaatgcGTTGGAATGCGCA--GAAATTGGAAGTAGGAggcggaaagaagaaggaggaggtggtATG-TAATGTGATGTTTTATTTACATGTTAtgcaaaaacaatca
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     32555 222 +   720316 ----TCTGACGTCTCTAC---GGTTTACGCACCATCTCAACTA------G---ACTACAATAA---TCTCGGCAATgac-cggacggacggacggatgg----------atgaacggacggacggatggacggacggaagaaagaaaatgcgccggaatgcgaatggaatgtaatgaaatgaaatggaatagattggaatggaatggaatgctaatgCATTGCTTAATTTACATGTTATGCAAAAACAATCA
i caeJap4.Scaffold18213  C 0 I 1988
e cb4.chrX               17021159 748 - 21540570 I

a score=32015.000000
s ce10.chrX               2288392 181 + 17718866 CCGTTGCAATTAATTGCGAAAATGGTGGAACAATAC--GAAAAGGGAGAATAG--------------AGAAATTGAAAAGTTTGCCTCACAGAAACAACTTTTGTGTGTGTATGTACAA-------GCATGTACATTTATGCGCCTTTTGTCTAACATGTGTAGTTGTGTTTTGGTTGAGCTAAAG-TTATT-GTCGAAAATGTTT-------------------
s caeRem4.Crem_Contig233    27410 171 -   113162 ACGC--AAACTAATT---AGAGAAGTGGAACAATGT-AGAGAGGCGGGAGCGA--------------AGAAATAGGCAACTTTTTATTCAACAAACAAT------------ATGTACAACATGCTTTTGTGTACAGTGATGCATT-TTGTTCTGACATGTGTAGTTGTGTTTTGG-TGAGCTAAACGTTACT-GACGTGAtttttt-------------------
i caeRem4.Crem_Contig233 C 0 I 504
s caeSp111.Scaffold576      55072 205 -   128984 ACAC-AAAACTAATT---AGAAAAGTGGAACAATACAAGAAAGGCGGGAgcggaaagaagaagaagaagaagaaggcaactttttattcaacAAACAAC------------ACACAAAACATGCTTCTGTGTACAGTGATGAATC-TTAGTCTAACACTTGTAGTTGTGTTTTGG-TGAGCTAAAC-TTACT-GacgtgattttttttcttttgcggAACTGTTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3043410 187 -  4147112 acat-AAAACTAATT---AGAAAAGTGGAACAATACAAGAATCGCCAGCG-----------------AGAATAAGGAAACTTCTTATTCTACAAACATC------------ATATACAACATGCTTTTGTGTACAGTGAAGCCAC-TTTGCCTAACATGTGTAGTTGTGTTTTGG-TGAGCTACtt-tttttCGACGTGATTCTTTTTC--TTGCGGAATTGTTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I

a score=672.000000
s ce10.chrX               2288573 12 + 17718866 GGGCAACGCAAA----------
s caeSp111.Scaffold576      55277 12 -   128984 GCGCAATGAAAA----------
i caeSp111.Scaffold576   C 0 I 599
s caePb3.Scfld02_0        3043597 22 -  4147112 GCGCAGTGCAAATTCTCAGAAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I
e caeRem4.Crem_Contig233    27581 504 -   113162 I

a score=1025.000000
s ce10.chrX               2288585 52 + 17718866 GAACTGAGCAGAAAACCGGTGAAGAAAAAACAAAAAAAAAGAAGAAGACAAG
s caePb3.Scfld02_0        3043619 51 -  4147112 GAACAAGGCATAACTACATTggagcatgaa-aaaaaaaacaaatcaaacaaa
i caePb3.Scfld02_0       C 0 I 51
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I
e caeSp111.Scaffold576      55289 599 -   128984 I
e caeRem4.Crem_Contig233    27581 504 -   113162 I

a score=0.000000
s ce10.chrX               2288637 50 + 17718866 CCATGTTGCTCTGATATGACGGGTTTGTAAAGAAATGATGGAGGGTTACA
e caePb3.Scfld02_0        3043670 51 -  4147112 I
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I
e caeSp111.Scaffold576      55289 599 -   128984 I
e caeRem4.Crem_Contig233    27581 504 -   113162 I

a score=2445.000000
s ce10.chrX               2288687 252 + 17718866 AGTGATGATAATCATTTAGAAAACC----ATGTCACATTCCAGTTTTGTGATTCATCACACAATACATATCGATTTCTTGAATATTAGTGTTA--------TGTACACA------AGACAAGTGTTATCTAATTCGAAAGTTTGGGCGTATTTCTTGAT-ACGCCCACGTCCTGGtaaaattttaaatataataa--------aaaattagtaaaacattaaaataaaatatgaaaa----tttagtt--ttttttaaGCATAATAAAAAACCAAATAGAACGCT
s caePb3.Scfld02_0        3043721 273 -  4147112 AGTAATGATGAGActggaagaaatcaaaaatgt-acaTTCCAGTTTTGTGATTCATCTCCAAATGTTTGCC----TacgaaatttcagttttcaagaaaattgtaCACAGAAACCAGGCAAACTT--TTTGATCGGGATGTTTGTTCAAATCAACAAATGACGC-----TATCAGTACAACATTACACAAAAGAAGGTAGagtagaaataaaataatattcaaaaaagtaatgagAATCTGTTCAGTTAATACTTCACACAGAAAAAACATACATATAGAGTGCT
i caePb3.Scfld02_0       I 51 I 180
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I
e caeSp111.Scaffold576      55289 599 -   128984 I
e caeRem4.Crem_Contig233    27581 504 -   113162 I

a score=0.000000
s ce10.chrX               2288939 795 + 17718866  
e caePb3.Scfld02_0        3043994 180 -  4147112 I
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I
e caeSp111.Scaffold576      55289 599 -   128984 I
e caeRem4.Crem_Contig233    27581 504 -   113162 I

a score=1658.000000
s ce10.chrX               2289734 9 + 17718866 ATATGCGCA
s caeRem4.Crem_Contig233    28085 9 -   113162 ATGTGCGAG
i caeRem4.Crem_Contig233 I 504 C 0
s caeSp111.Scaffold576      55888 9 -   128984 atgtgcGAG
i caeSp111.Scaffold576   I 599 I 2
e caePb3.Scfld02_0        3043994 180 -  4147112 I
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I

a score=4250.000000
s ce10.chrX               2289743 28 + 17718866 --AAAAA--GTGTTCGATAGGAATATTCCTCT--
s caeRem4.Crem_Contig233    28094 33 -   113162 ATAAACACCGTTTACAAtataaaat-tctcattt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      55899 29 -   128984 --AAATACTGTGTACAATACaaaca-tcttct--
i caeSp111.Scaffold576   I 2 C 0
s caePb3.Scfld02_0        3044174 29 -  4147112 --AAATACTGTGTACAATATAAACa-tcttat--
i caePb3.Scfld02_0       I 180 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17021159 748 - 21540570 I

a score=64460.000000
s ce10.chrX               2289771 350 + 17718866 TATCTCAGTTA----TCTCATCT----------ATCGCCTGACCTTATTTT---CCCGTCATTCAA-TAAATTTGCATACCGACGTTTTGAAAGAAAAG-----AAAGCAAAAAAGGCGTTGAAGTG--GAAGAAGACGGCGTAAAAACATGACGAACATCATT---AAGATCCCATCTGAATGTCTTT----TCGTACTGCCGCCCTCGATACTGTTCGCGT----AGTGGGCAATTTGTTGCAAATTTATCGAGAACGCCGGGATTAGAACAACGAAAAAAAAACTTTGAAAGATAGAAATG-------ACGTCGA-------GAAGATTTGCGGGCGAATTTTCGAGTGGTCAGACAGGGAC-------TTTGCAAGGTA--AACATGTATA-----TCGAGATGTTTGAT---
s cb4.chrX               17021907 324 - 21540570 ---------TA----TCTCATCTACCCTCCCTACCCGCCTGACCCTACTTTTCGGACACTGTTCGT-TAAATTTGCATACTG---TTTTGGA--GAATGGAGATTTTCGGAAGTAGGCGTCAAAGTGCAGGAGGAGGC------AAAACATGACGAACATCATT---AAGATTCTATCTTAATGTTTCTTCAGAGACACATCCGCCTCCGTTGC-GCCCAAGGTAAAAGAAGGCAATTTGTTGCAAATTCATCGgaaactcga---------------gaaaaaaagtttggaaaagaGGATCTGATTTTAATGACAATGGAGAGAAAATGTGGTAGGAGGATTTGGAAAG----TGAATGGGATT------TTTGCA---------------------------------------
i cb4.chrX               I 748 C 0
s caeRem4.Crem_Contig233    28127 324 -   113162 --tctc-tcta----tctCATCT----------TTCGCCCGACACTATTTT---GGGTCTATTCGA-TGAATTTGCATACTA-----TGGGA--GAAAGA----TTTGAGAAGTAGGCGTGGAGATG-AGGGTGAGA-------AAAACATGACGAACACCATCAAGAAGATTCAATCTTAATGTTTCT----ATCCACATCCGCCCTCGAAACTGTCCGAGT----AGTGGGCAATTTGTTGCAAATTTATCGGGAACACCA---------------ACAAAAA------------GAGATTGGTTTCTGATGACGA-------AGAAAGTAGTGGGAGGATTTTGAATTG-TCCGAAACGGATTGCCGCCTTTACAATACA--AAAGAGGATA-----TAAAAACGATTTAT---
i caeRem4.Crem_Contig233 C 0 I 362
s caeSp111.Scaffold576      55928 326 -   128984 tttcct-tctcccATTCCTATTT----------TCCGCCTGACCCTATC-T---CTCTcaatttaattgaatttgCATACTA---TTTTTAT--GAAGA-----TATGGAAAATAA-----AAGGTG-TTG--AAGG-------AAAACATGACGAACATCATT---AAGATTTCATCTAAACGTTCCT----ACGCACATCCGCCCTCGACACTGTCCGAGT----AGTCGTCAATTTGTTGCAAATTCATCGGGAAtcaca-------------acagaaaaaactttctcgGGCGAGATTGA------ATGACGT-------AGATGATGACgagaagatttttgaatgaccagaaga--------------ataaaacatgaaaatgtaTGTTGATTAGGAATACTGTTCAAT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3044203 340 -  4147112 tttctc-tttc----tcctaTTT----------TCCGCCTGACCCTATCTT---TTCTCTATTCAA-TGAATTTGCATACTA---TTTTGATTGGAAAG-----ATTGAAAAGTAGGCGTCAAGGtg-ttgaaaagg-------aaaacatgACGAACATCATT---AAGATCTTATCGAAACGTTCCT----ACGCACATCCGCCCTCGAAACTGTCTAAGT----GGTGGGCAATTTGTTGCAAATTTGTCgggaataatg---------------agaaaaaaccttttt-gacaTGATTGAATTCTGATGGCGG-------AAACTATGGTGGGAGGATTTTGAAGTGGTCAAAAAGGGATTGTCGTATTTGCAAGGC---AAAAAGGATA-----TAAAAAAGATGTTTGAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I

a score=-2039.000000
s ce10.chrX               2290121 5 + 17718866 AACTA----
s cb4.chrX               17022231 5 - 21540570 GAGGG----
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      56254 5 -   128984 ----AATTA
i caeSp111.Scaffold576   C 0 I 172
s caePb3.Scfld02_0        3044543 1 -  4147112 ----A----
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e caeRem4.Crem_Contig233    28451 362 -   113162 I

a score=-2974.000000
s ce10.chrX               2290126 125 + 17718866 TGTGTAAATGA----------TTAAAAATAGGTTTTAAACATTTTTTACCTG------GATATTGTCAAGGCGAAATTGTCAGACTTAT-----------TGTTCAGAGTTC--TTCTTTTGAT----------------TTTTGTAAGTTTTACACACAAAACATTTTA
s cb4.chrX               17022236 127 - 21540570 --AGTGAATATAAAAagtgaatcaaaaa------------atttgtttttcg----------------------aattatgtgatttttggtgt------ttttcaaagttcctttttttgaaatgaatgttttcccaattttttttacttttccatc-aaaatgttttA
i cb4.chrX               C 0 I 1215
s caePb3.Scfld02_0        3044544 123 -  4147112 GAAGTTAGTGT----------TCAATAAC----------CACTTGCTTAGCATGACAAGATATCGAGAAT----aatgatttgaattttagttttttgacttttagatattcacttccttgaaa----------------attttcaatttttccatt-------tttta
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e caeSp111.Scaffold576      56259 172 -   128984 I
e caeRem4.Crem_Contig233    28451 362 -   113162 I

a score=-6122.000000
s ce10.chrX               2290251 643 + 17718866  
s caePb3.Scfld02_0        3044667 456 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     32777 1988 +   720316 I
e cb4.chrX               17022363 1215 - 21540570 I
e caeSp111.Scaffold576      56259 172 -   128984 I
e caeRem4.Crem_Contig233    28451 362 -   113162 I

a score=-4144.000000
s ce10.chrX               2290894 72 + 17718866 AAACATCTGAAAAAAATAAAAATCATGGAAAC---CGCTTAGAAAATA----------------AAAATTATGATTTTTTTTTGAGTTTTA
s caePb3.Scfld02_0        3045123 51 -  4147112 CAACGACTGCAATGAAT-------------------TCTTATAGGTTG----------------TAAACGGT--TTCTCCCGTGAA---GG
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     34765 85 +   720316 aaaaaacaaaacaaaacaaaacaaacggAAATACACTCTTACAGTAAGCAAAAATCCATGCAATAAAACGATGTTCTTTATTTTA------
i caeJap4.Scaffold18213  I 1988 C 0
e cb4.chrX               17022363 1215 - 21540570 I
e caeSp111.Scaffold576      56259 172 -   128984 I
e caeRem4.Crem_Contig233    28451 362 -   113162 I

a score=-1139.000000
s ce10.chrX               2290966  7 + 17718866 TGAAAAT---
s caeRem4.Crem_Contig233    28813  5 -   113162 --TAAAA---
i caeRem4.Crem_Contig233 I 362 I 2
s caePb3.Scfld02_0        3045174  7 -  4147112 CATAAAT---
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     34850 10 +   720316 TGGAAGGCAT
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17022363 1215 - 21540570 I
e caeSp111.Scaffold576      56259 172 -   128984 I

a score=24148.000000
s ce10.chrX               2290973 183 + 17718866 TGAATTCATAAT-----GTTTTTTGTTAACCGTGACCAAGT------CGCGCAAATCTTCTAAGCTGATTAAGTTTATCATT--CTGTCTTCTTTTCCACTGTTTGTCCTG--TCATGAATCATCAAATTCC--TGTTGCTTTGACCT-----TAAAAT-----------ATTAGAAAAAAAAAGAGAAAAGAGCACTTGTTCATCCGATCACCCA
s caeRem4.Crem_Contig233    28820 185 -   113162 TGAATTCGTCACTATCCCTTTGTTTTCAACCTTGACCAAGTTTAACATGCGTTAATCTTT---ATTGA--AAGCTGATTATT--CTGCCTTGTTCCGTATGTTTTGTTC-----AATGAGTCACACATTTCT--TGTTGATTCGACCTTT--CTGAACC-----------GTCCGGAATAAGAAGAGC----CCATTTTGTACTTCCGGCCATCTT
i caeRem4.Crem_Contig233 I 2 I 10
s caeSp111.Scaffold576      56431 181 -   128984 TAAATTCGTCAT-TCCTTTTTGTTCGCAACCTTGACCAAGTTTAACATGTGTTAATCTTC---ATTGA--AAGCTGATTATT--CTGTCTTGTTTTCCCGCTGTTGTTC-----AATGAATCAGCACTTTTT-----------GACGGTT--CTGAACC-CGC-TCTTTTG-caggaaaaagaacaa------gatcTTGTACTTCCGGTCACTTT
i caeSp111.Scaffold576   I 172 I 13
s caePb3.Scfld02_0        3045181 191 -  4147112 -----TCGtcacatcatttttgttttcaacctTGACCAAGTTTAACATGCGTTAATCTAC---GTTGA--AAGCTGATTATT--CTGTCTTGTTTCTCCACCATTGTTC----GAATGAGTCAGCgtatttt--tgttgattcgaCCTTT--CTAAATCACACTTCTTTtgtcaggaaaaaagagaa-----ctctCTTGTACTTCCGGTCACCTT
i caePb3.Scfld02_0       C 0 I 11
s caeJap4.Scaffold18213     34860 165 +   720316 TAGGTTCATCTT----TTCCTTTTTACAACCTTGACCAATTT-----CTCGCTCATCTGC---AGACG--AAGCTGATTATTTCCTATCTTGTT-------GTTTGTTCCGACACATGACTCACACGGTGTTCATATCCTTGCGACCTGTGCCTAAACA-------------CAGCTCACACGGCAG-----CCATATCGTGCA------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17022363 1215 - 21540570 I

a score=142706.000000
s ce10.chrX               2291156 331 + 17718866 ---------TTG------TGCAAATTTTTACTGTCTG-CTCCAATCAAG----TTTGCCTTGAAGTAG-------------------------------------------------CCTATTTCGGGATTGACCCTTAATGCCGACGGGACGGTCAATCG--TTCTGTGATTTG----TCACACCAAACAAGCCTGAACAAA---AGTGTGTGTTTGTGTGTTCTTCCTCCTTCAAC----TC-TCCTGCA---AGTTGA---CCCACTCTTTCGATA--TTGTTCTGTTTGTGTTTTGGGGGC-AACGGTATCAACTGGAAACGAAAAGAATGAAGCGTGCGCAAGTCAAGAGAGACAGCGTTAA-CCGTTCGGCA--CCCC-TATTTGCAC---TTGTCTCCAAAAA--TTG---GTGTTTCATT----ATTTTTC-
s cb4.chrX               17023578 317 - 21540570 ---------TTGTGCATTTGTA----TTTACTGTCTG----------------TGAGTCTTCAGGTCGGT-----------------CGGTATGCAAAGAACT-------------GCCTATTTTTGGATTG--CTGG--------------------ATG--ACGCGAACTTTGTGTCTCACACCAAACAAATCTGAATGTT---CA-----------------------GGCCGGCTGACCC----TGCAAAGAgttgacccccccccccctcgaTATTTTGTTCTGTTTGTGTTTTGGGGGC-AATGGTATCAATCGAAA---AGAATGAAGAAGCGTGCGCAAGTCAAGAGAGACATCGTTAACCCGTTCGGCATCTCCCATATTTGCACTATTTGTTCCCAAAAATGTT----GTGtttcatccaaaa-atttt-
i cb4.chrX               I 1215 C 0
s caeRem4.Crem_Contig233    29015 345 -   113162 ---------TTG------TGTA----TTTACTGTCTG-CACAGTTCAAGT--TTGTGTCTCCCAGTCGGC---TCA-----------CTGTGTGCAGAGTCCTCCAGGAGGATCAGACCTATTTTGGGATTGACCTGGTT-ATTGGTGGG-------CGTG--TCCCGTAATTTG----TCACACCAAACAAGCCTGAACGTA---AATGTG----------------CACGTCCAGGCGACCC-TCTTGCAGCAAGTTGA---CCCACTCTTTCGATA--TTGTTCTGTTTGTGTATTGGGGGC-AATGGTATCAatcgaaaacgaaaagaatgaAGCGTGCGCAAGTCA--AGAGACATCGTTAA-CCGTTCGGCAT-TCCCCTATTTGCAC---TCGTtcccaaaaa--tt----gtgtttcatc----a-ttttc-
i caeRem4.Crem_Contig233 I 10 C 0
s caeSp111.Scaffold576      56625 334 -   128984 ---------TTG------TGTA----TTTACTGTCTGCCCCTATTCGA--------GTCTCCATGTCGGCCGCAGA------------TGTGTGCAAACGTCTCGA----------CCCTATTTTAGGATTGAACCCATCGataagtggg-------cgtggcccCCGTAATTTG----TCACACTAAACAAGCCTGAACACA---AATTTG----------------CTCGTCCAGCCG--CCGTCTTGCAGCAAGTTGA---CCCACTCTACCGATA--TTGTTCTGTTTGTGTTTTGGGGGCTAATGGtatcaattgaaaacgaaaagaatgaagCGTGCGCAAGTCA--AGAGACATCGTCAA-CCGTTCGGCAT-TCCC-TATTTGCAC---tcgtttccaaaaa--tt----gtgTTTCATC----G-TTTTC-
i caeSp111.Scaffold576   I 13 C 0
s caePb3.Scfld02_0        3045383 331 -  4147112 ---------TTG------TCTA----TTTACTGTCTGTCTCCGTTGAAG----TTGGTCTCCAGATCGG----AGAGTCCTAATCGTCTGTGTGCAG--------------------CCTATTTCGGGATTGACCTCTCTCATAAATGGG-------CGTA--TCCCGTAATTTG----TCACACCAAACAAGTCTGTACAGA---AATGTG----------------CTCCTCCAGCCG--CC-TCTTGCAGCAACTTGA---CCCACTCTTTCGATA--TTGTTCTGTTTGTGTTTTGGGGGC-AATGGtatcaattgaaaacgaaaagaatgaAGCGTGCGCAAGTCA--AGAGACATCGTTAA-CCGTTCGGCA--TCCC-TATTTGCAC---TCGTTCccaaaaa--tt----gtgtttcatc----a-ttttc-
i caePb3.Scfld02_0       I 11 C 0
s caeJap4.Scaffold18213     35025 284 +   720316 GTATGCACATTgcg----ggta----tttattgtccg----------aGTGCTTGAGTCTGGGAG----------------------------------------------------Actattttcaagtt-----------ttgacGAA-------TGCG--ACG---AAATTG----TCACACTAAACAAGCTTCAATGAATGGAAAGTG------------------CGTTGAGGGTGTCC-TCCCG------ACTGA--------------GGTA--TTGTTCTGTTTGTGTTTTGGGGGC-AGTGGTATCAAACGAAA-CGAAAAGACTGAAGCGTGCGCAAGTCA--AGAGACATCGTTAA-CCGTTCGGCA--CCCC-TATTTGCAC---tcgtttccaaaaa--tttttcgggTTTCATC----C-CTTTCC
i caeJap4.Scaffold18213  C 0 I 44

a score=981.000000
s ce10.chrX               2291487 57 + 17718866 CTCACAACTTGAAATG----TGTTT--TATGTACATGTTTTCCTTAGTTACAGTTACTCTGTT---------------------------------
s cb4.chrX               17023895 53 - 21540570 tccacaACTTG-ACTC----TGTTT--TCTTT---TGTGTTCTTTTCTGAAGGTTGCACTTTT---------------------------------
i cb4.chrX               C 0 I 1109
s caeRem4.Crem_Contig233    29360 33 -   113162 gtCACAACTTG-ACTG----GATTTTGTCTAT---TGTGTT-------------------------------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      56959 78 -   128984 GTCACAACTTG-ACCGacgttgttt--tcttt---tgtgttCTTTT----AAAATGCACTTTTAAAATT--------CACAACTATTCCTTCTATA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3045714 85 -  4147112 gtCACAACTTG-GCcg--gttgttt--tcttt---tgtgttctttc---aaaaatgcacttttAAAATTCATTCCTGCACAATTACTAAGGCTCGA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     35309 44 +   720316 I

a score=-31275.000000
s ce10.chrX               2291544 184 + 17718866 CATCGAAAT---TGTTTGTAGACTCGA------------TATGTAATTTAACATTTCAATCAAACATTTTTCAT--AATTGTCAGAAAGTGGCAAGTATCTAG-----------------ATTTCAGCTAACATAATTTCTTT---------------------------------TGTTTCTTGTGAAAAT-TCAGTTTT-----------------------------CACCAGTTTT---TTGAAAGTCGTCGATATGA---------ACACTCATATTTCAAAGTTATA
s caeRem4.Crem_Contig233    29393  99 -   113162 --------------CTTTTGAATTGCA------------------------------------------CTTTT--AA--------AAGGCACAAATc-ctat-----------------attt-------------t--------------------------------------tgtttatttt--cattttcaaattt----------------------------------tttct---ccaga--tt-----cgtga---------aatttcatg-ttcaaaatt---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      57037 144 -   128984 AATCGTAGTGACTTTtggtgaaatgaa---------------------------------aaaatatttttttc--aaac------agagCCCACAAA-CAAT-----------------GTTTGGC----------TTCAAG---------------------------------TAGCTATTTTAACATT-----AATT-------------------ATATAGAAACAATGAGTTTT--AACAAAATTT-----cctga---------aaactgat--tttaaaa-----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3045799 273 -  4147112 GCTCTGAATG--TTTGCGTGGGCAGAAGTTTATTCGGAGTCCGCTGACCAACAGAATTTCAAAGCTTCTTTCTCTGAATC------AAATCGGAAGAA-CATTCACCAATCTATGCGATCGCTTGACCGAAC---ATTCCAAAGTTacctctgaattttttgtgttcgcCTTTATCTAcctattctgaaaatctcaaaattttgaacaaaatcgGCCCCAAAATAGAAG-AGGGATTTCTACACCAGAAATT-----CATAATTCcatttggaattcat--ttcaaagttgTA
i caePb3.Scfld02_0       C 0 I 60
e caeJap4.Scaffold18213     35309  44 +   720316 I
e cb4.chrX               17023948 1109 - 21540570 I

a score=-2059.000000
s ce10.chrX               2291728 56 + 17718866 GAAGTTCCAGCATGTGACAATGCTTTAGATTTCTCCAGA-AATTGTTCACACTTTTT-
s caeRem4.Crem_Contig233    29492 36 -   113162 --attttttgaata---------------attcttCAAATAATT-----CACCTCTCC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      57181 28 -   128984 --------agaatg---------------TCACTCCGAA-AGTT-----CATTGTTC-
i caeSp111.Scaffold576   C 0 I 1
e caePb3.Scfld02_0        3046072 60 -  4147112 I
e caeJap4.Scaffold18213     35309 44 +   720316 I
e cb4.chrX               17023948 1109 - 21540570 I

a score=-22417.000000
s ce10.chrX               2291784 168 + 17718866 TGATTTCaaata------------------atacattttcaattttt------------ttttgaaaatttataatat-------ttaGTTATGAT-----------------------------------------------------------------------ATTCATTTGTTTTAGCACTATAAAAAATTGTTTTAAAGCATTTTACCACACGGCCGTAGTCCACATTCGAAACAGATTTGTCCAAGAACATAGTGTTATTCCATTTTTG------------------
s caeRem4.Crem_Contig233    29528  93 -   113162 ------------------------------ATACCCCTCCGTTTCTT--------------------------------------TTGACTAGAACT-------------------------------------------------------------------------------TTTTAG---TAA----------ATCAAAACA----ACCAAAG------------------------------------AAACACTG-TAACCCACGCCTAATAACACCTTCCACTTGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      57210  99 -   128984 TGAAGTC------------------------------------TCTC--------------------------------------CTAAATATGAT--------------------------------------------------------ATGAATACAC------------TGTTTTTG---CGAAAAGAAAGATatcaaaaca----acaaaaggGC---------------------ATTTTGTGTAGAAGACAATG-TAACCCA------------------------
i caeSp111.Scaffold576   I 1 C 0
s caePb3.Scfld02_0        3046132 243 -  4147112 tggaGTCGAATAATCTGGAACAAAcgtatatttctttttcgattttcattaCCAGAtcgttttgaaa----gaaaaattcaaaaattatatatgattttccctttttttttcgtttcaggcAGGTTTTGCTGGATTTAAAACCTGTATAAAGAAGAATACTCccaatgtaaatttttttttgttttgaacaacatgatatcaaaaca----acaaaagaac---------------------aCTT--CCCAAAAGACATTG-TAACCCATTCCT-------------------
i caePb3.Scfld02_0       I 60 C 0
e caeJap4.Scaffold18213     35309  44 +   720316 I
e cb4.chrX               17023948 1109 - 21540570 I

a score=15862.000000
s ce10.chrX               2291952 106 + 17718866 --------------TGTAACCCGTATAACTAACTATTTTTTCTAAGAAACATTTGCAGAAAATGCATTTTCTG----ACAAAAGAATGCATATATCACACACACACACTA-TAAAAGTTCACACC
s cb4.chrX               17025057  96 - 21540570 TGTAACCCATACCTAACAAAATCTTCAAC--------GTTTC-----------AGGAAGAATCGCATTCTCTAAAACACAAAAGAATGT-CAT--------CACACCCTAGAAAAAGTTCACAC-
i cb4.chrX               I 1109 C 0
s caeRem4.Crem_Contig233    29621  66 -   113162 ------TCAT----------------------------TTCC-----------TGAAAGAAATGTATTTTCTG----ACAAAAGAATATATAT--------CACACCCCA-CAAAAGTTCACAC-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      57309  82 -   128984 ----------------TAACATctccaacttctttttctttc-----------tggaagaaatacattttctg----acAAAAGAATGCATAT--------CACACCAC---AAAAGTTCACAC-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3046375  83 -  4147112 --------------TCTAACGCCTTCAGCCTTTCCTTTTTCC-----------TGGAAGAA--ACATTTCTCG----ACAAAAGAATACATAT--------CACACCACA--AAAAGTTCACAC-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     35309  44 +   720316 I

a score=69351.000000
s ce10.chrX               2292058 188 + 17718866 CACCACCACT------CTAGAAAAATGTTGTTTCTTCT-TTCTCTTTCTCACATCTTCATTCCTTTTC--------------------------TACTCGCACTTCTTCAGTACTCATGTACATGTCAGATGTTGTCTTCAAACCTTCTCA-------------------------------------AGCCTTGATTTTTGAGTTTTCGTGTCAGAGCGTGCCTT-GAAAAGTTCGTGTGCTCTGGACTCTAAGGTCA
s cb4.chrX               17025153 196 - 21540570 -----CCACT------TCAAAtg-------------ct-ttcttcttctc----ccctcTTCTCTTGTCAGTACTCGAAAATGCTGtctttggacttctacttttttcttc-a-tcatctccctct------ctgttttttcttttctcca-------------------------aaaaaagggATGCGccttgatttttgagttttcgtgTCAGAGCGTGCCTG-GAAAAGTTCGTGTGCTCAGGACTCTAAGGTCa
i cb4.chrX               C 0 I 30
s caeRem4.Crem_Contig233    29687 181 -   113162 -----CCACT------CTAAAAg-------------tt-gtcttctttt------cctaTTCCCCTGT---------------TTCTCTTCAACTTTTCACATTTCCCAAA-ACCCATGTACATGTGAAATGCTGTCTTTGGACTCCTC------------------------------AAGAGGATGagtcttgatttttgaattttcgtgtCAGAGCGTGCCTT-TAAAAGTTCGTGTGCTCTGGACTCTAAGGTCA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      57391 169 -   128984 -----CCACT------CTAGaag-------------ttgttctttttct------ttttctccttttc-------------------------attcctccttttcttcag-----atGTACA-------TGCCGTCTTTAGACTTCGctc-----------ctt-----------caaaaaaggatgagtcctgatttttgagttttcgtGTCAGAGCGTGCCTT-GAGAAGTTCGTGTGCTCTGGACTCTAAGGTCA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3046458 172 -  4147112 -----CCACT------CTAAAAG-------------TC-ttcccttttt------ctcattccttttc--------------------------ttctcactcTTCTTCAGTACTCATGTACATGTGAAGTGCTATCTTTGGACTTC-----------------------------TACAAGAAGATGagtcttgatttttgagttttcgtgaCAGAGCGTGCCTG-GAAAAGTTCGTGTGCTCTGGACTCTAAGGTCA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     35353 202 +   720316 ---CACCattattttgttgaaag-------------tt-atgtttttct------tatttttcttgta--------------------------ccttgtcttttttcctg--tttatttccatatttatCGAATCTTCTTGACTTTTCATTCATGCTGACGcttaaaaaccaaaaccaaaaaagatgTGGATTGCTCTTTGAGTTTTCGTGTCAGAGCGTGCCTCAAAAAAGTTCGTG------GGACCTTAAGGTCA
i caeJap4.Scaffold18213  I 44 C 0

a score=2522.000000
s ce10.chrX               2292246 4 + 17718866 GGCA
s caeRem4.Crem_Contig233    29868 4 -   113162 GGCA
i caeRem4.Crem_Contig233 C 0 I 21
s caeSp111.Scaffold576      57560 4 -   128984 GGCa
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3046630 4 -  4147112 GGCA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     35555 4 +   720316 GCCG
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17025349 30 - 21540570 I

a score=-1648.000000
s ce10.chrX               2292250 1 + 17718866 -A
s caeSp111.Scaffold576      57564 1 -   128984 -c
i caeSp111.Scaffold576   C 0 I 35
s caePb3.Scfld02_0        3046634 1 -  4147112 -T
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     35559 1 +   720316 G-
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17025349 30 - 21540570 I
e caeRem4.Crem_Contig233    29872 21 -   113162 I

a score=-2009.000000
s ce10.chrX               2292251 22 + 17718866 CATGAAAAAAAGCAAAAAGGAT
s caePb3.Scfld02_0        3046641 12 -  4147112 CATGTCGAGCAG----------
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213     35560  1 +   720316 C---------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17025349 30 - 21540570 I
e caeSp111.Scaffold576      57565 35 -   128984 I
e caeRem4.Crem_Contig233    29872 21 -   113162 I

a score=0.000000
s ce10.chrX               2292273 9 + 17718866 GGGTGAAAG
e caePb3.Scfld02_0        3046653 0 -  4147112 C
e caeJap4.Scaffold18213     35561 0 +   720316 C
e cb4.chrX               17025349 30 - 21540570 I
e caeSp111.Scaffold576      57565 35 -   128984 I
e caeRem4.Crem_Contig233    29872 21 -   113162 I

a score=-1721.000000
s ce10.chrX               2292282 5 + 17718866 GAGGC
s cb4.chrX               17025379 5 - 21540570 GCGGC
i cb4.chrX               I 30 I 1
s caeSp111.Scaffold576      57600 3 -   128984 -aag-
i caeSp111.Scaffold576   I 35 C 0
s caeJap4.Scaffold18213     35561 2 +   720316 GA---
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3046653 0 -  4147112 C
e caeRem4.Crem_Contig233    29872 21 -   113162 I

a score=27375.000000
s ce10.chrX               2292287 186 + 17718866 AAAATGTT--TATATTTCAGTATCCTCAT---------AAAAATGTTGATATTTTCT-A---TCAACAAAAAAGCAAAAGA------ATT---TTCTCTACCTTCATTT-----TATATGTTCACGTTTAAACTTGAACCTTCCAGTGG--------TCTTGTTCTATTCTATCT----------TGAG-------------------------CTCTA---TTTCTAATTTTGATTGGAATGTTTGCCAGATAATAGATT
s cb4.chrX               17025385 203 - 21540570 AATTTGTTTATATATTCTAGTATCCTTTTCTCTCCATATGAATTGTTGATGTTTGCA-A---TCAACAAAAAAGCATAGAACCAActctc---ctttctctcttttttc-------------------------taaacccaatggtttcctgcttctctttttgctcttttttt----------tttaatgccatcgtttttctttttctcttctctg----aGCTCCAATTAATT----TGTTTGCCAATT--------
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    29893 208 -   113162 GAAATGTTTATATATTTTAGTATACTCTC---------TGAATTGTTGATATTTTCt-a---tcaacagaaaaa---agaatgaattatttgattcattctcttctttcacCTCTAACTCTTCACGTCTACAATTAAACCAAttggttt--tgattttctttttcttctcgtttt----------ttca-------------------------ttcTGAGCCAGCTCAAATTAATTGGAATGTTTGCCAATTGAAAGGTT
i caeRem4.Crem_Contig233 I 21 I 4
s caeSp111.Scaffold576      57603 189 -   128984 -aaatgtt--tATATTCCAGTATCCTTCT---------CCAATTgttgatatttttc-a---tcaacaaAAAAGCACAAAACG-GGCATT---Tcgtttctct------------atttctttctGTCTAAAACTAAACCCTTTGGTTC--TTTCTGccgttttccttcttttta----------ttcg-------------------------ttCTT---TTGCTCCATTTAATTGAGGTGTTTGCTAATTCGAAGGTT
i caeSp111.Scaffold576   C 0 I 7
s caePb3.Scfld02_0        3046653 199 -  4147112 -AAATGTT--TATATTTTAGTATCCTCTC---------TGAAttgttgatatttttcta---TCAAC-AAAAAGCATAGAAAGTGgaatt---ccatttcttttc---caccttcatttttctgtgtctAGAGTTAAACCctttggttc--ttcatttcatttcctttctttttt----------ctgc-------------------------ttctt---ctgttcAAATTAATCTAGGTGTTTGCCAATTGAAAGGTT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     35563 171 +   720316 AAAATGTT--TATATT--------ATTCC---------AGAATTGTTGATAATGCCG-AAGCACAGCAGAAAAA----------actctt---ctctctctcttctaCCTTTCATACCTCCAAAGCCATACATTCATTCCCAatggttc-------ttttttttcttcaatgtTTGCAaataccattcg-------------------------ttttt---ctgCAC-----------GGAAGTTGCTA-----------
i caeJap4.Scaffold18213  C 0 C 0

a score=333.000000
s ce10.chrX               2292473 38 + 17718866 ACGGCAAAGTGTGAAGAAAACTGAGACCAAAAAAAAAA
s caeJap4.Scaffold18213     35734 28 +   720316 A----------TGAAACAATAAGAAACGGAAAAGAAAA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3046852  0 -  4147112 C
e cb4.chrX               17025588  0 - 21540570 C
e caeSp111.Scaffold576      57792  7 -   128984 I
e caeRem4.Crem_Contig233    30101  4 -   113162 I

a score=158470.000000
s ce10.chrX               2292511 403 + 17718866  
s cb4.chrX               17025588 396 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    30105 433 -   113162  
i caeRem4.Crem_Contig233 I 4 C 0
s caeSp111.Scaffold576      57799 429 -   128984  
i caeSp111.Scaffold576   I 7 C 0
s caePb3.Scfld02_0        3046852 435 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     35762 430 +   720316  
i caeJap4.Scaffold18213  C 0 I 163

a score=2404.000000
s ce10.chrX               2292914 11 + 17718866 TTATAT-------CAACC
s cb4.chrX               17025984 18 - 21540570 TTCTATATCAATACCCTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    30538 11 -   113162 TTCTAT-------CACTC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      58228 11 -   128984 ATCTGT-------CAGTC
i caeSp111.Scaffold576   C 0 I 202
s caePb3.Scfld02_0        3047287 11 -  4147112 ATCTAT-------CAGTC
i caePb3.Scfld02_0       C 0 I 285
e caeJap4.Scaffold18213     36192 163 +   720316 I

a score=-3716.000000
s ce10.chrX               2292925  9 + 17718866 AC------CTATCCA---------------------------------------
s cb4.chrX               17026002 54 - 21540570 TTTGGTgacttctcatttttttcgtttttgtctACTATCAGCGGTTATTCTGAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    30549  9 -   113162 CT------CCTCCCA---------------------------------------
i caeRem4.Crem_Contig233 C 0 I 199
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e caeSp111.Scaffold576      58239 202 -   128984 I

a score=1265.000000
s ce10.chrX               2292934 155 + 17718866 AGT-AACAAATTTATGAGTATCACTTTTG-TAGTTTGCCAATTATTTTAAATTGAGAAAAATAGTAGTAAACACATGTTTTCATATTCTTAAATTTTGTTCAATTAC--AGTTTTTTG----TTGTGAATTTTGTAAATTTCCGATCTGAAAAAAATGTGATT
s cb4.chrX               17026056 162 - 21540570 AGTGAATCAATTTAGGTTACTCACTAATAATAGTTttccttaaaatttgaaatatgaaaagttATAGTTGAAAAAGGTTATT-TAATCTGAAGTAAATCTCAATTacttggtttttcaaaatttttaaattaaaaagatTTTCTCTCACAAAATATTTCTATT
i cb4.chrX               C 0 I 15
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=0.000000
s ce10.chrX               2293089 11 + 17718866 GAAATTAATAC
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e cb4.chrX               17026218 15 - 21540570 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=-87.000000
s ce10.chrX               2293100 174 + 17718866 GAGGGCTGTTTTTAGGA----CCACAAATTTAAAATATAGATGTATACAGCGCTCTAAGAAAATATCAAAAACGTtgtaaaaaaattttcacataatttgtaggaattttctgtttcta-----ttttagtgtggaaa-----------aaataaaagaagcgtgataatgattttcgctcatcaaagtgacgt
s cb4.chrX               17026233 158 - 21540570 GAGAGGCGCGTATCGGAGAAACCACTGtcataaacttttgaaatat------------gaaaatatgacaaatgt--------aattttctataattttgtttttacttatttttccTAGCTActgtgatttttgagatatgcgcctttaaacaaaaCTAGCGC----------------TAGTAAAGTGAAGT
i cb4.chrX               I 15 I 64
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=0.000000
s ce10.chrX               2293274 69 + 17718866 catttttgaaatttttgcactgctgagcaaatacatgagactttcttgattattttgctaaaaatttga
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e cb4.chrX               17026391 64 - 21540570 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=-657.000000
s ce10.chrX               2293343 319 + 17718866 tatgaaaaacagtttgt------caattttcccgacatttttcctttaaaaaaaaaggaaaatttaggtttatatttagcacaattttaggtttttattgaatttatatttggtaatcaatttttctttacggaaaaattggctgaaaaattggcaaactgtgatttacaaaaaatattaaagaaaaaaGGAATTCAGAAGTTTTTTTTGTTGCTTTTGTTTCAATTGCTTTAAGGGCAGCAAAAttgaaaaaaaaaatttcaaaaaataaaaaaaattgcataaatattttttcaactttatttggtcattacggtctattttc
s cb4.chrX               17026455 241 - 21540570 tatgaaaa----tttgtaaaactcAGTTTCCTATATACCGTACCAGTCAATGAGG---------TATTTTCTCTTTTACAGCAACTTACCGTTTTC--TGACAGTCACctggttttttgagttttcattACAGAAACA--GGTCAAAA---TGG------GTGTCTTACAAAAActggcaaatatctgaaaaaccaagaattttttt-----------------------------------------------aaaaattcggtaaatgcaaagttttcaatctatttCTGTTCCACATTCTCCAAC-----------ATTCTC
i cb4.chrX               I 64 I 43
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=0.000000
s ce10.chrX               2293662 54 + 17718866 tttcaattaaagcaagaaTTTTTTTGCGGTTTTTTATTTATAACCTTTTTTATT
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e cb4.chrX               17026696 43 - 21540570 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=-802.000000
s ce10.chrX               2293716 413 + 17718866 TAAAAATAACCTGTTCTTAGAAGTAGTAAATACCATATGTTTTCTATTACTG--CAGCACTTAATCATGAAAGGTTTTTGTTGATTTTAAAAATATCAGTAAACGAAACTAAAAGAAATGGTTGAACATTactttttcagttgac-actttttga--------atcaaaactaaggataaatttatgcagccaaagttgagcaacgatgtgcatcactaatagagaaagtatagtaGTAGTTTTGCAATTTTTTAATACTGTACACAATCTAGCTTAATGAAAA---TAACATCAAAACATTGATTTAAATTTTTTTTTACATTACTTCATTTTTCTATTCAACACTATTTTAATTATAAGATTCATTAATTTTTCAAAGATTTTGAATTCAGTAATATTCA--TAGAGTTTTTGTTGACTAAATATAT
s cb4.chrX               17026739 324 - 21540570 tgaaaataacca------aaaaatgaaaaacaatttttttttcatcttattgactggtactgtatc---------------tcattttctaaatGTGGATcacaaagtttgaaa---------------tattttgtcagtcgaCCACTCGTTGATACCTTTCatggaaaatgag-ataaattggc----tcaaaattgaaagtgaaggagtcattctattagag------------tagctacgaaagtttctaaaaattggaaacatctatttt--taaaaagttttactCCCGAA---------AAATCCTTGTCTTTATTATTTC--------------------------TATAAATGTTTATAGTGttctatcatttttgattCCATTGATGTTCAAGTGAAActtct---------------
i cb4.chrX               I 43 C 0
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e caeJap4.Scaffold18213     36192 163 +   720316 I
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=91.000000
s ce10.chrX               2294129 1 + 17718866 A
s caeJap4.Scaffold18213     36355 1 +   720316 A
i caeJap4.Scaffold18213  I 163 C 0
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e cb4.chrX               17027063 0 - 21540570 C
e caeSp111.Scaffold576      58239 202 -   128984 I
e caeRem4.Crem_Contig233    30558 199 -   113162 I

a score=727.000000
s ce10.chrX               2294130 7 + 17718866 ACTCAGA
s caeRem4.Crem_Contig233    30757 7 -   113162 ACTTGGA
i caeRem4.Crem_Contig233 I 199 I 1
s caeJap4.Scaffold18213     36356 7 +   720316 ATCCGAA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3047298 285 -  4147112 I
e cb4.chrX               17027063 0 - 21540570 C
e caeSp111.Scaffold576      58239 202 -   128984 I

a score=205042.000000
s ce10.chrX               2294137 723 + 17718866  
s cb4.chrX               17027063 660 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    30765 642 -   113162  
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      58441 667 -   128984  
i caeSp111.Scaffold576   I 202 C 0
s caePb3.Scfld02_0        3047583 683 -  4147112  
i caePb3.Scfld02_0       I 285 C 0
s caeJap4.Scaffold18213     36363 676 +   720316  
i caeJap4.Scaffold18213  C 0 I 42

a score=-4292.000000
s ce10.chrX               2294860 26 + 17718866 GCATTTTATTG-------TTTCATACAATATAT----
s caeRem4.Crem_Contig233    31407 36 -   113162 ATATctaattaagaaaaatttgaaaagaaaaac-gct
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      59108 30 -   128984 TCAGCTAATTG-------ctgtattttaaaaatggtt
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3048266 34 -  4147112 aaaaatatttg--aaaaactaaactttATTAGT-ATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     37039 42 +   720316 I
e cb4.chrX               17027723  0 - 21540570 C

a score=243564.000000
s ce10.chrX               2294886 308 + 17718866 TCAGCGTTTTACAACTCGATGAAGCAACTTTCAATGATACCATTTTTGGTGCTCAGTCCGGCGCTGCAGGATATCTCGTAGAGGTAGTACAAAATTGAAACTTTTATTTCTT-----ACAGA---CAAAA----TGTTT------TTCAGTTCTACTCCGACTGGTGTGGTCACTGCCGAGCGTTTGCTCCAACCTACAAAAACCTTGCGAAAGATGTTGATGGCTGGCAGAATATTGTAAAAATTGCTGCAATCAACTGTGCTGATCCAGTGAATGAGCCAGTGTGTCGATCAAACGGAGTTCGATTTTTCCCATTAATCAAGGT
s cb4.chrX               17027723 302 - 21540570 -TAGTGTTCTACAACTTGATGAAATTACTTTCAATGATACTATCTTTGGACCGCAAGCCGGTGATGCAGGATATCTGGTGGAGGTA---------------Tgtaaatctttaaaaattgaa---caaaaccTTTATTCCT----TTTAGTTCTATTCGGATTGGTGCGGTCATTGTCGAGCTTTCGCCCCAACTTACAAAAATCTCGCCAAAGATGTGGACGGCTGGCAGAGCATTGTGAAAATCGCTGCTATCAACTGTGCAGATCCGGTTAATGAGCACGTGTGCCGTTCGAATGGTGTCCGATTCTTCCCATTGATTAAGG-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    31443 301 -   113162 TTAGTGTTCTTCAACTCGATGAGGTTACATTCAATGACACAATTTTTGGATCACAGTCTGGTGATGCAGGATATCTTGTGGAGGTA----------------ATAATTATTT---AACTAAC---CAATGCC--TATTCGTGTAATTCAGTTCTATTCTGACTGGTGTGGCCATTGTCGAGCATTTGCTCCAACCTACAAAAATCTCGCAAAAGATGTCGATGGCTGGCAGAATATTGTCAAAATCGCTGCGATCAACTGTGCAGATCCGGTCAATGAGCACGTGTGCCGATCAAATGGTGTCCGATTCTTCCCATTGATCAAGG-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      59138 301 -   128984 ttagCGTTCTTCAACTTGATGAGGTCACATTCAATGATACCATCTTTGGACCCCAAACCGGTGATGCAGGATATCTTGTAGAGGTA---------TACAGCCGGATaggttt-----tcaaa---caaaaat--cagtt------ttcagttCTATTCTGATTGGTGTGGTCATTGTCGAGCATTCGCTCCAACTTACAAGAACCTCGCCAAAGACGTCGATGGCTGGCAGAACATTGTCAAAATCGCTGCAATTAACTGTGCAGATCCGGTGAACGAGCATGTTTGCCGATCGAATGGAGTCCGTTTCTTCCCGTTGATCAAGGT
i caeSp111.Scaffold576   C 0 I 28
s caePb3.Scfld02_0        3048300 306 -  4147112 TTAGTGTCCTCCAACTTGATGAAGTTACATTCAATGATACTATTTTTGGACCACAAACTGGAGACGCAGGATATCTTGTAGAGGTG-------ACTATCACCAAACTCCCTT-----CTAAGTTccaattgt--tattt------ttcagttctactCCGATTGGTGTGGTCACTGCCGAGCATTTGCTCCAACCTACAAAAATCTTGCGAAAGATGTTGATGGATGGCAGAACATTGTCAAGATCGCAGCAATAAACTGTGCAGATCCGGTAAATGAGCACGTGTGCCGATCAAACGGAGTCCGATTCTTCCCATTGATCAAGGT
i caePb3.Scfld02_0       C 0 I 1
s caeJap4.Scaffold18213     37081 259 +   720316 TCAGTGTACTGCAACTTGACGAAGCTACTTTTAACGACACCATTTTTGGTCCCCAAACCGGTGATGCTGGATATCTCg-------------------------------------------------------------------tcgagttctattccgattgGTGTGGTCACTGTCGAGCTTTTGCACCAACTTACAAGAATCTTGCAAAAGATGTAGACGGATGGCAGAATGTTGTCAAAATTGCGGCAATTAACTGCGCAGATCCCGTAAATGAACATGTATGCAGATCCAACGGAGTCCGTTTCTTCCCATTGATTAAGGT
i caeJap4.Scaffold18213  I 42 C 0

a score=-6031.000000
s ce10.chrX               2295194 26 + 17718866 TTTTGTTTTGAAAAATAA--------------GTTCGTTA
s cb4.chrX               17028025 18 - 21540570 ---TAATTTGATACC-------------------TAGTTC
i cb4.chrX               C 0 I 8
s caeRem4.Crem_Contig233    31744 18 -   113162 ---TAATTTGATATG-------------------TCGTGT
i caeRem4.Crem_Contig233 C 0 I 5
s caePb3.Scfld02_0        3048607 14 -  4147112 -----ATTTGATACG---------------------GTTG
i caePb3.Scfld02_0       I 1 I 14
s caeJap4.Scaffold18213     37340 36 +   720316 ----TGTTTAATGAGCAAAGCTTGaataacatattttttt
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      59439 28 -   128984 I

a score=165336.000000
s ce10.chrX               2295220 176 + 17718866 AACAGT--AAACTTTCAGTATTTCCCTCGTGATTCTTTGAACTCCACGGAAGGATCTCAAATTAAACCATACTCAACGGTTTCTGAAATGAGAGGGCAACTTACAAAGGCAGTAATGGATGATTATGCACTCAACCGATACCCGGAATGGCCGACATTTGATTTCTTGAAGGAGTGAG
s cb4.chrX               17028051 178 - 21540570 AATCATacaaaaattcagtattttccACGTGACTCGATCAACTCCACCGAGGGATCTCAAATCAAGCCGTACTCGACGGTTTCTGAGATGAGAGGACAGTTGACAAAAGCTGTGATGGATGATTATGCACTGAATCGGTATAAGGAATGGCCAACGTTTGATTTCTTGAAAGAGTGAG
i cb4.chrX               I 8 C 0
s caeRem4.Crem_Contig233    31767 178 -   113162 AATAACAACTTTGTTTAGTATTTCCCACGTGACTCTATCAACTCCACAGAGGGATCTCAAATTAAACCATACTCAACTGTTTCTGAGATGAGAGGGCAACTAACGAAAGCTGTTATGGATGATTATGCATTGAATCGTTATAAGGAGTGGCCAACTTTCGATTTCCTGAAGGAGTAAG
i caeRem4.Crem_Contig233 I 5 I 38
s caeSp111.Scaffold576      59467 176 -   128984 AACAAT--CTGCATTTAGTATTTTCCACGTGACTCCATGAACTCCACAGAGGGATCACAAATTAAACCTTACTCCACTGTTTCTGAAATGAGAGGACAGCTTACAAAGGCAGTTATGGATGACTATGCTCTTAACCGTTACAAAGAATGGCCAACTTTCGACTTTTTGAAGGAGTGAG
i caeSp111.Scaffold576   I 28 C 0
s caePb3.Scfld02_0        3048635 176 -  4147112 aacaat--ttttgtttagtATTTCCCACGTGACTCTATCAATTCCACAGAAGGATCACAAATTAAACCATATTCGACTGTATCTGAAATGAGAGGACAACTCACCAAAGCTGTTATGGATGATTATGCATTGAACCGGTACAAAGAATGGccaacttttgatttcttgaaggAGTGAG
i caePb3.Scfld02_0       I 14 C 0
s caeJap4.Scaffold18213     37376 169 +   720316 ---------caaattcagtATTTTTCACGAGAATCTACCAACTCTACAGAAGGATCCCAAATAAAACCATACGCAACGGTTTCTGAGATGAGAGGGCAACTTACCAAGGCGGTTATGGATGACTATGCACTCAACCGTTATAGAGAATGgcctacttttgatttcttgaAAGAGtaag
i caeJap4.Scaffold18213  C 0 C 0

a score=187.000000
s ce10.chrX               2295396 1 + 17718866 T
s cb4.chrX               17028229 1 - 21540570 T
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      59643 1 -   128984 C
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3048811 1 -  4147112 T
i caePb3.Scfld02_0       C 0 I 29
s caeJap4.Scaffold18213     37545 1 +   720316 c
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=332.000000
s ce10.chrX               2295397 3 + 17718866 TGC
s cb4.chrX               17028230 3 - 21540570 GGC
i cb4.chrX               C 0 I 341
s caeSp111.Scaffold576      59644 3 -   128984 agc
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3048812 29 -  4147112 I
e caeJap4.Scaffold18213     37546 0 +   720316 C
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=182.000000
s ce10.chrX               2295400 2 + 17718866 AA
s caeSp111.Scaffold576      59647 2 -   128984 aa
i caeSp111.Scaffold576   C 0 I 20
e caePb3.Scfld02_0        3048812 29 -  4147112 I
e caeJap4.Scaffold18213     37546 0 +   720316 C
e cb4.chrX               17028233 341 - 21540570 I
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=0.000000
s ce10.chrX               2295402 729 + 17718866  
e caePb3.Scfld02_0        3048812  29 -  4147112 I
e caeJap4.Scaffold18213     37546   0 +   720316 C
e cb4.chrX               17028233 341 - 21540570 I
e caeSp111.Scaffold576      59649  20 -   128984 I
e caeRem4.Crem_Contig233    31945  38 -   113162 I

a score=252.000000
s ce10.chrX               2296131 20 + 17718866 TCATAACTATGAACCGTCTT
s caeJap4.Scaffold18213     37546 20 +   720316 tcaaaaatgtgtaaattgtt
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3048812 29 -  4147112 I
e cb4.chrX               17028233 341 - 21540570 I
e caeSp111.Scaffold576      59649 20 -   128984 I
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=-313.000000
s ce10.chrX               2296151 10 + 17718866 GAAACCTTTC-
s caeSp111.Scaffold576      59669  9 -   128984 gaaactttt--
i caeSp111.Scaffold576   I 20 C 0
s caeJap4.Scaffold18213     37566 10 +   720316 -gatcatttta
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3048812 29 -  4147112 I
e cb4.chrX               17028233 341 - 21540570 I
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=182.000000
s ce10.chrX               2296161 2 + 17718866 TT
s caeJap4.Scaffold18213     37576 2 +   720316 tt
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3048812 29 -  4147112 I
e cb4.chrX               17028233 341 - 21540570 I
e caeSp111.Scaffold576      59678 0 -   128984 C
e caeRem4.Crem_Contig233    31945 38 -   113162 I

a score=-789.000000
s ce10.chrX               2296163 5 + 17718866 -TTGTG
s caeRem4.Crem_Contig233    31983 4 -   113162 -TTGT-
i caeRem4.Crem_Contig233 I 38 C 0
s caePb3.Scfld02_0        3048841 5 -  4147112 -TTGAG
i caePb3.Scfld02_0       I 29 C 0
s caeJap4.Scaffold18213     37578 5 +   720316 tttct-
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17028233 341 - 21540570 I
e caeSp111.Scaffold576      59678 0 -   128984 C

a score=852655.000000
s ce10.chrX               2296168 1228 + 17718866  
s cb4.chrX               17028574 1161 - 21540570  
i cb4.chrX               I 341 C 0
s caeRem4.Crem_Contig233    31987 1220 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      59678 1209 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3048846 1214 -  4147112  
i caePb3.Scfld02_0       C 0 I 19
s caeJap4.Scaffold18213     37583 1225 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=-189.000000
s ce10.chrX               2297396 27 + 17718866 tcagttggtcattagctggagagcatg
s caeJap4.Scaffold18213     38808  7 +   720316 --------------------AAAcatg
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e cb4.chrX               17029735  0 - 21540570 C
e caeSp111.Scaffold576      60887  0 -   128984 C
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=-1607.000000
s ce10.chrX               2297423 26 + 17718866 cctatagcactacgatgaccaaatgt---
s cb4.chrX               17029735  8 - 21540570 ---------------------attgttca
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      60887  7 -   128984 -------------------CGAATGT---
i caeSp111.Scaffold576   C 0 I 1
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e caeJap4.Scaffold18213     38815  0 +   720316 C
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=0.000000
s ce10.chrX               2297449 26 + 17718866 catagttagaaaactcaaaaaataat
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e caeJap4.Scaffold18213     38815  0 +   720316 C
e cb4.chrX               17029743  0 - 21540570 C
e caeSp111.Scaffold576      60894  1 -   128984 I
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=-1294.000000
s ce10.chrX               2297475 71 + 17718866 tatatatgatttttttgaaatttggaaaaatctcAGTTAGTGCCACATTTTTGTGAGTCGATCTAAAAAAC
s cb4.chrX               17029743 16 - 21540570 -------gatttttttg--------------------------cacaac----------------------
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e caeJap4.Scaffold18213     38815  0 +   720316 C
e caeSp111.Scaffold576      60894  1 -   128984 I
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=758.000000
s ce10.chrX               2297546 11 + 17718866 TTTATTTTTTC
s cb4.chrX               17029759  8 - 21540570 ---attttttc
i cb4.chrX               C 0 C 0
s caeJap4.Scaffold18213     38815  9 +   720316 tttgttttt--
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e caeSp111.Scaffold576      60894  1 -   128984 I
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=-101.000000
s ce10.chrX               2297557 51 + 17718866 CTCAAGTTTTATGGTCACCTTATGTTTCAAATATTAATATTCAACAACTGA
s caeJap4.Scaffold18213     38824 24 +   720316 --------------tcattttttgttt----tatcaacattc---------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3050060 19 -  4147112 I
e cb4.chrX               17029767  0 - 21540570 C
e caeSp111.Scaffold576      60894  1 -   128984 I
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=-3902.000000
s ce10.chrX               2297608 61 + 17718866 TTCAAACATGTGACAATGCTAAAGTTTTCCCAAAAAGTAAAAAATCCTTAACACCTTCAAT
s caePb3.Scfld02_0        3050079 14 -  4147112 ttcaaaccgGTAAT-----------------------------------------------
i caePb3.Scfld02_0       I 19 C 0
s caeJap4.Scaffold18213     38848  6 +   720316 -----------------------gctttt--------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17029767  0 - 21540570 C
e caeSp111.Scaffold576      60894  1 -   128984 I
e caeRem4.Crem_Contig233    33207  0 -   113162 C

a score=0.000000
s ce10.chrX               2297669 1 + 17718866 A
e caePb3.Scfld02_0        3050093 0 -  4147112 C
e caeJap4.Scaffold18213     38854 0 +   720316 C
e cb4.chrX               17029767 0 - 21540570 C
e caeSp111.Scaffold576      60894 1 -   128984 I
e caeRem4.Crem_Contig233    33207 0 -   113162 C

a score=-6820.000000
s ce10.chrX               2297670 41 + 17718866 CGAAACAAAAACATTGAGAGCAAGTTTCTACAAAATAATGT
s caeRem4.Crem_Contig233    33207 13 -   113162 ------CAAAAC---------------------AATACT-T
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576      60895 19 -   128984 TTAAACgaaatc---------------------aataat-t
i caeSp111.Scaffold576   I 1 C 0
s caePb3.Scfld02_0        3050093  1 -  4147112 ----------------------------------------T
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     38854  1 +   720316 ----------------------------------------t
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17029767  0 - 21540570 C

a score=359056.000000
s ce10.chrX               2297711 564 + 17718866  
s cb4.chrX               17029767 606 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    33221 544 -   113162  
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      60914 554 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3050094 543 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     38855 506 +   720316  
i caeJap4.Scaffold18213  C 0 I 1319

a score=884.000000
s ce10.chrX               2298275 7 + 17718866 ATGCGTA--
s cb4.chrX               17030373 9 - 21540570 ttgtatgtG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    33765 9 -   113162 ATGTGTGTG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      61468 7 -   128984 ATGTGTG--
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3050637 7 -  4147112 ATATGTA--
i caePb3.Scfld02_0       C 0 I 170
e caeJap4.Scaffold18213     39361 1319 +   720316 I

a score=1389.000000
s ce10.chrX               2298282 7 + 17718866 AACTCAC
s cb4.chrX               17030382 7 - 21540570 TACTCAC
i cb4.chrX               C 0 I 419
s caeRem4.Crem_Contig233    33774 5 -   113162 TACTC--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      61475 7 -   128984 TACTCAC
i caeSp111.Scaffold576   C 0 I 237
e caePb3.Scfld02_0        3050644 170 -  4147112 I
e caeJap4.Scaffold18213     39361 1319 +   720316 I

a score=706.000000
s ce10.chrX               2298289 37 + 17718866 ATCGGAAACATTTTGAAGTGAGCTACTTTTTTTAAAA
s caeRem4.Crem_Contig233    33779 30 -   113162 ACTGAA-------TGTATCGACATACTTTTCTTAAAA
i caeRem4.Crem_Contig233 C 0 I 234
e caePb3.Scfld02_0        3050644 170 -  4147112 I
e caeJap4.Scaffold18213     39361 1319 +   720316 I
e cb4.chrX               17030389 419 - 21540570 I
e caeSp111.Scaffold576      61482 237 -   128984 I

a score=0.000000
s ce10.chrX               2298326 801 + 17718866  
e caePb3.Scfld02_0        3050644 170 -  4147112 I
e caeJap4.Scaffold18213     39361 1319 +   720316 I
e cb4.chrX               17030389 419 - 21540570 I
e caeSp111.Scaffold576      61482 237 -   128984 I
e caeRem4.Crem_Contig233    33809 234 -   113162 I

a score=1082.000000
s ce10.chrX               2299127 31 + 17718866 TTTGAACTTGATCTTTATCTTCCGTTAAACA
s caePb3.Scfld02_0        3050814 31 -  4147112 TTTGATCTcgatctttgttttttttttgtcc
i caePb3.Scfld02_0       I 170 C 0
e caeJap4.Scaffold18213     39361 1319 +   720316 I
e cb4.chrX               17030389 419 - 21540570 I
e caeSp111.Scaffold576      61482 237 -   128984 I
e caeRem4.Crem_Contig233    33809 234 -   113162 I

a score=-863.000000
s ce10.chrX               2299158 17 + 17718866 --TATTGATCTCGGACAGC
s caeRem4.Crem_Contig233    34043 13 -   113162 --TATTGATATCTGG----
i caeRem4.Crem_Contig233 I 234 C 0
s caePb3.Scfld02_0        3050845 17 -  4147112 gaTAAGGCTTTCATGTA--
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     39361 1319 +   720316 I
e cb4.chrX               17030389 419 - 21540570 I
e caeSp111.Scaffold576      61482 237 -   128984 I

a score=687.000000
s ce10.chrX               2299175 51 + 17718866 GGTTCAAAATCTAGACAT-TTTCCTTT-TAACCCTGCGTTTCTCCCAGCAAAA
s caeRem4.Crem_Contig233    34056 41 -   113162 AGTTCAA----CAAAATCATTTCTCTGTTAAACCGTTgtcttttc--------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      61719 41 -   128984 Ggttcaaaatccaaaatc-tcTGTTTG-TAACCCGACgttttc----------
i caeSp111.Scaffold576   I 237 C 0
s caePb3.Scfld02_0        3050862 39 -  4147112 ggatcaaaatccaaaatg-tCGCATTG-TTACCCTGTGAAT------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     39361 1319 +   720316 I
e cb4.chrX               17030389 419 - 21540570 I

a score=2944.000000
s ce10.chrX               2299226 7 + 17718866 AAAAGTT
s cb4.chrX               17030808 7 - 21540570 AAAGTTT
i cb4.chrX               I 419 C 0
s caeRem4.Crem_Contig233    34097 6 -   113162 -aaagtt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      61760 7 -   128984 gaaagtt
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3050901 6 -  4147112 -AACATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     39361 1319 +   720316 I

a score=98730.000000
s ce10.chrX               2299233 287 + 17718866 TGACTGGTCCG-AAATGACA----AAAATC-CAGAGCAAATACAATTGCTCCTG-TGCA--CCGTCATCCATATGAGAGCTATTTTTGTCGTTTTCC--CCGGCTTGC----------------------------CGTCGTCTTGGGTTTTCGCTCTGTGCGCGGTTTCGC-----GCGAGCTGTCC---------GGAAAGCCG----TGAGTGAGCCGAAAACGCGCGGACACGCAGACCGT--GCGCATGATGACTG--CATTAC-----ATTGACCAGCTTCCGTTCCCA-TTTC----------------------GAAGTGTTCTA--TCTGGCGGAT-------AGAGTTTTCAAGACATTG-----------------------------------------------------------------------------------------TGCAATTTTT-------TTGTT
s cb4.chrX               17030815 367 - 21540570 TGATTGGTccgaaaatgaca----aaaatcgcCAAACAAATACCCCTT-------------TCGTCACCCG-----AAGCTATTTTTGTCATTCAT---TTTCTTTGCCGactttttttctcct-cctcaGCACAGTGTCGTCTTGGTTTTTCACTCTTTGCGCGGTTTT-------CCAAGCTGTCCTCCGGAAAAAGAGAGC--TCACTGAGTGAGCAACCAAAATGTGGACGCGCAGACGATCACCACATGATGTCTGTATATTGCCGAAAATTGACCGGCTTCCGTTTTCGATCGTTTTGCACTCCGTGCTCGCGCGCAATACGTTCGATTTCTGACGaaa-tttttcatggttt--------ttcaaagctgatttttttactAGAAC-------------TGTATC--------------------------------------------------AGTTTTA-------TTATT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    34103 398 -   113162 tgactGGTCCG-ATATGACA----AAAATC-TCGAGCAAATACGTTTCCCACTG-TGGAGGTCGTCATCCAT---CGAGCTATTTTCGTCATTTGT---CCGATAGGC-----TCTTTTCT---------------TGCCGTCTTGGTTTTTCACTCTCTGCGCGGTTTT-------CCAAGCTGTCC---------GGAAAGCCGTGGATGAGTGAGCAACTGAGGTGTGGACACGCAGACGAT--CCGCATGATGTCTG--TATTGC-----AATGACCGGCTTCCGTTTTCG-TCGT-----------TGCTC-TGCGCAATGCGTTCGA--TCTGACgaaa-tttt--atggttttcaagaaattgaaatctggATTCTTGATTGACACAGAAATTGATTTATGTGTTTGTCCTTTTTTACAGAGTACCGGATGTTCTAGTTTAAtgtgatattttgaaattttg-------ctttt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      61767 364 -   128984 tgacTGGTCCG-AAATTACACAAGAAGATT-GCGAGCAAATACGTTTTCGTCTG-TAGAGGTCGTCATCCAC---CAAGctatttttgtcattttcccGCCGGTTGGC-----TCGTTTCTCTCCCATCATCGTTTTGCCGTCTTGGTTTTT--CTCTGTGCGCGGGTTTCTCCCCACCGATCTGTCC---------GGAAAGCCGTGGATGAGTGAGTGACCACCGCGCGGACACGCAGACGAT--CCGCATCATGTCTG--TATTGC-----TCTGACCGGCTTCCGTTTTCG-TTCT-----------GGCTC-TTAGCAATGCGTTCCA--TCTAACGAAA-TTTG--ATGGTTTTCAAGAAAGTCAAATCTAgatttgtt--------------------------------------------------------------tatgaaaagattttcaatttta------tatgat
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3050907 359 -  4147112 TGACTGGTCCG-AAATGAC-----AAAATC-CCGAACAAATACGTTTTCTCCTG-TGGAGGTCGTCATCCAT---CGAgctatttttgtcatttctc--cCGGTTGGT-----TCCTTTCTCTC-------CGCAATGCCGTCTTGGTTTTT--CACAGTGCGCGGTTTT-------GCGAGCTGTCC---------GGAAAGCCGTGGATGAGTGAGTGACCAACGCGAAGACGCGCAGACTAT--CCGCATGATGTCTG--TATTGC-----CCTGACCGGCTTCCGTTTTCG-TCCT-----------TGCTC-TCAGCAATGCGTTCGA--TCCGACgaaattttt--atggttttcaagaaaatgaaatctagATTTGTTAGCAATAC-----------------------------------------------------GTAGGCGAAATTGATCAATATTAATAATTTTAGtt
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     40680 284 +   720316 TGGATAGATCG-AGATCATT----GAAATC-TTTTgcaaacacgttttttttggctgaagGTCGGCTCACAT---CAGTCTATTTTCGTCATTTTGC--CCGGGCCGT-----TGTTTTC----------------CTCCGCAATAGTTGTT--GCCTCCGCAGCGGTTT-------CCGAGCTGTCC---------GAAAAGCCG-------------------AGCGCGGACACGCAGCCTAT--CTCCATGCTGTCTG--TATTGC-----TCTGACCGGCTCCTGTTTTTG---GT-----------tcctt------gaaattttcaa--ac--acgaat-------cgattttttgag----tgaaaattattttttgt----------------------------------------------------------------------------taatttt--------ttgtt
i caeJap4.Scaffold18213  I 1319 I 435

a score=-47012.000000
s ce10.chrX               2299520 109 + 17718866 TGGAACTTACAACTTTGT--AAAGATTATTTTAGGTG-------------------------------------------TTTTTTTTTTAAATTTCCATATTATCAGCTTTGCTCC--ATTTTAG---------------------------------------------CAGCTGA--------------TCACTGCTTCC------------------------------------------------------------------------CTTTCTCC-------------------ATTC
s cb4.chrX               17031182  87 - 21540570 TCAGTCTCTCAGAAAGCC--AActcttgattt---tc-------------------------------------------tttttccat----ttttaatccaa------attttt---gttcTAG------------------------------------------------------------------ACCGAAATTTC-------------------------------------------------------------------------ATTCTCA-------------------TACC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    34501 193 -   113162 ATAACTTCTTCGGTTgctaaaaatattaattt---tg-------------------------------------------ttgtttcattacattttattaaaa------atattctAAGCTCTAGAATCTAACAATCAAATTTGGAAACGAACGGTCCACAGAAGTGGCATCAATTCTGTACAACTAGCTCACTGGCATTTC--------------TGGTAGATCAT-----------------------------------------------TATTCtcgttttcaatttaaatCTTTTTACC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      62131 183 -   128984 tgaatcatttttagtttt--attttatgatgC---TC-------------------------------------------TTCTAGCcttattcaataatttca------ctGATCC--G-------------------AATGATTTATCC---------------GAGCTTATCTGA--------------TTTTGGCTTTCGTTTTCTGagcttcgaaaaaattgttcgTGGGTTGGTTAGATTTGCAgtgctttttcaaaacaagagTCATGTGTTTTCT-------------------AACC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3051266 193 -  4147112 tgattcatttcaattctt--aaACGCTAATGG---TCTGAAATTTCTTGGGGGAATGTATGAAAGAGAGTGAGaccgtattttttttctgaatcttcagTGTCA------CTCTTCT--TCTCAgg---ttaatttttcaatgaagaatcCTTATTCTGATAGAAAGAGAATAatttc--------------actcaattttc-----------------aaacttgt-----------------------------------------------tATTCTCT-------------------TACC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     40964 435 +   720316 I

a score=62668.000000
s ce10.chrX               2299629 119 + 17718866 TTCCAGA---------------AAATTTCACTTAGTCTCGAGAC---TTCTTAATCTGGCAAACATATATAATAAGGA-CCATATCCGATTACCTATCCAATTACTCTTC--CGACTAC----------GAAAGCTT--CAACTATACTCGC
s cb4.chrX               17031269 141 - 21540570 TACCCG------TTTCTTCCAAGAAATTCACTTTGCACTC-GTC---TTCTAAATC-GGCaaacaataataataaataCCCATATCCGATTACCTATCCAATTACTTTTCCACGACTACAGCCTATATGGAAGCCACAACAACTACAttcac
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    34694 138 -   113162 TACCTGAGTTCTcatcttccagaaaattcattttgccTTAGGTC---TTCTTAATCGGgcaaacaataataataaatagCCATATCCGATTACCTATCCAATTACTCTTC--CGACTACAGCC------AAAGCCTT--CAACTACATTCG-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      62314 138 -   128984 TACCTGAGCTCTCATCTTcca-gaatttcattttgcaCTAAGTCTCGTTCTTAATC-GGCAAATACTAATAATAAATAGCCATATCCGATTACCTATCCAATTACTCTTC--CGACTACCGCC-------AAGGCTT--CAACTACACTCG-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3051459 136 -  4147112 TACCTGggttttcaattcaaa-gaaattcattttacGCTAGGTC---TTCATAATC-CGCAAATACTAATAATAAATAGCCATATCCGATTACCTATCCAATTACTCTTC--CGACTACAGCC------TATGGCTT--CAACTACATTCG-
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     41399 113 +   720316 ----------------TTACAAGATATT------GCCCATAGTCGCCCTCTAAATC-GGCAAACACTAATAATAA--AGCGATATCGGATTACCGATCCAATTACTCCAG--CAACTATAGCG------TTTTCTAT--CGTCTTCTC----
i caeJap4.Scaffold18213  I 435 I 16

a score=10188.000000
s ce10.chrX               2299748 22 + 17718866 CAAA-CGACCACCCCCAC---CACAA
s cb4.chrX               17031410 26 - 21540570 ttcttcttccacCCCCACTTTCTCTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    34832 21 -   113162 -----CTTCCACCCCCACTTTCTCTT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      62452 21 -   128984 -----TTTCCACCCccactttctctc
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3051595 21 -  4147112 -----CTTCCACCcccactttctctt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     41512 16 +   720316 I

a score=168729.000000
s ce10.chrX               2299770 215 + 17718866 T-----TCCACTTCATGATCGATCATCT-TGTTGCTTTTTGTCAAAATCCAGCGCCAGGGCCA--------AGTGCAC-AAAGCCGCGCACCGGTGGCGAAACAATGGATCG-GCTAGGCTCTT------CCACAGTCGTTGTGTCTTTTGG-CCTCCGTAGTGTCCACTTATGG-CGTTAAACAACTG-TTTC----GCTTATTCTGCATCTCCTCTTTTTTGC--TGAACAATATTTGCTTCCT
s cb4.chrX               17031436 213 - 21540570 CTTCATTCCACTTCATGATCGATCATCT-TGTTgctttttgtcaaaa---atccTCA--ACCG--------AGTGCACAAAAGCCGCGCACCGGTGTCGAAACAATGGATCG-GCTA-GCTCTT-CGTT-TCCAACCCGT--TGTCTTTTGGCCCTCCGTAGTGTCCACTTATGG-CGCTAAACAACTGTTTTCGCTGGCTT------------CATCTTCTTTCCGTAAGCAATATTTGTCTCTT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    34853 204 -   113162 C-----TCCACTTCATGATCGATCATCT-TGTTGCTTTTTGTCAAAATCCAGCGCCA--GCCG--------AGTGCAC-AAAGCCGCGCACCGGTGTCGAAACAATGGATCG-GCTA-GCTCTTCCCCT-TCCCAATCGT--TGTCTTTTGG-CCTCCGTAGTGTCCACTTATGG-CGCTAAACAACTgttttc----gctt------------cttcttcttgc--taaACAATATTTGTCTCTT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      62473 198 -   128984 t-----tccacttcATGATCGATCATCT-TGTTGCTTTTTGTCAAAATCC---------------------AGTGCAC-AAAGCCGCGCACCGGTGTCGAAACAATGGATCG-GCTA-GCTCTT-CCTT-TCGCAATCGT--TGTCTTTTGG-CCTCCGTAGTGTCCACTTATGG-CGCTAAACAACTGTTttc----gctt------cttctccttcttcttgc--tAAACAATATTTGTCTCTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3051616 204 -  4147112 t-----tccacttCATGATCGATCATCT-TGTTGCTTTTTGTCAAAATCCAGCGCCA--GGCA--------AGTGCAC-AAAGCCGCGCACCGGTGTCGAAACAATGGATCG-GCTA-GCTCTT-CCTTCTCCCAATCGT--TGTCTTTTGG-CCTCCGTAGTGTCCACTTATGG-CGCTAAACAACTGttttc----gctt------------cttcttcttgc--taaACAATATTTGTCTCTT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     41528 203 +   720316 -----TTCCACTTGATGATCGTTCAGCTATGTTGCGTTTTGTTAAAATCCAGAACCGCAGTCGTTCCGATCGGTGCAC-AAAACCGCACACTAAGGTCGAAACAATAGGCTGTGCTA-GCTCTT------CC-----CGT--TGTCTTTGGC-TCCCCGTCGTGTCCACTTTTGGACAGTAAACATCtgttttt----gc--------------cgttttcttgt--caaaca--atttgcctttt
i caeJap4.Scaffold18213  I 16 I 253

a score=73705.000000
s ce10.chrX               2299985 130 + 17718866 CCCACCTTCTCCGCTTCATCAATGTTTTTCTTATTTTCACTCC----TAAAAACTCAAGTGGAGATAACACGTTTTT----TGG-AGTATCGTTATGTCATACCCCC--TAGCCGTCTCGACA-TGGAATGCGGAAAAACGT
s cb4.chrX               17031649 135 - 21540570 ----CCTCCTACTCTTCATCAatgttttcacttttttcttgttcgtCCTAGAACTCAAGTGGAgataacacattttttttctggtggGATCGTTATGTCATACATTTAGCATTTGTCTAGACCTTGGAATGCGGGTAAA---
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35057 124 -   113162 ----CCTCCCACTCTTCATcaatgttttcacttttttctt-------caagaacTCAAGTGGAGATAACACGTTTTT----TAGAAGGATCGTTATGTCATACCTTT--CTTTCGTCTAGACC-TGGAATGCGGAGAATCGT
i caeRem4.Crem_Contig233 C 0 I 115
s caeSp111.Scaffold576      62671 122 -   128984 ----TCTCCTACTCTTCATCaatgttttcactttttttt--------caagaactcAAGTGGAGATAACACGTTTTT----TGG-AGGATCGTTATGTCATACATCT--TATCCGTCTAGACC-TGGAATGCGGATAAGCGt
i caeSp111.Scaffold576   C 0 I 223
s caePb3.Scfld02_0        3051820 122 -  4147112 ----CCTCCCACTCTTCATCaatgttttcactttttttt--------caagaactcaAGTGGAGATAACACGTTTTT----TGG-AGGATCGTTATGTCATACTCCT--TATCCGTCTAGACC-TGGAATGCGGAGGAGCGT
i caePb3.Scfld02_0       C 0 I 348
e caeJap4.Scaffold18213     41731 253 +   720316 I

a score=0.000000
s ce10.chrX               2300115 25 + 17718866 TTTTTGAATTAATTTTTTTTCAAAA
e caePb3.Scfld02_0        3051942 348 -  4147112 I
e caeJap4.Scaffold18213     41731 253 +   720316 I
e cb4.chrX               17031784  0 - 21540570 C
e caeSp111.Scaffold576      62793 223 -   128984 I
e caeRem4.Crem_Contig233    35181 115 -   113162 I

a score=-5365.000000
s ce10.chrX               2300140 879 + 17718866  
s cb4.chrX               17031784 650 - 21540570  
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3051942 348 -  4147112 I
e caeJap4.Scaffold18213     41731 253 +   720316 I
e caeSp111.Scaffold576      62793 223 -   128984 I
e caeRem4.Crem_Contig233    35181 115 -   113162 I

a score=-5519.000000
s ce10.chrX               2301019 123 + 17718866 -AAAACATTAATT--------TATATTA--TCCCCATAAGTTGTACTTGTCTAAAA--------------AAAATCA-CGTTCTAATTTCCAATTTGGAGCATCTACTG-TGACATTTCATATGAGTACGTTTGCCAAAAAATGTGTCTT
s cb4.chrX               17032434 124 - 21540570 CGAGAATTGAGTTCCAACTGgtgtttttcatcgaatttttttctgaatttctcaaa-----tatttttttgaaacaattcttgaaattttt---cagggatCTCCGATTGTCCTACAAAATAT-------TACAGCTAG-----------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35296 129 -   113162 -aaaatttcagtt--------tattttt--tcagtatttgtTTTAGCTCTGACAAATGGAGAGTCTTAACAGAACTA-CCTCAAAACTCTTAA-CAGAAACATCTTCCT-TCCTATTTAATAT-------attctcaagaaaaatgattt
i caeRem4.Crem_Contig233 I 115 C 0
e caePb3.Scfld02_0        3051942 348 -  4147112 I
e caeJap4.Scaffold18213     41731 253 +   720316 I
e caeSp111.Scaffold576      62793 223 -   128984 I

a score=572.000000
s ce10.chrX               2301142 17 + 17718866 AATTATATGTTGCTAAT
s cb4.chrX               17032558  8 - 21540570 ---------TTGCTACC
i cb4.chrX               C 0 I 18
s caeRem4.Crem_Contig233    35425 17 -   113162 tctcattctttacTAAT
i caeRem4.Crem_Contig233 C 0 I 4
s caePb3.Scfld02_0        3052290 17 -  4147112 AATTGTTTTTCGGTCAC
i caePb3.Scfld02_0       I 348 C 0
e caeJap4.Scaffold18213     41731 253 +   720316 I
e caeSp111.Scaffold576      62793 223 -   128984 I

a score=-1806.000000
s ce10.chrX               2301159 31 + 17718866 ----AATAAAGATGAATAT-TCTATAGTTGGGCAAA-
s caeRem4.Crem_Contig233    35446 33 -   113162 ----AGTACATTCAAATGTATCTATAATGCTGACAGC
i caeRem4.Crem_Contig233 I 4 C 0
s caePb3.Scfld02_0        3052307 37 -  4147112 AACAAATTTCTTCATTAACATCCTTGATCATGACAAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     41731 253 +   720316 I
e cb4.chrX               17032566 18 - 21540570 I
e caeSp111.Scaffold576      62793 223 -   128984 I

a score=180.000000
s ce10.chrX               2301190 1 + 17718866 T
s cb4.chrX               17032584 1 - 21540570 T
i cb4.chrX               I 18 C 0
s caeRem4.Crem_Contig233    35479 1 -   113162 T
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3052344 1 -  4147112 C
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     41731 253 +   720316 I
e caeSp111.Scaffold576      62793 223 -   128984 I

a score=25939.000000
s ce10.chrX               2301191 51 + 17718866 GATGCTTCAAGCTGATTTATGAAGTGCCGTGAGAG-TATCTTCCCTA-----TTCAA
s cb4.chrX               17032585 57 - 21540570 AAAGTTACAAACTGATTCATTAAGTGTCATAAGCGACATCATCCCCATTGATTTCAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35480 55 -   113162 GAAGTTAC-AACTGATTCATTAAGTGTCATACGAG-TGCCTTCTCTATTGAATTCAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      63016 56 -   128984 GAAGTTACAAACTGATTCATTAAGTGTCATGAGAG-TGCctcatttattcaatttga
i caeSp111.Scaffold576   I 223 C 0
s caePb3.Scfld02_0        3052345 56 -  4147112 TAAGTTACAAACTGATTCATTAAGTGTCATAAGAG-TGCCTCATTTATTCTATTCAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     41731 253 +   720316 I

a score=123841.000000
s ce10.chrX               2301242 341 + 17718866 TTGCATTCATCCA--GTGATT--TTCCCT--CATT-----CACTCTTT-----------------TCTAAC-T---ATCACTTTC--ATTC---GATCACATC--------TCCCCCCATCA---AAAACTAATTCCATTAT-CATCCTCATT-CCTTTCCTGATAT-------CTGCTAAGAATGAGAAACATTACAAGAAGAATGCAATTTGCAT-CGAAACAAGTAGTTGGTGTAGTCATACA----------------TTTCCCGGT--------------CTCATATAGGG------------------ATACTAGTTGTTAGGCCGCTGTTGCC-CA-AGCTTATCTCATTTCTTTGAGTGACCTCAATTTTGACTGTCCATCTATACATAAGAAATGCAAATATTTGTTGTTTATTTCAAAAAGCTCTCTCTC-----TGTGCTTTT-
s cb4.chrX               17032642 350 - 21540570 TTGCCTACTTCCAAGAT------CTTCCA-----------CTCCCTCTCAatgcatttttttcactttctcatcagatcactttctttttc---attcacttcttccttctATTATCCATCAAACAAAACCTATTCCATCATCAAGCATCAT---CATTCTTGATAGCTGCTG-CTGCTGGA-ATGCTGCTAGCTGCC-TAGGATTGTAATTTGCATCCGAAACAAGAAGT------GTTCATAT------------------TGCGAGGAGCGGGA-----------ATAT----------------------ATACTAGTTGTTA--------GCGTG-TGTGGCTTATCTCGTTTCTTTGAATGACCTCGATTTTGACTGACCATC--TACATAAGAAATGCAAATATTTGTTGTTTATACCG----------CTTTCTCTACAGttcttt-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35535 321 -   113162 TTGCATTCTTACATGAT------TTCCC--------------------------------TTCATTCACTC-TCAGATCACTTTC--ATTC---Gatcatctc--------attttccatca---aaaaccaatCCCATCCT-GATCATCATT-CCATTCCTGATAGCTGAAGAATGCCGAAGATGAGAAAAGTCGCT---GGGATGTAATTTGCAT-CGAAACAAGTAGT-----CGTTCGGTT------------------TGCCTTGTAAGCGA--------CTCATATTGGG------------------ATACAAGTTGTTA-------TTCGTA-CA-AGCTTATCTCAATTCTTTGAATGACCTCAATTTCGACTGACCGTC--TACATAAGAAATGCAAATATTTGTTGTTTATTTCA----------TCTCCTT--Ccactcttt-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      63072 336 -   128984 ttGCGTTTATTCAAGATGATTCCTCCCCT--CCTTC----CACCCTCTCacttca-----ctttctttttc-tcagatCACTTTC--ATTC---GATCATCTC-----------CTCcatca---aaaaccaattcCATCAT-------CATTCCCATTCCTGATAGCCAGAA-TGCctgaagatgagaaaagtCGCG---AGGATGTAATTTGCAT-CGAAACAAGTAGT-----TATTCTGTC------------------TTCGTTGTAAGCGA--------CTCATATTGGG------------------ATACTAGTTGTTA-------GTCGTC-CA-AGCTTATCTCGTTTCTTTGATTGACCTCAATTTTGATTGACCATC--TACATAAGAAATGCAAATATTTGTTGTTTATTTCA----------TCTT-----TCGGccttt-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3052401 320 -  4147112 TCGCATTCATTCAAGATGATT--TTCCCT--catt-----cactctct-----------------tttttc-tcagatcactttc--attccatcatcatctt-----------ctccatca---aaaaccaattccatcat-------catt-ccattccTGATAGCCCGAA-TGCCTAGAGATGAGAA-----------TGAATGTAATTTGCAT-CGAAACAAGTAGT---AGTAGACTGTCG----------------TTTTCTTGTAAGCGA--------CTCATATTGGG------------------ATACTACTTGTTA-------TTCGTCACA-AGCTTATCTCGTTTCTTTGATTGACCTCAATTTTGGCTGACCATC--TACATAAGAAATGCAAATATTTGTTGTTTATTTCA----------TCTC-----TCGGCcttt-
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     41984 348 +   720316 TTACGTT-ATTCAAGTGGCTT--TTCTTTTCCATTCATAACTTCTCTT------------CCCCATCACTC-CCAGATCACTTTC--TCTC---AATCAACGT-----------CCCCATCA---AAAACCAATC--------------CATT-------CTGATAG-------ATGCCAAGGATGAGAAAAGTCGGA---AGGGGGCAATTTGCAT-CGAAACAAGTAGT-----CAGTCATTCAATGTTTCTCCTCCTTTTTCCCTTACAACAAAGTTTTCCTGTCGTATCGAATATGGCGACTCTGATCACATACTAGTTGT---------GTTGTC-CA-AGCTTATCTCGTTTC-TTGATTGACCTCAATTT----TGTTCATG--TACATGAGAAATACAAATATTTGTTGTTTATTTCA----------CTTT-------GTTCTTTT
i caeJap4.Scaffold18213  I 253 I 91

a score=2522.000000
s ce10.chrX               2301583 12 + 17718866 GTTCCCCGTTCC------
s cb4.chrX               17032992 18 - 21540570 gttcattttttcaaatct
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35856 15 -   113162 gttttttttttc---tct
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      63408 12 -   128984 gttctctttttc------
i caeSp111.Scaffold576   C 0 I 16
s caePb3.Scfld02_0        3052721 12 -  4147112 gctctctttttt------
i caePb3.Scfld02_0       C 0 I 22
e caeJap4.Scaffold18213     42332 91 +   720316 I

a score=-1803.000000
s ce10.chrX               2301595 8 + 17718866 AGCTGGGC-
s cb4.chrX               17033010 8 - 21540570 agctCTTC-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35871 8 -   113162 tgatcatt-
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3052755 8 -  4147112 -AAccgttc
i caePb3.Scfld02_0       I 22 C 0
e caeJap4.Scaffold18213     42332 91 +   720316 I
e caeSp111.Scaffold576      63420 16 -   128984 I

a score=-25267.000000
s ce10.chrX               2301603 61 + 17718866 -------------------------------------------------------T-------------TGCTGTCGTGTATTTT----TTTTTGTCAATTCATCGGGTTTTTTTAGTACAATTAACTGAAGC
s cb4.chrX               17033018 43 - 21540570 TTATTTTCACT-------GTGAGCTTAAA--------------------------A-------------TGCTACTGGCAATTTC--TATT------------------------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    35879 84 -   113162 cagtttttgctcctGTTCGTATACTAAAAACGTATAATCCTTTTTTAGACAGCACA-------------TGAATAtgtccatttt--tatttttttaaa----------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      63436 85 -   128984 ------TTGCTCCcgttctatttcaaaaa-----------------------aaca-------------tgtattgttcaatttttccatttttccagattctgAG------TCCGTTAccattcattgaatt
i caeSp111.Scaffold576   I 16 I 80
s caePb3.Scfld02_0        3052763 71 -  4147112 ------------------tttttcaaaaa-----------------------aaaaaaactggaagctcaaaattcttgaacttt----tttttccaaatc---------------gtACAATTTATT--CTT
i caePb3.Scfld02_0       C 0 I 9
e caeJap4.Scaffold18213     42332 91 +   720316 I

a score=0.000000
s ce10.chrX               2301664 7 + 17718866 AATGGGG
e caePb3.Scfld02_0        3052834 9 -  4147112 I
e caeJap4.Scaffold18213     42332 91 +   720316 I
e cb4.chrX               17033061 0 - 21540570 C
e caeSp111.Scaffold576      63521 80 -   128984 I
e caeRem4.Crem_Contig233    35963 0 -   113162 C

a score=-3842.000000
s ce10.chrX               2301671 22 + 17718866 CTGATAAAATTTCAGCACTTCA------
s cb4.chrX               17033061 20 - 21540570 --GATGCTATTACAGTATTTCG------
i cb4.chrX               C 0 I 21
s caeRem4.Crem_Contig233    35963 20 -   113162 --gttagtCTGACATAAgttca------
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3052843 19 -  4147112 ---CTtgtgtttgaaaagttta------
i caePb3.Scfld02_0       I 9 I 13
s caeJap4.Scaffold18213     42423 20 +   720316 --------CTAACAAATTTTCATTGCCC
i caeJap4.Scaffold18213  I 91 C 0
e caeSp111.Scaffold576      63521 80 -   128984 I

a score=-3001.000000
s ce10.chrX               2301693 22 + 17718866 GTTTTTT----TTTTAATTTGACATA--------
s caeRem4.Crem_Contig233    35983 15 -   113162 -----------tttaaaatttctaaa--------
i caeRem4.Crem_Contig233 C 0 I 3
s caePb3.Scfld02_0        3052875 20 -  4147112 --gttTC----CTGTAGATCCCTAGA--------
i caePb3.Scfld02_0       I 13 I 1
s caeJap4.Scaffold18213     42443 34 +   720316 GTTTTTCCCTTCTCTGAATGTttattttgtcttt
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17033081 21 - 21540570 I
e caeSp111.Scaffold576      63521 80 -   128984 I

a score=-11935.000000
s ce10.chrX               2301715 37 + 17718866 TTGCAATGTGAATGTGA----TATCCCTTATTGTAAT----------------------GAAC
s cb4.chrX               17033102 61 - 21540570 tttcaaaatgagcgtTAAA--CATCGATTTTTGTCATCAGAAACAAATTTCTAAATAAAAATC
i cb4.chrX               I 21 I 10
s caeRem4.Crem_Contig233    36001 31 -   113162 --ttaa----ATCCTCAAA--TAGTCCCTCTTATTGT------------------------TT
i caeRem4.Crem_Contig233 I 3 I 10
s caePb3.Scfld02_0        3052896 31 -  4147112 ---------------------TATTATTCTTTgtagt-----------tcttcaaaaatgatc
i caePb3.Scfld02_0       I 1 I 1
s caeJap4.Scaffold18213     42477 49 +   720316 ------ttttttctttaaatttggTACTTCTTTTCTT--------GCGTCTTTCCGTATGTTC
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      63521 80 -   128984 I

a score=241289.000000
s ce10.chrX               2301752 479 + 17718866  
s cb4.chrX               17033173 435 - 21540570  
i cb4.chrX               I 10 I 4
s caeRem4.Crem_Contig233    36042 448 -   113162  
i caeRem4.Crem_Contig233 I 10 I 386
s caeSp111.Scaffold576      63601 449 -   128984  
i caeSp111.Scaffold576   I 80 I 12
s caePb3.Scfld02_0        3052928 434 -  4147112  
i caePb3.Scfld02_0       I 1 I 336
s caeJap4.Scaffold18213     42526 378 +   720316  
i caeJap4.Scaffold18213  C 0 I 128

a score=1811.000000
s ce10.chrX               2302231 107 + 17718866 -TTGA------GTACATTTGCTCAGCTATGTAGCTCCCA-----ACTTT---TACTGAAT--------------------------ACCATATGTTCTTTTTGTAGCGC--TGTACTCATTTGAAGCGTTTCTTATCTTTCTTTCTATCT
s cb4.chrX               17033612 126 - 21540570 -TTGACTTTTGACTCGCATGTATGAACATGTAGATCGGAAGGTCATGTT---AGCTGAAT-------TCTCATTCACACGGCGTCTACCATATGTTCACATTA--------CCTTCATATTTGAGACTGTTCTTATCTGATTTTA-----
i cb4.chrX               I 4 C 0
s caeSp111.Scaffold576      64062 141 -   128984 TCTGG---TAGAAACGCTTGTATG-ACATGCAGATCAGAAGGTCACTTTCTACTTTGAATATTACCATCTTCTTCACA-----TCTACCATATGTTCTCTTTATTGGTTTCCATTCCCATTTGTGACATCTCTTATCTAATGTTCTATCT
i caeSp111.Scaffold576   I 12 I 77
e caePb3.Scfld02_0        3053362 336 -  4147112 I
e caeJap4.Scaffold18213     42904 128 +   720316 I
e caeRem4.Crem_Contig233    36490 386 -   113162 I

a score=-3249.000000
s ce10.chrX               2302338 620 + 17718866  
s cb4.chrX               17033738 539 - 21540570  
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3053362 336 -  4147112 I
e caeJap4.Scaffold18213     42904 128 +   720316 I
e caeSp111.Scaffold576      64203  77 -   128984 I
e caeRem4.Crem_Contig233    36490 386 -   113162 I

a score=-2085.000000
s ce10.chrX               2302958 108 + 17718866 GCCTTCAAGTATTTGAAAGCA---CACGTTTTTATTGGTTAATTTTTCTTTGAATCTT---TGAAACTTGAATCGTTTTGAATTTTATAA-------AAGATATTCCTTAACGAAAATCAG
s cb4.chrX               17034277  96 - 21540570 gacttctgatttttttaagc----------ttttctggtaatttcaatgtttcatctc---ccgtattt---ttcttttcattttcacaagcagaaaaaaaaactc---------aaacag
i cb4.chrX               C 0 I 4
s caeJap4.Scaffold18213     43032 102 +   720316 GTTTTCAAGCAACCAAAAAcaatttacagttttttttttaaatttttttttaattttcagattaaAGTTCAAACTTTTC---TGTTAAAA-------AAGTGGCTC---------GATGAA
i caeJap4.Scaffold18213  I 128 C 0
e caePb3.Scfld02_0        3053362 336 -  4147112 I
e caeSp111.Scaffold576      64203  77 -   128984 I
e caeRem4.Crem_Contig233    36490 386 -   113162 I

a score=476.000000
s ce10.chrX               2303066 2 + 17718866 TT
s cb4.chrX               17034377 2 - 21540570 CA
i cb4.chrX               I 4 C 0
s caeRem4.Crem_Contig233    36876 2 -   113162 tt
i caeRem4.Crem_Contig233 I 386 C 0
s caePb3.Scfld02_0        3053698 2 -  4147112 tt
i caePb3.Scfld02_0       I 336 C 0
s caeJap4.Scaffold18213     43134 2 +   720316 TT
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      64203 77 -   128984 I

a score=600514.000000
s ce10.chrX               2303068 797 + 17718866  
s cb4.chrX               17034379 801 - 21540570  
i cb4.chrX               C 0 I 41
s caeRem4.Crem_Contig233    36878 811 -   113162  
i caeRem4.Crem_Contig233 C 0 I 41
s caeSp111.Scaffold576      64280 801 -   128984  
i caeSp111.Scaffold576   I 77 I 34
s caePb3.Scfld02_0        3053700 783 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     43136 770 +   720316  
i caeJap4.Scaffold18213  C 0 I 47

a score=-1353.000000
s ce10.chrX               2303865 13 + 17718866 TCGTTTTTTAGAC---
s cb4.chrX               17035221 13 - 21540570 ---TAGTccagtggaa
i cb4.chrX               I 41 C 0
s caePb3.Scfld02_0        3054483  9 -  4147112 ----AATTTAGac---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=403.000000
s ce10.chrX               2303878 57 + 17718866 AAGGAGCATTTTTT-------------------CACaa------aaattatttaaaaaaa------------aaaCAGAAAAAGCCTCTCCAGT
s cb4.chrX               17035234 94 - 21540570 aattttcaatttttaattcctgaaaacgtattccagaacattttaaattttttaaaaaactctgaTTATATCGAACATAAAAAACCTATCAAGT
i cb4.chrX               C 0 I 187
e caePb3.Scfld02_0        3054492  0 -  4147112 C
e caeJap4.Scaffold18213     43906 47 +   720316 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=0.000000
s ce10.chrX               2303935 78 + 17718866 AGCATAACAATTAGAATTTTTACTTCGTAACTAAAATCTAAATTTTCTGAAAAATTGTCAAGTTTTCTTATTAAAAGT
e caePb3.Scfld02_0        3054492  0 -  4147112 C
e caeJap4.Scaffold18213     43906 47 +   720316 I
e cb4.chrX               17035328 187 - 21540570 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=-2947.000000
s ce10.chrX               2304013 316 + 17718866 CCCAAGTTTTACTTTAAAATTTTCAAG----------TTTAACCAATAAAATTCTAATTTT-------------------------TTCAGCCATTTTCCAACAATTTCCACCCAAAAA---ATATTTTCCATAAACTTTAGAACTTAAAACCTGAAGT------ATTTC----CACTTGAAAACTCCGAAAACTCTCAGCC-----AATT-TTTATCTTGA--------AAATTCTGAATTTTCTGCAATTTT------------------CAGTTACTTTTCACGCCAAAAT------------CACACTTTTACCAT------------------------------------CTAAAAGCGC-----TCAA------------AATTTGAAAACATT------GTTTTTTTTTACTTTTTAAAG-------CAAACACTCTCATCTTTAAACTAAACTACAACAACAAAT
s cb4.chrX               17035515 461 - 21540570 cccgaactgtcccccgaaatttttgatgtctcgcctcctttaacaacaaaatgcaaaaaatgcaaaaatcaagattaaaataaaaGTTGCGTCCCTTTATAACCGCTT--ACCCTAAAACCTATATATAAGAAGAACTCTCTAATATTTAACTTTAAGttccattatctcggttcttttgaaatatataaaaacacttaaattgataaattatttatcataatatcaccaaaattatctgtttactgattttttaaatatatctTAAAAGGACAGatataattgaactcaaagtgcatgtGTGGGGAAAGCTTCTatcagagcaaatacggtCTGTCGTCTGTAACCAACAAACAGCCAAAAATGCAAATATCAACACTAAAATAGGAGTTTAAAAACGCTTATCTcgtttttcagggttttttacagaaattttcaattacctATATCTCTAATTTTG--TAC---------t
i cb4.chrX               I 187 C 0
e caePb3.Scfld02_0        3054492   0 -  4147112 C
e caeJap4.Scaffold18213     43906  47 +   720316 I
e caeSp111.Scaffold576      65081  34 -   128984 I
e caeRem4.Crem_Contig233    37689  41 -   113162 I

a score=450.000000
s ce10.chrX               2304329 25 + 17718866 -TTTTTTTTGGAGTTCCAGACTACAT
s cb4.chrX               17035976 25 - 21540570 -ctttttatgaaatttaaggagagat
i cb4.chrX               C 0 I 38
s caePb3.Scfld02_0        3054492 15 -  4147112 ttcttttctgaattt-----------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=329.000000
s ce10.chrX               2304354 29 + 17718866 AGTAAATAAAAAAACGAAAATTTTGAG-------CA
s caePb3.Scfld02_0        3054507 36 -  4147112 gttcaaccaaaaatttaAACTTCTGAGAATTCAACA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I
e cb4.chrX               17036001 38 - 21540570 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=-1632.000000
s ce10.chrX               2304383  6 + 17718866 ATT----TTC---
s cb4.chrX               17036039  6 - 21540570 -------ATCATC
i cb4.chrX               I 38 C 0
s caePb3.Scfld02_0        3054543 11 -  4147112 AATAGCTTTCA--
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I
e caeSp111.Scaffold576      65081 34 -   128984 I
e caeRem4.Crem_Contig233    37689 41 -   113162 I

a score=-561.000000
s ce10.chrX               2304389 2 + 17718866 TT-
s cb4.chrX               17036045 2 - 21540570 TT-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    37730 2 -   113162 tt-
i caeRem4.Crem_Contig233 I 41 C 0
s caePb3.Scfld02_0        3054554 2 -  4147112 -TG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I
e caeSp111.Scaffold576      65081 34 -   128984 I

a score=910.000000
s ce10.chrX               2304391 1 + 17718866 T
s cb4.chrX               17036047 1 - 21540570 T
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    37732 1 -   113162 t
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      65115 1 -   128984 T
i caeSp111.Scaffold576   I 34 C 0
s caePb3.Scfld02_0        3054556 1 -  4147112 T
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     43906 47 +   720316 I

a score=380638.000000
s ce10.chrX               2304392 445 + 17718866 TTCAGTGGCGAATCTGGTGCAGGAAAAACTGAATCCACAAAACTGGTCCTCCAGTTTTTGGCAACAATCAGTGGACAACACAGCTGGATCGAACAGCAAGTCCTAGAAGCAAATCCGGTTCTCGAAGCATTTGGTAATGCGAAGACCATCCGCAATGATAACTCGTCTCGATTTGGAAAATACATTGATGTACATTTTAACGAGAGTGGATCTATTGAAGGTTT---GATTG------ACAAGTGGGAACA--------TATT--GAGATGTATTGTT--TTAGGAGCGAAAATTGAACAATATTTGTTGGAGAAATCGAGAATTGTTACTCAATCAGAGAATGAGAGAAATTACCATATATTTTATTGTTTGTTGGCAGGACTGTCCAGAGAAGAAAAGTCGGAGCTAGAATTAGGAACAGCTGCTGATTATTATTATTTGATTCAAGTA--------AGCTTTATAAAGGTT
s cb4.chrX               17036048 460 - 21540570 TACAGTGGTGAATCTGGCGCCGGAAAGACCGAATCCACAAAACTCGTCCTCCAGTTTTTGGCAACAATTAGTGGACAGCATAGTTGGATCGAACAGCAAGTCCTCGAAGCGAATCCAGTTCTCGAAGCGTTTGGTAATGCGAAGACAATCCGCAATGATAACTCGTCCCGGTTTGGAAAGTACATTGATGTACATTTCAATGAGAGTGGTTCTATAGAAGGTTT-GGGGATGAAAAATGTCGGaatgaaagttgaa---aaat-aaaaatt---------ccaggagCCAAAATCGAGCAGTACCTTCTGGAGAAGTCCAGAATCGTTACacagtctgaaaatgagagaaactATCACATTTTCTACTGTTTACTGGCAGGGCTttcaaaagaagagaagatggAACTAGAGTTGGGTACCGCTGCAGACTACTATTATCTGATTCAGGTACCTCGTAAAATTAtataagaatt
i cb4.chrX               C 0 I 11
s caeRem4.Crem_Contig233    37733 450 -   113162 ttcagtggtgAATCGGGTGCCGGAAAGACAGAATCCACAAAACTTGTCCTCCAGTTCTTGGCAACAATTAGTGGACAGCATAGTTGGATTGAACAACAAGTCCTTGAAGCAAATCCAGTTCTTGAGGCATTTGGTAATGCGAAGACAATCCGCAATGATAACTCGTCTCGCTTTGGAAAGTACATAGATGTACATTTCAATGAAAGTGGATCTATCGAGGGTTT-GTGATTG------GTTGTGGTTTATGTCTTattgaaat-agaaatt----------caGGAGCCAAGATTGAGCAATATCTACTGGAAAAGTCAAGAATCGTCACacaatcagaaaatgaaagaaactaTCATATTTTCTATTGCCTGTTGGCTGGTTTATCCAAAGACGAAAAAGCAGAACTAGAGTTGGGAACTGCTGCGGACTACTACTACTTGATTCAAGTG------AGGGTTTTAGCTACTTT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      65116 431 -   128984 TCTAGTGGAGAATCTGGTGCCGGAAAAACAGAGTCCACAAAACTCGTTCTACAATTCTTGGCAACAATTAGTGGGCAACATAGCTGGATCGAACAACAAGTCCTTGAGGCTAATCCAGTTCTTGAAGCATTTGGTAATGCGAAGACAATCCGCAATGATAACTCGTCTCGATTCGGAAAGTACATCGATGTTCATTTCAATGAGAGTGGATCTATAGAAGGTTT-----GTG------TTCAAGGGAAAAG--------AGTT-GTTGATTTTATGTCTTTTAGGTGCCAAGATAGAGCAGTATTTACTTGAAAAGTCGAGAATCGTGACCCAATCTGAGAATGAAAGGAACTATCACATTTTCTACTGTTTATTGGCTGGATtatcaaaagaagagaagtttGAACTGGAATTGGGAACAGCTGCTGATTATTATTACCTAATCCAGGTA-----------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3054557 445 -  4147112 TTTAGTGGTGAATCTGGTGCCGGCAAAACCGAATCCACCAAACTCGTCCTCCAGTTTTTGGCAACAATTAGTGGACAACACAGCTGGATCGAACAACAAGTTCTTGAGGCGAATCCAGTTCTAGAGGCGTTTGGTAATGCAAAGACAATACGCAATGATAACTCGTCCCGGTTCGGAAAGTACATTGATGTACATTTCAATGAAAGTGGATCTATAGAAGGTTTTGTGAATG------TTTGGGAATAATG--------AATT--CACATCTTTTATTATTTAGGGGCtaaaattgaacaatatttGCTCGAGAAATCAAGGATCGTCactcaatctgaaaatgaaagaaactaTCATATTTTCTATTGCTTGTTGGCCGGTTTgtcgaaagaagaaaagatggagCTGGAATTGGGGTCAGCGGCGGATTATTACTACCTTATCCAGGTA-------------TAAAGAGATT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     43953 446 +   720316 TTTAGTGGAGAATCTGGTGCCGGAAAGACCGAATCCACAAAACTTGTCCTCCAGTTTTTGGCAACAATCAGTGGGCAACATAGCTGGATTGAACAACAAGTTCTTGAAGCAAATCCAGTTCTCGAAGCGTTTGGTAATGCAAAAACAATCCGCAATGATAACTCGTCTCGTTTCGGAAAGTACATTGATGTTCACTTCAATGAGAGTGGATCAATCGAAGGTAG-AGAAAAA------ATAACGGAATATT--------AATGGAGAAATGTTGCATTT-GCAGGAGCCAAAATTGAACAATACTTGCTCGAAAAATCTCGAATCGTCACACAATCTGAAAATGAGAGAAACTATCATGTTTTCTATTGTTTGTTGGCGGGTCttacaaaagaagaaaaacttGAACTGGAACTTGGGACAGCGGCTGATTACTATTATCTAATTCaggta-----------aaaaaagaaat-
i caeJap4.Scaffold18213  I 47 C 0

a score=-152.000000
s ce10.chrX               2304837 17 + 17718866 GACTCGTCGACATCAAT
s caeRem4.Crem_Contig233    38183 13 -   113162 GCCT----ATTATCAAT
i caeRem4.Crem_Contig233 C 0 I 4
s caeSp111.Scaffold576      65547  9 -   128984 --------ATCATCAAA
i caeSp111.Scaffold576   C 0 I 12
s caePb3.Scfld02_0        3055002  9 -  4147112 --------ATCAGCGAA
i caePb3.Scfld02_0       C 0 I 12
s caeJap4.Scaffold18213     44399 15 +   720316 gcttTG--TCCGTTAAA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17036508 11 - 21540570 I

a score=1561455.000000
s ce10.chrX               2304854 1872 + 17718866  
s cb4.chrX               17036519 1940 - 21540570  
i cb4.chrX               I 11 C 0
s caeRem4.Crem_Contig233    38200 1930 -   113162  
i caeRem4.Crem_Contig233 I 4 C 0
s caeSp111.Scaffold576      65568 1937 -   128984  
i caeSp111.Scaffold576   I 12 I 32
s caePb3.Scfld02_0        3055023 1947 -  4147112  
i caePb3.Scfld02_0       I 12 I 37
s caeJap4.Scaffold18213     44414 1885 +   720316  
i caeJap4.Scaffold18213  C 0 I 78

a score=60.000000
s ce10.chrX               2306726 2 + 17718866 TT
s cb4.chrX               17038459 2 - 21540570 CT
i cb4.chrX               C 0 I 745
e caePb3.Scfld02_0        3056970 37 -  4147112 I
e caeJap4.Scaffold18213     46299 78 +   720316 I
e caeSp111.Scaffold576      67505 32 -   128984 I
e caeRem4.Crem_Contig233    40130 0 -   113162 C

a score=492.000000
s ce10.chrX               2306728 13 + 17718866 AGGCAATTTATGT
s caeRem4.Crem_Contig233    40130 11 -   113162 --AAAATTTATAT
i caeRem4.Crem_Contig233 C 0 I 41
e caePb3.Scfld02_0        3056970 37 -  4147112 I
e caeJap4.Scaffold18213     46299 78 +   720316 I
e cb4.chrX               17038461 745 - 21540570 I
e caeSp111.Scaffold576      67505 32 -   128984 I

a score=0.000000
s ce10.chrX               2306741 1211 + 17718866  
e caePb3.Scfld02_0        3056970   37 -  4147112 I
e caeJap4.Scaffold18213     46299   78 +   720316 I
e cb4.chrX               17038461  745 - 21540570 I
e caeSp111.Scaffold576      67505   32 -   128984 I
e caeRem4.Crem_Contig233    40141   41 -   113162 I

a score=252.000000
s ce10.chrX               2307952 21 + 17718866 AAAACACAAAAGTGAATACCT
s caeRem4.Crem_Contig233    40182 20 -   113162 aaataaaaaaagcgTATTCC-
i caeRem4.Crem_Contig233 I 41 C 0
e caePb3.Scfld02_0        3056970 37 -  4147112 I
e caeJap4.Scaffold18213     46299 78 +   720316 I
e cb4.chrX               17038461 745 - 21540570 I
e caeSp111.Scaffold576      67505 32 -   128984 I

a score=-57.000000
s ce10.chrX               2307973 10 + 17718866 AAAATACCTG
s caeRem4.Crem_Contig233    40202  9 -   113162 AAATTCatt-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      67537 10 -   128984 aaaatattta
i caeSp111.Scaffold576   I 32 C 0
e caePb3.Scfld02_0        3056970 37 -  4147112 I
e caeJap4.Scaffold18213     46299 78 +   720316 I
e cb4.chrX               17038461 745 - 21540570 I

a score=819.000000
s ce10.chrX               2307983 3 + 17718866 ATT
s caeRem4.Crem_Contig233    40211 3 -   113162 att
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3057007 3 -  4147112 att
i caePb3.Scfld02_0       I 37 C 0
e caeJap4.Scaffold18213     46299 78 +   720316 I
e cb4.chrX               17038461 745 - 21540570 I
e caeSp111.Scaffold576      67547 0 -   128984 C

a score=-2906.000000
s ce10.chrX               2307986 4 + 17718866 T----CTA
s cb4.chrX               17039206 4 - 21540570 t----ttg
i cb4.chrX               I 745 C 0
s caeRem4.Crem_Contig233    40214 1 -   113162 -------g
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      67547 3 -   128984 -----atc
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057010 8 -  4147112 tccaaata
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     46299 78 +   720316 I

a score=123485.000000
s ce10.chrX               2307990 261 + 17718866 -A--AATATTCAGTTCGAATTGTTAGATGGGAGAAACTCGAAGGTAACGTTGAAAATGTTGTGCTAGTTGTGTG----CATTCTATGG------TTCTTCTCTAC--TGAATTTTTTTTTTCGG---GAGGTGCTTTTACTTCTGAATTAACTGTGTATT---------------TTCAGGTTGGTCATTTGTTCGACTTCTTGCCATCTGACGGGAAAGATTCTGGGAACGAAAATGATAGTGCGGATAGCAGCAGACGTGGATCCTATTCTAGACTTCATGT-------AAGGAAATTA---------
s cb4.chrX               17039210 273 - 21540570 -a--aa-ttttagtcCGAATTACTGGATGGAAGAAACTCGAAGGTATTTTT--TGATGTTGTTATTGTCGGT--------GTCTATGGTGGTTATTAGCCTCTATTCTTACAATTTTCATTTCG---GGATGGGATTC----CTAAAAcctcaaaaacctgaaaa-------cctTTCAGGTCTCCCATTTGTTCGACTTCTTGCCATCTGATGGAAAAGACTCTGGAAACGAGAACGACAGCACGGATAGTAGCAGAAGAGGATCTTATTCCAGGCTCCATGTAAgcgaaaagtgtgaaa---------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40215 263 -   113162 -aataa-atttaGTTCGAACTGTTGAATGGAAGGAACTCAAAGGTAATGTTGAGAATGTTGTGTTGGTTGCTTG----AATTCTGTGGT-----CTCTTCtctat--ttgatattttctttggAAACGGATCGATTTA----CTGAactatcagattttt--------------tttcaggttggACATTTGTTTGACTTCTTGCCATCTGACGGAaaagattctggaaatgaaaatgacagtACTGATAGTAGCAGACGTGGATCTTATTCGAAACTTCATGT-------GAGTGTAGAA---------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      67550 267 -   128984 -a--AA-GTTTAGCTCGAACTTCTGGATGGGAGAAACTCGAAGGTAATGTTGAAAGTGTTGTGTTGGTTGTGTG----AACTCTGTGGgattgtttcttctctttcattcataTTTCTTCG------GGAACATTTTTCCAACTGTTATaacaaaatagt-------------ttttcaggTCAGTGTTTTGTTCGATTTCTTGCCATCGGATGGAAAAGACtctggaaatgaaaacgatAGCGCGGACAGTAGCAGACGCGGATCATACTCCAGACTTCATGT-------GAGTATAATA---------
i caeSp111.Scaffold576   C 0 I 7
s caePb3.Scfld02_0        3057018 265 -  4147112 -a--aa-atttagttCGAACTTCTGGATGGGAGAAACTCGAAGGTAACGTTTGAAATGTTGTGCTGGTTGTGTG---TTTTTCTGTGGGATAGTTTCTATTCTATCTTTGATATTTTC---------GggacattttctttttttggttttcaatgtTGA-------------ATTTCAGGTTGGTCATTTGTTTGACTTCTTGCCTTCGGATGGCAAAGATTCTGGGAACGAGAATGACAGTACGGACAGTAGCAGACGTGGATCATATTCCAAGTTGCACGT-------TAGTTATCTA---------
i caePb3.Scfld02_0       C 0 I 26
s caeJap4.Scaffold18213     46377 280 +   720316 AA--AA-ATTTAGTGCGAGTTACTGGATGGCAGAAATTCGAAGGTAAAGTTGAGAATGTTGTGAGCTCTCTGTGATATGTATCTGTGGGAAATACT----TCTATtcggaatatt------------g----atttttcttattGGGTTTTAAAAATCCTGGAAAACTTTGGTGTTTTAGGTTGGCCACCTCTTCGATTTTCTTCCGTCCGATGCGAAAGACTCGGGCAATGAAAATGATAGCACCGATAGCAGCCGAAGAGGTTCTTTCACGAGACATCATGT-------TAGTTGTACAAATTTATAA
i caeJap4.Scaffold18213  I 78 C 0

a score=-4795.000000
s ce10.chrX               2308251 26 + 17718866 ATTTCAGTTAAGCTTGTAATTATTTT
s cb4.chrX               17039483 23 - 21540570 --atttgaaaaaccaaagcAAAAAT-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40478 24 -   113162 --TTCTAATAGATTGATGCCAACATT
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      67824 18 -   128984 ATATCAAATAAATTTGTA--------
i caeSp111.Scaffold576   I 7 C 0
s caeJap4.Scaffold18213     46657 20 +   720316 ATTGTAATTGAATATGTGAA------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3057283 26 -  4147112 I

a score=249033.000000
s ce10.chrX               2308277 282 + 17718866 ATTTTAGACATCTCCTGTAATGCCACCAGCAAACATCCCAAGAGTTGACTCGTACGTAGATGAAGATCTCAGTAAATATCAATTCGGAAAGTACGCGGCAACATTCTTCCAAGCTCAAGCCACTGCGACTCATGTTAAGAAGCCATTGAAAACTGCGCTTCTCACCCACACCGAGCCAAGTGCACAACTTGCGGCTTTGACCGCATGGACCACAATATTACGGTTTATGGGAGACTTGGCTGATGTCAAACCAGGTTCCACGAATGGGTCAGAAGTTTATGT
s cb4.chrX               17039506 281 - 21540570 -GTTCAGCCATCCCCTGTCATGCCACCTACCAACATTCCACGTGTGGACTCTTTTATTGATGAGGACTTGAGCAAATTCCAATTTGGAAAGTATGCAGCGACCTTTTTCCAAGCGCAAGCAACAGCTACGCATATCAAGAAACCAATTAAAACTGCATTGCTCACTCATACGGAGCCAAGTGCACAGCTTGCAGCATTGGCATCATGGACAACGATTCTTCGATTCATGGGAGATCTTTCAGATGTGAAACCAGGCTCAACAAATGGGTCAGAGATTTATGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40504 282 -   113162 ATTTCAGCCGTCTCCTGTCATGCCATCAACTAATATTCCACGTATTGACTCTTTCATTGATGAAGACCTTAGCAAATTCCAATTCGGAAAGTATGCAGCTACATTCTTCCAAGCTCAAGCCACTGCCACGCATATCAAGAAACCTATCAAGACTGCACTTCTCTCACACACAGAACCAAGTGCCCAACTTGCTGCGTTAGCCTCGTGGACAACTATCCTCCGTTTTATGGGAGACTTGCCAGATGTTAAATCAGGATCAACTAATGGATCTGAAATATATGT
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      67842 281 -   128984 -CTTCAGCCTTCACCTGTAATGCCACCAGCCAACATTCCTCGAGTTGACTCTTTCATCGATGAAGACCTCAGTAAATTCCAATTCGGAAAGTATGCAGCCACTTTCTTCCAAGCCCAAGCAACAGCTACTCATATCAAGAAACCGTTGAAAACTGCTCTCCTCACTCATACAGAGCCGAGTGCCCAACTTGGAGCTCTTGCTGCTTGGACGACTATTCTTCGATTCATGGGAGACCTTCCTGATACCAAACCAGGATCAACAAATGGATCGGAAATCTATGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057309 282 -  4147112 aTTTCAGCCATCCCCTGTTATGCCACCTACCAATATCCCACGTGTGGATTCATTTGTTGATGAGGACCTGAGCAAGTTCCAGTTCGGAAAGTATGCGGCGACATTCTTCCAAGCCCAAGCTACAGCTACTCACATCAAGAAACCGCTGAAAACTGCACTTTTGACTCACACAGAGCCGAGTGCCCAACTGGCAGCGTTGGCTGCTTGGACAACTATTCTTCGATTCATGGGAGATTTGCCGGATACTAAACCAGGCTCCCAGAATGGATCGGAAATTTATGT
i caePb3.Scfld02_0       I 26 C 0
s caeJap4.Scaffold18213     46677 279 +   720316 ATTCCAGCCTTCCCCCATCATGCCCTCTAC---TATACCAAAGGTCGACTCGTTTGTGGATGAAGACCTAAGCAAGTATCAATTTGGAAAGTATGCAGCCACATTCTTCCAAGCTCAAGCTACTGCTACCCATATTAAAAAACCATTGAAAAATGCTCTTCTCACGCACACAGAACCAAGTGCTCAACTTGCTGCACTGGCTGCCTGGACGACCATTCTAAGGTTTATGGGAGATCTGCCAGATGTTAAACCAGAATCTACAAATGGATATGAAGTTTATGT
i caeJap4.Scaffold18213  C 0 C 0

a score=385.000000
s ce10.chrX               2308559 3 + 17718866 AAG
s cb4.chrX               17039787 3 - 21540570 GAG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40786 3 -   113162 GAG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      68123 3 -   128984 AAT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057591 3 -  4147112 ATG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     46956 0 +   720316 C

a score=-6618.000000
s ce10.chrX               2308562 103 + 17718866 GTTTTTGGCAGTTAAAGAAGTTTTCAGTTCAAGTTGCTTATAGCTCACTTCAGAAACTTTTCTGATAGTTCACATTTAGATACTCTAGTCAAAAATAAACCAG
s cb4.chrX               17039790   7 - 21540570 ------------------------------------TTCATAG------------------------------------------------------------
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3057594  22 -  4147112 -----------------------------CAACTT-GTTATGG----------------------TATTTTACC-----------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     46956   0 +   720316 C
e caeSp111.Scaffold576      68126   0 -   128984 C
e caeRem4.Crem_Contig233    40789   0 -   113162 C

a score=-925.000000
s ce10.chrX               2308665 8 + 17718866 CCAAAAAT
s cb4.chrX               17039797 8 - 21540570 GTAtgttt
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      68126 8 -   128984 CCGAAATT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057616 6 -  4147112 --ACAAGG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     46956 0 +   720316 C
e caeRem4.Crem_Contig233    40789 0 -   113162 C

a score=-9942.000000
s ce10.chrX               2308673 34 + 17718866 CAG--CTGCTGTATTTTTTTCTGGAATAAGGTTATA----
s cb4.chrX               17039805  2 - 21540570 ct--------------------------------------
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      68134  3 -   128984 CAG-------------------------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057622  5 -  4147112 TAGTG-----------------------------------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     46956 12 +   720316 ----------------------------TAGTTATTGTAC
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    40789  0 -   113162 C

a score=0.000000
s ce10.chrX               2308707 3 + 17718866 GTT
e caePb3.Scfld02_0        3057627 0 -  4147112 C
e caeJap4.Scaffold18213     46968 0 +   720316 C
e cb4.chrX               17039807 0 - 21540570 C
e caeSp111.Scaffold576      68137 0 -   128984 C
e caeRem4.Crem_Contig233    40789 0 -   113162 C

a score=-27516.000000
s ce10.chrX               2308710 127 + 17718866 TAGACTCGGGCAATAAAATTAAAATAA--AAGTAATCGGAAACATATTTGTAATTGAAAAATAGTATCCTAGCTACCATGCAATTGTTACTGATTCACCCTTATAAGAATTTTTTATAACCTTCATGAT
s cb4.chrX               17039807  15 - 21540570 ------------------tcgaaa------------------------------------------------------------------------attcttg---------------at---------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40789  35 -   113162 Taaactt-----------tcgaaataa--aa-------------------------------------------------------------tttcattgGTGTAA-----------AAC---------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      68137  23 -   128984 ---------------------AAAGAT--AA-----------------------TGatgaa-----------------------------tgtttcat-------------------------------
i caeSp111.Scaffold576   C 0 C 0
s caeJap4.Scaffold18213     46968  25 +   720316 -----------------ATAGAAATAATTAAATATACAAATA---------------------------------------------------------------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3057627   0 -  4147112 C

a score=670489.000000
s ce10.chrX               2308837 797 + 17718866  
s cb4.chrX               17039822 794 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    40824 800 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      68160 791 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3057627 794 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     46993 800 +   720316  
i caeJap4.Scaffold18213  C 0 I 1266

a score=147848.000000
s ce10.chrX               2309634 191 + 17718866 TC-TATATTTCGAAT-TAA--------CAAAAATTAATATTA---TGTT--TAGGTTTCATCACTGGGAAGTGGCACTGATCACGTTATGGATGCAATTTCACAGTGTGAACAGTATGCAAAGGAGCAAGGAAGGCAAGAGCGGAACGCTCCATGGAGACTATTTTTCAGAAAGGAAATTTTCAGTCCATGGCATGACCCAAGGTA
s cb4.chrX               17040616 189 - 21540570 G--TCCCCTAGAAAA-ATT--------CCATCAGCATTTTTC---TACT---AGGTATCCTCCCTCGGAAGTGGCACTGATCACGTCATGGATGCCATCTCTCAATGTGAACAGTATGCTAAGGAGCAAGGAAGACAAGAAAGGAATGCTCCATGGAGATTGTTCTTCAgaaaggaaattttcagtccatGGCACGATCCAAAgta
i cb4.chrX               C 0 I 46
s caeRem4.Crem_Contig233    41624 192 -   113162 T--TTTTGGTCAAAG-TAC--------TCagaataattttga---tattcGCAGGTATCTTCTCTCGGAAGTGGTACTGATCACGTGATGGATGCCATCTCTCAATGTGAACAATACGCGAAGGAGCAAGGAAGACAAGAAAGAAATGCTCCATGGaggcttttcttcagaaaGGAAATTTTCAGTCCTTGGCATGATCCAAagtg
i caeRem4.Crem_Contig233 C 0 I 4
s caeSp111.Scaffold576      68951 192 -   128984 G--TTTGATGAAAGG-TGT--------TTTCAAGTCATTGTTAAAGTTT---AGGTATCATCCCTTGGAAGTGGAACTGATCATGTTATGGATGCGATTTCACAATGTGAACAGTATGCAAAGGAACAAGGCAGACAAGAGCGGAATGCTCCTTGGAGATTGttcttcagaaaagagattttcagTCCATGGCATGATCCTAAGTA
i caeSp111.Scaffold576   C 0 I 15
s caePb3.Scfld02_0        3058421 196 -  4147112 ---TTTCATCTAAAC-TATAAAAAACCTTTGAATTAACCGTT---TTTT---AGGTATCATCGCTTGGAAGTGGTACTGATCACGTTATGGATGCAATTTCTCAATGTGAACAGTATGCCAAAGAGCAGGGTAGACAGGAGAGAAATGCTCCATGGAGATTGTTCTTCAGAAAGGAAATTTTCAGTCCATGGCATGATCCAAAGTA
i caePb3.Scfld02_0       C 0 I 20
s caeJap4.Scaffold18213     49059 192 +   720316 -TCTCTAATTTAAATCTAA--------CGTGAACAATCAATA---ATTT--CAGGTTTCTTCTCTTGGCAGTGGTACTGATCATGTTATGGATGCGATATCCCAATGTGAGCAGTATGCGAAAGAACAAGGAAGACAAGAAAGAAATGCTCCATGGCGcctatttttccgaaaagaaATTTTCAGCCCGTGGCATGACCTAAAGTA
i caeJap4.Scaffold18213  I 1266 C 0

a score=942.000000
s ce10.chrX               2309825 7 + 17718866 TTTTGTT
s caeRem4.Crem_Contig233    41820 7 -   113162 ttttttt
i caeRem4.Crem_Contig233 I 4 C 0
s caeJap4.Scaffold18213     49251 7 +   720316 ATTTATT
i caeJap4.Scaffold18213  C 0 I 18
e caePb3.Scfld02_0        3058617 20 -  4147112 I
e cb4.chrX               17040805 46 - 21540570 I
e caeSp111.Scaffold576      69143 15 -   128984 I

a score=187.000000
s ce10.chrX               2309832 8 + 17718866 GTAATTTT
s caeRem4.Crem_Contig233    41827 8 -   113162 gaattctt
i caeRem4.Crem_Contig233 C 0 I 18
e caePb3.Scfld02_0        3058617 20 -  4147112 I
e caeJap4.Scaffold18213     49258 18 +   720316 I
e cb4.chrX               17040805 46 - 21540570 I
e caeSp111.Scaffold576      69143 15 -   128984 I

a score=0.000000
s ce10.chrX               2309840 539 + 17718866  
e caePb3.Scfld02_0        3058617  20 -  4147112 I
e caeJap4.Scaffold18213     49258  18 +   720316 I
e cb4.chrX               17040805  46 - 21540570 I
e caeSp111.Scaffold576      69143  15 -   128984 I
e caeRem4.Crem_Contig233    41835  18 -   113162 I

a score=575.000000
s ce10.chrX               2310379 3 + 17718866 ttt
s caePb3.Scfld02_0        3058637 3 -  4147112 TTC
i caePb3.Scfld02_0       I 20 C 0
s caeJap4.Scaffold18213     49276 3 +   720316 TTT
i caeJap4.Scaffold18213  I 18 C 0
e cb4.chrX               17040805 46 - 21540570 I
e caeSp111.Scaffold576      69143 15 -   128984 I
e caeRem4.Crem_Contig233    41835 18 -   113162 I

a score=2142.000000
s ce10.chrX               2310382 13 + 17718866 atttatttttatt
s caeSp111.Scaffold576      69158 13 -   128984 attcatttttaca
i caeSp111.Scaffold576   I 15 C 0
s caePb3.Scfld02_0        3058640 13 -  4147112 ATTAGTTCTAATA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     49279 13 +   720316 TTTCATTATCACT
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17040805 46 - 21540570 I
e caeRem4.Crem_Contig233    41835 18 -   113162 I

a score=910.000000
s ce10.chrX               2310395 1 + 17718866 t
s caeRem4.Crem_Contig233    41853 1 -   113162 t
i caeRem4.Crem_Contig233 I 18 C 0
s caeSp111.Scaffold576      69171 1 -   128984 t
i caeSp111.Scaffold576   C 0 I 9
s caePb3.Scfld02_0        3058653 1 -  4147112 T
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     49292 1 +   720316 T
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17040805 46 - 21540570 I

a score=72514.000000
s ce10.chrX               2310396 97 + 17718866 tttaGAGACGATCCCGTCAGCACAAACTTGATCTACCAGCAAGTAATCCGTGGAATAAAATATGGAGAATACAGATGTGACAAGGTAGTTTTCAGTT
s cb4.chrX               17040851 82 - 21540570 TTCAGAGACGACGCAGTGAGCAccaatttgatctaccaacaAGTGATCCGTGGAATCAAGTATGGAGAGTACAGATGTGATA---------------
i cb4.chrX               I 46 C 0
s caeRem4.Crem_Contig233    41854 82 -   113162 ttcagagATGACCCAGTCAGTACTAATCTGATCTACCAGCAAGTTATCAGAGGAATCAAGTATGGCGAGTATAGATGTGACA---------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      69181 95 -   128984 TTCAGAGATGATCCGGTCAGCACTAATTTGATCTACCAGCAGGTTATTCGTGGTATCAAATATGGAGAGTACAGATGTGATAAGGtatttt--agtt
i caeSp111.Scaffold576   I 9 I 29
s caePb3.Scfld02_0        3058654 90 -  4147112 TGCAGAGATGACCCAGTTAGtacaaatttgatctaccaacaAGTAATTAGAGGAATCAAGTATGGAGAATATAGATGTGATAAGGTAACT-------
i caePb3.Scfld02_0       C 0 I 36
s caeJap4.Scaffold18213     49293 88 +   720316 TTCAGAGATGACCCAGTCAGCACAAACCTGATCTACCAACAAGTCATTCGTGGAATCAGATACGGTGAATATCGTTTCGACAAAGAAG---------
i caeJap4.Scaffold18213  C 0 C 0

a score=0.000000
s ce10.chrX               2310493 34 + 17718866 GTACTCTTACATTATATTGTATTCATGTCTATAT
e caePb3.Scfld02_0        3058744 36 -  4147112 I
e caeJap4.Scaffold18213     49381  0 +   720316 C
e cb4.chrX               17040933  0 - 21540570 C
e caeSp111.Scaffold576      69276 29 -   128984 I
e caeRem4.Crem_Contig233    41936  0 -   113162 C

a score=166024.000000
s ce10.chrX               2310527 177 + 17718866 CAGGATGAAGAGCTTGCCGCCATATGTGCGCAACAATATTACATTGATGAAGGTACAATGGATGTGAATAAACTTGAAAACAACCTTCCGTCTTATCTACCTGATTTTGAAATGTCTGGCAAAGAAATGGCACTTGAGAAATGGACTCAAACAATTATGCATCAGTATAGAAAAGTA
s cb4.chrX               17040933 176 - 21540570 -AGGATGAAGAGCTCGCAGCGATTTGCGCTCAGCAGTACTATATTGATGAGGGCACCATGGATGTGAACAAGTTGGAGAACAACCTTGCATCGTATCTTCCAGACTTTGAAATGGCTGGAAAAGATATGGCGCTAGAGAAATGGACTCAAACTATTATGCATCAATATAGAAAGGTA
i cb4.chrX               C 0 I 787
s caeRem4.Crem_Contig233    41936 176 -   113162 -AAGATGAAGAGCTTGCTGCAATTTGTGCACAACAATATTATATTGATGAGGGGGTGATGGATGTGAATAAACTTGAGAATAATCTCGCTTCATATCTTCCTGATCTTGAGATAGCGGGTAAAGATATGGCACTTGAGAAATGGACGCAGACAATCATGCATCAGTATAGAAAGGTA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      69305 177 -   128984 CAGGATGAGGAGCTTGCTGCTATTTGTGCTCAGCAATACTATATTGATGAGGGAACAATGGACGTGAACAAATTGGAGAACAACCTAACTTCGTATCTTCCAGATTTTGAGATGGCTGGAAAAGATATGGCATTGGAGAAGTGGACTCAGACTATTATGCATCAGTACAGAaaggta
i caeSp111.Scaffold576   I 29 C 0
s caePb3.Scfld02_0        3058780 177 -  4147112 CAGGACGAAGAACTTGCTGCAATTTGTGCACAACAATACTATATCGATGAAGGAACCATGGACGTCAATAAACTGGAAAACAATCTTCCATCCTATCTTCCAGATTTTGAAATGTCAGGAAAAGATATGGCTCTAGAGAAGTGGACTCAAACAATCATGCATCAGTACAGAAAGGTA
i caePb3.Scfld02_0       I 36 C 0
s caeJap4.Scaffold18213     49381 170 +   720316 -------AGGATCTCGCTGCAGTTTGTGCACAACAGTATTACATTGATGAAGGAACAATGGACGTCAACAAATTAGAGAGCTTACTTTCGTCCTACCTTCCAGATTTTGAATTGAGTGGAAAAGAAATGGCTTCGGAGAAATGGACACAAACAATCATGCACCAATACAGAAAGGTA
i caeJap4.Scaffold18213  C 0 C 0

a score=-12860.000000
s ce10.chrX               2310704 33 + 17718866 ---------ATTTGTGAATTGAAACTTTAGTCTAGTCTGT------------GT
s caeRem4.Crem_Contig233    42112 36 -   113162 ----------------CCCTCATGAATCATCGCACAGTGTTCACCTTTTCAT--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      69482 29 -   128984 ---------tttttgaaattt--ctatcACCCcaaattat--------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3058957 31 -  4147112 ---------TTTTGTATATCCGAGAattaatcaaaagttt--------------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     49551 36 +   720316 TGAacgaagtttaaaaaattatgagaTCAGTGAGTT------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17041109 787 - 21540570 I

a score=377437.000000
s ce10.chrX               2310737 491 + 17718866 CAATTTTG--TTTCAGAAATTCACTGGCCGACTTCCTTCTCAGATTGAAGTCAAAGAAAACGTCGTTTCTGTTGCAAAAACAAAATGGCCTCTTTTGTTCTCCAGATTCTATGAAGCATTGAAATTCGCTGGACCCCCATTACCAAAGAATGAAGTTATTATTGCTGTGAATTGGACTGGTGTCTATGTGGTTGATGATCGAGAGCATGTGATGCTCGAGTTCAGTTTTCCAGAAATATCAACGGCTTATTATGGAAAGTTCGTAACTTTTTTTTGTATTCATGTAT------------TATACATTGTATTTTAA---TTCTCAATTT--AGGGGAAAACGAAGTACAACCGACACTTGCACAGTCAGAACTGTGGTTGGAGACGAGTACACATTCCAATCACCAAACGCAGATGATATCACTAATCTAATTGTTATGTTCCTGGAAGGCCTGAAAAAGCGAAGCAGATATCTTGTTGCTATCAAGTCTCAAAAAGGAGACGGTAAGTG
s cb4.chrX               17041896 482 - 21540570 CATTCTTT--TTACAGAAGTTCACTGGCCGCCTTCCCTCTCAAATCGAAGTCAAGGAAGACGTCGTATCCATTGCTAAAACCAAGTGGCCTCTGTTGTTCTCTCGATTCTATGAAGCTCTGAAGTTCGCTGGACCTCCATTGCCGAAAAATGAAGTCATCATTGCCGTGAACTGGACTGGTGTCTATGTCGTTGATGATCGGGAGCACGTAATGCTCGAGTTCAGtttcccagaaatttcaaCTGCTTATTATGGAAAGTGAGT----------TACTATTATGAAGATATAGGCTTTCCACAAGAATTTGCTT------------TTC--AGAGGAAAACGAAGTACCACGGACACCTGCACTATCCGCTCTGTTGTTGGCGACGAGTACACCTTCCAGTCTCCAAATGCAGATGATATAACAAACCTGATAGTTCTATTCTTGGAAGGATTAAAGAAGAGAAGTAGATATTTGGTGGCCATCAAAGCACAGAAAGGAGATGGTAGA--
i cb4.chrX               I 787 I 1
s caeRem4.Crem_Contig233    42148 480 -   113162 --Ccgttt--tttcagaagttcacTGGACGTCTTCCATCCCAAATTGAAGTCAAAGAAGATGTTGTGTCTATTGCAAAGACCAAGTGGCCTCTCCTGTTCTCCAGGTTCTATGAAGCACTGAAATTCGCTGGACCACCTCTTCCAAAGAATGAAGTTATTATTGCTGTAAACTGGACTGGTGTTTATGTAGTTGATGACAGAGAACATGTTATGCTTGAATTCAGTTTCCCGGAAATTTCAACTGCCTATTACGGAAAGTGAGTGCATTTAGTGTGTTAttgaaaaa------------catggaaaatgcTTC------------TTC--AGGGGAAAACGAAGTACAACAGACACTTGCACAATTCGGTCTGTGGTAGGAGACGAGTATACATTCCAATCCCCGAACGCTGATGATATCACTAATCTGATAGTCTTGTTCTTAGAGGGTCTGAAGAAGCGAAGTAGATATCTTGTTGCAGTGAAGTCACAGAAAGGAGACGGTTCGTt
i caeRem4.Crem_Contig233 C 0 I 5
s caeSp111.Scaffold576      69511 476 -   128984 --c--ttt--ttccagaaattcacTGGCCGACTCCCATCACAAATTGAAGTCAAAGAGGACGTCGTTTCGATTGCAAAAACGAAATGGCCACTTCTGTTCTCTAGATTCTACGAAGCTTTGAAGTTTGCCGGACCACCACTTCCAAAGAATGAAGTGATTATAGCTGTGAACTGGACTGGTGTCTATGTGGTCGACGATAGAGAGCACGTGATGCTTGAGTTTAGTTTCCCGGAAGTTTCCACTGCGTACTATTCAAAGTTAGT--CCCTCATttataaatattcaa------------tttcaaattttcatt------------ctc--agaGGTAAACGAAGTACAACAGACACATGCACCATTCGGACAGTTGTTGGCGACGAGTACACATTCCAATCTCCAAATGCTGATGATATCACAAACTTGATAGTTCTGTTCTTGGAAGGACTTAAGAAACGTAGTAGATATCTGGTAGCCGTCAAATCTCAAAAGGGAGATGGTATGTG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3058988 486 -  4147112 --caattc--aTCCAGAAGTTTACTGGTAGACTTCCATCACAAATTGAAGTAAAAGAGGACGTCGTGTCTATCGCCAAGACTAAATGGCCATTGTTATTCTCAAGGTTCTATGAAGCTCTGAAGTTTGCCGGACCGCCATTGCCAAAGAACGAAGTTATAATCGCAGTTAACTGGACCGGTGTATATGTGGTTGATGATAGAGAGCACGTGATGCTTGAATTCAGTTTCCCAGAAATTTCAACAGCGTATTATTCTAAGTGagt--atttc-tttgtttttacgaaa------------cttccagttttcatttc---ttttcgcTTC--AGAGGAAAACGAAGTACAACCGATACATGTACTATTCGAACCGTTGTGGGAGATGAATACACTTTCCAGTCGCCAAATGCAGATGATATCACTAATTTGATTGTTCTGTTCCTGGAAGGATTGAAGAAGCGGAGTAGATATTTGGTGGCCATCAAATCTCAGAAAGGAGATGGTAAGAA
i caePb3.Scfld02_0       C 0 I 23
s caeJap4.Scaffold18213     49587 485 +   720316 ----ATTCGATTGTAGAAATTTACTGGACGTCTTCCATCACAAATTGAAGTAAAAGAAGATGTTGTGTGCACTGCTAAAACAAAATGGCCTTTGTTGTTCTCTCGTTTCTATGAAGCGCTTAAGTTTTCGGGGCCTCCACTTCCCAAGAATGAGGTTATCATTGCGGTGAACTGGACTGGTGTTTATGTGGTTGATGATCGTGAACATGTTATGCTCGAATTCagttttcctgaaatttccacAGCGTACTATGTAAAGTGAGT---------TTGTTCAGTAgaag------------tttgaaaatttaattaaactTTTCCAATTCATAGGGGAAAACGAAGCACCGCAGACACTTGCACCATTCGCAGTGTGGTCGGTGATGAATACACTTTCCAATCTCCAAATTCCGATGACGTCACTAACTTGATAACTTCTTTCCTGAAAGGATTGAAAACAAGAAGTAGATATCTTGTTGCAATCAAGTCTCAAAAGGGTGATGGTAAGTG
i caeJap4.Scaffold18213  C 0 C 0

a score=-4362.000000
s ce10.chrX               2311228 24 + 17718866 CGTGCCCGGTCGGAAAAACAGGAA--
s cb4.chrX               17042379 24 - 21540570 TTTTCTTAGAACTGCAAATTTGAA--
i cb4.chrX               I 1 I 3
s caeRem4.Crem_Contig233    42633 24 -   113162 tttccttttttcagtagacttcaa--
i caeRem4.Crem_Contig233 I 5 I 1
s caeSp111.Scaffold576      69987 22 -   128984 --GTCGATGTCCTGAAAATTCACA--
i caeSp111.Scaffold576   C 0 I 4
s caeJap4.Scaffold18213     50072 26 +   720316 TATACTGTTTGATACAAGCAACAATA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3059474 23 -  4147112 I

a score=392386.000000
s ce10.chrX               2311252 550 + 17718866  
s cb4.chrX               17042406 545 - 21540570  
i cb4.chrX               I 3 C 0
s caeRem4.Crem_Contig233    42658 542 -   113162  
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576      70013 544 -   128984  
i caeSp111.Scaffold576   I 4 C 0
s caePb3.Scfld02_0        3059497 538 -  4147112  
i caePb3.Scfld02_0       I 23 C 0
s caeJap4.Scaffold18213     50098 539 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=910.000000
s ce10.chrX               2311802 1 + 17718866 A
s cb4.chrX               17042951 1 - 21540570 A
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      70557 1 -   128984 A
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060035 1 -  4147112 A
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     50637 1 +   720316 A
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    43200 0 -   113162 C

a score=2292.000000
s ce10.chrX               2311803 4 + 17718866 AGGT
s cb4.chrX               17042952 4 - 21540570 AGGT
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      70558 4 -   128984 AGGT
i caeSp111.Scaffold576   C 0 I 35
s caePb3.Scfld02_0        3060036 4 -  4147112 AGGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     50638 0 +   720316 C
e caeRem4.Crem_Contig233    43200 0 -   113162 C

a score=-609.000000
s ce10.chrX               2311807 3 + 17718866 GAG-
s cb4.chrX               17042956 2 - 21540570 -AA-
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3060040 3 -  4147112 -AGG
i caePb3.Scfld02_0       C 0 I 39
e caeJap4.Scaffold18213     50638 0 +   720316 C
e caeSp111.Scaffold576      70562 35 -   128984 I
e caeRem4.Crem_Contig233    43200 0 -   113162 C

a score=-7329.000000
s ce10.chrX               2311810 700 + 17718866  
s cb4.chrX               17042958 436 - 21540570  
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3060043  39 -  4147112 I
e caeJap4.Scaffold18213     50638   0 +   720316 C
e caeSp111.Scaffold576      70562  35 -   128984 I
e caeRem4.Crem_Contig233    43200   0 -   113162 C

a score=29.000000
s ce10.chrX               2312510 1 + 17718866 T
s cb4.chrX               17043394 1 - 21540570 C
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3060082 1 -  4147112 t
i caePb3.Scfld02_0       I 39 C 0
e caeJap4.Scaffold18213     50638 0 +   720316 C
e caeSp111.Scaffold576      70562 35 -   128984 I
e caeRem4.Crem_Contig233    43200 0 -   113162 C

a score=-381.000000
s ce10.chrX               2312511 3 + 17718866 TTC-
s cb4.chrX               17043395 3 - 21540570 -TTA
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      70597 3 -   128984 ttt-
i caeSp111.Scaffold576   I 35 C 0
s caePb3.Scfld02_0        3060083 3 -  4147112 ttt-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     50638 0 +   720316 C
e caeRem4.Crem_Contig233    43200 0 -   113162 C

a score=1000.000000
s ce10.chrX               2312514 1 + 17718866 C
s cb4.chrX               17043398 1 - 21540570 C
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    43200 1 -   113162 c
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      70600 1 -   128984 c
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060086 1 -  4147112 c
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     50638 0 +   720316 C

a score=401235.000000
s ce10.chrX               2312515 475 + 17718866 AGAGAAGATGCTTGCCGTGGTGCTATCGAAATATTCGCAGCGATCATGAAGTACATGGGCGACGAGCCATCAAAGAGAAGTCGCCTCGGAACTCATCTAACTGATCACATTTTCAAATTGCCAATTTCGATGGAAGCCCTGCGCGATGAACTGTACTGCCAACTTGTGAAACAATTGACTTTGAATCCTTCAATCATGTCAGAGGAGCGTGGTTGGGAGCTTCTCTGGATGGCAACTGGGCTATTTGCTCCGAGTGCTGCTCTGGCAAAAGAAATCAGTCATTTCCTGAAATCCAGACCACATCCTATAGCATTAGATTGTCAGAATCGCATGCAGAAGCTTGCGAAGTAAGTCAAAAATT-----GTGAGCTTCAAGCGG-------AAAAT-AATGTTTTTACAGGGGCGGAAGCAGGAAATATCCCCCACATCTTGTCGAAGTTGAGGCAATTCAACACAAAACAACGCAAATCTTCCATAAAGT
s cb4.chrX               17043399 479 - 21540570 AGAGATGATGCTTGTCGTGGGGCAGTTGAAATTTTCGCAGCCATCATGAAGTATATGGGAGATGAGCCTTCGAAACGAAGTCGCCTTGGAACTCACCTCACTGACCATATCTTCAAACTCCCCATTTCTATGGAAGCACTCAGAGATGAATTGTATTGTCAACTTGTGAAACAGCTAACCCTTAATCCTTCAATTATGTCCGAGGAGAAAGGATGGGAGCTTTTATGGATGGCCACTGGACTTTTTGCTCCGAGTGCTGCTCTGGCGAAAGAGATCAGTCACTTCCTCAAGTCTAGACCCCATCCAATCGCATTGGATTGTCAGAATAGGATGCAAAAACTTGCCAAGtacgttttccgttttttaatatgtttttaaagc--------atag-tttattttttcaggggCGGAAGTAGAAAATATCCCCCACATCTTGTTGAGGTAGAAGCTATCCAGCACAAAACaactcaaattttccacaAGGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    43201 474 -   113162 AGAGATGATGCTTGTCGTGGAGCAGTGGAAATATTCGCAGCAATCATGAAGTATATGGGAGATGAACCATCAAAAAGAAGTCGCCTTGGAACTCACTTGACTgatcatattttcaaacttccaaTTTCAATGGAAGCTTTAAGGGATGAACTTTACTGTCAACTTGTAAAGCAGTTAACATTGAATCCTTCGATTATGTCCGAAGAGCGAGGATGGGAACTTTTATGGATGGCCACCGGATTGTTTGCCCCAAGTGCTGCATTGGCCAAAGAAATAAGTCATTTCCTGAAGTCAAGACCTCATCCAATTGCATTGGACTGTCAGAACCGTATGCAGAAACTTGCCAAGTGagt-------------agaaatttgaagaactcAAATAAACAT-TCTAATTTTGCAGGGGCGGAAGTAGAAAGTATCCACCACATCTTGTCGAAGTTGAAGCTATTCAACATAAGACAACACAAATATTCCATAAGGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      70601 472 -   128984 agagatGATGCTTGTCGAGGAGCAGTTGAAATCTTTGCAGCCATCATGAAGTACATGGGAGATGAGCCTTCGAAGAGAAGTCGCCTCGGCACTCATCTAACGGATCACATATTCAAGCTTCCAATTTCGATGGAAGCGTTGAGAGACGAACTGTATTGTCAACTTGCGAAACAGTTGACATTGAATCCGTCAATTATGTCTGAAGAACGTGGATGGGAACTTCTTTGGATGGCCACTGGATTATTTGCTCCGAGTGCTGCGTTGGCAAAAGAGATTAGTCATTTCTTGAAATCTAGACCGCATCCGATTGCATTGGACTGCCAGAACCGTATGCAGAAACTCGCGAAGTA------ATCTATTCTCATAGATTTCCAAaga----------aattatgttttttcagagGTGGAAGCAGAAAATATCCTCCTCATTTGGTAGAAGTTGAAGCGATTCAGCACAAGACAACTCAGATTTTCCATAAAGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060087 477 -  4147112 agagatgatGCTTGCCGAGGAGCTGTTGAAATCTTCGCTGCTATTATGAAATACATGGGAGATGAACCATCGAAGAGAAGTCGTCTAGGAACCCATCTGACAGACCACATATTCAAACTTCCAATTTCAATGGAAGCATTGAGAGATGAACTTTATTGTCAACTTGTGAAACAGTTGACTTTGAACCCCTCAATAATGTCTGAAGAACGTGGATGGGAACTTTTATGGATGACTACTGGCCTATTCGCACCAAGTGCTGCACTTGCAAAAGAAATAAGTCATTTCTTGAAGTCAAGACCACATCCAATCGCGCTAGATTGTCAAAATCGTATGCAGAAACTTGCAAAGTAAGTgatatagatttttttttgtttccaaaac----------aa-aaaacattttcagaggcGGAAGTAGAAAGTATCCTCCACATCTCGTCGAAGTTGAAGCTATCCAGCACAAAACTACACAGATCTTCCATAAAGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     50638 428 +   720316 AGAGATGACGCTAGTCATGGTGCTGTTGAGATTTTCTCAGCTATTATGAAGTATATGGGTGATGAACCAGCAAAGAGGAGCCGATTGGGAACTCACTTGACGGATCACATATTCAAACTTCCTATTGCAATGGAGGTTTTGCGAGATGAATTGTATTGCCAGATTGTAAAGCAGTTGACACTGAACCCATCTATGATGTCTGAAGAACGTGGTTGGGAACTTTTGTGGATGACAACTGGAATGTTTGCTCCAAGTGCTACACTTGCCAAGGAAATTCAACATTTCCTCAAATCTCGACCTCACCCCATTGCCTTGGATTGCCAGAATCGTATGCAGAAATTGGCGA---------------------------------------------AA---------------GGCGGTAGCAGAAAATATCCTCCACATCTTGTTGAAGTAGAAGCTATTCAACACAAAACTACACAAATTTTCCATAAAGT
i caeJap4.Scaffold18213  C 0 I 32

a score=-14307.000000
s ce10.chrX               2312990 56 + 17718866 ACGTTTTTCATTTAATATGCATTTTTTGTGTTTTTCAACCGTGCAACTGTTCCAAA
s cb4.chrX               17043878 10 - 21540570 CAG------------------------------TTCAACT----------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    43675 40 -   113162 AAACGCTTTGTTGTGAA-------------TTTTTCGACCGATCA---GTTTTAAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      71073 15 -   128984 -AGCTATTGAACGCAA----------------------------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060564 16 -  4147112 GAGCTTCTAAAAATAA----------------------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     51066 32 +   720316 I

a score=-11898.000000
s ce10.chrX               2313046 99 + 17718866 GGTCGAAAAATCTCGCCACCACT-TGTTTTTAGTTCCTGCTTTTTTTCAGCCGCCTAGACTTTGATCTGTACTTTGTCCATCGTATGCTAACACTTTCCC
s cb4.chrX               17043888 28 - 21540570 ------------------------TTCTTCTTAACTCACTTTATCTTC------------------CTGT------------------------------
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      71088 20 -   128984 --------------------att-tatattgaaaattaatt-----------------------------------------------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060580 23 -  4147112 ------------------CCATCATATataaaatatcaatt-----------------------------------------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     51066 32 +   720316 I
e caeRem4.Crem_Contig233    43715  0 -   113162 C

a score=59.000000
s ce10.chrX               2313145 3 + 17718866 ATT
s caeJap4.Scaffold18213     51098 3 +   720316 ata
i caeJap4.Scaffold18213  I 32 C 0
e caePb3.Scfld02_0        3060603 0 -  4147112 C
e cb4.chrX               17043916 0 - 21540570 C
e caeSp111.Scaffold576      71108 0 -   128984 C
e caeRem4.Crem_Contig233    43715 0 -   113162 C

a score=665377.000000
s ce10.chrX               2313148 755 + 17718866  
s cb4.chrX               17043916 755 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    43715 799 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      71108 793 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3060603 798 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     51101 809 +   720316  
i caeJap4.Scaffold18213  C 0 I 29

a score=-3088.000000
s ce10.chrX               2313903 29 + 17718866 GACGAGTATTACAGCACT-----TGATCAAAACA
s cb4.chrX               17044671 27 - 21540570 GAGGATTT--AGAGTTTT-----AGATCCACACA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44514 29 -   113162 GATGATTCAGAGAGTCGT-----GTGactgaaaa
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3061401 32 -  4147112 agtttttc--aaagtttccctAGTTATTCAAgcc
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     51910 29 +   720316 I
e caeSp111.Scaffold576      71901  0 -   128984 C

a score=131396.000000
s ce10.chrX               2313932 127 + 17718866 ATTGT--TTTCAGTATCCATTCAATGTAATTTGTAATTGGACAAGTGGAAACACATACTTTAACATGACCGTTGGTAATATGCTGAAGGGTAACGAAGGAAAGAAACTTCTTCTTGACACCACTGTCGT
s cb4.chrX               17044698 129 - 21540570 TTGTTTATTACAGTATCCGTTCAATGTCATTTGCAACTGGACAAGTGGAAATACTTACTTCAACATGACAGTTGGTAATATGTTGAAGGGTAATGAAGGAAAGAAGCTGCTTCTGGATACTACTGTGGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44543 127 -   113162 ctagt--tttcagtATCCATTCAATGTGATCTGTAACTGGACCAGTGGAAACACGTACTTCAACATGACGGTTGGAAATATGTTGAAGGGTAATGAAGGAAAGAAACTCCTTTTGGATACTACTGTGGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      71901 121 -   128984 --------TACAATATCCATTCAATGTGATCTGCAATTGGACAAGCGGAAATACCTATTTCAATATGACAGTTGGTAACATGTTGAAGGGTAATGAAGGAAAGAAACTCCTTCTTGATACTACTGTGGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3061433 127 -  4147112 atatt--tttcagtatcCATTCAATGTGATATGCAATTGGACCAGTGGAAATACCTATTTCAACATGACCGTTGGCAACATGTTGAAGGGTAATGAAGGAAAGAAACTACTTCTTGATACTACTGTGGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     51939 127 +   720316 ATTTT--TTGCAGTATCCATTCAATGTGATTTGCAACTGGACCAGTGGAAATACATACTTCAACATGACGGTTGGCAACATGCTAAAGGGAAATGAGGGGAAGAAACTGCTTTTGGATACAACTATGGT
i caeJap4.Scaffold18213  I 29 I 40

a score=-2093.000000
s ce10.chrX               2314059 11 + 17718866 GAGTTTATCTT
s cb4.chrX               17044827  3 - 21540570 ACG--------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44670  8 -   113162 acgttgat---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      72022 11 -   128984 ATGTTGCTTTT
i caeSp111.Scaffold576   C 0 I 29
s caePb3.Scfld02_0        3061560 11 -  4147112 ATGCTAAactt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     52066 40 +   720316 I

a score=249.000000
s ce10.chrX               2314070 18 + 17718866 TTTTTTGCAG--AGTGTCAG
s caeRem4.Crem_Contig233    44678 18 -   113162 tttttaatat--acTTTCAA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3061571 17 -  4147112 ---ttgatctgaaatttcaa
i caePb3.Scfld02_0       C 0 I 9
e caeJap4.Scaffold18213     52066 40 +   720316 I
e cb4.chrX               17044830  0 - 21540570 C
e caeSp111.Scaffold576      72033 29 -   128984 I

a score=0.000000
s ce10.chrX               2314088 9 + 17718866 GCGCGTGAA
e caePb3.Scfld02_0        3061588 9 -  4147112 I
e caeJap4.Scaffold18213     52066 40 +   720316 I
e cb4.chrX               17044830 0 - 21540570 C
e caeSp111.Scaffold576      72033 29 -   128984 I
e caeRem4.Crem_Contig233    44696 0 -   113162 C

a score=-106.000000
s ce10.chrX               2314097 57 + 17718866 TTAGGGTAGACGAATAGTATGCTTACCCCAAAAATATTTTTCTATACGTTTTTCATT
s cb4.chrX               17044830 39 - 21540570 ------------------ACACtttcataaaaaaattttcaaaaatcatttttcaaa
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3061588  9 -  4147112 I
e caeJap4.Scaffold18213     52066 40 +   720316 I
e caeSp111.Scaffold576      72033 29 -   128984 I
e caeRem4.Crem_Contig233    44696  0 -   113162 C

a score=0.000000
s ce10.chrX               2314154 359 + 17718866 CATTCAAAAAGTCACGTAAAAGTTTCCAAATAGTTAACATTTTTGAGGCGGGTATACTACAAAAATTTTGTTTGATCTCCAAAAATTGTGGGAATAGCCACACCAAATGACTTTcgtgaagccaggctgtcccattacggactgatctacaaaaaatgcgggaattttttgttcaaaaaaatgtgacgtcagcatgttcttaaccatgcaaaatcagttgagaactctgcgtctcttctcccgtattttttgtagatttgcgtagatcaagccgaaatgagacacactgacaccacgtgTGTACCCGTGATTTTCATCCTGGCCAACCGAATACACATGAAAGCATCATCCATTACAAC
e caePb3.Scfld02_0        3061588   9 -  4147112 I
e caeJap4.Scaffold18213     52066  40 +   720316 I
e cb4.chrX               17044869   0 - 21540570 C
e caeSp111.Scaffold576      72033  29 -   128984 I
e caeRem4.Crem_Contig233    44696   0 -   113162 C

a score=828.000000
s ce10.chrX               2314513 9 + 17718866 GATAATAAA
s caeRem4.Crem_Contig233    44696 9 -   113162 GATAATAAA
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3061588 9 -  4147112 I
e caeJap4.Scaffold18213     52066 40 +   720316 I
e cb4.chrX               17044869 0 - 21540570 C
e caeSp111.Scaffold576      72033 29 -   128984 I

a score=-449.000000
s ce10.chrX               2314522 17 + 17718866 ----TACTTACTATCAGTAAC
s caeRem4.Crem_Contig233    44705 14 -   113162 TTcttatgtatttt-------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      72062 14 -   128984 ----TATTCATTATCAAT---
i caeSp111.Scaffold576   I 29 C 0
e caePb3.Scfld02_0        3061588  9 -  4147112 I
e caeJap4.Scaffold18213     52066 40 +   720316 I
e cb4.chrX               17044869  0 - 21540570 C

a score=182.000000
s ce10.chrX               2314539 2 + 17718866 AT
s caeJap4.Scaffold18213     52106 2 +   720316 at
i caeJap4.Scaffold18213  I 40 C 0
e caePb3.Scfld02_0        3061588 9 -  4147112 I
e cb4.chrX               17044869 0 - 21540570 C
e caeSp111.Scaffold576      72076 0 -   128984 C
e caeRem4.Crem_Contig233    44719 0 -   113162 C

a score=95372.000000
s ce10.chrX               2314541 116 + 17718866 TTTCCAGGGTTACAAAATGGACGACTTGCTCACCTCTTATATATCACTGCTAATATCAAATCAAAATAATCACCCATCAAAAACTAGGGAAGTGGCATTAT-AGATTGTTTAAAGTT
s cb4.chrX               17044869 106 - 21540570 ttttcagggctACAAAATGGATGACTTGCTTACTTCGTATATATCACTTTTGATATCCAATCAGACCAATCAACCTTCTAAGCATCGAGAAGTTGCATTatgagat-----------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44719 113 -   113162 ttttcagggtTACAAAATGGACGATTTGCTCACCTCATATATATCTCTTCTGATATCAAACCAAAATAATCATCCCTCTAAACATAGGGAGGTGGCACTAT-AGATTCTATACA---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      72076 110 -   128984 TTCACAGGGTTACAAAATGGACGATTTGCTCACTTCTTATATATCACTCTTGATTTCCAATCAAAATAATCATCCTTCAAAGAATAGGGAAGTGGCATTAT-agattcaaa------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3061597 116 -  4147112 ttttcagggtTACAAAATGGACGATTTGCTCACTTCTTATATATCTCTGTTGATTTCTAACCAAAATAATCATCCCTCAAAACATAGGGAAGTGGCATTAt-agactttgaaaaact
i caePb3.Scfld02_0       I 9 I 12
s caeJap4.Scaffold18213     52108 116 +   720316 ttttcaGGGTTACAAGATGGACGATTTGCTCACTTCATATATTTCACTGATGATTTCCAATCAGAATAATCACCCGGCTAAGCGTAGAGAAATGGCACTTT-AAACTTTCATGAAtt
i caeJap4.Scaffold18213  C 0 C 0

a score=-1441.000000
s ce10.chrX               2314657 15 + 17718866 ATTTTTTTTTCTTTC--
s cb4.chrX               17044975  9 - 21540570 ------tttgatttt--
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44832  9 -   113162 ------TTTCATTTG--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      72186 13 -   128984 --catttttcaaatt--
i caeSp111.Scaffold576   C 0 I 1
s caeJap4.Scaffold18213     52224 15 +   720316 --tctttcttatttttt
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3061713 12 -  4147112 I

a score=-13892.000000
s ce10.chrX               2314672 357 + 17718866  
s cb4.chrX               17044984 521 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    44841 443 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      72200 391 -   128984  
i caeSp111.Scaffold576   I 1 C 0
s caePb3.Scfld02_0        3061725 411 -  4147112  
i caePb3.Scfld02_0       I 12 C 0
s caeJap4.Scaffold18213     52239 416 +   720316  
i caeJap4.Scaffold18213  C 0 I 96

a score=-15945.000000
s ce10.chrX               2315029 57 + 17718866 GATTTATTT-----TCTTATGTTTTAATTTTTTTGGTTCTGATGAA---------AATCGAATTATCCTGG----------
s cb4.chrX               17045505 25 - 21540570 -------------------------------------------------------ATTCACAAAAACCAAG-CTATGTaca
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    45284 65 -   113162 ---ttgtttttggatttttttttgaattttttttggttgt------------ttGGTTCCGATgaacaaaa-taatatttc
i caeRem4.Crem_Contig233 C 0 I 32
s caeSp111.Scaffold576      72591 69 -   128984 ---gaattt-----tttgtttttcgactttttttggttttgggaCACTGGTTCCGATTTGGACGAGCATTATCAACA----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062136 51 -  4147112 ---ttgttt-----ttttttgttcaa-----------------aatctgGTGCTGATTCAATTCAGGGCTA-CTCTA----
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     52655 96 +   720316 I

a score=-281.000000
s ce10.chrX               2315086 8 + 17718866 ATGCTACA
s cb4.chrX               17045530 8 - 21540570 aactaata
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      72660 3 -   128984 -----ATA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062187 3 -  4147112 -----ATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     52655 96 +   720316 I
e caeRem4.Crem_Contig233    45349 32 -   113162 I

a score=-2891.000000
s ce10.chrX               2315094 13 + 17718866 TATT--CTTGAATTT
s cb4.chrX               17045538 13 - 21540570 aatt--atttaaaat
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      72663 11 -   128984 AATT--ATCGGAA--
i caeSp111.Scaffold576   C 0 I 1
s caePb3.Scfld02_0        3062190 15 -  4147112 GATTGAACCAGAAAG
i caePb3.Scfld02_0       C 0 I 1
s caeJap4.Scaffold18213     52751 13 +   720316 CATT--TGTATATTT
i caeJap4.Scaffold18213  I 96 C 0
e caeRem4.Crem_Contig233    45349 32 -   113162 I

a score=80207.000000
s ce10.chrX               2315107 399 + 17718866  
s cb4.chrX               17045551 433 - 21540570  
i cb4.chrX               C 0 I 14
s caeRem4.Crem_Contig233    45381 402 -   113162  
i caeRem4.Crem_Contig233 I 32 C 0
s caeSp111.Scaffold576      72675 395 -   128984  
i caeSp111.Scaffold576   I 1 I 11
s caePb3.Scfld02_0        3062206 422 -  4147112  
i caePb3.Scfld02_0       I 1 I 5
s caeJap4.Scaffold18213     52764 533 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=-138.000000
s ce10.chrX               2315506 2 + 17718866 CT
s caeSp111.Scaffold576      73081 2 -   128984 AT
i caeSp111.Scaffold576   I 11 C 0
s caePb3.Scfld02_0        3062633 2 -  4147112 AG
i caePb3.Scfld02_0       I 5 C 0
s caeJap4.Scaffold18213     53297 2 +   720316 AT
i caeJap4.Scaffold18213  C 0 I 55
e cb4.chrX               17045984 14 - 21540570 I
e caeRem4.Crem_Contig233    45783 0 -   113162 C

a score=-3442.000000
s ce10.chrX               2315508 21 + 17718866 TTTTGAAATTCAATTCACTAA
s caeRem4.Crem_Contig233    45783  6 -   113162 -tgagaa--------------
i caeRem4.Crem_Contig233 C 0 I 7
s caeSp111.Scaffold576      73083 17 -   128984 ATTCAAACGTT-GATCAA---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062635 18 -  4147112 TTCGGAACTTTAGAGCAA---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     53299 55 +   720316 I
e cb4.chrX               17045984 14 - 21540570 I

a score=-5131.000000
s ce10.chrX               2315529 18 + 17718866 ATTCAGAAGTAAA--------AACTC
s cb4.chrX               17045998 24 - 21540570 ATTCaaaaaaaCGCTTCCG--GACTC
i cb4.chrX               I 14 C 0
s caeRem4.Crem_Contig233    45796 26 -   113162 AATTGAAGACATGTTTTCATCTGCTT
i caeRem4.Crem_Contig233 I 7 C 0
s caeSp111.Scaffold576      73100  7 -   128984 -TTT------------------TCTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062653 15 -  4147112 -TTTCAAGATA----------ATTTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     53299 55 +   720316 I

a score=239571.000000
s ce10.chrX               2315547 291 + 17718866 ACCAAGCTACTCTTGTCCGATGTCATCATTTTAGCTACAGTCTCGAAAACAGTGTAACTAGACCGTCCATATACCAATCGCGATTGCAGTGATTGCAAAATCTTGACCGGCTCTTTGAGCATATCATGGAAGTTTCCTCCTTGGTGGCTCATGATTTCCAGAATTATGTCCTTTCTCGCAAGCATATTCACAATTTGTTTGAAATCATTCACAACCGGAATTGTAGACATTTTTCGTTCCGACATCAACTTGATGGCCTCCTCAATCGTGGTATTCAAGCCGATCTGAAA-T-
s cb4.chrX               17046022 291 - 21540570 ACCAAACAGCACTTATCGGAAGTCATAAGCTTGGCGACCGTCTCGAACACCGTGAAATTCGTGCGTCCATAAACTAATCTATTCTGAAGTGAGCGCAGCACTTTGACGGGCTCTTTGAGCATCTCGTGGAAGTTTCCGCCCTGGTGGCTCATGATCTCGAGAATGATGTCCTTTCTGGCGAGCATATTGACGATTTGATTGAAGTCGTTGACGACTGGAACGGTGGACATCTTCTTCTCGGCCATCAGCTTGATGCAATCTTCGATGGTTGTGTTCAAGCCGATCTGAAAT--
i cb4.chrX               C 0 I 1300
s caeRem4.Crem_Contig233    45822 290 -   113162 ACCAAGCAACTCTTATCCGAAGTTATAAGTTTGGCAACAGTTTCAAACACCGTGAAATTGGTGCGTCCATAGACCAACGGATTCTGAAGAGATCGAAGAATTTTGACTGGCTCTTTGAGCATGTCGTGGAAGTTTCCGCCTTGATGGCTCATGATCTCCAAAATAATGTCCTTTCTTGCAAGCATATTCACGATTTGGTTAAAATCATTGACGACTGGAATgcttgacatttttttctcagccATCATTTTAATGGTGTCCTCGATGGTAGTGTTCAaaccaatctgaaa---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      73107 289 -   128984 ACCAAGCTACTCTTATCCGCAGTCATCAGTTTAGCCACTGTTTCAAACACAGTGAAATTGACTCGCCCATAAACCAATCGGCTTTGAAGTGAACGGAGAATCTTAACGGGCTCTTTGAGCATCTCGTGGAAGTTTCCTCCTTGATGGCTCATGATTTCAAGAATGATATCTTTTCTGTTGAGCATGTTAACAATCTGGTTGAAATCATTGACAACTGGGATTGTCgacatcttcttttcagccATCAGTTTGATTGCGTCCTCAATAGTGGTGTTCAAtccaatctgaa----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062668 290 -  4147112 ACCAAGCTACTCTTGTCGGTGGTCATAAGTTTGGCAACAGTTTCAAACACTGTGAAGTTAGTTCGTCCATACACCAGCCGGTTCTGAAGTGATTGAAGGGTTTTGACAGGCTCTTTGAGCATATCATGGAAGTTTCCTCCTTGATGGGCCATGATTTCCAAGATGATGTCCTTTCTGTTGAGCATATTGACGATTTGATTGAAGTCATTGACGACTGGAATTGTCGACATCTTCTTTTCAGCCATCAACTTGATAGTGTCTTCGATGGAAGTGTTCAATCCGACCTGAAA---
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     53354 291 +   720316 ACCAAACAGTTTTTATCCGTAGTGCTAAGTTTTGCCACAGTTTCAAAGATTGTGTAGTTGGGCCGCCCGTATACCAATTTGTTCTGCATGCAGCGAAGTGATTTGACTGGCTCGTTGAGCATGTCATGGAAATTTCCTCCTTGGTGATTCATAATCTCAAGAACTATGTCTTTGCGGTTGAGCATTCCAATGATTTGGTGGAAGTCATTGACTACTGGGATCGTCGACATCTTTTTGTCAGCGATCAGTTTTATGGCATCCTTGACAGTGGTATTTAATCCAACCTGAAA--G
i caeJap4.Scaffold18213  I 55 C 0

a score=-50845.000000
s ce10.chrX               2315838 446 + 17718866 ATTAGCATCAGTTATTTTTCTGGAAGTGTTTATTTGTTTATGCCGTCCTAATTGTATGCAGATATCGTATGTTGTAAATATTTCTCCAATAACAAGGTAATTTTGGATAATCCAAAA-------GTTCAATAGCCtatttattttatttat-----aaaaaacaaaattttaGCACAGGCTTTTAGACTTCGATACTGTATATATTTATATTTGCAGTTTGTTCATCTTCGCTAGTCATTTTCAA-AATTCATGTGATTTCTTAATAGGTACGTTGTTT-TTTTCCATGAAATTGCAAT------CGCCAAACTGTTTTCG-----------GGTAAATGTGAGGTTTGTTATTCGT---------TATTTGCAAAAAAGATCTCCAAGTGTTGTCAGTAAAATTTTTAGAAACAAT-----------AAGATCAGCACAACAGA-AGAGACGGCGCAAATTC-AATAACATAGTCAT-------TTTGAAGAGACTTCAGCCTGA
s caeRem4.Crem_Contig233    46112 327 -   113162 ----atatt-ttcacatGTGAACAATACTTTACTTTTATTTT--------------------GATCTGAGTTCatgtttt-----------------gaactttctt---ttcGATA-------Ataagat-------------tattttt------------------------------------------caattccagtcTCTA----------------ATTCTGTTTGATGATTTCTAA-AA-------------------------CCGTTA--------------TCGTAT---------CAAActgtttttg----tcttttatCTAAATTCCGGTTCTGTTATTCACCCTTTGCTGTATTTGCAGAA---ATCTCCAAGTGCTACCATTAGAGTTTACGCAGAGATTTTAAGTAACTCGAGACTACTACTCCTTACAGAGACGATCGACACTCAAACAATCGAGACATGTACCTACTGGAAGAGACATCAGTCAAT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      73396 338 -   128984 -----------------------aacatttcgtTTCTTTATTT-----------------GACATTAACTTTCATCATTA-----------------TCATCTTGAT-ACTTTGAATTCTAGTGGCTAGATA----------ACAATTAAT-----------------------------------------GCACTATACATCTTT---------------------CAATTAATGATCTCCAAGAAGTTTGGTCTTGAACTAATCACcacgtttttc----------aaactcttaT---------CGAACTGTTTTTT----CGTTGTTCCCCTATTCCGGTT-TGTTATTCTCATATT-CTGTATTTGCAGTA--TCTCTCCAACTGCTA-----GAAATTTTTGCAGAGAGCGTAAGAAACTCGAGACTACTCCTTCTGA-ATAGACGATCGACGTCG-AACAAGTGAGGTATGTGACTGGTGGAAGAGAC----GTGAGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3062958 353 -  4147112 ----------------------Taacattttgttcttttttt----------------------ttgttttctatagTTC-----------------GAACTTTGGTCGATTCGAAT-------gttagat-----------tttattttt-----------------------------------------gtactaATCGTCTCT----------------------GCTTTCTGATCTTTCA-AAACTTGGTCATAAATTAATCTACAAGTCATTCTATTTGTCTGAAATTCTTATCAATCATGACAAACTGTTTTTTACCCTCTCTCCCCTCTATTCCGGTTGTGTTATTCACATTTTGCTGTATTTGCAGAA--TCTCCTTGAGTACT------GAACTTATTGCAGAGAGGGTAGAAAACTGAAGACCACTACTCCAAA-AGAGACGATCGACGCTC-CACCACTGAGGCATGTTAATATTGGAAGAGACATCAGTGAGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     53645 215 +   720316 -------------------------ttgtttattttcttgtt-------------------GAGTTTACTCCCATTATCC-----------------TTATTTCC-----CCTGACT-------TCCAGAT-----------CTTTtcaattcgacaaaaaactgAGTT-----------------------CCGCCGTTTTTCCCGA--------------------CGCAGAAACACATTTAA-AA-----------------------------TC-----------------------------AAGACTGTTGTGC----------AAAAAGAGGCGAGCGACGTTCGTCAC---------------CCGAG----------------------------------------ATAGGTAGTTTGAAA------------A-AGAGGCGAC---------AGCA--TGAGATACGTTTTCAATGGA----------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17046313 1300 - 21540570 I

a score=232551.000000
s ce10.chrX               2316284 338 + 17718866 ATGATAACT---CCTGGCAA-TAG--------------AAATAGACAATAACAAAAAGGGCAG--------CCTGGAG---------GAG------------ACTCTCATGTGACCTTTGCAAAACTCGGCG-TGTCAGAGAC--TATTGTCCACGAGGAGAGCGCGATCTAGTGTAA----ACAGGCAGACG-TTGTTATTGG-GG-------AAAAAAGATCAATGGTCAA-CTTTTGATATTGTTTGAACCGGAA-GGTAAAGAAGATGTATGATCGTCGAATAAATCTGGATT-----------------CAGAA-----------ACACACCTTCAAAACGTCGTCGTTCCACGTGCCAATTTTCTTTTGATCCAGGGTGGCCTGTCGCACGTGAAGAAGAATTGCATCTCCAAAGTCGCTCTGAA-------
s cb4.chrX               17047613 365 - 21540570 ATGATAACTCCTCTCTCCAG-TAG--------------AAACAAATAATAACAAACAGGGCAAC---TCGACTCTGAA------------------------GGATTCATGTGACCTTTGCAAAACTCGGCA-TGCTAGAAATACTATTGAAGGTCGAGAG---GCAGTC-----TGC-CCGAC----------TTGTTATTGA-ggcacgaaaaaaaaagatcgtcggtcaa-tttttgatattgtttGAACCAGAAGGGTTAGGGTGGTTCTTGGTCGGCCA--CaatccggattttttttttctctctcaacactatttttttttcgacaaacCTTCAAGACGTCGCTATTCCACGTGCCAATTTTCTTCTGGTCCAATGTGGCCTGACGCACGTGAAGAAGGATGGCATCCCCAAAGTCgctctaaa-------
i cb4.chrX               I 1300 C 0
s caeRem4.Crem_Contig233    46439 377 -   113162 GTGATAACT-TTCTCTTCAGATAG--------------AAACACACAATAACAAAAAGGGCAAC---TCGActtggaaaagagaga-gagactgaAATGAGGAGACTCATGTGACCTTTGCAAAACTCGGCAGTGTCAGAGACACCGTTGTTAGCGGAGAGA--GCAGTCGAGCGTACGCCGACAGGCAGACTTTTGTTATTGA-GG-------AAAAAAGATCGacggtcaattttttgatattgtttGAACCAGAA-GGTAAAAGTGGTTCTTGGTCGTCCA--GAATCCGGATTTTTT-----------GACACAA-----------ACAAACCTTCAAGACATCGCCATTCCACGtgccaattttcttttgatcGAGGGTTGCCTGACGCACGTGAAGAAGAATTGCATCTCCAAAATCACTCTGAA-------
i caeRem4.Crem_Contig233 C 0 I 33
s caeSp111.Scaffold576      73734 354 -   128984 ATGATAACC-CTCTT-CCAA-TAG--------------AAACACACAATAACAAAAAGGGCAAC---TCGACTTGGAG---------GAG------------AGACTCATGTGACCTTTGCAAAACTCGGCA--GTTAGAGAT--TATGGTCAGTGAAGAGA--GCAGTCGAGCGTACACCGACAGGCAGACT-TTGTTATTGAGGG-------AAAAAAGATCGACggtcaa-tttttgatattgtTTGAACCAGAA-GGTGAATGTGGTTCTTGATCGTTCG--GAATCcggattt-------ttggaaagacACAA-----------ACAAACCTTCAAGACATCGCCATTCCATGTGccaattttcttctggtCCAAGGTGGCCTGACGCACGTGAAGAAGAATTGCGTCTCCAAAGTCGCTCTAAA-------
i caeSp111.Scaffold576   C 0 I 46
s caePb3.Scfld02_0        3063311 367 -  4147112 ATGATAACT-CCCTTGCCGA-TAT--------------AAACACACAATAACAAAAAGGGCAAC---TCGTCTTGGAAGAGAGAGATGAG------------AGACTCATGTGACCTTTGCAAAACTCGGCA--GTTAGAGAT--TATTGTCATTCGAGAGA--GCAAGCGGGTATACACCGACAGGCAGACC-TTGttattga-gg-------aaaaaagatcgacggtcaa-tttttgatattgtttGAACCAGAA-GGTAAAAGTGATTCTTGGTCGTTCA--GAATccggatttttt---cttttcactacACAA-----------ACAAACCTTCAAGACGTCGCTATTCCATGTGCCAATTTTCTTCTGGTCCAAGGTAGCCTGACGCACGTGAATAAGAATTGCATCTCCGAAGTCACTCTAAA-------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     53860 359 +   720316 -----AACC---CTGGGCAG-CATCGGCGCAGCGCAGCAGTCGCACAATAACAAAAAGGGCAACAAATCGA----GAA---------ACG------------AGAGGCATGTGACCTTTGCAAAACACAGCG--CCAAGAGAC--TGGTGAAGAGCGAGAGA--GCGACCCATCGTGGACCGAC----------TTGTTATTGA-GG--------AAAAAGACCGACGGTCAA-TTTTTGGCGCTGTTTAAACCAGAA----AATGGTGGTTTTCGGTTCCCCG--ATTTCTGGCTCTCCT--TCTCTAATTCATTCTC-----------AcgtactttcaaaacgtctccgTTCCACGTGCCAATTCGTTTTTGTTCCAGTGTTGCTTGGCGCACGTGAAGTAGAATTGCATCTCCAAAGTCGCcctggaaattgaa
i caeJap4.Scaffold18213  C 0 C 0

a score=546.000000
s ce10.chrX               2316622 1 + 17718866 A
s cb4.chrX               17047978 1 - 21540570 a
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3063678 1 -  4147112 A
i caePb3.Scfld02_0       C 0 I 125
s caeJap4.Scaffold18213     54219 1 +   720316 a
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      74088 46 -   128984 I
e caeRem4.Crem_Contig233    46816 33 -   113162 I

a score=273.000000
s ce10.chrX               2316623 1 + 17718866 A
s cb4.chrX               17047979 1 - 21540570 a
i cb4.chrX               C 0 I 36
s caeJap4.Scaffold18213     54220 1 +   720316 a
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3063679 125 -  4147112 I
e caeSp111.Scaffold576      74088 46 -   128984 I
e caeRem4.Crem_Contig233    46816 33 -   113162 I

a score=523.000000
s ce10.chrX               2316624 8 + 17718866 ACAATTTA
s caeJap4.Scaffold18213     54221 8 +   720316 acatttta
i caeJap4.Scaffold18213  C 0 I 4
e caePb3.Scfld02_0        3063679 125 -  4147112 I
e cb4.chrX               17047980 36 - 21540570 I
e caeSp111.Scaffold576      74088 46 -   128984 I
e caeRem4.Crem_Contig233    46816 33 -   113162 I

a score=0.000000
s ce10.chrX               2316632 623 + 17718866  
e caePb3.Scfld02_0        3063679 125 -  4147112 I
e caeJap4.Scaffold18213     54229   4 +   720316 I
e cb4.chrX               17047980  36 - 21540570 I
e caeSp111.Scaffold576      74088  46 -   128984 I
e caeRem4.Crem_Contig233    46816  33 -   113162 I

a score=740.000000
s ce10.chrX               2317255 18 + 17718866 ATATACAAAAACCAAAAA
s caeJap4.Scaffold18213     54233 18 +   720316 ATTTCCAAGAATTAAAAG
i caeJap4.Scaffold18213  I 4 C 0
e caePb3.Scfld02_0        3063679 125 -  4147112 I
e cb4.chrX               17047980 36 - 21540570 I
e caeSp111.Scaffold576      74088 46 -   128984 I
e caeRem4.Crem_Contig233    46816 33 -   113162 I

a score=273.000000
s ce10.chrX               2317273 1 + 17718866 T
s caeRem4.Crem_Contig233    46849 1 -   113162 T
i caeRem4.Crem_Contig233 I 33 C 0
s caeJap4.Scaffold18213     54251 1 +   720316 T
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3063679 125 -  4147112 I
e cb4.chrX               17047980 36 - 21540570 I
e caeSp111.Scaffold576      74088 46 -   128984 I

a score=1000.000000
s ce10.chrX               2317274 1 + 17718866 C
s caeRem4.Crem_Contig233    46850 1 -   113162 C
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      74134 1 -   128984 C
i caeSp111.Scaffold576   I 46 C 0
s caePb3.Scfld02_0        3063804 1 -  4147112 C
i caePb3.Scfld02_0       I 125 C 0
s caeJap4.Scaffold18213     54252 1 +   720316 C
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17047980 36 - 21540570 I

a score=78422.000000
s ce10.chrX               2317275 85 + 17718866 TTACCAATTTCAGAACTGTTTCCTGAAGAATCATACGTGGAGTCAAGAAGTACAGTGGAGTCCCCGGCTTTGGAATGATCTGAAA
s cb4.chrX               17048016 85 - 21540570 TTACCAATTTGAGAACAGTCTCCTGCAAAATCATTCGAGTGGTCAAGAAGAACAATGGAGTACCTGGTTTtggaacaatctgaaa
i cb4.chrX               I 36 I 35
s caeRem4.Crem_Contig233    46851 85 -   113162 TCACCAGTTTGAGAACAGTCTCCTGAAGAATCATACGAGTTGTCAAGAAGAACAGTGGTGTCCCTGGCTTTGGAATAATCTGAAA
i caeRem4.Crem_Contig233 C 0 I 4
s caeSp111.Scaffold576      74135 84 -   128984 TCACCAGTTTAAGAACAGTCTCCTGTAGAATCATACGAGTagtcaagaaaaacaatggtGTTCCGGGTTTTggaataatctgaa-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3063805 85 -  4147112 TAACCAATTTGAGCACTGTTTCTTGCAAGATCATGCGAGTTGTCAAGAAGAACAACGGAGTTCCTGGCTTTGGAataatctgaaa
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     54253 85 +   720316 CTACCAGTTTCAACACCGTTTCTTGAAGGATCATACGGGTGGTTAGGAAGAAGAGAGGTGTTTCTGGTTTTGGGATTATCTGAAA
i caeJap4.Scaffold18213  C 0 C 0

a score=29.000000
s ce10.chrX               2317360 1 + 17718866 T
s caeRem4.Crem_Contig233    46940 1 -   113162 T
i caeRem4.Crem_Contig233 I 4 C 0
s caeJap4.Scaffold18213     54338 1 +   720316 C
i caeJap4.Scaffold18213  C 0 I 26
e caePb3.Scfld02_0        3063890 0 -  4147112 C
e cb4.chrX               17048101 35 - 21540570 I
e caeSp111.Scaffold576      74219 0 -   128984 C

a score=-3804.000000
s ce10.chrX               2317361 37 + 17718866 TAC---ATAGTTA----ATTACTTCCCACCACGTGCTAACTGTC
s caeRem4.Crem_Contig233    46941 35 -   113162 AACATGACAATtctaatgttatttttcagtctcCA---------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      74219 35 -   128984 ------aatatcc---cgttcattttcgttttctgcCAGCCTTC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3063890 35 -  4147112 ----tgaaaattc-----tttcttttctttgttcactttccttt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     54339 26 +   720316 I
e cb4.chrX               17048101 35 - 21540570 I

a score=-239.000000
s ce10.chrX               2317398 5 + 17718866 TAACA
s caeSp111.Scaffold576      74254 3 -   128984 TT--A
i caeSp111.Scaffold576   C 0 I 6
s caePb3.Scfld02_0        3063925 5 -  4147112 tttca
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     54365 5 +   720316 TTACA
i caeJap4.Scaffold18213  I 26 C 0
e cb4.chrX               17048101 35 - 21540570 I
e caeRem4.Crem_Contig233    46976 0 -   113162 C

a score=88551.000000
s ce10.chrX               2317403 80 + 17718866 CACCGTATCAAAAATCGGAACGAAGCTAATTTTGTTGTGTGAGATGATATTGGCAGCTTCCCAGACGCTGCAAAAAACAA
s cb4.chrX               17048136 80 - 21540570 TACCGTATCGAAAATTGGGATGAAGCTAATTTTGTTGTGTGAGATGATATTGGCAGCCTCCCAGACGCTGCAGAACAAAT
i cb4.chrX               I 35 C 0
s caeRem4.Crem_Contig233    46976 80 -   113162 TACCGTATCAAAAATCGGAATGAAGCTAATTTTGTTGTGTGAAATGATATTAGCAGCTTCCCAGAcgctgcaaaaaaaaa
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      74263 78 -   128984 TACCGTATcgaaaattggaatgaagCTAACTTTGTTGTGCGAGATGATATTAGCGGCTTCCCATACGCTGCAAAt--aaa
i caeSp111.Scaffold576   I 6 C 0
s caePb3.Scfld02_0        3063936 80 -  4147112 taccgtatcgaaaattggaatgaagCTAACTTTGTTGTGTGAGATGATATTAGCGGCCTCCCAGACGCtgcaaataaaaa
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213     54370 80 +   720316 CACCGTATCAAAAATGGGGATGAAGCTCAATTTGTTGTATGTGATGATATTAGCAGCTTCCCAGACGCTGCAaagagaaa
i caeJap4.Scaffold18213  C 0 I 66

a score=-3124.000000
s ce10.chrX               2317483  76 + 17718866 CAACTTA----------------TTGGTCCCCTG---------------TTTC-AAATCACAGC-GGCGG------CTATTCAGCAAC--------ATGGTGGAAGAAGGAGG-----------------CAAGTTGTTT
s cb4.chrX               17048216 125 - 21540570 TGTTTTTATTAGAGCCCctattttcattctttttttttctttttttccggttC--AATTACAACTGATGG------GTCTCCAGTAGc-------atgaaaaaacacaaaacgccccccccccccgggTTCTGGTTGTTT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    47056  85 -   113162 cacatgt-----------tATATTCGGTCCCTTT----------------------AGCCCAATTGATGGGTAGCAGTCTCCAGT-----------TGAAAAGGGGGAAGAGG-----------GGGGTTCTGGTTGTTT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      74341  98 -   128984 tctctct-----------tttttctggtcccttg---------------ttccaaaaaaacagCTGATGT------GTCTCCAAtagataa----aagagaaaaaagagggag------gagAGAGGTTCTGGGTTGTTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3064016 100 -  4147112 acacata-----------tttttcTGGTCCCTTG---------------GTTC--AATTACAATTGATGA------GTCTCCAAGAGcgaaggaggagaaaaaaaggaggggg------gggggggggttctAGTTGTTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     54450  66 +   720316 I

a score=347065.000000
s ce10.chrX               2317559 840 + 17718866  
s cb4.chrX               17048341 778 - 21540570  
i cb4.chrX               C 0 I 22
s caeRem4.Crem_Contig233    47141 869 -   113162  
i caeRem4.Crem_Contig233 C 0 I 18
s caeSp111.Scaffold576      74439 793 -   128984  
i caeSp111.Scaffold576   C 0 I 13
s caePb3.Scfld02_0        3064116 813 -  4147112  
i caePb3.Scfld02_0       C 0 I 13
s caeJap4.Scaffold18213     54516 804 +   720316  
i caeJap4.Scaffold18213  I 66 C 0

a score=0.000000
s ce10.chrX               2318399 28 + 17718866 CAAAACGAACTTaaaggattaaaggatt
e caePb3.Scfld02_0        3064929 13 -  4147112 I
e caeJap4.Scaffold18213     55320  0 +   720316 C
e cb4.chrX               17049119 22 - 21540570 I
e caeSp111.Scaffold576      75232 13 -   128984 I
e caeRem4.Crem_Contig233    48010 18 -   113162 I

a score=-3173.000000
s ce10.chrX               2318427 46 + 17718866 aaagaacgatccgttcttcaacggctgtgcactgcggctctgggag-
s caeSp111.Scaffold576      75245  6 -   128984 ----------------------------------------tgAGAG-
i caeSp111.Scaffold576   I 13 C 0
s caeJap4.Scaffold18213     55320 14 +   720316 -agGAACT--------------------------------CGATGGC
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3064929 13 -  4147112 I
e cb4.chrX               17049119 22 - 21540570 I
e caeRem4.Crem_Contig233    48010 18 -   113162 I

a score=-2438.000000
s ce10.chrX               2318473 97 + 17718866 tcaagtgctcccactgggctttaatttaagccatgtcgtagccggggtcgataatcttagtcgtggattgctccacttcctaatagtggctccggac
s caeJap4.Scaffold18213     55334 12 +   720316 -----------------ATTTtgattaaa--------------------------------------------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3064929 13 -  4147112 I
e cb4.chrX               17049119 22 - 21540570 I
e caeSp111.Scaffold576      75251  0 -   128984 C
e caeRem4.Crem_Contig233    48010 18 -   113162 I

a score=-1570.000000
s ce10.chrX               2318570 37 + 17718866 ttgaactcgtgacctccagattgctagcggccaccac
s caePb3.Scfld02_0        3064942  5 -  4147112 ttgaa--------------------------------
i caePb3.Scfld02_0       I 13 C 0
s caeJap4.Scaffold18213     55346  4 +   720316 -tgaa--------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17049119 22 - 21540570 I
e caeSp111.Scaffold576      75251  0 -   128984 C
e caeRem4.Crem_Contig233    48010 18 -   113162 I

a score=0.000000
s ce10.chrX               2318607 36 + 17718866 taccgactgagctattcacccccCCCCCCCCCCGCA
e caePb3.Scfld02_0        3064947  0 -  4147112 C
e caeJap4.Scaffold18213     55350  0 +   720316 C
e cb4.chrX               17049119 22 - 21540570 I
e caeSp111.Scaffold576      75251  0 -   128984 C
e caeRem4.Crem_Contig233    48010 18 -   113162 I

a score=-562.000000
s ce10.chrX               2318643 17 + 17718866 CAAATGTTTAATTATTA
s caeRem4.Crem_Contig233    48028 10 -   113162 taattgttcA-------
i caeRem4.Crem_Contig233 I 18 C 0
s caeSp111.Scaffold576      75251 10 -   128984 CAATTATTTA-------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3064947  9 -  4147112 -aaaagttta-------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     55350  8 +   720316 -aaaaatta--------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17049119 22 - 21540570 I

a score=59461.000000
s ce10.chrX               2318660 77 + 17718866 CTCACCAAAAGCTGAGAGAACTTCATAAGCA-CCTTCGTTGCTAAATATCCGGCATGGACGCATGATGGCGAAATCCT
s cb4.chrX               17049141 77 - 21540570 CTTACCAAATGCCGAGAGCACTTCATAGCCG-CCTTCTGTGTTGAAAATTCTGCATGGACGCATAATAGCGAAATCCT
i cb4.chrX               I 22 I 290
s caeRem4.Crem_Contig233    48038 75 -   113162 --TACCAAATGCCGAGAGCACTTCGTATGCG-CCTTcgttgctgaaaattcgacATGGACGCATAATAGCGAAATCCT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      75261 76 -   128984 --TACCAAAAGCCGAAAGCACTTCGTAGGCTACCTTCAGTGTTGAATACACGGCATGGCCTCATGATTGcaaaatcct
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3064956 75 -  4147112 --taccGAATGCTGAAAGCACTTCATACGCT-CCTTCAGTGTTGAAAACTCTGCATGGTCTCATAATTGCAAAATcct
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     55358 73 +   720316 ----ctaAATGCGGATAACACTTCGTAAGCT-GACTCGTTGCTGAACACCCGGACAGGGCGCATAATTGCAAAATcct
i caeJap4.Scaffold18213  C 0 C 0

a score=1350.000000
s ce10.chrX               2318737 4 + 17718866 GAAA-
s cb4.chrX               17049508 4 - 21540570 gaaa-
i cb4.chrX               I 290 C 0
s caeRem4.Crem_Contig233    48113 4 -   113162 GAAA-
i caeRem4.Crem_Contig233 C 0 I 33
s caeSp111.Scaffold576      75337 4 -   128984 tcaa-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3065031 4 -  4147112 gaaa-
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     55431 5 +   720316 gaaaa
i caeJap4.Scaffold18213  C 0 C 0

a score=-10021.000000
s ce10.chrX               2318741 30 + 17718866 T---------------A-----GAAATGTATTA-------AAAAT-----TAGTTAGTCCAG
s cb4.chrX               17049512 44 - 21540570 tcggcaaatagctggaa-----aaaactcgata-------a-aaa-----tagtcaaaatgg
i cb4.chrX               C 0 I 71
s caeSp111.Scaffold576      75341 29 -   128984 ----------------a-----aaagttgaact-------atgaa-----tagaaaaagaag
i caeSp111.Scaffold576   C 0 I 10
s caePb3.Scfld02_0        3065035 39 -  4147112 ----------------actcagaaaacttAACA-------ATAAAACCCCTAATAAAAGAGC
i caePb3.Scfld02_0       C 0 I 1
s caeJap4.Scaffold18213     55436 34 +   720316 -------------------tagaaaatgtgACGTTATTCCAAAAA-----CATTACAG----
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    48117 33 -   113162 I

a score=257693.000000
s ce10.chrX               2318771 580 + 17718866  
s cb4.chrX               17049627 698 - 21540570  
i cb4.chrX               I 71 C 0
s caeRem4.Crem_Contig233    48150 687 -   113162  
i caeRem4.Crem_Contig233 I 33 C 0
s caeSp111.Scaffold576      75380 655 -   128984  
i caeSp111.Scaffold576   I 10 C 0
s caePb3.Scfld02_0        3065075 666 -  4147112  
i caePb3.Scfld02_0       I 1 C 0
s caeJap4.Scaffold18213     55470 722 +   720316  
i caeJap4.Scaffold18213  C 0 I 2863

a score=41733.000000
s ce10.chrX               2319351 1372 + 17718866  
s cb4.chrX               17050325 1097 - 21540570  
i cb4.chrX               C 0 I 16
s caeRem4.Crem_Contig233    48837 1229 -   113162  
i caeRem4.Crem_Contig233 C 0 I 10
s caeSp111.Scaffold576      76035 1097 -   128984  
i caeSp111.Scaffold576   C 0 I 23
s caePb3.Scfld02_0        3065741 1243 -  4147112  
i caePb3.Scfld02_0       C 0 I 5
e caeJap4.Scaffold18213     56192 2863 +   720316 I

a score=-450.000000
s ce10.chrX               2320723 8 + 17718866 GG-AGAACT
s cb4.chrX               17051438 9 - 21540570 GTCCTGATT
i cb4.chrX               I 16 C 0
s caeRem4.Crem_Contig233    50076 8 -   113162 GT-TTGATT
i caeRem4.Crem_Contig233 I 10 C 0
s caePb3.Scfld02_0        3066989 8 -  4147112 CT-CTGACT
i caePb3.Scfld02_0       I 5 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e caeSp111.Scaffold576      77132 23 -   128984 I

a score=23948.000000
s ce10.chrX               2320731 118 + 17718866 ACAATTAAATCAGAGAGTGAGAT------AGTGAGTA--GAGAT-----TC-AGAAATCCTTTTGATGAAAAAATGAAAAACTGAAATTGATAACAACAAAA-----AATAAGATGGAAGAGG-----AGGGAGGGCGAGGT-----------
s cb4.chrX               17051447 131 - 21540570 GCAATTAATAC--ACGTTGAGGGCGGAGAAATGGAAGTTGAgagcgaaaaa-aagaatcc---TGATGG-GGTTGGAAAGACTGAAAATGATAACAACAGAAGaacgaac-------aaaaaatagaTAGATGGATGGAAGAGGT--------
i cb4.chrX               C 0 I 1608
s caeRem4.Crem_Contig233    50084 106 -   113162 GCAATTAATAC--ACGTTGGGTT------AGTGGGAG--GAGAG---ACaa-aaaaaTCC---TGATGG-----AAAAGAACTGAAATtgataacaacaaaa-----aat-------aagagg-----agAAGGGCTGAGACGAC--------
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      77155 105 -   128984 TCAATTAAAAC--ACGTTGAGAT------AGtgggag--gagag-----aa-aaaaatcc---tgATG--------AAAGACTGAAATTgataacaaagaa------aa----------aatg-----agagagggTAAGGTAATGGGTAGGT
i caeSp111.Scaffold576   I 23 C 0
s caePb3.Scfld02_0        3066997 110 -  4147112 GCAATTAAAAC--ACGTTGAGAT------AGTGGgag--gagag-----aaggaaaatcc---tgatga-------aaaaactgaaattgataacaacaaa------aat-------aggAGG-----AGAGAAGGTAAGGTAATGGGTGGGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I

a score=12121.000000
s ce10.chrX               2320849  92 + 17718866 GGAGCGTT----GACAAAATATCATTGAGAGGTATGAGGCA--------CGTTGCCGAAGTGGCAAAGATCAACGGAGGAGGCGGGC--TGAAAATGTGAACCAAA-
s caeRem4.Crem_Contig233    50192  83 -   113162 GGAGAAGA------------GGTATGCGGGTGAATGTAGT---------AGTGGTGGTAGTGGCAAAGATCAAGTGGGGCGG-AGAC--TGGAAGGTTCGATCAAAA
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      77260 105 -   128984 GAAGAGTAGGAGGAGACAGAGGTATGCGTGCGTATGTGTTATGTGTTTGTGAGGCGGTAGTGGCAAAGATCAAGCGGGGCGG-GAACAATGGGAGGTTAGATCAAA-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3067107  87 -  4147112 GAAGGGTA----GAGAC---GACATGAAGAGGTATGTGTT---------TGGGGCGGTAGTGGCAAAGATCAACCGGGGCGG-GAAC--TGGaagagtagatcaaa-
i caePb3.Scfld02_0       C 0 I 1201
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I

a score=-21517.000000
s ce10.chrX               2320941 377 + 17718866  
s caeRem4.Crem_Contig233    50275 452 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      77365 415 -   128984  
i caeSp111.Scaffold576   C 0 I 52
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I

a score=764.000000
s ce10.chrX               2321318 46 + 17718866 aaagaaaaagtcaagataaatgcaaataacaggcaaaaaaaaacga
s caeRem4.Crem_Contig233    50727 46 -   113162 CAGAAAAGGAACATGAAAGATTTTCAGGCTAGACAAAGAGAAATGA
i caeRem4.Crem_Contig233 C 0 I 25
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I
e caeSp111.Scaffold576      77780 52 -   128984 I

a score=0.000000
s ce10.chrX               2321364 10 + 17718866 aggaacgttt
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I
e caeSp111.Scaffold576      77780 52 -   128984 I
e caeRem4.Crem_Contig233    50773 25 -   113162 I

a score=558.000000
s ce10.chrX               2321374 20 + 17718866 ttacatgactt-caaacctga
s caeSp111.Scaffold576      77832 21 -   128984 TTTTAGGACTtgtaaaactga
i caeSp111.Scaffold576   I 52 C 0
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I
e caeRem4.Crem_Contig233    50773 25 -   113162 I

a score=-8605.000000
s ce10.chrX               2321394 153 + 17718866 acagattcacgctggtcaagcagcttttaatcgaaaat--ttgcatttatcttgacttttacttcaaatttcatgcactgaaaatatgaaaaatt---------------ggtggaaaatctg---aaaaaaataaggcagaaactgagat-------------tttttcaatttt-----------caaaaaaaaa---
s caeRem4.Crem_Contig233    50798 140 -   113162 ----------actgG----CCCCTCCCCATCCAGCACT--TTTCA----ACCCAATTGTCTATTCC--------------GAAAAAAGGAAGACT---------------GCCGAGAATGACG---AATGCGAACAAGAACCA--TGGCAGCGTGCATCT----CTTCTCGTTTTG--CGATGACGCCAACAGAAAGAAG
i caeRem4.Crem_Contig233 I 25 C 0
s caeSp111.Scaffold576      77853 182 -   128984 --aaat---aacttgaaaaacttttttttgctagAACTCATTTCGT---TCTCTATTTCTTGTTCTTGTTT-------TGAGAACATAAAAGATTTACAGAATacacaaagaaaagaagcacGTGCAAAgcgaaaataaataaattggTACCACCCAACCAGCACTTTTCAATCTAATTgtctattccaaaaaaaca---
i caeSp111.Scaffold576   C 0 I 140
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I

a score=-1894.000000
s ce10.chrX               2321547 166 + 17718866 atca-tatacaattttaaaaatgtattttaaaatttttattacgatatttggtcattgtggtaccattggcgctactccacctttaaATGGAATTTCTCCTATATCTTAGAAATCAACGCTGTGCATATTAAAAATTCTGAGCATTTTTTGTACTACTATAGAGAAA
s caeRem4.Crem_Contig233    50938  82 -   113162 AACAGTATATAA----AAAAGTG---------------------------GGAGATTTTGG-------------------------AATGAGATTCCCC-----------AAGTCCAGG-----------AAAAAATCT---CGTTTTC----CTGTTTTGGAATAG
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I
e caeSp111.Scaffold576      78035 140 -   128984 I

a score=-24.000000
s ce10.chrX               2321713 64 + 17718866 ---TAATATCTTA-TTATTGTGCACCTGTTTGGTT-----GTAGACAAATTTAAAAATAGGTCTTATTCTGCC-----------------------
s caeRem4.Crem_Contig233    51020 95 -   113162 GAGTTCTGTATTACCTTTTGTacatattttcatttaatcAGCAGAC-AGGTTAAAAATAGACTTTGTTTAGTAAAGAAACGAAATGATTCGAGGAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      78175 88 -   128984 ---tactgtttttgtttttg-aaaccttttAGGTTAGTC-GAAGAG-AACTTATAAATAGA--TTGGTATATAGGAAAACGAAGTGAATCAAGAAA
i caeSp111.Scaffold576   I 140 C 0
e caePb3.Scfld02_0        3067194 1201 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I

a score=4260.000000
s ce10.chrX               2321777 13 + 17718866 AGTCACCAGTGCC
s caeRem4.Crem_Contig233    51115 10 -   113162 AGTCACCAGT---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      78263 10 -   128984 AGTCACCAGT---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3068395 10 -  4147112 AGTCACCAGT---
i caePb3.Scfld02_0       I 1201 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17051578 1608 - 21540570 I

a score=43130.000000
s ce10.chrX               2321790 98 + 17718866 CGGAGAATACAATAACAGGGTGACTGAGATTGCATGTAGAAGAAAAGGGGAGG----AGGTCTGCAAGATGGAACCCATCG--CGCCCTCC-ACGGCTGGCCGAC
s cb4.chrX               17053186 93 - 21540570 CGAAAAATACAATAACAGAATGGAAGAGATTGCAAG------AAGAGTACTGC----AAGA-AAAAAGACGGAACCCATCAACTGCCCTCC-ACGGCCaaccgac
i cb4.chrX               I 1608 C 0
s caeRem4.Crem_Contig233    51125 96 -   113162 CCGGCAATACAATAACATATTGGCAAAGATTGCAAGT---AAAAGAGGGTTGG----AGGATTGCAAGATGGAACCCAGCG--CGCCCTCCTACAGCCGACAGAC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      78273 97 -   128984 CCGGCAATACAATAACAAAGTGGCAGAGATTGCAAGT-----AAAATGTGAGGCAAAAGGACTGCAAGATGGAACCCATCG--CGCCCTCC-TCGGCCGTCCGAC
i caeSp111.Scaffold576   C 0 I 106
s caePb3.Scfld02_0        3068405 89 -  4147112 CCGGCAATACAATAACAGAGTGGCAGAGATTGC---------AAAGTAAGAGG----AGGACTGCAAGATGGAACCCAACG--CGCCCTCC-ACGGCCGACCGAC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I

a score=1173.000000
s ce10.chrX               2321888 4 + 17718866 CGAC
s cb4.chrX               17053279 4 - 21540570 cgac
i cb4.chrX               C 0 I 88
s caePb3.Scfld02_0        3068494 4 -  4147112 CGAC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e caeSp111.Scaffold576      78370 106 -   128984 I
e caeRem4.Crem_Contig233    51221 0 -   113162 C

a score=3822.000000
s ce10.chrX               2321892 28 + 17718866 ACTACCCGCTcacacacacacacacaca
s caeRem4.Crem_Contig233    51221 28 -   113162 ACTACTCGCACAAACAACTATTTGTATG
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3068498 28 -  4147112 ACTACTCGCACAAACAACTATTTGTATG
i caePb3.Scfld02_0       C 0 I 47
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053283 88 - 21540570 I
e caeSp111.Scaffold576      78370 106 -   128984 I

a score=-1746.000000
s ce10.chrX               2321920 11 + 17718866 --------------------------------------cacacacacac
s caeRem4.Crem_Contig233    51249 49 -   113162 GGGCTGTGTTGCGTTCGTTTTAGTTTCTATGTGTGTTTTTCTTCCGACG
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3068526 47 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053283 88 - 21540570 I
e caeSp111.Scaffold576      78370 106 -   128984 I

a score=3544.000000
s ce10.chrX               2321931 22 + 17718866 acacacacGTGGTCTTTTTTCC--
s caeRem4.Crem_Contig233    51298 21 -   113162 ACACACAcgtggttctttttt---
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3068573 24 -  4147112 ACACACACGtggttccttttttct
i caePb3.Scfld02_0       I 47 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053283 88 - 21540570 I
e caeSp111.Scaffold576      78370 106 -   128984 I

a score=-1386.000000
s ce10.chrX               2321953 34 + 17718866 TGCCTCCTTCCTCAAATG--------------TTTTGCGACGAATATC
s cb4.chrX               17053371 48 - 21540570 tgtgtttttctttcaacAACACGTGGTCttttttttGCCGAGAGTATC
i cb4.chrX               I 88 C 0
s caeRem4.Crem_Contig233    51319 13 -   113162 --------------------------------ttttgc---gagTATC
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3068597 12 -  4147112 -------------------------------tttttgc---gaGTA--
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e caeSp111.Scaffold576      78370 106 -   128984 I

a score=38867.000000
s ce10.chrX               2321987 136 + 17718866 TCCA-CCACATTGCTCTTCTGACGCCGCCCAGCCCCTTCCCCCCCCCCCCCCCCAAATTGTTACACCAGTTATCGAGACATATGGC-AAATGAGAAAGGGGAGGA--A--GACGGCA--TGGAAGAGTAGGAAAGGTGTTTTTC
s cb4.chrX               17053419 106 - 21540570 --TGCTCTTCTTGCTCTTCGGACTCcgcctc-----------caaaactttcacGAATTGTTACACC--------AGACATGTGGC-AAATGAGA------------ATTGATGGCAGTGAGATGAG----AAAggtgtttttc
i cb4.chrX               C 0 I 1397
s caeRem4.Crem_Contig233    51332 103 -   113162 --CA-TCACATTGCTCTTCTAACGCCGCCCC-------------------TCCCAAGTTGTTACACCAGTTATCTAGACATGTGGCAAAATGAAA------------A--GATGGCAAAAAGATGAG-----ACGGTGTTTTTC
i caeRem4.Crem_Contig233 C 0 I 613
s caeSp111.Scaffold576      78476 112 -   128984 TCCA-TCACATTGCTCTTCTAATGCCACCC--------------------CTCCAAATTGTTACACCAGTTATTGAGACATGTGGT-AAATGAGATGGGGAGGAGATG--GATGTCATTAAGAAAAG--------gtgtttttc
i caeSp111.Scaffold576   I 106 C 0
s caePb3.Scfld02_0        3068609 109 -  4147112 TCCA-TCACATTGCTCTTCTGACGCCGCCCA-------------------TTCCAAATTGTTACACCAGTTATCGAGGCATGTGGC-AATTGAGATGGGAGGTAA--G--AATGACA--GAGAAGAG--------ATGTTTTTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I

a score=-1508.000000
s ce10.chrX               2322123  8 + 17718866 CA---------------------------GCAAAA
s caeSp111.Scaffold576      78588  8 -   128984 ag---------------------------gaaaaa
i caeSp111.Scaffold576   C 0 I 698
s caePb3.Scfld02_0        3068718 35 -  4147112 AGAGTAAGAAAAGTTCTCATGAAATTCTCGAAGAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=-1723.000000
s ce10.chrX               2322131 215 + 17718866 --------AAAATAGATATTGCTC---------------------------------------------------------TCGGAGCACGCATTCC----GAGAATAATTTCAAACG---GATATATGGGTCGGAAGCA---GTCGGGGGGAAATTAAAAATGTGGTCAATTTGGAAATAATCAAAATAATAAA------------------AAAGTTTTGAA------TTGAGGATATATTTATGGAAATTGAGTGTGTCTTTTTTGAATTTGGAAGATAAACACTTACTTGATTTCATT--------TTTCAAAAAAAA
s caePb3.Scfld02_0        3068753 307 -  4147112 CCTACCCTGATGCATCTACTGCTCAGACCGAAAACTATGATCTTTCAGctgttttgtaaatttttcaggataaaacAATTGTTGGAACACTTATTCCCGTTGAGAAAGATTT-AAATGTTTAAGATAAGTGTCAAATACTTCTGTAGAAGGTActtcaaaaatgggaaagcTTCCAAATCTATTCAGACAAAAAGTGGTTCCACTGCATCCctaaggttttgaaaatgactaGAATAGAAACTTC-----ATTGAGCATTTCATCT---------GAAGATTGAAATGTACAGTATTGTAACAAagctgatttcagaaaata
i caePb3.Scfld02_0       C 0 I 177
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=0.000000
s ce10.chrX               2322346 157 + 17718866 AAACCAACAACTAGTATTTACCAATGTGACTTTTAATTAAAAAAACACAAAATCCTAATTTGAACCAAGTTTGGCAGATTTTCTCGAAACTTAACTATTAGAGTTGAGTGATCACACTGAGTCACTTTTTTTTCTGGTTTTTCGAGTGTTCTAGAAA
e caePb3.Scfld02_0        3069060 177 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=92.000000
s ce10.chrX               2322503 198 + 17718866 CAAAAAGTTTAAAAAC-TGG-CAAGTCATTAGTTTTTGTTATTATCAGAGCATACTTTAAACATTCACAAAAAGCAAATCGAAATTTTGAGAGAAAAATTTTTCGTTTCTGAAGATCAATTCAATTGAAAGTGGAGTAACGCC-------------AATGGGCATTTTTTTA-------------ACcaaagcgactaaatatcagaata-----aaacactccaaaaaac
s caePb3.Scfld02_0        3069237 198 -  4147112 caaaagttatgaaaatgtgGTCGACTGAAGAAATCttg-----agcaaaacat--tttaaacattca------attagttgaaacctt----------tttgatatttctaaaGAT----------GACCGTAAAATAGCGCTCTGAACATGTCGTACtgggtgtccttctattatagttaTATTATTACATATGCCTAGCACTAGAATATGATGGAATACTTGGATAAAC
i caePb3.Scfld02_0       I 177 I 46
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=0.000000
s ce10.chrX               2322701 39 + 17718866 tttagattctttaaaaaatgctcaggaaaatttttggca
e caePb3.Scfld02_0        3069435 46 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=-22.000000
s ce10.chrX               2322740 229 + 17718866 catt-gcca-aattttcgaaaaaaaagttcgcgaattcagagcaataatgtatgttccgtttcctagaatgttttaacacaaacaatgttaatac--aattaaaatattaaaatagtgggaaaatgtttttgggtcgacttccagaatta--------tgaattgcaaaaactgagtacatactaatcccttttagcaagtaaacaaaaatttttttaaaagttattaataagacatttgg
s caePb3.Scfld02_0        3069481 208 -  4147112 CATTCGCTATAATAGTCTTACAAAGGGTTC----CTCCAGAAAAAGAGTTTGTACT---TTTGTTACAGTCTTTCCAGAACATCAACGTTGATGTTTACTTCACACATTAACCTTAT-----AATTCTCTAGTTTCTTATTCTAAACTTACATCAAAGTGTATt-cagaaatcgagaaaa--------------acaaaatgaaaaacaattc------agaTTATTATCATCTTATTTGG
i caePb3.Scfld02_0       I 46 I 234
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=0.000000
s ce10.chrX               2322969 242 + 17718866 tcattttTTCCCCACTGGCGTTACTCAACCTTTCCTGAGAACAAATTATGTTTCAAAGTTTGACAGTTTGACAAATTTTTAACTACAAAAAAAAACGTCAGTTTTCCGTTTTGATTTTTAGTCATTTGTTTTTGGAGATTTTCATTTGTTCTAGAACACAAAAGTTTGTAGACTGAAAAACCAAACCATAGAAATCATGGTTATTGTTATCGGACATGCAATCTAATGGAACATTGTCATAC
e caePb3.Scfld02_0        3069689 234 -  4147112 I
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=-31.000000
s ce10.chrX               2323211 1 + 17718866 A
s caePb3.Scfld02_0        3069923 1 -  4147112 G
i caePb3.Scfld02_0       I 234 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e cb4.chrX               17053525 1397 - 21540570 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=273.000000
s ce10.chrX               2323212 1 + 17718866 A
s cb4.chrX               17054922 1 - 21540570 A
i cb4.chrX               I 1397 C 0
s caePb3.Scfld02_0        3069924 1 -  4147112 A
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     56192 2863 +   720316 I
e caeSp111.Scaffold576      78596 698 -   128984 I
e caeRem4.Crem_Contig233    51435 613 -   113162 I

a score=422.000000
s ce10.chrX               2323213 1 + 17718866 A
s cb4.chrX               17054923 1 - 21540570 A
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    52048 1 -   113162 a
i caeRem4.Crem_Contig233 I 613 C 0
s caePb3.Scfld02_0        3069925 1 -  4147112 G
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     59055 1 +   720316 A
i caeJap4.Scaffold18213  I 2863 C 0
e caeSp111.Scaffold576      78596 698 -   128984 I

a score=61297.000000
s ce10.chrX               2323214 108 + 17718866 ACTCACATTGAATCTTGGCGGCAAGTGTGCAGCGGGCTCGCTGTTCCGACGACGGTTCTTTTGGAAGAACTTGAGCATCGCCGTGT--------------CTGAA-------------------------AATAAAAAATAAAATCT--
s cb4.chrX               17054924 118 - 21540570 ACTTACTGTAAATCTCGGTGGTACATGTGCCGCCGGCTCGCTGTTCCGGCGGCGgttcttctggaaaaacttGAGCATTggc-ttc--------------ctgaa----------aaaataacaagatGATATGGGAAAAAA----T--
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    52049 126 -   113162 actcaCATTAAACCTCGGAGGAACATGAGCAGCCGGTTCACTGTTACGACGACGGTTCTTCTGGAAGAACTTCAGCATCa---ctt--------------ctgaaaacagtaaataaaataacaaaatagaATAGACACAAT----T--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      79294 101 -   128984 acttACGTTAAATCTTGGAGGAATGTGGGCTGCCGGTTCGCTGTTGCGACGACGGTTCTTCTGGAAGAACTTAAGCatcg---ttt--------------ctgaa-------------------------aatagacaCCAA----T--
i caeSp111.Scaffold576   I 698 C 0
s caePb3.Scfld02_0        3069926  99 -  4147112 ACTTACGTTGAATCTTGGCGGAAGGTGGGCAGCTGGTTCGCTGTTACGACGACGGTTCTTTTGGAAGAACTTGAGCatcg---tct--------------gaaaa-------------------------aattagaat--a----t--
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     59056 117 +   720316 ACTTACCAAGAATCTCTGAGGTATGTGAGCGGCTGGCTCGCTGTTACGGCGTcggtttttttgaaagaaCTTTAGCATTT---TATGCTGGGTTCGggacctgaa-------------------------aaaaaattaaaa----tct
i caeJap4.Scaffold18213  C 0 I 3815

a score=61045.000000
s ce10.chrX               2323322 363 + 17718866 GA-TGATGATCACTGAATATCATAGAATGAGTTCTACACGTCAAGTGGTAGT---------ATTGAAAACTGG------------AGAGTTA--ATCAGACATCATCAGTTATTC--CAGGACATGTGAG-TGT--------------CAAAGAAATACAGAAAATAATAAAAGCAAAA--GAATACAAAAAAACACGAATA--TGGAGAAAAAGGATAG---AGAGGCTGTATCACACCGCATAG------AAAAAAGGTTTC-GTCCCATATTTAGAAC-------------AAATGACATATTGTTGTTCTGTT-------------GAGG---CACAAAG-------------TGGCTTCTTTCGCACTCTGGGTTTG---GTTCGTTAT-------------C--------TGTGTTGCATAAAAATGATCA-CCCAA-----CAGAGAAAAAAAA---------ACACAC-ACAAGTTTCAACTTTTTTGTCTC
s cb4.chrX               17055042 359 - 21540570 TA-TCACGAGCGTTG-AT---------------------GTCAAGTCGTATT-----AAGTGAGGAAAAACAGGAGT--GAAAGGGGAGTTAATATCAGACATCGT-----------GGGCCCATGTGAGATGT--------------CCatgaaatgca----------------aaa--aaaattgagaagatcaGAAGAAT-----ACAAAAGTTAT--------------------------------GAGAGAGGTTTCTACCC--GATTTAGAATGGAGaatggagaaaaatgagacattGTTGTTCTTTCTTGTCGGGGAAGAGGGGGGACCCGAAGAGTCA--------------ttttcgcact-tgtgct----------ttgtttgggtttcggttttttgttgcttttttcaactgaaatgaTCA-CATAACca--caaaaaacaagttgtaCCAACACCACAT-CCaagtttcatcttttttcttcc
i cb4.chrX               C 0 I 534
s caeRem4.Crem_Contig233    52175 410 -   113162 TA-TTA-GAGCATTG-ATATA--------------ACACGTCAAGTCATAGTAATGgaagtgatgaaaaatgagaa---gacgaAGGAGTTA--ATCAGACATCATTGGTTATTCCCGGGGCCATGTGAG-TGTGACTAGTCTG-CCGtcataaaataca----------------aaatgaagaataaaacgatacaaaaagtgagaaataagAGATATTGAGGGACATGCATGAAGTTG-----------GAGAAAGGTTTC-ACCC--GATTTAGAACAGAG---------AAATGACACAttgttgttctttttgtttg-------aGGGGGACCCAACGAGTCAGTTTAGTTCGGCTTCTTTCGCACTCTGTATCTC---TTCTATTGTTTAGGTTTTAGCtt--------tttttGCATGGAAAATGATCACcagaagcaacaaaaaaacaagtt---------tcacatcccaagtttcaaattttcgtttca
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      79395 408 -   128984 TACTAATGAGCATTG-ATATC--------------ACACGTCAAGTCGgag------------tgaaaaatgagaatgagcGGATGGAGTTA--ATCAGACAACGTCGTCTATTC--GTGACCACGGGAG-TGTGACTAGTCGGCGTCAAACAAAATACAAATAGGAGATAATAGGAAA--AAGGatacaaaaatatgaatagtgacgagaaaag--------aaaatatgaatgaaGTTGGAGGACGAGTGGAGAAAGGTTTC-ACCC--GAtttagaataga----------aaatgacacattgttgttctttttcctct-------gaGGGGCCCCAAAGAGTCA-TTTTGTTCGGCTTCTTTCGCACTCTCtatcttctcttctattGTTTGGGtttagttct--------ttttttgcatgGAAATGATCA-----------C-AAAAACAAGTT---------TCTCATCCTAAGtttcaactctttttttct
i caeSp111.Scaffold576   C 0 I 3
s caePb3.Scfld02_0        3070025 405 -  4147112 ta-TGACGAGTATTG-ATAACATAG----------ACACGTCAAGTGGTAGT-----AAA-GATGAAATATGAGAATGTGTAGAAAGAGTCA--ATCAGACATCGTTTCCTATTT--CAGGCCACGGGTG-TGTGACTA------Gtaaaagaaaatacaaaaa--agataata--aaa--acgaatacaaaaatatgaatg--gacagaaaaggattgggaaaaaaGACTGATGAAGTTGAAGGACGAGTAGAGAAAGGTTTC-ACCC--GATTTAGAATGGA----------AAATGACACATTGTTGTTCTTT---CTCC-------GAGGGG-CCCGAAGAGTCAtttttgttcggcttcttttgcactctctatctt---ttctattgtttgggctttg---c--------ttttttgCATGGAAATGatca-----------caaaaaacaagtt---------tcacATCCtaagtttcaacttttttgtggc
i caePb3.Scfld02_0       C 0 I 22
e caeJap4.Scaffold18213     59173 3815 +   720316 I

a score=-2395.000000
s ce10.chrX               2323685 23 + 17718866 -----CCGAAAAGTTGGAGTCTTGGATG---
s caeRem4.Crem_Contig233    52585 31 -   113162 aatgGAAGAGGGagccaagttttttttggtg
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      79806 12 -   128984 -----ttgagagtGCCG--------------
i caeSp111.Scaffold576   I 3 C 0
e caePb3.Scfld02_0        3070430 22 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17055401 534 - 21540570 I

a score=23827.000000
s ce10.chrX               2323708 132 + 17718866 TTTCTTCAAAACGGAAGTCCGTGAGACTTCATCATGTG-----------AGCAAATGGGAAAAAGAAGGAATTATGATGGGAAGCA-CTGAATTAAATTTGTTGTCATTGGAAGAGCAGAAACGTCCGCATTTTGAGAAAATAT----------
s caeRem4.Crem_Contig233    52616 134 -   113162 --tATCTCAAACGGAAGTCCATGAGTCTTCGTCATGTGGGCGAG---GCTGCTAATGGGAGAAGA-GGGAATTATGATGT---GCt-ccaaatcaaattttttaacaTT---------GGTGAATATC-ATCGTCTGGCTGTAGACGACGGAAG
i caeRem4.Crem_Contig233 C 0 I 7
s caeSp111.Scaffold576      79818 133 -   128984 TGTCTCTCAAACGGAAGTCCATGAGCCTTCGTCATGTGGTAGACGCAGCGGCTAATGGGGGAAAAGGGGAATTATGATGA--AGCTCCCGcatcaaaattgttttcaat---------gaaaaatctcgaTTATGTGATCACCA----------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3070452 138 -  4147112 tctcttctaaaCGGAAGTCCATGAGTCTTCGTCATGTGGTAGACTT-GAAGCTAATGGGAGAAGA-GGGAATTATGATGG--AGCT-CCGAATCAAATTTGttgtcatt-caaaaatgaaaaaatctcgaTTATGAGATCATCA----------
i caePb3.Scfld02_0       I 22 C 0
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17055401 534 - 21540570 I

a score=29306.000000
s ce10.chrX               2323840 213 + 17718866 ----------GAAGGTGAAGGCCGAAGGC-AGCACAAACTGG------GTTCAGGAAATTGCGAGAGAATGCAAACATAACT----G-GCAAAAGTGCAACAC----------AGAAAAT-----------------GAGGAATGAGGAATGGTGGTTTG--AATGTCGGGGG-------GTGGTGACAC----AATAAAATGAATGAAATA-AAGTGTGAACTTTCAAAAAATA--GGCTGTTTAAGTTGTTCATTACAGTGTTTGATCTATGGAAT
s cb4.chrX               17055935 182 - 21540570 ----------gaagaaaaagtggGAGGGC-ATGGCTCaagga--------------aaccaaaaaagaatgTAAACAT-TCTaagga-agaaaaatgca--------------aTGGTGTCC---------------ATAAAAAAGGACA---TTGTTTG--ATTGTC---------------TACCCAC-------AAAGGTGTTAAAA---ACTTTCCTTCCTT-AAAAATTGGTGGTTG---------TTCATTACAATGTTTGATCTTCGAAAT
i cb4.chrX               I 534 C 0
s caeRem4.Crem_Contig233    52757 232 -   113162 ----------gaagaagaagaggaataag-agaactcaaaaa--------------aatgatagaagaATGTAAACAT-TAT----G-GAAAAAGTGCAACAACTCTTGGGGCATGGTATTTCGAACAGAACAAGAAATAAAGTGAGACAAAGTTGTTTG--ATTGTCGGTGGGAGTCTTTTGTAGACACCTCGGGTAAATGGAATAAAATG-AGGTggtaacttt-aaaaaata--aattg---------tttcttACAATGTTTGATCTTTAAAAT
i caeRem4.Crem_Contig233 I 7 C 0
s caeSp111.Scaffold576      79951 232 -   128984 TGGGATGTCTGAAGGAAGTGGGAAGAGAT-GGAGCACATGAA---------CTCGAAATATTGAAAGAATGCAAAcat-tca----a-gaaaaagtgCAATAA----------AAGGTATCCagaagagaatagaa-aaaaggtgagACAAAGTTGTTTG--ATTGTCGTT---------TTGTCGCCAC-CCGCGtaaatgaaacaagaaataaaaggtaactttcaaaaaata--agttgtTCA-----TTCATCACAATGTTTGATCTTTAAAAT
i caeSp111.Scaffold576   C 0 I 2644
s caePb3.Scfld02_0        3070590 232 -  4147112 CCGTCTGGCGGAAGAAGACGGCGAAAGGTGGGAGTATATGAAAGAACAGAGCTCGAAATATTGAAAGAATGCAAACAT-TCA----AGGAAAAAGTGCAACAA----------ATGGTATCCAGAACAAG--------------GAGACAAAGTTGTTTGATATTGTCGTT--------------GCCGC-CCTCGtgaatgagaaataaaaaaggtggtaactttcaaaaaata--ggttGTTCATTTCGTTCATTACAATGTTtgatcttcaaaat
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     59173 3815 +   720316 I

a score=-18.000000
s ce10.chrX               2324053 6 + 17718866 -AGGTTT
s cb4.chrX               17056117 6 - 21540570 CGGTTT-
i cb4.chrX               C 0 I 2814
s caeRem4.Crem_Contig233    52989 6 -   113162 CGAGTT-
i caeRem4.Crem_Contig233 C 0 I 953
s caePb3.Scfld02_0        3070822 6 -  4147112 tgagtt-
i caePb3.Scfld02_0       C 0 I 793
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e caeSp111.Scaffold576      80183 2644 -   128984 I

a score=0.000000
s ce10.chrX               2324059 1852 + 17718866  
e caePb3.Scfld02_0        3070828  793 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    52995  953 -   113162 I

a score=774.000000
s ce10.chrX               2325911 18 + 17718866 TAGCAAGAAACGGAGCAC
s caePb3.Scfld02_0        3071621 18 -  4147112 TGGTTAGAAGCCAAGCAC
i caePb3.Scfld02_0       I 793 C 0
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    52995 953 -   113162 I

a score=6839.000000
s ce10.chrX               2325929 125 + 17718866 ACGTCAATAGAATGTCCTATTGGAATTTTTAATAACACGGATATTTATTTATATAAACAGGCGAGAGACGGCAAGAG-ATGACCAAACAGAACTCGGTGCGTCTAGACTAAGGAA--------AAACGACGAAA--
s caeRem4.Crem_Contig233    53948 121 -   113162 ACGTCAAA-AAATGTCCTCCAGGAATTTATAATTCTCGGGATATTTATTTATgtagagagaaaaggaaaagtgaaagaatG----AGAATAACTGGGTGCAGATGGACTGAAAAG----------ATGTATCGAAA
i caeRem4.Crem_Contig233 I 953 I 1936
s caePb3.Scfld02_0        3071639 118 -  4147112 --GTCAAATGGATGTCCTCTTGGAATTTTTAATACCGAATATTTCTATTTAT---------AAAGAAAGactggaag-atg----aagagaacTGAGTGCAGACATACTCAGAAGTGGGGGATAAATGAAGCAA--
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I

a score=191.000000
s ce10.chrX               2326054 2 + 17718866 CT
s caePb3.Scfld02_0        3071757 2 -  4147112 CT
i caePb3.Scfld02_0       C 0 I 2611
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    54069 1936 -   113162 I

a score=0.000000
s ce10.chrX               2326056 1833 + 17718866  
e caePb3.Scfld02_0        3071759 2611 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    54069 1936 -   113162 I

a score=1746.000000
s ce10.chrX               2327889 123 + 17718866 CGATACTTTTAGTAGTGGGTGTCTTTTTTTTTCACAAACAAGCAGGTG---CATTTGCCAAGTCAAATACGATATGACTCCGTGCATCTGCTGGTTTTCATTTCTTTTTACTTCCCGGTTGACCGA
s caeRem4.Crem_Contig233    56005 107 -   113162 CGGTAATTATCAAAAAGAGTGTCTCCTTTCATGACCGACAGGCAGGTGGTGCATATGTCAAGCTTGGT----CATGGTTTC-TGCa---gatgttttccatttttattca-----------acCGA
i caeRem4.Crem_Contig233 I 1936 I 92
e caePb3.Scfld02_0        3071759 2611 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I

a score=0.000000
s ce10.chrX               2328012 97 + 17718866 TACTATTTCACAGGTGTTACAAGTTTAATTCAGAAATATTTCGTCAACTCATTTCCATAATTTTCATGCTCCTCTAATTTTCATTACCTAATATCAA
e caePb3.Scfld02_0        3071759 2611 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    56112 92 -   113162 I

a score=153.000000
s ce10.chrX               2328109 22 + 17718866 GTTGTTGTGCAAACGAGTAAAC
s caeRem4.Crem_Contig233    56204 16 -   113162 GATGTCCTCCAAACGA------
i caeRem4.Crem_Contig233 I 92 C 0
e caePb3.Scfld02_0        3071759 2611 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I

a score=0.000000
s ce10.chrX               2328131 3 + 17718866 TGA
e caePb3.Scfld02_0        3071759 2611 -  4147112 I
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I
e caeSp111.Scaffold576      80183 2644 -   128984 I
e caeRem4.Crem_Contig233    56220 0 -   113162 C

a score=10796.000000
s ce10.chrX               2328134 33 + 17718866 ATGCATAATCTTGTGAGCGAGAATCACATATCT
s caeRem4.Crem_Contig233    56220 31 -   113162 ATGCATAATCTGGT--GCAAAAGTCTCGCATCG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      82827 31 -   128984 ATGTATAATCTGGT--GCAAGAGTCTTGTGTCC
i caeSp111.Scaffold576   I 2644 C 0
s caePb3.Scfld02_0        3074370 31 -  4147112 ATGCATAATCTGGT--GCAAGAGTCCCGTATCT
i caePb3.Scfld02_0       I 2611 C 0
e caeJap4.Scaffold18213     59173 3815 +   720316 I
e cb4.chrX               17056123 2814 - 21540570 I

a score=52587.000000
s ce10.chrX               2328167 52 + 17718866 TCCATCTGTTGCAGATGAATATTGCA-CCAACACCTGCCAT--------TGGCTAATTACT
s cb4.chrX               17058937 55 - 21540570 TCCATCTGTTGCAGATGAATATTGCACCCAACACCTGCCACCT------TCACTAATTATC
i cb4.chrX               I 2814 C 0
s caeRem4.Crem_Contig233    56251 58 -   113162 TCCATCTGTTGCAGATGAATATTGCA-CCAACACCTGCCACATGCTA--TCCCTAATTACT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      82858 58 -   128984 TCCATCTGTTGCAGATGAATATTGCA-CCAACACCTGCCGTATTCTC--TGACTAATTATT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074401 58 -  4147112 TCCATCTGTTGCAGATGAATATTGCA-TCAACACCTGCCGTATTCTC--TTGCTAATTACC
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     62988 60 +   720316 TCCATCTGTTGCCGATGAATATTGCA-CTAGCACCTGCTTCGATATCAATGCCTAATTACT
i caeJap4.Scaffold18213  I 3815 I 87

a score=7823.000000
s ce10.chrX               2328219 94 + 17718866 CTATTGAAGCCGTTCCGTA-----TTCC-ATTCTGTTCTTTCTCCATTCAGACAAGCCGAA--CGATGACTGATCAGGTCATGCAGGTGCATGTG-----AAAGATT-
s cb4.chrX               17058992 94 - 21540570 CTATTGAAGCCCTTCTATA-----TTTCTGTTCCTTCCTGTTTCTGCTTCGCTGGGGTCAGACAGAGAACCCTTCCTGT----CAGCTGTAGGTG-----TAATAGTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    56309 90 -   113162 TTATTGAAGCCGttccatt-----cttc--tttctttcattctccttttccttcaGTTTAA--AGGTGACTAATCCT---------TTGCAggtgaaaaataatgttt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      82916 95 -   128984 CTATTGAAGCCGTTCCATACCCTCCTCCTACTCCCTTTATTCTCTTATGTTTAAGGCCGAA--CGG----TGATCTCATTG-GCAGGTGCAAATG-----AAATATA-
i caeSp111.Scaffold576   C 0 I 6
s caePb3.Scfld02_0        3074459 92 -  4147112 TTATGGAAGCCGTTCcct------ttccaatttcctttATTTCCTAGACTCTAAGG-TGAA--CGGTGACTGATCCGGTTG-GCAGGTGCAAATG-----AAATATT-
i caePb3.Scfld02_0       C 0 I 65
e caeJap4.Scaffold18213     63048 87 +   720316 I

a score=-426.000000
s ce10.chrX               2328313 9 + 17718866 CGCGGTTTT-
s cb4.chrX               17059086 8 - 21540570 -CTGAATTT-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    56399 9 -   113162 -tgggGTTTT
i caeRem4.Crem_Contig233 C 0 I 165
s caeSp111.Scaffold576      83017 9 -   128984 TTCGGTCTT-
i caeSp111.Scaffold576   I 6 C 0
e caePb3.Scfld02_0        3074551 65 -  4147112 I
e caeJap4.Scaffold18213     63048 87 +   720316 I

a score=-1000.000000
s ce10.chrX               2328322 8 + 17718866 ATTTTATT---
s cb4.chrX               17059094 8 - 21540570 ---CTTTTGTT
i cb4.chrX               C 0 I 910
s caeSp111.Scaffold576      83026 8 -   128984 GGTCTACC---
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3074551 65 -  4147112 I
e caeJap4.Scaffold18213     63048 87 +   720316 I
e caeRem4.Crem_Contig233    56408 165 -   113162 I

a score=870.000000
s ce10.chrX               2328330 85 + 17718866 TGACTCATGGGTTCCCT----TATTCTC--GGTCCTTTCAAGATTTTATGTTTCATAAAGAGCTTGGTGTTGTGCAACATTTTACATTTTG
s caeSp111.Scaffold576      83034 90 -   128984 T-ACTCGCAGGCTTTCGAGAATgttctcaaaattctcttgaaattttctttatcgagtaaaattcagaaatttgcGACGATTTTTATTCTG
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3074551 65 -  4147112 I
e caeJap4.Scaffold18213     63048 87 +   720316 I
e cb4.chrX               17059102 910 - 21540570 I
e caeRem4.Crem_Contig233    56408 165 -   113162 I

a score=0.000000
s ce10.chrX               2328415 1570 + 17718866  
e caePb3.Scfld02_0        3074551   65 -  4147112 I
e caeJap4.Scaffold18213     63048   87 +   720316 I
e cb4.chrX               17059102  910 - 21540570 I
e caeSp111.Scaffold576      83124    0 -   128984 C
e caeRem4.Crem_Contig233    56408  165 -   113162 I

a score=951.000000
s ce10.chrX               2329985 42 + 17718866 AGAAGTAAGTAAGTAGTTG-----------TCTAACTTGCAACATTTGTTCAC
s caePb3.Scfld02_0        3074616 52 -  4147112 AAAGGTAAGTAGTTGGTTGGTTGTTTGGAATCtaactt-ccatttttattctt
i caePb3.Scfld02_0       I 65 C 0
e caeJap4.Scaffold18213     63048 87 +   720316 I
e cb4.chrX               17059102 910 - 21540570 I
e caeSp111.Scaffold576      83124  0 -   128984 C
e caeRem4.Crem_Contig233    56408 165 -   113162 I

a score=328.000000
s ce10.chrX               2330027 6 + 17718866 -TGTGAA
s caeSp111.Scaffold576      83124 6 -   128984 TTGTG-A
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074668 6 -  4147112 ttgta-A
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     63048 87 +   720316 I
e cb4.chrX               17059102 910 - 21540570 I
e caeRem4.Crem_Contig233    56408 165 -   113162 I

a score=11306.000000
s ce10.chrX               2330033 55 + 17718866 TTGTCTTCTTACCAGGTCAATT-GACAATTTCCCAAAGTACTTTAAA-AC-------ACTGAGT
s caeRem4.Crem_Contig233    56573 56 -   113162 TTGTCTTACTACCAGACCAATT-GACCGTTTTACGAAGTGATTCGGGTACAAGTAGA-------
i caeRem4.Crem_Contig233 I 165 C 0
s caeSp111.Scaffold576      83130 48 -   128984 CAACCTCATTAACAGGTCAATT-GGCCGTTTTACAAAGTACTTCGGA-AC--------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074674 48 -  4147112 CAACCTCATTACCAGGTCAATT-GGCCGTTTAACAAAGTACTTCGGA-AC--------------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     63135 45 +   720316 TTGTCTCATTACCAGGTCAATTGGGTTGTTTCCTTTAGCAACGAG-------------------
i caeJap4.Scaffold18213  I 87 C 0
e cb4.chrX               17059102 910 - 21540570 I

a score=95575.000000
s ce10.chrX               2330088 164 + 17718866 ATATAAATGCCTTATAAAAATCAAGGTTC--GCTAATGTCTCTCTCTCCAAAC---G---------GGCCAGAATGAGAATCCTCTTGAAA----CCGCCACACTCAACTTGTGCATACT-CATATTTGTCTACGTATGAGTTC-----------------------------------------------------------------GGC----------------------------CATGGTGTTCACGCGTGAATGCTACTTTCAAATAAA
s cb4.chrX               17060012 181 - 21540570 ATGTAACTGTTTTGCAAAAATCAAGGTTT-GCCCTGCCCACTCAGACTCAACC-GAGATTC-----AAACAGTGTGTGAACCCTCTTGAAAATCCCCGCCATACTCAACTTGTGCGTACTCCATATTTGTCTACTT-TTAGTTTC-------------------------------------------------------------TGGGGCGA--------------------------AGAGGTGTTCACGCGTGAATGCTACTTTCAAATAAA
i cb4.chrX               I 910 C 0
s caeRem4.Crem_Contig233    56629 168 -   113162 ATATAAATACCTTCCAAAAATCAAGGTTC-CGCCAatgtcttcatcttcttcc---gaTTT-----GAACAGTGTGTGAACCCTCTTGAAA----CCGGCACACTCAACTTGTGCATACT-CATATTTGTCTACTT-TTAGTTT-----------------------------------------------------------------GGC----------------------------CGTGGTGTTCACGCGTGAATGCTACCTTCAAATAAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      83178 172 -   128984 -TAGACACGCTTTATAAAAATCAAGGTTCAGGCCAATGTCTTCTTTATCGTCT---TCTTCCGAACGAACAGTGTGTGAACCCTCTTGAAA----ACGGCACACTCAACTTGTGCATACT-CATATTTGTCTACTT-TTAGTT------------------------------------------------------------------GGC----------------------------CGTGGTGTTCACGCGTGAATGCTACTTTCAAATAAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074722 169 -  4147112 -AAGAAACGCCTTATAAAAATCAAGGTTT-GACCGAAgtcttcatcatctccttcATCTTCCGAAGGAACAGTGTGTGAACCCTCTTGAAA----CCGGCACACTCAACTTGTGCATATT-CATATTTGTCTACTT-TTGGTT---------------------------------------------------------------------------------------------------CAGTGTTCACGCGTGAATGCTACTTTCAAATAAA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     63180 250 +   720316 ----AGATGCCGTGCAAAAAtcaagacat--------gttttctcttcCGTTC---AGTCC-----GAATAG--TGTGAACCCTCTTGAAAA---CCGCCACACTCAACTTGTGCATACAACATATTTGTCTCCTT-TTGATTATGTTCTGTTCTGTTCTGTTCGGTTcagttcgattcgattcgcgCACggagaagtaagggaagggaagcgaagagatgaggagagaagaggaaaaagaaaagtgtTCACGCGTGAATGCTACTTTCCACTAAA
i caeJap4.Scaffold18213  C 0 I 113

a score=1893.000000
s ce10.chrX               2330252 83 + 17718866 GTGC--GATGTC----CTCCCCCCCTCCC--TCACCTTATTCGTCTTGCATCCCACTCAGTTGTTCTACCGGGAGCCAG--AGATCGGGTG-TT
s cb4.chrX               17060193 72 - 21540570 GTgcgagat-tccgagattccccCTCCCC--TC------CTATTCTGG-----------TGTTCCTCACCGGGAG-CAGTTTGTGTGTGTG-GT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    56797 64 -   113162 GTGC--GAT-TC----ACTTCGCCTGCCCAGTC------TTCCTCTG-------------TTTCTTGTCCGGGAG-CAG--AGATCGTGTG-TT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      83350 73 -   128984 GTGC--GAT-TC--------CCTCTTCCT--TC-CCGATTCCATCCGT---CCCACT-ATTTTCTTCGGGGGGAG-CAG--AGATCGCGTGTTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074891 56 -  4147112 GTGC--GAT-TC--------TCCCCtccc--tc------ttcctcc-------------ttttcccc---GGGAG-CAG--AGATCGTGTGTTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     63430 113 +   720316 I

a score=198738.000000
s ce10.chrX               2330335 661 + 17718866  
s cb4.chrX               17060265 659 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    56861 708 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      83423 687 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3074947 697 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     63543 639 +   720316  
i caeJap4.Scaffold18213  I 113 I 62

a score=26104.000000
s ce10.chrX               2330996 73 + 17718866 TGT----TATGTGTTGCAATTCAATTCCGAATGCAAATTGGTTGCTTCGTTTTCCGCACACAAGCCA-------------ATTTTTTTTT
s cb4.chrX               17060924 76 - 21540570 TTCGATGTGTGTGTTGCAATTTA-----GAATGCAAATTGCTT-----CTTCTCCG----CAAGAAAAAGAGACTGgacaactgtttttt
i cb4.chrX               C 0 I 1095
s caeRem4.Crem_Contig233    57569 61 -   113162 TGT----TATGTGTTGCAATCCA------AATGCAAATTG--------CTTCTCCG----CAAGACG-------TCTACAACTGTTTTTT
i caeRem4.Crem_Contig233 C 0 I 5
s caeSp111.Scaffold576      84110 55 -   128984 TGT----TATGTGTTGCAATTCA------GACGCAAATTG--------CTTCTCCG----CAAGaca-------------actgtttttt
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3075644 55 -  4147112 TGT----TATGTGTTGCAATCCA------AATGTAAATTG--------CTTCTCCG----CAAgaca-------------actgtttttt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     64182 62 +   720316 I

a score=-36274.000000
s ce10.chrX               2331069 317 + 17718866 ----------GTCGT-TTAATATTCATTGGTAGAAGAGATAATGGTCACAATCGTAGGTGCATTTGCAGATGTTAGAATATCAAAATCTTATAAAAATAGTTGCTTCCGAAAATTGGGATTTTCGTCAATTGCCGAGTTTCTTAATTTTTGCTCTTTATGATAATTTGGCTATTCAACAATTTTCGTGTTAAAAATTTGAAGAAAAATGAATTTGGGGTTACTT-----TAGATAATTTGACAATTCCACaattaattttttaaaatttttttaCCGACTCAAAAAATGGATAAAACTCAA------------------TTT-----TTAATTAGTTTTTTTGAAAG-------TTGAAATTT
s caeRem4.Crem_Contig233    57635 142 -   113162 ----------GTATC-CTAATATCCCTGGGTACCCA-------------------------------AGATGTTTGTTGGTCAAGAACTGTAAATGAGAGTTTCATTCGAATA-----------------------ATATTTGAGTGtctgc---------------------------ttttttcaga--------------------------aaatca--------ta---------aCATTTAC-----------------------------------------------------------------------CTT-----TCAAAGAAA---TTTATCAGATATC--TTGA-----
i caeRem4.Crem_Contig233 I 5 C 0
s caeSp111.Scaffold576      84165 154 -   128984 tctgtcgtAGGTACA-TTAATTTGCCTAGGTACAT--------------------------------------------------------------------GAGACGTTTG-----------------------GCATCTAAACGCTAGTCC--------------------AGATATTTGTTGTGTAGTACAACT-----------------GAACCTTTT-----TACGTGATTTTATGTTTAG-----------------------------------------------------------------------TTT--TGGTTCAGTATC-CCTCTAACGGAAGttctttgagttt-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3075699 263 -  4147112 t---ttctgagtgtATTTAATATGCCTAGGTACATG-------------------------------AGACGCTGGACTGT---GGGCGGATAAACGTAGTTCAGTACGTATG-------------------------ATCTACGTCCTagata--------------------ctgtattttttcaaagataaaCTTCAGG----------TTAGAACCATTTGAATATAAATTCTGGcatatttagaaaaatgagaatgggaAAATTAGATCGCGTTATAGAAAATTGACATGCTTGTGTGACTTGTGTGAAAAACATTTGATAGTTAAGGAta-tttttgtcag-------ttgaacTTT
i caePb3.Scfld02_0       C 0 I 75
e caeJap4.Scaffold18213     64182  62 +   720316 I
e cb4.chrX               17061000 1095 - 21540570 I

a score=-2578.000000
s ce10.chrX               2331386 48 + 17718866 AAAATGTTTTTTTTCTTTAAAAGTGATGCTAACACAGTTTTTACCACT--------
s caeRem4.Crem_Contig233    57777 20 -   113162 ------------------AAAAGTAGT----------TCTCTGCCACT--------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84319 29 -   128984 -----------------tcaatatcat----------ttttcatttttatataatA
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3075962 75 -  4147112 I
e caeJap4.Scaffold18213     64182 62 +   720316 I
e cb4.chrX               17061000 1095 - 21540570 I

a score=-963.000000
s ce10.chrX               2331434 49 + 17718866 TTTTGACTCGAAATAAAAAATTTTACAAGTTTTTTTTTTTGAAAAGCCT
s caeSp111.Scaffold576      84348 21 -   128984 ATT--------AACTGAAAGTTTCAccaa--------------------
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3075962 75 -  4147112 I
e caeJap4.Scaffold18213     64182 62 +   720316 I
e cb4.chrX               17061000 1095 - 21540570 I
e caeRem4.Crem_Contig233    57797  0 -   113162 C

a score=-1803.000000
s ce10.chrX               2331483 58 + 17718866 TACAACTACATTAATCATTTGGAAAATTTTACGCGACCCAT---GTTGTTCAATGTTTAGG
s caeSp111.Scaffold576      84369 31 -   128984 ----------------atttg--gatttttccaCTCTCAAT---GT---------TTCATT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076037 45 -  4147112 TGCAAC-------ATCATCTGTCAACTTTACCGGATTGCAtcgagt---------ttcaga
i caePb3.Scfld02_0       I 75 C 0
e caeJap4.Scaffold18213     64182 62 +   720316 I
e cb4.chrX               17061000 1095 - 21540570 I
e caeRem4.Crem_Contig233    57797  0 -   113162 C

a score=-6702.000000
s ce10.chrX               2331541 50 + 17718866 AAAATATTTCAGTCCCAGTACCAAAATGTGTTTCAATCCCAATTTTTTCC-
s caeRem4.Crem_Contig233    57797 39 -   113162 AGAGCATTTTGATTG---------AATATGCTACAATTTCATATTTAT---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84400  6 -   128984 AAATCA---------------------------------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076082 33 -  4147112 aaacta--ctGACCC---------AAT-------AATACTACATGTCTCCA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     64182 62 +   720316 I
e cb4.chrX               17061000 1095 - 21540570 I

a score=-19845.000000
s ce10.chrX               2331591 72 + 17718866 AATTGCTC---------TGTTTTTA----TTTTTCTCAAAAATGCCAAACCCTAAAACCTACTCCAAATTGGTTTCTACTTGGTA
s cb4.chrX               17062095 72 - 21540570 aattaatcagattatataattttcacaactttc--------CAGCCAA---CCAATAACTTCtccaattt--ttactttttttca
i cb4.chrX               I 1095 C 0
s caeRem4.Crem_Contig233    57836 26 -   113162 -----------------AACTTCTA----TTTC--------AAATCAA---CCGA---------------------------CCC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84406 13 -   128984 ------------------ACTGTTC----CTT--------------------------------------------------CTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076115 14 -  4147112 -----------------CCCTCTTT----CTT--------------------------------------------------CCC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     64182 62 +   720316 I

a score=43402.000000
s ce10.chrX               2331663 165 + 17718866 TTGTTCCTCAC--GCTACTAAGAAATAATATCA-------TT--TGAAA-------A---AATAGT--GATCGGAAGGAGGAAGAGTGGCATTTA-AGTAGAGATTAATAGAACGGTTAGCGCTCAACCCATT------CTCATTTTATTTATTTATGCTTCC-TATATGGCGCA--TC-------CATCTCTACAACAATTTTG
s cb4.chrX               17062167 162 - 21540570 tttttctttgca-ACTTCTATCTAATAGCACCC-------TA--TAACA-------GTCCCACCGC--GATAGC---GAAGACTC-TTCCATTTA-AGTAGAGATTAATAAAACGGTTAGCGCT---CCTACCCCCCTGCTCATTCTATTTATTTATGCTTCCTTATATGGCGCATCTC-------AATAGTCCTA---------
i cb4.chrX               C 0 I 3
s caeRem4.Crem_Contig233    57862 154 -   113162 TTATAAGGcaca-atgaaaaagaaacaacacCC-------GAATGAAAA-------G---AATAGA--GATAGT--GGAAGACGAGTGTCTTTTA-AGTAGAGATTAATAAAACGGTTAGCGCTGAACct---------ctcattttatttatttatgcTTCC-TATATGGCGCA--TC-------ACTCATCCTA---------
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      84419 151 -   128984 CTAt-----aaa-gacaaagaaaaacaacaccC-----------------------G---AAAGGATTGATCGA--AGAGGAAAAGTGTCTTTCA-AGAAGAGATTAATAAAACGGTTAGCGCTGAACct---------cttcatttatttatttatgcTCCC-TATATGGCGCA--TC-------ACTCATCCCAACATAATAG
i caeSp111.Scaffold576   C 0 I 6
s caePb3.Scfld02_0        3076129 162 -  4147112 Tta------ata-gaaaaatggaaacaatacCCCgcaaaggg--aaaaa-------g---aaaaga--gatagt--GAGGGAAATGAGTCTTTTA-AGTAGAGATTAATAAAACGGTTAGCGCTGAACct---------ctcattttatttatttatgcTTCC-TATATGGCGCA--TC-------ACTCATTCCAACATAATTG
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     64244 175 +   720316 tcatcccTCGcattgcaaaaataaatatgattC-------TT--TGAAATGACGATA---AATGGG--AAGCGA--ATAAAAGAGGCATAGTATACCGAGGAGATTAATAAAACGGTTAGCGCTTAA------------CTCCGTTTATTTATTCTCGCTCCCAAGTTTGGCGCA--TCTCAACATAATCAATACGGCCTCCTGG
i caeJap4.Scaffold18213  I 62 C 0

a score=-1945.000000
s ce10.chrX               2331828 18 + 17718866 TCTCTATTCGCAACGTTT
s caeRem4.Crem_Contig233    58018  9 -   113162 -----ATTCCCAAC----
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      84576 18 -   128984 TTCCATTATTCAACGCTT
i caeSp111.Scaffold576   I 6 C 0
s caePb3.Scfld02_0        3076297 18 -  4147112 CCACTTCTTCCAACGCTT
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213     64419  8 +   720316 TTTCGGTT----------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17062329  3 - 21540570 I

a score=48619.000000
s ce10.chrX               2331846 132 + 17718866 ACTATTAGTATATGTTTATATAAAAATGATGATTTTC-----------CGCCCATAAGATTTCACACGATTTC----GGTTCACAAACATTTCATTCTCGTTCCTAC-----TAG-TT-TCTAATCCCCTCAGTTTAATCCAATCCGTAATTGT
s cb4.chrX               17062332 118 - 21540570 ACTACATATAAATGTTTATGTAaagtttctctc---------------tctccatcaGATTTCACACGAATCCCCCTCATTCGCAAG---------------TTTAC-----CAGTTT-TCTAATCCCGTCAGCTAAATCCAATCCGTTATTGT
i cb4.chrX               I 3 C 0
s caeRem4.Crem_Contig233    58027 101 -   113162 ----CACA----------------------------------------TCTTCATCAGATTTCACACTATTCTCC--AATTCACAAACATTTGGTTTCGCGTTCTAC-----TAG-TT-TCTAATCCCGTCAGTCTAATCCAATCCGTTATTGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84594 143 -   128984 ACTattagaaaatgtttatataaagtttctccttcttctcctctcttttctccatcAGATTTCACACGATTCT----AATTCACAAACATTTAGTTTAGCGTTCTAC-----TAG-TT-TCTAATCCCGTCATCCTAATCCAATCCGTTATTGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076315 134 -  4147112 ACTATTAGAATATGTT--TATGAAGATTACCCCTCTTTCTTAGTTTCTTCTCCATCAGATTTCACAC----------AACTTCTAAACATTCAG-TTGTTGTCCTAC-----CAG-TT-TCTAATCCCGTCAGCTTAATCCAAACCGTTATTGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     64427 129 +   720316 ----TTATAATCTGTTTATGTAGGAGTTTGTACACTTAT---------TTCCCACCAGACTTTCCCC----------CGATTATAAAcatttct-tcatcttcttACATCCAAAG-TTATTCAATCCCGTCAGTCTAATCTGATTCGTTATTGT
i caeJap4.Scaffold18213  C 0 I 365

a score=2402.000000
s ce10.chrX               2331978 71 + 17718866 ------------GTTATTG-TTGTCTAGATGGTAGAGTCAGTTCCGCG------AAAAAACCTGAAT----------------CTCAATTTACTGTCGGTGGGCTA---
s cb4.chrX               17062450 76 - 21540570 TGCTGTGAGAAGGAGTTAGATTGTT--GGTGGT--GGTCAGTTCcgcg----aaaaaaaacctgaat----------------------ttACTGCT---TTTGCGCCA
i cb4.chrX               C 0 I 69
s caeRem4.Crem_Contig233    58128 75 -   113162 -----GAAGAGCGAGTCAG-TTGT-------------TCAGTTCAGCG-----aaaaaaaCCtgaatgaaattttat----ttctcaaattacTGTC---TGTCTA---
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84737 77 -   128984 GAAGGGAAGATCGTGTCAG-TT----------------CAGTTCCGTG----AGAAAAAACctgaatcaatttt-----tattcgcAATTTACTGTC---GGGCTA---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076449 86 -  4147112 TGGAGAAA----GTGTCAG-TTCA------------GGCAGTTCcgtgagaaagaaaaaacctgaatgaatttttattatattCGCAATTTACTGTC---GCGCTA---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     64556 365 +   720316 I

a score=13226.000000
s ce10.chrX               2332049 43 + 17718866 TTGTTGACTATTTTTTAAAGCGTTGCGCTAAAGATCCGCACCA
s caeRem4.Crem_Contig233    58203 41 -   113162 TTGTGaagaata-ttttttg-gttGCGCCAGAGATCTACACCA
i caeRem4.Crem_Contig233 C 0 I 186
s caeSp111.Scaffold576      84814 42 -   128984 TTGTGGACAATATTTTAGTG-GTTGCGCCAGAGATCTACACCA
i caeSp111.Scaffold576   C 0 I 137
s caePb3.Scfld02_0        3076535 41 -  4147112 TTGTGGACAATA-TTTAGTG-GTTGCGCCAGAGATCGACACCA
i caePb3.Scfld02_0       C 0 I 405
e caeJap4.Scaffold18213     64556 365 +   720316 I
e cb4.chrX               17062526 69 - 21540570 I

a score=0.000000
s ce10.chrX               2332092 1090 + 17718866  
e caePb3.Scfld02_0        3076576  405 -  4147112 I
e caeJap4.Scaffold18213     64556  365 +   720316 I
e cb4.chrX               17062526   69 - 21540570 I
e caeSp111.Scaffold576      84856  137 -   128984 I
e caeRem4.Crem_Contig233    58244  186 -   113162 I

a score=512.000000
s ce10.chrX               2333182 23 + 17718866 TCCTCCTTCAGAAGTACCTGGAA
s caeRem4.Crem_Contig233    58430 23 -   113162 TCCTCCCCAAGTCTTCTCCGAAA
i caeRem4.Crem_Contig233 I 186 C 0
e caePb3.Scfld02_0        3076576 405 -  4147112 I
e caeJap4.Scaffold18213     64556 365 +   720316 I
e cb4.chrX               17062526 69 - 21540570 I
e caeSp111.Scaffold576      84856 137 -   128984 I

a score=546.000000
s ce10.chrX               2333205 2 + 17718866 TT
s caeRem4.Crem_Contig233    58453 2 -   113162 TT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84993 2 -   128984 tt
i caeSp111.Scaffold576   I 137 C 0
e caePb3.Scfld02_0        3076576 405 -  4147112 I
e caeJap4.Scaffold18213     64556 365 +   720316 I
e cb4.chrX               17062526 69 - 21540570 I

a score=-35.000000
s ce10.chrX               2333207 10 + 17718866 TTTCTCAAAC
s caeRem4.Crem_Contig233    58455 10 -   113162 ACACATAAAT
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3076981 10 -  4147112 TTTTCTACAC
i caePb3.Scfld02_0       I 405 C 0
e caeJap4.Scaffold18213     64556 365 +   720316 I
e cb4.chrX               17062526 69 - 21540570 I
e caeSp111.Scaffold576      84995  0 -   128984 C

a score=-9981.000000
s ce10.chrX               2333217 52 + 17718866 -------------------------TTCCTCAAT----------TTCATTTATAATTCGTGA--------CATTCAAACTCAATTTCAAAGTGAT-----------
s cb4.chrX               17062595 69 - 21540570 -------------------------tttctcattct--------tttttatc--atttccaaaaaaatacaattctacat--attttgagattccctGCATTAATT
i cb4.chrX               I 69 C 0
s caeRem4.Crem_Contig233    58465 59 -   113162 -------------------------ACCCTTAATATGCGAGAAATTCATATTGAATTCACAAGAAA----GATTTTACTC--ATTTCaaa----------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      84995 64 -   128984 tttctcACCTTTGTCAAAACCAAAATCCTTTTAT----------------TTAAATttacaa--------aattcaattt--atatcgaa----------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3076991 78 -  4147112 TCCCTTACTTTCGT--GCGTTAAATATCTTTAATATGCGATACACTCATATCGAATTCCGAT--------TATTTTACTT--ATTCCAAa----------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     64556 365 +   720316 I

a score=83796.000000
s ce10.chrX               2333269 232 + 17718866 ATCTATTATTTTTCCTCACACTATCC---------TCTGTGTCGTCTGCGCGCGACGGCATGCGAGATCATTAACCCGA-----TTCAAAACGCTTACTGATTCCGA-TTTACGGATTCGACTTTT-------AATTTCTC------------------CTTTACGGATATATGTATTGTTTCAAAcc---ccccccccccccccccccccGCCTACACCTCGATTTATT----------AATGCGTCACTGATATGAAATTTGATA-------AAGATTGATATCACTCAC----
s cb4.chrX               17062664 250 - 21540570 TTCTAAcaccattttccattttctca---------tccATTTTCATTC------ACGCCACGCGAGATCATTAACCCGATTCGTTTCATTTCGCTTACTGATTCCGT-tgttcaacttcttcttcttcttcttctttttcttatttctcgaaaatttcattctACGGATATATTTATTGTTTCGAAATGCCCATCATTT--------------------------CAATCCACTATAGTAAATGCGTCATTGATACGAAAATTGATAAGGTTGGGCTGATAAGAAGATTCAC----
i cb4.chrX               C 0 I 1
s caeRem4.Crem_Contig233    58524 209 -   113162 ttctattatttttcctCACACTAtcc---------tttcttttcattct-tgcGACGGCACGCGAGATCATTAACCCGA-----TTCAATTCGCTTACTGATTTCGTGTGTTCGGATTCGacttttcccattttattttct------------------ctttacGGATA----TATTGTTTCGAAAT---CAGCAATC--------------------------TTATT----------AATGCGTCATTGATATGGAAATTGACA-------GTGAATGATAAGATTCAC----
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576      85059 207 -   128984 ttcgattatttttcttttgaatatct---------tctatttcttcaat-ttggGCGGCACGCAAGATCATTAACCCGA-----TTCATTTCGCTTACTGATTCCGA-TGTTCGAATTCGACGtct-caattttattttct------------------ctttacCGAta----tattgtttcaaaat---ccGCCTTC--------------------------TTATT----------AATGCGTCACTGATGTGGAAATTGATA-------ATCGTTGCTAACAGTCAC----
i caeSp111.Scaffold576   C 0 I 78
s caePb3.Scfld02_0        3077069 207 -  4147112 atctattatttttcttctcactattc---------tccatttcttcatt-tgcGACGGCACGCGAGATCATTAACCCGA-----TTCATTTCGCTTACTGATTTCGA-TGTTCGAATTCGACTTCT-CGATTTTATGTTCC------------------TTTTACGGATA----TATTGTTTCAAATC---GCTCTGTC--------------------------TTATT----------AATGCGTCATTGATATGGAAATTGATA-------ATGCGTGATAACATTCAC----
i caePb3.Scfld02_0       C 0 I 1
s caeJap4.Scaffold18213     64921 191 +   720316 ATATATTATTCTTTTTCGCACCGTTCCCGCTTCCATTCAATTCCTTTCCGCACAAACACACGCAAGATCATTAACCCGA-----TTCAAATCGCTTACTGATCTCCA------------------------------TCGT------------------CTCTACGGATA----TAATGTTTCAAA-T---CCACACCC--------------------------TCACTGATAACGG--Gattcatcatttattt---------ca-------attcgcatttcaattcattcaa
i caeJap4.Scaffold18213  I 365 C 0

a score=-15658.000000
s ce10.chrX               2333501 62 + 17718866 TCACGTT---TCAAAAGGCGT----CTAGTTCTTTCTCTTCATATTGAGG---------------------TAAAA--GTTC---------TCGGATTCTT
s cb4.chrX               17062915 49 - 21540570 TTTCATT---TCAAATAG-------TCGCAAATTTCCAGACACTCTGGGG------------------------------TC------------AGTCTGT
i cb4.chrX               I 1 I 4
s caeRem4.Crem_Contig233    58734 49 -   113162 TTTCATTGTCTC-------------TTGTGtgtctcatttcattcagtGT------------------------------TC---------Tcgagttttt
i caeRem4.Crem_Contig233 I 1 I 24
s caePb3.Scfld02_0        3077277 54 -  4147112 TTTCGTT--TTCAAACGGATTGATTCTACggttttcatagttttctcGG---------------------------------------------AAGTTAT
i caePb3.Scfld02_0       I 1 I 1
s caeJap4.Scaffold18213     65112 86 +   720316 tttcatt---ttg------------tcatttatttaatttttttctatccGCACAGTCAGTTTATCTTTTCCAAAACCGTTCGTACTTGAGTTGGACTTTT
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      85266 78 -   128984 I

a score=-2393.000000
s ce10.chrX               2333563 14 + 17718866 GCTGCTGCTGCTGC---
s cb4.chrX               17062968  9 - 21540570 -----CTCATTCAC---
i cb4.chrX               I 4 I 1
s caePb3.Scfld02_0        3077332 14 -  4147112 GAAAGTTCCATTGC---
i caePb3.Scfld02_0       I 1 I 2
s caeJap4.Scaffold18213     65198 13 +   720316 ----CTTTCTTTGTCTC
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      85266 78 -   128984 I
e caeRem4.Crem_Contig233    58783 24 -   113162 I

a score=422.000000
s ce10.chrX               2333577 1 + 17718866 T
s cb4.chrX               17062978 1 - 21540570 T
i cb4.chrX               I 1 C 0
s caeSp111.Scaffold576      85344 1 -   128984 T
i caeSp111.Scaffold576   I 78 C 0
s caePb3.Scfld02_0        3077348 1 -  4147112 C
i caePb3.Scfld02_0       I 2 C 0
s caeJap4.Scaffold18213     65211 1 +   720316 T
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    58783 24 -   113162 I

a score=229985.000000
s ce10.chrX               2333578 606 + 17718866  
s cb4.chrX               17062979 665 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    58807 625 -   113162  
i caeRem4.Crem_Contig233 I 24 C 0
s caeSp111.Scaffold576      85345 596 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3077349 611 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     65212 546 +   720316  
i caeJap4.Scaffold18213  C 0 I 142

a score=-2083.000000
s ce10.chrX               2334184  56 + 17718866 GTTATT---TCCCTATAT-GGCA-CATGTGGCAAAT--TAGCCAGTTTCATTG-----------------------------------------TTTTTCGGAA
s cb4.chrX               17063644 102 - 21540570 GGCCATAAAGCTTCATCTCATTA-GGAATGGCATATAATGTCTAGTTT-ATTGGAAGATTTAAATGAGCTTTTGtctgattttaaaagtttcgattttttgaaa
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    59432  52 -   113162 gtCATT--TGCTTCATCT-GGCG-GACTTGGCAAAT--TATCTAGCCt----------------------------------------------tctttcgaaa
i caeRem4.Crem_Contig233 C 0 I 69
s caeSp111.Scaffold576      85941  50 -   128984 ggCATT--CGATTTATCT-GCCACGGATTGGCAatt--aatct---ct----------------------------------------------tttttcgaaa
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3077960  49 -  4147112 ggcttt--cgttttatCT-GCCAGAGATTGGCAATC--CAtc----ca----------------------------------------------ttttccgaaa
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I

a score=-22356.000000
s ce10.chrX               2334240 126 + 17718866 ATTGA--------TCCGAACAACAAATGATGTCCAAACATACGATTTTCGTAATAAAAGTTGGGCGGTTtaaaata-----------------------atttttagccaaatgttctatctcaaattaggtcggaaatatacttttttgaactatt-----------
s cb4.chrX               17063746 156 - 21540570 attgagctcatttttcggaaaaaaaa--acgtcgtagctcac--ttttcaaaaaactgataaaattcctaaaaatagtgaaaatcttggaaacccttcaaaaattgcctaaaagctttttta-aaatttttttggaa----ttttgctaaaattgttgaaatccT---
i cb4.chrX               C 0 I 104
s caeSp111.Scaffold576      85991  48 -   128984 ---------------------------------------------------------------------------------------------------acaatgaGCCCTGATTTTTATTA--------------------CTTTCTCAAAGCATTCGGCTCTGAG-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078009  48 -  4147112 -------------------------------------------------------------------------atagt--------------------CATAATGACTCACAATTATCCTGA---------------------------AAAGGGTCCAGCTCTATTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I
e caeRem4.Crem_Contig233    59484  69 -   113162 I

a score=-1001.000000
s ce10.chrX               2334366 47 + 17718866 atccttaattgcatatattggtagattaacttacgctatgtcgttga
s caePb3.Scfld02_0        3078057  5 -  4147112 ------------------------------------------GTTTA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I
e cb4.chrX               17063902 104 - 21540570 I
e caeSp111.Scaffold576      86039  0 -   128984 C
e caeRem4.Crem_Contig233    59484 69 -   113162 I

a score=-16940.000000
s ce10.chrX               2334413 150 + 17718866 ttattgtcaaaaatgccaa----------------------------aaattcttagtctatcggctttaagtgtaccttaatcaatgaattaacgtgaattatactaccaaaatat-----------------------gcggtacggaattttaaaaaattaaattcggaccgccgcgacactgaaaaaagaccaaaat------------------------------------------------------------------------------------------------
s cb4.chrX               17064006 269 - 21540570 TCTTTggaaaaaacgtgaaaattctatttgaaaatcataaattcttaaaattcctaacatttc-----taaa--------aatccagg-------------aaaaacgctaaaatcttttttttaaacctggaatttctagaattctagaagTTACCAAAAATGA--TATAACCCCTGGAATTCTGTAAAGTTCTTGGAATCCTAAACTTCCAGACCTtctaaaattctcgaaaatctcaaaaactcttgaaaatctctgaaatctaccgaaaaaaatcttagaaaatctccaaaat
i cb4.chrX               I 104 I 9
s caePb3.Scfld02_0        3078062  31 -  4147112 -----------------------------------------------TGATACTTAACCTAT---------------------------------------TATGATGCCAAAATGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I
e caeSp111.Scaffold576      86039   0 -   128984 C
e caeRem4.Crem_Contig233    59484  69 -   113162 I

a score=-11490.000000
s ce10.chrX               2334563  77 + 17718866 caaacat--------------------------------tttaactaaaaaatatgttttctttcagagaattt--taaTCTCAAAat---------tcgaata--cattt----taagtctatac-
s cb4.chrX               17064284 126 - 21540570 CAAACTCAGTTGTTTATCCAATGTTAAGGTTTCCGATTGGCTCATGAAAggcttgatttttttttgaatatttcatcaatcttgaaaatttgaccgCTCAAATAATTATTCATTCCAAATTTGGAT-
i cb4.chrX               I 9 I 98
s caeSp111.Scaffold576      86039  39 -   128984 ----------------------------------------------------------------CAGATATTTTGACAGTATTAtaat----------------gttattt--------tttgtgtC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078093  51 -  4147112 --------------------------------------------------------TTCTCtctaaaaagtttgaataattcTCTCAT------------AACAATTATTT--------TCTGTGGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I
e caeRem4.Crem_Contig233    59484  69 -   113162 I

a score=-2806.000000
s ce10.chrX               2334640 56 + 17718866 gctcaagttacccagaatcgttactcctcctttaaAGTACATGAATCTTGTAATGA
s caeSp111.Scaffold576      86078 30 -   128984 -------------------GATACTATCCTATCATATTATTT---TCCGTTA----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078144 29 -  4147112 --------------------CTACCATTTCCTCCAATCTATT---CCTTATA----
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I
e cb4.chrX               17064410 98 - 21540570 I
e caeRem4.Crem_Contig233    59484 69 -   113162 I

a score=0.000000
s ce10.chrX               2334696 4 + 17718866 AATA
e caePb3.Scfld02_0        3078173 0 -  4147112 C
e caeJap4.Scaffold18213     65758 142 +   720316 I
e cb4.chrX               17064410 98 - 21540570 I
e caeSp111.Scaffold576      86108 0 -   128984 C
e caeRem4.Crem_Contig233    59484 69 -   113162 I

a score=15593.000000
s ce10.chrX               2334700 55 + 17718866 CTCTT-----CCCTTAATTTGCAACC-TTTTTCATCACACCTTC--GAAAACTGTCTGAAACG
s cb4.chrX               17064508 58 - 21540570 TCCTTTACAACCCTCAATTTGCAACCATTTCTCCTTC---CTGT--AAAAACAGTCTGAAACG
i cb4.chrX               I 98 C 0
s caeRem4.Crem_Contig233    59553 57 -   113162 CTCTTTCCTGTCCGCaatttgtaact-ttttacccaa---atca--aaaaactgtctgaaacg
i caeRem4.Crem_Contig233 I 69 C 0
s caeSp111.Scaffold576      86108 47 -   128984 ----------TTTGACACCTGTAACC-TCTGTCATCA---CCTT--GAAAACTGTCTGAAACG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078173 49 -  4147112 ----------TCCTCCATTAGCAAcc-tttttcatca---ttctcaaaaaactgtctAAAACG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     65758 142 +   720316 I

a score=125849.000000
s ce10.chrX               2334755 384 + 17718866  
s cb4.chrX               17064566 543 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    59610 462 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      86155 464 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078222 476 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     65900 426 +   720316  
i caeJap4.Scaffold18213  I 142 I 524

a score=-16670.000000
s ce10.chrX               2335139  87 + 17718866 CATAGCGCAA----------ACTTCTGGTTTTTTATTTTCAAA--------CGAAACAGTGT--------TGTTTTTTCAA---AGAGCAGGATTTTGAATTTAACTGCGCCACAT
s cb4.chrX               17065109  87 - 21540570 CGTTACATAA-CCATTacgaattttcagttc---atttttccG--------CATATCAGTAC--------CGTTATCTGAATTTGCTA---------AATTCCAATTCatctttat
i cb4.chrX               C 0 I 5
s caeRem4.Crem_Contig233    60072 100 -   113162 CGTTACAAAG-TGGCC----GTTTCCTGttt---gttcttttgaaaaaataaatttcaatat--------aTGTTAATGACTCCGCTATAAGTTTATGAATGCAATCAGTCTACAT
i caeRem4.Crem_Contig233 C 0 I 105
s caeSp111.Scaffold576      86619  97 -   128984 CGttacaaaaatgaga----attctcAGTTC---ACCTgaatg-cttttttgaaaccaatttt-------ctATTCCT----CTAATTGAAACCCAGGTTTAAAACTTTGCTATAT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3078698  96 -  4147112 CGTTGCAAAGTTTATT----ATTTCCTGTTT--GAGTTGAGCA--------AAAAACAGTGTTActtatgatatttttgaagataGTTCAAA--CAAGT----AATTACGCACCAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I

a score=-1085.000000
s ce10.chrX               2335226 3 + 17718866 TTT-
s cb4.chrX               17065201 3 - 21540570 -ttt
i cb4.chrX               I 5 C 0
s caeSp111.Scaffold576      86716 3 -   128984 AAT-
i caeSp111.Scaffold576   C 0 I 5
s caePb3.Scfld02_0        3078794 3 -  4147112 ATT-
i caePb3.Scfld02_0       C 0 I 222
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeRem4.Crem_Contig233    60172 105 -   113162 I

a score=277.000000
s ce10.chrX               2335229 8 + 17718866 TTAGTGTA
s cb4.chrX               17065204 7 - 21540570 -tcagata
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      86724 8 -   128984 TTTGTGTG
i caeSp111.Scaffold576   I 5 I 80
e caePb3.Scfld02_0        3078797 222 -  4147112 I
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeRem4.Crem_Contig233    60172 105 -   113162 I

a score=-216.000000
s ce10.chrX               2335237 89 + 17718866 GATAGTTAGTGTAGAATCGGACATTTTGAATTGCAACCTACATTTTTAAGTAATTTTGGTACTGG--TGTATTAGATGTTGTTTCGAAATT
s cb4.chrX               17065211 80 - 21540570 caaaATTATTGTACCCTC--ACAGCTCAAACCG--ATCTACATTGTT-------TCTGGGGTCGAAATGCGGTAAGTCTCTattctaaaaa
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3078797 222 -  4147112 I
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeSp111.Scaffold576      86732 80 -   128984 I
e caeRem4.Crem_Contig233    60172 105 -   113162 I

a score=-476.000000
s ce10.chrX               2335326 30 + 17718866 TTTGCAAAGAATACAACTCCATAGTGACAA
s cb4.chrX               17065291 22 - 21540570 -----cttgaaagcgGTGCGATG---ACAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    60277 26 -   113162 TCTATATAGAATATGACATTATG----TAA
i caeRem4.Crem_Contig233 I 105 C 0
e caePb3.Scfld02_0        3078797 222 -  4147112 I
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeSp111.Scaffold576      86732 80 -   128984 I

a score=-9193.000000
s ce10.chrX               2335356 64 + 17718866 G--TCTAA----------AATTCACTTTTTTT---TTTTTTTTT----------AATT------GAAAACATTTTGTGGTACGGTTGATACACAA---------------------
s cb4.chrX               17065313 80 - 21540570 ---GCTTGTCAcctaaaaatctcgaattgatg---attttatgT----------AGTTTCTC--GAAACCG------------------ACATGATTCGAGACGATCGTTGCTCTT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    60303 43 -   113162 ---Tctt-----------atttccgttttttc---tttttttct----------aatc--------aacCG------------------TCATGAC--------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      86812 75 -   128984 gtctcttattaatt----ttttccatttcctcgcatttttttctacacagaaaaaatttttcagaaaacta------------------acAGAAAT-------------------
i caeSp111.Scaffold576   I 80 C 0
e caePb3.Scfld02_0        3078797 222 -  4147112 I
e caeJap4.Scaffold18213     66326 524 +   720316 I

a score=-5652.000000
s ce10.chrX               2335420 22 + 17718866 CAACCGTA-ATATCGAGCACAAT
s cb4.chrX               17065393 21 - 21540570 --AAGGCAGACATAtagaaaaat
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    60346  9 -   113162 ---------ACATGTAAT-----
i caeRem4.Crem_Contig233 C 0 I 89
s caeSp111.Scaffold576      86887 13 -   128984 CTACTCAAGACAC----------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079019 21 -  4147112 CGACTGTATATAccgaaaaag--
i caePb3.Scfld02_0       I 222 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I

a score=-13408.000000
s ce10.chrX               2335442 111 + 17718866 ------GGACCACAATTTAAGTTTTATGTGATATTTTGAAAATGGG---AAAAATCACAATTTTCTTTTTTGGCATGATAT-------------TTAGACATTTG------------AAAATTATAGAAGCTGTTGTAGACAATT
s cb4.chrX               17065414 133 - 21540570 gttctaaaattaGGAAATAAATTCGTAGTGTAAGGGATACAGTACCGGGAAgaatga----tttatttttcagtagaaGAAGGTCAATTTGAGAACACGAATTTATTAT--------AAAATCCAACAAGTTGAAATGAGCAGAT
i cb4.chrX               C 0 I 3
s caeSp111.Scaffold576      86900  63 -   128984 ------------------AAACTATAgatttgatttaaaaa--------aaggttgG----TTCATTT--------------------------TCATGGGTTTT------------AAAAT--ATCATGTTG------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079040  96 -  4147112 ------agagaatgaggTAAGCCATTGATGCCACTCAGAAAATATC---AAGGATTG----TT--TTT--------------------------ACCGGGGTGTCTTGTCTCTTCGGAAGAT--GTCAAATTGAAGAGA------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeRem4.Crem_Contig233    60355  89 -   113162 I

a score=-34044.000000
s ce10.chrX               2335553  92 + 17718866 TTCTCACTGA---CGTCACC------CCACAA----TTATTGAATAGTGTTCACAT-----TTTAAAATG------------TGTCAATT---------------------------TACTTTTTTCTTCTTAGCAACATTTAT-----------------------TTGCA-
s cb4.chrX               17065550 163 - 21540570 TAGTTGTTCAAAGTTATaacaaaaatctattttcagtcaattattggccattttgaccattttcagaaaactgtagctcggctgtcaagatTTGACAATTATGAGAAATTTGGAGGGTGACTTTTCC---------ACGTTTTTAGttaaaaaatgggtcaaaaagagtgcc-
i cb4.chrX               I 3 I 5
s caeRem4.Crem_Contig233    60444  90 -   113162 TCCTAGCTCA---CCTTACCAGAAATTCACGT---GTCCATTGGCGGAGATGTCAG-----TTTAGAAGA------------TGTCAATA---------------------------TGATGTTTTT---------ATGTTTAT-----------------------GTGCA-
i caeRem4.Crem_Contig233 I 89 I 82
s caeSp111.Scaffold576      86963  49 -   128984 --------------------------Tttcgt----tttatt----------ttat-----ttcaaaaat------------aggtaAAT---------------------------TAACTA-----------------ATAT-----------------------TTACct
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079136  41 -  4147112 --------------------------TCACAT----TTTCTT-----------------------------------------GTCAAAT---------------------------TAAGCATTC-----------GGTATAA-----------------------GCACTG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I

a score=-8066.000000
s ce10.chrX               2335645 45 + 17718866 ----ATTAA-------TAATAA---------TATCAATG------GTTCGATTCAGATTGTTTAACGAGAT---------------------
s cb4.chrX               17065718 92 - 21540570 ggaaatgaaaaaaatctgaaaaacaaggaattttcaaaagtttctgtGTAAGCGAAGTTTTCAATTcaggtctgttttataccgttcaatat
i cb4.chrX               I 5 C 0
s caeSp111.Scaffold576      87012 34 -   128984 ----attaa-------tgaaaaaatgttacTTTTCAATG--------------------------TGAGat---------------------
i caeSp111.Scaffold576   C 0 I 26
s caePb3.Scfld02_0        3079177 34 -  4147112 ----CTTGA-------TATAAAATAAGCATATTGTGAAA--------------------------TTGGAT---------------------
i caePb3.Scfld02_0       C 0 I 7
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeRem4.Crem_Contig233    60534 82 -   113162 I

a score=-2459.000000
s ce10.chrX               2335690 19 + 17718866 CCTCAAC------AAAAAACGGTGA--------
s cb4.chrX               17065810 30 - 21540570 tttcaaagtgatcagaaGCTTGAGTgctga---
i cb4.chrX               C 0 I 18
s caePb3.Scfld02_0        3079218 31 -  4147112 tttctag--aaatagaattcagagaaacgaaaa
i caePb3.Scfld02_0       I 7 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeSp111.Scaffold576      87046 26 -   128984 I
e caeRem4.Crem_Contig233    60534 82 -   113162 I

a score=618.000000
s ce10.chrX               2335709 10 + 17718866 -CAGACAGAAC
s cb4.chrX               17065858 10 - 21540570 -tagACAAGAT
i cb4.chrX               I 18 C 0
s caeRem4.Crem_Contig233    60616 10 -   113162 -catacaaaag
i caeRem4.Crem_Contig233 I 82 C 0
s caePb3.Scfld02_0        3079249 10 -  4147112 ccagggaaaa-
i caePb3.Scfld02_0       C 0 I 14
e caeJap4.Scaffold18213     66326 524 +   720316 I
e caeSp111.Scaffold576      87046 26 -   128984 I

a score=-32549.000000
s ce10.chrX               2335719  81 + 17718866 ----------------AAAAG-----------GCAATTGAAATGAGGTGGGATTTTTTTA----------------------------TCTGGAGTTTTTTTTTTCAAATTTTCTATGTGATAAAACTGACCA--------------------TAT---
s cb4.chrX               17065868 111 - 21540570 AACCGgtaatcaactgaaaaacacgatTGTTCATACCTG--------------TTTCctg----------------------------attccaaatttctt-----aatttcccATCTGAT-ACTGTATCTAATAGGCGTAACCCaaaacattaaatt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    60626  40 -   113162 aa-----aaaaaaaagaaaaa------------------------------------------------------------------------------------------------------aatatatcta------------CAGTATCTCAAATT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      87072  29 -   128984 ----------------AAGAG-----------ACAACTA--------------TTTTCTA----------------------------ATTGAAG----------------------------------------------------------TGC---
i caeSp111.Scaffold576   I 26 C 0
s caePb3.Scfld02_0        3079273  98 -  4147112 ----------------AGGAGCACTCAT----ACAATTA--------------TTCTGTATAAACATAAAAAACGTTCATGAAActctattaaaaaaatttg-----gtttttcca-------AAAGCATCTA------------TCAGTTCTTAA---
i caePb3.Scfld02_0       I 14 C 0
e caeJap4.Scaffold18213     66326 524 +   720316 I

a score=208536.000000
s ce10.chrX               2335800 517 + 17718866  
s cb4.chrX               17065979 501 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    60666 509 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      87101 480 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079371 502 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     66850 378 +   720316  
i caeJap4.Scaffold18213  I 524 I 414

a score=-11853.000000
s ce10.chrX               2336317 43 + 17718866 GAGATTTAAAGTTTAA----AATTTT---------AGTGAATCTCAAAAAAATCTC--------------------
s cb4.chrX               17066480 52 - 21540570 GAGTGTTTGATTTTAT----TCattcgaaaagttttggaagcttttaaaaaatccc--------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61175 40 -   113162 gagttttgcattttta----tgtttc------------aaatttataaagtATTTC--------------------
i caeRem4.Crem_Contig233 C 0 I 237
s caeSp111.Scaffold576      87581 29 -   128984 AAGTGTTTCG----------TATTTCT---------------------AATTTATCAA----------------TC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079873 75 -  4147112 gagt-tttcggtctgaaatttatttctgaaacttgaaaaattgaaaaaaatagatccAAAACACAATTTGTCATTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     67228 414 +   720316 I

a score=-3997.000000
s ce10.chrX               2336360  71 + 17718866 ---------AATATACTCTTTTAC---------GTAATTT-------------------ATGTGAAATTTTTAGAAA----TCACGATTTTATGTGTCGC-----------GAGTTTA-------TTTTT
s cb4.chrX               17066532 123 - 21540570 ttTAGAATAATTTTCATGCATCACCAGCGTTTTGTTGTTTTATTAGTCAGTGTTTCTATATTTGAAATCTTCCGGAAGACTCGAAATTTATATGCATCGCTActaaaaaaagagattt-------tcgcc
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      87610  86 -   128984 ---------AAGTTAATATTGCAC---------ACAAATCCAAAACTCGGGA----CAGAtgaaaagaattctgaaa-----------tttatgcATCGC-----------aaagttttgttttattgTT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3079948  80 -  4147112 ---------ACTTTTATGTTGcat--------gaaaaatttaaaattcggCA-----ACATAAAAAGGATTTCGGGA----------TTTTATGCATCAC-----------ggggttt-------ttgtt
i caePb3.Scfld02_0       C 0 I 360
e caeJap4.Scaffold18213     67228 414 +   720316 I
e caeRem4.Crem_Contig233    61215 237 -   113162 I

a score=929.000000
s ce10.chrX               2336431 8 + 17718866 AGAATTTG
s cb4.chrX               17066655 8 - 21540570 gaaattta
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      87696 8 -   128984 TGAATTCG
i caeSp111.Scaffold576   C 0 I 196
e caePb3.Scfld02_0        3080028 360 -  4147112 I
e caeJap4.Scaffold18213     67228 414 +   720316 I
e caeRem4.Crem_Contig233    61215 237 -   113162 I

a score=-2978.000000
s ce10.chrX               2336439 756 + 17718866  
s cb4.chrX               17066663 634 - 21540570  
i cb4.chrX               C 0 C 0
e caePb3.Scfld02_0        3080028 360 -  4147112 I
e caeJap4.Scaffold18213     67228 414 +   720316 I
e caeSp111.Scaffold576      87704 196 -   128984 I
e caeRem4.Crem_Contig233    61215 237 -   113162 I

a score=-3146.000000
s ce10.chrX               2337195 56 + 17718866 GAAATAATATTTGCTGCCAGTTGGAACCT----TCAAATGCGTA------------GCTTTTTCTAACTTTT
s cb4.chrX               17067297 25 - 21540570 GAAA---------------TTTATAAGCT----atataaactca----------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61452 69 -   113162 GAAACACTATT---TGTCGTTCGGAAACTTCTGACAGAGATTCATTAAGGGAGTAGATTTCTCATAACATTT
i caeRem4.Crem_Contig233 I 237 C 0
e caePb3.Scfld02_0        3080028 360 -  4147112 I
e caeJap4.Scaffold18213     67228 414 +   720316 I
e caeSp111.Scaffold576      87704 196 -   128984 I

a score=1364.000000
s ce10.chrX               2337251 9 + 17718866 TTCAAAAAT
s cb4.chrX               17067322 6 - 21540570 ---aaaaac
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61521 9 -   113162 GTTAAGAGA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3080388 9 -  4147112 ttcaaaaag
i caePb3.Scfld02_0       I 360 C 0
e caeJap4.Scaffold18213     67228 414 +   720316 I
e caeSp111.Scaffold576      87704 196 -   128984 I

a score=-7868.000000
s ce10.chrX               2337260  4 + 17718866 TAAG---------------------
s cb4.chrX               17067328 24 - 21540570 tatgatatttcatttccagatt-tt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61530 25 -   113162 TATGCTTCTTTATCGTTTGCTTAAT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      87900  4 -   128984 TAAA---------------------
i caeSp111.Scaffold576   I 196 C 0
s caePb3.Scfld02_0        3080397  9 -  4147112 taaaaat----------------tg
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     67228 414 +   720316 I

a score=102103.000000
s ce10.chrX               2337264 133 + 17718866 TTTACAGCCAAGCACCGTACGATCAGCAAAAGAAGAATCAAGGCTACGATCTCAACAGCCACCAAGCAACATTCAACGAGTTCAGGCA-----------------------------------------------------------------------------ATCCGTAGCCGTCCACAGTCCACTGCATCTTACAACAGTTTAGGT
s cb4.chrX               17067352 133 - 21540570 ttttcagcccagCACAGTCAGATCCGCAAAAGAAGAATCAAGGTTACGCTCACAACAGCCACCGGCAAATATACAGAGAGTTCAAGCA-----------------------------------------------------------------------------ATCCGCAGCCGTCCCCAATCTACAGCATCCTATAACAGTTTAGGt
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61555 185 -   113162 ATTTCAGCCAAGTACGGTCAGATCTGCCAAGGAAGAATCAAGGTTACGCTCCCAACAGCCACCCAGCAACATTCAGAGAGTGCAAGTA-----------AGCCCGCGAGTCTGTCT--------CGTCTCTTTTCCTAACTAAATAATGT------TTCCAGGCTATCCGCAGTCGTCCCCAATCTACAGCATCCTACAACAGCCTAGGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      87904 181 -   128984 -TTTCAGCCAAGCACCGTCCGATcagcaaaagaagaatcacGACTACGCGCACAACAGCCTCCAAGTAATATTCAGAGAGTTCAAGTG-----------AGACCTCAActctttgt---------ttctcttctcaaa--cgaaattttg------tttcaggcTATTCGCAGTCGTCCACAATCTACAGCATCTTATAACAGTCTAGGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3080406 183 -  4147112 tttccagCCAAGCACAGTCAGATCAGCGAAAGAAGAGTCAAGGCTACGATCGCAACAACCACCCAGTAATATACAACGAGTCCAAGT------------AAATCTCTTCCCACTAT---------GAAACAACTCAAAACCTATGTTTTA------TTTCAGGCCATTCGCAGTCGCCCACAATCCACAGCATCCTACAACAGTTTAGGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     67642 210 +   720316 TTTCCAGCCAAGCACAGTCAGATCTGCAAAAGAAGAATCTAGGCTACGATCACAACAACCACCCAGTAACATTCAGAGAGTTCAGGTTTGTGATGAATAAACATCCAAGTTTAtgtacaacaacaacaacaacaaaaaactttattttaatgcaatttttaGGCTATACGCAGTCGACCACAATCCACAACGTCTTACAACAGTCTCGGT
i caeJap4.Scaffold18213  I 414 I 385

a score=-12382.000000
s ce10.chrX               2337397 27 + 17718866 AAC--ATTTTTCGTATAATTAGCACCAGT
s cb4.chrX               17067485 11 - 21540570 att----cctcctt--------------t
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    61740 23 -   113162 CTG----TCGACTGATAacga--aattat
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88085 20 -   128984 TAG-------TCCTAAAATCA--AATGGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3080589 20 -  4147112 GAGAGTGCCATCCTGGAA---------GC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     67852 385 +   720316 I

a score=86086.000000
s ce10.chrX               2337424 205 + 17718866 TTCAGTT------------TTTTT---TTCCAGCTTCATCCGGAATGGAAAATCTCCAGTGGCGAAATTCAGTTATGTCCTCTGTGACTCCAGATAATCGCCGGCATACGCTGTACGACGAAGAAGACAACCCACGAGTGGTGA---------------------GTTGGAATATTTT-GG-------GCTTGAAAAAGAAGACAAGGGTGTTATTAACATGTCTCATTTATTTTTGAGATCAAGG-----GGG
s cb4.chrX               17067496 214 - 21540570 tttctttagAAATCCCACATTTTGGTTTTCCAGCATCATCTGGAATGGAGAATATCCAGTGGAGAAACTCCGTAATGTCTTCTATCACTTCCGATAATCGACGACACACTTTATACGACGAGGAGGATAATCCGAGAGTGGTGA---------------------GTCCGtttttttG-TG-------GTTGttataggaaaaaaa-------attaacaaaaattatttatt----agaTGTTACCACCAATT
i cb4.chrX               C 0 I 192
s caeRem4.Crem_Contig233    61763 225 -   113162 tttgttt---aaCCCAAAAGTTTG---TTTCAGCCTCATCAGGAATGGAGAATATTCAATGGAGAAACTCTGTAATGTCGTCTGTAACCCCAGATAATCGTAGACATACTTTGTATGACGAAGAAGACAATCCACGTGTGGTAAGt---------------gtttgtgtgtttttttt-tgttgcaaagtTGAAATGAGAACACACTG--GCTATTAACATATCTCCTTTATTTCCaagattttgt-----gtt
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88105 195 -   128984 CTCTCAT---ATTTC----GTTCT---GTTCAGCATCATCAGGAATGGAGAACATCCAATGGAGAAATTCCGTCATGTCTTCTGTAACTCCAGATAATCGTCGGCATACCTTGtatgatgaagaagacaatCCAAGAGTTGTGA-------------------------GTCTTTTTTGTG-------ATGTTTAAAA------------TTTGTTAACATATCTCTGATTTTATTGAGATTTACG-----GTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3080609 205 -  4147112 TTCATCC---AATTG----TTTTA---TTCCAGCGTCGTCAGGAATGGAGAACCTTCAATGGAGAAACTCTGTCATGTCATCTGTAACCCCAGACAATCGTCGACACACTCTATATGATGATGAAGACAATCCCCgagttgtga-------------------------gtttttgtt-cg-------ACTTTCATAAAAGTACACTGTGGTTATTAACACA-CTCATTTATTGATGAGATTTTTG-----GGG
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     68237 200 +   720316 ------------TTTAAACCTTTT---TTCCAGCTTCATCAGGAATGGAAAACCTGCATTGGAGAAATTCAGTGATGTCATCAGTCACTTCGGATAACCGAAGGCATACCCTTTACGACGAGGAAGACAATCCCAGAGTGGTGAGTTAAAATAAATAGACAAGTGGGCGGTgctttct-tt-------gtttttaa-----------------attaa---------ttttttattaacatTCTGG-----GGT
i caeJap4.Scaffold18213  I 385 C 0

a score=910.000000
s ce10.chrX               2337629 1 + 17718866 T
s caeRem4.Crem_Contig233    61988 1 -   113162 t
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88300 1 -   128984 T
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3080814 1 -  4147112 T
i caePb3.Scfld02_0       C 0 I 174
s caeJap4.Scaffold18213     68437 1 +   720316 T
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17067710 192 - 21540570 I

a score=119.000000
s ce10.chrX               2337630 7 + 17718866 ATAAACT
s caeRem4.Crem_Contig233    61989 7 -   113162 ttcaaca
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88301 5 -   128984 --TGACA
i caeSp111.Scaffold576   C 0 C 0
s caeJap4.Scaffold18213     68438 7 +   720316 TTTCACT
i caeJap4.Scaffold18213  C 0 I 112
e caePb3.Scfld02_0        3080815 174 -  4147112 I
e cb4.chrX               17067710 192 - 21540570 I

a score=-2804.000000
s ce10.chrX               2337637  95 + 17718866 ACTTTTAAATTTCATCAAGAGCCAACTAGAGT-TTGTTTTAA-------GCAAG---TGATAATAGTGGGAAAAGCTGGGAagagagagagtgag---aga-----------------gggggaga
s caeRem4.Crem_Contig233    61996 107 -   113162 CCATTTAG---------AGAACAAATTA-----TTGTTGCAT--TTGTGGAATC---TTAGTAAAATCAAAAGCGCACAGTAAAGCAAAAGTTAAATTGGATTGCAAGTAAAGCAGGAAGAGGTGA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88306 100 -   128984 CCAACTGg--------aaggaaaaattaaagtCTTGTCTCATAGTCGCAGTATTTGattagaagagagaaaaagggagagagaagctagaaataa---gaatt---------------aaaggtga
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3080815 174 -  4147112 I
e caeJap4.Scaffold18213     68445 112 +   720316 I
e cb4.chrX               17067710 192 - 21540570 I

a score=-4016.000000
s ce10.chrX               2337732 32 + 17718866 gagaAAACGTACGAAACATTGAACAGAAATTA---
s caeRem4.Crem_Contig233    62103 25 -   113162 GAGCACTCTT------TATTGGACA-AAGTTA---
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576      88406 11 -   128984 aag--------------------ca-agaTTA---
i caeSp111.Scaffold576   C 0 I 133
s caeJap4.Scaffold18213     68557 34 +   720316 gtgaaaacagAGTATTTATCgatta-gaactgttc
i caeJap4.Scaffold18213  I 112 C 0
e caePb3.Scfld02_0        3080815 174 -  4147112 I
e cb4.chrX               17067710 192 - 21540570 I

a score=-8402.000000
s ce10.chrX               2337764 54 + 17718866 GATAGTAAT-TTTTTTGCTGCTTATTGA---------AGAACATCGTCATA------CATGACTTGAACA
s caeRem4.Crem_Contig233    62129 61 -   113162 GA--------TGCTCCGGTTGTTGTTCAGTCTCGGAGAGAAGCTCGCGGTAGT-CATCCTCACTAAAATA
i caeRem4.Crem_Contig233 I 1 C 0
s caePb3.Scfld02_0        3080989 63 -  4147112 GATGGTAACTTGTTCCGGTTCGGATGAATCTTCGGCAACAAGATCTTGATAGT-CGCGCTCACT------
i caePb3.Scfld02_0       I 174 C 0
s caeJap4.Scaffold18213     68591 42 +   720316 ----------------ggttCTTTTC-----------GCCACGTCTACATTGTACGGTTCTACTTCGAC-
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17067710 192 - 21540570 I
e caeSp111.Scaffold576      88417 133 -   128984 I

a score=-9919.000000
s ce10.chrX               2337818 41 + 17718866 GGAAGCATCTGG---ACTGCCG----ATGAGGATCTGTAAATTTTCAA
s cb4.chrX               17067902 36 - 21540570 GGTCACCTCggg---tctgaaa----atgag-----atttatTAGCTG
i cb4.chrX               I 192 I 5
s caeRem4.Crem_Contig233    62190 29 -   113162 -GACAT---------GATGAGA----AACAA-----GTCTGTTAGATG
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3081052 30 -  4147112 ------GTAAGA---ATTGAAC----ATCAG-----TTATATTCCTAA
i caePb3.Scfld02_0       C 0 I 4
s caeJap4.Scaffold18213     68633 38 +   720316 ---GACTTCCGGGtaactgaaaaattaaaag-----tttttttcac--
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      88417 133 -   128984 I

a score=27424.000000
s ce10.chrX               2337859 122 + 17718866 ACTGAAAAAAAAAACGGC-------GGTTTTAACAAGTTAACTTACGGAGAATCATTCTGGTCTCCAACGAATCGTTTTCCAATGCGGAATCCGTAACGTCCAACGAGAAGGTTGCGACGTTTCTCC----AC
s cb4.chrX               17067943  98 - 21540570 TCTGAAATC-------------------TTTA---TTTTAACTCACCCT------TGCTCATCCAGG---GAACGCTTTCCAATGCGGAATCCATAGCGTCCGACAAGCAAGTTACGGCGCTTCTCC----AA
i cb4.chrX               I 5 C 0
s caeRem4.Crem_Contig233    62219  95 -   113162 ------AAT-------------------TTTA---AGTCAACTTACTTGAG---ATTCTCATCATCG---GATCTCTTTCCGATGCGGAAACCATAACGTCCGACGAGAAGATTGCGGCGTTTCTCC----AT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88550 108 -   128984 TCTGCGATCAGAACC------------TTGTA-------AACTCACGTTAGTTCATCTTCCATTCCA------CGTTTTCCAAGGCGGAATCCATAACGTCCGACAAGAAGGTTACGTCTCTTTGCAACCGAA
i caeSp111.Scaffold576   I 133 C 0
s caePb3.Scfld02_0        3081086  99 -  4147112 TTTTCAA---------------------TGTA------TGACTTACGTGAGGTCTTCTGGCTCCTCG---GATCGTTTTCCAATGCGGAATCCGTAACGTCCAACGAGAAGATTGCGTCTCTTTTCA----AG
i caePb3.Scfld02_0       I 4 C 0
s caeJap4.Scaffold18213     68671 104 +   720316 ----------------aCTATACTAGCTTTTAACAACAAAGCTTACT---GATAGTCCTCGTCCCCG------CGTTTTCCGATGCGAAATCCATACCGGCCAACCAGAAGGTTACGACGCTTGTTT----AC
i caeJap4.Scaffold18213  C 0 I 5056

a score=-11870.000000
s ce10.chrX               2337981 62 + 17718866 ATCGATA--TCCGAGTCCGCTGCCACTGTTGGTCGTGGATGCTCCTTCTCGTACT-TTTCTCTGT
s cb4.chrX               17068041 33 - 21540570 ATCGATG-----GTATCAGC--------------------------TGCTCTACT-TGCCCTTGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    62314 46 -   113162 GTTAATC-----Tcatcagcttc----att----------tttctgtgctCTGCTGTTTCCGCGC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88658 54 -   128984 ATCTCTTCATTAGCCTTGGCCGC----CTTGCGTGCAG--CTTCTAGatcctctt-tttgt----
i caeSp111.Scaffold576   C 0 I 48
s caePb3.Scfld02_0        3081185 52 -  4147112 ATCAATT--TGAGCATTGGCCGC----GTCAATTGCGG--CAgccctcttctcct-tctcc----
i caePb3.Scfld02_0       C 0 I 3
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-7416.000000
s ce10.chrX               2338043 29 + 17718866 AGGCAAGTGCTCTGTCACGGATTTGTTTC----------------------
s cb4.chrX               17068074 28 - 21540570 --------------TGACTTTCCTTCTTTCTGAGA---------CTGTTGC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    62360 37 -   113162 --------------TCACGGTCCATCTTCTCAAGATAAGCTAGTTCGTTAC
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3081240 35 -  4147112 -------tGAT---CAACGTACCGCTTGGACTTGATGAGGAAATC------
i caePb3.Scfld02_0       I 3 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e caeSp111.Scaffold576      88712 48 -   128984 I

a score=-4915.000000
s ce10.chrX               2338072 10 + 17718866 TCCGTTTCTA-
s cb4.chrX               17068102 10 - 21540570 CATGCTTCCA-
i cb4.chrX               C 0 I 61
s caeRem4.Crem_Contig233    62397 10 -   113162 GGCGCATTTG-
i caeRem4.Crem_Contig233 C 0 I 14
s caeSp111.Scaffold576      88760 10 -   128984 -TCAGTGTAAA
i caeSp111.Scaffold576   I 48 C 0
s caePb3.Scfld02_0        3081275  5 -  4147112 ------CTTGT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-9623.000000
s ce10.chrX               2338082 100 + 17718866 CGTACAAAGGTGGGAGTCGAGAAGGTGGGG------TTGGAAATCGCAA---------CCAGGAAGGATCTTCCGATTG-----GGACTTTAGGAAGCGTTGGCGCCATTGTTCAGGTGA
s caeRem4.Crem_Contig233    62421 109 -   113162 AGTAGCCTGTCGGAAGACGAGACTTTTGTC------CTGGGAGCTTGTT---CATAATCCAGTCGGGCAAGGATGGCTTTGT--TGAAGCCATCATTTGCTCTCTCCAGTCAGCGGAAGG
i caeRem4.Crem_Contig233 I 14 C 0
s caeSp111.Scaffold576      88770 103 -   128984 TATACCC---------ATGTGGGTACTTGG------TTGGCAGGTTTGGATCTCTGTACCAGCTTGGATTAGTCGGAGCAGGAGTGCGTCCGATGTAC--TGGTGCCAAGCATTTGGATC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3081280  97 -  4147112 TGTATCC---------ATGAGAATTCTGGGATGCTCCTGGCAACTTCAT---------CCAGCCTGAATGAGTTGGCTT-----TGCCTCCAAAATATCGCGTCTCCATTGATCTGGAGC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17068112  61 - 21540570 I

a score=6211.000000
s ce10.chrX               2338182 75 + 17718866 TTCAGTTGCTCTGTAACTTGCGTTAACCACAATGATGGCACCAAGAAGGCTGAGAATTGTAAC---TGCTCTCATGAC
s cb4.chrX               17068173 72 - 21540570 TTCAGTTGGGCGGAAAGTAGCGTTCACTAGGAACACAGCTCCAAGGAGCAAGAGTAGAACAAt---cggtttcat---
i cb4.chrX               I 61 C 0
s caeRem4.Crem_Contig233    62530 74 -   113162 CTCAGTTGGATGCAAGTTTGCATCAGCAAGGATCACAGAACC---GAGAAAGAGTAAAATGAGACACGAATTCATGG-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88873 75 -   128984 CTTAGTTGGCATGTAGGTAGTCACAGCTAGGCCGATGAAGccaagaagaaagagaagaacgaG---AGGTTTCATGAT
i caeSp111.Scaffold576   C 0 I 23
s caePb3.Scfld02_0        3081377 72 -  4147112 TTTAGTTGGCACATAGGATGCCGCCGAAAAGACGAGACACCCGAGAAGgagtaaaaaaatt------ggtttcatgAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-5749.000000
s ce10.chrX               2338257 43 + 17718866 TTTAAAGAGGAGGAAGTACTTTGAGGAATAGTTGTATAACTGG
s cb4.chrX               17068245 33 - 21540570 -------tttttccagagccGCTGGGA---GTTCTGAAAAGAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    62604 38 -   113162 -TGGAAGGTCGGCCCTCACTGTCGAGA----TTCTGTAAGGGG
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3081449 24 -  4147112 ---------CGTCGTCAACCTCGAGGG---GTTCTG-------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e caeSp111.Scaffold576      88948 23 -   128984 I

a score=72329.000000
s ce10.chrX               2338300 511 + 17718866  
s cb4.chrX               17068278 576 - 21540570  
i cb4.chrX               C 0 I 84
s caeRem4.Crem_Contig233    62642 538 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      88971 557 -   128984  
i caeSp111.Scaffold576   I 23 C 0
s caePb3.Scfld02_0        3081473 536 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=5342.000000
s ce10.chrX               2338811  83 + 17718866 TTTGAGGGCCTAATTGTATCCAA---TAAACCGGGGGGTTTCTGCTTGTCGGAACCT---TTTTTCGG--------GGTGTTTTTT-----------GCCTTGCTGAG
s caeRem4.Crem_Contig233    63180  99 -   113162 TTTGGATATCTGATTGTATCCAA---TCGGCTAGCGATTTC---CTCGTCGGAGCCC---TTTTCCAAATGCCACAGACTTTTTATGAGGTACCGTAGTCCCGTTGAG
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      89528  99 -   128984 TTCGGGACTCTAATTGTATCCAGCGGTAGATGATCGATTTC---CTCGTCGGAAGCCGTCTCCCTCGAACGCAT------TTTTCtgagctaccgtaatcccatTGAG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3082009 102 -  4147112 TGAGGGACACTACATGTTTCGAAGAGTCATTGATGGAGTTC---CTCGTCGGAAGTGA--TGCTTGGTATGTGCC-GGTGtttttttGGCTACCGTAGTTCTCTTCGG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17068854  84 - 21540570 I

a score=18193.000000
s ce10.chrX               2338894 110 + 17718866 --CTGCGCTTTCGTCAGAGGTATTTTACTCTTTAAAAAA-------CGAAAG--CTTGAGAGCTC------GCTGATTGATGGATG-----------GTCCCAAAGGACTTGAAGCAGGAACTGGTTTTTTGGTCTCC
s cb4.chrX               17068938 124 - 21540570 --CGGTGGTTTTGTCAGCAct-tctttttctggaaaaaacgaGCACTGGAGGGTcc-----tttt------tttgattgatgGGAAGTCAGTTTCTTACCGCTGGGGATTAGAAAAAACGACTGCTTTCTCGAACGCG
i cb4.chrX               I 84 C 0
s caeRem4.Crem_Contig233    63281 109 -   113162 --CGGTGCTTGCGTCACCACT-TTTTTGCCTGGAAAAAA---------------CC-----TTTCAGTCCAGCTGATTGATGGGCA------TTCTTACCCCGAGGGACTCaaaaaaaCAGCTGGTTCCTTGAACCCC
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      89627 113 -   128984 CCAATCTCTTGCGTCagctgt-tttttctctgaaaagaa----------aag--ccCAGGAGTTT------GCTGATTGATGGATA------GGCTTACCCcgaaggaattgaaaaaacgacTGGAACATTGATGCGT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3082111 115 -  4147112 CCAGGCTCTTGCgtcatcgtt-tttttctcttaaaaagC----------GGGGACTCGAGATGTT------GTTGATTGATAGATA------GGCTTACCCAAGtgtattccagaaaaaacctGGTTGCCTGATCTCC
i caePb3.Scfld02_0       C 0 I 25
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-4213.000000
s ce10.chrX               2339004 16 + 17718866 ----AAGTGCACGAA---------------CGGAA---
s cb4.chrX               17069062 33 - 21540570 --TTGAGCACTTTATCCATCTTTTGGGGAACGAAA---
i cb4.chrX               C 0 I 4
s caeRem4.Crem_Contig233    63390 28 -   113162 --TTCGGCACTTCCTGCATCTTTTG-----CAGAA---
i caeRem4.Crem_Contig233 C 0 I 3
s caeSp111.Scaffold576      89740 28 -   128984 GTTTGTGTGTGTTGT-----TCTTG-----CAAAGATg
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3082226 25 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=20584.000000
s ce10.chrX               2339020 71 + 17718866 CATTTCGTTTTCCGGGACGCGAGCGCGTGTTAATCATGGATTGGTAGTGTTTGTTGATGTTGTTTCTGG-------AA
s cb4.chrX               17069099 71 - 21540570 TAGCGCGTTTTCCAGGACGGGGTCGAGTGAGTGTTGAGGTCCGATAGAATTGGTGAATGTCGTgtctaa-------aa
i cb4.chrX               I 4 C 0
s caeRem4.Crem_Contig233    63421 78 -   113162 CACTGCGTTTTCCGGGACGGGCACGAGTGAAAGTCGAAGTACGGTAGAATTTGTTGATATTCTTTCTGAAGAAGTGAA
i caeRem4.Crem_Contig233 I 3 C 0
s caeSp111.Scaffold576      89768 71 -   128984 cacttctttttcctggTCGCGCACGAACGAATTTCGAAGCCCAATACGAATTCTTAATGTTCTTCCTGG-------Aa
i caeSp111.Scaffold576   C 0 I 1
s caePb3.Scfld02_0        3082251 71 -  4147112 CACTTCTTTTTCCTGGTCGGCCACGAGTGTAGTGTTTGGTTAGGTATTCCTTGTTAATGTTCCGTCTGG-------AA
i caePb3.Scfld02_0       I 25 I 212
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-4905.000000
s ce10.chrX               2339091 39 + 17718866 ------AAAGTTGTTCTG----ATTGTAAATTTGGAAAACCTAAAAATA------
s cb4.chrX               17069170 36 - 21540570 -----taaaattttggaatttcagggaaaaaatgaaaggtC--------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    63499 37 -   113162 -----CAGATTATTG-------ATGATGGATATTAAAGGCTTGATAATA------
i caeRem4.Crem_Contig233 C 0 I 1134
s caeSp111.Scaffold576      89840 51 -   128984 gaaattgaattgaaggag----aaagaagaaatggaaaatttgatGAGCTCTTCA
i caeSp111.Scaffold576   I 1 C 0
e caePb3.Scfld02_0        3082322 212 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=-51.000000
s ce10.chrX               2339130 8 + 17718866 ATTAGTTT-
s cb4.chrX               17069206 8 - 21540570 ACTAATTT-
i cb4.chrX               C 0 I 1396
s caeSp111.Scaffold576      89891 8 -   128984 -CTGAGttc
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3082322 212 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e caeRem4.Crem_Contig233    63536 1134 -   113162 I

a score=627.000000
s ce10.chrX               2339138 41 + 17718866 GCAAAAACTACTGGTCTAGAATTATCAAATGTTTAGAATGT
s caeSp111.Scaffold576      89899 41 -   128984 acaaaaaagtttgatcAGAAACCATTCGAAAACTATGATGT
i caeSp111.Scaffold576   C 0 I 1028
e caePb3.Scfld02_0        3082322 212 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17069214 1396 - 21540570 I
e caeRem4.Crem_Contig233    63536 1134 -   113162 I

a score=0.000000
s ce10.chrX               2339179 642 + 17718866  
e caePb3.Scfld02_0        3082322 212 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17069214 1396 - 21540570 I
e caeSp111.Scaffold576      89940 1028 -   128984 I
e caeRem4.Crem_Contig233    63536 1134 -   113162 I

a score=2839.000000
s ce10.chrX               2339821 167 + 17718866 AAAAAACATGCGAAAAATTTCAAAA-AAACTCACAAAGATTCGGTGTTTTTCTGGTTTCTCATCAGCTCAAAAATACGTGTCAATTGATCTAAACTTTGCCTAGTGTGTGTTTCTTTCCGTTGTTCTGCTTTCAAAAGACACTCAACTTGCTCGAGACGTTTTCTGAA
s caePb3.Scfld02_0        3082534 153 -  4147112 AAAAGGATTGTGGAGATTTACAAAACAAACTCACAGAGGGGCAGTGTTCTGTTGGTTCTCCATAACCTCGGCGATGCCAAGAAGTTGGTCCAAA-------TAG--------AtcttctgttcttcttctgcaTCGGTGCATTCAATCAAATCGAGTTTCTTTCTGAA
i caePb3.Scfld02_0       I 212 I 1283
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17069214 1396 - 21540570 I
e caeSp111.Scaffold576      89940 1028 -   128984 I
e caeRem4.Crem_Contig233    63536 1134 -   113162 I

a score=0.000000
s ce10.chrX               2339988 941 + 17718866  
e caePb3.Scfld02_0        3082687 1283 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17069214 1396 - 21540570 I
e caeSp111.Scaffold576      89940 1028 -   128984 I
e caeRem4.Crem_Contig233    63536 1134 -   113162 I

a score=685.000000
s ce10.chrX               2340929 20 + 17718866 TTAAACATTAAAAA---AAAACC
s caeRem4.Crem_Contig233    64670 23 -   113162 Ttaacttctaaaaattgaaaacc
i caeRem4.Crem_Contig233 I 1134 C 0
e caePb3.Scfld02_0        3082687 1283 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17069214 1396 - 21540570 I
e caeSp111.Scaffold576      89940 1028 -   128984 I

a score=-704.000000
s ce10.chrX               2340949 66 + 17718866 AATAAAACAAAGTTTCAGATTCAGATTTT-----TGAGTCCGAAACACAAGATATCAAAAACTTGAAACCG
s cb4.chrX               17070610 71 - 21540570 aaaaaaaCTATGTTTTAAACATCAATTTTAACTCAAAGGCCGAAACATCGGAGACCAGTCGTCTGAGAACC
i cb4.chrX               I 1396 C 0
s caeRem4.Crem_Contig233    64693 44 -   113162 ------------gtCGAAACAAACACTTC-------------AGACCTGTGTGAACAGAAGTCTGAGAA--
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3082687 1283 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e caeSp111.Scaffold576      89940 1028 -   128984 I

a score=-1572.000000
s ce10.chrX               2341015  8 + 17718866 ------AGCAAAAT-----------
s cb4.chrX               17070681 21 - 21540570 AGCCAgaactgaaa----aagtgag
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    64737 25 -   113162 AACGGAGACTGAAACGTCAACTGAA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3083970  8 -  4147112 ------AACTGAAA-----------
i caePb3.Scfld02_0       I 1283 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e caeSp111.Scaffold576      89940 1028 -   128984 I

a score=32589.000000
s ce10.chrX               2341023 91 + 17718866 AGCAGACTAATTTTCTCC-------CGTTTTTTCCAACTTCGGTTCCACTTTCTCATGAGTAT-TTTGGAGGCGTTTAATTGACTCTGAATTAGTCTGG
s cb4.chrX               17070702 98 - 21540570 accagactaattttcttttttttcgag-attttcaaacttcactttctttttctcataccATCTTTTGGGGGTGTTAAATTGAGTCTAAATTAGTCTAG
i cb4.chrX               C 0 I 68
s caeRem4.Crem_Contig233    64762 89 -   113162 AGCAGACTAATTTTCTTT-------GA-GTTTTCCaacttcac-ttctttttctcatgcCATA-TTTAGGGGCGTTTAATTGTGTCTGAATTAGTCTGG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      90968 89 -   128984 AGTAGACTGAGATCCCAT-------CG-GTTCTTCGactccat-ttcattttctcatgcCATA-TCAAGGGGCGTTTAATTGGGCTCTAAGTTGTCTGG
i caeSp111.Scaffold576   I 1028 C 0
s caePb3.Scfld02_0        3083978 86 -  4147112 GACAGACTaattttc--t-------cg-gtttttcaaCTCCGT-TTCACTTTCTCATGCCATA-TTTA-GAGCGTTTAATTGTTATCTAAGTTGTCTAG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=2663.000000
s ce10.chrX               2341114 57 + 17718866 TTTTGAAAATCGT---ATGATGTGTGCCCACCACTGTACTTTTTTCATAGCCT----TCTTTAT---
s caeRem4.Crem_Contig233    64851 67 -   113162 CACTGAAAACCCCACAAAGATGTGGGCGAACCACTGTACTATTTTTATGATCTCATTCCATTTGCAT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      91057 58 -   128984 --CAAAGCAGAATTGGATGATGTGGGCGAAAATCTGTactattttta-tgtttc---cCATTAT---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3084064 62 -  4147112 --CGGGGCGGGATTCAAAGATGTGTGGGCTCAGCCAAACTATTTTTATTGCTTCAGTCCATTAG---
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17070800 68 - 21540570 I

a score=-4526.000000
s ce10.chrX               2341171 301 + 17718866 TAGCTTCTGCAG-----------------AAAAAATGGCATTTTTGAAACGAAGTTTTAAAGAAAAAA------------------------TCTCAAGTTAACAGTT-----------TTGTTTA-TTGAGAATAATTA----GACA-GA-----------------------TAAATGAAAAC----AATGCAAAATACGAAATAATTGGTGTAGCGTTAAACATATC---GGAATGATCCGGTTAACAATTAACATCAGAAAATTCATACTCCGATTGGGAATCCAGTTAGTTCGTCCGTTGTTCGTTTCCCTGGACGGAATCCGGCTCGCCCAATCGCAATCGACTTTTTCATGATTGGAAGGGTTCGGAGTCTCCAATAGCGCA
s cb4.chrX               17070868 297 - 21540570 CGACTtctttga-aaacgtttttgcA---AGACTACAGTGTTTT------GCAGTtcttaaaacaaaaaatccctTTTCTTGTGTGTTCTCTTCTTTATTTGATAGTG-----A------TGTTGG--CGATGATGATGATTgtgacagaa-----------------------aaaatttgaatacatATAAGACAATAAAACA------------TTTAACATGGGAT-----------TCTG-----ATTGAATATC-----TTTCGAG----catttaaaaatcaaagat------cATCGTGCGCTTTCCTGGACGGAATCCGGTGCGACCGAAGGcgtttgattttttcatcagTGGGAGTCCACGGA---TCTTGTGACGGA
i cb4.chrX               I 68 I 2211
s caeRem4.Crem_Contig233    64918 297 -   113162 TGGCTCCCC----AAAAGTTATTTTG---GATTTACAGTGGTTT----------TTCTATAAATAGAG-------TTTTCTGAGTGGGTGTTTGTCAGAGTAACAGTG-----AATCGTTTATTTT--CGATGATGATGA----GAC--AA-----------------------TAGATACGACATTGTAATGAAGAATGAAA---------------TTAACACAGGATCCGGGAAAGTACCGG-----ATTTATCTTC-----ATTGAGA----AAGTTAGAAGTCGTAGATGTC---GACGGTGCGTTTTCCTGGACGGAATCCGGCGCGTCCGATGGCGATGGACTTCTTCATGATCGGAAGAGCACGAAGTCTCTCGAAGCTGA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      91115 305 -   128984 TCACACCCACGGTGCTCTTTATTTGAAGCAGGCTACTGTACTAT-------CTATTCCAAATTTAGAT----------------------------TAAACAATGG-------ATGCCTTTATTTATTAGACGATGATCA----AAGGCAA-----------------------TGGGAGAAACGTTTTGGGGGAGagtgggaaa-aagaagagtgtGTGTGAGCGCAAT--TGGAATCAAAGGG----CGATCATCGTC-----TTCCTGGGAcctcttcaaaaatcgaagagGTC---GACTGATCGCTTCCCAGGACGGAAGCCTGCGCGTCCGATGGCGATGGACCTCTTCATGATTGGAAGAGCACGGAGGTGACCGAAGCGGA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3084126 325 -  4147112 CGACACCCACAG---ACCTTTTTTGA---GAGCTACAGTATTCTT-----GCTGTTCTAAATATAGAA----------------------------AATGTGAGCGAGTTAACAGGACTTTATTTG--AGAAGATGAGTC----GGAGCAAAATGGAAATGACGAATAGAAAATTGGGTAAAACG----AAGGCGGattgaaaaa-aggggaagaTTTTTTAAATGGGA----AGAGCCAGACAG-----AATCATCGTC--AAAGTCGTGGG---CGATCAGAAGTCGGAGATGTCGATGACAGCGCGTTTTCCAGGACGGAAGCCAGCACGGCCGATTGCGATGGACTTTTTCATCATCGGAAGAACCTGAAGGTCCGTGAAGTGTA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     68775 5056 +   720316 I

a score=1622.000000
s ce10.chrX               2341472 9 + 17718866 AGCGCCCCT
s caeRem4.Crem_Contig233    65215 9 -   113162 GACGAGCCT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      91420 9 -   128984 GAAGAGCCT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3084451 9 -  4147112 GGAGGTCCT
i caePb3.Scfld02_0       C 0 I 1078
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I

a score=38.000000
s ce10.chrX               2341481 1 + 17718866 C
s caeRem4.Crem_Contig233    65224 1 -   113162 C
i caeRem4.Crem_Contig233 C 0 I 434
s caeSp111.Scaffold576      91429 1 -   128984 T
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I

a score=600.000000
s ce10.chrX               2341482 113 + 17718866 A-CGAGTGTTGCGCAGGTAGTTTGCTCGGTG--AAGGATCTGATTGAAATCGACTTGATCGACAACTCCTAATCCGCGGAAGACATCGATTCCACCCTGAAATTACGGTGCTTGTT
s caeSp111.Scaffold576      91430  99 -   128984 ATCGAGAG---------------GCTCGGCGTCGAGGACACGGTCCACGTTGACGAGGTGGAATCCTCCGAAGTCGACGACGACGTCGG-CCTACAATGAAATCA-GATGATTATT
i caeSp111.Scaffold576   C 0 I 368
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeRem4.Crem_Contig233    65225 434 -   113162 I

a score=0.000000
s ce10.chrX               2341595 556 + 17718866  
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      91529 368 -   128984 I
e caeRem4.Crem_Contig233    65225 434 -   113162 I

a score=285.000000
s ce10.chrX               2342151 9 + 17718866 GTTACATCT
s caeRem4.Crem_Contig233    65659 9 -   113162 GTTAGAGTT
i caeRem4.Crem_Contig233 I 434 C 0
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      91529 368 -   128984 I

a score=8741.000000
s ce10.chrX               2342160 109 + 17718866 AAGGCGGAGCAAAACGGTTAAACGACCGGAACCGGTGAATGTTTTTTTTGGAAAACGTTGCTCTCGGTTTTGTGAACTCATAAAGTAACATGCGAAAAATTGCACAAAA
s caeRem4.Crem_Contig233    65668 105 -   113162 AAGGCGGAGTCAAACGGTCACAACACCGGAACCGGTTATGGGTTTTAC--GAAACCTTTGATTAAATTTTGGTTTAATC-TGGAGCAACACGCGAGAAACACATTAAA-
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      91897 105 -   128984 AGGGCGGAGCCAAACGGTCACAGAGCTGGAACCAGTTATGAGTTTTCC--GAAA-Tgctaattattttttgaaaaaacc-tgGAGCAACACGCGATAAGTGATGTAAAA
i caeSp111.Scaffold576   I 368 I 305
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I

a score=291.000000
s ce10.chrX               2342269 62 + 17718866 ACTACTGCTTTACACCCACAATGATTTGTTCTCTGGAAACGTGGGTTTCAAATTAGAATGAT
s caeRem4.Crem_Contig233    65773 51 -   113162 AAGGTCGTTTGAGACGc---------ctttttctgagaaaatggg--ACATGTTATAATGAT
i caeRem4.Crem_Contig233 C 0 I 437
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      92002 305 -   128984 I

a score=0.000000
s ce10.chrX               2342331 150 + 17718866 AAAAGTTCCTTATTCTAGTGATCAGTGATGATTACTCATGTCTTTGCTATCATTTCATACAGATACTTTATTTGATTCACAAGTAAAAATTAATGTTTGTAGAAATTCCAAAAATTATTTACTCCGAGAAATCATTGCGGTAAAGAGGAT
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      92002 305 -   128984 I
e caeRem4.Crem_Contig233    65824 437 -   113162 I

a score=703.000000
s ce10.chrX               2342481 26 + 17718866 AATAGCTCTCTGCAAATGGCAT---TGAT
s caeRem4.Crem_Contig233    66261 29 -   113162 AGTAGATCTCCTCGAATGGGACGAGCGAT
i caeRem4.Crem_Contig233 I 437 C 0
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e caeJap4.Scaffold18213     68775 5056 +   720316 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      92002 305 -   128984 I

a score=1274.000000
s ce10.chrX               2342507 13 + 17718866 CGCTTTCCGCGGT
s caeRem4.Crem_Contig233    66290 12 -   113162 TTCTTTCCGCGG-
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     73831 13 +   720316 CGTTTTCCACGAT
i caeJap4.Scaffold18213  I 5056 C 0
e caePb3.Scfld02_0        3084460 1078 -  4147112 I
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      92002 305 -   128984 I

a score=996.000000
s ce10.chrX               2342520 9 + 17718866 TCCATCCAG
s caeRem4.Crem_Contig233    66302 7 -   113162 --AGTCCGG
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3085538 9 -  4147112 ttcctccag
i caePb3.Scfld02_0       I 1078 I 6
s caeJap4.Scaffold18213     73844 7 +   720316 --AGCTCAG
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17071165 2211 - 21540570 I
e caeSp111.Scaffold576      92002 305 -   128984 I

a score=-2299.000000
s ce10.chrX               2342529 5 + 17718866 -CTGCA
s cb4.chrX               17073376 2 - 21540570 -CT---
i cb4.chrX               I 2211 I 3
s caeRem4.Crem_Contig233    66309 5 -   113162 -CTAAA
i caeRem4.Crem_Contig233 C 0 I 3
s caePb3.Scfld02_0        3085553 5 -  4147112 -TTGAA
i caePb3.Scfld02_0       I 6 I 3
s caeJap4.Scaffold18213     73851 4 +   720316 CCCA--
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      92002 305 -   128984 I

a score=53606.000000
s ce10.chrX               2342534 61 + 17718866 AATGCACGCTTCCCTGGGCGCATTCCAGCTCTGCCAATTGCCATTGATCGCTTTGCTGGCC
s cb4.chrX               17073381 61 - 21540570 AGTCCACGCTTTCCTGGTCTCATTCCAGCGCGCCCAATGGCCATGGATCTTTTGACTGGAC
i cb4.chrX               I 3 C 0
s caeRem4.Crem_Contig233    66317 61 -   113162 AATCCGCGCTTTCCTGGACGCATTCCAGCTCTGCCGATGGCCATGGAACGCTTGGCTGGGC
i caeRem4.Crem_Contig233 I 3 C 0
s caeSp111.Scaffold576      92307 61 -   128984 AAGGCACGTTTTCCAGGACGCATTCCAGCTCTTCCAATTGCCATTGAGCGTTTAGCCGGAC
i caeSp111.Scaffold576   I 305 C 0
s caePb3.Scfld02_0        3085561 61 -  4147112 AAGGCGCGCTTTCCGGGACGCATTCCAGCTCTGCCGATAGCCATTGAGCGTTTGGCCGGGC
i caePb3.Scfld02_0       I 3 C 0
s caeJap4.Scaffold18213     73855 61 +   720316 AATGCACGTTTTCCCGGACGCATACCAGCTCTTCCAATTGCCATCGATCGTTTCTCGGGTC
i caeJap4.Scaffold18213  C 0 I 1227

a score=18538.000000
s ce10.chrX               2342595 40 + 17718866 GGAATCCTTGACGACTGATATAAAGACGCTTCTCCATAGT-----
s cb4.chrX               17073442 44 - 21540570 GAAATCCTCCACGATTGATGTAGAGGCGCTTCTCCATGTCG-AGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    66378 45 -   113162 GGAATCCATCACGGTTGATGTAGAGACGCTTAGCCAGTTTGAAGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      92368 40 -   128984 GGAATCCTTGGCGATTGATGTAGATGCGCTTCTCCAAGAC-----
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3085622 40 -  4147112 GGAATCCATCACGGTTGATGTAGAGGCGTTTCTCCATGAT-----
i caePb3.Scfld02_0       C 0 I 2235
e caeJap4.Scaffold18213     73916 1227 +   720316 I

a score=-5366.000000
s ce10.chrX               2342635 18 + 17718866 TAGTGGCTCCGGTTCTTC---------------
s cb4.chrX               17073486 23 - 21540570 ----------CCTTCAATTGGCTCCGAATCGTC
i cb4.chrX               C 0 I 2595
s caeRem4.Crem_Contig233    66423 13 -   113162 ----------TGCCCGAT--GCTCC--------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      92408 16 -   128984 --GAGGTTGTCGTCCTTT---------------
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I

a score=289.000000
s ce10.chrX               2342653 26 + 17718866 ATCGGCAT---AGAT-----CTCATCTTCGTCGT
s caeRem4.Crem_Contig233    66436 29 -   113162 TTCGAGTTCACGGCT-----CTCATCCTCCTCGT
i caeRem4.Crem_Contig233 C 0 I 2690
s caeSp111.Scaffold576      92424 34 -   128984 TCCGGCATCTCAAATGAATCTTCAGCTGCATCAC
i caeSp111.Scaffold576   C 0 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I
e cb4.chrX               17073509 2595 - 21540570 I

a score=384.000000
s ce10.chrX               2342679 385 + 17718866 TTGGGATAACAATCATAGGGGTCGCCAAGTCGACAGCATCATCTTGGTCTAGGTCATTAGAATCTAAAAGTTGGGATTCGTAGGAATCATCTTTAGACGTTGGATGTTCCT----GAAATGTTCATTTGCTACA----------ATTACATAAAATGATAAAATAAGT-------AGCTCAGTTCATATGAGCTCACCGAGTAAAAACCCAGCTCCAAAGC------ATGAGCTGAGACTCCAAGAAGTGCCATCCAAA---------------------------------TGACGAGGTGAGCTGCCATTGACTTTGAA--AGTGATATCAGGTGGGACTGAGGACATCCTTCTGCTCGTCTTTCTTTTTATAGCACCTATTAAGAAAACGTGGTCTTGTAGTCCGG---AAAACTGACACTACGATATTTTGGAGGATCGGATTTTT
s caeSp111.Scaffold576      92458 411 -   128984 CGGAGGCATTCATT-------TCTCCGA---------------TTGGT-----------GAACCTTCGACGTCAGATTCGTCGGAGT--TCTTCTGGCCAAGGAAGATTCTATTGAAGATGTTTCCTGGCTCCATGAAGAcctttttctggaaattgatgaattaCACTCTGTTGACCTCAATTCAGTATTTCTTACCGGGAGAGAATTATAATTTGCATTGACTTGATAGGCGGCGAGTCCAAGCAAAGCCATCAGAAGCAAGCATTTGTCAGTAATCATCTTGTTTTCCTTGGTCAGCAGAGGCACTGGTTGCTACGAAGTGGCGGTGG-AGGTGTGGGTGATGACACTCTG-TGTTCCAGGCACCTTTTATACCGACTACTATG--GGCGGGGTTTTCTAGTCCGGGATGATACTACTACTATAAAATTTTAGAGGATGAGATTTTT
i caeSp111.Scaffold576   C 0 I 1040
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I
e cb4.chrX               17073509 2595 - 21540570 I
e caeRem4.Crem_Contig233    66465 2690 -   113162 I

a score=0.000000
s ce10.chrX               2343064 822 + 17718866  
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I
e cb4.chrX               17073509 2595 - 21540570 I
e caeSp111.Scaffold576      92869 1040 -   128984 I
e caeRem4.Crem_Contig233    66465 2690 -   113162 I

a score=523.000000
s ce10.chrX               2343886 35 + 17718866 ACTTCTTTCCGAACCAT--TACTCTCTGAA-----ACTGGGC
s cb4.chrX               17076104 42 - 21540570 ATTACCCTCCAAACCATAATGTTCTTTTAACATCTACCCGGT
i cb4.chrX               I 2595 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I
e caeSp111.Scaffold576      92869 1040 -   128984 I
e caeRem4.Crem_Contig233    66465 2690 -   113162 I

a score=422.000000
s ce10.chrX               2343921 3 + 17718866 ---TCT
s cb4.chrX               17076146 6 - 21540570 TCACCT
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      93909 3 -   128984 ---tct
i caeSp111.Scaffold576   I 1040 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e caeJap4.Scaffold18213     73916 1227 +   720316 I
e caeRem4.Crem_Contig233    66465 2690 -   113162 I

a score=575.000000
s ce10.chrX               2343924 3 + 17718866 AAA
s caeSp111.Scaffold576      93912 3 -   128984 gaa
i caeSp111.Scaffold576   C 0 C 0
s caeJap4.Scaffold18213     75143 3 +   720316 aaa
i caeJap4.Scaffold18213  I 1227 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I
e cb4.chrX               17076152 0 - 21540570 C
e caeRem4.Crem_Contig233    66465 2690 -   113162 I

a score=-3054.000000
s ce10.chrX               2343927 108 + 17718866 AAACTC--TAAAAAACAGAACACGATTTCATTCC-GGTAATCTGGCTG--TGTTTGTACAT-AAAGTATCAGTG-----------------------------ATGATGACGGTGA---------------------ATATTACAAAGA-------------------GATCGATTCAAATTA
s cb4.chrX               17076152 183 - 21540570 AAACCTAGTAATTAACAGGGAACGACTTTATTTCGGGAAATCTGGCAGATCGCTTGTACATGAAGATGTTATTGGTTTTCAGAGAAGGATGGATGGAAAGAAAATGACGAGAGAGGCGAGATGGAGGGAGGGTGATTAAATTACAAAATATTGATAACTTAAATTACAAAGCGATTTGGGGGA
i cb4.chrX               C 0 I 6
s caeRem4.Crem_Contig233    69155 122 -   113162 aaatct--tgAGCAACAGGGCACGACTTTATTTC-CGAAATCAGGCAGATCTCTTGTACAT----ATGTAGTTTAGCTT--------------TGATGTggagatgagaagagaaa---------------------aaaatacaaagc-------------------aATCAATTAGGGTGG
i caeRem4.Crem_Contig233 I 2690 I 6
s caeSp111.Scaffold576      93915 120 -   128984 -aacct-gAAACTAACAGGGCACGGCTTTATTTCGGAAAATGAGACGAACGTTATGTTCAT--AAATATGGTTGAC-----------------TTGTAAGAGAATG--GACAGTAG---------------------AAGATACAAAGC-------------------AATCAATTAGATTTG
i caeSp111.Scaffold576   C 0 I 9
s caeJap4.Scaffold18213     75146 117 +   720316 agattC-ATGAGAAACAGTGAAAGA-TTTATATA-AATATTACGGTGGTACTCTTGCTCAT----ATAGTATAAAG-----------------TGTACAGCCAATGACAATGAT-----------------------ACAgtacaaaga------------------aaaatgatgtGATGA-
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3085662 2235 -  4147112 I

a score=305127.000000
s ce10.chrX               2344035 509 + 17718866  
s cb4.chrX               17076341 670 - 21540570  
i cb4.chrX               I 6 C 0
s caeRem4.Crem_Contig233    69283 539 -   113162  
i caeRem4.Crem_Contig233 I 6 C 0
s caeSp111.Scaffold576      94044 581 -   128984  
i caeSp111.Scaffold576   I 9 C 0
s caePb3.Scfld02_0        3087897 541 -  4147112  
i caePb3.Scfld02_0       I 2235 C 0
s caeJap4.Scaffold18213     75263 494 +   720316  
i caeJap4.Scaffold18213  C 0 I 37

a score=-14500.000000
s ce10.chrX               2344544 26 + 17718866 ----------------------------AAGTAGAAACCAG-----------------------TACAGATGCTACT
s cb4.chrX               17077011 76 - 21540570 CCTATCCTACTATTACCTAGATCTATCATAATATGACCTTGGCTTATCCTACTGTAGCCTGTAATCGaagttcaac-
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    69822 12 -   113162 -----------------------------AATGTGAGATTA------------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      94625 45 -   128984 ---------TCATTAATTACTTATTGCTCAATGTAAGACTA-----------------------TCATACCACTACT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3088438 23 -  4147112 -------------------------------tctaaGCCTA-----------------------ttaagaaaaaagt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     75757 37 +   720316 I

a score=59767.000000
s ce10.chrX               2344570 451 + 17718866  
s cb4.chrX               17077087 401 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    69834 385 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      94670 417 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3088461 399 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     75794 405 +   720316  
i caeJap4.Scaffold18213  I 37 I 115

a score=-23383.000000
s ce10.chrX               2345021 111 + 17718866 AATAGTGCTCA-T----------AGTGCGGA---------------ACCGATTTG-----A--TTCAAGGTAAC--AGCTATGAAACTG----------------CAGAGCAAACAGAAATTAG------AAGCATAGTACA-AATCTGTACAGTATTGGAAGTCTGCT
s cb4.chrX               17077488  88 - 21540570 -ACAGAATTCGTT----------GAGGTGGA-----------------------------A--CGATAAGTAATGGAAATTCGAGAACA----------------TGGGAA---------------------GTATAGTCAG-Taattacta-tttttgaaaactgacc
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    70219 109 -   113162 AAAAGAATATG-T----------AAAGTGGA-----------------------------A--CGgaattgaactgaaatttgaaaaag----------------tgcgGATGGGAGAAAACAGTTCAGTATGCATATCTTG-TACACAATC-TTTTCTGAGACTCACT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95087 100 -   128984 aaaagaatcaC-T----------GAAATGGA---------------ACCCCTATGGTACGA--Ccaaacaaaatgaag----aaaactg----------------tGAAAA-------------------GTGCACATTTCA-CATCTTGAC-TTCTCCCAACTGTACT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3088860 144 -  4147112 aaaagagtTTC-TCATTTGGAACGAAACGAAATTAGGAGGAAGAGTACATGTATGGGGAGAGTGTGAACATTatacagttttgaaactgaaactagTTATTCTGCTGTGCA-------------------AGACAAATTCTAGCAGCTCAAC-TTTCTctagtt----t
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     76199 115 +   720316 I

a score=-34696.000000
s ce10.chrX               2345132 103 + 17718866 ATTC-------------GAAATG----TTGCCCAGAAAACTATATA--------------CGGTTTGTATACTTTATGTCTTAAATACGT--ATTAAGTTTTTATTAAGAAGCACTGAC------AAAATTG--------------GTGTTTTGAC
s cb4.chrX               17077576 121 - 21540570 AAAT-------------AAAATAACTGGTtccaaaaacagtttttaaaaatacgg-----tgattcctaaaaatattttc---aataaat--ttcaaatt----ccaaaatattccgAGATGTACAAGGTGAGCTTCG--------ATGTTTTGAC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    70328  93 -   113162 --AT-------------ACTTTAGGAAATGTCGAGAAAAATTTATAAGGTTAGAGTTGGTTTATCTATAACGCTATTATC---AGTTA-------------------------------------AATGTTAGGCACC--------ATGTTTTGAC
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95187  87 -   128984 AGAAAGTGTCTTAAACCAAAACT-GTAATGTCCAAAAAACACTATG--------------TGGTTCGTCTTGTTATTCA----------------------------------------------AGAGTTGTTTACG--------AGAATTTGAC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3089004  82 -  4147112 ggaa-------------aaaata-caaatgtcCAGAAAATATTACA--------------CGGTGGGTATGAATTTATC----------------------------------------------GAGGCTGTCAACGGCCATAACATGTTTTGAT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     76314 101 +   720316 --------------------TTTCGGAATGCCGAAAAAACACTACAAGGTTTG-------AGTTTCGTAAAG-TATCGT----ATTGAactgaccaaaatatcaacaaaa---------------aaagaaaacgatg--------GCAATTTCAC
i caeJap4.Scaffold18213  I 115 I 69

a score=-1197.000000
s ce10.chrX               2345235 1 + 17718866 --A
s cb4.chrX               17077697 1 - 21540570 --A
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    70421 1 -   113162 --A
i caeRem4.Crem_Contig233 C 0 I 15
s caePb3.Scfld02_0        3089086 2 -  4147112 TA-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     76415 69 +   720316 I
e caeSp111.Scaffold576      95274 0 -   128984 C

a score=-6716.000000
s ce10.chrX               2345236 30 + 17718866 AATCGGAAGTAGTAGGTATCCAGTTATTAG----
s cb4.chrX               17077698  9 - 21540570 ----GGACCTGAC---------------------
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      95274 22 -   128984 ------ATTAGCCTGGT------TGCTTAGATAG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3089088 22 -  4147112 -----GATTCGACCGGC------CCATTAG-TAG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     76415 69 +   720316 I
e caeRem4.Crem_Contig233    70422 15 -   113162 I

a score=13246.000000
s ce10.chrX               2345266 37 + 17718866 TATAGTAGACA---ATAGTAGTGACAGCCAGTGATCTACT
s cb4.chrX               17077707 33 - 21540570 TATCGTAGACA---ATAATAGTACCAGTTGGCGA----CC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    70437 34 -   113162 TATAGTAGACA---ATAATAGTACCAGTCGGCGAT---CC
i caeRem4.Crem_Contig233 I 15 C 0
s caeSp111.Scaffold576      95296 38 -   128984 TATAGTAGACGGTCGTAGTAGTACCAGTCGGCAAT--ATC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3089110 34 -  4147112 TATAGCAGACA---ATGTTAGTGCCTGTCGCTGGC---CC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     76415 69 +   720316 I

a score=20432.000000
s ce10.chrX               2345303 103 + 17718866 CATTATAAGATTAGTTCTCCTGGGATAGTCGTACAAGTTCGGCTTGGAAGACAGCCCGGTACGGAGTAG------CATAACATGTTTTTCTCATTCGATCCACTAC-CTA
s cb4.chrX               17077740  76 - 21540570 CATC-------TAGCTCCCCTGGGATAATCGTACAATCAAGGTTAC---------------CAGATAAT------CATAACATGTTTTGATAGCGCG-----CCAT-TTA
i cb4.chrX               C 0 I 2
s caeRem4.Crem_Contig233    70471  99 -   113162 CATCATTAGATTAGCTCTCTTGGGACAGTTTTACGAGCAAGGTTATCTAAGCACTCAGGTACGAATGGG------CATAACATGTTATGCTTACCAG-----CCATATTC
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      95334  89 -   128984 CATC--TAGATTAGCTCCC-TGGAGACATCATATGGGTAAGGTTATCAG------CCGGTACGTCTGAt------caaaacatgtttttctcaattg-----cCAT-TTA
i caeSp111.Scaffold576   C 0 I 58
s caePb3.Scfld02_0        3089144  90 -  4147112 CATCATTAGGTTAGCTCCCACGGGAGAATCGTACGAGTAAGGTTACC--------TAGGTACGGATGTG------CATAACATGTTTTTCCCAATAG-----CTGT-CTA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     76484  89 +   720316 CACCATAGAGATAGTTCTCCTGGGATCATCGTACAAGTTAGATATACAA------CTGGTACAGGAAGACTACCCCAAAACATGTTTTGATATCA---------------
i caeJap4.Scaffold18213  I 69 C 0

a score=-12406.000000
s ce10.chrX               2345406 32 + 17718866 GTTTTTGGTCGGCACTT------TATTTTTCGGTTAAT
s cb4.chrX               17077818 24 - 21540570 ------AATCGAGATTC-----ACATTTAA---TAAAT
i cb4.chrX               I 2 I 33
s caeRem4.Crem_Contig233    70572 11 -   113162 ------TATAGAAGTTC---------------------
i caeRem4.Crem_Contig233 I 2 I 25
s caePb3.Scfld02_0        3089234 34 -  4147112 -TTATTTGTGGGGGCCAGACAAGCATTTTC---TTAGT
i caePb3.Scfld02_0       C 0 I 17
s caeJap4.Scaffold18213     76573 25 +   720316 ---GCTTATATCAGCTT-GTTAGCATAAT---------
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576      95423 58 -   128984 I

a score=133824.000000
s ce10.chrX               2345438 194 + 17718866 --------TTTTGGGACTTATTTCCAAATTGAAAGATTT---------------TTTTCAGGCACGATTGGAATATTTTCAAGGAGAAGAGAGTGAAATGTTGAAACGTGGCCAAGATCAAGCGACAAAACTTCTGGAATGGTACAAAGAACGTCTGCTTTCGGTTCAGAAAAAAGCGAGGCTCTTGAAACAAGGGAGTGTCTCACTGGTAAGCG---TT-
s cb4.chrX               17077875 183 - 21540570 --------caataatttttctt--------------ttt---------------ttttcaggctcGTCTAGAATATTTCCAAGGCGAGGAAAGTGAAATGCTGAAACGTGGTCAGGATCAAGCGACAAAACTACTGGAGTGGTATAAGGAGCGACTATTGTCGGTACAGAAGAAAGCGCGACTTCTTCAACAAGGGAGTGTCTCATTGGTTAGTACAAGT-
i cb4.chrX               I 33 C 0
s caeRem4.Crem_Contig233    70608 182 -   113162 --------CTatgattctcatt--------------tttccga-----------ttttcaggcTCGATTGGAATACTTCCAAGGAGAGGAGAGTGACATGTTGAAACGTGGACAAGATCAAGCATCAAAACTTCTTGAGTGGTATAAAGAACGACTTCTGTCAGTTCAAAAGAAAGCGCGATTATTACAACAAGGGAGTGTCTCATTGGTAAGTA------
i caeRem4.Crem_Contig233 I 25 C 0
s caeSp111.Scaffold576      95481 175 -   128984 --------TACTAAA----CTG--------------GTA---------------CTTTCAGGCTCGACTAGAATACTTTCAAGGAGAAGAGAGTGAAATGTTGAAACGCGGTCAAGATCAAGCATCAAAACTATTGGAATGGTACAAGGAGAGACTTCTTTCAGTACAGAAGAAAGCCCGTCTGCTGCAACAAGGCAGTGTGTCCCTGGTAAGTA----T-
i caeSp111.Scaffold576   I 58 C 0
s caePb3.Scfld02_0        3089285 179 -  4147112 --------taataaaatatata--------------ttg---------------TTTTCAGGCACGATTGGAATACTTTCAAGGCGAGGAAAGCGAAATGCTGAAACGTGGACAAGACCAAGCatcgaaacttctagaatggtATAAAGAGCGTCTCGTTTCAGTACAAAAGAAAGCGAGGCTATTGCAACAGGGGAGTGTCTCACTGGTAAGTA----T-
i caePb3.Scfld02_0       I 17 C 0
s caeJap4.Scaffold18213     76598 203 +   720316 Cattgtttttgtaaaaaaaaaa--------------ttggcagtACAATACGATTTTTCAGGCTCGACTCGAGTATTTCCAAGGCGAAGAAAGTGACATTTTGAAGAGAGGACAAGATCAAGCATCCAAACTTTTGGAATGGTACAAGGAAAGGCTGCTTTCAGTCCAGAAGAAAGCTAGGCTTCTGCAACAAGGCAGCGTTTCACTGGTAAGAA----TT
i caeJap4.Scaffold18213  C 0 I 637

a score=1786.000000
s ce10.chrX               2345632 11 + 17718866 AAAAAAGTACA
s cb4.chrX               17078058 11 - 21540570 CATAAAGTACA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    70790  7 -   113162 CATAAAG----
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95656 11 -   128984 TCCAAAGAACA
i caeSp111.Scaffold576   C 0 I 2
s caePb3.Scfld02_0        3089464 11 -  4147112 AGAAAAGTACA
i caePb3.Scfld02_0       C 0 I 1184
e caeJap4.Scaffold18213     76801 637 +   720316 I

a score=-348.000000
s ce10.chrX               2345643 9 + 17718866 GGTCTGGAA
s cb4.chrX               17078069 9 - 21540570 AGTTAGAAA
i cb4.chrX               C 0 I 1290
s caeRem4.Crem_Contig233    70797 7 -   113162 AGTCTGG--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95669 8 -   128984 TGTCCGGA-
i caeSp111.Scaffold576   I 2 C 0
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I

a score=-9225.000000
s ce10.chrX               2345652 119 + 17718866 TAGTATTAGGAGCCGGGTCAAAATTCATTACAAAATTGTGGGAATCATGTCATTTAAGATTTTTCTTTTGACGGTACTTTCC-------ATTATCTGTC-------------------------------------ACCA------------CTTGAAGTATCCGTAGActaaaa
s caeRem4.Crem_Contig233    70804  33 -   113162 -------------------------------------ATGG----CTTGTT----------TTTGTTCGGAT--TACCAACt------------------------------------------------------aaca-----------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95677 122 -   128984 -----------------------------------------------TGTTTTCCCA----TTTGTTTGGAT--TACTGACCggccaaaattttttgtttggcTCTCGTTCTAAATATGATGAGTGCGACACGCGAAACAAAGTACTGTGTCCTAGAAGTCTCCAGTGACTTAAA
i caeSp111.Scaffold576   C 0 I 135
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I

a score=423.000000
s ce10.chrX               2345771 15 + 17718866 aaa----gtttctccgagt
s caeRem4.Crem_Contig233    70837 19 -   113162 aaattttgttttttctagt
i caeRem4.Crem_Contig233 C 0 I 39
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I
e caeSp111.Scaffold576      95799 135 -   128984 I

a score=0.000000
s ce10.chrX               2345786 53 + 17718866 atggatactttttatggaaaaaagttttggagagaaccgttaaatgtcctggt
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I
e caeSp111.Scaffold576      95799 135 -   128984 I
e caeRem4.Crem_Contig233    70856 39 -   113162 I

a score=-1277.000000
s ce10.chrX               2345839 67 + 17718866 tcttaaaatattttccctgtgtcaaaaaattcatactcagcaaaaaaaaattcaattttgaccagga
s caeRem4.Crem_Contig233    70895 13 -   113162 CCTTAAAATCTCT------------------------------------------------------
i caeRem4.Crem_Contig233 I 39 C 0
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I
e caeSp111.Scaffold576      95799 135 -   128984 I

a score=-26283.000000
s ce10.chrX               2345906 681 + 17718866  
s caeRem4.Crem_Contig233    70908 608 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      95934 485 -   128984  
i caeSp111.Scaffold576   I 135 I 53
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I

a score=181.000000
s ce10.chrX               2346587 43 + 17718866 catttgaAAAGATACTTATAAAAAAAATACTATAAAAAAGAAT
s caeRem4.Crem_Contig233    71516 39 -   113162 CAAACTGACCAATATTCATAACGAAATTGTTATTACAAA----
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I
e caeSp111.Scaffold576      96419 53 -   128984 I

a score=-3744.000000
s ce10.chrX               2346630 63 + 17718866 TTAGAAAGTGGAATAGGTCCATCAAACTACTACTCTGTCAAAACTGGTTTATAAGGACTTGGA
s caeRem4.Crem_Contig233    71555 10 -   113162 ----------------------------------------------GTCCAAATGA-------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      96472 52 -   128984 TCAGAAAGT--AACCGCTTTCTTGAATAACAAGGTGATTATAA--AGTCCAAAAGA-------
i caeSp111.Scaffold576   I 53 C 0
e caePb3.Scfld02_0        3089475 1184 -  4147112 I
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I

a score=2128.000000
s ce10.chrX               2346693 15 + 17718866 AGCTACAAATATTTG
s caeRem4.Crem_Contig233    71565 12 -   113162 AACTACATATGG---
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576      96524 12 -   128984 AACTACAATTGG---
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3090659 12 -  4147112 AACTACATATGA---
i caePb3.Scfld02_0       I 1184 C 0
e caeJap4.Scaffold18213     76801 637 +   720316 I
e cb4.chrX               17078078 1290 - 21540570 I

a score=12859.000000
s ce10.chrX               2346708 93 + 17718866 -TTTT--TGTTCAAAATCACGTTGTCATCTTTGAACAATATAGTACGTGTCATGAGTAGGAGTAC-TTAAGGG--CTCA--TAGATACAATCAAGTACTAC
s cb4.chrX               17079368 64 - 21540570 -TTTT--TGTCAAATGTCACGTTATCATCAATAATCAG-----------------------------TGGGAGTACTCGATTGAATCTACATTTTC-----
i cb4.chrX               I 1290 C 0
s caeRem4.Crem_Contig233    71579 85 -   113162 -TTTC--TTCCGATTATCACGTTATCATCATTGACCAGTATCATGAG------AAGTGGGAGTAA-ATAAGAGTACTCA--Tgcatacaatttttca----
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576      96536 93 -   128984 TTTTCAATTCCGGAAATCACGTTATCATCTACGACCAGTATCCCAAG------AAGTGGGAGTAAGCTTCGAGTACTCA--TAGGTACAATGTCCAACTAC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3090671 91 -  4147112 TTTTT-ATTCCGAAAATCACGTTTTCATTATTGGTCAGTATCAAAAG------AAGTGGGAGTAA-CTTAGAGTACTCA--TAAGTACAATGTCCGGGTAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     76801 637 +   720316 I

a score=126233.000000
s ce10.chrX               2346801 301 + 17718866 AAAATC-GTAAAATGGTCAGAATAACAAGTACGTGT--GCATTTTTTCAGGATCCCGCTGTACATGAGCAGAAGCTCAACTTTCTCCGAGCCCACATCACAGAGCTCAACCGTCGTATTTTGGCAGTGATGGAGACTAGTGATAAAGGATTCCCGACGCACCATAACAGAACGGTA------GG---------------------GAT-------TACAAT-TCTCCATCCGACGCCAGCGCAGT--TCTGACT-----------ACAAAACAT-ACCGAAATTGAACAAAAAAAAACGTTTTATATCATGCGCTTTATACAA-------TTTT-TGCCCTATACAGCTACG-T-TATTTGTA
s cb4.chrX               17079432 311 - 21540570 -------------TAACC-GATAAACAAGTACACTC-------ATTCCAGGATCCGGCTGTCCATGAGCAGAAGCTTAACTTCCTTCGTGCCCACATCACAGAGCTCAATCGACGTATACTCGCAGTGATGGAGACCAGTGATAAGGGATTCCCGGCTCACCACAATCGAACTGTATGTTTTAGCTTTCATATT-----CTTCGTGAT-------CTCGGT-GCGTCA------GCTACCGTAGTCCTCTGACTCGCTG---------GATTAA-ATTTCGCTCAGATGGGGCCAAATGTAGTTTATCATGCGCGTTTCAccaatattattttt-ctcgCTGTACAactacact-tttttgta
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    71664 328 -   113162 -------atgagattGTC-AAAAAACAAGTACACCCTTGAAATCTTTCAGGATCCTGCTGTCCATGAACAGAAACTTAACTTCCTCCGTGCCCATATCACAGAACTGAACAGACGCATACTTGCTGTAATGGAAACAAGTGATAAAGGATTCCCAGCTCATCACAACAGAACCGTA------AGTTTGCATTCT-----CTTCTTGATGTTACGCTTCCGT-GCGTCACAGATCCCAACCCTAGTTTTCTGACTGATTTCCATATGCCAAGTAC-ATTCCGTTT--CTTGAGAGAAGAGT--TTTATCATGCGCTTCATACAA-------TTTT-ATCGCTATATAACTACA-T-TTATTGTA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      96629 327 -   128984 AAACTGAGAGAACTGGTCGGCTAAACATgtactttt----gattttccaggATCCGGCTGTTCACGAACAGAAGCTCAACTTCCTCCGTGCCCACATCACAGAACTCAATCGCCGAATCCTTGCTGTAATGGAAACTAGTGATAAAGGATTCCCAGCTCATCACAATCGAACCGTA------CGTTTTCGTTCT-----CTTCGTGAT-------CTCTACAACGTCATTCTGCTTTCGTGTAGTTTTCTGACTGATTGACATATACGAAATACAATtagtttc-----aagaaaaacgtATTCAATCATGCGCTTCGtacaa-------tttt-ttgactatATTGCCACA-CGTTTGTGTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3090762 320 -  4147112 AATCTG-TCGAACTGATCAGAAAAACAAGTAAT---------TCTTTCAGGATCCCGCTGTCCATGAACAGAAGCTTAATTTTCTTCGTGCTCACATCACAGAACTCAATCGTCGCATACTTGCTGTTATGGAAACCAGTGATAAAGGATTTCCAGCTCATCACAACCGTACTGTA------AGTTTTCTGCCT----GATGTACGAT-------ATCTGT-GTGTCATTCTGACCTGCCGTAGTTTTCTGACTGATTGACATATACGAAATAC-ATTTGATTC-----GCGAAAAATGTATATTATCATGCGCTTCATACAA-------TTTTCCTTACTATACAGctata-t-tttttaaa
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     77438 302 +   720316 aaaat--cccaaataaaaataaaaataaatgtatTG-------ATTTCAGGATCCGGCAGTTCATGAGCagaaactcaattttctgagaGCCCATATCACGGAGCTGAACCGTCGAATTCTTGCTGTAATGGAAACGAGTGACAAAGGCTTTCCAGCTCATCATAACAAAACGGTA------TGATTAAACCTTACATGTTCGGAGAA-----------AT-ATGTTA------CCGTATGTATAATACTGACGCAT-----------GATTGT-GCTCTGCTA--ATGGGTGAAAAT----TGTGTAACACACTTTGTGAAA-------ATTG-TGGGATGTACAACTAcg-a-tttttgta
i caeJap4.Scaffold18213  I 637 I 262

a score=265.000000
s ce10.chrX               2347102 18 + 17718866 CATGACAAGT------GAATCTCG
s cb4.chrX               17079743 20 - 21540570 tGAGATGAGT----GGGAAGCTCG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    71992 24 -   113162 TATGTCAACTCCAATAAAATCTCG
i caeRem4.Crem_Contig233 C 0 I 394
s caeSp111.Scaffold576      96956 19 -   128984 TATGACCGGT-----GAAGTCGTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3091082 19 -  4147112 caagATCGGT-----GAGTTCTCG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     77740 262 +   720316 I

a score=2403.000000
s ce10.chrX               2347120 6 + 17718866 TGACAG
s cb4.chrX               17079763 6 - 21540570 TGACTG
i cb4.chrX               C 0 C 0
s caeSp111.Scaffold576      96975 6 -   128984 TGACAG
i caeSp111.Scaffold576   C 0 I 338
s caePb3.Scfld02_0        3091101 6 -  4147112 TGATAG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=-157.000000
s ce10.chrX               2347126 48 + 17718866 CCTTGTGCATTTTAGTTGACAGCGTAAGTTTTATGGAGTTAGGAGAAA
s cb4.chrX               17079769 39 - 21540570 ATAGCTGCGGATTAG-CAATA------GGAATCTGGAGTT--GAGGAA
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3091107 44 -  4147112 ---ACTGCACGACTA-TAATACATTCGGTGTTCTGGAGTTTGgagaaa
i caePb3.Scfld02_0       C 0 I 1060
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=-32.000000
s ce10.chrX               2347174 23 + 17718866 AGCTTGAACCATTGGCTGCATGG
s cb4.chrX               17079808 23 - 21540570 TGGCAAAGGGAAGGGATGCGTGG
i cb4.chrX               C 0 I 112
e caePb3.Scfld02_0        3091151 1060 -  4147112 I
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=0.000000
s ce10.chrX               2347197 132 + 17718866 GATGGGGACTCTGTAACATACTACAGATTAATTTCTGAACGATAATGCTTTTCCTTTTTTTTAATATGACAATCCTAGTGAATCCGCAGCGCAAAAATGACACCTGGAAATTTTTTTTTTGAATCCAGAGAT
e caePb3.Scfld02_0        3091151 1060 -  4147112 I
e caeJap4.Scaffold18213     77740 262 +   720316 I
e cb4.chrX               17079831 112 - 21540570 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=-1370.000000
s ce10.chrX               2347329 332 + 17718866 TTTCCAAAA----TTAATGTATTCATTAG--------AGAATAAGCTTTAAAAATATATTTATACA-------TTCCACACGCCCAA----------------------CAAAAATCAATTTCCTTATTTCA-----------TATGAAAGAGTAAAATTTTGATAAGTCCGTTGTGAGTCACTGACATTTAAACCAGAAAAAT-----ATTTTGCTTACGGGTTAT-CAGATACAAATAATTGTTGTCT--GATTGCTTTTCATGAAGTCAT-------------TCGGGTACATGACAAATG---TTGTGT-TTCTAGAAATTATT-----------CATCAGATGACAAAAGTGTTAATATCGGAGATCTTGTGAAGTTTTTTTTTCCAACAAATAAGTCTGAAACTGTTTTTAAAA
s cb4.chrX               17079943 390 - 21540570 tttccgataacttttaaagt-ttcagtaggtgaaaacagatctagattgagAAGTTTGcgttcacataattttttgaaaattcctaattgtTCAGctgtttgccgatttctgaaatacgTCTCTTT-TTTCACGCTCTCAGTGCAGAAATGAGCCAAAT----AGAGATTCTTtccgaa--atcggcaaatag--ctgaaaaactatcGATTTTGCATA--AATTATGTAAATGCAA-----TGTTATCTAGGTCTGTTCTCCATCATCTAATGTTTTTACAATAATCGGAAACTTAACAGTCGAGCTCCTGTcttctaaaaatggtcaaaaaaccaaaaatcaaatgaaaaac-------------aggtcttgtatattttttttatcgGTACTGTAGGTCGTAATCTTCACTTGAGA
i cb4.chrX               I 112 I 60
e caePb3.Scfld02_0        3091151 1060 -  4147112 I
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=0.000000
s ce10.chrX               2347661 88 + 17718866 AACTTTTAAAAATTTGTGTTCAGGAAGAGTACATCTGTAAGAGCTTATAGGTGGTGTTGCGCCAGCGGGAAAGTTGTTAGACGCCACT
e caePb3.Scfld02_0        3091151 1060 -  4147112 I
e caeJap4.Scaffold18213     77740 262 +   720316 I
e cb4.chrX               17080333 60 - 21540570 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=-604.000000
s ce10.chrX               2347749 196 + 17718866 TTTATGATGCAAA--ATAGTATAATGAATCTTTGGAAAATATTTTCA-ATTTTAGCCAAAAATACAAATTTCCTACAATTTCCGCAAATCGACCATTTGCCGATTTGCCGAATTTGTACCAACATTGCCACCCACCCCTGCTTTGAAACAATTTCCCC--ACTCGACTGTTTTTTTCCTTTTCCAATCAACATAC-------CGAGTA
s cb4.chrX               17080393 191 - 21540570 TTTGTAACAAAAACCatacttcttcaaaaatcaaaaaaatcttttcacatttgag--aaaaat---------ctgaaactccaggaaattttcaattttt---ttcagtgaat---tatttttattgaCTCCTAATACTGGAAGGATACTAGAAACCCGAACCGGACTTCATTTATTCTTCAATGTCAAACATTCGCTAATTCCAATA
i cb4.chrX               I 60 C 0
e caePb3.Scfld02_0        3091151 1060 -  4147112 I
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeSp111.Scaffold576      96981 338 -   128984 I
e caeRem4.Crem_Contig233    72016 394 -   113162 I

a score=726.000000
s ce10.chrX               2347945 2 + 17718866 TT
s cb4.chrX               17080584 2 - 21540570 TT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    72410 2 -   113162 TT
i caeRem4.Crem_Contig233 I 394 C 0
s caePb3.Scfld02_0        3092211 2 -  4147112 TC
i caePb3.Scfld02_0       I 1060 C 0
e caeJap4.Scaffold18213     77740 262 +   720316 I
e caeSp111.Scaffold576      96981 338 -   128984 I

a score=348796.000000
s ce10.chrX               2347947 624 + 17718866  
s cb4.chrX               17080586 554 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    72412 570 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      97319 550 -   128984  
i caeSp111.Scaffold576   I 338 C 0
s caePb3.Scfld02_0        3092213 589 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     78002 556 +   720316  
i caeJap4.Scaffold18213  I 262 I 722

a score=37550.000000
s ce10.chrX               2348571 297 + 17718866 TTT----------------TCTTGATTTCGC------ACTC---TCAAAG----AAAAAAACCCCTTCAACTTCTAATTGCAATTATAGcccccc--ccccccccccccccccACACTGATATGAATTC-AACTCGGAGCTTGTTCATAAT-GAAATCTATGTTACCGCACGTTTTTCTTTTCTTTT--TTC----------------------AATTTTCAAACATCTGTTTTTATCTTCAACAATAC------AAAGTTCACGCATTGAATTAGAAGAATCATTTCTTC--------TGTTTTATAGTGAAATGTAGGAGAGAAGTATTTGAACGTTTTCCAAACGGCTTTACAACTACATTAAAT
s cb4.chrX               17081140 279 - 21540570 TTTCTGACTttat-caatttctcaatttcacacAAAAACCCGCGTCTccgaga-gaaaaaatat--------aataatacCATTTTTCTTTATTG--CCCTATTGCACCAATTTTGCTATTCTGAATCCTTATCCGGAGCTTGTTCATAAT-GAAGCATCTAT----GTGtagttattttt--------ttc----------------------ctttttt-----cttgatgTTA----AAATCAT--------------------TAAAACCAAA-----CATCTGCTGCAACTTCGTTTTGTATGGTGAGA------ATTGGA--TTTTGAACGTTGTCCAAATGGCTTTACAACTACAttaaat
i cb4.chrX               C 0 I 297
s caeRem4.Crem_Contig233    72982 290 -   113162 TTT-TAACGTCAtccaatttctcaatttttc------acccTTGTCTCCGAGATGAAAAAATCCCTTCCCCAACTAATTACAATTATAATCCTCA--CTCT-TCCCAACTGATTTGTTA-TATGAATTC-AATCCGGAGCTTGTTCATAAT-GAAGTATATAT----gtgttctcaacttttttcctaattc----------------------tttcttt-----ttcgttcCCG----CAATCATGTGCTTT-TTAGTTCACGCAGAGAAttgta-----catt-------------ttttgtat-gtgaaa------a--gaa--attagaacGTTTTTCAAACGGCTTTACAACTACATCAAGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      97869 254 -   128984 AAC-CAA-------TAACTTCTCGATTTCAC------ACCC--gtctccg----aaaaaaattattttt---ctcaattgcaATTataatcttca--tttt-ccccaAATGATTTG-------GAATTT-AACTCGGAGCTTGTTCATAATGAAAATATGTGTTACCTCATTATTgcattt--------tta----------------------agttttccAACATCTGTTTCTG----CAA------------GCAGTTTTCCAGGAGATTCACA----------------------TTTCGTACG----AA------AACGAA--ATTTGAACGTTTTCCAAATGGCTTTACAACTACATTAAAT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3092802 294 -  4147112 TTT-Caacttctctcaatttttcaatttcac------accC--GTCTCCG----AAGAAAATCCCTT---------ATTGCAATTATAATCCTAATCTTTT-CCCCGCACGATAT--------GAATTC-AATCCGGAGCTTGTTCATAAT-AAAATGTGTGTTACCTCATGGttaatttt--------ttatatctctttttctattcattttcatcttcaaacaTCTGTTCTTG----CAACGATGAGAAATGAGAGTTCACGCTGagaatcaaa-----tg---------------ttttgtatgttgaaa------aaagaa--atttgaacg-CTTCCAAATGGCATTACAACTACATTAAAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     78558 722 +   720316 I

a score=11105.000000
s ce10.chrX               2348868 61 + 17718866 ACGTCGTTGTATTCGATCAGAAACGAGGATTAACCAG-AAAATTAGTTTC--TGCAGGAGGGCC
s caeRem4.Crem_Contig233    73272 60 -   113162 ACA-TGTTGTAGTTGATCGAAAACGAGGATTGAGAGT-GAAAATTGTCTT--TGCAGGCAGGCC
i caeRem4.Crem_Contig233 C 0 I 142
s caeSp111.Scaffold576      98123 62 -   128984 ACA-CGTTGTATCTGATCAGAAACATGGATTAAGCCG-GAGAAATGTTCTTGCACACGCAGGCT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3093096 60 -  4147112 ACG-CGTTGTAGTTGATCAGAAGCAACGATTAGGAAGAGAAAATTGTTCT--CGGTAGCAGGC-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I

a score=1654.000000
s ce10.chrX               2348929 66 + 17718866 CACATGTAATACAACTTTTTGAGGGATGGGGATTTTAAAAAAATTGG-------AAATTATGATCTATTAGTA
s caeSp111.Scaffold576      98185 60 -   128984 T-CGGATAATAAAATCTTTTGTGg-----ggaattgagaaaaacgcG-------AAAAATTGCTTGATTATTA
i caeSp111.Scaffold576   C 0 I 58
s caePb3.Scfld02_0        3093156 69 -  4147112 --CCGctaataaaactttttgtggg--gaggaatcaaaaaacatgaaccTCAATGAAAACGAGGAGTTTATTA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I
e caeRem4.Crem_Contig233    73332 142 -   113162 I

a score=530.000000
s ce10.chrX               2348995 16 + 17718866 ACGGGGCATATATTTT
s caePb3.Scfld02_0        3093225 16 -  4147112 ACGTGGGTTGGATTTT
i caePb3.Scfld02_0       C 0 I 383
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I
e caeSp111.Scaffold576      98245 58 -   128984 I
e caeRem4.Crem_Contig233    73332 142 -   113162 I

a score=0.000000
s ce10.chrX               2349011 1178 + 17718866  
e caePb3.Scfld02_0        3093241  383 -  4147112 I
e caeJap4.Scaffold18213     78558  722 +   720316 I
e cb4.chrX               17081419  297 - 21540570 I
e caeSp111.Scaffold576      98245   58 -   128984 I
e caeRem4.Crem_Contig233    73332  142 -   113162 I

a score=465.000000
s ce10.chrX               2350189 17 + 17718866 TATAATATAATCCATAG
s caeRem4.Crem_Contig233    73474 17 -   113162 TATTATAAAAGTCAAAA
i caeRem4.Crem_Contig233 I 142 C 0
e caePb3.Scfld02_0        3093241 383 -  4147112 I
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I
e caeSp111.Scaffold576      98245 58 -   128984 I

a score=300.000000
s ce10.chrX               2350206 1 + 17718866 G
s caeRem4.Crem_Contig233    73491 1 -   113162 G
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3093624 1 -  4147112 g
i caePb3.Scfld02_0       I 383 C 0
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I
e caeSp111.Scaffold576      98245 58 -   128984 I

a score=60.000000
s ce10.chrX               2350207 1 + 17718866 ------G
s caeRem4.Crem_Contig233    73492 7 -   113162 GAGTAAG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      98303 1 -   128984 ------g
i caeSp111.Scaffold576   I 58 C 0
s caePb3.Scfld02_0        3093625 1 -  4147112 ------g
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     78558 722 +   720316 I
e cb4.chrX               17081419 297 - 21540570 I

a score=27191.000000
s ce10.chrX               2350208 153 + 17718866 AAATAAAAACAAAAAG-------------TACTAGATTTCATTTGAAAAACAGACCAGAACATTTATTTATCCT------ACTTCTTATGATAGCAATTCAATGAGTTGTT---TTCATCA-TTTTTTTATTTGATGCAGGTATAGAGCAAATCGAGAGGACCGAATACTTGGGGT--------------------------
s caeRem4.Crem_Contig233    73499 125 -   113162 AAATCAAAACAATGAG-------------ATCCA----ATGTTTGGAAAACAGATCACacaatttattttctct------cGTTCTTATGACACTAGTTGAATAGCTTGTT---TT--TCA-TTCGAGAAATCTATACTAAGAGAA-------------G---------CTACGGT--------------------------
i caeRem4.Crem_Contig233 C 0 I 4
s caeSp111.Scaffold576      98304 138 -   128984 aaatcaaaacaataGGGTAGAGATTgcattttca----ttgtttgaaaaacagatcacaaaatttattttgact------CGTTCTTAGGACACCAATTCAAtgacttgtt---tt--tca----------tttatacGGAGGGAAAGAA----GCGGGG---------CTACGGT--------------------------
i caeSp111.Scaffold576   C 0 I 4
s caePb3.Scfld02_0        3093626 122 -  4147112 aaatcaaaacaatggg-----------------a----ttgtttgaaaaacagatcacaaaatttattttgtct------CGTTCTTATGACACCAATTCAATGActtgtt---tt--tccatttgat---tTTATACGGAGGAAG----------GAGG---------CTACGGT--------------------------
i caePb3.Scfld02_0       C 0 I 4
s caeJap4.Scaffold18213     79280 177 +   720316 Aagtaaaaacaaagaa------aagtcaAATCCA----ATGTTTGAGGAACAAATCacacaatttatttttcttttgcgCTGTTCTTATGGCACCCATTCAATGACTAGTtgcctt--tta-tttttt---ctttttcaactcaAGCCGACTCCATTCGC---------CTACGGTAAAAGTGGGGGTgaaagagtagaaac
i caeJap4.Scaffold18213  I 722 C 0
e cb4.chrX               17081419 297 - 21540570 I

a score=208524.000000
s ce10.chrX               2350361 644 + 17718866  
s cb4.chrX               17081716 699 - 21540570  
i cb4.chrX               I 297 I 27
s caeRem4.Crem_Contig233    73628 692 -   113162  
i caeRem4.Crem_Contig233 I 4 C 0
s caeSp111.Scaffold576      98446 697 -   128984  
i caeSp111.Scaffold576   I 4 C 0
s caePb3.Scfld02_0        3093752 693 -  4147112  
i caePb3.Scfld02_0       I 4 C 0
s caeJap4.Scaffold18213     79457 686 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=1127.000000
s ce10.chrX               2351005 35 + 17718866 TTCGCATCGCATCAAAATTTACAACAGGATCCATA
s caeRem4.Crem_Contig233    74320 33 -   113162 CCGTTGTCGCATCAAAATTTACAAC--GATCTCAA
i caeRem4.Crem_Contig233 C 0 I 4
s caeSp111.Scaffold576      99143 24 -   128984 CCGTTGTCGCATCAAAATTTA-----------CAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3094445 27 -  4147112 ------TTGCATCAAAATTTACAAC--GATCCCAA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     80143  7 +   720316 --------GCGTGGA--------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17082415 27 - 21540570 I

a score=136795.000000
s ce10.chrX               2351040 250 + 17718866 CCCATCCGGCGCAGAGGTCATACATAGTGTGAGCGCAACCTGAGATCCTTGCTACTCATTTCC-TGCCCACCTGCACCG--------------AATTT---TTCGTTCA---------------CTATTTTGCCATCGTTTGTGTCCACATCAACTTCAAGAGATGACATACGTACGTCGTCCC------------------------GAAAA----------GTGAGGAC--CGAAATGTGATCCATCTCGTGTTACACCCTAAATTGCGTGATA----CAGGTGTCTT---GTTA-TGGTTTTAATTACAGCCTTAGATTTTTGA
s cb4.chrX               17082442 270 - 21540570 CATCTCCGGCGCAGAGGTCATACATAGTGTGAGCGCAACCTGAGAT-CTTGCTACTCATTTCCGTGCCCACCTCCatcgaaaaatttccttttctttc---tttttttctagaaacaaaaaattattttgt-ctTCCGCTTG--------TCAACTT--------GACAGACG-ACTTCGTCAG---------------------------AGACGACGACGTATGAAGCGCCAAAAATGTGATCCTTCTCAAATTACACCCTAAATTGCGTGATA----CAGGTGTCCT---GGTG-TGGTTTCAATATcaatctttaatttttga
i cb4.chrX               I 27 C 0
s caeRem4.Crem_Contig233    74357 238 -   113162 CCCATCCGGCGCAGAGGTCATACATAGTATGAGCGCAACCTGAGAT-CTTGCTACTCCTTTTT-TGCCCACCTGcatcgaaaaaatgttgccGAATTC---TGTCTTCC---------------ATTTTGT-CCAAAG-------------CAACTT--------GGATGACATACATCGTCAG---------------------------AA----------GTGAAGGG--AAAAATGCGATCCATCTCGTATTACACCCTAAATTGCGTGATA----GAGGTGTCCT---GTTA-TGGTTTCAATATCAATCTCTAATTTTTGA
i caeRem4.Crem_Contig233 I 4 C 0
s caeSp111.Scaffold576      99167 245 -   128984 GCCATCCGGCGCAGAGGTCATACATAGTGTGAGCGCAACCTGAGAT-CCTGCTACTCATTTCT-TGGCCACCtgcatcagaaaa---------aattccaatatGTTTT---------------GTCTT----CTCCGTTTG--TCCACATCAACTTCC------ATCTGACATACGTCGTCAG------------------------GAAAA----------GTGAGGAA--CAAAATGTGATCCATCTCGTATTACACCCGAAATGGCGTGATA----GAGGTGTCCC---AATC-TGGTTTCAATATCaatctctaattttttg
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3094472 253 -  4147112 CCCATCCGGCGCAGAGGTCATACATAGTGTGAGCGCAACCTGAGAT-CTTGCTACTCATTTCC-TGCCCACCtgcatcaaaaaa-------tgaattccaatATGTTTT---------------CTATTGT-CTTCCATTTG--------TCAACTTCA------GAATGACATACGTAGTCAGT----------------------CAATAA----------GTGAGGAG--CAAAATGTGATCCCTCTCAAATTACACCCTAAATGGCGTGATATATCGAGGTGTCCCCCAGTTA-TGGTTTCAATATCAATCTCTAATTTTTAG
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     80150 246 +   720316 GCCATCCGGCGCAGAGGTCAAACATAGTATGAA-GCAACCTGAGGG-TTCGCTACTCATTTTA-CGCCCATCT-TGCAAGACAA---------ATTTtaaatgcgtttt---------------tttttgtttcttcgaTGA-----------------------GATGTGCG-ATGGTGTCAGTGGTGACATctagtcgttttgaaaaagaa----------atgaagag--caAAATGTGATCCATCTCAAATTACACCCTAAATTGCGTGACG-----------------GCTATTGGTTACAATATCAATCTCTAATTTTTGA
i caeJap4.Scaffold18213  C 0 I 145

a score=127.000000
s ce10.chrX               2351290 17 + 17718866 GACTC--TAGTTT---TATTGG
s cb4.chrX               17082712 18 - 21540570 cGTTTTATGGTT----TGTTAG
i cb4.chrX               C 0 I 1235
s caeRem4.Crem_Contig233    74595 20 -   113162 CACCT--TGGTTTTCATATTGG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576      99412 20 -   128984 gatct--ttgatttcaattcga
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3094725 20 -  4147112 GATCT--TTGATTTCATACTGA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I

a score=2625.000000
s ce10.chrX               2351307 8 + 17718866 CTCTTGAA
s caeRem4.Crem_Contig233    74615 8 -   113162 CCGTTGAA
i caeRem4.Crem_Contig233 C 0 I 110
s caeSp111.Scaffold576      99432 8 -   128984 CTAGTGAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3094745 8 -  4147112 CTATTGAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I

a score=1037.000000
s ce10.chrX               2351315 17 + 17718866 ---------TA-ACAATGTACTTTTTG
s caeSp111.Scaffold576      99440 27 -   128984 ACACCAGTTTCTGAAGTGCACTTTTTA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3094753 26 -  4147112 ACATTAAAGTC-ATAGTGCACTTGTTG
i caePb3.Scfld02_0       C 0 I 261
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=32.000000
s ce10.chrX               2351332 13 + 17718866 TCG-CCCTTTCTAT
s caeSp111.Scaffold576      99467 14 -   128984 CGGACACTTTCAAT
i caeSp111.Scaffold576   C 0 I 229
e caePb3.Scfld02_0        3094779 261 -  4147112 I
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=0.000000
s ce10.chrX               2351345 668 + 17718866  
e caePb3.Scfld02_0        3094779 261 -  4147112 I
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I
e caeSp111.Scaffold576      99481 229 -   128984 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=100.000000
s ce10.chrX               2352013 1 + 17718866 C
s caePb3.Scfld02_0        3095040 1 -  4147112 C
i caePb3.Scfld02_0       I 261 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I
e caeSp111.Scaffold576      99481 229 -   128984 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=5.000000
s ce10.chrX               2352014 6 + 17718866 TTTTGT
s caeSp111.Scaffold576      99710 3 -   128984 ---TTT
i caeSp111.Scaffold576   I 229 C 0
s caePb3.Scfld02_0        3095041 6 -  4147112 TCTCAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I
e cb4.chrX               17082730 1235 - 21540570 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=546.000000
s ce10.chrX               2352020 1 + 17718866 T
s cb4.chrX               17083965 1 - 21540570 T
i cb4.chrX               I 1235 C 0
s caeSp111.Scaffold576      99713 1 -   128984 T
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3095047 1 -  4147112 T
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I
e caeRem4.Crem_Contig233    74623 110 -   113162 I

a score=20791.000000
s ce10.chrX               2352021 65 + 17718866 TTACTCTAGACAAAACCAAAAGTACAACTACCAATCCGCCAATTGCAAATTCATTCCTACAGG---CC
s cb4.chrX               17083966 64 - 21540570 TTCCTTCAGACTAGGTCAAAAGTACAAGCAC---GTCCCTTATTGTTAATTCGTTCCTTCCTCTT-gc
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    74733 63 -   113162 TTACTCCAGACTAGGTCAAAAGTACA--CGT---CTCCCTTATTGCTAATTCGTTCCTTCCTAGTAGA
i caeRem4.Crem_Contig233 I 110 C 0
s caeSp111.Scaffold576      99714 64 -   128984 GCTCTCCAGACAGAATCGAAAGTCCAACTG----GGCCTTTATTGTTAATTCGTTCCTTCTTTCTGCC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3095048 62 -  4147112 TCTCTCCAGACTAGACCAAAAGTACAAGTA----GGCCCTTATTGCTAATTCGTTCCTTCCTTT--CC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     80396 145 +   720316 I

a score=92217.000000
s ce10.chrX               2352086 250 + 17718866 AGTTGCTGCAAATCAAGGATGTGCATACTGAATATCTTTTATCCATGCTT---------------------CAAAAATTTCCAAAAGAGTACATAGGTCAT-------GGTGACGACAA--CG--TGGCCTTTCAACTTA-------------------CTACCCAC--------CT-----------TCTGA---CACGTCATTGTCTCGCAACATT-CTGAAAGAAAGT---T----AAAAAAAAA--GGACGAAAAGTTGAGACTACT------------------TGAACATCCCATTAGCTATTCAAGCTGATCA-GGTTTTTGGTGGATATCACGTTTTAG--------CCCTA
s cb4.chrX               17084030 258 - 21540570 agtt--tgaaaatcaaggatGTGCATAAAGAAACCATTTTATCCATgctt---------------------caaaaacttccaaagaAGTGCATAGGTTATCCTGGCGGGTGGCAACAG-TTGG-TGACCTTTCAACCTAA------------------CCTCCCgc--caaaaactaaaaa------gttgAACCCACGTCATTGTTCTTCAACA---GGGCAAAAAAGT---T-----------------GCGAAAAGGTGACGCTACT------------------TGAACATCCCATTAGGTATTCAAGACGATCA------TAGAGGGATATCAcgttttccatat----tttca
i cb4.chrX               C 0 I 12
s caeRem4.Crem_Contig233    74796 255 -   113162 AACT--TGCAAATCAAGGATGTGCATAAAGAAGATCTTTTATCCatgctt---------------------caaaaaattccaaaagagCACATAGGTCAT-------GATGACGACGG--CGG-CAACCTTTCAACTCA--------------------CTCCCAC-----AAACC-AAAA------GTTGA---CACGTCATTGTTCTTCAATT---TCGGAAGAAACT---TTGTTAAAAGAAGT--ACGAGAAAAGGTGACACTACT------------------TGAACATCCCATTAGCTATTCAAGTAGATCA-GG--TTTAGTGGATATCACGTTTTCA--------CCCCA
i caeRem4.Crem_Contig233 C 0 I 12
s caeSp111.Scaffold576      99778 271 -   128984 GGCTACCGCAAATCAAGGATGCGCATAAAGAAGATATTTTATCCatgctt---------------------caaaaacttcgaaaagaGTATATAAGTCAA-------GATGACGACTT--CGG-TGACCTTTCAACTCACTTCTTT------------ACTCaaac----aaaact-aaaa------accgA---TACGTCattgtttcttattttcagcggaagaaaaa---ttttgaaaagaact--aCGAAAAAAGTGgcaactttt------------------tgaacttcttattagcaattcaaaaagatcagGG-TTTTCGTGAATGTCACGTCTTGC--------CCCCA
i caeSp111.Scaffold576   C 0 I 38
s caePb3.Scfld02_0        3095110 272 -  4147112 AGCAACTGCAAATCAAGGATGTGCATAAAGAAGATCTTTTATacatgctt---------------------caaaaatttccaaaggaGTACATAGGTCAT-------GATGACGACTA--TGGCCAACCTTTcaacttactttttt----------tcactccCAC----AAAAGT--AAA------CCTGA---CACGtcattgttttttaatttt-gaggaagaaaaaaatgtttcaaaagaagt--ACGAAAAAAGGTGACACTACT------------------TGAACATCCTATTAGTTATTCAAAAAGATCA-GG-TTTTTGAGGATATCACGTTTTCC--------CTT--
i caePb3.Scfld02_0       C 0 I 9
s caeJap4.Scaffold18213     80541 335 +   720316 AGTTTCCGCGAATCAAGAATGTGCATACGAAAGAGTTGTTACCTATACATGCACTGAGGTCACAATGACGCCATAACCTTTGAAAT-----CTCAAGTCAG-------AAAAGGGAAAACTTGG-CACctttttatttccttttctttttccttttttttctcctgtgCAACACAGT-TAAATGTATTTCCAA---TTTGGGAGTggtcttcattttt-tgttacaaaaat---ttgaaaaaaaaaacagacgcACAAAAATGTAACTAGTACGTAGTTCTAGCTCTGCTGAACATCCTATGAATTATTCAAAAAGTTCA-GATTTTTGGTG---ATCACGTTTTCCAGATTGAAACACA
i caeJap4.Scaffold18213  I 145 C 0

a score=-3680.000000
s ce10.chrX               2352336 31 + 17718866 --TATGATGTTGGGAT---CTTCTCGTCCTTTTAGA------
s cb4.chrX               17084300 28 - 21540570 --tctgaactt----tttatttcgtttcgttttt--------
i cb4.chrX               I 12 I 13
s caeRem4.Crem_Contig233    75063 25 -   113162 --tgagaactt----t---tttcactttttacta--------
i caeRem4.Crem_Contig233 I 12 I 17
s caePb3.Scfld02_0        3095391 25 -  4147112 --CGAGaactt----t---tttcccagtttttta--------
i caePb3.Scfld02_0       I 9 I 18
s caeJap4.Scaffold18213     80876 33 +   720316 TACGCCAACGT----T---TTTTCTTATGTATTT--TTCAGA
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576     100049 38 -   128984 I

a score=23770.000000
s ce10.chrX               2352367 83 + 17718866 ------CATACT-----------------TTTAA--TTTCAAAACCTCTTTCTTCTCATGTTGCAAA---TTTCTCACAA-AAGTTTTGAATTTGGATCCTTTGTTTGCatt
s cb4.chrX               17084341 74 - 21540570 ------GACATT-----------------CATGGATTTCGGA-------TTATtctcaaattgcaaaattatTCTCACAGCGAGTTTCAAA--------TATTGTTTGCACT
i cb4.chrX               I 13 I 1855
s caeRem4.Crem_Contig233    75105 68 -   113162 ------GTCATT-----------------CCTGG--CACCGG-------TCATTCTCATGTTGCAGA---TTTCtcaca--aagttttgaat-------ttttatttgccgt
i caeRem4.Crem_Contig233 I 17 C 0
s caeSp111.Scaffold576     100087 66 -   128984 ------attttt-----------------tttgg--tccAGG-------TCATTCTCATATTGCAGA---TTTCTcaca--aagttttgaat-------ttttgtttgca--
i caeSp111.Scaffold576   I 38 C 0
s caePb3.Scfld02_0        3095434 67 -  4147112 ------GTCATA-----------------TTTGG--TGCCGG-------TCAGTCTCATGTTGCAGA---TTTCTCACA--aagttttaaac------attttgtttgca--
i caePb3.Scfld02_0       I 18 C 0
s caeJap4.Scaffold18213     80909 91 +   720316 CCCCACGTCACCAGAAAGTAAGGTGGAAGCTCAA--AGTCAA-------ACGTTCTCAAGTTGCAGA---TTTCACACA--AAGTTTAGATT-------TTTTATTTGCACT
i caeJap4.Scaffold18213  C 0 C 0

a score=-1149.000000
s ce10.chrX               2352450 13 + 17718866 atttttttttttg--
s caeRem4.Crem_Contig233    75173  7 -   113162 ------cgtttta--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100153  9 -   128984 ----CTCATTTCA--
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3095501  9 -  4147112 ----ctctttttg--
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     81000 13 +   720316 --TCTTCTCTTTATG
i caeJap4.Scaffold18213  C 0 I 654
e cb4.chrX               17084415 1855 - 21540570 I

a score=-2347.000000
s ce10.chrX               2352463 34 + 17718866 atattta--ttatatttCACAAAATCTCTACTTAAG
s caeRem4.Crem_Contig233    75180  7 -   113162 aaatttc-----------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100162 36 -   128984 CAATTTCATTATTCTCTCACTAAATCCACCACTAAG
i caeSp111.Scaffold576   C 0 I 519
s caePb3.Scfld02_0        3095510 35 -  4147112 aaa-ttcattccTTTTCATCTAAATCTTTTGTTAAG
i caePb3.Scfld02_0       C 0 I 533
e caeJap4.Scaffold18213     81013 654 +   720316 I
e cb4.chrX               17084415 1855 - 21540570 I

a score=0.000000
s ce10.chrX               2352497 1 + 17718866 C
e caePb3.Scfld02_0        3095545 533 -  4147112 I
e caeJap4.Scaffold18213     81013 654 +   720316 I
e cb4.chrX               17084415 1855 - 21540570 I
e caeSp111.Scaffold576     100198 519 -   128984 I
e caeRem4.Crem_Contig233    75187 0 -   113162 C

a score=-6272.000000
s ce10.chrX               2352498 850 + 17718866  
s caeRem4.Crem_Contig233    75187 592 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
e caePb3.Scfld02_0        3095545 533 -  4147112 I
e caeJap4.Scaffold18213     81013 654 +   720316 I
e cb4.chrX               17084415 1855 - 21540570 I
e caeSp111.Scaffold576     100198 519 -   128984 I

a score=-1082.000000
s ce10.chrX               2353348 19 + 17718866 ----ACTTATACCAATCTTGCGA
s caeRem4.Crem_Contig233    75779 20 -   113162 TTTATCTGACAAGTACA-AGC--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100717 16 -   128984 ----actgacaaCGATC-TGC--
i caeSp111.Scaffold576   I 519 C 0
e caePb3.Scfld02_0        3095545 533 -  4147112 I
e caeJap4.Scaffold18213     81013 654 +   720316 I
e cb4.chrX               17084415 1855 - 21540570 I

a score=1092.000000
s ce10.chrX               2353367 2 + 17718866 AT
s caeRem4.Crem_Contig233    75799 2 -   113162 AT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100733 2 -   128984 AT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096078 2 -  4147112 AT
i caePb3.Scfld02_0       I 533 C 0
e caeJap4.Scaffold18213     81013 654 +   720316 I
e cb4.chrX               17084415 1855 - 21540570 I

a score=20626.000000
s ce10.chrX               2353369 51 + 17718866 TATTTATGAAACAATGTGACGAT-------GACCCCGATCTTAGGTTCCGGATATATT
s cb4.chrX               17086270 53 - 21540570 TATTCATGAAACAATGTGACAACTAGCCCGG---ACAATCATAGCTTCCGGCT--GGT
i cb4.chrX               I 1855 C 0
s caeRem4.Crem_Contig233    75801 44 -   113162 TATTCATGAAACAATGTGACGAT-------G---GCGATCTTGGGTTCCTGTT----T
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100735 48 -   128984 TATTTATGAAACACTGTGATGAC-------AG-CGCGATCTTAGGTTCCGGCT--CCT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096080 46 -  4147112 TATTCATGAAACAATGTGACGAT-------G---GCAATCTTAGGTTCCGGCT--ATT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81013 654 +   720316 I

a score=81825.000000
s ce10.chrX               2353420 170 + 17718866 TTTT--------TCTGTCAGAAATA-GAATTG-----TA---------------AAGAGACTCTCTCTC-------------GTACACTTTTTGACATTGTCTAGGCG-----GGGGAGA------A--ACTACTCAATTTTAATGCATTCATGAAAGAAACCA----ACACACACACACACTTACACGCA-TTC---TTTTCCCCTATCACAAACAAAACAA-TTTCAGCCTA
s cb4.chrX               17086323 184 - 21540570 TATC--------TCactcaaaaata-gaattg--------aCCG----------TCGGCCG---CTTTCT-----------TGTACAC-TTTTGACATTGTCTAGGCGTGTGTGGGGAGAAAAAGGG--ACTACTCAATTTTAATGCATTCATGAAAGAAACCA----ACACACATACAAATACACACACATTCCA--TTTCTTCCTATCACAAACAAAGCAATTTTCAgcgcc
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    75845 160 -   113162 TCTC--------GTACTCCGAAATA-GAATCGCTGG-TATATTG----------GAGGGAC---CTTTC-------------GTACAC-TTTTGACATTGTCTAGGCG-----GGGGAGA------G--ACTACTCAATTTTAATGCATTCATGAAAGAAACCA----ACACACA-----------------TTCT--TTTCCTCCTATCACAAACAAAGCAA-TTTCAGCCTa
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     100783 175 -   128984 TCTTGCTC----GTACTCCGAAATA-GAATTTCTGG-TATATCGAGTGAGTGAAAAAGGAC--TCTCTC-------------GTACAC-TTTTGACATTGTCTAGGCG-----GGGGAGA------GCCCCTACTCAATTTTAATGTATTCATGAAAGAAACCA----acacaca-----------------ttt---tttgttcctaTCACAAACAAAGCAA-TTTCAGTTT-
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096126 172 -  4147112 TCTCTTCCTTTAGTACTCCGAAATAGGAATTGCTGGATATATTG----------AAGGGA----CTCTC-------------GTACAC-TTTTGACATTGTCTAGGCG-----GACGAGA------G--ACTACTCAATTTTAATGCATTCATGAAAGAAACCAACACACACACA-----------------TTC---TTTGTTCCTATCACAAACAAAGCAA-TTTCAGCCTA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     81667 165 +   720316 TTTT--------TCcttatgaaaca-aaaaaa-----ta---------------caaattt---ctTTCTatctatgtacatacatac-tttTGACATT-TCTTGATG-----GGGAACA------T--ACTTTTCAACTGTAATGCATTCATGAAAGAAGTCA----ACGAACA-----------------CTCATCTTAGCGTCTATCACAAACAGAACAG-CTCTAGACTA
i caeJap4.Scaffold18213  I 654 I 872

a score=13587.000000
s ce10.chrX               2353590 472 + 17718866  
s cb4.chrX               17086507 428 - 21540570  
i cb4.chrX               C 0 I 362
s caeRem4.Crem_Contig233    76005 584 -   113162  
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576     100958 456 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096298 547 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I

a score=-11210.000000
s ce10.chrX               2354062 93 + 17718866 --------CTCAAATTGGAGAATAAATTATATTAAAAGTTATCAGGACTAAATAATAATTTAAAAATGCAGCCGACTTTTACAA---GGTTACATCTTGGTTCA
s caeRem4.Crem_Contig233    76590 55 -   113162 ---------aaaatgtggaaaac------------------------------gATAATTAATAagcttttccgtttttcccaGACATGCTTCA----------
i caeRem4.Crem_Contig233 I 1 I 36
s caeSp111.Scaffold576     101414 39 -   128984 TGTTTACCCTGAAATCG------------------------------------GACCCTCCAAAACCT-------------------GGctaca----------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096845 61 -  4147112 TTCTCActcaaagaatgaaaaaca---------aaaagtt-----gaagaattgATAATTAGTAATCC-------------------CATTCGA----------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I

a score=-1797.000000
s ce10.chrX               2354155 44 + 17718866 TTTTA-------------------AAGAAACTAACAAACAATTAATTACAAACAGTCAAAAAA
s caeSp111.Scaffold576     101453 63 -   128984 tttttttgttagaaagcgaaaaacatcaaaacaaaaagtggaaaacgATAATTTGTAATCGCA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096906 37 -  4147112 TTTTC--------------------------CCAGACGTGATTAGCCGGAAGGAGTCATAAAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I
e caeRem4.Crem_Contig233    76645 36 -   113162 I

a score=-12259.000000
s ce10.chrX               2354199 78 + 17718866 TAATTTTGATAAATTTTGTCTGTATGCAAATAATTTATGAATAC------------------AAACAATACAAACAACAATTGATATATAAGCTGG
s caeRem4.Crem_Contig233    76681 82 -   113162 CACTTTTGCCTAACTTT-------------TACTTCATGGTttaactcattttttattccaaagATGACATGAAAAG-gattaaaagaaaagaagg
i caeRem4.Crem_Contig233 I 36 I 48
s caeSp111.Scaffold576     101516 40 -   128984 ----------------------------------TTCTGATTTT-------------CCCA-----GACGTGATTAG----CCAAAGAAAATCATC
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096943 10 -  4147112 ----------------------------------TTAAGATTTC----------------------------------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I

a score=-2382.000000
s ce10.chrX               2354277 109 + 17718866 CAGAGTTAATTACTATTTTTTAGCTTTTGGAAGATTTTTAGAAAATTTATATTAACCGTCAGAAGGGGGCAGTTACACTGCTTTTTGATCCTTTTATTGTAGG---GTACTA
s caeSp111.Scaffold576     101556  75 -   128984 --GAATTGAGTCATATTCTCTCGT---------ATTTTT----------CCTTGACTGCC----------------AATATTCATTTCCTCATTTTGGGCAAAGATGAGTTG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3096953  70 -  4147112 ---------GTCACATTTTCAC-----------ATTTGT----------GCTTAACTTCC------------TTTTACGAcgcatttccttttttattccaaaGATGAATTG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I
e caeRem4.Crem_Contig233    76763  48 -   113162 I

a score=-24159.000000
s ce10.chrX               2354386 192 + 17718866 ---AACATGCGGTGTAGGCTTAAATTT-------GCCAGCCAATTTACCACAACGTTGACTGAAAATAAATCAATAACAACTGTTGAAATGATTCATTAGGATATTCGGTAGTG----------TTGAAATAAGT-----------AAATTTAAACTATTTTTCAAATGGCGATATGCACTTCTACATTATTTAGAATAGTAAAATTTATTTATTACTTTTTA
s caeRem4.Crem_Contig233    76811 198 -   113162 ---GACATTTGGAGTAGACCTTGGCTTGGACAAAATCTTACAATTTCAAAAGACGGG---ATTAAGTATCCCAA-----------------ATGGATCCGAATACATACTAACGAATCTAAAAGTTGTAAAGTAACACGAAAAACTACATCTGAAGTGTTACTACTACTGTGAT-TTCCATGGTTTCAGTGTCaaaaaaaG-Ggacatttttattgttttttg
i caeRem4.Crem_Contig233 I 48 I 32
s caeSp111.Scaffold576     101631 151 -   128984 AGcgattattgaaaaagtttttag----------aacTTCAAATTTCACAGAAAGTT---TGAAAGTATTCGGA-----------------ATACATTGAGATAT-TAGGAGTGCATCT-----TCGTAAGAAAG----------------TATGAAGGTTCTGAAACTGGCag-agaattgaaattaaattcagCAGCGT----------TAA---------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3097023 113 -  4147112 GAAAACCGCTG--------------------------------------GGTAGGTT---CAAACGCATATTTT-----------------ATTCAT-----CAT-CAATGGTAAA--------TTGTGAAAAgg----------------tgaaatgtttttcaaa----------aattcattcaagaATCAAAAGAGT---ATAACTATAC---------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I

a score=-7034.000000
s ce10.chrX               2354578 137 + 17718866 CTTTATCACTTAGATTTTTTAAACAAACTTTTGGAAAATATTTTATAAAG--CTAATATATAA----TAGTACAAAA---------CAGTTTA--CATACAAGAAAAAGATTGGAAGCTCTCTGCTCCAATACGAAAAAAGACTTCATTTTATT
s caeSp111.Scaffold576     101782  86 -   128984 TCCAAATATTCagattttatg-------------aaaat--------agg--CCAGTGAATTC----TTTTGCATAATAAATGTCACGACCTA----------------------AACATGCTGTTGTCAACTGA-------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3097136 132 -  4147112 TTTAAACGGAAGGATTCTTTACataaaa-tttgcaaaat--------aGGGATTAATATATTCGGAGTCTCCCGAAAGTAGTACATCTATGTAGCTATATTAGCAAACATTTAGGAATACATTTTGGGAAACTAAATCAAG-------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I
e caeRem4.Crem_Contig233    77009  32 -   113162 I

a score=-8688.000000
s ce10.chrX               2354715 109 + 17718866 AATTGTTACCTTGtatttaaaaaaaaaattaaaaatCAATCTACTCTACTCTACTCACAGCTTCAACCCTTGCTTACAATATTTCATCTGAAGCTCTGACGGCGCCGCA
s caeRem4.Crem_Contig233    77041  86 -   113162 AATTTTCACTTTGCCTTTCGCCTTCACATCGTAAGtccttct---------------ccatttc--------tttccattttctctctccagATTCCGTCAACTCCGCA
i caeRem4.Crem_Contig233 I 32 C 0
s caeSp111.Scaffold576     101868  38 -   128984 -------ATTTAG----------TCAGGCCCTGAG----------------------------------------------TCCTCTTTCAAGT--------TGCCGCT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3097268  54 -  4147112 -------ATTTAA----------ACAAGTTGTAAG----------------------CAACTTC--------------AGTTCTCTTTTCACGTTT--TCCATGCCGCA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I
e cb4.chrX               17086935 362 - 21540570 I

a score=8976.000000
s ce10.chrX               2354824 193 + 17718866 AAACCATGTTATCTTTGAACC-T-TGACGTCAGAATAAAA-ATGC-------------ACAAAATCGACAATGA--AAGGCGCTTGACATTCAGTTATTTTGT-CGGGTTT------CTAAATTCGAAAGAACACTCACCTCAAATTTTGTTTGCGAATTCTTC----TGCATTCACCCAACAACTACACAGTATTATC--------------TTCCTTAAGAATAC----TTGTCTGCA
s cb4.chrX               17087297 164 - 21540570 AAACCATGTTATCTTTGAACCTT-TGGCTTTAAAATAGA--CAAC---------------------------GA--AAAACGGCTG---TACGTTTCTC-----CGAGACT------CAAAATTCGCGA--------ACCTCCAGATTTGC------CATTTTT----TATATTC-----ACAACAGAAT-GTGTCACCGTTTATAAAATATTCTCCCCTGAATCTT----TTGTTAG--
i cb4.chrX               I 362 C 0
s caeRem4.Crem_Contig233    77127 194 -   113162 AAACCATATTATCTTTGAATC-T-TGcagtcaaaataaa--aaat----ggagaaacgacaaa---aggataga--aaaaCGCTTGACATTCGTTTAGT-----TGTGAATGCGTAGCCGAATTTAGGAA---CCTCACCTccagatt-----------ttctg----aatattc-----tcATTCAGAT-GTGTCACCAttgtcaatttgttttttcggaCGTTTC----TTGTCTGCA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     101906 201 -   128984 AAACCATGTTATCTTTGAACctcaacatttcaaaataaaacaaattttaaaagacAGGACaaa---gatagaaaagaaaacgcttgacattcgttttttgtgtgtgtgaaTGCAT--CTGAGTTTGTGAA---CTCCA-TTCCAGGTTCCC------GTTGTCC----GACTTTC-----ACAAC-AGAC-GTGTCAGC-------------TATTGTGCAAAATTTGACATCGTCTACA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3097322 176 -  4147112 AAACCATGTTATCTTTGAACCTT-TCGcgtcaaaatagaa-aaat-------------acaaa---ggaatagaa-aaaacgCTTGACATTCGTTTT-------TGTGTGTACAT--CTAAATTTGTGAA---CTCCA----CAATTGTCC------GTTATTCCTCACACATTC-----ACAAC-AGAC-GTGTCACCG------------TAGTgtgcaaatttt----ttgtctaca
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     81832 872 +   720316 I

a score=70972.000000
s ce10.chrX               2355017 375 + 17718866 -GA---GTTTTCTTTT------TGAATCCCTAACAACATTTCACTC------CGAGCT----TCCTCAAATTCTGACCTCCTTGGTCATACACATTGTGCT--CATTTTTCTT-C-ACTTCGCAATTCCCAATTCGGACACACTTTT------------------------------TT-GCATCATAAACCTCC---AGACAAGC---AACT---------TAAAAAGAGA--------------TTTTCAACGTATGTGTGGATGTGTGTGGAGGA--------GAGCAATTTGGGAAG---------GTTTCCTT--TTTTACT--CCAGTTTAACT---TTAATTATC-CTGGAGA---TCCCGGGATTGAATGCAGAGTGCAATTTTCGTCTCGCAAAA--------TTGTCGGGGGTGATTTG----CTTTTGTGTTTTGACCGTGACGACATACTT--CCAGAGTT-------CTAAGTTTATTGTGACCTTTGACCTGAA
s cb4.chrX               17087461 340 - 21540570 ------GATCCCTTGTGCAGGGGCAGACCCTAACCACATTTATCGCC-----CCTCCT----TACTC-AATCTTGACCTCGTTGGTCACATACTTTGTGC-----TTTTTTCTAC-ACTT-----TTCTCAATTCAgac---actttttttccaaatgt-----------------gTT-GCATCAGAAACCGCT---AGACacacaaaaaat-------tccaaaaaaaggatTCGGGCTCGAAATT----------------ATGTGTGCAGGGCGAGGTGGACCAGCAATTTTCCAAG-----------------------CCT--CCAGTTTAGCC---TTAATTATC-Ctcgaga-tttttc-gaaagg---gCAAGG-----------------------------------------------------ATGTGTTTTGACCATGATGACATTTATGGTCAAAGTT-------CTCAATAGTAGGTGGCCTTTAACCTAAA
i cb4.chrX               C 0 I 11
s caeRem4.Crem_Contig233    77321 351 -   113162 -Aagtcgttttctttt-------------ctaacCACATTTATTGTTGTCGGCGACCT----TACTC-AATCTTGACCTTGTTGGTCACACACTTTGTGCT--CATTCTTTCGACTACTTCGCACTTCTCAATTCAGAC---CTT--------------------------------TT-GCATCAGAAACCGCT---AGACATTC---AGAt-------tctaaaaaaaga----------gaaactt------------tgGATGTATGCGGGGGG---------AGCAATTTTGGAAG---------GTCCTTTT-CTCTCGCT--CCAGTTTAGCC---TTAATTATC-Ctagagattttttc-gaaatgaatgcAGAGTGcaatttc--tttt-cgaaa--------ttgtc--------gttt----tttgtgtgttttgaCCATGACGGAAAGTTT--CCAAAGTT-------CCT-------GGTGGTCTTTAGCCTAGG
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     102107 346 -   128984 -AA---GTTGTCTTT-----------CCCTTAACCACATTTATGAT------CGACTT----CACTC-AATCTTGACCTTGTTGGTCACACACTTTGTact--cattcattct---ttttcgcACTTCTCAATTCAGAC---ttttt------------------------------tt-ACATCAGAAACCGCC---AGACGTTT---AGTT-------GCTAAAAAGAGA--------------C-----------------TTTTGTGTAGGGGG--GCCAGCCAGCAATTTTGGAAG---------GACTCTT---TCTCACT--TTGGTTTAGTCTTTTTAATTATC-CCAGGGA---TTTC-GAATAGACCACAGAGtgcaattt---tttc-cgaaaagaaattgttgCC--------TTTT----TTGTTGTGTTTTGACCGTGACGACATCCGC--CCAAAGTT-------CCT-------GGTGGCCTTTAACCTAGG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3097498 352 -  4147112 -at---ttcttcttct-------ccacccCTAACCACATTTATCGT------CGACCT----TACTC-AATCTTGACCTTGTTGGTCACACACTTTTTGCT--CATTCTTTCC---ATTTCGCACTTCtcaattcagag---ttttt------------------------------ttcacatcagAAACCGCC---AGACattc---tgtt-------tctaaaaaagga--------------CT----------------TTTTGTGCGGGGGG------ACCAACAATTGTAGAag---------gtctcttt-ctctcact--cCAGTTTAGCCTGCTTAATTATCGTCACGGA---TTTT-GAATTGACTGCAGAGtgcaatttttgtttc-cgaaa--------ttgtc--------tttt----ttg-tgtgttttgaCCATGACGACATATGC--TCAAAGGTCTACCTACTT-------GGTGGTCTTTCACCTAAG
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     82704 389 +   720316 GAA---GTTTCTTTCT---------GTTCTTAACCACATTTAACTG------CTGCGTTTTCTGCTC-AATCTTGACCTTGTTGGTCACA----TTTTACTAGcacttttccc---ttttt----tttgcaattcagat---tttccctctctctctctcattcTTTTTATTGCTCTTT-GCATCAGAAACCGACGGGAGATTTTG---AATTTGGTTCTTCTGAAAAGCGA--------------CTT---------------GTAGAGTCACGGAa---------agcaattttggaagaaggaaGAAGACGCATTGGTCTCACCAATTATTTTGACA----AAATGATT-TTAATGA---ATGT----TAGAATGCAAAGTGcaatgcat-tttt-taaaaagaattcTTTGCG--------TTTGGATATTTCTGGATCTTTTCTGTGTAGTGATCTTT--TTTGTGCG-------ATC----------GACCTTTGACCC---
i caeJap4.Scaffold18213  I 872 C 0

a score=73.000000
s ce10.chrX               2355392 15 + 17718866 TTAGTTT-TTTTTAGA
s caeRem4.Crem_Contig233    77672 15 -   113162 AAAATCA-TTATTGAG
i caeRem4.Crem_Contig233 C 0 I 3
s caeSp111.Scaffold576     102453 14 -   128984 AT--TCTAGTTTTGAG
i caeSp111.Scaffold576   C 0 I 1
s caePb3.Scfld02_0        3097850 15 -  4147112 ATAgtct-tttttgag
i caePb3.Scfld02_0       C 0 I 1
s caeJap4.Scaffold18213     83093 14 +   720316 -TAGTTT-TGATAAAG
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17087801 11 - 21540570 I

a score=51958.000000
s ce10.chrX               2355407 212 + 17718866 CTCCTTCAGA--AAAAGCAGATGAAATCTCGATAAAAAATATTTGACCAGTACGTGAACCCTTATAAGTGGCA-CTTGCCAAAAC--TTTTTATG--GATTGTTGAGCAGAATTCATCATTTTT------CAACTCATCCTTTTTTGTTC--AAGTT-----TCTAGTCTACTGTTTAATATTCTATGACATTAGAAATCAAAAGATCTAATGATTTTTAATTGATCTGAAA--
s cb4.chrX               17087812 214 - 21540570 CTCGTTTGAAAACTATTCAGATGAAATCTCATA---------TTGACCAGTATGTGGACCTTTAGAAGTGGCCTCttgtcaaaaacttttttctgaagattgtTGAGCAagattcatcattttt------tcactCATCTTTTTGTTCTCCAAAGTCTGATGTGTAggttatttttgttttgggtCCAACAAGTGAAATCGAAAGTTCTataaattacgaaaa---tttcgA--
i cb4.chrX               I 11 C 0
s caeRem4.Crem_Contig233    77690 183 -   113162 ------------CTATTCTGATGagatctcaaa----aatatttgacCAGCTAGTGGACCTTTATGAGTGGTA-CTTatcgaaag--tttttttgaagattgttgagcaaaattcatcattttt------ctactCATCTTTTTGTTCTC--AAGTCTGTTGTAGAGTCTATTTTCGAAttgtg---agaaaatgaaatcaaaagttc-------------------TTAGA--
i caeRem4.Crem_Contig233 I 3 C 0
s caeSp111.Scaffold576     102468 153 -   128984 ------------AGTTTTTCATTAGGTCTCGAT----AATATTTGACCAGTACGTGGACCTTTAGAAGTGGCA-cttgttgaaaac-tttttctgaagattgTTGAGCagaattcatcatttttt-----ccccACATCTTCTTGTTCCC--AAGTCTGATTTTGAAGCTATTTTTAT--------------------------------------------------------
i caeSp111.Scaffold576   I 1 C 0
s caePb3.Scfld02_0        3097866 197 -  4147112 ------------agttttcgaTTAAGTCTCAAT----AATATTTGACCAGTACGCGGACCTTTATGAGTGGCA-CTtgtagaaaac-tttttttgaagattgttgagcaaaattcatcatttttc-----ctacTCATCTTTTTGTTCTC--GAGATTATTGTTCAGGCTATTTTTGTAGCCAG---AACAATTGATATCAAAA-------GTTCTACCAAAAACTGGTTAA--
i caePb3.Scfld02_0       I 1 C 0
s caeJap4.Scaffold18213     83107 177 +   720316 ------------------------CTTTTTAAA----AGGGGGTGACCAGTCCGTGGACTTTTACAAGTGCCA--------------CTTTTTTGAAGATTATTGAGCA-CATTCATCACTTTTCCAAATCTACTTGTCTTCCTG--CTC--AGAAC-----TACGCACTATTGCTTTGATC-----AAttaatgtaagaaaaaaatcaagtgaTTTTAACAGttgatcaaaaa
i caeJap4.Scaffold18213  C 0 I 234

a score=-46405.000000
s ce10.chrX               2355619 154 + 17718866 GA-----TAGATTGGTGGCTTGGAAAGAAT-----------------------ATGTGtaaaatatgataaattaaaattctaaaatttaatttCATTGCTGTTGTTATAT------------ACGCGTGTGAGAA--ACAAAATGTAAATTAATACCAGTGACAAAATACTATGAAATTTCGTTATTAAT-----CTGTA----------------
s cb4.chrX               17088026 148 - 21540570 GTGTACAGTAGTCGCTAAATTTGGAAGCGTATTTTTTCTGGTAGGGGCTCAGCATATACGATATATCAAAcatcta-----tcaactgataaaacattagtg-----atat-----------------tatgatga--ataatttatcagttg-------------------acaaattttcgctATCAAT-----GCATA----------------
i cb4.chrX               C 0 I 9
s caeRem4.Crem_Contig233    77873  37 -   113162 GT---------------------------------------------------------------------------------------------------------ATAG-----------------TTTGATGATCACAAATCACAAATAG-------------------ACAAAA---------------------------------------
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     102621  56 -   128984 -----------------------------------------------------ATGGAAGAGCTAgta----------------------aaatca-----------aaag--------------------------------ttctcAGA---------------------GTAAATTTACTTTATGGAT----------------------CAAG
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3098063 158 -  4147112 GC--GCAGAAATCGCTGATTATAAA-----------TCTGTTAG---------ATGTAAGAAATTGAATTAATCG-----------Caggaaatcatttttg-----agagattACTGTCTCTTGAGATATGACGTTACCAGTTTCTTAGT---------------------ACTAATCGGCAGTTTTGATTAAGTGAATGATAACGAAatagcaaa
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     83284 234 +   720316 I

a score=-1457.000000
s ce10.chrX               2355773 17 + 17718866 ATTCAAAAAAA-----------------TTGCCA
s caeSp111.Scaffold576     102677 11 -   128984 AATCAAAATCA-----------------------
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3098221 34 -  4147112 aaacaaaatgaggtGTTGTCTAGAAATCTAGGAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     83284 234 +   720316 I
e cb4.chrX               17088174  9 - 21540570 I
e caeRem4.Crem_Contig233    77910  0 -   113162 C

a score=-117666.000000
s ce10.chrX               2355790 734 + 17718866  
s cb4.chrX               17088183 618 - 21540570  
i cb4.chrX               I 9 C 0
s caeRem4.Crem_Contig233    77910 493 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     102688 404 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3098255 580 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     83284 234 +   720316 I

a score=83767.000000
s ce10.chrX               2356524 515 + 17718866  
s cb4.chrX               17088801 596 - 21540570  
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    78403 680 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     103092 698 -   128984  
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3098835 678 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     83518 646 +   720316  
i caeJap4.Scaffold18213  I 234 I 57

a score=9586.000000
s ce10.chrX               2357039 53 + 17718866 AGACCTTTGAGAATTAATTCGAAAATAGA--TCCTCTAAATCTCT----GCATACAAAT
s cb4.chrX               17089397 37 - 21540570 --------------------GGAAACCGA--TGCACTAAGtttttttGCACACATAAAT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    79083 38 -   113162 AG---------------TTCTGAAATAGA--TGCTTTAAATCTCT----GCACATTAAT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     103790 36 -   128984 -----------------tttcaaaataga--cGCTTCAAATCTGT----GCACATAAAT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3099513 40 -  4147112 ga---------------tttttaaatAGGATCCTTTTAAATCTCT----GCACATAAAT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     84164 57 +   720316 I

a score=90297.000000
s ce10.chrX               2357092 336 + 17718866  
s cb4.chrX               17089434 366 - 21540570  
i cb4.chrX               C 0 I 2279
s caeRem4.Crem_Contig233    79121 358 -   113162  
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576     103826 366 -   128984  
i caeSp111.Scaffold576   C 0 I 3
s caePb3.Scfld02_0        3099553 392 -  4147112  
i caePb3.Scfld02_0       C 0 I 3
s caeJap4.Scaffold18213     84221 406 +   720316  
i caeJap4.Scaffold18213  I 57 C 0

a score=-2891.000000
s ce10.chrX               2357428 7 + 17718866 ----ATGTTTT
s caeRem4.Crem_Contig233    79480 6 -   113162 ----ttcttt-
i caeRem4.Crem_Contig233 I 1 I 26
s caeSp111.Scaffold576     104195 7 -   128984 ----cactttt
i caeSp111.Scaffold576   I 3 C 0
s caePb3.Scfld02_0        3099948 7 -  4147112 ----CTGTTTT
i caePb3.Scfld02_0       I 3 C 0
s caeJap4.Scaffold18213     84627 7 +   720316 GTCGCAC----
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17089800 2279 - 21540570 I

a score=-8232.000000
s ce10.chrX               2357435 46 + 17718866 CACATACATGACAT----------ACATGAATTATCA----------TTTTCACGACGGACGTTTT
s caeSp111.Scaffold576     104202 52 -   128984 ---gtgTGTGCTCTTTTGTGACG-ACATCACTAATTT----------TCGTCTTTTAATTCagttt
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3099955 54 -  4147112 CCAGCAAAGGATTTCGTGGTATGTATAAAATTAATCT------------ATCAATTATTAAGGCGT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     84634 38 +   720316 ----------------------------AACTAACCTGacacgcaattcaattcataTTTCAGttt
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17089800 2279 - 21540570 I
e caeRem4.Crem_Contig233    79486 26 -   113162 I

a score=-62883.000000
s ce10.chrX               2357481 402 + 17718866  
s caeRem4.Crem_Contig233    79512 483 -   113162  
i caeRem4.Crem_Contig233 I 26 I 14
s caeSp111.Scaffold576     104254 477 -   128984  
i caeSp111.Scaffold576   C 0 I 34
s caePb3.Scfld02_0        3100009 500 -  4147112  
i caePb3.Scfld02_0       C 0 I 11
s caeJap4.Scaffold18213     84672 496 +   720316  
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17089800 2279 - 21540570 I

a score=-5255.000000
s ce10.chrX               2357883 38 + 17718866 -TTTGAAAGGTGTA------------TAATTATTATTTTTTTTGTATCAAA-----------
s caeRem4.Crem_Contig233    80009 35 -   113162 -CTGGAAAGAAGga---------------tcctttttttcattttacttcc-----------
i caeRem4.Crem_Contig233 I 14 I 5
s caePb3.Scfld02_0        3100520 38 -  4147112 -ccAGGAAGAATAG------------CATttccttattattttttattccc-----------
i caePb3.Scfld02_0       I 11 C 0
s caeJap4.Scaffold18213     85168 62 +   720316 TCTGAAGATAATTGGTGTGTGGGCCACGTTTACAATTACCGTAGGATCTAACGAGGTGGAAA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17089800 2279 - 21540570 I
e caeSp111.Scaffold576     104731 34 -   128984 I

a score=40776.000000
s ce10.chrX               2357921 236 + 17718866 AATTGCTTT------CTTCCTTTATAT---------TGCCTTTTTATTGCCAAACACCAAAATACAAGTTTTTCTTCTTCTTCTTAGTTTCCGTGAAGCAAATGTTTATAGAATCGCAACGGAGTGGGAACAAATGCTT----------------AGAAAATTTGCAGAAG----------------------TTGACCATATACGGGTCATTCTTGCCCTCGATTTTTGTGCTTCTGCCTGCT-AAACA-TTTTGATTTTTGC-CA----GCACT--------------TTTTAAGAAA-----GAACTTTTCT--
s caeRem4.Crem_Contig233    80049 218 -   113162 aatttcctt------cttctttacttgccttttt--cttattcttattgtCAAACATCATAATacaaaat------------gtaagtttt--tagaagaaatGTTTATAGAATTGA---------GGAACAGGCGCTT----------------CCCACTTTTGCAAGAG---------------------TTTGACCAGGCA-GGGTCAATCTCATTCTCGATTTTTGTG---CTACGTCAC-AAACA-TTTCGATTTTCGCTCG----GTgct--------------cttttttgga-----aaacttttcT--
i caeRem4.Crem_Contig233 I 5 I 1
s caeSp111.Scaffold576     104765 224 -   128984 aattctttt------cttcttttttggcacttcct-ttcttttttattgtcaAACATCAAAATACATAAA------------GTTAGTCTT--TAAAAGAAATGTTTATAGGATTGC---------GGAACAGGCGCTT----------------CCCATACTTGCAAAAT---------------------TTTGACCAGGCCGGGGTCAGTTTTGCCCTCGATTTTTGTG---CTACGTCAC-AAACA-TTTAGATTTTcgctcattttttgtc--------------tcttttgaAG-----GAATCCCTTT--
i caeSp111.Scaffold576   I 34 I 16
s caePb3.Scfld02_0        3100558 231 -  4147112 aatttttttgggag-cTTCCTTATTGTTagtttcgatttcttcatatttccaaacatcaaaatacaagaa-----------tgtaagtttt--tgaaagaaatgtttatggAATTGA---------GGAACAGGCGCTT----------------CCCACATTTGCAAGAT---------------------TTTGACCAGGAC-GGGTCAGTTTTGCCCTCGATTTTTGTG---CTACGTCAC-AAACA-TTTCGATTTTCGCTCA----GTgct--------------ctttttgaagttggaaaaagCCTTT--
i caePb3.Scfld02_0       C 0 I 16
s caeJap4.Scaffold18213     85230 255 +   720316 ---------ATGTGACTTTTTTGTGctcaattttgttttccatcTTTTGGTCAACCTCAAAATACA----------------CTTTGTTCC--GGAGTGAAATGTTTATAAAAATTC------GTTAAAACAGACGCATTCATGCTAAGAGCAAGTCAGAATTTgcagaaaaagaaataatggAAACGAATTTTTGACCCAA---CGGTCACTTTT--------------TG---CAACGGAACtaaacattttcaatttttgctct----TTGTCGAAAAAGTACgtagaatcaaaaat-----aaacatCATTTA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17089800 2279 - 21540570 I

a score=26742.000000
s ce10.chrX               2358157 63 + 17718866 -------------TGCTGGT--------------------CTTTCTGGTCTTTAGACTTGCCTTATAACAGTTTGAA---------GC-AAATGTGTTTTCACTCT
s cb4.chrX               17092079 66 - 21540570 -------------TACTTTT--------------------CTGCTTAATCTTTA------GCCTATGACAGTTTGAAAGGAAGGAGGA-AAATGTGTTTTCACTTT
i cb4.chrX               I 2279 C 0
s caeRem4.Crem_Contig233    80268 83 -   113162 -------------GACTTTTAAAAAGAATCTAGGGGAAAACTTTCCGTTCTTCAGACTT-GTCTATGacagtttgaaa--------ga-aaatgtgttttcacttt
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576     105005 62 -   128984 -------------CACTTTT--------------------ATTC-TGTTCTTTCGACTTCCCTTATGacagtttgaa---------ga-aaatgtgttttcactct
i caeSp111.Scaffold576   I 16 C 0
s caePb3.Scfld02_0        3100805 63 -  4147112 -------------GACTTTC--------------------CTACATATTCTTTAGACTTTCTTTATGACAGTTTGag---------ga-aaatgtgttttcacttt
i caePb3.Scfld02_0       I 16 C 0
s caeJap4.Scaffold18213     85485 71 +   720316 TCTCATTCGCTCTAAATATA--------------------ATCCGTGCCTTTTA------ACTCAAGAGAGTTTGAA---------GCTAAACGTGTTTTCACTTT
i caeJap4.Scaffold18213  C 0 I 5

a score=4603.000000
s ce10.chrX               2358220 36 + 17718866 TC---CACTTTTCTCTTCTTATTCTCTCGAGCATTTTCA
s cb4.chrX               17092145 31 - 21540570 TCGGATTCTATTC--------TTCTCTCGAGCACGTTAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    80351 24 -   113162 tc---cactAT----------TTCTCTCGAGCAC--TAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     105067 25 -   128984 tct--cacttt----------tcttctcgagCAC--TAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3100868 19 -  4147112 --------ctt----------ttctctcgaGCAC--TAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     85556  5 +   720316 I

a score=155542.000000
s ce10.chrX               2358256 669 + 17718866  
s cb4.chrX               17092176 635 - 21540570  
i cb4.chrX               C 0 I 47
s caeRem4.Crem_Contig233    80375 660 -   113162  
i caeRem4.Crem_Contig233 C 0 I 31
s caeSp111.Scaffold576     105092 659 -   128984  
i caeSp111.Scaffold576   C 0 I 32
s caePb3.Scfld02_0        3100887 629 -  4147112  
i caePb3.Scfld02_0       C 0 I 30
s caeJap4.Scaffold18213     85561 534 +   720316  
i caeJap4.Scaffold18213  I 5 I 5

a score=-4235.000000
s ce10.chrX               2358925 41 + 17718866 AAAACACTATGCATA--------GTCGGCGACAT-----------------TTCAAACATCCGTCA
s caeRem4.Crem_Contig233    81066 46 -   113162 aaaacattGAGCACACACTGCTTGC-ACAGACTCAA--------CGCAACGTCCA-----------
i caeRem4.Crem_Contig233 I 31 C 0
s caeSp111.Scaffold576     105783 41 -   128984 AAAACACTGCAAATA--------GT-GCAGAC----------------ATCTTCAGATTTCCGATG
i caeSp111.Scaffold576   I 32 C 0
s caePb3.Scfld02_0        3101546 47 -  4147112 aaaacattgagaatA--------GT-GTAGACGT----------CGCAACCTTCACATTTCCGATG
i caePb3.Scfld02_0       I 30 C 0
s caeJap4.Scaffold18213     86100 46 +   720316 AGAATATTGAAACGA--------GT-GAGTGCaaaaaaaGTCATAAGAACCCTCA-----------
i caeJap4.Scaffold18213  I 5 C 0
e cb4.chrX               17092811 47 - 21540570 I

a score=23731.000000
s ce10.chrX               2358966 46 + 17718866 TATTTCCT-------------TATTCCT-TTACAATTTCTGATTTTTTGTACTTGTAAGG
s cb4.chrX               17092858 51 - 21540570 CATTTCCGATG--------TGTATTTCC-TTacaattcttgattttttgtactTGTACTG
i cb4.chrX               I 47 I 45
s caeRem4.Crem_Contig233    81112 49 -   113162 TATTTCCGA----------CGTATTTCC-TtacaaattctgattttttgtacTTGTACTG
i caeRem4.Crem_Contig233 C 0 I 38
s caeSp111.Scaffold576     105824 39 -   128984 ---------------------TATTTCCTTtacaaattttgattttttgtactCATATTG
i caeSp111.Scaffold576   C 0 I 22
s caePb3.Scfld02_0        3101593 38 -  4147112 ---------------------GATTTCCCTTAc-aactctgattttttgtacttgTACTG
i caePb3.Scfld02_0       C 0 I 28
s caeJap4.Scaffold18213     86146 58 +   720316 TGTTTCCGTTAACTTCCTTCCTATTTCC-TTAC-CACGCTGATTTTTTGTACTTGCTTTT
i caeJap4.Scaffold18213  C 0 C 0

a score=-2252.000000
s ce10.chrX               2359012 13 + 17718866 TATACACGCAGTC-----
s cb4.chrX               17092954 13 - 21540570 tttacttCATGGC-----
i cb4.chrX               I 45 C 0
s caeSp111.Scaffold576     105885 13 -   128984 TTTATTGACTTCC-----
i caeSp111.Scaffold576   I 22 I 5
s caePb3.Scfld02_0        3101659 13 -  4147112 tttatttgacttc-----
i caePb3.Scfld02_0       I 28 I 5
s caeJap4.Scaffold18213     86204 16 +   720316 --TATTtggcgggaaaaa
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    81161 38 -   113162 I

a score=28389.000000
s ce10.chrX               2359025 40 + 17718866 CCAGTTTCTAGTTTGACCCCCCAACCT---------TCTATCTTTACAC
s cb4.chrX               17092967 41 - 21540570 TCGGTTTCTAGTTTGACCCAT--AGCTACT------CCTATTTTTACAC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81199 47 -   113162 CCAGTTTCTAGTTTGACCCAT--ACCTCCTAGCTTCCCTATTTTTACAC
i caeRem4.Crem_Contig233 I 38 C 0
s caeSp111.Scaffold576     105903 41 -   128984 CAGGTTTCTAGTTTGACCCAT--ACCTACC------CCTATTTTTACAC
i caeSp111.Scaffold576   I 5 C 0
s caePb3.Scfld02_0        3101677 38 -  4147112 CCAGTTTCTAGTTTGACCCAT--ACCTA---------CTATTTTTACAC
i caePb3.Scfld02_0       I 5 C 0
s caeJap4.Scaffold18213     86220 35 +   720316 aaaatctctagTTTGACCCGA--G------------Gctatttttacac
i caeJap4.Scaffold18213  C 0 I 149

a score=3470.000000
s ce10.chrX               2359065 67 + 17718866 --CAGTACTGCATACATTTTCGTGAAA---CTTTG---TTTTC-------------------TTTGTTTTT-CGTACAGCTCAT-CCTTAGCCTTT
s cb4.chrX               17093008 64 - 21540570 --TAtt--tgaatattctttt---------tttca---cccTCCGCCGG-------------CTTTCTTCT-CCCGC--CTCATCCCGAGGGCTTC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81246 81 -   113162 --TACT--ggaatattctctt---------ttttctttttctcggtcggtttgaaacttttcttttcttct-ccctccactcat-ccgcatttttc
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     105944 71 -   128984 --TACT--TGCATATTCCtgcctcaaaaacttttgcgtttctt-------------------ttgtttttt-tcctcgACTcat-ccttcattttt
i caeSp111.Scaffold576   C 0 I 289
s caePb3.Scfld02_0        3101715 72 -  4147112 TATACT--TGTATATTCTCACCTCGAAA--Ctttgcttttctt-------------------ttgttttttctccacaACTCAT-CCCTATTTTTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I

a score=-13613.000000
s ce10.chrX               2359132 174 + 17718866 ---------------GAAAACAATAGAGGTATAATT---------------------------TGCATGTGACGTT--------------------AGGTGGGACAAACAAAAATAAGAGATATAC----------CTGTTCAATCTATATCAGAAATC------AAAAAC----AAATCAATCAATCACC---AAATCACCA-----------AATAAAAGT---------TTAAATCTAAGACGAGATTATGCTAATTCATGAACTTCAGTTTTATT
s cb4.chrX               17093072 197 - 21540570 CAggtagaagaagaacaaaacaaaaaccttatttttttcaaaaaattttttttgaatattttcaatttgtcacGTGGGT-----------------GAGGGTGACT-------------------CCGCGAAGAGTCTAATTgccttatttcaaaaatcagggc-aaaacctcaaaaacaaattgatcCTCTGGAGATTCTTG----ATTAGACACTCTGATT----TGGGCTTGATTTGAT-------------------------------------
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81327 203 -   113162 CAGgt------ataacaaaacaaaa--cgtACTTTT-----------------------------CTTGTCACGTG----------------------GGGTGACT------------AGTGCTCCCTAGTCAATGCTAATTAagttattccaaaaatcagttctaaaaaataaaaaatttattcatcctc-----atctttaaattataaaacattaaaaataccAGGAACTTAAATCGATGATAAGATTAACATAATCTCTTAACATACTTTCCATT
i caeRem4.Crem_Contig233 C 0 I 66
s caePb3.Scfld02_0        3101787 185 -  4147112 -AGgt------agaacaaaacaaaaaacgtacTACT----------------------TGATTTAGTTTTCACGTCGgctctttttctcaacaataGGGAGTCACA------------AGATTTCC----------TTAATTGATATAATTCAGAAATCatatttggaaactgaaaaatat-----tattc-----ataCTTG------------TTATGAGT-------TCCAAAATTGATGATGAGATTAGACTAATTTGTCT--------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeSp111.Scaffold576     106015 289 -   128984 I

a score=-1355.000000
s ce10.chrX               2359306 67 + 17718866 TATCAGA-------CTAGTTTCAACTTCTCACTCTTTTTATTTATTCACTCTTATTTTTT---ATGCATTATTATTC
s cb4.chrX               17093269 75 - 21540570 CATAAGATTATCATAAAGTGCCA--TTTCCGATTTGtcttgtttcttgttttttatccGCTGGAAAACTCAACATCT
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3101972 63 -  4147112 GTTGAGA-------ACAGTTTGA--TCTTCTCTCATTCTGATTTTATGCTCTTATTGCTC-----AGTTTATAATTT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeSp111.Scaffold576     106015 289 -   128984 I
e caeRem4.Crem_Contig233    81530 66 -   113162 I

a score=-1094.000000
s ce10.chrX               2359373 385 + 17718866 TGCAA---TAAATTTTCAAAAAAAAATTTTAAAGGTGGCATAG-----------CGAGAATTTTTCGAAATTTGGAAA----AATCTC-AGTTTTTGCCACTTTTTCGGAAAATATCGGTTAAGATCAACAAATGTCT-ATTCATGTTTCAAATAATAATCACACTGAAAGAAATCGAACA--TGTAACAATGCTATAG---TTTTCTCAAAAAGTGGCAA----------AAACTCAGCAATTGCCATTTTTGACTCGATTTTTTGACTTGGTTTGAATATTCCAAAAAACCTTGTTTTCAGATGaaataaatat------ttttaaatattttcacgtggtgccagagcctcttatttcggcttggcctacgcaaatctacaaaaaagacgcagagttctcaactgattttgcatggttaagaa
s cb4.chrX               17093344 370 - 21540570 TGAAGACTcagatttt--attgaaaatttcagaatagcCCAAGAATAATTTATCTGAGcacttctggaagttttggaatCCTGCTCTCcagtttcagccaagttataCGA-------GTTTCAGTTCcccaaaaatcggatttccGTGCGAAACAGCAGTTTT-CCAAGACAGTTTGTACAATTTCTAGGacgttttagaaatttttttaga--gcGACATTTGTTGCGTTGAACTCAGAA---------TTCGAtacaatttcatatttttaat--aatttctcaaaaatttttgtttatgatttgagaaaatgtcacaaatatgaaattttctca------------------tattttgagTTGA-------------ACACAACGAATTTCATGTTCTAAAGTGTCCTTGAA--GTTGAGAA
i cb4.chrX               C 0 I 147
e caePb3.Scfld02_0        3102035   0 -  4147112 C
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeSp111.Scaffold576     106015 289 -   128984 I
e caeRem4.Crem_Contig233    81530  66 -   113162 I

a score=0.000000
s ce10.chrX               2359758 169 + 17718866 cgtatttactgatgttacattttttgggcaaaaaattcccgcattttttgtaggtcaaaccataatgcggcagcctggcaccaagtAATTTTAGCAATTAATTTTAAAGGAATAAGACATAAAAGGCGGTAGGAAGTGGAAATCAAGTCTAAAATAATTTCTGGTTCAT
e caePb3.Scfld02_0        3102035   0 -  4147112 C
e caeJap4.Scaffold18213     86255 149 +   720316 I
e cb4.chrX               17093714 147 - 21540570 I
e caeSp111.Scaffold576     106015 289 -   128984 I
e caeRem4.Crem_Contig233    81530  66 -   113162 I

a score=169.000000
s ce10.chrX               2359927 131 + 17718866 GTTGACAAAACTTTTAAGTTTACCT---CCTTCAAAAACACTTCGCAACATTTTTTAGAATTCTCATAATCCATT--------TTGATCAT---TTTCAGTTT-----------------TGAAAACCAATTTC-----GCTACTTCATCTTTAACTAAATAATCAA
s cb4.chrX               17093861 154 - 21540570 gttgaCAAGATGTCTAGATTCCTctgttatttcaaaaa----tcacaaaaaatgttaaaa--aacaTTATCCTCTGGAGATTCTTGATTAGATATTTTGGTTTATGGCCTGAACTTGACTCgatcatcaattttttcttgcttctt-ATCCTCAACTAATT------
i cb4.chrX               I 147 C 0
e caePb3.Scfld02_0        3102035   0 -  4147112 C
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeSp111.Scaffold576     106015 289 -   128984 I
e caeRem4.Crem_Contig233    81530  66 -   113162 I

a score=-579.000000
s ce10.chrX               2360058 22 + 17718866 TCTAATTGACGCCAG----ATTTTGG
s cb4.chrX               17094015 17 - 21540570 ----Tcgaattcca-----atttcaa
i cb4.chrX               C 0 C 0
s caePb3.Scfld02_0        3102035 25 -  4147112 TCTAATAGATACCAAATATATTTCA-
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeSp111.Scaffold576     106015 289 -   128984 I
e caeRem4.Crem_Contig233    81530 66 -   113162 I

a score=84.000000
s ce10.chrX               2360080 2 + 17718866 AA
s cb4.chrX               17094032 2 - 21540570 aa
i cb4.chrX               C 0 I 7
s caeSp111.Scaffold576     106304 2 -   128984 AA
i caeSp111.Scaffold576   I 289 C 0
s caePb3.Scfld02_0        3102060 2 -  4147112 TG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I
e caeRem4.Crem_Contig233    81530 66 -   113162 I

a score=8611.000000
s ce10.chrX               2360082 51 + 17718866 TTTCAGATCGAA---ACTATGAGCCAACTAAAATCCAAATGAAGTTGCA------CACAA
s cb4.chrX               17094041 51 - 21540570 tttcagattatgaCTACTATGAGTTAACGGGAATCTAC---TACGAATA------AAACA
i cb4.chrX               I 7 C 0
s caeRem4.Crem_Contig233    81596 46 -   113162 tttcagattgga---aCTATGAGTTAACTAAAACTT-----CAGTCATT------CAAAA
i caeRem4.Crem_Contig233 I 66 C 0
s caeSp111.Scaffold576     106306 52 -   128984 ATTTAGATTGGA---ACTATGAGTTAACTACACCTC-----CATCTACAGTACAGAACAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3102062 49 -  4147112 ATTCAGATTGGA---ACTATGAGTTAAC-AAAGCTA-----CACCTTCAGTAC--AACAA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86255 149 +   720316 I

a score=125829.000000
s ce10.chrX               2360133 153 + 17718866 TGATACGATTTCTTCTTTCCGTGTGCTGCATTGTGAACGTCTTCGAATCAGCAGATTTGGCCTTCATACCGCTCACCAAAGCGTTTCTTGACAAACTGAAAAATGAAACTTTGTACAACAGATTTGCAACTCCAACACAATATGACGGTGAGT
s cb4.chrX               17094092 153 - 21540570 TGATACGGTTCTTTCTAACCGCGTTTTGCATCCTCAACTCTTTCGAACCCACCAACTCGGCTTTCATCCCGCTTACCAAGAAGTTTTTGGACAAACTCAAAAACGAGACGCTCTATAACAAATTTGCGACACCGACACAGTATGATGGTGAGT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81642 153 -   113162 TGATACGATTTCTTCTCACCGCTCTGTGCGTGGCTAACTCGTTCGACTCAGCCGACTTGGCATTCATTCCGCTGACAAAGAAGTTTTTGGACAAGCTGAAAAACGAAACACTTTACAACAAGTTCGCCACTCCAACCCAATATGACGGTGAGT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     106358 153 -   128984 TGATACAATTCCTGCTCGCAGCTCTGTGTATCATCAACTCGTTTGAATCTGGTGACTTGGCATTCATACCGctcacaaaaaagtttctcgacaaattaaaaaatgagacaCTATACAACAAGTTTGCAACTCCAACCCAATATGACGGTGAGT
i caeSp111.Scaffold576   C 0 I 19
s caePb3.Scfld02_0        3102111 152 -  4147112 TGATACGATTTCTGCTCTCAGCACTTTGTATCATCAACTCGTTCGAATCTGGCGACTTGGCGTTCATTCCACTCACGAAGAAGTTTCTcgacaaactgaaaaatgagacattGTACAACAAATTTGCAACTCCAACTCAGTATGACGGTAAG-
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     86404 153 +   720316 TGCTGCAATTATTGCTTTCCGTATGCTGTGTCGTCAATGTATTCGAGACTGCCGACATGGCTTTCATTCCCctcaccaaaaaatttttggacaaaCTCAAAAACGAGACTTTGTACAACAAGTTTGCGACACCCACGCAATATGATGGTGAGT
i caeJap4.Scaffold18213  I 149 C 0

a score=-13789.000000
s ce10.chrX               2360286 45 + 17718866 GAACCATTCTTCATT-TCTATTTCAGACTAGGGTTACATTTTCTTT
s cb4.chrX               17094245 18 - 21540570 -----------------------CAAACTAACATGGGTTTC-----
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81795 19 -   113162 ----------------------CCGGACTAAAAGTAACCTT-----
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3102263 19 -  4147112 --------cctcatt-----tttcga--taacaT------------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     86557 33 +   720316 -------TTTGGGTTGTCAGTTTGCAGCTAAATGTCCAGT------
i caeJap4.Scaffold18213  C 0 C 0
e caeSp111.Scaffold576     106511 19 -   128984 I

a score=98396.000000
s ce10.chrX               2360331 209 + 17718866 ----------GGGTTGGACATGGGGTGTACTGAAAAATA-------ACGA-----ACAGCACTATTCCTT--------------------------------TCTGACTCCAGTTCTTTCCTTTTTCATTTATCA-TGTTTTTAGAGTATATACGCGTTCACGGTACAGGTATGAACGAG-------TGTTGCAG-GCTTTCTCTTCTTA--CATAACTGTTGCTTTCATTTTTTTCTCT---GAGAGATTGTTTTCTG--ACACCGCT-------ACACACTAAA
s cb4.chrX               17094263 250 - 21540570 ----------GGGTTGAGG-GTGACTAAAATAACA-ATGAATCCGCACAGAGCACATAGAGAGGATTTCAAGAGtgactctctctctctctctctctctctctttttctctatctatc----------tTAAAACCTTTTTATAGAGTATATACGCGTTCACGGTCCAGGTATGAACGAGAGTGTTTTGTTTAAG-GCTTT-TCTTCTTACTCTTAACTGTTGCTTCTA------TTTCC---GGAAGATT-CTTTCTG--ACACTGCTGATACACACACACTAAA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    81814 191 -   113162 ----------GGGTTGGGT-TGGGGTGAACTGAAA-ATA-------ACGAAACCCACAGCACAGTTTCCA---------------------------------TTGACTCAAAATGGT----------TTTATCATTGTTTTTAGAGTATATACGCGTTCACGGTCCAGGTATGAACGAG-------TGTTGCAG-GCTTT-TCTTCTTA--ATTAACTGTTGCTTT--------TCTCT---GAGAGATT--TTTCTG--ACACCGCT-------ACACACTAAA
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576     106530 203 -   128984 ----------ggGTTCGGT-TGGGGTGGACTGAAATATA-------ACGACACCCACAGCACACTATTCT--------------------------TTATCCATTGACTC-AAATGG-----------TCTATCATTGTTTTTAGAGTATATACGCGTTCACGGTCCAGGTATGAACGAG-------TGTTGCAG-GCTTT-TCTTCTTA--CTTAACTGTTGCTTTT-------TCTCT---AAGAGATT--TTTCTGACACACCGCTGAT----ACACACTAAA
i caeSp111.Scaffold576   I 19 C 0
s caePb3.Scfld02_0        3102282 188 -  4147112 ----------GGGTTGGGT-TGGGGTGTACTGAAA-ATA-------ACGATACCCACAGCACAT---------------------------------------TTGACTCAAAATGGT----------TTTATCATCGTTTTTAGAGTATATACGCGCTCACGGTCCAGGTATGAACGAG-------TGTTGCAG-GCTTT-TCTTCTTA--CTTAACTGTTGCTTTT-------TCTTG---AGAGATTT--TTTCTG--ACACCGCT-AT----ACACACTAAA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     86590 182 +   720316 ATAATGCACGGGATCCGGT---------GTTgaaaaaga-------atgtaa--------acaaaTACTT---------------------------------CTga---------------------tgaaaca-tgtttttagagTATATACGCGTTCACGGTCCAGGTATGAACGAG-------TGTTGCAGAGCTTTCTCTTCTTA--AATAACTGTTGCTTTT-------TCTTTCTCAAAACAGA--TTTTTG--ACACCGCT-AT----ACACACTAAA
i caeJap4.Scaffold18213  C 0 C 0

a score=1910.000000
s ce10.chrX               2360540 2 + 17718866 CA
s cb4.chrX               17094513 2 - 21540570 CA
i cb4.chrX               C 0 I 12
s caeSp111.Scaffold576     106733 2 -   128984 CA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3102470 2 -  4147112 CA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     86772 2 +   720316 CA
i caeJap4.Scaffold18213  C 0 C 0
e caeRem4.Crem_Contig233    82005 2 -   113162 I

a score=5887.000000
s ce10.chrX               2360542 6 + 17718866 CTGTTC
s cb4.chrX               17094527 6 - 21540570 ctgttt
i cb4.chrX               I 12 C 0
s caeRem4.Crem_Contig233    82007 6 -   113162 CTGTTC
i caeRem4.Crem_Contig233 I 2 C 0
s caeSp111.Scaffold576     106735 6 -   128984 CTGTTC
i caeSp111.Scaffold576   C 0 I 2
s caePb3.Scfld02_0        3102472 6 -  4147112 CTGATC
i caePb3.Scfld02_0       C 0 I 2
s caeJap4.Scaffold18213     86774 6 +   720316 CTGTTG
i caeJap4.Scaffold18213  C 0 C 0

a score=60.000000
s ce10.chrX               2360548 2 + 17718866 TA
s caeJap4.Scaffold18213     86780 2 +   720316 CA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3102478 2 -  4147112 I
e cb4.chrX               17094533 0 - 21540570 C
e caeSp111.Scaffold576     106741 2 -   128984 I
e caeRem4.Crem_Contig233    82013 0 -   113162 C

a score=5190.000000
s ce10.chrX               2360550 11 + 17718866 AACGTTT-------TGCT
s cb4.chrX               17094533 18 - 21540570 ttcattttcctctcTGCT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    82013 11 -   113162 AACGTTT-------TGCT
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     106743 11 -   128984 AACGTTT-------GGCT
i caeSp111.Scaffold576   I 2 C 0
s caePb3.Scfld02_0        3102480 11 -  4147112 CGTTTTT-------CGCT
i caePb3.Scfld02_0       I 2 C 0
s caeJap4.Scaffold18213     86782 10 +   720316 -ACGTTT-------TGCT
i caeJap4.Scaffold18213  C 0 I 2

a score=1910.000000
s ce10.chrX               2360561 2 + 17718866 CA
s cb4.chrX               17094551 2 - 21540570 CA
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    82024 2 -   113162 CA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     106754 2 -   128984 CA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3102491 2 -  4147112 CA
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86792 2 +   720316 I

a score=36688.000000
s ce10.chrX               2360563 68 + 17718866 C-AGTCTCACGTC----AGCTT--TTCGCACTAATTCGTGTCATTTGTCCTTAGGAATCA-------CTTAGATCATGTGTT-
s cb4.chrX               17094553 72 - 21540570 CAAGTCTCACGTCAAATGGCTTTCTTTGCACTAATACGTGTC---TGTCGATAGGACTCATCACGCCCGTAGATT--------
i cb4.chrX               C 0 I 27
s caeRem4.Crem_Contig233    82026 71 -   113162 C-AGTCTCACGTC-AACGGCTT--TTCGCACTAATTTGTGTCATTTGTCCTTAGGAATCA-------CGTAGATTAGATGTG-
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576     106756 72 -   128984 CAATTCTCACTTC-AACAGCTT--TTCGCACTAATTTGTGTCATTTGTCCTTAGGAGTCA-------CATAGATACTGATTC-
i caeSp111.Scaffold576   C 0 I 3
s caePb3.Scfld02_0        3102493 71 -  4147112 CAA-ACTCACTTG-AAAAGCTT--TTCGCACTAATTCGTGTCGATTGTCCTTAGGAGTCA-------CATAGCtaatatttt-
i caePb3.Scfld02_0       C 0 I 5
s caeJap4.Scaffold18213     86794 72 +   720316 -CAATCTCACGTC-TTTGGCTT--TACGCACTAATTCATGTCATTCGTCCCTAGGAGTCA-------CGTAGAATTTTCTATA
i caeJap4.Scaffold18213  I 2 C 0

a score=-4826.000000
s ce10.chrX               2360631 5 + 17718866 GT---CAA---
s caeRem4.Crem_Contig233    82098 5 -   113162 GTAAT------
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576     106831 2 -   128984 GT---------
i caeSp111.Scaffold576   I 3 C 0
s caePb3.Scfld02_0        3102569 2 -  4147112 tt---------
i caePb3.Scfld02_0       I 5 C 0
s caeJap4.Scaffold18213     86866 5 +   720316 GT------TAA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17094625 27 - 21540570 I

a score=47067.000000
s ce10.chrX               2360636 86 + 17718866 ------CTGATT--TTTTATTCTTTTCAATTTTCAGGTGTCCCTACAAACGTCACATTATCTATGTTTATCGAAGGAATGAGCTCATTCAGTAA
s cb4.chrX               17094652 86 - 21540570 ------CTGATT--GTCTAACCCGTTTCTTATTCAGATGTGCCAACAAATGTCACGCTTTCGATGTTCATTGAAGGAATGAGCTCATTTAGTAA
i cb4.chrX               I 27 I 26
s caeRem4.Crem_Contig233    82103 84 -   113162 ------CTGATTTGatttaatgatttt----ttcagatgttccgACGAATGTCACACTTTCAATGTTTATCGAAGGAATGAGTTCCTTCAGTAA
i caeRem4.Crem_Contig233 C 0 I 13
s caeSp111.Scaffold576     106833 82 -   128984 ------CTGATT--TCTCATATCTCAT----TTCAGGTGTTCCGACAAACGTCACATTATCCATGTTCATTGAAGGAATGAGCTCATTTAGTGA
i caeSp111.Scaffold576   C 0 I 25
s caePb3.Scfld02_0        3102571 54 -  4147112 ------ctgatt--cCTGATTTTACAT----TACAGGTGTTCCGACAAACGTCACACTATCCATGT----------------------------
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     86871 88 +   720316 TAGGTCGTAGtt--tattattcatttt----tcCAGGTGTCCCTACTAATGTCACTCTGTCCATGTTCATCGAAGGAATGAGCTCTTTCAGTAA
i caeJap4.Scaffold18213  C 0 C 0

a score=191.000000
s ce10.chrX               2360722 2 + 17718866 GA
s caeJap4.Scaffold18213     86959 2 +   720316 GA
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3102625 0 -  4147112 C
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I
e caeRem4.Crem_Contig233    82187 13 -   113162 I

a score=0.000000
s ce10.chrX               2360724 23 + 17718866 TATTTTCAATCAATTCTAAATTT
e caePb3.Scfld02_0        3102625  0 -  4147112 C
e caeJap4.Scaffold18213     86961  0 +   720316 C
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I
e caeRem4.Crem_Contig233    82187 13 -   113162 I

a score=522.000000
s ce10.chrX               2360747 17 + 17718866 GAAAAAttcaatgaagg
s caePb3.Scfld02_0        3102625 10 -  4147112 -------TCATTGAAGG
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86961  0 +   720316 C
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I
e caeRem4.Crem_Contig233    82187 13 -   113162 I

a score=0.000000
s ce10.chrX               2360764 126 + 17718866 cgcctgagcgcctgccgcgctagccttccggcgccccgcgttttttttattattcgaagcgaaacccaaaaaatgtcggacgctccaaagcgtccatttatcgcactatgtggttcaaacTTGAAG
e caePb3.Scfld02_0        3102635   0 -  4147112 C
e caeJap4.Scaffold18213     86961   0 +   720316 C
e cb4.chrX               17094738  26 - 21540570 I
e caeSp111.Scaffold576     106915  25 -   128984 I
e caeRem4.Crem_Contig233    82187  13 -   113162 I

a score=-806.000000
s ce10.chrX               2360890 58 + 17718866 AATGACTaactgtgctcaattaaacaaatttcgtaattagacttctcaaaaaaaaatt
s caePb3.Scfld02_0        3102635 24 -  4147112 AATGA--------GCTCG-TTCAGtaagttttg-------------------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     86961  0 +   720316 C
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I
e caeRem4.Crem_Contig233    82187 13 -   113162 I

a score=-11259.000000
s ce10.chrX               2360948 87 + 17718866 caaaaatgttttatggtggttcaaagttttgaaataattactctACATCAAACCGTTGCTCTTCTAATTGTGAGGCCTCATAGACAG
s caeRem4.Crem_Contig233    82200 14 -   113162 -----------------------------------CAATAGCCTCCAAT--------------------------------------
i caeRem4.Crem_Contig233 I 13 I 10
s caePb3.Scfld02_0        3102659 34 -  4147112 -------------------------atttgatattGATTAGTTTCGATT------------TTC---------GGGCTCA-------
i caePb3.Scfld02_0       C 0 I 15
s caeJap4.Scaffold18213     86961 21 +   720316 ---------------------------CAAAAACAAATTGctcgccat---------------------------------------
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I

a score=0.000000
s ce10.chrX               2361035 55 + 17718866 GCTTGATGGAATTCCACAAGAGTATAGGAACTTTGAAAATTTTGAGCCAAAAAAA
e caePb3.Scfld02_0        3102693 15 -  4147112 I
e caeJap4.Scaffold18213     86982  0 +   720316 C
e cb4.chrX               17094738 26 - 21540570 I
e caeSp111.Scaffold576     106915 25 -   128984 I
e caeRem4.Crem_Contig233    82214 10 -   113162 I

a score=788945.000000
s ce10.chrX               2361090 935 + 17718866  
s cb4.chrX               17094764 895 - 21540570  
i cb4.chrX               I 26 I 23
s caeRem4.Crem_Contig233    82224 896 -   113162  
i caeRem4.Crem_Contig233 I 10 I 18
s caeSp111.Scaffold576     106940 910 -   128984  
i caeSp111.Scaffold576   I 25 I 21
s caePb3.Scfld02_0        3102708 916 -  4147112  
i caePb3.Scfld02_0       I 15 I 14
s caeJap4.Scaffold18213     86982 894 +   720316  
i caeJap4.Scaffold18213  C 0 C 0

a score=0.000000
s ce10.chrX               2362025 25 + 17718866 AGGGGAAGGAAAACGGGGAATAAAA
e caePb3.Scfld02_0        3103624 14 -  4147112 I
e caeJap4.Scaffold18213     87876  0 +   720316 C
e cb4.chrX               17095659 23 - 21540570 I
e caeSp111.Scaffold576     107850 21 -   128984 I
e caeRem4.Crem_Contig233    83120 18 -   113162 I

a score=37114.000000
s ce10.chrX               2362050 78 + 17718866 ------------ATAAAAATACAT---------TACTGTTTTTAATTACAGTGAGCTACATGAAAGCTATCGACGTATGGATGGGATCTTGCATGGTAA
s cb4.chrX               17095682 71 - 21540570 ---------------gaaaaaaaac--------agaatttttt-----cagtcagCTACATGAAGGCTATAGATGTTTGGATGGGATCGTGCATGGTAA
i cb4.chrX               I 23 I 747
s caeRem4.Crem_Contig233    83138 71 -   113162 ---------------TTCATTCTAC--------TCCAATGTTT-----CAGTGAGCTACATGAAAGCTATCGATGTTTGGATGGGATCATGCATGGTAA
i caeRem4.Crem_Contig233 I 18 I 33
s caeSp111.Scaffold576     107871 69 -   128984 ----------------TAATATATC--------CAATGAATTT-----CAGTGAGCTATATGAAAGCAATCGATGTCTGGATGGGATCTTGCATggta-
i caeSp111.Scaffold576   I 21 I 31
s caePb3.Scfld02_0        3103638 81 -  4147112 ------------ATTTGAACACATCATcatgaataatattttt-----cagtaagcTACATGAAAGCAATCGATGTGTGGATGGGATCTTGCATGGTA-
i caePb3.Scfld02_0       I 14 I 31
s caeJap4.Scaffold18213     87876 81 +   720316 ACATTTTCCACCATTCCAAACCATT--------ATTAATGTTC-----CAGTTAGCTACATGAAGGCTATTGATGTCTGGATGGGATCCTGTAT-----
i caeJap4.Scaffold18213  C 0 C 0

a score=0.000000
s ce10.chrX               2362128 36 + 17718866 CTACCAATAGTGAATGTTGTAATATTTCAATTTTTT
e caePb3.Scfld02_0        3103719 31 -  4147112 I
e caeJap4.Scaffold18213     87957  0 +   720316 C
e cb4.chrX               17095753 747 - 21540570 I
e caeSp111.Scaffold576     107940 31 -   128984 I
e caeRem4.Crem_Contig233    83209 33 -   113162 I

a score=268173.000000
s ce10.chrX               2362164 468 + 17718866  
s cb4.chrX               17096500 477 - 21540570  
i cb4.chrX               I 747 C 0
s caeRem4.Crem_Contig233    83242 465 -   113162  
i caeRem4.Crem_Contig233 I 33 C 0
s caeSp111.Scaffold576     107971 482 -   128984  
i caeSp111.Scaffold576   I 31 C 0
s caePb3.Scfld02_0        3103750 479 -  4147112  
i caePb3.Scfld02_0       I 31 C 0
s caeJap4.Scaffold18213     87957 451 +   720316  
i caeJap4.Scaffold18213  C 0 I 94

a score=6612.000000
s ce10.chrX               2362632 44 + 17718866 TTGCCTCACATG--------CCAGCT--AT---TTTTTTGTTTAATTTCTAACTTCT-
s cb4.chrX               17096977 55 - 21540570 ACGC--TTAATGGACTAATGCAAGCTTATCTCCTTATTTCTCTTATTTCAAGCCTCT-
i cb4.chrX               C 0 I 105
s caeRem4.Crem_Contig233    83707 50 -   113162 ATGC---AAATG--CTTACGCCAgct--attccttttttctctaatttctaAACTCC-
i caeRem4.Crem_Contig233 C 0 I 1
s caeSp111.Scaffold576     108453 42 -   128984 ATGC--TAACTG--------CCAGCT--A----TTATTTCTCTAATTTCCAAGCTCCT
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3104229 47 -  4147112 ATGCTATAACTG--------CCAGCT--ATTACTTATTTCTCTAATTT-CAAACTCCT
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     88408 94 +   720316 I

a score=9608.000000
s ce10.chrX               2362676 44 + 17718866 ACCGCATGACAGTT-TTCTTAAGTTTTCACAACAAGTCTTTTAAA
s caeRem4.Crem_Contig233    83758 44 -   113162 GAAGCATGTGAACT-CTATTTAGTTCTTGCAACTAATTTATCAGA
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576     108495 45 -   128984 TCAGCATGTAAAATCTTTTTTAGTTCATGCAACTAATCTGTTAAA
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3104276 44 -  4147112 AAAGCATGTTGACT-TTTCTCAGTTTATGCAACTAATCTGTTGaa
i caePb3.Scfld02_0       C 0 I 42
e caeJap4.Scaffold18213     88408 94 +   720316 I
e cb4.chrX               17097032 105 - 21540570 I

a score=156.000000
s ce10.chrX               2362720 3 + 17718866 ATA
s caeRem4.Crem_Contig233    83802 3 -   113162 GAA
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     108540 3 -   128984 GTA
i caeSp111.Scaffold576   C 0 I 43
e caePb3.Scfld02_0        3104320 42 -  4147112 I
e caeJap4.Scaffold18213     88408 94 +   720316 I
e cb4.chrX               17097032 105 - 21540570 I

a score=177.000000
s ce10.chrX               2362723 4 + 17718866 CGTG
s caeRem4.Crem_Contig233    83805 4 -   113162 AGTG
i caeRem4.Crem_Contig233 C 0 I 47
e caePb3.Scfld02_0        3104320 42 -  4147112 I
e caeJap4.Scaffold18213     88408 94 +   720316 I
e cb4.chrX               17097032 105 - 21540570 I
e caeSp111.Scaffold576     108543 43 -   128984 I

a score=0.000000
s ce10.chrX               2362727 1229 + 17718866  
e caePb3.Scfld02_0        3104320   42 -  4147112 I
e caeJap4.Scaffold18213     88408   94 +   720316 I
e cb4.chrX               17097032  105 - 21540570 I
e caeSp111.Scaffold576     108543   43 -   128984 I
e caeRem4.Crem_Contig233    83809   47 -   113162 I

a score=615.000000
s ce10.chrX               2363956 8 + 17718866 TGAATAAA
s caePb3.Scfld02_0        3104362 8 -  4147112 TGAATGAA
i caePb3.Scfld02_0       I 42 C 0
e caeJap4.Scaffold18213     88408 94 +   720316 I
e cb4.chrX               17097032 105 - 21540570 I
e caeSp111.Scaffold576     108543 43 -   128984 I
e caeRem4.Crem_Contig233    83809 47 -   113162 I

a score=34.000000
s ce10.chrX               2363964 9 + 17718866 CAACCCACC
s caePb3.Scfld02_0        3104370 3 -  4147112 ------ACA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     88502 9 +   720316 CAACACCCA
i caeJap4.Scaffold18213  I 94 C 0
e cb4.chrX               17097032 105 - 21540570 I
e caeSp111.Scaffold576     108543 43 -   128984 I
e caeRem4.Crem_Contig233    83809 47 -   113162 I

a score=1407.000000
s ce10.chrX               2363973 3 + 17718866 GCC
s caeSp111.Scaffold576     108586 3 -   128984 GCC
i caeSp111.Scaffold576   I 43 C 0
s caePb3.Scfld02_0        3104373 3 -  4147112 GCT
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     88511 3 +   720316 GCC
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17097032 105 - 21540570 I
e caeRem4.Crem_Contig233    83809 47 -   113162 I

a score=-2929.000000
s ce10.chrX               2363976 66 + 17718866 TGTTAA------CCTCTGTTTCTTTTGCTATCTAACATACTTC---------TTACTAGTAAATTATTCAAGAA----AACCAAA-----
s caeRem4.Crem_Contig233    83856 67 -   113162 TGATAA------CCTCTGTTGCATTTGTTCTATCAAACG-TTc---------aaatcggttttttctttgaaaa--cgtcccaat-----
i caeRem4.Crem_Contig233 I 47 C 0
s caeSp111.Scaffold576     108589 57 -   128984 TGATAA------CCTCTGTTTTCCATGCTATATCGCA---------------ACAGtattcatgttttcaaaaa-------caat-----
i caeSp111.Scaffold576   C 0 I 5
s caePb3.Scfld02_0        3104376 67 -  4147112 TGACGA------CCTCTGTTTCCCaacctatttttcatt-ttcttctaacTTTTAGTCATCatat----aaaaa-------caat-----
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213     88514 74 +   720316 TGTCGAGGAACTCCTCTGTTTTCTTTACTTCCt-------tct---------ttcttattttttcatttgaaaaaaaaaaccatttgaat
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17097032 105 - 21540570 I

a score=123540.000000
s ce10.chrX               2364042 132 + 17718866 TTTCAGAACGAGGAGGAAGGT---GTTCGGGGGGACGGAGAACAACATATTGCATTGAATATGCTAAATCCAGAGGAGCCGCGGCTACGCTCGTTGAATCAA---AACAACGATGTTACGGCGAACGGGACCAGGTGA
s cb4.chrX               17097137 133 - 21540570 tttcagaacgaaGACGAGGAG---CTTCGTGGAGACGGTGAGCAGCACATTGCACTAAACATGCTCAACCCTGAAGAGCCACGTTTGCGGTCGTTGCATCCAACCACCAATGATATTACGACAAACGGAACCAGGt--
i cb4.chrX               I 105 C 0
s caeRem4.Crem_Contig233    83923 130 -   113162 tttcagaatgaagaGGAGGGA---GTTCGCGGAGATGGAGAACAGCATATTGCATTGAATATGCTAAATCCCGAAGAGCCCCGGCTCCGCTCGTTGAACCAG---AACAACGACGTTACGGCAAACGGAACCAGgt--
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     108651 132 -   128984 tttcagaatgaagaagaaggt---gtACGTGGAGAAGGAGAGCAGCATATTGCATTGAATATGCTAAATCCCGAGGAGCCGCGTCTCCGCTCGTTAAACCCC---AACAATGATGTTACTGCAAACGGAACCAGGTGA
i caeSp111.Scaffold576   I 5 C 0
s caePb3.Scfld02_0        3104449 132 -  4147112 tttcagaatgaagaagaggga---GTACGTGGAGATGGAGAGCAGCATATTGCATTGAATATGCTAAATCCTGAGGAGCCTCGGCTTCGCTCGTTAAACCCA---AACAATGATGTTACTGCAAACGGAACCAGGTGA
i caePb3.Scfld02_0       I 6 I 29
s caeJap4.Scaffold18213     88588 135 +   720316 tttcagaacgAAGAAGACGGATCGATGCGAGCGGATGGAGAACAGCATATAGCTTTGAATATGTTAAATCCCGAGGAGCCACGTTTGCGCTCGTTAAATCAA---AACAACGATATTACGGCAAACGGAACGAggtga
i caeJap4.Scaffold18213  C 0 C 0

a score=-1080.000000
s ce10.chrX               2364174 1 + 17718866 -G
s cb4.chrX               17097270 1 - 21540570 -g
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    84053 1 -   113162 -g
i caeRem4.Crem_Contig233 C 0 C 0
s caeJap4.Scaffold18213     88723 1 +   720316 t-
i caeJap4.Scaffold18213  C 0 I 31
e caePb3.Scfld02_0        3104581 29 -  4147112 I
e caeSp111.Scaffold576     108783 0 -   128984 C

a score=-223.000000
s ce10.chrX               2364175 25 + 17718866 AGCTAGGTGCTATTGACACC-CACGA
s cb4.chrX               17097271 25 - 21540570 aatttcttggatttctcATC-CAAAT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    84054 26 -   113162 aattttttcttattctcaccacaaaa
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     108783 17 -   128984 --------CTTTTTCACATG-CAaca
i caeSp111.Scaffold576   C 0 I 8
e caePb3.Scfld02_0        3104581 29 -  4147112 I
e caeJap4.Scaffold18213     88724 31 +   720316 I

a score=-690.000000
s ce10.chrX               2364200 1 + 17718866 ---G
s cb4.chrX               17097296 3 - 21540570 -ATC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    84080 3 -   113162 -ata
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     108808 4 -   128984 aata
i caeSp111.Scaffold576   I 8 C 0
s caePb3.Scfld02_0        3104610 4 -  4147112 aaca
i caePb3.Scfld02_0       I 29 C 0
e caeJap4.Scaffold18213     88724 31 +   720316 I

a score=101635.000000
s ce10.chrX               2364201 215 + 17718866 ACGT-TGTTT--TTTGAAGATATTTCGTTGGTGCGGAAAGGATGAAGCGGAAACGGTCAAAAGCGTCGCTATCCAGACTTCGTCAACAGGTAGCGAGCATGCGTCACGCTGTGAGTTTTGCTTATCTTGCCACTTGAAACCTGCTTAAATCGGTTTTA------TTTTTTCATT--TTTTCAT-TTTGCTCAGAAGC----------------------------------------TGGCGTTTGATATTTTTGAA---------TTTCTGAGTG
s cb4.chrX               17097299 203 - 21540570 ATCT-TAACT--CTTGAAGATACTTCATGGGAGCTGAACGACTAAAGCGCAAGCGGTCCAAGACTTCGATAACCCGACTTCGCCAACAGGTAGCCAGTATGCGTCATGCCGTGAGtttcgcttttttggct-----------------tttttagtaatcagcttgtttccctt-ctttttta-tttgctCAGACGC----------------------------------------Cgcagtttgaattttattt-----------tgatgTGAA
i cb4.chrX               C 0 I 2
s caeRem4.Crem_Contig233    84083 199 -   113162 actt-tttcttacCTGAAGATACTTTGTGGGGGCCGAACGAATGAAACGCAAACGGTCGAAAGCATCACTGTCCCGACTTCGTCAGCAGGTAGCAAGCATGCGTCACGCAGTGAGTTTTGCTTTCTTGGCT-----------------TACAGTATGA------CGCTATCATC-AATCTCGT-TTTGCTCAGAAGC----------------------------------------TGGCGtttgaagtttattt-----------tgtTGAGTG
i caeRem4.Crem_Contig233 C 0 I 2
s caeSp111.Scaffold576     108812 200 -   128984 acttttttctaacgTGAAGGTACTTCGTGGGTGCGGATCGCATGAAAAGGAAACGGTCAAAGGCGTCGTTATCACGGCTCCGTCAGCAGGTAGCAAGCATGCGTCACGCAGTGAGTTTTGCTTCTTTGCC------------------TACAGTATTT------CGCTTTCATCGAATCTTAT-TTTGCTGAGAAGC----------------------------------------TGGCGattgaattcaattg-----------ttttgagTG
i caeSp111.Scaffold576   C 0 I 53
s caePb3.Scfld02_0        3104614 192 -  4147112 a----tttctaCTGT--AGGTACTTTGTCGGAGCCGAACGAATGAAGCGAAAACGGTCAAAGGCGTCGTTATCACGACTTCGTCAGCAGGTAGCAAGCATGCGTCACGCAGTGAGTTTTGCTTTATTGGC------------------TACAGTATTC------tgcttcaattttattttttatttgctcaGAAGC----------------------------------------TGGCGTTTGAACTGATTTG------------TTTGAG--
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     88755 246 +   720316 --AT-TCTTTTCCCTCAAGGTACTTTGTCGGTGCGGAGCGGATGAAACGGAAACGGTCCAAGGCGTCGTTATCTCGACTTCGTCAGCAGGTAGCAAGCATGCGTCACGCCGTGAGTTTTGCTT-TTTGGC------------------TACAGTACTC-----TTGCttgtatt--gttttta-tttgctccagagctgcaggcagtttgattcctttccttttatttgtttttcttttttctttggatttttttggaaacatttctttttGTGTG
i caeJap4.Scaffold18213  I 31 C 0

a score=-12939.000000
s ce10.chrX               2364416 60 + 17718866 TAGTGTT--------CACACATTTCACTTCTCAAGT-----GTGCGATTTTTCTTCAAAACGTGAAAATTTTG
s cb4.chrX               17097504 43 - 21540570 ---------------CATACTTTAAAGCTTTAATTC----------ATATTTCC----AACT-GAAAAGAATG
i cb4.chrX               I 2 I 1
s caeRem4.Crem_Contig233    84284 53 -   113162 ---------------TACACAGAACACGTTTCATTTCAAATCAATGATCTCTCC----AATG-AAAAATCCGG
i caeRem4.Crem_Contig233 I 2 I 1
s caePb3.Scfld02_0        3104806 52 -  4147112 -AGTGTTCacaaaaacacacaaaaaagtatatGGAT----------GAGTTTCT----AATG-AATAA-----
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     89001 61 +   720316 -------AAATAAAGCACTTCTAAAAGTTCAGATTCGTTATCAGAAATATTCAT----taat-aataaattta
i caeJap4.Scaffold18213  C 0 I 3
e caeSp111.Scaffold576     109012 53 -   128984 I

a score=211428.000000
s ce10.chrX               2364476 244 + 17718866 TTTCAGACGATTGACGTCTCTCGTCGTGCTTTTAACTGGACACGCGCCCTTCGAAATCTACGCGGACGGCGAGTGGCTCAACGCATTGACGAGCGGTGTCGTATTGTATTCCCGATGATATTCTTGCTATTCAATGTGGCCTACTGGAGCTTCTACCTTGTCTTCAACT--AGCATTCTC------TTATT---CACTGTGATTGATCTC-TACGTTGTGCATGTC-------------------------CTCAAATCTTTTCT-TGTTTTTTTTCTCATT
s cb4.chrX               17097548 275 - 21540570 TTTCAGACCGCCGATGTTTCCCGTCGCGCGTTCAAATGGACTCGTGCCGTTCGAAAACTCCACGGTCACCGCGTCGCTACAAAAATCGACGAGCGATGTCGTATCGTGTTTCCGATGGTGTTCATCCTGTTCAACATCGCCTACTGGAGCTTCTATCTTGTATTCAATTGAAacattctctctcttttttt---cactgtGATTGATCTCGTACGTTGTGCATGTCCCTTCCACTCTTCCTTCTCTCCTTCCCAGAATCTTCTTCATGTTTT----TTGTCT
i cb4.chrX               I 1 C 0
s caeRem4.Crem_Contig233    84338 242 -   113162 TTCCAGACTGTTGATGTTTCTCGACGTGCTTTCAACTGGACTCGTGCCCTCCGAAATCTTCGTGGTCGCCGTGTTGCCCAAAGAATTGACGAACGGTGTCGAATCGTGTTCCCAATGATTTTCTTCCTGTTCAACGTCGCCTACTGGAGCTTCTACCTTGTCTTCAACT--AACATTCTC------TTATT---CACTGTGATTGATCTCGTACGTTGTGCATGTC------------------------TACCGAATTTTCACC-CGTTTC----CTCTCA
i caeRem4.Crem_Contig233 I 1 C 0
s caeSp111.Scaffold576     109065 248 -   128984 TTTTAGACTGTTGATGTGTCTCGTCGAGCTTTCAATTGGACTCGTGCACTCCGAAACCTTCGAGGTCGTCGAGTCGCTCAACGGATCGACGAGAGGTGTCGTATTGTGTTCCCGATGATTTTCTTCCTGTTCAACATCGCCTACTGGAGCTTCTACCTTGTTTTCAACT--AACATTCTC------TTATA---CACTGTGATTGATCTCGTACGTTGTGCATGTCTC-----------------------CCCGAATCTTCttcatgtttcattttccaca
i caeSp111.Scaffold576   I 53 C 0
s caePb3.Scfld02_0        3104858 250 -  4147112 TTCCAGACCGTTGATGTTTCCCGTCGTGCTTTCAACTGGACTCGTGCTCTCCGCAATCTTCGTGGTCGTCGTGTCGCTCAACGAATTGATGAACGGTGTCGTATTGTGTTCCCAAtgattttcttcctcttcaacaTCGCCTACTGGAGCTTCTACcttgttttcaact--aacaTTCTC------TTATT---CACTGTGATTGATCTCGTACGTTGTGCATGTCCCT---------------------TCTCGAATCTTCTTCATGTTTCAATTCTCACA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213     89065 253 +   720316 ttttagacaATGGACGTATCGCGACGTGCCTTCAACTGGACACGTGCTCTCAGAAATCTTCGTGGCCGCCGAGTTGCTCAGAGAATCGACGAACGGTGCCGAATTGTGTTCCCAATGGTGTTCTTCTTGTTCAACATTGTTTATTGGAGCTTTTATCTTGTATTCAACT--AACATTCTC------TTATTTACCACTGTGATTGATCTCGTACAATGTGCATGTCGCC---------------------TCACGAATCCCCTTGAAATTCTTTGTGTCACT
i caeJap4.Scaffold18213  I 3 I 12210

a score=-1012.000000
s ce10.chrX               2364720 83 + 17718866 TTTCTTGATTCAGGTTACCAACTCGCTAAC-TTTTCAACATTTACGATGA---------TGATAT----TAGCCATTTTAA---TTTGAAAATAAATTAT
s cb4.chrX               17097823 83 - 21540570 CTCACTACTT---------------TACAAGTTTGTCCTATTTATGATCAGAAAACTATTGAATTCT--CTGATAttgaatctttttgaaaataaattat
i cb4.chrX               C 0 I 15047
s caeRem4.Crem_Contig233    84580 67 -   113162 TTtgctaatt---------------------ttttcattcattatgATTA-------CTTGAATTGT--TAGCTattgg---ttttctgaaataaattat
i caeRem4.Crem_Contig233 C 0 C 0
s caeSp111.Scaffold576     109313 76 -   128984 tttgattact---------------tttat-tttccaattcgcaaaacaa-------caaaaaatgtattcattCTCCGGA-TTTTCgaatataaattat
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3105108 77 -  4147112 TTCGCTAACT---------------TTTTC-ATTGTGTTTCTTATGAAAA-------ACTGATGTATAATACTCATTTGAACTTCTcggaaataaattat
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213     89318 12210 +   720316 I

a score=546.000000
s ce10.chrX               2364803 1 + 17718866 T
s caeRem4.Crem_Contig233    84647 1 -   113162 t
i caeRem4.Crem_Contig233 C 0 I 11446
s caeSp111.Scaffold576     109389 1 -   128984 t
i caeSp111.Scaffold576   C 0 C 0
s caePb3.Scfld02_0        3105185 1 -  4147112 t
i caePb3.Scfld02_0       C 0 I 10453
e caeJap4.Scaffold18213     89318 12210 +   720316 I
e cb4.chrX               17097906 15047 - 21540570 I

a score=345.000000
s ce10.chrX               2364804 54 + 17718866 ATGTATTAAGAGTAAGAGAGTCACATTG------TATTTTTATTTT----ATTTCAAAAATGGA
s caeSp111.Scaffold576     109390 64 -   128984 ttatgaGATAACTAccagagttgtatggaatgaacattttcagttttgaaatttgaaatttgga
i caeSp111.Scaffold576   C 0 N 0
e caePb3.Scfld02_0        3105186 10453 -  4147112 I
e caeJap4.Scaffold18213     89318 12210 +   720316 I
e cb4.chrX               17097906 15047 - 21540570 I
e caeRem4.Crem_Contig233    84648 11446 -   113162 I

a score=0.000000
s ce10.chrX               2364858 3221 + 17718866  
e caePb3.Scfld02_0        3105186 10453 -  4147112 I
e caeJap4.Scaffold18213     89318 12210 +   720316 I
e cb4.chrX               17097906 15047 - 21540570 I
e caeRem4.Crem_Contig233    84648 11446 -   113162 I

a score=195.000000
s ce10.chrX               2368079 5 + 17718866 ATCGT
s caeRem4.Crem_Contig233    96094 5 -   113162 ATCCT
i caeRem4.Crem_Contig233 I 11446 C 0
s caeJap4.Scaffold18213    101528 5 +   720316 ACCAG
i caeJap4.Scaffold18213  I 12210 C 0
e caePb3.Scfld02_0        3105186 10453 -  4147112 I
e cb4.chrX               17097906 15047 - 21540570 I

a score=-523.000000
s ce10.chrX               2368084 30 + 17718866 ATTTGAAATATCTTCCGAGCGTGCCCA-------GCT-
s caeRem4.Crem_Contig233    96099 23 -   113162 ATTTGAAGTGT-------GTCTTCTCC-------ATT-
i caeRem4.Crem_Contig233 C 0 I 3
s caePb3.Scfld02_0        3115639 32 -  4147112 ATTTGAAATATC-----ATCCTTCTCCGAAGTGTGTC-
i caePb3.Scfld02_0       I 10453 I 2
s caeJap4.Scaffold18213    101533 25 +   720316 ATTCGGAATATC------TTCTTTTTC-------ACTA
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17097906 15047 - 21540570 I

a score=86879.000000
s ce10.chrX               2368114 435 + 17718866  
s cb4.chrX               17112953 409 - 21540570  
i cb4.chrX               I 15047 C 0
s caeRem4.Crem_Contig233    96125 458 -   113162  
i caeRem4.Crem_Contig233 I 3 C 0
s caePb3.Scfld02_0        3115673 457 -  4147112  
i caePb3.Scfld02_0       I 2 C 0
s caeJap4.Scaffold18213    101558 473 +   720316  
i caeJap4.Scaffold18213  C 0 I 43

a score=-7915.000000
s ce10.chrX               2368549 31 + 17718866 TGGCGA-----------------ACGCTGCATT----TTTC--------CATTCCAGAGA---------
s cb4.chrX               17113362 69 - 21540570 TgccaacccccccccccccctctccaAAGCACTTTCCTTACGCCCCCAACGTTTCAGAGACGTAGAAAC
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233    96583 45 -   113162 TGCTAA-----------------CGAAAGTACTCGCATTTC-CCTCCCACCTCCCATTGCCTT------
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3116130 31 -  4147112 TGCCAC-------------------GGTGTACTTGCCCCAC---TGCGATTTC----------------
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213    102031 43 +   720316 I

a score=2771.000000
s ce10.chrX               2368580 15 + 17718866 GTAGAGAGTGTGCGG--
s cb4.chrX               17113431 15 - 21540570 GCAGGGAGAGAGTGC--
i cb4.chrX               C 0 I 66
s caeRem4.Crem_Contig233    96628 15 -   113162 TCAGAGAGAGTGCGc--
i caeRem4.Crem_Contig233 C 0 I 4
s caePb3.Scfld02_0        3116161 10 -  4147112 -----GAGAGAGCGA--
i caePb3.Scfld02_0       C 0 I 6
s caeJap4.Scaffold18213    102074 15 +   720316 --GGAGAGAGggtgtag
i caeJap4.Scaffold18213  I 43 C 0

a score=-8691.000000
s ce10.chrX               2368595 69 + 17718866 GTTGAAGAGAGACAGACGTCACTGCGCTCTTacacacacacacacacacacacaca------cacacacacacac
s caeRem4.Crem_Contig233    96647 21 -   113162 --------------------------------------------gagaaaaagaga------gattcgTCC----
i caeRem4.Crem_Contig233 I 4 C 0
s caePb3.Scfld02_0        3116177 48 -  4147112 ---AAAAAGGGTTAGA-----------------GCGCGCACAC-AAGAGAAACAGA------GACCCGTCCACGC
i caePb3.Scfld02_0       I 6 C 0
s caeJap4.Scaffold18213    102089 25 +   720316 ---------------------------------------------agaaaaaagcaacgCGCGACGCCCC-----
i caeJap4.Scaffold18213  C 0 C 0
e cb4.chrX               17113446 66 - 21540570 I

a score=74486.000000
s ce10.chrX               2368664 454 + 17718866  
s cb4.chrX               17113512 453 - 21540570  
i cb4.chrX               I 66 C 0
s caeRem4.Crem_Contig233    96668 477 -   113162  
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3116225 451 -  4147112  
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213    102114 487 +   720316  
i caeJap4.Scaffold18213  C 0 I 1071

a score=546.000000
s ce10.chrX               2369118 1 + 17718866 T
s cb4.chrX               17113965 1 - 21540570 T
i cb4.chrX               C 0 I 6529
s caeRem4.Crem_Contig233    97145 1 -   113162 T
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3116676 1 -  4147112 T
i caePb3.Scfld02_0       C 0 I 1108
e caeJap4.Scaffold18213    102601 1071 +   720316 I

a score=18.000000
s ce10.chrX               2369119 203 + 17718866 TT-----TTCAACCAAATGCTAT----------------GGCCTTTTTTTATT-CTGAAACTTTGTAAAAATATTAGGGAAAAATCGTTTATTCAAATATAAAAATCAAAAGGAAGCCGAACCGTTATCAGTCACAATTCCATATACATTCAACAATAAACATTTGTGAGTC---AATACTCACAAAGAGAATCAATAAATTGTTATG--TCCAAGCAAACCGTCACCAT
s caeRem4.Crem_Contig233    97146 208 -   113162 GTACACCTTCAAGCtcttgtcatttttgttgaccaactcaacattttttaattactggttttcagaagaagcatttcagaaaaa----------atacaccaaatttgaaaaaaaacagaagaat------tcATAA------AgaaattcagtcaaaaactttcaagatTCTTGAGTATCCGGAATTAAAACCAATGGAATGCTGAGATGCTATATAAAACGGCACCGT
i caeRem4.Crem_Contig233 C 0 I 552
e caePb3.Scfld02_0        3116677 1108 -  4147112 I
e caeJap4.Scaffold18213    102601 1071 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=0.000000
s ce10.chrX               2369322 91 + 17718866 TGTTGCCTTTTTGAACCGTGTGCAAAACGAATTTTTCAATGTACAATGTATCGATTTTTTCATTTTTTCGGACAGGTTAATGTGCATGACG
e caePb3.Scfld02_0        3116677 1108 -  4147112 I
e caeJap4.Scaffold18213    102601 1071 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I
e caeRem4.Crem_Contig233    97354 552 -   113162 I

a score=971.000000
s ce10.chrX               2369413 76 + 17718866 TGAAACAAAAGAAA-AACTATGACACAAAGTGGTGTCTCTGAGAACTGTGCAGGTGTGGTGTCTTACACAAAACTGA
s caeJap4.Scaffold18213    103672 55 +   720316 TGAAACAAAGGATATGACTATGACTCAAGG----GTGTCTGGGAACACTGCA---------CCCTACA---------
i caeJap4.Scaffold18213  I 1071 C 0
e caePb3.Scfld02_0        3116677 1108 -  4147112 I
e cb4.chrX               17113966 6529 - 21540570 I
e caeRem4.Crem_Contig233    97354 552 -   113162 I

a score=-399.000000
s ce10.chrX               2369489 16 + 17718866 TGACTGTACAAATGTT
s caeRem4.Crem_Contig233    97906 16 -   113162 TGAATACACCTGTAGT
i caeRem4.Crem_Contig233 I 552 C 0
s caeJap4.Scaffold18213    103727 10 +   720316 -AATTGTACAT-----
i caeJap4.Scaffold18213  C 0 C 0
e caePb3.Scfld02_0        3116677 1108 -  4147112 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=11238.000000
s ce10.chrX               2369505 45 + 17718866 AGTGCAAATACGTAAAAAGT---GC----AGCTCAGCGGGAAGGTGAGAAAA
s caeRem4.Crem_Contig233    97922 49 -   113162 AGTGCAAATACTGAATGAGA---ACGTTTAGCTCAGCAGGTGGGTGAGAAAA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3117785 52 -  4147112 AGTGCAAATATCCACTAAGAAGTACTCTTAACTCTGCGGGGTGGTGAGAAAA
i caePb3.Scfld02_0       I 1108 C 0
s caeJap4.Scaffold18213    103737 47 +   720316 AGTGCAAACACTTTTCTAGA---GG--TTAGCTCAGCGGGAGGGTGAGAAAA
i caeJap4.Scaffold18213  C 0 I 5824
e cb4.chrX               17113966 6529 - 21540570 I

a score=853.000000
s ce10.chrX               2369550 12 + 17718866 CCGATCGCACTT
s caeRem4.Crem_Contig233    97971 12 -   113162 GATATCGCACTA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3117837 12 -  4147112 GCGATCTCAGTT
i caePb3.Scfld02_0       C 0 I 2986
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=163.000000
s ce10.chrX               2369562 13 + 17718866 AAGAATAACCATT
s caeRem4.Crem_Contig233    97983 13 -   113162 ATGGTTGGTCACT
i caeRem4.Crem_Contig233 C 0 I 447
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=0.000000
s ce10.chrX               2369575 485 + 17718866 CAGATTACAATAATATGGTGGGGTTTTGTAGTGCAAGTGGTGATCTATGACAATTTGTGAAAATCTATGTATCGGGTAAGAACTTGTGTAGAATATCTGCCCAAAAATGTTAATCTTTTTGAACATTTCGAGGGCCCTTTTTATCCATATTAGGCTCAAGATTAGTGTTTTGTTTAAGCCTAAAAATACAAATCAATTTGAAATTTCAATTAGATAGTCattttaaaaataattttttatagattttttGGCCCAGAAAATAAGTTTCTGTTTTTAAAATTTTGTTTGAACATCTACCTGAGCATTACTGAAATATTCAATTAACTCGAGATGCTGAAAAGTGCCGGTGCGCGTAATTTTTTTGTATTCATTGAATTCTGCCATTTTGAATCATCAATTGAACGTAGACGACGATATCAGAAAATTACAAAAATTCTCCAAAAACTGTTGACCATAATTGAAAATCAGATTGGTAATTCCGTCTT
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I
e caeRem4.Crem_Contig233    97996 447 -   113162 I

a score=3925.000000
s ce10.chrX               2370060 140 + 17718866 GGCATGTTCATACCACCAGTCAGAAAAGTGTCACTAGAGAAAG------TGAAAAATGAAACACATTTATCCTCATTTTTCGAGATTTTTGTTCGCAGACTGTCGCCAGTTGAATGATTGGCA-AAAGATCTGATGCACTT-GAGAAA
s caeRem4.Crem_Contig233    98443 140 -   113162 GACGTTTTCATGCTGATAGACAG--------CACCTGAGatagacattttgaaaaatgagacacATTTTCTTTCACATTTTAAAATCACTTCTCAGTGGTTGTCGCCAGTAAAATGATTGACAGAGAAATTTAGAGTACTTCGAGAAA
i caeRem4.Crem_Contig233 I 447 I 662
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=0.000000
s ce10.chrX               2370200 616 + 17718866  
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I
e caeRem4.Crem_Contig233    98583 662 -   113162 I

a score=3708.000000
s ce10.chrX               2370816 113 + 17718866 AAAACGTGGTACCAGCCTATTGATGCAATAATTCTTATCAGTGAAAATTTACTTGATAACTAAAATTATTAGTTTTGATTATACTTGGATTTCAACGAAAAACG--GAACAGAGT
s caeRem4.Crem_Contig233    99245 106 -   113162 AAAACGTGGTTTAACCATTTTCTTGTAATCGTGCTTATCAGTGAAA-----TTTGATACTTCAAATTAATAGTTTTGATCATA----GTTTTCCTTGAAAACCGGCGAACAGTGT
i caeRem4.Crem_Contig233 I 662 I 1097
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=0.000000
s ce10.chrX               2370929 1209 + 17718866  
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I
e caeRem4.Crem_Contig233    99351 1097 -   113162 I

a score=60.000000
s ce10.chrX               2372138 2 + 17718866 TT
s caeRem4.Crem_Contig233   100448 2 -   113162 TC
i caeRem4.Crem_Contig233 I 1097 C 0
e caePb3.Scfld02_0        3117849 2986 -  4147112 I
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=2808.000000
s ce10.chrX               2372140 41 + 17718866 GTTCAATCCAGAGGTCTCACACACCGATTTTACGCTACCTT
s caeRem4.Crem_Contig233   100450 37 -   113162 ATTCAATCCAGAAGTTT----CTTTGTCTCAACCGTAACTA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3120835 37 -  4147112 GCCCAATCCAGAAGTTT----CGCCGTTTCAAGCCGAGTTA
i caePb3.Scfld02_0       I 2986 C 0
e caeJap4.Scaffold18213    103784 5824 +   720316 I
e cb4.chrX               17113966 6529 - 21540570 I

a score=738.000000
s ce10.chrX               2372181 3 + 17718866 CTG
s caeRem4.Crem_Contig233   100487 3 -   113162 CCT
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3120872 3 -  4147112 CTG
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213    109608 3 +   720316 CTG
i caeJap4.Scaffold18213  I 5824 C 0
e cb4.chrX               17113966 6529 - 21540570 I

a score=18522.000000
s ce10.chrX               2372184 207 + 17718866 TGGTCACGCCCTTTTTTAGTATAAAA-AGCTGCCAACGCAAAAAAGAAAATCATTTACTAAACGC--CGACCTTCTCCC-----CACAATGTGCGCC-GGTGTCTCTCTGCACACTCCACATTCTCTG----CTGGTAAATTGA--------CTGCGGC-GGTGGCGACCATGTA-TCTTATCATATCGAATCAGT-TTTGCTCCTCAGTTGGGCAACATA--CTGCCTCTCA
s cb4.chrX               17120495 202 - 21540570 TGGTCACGCCTTTTATGACTATAAAACTGTTGTCGGAGCAGGAATAAAAGTCAGTTTCTGTGCgtc-ctcttctcttttccttaCATGCTGTGCTTCTCGCG---CTCTGCAC-CTCCTCTCATTCTCTTCACTGATAA--CGGTGGTACTGCTGCGGCTGGTGGTGGCATATCACTCAAACCAGTGTG----------------------AGG-AGCACAC-ACTTGCTCCA
i cb4.chrX               I 6529 C 0
s caeRem4.Crem_Contig233   100490 209 -   113162 TGGTCACGCCCTCATTGAGTATAAAATAGCTGTTGAAGCAGAAATGGAAATCATTTTCGATGAGT--CGGTTTTCTCCCTCTAACACGTCGTGCCTC-AACG---CCTAGCGC-CTCCTCATACTCTT----CTGATAA--TGG----GATGCCGCGGCTAGTGGTGGCACACTG-TCTTATCAATGTG--TTAGT-ACTGCTCGTCGGTATGG-AGCACA--ATTCATTTCT
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3120875 214 -  4147112 TGGTCACGCCCTCTATGAGTATAAAATAGCTGTTTGAG-ACAACAGAGAATCATTTTCGATATGT--CGGCCTCCTCCTCTATTTGCACCGTCCCTC-GCTA---CGCTGCTC-CTTCTCTATCTCTA----CTGATAA--TGAAGTCGCAGCGGCGGC-GGTGGTGGCAGCCTA-TCTTATCAATCTG--TCAGTCCCTGCTCTTCATTTTAG-AGCACGCTGTCTCTTTCC
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213    109611 199 +   720316 TGGTCACGCCCTTTTCGGGTATAAAATGCCT--CtaagcagaaacaaaaatcatTTT-GAAGCGTCGCGTCGCCCACCGCCTAACTCGGCCTGTCTC-TCTT---CTTTCT---CGCCGCATTTGTTA----CTGATAA--TGC---GGATACTCCGGC----------ACCGTA-TCTTATCAATGTCACTTCTC-TCTCTTTCCCATTTTGA-CATTGG--TTGCCTTTCT
i caeJap4.Scaffold18213  C 0 I 72

a score=-3990.000000
s ce10.chrX               2372391 67 + 17718866 ATGTACACCA--CCATTCGATTGATAATATTATTCAATGCGGTTTTTTTTTCTACTTTCTTGTTGCTTT
s cb4.chrX               17120697 49 - 21540570 ACAT------ATTCATTTGTCTA---CTAGTACTatattcctgaattttt-----------tctgcGAG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233   100699 63 -   113162 ACACTATGCAGTCGAATTGTCTGACCCTACCATtgaatttccttatttttgacCA------CATGCATT
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3121089 64 -  4147112 ATATGCACCACTCCGTTTGGTCGTCGTTATTGTTCGGCTCTGCTATTTTTGTTAA-----TCCTGCCTC
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213    109810 72 +   720316 I

a score=37651.000000
s ce10.chrX               2372458 76 + 17718866 GAAGAATTGCAGTCGGTTGCAAGCTTAAATACAAATCCGAA--------TTGTTATTAAAGCTACCAACCGGCTTCAAGTCTGA
s cb4.chrX               17120746 79 - 21540570 ACCGAATTGCAGTCGGTTGCAAGCTTCAATACA-----GACAATGGTTCTTGATATTAAAGCTACCAACCGCCTTCAAATCGTG
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233   100762 79 -   113162 GATGAGTTGAAGTCGGTTATAAGCTTAAATACA-----GAACATACCCGTTGTTATTAAAGCTACCAACCGACTTCAGATCATA
i caeRem4.Crem_Contig233 C 0 C 0
s caePb3.Scfld02_0        3121153 77 -  4147112 GACGAGTTGAGGTCGGTTGCAAGCTTCAATACATTTATGAAA-------TTGATATTAAAGCTACCAACCGGCTTCAAATCGAA
i caePb3.Scfld02_0       C 0 C 0
s caeJap4.Scaffold18213    109882 73 +   720316 ATGGTCTTGCAGTCGGTTGCAAGCTTAAATACA-----GACAA------TAGTTATTAAAGCTACCAACCGGCTCCAAGACTGA
i caeJap4.Scaffold18213  I 72 I 16858

a score=155.000000
s ce10.chrX               2372534 26 + 17718866 AAGAGC--AGTTGAAAA-------AAGGTAAGCCT
s cb4.chrX               17120825 33 - 21540570 CATCGC--GATTTGGCAAAACAACAAGGTAAGCTT
i cb4.chrX               C 0 C 0
s caeRem4.Crem_Contig233   100841 28 -   113162 CTTTGCATACTTTTACA-------AAGGTAAGTCT
i caeRem4.Crem_Contig233 C 0 N 0
s caePb3.Scfld02_0        3121230 30 -  4147112 AAGTGCGTGTTTGTTcaaa-----gaagtgagttt
i caePb3.Scfld02_0       C 0 C 0
e caeJap4.Scaffold18213    109955 16858 +   720316 I

a score=-132.000000
s ce10.chrX              2372560 4 + 17718866 GTTT-
s cb4.chrX              17120858 4 - 21540570 attt-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3121260 4 -  4147112 -tttt
i caePb3.Scfld02_0      C 0 I 13687
e caeJap4.Scaffold18213   109955 16858 +   720316 I

a score=242.000000
s ce10.chrX              2372564 4 + 17718866 AAAT
s cb4.chrX              17120862 4 - 21540570 gaat
i cb4.chrX              C 0 I 16570
e caePb3.Scfld02_0       3121264 13687 -  4147112 I
e caeJap4.Scaffold18213   109955 16858 +   720316 I

a score=0.000000
s ce10.chrX              2372568 12894 + 17718866  
e caePb3.Scfld02_0       3121264 13687 -  4147112 I
e caeJap4.Scaffold18213   109955 16858 +   720316 I
e cb4.chrX              17120866 16570 - 21540570 I

a score=927.000000
s ce10.chrX              2385462 34 + 17718866 GAATCAAATGTTGTTTTATCCAATTAGCATTGAT
s caeJap4.Scaffold18213   126813 34 +   720316 GAAACAGATGTTTTATAAAACAAATGATACCGAT
i caeJap4.Scaffold18213 I 16858 C 0
e caePb3.Scfld02_0       3121264 13687 -  4147112 I
e cb4.chrX              17120866 16570 - 21540570 I

a score=3044.000000
s ce10.chrX              2385496 48 + 17718866 AACGAATGATT---------GAAAAGCATACCAAACATGACTTTGTCACATGTGTCC
s caeSp111.Scaffold582    406364 40 -   484378 AACCAATGATT---------AGAAATCACACAAAACTAGAATTTG--------ATCC
i caeSp111.Scaffold582  N 0 I 1
s caePb3.Scfld02_0       3134951 39 -  4147112 AACCAATGATT----------GAAACCATgagaaacttgaatttt--------atCC
i caePb3.Scfld02_0      I 13687 I 1
s caeJap4.Scaffold18213   126847 42 +   720316 -------GATTACCGGAGGAAAAAATCACG-GATATTAAAGTTTG-------AATCC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17120866 16570 - 21540570 I

a score=7526.000000
s ce10.chrX              2385544 50 + 17718866 -AGAAAATGATTGATCAGAA-ATTATGAGACACTTCTTTGGA--------AAAGCTAGGC
s cb4.chrX              17137436 57 - 21540570 -AGACAAAGATTGATTAGAA-GTGATTAGA-ACAGATTTctagaaaagggaaaaaaacga
i cb4.chrX              I 16570 I 15
s caeSp111.Scaffold582    406405 49 -   484378 -GAAGGATGattgattaaaa-atgattaga-aCTTTCGGCTA--------AAAGCAACGA
i caeSp111.Scaffold582  I 1 I 5
s caePb3.Scfld02_0       3134991 49 -  4147112 -CGAGGATGATTGATTAAAA-ATGATTAGA-ACTTATTGTTA--------AAAGCAGCGA
i caePb3.Scfld02_0      I 1 I 5
s caeJap4.Scaffold18213   126889 48 +   720316 ATGAAGATTACTGATTGCAATACAATTGAA-GTTCCTAGAAA--------GAAGATA---
i caeJap4.Scaffold18213 C 0 C 0

a score=218935.000000
s ce10.chrX              2385594 359 + 17718866 CTCAAAACATAAAAGTGAATAGATGAGTAATGAGTAATGGTTG--TTCTTTCCCGCCCTAGTATTTTGCTTCTCTCATTTCTGCCCGATTTCTCCccgctactgctgctgctgtcgtcgtcgacgccgccgccgccgtcaccaccgtcTAACCACAC-ATTTCGAC--AAAGGCGC--CGAGTGTATCACGCAG--CCGGATAGCGGCTGATAATATGTACAGTCTTATTGTCCCACCTACCCGCTTCATCATACTT---ATTGCATGTATTCTCGCATCTATCCAGCTTCTTGTACAATGCTCTCCAATATCAACGTCC---TACAGAACTCTTCTATACGGGGAAAAGCTGAAAGGCTTTTTGACGGTCAGT--------------------------
s cb4.chrX              17137508 355 - 21540570 CCAAAAACATTAAAGTGAATAGATGAGTAATGAGTAATGATTG--TTCTTTCCCGCCCCAGTatttcacttcttcttcttcttcttc---tctcatttcttctcatttgattcttctcGTC----------CCCCCGTCGGCGTCGTCCAACCCCATACTTTTGACAAAAAGGCGCCGCGAGTGAATCA-GCAGGCCGGGATCGCGGCTGATAATATGTACAGTGTCATCGCTTATCCTAAACCGTTCGTTCAttccctatttttttgtaCTATTATCTTTTCA---TTTATACATCAATGCGTTCCATTCTCCACATCATCATATAGGACTTTATTGTATGGCGAGAAGTTGAAGGGTTTTTTGACGGTTAgt--------------------------
i cb4.chrX              I 15 I 15
s caeRem4.Crem_Contig15     6063 343 -  1794024 CCCAAAACAATAAAGTGAATAGATGAGTAATGAGTAATGGTTG--TTCTTTCCCGCCCTAgtatttcttctctttcgttTCTGCCTG---TCCGACGTTTTCTCCTGCtatcgtcgtcgt---------------cgtcgtcaccGTCTAACCACAC-TTTTTGAC--AAAGGCGC--CGAGTGTATCA-GCAG--CCGGATCGCGGCTGATAATATGTATAGTGTCATTGCCTCTCTTAATACATTCACCACTTCTATTATCCTAATTATTATCACCTGTTCC---TGGGTAGTGCAATCCGTTCCTGTATCCACTTCTTCCTACAGAACTCTTTTATATGGCGAAAAACTGAAAGGTTTTCTGACGGTTggt--------------------------
i caeRem4.Crem_Contig15 N 0 I 8
s caeSp111.Scaffold582    406459 332 -   484378 CCAAAAACATTAAA-TGAATAGATGAGTAATGAGTAATGGTTG--TTCTTTCCCGCCCCAGTATTTCgcttctctcatttctgCCTG---TCCGACGATTTCTCTC-------CCACTGT---------------CGCCGTCACCGTCTAACCACAC-ATTTCGAC--AAAGGCGC--CGAGTGTATCA-GCAG--CCGGATCGCGGCTGATAATATGTATAGTGTCATTGCCAATTTTAAACAGTTCATTAACCCT---ATTCTATtcattcttttattctcC---AGCCTTGTTCAATGTGGATTCGTGTCGACTTCTTCATACCGGACGCTATTATACGGCGAAAAGCTGAAAGGTTTTCTGACGGTTAGT--------------------------
i caeSp111.Scaffold582  I 5 I 1
s caePb3.Scfld02_0       3135045 337 -  4147112 CCAAAAACATTAAAGTGAATAGATGAGTAATGAGTAATGGTTG--TTCTTTCCCGCCCCAGTATTTCGCTTCTCTCATTTCTGCCTG---TCCGACGTTTTCTCCCGC---TGTCGCTGT---------------CGCCGTCACCGTCTAACCACAC-ATTTTGAC--AAAGGCGC--CGAGTGTATCA-GCAG--CCGGATCGCGGCTGATAATATGTATAGTGTCATTGCCTATTCTAAGAAATTCATTAACCCC---TCTTTATGCATTATCCTGTTATTC---ACTTATGTTCAATGTGTACCCATATCTACCTCCTCATATAGAACACTTCTATATGGGGAGAAGCTGAAAGGCTTTCTCACGGTTAGT--------------------------
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold18213   126937 342 +   720316 CCGAAAACATTAAAGGAAATAGATGAGTAATGAGtaatggttgttttttttcccgcccCAGTATTTCGCTTCTCTCATTTCTGCCCG---TCCGACGATTTCTCCCGCTGTCGTCGTCGTTGTGT----------TGCCGCCACCGTCTAACCACAC-ATTTCGAC---AAGGCGC--CGAGTGTATCA-GCAG--CCGGATAGCTGCTGATAATATGTACAGCCT------------------ATTCGT----------ATATCTGGTAT--TTCTACTTTTC---TGCCAGACTCGGTGCGATTCAA---CGCCGTCCGTTTACCGAACGTTATTGTACGGCGAGAAATTAAAAGGCTTTCTAACGGTATgcttgtttttcttcttttcttttttaga
i caeJap4.Scaffold18213 C 0 C 0

a score=-62.000000
s ce10.chrX              2385953 31 + 17718866 ATCGTATTAGTGTCGCCTTGTGTGTGAGGAA
s caeRem4.Crem_Contig15     6414 30 -  1794024 tctcatttggtGTC-ATTATTGTTAGAGGAA
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    406792 25 -   484378 AATTTCTTGATA------TGTGCGTgaggaa
i caeSp111.Scaffold582  I 1 I 1
s caePb3.Scfld02_0       3135383 30 -  4147112 GACTTTTTGGTGTC-CATTTTGCGGGAGGAG
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold18213   127279 26 +   720316 aCCGTGTTGTCGCT-----TTATTAGAAAAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17137863 15 - 21540570 I

a score=75137.000000
s ce10.chrX              2385984 138 + 17718866 GTTGTCTTATCTTGCGTGTGGGGTGACTGTGCGAGTTGATTCGATTCAGTTGGGGTCGAAATGG--AAAGAAAAAAAAAAGATCG--AAGTGTAAATCATCCCTT-TTATTCTAGTGTTTCTTCAATCCTTCCAAGGTTGTTT
s cb4.chrX              17137878 101 - 21540570 aCTGTGTTATCTTGTG---TAGGTGATAGTGCGAGTTGATTCGATT------GGGTCG------------------AAACTATAGGGAAGTGTAAATCGTTC-------TTTCAGTGGTTC--------TCCCAAGGTTATTT
i cb4.chrX              I 15 I 97
s caeRem4.Crem_Contig15     6444 134 -  1794024 GTTGCCTTATCTTGCG---GGGGTGATAGTGCGAGTTGATTCGATTCAG-TGGGGtcgaaat-----gaagagaaaaaactatcGTAGTGTGTAAATCATCCCTTCGTATTTCAGtgtttcttctattttcccAAGGTTATTT
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    406818 130 -   484378 ttttttttgtattctg---gGGGTGACAGTGCGGGTTGATTTGATTCAG-TGGGgtcgaa-------agagaaaaaaaacggtaG--AAGTGTAAATCATCCCTTCTTATCTTAGTGTTTCTGCGGTCTTCACAAGGTTGTTT
i caeSp111.Scaffold582  I 1 I 170
s caePb3.Scfld02_0       3135416 132 -  4147112 GTTTTCTTATCTTCTG---GGGGTGATAGTGCGAGTTAATTTGATTCAG-TGGGGTCgaatc-----aaagagaaaaagcgGTTG--AAGTGTAAATCATCCCTTCTTACTTCAGTGTTTCTACTATCTTCCCAAggttgttt
i caePb3.Scfld02_0      I 3 I 8
s caeJap4.Scaffold18213   127305 133 +   720316 GCTATGTTATCTTGC----CGGGTGATAGTGCGAGTTGATTCGATTTAG-TTGAATCGACCcgaataaaagagaaaaagcgAGCGC-AAGTGTAAATCATCCCTTTCT-TTTTAGCGTTTCCCTTATCGCCTCAAGGTTG---
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2386122 8 + 17718866 CCAATTTC
e caePb3.Scfld02_0       3135548 8 -  4147112 I
e caeJap4.Scaffold18213   127438 0 +   720316 C
e cb4.chrX              17137979 97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I
e caeRem4.Crem_Contig15     6578 5 -  1794024 I

a score=-3776.000000
s ce10.chrX              2386130 59 + 17718866 TATTGTCAATCATATCAAGAAG---GGAACGAGAAACAAGAATTTTCGTTTTAGAAATTGAT-----
s caeRem4.Crem_Contig15     6583 42 -  1794024 --------------GTTTGGAA---GACACTAAAAACAAGATTATTCA-CTTGAAAAC--AT-----
i caeRem4.Crem_Contig15 I 5 C 0
s caePb3.Scfld02_0       3135556 41 -  4147112 --------------tcatagga---aacatgaaaaacaaaacttttta--tcaaaaat--tt-----
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   127438 59 +   720316 ---TGTCACCC---TCACAAAATTCGAAACAAGAATTAAGATAAATTATCTTTCTTGT--ATCTGAT
i caeJap4.Scaffold18213 C 0 I 348
e cb4.chrX              17137979 97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I

a score=611.000000
s ce10.chrX              2386189 3 + 17718866 ATC
s caeRem4.Crem_Contig15     6625 3 -  1794024 ACC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3135597 3 -  4147112 acc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979 97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I

a score=940.000000
s ce10.chrX              2386192 20 + 17718866 AACAATCGTATTTTTCACGT
s caeRem4.Crem_Contig15     6628 20 -  1794024 AAATATTATATCTCTCACGT
i caeRem4.Crem_Contig15 C 0 I 169
e caePb3.Scfld02_0       3135600  0 -  4147112 C
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979 97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I

a score=0.000000
s ce10.chrX              2386212 590 + 17718866  
e caePb3.Scfld02_0       3135600   0 -  4147112 C
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979  97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I
e caeRem4.Crem_Contig15     6648 169 -  1794024 I

a score=456.000000
s ce10.chrX              2386802 112 + 17718866 CAATAACATTCCATGATTTTTTTTCAAAACAA-GTCGTAAACGGAAAGGTTTAGAAAATAAACGTC---ACATGTTTTCCAACAAAAAAAAGTCCATTAAATTTTAACCTCTGTGA
s caePb3.Scfld02_0       3135600  98 -  4147112 caaaaccatatcatgtttttcttgaaaaacaaagtcaTATTCCAAATGA---AGAACAACATCGTTTATGCATGTTTTATTGCAAAA----------CTCGTTTTGTTCTC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979  97 - 21540570 I
e caeSp111.Scaffold582    406948 170 -   484378 I
e caeRem4.Crem_Contig15     6648 169 -  1794024 I

a score=5866.000000
s ce10.chrX              2386914 43 + 17718866 CAGAAAAACAATAGGTCAAACTAGTGCGTCTTGAAAGTACCTC
s caeSp111.Scaffold582    407118 43 -   484378 CAAAACAGTGAGAGGTCAAATTAGAATGTCCTCAGAGTGCTTT
i caeSp111.Scaffold582  I 170 I 23
s caePb3.Scfld02_0       3135698 43 -  4147112 CAAAATAACAGTAGGTTGAATTAGTGTGTCCTGTAAGTACTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979 97 - 21540570 I
e caeRem4.Crem_Contig15     6648 169 -  1794024 I

a score=-331.000000
s ce10.chrX              2386957 14 + 17718866 GTCTTGGATCTACA
s caePb3.Scfld02_0       3135741 14 -  4147112 TTTGTTAAAATGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979 97 - 21540570 I
e caeSp111.Scaffold582    407161 23 -   484378 I
e caeRem4.Crem_Contig15     6648 169 -  1794024 I

a score=273.000000
s ce10.chrX              2386971 1 + 17718866 T
s caeRem4.Crem_Contig15     6817 1 -  1794024 T
i caeRem4.Crem_Contig15 I 169 C 0
s caeSp111.Scaffold582    407184 1 -   484378 T
i caeSp111.Scaffold582  I 23 C 0
e caePb3.Scfld02_0       3135755 0 -  4147112 C
e caeJap4.Scaffold18213   127497 348 +   720316 I
e cb4.chrX              17137979 97 - 21540570 I

a score=56802.000000
s ce10.chrX              2386972 123 + 17718866 TGACCCAAATTAAAAAGATCATAACTATTCTCCTACGATA----------------GACTGATAGACTAACAACCGTGAAAT------------------GTTCCATCATTT---CCAATCAGTGATTAATCTGTGACGACCAAAAAGATGAAGACACAC
s cb4.chrX              17138076 158 - 21540570 TGACCTAAATTGAAATGATCATAACTTttccctttcttctttttcttcttactcCACTCTCCTAGGCTAACAACCGTAAagtcttcgtttttcttctacGATTCCATCAATCAGACACATCACTGTTTCATCAAATAAGAtcaaaaagataaaaacac--
i cb4.chrX              I 97 C 0
s caeRem4.Crem_Contig15     6818 121 -  1794024 TGACCCAAATTGGAACGATCATAACTACAC--------------------------TTTTCCGAGACTAACAACCGTAAAGT-----------TTTTTCGGTTCTATCAATCAAACACATCACTGATTCATTGAATGAGATTAAAAAGATAAAAACAC--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    407185 130 -   484378 TGACCCAAATTGAAAAGATCATAACTATTCTCTCC---------------------ATTTGACAGACTAACAGCCGTGaagt---------tttcttccattttcatcaatcAAACCCATCACTGATTCACCAAATGAGatcaaaaagataaaaacacAC
i caeSp111.Scaffold582  C 0 I 76
s caePb3.Scfld02_0       3135755 130 -  4147112 TGACCTAAATTGAAATGATCATAACTTATCTCTCC---------------------CTCAGATAGACTAACAACCGtgaagt---------ttttcttcagttcCATCAATCAAACCCATCAGTGATTCACTAAATGAGatcaaaaagataaaaacaCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I

a score=-2135.000000
s ce10.chrX              2387095 58 + 17718866 ACGTGATTGGT----------GGGGGGATAAGGATGCGTT--GAAGACCTTCCTTTGCCGT----------------TAGTTTCGA
s cb4.chrX              17138234 65 - 21540570 acgtgattagggaatacggtaaaaaagaagaagacaaaatagaaaaaataaagttttctc---------------------ttcga
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15     6939 62 -  1794024 ACGTGATTTGG---------ATAAGAGAAGAGGTTGGGTT--GAAATCGAATGTTTTCTCT-------------GTAcgatttcaa
i caeRem4.Crem_Contig15 C 0 I 12
s caePb3.Scfld02_0       3135885 72 -  4147112 --GTGATTGGg---------ataagaataaaaattgagac--cAAGAGAAACATTTACTCCcaatgttttgaagatttgatttca-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I
e caeSp111.Scaffold582    407315 76 -   484378 I

a score=5343.000000
s ce10.chrX              2387153 23 + 17718866 TTTTAACGATTTTATTTTCAAAG
s cb4.chrX              17138303 21 - 21540570 tttgaacga-tCT-CATTTAACA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15     7013 22 -  1794024 ttttaaCGATTCC-CAATCGACA
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    407391 22 -   484378 TTTTAACGAGTGT-CTTGTAACA
i caeSp111.Scaffold582  I 76 C 0
s caePb3.Scfld02_0       3135957 22 -  4147112 ttttaacGAGTTT-TTCGTTACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   127497 348 +   720316 I

a score=434143.000000
s ce10.chrX              2387176 420 + 17718866 TTTCAGATATCACCAGCTGATGAGAATGGGGATACTTATATTGTTAGTTTCGACATTAAAGAGAAACCAAATGATACTTTGGTATGGGCAGTACACACCTCATCCGCTCCTTACGACATGGCTGTAATGACTGATAATTGCCGGCGTGTAAAGAAAAGTCCGCCCGTCGTGAAGAACATGCCGGTCACAGATTCAACCATCGCTGGCGACGGTCTGGCAGGCAACACGTTGGTGATTTCCGGTGATAACAGCGAGGTGAGGGTCACCAAT-CATTGCTG-----TGGAC-AGTTCTTGC----AAGAAT-----AGTTGCAGGTTCTGGCTTGCGCGACAGTTATCATACCTGGCAAAGAACTGATGCACGCTTCGTTTCACCAGGAACCGATTGAAGGACATGTTCATATAATTCCGATCAAAAATAATGCAGTA
s cb4.chrX              17138324 420 - 21540570 TTCCAGATTTCGCCAGCCGACGAGAATGGTGATACCTACATAGTTAGTTTCGACATTAAAGAGAAACCCAATGATACGCTGGTCTGGGCTGTACACACGTCGTCCGCTCCTTACGACATGGCTGTAATGACTGATAATTGTCGGCGGGTCaaaaaaaGCCCGCCGGTCGTGAAGAACATGCCGGTCACCGATTCCACTATCAACGGCGACGGACTGGCAGGCAACACGTTGGTTGTTTCCGGTGATAATAGTGAGGTCGGTCTC-------CGTCAGCA---AC------GTTGTCTGCAAAGAAAACGTGTATTATTGCAGGTTCTCGCTTGCGCGACAGTTATCATACCTGGCAAACAGTTGATGCACGCATCGTTTCATCAGGAACCAATTGAAGGACACGTTCATATAATACCAATCAAGAACAATGCGGTA
i cb4.chrX              C 0 I 2560
s caeRem4.Crem_Contig15     7035 428 -  1794024 TTCCAGATTTCGCCTGCCGACGAGAATGGTGATACCTACATAGTTAGTTTCGAcataaaagaaaaaccaaatgATACTTTGGTATGGGCAGTACACACCTCATCCGCTCCTTACGACATGGCTGTAATGACTGATAATTGTCGACGAGTGaaaaaaaGTCCACCGGTTGTGAAGAACATGCCGGTTACCGATTCGACCATCAATGGAGATGGACTAGCTGGCAACACGTTGGTAGTTTCCGGTGATAACAGTGAGGTGGGGGTCACAGATTTGTCGATG---ACTGTacaattttctgc----aaaacgtGTA-TATTGAAGGTTCTTGCTTGCGCGACAGTTATCATCCCTGGCAAGGAGTTGATGCACGCTTCGTTTCATCAGGAGCCAATTGAAGGACACGTTCATATAATACCAATCAAAAACAATGCGGTA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    407413 425 -   484378 TTCCAGATTTCGCCAGCCGACGAGAATGGCGATACCTACATAGTCAGTTTCGACATAAAAGAGAAACCAAATGATACATTGGTATGGGCAGTACACACCTCATCCGCTCCTTACGACATGGCTGTAATGACTGATAATTGTCGGCGAGTAAAGAAAAGTCCACCGGTCGTGAAGAACATGCCAGTGACCGATTCTACCATCAATGGGGACGGACTGGCAGGAAACACGTTGGTGATTTCCGGTGATAACAGTGAGGTGGGGGTCACTGATTTATATATG---ACTGGAC-ACGTTTTGC----AAGACGTT---GCTTGCAGGTTCTGGCTTGCGCGACAGTTATCATACCTGGCAAGCAGTTGATGCACGCTTCGTTCCACCAGGAACCAATTGAAGGACATGTTCATATTATACCAATCAAAAACAATGCGGTA
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3135979 425 -  4147112 TTCCAGATTTCGCCAGCAGACGAGAATGGCGATACCTATATAGTTAGTTTCGACATAAAAGAGAAACCAAATGATACTTTGGTATGGGCAGTACACACCTCATCCGCTCCTTACGACATGGCTGTAATGACTGATAATTGTCGAAGAGTGAAGAAGAGTCCGCCGGTCGTGAAGAACATGCCAGTCATCGATTCCACCATCAATGGAGATGGACTGGCAGGAAACACGTTGGTGATTTCCGGTGATAACAGTGAGGTGGGGGTCACAGATTTATATATG---ATTGGAC-ACGTTTTGC----AAGACATT---GGTTGCAGGTTCTTGCTTGCGCGACAGTTATCATACCTGGGAAAGAGTTGATGCACGCTTCGTTTCATCAGGAACCAATTGAAGGACATGTTCATATAATACCAATTAAAAACAATGCGGTA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   127845 427 +   720316 tttcagATTTCTCCTGCCGACGAGAATGATAACACCTACATCGTTAGTTTTGATTTCAAAGAGAAACCGAATGACACATTGGTCTGGGCCGTCCATACTTCATCCGCTCCCTATGATATGGCTGTAATGACCGATAACTGTCGAAGAGTGaagaaaagtccaccaatcgtGAAGAACATGCCAGTCACAGATTCTACCATTGATGGCGACGGACTGGCAGGAAACACGTTGGTTGTTTCCGGTGAGAATAGCGAGGT-GGGGTCACAGATTTGTTCACAGACACTCGAT-TTGATTTGC----TAATCTAT---GATTGCAGGTTCTTGCATGCGCGACAGTTATCATTCCCGGCAAAGAGTTGATGCACGCGTCGTTCCATCAAGAACCGATCGAAGGACATGTTCATATAATACCGATCAAAAACAATGCGGTA
i caeJap4.Scaffold18213 I 348 C 0

a score=-10114.000000
s ce10.chrX              2387596 21 + 17718866 ---TGAGCTTAAAT---TTGAAGAT-TT
s caeRem4.Crem_Contig15     7464 20 -  1794024 ---TGATAGGTGTT---TGAGGAATT--
i caeRem4.Crem_Contig15 I 1 I 19
s caeSp111.Scaffold582    407840  8 -   484378 ---GGTTA--------------GAT---
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3136406 17 -  4147112 ---TGATAGTAG-----TGAGGGAA---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   128272 25 +   720316 ATATAAAGGGTGATCAGCTAGGCAC---
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17138744 2560 - 21540570 I

a score=289.000000
s ce10.chrX              2387617 15 + 17718866 TTAAATGCA---TGGAAT
s caeSp111.Scaffold582    407848 18 -   484378 GTAAAATCAAAGTAAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3136423 15 -  4147112 GGAAGATCA---taaagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   128297 15 +   720316 ACAAATGAA---TGCGAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17138744 2560 - 21540570 I
e caeRem4.Crem_Contig15     7484 19 -  1794024 I

a score=-1483.000000
s ce10.chrX              2387632 2 + 17718866 -TT
s caeRem4.Crem_Contig15     7503 2 -  1794024 -tt
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582    407866 2 -   484378 -TG
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3136438 2 -  4147112 -tt
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   128312 1 +   720316 A--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17138744 2560 - 21540570 I

a score=166400.000000
s ce10.chrX              2387634 181 + 17718866 GTTTTAGGTTCGCCTGGTACCTGATCTCAAGTATATGCCAAAATATGACTACGTTGAACCGGAGAAGAAAATCATGACTTGGGCATTTGTGGATTCTTGTACAGCATTGAATGATTCTACCAAACTAACAGACTACAGTGAAGTTGGTGTCGACTCGAGAGCGACTTTTGTTTTCAGTAAG
s cb4.chrX              17141304 181 - 21540570 gttttaggTTCGTCTGGTGCCTGATCTCAAATACATGTCAAAGTTTGATTATGTGGAGCCAGAGAAGAAAATCATGACTTGGGCATTTGTGGATTCTTGTGCAAATCCAAATGAAACAACAAAACAGACGGATTATAGTGAAGTTGGAGTTGATTCAAGAGCTACTTTTGCATTCAGTAAG
i cb4.chrX              I 2560 C 0
s caeRem4.Crem_Contig15     7505 181 -  1794024 tttttAGGTTCGATTGGTGCCTGATCTCAAGTACATGTCTAAATTTGACTATGTCGAACcggaaaaaaagattatgacATGGGCTTTTGTGGATTCATGTTTTAATACTAATGACTCAACAAAGCAAACGGATTACAGTGAAGTTGGGGTGGATTCCAGGGCAACTTTTGTATACAGTAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    407872 181 -   484378 TGTTTAGGTTCGTTTGGTTCCTGATCTCAAATATATGCCCAAGTATGATTATGTTGAaccggagaagaagataatgACTTGGGCGTTTGTTGATTCTTGTGTGAATGCAAATGATTCAACAAAACAGACGGATTATAGTGAAGTTGGAGTGGATTCGAGAGCTACTTTCGCTTTTGGTGAG
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3136444 181 -  4147112 ttttcaggTTCGCCTGGTACCTGACCTTAAGTATATGACCAAGTATGATTATGTTGAACCGGAGAAAAAGATAATGACCTGGGCATTCGTGGATTCCTGCTCAAACCCAAATGAAACGACAAAGCAAACTGACTATAGTGAAGTTGGTGTGGATTCCAGGGCAACTTTTGCATTCAGTaag
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   128313 181 +   720316 ATTCTAGTTTCGCCTTGTACCTGATCTCAAGTATATGGCCAAGTATGATTACGTTGAACCGGAGAAAAAGATCATGACTTGGGCATTTGTGGATTCGTGTGCAACTGCAAACAGCTCAGAACGACAAACTGATTATAGTGAAGTTGGAGTGGATTCCAGAGCAACATTTACGTTCTGTAAG
i caeJap4.Scaffold18213 C 0 I 18

a score=-7293.000000
s ce10.chrX              2387815 14 + 17718866 ATTTATTGAT------TTTT-
s cb4.chrX              17141485 18 - 21540570 TTcaat--acagtaattttt-
i cb4.chrX              C 0 I 1529
s caeRem4.Crem_Contig15     7686 12 -  1794024 TTCTTT--AC------TTCT-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    408053 13 -   484378 caaaat--aa------tttga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3136625  8 -  4147112 c-------gg------ttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   128494 18 +   720316 I

a score=-510.000000
s ce10.chrX              2387829 4 + 17718866 Ttta--
s caeRem4.Crem_Contig15     7698 4 -  1794024 --TCAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    408066 4 -   484378 tttc--
i caeSp111.Scaffold582  C 0 I 57
s caePb3.Scfld02_0       3136633 4 -  4147112 tttc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   128494 18 +   720316 I
e cb4.chrX              17141503 1529 - 21540570 I

a score=302.000000
s ce10.chrX              2387833 2 + 17718866 aa
s caeRem4.Crem_Contig15     7702 2 -  1794024 GA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3136637 2 -  4147112 aa
i caePb3.Scfld02_0      C 0 I 125
e caeJap4.Scaffold18213   128494 18 +   720316 I
e cb4.chrX              17141503 1529 - 21540570 I
e caeSp111.Scaffold582    408070 57 -   484378 I

a score=182.000000
s ce10.chrX              2387835 20 + 17718866 gga------ggactaacggttcggac
s caeRem4.Crem_Contig15     7704 26 -  1794024 TAATTTTGTGAATTAAAAGATCGGAC
i caeRem4.Crem_Contig15 C 0 I 89
e caePb3.Scfld02_0       3136639 125 -  4147112 I
e caeJap4.Scaffold18213   128494 18 +   720316 I
e cb4.chrX              17141503 1529 - 21540570 I
e caeSp111.Scaffold582    408070 57 -   484378 I

a score=0.000000
s ce10.chrX              2387855 591 + 17718866  
e caePb3.Scfld02_0       3136639 125 -  4147112 I
e caeJap4.Scaffold18213   128494  18 +   720316 I
e cb4.chrX              17141503 1529 - 21540570 I
e caeSp111.Scaffold582    408070  57 -   484378 I
e caeRem4.Crem_Contig15     7730  89 -  1794024 I

a score=350.000000
s ce10.chrX              2388446 6 + 17718866 ATAACC
s caeRem4.Crem_Contig15     7819 6 -  1794024 ATAACA
i caeRem4.Crem_Contig15 I 89 C 0
e caePb3.Scfld02_0       3136639 125 -  4147112 I
e caeJap4.Scaffold18213   128494 18 +   720316 I
e cb4.chrX              17141503 1529 - 21540570 I
e caeSp111.Scaffold582    408070 57 -   484378 I

a score=-128.000000
s ce10.chrX              2388452 1 + 17718866 G
s cb4.chrX              17143032 1 - 21540570 G
i cb4.chrX              I 1529 C 0
s caeRem4.Crem_Contig15     7825 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3136639 125 -  4147112 I
e caeJap4.Scaffold18213   128494 18 +   720316 I
e caeSp111.Scaffold582    408070 57 -   484378 I

a score=726.000000
s ce10.chrX              2388453 2 + 17718866 TA
s cb4.chrX              17143033 2 - 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15     7826 2 -  1794024 TA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    408127 2 -   484378 TA
i caeSp111.Scaffold582  I 57 C 0
e caePb3.Scfld02_0       3136639 125 -  4147112 I
e caeJap4.Scaffold18213   128494 18 +   720316 I

a score=9549.000000
s ce10.chrX              2388455 92 + 17718866 TCAAGTTCCTTGTGTCTTCTGTACTGTTTC-----CTCTAAGAAATTGAGAAAGT--AATGTGATAAT--------GGATGAA-AACAAAGATCATAACCAACTACAT
s cb4.chrX              17143035 91 - 21540570 CCACTTCCTTTCTGCCTTCTGTGTCCATCCTCTCACTTCCAAAATGTTTCACACA--AATTTGATAACGTTCTTCAAGA--AATAACGAAGatca-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15     7828 74 -  1794024 TCACGTTCTTTGTGTCTTCTGcgtc----------ttttgaaaaagttacaagAAGTAATATGAtaat--------aga--aa-aacaaagatCA-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    408129 71 -   484378 TCAAGTTTACTGTGTTTTCTGTCTAC-----------TTTGAAAGTTCCAAAACT--AATTTGATAGT--------AAA--AG-GACAAAGATCA-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3136764 81 -  4147112 TCAAGTCCCTTGTGTCTTCTGTCAGCAA-------TTTCTCAAATGTTCTGAATT--AATATGATACT--------AGA--AG-AGCGTAgatca-------cttttt
i caePb3.Scfld02_0      I 125 C 0
e caeJap4.Scaffold18213   128494 18 +   720316 I

a score=262253.000000
s ce10.chrX              2388547 307 + 17718866 AACTTATATTTCTTATTCAGCACTTCCGGAAAACTACACCTTGGAATCATTGGCTTTATATCGCGAAGACAAAATATTTGCATGCGCTGATATCGTGAATGTGGAACCGAGAATACTCAAATCTCTTGGAGTCACACTTCGCCAGACACACTATTTTGAACCAGTTATTGGATTGAAATCTCCACCGAAAGAGTTGCATATTAGGGATGATTGTTTAGATATTTCGACGGAGATTGTGCATAAAAACTATTTGAGCTATTATCCTTCGGTTAATATTTTCGGATCCGAATCAATTATGTTAAAGGTA
s cb4.chrX              17143126 301 - 21540570 aaatga------ttttccaGCACTTCCGGAAAACTACACAGTGGAGGCGTTGGCATTGTATCGAGAAGACAAACTGTTTGCATGTGCCGATATTGTAAATGTGGAGCCAAGAACTCTGAAGTCTCTAGGCGTGACATTTCGACAGAATCATTATTTTGAGCCGGTGATTGGACTGAGACACCCGCCAAAGGAGCTACACATCCGAGATGATTGTTTGGACATTTCCACTGAAATTATACataagaattatttgaattacTATCCATCTGTCAACATTTTTGGGTCGGAATCCATTATGTTGAAGGTA
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15     7902 300 -  1794024 AACTAA-------TTTCCAGCACTTCCGGAGAATTACACATTGGAAGCGTTGGCGTTGTATCGAGAGGACAAAATTTTTGCATGTGCAGACTTAGTAAATGTAGAACCAAGAACATTGAAATCACTTGGTGTAACTCTACGACAGAATCATTATTTTGAGCCAGTAGTTGGGTTGAAATCCCCTCCTAAAGAACTTCACATTCGGGATGATTGCTTGGACATTTCAACGGAAATTATTCACAAAAGTTATATGAGTTATTATCCATCAGTGAACATATTTGGATCAGAATCAATTATGTTGAAAGTA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    408200 296 -   484378 AA-----------ATTGTAGAACTTCCGGAAAATTACACGTTGGAAGCTCTTGCACTGTATCGAGAAGACAAGCTGTTTGCATGTGCTGACATTGTAAATGTGGAACCAAGAACATTAAAATCTCTTGGTGTCACACTCCGacaaaatcattattttgaaCCGGTGATTGGATTGAAATCTCCTCCAACTGAATTACACATTCGAGATGATTGTCTGGATATTTCCACGGAAATCATTCACAAGAACTATCTTGATTACTACCCCTCGGTTAATATTTTTGGATCGGAATCAATTATGTTGAAGGTA
i caeSp111.Scaffold582  C 0 I 38
s caePb3.Scfld02_0       3136845 296 -  4147112 at-----------tttttagcaCTTCCGGAAAATTACACATTGGAAGCATTGGCATTGTACCGAGAAGATAAACTATTTGCATGCGCAGACATCGTTAATGTGGAACCAAGAACTTTGAAGTCTCTTGGTGTCACTCTTCGACAGAATCACTACTTTGAACCGGTTATTGGGTTGAAATCACCTCCAAAAGAACTTCACATTCGAGATGATTGTCTTGATATTTCAACAGAAATTGTGCACAAAAACTATAAGAGCTACTATCCATCAGTTAATATTTTTGGATCAGAATCAATCATGTTGAAAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   128512 307 +   720316 aacaaaaattattttttgagctACACCGGAAAATTATACACTCAAAGCATTGGCCTTATATCGTGAAGATAtttttttCGCATGCGCAGATATTGTAAACGTTGAGCCACGAACACTGAAATCCTTTGGAGTTACTCTTCGACAGAACCATTATTTTGAACCAGTAATTGGATTGAAGTCCCCTCCAAAAGAACTTCACATCAGGGATGATTGTTTGGATATTTCCACTGAAATCGTTCACAAAAGTTACTTGTCTTATTATCCATCTGTTAACATTTTTGGATCGGAATCAATTATGCTCAGAGTA
i caeJap4.Scaffold18213 I 18 I 32

a score=-4581.000000
s ce10.chrX              2388854 32 + 17718866 TATCCGGTGTCTAGTGGCATTTCATTGCTGGA
s cb4.chrX              17143436 15 - 21540570 -----------------TATTTTGAGTATGCT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig15     8203 15 -  1794024 -----------------CAGCCCTGGTAAGAA
i caeRem4.Crem_Contig15 I 1 C 0
s caePb3.Scfld02_0       3137141 30 -  4147112 -TGCTAAGGTCT-TTggtattctgaaaatgac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   128819 32 +   720316 I
e caeSp111.Scaffold582    408496 38 -   484378 I

a score=-3599.000000
s ce10.chrX              2388886 9 + 17718866 ATAACATTA----
s cb4.chrX              17143451 9 - 21540570 AAagattta----
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15     8218 9 -  1794024 AGATAATTG----
i caeRem4.Crem_Contig15 C 0 I 14
s caePb3.Scfld02_0       3137171 5 -  4147112 agaTT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   128851 8 +   720316 -----ATCACGTT
i caeJap4.Scaffold18213 I 32 C 0
e caeSp111.Scaffold582    408496 38 -   484378 I

a score=71251.000000
s ce10.chrX              2388895 95 + 17718866 TTCAGAGTCTGGTTTTGAACAATTCTTGTAATGCGCTCCGACCACAGTTTGCTCGGCCGGCTGCAATTGCCAACTTCATACACCCTGTAATTGGA
s cb4.chrX              17143469 95 - 21540570 ttaagagtCTCGTACTGAATACTTCGTGTAGTGCTCTGCGGCCACAGTTCGCTCGCCCAGCTGCAATTGCAACATTCCTACACCCGATCATTGGA
i cb4.chrX              I 9 I 14
s caeRem4.Crem_Contig15     8241 95 -  1794024 TTCAGAGTTTGGTACTAAATACTTCCTGCAGTGCTCTGAGACCTCAATTCGCACGTCCTGCAGCTATTGCTACATTCCTTCATCCCATTATTGGA
i caeRem4.Crem_Contig15 I 14 I 6
s caeSp111.Scaffold582    408534 95 -   484378 TTTAGAGTCTGGTCTTGAACGGATCTTGTAGTGCTCTACGTCCCCAATTTGCTCGTCCGGCTGCTATTGCAAACTTTTTACATCCAATAATTGGG
i caeSp111.Scaffold582  I 38 C 0
s caePb3.Scfld02_0       3137176 93 -  4147112 TGCAGAGTTTGGTGTTGAATGGGTCTTGTAGTGCTTTAAGACCTCAATTTGCACGTCCGGCAGCTATTGCCAATTTCCTTCACCCAATCATTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   128859 95 +   720316 TTCAGAGTTTGGTGCTTAATGGCTCATGTAGTGCTCTCCGCCCACAATTTGCACAACCTGCTGCCATAGCGAACTTCATTCATCCAATTATTGGA
i caeJap4.Scaffold18213 C 0 C 0

a score=442.000000
s ce10.chrX              2388990 6 + 17718866 AGGTAA
s caeJap4.Scaffold18213   128954 6 +   720316 AGGCAA
i caeJap4.Scaffold18213 C 0 I 42
e caePb3.Scfld02_0       3137269 0 -  4147112 C
e cb4.chrX              17143564 14 - 21540570 I
e caeSp111.Scaffold582    408629 0 -   484378 C
e caeRem4.Crem_Contig15     8336 6 -  1794024 I

a score=421.000000
s ce10.chrX              2388996 4 + 17718866 TAGT
s cb4.chrX              17143578 4 - 21540570 AAGT
i cb4.chrX              I 14 C 0
s caePb3.Scfld02_0       3137269 2 -  4147112 --GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   128960 42 +   720316 I
e caeSp111.Scaffold582    408629 0 -   484378 C
e caeRem4.Crem_Contig15     8336 6 -  1794024 I

a score=-38.000000
s ce10.chrX              2389000 75 + 17718866 AGGATTAGCGCAAGTGGGGAAATTATTAAATACTACTGAAaacagt-----aaaactttttggaaaaaatt----gaaattttt
s cb4.chrX              17143582 81 - 21540570 Gacattttcttcaat---aaattttttgagaattcctcgaaaaatttcacGGGGAATTTCGCGAAAAtgtttcgagaaattttt
i cb4.chrX              C 0 I 122
e caePb3.Scfld02_0       3137271  0 -  4147112 C
e caeJap4.Scaffold18213   128960 42 +   720316 I
e caeSp111.Scaffold582    408629  0 -   484378 C
e caeRem4.Crem_Contig15     8336  6 -  1794024 I

a score=0.000000
s ce10.chrX              2389075 113 + 17718866 tcattgacagtgaaaaagtgacaattacggagttttagagcctccatgggaggcgggcgcggtttcagagcttaacgcctgcctccaacctgcccgtctcacgccggcctcta
e caePb3.Scfld02_0       3137271   0 -  4147112 C
e caeJap4.Scaffold18213   128960  42 +   720316 I
e cb4.chrX              17143663 122 - 21540570 I
e caeSp111.Scaffold582    408629   0 -   484378 C
e caeRem4.Crem_Contig15     8336   6 -  1794024 I

a score=752.000000
s ce10.chrX              2389188 88 + 17718866 gtgtaaaaagtggttcttttgccgcggccgacacttttcgag------tttctcgccga--actatataacagccgATAAATTAAGGTAAAACTAC
s cb4.chrX              17143785 94 - 21540570 GTTTAATAGGTAGTTTTGAAaagatggcctaacttttgcaagttgacttttctaggccaccatgataaaatggcctagaaat--agctAAACATAc
i cb4.chrX              I 122 I 39
e caePb3.Scfld02_0       3137271  0 -  4147112 C
e caeJap4.Scaffold18213   128960 42 +   720316 I
e caeSp111.Scaffold582    408629  0 -   484378 C
e caeRem4.Crem_Contig15     8336  6 -  1794024 I

a score=0.000000
s ce10.chrX              2389276 38 + 17718866 GAGACTTACACAGATGCAAAACTAAAGCTTACTCGATA
e caePb3.Scfld02_0       3137271  0 -  4147112 C
e caeJap4.Scaffold18213   128960 42 +   720316 I
e cb4.chrX              17143879 39 - 21540570 I
e caeSp111.Scaffold582    408629  0 -   484378 C
e caeRem4.Crem_Contig15     8336  6 -  1794024 I

a score=-159.000000
s ce10.chrX              2389314 123 + 17718866 AACTTGTTCCTTTCAAGTGTTCTTGTCC-TAATTCTAAAAATACATTACAAAAATTTTAAGTTTGGCTAAAAACACTTCTTAAATTTGCTTT---ATTTTTAAATTACAGTTGTGGTTGAAATTTTC
s cb4.chrX              17143918  92 - 21540570 aacttttgcaagttgagtttccTAGGCTACCATTCTAAAACGGCAT-------------------------GACATGCCCCTGGTCtgctttctgatttt----------ctgttcatgaagctttt
i cb4.chrX              I 39 C 0
e caePb3.Scfld02_0       3137271   0 -  4147112 C
e caeJap4.Scaffold18213   128960  42 +   720316 I
e caeSp111.Scaffold582    408629   0 -   484378 C
e caeRem4.Crem_Contig15     8336   6 -  1794024 I

a score=189.000000
s ce10.chrX              2389437 29 + 17718866 GAAAAAAATGTTTTAAGCA-------ATCATAAAAG
s caeRem4.Crem_Contig15     8342 36 -  1794024 GAAAACATTATTCTGAGAACAGTCACATCTCATGTG
i caeRem4.Crem_Contig15 I 6 C 0
e caePb3.Scfld02_0       3137271  0 -  4147112 C
e caeJap4.Scaffold18213   128960 42 +   720316 I
e cb4.chrX              17144010  0 - 21540570 C
e caeSp111.Scaffold582    408629  0 -   484378 C

a score=2238.000000
s ce10.chrX              2389466 4 + 17718866 TTTC
s cb4.chrX              17144010 4 - 21540570 tttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15     8378 4 -  1794024 TTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   129002 4 +   720316 TTTC
i caeJap4.Scaffold18213 I 42 C 0
e caePb3.Scfld02_0       3137271 0 -  4147112 C
e caeSp111.Scaffold582    408629 0 -   484378 C

a score=647804.000000
s ce10.chrX              2389470 845 + 17718866  
s cb4.chrX              17144014 844 - 21540570  
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig15     8382 848 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    408629 840 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3137271 853 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   129006 857 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-985.000000
s ce10.chrX              2390315 58 + 17718866 CTCAATAGTGTATCACGAAAAAAAATACTTTTTTCTTATAATTAGTAAAAAAGTTTTT
s caeJap4.Scaffold18213   129863 26 +   720316 -----------------------------TTATTTTTACGACTACTTGCC---TCTGT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3138124  0 -  4147112 C
e cb4.chrX              17144858 31 - 21540570 I
e caeSp111.Scaffold582    409469  0 -   484378 C
e caeRem4.Crem_Contig15     9230  7 -  1794024 I

a score=-7268.000000
s ce10.chrX              2390373 62 + 17718866 CTTAAAAATAATTGCACTCACTTGCAAGCTTTCGAATGACAATTCCAAAAATGTTGTAGTAA
s caeRem4.Crem_Contig15     9237 16 -  1794024 --------TGAT---------------ACTTCTAAATAA-----------------------
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    409469 12 -   484378 ---------------------------ATTGCTGATTGA-----------------------
i caeSp111.Scaffold582  C 0 I 2
s caeJap4.Scaffold18213   129889 50 +   720316 ACTAATTTTAATTGTAATCGGTGTGGAGTCGTTACGTTACGTTTTATAAA------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3138124  0 -  4147112 C
e cb4.chrX              17144858 31 - 21540570 I

a score=-14045.000000
s ce10.chrX              2390435 51 + 17718866 --TTTTTTTATTAAAACACCGTTGACTAGGTATTCCAACTGTAAGGTAAAAAA
s caeRem4.Crem_Contig15     9253  7 -  1794024 ---TTTAACA-------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409483 22 -   484378 --AGTTGATAGAAGGAA-----------------ACAATTG------------
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3138124 29 -  4147112 --TTTTGTTCTGAGAACTTCGCTG---------TATAA-TG------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   129939 13 +   720316 TACTTTTTTGGAA----------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17144858 31 - 21540570 I

a score=58228.000000
s ce10.chrX              2390486 202 + 17718866 TTTTCAGACACAATACACAAAATCGAATTGGGAATCCGGATTTCCTACTGAAATCTATTATTCTTTGAAGTACATGAATCAAATTGACCCCACAGTCAACCCGGTTTGTTACTTTTTTT--------------TGAAAATAATAATGGGGTTCCGAGTGCGTTTATCCCTTTTTTTCAGATTTTTTGCTACAAAAAATGGCAAAAAAGGATGAAAA
s cb4.chrX              17144889 202 - 21540570 tttgcagacaCAGTATGTGAATTCAAATTGGGAATCTGGATTCCCAACAGAAATTTATTATTCTCTgaagtacagtaatcaaacCGATCCTACAGTGAATCCGGTgagcttttttcaatttttttaaactctcGGAAAA----AAGGGGATACAGAAAAGGTCTCAACATTCTCCTGAAAGCTT----------AAATGAAgcaaaacaatgaaaa
i cb4.chrX              I 31 I 708
s caeRem4.Crem_Contig15     9260 119 -  1794024 GTTTTAGACCCAATATGTGAACTCAAACTGGGAATCTGGATTTCCAACCGAAATTTATTATTCGCTgaagtacagtaaccaaaCAGACCCAACTGTAAATCCGGtatattttttattac-------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409505 112 -   484378 ATTTCAGACTCAATATGTGAATTCTAATTGGGAATCCGGTTTTCCGACTGAAATCTACTATTCGCTgaagtacagtaatcagaCGGATCCGACAGCCAATCCAGTacacatt--------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3138153 112 -  4147112 TTTTCAGACTCAATATGTGAACTCGAACTGGGAGTCAGGGTTCCCGACTGAAATCTATTACTCTTTGAAGTATAGCAATCAAACTGACCCGACTATCAATCCAGTAAGAATT--------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   129952 137 +   720316 --TTCAGACACAATATGCAGGTTCAAATTGGGAATCTGGTTTCCCGACGGAGGTCTACTACTCGCTGAAATACAAAAATCAAACAGATCCTGAAGTTAACCCTGTAAGAACTCGGCTTC-----------------------TTGTGAAACTGCGAAAACGT------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0

a score=-12805.000000
s ce10.chrX              2390688 44 + 17718866 TGCACTTGAATACCCTCATAAAGTTTTTAAATTTATCCT----CCAAA
s caeRem4.Crem_Contig15     9379 28 -  1794024 --------------ttCTTCAGAAAGTTAT-TTTGTTATCTCA-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409617 32 -   484378 -----ttgatttcattttcttcatctgtaa--atattat---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3138265 34 -  4147112 ----CCTAATCacaattataaaatttttga-tttttttt---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   130089 12 +   720316 -----------------------GTTGTCA--TTATT-----------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17145091 708 - 21540570 I

a score=256315.000000
s ce10.chrX              2390732 440 + 17718866 TTCAGGAATCAGTGACATGGGACATTGTGAGCGATCAAAACCTAACTTGCAGCTCTGCAGTTATTTTTAATCCGCTACAAGTAGATGTGAGTG--GTTT---TT-----------TTTTC--CGAA---ATCACATTTGCATTCACATAAT------------------TTCAGGAATCTGAATGCACTAGTCAGCGATATGAGTTTTGTCCCATCGGAAGTGCTTCAAACCGCTCAAAGCCGCTGCTAATGCACGCCCGCTGGCATTTAACTGCTCAGGGTTTTCCGCTATCCGGCCCTTATTCAGGTATGTGTATCACTCATAGGAGGCGGAATTCGAAGCGTGTGAAAAAGTCATGAAATGTTGATGTCGCCTTACCGTCTATTTTATTGCAGTAATCGGCAAGACACTCAGACTGCAATCGATCAAGAACCCAAACCAGATTGGCTGTTACCCAGTTAAAAAAGTCTCAGAGGTA
s cb4.chrX              17145799 408 - 21540570 TTAAGGAATCCGTGTCGTGGGAAATCGTGAGTGACCAAAACCTGACGTGTAATACTGCTCTTGTCTTCAATCCATTACAAGTTGATGTGAGTTTCTCAA---AA-----------CTTCCGTTTCA---AATGAATT--CGTCCTCATCATCACT--------------TCCAGGAATCCGAGTGCTCCAGCCAGAGATATGAGTTTTGCCCAATCGGAAGTGCTGCGAACCGCTCGAAACCGCTTCTAATGCATGCTCGCTGGCATTTAACTGCGCATAGTTTCCCGCTTTCCGGTCCCTACTCAGG--TATGTAACATGTCTATGTG----------------TTGAATGATTCATATTAGGATCTA--------------------ATCTTAGTGGTTGGCAAGACACTTCGACTACGGTCAATCAGGAATCCCGATCAAATTGGTTGCTATCCAGTGAAGAAAGTTTCAGAGGTA
i cb4.chrX              I 708 C 0
s caeRem4.Crem_Contig15     9407 417 -  1794024 --CAGGAATCTGTCACTTGGGACATTGTGAGTGATCAAAACCTAACCTGCAATACTGCTTTGATATTCAACCCATTACAAGTTGATGTGAGTT--TGAA---GATTTTGTTCCTTTTTCCGTTTC-----------T--CAAACTCAATAAAACTTCT------TTTTATCTAGGAAACCGAATGCTCTATCCAAAGATACGAGTTTTGCCCTATCGGAAGTGCTGCAAACCGCTCGAAACCTCTTCTAATGCATGCTCGCTGGCATTTAACCGCCCAAAGTTTCCCACTTTCCGGCCCTTACTCAGG--TTTGTATCATAGTATTGCAAC--------------TAGCAGAGTTCAATTGatagaaca--------------------ttttcagttgttggAAAAACTCTCAGGTTGCGTTCCATCAAGAATCCGAGTCAAGTGGGATGTTACCcagtgaaaaaagtgtcagAGGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409649 439 -   484378 tttagGAATCAGTATCTTGGGAAATAGTGAGTGATCAAAATTTGACATGCAGCACAGCAGTGATATTCAATCCGTTACAAGTTGATgtaagtt--ttgaaagaa-----------tttct--TGCA---ACCAATCTAACCATTTTATCATCGCTTCA------ACATTTCCAGGAATCCGAATGCACTAGCCAAAGATACGAGTTTTGCCCAATCGGAAGTGCTGCAAACCGCTCGAAACCTCTTTTAATGCACGCTCGCTGGCATTTAACTGCTCAAAGCTTCCCACTTTCCGGCCCATATTCAGG--TGTGTATCattaaaaaggaaagaatttc-aaaccggagaattattcatttgatATTCGA-------------ACTACTTATTTCAGTTATTGGAAAGACACTGCGACTTCGTTCAATCAAGAATCAAAACCAAATTGGTTGCTACCCGGTGAAAAGAGTATCGGAGGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3138299 433 -  4147112 tttaggaatcCGTTCTATGGGAAATTGTGAGTGACCAAAACCTGACATGCAGCACTGCGTTAATTTTCAATCCCTTACAAGTCGATGTGAGTT--TTTA---CG-----------TTTCC--TGCA---AATAATTC--TCATTATCTCAT---TTCC------TTGTTTCTAGGAATCCGAATGCACTAACCAACGATATGAATTTTGCCCAATCGGAAGTGCTGCAAACCGCTCAAAACCTCTTTTAATGCATGCTCGCTGGCATTTAACTGCTCAAAGTTTCCCACTTTCCGGTCCATACTCTGG--TGTGTATCATTAAA----GAcgagtttc-aaacttttgaaatattcatgCTGTATTTAAAT-------GCATACAACTTCTTTCAGTTGTTGGAAAGACGTTGAGGCTACGCTCGGTTAAGAATCAAAGTCAAATTGGATGTTACCcggtgaaaaaagtttccgaagTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   130101 448 +   720316 TTCAGGAGTCAGTGTCGTGGGAAATTGTAAATGATCAAAATTTGACCTGCAGCACAGCAGTGGTGTTTAACCCATTACAAGTTAACGTGAGTC--TTCA---TC-----------TGTTT--CTCGTTTACTATTTCCgccttttatttttcaattccaTACGTTTACTCCCAGGAATCCGAATGCACAAGCAAGAGATACGAATTCTGCCCGATTGGAAGCGCGGTAAACCGCTCGAAACCCCTGCTAATGCATGCCCGCTGGCACCTAACTGCTCAGAGCCTTCCGCTTTCGGGCCCTTATTCAGG--TGAGTGAGAAAGAAATGCG----------AAACGCGTGAAAAATTCATTGAATGTTTTT-ACATCCCGCCGTCTTTTTAATTGCAGTAATCGGAAAGACACTCAGATTGCGATCAAACAGAAATCGAAATCAAATTGGATGTTACCCAGTaaaaaaaGTTTCCGAGGTA
i caeJap4.Scaffold18213 C 0 I 65

a score=-469.000000
s ce10.chrX              2391172 1 + 17718866 A
s cb4.chrX              17146207 1 - 21540570 A
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig15     9824 1 -  1794024 c
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    410088 1 -   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3138732 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   130549 65 +   720316 I

a score=-2105.000000
s ce10.chrX              2391173 8 + 17718866 ACAATAAA------
s caeRem4.Crem_Contig15     9829 8 -  1794024 aaaataga------
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    410089 3 -   484378 ------GAA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3138733 8 -  4147112 ------GAACTGAA
i caePb3.Scfld02_0      C 0 I 86
e caeJap4.Scaffold18213   130549 65 +   720316 I
e cb4.chrX              17146208 37 - 21540570 I

a score=1421.000000
s ce10.chrX              2391181 6 + 17718866 TCAAAC
s caeRem4.Crem_Contig15     9837 6 -  1794024 ttaaac
i caeRem4.Crem_Contig15 C 0 I 53
s caeSp111.Scaffold582    410092 6 -   484378 TTAAAC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3138741 86 -  4147112 I
e caeJap4.Scaffold18213   130549 65 +   720316 I
e cb4.chrX              17146208 37 - 21540570 I

a score=246.000000
s ce10.chrX              2391187 9 + 17718866 AAGGAACCA
s caeSp111.Scaffold582    410098 9 -   484378 AACAGACTA
i caeSp111.Scaffold582  C 0 I 71
e caePb3.Scfld02_0       3138741 86 -  4147112 I
e caeJap4.Scaffold18213   130549 65 +   720316 I
e cb4.chrX              17146208 37 - 21540570 I
e caeRem4.Crem_Contig15     9843 53 -  1794024 I

a score=0.000000
s ce10.chrX              2391196 880 + 17718866  
e caePb3.Scfld02_0       3138741  86 -  4147112 I
e caeJap4.Scaffold18213   130549  65 +   720316 I
e cb4.chrX              17146208  37 - 21540570 I
e caeSp111.Scaffold582    410107  71 -   484378 I
e caeRem4.Crem_Contig15     9843  53 -  1794024 I

a score=50.000000
s ce10.chrX              2392076  9 + 17718866 AATACGGCA--
s caeJap4.Scaffold18213   130614 11 +   720316 AATAAAGCAAG
i caeJap4.Scaffold18213 I 65 C 0
e caePb3.Scfld02_0       3138741 86 -  4147112 I
e cb4.chrX              17146208 37 - 21540570 I
e caeSp111.Scaffold582    410107 71 -   484378 I
e caeRem4.Crem_Contig15     9843 53 -  1794024 I

a score=58.000000
s ce10.chrX              2392085 2 + 17718866 TA
s caeRem4.Crem_Contig15     9896 2 -  1794024 TG
i caeRem4.Crem_Contig15 I 53 C 0
s caeJap4.Scaffold18213   130625 2 +   720316 CA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3138741 86 -  4147112 I
e cb4.chrX              17146208 37 - 21540570 I
e caeSp111.Scaffold582    410107 71 -   484378 I

a score=546.000000
s ce10.chrX              2392087 1 + 17718866 T
s caeRem4.Crem_Contig15     9898 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3138827 1 -  4147112 t
i caePb3.Scfld02_0      I 86 C 0
s caeJap4.Scaffold18213   130627 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17146208 37 - 21540570 I
e caeSp111.Scaffold582    410107 71 -   484378 I

a score=83901.000000
s ce10.chrX              2392088  99 + 17718866 TTCCAGGCAACTTTCCGATGGGTGGTTTACACCAATACTTCGCTGTCTACTGTGCAGCAAAAGATTTCTGACAAAGCCGGAGTTCCGTCATTCAAGGT------A
s cb4.chrX              17146245  99 - 21540570 tttcaggcAACATTCAGATGGGTGGTTTACACAAATACCTCGCTCTCCATTGTTCAGCAAAGGATTTCCAAAAAGACCAAAGTACCAGTTTTCAAGGT------A
i cb4.chrX              I 37 I 230
s caeRem4.Crem_Contig15     9899  99 -  1794024 TTTCAGGCGACATTCAGATGGGTGGTTTACACCAACACTTCGCTGTCAACAGTACAGAAAAGAATTTCTGAGAAGACTAAAGTTCCAACATTCAAAGC------G
i caeRem4.Crem_Contig15 C 0 I 21
s caeSp111.Scaffold582    410178  99 -   484378 TTCCAGGCAACATTCCGCTGGGTGGTTTACACCAACACTTCTTTGTCTACTGTACAGAATCGTATTTCTAAAAAGACTGGCGTTCCGACTTTCAAGGT------A
i caeSp111.Scaffold582  I 71 I 10
s caePb3.Scfld02_0       3138828 105 -  4147112 TTTCAGGCAACATTCCGCTGGGTGGTTTACACTAATACTTCTCTGTCGACTGTACAGAAACGAATTTCGGACAAAACGGGGATTCCGACGTTTAAGGTGACACGa
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18213   130628  99 +   720316 TTTCAGGCAACATTCCGATGGTTGGTTTACACCAACACTTCTTTGTCATCtgttcagcaaaaaatttcgaaaaaaacaaaagttccAGTGTACAAGGT------A
i caeJap4.Scaffold18213 C 0 C 0

a score=204361.000000
s ce10.chrX              2392187 571 + 17718866  
s cb4.chrX              17146574 559 - 21540570  
i cb4.chrX              I 230 C 0
s caeRem4.Crem_Contig15    10019 525 -  1794024  
i caeRem4.Crem_Contig15 I 21 C 0
s caeSp111.Scaffold582    410287 498 -   484378  
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3138943 739 -  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18213   130727 541 +   720316  
i caeJap4.Scaffold18213 C 0 I 114

a score=1971.000000
s ce10.chrX              2392758 15 + 17718866 GGTG---A--TGTGCACATC
s cb4.chrX              17147133 17 - 21540570 CGCATATA--TATGTGCAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    10544 15 -  1794024 CGCA---A--TGTGTAcatc
i caeRem4.Crem_Contig15 C 0 I 15
s caeSp111.Scaffold582    410785 15 -   484378 CGCA---ATGTGTGTACA--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3139682 13 -  4147112 CGCA---A--TGTGTACA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   131268 114 +   720316 I

a score=-994.000000
s ce10.chrX              2392773 10 + 17718866 AACAGGGGCT
s cb4.chrX              17147150  2 - 21540570 --------CT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    410800  1 -   484378 ---------T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3139695  1 -  4147112 ---------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   131268 114 +   720316 I
e caeRem4.Crem_Contig15    10559 15 -  1794024 I

a score=8270.000000
s ce10.chrX              2392783 20 + 17718866 ------CCTACTCA---CTTCAGATGAGA
s cb4.chrX              17147152 23 - 21540570 ------CCTGTTTGGAGCTCCAGATGAGA
i cb4.chrX              C 0 I 281
s caeRem4.Crem_Contig15    10574 23 -  1794024 ------cttATTCAGGTCTCCAGATGAgt
i caeRem4.Crem_Contig15 I 15 I 3
s caeSp111.Scaffold582    410801 28 -   484378 CTCACTCTCTTTTAGGGC-CCAGATGAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3139696 29 -  4147112 CTCACTCTCGGTTAGGTCTCCAGATGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   131268 114 +   720316 I

a score=13927.000000
s ce10.chrX              2392803 41 + 17718866 --GCTTCTTCTCTTTTTAGCAATT--------TACTACGTAATTCCACCTG
s caeRem4.Crem_Contig15    10600 51 -  1794024 tcttcttctcttctcgtAACGATCACATCGAGCAAAACGTAATTCCACCTG
i caeRem4.Crem_Contig15 I 3 I 245
s caeSp111.Scaffold582    410829 49 -   484378 --GCCTCCTTTATTCGTAACGATCACATGAAGCAATACGTAATTCCACCTG
i caeSp111.Scaffold582  C 0 I 307
s caePb3.Scfld02_0       3139725 49 -  4147112 --GCCTCCTCTTCTCGTAACGATCACATGAAGCACGACGTTATTCCACCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   131268 114 +   720316 I
e cb4.chrX              17147175 281 - 21540570 I

a score=69.000000
s ce10.chrX              2392844 2 + 17718866 TC
s caePb3.Scfld02_0       3139774 2 -  4147112 CC
i caePb3.Scfld02_0      C 0 I 339
e caeJap4.Scaffold18213   131268 114 +   720316 I
e cb4.chrX              17147175 281 - 21540570 I
e caeSp111.Scaffold582    410878 307 -   484378 I
e caeRem4.Crem_Contig15    10651 245 -  1794024 I

a score=0.000000
s ce10.chrX              2392846 782 + 17718866  
e caePb3.Scfld02_0       3139776 339 -  4147112 I
e caeJap4.Scaffold18213   131268 114 +   720316 I
e cb4.chrX              17147175 281 - 21540570 I
e caeSp111.Scaffold582    410878 307 -   484378 I
e caeRem4.Crem_Contig15    10651 245 -  1794024 I

a score=686.000000
s ce10.chrX              2393628 92 + 17718866 tttattttagcacatttcgaatctatccgttcaaaattccccgaaccgttaCAACTTGTT--GATCTAAAAGTGTTT----------CCATGTATTCCTGTGCC
s caeJap4.Scaffold18213   131382 96 +   720316 tttatttttatacacACGTATTTCATTCATTCAATGTTTTTCT--------TTACTTGTCCCTAGCCAAAAGTGTCTAGTTCATCAGCCATGTTTTCTTCCCAT
i caeJap4.Scaffold18213 I 114 C 0
e caePb3.Scfld02_0       3139776 339 -  4147112 I
e cb4.chrX              17147175 281 - 21540570 I
e caeSp111.Scaffold582    410878 307 -   484378 I
e caeRem4.Crem_Contig15    10651 245 -  1794024 I

a score=-576.000000
s ce10.chrX              2393720 3 + 17718866 TCA--
s cb4.chrX              17147456 3 - 21540570 TCA--
i cb4.chrX              I 281 C 0
s caeJap4.Scaffold18213   131478 3 +   720316 --AGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3139776 339 -  4147112 I
e caeSp111.Scaffold582    410878 307 -   484378 I
e caeRem4.Crem_Contig15    10651 245 -  1794024 I

a score=184.000000
s ce10.chrX              2393723 5 + 17718866 TTTTT
s cb4.chrX              17147459 5 - 21540570 TGTCC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3140115 5 -  4147112 tctct
i caePb3.Scfld02_0      I 339 C 0
s caeJap4.Scaffold18213   131481 5 +   720316 TGCAT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    410878 307 -   484378 I
e caeRem4.Crem_Contig15    10651 245 -  1794024 I

a score=157.000000
s ce10.chrX              2393728 3 + 17718866 TTT
s cb4.chrX              17147464 2 - 21540570 -CT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    10896 2 -  1794024 -TT
i caeRem4.Crem_Contig15 I 245 I 1
s caePb3.Scfld02_0       3140120 3 -  4147112 cat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   131486 3 +   720316 GTT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    410878 307 -   484378 I

a score=156345.000000
s ce10.chrX              2393731 350 + 17718866 TCTCTCAAC-ATTTCGCAACGACGCTCAT--------GTACACACGACGCGTGTATACATGTCGTTACCCTGTAT-CTAGGCGAG-----CTGATATCTACTATC-----AGGATTCCGTGGAATTTTTGAGTAGAATTCATCAAATTTGTGTGAATAAATGTCACATG----AAGAC-----GGCAGTAAGCAACGCATAAATCGACCCTGT-GTGGAA----AGAAGGCGATGGAGAATGAGAGAGG--AGGGGAAAGGGAACCTTATTTC-----------------TGGGTGGTGCCCCCGAA---AACCACC---ATCGACAATTTTCTTTCACGTCAAAACT-AGCAA----TGTTTCTTGCAGCGGG---GGGCTAGGTGGGGCTCCAGAACTTTTCATGTTCCCTCTTC
s cb4.chrX              17147467 338 - 21540570 CCACCCCATCATTTCGCA-------------------ACACACACAACGCGTGTATACATGTCGTTACCTTATTACCAGTCAGGAAGACGCTGATACCT--TATCGGCGATGGATTCCGTGGAATTTTTGAGCAGAATTCATCAAATTCATATGCCCGAATGTCACACACACTACGACCTCCTGGCAGTAAGCAACGCATAAATTGGTCCGCCTGC-------------------CGCAAAAAG-GAGG--GGAATAAGAAGAACCTCCGTCCACTGGTGGGACCTCTCAAGGTC----TCT--------CTTTTCTCAACACAACCATTTCCTTTCACGTCAAAACT-AGCAATGTATGTTTCTTGAAGCGAGGCGGGCCTAGTCGAGGGTCC-----------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15    10899 327 -  1794024 TCTTTTCAT-ATTTCGCAA-GATCTATATCCACTCACAAACACACGAAGCGTGTATACATGCCGTTACCCTATTA-CAACCAAAA-----CTGATATCT--TATC-----TGGATTCCGTGGAATTTTTGAGCGGAATTCATCAAATTTGTGTGACCAAATGTCACATG----AAGAC------GCAGTAAGCAACGCATAAATTCACCCTGTTGAAGAAGGCGAGCAATATAGGAGAAATAAG-GAGGAAGAGATGAGGAGAACCTCCGTCC-----------------AGGAC----CCC--------CGCTTCC---AACAACCATTTCCTTTCACGTCAAAACT-AGCAA--TATGTTTCTCAAAGCGGG------TTAGGTGGGACCCA-----------------------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    411185 329 -   484378 TCTCCCAAC-ATTTCGCAACCCTCCATGTCTTG----ATACACCAAAAGCGTGTATGCATGCCGTTACCCTATTA-CCACCAAAA-----CTGATATCT--TATC-----GGGATTCCGTGGAATTTTTGAGCGGAATTCATCAAATTTGTGTGGCCAAATGTCACATG----AAGAC------GCAGTAAGCAACGCATAAATTGACCCTGTGGTAGAAGGCTAGCAATATATGTAGAATAAG-GGGT---TAGGGTGGAGAACCTTCGTCC-----------------AGGGT----Cccccctctcttttttcc---aacaaCCATTTCCTTTCACGTCAAAAAT-GGCAA--TATGTTTCTCGAAGCGGG------TTAGGTGGGACCCA-----------------------
i caeSp111.Scaffold582  I 307 C 0
s caePb3.Scfld02_0       3140123 326 -  4147112 tctctcaaC-ATTTCGCAACCACCTATTTCCTC----ACAAATTCAAAGCGTGTATACATGCCGTTACCCTATTA-CCATCAAAA-----CTGATATCT--TATC-----GGGATTCCGTGGAATTTTTGAGCggaattcatcaaatttgtgTGGCCAAATGTCACACG----AAGAT-----GGCAGTAAGAAACGCATAAATCGAGCCTGT-GTAGAAGA--AGGAAGCCCAGGAGAATGAG-GGGT--ACGAAGAAGAGAACCTTCGTCC-----------------TGAGT----CCCCCCTC---CTTTTCC---AACAACCATTTCCTTTCACGTCAAAACTGGGCAA--TATGTTTCTTGAAGCGGG------TTAGGTGGGACCCA-----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   131489 279 +   720316 TATCTCAAA-ATTTCGCA-------------------ACACG-GCGGAGCGTGTGTACATGCCGTTACCCTATTA-CCA-----------CTGATATCC--TATC------GGTTTCCGTGGAATTTTTTAGTAGAATTCATCAAATTTGTGAGTCCGAATGTTACATA-------------------TAAGCAACACATAAATTGGGACCAA-ACAGAGAGCTAG-----------AGAAGAA-GAGT------------GAACCTCCGTCC-----------------AAGGA----CCC-----------ACAC---GACAACCATTTCCTGTCACATCAAAACT-CGCAA--TATGTTTCT---------------TTCGTTGAAGCTTTTGAAACTATTTTCTTCGCTTTTC
i caeJap4.Scaffold18213 C 0 I 417

a score=21245.000000
s ce10.chrX              2394081 33 + 17718866 TTTTTTATAC---GAGCTATTAT-GACAAGTTGCACT
s cb4.chrX              17147805 35 - 21540570 --TTTTTTACGGAGAGCTATTACGAACAAGTTGCACT
i cb4.chrX              C 0 I 1156
s caeRem4.Crem_Contig15    11226 31 -  1794024 --TTTTTTAC---GAGCGATTAC-AACAAGTTGCACT
i caeRem4.Crem_Contig15 C 0 I 643
s caeSp111.Scaffold582    411514 31 -   484378 --TTTTTTAC---GAGCGATTAC-AACAAGTTGCACT
i caeSp111.Scaffold582  C 0 I 562
s caePb3.Scfld02_0       3140449 31 -  4147112 --TTTTTTAC---GAGCTATTAC-AACTAGTTGCACT
i caePb3.Scfld02_0      C 0 I 742
e caeJap4.Scaffold18213   131768 417 +   720316 I

a score=0.000000
s ce10.chrX              2394114 1144 + 17718866  
e caePb3.Scfld02_0       3140480  742 -  4147112 I
e caeJap4.Scaffold18213   131768  417 +   720316 I
e cb4.chrX              17147840 1156 - 21540570 I
e caeSp111.Scaffold582    411545  562 -   484378 I
e caeRem4.Crem_Contig15    11257  643 -  1794024 I

a score=4600.000000
s ce10.chrX              2395258 11 + 17718866 AAATGTTTATT
s caeRem4.Crem_Contig15    11900 11 -  1794024 AAACGATCATT
i caeRem4.Crem_Contig15 I 643 C 0
s caeSp111.Scaffold582    412107 11 -   484378 AAACGTTCATT
i caeSp111.Scaffold582  I 562 C 0
s caePb3.Scfld02_0       3141222 11 -  4147112 AAACGTTTATT
i caePb3.Scfld02_0      I 742 C 0
e caeJap4.Scaffold18213   131768 417 +   720316 I
e cb4.chrX              17147840 1156 - 21540570 I

a score=22959.000000
s ce10.chrX              2395269 43 + 17718866 TTATAGCTTTCCAAAATCGCAATCCAG-CGAGGGGACACCGGCA
s caeRem4.Crem_Contig15    11911 43 -  1794024 TTATAGCTTT-CGCAATCGCAATCCGCAAAAAGGGACGCCGTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    412118 42 -   484378 TTATAGCTTT-CACAATCGCAATCCGC-CGAAGGGACACCGGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3141233 42 -  4147112 TTATAGCTTT-CACAATCGCAATCCAA-CGAGGGGACACCGGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   132185 43 +   720316 tTATAGGTTT-CGCAATCAAAAATCAGCCGAGTGGACACCGGGA
i caeJap4.Scaffold18213 I 417 C 0
e cb4.chrX              17147840 1156 - 21540570 I

a score=300624.000000
s ce10.chrX              2395312 549 + 17718866  
s cb4.chrX              17148996 567 - 21540570  
i cb4.chrX              I 1156 I 3
s caeRem4.Crem_Contig15    11954 542 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 62
s caeSp111.Scaffold582    412160 536 -   484378  
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3141275 532 -  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   132228 537 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-16512.000000
s ce10.chrX              2395861 50 + 17718866 CAATGTTTTCAAATC-----TTGTAGTGT--AGTTCAGTGTATGTATAAAG----------------GAAGCA------------------
s cb4.chrX              17149566 29 - 21540570 TAATGCTTG---ATC---AGCTGCTATTT--------------------------------------TGAGCA------------------
i cb4.chrX              I 3 I 3
s caeSp111.Scaffold582    412699 54 -   484378 taatttgtt---attttgggtttttattt---atatgcagcatatatataattt-------------CGGATA------------------
i caeSp111.Scaffold582  I 3 I 5
s caePb3.Scfld02_0       3141810 55 -  4147112 TCTTATTTT---ATCCAAATCTATGATGT---GTTCTGAAATCGtataaaattt------------ataaata------------------
i caePb3.Scfld02_0      I 3 I 5
s caeJap4.Scaffold18213   132765 76 +   720316 ---------------TAAAACtatcgtttcgcgttctccaaaaatttaaaattccatTTTACTGATATGGGTGGTAATGCTCAAGAAGCCC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    12496 62 -  1794024 I

a score=-26781.000000
s ce10.chrX              2395911 254 + 17718866 --TGGAAGCCATAGATTA------------------------------------------------------------TGCACTCT-AAATCCAA------------AATA-----------------------------------------------------AAACCCGATAA----TTTCAGATGTGACCGAGAAAAATATTTCAAAAATGCTCACTCTTTGTGAAACTCTGACAAAGCGACAGGTACT----------------------------TGAAAATA---CTATTAATTTAGAAA---------------------TATT------------GA-------------AGTTTCAGTATATATCATCAACCAACACATTGACCATTATTTTCCAGTCAGATGAGCTTATAGAATATCGAGGTGCAAGGTTAAGCTATCAATATCACGGTAAGT
s cb4.chrX              17149598 168 - 21540570 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------Tgtacttttcaga------aaacaaaaatgtgtccAGAATTAGTGTGCTCTGTG------------------AGGAAAT--------------------------------------------------CAAA------------------TTCAAGC------------AG------------------CAATACATTTCAATAAATAATAGTCTTCTGTTAACGTTCCATTCGGATGAGCTGTACGAATTTCGTGGAGCAAGATTGAGTTATCGCTATTTCGGTGAGT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15    12558 280 -  1794024 --CGGAAGCCTT--ATTTCTTGC-------------------TTGTCTGCTA-----------------TGAACATG-TGAACACTAAGCTGAGA------------AATA----------------------------------------------------------CgccaatatttttcagatgtgacCGAAAAGAACTTTTCAAGAATCATTACGCTCTGTGAGAGTTTGCGGATGCGGCAGGTAATTATTAA-GTTG-----------------AATGAATA------------TATAAA------------------TTCTATC------------AAT------------AATTCCAGTTCATATCAACATCAAATACCATtactgtcatttttcaatctgatgaattgtttgaatttcgTGGTGCTAGGTTAAGCTATCGTTATTAtggtgagt
i caeRem4.Crem_Contig15 I 62 C 0
s caeSp111.Scaffold582    412758 369 -   484378 --GAGAAGCCATAGATTTTTGGT-------------------GTTTATGGGAAAATG----GCGGGGGAGAGGGATGTTGCCCTTTTGAATGC---------------ATATC--------------------------------------------------AAccttcaat--ttattttcagaagtcacagaaaaaaacacaacaAAGATGACAACAATCTGTGAAGATTTGAGGAAACGACAggtgaataaaaatatttttattaggGGGACACAGAAAGagtagatttttttctgtaaaaattttctatttgaaaaaaattcaaacggCTTTCCCATATATCAAATCAGT-TATCTTTCAGTTTCTCTCCATGTCCAATGAAATCACCATCATTTTCCATTCGgatgaaatatttcagtaTCGAGGAGCTCGGTTAAAGTTTAATTACTTTGGTAag-
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3141870 295 -  4147112 --GTGAAGCCCTTGGTGTTTGGC-------------------CAGt-tgtaaaaatt------------ggaaaatgctGCACTTTTCTATTCGA------------AATATC--------------------------------------------------AATACTctataatcattttcagagaatgtagagaaaaacatttcaacattGACTACCCTTTGCGAAGATTCACATAAACGTCAGGTAAA-------ATTC-----------------AAAgacta---ttttttctgaaaaaa---------------------aaac------------tat------------tctttcagtttctttcCGCTTCAAATGCCATCACCGTCATTTTCCATACAGATCAACTTGTTGAGAACAGAGGAGCAAGACTTAGTTATCGGTATTATGGTAAGT
i caePb3.Scfld02_0      I 5 I 52
s caeJap4.Scaffold18213   132841 388 +   720316 TGGCTACGTTTCTAATTACATGTTGCGCTACGCTCTGTTTCGTTCCATGAGAAAGCTCACAGCGCGCATTATGAACAAAGTCCTTTTGTTTCCAAATGAATAGGATCAATAACAAGGaaaagagcaagaaaaaggaggaaaaaaactatgtaaaaaaaTCTTGAACGCACTAGAGCTTTTTGCAGAGGCCACGGAAAAGAATGCATCGAAAATGATAACAATATGTGAACCAGTGAGGAATTATCAggtaaa----------------------------gaaaaaaa--------------caaa--------------gcgTTGCGAAT------------GA-------AGTATGTGTTACAGTATATCTCTCCAtcaaattcaatttcaataatttttcaatccgATGATATCATTGAAAGTCGCGGAGCAAGATTATCCTACCGATATTATGGTAACT
i caeJap4.Scaffold18213 C 0 C 0

a score=-3837.000000
s ce10.chrX              2396165 7 + 17718866 ACTGTTT--
s cb4.chrX              17149766 1 - 21540570 --T------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    12838 5 -  1794024 --tgttt--
i caeRem4.Crem_Contig15 C 0 I 119
s caeSp111.Scaffold582    413127 4 -   484378 ---actt--
i caeSp111.Scaffold582  C 0 I 3
s caeJap4.Scaffold18213   133229 7 +   720316 --TATTaac
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3142165 52 -  4147112 I

a score=-763.000000
s ce10.chrX              2396172 4 + 17718866 AAAA-
s cb4.chrX              17149767 3 - 21540570 -ATA-
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582    413134 4 -   484378 gaaa-
i caeSp111.Scaffold582  I 3 I 47
s caeJap4.Scaffold18213   133236 4 +   720316 -acaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3142165 52 -  4147112 I
e caeRem4.Crem_Contig15    12843 119 -  1794024 I

a score=-425.000000
s ce10.chrX              2396176 16 + 17718866 AAAAGAACAAAAAAAT
s cb4.chrX              17149771 14 - 21540570 AAGCGCACTCAAAA--
i cb4.chrX              I 1 C 0
s caeJap4.Scaffold18213   133240 16 +   720316 aaaatgttaaacaaAT
i caeJap4.Scaffold18213 C 0 I 9
e caePb3.Scfld02_0       3142165 52 -  4147112 I
e caeSp111.Scaffold582    413138 47 -   484378 I
e caeRem4.Crem_Contig15    12843 119 -  1794024 I

a score=-1438.000000
s ce10.chrX              2396192 220 + 17718866 CAAATTTCGTAGTTTTTAGTAAAATTTAAATAAAGAGTGGTTTGGAATAGGTatgtgcttaaatgaacaaatttagtaatgaaacttttcaaaaaatgttcaaaattttttattatggtggctcaaagtttgaaaaaaaggtcaattttatgtagttaaattaaaattttgacaacttatccgtgtcgcagcggtccga--aattggttttttttacgaaat
s cb4.chrX              17149785 150 - 21540570 ------tggcaattttgag-----ctcaattatctcgtttcctgtcaaagatatg---------gaAAAGATGT--CAACG--------TAGAAACTGTTGATAAT----------------------TTTacaaacaa----cattttat-cagttga--taaatctTTCGAATCTT-------TCAAACCAATccaaataattgagctt------gaaat
i cb4.chrX              C 0 I 28
e caePb3.Scfld02_0       3142165  52 -  4147112 I
e caeJap4.Scaffold18213   133256   9 +   720316 I
e caeSp111.Scaffold582    413138  47 -   484378 I
e caeRem4.Crem_Contig15    12843 119 -  1794024 I

a score=0.000000
s ce10.chrX              2396412 36 + 17718866 atcactttattgcatattcggatagattttcttacg
e caePb3.Scfld02_0       3142165 52 -  4147112 I
e caeJap4.Scaffold18213   133256  9 +   720316 I
e cb4.chrX              17149935 28 - 21540570 I
e caeSp111.Scaffold582    413138 47 -   484378 I
e caeRem4.Crem_Contig15    12843 119 -  1794024 I

a score=-2401.000000
s ce10.chrX              2396448 416 + 17718866 ttagttcgttgattaatagtaAGGAACAATCAGCCGGCCTATCGCTGCCACTCGCGGCTCAAGTAAAGAGCGACGCGGAACCCCGAACGTGTCGGACGCCGCGGCGTTCTCACATCGAAGCCTTAatgatcattcaaaaaattgattttcggaccgctgcgacacgggaaagcggcctaagttggagaaccgctaaaca-aaatttttgaaaaa-------aattgaaaattt------tagagatatttcat----tacgaaattcgttcaagtgagcacaattagagtctataTAACTGAA----ATACTGCGGCATGTATTTAGAAAC--CTGAAA-----TTTCTGAATAGAGCACTAGCAATATGACTTCTGGGAAAACTTACAAGTCTTAGAGAACAAATTGAGATTTAGATAACTAACTCCCTCTTTTAAA----AAATTTG
s cb4.chrX              17149963 320 - 21540570 tcagttcattttt----------------------ggcct-tttcgaccattttca--------------------gaaacctaGAGCGCA--------------GTTGTCACGT-----TTctaat--ttatttaaaaa--------------cgttgaaaaatgtaaaacagacctagattaaaaactttgcattcataaAACTTTaacaaattctgtgaatgcaaagtttttaatctagatctgtttcacACCATCCGAAGTT--TTCAAG-----ATGATTGGAAACCTGAACACCAAGCTCCAGACTACTGAAAGTAGccaaaaccaactgaaaattcgtttttgtaTATCGTATTA-----------CCTGG----------------TATTGTATAAAATGAG-----------------CTTCTattgaatctgaaacttt
i cb4.chrX              I 28 C 0
e caePb3.Scfld02_0       3142165  52 -  4147112 I
e caeJap4.Scaffold18213   133256   9 +   720316 I
e caeSp111.Scaffold582    413138  47 -   484378 I
e caeRem4.Crem_Contig15    12843 119 -  1794024 I

a score=726.000000
s ce10.chrX              2396864 2 + 17718866 TC
s caeRem4.Crem_Contig15    12962 2 -  1794024 tt
i caeRem4.Crem_Contig15 I 119 C 0
s caeSp111.Scaffold582    413185 2 -   484378 TT
i caeSp111.Scaffold582  I 47 C 0
s caePb3.Scfld02_0       3142217 2 -  4147112 TT
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold18213   133256 9 +   720316 I
e cb4.chrX              17150283 0 - 21540570 C

a score=68368.000000
s ce10.chrX              2396866 314 + 17718866 TTAGATATTACCACTTGCCCTCCTGGTTGGACTGAGCTATCGGACGGCAAATGCGTGAGACATGAGATTGATCAAAAGACTGACTGGATCACGGCTC-----------------------------------------------------AGAATCGTTGCATGGAACAGCAGAGCAATCTCATCACGATAGAAACTGGT---GCCAAAACCACGGAACTTGAAAGT---------------------TGGTT----------TGGTGCAG-----GCTTTTTCTGTCATTTCCCAAAA---------------------------------TTTGCAGATTTATTTAAAAGTGTTCCCACGAGGTTTTGGACTGGAGACACGGATGCAACAACCGAGGGATTGCTTGTCGGAATCAATGACAGAGAAGCTCCAAACAT
s cb4.chrX              17150283 312 - 21540570 tcagacCTTACCTCTTGTCCACCTGGTTGGAGAGAAATTGCAGATGGTAGATGTGTACTTCTAGTCACTGACCCAAAAGTGGACTGGGTTAAAGCCC-----------------------------------------------------AGAATCGATGCTTGGATCAAAGGAGCAACTTGTTGATGCTGGATTCCAAC---GAGAAAGTTACGGAAATTGAGAGT---------------------AAGAT------TATTTTCGTCAGCAAACAAGAGTCATA--------Aatct----------------------------------tttcagatttattcAAAGGTGTTCCTGACAAAATCTGGACTGGAAACAATGATGCAGTAACTGAGGGGAAACTTATATATATTTTGAGCAAGGAGGCTAAACTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    12964 372 -  1794024 tcagaacttccaTCATGTCCCCCGGGCTGGACAGAGCTATCCAACGAGACATGTGTACGTCTAgaaactgatcaaaaaacagactGGGTCAGAGCTCAGGTA--TACTCAAACCTAGA--GACGTCTAACTTCGatgat---atatttttagaatcgaTGTTTGGATCAACGAAGTAACCTGTTGATGCTGGAAAACGAT---GCTAAAGTGAATGAACTGGAAAGt---------------------gagtt--------------tcaagaaa-aatagttatagTATGACTAAACT----CCGGGATTCGAC-----------------ATTACAGAATTGTACAAAGCTGTTCCTACTAAACTATGGACTGGAAATAACGATGCAGCAATTGAAGGGAAACTAGTTGATATTAGCAGTAGGGAAGCTCCCCATTT
i caeRem4.Crem_Contig15 C 0 I 73
s caeSp111.Scaffold582    413187 364 -   484378 TCAGAGCTGACATCGTGTCCACCTGGATGGACAGAACTATCAGACCAGAACTGCGTGAAAGTGGAAACTGACCAGAGAAATGACTGGATTACCGCTCAGGTACCTTCTTAGaactatttaaaaattcatatttgtTCTC------ATTTCAGAGAAGATGCTTAGAACAGCAAAGTAATCTAGTGATGTTCaactcaaat---gaaaaagtgaacgAGCTCGAAAGT--------AAATGTGACGAATGGTTT---------------CAG-----TGTAATCATGTCA-----AATCA---------------------------------CTTGCAGATTTGTTTAAAACTATTCCAACTAAACTATGGGTTGGAAATAACGACGCAGTTACTGAAGGGAAACTGGTCGatttggaaaacaaagatGCTCTTCATTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3142219 416 -  4147112 TCAGACATAACATCCTGTCCCCCAGATTGGACGGAACTATCCAATCATACATGTGTACGAATCGAAACTAATCAAAAACTGGACTGGATCGGAGCCCaggtaagttttcaaaaatatt----------tttttgttatcctcaaaattttagaaacgaTGTCTGGAACAACAGAGTAATTTGATAACATT---CTCGAACATAGAAAAGGCAAATGAACTTCAAGGTTGGTGGAAAACTATGAGAACtgagtttttaggtttttactACaa-----aaaaaCCATGTGA-----AATGATAATTCAGTGTCTGTTAAAAATAAGTAAAACGTTTTGCAGAAAAGTATGAAAGTATCAACATGAAATTGTGGATTGGAAACAATGATGCTCTGGTAGAGGGAAAGTTGGTGGACTTCACAAATAAAGAGGCTCCACGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   133265 322 +   720316 TTAGACGTCGGTTCTTGCCCGCCCGGTTGGACAAAACTATCAGATGATAATTGCGTGAAAGTCGTGGTCAATGAAAAATTGGACTGGATCAGTGCCC-----------------------------------------------------AAAACAGGTGTCTCGAGCAGCAGAGTAACTTGGTGATGGTGGATTCTTCG---CAGAAAACTTCGGAAATGGAAGGT------------------------TT-----------------------GAAACCaatatttttcttaattt-tgtccgtttttttttaata-------------tttttagaTTTCTACAAAAACGTTCCTAATAAATTATGGGTCGGCTATACTGACTCAGCCACAGAAGGAAGGTTGGTATCAATTGACAACAAGGATGCGAGCATTAT
i caeJap4.Scaffold18213 I 9 C 0

a score=-20032.000000
s ce10.chrX              2397180 74 + 17718866 CCCAGGGT-----------------AAGCATAGTTTTCTCACGGTATTCATTC-TAAAAATTGGTTTAAGTCGTG-------------------AATCCGGAAATAGTTAC-
s cb4.chrX              17150595 75 - 21540570 -GCAAGGA-GGCTATTC--------TCTC---GGTTAGTGACAACAATTACAT-TTCGATt---tcatctttttg-------------------aattttagccAAGATTA-
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold582    413551 66 -   484378 ATCAAggt-----------------tttc--aggttttt---gGTCGGATTCT-TTGAact---tcagattttca-------------------gatctgGATCCACGTCT-
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0       3142635 86 -  4147112 GTCAAAGTGAGTCATTCCTATTTGATTCCAAAGGTTTTTTAAggaaaatatat-caaaaag---cCAAAGTTTCA-------------------GAGTCGGA--CATGCCG-
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   133587 85 +   720316 ACCAgggt------------------------aatttttaaattcaaatacATACAAAACA---TTAGAGTCTAATTGCTCTTTTTTCAGGCGTGATCCTTCAACATCCCTC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    13336 73 -  1794024 I

a score=187704.000000
s ce10.chrX              2397254 402 + 17718866 ACTGACAATAACGACAATAATGATTGCATGACTGTCCACTTCGGTGATAATCAACCTTTTCGAATGGATGGTTGTGCGTCTTTCAATGCATATATTTGTGAGATGAAGAAAGATGGAACGACTGTCCTGTACCCGCCACCGGTTCAAAACATCCAAGATGGATCCAACTCTC--ACAATTCAGCATACGCACTTTGGCTTTTGCTGTTTTTAATTGGGTTACTGTTTTTGACAATAATGGCGTTTTTGTGTTTCAGTGAGTAT----------TCTTATTTCCCTCATGATTTTTTTTC-TTCAACACGGTT-GTTTTAGTGTGCTGGAAACAAAAGGACG---CAAGAGTTCACACGGAAACTTCCGGCGTTCAGCAGAATGCATTCATGAGCGAGACTACTCATCGCATAGATCAAC---
s cb4.chrX              17150680 395 - 21540570 ATAGACAACAATGAGGATAACGACTGTATGGTTCTGCAGTTCAGTGACGAGAATTTGTTCCGCATGGATAGTTGTGGCTCTTTCAATGGATACATCTGCGAgatgttcaaaaatggaacATCAGAATTGTACGAACCGAATGCTATAGATATTTACGATGGGGCTTACTCGAAAAACAGTCAGTATACA--CTATTCCTGCTGTTGTTTTTGATTGGATTACTGTTTTTGACGATCGCTGCATTTCTGTTATTCAGTAAGTTT------------GCTTTTCG---AAGAAATGTGTTC-TGAAAAGAAGTTATTTTCAGTGTGTTGTAAACAAAAAGATG---CTCGCGTACACACGGAAAATGCAACCATTCAGCAGAATGCATTCATGAGCGAGTCTTCGCATAATACGG---AGC---
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig15    13409 398 -  1794024 ACTGATAACAACGACGATAATGATTGCATGACACTGCAATTTGGAGATACTGAAATGTTGCGAATGGATAGTTGCGCTTCACTAAATGGTTATATTTGTGAGATGAAAAAAGACGGAACATCAGTATTGTACGATCCTCCAATTGAAGAGATTAAAGGAGGTTCCTTCTCAAAAACTAGTCAGTATACG--TTATGGatacttttgtttttaattggCTTGCTATTCTTGACAATTCTCGCCTTCCTgtgtttcagtgagttttaaCATTCTCTCACATTTTGTTTacgacattttttg-t------------ttttcagtctgCTGGAAACAAAAAGACG---CTCGAGTTCACACAGAAAACGCAACCATTCAGCAGAATGCATTCATGAGCGACTCTGCGCATCGTGCGG---ACC---
i caeRem4.Crem_Contig15 I 73 C 0
s caeSp111.Scaffold582    413626 402 -   484378 ATAGATAACAATGAGGATAATGATTGCATGTTTCTTCAGTTCGGAGACAATGAGCAGTTCAGAATGGATAGTTGCGCGTCTTTCAACGGATATATttgtgaaatgaagaaagacgGAACATCGACATTATACAATCCATTGGTacaagaaattcaagaagGATCAAATTCTCGAACAAGTGAATACACT--ATTTGGCTACTCatgtttttgattggaaTTTTGTTCCTGACAATCACTgcatttttgtgttttagtaagattcaaatttccgacgtttttttctttcatcttttattcat------------tttgtaGTATGCTGGAAACAAAAGGACGGAAACAGGGTTCACACAGAAGGTGCAAACATTCAACAGAATGCATTCATGAGCGAGACTTCTCAACGTGTTG---AAA---
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3142726 357 -  4147112 ATTGATAACAACGAAGACAACGACTGTATGGTTCTTCAATTCCAAGAAGCAGATGAGTTCAGAATGGATCAATGCCAAAATTATAATGGATACATTTgtgaaatggagaaaaacgGTTCATCTGTTTTATATCCACCACCAGTGAAAGAAATTCAGGAAGGAACAAACATGAGAGCAGGCCAATACACT--CTTTGGTTACTTCTATTTTTAATAGGAATTCTTTTCTTGACAGTTCTTGCTTTCTTGTGCTTCAGTAAGACAATTAATTCtggcttttttttcctcactgatttattgat------------tttgcaGTGTGTTGGAAACACAAGGAAGGAGCACGAATCCACACAGAAAGTACAACTA---------------------------------------------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   133672 396 +   720316 ACCGATAACAATGACAACAACGACTGCATGACTCTTCAATTCGGTGACAATCAGCCCTATCGAATGGACAGTTGTGCTTCTTACAATGGTTTTATATGTGAAATGAAGAAAGATGGCACAACGGTGCTCTATGAGCCACCAATTCAAGATATTCAAGATGGCTCATTTTCGAGAAGTTCTCAGTATACA--CTTTGGATTCTTTTGTTCCTTATTGGATTGTTGTTTTTGACAATTCTGGCGTTCTTATGTTTCAGTAAGTTA------------TTTTTTCTCCATGTATGGTTATCC-TTTCAAAC-----ATTTCAGTGTGCTGGAAACAAAAGGACG---CGAGAGTTCACACGGAAAGTACCACGATTCAACAGAATGCGTTCATGAGCGATTCTTCTGTACGAGCGG---AGCAAC
i caeJap4.Scaffold18213 C 0 I 148

a score=4994.000000
s ce10.chrX              2397656 34 + 17718866 AATCCAGAACATCTGGAAATGGG------CAACGTAAGTT
s cb4.chrX              17151075 40 - 21540570 AACCGAGAGTTtctggaggaggaggagggcaaagtaagtt
i cb4.chrX              C 0 I 1133
s caeRem4.Crem_Contig15    13807 34 -  1794024 AACCAAGAGTAGCCGCACCTGGA------CAAAGTGAGTT
i caeRem4.Crem_Contig15 C 0 I 122
s caeSp111.Scaffold582    414028 33 -   484378 GATCGAGAGGATCCACCGGTGGA------CAAAGTCAGT-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3143083  0 -  4147112 C
e caeJap4.Scaffold18213   134068 148 +   720316 I

a score=-1904.000000
s ce10.chrX              2397690 69 + 17718866 GGTCTAAAAAAATGCAACTTG-TATAGCAAAATGT-TTTA-----------GTCACTTCGGTCAATAATAAAAATTATCTCA
s caeSp111.Scaffold582    414061 74 -   484378 --TTTGATGTTATACATTTTGTTAcaacaaaatgt-ttca-----gattcTGTTACTGTGGCAAACGATGTCAATAGGCCCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3143083 32 -  4147112 ----------------------TTCAACAAAATGCATTCATGAGTGATTC----------------------------CTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   134068 148 +   720316 I
e cb4.chrX              17151115 1133 - 21540570 I
e caeRem4.Crem_Contig15    13841 122 -  1794024 I

a score=602.000000
s ce10.chrX              2397759 13 + 17718866 ATCAACGAATAAA
s caePb3.Scfld02_0       3143115 11 -  4147112 --CAACGAGTGGA
i caePb3.Scfld02_0      C 0 I 123
e caeJap4.Scaffold18213   134068 148 +   720316 I
e cb4.chrX              17151115 1133 - 21540570 I
e caeSp111.Scaffold582    414135  0 -   484378 C
e caeRem4.Crem_Contig15    13841 122 -  1794024 I

a score=0.000000
s ce10.chrX              2397772 250 + 17718866 CGCGTAATAAACTACGTGATAAacactgaaaagttgtcaaattttgaagttttagctaaaaatatatttaactttttttttccaaaactttgtgcgcccataactttttttgaaaaattttcagaacgtttcattacgaaatttggtagttttggaacacattgggtccaaaaaaccagtctcaaatttcaatactccacttttaaAAGTTAAAGACAATTTTTTTGGATTGACAACgtgttataaaaag
e caePb3.Scfld02_0       3143126 123 -  4147112 I
e caeJap4.Scaffold18213   134068 148 +   720316 I
e cb4.chrX              17151115 1133 - 21540570 I
e caeSp111.Scaffold582    414135   0 -   484378 C
e caeRem4.Crem_Contig15    13841 122 -  1794024 I

a score=-1664.000000
s ce10.chrX              2398022 186 + 17718866 catgctttataacaatttccccctggcgctactccgcatttaaAACGCCAAAATGTTAACTTCTACAAACCTCTTATTTTAGTATAAGGGTTTTTAAATATTCTCTTGGAAACTCCACTTTCATACATATAGAAGCTTTTTTTTTGTTTTCAGAAATTGCTCCAGTAGCATCTTCGTCTGGCGGAG
s caePb3.Scfld02_0       3143249  94 -  4147112 CATTCCGTACAACAGTTCCCAACAGAATCGA-------TTTAA-----------GTTAATT-----------------------------------------------GGAACCCCATTAAAATATA------------------ATTTACAGATAATATTCCTGT------TTCGAATGACG---
i caePb3.Scfld02_0      I 123 C 0
e caeJap4.Scaffold18213   134068 148 +   720316 I
e cb4.chrX              17151115 1133 - 21540570 I
e caeSp111.Scaffold582    414135   0 -   484378 C
e caeRem4.Crem_Contig15    13841 122 -  1794024 I

a score=921.000000
s ce10.chrX              2398208 8 + 17718866 CCAACCGT
s caeRem4.Crem_Contig15    13963 8 -  1794024 CTAACAGA
i caeRem4.Crem_Contig15 I 122 C 0
s caePb3.Scfld02_0       3143343 8 -  4147112 TTAACAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   134068 148 +   720316 I
e cb4.chrX              17151115 1133 - 21540570 I
e caeSp111.Scaffold582    414135 0 -   484378 C

a score=753.000000
s ce10.chrX              2398216 4 + 17718866 ACAT
s cb4.chrX              17152248 4 - 21540570 ACCT
i cb4.chrX              I 1133 C 0
s caeRem4.Crem_Contig15    13971 4 -  1794024 ACAG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3143351 4 -  4147112 ACGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   134068 148 +   720316 I
e caeSp111.Scaffold582    414135 0 -   484378 C

a score=8290.000000
s ce10.chrX              2398220 21 + 17718866 CTCGAAATTCGCCAATCAATG
s cb4.chrX              17152252 21 - 21540570 CCCGAAGCTCACCAGTCACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    13975 21 -  1794024 CTCGCAGCTCTCCCGTTGTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    414135 21 -   484378 CTCGAAGCTCTCAGGTAGCAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3143355 21 -  4147112 CTAGAAGCTCACCAGTTACCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   134068 148 +   720316 I

a score=287282.000000
s ce10.chrX              2398241 936 + 17718866  
s cb4.chrX              17152273 886 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    13996 896 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    414156 904 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3143376 902 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   134216 963 +   720316  
i caeJap4.Scaffold18213 I 148 I 1034

a score=-5992.000000
s ce10.chrX              2399177 28 + 17718866 TACGAAAAAATCATTTTAAAAATGTAAT
s cb4.chrX              17153159 24 - 21540570 aaggaaaaag----cGTTTCAATTCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    14892 22 -  1794024 AAACTAAAA------TTAAGAATTGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415060 14 -   484378 tctc-aaaa-------------tatatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3144278 17 -  4147112 -----aaaa------gcagcATTATTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   135179 1034 +   720316 I

a score=99342.000000
s ce10.chrX              2399205 133 + 17718866 CT----TACTAAGTAATCAATGTAAGTGCATCCGATTGAAATCAGATAAATATTCCATGAAGTCAGACCGCCAACCATCACCAGAAGAATGCCACTCAGCAAGTAACAGAACACAACTGACGTTCGAGCAAAACCTG
s cb4.chrX              17153183 136 - 21540570 TG-ACCTACCAAATAATCAATATATGTGCACCCAATGGATATCAAGtagaagttccaaaaagtaAGGCCGCCAACCATAACCAATAAGATGCCACTGAGGAGATAAGAAAAGACAACTGCAGTTCTcgcaaatcctg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    14914 133 -  1794024 TA----TACCAAGTAATCTATGTAAGTACATCCAATGGAAATCAAGTAGACGTTCCATAATGTCAATCCTCCAACCATAATCAGAAGGATAGCGCTGAGCAAATAACAGAAAACAACCGATGTGCGAGCAAACCCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415074 137 -   484378 taaaCAAACCAAGTAGTCGATATAAGTGCATCCAATAGAAATGAGATAGACGTTCCACAGTGTTAATCCACCAACCATAATTAAGAGTATAAAACTGAGCAGATAACAGAACACCACGGATGTTTTAGCAAACCCTG
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3144295 137 -  4147112 CTGACGAACCAAATAGTCGATATAGGTACATCCGATAGAAATGAGGTAGACATTCCACAACGTTAATCCGCCAACCATTACAAAAAGAATACCACTGAGCAAGTAACAAAATACCACCGCTGTTCGAGCAAACCCTG
i caePb3.Scfld02_0      C 0 I 125
s caeJap4.Scaffold18213   136213 131 +   720316 ----CTTACCAGATAATCTATATAAGTGCATCCTATTGAAATCAGATACACATTCCACATCGTCAATCCACCAACCATTACCAACAGTATTCCACTGAGCAAGTAACAGAAAACCACCGATGTCCTCGCAAAACC--
i caeJap4.Scaffold18213 I 1034 C 0

a score=-3914.000000
s ce10.chrX              2399338 12 + 17718866 --AAGTAAT----TGAAA
s cb4.chrX              17153319 11 - 21540570 --aaaatttgaaa-----
i cb4.chrX              C 0 I 426
s caeRem4.Crem_Contig15    15047  7 -  1794024 --Aaataat---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415212  7 -   484378 --Aaatatt---------
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   136344  5 +   720316 TGAAA-------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3144432 125 -  4147112 I

a score=3537.000000
s ce10.chrX              2399350 9 + 17718866 AACGTTTTT
s caeRem4.Crem_Contig15    15054 9 -  1794024 aacattttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415219 7 -   484378 --cgttttc
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   136349 9 +   720316 AACGTTTTT
i caeJap4.Scaffold18213 C 0 I 84
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e cb4.chrX              17153330 426 - 21540570 I

a score=159.000000
s ce10.chrX              2399359 4 + 17718866 CAAT
s caeSp111.Scaffold582    415226 4 -   484378 aaat
i caeSp111.Scaffold582  C 0 I 89
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e caeJap4.Scaffold18213   136358 84 +   720316 I
e cb4.chrX              17153330 426 - 21540570 I
e caeRem4.Crem_Contig15    15063 0 -  1794024 C

a score=812.000000
s ce10.chrX              2399363 15 + 17718866 TATTTTGAAGTACAA
s caeRem4.Crem_Contig15    15063 15 -  1794024 tgtttcgaagtctaa
i caeRem4.Crem_Contig15 C 0 I 85
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e caeJap4.Scaffold18213   136358 84 +   720316 I
e cb4.chrX              17153330 426 - 21540570 I
e caeSp111.Scaffold582    415230 89 -   484378 I

a score=0.000000
s ce10.chrX              2399378 800 + 17718866  
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e caeJap4.Scaffold18213   136358  84 +   720316 I
e cb4.chrX              17153330 426 - 21540570 I
e caeSp111.Scaffold582    415230  89 -   484378 I
e caeRem4.Crem_Contig15    15078  85 -  1794024 I

a score=273.000000
s ce10.chrX              2400178 23 + 17718866 ATTTTCAATCCATACAGTTTTCC
s cb4.chrX              17153756 15 - 21540570 ATTTCCGACCCGTAC--------
i cb4.chrX              I 426 C 0
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e caeJap4.Scaffold18213   136358 84 +   720316 I
e caeSp111.Scaffold582    415230 89 -   484378 I
e caeRem4.Crem_Contig15    15078 85 -  1794024 I

a score=-990.000000
s ce10.chrX              2400201 25 + 17718866 TGCCCATTAAATAATGTTCGCCCCA---
s cb4.chrX              17153771 24 - 21540570 TGTACAT----AAACATAAATCGCTTCA
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold582    415319 25 -   484378 TGTACAGTGGAAAACATGTACAACT---
i caeSp111.Scaffold582  I 89 C 0
e caePb3.Scfld02_0       3144432 125 -  4147112 I
e caeJap4.Scaffold18213   136358 84 +   720316 I
e caeRem4.Crem_Contig15    15078 85 -  1794024 I

a score=1425.000000
s ce10.chrX              2400226 6 + 17718866 AACACA
s cb4.chrX              17153798 6 - 21540570 AACTGT
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold582    415344 6 -   484378 AACTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3144557 6 -  4147112 AACTGA
i caePb3.Scfld02_0      I 125 C 0
e caeJap4.Scaffold18213   136358 84 +   720316 I
e caeRem4.Crem_Contig15    15078 85 -  1794024 I

a score=9474.000000
s ce10.chrX              2400232 32 + 17718866 AGTGTTTATTCTTCT-------ATACAAAACGAAAAGTC
s cb4.chrX              17153804 35 - 21540570 AGTGTTTATTTTCCTCCTTTTCATAAAA----AGTCATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    15163 28 -  1794024 AGTGTTTGAATTTCT-------ATACAA----CAACGTT
i caeRem4.Crem_Contig15 I 85 C 0
s caeSp111.Scaffold582    415350 28 -   484378 Agtgtttatttttct-------attcat----aaAAGTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3144563 28 -  4147112 AGTGTTTATTCTTCT-------ATTCAT----AAAAGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   136358 84 +   720316 I

a score=242269.000000
s ce10.chrX              2400264 386 + 17718866 AGAATCACTGACCGTCATAATCGCAAATAATGTCCTGAAGTGGTGCATGTTCTAGTATTGTCGTGCAATATGTTGTTTGAGAAGACTCCTGAAAGAATACACTTTGAATTTACCACATACCAAAAAAACTGTACA----AA-----------CTTACTAAGAACAAATGATCGGAAAACGACTGATATCCGGCTATAATGATTGTGGCCGCCGCAAGTGTCAAATTTGCAATGAATAGAAAGAAATGGCGATGGTTGTGTAACCCAACACACTGGTTGATCCAAATACAGTGGTGATCCATCCCAAGTACACAT----------------------------------------------------TTCTCGCACACGGAGCAGTGATGAGCGTTATCGCTTTTCCAGTAATTGCACTTGGAGCAAAATGAATCGCCTTCTTCCTGACAAAAA
s cb4.chrX              17153839 368 - 21540570 -----TACCAACCATCGTATTCACAAATAATGTCTTGAAGAGGTGCGTGCTCCAGAATTGTTGTGCAAAATGTGTATTGTGAgtactcctg---------------aaaatagtacT----------ATTATATAGCTCAAAG---ATCCTTTTTACCATAAACAAATGATCATAGAATGACTGGAAACCCGCAAAAATGATAACACTGGCAGCTAGTGTCAAATTTGCTACAAAGAGGAAGAAATGGCGATGATTGTGTGATCCAACACACTGATTAATCCAAATGCAATGATGGTCCATGCCATATATACAC----------------------------------------------------CGCTCGCACACTGAGCAATGATGTGTTCTGTCGCTTTTCCAGTAGTTGCATTTGTCGCAAAATTCATCACCTTCTTCCTAAAATCCA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15    15191 372 -  1794024 AGAACCACTGACCGTCATAATCGCAAATAATGTCCTGAAGAGGTGCATGTTGTAGTATTGTCGTGCAATAAGTTGTTTGAGAGTAGTCCTG---------------AATATAACAGTTG-----AAAACCATGCA--TTAATG---GCATCCCGTACCAAAAATAAATGATCGTAAAATGACTGATAACCGGCAATAATGATAGTAGCTGCAGCTAGTGTAAGATTAGCGacgaacaaaaagaaatggcGATGGTTGTGAGATCCAACACACTGGTTGATCCAAATACAATGGTGATCCATCCCAAGAACACAT----------------------------------------------------CTCTCACATACAGAGCAATGGTGGGCACGATCACTTTTCCAGTAGTTgcacttttcacaaaatgCATCTCCCTCTTCCTAA----CA
i caeRem4.Crem_Contig15 C 0 I 35
s caeSp111.Scaffold582    415378 367 -   484378 AGAATCACAAACCGTCATAATCGCAAATAATGTCCTGAAGTGGCGCGTTATTCAGAATAGTCGTGCAATACGTTGTTTGAGAAGTATCCTG----AAT--------TAATTCATGCTcg--aagaaaccaaaaaa---caa-----------cataCTGAAAACAAGTGATCGTAGAAAGAAGGGTATCCGGCGATGATGATTGTTCCTGCGGCAAGAGTCAAATTGGCAACAAACAGGAAAAAGTGCCGATGATTGTGTGATCCAACACACTGGTTTATCCAAATGCAATGATGATCCATTCCAAGAACACAT----------------------------------------------------TTCTCACAAACTGAACAATGATGGGCTCTGTCACTCTTCCAATAATTGCACTTCTCACAGAATACATCACCTTCTTCCTG------A
i caeSp111.Scaffold582  C 0 I 13
s caePb3.Scfld02_0       3144591 371 -  4147112 AGAATCACAAACCGTCATAATCGCAAATAATGTCCTGAAGTGGAGCGTTTTCTAGAATCGTCGTGCAGTATGTGTTCGGTGAAGTTTCCTGTGA-GAT--------GATTTTcggtttg--agaaaaaatataaa---caa-----------cTCACTATGAATAAATGGTCCGAAAAGGAAGGGTAGCCGGCAGTAATTATAGTGGCAGCTGCCAAAGTCAGATTGGccacaaagagaaaaaaatggcgaTGGTTATGAGATCCAACACATTGATTAATCCAAATGCAGTGATGATCCATACCAAGAACACAT----------------------------------------------------TTATCACAAACAGAACAATGATGAGCTCGATCACTTTTCCAATAGTTACATTTTTCACAGAACGCGTCTCCTTCCTCCTGA-----A
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18213   136442 440 +   720316 AAAACGACGTACCGTCATAATCGCAAATAACGTTTTGAAGTGGTGCGTTGTCAAGTATAGTCGTGCAATATGTGTTTTCAGATGTTTCCTGCAACC----------AAGTTTGTGATTCCATACAAAGTCTTACG---AAATGATAGTATGAATTACCATAAAAATATGATCATAAAATGACGGATATCCGGCAATGATGATGATTGAAGCTGCCAACGTAAGATTTgcaataaaaagaaagaaatgcCTATGATTGTGCAACCCAACACACTGGTTGATCCATATGCAATGATGATCCATTCCGAGCACACATCTGCAAGAACGGaaaagattaaaaagaaaaagtgctcaaaactactcaaaaCCTCTCGCAAACCGAGCAATGGTGAGCTCGGTCACTTTTCCAGTAGTTGCACTTTTCGCAAAACGCGTCGCCTTCttcctaaaaaaaa
i caeJap4.Scaffold18213 I 84 I 1

a score=-1429.000000
s ce10.chrX              2400650 20 + 17718866 CGTAAAAT------------TTTTTAATCAAA
s cb4.chrX              17154210 18 - 21540570 TGtgaa--------------tttttctgcaaa
i cb4.chrX              I 3 I 4
s caeSp111.Scaffold582    415758 32 -   484378 GGTGAAGATATTCAagtaatttttgtttcaaa
i caeSp111.Scaffold582  I 13 I 8
s caePb3.Scfld02_0       3144976 17 -  4147112 GAtga---------------tttctcatcaaa
i caePb3.Scfld02_0      I 14 I 22
s caeJap4.Scaffold18213   136883 20 +   720316 --------tttttaatt---ttttttttcaa-
i caeJap4.Scaffold18213 I 1 C 0
e caeRem4.Crem_Contig15    15563 35 -  1794024 I

a score=-3599.000000
s ce10.chrX              2400670 11 + 17718866 TGCGTT------CATTT-----
s cb4.chrX              17154232  6 - 21540570 GGAGGA----------------
i cb4.chrX              I 4 I 1
s caeSp111.Scaffold582    415798 17 -   484378 GGCGGTTCTCATCATTT-----
i caeSp111.Scaffold582  I 8 C 0
s caeJap4.Scaffold18213   136903 22 +   720316 tgcacTACGCAGTGTTTCATGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3144993 22 -  4147112 I
e caeRem4.Crem_Contig15    15563 35 -  1794024 I

a score=273.000000
s ce10.chrX              2400681 1 + 17718866 T
s caeSp111.Scaffold582    415815 1 -   484378 T
i caeSp111.Scaffold582  C 0 I 33
s caeJap4.Scaffold18213   136925 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3144993 22 -  4147112 I
e cb4.chrX              17154238 1 - 21540570 I
e caeRem4.Crem_Contig15    15563 35 -  1794024 I

a score=93066.000000
s ce10.chrX              2400682 127 + 17718866 -ACTCACTCCAGGATTTGCAACTGGTGGTATTGTCCTGGCTTTGTAGTAATGATATTGGATGTTGAATAAGAAATACAGGCCGCAAGTGCCGAGCAGCAAGAGTAGCCAGGCAGGTTTGTATCTAAAA
s cb4.chrX              17154239 127 - 21540570 -ACGTACCCCAGGATTAGCAACGGGTGCTATCGTTCTAGCCTTGTAGTAATGATATTGAATATTGATCAGAAAATATATTCCAAAGACACCTAGAGTGATGAGTAGCCATCCTGGTTTGtatctgaaa
i cb4.chrX              I 1 I 3
s caeRem4.Crem_Contig15    15598 127 -  1794024 -ACTCACCCCGGGGTTGACAACTGGCGGTATCGTTCTTGCTTTGTAATAATGATATTGgatattgaacaaaaaatataatccCATCACTCCCAGTGTAACAAGAAACCATACCGGTttgtatctgaaa
i caeRem4.Crem_Contig15 I 35 I 1
s caeSp111.Scaffold582    415849 127 -   484378 -ACTTACTCCAGGATTCGCTACTGGTGGTATCGTTCGTGCTTTGTAGTAGTGATATTGGATATTGAATAAGAAGTAGAGACCAAATACTCCAAGGATTATGAGAAACCATATGGGTTTATATCTGTAA
i caeSp111.Scaffold582  I 33 C 0
s caePb3.Scfld02_0       3145015 127 -  4147112 -acttACACCAGGGCAAGCTACCGGTGGTATCGTTCTTGCTTTGTAATAGTGGTATTGAATATTGAGCAAGAAGTAAAATCCACATATTCCGAGAATGACTAATAGCCACGCAGGTTTGTATCTAAAA
i caePb3.Scfld02_0      I 22 I 72
s caeJap4.Scaffold18213   136926 128 +   720316 AACTTACTCCTGGATTCTGAACAGGCGGAATCGTTCTGGCTTTGTAGTAATGGTACTGGATCATGAAGAGGAAGTAAAACCCGATAACTCCAAGCAGAGCTAGGAACCATGTTGGCTTGTACCTGAAC
i caeJap4.Scaffold18213 C 0 C 0

a score=-618.000000
s ce10.chrX              2400809 3 + 17718866 TAA-
s caeSp111.Scaffold582    415976 2 -   484378 -AA-
i caeSp111.Scaffold582  C 0 I 95
s caeJap4.Scaffold18213   137054 3 +   720316 -GAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e cb4.chrX              17154366 3 - 21540570 I
e caeRem4.Crem_Contig15    15725 1 -  1794024 I

a score=1824.000000
s ce10.chrX              2400812 10 + 17718866 TACAAGTTTT
s cb4.chrX              17154369 10 - 21540570 ttcaaatttt
i cb4.chrX              I 3 I 141
s caeJap4.Scaffold18213   137057  8 +   720316 --CAAGTTTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15725  1 -  1794024 I

a score=-5259.000000
s ce10.chrX              2400822  88 + 17718866 TCGAGAACTGTTAAGTGT-------------------------GAAGGTTGAGTaaaaaatttc----------aaaatgttcag------caaattggtaagccgacaaattg----ccgatttgtcgaatt
s caeRem4.Crem_Contig15    15726  51 -  1794024 ------------------------------------------------ttgattaatCAAATAT----------GAAATGTTTAA-----------TGATAAGCAG-------------CAATTTACTGGATC
i caeRem4.Crem_Contig15 I 1 I 4
s caeJap4.Scaffold18213   137065 132 +   720316 TTGGCTACTGGCTCATATTGTATTACTCACAGTTGCTCGTATggaataatga-taaaaaatgaTGTGAATGCAAGAAATGTTGATATGAAGTAGACGAAGAAGACGAGAaactgaaatttaattttttttttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142  72 -  4147112 I
e cb4.chrX              17154379 141 - 21540570 I
e caeSp111.Scaffold582    415978  95 -   484378 I

a score=-528.000000
s ce10.chrX              2400910 20 + 17718866 t--gccggtaagacggc----aattg
s caeJap4.Scaffold18213   137197 26 +   720316 ttagttgaaaaaataacgtTCAGTTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e cb4.chrX              17154379 141 - 21540570 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777  4 -  1794024 I

a score=-2581.000000
s ce10.chrX              2400930 44 + 17718866 --------------------------------ccaaaattttacgtcgaattgtgtttttgcatttttatttggaa------------------
s cb4.chrX              17154520 30 - 21540570 --------------------------------CCtacatttttcg---------gttt-----tttttgcttgtAA------------------
i cb4.chrX              I 141 I 137
s caeJap4.Scaffold18213   137223 86 +   720316 CCAATTTCCTTTCATGCATAAAAACTATTTGCTCACGATTTTacg---attttcattt-----attttatttacgaGAGCGAGCCTGCctgaaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777  4 -  1794024 I

a score=228.000000
s ce10.chrX              2400974 26 + 17718866 atttcagaatttaaattt----------caatctgc
s caeJap4.Scaffold18213   137309 31 +   720316 atttc-----tcaaattttgcaTGGAGCCAATTtcc
i caeJap4.Scaffold18213 C 0 I 33
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e cb4.chrX              17154550 137 - 21540570 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777  4 -  1794024 I

a score=0.000000
s ce10.chrX              2401000 31 + 17718866 gaaattgtacgcatcctatgaatgttcctac
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeJap4.Scaffold18213   137340 33 +   720316 I
e cb4.chrX              17154550 137 - 21540570 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777  4 -  1794024 I

a score=118.000000
s ce10.chrX              2401031  74 + 17718866 aaagaggca-----------------------cagtttaa-ctgtta-ccgtctttgaaaaaaatc-cctaaaaatatttttggcaaaactgatatccgg
s caeJap4.Scaffold18213   137373 100 +   720316 aaagaagcaaacaattttttatatatattttccaatttaaaCCACTATCCATCGATGAAAGTACTAATCTAGGAagattttaatttaaataaaaatctgT
i caeJap4.Scaffold18213 I 33 I 234
e caePb3.Scfld02_0       3145142  72 -  4147112 I
e cb4.chrX              17154550 137 - 21540570 I
e caeSp111.Scaffold582    415978  95 -   484378 I
e caeRem4.Crem_Contig15    15777   4 -  1794024 I

a score=0.000000
s ce10.chrX              2401105 49 + 17718866 caaatcggcaaaccgacaatctgccgatttgccgaacttgtcgacgaac
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeJap4.Scaffold18213   137473 234 +   720316 I
e cb4.chrX              17154550 137 - 21540570 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777  4 -  1794024 I

a score=-1423.000000
s ce10.chrX              2401154 185 + 17718866 ggcaattgtcgcccacccttggtttgtacATCTTTTTCGTAATTACTACAGTGTTCTCAAAA--TTACCAGAAACTAAACGGGACAGTTTATATATATGTTTTTTTTTTAATTGCATATGCACAAAATTGACAATCGAAGAAAAGTTTCATAA---------AAACAGCGTGGTGTGTTTGACTTTTTATTAATAA
s cb4.chrX              17154687 121 - 21540570 GACAATTG-----------------GGACTTCTTTT--------------GCGCTATCAAGACCTTAGCAAAA----------ACAGTCT-----CACGATTTTTT-------------------AGCTGATAACCG------GTTTTCATAATGCCGGACCAAAAGGACCGGGGTATTGTATCCGGAatta----
i cb4.chrX              I 137 C 0
e caePb3.Scfld02_0       3145142  72 -  4147112 I
e caeJap4.Scaffold18213   137473 234 +   720316 I
e caeSp111.Scaffold582    415978  95 -   484378 I
e caeRem4.Crem_Contig15    15777   4 -  1794024 I

a score=730.000000
s ce10.chrX              2401339 8 + 17718866 TAGTTTTT
s cb4.chrX              17154808 3 - 21540570 -----ttt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   137707 8 +   720316 caattttt
i caeJap4.Scaffold18213 I 234 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeSp111.Scaffold582    415978 95 -   484378 I
e caeRem4.Crem_Contig15    15777 4 -  1794024 I

a score=-380.000000
s ce10.chrX              2401347 4 + 17718866 CAAC
s cb4.chrX              17154811 4 - 21540570 gaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    15781 4 -  1794024 CAAA
i caeRem4.Crem_Contig15 I 4 C 0
s caeJap4.Scaffold18213   137715 4 +   720316 tggt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I
e caeSp111.Scaffold582    415978 95 -   484378 I

a score=1203.000000
s ce10.chrX              2401351 5 + 17718866 AAAAA
s cb4.chrX              17154815 4 - 21540570 -caaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    15785 4 -  1794024 -TGAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    416073 5 -   484378 AAGAA
i caeSp111.Scaffold582  I 95 C 0
s caeJap4.Scaffold18213   137719 5 +   720316 taaaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145142 72 -  4147112 I

a score=44983.000000
s ce10.chrX              2401356 135 + 17718866 AACTCACAGTTGT----------TCATATGGAATGAT---------------TATGAAAAAGGATGTGAAGGCTAGAAATGTGGAGATGAAGTATACGAAGAACACCAGAAACTGAAAAAAAAATAATTTGGTTTAGTGTAAATTTTCACA---------TTT--------TTTGTT
s cb4.chrX              17154820 136 - 21540570 aactcacaactGT----------TCATATGGgataat---------------aatgaaaaatgaggtGAAGGCAAGAAGTGCTGAGATGAAGTAGACGAAGAAGACgaggaactgaaa--------atttgacggATCTGAAGTTTTTGTTTAAGACTCGTTA--------ATTGAT
i cb4.chrX              I 1 I 33
s caeRem4.Crem_Contig15    15790 117 -  1794024 AACTCACAATTGT----------TCGTATGGAATTAT---------------GATAAAAAAGGAAGTGAAGGCAAGGAACGTTGAGATGAAATACACGAAGAGAAccaagaactgaaa--------aatt----------atgttttactt---------ttt--------attgtt
i caeRem4.Crem_Contig15 I 1 I 14
s caeSp111.Scaffold582    416078 142 -   484378 TACTTACAATTGT----------TCGTATggaatgat---------------gatgaaaaaagacgtAAAGGCAAGGAAGGCTGAGATGAAGTACACGAACAGAACGAGGAACTGAAACATGTAT-ATTTGAATATCCGAAAGATTCCCTC---------TTTCAAAGAATATTTCT
i caeSp111.Scaffold582  C 0 I 42
s caePb3.Scfld02_0       3145214 128 -  4147112 AACTCACATTTGT----------TCATAtgggatgat---------------gatgaaaaaagatgtgAAGGCCAGGAACGTTGAGATGAAATAGACGAATAAgacaagaaactgaaaaaacacc-ATTCGAATAGATATAATTTCCTCTC---------TTT--------------
i caePb3.Scfld02_0      I 72 I 515
s caeJap4.Scaffold18213   137724 134 +   720316 tgTTCACGAATATCGcattaaaatcgcacaaaataatctctgatttttggcaaattaaaaaaaattggaagaccacg----------tggagtacacgaa-atggcggaaaattcaaacgtatta-atcc----------attttttcaca---------tct--------tt----
i caeJap4.Scaffold18213 C 0 C 0

a score=-3719.000000
s ce10.chrX              2401491 12 + 17718866 GTTATTGTTTAA
s cb4.chrX              17154989 12 - 21540570 gaaattctgaaa
i cb4.chrX              I 33 I 12
s caeRem4.Crem_Contig15    15921  3 -  1794024 gaa---------
i caeRem4.Crem_Contig15 I 14 I 447
s caeSp111.Scaffold582    416262  7 -   484378 -----gctatca
i caeSp111.Scaffold582  I 42 I 5
s caeJap4.Scaffold18213   137858 12 +   720316 attaccctttcg
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145342 515 -  4147112 I

a score=-14558.000000
s ce10.chrX              2401503  69 + 17718866 CTTA--------------------------------------TCTGCAGATGAGGTTTTTCTCATGTTTCAATTAACCGTGCAATGAATTT---------TTTCAAAGAA----------------GAAGTA----
s cb4.chrX              17155013 132 - 21540570 CACAACTCTCTGCACTGTTTTTCTATTCACACTTTTTCTATTCATACAGTAATAATTTCTCTCAAATTAACTGAAATTATGGCATGAATTCTGACAAATATCGTAAAGAAAATTAGCTCTAATTTTACAGTA----
i cb4.chrX              I 12 I 2
s caeSp111.Scaffold582    416274  56 -   484378 ---------------------------------------cttcccacAAAAATTGCTTctctc-------------------------------------tttcgaaaaaatgtacGTTTTTCTTCGGAGCA----
i caeSp111.Scaffold582  I 5 I 129
s caeJap4.Scaffold18213   137870  93 +   720316 -------------ctaaatttttgaaataatgttTGAAAGATAATGCATAAATAGATATCATTTTGTCaagaaaga-----aaatgaatgg---------ttctgggaaa----------------aaagaaaatc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145342 515 -  4147112 I
e caeRem4.Crem_Contig15    15924 447 -  1794024 I

a score=-10467.000000
s ce10.chrX              2401572  85 + 17718866 TCAGTTCTGGGTTTTCT---TGAGC------------------------------ATA------------TACACCA-AAAATTTAA-------------AATTTC-ATAATAAAT-------------------ACAGGCTTTTAGCGCA------CAAG-----------TACCGAT---GT
s cb4.chrX              17155147 180 - 21540570 CCAATTCTTAGTGTTTT---TCAGctgtca-actttttgaatttttagctacCGTATAACGGAGGGGCGTTACACTatgaaatttgagctcaattatctcaatttctatggaaaatatcagaattatgtccactgacaaaattttggctcaaagtttcaaGTTAGGGGGATCTACTGTTACAGA
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold18213   137963  97 +   720316 gcagccgccggttttctaggccaacagacacacctcgtgtactccttttggttctcta---------------attttttaatttaaa------------aaattc-gccgaaaat--------------------cagttattt---------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145342 515 -  4147112 I
e caeSp111.Scaffold582    416330 129 -   484378 I
e caeRem4.Crem_Contig15    15924 447 -  1794024 I

a score=-425.000000
s ce10.chrX              2401657 11 + 17718866 TTGTGTATTAA
s cb4.chrX              17155327  6 - 21540570 TTttgc-----
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig15    16371 11 -  1794024 ttttgcaatat
i caeRem4.Crem_Contig15 I 447 I 10
s caeJap4.Scaffold18213   138060  7 +   720316 ttgtgcg----
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145342 515 -  4147112 I
e caeSp111.Scaffold582    416330 129 -   484378 I

a score=-24333.000000
s ce10.chrX              2401668  77 + 17718866 TATTGTTTTAGAATAA------TTTTTG-------------CTTATTAAGGCTACTAC-------------------------------ATAAGTAACAAA-----CATATTTATCAATTATAAATTTTCTG
s cb4.chrX              17155352 121 - 21540570 aattgattaatcCACACATTGCTTTTTATTTCCGCCAGATACTCATTTCTATTTCTGCCAGAAAGCGCCATCATTTTCTAGTGACTCCAGCCATCCAAacg--------ttttgat---tttcaatttcctc
i cb4.chrX              I 19 I 45
s caeRem4.Crem_Contig15    16392  68 -  1794024 aatt--ttcaacggca----attttttg------------gctcatttccGTCTTTGC-------------------------------GCAACTCAGAA----------TTTAA-----TTAGAATTCCTG
i caeRem4.Crem_Contig15 I 10 I 12
s caeSp111.Scaffold582    416459  73 -   484378 TATT--CCCGAAAAca------cttttg------------atttgattgaaCTTACAC-------------------------------GAGTTTAAAAAG--------GTTCGGTaagcttaatttttttc
i caeSp111.Scaffold582  I 129 I 20
s caeJap4.Scaffold18213   138067  73 +   720316 ----------------------atttta------------atgtgatattcctAAATCCCGAAAAgtc---------------------acttttaaaaaaatttgcatgtttatttattaacaaaat----
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3145342 515 -  4147112 I

a score=111855.000000
s ce10.chrX              2401745 484 + 17718866  
s cb4.chrX              17155518 546 - 21540570  
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig15    16472 486 -  1794024  
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    416552 522 -   484378  
i caeSp111.Scaffold582  I 20 C 0
s caePb3.Scfld02_0       3145857 498 -  4147112  
i caePb3.Scfld02_0      I 515 C 0
s caeJap4.Scaffold18213   138140 515 +   720316  
i caeJap4.Scaffold18213 C 0 I 3573

a score=6414.000000
s ce10.chrX              2402229 61 + 17718866 GAGTG---GAGAGGCATCGAAGGGTTGCGGACAGCAAAACATTGATGA-GAAA----TCAAGCCGTTCT
s cb4.chrX              17156064 51 - 21540570 ----------------TCTATGTT--GTGGACACCAATACATGGACGACGGAGAACAGAGAGCTGTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    16958 60 -  1794024 GAGTA--GAAGAGACATGCGGAGA--GTGGACACAAAAACATTGATGA-GGAG----TCGAGCCGTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    417074 59 -   484378 GTGTGCGACAGAGACAACGAGAga----ggaaacaaaaacactGGC-C-GGAG---AGCGAGCCGTTC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3146355 61 -  4147112 gagtg---cagagagaaagaagga-agtggacagaaaaacattgatga-gaag---agagGGCCGTTCT
i caePb3.Scfld02_0      C 0 I 1290
e caeJap4.Scaffold18213   138655 3573 +   720316 I

a score=-4044.000000
s ce10.chrX              2402290 19 + 17718866 GTCATTTTTGGCTCTC----ATT-------------
s cb4.chrX              17156115 26 - 21540570 ------TGCTGCCCTC----CTCATTGACTCTTATT
i cb4.chrX              C 0 I 895
s caeRem4.Crem_Contig15    17018 27 -  1794024 ------TTCTACCCTCTCTGCTCTATGCGTCTC---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    417133 15 -   484378 -----TTCCTGCCCTT----CGCG------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3146416 1290 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I

a score=698.000000
s ce10.chrX              2402309 28 + 17718866 CCGTTTATACCCATATAACTCT-AACGTT
s caeRem4.Crem_Contig15    17045 24 -  1794024 CCATTTACGCAC----AACGCT-AACGTT
i caeRem4.Crem_Contig15 C 0 I 829
s caeSp111.Scaffold582    417148 25 -   484378 CCATtcgttttc----acttttcaatgtC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3146416 1290 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I

a score=301.000000
s ce10.chrX              2402337 7 + 17718866 TATTTTA
s caeSp111.Scaffold582    417173 7 -   484378 TTTCTTA
i caeSp111.Scaffold582  C 0 I 878
e caePb3.Scfld02_0       3146416 1290 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I
e caeRem4.Crem_Contig15    17069 829 -  1794024 I

a score=0.000000
s ce10.chrX              2402344 944 + 17718866  
e caePb3.Scfld02_0       3146416 1290 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I
e caeSp111.Scaffold582    417180 878 -   484378 I
e caeRem4.Crem_Contig15    17069 829 -  1794024 I

a score=91.000000
s ce10.chrX              2403288 1 + 17718866 A
s caeRem4.Crem_Contig15    17898 1 -  1794024 A
i caeRem4.Crem_Contig15 I 829 C 0
e caePb3.Scfld02_0       3146416 1290 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I
e caeSp111.Scaffold582    417180 878 -   484378 I

a score=273.000000
s ce10.chrX              2403289 1 + 17718866 T
s caeRem4.Crem_Contig15    17899 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3147706 1 -  4147112 t
i caePb3.Scfld02_0      I 1290 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I
e caeSp111.Scaffold582    417180 878 -   484378 I

a score=544.000000
s ce10.chrX              2403290 58 + 17718866 ------------TTTCACTTTAACTTCCAATTTCTTCT---GCCTCATTTCAATCCAATCCGTCAATC-TACGT
s caeRem4.Crem_Contig15    17900 74 -  1794024 TCTCATCCCACTCccattccttttttcctcattttttcttactctCATTCGTTTCGTGTTACGCCTTCATACGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    418058 61 -   484378 ------------ttcattttgcCATTCCATCTTCTATTCTGCTTCCATTCAATTCTAGCAGCGTCTTT-TACGT
i caeSp111.Scaffold582  I 878 C 0
s caePb3.Scfld02_0       3147707 61 -  4147112 ------------tctttctttctcttccatttgctttttctGCCCCGCGCCAACCGAGCACTGCCTTC-CACGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17156141 895 - 21540570 I

a score=8095.000000
s ce10.chrX              2403348 34 + 17718866 CATATTCTAATTTCCGCGCCTCTGTTTCATTTTC
s cb4.chrX              17157036 34 - 21540570 CACATTTTAATTTCCGCGCCCTTCTCTGTTTCtt
i cb4.chrX              I 895 I 37
s caeRem4.Crem_Contig15    17974 26 -  1794024 CCCATTCTAATTTCCTCGCGTTTCTC--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    418119 27 -   484378 CATATTCTAATTTCCTGCTTACCCTTT-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3147768 33 -  4147112 CATATTCTAATTTCCTTCCCTCACTCTCATTCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I

a score=-5938.000000
s ce10.chrX              2403382 18 + 17718866 CGAAGGCGACAACATTAA------
s caeRem4.Crem_Contig15    18000 20 -  1794024 ----TGCTCGTGTCAAGCTACCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    418146 12 -   484378 ----------AGGCTTGCTATT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3147801 13 -  4147112 ---------AAACATTGACGCc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157070 37 - 21540570 I

a score=19583.000000
s ce10.chrX              2403400 89 + 17718866 GCTTTTGGAAAACAACTGAAAGAATGTGGGTTGTGAGCAACAT---------GAAATTGACGCTGCCTGCTGCTTCATTTTTCGTGCATTCGTTTTGA
s cb4.chrX              17157107 94 - 21540570 Gcgtttcaaaaatagctgc---ATTCTGTATTAAGAGAGACGCTATGTTGGTGAAATTGAGGGT-CTGAGTGCTTCATTTTCCGTACATCCGTTCTGA
i cb4.chrX              I 37 I 4223
s caeRem4.Crem_Contig15    18020 85 -  1794024 GCACTTTCAAAAGAACTGCTCATTTGTTGGTTTTGAGCGACG----------AGAACTGACG---CCGGCTGCTTCATTTTTCGTGCATCCGTTCAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    418158 85 -   484378 -CTCATCGAAATTAACTGCTCAAATGTTGGTTCCTTGCCACAC---------GCGTATGAGG---GTTTTTGCTTCATTCTCCACACATCTATTTTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3147814 85 -  4147112 -ctttttgagaagaactgCTCGAATGTGGTTTTCTGGGAGCAC---------GAAATAGAGG---CCATCTGCTTCTTTACTCGTTCATCGATTCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I

a score=9390.000000
s ce10.chrX              2403489 81 + 17718866 CTACCAGGCACTACCAGGA--------------CGTAGAAGAGCAGCAACGT------CCTATTGATTTTGACCAAACATGTTCTCTGTTGGATAATCGGT
s caeRem4.Crem_Contig15    18105 86 -  1794024 GGACCAGGCACTGCCAGGG--------------CATGGAGGAGAAGCGACGCTGCTGGCTCCTCGATTTTT-CAAGACACTCGCTTGGTTGGATAACTGGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    418243 94 -   484378 GAGTCAGGAACCACTAGGAAGGATGGCACTAGGGATGGCAGAGAAACGTACT------CCAATTCATTTAG-CTCAAAATGTCTTGTTCTTGGTAATTGGT
i caeSp111.Scaffold582  C 0 I 3610
s caePb3.Scfld02_0       3147899 80 -  4147112 GGACCAGGCAATATTGGGA--------------TATGGAGGAGCAACAGCAT------CTTATTGACTTCA-CACAATACCCCCCTTCTCGGATAATTGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I

a score=1088.000000
s ce10.chrX              2403570 12 + 17718866 TTTTTAACACAT
s caeRem4.Crem_Contig15    18191 12 -  1794024 TTATTGGCACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3147979 12 -  4147112 TTTTGGGCATGT
i caePb3.Scfld02_0      C 0 I 1674
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I

a score=295.000000
s ce10.chrX              2403582 25 + 17718866 TTCGGAAT----GTCATTCCGttttttaa
s caeRem4.Crem_Contig15    18203 29 -  1794024 TTTTGGTTTCTCatcgtttcaattttcaa
i caeRem4.Crem_Contig15 C 0 I 1741
e caePb3.Scfld02_0       3147991 1674 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I

a score=0.000000
s ce10.chrX              2403607 1744 + 17718866  
e caePb3.Scfld02_0       3147991 1674 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I
e caeRem4.Crem_Contig15    18232 1741 -  1794024 I

a score=273.000000
s ce10.chrX              2405351 63 + 17718866 GAAATTTTGGCAGACAGTGCACACCGTCATTTAATTGAACTAGATATGACACGTCAGA-------AAAAT
s caeRem4.Crem_Contig15    19973 67 -  1794024 GAGACTACTACAGACAATGTAAAct---atataatttattttcatataaCATACTTAATTTTTACAGCAA
i caeRem4.Crem_Contig15 I 1741 C 0
e caePb3.Scfld02_0       3147991 1674 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I

a score=7002.000000
s ce10.chrX              2405414 295 + 17718866 CCAACAAATCACGGACTTATTTTCTTTTCCCGCCAAAGTGTGCTCATAAAGTACTTCCCCAACTATCGACAAAACGTGTTCGATGAGCTGATGAAGTTTGCAGTTTTAGAGCCAATG-----------ATGGATGAAAAACAACGTTGCGTATATTACACGGTACAG-------TTTTTAAAACTCATCAAAACATACAAGTTTATAATTTTAGTGCCT---CGCTGCAGTGTGTCCCAAAAAGGAGCAACATCACCAGAATAGTAATCCGGAACTTTTCAAACTTCTTTTCAAACGACTCATGAAGTTTCTACCA
s caeRem4.Crem_Contig15    20040 297 -  1794024 CCGGAGAGTCATGCAATGATATTTTTCTCCCGCCAGGCAGCGTTGACAAAGTATGCTCCAGAATACAAAGACAGAGTTCTT--------GAAAGAGTTCTGCGATTTGGAGAAGATAGACTAGAAGTCATGAATGACACTCAATGCCGAGTCTTTTGTTCGGTataaagtctttttttttcagttt------acaaCTAat--agtattttcagattctgtgcACTGTAAGTTATCCAAAAA--GGACATCTCGAAAAGAA-GGGAGCgatgaactttttgagttcTTGTTCAATCGTTTGATGGAATCtttgcca
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3149665 297 -  4147112 CCGAAAAATGAATGGCTTATTTTCTTAACACGCCAATCCACATTAACAAAGTACTATGATGGCTTCAAGAACAGAGCACTC--------GAAAAAGCGCTTCATTTCTTCGATAATG---TGAGCGGCATGActgaaacacaacaaaaagtgtttttctcGGTATGAGCAC---TCGTTAAAgtttagtgaaaaaatcaag--aagaacttCAGGTTGT-CGCATTGCAAAGTAGCCCCAAA--GCCAATTGTAAATTCACTGGAAACGATAAGCTTTTCCGTCATCTTTTCATTCGTTGCATGAGCCTTCTTCCA
i caePb3.Scfld02_0      I 1674 I 2543
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I

a score=1022.000000
s ce10.chrX              2405709 192 + 17718866 GATGTGCACGCAGAAGGGGTTAATTGAAGGATTTATGAGCAAGTAAATCTAATTTAATTT--TTTAATTTCAGATTGACCAAGTGTTTGGTCCATTTGAAATGGTTTTGCACTGTCTGTATAACCTGTACCAAATAGATACAAAATTAAAAGCAGTTATGACTGAAATCGATCCAGACTGGCAAGAAAAGTAAG
s caeRem4.Crem_Contig15    20337 184 -  1794024 aaactgggcaCCAA----------TGATGTATGCAATACAACATCAACCTGTTTTTAATTACGTTTATTTCAGATGAGACAAGAGTTCAACAACATGCAAACCATCTTGTACTGCCTTCATAGCTTATTCTCTATCGATGAACGGCGCAAGGAAATTATGGAACGTCTTGACCCACTCTGGGCTCACAAGTAAG
i caeRem4.Crem_Contig15 C 0 I 1392
e caePb3.Scfld02_0       3149962 2543 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I

a score=0.000000
s ce10.chrX              2405901 1186 + 17718866  
e caePb3.Scfld02_0       3149962 2543 -  4147112 I
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I
e caeRem4.Crem_Contig15    20521 1392 -  1794024 I

a score=715.000000
s ce10.chrX              2407087 240 + 17718866 TTCGTTTTCCGTTGTTTATTGTTTCATTTTTCAATGTTTTCACACCTG-ATCTTCATCTCTTTTTTCATTTCTCTGCGCACACTAAGCACACAACACC---AGCCTTTCTCATCGATTTTTT--------GCGTTGTTCAGCGGAAACTAGCTGTCCAGTCT-GATATATTGTTC-------------TGTATACAAATTTTTA---------------------------------------TCCAAATTG-------TCAATTTCT-AACATATTTT-------------------------GTTGTTACAGTTTTGTTT----TTTTAAAACACGTATC--------
s caePb3.Scfld02_0       3152505 335 -  4147112 ttcatttcccatt---------ctcatttcttaacattt---caactgtattttcatttgttttttc---tctcttcgcTCTACAAACATTTGAAACCCTGACCTgcttccattgattttttcttctctcgcGCAGTTTGTAACAAACTCGCTGTCCAGTTTTAATACACTGTGTGAAATCGCGCACATGCAAACAATTTCTCGACGTAATTATATTTATTGTGGGAACTTTTCCTGTATCATTCCGAACTAACTACgcttaatttttcaatatattgtATCACGTTTGTGACATCAGTTTCTGGTCATTGCAAcgtttttcccgattttttaaCATCTATTTGTACCtg
i caePb3.Scfld02_0      I 2543 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e cb4.chrX              17157201 4223 - 21540570 I
e caeSp111.Scaffold582    418337 3610 -   484378 I
e caeRem4.Crem_Contig15    20521 1392 -  1794024 I

a score=-1984.000000
s ce10.chrX              2407327 48 + 17718866 --ATAAATTTTGTAA--ATAAAAGTTTGAAGCTCAATTT----TCTTG---------------AAGTTTCC-
s cb4.chrX              17161424 51 - 21540570 ATAAAAGTTATAAAATAATAGTAG----GCGcttaatttttccttttc-----------------ttttctc
i cb4.chrX              I 4223 I 1
s caePb3.Scfld02_0       3152840 59 -  4147112 --ataaactttgaaaacatagGAA----------AATTTATTATGTTCCACGCATTCATGGATAACTTTCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I
e caeSp111.Scaffold582    418337 3610 -   484378 I
e caeRem4.Crem_Contig15    20521 1392 -  1794024 I

a score=-8188.000000
s ce10.chrX              2407375 39 + 17718866 ----------TTGAGATT--TTATTTCACTGGT---TTCTAACCTACTGCT--ATT
s cb4.chrX              17161476 41 - 21540570 ----------caaTGGTTGATTTATCCATTCAA---TTCTTACCTAATTTT--ATT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15    21913 42 -  1794024 ----------TTGTGGTT--CTAATCCATTTAATACTTCTCACTCACCTCG--ATT
i caeRem4.Crem_Contig15 I 1392 C 0
s caeSp111.Scaffold582    421947 52 -   484378 TTGTGAATTTGCTCGGTT--ATTTTCCAATcattatctttttcattgctTC--GCC
i caeSp111.Scaffold582  I 3610 C 0
s caePb3.Scfld02_0       3152899 36 -  4147112 ---------CATTCAATT--CCTTTC--ATtgctgttttt-------cttcaaatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   138655 3573 +   720316 I

a score=207647.000000
s ce10.chrX              2407414 351 + 17718866 TA---------CATTTTTGTGAAC--ATTTTCTATTAAAACTCACAACAATTCCAGATGTCCGTCGCCTGGAACGTACAAAACGGAGAGATCGATGCAGTGAAGCAGAGCGTCAACGAGAAGAACGTTCACGAGATCTACAACGGCCGCACCGCCATTCAAATTGCCGCCGACTACGGACAGACTTCTATCATTGCGTATTTGATTAGCATTGGAGCGAATATTCAGGTGAATCAGCACGATATTCAACAATATGCATTT--------ATGTTTGTTGA-----------TTCAGGATAAGGACAAATACGGAATCACACCGCTGTTGTCTGCCGTGTGGGAAGGACATCGCGACGCGGTGAAGCTGCTACTCCAAAACGT
s cb4.chrX              17161517 342 - 21540570 TCGGGAGCATGCAATAattttatctgattttctagaaaaacc--------------aTGTCTGTCGCCTGGGATGTGCAAAACGGTGAGATCGACGCTGTCAAGAAATCGGTCAACGCTGGAAACGTCCACGAAGTGTACAACGGTCGTACTGCTGTTCAAATCGCCGCCGATTATGGACAGACCGCTGTGATTGACTATTTGATCAGCATTGGGGCTAACATCCAGGT---------TTGTAT--ATTAGTAGATTTCAAAT----TGTAGTTGTTGG----------TTTTAGGAGAAGGACAAGTACGGGATCACTCCATTGTTGTCGGCTGTCTGGGAGGGTCATCATGATGCTGTCAAATTGCTTCTTGAGCACGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    21955 343 -  1794024 TC---------CATTGTTACTAATCAACTTGTTGTAGAAAACCAGTA---------ATGTCTGTTGCCTGGAATGTGCAAAACGGAGAGCTCGATGCTGTGAAGCAGACCGTTAATGACCAGAACGTTCATGAGGTCTACAACGGACGGACTGCTGTTCAAATCGCCGCCGACTATGGTCAAACTGCTGTCATCGAGTATTTGATCAGCATTGGAGCTAACATCCAGGT--ATTGTCATTGTA---ATTTGTGAACGTGGCTA----AGCATTTATCGA-----------TTCAGGATAAGGACAAGTACGGAATCACTCCACTGTTGTCCGCAGTCTGGGAAGGCCATATCGATTCGGTCAAATTGCTTCTTCAACACGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    421999 332 -   484378 TC---------CATT-TTACTACTAAACAGTTC------AGTAAGCC---------ATGTCTATTGCCTGGAACATCCAAAACGGTGAGCTCGATGCTGTGAAGCAATCGGTCAAAGAGCAGAACCTTCACGAGGTCTACAATGGACGCACTGCCATTCAAATTGCTGCGGACTACGGACAAACTGCTGTGATGGAGTATTTGATCAGCATCGGAGCCGACGTCCAGGT--------ACCGCGTTTACAAATGGATGTTTTAA-----CATTTTATTGA-----------TTCAGGCCAAGGACAAGTACGGAATCACTCCATTGCTTTCTGCTGTCTGGGAGGGTCACTACGATGCTGTCAAGCTTCTTCTCCAGCATGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3152935 342 -  4147112 tt---------cagT-TTCCTAAtctatgtttt-cagaaagtcaATC---------ATGTCTATCGCTTGGAATGTTCAGAATGGAGAACTCGATGCTGTCAAGCAGTCTGTAAACGAGAAAAACGTGCACGAGATTCACAACGGACGTACTGCCGTTCAAATCGCCGCTGACTATGGTCAAGCTGCTGTCATTGACTATTTGATCAGCATTGGTGCCAACATCCAGGT--AATACCACCATGTTGAGGAA--AACGTTGCAA----TCCGTTTGTTGA-----------TTCAGGAGAAGGACAAGTACGGGATCACTCCATTGCTCTCGGCGGTCTGGGAGGGACACTTCGATGCTGTCAAGCTGCTTCTCCAGCATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   142228 353 +   720316 TA---------GATCtatatgaa---aattttcagaacaac---------------ATGTCTGTGGCGTGGAACGTGCAAAACGGAGAGCTCGACGCGGTCAAGCAAACGGTCAATGAGAAAAATATCCACGAGGTTTACAATGGACGAACGGCTGTTCAAATAGCGGCCGACTACGGTCAAACCGCTGTTATTGACTACTTAATCAGCATTGGTGCCAATATTCAGGT-TAGTTGAATTGTAGTTTTACATGAACAATTACGAGCtacgttttatttaaaatcattattttcagGACAAAGACAAGTACGGAATTACTCCACTTCTCTCGGCGGTCTGGGAAGGACACATTGACTCTGTGAAGCTCCTTCTCCAGCATGT
i caeJap4.Scaffold18213 I 3573 C 0

a score=1503.000000
s ce10.chrX              2407765 3 + 17718866 GAG
s cb4.chrX              17161859 3 - 21540570 GAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    22298 3 -  1794024 AAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    422331 3 -   484378 TAG
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   142581 3 +   720316 AAG
i caeJap4.Scaffold18213 C 0 I 33
e caePb3.Scfld02_0       3153277 0 -  4147112 C

a score=236.000000
s ce10.chrX              2407768 2 + 17718866 TA
s cb4.chrX              17161862 2 - 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    22301 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    422334 2 -   484378 TA
i caeSp111.Scaffold582  C 0 I 43
e caePb3.Scfld02_0       3153277 0 -  4147112 C
e caeJap4.Scaffold18213   142584 33 +   720316 I

a score=-824.000000
s ce10.chrX              2407770 12 + 17718866 TTTTATG--GTGCA--
s cb4.chrX              17161864 12 - 21540570 TTTGA----GAGTATA
i cb4.chrX              C 0 I 373
s caeRem4.Crem_Contig15    22303 14 -  1794024 TCTGATATTGAGCA--
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3153277  0 -  4147112 C
e caeJap4.Scaffold18213   142584 33 +   720316 I
e caeSp111.Scaffold582    422336 43 -   484378 I

a score=251.000000
s ce10.chrX              2407782 4 + 17718866 GTAG
s caeRem4.Crem_Contig15    22317 4 -  1794024 ATAG
i caeRem4.Crem_Contig15 C 0 I 65
e caePb3.Scfld02_0       3153277 0 -  4147112 C
e caeJap4.Scaffold18213   142584 33 +   720316 I
e cb4.chrX              17161876 373 - 21540570 I
e caeSp111.Scaffold582    422336 43 -   484378 I

a score=0.000000
s ce10.chrX              2407786 1208 + 17718866  
e caePb3.Scfld02_0       3153277    0 -  4147112 C
e caeJap4.Scaffold18213   142584   33 +   720316 I
e cb4.chrX              17161876  373 - 21540570 I
e caeSp111.Scaffold582    422336   43 -   484378 I
e caeRem4.Crem_Contig15    22321   65 -  1794024 I

a score=362.000000
s ce10.chrX              2408994 65 + 17718866 AAGTTTTA--TTAGATACAAGCTTTTTTGAAGTTTAAAAAAATTACATAATATTCATATATCAGTTG
s caePb3.Scfld02_0       3153277 55 -  4147112 AAGTTTGAATTTGGATGCAAACGTTTCtata-tttgatgaaattttat--------tgaatcaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   142584 33 +   720316 I
e cb4.chrX              17161876 373 - 21540570 I
e caeSp111.Scaffold582    422336 43 -   484378 I
e caeRem4.Crem_Contig15    22321 65 -  1794024 I

a score=300.000000
s ce10.chrX              2409059 1 + 17718866 C
s cb4.chrX              17162249 1 - 21540570 C
i cb4.chrX              I 373 C 0
s caePb3.Scfld02_0       3153332 1 -  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   142584 33 +   720316 I
e caeSp111.Scaffold582    422336 43 -   484378 I
e caeRem4.Crem_Contig15    22321 65 -  1794024 I

a score=910.000000
s ce10.chrX              2409060 1 + 17718866 T
s cb4.chrX              17162250 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    22386 1 -  1794024 T
i caeRem4.Crem_Contig15 I 65 C 0
s caeSp111.Scaffold582    422379 1 -   484378 T
i caeSp111.Scaffold582  I 43 C 0
s caePb3.Scfld02_0       3153333 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   142584 33 +   720316 I

a score=94013.000000
s ce10.chrX              2409061 828 + 17718866  
s cb4.chrX              17162251 887 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    22387 719 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    422380 755 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3153334 806 -  4147112  
i caePb3.Scfld02_0      C 0 I 50
s caeJap4.Scaffold18213   142617 807 +   720316  
i caeJap4.Scaffold18213 I 33 C 0

a score=-1185.000000
s ce10.chrX              2409889 13 + 17718866 AAAAAAACCTTTT------------
s cb4.chrX              17163138 13 - 21540570 GAAAATACATTTT------------
i cb4.chrX              C 0 I 103
s caeSp111.Scaffold582    423135  5 -   484378 aaaaa--------------------
i caeSp111.Scaffold582  C 0 I 26
s caeJap4.Scaffold18213   143424 24 +   720316 -aaaatgtttttcgtttaatttttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3154140 50 -  4147112 I
e caeRem4.Crem_Contig15    23106  0 -  1794024 C

a score=-709.000000
s ce10.chrX              2409902 29 + 17718866 TGGGGTACATGGCAAGGAT-----AAAC---------AGCGGT
s caeJap4.Scaffold18213   143448 43 +   720316 taaagcatgtGAGGAGTATTTTTGGAACGTTTTCTCcagtttc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3154140 50 -  4147112 I
e cb4.chrX              17163151 103 - 21540570 I
e caeSp111.Scaffold582    423140 26 -   484378 I
e caeRem4.Crem_Contig15    23106  0 -  1794024 C

a score=-12566.000000
s ce10.chrX              2409931 62 + 17718866 AAAGAGATGTAGATTTT-ATCGATTTTCGCA-ATATCGGGATGTATGGAAAATGGAGAAAATGA
s caeRem4.Crem_Contig15    23106 18 -  1794024 ----------------------------------------------GGATGTGGGCAAAGAAGA
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    423166 56 -   484378 CGAATGTTGCAAATCT------AGCCGCTTG-GTTATTGAAT-CAATAATTATtgtgaaaagaa
i caeSp111.Scaffold582  I 26 I 3
s caePb3.Scfld02_0       3154190 45 -  4147112 AGAGAGATATTGATTT-------TCCGCGCG------------CGAGAGAAAGGGCGAGAAAAA
i caePb3.Scfld02_0      I 50 I 3
s caeJap4.Scaffold18213   143491 64 +   720316 aaaaatataattatttgaaattatccatttttgatattaaatgtgcagaaaatatttaaaaagc
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17163151 103 - 21540570 I

a score=-16140.000000
s ce10.chrX              2409993 50 + 17718866 GGAAATA---------TTTACAA-------------------------ACTTTTATATTGTTGCCAA---AACTAATAGTTAAGAAA
s cb4.chrX              17163254 73 - 21540570 GAAACTACTGC-----ATTTTCGACTGCTACCGCTGCTGCCAATTGCCAATTTTGCTTCGTT---------CTGCATTAGTAAAAAC
i cb4.chrX              I 103 C 0
s caeSp111.Scaffold582    423225 43 -   484378 aaaagta---------attgT-----------------------TAGTAAATTTAAATaat------------gaattgaaacaaat
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3154238 57 -  4147112 GAGAATGCCGAGTAACATTGTAG---------------------CATTACTTTAAAACCATt---------aggaataagaaaaaag
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   143555 51 +   720316 ------------------------------------agagaaaatttcagtttttgaaTATAATCTATCTGcacaatggaaaaaaaa
i caeJap4.Scaffold18213 C 0 I 469
e caeRem4.Crem_Contig15    23124  7 -  1794024 I

a score=191385.000000
s ce10.chrX              2410043 411 + 17718866 TGTGTCTAGATATTCAA------AAATTAACAAAATAATTCTAATA-TTTCAGTCCACAAAACCAGATGCTCGAGGAACAATGCAATATACAATGCCGGGTATCAAGGAAGACTTTATTCGTAGTCCAATTGAACATCGTTACCAAG--------TACGTCATTATGC---AACTTTGTCATATCAATACGTTCAATT---TTCCAGGACACGTTCAACAAATTTTTTCCCTCCTACGACCTTGACCTTAATCAGCGAGGGTTGATATGGTTTCTTGTGAGTACACTACGTAACTAATAACACAAGT-----------ATAACATGTTCAGAAAAAAGGCCTTTTGGAAGCAGCTTTAAATGGAACATCTGATATGCTGACATGGCTAGGACAAGGAAAAGATAAAGCTGGAAGGCCGTCGGAAATTAATCAAATATGCATGG
s cb4.chrX              17163327 353 - 21540570 CGGC-------------------AAAT--AGCataaaattg-ggaa-tttcagactacaaaaccAGAAACTCGTGGAACTATGCAGTACACAATGCCAGgaataaaagaagaattcaTCAGAAGTCCCATTGATCATCGGTATCAAG----------AAACATTTACA---------------------------------------------------AAATTCTTCCCCTCTTATGACCTTGACCTGAACCAGAAAGGATTGATTTGGTTTATTGTGAGTTCTTCATCTTAAACATAATTTGAACCAAAAtg----gt-attt-ttcagaagaaaggAGTACTAGAAGGAGCGCTCAATGGAACATCTGACATGCTAGCTTGGCTTGGACAGGGGAAAGATAAAGCTGGAAGACCTTCAGAAATCACGCAAGTCACTATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    23131 391 -  1794024 ------------------------------TTATATAATCC-GTTA-TTTCAGTCAACAAAACCAGAGACCCGCGGATCCATGCATTATACAATGCCTGGTATCAAAGAAGAGTTTGTTCGTAGCCCGATTGATCATCGATTTCAAGTATGTCGTCtacacattttca---gtcattttcgaaagaatt------------ttccAGGATTCATTCAATAAATTCTTTACTTCATATGATCTTGATCTCAACCAACGTGGTCTGGTTTGGTTTATCGTGAGTTTAATTCTTCAACGATAATCCAATTAATACTG----ATAATGT-TTTAGAAGAAAGGAATATTGGAAGGAGCTTTGAATGGTACATCTGACATGCTGACATGGCTTGGACAAGGAAAGGATAAATCTGGTAGACCTTCAGAAGTGACGCAGATTACTATGG
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    423268 419 -   484378 tattttccattatttATAA----AAGTTAACCACAAAACTG-ACTATATTCAGAGTACAAAGCCGGAAACCCGAGGAACAATGCAATATACTATGCCTGGAATAAAAGAGGAATTTATTCGGAGCCCTATTGATCATCGATACCAAG--------CAAGtcaaacact----tttttatcaggaacatttgaaagttt---ttccaGGACACATTCGccaaattcttttcttcgtttgaTTTGGATCTCAATCAACGAGGTTTGGTTTGGTTTATTGTGAGTTCAATACGTCAACAATTATCAGCAATTAATTG----ACATTGTGTTAAGAAGAAAGGGTTGCTGGAAGCAGCTCTCAATGGAACTTCTGACATGTTAACATGGCTGGGACAAGGAAAAGATAAAGCTGGACGACCTTCCGAACTGACTCAAATTACAATGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3154295 405 -  4147112 agtttcagatt------------gaataaaatataaaaatg------tttcaggcAACAAAACCAGAAGCAAGAGGTACAATGCAATACACTATGCCAGGAATAAAAGAAGACTTCATCCGTAGCCCGATTGATCATCGATATCAAG--------TTAGACTGTTCCT---ACTGTTTTCACGA--ATTTATTATTCTCCATTTCAGGAAACATTCACAAAGTTCTTCACTTCTTATGATCTTGATGTCAACCAACGTGGGCTAGTATGGTTCATTGTTAGTTCATT---TCCCAGATTCATAACGATAATCTC----ATgatttgttcagaaaaaaggtttacTAGATGCTGCTTTAAATGGAACATCAGACATGTTAACATGGCTAGGACAAGGGAAAGATAAATCTGGAAGACCATCGGAATTAACTCAACTTACTATGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   144075 422 +   720316 ----tgcggctagataaaaactgtaactaaaaataaaatat-t----ttccaGGCAACCAGAAAAGAAGGACACGGAACAATGCACTACACGATGCCTGGCATAAAAGAAGAGTTTGTCAGAAGCCCAATTGATCATCGATTTCAGG--------CactacaaacaaacaaacatttttcctATCAAAAGACACATTT---TTCCAGGACACGTTCAACAAATTCTTCCCTCGTTTTGATCTTGATCTAAATCAGAGAGGTTTGGTATGGTTTATTGTGAGTTCACTACGTAAGAAGTTGTCAATTTTTAACAACGGCATTGATT-TTCAGAAGAAAGGGCTCTTCGAAGCTGCTCTGAATGGAACGTCGGACATATTGACATGGCTGGGACAGGGGAAAGATAGAGCAGGCAGAACTTCGGAAATAACACAAATTGGTATGG
i caeJap4.Scaffold18213 I 469 C 0

a score=2910.000000
s ce10.chrX              2410454 3 + 17718866 AGG
s caeRem4.Crem_Contig15    23522 3 -  1794024 AGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423687 3 -   484378 AGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3154700 3 -  4147112 AGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   144497 3 +   720316 AGG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17163680 0 - 21540570 C

a score=546.000000
s ce10.chrX              2410457 1 + 17718866 T
s caeRem4.Crem_Contig15    23525 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423690 1 -   484378 T
i caeSp111.Scaffold582  C 0 I 55
s caePb3.Scfld02_0       3154703 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   144500 0 +   720316 C
e cb4.chrX              17163680 0 - 21540570 C

a score=305.000000
s ce10.chrX              2410458 3 + 17718866 TAG
s caeRem4.Crem_Contig15    23526 3 -  1794024 AAG
i caeRem4.Crem_Contig15 C 0 I 61
s caePb3.Scfld02_0       3154704 3 -  4147112 GAG
i caePb3.Scfld02_0      C 0 I 107
e caeJap4.Scaffold18213   144500 0 +   720316 C
e cb4.chrX              17163680 0 - 21540570 C
e caeSp111.Scaffold582    423691 55 -   484378 I

a score=0.000000
s ce10.chrX              2410461 481 + 17718866 TAACttaaaagaggagtaacggttctgactattttttatagaaaaaatagaaaaaaataaggaaaaaatgtgctcaattgaacgactttcaaaattaaaagttttaaaaaattgtcaaaatttttttataacggttcaaaatgccaaaaaaggggctagtttttcctaaagcctcaatttttgtatatttttttgtggtacaaaaaatggccaaagttggttccctatcggcttcaaatataccttaattaacaaaataacgtgagataaacgacctatatatgtagaataaaaaatcaaaattccaaaaaaaatttagaccacttttttttaatttttgaatcgccataaaaattgagaaattttttttgagaagtatcattttgaaatatgttaatttgagcacatattaagtgtatactttaaaaCAGAAAACCCATAACCAGTACTCATCTTTCAAAAAACTACCTGTAAATTTAGA
e caePb3.Scfld02_0       3154707 107 -  4147112 I
e caeJap4.Scaffold18213   144500   0 +   720316 C
e cb4.chrX              17163680   0 - 21540570 C
e caeSp111.Scaffold582    423691  55 -   484378 I
e caeRem4.Crem_Contig15    23529  61 -  1794024 I

a score=-597.000000
s ce10.chrX              2410942 28 + 17718866 TGATATACAATTTTTTAACT---GTATCA----------------TA
s caeJap4.Scaffold18213   144500 47 +   720316 TAGGATAAATTATTTTGATTTGGATGTCAAGTCATTAATCTGAACTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3154707 107 -  4147112 I
e cb4.chrX              17163680  0 - 21540570 C
e caeSp111.Scaffold582    423691 55 -   484378 I
e caeRem4.Crem_Contig15    23529 61 -  1794024 I

a score=273.000000
s ce10.chrX              2410970 1 + 17718866 T
s caePb3.Scfld02_0       3154814 1 -  4147112 t
i caePb3.Scfld02_0      I 107 C 0
s caeJap4.Scaffold18213   144547 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17163680 0 - 21540570 C
e caeSp111.Scaffold582    423691 55 -   484378 I
e caeRem4.Crem_Contig15    23529 61 -  1794024 I

a score=546.000000
s ce10.chrX              2410971 1 + 17718866 T
s caeRem4.Crem_Contig15    23590 1 -  1794024 t
i caeRem4.Crem_Contig15 I 61 C 0
s caePb3.Scfld02_0       3154815 1 -  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   144548 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17163680 0 - 21540570 C
e caeSp111.Scaffold582    423691 55 -   484378 I

a score=1100.000000
s ce10.chrX              2410972 3 + 17718866 TTC
s caeRem4.Crem_Contig15    23591 3 -  1794024 tgc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423746 3 -   484378 ttC
i caeSp111.Scaffold582  I 55 C 0
s caePb3.Scfld02_0       3154816 3 -  4147112 ttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   144549 3 +   720316 TTG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17163680 0 - 21540570 C

a score=329973.000000
s ce10.chrX              2410975 487 + 17718866  
s cb4.chrX              17163680 457 - 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15    23594 478 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    423749 478 -   484378  
i caeSp111.Scaffold582  C 0 I 31
s caePb3.Scfld02_0       3154819 474 -  4147112  
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18213   144552 539 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=67.000000
s ce10.chrX              2411462 1 + 17718866 T
s cb4.chrX              17164141 1 - 21540570 C
i cb4.chrX              I 4 I 28
s caePb3.Scfld02_0       3155307 1 -  4147112 T
i caePb3.Scfld02_0      I 14 I 5
s caeJap4.Scaffold18213   145091 1 +   720316 c
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    424227 31 -   484378 I
e caeRem4.Crem_Contig15    24072 11 -  1794024 I

a score=-2894.000000
s ce10.chrX              2411463 27 + 17718866 --------GAAAAGAAAAATAAATTAATGATCTTA---
s caeRem4.Crem_Contig15    24083 20 -  1794024 --------gaaaaaaaacgTCGAGTGAG----------
i caeRem4.Crem_Contig15 I 11 I 1
s caePb3.Scfld02_0       3155313  9 -  4147112 --------GAAAAGAAT---------------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   145092 38 +   720316 aacattttgaaaattatggcagaaaaatgatgaTTGTA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17164142 28 - 21540570 I
e caeSp111.Scaffold582    424227 31 -   484378 I

a score=125807.000000
s ce10.chrX              2411490 207 + 17718866 -TTTAGGAATATCAAATCTCAATGACTATGTTGAACAAAGTTCGAGAGGAGACTAAAAACAATGAAGAAAAAACTGCTCTGTCCAGAGCTTTGATGAGAATGGCAATGCAAGCTGGCGACGAGAAAGCAATGAATATTTATGCAGAAGAAGCAAATAAACTTTCCAATGGTACCAATGCAATGACAGTTCACAAGTTTGTG-----------------CAACAAA
s cb4.chrX              17164170 224 - 21540570 -TTCAGGAGTACAAAATTGCTATCAAAACGTTGGACAAAGCACGTCAAGAGACGAAGAATCAAGAGGAGAAGGTGGTTTTGACTCGAGCACTGATGAGAATGGCGATGCAAGCCGGGGATGAGAAGGCTATGCATTATTTCGCTGAGAAAGCAAGTCATTTGTCTAATGGGACTAATTTGATGATTGTGCATAAGTGAGTATTGGACGAAAACTTGAGAAACACA
i cb4.chrX              I 28 I 15
s caeRem4.Crem_Contig15    24104 200 -  1794024 -TTCAGGAATATAAAATCTCTATCAAAATGCTAGACAAAGTGCGTCAAGAAACTAAAAACCAAGAAGAGAAGATTATCCTGACTAGAGCTTTGATGAGGATGGCAATGCAAGCTGGAGATGAGAAGGCAATGAACTATTTTGCTGAAAAGGCGAATAATATATCTTCTGGGACCAATGAAATGATCGTCCATAAGTGAGTA------------------------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    424258 206 -   484378 -TTTAGGAGTATAAAATATCAATCCGAATGTTGGACAAAGTACGGCAGGAGACAAGAAACCAGCAAGAGAAAATCATATTGACAAGAGCTTTAATGCGAATGGCGATGCAAGCTGGAGACGAGAAAGCTATGAAccattttgcagaaaaagcGAATAACTTGTCTTCCacttcaaatgaaatgattatTCACAAGTAATTG------------------GATAGA
i caeSp111.Scaffold582  I 31 I 1
s caePb3.Scfld02_0       3155322 206 -  4147112 -TTTAGGAATACAAAATGTcagtcaaaattttggataaaGTGCGGCAAGAAACTAACGATAAGGAAGAGCAAACAGTTTTGACAAGGGCATTGATGCGAATGGGTATGCAAGCTGGAGACGAAAAAGCAATGAATTTCTTCGCGGAAAAGGCTAACAATCTGTCAGCAACTTCTAATGAAATGATAATTCATAAGTAAGAT------------------AACAGa
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18213   145130 218 +   720316 TTATAGGAGTACAAAATTTCTATGACCATGCTTGGAAAAGTTCGAAGTGAAACAAAGGACCCACAAGAGAAGAATATTCTGACAAGAGCGCTTATTAGAATGGCAATGCAAGCTGGGGATGAGAAAGCCATGAATTTTTACGTGGAAAAAGCAAGCAATCAGACAGCTGGTTCAAATGAACTCCTGCTTCATAAGTATGGA-------ATTTATTAATTAGCAAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-19531.000000
s ce10.chrX              2411697  33 + 17718866 TTTTTATT-----------------------------------------------------------CTCTGATTTTGTTTTA-------------------------TTTCAACTG---------
s cb4.chrX              17164409 117 - 21540570 CGTTTAGTTTTGTAAAATTGAACGTTTAGTTTTgtaaaatcggcaaatagcggGAAAACTActgatttccaaaaactatGTGAATCTTGAAAGCCCAGCTCctgactcctgaaaatg---------
i cb4.chrX              I 15 I 64
s caeRem4.Crem_Contig15    24304  16 -  1794024 -------------------------------------------------------------------TCCAAAG----------------------------------TTGAAAATG---------
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    424465  15 -   484378 -----------------------------------------------------------------------------GTATGA-------------------------TTTTGAACg---------
i caeSp111.Scaffold582  I 1 I 7
s caeJap4.Scaffold18213   145348  25 +   720316 -----------------------------------------------------------------------------------------------------TTAAGATTTTTaagtgataattttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3155528  22 -  4147112 I

a score=94223.000000
s ce10.chrX              2411730 181 + 17718866 TTTTCAGAGCTATGAGGAGTATATTCCTGGGCTCGAACAATCACGCCAACGAATACATTGCTCGCATTCCAATCACAGACGATCA------AACTCCGCAATACATCAACACAAAAGCGTTGATTCAGTTGTACACTGGACGGGCGGTAGACGCTGTTAAAACTATCACTCAAATCAAGCCGGTTAG--
s cb4.chrX              17164590 179 - 21540570 attccagagcCATGAGAAGTATTTTCTTGGGATCAAACAATCACGCACAAGATTACATAGGAAGAATAAAAGAGAATGAGGATCA------AACGCCACAATTCCTGAATACAAAATCGATTATTCAACTGTATACAGGAAGAGCGAGAGATGCTGTGGAGACAATCAGTATGATCCGACCGGT--G--
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig15    24337 185 -  1794024 GTTTTAGAGCAATGAGAAGTATATTCCTCGGATCCAACAATCATGCTTATGAGTACATCTCGAGGGTTCCAATAACTGATGATTCTGCGGTCACGcctcaatttttaaacacgAAAGCAATGATTCAACTGTACAGTGGAAAAGCCGTAGATGCTGTCAGAACTGTTTGCCTGGTCAAACcggt--g--
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    424487 179 -   484378 atttcagagCGATGCGGAGCATTTTTAGTGGATCCAACGGCCATGCGAATGAATACATCTCAAGAATCCCTGAAGCTGACGACAA------TACTCCTCAATATATTAACACTAAAGCAATGGTTCAATTATATACAGGGAGAGCAGTGGAAGCAGTAAAAACAGTGACTCGTATCAAACCAGT--t--
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3155550 179 -  4147112 TATTCAGGGCAATGAGGAGTATATTCATTGGTTCAACCGGTCATGCTAACGATTACATAAACAGGATTACAGCAACAGAAAATCC------AACTCCACAATATATTAACACAAAGGCTATAGTTCAATTATACACTGGAAGAGCTGTGGATGCCGTAAAAACTGTTTCGCTTATAAAACCAGT--G--
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold18213   145373 181 +   720316 ttttcagagctaTGAAAAGTATATTTTTGGGTTCAAACGGCCACGCACAAGAATACATTTCAAGAATTTCACCAAAAGAGTGCCA------AGGAGCGCAGTATATTAATACAAAAGGCATAATCCAGTTGTACACCGGCAAAGCCGTGGAGGCAGTAGACACAGTGTCTCAAATTAAACcagt--aag
i caeJap4.Scaffold18213 C 0 I 53

a score=-943.000000
s ce10.chrX              2411911 6 + 17718866 AGTT--TT-
s cb4.chrX              17164769 6 - 21540570 AGTT--GC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    24522 6 -  1794024 agat--tt-
i caeRem4.Crem_Contig15 C 0 I 56
s caeSp111.Scaffold582    424666 9 -   484378 agtttattt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3155729 7 -  4147112 AGTT--TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   145554 53 +   720316 I

a score=-1785.000000
s ce10.chrX              2411917 3 + 17718866 AAA--
s cb4.chrX              17164775 3 - 21540570 --ATG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    424675 2 -   484378 -ga--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3155736 2 -  4147112 -AA--
i caePb3.Scfld02_0      C 0 I 137
e caeJap4.Scaffold18213   145554 53 +   720316 I
e caeRem4.Crem_Contig15    24528 56 -  1794024 I

a score=-1064.000000
s ce10.chrX              2411920 11 + 17718866 ACTACATTATC-----
s cb4.chrX              17164778 11 - 21540570 -----CTTGTTttgcc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    424677 11 -   484378 aaaaaatcatc-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554 53 +   720316 I
e caeRem4.Crem_Contig15    24528 56 -  1794024 I

a score=-4121.000000
s ce10.chrX              2411931 638 + 17718866  
s cb4.chrX              17164789 456 - 21540570  
i cb4.chrX              C 0 I 13
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554  53 +   720316 I
e caeSp111.Scaffold582    424688   0 -   484378 C
e caeRem4.Crem_Contig15    24528  56 -  1794024 I

a score=0.000000
s ce10.chrX              2412569 48 + 17718866 TGGAGGAGTGTCCCATAGCAATTGGGTGCACTGTATATGTCTGTGAAA
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554 53 +   720316 I
e cb4.chrX              17165245 13 - 21540570 I
e caeSp111.Scaffold582    424688  0 -   484378 C
e caeRem4.Crem_Contig15    24528 56 -  1794024 I

a score=-32.000000
s ce10.chrX              2412617 2 + 17718866 AA
s cb4.chrX              17165258 2 - 21540570 AT
i cb4.chrX              I 13 C 0
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554 53 +   720316 I
e caeSp111.Scaffold582    424688 0 -   484378 C
e caeRem4.Crem_Contig15    24528 56 -  1794024 I

a score=846.000000
s ce10.chrX              2412619 3 + 17718866 TCA
s cb4.chrX              17165260 3 - 21540570 TCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    24584 3 -  1794024 tca
i caeRem4.Crem_Contig15 I 56 C 0
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554 53 +   720316 I
e caeSp111.Scaffold582    424688 0 -   484378 C

a score=-46.000000
s ce10.chrX              2412622 7 + 17718866 AACTTCG
s cb4.chrX              17165263 7 - 21540570 AACTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    24587 7 -  1794024 acatttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    424688 7 -   484378 agCCTAA
i caeSp111.Scaffold582  C 0 I 5
e caePb3.Scfld02_0       3155738 137 -  4147112 I
e caeJap4.Scaffold18213   145554 53 +   720316 I

a score=-1021.000000
s ce10.chrX              2412629 6 + 17718866 GTTTA---T
s cb4.chrX              17165270 3 - 21540570 ---TC---C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    24594 6 -  1794024 ---ttttgc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    424700 6 -   484378 ctttt---c
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3155875 6 -  4147112 gtttt---c
i caePb3.Scfld02_0      I 137 C 0
e caeJap4.Scaffold18213   145554 53 +   720316 I

a score=75012.000000
s ce10.chrX              2412635 93 + 17718866 AGATTCTACCTGGCCCAACAACTACAAACCTGAGAACGATTGCTGAACTTTGCTACTCAACAGCGGCTAAAGATGAACTTCTGATCAGATGAA
s cb4.chrX              17165273 93 - 21540570 AGATTGTGCCTGGTCCCACCACCACAAACCTGAAAACTATTGCTGAACTATGCTATTCCACAGCCGCAAAGGATGAACTTCTCATTAGATAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    24600 93 -  1794024 agattatCCCTGGTCCAACTACTACAAATTTGAAGACAATTGCTGAGTTGTGCTATTCGACTGCAACAAAAGATGAGCTTATGATATGATGGA
i caeRem4.Crem_Contig15 C 0 I 25
s caeSp111.Scaffold582    424706 93 -   484378 agataattcCTGGTCCAACAACGACAAATCTCAAAACAATTGCGGAACTATGTTATTCAACTGCAGCAAAAGATGAACTACTCATCAGATAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3155881 88 -  4147112 agattattcCTGGACCAACAACtacaaatctgaaaacgatTGCCGAGTTGTGCTATTCTACTGCGGCGAAAGATGAACTACTCATCCG-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   145607 93 +   720316 agaTTACCCCAGGACCAACAACTGCAAACTTGAAAACTATTGCGGAGCTGTGCTACTCTACAGCGGCAAAAGATGAGCTCCTTATATAATTAG
i caeJap4.Scaffold18213 I 53 C 0

a score=-6483.000000
s ce10.chrX              2412728 19 + 17718866 ---CATGAT------CATGAAAAAGAAA
s cb4.chrX              17165366  2 - 21540570 --------------------------AA
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold582    424799 17 -   484378 ----GCTAT-------TTTACCAGCAAA
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3155969 12 -  4147112 ----------------TTGATCGGCCAA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   145700 28 +   720316 AAAGGTTAcgtagaaattgaaaaaaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    24693 25 -  1794024 I

a score=156779.000000
s ce10.chrX              2412747 561 + 17718866  
s cb4.chrX              17165373 547 - 21540570  
i cb4.chrX              I 5 I 33
s caeRem4.Crem_Contig15    24718 560 -  1794024  
i caeRem4.Crem_Contig15 I 25 I 11
s caeSp111.Scaffold582    424823 693 -   484378  
i caeSp111.Scaffold582  I 7 I 12
s caePb3.Scfld02_0       3155986 546 -  4147112  
i caePb3.Scfld02_0      I 5 I 12
s caeJap4.Scaffold18213   145728 605 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-3545.000000
s ce10.chrX              2413308 22 + 17718866 ------------------------GAATAGAGGATAGGAAAACGAG----------------
s caeRem4.Crem_Contig15    25289 22 -  1794024 ------------------------aatagaataaTGTGAAAGAAGA----------------
i caeRem4.Crem_Contig15 I 11 I 1
s caeSp111.Scaffold582    425528 22 -   484378 ------------------------aaacagataacacaataaaaaa----------------
i caeSp111.Scaffold582  I 12 I 5
s caePb3.Scfld02_0       3156544 22 -  4147112 ------------------------aaaaaaattattcaataaaaag----------------
i caePb3.Scfld02_0      I 12 I 5
s caeJap4.Scaffold18213   146333 62 +   720316 aaacaaagaaatgaaaacattggaaattaaacaatgaaatgTGGAACCGACCCAAGGATGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17165920 33 - 21540570 I

a score=111479.000000
s ce10.chrX              2413330 223 + 17718866 TAACAGATT--------TAC-CGAGTATCTGCATATCCCGAAACAAAACAGA----G---------GCGGCGC-GCGATGAGCCCATTTTATTGCTCATAACACTAATTGAGTTGGTCCACGCCCATATGTGTCCCTTTT-GCACGCT----------GGCCGCCA--CTAAAGGATTACCTTTTTCAAGTGTTTTAT-TAGTAAGACATTGTAATTGGACTTTATTGCACATAC--AGAAAAGATACTCGTAATAAAAGGA
s cb4.chrX              17165953 233 - 21540570 TGATAGATTGTCTTTTCTTG-AAG-------------TGAAAATGAATTAGATCCTGAATCTAGAGGGGAAGG-GCGATGTG-CAATTTTATTGCTCATAACACTAATTGAGTTGGCCCATGTCCATATgggtctctttt-tttcgcgCATTTGCCGCCGCTGCCA--CTAGGGGATTACCTATTTTGAATGGTGGTC---GGAAGACATTGTAATACGATTTTATTACG-------AGAAAAGACAAAAGAAACAATAAGA
i cb4.chrX              I 33 I 552
s caeRem4.Crem_Contig15    25312 201 -  1794024 TAACAGATT--------TTG-GAACCatc--------taaaaatgaattaga----aACACT----GGGCGGC-GCGATGAG-CCATTTTATTGCTCATAACACTAATTGAGTTGGACCATGGCCATATGTGTCCCTTTC-TCGAG------------CGCCGCCA--CTAGGGGATTACCTATTTCAAGTGGTAGT-------AGACAATGCAATACGACTTTATtaca-------agaaaag-----agaaacaataAGG
i caeRem4.Crem_Contig15 I 1 I 20
s caeSp111.Scaffold582    425555 207 -   484378 tgacaGATT--------TCGTGGACCatc-------ctgaaaatgaattaga----aACCCG----AGGCGGC-GCTTCGAG-CCATTTTATTGCTCATAACACTAATTGAGTTGGCCGACGCCCATATGTGTCCCTTTTCTCGCGGAT---------CGCCGCCA--CTTGGCTATTACCTTTTTCGAGTGGTAGA-------AGATATTGTAATCCGACTTTATTACa-------agacaaa-----agaaacaaaggGA
i caeSp111.Scaffold582  I 5 I 21
s caePb3.Scfld02_0       3156571 206 -  4147112 taactgATT--------TAA-GGACCATC-------TCCAAAATGAATTAGA----AACACT----GGGCGGC-GCATCGAG-CCATTTTATTGCTCATAACACTAATTGAGTTGGCCCATGCCCATATGTGTCCCTTTT-TCGCGCG----------CGCCGCCACTCTTGAGTATTACCTATTTCAAGTGGAAAA-------GGATATTGTAATCCGACTTTATTACA-------AGACAAA-----AGAAACAGAGGGA
i caePb3.Scfld02_0      I 5 I 20
s caeJap4.Scaffold18213   146395 221 +   720316 TAACAGATT--------TGC-GGACCATC-------TTCGGA--GAAATAGA----AGCGCT----GGGCGGCGGCGACGAG-CCATTTTATTGCTCATAACACTAATTGAGTTGGTCTAGTCCCATATGTGTCTCTTTT-TCGCG------------CGCCGCCACACCACACCA-TACCTTTTTCAAGTGGTTGTTCTTGCAAAGAGGGGTAATTCGACTTTATTGCATAGACGACGATAAAACACCCGTTTTAGAATGG
i caeJap4.Scaffold18213 C 0 C 0

a score=2910.000000
s ce10.chrX              2413553 3 + 17718866 CAC
s caeRem4.Crem_Contig15    25533 3 -  1794024 CAC
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    425783 3 -   484378 CAC
i caeSp111.Scaffold582  I 21 C 0
s caePb3.Scfld02_0       3156797 3 -  4147112 CAC
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18213   146616 3 +   720316 CAC
i caeJap4.Scaffold18213 C 0 I 65
e cb4.chrX              17166186 552 - 21540570 I

a score=1208.000000
s ce10.chrX              2413556 4 + 17718866 TGGA
s caeRem4.Crem_Contig15    25536 4 -  1794024 CGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    425786 4 -   484378 GGGA
i caeSp111.Scaffold582  C 0 I 96
s caePb3.Scfld02_0       3156800 4 -  4147112 AGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   146619 65 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I

a score=-1780.000000
s ce10.chrX              2413560 1 + 17718866 --A
s caeRem4.Crem_Contig15    25540 1 -  1794024 -A-
i caeRem4.Crem_Contig15 C 0 I 89
s caePb3.Scfld02_0       3156804 1 -  4147112 C--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   146619 65 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    425790 96 -   484378 I

a score=191.000000
s ce10.chrX              2413561 2 + 17718866 GA
s caePb3.Scfld02_0       3156805 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold18213   146619 65 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    425790 96 -   484378 I
e caeRem4.Crem_Contig15    25541 89 -  1794024 I

a score=0.000000
s ce10.chrX              2413563 409 + 17718866 AAATAAAGATTTCGGAATTTTAGTTGTGGTTTAGCGCCAGTGGGTTTTTTTCTGAACTTTTATATttttttaaaattgcctgtaaaaggtttggcaaattgccaaattaaaaaaaaagagcttttaatcctttagaatgttttaacacaaacgattagaacaaaataaaagtataaacatcgtccaaaaaagttttatttttattttttaaattacaagtggcaaactggataattgttactttttgtcagtaaattaaaactttccaagttttttaaaaattgtactatgatatttggctagttttgcaccatagaagtagttttaaacactgtccccactggcgctacttcacatttaaAAACTTAAAATCAGAATAAGTATAATGCTTCAAATACTTTTTTAGTGC
e caePb3.Scfld02_0       3156807  44 -  4147112 I
e caeJap4.Scaffold18213   146619  65 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    425790  96 -   484378 I
e caeRem4.Crem_Contig15    25541  89 -  1794024 I

a score=363.000000
s ce10.chrX              2413972 82 + 17718866 AAGAAATCCCGTTGGAATCACACTGGGAATGTAAATATCGGTCAACGAATTGTAAATAAAAAATATCAATCAAAAGAATAGC
s caePb3.Scfld02_0       3156851 40 -  4147112 aacaaATCCCGTTAGAACAAAACTggga------------------------taaaaataaaat------------------
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold18213   146619 65 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    425790 96 -   484378 I
e caeRem4.Crem_Contig15    25541 89 -  1794024 I

a score=160.000000
s ce10.chrX              2414054 3 + 17718866 TGC
s caeJap4.Scaffold18213   146684 3 +   720316 TGT
i caeJap4.Scaffold18213 I 65 C 0
e caePb3.Scfld02_0       3156891 0 -  4147112 C
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    425790 96 -   484378 I
e caeRem4.Crem_Contig15    25541 89 -  1794024 I

a score=94906.000000
s ce10.chrX              2414057 215 + 17718866 TAGTATTGGAAGGCTGTGTTCTCATAAGCTGAAACAGAATTTGATCGTTTCGTCCGTCGAAAGGTGTTTCCATTGGTTTTTGTGCCATTTGTAAGTTTAGGAGCATCTTGCTTAACACCATTTGTATGA------AAACCATTTGGAACGACTTGTTGGGATTGTTTCATTTCAAGTTCTTCTTGCTCTTTTTCAGCGGCTTTTCTTGCTTTCCTTCTGAA
s caeRem4.Crem_Contig15    25630 212 -  1794024 TAGTACTGGAACGCTGTGTTTTCATAAGTCGCAACAGAATTTGACCGTTTGATCCGTTGAACAGCATTTCCGTTTCCATTGACGCCGTTTGTAGTTTTCGGAGCGTCTTGCTTCAGACCATTCTGATGT------ATTCCGTTAGGAATTACTTGCTGAA---TCTTCATTTCTatctgttctttttctttttctgaagcTAGTCGTGCTTTTCTCCTGAA
i caeRem4.Crem_Contig15 I 89 C 0
s caeSp111.Scaffold582    425886 212 -   484378 TAATACTGAAATGCAGTATTTTCATATGCCGAAACAGAATTAGATCGTTTTGTCCGTTGAACAGCATTTCCGTTTCCATTTGTACCATTAACTGTTTTTGGACCGTCCTGTTTGATTCCGTTTTGATGA------ACACCATTTGGAATCACTTGTTGaa---tcttcatttcaatttgctctttctctttttctgctgcTTTCCGGGCTTTCCGTCTGAA
i caeSp111.Scaffold582  I 96 I 30
s caePb3.Scfld02_0       3156891 212 -  4147112 cagtACTGGAATGCCGTATTTTCATATGCTGACACGGAGTTAGAACGTTTTATTCGCTGAACAGCAGTTCCATTTCCATTGGTgccattcagtttttgtgaaacttcttGCTTGACTCCGTTTGTATGG------ACACCATTTGGAATAACTTGCTGAA---CTTTCAATTCTATctgttccttttctttctcagCTGCTTTCCGGgcttttcttctgaa
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold18213   146687 209 +   720316 TAGTACTGGAATGCGGTGTTTTCATAATTTGCTACTGAATTTGATCTTTTTATCCTCTGTATGGCTGTTCCACT---------GTTATCTGCAGATTTTGGAGCATCTCGTTTGATGCCATTGTGATTGTGGTTCACACCATTTGAAATGCTTTGCTGGG---CTTTCATCTCGATTTGTTGTTGCTCTTTTTCCGTTGCCAATCGTGCTTTCCGTCTGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17166186 552 - 21540570 I

a score=-702.000000
s ce10.chrX              2414272 9 + 17718866 CAGTGGATT
s caeRem4.Crem_Contig15    25842 9 -  1794024 ATTAGTTAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   146896 9 +   720316 AATTGAACT
i caeJap4.Scaffold18213 C 0 I 20
e caePb3.Scfld02_0       3157103 34 -  4147112 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    426098 30 -   484378 I

a score=629.000000
s ce10.chrX              2414281 22 + 17718866 TTTAAATTAATGATAGCTTGGC
s caeRem4.Crem_Contig15    25851 22 -  1794024 TTTAAAGGAGTTTCAGTTTTGC
i caeRem4.Crem_Contig15 C 0 I 1
e caePb3.Scfld02_0       3157103 34 -  4147112 I
e caeJap4.Scaffold18213   146905 20 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    426098 30 -   484378 I

a score=0.000000
s ce10.chrX              2414303 448 + 17718866 ATTTAGAGCAATCTTCTCGCTCAAATTAATGAAGGGTACTTGTGTAGTTAAATGGCCCAAACTAACAAGTTTTCAGTTCATTTCTTTTGAATTGATAATTTACTTGAAAAGTGAAATTGATTTGCATTTTTAGGCCTAGAGAAATTCCTAAAGTAAGCCTAACGTTGTCAAAAATGGTCACGTAAAATTTTTAACAAGGCTAACATTTTTGTGCCAGGTATGCTACGCATGTACCTAACTTTGATAGACACTTGGCAAAGACATGGTCAGACTTGATTCAGGCTGTGCCCACGTTTAGCTCAAGTTGAGCTAAGTCAACGACATAAAAAAAGTTCGGGGCAAAATTATACTTGAACACAGCCTGAGCCCAGTCTTGCCCAAAATTTTACCAACTTCGGGAGAAGAACCTTACTTTAAATGCCAAGATTCTATCTGAAAAAAGTATTCC
e caePb3.Scfld02_0       3157103  34 -  4147112 I
e caeJap4.Scaffold18213   146905  20 +   720316 I
e cb4.chrX              17166186 552 - 21540570 I
e caeSp111.Scaffold582    426098  30 -   484378 I
e caeRem4.Crem_Contig15    25873   1 -  1794024 I

a score=613.000000
s ce10.chrX              2414751 2 + 17718866 AA
s caeSp111.Scaffold582    426128 2 -   484378 aa
i caeSp111.Scaffold582  I 30 C 0
s caePb3.Scfld02_0       3157137 2 -  4147112 AG
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold18213   146925 2 +   720316 AG
i caeJap4.Scaffold18213 I 20 C 0
e cb4.chrX              17166186 552 - 21540570 I
e caeRem4.Crem_Contig15    25873 1 -  1794024 I

a score=1304.000000
s ce10.chrX              2414753 4 + 17718866 ACAT
s caeRem4.Crem_Contig15    25874 4 -  1794024 ACAT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    426130 4 -   484378 acaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3157139 4 -  4147112 ACGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   146927 4 +   720316 ACTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17166186 552 - 21540570 I

a score=192090.000000
s ce10.chrX              2414757 212 + 17718866 ACTTATAATAATAGTATTCAAATGCCAAAGTGACTATGGAAAGTGCAATGCCGGCTAGAATAACGATGAATACACCTCCAATGTTTTGAATCGAAATGCCATCACTTTCATCCGATGAGTCAGGGCAGGAGACTTTATTCGGGTTATCTGTCCACCATTTCTCCTTTAATGTTTCCAGACGACGTTCATTGAGTAGCATCAAAATTCTGCAA
s cb4.chrX              17166738 211 - 21540570 ACTTGTAGTAATAATATTCGAATGCAAGTGTGATAATAGAAAGTGCGATTCCAGCCAGGATAACAATAAATACTCCTCCAATATTTTGAATGGAAATGCCATCTGATTCATCAGACGAATCGGGACAGTTGACTTTGTTGGGATTATCGGTCCACCATTTCTCTTTCAATGTTTCCAATCGCCTTTGGTTGAGGAGCatcagaattctgaa-
i cb4.chrX              I 552 C 0
s caeRem4.Crem_Contig15    25878 212 -  1794024 ACTTATAGTAGTAGTATTCAAATGCGAGTGTAATAATAGATAACGCAATTCCAGCCAAAATAACAATAAACACTCCACCAATGTTTTGTATCGAAATACCATCACTCTCATCAGAGGAATCCGGACAATTGACTCTGTTAGGGTTATCCGTCCACCACTTTTCTTTTAAGGTTTCCAGTCTTCTTTGATTCAATAGCATGAGTATTCTGAAA
i caeRem4.Crem_Contig15 C 0 I 469
s caeSp111.Scaffold582    426134 212 -   484378 acttgTAGTAGTAATATTCAAATGCCAGTGTGACAATAGATAATGCAATCCCAGCTAGAATAACAATGAATACACCTCCAATGTTCTGGATAGATATTCCGTCACTTTCATCAGATGAATCTGGACAGTTGACTTTATTTGGATTGTCCGTccaccatttttcttttaatgtTTCCAGACGCCTCTGATTCAATAACatcaatattctgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3157143 212 -  4147112 ACTTATAATAGTAATATTCAAAAGCAAGTGTGATGATGGATAATGCAATTCCTGCGAGAATAACAATGAATACTCCACCAATGTTCTGGATAGAAATTCCATCACTTTCATCGGACGAGTCAGGACAGGATACTTTATTCGGGTTATCTGTCCACCATTTTTCTTTTAGCGTTTCTAATCTTCTCTGGTTTAACAACATCAAAATCCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   146931 212 +   720316 ACTTGTAATAGTAGTATTCAAATGCGAGTGTGATAATTGACAGTACTATTCCGGCGAGAATAACTATGAAAACTCCTCCGATGTTTTGAATTGATATTCCGTCGCTTTCATCGGATGAATCCGGGCACGTCACTTTGTTTGGATTATCTGTCCACCACTTTTCTTTTAATGTTTCAAGACGTCGTTGATTTAAAAGcattaaaattctgaaa
i caeJap4.Scaffold18213 C 0 I 9

a score=-8987.000000
s ce10.chrX              2414969 39 + 17718866 GACTCC---------TTGTTTTTTGAATATGTAGGTATGATGTATTTT
s cb4.chrX              17166949 20 - 21540570 -----------------ttttttccaaa-----------ttaaattta
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold582    426346 30 -   484378 -tcttcAGT------TCACTTTTCGAAT-----------CTATAATGT
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3157355 30 -  4147112 -ACGCCcatc----ataactttttga-------------ttaagTTTG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   147152 28 +   720316 ---------gaaacataatTTTCTCAAG-----------ATAAATAGT
i caeJap4.Scaffold18213 I 9 C 0
e caeRem4.Crem_Contig15    26090 469 -  1794024 I

a score=384938.000000
s ce10.chrX              2415008 544 + 17718866  
s cb4.chrX              17166984 492 - 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15    26559 545 -  1794024  
i caeRem4.Crem_Contig15 I 469 C 0
s caeSp111.Scaffold582    426381 533 -   484378  
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3157390 538 -  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   147180 544 +   720316  
i caeJap4.Scaffold18213 C 0 I 26

a score=-8382.000000
s ce10.chrX              2415552 39 + 17718866 AATAAAAAAGTCTGAATTTACTCAAAGTATATCTTAAAG
s cb4.chrX              17167476 32 - 21540570 -aataatttatttgtat------ATTTTTACCTGTTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    27104 29 -  1794024 -ATACAAATCTCTG---------ATTGTTTCTTGTATAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    426914 29 -   484378 CAGAGAGAATTTT----------CTCAATCACCAGCAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3157928 29 -  4147112 CAGTAAGTCATAT----------ATCGAAGATTGAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   147724 26 +   720316 I

a score=121933.000000
s ce10.chrX              2415591 147 + 17718866 TCAAAT-------CACCTGATTGGTTGTTCCAGGCGTGAAACTGTTAGAAACGCTGCCAGATTTGCTGTGTATGATGCAATTATAATAAATCCAAAAAGCCACCATGTTGCAGCAACCAAACGGCCGGAAATATTTTTTGGTGCTTCTCCGCCT
s cb4.chrX              17167508 154 - 21540570 ACTGATTGTGGGATACCTAATAGGTTGTTCTAGACGTGAAACGGTCAGGAAAGCAGCCAAGTTAGCAGTATAGGATGCGATTATGATGAAACCAAAAAGCCACCAAGTCGCAGCTACAAGCCGCccggaaatattttttggagcTTCACCGCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    27133 147 -  1794024 AATTAT-------TACCTGATAGGTTGTTCCAGACGAGAGACAGTCAAGAATGCAGCGAGGTTAGCAGTGTATGAAGCAATAATAATGAATCCAAACAGCCACCACGTAGCGGCTACTAATCGGCCAGATATGTTTTTCGGGGCTTCACCACCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    426943 147 -   484378 AAGTAT------GTACCTGATAGGTTGTTCCAATCGAGAAACTGTCAA-AAAGCAGCGAGATTAGCAGTGTAAGAAGCAATGATAATGAAACCAAAAAGCCACCAAGTGGCAGCAACCAGTCGGCcggaaatatttttcggaGCTTCCCCGCCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3157957 148 -  4147112 CTGGCT------GTACCTTATTGGCTGTTCTAATCGGGAAACAGTCAAGAAAGCAGCAAGATTAGCAGTGTAAGATGCAATGATGATGAAGCCAAAAAGCCACCAAGTTGCAGCAACAAGTCTCCCGGAAATGTTTTTCGGGGCTTCGCCACCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   147750 147 +   720316 -------TCGACAAACCTTATTGGCTGTTCGAGtcgagaaactgtcaaaaacgCAGCTAGATTGGCAGTGTATGACGCAATAATAATGAATCCAAAGAGCCACCAAGTTGCAGCTACTAGTCGACcggaaatgttttttgggGCTTCGCCACCC
i caeJap4.Scaffold18213 I 26 C 0

a score=1814.000000
s ce10.chrX              2415738 6 + 17718866 CCTAAA-
s cb4.chrX              17167662 6 - 21540570 CCTGAa-
i cb4.chrX              C 0 I 25
s caeSp111.Scaffold582    427090 6 -   484378 CCTCAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3158105 6 -  4147112 CCTTGA-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   147897 7 +   720316 cctgaaa
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=1918.000000
s ce10.chrX              2415744 11 + 17718866 AATATGAATAT
s caeSp111.Scaffold582    427096 11 -   484378 AACATAATTAT
i caeSp111.Scaffold582  C 0 I 40
s caePb3.Scfld02_0       3158114 11 -  4147112 AATATACTTAT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   147904 11 +   720316 aaagcaaaaat
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17167668 25 - 21540570 I
e caeRem4.Crem_Contig15    27280  0 -  1794024 C

a score=-495.000000
s ce10.chrX              2415755 6 + 17718866 TATTTT--
s caePb3.Scfld02_0       3158125 6 -  4147112 tatatt--
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18213   147915 8 +   720316 catGATTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17167668 25 - 21540570 I
e caeSp111.Scaffold582    427107 40 -   484378 I
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=455.000000
s ce10.chrX              2415761 175 + 17718866 AAAGATATGAGTAGCGCCA--Gaatatcatattttaaa----aaaattcaaaa-------------------------aaag---------tttttaaatttcatatg--attttttgaaaatcaaaaaaaaatctcgCTGAA---CTTCG----ATTTTGCGACAGTGCTATAGCTTACTCCCAAAGTGGTAATTAC-----ACGTTTTAACTCAATAAAAATTTTTA
s caeJap4.Scaffold18213   147923 229 +   720316 AGGAAAATAATCAAAGCAAATGAGCATCTTCTATTCAATAGTAGaactaaacattttttcaactcTGTTTCGGCTGGTAAAGCTCCACCCACTTTCAAGTTCTTTATGCCAATTTGAGAATatcaaaaatagattttttaaaaagtttttgcgACATTTTGTATCAATGCCAAGTCTGACTAGTAAAGCACCAACCAtcagaaacattttttcttctccaaaattttta
i caeJap4.Scaffold18213 C 0 I 964
e caePb3.Scfld02_0       3158131  35 -  4147112 I
e cb4.chrX              17167668  25 - 21540570 I
e caeSp111.Scaffold582    427107  40 -   484378 I
e caeRem4.Crem_Contig15    27280   0 -  1794024 C

a score=0.000000
s ce10.chrX              2415936 532 + 17718866  
e caePb3.Scfld02_0       3158131  35 -  4147112 I
e caeJap4.Scaffold18213   148152 964 +   720316 I
e cb4.chrX              17167668  25 - 21540570 I
e caeSp111.Scaffold582    427107  40 -   484378 I
e caeRem4.Crem_Contig15    27280   0 -  1794024 C

a score=428.000000
s ce10.chrX              2416468 8 + 17718866 TAACCCCA
s cb4.chrX              17167693 8 - 21540570 TACCTCCA
i cb4.chrX              I 25 C 0
e caePb3.Scfld02_0       3158131 35 -  4147112 I
e caeJap4.Scaffold18213   148152 964 +   720316 I
e caeSp111.Scaffold582    427107 40 -   484378 I
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=-1869.000000
s ce10.chrX              2416476 2 + 17718866 ----TA
s cb4.chrX              17167701 1 - 21540570 --T---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    427147 4 -   484378 TATG--
i caeSp111.Scaffold582  I 40 C 0
e caePb3.Scfld02_0       3158131 35 -  4147112 I
e caeJap4.Scaffold18213   148152 964 +   720316 I
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=60.000000
s ce10.chrX              2416478 2 + 17718866 AG
s caeJap4.Scaffold18213   149116 2 +   720316 AA
i caeJap4.Scaffold18213 I 964 C 0
e caePb3.Scfld02_0       3158131 35 -  4147112 I
e cb4.chrX              17167702 0 - 21540570 C
e caeSp111.Scaffold582    427151 0 -   484378 C
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=1364.000000
s ce10.chrX              2416480 4 + 17718866 CTTA
s cb4.chrX              17167702 4 - 21540570 CTAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    427151 4 -   484378 CAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3158166 4 -  4147112 cTCA
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18213   149118 4 +   720316 CTTA
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    27280 0 -  1794024 C

a score=535267.000000
s ce10.chrX              2416484 583 + 17718866  
s cb4.chrX              17167706 585 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    27280 588 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 24
s caeSp111.Scaffold582    427155 582 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3158170 582 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   149122 579 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-9214.000000
s ce10.chrX              2417067 26 + 17718866 CATATTGT--GTTTTTGAAATTAGT--TCG
s cb4.chrX              17168291 21 - 21540570 -----GAT--TATTTTGAAACCTTT--TGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    427737 17 -   484378 ----TA---------GGAAAACAGTGATAA
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3158752 22 -  4147112 ----CCAT--TTTGTGGAACACAAT--CCG
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   149701 23 +   720316 CGTTTCGTTAtatttagaaatga-------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    27868 24 -  1794024 I

a score=78634.000000
s ce10.chrX              2417093 236 + 17718866 AATATTATC------AACCCACGATTAGAGTCACTACTCGGAAAATATTCAGGTTTCGAACATCAACTTGAAGAGTTCCATACATAACTGATAACTTTGAAATGGGACTCCACACACCG----------------------------------------------------------------------------ACTTCTTTGTTGAAAAGCGCGTCTTCATGATCTCTATCTCTATCTATTTTGTATATTCTAACTTCAACGTCCTGTAAGAA-----TTTAATTCGGGAGTTTGTCG------------------------------------------------GTATTTAATCTAT--------------------------------------------------TATAGAATGT
s cb4.chrX              17168312 340 - 21540570 AATAGTGTACATTCAGACTTACAATCAGAGTGACCACCCTaaatatattcaaatttcggacGTCTACTTGTAACGTCCCGTACATGACGGATAGTTTGGAGAGGGGTGTCCAAACTCCG----------------------------------------------------------------------------ACTTCTTTGTTGAACAGGGCATCCTCGTGTTCTCGGTTTCTATCAATTTTGTAGATTCTCACTTGTACATCctagaattt-----taagaattacAGTTTTTCCGtggatttttgatcatttcgcCCGTTTTCAGAGAGCTGGAGCCCGGctatcaagtttccaatcactttcaaaattttggaggatgtaaaagAAACCAAGATTGAAATTGCtgcattcataga
i cb4.chrX              C 0 I 178
s caeRem4.Crem_Contig15    27892 256 -  1794024 GGCAGT---------GACTTACTATCAATGTGACTActcgaaaaatgttcagaCTTCTGACATCCACTTGAAGTGTTCCATACATAACTGACAATTTGTTTATAGGTGTCCAGATTCCAACCT----------------AAACCGTTATCATTTtcgttttac----tttt--------------ttgtgcACCTACTTCTTTGTTAAATAGAGCATCTTCATGATCTCGATCTCGATCGATTTTATAAATTCTTACTTCCACACTctaaaacat-------------------------------------------------------------------------tcaattttcttaac-------------------------------------------------TATTGATGGG
i caeRem4.Crem_Contig15 I 24 I 3
s caeSp111.Scaffold582    427760 259 -   484378 GATAG----------AACTTACTATCAGAGTAACAACacgaaaaatgttcaaattcCGTACATCAACTTGTAGTGTTCCATACATGACggataattttgaagttgGCGTCCATACTCCCACCT----------------AAAATCTTTTTGCGTTAGATTCCTAGAAAATT--------------CTAAGAA---ACCTCTTTGTTGAACAGCGCATCTTCATGGTCTCTATCTCTGTCAATTTTGTAGATTCTGACTtccaaattctgaaaatg-----aacga---------------------------------------------------------------TAA-ATTAAATAT--------------------------------------------------GATCAAAAGT
i caeSp111.Scaffold582  I 6 I 5
s caePb3.Scfld02_0       3158780 260 -  4147112 GGGAA----------AGCTTACAATTAGGGTTACTactcgaaaaatgttcaagtttCGGACGTCTACTTGTAACGTCCCATACATGACAGAGAGTTTTGCAAGAGGGGTCCAAACTCCGACCTG---------------AAAATATCTGT---TTAGAAATGTAGCATTTCAA------------TTAGAAA---ACCTCTTTGTTGAAAAGTGCATCTTCATGATCTCGGTCTCTATCAATTTTGTATATTCGTACTTCGATATTCTGAAAGTA-----taata---------------------------------------------------------------tgattttttctat--------------------------------------------------tatcGATAGT
i caePb3.Scfld02_0      I 6 I 5
s caeJap4.Scaffold18213   149724 297 +   720316 aaaaaaatg------cacttaCTATCAGTGTGACAACTCTAAAGATGTTCAAATTTCTAACGTCCACTTCTAAAGTTCCATAGAGAACTGATAGTTTAGTCAGAGGCGTCCAAACACCGACCtgtatcaataaaaaaaaaaaataagaactgcttaaaattataaaatttaaaaaatgaagtttttcaAGCAC--ACCTCTTTATTGAAAAGTGCATCTTCGTGGTTTTTATCTctgtcaattttaaaaatccggACTTCAACATTCTaaaaaaaGGATTTAACA---------------------------------------------------------------CGACATTGACAAT--------------------------------------------------CATTCAA---
i caeJap4.Scaffold18213 C 0 C 0

a score=186874.000000
s ce10.chrX              2417329 228 + 17718866 TACTTGAAAAAACATATTTAGTCCTGCTTCCGTGTAATTTCCATATTCATGAGCAGGATCATTCAAGATAATATCTCTCACAGTTGTAGTGATGTTTGGTTCAGATGGTCCCGTTTGGCATGTGAATGTTGGAAGCACATCGAATGTTGCATTCATTGTTCGGATCGTTTCAAATGCATAACCCATGACATTCATATAAAACGCAACGTTCAGCTGGAAAAAAAAAGA
s cb4.chrX              17168830 224 - 21540570 TACCTGGAAAAACACATTATTCCCTGTCTCCGAGTAATTTCCATATTCATGAGCCGGATCGCCCAAAATCACTTCTCTCACTGTAGTCGTGATATTTGGCTCGGATGGTCCCGCTTCACAAGTGAACGTTGGAAGAACATCAAATGTTGCATTCATCTGTTTTATGGTCTCAAATGCATATCCCATTACATTCATATAGAATGCAACATTAAGCTGC----AAAAAAG
i cb4.chrX              I 178 C 0
s caeRem4.Crem_Contig15    28151 221 -  1794024 TACCTGGAAAAACacattgttttctgtttctgtaTAATTTCCATATTCATGTGCCGGattattcaaaataacttCTCGTACTGTCGTTGTTATATTTGATTCCGAGGGACCTGCTTCACATGTAAAAGTCGGAAGAACATCAAATGTAGCATTCATCTCTCTTATTGTTTCAAATGCATATCCCATGACATTCATATAAAATGCAACATTCAACTGC-------AAAG
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    428024 220 -   484378 GACCTGGAAGAACAAGTTTGGACTTGATTCCGTATAGTTTCCATATTCATGTGCAGGATCATTTAGTACAACTTCtcttactgtagttgtgATATTTGGTTCAGATGGTCCCGCTTCACAAGTAAAAGTTGGAAGAACATCGAATGTTGCATTCATCTCTCTTATGGTTTCAAATGCATATCCCATGACATTCATATAAAAAGCGAcattcaactga------aaa--
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3159045 222 -  4147112 CACCTGAAAAAAGACGTTCCCATCTGATTCCGTATAGTTTCCATATTCATGTGCTGgatcattcaaaatgatttctcTCACTGTTGTTGTTATGTTTGCCTCGGAAGGTCCCGCTTCGCATGTGAAAGTTGGAAGAACATCGAATGTGGCATTCATTTCTCTTATGGTTTCAAATGCATATCCCATGACATTCATATAAAATGCCAcattcaactaa------aaaag
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   150021 227 +   720316 -ACCTGGAAAAACAAATTGTATCCGTATTCAGTGTAATTTCCATATTCTTGAGCTGCATTGTGGAGGATAACATCTCTAACGGTAGTAGTTATATTAACTTCAGATGGTCCAGCTTGACAAGTGAATGTTGGCAGAACATCAAAAGTCGCATTCATCTCACGAATTGTCTCGAAAGCATATTCCATTACGTTCATATAAAAAGCAACATTTAActgaaacaaacaaaa
i caeJap4.Scaffold18213 C 0 I 35

a score=-3785.000000
s ce10.chrX              2417557 34 + 17718866 CCACGTGGT-GAA------------GTTAGCGAAGCGTTCATCACAA----
s cb4.chrX              17169054 39 - 21540570 TCACGTGGG-TTC--------ttcctccaaaaaaaaattt---gaaagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    28372 44 -  1794024 TCACGTGGT-TTCgcaaagtttttgttttcaaaaaaattt------agttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    428244 43 -   484378 -cacgtggt-ttt------tattagtttctcgagagtttttcgaaaagttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3159267 39 -  4147112 tcACGTGGTATGG------TGTATGTtttgcaaaagtttttt------ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   150248 35 +   720316 I

a score=203648.000000
s ce10.chrX              2417591 297 + 17718866 ACCGAGTCCCAACCATTAATCGAGTAATCCAACTCTAATCCAATTTCATTTCTAAACAAATAGTCATCCAGATCTCGAATTTCCATGAGTTTTCCAACTGGAAACGGGCGAAGCCAAAACATAAATGCGGATTCGCAACTGTCACACTTGAAAGCTGTGATATCCTGAAAGTACACGTTTT---GTGGAAACA--AAA-----------TTGTGGAAACATAGTACAAAGCAAACATTTAG---AAAAAACCCCCCACTGACCTTTGTAAGAACATATGTGTTGAAAACTCTTTGCTCTATGAAATCAGCAGCCTG
s cb4.chrX              17169093 267 - 21540570 accGAGTCCCATCCATTAATCGAGTAATCCAATTCTAATCCAATTTCGTTTCTGAACAAATAGTCGTCcaaatctcgaatttccatTATTTTGCCGACTGGAAACGGGCGCAACCAAAACATAAACGCCGACTCGCAACTGTCGCATTTGAACGCGGTAATGTcctgaaaact------------ggaaaatg--aga--------------aagaaaagCTGAATATT--------CGAG---AGCTGA----------ACCTTTGTAAGCACATAAATGTTAAAAATCCGTTGTTCGATGTAGTCAGATgactg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    28416 264 -  1794024 acCGAATCCCAACCGTTGATCGAGTAATCCAATTCTAATccaatttcatttctgaacAAATAATCGTCCAAATCTCGAACttccattatttttccaaCTGGAAATGGACGCAACCAAAACATAAGTGCAGATTCACAGCTATCACATTTGAAAGCAGTGATGTCCTGAAACAC------------GGAAAATT--AG-----------------TGAATGCAGgataaa--------ttga---aataaa----------acctTTGTGAGAACATATATGTTGAAAACTCGTTGTTCAATGTAGTCTGCTGCCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    428287 263 -   484378 acCGAGTCCCAACCATTAATAGAGTAATCCAACTCTaatccaatttcatttctgaacAAATAGTCATCCAAATCTCGaatttccattatttttccGACTGGAAACGGCCGCATCCAAAACATAAGTGCAGATTCACAGCTATCGCATTTGAAAGCGGTGATGTCctacaaca---------------aaaaca--ag--------------------aactgAGATAAA--------TTGA---TGGAGATTGAT-----ACCTTTGTCAGAACATACATATTGAAAACACGTTGATCGATATAATCAGCTGCCTG
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3159306 265 -  4147112 accgtgTCCCAACCATTAATCGAGTAATCCAATTCTAATCCAATTTCGTTTCTGAACAAATAGTCATCTAAATCTCgaatttccattatttttccaaCTGGGAATGGGCGCAACCAAAACATGAGTGCAGACTCACAACTATCACACTTGAAAGCTGTTATGtcctaaaaac---------------aaaatgttag--------------------aATTGGGAAATA--------TTTG---AAGGAATGATC-----ACTTTTGTCAAGACATAAATATTGAAAACCCGTTGTTGAATATAATCAGCAGCCTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   150283 301 +   720316 actGTGTCCCATCCATTAATCGAGTAATCCAATTCGAATCCAATTTCATTTCTGAACAAATAGTCATCCAAATCTCGAATTTCCATGAGTTTTCCAACGGGGAAAGGTCGCATCCAAAACATGAATGCAGTCTCACAACTGTCACATTTGAAGGCTGTTATGTCctaaaaaacttgtttttttgttgatagtT--TGTggttgagcattttttgaaaaaatcgtttaaa--------tTAAACTACAAAATACAT-----ACTTTTGTTAAAACATAAACATTAAATGCTCGTTCCTGGATATACTCGGCAGCCTG
i caeJap4.Scaffold18213 I 35 C 0

a score=1485.000000
s ce10.chrX              2417888 3 + 17718866 TAA
s cb4.chrX              17169360 2 - 21540570 -aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    28680 3 -  1794024 AAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3159571 2 -  4147112 -AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   150584 3 +   720316 AAA
i caeJap4.Scaffold18213 C 0 I 37
e caeSp111.Scaffold582    428550 37 -   484378 I

a score=1818.000000
s ce10.chrX              2417891 4 + 17718866 TATT
s cb4.chrX              17169362 4 - 21540570 tatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    28683 4 -  1794024 CATT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3159573 4 -  4147112 TATT
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18213   150587 37 +   720316 I
e caeSp111.Scaffold582    428550 37 -   484378 I

a score=-843.000000
s ce10.chrX              2417895 5 + 17718866 CCAAA
s cb4.chrX              17169366 5 - 21540570 caaaa
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig15    28687 1 -  1794024 T----
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3159577 28 -  4147112 I
e caeJap4.Scaffold18213   150587 37 +   720316 I
e caeSp111.Scaffold582    428550 37 -   484378 I

a score=571.000000
s ce10.chrX              2417900 35 + 17718866 GTAGTCGAACTAATAAATGCAAAATATTAGAACTC
s caeRem4.Crem_Contig15    28688 31 -  1794024 ---GTTGAGTT-ATAGTTTCAGCAAATCTGAACTC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3159577 28 -  4147112 I
e caeJap4.Scaffold18213   150587 37 +   720316 I
e cb4.chrX              17169371 28 - 21540570 I
e caeSp111.Scaffold582    428550 37 -   484378 I

a score=0.000000
s ce10.chrX              2417935 627 + 17718866  
e caePb3.Scfld02_0       3159577  28 -  4147112 I
e caeJap4.Scaffold18213   150587  37 +   720316 I
e cb4.chrX              17169371  28 - 21540570 I
e caeSp111.Scaffold582    428550  37 -   484378 I
e caeRem4.Crem_Contig15    28719   0 -  1794024 C

a score=1382.000000
s ce10.chrX              2418562 4 + 17718866 AACA
s caeSp111.Scaffold582    428587 4 -   484378 aact
i caeSp111.Scaffold582  I 37 C 0
s caePb3.Scfld02_0       3159605 4 -  4147112 AACT
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18213   150624 4 +   720316 AACA
i caeJap4.Scaffold18213 I 37 C 0
e cb4.chrX              17169371 28 - 21540570 I
e caeRem4.Crem_Contig15    28719 0 -  1794024 C

a score=-1773.000000
s ce10.chrX              2418566 1 + 17718866 -T
s cb4.chrX              17169399 1 - 21540570 -T
i cb4.chrX              I 28 C 0
s caeSp111.Scaffold582    428591 1 -   484378 -c
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3159609 1 -  4147112 -C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   150628 1 +   720316 A-
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    28719 0 -  1794024 C

a score=144956.000000
s ce10.chrX              2418567 186 + 17718866 ACTTCTAATGTAAAACGCTCCACATTTTCAGTTTTTGCCACCAGAATCAACGAGTTTATAGAGGCCATTCTGAGCTGTGTTATTTGAGCTCTCATGCGCAAAACAGTTGTTTCCATTGGAACAAACCGAATACCCGGTAAAACGGAAAACGCATCTCTCCAAGCAGTAAAATCGGGTGCTGAA--A--TT
s cb4.chrX              17169400 186 - 21540570 ACCTCCAATGTGAATCTCTCCACATTTTCAGTCTTTGCAACTAAAATCAAAGAATTGACAGCTTGCATTCTGAGTCGTGTGATTTGAGCTCTCATTTTGAGCACTGTAGTTTCCATTTGCATGAATCGAACACCGGGTAAAACAGAAAATGCTCCTTGCCATGCAGTGAAATCAGCAGCTGAA--AAT--
i cb4.chrX              C 0 I 582
s caeRem4.Crem_Contig15    28719 186 -  1794024 ACTTCCAATGTGAAtctttccacattttcagtctttgCCACTAGAATTAATGAGTTGATAGATTGAAATCTAAGTTGTGTTATTTGAGCTCTCATTTTCAATACTGTAGTTTCCATTGGCACAAATCTGACACCTGGTAGAACTGAGAAAGCTCCTCTCCAAGCGGTGAAGTCGGGTGCTGAA--AAA--
i caeRem4.Crem_Contig15 C 0 I 16
s caeSp111.Scaffold582    428592 184 -   484378 acctCCAACGTAAACCTCTctacattttctgtttttgccACTAGAATTAATGTATTGATAGATTGTATTCTCAATTGCGTGATTTGTGCTCTCATTCTCAATACTGTTGTTTCCAAGGCTACAAATCTTACTCCAGGTATCACGGAAAAGGCTCCTCTCCAAGCAGTGAAATCGgcagctgaa--a----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3159610 186 -  4147112 GCCTCCAACGTGAATCTTtctacattttcagtttttgcaacTAGGATCAAGGAATTGATGGATTGCATTCTCATTTGTGTTATTTGAGCTCTCATTTTTAGAACAGTTGTTTCCATTGCAACGAATCGTACACCGGGAAGTACTGAAAATGCTCCACGCCAAACAGTGAAATCCGGTGCTgaaaca----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   150629 186 +   720316 ACTTCCAAAGTGAATCTCTCAACATTTTCCGTTTTAGCCACTAGAATCAAAGAATGGATAGATTCAAGTCGAAGTTGAGAAATTTGAGCTCTCATTTTCAAGACGGTTATCTCCATAGAAATGAATCGAACACCTGGTAGTGCCGAAAATGCTCCTTGCCAAGCTGTGAAGTCTGGTgctgaa--agt--
i caeJap4.Scaffold18213 C 0 I 57

a score=1336.000000
s ce10.chrX              2418753 2 + 17718866 AT
s caeRem4.Crem_Contig15    28921 1 -  1794024 -t
i caeRem4.Crem_Contig15 I 16 I 1
s caeSp111.Scaffold582    428776 2 -   484378 at
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3159796 2 -  4147112 at
i caePb3.Scfld02_0      C 0 I 365
s caeJap4.Scaffold18213   150872 2 +   720316 AT
i caeJap4.Scaffold18213 I 57 C 0
e cb4.chrX              17169586 582 - 21540570 I

a score=-1263.000000
s ce10.chrX              2418755 10 + 17718866 ------------------------------------------------------ATGTAACAGG
s caeJap4.Scaffold18213   150874 64 +   720316 ATTTGGTTCCCATGATTTTTGGGTACAATTGCTTTTTGGTagcggctactctttgggtaacaaa
i caeJap4.Scaffold18213 C 0 I 116
e caePb3.Scfld02_0       3159798 365 -  4147112 I
e cb4.chrX              17169586 582 - 21540570 I
e caeSp111.Scaffold582    428778  0 -   484378 C
e caeRem4.Crem_Contig15    28922  1 -  1794024 I

a score=-815.000000
s ce10.chrX              2418765 16 + 17718866 CTAAAAATAATGTCTC-
s caeRem4.Crem_Contig15    28923 15 -  1794024 -caataattagttatt-
i caeRem4.Crem_Contig15 I 1 I 131
s caeSp111.Scaffold582    428778 16 -   484378 tgaagaatcaTTATTC-
i caeSp111.Scaffold582  C 0 I 17
s caeJap4.Scaffold18213   151054 17 +   720316 cTAAAAATAGATTCAGA
i caeJap4.Scaffold18213 I 116 C 0
e caePb3.Scfld02_0       3159798 365 -  4147112 I
e cb4.chrX              17169586 582 - 21540570 I

a score=269717.000000
s ce10.chrX              2418781 344 + 17718866 ACTTACGATACATATTATCGTACAACACCGTGCTGTTTGGTGTGATGTTCAAGTCGGCAAAAATATCTGTAATCACATTTTGAAATACCAGTGTTGACAAAACCATAGTAGTATAGGAGGGAGAAGATATTGTTGGTACACTCGTT---CCTGCAAATTTCAT--------AGGTATTTTCTTACAAATAGTGAC----------TTCTGACCATTGAAGTTGAGTGGCAAAGACCAGTAATTGAGATCCACTTGAATTGTTGGCACTTGCGAAATTCTAGCAAGTTCAGCGACCAGGCTTATCGAATCGTTTGACCGACATACAGATATCACAAAACTTACATTTACCATTTGGTCACAAACTG
s cb4.chrX              17170168 352 - 21540570 ACTTACGAAATATATTATCATAGAGCACTGTGCTGTTTGGCGTAATACTTAAATCCGCGAAAATATCGGTtatcacattttgaaaaaccaacgTAGACAAAACCATAGTCGTGTAGGATGGTGATGAAATTGTTTGAAGAGTTGTAGTTTCTGC-AA----AA--------AAGTactttctttcaattttttaaaactagacCCTTCTGACCATTGAAATTAAGAGGCAGTGCCCAGTAATTGAGATCCACTTGAATCGTTGGCACTTGTGATATTCGTGCCAGTTCAGCGACTAAACCCATCGACCGCGACGAGCGGCACACGCTTATGACAAAACTGACATTCTGCATTTTTGAGcaaactg
i cb4.chrX              I 582 C 0
s caeRem4.Crem_Contig15    29069 343 -  1794024 actTACGATAAATATTGTCATACAACACAGTACTATTGGGAGTTATATTCAAATCAGCAAAAATATCCGTTATCACGTTTTGAAATACAAGAGTTGATAAAACCATTGTTGAATAGGATGGAGAAGTGATAGTTGGGGCACTTGTG---TCTGT-AATTTCAA--------AGGTATTTTcttacaaattttttg----------tccTGACCATTGAAATAAAGAGGCAGCGACCAGTAATTGAGATCCACTTGAATTGTTGGCACTTGCGAAATTCTGGCGAGTTCAGAGACTAAACCGATGGAGGAAGGAGTCCGGCATACGCTTATAACAAAACTGACATTCACCATTTGGgaacaaactg
i caeRem4.Crem_Contig15 I 131 C 0
s caeSp111.Scaffold582    428811 349 -   484378 ttttacGATATATGTTATCGTATAAGACAGTGCTGTTTGGAGTAATATTCAAATCTGCGAAGATATCCGTTatcacattttgaaacacAAGTGTTGATAAAACCATTGTTGTATATGAAGGAGACGCTATCGTTAGAGCACTTGTG---TCtgc-aatttcaaa-ttatcgAGGTATTTTCTTACAAA-TTCTTG----------TGCTGAccattgaaattcaaaggCAAAGACCAGTAATTGAGATCCACTTGAATTGTTGGTACTTGTGATATTCTAGCGAGTTCAGCGACTATACCAATTGAATGACTCGACCTGCACACGCTTATGACAAAACTGACATTCACCATTTTCACGCAGActg
i caeSp111.Scaffold582  I 17 C 0
s caePb3.Scfld02_0       3160163 351 -  4147112 ACTTACGGTAAATGTTATCATACAGAACTGTGCTATTTGGTGTGATGTTCAAGTCCGCAAAGATATCCGtaatcacattttgaaaaacaagtgtTGATAAAACCATTGTTGCATACGAAGGAGATGCTACTACTGGAGCACTTGTG---TCTACAAATTACGAA-ACACCGAggtattttctttcaaatttcaaa----------tactgACCGTTGAAATTAAGAGGCAAAGACCAGTAATTGAGATCCACTTGAATTGTTGGTACTTGTGATATTCTAGCCAGTTCAGCGACTATACCGATTGAATGACTCGACCTGCACACGCTTATAACGAAACTAACATTCACCATCTTGTCGCAAacta
i caePb3.Scfld02_0      I 365 C 0
s caeJap4.Scaffold18213   151071 349 +   720316 ACTTACAAAACATATTATCATACAACACTGTGCAATTTGGAGTAATACTAAGATCAGCAAAAATATCACCAATCACATTTTGAAACACCAGTGTGGACAGGATCATTGTTGTGTAGGAAGGAGATGTTATCGTTCGAACACTTGTA---TCTGC-AAACACATATTTGCAGTGAAATGTTCTTGCAGA--AGAGA----------GGCTGACCATTGAAATTGATAGGCAAAGGCCAGTAATTAAGGCCCACTTGAATTGTTGGCACTTGTGAGATCCGAGCGAGTTCAGCGACCAATCCAATTGTGTGGCTCGACCGGCATAGGCTTATTACAAAACTCacatttatcattttttcgcaaactg
i caeJap4.Scaffold18213 C 0 I 47

a score=-1040.000000
s ce10.chrX              2419125 7 + 17718866 AAATGTT--
s caeRem4.Crem_Contig15    29412 7 -  1794024 --aaatttt
i caeRem4.Crem_Contig15 C 0 I 30
s caeSp111.Scaffold582    429160 6 -   484378 -aacatt--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3160514 6 -  4147112 -gaagtt--
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   151420 47 +   720316 I
e cb4.chrX              17170520 0 - 21540570 C

a score=350.000000
s ce10.chrX              2419132 21 + 17718866 TAAGGTTAAGTGAAAAGTATA
s caeSp111.Scaffold582    429166 21 -   484378 gaaaaaaaaatgggaagaacA
i caeSp111.Scaffold582  C 0 I 9
e caePb3.Scfld02_0       3160520  1 -  4147112 I
e caeJap4.Scaffold18213   151420 47 +   720316 I
e cb4.chrX              17170520  0 - 21540570 C
e caeRem4.Crem_Contig15    29419 30 -  1794024 I

a score=0.000000
s ce10.chrX              2419153 591 + 17718866  
e caePb3.Scfld02_0       3160520   1 -  4147112 I
e caeJap4.Scaffold18213   151420  47 +   720316 I
e cb4.chrX              17170520   0 - 21540570 C
e caeSp111.Scaffold582    429187   9 -   484378 I
e caeRem4.Crem_Contig15    29419  30 -  1794024 I

a score=420.000000
s ce10.chrX              2419744 12 + 17718866 tttaaattcaTA
s caePb3.Scfld02_0       3160521 12 -  4147112 tttgatattatA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213   151420 47 +   720316 I
e cb4.chrX              17170520  0 - 21540570 C
e caeSp111.Scaffold582    429187  9 -   484378 I
e caeRem4.Crem_Contig15    29419 30 -  1794024 I

a score=-1909.000000
s ce10.chrX              2419756 27 + 17718866 AAATAAAAT-----------GCTGAAGTGAA-----TATTCTG
s cb4.chrX              17170520 43 - 21540570 aaagaaaaaggatGATGGTGACAGATTTGAAATATTGGTTCTG
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       3160533 20 -  4147112 --AGAGAAC---------TGAAAGAAATCAA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   151420 47 +   720316 I
e caeSp111.Scaffold582    429187  9 -   484378 I
e caeRem4.Crem_Contig15    29419 30 -  1794024 I

a score=244016.000000
s ce10.chrX              2419783 677 + 17718866  
s cb4.chrX              17170568 633 - 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15    29449 703 -  1794024  
i caeRem4.Crem_Contig15 I 30 C 0
s caeSp111.Scaffold582    429196 698 -   484378  
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3160553 654 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   151467 653 +   720316  
i caeJap4.Scaffold18213 I 47 I 399

a score=2307.000000
s ce10.chrX              2420460 10 + 17718866 TATAGATTTT
s cb4.chrX              17171201 10 - 21540570 GTATGGTTTT
i cb4.chrX              C 0 I 421
s caeRem4.Crem_Contig15    30152 10 -  1794024 TGATCGATTT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    429894 10 -   484378 GAGTGAATTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3161207 10 -  4147112 CAATGAATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   152519 10 +   720316 TATTTATTTT
i caeJap4.Scaffold18213 I 399 C 0

a score=110395.000000
s ce10.chrX              2420470 155 + 17718866 CGAGGAGTCAAATCCTGACTTTGG--------CGAGGAGTTTTGTTGGAATTTCTGGAATGGCATTCGATGCCAGCGTCGGATACCGGAGTGAATGAAAGTTGTCCTTTCTTTTTGAGCTCTTCTTCCGCTTCGCTTGTTGGCGATTTTCTGCCCGATTTCTG
s cb4.chrX              17171632 163 - 21540570 caaaaattcaaatctttgaaGTGATTGATTGGCGTGGGGTACGGTTGGAGCCGATCGAATGATTTTCGATGCCAGCATCAGAAACAGGTGTGTACGATAGTTGTCCCTTCTTCTTGAGTTCATCTTCCGCCTCGCTTGTCGGCGATTTTCTgccagatttctg
i cb4.chrX              I 421 C 0
s caeRem4.Crem_Contig15    30163 155 -  1794024 CTCGGAGTCATATCTTGGCTGTGA--------CGCGGCGTTCGATTAGAGTTTCTAGAGTGAATTTCGATTCCTGCATCAGAAACTGGTGTGAATGAGAGTTGtcctttcttcttcaactcatCTTCAGCTTCACTAGTTGGCGACTTCCGACCAGGTTTCtg
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    429904 149 -   484378 CTTGGAGTAATATCTTGGCTGT--------------GAGTTCGATTTGAGTTTCTCGAGTGTCTTTCAATTCCAGTATCAGAAACTGGAGTAAACGATAGTTgtcctttctttttgagttcaTCTTCCGCTTCACTTGTTGGTGATTTACGTCCGGCTTTCTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3161217 155 -  4147112 CTGGGAGTTATATCTTGGCTGTGA--------CGAGGAGTTCTGTTAGAGTTTCTTGAGTGAGTTTCTATTCCCGTGTCAGAAACTGGAGTGTAGGAGAGTTGTCCTTTCTTTTTGAGTTCGTCTTCTGCCTCACTCGTTGGAGACTTACGTCccggtttctg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   152529 155 +   720316 CCGGCTACTGAATCATTATTTCGC--------CTTGGAGTGCGGTTAGAAGCTCTCGAATAATTTTCAATTCCAGTGTCTGAAACGGGAGTGAATGAAAGTTGTGCCCTCTTTTTCAGCTCCTCTTCTGCTTCACTTGTTGGTGATTGACGACCCggtttctg
i caeJap4.Scaffold18213 C 0 C 0

a score=1220.000000
s ce10.chrX              2420625 3 + 17718866 TAA
s caeRem4.Crem_Contig15    30318 3 -  1794024 gaa
i caeRem4.Crem_Contig15 C 0 I 34
s caeSp111.Scaffold582    430053 3 -   484378 TAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3161372 3 -  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   152684 3 +   720316 aaa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17171795 0 - 21540570 C

a score=395.000000
s ce10.chrX              2420628 3 + 17718866 ATT
s caeSp111.Scaffold582    430056 3 -   484378 GTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3161375 3 -  4147112 att
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold18213   152687 3 +   720316 ata
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17171795 0 - 21540570 C
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=273.000000
s ce10.chrX              2420631 1 + 17718866 A
s caeSp111.Scaffold582    430059 1 -   484378 A
i caeSp111.Scaffold582  C 0 I 22
s caeJap4.Scaffold18213   152690 1 +   720316 a
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3161378 19 -  4147112 I
e cb4.chrX              17171795 0 - 21540570 C
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=-23.000000
s ce10.chrX              2420632 32 + 17718866 ACAGAATTCATTCTGGATGGAGTATATGTATG
s caeJap4.Scaffold18213   152691 14 +   720316 a------------------aaatatatgtata
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3161378 19 -  4147112 I
e cb4.chrX              17171795  0 - 21540570 C
e caeSp111.Scaffold582    430060 22 -   484378 I
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=0.000000
s ce10.chrX              2420664 589 + 17718866  
e caePb3.Scfld02_0       3161378  19 -  4147112 I
e caeJap4.Scaffold18213   152705   0 +   720316 C
e cb4.chrX              17171795   0 - 21540570 C
e caeSp111.Scaffold582    430060  22 -   484378 I
e caeRem4.Crem_Contig15    30321  34 -  1794024 I

a score=140.000000
s ce10.chrX              2421253 32 + 17718866 ctagttttagagttatactcattcgaataatt
s cb4.chrX              17171795 32 - 21540570 aaattttcaaacttcaatttcTGCTAAAACTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3161378 19 -  4147112 I
e caeJap4.Scaffold18213   152705  0 +   720316 C
e caeSp111.Scaffold582    430060 22 -   484378 I
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=1119.000000
s ce10.chrX              2421285 4 + 17718866 ttca
s cb4.chrX              17171827 4 - 21540570 TTCA
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold18213   152705 4 +   720316 ttca
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3161378 19 -  4147112 I
e caeSp111.Scaffold582    430060 22 -   484378 I
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=-333.000000
s ce10.chrX              2421289 15 + 17718866 -aaattatcaaaaaaA
s cb4.chrX              17171832  3 - 21540570 -AAA------------
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3161397 15 -  4147112 -aaataatcGGGAAAA
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18213   152709 15 +   720316 aaaacagccaaaaaa-
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    430060 22 -   484378 I
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=-778.000000
s ce10.chrX              2421304 5 + 17718866 -TTTAA
s cb4.chrX              17171835 4 - 21540570 -TTTA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    430082 5 -   484378 -TTCGA
i caeSp111.Scaffold582  I 22 C 0
s caeJap4.Scaffold18213   152724 5 +   720316 attaa-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3161412 0 -  4147112 C
e caeRem4.Crem_Contig15    30321 34 -  1794024 I

a score=386116.000000
s ce10.chrX              2421309 623 + 17718866  
s cb4.chrX              17171839 621 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    30355 636 -  1794024  
i caeRem4.Crem_Contig15 I 34 I 37
s caeSp111.Scaffold582    430087 611 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3161412 614 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   152729 619 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-19247.000000
s ce10.chrX              2421932 50 + 17718866 CACAAACTTT---TCTAAAAATATAAGTTC-AAGCTCAAGAGATCAAGCTTCAA
s cb4.chrX              17172460  1 - 21540570 -------------------------------A----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    430698 33 -   484378 -AACAGTTTT----------ATATGATAGCTAATGTTT-----CTGGTC-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3162026 34 -  4147112 -agtaa--------------aaataatttccattcTTTGGCAGTTGAGT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   153348 37 +   720316 ------TATTGTGTGTTTAGATACATATTAAAACTTTTTGCAT-----------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    30991 37 -  1794024 I

a score=415753.000000
s ce10.chrX              2421982 535 + 17718866  
s cb4.chrX              17172461 531 - 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15    31028 538 -  1794024  
i caeRem4.Crem_Contig15 I 37 I 5
s caeSp111.Scaffold582    430731 547 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3162060 531 -  4147112  
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18213   153385 527 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-7106.000000
s ce10.chrX              2422517 32 + 17718866 -TAGGTACACTATTCTTCTGTTAAAATCTAAGT--
s cb4.chrX              17172996 14 - 21540570 -----------------CTGGAA--ATTTACAG--
i cb4.chrX              I 4 I 17
s caeRem4.Crem_Contig15    31571 11 -  1794024 -----------------CTGGAA-----TACAT--
i caeRem4.Crem_Contig15 I 5 I 18
s caeSp111.Scaffold582    431278 15 -   484378 -------------TGATCTGCTA-----TTCAT--
i caeSp111.Scaffold582  C 0 I 2
s caeJap4.Scaffold18213   153912 30 +   720316 GTatattaattttgtttttgtta-----tcCATGT
i caeJap4.Scaffold18213 C 0 I 2
e caePb3.Scfld02_0       3162591 30 -  4147112 I

a score=117557.000000
s ce10.chrX              2422549 126 + 17718866 TACACTGGAATACCGACAAAACAAATACTCTCCCACTCCTCCATATAAAACATTTGACCTTTGAGTGATAAAAATTTTTCACGTTCGCCATCACCCATTCTGTGGCGTTCTTCGGTCACTGAAAAT
s cb4.chrX              17173027 126 - 21540570 AACACAGGAATGCCAACATAGCAAATGCTCTCCCATTCTTCCATATAGAACATTTGGCCTTTGAGGGACAGGAATTTTTCGCGCTCCTGGTCTCCCATTCTATGACGTTCCTCagtcactgaaaat
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig15    31600 126 -  1794024 AACACCGGAATTCCAACATAGCAAATACTCTCCCATTCTTCCATATAGAACATTTGACCTTTCAAGGATAGAAACTTCTCACGTTCCACGTCGCCCATTCTGTGCCGTTCTTCtgtcactgaaaaa
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    431295 125 -   484378 TACACAGGAATTCCAACGTAGCAAATGCTCTCCCATTCTTCCATATAAAACATTTGTCCTTTCAAagacaaaaacttttcacGTTCAACGTCTCCCATTCTATGACGTTCTTCTgtcactgaaaa-
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3162621 126 -  4147112 TACACAGGAATTCCGACGAAACAAATACTTTCCCATTCTTCCATGTAGAACATTTGACCCTTCAATGATAAGAACTTTTCACGTTCAGCATCAACCATTCTATGACGTTCCTCAGTCACTATAAAT
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18213   153944 126 +   720316 TACACTGGAATACCGACAAAGCAGATACTTTCCCACTCCTCCATATAAACCATTTGACCTTTTAGCGTTAAAAACTTCTCCCTTTCAGAATCAGCCAATTTATGTCGTTCTTCGGTCACTGAAAGT
i caeJap4.Scaffold18213 I 2 I 8420

a score=-894.000000
s ce10.chrX              2422675 10 + 17718866 GTTTGACAGT
s cb4.chrX              17173153 10 - 21540570 tttagaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    31726 10 -  1794024 tatcaaacag
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3162747 10 -  4147112 TTTTGTATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   154070 8420 +   720316 I
e caeSp111.Scaffold582    431420  0 -   484378 C

a score=-10875.000000
s ce10.chrX              2422685 24 + 17718866 AAGAAAATGTGTCACAAATATT---------TT---
s cb4.chrX              17173163 24 - 21540570 tgttAGAATTGGATTGTGAGca---------tt---
i cb4.chrX              C 0 I 646
s caeRem4.Crem_Contig15    31736 23 -  1794024 t-caaaaactacctcgtcatct---------tt---
i caeRem4.Crem_Contig15 C 0 I 24
s caeSp111.Scaffold582    431420 33 -   484378 agaaaaaaaaagaatttcagttattttgaaGCT---
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3162757 24 -  4147112 TGGAGAACCAGGAAGTAGAATT---------CT---
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   162490 24 +   720316 ---aaaaaaaaaaattaaagat---------gtCAT
i caeJap4.Scaffold18213 I 8420 C 0

a score=89513.000000
s ce10.chrX              2422709 109 + 17718866 ACTTTGATCTACATCCGTAGTTTTGTAGACTAGAATTCCATCTTCGTCTTCTTGTATAGGATCAGAAGATATCAATTCGAAAATGTTGTTTGAGTGGAGCATAATCTGT
s cb4.chrX              17173833 109 - 21540570 ACTTTGATCGGTATCTGTTGTCTTGTACACTAAAATTCCATCCTCATCTTCTTGAATCGGTTCACATGAGATTaactcaaaaatattgtttgaATGTAGCATGATCTGA
i cb4.chrX              I 646 C 0
s caeRem4.Crem_Contig15    31783 109 -  1794024 ACTTTGATCAATGTCGGTGTGTTTGTAGACTAATAGcccatcttcatcttcttgaaTTGGCTCACAAGATATGAGTTcgaaaatattgtttgaatGCAGCATTATCTGT
i caeRem4.Crem_Contig15 I 24 I 265
s caeSp111.Scaffold582    431454 109 -   484378 ACTTTGTTCAACATCGGTACTTTTGTATACAAGAAGTCcatcttcgtcttcttgtATTGGTTCACATGATATCAATTCGAATATATTGTTTGAATGGAGCATTATCTAT
i caeSp111.Scaffold582  I 1 I 213
s caePb3.Scfld02_0       3162782 109 -  4147112 ACTTTGATCCACATCTGTATGTTTGTAGACAAGGAGACTATCTTCGTCTTCTTGTATTGCTTCACATGATATTAGCTCGAAGATGTTGTTTGAGTGAAGCATAATCTAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   162514 109 +   720316 ACTTTGGTCGATATCTGAATGCTTGTACACGAGGACCTCTTCCTCTTCGTTTTGAATGGCTTCGGTTGATATCAACTCAAAAATGTTGTTCGAGTAGAGCATTATCTGT
i caeJap4.Scaffold18213 C 0 C 0

a score=1069.000000
s ce10.chrX              2422818 6 + 17718866 GATTTA
s cb4.chrX              17173942 6 - 21540570 AATTCA
i cb4.chrX              C 0 I 201
s caePb3.Scfld02_0       3162891 5 -  4147112 -GTTTA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   162623 6 +   720316 GTTTTG
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    431563 213 -   484378 I
e caeRem4.Crem_Contig15    31892 265 -  1794024 I

a score=1109.000000
s ce10.chrX              2422824 7 + 17718866 ACTGATT
s caePb3.Scfld02_0       3162902 7 -  4147112 ACTGTAT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   162629 7 +   720316 ACTGATT
i caeJap4.Scaffold18213 C 0 I 556
e cb4.chrX              17173948 201 - 21540570 I
e caeSp111.Scaffold582    431563 213 -   484378 I
e caeRem4.Crem_Contig15    31892 265 -  1794024 I

a score=1240.000000
s ce10.chrX              2422831 220 + 17718866 TGAGAACTCTTTTTTTAGGTGAAGCAAAAAAGTTTCGAAAG---CAATCACATGCAATATCAAAGGAGTAGTTACGGTTCTGTATGTTCAAAcatgtgttttcagagtgccctatttgggtttgatctaccttgatctacgacaattgcgggagattaggcgaaaaacttctcaactgattttgcatggctaagagcg--tgctgacgtcaca-tttattcgggta
s caePb3.Scfld02_0       3162909 182 -  4147112 TGGAAGTACT-------GGACATGACAAAACATTACAACAGTGACATTCTCATGCAAAAT-------GTTGttgcaa----aagttttcaaac-tttttctccaaact------tttgaatttgatcTA---TGATCTCC--CAATCG-------------GAAACACTTCACAAA-GGTTATTCATATCAAAGAGAGACTGACGGCGTCACACCCTATTCTGGTA
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold18213   162636 556 +   720316 I
e cb4.chrX              17173948 201 - 21540570 I
e caeSp111.Scaffold582    431563 213 -   484378 I
e caeRem4.Crem_Contig15    31892 265 -  1794024 I

a score=0.000000
s ce10.chrX              2423051 501 + 17718866 aaaatttccgcattttgtggatcaaaccgtaatggaacaggttggcaccacatgctcaaatgaacaactttcgtaatgaaacttctcaaaacaaatttaaaacaattatatggcggttcacaaattcgaaaaaaatgacttaattttaacagaaatgatcaattttggccacttatccgtgtgcagcggtcggaagttggATATTGATAAAATTGACTAAATGTACACACTCAAAGTTCCcgtgggactaggatgtcccattacgggttgatctacagaaaatgcgaaaattttgtaaatctacgtagatgaaaccgaaatgagacactctgaaaccatctgACAGACTACAATACGAAAATTGGAAAAAAAAACTTCGCGAAACAAACAAACAACGACTAAACAAAAATTATTTCTGGCCCTATTCAAGAATGTGAATTTACATTCAAATTTACAAATATGACACAACAACTAAACCGTGGAACATTTTTGTTAAGTTTT
e caePb3.Scfld02_0       3163091  42 -  4147112 I
e caeJap4.Scaffold18213   162636 556 +   720316 I
e cb4.chrX              17173948 201 - 21540570 I
e caeSp111.Scaffold582    431563 213 -   484378 I
e caeRem4.Crem_Contig15    31892 265 -  1794024 I

a score=-160.000000
s ce10.chrX              2423552 13 + 17718866 CACAGTC---CCTCT------G
s cb4.chrX              17174149 22 - 21540570 CACAATCACACCTCTCCAAGAT
i cb4.chrX              I 201 C 0
e caePb3.Scfld02_0       3163091 42 -  4147112 I
e caeJap4.Scaffold18213   162636 556 +   720316 I
e caeSp111.Scaffold582    431563 213 -   484378 I
e caeRem4.Crem_Contig15    31892 265 -  1794024 I

a score=391874.000000
s ce10.chrX              2423565 725 + 17718866  
s cb4.chrX              17174171 728 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    32157 718 -  1794024  
i caeRem4.Crem_Contig15 I 265 C 0
s caeSp111.Scaffold582    431776 692 -   484378  
i caeSp111.Scaffold582  I 213 I 164
s caePb3.Scfld02_0       3163133 721 -  4147112  
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18213   163192 740 +   720316  
i caeJap4.Scaffold18213 I 556 I 964

a score=-933.000000
s ce10.chrX              2424290 5 + 17718866 ATAAA
s cb4.chrX              17174899 5 - 21540570 GAAGA
i cb4.chrX              C 0 I 145
s caeRem4.Crem_Contig15    32875 5 -  1794024 gaaaa
i caeRem4.Crem_Contig15 C 0 I 138
s caePb3.Scfld02_0       3163854 1 -  4147112 G----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I

a score=0.000000
s ce10.chrX              2424295 6 + 17718866 CGAATT
e caePb3.Scfld02_0       3163855 0 -  4147112 C
e caeJap4.Scaffold18213   163932 964 +   720316 I
e cb4.chrX              17174904 145 - 21540570 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=780.000000
s ce10.chrX              2424301 39 + 17718866 AAATAATATACAATAGTATATTCTACTCAAAATCATAAC
s caePb3.Scfld02_0       3163855 32 -  4147112 ----AACATATATTTGTGTAATTTA---AAAATCCAAAC
i caePb3.Scfld02_0      C 0 I 236
e caeJap4.Scaffold18213   163932 964 +   720316 I
e cb4.chrX              17174904 145 - 21540570 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=0.000000
s ce10.chrX              2424340 102 + 17718866 GGTTGCAGTTCCCATTTTTGAAAGTGAAAATAGTGAAGAGAAGGCAGGTTCTTGGGAAAAATCAATTTTTTTTGCGGCACAGATTTTTGGTTTATAATTTGA
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e cb4.chrX              17174904 145 - 21540570 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=332.000000
s ce10.chrX              2424442 93 + 17718866 ATTCTCTGTGCTAACTTCACGAAGGCTGA---CAGTTTTATTGAAAAGTTGTTAAACAAGttaaaggaacggttcaaacaattccgaatttatatg
s cb4.chrX              17175049 80 - 21540570 ATCCAAATTGTCAACTTCAAGATCATTTATCTCAGTCtctgtgaaaaat-----aacaa--------aattttgctaaCAGTT---AAATTACATA
i cb4.chrX              I 145 I 120
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=0.000000
s ce10.chrX              2424535 158 + 17718866 tatgtataccaaaaatgtgctcaaaagtacaaattttgaaatgagacttctcaaaaaagttttcaaattttttatgggccttttagctaaaatatcaagttttcccacatttccgtctcacaaattttggaagaaaactttttttttgaaattaccat
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e cb4.chrX              17175129 120 - 21540570 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=295.000000
s ce10.chrX              2424693 130 + 17718866 attttattgcatcttttttcgttgatcaattttataaatttgaagccgatgggcaacacttttcgccaattttcggttatatatatatatttgcgttagatggatttcaattaactaaataatctgaaat
s cb4.chrX              17175249 104 - 21540570 GCcttattatctcggttttc-cCAACAGATGTCGTAAa---gaggtcaactgataaaactgtCATCGAAttatcattaacattt--------------------tatcagtttaccaatt--tttgatat
i cb4.chrX              I 120 I 29
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=0.000000
s ce10.chrX              2424823 41 + 17718866 aagcaatcaaagtacgtaataaaagatgcagtagcactacg
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e cb4.chrX              17175353 29 - 21540570 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=-1593.000000
s ce10.chrX              2424864 410 + 17718866 gaaaagttgaaaaaactggagattttagctaaaagtaagccattattttcgaatttgtataccgtcatTTGTTCATTATGGGTGGTTTT-----TTCTTTTGTAACAGGAACTCAAATTGATTGCAAAATACTAT-ATTCCATTTTGAGAATTAGCGAGTTTATGGCAGTTCAAAAAATTCAAAGAAAAATTATTAAAGTGAGCTGAAATCTAACATCCTCATTCTGTTCGCTTTTTTCTCGTTTTTTTTCTAATTTTGGTACATTTTTAGCCGATTCGAAATCAAATAAGGTTACCTATCTTTTTGAGATTGGATATTTGTTTTCCAAAATTATCGATTTTCTAGCCAACTATTTCTGATTTGTCCCTTTCCAAAGACTTTAG----ATTAAATTCTTGTACA--ATTTAACATCATCACA
s cb4.chrX              17175382 339 - 21540570 aaagtgttttGATAGCTGGGGAGTTTGAATAATA--AATGCAAATGTTTCACATTTGTGT----TTCTCTGTAAGCTTCCGCTAATCTTATAAGTTTTACTGTTGCAGA----CACATCTATATC-ATACACTAGAATTCCagctcgaaaa------------------ttccaaaaattcataatccCA-CATTCCTGTTACCCTATTTCAAATACCTAGATTC--CTACCTATGCCCAaaccttttttctca------gatATTTCCATCCGA----------------------TAACTTTTTG-----GGGTACCTAGTTCCCA-------------TACATCAAATTCTCTCACATCCTTCGCCTTCC-----CTTTATTCTCATTGAAATTTAATAGATCTTTCAACGACGTAATT
i cb4.chrX              I 29 C 0
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I
e caeRem4.Crem_Contig15    32880 138 -  1794024 I

a score=5673.000000
s ce10.chrX              2425274 50 + 17718866 ----------TCCGCGTTGTAATGGTATTCATGACATA-----------TCCCTCTTCA-----------AATCGAAAGTAA
s cb4.chrX              17175721 82 - 21540570 TGGTGGGAAGCCGACGTTGTAATGGTATTCATGACATATTTCCATCCCCTTCGCTCTCTCTTCTACTAGGAATCAAAAGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    33018 48 -  1794024 ----------TCCACGTTGTAATGGTATTCATGACA-------------TTCCCACTCT-----------AATAGAAAGTGA
i caeRem4.Crem_Contig15 I 138 C 0
e caePb3.Scfld02_0       3163887 236 -  4147112 I
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I

a score=7347.000000
s ce10.chrX              2425324 154 + 17718866 TGGGTTCG--TATTATATGTCATCGGG--------CGTTTTTGCCGCCACGACGAACTCTCTGAGAAGTATCTGGGCAAGTATTCAATTCTAG--GTCATATGTGAGTATGGTGGGTGTCTCATTG--ACCTGACACATAAG------TTCCCTCTATTTTA----CAACAAGACAGA----
s cb4.chrX              17175803 163 - 21540570 TGGGTTCG--TATTATATGTCATTGGAGGGCCCCCCGTTTTTGC--------CAGACTCTCTTAGAAATTTCATCACTCCGATTTGAGGTCAGACGCCACATGTGGATTC--------TGTCATTGTCTCCTGAAACATACA-TATGTCCGCCACTACTCTAGTGGCACACACATACACAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    33066 139 -  1794024 TGGGTTCG--TATTATATGTCATCGG---------CGTTTTTGC--------CGAACTC---TGGGAAGTG------TTCAATTCGAGGTCAG--GTCATATGTGAATAC-------GTCTCATTG--ACCTGACACATAAGTTGAATCCCTCTTCACTCTC----CCCCCTCAGACACAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3164123 130 -  4147112 TGGATTCGTATATTCCGAGTCATTGG---------CGTTTTTTG--------CCGTCCCATCTGGA--------------GATTCGAGGTCAG--GTCATATTTGAGTGT-------CTGTCATGTTGACCTGAGACATAA--CTTGTCCCCTTTTCTTATAGT--TCtcctaa--------
i caePb3.Scfld02_0      I 236 C 0
e caeJap4.Scaffold18213   163932 964 +   720316 I
e caeSp111.Scaffold582    432468 164 -   484378 I

a score=2271.000000
s ce10.chrX              2425478 39 + 17718866 -----------CAAAAAAGAAGTTT-------------CACGCGCTGCTGCGACGACAAACCA
s cb4.chrX              17175966 48 - 21540570 CTAAAGTTCCTAGGAACTAAGGTTTACCCGCAGACACACACGCG---------------ACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    33205 34 -  1794024 T----Gttccaagagaaaaaagttt-------------cacgCG------------TCCGCCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432632 27 -   484378 -----------caagaaaaaagttt-------------tacgCG------------CGAACCG
i caeSp111.Scaffold582  I 164 C 0
s caePb3.Scfld02_0       3164253 27 -  4147112 -----------acaaaaaaaagttt-------------cacgcG------------CGAAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   163932 964 +   720316 I

a score=148534.000000
s ce10.chrX              2425517 207 + 17718866 GGAACATTTCGGTCTGCGAGAA--TCATCAAACATTTGTCGACGACGGAAGG-AAACAATCGTCAAGAGTGC----------ACTGTCTTT------------------CACGCACTACTCA-CAATCTTCAAGTTGCAACATTTTGACACAAA----GGAAACT--GAGCGGT----CGCGA-AAGGAATTATTTGTGAACAAATAACA--CC-----GCTACAAGCATCAAACTACATGTCGATCTTTGAACTTT
s cb4.chrX              17176014 232 - 21540570 GGAACATTTCGGTCTGTCAGAACCCCATCAAACATTTGC--------------GAACAATCGTCAAGAGTGCGGGCGAGAAAACAGTCTTTTCTCATTCTCACACCACATACACTctgtttgaaaatcttcaagtTGCAACATTTTGACACAAAGGGCGGAAACCGAGAGCGGGGTAGCGCGAGAAA-----TTTGGTGAACAAATAAGACCCC------CTACAAGCACCAAACTACAAGTCGATCTTTGAACTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    33239 210 -  1794024 GGAACATTTCGGTCTGACAGAA-CCCATCAAACATTTGTCGACTACGGGAAG-GAACAATCGTCAAGAGTGCGG----GACGACAGTCTTT------------------CACACACTATTCG-AAATCTTCAAGTTGCAACATTTTGACACAAA----GGAAACC--GAGCGGG--AGCGCGA-AAA-----TTTAGTGAACAAACAAGA--TT------CTACAAGCATCAAACTACATGTCGATCTTTGAAATAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432659 206 -   484378 GGAACATTTCGGTCTGTCAGAA--CTATCAAACATTTGTTGACGACAGAAAGAGAACAATCGTCAAGAGTGCGG----CCCGACTGTCTTT------------------CACACACTATTCG-AAATCTTCAAATTGCAACATTCTGACACAAA----GGAAACC--GAGCgag--------g-aaaa---tttttgtgaacAAACAAGA--CC------CTACAAGCATCAAACTACATGTCGATCTTTGAACTAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3164280 203 -  4147112 GGAACATTTCGGTCTGTCAGAA--CCATCAAACATTTGTTGACGACAGAAAG-GAACAATCGTCAAGAGTGCGG----GGCGACAGTCTTT------------------CACACACTATTCG-AAATCTTCAAGTTGCAACATTTTGACACAAA----GGAAACC--GAGCGAG--------A-GAA-----TTTTGTGAACAAACAAGA--CC------CTACAAGCATCAAACTACAAGTCGATCTTTGAACTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   164896 197 +   720316 GAAATTCTTCGGTC----ACAA--CTTATAAACATTTGCTAAGAACTGC----GAACAATCGACGAGAGCGCGGTGAGTGCGGCTGTCTTT------------------CACACTTCATTCG--GTTCTTCAAGTTGCAACAGTTTGACACAAT----GGAAACC--GACCTGT--------A-GAA-------------GCAAATAGTG--CAATCCAACGACCAGCATCAAACTACATGACGATCCTTGAACTAT
i caeJap4.Scaffold18213 I 964 C 0

a score=546.000000
s ce10.chrX              2425724 1 + 17718866 T
s cb4.chrX              17176246 1 - 21540570 T
i cb4.chrX              C 0 I 55
s caePb3.Scfld02_0       3164483 1 -  4147112 T
i caePb3.Scfld02_0      C 0 I 47
s caeJap4.Scaffold18213   165093 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    432865 0 -   484378 C
e caeRem4.Crem_Contig15    33449 0 -  1794024 C

a score=494.000000
s ce10.chrX              2425725 19 + 17718866 ------TTCGAA----TCTTGTATATGCA
s caeJap4.Scaffold18213   165094 29 +   720316 ACTGCGGTCAAAAACTtcttgtacataca
i caeJap4.Scaffold18213 C 0 I 68
e caePb3.Scfld02_0       3164484 47 -  4147112 I
e cb4.chrX              17176247 55 - 21540570 I
e caeSp111.Scaffold582    432865  0 -   484378 C
e caeRem4.Crem_Contig15    33449  0 -  1794024 C

a score=0.000000
s ce10.chrX              2425744 636 + 17718866  
e caePb3.Scfld02_0       3164484  47 -  4147112 I
e caeJap4.Scaffold18213   165123  68 +   720316 I
e cb4.chrX              17176247  55 - 21540570 I
e caeSp111.Scaffold582    432865   0 -   484378 C
e caeRem4.Crem_Contig15    33449   0 -  1794024 C

a score=-293.000000
s ce10.chrX              2426380 48 + 17718866 TATGATCCACA-----TTCACAATTCAACATCCCCACCACTTTCCACGTCCAC-------------
s caeRem4.Crem_Contig15    33449 50 -  1794024 TATGATCCATATACTGTTTCCAATTCACtatttcccttttctt-----tctactg-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432865 51 -   484378 TAAGATCcaca-------ttcatttc---atttcggTCCCTTT-----TCTGCGGTAGACgctcag
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3164484 47 -  4147112 I
e caeJap4.Scaffold18213   165123 68 +   720316 I
e cb4.chrX              17176247 55 - 21540570 I

a score=34053.000000
s ce10.chrX              2426428 135 + 17718866 AAACTAAAATATGAATAAACG----CACTAAATGTTTTGTTACTTTTGGTTTGGTTTGCATACCAGTCGG-CGTACAAAAC-AACCAGTT--ATTGATGATGAGTTGT-CATC-GGCCCCCCCCCCCCCTCTCCT---CTCTTATAGC
s cb4.chrX              17176302 104 - 21540570 aaaagaaaatatggaTAAACACTACCCCTAAATGTTTTGTTGCTTCCCCGTT-------------------TGTGCCTTTA-AACCAGTT------ATTATGAGTTGt-catc-tttc-------ttcttttccc---ctc--A----
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig15    33499 129 -  1794024 aaaagaaaatctgaatagGCA------CTAAATGTTTTGTTACTTTTCGGATAGTTTGCATACCAGTCCG-TGTACAATAC-AACCAGTTATATAAATGATGAGTTGTCCGtc-ttcc-----cttctttttcct---gTC--AAAGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432916 136 -   484378 -aaagaaaatatgaataaacA------CTGAATGTTTTGTTACTTTTCATATGGTTTGCATACTACTCCGGGGTACAATACAAACCAGTT--ATTCATGGTGAGTTGTCCGTC-TTTCAtcctcccttttctcttcacgTC--AAAGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3164531 126 -  4147112 aaaagaaaatctgtATAAAC--------------TGTAGTTGCATTCCTCTCGGTTTGCATACCGGTCTTCTGTACAATTC-AACCAGTT--ATCGATGATGAGTTGTCCgtcttttcattctctcttttttcct---gtc--aAAGC
i caePb3.Scfld02_0      I 47 C 0
e caeJap4.Scaffold18213   165123  68 +   720316 I

a score=182369.000000
s ce10.chrX              2426563 163 + 17718866 ACTAACCTATAGTGAAGTGTCAAACCGGTACGGCTTTCGTGTTCGCAGTAGAATGACGGAGGTTTGAGTTTGGGAAACGTAAAACGGAGGTACTCGTGCAAATTGTCCAATCCGTTCAAAAACTGCGGAAATGTTCGTCCCAAAACGCGTAGTACCTTG--AAAA-
s cb4.chrX              17176406 165 - 21540570 ACTAACCTATAGTGAAGTGTCAAACCGGTACGGCTTTCGTGTTCGCAGTAGAATGATGGGGGTTTGAGTTTGGGAAACGTAAACCGCAGGTATTCATGCAAATTGTCCAATCCGTTTAGGAATTGCGGAAATGTGCGGCCGAGGACTCGCAAGACCTGTTGGAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    33628 162 -  1794024 ACTAACCTATAGTGAAGTGTCAAACCGGTACGGCTTTCGTGTTCGCAGTAGAATGATGGTGGTTTGAGTTTTGGAAACGTAAAACGGAGGTATTCATGCAAATTATCCAACCCATTCAAAAACTGTGGAAATGTACGACCAAGTATTCGCAAAACCTGT---AAA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433052 162 -   484378 ACTAACCTATAGTGAAGTGTCAAACCGGTACGGCTTTCATGTTCGCAGTAGAATGACGGCGGTTTGAGTTTGGGAAATGTAAAACGGAGGTATTCATGCAAATTGTCCAATCCGTTTAGAAATTGTGGGAATGTCCGGCCGAGAACACGCAAAACCTTG---AAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3164657 162 -  4147112 ACTAACCTATAGTGAAGTGTCAAACCGGTACGGCTTTCATGTTCACAGTAGAATGATGGCGGTTTGAGTTTGGGAAATGTAAAACGGAGGTATTCATGCAAATTGTCCAATCCGTTTAGAAATTGTGGGAATGTTCGACCAAGAACTCGTaaaacctag---aaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   165191 163 +   720316 ACTAACCTATAGTGAAGAGTCAAACCGGTACGGCTTTCATGTTCACAGTAGAATGAAGGCGGTTTGAGTTTGGGAAACGTAAATCGGAGGTATTCATGCAAATTGTCCAATCCGTTCAGGAATTGTGGGAAAGTCCGTCCCAGGACTCGCAGAACCTTG---AAAA
i caeJap4.Scaffold18213 I 68 I 33

a score=-6741.000000
s ce10.chrX              2426726  8 + 17718866 ATTGG-----------ACT-----
s cb4.chrX              17176571  8 - 21540570 AACGA-----------ATT-----
i cb4.chrX              C 0 I 852
s caeRem4.Crem_Contig15    33790  8 -  1794024 TTTGG-----------AGT-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433214 17 -   484378 GTGAATAAT-------AATGAGAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3164819 24 -  4147112 aacaacaattataATAAATTAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   165354 33 +   720316 I

a score=-37787.000000
s ce10.chrX              2426734  69 + 17718866 GATAAAAAAAA--------ACCTGTATTTTTTAA------------------------------AAACGAAACGGTAACAATTTTTTTTAATTTTCACTCACATAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
s caeRem4.Crem_Contig15    33798  39 -  1794024 GATGAGAAAACTTGACCG----------------------------------------------AAACGT---------------------------------CAAGTCTATTGGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433231  70 -   484378 -ATGAAA------------TTCTGATCTTTGTGA------------------------------AAATGG-----------------------------------------TTATTTTGTA-----------GATGAAA-----------------------------------------------Cttcacaat---------------------------------------------------ttttcataG------------------------------------------------------------------------------CATCTTCA----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3164843 352 -  4147112 GATGAAAAAACGAGTCCGGTTTAGGTTTTTATAATatcatcaaaacaaattctgaagaatcaCTAAATAGAGCGGC-acag----ttgaaattttcaataactcaAGTCTATGGTTTTGTAAAAGTTTGATTGATGCAATCAGTTGGGATAACTATCAAGTATGGGTCCCTATGATACTACTCTAGTTTCACAATTTCGATAAATGCCGAACtggaaactttctttcaatTCCAGACTAAGCAAGATTTTCACAAATCGTTCAACGAAATTATGCTGATGAGTGATTAATTTAAcgcatttttttcggattgagaactccttttttctcgaatcattttcagtgtttcctGCCCAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   165354  33 +   720316 I
e cb4.chrX              17176579 852 - 21540570 I

a score=-258.000000
s ce10.chrX              2426803 16 + 17718866 GTATGTAAAACAATAC
s cb4.chrX              17177431 16 - 21540570 GTATTTAACAAAATTT
i cb4.chrX              I 852 C 0
s caePb3.Scfld02_0       3165195 12 -  4147112 ----TCTAGTCATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   165354 33 +   720316 I
e caeSp111.Scaffold582    433301  0 -   484378 C
e caeRem4.Crem_Contig15    33837  0 -  1794024 C

a score=140540.000000
s ce10.chrX              2426819 212 + 17718866 ATAGTA---TACCTTATTAAACTCAAACTTTGTGAGAAACTTGTAAAAACTTGTTCCAATATTTGTCATCAGTTCATCCACAGGATCCCCCGTCACATCATGACATGCCCAAATCAACTTGTGAGATAAACCTTCAGAAAACTTTTTGTCCATTTGAAATGTATCGTCGGTGACCCCCGACACGAACTGAAAA---GTTGTGAA---------------------------CTC----AAAATAACCTT
s cb4.chrX              17177447 241 - 21540570 GTCGTA-TCTACCTTATTGAACTCATATTTAGTGAGAAATTTATAGAAGCTTGTCCCAATATTACTCATCAACTCATCAACTTGATCTCCAGTGACATCGTGGCAAGCCCATATCAACTTGTGTGATAATCCCTCCGAATACTTCTTATCCATTTGAAAAGCATCATCAGTGACTCCagaaacaaactgaaaaaagatcaggag--actttttttcagaaagtt-----ctctTCCCCCTAATAACCTT
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig15    33837 226 -  1794024 ---------TACCTTATTGAACTCgtattttcccaaaaacttgtaaaaactTGTTCCGATATTAGCCATCAGTTCATCGACCGGATCTCCAGTAACATCGTGACACGCCCAAATCAATTTATGCGGAAGTCCCTCCGAAAACTTCTTGTCCATTTGAAATGTATCTTCAGTAACCCCCgaaacaaactgaaaa---cttaAGAA--ATGTTTATCCCTAGTCTT-----GCCTT----TTGAAAACCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433301 231 -   484378 -------ATTACCTTGTTGAATTCATATTTGGTCAAAAACTTGTAGAAACTAGTCCCGATATTATTCATCAACTCATCGACCGGATCCCCGGTTACATCGTGGCATCCCCAAATCAATTTATGCGACAATCCTtccgaaaactttttatcCATTTGAAATGTGTCTTCAGTGACCCCCGAAACAAACTGAAAGat-gtaaaaaaatatttcctgTCCAGTACTT-----GCATT-----CGAAAACCCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3165207 237 -  4147112 GTTACAGATTACCTTATTGAATTCAAACTTTGTTAGAAAGGTGTAGAAACTTGTTCCGATGTTCGTCATCAACTCATCCACAGCCACCCCAGTCACATCATGGCAGGCCCAAATCAATTTATGTGATAATCcttccgaaaactttttatcCATTTGAAATGTATCTTCAGTGACCCCGGAgacaaactgaaaaca-acaaagGA--AATCCCTTTTCCTCCTTT-----GCATT----CCTAAAACCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   165387 227 +   720316 ---ATAGATTACCTTGTTGAATTCGTACTTGGTGAGAAATTTGTAGAAACTGGCGCCAATTTCTGCCATTAACTCATCAATCGCTATTCCTTTCACTTCATGACACCCCCAGATGAGTTTATGGTGTAGGCcttcagaaaacttttgatCCATTTGAAAAGTGTCTTCTGTGACACCGGAGACATACTAAAAGA--AGAATGTA--GTTTTTATTTCAAGGTTTCATACATATT---------------
i caeJap4.Scaffold18213 I 33 C 0

a score=459.000000
s ce10.chrX              2427031 19 + 17718866 GACAATGAA---------GAAAACAACA
s caeRem4.Crem_Contig15    34063 28 -  1794024 GACGACCTTACTCGCGTCAAAAACAACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433532 28 -   484378 GACAACGAAAACCACGACGATGACAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3165444 28 -  4147112 GACGACAAGAAAAACGGCGACAACAGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   165614 19 +   720316 ---------CATAACGCGTAAATCCATA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17177688 31 - 21540570 I

a score=179973.000000
s ce10.chrX              2427050 578 + 17718866  
s cb4.chrX              17177719 665 - 21540570  
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig15    34091 591 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 844
s caeSp111.Scaffold582    433560 600 -   484378  
i caeSp111.Scaffold582  C 0 I 869
s caePb3.Scfld02_0       3165472 585 -  4147112  
i caePb3.Scfld02_0      C 0 I 813
s caeJap4.Scaffold18213   165633 633 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-829.000000
s ce10.chrX              2427628 1 + 17718866 -A
s cb4.chrX              17178384 1 - 21540570 -A
i cb4.chrX              C 0 I 1145
s caeJap4.Scaffold18213   166266 1 +   720316 C-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3166057 813 -  4147112 I
e caeSp111.Scaffold582    434160 869 -   484378 I
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=150.000000
s ce10.chrX              2427629 4 + 17718866 TATT
s caeJap4.Scaffold18213   166267 4 +   720316 TTTT
i caeJap4.Scaffold18213 C 0 I 1021
e caePb3.Scfld02_0       3166057 813 -  4147112 I
e cb4.chrX              17178385 1145 - 21540570 I
e caeSp111.Scaffold582    434160 869 -   484378 I
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=0.000000
s ce10.chrX              2427633 1962 + 17718866  
e caePb3.Scfld02_0       3166057  813 -  4147112 I
e caeJap4.Scaffold18213   166271 1021 +   720316 I
e cb4.chrX              17178385 1145 - 21540570 I
e caeSp111.Scaffold582    434160  869 -   484378 I
e caeRem4.Crem_Contig15    34682  844 -  1794024 I

a score=91.000000
s ce10.chrX              2429595 1 + 17718866 A
s caePb3.Scfld02_0       3166870 1 -  4147112 A
i caePb3.Scfld02_0      I 813 C 0
e caeJap4.Scaffold18213   166271 1021 +   720316 I
e cb4.chrX              17178385 1145 - 21540570 I
e caeSp111.Scaffold582    434160 869 -   484378 I
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=384.000000
s ce10.chrX              2429596 16 + 17718866 ATGGCCCTCGATGCTA
s caePb3.Scfld02_0       3166871 16 -  4147112 ATATCTTTTTATATAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   167292 16 +   720316 ATGACCCTCTTCACTT
i caeJap4.Scaffold18213 I 1021 C 0
e cb4.chrX              17178385 1145 - 21540570 I
e caeSp111.Scaffold582    434160 869 -   484378 I
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=600.000000
s ce10.chrX              2429612 1 + 17718866 G
s cb4.chrX              17179530 1 - 21540570 G
i cb4.chrX              I 1145 C 0
s caePb3.Scfld02_0       3166887 1 -  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   167308 1 +   720316 G
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    434160 869 -   484378 I
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=-303.000000
s ce10.chrX              2429613 1 + 17718866 T
s cb4.chrX              17179531 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    435029 1 -   484378 t
i caeSp111.Scaffold582  I 869 C 0
s caePb3.Scfld02_0       3166888 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   167309 1 +   720316 C
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    34682 844 -  1794024 I

a score=54608.000000
s ce10.chrX              2429614 89 + 17718866 TAATTAATATACATATAT------AACCTGTCTCC-AGGGCCACTCGAACAACAGTGTGCACACATTCCAGGTGAGCCACTTCCTGCCCTTAATCC
s cb4.chrX              17179532 83 - 21540570 TAATTAGTATACAGTCAT------GACCTTTT----GAGACCACTCCACGAGTTGAGCACACACTG---GTTTGAGCCACTTCCTGTCCCTAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    35526 81 -  1794024 TAATTAATATACAGTTAT------GACCTTT---------CCACTCGAATATGAGAGAGCACACAGTCCAGTTGAGACACTTCCTGTCCCTAATCC
i caeRem4.Crem_Contig15 I 844 C 0
s caeSp111.Scaffold582    435030 89 -   484378 taattAATATACAGTCAT------GACCTCTTCTC-TTGCCCTCTCCAATGTCGGTAAGTACACATTCCGGTTGAGCCACTTCCTGCCCGTAATCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3166889 90 -  4147112 TAATTAATAAACAGTCAT------GACCTTTTCTCATTTGCCACTCGAATCTCGGTAAGTACACATTCTGGTTGAGCCACTTCCTGCCCTTAATCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   167310 84 +   720316 TAATTAATACACAGTTATCAAGGAGACCT------------CACTCGAAGGTCAGTAAGTACACATTCCGGTTCAACCACTTCCCGTTCATAATCC
i caeJap4.Scaffold18213 C 0 I 509

a score=-43853.000000
s ce10.chrX              2429703 416 + 17718866  
s cb4.chrX              17179615 336 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    35607 435 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435119 443 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3166979 435 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   167394 509 +   720316 I

a score=24290.000000
s ce10.chrX              2430119  97 + 17718866 CTTCCTCATCAGTGTAATCAGA-------TTCACA-----------------------CCACTTCA----GAAAATCCACTTGCCTGGTGTTTTCCAGTAATTGCTCGCGTGGGCAATACGGGCATTTGAA
s cb4.chrX              17179951 112 - 21540570 cTTGCTCTT---Cggcttc----------ttcatcttcattttctgCTGGAA------TGGTCCACGCGTGGAAATCCACTGATTTTGCATTGTCCAGATTTTGCTCTTTTGGACAGTAGGGGCACTTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    36042  96 -  1794024 -------------GAGATC----------TTCATGTCTATAACTT--TGATA------CCATCTAC----GGAACTCCACAAGTTTGGTGTTTTCCAATAATTGCTCTCGTGGACAGTATGGGCATTTGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435562  97 -   484378 cttcttctt----gaGAGCAA--------TCCACGTCACG------------------CCATCTTT----GGAACACCACCAATCTTGCATTCTCTATGTATTGATCTCTCGGGCAGTAAGGGCACTTGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3167414 127 -  4147112 cttcttcctctccaacttcaatttcctcctcctcgtcACTAATGTATTCATAttcatcccattttt----tgaacttcactGCTCTTGCACCTTCTATGTATTGTTCTCTTGGGCAGTAGGGACACTTGAA
i caePb3.Scfld02_0      C 0 I 176
s caeJap4.Scaffold18213   167903  97 +   720316 cTCCTTCGTTAAAATCATC----------ATCATTTTG--------------------CCATTTAG----AGAAATCCACCTTTTTGGCCGTGTCCATAATTTGTTCTCTCGGACAGTACGGGCACTTGAA
i caeJap4.Scaffold18213 I 509 C 0

a score=2715.000000
s ce10.chrX              2430216 15 + 17718866 TTTTGAGAGTCTGAA
s cb4.chrX              17180063 15 - 21540570 TCGTAGATGTCTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    36138 15 -  1794024 GCGTTGTTGTCTTGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435659 15 -   484378 ACGCAGGTGTCTAGA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   168000 15 +   720316 TCTCGAATGCCTGAA
i caeJap4.Scaffold18213 C 0 I 262
e caePb3.Scfld02_0       3167541 176 -  4147112 I

a score=1039.000000
s ce10.chrX              2430231 13 + 17718866 ACATTTGTACGAA-----
s caeRem4.Crem_Contig15    36153 13 -  1794024 ATGCCTGTATAaa-----
i caeRem4.Crem_Contig15 C 0 I 180
s caeSp111.Scaffold582    435674 18 -   484378 ATGTCTGTACAAAGGTCA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3167541 176 -  4147112 I
e caeJap4.Scaffold18213   168015 262 +   720316 I
e cb4.chrX              17180078  0 - 21540570 C

a score=-2631.000000
s ce10.chrX              2430244 30 + 17718866 TTATTAGCTCTTATCTAGTTAAT-----------TGTTTTG--
s cb4.chrX              17180078 17 - 21540570 -------------TCTGCATGAT-----------GATTTTA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    435692 31 -   484378 ------------TTATGAGTCATTTCgctattcaaattttttg
i caeSp111.Scaffold582  C 0 I 116
e caePb3.Scfld02_0       3167541 176 -  4147112 I
e caeJap4.Scaffold18213   168015 262 +   720316 I
e caeRem4.Crem_Contig15    36166 180 -  1794024 I

a score=178.000000
s ce10.chrX              2430274 242 + 17718866 AAGATCTTATGCTCCTGG-AattttgaacgtatagacccaaaatgtgctcaaatgaacaaaAACctaattttagcttgaatctcaaattttggtcactttactgtgtcgcagcggtcc-tgagttgatttttttaggttataatttttcattgaatactttggtcgtttggcttacatttttcgttggttcgttgaaagccg---atagttgataagtttttgccatttttgttcaccgttcggctt
s cb4.chrX              17180095 219 - 21540570 TATACGATATACCACTGTCaagttcgagctcaattatctcaattcttatccaa------gatatctaaaatcagtcaacttttaaaatgttcataaggttatgatg----aacaattcattagttgattttttt---ttaatatctttgacagta-gcctagataaattggctcaaa--------------gttgacaactatttagaattgccaatttttttcagttcatttttttggttcagttt
i cb4.chrX              C 0 I 119
e caePb3.Scfld02_0       3167541 176 -  4147112 I
e caeJap4.Scaffold18213   168015 262 +   720316 I
e caeSp111.Scaffold582    435723 116 -   484378 I
e caeRem4.Crem_Contig15    36166 180 -  1794024 I

a score=0.000000
s ce10.chrX              2430516 176 + 17718866 taaatgtaccttaaccaacgaaataatgtgaaataaattaccaaaatgtctaataaaatatgataattcaaataaaccatcttcggattgcagcgacactgaaaagtggccaaaattataaaagttggctaaaattagaccattatttctttcgaaattttgaaccgctataaaat
e caePb3.Scfld02_0       3167541 176 -  4147112 I
e caeJap4.Scaffold18213   168015 262 +   720316 I
e cb4.chrX              17180314 119 - 21540570 I
e caeSp111.Scaffold582    435723 116 -   484378 I
e caeRem4.Crem_Contig15    36166 180 -  1794024 I

a score=-897.000000
s ce10.chrX              2430692 174 + 17718866 ttttttgaaaaatgtttgagaagttccattacaaaattcgttcatttgagcacattttgagcatatacctttaaaatacccataaccgttactcgtattttaaGACGTCCCTTGCCTAAAAGCTAATCCAATTCG-------------------ACTACTTTAAAATTATCTAGGATCTTGAACCAACTAATC
s cb4.chrX              17180433 137 - 21540570 TGTTTTAGAGAGTGTCAGAGACGTTCT-CTGCAAG--------------------TGtgtgcgtctctcact-------------------ctctttctctcagctctctcATCCCCAAATACTATTTCCGCGCTCTGTGAGTGTTTTCTGTGTGCTGCTTCAAAAT----------------CTGATTGATC
i cb4.chrX              I 119 C 0
e caePb3.Scfld02_0       3167541 176 -  4147112 I
e caeJap4.Scaffold18213   168015 262 +   720316 I
e caeSp111.Scaffold582    435723 116 -   484378 I
e caeRem4.Crem_Contig15    36166 180 -  1794024 I

a score=1910.000000
s ce10.chrX              2430866 2 + 17718866 GA
s cb4.chrX              17180570 2 - 21540570 GA
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig15    36346 2 -  1794024 GA
i caeRem4.Crem_Contig15 I 180 C 0
s caeSp111.Scaffold582    435839 2 -   484378 GA
i caeSp111.Scaffold582  I 116 C 0
s caePb3.Scfld02_0       3167717 2 -  4147112 GA
i caePb3.Scfld02_0      I 176 C 0
e caeJap4.Scaffold18213   168015 262 +   720316 I

a score=17653.000000
s ce10.chrX              2430868 45 + 17718866 GGTTTGCTTAGTGTGAGCGCCGTTCTCTACTT----TGTGTGTATTTTC
s caeRem4.Crem_Contig15    36348 45 -  1794024 GGTGTGTTGAGTGTGAGCGCCGTTCTATGCTA----TGTGTGTGCGTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435841 49 -   484378 GGTGTGTTGAGTGTGAGCGCCGTTCTTTgctgtatgtgtgtgtgtgtct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3167719 47 -  4147112 Ggtgtgttgagtgtgagcgccgttctctgctgta--tgtgtgtgtgtct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   168015 262 +   720316 I
e cb4.chrX              17180572 41 - 21540570 I

a score=910.000000
s ce10.chrX              2430913 1 + 17718866 T
s caeRem4.Crem_Contig15    36393 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 I 71
s caeSp111.Scaffold582    435890 1 -   484378 t
i caeSp111.Scaffold582  C 0 I 94
s caePb3.Scfld02_0       3167766 1 -  4147112 t
i caePb3.Scfld02_0      C 0 I 85
s caeJap4.Scaffold18213   168277 1 +   720316 T
i caeJap4.Scaffold18213 I 262 C 0
e cb4.chrX              17180572 41 - 21540570 I

a score=37727.000000
s ce10.chrX              2430914 77 + 17718866 GTGGGGCAAA------GGGGAGGG------GCACAGGACGCCAGCTCCGCCCACCGCTG----------AGGTCTCGCTAGGGTCGACGTAAAGCAGTC--
s cb4.chrX              17180613 77 - 21540570 gaagggcAGA------GGGGTGGGGGCACCGCCCCGGG----AGCTCCGCCCACATCGG-AAAACGCAGAGGCC---------TCGACGTAAAGCAG----
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig15    36465 81 -  1794024 GAAGGGCAGA------GGGGAGGG------GCCCCGGACGCCAGCTCCGCCCACCTCAGCAAAAC---GAGGCCTCGCT-GGGTCGACGTAAAGCAG----
i caeRem4.Crem_Contig15 I 71 C 0
s caeSp111.Scaffold582    435985 77 -   484378 GAAGGGCAAAGG----GGGGAGGG------GCACCGGACGCcagccccgcccacttcgG-GGAGA---AACGCGGCC------GCGACGTAAAGCAG----
i caeSp111.Scaffold582  I 94 C 0
s caePb3.Scfld02_0       3167852 74 -  4147112 GAAGGGCAAA------GGGGAGGG------GCA-CGGACGCCAGCTCCGCCCACCTCGG-GAAAC---GAGGCCTCG------TCGACGTAAAGCAG----
i caePb3.Scfld02_0      I 85 C 0
s caeJap4.Scaffold18213   168278 86 +   720316 Gaggggcgaagggggaggggaggg------gCA-CGGACGCCGGCTCCGCCCA-TTCGG-GAAACAAGGAGACCTCGGC----CCGATAGAAAGCAG--TC
i caeJap4.Scaffold18213 C 0 I 33

a score=7831.000000
s ce10.chrX              2430991 34 + 17718866 TCAGTCAGTGTCG------TG----T-CGGCCAACTGCAACCA---CC
s cb4.chrX              17180690 41 - 21540570 TCATTCAGTGTCGACGCGCTC----T-CCGCCGGT-GTCCTCTCC-Cc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    36546 47 -  1794024 TCATTCAGTGTCGACGCTCTCCTGGT-CTCCCGGCAGCACTCTCCTCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436062 40 -   484378 ----TCAGTATCGACGCGCTC-CGTTCCCCCCGGCAGCCACCA---CT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3167926 43 -  4147112 TCATTCAGTGTCGACGCTCTC-CGGT-CTCCCAGCAGCCATCT---CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   168364 33 +   720316 I

a score=109475.000000
s ce10.chrX              2431025 394 + 17718866  
s cb4.chrX              17180731 389 - 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15    36593 547 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    436102 419 -   484378  
i caeSp111.Scaffold582  C 0 I 68
s caePb3.Scfld02_0       3167969 408 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   168397 401 +   720316  
i caeJap4.Scaffold18213 I 33 C 0

a score=-10741.000000
s ce10.chrX              2431419 65 + 17718866 -TCATCGATTGC--TGCAGGAGCAAAACCGAC----GGGAAATAGATCACCGAGTTGGATCATTGCATGCAT
s cb4.chrX              17181125 60 - 21540570 -CCAGACATCCCATTGCAGGCCGGAATCT-----------TGGAAGTCTGTTAGTTGATTGATACCTTTGAA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15    37144 61 -  1794024 -ACAGACA------CGGAGATTCGTATCCCAT----ACAATACAACTCGGTGAACTCCGTCATTCCTCGGAA
i caeRem4.Crem_Contig15 I 4 C 0
s caePb3.Scfld02_0       3168377 65 -  4147112 -CCATAAA------TGTAGGTGCCAATGTAACCAAGAAAGCAGAGTTCTGTCACTTTGTCAACGTTTCGAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   168798 65 +   720316 TCCACATAGTA---CGAACTGTTGTATCCGCT----AAGACCCCATTCCGAGAGTTGCGAAAGAGCTTGGGT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    436521 68 -   484378 I

a score=6505.000000
s ce10.chrX              2431484 30 + 17718866 GCCAAATCGCATTCTGAACA---------TCAGAAAATT
s cb4.chrX              17181185 39 - 21540570 TCCGTGTTTCAATCTGAAcaataatattttcagcaggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    37205 39 -  1794024 GCCGTATTTCAGTCTGaacaaaattgttttgagaatGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436589 39 -   484378 GCCATACTTCAAcctaaacagaaaaatgatttgagaaaa
i caeSp111.Scaffold582  I 68 C 0
s caePb3.Scfld02_0       3168442 37 -  4147112 ACCGTATTTCATCCTGAACaaaaaac--gtcaggaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   168863 30 +   720316 CCCAAATCTCATactaaaaaatacaaattt---------
i caeJap4.Scaffold18213 C 0 I 56

a score=-5792.000000
s ce10.chrX              2431514 48 + 17718866 ACGTTAAAATTTTGAGTGCCTGCAAAAGAAACCCACAAATTTTTTAAC
s cb4.chrX              17181224 30 - 21540570 atac----attttcag--------------actaacATCAAGTTCAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    37244 34 -  1794024 AGGCT-CAATGTTTAG-------------AACTAACGTTGTTTTGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436628 34 -   484378 atga--tgacttTAAG------------TCACGCACAAGTTTTTGAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3168479 32 -  4147112 ataa--aaa----aagt----------ttcactaACAAGTTTTTGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   168893 56 +   720316 I

a score=76718.000000
s ce10.chrX              2431562 203 + 17718866 GGGGCTTCGTAGGGTATGAAGAAAGACGCCATTTTCAACGTTAGAATTTCACGATTTGTGAAGTCGAAAAGATACTTGTATCTTATATCAATCATCGATGGTTTTCCGACAAGAAGTGCTCCGACCAA---GTGCTTGAACTTTTGCCTGTCGTCGACGAATGGTGACTTGAATCTTctcagatctttcacggctttgtcatagtt
s cb4.chrX              17181254 203 - 21540570 GGAGCCTCTTTAGGAACGAAAAACGCTGACAATctggaaaccaatttttccttGTTCTTCTGATCAAACAGATTCCGATATCGTGCGTCTTCCTTCGCTGCCTGACCCATCACAAGTGCTCCTACCAATCTCTGCGATTGTCGTTGTTCCTCGCCTTCCTTCGG---TACGAACGCTTTCAGTTGTTTTACAGTTCGACCATAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    37278 203 -  1794024 GGTGCTTCGTacggaatgaaaaatgatgcCATCTTTTTTGCAAGTTTCTCTCGGCTCGTATAATCAAATAAATGTTTGTATCGATCGTCCTCCATTGCACCTTTTCCAACGAGGAGCGCTCCAACCAG---CCGAGTTGCTCTTTGTTTATCATCTCCAAACGGAGATTTGAACCGCTTCAATTGTCGAACAGTCCGGTCATAGCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436662 203 -   484378 GGTGCTTCGTATggcacaaaaaatgatgtcatttttttggatattgTTGACCGACTTGTGTTGTCAAAAAGGTTCCTGTATCGAACATCGTTTTTCGATGCTTTACCAAGTAGAAGTGCCCCAACCAA---ACGTTTTGCTCTTTCCTTATCCTCTGTGAATGGCGATTTGTATTTTCTGAGATGACGAACTGTCCGATCATAGCT
i caeSp111.Scaffold582  C 0 I 74
s caePb3.Scfld02_0       3168511 203 -  4147112 GGTGCCTCATATGGGACGAAGAATGATGTCATTTTCTGGGATATAAATTCTCGGTTCGTGGagtcaaaaaggtttttgtaACGAGCATCTTCCTTCGCAGCCTTTCCAATTAGTAGGGCTCCAACTAA---CAGTGCTGCTCTTTCTTTATCATCCACGAATGGGTACTTGAATTTCCGAAGTTGTTTAACAGTGCGATCATAGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   168949 203 +   720316 GGAGAGTCGCTTGGTAAGAAAAACGAAGTCATCTTGTGTTGAATATCCTCTCGATTTCCATTGTCAAAAAGATCTCTGTATCGATTATCGCACATGGATGTTTTTCCGATAAGAAGTGCTCCAAGAAG---TCTGGGTCCTTTCAGGCGCTCATCTTCCCATGgtcttttaaataatttcaacTGGTCAACGGCTCTTTCGTAGTT
i caeJap4.Scaffold18213 I 56 C 0

a score=-374.000000
s ce10.chrX              2431765 9 + 17718866 attcgagcc
s cb4.chrX              17181457 8 - 21540570 -TTCGAGTC
i cb4.chrX              C 0 I 999
s caeRem4.Crem_Contig15    37481 8 -  1794024 -GTCaagac
i caeRem4.Crem_Contig15 C 0 I 4
s caePb3.Scfld02_0       3168714 8 -  4147112 -TTCCAAAC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   169152 5 +   720316 -GTCTG---
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    436865 74 -   484378 I

a score=214.000000
s ce10.chrX              2431774 11 + 17718866 taaaagcagaa
s caeRem4.Crem_Contig15    37493  8 -  1794024 aaaa---aaaa
i caeRem4.Crem_Contig15 I 4 I 89
s caePb3.Scfld02_0       3168726 11 -  4147112 aaaaaccaaaa
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   169157  7 +   720316 ----AATGGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865 74 -   484378 I

a score=302.000000
s ce10.chrX              2431785 2 + 17718866 at
s caePb3.Scfld02_0       3168737 2 -  4147112 at
i caePb3.Scfld02_0      C 0 I 61
s caeJap4.Scaffold18213   169164 2 +   720316 GT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865 74 -   484378 I
e caeRem4.Crem_Contig15    37501 89 -  1794024 I

a score=561.000000
s ce10.chrX              2431787 11 + 17718866 ttttgaaggag
s caeJap4.Scaffold18213   169166 11 +   720316 TTTTGtaaaag
i caeJap4.Scaffold18213 C 0 I 619
e caePb3.Scfld02_0       3168739 61 -  4147112 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865 74 -   484378 I
e caeRem4.Crem_Contig15    37501 89 -  1794024 I

a score=0.000000
s ce10.chrX              2431798 688 + 17718866  
e caePb3.Scfld02_0       3168739  61 -  4147112 I
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865  74 -   484378 I
e caeRem4.Crem_Contig15    37501  89 -  1794024 I

a score=373.000000
s ce10.chrX              2432486 4 + 17718866 CATT
s caePb3.Scfld02_0       3168800 4 -  4147112 CATT
i caePb3.Scfld02_0      I 61 C 0
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865 74 -   484378 I
e caeRem4.Crem_Contig15    37501 89 -  1794024 I

a score=-379.000000
s ce10.chrX              2432490 6 + 17718866 CAATGA-
s caeRem4.Crem_Contig15    37590 6 -  1794024 CACTGA-
i caeRem4.Crem_Contig15 I 89 C 0
s caePb3.Scfld02_0       3168804 4 -  4147112 ---TAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    436865 74 -   484378 I

a score=45606.000000
s ce10.chrX              2432496 329 + 17718866 TGATTTGAGAGTGTAGGGATAGGAGAAG--CGGGCGCAACTGCACAAGCCTCTAGCACCGCACACATACGCGAGCGCGCGCGCGCGTCGTCCAGCACACCTCGTCCTCTTCCTCTCCTCCCGACTTTCCTCCGTTCAGCACACTCTCGCCAATCTCTTACAGTAGCAACAGCAACACAAGGCCCC-TCATTGCAAAACGCAAAAAAAGTGAATGAGGAGAGGG-AAAAGATAGAGAACACCTT--GACGAGACACCGTTTCGTCAGAAGAGAGATAGAGAA--TTCGGGCAGTCAAAC-ACATCGATAG---TGAGATGCAAATCG---AATGGAAA------------CGAGAGA
s caeRem4.Crem_Contig15    37596 295 -  1794024 TATCATGAAAGAGTATGGAGA---------AGGAGGCAACTGCACAAGTCTTcca-aacacacacacatac--------cCTCTCTTCGAGCAACACACCCG-TCGT-----------CCCGATTTTCTTTCGTTCACCACACTCCAGGCAATTTCATACAGT------AGCAGCCCC--GCGTTAGCATTGcaaaaaacgaaaga--------gagaGATGG-AAAAGATGGAGAGTGGCATATGAGAAGATAGTACTTGAATAACGGAGAGATAGACATT-TTGATGCAGTTAAACCCcgtcaataattttgaaatgcaAATCGCAATCGGGATG-------------GAAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436939 311 -   484378 TGATTTGAAAGTGTTTAAAGGGAGGAA---TGGATGCAACTGCACAAGCCTTcaa-aacacacacacacaaa-------acgCTCTTCGGCCAACACACCTC-TCCTCTCT-------CCCGGTTTTCCTCCGTTCAGCACACTCTCGGCAATCTCATACAGT------AGCTGCACAAGGCCTCAACACTAGCAAAATAGGAAAA--TTGAAAGGGAGGTAG-AAAAGATGGAGAACACTCCG-AATGATACAGTATGTGATATTTTGAGGAATAGAGAAA-CTGAGGCAGTTAAAC-GCATCGGAAGTGTTGAGATGCAAATCG---GTTGAGTA-----------GTGAAAGA
i caeSp111.Scaffold582  I 74 I 336
s caePb3.Scfld02_0       3168808 310 -  4147112 TGATTTGGAAGTGTTTCAAAGAAGGGAAATCGGACGGGAAAGCACAAGCTTTCAA-AACACACACAT------------ACGCTCTTTGGCCAACACACACC-TCGTCTTTCTC----CCCGGTTTTCCTTCGTTCAGCACACTCTAGGCAATCTCATACAGT------AGCAGCACAAGGCCTCAGCACAACCgaaaaagggaga---------agagatggaaaaagatggaaaaccCTACG-GATCAGATAGTACTTGATAGATTGAGaggaaaatacatttttggcAGGAAAAC---------AGTGTTGAAATGCAAATTA---GTTGTATGAGAGGAAACCCGGGAAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I

a score=678.000000
s ce10.chrX              2432825 21 + 17718866 -----TGACTGGCTTGTTTTAAACCA
s caeRem4.Crem_Contig15    37891 18 -  1794024 --------AGGGTGCGGTTCAAACTA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3169118 26 -  4147112 TCAAAAGAATAGCGTATTTCAAAACA
i caePb3.Scfld02_0      C 0 I 407
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    437250 336 -   484378 I

a score=221.000000
s ce10.chrX              2432846 12 + 17718866 ACGGTGGGGGAA
s caeRem4.Crem_Contig15    37909 12 -  1794024 ACttcgagaaaa
i caeRem4.Crem_Contig15 C 0 I 232
e caePb3.Scfld02_0       3169144 407 -  4147112 I
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    437250 336 -   484378 I

a score=0.000000
s ce10.chrX              2432858 683 + 17718866  
e caePb3.Scfld02_0       3169144 407 -  4147112 I
e caeJap4.Scaffold18213   169177 619 +   720316 I
e cb4.chrX              17181465 999 - 21540570 I
e caeSp111.Scaffold582    437250 336 -   484378 I
e caeRem4.Crem_Contig15    37921 232 -  1794024 I

a score=49.000000
s ce10.chrX              2433541 37 + 17718866 CCAAGTCGCAAGGTCATAAATATTGGAGATAGCCCCC
s cb4.chrX              17182464 37 - 21540570 CTAACTCGACATATCATAATTCTTATTGTCATTGTTA
i cb4.chrX              I 999 C 0
e caePb3.Scfld02_0       3169144 407 -  4147112 I
e caeJap4.Scaffold18213   169177 619 +   720316 I
e caeSp111.Scaffold582    437250 336 -   484378 I
e caeRem4.Crem_Contig15    37921 232 -  1794024 I

a score=1407.000000
s ce10.chrX              2433578 3 + 17718866 CGT
s cb4.chrX              17182501 3 - 21540570 CGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    437586 3 -   484378 CGC
i caeSp111.Scaffold582  I 336 C 0
s caePb3.Scfld02_0       3169551 3 -  4147112 CGC
i caePb3.Scfld02_0      I 407 C 0
e caeJap4.Scaffold18213   169177 619 +   720316 I
e caeRem4.Crem_Contig15    37921 232 -  1794024 I

a score=86667.000000
s ce10.chrX              2433581 158 + 17718866 AACCCACCTAGTTCGATATTATCAGTGATCAATTGGGTGTGGAGGTATGTTCTGATGTTCCCGTCTTCTTCTGGCTGAGCAGCTTCCAGGTAGTCCAAAGATGATTCAATATCTCCTTCTCGTAAATCACTAACAATTTGTTGAAGTGTGTCCGGCTC
s cb4.chrX              17182504 158 - 21540570 AACTCACCCATCTCTATACACTCGATGATCATCTGAGTTTGTAACGATTTTCTTAGCGAATGCTCTTCAGCAGGCTGCGCCGATTTGATAAACTCCAGTGACGACGAAATATCTCCACCTTGTAGATCTTCAACTatcgttttcaatttttccggatc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    38153 158 -  1794024 AACCTACCTAGTTCGATACAATCAGTAATCATCTGAGTTTGTAGAGATCTTCTCAGAATTCTCTCATCTGCAGGTTGGTATGTTTCGAGATAATCTAATGATGATCCGATATCTCCCTCTCGCAAGTCGACAACAATTCTTTGAAGTATTTCCGGCTC
i caeRem4.Crem_Contig15 I 232 C 0
s caeSp111.Scaffold582    437589 158 -   484378 AACTCACCAGATTCGATGCAATCGGTGATCATTTGAGTCTGCAAAGATTTCCTAAGTGCTTCCTCTTCTGGCGGACGAGTTTTTTCGAGGTATTCTAACGAGGAAGTGATATCTCCGTCTTCCAGATCCAAAACAATTTGTTTGAGAGTATCAGGTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3169554 158 -  4147112 AACTCACCATCTTCGATACAATCGGTGATCATTTGAGTTTGCAAAGATCTTCTGAGTTCTTTCTCCTCAGGGGGTCGTTCTCGTTCAAGATATTCTAACGATGATGCGATGTCTCCAACACGTAAATCAATAACTATCTTTTGAAGAATATGGGGTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   169796 158 +   720316 aactcacCCATTTCAATGCAATCCGTAATCATCTGTGTCTGAAGTTTACTCCTCAAAAATTTCTCCTCTGTGGGGTGCCACGTTTCGAGATACTCTAACGAGGAGCAAATTTCTCCATCCCGTAAATCATCAACAATTTGTTTCAGTGTATACGGATC
i caeJap4.Scaffold18213 I 619 I 1695

a score=15640.000000
s ce10.chrX              2433739 435 + 17718866  
s cb4.chrX              17182662 423 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    38311 549 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    437747 490 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3169712 611 -  4147112  
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold18213   169954 1695 +   720316 I

a score=-2519.000000
s ce10.chrX              2434174 9 + 17718866 AAAAGTAGT-
s cb4.chrX              17183085 1 - 21540570 --------t-
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold582    438237 7 -   484378 ---ttcggtG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3170331 7 -  4147112 ---tttggtG
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e caeRem4.Crem_Contig15    38860 8 -  1794024 I

a score=8034.000000
s ce10.chrX              2434183 16 + 17718866 GTGTTTTGTTTGCTCA
s cb4.chrX              17183092 14 - 21540570 GCG--CTGTTTGCTCA
i cb4.chrX              I 6 I 56
s caeRem4.Crem_Contig15    38868 16 -  1794024 GCGATCTGTTTGTTTA
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    438244 16 -   484378 GCGATCTGTTTGTTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3170338 16 -  4147112 GCGATCTATTTGTATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I

a score=12901.000000
s ce10.chrX              2434199 88 + 17718866 GTTTTTGCCCGCTGATGTGTCACAATCACACACACACAAAG---------CGT-ATTTTTCGTAAGAGCTATTTGCTCAAAGCACAAAGAGCAGTTCC
s caeRem4.Crem_Contig15    38884 88 -  1794024 GTTCCTTTCCCTTTGTGTGTCAGAATCAT------ACAAAA--CGACTTTTGT-GTTCTTTAAAGA-ACAATTAGTTCATGACAGAAACATCATGTCC
i caeRem4.Crem_Contig15 C 0 I 41
s caeSp111.Scaffold582    438260 90 -   484378 GTTTACACAGGTTTATGTGTCACAATCAT------ACAAAGGCCGACgtttgtgatttttgaagaacgCA--AAGTTCGCAACACAAACATCACTTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3170354 88 -  4147112 GTTCCTGCTTGCTGATGTGTCACAATCAT---------AAGCCCGACTTTTGT-ATTCTCTCAAAACATAATAAGTTCACGACACAAACATCACTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e cb4.chrX              17183106 56 - 21540570 I

a score=302.000000
s ce10.chrX              2434287 2 + 17718866 GA
s caeSp111.Scaffold582    438350 2 -   484378 AA
i caeSp111.Scaffold582  C 0 I 31
s caePb3.Scfld02_0       3170442 2 -  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e cb4.chrX              17183106 56 - 21540570 I
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=37.000000
s ce10.chrX              2434289 4 + 17718866 ATAG
s caePb3.Scfld02_0       3170444 4 -  4147112 GAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e cb4.chrX              17183106 56 - 21540570 I
e caeSp111.Scaffold582    438352 31 -   484378 I
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=0.000000
s ce10.chrX              2434293 396 + 17718866 TTTGGAATAAGAAAACTAGCATATTGCTAAGTTGAATGATTTATCTGAATTTGTTTTCTGAAAAAACATTTTTTTTCTGTTCTGGATATTTTAAACGTATAGTTTCAAATTGTTCAACTTTTTATAGCGGTTTCAAAAGGGGATCTGGGTAATGACTTTttatcgtctcttattgcatattttgtggtttatttttaaaagttttgttaataaaaatacagttaaagctgatagttggccaaatatgactaaagttagcctacctttaaaAAAAAAGTTTCCTAAAAACTGCCGTTTTTAATTTTTTTTTGAGAAGTCTTTTTACAAAACTCGTTCATTTAGGCGAAATTCGTTTTTAAAAAATGTCTGGTTTTGCTCTGTTTTTCTCTCTCCCTG
e caePb3.Scfld02_0       3170448   0 -  4147112 C
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e cb4.chrX              17183106  56 - 21540570 I
e caeSp111.Scaffold582    438352  31 -   484378 I
e caeRem4.Crem_Contig15    38972  41 -  1794024 I

a score=439.000000
s ce10.chrX              2434689 20 + 17718866 ACCACTTCCAATTTTTTCAA
s cb4.chrX              17183162 17 - 21540570 ATCACTTCCAAGTGTTC---
i cb4.chrX              I 56 C 0
e caePb3.Scfld02_0       3170448  0 -  4147112 C
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e caeSp111.Scaffold582    438352 31 -   484378 I
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=-662.000000
s ce10.chrX              2434709 10 + 17718866 -ATTCTCTAGA
s cb4.chrX              17183179  6 - 21540570 -GCTCTT----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3170448 11 -  4147112 ATCCCTTCAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   169954 1695 +   720316 I
e caeSp111.Scaffold582    438352 31 -   484378 I
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=91.000000
s ce10.chrX              2434719 1 + 17718866 T
s caeJap4.Scaffold18213   171649 1 +   720316 T
i caeJap4.Scaffold18213 I 1695 C 0
e caePb3.Scfld02_0       3170459 0 -  4147112 C
e cb4.chrX              17183185 0 - 21540570 C
e caeSp111.Scaffold582    438352 31 -   484378 I
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=180.000000
s ce10.chrX              2434720 1 + 17718866 T
s cb4.chrX              17183185 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    438383 1 -   484378 T
i caeSp111.Scaffold582  I 31 C 0
s caeJap4.Scaffold18213   171650 1 +   720316 C
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3170459 0 -  4147112 C
e caeRem4.Crem_Contig15    38972 41 -  1794024 I

a score=22574.000000
s ce10.chrX              2434721 279 + 17718866 TCACCTTTTTCAGCGCAACTCCTGTATCGGTTAGCCCATTACACATTGAAAAGTCGTAAATCATCGCTATCGTGAGTTGTCTGCTCAACTTGGAGTCATTCAAATCGAAAGTTCCCCTAAATGGAGTAATGAAATGCCGG----------TCCACCTGTTTGTCAATAAGCCTTCCCATTTTTG--------ATATATGCAAATGCATCAGT-----TTGTGATGGGATGCTGCTTCTTTCGCCACTTTTGCTGCCCGCTCCGCCGCCGTTTCCATCAATATCTGGCCTGTTATAGAAA---CTT
s cb4.chrX              17183186 279 - 21540570 TTACCTTTCTCATAGAATCACCAACAGAGCTGAGTCCAGTGCTCATCATATAGTCAAAAATCAACGCGAACCCCATATCCCTCctattcctttttctttccaacTCCGGCGACGGTCTGAACGG----------CTTCTTCGTGGGATGCTCGAACTCTGTGTTAAtatattttcccaatttta--------gAATGGTGTGCTGAAGGTCT-----CTATGATAATCGGTAGCCTCATAGACCAGCTTAGCCGCCCGCGTTGAAGTCTCCTCAATCAGTATCTGACCCATCACTGAGA---TTT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15    39013 282 -  1794024 TTACCTTTTTCAGCATCTCGCCAACAGAACTCAGTCCAGTGCACATTGCATAATCATATATCATTGAGTAACCAAgtgtccttctttttttccttttttcaagatCCAGTGGTCCGTAGAATGGAGT--TAATATTTCCTTG--------TCAAACTGACGTTCCACACATCTTCCTATTCTCACGACAGGTAAATGAAATGTTCGGTGTTTTTCAGCTATGTCCTTCGTTAACTGCAT-----AGCTTTTCCTGCTATGTT--------TTCCATAATAATTTGTCCAGTGACTGACACAGTGT
i caeRem4.Crem_Contig15 I 41 I 9
s caeSp111.Scaffold582    438384 273 -   484378 TTACCTTTTTCAACGCCGAGCCAACACCATTTAGGCCGGTGATCATTGTGTAATCGTAAATCAAGTTGAAACCAA-----CAACTCTTCTTCCTTGTGACCATGTTAGATCGCATATTGATGTAAAA--TGAGGATTCGG---------TTCCGCATGCTTATCTATcacttttccattcttcg--------aAACATACAAGTGTATGTTT-----TTATGAAAGTCTGATGCTGCTTTTGTCAATTTCGCTGCCCGAGCTGCCACATTTTCTATTAGAATTTGCCCAGTTACTGACA---CCT
i caeSp111.Scaffold582  C 0 I 160
s caePb3.Scfld02_0       3170459 278 -  4147112 -TACCTCTTTTATGAGCTCTCCAACTGAATTCATTCCATTACACATGACGTAGTCGTAAATCAATCCGCATCCAA-----CTTCCTTTCTCCGGGGTGAGGAAGTCAAATCGCAGTAGACTTTGAAT--TGAGGAGCCGGCG---ACAATTCAAAATGCCTATCTATATGTTTCCCCACTTTCG--------ATAGGCTCGTGTGAATTTCT-----TTATGATACTCCGATGTATCCTTTGACAGTTTTGCTGCTTTTTCAACTGCACCCTCAATCAGAATTTGCCCTGTTACTGAGA---CAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   171651 279 +   720316 TTACCTCTTTTAACACTTCTGCAGTTCCGTTCAAACCATCTGTCATCAGCAAATCGTATATCATTGA-----CAATGATTGTTCTTTTCCCGGTGGTATGTACACCAAATTGCGTTTTAATTTG-----AAAGATACCCATGGAAATGTGTCTAAATTTCGATCCAGcgttttttgaagtttca--------cCAGAGCAAAATGTATCGTT-----TTATGGCAAGTTGCTGATtctttcactaattttttggCTCGCTCCGATGCACCCTCCATCAGTATTTGACCCGTTATCGATA---TCT
i caeJap4.Scaffold18213 C 0 C 0

a score=476.000000
s ce10.chrX              2435000 1 + 17718866 C
s cb4.chrX              17183474 1 - 21540570 C
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig15    39304 1 -  1794024 T
i caeRem4.Crem_Contig15 I 9 C 0
s caePb3.Scfld02_0       3170737 1 -  4147112 C
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18213   171930 1 +   720316 C
i caeJap4.Scaffold18213 C 0 I 6
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=-2497.000000
s ce10.chrX              2435001 18 + 17718866 CTCGAGATTATAGTTGAG
s cb4.chrX              17183475  9 - 21540570 CTTGGGATT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    39305  7 -  1794024 CGTAAGA-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   171937 13 +   720316 TTCTGCATTATCA-----
i caeJap4.Scaffold18213 I 6 C 0
e caePb3.Scfld02_0       3170738 18 -  4147112 I
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=4639.000000
s ce10.chrX              2435019 54 + 17718866 GAACAGTTTAGTGCGCATGTTGATCAACGAATTTTCCACCATTTCTAGA---------T-TTTT
s cb4.chrX              17183484 45 - 21540570 GAAAAGCTCATCCTTCATCGCGGTTAAAGtgttt---------tctaat---------t-tctc
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15    39312 45 -  1794024 -AATAATGCATCTCGCATTTTATACAACCGTTCC---------TCTATC---------TGTTTT
i caeRem4.Crem_Contig15 C 0 I 6
s caePb3.Scfld02_0       3170756 54 -  4147112 GAACAACTCGTCTCGCATTGTTATTAAGGAATTTAGATGTatatctaaa---------t-tttt
i caePb3.Scfld02_0      I 18 I 95
s caeJap4.Scaffold18213   171950 53 +   720316 -AACAATTCATCTCGCATTATCTCTAATGAGCTC---------TCTAAAGATATCAAGT-TCTT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=185.000000
s ce10.chrX              2435073 6 + 17718866 CGACCA
s cb4.chrX              17183538 6 - 21540570 CACCCA
i cb4.chrX              I 9 C 0
s caeJap4.Scaffold18213   172003 6 +   720316 GTGCCA
i caeJap4.Scaffold18213 C 0 I 63
e caePb3.Scfld02_0       3170810 95 -  4147112 I
e caeSp111.Scaffold582    438657 160 -   484378 I
e caeRem4.Crem_Contig15    39357 6 -  1794024 I

a score=60.000000
s ce10.chrX              2435079 2 + 17718866 AT
s cb4.chrX              17183544 2 - 21540570 AC
i cb4.chrX              C 0 I 34
e caePb3.Scfld02_0       3170810 95 -  4147112 I
e caeJap4.Scaffold18213   172009 63 +   720316 I
e caeSp111.Scaffold582    438657 160 -   484378 I
e caeRem4.Crem_Contig15    39357 6 -  1794024 I

a score=-319.000000
s ce10.chrX              2435081 51 + 17718866 TAATGAGATATTCGCATGCGTTGAATCTAATTTCTCCCGCGCAAGCCCGAA
s caeRem4.Crem_Contig15    39363 41 -  1794024 TGGAGAGAATTTCCT----------TCTATCTTTTCAAACTCGGTCTGCAA
i caeRem4.Crem_Contig15 I 6 C 0
e caePb3.Scfld02_0       3170810 95 -  4147112 I
e caeJap4.Scaffold18213   172009 63 +   720316 I
e cb4.chrX              17183546 34 - 21540570 I
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=1176.000000
s ce10.chrX              2435132 9 + 17718866 TTGCGTTGA
s cb4.chrX              17183580 9 - 21540570 TTGTGTTAT
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig15    39404 9 -  1794024 TAGTGTTGT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3170810 95 -  4147112 I
e caeJap4.Scaffold18213   172009 63 +   720316 I
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=-2437.000000
s ce10.chrX              2435141 24 + 17718866 CC-TTCTCCTCTTGTCTACAATTGA----
s cb4.chrX              17183589 25 - 21540570 CCGTTCCACTTGTTTTATAACCTCC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    39413 25 -  1794024 TTTTGCTTCCAGTGTCTTCAATTTG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   172072 28 +   720316 -cctttgtctttttttcgcattttgcTGA
i caeJap4.Scaffold18213 I 63 C 0
e caePb3.Scfld02_0       3170810 95 -  4147112 I
e caeSp111.Scaffold582    438657 160 -   484378 I

a score=-1829.000000
s ce10.chrX              2435165 3 + 17718866 --ACA
s cb4.chrX              17183614 3 - 21540570 --ACA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15    39438 3 -  1794024 --AGT
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    438817 3 -   484378 --ACA
i caeSp111.Scaffold582  I 160 I 5
s caeJap4.Scaffold18213   172100 3 +   720316 TTG--
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3170810 95 -  4147112 I

a score=105901.000000
s ce10.chrX              2435168 473 + 17718866  
s cb4.chrX              17183620 442 - 21540570  
i cb4.chrX              I 3 I 634
s caeRem4.Crem_Contig15    39444 442 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    438825 423 -   484378  
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3170905 440 -  4147112  
i caePb3.Scfld02_0      I 95 C 0
s caeJap4.Scaffold18213   172103 441 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=5751.000000
s ce10.chrX              2435641 8 + 17718866 TAGAACAA
s caeRem4.Crem_Contig15    39886 8 -  1794024 TGGAACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439248 8 -   484378 GAGAACAA
i caeSp111.Scaffold582  C 0 I 599
s caePb3.Scfld02_0       3171345 8 -  4147112 GAGAACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   172544 8 +   720316 tagaacaa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17184062 634 - 21540570 I

a score=267.000000
s ce10.chrX              2435649 5 + 17718866 GTTTT
s caeRem4.Crem_Contig15    39894 5 -  1794024 GTTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3171353 4 -  4147112 -GTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   172552 5 +   720316 gtttt
i caeJap4.Scaffold18213 C 0 I 3684
e cb4.chrX              17184062 634 - 21540570 I
e caeSp111.Scaffold582    439256 599 -   484378 I

a score=875.000000
s ce10.chrX              2435654 4 + 17718866 GAAT
s caeRem4.Crem_Contig15    39899 4 -  1794024 GGAT
i caeRem4.Crem_Contig15 C 0 I 392
s caePb3.Scfld02_0       3171357 4 -  4147112 GAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17184062 634 - 21540570 I
e caeSp111.Scaffold582    439256 599 -   484378 I

a score=944.000000
s ce10.chrX              2435658 126 + 17718866 GACACAAGCTTCCCTTGCAAAACCCCCTCACTGAATAGG--------TAGGAAATCGGAACGGAGTGGATTACAACAAACAGTGACAAAAAGTATTAGAGACAAATGAGCATTATT-----GAATATTTTTTCGTATTG
s caePb3.Scfld02_0       3171361 134 -  4147112 GATTCAAG---TCAGCGCTAAA--CAGTCATGGAAAAGACAAAGGGTTATGGAAATAGAAGGGAATGGAATAGAATGCAGAACAAAACGGGACACTGAGAACAAAGAGGAATTAGTTGTCGGAATGTTTATTCGAAATG
i caePb3.Scfld02_0      C 0 I 1295
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17184062 634 - 21540570 I
e caeSp111.Scaffold582    439256 599 -   484378 I
e caeRem4.Crem_Contig15    39903 392 -  1794024 I

a score=0.000000
s ce10.chrX              2435784 1462 + 17718866  
e caePb3.Scfld02_0       3171495 1295 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17184062  634 - 21540570 I
e caeSp111.Scaffold582    439256  599 -   484378 I
e caeRem4.Crem_Contig15    39903  392 -  1794024 I

a score=39.000000
s ce10.chrX              2437246 39 + 17718866 TTTTCATATTTGATTGTTTATGCCAA-TATTGACGACCGA
s caeRem4.Crem_Contig15    40295 33 -  1794024 TCTTCTGATTTTCCTCTTCATTCCAACTATCAA-------
i caeRem4.Crem_Contig15 I 392 C 0
e caePb3.Scfld02_0       3171495 1295 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17184062 634 - 21540570 I
e caeSp111.Scaffold582    439256 599 -   484378 I

a score=-225.000000
s ce10.chrX              2437285 113 + 17718866 TTTGTTTACGTACGAAATCAATATGCTAA----ATGAAATATAAACTAACTCCGTTC---------ACATTACTGTTATGAATATCATCAACAAATGCATATAAATTGGCTTGATTGAAATGGAGA
s cb4.chrX              17184696 100 - 21540570 TTTGTTTATGC----ATCCAATTCtataatatttcagaatataaACGAAC-CCGTTC---TCTACTCCATCACCAC----ATGAT--TAAATTACTGATGACAAACTAATAGGA------------
i cb4.chrX              I 634 C 0
s caeRem4.Crem_Contig15    40328 102 -  1794024 -TTGTTTATA-----ACTGAAAACGGTAG----TCATAACATAAACGAA--CCGTTCAAATGTAATGGATCTTTGTTATGATGATCCTCAATTACTGA----AAACTAATAGGATGGA--------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3171495 1295 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e caeSp111.Scaffold582    439256 599 -   484378 I

a score=-1479.000000
s ce10.chrX              2437398 12 + 17718866 AAAACACATCTA---
s caeRem4.Crem_Contig15    40430  1 -  1794024 -----------G---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439855 12 -   484378 AAAACAAA---ACTC
i caeSp111.Scaffold582  I 599 C 0
e caePb3.Scfld02_0       3171495 1295 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17184796  0 - 21540570 C

a score=38289.000000
s ce10.chrX              2437410 177 + 17718866 AAATCTAAACAG-----AA-----TAAGTG------ACCGTATGTTGAA-----------ATGTTTTTGGGACCTTCAAAGATT--------------TCATATGTGTT----------TCTATTAT--------ATTAGTATTTGAAGTGTGGGTACTTTAGCTGATCAAACG----AATCGGGCTAC-------GTTGTTGAGAATATG-TCCTTATATGCTCAGAAACAAGCAATTCAAATAAAG
s cb4.chrX              17184796 215 - 21540570 AAATCTAAACAATTCGGAG-----TAAACC-AGT--GCATCCAGTTAT----------gcatttttctaaa--ttattaGGGGC---------GAGCTTTTTGAAGATTCCTATCAATTTCGTTCTGGCTT----ATGAGTATTCAATGTGTGGACACTTCAGCTGGTCAAACTCCGAAACCGGTCTCTTTCTCCTTTTATCAAGAGTAGCTGCTCTATGTGCTTAGCTACATGCAATCCAAATAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    40431 211 -  1794024 AAATCTaaacaaattaaaa-----taaaCG-AAT--AAGATCCGTTGCA-------GAGAATGTCCCCAA----CATTACGGATTCTTTGTCGAAGGGATATGGAGATT-------ATTTCAGTCATGATTAATCATAAGGATTCCATATGTGGACACTTCAGCTGGTCAAACC----AACCGGTCTCT------TTTTATCGAGAGTAGC-ACCTTATGTGCTTAGCTACACGCAGTCCAAATAGGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439867 197 -   484378 CAAACTAAACAAATTTTCG-----TAAACGTAGG--AAAGCGCATTGAA-------TTCaccttttctgaaaaccttGAGGGAT--------------ATGTGTGATTT------------TGTTGTGAGtaatcttgaaaatttcgaatgtGGACACTTCAGCTGGACAAACC----GACCGGTCTCC------TTTTATTGAGAGTACC-ACCGTATGTGCTTAGCTACATGCAATCCAAATAAGG
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3172790 211 -  4147112 AAATCTAAACAATTCCTGAAGAATTGAAGTTAGGGTAAAAGAAGTTGAACGgggctttgaaattttcaaagatttgtgAGGGAT--------------TTGTGTAAACT------------TGTTCTGAGTAAtcgttgaaattttgaatgtagACACTTCAGCTGGACAAACC----AACCGGTCTCC------TTTTATCAAGTGTACC-ACCGTATGTGCTTAGCTACATGCAATCCAAATAAGG
i caePb3.Scfld02_0      I 1295 I 54
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=-15530.000000
s ce10.chrX              2437587  25 + 17718866 ------------------GTACGAGAACA----------------------------------------------------------------GTAATATGAATAAT------------------------------------
s cb4.chrX              17185011  43 - 21540570 GGA--GAGTATTTGTTTGTTCCTAAATCA-----------------------------------------------------------------------------TCTCGCCGTTCAA-------------AGC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    40642 132 -  1794024 TGGTTTTATATTTATTTGCTCCTAAATCATCCTACTTCGTCCTTCTTGGTTGAATGAGGTGGATTTGAAGGCTGTTGGAGTTACGGATACATTATTATGTgatcttttttgcttttttatcGGGCG---ATGAAC--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    440067  53 -   484378 -------gtatttattcttttctataTCA-----------------------------------------------------------------------------------TCTTTTATCGGACGTTCATTaatatcaaatc
i caeSp111.Scaffold582  I 3 C 0
e caePb3.Scfld02_0       3173001  54 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=24761.000000
s ce10.chrX              2437612 205 + 17718866 AAAATGAT-------TTGGTTT-----------------------------------------TTTT-----------------------------------TGT---------AGA-----AAATCTCA--CATCAATGGTCACATCAAT---ATAACTATCAACAA--AAAAACTTTATGATTCATGTTTGCCTTAGTAGTTCTCAAAAGAACAAGGC-----GCTGAGATAT---TTTTCGAAATCTATGGGGCGGAAATCTGAATGCTC--TAGTAAAA-----------ACACAAGGACACTATGAAAAATTATTGCGGAGGAAC
s cb4.chrX              17185054 223 - 21540570 AGAATT---------TGGATTC--------------------GATACAGC-------------TTTT-----------------------------------TCCCAT------AGA-----AGATTCTCAAAACGGAAGGTCATCTGAACGCAAAATAAATCGACAAAGAAAAGCTTTATAGCTCGTGTTTGACTTggtaatttt---tcattgaagGCCACTTGTTAAG--------AGAGAAACTCGATGGGGCGG-AATGTGAAGGCtcttttatgaaaaaaaagatcctCGACAAGGGC------AAAACTTCTACGAGGGCAC-
i cb4.chrX              C 0 I 1008
s caeRem4.Crem_Contig15    40774 208 -  1794024 AAAACG---------GCGATTC--------------------AATAAATG-------------T---------------------------------------------------GA-----GGATTCCC--ACCAAAAGGCCATTGCAAT---AAAGCAATCGACA---AAAAGCTTTATTGCTCGTGTTTGACTtggtaatttcaaaaaacgcaaGGCCACTTGTTGAGAAGT---AAGGGAGAGTCGATGGGGCGG-AATGTGACGGCTC--TTATAAAAAA---------CGACAAGGACGCCATGAAAAATTATGTGAAATGAA-
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    440120 296 -   484378 aaaatgagatacattttggttttgaagttATT--GCTTTTTGGATAGATGTACAATATT----CTTTATAGCTATAGTCACATATAGCGAACAAAACGCCGATTCAATAAAACGAGA-----GGATTCCC--AGCGGAAGGTCATTTCAAT---GAAGCTACCTACA---AAAAGCTTTATGGCTCGTGTTTGACG-----ATTTCAAAGGAAACAAGGCCACTTGGTGAGAAGTGAGGAAGTGGAATTGATGAGGCGT-AATGAGATGgctc--tcagaaaaaaaag------aagcaaggACGCTATGAAAAATTATGGGAAActaa-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3173055 298 -  4147112 aaaatggtttagA--TTGGTTCAAAAGCTATTGGGCTTTTTGAATTAATG-ACAAGtcgaaacttttatttccgTAGTCAC--ATCGCGAAC--AATACT--TTCGATTCAATAAAACACCCTGATTCCC--AACGGAAGGTCATTTCAAT---AAAGCTATCGACA---AAAAGCTTTATGGCTCGTATTTGATTTGGC-CATTCAATGGGAACAAGGACACTTGGTGAAAATCGGAGAAGTAGATTTGATGAGGCGG-AATGTGATGGctc--ttatgaaaaa---------acacaagGACGCTATGAAAAATTATGGG-AATTAA-
i caePb3.Scfld02_0      I 54 C 0
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=1254.000000
s ce10.chrX              2437817 10 + 17718866 G-AGGAATGAG
s caeRem4.Crem_Contig15    40983 10 -  1794024 GAAGGATCGA-
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    440416  9 -   484378 --aagaatgag
i caeSp111.Scaffold582  C 0 I 884
s caePb3.Scfld02_0       3173353  9 -  4147112 --AAGAGTGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17185277 1008 - 21540570 I

a score=121.000000
s ce10.chrX              2437827 20 + 17718866 -GGCTGTAAAAATGTAAGAAA
s caeRem4.Crem_Contig15    40993 19 -  1794024 --TGTGTGAGAATATTAGAAA
i caeRem4.Crem_Contig15 C 0 I 899
s caePb3.Scfld02_0       3173362 17 -  4147112 CGCCGATGGGAA----AGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17185277 1008 - 21540570 I
e caeSp111.Scaffold582    440425 884 -   484378 I

a score=270.000000
s ce10.chrX              2437847 111 + 17718866 A------------TCAGATTGGATACGGATCGTTTGAGGTAAAATTGGaaaaaa-----------aatattttgaaaattaatatttCACCATTTTCAATTTTATGGAAACTGTCAATAATTGGAAAAAAATCG
s caePb3.Scfld02_0       3173379 125 -  4147112 ACACTATGAATCTTCCGATTAGA-----ATCTTAACGGGTCAATTTCAAAGGGATTTTCTCTTTGAAGATTGTAATAAAGAAAatattacaatttt---ttttgagggaacT-TCATTCAAATGAAAGACATCG
i caePb3.Scfld02_0      C 0 I 6638
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17185277 1008 - 21540570 I
e caeSp111.Scaffold582    440425 884 -   484378 I
e caeRem4.Crem_Contig15    41012 899 -  1794024 I

a score=0.000000
s ce10.chrX              2437958 1117 + 17718866  
e caePb3.Scfld02_0       3173504 6638 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e cb4.chrX              17185277 1008 - 21540570 I
e caeSp111.Scaffold582    440425  884 -   484378 I
e caeRem4.Crem_Contig15    41012  899 -  1794024 I

a score=46.000000
s ce10.chrX              2439075 4 + 17718866 GTTG
s cb4.chrX              17186285 4 - 21540570 GTCT
i cb4.chrX              I 1008 C 0
e caePb3.Scfld02_0       3173504 6638 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I
e caeSp111.Scaffold582    440425 884 -   484378 I
e caeRem4.Crem_Contig15    41012 899 -  1794024 I

a score=8168.000000
s ce10.chrX              2439079 82 + 17718866 TTATAAAACTGGAAACCTCCAATTCAT-ATTGTTA--AGCGGGTCGAGCAAAAATATGCTTGATTTCAGGTCTTCTGGAAATGTT--------
s cb4.chrX              17186289 84 - 21540570 TTATGCACCAAGAAACCTCCAATTCATAATTGCAGG-GCGTGCCCGAG-AATCGCTCGTTTTgc-----g--ttctgaaaaatgggagaTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    41911 89 -  1794024 TTATACAGGTGGAAACCTCCAGATCATAATTGTTTT-GGGGGGTAGAGCAAACGC-CGTTTTGTTTGAGA--TCCTGAAAAACGAAAGATGTG
i caeRem4.Crem_Contig15 I 899 C 0
s caeSp111.Scaffold582    441309 81 -   484378 TTATATTTCTGGAAACCTTATACTCAT-GTTGAAGGAAAGGTGTTGAGCAAAAGC-CGTTTGGTCTGCGA--TTCTGTAAATTTG--------
i caeSp111.Scaffold582  I 884 C 0
s caePb3.Scfld02_0       3180142 81 -  4147112 TTATACTGCGGAAAACCTCCGGTTCATAGTCGTTTGAGAGGGGTTGAGCTGAA-T-TGCCTGGTTTGAAA--CTCTGTAAAGTTG--------
i caePb3.Scfld02_0      I 6638 I 10
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=-3932.000000
s ce10.chrX              2439161 23 + 17718866 CATCTAATTTTCAGTAGGGAAAT
s cb4.chrX              17186373  3 - 21540570 --------TGT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    42000  4 -  1794024 --------TGTT-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    441390 21 -   484378 TATTGTTTTGTT--TAAATGAAT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3180223 10 -  4147112 I
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=2105.000000
s ce10.chrX              2439184 51 + 17718866 TGAAAAAAAAAATTGAAAGCAAATGTGAAAGTCT---TGAGGAGAAATATT-----------GTG
s cb4.chrX              17186376 60 - 21540570 -GGGTCCAGAATGTGAAACAAAATGAAACGGGTC---CGTAG-GAAATgctaggggggggggggg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    42004 49 -  1794024 GGAGTGAATAATGTGGAAC-AAATGTAAAGGGTC---CGGAG-AAAATGTT-----------GAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    441411 40 -   484378 ------------GTGAAAG-AAATTTAAAGGACCACCCAACG-AAAATGCT-----------GAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3180233 44 -  4147112 -TGGTACAAAATGTGGAAG--GATGTGAAGCACC------CG-GAAATGTG-----------GAG
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18213   172557 3684 +   720316 I

a score=-3137.000000
s ce10.chrX              2439235 158 + 17718866 GCTATTCAC----TGCAGTAATATGTCT-----TGAGAGA--------AGGGAG--GCAAAG----GGAGAATCGATAA-CTGCGCAGCACTGGGAAAGAGAAGGGAAGAA--GCTACGG--------ACCCA--GAGGCTACTCTAGGAAATGA---ACGAATTGCACAATTTTCTGCTGCTGTTG--C------------------ATAAAACTT-------
s cb4.chrX              17186436 168 - 21540570 gctattTTCAA--CGCAGTAAT-----------AGgagaaagaagcataaagaa--gaagagaacgagagaatcgataagcaaagggagagagcgttgaagaaaaagaagagcagaagcG--------CTCCTAGTATGTcacatttgaaaatgg-----aaatcgTAAAAACGCCAACTTCTCCTT--C-------------------TAGAACTt-------
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig15    42053 153 -  1794024 GCTATTCTCAGTCCGTAGTAATGCCTCcg----aggagag--------aaagag--gaaga-----agagaatcgATAA-CTGCGCGGCAAAGCGTAGAAAAATAAGCAGA--AGAAGCA--------CCCC---TATGTCACTCTTGAAGATGA-----GAATCACATAAATA-----TACTTTAT--C-------------------TCGAATTA-------
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    441451 160 -   484378 GCCAGTCTC----CGTAGTAATATGTCTT----CGAGGCA--------AGAGAAGTGAA-------AGAGAATCGATAA-CTGCGCGACtaggggaaaaagaaggaaaaga--ggaagaagaagcactCCTTT--GATGGCACTTTTCAAGTTGC-----AAATCGatttgaaa-----ctattttttgc-------------------gAGAACAT-------
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3180277 137 -  4147112 G---------------AACTCTGTCTCTC----TGAGGGA--------ATagag--gag-------agaggatcgataa-gtaagaagagagtgcgcgaggaaagaaaaga--agaagag--------ctctC--AATGAGACCCTCTGAGATGA-----GAATCACacaaata-----caattttt--c-------------------taaTAAGT-------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   176241 165 +   720316 GCTGTTCTC----CGCAGTAATACGTCCTAAGGCAGAGAA--------AAAGAC--GAA-------GGAGAATCGATAA-CTGCGCGAGGAGGATGTG----------GGA--AGAAGCA--------CCAAC-------TACTCTTAAAAATAGGGCAAAAACCACGGAA--------TACTTTTA--TGGTCACTGGCACAGGATAATAAAGtttattaatt
i caeJap4.Scaffold18213 I 3684 C 0

a score=-19127.000000
s ce10.chrX              2439393  51 + 17718866 CA-----ATTCCTGTAGTCAAAG-----------------------------------------------------GATTATGATACGCCACGGAATAATAAAGTATAC-------
s caeRem4.Crem_Contig15    42209  54 -  1794024 CAAGTTTTCTACTCTATTGAATG-------------------------------ACTATCCAGC------------GGTATTAAC------------AACACTGTTTGC-------
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    441618  36 -   484378 -------CCATCTTCAGTCAA--------------------------------------------------------GTTTTATT----------CTAATAAGGCATAC-------
i caeSp111.Scaffold582  I 7 I 3
s caePb3.Scfld02_0       3180421  33 -  4147112 -------TTTTTATTAGTCAAAG-----------------------------------------------------GGTTTCAAT----------------AGGTCTTT-------
i caePb3.Scfld02_0      I 7 I 3
s caeJap4.Scaffold18213   176406 111 +   720316 -----taatttttgtggCAAAAACTAAGGAAAGAAGCcatgtatttaaaaattaattatttagtGCATCTTCTCTATCTCTCATCAACCCGAACAACAAAAACGTATTTATAATGC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17186604  49 - 21540570 I

a score=-2848.000000
s ce10.chrX              2439444 115 + 17718866 ACCAAAA----CACTACATTCTT---CTCTGTCTGGGTGG--CTATTGATTTTC------------ACGGCGCGGGTCACGAGAGTATACATACGGGAA-------GAGGATCGACGGACG--GGAAGTGAAAAGTGTAAGGTGG
s cb4.chrX              17186653 109 - 21540570 GCCAAA---------ACAGTCTC-----CTTCTCGGGT----CTATTGATTTTCGCCCGATCTTTTACGTTC-GGGTCACGAGGT----------AAAA-------GAAGATTGTCCACCCGTGCGGGAAAGATGTATAGGGTGG
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig15    42263 112 -  1794024 ACCAAA-----CTCTCCAGTCT-------TGATGGGGTTTTCCTATTGATTTTC---------TCGGAGAGA-AGGTCACGAGGG----------TATACATCGG-GGAAGTGAATAGACCGTCGGAAAGTGTAGTATTCGGTGG
i caeRem4.Crem_Contig15 C 0 I 112
s caeSp111.Scaffold582    441657  99 -   484378 ACCAAC---------CTATCCTT---------TCGGGtagttttattgattttc------------ccCGTG-AAGTCACGAGGGTTTACTTACGGAAA-------GAGGATCTATTGACG--------GGAAAATGTTCGGTGG
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3180457 116 -  4147112 ACCTAT---------ATATGCCTCAGTTCTCGTTAGGTTTGTCTATCGATTTT-------------GCGGGG-CGGTCACGAGTA------AACGAAAATACAGGGAAGAATAAATCGGCGCGGGAAGTGAAAAGTGTCGGATGA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   176517 117 +   720316 ACCACGACCGGCATTCCATTCCA---TTATTGTTGGGTTG--CTATTGATTTTC------------CCGC---AGGTCACGAGCGTATACACAC-GGCA-------AAGGATTGCTGACGGGAAGTGGAAGGAAGTGTCGGGTGG
i caeJap4.Scaffold18213 C 0 I 4087

a score=-9330.000000
s ce10.chrX              2439559 138 + 17718866 AAAGGGGGGGGGGGGTTCAGGTTATAAACATCATGAAAATTTTAAAT-TAAAAACATATATTTGTTATTCACCGAGTT--TATTAAAAATTATACATTTTTGTAGAATTCTAATTGAAA---------AAAATACAAGATCCAGAGGGCT
s cb4.chrX              17186762  89 - 21540570 ------------------------CCAACAA----ACAATTATATTA-GTAGAAC------TTGTTCCTAGACAACGAGAAGTCAGTGTAATCCCGCTGGGAAAGCGTTATATTTCGAA---------AGAAc-----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    441756  59 -   484378 ------------------------TCAACAT----AAAATTTTATGA-GAAAGAC------TTGTTTT-----AGTTC--AATTAGAAAA------------------------GGGAA---------CGAATC----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3180573 100 -  4147112 ------------------------CCAACAC----AGGATTTAATGACGGAGaac------ttgttttcaagaaatttggaATCATAAAATTCCCGCCGCTATAGCATTTTTACGAGAATTTTTCAAGCGAATG----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e caeRem4.Crem_Contig15    42375 112 -  1794024 I

a score=-80056.000000
s ce10.chrX              2439697 434 + 17718866  
s cb4.chrX              17186851 442 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    42487 468 -  1794024  
i caeRem4.Crem_Contig15 I 112 C 0
s caeSp111.Scaffold582    441815 426 -   484378  
i caeSp111.Scaffold582  C 0 I 19
s caePb3.Scfld02_0       3180673 484 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=1229.000000
s ce10.chrX              2440131 31 + 17718866 TTAATAAAAT-TCAAAGTTCACAAA-TATCCAC---
s cb4.chrX              17187293 33 - 21540570 gggaaaaaagaaaaaacattacAACTTTGTGAC---
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15    42955 31 -  1794024 agaaaaaaag-aaaaacattacaAC-TTGTGAC---
i caeRem4.Crem_Contig15 C 0 I 2
s caePb3.Scfld02_0       3181157 28 -  4147112 -----aaaag--aaaacactaCGGC-TTGTGACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e caeSp111.Scaffold582    442241 19 -   484378 I

a score=25745.000000
s ce10.chrX              2440162 192 + 17718866 GAAATAGCATATGCTTGCAAAACGCAAAGAAACACAAAATTTTGAGAGCA--------AAGAGAAAGCATACA-----------CACGTGAACACCC-----------CGGAAGAATAGGATAC----------AATTTTTCCTC----------TCATACCAACATCCTT-GCAACAATG----C----------------ATGGGTTGCCCTAATTCTGATGACCCAGATTAGCATATGGCA--TTAATGATGTT---------TGCCGGCG
s cb4.chrX              17187329 251 - 21540570 GAAATTGCATATGCTGGGAA---GAAAGAGCACAAAAA---TTGGGAGCacggagaaaagaaaaaaacatacatAATGCAGCGGAAC----CCACTCCAGGCACCGCTAGGAAGAatacaaaatgttttcaatgaGATTTTTCTTCCGGACGATGGGGGACAAAAGTCCTGAAGAATAATG----CAACATGAATTGGCGAACGACGTCCATCTCATTCTGATGACCCAGATTAGCATATGGCATATTAATATTGTT---------TGCCGCCG
i cb4.chrX              I 3 I 2024
s caeRem4.Crem_Contig15    42988 193 -  1794024 GAAATTGCATATGCTGGGAA---gcacaa--aacaaaa---ttgagaGC---------AAAAGAAAGCGTGCA-----------GAC----ACGCTC----AACTGCCTGGAAGAATACGAAGTGTTTTCGGTGAGATTTTCCGT----------GAAACCAGAAAT-----GGAACAATG----C----------------CGGGGGCGTCCTAATTCGGATGACCCACATTAGCATAAAGAAT-TATATATTGTT---------TGCCGATG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    442260 180 -   484378 AGAATTGAATATGCTAGgaa---gcagaaaaa---------ttgagagcaCTA-----GAGAGAAAACATACA-----------AACTCG-ACACTC-----------AGGAAGAA----GAATGTTTCCATTGAGATTTTCCGT----------GAGG----CCGT------CAACAATGACCCC---------CCGCGAACA-----GGCCTAATTCGGATGACCTAGATTAGCATATGACA--TTAATATTGTT---------TGC-----
i caeSp111.Scaffold582  I 19 C 0
s caePb3.Scfld02_0       3181185 193 -  4147112 GAAATTGCATATGCTaggaa---gcagaaaaagaaaat---ttgagagcCGGA-----GAGAGAAACGGGAC-------------------ACACTC-----------AGGAAGAATacgaaatgttttcaaagagATTTTCCGC----------TAGGAGAACAATT----GCAACAATG----C---------AGACGAAC------GTACTAATTCTAGTGACCCAGATTAGTCGTTCGCA--ATAAATATATTACCCGAAAATGG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=1221.000000
s ce10.chrX              2440354  8 + 17718866 -CATTGTTC--------------
s caeRem4.Crem_Contig15    43181 23 -  1794024 CCATTGTCTCGCCACCAAAACAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    442440  8 -   484378 -CATTGTTC--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3181378  8 -  4147112 -CATTGTTC--------------
i caePb3.Scfld02_0      C 0 I 983
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I

a score=-649.000000
s ce10.chrX              2440362 15 + 17718866 TTTTTTTCAGACCCT
s caeRem4.Crem_Contig15    43204 15 -  1794024 CAATTTTCTGATCCT
i caeRem4.Crem_Contig15 C 0 I 76
s caeSp111.Scaffold582    442448  6 -   484378 -AATCTC--------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I

a score=-1066.000000
s ce10.chrX              2440377 77 + 17718866 TGTTATTAAAACAACCGCGTAGAACATTTTTTAACAAAACTAGTAACTATGTGTTTTGAAACTTTTGTGAGTTTTTT
s caeSp111.Scaffold582    442454 39 -   484378 TGGTATTA-------TGCCT----CGTTTCCTAAT-----------TCACGTGGTTTTGAA----------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I
e caeRem4.Crem_Contig15    43219 76 -  1794024 I

a score=-19295.000000
s ce10.chrX              2440454 379 + 17718866 ATTTATATTCTGAAGCATCAATTCTTGCTCAAAAAATTTTTTTCTAAGAGTCTAA-------------------ATTTTTTGAAAATCTTGACAAATTACCA-------TAACTGAAAATTTTCAAAAACTTTGTTTTCAAACTTTTTC-----AATGTTCATTATATATTTTTGAATTGTTATGAATGGAATGTTC--ATGATGACT-------------CATGTAATTCATGGCTTC--CATCTACAGCAACATTTTTTAATGAA--CTATTACTTTTTCAGCAACAAAACATTATTGTTACGCTATGTTAAAGCAG----TTTTACATGTTCAATCTAACATTTTTATAGTATTTTTCGGTTTGGCAAAATAAAAATG------CATTTATTCTGATGTTGTAATTTCCAAT------AATTTGAC------------------AAACACTACTACGTTC
s caeRem4.Crem_Contig15    43295 423 -  1794024 ATTCGTATAGTAGAACG------ctcactttgaaaattgagc----agagtttgtttttctttgccTCATCGTTTTTCACTGCGTATTCAGACAAAATATTg-ggagaataaaaagaagtttcaatgaact---ttttaaaactaattatcaaaattgttca---aattttctttatttacGAAGAAAACGACTTTCAGTAGAAAACCATAACTAAACATTCAagttattca--aattgaaaataattaatataaatttgaaatgaaattcaatatttctt-gGC------------TTGTAATGGTaagtagaaaaaaatgagtttatattttcaatcCATCATAACTGAAATATAAATGGCTTTTTCCAAA-GCGAATT------CATTTCTACAtgtg-aataattttgaagcgACCATAGTGAACATGTAAATTATAAGATACAACGCCTACCAAGTTT
i caeRem4.Crem_Contig15 I 76 I 184
s caeSp111.Scaffold582    442493 233 -   484378 -----------------------TGTGCTCTAAA------------CGAGTTGGT-----------------TCATTCAGTATGTTCCTTGAAGAAATAAAGCAGATAATA--------------------------TAAAATTAATCG--------Gttca--------------------------------ttc--tggaaaa---------------taagtTATTCT--GTTTG--AATGAGGACTAAGAATTC--AATGCAA-CCAATCCttct---gt------------ttgaaaaaaaaaacaaaaacaa-------------------caaggGTGACAggatcattttttgattgttctGA----GAATTAGCAGccattttt----------tagtttcaaag------TAGTCGAC----------------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I

a score=-2360.000000
s ce10.chrX              2440833 167 + 17718866 ACTTAAATGCGTTATGCACTTAGTTTTACTAATAAGGCTGATTATCTGTTTTCCAGCCAGTGATTTTTATTAGTTTGCTTCAGCTTTTTAAAAAAAGTTCTGAAAGTTTTTTCAGGTTCAGGTGATTTTTGAATATAGCTTTCTTTGGGGATCTCAACAGATTCAGA
s caeSp111.Scaffold582    442726  66 -   484378 -----------------------------------------------------------GTAATTTCTTGTCATTGGGTCCATCTC----------------------------GTCTCA-------TTTCATTGCGGCTTTC-------ATCTGAACCGTTGGTGA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I
e caeRem4.Crem_Contig15    43718 184 -  1794024 I

a score=-10392.000000
s ce10.chrX              2441000 243 + 17718866 -------AAAATTCAAAAGCAAT--CTGAAAAAATATGAAAAACTATGTATAATATTTTCTCTCAAGTTTATTG----TGTCAGTATTGATTGCCAAAAGATCTTACATTT-TTGTAACC----------CTCCAGAATGTCCTTTTTCAGGTGATTTCCA--GAATTTT---TT---GT-AAATTTTCATCATGGAA----AAAGTTAACATGAGCC-TGCTCATTAT-AGTCTAGTTTCAGGTCA-TTGCTCAAAAAGAAATGCGTCAACTCGTGTCAATC
s caeRem4.Crem_Contig15    43902 239 -  1794024 -------aaaacttgaaattaaattctgag-------tagaaatgtttt--------ttctttaaaaaatttcagaattaaatgttttg-------aaatctaATTCTCTTGATGTAGTATAATTAGGAAATTAGTATTATTTCAAACCcgtgttttt-----aaattttcaatt---gtaaaattatttttttaaac----acatttttagTGAGAGATTCAAAGAATAAAGTTAGTTCCAGATCATTTGTTCGCATCGACCTGCGTCA---AGTTTTCATT
i caeRem4.Crem_Contig15 I 184 I 1
s caeSp111.Scaffold582    442792 196 -   484378 AAATAATATAACATAGTATCAAA--CCGAG---------AAAGCGATTTACTATAACTTCTGTTCAGATCTTCA----TACAAGTTCTC-------CAAAAGATTTCTCTC-ATGAAACA-------------------ATTTCCTGTCTggctttttccaaaaaattttagattcaGATCAAATTTTCGTCACAAACTGCGGCAATTTTC-TGCATCATTCAAAGGAT--------------------------------------------GGGTCCCATT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I

a score=0.000000
s ce10.chrX              2441243 1 + 17718866 G
e caePb3.Scfld02_0       3181386 983 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17187580 2024 - 21540570 I
e caeSp111.Scaffold582    442988 0 -   484378 C
e caeRem4.Crem_Contig15    44141 1 -  1794024 I

a score=6855.000000
s ce10.chrX              2441244 18 + 17718866 TCGCATCATTTTCACATC
s cb4.chrX              17189604 18 - 21540570 TCGCATCATTTTCACATC
i cb4.chrX              I 2024 C 0
s caeRem4.Crem_Contig15    44142 17 -  1794024 TTGCATCATTTTC-CATC
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    442988 11 -   484378 ---CATCATTGACG----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3182369 18 -  4147112 TCGCATCATTTTCCCATC
i caePb3.Scfld02_0      I 983 I 27
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=-4409.000000
s ce10.chrX              2441262 17 + 17718866 AGA-TCACACTCATTATA----
s cb4.chrX              17189622 22 - 21540570 ATTCTTCCACTCAGCATCAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    44159 19 -  1794024 GGT-TTCCACTCATCATTG--A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    442999  8 -   484378 ---TTTTTATG-----------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3182387 27 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=102951.000000
s ce10.chrX              2441279 541 + 17718866  
s cb4.chrX              17189644 613 - 21540570  
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig15    44178 634 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    443007 666 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3182414 633 -  4147112  
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=-2452.000000
s ce10.chrX              2441820 68 + 17718866 -----TT--TCAAACT----AAAGCAAAC--------GTGTTACCCAAAAATGTGT------ACTCC---------TTTTGGAATGAATTTTTAACAATGG-A
s caeRem4.Crem_Contig15    44821 96 -  1794024 CAAGCTTAACCAGTCG----AATACACACGCTCTGGGAGAGTAC--AACTACTTGTCATGCAACTTTACCAGCCATTGTCAGAATGAATTTTTAACACAAGC-
i caeRem4.Crem_Contig15 I 9 I 4
s caeSp111.Scaffold582    443673 81 -   484378 ----CTT--TCAATGG----AATGAAGAT--------ATGTCGTTGTACTATTTGTCATGCAACTTTAC--GCAAGCTTCttcctgaatttttgagaatgg--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3183047 77 -  4147112 ----CTT--CTCTTAGGCCAAATAAAGA-----------GCCAC--TACTACTTGTCATACAACTTC-----CCATCTTCGGAATGAATTTTTAACAATGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17190257 53 - 21540570 I

a score=16463.000000
s ce10.chrX              2441888 49 + 17718866 TATCGTATTGAAAGTATA------AGGGTACAAAGAATTT-TTTGCATGTCTAATC
s cb4.chrX              17190310 41 - 21540570 GGTTGTATTG--------------AAAGTACAAAGAATCTATTTGAATGTCTAGG-
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig15    44921 55 -  1794024 GATCATATGGGAAGT-TATGGGAAGAAGTACAAAGAATTTCTTTGCATGTCTAATC
i caeRem4.Crem_Contig15 I 4 I 277
s caeSp111.Scaffold582    443754 40 -   484378 -aTCATATG---------------AGAGTACAAAGAATTTCTTTGCATGTCTAATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3183124 50 -  4147112 -ATCATATGGGGGGT-TACA----AGAGTACAAAGTATTTCTTTGCATGTCTAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I

a score=613.000000
s ce10.chrX              2441937 2 + 17718866 AA
s cb4.chrX              17190351 2 - 21540570 AA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    443794 2 -   484378 GA
i caeSp111.Scaffold582  C 0 I 260
s caePb3.Scfld02_0       3183174 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e caeRem4.Crem_Contig15    44976 277 -  1794024 I

a score=-27.000000
s ce10.chrX              2441939 9 + 17718866 CGATATAAA-
s cb4.chrX              17190353 9 - 21540570 CAATACAAA-
i cb4.chrX              C 0 I 1725
s caePb3.Scfld02_0       3183176 6 -  4147112 ----AGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e caeSp111.Scaffold582    443796 260 -   484378 I
e caeRem4.Crem_Contig15    44976 277 -  1794024 I

a score=-3952.000000
s ce10.chrX              2441948 463 + 17718866 GAGTCGAAAACTAAAATTGCAATTAGTTTGGTCCTGAAACTCGAATATTATTCATGTGAATATTCAAAAACATATGTTGTTATTTCATA-TTAGATGTTAGataattataaataaaaaatatataatCATGAATTCATGTAGTAGAATAGATCTACTGCTATATACTGTTTTCCGGTAAAGGCCTGCTATGTGGTTTGCGCAATAAGAACATTATATTAGATAAAAAATAGTTCAGCGAAACTAATTGAGTGTAGATGTAACTTTTTTG----TTCA-ATATGTACCGAAAGTATGTGGTTTTCTTTTTTAAATCTGATAAAACTATGGAATTCACGTCAAAATTTCAATACAACGTTTTCAAGGTGTCTCTGTGGCTTTGGAAAATAAAACTGCGAATATTCATTGTCAGATTGAGTTTTACAGTTTAGAAATCACAGAACAAATTCTGTTGAACAAATCTACATATT
s caePb3.Scfld02_0       3183182 302 -  4147112 GGGGC-AGTACTA--------------------CTCATACTAG-----TAATGGTACGAATGACTCAGACTATG-GTTGAAGCGTCACAATTTGAGATCAAATGATTG-----AAGAAATAC---------------------------------------TATGGTAAGTTTCCATAGAAGCTTGAT-----------------------TCACatcgttcaaaaaatag------------agttgtata-----ataattttttcgagttttcataaaaattcagaaagagtCCCGTCAATTTCTTATGATTTAA----------------GCTTCATCATCCTGTTACAA-------AAAGTA-----ATCGTTCAAAGGAATAGAATCGA----AGCCATTGTC------------------------TCACATCACAAAGGCTTATTCACAAAACTTTATGTT
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17190362 1725 - 21540570 I
e caeSp111.Scaffold582    443796 260 -   484378 I
e caeRem4.Crem_Contig15    44976 277 -  1794024 I

a score=0.000000
s ce10.chrX              2442411 197 + 17718866 AAATTTTTGTAATGCAATTGAAACCGGCCAATTGAGAATTAGCTTCGGAATATTTGCCTCCAACTCTAAATGTTTCCAACTAAACCCTGCCTTGCGGCAGTTTTCTTGAAATCAGCTTATATATTTGTTGATAGATATTGCGTCTACCACAAAAAACTTAAAGCAATATTACATCTAAAAATTGTACTTAAAACTCC
e caePb3.Scfld02_0       3183484 148 -  4147112 I
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17190362 1725 - 21540570 I
e caeSp111.Scaffold582    443796 260 -   484378 I
e caeRem4.Crem_Contig15    44976 277 -  1794024 I

a score=-38.000000
s ce10.chrX              2442608 147 + 17718866 ATTTTATAGTAACATAC----AAGtaattttattataaaaatataattGGATTAAATGAAGAAATGCTTTTG----TTAACTGGTGCTCAAGTTAAACAATTAAATAGCTGTTAGCAAACATTTCCAAATTTCTCTATTAGAACAATTCTAAA------AT
s caePb3.Scfld02_0       3183632 139 -  4147112 ATTTCGTAAGAACACATTTTAGTCtaacttttttgtcaaactGCAA--GGCTCCAA--AAGA-----TTTTGCTGATTATCTGATGATTACTGTAAAC-------------TTTGAAGTCATTActtctcttctcaatttcaccGGGTCCAAGCGCTGTAT
i caePb3.Scfld02_0      I 148 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17190362 1725 - 21540570 I
e caeSp111.Scaffold582    443796 260 -   484378 I
e caeRem4.Crem_Contig15    44976 277 -  1794024 I

a score=-731.000000
s ce10.chrX              2442755 33 + 17718866 ---------ATTTGAAAGGACATCTTGAATACTACAAAGTGA
s caeRem4.Crem_Contig15    45253 30 -  1794024 ---------attcgAAACAAATCTTTGTAT-CTACAAcgg--
i caeRem4.Crem_Contig15 I 277 C 0
s caePb3.Scfld02_0       3183771 41 -  4147112 TTTTGGGCAATgtcgaattcatttttcaat-ctaaaaatgta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   176634 4087 +   720316 I
e cb4.chrX              17190362 1725 - 21540570 I
e caeSp111.Scaffold582    443796 260 -   484378 I

a score=5049.000000
s ce10.chrX              2442788 7 + 17718866 TTTATTA
s cb4.chrX              17192087 7 - 21540570 tttattg
i cb4.chrX              I 1725 C 0
s caeRem4.Crem_Contig15    45283 7 -  1794024 tttattc
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3183812 7 -  4147112 tttattg
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   180721 7 +   720316 TTTATTA
i caeJap4.Scaffold18213 I 4087 C 0
e caeSp111.Scaffold582    443796 260 -   484378 I

a score=425850.000000
s ce10.chrX              2442795 782 + 17718866  
s cb4.chrX              17192094 749 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    45290 760 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444056 765 -   484378  
i caeSp111.Scaffold582  I 260 C 0
s caePb3.Scfld02_0       3183820 769 -  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   180728 798 +   720316  
i caeJap4.Scaffold18213 C 0 I 430

a score=5395.000000
s ce10.chrX              2443577 26 + 17718866 AAAAAAGCTTGGG------GGAGAATGGAAAA
s cb4.chrX              17192843 29 - 21540570 GA---AGCATGtgaggaaaaaataatgtACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    46050 25 -  1794024 GA-GCAGCATGTG------AAAGGATGAACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444821 26 -   484378 AA-CAAGCAtgtg-----aaaagaatgaagga
i caeSp111.Scaffold582  C 0 I 578
s caePb3.Scfld02_0       3184589 27 -  4147112 GA-GCGGCATgtg----aaaaagaatgaacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   181526 430 +   720316 I

a score=7358.000000
s ce10.chrX              2443603 24 + 17718866 GTGTGACCGGAGATCTCAGAACTG
s cb4.chrX              17192872 24 - 21540570 GTATAGATGAAGTTCTTAGAATTG
i cb4.chrX              C 0 I 1156
s caeRem4.Crem_Contig15    46075 24 -  1794024 AAATGACTAAAGTTCTTGGAATTG
i caeRem4.Crem_Contig15 C 0 I 722
s caePb3.Scfld02_0       3184616 24 -  4147112 GTATGACTGAAGTTCTTAGAAATG
i caePb3.Scfld02_0      C 0 I 1365
e caeJap4.Scaffold18213   181526 430 +   720316 I
e caeSp111.Scaffold582    444847 578 -   484378 I

a score=0.000000
s ce10.chrX              2443627 1584 + 17718866  
e caePb3.Scfld02_0       3184640 1365 -  4147112 I
e caeJap4.Scaffold18213   181526  430 +   720316 I
e cb4.chrX              17192896 1156 - 21540570 I
e caeSp111.Scaffold582    444847  578 -   484378 I
e caeRem4.Crem_Contig15    46099  722 -  1794024 I

a score=499.000000
s ce10.chrX              2445211 104 + 17718866 TATCATGCCCGTTAGACAGCCCGTTGCATTTTGCAAAAAATGATGCTCTTTCAAAACATGTTAAGAAATCATTCTAAAATTGAAATAGTAAAAACACCGGATTG
s cb4.chrX              17194052  80 - 21540570 TATCATGCCCGTTTCATACTCGTTagaatttt----------------tgtctgaaaattttaaaaatccattGAAAAA----ACTCGCAAAA----CTTTTCA
i cb4.chrX              I 1156 C 0
e caePb3.Scfld02_0       3184640 1365 -  4147112 I
e caeJap4.Scaffold18213   181526 430 +   720316 I
e caeSp111.Scaffold582    444847 578 -   484378 I
e caeRem4.Crem_Contig15    46099 722 -  1794024 I

a score=-882.000000
s ce10.chrX              2445315 10 + 17718866 TTTTTCCTGT----
s cb4.chrX              17194132 10 - 21540570 ----TTTCCCAGAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3186005 10 -  4147112 TTTATTTTGC----
i caePb3.Scfld02_0      I 1365 C 0
e caeJap4.Scaffold18213   181526 430 +   720316 I
e caeSp111.Scaffold582    444847 578 -   484378 I
e caeRem4.Crem_Contig15    46099 722 -  1794024 I

a score=273.000000
s ce10.chrX              2445325 1 + 17718866 A
s caeRem4.Crem_Contig15    46821 1 -  1794024 A
i caeRem4.Crem_Contig15 I 722 C 0
s caePb3.Scfld02_0       3186015 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   181526 430 +   720316 I
e cb4.chrX              17194142 0 - 21540570 C
e caeSp111.Scaffold582    444847 578 -   484378 I

a score=-1072.000000
s ce10.chrX              2445326 61 + 17718866 AAGCA---------AAGCATTCTTGCTCATTCACCACAATGCCACATT--ATTGT-GCTTCTTCGTTTC------ACAG
s cb4.chrX              17194142 74 - 21540570 --GCAGTAGCCTTCACACATTCTTGCTCATCCTCCATAATGCACCAAT---TCCTGTCCCATATTCTTTCCATCCCCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    46822 61 -  1794024 AAGCA---------AAGCATTCTTGCTTATTCACCACGAAACACCATT---TTCCCTCCctcactattt------tttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    445425 54 -   484378 AAGCA---------AAGCTGCTCA-----TTCGCCATGATTCACCAATAAATACT-CCCCATGTG----------TTTT
i caeSp111.Scaffold582  I 578 C 0
s caePb3.Scfld02_0       3186016 56 -  4147112 ATACA---------AAGAATTTTAGCTT-TCCATCTAAATGCACCATC---TTGT-TCCCATATGT---------TTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   181526 430 +   720316 I

a score=1340.000000
s ce10.chrX              2445387 325 + 17718866 TCTGCACAACAAAAACCCAATCATTCACG-----TG---TT--TCTGAACCTTGTTTTGTTTTTGGGAACCAAGCAGCTT----CACACCACATTT-AAGGAAAAGATTCATG--TACACCA--AGAGACGTGGAAAAAAAAGAAGA----AGAAGTAAGAAACACAAAGGAGTACTGG------------------------AAAGCAAATGAACGGTGGGTGTTGTGTGGGAAAA-----AGACAAGGATA---------------------------AATAGACATGAAAA------AAAAG---------ATGCG--GAAAAAC--------GTTTTTTTTTTTTTGAAAATCAATCCGGATGCAAACA---------------------------------CAAAAATTGGTGGAGATGCGTTTAAATTCAACATGAAAGAAAAATGTTGATTAAAA----------------------
s cb4.chrX              17194216 289 - 21540570 CTTGCAAAACAAAG--CAAACCATACACACACGGTG---TTGATGTGAGCCATAT-GAGCA-----GCACTAAGCACCCTTCAACACACCACATTT-AAATTTTAGATTCATGATTTAGCAAACAGAGACGATCAGAAGAA---------------------ACACAAAGAAGTATAGAGAGGGAA------------AAAACATAGTAA--GGAAAATTGGTGACTGGTGGGAGAA------GACA--GAGg---------------------------acaagaagagaaaa------aaagaagacggtTGGTGCA-----------------AATTA---------ATGAA--AACTTGGGTGCAA--------------------------------------AAAAGGATG---CTTGAGgttatag----------------attttcagaaaaa----------------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    46883 266 -  1794024 cttgcaCAACAAAA--CAAACCATACACA-----TG---TT--TGTGAGCCATCT-CTGCC-----GAACTAAGCACCTTCCAACACACCACATTT-AAGAAAAAGATTCATG--TTCACCAAAAGAGACGATCaaaaaaa--------------------CACAGAGAGAAGTATCG---------------------GAACATAACA------------GTGGTTggtgagaaaa-------------------------------------------ataattaaagaCAA------AGA-----------GTGCA-----------------AATTGAATTGAGTTATAAA--GGTTTGGATGCAAACA---------------------------------CCAAAAAGACT---GACAGAGTAATAgtcgaa-------aaatatttaaattaaAG----------------------
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    445479 239 -   484378 TCCGCACAACAAAA--CACACCATACACG-----TG---TT--TTCAAGCAATCTGCTTCT-----GAGC-AAGCACCTCCCAACACACTACATTC-AAG-AAAAGATTCATG--TACACCA--AGAGgcaatcagaaaa----------------------acacagAGAAGTATTGG------------------------AAATCG------------GTGGTTTGTGTaaag--------------------------------------------aaaagacaagaaaataGACGAGAAAT--------GTGCActgaaaat---------cattatttcaaagaaaaaa------cggatgcaaaga---------------------------------ctgaaaa----------------aaag-------------------------agaa----------------------
i caeSp111.Scaffold582  C 0 I 12
s caePb3.Scfld02_0       3186072 290 -  4147112 TCTGCACAACAAAA--CAACCCATACACG-----TG---TT--TGCGAGCCATCTTCTGCC-----GAACAAAGCGCCTTTCATCCCACCACATTC-AGGAAAAAGATTCATG--TACACCA--AAAGACAATCAAAGAA----------------------ACACAGAGaagaatcgg--------------------aagaaaaacA------------GTGGCTGTTGTGAA---------------------------------------------ACAAGACACTAAAA------ATGTAG--------GTGCACAGGAAGTG--------AATCAGTATATATTATAAG------CGGATGCAAAAA-------AGGCCAACACAACTGTTGGATGCTTTATGAAAGTAC---------AATTAAAGCTGAC-------GCATATTGTCACTAGAA----------------------
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold18213   181956 410 +   720316 TTTccacaacaaaa--caaaccatACACG-----TGTGTTT--TGTGAGC-ACATCCTCCA-----GAACTAAGCACCCTCTAGCACAACACATTTCAAGATAAGGATTCATG--TACACCA--AGAAACAatcagagagagagagagagtgagagaaagagaaaaagagaaggagagagggagagagaataTGCGCCAAACTGGAACA------------GCtctccagaaaaaaaaacacaaaaaagggGGAATGGGGTATCTTTTTTGTAAGCTGTCAGAGAATGAGAAAT------AAGAAA--------GTGCATATCAAAGCTattgtaaaatttgttttcagagAGACACGGACAGGGTGCAGACACCAATGAAGGCG---------------------Caaaaaatggt--------agcaaaaggaaaaagaaaaaaaatatcaggaataaagcaacacaaaaaaagagtaaaaa
i caeJap4.Scaffold18213 I 430 C 0

a score=-5300.000000
s ce10.chrX              2445712 37 + 17718866 -TTATGGAAACTTACAATTAAAGCT----------------------------------------------GAAAATTATTATT----
s cb4.chrX              17194506 40 - 21540570 -ttgtgtaCAATTACAATTAAAGCTT-------------------------------------------AAGCGAATTGTCACT----
i cb4.chrX              I 1 I 15
s caeRem4.Crem_Contig15    47150 34 -  1794024 -TAAAGCAAATTGACACTAAAATATT---------------------------------------------TCCTGTTGT--------
i caeRem4.Crem_Contig15 I 1 I 4
s caeSp111.Scaffold582    445730 40 -   484378 -TTATTAAAGATTACAATTAAAGCTG-------------------------------------------CTGTAAATTGTCACT----
i caeSp111.Scaffold582  I 12 I 16
s caeJap4.Scaffold18213   182366 88 +   720316 atttaaaaacacaaaaattaaagcttaatatagtgaaaaagaaccgagaaaagggggatagaaaattaaaaaaaaattattaagcTTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3186362 42 -  4147112 I

a score=20759.000000
s ce10.chrX              2445749 248 + 17718866 ----GAAAAATGTGA-----------AAAAATGTGTGATG---GGATAAAGGTGTAAAA------------GA------AATAA------------AAACTTCTCATATTC--AAACAA-----------------------AAAATTACGCCGTATTGTTGATAAAACTCCGGA-GACTAGCATAAAACGGG---GGGAA-----------------GAATAGGAGTTATCGCGTTGCTGTGAAATGTGATACAA--TCGAAAATACA--TATGTATCGAATCATAAAG--------GGGTACAACTACAACTACATTGAGAA-------AAGTTTTTTCAGAGAGGA-T---------------------TTACA--------ACAAAG
s cb4.chrX              17194561 298 - 21540570 ----TATATGTGCAGCAA------AGAAAGAAGTG-AGAG------AAAGAGTGGGAAATTATTATTATGaga------aatga-----atttcaaaaa------------aaaattga---------a--aaaaaaatgaaaaaaatacgcCGTATTATTCAGAAAACTCCGGAGGACTAGCAGAAACGGGagacaaaaatttaaatggaaagaaagaaaaatgagttaTCG-----CTGTGAAATGTGACACAA--TTGATA----A--TATGCAACGAATCAATGTA--------TAGAAAGAAGATTTAGGAGTTATAGATGTAGGTAGCGAAAAATACAgagcagc---------------------tgaaaaaaaagtgaaagtg
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15    47188 289 -  1794024 ----GAAATGTGCAG------------AAACAGTgcatga------aaaaagtgaggaacTAGTTTTGAGAGATAGGGTAATAAGAGATATTTCataagttcttttttttcaaaattaattattcGAGA--AGTTGTATGGAAAAAGTACGCCGTATTATTGATAAAACTCCGGA-GACTAGCAGAAACAGGG---AAAAATT------------------AAGGAGTTGTCGCATTACTGTGAAATGTGATACAA--TTGAAA----A--TATGCATCGGATcataaaa--------aagacaaaaca-----aacttacaaa------aaaggaaaataaaaaagcaat---------------------TCACA--------GCAGTG
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    445786 273 -   484378 ----gaaaagtgcag-----------aaagtggtgcaaaagtgagaagtaaataaaaaagtgcgaaatagtaa------aataataaatcggttttaattattattttttc--aattaa--------------------aaaagaattacgCCGTATTATTGATAAAACTCCAGA-GACTAGCAGAAATCGGG---AAATG-----------------AAAGGGGAGTTATCGTATTGTTGTGAAATGTGATACAA-TCTGAGA----A--TATGTATCGgatcatttaa--------aaaaatggaga---acaaattatgaa-------aatcatGACAAGAGATGAAT---------------------TCACA--------GTGAGG
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3186404 238 -  4147112 ----gaagaataaaa-----------aaaactgtgcaaag---------aaaatgaaaattgtattctgg-aa------aataaaa----------aattatgtttctttC--ATT-------------------------AATAATTACGCCGTATCAAAGATAAAACTCCGGA-GACTAGCAGAAATCGGG---AAAAG------------------GAGAGGAGTTATCGCATTGTTGTGAAATGTgatacaatttttaaa----a--tatgtatcggat---------------aaaaatgaaat---cgaagatttgaa-------a---atgacagGAGATGAAT---------------------TCACA--------GATGGG
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18213   182454 311 +   720316 GAAAGAAAAGTGAAAGTGTTGACTACAAATTGGTGCTATA---GAGAAAGCATTGCAAAGCATTACAAGACAG------GACAGGA----------AAG--------tttcaaagttaaaaaaaaaagatttaaaaaaaaacataattacgCCGTATTGTTGATAAAACTCCGGA-GACTAGCACGATCGGGG----------------------------CCGGAGTTATCGCATTGCTGTGAAATGTGACACAA--TAGAAA----GATTATGCGGTAGAAAATAGAAGTGTCGTCAATAATGGGTG-----GGACTGGgaa-----gaatgaagaaaaaaaaatcagttactTGTTTGATCACTACGAATTACA--------ACTGGG
i caeJap4.Scaffold18213 C 0 I 38

a score=-2829.000000
s ce10.chrX              2445997 39 + 17718866 AAAGTTGTTTCTG---AGT------CAAAAAAAAGTGAGGTCAG-----------GAA---T
s cb4.chrX              17194859 41 - 21540570 ac---------tGCGTAGG------TGGCTAA---TGAGGtcaagagaaagagagaaa---t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    47477 37 -  1794024 AC---------TG---AGT------CAGAAAA---TGAGGTCCA-AAAGTAAgagaaa---t
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    446059 35 -   484378 ACA--------TG---AGT------CAAAATA---TGAGGTCAA-------AGAAGACATTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3186642 38 -  4147112 ACA--------TG---AGTGTGATGAAAATca---tgagattga-------aaaaaaa---t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   182765 38 +   720316 I

a score=1102422.000000
s ce10.chrX              2446036 1645 + 17718866  
s cb4.chrX              17194900 1638 - 21540570  
i cb4.chrX              C 0 I 376
s caeRem4.Crem_Contig15    47514 1618 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    446094 1631 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3186680 1653 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   182803 1716 +   720316  
i caeJap4.Scaffold18213 I 38 C 0

a score=-4804.000000
s ce10.chrX              2447681 58 + 17718866 GTG---TTTAGATTAATTAGTTTAAAAATGT-TTTTGTGATGACGTGTAAA-----------------------AAAAATGAAAA
s caeRem4.Crem_Contig15    49132 68 -  1794024 GTG---TCT------AAGGAGTTAAAATAG----TTg----gacacaaaaaaaaagaatattctgACAAAGTGAAGGAATGAAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    447725 53 -   484378 gtactttcagaa--aaataagttaaaaaaga-gattg----gacacgaatg-------------------------aaatgaaaa
i caeSp111.Scaffold582  C 0 I 216
s caePb3.Scfld02_0       3188333 49 -  4147112 GTA---TCTAGA--AAAGAAGTTAAAATAG----TTG----GAcacgaaaa-----------------------ataaatgaaat
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   184519 46 +   720316 --G---TTCAATTCAAAATGTTTAGAAATTTCAATtc----ggcacaaaaa-------------------------aaat-----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17196538 376 - 21540570 I

a score=-1643.000000
s ce10.chrX              2447739 13 + 17718866 TCCGAAAATAGAA
s caeRem4.Crem_Contig15    49200 10 -  1794024 -TCCCAAATAA--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3188383 12 -  4147112 tCGACAAGTGaa-
i caePb3.Scfld02_0      I 1 I 158
s caeJap4.Scaffold18213   184565 10 +   720316 ---gtaaagaaaa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I

a score=1111.000000
s ce10.chrX              2447752 35 + 17718866 AGCAGCTAGGGG---------AAAGTTGAACACGTATAATTTTT
s caeRem4.Crem_Contig15    49210 44 -  1794024 AGCGATTAGGGGTATAGAGAAAAAGTAGCACGTGTACACCGTTT
i caeRem4.Crem_Contig15 C 0 I 90
s caeJap4.Scaffold18213   184575 35 +   720316 agcagttaggggtgtaaagaagaagaataagagga---------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3188395 158 -  4147112 I
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I

a score=750.000000
s ce10.chrX              2447787 105 + 17718866 CGAAGTGAAACTAT-TTAAAGGAggacgatt----------ttgaacgtt--cagacccaaaatgggctgaaataaatg--aattttgtaatgaaacttttcaaaaacttttcaaaaatt
s caeJap4.Scaffold18213   184610 110 +   720316 ggaagaagaagaataataacggaagaCAATTTCTGTTGGCGTTGGATATTACCATACTTGACCTTGGATGAAAAACATgtcagtttt----------ttttggaaaaatgtgtaaaaact
i caeJap4.Scaffold18213 C 0 I 347
e caePb3.Scfld02_0       3188395 158 -  4147112 I
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I
e caeRem4.Crem_Contig15    49254  90 -  1794024 I

a score=0.000000
s ce10.chrX              2447892 530 + 17718866  
e caePb3.Scfld02_0       3188395 158 -  4147112 I
e caeJap4.Scaffold18213   184720 347 +   720316 I
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I
e caeRem4.Crem_Contig15    49254  90 -  1794024 I

a score=339.000000
s ce10.chrX              2448422 10 + 17718866 AAACCGAAAC
s caeRem4.Crem_Contig15    49344 10 -  1794024 AAACtataat
i caeRem4.Crem_Contig15 I 90 C 0
e caePb3.Scfld02_0       3188395 158 -  4147112 I
e caeJap4.Scaffold18213   184720 347 +   720316 I
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I

a score=-1858.000000
s ce10.chrX              2448432 4 + 17718866 ACGA-----
s caeRem4.Crem_Contig15    49354 4 -  1794024 --gaaa---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3188553 4 -  4147112 -----acta
i caePb3.Scfld02_0      I 158 C 0
e caeJap4.Scaffold18213   184720 347 +   720316 I
e cb4.chrX              17196538 376 - 21540570 I
e caeSp111.Scaffold582    447778 216 -   484378 I

a score=2139.000000
s ce10.chrX              2448436 47 + 17718866 AAAAAAAAAAC-TAATTACCACTCTCTGAAACGCGTT-AGAGAGT-------AACG---
s caeRem4.Crem_Contig15    49358 48 -  1794024 cagaaaaaaac-tggttGCCAGTCGCGAAACATT----CGCGAGTT------GATATCG
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    447994 55 -   484378 aaaacgaaaaa-tggtTGCCACTCTCTGGAAGGCGTCGtgagagtttgaaaaaacg---
i caeSp111.Scaffold582  I 216 C 0
s caePb3.Scfld02_0       3188557 45 -  4147112 -aaacaaaaacttggtTGCCACCCTCGTTATATC----TGAGAGCC------AAAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   184720 347 +   720316 I
e cb4.chrX              17196538 376 - 21540570 I

a score=31223.000000
s ce10.chrX              2448483 81 + 17718866 AGGGGTTAG-GTAAACTGATAGATAG--AGAAAAATGGCTACTTTTT---------CAAACCTTTCTATTCACAT-------ATATAATCATCAT-ACAAT
s cb4.chrX              17196914 96 - 21540570 AAGGGttagtgtcaactgatagatagaaaaaatttcgactacttttctctcgaaaaaaaacaatgatatgcacataataataata-----ataatgataat
i cb4.chrX              I 376 C 0
s caeRem4.Crem_Contig15    49408 75 -  1794024 AAGGGTTAG-AAAAACTGATAGATAGAAAGGAAAATGGCTACAGTTT------------GAAATGATATGCACAT-------ATA-----ATCAC-ACACT
i caeRem4.Crem_Contig15 I 2 I 25
s caeSp111.Scaffold582    448049 78 -   484378 gGGGGTTAGAGTAAACTGAtagatagaaagaaaaatggctacttt-t---------gaaataatgaTATGCACAT-------ATA-----ATCAT-ACACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3188602 80 -  4147112 GGGGGTTAGAATAAACTGAtagatagaaagaaaaatggctACTTTCC---------AAAATAATGGTATGCACAT-------ATA-----ATCATAACACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   184720 347 +   720316 I

a score=-3096.000000
s ce10.chrX              2448564 21 + 17718866 ACCAAAAAAATAA-----AGTCTCAT--
s cb4.chrX              17197010 22 - 21540570 -----aataataatcat-ACACTTTTCC
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582    448127 17 -   484378 -------TCATAACC---ATATTCGTC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3188682 20 -  4147112 -------TCATAACCATAATAATTGTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   184720 347 +   720316 I
e caeRem4.Crem_Contig15    49483 25 -  1794024 I

a score=14356.000000
s ce10.chrX              2448585 73 + 17718866 AACCAAAAGCGACAT---GTTTCTAGCCGGACAATCAAGAGATTTGAGAGGGTT-----ATTCC--GGTGCCT----TGGTCCC--AG--C
s cb4.chrX              17197033 64 - 21540570 ACCAAAAAGCGACAT---GTTTCCAAC------A--------------GGGGTT--ATTATTCCATAGTGCCTTTGATGATCCC--AGATC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15    49508 71 -  1794024 agtcaaaaGCGACATTGGTTCTCGGAC------ACGAAAAGT----TGGGGGTTGGGTTATTCC--GGTGCTT----TGATCCC--AG--C
i caeRem4.Crem_Contig15 I 25 C 0
s caeSp111.Scaffold582    448144 63 -   484378 AACCAAAAGCGACAT---GTTCCTTCG------ACCAATAGA----AAAGGGTT-----ATTCC--GGTGCCT----TGGTCCC--AG--C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3188702 61 -  4147112 AACCGAAAGCGACAT---GTTTCT----------CCAATCAA----AATGGGTT-----ATTCC--GGTGCCT----TGGTCCCGTAG--C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   184720 347 +   720316 I

a score=165350.000000
s ce10.chrX              2448658 191 + 17718866 TACGAATTCATTCATATAGCTCACACGAAATGTGAACGAGTGAGGGGT----GAGAGCATGACAGAAAAT----TGAAGTTAAGAG--------------GTTTAATTGGAACGTACCTTGACTTTACCGTCCGTCGAGTTCTCCATATGATTAATCAA---TGATGGAGCGCTGGTAGCAAGCATTATATTGTTTTGTGTTTGATGAGCTGAAAA
s cb4.chrX              17197097 211 - 21540570 TACGTATTCATTCATATAACACACACGAAATGTGAACGAGTGAGGGGTGAGAGAGAGCATgacagaaaatgtttttggggtaagagaaaaaaaaataatag-gtAATTTT----TACCTTGACTTTGGCTTCCGTCGGATTCTCCATATGGTTGATTAGCGCCGATGGAGCGCTAGTAGCAAGCATTATGTTGTTTTGTGAttgatgagctgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    49579 187 -  1794024 TACGTATCCATTCATATAACACACACGAAATGTGAACGAGTGAGGGGT----GAGAGCATGACAGTAACT-------TGGTAAGAG--------------G-GTAATTTGAACATACCTTGACTTTCGATTCTGTTGGATTCTCAATGTGATTGATCAG---CGATGGGGCACTAGTTGCCAGCATGATGTTGTTTTGAGATTGGTgtgctgaaaa
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    448207 186 -   484378 TACGTATCCATTCATATAACACACACGAAATGTGAACGAGTGAGGGGT----GAGAGCATGACAGAAATT--------GGTAAGAG--------------G-CTCAGTTAAACATACCTTGACTTTGGCTTCTGTCGGGTTTTCCATGTGATTGATTAA---AGACGGTGCGCTAGTTGCCAACATAATGTTATTTTGCGATTGatgagctgaaaa
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3188763 186 -  4147112 TACGTATCCATTCATATAACACACACGAAATGTGAACGAGTGAGGGGT----GAGAGCATGACAGAAATT--------GGTAAGAG--------------G-GTAATTCAAACATACCTTCACTTTAGTTTCAGTCGAATTCTCCATGTGGTTGATCAG---CGACGGTGCACTGGTTGCCAACATGATATTGTTTTGTGATTGATGTGCTGAAAA
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18213   185067 195 +   720316 tGCATATCCATTCATATAACACACACAAAATGTGAACGAGTGAGGGGT----GAGAgcatgacaaaaaat---ttggcgaaaaaaGAAGG----------A-ACAAGCGAAACATACCTTGACTTTGTTTTCAGCCGAATTCTCAATGTGGTTGATCAA---TGATGGAGCCGATGTCGCGAGCATGATGttgttttggttttggtgGGCTGTAAA
i caeJap4.Scaffold18213 I 347 I 5

a score=-1766.000000
s ce10.chrX              2448849 9 + 17718866 --TTTTTTGAT
s cb4.chrX              17197308 5 - 21540570 -----ttgga-
i cb4.chrX              C 0 I 28
s caeSp111.Scaffold582    448403 6 -   484378 -----TTAGAT
i caeSp111.Scaffold582  I 10 I 9
s caeJap4.Scaffold18213   185267 9 +   720316 tgattttag--
i caeJap4.Scaffold18213 I 5 C 0
e caePb3.Scfld02_0       3188949 20 -  4147112 I
e caeRem4.Crem_Contig15    49766 10 -  1794024 I

a score=83230.000000
s ce10.chrX              2448858 409 + 17718866  
s cb4.chrX              17197341 469 - 21540570  
i cb4.chrX              I 28 I 984
s caeRem4.Crem_Contig15    49776 399 -  1794024  
i caeRem4.Crem_Contig15 I 10 I 2
s caeSp111.Scaffold582    448418 422 -   484378  
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3188969 412 -  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18213   185276 393 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-7213.000000
s ce10.chrX              2449267 41 + 17718866 CACATGTCCCAT-TGATCCGCT-TCT---ATTGTTATTTGCTACCC-
s caeRem4.Crem_Contig15    50177 35 -  1794024 ----GCCCTTTC-CTAT--GGA-TCT---AGTGTTGTATGGCCCAC-
i caeRem4.Crem_Contig15 I 2 I 5
s caeSp111.Scaffold582    448840 33 -   484378 ------CCCTAT-TGAT--GTC-CCT---GTTGTTTCGTGGTATAC-
i caeSp111.Scaffold582  C 0 I 48
s caePb3.Scfld02_0       3189381 27 -  4147112 ---------TGC-TGGC--GTCTTTT---GTTGTTTGGT----TAC-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   185669 44 +   720316 GAAACGTTTTATGTGAT--GTG-TTTTTAGTTGTTGCATGTTGGCTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17197810 984 - 21540570 I

a score=-5802.000000
s ce10.chrX              2449308 34 + 17718866 ATCTTGAA-TATAAA------AGTCCCTTCATCCTATTCTT
s caeRem4.Crem_Contig15    50217 40 -  1794024 ATGTTGTA-TCAAGAGTTTGTAACAGAAACAGAATGTTCTC
i caeRem4.Crem_Contig15 I 5 I 5
s caePb3.Scfld02_0       3189409 35 -  4147112 TTCTTTTATTCgaga------aaaagattcagaagatcccc
i caePb3.Scfld02_0      I 1 I 5
s caeJap4.Scaffold18213   185713 30 +   720316 ATGTTTTT-GTGACC------CTTCGCCTCTAGTGAT----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17197810 984 - 21540570 I
e caeSp111.Scaffold582    448873 48 -   484378 I

a score=1283.000000
s ce10.chrX              2449342 3 + 17718866 AGA
s caeRem4.Crem_Contig15    50262 3 -  1794024 AAA
i caeRem4.Crem_Contig15 I 5 I 19
s caeSp111.Scaffold582    448921 3 -   484378 aaa
i caeSp111.Scaffold582  I 48 C 0
s caePb3.Scfld02_0       3189449 1 -  4147112 --a
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   185743 3 +   720316 AGA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17197810 984 - 21540570 I

a score=1820.000000
s ce10.chrX              2449345 2 + 17718866 AA
s cb4.chrX              17198794 2 - 21540570 AA
i cb4.chrX              I 984 C 0
s caeSp111.Scaffold582    448924 2 -   484378 aa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3189450 2 -  4147112 aa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   185746 2 +   720316 AA
i caeJap4.Scaffold18213 C 0 I 107
e caeRem4.Crem_Contig15    50265 19 -  1794024 I

a score=12057.000000
s ce10.chrX              2449347 76 + 17718866 GTTTTTGGCTAAT-AGTACTGAAGAGAACGGTGGTGACCCACACACACACAAGTTGAACAAACAT-CGCGGCAGGG----GG
s cb4.chrX              17198796 74 - 21540570 A------GTGGATAAATGCTAAAAAGGA--ACGGTAACCCCCGCTCAAACAAGTTGAACAAACAGTTGCGGCAAACGATGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    50284 63 -  1794024 --------ttgat-attACGGAAAATGA--ACGGTGACTCCC---CCAATAAATTGAACAAATAG-CGCGGCGAAT----ga
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582    448926 68 -   484378 agtgatggtTTAT-AATAAGGGAAGGGA--ACGGTGAC--CCCCTCAAA----CAGAACAAATAT-TGCGGCGATA----Gg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3189452 65 -  4147112 a------gttttt-aatACCAAAACGGA--ACGGTAACCACCCCTCAAA---GTTGAACAAACAG-CGCGGCGAAA----gg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   185748 107 +   720316 I

a score=20616.000000
s ce10.chrX              2449423 117 + 17718866 AA---ATAAGTATTTGGAAAAAAAATGGAGTGTTGTAAGAC---GCT---------GATGA-GAGGAGCAAGCAAACGAACAAATAA-------TGCTAACA-----------TTGAGAACAGT-----GAAAAAAGATCGA-A--AGACTGGATGGCA
s cb4.chrX              17198870  98 - 21540570 gt---aaaaa-----ggcaaaaaaatgGAGTGTTGTaagaaaaagat---------gatgatgagaagAAAGCAAAGGAACAAATAAACCG---AGTTAACCT----------TT-----CG--------AGAAA--ATGAG----------------C
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig15    50347 111 -  1794024 gt---aaaag--------aaaaagttggagtGTTGTAGgaa---------------gatgatgagaagaaagcAAACGAGCAAATACACAGTAAAGCTAACct----------ttgagaaca--------aaaaa--ttgagga--aaggTAAGTGGAT
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    448994 112 -   484378 tt---aaaag--------aaagaattggaGTGTTgtaagat---gat---------gatgatgagaagaaagcaaacgagcaaacacaaaaaagagctatccc----------ctaagagca--------aaaaa---tgca-a--agagTAAGTGGAA
i caeSp111.Scaffold582  C 0 I 31
s caePb3.Scfld02_0       3189517 115 -  4147112 ttgaaagaag--------aaaaaattggagtgttgtaa------gat---------gatgatgagaagaaagcAAACGagcaaacacaaaaaagagctaacct----------ttgagaaca--------aaaaaagttgtg-g--aaAGTAAGTGGAT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   185855 139 +   720316 ------AAAA--------GAATATCTAGAGCACTaggaaga---aattttttttagagtgtccAAAGAGGAACGAACGAGCAAGCAAATATAAGAGCTAGAGTTACATAAAGATTTAGAACAGTctgaggaaaaa--ataaa-aataaaattaatgaaa
i caeJap4.Scaffold18213 I 107 C 0

a score=-8625.000000
s ce10.chrX              2449540 24 + 17718866 ACTAT---TCAAATTAACTGGTAGATA------
s cb4.chrX              17198980 25 - 21540570 ACTCT--ACACAATTCTCTAGTTGACC------
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig15    50467 24 -  1794024 ACTCT---CGTTCCTCTCTGTTCAACC------
i caeRem4.Crem_Contig15 I 9 C 0
s caePb3.Scfld02_0       3189637 23 -  4147112 ACCCTGAACTTTTCCCACCGTTC----------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   185994 21 +   720316 ------------TCGAATTGCATGAAGTAGAGT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    449106 31 -   484378 I

a score=81604.000000
s ce10.chrX              2449564 254 + 17718866 GTTCCC------CCCCCCCCCCCC----------------------CCCGAAACGAAGTGAAACGTAACGAA------------------ATCATCGACGAGTAGAGTATATA-GA--ATATGAGACAATTACA-GTGAAGTACAGCGGA-----GGCAGAAAGGGTGCGAACGACGCGGC----ACGA--------GGTGGATTGGGAT--TATGCAGGTCAGGTCCTCAATGAAA--TGACGGTACTTTACTTGCAAAG---ACCATTTCGAATTAGCGGTCGTACTGGTAGTAG----TGGTC--AGAAGATCGTAACCC---TACACTTTTGC
s cb4.chrX              17199005 241 - 21540570 -TATC-----------------TCTA--------TGCAGATTTGATTCGAGAACAAAGTGAAACG---------------------------------CGTGGAGAG----TA-GACTGTATGAGACAATTACAGGTGAAGTACAGCGCG---TGAGGGAAAATGGTGCGAACG-----------ACTAGGAGAGAGGATGGTTTTGGATTATATGCAGGTCAGGTCCTCAATGACATGTGCGGG-----TACTTGCAAAGACCACCATTTCGAATTAGCGGTGT--------GTGGCGGATGGTC--AGAAGATCGTAACC---GCAAACTTTCGC
i cb4.chrX              C 0 I 820
s caeRem4.Crem_Contig15    50491 263 -  1794024 -CTCCG----AACCCGACCTCATCTA--------TGCAAATTCAA-CCGAGAATGAAGTGAAACGAAATGGA---------------------AGGGATGAGTAGAG----TA-GA--GTATGAGACAATTACA-GTGAAGTACAGCGGA---TGAGGGAAAATGGTGAAAACGAGGCGACGCATACAACCGAGGTGGATAGTTTTGGAT--TATGCAGGTCAGGTCCTCAATGACA--CGCGGG-----TACTTGCAAAG---ACCATTTCGAATTAGCGGTA---------GTGG----TGGTC--AGAAGATCGTAACCC-ACTGTACTTTCAC
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    449137 253 -   484378 tcttctt--ccacctGACCTCATCTA--------TTCAAAAT------CGAACCGAAACGAAA--TAGCGAA---------------------TTCGATGAGTAGCG----TA-GA--GTATGAGACAATTACA-GTGAAGTACAGCGCA-AGTGAGGGAAAATGGTGCGAACTAGGCGGCGC--ACGA--GTGGTGGATAGTTTGGGAT--TATGCAGGTCAGGTCCTCAATGACA--TGTCGG-----TACCTGCATAG---ACCATTTCGAATTAGCGGTC---------AAAG----TGGTC--AGAAGATCGTAACCC-----GACTTTCGC
i caeSp111.Scaffold582  I 31 I 6
s caePb3.Scfld02_0       3189660 259 -  4147112 GCTTCT----AACCTGACCTCTTCGA--------TTCAAATTGAA-CACAAAACGAAGTGAAACGTAGTGAA---------------------TTCGATGAGTAGAG----TA-GA--GTATGAGACAATTACA-GTGAAGTACAGCGCAGAGTGAGGGAAAATGGTGCGAACTAGGCGACGC--ACGA-------GGATAGTTTGGGAT--TATGCAGGTCAGGTCCTCAATGACA--TGCGGG-----TACTTGCAAAG---ACCATTTCGAATTAGCGGTC---------GTGG----TGGTC--AGAAGATCGTAACCCTAGGGAACTTTCGC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   186015 226 +   720316 ------ATTTGACCCAACCACATCCAATACTCTGTCCAAATTGCATTTGAGAATTGAGGGTCAGTTAATAATCGATGCCCCACACCCCCTACCATGACCGAGTAGAT----TATGA--GTACGAGACAATTATT-GT---GTGAAGTGAA---TGAAGT--------------------------ACGA-------GGATGGTTTGGGAT--TATGCAGGTCAT--------TGCTA------GG-----TAC---CGTTG---GCCTCTTC-----------------------------TGGCCCTACATGCTAGTAATTG---TCTACTCTACC
i caeJap4.Scaffold18213 C 0 C 0

a score=-35831.000000
s ce10.chrX              2449818 209 + 17718866 CTATTTTTGGGGGGGGGGGGGAGCAAGATGATTAGCACAATTACTCAACTC--ATAAT-----------CTTACTAGGGAATGTG-TAACCTATTGAGTGGTGTTATAGAATGAATGTAGTGTCATTGGATAGCTGATTTTATGTTCTTCTCGAATATAAGAAAATTATTT------TCCGGCGGATATCTAGAACTTCTATTTGCGTCCAAAGTTTAGAGCCGATTTC
s caeRem4.Crem_Contig15    50760 139 -  1794024 tcatttttaagaG-------------------TGTTATA--------------ctaat---------------ttctgaatt----caac-----------aGGTAAGgggt-----------------aaattt----tgaaatattcctGACTCATTCAATAATTCTTT------gccagaaaaatttcaaaacatgtaatattttgaaattttgccaGCAAGAGTC
i caeRem4.Crem_Contig15 I 6 I 63
s caeSp111.Scaffold582    449396 152 -   484378 TCAGTTTGAGAAA---------------TAATTGGTATA--------------AAagt-tgaaaacgaaattgtTATGAAATGGG-CAAT-----------TGTTATGAAATATGTG----------GAATATCTG-TGTgacgtttttcgaattttttaaatagttcttt------gcaaaaatgaattatgaa----------aGTGAAGAATTGTCTG--------
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3189925 162 -  4147112 TCAGTTTGAACAA---------------TAATTAGTAGAACCA---AAGTCAGAAAGTGTGGAGAGGAAGTTGTTATGAAATTCC-GAAT-----------TGTTatgaaat---------------------------tgttgttttttcatattttgagaaaattattttctttagaCAATACTagtcgaaaa----------ttggaaaaattgtctGTCGAATTC
i caePb3.Scfld02_0      I 6 I 4
s caeJap4.Scaffold18213   186241  79 +   720316 ----------------------------------------CTACCAA------CAAGT---------------Ctatgaaatttcaaaac-----------cagTTTTGGTT-----------------ATATACGGTGCGA-------------------------CTTT------GCACGGCTGcatctagaa--------------aaaa----------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17199246 820 - 21540570 I

a score=-23966.000000
s ce10.chrX              2450027  88 + 17718866 AGTTGATTTTC-----TAGAGTATTTC----------------------------------AAAATTAT---------TGCGGGAAATCATAGT-------ATTA----------AACTGGCT-----------------CAATAATTTTTCATAAGC-----TTGCT-----------AAATTG-----------G
s caeSp111.Scaffold582    449548 108 -   484378 AAAtgagtttc-----aagaaaatttct---------------------------------GAAGTCAA---------TGTGAAAA--CGTAACTGATATAATATAAGG------AACTGGCG-----------ACATCATCGCAATGTTACATATTTC----TCGTt--------cataaaatg-----------a
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3190091 197 -  4147112 AGATTATTTTCTTgatcaaagaattttttccagatatctgGACCGATAAGTAGTATTATGAGCATTCAAAGCCTACTTTTTGAAGATCCATATTTGACCGAATCAAAGGTCTTTCAGCTAATAGAAGGTCAAGTACATTTCCttgattctttttgttttttcattgttcgaAGACACATAGAATAGATCATTCATCA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   186320  58 +   720316 -------------------aagattat----------------------------------gaAATTAT---------GATGAAAC--TCTGGCTGAAAGTAT-----GCCTGcaagcaagaa-----------aaac-----------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17199246 820 - 21540570 I
e caeRem4.Crem_Contig15    50899  63 -  1794024 I

a score=-4299.000000
s ce10.chrX              2450115 84 + 17718866 GAAAAGTCATTAGTATCTTTAGCAAAAACTAGCATTTCGGAA--ATATCATTTGCCTTTATATCCGGAGTATACACTTCCGGAGCA
s caeRem4.Crem_Contig15    50962 68 -  1794024 GGaaagtcatcaaa------------aaat--cac-tcaaaataaTATCAATTGCATAAATATCCGCTA---ACATTTCCGGAGTA
i caeRem4.Crem_Contig15 I 63 I 16
s caeSp111.Scaffold582    449656 72 -   484378 gaaaaataactgaaCACAT-------AGCT--CGTACCGGAA--ATATCATTTGCCTAAATTTCCGGCA---TTACTTCCGTAGCT
i caeSp111.Scaffold582  C 0 I 87
s caePb3.Scfld02_0       3190288 57 -  4147112 GTAAAA-ACTTGAGCATTT------GAACT--CATATCAAAACCAAACCATCTAACCA--------------------CCTTAACA
i caePb3.Scfld02_0      C 0 I 46
s caeJap4.Scaffold18213   186378 77 +   720316 --aaatctaTTTCCATCTTATGCGGCACAT--GAAATCGGAA--ATATCAATGCCTTGAATTTCCGACT---GAATTTCCGAAGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17199246 820 - 21540570 I

a score=-3479.000000
s ce10.chrX              2450199 55 + 17718866 CAAAAAAA--AATGCGAGAATGATACTTATTACATTACCAGGGTA----------TCCAAGAG-TGAT
s caeRem4.Crem_Contig15    51046 49 -  1794024 TGGAAATA-------GAAAGAGATGT--ATCATATTGCCGAGGTA----------CCTGAGAAGCGAT
i caeRem4.Crem_Contig15 I 16 I 11
s caePb3.Scfld02_0       3190391 56 -  4147112 CGGAAATATCAATG-GCAAAAGCTTCCGATTGTATTTCCGGGTTT----------TCTAACTA-TGAT
i caePb3.Scfld02_0      I 46 I 19
s caeJap4.Scaffold18213   186455 38 +   720316 -----------------------------TCATAAAGCGTGGGTAACGAAATCAGTCTATAAA-AGAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17199246 820 - 21540570 I
e caeSp111.Scaffold582    449728 87 -   484378 I

a score=-25818.000000
s ce10.chrX              2450254  59 + 17718866 -AAAAAGTTAATCTAG---TGGTTACAACATT-----TACTAGCTT-------------CCAAA------------------------------------------------------AAGTTTTT--------TAAATAAAC
s caeRem4.Crem_Contig15    51106 134 -  1794024 -GGCCGGTTGTTATCAATAGAATAAAAACATTCGTAGTAGCAGTAATCTGCATCTCTTCTTAAATGGCTTTCTTTATGAGCTTTGATCAATGGAGACTAGcgcacaacaaaaaaaaacaatctttg--------tgattaatt
i caeRem4.Crem_Contig15 I 11 I 11
s caeSp111.Scaffold582    449815  47 -   484378 -AATAAGT-----------TGATCAAAACGTTTGCA-TGCGAGTAA-------------TTGAA----------------------------------------------------------------------TGACCgatc
i caeSp111.Scaffold582  I 87 I 8
s caePb3.Scfld02_0       3190466 109 -  4147112 -GACAtgtattttttattatgattATAATGTTCAGA-CGAAAGTTA-------------TTAGA-----------------CCCAATAAGTACAG-CTTGCG-ATATTTGGtaataacaatttttctagatttctgaCCGatc
i caePb3.Scfld02_0      I 19 I 8
s caeJap4.Scaffold18213   186493  86 +   720316 AAAAAGGCGGCTGT-----TGGCGAGAATTT------TACAACCTA-------------GTTGA--------------GTATCTGACTAATTCAG---------------GTCAGAAtgagattttttgaaatttaaat----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17199246 820 - 21540570 I

a score=113525.000000
s ce10.chrX              2450313 432 + 17718866  
s cb4.chrX              17200066 384 - 21540570  
i cb4.chrX              I 820 I 1268
s caeRem4.Crem_Contig15    51251 364 -  1794024  
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    449870 361 -   484378  
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3190583 345 -  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   186579 365 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=9471.000000
s ce10.chrX              2450745 15 + 17718866 ATTCACCATATGCCG
s caeRem4.Crem_Contig15    51615 15 -  1794024 ATTCACCATATGCCA
i caeRem4.Crem_Contig15 C 0 I 113
s caeSp111.Scaffold582    450231 15 -   484378 ATTCACCATATGCCA
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3190928 15 -  4147112 ATTCGCCATATGCCG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   186944 15 +   720316 GTGCACTCTATGCAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17200450 1268 - 21540570 I

a score=-1328.000000
s ce10.chrX              2450760 2 + 17718866 -CT
s caeSp111.Scaffold582    450251 2 -   484378 -CA
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3190948 2 -  4147112 -CA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   186959 2 +   720316 GT-
i caeJap4.Scaffold18213 C 0 I 92
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    51630 113 -  1794024 I

a score=3236.000000
s ce10.chrX              2450762 52 + 17718866 ACC------------AGCTTTCAAATG------------TGTTCGCTTGCACATGACAACGTTCAATGTTGTGTCA
s caeSp111.Scaffold582    450253 63 -   484378 ACC------------CGATTTGAAA-GCGACGAATTGGTTGTTTTATGAGGTATCGTCACGTTCCATACCGTGCGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3190950 76 -  4147112 ACCACATTTTGGAGGCGATTTTAAAGGCGGCGAATTGGTTGTTTTATGAGGTATCATCACGTTTTACACCGTATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   186961 92 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    51630 113 -  1794024 I

a score=10.000000
s ce10.chrX              2450814 28 + 17718866 AGTG---------TAGTGCCATTAGAA--A-----------ATGAC---ACCG--
s caeSp111.Scaffold582    450316 42 -   484378 AATGAGCGCATTACACTCCCTTGAGGAACA-----------ATTACTTTGCCG--
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3191026 41 -  4147112 AATGAGTGCATTATACTACCGAGAGGAACA-----------ATTAC-TAGCCG--
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   187053 45 +   720316 AGTG---------CATCACTATGAGGAACAACTTGCGATATACTAC-TTGccgct
i caeJap4.Scaffold18213 I 92 C 0
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    51630 113 -  1794024 I

a score=63857.000000
s ce10.chrX              2450842 318 + 17718866 TGTT-----------TTTTTTTCATCTCAGAAAG-ACAAAAAAAAGTTGGTCATAAATA-GTCTGACCTTGCAG----ATTTTCCTCTTA--TT-----------TTTCCTC---TAGTTTTACCACGCGCGATACTTTCCAACTTTCCAATAAAAA-AAAAAGTAAGTTACCCTCAATTGGAGACGCCGTCGTTGGTCGCAAAAGAGCGGTGAAAATGGGTTGGAAATATTATTAGAAGGCGACGAATAACACAAACTGATTGTCT---------TCTTTGCCAACATT---------CTCTAA-TTTTGGCAACACCCGAATTTTGGAGAGTTGAATCGTGGAATATTGGTGGGGTGGTTTGCGAGAGA
s caeRem4.Crem_Contig15    51743 279 -  1794024 tgtt-----------tttttgctacctcAGAAAA-CCGAA-----------CAAAAATAGGCCTGACCTtgcag----ttttttctcttcaatt-----tacttttttcactCACTCCTTTTACCTCTGACGATACCTTT--------CAATAAG---AGAATGAAAGTTACCCTCAATTGGAGACGTCTTCGTTGATCGGAAATGAACGGTGAAGAAGGGTTAGAAATATTATTTGGA---AACGGATAGCATATGCTGATTGCCT---------TCTTGGCCAAC------------ATCTAATTTTTTGTGGGTTTTCGAGAT----GAGCCGTATAATGGAAT---------------------AGT
i caeRem4.Crem_Contig15 I 113 I 21
s caeSp111.Scaffold582    450359 289 -   484378 TGTTT----------TTTCTAGTAACTTCAAAAA-CCGAA-----------CAAAAATA-GTCTGACCTTGCag----attttcctcttc--tt-----aagtttttttctt-agtttttccACCTCTCGCAATACTTTC--------GAATaagagagaattgaaagTTACCCTCAATTGGAGACGTCGTCTCTGGTC------GAGCGGTGAGGAAGGGTTAGAAATATTATTAGGA---GACGAATAGAATATACTGAttgccttcttcttcgtcttgcCCAACATA-TTGCC---ATCTAA-TTTTGgtggtttttgaatat----gaGCTTGCTGTTGgaat---------------------aga
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3191068 294 -  4147112 TGTTTTTCTTAGTTCTTTTTAGTAACCCAagaaattcgaa-----------caaaaata-gtCTGACCTTGCAG----ATTttactcttc--ttctccaaacttttctaact---tttttccacCTCTCACAATACTTTC------------------CAAATAAATGTTACCCTCGATTGAAGACGTTGGCGTTGGTCGGGAAAGAGCGGTGAAGAAGGGTTAGAAATATTATTATGA---GAGGGATAGAATAGACTGATTGTCT---------TCTTAACCAACATGTTTGCCTCGGTCTGA-TTTTGCTAGTTTTCGAAGAT----GAGCCTGACGATGGAAT---------------------AGa
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   187098 236 +   720316 tgttttt--------tttgttgcttccCGTAACA-ACAAAACACTA-----CCGAAATA-GTCTGACCTTGCGATTCCATTTCCCTCttt--tt-----------------t---------------------tACTCTC------------------AAA--GAAAGTTACCCTCAATTGTAGACG---ACGTTGGTTGGAAGACAGTGGAGAAAAAGAGTAAGAAATATTATTAGAA---------TAACTGCAACTGATTGTCT---------TGTCTGCTAACA-----------TTCTAA-TTTAGGCGGCA---AGAGATAGAGGAATGAAATGGGAGAAG------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17200450 1268 - 21540570 I

a score=-4525.000000
s ce10.chrX              2451160 42 + 17718866 ---ATGGCGGTGTGACGACGACGACGGCGGCGACTGGGCGAAGCG----------
s caeSp111.Scaffold582    450648  9 -   484378 ---ata---------------------------------aaaaga----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3191362  9 -  4147112 ---ata---------------------------------ggagaa----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   187334 22 +   720316 AAGATG---------------------------------GAAAAAGACGACATCA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    52022 21 -  1794024 I

a score=52238.000000
s ce10.chrX              2451202 115 + 17718866 GAAGACACTGAGGCGATGTTTTGGGGGAGCAGCTGCCA------TGGCGCAATTCAGGCAGCGCGCGAGAATATGTGGGGAGATAGATGATTGAATTTGATAGGTTCGTTATGTTGGAAGG---
s caeRem4.Crem_Contig15    52043 109 -  1794024 gaatACACT--AGCGACGTTTTGGGGGAGCAGCTGCCATGCCTTTGGCGCAATTCAGGCA--GCGCGAGGATGTGTGGG-----AGATGATTGAATTTGATAGGTTCGTTATGTGGGA------
i caeRem4.Crem_Contig15 I 21 C 0
s caeSp111.Scaffold582    450657 102 -   484378 gaagacaCT--AGCGACGTTTTTGGGGAGCAGCTGCC-------TGGCGCAATTCAAGCA--GAGCGAGGATGTGTAGG-----AGATGATTGAATTTGATAGGTTCGTTATGTGGGA------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3191371 109 -  4147112 gaagacaCT--AGCGACGTTTAAGGGGAGCAGCTGCCACGCCTTTGGCGCAATTCAGGCA--ACGCGAGGATGTGTGGG-----AGATGATTGAATTTGATAGGTTCGTTATATGGGA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   187356  77 +   720316 ----------------------GGGGGAGCAGCTG---------TGGAGTCAGT--------ACGAGAAGATGTGAGGG-----AGATGATTGAATTTGATAGGTTCGTTATGTTCAA---CGG
i caeJap4.Scaffold18213 C 0 I 634
e cb4.chrX              17200450 1268 - 21540570 I

a score=6490.000000
s ce10.chrX              2451317 26 + 17718866 CTCGACACTGACAAAGAGGCAGAGGA
s caeRem4.Crem_Contig15    52152 23 -  1794024 ---GACACTGACAGAAAGACGAACGA
i caeRem4.Crem_Contig15 C 0 I 467
s caeSp111.Scaffold582    450759 23 -   484378 ---GACACTAACGACAAGACAGATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3191480 23 -  4147112 ---GACACTGACAGAGACAGAGAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I

a score=-1427.000000
s ce10.chrX              2451343 144 + 17718866 GCACATATCTGGTGCGGTGAGGCGGTAGAGTTAGACGAAATGAGATTTTTTTTGTTTTGTTTTTGCCGTTATACTCGTGGATATACAGATTTTCTCAAAACTTGGTTCGAATAATTAAGTTAGGCCATTTTTTTCCAATTATTG
s caeSp111.Scaffold582    450782  84 -   484378 --ACGAATCTGGAGTTGTTGAGCAATAGAGATATAGA---------------------------------ATACTAGAGGACATAGA-----------------ACCCCAGTAAAT--------CTACCTATTTccaattattg
i caeSp111.Scaffold582  C 0 I 30
s caePb3.Scfld02_0       3191503  82 -  4147112 --ACGAATCTGGA---GTTGAGCACAGAAGA-----------------------------------------AGTAGAGAGCACAGACTACCTCTC-------TATTCCAATAACT--------CCACTTTTTATATATTGTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    52175 467 -  1794024 I

a score=0.000000
s ce10.chrX              2451487 51 + 17718866 ACAAGTCATAAAATTTACGAAATTAGTTTTTTTGAGCACAATTTGAGCAGT
e caePb3.Scfld02_0       3191585  0 -  4147112 C
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeSp111.Scaffold582    450866 30 -   484378 I
e caeRem4.Crem_Contig15    52175 467 -  1794024 I

a score=11401.000000
s ce10.chrX              2451538 487 + 17718866  
s caeSp111.Scaffold582    450896 395 -   484378  
i caeSp111.Scaffold582  I 30 I 17
s caePb3.Scfld02_0       3191585 322 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    52175 467 -  1794024 I

a score=-5630.000000
s ce10.chrX              2452025 386 + 17718866 CTTACAGATTTTGATGCTGGAAAAGAAATACAAAATAAAATTTTTTCGAAAAAAAAACAATAACTTTCAAAATTGAGAACACTTTTTTTTGACTAGACGGTCAATATCTGGGGAGAACAAAATGTAGCCGTAGTGGTGCGGGGTGGTTGGTGATGCAGTAGGAAAAGTTCAAAGGAGGTGAACTGGAAAAATTGTATTAATATTTCAACAAAACTTTAATATTTTCTCGAACATATTAGAATTATGAAATTTTAATTTGAGAGAGGAGATATTGAAATGAGGAATGGACTGTGCAACTACGTAAGGTAGATAACCATCTAAAAATAATCTAGAGCACGGGGCCACTGAAAATCGAACCAGGAACGGAGCCGGAAAAGGTTTCTACT
s caePb3.Scfld02_0       3191907 147 -  4147112 CCTCC--ACTGTGAGGTtagcaaaga------------------------------------------aaaatgaagaac---------------gtAGGTCA-------GAACGAACAGAATTATGTT--------------CGATTCATTGTTCAATACTAAAAAACCAAAG-------ACCGAAAg--------------------gcaatttcgaaatttgttggAACAC----------------------------------------------------------------------------Ttgtcatttcaaaata--------------------------------------------------------tatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeSp111.Scaffold582    451291  17 -   484378 I
e caeRem4.Crem_Contig15    52175 467 -  1794024 I

a score=59.000000
s ce10.chrX              2452411 14 + 17718866 GTCATAAATCATGA
s caeSp111.Scaffold582    451308 14 -   484378 gtgaaaaatttcat
i caeSp111.Scaffold582  I 17 C 0
e caePb3.Scfld02_0       3192054  0 -  4147112 C
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I
e caeRem4.Crem_Contig15    52175 467 -  1794024 I

a score=633.000000
s ce10.chrX              2452425 5 + 17718866 AGCTT
s caeRem4.Crem_Contig15    52642 5 -  1794024 AATTT
i caeRem4.Crem_Contig15 I 467 C 0
s caeSp111.Scaffold582    451322 5 -   484378 aattc
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3192054 0 -  4147112 C
e caeJap4.Scaffold18213   187433 634 +   720316 I
e cb4.chrX              17200450 1268 - 21540570 I

a score=7103.000000
s ce10.chrX              2452430 19 + 17718866 ATTGATAGG---ACTCATCAAA
s cb4.chrX              17201718 19 - 21540570 ATTGATTGG---AGTAATCATA
i cb4.chrX              I 1268 C 0
s caeRem4.Crem_Contig15    52647 19 -  1794024 ATTGATCCG---ACTCATCAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    451327 19 -   484378 attGATTAA---ACTCTTCATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3192054 19 -  4147112 ---gattAAACTACTCATCATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   187433 634 +   720316 I

a score=122507.000000
s ce10.chrX              2452449 452 + 17718866  
s cb4.chrX              17201737 504 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    52666 464 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    451346 478 -   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3192073 457 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   188067 444 +   720316  
i caeJap4.Scaffold18213 I 634 I 1035

a score=2794.000000
s ce10.chrX              2452901 12 + 17718866 GAAC--GATGAGAG
s cb4.chrX              17202241 14 - 21540570 CCATACGATGAGAG
i cb4.chrX              C 0 I 1224
s caeRem4.Crem_Contig15    53130 12 -  1794024 CGTT--GATGAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    451824 12 -   484378 CGTT--GATGCGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3192530 12 -  4147112 CGTT--GAAGCGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   188511 1035 +   720316 I

a score=2955.000000
s ce10.chrX              2452913 35 + 17718866 CGCAATTGGAAACAACACACAGAGATGAGGGGAGA---------
s caeRem4.Crem_Contig15    53142 36 -  1794024 CGCAATTAGAAAC--------AAAATGAGGAGAGAATGAGACCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    451836 28 -   484378 TGCATTTGGTGAC-------AAAAAAGGGGTGAGA---------
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3192542 27 -  4147112 GAAAATCGGTAAC--------TAAATGAGGAGAGA---------
i caePb3.Scfld02_0      C 0 I 1125
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I

a score=1122.000000
s ce10.chrX              2452948 16 + 17718866 CGCGATCTGCTGCATG
s caeRem4.Crem_Contig15    53178 16 -  1794024 GAAGATCTACTGAATG
i caeRem4.Crem_Contig15 C 0 I 532
s caeSp111.Scaffold582    451874 16 -   484378 GACGATCAAATGTGAG
i caeSp111.Scaffold582  I 10 C 0
e caePb3.Scfld02_0       3192569 1125 -  4147112 I
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I

a score=752.000000
s ce10.chrX              2452964 64 + 17718866 ACCGAACAGGTCATCCCCCAAGAGGGCGAATAGGAAGACGACAATGGCTCGTC-TATTTCAGAAG
s caeSp111.Scaffold582    451890 55 -   484378 TACAAGGAGACGATTTGCTGAGAGGGTGA----------GAACACGGCTCACCATGTTCCAGAAG
i caeSp111.Scaffold582  C 0 I 534
e caePb3.Scfld02_0       3192569 1125 -  4147112 I
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I
e caeRem4.Crem_Contig15    53194 532 -  1794024 I

a score=0.000000
s ce10.chrX              2453028 1482 + 17718866  
e caePb3.Scfld02_0       3192569 1125 -  4147112 I
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I
e caeSp111.Scaffold582    451945  534 -   484378 I
e caeRem4.Crem_Contig15    53194  532 -  1794024 I

a score=1028.000000
s ce10.chrX              2454510 137 + 17718866 TCTGATCAAAACTTTTATTTTTGGACAAAATGTTTAATGAGTGCCGAAAATACTAATATTTGCCGAACAAATCTGCCAAACTTGG----CACAATGA-TATATGTTC----AATTAAAAAACTTCAAAACTTGACTACCGGGAAAT
s caeRem4.Crem_Contig15    53726 137 -  1794024 tcttattatttcctttattttattacaacccttattttGAACGTTAAAAATTGGAACATTTTGTATAAAAA-CAGCCAAATATGAGTATCTTAACGACTATATGTTTGCCTAGTTAAACATTTgcaaaatatta--------aaat
i caeRem4.Crem_Contig15 I 532 C 0
e caePb3.Scfld02_0       3192569 1125 -  4147112 I
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I
e caeSp111.Scaffold582    451945 534 -   484378 I

a score=-1422.000000
s ce10.chrX              2454647 36 + 17718866 ---------------ATTGAA-AAACACAACCAGTTCTCCGAATTTCCATCA
s caeRem4.Crem_Contig15    53863 43 -  1794024 attctcactcaaaatataaaatagattgtttcaatgtttatAA---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    452479 28 -   484378 ---------------attgaatgaacATAACCAGTTTTCAGAT---------
i caeSp111.Scaffold582  I 534 C 0
e caePb3.Scfld02_0       3192569 1125 -  4147112 I
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I

a score=5579.000000
s ce10.chrX              2454683 78 + 17718866 ACAGTACGCAAATT--TGGTATAACAAATCAATTTAGACTCCATG-------TTGG-----AAA--GTTTTCCGCGATT--CACACAAAACAGATA
s caeRem4.Crem_Contig15    53906 85 -  1794024 --------CTAGTTCCCAATACACCGAATCAC---TCATCATATGGAATCTATTGgtgagaaaattgttttccacaACTTTCACATAAAAGAGATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    452507 83 -   484378 ------CACAAATT--CAGTACAACAAATCATCCATCGTCACATGGACttgattca-----aaattgttttccgaGAGGAACTCATGTAAATGATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3193694 84 -  4147112 ACAGGTCACGAATT--CAGTACAACAGATCAACCATCACCACGAG----TTATTCG-----AAG-TGATTCCTACCAGTACCGTatgaaaaagata
i caePb3.Scfld02_0      I 1125 C 0
e caeJap4.Scaffold18213   188511 1035 +   720316 I
e cb4.chrX              17202255 1224 - 21540570 I

a score=37.000000
s ce10.chrX              2454761 14 + 17718866 G-AAACTG--TCGAAAC
s caeRem4.Crem_Contig15    53991 16 -  1794024 G-AAACAGAAAAGGGAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    452590 16 -   484378 G-AGATGTGGTCGAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3193778 13 -  4147112 gaaaatgt----gaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   189546 14 +   720316 G-AAACTG--TCGAAAT
i caeJap4.Scaffold18213 I 1035 C 0
e cb4.chrX              17202255 1224 - 21540570 I

a score=92291.000000
s ce10.chrX              2454775 359 + 17718866 GAAAACACTAGTTGACGCTGACTTT-GGTTGTCATGCCCC-TTTTGACATCTC-------------------------CCCTCAACTATCCAGTAGTATAATTGCCGCGTAAATTGCGTGATATTCTCGT------TTCTATGGTTGA-CTAGTTGAGGTAGTTGAGGTCACTATTTCTCATTAC-TGCACT-ACTTT-CCGC-------TT---A--TTTCAATTC-GCACAGCAC-ATATCCGCTCGCAATC----CTGAATGTTCG-------------GTGCTGCGCGAG--------------------------TGTTTCAATGTTTCGGTCTTC-TTTCTAGCACAAATAAAAGGAA----------------------GAAG-CCATCTCACATCCATGTACTCATCTAATTATCGTTGAGT---AAGGGTGAGCCTTCGT--CTCTT-------------CCCGTTT-------GCCAGCTTCTGCCTT---TCTT
s cb4.chrX              17203479 434 - 21540570 GAAAACAATA-------GTGGATGT-ATATTTCTAGGCAA--TCCGGTCATCT-----TTTCGCCCCCAACGCC---ACTTTTGACTATCC---AGTATAATTGTCGAGTAAATTGCCTGATATTCGCATGTGTTGCTTCCACTGCGA-C----------GGCGGAGgtcacaa------att-----cacaaattca-cgGC-------ATTCGA--TTTTAACTCTCTATTCCTA-TTCCGGGACCTGAATC----CGGAATGTTTTAGGATTCTGATGTGCG-TGTGCGTGTGCCATCGGGGGCAAATGTATGTGTTTGTGTCAATGTTTCGGTTTCC-TTTCTAGCACAAATAAAAGGCAAAATGGGTGgaaagaggggggggggg-gcatctCACAACCATGTACTCATCTAATTATCGTTGAGTAGAAAGAGTAAGCCTTCCTAGTCTCGTTAC---------CCAGCCTCCCCGT-TTTTGCTTCTGTGTCGTGTCTT
i cb4.chrX              I 1224 C 0
s caeRem4.Crem_Contig15    54007 391 -  1794024 GAAAACAATA-------GTGACTTT-GGTTGTCAAGTCCGTTTCAGGCAATCA-----TTTCCCCCACTCCGCTA--AACTTCAACTATCC---AGTATAATTGTCGAGTAAATTGCGTGATATTCGTGT------CTCTCTATG---------------GTTAGGGGTCACTAT---TCATT-----CACAGGCTTT-CCGC-------TT---G--TTTTAACTC-CTATCGCC--------GCCCTGAATT----CTGAATGTTCGGGATGTCTCAAATGTG-TGCGTGTG--------------GTTATATGTAGTTGTGTCAATGTTTCTGTTTCCTTTTCTAGCACAAATAAAAGGAAA-------------------GGGGGG-CCATCTCACAACCATGTACTCATCTAATTATCGTTGAGT----AGAGTAAAGCCTTTTTGCCCCGcttcttcctattgccttcttcttcttcttctgcttctgtGTC--GTCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    452606 382 -   484378 CGAAACAATG------GGTGACTTTCGGTTGTCATCTCTC-TTTAGAGATTCCGGTCTTTATTTCTGTTCTCTCA--AACTTCAACTATGC---AGTATAATTGTCGAGTAAATTGGATGATATTCCTGT------CTTTCTTTCTAT------------GGTAAGGGTCAGT-------ATT-----CACA-GCTTT-CCGCACTCTCTTC---AACTCTCAATTC-CTATCGTGT----------CCGAATT----CTAAATGTTCG-TTTGCCGCCTATGTG-TGCGTGTT--------------------------TGTGTCAATGTTTCTGTTTCC-TTTCTAGCACAAATGAAAGGAAA---------------------GGGG-CCATCTCACAACCATGTACTCATCTAATTATCGTTGAGT----AGAGTAAGCCTTCTT--TCCTTTTACCCCCCATCTCCTCCCTCCCCT--TTTTGCTTCTGTGTC--ATCTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3193791 351 -  4147112 aaaA-------------GTGACTTCCAGTTGTCATGTCCC-TTTAGGCAATCC---------CACCATTCCACTC--AACTTCAACTATCC---AGTATAATTGTCGAGTAAATTGCGTGATATTC--GT------GTGTCTATAAGA------------GGGGGAGGTCAGTAT---TCATT-----CACA-GCTTT-CCGC-------TT---A--TTTTAACTT-CTATCGCATCTTCGGCCCCCCGAATC----CTAAATGTTCGAAATGCCGCCTATGTG-CGTGTTTG--------------------------TGTGTCAATGTTTCTATTTCC-TTTCTAGCACAAATAAAAGGAAA---------------------GGGG-CCATCTCACAACCATGTACTCATCTAATTATCGTTGAGT----AGAGTaaaccttctt--ttcctttacC--------CCTCCCT-------------TTTTGTGTC--GTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   189560 375 +   720316 GAAAACAATAGTTGACACAGACGTT-GGCTGTCATGTCCCTTTTATGTTACCC---------CCCTCTCTCGCCAGCAGTCCCAACCATCC---AGCATAATTGTCGAGT-AATTGCGTGATATTCGCAT------GTGTCAGTATGTGCTAGTAT----GTCCGGGGTCACTAT---TCATTCTAGGCACG-ACTTTGCCGC------CTC---G--CTATAACTCACTTTCGAAA------CAACTCGAATCCGCTCTTGATGATTGGTGTGGCGCGCGCGCA-CGCACG-G--------------------------CGTGTCAACG------------TTTTCAGC---GACAAGAGGAAA---------------------GGAGCCCGTCTGAGAAGCGTGCACTCATCTAATTATCCCGGA------GGAGTAAAGCTTCTA--ACCCTTTTA---------CATGTTTTTCAA--TGCTAGATTTTTCCT--GTCTT
i caeJap4.Scaffold18213 C 0 I 406

a score=23744.000000
s ce10.chrX              2455134 194 + 17718866 G------------------ATGGC----------------TCACAAGCAGCTGCGAAAACATTTAGGAG-AAGGTCGAG----ATGCGGTAAAATGACGAGATTTCTCACAC----------------AATTTT-------------GTGTCGGAAAGTCGCATTATTGTTTTGG--CAAGACAA-AATGGGCAAAACGAGAAGAATTGCGA--------AATTAAAAAAAGCTA-------------TGCTAT---GGAGCCTTTACTGAAGAAGAGCCCAAAACAAA
s cb4.chrX              17203913 248 - 21540570 GTCTTCAAGCGTTGGGAAAAAGGCAATGAGACACACACATACATGGGCAGCTGCGAAAACATTTAAGAGAAAGGTCTAAGGATGCGCGGTAAA---ACGAGATTTTTCTCGCCGTCCCCTCCTTCTTGGCTTTT----ATGG-----GAGTCGACGATT----------TTGACA--Ttcgaaga-aaatag-aaaatgaga--aactgcgaaaaattttaatt---aaaagctggaaaatgaaagttttc-gtcaaga------tttttaaaa--atcccaacTCAT-
i cb4.chrX              C 0 I 68
s caeRem4.Crem_Contig15    54398 156 -  1794024 G------------------AGCGCAATGAGACA---------GCGGACAGCTGCGAAAACATTTAAGAG-AAGGTCTAG----ATGCGGTAAA---ACGAGATTTCTCACGC----------------AATTTT----ATGG-----GAGTCGGAGGTT----------TTTCGG--TTGGGTGA-AA-------------------TGCAA--------AATT---AAAAGTCA-------------TGC-GT---GA------TACGGTAGC--ATCCAAGC-----
i caeRem4.Crem_Contig15 C 0 I 37
s caeSp111.Scaffold582    452988 149 -   484378 G------------------AGCGCAATGAGAC-------------AGCAGCTGCGAAAACATTTAAGCG-AAGGTCTAG----ATGCGGTAAA---ACGAGATTTCTCACGC----------------AATTTTTGTGATGG-----CAAACGGAACAT----------GGCCggaaggaaatga-aa-------------------tgcAA--------AATT---AAAAGTCA-------------TGC-GT---GG------TACGGTAG----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3194142 176 -  4147112 G------------------AGCGGAATGAGACA-------GCAGAAGCAGCTGCGAAAACATTTAAGAG-AAGGTCTAG----ATGCGGTAAA---ACGAGATTTCTCACGC----------------AATTTTTGCCATGGATGTCCCGacggaaatt----------ttccgggatAAGATGAGAA-------------------TGCAA--------AATT---AAAAGTCA-------------TGCGGT---GG------TACGGTAGC--ATTCCAAAGCAAA
i caePb3.Scfld02_0      C 0 I 117
e caeJap4.Scaffold18213   189935 406 +   720316 I

a score=0.000000
s ce10.chrX              2455328 51 + 17718866 ATAAGAGGAAAAAAGGAAGCAAACTGGATTAGAATAGTCTTTCGGTTCACA
e caePb3.Scfld02_0       3194318 117 -  4147112 I
e caeJap4.Scaffold18213   189935 406 +   720316 I
e cb4.chrX              17204161 68 - 21540570 I
e caeSp111.Scaffold582    453137  0 -   484378 C
e caeRem4.Crem_Contig15    54554 37 -  1794024 I

a score=-18411.000000
s ce10.chrX              2455379 114 + 17718866 CGCAGCTAACTCACTTAAAAAGTGCACATTCCGACCAACAAACTGAAGTTGAAGTTA-GATTTGCAAA------AAAAGTCTCAATTAGAAGTTCACGGCAATAAATTCTACGAA---------------ATGAGA-----------------------------
s cb4.chrX              17204229 132 - 21540570 CGTGTctaatttgctcaa-------aaatggaagaatATGG---------GACGAGACGGTTTATGAACTAACCTAAA-----------------AAGGGAACGTTTTCAAAaggttctctgaaaatttagtgGAATTTTTATGAACTTTTGTTCGAACAtgata
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig15    54591  99 -  1794024 CTAGCTCACTATTCTC-A-------GATTGGAGtcaaatga---------gaaatga-gttttacgag------taaa-----------------atgaaattgaattcaaaagg---------------GAAGCAT-------AACCAttgc---aaaatgaaa
i caeRem4.Crem_Contig15 I 37 I 77
s caeSp111.Scaffold582    453137  69 -   484378 --------------------------CATTCAGGCAAACAAAC------CAACGTCA-GATTTGCGTA------GAAA-------------TCTCATTATATTGTTTTCGACATC---------------TCGAAA-----------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3194318 117 -  4147112 I
e caeJap4.Scaffold18213   189935 406 +   720316 I

a score=-3874.000000
s ce10.chrX              2455493 42 + 17718866 CAGTTGGC----------TCGACATTTTTCATTAAAATTTGATGATATAATA----
s cb4.chrX              17204361 47 - 21540570 aaaatgatttcagcAATATCTAGCCCTCGTATC---------TGATAGAAATCGCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    453206 17 -   484378 ------------------GCTAGATTTc-----------------tataaat----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3194318 117 -  4147112 I
e caeJap4.Scaffold18213   189935 406 +   720316 I
e caeRem4.Crem_Contig15    54690 77 -  1794024 I

a score=-11234.000000
s ce10.chrX              2455535  77 + 17718866 -------------------------------------TAGAAAAATATTTGGTTTTTTTTTTTTTGAAAATATCTGTGGAGAATTTTTCAAAAAT-CGTCTGAATATTGAAAA-------TT
s cb4.chrX              17204408 118 - 21540570 CTTTGGGtcagaaaataatttcagtgTTAAATTTCAACAGAAAAGGTGCTTGTCCTAAA--TTTTAAATCtcgttttcaagaatttttcaaatgtgaacctgatttttgaacaaacagtt--
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold582    453223  45 -   484378 ---------------------------------------gaaaaagaatgggTCTCGAA-----------------------------AAGACAGAAAACTAAATTTAGACAA---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3194435  27 -  4147112 -------------------------------------cagaaaaaggaaatgtc-------------------------------------------------atattgaaaa---------
i caePb3.Scfld02_0      I 117 C 0
e caeJap4.Scaffold18213   189935 406 +   720316 I
e caeRem4.Crem_Contig15    54690  77 -  1794024 I

a score=-31255.000000
s ce10.chrX              2455612 122 + 17718866 TCTGCTGAAAATTTCCGGAA-------------AATGTGTCGATTTTTGTGT-GTTTTTTCGGTTGCTTCAAGT------GAACTCA--TA----CTTATTCCCAGATTACA------------------TCCTTAAATTTAAATGCAAAAGCTCATGCCCAACTG---
s cb4.chrX              17204537 151 - 21540570 ---cccgaaaat--tcggaacttcACTTTAAGATGTATTTCAAGACCTAGAGCCTtgattaaatt---taaaatttgaccGAACTTCCTTAAAATGATAGTGCTAAattacaa----aaagaaaattctagtttGGAGGTT---TGAataaatagaagcccacccg---
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig15    54767  51 -  1794024 ---CCTG-------Ttggaact---------------tttcaa--------------------------aaaat------gaacttttcca----GATGTCACTAGGTTGCA---------------------------------------------------------
i caeRem4.Crem_Contig15 I 77 C 0
s caeSp111.Scaffold582    453268 133 -   484378 ----ctgcaaaa--atgaaatg-----------ggcATGTCGGTTTACGCGTCGCTAATTCGCTCA--AAAAGT------GCACATC--------AGAAGCAGTAAACTATGATGGTTATAAAGGAACAGtctttgaaatt---tgtgaACGAGCATTCCGGTCAACTG
i caeSp111.Scaffold582  C 0 I 73
s caePb3.Scfld02_0       3194462  99 -  4147112 ----atgaaaaa----ggaat------------ggCATGTTGGTTTACGCGTCGCTAATTCGGTC---AAAAGT------GCACATC--------AGAATCAGCAGACTATGGTGGTTAAGGAAAAAC-----TCGAAGtg----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   189935 406 +   720316 I

a score=-25790.000000
s ce10.chrX              2455734  94 + 17718866 -----------------------------------TCATAT---------------------------------TTTGT---------AGAATTGCCGGTCGGCAA----------TTGCCGCGCACCC------------------------------------------TTAG-GCCCCAATGGTTTTTTCCAACTTTTCGAAACG------------------TTCAG---TCATGACCAAT-------
s cb4.chrX              17204688 244 - 21540570 ttacttgcactttgagctcatttatctggTTTCCTtcaaacgatatcaaaaaacagTCTACTGACAAAatgaattttgtaaatttaccaacatt-ttagtagttgacaaattttcgatatctttcacacgatatatatgggctcaaatcAGGAACTCGAAGCAACCAGAG-CTAGAAAAACAAAGGTTATG---GGTTAACTGCAATGCTTttaaatgatgaaaaattaagTTTGAACGAAAAGA---GAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    54818  81 -  1794024 --------------------------------------------------------------------------TTTgt---------aacatt-tta------------------------------------------------------------aaacagtCTGAGTCTAGGACCAAAGAAGTTTTT---AGCGAACACAAATG------------------Ttaag---aaacagagaaa---aaac
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3194561 107 -  4147112 ----------------------------------ttc-------------------------------------tttctcaaaaaatgagcatt-ccAGTCAAAGA----------ACATGGTCCACTC-----------------------------TAACTAAATGAGTCTAG-------AAAGCTTTT---AGAGCATGTTA---------------------CCAAG---GAATAAAAAGGTTTTAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   189935 406 +   720316 I
e caeSp111.Scaffold582    453401  73 -   484378 I

a score=2529.000000
s ce10.chrX              2455828 21 + 17718866 TTCAAGAC---AAAAATTAGTATT-
s cb4.chrX              17204932 13 - 21540570 TGCAaatc-----------ggatt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    54899 24 -  1794024 tgcaaatcatGAGAAATTAgtaag-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    453474 21 -   484378 tGCAAATC---GGAAAttagtaag-
i caeSp111.Scaffold582  I 73 C 0
s caePb3.Scfld02_0       3194668 22 -  4147112 TGCAATTC---ATGGAttagtaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   189935 406 +   720316 I

a score=454069.000000
s ce10.chrX              2455849 821 + 17718866  
s cb4.chrX              17204945 834 - 21540570  
i cb4.chrX              C 0 I 143
s caeRem4.Crem_Contig15    54923 819 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    453495 845 -   484378  
i caeSp111.Scaffold582  C 0 I 285
s caePb3.Scfld02_0       3194690 807 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   190341 761 +   720316  
i caeJap4.Scaffold18213 I 406 C 0

a score=600.000000
s ce10.chrX              2456670 1 + 17718866 G
s caeRem4.Crem_Contig15    55742 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 I 229
s caePb3.Scfld02_0       3195497 1 -  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   191102 1 +   720316 G
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17205779 143 - 21540570 I
e caeSp111.Scaffold582    454340 285 -   484378 I

a score=339.000000
s ce10.chrX              2456671 10 + 17718866 TGGTAATATT
s caeJap4.Scaffold18213   191103 10 +   720316 AAGTAACGTT
i caeJap4.Scaffold18213 C 0 I 851
e caePb3.Scfld02_0       3195498  0 -  4147112 C
e cb4.chrX              17205779 143 - 21540570 I
e caeSp111.Scaffold582    454340 285 -   484378 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=766.000000
s ce10.chrX              2456681 36 + 17718866 AACATACGGGAAGTAT---ATGTCTTGTAGGGAAAAAAA
s caePb3.Scfld02_0       3195498 39 -  4147112 AAAATGCGACacttctgtcatttttttcagagaaaaaaa
i caePb3.Scfld02_0      C 0 I 287
e caeJap4.Scaffold18213   191113 851 +   720316 I
e cb4.chrX              17205779 143 - 21540570 I
e caeSp111.Scaffold582    454340 285 -   484378 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=0.000000
s ce10.chrX              2456717 759 + 17718866  
e caePb3.Scfld02_0       3195537 287 -  4147112 I
e caeJap4.Scaffold18213   191113 851 +   720316 I
e cb4.chrX              17205779 143 - 21540570 I
e caeSp111.Scaffold582    454340 285 -   484378 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=91.000000
s ce10.chrX              2457476 1 + 17718866 a
s caePb3.Scfld02_0       3195824 1 -  4147112 A
i caePb3.Scfld02_0      I 287 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I
e cb4.chrX              17205779 143 - 21540570 I
e caeSp111.Scaffold582    454340 285 -   484378 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=-750.000000
s ce10.chrX              2457477 28 + 17718866 accgCCCACACAAAATCCGGAAATTTGT
s caeSp111.Scaffold582    454625 25 -   484378 -ACCCCCA-ACACAAGCGGTTGGTTTG-
i caeSp111.Scaffold582  I 285 C 0
s caePb3.Scfld02_0       3195825 23 -  4147112 GTCACCCA-ACAAGA---TGCGAATTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I
e cb4.chrX              17205779 143 - 21540570 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=774.000000
s ce10.chrX              2457505 6 + 17718866 TGAAAA
s cb4.chrX              17205922 6 - 21540570 tgaaaa
i cb4.chrX              I 143 C 0
s caeSp111.Scaffold582    454650 5 -   484378 -AAATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3195848 5 -  4147112 -GAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I
e caeRem4.Crem_Contig15    55743 229 -  1794024 I

a score=87476.000000
s ce10.chrX              2457511 339 + 17718866 AACCAAAGCTTACCGAAAACAAAA----------CTTAGAT----------TAAAA-------AAATGATTTGACCGCCAGATTAAGC-AAGATGACGTCG-------------------------------TTCCTTTTC-------------AATTCAACACCTTTAAT----------------------------CGCCTCTTC-AAATTAGATTTT-GTGAACAA---AAAAG-GACGAAGAGAGA-GAGGAGCAAAAGAAACGCGATTCTTGTTTGATTTCCGGAGTTTTGCCAGCGAGCCTC-ACAAGTCC----------TACACGGAATCAAGTGAGGAGGAGGAGGAGAAGGAGGTATTCGGATTTCAAGACG-------------------GAGAAACGCAATATC-TAG----GGAAAATTGGGAGCAT---TTCAGTAAATAACAAAA-CAC--GGAAAGTATAATGAATTCTT
s cb4.chrX              17205928 416 - 21540570 ---aaaaatcaaccaacaacaaaaattcgagCAGCATAGCCAAGccaa----aaaacgttt--gaatAATTCGATCACCGGATTAAACAAAAATGACGTCTAGCAAATGC--ATTCACAACCCGCGAG-ATCTTCTTTTTCAT--------AATAATTcaacaagaaaaattcaagaagaagagaattttCAACACCTTTAATC-TTC-AAACTCGATTTTCGGGAAcaa---aaaagggagagagagtCT-GAGGAGCACAAGAAACGCGATTCTTGTTTGATTTCCTGAG-TTTGCCAGGGGTCCTCCCCTTCTTC----------CTCACGGAATGAAGTGAGCC-------------AGGGTATTCAGATTTCAAGATGGCTATTctatgagaagaagaagaaacgcaATATTGTAGGCT-AGG----------------CATGGCGAataacaaaaac----caaaaagttaatgaattttt
i cb4.chrX              C 0 I 88
s caeRem4.Crem_Contig15    55972 361 -  1794024 AAGCAGAGTGaaccaaaaacaaaac---------caGAGCAAAGGGAG---TGAAATTTAC--GAATGATTCGATGACcggattagaaaaaaatgacgcCT---CAACTC--ATcctcacttttcaat-ttttgctcattc-------------aATTCAACATtataa------------------------------tgttt-ttc-aaattagatttt-gttaacaa---aaaag-------gagcac-aaaagaaaaaagaaacgcgATTCTTGTTTGATTTCCTGAG-TTTGCCAGGGG---TCTCCTGTCTC----------CTCACTGAATCAAGTGAGAC------------GAGAGTATTCAGATTTCAAGATGGCTGT--------------GAGAAACGCAATATC-CAGcca-agaaaatt-------tttccgGGCTGAATAACAAAAGCAGGACAAGTTGATGATGAATTCTC
i caeRem4.Crem_Contig15 I 229 C 0
s caeSp111.Scaffold582    454655 359 -   484378 AACCAACGTGGACCAAAAACAAGA----------AGGAG------------CAAAACTTTTTGCGATGATTCGATCACCGGATTAAAT-GAAATGACGTCT---CGCCACTTCTCTTTGATCCGCCactattcactttttcttgc------CACAATTCAACACCTCTAAT----------------------------CGTCT-TTCGAAATTAGATTTT--GGGACAAgcgaaatg-----aaaagaaaagaggagcaGAAGAAACGCGATTCTTGTTTGATTTCCTGAG-TTTGCTAGAGG---TC-----CGTC----------CACACGGAATCAAGTGAGCC------------GAGAGTATTCAGATTTCAAGACGGCTGG--------------GAGAAACGCAATATC-TGGCCATTGGAAATT-------T---TGGGATGAATAACAAAACCAG--GAACAAGacgac--attttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3195853 382 -  4147112 AACCAAAGtgaaccaaaaacaaaa----------cggaGCTGGGGTGGGGACAAAACTTT---CAATGATTCGATCACCGGATTAAAT-AAAATGACGTCT---TGTCCC--CCTTTTGAtcctcttc-attcattttttcgtgcTCCTCTCGCAATTCAACACCTCTAAT----------------------------CGTCT-TTc-aaattagatttttgggaacaa---aaatg-------aagcgTAGGAAAGCTAAAGAAACGCGATTCTTGTTTGATTTCCTGAG-TTTGTCAGAGG---TC-CCGACGTCCTCACAGACACACACGGAATCAAGTGAGCT------------GAGGGTATTCAGATTTCAAGAAGGCTGT--------------GAGAAACGCAATATC-Tggacg-aaaaaatt-------t---caggataaATAACAAAACCAG--GAAAAAGTTAATGGATTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I

a score=-9889.000000
s ce10.chrX              2457850 104 + 17718866 GCCCCATCTCAGTGTATTTGTGCTTTCAACTTTCCGATTCATTAAGATTCAAATCTTTTTTTCTTTCTGAGGCTCTTTCTGATAAATCACTGGCAAACT------TTTAT
s caeRem4.Crem_Contig15    56333  51 -  1794024 ----------------TTTTCGTG----------------------------GAGCTTCCTACTGTAAGAAG-----CTTAG--AAACAT---AATACTAATAAA-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    455014  48 -   484378 ----------------tttgtgtc-----------------------ttTTCACATATTCTTCTGTAAGAGG----TTTTAG-----CAC---GAAACT-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3196235  51 -  4147112 ----------------CCTCCGTCTTGA---------------GAGATTTGAAAGTTTACTACTGTAAGAG------TCTGG-----------GAAACT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I
e cb4.chrX              17206344  88 - 21540570 I

a score=4371.000000
s ce10.chrX              2457954 62 + 17718866 -------------ATGAACAGTACTAGAA----AAACATTATGAATTATATGACTAAATGTGCTTAAATAAACTATAAA
s cb4.chrX              17206432 56 - 21540570 -------------GTGGATACGAAAAG-AGTGAGAACGTGATGAATTA------TAAATGTGACTAAATAAACTTT---
i cb4.chrX              I 88 C 0
s caeRem4.Crem_Contig15    56384 55 -  1794024 -------------GTGGGGAAGGCTAGAAGTGAGAAAGTGATGAATTA------TGAATGTGCCTAAATAAACT-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    455062 50 -   484378 TGATACTAATGAAGTGGATA--ACTAGAAGTGCGGGTAAAATGAATTA------TGAA---------------------
i caeSp111.Scaffold582  C 0 I 45
s caePb3.Scfld02_0       3196286 50 -  4147112 CGATACTAATGAAGTGGGAA--ACTGAGAGTGAGAACGAAATGAATTA------TGAA---------------------
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18213   191113 851 +   720316 I

a score=-5300.000000
s ce10.chrX              2458016 56 + 17718866 CTATAAACTTGTGTACCGCTAACGATGGGTGAGGAAGGAGGAGCCAAGTAGCAGAA-
s cb4.chrX              17206488 24 - 21540570 ------GCTTTGGT-----------------GGGAGGGACGAG---------AAGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    56439 25 -  1794024 -------------T-----------------GAGAATGACGAGTT-GGAAccaaga-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3196352 36 -  4147112 -TGAGAATTTTTGT-----------------TGGTAAAAGGAA---GGAACCAAGAA
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I
e caeSp111.Scaffold582    455112 45 -   484378 I

a score=1057.000000
s ce10.chrX              2458072 19 + 17718866 GAAAAAGAAGAAAACGAGT
s cb4.chrX              17206512 17 - 21540570 AGGAACCA--AGAAATACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    56464 19 -  1794024 agaaaataagagaaatagT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    455157 15 -   484378 --gagaga--aaagaaagt
i caeSp111.Scaffold582  I 45 C 0
s caePb3.Scfld02_0       3196388  9 -  4147112 ----------GAAAAGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   191113 851 +   720316 I

a score=122599.000000
s ce10.chrX              2458091 205 + 17718866 AGTGCTTTGATTTGAAA------------TAAATAAGACTGGTGGTGGAAAAGAG--AGAAGTGTAATCGAATAGG--GGCTTG---AGGAGGGTGCTGGTTCGGCACACTGGTTAATCCAAGAGG------TCCACGTGAATCGAAA--TGAATTCACGGTCTTT--GCTCG---------------CGTGCTCATATGCCCGTATCAAATCAGGCGTA---CTA-----------AACG--TGGTGGTACTCCTGGAGGAATG
s cb4.chrX              17206529 202 - 21540570 ATTGACTTGATTCAAAAGAATTCTTCTTCTagaaaagaat------------aag--aaaagtGTAATCGAATAGG--GGACGGGACGACAATGGGTCCGTG-GGCTCACTGGTTAATCCATGGAGGGCGTCTCCAcgtgaattgaaaattttgttcatgGTCTTTTGGCTCGTG-------------TATGA----AGGTCCGTATCAAATCATGCGTG---CTC-----------TAAA--------------CGGAAGAGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    56483 184 -  1794024 AGTGCtttgatttgaaa------------taaataagaatgCC-----AGGGAAG--AAAAGTGTAATCGAATAGG--GGCTTG------AGGGTGTTGGTT-GGCACACTGGTTAATCCAAGAGG------TCCACgtgaattgaaa--tgaattcaCGGTCTTT--GCTCGTG-------------TGTGCTCATATATCCGTATCAAATCAGGCAta---ctg-----------aaaa----------------gaagaatg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    455172 195 -   484378 ggagctatgatttgaaa------------taaataataatggC-----AAAGAAG--GGAAGTGTAATCGAATAGGGTGGTTTG------AGAGTGTTGGTT-GGCACACTGGTTAATCCTAGTGG------TCCACGTGAATCAGAA--TAAATTCACGGTCTTT--GTTCG---------------TGTGCTCATATGCCCATATCAAATCAGGCATA---CTCAGAgagtggaaaaga----------------gaagaatg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3196397 184 -  4147112 AGTGCTTTGAtttgaaa------------taaataagaaTGCT-----AGGGAAG--AGAAGTGTAATCGAATAGG--GGCTTG------AGGGTGTTGGTT-GGCACACTGGTTAATCCAAGAGG------TCCACgtgaatcaaaa--tgaattcacGGTCTTT--GCTCGTA-------------TATGTCCATATGTCCGTATCAAATCAGGCGTA---CTC-----------AAAA----------------GAAGAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   191964 218 +   720316 AGTGTTTTGATTTGAAA------------GAAATAAGAAGCGG-----AGGCAAGAAAGAAGTGTAATCGAATAGG--GGCTTG------CGGGTGTTGGTC-GGCGCAATGCTTAATCCAAGAGG------tccacgtgaattgaaa--taaattcACGGTCTTT--GCTCATGCGCCCTCCacgtatgtatgtatgtacgcGTAACAAATCAGGCGTGTTTCTC-----------AGGAAGTGGGGACCTTTCTACGGAAATG
i caeJap4.Scaffold18213 I 851 I 808

a score=4208.000000
s ce10.chrX              2458296 72 + 17718866 TAGGCTTAGTTT---------CCAACAT-------TC--TCCAGCTCTGCCTTCTCCGTGTTTTAAATTGGAAATTTTGAATTCCAATTT
s cb4.chrX              17206731 54 - 21540570 ---------------------------TGAGCG--TT--TTCGACAC-----TCCCACGATTTTGaattagaatttctaaattccaattt
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15    56667 79 -  1794024 ggTCCGCTCTAA-----AATTGTATCGTGAGCTGCTT--CCCGACGC----GTCTTGCacatttaatttaaaatttctgaattttaattG
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    455367 71 -   484378 gcCTGCTCGTCTCTCTGAATAGTAGCAT-----------TCCGACTC--------CAAAcatttaaattgaaatttttgaattccaattt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3196581 79 -  4147112 GGACCTTTGTAT---TGAAGAGTTGCATGAGCAGTTTGCTTCAGCCC--------GAAACatttaaattgaaatttttgaattccaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   192182 808 +   720316 I

a score=-4507.000000
s ce10.chrX              2458368 25 + 17718866 TGCTCACCCACAAGAGGA--------GTCAAAG
s caeRem4.Crem_Contig15    56753 19 -  1794024 GGATGACCAGGG--------------TTGGGAG
i caeRem4.Crem_Contig15 I 7 I 1
s caeSp111.Scaffold582    455438 13 -   484378 ------ctaTCT--------------TTCAACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3196660 27 -  4147112 ------CTATTTCGAAGGTTTTCCCGTCTTAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   192182 808 +   720316 I
e cb4.chrX              17206785 29 - 21540570 I

a score=18798.000000
s ce10.chrX              2458393 113 + 17718866 CTCCGAAATGGAAATGAGATCCGTTTT----GAATGTCACATTAAAA--TTTTT------CTTCCGTTTTTCTTTCGGAATGGAATGGCTCGCAT------TTATGAGAAATGCCTAAGTAAATGTGCTTC
s cb4.chrX              17206814 106 - 21540570 CTTAGAAATTG---------CTGGtct----gaatatc------aaaaatgtttcgagggcttcctttttt------aaataaaaaggGATATTCCACATTTTATGAGGAATACCAAAGTGAATGTGCATC
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig15    56773 116 -  1794024 TTTTGATGCCG---------ATGCCTTTTTGGAATGtcacattaaaaaatgttt------cttcctTTCTTTATCCGGAATAGAATGGGCCCATCCGCTTTTTATGAGAAATGACAAAGTAAATGTGCATC
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    455451  95 -   484378 -CTCGA----G---------CCGTTTT----AAATGTCACATTaaaattttgtc------ttt--tttttcag----aagtgaaATGGGCTTTTC------TTATGAGAGATCCCTAAGTAAATGTGAATC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3196687 100 -  4147112 -CTTCA----G---------CCAATTC----AAATgtcacattaaaaattttct------tttcctctttctgtGTCATGTGAAATGAGCCTTT-------TTATGTGTGATACGTGAGTCAATGTGCATC
i caePb3.Scfld02_0      C 0 I 600
e caeJap4.Scaffold18213   192182 808 +   720316 I

a score=-1058.000000
s ce10.chrX              2458506 8 + 17718866 --CATATTCT
s cb4.chrX              17206920 8 - 21540570 TTGGGACA--
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15    56889 8 -  1794024 TAGATACT--
i caeRem4.Crem_Contig15 C 0 I 589
s caeSp111.Scaffold582    455546 8 -   484378 TCGAGACT--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I

a score=-18584.000000
s ce10.chrX              2458514 440 + 17718866 --TACAGAACAAACCGCTGAAGCTCGTTAGGTATATTCTTGATAGT--AATGGCATCAGATTACAAATCCAATCTTATGAATATGGATTGCTCTTCATAAAACTATTCACATTTTTTT-------GCTCtgaaggcagagtagtggaaaaattgtttaaacccac--ttctatggtgctaaaatgccaaaatatcatagtaaaacttttcaaaaaaatttatatatatattttttgaCAGTATTGATGTTTAAATGAAATTTAGGAGGGG----AAGGTTATAT----AACTATTATAAAACAGCAAAATTGCCTCAGC--------TTCAGACCGATTCAGTTTAGAGGAGAGGAAAAGAAAGCAGTTTTAACTC-----------------------TTTGTTGCAATATTTGAAATACGTTTTTTACTGCTAGGATAATAAGAAACGATA----TTTCAAAAAGCAATCAATTTTTGAGTTTTTAGAAAACAA
s cb4.chrX              17206937 290 - 21540570 --TATAGGAtaa-----caaa----------aat-------agaattggATGGAAT-GAATTATAAATTCAGTTCCAGTAACGT------------ATTAGAGCATTAAAATTGGTAT-------TTTTAGAATATAGA-------------CACTCA---------ATTGGTAATACGAAACTGGAAAAGTCC--TATAAAATGTT------AGAATATCAA-----ATCCCTAAAACatccggattttttgaaatattctggGAGGGGTTTGGAAACGAagttcagaacttttgaaactcg--aaaattctagaaaa--------ttcagaaattct--------------agaaaa--------------------------------------------------------------------------------------------------ttcta--gaaaattcagaaattcagaaattcagaaa---
i cb4.chrX              I 9 C 0
s caeSp111.Scaffold582    455554 434 -   484378 GATATAGCAAGA-----TGAA--TTGTATTGAATTCTATTAAAAATTAGATGCAA--AATGCAGAAATTTATTTCTATCCGGGg------------actagtttttttgaatttttatacggatgtttgaaaatctagaat---------ACTACTGAAAACCAAAGATTAGtggagagaaaacgaaaacttaC-GTagggaaattc------aaaattcaga-----at---gaaatcGAGCGAAT------AATAATTACGTGTGGGGGGCCATGACCATATGCTCAACTATTGCTATT----ATGATTCACTAAAGTGTGTCTTTTCATAAATATTTCGTtc------ggagaaaagagaagggcaccaccaccaccaaaGAGCATCACCTCGACTTTTGTTGCAATATTTGATGTATG-TTTCAACCGCTAGGATTAGAGGTaatggtttttcttctatggaaaaataggagtctcagttttcaaaacaaaa
i caeSp111.Scaffold582  C 0 I 119
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I
e caeRem4.Crem_Contig15    56897 589 -  1794024 I

a score=-1082.000000
s ce10.chrX              2458954 109 + 17718866 CGGGTTTTTGATTTTTTTTTTTTGCAAATCTAAATTAGTCACATAAAATTTACCGTGGGCAACATTTTCAAAAGTTTGTGTCACTGAAAAATACCTAAAAT--AACAttca
s cb4.chrX              17207227  60 - 21540570 --------------------ttcagaaattcaga------------aattca------gaaa----ttcagaaattc---------agaaattcagaaattcagaaattca
i cb4.chrX              C 0 I 37
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I
e caeSp111.Scaffold582    455988 119 -   484378 I
e caeRem4.Crem_Contig15    56897 589 -  1794024 I

a score=0.000000
s ce10.chrX              2459063 68 + 17718866 aggtggagaagcgccagtggagcatttattaaacatgaatatggtaccacaacgaccaactattatag
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I
e cb4.chrX              17207287 37 - 21540570 I
e caeSp111.Scaffold582    455988 119 -   484378 I
e caeRem4.Crem_Contig15    56897 589 -  1794024 I

a score=-1042.000000
s ce10.chrX              2459131 420 + 17718866 ttgaaaatttaaaaaaatttttttgaaaagtttagtataaattttagaaaataggactaaaactcagttattgcCACTGTTTGGAAGTCACCGATAGAAAAAAAAGTTTACTTCAAATGGCCTATTTGTGTTTCGAATATTAATA--TTCATACACTGTAGGGGTACAGTGTTATGGTTTTTTTTATgtggcaaaaactc--aataattgccattttttg-actgtcaatgaaaactttt----caaatttttttttgaaagtttactatgatatttggtcactttgaccccatacatagaagtggtttttaGAGAGTGAGCAATTTTTTTAGTTTTTGAAAATCCAAATTATAAACTAAGGATCAACCGCTTGACAAAAATCTTGCTAAGTGACATTTTAGTCTTGCAAGTTCAGACAAAACCAGC------GA
s cb4.chrX              17207324 321 - 21540570 tcagaaattcagaaa-------ttcagaaattcag----aaattcagaaattcgga----aattcaggaattcagaatttcagaaattca-------------------------------------gaatttcagaaattaagaaattcagaaatt-caaagattca----------ttttgaaatttcccgaaaaCACGAAATAAGTAACATTTCGTACATTTTCAATGGTCAGGATTAGAACaaatgactttttgaaaa---accataGTAAGCA-----TTTGAAACTATA-----------------GAAAGTGA-----------AATCTTGAACGATAAAAGT----AACCACAGtagaacaatttgaaaaaaa-----------aagactgttGCCGCCAAAGATCAGCCAAGATTAGCTGTGAAGA
i cb4.chrX              I 37 C 0
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I
e caeSp111.Scaffold582    455988 119 -   484378 I
e caeRem4.Crem_Contig15    56897 589 -  1794024 I

a score=1210.000000
s ce10.chrX              2459551 9 + 17718866 ACTTGACGA
s cb4.chrX              17207645 9 - 21540570 ACCTACCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    57486 9 -  1794024 ACTTTGCGA
i caeRem4.Crem_Contig15 I 589 C 0
e caePb3.Scfld02_0       3196787 600 -  4147112 I
e caeJap4.Scaffold18213   192182 808 +   720316 I
e caeSp111.Scaffold582    455988 119 -   484378 I

a score=24407.000000
s ce10.chrX              2459560  96 + 17718866 CCCCCGC----ACTTGAAACTGTCAAAAGTCAAAAACGTCAAACAA----------------GAAAACGATTTTGGTAGC-----ATCATTTGTTGATTCTCATTCTAAACCCCGCACATA
s cb4.chrX              17207654 104 - 21540570 CCCCCGCCCGAACTTaaaact-------gtcagaaacgtcaaacagaaaaaagaaagagacgaaaaaaaaatttggga------ccTTGTTTGTTGATTCT-GCCTAAATCCTTCTAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    57495  89 -  1794024 CCCCCGC----ACTTGAAACT-------GTCAGAAATGTCaaata-----------------agaaaacattttgGTAGC---GCTTCTTTTGTTGATTCT-ATTCTGCTCTCCATACACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    456107  87 -   484378 CCCCCGC----ACTTGAAACT-------GTCAAAAACGTCAAATagca--------------aaaacgtttttgggTAGC-----TTCTATTGTTGATTCT-ATAC---TCCCACCCAATG
i caeSp111.Scaffold582  I 119 C 0
s caePb3.Scfld02_0       3197387  89 -  4147112 CCCCCGC----ACTTGAAACT-------GTCAGAAACGTCAAATAGCA--------------AAAAGCGATTTTGGTAGCTGGCTTTCTTTTGTTGATTCT-ACA------CAACCTCACA
i caePb3.Scfld02_0      I 600 C 0
e caeJap4.Scaffold18213   192182 808 +   720316 I

a score=35797.000000
s ce10.chrX              2459656 87 + 17718866 AATCCTTTTGCCCTTCTTA------CAACCATTCCTTGTTTCTTACATCATCTGCCTGG-----------------------CATCTGTCGCACCATTTAAGCACAGAACTTGGGA
s cb4.chrX              17207758 89 - 21540570 ---CCTTTTGTTTTA-CTA------CAACCATTCCGTT----TAACGTCATCTGCTCTTTTTCCCACACA----------ACCAATTTTGGGA---TTCAAATGCTAAACTTGGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    57584 86 -  1794024 AATCTTTTTGCCCTC-TTC------TAACCATTCCGTTATTCTCACATCATCTGCCTGTCTT----CATT----------GCCACT------A---TTCGGACGCTAAACTTGGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    456194 98 -   484378 AATCTTTTTGCCCTT-TTGGGCTTCCAACCATTCCGTTTTTCTCACATCATCTGCTTGC-------CATA----------AGCATCTGTGGCACTTTTCGGTCGCTAAACTTGGGA
i caeSp111.Scaffold582  C 0 N 0
s caePb3.Scfld02_0       3197476 91 -  4147112 AATC-TGTTGCCCTT-TTA------CAACCATTCCGTTTTTCTCACATCATCTGCTTGC-------CATA----------AGCATCTGTGGCACTTTTGGGACGCTAAACTTGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   192990 91 +   720316 AAGCTCTCTGCCCTT-T--------CAACCATTCCA-----CTCATATGCTCTGC-----------CATAGTAAGCATTTAGCATCTGTCTTTCCATTTAGACACTAAACTTGGGA
i caeJap4.Scaffold18213 I 808 C 0

a score=47479.000000
s ce10.chrX              2459743  98 + 17718866 TTAGACT-ATATAAACATTAGGCACAAATACATAA---CCACTTACTCTTAAGCTTTTTCACTTGATGGGCGCGGGA-------------AAG----------------GGGGCCAAGAGTAGTTAGTGGA
s cb4.chrX              17207847  99 - 21540570 TTAAGGACACATAAACATTAGGCACAAACACATACTAACCACTTACTCTTAAGCTTTTTCTCTTGATGGGTCGGGGA--------------------------------GCGACCCCAAGTAGTTAGTggg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    57670 127 -  1794024 TTAAGCG-ACATAAACATTAGGCACAAACACATAC---CCACTTACTCTTAAGCTTTTTCACTTGATGGGCGCGGGAaagaaaacgggaaaagaAAGTGGAAGGGAGGGGGGACCCCAAGTAGTTAGTGGG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3197567 109 -  4147112 TTAGGCC-ACATAAACATTAGGCACAAACACATAC---CCACTTACTCTTAAGCTTTTTGACTTGATGGGCGCGGGA--AAGGACGAGAAAAG----------------GGGACCCCAAGTAGTTAgtgga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   193081  78 +   720316 TTAGGCC-ATATAAACATTAAGCACAAACACATAA---CCACTTACTCT-----------AGTTGATGGGCGCGGAA-------------AAG----------------GAG---------AAGGGGTGGA
i caeJap4.Scaffold18213 C 0 C 0

a score=232230.000000
s ce10.chrX              2459841 486 + 17718866  
s cb4.chrX              17207946 462 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    57797 450 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     81348 467 +   484378  
i caeSp111.Scaffold582  N 0 C 0
s caePb3.Scfld02_0       3197676 459 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   193159 430 +   720316  
i caeJap4.Scaffold18213 C 0 I 180

a score=2000.000000
s ce10.chrX              2460327 2 + 17718866 GG
s cb4.chrX              17208408 2 - 21540570 GG
i cb4.chrX              C 0 I 963
s caeRem4.Crem_Contig15    58247 2 -  1794024 GG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     81815 2 +   484378 GG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3198135 2 -  4147112 GG
i caePb3.Scfld02_0      C 0 I 778
e caeJap4.Scaffold18213   193589 180 +   720316 I

a score=584.000000
s ce10.chrX              2460329 3 + 17718866 CTA
s caeRem4.Crem_Contig15    58249 3 -  1794024 CTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     81817 3 +   484378 TTA
i caeSp111.Scaffold582  C 0 I 6
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I
e cb4.chrX              17208410 963 - 21540570 I

a score=11.000000
s ce10.chrX              2460332 7 + 17718866 TGATATA
s caeRem4.Crem_Contig15    58252 7 -  1794024 GCAGATA
i caeRem4.Crem_Contig15 C 0 I 134
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I
e cb4.chrX              17208410 963 - 21540570 I
e caeSp111.Scaffold582     81820 6 +   484378 I

a score=0.000000
s ce10.chrX              2460339 879 + 17718866  
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I
e cb4.chrX              17208410 963 - 21540570 I
e caeSp111.Scaffold582     81820   6 +   484378 I
e caeRem4.Crem_Contig15    58259 134 -  1794024 I

a score=143.000000
s ce10.chrX              2461218 68 + 17718866 CCATTTTTTTTTGTTAAAAAAACAAGTCCAGA---------AAAAACAATGTGAAATATTTCAGGTGGACAACCTCA
s caeSp111.Scaffold582     81826 75 +   484378 CTATacctttttctgaatgaaaatcgTTCAGATTGAGATtcgaaaataaca--aattatTTCGAACAACGAAGAAAA
i caeSp111.Scaffold582  I 6 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I
e cb4.chrX              17208410 963 - 21540570 I
e caeRem4.Crem_Contig15    58259 134 -  1794024 I

a score=3168.000000
s ce10.chrX              2461286 35 + 17718866 CTACTATATTCTTTAGTA-TGCCTATTTTCTTTAGA
s caeRem4.Crem_Contig15    58393 35 -  1794024 CTACTACATTTCTCAGCA-TGTCTATTTTGTTTGTA
i caeRem4.Crem_Contig15 I 134 C 0
s caeSp111.Scaffold582     81901 32 +   484378 CTATAAGATTTCTCAGTAGGGgctattttctt----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I
e cb4.chrX              17208410 963 - 21540570 I

a score=10317.000000
s ce10.chrX              2461321 31 + 17718866 CCAACCCAATTGTTATGAGCCACCCA---CCAAT--
s cb4.chrX              17209373 36 - 21540570 CCAACTCAATTGTTATGAGCCACCCAACCCCAAAAT
i cb4.chrX              I 963 C 0
s caeRem4.Crem_Contig15    58428 26 -  1794024 -----CCAATTGTTATGAGCCACCCA---CCAAA--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     81933 30 +   484378 -caaaccgATTGTTATGAGCCACCCA---CCAAT--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193589 180 +   720316 I

a score=43494.000000
s ce10.chrX              2461352 76 + 17718866 GCACCGGATAGAG-----------GTTGTC------TTGTTACAT----GAAGAATGAAAACGCAATTCCGCGGAAGAAAA--AACATTTCC-GCTGACC
s cb4.chrX              17209409 96 - 21540570 GCACCGGATAAAGATTGGAGACACGTTGTCGTTGGGTTGTAACAT----GAAGAATGAAAACGCAAATCAGCGGAAGAAACACAACGTTTCCTGCTGACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    58454 74 -  1794024 GCACCGGATAGAG-----------GTTGTC------TTGTTACGT----GAAGAATGAAAACGCAATTCCgcggaaaaa----aacatttcc-gcTGACC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     81963 75 +   484378 GCACCGGATAGAG-----------GTTGTC------TTGTTAcat----gaagaatgaaaacgCAATTCCGCGGaaaaaa---aGCATTTCC-TCTATCT
i caeSp111.Scaffold582  C 0 I 113
s caeJap4.Scaffold18213   193769 76 +   720316 GCACCGGATAGCG-----------GTTGTC------TTGCTACATACACGAAgaataaaaatgcaatgccgtggaaa------aacatttcc-gctAGCC
i caeJap4.Scaffold18213 I 180 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I

a score=600.000000
s ce10.chrX              2461428 1 + 17718866 C
s cb4.chrX              17209505 1 - 21540570 C
i cb4.chrX              C 0 I 211
s caeRem4.Crem_Contig15    58528 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   193845 1 +   720316 C
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeSp111.Scaffold582     82038 113 +   484378 I

a score=-1022.000000
s ce10.chrX              2461429 47 + 17718866 AGCGACGCTTGCATCTTCG-----AATTGCAAAAATTATAATTCTCATCTAC
s caeRem4.Crem_Contig15    58529 31 -  1794024 -----Tactcttattttca-----aa-----------ataactgttataaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   193846 44 +   720316 --------TATTACCTACGCAAAAAATTCTGGATGTTATTATTTCCATCCAC
i caeJap4.Scaffold18213 C 0 I 2297
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e cb4.chrX              17209506 211 - 21540570 I
e caeSp111.Scaffold582     82038 113 +   484378 I

a score=-911.000000
s ce10.chrX              2461476 49 + 17718866 ACAC--------ACACACACACTTACAGATGATTGTGG-------AGTGAGTCCCCAAGGATGG---------------
s caeRem4.Crem_Contig15    58560 78 -  1794024 acactttttgagaagTGTGTGACTACAAACTGTTCTGGCGAGCTCGGTGCAT-CCCAAGAGTGGAATTAAGATTAACAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17209506 211 - 21540570 I
e caeSp111.Scaffold582     82038 113 +   484378 I

a score=9619.000000
s ce10.chrX              2461525 94 + 17718866 TGAAAGGTATGCAAA-TTTGCGT-------TTATTTCACACAGATACTTTCCAATTCGTTTTCTCTTTTACACACCTCATTTACATGACTGGAAATTGAGAA
s caeRem4.Crem_Contig15    58638 85 -  1794024 AAAAAGGTATGCAAATTTTGAATGCGCGG-TTA-TTCACACGCACACTTTTCCACT---------------ATACTTCATTTACATgactggaaattggaaa
i caeRem4.Crem_Contig15 C 0 I 872
s caeSp111.Scaffold582     82151 97 +   484378 AAAAAGGTATGCAAA-TAAGAATAAGAGGAGTA-TTCACATGGGCACTTTAGCAAT---TTCATCCCTTACACACCTCATTTACATGACTGGAATTTGAGAA
i caeSp111.Scaffold582  I 113 I 175
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17209506 211 - 21540570 I

a score=0.000000
s ce10.chrX              2461619 2184 + 17718866  
e caePb3.Scfld02_0       3198137  778 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17209506  211 - 21540570 I
e caeSp111.Scaffold582     82248  175 +   484378 I
e caeRem4.Crem_Contig15    58723  872 -  1794024 I

a score=284.000000
s ce10.chrX              2463803 72 + 17718866 AGTAGTGttattattatttaaaatttttGTACGAAATTTTGAATTTTTCGGAGAAATTATACGCAGAAGGTT
s cb4.chrX              17209717 56 - 21540570 AATagtgtaa-----aattgaaattttgg---aaaattttaa--ccTTCGGGGGcgt------caaaaatga
i cb4.chrX              I 211 C 0
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeSp111.Scaffold582     82248 175 +   484378 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=1456.000000
s ce10.chrX              2463875 50 + 17718866 --AGAATAAGATAATGAAAAATTTGTGG---ATAAAATTCAAG-----GATATAGCGTGC
s cb4.chrX              17209773 59 - 21540570 agaaagagagctaattgaaa-aatgagactGACCAGAAGGGAATAACGAATATTGCGTGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     82423 51 +   484378 -aaaataagaataattgaaagaatGTGA---ACCAAAACTAGA-----AATATTGCGTGT
i caeSp111.Scaffold582  I 175 I 8
e caePb3.Scfld02_0       3198137 778 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=6670.000000
s ce10.chrX              2463925 145 + 17718866 -----GTTAT-----GCAGTTAT-----TTTTCTCTAACTCTATTCCAGCAAT-TCCATCTTGAAAATTGACATGTTTTTGGTGTG---------------------TTCCACCGCTTGAAG--------GGACCCATCAACACTACACAAGCCGACCGC---------------CAACATT----TTCAATTAATTCCGCGCTTTT----------CT
s cb4.chrX              17209832 164 - 21540570 GTGTAGTTATTTTGTACATTTGCCTGGCGCCCTCCACGTCTCCAACTAGTACTAGCCatctc-aaaattgacatgTTTTTCGGGGG-----GCCCAAGGATTACAACTTCCGCTGCTCTCAG----------------------------AAATAGCTCC-----------CCATCAACACTCTTCTTCAATtatctccaaattttt--------tt--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     82482 203 +   484378 -----GTTATTTTGATCATTTCCGTGTGTCTTTTCCTTTCCGTTCCTC-TGCT-TCCATCTC-AAAATTGACATGTTTTTGGTGTGTTCTAGCCCAGGGATTACAAATTCCGTTGCTCACCGCTTGAGGAGCGCCCTTCAACACTACATAAGCTAACCCTTTCTCGTAGAACcatcaacatt----ttcaattaattccAATACTCCGgtcttct----
i caeSp111.Scaffold582  I 8 I 19
s caePb3.Scfld02_0       3198915 163 -  4147112 -----GTTAT----AGCGTTACT-----TCTCTTCCTACCCCTTCCT----------GTCTC-AAAATTGACATGTTTTTGGTGTGTTCTAGCCTAAGTATTACAAATTCCTCTGCTACCAACTTG-GGGGCACCCATAAACAACATATAGGCTGGCCCT--------------CCAACACt----tccaattaatttttcaatttc------------
i caePb3.Scfld02_0      I 778 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=-2867.000000
s ce10.chrX              2464070 30 + 17718866 GACAAGCCCTGTTGTGACCCTCAATGCAAG
s cb4.chrX              17209996 13 - 21540570 ---aaggCTTATGGTT--------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3199078 14 -  4147112 ----aattttctctccaa------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeSp111.Scaffold582     82685 19 +   484378 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=4767.000000
s ce10.chrX              2464100 22 + 17718866 CCATGGATTATTCATAATCTTC
s cb4.chrX              17210009 15 - 21540570 -------TTTGTTAAAATCctc
i cb4.chrX              C 0 I 24
s caeSp111.Scaffold582     82704 22 +   484378 CCATGGATTATTCATAATCAAT
i caeSp111.Scaffold582  I 19 C 0
s caePb3.Scfld02_0       3199092 21 -  4147112 -CATGGATTATTCATAAtcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=1112.000000
s ce10.chrX              2464122 22 + 17718866 --AGAATATGTGGTTTTTCTGACC-
s caeSp111.Scaffold582     82726 22 +   484378 --AGAATATTCGGTTTTTGTAGGC-
i caeSp111.Scaffold582  C 0 I 35
s caePb3.Scfld02_0       3199113 25 -  4147112 gcaaatttttcagttttcgtagGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17210024 24 - 21540570 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=-665.000000
s ce10.chrX              2464144 26 + 17718866 GCGGAGTGGACT-----------------TCTTTGATTCATAG
s caePb3.Scfld02_0       3199138 37 -  4147112 TCGAAGTAAAGTAGGAAAGATGCCATGTGTCTTCAAT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17210024 24 - 21540570 I
e caeSp111.Scaffold582     82748 35 +   484378 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=0.000000
s ce10.chrX              2464170 1 + 17718866 A
e caePb3.Scfld02_0       3199175 0 -  4147112 C
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17210024 24 - 21540570 I
e caeSp111.Scaffold582     82748 35 +   484378 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=273.000000
s ce10.chrX              2464171 1 + 17718866 T
s cb4.chrX              17210048 1 - 21540570 T
i cb4.chrX              I 24 C 0
s caeSp111.Scaffold582     82783 1 +   484378 T
i caeSp111.Scaffold582  I 35 C 0
e caePb3.Scfld02_0       3199175 0 -  4147112 C
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeRem4.Crem_Contig15    58723 872 -  1794024 I

a score=44587.000000
s ce10.chrX              2464172 78 + 17718866 ATGTTGCGCTTAATTTTCTTTGACACAACGTGTAATTGCATCCATGTGACAAGAGTGATGTGCTGCGCTATTTTGCTC
s cb4.chrX              17210049 66 - 21540570 GTGTTC-AGTTGATTCCTTCTGACACAAATTGTAATTGCATCCATCTGACAAGAGTGATGTGCTCCG-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    59595 78 -  1794024 ATGTTTGAGTTAATTCTCTTCGACACTAATCGTAATTGCATCCATCTGACAAGGGTGATGTGCTCcgctatttttctt
i caeRem4.Crem_Contig15 I 872 I 16
s caeSp111.Scaffold582     82784 78 +   484378 ATGTTAGTCTTAATTCTCCTTGACACTAATCGTAATTGCATCCATCTGACAAGAGTGATGTGCACCGATGTTTTGCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3199175 76 -  4147112 --GTTAGACTTAATTCTCCTTGACACTAATCGTAATTGCATCCATCTGACAAGAGTGATGTGCTCCTCTATTTTTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I

a score=-3540.000000
s ce10.chrX              2464250 15 + 17718866 --------GATTCTCTGAAAACT
s cb4.chrX              17210115  9 - 21540570 CGCCGAGAG--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     82862  1 +   484378 --------G--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3199251 12 -  4147112 --------GATTCACACACA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeRem4.Crem_Contig15    59673 16 -  1794024 I

a score=32172.000000
s ce10.chrX              2464265 88 + 17718866 CTAAGAAAATTGCCACCAATTGCGCCGCAGGGCAAGAATTGGGAATTAGTGCTACTTTGTGAGCAAGTGTCTAGCAGGGGAAAAAAAA
s cb4.chrX              17210124 85 - 21540570 --ACAAAAATTGCCACCGATTGTGCCTCGGGGCAAGAATAAGGAATTAGGGCTACTTTTGGCCAAGTTGTCGGGAAACACAATGTCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    59689 87 -  1794024 CGATAAAAATTGCCACCGATTGTGCCGCAGGGCAGGAATGTGGAATTAGTGCTACTTTGCGTTGTCTCGATGAGCAAGAAATAGTAA-
i caeRem4.Crem_Contig15 I 16 C 0
s caeSp111.Scaffold582     82863 87 +   484378 TGACTAAAATTGCCACCGATTGTGCCTTAGGGcaagaatataaaattatTGCTACTTTGCGCCAAAAGTCTAAAAAAGGAAGACAAA-
i caeSp111.Scaffold582  C 0 I 328
s caePb3.Scfld02_0       3199263 85 -  4147112 CTACGAAAATTGCCACCGATTGTGCCTCGGGGCAGGAATACAAAATTATGACTACTTTTTTGTCAATgtctcagaaaaacaaaaa---
i caePb3.Scfld02_0      C 0 I 540
e caeJap4.Scaffold18213   193890 2297 +   720316 I

a score=3887.000000
s ce10.chrX              2464353 17 + 17718866 GAAGATTTGGGGTAATT
s cb4.chrX              17210209 17 - 21540570 GGAGATGTGAGGTAATT
i cb4.chrX              C 0 I 852
s caeRem4.Crem_Contig15    59776 17 -  1794024 GAAGATGTGAGGTAATT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3199348 540 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e caeSp111.Scaffold582     82950 328 +   484378 I

a score=537.000000
s ce10.chrX              2464370 22 + 17718866 CAATTCAAGATTAAAAACCAAA
s caeRem4.Crem_Contig15    59793 22 -  1794024 AGAGCaaagaatcaaaaacaaa
i caeRem4.Crem_Contig15 C 0 I 316
e caePb3.Scfld02_0       3199348 540 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17210226 852 - 21540570 I
e caeSp111.Scaffold582     82950 328 +   484378 I

a score=0.000000
s ce10.chrX              2464392 1522 + 17718866  
e caePb3.Scfld02_0       3199348  540 -  4147112 I
e caeJap4.Scaffold18213   193890 2297 +   720316 I
e cb4.chrX              17210226  852 - 21540570 I
e caeSp111.Scaffold582     82950  328 +   484378 I
e caeRem4.Crem_Contig15    59815  316 -  1794024 I

a score=931.000000
s ce10.chrX              2465914 178 + 17718866 TACTGAAGAAACATTCCAATAGTGATAAAAATGAAAGGATACTGTATTAAAATTTAAAAAATCGAAAAATTATCAAAAAAGTTTGGAGCGCGCGTTAACTCCAATTAAAAAAAACCAAAAACATTCCATAACTTAAAACATTTTCTAAATACAAAATATAAA-AATGTAGATCGTCACA
s caeJap4.Scaffold18213   196187 146 +   720316 TACTtaaaaaac----taatagtaaaagaaat----------------aatatgcgaaaaa----aagatattcataaaaattttcaattcacTTGGTCTTTAAT--------ACCCAAATCATTAGACAACCATGAGAAATTCCCCATAATAAACTAAAGACAACACAGATCACGAC-
i caeJap4.Scaffold18213 I 2297 C 0
e caePb3.Scfld02_0       3199348 540 -  4147112 I
e cb4.chrX              17210226 852 - 21540570 I
e caeSp111.Scaffold582     82950 328 +   484378 I
e caeRem4.Crem_Contig15    59815 316 -  1794024 I

a score=0.000000
s ce10.chrX              2466092 3 + 17718866 TTT
e caePb3.Scfld02_0       3199348 540 -  4147112 I
e caeJap4.Scaffold18213   196333 0 +   720316 C
e cb4.chrX              17210226 852 - 21540570 I
e caeSp111.Scaffold582     82950 328 +   484378 I
e caeRem4.Crem_Contig15    59815 316 -  1794024 I

a score=2543.000000
s ce10.chrX              2466095 12 + 17718866 TTTTCTAGAAAA
s cb4.chrX              17211078 12 - 21540570 ttttcgagcaaA
i cb4.chrX              I 852 I 19
s caePb3.Scfld02_0       3199888 12 -  4147112 ttttcaaaaaaa
i caePb3.Scfld02_0      I 540 C 0
s caeJap4.Scaffold18213   196333  5 +   720316 -------GAAAA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     82950 328 +   484378 I
e caeRem4.Crem_Contig15    59815 316 -  1794024 I

a score=1000.000000
s ce10.chrX              2466107 1 + 17718866 G
s cb4.chrX              17211109 1 - 21540570 G
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig15    60131 1 -  1794024 G
i caeRem4.Crem_Contig15 I 316 C 0
s caePb3.Scfld02_0       3199900 1 -  4147112 g
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   196338 1 +   720316 G
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     82950 328 +   484378 I

a score=54338.000000
s ce10.chrX              2466108 176 + 17718866 TATCGTATCCGAAACAAGTGAATGGGAAGTAAAACTTATGCGTTTTCAATTTTCACCAAGAGCTTCCCGAACTGCTTAAGA------AGACAGGCACTTGAGAATAATTGGCTGT----------TAAAGTAGGAAAAA------------------------------GTACTTACCATCCTCGGGACTTCGTAGAACATAAGCGCCTGCTCAGTTATCA-T
s cb4.chrX              17211110 166 - 21540570 TATCGTATACGAAACAAGTGGCTGTG-A--GAAACTTATGC-TCTCGAGTTTTTACCAAAA------CAAAGTGCTCAAGA------AAACGCCCACTTGAGGATAATTGGCTGTGTG-CTATG-CTATGCC--------------------------------------TACTTACCATATTTGAGACGTCAAAGTAGACAAGCCCTCGTTCAGATATCA-T
i cb4.chrX              C 0 I 415
s caeRem4.Crem_Contig15    60132 161 -  1794024 TATCGTATACAAAGTAAGTGG---------ACAACTTATGC-TCTTGAGTTTTTACCAAAA------CGAAGGGCTCTAGT------AAG---ACACTTGAGAATAATAGGATGT-----TACG-CTGAACTAGAAAAA------------------------------GTACTTACCATATTCGAGACATCGAAGTAGATGAAGTTTTGTTCCGTTATCA-T
i caeRem4.Crem_Contig15 C 0 I 519
s caeSp111.Scaffold582     83278 154 +   484378 TATCGTATTCAAAACGAGCGGATGTGca--aaaacttat---tttgaagttt-------aa------CCAAGTGCTCAAAA------AAG---GCACTTGAGAATAATTGGCTG-----------CTAAACTAGAAGAA------------------------------GCACTTACCATTCTTGAGACGTCGTAGAATACGAGACCTTGTTCCGCTATCA-T
i caeSp111.Scaffold582  I 328 C 0
s caePb3.Scfld02_0       3199901 164 -  4147112 catcgTATTCAGAACAAGTGGTTTGG----GAAGCTTAT---TCtcaagttttt-ccaaaa------cgaaGTGCTC-AAA------AAG---GTACTTGAGAATAATTGGCTGG-----GACGCCTAAACTAGAAAAA------------------------------GTACTTACCATTCTTGAGGCATCGTAGTAGACGAGTCCGTTTTGAGCTATCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   196339 200 +   720316 AATCGAAAATAATTCTAATCAACTCG----GGAACTCAT------AAAACTTCAATGAAGA--------AAGTGCTTAAATCTAGACGGG---ACACTTGAGAATAATTGGTTCGATGATGCTG-AGAAACaagaagaaataaataaatgaaaaattgaaaaggatGATGCACTTACCTTTCGTGAAATGTTGAAGAACACAAGATCTTTCTTAGCTATCA-T
i caeJap4.Scaffold18213 C 0 I 658

a score=-26065.000000
s ce10.chrX              2466284 681 + 17718866  
s caeSp111.Scaffold582     83432 455 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3200065 433 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   196539 658 +   720316 I
e cb4.chrX              17211276 415 - 21540570 I
e caeRem4.Crem_Contig15    60293 519 -  1794024 I

a score=28279.000000
s ce10.chrX              2466965 181 + 17718866 AACGGAA-AAACAACAATTTTTA-TAAAA--------GAAGGttaaaaaaaacattattaaaattattaatatCATGGTAAGAAATAAAACGGCAAAAAATGCAAAATAATCATGGGAAGAAGAAAATGAGGAGTGAGAAAAAAAGAAAGTAAAA---AGCAAACATTCAAGACGCCATGACCTGAATCGCCAT
s caeRem4.Crem_Contig15    60812 146 -  1794024 AACggaacaaacaaaaaaattta-taagaggaatgaaaaaaatacacGACAGAATTATTAAGATTATTAAGATCAAGAAA---------------AAGGCAGCCAAGTAATCATGG-----------------------------GAAAGTGAAA---AGTAGATATTCAGTATTCAATGACCTGAATCGCCAT
i caeRem4.Crem_Contig15 I 519 C 0
s caeSp111.Scaffold582     83887 145 +   484378 -agtgaa-aaacaaaa--ttttattaaga-----gaaaaaaatggaagaaaacattATTAAGAGTATAAGAATCATGGAAATA-----------TAAGTCAGGAGATGGATCGTGa-----------------------------gaaagtaaaaaagaataaacatTCAGCAGTCGATGACCTGAATTGCCat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3200498 145 -  4147112 -AAcgaacaaacaaaattttttattaaga-----GAGAAAAGAACTCGAAAACATTATTAAGATTATTAAGATCATGGACATA-----------TAAGGCTGTAGAGTAATCATGG-----------------------------GAAAGTAAAA---AGCAAACATTCACTATTCAATGACCTGGATTGCCat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   196539 658 +   720316 I
e cb4.chrX              17211276 415 - 21540570 I

a score=20095.000000
s ce10.chrX              2467146 178 + 17718866 ---------AAA----------------AGAAAGAGCTCAATGAGATTCCGAATCTGATATTAATGAATTATAGTTTAGTTGAATGGGA-----AAATAGGAATAAGAGAGGAAAA-GTTAG-----AAAATGATATTTTAATAGAGGTACTTCAATCTGTTACGCAATTATTACTCTGAGA-----AAA-AAAAACTATTGAATCATTAATCGGTGAGA
s cb4.chrX              17211691 156 - 21540570 ---------AGA----------------GAAAAGAGTTCAGCAAACTTCCGAATCTAATATGAATGAATAATAATTGAAT-------GAATGAGATAGAGATATATATGCGGAAGC-TTCTCGCAT-aaaac--------aaaagggttgggagaaatt----------------tttcaaa-----aga-aaaaaatcatgaaaaattgaaaaacaaaa
i cb4.chrX              I 415 C 0
s caeRem4.Crem_Contig15    60958 147 -  1794024 ----------------------------AAAAAAGGTTCAGTACACTTCCGAATCTAATatgaataaataataattcaGT-------GA-----AAAGAGATAAAT----GGAAGC-Ttttgtc---aaaac--------aaaaaagaccaGCCAATTT----------------GCTTAGGAAGTCAAG-AAACAGCCATAAAATATTATTGAATGAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     84032 172 +   484378 gaaagaatgagaaagaaaaagaagagagagagagagttcaGCACACTTCCGAATCTAAtatgaataaataataattgaGT-------GA-----ACAT-AAGAAGCA---GGAAGCTTTTCCATGAACGAAT----------GCGAGCTGACTGATTTT----------------TATTAG------AGACGATAATGCGTGCGTTATCATTGAATGAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3200643 163 -  4147112 aaaagaaggaga--------------agaaggagagttCAGTACACTTCCGAATCTAAtatgaataaataataattgggt-------ga-----aaagaaaaaagca---ggaAGC-TTCCCATTTGCAAAT--------AAGAGAGCCAACTGATTTT----------------TATTAGG--TGTAGA-GAGAAAAACTGCATTATTATTGAATGAGa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   196539 658 +   720316 I

a score=105340.000000
s ce10.chrX              2467324 139 + 17718866 AGT-----TT----TTTTTTTTTAATT----------------T-TAGCACAAGGGAGTTATTGCTTGTGAGTCAGAGAAGAGCCCGATTTCAGTTATTCCAACTTGTCCAACATTCATCACTGTTGAGGTATTTTGCCATGCCACGATGTAGAACTGAAATAAA
s cb4.chrX              17211847 156 - 21540570 --------ctgaaaattgagcataaatcaagagagagagagagt-taGCACAGTGGAGTTATTGCTTGTGAATCCGTAAAAAGGCCGACTTCTGTTATCCCCACTTGGCCCACGTTCATCACTGCTGAGGTATTTTGCCATGCCACAatgtaaaactgaaaaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    61105 136 -  1794024 --------CC----ATTTaagttattt----------------t-cagcataGTGGAGTTATCGCTTGGGAATCCGTGAAAAGACCAACTTCCGTTATTCCAACTTGTCCGACATTCATTACTGCTGAGGTATTTTGCCATGCCACAAtgtaaaactgaaacaga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     84204 136 +   484378 --------CC----ATTTGAGCTAAGT----------------T-TAACACAGAGGAGTGATTGCTTGAGAATCGGTGAACAGTCCGACTTCCGTTATTCCAATTTGTCCGACGTTCATCACTGTTGAGGTATTTTGCCATGCCACAATGTAAAactagaaatga
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3200806 135 -  4147112 --------cc----atttgaatt-ttt----------------t-cagcacaGTGGGGTGATTGCTTGAGAGTCCGTAAATAGCCCGACTTCTGTAATTCCAACTTGTCCGACGTTCATCACTGTTGAGGTATTTTGCCATGCCACAAtataaaactgaaagaaa
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold18213   197197 145 +   720316 agtttttgtt----tttgagaccattt----------------tCTAGCACAGTGGGGATATTGCTTGAGAATCGGAGAATAAACCGATTTCCGAAAGACCAATTTGTCCAAAATTCACGACTGTTGAAGTGTTCTGCCAGGCTATGATGTAAAactaaattaga
i caeJap4.Scaffold18213 I 658 C 0

a score=422.000000
s ce10.chrX              2467463 1 + 17718866 A
s cb4.chrX              17212003 1 - 21540570 g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    61241 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     84341 1 +   484378 a
i caeSp111.Scaffold582  I 1 I 10
s caeJap4.Scaffold18213   197342 1 +   720316 a
i caeJap4.Scaffold18213 C 0 I 35
e caePb3.Scfld02_0       3200941 37 -  4147112 I

a score=-364.000000
s ce10.chrX              2467464 18 + 17718866 TTAAAATATTATGATTAG
s cb4.chrX              17212004 16 - 21540570 aC--AATATTATTATTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    61242  9 -  1794024 at---------tgactag
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3200941 37 -  4147112 I
e caeJap4.Scaffold18213   197343 35 +   720316 I
e caeSp111.Scaffold582     84342 10 +   484378 I

a score=394.000000
s ce10.chrX              2467482 19 + 17718866 AAAAGCGGAAAAAAAATTT
s caeRem4.Crem_Contig15    61251 19 -  1794024 aaataaaataatagaaTTT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3200941 37 -  4147112 I
e caeJap4.Scaffold18213   197343 35 +   720316 I
e cb4.chrX              17212020  0 - 21540570 C
e caeSp111.Scaffold582     84342 10 +   484378 I

a score=0.000000
s ce10.chrX              2467501 402 + 17718866 TATTCAGAAAATTTCAAGTCAAAAAAACTGTACGTCTTTTTTAAAAACTTCACATAAATTTCCTGCCatgtagcaaaatgtagcaaaatgtagcaaaTCCGtttaaaatatgaaaaacttatttatttattttttatCATACTGTCATCACTGCTTTTAACACTTTCAGTAAGTTTAGTTTTTGTCTAAAGAATTACCAACTTACCTAAAATTAGCATTAAGTATATCTAATCTTAAAACAATTCTCTGAAAAATTATTAGAAGTTGCAATACTATCATAGTTATAGGTGGAGTAACGCAAGTGGGAATTTTGTCAAAATACACTTGTAATACTCCAAAAGAAAATCATAAAAAACACTCCAAAATTTTTTTTAATACATGAATTTTATTGTTTAGTTATGA
e caePb3.Scfld02_0       3200941  37 -  4147112 I
e caeJap4.Scaffold18213   197343  35 +   720316 I
e cb4.chrX              17212020   0 - 21540570 C
e caeSp111.Scaffold582     84342  10 +   484378 I
e caeRem4.Crem_Contig15    61270   0 -  1794024 C

a score=191.000000
s ce10.chrX              2467903 2 + 17718866 CT
s caeSp111.Scaffold582     84352 2 +   484378 ct
i caeSp111.Scaffold582  I 10 C 0
e caePb3.Scfld02_0       3200941 37 -  4147112 I
e caeJap4.Scaffold18213   197343 35 +   720316 I
e cb4.chrX              17212020 0 - 21540570 C
e caeRem4.Crem_Contig15    61270 0 -  1794024 C

a score=-227.000000
s ce10.chrX              2467905 21 + 17718866 TTAACATATTTATTTTGTACA
s cb4.chrX              17212020 18 - 21540570 TTCCCCTATGTTTTTTGT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     84354 21 +   484378 tttaaaaacctTTCTAATATA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3200941 37 -  4147112 I
e caeJap4.Scaffold18213   197343 35 +   720316 I
e caeRem4.Crem_Contig15    61270  0 -  1794024 C

a score=252400.000000
s ce10.chrX              2467926 368 + 17718866 CTTACGGTAGTTAATTGTCCCGGTAACAGTACCACTTCCTTTGTCCACTCTCTTGCAAACGGCCTAATACTGTTTTCATATACATTCCAGAAGCACCTGAACCCGC-AAATCTAGTTTCA-TATGC------GATTTTTGACCTCTCTACTAACCTAGTTGCATAGCCATCTTCACAAACGGAGAGGTACAATCCTTTTGTTGAGAGAAATTTGCGGAAGCTTAGGTAGGCGCCCGGTGCGTCACTAATTGTGAACTCCGGCGCTTCCAAGACAAACCGATCTTCGCTCTTCGTTCGACTGAATCCCATAAAATTAGCTACCAAGAATGAAGAATCTGCA-----AAACGAATT---AATATTTTGATAG--------------------TAAAACTTATACAC
s cb4.chrX              17212038 354 - 21540570 CTTACCGTAGTTAATTCCCCGGGTAATAAGACAACTTCTTTCGTCCACTCTCTAGCAAATGGTTTCGCACTGTTTTCGTAGACATTCCAGAAGCAACTGAAGAAAA---Atccagttttg-aaatt------gaccTCT---CTCGAGACTAACCTAGTTGCAAAGCCGTCTTCACATACGGAAAGGTATAATCCTTTTGTTGAGAGAAACTTGCGGAAGCTTAGATAGGCGCCCGGTGCGTCGCTAATTGTGAATTCTGGTGCTTCGAGGACGTACCGATCTACGGTCTTCGCGCGGTTGTAGCCAAGGAAATTGGCAACCAGGAAGGGTTTATCTG-------AAATAA------TATATTGGG------------------------TACGATTCGTAAAC
i cb4.chrX              C 0 I 285
s caeRem4.Crem_Contig15    61270 356 -  1794024 CTTACGGTAGTTATTTCTCCTGGTAACAGGACAACTTCTTTTGTCCATTCTCTCGCAAATGGTTTTGCACTGTTTTCATATACATTCCAGAAGCATCTACAAAAAAGGTATCTAGTTTGGTCTGCC------GATTTCTGACCTGTGAACTAACCTAGTTGCAAAGCCATCTTCACAAACGGAAAGGTACAATCCTTTTGTTGAGAGAAATTTGCGGAAGCTTAGGTAGGCGCCCGGTGCGTCGCTAATTGTGAACTCCGGCGCTTCCAGGACAAACCGATCGGCTGTTTTTCCTCGGGAAAAGCCAACAAAATTAGCGACCAAGAAAGGTTTCTCTG-------AAACAG------TCAA-----------------------------CATGATTGAAGTAC
i caeRem4.Crem_Contig15 C 0 I 14
s caeSp111.Scaffold582     84375 370 +   484378 CTCACGGTAGTTAATTCTCCGGGTAATAACACTACTTCTTTTGTCCACTCTCTAGCAAACGGTTTGGCACTGTTTTCATAGACATTCCAAAAGCACCTACAAATAG-CTATCTAGTTTGGAAACGT------CAATCTTGACCTCCCGACTAACCTAGTTGCAAAGCCGTCTTCACAAACGGAAAGGTACAATCCTTTTGTCGAGAGAAATTTACGGAAGCTTAGGTAGGCGCCCGGTGCGTCGCTAATTGTGAATTCCGGTGCTTCCAAAACAAACCgatcttcagtttttcctcGGCTAAATCCAACAAAATTAGCAACCAGAAACGATGCATCTGGAACCGCGAATAA------GGTAATAGGAAAG--------------------AAAGTTCATTAAA-
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3200978 376 -  4147112 CTTACGGTAGTTAATTCCCCGGGTAATAACACCACTTCCTTTGTCCACTCCCTTGCGAAGGGTTTTGCACTGTTTTCATATACATTCCAAAAGCACCTACAAAAAG-ATATCTAGTTTGGAAACCCTTCCCGTAATTTTGACCTCCCGACTAACCTAGTTGCAAAGCCATCTTCACAAACGGAAAGGTACAATCCTTTTGTTGAGAGAAACTTGCGGAAGCTTAGATAGGCGCCTTGTGCGTCGCTAATTGTGAACTCCGGTGCTTCCAACACAAACCGATCTGCGGTTTTACCTCGGCTATACCCAAGGAAATTAGCGACAAGGAAAGCCgaatctgga-----gaaaaaatgtgtgatAATGGGaaa---------------------ccagttttttgaa-
i caePb3.Scfld02_0      I 37 I 7
s caeJap4.Scaffold18213   197378 383 +   720316 cttACAGTAGTCAACTGCCCAGGTAACAATACAACTTCCTTTGTCCATTTCTTGGCGAATGGCTCTGCACTGTTTTCGTAGACGTTCCAAAAACACCTGAAAATCAAATCACGACCTTATAAAAAC----AGAAAGCTT----------CAAACCTAGTTGCATAACCATCCTCGCAAACCGAAAGATACAATCCTTTTGTATACAAATACTTGCGGAAGCTGAGGTAGGCGCCCTGTGCGTCGGTAACCGTGAATTCAGGAGCTTCAAGGACAAATCGGTCTTCGACTTTATTTCTACGAAATCCTTGGAAGTTTGCCACTAGGAAATTtgaatctgaaaattaaaatca------aacaatttaaaaaaaatcaaacgaTACTGTTTTAAAAGTATAAAAA-
i caeJap4.Scaffold18213 I 35 C 0

a score=110346.000000
s ce10.chrX              2468294 211 + 17718866 TTACCTTTGGACGGTTCGGGAGACGCATGTATACCCGATAGCTTATTTGCCACATTCTTTTTAGCAGATGTGATTCTCCAACCAACTAAGTATCCTTCACCAGATGCTCCAGTCCCAGAACGTTTGTAATCACATGGTGCATTTTGTTGATCCATCAAGCATTGTAGGGATCTTCAGAATAATGAAACATTTATCAGTGA--------ATTTT--------TTTATA
s cb4.chrX              17212677 199 - 21540570 tcacctTTTGATGAATCCGGAGATGTGTGAATCCCGGTCAATTTATTGGCGATATTTCGTTTCACTGTGGTTATTCTCCACCCGACCAGATATCCTTCTCCAGATGCTCCGGATCCTGACCTTTTATAGTCACATGGTGCATTTTCCTGGTCCATCAAACATTGCAAAGATCTGAAATTAA----------------------------GTTTGGAAgacattcaga
i cb4.chrX              I 285 I 8
s caeRem4.Crem_Contig15    61640 192 -  1794024 TTACCTTTTGAAGAATCTGGAGGAGTATGAATTCCAGTCAACTTATTTGCCACATTTCGTTTTACAGAAGTGATACGCCATCCAACCAAATAGCCTTCTCCGGAGGCACCTGTTCCAGAACGTTTGTAATCGCAAGGTGCATTATGTTGGTCCATCAAACATTGCAGagacctgaaaaaaa---------------------------tgttt--------cttggC
i caeRem4.Crem_Contig15 I 14 I 24
s caeSp111.Scaffold582     84747 214 +   484378 ATACCTCTGGAAGGATCTGGTGAAGTATGAATTCCTGTTAACTTGTTTGCTATATTTCGTTTGACGGATGTGATTCTCCACCCAACAAGGTATCCTTCACCGGATGCACCGGTTCCAGAACGTTTGTAGTCGCATGGAGCATTTTGTTGGTCCATTAAACATTGAAgtgatctgaaaatca-----aaattcgtaattaattttcattagttt--------ttaaaa
i caeSp111.Scaffold582  I 2 I 4
s caePb3.Scfld02_0       3201361 188 -  4147112 aaacctCTAGATGGATCAGGAGAAATATGGATTCCTGTCAAACGGTTCGCAACGTTTCGTTTTGGAGAAGTTATCCGCCAACCAACTAAATAGCCTTCTCCAGATGCCCCTGTTCCAGATCGTTTATAATCACATGGTGCATTTTGTTGATCCATCAAACATTGAAGTGATCTGGAA-------------------------------TGTTT--------CTGATG
i caePb3.Scfld02_0      I 7 I 190
s caeJap4.Scaffold18213   197761 171 +   720316 TTACCCAGAGAGCTTCCAGGGGAATGATGTATTCCAGTCAGCTTGTTAGCAACATTCTTGTTTACCGAAGTGATTCTCCACCCAACCAGATAACCCTCTCCTTGGGAACCACTACCAGATCGTTTATAGTCACATGGTGCATTCTTCTGATCCATAAGACATTGTAAAGAT--------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0

a score=93625.000000
s ce10.chrX              2468505 136 + 17718866 AACTCACTGGCAATCATTTTCTGCGCTTTTATCTAGAAGAATAAGCTCATTTAATGAACTCGATGCGTTGACAAGCGTCGGAGCTGCTTGCTGTTTAACTTCTCGAGATAACAGGTGGGATTCCGCTCGGAAATCT
s cb4.chrX              17212884 136 - 21540570 taCTCACTGGCAATCATTATCCACATTCTCGTTCAACATAATCAACTCATTAATTGAATTCGATGCGTTCACAATTGTTGGCGCTGCTTGTTGCTTCACTTCTCGGGAAACCAAGTGAGGCTCTGGTTGGACGTCT
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15    61856 136 -  1794024 TACTTACTGACAATCGTTGTCCACGCTTTCATTGAGTAGAATCAACTCATTTATTGAGTTTGATGCATTCACTTTAGTTGGTGCTGCTTGTTGTTTCACTTCTCGAGACACAAGATGAGGTTCTGGTGGAAAGTCT
i caeRem4.Crem_Contig15 I 24 C 0
s caeSp111.Scaffold582     84965 136 +   484378 aactCACTGGCAATCACCATCAacgttttcattcaaaagtatCAATTCATTCACTGAGTTTGAAGCATTCACTATGGTTGGAGCTGCTTGTTGTTTGACTTCTCTTGACACCAAATGAGGCTCCGGTTGAATATCT
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3201739 136 -  4147112 AACTCACTGGCAGTCCCCATCAACGTTTTCATTCAGGAGGATAAGTTCGTTTACTGAGTTTGACGCATTCACTATTGTCGGAGCGGCTTGTTGTTTTACATCTCGAGACACCAAATGTGGTTCTGGTGTTATTTCT
i caePb3.Scfld02_0      I 190 C 0
s caeJap4.Scaffold18213   197932 129 +   720316 -------TGACAATCATTATTAGAGTTCTCATTTAATTGTATGAGCTCAGTTACGGAACTTGAAGAGTTTACAATTGTTGGAGCAGCTTGCTGAGAAACATCTCGGGAAACATAATGGGCTTCTGGTTTGTATTCT
i caeJap4.Scaffold18213 C 0 C 0

a score=38.000000
s ce10.chrX              2468641 1 + 17718866 G
s caeRem4.Crem_Contig15    61992 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   198061 1 +   720316 G
i caeJap4.Scaffold18213 C 0 I 29
e caePb3.Scfld02_0       3201875 0 -  4147112 C
e cb4.chrX              17213020 0 - 21540570 C
e caeSp111.Scaffold582     85101 0 +   484378 C

a score=-273.000000
s ce10.chrX              2468642 3 + 17718866 GAA-
s caeRem4.Crem_Contig15    61993 3 -  1794024 CAA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     85101 3 +   484378 GAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3201875 4 -  4147112 GAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   198062 29 +   720316 I
e cb4.chrX              17213020 0 - 21540570 C

a score=-957.000000
s ce10.chrX              2468645 8 + 17718866 TATTATAA-
s caeRem4.Crem_Contig15    61996 8 -  1794024 TA-CTTCAA
i caeRem4.Crem_Contig15 C 0 I 24
s caeSp111.Scaffold582     85104 5 +   484378 ---Catca-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3201879 0 -  4147112 C
e caeJap4.Scaffold18213   198062 29 +   720316 I
e cb4.chrX              17213020 0 - 21540570 C

a score=401.000000
s ce10.chrX              2468653 8 + 17718866 ACATTAAA
s caeSp111.Scaffold582     85109 8 +   484378 atattcaa
i caeSp111.Scaffold582  C 0 I 21
e caePb3.Scfld02_0       3201879 0 -  4147112 C
e caeJap4.Scaffold18213   198062 29 +   720316 I
e cb4.chrX              17213020 0 - 21540570 C
e caeRem4.Crem_Contig15    62004 24 -  1794024 I

a score=0.000000
s ce10.chrX              2468661 403 + 17718866 GCTATGCTTTTTTTTCTGTTCACCGGCAAGGAACAGCTAAAATTCTTTCATTTAAAAAAAAAAAGATATTTAAAGATGAAGTTGTGCCAGTGGGGATTTTAcaaaactaccgaatatcattgtaaaacacaccaaaaaattttttgtttttttaacgaaattccagtcaaacttttggcaagtcgccaaatttttaacaatcacgagcttcgaaggagttcaagagcaatttcgcatattccgacacctcgaatgatttaaatcagatgattaaaacaaaattaaagtataaaaatcatagaaaaatatttttttcggtcggcttttaaaattatgagtggcaatgagcgtcactttttgacactaaattttaaaaattcaaaaattttttttgacacgttcg
e caePb3.Scfld02_0       3201879   0 -  4147112 C
e caeJap4.Scaffold18213   198062  29 +   720316 I
e cb4.chrX              17213020   0 - 21540570 C
e caeSp111.Scaffold582     85117  21 +   484378 I
e caeRem4.Crem_Contig15    62004  24 -  1794024 I

a score=-442.000000
s ce10.chrX              2469064 71 + 17718866 acaatgatatttgatcaACTTTTTCCCCACGTACTTCACCTATACTTTCAAATTGATAATCTTAAAAATAC
s caePb3.Scfld02_0       3201879 34 -  4147112 GCAATGATAAGtaagaaatctttt------------------ttttttcaaa-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   198062 29 +   720316 I
e cb4.chrX              17213020  0 - 21540570 C
e caeSp111.Scaffold582     85117 21 +   484378 I
e caeRem4.Crem_Contig15    62004 24 -  1794024 I

a score=-2983.000000
s ce10.chrX              2469135 49 + 17718866 GATATAGTCTTAAAATTTGTGACCTGTTTTTTGGAACTACCCTCTAAGA
s cb4.chrX              17213020 37 - 21540570 GATTTa--cttaaaatt--tcatttcattttttcaattccc--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3201913  7 -  4147112 -----a--ttcaaa-----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   198062 29 +   720316 I
e caeSp111.Scaffold582     85117 21 +   484378 I
e caeRem4.Crem_Contig15    62004 24 -  1794024 I

a score=256.000000
s ce10.chrX              2469184 10 + 17718866 TACACTCTAA
s caeJap4.Scaffold18213   198091 10 +   720316 TACAAATCAA
i caeJap4.Scaffold18213 I 29 C 0
e caePb3.Scfld02_0       3201920  0 -  4147112 C
e cb4.chrX              17213057  0 - 21540570 C
e caeSp111.Scaffold582     85117 21 +   484378 I
e caeRem4.Crem_Contig15    62004 24 -  1794024 I

a score=768.000000
s ce10.chrX              2469194 7 + 17718866 AAATCTT
s cb4.chrX              17213057 2 - 21540570 -----tC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    62028 7 -  1794024 aaagttT
i caeRem4.Crem_Contig15 I 24 C 0
s caePb3.Scfld02_0       3201920 2 -  4147112 -----tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   198101 7 +   720316 AGAATTT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     85117 21 +   484378 I

a score=592607.000000
s ce10.chrX              2469201 898 + 17718866  
s cb4.chrX              17213059 890 - 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig15    62035 849 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     85138 835 +   484378  
i caeSp111.Scaffold582  I 21 I 1
s caePb3.Scfld02_0       3201922 840 -  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   198108 903 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-62.000000
s ce10.chrX              2470099 5 + 17718866 ATGTT
s caeRem4.Crem_Contig15    62885 5 -  1794024 atgtt
i caeRem4.Crem_Contig15 I 1 I 31
s caeSp111.Scaffold582     85974 5 +   484378 ttatt
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3202763 5 -  4147112 atgtt
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   199011 1 +   720316 --G--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17213949 38 - 21540570 I

a score=-6305.000000
s ce10.chrX              2470104 30 + 17718866 TGAGTTAGACA------------AAATTTATTGATTTTGAGA-
s caeSp111.Scaffold582     85979 26 +   484378 t---ttaataa------------aagtTCAATTGCTGTCAG--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3202768 38 -  4147112 t---ttaaaaaacaggatgagataaaattaaacaaaacaac--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   199012 21 +   720316 ---------------------AGATAATTATTGATTATAAG-A
i caeJap4.Scaffold18213 C 0 I 23
e cb4.chrX              17213949 38 - 21540570 I
e caeRem4.Crem_Contig15    62890 31 -  1794024 I

a score=187.000000
s ce10.chrX              2470134 1 + 17718866 T
s caeRem4.Crem_Contig15    62921 1 -  1794024 C
i caeRem4.Crem_Contig15 I 31 C 0
s caeSp111.Scaffold582     86005 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3202806 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   199056 1 +   720316 C
i caeJap4.Scaffold18213 I 23 C 0
e cb4.chrX              17213949 38 - 21540570 I

a score=83871.000000
s ce10.chrX              2470135 111 + 17718866 TACCATTATAAGAACCATGAT---AACTACTT---GAGCCACTATCCAATTGAGATCGACATGCAGGATTATAGCGATAAGTGGCGACTGAACAGGTGCCTTGGTTTGAAAGGCATG
s cb4.chrX              17213987 114 - 21540570 TACCATTATAAGATCCCTGAC---TGCTAGTTTGGGAGCCACTAGCGTATTGGGCTCGGCATTGTGAGCTGTATCGATATGTGGCAACTGAGCAGGATCCTTGATTTGAAAGGCATG
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig15    62922 114 -  1794024 TACCAGTATAAGATCCTTGAT---GACTAGTCTGTGCGCCACTGTTGTATTGTGTTCGGCACTCAGAACTATACCGGTAGGTGGCTACTGAGCAAGATCCTTGATTTGAAAGACACG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     86006 114 +   484378 TACCACTATATGATCCTTGAT---AACTGTTCTGAGAACTACTATCGAATTGAGTTCGACATTGTGAACTATATCGATATGTTGCTACTGAACAAGATCCTTGATTGGAAAGACACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3202807 114 -  4147112 AACCACTATAAGACCCCTGAT---AGCTATTTTGAGCACCACTGTCAAATTGAGATCTACATTGTGAGCTATACCGATATGATGCAACAGAACAGGAACCTTGGTTAGAAAGACacg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   199057 117 +   720316 TACCACTGTAAGAGCCGTGATAAGAACTACTACGGAGACCGCGATCCAATTGGGCTCGGCAGTCAGAATTGTATCGGTAAGTGGCAACGGAACACGTTTCTTGGTTAGAAAGACACG
i caeJap4.Scaffold18213 C 0 I 35

a score=2840.000000
s ce10.chrX              2470246 8 + 17718866 AAGATACT
s cb4.chrX              17214101 8 - 21540570 GGAAGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    63036 8 -  1794024 AACAAACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     86120 8 +   484378 AACGAACT
i caeSp111.Scaffold582  C 0 I 13
s caePb3.Scfld02_0       3202921 8 -  4147112 aatgaact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   199174 35 +   720316 I

a score=933.000000
s ce10.chrX              2470254 3 + 17718866 GAA
s cb4.chrX              17214109 3 - 21540570 GGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    63044 3 -  1794024 AAA
i caeRem4.Crem_Contig15 C 0 I 81
s caePb3.Scfld02_0       3202929 3 -  4147112 gaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   199174 35 +   720316 I
e caeSp111.Scaffold582     86128 13 +   484378 I

a score=-649.000000
s ce10.chrX              2470257 3 + 17718866 CAA-
s cb4.chrX              17214113 3 - 21540570 TAG-
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3202932 3 -  4147112 -aaa
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18213   199174 35 +   720316 I
e caeSp111.Scaffold582     86128 13 +   484378 I
e caeRem4.Crem_Contig15    63047 81 -  1794024 I

a score=-1752.000000
s ce10.chrX              2470260 313 + 17718866 TAGTTCAAGTGAATTATGTTCATTAGAG--ATAGGTTTTTCTT------------TAAAGGAGGACTACTTTTCAAACTAACATTTCTAAATTTGGCTTTTTTTTCGTGGAAAGAAACTTATTTTTCTTCAATAGTTGTCCTATTTTTCATATTTTGATGGCGTATATTTTATTATTTTATTGATTTAGGTTCgacagggaaaaattcccaaaatttcagatatttgctaaaattagcccttttcttgaatttttgtaccgccctaaaaaaatgtttgaaaaatttttgaaaagttttttttacgaaattggtttatttCCTttaaa
s cb4.chrX              17214116 210 - 21540570 GAATTTCAATG-TTAATATTTTTTAGGGTAAAAGGTtttaccgtaaaccctgtaataaaaggggaTT----------CTAACTTTtcccaatttatcttggttcttgttaaagata------------tgaaaaattg--------------------------------------ttaactga--caAGTTGTGtaacataatatcacaaacattt----tatc------agttagcacatttctgatatct---------cttaaagaaat------------------------------cgaga-----taatttagcttaaa
i cb4.chrX              C 0 I 22
e caePb3.Scfld02_0       3202935  36 -  4147112 I
e caeJap4.Scaffold18213   199174  35 +   720316 I
e caeSp111.Scaffold582     86128  13 +   484378 I
e caeRem4.Crem_Contig15    63047  81 -  1794024 I

a score=0.000000
s ce10.chrX              2470573 66 + 17718866 acaagactaactgtttttagtattttgaaagtataatacaaacccaaattgtgctaaaatgaacaa
e caePb3.Scfld02_0       3202935 36 -  4147112 I
e caeJap4.Scaffold18213   199174 35 +   720316 I
e cb4.chrX              17214326 22 - 21540570 I
e caeSp111.Scaffold582     86128 13 +   484378 I
e caeRem4.Crem_Contig15    63047 81 -  1794024 I

a score=-2138.000000
s ce10.chrX              2470639 433 + 17718866 atttcgtaaaaaagcttctcaaaaaaatatttaaaaattttcatggcggttcaaaatttcgaaaaaaaaagccaaattttaactaaaatcttcaaggttgcctacttttcagtgCTGCAGCGAACGGGAGTTAAACAATAAAAAACAGtgagataaactctcaaaataagcaataaatgata-ataatctttaaaaaaatcaacgttggaccgctgcgaca----ctgataaattgcaaaatttgaacaatttgaacaaaattataccacttt---tttcaaaacttcgaaccaccatacagtttttcaaaaaaaaatctttgagaagttttattacaaaattggcttattttagtacattttgggtctacaGGCTTTAATTTTTTGTCAAAAAACAAATAATTTCGAAACAAATTTTACACGCTCTCAATACAGTTCGAT
s cb4.chrX              17214348 286 - 21540570 atttc------aggttttacggtatgttatCTGAAAACTTGCTTttctttgcaaaattttcaactaattctCCAAATTCCAATCTAAAGTTT------------------------------------------------AAAACCA-------AAAGTATCAAAATTGGCAAAATCTCAGACACGAATTTCGACAAAATACTTGTCAATTTACTCTGAAAGTTTCtgacaaatcaaaaattctaaactatT----------------ACTTTAGGTGTTaaaatt----------aggtcatttttca---------cttgaataaat-------cgaaat--atttttttttgttcagtacgg-----taagct-------------aaaaatcgaaaaaactcggA--------------------------------
i cb4.chrX              I 22 C 0
e caePb3.Scfld02_0       3202935  36 -  4147112 I
e caeJap4.Scaffold18213   199174  35 +   720316 I
e caeSp111.Scaffold582     86128  13 +   484378 I
e caeRem4.Crem_Contig15    63047  81 -  1794024 I

a score=1585.000000
s ce10.chrX              2471072 15 + 17718866 GTTTTCAAAATACAA
s cb4.chrX              17214634 14 - 21540570 -TATTAAAAATAAAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     86141 15 +   484378 gttttcagaatttag
i caeSp111.Scaffold582  I 13 C 0
e caePb3.Scfld02_0       3202935 36 -  4147112 I
e caeJap4.Scaffold18213   199174 35 +   720316 I
e caeRem4.Crem_Contig15    63047 81 -  1794024 I

a score=47.000000
s ce10.chrX              2471087 3 + 17718866 AAT
s cb4.chrX              17214648 3 - 21540570 GGA
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold582     86156 3 +   484378 aAG
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold18213   199209 3 +   720316 aag
i caeJap4.Scaffold18213 I 35 C 0
e caePb3.Scfld02_0       3202935 36 -  4147112 I
e caeRem4.Crem_Contig15    63047 81 -  1794024 I

a score=380062.000000
s ce10.chrX              2471090 955 + 17718866  
s cb4.chrX              17214658 966 - 21540570  
i cb4.chrX              I 7 I 26
s caeRem4.Crem_Contig15    63128 942 -  1794024  
i caeRem4.Crem_Contig15 I 81 I 19
s caeSp111.Scaffold582     86163 941 +   484378  
i caeSp111.Scaffold582  I 4 I 14
s caePb3.Scfld02_0       3202971 937 -  4147112  
i caePb3.Scfld02_0      I 36 I 22
s caeJap4.Scaffold18213   199212 969 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2472045 27 + 17718866 attttatttatttatttttGCTTTTTT
e caePb3.Scfld02_0       3203908 22 -  4147112 I
e caeJap4.Scaffold18213   200181  0 +   720316 C
e cb4.chrX              17215624 26 - 21540570 I
e caeSp111.Scaffold582     87104 14 +   484378 I
e caeRem4.Crem_Contig15    64070 19 -  1794024 I

a score=74324.000000
s ce10.chrX              2472072  96 + 17718866 CACTTTGAATCTAGCTCCATTTGATGATGTTCCGGCGCTGAATATGTTTTCCGTGTCGCGTACCACCATTCCAATTGTGTCATGATTTGTTCTAAA-------------------
s cb4.chrX              17215650  95 - 21540570 -ACTTTAAATCGAGCTCCATTTGATGACGTTCCAGCACTGAACTTTTGATTAAGATCCATGACAACCATGCCGATGGTGTCGTGGTTAGTTCTGAA-------------------
i cb4.chrX              I 26 I 2220
s caeRem4.Crem_Contig15    64089  96 -  1794024 caCCTTGAATCGAGCCCCATTTGAAGATGTACCAGCACTAAACTTCTTTTCGAGATCAAATACTACCATTCCAATAGTGTCATGATTAGTTCTGTA-------------------
i caeRem4.Crem_Contig15 I 19 I 8
s caeSp111.Scaffold582     87118  96 +   484378 AACCTTGAATCGCGCTCCATTTGATGAAGTTCCGGcacttattttcttttccaagtCTAGAACCACCATTCCGATTGTGTCGTggtttgttctgaa-------------------
i caeSp111.Scaffold582  I 14 I 7
s caePb3.Scfld02_0       3203930  96 -  4147112 AACCTTGAATCGTGCTCCATTAGATGATGTTCCGGCGCTGAACTTCTTATTCAGGTCCAGAACCACCATTCCAATTGTGTCGTGGTTTGTTCTGGA-------------------
i caePb3.Scfld02_0      I 22 I 3
s caeJap4.Scaffold18213   200181 112 +   720316 ---TTTGAACCGAGCTCCATTTGAAGATGTTCCTGCACTGAATTTATTGTCCAAGTCGTACACGACCATTCCAATAGTGTCATGGTTATTTCTGCAATAAgcgggaaaaaataaa
i caeJap4.Scaffold18213 C 0 C 0

a score=12244.000000
s ce10.chrX              2472168 170 + 17718866 -----------TTTCAAACTGAAATTTATTACGAGCTTTAATCAAAAAAAATCTACTTTTCAACCAGATATCCAGCTTCGTCAGACTGATTTACAAGTGAATAATATCGCATTGATTTTGTCAAAGGATTT--GTTTTATAAGGTCCGCAGGAGCTGGAAGGATCGGGGGACACGTTCTGAAA
s caeRem4.Crem_Contig15    64193 142 -  1794024 -----------TATAAAATAGTACCACTGTTCTA----TCGGTAT------CCCACTTTTCAACATTGTATCCAATCTCA----------TTAGAACTGTAT--TCTCTCGATAA------CAACGGTTTT--GGCTGGTAAGGTCCACAAGATGTACCTGGATCTGGTGACACATTCTGAAA
i caeRem4.Crem_Contig15 I 8 I 7
s caeSp111.Scaffold582     87221 137 +   484378 -----------TGTTAACTGG--TGTTTTTTCGA----TAAGCAA---------ACTTCTCAACAAGGTATCCAGCCTCA---------TTTACACTTGTG---TATTTATATAC------CGAAGGATTT--GGTTTGTAAGGACCGCATGATGAAGATGGATCGGGTGACacattcttgaa
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3204029 148 -  4147112 -----------AATTAATTAGAagaatgtttaaa----aaattaaggaTCACTTACTTTTCAACAGGGTATCCGGCTTCA--------GTCGAAAATTGC------TTGGAAGAC------AGCATGGCTTCCGGTTTGTATGGTCCACAAGATTGCGATGGGCTGGGAGAaacattctaaaa
i caePb3.Scfld02_0      I 3 I 153
s caeJap4.Scaffold18213   200293 157 +   720316 taattgcttATAATTTCATAAAAGATTTTTGCTC----TGTATAA-----ACTCACTTTTCCACATGAAAACCGACTTGA---------TTAGAGAACCTGCCACCTGAAGACAA------CAGCGCGTTT--GGTTGATATGGGCCACACGAACCAGATGGATCTGGTGaaacattctgaaa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17215745 2220 - 21540570 I

a score=273.000000
s ce10.chrX              2472338 1 + 17718866 A
s caeSp111.Scaffold582     87358 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 96
s caeJap4.Scaffold18213   200450 1 +   720316 a
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeRem4.Crem_Contig15    64335 7 -  1794024 I

a score=-1568.000000
s ce10.chrX              2472339 132 + 17718866 CATAAACATTGATGGTGTTGGGAGCTAATTTGCT--------------------------------TTGTTTTCTAAGAG---AGCTTTAAGCTAGAG-GAATTATGAC---------------AAAACTATTCAAAAACAGCTT--AAAACCTCAAAAAACTGTTCAGATTA------AAATTTGTTGGT
s caeJap4.Scaffold18213   200451 190 +   720316 tttttagattttatttgtttgttaAAAATTTACTACTTACAGTACCGCTCAAAAGTATATtaagttttgatttttg-gagtttaacttttgaatggagagggttatgattctgaaaatttgcatgaatctgtcccgtaatgtttttgacaagctccaaaaatggatttggtcattttcgaaaactgctgat
i caeJap4.Scaffold18213 C 0 I 66
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeSp111.Scaffold582     87359  96 +   484378 I
e caeRem4.Crem_Contig15    64335   7 -  1794024 I

a score=0.000000
s ce10.chrX              2472471 31 + 17718866 ATATAAGCATGTAGGTATAGGCATAGGTATG
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e caeJap4.Scaffold18213   200641 66 +   720316 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeSp111.Scaffold582     87359 96 +   484378 I
e caeRem4.Crem_Contig15    64335  7 -  1794024 I

a score=-1049.000000
s ce10.chrX              2472502 143 + 17718866 GAAATAGATACTCGGTGACTG--TGACATTAAAAAATCCGTTAAAACATTT-----GACCGTGTGGCATGGTTGA-------------------ACTTTTGGTAT----------------------------------GTGGAAAATGATTAAGAACAAAATTAATATCATCGAAGAACACTGTTTTGCACGA----------AAAGTGCTT
s caeJap4.Scaffold18213   200707 209 +   720316 ggactagatatttattttctaaatgaagtttcaaaactaaaaaaattattttagttgactatgttgatcggacaattttcagctgacttacagcactttgagtatcagggtccacatgggtaagtcaactttaacttttattgagaatcaccaaaaccgaa--taaaatca--gataaactttgctttttgaCAGTTTTAATCTAAATTGCCt
i caeJap4.Scaffold18213 I 66 I 16
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeSp111.Scaffold582     87359  96 +   484378 I
e caeRem4.Crem_Contig15    64335   7 -  1794024 I

a score=0.000000
s ce10.chrX              2472645 13 + 17718866 GGCAACTACCGGC
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e caeJap4.Scaffold18213   200916 16 +   720316 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeSp111.Scaffold582     87359 96 +   484378 I
e caeRem4.Crem_Contig15    64335  7 -  1794024 I

a score=-1049.000000
s ce10.chrX              2472658 283 + 17718866 CGGTAATTCTACTGAAAGAGTCACTGTAAA-------ATGTAG----TGATAGTCAA-GTACTT-------GCT-----TTGTCt------------------taaaattatttttttaaataGTTTACAGACTTTTTTCAGTAAAAAAATCCGACAACGTA------CCAAAACAATTTCGGCAATTTCCATC---TCTCAGAC------------AACTTTTTGCCACTTTTTCAGTTGTCGTGAATATTTGTTATATAATTTAGCTTTTAATTTTACTGAAAAATTGGGAAAACAATCCAAAACTGGTTCAT-----TTTTTAAAATTGCCGATAGGCGATTTA---CGCA
s caeJap4.Scaffold18213   200932 329 +   720316 tggtgattct-caataaaagttatagttgacttacccatgtagaccctgatattcaaagtgctgtaagtcagctgaaaatcgtccgatcaacccatagtcaactaaaatcatacttttaa----ttttgaaactttattttgaaaataaatttcgaatcttgaaaaacttaaaaaaaaataaacaattttttttgggtctaaaattttggcatatgaaattttttgaaaaatcagcagttttcaaaaatggcca------aatccatttttgaagcttgtcaaaaa----------cattacgggacgaATTCAtgcaaactttcagaatc----ataGCCCTCTcaattcaaa
i caeJap4.Scaffold18213 I 16 C 0
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e cb4.chrX              17215745 2220 - 21540570 I
e caeSp111.Scaffold582     87359  96 +   484378 I
e caeRem4.Crem_Contig15    64335   7 -  1794024 I

a score=396.000000
s ce10.chrX              2472941 3 + 17718866 ACT
s cb4.chrX              17217965 3 - 21540570 ACT
i cb4.chrX              I 2220 C 0
s caeJap4.Scaffold18213   201261 3 +   720316 agt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e caeSp111.Scaffold582     87359 96 +   484378 I
e caeRem4.Crem_Contig15    64335 7 -  1794024 I

a score=-4012.000000
s ce10.chrX              2472944 23 + 17718866 TTTACATGAAAAATTA----TTAATCA-----------------
s cb4.chrX              17217968  7 - 21540570 --------------------TCTGTAT-----------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15    64342 23 -  1794024 TTTACAAACAAAGTTT----TTCACAA-----------------
i caeRem4.Crem_Contig15 I 7 I 3
s caeJap4.Scaffold18213   201264 44 +   720316 tatactccaaaaatcaaaacttaATACACTTTTGAGCGGTACTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3204177 153 -  4147112 I
e caeSp111.Scaffold582     87359 96 +   484378 I

a score=38.000000
s ce10.chrX              2472967 1 + 17718866 C
s caePb3.Scfld02_0       3204330 1 -  4147112 C
i caePb3.Scfld02_0      I 153 C 0
s caeJap4.Scaffold18213   201308 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17217975 3 - 21540570 I
e caeSp111.Scaffold582     87359 96 +   484378 I
e caeRem4.Crem_Contig15    64365 3 -  1794024 I

a score=330322.000000
s ce10.chrX              2472968 613 + 17718866  
s cb4.chrX              17217978 611 - 21540570  
i cb4.chrX              I 3 I 38
s caeRem4.Crem_Contig15    64368 608 -  1794024  
i caeRem4.Crem_Contig15 I 3 I 15
s caeSp111.Scaffold582     87455 609 +   484378  
i caeSp111.Scaffold582  I 96 I 3
s caePb3.Scfld02_0       3204331 614 -  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   201309 642 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-11733.000000
s ce10.chrX              2473581 35 + 17718866 AGAGTGAG--TTTTCAGA------------G------TAGTATATACTATTATTT-
s caeRem4.Crem_Contig15    64991 37 -  1794024 agagTGAG-------AAA--CCACCAAGGAG------TAGCAAAGAAGAGTA----
i caeRem4.Crem_Contig15 I 15 I 5
s caeSp111.Scaffold582     88067 49 +   484378 AAAACGAATGTTTGAAGGTTCTTCTTAATGT------TGGTAGATAAAATCAACC-
i caeSp111.Scaffold582  I 3 I 1
s caePb3.Scfld02_0       3204948 46 -  4147112 AAAGTGGA--TTCAAAGA-------AAAGGTGGCGACCGGTAGataaaatcagtt-
i caePb3.Scfld02_0      I 3 I 1
s caeJap4.Scaffold18213   201951 15 +   720316 -----------------------------------------aAAGATAATTCTCct
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17218589 38 - 21540570 I

a score=-7467.000000
s ce10.chrX              2473616 20 + 17718866 GCTAAGACTTGAAAAATCGA-----
s cb4.chrX              17218627 20 - 21540570 AATCAATTCCACAAGGAAGA-----
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig15    65033 20 -  1794024 AATCAACcttcaaataaaaa-----
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582     88117  8 +   484378 ---------GC---TGGGAA-----
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3204995 11 -  4147112 ---------tccaataaaaa-----
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   201966 17 +   720316 --------gtgaagaaaaaaagtga
i caeJap4.Scaffold18213 C 0 I 2729

a score=-2435.000000
s ce10.chrX              2473636 93 + 17718866 TGAAAGATGTGGCGGCAAGATAGTATC--TAGAGCGATCGAGCGTTCTTTGCAA----ATGGTGACATCTG-CTGTC----GAATGTCCCAATGTCTCATCTGC--
s cb4.chrX              17218647 68 - 21540570 AGAGACAGTTGGCTTC------TTTTC-------CAATCG--------------------CGTTCCATCTGTCAA-----AGGTCATCTGCTTTTCACATCTGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    65053 92 -  1794024 gaagatacACGACctca--atatttttgatgatgcAGTCAA-CGTTC-----------TTAGTTCCATCTGGCAATCCTTCGGCTATCCCGTTTTCACATCTGGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     88125 89 +   484378 AAAGAGGCGCGGTTTT------TTCTG--AGATGTAATCAA-CGTTCTTTGTTA----CTGGTTCCATCTGGCATTC----GAGTACTTTATTTTCACATCTGTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3205006 87 -  4147112 agagagacgaGACCTT------CT-TC--CGATGCAATCAA-CGTTCTCGGTTGACTCTTGGTTCCATCTGGCGGTC--------ATTTTTATTTCCCATCTGTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   201983 2729 +   720316 I

a score=605817.000000
s ce10.chrX              2473729 1029 + 17718866  
s cb4.chrX              17218715 1061 - 21540570  
i cb4.chrX              C 0 I 400
s caeRem4.Crem_Contig15    65145 1036 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     88214 1039 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3205093 1038 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   204712 1076 +   720316  
i caeJap4.Scaffold18213 I 2729 C 0

a score=-9647.000000
s ce10.chrX              2474758 41 + 17718866 TTAGGTTAAATAATAAATAAAATTGCAGGCGAATAAAAGGG---------
s caeRem4.Crem_Contig15    66181 26 -  1794024 -TTGTTTTgatatgaaa--------------cattttctag---------
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582     89253 21 +   484378 ------ttatttttgaa--------------aatgagttga---------
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3206131 24 -  4147112 --------aatattgaa---------gcgTGAATAAGTGAA---------
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18213   205788 45 +   720316 -TAAGATAAACAATTAA----TTATTAATTGAATATGGTAATTTTCTTAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17219776 400 - 21540570 I

a score=160549.000000
s ce10.chrX              2474799 213 + 17718866 TACCTTTAATGATCCAACCGATTCTGCAAAACTTCTCTTATCATTTTCATTCGCTCTTGATGGGGGATTTGAAATGAGTACAGGATGACTATCAAGAGTCTCTCCGTTACACTTCAATGATCCTTCAATCACAATGTCCTGAATGAAAATTGCGCCACCTTCCTTGGCTATGAAATTGTTGCCAGAAAATACCAACTAAAAGAAAAATAAAAT------
s cb4.chrX              17220176 206 - 21540570 TACCTTTAATGATCCCACTGATTCTGCAAAACTTCTCTTATCATTATCATTTGCTCTTGATGGAGGATTGGATATCAACACCGGATGACTATCCAAAGTCTCGCCATTGCATTTCAGGGATCCCTCAATTACAATGTCTTGAAGGAAAAGTGCACCACCTTCCTTGGCGATGAAGTTGTTTCCCGAGAACACAATCTTAACa-------ccta------
i cb4.chrX              I 400 C 0
s caeRem4.Crem_Contig15    66215 200 -  1794024 TACCTTCAATGATCCAACCGACTCAGCAAAACTTCGTTTATCGTTATCATTAGCTCTAGATGGtggatttgaaatcagtgtgGGATGACTATCCAAAGACTCTCCGTTGCACTTGAGTGATCCCTCTATCACAATGTCTTGAATAAACAAAGCTCCTCCTTCTTTCGCaataaaattatttccagAGAACACaatctgaa-------------------
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582     89284 207 +   484378 AACCTTTAAAGAACCAACTGATTCCGCAAAACTTCGTTTATCATTGTCATTTGTTCTTGATGGAGGGTTTGATATAAGAGTTGGATGACTATCAAGAGTCTCTCCATTACATTTCAAAGAACCCTCAATCCCAATAtcttgaataaaaagagcACCGCCTTCCTTCGCGATAAAGTTGTTTCCGGAGAACACAAGCTGaaaa------ttccg------
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3206168 210 -  4147112 AACCTTCAAAGATCCAACTGATTCGGCAAAACTACGCTTGTCATTATCATTGGCTCTTGACGGAGGGTTGGAAATCAATGTTGGATGACTGTCCAGAGTTTCTCCATTACATTTCAATGATCCTTCAAGTACAATGTCTTGAATGAAAAGCGCGCCACCTTCTTTTGCAATGAAgttgtttccagaaaacacGAGCTGAGAA---AACAACTG------
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18213   205833 219 +   720316 TACTTTCAAACTGCCAACGTTTTCCGAGAAACTGCGTTTTTCATCACCATTCACTCTAGTTGGTGAGTTTGAAATCAAAACTGGATGACTATCCAAAGTTTCTCCATTGCACTTTAGAGCTCCTTCGATGACAATGTCTTGGATGAACAAAGCGCCTCCTTCTTTTGCAATAAAGTTGTTTCCAGAAAATACAATCTGCAATGAAATCGATCATAAAAT
i caeJap4.Scaffold18213 C 0 I 221

a score=-9990.000000
s ce10.chrX              2475012 23 + 17718866 TTTCAATATATA----TTCTGTTT--------CAA
s cb4.chrX              17220382 28 - 21540570 tttaaaaaattg----ttggatttataaa---aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    66415 34 -  1794024 -ttcagaaattgcAATCTAAATTCCAGAATTTAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     89491 27 +   484378 ttttcaaTCCTT----TTTCATT-ATGAA---TTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3206378 27 -  4147112 ttttggtttctgaaaatctcac-----aA---TCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   206052 221 +   720316 I

a score=117715.000000
s ce10.chrX              2475035 142 + 17718866 TACCTGAGTTGGGAGGTTAGGGTCATTAGGGGTTGGGATATCCGCTGTCATAGGAACACCATTTCTAATTTCAAACTCGTTGCAATTAATTAGCGGGAACTTTTCTTCGTTCGAATTCCTGACACAAATCTGAACAAGAAAT
s cb4.chrX              17220410 142 - 21540570 aaccTGCGTGGGAAGATTCGGATCATTCGGAGTTGGAATATCTGCTGACATTGGGACACCATTCCTAATTTCAAATTCGTTGCAATTAATGAGTGGGAACTTCTCCTCGTTGGAATTTCTCACACAAATCTTGAAAAGTGAt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    66449 140 -  1794024 TACCTGTGTTGGAAGGTTAGGGTCGTTGGGAGTTGGAATATCTGCAGACATGGGAACACCATTTCTGATCTCAAACTCATTGCAATTAATGAGTGGAAACTTCTCTTCGTTAGAATTACGGGCACAAACCT--ATCAAGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     89518 142 +   484378 TACCTGAGTTGGAAGGTTTGGATCATTTGGAATGGGAATATCAGCTGACATTGGAACGCCGTtacgaatttcaaattcattacAATTGATAAGCGGgaacttttcttcattcgaatttcttacacaaatcttgaaaaaaatt
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3206405 140 -  4147112 TACCTGAGTTGGTAGATTTGGATCGTTTGGAAGTGGAACATCAGCTGTCATTGGCACTCCATTTCTTATTTCAAACTCATTACAGTTTATAAGAGGGAACTTTTCTTCGTTTGAATTCCTCACgcaaatct--aaaaaaatt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   206273 135 +   720316 TACCTGCGTAGGACTGTTAGGGTCATTTGGAGTGGGAATATCTGTTGAGATTGGTACTCCGTTCCTAATTTCAAACTCATTGCAATTTATAAGCGGGAACTTTTCTTCATTAGAGTTTCTCACGCAGACct--aaaa-----
i caeJap4.Scaffold18213 I 221 C 0

a score=-5033.000000
s ce10.chrX              2475177 28 + 17718866 ATTTACGTGCTTGTGGGGAAA---ACTCAAA
s cb4.chrX              17220552 23 - 21540570 ---agtattttttttgggaaa-----tcaCA
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15    66589 14 -  1794024 ---AGAACGTTT--------------TCATA
i caeRem4.Crem_Contig15 C 0 I 25
s caePb3.Scfld02_0       3206547 15 -  4147112 ----gtataaTTGT------------TCAca
i caePb3.Scfld02_0      I 2 I 13
s caeJap4.Scaffold18213   206408 27 +   720316 ----atttatttgtaacaaaaaaaacgtata
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     89660 26 +   484378 I

a score=134021.000000
s ce10.chrX              2475205 182 + 17718866 ---------------GTTACCTGTAACTTTGGCTGTTCACCACCAGGCCCAACTTTACTTCTCCACGCAGTTGCGGTGACCCTCAAACCAGTTGTCATACAAGGTAAAGCATCAGATATGAGTTGACCGCTTTCCCATCCGTTTCTAGCAGGAGAAGTAAGCGAACCTGCGGATTGACCTGA------------AAACTCGAAAGTA---TT-
s cb4.chrX              17220604 192 - 21540570 -----------------TACCTGAAGTTTCGGCTGCTCACTAGTAGGTCCGACTTTACTCCTCCAAGCTGTAGCTGTCACTTTGAGCCCTGTCGTCATGCAAGGCAACGCGTCGGAAATCAGTTGTCCACTTTCCCAGCCATTTCTAGCAGGGGAAGATAGCGATCCAGCGGATTGGGCTAAAAATCAAGATGGGAAccgaaaacta---tt-
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig15    66628 181 -  1794024 ---------------GTTACCTGCAATTTTGGTTGTTCACTTGTTGGTCCCACTTTACTTCTCCATGCAGTGGCTGTCACTTTCAGCCCAGATGTCATACAAGGCAAAGCATCGGAAATGAGTTGTCCACTTTCCCATCCATTTCTAGCCGGAGATGTCAGAGATCCAGCAGATTGGCCTA-------------GAATAACAAATCA---TT-
i caeRem4.Crem_Contig15 I 25 C 0
s caeSp111.Scaffold582     89686 181 +   484378 ---------------TTCACCTGTAATTTAGGTTGCTCACTATTCGGTCCCACTTTGCTCCGCCACGCTGTCGCTGTCACTTTAAGACCAGTTGTCAGACAAGGCAAAGCATCGGAAACGAGCTGTCCACTCTCCCATCCATTTCTTGCTGGAGAAGTCAGAGAGCCGGCAGATTGGCCTG-------------GAATCATCAAACA---TC-
i caeSp111.Scaffold582  I 26 I 24
s caePb3.Scfld02_0       3206575 179 -  4147112 -----------------tacCTGCAGTTTTGGTTGTTCCCCAGTTGGTCCAACTTTACTTCTCCATGCAGTGGCTGTCACTTTCAGCCCAGAAGTCAAACAAGGCAACGCATCGGAAATGAGTTGTCCACTTTCCCAGCCATTTCTAGCAGGGGATGTCAGGGACCCAGCAGATTGTCCTGA------------AAAACgataaac----tc-
i caePb3.Scfld02_0      I 13 I 1
s caeJap4.Scaffold18213   206435 201 +   720316 aCTTTCTAGGCTTTTCAAACCTGTAATTTTGGCTGCTCGCTAGTTGGTCCCACTTTGCTTCTCCACGCGGTTGCAGTAATTTTTAAACCTGTGGTAAGACACGGAAGAGCATCCGAAATTAGTTGTCCACTTTCCCAGCCGTTTCGAGCTGGTGAAGTAAGAGATCCAGCAGATTGGCCTGA------------GAATTTACAATTagatttc
i caeJap4.Scaffold18213 C 0 C 0

a score=-10591.000000
s ce10.chrX              2475387 31 + 17718866 AAGACAAAGTAAAGA--------------TAAAAATGT-----------------------------AAAGAGT------
s cb4.chrX              17220796 66 - 21540570 --------tttagaaaaatcaaaaagtttctaaaGTTGCTAAAAATGGCCATTTTCgttattatgaaaaaaaat------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig15    66809 23 -  1794024 --------CTGAGAA--------------CAgaagttg-----------------------------aaaatat------
i caeRem4.Crem_Contig15 C 0 I 6
s caePb3.Scfld02_0       3206755 16 -  4147112 -----------aaaa--------------caaac---------------------------------aaattat------
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold18213   206636 31 +   720316 ------attttaaaa--------------aacaactga-----------------------------aaatagTAAACAA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     89867 24 +   484378 I

a score=419242.000000
s ce10.chrX              2475418  970 + 17718866  
s cb4.chrX              17220872 1010 - 21540570  
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig15    66838  937 -  1794024  
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582     89891  992 +   484378  
i caeSp111.Scaffold582  I 24 C 0
s caePb3.Scfld02_0       3206779  967 -  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   206667  910 +   720316  
i caeJap4.Scaffold18213 C 0 I 111

a score=-31015.000000
s ce10.chrX              2476388 113 + 17718866 GAAGTTCGAAG-----ATTTA------------------ATTGCT------TTTTTTGTAACAATTGCAAGCAAAAAAAAAGATTGGATATTCaaatgaggtctaacgtttcaaacaaactta-gt----gttgaaacttctcaaag
s cb4.chrX              17221882 123 - 21540570 gataaactgaaaaaatgtttcaaaaattatgatgaacaatttatcagttgatagttttttgtaatttttcctAAGAAC--------CATGATAAATTGAG---------TTAACGTAAAC--A-GT----Gctaagattttttgatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    67775  85 -  1794024 AACTAACTAAA-----GCTTC------------------TTTGTCCG----aatcttttcactttttttcacaagGA---------GATGGCAGAGT------------TTCAAGCATGA--A-GTAGAAACTAAG-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     90883  70 +   484378 GATTTTcta-------attct------------------attttcaaaataagaaTGAGCATTAT----------------------Atagttcatt------------tcaaaacaatc--a-gC----TATCGG-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3207746  74 -  4147112 AAAGCGCCAAG-----ATGGG------------------ATTTTGGCTTTCAGACATATCATCAT---------------------GGTATTAGGTA------------GCAGGATAAAA--ACAT----TATAAG-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   207577 111 +   720316 I

a score=-24294.000000
s ce10.chrX              2476501 47 + 17718866 -----aaaaat---tcaaa-------aacttttatggcggttcaa-------aattAAAATCTCCAATT
s cb4.chrX              17222005 56 - 21540570 -----ataatt---TTCTCTTAGGAGAAATACC---GTATAACATATAATAGAA--AAGCTTTCACatt
i cb4.chrX              C 0 I 76
s caeRem4.Crem_Contig15    67860 35 -  1794024 -------GAAT---TTCTC-----ACCACTTCT---GTACTCCAT-------GA--AGG-------ATT
i caeRem4.Crem_Contig15 C 0 I 14
s caeSp111.Scaffold582     90953 33 +   484378 -------ATATGTATTTCA-------AACT-------TAGACCAT-------AA--AAA---TC---TT
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3207820 35 -  4147112 -------AAAT---TTTCC-------AGCTAC-----caatccga-------aa--aaa---acaagtc
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold18213   207688 44 +   720316 aagaattaaat---tttta----gaaaaataaa---------aat-------aa--aaatcatgcaATT
i caeJap4.Scaffold18213 I 111 C 0

a score=806.000000
s ce10.chrX              2476548 5 + 17718866 TTTGT
s caeSp111.Scaffold582     90992 3 +   484378 --tgt
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3207876 5 -  4147112 TTTAT
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold18213   207732 5 +   720316 TCGGT
i caeJap4.Scaffold18213 C 0 I 92
e cb4.chrX              17222061 76 - 21540570 I
e caeRem4.Crem_Contig15    67895 14 -  1794024 I

a score=-4610.000000
s ce10.chrX              2476553 37 + 17718866 CACTTTTTGGTGTTGCAGCGCCGCGAAGA-----TGACTTTT
s caeRem4.Crem_Contig15    67909  8 -  1794024 ----------------------------------CGGGTCTT
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582     90995 22 +   484378 tttccttatttttt--------------------tgaacttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3207881 40 -  4147112 AATCCTTATTAGTTGTA--TCCGACAAAAGTCACCGAATGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   207737 92 +   720316 I
e cb4.chrX              17222061 76 - 21540570 I

a score=-18325.000000
s ce10.chrX              2476590 73 + 17718866 TTAAAATTA----GCATCTTTTATTGCGCATTTTAGTTGTAAAATTCATGTTGAGCAGATAGCCAACCTAAAATGAC
s cb4.chrX              17222137 62 - 21540570 ttatgataa----tcattttgtgttgaactttttgata------tctttgacaag-----aaccgagataaattgac
i cb4.chrX              I 76 I 72
s caeRem4.Crem_Contig15    67917 33 -  1794024 TT----CAA----TTCTCTCatctcaaa--ttttaatt------ttcat----------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91017 20 +   484378 ---ta--------ctATCTCCACCCAAA----CTA------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3207921 42 -  4147112 ---TGCCAATGATCTAACTTGGCCcgaa----tcaatt------tttct--------------------aaattg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   207737 92 +   720316 I

a score=0.000000
s ce10.chrX              2476663 12 + 17718866 AAAACTTTGGCA
e caePb3.Scfld02_0       3207963  0 -  4147112 C
e caeJap4.Scaffold18213   207737 92 +   720316 I
e cb4.chrX              17222199 72 - 21540570 I
e caeSp111.Scaffold582     91037  0 +   484378 C
e caeRem4.Crem_Contig15    67950  0 -  1794024 C

a score=-8984.000000
s ce10.chrX              2476675 33 + 17718866 CTCACAAAACTATTAAAAATTGATAACAATTAG
s caeRem4.Crem_Contig15    67950 12 -  1794024 ------aacttttcg-cAA--------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91037 16 +   484378 -----TAAGTTA----CAacgaata--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3207963 27 -  4147112 ---attAAATCATCATCGATGATTAACACT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   207829 32 +   720316 ttttcagaacttttgaaaatttgtattgtttt-
i caeJap4.Scaffold18213 I 92 C 0
e cb4.chrX              17222199 72 - 21540570 I

a score=-25470.000000
s ce10.chrX              2476708 219 + 17718866 TCCCACTAAAAAAG---------------TTTTTAATA--------AATCTTC---------CCTTTCCGATTTAAT-----------ATCATTAGTAATTCTTTTACCTCTTCA----------------------------ATATAAATTTTTTT-------------------------------ATA---AACCCAGTATCT----------------------CACCGAATCTATGTCGAATACC------TAAACCGACACCGGTTTT-GGTCTCC------------TCCGCGAGGCATGGATTAAGTTGCTCATTTCGGCTAC---ATGTGAAAA-----CTTG-TTTAGGATATCATAGCTCTAC
s cb4.chrX              17222271 342 - 21540570 TCCCTTTagagaaaaacgaattttttgatgtttttttgtcttggaacattttttttaattcaattttttaaatcggcttccattttaaattgctactattttttttccatattcccATTTCTTCATTCTAAACTTTCTTCTATTCCTCAATCTTTCGCAACCATGGAAAAAGTTATGATTGATCATGAATATC-TATTTATTTGCCAAATCGGATAAC--------AACACGAAAAC--------ATAT---------AGCCTTTTCCAATTGTCAAGCCCTATACCGGTTTAGCCCGCAAGAAGTGGATTATGTAGCTCATTT-GACT-----GTTCCAAaaacccgtttttttttggataacaTGGCTCTAC
i cb4.chrX              I 72 I 23
s caeRem4.Crem_Contig15    67962 186 -  1794024 --CCTCCAGTAAAG---------------TTTTTATTAGCCACTAATATATTT---------ATTGGCCGAATCGG------------ATAACAACTA----------------------------------------------CCTAAATCCC----------------------------------ATATC-TACTCATTTTC-----------------------CGCCAGACC--------ATA------------CCGGTTCGCAGTCTCACTCC--------------TCCGCGAGAAATGGATTAAACTGCTCATTT-GGCT-----ATCGTGAAA-----cttgtttttcga-aacatgGCTCTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91053 167 +   484378 -----------------------------tttttattt----------------------------gccGAATCGG------------ATAACAACT----------------------------------------------TCCGAAATCCTCCG-------------------------------ATACCTCCCTCATTTCCC----------------------CGCCAGACC--------ATA-----------ACCTGTACCGGTTTGCAGTCTTC------------GCCGCGAGAAATGGAATTAGCTGCTCATTT-GACTAGTA-AGTAAAAAA-----CTTG-TTTAGGATAACATGGCTCTAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3207990 176 -  4147112 ----------------------------GTTTTCATTTCCGACCCAttttttt---------ATTGGCTGAATAGG------------ATAACATTT----------------------------------------------ACTATAACCTACC--------------------------------------CCCACACTTTGC----------------------CGCCAGACC--------ATA-----------ACCTGTACCGGTTTGCTGTCTCC------------TGCGCGAGAAATGGATTTAGCTGCTCATTT-ACCT-----AGTGAAAAA-----CTTG-TTTGGGATAACATGGCTCTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   207861 195 +   720316 -----------------------------tctttctaa------------------------cCAATTTAAATTTA------------GCAACATCA----------------------------------------------TCAACAACAAGTCA-------------------------------TTgccatttttatttaataaatcggATAACGGCTACCAGAAATGAAATT--------ATATCCGCGCTCAAACCTGTACCGGTTT---------------------GCCG-AAAACCGAGGCCCGATTGCTCATTT-AGCCTCGACGGCGAAAAA-----CTTG-TTTACGATAAAATGGCTCTAC
i caeJap4.Scaffold18213 C 0 C 0

a score=8688.000000
s ce10.chrX              2476927 31 + 17718866 AATC--CCTTGCACTATTGTTGGCGG-GCGGAG---A
s caeRem4.Crem_Contig15    68148 33 -  1794024 AATC--CTCTGCACTATTGTTGACTA-GGCGGCACa-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91220 30 +   484378 AATC--CTATGCACTATTGTTGACGC-GCTGAC----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208166 30 -  4147112 AATC--CTATGCCCTATTGTTGGCGC-AGTaac----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   208056 33 +   720316 AATCCTCTCTGCCCTATTGTTGATGCTAACAAC----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17222613 23 - 21540570 I

a score=90037.000000
s ce10.chrX              2476958 116 + 17718866 AAAAAACCAGA---AATACTTTT-----CTATGAAACATATATGA---TCATAATCTTTATTGTA------TGTGTTATACACCACCGCGTATCATTAAGCCGGAC-AAGCAACATGTGAGTTGCC-GCAAAAAA
s cb4.chrX              17222636 120 - 21540570 AAAAAACCAGA--------AGct-------atgaaacatttttgaatccaaTAATCTTTATTGTATGTATTTGTGTTATACACCACCGCGTATCATTAAGCCGGACAAAGCAACATGATCGTTgccaataaaaaa
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig15    68181 116 -  1794024 aaaaaaCCAGA---TCTAGAGTT-----GAATGTTACATTTCTGA---TCGTAATCTTTATTGTA------TGTGTTATACACCACCGCGTATCATTAAGCCGGAC-AAGCAACATGATAGATGtc-gcaaaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91250 116 +   484378 AAAAAACCAGA---CCTAGGTTTC----gaatgaaacatttc-ga---tAGTAATCTTTATTGTA------TGTGTTATACACCACCGCGTATCATAAAGCCGAAC-AAGCAACGTGATATATGtc-gcaaaaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208196 120 -  4147112 aaaaaaccagaattacCATGTTTC----GAATGTAACATTTCTGA---TCGTAATCTTTATTGTA------TGTGTTATACACCACCGCGTATCATTAAGCCGGAC-AAGCAACATGATATATGtc-gcaaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   208089 116 +   720316 TAGAAACCAGA---AAAACTATTCAATTTCATGTTAAACTTTTGA---TCATAATCTTTATTGTG------TATGTTATACACCACCGCGTATCATTAAGCCGGAC-----AACAT-AGAGATGTC-GCAAAAAA
i caeJap4.Scaffold18213 C 0 I 1001

a score=-11842.000000
s ce10.chrX              2477074 164 + 17718866 AAGCGAATAA-------------TTGAATTATTTTTCAGATTACTATGTACATTGAAACAACCTTTGGCAGAGGGAAAT--------TCTTAGACG----ATTTCCGATATTTTTCT----------------AGAGA--------------TATCTGAAATTCAAGGGATGAAAAATAAGGAATAACTTCTCATGAAGA-----------------AA--CTCACCA--AGATAATAAA
s cb4.chrX              17222756 172 - 21540570 ---tgaatgg-------------atAAAGTG--TG---------TATGTACATTCgaaggt---ttgaaaaaatggact--------taTCTT-------CTATTCGAAAGATTTCTATATAGATAGATAGAGAGATATACATAGCGT----CATCTGAAA-----------GGAAGTGAGATTCGATTTT------ATATTCAAAAGATCAGAAATAA--CTcacaacaaaatgaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68297 165 -  1794024 ---tgaaaaa-------------aaaacgtgtaTA---------TATGTACATTCATGagta--ttagaaaaaagaaga--------tgtgtTATTTGAACTATCCGGTAGATTTCT----------------AGATTCTCATAGagt----catctgaa--------------aaatcaaacacaACGTTTCA-GAAtgtt--aaaaatcagaaataa--cTCACCAC-ATATAAAACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91366 163 +   484378 ---tgaatgg--agaATATGGGAAAGAAGTGTGTA---------TAAGCCTATGTACactga----gaagaaaaagaatgggaCAACGATCAG-------CTAACCGATAAATTTCT----------------AGAAGTAC-----------CATCTGAAA-----------GGAGAT--------ATATtcctcaaaaatccaaaaaat----gaaaa--ctcactaaaaatcaaaata
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208316 173 -  4147112 ---tgaatggataaaaaacgaaaaaaagatgagtg---------aATGCATATGTacaagaaa-ttggaaaaaaggaat--------aatcCG-------CTAACCGATGTATTTCT----------------AAAGTCATGAAGACGCGCACATCT---------------GGAAAC--------ATACTACgtgaaggtttttgaaatctcagaTAACTCTCACCAAAAATTAAAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   208205 1001 +   720316 I

a score=228656.000000
s ce10.chrX              2477238 356 + 17718866 TTCATACCGATGAATCATTAGCAGGGGAATGATGATCGCTTGATGAAGAACAACTTCTTGCTCCTTCAGCTTCCAGGTCAATATTGACGATTCGAATTTCGATACCGGCAGGCATCCTCGACGACGGTTCCTTTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCATACTTTTTTCGCCACTGTGGGCTCAGTCTCAAAA-----TTTGG-GCACTAA----TGA---TTTTC--GGATCTTG------CGACGACAACTCATAG---------------AAATCATAGTC---TTACAAC----AAAACAATATGATCAACAC-AGAAGCTAAGCTTCGAATTCCGAAATAAAATGGACGACGCAGCGCAAGCAATACGACAATGCAAATGAA------AAA-
s cb4.chrX              17222928 339 - 21540570 ttcaaactgatGAATCATTAGCAG------GATGATCATCCGACGAAGAACTACTTCTGGCTCCTTCGGCTTCCAAGTCAATGTTCACGATTCGAATCTCGATTCCAGCCGGCATCCGGGACGAGGGTTCCTTTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCAGACTTTTTTCGCTACAGTGGGCTCagtctcaaaa-----actatggCGCt------ttt---tttAA--TGATTGCA------TGACtacaaatcaaaa------atcgaaaataaata--aatgatctcacaacagaaaaa--aatatggtC-ACAC-ATAAGCTAG--------------------------GACGCTGCTCAAGCAATACGACGA-AATAgtgctttcaaaaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68462 341 -  1794024 TTCAAACTGATGAATCATTAGCAGGTGAATGATGATCATCTGATGAAGAACAACTTCTTGCTCCTTCTGCCTCCAAATCAATGTTGACGATCCGAATTTCAATTCCAGCTGGCATTCGAGATGACGGTTCCTTTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCATACTTTTTTGGCCACAGTGGGCTCAGTCTCAAAA-----TTTAt-gctctaa----ttt---tttaaactgttt---------tgGCTTGAAATCAAAAACGTATATCGTAA--AAATC--AATG---TCACAAC----AAA--AATATGGTC-ACAC---AAGCTAT---------------TTGAA----ACGACGCAGCTCAAGCAATACGACGA-GTTGATgct------aaa-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91529 332 +   484378 ttcacACAGATGAATCATTGGCAGGAGAATGATGATCATCTGACGAAGAGCAACTTCTTGCTCCTTCTGCTTCCAAATCAATGTTGacaattcgaatttcaatgCCAGCTGGCATCCGGGACGACGGTTCC-TTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCATACTTTTTTAGCCACAGTGGGCTCAGTCTCAAAT-----TTAGC-GCtcaga-----------taaa--aaatttga------taactACGAAGAATCA------Gtgcgaa--aaatg--aatc---tcaCAAC----AAA--AAGTCGATC-ACAC-ATAagctaa-------------aaatgaa----acgacGCAGCGCAAGCAATACGACGA----GATGCT------AAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208489 352 -  4147112 TTCATACTGATGAATCATTAGCAGGTGAATGATGATCGTCTGATGAAGAACAACTTCTTGCTCCTTCAGCTTCCAAATCAATGTTCACAATTCGAATTTCGATTCCAGCGGGCATACGGGATGATGGTTCCTTTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCATACTTTTTTAGCCACAGTGGGCTCAGTCTCAAAT-----TAAGG-GCTTAGagtaattt---tttag--aaactagAAATCACTTgctacgaaaaaaaaagtg--gtgcgaa--aaatg--gatc---tcacaac----aaa--aatatggtc-acacaaaaagctaa-------------aaTTGAA----TCGACGCAGCGCAAGCAATACGACGA----AGTGCt------aaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   209206 343 +   720316 TTCAAACTGACGAATCATTTTCTGCACATTGATGGCTTTCTGAAGAAGAGCAACTTCTTGCTCCTTCCGCTTCCAAATCGATATTCACAATCCTGATTTCGATTCCAGCCGGCATTCTCGACGATGGCTCCTTTTTAAATCGTCGCATTGTTTGGCGCGTCGTTGACCACACTCTTTTGGCCACTGTGGGCTCAGTCTCAAAAAGTTTTGAGA-CTTCTAA----TTTGGGTTTTT--AAATGGAA------CTATcaagaatcaaaa------at---aa--aaaga--aaag---tcACAAC----AAA--A----GGCC-ACAC----AGTTTG----------TGCATCTCAA----ACGACGCAGCGCAAGCAATACGATGAGGCTGAATCa------aaaa
i caeJap4.Scaffold18213 I 1001 I 146

a score=-2119.000000
s ce10.chrX              2477594 23 + 17718866 TCAGGTGTAA-GAT---TCTGAAATCA--------
s cb4.chrX              17223267 32 - 21540570 tcaaggaaaatgacacatctgaaatc---aaaatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68803 34 -  1794024 tcaaaaaaaa-aacaaatctgaaattaagaaaata
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91861 21 +   484378 TCAAAT-----GATATATCTGAAATC---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208841 14 -  4147112 tca-------------atctgaaaaca--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   209549 146 +   720316 I

a score=530.000000
s ce10.chrX              2477617 13 + 17718866 AAT-TGTCTACAAC
s cb4.chrX              17223299 14 - 21540570 aatacttgtacgaa
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15    68837 13 -  1794024 aat-CAGCTACAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91882  9 +   484378 -----GGCTACAAC
i caeSp111.Scaffold582  C 0 I 55
e caePb3.Scfld02_0       3208855  0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I

a score=-188.000000
s ce10.chrX              2477630 246 + 17718866 AAAAATTTCTATACACCAC-----------TCTGAAAATAATTGTTGA------------GAGAAAAGTGAGGTTTTAAA--------CTTAAATCAA-----------AGTTCCAAAATTAGGGTTCAGCGC-------------------AGATTTGTTTT-------------GGTC-----GACGAGTTTTAA-----AAAAAAATTGGTGAAAACTGTGTTCCCCGCTTTTTGACTTGAAATTAAAAATTTCAAAAGCTTTAAAAAGTTTTATTATGAAAATCGGTCATTTTAGCACCGTGAAAAGTTCTCCCTCTTAACGGTGG
s cb4.chrX              17223318 309 - 21540570 aaaaaatcatagatGCTACAACGTAGGAAATGTGGAATCACttgttaaatttgaaattttgaaagaagtgaattttttaaaaaacgtttttaattcaaaaaaaatgtggaatttcACTATCA---TACAGTACCCGGCAAATATATATACAAAAACTTGTTTTCCTGTtgaatttcagtcattttgaccattttcagtagtCTAAAGCATATATGGgaa----gtttccatttttttg-----------aaaatttcaaagagtgtaaaacagaccaatattgaaaatattca---cagaatttttgaaagttcccagtttttcaggtaa
i cb4.chrX              I 5 I 162
e caePb3.Scfld02_0       3208855   0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e caeSp111.Scaffold582     91891  55 +   484378 I
e caeRem4.Crem_Contig15    68850   0 -  1794024 C

a score=0.000000
s ce10.chrX              2477876 124 + 17718866 AGCAGATCCAATAAGGAAATTGCTTTAAAATTTTCATGAAGTGCAATAAAATAGTACGCCTATCCAAAAATGGTGTATCGTCTTAGTTACGGTCTAGTAGTTGGGCAATTATTTTATAACATAT
e caePb3.Scfld02_0       3208855   0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e cb4.chrX              17223627 162 - 21540570 I
e caeSp111.Scaffold582     91891  55 +   484378 I
e caeRem4.Crem_Contig15    68850   0 -  1794024 C

a score=286.000000
s ce10.chrX              2478000 175 + 17718866 GTTTTCTAATATTCTA---AAATTTTTTGAACTGTGACGTTGCTGCAATA-----------CTTTTGAAATGCTAAAACTAATTAGATTTAGTCAATTTGCCTGAACTTCGAGTAAAAATTCAAAACTTCTAAAAATTGAATGGTTAGTTTAATGGTAAGGTGTATTTAAACTCATTGGCGGTGTTCCA
s cb4.chrX              17223789 167 - 21540570 GTTTCCCAACATCCAATATCAGTCCCCCAACATCCAATATAGCTTCAACAAAAAAGGATGCCCTTCAAAATATggcaaatagctaaaaaaaactaa-------gaactt----------tccgaaaattctgaaagtgcAAT-----ATTTTTTATCTAGATACGTTTGACAccattcaaagttttcga
i cb4.chrX              I 162 I 86
e caePb3.Scfld02_0       3208855   0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e caeSp111.Scaffold582     91891  55 +   484378 I
e caeRem4.Crem_Contig15    68850   0 -  1794024 C

a score=0.000000
s ce10.chrX              2478175 88 + 17718866 CCCTTACATAAATGTGACCCTTTTTGTCGTTAATAGGCTTTACTTAAGCCTAAAAATTCAAATCAATTTCACGTTTTAATTAAGTTGT
e caePb3.Scfld02_0       3208855  0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e cb4.chrX              17223956 86 - 21540570 I
e caeSp111.Scaffold582     91891 55 +   484378 I
e caeRem4.Crem_Contig15    68850  0 -  1794024 C

a score=118.000000
s ce10.chrX              2478263 61 + 17718866 AATTTTTTAAAGAA----ATTGAAAACGTATTGGAAAATTATTTCAGGTTAGGTATGCTACACAA
s cb4.chrX              17224042 54 - 21540570 aatattttactgACTTGTATTGtaaacgaataaaaaa--------aaatcataattgcTAC---A
i cb4.chrX              I 86 C 0
e caePb3.Scfld02_0       3208855  0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e caeSp111.Scaffold582     91891 55 +   484378 I
e caeRem4.Crem_Contig15    68850  0 -  1794024 C

a score=1324.000000
s ce10.chrX              2478324 9 + 17718866 ATATCTAAA
s cb4.chrX              17224096 9 - 21540570 ACGTATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68850 9 -  1794024 GTGTATAAA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3208855 0 -  4147112 C
e caeJap4.Scaffold18213   209549 146 +   720316 I
e caeSp111.Scaffold582     91891 55 +   484378 I

a score=-7215.000000
s ce10.chrX              2478333 49 + 17718866 ---TTTAAAACATTTTCCAATAAAAAATTACTATA--AAAAAAAGTCAAGTAAC-----------
s cb4.chrX              17224105 58 - 21540570 ---ATTAAGgagtggaaaatttgaaaatcatttgcGAATTGAAACTTGGAGggcaattgaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68859 40 -  1794024 ---atca-------taacttttgaaaatgatc-----aatatAACTTAAGCGTT------A----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3208855 53 -  4147112 tctacaacataattgaaaaaatcggaatcaT------ATAAAAACTTAAGCCAA------ATAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   209549 146 +   720316 I
e caeSp111.Scaffold582     91891 55 +   484378 I

a score=-3260.000000
s ce10.chrX              2478382 14 + 17718866 AACGATATAAAAGT------------------------------
s cb4.chrX              17224163 44 - 21540570 aaaaattcgaaaattcaaaactcgaTATATTTTCCACTCCcatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68899 14 -  1794024 AATAATCAgagaat------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91946 14 +   484378 Aactatgaaaaatt------------------------------
i caeSp111.Scaffold582  I 55 C 0
s caePb3.Scfld02_0       3208908  4 -  4147112 ----------AAat------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   209549 146 +   720316 I

a score=301226.000000
s ce10.chrX              2478396 621 + 17718866  
s cb4.chrX              17224207 620 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    68913 525 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     91960 521 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3208912 533 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   209695 568 +   720316  
i caeJap4.Scaffold18213 I 146 I 894

a score=-2924.000000
s ce10.chrX              2479017 14 + 17718866 GATGATAGGAACAA-----
s cb4.chrX              17224827 14 - 21540570 aacgtagcaaaaag-----
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig15    69438 14 -  1794024 agagaaagaaacag-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     92481 19 +   484378 cagaggaagaaaagaagag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3209445 19 -  4147112 CGTCGAggataaagaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I

a score=546.000000
s ce10.chrX              2479031 1 + 17718866 A
s caeRem4.Crem_Contig15    69452 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 187
s caeSp111.Scaffold582     92500 1 +   484378 a
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3209464 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17224841 79 - 21540570 I

a score=-1385.000000
s ce10.chrX              2479032  9 + 17718866 TGTTGAAAG-------------------
s caeSp111.Scaffold582     92501  9 +   484378 aatagaaag-------------------
i caeSp111.Scaffold582  C 0 I 148
s caePb3.Scfld02_0       3209465 28 -  4147112 aaaagataggGAAGTGAAGGAGGATAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17224841 79 - 21540570 I
e caeRem4.Crem_Contig15    69453 187 -  1794024 I

a score=-4633.000000
s ce10.chrX              2479041 796 + 17718866  
s caePb3.Scfld02_0       3209493 559 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17224841  79 - 21540570 I
e caeSp111.Scaffold582     92510 148 +   484378 I
e caeRem4.Crem_Contig15    69453 187 -  1794024 I

a score=-644.000000
s ce10.chrX              2479837 10 + 17718866 AAAAACTTCT-
s caeRem4.Crem_Contig15    69640 10 -  1794024 -aaaaatacTC
i caeRem4.Crem_Contig15 I 187 C 0
s caePb3.Scfld02_0       3210052  6 -  4147112 ----ATTCCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17224841 79 - 21540570 I
e caeSp111.Scaffold582     92510 148 +   484378 I

a score=-4197.000000
s ce10.chrX              2479847 26 + 17718866 AAAGAACTATACTAATTTGACGACAT----------------
s cb4.chrX              17224920 32 - 21540570 AGAAAACTATAATAAGA-------ATTTTTGCACACTTT---
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig15    69650 34 -  1794024 AGAGGAGCATTCTAATA-------ACTCAT-TACAATGCCAT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3210058 20 -  4147112 -GAAAATTAGCATAAAT-------ATGC--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e caeSp111.Scaffold582     92510 148 +   484378 I

a score=25864.000000
s ce10.chrX              2479873 216 + 17718866 TGGTGAAAATTGATGCTC-TCAAGTTTTCTTCAAATTTCATGATATATTT----------TTATTTTAGCAACTATACTTCC---TTTGAC--AAGAAAAGCCAATGGAATATA---------TAAAACAAAA---GAATGAGAAAAACACAC-ACAAAAACGTGGCTTGTTTTGTGCACTGTTGCGAGCAAAATTAGATTTTCTTGGATTGGGGTGTCACTTT-GGCAC--------------------------------GTCTTGGTTCCGAAAA
s cb4.chrX              17224952 183 - 21540570 ----GAAAACTGAGATGT------tcttattcaaatttcatatCTGACGCAATAGAAcgaa---------agtcttttttttggctctaag-----AAGAATCAATAAgaaggaaaatttttcaagaaaaagg-------------aaaacaa--------------ggaTTTTGTGCACTGTTGCGAACAAAATTAGATTGAC-----TGGGTGTGTAATTTT-AGC----------------------------------GTCTTCGCTCTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    69684 231 -  1794024 TAAGgaaaattgagcttttttACGTTTTGGTCAAATTTCACATCATACGC----------A---------AGTCACACTTCT---TCAGAG-----TAAACTTGACAGAATCGA-----TTCCCAGAAAAATGgt-gaat----aaaaaacaacagaTATCCGTGGTTGGTTTTGTGCACTGTTGCGAACAAAATTAGATTGTC-----TTGGTGTGTTATTTG-GGCACTGACAGAAACCACCAACTGAAAGAACTAAAAAGTGGTAGAGCAT----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     92658 191 +   484378 TAATGAAAACTGAGCCTC------TtgtcttcaaatttcatatCATACGT----------A---------AGCTAGATTTTC---ATTGAA---------------------GA-----TGGCtaaaatagagaagaaacagaagaaaaacacgaGAAATACGTGTTTGGTTTTGTGCACTGTTGCGAACTAAATTAGATTGGC-----TTGGGGTGTCATTTTCGGGATTCCAT---------------------------GTTTtag-tcagaaaa
i caeSp111.Scaffold582  I 148 I 66
s caePb3.Scfld02_0       3210078 208 -  4147112 TAATGAAAACTGAGATGC------GcctcttcaaatttcatatcATACGT----------A----ATGTCAGCTATACTTCC---TCCGAATGAAAGAAACTTGACGGAATCGG-----TGGctaaaactgagaa-aaactgagaaaaaacac---aaatacgTGTTTGGATTTGTGCACTGTTGCGAGCAAAATTAGATTG---------GGGGTGTCATTTT-GGCATGTCTT---------------------------GTTTTAG-TCGGCAAA
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18213   210263 894 +   720316 I

a score=-4430.000000
s ce10.chrX              2480089 25 + 17718866 GTCTAGAAATGTTTT---------------TTTTTTCAAA-------
s cb4.chrX              17225135 17 - 21540570 ------------------------------TTGTCTTCGTTTTTAAA
i cb4.chrX              C 0 I 776
s caeRem4.Crem_Contig15    69915 10 -  1794024 ------------------------------TTTTCTCAAT-------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3210288 38 -  4147112 GGCC--AACTGGATGAATATGGTGGACTAGTTTTCTTGGT-------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e caeSp111.Scaffold582     92849 66 +   484378 I

a score=215.000000
s ce10.chrX              2480114 14 + 17718866 ----TCACCA----AGTGATAT
s caeRem4.Crem_Contig15    69925 16 -  1794024 CTAGCCTC------TGTGATAC
i caeRem4.Crem_Contig15 C 0 I 15
s caePb3.Scfld02_0       3210326 18 -  4147112 ----TCTCGAGGAGTGTGATAC
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17225152 776 - 21540570 I
e caeSp111.Scaffold582     92849 66 +   484378 I

a score=-6030.000000
s ce10.chrX              2480128  84 + 17718866 GGAATACTTAGGTAG-----ATGTGAATTTGTGATTTG---AC----------------TGGTGTTTGATA--TTTGAGAAGT-------------TTGATCAAAAAAAGTGTTGAGAATTGT---------------------------------------------------------
s caeRem4.Crem_Contig15    69956 137 -  1794024 AGAATAGTTGAGTACggaatttatgaatttttaatctgaaaac-----gaGATATGTCATGATTCTTGATG--TTCAATCCATCATTTTGTTACTTTTACACG-------------GAATTTTACA-----------------------AATATGAAGTAACGGGGTGTTCTCTATTCAG
i caeRem4.Crem_Contig15 I 15 I 19
s caeSp111.Scaffold582     92915 132 +   484378 AGAATACTTGAG--------TATTGAATATTTCATGTGAAAAC-----CAGATATACTTTGATTTCCGATG-TTTTGATCATTta-----------taaaacatgaaaaaatccACGAGATGAAGAAGCCGTtc---------------acaaagaaaagaaatggggAACT--------
i caeSp111.Scaffold582  I 66 C 0
s caePb3.Scfld02_0       3210359 147 -  4147112 AGAATACTTGAGTA------TATTGAATTTATAAtgtcaaaacgaaaaaagaaatggctcgatttttgatgtttttgatcaATCG-----------TGAAACAAAAGG--------GAACTTCAGAAGATGAAAAGCGCCGTTctcaggaagaagaagaaaaaggaatagcT--------
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I
e cb4.chrX              17225152 776 - 21540570 I

a score=71813.000000
s ce10.chrX              2480212 405 + 17718866  
s cb4.chrX              17225928 400 - 21540570  
i cb4.chrX              I 776 C 0
s caeRem4.Crem_Contig15    70112 401 -  1794024  
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582     93047 399 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3210506 412 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   210263 894 +   720316 I

a score=67569.000000
s ce10.chrX              2480617 59 + 17718866 G------ACCAAAAGTATGCATCAAGCTTTTCCGTCGATTGTTTTGATGATTGCCTCTTGAAAGA
s cb4.chrX              17226328 65 - 21540570 ggaccCCACCAAAAGTGTCCATCAAGCCTTTCCGTCGATTGTTTTGATTATTGCCTCTTGAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    70513 58 -  1794024 G------ACCAAAAGTGTCCATCAAGCC-TTCCGTCGATTGTTTTGATTATTGCCTCTTGAAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     93446 59 +   484378 G------ACCAAAAGTGTCCATCAAGCCTTTCCGTCGATTGTTTTGATTATTGCCTCTTaaaaga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3210918 58 -  4147112 G------ACCAAAAGTGTCCATCAAGCC-TTCCGTCGATTGTTTTGATTATTGCCtcttgagaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   211157 59 +   720316 G------ACCAAAAGTGTCCATCAAGTTTATCGGACGATTGTTTTGATTATTGCCTCTTGAAAGA
i caeJap4.Scaffold18213 I 894 I 24

a score=-5204.000000
s ce10.chrX              2480676  6 + 17718866 ATGG---------A-A
s cb4.chrX              17226393 14 - 21540570 AAGGCAGCACCACA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    70571  5 -  1794024 GTGA---------G--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     93505  5 +   484378 atga---------g--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3210976  6 -  4147112 aaag---------aa-
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold18213   211216 24 +   720316 I

a score=4112.000000
s ce10.chrX              2480682 24 + 17718866 ------AGCTGCCGC---ATTTTCAAGGAAGCA
s cb4.chrX              17226407 27 - 21540570 ------AGCTTCCACTCTTCTTTTTAAGAAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    70576 27 -  1794024 ------AGCTTCtgctctctttttttggaaaca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     93510 33 +   484378 agatgTAGTTTTCCCTActtattttggaaaaca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3210982 80 -  4147112 I
e caeJap4.Scaffold18213   211216 24 +   720316 I

a score=-11700.000000
s ce10.chrX              2480706 64 + 17718866 TTCTTATTTATGTGCC---------GGTGGTTATCTGTCATTCAGGCATAAT-TTCAT------ACAAATTTATGCAGAG
s cb4.chrX              17226434 46 - 21540570 --CATAAT-------------------------------ATTCacacaaaatatttat-aaagAATAATTAtgtgaaaaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    70603 66 -  1794024 --caTATTTgtgg------------tgtttttttttatgaatgaataaaaatacataTCAAATTATAATAATATTGAGAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     93543 49 +   484378 --cacacg-----------------------tttttggttttcatacaatttatttct------ttcattttatagaaaa
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   211240 74 +   720316 TTCTTCTCTCTACACCattttttcttgcatattttttccaaaaacgtgaggtttttct------gattttttattcaaag
i caeJap4.Scaffold18213 I 24 C 0
e caePb3.Scfld02_0       3210982 80 -  4147112 I

a score=114287.000000
s ce10.chrX              2480770 189 + 17718866 -TTGAAAATTGAGATTAGGAGTATGGCAATTAGAGTGAGAGAAGATGATGATG---ATGA------TGCAGAGTTATGACGCCATGGATCTTGCCAAGGGTACTTTGGGGGTTTCGGTGGCTCGTCATGACGCCCGATTTGATCAATTTTGCAGCAATTCAGGCCACAGCAGTACTCTTGATATCGTTGGCACCTG--AAA
s cb4.chrX              17226481 185 - 21540570 -ttgaagacAGAAATTATAATTATGGCA--------AAGGGCAATTG-TGAAGAACAGGA------TGCAGAATTATGGTGCCACGGGTCTTCCCAAGGGTATTTAGGCGGCTTGCGAGGATAGTCGTGACGTCCAATTTGGTCAATTTTGCAGCAATTCAAACCGCAGCAGTACTCCTGATATCGCTGGCATCtggaaaa
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig15    70670 171 -  1794024 ----------GAGGTAATAATTATGGCA--------GATAAAATGTG-TGAAG---ATGA------TGCGGAATTATGATGCCACGGATCCTCCCAGGGGTATTTTGGAGGTTTGCGTGGCTCCTCATGCCGGCCAATTTGGTCGATTTTGCAGCAATTCAGACCACAGCAATATTCTTGATATCGTtgacatctg--aaa
i caeRem4.Crem_Contig15 I 1 I 1
s caeSp111.Scaffold582     93592 180 +   484378 -tagCAGAATAAAGATACAATTATGACG--------GAAAGAATATC-TGTTA---ATGA------AGCCGAATTATGATGCCATGGATCTTGCCAAGGGTATTTAGGAGGCTTTCGTGGAGCATCATGTCTTCCAATTTGATCAATTTTGCAGCAGTTCAATCCACAACAGTATTCCTGATACCGCTGAcaccta--gaa
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3211062 180 -  4147112 -ttaaacattgAAATGATGATTATGGCT--------GGAATGAAGAA-CGAGG---AAGA------TGCAGAATTATGATGCCATGGATCATCCCAAGGGTATTTTGGAGGCTTTTTCGGAGCGTCGTGTCTTCCAATTTGGTCGATTTTGCAGCAGTTCAAACCACAACAATATTCTTGGTACCTTTGGCacctg--aaa
i caePb3.Scfld02_0      I 80 C 0
s caeJap4.Scaffold18213   211314 187 +   720316 tttttACATTCTAAGTATCAGTATCAAA----AGGTAAAATAACAT--TGAGA---ACGAACGACGTGCCGA--CATG-TGCCACGGATCCTGCCATGGATACTTTGGAGGTTTTCTCGGTGCATCGTGCCTTCCAATTTGATCCGTTTTACAGCAATTGAGACCACAGCAGTATTCCACGTAGCGTTGGCACCTG--GAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-829.000000
s ce10.chrX              2480959 1 + 17718866 -T
s caePb3.Scfld02_0       3211242 1 -  4147112 -t
i caePb3.Scfld02_0      C 0 I 377
s caeJap4.Scaffold18213   211501 1 +   720316 A-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17226666 1 - 21540570 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70841 1 -  1794024 I

a score=-3938.000000
s ce10.chrX              2480960 37 + 17718866 ------TGT--ATAATTGAA-----AAATCACAAGCTTCCAGAA-----CACATT
s cb4.chrX              17226667 33 - 21540570 ------catcaaaaattggga-tttaAAATA----CTTTCGAGA-----------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15    70842 35 -  1794024 ------cattgaaagttgaa-----aaatta----tgttcagaa-----aatatt
i caeRem4.Crem_Contig15 I 1 I 238
s caeJap4.Scaffold18213   211502 51 +   720316 TCGGCATACTAATTATTGTTATTTTGGTCTA----TCTTCAAAAACGTGCACATT
i caeJap4.Scaffold18213 C 0 I 26
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeSp111.Scaffold582     93772 37 +   484378 I

a score=-1963.000000
s ce10.chrX              2480997 69 + 17718866 GTTTTCTAAGT-TTCAAATTTTC------TACAATTTTTCG---AAATTTTTAACTGAAAGCAATGCCACACTCTAA--AA
s cb4.chrX              17226700 62 - 21540570 ---ttctaa---ttaaaattttcgctg--tgcatatttcag---aattttttaaat--------ttcagaattctgatgAA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   211579 79 +   720316 GTTTAATGAGCATTAAAATTTATGGGagttgttttttctcgtgtagttgttttgggaaaagctatgtttttcattaa--ag
i caeJap4.Scaffold18213 I 26 I 28
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-275.000000
s ce10.chrX              2481066 15 + 17718866 CTGAACAGCAATTCT
s cb4.chrX              17226762  9 - 21540570 ATGTACAAC------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeJap4.Scaffold18213   211658 28 +   720316 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-2561.000000
s ce10.chrX              2481081 62 + 17718866 TTTttttgaacgtatagac----------ccaacaaaagcttacaaaaacgaac-------------------------ttcgtaacgaaactttgc
s cb4.chrX              17226771 34 - 21540570 ---TTTTGA-------GAA----------TCGATTGGAAGGGATAAAAACGAAT-------------------------------------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   211686 97 +   720316 ttttctTGGAAGGGCAGAAAGTGAAATTTACAACTGAGAGTTAAGGGGACGGATAATAACTCTATAGTCGCATTGAAGCTTCAAAACTGAACTTCGC
i caeJap4.Scaffold18213 I 28 I 57
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-1400.000000
s ce10.chrX              2481143 54 + 17718866 aaaaattttccaaattatttgtttttattgcggttcaattacggtacatttgaa
s cb4.chrX              17226805  8 - 21540570 ------------------------------------------AGTACGCT----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeJap4.Scaffold18213   211783 57 +   720316 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-3023.000000
s ce10.chrX              2481197 130 + 17718866 actatatgtaggtattcaaaa---ctgacaaaaattagtcacatattgactttaaatgtacctcaattaacaaaatagcgttagataaacgaccaaaatatgcaaaaactgatgataattcaaattagtcatt
s cb4.chrX              17226813  59 - 21540570 -------GTGAACATCAAATA---CT----AAAATAAATCGTATTTTGACT-----------------------------------AAATGAGTAGAAGAT-------------------------AGTCAAC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   211840 122 +   720316 ATTTTATCTagaagttgaaaaaattt----agaatttgtTGTATTTAAAATCTAAATTTTACTAAATAACCAGCAAAGACT-----GATTTATAAAATTAT--AAATATCAATAGTCACTATAATTAAGCGTT
i caeJap4.Scaffold18213 I 57 I 65
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeSp111.Scaffold582     93772  37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=673.000000
s ce10.chrX              2481327 46 + 17718866 ttcggactgctgcgacgcggaaaagtccgctaaaattgagcgattt
s cb4.chrX              17226872 39 - 21540570 TTCAAATCTcta-------aaaaagtggtccaaaatttttcgattt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeJap4.Scaffold18213   211962 65 +   720316 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-5091.000000
s ce10.chrX              2481373 124 + 17718866 ttttttctgaaattttgcactgccattgaaattttttaaaaacaaact---ttgaattgttt-------------cattacgaaatttgtttacttgagcacatttcaggtctatacattcaaaatcgtAAAG--------------------------------------ATCGTGG
s cb4.chrX              17226911  93 - 21540570 tt----cagaaatttttagatcacact------------aaacaaaat---tagcacctttt-----------------------tttgtt--attgacAATAGTTTTG---TGCAAATTCCCCATAGTGAGC--------------------------------------ATAGTGG
i cb4.chrX              C 0 I 414
s caeJap4.Scaffold18213   212027 167 +   720316 ttttttaaaaaatattttgcacttaat------ttttgaaaatataatttcTTGCGCTGGTTTTAACTATGCTGATATTAAGTTATTtgta--ttttaaactttttaaa---tgTTAATATTTAGTCGTCAACCCATATTGATGCGGCCAAATTTGTATTGGAATAGATTAATTGTAA
i caeJap4.Scaffold18213 I 65 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeSp111.Scaffold582     93772  37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-119.000000
s ce10.chrX              2481497 31 + 17718866 CGAG--ACCCACTGATAAAAAC-----------AACGTGTGCCT
s caeJap4.Scaffold18213   212194 44 +   720316 AGGGTAACACACAAACAACACCCACGCCGCACCAGCGTATGCCG
i caeJap4.Scaffold18213 C 0 I 203
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e cb4.chrX              17227004 414 - 21540570 I
e caeSp111.Scaffold582     93772 37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=0.000000
s ce10.chrX              2481528 197 + 17718866 TTAAACTGATGTGCAATTTTTTTTTGAATTCACGTTAGCTTCAGCGATCCaaattattattaattaataataattttattCGTGAAGGTTGTAATATTTTAAAATGTTAATTACACATGTTTTGCATGTTTTACATTATagtgtggaaattgctttaaaacaggcctagggcaccacattggccaaatagcgtagta
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e caeJap4.Scaffold18213   212238 203 +   720316 I
e cb4.chrX              17227004 414 - 21540570 I
e caeSp111.Scaffold582     93772  37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-500.000000
s ce10.chrX              2481725 211 + 17718866 aaaaaaattcaaaaaaattttctaaattttatacgatttttgataattggaacaatc----------------ACAGTTTGTGCTACTTTTATGGAT-GTCATCGATCAAAA-------AAATATTTGAA----GGGTCTCGAA----CACACCACAGGGATTTATGATAACTGTTTTTTTCTTATAAGTGTCAAATTGTTT-ATGAGATTGA--------GTATTTGGGTAACCCTGATTATA-TTGGAAAA
s caeJap4.Scaffold18213   212441 236 +   720316 gaacgggttcggaaaagtattCCGAACTACTTAAAATTCCG---AATGGGaacggttttctttttttttctttactgtTAGTGCA----TTAGGAATAGTGGTTTatcaaaattaattaaaatagtTCACATTCGGATTTCCAAGTAGCccggaataaaattttccga-acccgtt--------aggaattccgaatggtttcatgaatacggccccagaTGTATTCGG-TAATGCTGAGTTTAATCGTAAAA
i caeJap4.Scaffold18213 I 203 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e cb4.chrX              17227004 414 - 21540570 I
e caeSp111.Scaffold582     93772  37 +   484378 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=-1700.000000
s ce10.chrX              2481936 49 + 17718866 -GTGTTAAACTTTCCAGCACTTTTTGTGATTGCTTGTGATTGAGTTGAAC
s caeSp111.Scaffold582     93809 49 +   484378 -gttttgaacttttcaattccttCCGAACAATCATCATATGAAGATTAGG
i caeSp111.Scaffold582  I 37 C 0
s caeJap4.Scaffold18213   212677 39 +   720316 GAATTTACATTTTCTAG----GTACCAGCTATCACCAGCTGAA-------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e cb4.chrX              17227004 414 - 21540570 I
e caeRem4.Crem_Contig15    70877 238 -  1794024 I

a score=1467.000000
s ce10.chrX              2481985 5 + 17718866 AACGA
s caeRem4.Crem_Contig15    71115 5 -  1794024 AACTG
i caeRem4.Crem_Contig15 I 238 C 0
s caeSp111.Scaffold582     93858 5 +   484378 AACGA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   212716 4 +   720316 -ACGA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I
e cb4.chrX              17227004 414 - 21540570 I

a score=1000.000000
s ce10.chrX              2481990 1 + 17718866 G
s cb4.chrX              17227418 1 - 21540570 G
i cb4.chrX              I 414 C 0
s caeRem4.Crem_Contig15    71120 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     93863 1 +   484378 G
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   212720 1 +   720316 G
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3211243 377 -  4147112 I

a score=448687.000000
s ce10.chrX              2481991 878 + 17718866  
s cb4.chrX              17227419 760 - 21540570  
i cb4.chrX              C 0 I 798
s caeRem4.Crem_Contig15    71121 803 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     93864 749 +   484378  
i caeSp111.Scaffold582  C 0 I 47
s caePb3.Scfld02_0       3211620 785 -  4147112  
i caePb3.Scfld02_0      I 377 C 0
s caeJap4.Scaffold18213   212721 723 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-5878.000000
s ce10.chrX              2482869 38 + 17718866 ACAAGGTATATAGT------TTGTTGCGTCCGGAAATTA---------TGGTT
s caeRem4.Crem_Contig15    71924 50 -  1794024 ACAAA---GATGGCTCCATAATATTGTGACCGGAAAAGGGTATTAATTTGATT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3212405 27 -  4147112 ATAAT---------------ACATTTT--ccggaaatga---------tgatg
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   213444 11 +   720316 ----------------------------ACAAGAAACTG--------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17228179 798 - 21540570 I
e caeSp111.Scaffold582     94613 47 +   484378 I

a score=-23289.000000
s ce10.chrX              2482907 103 + 17718866 AGGGTATGAGAAATATGACTCATACTCTCACTTGGATTCTGATTTATTTCGCCCTACTAAAATTGCGAGGAATTCAAATTTGAAAAATGA--------CGTCATGCGGAAG
s caeRem4.Crem_Contig15    71974  87 -  1794024 ATCGTTTATGAGTCATCATTGATATTATCATTATCATCAATGAGCAT-------------AACAACA-----------ATCAAAACATGATACTCATGAAGCCTGCGGATA
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582     94660  63 +   484378 ---------------------ATAGTATCATAACCATGAGTCGATACTT----TTGTTCAAACCACA-----------TTAGAGAATTGG------------CTACAGAAA
i caeSp111.Scaffold582  I 47 I 1
s caePb3.Scfld02_0       3212437  82 -  4147112 ---------------------aTTGTATTGCAGTTAtctaaacgttttt----tttttcaaaaaacacaatgcT----TTGGAACTTTGGAAATTACTCAtcttgaagaaa
i caePb3.Scfld02_0      I 5 I 130
s caeJap4.Scaffold18213   213455  20 +   720316 -------------------GAGAAGTCTCGTGAAATTCA------------------------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17228179 798 - 21540570 I

a score=-17260.000000
s ce10.chrX              2483010 113 + 17718866 TTGCGGTTGTTGTAGATCAAACGTGTATACTCTGGAA----------ATTTCACATTGGATCCTTTTAA--------------GTGTCAGATCAGAA-TATTTTCGGTCCACCATATGATCACTGCATCGTTT---TTCAT
s caeRem4.Crem_Contig15    72070 132 -  1794024 CTGCAGTTTCTATAAATCTGGACAACCTTCTCTGAAGCAGTTAAGGCCCTCCATGAAGTATTCTTCTAACCAGTAATGGTTTTTTGGCAGAACAATAGTATTTT--------AATTTGGGAACGACATCTTCT-TATTCAG
i caeRem4.Crem_Contig15 I 9 I 84
s caeSp111.Scaffold582     94724  46 +   484378 -----------------------------------------------------------------------------------TTGcgaaaacatt--tctttt--------aaTATGG--ATCTCATCACCTATAcacat
i caeSp111.Scaffold582  I 1 I 39
s caeJap4.Scaffold18213   213475  37 +   720316 -------------------------TAGAGCCTGGAACAAAGA----------------------------------------TGAACAGAACTGG--TCCTCC-------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3212519 130 -  4147112 I
e cb4.chrX              17228179 798 - 21540570 I

a score=0.000000
s ce10.chrX              2483123 25 + 17718866 AGCTTCCATTTTTCAATCCGAGACA
e caePb3.Scfld02_0       3212519 130 -  4147112 I
e caeJap4.Scaffold18213   213512  0 +   720316 C
e cb4.chrX              17228179 798 - 21540570 I
e caeSp111.Scaffold582     94770 39 +   484378 I
e caeRem4.Crem_Contig15    72202 84 -  1794024 I

a score=216493.000000
s ce10.chrX              2483148 379 + 17718866 TTTTGCCGAA--TTAGTGAATGGAACATTCTTCAGATTGGAAACATCTTCAAAAAAACTTTCGATTATGATACGATAACGATAGGCGGAAAAGTGAAGAGAATGAGAGAT-GCAGATATGTGATAATTTC--TACTTATC-----TTCTCTTGTGATTC--------CTCCCG-AAAAAGGAGATGCATCCGTAAAAGAGGTTAATCGACTACA-----CGTCCTTAACCCATCCTTCTTATTTCTATCCATTTTCCCTCTTCATTTTCCCGACAGAGTACCGCTCC-CTTCAACTACCCCATATTATCACTCAAA-CCCATCT--ACAACATTTTTCATGATTCC---TACAACGACTTTCGTTTCTTGTTACTTTCTAATTTTGTTAGTCTATTTTGCATCAGGTTAG
s cb4.chrX              17228977 347 - 21540570 tttgaaaggaacATTCCTGTCGAAACTTcgtttt---------cacaaa--aaaaaactttcgattATGATAGG---ATGATAGACACAACAACGA--------AGAGATCGCAGACTTGTGATAAATCC--AACttatcttcttttctcttcccaTTCGTTT---CATCCC--GAAAGAGAGGCGCATCCGTTAAAGAGGTTAATCGACTACACACGTCGTCCTCAACCGATCCTTCTT-CATC----------------TCATTTTC-----------GTCTTCC-CCTCC--CGACCCATATTATCACTTTAGCCCCATCCTAACTGCATTTTTGATGGTCTCCTTGTTACCCACTTTCGTTTC---TTACTTTCTAATTTCATCAGTCTACTTTGTATCAGGTTGG
i cb4.chrX              I 798 I 463
s caeRem4.Crem_Contig15    72286 371 -  1794024 TTTCATTGGAATTCTTTTGTAGGAACATTCTTCCGATTGgaaacatctc--aaaaaactttcgatTATGATACGACAATGATAGAcaacaaaaagagagattgGAGAGAT-GCAGACTTGTGATAATTCC--TACTTATC----TTTCTCTTGTATTCCTTCC---CTTCCCGAGAAAAGGAGACGCATCCGTAAAAGAGGTTAATCGACTACA-----CGTCCTCAACACATCCTTCtcgtttc----------------tcattttcccgTCAGAGTACCCCTCC-CATCA--CGACCCATATTATCACTCTAA-CCCATCT--AcagcatttttgatgatttcgtTGTTACCccctttcatttctttttacTTTCTAATTTCATTAGTTAACTATGCAACAGGTTAG
i caeRem4.Crem_Contig15 I 84 C 0
s caeSp111.Scaffold582     94809 367 +   484378 TTTGTCTGGA--TTCATCAAAGGAACATTCTTCCGATTGGAAAcatcccaaaaaaaactttcgattATGATACGATGTCGATagacaacaaaaagagagaattgagAGAT-GCAGACTTGTGATAATTCC--AACTTATC-----TTCTCTtgtattctttct----tttccgaGAAAAGGAGACGCATCCGTAAAAGAGGTTAATCGACTACA-----CGTCCTCAACACATCCTTCtcgtttc---------------ttcattttcccgTCAGAGTACCCCTCC-CTTCA--TCATCCATATTATCACTGCTA-CACATCT--ACagcatttttgatgatttc---gTTAcccactttcattttctgttacTTTCTAATTTCATTAGTCACCCAAACGATAGGTTAG
i caeSp111.Scaffold582  I 39 C 0
s caePb3.Scfld02_0       3212649 360 -  4147112 tttttctgga--tttttcaaaggaacaTTCTTCCGATTGGAAACATctc-caaaaaactttcgattATGATAGGATGATGATAgacaacaaaaagagagaattgagagat-gcagacttgtgataattcc-AAACTTATC-----TTCTCTTGTATTCTTTC-----TTCCCGAGAAAAGAAGACGCATCCGTAAAAGAGGTTAATCGACTACA-----CGTCCTCAACACATCCTTCtcgtttc----------------tcattttcctgtCAGAGTACCCTTCC-CTTCA--CGACCCATATTATCACT-----CAC-TCT--Aaagcatttttcatgatttc---gtTATCCACTTTCGTTACCTTTTACTTTCTAATTTCATTAGTCATTGATGCCACAGGTTAG
i caePb3.Scfld02_0      I 130 C 0
s caeJap4.Scaffold18213   213512 339 +   720316 ------------TTTCCGAACTGATCATTTTTCA---TGGGAACAATCGCCAAAAAACTTTCGATTATGATGAT---ACGACAATTATACAAAATAGATGTGCGAGAGAT-ATAGACTTGTGATAGTTCTAAGACTtatc-----ttctttttcatttcttcttcTCATCCC------AGAAGACGCATCCGTAAAAGAGGTTAATCGACTACC-----CGTTCTCAACACATTCttcttatttc----------------tcattttGCGTCC--ACTACCTTCCCACTACA--CGATCCCTATT-------TAGCCTAAGCC--ACAATA-CTTCGATGATTTC------TGCGACTTTCCTTTCCTGTTACTTTCTAATTTCATTAGTTATCTTCGCATCAGGTTAG
i caeJap4.Scaffold18213 C 0 C 0

a score=-8699.000000
s ce10.chrX              2483527 44 + 17718866 -----CAGTTTGTGATGTTTG-AACACCATTTAATTAGCTTAGA-GTTTGT
s caeRem4.Crem_Contig15    72657 45 -  1794024 -----TGATTTGTGTTTTATGTGTTTGTATATCGACTTCTGAAC-ATCTAT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     95176 28 +   484378 ------AGTTT-TATCTTTTG---------------GTAATAAA-GTTGAT
i caeSp111.Scaffold582  C 0 I 8
s caePb3.Scfld02_0       3213009 30 -  4147112 ------AATTTCCATTTTATG---------------ATTTGAACTGTTTAT
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18213   213851 35 +   720316 CTTGTCAATCATCTTCCGCTA---------------ATTCTAGC-CTTCTT
i caeJap4.Scaffold18213 C 0 I 1
e cb4.chrX              17229324 463 - 21540570 I

a score=70973.000000
s ce10.chrX              2483571 87 + 17718866 TTTTAGCACAAGCTCCAACCTGCCCAAATGGCCAACTACCAAAGTTAGATTCATCGTTAAGACCTCTACAATGTTTGCCAGGTAGTT
s cb4.chrX              17229787 87 - 21540570 TTACAGCACAAGCCCCAACCTGTCCCAATGGCCAACTTCCCGAATTAGATTCGTCGTTAAAGCCAAAACAATGTCTACCAGGTAACC
i cb4.chrX              I 463 I 7
s caeRem4.Crem_Contig15    72703 87 -  1794024 TTCCAGCACAAGCTCCAACATGTCCGAATGGCCAGCTGCCGGAATTAGACTCCTCGTTGAGACCGAAACAATGCTTGCCAGGTAGAc
i caeRem4.Crem_Contig15 I 1 I 7
s caeSp111.Scaffold582     95212 87 +   484378 TTCCAGCACAAGCGCCAACATGTCCGAATGGTCAGTTGCCTAAACTAGATGCATCATTAAAACCTCTTCAATGTCTACCAGGTTATT
i caeSp111.Scaffold582  I 8 I 39
s caePb3.Scfld02_0       3213047 87 -  4147112 TTATAGCACAAGCCCCAACATGTCCTAACGGTCAACTGCCAAAACTAGATGAATCGTTAAGACCACTACAATGCCTGCCAGGTAgat
i caePb3.Scfld02_0      I 8 I 3
s caeJap4.Scaffold18213   213887 85 +   720316 TTTTAGCTCAAGCACCAACTTGTCCAAATGGCCAGCAACCTAAATTAGATTCTCAGTTGAAGCCCATACAATGCCTACCAGGTAT--
i caeJap4.Scaffold18213 I 1 C 0

a score=-8418.000000
s ce10.chrX              2483658 40 + 17718866 GTTATTTTCAGTTCA----CATCCAATATAACA-------------TACTTGTTTTC
s cb4.chrX              17229881 34 - 21540570 ACATT---CAAACA------ATTTATGAGAATA-------------TGCCTTTTTC-
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig15    72797 32 -  1794024 gtgttttccaaACAA----CATTGATTAAAAGA--------------------TTT-
i caeRem4.Crem_Contig15 I 7 C 0
s caePb3.Scfld02_0       3213137 42 -  4147112 atatttttcaaatgaaatctatttaataaaaaa-------------tcaagtttt--
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   213972 49 +   720316 GTATTTTTAAACCCC----TATTTAATCGCAAACATGGAATATGTATACATAT----
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582     95299 39 +   484378 I

a score=181343.000000
s ce10.chrX              2483698 190 + 17718866 AGGCACTTCACAACACTTAATTTGTGGTGCTAATCATAACTGTTTCTTTACCGGATTGAATTATATGTGCTGCCCGTCAAATGAGCCATCCATAGATAATCAACCGAGTTGTCCATACCCAAAGCTAACAGTTTTGGATCCACATGGTTTGCCAATGAAATGTAGTCAGATAGCCAGAAGTTGCCCGGGG
s cb4.chrX              17229915 190 - 21540570 AGGAATGTCAGAAAATCTGATGTGTGGTCCGAATCACAACTGTTTCTTCACCGGTCTCAACTACATGTGTTGTCCTTCCAATGAGCCATCAATCGATAATCAACCAAGTTGTCCATACCCAAAACTGACTGTACTGGATCCACATGGATTACCATTGAAGTGTAGCCAGATAGCCAGAAGCTGTCCAGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    72829 190 -  1794024 AGGAACATCGGAGAATTTGATGTGTGGTGCCAACCATAACTGTTTCTTCACTGGACTCAACTATATGTGCTGCCCTTCCAACGAACCTTCTATTGATAACCAACCAAGCTGTCCATATCCAAAACTAACCGTTTTGGATCCTCATGGGCTACCATTGAAATGTAGCCAAATTGCAAGAAGCTGCCCAGGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     95338 190 +   484378 AGGAACTTCACAGCACTTGATCTGTGGAGCCAACCATAACTGCTTCTTTACTGGTCTCAACTACATGTGTTGTCCGTCCAACGAACCTTCGATTGACAATCAACCCAGTTGTCCGTATCCGAAATTGACAGTTTTGGATCCTCATGGACTACCTTTGAAATGTAGTCAGATTGCTAGAAGTTGCCCGGGT
i caeSp111.Scaffold582  I 39 C 0
s caePb3.Scfld02_0       3213179 190 -  4147112 agGAACATCGCAGCACTTAATTTGTGGTCCAAATCACAATTGTTTCTTCACTGGACTCAATTACATGTGTTGCCCGTCTAACGAACCTTCGATTGATAATCAACCAAGCTGCCCATATCCTAAGTTAACAGTGTTGGATCCTCATGGGCTCCCACTGAAATGCAGTCAAATTGCTAGAAGTTGTCCGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   214021 190 +   720316 AGGAACATCACAACATGTAATCTGCGGAGCAAATCACAACTGTTTCTTTACTGGGCTCAATTATATGTGCTGCCCGTCAAATGAGCCATCAATTGATAATCAACCCAGTTGTCCCTACCCAAAACTAACTGTTTTGGATGCACATGGTTTGCCTATGAAATGTAGTCAAATTGCAAGAAGTTGCCCGGAG
i caeJap4.Scaffold18213 C 0 C 0

a score=1146.000000
s ce10.chrX              2483888 2 + 17718866 GT
s cb4.chrX              17230105 2 - 21540570 GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    73019 2 -  1794024 GT
i caeRem4.Crem_Contig15 C 0 I 39
s caeJap4.Scaffold18213   214211 2 +   720316 GT
i caeJap4.Scaffold18213 C 0 I 5
e caePb3.Scfld02_0       3213369 0 -  4147112 C
e caeSp111.Scaffold582     95528 0 +   484378 C

a score=1214.000000
s ce10.chrX              2483890 10 + 17718866 AAGTTAGAAA
s cb4.chrX              17230107 10 - 21540570 GCGCTCGAAA
i cb4.chrX              C 0 I 26
s caeJap4.Scaffold18213   214218 10 +   720316 AAATTAGAAA
i caeJap4.Scaffold18213 I 5 I 30
e caePb3.Scfld02_0       3213369  0 -  4147112 C
e caeSp111.Scaffold582     95528  0 +   484378 C
e caeRem4.Crem_Contig15    73021 39 -  1794024 I

a score=0.000000
s ce10.chrX              2483900 768 + 17718866  
e caePb3.Scfld02_0       3213369   0 -  4147112 C
e caeJap4.Scaffold18213   214228  30 +   720316 I
e cb4.chrX              17230117  26 - 21540570 I
e caeSp111.Scaffold582     95528   0 +   484378 C
e caeRem4.Crem_Contig15    73021  39 -  1794024 I

a score=37.000000
s ce10.chrX              2484668 4 + 17718866 TGTG
s cb4.chrX              17230143 4 - 21540570 tatt
i cb4.chrX              I 26 C 0
e caePb3.Scfld02_0       3213369 0 -  4147112 C
e caeJap4.Scaffold18213   214228 30 +   720316 I
e caeSp111.Scaffold582     95528 0 +   484378 C
e caeRem4.Crem_Contig15    73021 39 -  1794024 I

a score=278.000000
s ce10.chrX              2484672 3 + 17718866 TTA
s cb4.chrX              17230147 3 - 21540570 ttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    73060 3 -  1794024 ttt
i caeRem4.Crem_Contig15 I 39 C 0
e caePb3.Scfld02_0       3213369 0 -  4147112 C
e caeJap4.Scaffold18213   214228 30 +   720316 I
e caeSp111.Scaffold582     95528 0 +   484378 C

a score=1326.000000
s ce10.chrX              2484675 3 + 17718866 TAG
s cb4.chrX              17230150 3 - 21540570 tag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    73063 3 -  1794024 cag
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   214258 3 +   720316 TAG
i caeJap4.Scaffold18213 I 30 C 0
e caePb3.Scfld02_0       3213369 0 -  4147112 C
e caeSp111.Scaffold582     95528 0 +   484378 C

a score=332677.000000
s ce10.chrX              2484678 578 + 17718866  
s cb4.chrX              17230153 572 - 21540570  
i cb4.chrX              C 0 I 302
s caeRem4.Crem_Contig15    73066 578 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 21
s caeSp111.Scaffold582     95528 558 +   484378  
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3213369 554 -  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18213   214261 564 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-1929.000000
s ce10.chrX              2485256 15 + 17718866 TTTTGTTTAAAGTTT
s caeRem4.Crem_Contig15    73665  7 -  1794024 TGTTATT--------
i caeRem4.Crem_Contig15 I 21 C 0
s caeSp111.Scaffold582     96089  7 +   484378 -CTTTTTT-------
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3213931  8 -  4147112 TCTTGTTT-------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   214825  6 +   720316 --CAGTTT-------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17230725 302 - 21540570 I

a score=49762.000000
s ce10.chrX              2485271 177 + 17718866 ------CAGCAAT-AACCGATG-TTTCATTTTTTAT-----------GTTTCAGGAAAGGTCCGATTAGACCAGCTCAACGTGTTAAACCATCCGAAGTAGGTGGAAACGCAATGGTTACAAGAACTTGGATACCGAGACAATCCTTCACTTTCCCAACTGTTCCA---ACAACTACG---CAGACTCCAACAAC----ACGACCA
s cb4.chrX              17231027 185 - 21540570 ------CGGTAAT-AATCTACT-CACCATATTTAAT------CGTTAATTTCAGGAAAGGACCAGCTA---CAGCTGTCCACTTGAAATCCGCCGAAGTTGGAGggagtgcgacagtaaccaGAACATGGGTCCCAAGACAATCATTCACTTTCCCAACTCCGCCAACCACAACAACGACAGCGGCTCCAAGAAC----TAGACCA
i cb4.chrX              I 302 C 0
s caeRem4.Crem_Contig15    73672 164 -  1794024 --------------------------TATAAGAAAc------ctattatttcagaaaaggacCCGTTA---CCGTCAATCAATTGAAATCTGCTGAAGTCGGGGGAAACGCTATGGTCACTCGTACTTGGATTCCAAGACAATCATTCACTTTCCCAACTCCACCA---ACAACCACCACTGTCATGCCAATCAC----TAGACCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96096 184 +   484378 ---------------ATCCATGAAAACCGATTTTATCGTGTCTGTTCATTGAAGAAAAGGGCCAATTG---CTGgaaatcatctgaaatccGCAGAAGTCGGCGGAAGCGCAGTAGTAACACGTACGTGGGTTCCAAGACAATCATTCACATTCCCAACTCCTCCA---ACAACAACTTCCCAAATTCCGACCACGA-GAAGACCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3213939 162 -  4147112 ---------------CACCAAG-AAGTCtatattat------tgttatttttagaaaaggaCCACATT---CTATCCAACATTTGAAATCTACTGAA------GGAAGTGCCACAGTTACTCGTACCTGGATCCCGAGACAGTCGTACACATTCCCAACtccacca---acaacaacaactcaAATTCC----------AAGACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   214831 192 +   720316 TTCTCATGATAGTCattttaat-tctttttttttat----ttcaataatTTCAGAAGCGGCCCGTCGT---TCAAAAGTCATGCAAAATCCTCTGAAATCGGAGGAAATGCTGCAGTAACTCGAACTTGGATTCCAAAGTCTGCATTCACGTTTCCAACCGCCCCA---CCAAGCACA---GAAGCGCCGACGACTacaacaacca
i caeJap4.Scaffold18213 C 0 I 53

a score=6607.000000
s ce10.chrX              2485448 11 + 17718866 GTTCCATCAGT
s cb4.chrX              17231212 11 - 21540570 GTGCCATCGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    73836 11 -  1794024 GTCCCATTAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96280 11 +   484378 ATTCCATCTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214101 11 -  4147112 ATCCCatcagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215023 53 +   720316 I

a score=366.000000
s ce10.chrX              2485459 3 + 17718866 TAG
s cb4.chrX              17231223 3 - 21540570 GAG
i cb4.chrX              C 0 I 143
s caeRem4.Crem_Contig15    73847 3 -  1794024 Agg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96291 3 +   484378 TAG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeJap4.Scaffold18213   215023 53 +   720316 I

a score=29.000000
s ce10.chrX              2485462 1 + 17718866 T
s caeRem4.Crem_Contig15    73850 1 -  1794024 c
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96294 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeJap4.Scaffold18213   215023 53 +   720316 I
e cb4.chrX              17231226 143 - 21540570 I

a score=364.000000
s ce10.chrX              2485463 4 + 17718866 ATtt
s caeRem4.Crem_Contig15    73851 4 -  1794024 attt
i caeRem4.Crem_Contig15 C 0 I 37
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeJap4.Scaffold18213   215023 53 +   720316 I
e cb4.chrX              17231226 143 - 21540570 I
e caeSp111.Scaffold582     96295 0 +   484378 C

a score=0.000000
s ce10.chrX              2485467 2333 + 17718866  
e caePb3.Scfld02_0       3214112    0 -  4147112 C
e caeJap4.Scaffold18213   215023   53 +   720316 I
e cb4.chrX              17231226  143 - 21540570 I
e caeSp111.Scaffold582     96295    0 +   484378 C
e caeRem4.Crem_Contig15    73855   37 -  1794024 I

a score=337.000000
s ce10.chrX              2487800 7 + 17718866 CCGCTAC
s cb4.chrX              17231369 7 - 21540570 CTGCAAC
i cb4.chrX              I 143 C 0
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeJap4.Scaffold18213   215023 53 +   720316 I
e caeSp111.Scaffold582     96295 0 +   484378 C
e caeRem4.Crem_Contig15    73855 37 -  1794024 I

a score=496.000000
s ce10.chrX              2487807 7 + 17718866 TCCTCGC-
s cb4.chrX              17231376 7 - 21540570 TCCTCAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     96295 8 +   484378 TCCTCGCT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeJap4.Scaffold18213   215023 53 +   720316 I
e caeRem4.Crem_Contig15    73855 37 -  1794024 I

a score=2073.000000
s ce10.chrX              2487814 7 + 17718866 ATTTTTC
s cb4.chrX              17231383 7 - 21540570 GTTTCCC
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582     96303 7 +   484378 GTTTTTC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   215076 7 +   720316 ATCTCCC
i caeJap4.Scaffold18213 I 53 C 0
e caePb3.Scfld02_0       3214112 0 -  4147112 C
e caeRem4.Crem_Contig15    73855 37 -  1794024 I

a score=-11622.000000
s ce10.chrX              2487821 31 + 17718866 -------GAGTTTTGAGTTT----TCA----------------ATTTTTTTTTCTCTG
s cb4.chrX              17231391 29 - 21540570 -------gagtttcagaag-----------------aaaaatgagcttacTTT-----
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold582     96310 20 +   484378 -------AAGtcgaaaaagt----tgat----------------------ttt-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214112 42 -  4147112 -------gagttttgattGT----TCATAGAAACTCAAGCATTACTCTCATTT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   215083 27 +   720316 TTGTTCTAAATCGCAAATCTATTATTA-------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15    73855 37 -  1794024 I

a score=202163.000000
s ce10.chrX              2487852 448 + 17718866  
s cb4.chrX              17231420 439 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    73892 456 -  1794024  
i caeRem4.Crem_Contig15 I 37 C 0
s caeSp111.Scaffold582     96330 473 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214154 451 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   215110 487 +   720316  
i caeJap4.Scaffold18213 C 0 I 1542

a score=-14222.000000
s ce10.chrX              2488300 88 + 17718866 TGAAT--TTTCTTAGATTT-----------TCATCTTGAAATTCTCGTTACATTTGGCAAAAGCATTATGGAAC----TAAATCTGG-TTACGATTAAAATCTTAT
s cb4.chrX              17231859 71 - 21540570 -------TATTCCATTGTtatgaaaaaacatttgaaaacaaG---CCGG-----------------AACAAAAC----CAGACTTTC-C---GATTGAGATCTTTT
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15    74348 70 -  1794024 -------TTTTCCGCTTCT-----------TTCCATCACGAGTTTCTGG---TTT----------TATTCGAAT----AAGATTTCA-TCAAGATAAAAATCTCGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96803 75 +   484378 TGATCGATTTTCCGGAATT-----------CGGGGGTG----TTTCTCCGctttt----------caatcaaat----aatATCCGG-TTTAGATTGAGATCTTG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214605 82 -  4147112 tgatC--TTTTCCACTTTC-----------TTAAAATGCAAATCTCTTATGTTTT----------CACATATATTCACACTAACCGGATAGAGATTGAGATCTCG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215597 1542 +   720316 I

a score=-8114.000000
s ce10.chrX              2488388 57 + 17718866 ACTTACTG-----AGATAAAAATTTATTTGCTGCTTAGTGTTCTATAGTTTAGTTTCAAATT----------------
s caeRem4.Crem_Contig15    74418 39 -  1794024 -----ATGTTTGCATTCGAAAActt-----------------------cataatttcatttctgacG-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96878 50 +   484378 ACGCCATG-----GAATAAAACCTT-----------------------TTAAGGTTTATTGTTATACTagttgaaatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214687 43 -  4147112 CC-CGATT-----Gtacaaaaactt-----------------------tcattcttcaaatgtttcccagtt------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215597 1542 +   720316 I
e cb4.chrX              17231930 33 - 21540570 I

a score=-5043.000000
s ce10.chrX              2488445 135 + 17718866 TATTTTTCCTTAGAATAAACTATTTTAA---TTCATTTTATTTCACCAAA-CTTACAAATAAATCTACGTTTCC-GGCTAACTTGC----------------AAGTTAAAAAAG-GC---------AAACAACTTGATGGCCGAGTTCTTGTGGCCGAAGTTTTTA
s cb4.chrX              17231963 149 - 21540570 CATTTTTCCTCAT-CTGATTCATTTCC----TTCACttctt-------ca-ttcaaaaataacGCTT-ATTTCCGGGTTGAATCATCGTTTTTCTAGATATGACA-CAACTATT-GCAACACCAGCAAACATT-TCATGGCCGCGCgtcggtggcctaactttctc
i cb4.chrX              I 33 I 43
s caeRem4.Crem_Contig15    74457 142 -  1794024 AATGTTTCAAATG-TTAGAACATTTTCACAGTAAAATTCATGTTAGAAAA-GCCAAAAATAGCATTA-ATTTCC-GGTTGAGTCAT-----------ACTAAAAG-CAAGGAAT-TTCACATGAGAGGGCG-----ATGGCCGTCCCGGAGTGGCCGAAGTTTC--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     96928 125 +   484378 --------------------tattttacgatgaaaattcttttga---aattttgaaaataataaga-atTTCC-GGTTGAGTCAC-----------TGAGAACAATAAGAATTGTTTGCG-----AAACATTGTGGTGGCCGCCTCGTGATGGCCTAGGTTTCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214730 122 -  4147112 ----------------------ttttctaacggaaattgaattca---aa-aggaaaaataatgataTATTTCC-GGTTGAGTCAC-----------CTAAAACGATAAGGAAT-TTTTCA-----TTGCGTTCTCGTGGCCGTCACCTGGTGGCCGAGGTTTCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215597 1542 +   720316 I

a score=3056.000000
s ce10.chrX              2488580 44 + 17718866 AATGAGGACTAA--CTGCTTGGCAGGTAATAAAGGT-ATGCAGTGAA--
s caeRem4.Crem_Contig15    74599 47 -  1794024 ACTGTGGCAGAG--TTTCCTGCCAGGTAAGAATATCTCTGCACACAAAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     97053 43 +   484378 --AGCGGAAGAG--TTTTTGGCAAGGTAATAATTGTTGTGCATCAGA--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214852 45 -  4147112 --AACGGAAGAAGTTTGTTTGCCAGGTAATAAATCTGGTGCATTAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215597 1542 +   720316 I
e cb4.chrX              17232112 43 - 21540570 I

a score=-6061.000000
s ce10.chrX              2488624 124 + 17718866 -CCGTTCTTGTGTGCTCTTTT------TATTGATTTTGTTATGGATTTTTTGATACATAGCATTCGTGTAA---AAATTCCTATATCAAAT---CTTT----------GAAAAACAAATCTTTTTTTT-----------TGTA---AATATTGTAAATGTA
s cb4.chrX              17232155 131 - 21540570 -CTTTTCTTTTGTGCTCACTGCGCttccattgatttttttc---gtcttGTGATGTTTATTA----TGGGA---AAAAcct------aaat---g-------gaaaaaaaaagataaaacgTGTTTTCACTTAGGACCACGAG---CATCTAGTAGATTTA
i cb4.chrX              I 43 C 0
s caeRem4.Crem_Contig15    74647 133 -  1794024 -TGTTTCCGTTGTGCTCCACG------TATTGATTTTCATT---CTTACTTGCTCTTGAACA----CGTTT---AAATTCTTACTCCAAAT---TTTTTAGCGAATAAAAGTaataaatctcattttctattat-----tGAG---AAGATACGAGATTTA
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582     97096 135 +   484378 CCATTTGCTTTGTGCACAATG------TATTGATTGCCGTC---TTGTGATACtaataaaat----aagaa---aaatttc--attctactcgattgtttttagaaaacactAGCAAATCTTATTTATATGTGT-----TAGA---GAGACCGCAGATTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3214897 134 -  4147112 CTAATTTCTTTCTGCTCGAAC------CATTGATTTTTGTC---ATATGTTGCCCAAAAACC----AGCCACgtgactttt--tttctatt---tttcccatataaaacaataataaa----atgTATATTTAC-----TACAAATAAGACTCCAGATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   215597 1542 +   720316 I

a score=42560.000000
s ce10.chrX              2488748 253 + 17718866 ATTAACAT----ATCCTTTTCTT-CTTTCTTCCTGCTCTGACTT-----------------------GTTGT------TC-CACATTAGAATATTCATCATGTGGCC--------CGAGGGGACCTTATTGATTTGGTGGCGTTTC-----------------------------------TCTTCCCGCTCGTT---------GCGTGCACGTCTGTCCC-TATTACGCTCTATCTGCCTCGTCCTC-TCCG--CCCGCGCTTCCAAATGGA-GCCTTCTTC------------------TTGCTCTTG--CAATTCATTTTTC----------ACCCACGTCATCCGG-------CTGTGTTG---CTCTTTTTTTTGCTTCT
s cb4.chrX              17232286 297 - 21540570 ATTAGAAATTG-ttcatcttcct--cttctctttctgttttcttctCCCGTCTTGTCTTGCGCA-ATGTTCC------TCACACATTAGAATATTCATCATGTGGtccgagagagagagggacCCTTATTGATTCGGA---GCGTCCTTgccttctttctctctctttccctCTCTAGCTTTTTTCCTGCGCAAT---------GCGCGTTGTATGGGGCCGTATTACGCTCTATCCGCCTCG------TTTG--CCCACG----------------------------------------CCTTACTCG-CCCATTCATTTCTCTACGAAACCACCCCACGTCAT-----------TTTTGTTG---CTCTTGGTT---Cttct
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    74780 266 -  1794024 ATTAGGAA----ATCACTTCCCTGCCTTCTCGTCTTGTTGTCT------------CATTGCGTAGACGTTGT------TC-CATATTAGAATATTCATCATGTGGCC--------GGAGGGTCCCTTATTGATTTGGT---GCGCC-----------------------------------TCTTCTCTCGCAGT---------GCGTGT------GTGCC-TATTACGCTCTATCCGCCTCAGCCTCTTTTG--CCTACGCTTCCATTTGGAAGCAGTCATC--------AGTGAGC---CCTTACTCG--CTATTTATT-----------CTAACTCACGTCATTTAAAGTA---TTTCAACG---GTCTTTACG--ACTTCT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582     97231 277 +   484378 ATTAAGACTTGTGGTTTTCTCTC--ATCGTTGTTTTCTCG--TT-----------GCGTGGATGGACGTTGTGTTCCATC-CACATTAAAATATTCATCATGTGGCC--------TGAGGGGACCTTATTGATTTGGT---GCGTC-----------------------------------TCGTCTCGCGCAGTG--------GGGTGT------GTGCC-TATTACGCTCTATCCGCCTCAGCCTCTTTTGC-CTTTCGCTTCCAAATGGATGTAGTCatcagagagagagagagagagccaCACGCGccccattcattttttc---------acacACGTCA------------TTTCAATG---CTCTTT------TTCGT
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3215031 276 -  4147112 ATTAAGATTCGTATCTTCCTCCT--TCTCTCGATATGTCGTCTT-----------CTTTGCGAGAGCGTCGTGT----TC-CACATTAGAATATTCATCATGTGGCC--------GAAGGGGACCTTATTGATTTGGT---GTGCC-----------------------------------TCGTCTCGCGCAGGgttttgtgtgtatgt------gtgcc-TATTACGCTCTATCCGCCTCGGCCTCTTCCTCGCCTACTCTACCAATTGGATGCAGTCATC--------AGAGAAAGAGCTTTACTcg--caattcatttttt----------actcaCGTCA------------TTTCGATATATTGCTTT------TTTGT
i caePb3.Scfld02_0      C 0 I 43
s caeJap4.Scaffold18213   217139 230 +   720316 ATGAATAT----Gtcttgttttt------tctatttattgataC---------------------ATTTCCC------TC-TTTATTAGAATACAT-TCTTGTGGTC---------AAGCGGACCTTATTGATCTGAC---ATGCC-----------------------------------CCTCTTCCCTTTTC---------------------CCTTC-TATTCCGCTCTATCCGCCTTCGCCTC-TTCGCTCTTTTCTCCCCAAACGGAGGG-------------------------CCTTGCTTT--CAATTCATTTTTC----------ACCCACGTCATCTGGACTGCTTTTTCCATC---CTCTTG------CTCTT
i caeJap4.Scaffold18213 I 1542 C 0

a score=-15559.000000
s ce10.chrX              2489001 48 + 17718866 --------------GGACTAACCGTCAACT-TTAATGAATACTTCTTACAGG---AAAAAAATAAA-----
s cb4.chrX              17232584 36 - 21540570 --------------tattcattttttaaa------------cgttttccaggtttaaaaaaa---------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15    75047 26 -  1794024 --------------AGCTTATTTT-------------------TATTACAGG---AAACAAA---------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582     97511 38 +   484378 --------------AGCTTCGCTTTGAAAT-TC--TAATGGcgtttttccag---aat-------------
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   217369 64 +   720316 CCGTTAAAGTCTTTTGCCATTCATTTAATTattattccgttttttttttttg---aagaaac----gTCAC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3215307 43 -  4147112 I

a score=44835.000000
s ce10.chrX              2489049 136 + 17718866 CCAAAAACAAAAGGAAA--AAAAATTGAAAAAAAATGGGTGCTCAGGGTAGCAGAGTGGATTTTAAGCAAGTTGTACTAGATGTGACGTCCAAGCCGGGAAAAGTTAGT---------------------TTTGAATCAA---AAGTTTTCAAAAAGTGAAA
s cb4.chrX              17232620 119 - 21540570 ---ccaaaaa---------aagta--------aaatgggAGCCCAAGGTAGTCGTGTGGATTTCAAGCAAGCCGTTCTGGATTTGACATCAAAGCCGGGCAAGGTGAGTagcaa----------------attttttcga---gaatgagaagaaaac----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    75073 139 -  1794024 ---CCAAACAGTGATATTTAAACA--------AAATGGGAGCTCAGGGAAGTCGAGTGGATTTTAAGCAAGCTGTTTTGGATTTGACCTCTAAACCGGGAAAAGTaagtcaaaaaaataaatgtaactacatttgtctga---aaatgagcaa---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     97549 132 +   484378 tcgCAAACAAGAGGT----AACAA---CTAGGAAATGGGAGCTCAAGGTAGCAGAGTCGATTTCAAGCAAGCCGTTTTGGATTTGACTGCTAAACCTGGAAAAGTGAGT---------------------TGATCTCTAATTCAGACCAAAAATAACA--AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3215350 135 -  4147112 CTGCAAACGAGTggtac--aaaaa---aacaaaaatgggagCTCAAGGGAGCCGAGTAGATTTCAAACAAGCTGTGTTGGATTTGACTGGGAAACCAGGAAAAGTAAGTTATC-----------------TGATAtctaa---aaattatgaaaaaac--at
i caePb3.Scfld02_0      I 43 C 0
s caeJap4.Scaffold18213   217433 120 +   720316 ----CAGTAAGCgga----attga---ttgaaaaatgggAGCCCAAGGTAGCAGAGTGGATTTCCGGCAAGCCGTTATGGATTTGACCTCAAAACCTGGaaaggtaaataa-------------------ataaatttta---aaattttaaa---------
i caeJap4.Scaffold18213 C 0 I 683

a score=-18967.000000
s ce10.chrX              2489185 69 + 17718866 CTATTGCAAATACTGGAACTTGTATATATTCC------------TCGCCTT--TAAATATTACCAATTTTGAAATTTTTAAGC
s cb4.chrX              17232739 24 - 21540570 ------tAGGGCCGAAatgt------------------------tcatttt--aaa---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    75212 20 -  1794024 --------------------------------------------ccatttt--aaaaaaagcatAC-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     97681 50 +   484378 CAAAAGTAAAGACTAATTTTTG----------------------TTGTCGT--ATGGAAATATTATTTACAAAC---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3215485 72 -  4147112 caaatgttttgaaaaaattctgta-aTACTGTATTGACCCTCGATTGTTGTTGATGGAAacacaattt-caaat---------
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold18213   217553 683 +   720316 I

a score=-9779.000000
s ce10.chrX              2489254 49 + 17718866 GACTTTGTTTGGCAATATTAGACT--AGTATTAGTATTT------------TTCTAGAAAAT-A
s cb4.chrX              17232763 39 - 21540570 -----aatctggaaa-attatgCATCAAACctactattt-----------------gaaaaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    75232 40 -  1794024 -----AACTTGTAA----TACGCA--atactttctatttt-----------tttcaaaaaaa--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     97731 53 +   484378 ----AAAGCTGACA----AACAAA--GTACTTTTAACTCTAGTTTCACGTGTTTCTTCTAATC-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3215557 55 -  4147112 I
e caeJap4.Scaffold18213   217553 683 +   720316 I

a score=-7522.000000
s ce10.chrX              2489303 31 + 17718866 TTTTTGGGCCAGGTATGCCACACAAGTACCC
s cb4.chrX              17232802  6 - 21540570 ----------------------aaaacc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    75272  4 -  1794024 ----------------------aaaa-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     97784 20 +   484378 TGCATGagc-----------taaaaataaat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3215612 18 -  4147112 TATTTGAG-------------GAAAATGTGT
i caePb3.Scfld02_0      I 55 C 0
e caeJap4.Scaffold18213   217553 683 +   720316 I

a score=444034.000000
s ce10.chrX              2489334 688 + 17718866  
s cb4.chrX              17232808 682 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    75276 652 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     97804 654 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3215630 675 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   218236 668 +   720316  
i caeJap4.Scaffold18213 I 683 C 0

a score=-14318.000000
s ce10.chrX              2490022 62 + 17718866 TGTTCCTGAAATTTCAAAATTTTAAAAATGGAAACTAATAAAAGTTTTAAGGGTTCTTggat-------
s caeRem4.Crem_Contig15    75928 24 -  1794024 ------------------ATTTGGTGAATTGA--------------------GTTATTGAAT-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     98458  4 +   484378 ----------------------------------------------------------GATG-------
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3216305  8 -  4147112 -----------------------------------------------------TTA-CGAGG-------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   218904 18 +   720316 ---------------------------------------------------TGTTTTTTAAGCATCttc
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17233490  0 - 21540570 C

a score=-708.000000
s ce10.chrX              2490084 24 + 17718866 tactcaagtagtgtcggaaaatta
s caeSp111.Scaffold582     98463  6 +   484378 ------------------AAATTT
i caeSp111.Scaffold582  I 1 I 2
s caePb3.Scfld02_0       3216315 17 -  4147112 -------GTGCCGTTGACAAATTC
i caePb3.Scfld02_0      I 2 I 11
s caeJap4.Scaffold18213   218922  7 +   720316 -----------------aaaatta
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17233490  0 - 21540570 C
e caeRem4.Crem_Contig15    75952  0 -  1794024 C

a score=-2945.000000
s ce10.chrX              2490108 43 + 17718866 aaaataacgtcaaaactgtattaaaatacataaaaacatgtat
s caeSp111.Scaffold582     98471  9 +   484378 ----------------------------------GACATgcat
i caeSp111.Scaffold582  I 2 I 10
s caeJap4.Scaffold18213   218929  1 +   720316 -----------------------------------------a-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3216332 11 -  4147112 I
e cb4.chrX              17233490  0 - 21540570 C
e caeRem4.Crem_Contig15    75952  0 -  1794024 C

a score=-1182.000000
s ce10.chrX              2490151 58 + 17718866 tttaCAATTGCCTCGCGCCCCTTGTTATAACACACAAGTTATACCACTTTTATTTCTC
s caeJap4.Scaffold18213   218930  8 +   720316 --------------------------------------------------tatttata
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3216332 11 -  4147112 I
e cb4.chrX              17233490  0 - 21540570 C
e caeSp111.Scaffold582     98480 10 +   484378 I
e caeRem4.Crem_Contig15    75952  0 -  1794024 C

a score=-2025.000000
s ce10.chrX              2490209 34 + 17718866 CACAACAAAACAAACGTTTTAAAGGTTTAAAAAG
s cb4.chrX              17233490  5 - 21540570 CACAA-----------------------------
i cb4.chrX              C 0 I 15
s caeJap4.Scaffold18213   218938  4 +   720316 cATA------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3216332 11 -  4147112 I
e caeSp111.Scaffold582     98480 10 +   484378 I
e caeRem4.Crem_Contig15    75952  0 -  1794024 C

a score=0.000000
s ce10.chrX              2490243 32 + 17718866 CTATCTGAAAATCTACTACtaaaaattaaaaa
e caePb3.Scfld02_0       3216332 11 -  4147112 I
e caeJap4.Scaffold18213   218942  0 +   720316 C
e cb4.chrX              17233495 15 - 21540570 I
e caeSp111.Scaffold582     98480 10 +   484378 I
e caeRem4.Crem_Contig15    75952  0 -  1794024 C

a score=156740.000000
s ce10.chrX              2490275 194 + 17718866 aaaattattCCAGACGAGACCCGACTTCGGTGGGTTATCCACTTCACGTCTGTCACAAACCCGCACGTTCTTCCCATTTTCACTTCGTTGCTGAACATCGTTTGCGCCTACGACCCCGTTGGCTACGGATTGCCCTACAATTATTTGCTATTCAACGATTCTAGAGAACCACTAGTCGAAATTGCTCTCCAGGT-
s cb4.chrX              17233510 184 - 21540570 ------atttcagatgagaATCGCCTGCGATGGATCTGTCACTTCACCGCTGTCACCAACCCACACGTACTTCCGATCTTCACATCCTTACTCAACATTGTTTGCGCTTATGATCCAGTTGGATATGGTCTCCCGTACAACTACTTGCTCTTCAATGACTCCAGAGAGCCTCTGGTAGAAATCGCTCTCC-----
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15    75952 190 -  1794024 AAAACTGTCCCAGATGAAAACCGCCTCCGATGGATCTGCCACTTCACCGCAGTCACCAACCCACATGTTCTACCAATTTTCACTTCACTTCTAAATATTGTATGTGCCTATGACCCAGTTGGATACGGACTCCCTTACAACTATCTGCTCTACAACGACTCAAGAGAGCCGCTGGTCGAGATTGCCCTTC-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     98490 187 +   484378 ------atttcagatgagaaTCGTCTCCGATGGATTTGTCATTTCACGGCCGTCACAAATCCACACGTGCTTCCAATTTTCACTTCTCTTCTCAACATCGTTTGTGCCTACGATCCTGTCGGTTATGGATTACCATACAATTATCTGCTATTCAACGACTCCCGAGAGCCACTTGTTGAAATTGCGCTTCAGG--
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3216343 187 -  4147112 ------ATTCCAGATGAAAATCGTCTCCGATGGATATCCCATTTCACGGCTGTCACAAACCAACACGTCCTCCCAATTTTCACATCTCTCCTGAACATCGTTTGCGCTTACGACCCTGTTGGATATGGATTACCCTACAATTATCTATTGTTCAACGATTCAAGGGAGCCTTTGGTTGAAATTGCTCTGCAGG--
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18213   218942 186 +   720316 --------TTCAGATGAAAATCGTCTTCGCTGGATTACACATTTCACAGCCGTCACGAATCCGCATGTTTTGCCAATTTTCACATCTCTCCTGAATGTTGTCTGTGCATATGACCCTGTTGGATATGGACTCCCTTACAACTACCTGCTCTTTAACGATTCTAGAGAGCCTCTAGTGGAAATTGCTCTTCAGG-T
i caeJap4.Scaffold18213 C 0 I 162

a score=275757.000000
s ce10.chrX              2490469 412 + 17718866  
s cb4.chrX              17233694 364 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    76142 412 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     98677 447 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3216530 454 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   219290 476 +   720316  
i caeJap4.Scaffold18213 I 162 I 31

a score=-9989.000000
s ce10.chrX              2490881 23 + 17718866 ACTG--AAATAACAAAATGTAGCAA
s cb4.chrX              17234058 15 - 21540570 tttt----------caaaccaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    76554 23 -  1794024 TAGT--ATTGACGACtaataaacat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99124 21 +   484378 A----GGAAGGAGAATAATTTGTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3216984 25 -  4147112 aaagcaaaaaatggataatacattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219766 31 +   720316 I

a score=145690.000000
s ce10.chrX              2490904 164 + 17718866 T---ATTTTCAGGAAGAGTTGGTCTCATCCATATGGGTGTTTTCATTATTTTGCTGCTCAGTGGAGAGCGAAATTTTGGAGTTCGTCTGAATAAGCCATACACAGCCAAAGCAAATATCAATGTGCAAACGTTTACTGGAACACACGCAGATTTATTAATTTTAGTG
s cb4.chrX              17234073 167 - 21540570 taaaaatttcagctcgaGTCGGATTAATCCACATGGGAGTGTTTATTATTCTACTTCTCAGTGGCGAACGTAATTTTGGTGTTCGACTCAACAAGCCGTATACAGCAAAAGCCAATATCAATATACAGACTTTTACTGGGACACATGcggatttattgattttggtA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    76577 164 -  1794024 t---tatttcagcGAGAGTCGGTCTTATTCACATGGGAGTTTTCATTATTCTGCTGCTCAGTGGGGAACGCAATTTTGGAGTCCGTCTCAACAAACCCTATACGGCGAAGGCTAATATCAATGTGCAGGCATTCACAGGGACTCATGCTGACTTGTTAATTTTGGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99145 164 +   484378 T---GCTTTCAGCCAGAGTCGGTCTTATTCACATGGGagttttcattattcttcttctcagtgGTGAACGGAACTTTGGAGTTCGGTTGAACAAGCCGTACACGGCAAAGGCCAACATCAATGTGCAGACATTCACGGGAACACACGCAGACCTTCTTATATTGGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3217009 164 -  4147112 t---gttttcagcgaGAGTGGGACTTATCCACATGGGagttttcatcattcttcttttgagCGGAGAACGTAATTTCGGAGTTCGCCTTAACAAGCCATACACAGCCAAGGCTAACATCAATGTGCAGGCATTCACAGGGACTCATGCAGATTTATTAATTTTAGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   219797 164 +   720316 ---cattttcagcTCGCGTTGGTCTTATCCACATGGGAGTCTTCATTATCCTTCTGCTCAGTGGAGAGCGCAACTTTGGAGTACGTCTCAATAAACCCTACACTGCGAAAGCCAACATCAATGTGCAAACGTTTACTGGAACTCATGCGGATCTGTTGATCCTGGTG
i caeJap4.Scaffold18213 I 31 C 0

a score=690.000000
s ce10.chrX              2491068 5 + 17718866 AGTGC
s cb4.chrX              17234240 5 - 21540570 AGGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    76741 5 -  1794024 AGCAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99309 5 +   484378 AGTAC
i caeSp111.Scaffold582  C 0 I 47
s caePb3.Scfld02_0       3217173 4 -  4147112 AGTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219961 0 +   720316 C

a score=-6682.000000
s ce10.chrX              2491073 49 + 17718866 TTGATGTAGATGAAATTTGAACTATGCATTTAAAGAACTAAAAGATATT----------
s cb4.chrX              17234245 42 - 21540570 ---gctaatttcaaatttgaaa----aatccgtaaatcttgaaaaaagt----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    76746 32 -  1794024 ---T----------ATGCAGAC----CGTCGAGTGAACTAAAATAGATT----------
i caeRem4.Crem_Contig15 C 0 I 266
s caePb3.Scfld02_0       3217177 33 -  4147112 --------------------------AAATGACTGAATTGGAAACGATGCTAGGATGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219961  0 +   720316 C
e caeSp111.Scaffold582     99314 47 +   484378 I

a score=-5923.000000
s ce10.chrX              2491122 102 + 17718866 --------CCAAAAAATATAATATCATCCAACTTTAACTACATGAGT---------------------------ATCATATTATATTTTGCttaaacatactaaaacatgcccaaaataaccga-attttat-aataag
s cb4.chrX              17234287  94 - 21540570 --------cTTGTAAAT-GTACCCATTCC----CGACCGGCACGAGC-----------------------------CAGTTGATAACtcacttcaaaa-ataaaaatgcgAGCAAAACTAC--ATACCTGATGAATGAG
i cb4.chrX              C 0 I 25
s caePb3.Scfld02_0       3217210 122 -  4147112 CTGTTGAgccaaaaaatgggatttcatCT----TCAGCAATATAAGTGAACGTTTTAGTAGTTTTAGCTGCTGTGGCAGTT-CTGGCACAGTCTGCTA-ACTAAAATAC-CGCAGGACTTC--A-AATTGAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219961   0 +   720316 C
e caeSp111.Scaffold582     99314  47 +   484378 I
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=-682.000000
s ce10.chrX              2491224 42 + 17718866 ac--ttctcaagaaatatccgaaaattttttatgactggtcaaa
s caePb3.Scfld02_0       3217332 28 -  4147112 TCAGTTTCCAAAACATA---GTTAATTT-------------AGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219961  0 +   720316 C
e cb4.chrX              17234381 25 - 21540570 I
e caeSp111.Scaffold582     99314 47 +   484378 I
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=-18626.000000
s ce10.chrX              2491266 328 + 17718866 aatagggttcaaaaaagagcaaaattttgctgaaatctgaa--------actctaccaactttttcttgtcacaacagcgtaaatacagtttttatttgatttatcgtttttaatgcatat------tctggtagtttatctcgcaaaaattttct----gattatgacatattttaagcagtggggcaggcatccaattttaagcatttttgcgtgcttatgggcttaaaatttgtctggtccaacgaatatacacgagatatactacctaaatatgcaataaagggtcacgaatatctaataaaactgtattctagcagctactgcggcaaaaaaa-acacgttg
s cb4.chrX              17234406 190 - 21540570 -----------------AATAAGAATCGACCAGCATTTAACCGGTGCGAACTA---AAATAGTGTCTGGCTGGACCATAGTG----------------------CCGGTTTCGAAGCTAGT--------TGATTCTTATA-----AAAAGTTGTAT----AGCTC--------ACGAAGCTCTG------TCATT---TGGTATGTTTTCTTGCTCA------GATTTCAA---------------------TCTTTGAAGC--------------------AAATTATC-------TGCCGGCCGGTCG------------------------ACAA-gtgtgt--
i cb4.chrX              I 25 C 0
s caePb3.Scfld02_0       3217360 261 -  4147112 AAT--GATTC-------AATAAAACTAGGTTA-CTTTTAAT--------ACTATGGCAAGAGTACATA---AGATGAAGGTG------------------TTTTTCGATTCTTACGCTTATAACCattgtgatatttttt-----taaaattctctTATGAGTTCTTA-----ATTGAGCTCCGAGCCAACCATC--ATGGTAAGTGCTTGCGTCCAT---TGAGTTCCAAAACTA--------aaagactttttttcaaac--------ttgataAACTGGAAATGAGCAAAACAATGTCATTAGATTG---------GGCTA-------AAAACAATGAACGTTG
i caePb3.Scfld02_0      C 0 I 49
e caeJap4.Scaffold18213   219961   0 +   720316 C
e caeSp111.Scaffold582     99314  47 +   484378 I
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=-368.000000
s ce10.chrX              2491594 119 + 17718866 gtgaaatttcagatttaagtaaaacttagctctttttttcaaaattttgacccgttataaaaaaatttctgaaatttttttgaggagtctcattatgaaaCCTTGAATATC---CCTTCTCT
s cb4.chrX              17234596  71 - 21540570 ttaaaa----aaatttgaatg--------------tttccaA-----------TTCATAAAATAATTTC------------------ACACATCATAAA----TGATTAtcgtattttctct
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3217621  49 -  4147112 I
e caeJap4.Scaffold18213   219961   0 +   720316 C
e caeSp111.Scaffold582     99314  47 +   484378 I
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=273.000000
s ce10.chrX              2491713 1 + 17718866 A
s cb4.chrX              17234667 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582     99361 1 +   484378 a
i caeSp111.Scaffold582  I 47 C 0
e caePb3.Scfld02_0       3217621 49 -  4147112 I
e caeJap4.Scaffold18213   219961 0 +   720316 C
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=1098.000000
s ce10.chrX              2491714 9 + 17718866 AATTGGTTT
s caeSp111.Scaffold582     99362 9 +   484378 aatgagttc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3217670 9 -  4147112 AACTagctt
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold18213   219961 0 +   720316 C
e cb4.chrX              17234668 0 - 21540570 C
e caeRem4.Crem_Contig15    76778 266 -  1794024 I

a score=4545.000000
s ce10.chrX              2491723 10 + 17718866 --TTTTCAGGTT
s cb4.chrX              17234668 10 - 21540570 --ttttcaggtC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77044 10 -  1794024 --ttttcaggtt
i caeRem4.Crem_Contig15 I 266 C 0
s caeSp111.Scaffold582     99371 10 +   484378 C--TTGTAGGTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3217679 12 -  4147112 cattttcaggtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   219961  0 +   720316 C

a score=373130.000000
s ce10.chrX              2491733 495 + 17718866  
s cb4.chrX              17234678 482 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77054 484 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99381 485 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3217691 491 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   219961 480 +   720316  
i caeJap4.Scaffold18213 C 0 I 808

a score=-2735.000000
s ce10.chrX              2492228 28 + 17718866 ATTTCATTATTCGGATTAACCCTTTAAA
s cb4.chrX              17235160 15 - 21540570 --ctaattttt-----------ttcaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77538 17 -  1794024 GACTAATTTCT-----------TCGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99866 25 +   484378 GAAAAACTGTTCCGATT---CCTTACAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3218182 17 -  4147112 gaaaaatcatt-----------ttaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   220441 808 +   720316 I

a score=42685.000000
s ce10.chrX              2492256 101 + 17718866 AAATGT-G-------------TTGCAGCTGCTAATCGTGACGAGATGGTAGATCAGCTGAAGTCCCCAACCTCTACCGCTCCACCGGAAATCCCAGCAGCTGATGCTCCCGCAGC------
s cb4.chrX              17235175 109 - 21540570 ccaaatcACGTATGGATCTCTTTCCAGCTGCCAATCGAGATGAAATGGTTGACCAACTAAAAAGCCCAACGACCGCCAATCCACCAGAGTTCCCAGCAGCCGG------TGCTTC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77555  96 -  1794024 ATCAATTA-------------TTCCAGCTGCCAATAGAGATGAAATGGTTGATCAGTTGAAGAGTCCAACTACAGCAACACCTCCAGAGTTCCCAGGAGCTGG------AGCCGG------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99891  96 +   484378 AAACATAG-------------TTTCAGCGGCTAACAGGGACGAAATGGTTGATCAGTTGAAAAGCCCAACCGCAGCCAATCCTCCAGAGCTACTGACTGGAAG------CGGAAC------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3218199  97 -  4147112 aAAAGTAG------------TTTTCAGCAGCCAATCGTGATGAGATGGTTGACCAACTAAAGAGCCCCACCACTGCAAATGCACCAGAATTTCCGGCAGCATC------AGGAAC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   221249 101 +   720316 --------------aacTACATTTTAGCTACCAACCGTGACGAAATGGTGGACCAACTCAAAAGCCCAACTGTCTCGAATCCCCCAGAATTTCCAGCAGCAGG------AGCTCCGGGAGC
i caeJap4.Scaffold18213 I 808 I 91

a score=-6115.000000
s ce10.chrX              2492357 21 + 17718866 ACAGACATTAGGAGGAGGTAG--------
s cb4.chrX              17235284 26 - 21540570 TTCGTCAA---CACCACCTGCAAGTAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77651 26 -  1794024 ACCAGGAACCGCATCACCTGC-AGCA--G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582     99987 21 +   484378 ACCACCAGTTGCAGCACGTAA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3218296 21 -  4147112 TCCGCCGGCCGGAGGACGTAA--------
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18213   221350 91 +   720316 I

a score=-2706.000000
s ce10.chrX              2492378 28 + 17718866 AGCATATTATTTCATGTTTGAATTATAA
s cb4.chrX              17235310 26 - 21540570 GACGTAAGtttttttCACTGG--AATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77677 17 -  1794024 GACGTACGTTGCT-----------ATAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100008 21 +   484378 -------GTTGTTATCaactatttttat
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3218317 36 -  4147112 I
e caeJap4.Scaffold18213   221350 91 +   720316 I

a score=257.000000
s ce10.chrX              2492406 10 + 17718866 ATGTCAACTA
s cb4.chrX              17235336 10 - 21540570 ATTTCAAATT
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig15    77694 10 -  1794024 CCATAAAAAT
i caeRem4.Crem_Contig15 C 0 I 14
s caeSp111.Scaffold582    100029 10 +   484378 atttcaaaag
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold18213   221441 10 +   720316 ATCTCATTTC
i caeJap4.Scaffold18213 I 91 C 0
e caePb3.Scfld02_0       3218317 36 -  4147112 I

a score=68611.000000
s ce10.chrX              2492416 125 + 17718866 ATTTTCAGTG---AGCACAACGACGGGACTTGCAGCAACGCCAGCTCTTGCTTCCATGACAGGAAATGTTGGAAACTGGGAAGAACGGCCGGAGTCTTCGCAAGATAGTAAGTGGCAA------ATGTTTAGAA
s cb4.chrX              17235354 113 - 21540570 ---TTTAGCA---AGTACAACAGCTGGACTGGCCGCCACACCTGCACTAGCAAGTATGACTGGAAACGTTGGAAATTGGGAAGAAAAGCCCGAGTCT---CAAGAAGGTGAG------------TAGTTAAGGA
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15    77718 108 -  1794024 gttttcagcg---AGCACTACGGCAGGACTTGCTGCTACTCCTGCACTTGCAACAATGACTGGAAACGTAGGAAGTTGGGAAGAAAAACCGACCGCT---CCGGAAGG--------------------TAAGGC
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582    100043 113 +   484378 AATTTCAGCA---AGTACAACTACTGGTCTTGCTGCAACTCCTGCCTTGGCATCCATGACAGGAAATGTGGGAAGCTGGGAGGAAAAACCAACTGCT---CAAGACAGT---------------AAGtgatgaa
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3218353 128 -  4147112 ACTTTCAGCG---AGCACAACAACTGGTCTTGCTGCTACACCAGCACTTGCATCGATGACTGGAAATGTTGGTAGCTGGGAGGAAAAACCAACTGCT---CAAGATAGTTCGTAGATAAGCACAGAGTTAAGAA
i caePb3.Scfld02_0      I 36 I 14
s caeJap4.Scaffold18213   221451 120 +   720316 ATTTATAGCGAACAACACAACAACCGGGCTTGCCGCCACGCCTGCACTTGCATCCATGACTGGAAATGTGGGCAATTGGGAAGAGAAGCCTGTGCCA---CAAGATAGtgaga-----------aaatttagaa
i caeJap4.Scaffold18213 C 0 C 0

a score=477.000000
s ce10.chrX              2492541 2 + 17718866 AA
s cb4.chrX              17235467 2 - 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77826 2 -  1794024 AC
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   221571 2 +   720316 aa
i caeJap4.Scaffold18213 C 0 I 18
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeSp111.Scaffold582    100156 0 +   484378 C

a score=-7539.000000
s ce10.chrX              2492543 73 + 17718866 TATATTTGAAATCATTTAAGTGATGCTAAAATGTCCAAATATCATTGTAGTGTTATAAAAATGGTAAAATTTT
s cb4.chrX              17235469 36 - 21540570 CAAGTACGAAA----------------AAACTGTACCGAT----------TGTTTTAACAGT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77828 23 -  1794024 AACGTTCAATA----------------AA---------------------TGTAATAAAA-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100156 16 +   484378 ---atttgaat----------------aa---------------------aatatt-----------------
i caeSp111.Scaffold582  C 0 I 7
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeJap4.Scaffold18213   221573 18 +   720316 I

a score=-920.000000
s ce10.chrX              2492616 39 + 17718866 ACCCAAAAAAACTTTGATACTAATTTTTTAGGCAACTTC
s cb4.chrX              17235505  3 - 21540570 ------------------------------------TCC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeJap4.Scaffold18213   221573 18 +   720316 I
e caeSp111.Scaffold582    100172  7 +   484378 I
e caeRem4.Crem_Contig15    77851  0 -  1794024 C

a score=413.000000
s ce10.chrX              2492655 11 + 17718866 TAGAGTTGAAT
s caeRem4.Crem_Contig15    77851  7 -  1794024 ----GTTGAGT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeJap4.Scaffold18213   221573 18 +   720316 I
e cb4.chrX              17235508  0 - 21540570 C
e caeSp111.Scaffold582    100172  7 +   484378 I

a score=0.000000
s ce10.chrX              2492666 135 + 17718866 CTGAACCACATTTCGCAAAAATTTGGCGACTTACCAAAACTTTAACTCATAAGTTTTGAAAATCTGAAAATGTTTTCTTATGTTGGCCGAATGTATTTAAACTGAATCCCAACTCACAATACTGCTTGAAAAATT
e caePb3.Scfld02_0       3218481  14 -  4147112 I
e caeJap4.Scaffold18213   221573  18 +   720316 I
e cb4.chrX              17235508   0 - 21540570 C
e caeSp111.Scaffold582    100172   7 +   484378 I
e caeRem4.Crem_Contig15    77858   0 -  1794024 C

a score=-41.000000
s ce10.chrX              2492801 14 + 17718866 TTAAATTCCAATAA
s caeRem4.Crem_Contig15    77858 10 -  1794024 TTCAGTTCCG----
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeJap4.Scaffold18213   221573 18 +   720316 I
e cb4.chrX              17235508  0 - 21540570 C
e caeSp111.Scaffold582    100172  7 +   484378 I

a score=0.000000
s ce10.chrX              2492815 7 + 17718866 AAAAAAA
e caePb3.Scfld02_0       3218481 14 -  4147112 I
e caeJap4.Scaffold18213   221573 18 +   720316 I
e cb4.chrX              17235508 0 - 21540570 C
e caeSp111.Scaffold582    100172 7 +   484378 I
e caeRem4.Crem_Contig15    77868 0 -  1794024 C

a score=1344.000000
s ce10.chrX              2492822 6 + 17718866 TTTTGT
s caeSp111.Scaffold582    100179 6 +   484378 tatttc
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3218495 6 -  4147112 TTTTGC
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18213   221591 6 +   720316 TTTTTT
i caeJap4.Scaffold18213 I 18 C 0
e cb4.chrX              17235508 0 - 21540570 C
e caeRem4.Crem_Contig15    77868 0 -  1794024 C

a score=117352.000000
s ce10.chrX              2492828 121 + 17718866 AGACGAGTGGATAGCAACACAAGAATGGGCCGATGCATGGAAGTCGAAACTTCCTCTGCAGACTATCATGAGATTGCTCCAAGTGTTGGTGCCGCAAGTTGAAAAAATTTGCATCGATAAG
s cb4.chrX              17235508 121 - 21540570 AGAAGAATGGATTGCAACTCAAGAATGGGCAGAGGCGTGGAAGTCGAAATTGCCACTTCAGACGATCATGAGACTTCTTCAAGTTTTGGTTCCACAGGTCGAGAAGATATGCATTGATAag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    77868 120 -  1794024 -GAGGAGTGGATTGCAACTCAAGAATGGGCTGAGGCATGGAAGTCAAAATTGCCATTGCAAACTATTATGCGGCTGCTTCAAGTTTTGGTTCCGCAGGTGGAGAAGATCTGCATTGACAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100185 121 +   484378 agatgaatggATTGCAACTCAAGAATGGGCAGAAGCGTGGAAGGCAAAATTGCCATTGCAGACAATCATGAGACTATTGCAAGTATTGGTTCCACAAGTTGAAAAGATTTGCATTGATAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3218501 121 -  4147112 AGATGAATGGGTTGCCACACAAGAATGGGCTGAGGCTTGGAAGTCGAAACTTCCACTGCAAACCATCATGAGGCTTTTGCAAGTGTTGGTGCcacaagttgagaaaatctGTATTGACAAG
i caePb3.Scfld02_0      C 0 I 294
s caeJap4.Scaffold18213   221597 121 +   720316 AGATGAGTGGATTGCCACCCAAGAGTGGGCTGAAACGTGGAAGACAAAACTGCCCTTGCAAACAATCATGCGACTTTTGCAAGTCCTTGTGCCGCAAGTTGAGAAGATCTGCATTGACAAG
i caeJap4.Scaffold18213 C 0 C 0

a score=4550.000000
s ce10.chrX              2492949 6 + 17718866 TGAGTT
s cb4.chrX              17235629 6 - 21540570 tgagtt
i cb4.chrX              C 0 I 747
s caeRem4.Crem_Contig15    77988 6 -  1794024 TAAGTT
i caeRem4.Crem_Contig15 C 0 I 13
s caeSp111.Scaffold582    100306 6 +   484378 TAAGTT
i caeSp111.Scaffold582  C 0 I 13
s caePb3.Scfld02_0       3218916 6 -  4147112 tgagtt
i caePb3.Scfld02_0      I 294 I 62
s caeJap4.Scaffold18213   221718 1 +   720316 -----T
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2492955 13 + 17718866 ATTAATTTTGAAA
e caePb3.Scfld02_0       3218922 62 -  4147112 I
e caeJap4.Scaffold18213   221719  0 +   720316 C
e cb4.chrX              17235635 747 - 21540570 I
e caeSp111.Scaffold582    100312 13 +   484378 I
e caeRem4.Crem_Contig15    77994 13 -  1794024 I

a score=-7400.000000
s ce10.chrX              2492968 44 + 17718866 CAATTT-AACTACATAGCATTTCAATGTAAATGTAAAAAACAATG
s caeRem4.Crem_Contig15    78007 12 -  1794024 TAttgtgaaatg---------------------------------
i caeRem4.Crem_Contig15 I 13 C 0
s caeSp111.Scaffold582    100325 39 +   484378 CACTTTGAGCTGGAAAAggattccatttg-----aaaaaaggtt-
i caeSp111.Scaffold582  I 13 C 0
s caeJap4.Scaffold18213   221719  3 +   720316 ---------ATG---------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3218922 62 -  4147112 I
e cb4.chrX              17235635 747 - 21540570 I

a score=-522.000000
s ce10.chrX              2493012 8 + 17718866 TAAAAATG
s caeRem4.Crem_Contig15    78019 8 -  1794024 gaaaaatg
i caeRem4.Crem_Contig15 C 0 I 65
s caePb3.Scfld02_0       3218984 8 -  4147112 TACAGTTG
i caePb3.Scfld02_0      I 62 C 0
s caeJap4.Scaffold18213   221722 3 +   720316 TAA-----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17235635 747 - 21540570 I
e caeSp111.Scaffold582    100364 0 +   484378 C

a score=-11369.000000
s ce10.chrX              2493020 72 + 17718866 ATAAATAAAACGACAACG----GTTAGTCAAAGTTGAGA-----ATACTATCTG------AGGATATACGCTAGATACTTCatatat
s caeSp111.Scaffold582    100364 54 +   484378 ----------------------tttcgTCAGTGCTCCGG-----GTGCTCTCTTGGAGTCAGGTCATAAATTAGACA------GAGT
i caeSp111.Scaffold582  C 0 I 32
s caePb3.Scfld02_0       3218992 85 -  4147112 AGAAACGGAATGCCGAATCCAAATTAGTTACCGTCCAGGTTCctatattttctcaaattcaagaACT--GCTAGACGTTTCGTTGAT
i caePb3.Scfld02_0      C 0 I 45
s caeJap4.Scaffold18213   221725 17 +   720316 ---------------------------------------------------------TTTGAGCC----GCTTGAAAC---------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17235635 747 - 21540570 I
e caeRem4.Crem_Contig15    78027 65 -  1794024 I

a score=-2926.000000
s ce10.chrX              2493092 24 + 17718866 ataattattaaatttattttCCTA
s caeRem4.Crem_Contig15    78092 21 -  1794024 ---ataaactttaaagtctttttt
i caeRem4.Crem_Contig15 I 65 C 0
s caeSp111.Scaffold582    100450 24 +   484378 aaaatgtttttgtttacCATTGTT
i caeSp111.Scaffold582  I 32 I 2
s caePb3.Scfld02_0       3219122 24 -  4147112 CCAATGAGCCAGTCGATTATTTCT
i caePb3.Scfld02_0      I 45 I 5
s caeJap4.Scaffold18213   221742  9 +   720316 ---------------GTTTTCTCA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17235635 747 - 21540570 I

a score=157478.000000
s ce10.chrX              2493116 183 + 17718866 AAATGAAA----------------------------------------TTCAATATTTACAGAGGCCTCACCGATGAGAGCGAGATTCTGAAATTCCTTCAACATGGAACTCTTGTGGGACTTCTTCCAGTACCACACCCAATTGTAATCAGAAGATATCAAACGAATATTGGCACAAATCACTGGTTCCGCATCTACATGTGGGGAGTCATTTATCTCAAGT
s cb4.chrX              17236382 186 - 21540570 AAattcag-------------------------------------ttcattttttctttcagaggTCTCACCGACGAAagcgaaattctcaaattcctcCAACACGGAACTCTCGTCGGACTTCTTCCGGTTCCACACCCAATCGTTATCCGCCGCTACCAAACCAACGTTGGCACTAACCACTGGTTCCGTATCTACATGTGGGGTGTGATTTATCTTAGGT
i cb4.chrX              I 747 C 0
s caeRem4.Crem_Contig15    78113 179 -  1794024 gaatgaa--------------------------------------------tcttttttcagaggTCTCACCGATGAAAgcgagattctgaaattcttgcAACATGGAACCCTCGTTGGACTTCTCCCAGTGCCACACCCAATTGTGATCCGTAGATATCAAACCAACGTTGGCACCAACCATTGGTTCCGCATTTACATGTGGGGTGTGATTTATCTCAGGT
i caeRem4.Crem_Contig15 C 0 I 39
s caeSp111.Scaffold582    100476 177 +   484378 ACAAGAAA----------------------------------------------TTTTGCAGAGGACTCACCGATGAAAgcgagattttgaaattcttgcAACATGGAACCCTAGTAGGGCTACTCCCGGTACCTCATCCCATTGTGATCAGGAGATATCAAACAAATGTTGGCACTAATCATTGGTTCCGTATCTATATGTGGGGTGTAATTTACTTGAGgt
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3219151 223 -  4147112 ACATGAAATCTTAGGCTGCTCGCGATCTTGAAGTTGCACGATTACaatagtatttttttcagaggacTCACTGACGAAagcgaaattctgaaattcttgcAACATGGAACTCTTGTTGGACTACTTCCGGTTCCACACCCAATTGTCATCCGGAGATATCAAACGAATGTTGGCACGAACCACTGGTTCCGAATCTATATGTGGGGTGTAATCTACCTAAGGT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   221751 175 +   720316 ---CGAAA---------------------------------------------GATTTTTAGGGGATTGACTGATGAAAGCGAGATCTTGAAGTTTTTGCAACATGGAACCCTTGTGGGACTTCTCCCAGTCCCACACCCAATTGTAATTCGAAGATACCAAACGAATGTGGGTACGAATCATTGGTTCCGAATCTATATGTGGGGAGTCATTTATCTCAGGT
i caeJap4.Scaffold18213 C 0 I 37

a score=732.000000
s ce10.chrX              2493299 3 + 17718866 AAG
s cb4.chrX              17236568 3 - 21540570 GAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    100653 3 +   484378 tag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3219374 3 -  4147112 TAG
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18213   221926 37 +   720316 I
e caeRem4.Crem_Contig15    78292 39 -  1794024 I

a score=-283.000000
s ce10.chrX              2493302 3 + 17718866 ATT-
s cb4.chrX              17236571 3 - 21540570 -TTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    100656 3 +   484378 -ttt
i caeSp111.Scaffold582  C 0 I 22
e caePb3.Scfld02_0       3219377 10 -  4147112 I
e caeJap4.Scaffold18213   221926 37 +   720316 I
e caeRem4.Crem_Contig15    78292 39 -  1794024 I

a score=282.000000
s ce10.chrX              2493305 3 + 17718866 TTG
s cb4.chrX              17236574 3 - 21540570 TTG
i cb4.chrX              C 0 I 10
e caePb3.Scfld02_0       3219377 10 -  4147112 I
e caeJap4.Scaffold18213   221926 37 +   720316 I
e caeSp111.Scaffold582    100659 22 +   484378 I
e caeRem4.Crem_Contig15    78292 39 -  1794024 I

a score=0.000000
s ce10.chrX              2493308 621 + 17718866  
e caePb3.Scfld02_0       3219377  10 -  4147112 I
e caeJap4.Scaffold18213   221926  37 +   720316 I
e cb4.chrX              17236577  10 - 21540570 I
e caeSp111.Scaffold582    100659  22 +   484378 I
e caeRem4.Crem_Contig15    78292  39 -  1794024 I

a score=626.000000
s ce10.chrX              2493929 19 + 17718866 CAATACTCTTCTTTTAAGA
s caePb3.Scfld02_0       3219387 19 -  4147112 caaaacatgtttttcaaaa
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18213   221926 37 +   720316 I
e cb4.chrX              17236577 10 - 21540570 I
e caeSp111.Scaffold582    100659 22 +   484378 I
e caeRem4.Crem_Contig15    78292 39 -  1794024 I

a score=-547.000000
s ce10.chrX              2493948 2 + 17718866 -AG
s cb4.chrX              17236587 2 - 21540570 -AG
i cb4.chrX              I 10 C 0
s caePb3.Scfld02_0       3219406 2 -  4147112 ca-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   221926 37 +   720316 I
e caeSp111.Scaffold582    100659 22 +   484378 I
e caeRem4.Crem_Contig15    78292 39 -  1794024 I

a score=220.000000
s ce10.chrX              2493950 2 + 17718866 AT
s cb4.chrX              17236589 2 - 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78331 2 -  1794024 AC
i caeRem4.Crem_Contig15 I 39 C 0
s caePb3.Scfld02_0       3219408 2 -  4147112 ac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   221926 37 +   720316 I
e caeSp111.Scaffold582    100659 22 +   484378 I

a score=6058.000000
s ce10.chrX              2493952 20 + 17718866 ATTTCGCAACATCACATGTC
s cb4.chrX              17236591 16 - 21540570 ATTTCGCAACACCT----TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78333 16 -  1794024 ATTTCGCAATATTT----CT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100681 15 +   484378 ATTTCGCAACATCt-----c
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0       3219410 16 -  4147112 atttcgcaacatgt----ga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   221926 37 +   720316 I

a score=120652.000000
s ce10.chrX              2493972 142 + 17718866 CACTT--TTTCAGACACACACAACCCCCAATTTGGTACGACACCGATGTGAAACTTTTCGAGGTTCAACGAGCGTGAACAA-TCT-----AGAACATGTGTCAC-TTTATG--------AATATCGCT-----TGTGCATTATC---CTG----CATTTCGCATATCTTCT
s cb4.chrX              17236607 159 - 21540570 ---TCT-TTTCAGAAACACACAACCACCGATTTGGTATGACACCGATGTGAAACTCTTCGAGATTCAACGAGCGTGAACAA-TTCAGCAAAGAACATATGTCACATTTCTGCCGCCCCAAATATCGCATG---TGTGCAATATC---CAGAGCAAA-TTCGcatatctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78349 143 -  1794024 GAATCTATTACAGAAACACCCAACCACCAATTTGGTATGACACAGATGTGAAACTTTTCGAGATTCAACGAGCGTGAACAA-TCT-----AGAACATATGTCAT-TTTGTG--------AATATCGCA-----TGTGCAATATC---CTG----CA-TTCGCATATCTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100696 141 +   484378 gagtt--tttcagaaacaccCAACCGCCGATTTGGTACGACACCGATGTGAAACTTTTCGAGATTCAACGAGCGTGAACAA-TCT-----AGAACATATgtcat-tttcca--------aatatcGCA-----TGTGCAATATC---CTG----CA-TTCGCATATCTTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3219426 141 -  4147112 aaatt--ttccagaaacacgCAGCCACCAATTTGGTACGACACGGACGTGAAACTCTTTGAGATTCAACGAGCGTGAACAATTCT-----AGAACATATGTCA--CTTCTG--------AATATCGCA-----TGTGCAATATC---CTG----CA-TTCGCATATCTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   221963 143 +   720316 CATCT--ATTCAGAAATACTTCGCCACCAATTTGGTACGACACAGATGTGAAACTCTTTGAGATTCAACGAGCATGAAC-----------AGAACACATGTTT--CTTTTG--------AATATCGCATGCCATGTGCAATATCTAACTA----CT-CTTTCATATCTTTT
i caeJap4.Scaffold18213 I 37 I 348

a score=64905.000000
s ce10.chrX              2494114 268 + 17718866 TT--------ATGT--TGTGCATGTGAAG----------------------TTTTTCTTGTTTTCTTCCTCTCATTCTCATC---CCCATTTTTTTTTCAATACCACATCAAACAAGCGTTCGAGCTTCGTATATCTGTGTTCACGTAAATTGATTCTCTCTTTTTTCATTCAGCATTT--------------TCTGTTTTAAAATTTT---TG-------------------AAATTTTAGATCTCT-GAA----TGTTTCTTGTGAAAAAAAT-GAAGTA--AAAACCTTATTTATATTCAT------------ATTCAAA-------AGGCATAATATCA------------CTGGTCTTTTGACAAAGGACGTA
s cb4.chrX              17236766 318 - 21540570 t----tttgaatgttgtgTGCATGCGAAAAAACGTAATCTATTCACTCTCTTCCCGCTTCCATATTTTTT--CACTCTCATCCTTTCTAGTTTTTTCCTCT-ATTCTCTTGTCTAAGCGTTCCAGCTTCGTACATCTGTGTTCATGTAAATTGATTCtccg-ttcttcttctcccattTTCCTCACATCTTGGTTTTTCCTGGCGTATT---TCTCTCACAATGACATATACAAAATGCTGTATCTCT-CTATGA-TGTTTCTTGTAGAAATAATGATAGTAATAAAATTCTATTTAAGTTGAT------------TGttaaa-------agaggaagaaaat----------------------------ctgtgta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78492 304 -  1794024 TTTACTTCAAATGT--TGTGCATGCGAAG--------------------TTTccctctttctcctttttt-----tctcatc---tctaGTTTCTTCCCCC-A-CCCATCAAACAAGCGTTCCAGCTTCGTACATCTGTGTTCATGTAAAttgattc------tcttcttctcccaattct------------tctcttttgacGTATG---TATTTCTCACCGACATATACAAAATGTTGTATCTCC-AAATTATTGTTTCTCATAGACA-----ACAGTaataaatttctatttttatccat------------tttcgagttcaaccaaaaaaagaaacctaTATAGTTTATCTT---GTGTAACATACTTTGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    100837 290 +   484378 TTTACTTCGAATGT--TGTGCATGCgaag----------------------tttttcttccatctttct------------c---tctttttgtgtcCCCA---CCCATCAAACAAGCGTTCCAGCTTCGTACATCTGTGTTCATGTAAAttgattctctc-ttctctct----catttct------------tctcttctagagttttttcttcttctcactgaCATTTAC-AATTTCTGCATCTCT-GAA----TGTTTCTTGTAGATA-----TAAGTAATAAAATTCTATTTATATTCATGGGAAGTTggcctggaaaa-------aaagacaaagtcG-----------TCTTTCAGTGTAACAGAAGTCGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3219567 281 -  4147112 TTTACTTCAAATGT--TGTGCATGCGAAG----------------------TTATTCTTTCTCCTATCTC-----------C---TCTAGTTTTTCTCCCT---CCCATCAAACAAGCGTTCCAGCTTCGTACATCTGTGTTCATGTAAAttgattctctc-tttttcttccaacaattct------------tctcttttggCGtttt------ttttCACCGACATTTAC-AAATGATGTATCTCTAAAA----AGTTTCTTGTAGAAA-----TAAGTAATAAAATTCTATTTATATTCATGAA-----Ggcatcttcaa-------aaaagtaggATCT-----------CCT----GTGTAACATACGTCGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   222106 348 +   720316 I

a score=26432.000000
s ce10.chrX              2494382 53 + 17718866 A----------------------GAAAAAAGTACGCTGTCCTAATGTTCCCGG---------CCGAAAACTCAA-TTTGCGTT----------------TC
s cb4.chrX              17237084 72 - 21540570 agaa-------------------aaaaaaagtacgaTGTCCTATTGTTCCCaa---------gtgaaaattcaattttgc-tttttttttctcgcaaAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78796 71 -  1794024 GGAAGGAAGAG---AAATCCAGCaaaaaaaGTACGTTGCCCTATTGTTCACaa---------gtgaaaatttga-tttgc-tt----------------gc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    101127 63 +   484378 Aggaggaagat------------gaaaaaagtacGTCGCCCTATTGTTCCCAt---------gtgaaaattcaa-tttgcttt----------------tt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3219848 66 -  4147112 A-AAGGAAAATGTTAG-------GAAAAAAGTGCGTTGTCCTATTGTTCACAc---------gtgaaaattgga-tttgc-tT----------------CC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   222454 61 +   720316 ----------------------AGAAAAAAGTGCGTCGTCCTATTGTTCCCAcggaaaaagtgtgaaaattcaa-tttag-tT----------------TC
i caeJap4.Scaffold18213 I 348 I 1590

a score=14171.000000
s ce10.chrX              2494435 45 + 17718866 ACAAA-------------AAAAAAGTGAACCACT---GCCGGAAAATGATGTATTGAAGCT
s cb4.chrX              17237156 59 - 21540570 TTACAACACATTTACAACAAAAAGCTGAACCTCGGTCGAAAGAAAATGACGCATTGAAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    78867 45 -  1794024 ttaca-------------aaaaagttgaacaacG---CGAGGGAAATGACGCATTGAAACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    101190 45 +   484378 ttaca-------------aaaaagttaaacCACA---GCCGGGATATGACGCATGGAGACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3219914 44 -  4147112 TTAC--------------AGAAAGTTAAACCACT---GCCGGGATatgacgtttcgaaact
i caePb3.Scfld02_0      C 0 I 380
e caeJap4.Scaffold18213   222515 1590 +   720316 I

a score=273.000000
s ce10.chrX              2494480 1 + 17718866 A
s caeRem4.Crem_Contig15    78912 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    101235 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 255
e caePb3.Scfld02_0       3219958 380 -  4147112 I
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e cb4.chrX              17237215 0 - 21540570 C

a score=59.000000
s ce10.chrX              2494481 63 + 17718866 CCGGCTAACTGAATTCTCTATTCTAACAAAATTTTGAATATGCTGCTTTTTGT----GGAAAATCAG
s cb4.chrX              17237215 63 - 21540570 -CTTTTAGTTGAATTTCGTGCTCAGTTCCG---TTgagaaaattcggtttttttgtCGCAAAATCAG
i cb4.chrX              C 0 I 1734
s caeRem4.Crem_Contig15    78913 59 -  1794024 GCTGTGAGTCTAAATTCAGTTTTAGTCGCGGTTTTGAATAGTATCGtct--------gaaaagtcag
i caeRem4.Crem_Contig15 C 0 I 239
e caePb3.Scfld02_0       3219958 380 -  4147112 I
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e caeSp111.Scaffold582    101236 255 +   484378 I

a score=0.000000
s ce10.chrX              2494544 1093 + 17718866  
e caePb3.Scfld02_0       3219958  380 -  4147112 I
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e cb4.chrX              17237278 1734 - 21540570 I
e caeSp111.Scaffold582    101236  255 +   484378 I
e caeRem4.Crem_Contig15    78972  239 -  1794024 I

a score=333.000000
s ce10.chrX              2495637 5 + 17718866 TCTTT
s cb4.chrX              17239012 5 - 21540570 ttttt
i cb4.chrX              I 1734 C 0
e caePb3.Scfld02_0       3219958 380 -  4147112 I
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e caeSp111.Scaffold582    101236 255 +   484378 I
e caeRem4.Crem_Contig15    78972 239 -  1794024 I

a score=-1606.000000
s ce10.chrX              2495642 4 + 17718866 -TCT-G
s cb4.chrX              17239017 4 - 21540570 acCA--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3220338 4 -  4147112 -tctt-
i caePb3.Scfld02_0      I 380 C 0
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e caeSp111.Scaffold582    101236 255 +   484378 I
e caeRem4.Crem_Contig15    78972 239 -  1794024 I

a score=436.000000
s ce10.chrX              2495646 57 + 17718866 TTTC--AAAGTTTCTCAGAGCAATCATATTTCACTGGCTCCCAGGATACAATTTTTTCT------
s cb4.chrX              17239021 52 - 21540570 TCTC--AAAGTTCACCCAACCTATCAATTTTCAC-----------ATATCACATTTCTTttatct
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    101491 41 +   484378 tttcaaaaaatctg------ctATCACAtttcac--------------ttgttttcttctt----
i caeSp111.Scaffold582  I 255 C 0
s caePb3.Scfld02_0       3220342 38 -  4147112 tttc--aaagtttg------ctATCAAGTTTTAC-----------AGATAGCTTTGT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   222515 1590 +   720316 I
e caeRem4.Crem_Contig15    78972 239 -  1794024 I

a score=-2952.000000
s ce10.chrX              2495703 138 + 17718866 -------------TTCA----AGTTTTTA-ACTGTTTTGCTTTTTTTTTTTAATTAAACTTTAAAGTCTCTCAATCT--TTCATTCCAATGCCAATGGGAT--AAGGTCACT------TGCGGAAGA------AGTGGTAT--A------------CGCCCTGATC--ACTCAGATCT-------------TTTCCTTCGC
s cb4.chrX              17239073 153 - 21540570 -------------ttcatttttctgttaaCAGTTTTCATCGTTAACagttccaattttc--tcaaacaTCTCAATTTCCCATTCTTCAATGCCGTACTGTCCAAGGGTCACC--------ATTAAGA------CACCGATC--GTCATCTCCCTC-CATCACCCGC----TTAGATCG-------CTCGTCCTTCT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    79211 156 -  1794024 -------------TTCA-------------AGTTCTCTTGTTTTAGCATTCTTTTGTTCGTTGAAACGTATCAATTT--TGATTTCCAATTCCAATCTGTC--AGGGTCACC---AATCAAGTAAAA------AACGGTCT--CTTGTTTTCATCTCATCGCTTTC----TTAGATcgtctctttctcatttctctcgcAC
i caeRem4.Crem_Contig15 I 239 C 0
s caeSp111.Scaffold582    101532 191 +   484378 ctcactgGGAATTCTCA----TCAATTAG-AATAACTTTTTCGCATTGTTTCGTTTCTCAGTGAAACAATTCTATTC--TGATTCCCAATGCCAATCTGGT--AAGGTCACCAAGAACCGATCAAAAGGGACTAACGtcttaatttgattctttctctctctcttcttggttatattgcctttttcttat-tctctctcAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3220380 164 -  4147112 -----------TTCTCA----ACTGTCGA-AATtacttttgttcatt------tttctcattgaaacaTCTTGATTT--CGATTTCCAATGCCAATCTGCT--AAGGTCACC----ACCGATCAAAGCGGTCTAACGGT----CTTGATTCTTTCCTTTCCCAGTC--GGTAAGATTGTCTGTTTCTCAT-TCTCTCGCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   222515 1590 +   720316 I

a score=325591.000000
s ce10.chrX              2495841 643 + 17718866  
s cb4.chrX              17239226 722 - 21540570  
i cb4.chrX              C 0 I 350
s caeRem4.Crem_Contig15    79367 598 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    101723 574 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3220544 554 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   224105 620 +   720316  
i caeJap4.Scaffold18213 I 1590 C 0

a score=-961.000000
s ce10.chrX              2496484 54 + 17718866 CTATACATA---------TACGTTAGT---CACTCTTCCTCCTGCA-------------TCCGAATTTTACGATTTCAC
s caeRem4.Crem_Contig15    79972 50 -  1794024 TATTCCTTA---------CAGTTTGAG----ATCA--------------CCTTACTC--TCCGAAATTTACGATTTCAC
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    102297 64 +   484378 TGTTTCCTA---------CATTTTAGG----ATTAGTCACTCAACACTCTCCTACTT--TCCGAAATTCACGATTTCAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221098 77 -  4147112 CCATGCTTATAAGAGTACCATGTCAGTAGCCACTAGTCTTTCCGTACTTCCGAACAT--TCCGAATTTTACGATTTCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   224725 60 +   720316 ----------------ttcatttcctt---taCTTCCCCCTCTCTACCGTATTAGTTAGGTGGCAACTTTCAATTTCTc
i caeJap4.Scaffold18213 C 0 I 34
e cb4.chrX              17239948 350 - 21540570 I

a score=11003.000000
s ce10.chrX              2496538 60 + 17718866 GCCTCATACACTGTTTTGTATGTATTTGTATGTATGTACAAAG-TAATTGTAGTGA---AGAT-A
s caeRem4.Crem_Contig15    80022 64 -  1794024 GCCTCATAGTTTGTTTTGTACGTACATTCATTCATACAAAATGATGATTGTGGTAGAATAGTT-G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102361 59 +   484378 GCCTCATCGTTTGTTT----TGTACATGAATACATACAAATTGATGATTGTAGTAG--TAGGATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221175 62 -  4147112 GCCTCATAGTTCATTTTCTATCTACATTCATTCATACAAAGTGATTAttgtagtag--tagta-g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   224785 34 +   720316 I
e cb4.chrX              17239948 350 - 21540570 I

a score=48550.000000
s ce10.chrX              2496598 88 + 17718866 TAT----------GTGGATCCTTTAACACACGCCTAACTGATTTAGCACGTCAACAATGCGGGTAATTCTTAGACGCGGTGGAGTAGAAATATGAACA
s caeRem4.Crem_Contig15    80086 98 -  1794024 TATCGGTTGTTCGGGGGGTCCTTTACAACACGCATAACTGATTTAGCACGTAAACAATGCGGGTAATTTATGAACGCGGCGGAGTAGAAATATGAACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102420 96 +   484378 TATCGGTTGTA--GGAGGTCCTTTACCACACGCATAACTGATTTAGCACGTAAACAATACGAGTAATTTATGGGCGCGTTGGAGTAGAAATATGAACA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221237 95 -  4147112 tatcGGTCGTT--GG-GGTCCTTTACCACACGCATAACTGATTTAGCACGTAAACAATGCGGGTAATTTATGGACGCGGTGGAGTAGAAGTATGAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   224819 86 +   720316 --------TTT--GTCCATGTTCTAC--CACGCATAACTGATTTAGCGCGTTAACAACACCGGTAATTTATGGATGTATGTATGTAGGTATCTAGATA
i caeJap4.Scaffold18213 I 34 I 186
e cb4.chrX              17239948 350 - 21540570 I

a score=2181.000000
s ce10.chrX              2496686 85 + 17718866 AATTATGCTGCAGACCTTCTCCCTAGGGACCAAACTTGT--------GAATAGCATTTT----ACTTTTTCTCATATACTAAGTGAGTTCTCATGTT
s caeRem4.Crem_Contig15    80184 77 -  1794024 AATTATGTTGGAG----------AAGGGAACCAAGTTGTCCCTAGGGGAATAAGCCTGA-ATGACCATTTCTCCTATTCTGAGT-AGTT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102516 53 +   484378 AATTATGCTAGA-----------AAAGGAACCAACTTGTCCCCCTGGGAATGTGTTTTCAAGGA---------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221332 52 -  4147112 AATTATGCTGAA-----------AAGGGAACCAACTCGTCCCTAGGGGAATACGTTTTC-AGGA---------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   224905 186 +   720316 I
e cb4.chrX              17239948 350 - 21540570 I

a score=2421.000000
s ce10.chrX              2496771 6 + 17718866 CTACCT
s cb4.chrX              17240298 6 - 21540570 CTaccg
i cb4.chrX              I 350 C 0
s caeRem4.Crem_Contig15    80261 6 -  1794024 CAACCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102569 6 +   484378 CCATCC
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3221384 6 -  4147112 Ccatct
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold18213   224905 186 +   720316 I

a score=-9131.000000
s ce10.chrX              2496777 57 + 17718866 -------------CGTTTCAAAAAATGCTAAT--------AACGGGTTGAAATTGTATGGCGGACGCAGAATATAGTT
s cb4.chrX              17240304 57 - 21540570 -------------agcttcagactcctgaaaatggatttAAATATCCTAAAATCAT-------acgaaaaaca-agtt
i cb4.chrX              C 0 I 290
s caeRem4.Crem_Contig15    80267 43 -  1794024 -------------TTTTGTAAACACT--------------AGTAGCCCTTGATAtt-------agcaaaaaaa-actg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102577 52 +   484378 CCTTTCTATGGGTAATTGCACCTTTTTGCAAA--------AGCGTctagaaa-----------actaaaaa-------
i caeSp111.Scaffold582  I 2 C 0
e caePb3.Scfld02_0       3221390 103 -  4147112 I
e caeJap4.Scaffold18213   224905 186 +   720316 I

a score=-2750.000000
s ce10.chrX              2496834 34 + 17718866 GAGTTACCAAAATTTTCGGTACTTGTGTAATATA
s caeRem4.Crem_Contig15    80310 13 -  1794024 ----------------aagttctcagaaa-----
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    102629 21 +   484378 -----acaaaaa---ttggttGTAGTAGA-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3221390 103 -  4147112 I
e caeJap4.Scaffold18213   224905 186 +   720316 I
e cb4.chrX              17240361 290 - 21540570 I

a score=-138.000000
s ce10.chrX              2496868 20 + 17718866 CATAGCCCAGATTTTACGTT
s caeJap4.Scaffold18213   225091 14 +   720316 CATAACCAAACGTT------
i caeJap4.Scaffold18213 I 186 C 0
e caePb3.Scfld02_0       3221390 103 -  4147112 I
e cb4.chrX              17240361 290 - 21540570 I
e caeSp111.Scaffold582    102650  0 +   484378 C
e caeRem4.Crem_Contig15    80323  3 -  1794024 I

a score=-36270.000000
s ce10.chrX              2496888 211 + 17718866 ---------------ATTCTTTTTCTCTATATT-TGACGTAGGATTAGTGGTTTTGGATGCCtaaaaaattaataaaattttaaaatttCACGTTCAACTACATAAAACAA-CAGTTTATAACAAAATGAATGGAAAA-AGTATTGGAAAATGTTTTTGGGTTAGGTACACTACACAAGCACTAACATTTCATCATTGGCTAACTTACATGTGTATGCCAAATGCGC--GT
s caeRem4.Crem_Contig15    80326 107 -  1794024 ---------------g----ttgattggATACCATAAATTATGATT-----------------------------TATTC---------------------------ATGA-GTGTTCACATTCAAACCGTTGCATAgcaatacaaaaaaa--------------------catacaa-----------------------aaccCA---GCATATACCAAATGCGCGT--
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    102650 127 +   484378 -----------------TTTCTCAATCAAAACTGTTACCTATTATTA---------------CAAA---------TAACC----------------AACC-----AAATGC-GCGTATATAATTAGATTGGTGGAATG-AATGAACGC-AT---------GCCTGACTCGTCATACCA-----------------------AACTAA---TCGGATACCACCTATAT----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221493 146 -  4147112 ---------------gttttttttttgaaaaccgttaCCTATAATTA---------------CAAATTGGTAACCTAACCCTCGCGTGACATG---AACC-----AATTGCTGCGGATATAATTAAATTTGTGAAACG-AACGCATGCAAA---------GCCAGACTCGTC-----------------------------AGCTAA---TCGGATACCACCC-CGT----
i caePb3.Scfld02_0      I 103 C 0
s caeJap4.Scaffold18213   225105 123 +   720316 ACTAAACACAAACGCACTCTCCAAATGCGCACA-TGTATTATAATTA----------------------------GATTT---------------GAAAT-----GAACGA-TTGCATACATC----------------ACCAAATGCCAG---------TCTGTCTCCAACCGAAAC-----------------------AGCTAA---TCGGATACCACCTG-------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17240361 290 - 21540570 I

a score=417174.000000
s ce10.chrX              2497099 1024 + 17718866  
s cb4.chrX              17240651 1015 - 21540570  
i cb4.chrX              I 290 I 129
s caeRem4.Crem_Contig15    80433 1159 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    102777 1047 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3221639 1110 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   225228 1112 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=2807.000000
s ce10.chrX              2498123 29 + 17718866 ------------GGGACCTCACCGGTCGTACAGTAATATTG
s caeRem4.Crem_Contig15    81592 23 -  1794024 ------------------TCTAGCATTGTACAGTAATACAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    103824 24 +   484378 -----------------TTCCCGAGTTGTACAGTCATATTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3222749 18 -  4147112 -----------------------AGTTGTACGGTAATATTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   226340 41 +   720316 AGCAGTCAGGTCGTCATGTTTAATGTCGTACAGTTAGAACG
i caeJap4.Scaffold18213 C 0 I 8
e cb4.chrX              17241666 129 - 21540570 I

a score=-8242.000000
s ce10.chrX              2498152 101 + 17718866 C-GCTGGCCACACAA--CATGGTCTTCTGAATTGTGAAACAAGCGATGAGCGGCCGGCTGGGAGCATGAAAT--GAAGAAAAATAAAAAATTCTGCTTCGGAAATT
s caeSp111.Scaffold582    103848  75 +   484378 CTTTTGACCATTCAA--AACGTTTCTCTAAAGCTTGCTTGAAAGGGCAAG-------------ACGTGAAAT--GATCAAAACATCGACACT--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3222767  73 -  4147112 CTTTTTACCGTTCCG--TTTGCTCTTCTGAATTTGTGTATGAAGGACAAG-------------GTGTAATATTCAATTAGCGCGCAGA------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   226389  61 +   720316 -CGCCGTCCGGTCAAAGCTTGCTCATCTACGCTTTTACACTCACTCGAAA-------------GCGTGATTC--AAT-----------------------------
i caeJap4.Scaffold18213 I 8 C 0
e cb4.chrX              17241666 129 - 21540570 I
e caeRem4.Crem_Contig15    81615   0 -  1794024 C

a score=-11279.000000
s ce10.chrX              2498253 52 + 17718866 TTTTTGGGGAAACAGTGAAAATGTTTATGGTGCCAAAATTACCATAGTACAA--
s caeRem4.Crem_Contig15    81615 22 -  1794024 ---------------------TTTTTGGT------TGTTCAGTCCACTC-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    103923 28 +   484378 ------------------GAATTTTTAGTATACAATATTTACCCCA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3222840 19 -  4147112 -------------------------TAGTTTATCGTAATAACGC----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   226450 54 +   720316 TTCCTGTGGAGgcaaaaacgattttttgtgcaaaaaatacACTGTACAGTATAA
i caeJap4.Scaffold18213 C 0 I 53
e cb4.chrX              17241666 129 - 21540570 I

a score=-2977.000000
s ce10.chrX              2498305 42 + 17718866 ATTTTCAAAAAAATTTTTTTTTTTTGATAGTCAAAAAGTGGC
s caeRem4.Crem_Contig15    81637 11 -  1794024 ------------------------------TTTGAAAGTGG-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    103951 11 +   484378 ------------------------------TTGGGATATGG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3222859  9 -  4147112 --------------------------------AGAAGATGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   226504 53 +   720316 I
e cb4.chrX              17241666 129 - 21540570 I

a score=-8859.000000
s ce10.chrX              2498347 47 + 17718866 AATTGTTGTGTTTTTACCAC----TTTTGAAA-AAACTGCAGCACTGTCGCA--------
s caeRem4.Crem_Contig15    81648 26 -  1794024 -------------------------CTTGAAA-AGGTCCCAAAGGTATTACA--------
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    103962 27 +   484378 -------------------------TTTGAAACAAATTCTAACAGCATCAGC--------
i caeSp111.Scaffold582  C 0 I 18
s caePb3.Scfld02_0       3222868 25 -  4147112 -------------------------TTGAGAATGAGT--CAAacgtattttt--------
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18213   226557 53 +   720316 GATTCTTGCGTACTTTTCGCGCCTCTCTGAAA-------AAAGAATATCTTCCTGTTAAA
i caeJap4.Scaffold18213 I 53 C 0
e cb4.chrX              17241666 129 - 21540570 I

a score=-948.000000
s ce10.chrX              2498394 22 + 17718866 --------TGTTCGAA-----------------TCAAT---ACATTGTTT-
s caeJap4.Scaffold18213   226610 51 +   720316 TGTCTAGGTGTCTGAAGTCTTCTGAAAACAATTTCaactgaaaaatatttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3222893 13 -  4147112 I
e cb4.chrX              17241666 129 - 21540570 I
e caeSp111.Scaffold582    103989 18 +   484378 I
e caeRem4.Crem_Contig15    81674  9 -  1794024 I

a score=-13233.000000
s ce10.chrX              2498416 64 + 17718866 AAGTATCGATATTAA-----------AAACATGTGTATATCAAAAAAAGTAGTTTTTTTTttttttttttgatcg
s caeRem4.Crem_Contig15    81683 28 -  1794024 aaataacaataataa-----------aagCTTGTGAAAg------------------------------------
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582    104007 10 +   484378 --------------------------aaatttttca---------------------------------------
i caeSp111.Scaffold582  I 18 C 0
s caePb3.Scfld02_0       3222906 22 -  4147112 ---TGAGACT----------------AAACTTATCACAATC----------------------------------
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18213   226661 71 +   720316 ctgtAACAATGCCAAGAGCACGGATGATGCTCATGTCCGTTGTCaacaacattattttttttttgtgaatg----
i caeJap4.Scaffold18213 C 0 I 245
e cb4.chrX              17241666 129 - 21540570 I

a score=-12983.000000
s ce10.chrX              2498480 200 + 17718866 acggcttccaaaaaagtggcaaaaactgagtaattacctctatttgaaataaagaaaCAATGAAATCAAAAAATGTCGGCTCTACTTTAAATTTGAATTTTAAACTTGAAAATTTCAACTTGAAACAGTGTTTTTAATTTTAAAAGAAGTAATA--TTGCCACTTTTGAACAGCTTATATGTAACGCCACACAATTTTTCAT
s caeRem4.Crem_Contig15    81711 104 -  1794024 ------ctcaaa-------taaaaacaatgttact-tttttgtctgaaatatgaa----------------------------gttttaaaagacaatc--------------------------------------------tgaaaaccaaatcttgttgctttttttttggttttctat------------gCTTCCTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104017  79 +   484378 ------ttagaa-------aaaaaaca------------tttttagaagTGCAAA----------------------------GCAGTAAAACCGAATC---------------------------------------------TGAATTAACA--TTGTTGCTTTCTCAA-----------------------GCTCGTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3222928  98 -  4147112 ----CTTTAGAATGGGTCTACAGAATA----------------TGAAAGTGCAAT----------------------------GCCATAGAACCTAATC--------------------------------------------AAGAAACCACATCTTGTTGCTTTTTCGgtggtttttctt------------tcttttcg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   226732 245 +   720316 I
e cb4.chrX              17241666 129 - 21540570 I

a score=-3298.000000
s ce10.chrX              2498680 18 + 17718866 ---CAACAAAAAAAGCTGACC
s caeRem4.Crem_Contig15    81815 16 -  1794024 ---CGCAAAT-AGAACCGCC-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104096 16 +   484378 ---CTTGAAT-CCAACCGCC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3223026 17 -  4147112 ---ctAGAATAAAAACCACC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   226977 18 +   720316 CGGCTTGCC--AAATTCGCT-
i caeJap4.Scaffold18213 I 245 C 0
e cb4.chrX              17241666 129 - 21540570 I

a score=156158.000000
s ce10.chrX              2498698 354 + 17718866  
s cb4.chrX              17241795 333 - 21540570  
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig15    81831 407 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104112 393 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3223043 415 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   226995 459 +   720316  
i caeJap4.Scaffold18213 C 0 I 87

a score=40483.000000
s ce10.chrX              2499052  82 + 17718866 TATTGACTGAAGAAATGTGT--------------------TGA-GAGAAGTGAAGCGTCCAAACAACTTGATTGAGTTACATTC-TATCACTATTGAATCGGTT---
s cb4.chrX              17242128 100 - 21540570 TATTGACTGACGaattgtgtgtgtgtgtgtgtgtgtatgaGGG--ATGAGGGATGTGTCCAAACAATTTGATTGAGTTACATTTGTAACACTAAGGAATATC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    82238  82 -  1794024 TATTGACTGACGAAATGTGT--------------------TGG--AGGATAGATGTGTCCAAACAATTTGATTGAGTTACATTC-TAACACTACAGCATCGCCG--A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104505  85 +   484378 TATTGACTGACGAATTGTGT--------------------CGGGAAGGATGGATGTGTCCAAACAATTTGATTGAGTTACATCC-TAACACTAAAGAATCGGTG-GC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3223458  83 -  4147112 TATTGACTGACGAATTGTGT--------------------TGG---GGATGGATGTGTCCAAACAATTTGATTGAGTTACATTC-TAACACTAAAGAATCGTCGCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   227454  87 +   720316 I

a score=97029.000000
s ce10.chrX              2499134 231 + 17718866 GAAGAGAAAG------AAAACG-CGAAAGGGAATTG---GTGAAGCCTGC--CTACTTAACCGCAGCCATTATGC---GTTGTAATTATCGGATTT-----TTTGCAGTTTACTATTCCCGCTAATAGG-CGCGA--TGC-----TGGTGTGTAGT--TGGA-----------------------------------------------AAAACAACACTTATAAT--------------------TTTCAGGTTGACTTCGATCGCGCTGAGAAGCTGGCTTCCCGACTAGGAGTCTCACTGTATGAAGTGTCTGCAAAAACTGGTA
s cb4.chrX              17242228 258 - 21540570 GAAGGCAGGGCCCAACACATGAAGAAACGAAGACAGG--GGAAAA---AC--ATCCTTAATCGTAACTATTATGCGCTGTTGTAATTATCGGATT------CCTGCA-TACAACA-CTCCATTAATGGAGTGCGG--TGTGGC--GGAATCGTAATAGTGAA------------------------------TGAGATGAAT------GAAAAACATGACTACTTA--TGCA-------------TTTTCAGGTTGACTTCGATCGCGCTGAAAGACTGGCTTCACGATTGGGCGTTTCACTATACGAAGTGTCGGCGAAAACGGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    82320 240 -  1794024 GAAGAAAACG------GCAAGAATGAATAAGGAGGGGCTGTGAAA---AC--AAACTTAATCGCAACTATTATGC---ATTGTAATTATCGGATT------TATGCATTACA-----TCCACTAATGGA-TGCGGCCTGCAGCA-GGAAACGTAA---TGAt------------------------------tgtaatgaa--------aaaaacatagtGACGGA--------------------TTTCAGGTTGACTTCGATCGCGCTGAAAAACTGGCTTCGCGACTTGGTGTATCCCTCTACGAAGTATCTGCGAAAACTGGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104590 235 +   484378 GAAGAAAACg------ggaaaagcagaaaaagggaa---acgaAA---AC--ATACTTAATCGCAACTATTATGC---GTTGTAATTATCGGATTTCTCTGTATTCATTCC------TCCACTAATGGG-TGTT-GCTGCAAATGAGAGATGTAATGGTGG------------------------------------------------GAAATGACACTTATGGA--------------------TTTCAGGTGGACTTCGATCGCGCTGAAAAACTTGCTTCACGGTTGGGCGTCTCCTTGTATGAAGTGTCTGCAAAAACTGGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3223541 230 -  4147112 GAAGAAAACG------GGAAGA-CAGGAAAAAAGGG---GTGAAA---AC--ATACTTAATCGCAACTATTATGC---GTTGTAATTATCGGATT------TATGCATTCTG-----TCCGCAAATGGA-TGTTGGTTGTAATAGTGAATCGTAATAGTGG------------------------------------------------GAAATGACACTTATGGA--------------------TTTCAGGTGGATTTCGATCGTGCTGAAAAACTGGCTTCAAGGCTTGGCGTCTCTCTGTACGAAGTATCGGCAAAAACtggta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   227541 297 +   720316 ---gaaaaag----------------aaaaaaacgg---gtGAAA---ACAGACACTTAATAGCAACTATTATGTG--GTTGTAATTATCggatgtttct-tttttcttcttcttttacCATTAGTTAA-TGCAACCCGgaatg-gaaaatgta-tagtgaattggaagtactgaattgaattgaattgaattgaaatgaattgggagagaaatgattctaaagcaactgaaattgattTTGAGTCTTTCAGGTTGACTTTGATCGTGCTGAGAAACTTGCTTCCCGACTAGGCGTCTCCCTTTACGAAGTTTCAGCGAAGACTGGTA
i caeJap4.Scaffold18213 I 87 I 43

a score=-1638.000000
s ce10.chrX              2499365 9 + 17718866 CGTTTTCTT
s cb4.chrX              17242486 5 - 21540570 AGGGT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    82560 8 -  1794024 AGACTCTA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    104825 9 +   484378 AGGGTTTTT
i caeSp111.Scaffold582  C 0 I 259
s caePb3.Scfld02_0       3223771 9 -  4147112 aggtttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   227838 43 +   720316 I

a score=-2584.000000
s ce10.chrX              2499374 14 + 17718866 TC----ATTTCGAAAAAA
s cb4.chrX              17242491  6 - 21540570 -------TTTTAC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    82568 14 -  1794024 TT----ATTTTAAAAGAA
i caeRem4.Crem_Contig15 C 0 I 215
s caePb3.Scfld02_0       3223780 17 -  4147112 ttgaggattctAAAGTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   227838 43 +   720316 I
e caeSp111.Scaffold582    104834 259 +   484378 I

a score=748.000000
s ce10.chrX              2499388 13 + 17718866 AATAATGAAAAAA
s cb4.chrX              17242497 13 - 21540570 TATTGAAATGaga
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3223797 13 -  4147112 AATTATaacaaaa
i caePb3.Scfld02_0      C 0 I 334
e caeJap4.Scaffold18213   227838 43 +   720316 I
e caeSp111.Scaffold582    104834 259 +   484378 I
e caeRem4.Crem_Contig15    82582 215 -  1794024 I

a score=838.000000
s ce10.chrX              2499401 203 + 17718866 AAATAAAGGGGTTAACTTTCCGAGtatattttaatt---taaaaagtataaaattaaGATTTTCACACATATTTTGATGAAA--CTATGGTTTAAAACATTTTTGAAGGTGGAATAGTGCCAGATATTCTTGTAAGACTTTT----CAACAACTTTTTGAAAAAACTTTCATTAGC-----------AGTCAAAATGTGTCAATT------------ACTGAGGCTTTGCCATTT
s cb4.chrX              17242510 218 - 21540570 gaatcatttgaatagttttattagaaaattgtAATTCACTAAAATGTGTAATGATAA-----TTAGATAAGTCATGAAGAAAAACTGCGACTTGAATTGTATTGGAGATTTAGGTaatg-----------tgaaaaaattctaCCGCAAGATTTTTATAAAGAAACCTAC-CTAGCTTtcagctttgagccaatttatctcgattcctgtaaaaaatactgaaagtttgtcaact
i cb4.chrX              C 0 I 113
e caePb3.Scfld02_0       3223810 334 -  4147112 I
e caeJap4.Scaffold18213   227838  43 +   720316 I
e caeSp111.Scaffold582    104834 259 +   484378 I
e caeRem4.Crem_Contig15    82582 215 -  1794024 I

a score=0.000000
s ce10.chrX              2499604 95 + 17718866 TTTTTGCAATCTAAGTAGATCATAAAATTTGAAGGAAGAAATTTTATTTGATCGACACAAAGTGGTAAAACCGGAGACTCCcaattttccaaaaa
e caePb3.Scfld02_0       3223810 334 -  4147112 I
e caeJap4.Scaffold18213   227838 43 +   720316 I
e cb4.chrX              17242728 113 - 21540570 I
e caeSp111.Scaffold582    104834 259 +   484378 I
e caeRem4.Crem_Contig15    82582 215 -  1794024 I

a score=-4001.000000
s ce10.chrX              2499699 667 + 17718866  
s cb4.chrX              17242841 682 - 21540570  
i cb4.chrX              I 113 C 0
e caePb3.Scfld02_0       3223810 334 -  4147112 I
e caeJap4.Scaffold18213   227838  43 +   720316 I
e caeSp111.Scaffold582    104834 259 +   484378 I
e caeRem4.Crem_Contig15    82582 215 -  1794024 I

a score=-647.000000
s ce10.chrX              2500366 2 + 17718866 TT-
s cb4.chrX              17243523 1 - 21540570 -t-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    105093 2 +   484378 -tc
i caeSp111.Scaffold582  I 259 C 0
e caePb3.Scfld02_0       3223810 334 -  4147112 I
e caeJap4.Scaffold18213   227838 43 +   720316 I
e caeRem4.Crem_Contig15    82582 215 -  1794024 I

a score=233303.000000
s ce10.chrX              2500368 276 + 17718866 TTCCAGGGATAAACTGCGAAGAAGCATTTCACACTTTGACAGCTGCAATGAGAGAACGAATAACGGCTGGCAGTATGCATTCGGATGAGTCGGATGACAACGAGGTTAGTAAG--------------------ACAGACAA---TATCCGGATG-CAATTTATATGCTAAT------------TATCTTTCAATAAATATGCCATTTTT-AGGAGTTTTCATCGGCCTTCCACGTTGACGGAGTCATCAAAAGCGATAAAGGGAAGTTCACATCATGCTGTGCAAGTGCTCCGGAACCCGCCTTTGTCTGATT
s cb4.chrX              17243524 275 - 21540570 tttcaggaatcaaCTGCGAGGAAGCCTTCCACACACTGACGGCTGCAATGAGAGAACGACTAACGGCTAGCAGTTTGAACTCTGACGAATCGGATGACAACGAGGTTTGTTTA--------------------------------GTCTCGTCT-CAATTTATATGCTAATT----TTCTTCATCACTCATTgcaaaacaatatttttc-aggaattctcATCGGCATTCCATGTGGATGGGGTCATCAAAAGCGACAAGGGCAAGTTCACGTCGTGCTGTGCAAGTGCACCGGAACCGGCGTTCGTCTgata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    82797 280 -  1794024 TTTCAGGAATCAACTGCGAAGAAGCTTTCCACACCCTGACAGCTGCAATGCGAGAACGACTAACAGCTAGCAGTATGAACTCGGACGAGTCGGATGACAATGAGGTTTGTTGGA-------------------TGAGACAA---TATCCGGTCTCCAATTTATATGCTAAT-----------ATCTCTCCCAATAATAAAACGTTTTTCTAGGAATTCTCTTCTGCCTTCCATGTTGATGGAGTCATCAAAAGCGACAAGGGGAAGTTCACATCATGTTGTGCAAGTGCGCCGGAGCCCGCGTTCGTTTGATA
i caeRem4.Crem_Contig15 I 215 C 0
s caeSp111.Scaffold582    105095 276 +   484378 ttccaggCATCAACTGCGAAGAAGCCTTCACAACACTGACAGCTGCAATGCGAGAACGACTAACCGCTAGCAGTTTGAACTCGGACGAGTCGGATGACAACGAGGTTAGTTAGT-------------------GGAGACAA----TTTCCGGCT-CAATTTATATGCTAAT------------tgtcttttcaaaacaatacGTTTTCT-AGGAGTTTTCATCTGCTTTCCACGTTGACGGGGTCATCAAAAGCGATAAGGGAAAATTCACATCGTGTTGTGCCAGTGCTCCAGAGCCTGCatttgtttgatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3224144 276 -  4147112 TTTCAGGAATAAACTGCGAAGAAGCCTTCCATACACTGACAGCTGCAATGCGAGAACGTCTAACTGCTAGCAGTTTGAACTCTGACGAATCGGATGACAATGAGGTTGGTTAGC-------------------GGAGACAA----TTTCCTTCT-CAATTTATATGCtaat------------tttcatcacaaaacaaAGCGTTTTTC-AGGAGTTCTCGTCTGCTTTTCATGTTGATGGTGTCATCAAAAGCGATAAGGGAAAGTTCACATCATGCTGTGCAAGTGCTCCAGAACCCGCATTTGTTTGATA
i caePb3.Scfld02_0      I 334 C 0
s caeJap4.Scaffold18213   227881 309 +   720316 TTTCAGGAATCAATTGTGAAGAGGCTTTCCACACTCTGACGGCTGCTATGAGGGAGCGAATAACGTCTGGCAGTATTAACTCGGACGAATCGGATGACAACGAGGCTAGTTATTTAGAGCGGGAAAAGAAATAGGGAATAAGGGGATTTC--CT-CAATTTATATGCAAATTCTTCTTTTCGGTTTTTTATACTAATAATGAGCTTTTC-AGGAGTTTTCATCTGCTTTTCATGTCGATGGAGTCATCAAAAGCGATAAGGGAAAGTTCACGTCATGCTGTGCAAGTGCCCCGGAACCCGCATTCGTGTGATT
i caeJap4.Scaffold18213 I 43 I 749

a score=35786.000000
s ce10.chrX              2500644 348 + 17718866 TAAACCTTGACTTAAACATATCATTCATTTAGTCATTCATCACAATCTCGATAAAACACTTCGATCATTTGATAATCTTTTTTTTTAA---ACGTGCTTTAATTATTTT-TAAG--TGTGCTTGTC----AAAACCATTTCAAGGTGCTCTGCCGT-TATGTGGTGCAATTAAAAAACCCCCTTAACATTTGTATGCTTCTTACTTGTTAGCACAATATTTTTTCCCTCATCATCTTTTTTTAC-ATTGGTCATTTGCACTTTCATGACG-TCATTGGAACGT------------CACTATGTTTTATCTTGAATTCTCCAATTTCGGGTATTAAGTTT---AAATTTACTATTATGATTGATAAAT-----TGTAATTTT
s cb4.chrX              17243799 214 - 21540570 tc------------------------------------------------------------caaaaatcaa-----tttttcacttaTCCAAATGCTTTAATCTCTTTTTGAATGTGTGCTTGTCAAGAAAAACCGTTAATAGGTGCTAT-TCGT--------------------------------------------CCA----------------AATTTGATC------CTTTTTC----TCTCGTCATatactttttcc------ttttc---------------------tttcgtCTTA-AttgaattctcgattttcgggTATTTTGTATCCAATATTGATT---ACActtcatgaaaattttgctgatgCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    83077 260 -  1794024 CCT--------------------------------------------------------TATCAGAAAATAAC--tctttttaaattgaaaatatgcTTTAATCTTTTTGTGAA--TCTGCTTGTC----AAAACCGTTAATAGGTGCTATGTCGTTCTTGTG-----TTTTACAAACT-------------------CCCTG----------------AATTTGTCccatca-ctttttcttcatttggtCATTTCCACTTTCATGacg-ttttcaaaacgtcatcACAATCGCTACTATGTTTTATATTAAATTCTCGACAATCGGGTATTGCGTGTTCAATATTCATT----------ATGAAG-----Tctaattct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    105371 257 +   484378 t----------------------------------------------------------tcttatcattttat--cttttttcacagA---ATATGCTTTAATCTCCTC-AGAG--TGTGCTTGTC---AAAAACCGTTTATAGGTGCTGTACTGT-TTTGTG-----Cttgataactt---------tttgtaacattttca----------------tatttctctcATCATTGTCTTCT---TTTGGTCATCTGCACTTTCATGGCG-TTTTTATTCCGTCATAACA-----TAATATGTCTTACTTTGAATTCTCGAATGTCGGGTATTGCGTGTCCTATATTCATC----------ATGAAG-----TCTaattct
i caeSp111.Scaffold582  C 0 I 1395
s caePb3.Scfld02_0       3224420 261 -  4147112 CAA--------------------------------------------------------CTCCATTagattat--cttttttcattga---atatgCTTTAATCTCTTT-TGAA--TCTGCTTGTC----AAAACCGTTAATAGGTGCTGTGCTGT-TTCGTg-----ctttgaaatctt-----gaatttgTACCATCTTTG----------------TAtctttctcatcatttttttc----tttggtcaATCGCACTTTCATGACGTTTTTTGGAACGTCATTGC------TATTATGTCTTACATTGAATTCTCGAGTGTCGGGTATTGCGTGTTCAATATTCACT----------ATGAAG-----TGTAATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   228190 749 +   720316 I

a score=1173.000000
s ce10.chrX              2500992 20 + 17718866 CAAAT-ATTTATTTTTATACA
s cb4.chrX              17244013 20 - 21540570 -AAATATTTTATTGTTATCCA
i cb4.chrX              C 0 I 511
s caeRem4.Crem_Contig15    83337 19 -  1794024 -aaat-ttttatttccacaAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3224681 18 -  4147112 ---ACATTTTATTCCAAAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   228190 749 +   720316 I
e caeSp111.Scaffold582    105628 1395 +   484378 I

a score=428.000000
s ce10.chrX              2501012 34 + 17718866 ---ATTCACAGAGAGAA-------AAAAGAGAGATGGAATATAT----
s caeRem4.Crem_Contig15    83356 34 -  1794024 ---AACcacagag-----------aagaagagaatagatTAGATATGG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3224699 44 -  4147112 ATTTACCACACAGAATATTGATGCAAGAAGGAGAGGAAATAAAT----
i caePb3.Scfld02_0      C 0 I 1817
e caeJap4.Scaffold18213   228190 749 +   720316 I
e cb4.chrX              17244033 511 - 21540570 I
e caeSp111.Scaffold582    105628 1395 +   484378 I

a score=-1229.000000
s ce10.chrX              2501046 270 + 17718866 GG----ATATGAGGTTGCAGC-ATACGATACGAAAAAATATTAC----------TTTTGGAATGTG---TTGTACAACGCAGTAATAGCTACAATTAATCATGAGAAATTGGAAAAATGTGCATATATTGAGATGGGTAGAAATTTTTTTTAA-------TTGAA--------------------------TAATAGAAAT----------CGATTTTCTTTTGAACA---TTGAATTGAATTAATTACTC-----------------GAAAAGGTTGCACGCTTTCAACTTATTAACAGAGCAAAAAATGTCATTTACATACAA-AGCGATACATAGAA-----ACAAAATTAGAA
s caeRem4.Crem_Contig15    83390 333 -  1794024 GAGAACATGTTAAATTACGatgacaaaaaagagaaaaaaattaccGCGACTAATTACTGGAATGTGTTTTTGTG------GGGAAAAGCTAACATCA-------------GGGTGAGTATATATGTAATACAATGGGGAGGAGATATCctcaaaaatattatgaaCATAGGGCAGACTGGTAGCAAGCAACTAAGAAAAATGTATGCgtgaagattttttcttaaagAAGTTATGGTTGAGTTTGTCGTTCCTTTTTTGGAAGCAAGAGAAAGAGTGAGAATATT---ACATATTAAAAATACATGAA--GTCAATTACATATAATTACAATTCTGAGAGCTGATACAGAATCGGAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   228190 749 +   720316 I
e cb4.chrX              17244033 511 - 21540570 I
e caeSp111.Scaffold582    105628 1395 +   484378 I

a score=-396.000000
s ce10.chrX              2501316 114 + 17718866 -CTTATGAAAACAAAAATCTCGTCTAAACTTTTATTTT------CAATTGTCCGAACCCAACCCAGAAGAACCA--------GATCCAGAAGTTGACTGTCGTCGAAAACGTTTCACAATTCTCCGGTA
s caeRem4.Crem_Contig15    83723 128 -  1794024 ccggagaaaaaaaatagaatt-tcacaatttctagATTGAAATTTGATTGGGTGATCTTAAATCAGATTATTTTATCAGGCCTATTTTTTGGCTGGTTGACGACGGATCTTGTTGAGGAATCGTTGGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    107023  83 +   484378 -CTCATAGAAAGATCAGCCTC-TATAAATTTTTACATT--------------------------------------------CATTGTTCGGATGGTTGACGACGGAATTGGTTGACTACGCGGCGGCA
i caeSp111.Scaffold582  I 1395 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   228190 749 +   720316 I
e cb4.chrX              17244033 511 - 21540570 I

a score=25456.000000
s ce10.chrX              2501430 122 + 17718866 TCCAGAGGTTAGAACTCTTATTGAACCTCTACGGAAGCGAGTCATTGCGGATGCACGTCCACCGTCATTTCTGTAGACAAGAGAGAAGAAACGGAGATTGAATTGATCCTCTGCGCCATCTG
s caeRem4.Crem_Contig15    83851 122 -  1794024 TCCAGATGAAAGAACTTTCATTGATCCTCTGCGGAAACGAGCAAGCGATCCAAGACGTCCACCATCGTTGCGGTAGACAAGGGTGAAGTAACGAACGTTGTATTGGTCTTCACGTCCacctg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    107106 122 +   484378 TCCTGAGCGGAGGATTCTCATCGATCCTCTACGGAGGCGAGTCAATGGTCCGGCACGTCCTCCGTCGTTACGGTAGACAAGTGAAAAATGACGGAAGTTGAATTGGTCTTCCTCGCCgtctg
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   228939 118 +   720316 TCCTGA----AGTTTTCTCTTTGTTCCCCGGCAAAATCGAACAAATGGAGCCCTTCGGCCACCGTCTGTACGGAAGACCATTGTGAAGTTACGGATGTGGAATCGATCTTCATCTCCTACTG
i caeJap4.Scaffold18213 I 749 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17244033 511 - 21540570 I

a score=3.000000
s ce10.chrX              2501552 2 + 17718866 AA
s caeRem4.Crem_Contig15    83973 2 -  1794024 ga
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   229057 2 +   720316 CA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17244033 511 - 21540570 I
e caeSp111.Scaffold582    107228 0 +   484378 C

a score=91.000000
s ce10.chrX              2501554 1 + 17718866 A
s caeRem4.Crem_Contig15    83975 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 55
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   229059 0 +   720316 C
e cb4.chrX              17244033 511 - 21540570 I
e caeSp111.Scaffold582    107228 0 +   484378 C

a score=0.000000
s ce10.chrX              2501555 482 + 17718866 CGACATAGCAACATTAAATAAGAAAATTATTGAAACCCATTCTTATGATGCTAAAATGATCAAATACCATAACAAATTTTTTCTAAAAAATTTTGAACATTTTTCAAGAGGTAGTGAAACTCACTATGTTGGCCACTTTTCAATAAATCTAAAGCAATGTAACTGGTTTGAACCTATAATATATAATTAGAACATACAACCAATTTTCCAAAATATTTTGAAACGTTTCGTTGTATAGCTAAACAATGCTCTCGACATTTTTGGTTTAAAATTAGAAATCTTTGCTGCAGACGAATTGTGTTTGAAAACAATTAGAAACTTGAAATTACGGTAGTCGACAAAAAAATATTTTTCGGAATGTTGTTAAAGGTGGAGTAACTGATAAATGGTCATTTTAGCAATTTTAGCCATTTTTAGCAATTTGATTTTTAATAATTTTCCCCACTATTAATTCTGAAACTCTGTTTGAGCCATTAAACTTC
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   229059   0 +   720316 C
e cb4.chrX              17244033 511 - 21540570 I
e caeSp111.Scaffold582    107228   0 +   484378 C
e caeRem4.Crem_Contig15    83976  55 -  1794024 I

a score=223.000000
s ce10.chrX              2502037 31 + 17718866 AAACATTTTTTTTAAATCAGAATTTCTATTA
s caeSp111.Scaffold582    107228 27 +   484378 aaacatttttatgaaCTCA----TTCAAATA
i caeSp111.Scaffold582  C 0 I 3
s caeJap4.Scaffold18213   229059 30 +   720316 AAAAAGTTACTTAAGATCATAACTGTAAGG-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17244033 511 - 21540570 I
e caeRem4.Crem_Contig15    83976 55 -  1794024 I

a score=-1888.000000
s ce10.chrX              2502068 13 + 17718866 ---TTATCTAAATTCC
s caeRem4.Crem_Contig15    84031 13 -  1794024 ---TTATGGATAATCA
i caeRem4.Crem_Contig15 I 55 C 0
s caeSp111.Scaffold582    107258 13 +   484378 ---TTTAGGAAAATTT
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   229089 13 +   720316 TGATTTCAGTTAC---
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17244033 511 - 21540570 I

a score=35710.000000
s ce10.chrX              2502081 145 + 17718866 AACTCACAATAAATCACTTCTTCACTCTCCACAGCTTCTGCAATCAGCTTATAAAGACACTTATCCTCGTCGTGATTCAAAGCATCAGTTCCAGCTCTTCGACATCGCATGCAAATTTTTATCTGAAAATCATAC--------AGA-------------TTTTAAA-
s cb4.chrX              17244544 138 - 21540570 AACTCACAGAAAATGACTTCTTTGGTTTCAACAGCATCGGCGAAGATCTTGTAAAGACATGTCTCCTTCTCATGACTACCAGCGTCGGTTCCAGCGCGACGGCAACGGCCACAGACTGACATCTAAAA---------------TAA-------------CTTTAAG-
i cb4.chrX              I 511 C 0
s caeRem4.Crem_Contig15    84044 142 -  1794024 TACTTACAGAAAATAACTTCGTTGGTATCGACAGCATCAGCGAACATCTTGTAAAGGCATCTCTCCTCCTCATGCTCAATGGAATCGGTTCCAAGTCTGCGGCAACGCATGCAGACGGACATCTAAAACCA-----------TTCA-------------TTTTAAT-
i caeRem4.Crem_Contig15 C 0 I 20
s caeSp111.Scaffold582    107271 153 +   484378 TActtacaaaaaatgatctCATCGGTTTCGGTAGCCTCGGTTAACAGTTTGTACAAGCACATGTCATCATCGTGtttttttGCTTCGGTTCCGGCTCGACGACAACGCATGCAGACGCTGagctaaaaataattttgtttaGATCA-------------TTGTAGA-
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   229102 149 +   720316 ---ATACCAAAGATGACTTCGTCACTTTCGGTTGCCTCGGCCCACATCTTGTAGAGACACTTGTCAGTGTCGTGGATTGGAGCAGCGGTTTCCAGCCTTCGACATTTCATGCATACCACCATCTGTAA---------------TGAAACGGTGAAACTTTtgtaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I

a score=-1027.000000
s ce10.chrX              2502226 18 + 17718866 ACTACCC-----------AAACAAAACAC
s cb4.chrX              17244682 15 - 21540570 AGTATTT--------------TAGGGTAT
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold582    107424 15 +   484378 AATATCT--------------TGAAGTAC
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold18213   229251 29 +   720316 actatttttttttatatttggcAAAGCTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeRem4.Crem_Contig15    84186 20 -  1794024 I

a score=13958.000000
s ce10.chrX              2502244 132 + 17718866 TCTCACCGCCAGATTTTCCCAGACACGTTCGGCTTCCTTTTTGCAATAGTAGAGCTGAACTTGCTGTTTGTTCGTGAACTTTGGCATGTTTCGAGCAACTT---CAATCTCGGTGTTTTCTCTGCGGAAGTTCTG
s cb4.chrX              17244707 132 - 21540570 CATTACATCCAAATGATTCCAGATGCGCTCTGCTTCGATGCGGCAGAAGTGGTCAGTAGCCTCACGTCGGTTCTTGAACT---GAGCAATGCATCCAGTCTTGGCAATGGTGGTTCCGTCGCGCTTGAAGTCCTA
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig15    84206 131 -  1794024 CCTTACGTCAAGACTAGCCCAAACACGATCGGCCTCTTGCTTGCAGTAGTAGAATTGAGCTTGACGAGCATTGGCAAATTTCGGGGCATTTTTCATAGATT---CCATAGTGGTTCGGTTTCGACGGAAGCtct-
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    107443 126 +   484378 ------TCCAACTTTTTCCCATAGATTCTCAGCGTCCAATCTGCAGAAATAGAGATGAGCCTCCTTTCTGCTTGAAAACTTCGGGAAGTTCTTTCCGGTTT---CCATTTTGATATGGTTGCGACCGAAGCTCTG
i caeSp111.Scaffold582  I 4 C 0
s caeJap4.Scaffold18213   229280 132 +   720316 ACGTACATCGAGAGAATCCCACAGGAAATCCGCGTGTTCCTTGTAGTAATAGTTACGAGCCACTCGATGGTTCGGAAATGGAAGAAGGTTCCAGAATGGCT---CAATTccaatgtggtctcttgtgAAGTTCTG
i caeJap4.Scaffold18213 C 0 I 900
e caePb3.Scfld02_0       3224743 1817 -  4147112 I

a score=136.000000
s ce10.chrX              2502376 2 + 17718866 AA
s cb4.chrX              17244839 2 - 21540570 AA
i cb4.chrX              C 0 I 473
s caeSp111.Scaffold582    107569 2 +   484378 CA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   229412 900 +   720316 I
e caeRem4.Crem_Contig15    84337 0 -  1794024 C

a score=3265.000000
s ce10.chrX              2502378 173 + 17718866 GAAAAAAAACCA-----TAAGATGACAAAAATAATTATA--------TCCTACCATAAGTGCGTAATCTCCAAAATCCGAATCAACTACAGTA---TCTTGATGTGATCGGAAGC-GCTTGATCGTCTGACCCAAACGGCTTTTTATTATGCGATTGAAAATTGACGAAGAGGCAATTTCATCTTTTGCT
s caeRem4.Crem_Contig15    84337 179 -  1794024 ----aaaaactagtttttaaaatttaaactgtTCTCTTATTTTACTATGTTACCATAAGTGCGTAGTCTCCATAGTCCGCATCGGAAACATTGTTCTCTTGGCTTGGTCTCAGACGTCTAAATC--TTTGACGGATTTGCTCTT--GTATGCGGCTCATGAGCGATG--GAGTCGG-ATCGTCAATAGCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    107571 169 +   484378 ----ATCAATCAATAAGTGAATTTGTAACTGTAAACTTCT-------TGTTACCATCAATGCATAGTCTCCGAATTGAAGATCGACGACGGCG---TCTTGATTTGGTCTCAATC-TCTGGATAAGATTGTCGAATCTGTTC-T--GGAGACGATCCCAGAAGGACG--GTGGCAA-GTCTTCAGCAGTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   229412 900 +   720316 I
e cb4.chrX              17244841 473 - 21540570 I

a score=2659.000000
s ce10.chrX              2502551 86 + 17718866 GGAATGACGATTCTCAAGCA---------CATGCTTCCGTCTCTCTG--AAAATATCAGTTTCGTTCTCATCGTAATTCGTAAATAAAAAAACATAC
s caeRem4.Crem_Contig15    84516 72 -  1794024 GGGATCACAATTTTCAAGCA---------GTTGCTTCCGTTGCTC----TAA--AATAACTTCATCCTTATT----------ACTaaaaaaaTCTGT
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    107740 74 +   484378 GGAATGGTAATTCTCAAGCA---------GAGTTTGCCGTTCTTCTg--taa--attcatttgattgtGATC----------AGTTGAACAAGCTTT
i caeSp111.Scaffold582  C 0 I 6
s caeJap4.Scaffold18213   230312 88 +   720316 GGAAGAACGATCCTCAAACATTCCTCATGCAGGCTACCGAATTTCTGAACAA--AACAGTTGACAATTTGTA-------GAAACTATGATGACTTAC
i caeJap4.Scaffold18213 I 900 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17244841 473 - 21540570 I

a score=16405.000000
s ce10.chrX              2502637 89 + 17718866 CAGTTTGCATTTCTCAATGCGAGTGATGTCATTGTCCCACTCCTTACGGACGTTTTCCATTGCAAACTGGA---------AAA-----TATTTCTGTTTTTTT
s cb4.chrX              17245314 91 - 21540570 CATTTTACACTTCTCAATACGAGTGACATTTGGATCCCACTCCTCACGGTTGTTCTCCACGGCAAACTGAAATC------AAA-----AACCttcatttctt-
i cb4.chrX              I 473 C 0
s caeRem4.Crem_Contig15    84599 88 -  1794024 CAGCTTGCATCTCTCAAGGCGGAGAAGGTTTGGGTCCCATTCCTCGCGATTATTCTCCATCGcaaactga----------ata-----attttttattttctt
i caeRem4.Crem_Contig15 I 11 I 18
s caeSp111.Scaffold582    107820 94 +   484378 CAATCGGCAGGTCTCAATATGACGAATATTC---TCAACCTCTGGACGAACATTCTCCATGATGCACTGAAATA------ATATCTTcaattatcagtttttt
i caeSp111.Scaffold582  I 6 I 1
s caeJap4.Scaffold18213   230400 96 +   720316 CAAGGTGACTTTCTCAAGACGCATCACGTTTGGATCCCACTCTTCTCGCACGTTTTCCATAATTAACTGTAATTAATTGGAta-----cataatttatttt--
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I

a score=-2982.000000
s ce10.chrX              2502726 22 + 17718866 GAACACCATTTAAAAATTTGTG
s cb4.chrX              17245405 15 - 21540570 ----attttttaaaaactt---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    107915  8 +   484378 -ttcacttt-------------
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   230496 17 +   720316 --taaaattcgaaaaattt---
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeRem4.Crem_Contig15    84687 18 -  1794024 I

a score=11550.000000
s ce10.chrX              2502748 37 + 17718866 CACAAACCACTGCAAACTTTTTGTGATATTTTTTTGG
s cb4.chrX              17245420 36 - 21540570 -actGACCACATTGAAAGTGACGTTGTACTTGTTTGG
i cb4.chrX              C 0 I 492
s caeRem4.Crem_Contig15    84705 37 -  1794024 CACATACCACTGCAAAGTTCTTGTAAtatctttttgg
i caeRem4.Crem_Contig15 I 18 I 11
s caeSp111.Scaffold582    107923 37 +   484378 cactGACCACAGCAAGTTCCTTCCAGAATCTCTTTGG
i caeSp111.Scaffold582  C 0 I 8
s caeJap4.Scaffold18213   230513 35 +   720316 --cttaCCACAGTGTAACTTTCGAAGTATCTTTTTGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I

a score=-4451.000000
s ce10.chrX              2502785 31 + 17718866 CACAGGTTCAGTCAAGA----CTTG---------TTGCTCTCCA
s caeRem4.Crem_Contig15    84753 42 -  1794024 CAGCGACTGCAGGTGACTCATCTGGCTCTCCACCGTCCTTTC--
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    107968 33 +   484378 CACTGATTCCGCTAGGATCAACTGG---------ATCCTCTT--
i caeSp111.Scaffold582  I 8 C 0
s caeJap4.Scaffold18213   230548 31 +   720316 TAATGTTTTTGCCACAG--ATTTGG---------AGTCTCCA--
i caeJap4.Scaffold18213 C 0 I 379
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17245456 492 - 21540570 I

a score=8496.000000
s ce10.chrX              2502816 582 + 17718866  
s caeRem4.Crem_Contig15    84795 456 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    108001 507 +   484378  
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   230579 379 +   720316 I
e cb4.chrX              17245456 492 - 21540570 I

a score=195.000000
s ce10.chrX              2503398 34 + 17718866 atccagaaTGTCTTTACACGAGCAATTTAAACTA
s caeRem4.Crem_Contig15    85251 18 -  1794024 ----------------CACAAGTATATCAAACGA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   230579 379 +   720316 I
e cb4.chrX              17245456 492 - 21540570 I
e caeSp111.Scaffold582    108508  0 +   484378 C

a score=0.000000
s ce10.chrX              2503432 83 + 17718866 ATATAAAGTTGAATATTGTagaactttttttttggttgacttccaaaaatataactggcaaaatctaagtaattgtcactttt
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e caeJap4.Scaffold18213   230579 379 +   720316 I
e cb4.chrX              17245456 492 - 21540570 I
e caeSp111.Scaffold582    108508  0 +   484378 C
e caeRem4.Crem_Contig15    85269  0 -  1794024 C

a score=344.000000
s ce10.chrX              2503515 84 + 17718866 tgacagttgttaaaaaac---ttcccaagtttttttaaaagtgtaactttgatatttggtccttttagcactata-----agagtagtttt---t
s caeJap4.Scaffold18213   230958 90 +   720316 TAACCATTGTGAAAAGACACACTCCCAAGctct---aaaattgt--tttttattgtggaaaatttgtcaactatatttaaaaagttattttacAC
i caeJap4.Scaffold18213 I 379 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17245456 492 - 21540570 I
e caeSp111.Scaffold582    108508  0 +   484378 C
e caeRem4.Crem_Contig15    85269  0 -  1794024 C

a score=273.000000
s ce10.chrX              2503599 1 + 17718866 a
s caeRem4.Crem_Contig15    85269 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   231048 1 +   720316 A
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17245456 492 - 21540570 I
e caeSp111.Scaffold582    108508 0 +   484378 C

a score=7115.000000
s ce10.chrX              2503600 37 + 17718866 CCCATAAATCGCATTCAGAAGTCACTTCTGATAACTG
s caeRem4.Crem_Contig15    85270 37 -  1794024 CCCATAAATCACATTCTGGAGTAAGTTTGTTGAGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    108508 37 +   484378 CCCATAAATCACATTCAGGAGTGACTTCTTGACGATG
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   231049 37 +   720316 CCCATAAATCGCTTTCCGGTGAAGCCTGCTCAAACCC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3224743 1817 -  4147112 I
e cb4.chrX              17245456 492 - 21540570 I

a score=1953.000000
s ce10.chrX              2503637 6 + 17718866 ATTGTG
s caeRem4.Crem_Contig15    85307 6 -  1794024 GCCATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    108545 6 +   484378 GTTGCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3226560 6 -  4147112 ATCGTG
i caePb3.Scfld02_0      I 1817 C 0
s caeJap4.Scaffold18213   231086 6 +   720316 ATCGCA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17245456 492 - 21540570 I

a score=19418.000000
s ce10.chrX              2503643 301 + 17718866 CAATTCTGGAGCAATAAAT-------GGAAGAATGTGCAGTGGTGTTTGG-CTGAATGGGAGCCAG------TTCAAAAATTGG---GAGCTTTCAATATCCGAAATTTTGACC---ATATTTTCTTGC---AAGAAAATATTCTTTGTCTGCAAAA---------TCGTTGACCTATTGCGTATATCACTAATTTTTCCGAGTTTCTTACATGAAGCGTCCCATGGCAAAGATTTTGTGCATGCAAATATTCGAGAGCTCTTGTGGCTTGTACCAATACAAGCTTAGTCTGGGACTC------------GTCGTACTTGCCTTTGTCCA---------AAATGTCGTCTGAAA
s cb4.chrX              17245948 294 - 21540570 CAATTCTGGCGCAATGAAC-------TGAAT-------------GTTCT---------GAACCGACATGTCGTCGTGGAGACTGTCATCGCTTTGCTCATCGGTGATTTTTACCAATTGGTACTTGTCA---ATGAAGATGTTCTTCGTCTG--AAAAGCATAATTTTG-----TTGGTTTTGTGATTTGTAGTTTTGTAGTACGGCTTACATGAAGGAATCCATGGGAAATGTTTTGGGTGAGCAAGTAATCCAAAGCTTTGACTACCTGGCATGTGACAATTTTGATTTGCTCGTC------------ATAGTACATAGTATGGAAGG---------CGAtgtcatctgaaa
i cb4.chrX              I 492 C 0
s caeRem4.Crem_Contig15    85313 293 -  1794024 CAATTCTGGGGCGATGAATGGTAAGATGAAC-------AATGGAGTTCTT-GCATATGGTACCCAC------TTGAGGAGACGG---TTGCTCTCAATGTCAGAGACCTTTACCATATTATCTTTG------ATGAAGATGTTCTTGGTCTG--TAA---------TTG-----TGGGCGTTCAAGAAGAAATGTCAGAAGTTATTCTTACGTGGAGAGTTCCATGATAAACTCCCTGAGCATGCAAGTACTCAAGAGCTCTGGTCACTTGAACCAACACAACCTTGATACGGTCCTC------------ATTGTACTTTCCAGCGGTCA---------AGAGATCCGCTG-AA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    108551 294 +   484378 CAGCTCTGGGGCaacaaat-------ggaag-aattgCATTGGATGTATTATGGTATGGAGACCAG------TCAATGATAGCT---GAACTCTCGATGTCACCAATTTTAACC---TTGTCCTTGGTG---ATAAAAATGTTcttccactgaaaaa---------ttgggaatTTCTCATCAAAATAATAGACTCTGTA-------TTACATGAAGTGTTCCATGAAAAACATCTTGAGCGTGTAAATACGAAAGTCCCCTTGTGAGTTGAACCAGAACAGCCTTGATACGCTCTTC------------ACTGAGTTTTCCATACGCGT---------TGATGTCATCTGAAA
i caeSp111.Scaffold582  C 0 I 1508
s caePb3.Scfld02_0       3226566 316 -  4147112 GAGTTCTGGAGCCACAAAT-------GGAAGCAACTCCAAAGGAGTTGTT-TTATAAGAAGACCAT------TCCATAAAGACG---TTGTTTTCACAATCCGAAATTTTGACA---ATGGCATTGTCA---ACGAAGATATTCTTGTACtg--gaa---------tttgaatatttgtgtcaatttgatgaactttttgcT----CTTACGTGCAAGCATCCATGGGAGATATTGTGGCTGTGCAAGTAGTTGAGGGCACTAAGGACGTTCACTGTAATCAGCTTGATTACATCCTCAACCATACTCAAACCAGTTTCTCTGTGAAAGTTGGTGAACATGATGTTGtctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   231092 295 +   720316 AAGCTCCGGTGCCAAAAAG-------GGGAGCAACTCCAATGGTGTTTGG-TGGTAGGAAATGTGT------TGAAGGAGCTTT---GAAGTGACCAAATCAGAGACTTTAATA---ACGCCGTCGGAAAAGATGAGAATGTtctttgtctg--aaa---------attagaacataatttaaaatttggcaGGGTTATG-------TTACATGAACACTTCCATGAGTGATGCCTTGTGTATGGAGAAATTCGATGGCTCGGACAACTTGCCACGTCACCCATTTCGCTGTACACTC------------CCTATACCTTCCTTCTTCCA---------GAATGTCTTCTGAAC
i caeJap4.Scaffold18213 C 0 C 0

a score=1072.000000
s ce10.chrX              2503944 4 + 17718866 AGAT
s cb4.chrX              17246242 4 - 21540570 atgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    85606 4 -  1794024 ATGT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3226882 3 -  4147112 -agt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   231387 4 +   720316 ATAT
i caeJap4.Scaffold18213 C 0 I 1420
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=-7648.000000
s ce10.chrX              2503948 36 + 17718866 TAACATT--TAGAGAATGAAAAGATACAATAGTAGAAA--
s cb4.chrX              17246246 35 - 21540570 ttgattt--acagtaccg-gccaataagatatacagaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    85610 26 -  1794024 CTCCATT--TTAATTCT-------TAA---ATACTGAG--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3226885 37 -  4147112 tcattttcgtTAGGTTTG-AAGGatac--tattttgaaaa
i caePb3.Scfld02_0      C 0 I 1572
e caeJap4.Scaffold18213   231391 1420 +   720316 I
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=-2494.000000
s ce10.chrX              2503984 28 + 17718866 GTAATCCTACTATTCGTTCGATCAATTT-----------
s cb4.chrX              17246281 29 - 21540570 atcattttta----------gttaattttcggtcatttt
i cb4.chrX              C 0 I 7351
s caeRem4.Crem_Contig15    85636 26 -  1794024 CTAATTTTGATAT-------GAAAGTTCgaggt------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   231391 1420 +   720316 I
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=4663.000000
s ce10.chrX              2504012 405 + 17718866 TTTCGAAGTACACACGTTTTTCTGCAACTAATCAATGTTACTCACTAACTCTATTTTTGAAAAGTACATTATAGTGGTGGAGTAGCGAAAATGTTGAAACTTTTTGATACATGCCTTACCGTGTAAAGTCCAAGAATGGAACTCCATTACTTTATACACTATATCTTGAAAATGAGAAACCT---------------GAAAAAAAAAACAATAAGTACAAAAATTTCAAATATCAGTCACCGAGAAAGTCTGTACAATAGCCGGATGCTCGATAGAAATTATTTTCTGAAGAGTGGAGCCTTCATCGTGTGCAGTTAGCACGGCATCATGAAATGTTTCGTGATACTCTTTGATTGCAACCTT-GAATTCAATTTTGAAAT---AAC--------------GACACTAAAACAGCTGAAAGCGGTCAAACGTTGTAAC
s caeRem4.Crem_Contig15    85662 346 -  1794024 tttcaaaattttcagttattt-------taaCAAACGTGA------------ATTTTCCA------------------------------------------------------CTTACCATGCACCGTTGTTGGACACAACTCCATGACTCTGTAGACAATGTCGCGGAACTTATCAACCTATGAATATTTGATTCGAACAGAGAAACAA-AAGT--------------TATCA-TTACCGTGTAAGACTGCAAAAGACATGGATGCTTGATGTTTATGAGCTTGTGAAGATCAGTGCCTTCATTTTTAGCAGTGAGCATCAGGTCGTTAAATGTCGGGTGATACTCTTTGATTGCAACCTTCAAACTTAATTATATGGTGTGAACTGGGAATCTAATCAGAAAATAATGCAGCTGAAAGTG---AAACGTCACAAC
i caeRem4.Crem_Contig15 C 0 I 111
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   231391 1420 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=0.000000
s ce10.chrX              2504417 505 + 17718866 ACCTGCTCAATTTTTTGACCTTGGATTGCACTTTTAATAGCGTGTGCAAAAAATGTTAAAAATAATTATAAACCAAAGCTCTATAGGTATTTTGAACTAAAAGGAACTGAAGAATACATATAATTGTATAGAAACACTAGTGAAAAATGTGTATTTTTTAGCTGTCCATCAGGGGTTTAGCAGCAGAATATGCAATATTTTAAGAAATTTTGATGATAAATTCCGTAATTTCCTTACATTGTTTTATTATAAAAGTTAAAAAAGGTATGTACTGAtcacccatttgccggaaattttcatttttagcaaattgccgaattgtcgtttgccggctattaatttgccggaaatttttagaggaatttgttttaatttttttaatgtgcaaaaccacaattttcggcaaattcggcaaatcggcaatttggaaaattgctgatttgccggaaatttgcatttctacattttgccgatttgccgtttgccgaaaattttTTTTGTACAT
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   231391 1420 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I
e caeRem4.Crem_Contig15    86008 111 -  1794024 I

a score=4727.000000
s ce10.chrX              2504922 181 + 17718866 ACCTGTAACATTGAATCCGTAATAGTTCCTAAGAAGACTGTACCAAAACGACCTGATGCGATTTTGTCACTGATTCCCGTCCCATTCACGACGTTGGACAGGCACG------TTAGTTCCACTGGTCTTTCAATAACACTTTCAGATGCATGGTCAA------TGGACATACAGCATTTTTGGAGTTCCATGG
s caeRem4.Crem_Contig15    86119 193 -  1794024 ACCTGCAACGTAGTATCCATGATGGTACCAATGTACATTGTTCCAAAACGTCCGGATGCAATGCGATCACTGACGCCGGTGCCATTCATCACTCCAAACAAACACGTCACCTTCAGCTCCGCaggttttttgacaatttgcTTCGGCTCCTCGTTGAGCTCGTTTGACATGCAACGATTGAGAACACCCATTG
i caeRem4.Crem_Contig15 I 111 C 0
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   231391 1420 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=7540.000000
s ce10.chrX              2505103 50 + 17718866 GTATGTCTAATTCTTGGTTTGAGAGGAACATACATTCCATCTTCATCTGA
s caeRem4.Crem_Contig15    86312 50 -  1794024 GTTTGTCCAATTCCGGATTCGATAGGAATTTGCATTCCATCTTCATCTGA
i caeRem4.Crem_Contig15 C 0 I 2358
s caeJap4.Scaffold18213   232811 50 +   720316 GTTTTCCCAATGATCCGTCAGATGGAAATTTGTATTCCATCTTCATCTGA
i caeJap4.Scaffold18213 I 1420 C 0
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I

a score=182.000000
s ce10.chrX              2505153 2 + 17718866 AA
s caeJap4.Scaffold18213   232861 2 +   720316 AA
i caeJap4.Scaffold18213 C 0 I 6635
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=0.000000
s ce10.chrX              2505155 367 + 17718866 GTTTTAGTAAATATTACTTTAAGCTAGTTTACGCAAATATTGTTACGGAAATCAGAAATTATTTTCTCTCGTGCTCCAGTTTTAAACGAACTTGATTTTGAGTTTAAATAGCGAAATAGAGTGGTTTTGAACGATGAAAATAATGACTATTCAACGAATCTATCCTATTAGCACCAATTTGTCGTATTTCTAATATGTAAAACGATGGATTACAAATGCAAGCTTTTCAGCTTCAGTAGAAAAGATTACGAAAAGCTGTTGCAAAGTTGAACTTAGGGCATAGAAGTATCAAAACACAAATGTAAGTTTTTCAGTTTCAGTTCATGATTAATACTCTAATTTCGACAAAATGAGACGTTTTTGAATT
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    108845 1508 +   484378 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=177.000000
s ce10.chrX              2505522 4 + 17718866 CTGT
s caeSp111.Scaffold582    110353 4 +   484378 CTGG
i caeSp111.Scaffold582  I 1508 C 0
e caePb3.Scfld02_0       3226922 1572 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=7652.000000
s ce10.chrX              2505526 116 + 17718866 GCTCAACATCGCTTCAAGAAACAGATTAGAAGCAGATTAG---AAATTGTATCGTCTTACTGTAGCTGACGCAGAACTAGTAAAGTTAC------TTAAGACCTTGGATATAATATTGAGATAAA--
s caeSp111.Scaffold582    110357 103 +   484378 GCTGAAAATGGTTTGAAAG-AAAGATT--AAGCAGATTAGTAGACATTATACATTCTTACTGTAACTGACGCATAACTCTCGAATCTAT-------------------TTTAATAACGAAATAGA--
i caeSp111.Scaffold582  C 0 I 4208
s caePb3.Scfld02_0       3228494 124 -  4147112 GCTAGAAGTAGTTCGAAAGAAAAGATT--AAGAAGATTAGTGTACATCGGACTGTCTTACTGTAACTGACGCACAAAGCCGGAAGTTATTTCTGGCTAAAATGCAAGATTTAAT-CTGAAAgaggaa
i caePb3.Scfld02_0      I 1572 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=514.000000
s ce10.chrX              2505642 162 + 17718866 ATGTGCACTTTTCGCT-----TCGC------AAAATTCTAAAG-----TGCGGGGACATTGTT----------CAGGAAATATTTGAGAA-CACAACGAATATCTATAGTGACGGCGCGCTTCT-----TCACCATTTTCCACTTTAAAATCTCCGCCTACATTTTGTGTGAAGCACGGT-GAAAAAGCACACAT
s caePb3.Scfld02_0       3228618 185 -  4147112 atagaaaattgttCCTGAGACTTGCTCGAAGACAATTATGACGATGTCTGAGGCTACGGTACTTCTGCTCTCAcatgaaa----tgagaagaatgaaggatATGGGGTGTGA---CCCGTTTCTTTCGATCATCATTTTCC---TTTCAATCTCCGCCCACAGTGTGCGTAGGCCGTAGTAGAGAGAGCACATGT
i caePb3.Scfld02_0      C 0 I 1835
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=0.000000
s ce10.chrX              2505804 495 + 17718866 CAACATTCAATGCTCCAACCCGCGAAAAAACACAAGGAAGTTGAACGGAAATAAAAAAGAAAATGTAAAAAATGCAATCCAATATAAATTTTAAAAATTGGTCATAACTAGGGTTTACCTCATTTAACTTGAAACaaaaaaaaataaaaaataaaaaatttttttGCAAAGTTTAATTTTATATCTGGTCATTTCAGCTCTTTAGGAATTCAGCCATACTTTTACTTTGCGCAGTTTTCACAAATTACTAGAAAAGTTAGTTTGACGACATAAACTTTTGAGTGTGCTACCCAGCAATTATTCCAGCTACAAGAAGAGAAATATTGATCGTATTCAAAATTTCTACTTACTGTGCTAAAGTAAAAATAGGAAAATAGGaatatttttttaatacttttaaatattcatttaaaatGGTGGGGATATAATACACAAGTACCAAACAAATTTCAGCAAACCGCACTATTTTAAAGAATAAAGCAATGAAAACAAGAG
e caePb3.Scfld02_0       3228803 1835 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=716.000000
s ce10.chrX              2506299 19 + 17718866 AAAATAAAATTGAACTCAA
s caePb3.Scfld02_0       3230638 19 -  4147112 aaaatgaggttgaCGCCAG
i caePb3.Scfld02_0      I 1835 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I
e caeRem4.Crem_Contig15    86362 2358 -  1794024 I

a score=4457.000000
s ce10.chrX              2506318  90 + 17718866 AAGCATATGTGCGAATGACGA--------------TGGGATCAA-----GTCAGAAAGTGCATACTCGGCGGGGTTGATGAAGAAAGAAGGCTGTTTTATTGAAATGAG
s caeRem4.Crem_Contig15    88720 109 -  1794024 AGGCACATGTGTGAAATATAGAATCCGAAAAAGTTTGGTGATGGCCCCATGAAAAAAGTGCATTCTGTGAGCCGATGATAAGCGGGAAGAGTTTTTCGATTAAGACGGG
i caeRem4.Crem_Contig15 I 2358 C 0
s caePb3.Scfld02_0       3230657 102 -  4147112 --GCACatatgtgaaaaatgagaggaggCGAATATTGGGAGCAGT----GGGTAAAAGTGCACACGCTGAGGCGTTGATAAGCGAGGA-CTTTTTTCGATTAAGAAGAG
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I

a score=-793.000000
s ce10.chrX              2506408 24 + 17718866 TA-----AAACATAGTTCTTTCACTTTTT
s caeRem4.Crem_Contig15    88829 29 -  1794024 TGCTCAGAAATGTCGATCGGTCAGAGGAG
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3230759 38 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I

a score=4222.000000
s ce10.chrX              2506432 296 + 17718866 -------TGTGTGTCTTGGCTAACGA----CGGCTGCTGGCCAAATAAGAGGGATGATGCGGATGCACTTTTAAGAGAGCACTAACAT-TTTTCTCTTCT-----TTC-AAGAATGT--AGCTTATCTTGCAC----TGATGTTTGGAATAGATT------------CTGACTCATGTGTCCTATAATTATTTTG---ATTCTGC-TTTTTCAAGGTACATTTGAATACAAATTATATAGTTAGAGCAGAAACATTTTCAAGCACAAAATTTTAAAACGTGAGCGCAAGTGAGTAATCAAGTAATCTAACATTCGGGTCAATGACTGCTTCGATAA---
s caeRem4.Crem_Contig15    88858 284 -  1794024 CACGCGCCTTGCTTCTTG----CAGGCGCTCGGCGGCTTGT--------AAGAAACAGCTAAATGCACTTTTAAGGGGACACTCTCCG-TTTTGTCTTCTCAAACCAC-AAATACTTGCGGCTTATCTCGACCAAAACGATGTTTGGCACCGGATGAATAAATTCTCCTGACTCATTGATCTCAAATCTTCTTTAtaaacttctcatttttctagtt------------tgaaaatgtattcGGAATCGGACGAC------------AAATTTAGAA----AGTGCA----GGTATGTGAGTAATATGACA--TGGGTCAA-------CCCAAAGATAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3230797 271 -  4147112 -------TCTGCTTCTTGGCAAAAGGGACGCGGC-GCTCGT--------AAGAAAGAGCCGAATGCACTTCTAAGGGGGCactctcctcctcttttctttgGAGCCACGAAATACTT--GGCTTATCTGTGCCAAGAAGATGTTTGACTCTGCTC---TCCAGTTTTCTGACTCATTAATCTGAATGCTATTACATACATCTTTC-TTTGTGAAAT---------------AGAATGTATTTGGAACAGAGCTAC------------AATTTGTTAA----AGGGCATG-GAGTATGTGAGTAATCAAACA-TTGGGtcaa-------cttga------
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17246310 7351 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I

a score=25475.000000
s ce10.chrX              2506728  97 + 17718866 AAATGAAGATGAT----GAGAGACATTG--AAAGTGCAAC--GGAAATTGTGACGGGTCAAGGGGGGAGTAG-----------------------AAAAAAAGAAAGAATGACAGATG-GGAGCATGTC
s cb4.chrX              17253661 129 - 21540570 AAATCAAATTGATGATAGGGACGAAatgaaaaagtgcaaaacGGAAATTGTGACGGGTCAAGAGTAGAGGAGAAGAGCATGAAGGATAGGggttggaaaaaagaaagaatgaCAGATGAGAATCATGtc
i cb4.chrX              I 7351 I 2091
s caeRem4.Crem_Contig15    89142  90 -  1794024 ------AAATGATGGTCgagagaaattg--aaagtgCAGA--GGAAATTGTGACGGGtcgaaaagagaagag----------------------------agggaAGAATGACAGATG-GAATCATGTC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3231068  92 -  4147112 aaaagaaaatgat----gggaGAAAGTG--AAAGTGCAAT--GGAAATTGTGACGGGTtgaggagaggaaaa----------------------------aagtaagaatgaCAGATG-GAATCATGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e caeSp111.Scaffold582    110460 4208 +   484378 I

a score=1243.000000
s ce10.chrX              2506825 19 + 17718866 TTTATGCGTTT-CCAACTCA
s caeRem4.Crem_Contig15    89232 20 -  1794024 TTGATGATTTTTCCAACTCA
i caeRem4.Crem_Contig15 C 0 I 2110
s caePb3.Scfld02_0       3231160 19 -  4147112 TCGATGCTTTTCTCTactc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17253790 2091 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I

a score=627.000000
s ce10.chrX              2506844 16 + 17718866 CAAGAGGATTTTCGAA
s caePb3.Scfld02_0       3231179  9 -  4147112 -------attttcgaa
i caePb3.Scfld02_0      C 0 I 2507
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17253790 2091 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I
e caeRem4.Crem_Contig15    89252 2110 -  1794024 I

a score=0.000000
s ce10.chrX              2506860 1307 + 17718866  
e caePb3.Scfld02_0       3231188 2507 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17253790 2091 - 21540570 I
e caeSp111.Scaffold582    110460 4208 +   484378 I
e caeRem4.Crem_Contig15    89252 2110 -  1794024 I

a score=102.000000
s ce10.chrX              2508167 68 + 17718866 CTGGTAAAAGAAAAAAGTTTCAAAAAACCATAAATATCAACAATTGTGGAAAAGAAGCATGGACATCT-------
s caeSp111.Scaffold582    114668 70 +   484378 CTGATATCAGATAAAACC-----AGAGTCGAAAATATCAGAGTTAGAAGAGGTGAAGGTTTCGCATTTGGGAATG
i caeSp111.Scaffold582  I 4208 C 0
e caePb3.Scfld02_0       3231188 2507 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17253790 2091 - 21540570 I
e caeRem4.Crem_Contig15    89252 2110 -  1794024 I

a score=546.000000
s ce10.chrX              2508235 1 + 17718866 A
s caeRem4.Crem_Contig15    91362 1 -  1794024 A
i caeRem4.Crem_Contig15 I 2110 C 0
s caeSp111.Scaffold582    114738 1 +   484378 A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3233695 1 -  4147112 a
i caePb3.Scfld02_0      I 2507 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17253790 2091 - 21540570 I

a score=48513.000000
s ce10.chrX              2508236 268 + 17718866 GACGCAG-AAAAC--CTCTTC--TCCAATTATAG-GGGTC--AGCC-----GAGGAGCTTGGGCGCC-GCCGCCGCTCAACTGACGCACCGGATTAGGCAAAT----CGAGGGGATGATGTTCTTTGGCACTGGATAAAAGTGTTTGAATCTGAGTGAGGACAATGAGTAGCTATTTA---TGAGAGAGCAAAAGGCTTCTCGAATGAGGAAGTCATTTCATGCTTCATTTTCCAAATTTGGAAAGAGGAATGATCAGA---TGTTTTAATCAATGTCACCTTGGAAACCA--A--------
s cb4.chrX              17255881 254 - 21540570 GAGGCCG-GAGGC--ACCTAT--ACCAATTATAGAGCAGCGGACCCGCGCGCAGGAGCCATGGCGCTAACCGCG-------TGACGTACCGGATTAGGCAAATGAGCGAAGGGGATAATGTTCTATGGGATTGGATGGAagttt-----tttgag-aacaaaGAGTAGTAGTGCTTT----CTGAGAA-----TGGCTTCTAATACGATGAAGTCAGTGATTGTGT--TGTTCCAAAATTAGACTA-------AATGGGACACACT---ATCAAAA-CAATATGCTTTTGGTCA--------
i cb4.chrX              I 2091 C 0
s caeRem4.Crem_Contig15    91363 266 -  1794024 GAGACAGCGAGGC--GCCTGC---CCAATAATTG-GAGGCGGAACCTC---CAAGAGCCAAGGCGC--AGCGCGGCGCAACTGACGTACCGGATTAGGCAAAT----AGAGGGGATGATGTTCTATGACACTGGACCGAAGTTTAG-AAGCCGAG-GACAAAGAATAGTAATAGCTCAAAGCTGAAAAGCAATTGGCTTCTCACATGAGGAAGTAATGCATCGCGC--TGTTCCAAAATTAGACTACCGAGGGAGTTGG---CATT---ATCAATA-TAACACGTGACTCG--A--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    114739 258 +   484378 GACGCAG-AATG---GCCAACCCTTCAATTACTG-G-GGCGGAGTCAG---CAAGAGCCGTGGCGCTGAGCGGGGCACGACTGACGTACCGGATTAGGCAAAT----AGAAGAGATGATGTTCTGAGGGATTGGATGAAAGTTTTA-AACGcgaa-aagaacaaagagTAGT-----AATTCTTGAAAT--ACTGGCTTCTCACATGAGGAAGTCACACACCCCGC--TGTTCCAAATTTAGACTG-------ATCAAC---GAGT---ATT-----CAGCGTGTGACTCT--AGAAGCCAT
i caeSp111.Scaffold582  C 0 I 59
s caePb3.Scfld02_0       3233696 256 -  4147112 gacgcag-aaagtgAGCCAAC----CAATTACGG-GAGGCGGAACC-----TAGGGGCCGTGGCGCTGAGCGCAGCTCAACTGACGTACCGGATTAGGCAAAT----AGAGGGGATGATGTTCTAAGGAATGGGATGGAAGTttaagaaaacgag-aagaa-aaatagtAATCGCACAAAGCTTGAAAGCAAATGGCTTCTCACATGAGGAAGTCATGCCTTTGGC--TGTTCTAGATTTAGACTG-------ATCAAA---CAAT---GTT-----CATAATCTGCATAG--AG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I

a score=-1550.000000
s ce10.chrX              2508504 16 + 17718866 TTGGAGATGAAGGAGG
s cb4.chrX              17256135  6 - 21540570 --GAAGCT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    91629  8 -  1794024 --GAAGCTTG------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3233952 15 -  4147112 -TGTAGCTCGAGGAGG
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e caeSp111.Scaffold582    114997 59 +   484378 I

a score=-4744.000000
s ce10.chrX              2508520 74 + 17718866 AGTGCACGGCCGCCGTTG---------------------ATAGCTTGCTTCTAGTTTGATACTCTTCTCCCTAAGATTTCACTCAGCGTGCGTGA
s cb4.chrX              17256141 34 - 21540570 ---------------------------------------GTAATTTGCA---AATAacttacgttttt--------ttt---------tgaat--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    91637 83 -  1794024 ATTGC-CAGACTCCACTCTATTTCAAGATTCAACTCAAGATAATTAGAATTGAGTGATATACTTTGTT--------TTTGACTCC---TGAATGT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3233967 76 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e caeSp111.Scaffold582    114997 59 +   484378 I

a score=-3425.000000
s ce10.chrX              2508594 10 + 17718866 AGTAGTCAGC---
s cb4.chrX              17256175  4 - 21540570 ---------tgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    91720 10 -  1794024 ---GCAAAACGGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115056 10 +   484378 ACTAGAGAAT---
i caeSp111.Scaffold582  I 59 C 0
e caePb3.Scfld02_0       3233967 76 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I

a score=47739.000000
s ce10.chrX              2508604 174 + 17718866 AGGGGCAGAAAAAGTGGGGCAGTGATCATTTG----AAATATTGGGAAGCCGCAAGAAAAAGAAAGCTCAGCAGGGGAAAAAAGTTAATTGATAGGAGGAGTGTGG-ACTCGGAACCACAAGGGT-AAAAACTACCCACTATTTATCAACATCAGAATTTGACGT-TAACGAGTTGACAGG
s cb4.chrX              17256179 150 - 21540570 -aagaaTCTCGTAGGACACCAGTGCTCA--------GAAGAA----AAACCGCAAGCGAATGAA------AAAGTGGAGAG----TAAGTGATAGAAG----CTGA---TGGGGACCACAAGATTGAAAAAGTACCCGCTATAAATCACGATCAAGAATTGACGC-TAATGAGTTGACAAG
i cb4.chrX              C 0 I 560
s caeRem4.Crem_Contig15    91730 167 -  1794024 -AAGGATGAAG-AGGGGACCACTGATCATCAGACAGGAAAAATGGGAAGCCGCAAGAAAAGAAA------GCAGTGGAGAAAAGCTAATTGGTAGAAA----CTGAAGCTGGGAACCACAAAGAT-AAGAACTACCGACTATTAATCAACATCAGGGGTTGAGAC-TAACGACTTGACagg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115066 151 +   484378 ------TGGAGCAGCGGTTCTGTGatcatcgaaaa-agaaaattgaaagccgcaagaaaagaaa--------------aagaagctaaTTGATAGGA-----GTGC---TCGGAACCACAAGGGC-TAAAACTACCCACTATTAATCACCATCACAAGTTGACGCAAAACGACTTGGCAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3234043 167 -  4147112 aaaaaaagagaaagtgggTCGGTGATCgtttgaag-gaaaaatgggaagcCGCAGGAAAACGGA-----AGCAAAGGGAAGCAGCTAATTGATAGGAG---TGTGC---TCAGAACCACAAGGCT-AAGAAATACCCACTATTAATCACCGTCACAAGTTGACGT-AAACGACTTGACAAC
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I

a score=1534.000000
s ce10.chrX              2508778 17 + 17718866 TTTGATACGATTAGTTG---
s caeRem4.Crem_Contig15    91897 20 -  1794024 ttcaaaaaaattgaaagctg
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    115217 17 +   484378 TTTGATAGCATCAATTG---
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3234210 17 -  4147112 CTTGATACCATCAAATG---
i caePb3.Scfld02_0      C 0 I 872
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17256329 560 - 21540570 I

a score=-472.000000
s ce10.chrX              2508795 29 + 17718866 ---GAAGCAGGA-CGCCTATTTCTAAAAACGTG---
s caeRem4.Crem_Contig15    91919 30 -  1794024 ---GAGGCACGTATCCTTTCCTTTCAAAAGATC---
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    115236 30 +   484378 ACAGAGGCAcgt---cttttctctcaa---atccTG
i caeSp111.Scaffold582  I 2 I 244
e caePb3.Scfld02_0       3234227 872 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17256329 560 - 21540570 I

a score=-3448.000000
s ce10.chrX              2508824 379 + 17718866 CCATGGTAAAAAAAAACTGAGGACCCAATCCGGCCGACGCAAAAAATTCGGTTGATCTCCACTAC-AGGCCGGACAGGG--CCGTTTTCATTTTG-----------AATGAGTAAAACTTTTGTTTTGAATGTCGCTTGAAGCTCAATTTTTTTGGAATGGTTATTTTGATTTCAAACAAA---CTGAATT-TATTCCAAGTTTTAAAAAAACTCAAACCTTTTAGTTTTGGCCAGTTTTTGTACATTTAAGCAATGTACCCACAAACTCTACTCCCCTTTTAAAATTGTAAACTCACTCCAATTTGTGTGAAAAAAAGGCCTGAACTTGAAATTCGAAGGCAGTTTACTTTGTGCCGAAATTGAAATAGTGTTCAACTATGATATACTCCAATGGG
s caeRem4.Crem_Contig15    91949 292 -  1794024 CTGCGGTGC-------CTGCCTATCCTATCAAGATGAT--AAAGTGGTCGCTTCATTTTGAATGTTGGGGAGGAGAGTGACCCAGTTTTATTCTGCCACGTGCATTGATAATGGAAA----GGTGTTGAA---cacagaaaataaaactttacCGTACAGCATAACTTAGTTT---ACAAATCTCTGCATTGTATGACGACTTCCAGAGTGACTGAGTTcatgcaactttt-----ttttcggagtttCAA------------------CTGCGACACTT--------------------------------aaaaaaaaCC---ACCTGCAATAAGAAGG-----TGCGTTGT---------------------AAgtataaaatgttttattg--
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3234227 872 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17256329 560 - 21540570 I
e caeSp111.Scaffold582    115266 244 +   484378 I

a score=-6716.000000
s ce10.chrX              2509203 137 + 17718866 ATGTATAATTTGAAAACTTGCAAATCATGCAAGAAATGAACAAGTTCTTCATCTGGCTCAATGCATCTGCAT--CAAAATTTT--AATGAATGTAATCTCACGTATGTATGGAAAATTGTTTATGCAAATTCGGATGACTA--------------
s caeRem4.Crem_Contig15    92241  72 -  1794024 ---------------------------cAGATGACTAGAATACATT----------------------------Cagaacagttgaaaaa-----------------aatgaaaa-------atacaaactC----CAGCAGGGAACATTgagga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115510  91 +   484378 ATATCTATCTTTAA------------ACACAAATCAAGAATGCACTTT--------CTCAAACCACCTGCTCGGCAAAACACT--AAAGA-----------------TGtggaaa-------atgttcattt----gACTA--------------
i caeSp111.Scaffold582  I 244 C 0
e caePb3.Scfld02_0       3234227 872 -  4147112 I
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17256329 560 - 21540570 I

a score=-1912.000000
s ce10.chrX              2509340 29 + 17718866 GAAAACATTCAAAC--------------------------AAACGAGAGAGAGAG
s caeRem4.Crem_Contig15    92313 17 -  1794024 gaaaaaattgaata--------------------------caa------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115601 55 +   484378 GAATACATTCAAAACGGTTAGAGACTCTTGTTCCAGCACGAAACAAGgggaagaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3235099 26 -  4147112 gaacattttcaaaa--------------------------aaaaaatacaaa---
i caePb3.Scfld02_0      I 872 C 0
e caeJap4.Scaffold18213   232863 6635 +   720316 I
e cb4.chrX              17256329 560 - 21540570 I

a score=12154.000000
s ce10.chrX              2509369 50 + 17718866 AGAAAAAAAT-----------------ACAAGTGAAAATAATTTAT-----AGGTCATTGAAATATCAA----TGT
s caeRem4.Crem_Contig15    92330 65 -  1794024 --aAGAAGATAGAATATGAAATG----ACAAGTGAAAATAAGTTAT-----AGGCGGATGATAGGGAAACCAAtgt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115656 67 +   484378 tgaaagagataGATTATGAATCA----ACaagtgaaaataatttatagGG-GGGTGGTCGATAGGAAAA----TGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3235125 62 -  4147112 --aaagaaataaaatatgaaagaggagaaaagtgaaaataactTAT-----GGGTGGATGATAGGAAAA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   239498 49 +   720316 aaaaaaagatcG---------------ACAAGTGAAAATAAGTTATGGGACAGACGGATGATGA------------
i caeJap4.Scaffold18213 I 6635 C 0
e cb4.chrX              17256329 560 - 21540570 I

a score=9351.000000
s ce10.chrX              2509419 162 + 17718866 GGGATGGAGGGG-------------------GGTCAATTAGGCTTCTCGTGA---------------------GTGGAAAAGGGATGGGATGGTGAGAAA-AATG----AGAATGGCAAGTAAAACCCGTTTTGAA--TAAGATAAAAATGAGAATGA----ACATGTCAAAAACTGCTGA--AGAACGCCAC-CTTATGACACA-AAACATCATTT
s cb4.chrX              17256889 183 - 21540570 gggggggggggg-------------------ggtcaatGA-GAAGGGG------AGGAGGAGAGGCCGCCG--AAGGAAAAACGATTGGTGGGTCaaaaa-aaGGATGAAGAATGGCAAGAGAGACCCGTTTAGAGTTTTAGATAATAAATGA-GGAGGGCtacagagaaaaaaacgaggagTAGAACGGAAG-TTCATGACAC---AGCATCATTT
i cb4.chrX              I 560 I 39
s caeRem4.Crem_Contig15    92395 178 -  1794024 tggggggggggg-------------------ggtcatTCA-GTGGTTGatgtcaagaaaaaaaaattgatgtcaagaaaaatctgagGGTGGgtcggaaa-aatg----agaatggcAAGCGAAACCCGTTTCTAA--TAAGATAAAAATCAA-GGGA----Acatatcaaaaactga-----agaacGCTCT-TGTATGACACA-AAATATCATTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    115723 151 +   484378 --CTCGGGGAAG-------------------GGGCATTTATGTGGtacat-----------------------gaaaaagagaga-ggctGGGACggaaagaatg----agaatggC-AGCGAAACCCGTTTCtaa---aagttaaaaatcaagaaga----acaCGA-GAAAACTGT-----AGAACGCCCA--GAATGACACA-ATGTATAATTT
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3235187 155 -  4147112 --CCAACGGTTG-------------------GGTCACTTAAGTAGTTGATAC--AGGCCGAG-----------AAAAAGGTGAGATGGGTGGGccggaaaaaatg----agaatggcAAGCAAAACCCGTTTAGAA---AAGATAAAATTCAA-AGGA----ACATGA---------------AGAACGCCCATTATATGACACA-ATATATAATTC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   239547 162 +   720316 ---GAAAAGAGGACACAGAATGAGTTTCGACGGTCATTAAGATACTTAATGACAATCAAGGT-----------GTAGAAAAA--------GGGGTCTAAA-GATG----AGAATGGCAATTGCAACCCGTTTTTTG--GAAGACAGTAATCAA---GA----ATAATG---------------AGAA--ACAA-TACATGATGTATAAAGAACGTT-
i caeJap4.Scaffold18213 C 0 C 0

a score=3720.000000
s ce10.chrX              2509581 45 + 17718866 AGGTGATTGATGACCT------CAAAACGTTGGCGGCGGTCTTTTTTTTTT
s caeRem4.Crem_Contig15    92573 51 -  1794024 ATGTGATTGATCACCACCGATACAAAACGGAGGCGTCGGCCGCTTttaatt
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    115877 49 +   484378 GGTTGATTGATCACCTTTGATACAGAATGATGA--AAGGTTTCGTGTCGGT
i caeSp111.Scaffold582  I 3 I 20
s caePb3.Scfld02_0       3235344 51 -  4147112 GGTTGATGGATCACCTCCGACATAAAACGAAGACGgcggtttcttttttgt
i caePb3.Scfld02_0      I 2 I 19
s caeJap4.Scaffold18213   239709 25 +   720316 ---TGGTTAATCATAATCA---CCAAATGTC--------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17257072 39 - 21540570 I

a score=498502.000000
s ce10.chrX              2509626 934 + 17718866  
s cb4.chrX              17257111 890 - 21540570  
i cb4.chrX              I 39 I 61
s caeRem4.Crem_Contig15    92627 833 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    115946 835 +   484378  
i caeSp111.Scaffold582  I 20 C 0
s caePb3.Scfld02_0       3235414 828 -  4147112  
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18213   239734 787 +   720316  
i caeJap4.Scaffold18213 C 0 I 31

a score=-3358.000000
s ce10.chrX              2510560 6 + 17718866 GTCGGA-----
s caeRem4.Crem_Contig15    93460 6 -  1794024 -----attgaa
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    116781 6 +   484378 --ATGGTG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3236242 6 -  4147112 --ATGATT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   240521 31 +   720316 I
e cb4.chrX              17258001 61 - 21540570 I

a score=-873.000000
s ce10.chrX              2510566  8 + 17718866 AATTGTTA--
s caeSp111.Scaffold582    116787  8 +   484378 AGATGTGG--
i caeSp111.Scaffold582  C 0 I 20
s caePb3.Scfld02_0       3236248 10 -  4147112 AAATGGATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   240521 31 +   720316 I
e cb4.chrX              17258001 61 - 21540570 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=469.000000
s ce10.chrX              2510574 11 + 17718866 TAAATTTTGTT
s caePb3.Scfld02_0       3236258 11 -  4147112 AAGATGTTGTT
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18213   240521 31 +   720316 I
e cb4.chrX              17258001 61 - 21540570 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=0.000000
s ce10.chrX              2510585 5 + 17718866 TCCCT
e caePb3.Scfld02_0       3236269 5 -  4147112 I
e caeJap4.Scaffold18213   240521 31 +   720316 I
e cb4.chrX              17258001 61 - 21540570 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=-148.000000
s ce10.chrX              2510590 193 + 17718866 TTATTTCTTCGTAAAATCTTAATTTAATCGATACGT--GAATTTGatttgaattttttggcttagaaaaacact----aaaccttagcctaatatggacaaaaagggtcaca-tgaaaatttca-----aaatggttaacatttttgggCCAGGAACTACAGGT----AGATACTTTACTACCgcttccatgcaggcaccaaaacgcct
s cb4.chrX              17258062 178 - 21540570 ctatttttcggttgatttttggtattttcagtAGTTTGGAGCTTGGCTGTTAAGTTttggat--------cactttgaaaactttgg---agtgtgaaaaaaaaaacctagattgagaactttgcattcaaatattt----tttttg----aaaattttcagcttttcagaAACT----TGCCGATTCCTGA--------AAAACACCT
i cb4.chrX              I 61 I 94
e caePb3.Scfld02_0       3236269   5 -  4147112 I
e caeJap4.Scaffold18213   240521  31 +   720316 I
e caeSp111.Scaffold582    116795  20 +   484378 I
e caeRem4.Crem_Contig15    93466  31 -  1794024 I

a score=0.000000
s ce10.chrX              2510783 119 + 17718866 gcacgccttgcggcgacctctgcctgccttgcgccaagagctacgtctcttgtatagtgcgacgcgggacccgaaaagtgtcagtcacggcgaaagaaacacccattgcattatgtggt
e caePb3.Scfld02_0       3236269   5 -  4147112 I
e caeJap4.Scaffold18213   240521  31 +   720316 I
e cb4.chrX              17258240  94 - 21540570 I
e caeSp111.Scaffold582    116795  20 +   484378 I
e caeRem4.Crem_Contig15    93466  31 -  1794024 I

a score=420.000000
s ce10.chrX              2510902 63 + 17718866 gggaacaccaagtctttga----------------cttctca----ccatagttctgaaaggaggcgtgaggccggacggttg
s cb4.chrX              17258334 82 - 21540570 gcgaattcaaagtttttgatctaAATGTAAGTCGGTTTCCCAGCTTCCAACATtatcaaagtgatcg-gaaacttgacagctg
i cb4.chrX              I 94 I 79
e caePb3.Scfld02_0       3236269  5 -  4147112 I
e caeJap4.Scaffold18213   240521 31 +   720316 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=0.000000
s ce10.chrX              2510965 74 + 17718866 gaggcaggtgccaggccctgaaaccgcgcctgcatcacatggaagccctaTACTCCGCAAGTTTCCAGAAAAGT
e caePb3.Scfld02_0       3236269  5 -  4147112 I
e caeJap4.Scaffold18213   240521 31 +   720316 I
e cb4.chrX              17258416 79 - 21540570 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=91.000000
s ce10.chrX              2511039 1 + 17718866 T
s cb4.chrX              17258495 1 - 21540570 T
i cb4.chrX              I 79 C 0
e caePb3.Scfld02_0       3236269 5 -  4147112 I
e caeJap4.Scaffold18213   240521 31 +   720316 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=273.000000
s ce10.chrX              2511040 1 + 17718866 A
s cb4.chrX              17258496 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3236274 1 -  4147112 A
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18213   240521 31 +   720316 I
e caeSp111.Scaffold582    116795 20 +   484378 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=630.000000
s ce10.chrX              2511041 3 + 17718866 AAA
s cb4.chrX              17258497 3 - 21540570 GTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    116815 3 +   484378 AAA
i caeSp111.Scaffold582  I 20 C 0
s caePb3.Scfld02_0       3236275 3 -  4147112 AAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   240521 31 +   720316 I
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=26.000000
s ce10.chrX              2511044 3 + 17718866 CTA
s cb4.chrX              17258500 3 - 21540570 CAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    116818 3 +   484378 CAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3236278 3 -  4147112 CAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   240552 3 +   720316 ctt
i caeJap4.Scaffold18213 I 31 C 0
e caeRem4.Crem_Contig15    93466 31 -  1794024 I

a score=161342.000000
s ce10.chrX              2511047 168 + 17718866 ACCAATCCAATCTAGAATATTTCTCTTCTTGAGCAGTGTGCCTCTGTTGTCAAATCCTAACCCGTTATTTGCAGAGCAATTATAAACACCAAAGTCTTCTTCTTTCAAATCTTTGATTTTAAGAATACTTTCTTTTCCATATGGCTTGGGATATTGGTGAACCTGAAA
s cb4.chrX              17258503 168 - 21540570 ACCAATCCAATCAAAcaagtttcgttttttgagCAGCGCTCCTCGATTGTCGAATCCCAGTCCGTTATTTGCAGAACAGTTGTACACACCAAAATCTTCTTCTTTAAgatctttgatttttagaatactTTCCTTGCCATATGGTTTCGGGTACTGGTGAACCTgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    93497 168 -  1794024 ACCAATCCAATCGAAAAGATTCCGCTTTTTGAGCAATGTTCCGCGATTGTCAAATCCTAATCCGTTGTTTGCAGAACAGTTGTACACtccgaaatcttcttcttttaaatCCTTGATCTTCAGAATACTTTCTTTCCCATAAGGCTTCGGGTACTGATGCACCTGGAA
i caeRem4.Crem_Contig15 I 31 C 0
s caeSp111.Scaffold582    116821 168 +   484378 ACCAATCCAGTCAAGGAGATTTCGTTGTTTAAGCAGTGTTCCTCGGTTATCAAAACCTAAGCCGTTGTTGGCTGAGCAGTTGTAAACCccaaaatcttcttcttttaaatccttgatttttagaatgcTTTCTTTTCCATACGGTTTTGGATACTGGTGGACCTGAAA
i caeSp111.Scaffold582  C 0 I 263
s caePb3.Scfld02_0       3236281 168 -  4147112 ACCGATCCAGTCAAGaagatttcgttttttgagtaaaGTCCCCCGATTATCAAACCCTAAGCCGTTATTTGCAGAACAGTTGTAAGTTCCaaagtcttcttctttcaaatctttgatttttagaataCTCTCTTTTCCATATGGTTTTGGATATTGGTGGACCTGGAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   240555 165 +   720316 aCCAAGCCAATCCAAAAAGTTCCGTTTTTTGACTAGTGTTCCTTTACTGTCAAATCCCAAGCCATTATTCGCAGAACAGTTGTAAACACCAAAATCCTCTTCTTTCATATCTTTAATCTTTAGAATACTTTCTTTACCGTATGGTTTGGGATACTGATGAACCTA---
i caeJap4.Scaffold18213 C 0 C 0

a score=-12549.000000
s ce10.chrX              2511215 34 + 17718866 AATCT-AGTTTTTTTCAGAATTTCT------------------CTTCAAATTC-----
s cb4.chrX              17258671 34 - 21540570 aagac-att--ttttggtgattcattt----------------ttcgaagCTC-----
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15    93665 51 -  1794024 AGGA--ATTAGTGTTCGGAATCCGTTTACAATGACAAATGGGATTTCCAGTTC-----
i caeRem4.Crem_Contig15 C 0 I 38
s caePb3.Scfld02_0       3236450 44 -  4147112 AAGATGATTAATGTTTACA------TGAAAAAGACAAATG---TTGACAAATG-----
i caePb3.Scfld02_0      I 1 I 19
s caeJap4.Scaffold18213   240720 41 +   720316 AATCT-CTTAATTGCAAAACTTTACTT----------------TTTGAACGGGGAAAT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    116989 263 +   484378 I

a score=298458.000000
s ce10.chrX              2511249 565 + 17718866  
s cb4.chrX              17258734 611 - 21540570  
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig15    93754 646 -  1794024  
i caeRem4.Crem_Contig15 I 38 C 0
s caeSp111.Scaffold582    117252 660 +   484378  
i caeSp111.Scaffold582  I 263 C 0
s caePb3.Scfld02_0       3236513 612 -  4147112  
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18213   240761 543 +   720316  
i caeJap4.Scaffold18213 C 0 I 890

a score=-14803.000000
s ce10.chrX              2511814  60 + 17718866 TTGAAAA-AAAAACTGGGTGTCTTCTT----CTTATGTC-------------------------TTCTTTTCCAA-----TGAA-AAGA----------------------------------------GATGAAC
s cb4.chrX              17259345 125 - 21540570 CCAAG---ATTCATCGGTTGAGCTACT----TTTGTGC----TCTTGTGACGAAAGAACTTTTCTGCTCTGCTGAcgcatcaaaaaaaaagttttaaagcatttctgtttcaaaaaagaccATCTAAAAAGAAGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    94400 101 -  1794024 TTGGA---ACATATCGCTTGAACTGCT----CTGACGCAAAACTACGAATCAGCAGGATCTgctagtttttttga--aatcaaataaaa-------------------tttaaaaa-------tcaaggGGAAAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    117912  88 +   484378 CTGGAAACAACTCTCGCTTGAAGCGCT----CTGACGCAAGAATGCGAATCAGccgc-------tttttttctaaa----tgaa-aaaa-------------------attaggaa-------------gGGGAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3237125  99 -  4147112 CTGGA---AACTTTTGCATGAATTACTTCTGCTGACGCACGAACGGAAATCAGTgacacttg--tttttttcagaaatcttgaATAATA-------------------CTTTGGAG-------------AGGGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   241304 890 +   720316 I

a score=280826.000000
s ce10.chrX              2511874 560 + 17718866  
s cb4.chrX              17259470 494 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    94501 474 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 64
s caeSp111.Scaffold582    118000 471 +   484378  
i caeSp111.Scaffold582  C 0 I 23
s caePb3.Scfld02_0       3237224 489 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   242194 443 +   720316  
i caeJap4.Scaffold18213 I 890 I 32

a score=-6840.000000
s ce10.chrX              2512434 51 + 17718866 -------AGTTTTCGtaattttgatt-ttttaataattttttttCTAA--CTGAACGATTT
s cb4.chrX              17259964 48 - 21540570 aattataattttctgtcatttttaccatttttaggAGTTTGGAACTCG-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    118494 48 +   484378 -------agtttcttgaatat------tttcaaagtttttttttctcgtaacgaacaattt
i caeSp111.Scaffold582  I 23 I 71
s caePb3.Scfld02_0       3237713 11 -  4147112 -------------------------------aaagatgtTGT-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   242637 32 +   720316 I
e caeRem4.Crem_Contig15    94975 64 -  1794024 I

a score=-23390.000000
s ce10.chrX              2512485 524 + 17718866  
s cb4.chrX              17260012 380 - 21540570  
i cb4.chrX              C 0 I 67
s caePb3.Scfld02_0       3237724 330 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   242637  32 +   720316 I
e caeSp111.Scaffold582    118542  71 +   484378 I
e caeRem4.Crem_Contig15    94975  64 -  1794024 I

a score=-1327.000000
s ce10.chrX              2513009 81 + 17718866 ATTTGCCAAAACGGCCACATTTCTTGATCAGCCATTTCGAAAAACTTCCAAAACATTTTCATTACGGGTCGAAATTTtgga
s caePb3.Scfld02_0       3238054 16 -  4147112 -----------------------------------------aaactttcag------------------------tttGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   242637 32 +   720316 I
e cb4.chrX              17260392 67 - 21540570 I
e caeSp111.Scaffold582    118542 71 +   484378 I
e caeRem4.Crem_Contig15    94975 64 -  1794024 I

a score=-10232.000000
s ce10.chrX              2513090 187 + 17718866 aaaaagagatttcaggaaaatttggcacttttttttc-------------------gaaattttgacacgccataagaaattttaagaaatttgtcgagtatttgtgagacgtcccattatgaaattcggtcgt---------------ttttggcacgttttagtctatTTCAGCAGAATACC----CGCCAACTCTACTCTCCGCTTTAACTGAAATGTTTCA
s cb4.chrX              17260459 203 - 21540570 aaaaaaaaactcaaagaatGTTCCGC-CTTCCCTTTCTTCTAAAACAAGGTTTTTCGAAACCTAAAAAAGCtccagcaaatttttgaaacctgataaattaattttgg-----------ctaaaatttttttttggaaagtcacaaaaatttcg----atttt--tccactttttcgaaattccttctcggaaaaataattttttgaaaaaac--acattttt--
i cb4.chrX              I 67 C 0
s caePb3.Scfld02_0       3238070  87 -  4147112 ----------------AATG--------TTTCCTTGCTGCTTA---------------------------------CAAATCCTTGAGAATTT-TTaactaatttt--------------ccaaattattcCTC---------------CCTCG----ATTTCTGTCCAGTTT------ATTTC-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   242637  32 +   720316 I
e caeSp111.Scaffold582    118542  71 +   484378 I
e caeRem4.Crem_Contig15    94975  64 -  1794024 I

a score=0.000000
s ce10.chrX              2513277 3 + 17718866 TGT
e caePb3.Scfld02_0       3238157 0 -  4147112 C
e caeJap4.Scaffold18213   242637 32 +   720316 I
e cb4.chrX              17260662 0 - 21540570 C
e caeSp111.Scaffold582    118542 71 +   484378 I
e caeRem4.Crem_Contig15    94975 64 -  1794024 I

a score=-2796.000000
s ce10.chrX              2513280 5 + 17718866 AACCA-
s cb4.chrX              17260662 2 - 21540570 ---ca-
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15    95039 2 -  1794024 ---TG-
i caeRem4.Crem_Contig15 I 64 I 6
s caePb3.Scfld02_0       3238157 2 -  4147112 ---TA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   242669 5 +   720316 -AACAT
i caeJap4.Scaffold18213 I 32 C 0
e caeSp111.Scaffold582    118542 71 +   484378 I

a score=528345.000000
s ce10.chrX              2513285  980 + 17718866  
s cb4.chrX              17260670 1062 - 21540570  
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig15    95047 1033 -  1794024  
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    118613 1012 +   484378  
i caeSp111.Scaffold582  I 71 I 36
s caePb3.Scfld02_0       3238159 1045 -  4147112  
i caePb3.Scfld02_0      C 0 I 151
s caeJap4.Scaffold18213   242674 1159 +   720316  
i caeJap4.Scaffold18213 C 0 I 50

a score=-3326.000000
s ce10.chrX              2514265  2 + 17718866 GT----------------------------------------
s cb4.chrX              17261732 42 - 21540570 aaataatattgaaaaaatggcattgatgttaaaaataggttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    96080  2 -  1794024 at----------------------------------------
i caeRem4.Crem_Contig15 C 0 I 5
e caePb3.Scfld02_0       3239204 151 -  4147112 I
e caeJap4.Scaffold18213   243833 50 +   720316 I
e caeSp111.Scaffold582    119625 36 +   484378 I

a score=-1245.000000
s ce10.chrX              2514267 192 + 17718866 TCAATTTGTTTAGCAAAAAAATCTAAGTAGG------TACCAAACTCTTAAAATTGTTACAAGAAAACCAATCCTAAGGAGAAATTT-------------------TTAGAGTTTTTTTTTCAGACAAAAGAAAACATAGCAATAAAACTCAGGCCTAAAATATAGTTTCAAATTGAT-------------------------GAAC-TGTAGCCCGTTAA--------------ACTCTGAATATTTT----GGTTCAAA
s cb4.chrX              17261774 247 - 21540570 gcattttgttta--aaaatatcTTTCGCGGGCTATCTCATCAA--TATAAGATTCGCTAAATGGAATTTGATCT--ACGATAAATTTTGGTAGGTCTGAAGCACAATTTGAATGTTATTTATGTACAGAAACGGTccgagagatataaa--------aaaaattaatcttcGATTAATTTTTGGCCATTGTGACATCTTTCAGGAGTATGGAGCTCGATTGTCAGGTTTtcgattactttgaaaattttgaagggtgtaaa
i cb4.chrX              C 0 I 137
e caePb3.Scfld02_0       3239204 151 -  4147112 I
e caeJap4.Scaffold18213   243833  50 +   720316 I
e caeSp111.Scaffold582    119625  36 +   484378 I
e caeRem4.Crem_Contig15    96082   5 -  1794024 I

a score=0.000000
s ce10.chrX              2514459 79 + 17718866 CTATGTTATGGTAGCAGAAAAAATCACGAGGTTCTTTAGAACCGCTCAAACAGTGCTAATGGGCCCAAGTTCTACAGTA
e caePb3.Scfld02_0       3239204 151 -  4147112 I
e caeJap4.Scaffold18213   243833 50 +   720316 I
e cb4.chrX              17262021 137 - 21540570 I
e caeSp111.Scaffold582    119625 36 +   484378 I
e caeRem4.Crem_Contig15    96082  5 -  1794024 I

a score=391.000000
s ce10.chrX              2514538 259 + 17718866 AAATTTTAAAAAATTTGTGAAGTTTG---TTTTTTGAAAT--------TTCAGTTTAAAAAACAGGTGAACATTTTG---TTTTCA-----TCTATTGTAATT-----TCGGACATCGACCTGCAGCACACCT-------GCTGCAATGTTCGAAATTTATCAAAAAG-------GTCATATTTTTTATT-----AAAATTTACCAAAACGTTGACT---CTATATTTGAAAAAATCTGAAACTTTTAG----GAATTTCTTTAAATGA----TATTCTGACGTGTTAAACCAAACCAACTCCTCACAA---AAAT
s cb4.chrX              17262158 313 - 21540570 aaatcaacaaaaatctgaaaaactagaactttttcaaaattctgccaattcagtttttgatctaGATG--TGTTTTGAACTCTTCAAGACTTTCAATGTGATCAGAAATTTGACATTCAAGCTCcatactcctgaaaatggtcaaaatgattgaaaattacctgaaaaatatgttgttATATATTTCATCTGACGGTAATTTA-CATACTTCTGAATTTGCTAGGTCTGAAGCatcatttaaattttaaatataaatttttagaaattaaaatttttttcatgttttaaatactaccaaaaaagcaaaattcaaat
i cb4.chrX              I 137 C 0
e caePb3.Scfld02_0       3239204 151 -  4147112 I
e caeJap4.Scaffold18213   243833  50 +   720316 I
e caeSp111.Scaffold582    119625  36 +   484378 I
e caeRem4.Crem_Contig15    96082   5 -  1794024 I

a score=1722.000000
s ce10.chrX              2514797 28 + 17718866 ACATAACAAATTTTCGTACCAAAAAAAA
s cb4.chrX              17262471 28 - 21540570 gttcaaaaaatcctaatttcaaaaaacc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    96087 28 -  1794024 ACGTAAATGAtatcaatataaaaaaaaa
i caeRem4.Crem_Contig15 I 5 C 0
e caePb3.Scfld02_0       3239204 151 -  4147112 I
e caeJap4.Scaffold18213   243833 50 +   720316 I
e caeSp111.Scaffold582    119625 36 +   484378 I

a score=467.000000
s ce10.chrX              2514825 3 + 17718866 CTA
s cb4.chrX              17262499 3 - 21540570 ccc
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15    96115 3 -  1794024 ctc
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3239355 3 -  4147112 CTT
i caePb3.Scfld02_0      I 151 C 0
e caeJap4.Scaffold18213   243833 50 +   720316 I
e caeSp111.Scaffold582    119625 36 +   484378 I

a score=130533.000000
s ce10.chrX              2514828 131 + 17718866 ACCTCCAGATTATACTCCCCATTTGCCGCACTTCCGACCATCCTGTATCTTTTATTTCCAGGAAGTGGTTTGTCTCTATCCGTTCCGAGCCCAAAGTCATCTTTCATCCACTGTACCGGCCCTTGCTGAAA-----
s cb4.chrX              17262503 131 - 21540570 ACCTCCAAATTATACTCTCCATTTGCCGCACTTCCCACCATCCGATATCTCTTATTACCCGGCAGCGGTTTGTCTCTATCGGTACCCAATCCAAAGTCATCTTTCATCCACTGAACTGGTCCTTGCTGCAA-----
i cb4.chrX              I 1 I 7
s caeRem4.Crem_Contig15    96118 131 -  1794024 acctccAAATTGTACTCCCCATTGGCCGCACTTCCAACCATTCTGTATCTTTTGTTACCAGGTAATGGTTTATCTCTATCCGTACCCAATCCAAAGTCATCTTTCATCCATTGAACTGGTCCTtgctaaaa-----
i caeRem4.Crem_Contig15 C 0 I 22
s caeSp111.Scaffold582    119661 131 +   484378 ACCTCAAGATTATACTCTCCATTTGCAGCACTTCCAACCATTCGGTATCTTTTATTACCAGGTAATGGCTTATCTCGATCAGTTCCCAATCCGAAATCGTCTTTCATCCATTGAACTGGTCCTTGCTGAAA-----
i caeSp111.Scaffold582  I 36 I 573
s caePb3.Scfld02_0       3239358 131 -  4147112 ACCTCCAAGTTATATTCCCCATTTGCTGCACTTCCGACCATCCTATATCTTTTATTGCCCGGCAACGGTTTATCTCGATCGGTACCCAATCCAAAATCATCTTTCATCCATTGAACGGGTccttgctgaaa-----
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18213   243883 136 +   720316 ACCTCCAAATTATACTCGCCCCTTGCAGAACTTCCAATCATTCGATATCGTGGACTTCCCGGAAGTGGTTTATCCCGGTCAGTCCCCAGGCCAAAGTCATCTTTCATCCATTGCACTGGTCCttgctgaaacaaaa
i caeJap4.Scaffold18213 I 50 C 0

a score=90014.000000
s ce10.chrX              2514959 358 + 17718866  
s cb4.chrX              17262641 296 - 21540570  
i cb4.chrX              I 7 I 46
s caeRem4.Crem_Contig15    96271 373 -  1794024  
i caeRem4.Crem_Contig15 I 22 I 44
s caeSp111.Scaffold582    120365 334 +   484378  
i caeSp111.Scaffold582  I 573 I 38
s caePb3.Scfld02_0       3239519 383 -  4147112  
i caePb3.Scfld02_0      I 30 I 47
s caeJap4.Scaffold18213   244019 490 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2515317 35 + 17718866 CAATTGTGGTGAACATGGAAATGTGTTTTTGCAAA
e caePb3.Scfld02_0       3239902 47 -  4147112 I
e caeJap4.Scaffold18213   244509  0 +   720316 C
e cb4.chrX              17262937 46 - 21540570 I
e caeSp111.Scaffold582    120699 38 +   484378 I
e caeRem4.Crem_Contig15    96644 44 -  1794024 I

a score=-18285.000000
s ce10.chrX              2515352 60 + 17718866 AAGGAAGGCC-------GAAAAGAGA------GACACGCAATATTGAGAACAGTCATTATTAAAAAAGTA--------------------TTT
s cb4.chrX              17262983 56 - 21540570 AAAGAAGCTTGGATAAAGAGAAAAGG--ACAT--CACGCAACAT-------------Tattgaaaaaagg--------------------ttt
i cb4.chrX              I 46 I 66
s caeRem4.Crem_Contig15    96688 56 -  1794024 ataaaagtttgaat---GAGACAAGA--TTAT--CACGCAATGTAGA----------TATTATTAAAACT--------------------TCT
i caeRem4.Crem_Contig15 I 44 I 11
s caeSp111.Scaffold582    120737 76 +   484378 ataagagAAT--AT---GAAGGAAGA--CGAGTACACGCAATGTGGC----------AATTACTAGGATCCtcgaaaaaagcagaaattTTCT
i caeSp111.Scaffold582  I 38 C 0
s caePb3.Scfld02_0       3239949 65 -  4147112 aaaagaga---------gaaagaaaattttagTACACGCAACGTCGA----------AATTATTAAAACC---------AGTAGACATTTTCT
i caePb3.Scfld02_0      I 47 C 0
s caeJap4.Scaffold18213   244509  8 +   720316 ---------------------------------------------------------AATTCATT----------------------------
i caeJap4.Scaffold18213 C 0 C 0

a score=-4028.000000
s ce10.chrX              2515412 26 + 17718866 AGAGCTTCTAG--TAGGAAACTTAACAT
s caeRem4.Crem_Contig15    96755  7 -  1794024 AGTGGTT---------------------
i caeRem4.Crem_Contig15 I 11 I 35
s caeSp111.Scaffold582    120813 28 +   484378 AGTGGCTCTACGGAAATGAGTTGGACAC
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3240014 26 -  4147112 AGTGGTTCTTC--CAATGAGTTCCACAC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   244517 25 +   720316 ACGGTTTCAAG--TAcggactttaaaa-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17263039 66 - 21540570 I

a score=112631.000000
s ce10.chrX              2515438 240 + 17718866 GTAGA--TTCTTAACGCACAGCTTTCTGTTCAAAATGTATTTT-CAAAATGATTTTC-CTATTGTTCTGATGCTCAATCATC--GAGAAGAGAAAAAAAAACGATGGAAAGAAAGTTGAGAAGTTGA-------GAAGCAAAATTTTTGTGGGATAAGAAATGATGATGTGGTC------------------------GAGGCG--AGACGCAAACACAGGCACACACACACACACGTTTCTCACATTG----CAAAAAGTTAGCGCGAGTCAATCTCCCTGC
s cb4.chrX              17263105 190 - 21540570 GGACA-------CACGTCCAGCTGTCCGAT---------------------ATCTTC-CGATTGTTTTGGTGCTCAATCATTTGGGCGAGAAAC------------GAGAGAAAGTTGAGAAG-CGC-------GAAAATT-----TTTGGGGATAAGAAATGATGATGTG---------------------------GAAGCGCAAGACgcaa--------acacacacacacacatttcTCACATTG----CAAAAAGTTAAAGGCGCTCCCCTCCCCAGC
i cb4.chrX              I 66 C 0
s caeRem4.Crem_Contig15    96797 197 -  1794024 aaaaaGGACCAGTATGTCCAGCTGTCCATT--------------CAAAATGATCTTC-CGATTGTTTTGGTGCTCAATCATT--GGCGA-----------------GAGAGAAAGTTGAgaagttga-------gaagaaa-----atttgGGATAAGAAATGATGATGTGGTT------------------------GAAGCG--AGACGCAA----------ACACAGACACACGTTTCTCACATTG----CAAAAAGTTAGCGCGAGTCACTCTCCCTGC
i caeRem4.Crem_Contig15 I 35 C 0
s caeSp111.Scaffold582    120845 198 +   484378 AAAAG-AACCAAGATGTCCAGCCGTCCATT--------------CCAAATGATTTTC-CGATTGTTTAGGTGCTCAATCATT--GAGGAGCG--------------AAGAGAAAGTTGAGAagttga-------gaagaaa------tttGGGATAAGAAATGATGATGTGGTT------------------------GAAGGG--AGACGCAA----------ACACAGACACACGTTTCTCACATTG----CAAAAAGTTAGCGCGAGTCACTCTCCCTGC
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3240044 196 -  4147112 AAAAG--ACCAGGATGTCCAGCTGTCCATT--------------CCAAATGATCTTC-CGATTGTTTTGGTGCTCAATCATT--GGGGA--A--------------GAGAGAAAGTTGAGAAGTTGA-------GAAGAAA-----TTTTGGGATAAGAAATGATGATGTGGTT------------------------GGAGGG--AGACGCAA----------ACACAGACACACGTTTCTCACATTG----CAAAAAGTTAGCGCGAGTCACTCTCCCTGC
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   244542 203 +   720316 ------------------------------------aaattctgggaAATTATGAACATGATTGTTTTG-------Agcaaa--agaga-----------------gagagagagacaaaaAATCACCCCTGTTGAGGAAA-----TTTTGggataaaaaataatgatGTGGTTGAATGATGCACAGACGGACGGACGGAGACG--GGACACAA----------ACAAAGACACACGTTTCtcacattgaaaaaaaaaagttagacCGAGGCAC-CTCCCCGC
i caeJap4.Scaffold18213 C 0 I 45

a score=976.000000
s ce10.chrX              2515678 33 + 17718866 -GGACTTAGGCGGTGGT-----GCGGGTCCCCCCAATGC
s cb4.chrX              17263295 23 - 21540570 GGGACCCAAGC--TAA------CCGGG--------AGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    96994 32 -  1794024 -GGACCTACGC--CGGTTTCTTTTGGG----CCCTACGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121043 27 +   484378 -GGATTTACGC--TGGTCCCTC---------CCCAACTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3240240 32 -  4147112 -GGACTTATGC--TGGTCCGTTTCGGA----CCCAACGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   244745 45 +   720316 I

a score=21285.000000
s ce10.chrX              2515711 29 + 17718866 AGCCTCTCATTAAA--TATCGTCTAACGGGA
s cb4.chrX              17263318 29 - 21540570 AGTCtctcattaaa--ttttttcgtttaGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    97026 29 -  1794024 AGCCTCTCATTAAA--TATCGTCTAACGGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121070 31 +   484378 AGCCTATCATTAAATGTATCGTCTAACGAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3240272 31 -  4147112 AACCACTCATTAAATGTATCGCCTAACGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   244790 29 +   720316 AGCCTCTTATTAAA--TATCGCGAGACGAGA
i caeJap4.Scaffold18213 I 45 I 274

a score=4640.000000
s ce10.chrX              2515740 5 + 17718866 TGATT
s cb4.chrX              17263347 5 - 21540570 TGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    97055 5 -  1794024 TGATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121101 5 +   484378 TGATT
i caeSp111.Scaffold582  C 0 I 216
s caePb3.Scfld02_0       3240303 5 -  4147112 TGATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   244819 274 +   720316 I

a score=6217.000000
s ce10.chrX              2515745 19 + 17718866 GGAGGGAATTGTCGTTAGT
s cb4.chrX              17263352 19 - 21540570 GGAGGGGAAAGCTTTTGGT
i cb4.chrX              C 0 I 657
s caeRem4.Crem_Contig15    97060 19 -  1794024 GGAGAGGATTGTTGTTAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3240308 19 -  4147112 GGAGGGAGTAGTCGTTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   244819 274 +   720316 I
e caeSp111.Scaffold582    121106 216 +   484378 I

a score=-174.000000
s ce10.chrX              2515764 11 + 17718866 AGTAGTTATGT
s caeRem4.Crem_Contig15    97079  2 -  1794024 --------CG-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3240327 11 -  4147112 AGTAGTTATGT
i caePb3.Scfld02_0      C 0 I 333
e caeJap4.Scaffold18213   244819 274 +   720316 I
e cb4.chrX              17263371 657 - 21540570 I
e caeSp111.Scaffold582    121106 216 +   484378 I

a score=1069.000000
s ce10.chrX              2515775 151 + 17718866 AGGTTCTCATATTGTTTTTTAGTACTTGTGTAGTATGTATACCTGCCCCAAAAATAATTTCCTATGTGTTTTCCATTCATTTCTATGGAAAATG-----ATAATTCAATCAAAACTTACAATTAATTTTCACTTCTTGGCTTAGAAAAACACTAAC
s caeRem4.Crem_Contig15    97081 124 -  1794024 ---------------TTTGTAGTATTTATG---------TACCTGCTTCACAAA-----CCGCAGGTGTTTTTCCATGAGACCCAAGAAAAAGATTCGTATTGTTCCAAAGAAATGTTCAGGAAAATTTGA---CTAGgattaagaaaaaactgac
i caeRem4.Crem_Contig15 C 0 I 87
e caePb3.Scfld02_0       3240338 333 -  4147112 I
e caeJap4.Scaffold18213   244819 274 +   720316 I
e cb4.chrX              17263371 657 - 21540570 I
e caeSp111.Scaffold582    121106 216 +   484378 I

a score=0.000000
s ce10.chrX              2515926 888 + 17718866  
e caePb3.Scfld02_0       3240338 333 -  4147112 I
e caeJap4.Scaffold18213   244819 274 +   720316 I
e cb4.chrX              17263371 657 - 21540570 I
e caeSp111.Scaffold582    121106 216 +   484378 I
e caeRem4.Crem_Contig15    97205  87 -  1794024 I

a score=582.000000
s ce10.chrX              2516814 28 + 17718866 AATCTTCTAGAAAA--AATGA-----GACTTTCAC
s cb4.chrX              17264028 35 - 21540570 aaacttccaaaaaatgaatgatttcTGACTTTTCG
i cb4.chrX              I 657 C 0
e caePb3.Scfld02_0       3240338 333 -  4147112 I
e caeJap4.Scaffold18213   244819 274 +   720316 I
e caeSp111.Scaffold582    121106 216 +   484378 I
e caeRem4.Crem_Contig15    97205 87 -  1794024 I

a score=273.000000
s ce10.chrX              2516842 1 + 17718866 A
s cb4.chrX              17264063 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    97292 1 -  1794024 A
i caeRem4.Crem_Contig15 I 87 C 0
e caePb3.Scfld02_0       3240338 333 -  4147112 I
e caeJap4.Scaffold18213   244819 274 +   720316 I
e caeSp111.Scaffold582    121106 216 +   484378 I

a score=9143.000000
s ce10.chrX              2516843 108 + 17718866 ACAA------ATTTCCAGTTTCCGTTTTCAAAAGAAA-TTTGTCAATTTTTTGTTACACACATAATCTCTGGGCACCAAAACGAAAAACGAGGTGTCTCCCTATTCGACCAA--------TTC
s cb4.chrX              17264064 106 - 21540570 ACCAGCTGGGACCTC-AGCCGgtgcattcaaaaaaaatttaaccaATATGTCACATTCAT-AGAATCCTTCGCCCCCAGAAAAACAAATGGGGTCTC-----AT---ATTGGG-------GTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    97293 103 -  1794024 ACAA------ATTTT-AGCGGACGCGTTCAAAGGAAA-TTGACCAATATGTcacattcagaaaaatcccTGGCCACCAAAACCAAAAACGAAGTGCC-----ATTTGACCATA-------AGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121322  97 +   484378 ACAC------ATTTCAATCGGACGtgttcaaagaaaa-ttggtCAATATGTTACA--------------TGGTcacaaaaaccgaaaacgAAGTGCC-----ATTTGAGCACAAATAGGAAAG
i caeSp111.Scaffold582  I 216 C 0
s caePb3.Scfld02_0       3240671  95 -  4147112 ACAA------ATTCTTATCGGACGTGTTCAAAGGAAA-TGgaccaattttttaaaat------------ttggaacCCAAACCACAAAAGAAGTGAC--------CAAACACATTTCTT-gag
i caePb3.Scfld02_0      I 333 C 0
e caeJap4.Scaffold18213   244819 274 +   720316 I

a score=226404.000000
s ce10.chrX              2516951 543 + 17718866  
s cb4.chrX              17264170 581 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    97396 515 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121419 526 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3240766 528 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   245093 492 +   720316  
i caeJap4.Scaffold18213 I 274 I 594

a score=9257.000000
s ce10.chrX              2517494 58 + 17718866 GCAACGAGAAccccccccccccccccccccccccccGCCACACACGTTTT--GTTTTGGT
s cb4.chrX              17264751 31 - 21540570 GATaaaaaaaaCC-----------------------------cacgtttttgtttttggt
i cb4.chrX              C 0 I 347
s caeRem4.Crem_Contig15    97911 29 -  1794024 GCAAAGAAAAACC-----------------------------CACGTTTT--GTTTTGGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    121945 27 +   484378 -CATTGAAAAA-C-----------------------------CACGTTTT--GTTTTGGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3241294 28 -  4147112 -TAGCGAAAAACC-----------------------------CACGTTTT--GTTTTGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   245585 594 +   720316 I

a score=13837.000000
s ce10.chrX              2517552 56 + 17718866 AGCAAGAGCAC--AGCGAACTGAGAAAAACGAGCAGAGTATCTGATGGATGCACTTCT
s caeRem4.Crem_Contig15    97940 52 -  1794024 -----AGGCAATGTGTGTCCC-AGAAAAACGAGCTAAGGATAAGATAGATGTCCTTTT
i caeRem4.Crem_Contig15 C 0 I 170
s caeSp111.Scaffold582    121972 50 +   484378 -----AGGCAA--TGGCTCCT-AGAAAAACGAGTCGAGGATAAGATAAATGTCCTTTT
i caeSp111.Scaffold582  C 0 I 169
s caePb3.Scfld02_0       3241322 50 -  4147112 -----AGGCAA--TGCGTCCT-AGAAAAACGAACCGAGGATAAGATAAATGTCCTTTT
i caePb3.Scfld02_0      C 0 I 497
e caeJap4.Scaffold18213   245585 594 +   720316 I
e cb4.chrX              17264782 347 - 21540570 I

a score=0.000000
s ce10.chrX              2517608 227 + 17718866 CAAATAAAGTAACGTCTCGTAGACAGATGCGATAAATAACAGCTCGATATGCAAAAGTTCGAAGGCTGGAGAATTGAAAGTTCTTGCCTAAGTCCGTTCTATAAGTCACCTGTGAAAATTTATTCAGCATAGTTTTGGACCATCGTATTTTCTCTACTGTAAGGCTAGTTTGACAAAAAAATGGGCTGGTTGGAAAATAAATCCATTCCAATAAATACAGAGGAGCT
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e cb4.chrX              17264782 347 - 21540570 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=-511.000000
s ce10.chrX              2517835 218 + 17718866 TTGA--ACGTATTTCCATATATTTTACCCAAAAAGGTGACAAATTTTCAAAACCTTTCA------CTATAAAATCCTCTGAAAAAAAGTTAGTGTAGTATTATTGGTAATATTAATAGAAACCGGCAAACAAACTATTTTCTAAAAAGGTGGGAGACTTATAGGGATGCAAGTCTATTAGGAGCTCTGA----AAGAATAAGCTAAATATAATAGTCATAGAACGCGCTC
s cb4.chrX              17265129 199 - 21540570 TTGATAACgttatgataaatgatttac-----aaggtaa--attttttgatatctctcatagtacctagataattaagcttaaagcATTCATCGTAGT-----TGATTAtaccatt--------tcaaaaaaacgagttgaaatgaaaatgag-----tgtgaaaatg--agaaaatgagaaaatctaattttgaggataa--taaagttcaaaat--tcgaacGTAATC
i cb4.chrX              I 347 I 31
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=0.000000
s ce10.chrX              2518053 22 + 17718866 CATGAAGTGAAgaggaacttgg
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e cb4.chrX              17265328 31 - 21540570 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=1081.000000
s ce10.chrX              2518075 102 + 17718866 ttcaaaacatggttatc----gtaccacaatgacctaatatcatattttaaataattcaaaaaaattccaaattttat-------ttgattttt-----tgaaaattagattaatctc
s cb4.chrX              17265359 118 - 21540570 ttcGTAACTTGTATATCAATTGCACAAAAATGTTACAGAAGTTTTGCTTTCGAAAGTcggcaaattttcaaattctatggattttttaatttttctatgtAAAAGTCACACTATTTTC
i cb4.chrX              I 31 I 48
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=0.000000
s ce10.chrX              2518177 47 + 17718866 AGTTTTTGCCCCTTCTTTGCCACTTTTTTTCGATCACAAAAATGTGT
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e cb4.chrX              17265477 48 - 21540570 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=-270.000000
s ce10.chrX              2518224 244 + 17718866 TTTCCTACAAAATTAATGATCTACTTATGTTTCAAATATTAATATCAAACGTTGTAGAAATTCCAACAT-GCGACT----------ATAATTTTCTCGCAATGTGGCAAATACTCAAATATTG-CCACTTTTTGACAGTCAAT----------AAAAAAGTCTAAT-TTTCTAACAAAAA------------------AAATTAA-------------------TATTGTTCACTATAATTTTAATC----TTCTGTGTAATTGAAGCAGTAGATTAGCTTTTCAACTACAAT------------AACTCAGAAAATAT------------A
s cb4.chrX              17265525 298 - 21540570 tttcctctaa---caaAAACCTACCTAA---------------ATCGACCACTGT-GAACTTCAACTATcgcgatttctgtgaaagataact-----ACAacttgacaactgataaaatattggtcacttttttataattaatttatttgttgacaaatttctaatatctttcacagaaatcaagataatcgagctcaaagttgacggcttgggCGGCTTTCTATCTTAGtaaatatggtttttttccaaattctatGTAA----------GGCTCAACTTCTCAACAAAAACGTTTCGAGCTTGAACTCCACAAGCATCTACGCTTTTTCA
i cb4.chrX              I 48 C 0
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e caeSp111.Scaffold582    122022 169 +   484378 I
e caeRem4.Crem_Contig15    97992 170 -  1794024 I

a score=964.000000
s ce10.chrX              2518468 28 + 17718866 AAGTCTAGAAAGAAAATGCAAAACTAGT
s cb4.chrX              17265823 28 - 21540570 AAACCCACTCATCACATTGTTAACGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    98162 28 -  1794024 AAACTTAGTCATAAATTGCTAAACGCGC
i caeRem4.Crem_Contig15 I 170 C 0
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I
e caeSp111.Scaffold582    122022 169 +   484378 I

a score=-1420.000000
s ce10.chrX              2518496 40 + 17718866 ACATCCATCATCAC--ATTCTAACACCCCTACTCATATGTGA--
s cb4.chrX              17265851 28 - 21540570 TCATCCATCAATCCGCCTTCCGA----------------TGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    98190 19 -  1794024 TCATTCATCATTAC-------------------------TGAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    122191 25 +   484378 ACATTCATCATTGG-ATTTCTGA----------------CAA--
i caeSp111.Scaffold582  I 169 C 0
e caePb3.Scfld02_0       3241372 497 -  4147112 I
e caeJap4.Scaffold18213   245585 594 +   720316 I

a score=78222.000000
s ce10.chrX              2518536 464 + 17718866  
s cb4.chrX              17265879 405 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    98209 462 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    122216 428 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3241869 420 -  4147112  
i caePb3.Scfld02_0      I 497 C 0
e caeJap4.Scaffold18213   245585 594 +   720316 I

a score=51351.000000
s ce10.chrX              2519000 81 + 17718866 G------GTTACGGATGAGTGCCCAAGGAGCACAGTGATTAGGTTCACAC--GGCACCAATTAGAAAGGGTGACGAT---GTAAGTAGATTA
s cb4.chrX              17266284 75 - 21540570 -------GTTACGGATGACCGCTCA--------AGTGATTAAATTGACGCGAGACACCAATTAGAA--ACTGAGGACTCGCTAACTGGATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    98671 85 -  1794024 GTCGTGTGTTACGGATGACCGCTCAATGAACACAGTGATTAAATGGAC----GACACCAATTAGAAGTGTCGAAGGC---CTAACTGGATTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    122644 85 +   484378 GTCGAGGGTTACGGATGACTGCTCGATGAACACAGTGATTGGGTTGAC----GACACCAATTAGAAGTGACGAAGGC---CTAACTAGATTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3242289 80 -  4147112 GTCGTCGGTTACGGATGACTGCTCAATGAACACAGTGATTAGGTTCGC----AACACCAATTAGAAGTGACGAAG--------ACTGGATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   246179 78 +   720316 ------GGTTACGGATGACCGGCCAATGAACATTGTGATTAGGCTCAC----GACACCAATTAGACGTGAATGAGAC----TAAGCAGATTA
i caeJap4.Scaffold18213 I 594 I 452

a score=-21973.000000
s ce10.chrX              2519081 361 + 17718866 TGGCATCACTTC---------TTGGTAACATTTTGAATCGCCA--AGCA-------CCGAAGAGTCGC---------AATTAATCACTGTGCA--AGGTTGGTTGGGAGA--GCAACAAATTCGATCTACCGGGGCGGTGAAAAGAGATAGATGTGAAACAGGGG-GAATAATAATTACATATTGTTG--------------------------------TGA---TG--TGTTTCGTAAAAATCCAGAGGATTAGCTGAAAGGATAAGGATGGGTGACGAGAAGGGAC-------ATGTAGAAGTAGGAGTAGTAGTAGT--------AGGTGCGGGATTTTTTGT--------TGTATAACTT------GAAGGGGTTTTCAGGAA------------AAAGCTACAAATTGGTGAAACAAGAACTAGCAGTTTGTCGAATTCCAGGAAG---TTCTCATTT-TCggaaaatt----------------
s cb4.chrX              17266359 298 - 21540570 AC-TGGTGCATC---------TTGGCAACA---TCCAGTGCTCAAGAGATCATGTagcaa--aattgaagaattgcTAATTAATCACTG-GGA--AAGTCC----GGTGA--GAAACAAATTTGAT-----AGGG-------GGGAGCAAGAGATAGAAAAGCgtagaataaaaat----tattatta-----------tcgC---GATGAGAAGCG---TGTATGCG--TGTTTTGTAAGAATCCAGG-----ATTTCT--------GGATCA----------------------AGTTAggattagaaatttttgaaaa-------------------------------------gaaagct------gtacgtttttttttcag------------aaggcGGAA------------------------CCAGAAAAAC----AACAT---TTgcaaaat-gctcaaaatttcaa------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    98756 376 -  1794024 GTGTTTCACATC---------TTGACAACAAACCCAAGTGCTC--TGGATCATGAGGACATGGGTTGA---------AATTAATCACTG-CCA--AGGTttg--agagaa--gaaacaaatttgaT-----AACA-------GGGGGAAGGAtaggaaaaatc---gaataatAAT----TCATGTTGAAATACGTGattcgtaaaaatgaaaaaagaaatggatgtgaaagatatgtaaaaaTACAGG-------------------GGATTAGTG------TGGTATTTTCCGTATATagaattggaaattttagaaag----AGTTGTGTGTTAAATCCAATGT-----------AAAAGCT------CTActattttctgcaaa------------aaaattgtaag-aAGTGATTCTAGTACCAGT--Ccgacaaaac----aaaaa---ctgaaattt-cagtaagATCACAAACTTTGTGAACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    122729 356 +   484378 GTACAtcacttcttcttattcttggCAACATA-CAAAATGCTC--TGAA----GT-GCAAGCAATTGA---------GATTAATCATTG-GGAGCAGGTTTA--GAAGGA--GAAACAAATTTGAT-----AGG--------AATAAAGGGATAGGAAATGTC---AGATAATAAT----TATTGTTG--------------------------------TGA---TG--TGATTCGTAAAACTCGTGG-----ATttagaagaaagaggagaggAGGATATGcagaaatattcagaaatagCAGG-GGGATTAGAGTAGTGTAGATTGATGATTTAGATTtaatctagaaaaactaaaaaagtttatCGGGGACTACTTTCTGGGAA--AGATC-----AAAACAGAA------------------------TTTGTAAAATT--AAAGAAAGTTTGTTGGct-cttgaaaatt----------------
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3242369 340 -  4147112 GTGCATCATTTC------TTATTTGTAACATA-CAAAATGCTC--CGGATCATGA-GCGAGGAATTGA---------AATTAATCACTG-GCA--AGGTTTA--GAGAGAAGGAAACAAATTTGAT-----AGGG----GACAGAAAAGAGATAGGAAATGTC---AGATAATAAT----TATTGTTG--------------------------------TGA-TGTG--TGTTTCGTAAAAATCCAAG-----AATTAgtgagaaaaggagaaaag-----------attTTTATAAATAGCAGGAGGGATTATATTATTATTTAGTGAT-AGTAGGATTTTATAT--------------AGTTTTGCGAGTATTATTTTCGGTGCACTGAATTGTTGGAGAACTGAA------------------------CTtgctgaact--gaaaaa---ttactaACTACTTGAAGATT----------------
i caePb3.Scfld02_0      C 0 I 46
e caeJap4.Scaffold18213   246257 452 +   720316 I

a score=-3280.000000
s ce10.chrX              2519442 32 + 17718866 gcacaggatgcgtac-----------------agttttgccggttgaaa
s cb4.chrX              17266657 16 - 21540570 ------gaggGTTCT-----------------ACACTT----------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    99132 24 -  1794024 ------GAAGAGTAT-----------------GCTCTT--CAGATGaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123086 41 +   484378 ------gagaacTTCCAGTTTCCTataatccaattttt--cagtagGAA
i caeSp111.Scaffold582  I 1 I 3
e caePb3.Scfld02_0       3242709 46 -  4147112 I
e caeJap4.Scaffold18213   246257 452 +   720316 I

a score=-6685.000000
s ce10.chrX              2519474 37 + 17718866 -------ttgaaattc-------tggaagt-------------tccaga---aaaaatgtgcaaaac
s cb4.chrX              17266673 37 - 21540570 TCTGAACTTGAGAACTTAGAAAAAGGaact-------------t--------aaaaaa---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    99156 45 -  1794024 accaaatttactaattttttgaaaagaact-------------tcaaaataccaaaat---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123130 40 +   484378 -------TTGAGAATC-------AGGAATC-------------TCTAAcagataaaagaagaaaatc
i caeSp111.Scaffold582  I 3 I 98
s caePb3.Scfld02_0       3242755 53 -  4147112 -------TTGAGAATC-------AAGTTTCAACTGAACTCtgatcaaaaaggaaaaaaaagtaaatt
i caePb3.Scfld02_0      I 46 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I

a score=-5882.000000
s ce10.chrX              2519511 46 + 17718866 cacaatttgc-----ctaaaattgttggCAATTTCCGTTT---------TTCCGGCAAAA-
s cb4.chrX              17266710 41 - 21540570 -tcaattttcaag--taAAAAGTTT-----------GTTTGAAG-----TACCACCAAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    99201 50 -  1794024 -ttagttttc-----taaaaaatctcTGAC----CGCTTAGAAGctttctttattcaaaa-
i caeRem4.Crem_Contig15 C 0 I 80
s caePb3.Scfld02_0       3242808 60 -  4147112 -tggatttttgcggctcaaaagtttttttcttcacgaTTCAGATCCGGTCACCCACGAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I
e caeSp111.Scaffold582    123170 98 +   484378 I

a score=-1780.000000
s ce10.chrX              2519557 1 + 17718866 --T
s cb4.chrX              17266751 1 - 21540570 -C-
i cb4.chrX              C 0 I 64
s caePb3.Scfld02_0       3242868 1 -  4147112 A--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I
e caeSp111.Scaffold582    123170 98 +   484378 I
e caeRem4.Crem_Contig15    99251 80 -  1794024 I

a score=-1190.000000
s ce10.chrX              2519558 63 + 17718866 AGGCGAATCGGCAGATCTGCAGGTCTGCCGATTTGCCC---TGTTACACATCCTCTAATAGTCAAC
s caePb3.Scfld02_0       3242869 48 -  4147112 AACGGAGCAGATAGAATTATGGAACT--CGATTGAACAAAATGGGGCACA----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I
e cb4.chrX              17266752 64 - 21540570 I
e caeSp111.Scaffold582    123170 98 +   484378 I
e caeRem4.Crem_Contig15    99251 80 -  1794024 I

a score=0.000000
s ce10.chrX              2519621 5 + 17718866 GCCAT
e caePb3.Scfld02_0       3242917 0 -  4147112 C
e caeJap4.Scaffold18213   246257 452 +   720316 I
e cb4.chrX              17266752 64 - 21540570 I
e caeSp111.Scaffold582    123170 98 +   484378 I
e caeRem4.Crem_Contig15    99251 80 -  1794024 I

a score=2347.000000
s ce10.chrX              2519626 19 + 17718866 TCGAAAGAGCA------------AAATCTGT
s caeRem4.Crem_Contig15    99331 29 -  1794024 CAGAAAGAGCAagtcttt--cgaaaatctgt
i caeRem4.Crem_Contig15 I 80 I 1
s caeSp111.Scaffold582    123268 31 +   484378 CAGAAAGAGCAACTTTCTTTGCAGAATCTGT
i caeSp111.Scaffold582  I 98 C 0
s caePb3.Scfld02_0       3242917 21 -  4147112 --GAAAGAGTAAGTCCAC-----AAATC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I
e cb4.chrX              17266752 64 - 21540570 I

a score=1163.000000
s ce10.chrX              2519645  6 + 17718866 ------TGTTGC
s cb4.chrX              17266816  3 - 21540570 ---------TGC
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig15    99361  6 -  1794024 ------gGTTGC
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    123299 12 +   484378 TGTCCTCCTTGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3242938 12 -  4147112 TGTCCTCCTTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   246257 452 +   720316 I

a score=130226.000000
s ce10.chrX              2519651 313 + 17718866 CTTTCTTCCGGAATCGCCGTCGAGTCCATTAATGAGCTCGATTATACCGATAATTCAGTTTGGCATATCTTCACGTAATGACCG-------------TTAAT-AGGAGGTCCCAAGCAAGAGTAGTTTCT---C-GAAATATGGCCCC--------AAGGAAT-----ACTAAAGAAAC----------------------TGAGAGCTAAGTTGAGATG--------TACGCAACGAAATGTGAAATCTGATGAATTTGT------------GAGGCG-----------------------------------AAAAAATGGATTAAATGTCAGTTGTACTAATATAATT---GTTTTTTTTTTCGTTGCCGCGCGGCTAAG------------ATGTTTTCACTGAATGCGC-CAA------------TGTGGTTCGAGTCTTGA-----AA
s cb4.chrX              17266819 391 - 21540570 TCTTCCTCT----TCCAAG--AAGTTCATTAATGAGCCCGATTATACCGATAATTCAGTTTGGCATATCTACACGCAATGGCCCTCCTCCCGGCCGTTTAAGGAGGAGATAGA--GAAAGAGCAATTTGT---CGTAAATATGGCCTT---GGAGAGTGAGAT--GAGGTTCATGAAAACgtacaaaaagaaaagaatat-agaaaa--attttgagatgatGAGCACCATGCAAC-------GAAATCTGATGAATTTGT------------GAGCCGTATCGTTGGAGCAAAGCAACGAgacgaaaatgaaaaaagaatggaTTGAATGTCAGTTGTACTAATATGATT---TCTTGTGC-------------GCGctttgcgaaaaaaaacaatgttttggATG--TACAC-AAAG------CTTCTTGGGGTGTAACATTTCGACTCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15    99367 299 -  1794024 TCTTCC---------------GAGTTCATTAATGAGCCCGATTATACCGATAATTCAGTTTGGCATATCTCCACGTAATGGCCA-------------TTAAG--GGAGGTCCC--GCACGAGTAATTTAG---TTGAAATATGGCCCTTAGGAATAACGAAAT--GGGatgaatgaa------------------------agagaa--aatttgagatg----------tGCAAC-------GAAATCTGATGAATTTGT------------GAGCCGTGTCGCC----------------------------AAAAAATGGATTGAATGTCAGTTGTACTAATATGATT---TTTTGCTC-------------CGACTTAG-----------AATGTTTTTGTTGGATGCAC-AAAGACGCAACTTCTTGTGGTCTAACACTTTG-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123311 311 +   484378 TCTTCT-------TTCGAGTTCAGTTCATTAATGAGCTCGATTATACCGATAATTCGTTTTGGCATATCTTCACGTAATGGCCA-------------TCGAG--GGAGCTCCC--GCTCGAGTAATTTGT---C-AAAATATGGCCTT-------CCCGGAATAAGGGTCAGACGAAAC-------------AAAGTTGC-TGG-AA--AATTTGAGATG----------TGCAAC-------GAAATCTGATGAATTTGT------------GAGGCGtgtcgaag---------------------------aaaaaatggattgaaTGTCAGTTGTACTAATATGATT---TTTTGCCT-------------CGACTGAG-----------AATGTTTTCGTCTGATGTAC-AAAGACGCAACTTCTTGTGGTCTAACACTTTG-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3242950 312 -  4147112 TCTTC----------CGAGTTCAGTTCATTAATGAGGCCGATTATACCGATAATTCAGTTTGGCATATCTTCACGTAATGGCCA-------------TTGAG--GGAGGTCCC--GCAAGAGTAATTTGT---C-GAAATATGGCCCT-------AGAGGAAT-AGTGCCAcacgaaaa-----------agaaagttgcATGGCAA--AATTTGAGATG----------TGCAAC-------GAAATCTGATGAATTTGT------------GAGCCGTGTCGtcg---------------------------aaaaaatggattgaatGTCAGTTGTACTAATATGATT---TTTTGCCC-------------CGGCTAAG-----------AATGTTTTTGTCGGATGCACAAAAGCCGCAACTTCTTGTGGTCTAACACTTTG-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   246709 322 +   720316 CTTTGTCCCGCTTTCCAAGTTGAGCTCATTAATGGGGTCGATTAGACCGATAATTCAGTTTGACATATCTTCACGTAATGCTCA-------------TTGAA--AGAGTCTTT--CTCGGCCTAATTTATGCCC-GAAATACTGGTTG--------AGGAAGT-------TCAAGAAGT----------------------TGCAAA--GTgtggaaaag----------aagaaa-------gaaatttGATGAATTTGTGGCTAGACTGGCGAAACGGGTCACGGGtcaaaaaagaagg-------------aaaggaAGGATTGAATGTCAGCTGTACTAATATGATTTGATTTTATTCTAC----------GGAccaag--------aaaaatgtttttatttggcGTCT---------------TTGAGTCTCGGAA------------
i caeJap4.Scaffold18213 I 452 I 191

a score=-20183.000000
s ce10.chrX              2519964 68 + 17718866 ACAAAAGAAAACAACTAACAACTTATCTGATTCTTCCTTTCTCTTTTT-----------------------------------TGT-------------------C-TTTAAATT----------------GTATTTGT
s cb4.chrX              17267210 64 - 21540570 AACTGGGAAAAC----AACAAGTTATCTGATTC---------CTGCTT-----------------------------------CGA-------------------TGttctaaattttattttctatcTAT--------
i cb4.chrX              C 0 I 80
s caeRem4.Crem_Contig15    99666 17 -  1794024 -------------------------------------------TATTT-----------------------------------CGa-------------------c-ttgaaaac------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123622 17 +   484378 -------------------------------------------TATTT-----------------------------------CGa-------------------c-ttgaaaac------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3243262 68 -  4147112 -------------------------------------------TATTTCGacttgaaaacaagaaaacaactaACAAGTTATCTgattcctccttcttcttctctc-tttaa---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   247031 191 +   720316 I

a score=-28448.000000
s ce10.chrX              2520032 495 + 17718866  
s caeRem4.Crem_Contig15    99683 191 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123639 180 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3243330 139 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   247031 191 +   720316 I
e cb4.chrX              17267274  80 - 21540570 I

a score=11392.000000
s ce10.chrX              2520527 40 + 17718866 ATCGT-AAATTGAATACGAGT--TAGTAAAAAGAATGCTT--TGG
s cb4.chrX              17267354 36 - 21540570 ATTGT-AAATCCAAT--------GGTTAACAAAAATGCATAGAGA
i cb4.chrX              I 80 C 0
s caeRem4.Crem_Contig15    99874 42 -  1794024 ATTGT-AAATTGAATACGAGTTGGGAGGAAAAGAATGCAT--AGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    123819 43 +   484378 ATTGTGAGAATGAATACGAGT--TGTTGAAGAGAATGCATAGAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3243469 34 -  4147112 ATTGT-AAATTGAATACGAGT--TGGTGAAAAGA--------AGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   247031 191 +   720316 I

a score=109718.000000
s ce10.chrX              2520567 298 + 17718866 GGTCGGAAGGTCAG--AGAGGA----ATGGGATGCGGAGGCAT-----CTACC--GACAACTGACTC------------------ACGAACCAT--TCTTTCTCTCTATATCTCTCTTTCTCTT-CTGATCAGG----CCTCAGG------CTCAGA----------GCATCGAC-------AAAGCCAAGAGTGTTGTAATTATGAGAGTAAGCTC-----------ACTGCCAACAGCACCTCACGGAACAC---------CAGCACTTCTTCATTC-CC---CCCGTGGC-----TTGTCACCT-----CCGACA-ACACGGCACGCTACA-CTTTGTTCGCGC----CTCGTAGTTGATTTGCAT-----ATTACTATATATTATTG--------GGT-------GTGGGAGAAT--
s cb4.chrX              17267390 345 - 21540570 GGTCGTGAGGTCATAGAGAGGAGTGGATCGAATGCAGAGACATTCTCCCTGCC--GACAACTGACTCCTAGGGTCCCCCGCTCAACCGAaccat--tct-------------tcttttcctctgcCTGATCGG---------AGGAGGAAAATGCTGCGAG------AATTGACA-------AAAGCC-----TGTTGTAATTATGAGAGTAAGCTCGGTGGCGGCGGCCG--CGACGG-----ACCAGAACACCACCACCGGCAGCACTTCTTCATTC-TCGTGGTGC--TC-----CTGTCAACGTC---CCGAGA-AACTAGTAGTACACA-TTGTGTTCACGC----CTCGTAGTTGATTTGCATTAACGTTTACTAT--CTGGCGGTGg----aagtggtggtggtgggaaAAC--
i cb4.chrX              C 0 I 797
s caeRem4.Crem_Contig15    99916 303 -  1794024 GGTCGTGAGGTCAT--AGAGGAGTAGATAGAATGCGGAGGCAT---------C--GACAACTGACTC------------------ACGAACCAT--TC------------------TATCTCTG-CTGATCGGG-CCCCCTCAGG------CTCCTGCTCG------ACAAAGCG-------AGAGCC-----TGTTGTAATTATGAGAGTAAGCTC-----------CTC--CACCAG-----CACGGAACAC---------CAGCACTTCTTCATTC-CCGTGCTCACGTC-----CTGTCAGTTTCGGACAGACACAGCGAGTACTCTACACTCTTGTTCATGC----CTCGTAGTTGATTTGCATTAACGTTTACTAT--CTTATTGTGGTTGTTGGTGGCGGCGGTGGGAAAAC--
i caeRem4.Crem_Contig15 C 0 I 23
s caeSp111.Scaffold582    123862 294 +   484378 GGTCGTGAGGTCAG--AGAGGAGTAGATAGAATGCGGAGGCAC---------CGGAACAACTG----------------------ACGAACCATTCTC------------------TATCTCTG-CTGATCGCG----CTTCAGG------CTGCGACTGGCCCA--AGAGAAAA-------GGAGCC-----TGTTGTAATTATGAGAGTTAGTTC-----------TCT--CA-CAT-----CACGGAACAC---------CAGCACTTCTTCATTCGCCGTGCTCGGAGC-----CTGTCAACTT----TCAACG-AAAGAGTAC---ACT-TTCTGTTCACGC----CTCGTAGTTGATTTGCATTTAAGTTTACTATACATTATTGTGGTTGTTGTT---GTGGGTGGGAAAAT--
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3243503 295 -  4147112 GGTCGTGAGGTCAT--AGAGGAGTAGATAGAATGCGGAGGCAC---------C-GAACAACTGACTC------------------ACGAACCAT--TC------------------TATCTCTG-CTGATCGGGGGTCCTCCAGG------CTCCGGCTCaacaaagagagaaaa-------ggagcc-----TGTTGTAATTATGAGAGTAAGCTC-----------TC--------G-----CACGGAACAC---------CAGCACTTCTTCATTC-CCGTGCTCGAGGC-----CTGTCAACTT----TCAACG-GCAGAGTACTCTACA-CTTTGTTCACGC----CTCGTAGTTGATTTGCATTAACGTTTACTATATATTATTGTGGTGGTTGGT------GGTGGGAAAAT--
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18213   247222 295 +   720316 GATCGTGAGGTCAT--AGCGGTGTCGGTAGAATGCGGAGGCTC----GGCCAC--GACAACTGACTCGCAAA-------------CCGAACCAT--TC------------------TATCTTTT-CTGATCT----------AGG------CTCCGCATTG------ACAAAGACCTGGTGTGCGGCC-----TGTTGTAATTAT--GAGCAAGCTG-----------CAC-------G--------GGAACAC---------CAGCACTTCTTCAT---CTGCGCTCGTGGTCGCTGCTGACAGCT-----CCGAGG-TACTACT-CTCCACA-CTTTGTTCACGCGTGGCTCAAAGTTGACTC------AAGATTACTATAAATTGTGGTGACTCGTGGT---CAGCGTGGGAAAAATT
i caeJap4.Scaffold18213 I 191 C 0

a score=-605.000000
s ce10.chrX              2520865 12 + 17718866 GCCTCCCCCCCG
s caeJap4.Scaffold18213   247517  4 +   720316 GGTT--------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3243798  9 -  4147112 I
e cb4.chrX              17267735 797 - 21540570 I
e caeSp111.Scaffold582    124156 10 +   484378 I
e caeRem4.Crem_Contig15   100219 23 -  1794024 I

a score=-4566.000000
s ce10.chrX              2520877  93 + 17718866 GCCAAG------AAAGTCCATAGGTCAGTGTGGGA---AAATGA-ACGAATTTCGATT-----TCCGAGATTTCATGTTCCGTGT---GC---AAGTTTT----------TGTGTC-CGGCGGAG
s caeRem4.Crem_Contig15   100242 105 -  1794024 ACTAAACTCCGTAAAATCCATAGGTCAGCGTGAGAATTGTAGAA-AGAGATTTAGAAT----------------GTGTTCCACGGCA-GCGCAAAGTTTTGATA-GAAGTCGTGTG-CGACGTAG
i caeRem4.Crem_Contig15 I 23 C 0
s caeSp111.Scaffold582    124166 113 +   484378 GCTGAC------AAAGTCCGTAGGTCAGCGTGTGAATCAAGATATGCGGTTTTCGGATGTAagtct--gtgtgtgtgttccACGGCGTGC---ATGTTCTGATAGGAAGACGTGTG-CGACGTAG
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3243807 102 -  4147112 AATAACA-----AAAGTCCATTGGTCGGCGTGGGA----------GCAGATTTCGAATCTCTGTC----TATGCGTGTTCCACGGCAAGC---AAGTTTTGATA-GAAGACGTGAGCCAATGTAG
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18213   247521  86 +   720316 ----------ATAAAGTTCATAATTCA---CAGAaactgaattt-aaaaaattcacac-------cAAGCCACTATgtattgtga--------aatttttattt------tactcG-CGAAG---
i caeJap4.Scaffold18213 C 0 I 36
e cb4.chrX              17267735 797 - 21540570 I

a score=38368.000000
s ce10.chrX              2520970 274 + 17718866 GCGTTTTA-GGATAAATGACATATGTATGCGTCCCCAGTGG-----------TTTTGGTACTAAA---------ATGCAGCAATGAGCA---CAC--ACAT----TCACATATCT---TGAAATAGTTGTGCAAGATAGATT--T----TCGAAA-------------AAAAAAAATCAATG--------------------------AG-----GAAATTGTAAACAACTCGAGTAAGAACATTGGTAATGAGAC-AAAGAAT--AGAAGCCGTGGGATGATCAGTAGTTCTTTTTTCTTGCTTGACAAT----AGATT--TCATGTATATTTCATAGTT-TTCTTTCCCTGAACTGGGAAGTTCT-----------------
s cb4.chrX              17268532 220 - 21540570 gcGTTTCA-GGATAAATGACATATGTACGTGTCCCCAGTGG--------------------CACG---------AACATATCTTGAGCA---CAC-----------------------------ATCCGGCAGATATAAAGT--CAAAATT-----------------AGAGTAAAAAGAGG--------TCGGGTCTTCATTGTTT-CTGTAAGGGAAGAGTAAACAAC---------AACATTGGTAATGTGGA-AGAGAAT--------AATGGTGGGGAGAGTAGCTCT----------------------AAATTTTTCatgagtcttt------------ttttttg---ccaagattt-------------------
i cb4.chrX              I 797 I 5
s caeRem4.Crem_Contig15   100347 321 -  1794024 GCGTTTTA-GGATAAATGACATATGCATGCGTCCCCTGTGG-----------ATTCGGTACTAAA---------AACCAGCAATGAGCA---CATTCACATTCG-ATGCAGAGCT-TGtccgaaattcgaaaaaaaagaagt--tgaaattgaaggaaaaccattggaagaaaaaaaagaagaagctatTTTTGTTTACCATTGTTT-CT-----GAAAGAGTAAACAACTCTAATAAGAACATTGGTAATGAGAA-GAATAATGGAAAAGGAGTGGGATGGGTAGTAGTTCT--TTCTTAGAATAACGAATAAGAAATCCGTTATGAATATTTTATAATC----GTTCTTTA---TGAGAACTT-------------------
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    124279 293 +   484378 GCGTTTTA-GGATAAATGACATATGTATGCGTCCCCAGTGG-----------TTTTGGTACTAAA---------AAGCAGCAATGAGCA---CATTCACATTCAACCACAGATCCCAgcagaaaattcg--aaaaatgaagt--cagaattgaag--------------aaaaaggctaAGGAAGCTATACTTGTTTACTATTGTTTCCT-----TGAAGGGTAAACAACTCACATAAGAACATTGGTAATGAGAA-GAATAAT------------GGAAACCGAGTggcttt---ttctcatttaacaaa----aaaccacTAGTGAATATTCAATGATT----GTTCTCTG---CTGAAAGTTCT-----------------
i caeSp111.Scaffold582  C 0 I 13
s caePb3.Scfld02_0       3243909 266 -  4147112 GCGTTTTA-GGATAAATGACATATGTATGTGTCCCCAGTGG-----------TTTCGGTACTAAA---------AACCAGCAATGAGCA---CATTCACAT----CCACAGA----AAAAGGGTATT---------TGAAgt--cagaattgaag-------------aaaaaagactggAGCAGCTA-----------TATTGTTT-CT-----GGAAGGGTAAACAACTCCCATAAGAACATTGGTAATGAGTA-GAATAAA------------GGATGGTCAGTACCTCT---TTTAActataacaaa----aaaac-cttctgAATATTTCATAGAT----GTTTGCTA---TAGGAAGTTCT-----------------
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18213   247643 287 +   720316 ACGCTTTAGGGATAAATGACATATGTTTGCGTCCCTGGTGAGTTTCGACTCATTCTGAAACCAAAGAAGTGGGCAGTAAGCAGTGAGCAGTGCACTGATGA----GCACATTTCA----GGACAACGCGGAAAAAACGGAATAATGGGACCGAAA-------------AAGAAA----------------------------------CT-----GG-GTAGTAAACAAC--AAACAAGTAAATAAGTGAAGGGACTGAATGAC----------TAATATGGGAAGAA-----------------AACAAT----GGGTATCTTGTAAATTTTTCATAGTTATTTGTTCTTTT---CAAAGGGAACTAGGAACTGGGTAGCACT
i caeJap4.Scaffold18213 I 36 C 0

a score=-9677.000000
s ce10.chrX              2521244 41 + 17718866 AGTATTATAGAATAACGTTTTTTTTTTCCTCAAGATTACCC
s cb4.chrX              17268757 31 - 21540570 aatagaataaaaagA-----TTTGCGTAACCAAGGA-----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15   100673 26 -  1794024 ATCAGTATGAAAA----------ATGTCATCAAGAG-----
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    124585 10 +   484378 AACGatagaa-------------------------------
i caeSp111.Scaffold582  I 13 C 0
s caeJap4.Scaffold18213   247930 23 +   720316 AGGAGCAGAG----------TTTCTTTAATTTC--------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3244175 22 -  4147112 I

a score=38741.000000
s ce10.chrX              2521285 190 + 17718866 GCAAAAAAGCCTT-GATGAAAGAAAGTCAATTGAATTTGATGGGAATTTGAaaaaaaagagaaaagtg--aaa-aaag-gataagagaa--gaaaTGGCATGCAAGCCCGAGAGGTTCTCATGGACAGATTAACG------------TGAAAAACGTTTCAAATGTTTGAAACCTTTCAGGGAAAATGTGAGTAATTGATAAAAAAAGA
s cb4.chrX              17268788 117 - 21540570 ---------------------GGAGGCCAATTGAATTTaa----------------------------------------acgaaaagaa-aa-----------------tgtAGTTCCCATGGGCAGATTAGGGAGAAAAAGCATCGG--AAACGTTTCAAACGTTTCAAAC-----------TAAATgggtaattaaaaaaaagaaa
i cb4.chrX              C 0 I 86
s caeRem4.Crem_Contig15   100699 143 -  1794024 -----------------GAATGGAGGTCAattcaatttgaga----------aaaaaagtgaaaaga-------gaag-gatgagaagaa-aaaaagaaa--tgca---gGGTAGTTCTCATGGGCAGATTAACg------------tg--aaacatttcaaacgtttcaaac-----------aaaatgagtaattgaaaaaaagaga
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    124595 161 +   484378 acaaaatattc------agatgGAGGTCAATTCGATTTGAga------tggagaaaaagtgaaaaga-------gatg-gataagagaaaggaaaaaacacTTGAA---GTGTAGTTCTCATGGGCAGATTAACG------------TG--AAACATTTCAAACGTTTCAAAC-----------AAAATGggtaattgaaaaagaagga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3244197 163 -  4147112 gaaaaaaattc------agatggaGGTCAATTcactttgaga--------aaataaaagtgaaaaaaa--aaccgatg-gataagagaaa-gaaaaaacactcGAA---GGGTAGTTCTCATGGACAGATTAACg------------tg--aaacatttcaaacgtttcaaac-----------aaaatgggtaattgaaaaagagaga
i caePb3.Scfld02_0      I 22 I 318
s caeJap4.Scaffold18213   247953 144 +   720316 ----AACCTTCTTGGAAAAGTGgggatt--ttgtttttaatg--------gaaaaaatgggaaacgcGTTAGGTGATGTGATGTGAGCaa-aagaaa-----taca--------------------aaatacaac------------tg--aaaattttcaaatgggaaaaaa-----------acggtgagtaattaaaaaaaaagga
i caeJap4.Scaffold18213 C 0 C 0

a score=-4496.000000
s ce10.chrX              2521475 43 + 17718866 -------ACGTAGGGGGGGGGGGGGGGGGCATA-GTGAAATAAAACATTCA---
s caeRem4.Crem_Contig15   100843 42 -  1794024 ---------aaacaAGAAACGGAGGGGGTCTCACTCAAAATTGGATACGCA---
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    124756 36 +   484378 -------atgaactagaagtgatggg--------ttggaataggaaaaaga---
i caeSp111.Scaffold582  C 0 I 9
s caeJap4.Scaffold18213   248097 46 +   720316 ctaCATTCTGaggcgagagagagaga--------gagaaattcGACAGATTTTA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3244360 318 -  4147112 I
e cb4.chrX              17268905 86 - 21540570 I

a score=846.000000
s ce10.chrX              2521518 3 + 17718866 AGA
s caeSp111.Scaffold582    124801 3 +   484378 aga
i caeSp111.Scaffold582  I 9 C 0
s caeJap4.Scaffold18213   248143 3 +   720316 AGA
i caeJap4.Scaffold18213 C 0 I 38
e caePb3.Scfld02_0       3244360 318 -  4147112 I
e cb4.chrX              17268905 86 - 21540570 I
e caeRem4.Crem_Contig15   100885 0 -  1794024 C

a score=409.000000
s ce10.chrX              2521521 9 + 17718866 AATAAAGTT
s caeSp111.Scaffold582    124804 9 +   484378 aagatAGTT
i caeSp111.Scaffold582  C 0 I 39
e caePb3.Scfld02_0       3244360 318 -  4147112 I
e caeJap4.Scaffold18213   248146 38 +   720316 I
e cb4.chrX              17268905 86 - 21540570 I
e caeRem4.Crem_Contig15   100885 0 -  1794024 C

a score=0.000000
s ce10.chrX              2521530 710 + 17718866  
e caePb3.Scfld02_0       3244360 318 -  4147112 I
e caeJap4.Scaffold18213   248146  38 +   720316 I
e cb4.chrX              17268905  86 - 21540570 I
e caeSp111.Scaffold582    124813  39 +   484378 I
e caeRem4.Crem_Contig15   100885   0 -  1794024 C

a score=1164.000000
s ce10.chrX              2522240 32 + 17718866 AAATAAAACCCAAAATCTTCGAACTTGTTCTA
s caeRem4.Crem_Contig15   100885 32 -  1794024 AAAATAAGCTTGAAAacttctaacttttttca
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3244360 318 -  4147112 I
e caeJap4.Scaffold18213   248146 38 +   720316 I
e cb4.chrX              17268905 86 - 21540570 I
e caeSp111.Scaffold582    124813 39 +   484378 I

a score=-1393.000000
s ce10.chrX              2522272 42 + 17718866 AAA-------------GTATGTTGCAACTTGTTTACTAAGACTGCATGACTGCTT
s caeRem4.Crem_Contig15   100917 32 -  1794024 aaatctgatcATAGGCGAATGTTTCAAATTGG-----------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3244678 34 -  4147112 AAA-------------GAATGTTGCAATCTAGACCCCAAAAATCCTA--------
i caePb3.Scfld02_0      I 318 I 1
e caeJap4.Scaffold18213   248146 38 +   720316 I
e cb4.chrX              17268905 86 - 21540570 I
e caeSp111.Scaffold582    124813 39 +   484378 I

a score=3447.000000
s ce10.chrX              2522314 9 + 17718866 AAGCGCAAA
s caeRem4.Crem_Contig15   100949 9 -  1794024 AAGCCTAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    124852 9 +   484378 AAGCTCAAA
i caeSp111.Scaffold582  I 39 C 0
s caePb3.Scfld02_0       3244713 9 -  4147112 AAGCTCAGA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213   248146 38 +   720316 I
e cb4.chrX              17268905 86 - 21540570 I

a score=10846.000000
s ce10.chrX              2522323 12 + 17718866 ACCCAAACAATA
s cb4.chrX              17268991 12 - 21540570 ACCCAAACAATG
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig15   100958 12 -  1794024 ACCCAAACAATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    124861 12 +   484378 ACCCAAACAATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3244722 12 -  4147112 ACCCAAACAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248146 38 +   720316 I

a score=317502.000000
s ce10.chrX              2522335 552 + 17718866  
s cb4.chrX              17269003 586 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   100970 580 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    124873 566 +   484378  
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3244734 563 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   248184 601 +   720316  
i caeJap4.Scaffold18213 I 38 C 0

a score=-1712.000000
s ce10.chrX              2522887 19 + 17718866 GCATCGGAGACTGATGTGA
s cb4.chrX              17269589 15 - 21540570 AGATGGGAATGGGAT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   101550 15 -  1794024 GCATCGGAGTCTAGC----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3245297 15 -  4147112 GCATCGAAACTTTGT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   248785  9 +   720316 --ACCAGAAAG--------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    125439 10 +   484378 I

a score=8266.000000
s ce10.chrX              2522906 44 + 17718866 GGCTGTAATCGAAAAT-----AGGTTGCAAGGTTGC--A-------------AAAATGCG------ATAT
s cb4.chrX              17269604 45 - 21540570 --CTGTAATCGAAATA-------------AAGTTGCATAACATGCGGT----AAAACGAG------TTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   101565 50 -  1794024 --CTGTAATCGAAATA----AAAGT----AAGTTGC--AACATA--------AAAACTCGGCACTTTTAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    125449 42 +   484378 GCCTGTAATCGAAATA-----AAGT----ATGTTGC--AAC-----------cgaaaata------ttat
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3245312 39 -  4147112 --CTGTAATCGAAATA-----AAGT----ATGTTGC--aa------------agaaaata------ttat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   248794 58 +   720316 AGCTGTAATCGAAATGGCAGGAAGA----AGGATAA--GAAGAAGGGTGGCGAAAAGATG------ATGT
i caeJap4.Scaffold18213 C 0 I 222

a score=6077.000000
s ce10.chrX              2522950 10 + 17718866 TATTAGGTGT
s cb4.chrX              17269649 10 - 21540570 TATTAGGTAT
i cb4.chrX              C 0 I 943
s caeRem4.Crem_Contig15   101615 10 -  1794024 TATTAGGTAG
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    125491 10 +   484378 tattagACGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245351 10 -  4147112 tattagATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248852 222 +   720316 I

a score=-28732.000000
s ce10.chrX              2522960 384 + 17718866 -------ATATGTGTTTAGTGCGTTTTAGGATGCACAGAATTTAAACTCAATTTTGA----AAGTGT----AGGGGAAATTTGAATAGTTGGAAAATGTTCATAAAGTGCAGGATAGAGACCAGGAGCAATTGCCAAAACTTTATTTTTCAAGAATTTTTGGGTCTTAAAACGGAAAGTCTTAGATTCCGGTACTCCTTTAAACGGTTAAAAAA------AAACTGAAAAATCAAGATGACTGGCACAGACCCCAGAAACTTCTCCTAACAAATTTTATTATCACTATTTAAAAAAAATATTGAGTTCAAACACTGCTTTCATAATACTTTCAGAAAAAAAAAACTTATGAACTTCAATTCTAAGGTAGTGCGCAAAAAGCCATATATATCCCTAGTACATAGTA
s caeRem4.Crem_Contig15   101629 186 -  1794024 -------ATATAAGTT-------------------CCGAATTCCAATTCGATTTCTA----GAATG-----TATGCACTTATG----TTGGTTATAGGCACATTTTGTG---------------------------------------------------------------------------------------TAACAAACAGAGAACACACTATCCCATCTGAGGGATTG------------------------------------------------CtgtttctattgaaaaaagggTAT--------------AGAAACATctcaaaagcaaaaaaacct---------------------------AGGTGTGTATTTATTTCAGTACTAGTC----
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    125501 221 +   484378 CCTTTCAAACGAAGTT-------------------ccgaatttcaattcaatttttattgagaatGAGTTTCATGGAATTCTA----GTTACAAAATGATGACTACGTAT----------------------------------CGCTTCGAA---------------------------------TCTgat-catttctaaaaaccaatcaaa------aaagtgtacATTTG------------------------------------------------TAAAATATAAGAAAGAAGCAAAAT--------------AGtaacatcaaaaaatcatgagaACATCAAACA---------------------AGACGAGTTCTCGTTTGACTACTAGTC----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245361 207 -  4147112 C--TCCAAACCGAGTT-------------------Ccgaatttctattcaattttca--------------agtagCATTTT--------------TGAATAGTCTGTAC----------------------------------TTTTGCAA--------------------------------------------taccaaaatgaaaataga------agctgggaaagcta------------------------------------------------caaaactgaaaaaacaagctaaaccta-----------gataaaaccataaaacatcgaaaacaagaaaaagaaactggagAAGCATT--GGAGGTAAGCTCTCATTTCACTACTAGTC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248852 222 +   720316 I
e cb4.chrX              17269659 943 - 21540570 I

a score=14509.000000
s ce10.chrX              2523344 61 + 17718866 AAATTGGCAGGTTCAACATTAT-----------CTGACATAGATGTATTGTTTTTAGTGCAACAACAAAAAG---
s cb4.chrX              17270602 60 - 21540570 AAATTGG------AGGTTTCTC------CACTGCAGACAAAGATGTATCGTTTTTAGTACAAAGGTAGCAAA---
i cb4.chrX              I 943 I 15
s caeRem4.Crem_Contig15   101815 70 -  1794024 AAATTGGTACGTTTGGTTTTGTTTCAGGCGATGCTGACAAAGATATATTGTTTTTAGTGCAACG--AGCAAA---
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    125722 53 +   484378 AAATTGTTAGGTTTG----TTT--------CTGCTGACAATGATGTATTGTTTTTAGT----------CGAGAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245568 65 -  4147112 AAATTGTTAGGTTCGGTTTTCT--------CGGCTGACACTGATATATTGTTTTTAGTACAACA--AGCAAGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248852 222 +   720316 I

a score=2122.000000
s ce10.chrX              2523405 24 + 17718866 GTGTAGTAGTCCGGCTTTGTG-----------TGA
s caeRem4.Crem_Contig15   101887 24 -  1794024 GTAGACTAGCTAAGCTGCTCG-----------TGA
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    125775 24 +   484378 GTAGAAAAGCAAAGCTGCGTG-----------TGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245633 34 -  4147112 GTA-CAAAGCTAAGCTCCGtgtgaaaaatgtatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248852 222 +   720316 I
e cb4.chrX              17270662 15 - 21540570 I

a score=21396.000000
s ce10.chrX              2523429 64 + 17718866 AAAATGCGAAATCTTTGTAATACATAAGACACCATGATTCTAACCGGAGGAAGGGGAGGGGA-GG
s cb4.chrX              17270677 49 - 21540570 AAAATGCACAATCTTTGTAATATATAAAACCGCTTGAAGCGA-------------GGGCAGT---
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15   101911 52 -  1794024 AAAATGCAGAATCTTTGTAATACATAAGATGGCTTGATCCTA-------------GAGAAGTGCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    125799 51 +   484378 AAAATGCACAATCTTTGTAATACATAAAACAGCTTGATCTTC-------------GCCAGGA-GG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245667 51 -  4147112 aaaatgCAGAATCTTTGTAATACATAAAACCGCTTGATCTTA-------------GTCTAGG-AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   248852 222 +   720316 I

a score=34377.000000
s ce10.chrX              2523493 53 + 17718866 ATT---TTGTGGCGAGAC-GGGTGGCACATGGAAACACTTTCGGT---ATTTAACGAGCC
s cb4.chrX              17270726 41 - 21540570 -------------------GGGTGGCACATGGAAACACTTTCGGTCGATTTTAACGatcc
i cb4.chrX              C 0 I 297
s caeRem4.Crem_Contig15   101963 53 -  1794024 ATT---TTGTGGTGAGAC-GGGTAGCACATGGAAACACTTCCAGT---GTTTTACGAGCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    125850 49 +   484378 GCT---TTGTGG-----CTTTGAGGCACATGGAAACACTTTCGAT---GGTTAACGAGCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245718 54 -  4147112 GCT---TTGTGGCAAGCCGGGAGGGCACATGGAAACACTTTCGGT---GTTTAACGAGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   249074 57 +   720316 ATTTAGTTGTGGCATGGGTGGCAGGCACATGGAAGCACTTTCGGT---ATTTAACGAGCC
i caeJap4.Scaffold18213 I 222 C 0

a score=910.000000
s ce10.chrX              2523546 1 + 17718866 A
s caeRem4.Crem_Contig15   102016 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    125899 1 +   484378 A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245772 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   249131 1 +   720316 A
i caeJap4.Scaffold18213 C 0 I 945
e cb4.chrX              17270767 297 - 21540570 I

a score=-1980.000000
s ce10.chrX              2523547 2 + 17718866 C-C
s caeRem4.Crem_Contig15   102017 2 -  1794024 CC-
i caeRem4.Crem_Contig15 C 0 I 25
s caeSp111.Scaffold582    125900 1 +   484378 C--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245773 1 -  4147112 C--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I
e cb4.chrX              17270767 297 - 21540570 I

a score=597.000000
s ce10.chrX              2523549 16 + 17718866 CATCGCCGCTACCGTT--
s caeSp111.Scaffold582    125901 16 +   484378 CGCTGCCAACACGGTT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245774 18 -  4147112 CACTTCCCTCACTGTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I
e cb4.chrX              17270767 297 - 21540570 I
e caeRem4.Crem_Contig15   102019 25 -  1794024 I

a score=-11301.000000
s ce10.chrX              2523565  89 + 17718866 -----TAGACGGAAAG----GCTGGTTTCA------------------GGAAAATATAGATTTTTTGGGAAAATTTACCTGTGCAAAAAATGTATCCC---TTTGTTA-----------TAttt---------cgttac
s caeRem4.Crem_Contig15   102044 111 -  1794024 TTGAAGAAAATGCAGGATAAGTTGAAATGTTTGTGACAGAACTAaacggaaaaatagaggatatTTTG--------ACATGGAAAAGTACCTGATGACGTTTTCTTGA-----------TGTTT---------TGTTAC
i caeRem4.Crem_Contig15 I 25 I 86
s caeSp111.Scaffold582    125917  85 +   484378 ----AAAAACTATAGG------TGGATTGA------------------GAGGAGAAGATCATA-----------------ACATAGATAACATGCAACAGGTTGGCTAAGCGGATAAGTGGTTC---------GATTGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245792 100 -  4147112 ----AAAAACTATAGG------TGAATCTT------------------GAGAAGTTGATAATATTT-----------CATGAACTAATACCTGATTACATTTGGATGCAACAAAAGAATCATGCCACTGAGTATATTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I
e cb4.chrX              17270767 297 - 21540570 I

a score=-453.000000
s ce10.chrX              2523654 98 + 17718866 gaaattcgttcaattgagcacatttttggtttatgcgttcaaaatACCTTGAAAGTACCATCTGGAGAGTTTTAGAAGACACTGTCAATTAAAAAAAC
s caeSp111.Scaffold582    126002 52 +   484378 ----------CACCTGATGAcgtttt---cttattctttttgtatACATTCAGAA-------------------------ACTGGCAATT--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245892 60 -  4147112 ----------CACCTGATGACGCTTT---CCTAATCTTTACGTTAATCGTGAATA-------------------------CCTAACAATTAacgaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I
e cb4.chrX              17270767 297 - 21540570 I
e caeRem4.Crem_Contig15   102155 86 -  1794024 I

a score=-10611.000000
s ce10.chrX              2523752 116 + 17718866 AAAGGAGCAA------AGAAATAAATGCA--TAT-------------TACAACAGTTGGTAGGTGAACGTA--------------GAATAGGATAA-------------TGCTG---------------------------------TACTTGTCAAAATAAATAGATGTAGAGGATGTAACCAAAGAATAATATGA
s caeRem4.Crem_Contig15   102241 129 -  1794024 AATGGAGCAATTGACCAACAGTATGCTCA-------------ACAGCTCCCACAATG------------AGAGTCACTT------ATCGAGAGAAA-------------TGTTgcaaaaacagga--aaagta--------------TATCTAATTTGATACATACATATCGTGTACCT-------GAATGTTATG-
i caeRem4.Crem_Contig15 I 86 C 0
s caeSp111.Scaffold582    126054 145 +   484378 -AAGAGACAATGGATGAGCAAAAAATGCATGTGTCAATGGAAACTG-TACAACAAtgttctgaagaaaaagagtcagttgctttcaaaaagaaaaatgatccTTATTTGTGTTG-------------AAAGGA-------------CTATACATCAAGT----------------ACCT-------GAACACTATG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3245952 160 -  4147112 caaagaaaaatataagagCACTAAATGCA--TGTTAGGAAGAACTG-TACAACTATATTtgtatgaaaaag--------------aaagagagtcA-----------CATGTTG-AAGaacacgaaaaaagaaaagcgatCCTAATTTATTCGATGTGTACTATACACATCAAGTACCT-------GAATGTTATG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I
e cb4.chrX              17270767 297 - 21540570 I

a score=16788.000000
s ce10.chrX              2523868 85 + 17718866 GAA--------TTTTAAAATA--TTCAAATAAAGTTGCTTGAGGTA-GCCACC--AAGCGGAACCAAATACACGTGAGAACTCCGCCGCCACCACTTG-----
s cb4.chrX              17271064 92 - 21540570 GAATGTTATATTATTATAAAA--CTTGGA------CATTTGTCCCA-AAAGAG--AATAGAAAATAAATACACGTGAGAACTCCTCGGGTGGGCTTCGCCGTA
i cb4.chrX              I 297 C 0
s caeRem4.Crem_Contig15   102370 71 -  1794024 -----------TTTTATAAAA--CTTT--------CACTTGGAATA-GCCAAG--AAT-GGAAATAAATACACGTGAGAACTCCGC--GTGAGGCTCG-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    126199 70 +   484378 -----------TTTTATATaactttct--------ctctcgaaaTAGGCcaag--aag-gaaaataaatACACGTGAGAACTCCGC------GGCTCG-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246112 69 -  4147112 -----------TTTTATataa--tttt--------ctcttgaaata-gccaagaaaaa-gaaaataaatacaCGTGAGAACTCCGC------GGCTCG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   249132 945 +   720316 I

a score=141682.000000
s ce10.chrX              2523953 285 + 17718866 GCTCAATTACGATCGAGTTTCAATCATTACGTGA-AGGAAAAGAGACACATACGGATGT------ATAAATATCC-TTCTTGGGAATATGTACGCATAAATGTTTGTACAC--ACTTTGCAAGCATAATAAGAAACTTGTAATTGGAGA--GAA-CTTTTTCCGAATTGG----TTTCTTCCACGGCG-------------------------------AACG-AGGTGGTGGTGGG---------------AGGAGACAGTGCATTGACGTATCAATGGCAATTACTCACCG----AGGA--GTACAAGCAAACTA-GGTGGTC--AGAGGGACATAAAG---ACAAAAGACTATTAATT
s cb4.chrX              17271156 291 - 21540570 GCTCAATTACGATCGAGTTTCAATCATTACGACG-CGGGATGCAAAGACACACGGATGT------ATAAATATCCCTTTCTTTGGGTGTATATGCATAAATGTTTGTACACATACTTTGCAAGCAT------AAGTTGGTAATTGGAGA--GAGAACTTTTGAGAA--------GCTCCGGAAAGCTCAGAAAGAGCTCGccaggaaaaaa-----------g-agaaaaagaaaag-------------acag----------TGTGACATATCAATAGCTATTACTCAGCGGTACGCGGGTGTAAAAGCAAGCTA-GGTGGTC--AGAAC------AAG---ACAAAAGGCAATTAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   102441 322 -  1794024 GCTCAATTACGATCGAGTTTCAATCATTACGG---------GGAAAGACATACGGATGT------ATAAATATCCTTTCTTGGGAATATGTATGCATAAATGTTTGTACACACACTTTGCAAATATAATAAGAATTTGGTAATTGGAGA--GAG---CTTTACGAATTGG----ATTCtaaaacaatgataaagagtaatatagaaaaagaagcaga--aata-agaaaaagaagaggatttCGGAAGGTACAAGAAATCGTGTGGTGACATATCAATGGCAATTACTCAGTG---CACGG--GTACAAGCGAGCTA-GGTGGCCGAAggac------aagaaaacaaaaggtCATTAATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    126269 310 +   484378 GCTCAATTACGATCGAGTTTCAATCATTACGGGG-------GGCAAGACATACGGATGT------ATAAATATCCTTTCTTGGGAATATGTATGCATAAATGTTTGTACAC--ACTTTGCAAGCATAATAAGAATTTGGTAATTGGAGA--GAT---CGTTTCCAATTGGATTCTCTCTaaaagaatgatgaggagtaat---gaaaaaagagagga-aaagg-agggagagaaggg--------------gaggagaCAGTGCGATGACATATCAATGGCAATTACTCAGTG---CACGA--GTACAAGCAAGCTA-GGTGGTC--AGAAAG-CATTAAG---ACAAAAGGTCATTAATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246181 304 -  4147112 GCTCAATTACGATCGAGTTTCAATCATTACGGGG-------GGAAAGACATACGGATGT------ATGAATATCCTTTCTTGGGAATATGTATGCATAAATGTTTGTACAC--ACTTTGCAAGCATAATAAGAAGTTGGTAATTGGAGA--GAA---GTTTCCGAATTAG--TTTTTCTAAAAGAATGATGAGGAGCaatacaggaaaaaaagagga-ggaggcagaaagagaggag--------------gaggagactGTGCATTGACATATCAATGGCAATTACTCAGTG---TACGA--GTACAAGCAAGCTA-GGTGGTC--AG---------AAG---ACAAAAGGCCATTAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   250077 282 +   720316 GCTAATTTACGATCGAGTTTCAATTATTATGCGGTCGTCGCGGGCGGGCGGATGGACGTATAAGAATAAGTATCC-AACTTGAGAACATGTACCTAAGAACGGATGt--------tttagaa-------aataaatatgtaaCTGGACACTTAA---CTATTCGaatgga--------------------------------aaaagaaaatgtgtaGGAATA-AGAAAGAATACAT--------------ATAGACTTTCTGCATTGACATATCAATAGCAATTATTCTGCG---AGCGGAGAAAGAAATATACCAGGGTGGCC--AATTGG-----AAG---ACAAAAGAGCATTATTT
i caeJap4.Scaffold18213 I 945 I 526

a score=8686.000000
s ce10.chrX              2524238 40 + 17718866 CC-GGTCAAATGACTAGAT---ATTAGAACGGTAATGCGAAAAA
s cb4.chrX              17271447 38 - 21540570 CCGGGTCAGACGACTGGAA------TGAACGGTAATAGAGGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   102763 43 -  1794024 CC-GGTCAGACGACTGGTGGCTTTTCGAACAGTAATAAGCAAGA
i caeRem4.Crem_Contig15 C 0 I 167
s caeSp111.Scaffold582    126579 39 +   484378 CC-GGTCAAACGACTGGAT---CAGCGAACAGTACCGAATAAT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246485 39 -  4147112 CC-GGTCAAACGGCTTGAT---TTTCGAACGGTATGACGGGAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I

a score=-30155.000000
s ce10.chrX              2524278 173 + 17718866 ------------------------------------------AAAACGCTTGGT------------AGATTGGAAATAAACT-----AATTGGGAGGTGTA----TAAAAAT------------CAATAACTAG---------ACTGTTTGGTTCA----------TTGG--TGGCACAAAAATATACAAATAATGTAATTAAATCTTTATA--AAAATG-----CTCAATTTCAAAT----TCTAAATCGGCAAAACGTCTTGACCACCTGTGATCTTT-
s cb4.chrX              17271485 224 - 21540570 TTGGCCCGtgtgtttgattttttgggttga--------GCTTAGTAGATGTGGT-------------AATGAATAATGGAAGAAGCAAATTGGGAAGTATC----TAGAGCCACCTGTTTAGTCCAGTGGTAAACGGctcataaatttttcaaaagaga-------tTAG-----------AAtaaatttcgatttaaaat--atctcaaaaatgaaatc-----ctcaacttgaaat----ttttga---ataaaaatgttttaggaTTTCATGTACTGt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    126618 190 +   484378 -----------GCTCGATT-----GAATGAGAGCAagcatttaaaaaatttagtgtGTACGAAGACAAATTAATGATGGTTAttgtaatttttga----------tgaaaac--------------gtATTGAA-------TTACTCTCTTGGGTAGTA--TCATTTTGG--------------ACACCTCcattt----------ttgatg--gaaatt-----caaaaaagaagat-------aga---aaacaataatatatatatattttttttta-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246524 218 -  4147112 -----------GCTCAAT--------ATGA--------ATTAGACAAGGTTGGT-------AAGGCCAATTAAAAAAGagt------atttttgaatcataGTCCTGAAGACA-----TGAATATGGTATAGAA---------AATGTCTTATACAGAAATTCGCCTTGGTAAGGATCAAAACTACACCACCTGTT-CATT--GTctcaatg--aatattttataCGTAATTGGAGACCAGCGCAAGA---ACTAAACGTTCTTGGaatatttaatttta-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I
e caeRem4.Crem_Contig15   102806 167 -  1794024 I

a score=-25232.000000
s ce10.chrX              2524451 63 + 17718866 -------------------AAGTTATTTATTAAA---TTGTTCA----AAACGCCTAGATGGCTTTGTTTTGAAATTTAAC--------AAAATTAG
s cb4.chrX              17271709 85 - 21540570 -agctgttttttttccgatgtGCTA-CCAGCAAA---TTATTCGCCAAATCAGcc-----gtattttcttt--aattAAAGCCCACCCTAacattaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   102973 76 -  1794024 AAATTA----------GACACGAca-caattcaaattttattcacACAGACAGCCtgtgagaattttt-------caaaaatttgc---aaaattag
i caeRem4.Crem_Contig15 I 167 I 48
s caeSp111.Scaffold582    126808 53 +   484378 ----------------aatacgaca------agaatgtttttcaaagtaaAA--CTGAATGAATTATT--T--AACTGAAT----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246742 42 -  4147112 ----------------aaattga----------------tttCACTCTAAAGTCTTGAAGGGTTTG-------AAATAAAC----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I

a score=-8790.000000
s ce10.chrX              2524514  68 + 17718866 TGTC----------AAGCTTTTCAATT-GTAAAAAAAAATT-----------------------------------------ATTCATCTAATTTTTTCTAAATTCAACACTTCCCAATC
s cb4.chrX              17271794 111 - 21540570 ---ctttgagctcaattatctcgaatt-ttgtagaagatatcaacaCCTTGCCAACTAACacattatttatcataacatcacaatAATTTAAT-----CAGTTTGCACCATTTTAATGTC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    126861  60 +   484378 ---------------TGATCTCCATTTGTACTATAAAAGCT-----------------------------------------GATAGTGAAAT----GAAGTATTCATTATTCCCtcatc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246784  63 -  4147112 --------------AAGAACCccaaat-taagaaaaaacat-----------------------------------------aaaaatgaaat-atggCGATACCGATAAATCCCGTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I
e caeRem4.Crem_Contig15   103049  48 -  1794024 I

a score=41716.000000
s ce10.chrX              2524582 301 + 17718866 --------------------------------------------------------------------------TTTA----------AAAAATAATTTAACTCGCACACACAGTGG-CAGAGGCAAATAAAAAAAATTT------GTTTAGT------ACAC-ATAACTCCG------CAATTGATACACTATACTAAATACAAGTAA--------GAAATAGACACCGGAGACG----------CGTGA------AGGGTGAGGTGAACTGTTGCGTAA-CTGGCAGCAGGCCTGACCGGACCATCCTGACATATGAT--------ACGCCTACCTATC----TGAGCGAAAGCTACCTAATGCTC--------AATGCGCATC-CTCACGAATGGAGTTATGTCATAAACCAAAAGTTCACG--AGTTATGGACCAGGAAATAAGGAAGA------
s cb4.chrX              17271905 410 - 21540570 TTACatggaaatcgagataattcagcttgAAGCTAATTGTTTGAGTGGGCTCCCACAAGAGATAATAC-----AGTAGTTtgtattacaaaaa------aatttaggagcTCACTatctaaaaactttcaaaaaacaaatagcT--ATCGATT------ATAATACGACCTCCACTAACAAAAAGATACACTATAC-----ATAAGTAAACTGCTAGGAAATTGACACTCGAGACGACGTTCGACTCGTGTCCGAGGGAAGAGAGGTGAACTGTTGCGTAATTGGGCAGCAGGCGT-ACCGGACCATCCGGACATACGATACAGACACACACCCACTCAACAAATCGAGC-----TTACCTAATGCACCTCCCGAAAGAGCACATC-TTTCT-ACC----TTACGTCATCCAACAGAAGTTCgat-------gggaagaagaagaaaacgaag------
i cb4.chrX              C 0 I 918
s caeRem4.Crem_Contig15   103097 283 -  1794024 ---------------------------------------TTTGAGCAG-----------------TAA-----AGCaa----------------------------------------taaaaaccaacaaaaatcgATTAGT-------ATT------ATAA-ATGACTCCT-----CGACAAGATACAATATACGATATACAAGTAAACTGAGAGGAAATTGACACTCGAGACGACG-------CGTGT-----GAGGGAGAGGTGAACTGTTGCGCAA-CGGGCAGCAGACG---ACGGACCATCCGGACATACGAT--------ACGCCCACCTAAC----CAAGC-----TTACCTAATGCAC--------AGTGCGCATC-TTCGC-AC------TACGTCATACACCAGAAGTTCACTCTCTG-ACGGACCAACAAGGATGTAAGA------
i caeRem4.Crem_Contig15 I 48 I 476
s caeSp111.Scaffold582    126921 293 +   484378 ------------------------------------------------------------------aa-----aactt-----------------------ttttcta----------aataaaagaaaaagaaccaACTGACTCAATAGATTTGTTTTACAA-ATGACTGTT------GAGAAGATACACTATACAATATACAAGTAAACTAGGAGGAAACTGACACTCTCGAT------------GTGT------CGAGAGAGGTGAACTGTTGCGCAA-TCGGCAGCAGACG------GACCATCCGGACATATGAT--------ACGCCTGCTTAAC----CGAGC-----TTACCTAATGCAC--------TGTGCGCATC-TTCTCGACC----TTTCGTCATACATCAGAAGTTCATTTTGCGTTAGGACCAACGAGGATGTAGGAGGAGGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3246847 304 -  4147112 ------------------------------------------------------------------AACCtcgaactc----------aaaaa------aacttccaaaaacaataggaataaacaaaaaaaaaacaaat------attgatCCATAAAACAT-CTGACCGTT------TACAAGATACACTATACTATATACAAGTAAACCGAGAGGAAATTGACACTCAAGGT-----------AGGGT------GGAGAGGGATGAACTGTTGCGCAA-TCGGCAGCAGACG------GACCACCCGGACATATGAC--------ACGCTTACCTAAC----GGAGC-----CTACCTAATGCAC--------TGTGCGCATCTTTCCTGACC----TTACGTCATACATGAGAAGTTCAATCCAAGTGATG------GAGGATGTAGGAAT-GGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I

a score=-2196.000000
s ce10.chrX              2524883  2 + 17718866 GC----------------------
s caeSp111.Scaffold582    127214 24 +   484378 GTGAACTTGCAAAAATATGcacat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3247151  4 -  4147112 GCGC--------------------
i caePb3.Scfld02_0      C 0 I 571
e caeJap4.Scaffold18213   250359 526 +   720316 I
e cb4.chrX              17272315 918 - 21540570 I
e caeRem4.Crem_Contig15   103380 476 -  1794024 I

a score=-93.000000
s ce10.chrX              2524885 36 + 17718866 Tggggagggggggggg-------------------ggggggggggTTCCAAGACA
s caeSp111.Scaffold582    127238 53 +   484378 tgaaaaaggaaaagagagaaagaatgcATATGATTAGGTGGGatgttccaaa--a
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3247155 571 -  4147112 I
e caeJap4.Scaffold18213   250359 526 +   720316 I
e cb4.chrX              17272315 918 - 21540570 I
e caeRem4.Crem_Contig15   103380 476 -  1794024 I

a score=2498.000000
s ce10.chrX              2524921 21 + 17718866 CTCGGAA-GAAATGA--------------------------------------TCGACCA
s cb4.chrX              17273233 22 - 21540570 CTCGGAAGGGGATAA--------------------------------------TCGAGCC
i cb4.chrX              I 918 C 0
s caeRem4.Crem_Contig15   103856 18 -  1794024 CTCGGAA-GGAATGA--------------------------------------TCGA---
i caeRem4.Crem_Contig15 I 476 C 0
s caeSp111.Scaffold582    127291 59 +   484378 atcaaac-gGAATGACGAATACATTAGTGAAAGTTgcgaattttaaaattaactTGACCA
i caeSp111.Scaffold582  C 0 I 240
s caePb3.Scfld02_0       3247726 21 -  4147112 CTCGGAA-AGAATGA--------------------------------------TCGACCA
i caePb3.Scfld02_0      I 571 C 0
e caeJap4.Scaffold18213   250359 526 +   720316 I

a score=91.000000
s ce10.chrX              2524942 1 + 17718866 A
s caeSp111.Scaffold582    127590 1 +   484378 A
i caeSp111.Scaffold582  I 240 C 0
e caePb3.Scfld02_0       3247747 0 -  4147112 C
e caeJap4.Scaffold18213   250359 526 +   720316 I
e cb4.chrX              17273255 0 - 21540570 C
e caeRem4.Crem_Contig15   103874 0 -  1794024 C

a score=57014.000000
s ce10.chrX              2524943 76 + 17718866 TTGGCCACTTG-AAATCTGGAACAGACGGCC----CGTTGCGTAACT-----CGTA---CCATAAACAGATGACAAATTGCCGACACAC
s cb4.chrX              17273255 78 - 21540570 --AGCCACTTG-AAATCTGGAACAGACGGCCCGCAGGTTGCGTAACC-----TCTA---CCATAAACAGATGACAAATTGCCGACAAAC
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15   103874 69 -  1794024 ----CCACTTG-AAATCTGGAACAGACGGCT----GGTTGCGTAACC-----CATA---CCATAAACAGATGACAAATTGCCGACA---
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    127591 74 +   484378 TCGACCACTTGAAAATCTGGAACAGAAGGTCT---CGTTGCGTAACC-----AATA---CCCTAAACCGGTGACAAATTGCCGAC----
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3247747 65 -  4147112 -------CTTG-AAATCTGGAACAGAAGGTC----CGTTGCGTAATC-----CATA---CCATAAACGAATGACAAATTGCCGAC----
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18213   250885 81 +   720316 TTACCCACTTC-AAATCTGGAACAGACGGCG----AATTGCGTAACCATAGTTATAAACCCATAAACAAGTGACAAATCACCGACG---
i caeJap4.Scaffold18213 I 526 C 0

a score=0.000000
s ce10.chrX              2525019 16 + 17718866 AAAAACCGATACAACT
e caePb3.Scfld02_0       3247812 10 -  4147112 I
e caeJap4.Scaffold18213   250966  0 +   720316 C
e cb4.chrX              17273333  9 - 21540570 I
e caeSp111.Scaffold582    127665 10 +   484378 I
e caeRem4.Crem_Contig15   103943 11 -  1794024 I

a score=71518.000000
s ce10.chrX              2525035 201 + 17718866 -GAGATGATTATGATGACAGGCGAGAAAAATCGTAG---TCAGCTTCCATCACCGTTGTTTTCG-GTTTTTGACACAAACC----AAAATGACCGCCCTCATCAGTCATCTATAATCCTAT---GGCCGTATGGGAAGAC---GGCCATCAG---------GAAAAAGGAAA--AATAG---TCAAA----CATTTATTTTACAAAAAAAAAGCT-ATGTA--------ACAAAAAAAAACA-A
s cb4.chrX              17273342 207 - 21540570 --GGGATATAATGGTGACAGTCGAGAAGA--TGGAG----------------CTATTGTTTTCGTCTTTTTGTCACC---CCCTTCTCAGGGCCGCCCTCATCAGTCATCTGTAATCCGGGGC-CACCACATGGGATAATCAAAACCAACag---------agagcaaaaaa--atgacaagtcaaacattcattcattttacagaaaacaagCA-AGGCAGCTTTTTTATAcaaaagggag-a
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig15   103954 193 -  1794024 ---GATGAGGATGATGACAGTCGAGAAGA--TGGAGTCGTT-GGTCCCCTCACcgttgtttttg-ctttttgccACA---C----CGAATGACCGCCCTCATCAGTCATCTGTAATCCCACAA-AAGCACATGGGAAGAT-------GTCAT---------GAAACCAAGAA--ATGTC---TCAAA----CATTTATATTACAGAAAAGAAGCA-AGGCAGCTTTTTCAT---------AA-C
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    127675 198 +   484378 -GTGATGGGGATGATGACAGTCGGGAAAA--CCAAA---CC-GATGCCACCAa---tgtttttg-cttttcg-CATA---C----CAAATGGCCGCCCTCATCAGTCATCTGTAATCCTAG---TAGCACATGGGAAGAT-------GTCAT---------GAAACCAAGAAATAAGAC---TCAAA----CATTTATATTACAGAAAACAAGCG-AGGCAGCTTTTTAATAACGGAAAAAACG
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3247822 199 -  4147112 -GTGATGAGTATGATGACAGTCGAGAAAA--CCAAG---CC-GATGCCACCACCGTTGTTTTTG-CTTTCTGCCATA---C----CAAATGGCCGCCCTCATCAGTCATCTGTAATCCAGGGCCTAGCACATGGGAAAAT-------GTCAT---------AAAACCAAG----AAGAG---TCAAA----CATTTATATTACAGAAAACAAGCA-AGGCAGCTtttt-ataacaaaaagaa-a
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18213   250966 194 +   720316 GGCGGGGGCTTGAATGACAGTTATTTA----CCAAA---CG-----------TCTTTGTCATCGTGTTTCTG--------C----TAAATGGCCGCCCTCATCATTCATCCATAATCCGTCG--CACCTTATGGAAGAAT-------GTCATAATATGTGAGAAACCAATG---ATGgc---tcaaa----catttatttcatAGAAAACGTGCAGAGGCAGttttgaaagaaagaaaaaca-g
i caeJap4.Scaffold18213 C 0 I 61

a score=20974.000000
s ce10.chrX              2525236 51 + 17718866 TTAGGAAAAGACTG-CGTTGCTTCATAATT----GGATAACCACCGAA-TAACAGTT----
s cb4.chrX              17273549 60 - 21540570 aaaaagagaatttg-tTTCGCTGTATGATTGGGGGGATAATCACCGAAGTAATAAgatggg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   104147 56 -  1794024 AGAAGTACAATTTGTTTTCGCTGTATAATT----GGATAATCACCGAA-TAAtaagtgggg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    127873 58 +   484378 AGGAGGGAGATTTG-TTTCGCTGTATGATT-GTGGGATAATCACCGAA-TAATGAGTGGGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3248021 59 -  4147112 agaagggagatTTG-TTTCGCTGTATGATTGGGGGGATAATTACCGAA-TAATACATTAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   251160 61 +   720316 I

a score=145421.000000
s ce10.chrX              2525287 574 + 17718866  
s cb4.chrX              17273609 569 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   104203 539 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    127931 560 +   484378  
i caeSp111.Scaffold582  C 0 I 35
s caePb3.Scfld02_0       3248080 544 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   251221 652 +   720316  
i caeJap4.Scaffold18213 I 61 C 0

a score=54.000000
s ce10.chrX              2525861 1 + 17718866 A
s cb4.chrX              17274178 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   104742 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 30
s caePb3.Scfld02_0       3248624 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   251873 1 +   720316 a
i caeJap4.Scaffold18213 C 0 I 96
e caeSp111.Scaffold582    128491 35 +   484378 I

a score=273.000000
s ce10.chrX              2525862 1 + 17718866 A
s cb4.chrX              17274179 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3248625 1 -  4147112 a
i caePb3.Scfld02_0      C 0 I 108
e caeJap4.Scaffold18213   251874 96 +   720316 I
e caeSp111.Scaffold582    128491 35 +   484378 I
e caeRem4.Crem_Contig15   104743 30 -  1794024 I

a score=192.000000
s ce10.chrX              2525863 38 + 17718866 AACAATGATTTTGGAAACCAATAGTGATTT-ATTTTGAT
s cb4.chrX              17274180 33 - 21540570 aa-----attttgagtttcaa-gcTGATTTGAATTTGAT
i cb4.chrX              C 0 I 4
e caePb3.Scfld02_0       3248626 108 -  4147112 I
e caeJap4.Scaffold18213   251874 96 +   720316 I
e caeSp111.Scaffold582    128491 35 +   484378 I
e caeRem4.Crem_Contig15   104743 30 -  1794024 I

a score=0.000000
s ce10.chrX              2525901 75 + 17718866 GTTTTTATttagaggtggagtaacggtactgaaagtatgggctcaaaatgtgctcagataaacaaatttagtgag
e caePb3.Scfld02_0       3248626 108 -  4147112 I
e caeJap4.Scaffold18213   251874 96 +   720316 I
e cb4.chrX              17274213  4 - 21540570 I
e caeSp111.Scaffold582    128491 35 +   484378 I
e caeRem4.Crem_Contig15   104743 30 -  1794024 I

a score=-1126.000000
s ce10.chrX              2525976 223 + 17718866 agaaaaaaaaacttctcaaaaattttttgaaaattttttacggtggttcagaatttcaaaaaaaaaattggcttaattttagttaaaaGAGGTTTTTagcaatttcctcactgacgctactcca-----------------------ccttta-aTGAAAACTAA------ATTTAATGTGAAGGACAAATGAAGCTAAATTATTGAAAGCTCACGTGAATCGTTTTTT------TTTT--CAAATTTCATCAGTTGTTGT
s caeJap4.Scaffold18213   251970 239 +   720316 agacaaaaaatttttagatcaaattttcgagcgccaattctcgtgtctctgtatctccatt------tttgcacactttttgctaga-------cttggcagaatgc-cactgtcgagacacaaacacatgcgaaaaggcgcgaattcctttacgtaggatctagcacgccgtgtattgtatgggggatttacgattatcacattgaaatcgcacaaaaaaaaatttttaccgatttttggcgaatttcacta--------
i caeJap4.Scaffold18213 I 96 C 0
e caePb3.Scfld02_0       3248626 108 -  4147112 I
e cb4.chrX              17274213   4 - 21540570 I
e caeSp111.Scaffold582    128491  35 +   484378 I
e caeRem4.Crem_Contig15   104743  30 -  1794024 I

a score=2970.000000
s ce10.chrX             2526199 27 + 17718866 TCAAAAAATTTTGCCGCCAGCAGGGGT
s cb4.chrX              4261021 27 + 21540570 tcaaaaatgtttgccGCCAGCAGGGGT
i cb4.chrX              n 4 C 0
s caeJap4.Scaffold18213  252209 24 +   720316 ---aaaaattagaaaaccaaaaggagt
i caeJap4.Scaffold18213 C 0 I 169
e caePb3.Scfld02_0      3248626 108 -  4147112 I
e caeSp111.Scaffold582   128491 35 +   484378 I
e caeRem4.Crem_Contig15  104743 30 -  1794024 I

a score=5972.000000
s ce10.chrX             2526226 67 + 17718866 CGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCCACATTATC
s cb4.chrX              4261048 67 + 21540570 CGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCCACACAACC
i cb4.chrX              C 0 n 0
e caePb3.Scfld02_0      3248626 108 -  4147112 I
e caeJap4.Scaffold18213  252233 169 +   720316 I
e caeSp111.Scaffold582   128491 35 +   484378 I
e caeRem4.Crem_Contig15  104743 30 -  1794024 I

a score=0.000000
s ce10.chrX             2526293 74 + 17718866 AAAAGTTTTATTATGATATTTGGTCTTTTTTGCACGATAGGAAATTTCAACATTTTATGGTGGTTCAAAATATC
e caePb3.Scfld02_0      3248626 108 -  4147112 I
e caeJap4.Scaffold18213  252233 169 +   720316 I
e cb4.chrX              4261115  0 + 21540570 n
e caeSp111.Scaffold582   128491 35 +   484378 I
e caeRem4.Crem_Contig15  104743 30 -  1794024 I

a score=-349.000000
s ce10.chrX             2526367 218 + 17718866 TTTTTTTAACTTGTGATTTTGCAACAATCTCGCATTTTTACAGAAATAAATTTTCACAGCTGCACTTTTAAACGAAAT-----GAGGAATTTTTTACTACCTTTAAAACCACTCATAAAAATATTTTATCGAGTTTTTTAAAAATTATTTTGATCTAGACTATTTTTCACATCATGAA--GATGTT----CGAAAGAT---------------------------GACTATACCATAAAACAAAGTTAGAATACAA
s caeJap4.Scaffold18213  252402 225 +   720316 tttttttgttgtaaaatttgccaaaaacc--------------aGATAAATTTTTT--GCGTGATTCTCATGCGAAATTTGTAAAGTCATTTCCTCAAAACGTTGGCACCTCTTTTAAC-------------GTTTGATGacaataattt--attttgaattttcttccCAGTACCAATAAACGCTGACACGAAAAATCCATAATCACGCCCCCTTTTTGCGTCAGAGCATACTTTAACCGGAAATAAaactgaaa
i caeJap4.Scaffold18213 I 169 C 0
e caePb3.Scfld02_0      3248626 108 -  4147112 I
e cb4.chrX              4261115   0 + 21540570 I
e caeSp111.Scaffold582   128491  35 +   484378 I
e caeRem4.Crem_Contig15  104743  30 -  1794024 I

a score=-556.000000
s ce10.chrX             2526585 2 + 17718866 AA-
s caeRem4.Crem_Contig15  104773 2 -  1794024 AA-
i caeRem4.Crem_Contig15 I 30 C 0
s caeJap4.Scaffold18213  252627 2 +   720316 -ac
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0      3248626 108 -  4147112 I
e cb4.chrX              4261115 0 + 21540570 I
e caeSp111.Scaffold582   128491 35 +   484378 I

a score=503.000000
s ce10.chrX             2526587 7 + 17718866 ATAAAAA
s caeRem4.Crem_Contig15  104775 7 -  1794024 ACAATTC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0      3248734 7 -  4147112 ATAGTAC
i caePb3.Scfld02_0      I 108 C 0
s caeJap4.Scaffold18213  252629 7 +   720316 acaacag
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              4261115 0 + 21540570 I
e caeSp111.Scaffold582   128491 35 +   484378 I

a score=515.000000
s ce10.chrX             2526594 2 + 17718866 TC
s caeRem4.Crem_Contig15  104782 1 -  1794024 -T
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582   128526 2 +   484378 TT
i caeSp111.Scaffold582  I 35 C 0
s caePb3.Scfld02_0      3248741 2 -  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213  252636 1 +   720316 -t
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              4261115 0 + 21540570 I

a score=266964.000000
s ce10.chrX              2526596 278 + 17718866 ACCTGTGAAAAGCGCTTCTTGGACCGAGACGATTCTCCATTGTACGGTCTCATAAATGGCTCAATGTTTCGAAAAAGCTCGGCGCCGGTAAGCGTGTTGGGAAGTTTCGTCAAAAATTCCACACAGTCATCAAAATCCATAGTCAGCAGTTTGGGCTCGTACATACGAAGAATGCCGAGTGCTGCCTTGAACAAAAACTCCTCGCCGTCACGAAAATACACATCCCAAATACGGCAGGTCACGTCTAGCGGTAACGATTTGGCGTACATTGCAAACGT
s cb4.chrX              17274217 278 - 21540570 ACCTGTGAAAAACGCTTTTTCGAACGAGCCGATTCTCCATTGTATGGTCTCATGAATGGCTCAATATTGCGAAAAAGCTCAGCGCCGGTCAGAGTGTCTGGAAGGCGAGTCAGGAACTCTACACAGTCGTCGAAATCCATGTTGAGCAGCTTCGACTCGTACATTCGGAGAATTCCAAGAGCAGCTTTGAACAAGAATTCCTCCCCGTCGCGGAAGTAGACATCCCAGATACGGCAGGTGACGTCGAGAGGAAGAGATTTGGCGTACATGGCGAAGGT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15   104784 278 -  1794024 ACCtgtgaaaaacgtttttttgaacGGGATGACTCGCCATTGTACGGCCTCATGAATGGTTCAATATTGCGGAATAGTTCAGCACCAGTAAGAGTATCCGGTAGACGTGTCAGGAACTCCACGCAGTCATCGAAATCCATTGTTAGCAGTTTAGGTTCATACATTCTCAGAATCCCAAGCGCTGCCTTGAACAGGAACTCCTCTCCATCTCGGAAGTAGACATCCCAGATACGACAGGTCACATCGAGTGGCAGTGATTTGGCGTACATGGCAAAAGT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    128528 278 +   484378 ACCTGCGAGAATCGTTTCTTTGAGCGTGATGACTCTCCATTGTATGGTCTCATGAATGGTTCAATATTTCGGAAGAGCTCGGCACCAGTGAGAGTATCCGGTAAACGGGTCAGGAATTCAACGCAGTCATCGAAATTCATGGAGAGCAGCTTTGACTCGTACATTCTCAGAATCCCAAGAGCTGCCTTGAATAAGAATTCCTCTCCGTCTCGGAAGTAAACATCCCAAATACGGCACGTCACATCCAATGGCAGTGATTTGGCGTACATGGCGAAGGt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3248743 278 -  4147112 ACCTGTGAAAAGCGTTTCTTTGAACGAGAGGACTCTCCATTATACGGTCTCATAAATGGCTCAATGTTCCGGAAGAGCTCTGCTCCAGTCAAAGTATCCGGAAGACGTGTCAAAAACTCCACACAGTCATCGAAATCCATGGTGAGAAGTTTCGACTCATACATTCTTAAAATTCCAAGAGCTGCTTTGAACAAGAATTCCTCTCCATCACGGAAATAGACATCCCAAATGCGGCAAGTGACATCTAATGGTAGTGACTTGGCGTACATAGCAAAtgt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   252637 278 +   720316 ACCTGCAAAAAGCGTTTCTTTGAGCGTGATGACTCTCCATTATACGGTCTCATAAACAACTCAATGTTGCGGAAAAGTTCTGCGCCAGTAAGTGTATCAGGGAGCCGTGTCAAGAATTCGACACAATCGTCGAAATCCATCGATAGCAGTTTTGGTTCGTACATGCGAAGAATACCAAGCGCTGCCTTGAACAAAAACTCCTCTCCATCTCGAAAATACACATCCCAGATTCGGCAAGTAACTTCCAGCGGGAGTGACTTGGCGTAGATGGCAAAAAT
i caeJap4.Scaffold18213 C 0 C 0

a score=3386.000000
s ce10.chrX              2526874 4 + 17718866 CCTG
s cb4.chrX              17274495 4 - 21540570 CCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   105062 4 -  1794024 ccta
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128806 4 +   484378 cctg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3249021 4 -  4147112 cctg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915 0 +   720316 C

a score=996.000000
s ce10.chrX              2526878 3 + 17718866 AAA
s cb4.chrX              17274499 3 - 21540570 TAA
i cb4.chrX              C 0 I 219
s caeRem4.Crem_Contig15   105066 3 -  1794024 aaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128810 3 +   484378 aaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3249025 0 -  4147112 C
e caeJap4.Scaffold18213   252915 0 +   720316 C

a score=91.000000
s ce10.chrX              2526881 1 + 17718866 T
s caeRem4.Crem_Contig15   105069 1 -  1794024 t
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3249025 0 -  4147112 C
e caeJap4.Scaffold18213   252915 0 +   720316 C
e cb4.chrX              17274502 219 - 21540570 I
e caeSp111.Scaffold582    128813 0 +   484378 C

a score=0.000000
s ce10.chrX              2526882 183 + 17718866 TTGGAGTTTTAAGGTGTTTAAGGTGAAATTAAAGGTGAATTAGCGCCGGCGGGAAATTACAGTCTTACCACTTTTTGAGAAAGCTACAGCACTATCGAATGTTTGGACGagggcttccatgtaggctcttaacccctgctcgcgttgcggctacatccgcctaccacgcgccacgagccgcgc
e caePb3.Scfld02_0       3249025   0 -  4147112 C
e caeJap4.Scaffold18213   252915   0 +   720316 C
e cb4.chrX              17274502 219 - 21540570 I
e caeSp111.Scaffold582    128813   0 +   484378 C
e caeRem4.Crem_Contig15   105070   0 -  1794024 C

a score=-678.000000
s ce10.chrX              2527065 29 + 17718866 attttgATCGGCGACTTCCAAAG-----------------------------AATTTT
s cb4.chrX              17274721 58 - 21540570 ATTCCTATAAGAaacatcgaaaatctgtcaactgattaaacaTTAGTTATTTAATGAT
i cb4.chrX              I 219 C 0
e caePb3.Scfld02_0       3249025  0 -  4147112 C
e caeJap4.Scaffold18213   252915  0 +   720316 C
e caeSp111.Scaffold582    128813  0 +   484378 C
e caeRem4.Crem_Contig15   105070  0 -  1794024 C

a score=-1517.000000
s ce10.chrX              2527094 49 + 17718866 AAAAAAAAAT-------TGGCATTTTTTTAGACATTTTTAGAGACTTTAAAAACTT
s cb4.chrX              17274779 54 - 21540570 --AAACAAatcatcagttgaaaatttttttgatattttttgaaggaatcgagataa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3249025 10 -  4147112 aaaaacaaat----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915  0 +   720316 C
e caeSp111.Scaffold582    128813  0 +   484378 C
e caeRem4.Crem_Contig15   105070  0 -  1794024 C

a score=-1729.000000
s ce10.chrX              2527143 5 + 17718866 TTAA-A
s cb4.chrX              17274833 5 - 21540570 ttgag-
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold582    128813 4 +   484378 ttaa--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3249035 1 -  4147112 ---a--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915 0 +   720316 C
e caeRem4.Crem_Contig15   105070 0 -  1794024 C

a score=-3613.000000
s ce10.chrX              2527148 25 + 17718866 AAATAGTACAAAATTTAGAATTTTT
s cb4.chrX              17274841 22 - 21540570 aaatggaACAGG---GTAGTCTTTT
i cb4.chrX              I 3 I 75
s caeRem4.Crem_Contig15   105070 25 -  1794024 aaataataaaagtttttggattttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128817 11 +   484378 aaataaatata--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3249036  4 -  4147112 aaat---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915  0 +   720316 C

a score=-5767.000000
s ce10.chrX              2527173 42 + 17718866 TAAAGAACCCTTTATCTATGATATTTTTCCCTTCTTTTTTCC
s caeRem4.Crem_Contig15   105095  4 -  1794024 ----------------------------tgga----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128828 21 +   484378 -------------atcTTCAATATTTCTTGTATA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3249040 21 -  4147112 --------------tcttcaatttctttagAATCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915  0 +   720316 C
e cb4.chrX              17274863 75 - 21540570 I

a score=-6372.000000
s ce10.chrX              2527215 23 + 17718866 AGTTTTTGCAATCAATT---------------------TACTTA
s cb4.chrX              17274938 44 - 21540570 AGCTGTTGTAATGGGACCTTATAGACAAAGTAAGCTTAAACTCA
i cb4.chrX              I 75 C 0
s caeRem4.Crem_Contig15   105099  6 -  1794024 --------------------------------------tacTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128849  2 +   484378 ------------------------------------------TA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3249061  8 -  4147112 ------------------------------------AATGATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   252915  0 +   720316 C

a score=612445.000000
s ce10.chrX              2527238 881 + 17718866  
s cb4.chrX              17274982 926 - 21540570  
i cb4.chrX              C 0 I 449
s caeRem4.Crem_Contig15   105105 938 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    128851 936 +   484378  
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3249069 932 -  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18213   252915 905 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-3436.000000
s ce10.chrX              2528119 10 + 17718866 GCGGGCGCGG--
s caeRem4.Crem_Contig15   106043  5 -  1794024 -----tttgg--
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    129803  1 +   484378 ---------g--
i caeSp111.Scaffold582  I 16 I 9
s caePb3.Scfld02_0       3250009  1 -  4147112 ---------g--
i caePb3.Scfld02_0      I 8 I 9
s caeJap4.Scaffold18213   253820  3 +   720316 ---------gca
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17275908 449 - 21540570 I

a score=125775.000000
s ce10.chrX              2528129 144 + 17718866 ACACTTACATTTCTTCCCACTTTGGCAAGATTTGTTCAACCCAGACACGACAATGCGCCGCCGTTTGTTCTTCAAGTCGTTTTTGTTCTGCTTTTGCTTGTAAGCGTTCTTTTTCGGCACGTTGTTCCTTCTTCTTTGCCTAAA
s cb4.chrX              17276357 144 - 21540570 ACACTTACATCTCTTCCCATTTTGGCAGTATCTGATCCATCCAAACCCTGCAATGAGCCGCCACCTGTTCCTCCAGCCgcttttgctcgatttttgcttgaacccgctctttttcagctcgctgctcttttttctttgcctGAA
i cb4.chrX              I 449 I 20
s caeRem4.Crem_Contig15   106053 143 -  1794024 -aactTACATTTCCTCCCATTTTGGTAGTATCTGCTCCATCCAAACACGGCAGTGTGAAGCAGCTTGTTCTTCTAAACGTTTTTGTTCTGCCTTCGCCTGCAGCCTTTCCTTTTCAGCTCGCtgctctttcttttttgcctGAA
i caeRem4.Crem_Contig15 I 5 I 3
s caeSp111.Scaffold582    129813 142 +   484378 tcactcaCATTTCTTCCCATTTAGGAAGGATTTGTTCCATCCAGACACGACAATGAGCAGCGGCTTGTTCTTCCAAACGtttttgctctgctttggcttgcaatcgctctttttcagctctttgctcttttt--cttgcctaaa
i caeSp111.Scaffold582  I 9 I 5
s caePb3.Scfld02_0       3250019 144 -  4147112 gAGCTTACATTTCTTCCCATTTGGGGAGAATTTGTTCCATCCACACTCTACAATGGGCTGCTGCTTGTTCTTCTAGTCgcttttgctcgacttttgcttggagtcgttctttttcagctctttgttcttttttctttgcctAAA
i caePb3.Scfld02_0      I 9 I 4
s caeJap4.Scaffold18213   253823 142 +   720316 --acttACATTCCATCCCATTTTGGCAATATTTGCTCCATCCATACACGGCAATGAGTGGCTGCTTGTTCTTCTAGACGtttctgttctgcttttgcctgcaggcgttctttttccgccttttgctcttttttcttggCCTTAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-25599.000000
s ce10.chrX              2528273  48 + 17718866 --------------------------------------------------------ATTGGAAAAAAAAAAGTTATTTTTGAATAT----GTCGTA-----------------TATAAATGAGAT---------------
s caeRem4.Crem_Contig15   106199   5 -  1794024 --------------------------------------------------------ATATA-------------------------------------------------------------------------------
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    129960  20 +   484378 --------------------------------------------------------atttttagaatga----------------------------------------------agCATGA------------------
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3250167  28 -  4147112 --------------------------------------------------------ATATTAATAAAAAC---------------------TCGTA-----------------TCGACATGA------------------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   253965 137 +   720316 AAGGAAAAGGTTTTGGGGATATTTTCATTTGATTATCGAGTACTTTTTGTGttttggtagaaaaaaatacgGCCCTTTCAAAAAATATCAGTCGCAAATTTTCCCAGTTTAATCCGAGAAGA---GTAATTTTCAGGTCT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17276501  20 - 21540570 I

a score=402876.000000
s ce10.chrX              2528321 655 + 17718866  
s cb4.chrX              17276521 628 - 21540570  
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig15   106204 644 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 1016
s caeSp111.Scaffold582    129980 620 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3250195 601 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   254102 651 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=1731.000000
s ce10.chrX              2528976 3 + 17718866 TAA
s cb4.chrX              17277149 2 - 21540570 -aa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    130600 2 +   484378 -aa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3250796 2 -  4147112 -aa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   254753 3 +   720316 taa
i caeJap4.Scaffold18213 C 0 I 1639
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=-837.000000
s ce10.chrX              2528979 1 + 17718866 A-
s cb4.chrX              17277151 2 - 21540570 aa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    130602 2 +   484378 ga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3250798 2 -  4147112 aa
i caePb3.Scfld02_0      C 0 I 1078
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=-804.000000
s ce10.chrX              2528980 10 + 17718866 TAGTTAATAT---
s cb4.chrX              17277153 10 - 21540570 gggaaaacat---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    130604 10 +   484378 ---aaaatagaat
i caeSp111.Scaffold582  C 0 I 997
e caePb3.Scfld02_0       3250800 1078 -  4147112 I
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=125.000000
s ce10.chrX              2528990 6 + 17718866 CAGTAA
s cb4.chrX              17277163 6 - 21540570 gagaaa
i cb4.chrX              C 0 I 1688
e caePb3.Scfld02_0       3250800 1078 -  4147112 I
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e caeSp111.Scaffold582    130614 997 +   484378 I
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=0.000000
s ce10.chrX              2528996 1682 + 17718866  
e caePb3.Scfld02_0       3250800 1078 -  4147112 I
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e cb4.chrX              17277169 1688 - 21540570 I
e caeSp111.Scaffold582    130614  997 +   484378 I
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=365.000000
s ce10.chrX              2530678 36 + 17718866 TTTTTCCTTTTTTCTAAAAAAAAATATCCCTCACAA
s caeSp111.Scaffold582    131611 30 +   484378 TTTTTCAGCCTTTCTGAT------TATCCCTCTGCT
i caeSp111.Scaffold582  I 997 C 0
e caePb3.Scfld02_0       3250800 1078 -  4147112 I
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e cb4.chrX              17277169 1688 - 21540570 I
e caeRem4.Crem_Contig15   106848 1016 -  1794024 I

a score=-1037.000000
s ce10.chrX              2530714 10 + 17718866 TCCTGCTGCA--
s caeRem4.Crem_Contig15   107864  9 -  1794024 TCCtact-ta--
i caeRem4.Crem_Contig15 I 1016 C 0
s caeSp111.Scaffold582    131641 10 +   484378 -TTTTCT-TGCA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3250800 1078 -  4147112 I
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e cb4.chrX              17277169 1688 - 21540570 I

a score=-1051.000000
s ce10.chrX              2530724 29 + 17718866 TTTTTTTTTGGTTT---TTCGAATTTCATTTT-----------
s caeRem4.Crem_Contig15   107873 32 -  1794024 -----------tttttcttcgatcAGCATTTTCCCAGTATTAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    131651 35 +   484378 ------TTAAGTTCTGTCTTGAGACGTCTTTT--CGGCGTTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3251878 41 -  4147112 tttttctctcatttcgcTTCGAAAACTAATTT--CGGCGTTAA
i caePb3.Scfld02_0      I 1078 C 0
e caeJap4.Scaffold18213   254756 1639 +   720316 I
e cb4.chrX              17277169 1688 - 21540570 I

a score=24414.000000
s ce10.chrX              2530753 46 + 17718866 TGTTTATA--ATTTCTT-ACATAG--------AGAGAGTCAGTTGTGGCCGAACAGA
s cb4.chrX              17278857 52 - 21540570 tgttttta--aattttc-accAAAT-GATCATAAGGAGTCAGTTGT-GCCGAACCGA
i cb4.chrX              I 1688 C 0
s caeRem4.Crem_Contig15   107905 55 -  1794024 TGTTTatagtatttttc-aaataatcaatcACAAGGAGTCAGTTGT-GCCGAACAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    131686 56 +   484378 tatttataatatttttctaaataatcAATCACAAGGAGTCAGTTGT-GCCGAACCGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3251919 55 -  4147112 Tgtttataa-aattttccaaataatcaATCACAAGGAGTCAGTTGT-GCCGAACCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   254756 1639 +   720316 I

a score=63282.000000
s ce10.chrX              2530799 145 + 17718866 AAAACGTGATAGTACTTGAAA--GCTCACAAGA----------------------CGTCGAG-AAAGTCGCACGGCTAGTGAGCAAAAAGAGAGAAACTC--AATTGTTTACATTTG--CCCAATGGAATTAT---ATCTGAACGGCACGAACATCAAA-TCTCTGCGATCAACTTTT
s cb4.chrX              17278909 135 - 21540570 AAAACGTGATAGTACTTGAAACGGCTCACAAGGCA-------------CAAACGCCGACAAG-AAAATT------------------------GGAACTCTGTTTTGTTTACTTTTGTACAC-tgggaatttttcgattcgaaCGGCACGAACATCAAGTCTACC----TCCTAATTT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   107960 129 -  1794024 AAAACGTGATAGTACTTGAAA--ACTCACAAGA----------------------CGTCGGG-AAAATCGCACGG-------GGTTGAGGGAGGTAACCC--CTTTGTTTACATTTG--CCC-TCGGAATTAT---ATCAGAACGGCACGAACATCAAGTCCTCT----TCAT-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    131742 124 +   484378 AAAACGTGATAGTACTTGAAA--ACTCACAAGA----------------------CGTCGAG-AAAGTCGCAC--------------CGGAGGGGAACCC--TTTTGTTTACATTTG--CCC-TCGGAATTAG---ATCTGAACGGCACGAACATCAA---CTCc----tcaactttt
i caeSp111.Scaffold582  C 0 I 78
s caePb3.Scfld02_0       3251974 120 -  4147112 AAAACGTGATAGTacttgaaa--actcacaaga----------------------CGTCGAGAAAAGTCGC---------------------GGGAACCC--CTTTGTTTACATTTG--CCC-TCTGACTTAT---ATCTGAACGGCACGAACATCAAG-CCTCT----CAAAAGTTT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   256395 135 +   720316 AAAACGTGATAGTACTTAAGA---CTAGCGGGGGAGGGAAAATAGAAGCAAATGTGGTCGGG-GGAACC---------------------------ACTC--GATTGTTTACATTTG--CCC-TTGGAATTAG---ATCTGAACGGCACGAACATCAAAGTCAAA----GCCACTTTT
i caeJap4.Scaffold18213 I 1639 C 0

a score=-10420.000000
s ce10.chrX              2530944 61 + 17718866 ---AAACATTGCCGCCTAAATTC----------GTATTCTATAAACCCTACATTAAGAAATTG-------TTCGAGTTGTT
s cb4.chrX              17279046 53 - 21540570 ---ATCCCAAACCGCCTAC--------------ACATTATATAAACT----ATTTAGAATTGT-------CTTCAAGCCTT
i cb4.chrX              I 2 I 14
s caeRem4.Crem_Contig15   108089 65 -  1794024 ------CCTAGCCGCCTACTTTCCTTGGGAGAGTTCTAATATAAACT---CAGTTAGTTTATT-------CTATGGTCATT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3252097 63 -  4147112 ---GTGCATAGCCGACAAACT------------TCATTTAATAAACC---CAGAAAGTTTATCGCAATGGTTTAGTTCGTT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   256530 60 +   720316 GATGTCCATTCCATCCCAT--------------CCGTCATCTCTTCTCTCAATTCTGACATGG-------TTTATAGTGTT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    131866 78 +   484378 I

a score=-2830.000000
s ce10.chrX              2531005 19 + 17718866 -------------CAAAATGGAGTAGACAACG
s caeRem4.Crem_Contig15   108154 16 -  1794024 -------------TAAAAC---CCAACAGACA
i caeRem4.Crem_Contig15 C 0 I 7
s caePb3.Scfld02_0       3252160 14 -  4147112 -------------CAAAA-----CAGAGAACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   256590 27 +   720316 TTATATATATGCCCAGAA----ATATACAAC-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17279099 14 - 21540570 I
e caeSp111.Scaffold582    131866 78 +   484378 I

a score=126.000000
s ce10.chrX              2531024 11 + 17718866 ACTAAATGCTC
s caeRem4.Crem_Contig15   108177 11 -  1794024 ACCAGAACCCC
i caeRem4.Crem_Contig15 I 7 I 9
s caeSp111.Scaffold582    131944 11 +   484378 ACTAAACcttc
i caeSp111.Scaffold582  I 78 I 8
s caePb3.Scfld02_0       3252174  8 -  4147112 ---AAGACCCC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   256617  5 +   720316 ------TGTTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17279099 14 - 21540570 I

a score=139918.000000
s ce10.chrX              2531035 241 + 17718866 AAAATCATATTAGATGTA--ACCAATGACC----AAAAAAAA----------------------------------ACGAGCTGCAGGAAA------------------------------TAATAGTAGACAAGGAA----------CAAAAA-------------------TACACCAAACGAAAAACATTAAAAAAAGCTCACTTAGCGGCTGACGGTGCCAGAGCCGGTGTCCCGTTTGCTGTTGTGATCCTTCGTGCAAAATTCAATTGGATTTGTGCCGATTCATATGAGCTGCGACGAATGTGACCTCGACGGAATTTGGTTTCTGAAAAAAA
s cb4.chrX              17279113 227 - 21540570 AAAATTCTATT---------AGCAATGA------AACAACTC----------------------------------------------------------------------------------TAGCAGACAAggaa----------caaaaacttttttttctttttttttcagagctgaaaataac------aaaaaactcacttagCTGCTGACGGCGCGAGGGCAGGTGTTCCATTGGCCGTTGTGATCCGACGGGCAAAGTTCAATTGGATTTGTGCCGATTCATATGAGCTGCGACGAATGTGACCGCGACGGAATTTGGTGTCTGCAACAAG
i cb4.chrX              I 14 I 114
s caeRem4.Crem_Contig15   108197 224 -  1794024 AAAATCCTATTAGTGTTGG-AGCAATGAAC----AACAGCAA----------------------------------------------------------------------------------TAGCAGACAAGGAA----------Caagaa-------------------aatgactgaaaataacaacaaaaaaagactcACTTAGCGGCTGACGGCGCCAGAGCCGGTGTTCCATTGGCCGTTGTAATCCTTCGGGCAAAGTTCAATTGGATTTGCGCCGATTCATACGAGCTGCGACGAATGTGACCTCGACGGAATTTGGTTTCTgtaacaga
i caeRem4.Crem_Contig15 I 9 I 1
s caeSp111.Scaffold582    131963 257 +   484378 aaaattctattAGTGACGG-AACAATGAAC----AACAGCAAttgcccccccccctttct---------------ctct---ctcaacaG-------------------------------CAGAAGTAGACAAGGAA----------CAAGAA-------------------ACTGGCTGAAAATaacaaggaaaaaagacTCACTTAGCGGCTGACGGCGCCAGAGCCGGTGTTCCATTGGCCGTTGTAATTCTTCGGGCAAAGTTCAATTGAATTTGCGCCGATTCATATGAGCTGCGACGAATGTGGCCTCGACGGAACTTGGTTTCtgtaagaaa
i caeSp111.Scaffold582  I 8 I 1
s caePb3.Scfld02_0       3252186 241 -  4147112 GAAATCAGATTAGTGACAG-GAAAATGAACAATGAACAACAA---------------------------------CTCGAGACTCAGTGG---------------------------------GTTGTAGacaaggaa----------caaaaa-------------------ataagctggaaataaca---aaaaaatacttacttAGCTGCTGAAGGCGCTAAAGCCGGTGTTCCATTGGCCGTGGTAATCCGTCGAGCGAAGTTCAGTTGGATCTGGGCCGATTCATATGAGCTGCGACGGATATGGCCTCGACGGAATTTTGTATCtacaagaaa
i caePb3.Scfld02_0      I 4 I 1
s caeJap4.Scaffold18213   256622 308 +   720316 ---ATAATAAGAGAGATGGAAGCAAACA------AATAAGCA--GACTCTTCCGCTTTCTTGTTCCATTCGTATGCATGAATTTTCATGCCCATTCCCACATTTTTCGTGTTgttttttctcagaaaaaaacaaaaaagtcttATTAGTGAGAA-------------------ATTGAGGGAAAACAACAAGT--ACACGACTCACTTGGCGGCTGACGGCGCCAATGCCGGCGTCCCGTCGGGTGATGTTATCCGGCGAGCAAAGTCCAGTTGGATTTGGGCCGATTCATATGAGCTGCGACGAATGTGTCCGCGACGGAATTTGGAGTCTGCAAAATA
i caeJap4.Scaffold18213 C 0 C 0

a score=-1968.000000
s ce10.chrX              2531276 27 + 17718866 AAAACATCAAAATTAAAGTATTGGAA------------------------------------------A
s caeRem4.Crem_Contig15   108422 59 -  1794024 caaaaatacaatttagGGTAATGTGATGCCTCGAC------GTTATGTGCCGTGTCGCCGGGTT----A
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    132221 65 +   484378 caaaaattgaattgaggGTAATGTGATACCTATCCTGTTGGGTGATGTGCCGTGTCggtcagag----a
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3252428 69 -  4147112 taaaaattgaaaagagggTAATGGGATACTTTGTCTAATGTGTTATGTGCCGTGTCATCGAGGgcggaa
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   256930 26 +   720316 -AAAGAATAAGATTAAGGTGTAAAAAA------------------------------------------
i caeJap4.Scaffold18213 C 0 I 522
e cb4.chrX              17279340 114 - 21540570 I

a score=-11979.000000
s ce10.chrX              2531303 40 + 17718866 CAAAA----GTGCACTTCGAAA---------TGTCACACTG----------------GCGCCAACTGAT-----------------------------------------
s caeRem4.Crem_Contig15   108481 94 -  1794024 GAAAACTTCGGGAG----AGAAACGCACATTTGTTTCGCTGCCTTGATAACGAGAATTTGTCAGATAAG--------TCTACTCTTT----GTACGCAACACTACTCGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    132286 81 +   484378 aaaaa----gtgag----aaaaa-------gtgtCTCTCTGCACTTTT---------GTGTGCGGTAAAGAGTAGCACATCATCAT-----CTAGACAATACAAACGGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3252497 89 -  4147112 aaaaa----gtgaa----gaaa-----------ttcCCCCGCACTTTTTATCGCAA-GTGTGCGGTGAAGTGCGAC-TACAATCATGTTAACTAGCCGAGACTGGCGCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e cb4.chrX              17279340 114 - 21540570 I

a score=80624.000000
s ce10.chrX              2531343 93 + 17718866 AGATAATGTGGCCGCCATAGCCCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAATAATTTT
s cb4.chrX              17279454 93 - 21540570 AGGTTGTGTGGCCGCCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCggcaaacattttt
i cb4.chrX              I 114 C 0
s caeRem4.Crem_Contig15   108575 93 -  1794024 GGAAAGTGTGGCCGCCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAAtatcttt
i caeRem4.Crem_Contig15 C 0 I 201
s caeSp111.Scaffold582    132367 93 +   484378 AGGCAATGTGGCCGCCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCggcaaatattttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3252586 93 -  4147112 GAGAAATGTGGCCGCCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAACATTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I

a score=-3332.000000
s ce10.chrX              2531436 10 + 17718866 AAAACAACAA--------
s cb4.chrX              17279547 10 - 21540570 --------gattctatta
i cb4.chrX              C 0 I 146
s caeSp111.Scaffold582    132460  9 +   484378 --------gattttgca-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3252679  5 -  4147112 --------gcttc-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=-6709.000000
s ce10.chrX              2531446 110 + 17718866 CTCATGAAATTGGTTAGAAATTTGAAAGCAGGTGAAACCCGTTTCAAAGCGATTCACGCGGATTTTCAATAATTTAACTGTGTTTGTCTTGTACATTATACTTTGTTTTC----
s caeSp111.Scaffold582    132469  39 +   484378 -----gaaa--------agatttca-------taaaa--tgtttt-----------------------------------------------------tattttttcaactaca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3252684  16 -  4147112 -----------------------------------------tttc-----------------------------------------------------tatttttttttc----
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18213   256956 522 +   720316 I
e cb4.chrX              17279557 146 - 21540570 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=25.000000
s ce10.chrX              2531556 39 + 17718866 Attaaaggtggagtagcgccagtgaaaaatggtgccaaa
s caeSp111.Scaffold582    132508 27 +   484378 ---aaaagaggaataatt----tgaaatattgtG-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3252700 12 -  4147112 I
e caeJap4.Scaffold18213   256956 522 +   720316 I
e cb4.chrX              17279557 146 - 21540570 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=194.000000
s ce10.chrX              2531595 11 + 17718866 atgaccgaata
s cb4.chrX              17279703 11 - 21540570 AGGatagaaca
i cb4.chrX              I 146 C 0
s caeSp111.Scaffold582    132535  9 +   484378 ATAATTGAA--
i caeSp111.Scaffold582  C 0 I 6
e caePb3.Scfld02_0       3252700 12 -  4147112 I
e caeJap4.Scaffold18213   256956 522 +   720316 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=-16274.000000
s ce10.chrX              2531606 119 + 17718866 ----------------tcaaatgcaaact-----tttcaaaactgtcta----aaAGTGACAACTATAGAGGTTTTGTCA--------CTTTTTGAAAAAACTATAGCACTGACGTACTTTTGAATTTCTACAATATTTGAATATTAATTTT
s cb4.chrX              17279714 135 - 21540570 aaaaacagaaaatatttttttctgaaattaacgGTTCTAGAAATGTCTTGCCAGTGTTCGAAAACCAGGAATTCTAAAGA--------GAATATACcagaaatct-------attttttttcgaattttca-aaattttcaaagaaaccgt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    132550  93 +   484378 ----------------GTAAGTTGATAAC--CGGTTTC----CCTTCTT----------------ATAGAATTCTAGATGAGGATCATGTTCACG--TGAAATCT-------ACATGAATTC------------AGTTtaaatgatattttt
i caeSp111.Scaffold582  I 6 I 164
s caePb3.Scfld02_0       3252712  86 -  4147112 ----------------ttACGTTCGAACCTtctgtttc----atgtttt----------------caaaaagctaaGATA--------GTTCACAATagtatttt-------tcatagttt---------------tttcgTTATTAGCTTT
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=-13599.000000
s ce10.chrX              2531725 203 + 17718866 -----------------TGACACGTAT--GTTG---------------ACCATTAAATTCGAAGGG---------------------------AAACTTTTTTGGCC------AACTT------CCGGAAAAGTGACCAAAAACT----GAGATTTTT-CCAATTTTCGAAAAATCACAAA--ATATTAGAACC----TTTGATCATTTTCGTGCCATATGCAAATTTTAAAGAAATTTCCTCCACCTAATTAATAATTCGGTTTCAAGTTTAATAAATTTTAGAAT-
s cb4.chrX              17279849 257 - 21540570 tatcctc-----aattttgaaatcttccgCTAGCTTAGAAATGGATCTATtatcattttcaaagattGTCTTTCATCTAATACAAGCCCTCCAAAA-----TCGTTCactttaaactcaattatctcgattgttgta--aaaaatataacaaatttgt--caact---gataaattattaatCATAATAGAaccaagattttatcagttgactaattttcgttatctttcaaagga--------atcga---gataattgagctcaaagtttacca---TTTGGGTCT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3252798 162 -  4147112 CATCATCATGTGAACTATCAAACTTTTCTGTAG---------------ACAATAACTTGCCTAGAC---------------------------AAA-----TTGGCC----TGCACTC------TTCAATCATTGGC--acaatt----cagattttttccaatt---gttctTTCACAGTacaaaagaaaaccaaaaaatga-cagttca------------gtttttcagtaaa-----------------------------------tacta------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e caeSp111.Scaffold582    132643 164 +   484378 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=-18338.000000
s ce10.chrX              2531928 148 + 17718866 -TTTCCATTGCATCAGT--------TATTTTTTAATTTCCAACAAAATTTTCAAATC-----------------------------AAATACAACTTT---------------TTTCTCTCAAAATAAATCTTATTCATTTGCTATTTCGG------------TAATTAAGAAC--AACCAAGGTTGTTTTT-----------------CAATTTTTTTTTTCGTTCTGTTT--
s cb4.chrX              17280106 221 - 21540570 TCTTCTATTGAAGGAAATATAGTAATAGTTgtcaaattttctcgaaatttcaaaaaatccgtaATCTACggatttttctaattctgaaatcctgctTCTATGTCTAATGGGCGTTTCcctggaaaattttctaattctttTTGCCTTTTTACACAGGTACTCatcttcaaaaac--aa--aagaacaCTAATGtttgttttccaatttccga---------tTACGGTATCTCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    132807 142 +   484378 -TCCCAATTGGCATAATT-------TATTCCTCTGGTTCCCACACAGTAccaaaataaagaaaaacttcaaat--------ctcaaaataaCTACTTC------------------------AAATAATTCCAGTTATT------------------------TCTCTAACAACTGAATTCAGACTCTTAAT-----------------CAA---------acactttgttt--
i caeSp111.Scaffold582  I 164 C 0
s caePb3.Scfld02_0       3252960  72 -  4147112 -tttcaaatga--------------------------------acaatact-------------------------------------------cttc------------------------aattttttcc--------------------------------ctccaaaaac--aATTTAGACACTTAAT-----------------CAA---------ACATCTTGTTT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e caeRem4.Crem_Contig15   108668 201 -  1794024 I

a score=4132.000000
s ce10.chrX              2532076 15 + 17718866 TTCTTGTTATCAGAC
s cb4.chrX              17280327 10 - 21540570 -----ATTACACAAA
i cb4.chrX              C 0 I 110
s caeRem4.Crem_Contig15   108869 15 -  1794024 tttttgttatcGAAC
i caeRem4.Crem_Contig15 I 201 C 0
s caeSp111.Scaffold582    132949 13 +   484378 --tttgttattgaaC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3253032 13 -  4147112 --TTCGTTATCGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I

a score=2284.000000
s ce10.chrX              2532091 59 + 17718866 AGATGCCCTTCCTACCCACACTTAGAACCTCACTCTCGTCACTTCCTTGTTTTCTTCCA-------------
s caeRem4.Crem_Contig15   108884 38 -  1794024 AAATGTCTTGACCTCCC-CACTCAG--------------CGCTTCCTTGTTTT-------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    132962 53 +   484378 AAATGTTCTCTCATATC-----TAG--------------CACTTCCTTGTTTTTACCTCCCCGGTTCTTTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3253045 40 -  4147112 AAATGTCCTTGTCAATCCCTCTTAA--------------CGcttccttgttttt------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I
e cb4.chrX              17280337 110 - 21540570 I

a score=-7345.000000
s ce10.chrX              2532150  72 + 17718866 CATTT---------------------TAC------CACA-------------------------------------------------CATTTTTTTCCGATAA--AATCAATGATCTATGTCATAATCCATATTGAATTCGTAAAATCA
s cb4.chrX              17280447 130 - 21540570 CACTCAATCAAACATCTTGTTATTGTTATTTAACAAGTGTCCTTTTCGTTTTCTCCAATTTACACTTCCTTGTTAATATATTAGTTCATA----TTCCCGATAATCCAAC---------CTTCCTAATCtcaaat-------caaaatca
i cb4.chrX              I 110 C 0
s caeRem4.Crem_Contig15   108922  44 -  1794024 --------------------------TAT------AGTG-------------------------------------------------CA----TTCTAGATAA--CAAC------------CCCTATctccatc-------aaaaatca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    133015  48 +   484378 CGCTC---------------------TAT------AGTA-------------------------------------------------CA----TTGCAGATAA--AAA-------------TGCaatctaattt-------taaaatct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3253085  49 -  4147112 ---tc---------------------aat------agta-------------------------------------------------CA----TTCTAGATGA--CAAC---------CCTCTCTATCTaaatt-------taaaatca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   256956 522 +   720316 I

a score=181351.000000
s ce10.chrX              2532222 171 + 17718866 AAACTGACCTTGTGCGGTA---GAAGGTGACTCGGCACCACCTTGACATCCCAACGATGGTGTCCTGTCTAGACTTTTCGTGTCAGTGTTGTAGGATAAGGGCAGGTTTTCGACGACTGTCGCCAGGGAGCTGCTCTGTGAGCAACTTCTGCCCGCCAGTTTTCTATCTGAAAA
s cb4.chrX              17280577 171 - 21540570 aaactaaCCTTGTGTGGTTGAAGAAGGCGATCCGG---TTCCAGGACATCCCAGAGACGGCGTCCGGTCCAGACTTTTTGTGTCTGTATTGTAGGAAAGAGGCAGATTCTCCACAACTGTCGCCAGGGAGCTGCTCTGCGAGCAACTTCTGCCCGCCAgttttctgtctgaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   108966 168 -  1794024 aaactgaccTTGTGTGGTT---GAAGGTGATTCCG---TTCCTTGACATCCCAAAGATGGCGTCCTGTCCAGACTTTTTGTGTCTGTATTGTAGGAAAGAGGCAGATTCTCCACGACTGTCGCCAAGGAGCTGCTCTGTGAGCAACTTCTGCCCGCCagttttctgtctgaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    133063 168 +   484378 taACTGACCTTGTGTGGTT---GAAGGCGATCCAG---TTCCTTGACATCCAATCGACGGTGTCCTGTCCAAACTCTTTGTATCTGTGTTGTAGGACAGTGGCAGATTCTCTACCACTGTCGCCAAAGAGCTGCTCTGTGAGCAACTTCTACCCGCCAGTTTTCTATCTGAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3253134 168 -  4147112 aaactgacctTGTGTAGTT---GAAGGTGATCCAG---TTCCCTGACATCCCAGAGATGGCGTCCTGTCCAGACTTTTTGTATCTGTATTGTAGGAAAGAGGCAGATTCTCCACGACTGTCGCCAAGGAGCTGCTCTGTGAGCAACTTCTGCCCGCCAGTTTTCTGTCTGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   257478 168 +   720316 AAACTTACCAGGCGCAGTT---GAAGGTGACCCAG---CTCCCTGACAGCCCAGAGACGGCGTCCTGTCCAGACTCTTCGTGTCAGTGTTGTAGGAGAGCGGTAGATTCTCCACCACGGTAGCCAGGGAGCTGCTCTGTGAGCAACTTCTTCCcgccagttttttttctgaaaa
i caeJap4.Scaffold18213 I 522 I 22

a score=8375.000000
s ce10.chrX              2532393 33 + 17718866 CAGGCAGACGGTCGGTGAATACGGACAAGGAAC
s cb4.chrX              17280748 24 - 21540570 tga---------TATCAAATAGGGAGTAGGTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   109134 33 -  1794024 cgAGTTGACGGTCATTGAATATAGTGGTGGTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    133231 33 +   484378 CGAGCCAATAGTTAGAGAATAAGGGTTCGGTAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3253302 33 -  4147112 CGAGCTGATAGTCATTGAATAGGGAGTAGGTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257646 22 +   720316 I

a score=17758.000000
s ce10.chrX              2532426 126 + 17718866 CATTGAGAAAGAGAGA---TAATCAAACGAATAGACAGAGACAGATTGTTGATGGAGAACAA---ATGCAATTGTCTCGAGG-G---GGCGTGGC-----ATAGT----------ATGCTAGCAGAGAAGTGAGAAATATAGTGGGCGGAG
s cb4.chrX              17280772 109 - 21540570 CATTGAGCTG--AGAA---TAAGTGGA-GAACAAAGAAG------------TAGGGAACGAG---GTGCaa-------aaaa-aGAGGGCGTGGC-----CTAGAAGAGAT--TGCTG------GTCAAGTGAGAAataaaatgggcggag
i cb4.chrX              C 0 I 138
s caeRem4.Crem_Contig15   109167  97 -  1794024 CATCGAAGAGGCAGAA---TAATCCAA-CAATAAATCGA------------CAAGA---TAG---GTGCAA-------AATG-A---GGCGTGGT-----TAACA----------TTG------GtcaagtgaaaaataaaataggcGGAG
i caeRem4.Crem_Contig15 C 0 I 20
s caeSp111.Scaffold582    133264  94 +   484378 CATTGTGATAGTAAGA---TAATCACA--AACAGATCAA------------AGAGAAACGAG---GTGCAa-------gagt-g---ggcgtggc-----ttggA----------TTG------GTCAATTGAG-----AAATGGgcggag
i caeSp111.Scaffold582  C 0 I 47
s caePb3.Scfld02_0       3253335 110 -  4147112 CATTGTAATAGTAAGG---TAATCACA--TAGAAATCGGGAACGC------GGGAGAAGAGG---GTGCAA-------AATG-G---GGCGTGGTTTGGATTGGA----------TTG------GTCAAGTGAGAAATAAAATGGGCGGAG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18213   257668 116 +   720316 TGTTGGGCAACAAAGAAatcaaccaaaaaaagaaagtgg------------aAAAGGATGAGCGAgtgcaa-------aaagtg---ggcgtgac-----TTGGGTGGGATAGTTTTG------GTCAAGTGAGAAATAAAATGGTGGG--
i caeJap4.Scaffold18213 I 22 C 0

a score=0.000000
s ce10.chrX              2532552 1 + 17718866 C
e caePb3.Scfld02_0       3253445 10 -  4147112 I
e caeJap4.Scaffold18213   257784 0 +   720316 C
e cb4.chrX              17280881 138 - 21540570 I
e caeSp111.Scaffold582    133358 47 +   484378 I
e caeRem4.Crem_Contig15   109264 20 -  1794024 I

a score=-5426.000000
s ce10.chrX              2532553 42 + 17718866 AGTATGTCTAGTAAAATACTCAC-------TAATA---AACAATCACAGATA
s caeRem4.Crem_Contig15   109284 26 -  1794024 AGCACACCCAGACAATAAACCA---------AATA-----------------
i caeRem4.Crem_Contig15 I 20 C 0
s caePb3.Scfld02_0       3253455 36 -  4147112 TG-------AGACAAATACCCA---------AGTATTCAGTAACGATATCGg
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18213   257784 42 +   720316 ----CGTATAGGGAATAAGCGACTAGGTGGTAATA------GATGACAGATA
i caeJap4.Scaffold18213 C 0 I 1961
e cb4.chrX              17280881 138 - 21540570 I
e caeSp111.Scaffold582    133358 47 +   484378 I

a score=198.000000
s ce10.chrX              2532595 12 + 17718866 CGCAAAGAATGC
s caeRem4.Crem_Contig15   109310  8 -  1794024 ---GAAGAGTG-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3253491 11 -  4147112 tgcgaaaaatt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17280881 138 - 21540570 I
e caeSp111.Scaffold582    133358 47 +   484378 I

a score=8316.000000
s ce10.chrX              2532607 49 + 17718866 ATATCGCGCCAAA----GA--AATGTTCCAATAA-TTTTTGTAGTTTTTTCTGTGT
s caeRem4.Crem_Contig15   109318 55 -  1794024 ATATCGGGgtgaaaattggataaaatgtGAACAA-TTTTTGGAGGGCATTGTGAGT
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    133405 54 +   484378 ATATCGGtgcgaaaattga--aaaatgcgaacaattttttgaagggcATTGTGGGT
i caeSp111.Scaffold582  I 47 I 43
s caePb3.Scfld02_0       3253502 36 -  4147112 -----------------ga--aaaatgcgaacaa-tttttggagggcACTACGGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17280881 138 - 21540570 I

a score=-352.000000
s ce10.chrX              2532656 21 + 17718866 CTCCAAATTCTTCAA--TATTTC
s caePb3.Scfld02_0       3253538 19 -  4147112 ----AAGGTGTGTAggcgatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17280881 138 - 21540570 I
e caeSp111.Scaffold582    133459 43 +   484378 I
e caeRem4.Crem_Contig15   109373 11 -  1794024 I

a score=-1996.000000
s ce10.chrX              2532677 21 + 17718866 CCTATTTTTTGCAGTCACACA-
s caeRem4.Crem_Contig15   109384 16 -  1794024 -ccgatttttgtttcaa-----
i caeRem4.Crem_Contig15 I 11 C 0
s caePb3.Scfld02_0       3253557 14 -  4147112 --------ttgtttctttgtaG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17280881 138 - 21540570 I
e caeSp111.Scaffold582    133459 43 +   484378 I

a score=-2315.000000
s ce10.chrX              2532698 10 + 17718866 CTCACGCAAA----
s cb4.chrX              17281019  9 - 21540570 CTTACGCAG-----
i cb4.chrX              I 138 C 0
s caeRem4.Crem_Contig15   109400 10 -  1794024 ----tgcAGACaag
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3253571  5 -  4147112 -ACATG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e caeSp111.Scaffold582    133459 43 +   484378 I

a score=42270.000000
s ce10.chrX              2532708 127 + 17718866 AAACGGAAACAAAACGAAT-------------CAAAGATAAAAGATATTCGCGTAAAGAAAAAGGCATGCA-----GCAAAAAAT-------ATGAAAAGAGAAAAATGTCGG------AATGCTTGTGAAAAAAGAGAGAACAGAAAGTGACAAAAG
s cb4.chrX              17281028 116 - 21540570 --GCGgaaacaaaaagaatgtgaagaagagagaaaagataaaagatattagaaggtgttgaaagaagaaaa--------------------------aaaaaagaaaaactga--------------tgaaaaaaGCGTGAAGAATCAGATACAGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   109410 139 -  1794024 aaacggaaacaaaaagaac-------------agaagataaaagatatttgaagggtgagagaaaaggaaaaattgaagagaaaaaga----gcgtcaagaaacagaaaCCGATACTGGAATGCG--TGAAAggagaaagaacaaaaagtgacaaaag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    133502 123 +   484378 AAacggaaacaaaaagaat-------------agaagataaaagatatttgacgagagagaaaaa--aaga-----gtgagaaaa-------gTGTCAAGAAATAGATATAGG------AATGCT--TGAAAggagaaagaacaaaaagttaCAAAAG
i caeSp111.Scaffold582  I 43 I 2551
s caePb3.Scfld02_0       3253576 132 -  4147112 aaacggaaacaaaaagaat-------------gaaagataaaagatatttgacgcgagagaaaagacaaga-----gtgagaaaaaaacgcgATGTCAAGAAACGGATACAGG------AATGCT--TGAAaggagaaagaacaaaaagttacaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I

a score=-96.000000
s ce10.chrX              2532835 1 + 17718866 A
s cb4.chrX              17281144 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   109549 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 558
s caePb3.Scfld02_0       3253708 1 -  4147112 a
i caePb3.Scfld02_0      C 0 I 1539
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e caeSp111.Scaffold582    133625 2551 +   484378 I

a score=695.000000
s ce10.chrX              2532836 66 + 17718866 GGG--TACAAAGGTGAAAAAAGAGCGAAGAACT-----GTAGAGCGTCTTTAACTATTTCTTTGTTATGAGTA
s cb4.chrX              17281145 70 - 21540570 GGAATGTTAGAAGAGgagaaagaacaaaaaattttttgataaaatgac---aATAGTTTCATTGTTCAGAGTA
i cb4.chrX              C 0 I 327
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e caeSp111.Scaffold582    133625 2551 +   484378 I
e caeRem4.Crem_Contig15   109550 558 -  1794024 I

a score=0.000000
s ce10.chrX              2532902 1660 + 17718866  
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17281215  327 - 21540570 I
e caeSp111.Scaffold582    133625 2551 +   484378 I
e caeRem4.Crem_Contig15   109550  558 -  1794024 I

a score=433.000000
s ce10.chrX              2534562 6 + 17718866 TTAACC
s caeRem4.Crem_Contig15   110108 6 -  1794024 TTAACT
i caeRem4.Crem_Contig15 I 558 C 0
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17281215 327 - 21540570 I
e caeSp111.Scaffold582    133625 2551 +   484378 I

a score=10217.000000
s ce10.chrX              2534568 105 + 17718866 AAAATGAGAGAAGAAAAATGGGA-AATTGGTGACCATGAAGAAGGAGCGAAGAGCAGTTGGAAAGACGAAGATAACTAATGAATGCGGG--AAAAAAGGAAAGATGAA
s cb4.chrX              17281542 105 - 21540570 aaaatggaagaaagtTGAGAAGGGCAAAGGTGACCCTGAAGAAGG-ACAAAGACTAG--GGGAGCACGGGGATAACTAATGAATGCGGGATAGAAAGTTGAAGACGAA
i cb4.chrX              I 327 I 1421
s caeRem4.Crem_Contig15   110114 101 -  1794024 TGGATGTAAAGAAAGAGATGGGAGAAAATGTGACCCTGAAGAAGG-GCAAAGAGCAG-TGAGAAGAGGCAGATAACTAATGAATGCGGG--AGGAAGGAAAAGAG---
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e caeSp111.Scaffold582    133625 2551 +   484378 I

a score=1083.000000
s ce10.chrX              2534673 38 + 17718866 TGGAGAATGAAAGAAATGAATGAGAATA--TATGAAAAAT
s caeRem4.Crem_Contig15   110215 39 -  1794024 TGAAGAA-GTAAGAGAAGGGTAAGAATCATTATGAAATAT
i caeRem4.Crem_Contig15 C 0 I 766
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17281647 1421 - 21540570 I
e caeSp111.Scaffold582    133625 2551 +   484378 I

a score=0.000000
s ce10.chrX              2534711 1399 + 17718866  
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e cb4.chrX              17281647 1421 - 21540570 I
e caeSp111.Scaffold582    133625 2551 +   484378 I
e caeRem4.Crem_Contig15   110254  766 -  1794024 I

a score=465.000000
s ce10.chrX              2536110 53 + 17718866 AAAAAATTTCTCAGTAAGCATGAATCCAAATCTTTTT--GATAATTGAACGAGGG
s cb4.chrX              17283068 55 - 21540570 AAAAAGGTTTTGATAAAAACTGAAGCTAGACCTATttatgacacaaaaaaaaacg
i cb4.chrX              I 1421 C 0
e caePb3.Scfld02_0       3253709 1539 -  4147112 I
e caeJap4.Scaffold18213   257826 1961 +   720316 I
e caeSp111.Scaffold582    133625 2551 +   484378 I
e caeRem4.Crem_Contig15   110254 766 -  1794024 I

a score=51849.000000
s ce10.chrX              2536163  89 + 17718866 AAAAAACA-----AGAAAGTG-----------------ATGAGAAAGTGATTGGCTATCAATTGAAATTGAAATCAGATGTCTTCGTCACCT-----CAAAAAGAGAAGCACATC--A
s cb4.chrX              17283123 115 - 21540570 aaaaaataagcGGAGAAAGTGTTAAAACTAGCAATTAAATGAGAAAGTGATAGGCTAtcaaaagaaattaaaatCAGACG---TCGTCACTTGTacataaaaagagaaacatgggtag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   111020  85 -  1794024 AAAAAACC-----AGAAAGTG-----------------ACGAGAAAGTGACAGGCTatcaaaagaaattaaaatcaGACG---TTGTCactt-----caaaaagagaaacatgag---
i caeRem4.Crem_Contig15 I 766 C 0
s caeSp111.Scaffold582    136176  85 +   484378 aaaaaact-----agaaagTG-----------------ACGAGAAAGTGATAGGCTATCAgatgaaattaaaatcagTCG---TCGtcactt-----caaaaagagaaacatgag---
i caeSp111.Scaffold582  I 2551 C 0
s caePb3.Scfld02_0       3255248  85 -  4147112 AAAAAACT-----AGAAAGTG-----------------ATGAGAAAGTGATAGGCTATCAGATGAAATTAAAATCAGTCG---TTGTcactt-----caaaaagagaaacatgag---
i caePb3.Scfld02_0      I 1539 C 0
e caeJap4.Scaffold18213   257826 1961 +   720316 I

a score=31044.000000
s ce10.chrX              2536252 73 + 17718866 TAAAAGATGAAAAAGG-----------------------CGGAAGAA--------AGAGAATGTAACAGCAAAAAAAAAGCGAAAATGAAAGAGATACAAACAA
s cb4.chrX              17283238 59 - 21540570 caaaaagcggaaga-a-----------------------cgaagaaa--------agaa-------------gaaaaaaagcaaaatgaaagagatacaaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   111105 56 -  1794024 ---aaaatgaagaa-g-----------------------cggaagaa--------agag-------------aaaaaaagcgaaaatgaaagagatacaaacaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    136261 70 +   484378 --aaaaacgaataa-g-----------------------cggaagaatgaaagagaggg--------ggagcgaaaaaatcgaaaatgaaagagataCAAACAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3255333 62 -  4147112 --aaaaaagaagaa-g-----------------------cggaagaa--------agga--------gggaagaaaaaagcgaaaatgaaagagatacaaacaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   259787 77 +   720316 TGAGAGATGAAAGT-GATAGGCTATCaaataaaattattcgaaaaag--------agag-------------aagaaaaatgaaaac-----agaTATTTACAA
i caeJap4.Scaffold18213 I 1961 I 21

a score=7895.000000
s ce10.chrX              2536325 17 + 17718866 AG--AAGCAAGCCGCACG----------C
s cb4.chrX              17283297 29 - 21540570 agaaaagcaagCCGCGCACACACATATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   111161 15 -  1794024 ag--aagcaagcCGCG------------C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    136331 15 +   484378 AG--AAGCAAGCCGCG------------C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3255395 15 -  4147112 ag--aagcaagcCGCG------------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   259864 21 +   720316 I

a score=257682.000000
s ce10.chrX              2536342 462 + 17718866  
s cb4.chrX              17283326 477 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   111176 447 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    136346 441 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3255410 421 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   259885 402 +   720316  
i caeJap4.Scaffold18213 I 21 I 2119

a score=30103.000000
s ce10.chrX              2536804 65 + 17718866 GC-TTGTTACTTTGCACGTAGGAAAAAAAAACAATGAGTGAGCGCG------AAC-GGCGAAAGCAAAGATTG
s cb4.chrX              17283803 63 - 21540570 TCGGTGTTACTTTGCACGTAGAAAAA----------AGTGACTGCGCAACGGAACGGGTGAGAACAAAGATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   111623 60 -  1794024 TC-GTGTTACTTTGCACgtagaaaaa----------aatgagtgcA-AACCGAAC-GGTGAGAACAAAGATTG
i caeRem4.Crem_Contig15 C 0 I 308
s caeSp111.Scaffold582    136787 55 +   484378 TT-TTGTTACTTTGCacgtaaaaaaa----------tttggacGCG------AAC-GGTGAGAACAAAGATTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3255831 53 -  4147112 TC-TTGTTACTTTGCACGTaaaaaaa------------TGAGTGCG------AAC-GGTGAGAACAAAGATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   260287 2119 +   720316 I

a score=-233.000000
s ce10.chrX              2536869 24 + 17718866 GAGATGCGAG--------------CTTGACCAGCTAGA
s cb4.chrX              17283866 24 - 21540570 -GAGTCTTTG-------------CTCTGACCAATAGga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    136842 36 +   484378 --AGTCCGAGAAATATCAACAACTTTTGACCAATTGGA
i caeSp111.Scaffold582  C 0 I 174
s caePb3.Scfld02_0       3255884 31 -  4147112 --AGTCCAAGATCTTTCAACAACCCCTGACCAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e caeRem4.Crem_Contig15   111683 308 -  1794024 I

a score=-132.000000
s ce10.chrX              2536893 54 + 17718866 C--TTTGTTAAAGCAGACTCACGAATCACATAATATTTTGA-ACGGAAATTTGAAAT
s cb4.chrX              17283890 47 - 21540570 caattttcgaagaaag--------gttattttgaaatcag--gaagaaatttgaaat
i cb4.chrX              C 0 I 3267
s caePb3.Scfld02_0       3255915 51 -  4147112 ---TTGGTCAAGAGAGATCC---AATCACTAGAAGATTGGATAAGAAGATATGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e caeSp111.Scaffold582    136878 174 +   484378 I
e caeRem4.Crem_Contig15   111683 308 -  1794024 I

a score=191.000000
s ce10.chrX              2536947 2 + 17718866 GA
s caePb3.Scfld02_0       3255966 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 I 2312
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I
e caeSp111.Scaffold582    136878 174 +   484378 I
e caeRem4.Crem_Contig15   111683 308 -  1794024 I

a score=0.000000
s ce10.chrX              2536949 750 + 17718866  
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I
e caeSp111.Scaffold582    136878 174 +   484378 I
e caeRem4.Crem_Contig15   111683 308 -  1794024 I

a score=86.000000
s ce10.chrX              2537699 23 + 17718866 CCTTTCTGTTCTGCAGGAAATGG
s caeRem4.Crem_Contig15   111991 22 -  1794024 CCTTACAAATCGGTATAGAATG-
i caeRem4.Crem_Contig15 I 308 C 0
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I
e caeSp111.Scaffold582    136878 174 +   484378 I

a score=10818.000000
s ce10.chrX              2537722 102 + 17718866 TCCTCATTATATTCAAAATCAAAATTTTATGAAATAAA---TCTTCTTTTGGTATATACATCTAGTTAAAACCCCAAGGGAATGGAAGTGGTTGCCATTTTGTTT
s caeRem4.Crem_Contig15   112013 103 -  1794024 TCTTACTCTTTCTTGAAA-TGAAGTTTCTTCAGatatatcttcttttcttggGATGTACA-CGGCATATACCCTCGGGGATATCGGATTGGTTGCCATTTTGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    137052 100 +   484378 TCCGCTTCTTACTCaaaattgaagtttcttGAAATAAA---TCTTTTCTTGGTATGTACATCTTCTTAGACCCCTGGGAAAA--GAAGTGGTTGCCATTTCTTTT
i caeSp111.Scaffold582  I 174 I 1836
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I

a score=168.000000
s ce10.chrX              2537824 4 + 17718866 TCTC
s caeRem4.Crem_Contig15   112116 4 -  1794024 TATC
i caeRem4.Crem_Contig15 C 0 I 1710
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I
e caeSp111.Scaffold582    137152 1836 +   484378 I

a score=0.000000
s ce10.chrX              2537828 817 + 17718866  
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e cb4.chrX              17283937 3267 - 21540570 I
e caeSp111.Scaffold582    137152 1836 +   484378 I
e caeRem4.Crem_Contig15   112120 1710 -  1794024 I

a score=1701.000000
s ce10.chrX              2538645 141 + 17718866 AAGAGGAACGGAT--AGtaaataaaaaattattt------aaaaaGAAAAATGACGCAATTAATGGATATAATTGATTTGAAGACAGGGGTAAGGTTGGTAATGGATGAATTAATAAAAAAGATGAGG---AAAATAT---------------------TTAGAGATGTCAAC
s cb4.chrX              17287204 168 - 21540570 aaaaggaatgggagaaacaagtaaaaaggttttgggtacgaaaaagaggaaaaacaaaccaaaTGGATATCATATATTTTACAGCGGAGGTGATAATGG-----GGCGAATAAATCAAAGTGATGGGGTAGAAGACATCGGTTGAAGGGAGCATATGTTTTAGAGTTTCTACA
i cb4.chrX              I 3267 C 0
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeJap4.Scaffold18213   260287 2119 +   720316 I
e caeSp111.Scaffold582    137152 1836 +   484378 I
e caeRem4.Crem_Contig15   112120 1710 -  1794024 I

a score=-3395.000000
s ce10.chrX              2538786  70 + 17718866 AAGCA---CATTAGATTAAACGGATAA-----------------------CATTTTCAGGTAAAA-------------TTCAAAGTGC-TACGACGTTGCAAGTTTT-----------------CGG
s cb4.chrX              17287372 127 - 21540570 AAACAAGATGTTAGAAATGATTGATGGAAATCCATTGAAACCTTTGGACCCACTTGAAGGCaaaaaaaCTATACGAAATTCAAAGGGCATTTCACGtagcatttttttctcatctcgAAAGGGTCCA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   262406  59 +   720316 AAACA---AATTTACCAAAGcggaaaa-----------------------catttgaaaataaa-------------------------taacaggatgaaaatttt-----------------cga
i caeJap4.Scaffold18213 I 2119 C 0
e caePb3.Scfld02_0       3255968 2312 -  4147112 I
e caeSp111.Scaffold582    137152 1836 +   484378 I
e caeRem4.Crem_Contig15   112120 1710 -  1794024 I

a score=1000.000000
s ce10.chrX              2538856 1 + 17718866 C
s cb4.chrX              17287499 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    138988 1 +   484378 C
i caeSp111.Scaffold582  I 1836 C 0
s caePb3.Scfld02_0       3258280 1 -  4147112 C
i caePb3.Scfld02_0      I 2312 C 0
s caeJap4.Scaffold18213   262465 1 +   720316 c
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   112120 1710 -  1794024 I

a score=78273.000000
s ce10.chrX              2538857 144 + 17718866 TCCCACACATACGCATACACACACTGATTTTATTATCCAATGCTTAAGAAT----------AGAAATAAATGAAATGTGAACCAGATGAAT--CAG----------AGTGTGCATCTTTTT----TATGATTGTGGTTT-----------GAGTAACAATGCTTC------TTGCAGTGTGA----TAGAT
s cb4.chrX              17287500 173 - 21540570 TCTCATACATATGAG--CACACACTGGTTTTATTATTCGTTGTAGAGGGAAAAGGGAACCCgaaattgaatgaaatgtGAACCAGATGAATCACAGACACACTCACAATGTGCATCtttttttAATGGTTTTGTGGTTTTGAGAAAGACCGAGTAACAATG------------GCTAGTGGT----GATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   113830 149 -  1794024 TCCCACACATACGCG--CACACACTGATTTTATTATCTATTGTTGAAGaataa--------aaagttgaatgaAATGTGAACCAGATGAATCAcaa----------aatgtgcattttttt----tattattgtgGTATTAA--------GAGTTACAATGCTTC------TTGCAATCTGA----TATAT
i caeRem4.Crem_Contig15 I 1710 C 0
s caeSp111.Scaffold582    138989 140 +   484378 TCCCACACAAACGCGTACACACACTGGTTTTATT-----ATGTTGAAGAAT----------GggattgaatgaaatgtgAACCAGATGAATCACAC----------AATGTGCATCTTTT-----TATGATTGTGGTCT-----------GAGTAACAATCCTTC------TGGCAGTTGTT----TGGCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3258281 146 -  4147112 TCCCACACATACGCT--CACACACTGGTTTTATTATCCAATGTTGAAGagt----------gaaattgaatgaaatgtgAACCAGATGAAT--CAC----------AATATGCATCTTTT-----TATGATTGTGGTTT-----------GAGTAACAATGCTTC-----TTGGCAGTCTGCAAGACAGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   262466 131 +   720316 -------cagGACCT--CTTGCACTGATTTTATTAGCCAATATTGAA--------------GAAACTGAATGCA-----AACCAGATGAAT--CAC----------AATGTGCTTCTTTT-----TGTGATCGTGGTTT-----------GAGTTACAATTCTTTGCTTGCTTGCAATGTGA----TATAT
i caeJap4.Scaffold18213 C 0 I 1551

a score=25167.000000
s ce10.chrX              2539001  93 + 17718866 ATTTATTTCAATTGGGAAAAGAAACTGAG-----------GAGGGAAATACGAGAG----TTGACTC--ACATATTACAATTGATAGATTAGAGAGTTTGAATTGGTCTC
s cb4.chrX              17287673  93 - 21540570 ATACATTTCGGTTGAGTACTCTAA----------------GGGTGGAGCTGAGAGGACA-CTGAGTCATACAGATTGGAAATGATAGATTAGAAGTTTTGCATGGGTCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   113979  85 -  1794024 ATATACTTTTGTCAAACAAGTGAA----------------AAGC--AATAGAAGAGACAGTTGAGTCACACAGAT------TGATAGATTAGAAG-TTTGAATGGGTCCC
i caeRem4.Crem_Contig15 C 0 I 509
s caeSp111.Scaffold582    139129 108 +   484378 ATATATTTCAATCGAGAActggaacaagaaaaagataaatgagATGAGCACGATAGTTGGTTGAGTC--ACAGATTTAAAATAATAGATAAGAAAGTTTGGATGGGTCCC
i caeSp111.Scaffold582  C 0 I 529
s caePb3.Scfld02_0       3258427 108 -  4147112 ATATATTTCAATGGAGCActggaacaagaaaaagaaagatgaatgAAGGAAGAAAGTTGGTTGAGTC--ACAGATTGTAAATGATAgataagaagttttgaatgggTCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   262597 1551 +   720316 I

a score=562.000000
s ce10.chrX              2539094 5 + 17718866 AAGCG
s cb4.chrX              17287766 5 - 21540570 TTGCG
i cb4.chrX              C 0 I 781
s caePb3.Scfld02_0       3258535 4 -  4147112 -AGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e caeSp111.Scaffold582    139237 529 +   484378 I
e caeRem4.Crem_Contig15   114064 509 -  1794024 I

a score=151.000000
s ce10.chrX              2539099 3 + 17718866 ATT
s caePb3.Scfld02_0       3258539 3 -  4147112 GTT
i caePb3.Scfld02_0      C 0 I 657
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e cb4.chrX              17287771 781 - 21540570 I
e caeSp111.Scaffold582    139237 529 +   484378 I
e caeRem4.Crem_Contig15   114064 509 -  1794024 I

a score=0.000000
s ce10.chrX              2539102 1004 + 17718866  
e caePb3.Scfld02_0       3258542  657 -  4147112 I
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e cb4.chrX              17287771  781 - 21540570 I
e caeSp111.Scaffold582    139237  529 +   484378 I
e caeRem4.Crem_Contig15   114064  509 -  1794024 I

a score=401.000000
s ce10.chrX              2540106 8 + 17718866 ACGTATTT
s cb4.chrX              17288552 8 - 21540570 ACAAATTT
i cb4.chrX              I 781 C 0
e caePb3.Scfld02_0       3258542 657 -  4147112 I
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e caeSp111.Scaffold582    139237 529 +   484378 I
e caeRem4.Crem_Contig15   114064 509 -  1794024 I

a score=307.000000
s ce10.chrX              2540114 4 + 17718866 TTCA
s cb4.chrX              17288560 4 - 21540570 CTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   114573 4 -  1794024 TTAA
i caeRem4.Crem_Contig15 I 509 C 0
e caePb3.Scfld02_0       3258542 657 -  4147112 I
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e caeSp111.Scaffold582    139237 529 +   484378 I

a score=-1430.000000
s ce10.chrX              2540118 35 + 17718866 TATT-----TACAAATCAT--CGGGTTGGCAAGGCAAGTACA-----
s cb4.chrX              17288564 40 - 21540570 TATTgtttatacaaaaaat--aggGTT-----AATGGGAACACGGTg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   114577 32 -  1794024 TATT-----TACAAATCATTAGGGGTT-----ATCAATTACA-----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3259199 30 -  4147112 -----TATATACATTTCAT--CGATGC-----GGGAAATAca-----
i caePb3.Scfld02_0      I 657 C 0
e caeJap4.Scaffold18213   262597 1551 +   720316 I
e caeSp111.Scaffold582    139237 529 +   484378 I

a score=-7807.000000
s ce10.chrX              2540153 67 + 17718866 TGTACAAATAAATCTGCATATTTCATTTATCAAATTTCCGTTT-------------GTT------------TTTTCTCTTGAGCTACTATTT------
s cb4.chrX              17288604 66 - 21540570 tgtacaaaaaattt-------ttaaatca---gagATTCACTTCTCGTCATCCTC--TT------------CCGGCTCTT--GCTCTTTTCC------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   114609 68 -  1794024 --TATGCAAAATTC-------TTGTTTCGTC-GAATTTGATGCCACctgattttttatt------------atttctctt--cttcttcttt------
i caeRem4.Crem_Contig15 C 0 I 5
s caePb3.Scfld02_0       3259229 71 -  4147112 --tacaaaaaagtc----aattagTATTATTATATGTTCATCTCTTTTGAAGatc-act------------tctcttctt--tctcctgTTC------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18213   264148 87 +   720316 TGTATAGATAAAtc-------tttatttgt--ttttctaactttttgTAGTTATTGGTTCGTTTCCGGTCGTTTCCTCTT--TCTCTTTAGCAATTTT
i caeJap4.Scaffold18213 I 1551 C 0
e caeSp111.Scaffold582    139237 529 +   484378 I

a score=72728.000000
s ce10.chrX              2540220 336 + 17718866 TATCATCATCATCTTTCTCAAT-----TGGAATGTCCTCCGGGTCAC---CATCACGAATTGATTTCTGGTGCTCCATCATCCTTCGCTTAGCCGTTGCTCCACTCTCGACTCCGACATTCTTGATAGATCTG-AACTTGGGTGAGAT----AGAAAAAAAAC---GACTCTCGATTGCATTGACTCACTCATTTGAAATATTTCTTTTTCGTTTTATTGCCCGCAGGTTTCCGGGATATTTGAACAGGCGCTCTTCGTTGTTCTCGTCTTGTTTTTCTGATCGGAGTTT---AGCATTTTCAGAAGATGA----------------------TA-----------------GTAGTTTCTGAAAATCAAAATTGA------------------GTCAAAAATGTTTATAAA
s cb4.chrX              17288675 379 - 21540570 CCTTGTTATCAGCTTTGCTGATCT--CTGATGAACCCTCGGCGTCTTCTCCCTCGcgaattgatttttgatgcgCCATCATCTTGCGTTTGGCAC------------CAACACTTGAGGTCTTGTTGgatctg-agat--------tt----tgaaaaatgattttgattttcagaatcgatgACTCACTGGATTGGAAGGTTCCGCTTGCGTTTCACAGCGCGAAGGTCTCCTGGATACTTAAAAAGACTGTCCTCGTTGGTCTCTTCCTCTTTTGGTGGAACTGGTGTACGTTTGTTCTGGAAGGAAAGagcaaattgttttttaatcctttgttttttgagaatcattATTTCATTCAGGAATCAATGCTCAATTTA------CAGTaacggtcaataagatatataaa
i cb4.chrX              I 5 I 54
s caeRem4.Crem_Contig15   114682 343 -  1794024 tatcgttatcttcttttgcgatct--ctGGTGGTCCCTCTGAGTCTG---CCTCACGGATTGATTTTTGATGCTCCATCATTTTTCGTTTGGCCC------------CGATACTGACATTCTTGACAGATCTG-AAAC------AATtaagatgagaaaaaatattggaatgcAA---TGATGACTCACGGAGTAGTTGGGTTTCTTTTGCGTTTCACTGCTCGCAAGTCTCCCGGGTACTTGAACAGACGGTCTTCATtgttctcatctttttttggtGCTGCTGGTTT---CTCAGTCTTGGATGAGAG----------------------TATTTTCT-----------TGCCATTCTGGATAACAAAATCGATTTG------CGAAATAGTTTCagtaaaaatgtaat
i caeRem4.Crem_Contig15 I 5 I 4
s caeSp111.Scaffold582    139766 292 +   484378 ------TATCATTTTTAGCGATCT--CTGATGGACCTTTTGTCTCGT---CATCACggattgatttttgatgctccatcattcttctttttgtcg------------cCACACTCGTATTTTTGACTGatctataaaa------aatg----agatgatagaa---gaaactattttctgATGACTCACTGATTCGGTGggttcctctttcttttcacagCTCGAAGGTTTCCAGGATATTTGAATAGTCTATCCTCGTTGTTTTCATCTagttttgtttctgttgTCTT---GACGGATGGTGATGAAAG----------------------CAAATCAG-----------TTGGCTTCTGGA------------------------------------------------
i caeSp111.Scaffold582  I 529 C 0
s caePb3.Scfld02_0       3259311 294 -  4147112 ------TCTCTTCTTTAGCGATCT--CTGATGGACCTTCAGCCTCTC---CCTCGCGAATTGATTTCTGATGCTCCATCATTCTTCGTTTCGATG------------CAGCACTGACATTTTTGACTGATCTG-AAAC------GATt----agaaataagaaattgatACAACATTTCAATGACTCACTGATTTGGTGGGTTCCTCTTGCGTTTCACGGCACGAAGCTCTCCTGGGTACTTGAAGAGACTTTCCTCAACGTTCGCTTCAAGTTTAGTGGCTTCTGGAGT---AGCAGGTTTTGGAGCCAA----------------------TAACTCCT-----------TCTGTTTCTGAA------------------------------------------------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18213   264235 306 +   720316 ---------TATCTTTATCGAGTTGATCGGTGATTCCTCAG---CTT---CTTCGCGAATCGATTTCTGATGCTCCATCATTCTTCGTTTCAGGC------------TGAGATTT---TTTGTGGGAGACCTG-AAAA--------TT----AATAGGTGAGACTGGGCAAAAAAGACAAATGACTCACTGAGTTGATAAATTCCTCTTCCGTTTGATGCCCCTCAAGTTTCCGGGATATTTGAACAAATGGTCCTCGTTGTTCTCATCC--TCCTGTTGTTTGCCGCAT----------------GAAAC----------------------GATTTTCG-----------AGCccttctgaaaataaatttagaGTGGAGGTATCaaaaaaaGTCAAG------------
i caeJap4.Scaffold18213 C 0 C 0

a score=-7279.000000
s ce10.chrX              2540556 39 + 17718866 TTATTTGGGGCTTGTGTACAGGGGGCGCTTGACAATTGC
s caeRem4.Crem_Contig15   115029 30 -  1794024 tCACTAGACATTTAT---------ATGGTTATCAAGTGT
i caeRem4.Crem_Contig15 I 4 I 7
s caeSp111.Scaffold582    140058 15 +   484378 ------------------------ATGTAGAAGgtgttt
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3259605 15 -  4147112 ------------------------ATGTTGGATGATTTT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   264541 18 +   720316 TTATTT------------------TTGCTTCGAGGC---
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17289054 54 - 21540570 I

a score=-27800.000000
s ce10.chrX              2540595 48 + 17718866 TGTTTGGTAA-----------TTGAAATTACGTCAATT--GCTCAAATTGCCAAAAA-----TTAT
s cb4.chrX              17289108 48 - 21540570 cgttTGTTAA----GTTTCA-----GATCCCTCCAAAATCGTTTGAAGTTGCAAAAT---------
i cb4.chrX              I 54 C 0
s caeRem4.Crem_Contig15   115066 51 -  1794024 CGTCAGTTTA----GATTCACAAGTGATCACTGAGCAA--GAttagaaatgtaaaaa---------
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    140075  9 +   484378 -gttgaatat--------------------------------------------------------
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3259625 56 -  4147112 -GTTGTATAATCAAGATACACATGAAAGCTAATCTTCA--ACtt---cttataaaaaatcat----
i caePb3.Scfld02_0      I 5 I 33
s caeJap4.Scaffold18213   264559 14 +   720316 ------------------------------------------TTTAGCGATTAAAA----------
i caeJap4.Scaffold18213 C 0 C 0

a score=-14210.000000
s ce10.chrX              2540643 38 + 17718866 AGAAACCAGAGTTTTAAAAGTGCGTGTGACTAAAACCG-----
s cb4.chrX              17289156 32 - 21540570 --AAACC----TCTTGGAAACATTCGTTCACgtaactg-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115117 18 -  1794024 --aaa------------------tgttaaacCTAGATG-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140084 19 +   484378 -----------------aaaaatctaTTTACGGCGT-------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   264573 31 +   720316 ------------CGTAGTCCTAATGGTCGGTTCAGCTGAAAGA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3259681 33 -  4147112 I

a score=-30201.000000
s ce10.chrX              2540681 64 + 17718866 TAACAAAAACCAAAAATTT-----------CCAATTTCTGTTCAGCCATTATTTCA--TGCCTTTATTTTAAAATTG-----
s cb4.chrX              17289188 70 - 21540570 tttcaaaatcccCAGTTTTTCAACTATTAATCGACTTCCGGAAGACctgtttt-------ttcatatttcagtataa-----
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig15   115135 21 -  1794024 C-----AATTCACAGTTTT---------------------GAGAACC-----------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140103 60 +   484378 --TCAAAAACTACCCATTT--gtcatattttttatttctagaaAGTG-------------TTGTCGATTCAGAGTCA-----
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3259714 38 -  4147112 TTACAATaaccaa--------------------atttccaga-------------------tgatcATTGAGCAGAA-----
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold18213   264604 51 +   720316 -------------------------------TGACCTCAATCGCACACTTACTTCAGCCGATGATAAGTGATTATAAACGTT
i caeJap4.Scaffold18213 C 0 C 0

a score=-11323.000000
s ce10.chrX              2540745 42 + 17718866 --TATATTATACAAACGTGGTATTAATTT--------TTAATTTGCTGGATT
s caeRem4.Crem_Contig15   115156 28 -  1794024 ---------TTCAA--TAGATGTTGGcaca-------tcaattttt------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140164 36 +   484378 --CGTGTTTTATGA--TCAACGTTA------------CTAATTTCGTAGATA
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3259752 31 -  4147112 ---------TATGAACACAAAAGTG------------TGAATTAACTTGAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   264655 41 +   720316 TGCGCGTCattaga--aaaacatttatgaAAAGTCGTTTAATT---------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17289258 44 - 21540570 I

a score=48475.000000
s ce10.chrX              2540787 279 + 17718866 A-----------------AAAATGGTTATTTCCAAAGGCTAAGAATACAAAAATATTTCACGTTTTGTACATTTGGAAAT----------------------------------------------------AGGGCAAGTTGTCATCATACTACACTTTTTAT-------------------------------------------AATCAAAGTAA-------AGAA-----CAACTCACGTCTTCTTCACAGTGGACAAAAATTGAAAATTGTCTCGTAAATCGTTGCAGTCGCTTCATCTTAACCACTGCTTCTTCCATAGTTGGTCGATGGTATGTAGAAGTAGTAGGGCAATGCTGATCAATTTCGGCCATA---------------------A-------------------TGAGCTGAAAA----------ACGAACAAATAAT
s cb4.chrX              17289302 414 - 21540570 aaaactaggaattttaaaaaattctgtgaatgcaaagtttccaaacTAAGACTGTTTTacatcttccaaaattttcaaagcggtCGAAAACTCGACGGCCGAGCTCCCGACTCCCGAAAATGGTCAAAGCTGCTaaaaaatcaacggaaaaatacgtt-tttgtatatcttactACTGTAACCAGagttccaaatttgagccttttgaatgaacaaaaatcacgaaaaagttttgaactcaCCTCCTCATCGGTATGaataaaaatcgagaattgtCTCGTGAATCGATGGATTCTCTTCATCTTCACAACGGCACGCTCTATAGCTGGGC---GGAAAGATGATGTAGTGGGAACTTGTTGGTCCAGCTCAGCCATC--------TCTGCGCaaaaaaa-------------------TGAGCTGGAAA--------ATAATTGGAAATAAT
i cb4.chrX              I 44 I 62
s caeRem4.Crem_Contig15   115184 234 -  1794024 ------------------------------------------------------------------------------------------------------------------------------------caaaaaaattga---------------------------------------------------------------aacaagcaGAA--CACTATAAAATATCCGGCTCACCTCATCTTCACAATGaacgaaaattgagaattgtcTCGTGAAGCGTTGAAtcctcttcattttcacaaCAGCCTCCTCCATGGTGGGTCGATGGAAAGTTGATGTAGTAGGAAGATGTTGATCTAGCTCAGCCATTtgggtgtgtgtgtgtgtttgaA-------------------TGAGCTGAAAAGA---AGTATACTGATGAATCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140200 289 +   484378 ------------------ACAAAATTCATACCTGGTCAGTGAGCAAAGAGAACAAATTAAT-------------------------AAAACTCGACT-----------------------------------AGAAAACTTTAAGGTAGTTCTACTCTGTTTCT-------------------------------------------AACCCACAAAA-------AGACAATCTTTACTCACCTCTTCTTCACAATGcacaaaaatagagaattgTCTTGTGAAGCGTTGcaatctcttcattttaaCAACAGCTTCTTCCATTGTGGGTCGACGGAAGGTCGATGTAGTGGGAAGATGTTGGTCCAGCTCAGCCATT--------CGTGC-----ACAA-------------------TGAGCTGAAAAGA----GTATACTGATGAGTCGT
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3259783 273 -  4147112 ------------------ATATATATCATACTCCTATtgtcaaaactaaaaataattttat----------------------------------------------------------------------------acATTACGGGAAAGTCACCTAATTTGt-------------------------------------------gattcaggaaa-------aaagtacTTTAGCTCACCTCATCTTCGCAATGcacaaaaatggagaattgtCTGGTGAAGCGTTGGagtcttttcattttgacgaCTGCTTCTTCCATTGTGGGTCGGTGGAAGGTCGATGTAGTCGGAAGATGTTGGTCCAGCTCAGCCATT--------CCTTT------CAA-------------------TGAGCTGAAAAGA---TGTATATTCATGTATCTT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   264696 260 +   720316 --------------------------------------------CCAAATGGTCGTCTGGC-----------------------------------------------------------------------TGGATCCATTG----------------TGTGC-------------------------------------------AGcaacaggaa-------aaaaa----gaacaaaccTCTTCCTCGCAATGAACGAAAATAGAGAACTGCCTTGTGAAGCGTTGCAACCTCTTCAGCTTCACCACTGATTCTTCCATAGTCGGACGATGATATGTTGATGTAGTTGGTCGGTGTTGGTCTAACTCAGCCatt--------gaaacagaaaacaaagGTGAAATATGGATGTGCTGCGCTGGAAAAACTGATAGTACAGTTAAATAAG
i caeJap4.Scaffold18213 C 0 C 0

a score=8417.000000
s ce10.chrX              2541066  93 + 17718866 ACGCGAGACATGTTCATCT--------TGGGGGTGCATAATCGTATTAT-TTATAAAGG-GCAAAC----AATGTCTACGAGATGGAATAAGTGTCAAAGAAAAATG
s caeRem4.Crem_Contig15   115418 105 -  1794024 -AATTATACATGTTCCTCTTGAAGATGTGGGTGTGTATAATTGTGTTAGTTTATAAggtcagaaaaagagaatata-aaGAGATTTGAGGAGTGTAGGAGGAAGATG
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    140495  89 +   484378 ---ATGTACATGTTCCATT----GA-----GGGTGGATAATCATGTTAG-TTTGAAGGGCACAAGA----AATGGC-AAGAGATTCAAGAAGTGTCAATGGGAAATG
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3260061  90 -  4147112 ------TACATGTTCCTCT----GAGATGTGGGTGTATAATCATGTTAG-TAATAAGGGCGCAACA----AATATA-ACGAGATTTGAGGAGTGTGAAAAAG-GATG
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   264956  77 +   720316 ----ATGGGATGTTCCACT----ACTATGTGAGTG-ACAAGTATATT---TTGAATGGGGAggaaa-----------aaaaggatggataaat-------aaagatg
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17289716  62 - 21540570 I

a score=29672.000000
s ce10.chrX              2541159 115 + 17718866 ATAGTGGCGGAAAAAGAACGAGAGAAAAGAGC---G-----AGAAATGTCACTTCTCTCA-------CTTCTCGCAACAAGTTGGTCAGCGAGCTGATCACT-CGT---AGAGTGGAGCAATCAAAG-ACAAA---------CG
s cb4.chrX              17289778 121 - 21540570 -----ATCATG------ACaaaaaaaTAACCC---GAAGGAAGAAATGTCAGTCTACTC--------TTTCCCTCCTCGAGTTGGTCAACGAGCAGATCATTTTTCCGGGACGAGAAGAAATCAGAG-AGAAACCCCCTCGGCG
i cb4.chrX              I 62 C 0
s caeRem4.Crem_Contig15   115525 101 -  1794024 -----AGcatgaaga-aacaaaaaaaataccC---G-----AGAAATGTCAGTCTA----------------CGCAACAAGTTGGTCAACGAGCAGATCACTGCAC---ggagagaaaaaatcaaag-aaaac---------cG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    140584  98 +   484378 ---ATAgcagg------aagaggaagatgtCT---G-----AGAAATGGCAGACTA----------------CGCAACGAGTTGGTCAACGAGCCGATCACTtctc---aaagagaaaaaatcaaag-aaaac---------cG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260151 102 -  4147112 ---ATAGCAGG------AAGCGGAAAAAACCCCGGG-----AGAAATGTCAGTCTA----------------CGCAACGAGTTGGTCAACGAGCAGATCACTTCCC---AGagagaagaaatcaaagaaaaac---------cG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   265033 107 +   720316 ---ataggcga------aaagaagataaatcg---gaaaaaagaaatgcCAGTCCACTTGACACCACACCCGGACCCCGGTTTGGTCGATGAGCATGTTA---------------gagaaatcaaag-aaaaa---------cg
i caeJap4.Scaffold18213 C 0 I 17

a score=4404.000000
s ce10.chrX              2541274 7 + 17718866 GAATTTT
s cb4.chrX              17289899 7 - 21540570 GAATGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115626 7 -  1794024 GAATGCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140682 7 +   484378 GAATGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260253 7 -  4147112 GAATGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   265140 17 +   720316 I

a score=27558.000000
s ce10.chrX              2541281 139 + 17718866 AGAGGCAAAA---------TCAACAAG------AAAGGTCATATGTTACAATGATG-ATAAAAGTCATTACTCTACGTTTCGTTGTCTTTCACTGCATTTCTTGTTTCGAGTCAATCTT--------------TAAGCCTTCCTGATTTTCAA---TTATTGAAACTGATAA
s cb4.chrX              17289906 125 - 21540570 AC-----ACA---------TCAACACG-----AAAAAGTCATATGTTTCAATGAT--GAGTGTGTCATTACGTTGAATTTCATTACATTTAATGTGTATGAG----CCGAATCGACCCCGGTTTC-----------------CTGatttgcaattttc-----aactgataa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115633 138 -  1794024 TCAGGCAACA---------TCAACACG-----AAAAAGTCATATGTTTCAGTGAT--AGCGGAGTCATTACGTTACATTTCATTACATTTTATTTCGATTCG--TTTCGAGTCAACCCTGTGCTC---TCCA-GCAGT----CTGATTATTAA---TC-----GActgataa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140689 144 +   484378 ACAAGCAACA---------TCAATACG-----AAAAAGTCATatgtttcaaaga---aaaggtGTCATTACGCAACCCCTCATtacattcaatttcttgtcA--TTTCGAGTCaaccctcttttt---tccagtcaCTCTTTCTGATTCCCAA---TCAT---AACTGATAA
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3260260 128 -  4147112 AC--------------------ACAAG-----AAAAAGTCATATGTTTCAATG----ATAGGTGTCATTACGTTACATTTCATTACATTTTATTTCTTGTCT--TTTCGAGTCGACCCTCTTTT---------CCAGTCTTCCTGATTTTCAA---CCGGC-AAACTGATAA
i caePb3.Scfld02_0      C 0 I 82
s caeJap4.Scaffold18213   265157 149 +   720316 ---GGGGGCAGATTCTCTCCCGACCAGCCGGTAAAATGTCATATGTTTCAATAATATTTAGTTGTCGTT--------TTCCGTTTTATTTTAAGAAGACTCGGTTtgtgcatcatttttttttctttcttcattttctttccATGATTTCTAG------------CTGATAA
i caeJap4.Scaffold18213 I 17 C 0

a score=-796.000000
s ce10.chrX              2541420 8 + 17718866 CGGCAAAG-
s cb4.chrX              17290031 8 - 21540570 ggACATGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115771 8 -  1794024 aagaaaaa-
i caeRem4.Crem_Contig15 C 0 I 71
s caeSp111.Scaffold582    140836 8 +   484378 CGACAAAA-
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   265306 8 +   720316 -GAAAAAAG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3260388 82 -  4147112 I

a score=-7881.000000
s ce10.chrX              2541428 51 + 17718866 TACCGGTCTTCTCATTTTAATTTTC--CTGT---CTTAGAAAA-----------------------------------GTTTTTAACATCA------
s cb4.chrX              17290039 77 - 21540570 ---------TGACATTGAAGTATGG-TGTGTaaatatagaaaaagaaatgggagaaaaaatgaaaaacgacATGATGGGCTCCTA----TA------
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold582    140844 60 +   484378 ------TGTTTGCATTGAAAAGTGG--GTGTaaatatagaaaagaaaa-----------------------atgatgggCACTTCAAATTA------
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold18213   265314 60 +   720316 ------TGAATACAtgtaaatatgtatgtataagAATTGAGAA-------------------------------TTGAGAGTTGAGAATTAAGAATG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3260388 82 -  4147112 I
e caeRem4.Crem_Contig15   115779 71 -  1794024 I

a score=192.000000
s ce10.chrX              2541479 3 + 17718866 ACG
s cb4.chrX              17290134 1 - 21540570 --g
i cb4.chrX              I 18 I 2
s caeRem4.Crem_Contig15   115850 1 -  1794024 --a
i caeRem4.Crem_Contig15 I 71 I 2
s caeSp111.Scaffold582    140908 3 +   484378 GCG
i caeSp111.Scaffold582  I 4 I 4
s caeJap4.Scaffold18213   265374 3 +   720316 GTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3260388 82 -  4147112 I

a score=5705.000000
s ce10.chrX              2541482 44 + 17718866 AATCAAATGAATTT----TTT-CAAG--ACGATGC----TAGAATATGTCAAATA---------------
s cb4.chrX              17290137 47 - 21540570 aatctGATAAACtcctctttt-tgaattttga-------tggCATAAACAAGAAC---------------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   115853 50 -  1794024 aatctgataaactc----ttt-tgagaaatgaaagagGGAGGCATAAACAAGAAC---------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    140915 44 +   484378 AATCCTATAAACTC----TTT-Tgaggaatggaag----aaaaataaacgaGA-----------------
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3260470 47 -  4147112 AATCTGATAAACTC----TTTCCGAGGAATGAAGG----CGATATAAACAAGAGC---------------
i caePb3.Scfld02_0      I 82 C 0
s caeJap4.Scaffold18213   265377 61 +   720316 Aatcaaaattatta----ttt-tgaaCAGCGGAGG----TGAGAATGACAagaaaatatgtacataaata
i caeJap4.Scaffold18213 C 0 I 43

a score=1466.000000
s ce10.chrX              2541526 29 + 17718866 TTTTAGA--------------TCATCGGACTGGAACCACA----TGC
s cb4.chrX              17290184 47 - 21540570 ATACGCTTTATGTTAAAGCGGATATACCTCTGGAGACATCCCATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115903 29 -  1794024 ATACACC--------------ACATACACCTTGAGACACA----ATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140959 22 +   484378 ---------------------ACATAGACCTTGAGACACG----ATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260517 29 -  4147112 ATACACC--------------GCATACACCTTGAGACACG----ATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   265438 43 +   720316 I

a score=96419.000000
s ce10.chrX              2541555 252 + 17718866 AAAGGTAAATACATCA-GGAA----------GCTTCATG--------------AAACTT---TTATCAGTTATTCATGAATATTCGTTGCGAACATTAATCACC-GGACGGT-TGGTTTAGCTCACGACAT-----GACATACATTTAAAAATAC--GAAAAAA------------AAA--CAGCATTCGAGGC-CTGAATCAAATAAA---TGACTCGAATAGG-----AAAT----------------------------TTGGCAAACCA---CTGGATCA-GTGCG------------GTGTAGTCG------------TTTGACGAATAATGGACAATGTTTGCCGAAAAGGTTGGATTTCAA
s cb4.chrX              17290231 301 - 21540570 AATGACAGAT-CATCT-GGAATATATCCTATGCTTTGGGAaggaaaaaaaccgaaaccAGGCGCATAACTTATTCATGACTATTCGAAGCGAACATTAATCACC-GGATGTTGGAGTTCAGCTCACGACAT-----CATATACATTTAAGATCAAGttagaaaataagaagataaaaatgctgaaatgcgtgtg-tgt-gtgtgggtaT---TGA---AACT----------------ATGCTGG----------CCTTGAGTCGGAAGGGTa---aaaaaaCACAA---------------GATCAGCCG-------CCGTTTTTTACAAATAATAGATGATGTTTGCCGAAAAGGTTGGATTTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   115932 288 -  1794024 AATGACAGAT-CATCT-GGAAGATATCCACCGCTTCACG------ATAAACCGAAACCA---CCATTTTTTATTCATGACAATTCGAAGCGAACATTAATCACC-GGGTGGT-GAGTTTAGCTCACGACAT-----CATATACATTTAAGatcag--caaaaaa-----------------tggaatgcgTGTc-tggaaaatgatgat---gga---aactgaa-----aaattgaaataacgGGACCAAATTTCCTTAGGTTGGCCAAGAA---AAAGATCA-GA---------------GTGTAGTCG------------TTTGACGAATAATAGATGATGTTTGCCGAAAAGGTTGTATTTCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    140981 304 +   484378 AATGACAGAT-CATCCCAGGAAATATCCACAGCTTTTTT---CCGCCCAAACGAAACCC---ACATATTTTATTCATGACAATTCGAAGCGAACATTAATCACTAGGACGGT-GAGTTCAGCTCACGACAT-----CATATACATTTAAGatcat--cgagaaa------------aaaaccggAATGCGTGTCTTGAAACCCAATGATAtctaa---aactgaa-----aaatcgaaataacGGGACCAATCTCACTTTGGTTTGACAAGAA---AGAGATCA-GAGT-------------GTGTAGTCG------------TTTGACGAATAATAGATGATGTTTGCCGAAAAGGTTGGATTTCAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260546 301 -  4147112 AATGACAgat-catccaaaaaaatatccAAAGCTTTCGG----CGCCAAAACGAAACAC---GCATCTTTTATTCATGACTATTCGAAGCGAACATTAATCACC-GGACGGT-GAGTTCAGCTCACGACAT-----CATATACATTTAAGATCac--ggaaaga------------aaaactgaaatgcgtgac-tgaaaaccgatgatatctga---aaatgaa-----aaatcgaagtgACGGGACCAATCTTTTCCTGgtttgacaaaaa---agagatca-gAGT-------------GTGTAGTCG------------TTTGACGAATAATAGATGATGTTTGCCGAAAAGGTTGGATTTCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   265481 268 +   720316 ------------------------------------------------AAAGGAAAGTA---AGGCAACTTATTCATGTCTATTCGG---GAACATTAATCACC-AAACAGC----------TCACGACATGTACCTACATACATACATGACCAA--TTCAAAG--------------------CTTATGCGGC-GGAAATGtggcaaaaattca---aacgaaatctccagaaaaaaaaacatagacTAATGT--------TCGGAAACGCGCTCCGAAATCA-AATTAAGACGGAATGCTTGTTAGTTGATCGTTTccttttttgaagaataataaGTGATGTTTGCCAAAAAGGTTGGATTTCAA
i caeJap4.Scaffold18213 I 43 I 918

a score=3384.000000
s ce10.chrX              2541807 17 + 17718866 ACACGCATTTTTG--------GGCT
s cb4.chrX              17290532 16 - 21540570 CC---TCTCCTTATG------GGCT
i cb4.chrX              C 0 I 2942
s caeRem4.Crem_Contig15   116220 19 -  1794024 ACATGTCTTTTTCTG------GGCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    141285 25 +   484378 ACATGTCtttttttAGTGGAAGGCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260847 22 -  4147112 ACATGTCTCTTTTTAAGG---GGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   265749 918 +   720316 I

a score=21479.000000
s ce10.chrX              2541824 143 + 17718866 --------TTAGAAAGACTTAAAAAGAAGCAAATACGTCCGGCTCACACGATCC--GTGAGCATCTATAAACATCATTTCGTTGTTGAGACTACTTTGGATTAAACTCGTGATGTTTATCACGAATGGAGAAAGGATTACATG-AAAAGTCAAG
s caeRem4.Crem_Contig15   116239 143 -  1794024 TTAGCTTCTCGGCACGGATAGAA--------AAAACGTCTAGCTCTCGCTAACTCTGTAAGGAATCAGATTCATCATTTTGTTGTTCA---GACTTCGGATTATACTCATGATGTTTATAAGAAACTAAGAATGGATTATGTGAAAAAGTCGAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    141310 135 +   484378 --------TCGGATCAAATGGAATA----TGAAAGAAAGTGGTC----GGATTCTGGTGAGAAATCAAAGACATCATTTTGTTGTTGA---TACTATGGATTATACCCGTGATGTTTTCCTTAAACTGAGAGAGGATTAAGTGAAAAAGTTAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3260869 138 -  4147112 --------TTCGGCGGaatggaatt----aaaaaaagtcTGGTTTAGAGCTTTCCTGTAAGGAATCAAAGACATCATTTTGTTGTCGA---TACTTTATATTAGACCCgtgatgttttca-aaatctttgaaaggATTAGATAGAAAAGTCAAG
i caePb3.Scfld02_0      C 0 I 1908
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=-9230.000000
s ce10.chrX              2541967 204 + 17718866 ----------------GGGAGTCTGGAATTCGAATGCATTTTTGAATTTCGTTTGAATCTTGCTTTAAAATCACGTC-------AGTTTTCTGATTTTGTCCGACTGAAAGTTGAGGATACAACTGGAAACATTAAAAATCCAATTGAACA---TCTGACT--TGAA---------------ATCAAAAAAAAATGTTCAAGG----AGTG---TGTACTT----TAGTTTGGTCTTTTTGAAAGAACAAGTATACAT
s caeRem4.Crem_Contig15   116382 206 -  1794024 ----------------AAAAGTC------TCGAGTgggttttgaagaaaagtatGAAA-----TTTCGAATCACGTCAAATAATAGTTTC----TGTTG-------------------TATCATAGGACATTTTGAGTCTTCCATCCAGACTActctaatttttgaagaaaaagaggacaGAACCAGATAAAAGTG--CAAGGTAGTGATGACATATATTTGTTCCGGATCCAATTTgttaaaagttcaaattgaaat
i caeRem4.Crem_Contig15 C 0 I 98
s caeSp111.Scaffold582    141445 121 +   484378 AATAAGGGGCAGGAGGTGGAGCT------TCGCGTGGTC--------AAAACCCAGAT-----TTTAAAATCACGTC-------AGTTTC----TCTT----------------------------GAGATTTTG-------------------TCTGGTTTGTGAA----------------------------------------ACTGACATG---------AGGATT--ATTGTTTGAAAGGACA---------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=-935.000000
s ce10.chrX              2542171 105 + 17718866 GGAAAAGTTCTTCAACGTAAAAATGTTTAAAATTATTATGAGGCAAAAACAAAACAAAGTGGTCATAGAATTTTTGGAAAAAAACTATGTT---TTTAATATGATATT
s caeSp111.Scaffold582    141566  58 +   484378 ------------TAACA-GAGCATGTTAAAAGT---------GCGAG----------------------------TGACAATAATCGTGTTATATTCAATATGATAaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeRem4.Crem_Contig15   116588  98 -  1794024 I

a score=-19335.000000
s ce10.chrX              2542276 515 + 17718866  
s caeRem4.Crem_Contig15   116686 356 -  1794024  
i caeRem4.Crem_Contig15 I 98 C 0
s caeSp111.Scaffold582    141624 359 +   484378  
i caeSp111.Scaffold582  C 0 I 79
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=611.000000
s ce10.chrX              2542791 12 + 17718866 -GGTATCTATCTT
s caeRem4.Crem_Contig15   117042 13 -  1794024 AGATATTTATGTT
i caeRem4.Crem_Contig15 C 0 I 58
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    141983 79 +   484378 I

a score=0.000000
s ce10.chrX              2542803 89 + 17718866 ATTGAAAACGTATGTCATTTAAAATTTTATTACTAAACTATTGTTCACCCGAAACTACCTAAAATATTGCATCCACATTTGAATCACGC
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    141983 79 +   484378 I
e caeRem4.Crem_Contig15   117055 58 -  1794024 I

a score=-48.000000
s ce10.chrX              2542892 8 + 17718866 AGACATAA
s caeRem4.Crem_Contig15   117113 8 -  1794024 aagaatcg
i caeRem4.Crem_Contig15 I 58 C 0
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    141983 79 +   484378 I

a score=1751.000000
s ce10.chrX              2542900 225 + 17718866 AACAAAGGCATTGGAGAATACGTATGTCTAGCCAAAGAAAAGCCTGATTCGAAGTTACCTTGAACAGAAGAACAGAATGAAACAGAAGAAAACAGTTTCGTGTTTCCTAGTGGGCAGATTTAAAGT--GTACAATTTGAGTAG--AAACAATGA-AAAATGCTGCCGACGGAACTGCAA--ATTTCATTTTCTCTTTTTTCATGCCAGCTGATGCGCTATGCTCTCTGTGAG
s caeRem4.Crem_Contig15   117121 173 -  1794024 agaaaaactatcagagaac---------------aaagaaaatg--------------------------aacaaaatgaatTGCGAGAACTAATTCTTTTGT------GTGGGTGGACTTGGTTTAAAAAGGAATTAAACAGGAAAACGGTCAGGGAAAGCT---AGTAGAACTGCGATTCTCTTcccattttctgttttttgccAGCT-----GCTTCTCTAACGG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    142062 176 +   484378 AACAGAGCTCTCGAGGAAT---------------GAGAAGAGTACGA--------------------AACAATAAAGTGTTGAGTAAGTGACACCTTCGTTAT------GTGGGTGGATTTGAATCTCGGTGAAATTGAGTCAAAAAACAGTCa-aaaaaaCT---GGTGGGACTGCaa--cttctccttttttctatatctTGTCAGCT-----GCTATGcttgttc----
i caeSp111.Scaffold582  I 79 C 0
e caePb3.Scfld02_0       3261007 1908 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=43143.000000
s ce10.chrX              2543125 205 + 17718866 AAAATTAATTAGTTTGATCTGTT-AACCTTTTTT-GA---TTTTCTATTTTATTCTT------------------GTAAAAGCTAG--------------------CTTTTTGTGAAATGAAATTGAA----GAACAAGGTCAAAGAGTACA-------------------------TCATTGTTATCTTGCTGAATAAATTAGGAGAACAAGGGCAA--AGGAGCACAAAGAGAAAA-----TACAC---GGAAAGTTTGT----------GGAATGAGCTGGTTCCACCCGTGTC
s caeRem4.Crem_Contig15   117294 270 -  1794024 AGAACTAATTAGCTTGATATATCAAACCTTTTCTAGG---TTTCCCTTTTCTTGTATATTGAGACTCATAC----GTGAATCTTCATAGCTTCTCAAAAG------CTTTTTGTGAGATGAAATAAAGAA--GAACAAGGTCAAAGAATATGAGCAACATCATCGGATGTCCTGGTTTCATTGTTATCTT--TGCATAAattaaaagaaagaagaaatatggaaactgaaaaaggagcACATATACACGCGGAGAAAGATGA----------GGAATGATCCTTTTCCACCCGTGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    142238 281 +   484378 agaattaattaACTCGATATGTC-AGCCCTTTCTTGA---TCtccttattcttttttagcATGGATTCTACTCCGCTAAAGCCTGA-AGTTTCTACAAGA------CTTTTTATAggatgaaagagaaaaaagaacaaggtCAAAGAATACGGACCACATCATCGTATGTCCGGGTTTCATTGTTATCTGGATGAataaattaga--gaaaaaggcat--gaaaactgaaagttGAGAGCAC-TACacgcaaaaaaagaagatgaagaagacggaATGAGCATTTTCCACCCGTGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3262915 267 -  4147112 AGAATTAATTAACTTCATACACG-AACCTcatctagatttttttcttattcagttTTA----------TAC----ATAAGCCCTGA-AGCATCATCGACATTCTAGCtttttatgaaatgaaaaaagaaagcaaataAGGTCAAAGAATATGAACTACATCATCGTATGTCCGAGTTTCATTGTTAtctgaatgaataaattaga--GAAGAAGgcata-aaaaactgaaagttgaGAGCAC-TACACatggaaaaaggaga----------ggaatgAGCGTTTTCCACCCgtgtt
i caePb3.Scfld02_0      I 1908 I 23
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=115.000000
s ce10.chrX              2543330 5 + 17718866 --CTAGG
s caeRem4.Crem_Contig15   117564 7 -  1794024 TTTTAGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    142519 7 +   484378 TTTCTGC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3263182 23 -  4147112 I
e caeJap4.Scaffold18213   265749 918 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=-6665.000000
s ce10.chrX              2543335 45 + 17718866 GAAAAATAA-GGAAAGTGAAAAAAAAAAACGAGAGAA------ATGAGAAAT
s caeRem4.Crem_Contig15   117571 16 -  1794024 Ctaaa---------cacgaaaaaaa---------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    142526 23 +   484378 TTAAAAC----GGGCATGAAGAGGAAT-------------------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   266667 51 +   720316 -GAAAACAACGGCAAGTGAACAATAAGAAAAGAAGAACCTTCCACCCGCACT
i caeJap4.Scaffold18213 I 918 C 0
e caePb3.Scfld02_0       3263182 23 -  4147112 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=85058.000000
s ce10.chrX              2543380 321 + 17718866 GAGAAACGGAAACAA-ATCAAATATGATGTGCTCTGTAGTTCC-TAGGCAAGTGTGTCCCGTTGCGTGCGG---TGCGCCTCCAGTTCCGGGTCGCG---------TTTCGAGGACGAGTAGGTAAGAAGTGGCGAGACTAATTCATGCGACACAGGCAAATGATTGGCCGTCAATGAGCAGAGTTCTG-AAAAAAAGAGCATT--CCAAGTCAAGG-CTTA-----GGGTTTCAATGTGCT-CCGACTCCGCCTATGA-GGAGCACCTAT--GGGGTGGGTGTGGAG---GCTGTTTACGCACA---TTTGAACGAGTTAGAATCGTATGGACAGGTGGAAACGTATATGTTC
s caeRem4.Crem_Contig15   117587 327 -  1794024 ---aaacggaaacaa-aTCAAATATGATGTGCT-------TCAGCAAGGGAGAGTCTCCTGTTGCGTGCAGTTATGCTGCTCCGGTTCCGGGTCATGATGAGTGGTATGAGGAGCAGAAGAGGCAAGCAGGGGTGACACCAATTCAAGGCAAATTTCAGAGTGATTTCTTATCGGTGAGCACACATCTG-AAATAAAGAACGCA--TCAAATCATGA-TTTCTAA--CGGGTTTGTTTTGTT-CCGACTCCGCCTACAATGGAGCACCTAGAAAGGGTGGG-GCAA-----GCTGTTTTCGCATA---AATGAACGGATTCTGGTCATACAGACAGCTGAAAACTTGTATGTTC
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    142549 316 +   484378 ------CGGAAACAA-ATCAAATATGATGTGCT-GGTAGTTC--TAGAGGAGAGCGTCCTGTTGCGTGCAG---TGCGTCTTCAGTTCCGGGTCGTG---------TTTGGAAGAAGAGTAGGTGAGAAGTGGGGAGATTAATTCGAGTGAAACTCTCGAATGATTGCTTGCCAACGAGCAGCATTCTG-AAATGAGAGACA----TTAAGTCATGAGTCTACTATCTGGGTTTGTCTTgtt--tggctccgcccac---ggGGCACCTAG--AGGGTGTG-GCGACACTCGatgtttttgcttt---ttcaaaaagaagcaaatcagaaaataaggCGGAATCAATTGTGTTT
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3263205 327 -  4147112 AAGAAACGGAAACAA-ATCAAATATGATGTGCTCTGTAGTTC--TAAGGCAGAGTGTCCTGTTGCGTGCTG---TGCATCTTGAGTTCCGGGTCGTT---------TTGAGAGGAGGAGTAGGTGAGAAGTGGAGAGACTAGTTCAAGTGAAACTCTCGACTGATTGCTTGTCAATGAGcagagttctgaaaatgaaaagaacattttgagtCAAGA-TTTCCAGAGCGGGTTTGTCTCGTT-CCGACTCCGCCCAC---GGAGCACCCAG--AGGGTGGG-GCGATGCG-GCTGTTTATGCATA---TTTGAACGGATTCTGATAACATTGACAGGTGAATGCGCGTATGTTC
i caePb3.Scfld02_0      I 23 I 226
s caeJap4.Scaffold18213   266718 307 +   720316 -GGAAACGGGATCAAGATCAAATAAAATGCGATAAGCCGTT---CAGAGCATTGCCTCCTGTTGCGTGCGGGCGGCAGCCTTTAATTCCTGACTGGT---------CGTCAAAGAAGAGTAGGAGAGCAATGGAGAGACTAGCTCGAGCGAGACTTGCGTGTGATTGCTTGTCAACGAGCACATTTCTG-GAA--AAGAACATA--TCAAGTCACGG-ATGG-----GGGACGAGTCTGGCGCCCCGCCCCGCCTCC-----ATCCTCTTT--------TG----------GCTGTTTACGCAATTGCTGTGAACGGGTTCTGATCTTTCAGACAGGTGCAAACTGTTCTGTTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17290548 2942 - 21540570 I

a score=841.000000
s ce10.chrX              2543701 13 + 17718866 CTGAGCGATCTGG
s caeRem4.Crem_Contig15   117919 13 -  1794024 GCGTATGATCTAG
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    142869 13 +   484378 TTAAATGATCTAG
i caeSp111.Scaffold582  I 4 I 200
s caeJap4.Scaffold18213   267025 11 +   720316 --TCGCATTCGGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3263532 226 -  4147112 I
e cb4.chrX              17290548 2942 - 21540570 I

a score=-520.000000
s ce10.chrX              2543714 15 + 17718866 TTTATTGTTAGTGT--G
s caeRem4.Crem_Contig15   117932 17 -  1794024 CTGGCGAATAGTGTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   267036 14 +   720316 -TGGATTTTTGTGT--G
i caeJap4.Scaffold18213 C 0 I 261
e caePb3.Scfld02_0       3263532 226 -  4147112 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    142882 200 +   484378 I

a score=868.000000
s ce10.chrX              2543729 136 + 17718866 ATTTTTTAGTAAACAGATTTGGAAATAAGGAAAAAGGGCACCGGATTGG-----AATTAGCATTTGCACGAAAATAAT----GATTATATTTTTAATCTCATAAATGAATTCCTACATATATAATCCATTATAAA--------ACCTTTTACT
s caeRem4.Crem_Contig15   117949 142 -  1794024 ACTTCCTTGTGGGGAGAATGG-----------AAAGGGCGTCATAATGAATATCAAGAAGGATTTGTTCCAAAATGAGGATAGATTATTTTTCTATCAGATCGAATGACCTCTAATCTTGAGAAAATCTTATGAACACTTGAGACCTTTTACT
i caeRem4.Crem_Contig15 C 0 I 36
e caePb3.Scfld02_0       3263532 226 -  4147112 I
e caeJap4.Scaffold18213   267050 261 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    142882 200 +   484378 I

a score=0.000000
s ce10.chrX              2543865 875 + 17718866  
e caePb3.Scfld02_0       3263532 226 -  4147112 I
e caeJap4.Scaffold18213   267050 261 +   720316 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    142882 200 +   484378 I
e caeRem4.Crem_Contig15   118091  36 -  1794024 I

a score=334.000000
s ce10.chrX              2544740 16 + 17718866 AATTTCCAAA----------ATGTCA
s caeJap4.Scaffold18213   267311 26 +   720316 aatttccaaatctTTATGAGAGATCG
i caeJap4.Scaffold18213 I 261 C 0
e caePb3.Scfld02_0       3263532 226 -  4147112 I
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    142882 200 +   484378 I
e caeRem4.Crem_Contig15   118091 36 -  1794024 I

a score=418.000000
s ce10.chrX              2544756 3 + 17718866 TCA
s caePb3.Scfld02_0       3263758 3 -  4147112 tca
i caePb3.Scfld02_0      I 226 C 0
s caeJap4.Scaffold18213   267337 3 +   720316 ACA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17290548 2942 - 21540570 I
e caeSp111.Scaffold582    142882 200 +   484378 I
e caeRem4.Crem_Contig15   118091 36 -  1794024 I

a score=977.000000
s ce10.chrX              2544759 9 + 17718866 TTACAACGA
s cb4.chrX              17293490 9 - 21540570 TTTCAACTC
i cb4.chrX              I 2942 C 0
s caeRem4.Crem_Contig15   118127 9 -  1794024 TCATAACTC
i caeRem4.Crem_Contig15 I 36 C 0
s caePb3.Scfld02_0       3263761 9 -  4147112 taacaataa
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   267340 9 +   720316 ACAAAACTC
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    142882 200 +   484378 I

a score=230835.000000
s ce10.chrX              2544768 453 + 17718866 ACCGAACAATTTCTGCATGACGATTGAAAGCGCCACGTTTGTAACAACCGCTATGATGCTGTAATACTGATAAGAAATGGCAAAAATGCGCTCCAACCCGAAAACCCTGG-AAACA--------ATCAATTTGTCATAA-TCAAATTTACAATGAATTACAATGGGGTCGACGTGACTGCTCCAATAAACGATTCATCAAAATACGTCAGAGTTT----GATTTGAGCACTGACCAAGCTCCAATGCAACAGGTTTGACCTG--------AAAAATGTAATTCTC-AAAATTTCTTTGAAAC--GAGTGTTC-CATACCTTCACTAGCACGCTTCCAATTGAAATGGAAAAACAAACAATGATTGACCCAATTAATCCAACCAGTGCAGCTTTTTCTTTCACGCGAGGAACAAATAATCCAACCACAAATGATCCGAGAACCGGTCCACCACCGGCGCCAAAAACTATGAACGAAACCT
s cb4.chrX              17293499 408 - 21540570 ACCCAAAATGATCTGCACAATGAAGGACACAACCACATTAGTGATTACTGCGATTACACTGTAGTATTGATAGGATACGGCAAAAATTCGATCGATACCATATAGTCTGG-AAAACA----AGTATTaggtattttcaattttgatgtaGCAT---TTACAATGGTGTCGAAGTAACGGTTCCAAT---TAGACCCTCATTGAA-AACCGTGTTGGTCTGGTTAGAGCATTGACCAAGTTCTAGTGAAACTGGTCT-----------------------------------------------------------AACTTTTAGAATCGTGGCTCCAACAGAGACTCCAAAGCTTATCATCACCGACGATAATAGTCCAACTACTGCTGCCGCTCCTTTTACTCGTGGAATGAACATTCCAACAACAAAAGAACCGAGGACTGGGCCGCCAATGGCTCCAAACACTATAAAGCTAGCCT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15   118136 458 -  1794024 ACCAATAAACAATTGCATGATGTATGcaacaaaaacatttgttaTTATACCGATAACGCTGTAGTACTGATAGGAGACGGCAAAAATGCGGTCAAACCCATAAGCTCTGG-AAAAAT----ATCATTAATTTCTCATAA-TCAGATTAAAAATGTATTACAACGGGGTTGAAGTAACTTCTCCAATGTGTGAGTCGTCATAGAATGACATCGTTG----AGTTTCCACACTGACCGAGTTCTAGTTGCACTGGTTTTACCTG--------CAATGATCACtcatt-ttgatttgattttatA--TTAAGTTTGCATACCTTTACTAGTACACTTCcaattgaaatagaaaaacaagcAACTATTGAAGCAAGAAGACCGATAAAAGCAGCTAAACCTTTGACTCGAGGTAAGAATAAGCCAATCACAAAAGAACCAAGAACTGGTCCACCACCCGCACCAAAGACTATGAAAGACACCT
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    143082 457 +   484378 ACCAAGCAATCTTTGCATAACCACTGAGACCGCCACGTTAGTGATAACGGCAATGATGCAGTAATACTGATAAGAAACGGCAAGAATTCGATCGAACCCATAAGCTCTGG-AAACAA----ATGAGTTATTTATTGTAA-TCAGATTTTTGGTGTATTACAGTGGGACCGATGTGACTTGTCCGATAAGCGATTCATCATAAAACGTCACAGTTT----GATTCAAACACTGTCCCAACTCGAGTGGAACTGGTTTCACCTG--------CAACTCATGCTTATC-ATGATTTCATATTAAA--CCCCACTT-CACACCTTCACCAGTACGCTTCCGATCGAGATTGCAAAACAAGCGATTATCGAAGCAAGTAATCCTACAAAAGCTGCTTTTTCCTTCACGCGGGGAATGAATAAGCCAACAACGAATGATCCAAGAACCGGCCCACCGCCAGCGCCAAATACTATGAACGAGACCT
i caeSp111.Scaffold582  I 200 I 47
s caePb3.Scfld02_0       3263776 459 -  4147112 aCCGAACAACTTCTGCATGACCACTGAGACCGCCACGTTTGTGATAACCGCAATGATGCTGTAATACTGATAAGAGACTGCAAAAATGCGGTCCAACCCGTAAGCCCTGGAAAATAA----ATGATCAATTTGTCACAA-TCATATTTACAATGTATTACAATGGAGTTGATGTGACCTGCCCAATAACCGATTCATCAAAATACGTCACTGTTT----CATTCGAACATTGCCCGAGATCTAGAGGAATTGGCTTTACCTG--------CAACAGATTTTCAACGATGATTTCATTCTGTA--AAACATTA-CACACCTTCACTATAACACTGCCGATTGATATTGCAAAACAAGCGATTATTGAACCAATTAATCCTACAAAAGCGGCTTTCCCTTTCACGCGGGGTATGAATAATCCGACAATAAATGATCCAAGAACCGGGCCTCCACCGGCGCCGAAAACTATAAACGAGACCT
i caePb3.Scfld02_0      I 6 I 2
s caeJap4.Scaffold18213   267349 463 +   720316 ACCGAGCATTCTTTGTGTGATTACTGAAACTACGACGTTTGTGATAACAGCTATAATGCTATAATACTGATAAGAAACGGCAAAAATGCGGTCAAACCCATAAACCCTGG-AAACAGTTTCATGATTTGATTTTTATAA--CAGTTCAA-------TTACAATGGAGTCGATGTCACTTGCCCAATCAGCGATTCATCATATTGTGTCACCGTCA----CATTCGAGCACTGACCCAGTTCAAGAATGATGGGTTTAGCCTGTCAATTTTCAAAGTGATATCAGA-CTGATGTCATATAAAGTCAAAAGCTG-CACACCTTCACGAAAACGCTTCCAATTGAAATGACAAAACAAACGACTATGGAAGAAACTAATCCGACAAAAGCAGCCTTTCCCCTCACATGAGGAACGAATAATCCAACAACAAACGATCCGAGCACAGGACCTCCGCCTGCGCCGAACACAATGAATGACACCT
i caeJap4.Scaffold18213 C 0 C 0

a score=-16119.000000
s ce10.chrX              2545221 44 + 17718866 -ACATTTTTGGTGTATTAATCGTATTAATCGAAAAG-TGTTTCAG-----T
s cb4.chrX              17293911 31 - 21540570 -------------------tatcaatattttttgag-gaCACCAATTCCTA
i cb4.chrX              I 4 I 2
s caeRem4.Crem_Contig15   118600 36 -  1794024 -AGGAATTgg---------tatcaaaaataaataagaaacagaaa-----a
i caeRem4.Crem_Contig15 I 6 I 2
s caePb3.Scfld02_0       3264237 43 -  4147112 -AGATATCGGGGGTGGC-ATATCTTTTATTCAAAAG-GGTGTCAA-----A
i caePb3.Scfld02_0      I 2 I 1
s caeJap4.Scaffold18213   267812 33 +   720316 GAAACAACGGATTAGAT--CATTCTGAAAAAGAAA----------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    143539 47 +   484378 I

a score=44587.000000
s ce10.chrX              2545265 77 + 17718866 TTACCTGCAATATTATGCTCTGCAGCATGCTGCACAGAAACGCCACAAAT--ATTGAAATGAACGAAAGAACAATTGCT
s cb4.chrX              17293944 77 - 21540570 CTACCTGAAGAATAATTCCTTTGAAC-TGC-GCACATCCAAACGCCAAGCCaattgaaacaaaagaaagaaaaatagct
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   118638 77 -  1794024 ttACCTGCAAAATGATTCCTTGCAGCATACTACACAACATAGCTACAAAT--ATAGAAATGAAAGAGAGGAATATTGCT
i caeRem4.Crem_Contig15 I 2 I 41
s caeSp111.Scaffold582    143586 77 +   484378 tcacCTGCAAAATGATGCTCTGCAACATACTACACAGAAACGccacaaaa--atagaaacgaaTGATAGGGCAAGAGCT
i caeSp111.Scaffold582  I 47 C 0
s caePb3.Scfld02_0       3264281 77 -  4147112 ATACCTGCAAAATGAAGCTTTGCAGCATATTGCATAAAAGAGCCACGAAA--ATGGAGACGAAAGATAGAGCCAgagct
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   267845 77 +   720316 TCACCTGCAAAATAATGCTTTCAAGTTTGCTGCAAATAAAGGCCACAAAA--ATAGAGATGAATGAAAGAATTATGGCT
i caeJap4.Scaffold18213 C 0 C 0

a score=-5632.000000
s ce10.chrX              2545342 39 + 17718866 -GAAGT--TGTTGAATAAAGGTTAAAAATTTATGTATTTTCT
s cb4.chrX              17294021 29 - 21540570 -gcaattttaggaaaattaaatta---tttttt---------
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold582    143663 35 +   484378 -GAAAT------AATTATAGATTGAGATTATCCGCACTTGCT
i caeSp111.Scaffold582  C 0 I 30
s caePb3.Scfld02_0       3264358 30 -  4147112 -gaaat-----gaaaaataaatag------tttagagatgtt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   267922 37 +   720316 AAAAAT-----GGAGTTAAGATTAGTGGTTGATAAAATTGTT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   118715 41 -  1794024 I

a score=91.000000
s ce10.chrX              2545381 1 + 17718866 A
s caeJap4.Scaffold18213   267959 1 +   720316 A
i caeJap4.Scaffold18213 C 0 I 9
e caePb3.Scfld02_0       3264388 2 -  4147112 I
e cb4.chrX              17294050 9 - 21540570 I
e caeSp111.Scaffold582    143698 30 +   484378 I
e caeRem4.Crem_Contig15   118715 41 -  1794024 I

a score=613.000000
s ce10.chrX              2545382 12 + 17718866 TGTTCCTTAAGA
s caePb3.Scfld02_0       3264390 12 -  4147112 tgttttttgaaa
i caePb3.Scfld02_0      I 2 I 132
e caeJap4.Scaffold18213   267960  9 +   720316 I
e cb4.chrX              17294050  9 - 21540570 I
e caeSp111.Scaffold582    143698 30 +   484378 I
e caeRem4.Crem_Contig15   118715 41 -  1794024 I

a score=0.000000
s ce10.chrX              2545394 563 + 17718866  
e caePb3.Scfld02_0       3264402 132 -  4147112 I
e caeJap4.Scaffold18213   267960   9 +   720316 I
e cb4.chrX              17294050   9 - 21540570 I
e caeSp111.Scaffold582    143698  30 +   484378 I
e caeRem4.Crem_Contig15   118715  41 -  1794024 I

a score=840.000000
s ce10.chrX              2545957 19 + 17718866 ATATTCAAATTTTCCCACT
s caeSp111.Scaffold582    143728 19 +   484378 atttttagatttttcctCC
i caeSp111.Scaffold582  I 30 C 0
e caePb3.Scfld02_0       3264402 132 -  4147112 I
e caeJap4.Scaffold18213   267960  9 +   720316 I
e cb4.chrX              17294050  9 - 21540570 I
e caeRem4.Crem_Contig15   118715 41 -  1794024 I

a score=-423.000000
s ce10.chrX              2545976 2 + 17718866 TC
s caeSp111.Scaffold582    143747 2 +   484378 AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3264534 2 -  4147112 TT
i caePb3.Scfld02_0      I 132 C 0
e caeJap4.Scaffold18213   267960 9 +   720316 I
e cb4.chrX              17294050 9 - 21540570 I
e caeRem4.Crem_Contig15   118715 41 -  1794024 I

a score=290316.000000
s ce10.chrX              2545978 627 + 17718866  
s cb4.chrX              17294059 610 - 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig15   118756 626 -  1794024  
i caeRem4.Crem_Contig15 I 41 C 0
s caeSp111.Scaffold582    143749 631 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3264536 634 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   267969 621 +   720316  
i caeJap4.Scaffold18213 I 9 I 109

a score=-5978.000000
s ce10.chrX              2546605 120 + 17718866 G--AGCTTTATGATGTG---------TATTGAGGATTTTGCAGAGTTATTTTA------AATATCAGATCAACAGAAGAATATTCTAA----TAAACTACTAGAAGCTGGAAATTCTGT-----------GTGTGCGTCAATAGGTCGC-TGC
s cb4.chrX              17294669  55 - 21540570 ---------ATGATG----------------AGC--------------------------------------TACACAGAGGCTAGAA----AA----------GAAGGGAG---------------AGGGTTTGCGTCAATTG------CAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   119382 123 -  1794024 C--ATAAAAGTGATGT----------AAGTCAGctt---gcagtttttttcta--tcttcacATTGGATCATTgcataaaaatcagaa----aaa---aaaactaaaggGAG------TGTGCTAGACGAGTTTGCGTCAATAGGTCGCTCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    144380 141 +   484378 c--ACATTTATGATGT----------TTGTAAGCTTTCCCAGGTTTTCCAGCAAGTATTAATATCAGATCATGGCATTTAAGTTCCAAGCACAGATTAGGAAAGAACGAGAGAGTGTGTGTGCAAAGCGAGTTTGCGTCAACAGGTCGCTCAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3265170 142 -  4147112 cATATATTTATGATGTGAGTGGGAGCTCATGAGCTTTTTGCAGCTTTCTTACAAGTCTTAACATCAGATCATTGCATTAAATTCACGA----AGAGGCAGAAAAAGCGAGAGATGTCGTCT-------AAGTTTGCGTCAATAGGTCGCTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   268590 109 +   720316 I

a score=82547.000000
s ce10.chrX              2546725 300 + 17718866 TCTATCCGATTAGTTT---CTAATC--TGGTCAGAATTTGCATTTGTGGGGAATAAAATAGAGATATTTTGGAATCTATTTCAT---TTCTCAATGGTTGTGCTCATTTACACATC------CCCCA-------------CACATTA------------TAGGGACTTACTCATTGAGAATGAACCGCTTTCCATGCACAACACTTGTGTACACATCATGGAT-----GCTCATCTCTCG----TAATGAAATTGAAATTATGAAGGTCATTGTGAGAAATATTAATAACATTTGAATTGCGGAAGTGTGAATTCCGGCTTTTACTCCTCCCT-------GGAAAAAAA----------------------TTGTAT------
s cb4.chrX              17294724 263 - 21540570 ---ATCTGATCAAATT---CTTAAC--AGCTC-AGATTTATAtccgagagaa-------aaaaatg---------------------ttatttttatttttgaacattt---tatc---------------------------attt------------cagGGACTTACTCGTTGAGGATGAGCCTCTTTCCACTGATCACATTACTGTACGCTTTGGAAAT-----TCCAATCTGTTT----AAGAGAGATCACAATGATAGCTGACATGGCAACGAAAATGACCAGCATTTGAACAGCAGAGGTGTGGATTCCGGCTTTGGCACCACCCTAGAATAGGCAAA--------------------------TTGTAT------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   119505 291 -  1794024 TTTATCCGATTAGTTT---CTTAGC--TTGTCGGGATTTGCATCCGGGagga-------aaagatttga----aaacacATCTCATCTTATTTTTTATCTAGACATTTT---TATCTATCTCCCACT-------------CAGATAT------------AAGGGACATACTCATTTAGAATCAATCTTTTGCCAGTTGTGATACTA---------TCGAGAATGTCTCTCCAACCCATTTGGTGAATAGAAATGGAAACGATAAACGCCATTGTGAAGATTATAAGTGCCATTTGGATAGCGGACGTATGGATTCCCGCTTTTGCACCTCcct-------gaaaa--------------------------ttgtga------
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    144521 275 +   484378 ATCATCCGATTAGATT---CTTA--------CTAGATTC---TTAACAAGAATTTTCTGAGAGATTTAC----AACCAC--------TTTCAATCTGTCT--GTCAATC---TGCC------CCACT-------------CATATTT-------------AGGGACCCACTCATTCAAAATAAGCCGCTTTCCTCGCACAACACTTGTGTACACATCATCAAT-----GCTCATCTCTCg----caaagaaattgaaattataaagGCCATCGTGAGGAAGATTAGTGCCATTTGAACAGCAGAAGTATGGATTCCAGCCTTTGCACCACCCT-------GTAAAAGT-----------------------TTATTc------
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3265312 290 -  4147112 TATATCCGATTAGTTG---CTTAAC--ATGCCGAGATTTgcattgagagaaa-------aaagattttc---aaactaCT-------TTTCTATCTGTCTTGTTCATTC---CCTC------CCCCTC----------CACATATTT-------------AGGGACCCACTCATTCAGTATAAGCCGTCGGCCATTCACAATGCTTGTGTACACTTTTCCAAT-----GCTCATCTCTCg----gagagaaattgaaattatgaaGGCCATCGTGAGAAATATTAATGCCATTTGAACAGCGGAAGTATGGATTCCGGCTTTTGCTCCGCCCT-------GTAAAAGTGCAAAA-----------------TCGTCT------
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18213   268699 337 +   720316 TTTATCAGATTAGTTTGTGCTCAGCTTTTGCCAGGATTtgtattgagaaaaa-------aagacaacga----AAGC----------CTACAGGAAATTCAGAACGAAT---CCCC------CCACGCACAAGCTCATCCGACATTATGATGAGCGAGACAAGAACCTACTCATCCAAAATAAGCCGCCTGCCGCGCACAACATTTGTGTATACATCATTGAT-----GCTCATCTCTCG----CAACGAAATTGTGATTATAAAGGCCATCGTGAGAAATATAAGAGCCATTTGAACTGCAGAAGTATGAATTCCAGCTTTTGCTCCACCCT-------GCAAAAATACCTTGCACCCTCtccatttttcttgttttcctcT
i caeJap4.Scaffold18213 I 109 C 0

a score=-4953.000000
s ce10.chrX              2547025 22 + 17718866 GATGAAAAATATTGAACACCAC--
s cb4.chrX              17294988 15 - 21540570 -------tgttttgaatagttt--
i cb4.chrX              I 1 I 8
s caeRem4.Crem_Contig15   119797 15 -  1794024 -------gaatATTATTATCTT--
i caeRem4.Crem_Contig15 I 1 I 22
s caeSp111.Scaffold582    144797 14 +   484378 --------aattctgatttttt--
i caeSp111.Scaffold582  I 1 I 16
s caeJap4.Scaffold18213   269036 14 +   720316 ----------TTTGGATAATCTTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3265602 39 -  4147112 I

a score=99026.000000
s ce10.chrX              2547047 133 + 17718866 TACTCACCACACTTATATAGAAAGCAGAGAGTACAGCGGTGATGAGGATTGATACGGTGATCGGGATGTTGGTAATTGAGGCGATGGCCAGCGACGGAGCATACAGTGCAACTGAGTTGTAGAGAATCATCTG
s cb4.chrX              17295011 132 - 21540570 -ACGCACCAAGCTGATATACACGGCTGACAGCAAAGAAGTAATACATATTGAGACCCCAATTGGAATGTCGGTGAGGGAAGCGATGGCAAGAGATGGTGCATAGAGAGCGACGGCGTTGTACAGAAGCATCTG
i cb4.chrX              I 8 I 444
s caeRem4.Crem_Contig15   119834 133 -  1794024 GACTTACAACACTTATGTAAACTGCTGACAGAATTGCAGTAATAAGAATTGAAATGGTGATGGGAATTTTGGTGATTGTAGCAATAGCAAGAGACGGAGCATATAATGCAACAGAGTTGTATAACAtcatcta
i caeRem4.Crem_Contig15 I 22 C 0
s caeSp111.Scaffold582    144827 133 +   484378 TTCTCACCACACTGATATAAAGGGCGGAGAGAGTTGCTGTGATGAGGATAGATATTGTGATAGGGATCTTAGTCAGAGAAGCGATGGCAAGAGATGGAGCATACAAAGCAACGGAATTGTAGAGAAGCATCTG
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3265641 133 -  4147112 TACTCACCACACTAATGTACACGGCGGAAAGGGTTGCTGTGATGAGGATAGATATAGTGATGGGAATTTTAGTGATAGAAGCAATGGCAAGGGATGGAGCATATAAGGCAACAGAGTTGTAGAGCAGCATCTG
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18213   269050 133 +   720316 TACTCACAATACTAATATAGACCGCTGATATGAAAGCCGTGATAAATATGGATATTGTGATTGGAATTTTGGTAATGGAGGCAATGGCAAGAGATGGGGCATACAATGCTACCGAATTGTAAAGAATCATCTG
i caeJap4.Scaffold18213 C 0 I 44

a score=-44492.000000
s ce10.chrX              2547180 382 + 17718866 -AGTTTAAGAAAAATTACGTTGATGTAAAACATTGAATAGAGTAGGTTCCAAAATGACCCA-ACACCATAG--------TAAAATGCTTGTTTCGAAAAGTGGAAATTATTGAGTTTTTTGCCATTTTTGAGAA---TT---------------CCTTAGCAGTGACAAAAACTGAAAAATC-----------GTCTCTTTTTGACAAAA-TTGTTTTTTAACTCAATAAAAAAATTGTTAAGTTTTACTAAAATTTTTTGTAATTTTGGCGCATTTGGGGCTACTCTTCCAATAAGATTTGAAACAAATTAGTTATAAATGTGGAATCAATAATACTGTTTAGGCTTGTTAAATAAGTACCATTAAGACGAACCTAATCGAATTACTATACAAAAGTTTCTGGAAAACCCTTTTTTGGATA
s caeRem4.Crem_Contig15   119967 217 -  1794024 aaa---atgaaaatg----------taacAAGTCGAACA--------TACAGAATAGACTATACATCTTTTAGTTTGTGTAAAAtgcct-------------------------tcttttct---------------tt---------------cat-----ctCTTATTCAACA-CAAATT-----------ATCTGAGTATGCGAAGT-TTGTGTTTTCAAACAT---------------------CGAACATCGGAtagaattgtttga-------------------------------aataaaat-----------------------tcatgTCAGAGG-----------GCAATTGTAAG-CGATCTCCCAAAAATGA-Ta----------atcca-------tattt------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    144960 208 +   484378 AAA---GTGA---------------TATCATTTGAGGAA--------GTCAGAA--------ATGTCATGA------TGTTAAACAATT-------------------------TTGTGTGT---------------TT---------------CTC-----GTGttaagaaaaatcaaattcca--------ATC----CATTCAAAGA---ACGTCAgggagcaaaaaa-----------------agaacatttttcgtatatattgaaaatatatg-----------------------aaCAAA-------------------------GGATGTTGAAGATT--------TGCAATATCA----tgacatgaaaaaaa---------------ttcaa-------ttttttgaaca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3265774 290 -  4147112 CAATTTGTGAAAGGTAAAAGAGAATTATAAATTggtact--------tttgaaa--------acatgctga----------aaatattt-------------------------ttttttgcaaacctTAGATACCATTGAGAGCAAAACACAACAT-----GTAGCAAAGAACGataaaaaccatgagatatatc--ggtattcgaaaatatatattaaaaaaccagaaatatat------------taaaaattGATCTTAGATGtgtgatatttgaa-----------------------aataaact----------------------gtgatcctgaaattt--------cgaatttcca----gaaCTCAGAAAAACAG-TATATAAGAATTTTCGAAGG----TTTCTCAAATA
i caePb3.Scfld02_0      C 0 I 111
e caeJap4.Scaffold18213   269183  44 +   720316 I
e cb4.chrX              17295143 444 - 21540570 I

a score=-7227.000000
s ce10.chrX              2547562 146 + 17718866 CTATGTTCCCGACCCGGCTCACCCATAATAAATAGGCATAGGAAAAAAAGCATTGGTGCAGCCGGCGACTAACGGGCGACAGTGGGCAAGTAGCGGGCAAAATCAAACGTAAAATCGATAATTTAAATTAATTGGAACTATATATA
s caeRem4.Crem_Contig15   120184  64 -  1794024 ----------------------tcaaaagCAAGATTTGTTCGGGAACGATCAATGCca----------------------------------------ataatcgaa---aaaatt------tgaactttcaagA-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145168  63 +   484378 ---------------------gttgAAGCTCAtatatctaaaaaaataatagatg-------------------------------------------aaaatcaag---aaaaataatagatgaaaatT----------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3266064 111 -  4147112 I
e caeJap4.Scaffold18213   269183  44 +   720316 I
e cb4.chrX              17295143 444 - 21540570 I

a score=-11693.000000
s ce10.chrX              2547708 71 + 17718866 CATCAACCCTTGCCAAAATCATTACAAGTACTTTACAATTTAACAGAACAGATTGTCAATAGTTTCTATTA
s caeRem4.Crem_Contig15   120248 18 -  1794024 ------------------------------------CACTTaaaaaaaCGTATT-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145231 28 +   484378 -----------------ACCAC-----------TATCAgtttattaaa---atttt---------ctg---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266175 52 -  4147112 CATGAA-ATTGGGTAAAATCACATCGAA-----TGTCTCACAACTATA---ATTTTC-------CCCG---
i caePb3.Scfld02_0      I 111 C 0
e caeJap4.Scaffold18213   269183 44 +   720316 I
e cb4.chrX              17295143 444 - 21540570 I

a score=-5711.000000
s ce10.chrX              2547779 22 + 17718866 TACATCTGTAGTAATACTACA--C
s cb4.chrX              17295587 18 - 21540570 TACATTTAT------ATAAATTGC
i cb4.chrX              I 444 C 0
s caeRem4.Crem_Contig15   120266  1 -  1794024 -----------------------C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145259 22 +   484378 aacagTTACTGGTGAATGAAA--C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266227 16 -  4147112 GATCGCTTC------AAAACA--C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   269183 44 +   720316 I

a score=45568.000000
s ce10.chrX              2547801 78 + 17718866 TAACCTGAACACAAAACAACGATGTCGTCACAAATCTGCATTTGTAGTCAAATCGTCTTTCAAAGTACTGAAATTTTC--------
s cb4.chrX              17295605 78 - 21540570 TCACCTGTAGGACGAAAAGAAGTGTTGTGATCATCCTGCATGAAAAGTTGAAACGATTCTCAAAgtactgaaagaaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   120267 78 -  1794024 TCACCTGCACACAAAAGAGAAGAGTTGTGACAAACCGGCAGTTGTAATTGAATCTTCTTTCGAAATACTAAAACATTC--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145281 78 +   484378 TCACTTGTAGACAAAACAATGATGTAGTCACAAATCTGCATTTGTAATCAAATCTCCTTTCGAAAtactgaaactttt--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266243 78 -  4147112 TCACTTGTAAGCAAAATAATGACGTTGTCACAAATCTGCATTTGTAGTTGAACCGACgttcaaaatactgaaaatcac--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   269227 86 +   720316 TAACCTGGACGCAAAATAAGGATGTTGTTACAAATCTACAATTGTAGTCAAATCGTCGCTCGAAGTACTgcaaacaatattttttc
i caeJap4.Scaffold18213 I 44 I 1291

a score=83640.000000
s ce10.chrX              2547879 166 + 17718866 AAA----AGAAATATTATTCATCATGGAATCCATCAATTT----ATACCTCGTATATTGTTGTGAGCTTGAGGCGATAGAGGACCGGCAAAAAAACGAATGCAACAATTGGAAACGAGATAACGTACATTGGTGCGAACCAGAGCATCATACCTCCTTGGTAATAAATCTGGAA
s cb4.chrX              17295683 162 - 21540570 aat----aactacATTT----TCAAGAACCTTACTGCAAC----ATACCTGATACGCCGTGATAAGTTTAGCATTGTAAAACACAGGAATGAATACATACGCAAcaataggaaacgagatacaGTACATTGGGATATACCATAACATCATGCTTCCTTGAtagtaaatctgaaa
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig15   120345 163 -  1794024 AGTCTTGaacactattt----tca--gacaaggaTACAA-----ATACCTCATAGATAGTTGTAAGTTTCAACTTGTACAAAACAGGAAGGAACACGTAAGCCACGAGTGGAAACGATATGAAGTACATCGGAGCATACCATAGCATCATTCCTCCCTGATAGTAAACCTGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145359 163 +   484378 ttc----cgttaGTTTC-------AGAATCTCGTATCAATTTCAATACCTCATAGATAGTTGTCAGTTTTAAATTATACAAAACTGGCAAGAAAACATAGGCAACTATCGGAAACGAGATCACGTACATTGGCGCAAACCATAACATCATCCCTCCTTGGTaataaatctgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266321 165 -  4147112 GTT----AGTTGACTTT----CCGAGGATTTCTTCAGGCCCTC-GTACCTCATAAATAGTtgtcaatttcagattatACAGCACTGGCAGAAAAACATAGGCTACAATTGGAAAAGCGATTACATACATTGGTGCGAACCAAAGCATCATCCCTCCTTGGTAATAAATCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   270604 162 +   720316 -------AACacaaatt----ttataaatttttaaaccTCTCA-TTACCTCATAAATTGTTGTCAACTTCAAATTATACAAGactggaagaaaaacaaatgcgACGATTGGAAAAGCAATCGCGTACATCGGTACAAACCACAGCATCATTCCACCTTGATAATAAATCTGAAA
i caeJap4.Scaffold18213 I 1291 I 30

a score=-829.000000
s ce10.chrX              2548045 1 + 17718866 T-
s caeRem4.Crem_Contig15   120508 1 -  1794024 -A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    145522 1 +   484378 t-
i caeSp111.Scaffold582  C 0 I 11
e caePb3.Scfld02_0       3266486 0 -  4147112 C
e caeJap4.Scaffold18213   270766 30 +   720316 I
e cb4.chrX              17295845 44 - 21540570 I

a score=-1041.000000
s ce10.chrX              2548046 13 + 17718866 ATTTTACCATTTT----
s caeRem4.Crem_Contig15   120509 13 -  1794024 ----CTTCATCCATGTT
i caeRem4.Crem_Contig15 C 0 I 20
s caePb3.Scfld02_0       3266486 10 -  4147112 ---TCATCATTTG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   270766 30 +   720316 I
e cb4.chrX              17295845 44 - 21540570 I
e caeSp111.Scaffold582    145523 11 +   484378 I

a score=127.000000
s ce10.chrX              2548059 6 + 17718866 ACATTA
s caePb3.Scfld02_0       3266496 6 -  4147112 TCTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   270766 30 +   720316 I
e cb4.chrX              17295845 44 - 21540570 I
e caeSp111.Scaffold582    145523 11 +   484378 I
e caeRem4.Crem_Contig15   120522 20 -  1794024 I

a score=0.000000
s ce10.chrX              2548065 424 + 17718866 TTCTGTACATGTAATACTATTATTTTCAATCCGGAGTGTGTGGCAATTGCCAACAgacaattctataaaatgagcaattgcggcatttaactttattgataaaataatggcgaatatttgctttttctgaaaataccctttatttaaattgaaacagcttgaattgctcaaaaattgtccaaaagttgaaaattgccggaaaatatcggtcaaataatgggaagcaattttcggcattttttaactttcagacaattttttatcatttttcagttttaagttaaatttttaaaaaagtatttttagataaagcaaatatttcgctatattatattattaaattttaattaaataccttgagataatatagctcattttctagatctgccgGCCGGCAATTGGCCTACTTCTCTAAACCACCCCT
e caePb3.Scfld02_0       3266502   0 -  4147112 C
e caeJap4.Scaffold18213   270766  30 +   720316 I
e cb4.chrX              17295845  44 - 21540570 I
e caeSp111.Scaffold582    145523  11 +   484378 I
e caeRem4.Crem_Contig15   120522  20 -  1794024 I

a score=66.000000
s ce10.chrX              2548489 7 + 17718866 TTACTTT
s caePb3.Scfld02_0       3266502 7 -  4147112 TTaaccc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   270766 30 +   720316 I
e cb4.chrX              17295845 44 - 21540570 I
e caeSp111.Scaffold582    145523 11 +   484378 I
e caeRem4.Crem_Contig15   120522 20 -  1794024 I

a score=723.000000
s ce10.chrX              2548496 7 + 17718866 TCTTTGA
s caePb3.Scfld02_0       3266509 7 -  4147112 tctctct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   270796 7 +   720316 TCTTTAA
i caeJap4.Scaffold18213 I 30 C 0
e cb4.chrX              17295845 44 - 21540570 I
e caeSp111.Scaffold582    145523 11 +   484378 I
e caeRem4.Crem_Contig15   120522 20 -  1794024 I

a score=1709.000000
s ce10.chrX              2548503 8 + 17718866 TTGTGTTC
s caeSp111.Scaffold582    145534 8 +   484378 ttcttttc
i caeSp111.Scaffold582  I 11 C 0
s caePb3.Scfld02_0       3266516 8 -  4147112 ttttcttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   270803 8 +   720316 TTATTCTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17295845 44 - 21540570 I
e caeRem4.Crem_Contig15   120522 20 -  1794024 I

a score=34791.000000
s ce10.chrX              2548511 148 + 17718866 CCATTCTCATGAACACCAA--TTTCTCATCAATTAAGAAA----TCCTTATTCGGGTTGAA----TATTCAACAGATGGATTAA---CCAAAAGTGTCATTAGATATTTAG-----------CCATTCAATTAAA----CCGCGCA-TCCCTTCCTTTCATGTGTGCCGC-TTTTGTT
s caeRem4.Crem_Contig15   120542 148 -  1794024 CTATTCTCAAGGTTACACA---TGCTCATCAATTAACTGAAT--GTATTAGTCTAATCAAA----TATTCAACAGATGGGTCGGCACCAAGAAGTGTCATTAGCCATTGTG-----------AGATTCAATTGAA----TCGC-----TCTTTCTTTTTATGTTACCCGC-TTTTCTT
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    145542 148 +   484378 ccaTTCTCATCGTCACAAAAGCGGCTCATCAATTAACTGGGACCCATTTAGTTAACTAGAA----TATTCAACAGATGGATGGG-----AGAAGGGTCATTATGCATTCGG-----------ACATTCAATTCAA----TCGC-----CCATCCTTTTCATGTTTCCCGC-TTCTTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266524 150 -  4147112 ttattttcgtGGTCACAAA---TGCTCATCAATTAACGAAATCCCTTTTAGTTAACTAGAA----TATTCAACAGATGGATCGG-----AGACGGGTCATTATACATGCGG-----------TCATTCAATTCAACCAGCCGC-----CCATCCTTTTTATGTTTCCCGCTTTCTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   270811 156 +   720316 TGATT----TGAACACGCAAATTTCTCATCAATCAGCTCAAC------------AATAGAATATGTATTCAACAGATGGGTTTG--TGCAAAAGTGTCTTTATCTATTCGGTGCCGCTGACCCCATTTAATTATT----TCACAAATTCGATTTCTTTTGTCTATGCCGCCCTGTCAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17295845  44 - 21540570 I

a score=54791.000000
s ce10.chrX              2548659 101 + 17718866 ACCTCTGCTGGGAAGCCGAGCAACGAAATGGACGAAATGAAACCGGAGCACACTGACAGCGTTGCCGACCAAACGGAGACCCTGAA---GTTT-----TCGTTT--------TGGTC
s cb4.chrX              17295889  90 - 21540570 ACCTCCGCCGGGAACCCTAATAACGAAATGGAGCTGATGAATCCCGAGCACAAACTGAGAGCTCCTGTGATTacagaaatcctgaa---aaat------------------------
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig15   120690 100 -  1794024 ACTTCTGCTGGGAATCCTAGCACTGAGATGGAGGAAATGAATCCTGAACACATGGCTAGAGTAGCGCTCGGTACCGatatactgaa---attt-----tttttt----ggtt-----
i caeRem4.Crem_Contig15 C 0 I 45
s caeSp111.Scaffold582    145690  99 +   484378 ACCTCTGCTGGGAATCCGAGCAATGAAATGGACGAGATGAAGCCGGAGCACACAGACAGTGTTGCTGACCAGATGGATACtctgaatttattt-----tatttt-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3266674 100 -  4147112 ACCTCTGCTGGGAATCCGAGCAATGAAATGGATGAAATGAAACCGGAGCACACTGACAGAGTCGCTGACCAAACGGAGACCctaaa---gttt-----tatttttcac---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   270967 101 +   720316 ACCTCGGCTGGGAATCCAAGCAGCGAAATTGAGGAGATGAAACCGGAGCACACTGACAATGTGGCCGACCACACAGAAACTCTgaa---ttttgtttatttgtt-------------
i caeJap4.Scaffold18213 C 0 C 0

a score=-12435.000000
s ce10.chrX              2548760 63 + 17718866 ---------------ATTCTTTACATAC-TTTTCTCGTTTTTTTTCTCCTTTTGTCCTGCTAAAAAT---AATGTCGTCATT
s cb4.chrX              17295979 27 - 21540570 ------------------------------------attacTTAA------------AGCTAG-------AATATTGAGAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    145789 38 +   484378 ----------------atttttactta---------gtttttttt------------tgcaaa-------caTGCCGTCATT
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3266774 52 -  4147112 ----------------gttttcatCTGC--TTTAACGTTTTTCTA------------tacgaaaaatgttcatttctttctc
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   271068 77 +   720316 ttagtttcaactctacttttttattcttgtctatttgtttttttaatgaaagt----AGCAGAAACTGG-GATGttattgtt
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   120790 45 -  1794024 I

a score=58358.000000
s ce10.chrX              2548823 165 + 17718866 -TTATTT--------CTCACCTAGATCCAACCATTGTCGCGTGCACAC--TTTGTTCTTCATTCTCAGTTTTTCGTGATTTTATGAAGCCGTAGGCACTTATTGATATTAAACACGTGAGTAATGTGACGTAGTCAGAGAATTCCA-TTCAGAATTTA---------------ACCTAAAAGA--------AACAAATTT
s cb4.chrX              17296006 163 - 21540570 ----TCT--------CTCACCCAGAACCAAATATGGTGGCCTGCGTGC--TGGGCGCAATATTCGGTGGCTCTCGTGATTTGCACAGACCGTAGCCAGTTATACCAACCATGAAAAACACAAGGAGGATATAATCCACAAGTTCCA-TTCtgtaaaaa--------------tatagaaatca--------ACTAAAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   120835 180 -  1794024 -TTATCA--------CTTACTCAGATCCGACCAT--TGCCTCGCGGGCAGtttgttcctttttttgagACTTTCGAGTTTTGTACAACCCGTACAAAGATATGCCTATCATGCATGAGAACAGAAGAATGTAGTCGGTGAATAgca-ttctgaaacaaaacaactaatgttttaaaaaactga--------tatcaaact
i caeRem4.Crem_Contig15 I 45 C 0
s caeSp111.Scaffold582    145830 163 +   484378 -TTATT---------CTTACCCTGAACCAACCATTGTTGCGTGCACGC--TTTGTTCCCCATTCTGAGGTGCCCTCGATTTTATGAATCCGTAGGTGCTTATTGAAATTAAACAAGAGAATAGAGTGACGTAGTCGAGAATTTCCA-TTCTGTAA--A---------------ATGAGTTTGAG-------AATaaattt
i caeSp111.Scaffold582  I 3 I 124
s caePb3.Scfld02_0       3266828 181 -  4147112 -ttatttttcaattgcttACCCAGAACCAACCATCGTTGCGTGCACAC--TTTGTTCCCCATCTCGAGGTTCCCGCGATTTTATGAATCCGTAGACACTTATTGATATTAAACAAGAGAACAAAGTGATGTAGTCAAATAtctcca-ttctgaaaata---------------atgaaaatgaacgGTTGTAgtgaaatt
i caePb3.Scfld02_0      I 2 I 9
s caeJap4.Scaffold18213   271145 170 +   720316 ttcattttt------cttaccCAGAGCCAACCATTGTCGCGTGAGCAC--TTTGCTCCTCATTTGCGTTCTGTCGAGATTTTATGAATCCGTAGGCACTTATGGATATTAAGCACGTGCAGAGAGTGACGTAGTCTATGATTTCCATTTCTGAATTTA--------------CGTAAATACGA--------AAGAAAATC
i caeJap4.Scaffold18213 C 0 C 0

a score=-12713.000000
s ce10.chrX              2548988 54 + 17718866 AAAAGC---GTGGGACT---------TTCGAGAAAT-------ATGTACAAA-AATAATGATCGAAAATGTTTT
s cb4.chrX              17296169 29 - 21540570 --AAAG---TGTAAACT---------TTGAA--------------ACACATC-TA----GAT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   121015 50 -  1794024 --aaagatatgaaaatt---------ttcaagaaat--------tataTCAC-GA----GATGAGATTAGTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3267018 66 -  4147112 ataAGC---AGAAAACTAGCCATAAGTTGAACAAGCCCAGTATATTTATAAA-GA----GATTGGATTAGTTTT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18213   271315 50 +   720316 -----------AGAAATAAGTATGTATAAAGCAAAT--------ATTATAACAGA----GAtcagattgtttt-
i caeJap4.Scaffold18213 C 0 I 31
e caeSp111.Scaffold582    145993 124 +   484378 I

a score=-4132.000000
s ce10.chrX              2549042 24 + 17718866 ---------------GAAATGATGTCACTGGGACCCACT
s cb4.chrX              17296198 15 - 21540570 ------------GAAAAAGCAAAGTAT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   121065 29 -  1794024 ---------ATCGAAGAACTAATGTAT-TAGGATACTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3267084 32 -  4147112 GATATTCAAAGGGAAAAGCCaatagaa-------acttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   271365 31 +   720316 I
e caeSp111.Scaffold582    145993 124 +   484378 I

a score=1785.000000
s ce10.chrX              2549066 8 + 17718866 ACACAAAA
s caeRem4.Crem_Contig15   121094 8 -  1794024 AAAAGAAA
i caeRem4.Crem_Contig15 C 0 I 16
s caePb3.Scfld02_0       3267116 8 -  4147112 gaaaagaa
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   271396 8 +   720316 aaagaaaa
i caeJap4.Scaffold18213 I 31 C 0
e cb4.chrX              17296213 0 - 21540570 C
e caeSp111.Scaffold582    145993 124 +   484378 I

a score=32087.000000
s ce10.chrX              2549074 362 + 17718866 ------------------ACAAAAATGAGAAAGGGTTTAGA--------------------------------TAGGCTTAAAATTT-CAAAGTTAAGAC---AGGAT-----ACGTGGGTCATGGCTCAGAAGCTGA---GCACACGCGCT-----AC--ACAATGTACATCATGA-----CTTTTCAATTGTTTGTGGCCAAG----ACTGATTTTGTAATGTTTTTCG---CCCATCCCTTTCTATTATTTTCCCA-------TTTGCC---GGCACCA--------TCAC-----T--CAATGAAACAATTT-----ATTAAATCTAT-----GATGA--AATGTTTTATTGGATGAAATCATTTTTTTCCAATTCGCTT---AAATA---------AAAAGTAAAAGAGGAGGTAAAGGAGTATTGCAAAGTGTGTTGACATTGACGAATGGCGGACCATGATGTGTAACAAAACGGAAAGCGTACG
s cb4.chrX              17296213 320 - 21540570 ---------------------------------------------------------------------------GGATTAAAACAG-AAATGTTAAGACCGGGGGGCTCA--AAGAAGGTACAGGCTTAGAA----A----CAAAAGAGCTCTGCCGC--GTTATATAAGAATTC--------------TTGTGACTGCTCGCCGCTTTTTGGTTCTATGATG-TTTCCG---CC--------TCAATTTCTTTTCTG-------CTTTCC---GTCAC--------------------------AGAAC-Gttt-----attgaaaatattcagCCAGATTGAATTCTTTAAGTTGTAGCCCCAGTTTTTT--ATTAAACATTACAAA-------AAGACATTGCAGGGAAAGATTTGAAGGGGGTTCATAAAGTGTGGACACTTCGAAGAGGCTTCGTCCAG--TGT-----AAAAACGTGAGCGCCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   121118 356 -  1794024 ---------------------------aaagtggAGTTAGA--------------------------------GAGgattaaaacagaaaaagttaagAC---AGGGCTCA--ATAGAGGTATAG--TTGGGGGCTCA----CGCAAAAGCT-----GC--ACAATATAAATCTTTG-----CTTTTCAATTGTGTGTGACCACC----CTTGGTTTTGTAATGTTTTCCg---cc--------tccatttttttttttgcaattccaTTCCCTTGTCACCA--------TCATCGGAGC--CA--AGaacaattt-----attaaaaatgt--agccaaac--actttttt----------ctcaatttttt--atacgGCTTTACAAATG-ATGTGAGGCAAAGTGAAGAAACA---GGAGAGGGTTCATAAAGTGCGGACACTTTGACGGGTGACGGATCAA--TGTGTAACAAAACGGCAAACGTACT
i caeRem4.Crem_Contig15 I 16 C 0
s caeSp111.Scaffold582    146117 365 +   484378 ------------------ataaaagaagaaatggagttaga--------------------------------aaggattaaaatgg-aaaagttaAGAC---CGGGCTCA--GTGTAGGTATAC--TTGACGGCTCA----CACAAACGCT-----TT--GCAATATAAATCTAGA----GcttttcaattgtttgtGTCCACC----CCTGGTTTTGTAATGTTTTCct---cc--------tttctttcttcca---------tttgcC---GACAACTTCCCTGCCTCATCGGAAT--CAACAGAACAATTT-----ATTATAGATAT-----GAGAA--AATtcctg----------ttctttttttttctttctgcgTTACAAATA-ATTGAAAGCAAAGTGGAGGAGAG--TTAGGAGGGTTCATAAAGTGCGGACACTTTGACGTATGACGGACCAAAGTGTGTAACAAAACGGAAAGCGTACT
i caeSp111.Scaffold582  I 124 C 0
s caePb3.Scfld02_0       3267128 362 -  4147112 ------------------ttcaaacaaaaagtggaGTTAAA-------------------------------GAAGgattaaaactg-aaaagttaaGAC---AGGGCTTT--TTGGAGGTATAG--TTGAAGGCTCA--AGCACAAAGACC-----TT--CCGATATAAATCTCTG----cgttttcaattgtttgtgACCACC----CTTGGTTTTGTAATGTTTTCCTGTCCC--------cctctttctttccat------tttttct---gtcaaCT--CCCACATCATTGGAAT--CAACAGAACAATTT-----ATTACAGATAT-----GAAAA--A--TCTtg----------ctcacttctt---tttttgctttacaAATATATACGAAGTAAAGTGAGGGAGG----TAGAAGGGTTCATAAAGTGCGGACACTTTGACGTATGACGGACCAC--TGTGTAACAAAACGAGGAGCGTA--
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   271404 416 +   720316 actaaaatcagaaatcatctaaaacaagggaaagacgtaaaatTATTTACGTCAACGAAAAAGAGGACCATGAAGGTATTAAAACGG-AAAAGTTAAGAATA-GAGGCTTACGACGTGGGTTTC---TCAAAAGCACAAGAGCACTAAAGCT-----TtcacaaaaacaaatttttctttttcttttccaatttttgtgaCTAACCATTGCTAGTTTTCTAATATTTTCTC---CT--------CCCAtctatctcttt-------tttttc------------------ccatcAGGACAGCATTAATGCGTTttcaatcataaaaaataa-----aaaaa--acctttgg--------acatctttttttt--gttc--------aaaaa-tcgcCAAGAAAAACGTGGGAGATATAAGAAATAGTTGACCAAGTGGTGGCACGTTAACG-GCGACGGA-CAT--AGTGTAACAAAACGGACGTCGTGAG
i caeJap4.Scaffold18213 C 0 I 22

a score=-601.000000
s ce10.chrX              2549436 7 + 17718866 CATTTAT
s cb4.chrX              17296533 7 - 21540570 CACACAC
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig15   121474 7 -  1794024 CACATCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146482 4 +   484378 CACC---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267490 0 -  4147112 C
e caeJap4.Scaffold18213   271820 22 +   720316 I

a score=-3146.000000
s ce10.chrX              2549443 38 + 17718866 GTGTTGAACGCGGGTGCTCACGCGAGGCTTTACTATTT----------
s caeRem4.Crem_Contig15   121481 33 -  1794024 -----GAACGGA-----CCACGGATCTCT-----ATTTCCTTATGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146486 34 +   484378 -CGGCGAACGGG-----ACGAGTAGCACGCGacaattttc--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3267490 33 -  4147112 ---GTGAACGGG----CCCAAGTAGCACGCgacacttttc--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   271820 22 +   720316 I
e cb4.chrX              17296540 44 - 21540570 I

a score=3060.000000
s ce10.chrX              2549481 23 + 17718866 TTTCAATTCTCATTTCTTACTTT
s cb4.chrX              17296584 18 - 21540570 -----ttttctttttcttctttt
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig15   121514 11 -  1794024 ------------CTTCGTCTTTt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146520 17 +   484378 ------tttctatttctttttgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3267523 17 -  4147112 ------ttttcgtttctttttat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   271820 22 +   720316 I

a score=-2038.000000
s ce10.chrX              2549504 8 + 17718866 TTTAATCT
s cb4.chrX              17296602 3 - 21540570 -----tct
i cb4.chrX              C 0 I 106
s caeRem4.Crem_Contig15   121525 3 -  1794024 -----cta
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    146537 8 +   484378 gtgagaca
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3267540 3 -  4147112 -----cCC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   271842 8 +   720316 TTTGATTA
i caeJap4.Scaffold18213 I 22 C 0

a score=49303.000000
s ce10.chrX             2549512 40 + 17718866 AAAA---ATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTT
s cb4.chrX              4723464 40 + 21540570 aaaa---gtttcgctCCCGGGTGGGCTCGAACCACCAACCTTT
i cb4.chrX              n 106 C 0
s caeRem4.Crem_Contig15  121545 40 -  1794024 aaaa---gtttcgctCCCGGGTGGGCTCGAACCACCAACCTTT
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582   146546 40 +   484378 aaaa---gtttcgctCCCGGGTGGGCTCGAACCACCAACCTTT
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0      3267544 40 -  4147112 AAAA---GTTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213  271850 43 +   720316 AAAATGCATTACGCTTCCGGGTGAACTCGAACCAACAATCTTt
i caeJap4.Scaffold18213 C 0 I 517

a score=56585.000000
s ce10.chrX             2549552 42 + 17718866 CGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCA
s cb4.chrX              4723504 42 + 21540570 CGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCA
i cb4.chrX              C 0 n 0
s caeRem4.Crem_Contig15  121585 42 -  1794024 CGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582   146586 42 +   484378 CGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0      3267584 42 -  4147112 CGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213  272410 42 +   720316 CGGCTAACAGTCAAACGCGCTGCCTATTGCGCCACGAATGCG
i caeJap4.Scaffold18213 I 517 C 0

a score=1500.000000
s ce10.chrX              2549594 1 + 17718866 C
s cb4.chrX              17296711 1 - 21540570 C
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig15   121627 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146628 1 +   484378 C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3267626 1 -  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   272452 1 +   720316 C
i caeJap4.Scaffold18213 C 0 I 826

a score=-1316.000000
s ce10.chrX              2549595 48 + 17718866 ATGAACCGG-ACGGGAAGACGGTCAAATACGTGTTAAAGGAAAGAGTGA
s cb4.chrX              17296712 49 - 21540570 ACGAGTGAGAGAGGGGCGTAGACTTGTTACAtgcaacagaaaaaatgga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   121628 48 -  1794024 ATTAGAGAG-TAGAGGCGAAGGTCGGTTACATGCAAGTAAACCAAGCGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146629 36 +   484378 ATGAGAGGA-GAGGAGTGTtggga--------aaacaaaaaccgg----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3267627 44 -  4147112 ACGAGAGTA-TAGAGACATGGGGCGCTTACATGAAGAAAAACCGA----
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18213   272453 826 +   720316 I

a score=-1097.000000
s ce10.chrX              2549643 10 + 17718866 GAGATAGAGA
s cb4.chrX              17296761  2 - 21540570 ga--------
i cb4.chrX              C 0 I 466
s caeRem4.Crem_Contig15   121676 10 -  1794024 CAAACAGGCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146665 10 +   484378 CAAACGGACA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267671 30 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I

a score=-3856.000000
s ce10.chrX              2549653 35 + 17718866 GTCAAACGAGAAACAC--------------GCACACAATGTGACAACAG------
s caeRem4.Crem_Contig15   121686 42 -  1794024 ---------GGAAGACTGCTTGAGGGGAAGGGACATGGC----CAAAAAGTTAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    146675 15 +   484378 ------------------------------GGCGTCAGT----CAGCAG------
i caeSp111.Scaffold582  C 0 I 1
e caePb3.Scfld02_0       3267671 30 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I

a score=-884.000000
s ce10.chrX              2549688 18 + 17718866 AAATGTT-TGTGTGGCTTG--
s caeRem4.Crem_Contig15   121728 13 -  1794024 --------TTTGTGTTATTTG
i caeRem4.Crem_Contig15 C 0 I 109
s caeSp111.Scaffold582    146691 19 +   484378 AAACCTTCTTTGCGCCGTT--
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3267701 17 -  4147112 AGACGT--TTGGCGCCTTT--
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I

a score=-4740.000000
s ce10.chrX              2549706 104 + 17718866 T---TGTGGAGAGTCACAATGATTATGAACTTCTTTATGCA-----------TATGGTTTATAA-----TAAGTT----AAACATTTTAATACTAAAATGTTGCTAAGCTGGTCT---------------------CAAGGACAAAAT-----------
s caeSp111.Scaffold582    146710 134 +   484378 TGAGTGCCGACC---------------AATTTCTCAATGCATTTAtaatgtttttgttatttcagtttcaatatt----gaaactttcaaaacaggaagg------aattgttttcataaaatatttgaactattcagatttcgaaacaagattaaaat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3267718  92 -  4147112 T---Tgaggatt-------------tgaattttttcatgca-----------TGTGTTATTGAAGAATATATGTCcagagaaattttcaatgcataCAAG--------TTGTTCT---------------------AGATAGTGAAAT-----------
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeRem4.Crem_Contig15   121741 109 -  1794024 I

a score=-705.000000
s ce10.chrX              2549810 24 + 17718866 GTGACA-TGACACACCATG-GGTCAG
s caeSp111.Scaffold582    146844 26 +   484378 ttcatattgaaaCCTCAAACGTTTCA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267810 76 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeRem4.Crem_Contig15   121741 109 -  1794024 I

a score=4025.000000
s ce10.chrX              2549834 72 + 17718866 ---AGAAATGTGATTTGAAAAAAGCGCGCGCAAAAGCATAAGCGGAAACAACACGCAAATGGAAAGAAAAGAGTG
s caeRem4.Crem_Contig15   121850 73 -  1794024 agaaaagattTTCTATAG-AAATGCCCGCGAAAAATGAAAGGATGAAG-GACATttgaatgagagagagagagtg
i caeRem4.Crem_Contig15 I 109 I 118
s caeSp111.Scaffold582    146870 66 +   484378 ---ACaaatttcatattgaaaatgcgcgcgaaaac--aaaagaagaag-gacgtTTGAATGAGAGAATGAGA---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267810 76 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I

a score=1021.000000
s ce10.chrX              2549906 32 + 17718866 TTAGAGAGATGTGCCATCAATTTCGAAATGAG
s caeSp111.Scaffold582    146936 32 +   484378 TGAAACGGAGGGCCCATCAGTTTCGATATATG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267810 76 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeRem4.Crem_Contig15   121923 118 -  1794024 I

a score=-877.000000
s ce10.chrX              2549938 38 + 17718866 GCACCGCTTAATAATG-------GCCTAGAAATTTCTCTTACACA
s caeSp111.Scaffold582    146968 31 +   484378 -------TTACGCGTG-------ACTAAGACGTTTTACTTCCGTA
i caeSp111.Scaffold582  C 0 I 30
s caePb3.Scfld02_0       3267886 45 -  4147112 GTATAGCTTGAGAGCGGGTTGGAAACAGGACTGTTTAGTAAACTA
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeRem4.Crem_Contig15   121923 118 -  1794024 I

a score=543.000000
s ce10.chrX              2549976 38 + 17718866 TTTCCTACGCCAAATGTGA----TAATGCTCAATTCATGGTG
s caePb3.Scfld02_0       3267931 42 -  4147112 TTCTGAACACcaaacgaaaattcaaatactacattcaaaatg
i caePb3.Scfld02_0      C 0 I 439
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeSp111.Scaffold582    146999 30 +   484378 I
e caeRem4.Crem_Contig15   121923 118 -  1794024 I

a score=0.000000
s ce10.chrX              2550014 4 + 17718866 CATC
e caePb3.Scfld02_0       3267973 439 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeSp111.Scaffold582    146999 30 +   484378 I
e caeRem4.Crem_Contig15   121923 118 -  1794024 I

a score=97.000000
s ce10.chrX              2550018 14 + 17718866 AAAGGAATCTGCTT
s caeSp111.Scaffold582    147029 12 +   484378 aaagtgacCCGC--
i caeSp111.Scaffold582  I 30 C 0
e caePb3.Scfld02_0       3267973 439 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeRem4.Crem_Contig15   121923 118 -  1794024 I

a score=-21999.000000
s ce10.chrX              2550032 551 + 17718866  
s caeRem4.Crem_Contig15   122041 288 -  1794024  
i caeRem4.Crem_Contig15 I 118 I 3
s caeSp111.Scaffold582    147041 244 +   484378  
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3267973 439 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I

a score=0.000000
s ce10.chrX              2550583 4 + 17718866 AACT
e caePb3.Scfld02_0       3267973 439 -  4147112 I
e caeJap4.Scaffold18213   272453 826 +   720316 I
e cb4.chrX              17296763 466 - 21540570 I
e caeSp111.Scaffold582    147285 0 +   484378 C
e caeRem4.Crem_Contig15   122329 3 -  1794024 I

a score=-11115.000000
s ce10.chrX              2550587 63 + 17718866 ACTTATTC--CTCTTGTTTGTCAACAAAATTTTTATCTCTGGTAATCTCTCAATTTCATATGCTA
s cb4.chrX              17297229 50 - 21540570 acttttct--tcttttttaatcaataaaatgtgttttt----------gtcaa---caagaattt
i cb4.chrX              I 466 C 0
s caeRem4.Crem_Contig15   122332 30 -  1794024 tctcttctgctcttctctg-----------gtgctttt------------------------ttt
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    147285  3 +   484378 --------------------------------------------------------------ctt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3268412 38 -  4147112 acttcttt--tgtttatttgtcaacaaaatat-ttttc------------------------ctt
i caePb3.Scfld02_0      I 439 C 0
e caeJap4.Scaffold18213   272453 826 +   720316 I

a score=43193.000000
s ce10.chrX              2550650 76 + 17718866 -TCCTTTTCTTCTTT-TTTTCTTCTT----TCATTTCTCCAGTTTTTGCTTCAATCGTCCAG-TGTGGATTTCATTATCCTCT
s cb4.chrX              17297279 82 - 21540570 -tgttttcctccttctcatttttttccatttctttttttccgttttccctCCACCCGACCGGCTGTAGATTTCATTATCCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   122362 77 -  1794024 -cttctttccccttcccctttctctc----tcATACCCTTAGTTTTTGCTCCAATCGACCAG-TGTCGATTTCATTATCCTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    147288 75 +   484378 -cttttttcatctct-tttttctctc----tcattccctcagttt-tGCTCCAATCGACCAG-TGTCGATTTCATTATCCTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3268450 69 -  4147112 -tttttcttttctctgtttttctctc----ttattcctttagtttctGCT--------CCAG-TGTCGATTTCATTATCCTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   273279 69 +   720316 ttccctttttccttctttttttcttc----attttcccttctttttcAC---------CCAG-TGTCGATTTCATTATCCTCT
i caeJap4.Scaffold18213 I 826 I 956

a score=23922.000000
s ce10.chrX              2550726 212 + 17718866 CTCTCTCT-------CTACAACCCCCGAGCTTTACGAGTTT----TTAC--GAAAACAACACACGCA-----CTATTTTCTTCCCTTGTAATTATTGATTCCAAATAAATAAATAAATTTCAAAAAAAGACGGAAAAGGAAAGGATGAGAAAAGTAATCATGCGCAAAAAAGCAAATGACCG-TTGTCC-TAAGACCT-CCGTGC----TCTT---------TTGCTCGCTGTGTCGCATCGATCT
s cb4.chrX              17297361 184 - 21540570 TATTTCTCAGTTGTACTAGTACCTCCGTC----------------TCCCTAAAAAACTACTCGCGCAGCTAG------------------------GATTCCA--TGC---AATGAAAAGTAGAGACAG-------AgcagaaagaggaaaaagtaATCATGTGCCAAAGA----ATGATGACCCATCC------CTTCCCCCGCTAGTCCTATCTAAAGCGTTTCTCGCTGTTTCGCATCGATCT
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig15   122439 186 -  1794024 CTCTGCTT-------CTACTACCTTCAGC----------------TCGT--AAAAACAACTCGCGCAACCAACCATTTCTTC----TCCGTCTATTGATTCTAGCTTC---AAGgaaatataaaagaa-----------aaagatgggaAGAAATAATCATGTGCCGAAGA----ATGATGAGCTATTC-TAAGACCTCCCATGC----CCTTT--------TTGCTCGCTGTGTCTCATCGATCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    147363 174 +   484378 TC-------------CTACTACCTCCAGC----------------TCGT--AAAACG---TCGCGCAAccaactattttttta---ttcatctATTGATTCAAACTGCGCATGTAAAAGCATGGGA---------------GATgcacaaaaaataatcatgTGCCAGTGAA---ATGATGA-CCATCCTTAAGACCTCCCA-------TCTC---------TTGCTAGCTGTGTCCCATCGATCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3268519 189 -  4147112 CC-------------ATACTACCTCCAGCACTGAC--ATTCAGCATCGT--AAAAATAACTCGCGCACTCAACCATTTCTC-----CTCAACTATTGATTCTGGC------aataaaaactggaaaaa-----------aggatggaaataaaataatcaTGTGCCGAAGAG---ATGATGA-CCATCC-TAAGACCTCCCATGC----TCTT---------TTGCGCGCTGTGTCGCATCGATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   273348 956 +   720316 I

a score=-1758.000000
s ce10.chrX              2550938 25 + 17718866 ACGAAATAAAAAGTTGTCTGAATAG-----
s caeRem4.Crem_Contig15   122625 16 -  1794024 --------------TTCTAAACTAGTccgg
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    147537 11 +   484378 --------------TCCTTTCATAG-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3268708 11 -  4147112 --------------TCCCAAAGTAG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   273348 956 +   720316 I
e cb4.chrX              17297545 21 - 21540570 I

a score=29736.000000
s ce10.chrX              2550963 182 + 17718866 ---------TATT--CCTTTTTCTTGT--------TTT------TTTTTTGTTTTCA------TGTTGCAATTT--------------------CAAACTAAAAAAT-TTGTTTTGATGCCAACGTTGTTCAG-TAGCCAAAACACCTGC-TTCT-GACTAG---AA---AAAGTGAAAAGGTGCATAAATAATGAAAACAAATTAGGCGTAATCCCACCTGCT----CTAGTTGTCATGGCGATTT
s cb4.chrX              17297566 181 - 21540570 ---------tttt--ttctttttttgt--------ttc------cccaattttttgaatatcttgtTGTTGTGTCCAGAAAGAGG---------AAGACAAAAACATGTTGTCTTTCTG-CATGGTTAG------GTCAGACACAGTTGCTTCTT-GAG------AG---AGGGGGATAAGGTGCATAAATAACAAAATGAAATTAGCCATCATTACATCTG---------GTTGGCATGG------
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig15   122644 198 -  1794024 ---------tttt--ttttgttgttgt-----atgttg------cattgtgttttgaaaa---tgttgttgtgtcctcgaaaaag--------------aaagacatGTC-CCTTTCTG-CGTGATTGGCCAA-TAGCCGAAACATCTGC-TCTT-aagacgaaaaa---agagagaaaaggtgCATAAGTAATGAAAACAAATTGGGCGTAATTACATCTGCT--TGAATGTTGACATGGTGATTT
i caeRem4.Crem_Contig15 I 3 I 236
s caeSp111.Scaffold582    147548 227 +   484378 AAGaagacttttttcttgttttgttgtCTCCTATGTTG---CATCCTCGTATTTTCAAac---tgttgttgttttcttggagagaagaaacgagAGAATAAGAA----ATAGGTTTCTG-CGTGACTGGTCAAGGCGGAGAAACATCTGC-TCTT-TACgtga--aa---aaagtagaaacaTGCATTAGTAATGAGGACAAATTAAGCGTGATTACATTTGTT--CACTTGTTGCCATGACGAttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3268719 236 -  4147112 TTTGAgtcctttt--ttgttgttgcgTCTTGCATGTTGCTTCAtccttttattttcaaat---tgttgttgttttctgagaaagGGGAAACGA-AGAACCAGAATATGTTAGGTTTCTG-CGTCGTTGGTCAA-GCGCCAAAACATCTGC-TCTTATGGgcga--aattttgagaagaaaggTGCATTAGCAGTGAAAACAAATTAGGCGTGATAACACCTGTTTACATGTGTTGGCATGGTGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   273348 956 +   720316 I

a score=-3789.000000
s ce10.chrX              2551145 43 + 17718866 TT---GTTATGATGTTGTTTTAAAATGTTTGCTTCATTTTTTGCTT
s cb4.chrX              17297747 31 - 21540570 TTACGattcagtttttggattttcggaacaG---------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    147775 41 +   484378 -----ttacggctttttgttttgagagatggcttttctcttttatt
i caeSp111.Scaffold582  C 0 I 63
s caePb3.Scfld02_0       3268955 41 -  4147112 -----CTTTCGGGTTTTGTTGACGAGAATCACTTCTTACTCAGGTT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=-2455.000000
s ce10.chrX              2551188 34 + 17718866 GTTATGTGTTT-----TTGTGTCATTTTTCAAGAAAACA-
s cb4.chrX              17297778 17 - 21540570 ----------------CAGTATTc-------gtaaaaact
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3269002 36 -  4147112 ---AACTTTTCCTATGTTGTACTCTCTTTCAGTGAAACA-
i caePb3.Scfld02_0      I 6 I 115
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816 63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=379.000000
s ce10.chrX              2551222 275 + 17718866 TTGAATTTCATGAAGAAA--AATATACAGATTGAAAAGTTTCTTAAAGCTGCaa--aatattcta----attctatataa------attattttaaaaatGTATGACAGAGTTGGGTTCTTATTTCCGACAAAATTTTTT----CCTTT---CTTCTCAGTGATGAGTGATT------GTGATAGAA-------ACTGACAGATTATTTTCCAATTGCTCATTATGAGCACAACTCTAATAAAAACTCAAA-----ACTCAATTGCAAGCT-----ATATTAAAACCTAATACTATTAAATAACTGTTTTCAATTTTTA
s cb4.chrX              17297795 290 - 21540570 aaaaatatca-aaagaaagcaaaaTTCATCTTTTATAAGTTCTCCGATATGCAGTTGAtattttatgatatttttcataataagacacttttttaaaaacctatGGC---------CCTTTAAACTTTATAAACCTTTTGAAAACCTTTAAACCATTCAAAAACATGTGATTCGAAATgagatacaattttttaactggaaaatttttctctaacttc-cattg-------aaaaccaaaaaaagccaaaattaGCACTGAAATGAAAGTTGAGACATTTGAAAACC-----------AATTACCGCATTTAACCGTCA
i cb4.chrX              C 0 I 143
e caePb3.Scfld02_0       3269038 115 -  4147112 I
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816  63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=0.000000
s ce10.chrX              2551497 153 + 17718866 CCATAATATCTAAAAACTTAGCTTTGGTGGAACtaaagtttccatgcaggcgcgaaaatgcctgccgcgctaactctgcggcgaacttcgcctgtcttgcgcggcgagcctcgccacctgtatagtgcggcgcagaagccgaaaagtgtcggc
e caePb3.Scfld02_0       3269038 115 -  4147112 I
e caeJap4.Scaffold18213   273348 956 +   720316 I
e cb4.chrX              17298085 143 - 21540570 I
e caeSp111.Scaffold582    147816  63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=45.000000
s ce10.chrX              2551650 79 + 17718866 cgcgtcga--------------aaaaaccgtctttcgcaccat----cttgtgtaatcaccaagcctttgacttctcgccatagtgcagaaatgaag
s cb4.chrX              17298228 82 - 21540570 CGCTTCGAGTTTCTATCaaaagaaatacggtatctcgCTTCATAGGattcgttt--tcaaaaa----ttgact---------aatACAAAAAAGAAT
i cb4.chrX              I 143 I 45
e caePb3.Scfld02_0       3269038 115 -  4147112 I
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816 63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=0.000000
s ce10.chrX              2551729 65 + 17718866 cgagaggccggcaggttggaggcatgcgccaggcactgaaaccgcgactacctcccatggatgtc
e caePb3.Scfld02_0       3269038 115 -  4147112 I
e caeJap4.Scaffold18213   273348 956 +   720316 I
e cb4.chrX              17298310 45 - 21540570 I
e caeSp111.Scaffold582    147816 63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=-892.000000
s ce10.chrX              2551794 203 + 17718866 gtaGTGGTAACCCGTTTCTAGACCGATTTATGTT-TGCTTTAACTCGAAACAAAATCTCTCAAAAAATTCAAACGTTTTTTTATGGTTGGGCTTATTTTAGCTAAAATTAGACAATtttttgagaaatttttgagaagtttcattataaaaagtttccttgtaaacacattttggctctttacgtttaaaatcgtcACTCCTTC
s cb4.chrX              17298355 158 - 21540570 ATTGTGGAAGACCTTTTCGGGACTTTAAAATGTAATGTTTCCACTGAAAACG-------CCAACATat---gacatatttttgt-------------tttgcgGAATTTAGA-----TGTTCCAAATGctccaatatatttttttcgaaaaagtctGATTGTCAA------TCTGCCCGTGGAGT---AAACCGG---------
i cb4.chrX              I 45 C 0
e caePb3.Scfld02_0       3269038 115 -  4147112 I
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816  63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=579.000000
s ce10.chrX              2551997 28 + 17718866 AATCATTGTTC--AAAAAGCTTTCACATCC
s cb4.chrX              17298513 17 - 21540570 -------------AGGGAATTGTAATATTC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3269153 30 -  4147112 AATCATTGTGTATATGAAAACTTCACATTT
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816 63 +   484378 I
e caeRem4.Crem_Contig15   122842 236 -  1794024 I

a score=-1308.000000
s ce10.chrX              2552025  8 + 17718866 ----------TCACACCC
s cb4.chrX              17298530  7 - 21540570 ----------TCACTTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   123078  7 -  1794024 ----------tcacttT-
i caeRem4.Crem_Contig15 I 236 C 0
s caePb3.Scfld02_0       3269183 16 -  4147112 TGTATCTTTCACACTT--
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   273348 956 +   720316 I
e caeSp111.Scaffold582    147816 63 +   484378 I

a score=4123.000000
s ce10.chrX              2552033 9 + 17718866 TCAAAGTGC
s cb4.chrX              17298537 9 - 21540570 TAAATGTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   123085 9 -  1794024 TATAAGTGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    147879 9 +   484378 TTGAAGTGC
i caeSp111.Scaffold582  I 63 C 0
s caePb3.Scfld02_0       3269200 9 -  4147112 CCTAAGTGC
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213   273348 956 +   720316 I

a score=261851.000000
s ce10.chrX              2552042 534 + 17718866  
s cb4.chrX              17298546 576 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   123094 511 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    147888 490 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3269209 510 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   274304 447 +   720316  
i caeJap4.Scaffold18213 I 956 I 692

a score=47788.000000
s ce10.chrX              2552576 243 + 17718866 CAGTTAGCGTT------TATGAGCGTTTAT------CTTGAGACCGATACCAATTTTATTTCATTT-TGTTGGCAA------AACCCCAAAATGACTGCCGATTTTCATCCGA-------TTGGTTCTTCCTT--------TTAGTGTGCGTGTTTGAATAGAAACTTGATCGCTCTCCGTGAGTTGAGCTTTAG-----CTTCTACTTCAGAGATCT----AATCCTTGACACCAACCACCTGACGTTTA---GCGTGTCTAT---CCGGATCTA-------------TTCGGATTGAATTTTA
s cb4.chrX              17299122 224 - 21540570 CGTTTATAGTCCACAGTCAAGA-CGTTTATGGCGG-TT-------AATTTCAATTGGTTTAGAGTT-TTTAGTTAC------TG--GGAGATTGTC---CCATTTTTGTTAG-----------------------------TTGGTGT--GCGTGCAAATAGAAATTTGATCG--CTTCATGAGTTTagcttctttctctctttttcttcagaGATCCTCCAAATCCCTGG----GACCACCTGACGTTTGTATGTATGTCTCTCTGTCGGATTTAAATTTA-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   123605 217 -  1794024 tctttaTAGTC------AAAGA-CATTTATGGCGG-TTCGAGAACGATACCAATTTTATTCCCGTCATTCAGTCGT------AA--CCAAAATGTT---TTGGTTTTATTTGA-A----------TCTTCCCT--------TTAGTGT----GTTTAAATAGAAATTTGATCG--CTCCGTGAGTTTAG-----------CTTTAGCTTCAGAGATCC----AATCCTTGACACCAACCACCTGACGTTTG---GCTCATCTAT---TCCGATGTAAATTTA-----------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    148378 255 +   484378 --TTAATAGCC------AAAGA-CGTTTA-------TTCGAAACCGATACCACTTTTATTACTTCCATCCAGTCAGTCGAGAAA--CCAAAATGTTG--TTGGTTTCACTCGG-ATTTGACTGCTTTTTCCCTTTTAGTG-TATGCGT--ATGTTTGAATAGAAACTTGATCG--CTACGTGAGTTGGG-----------CTTTCTCTTCAGAGATCT----AATCCTTGACACCAACCACCTGACGT------TGAAGTCTAT---CCGGATATACATTTATCAATGTTTCGGATGGCATTTCA
i caeSp111.Scaffold582  C 0 I 50
s caePb3.Scfld02_0       3269719 259 -  4147112 tctttatAGTC------AAAGA-CGTTTATGGCGGTTTCGAGACCAATACCACTTTCATTATTTCC-TTCACCCGATTG---AA--CCACA--------TTGTTTTCATCTGTCATTTGGTTCATTCTTCCTTTTAACCGCTTTGTGT--GtatttgaatagaaatgtgATCG--CTCCGTGAGTTTAG-----------CTTTTGCTCCATATATCT----AATCCTTGACACCAACCACCTGACGTGTG---GGACGTCTAT---CCGGATTTAAATTCATCTATGTTTCGGATGCCATTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   274751 692 +   720316 I

a score=-3446.000000
s ce10.chrX              2552819 10 + 17718866 TCAATATTGC-------------
s cb4.chrX              17299346  6 - 21540570 TT----TGTC-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   123822 10 -  1794024 TCAGTGTTTC-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3269978 19 -  4147112 ----TGCACCTTCACAACATTGC
i caePb3.Scfld02_0      C 0 I 289
e caeJap4.Scaffold18213   274751 692 +   720316 I
e caeSp111.Scaffold582    148633 50 +   484378 I

a score=-4935.000000
s ce10.chrX              2552829 80 + 17718866 CAAGGAACATAACTTTCAGTTTTATTATGAGCCATGACGTTCTGA-------AGTCGGTCAAAATGCGTTTTTATTTATTTTTCAAA-
s cb4.chrX              17299352 72 - 21540570 A---------GTTTGGCACTTTCATAAT-ATTCATG---TTCTGACAAGAACAGCGGATTAAAGGGCG--Cgtaacaaattttcaaa-
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15   123832 39 -  1794024 C---------GGATCGCACTTATGTAAT-ATaagtg---------------------------------------aaaattgtaaaaa
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I
e caeSp111.Scaffold582    148633 50 +   484378 I

a score=55.000000
s ce10.chrX              2552909 54 + 17718866 AATCTAGTGGAGTTTTGTCAGTAGGAGTCTAAAACG---ATCAcaaatatcaaaata
s caeRem4.Crem_Contig15   123871 52 -  1794024 gaaCAAG---GATTTTGAATGAAGGGGTTTCAAATGGAAAttataaactttgaaa--
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I
e cb4.chrX              17299424 29 - 21540570 I
e caeSp111.Scaffold582    148633 50 +   484378 I

a score=-10052.000000
s ce10.chrX              2552963 231 + 17718866 -----gaacaattcaaaacattttggtttttttttaagtttccaagttttaaagttttggcaaattgccaaattttttgaaaaatctagaccttGAGAATACGTATACATGAATAACacaaatttcaagtttaaaaaa---tcgtagacacaatttttttaaatcgtattcttaaattatcagtgggcaaaaactgtcactttttgacagtaaataaaacatttccagt---------tatttttggt-
s cb4.chrX              17299453 107 - 21540570 -----gaaaaattgaaaa----ttgg---tattcaaag--------------tgtttttg-gaatt-----------caaaaa----------------------------aaaaccccaatttttaagtttaaaaAGCGCTGTTAAAG-------------------------------------------ACTGATAAACCAGT--------------------------------TATTTCTAGT-
i cb4.chrX              I 29 I 93
s caeRem4.Crem_Contig15   123923 208 -  1794024 atgttgatttctttaaaa----ttttccctATTGCAAGCTGc----------tgtttttgtgaatt------tcatcTAAAGAGT---GGC----ATAATGCCTATGTTTGAATACTgccaattttgaattcaaaagg---TTTTGAAGGAA----TTTCACATTTCAATC-TATGTTCCCACTT------CACCGTTATATTACTACACGCGCCGCCACTTTCTCTGCCATTCACAACGTTTCCAGCC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I
e caeSp111.Scaffold582    148633  50 +   484378 I

a score=-940.000000
s ce10.chrX              2553194 107 + 17718866 tgaaaagttttactattTGTTTTTTTTTGACGCTATAGGAGCTGGCGCTACTTGTGTTGTATACTTTGCAAATGGTCAGCAAATTTTTTGTAACCTTGATTTCATTA
s caeRem4.Crem_Contig15   124131  50 -  1794024 --------TttactctctctttttctcttgtgC---GGCGCCCGGCGCT-CTCAAGTTGTCT---------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I
e cb4.chrX              17299560  93 - 21540570 I
e caeSp111.Scaffold582    148633  50 +   484378 I

a score=121.000000
s ce10.chrX              2553301  94 + 17718866 AAACAAAAAAAAAACAAAAAATCAACTTTATGCTACTGTCCCACCATGTCAACAACATCACTA----------------TTATTATATTTAAAGTGAAAACAGCTTAAAA
s cb4.chrX              17299653 106 - 21540570 AAACACcgtaattaaaaaaaattgtcttcaTCTTTCTAATGTAATTTGTTAA----ATTGCTAAcagatgtttcattttttgatacatttttcgaaaattctatttcaaa
i cb4.chrX              I 93 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I
e caeSp111.Scaffold582    148633  50 +   484378 I
e caeRem4.Crem_Contig15   124181   0 -  1794024 C

a score=-23595.000000
s ce10.chrX              2553395 162 + 17718866 --------------------------------AAAAAAAAGTCACGCCCAGTACTAGTTTTCCGAAGGTTTTCTTTCCTCTTCTTGCCACTAATTTTTTTCGTCTAT-----------TTCTTTGAGTCTCTTTCAATTGAAATGTTTTTTTTTTCGC----------------CGATGTCTGCCAAAATGTAGATGGCTTTTGCTTCTCTATCtcccaga
s cb4.chrX              17299759 171 - 21540570 ------aaatgcctcT----------TCCTACGAAATA------------Aagcctattttcaaa-----ttcttctctgcgt----ctctcatttcttctggcaac-gcactcgaaatttttc---tctcttccttct------tctcttctgcCACTCGCTCCCCAGCGCCCCAGTGCTCGCT---ATGTCTTCCTGCTATGCCTATCTCACCAATGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   124181  27 -  1794024 ------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCAC--------------------------------------------CGCCTAGCTTGCCAATGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    148683 187 +   484378 AATAGAAAGTAACTTTTGGTATATAATGTTACGAAATATACTTCCACTTTATAACAATTTTCCGC-----TACTTTTATTCGTtcgccttctttttcttttgccaacagcaacc---cttcctc---tctctttctctt------tcttctctgaCCC--------------CGTGGCGCCTGGC---ATGTCTTTAAGTTTCGCTTTGCTTATGATCGTG
i caeSp111.Scaffold582  I 50 C 0
e caePb3.Scfld02_0       3269997 289 -  4147112 I
e caeJap4.Scaffold18213   274751 692 +   720316 I

a score=109386.000000
s ce10.chrX              2553557  85 + 17718866 tcctcggtagtatagtggtgagtatccgcgtctgtcacatgcgagacccgggttcaattcccggccgGGGAGAACACTTTTTGCT------------------
s cb4.chrX              17299930  84 - 21540570 TCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATTCCCGGCCGGGGAGAAATCTTTTTGC-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   124208  84 -  1794024 TCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGacccgggttcaattcccggccggggagaaatcttttttt-------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    148870  85 +   484378 TCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATTCCCGGCCGGGGAGAaatctttttgct------------------
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3270286  85 -  4147112 TCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGagacccgggttcaattcccggCCGGGGAGAAATCTTTTTGCC------------------
i caePb3.Scfld02_0      I 289 I 17
s caeJap4.Scaffold18213   275443 103 +   720316 TCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATTCCCGGCCGGGGAGAAATCTTTTTGcgaatttcgaatttccaTTT
i caeJap4.Scaffold18213 I 692 C 0

a score=-816.000000
s ce10.chrX              2553642 12 + 17718866 GCTGATTTGCGT
s cb4.chrX              17300014  6 - 21540570 ----GTTTTC--
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   124292  8 -  1794024 ----gttttctc
i caeRem4.Crem_Contig15 C 0 I 12
s caeJap4.Scaffold18213   275546 12 +   720316 GCCATTTCACAT
i caeJap4.Scaffold18213 C 0 I 18
e caePb3.Scfld02_0       3270371 17 -  4147112 I
e caeSp111.Scaffold582    148955 26 +   484378 I

a score=12754.000000
s ce10.chrX              2553654 100 + 17718866 TAGAATTATTGT---------CTTCCGCTTCAGATGGTATCTCTCTCTTCCGCTATTTTCACTCAACTTTCTATATATGTCCGCCACCCTGTAATTATGATC---TTCATCG
s cb4.chrX              17300026  81 - 21540570 ----TACAATCG---------CTTCCGCTTCgaatct------tttttgattttctatttctc--------tctATTTGC-CACCACCCTGTAATTATGATC---TGTATCG
i cb4.chrX              I 6 I 25
s caeRem4.Crem_Contig15   124312  91 -  1794024 ----CATAATCATAGTTTACCCTTCCGCTTCGAATCT------TCTCTTCcgctatttttcat--------tttatttatgCATTGCCCTGTAATTATGATC---TCTATCG
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    148981  91 +   484378 TCAACTTATTAG---------TTTCCGCATCAGATCG------CCTCTTCCGCTATTTTCCCCA------TTTTATTTGTGCACTACCCTGTAATTATGATGATCTCTATAG
i caeSp111.Scaffold582  I 26 I 2
s caePb3.Scfld02_0       3270388  77 -  4147112 GGAAGTGAATAA---------CTTCCGCTTCATATCA-------CTTTTATGCTATTTTCACC--------------TATGCATTGCCTTATAATCCAAATA-----TGCGG
i caePb3.Scfld02_0      I 17 I 2
s caeJap4.Scaffold18213   275576  76 +   720316 TATATCTATTAC---------CTTCCGCATCACATAA---------CTACTTTTATTTCCACT---------CTATTTATGCA---CCCTGTAATTATATTG---ATTC---
i caeJap4.Scaffold18213 I 18 C 0

a score=-6832.000000
s ce10.chrX              2553754 27 + 17718866 A-CCTCGTATATAACCTATC-------CTACCGAT---
s caeRem4.Crem_Contig15   124403 34 -  1794024 ACACTCG-ATGCCATCTCTCGATGCATTCACCTAT---
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    149074 28 +   484378 --ACTCG-ATGCCGTCCCTT----CATTCACCTAG---
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3270467 28 -  4147112 --ACTTG-ATGCCATCGCTC----AGTCTACCGAG---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   275652 15 +   720316 -----------------------GCATTGTAGAAGGAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17300107 25 - 21540570 I

a score=219683.000000
s ce10.chrX              2553781 693 + 17718866  
s cb4.chrX              17300132 693 - 21540570  
i cb4.chrX              I 25 I 1067
s caeRem4.Crem_Contig15   124445 746 -  1794024  
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    149102 734 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3270495 756 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   275667 864 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=91.000000
s ce10.chrX              2554474 1 + 17718866 T
s caeJap4.Scaffold18213   276531 1 +   720316 T
i caeJap4.Scaffold18213 C 0 I 172
e caePb3.Scfld02_0       3271251 0 -  4147112 C
e cb4.chrX              17300825 1067 - 21540570 I
e caeSp111.Scaffold582    149836 0 +   484378 C
e caeRem4.Crem_Contig15   125191 0 -  1794024 C

a score=-5182.000000
s ce10.chrX              2554475 103 + 17718866 G-TTCGATAAGATCAGATAAAAAACCAATTAATTTCCCGGCGA------GGGTTATACATTTATACAATAGAATTTAATTGTTGATAAAATTGTTTTATTGTCATAACAA-------------------
s caeRem4.Crem_Contig15   125191  97 -  1794024 --TAAGATACAATCGAGTGGTAAAATAGTATATGACGTCGTGTGTTGTTGGACTATAAATTT-TGTACTGggattttattgtt----------ttatccTCCAATAACAA-------------------
i caeRem4.Crem_Contig15 C 0 I 122
s caeSp111.Scaffold582    149836 105 +   484378 CTTTAGATACGATCAAATCATAAAATAATATATGACACTGTGC----TTAGTCTATAAATTT-CGCA---------TGATAGT----------TTATAGGGCAATAACATTTATTTAGTATCTCAATCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3271251  34 -  4147112 A-TCAGATACGATCAGATcataaaataataaatga----------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   276532 172 +   720316 I
e cb4.chrX              17300825 1067 - 21540570 I

a score=484.000000
s ce10.chrX              2554578 8 + 17718866 AAGATTTT
s caeSp111.Scaffold582    149941 8 +   484378 AAAATCTT
i caeSp111.Scaffold582  C 0 I 71
e caePb3.Scfld02_0       3271285 0 -  4147112 C
e caeJap4.Scaffold18213   276532 172 +   720316 I
e cb4.chrX              17300825 1067 - 21540570 I
e caeRem4.Crem_Contig15   125288 122 -  1794024 I

a score=-3913.000000
s ce10.chrX              2554586 332 + 17718866 CACAGAGATATACCTAGAAGGTTATATATATATATATGCAATTTAAACCTTAATTTTTGAATTCTCATAAGTTCCTGAGGACTTCAAAATCTTAAAAATAAATTACCGTGGACCCAAACGTAGGCGCGTGTTTCAGTTGAGTTAGGAGTGAATTAGGAACTTTAAAAAAATCAATGTTGTTTTTTAAAACTTCACAGTGTAGAATTCTGATTAATAATAAACTTGCTCTTTTTTCTGAAAA-ATAGTTAGTAACTAGTGATAAAGCATTTTGATTTTAAAACGTCCGTTATGGACCTAGAATTCTCGAAATTTCAAATAGTAAAGAACAATTT
s caePb3.Scfld02_0       3271285 155 -  4147112 cGCAGTATTTGGCCTATAAATTT---TGTATGCGAATATTATTTGA-CGATAATATTTA-----------------------TTCATGATTATAA------------------------------------------------------------------------------------------------TCAGAGACCACAAGTCTGAT--------------CTCTTGATCCAAAAAAGATAGTGAGAGAGTTAACATACAGAAATATGA-------------------GACTTGGAA----------------------Agtactattt
i caePb3.Scfld02_0      C 0 I 53
e caeJap4.Scaffold18213   276532 172 +   720316 I
e cb4.chrX              17300825 1067 - 21540570 I
e caeSp111.Scaffold582    149949  71 +   484378 I
e caeRem4.Crem_Contig15   125288 122 -  1794024 I

a score=0.000000
s ce10.chrX              2554918 126 + 17718866 TCACTCATTTATCTACACTTATCAAACAACTGCTAACATCAATTTTCTTGCATTTGACTTGACTATCACATCAAAACGTGTCATTTGTTGGCCTACCCTGTACAACAAGTTACTCTAATAATTTTG
e caePb3.Scfld02_0       3271440  53 -  4147112 I
e caeJap4.Scaffold18213   276532 172 +   720316 I
e cb4.chrX              17300825 1067 - 21540570 I
e caeSp111.Scaffold582    149949  71 +   484378 I
e caeRem4.Crem_Contig15   125288 122 -  1794024 I

a score=238.000000
s ce10.chrX              2555044 5 + 17718866 CTCCG
s cb4.chrX              17301892 5 - 21540570 cccca
i cb4.chrX              I 1067 C 0
e caePb3.Scfld02_0       3271440 53 -  4147112 I
e caeJap4.Scaffold18213   276532 172 +   720316 I
e caeSp111.Scaffold582    149949 71 +   484378 I
e caeRem4.Crem_Contig15   125288 122 -  1794024 I

a score=145.000000
s ce10.chrX              2555049 2 + 17718866 CT
s cb4.chrX              17301897 2 - 21540570 at
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3271493 2 -  4147112 cT
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold18213   276532 172 +   720316 I
e caeSp111.Scaffold582    149949 71 +   484378 I
e caeRem4.Crem_Contig15   125288 122 -  1794024 I

a score=663526.000000
s ce10.chrX              2555051 1101 + 17718866  
s cb4.chrX              17301899  957 - 21540570  
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig15   125410 1241 -  1794024  
i caeRem4.Crem_Contig15 I 122 C 0
s caeSp111.Scaffold582    150020  968 +   484378  
i caeSp111.Scaffold582  I 71 C 0
s caePb3.Scfld02_0       3271495 1010 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   276704 1085 +   720316  
i caeJap4.Scaffold18213 I 172 C 0

a score=910.000000
s ce10.chrX              2556152 1 + 17718866 A
s caeRem4.Crem_Contig15   126651 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    150988 1 +   484378 A
i caeSp111.Scaffold582  C 0 I 39
s caePb3.Scfld02_0       3272505 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   277789 1 +   720316 A
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17302856 51 - 21540570 I

a score=180.000000
s ce10.chrX              2556153 1 + 17718866 A
s caeRem4.Crem_Contig15   126652 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3272506 1 -  4147112 A
i caePb3.Scfld02_0      C 0 I 66
s caeJap4.Scaffold18213   277790 1 +   720316 G
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17302856 51 - 21540570 I
e caeSp111.Scaffold582    150989 39 +   484378 I

a score=-731.000000
s ce10.chrX              2556154 2 + 17718866 CT
s caeRem4.Crem_Contig15   126653 2 -  1794024 tt
i caeRem4.Crem_Contig15 C 0 I 29
s caeJap4.Scaffold18213   277791 1 +   720316 C-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3272507 66 -  4147112 I
e cb4.chrX              17302856 51 - 21540570 I
e caeSp111.Scaffold582    150989 39 +   484378 I

a score=380.000000
s ce10.chrX              2556156 40 + 17718866 TTTTTTAGACAGATTTTTT-----------AAAAGTAGTATCAGGGCTGTG
s caeJap4.Scaffold18213   277792 45 +   720316 ------AAACATATTGTTTTGAACTGTAGAGAAAGAAATATCGTGTTTTTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3272507 66 -  4147112 I
e cb4.chrX              17302856 51 - 21540570 I
e caeSp111.Scaffold582    150989 39 +   484378 I
e caeRem4.Crem_Contig15   126655 29 -  1794024 I

a score=0.000000
s ce10.chrX              2556196 674 + 17718866  
e caePb3.Scfld02_0       3272507  66 -  4147112 I
e caeJap4.Scaffold18213   277837   0 +   720316 C
e cb4.chrX              17302856  51 - 21540570 I
e caeSp111.Scaffold582    150989  39 +   484378 I
e caeRem4.Crem_Contig15   126655  29 -  1794024 I

a score=91.000000
s ce10.chrX              2556870 1 + 17718866 T
s caeRem4.Crem_Contig15   126684 1 -  1794024 T
i caeRem4.Crem_Contig15 I 29 C 0
e caePb3.Scfld02_0       3272507 66 -  4147112 I
e caeJap4.Scaffold18213   277837 0 +   720316 C
e cb4.chrX              17302856 51 - 21540570 I
e caeSp111.Scaffold582    150989 39 +   484378 I

a score=567.000000
s ce10.chrX              2556871 7 + 17718866 AAAATAA
s cb4.chrX              17302907 7 - 21540570 AATACAT
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig15   126685 7 -  1794024 AATGTAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3272507 66 -  4147112 I
e caeJap4.Scaffold18213   277837 0 +   720316 C
e caeSp111.Scaffold582    150989 39 +   484378 I

a score=360.000000
s ce10.chrX              2556878 2 + 17718866 TT
s cb4.chrX              17302914 2 - 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   126692 2 -  1794024 CC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3272573 2 -  4147112 TT
i caePb3.Scfld02_0      I 66 C 0
e caeJap4.Scaffold18213   277837 0 +   720316 C
e caeSp111.Scaffold582    150989 39 +   484378 I

a score=94549.000000
s ce10.chrX              2556880 131 + 17718866 CAGATTATTCTACTGCGGAGCTCGTGAAGGACAAATGCCAAATGTATTAACCATGGTGAACAAAACCACAAAAACTCCAATCCCAGCCGTAATTCTCACTGTAAGTTTTGCAC----ATT------CTTACT------AGTATTGAA---------
s cb4.chrX              17302916 125 - 21540570 TAGATTGTTCTATTGTGGAGCTCGTGAAGGACAAATGCCGAATGTGCTCACCATGGTGAACAAGCAGACTAAGACTCCAATTCCAGCTGTCATTTTGACtgtgagtttt---t----att------tttatt------tcta---aa---------
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   126694 125 -  1794024 CAGATTATTCTACTGTGGTGCTCGTGAAGGACAAATGCCGAATGTGCTGACAATGGTTAACAAACAGACCAAAACTCCAATTCCAGCTGTCATCCTAACTGTGAGTGTT---T----GCT------TCCAAT------CTCA---AA---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    151028 135 +   484378 CAGACTTTTCTACTGTGGTGCTCGTGAAGGACAAATGCCGAATGTGCTGACAATGGTGAACAAACAAACAAAGACCCCGATTCCAGCTGTTATCTTGACTGTAAGTTGC---CATGGATTAGGGAATTCATT------AGAA---AA---------
i caeSp111.Scaffold582  I 39 I 3
s caePb3.Scfld02_0       3272575 130 -  4147112 CAGACTCTTCTACTGTGGTGCTCGTGAAGGACAAATGCCAAACGTACTCACAATGGTCAATAAACAAACCAAAACTCCAATACCCGCTGTCATCCTCACAGTATGTTTC--------ATT------TTCGTTCATCTAAGCA---TA---------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   277837 134 +   720316 CAGATTGTTCTACTGTGGTGCTCGCGAAGGACAAATGCCGAATGTGCTCACTATGGTAAACAAGCAGACGAAGACTCCAATTCCAGCAGTTATGCTCACAGTgagtttt---t----ttc------ctgaaa------aatg---aaagtttaaaa
i caeJap4.Scaffold18213 C 0 C 0

a score=-4194.000000
s ce10.chrX              2557011 11 + 17718866 GTTTTTTCAAA---
s caeRem4.Crem_Contig15   126819  4 -  1794024 -------TTAA---
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    151166  6 +   484378 -----GTTTAA---
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3272708  6 -  4147112 -----GACTAA---
i caePb3.Scfld02_0      I 3 I 4
s caeJap4.Scaffold18213   277971 11 +   720316 ---acttttaCATA
i caeJap4.Scaffold18213 C 0 I 4
e cb4.chrX              17303041 35 - 21540570 I

a score=326021.000000
s ce10.chrX              2557022 572 + 17718866  
s cb4.chrX              17303076 550 - 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig15   126834 572 -  1794024  
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    151172 563 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3272718 568 -  4147112  
i caePb3.Scfld02_0      I 4 I 5095
s caeJap4.Scaffold18213   277986 565 +   720316  
i caeJap4.Scaffold18213 I 4 C 0

a score=3621.000000
s ce10.chrX              2557594 31 + 17718866 CCCCCCCCCCTCCCCCCAATTTTACAGTATT
s cb4.chrX              17303626 23 - 21540570 --------TCTCCCCtttttttAACAGTATT
i cb4.chrX              C 0 I 3808
s caeRem4.Crem_Contig15   127406 17 -  1794024 --------------CCATGTTGCACAGTATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    151735 17 +   484378 --------------CCAAACTGCACAGTATT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   278551 15 +   720316 ----------------ACACTGCACAGtatt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3273286 5095 -  4147112 I

a score=1092.000000
s ce10.chrX              2557625 2 + 17718866 TT
s caeRem4.Crem_Contig15   127423 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    151752 2 +   484378 TT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   278566 2 +   720316 tt
i caeJap4.Scaffold18213 C 0 I 68640
e caePb3.Scfld02_0       3273286 5095 -  4147112 I
e cb4.chrX              17303649 3808 - 21540570 I

a score=300.000000
s ce10.chrX              2557627 1 + 17718866 G
s caeRem4.Crem_Contig15   127425 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 I 2249
s caeSp111.Scaffold582    151754 1 +   484378 G
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3273286 5095 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I

a score=138.000000
s ce10.chrX              2557628 4 + 17718866 CCGC
s caeSp111.Scaffold582    151755 4 +   484378 CTAC
i caeSp111.Scaffold582  C 0 I 3151
e caePb3.Scfld02_0       3273286 5095 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeRem4.Crem_Contig15   127426 2249 -  1794024 I

a score=0.000000
s ce10.chrX              2557632 405 + 17718866 CGATATAAAAGAATACAATGACAATTCGTACAAGTAGAAATGCGAAAAACCATAATTATTTTGGCATAATAAATATATTCTCACTTCAAACACTTCTACATATTCTGGCTAATAATCGGTTTTCCTGAAAGTTGTTGAATTGCAATTTACAAGGTTTTTACTTATTGTTAGATTTTTTTCCACGGAGTTACAGGTTTTCACAAACAGTAGAATATGTTTAGAACCTAATTTTTAGTTTAAAATCTAAGTTAGATTGTTCTGGAACGTTTTACTTGCTCCAGATGCGGGTGCTCAACGCCTCTTTTTTTCAGACCCCTGGTTAATTAGTTGGAAATTGTTAAAATGGTTTATGTGTCTAAAATTATGTTTTTACATGTGAAAAATAAATTAAAACGTAGTTTTTGG
e caePb3.Scfld02_0       3273286 5095 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeSp111.Scaffold582    151759 3151 +   484378 I
e caeRem4.Crem_Contig15   127426 2249 -  1794024 I

a score=100.000000
s ce10.chrX              2558037 1 + 17718866 C
s caePb3.Scfld02_0       3278381 1 -  4147112 C
i caePb3.Scfld02_0      I 5095 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeSp111.Scaffold582    151759 3151 +   484378 I
e caeRem4.Crem_Contig15   127426 2249 -  1794024 I

a score=2087.000000
s ce10.chrX              2558038 32 + 17718866 TCAGCGGCGACGAATGCGGTCATAGTCACAAT
s caeSp111.Scaffold582    154910 32 +   484378 TCAACGAGAACGAAGACGGCACGCGGCTCCAT
i caeSp111.Scaffold582  I 3151 C 0
s caePb3.Scfld02_0       3278382 32 -  4147112 TCAACGGCCACGGAAACGATCAAACACTCTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeRem4.Crem_Contig15   127426 2249 -  1794024 I

a score=16736.000000
s ce10.chrX              2558070 149 + 17718866 TGTTGTAAATGGACGATTTTTTGTAGAATAACGATG-----CTCCATAGACAAATTGAACAAGAAGCGAATCCCAATCCGAATCTTTTGGAACAATGCATTCAAAATTCATATCAACGGAATAGTAGAATCGATTTGTGTAGTAGGAGCTGAAA
s caeRem4.Crem_Contig15   129675 149 -  1794024 TATTGtagat-----attatttttttcaaatagtatGTAGGCGCCGTGAACGAATTGAACGAAAAGTCGATCCCATTCCGAGTCTTCTGGTACAATTCCACAAAATGTGAAGTCACTGCAGAAGTAGAACCATTTTGTGTAACGTGCCCTAAAA
i caeRem4.Crem_Contig15 I 2249 I 22
s caeSp111.Scaffold582    154942 146 +   484378 TCTTATAGAT---CTCTTCTTTGTCGTAGATCAGAATTC--CACCAAGCAAGTATTGAACAAGAAGAGTGTCCCATTCGGAATCTTCAGGGACGAGACATTGGAAGATGAACGATTTGGTGAAGTAGAACCGATTGGTGTAGTAAGAGCTG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3278414 148 -  4147112 TGTTGTAGATAGAAGATTGCGTGTAATAAATTGAAG-----CGCCATAcaagaattgaacaaaaactgCATCCCATTCTGATTTGCCTGGGGCAGTACAATGAAACTCCGATGTGTAGCAGTAGAAGAATTTCTTGGTGTAGCgggttctgga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I

a score=-892.000000
s ce10.chrX              2558219 28 + 17718866 TTTAAATTTATTGAAAATGAGCAAAAAT
s caeSp111.Scaffold582    155088 11 +   484378 --------------CAATAATGAAA---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3278562 25 -  4147112 ---aaatcattGGTAAattatcaaacat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeRem4.Crem_Contig15   129824 22 -  1794024 I

a score=-5921.000000
s ce10.chrX              2558247 295 + 17718866 ATTttgaaggtggagtagcgaaaattgcctttaaaaatgcctataatgacctaaatctcatacttaaaaattcaaaaaaagtgataaattttatatgagtttttgaaattcggaaaaaactcCGTTTTCCACTTTTTTAAAGCCGTCGATTTGAAAAAAATACCGTTTTTATTATCTACTTACGTGTGTTTCAAAAATTATCAGGGAATCGAACATACGATAGTGCTCTAGTTTtttcaaaaagtggcaaaaactcaataattgccactttttgaaaaaatccaatatttttcga
s caeSp111.Scaffold582    155099  63 +   484378 ----------------------------------------------------------------tagaaactgataaaaa------------------------------tagaaaaaact--------cactcctTAA------------TGAATACAACA--GTCTTGAT---------------------------------------------------------------------------------CTCAACA-----------------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3278587   0 -  4147112 C
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeRem4.Crem_Contig15   129824  22 -  1794024 I

a score=0.000000
s ce10.chrX              2558542 4 + 17718866 aaag
e caePb3.Scfld02_0       3278587 0 -  4147112 C
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeSp111.Scaffold582    155162 0 +   484378 C
e caeRem4.Crem_Contig15   129824 22 -  1794024 I

a score=-2378.000000
s ce10.chrX              2558546  9 + 17718866 tttcactAA------
s caeRem4.Crem_Contig15   129846  9 -  1794024 -CCCACCGAA-----
i caeRem4.Crem_Contig15 I 22 C 0
s caePb3.Scfld02_0       3278587 10 -  4147112 -----tttcattctc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17303649 3808 - 21540570 I
e caeSp111.Scaffold582    155162  0 +   484378 C

a score=3594.000000
s ce10.chrX              2558555 265 + 17718866 AAACTCACTTGTTCAGAAACATGAC--TGTGTGGAATCCTGCACTGCTTTCGAATTTCAGCG---ATCTGTCTTTCTCATCATACA-CAAATGTTGCAACTGGTGGATCTGGGAGCACTTGACCAATAAGGGTTTCAGAAACAATTCGAGCAGAGTGATCATCTAACAAAATGGCCAAGTCAATACGATTTT---CTTCATTGAACAACTGGATGACTCCGGACATGATTCCAACATCAGAATGGAAAGCTCCAAACTGGG-----AAAGTTTTC--ATTT-
s cb4.chrX              17307457 262 - 21540570 AGACTTACTGGCTAAGGACCACAATCGTGTGAATGGAGTAGTTT---GTCCAAAGATC--CA---ATTTGTTGTCCT--TCATCGT-G-CAGACGACTTCTGGTGGGATTGCAGTAATCTTGTTGGACAACGATTCCGACAGAATCCTAGCTGAAATGTCGTCCAGAAGGTCAACTAGACGGAGtgtgttgttgttgttgttgaagagGGTGATCACTCCAGACATGATTCCAGTGTCAGCATGATAGGCTCCGAGCtgca-----aaatttttc--gttt-
i cb4.chrX              I 3808 I 581
s caeRem4.Crem_Contig15   129855 272 -  1794024 TAACTCACTCTTTGAGAAAGACAAC--TGTGAAGAGTCCAACTTCGCCTCCATTGATCGTCAAACATCTAGTCTCCTTATTAAAGT-GATAGTCGGCGACCGGCGGTGTAGCAAGAATATTTGCGCTTAACATCTCCGAAACGATTCTTGTAGTGATATCATCTACTCGATTTACCAGGCAGA----TTTGT--CCATTTTCGATCAGGTCGACATATCCAGACATGATGCCATCGTGATGGTGATACGCTCCAAGCTAAACGTTTATATTTTGCTAGTTT-
i caeRem4.Crem_Contig15 C 0 I 18
s caeSp111.Scaffold582    155162 224 +   484378 ----TCACT--------------------AGA-GATTCGGATGGTTCTT------------------TTGTTCTT---ATCAAACT-CATAATCACCAAATGGAGGATCAATG---ATTTGAGAATACAACGATTCCGAGACGATTCTCGACGAGATCTGGTCCAATTCGTTAACCAATTTGAACTCGTTGT---TCTCATTGAACATCTTGATCACTCCTGACATTATTCCGGATTTGTCGTGATAAGCGccaaactgaaa--agaaaaggttt--cATT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3278597 274 -  4147112 caactcactgtttcaggaaCACAAC--CAAGACAATTTCAATGTCGCTTGACAAGTACAGTG---AATTACTCTCCCGATCGAACGACATTATGA-CACTTGGAGACTTGTTGAATATTTCATCGAGCAATGTTTCTGACACTATTTTTGCAGTGATATCATCCAGAGCATTGATCAACTGGAACCCGTTGTCGCTTCGATCAAACAATTGGATCACACCCGACATGATGCCTGAATCCGAGTGGAATGCACCAAACTGAAATGCGAAATGTGTT--AATTT
i caePb3.Scfld02_0      C 0 I 341
e caeJap4.Scaffold18213   278568 68640 +   720316 I

a score=-5195.000000
s ce10.chrX              2558820 28 + 17718866 ------------AAACCA----------------A----------ATGATCAGAATAGTAAGATTT----------------
s caeRem4.Crem_Contig15   130145 37 -  1794024 ----aagt----aaaact----------------ATTCTGACT--ATTA-CAGACTAGCTagaa------------------
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    155386 81 +   484378 GGCTATGTGCTCAAAACGTCATTCTCCTATTCAAATCCTGAATTCATAA-CAAAAAACCAGGAGGTTTTAACGTgtattttt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3278871 341 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17307719 581 - 21540570 I

a score=-1162.000000
s ce10.chrX              2558848 2 + 17718866 GA-
s cb4.chrX              17308300 2 - 21540570 GA-
i cb4.chrX              I 581 C 0
s caeRem4.Crem_Contig15   130182 2 -  1794024 ag-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    155467 2 +   484378 -ac
i caeSp111.Scaffold582  C 0 I 2
e caePb3.Scfld02_0       3278871 341 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I

a score=17448.000000
s ce10.chrX              2558850 148 + 17718866 AAAA------ACTCACCATATGCATCATCTCATGAAGAAAATGATTAAGAAGCATTTCAAACGCTGCTTTTTC----GTTAGC-TGGTAGCTTATCGATATTTGTCT----CTTCGGAAAGTTCGTCAATTTTGCTCTTCGGAATGTGGATCTCAGCTCGATT
s cb4.chrX              17308302 148 - 21540570 AAAA------TCTTACCATGTGAAAAAACTCGTGGAAGAAGTGATTCAAAAACCACTCGTATTTATCCCTCGC----ATACTC-CGACATATTCGCAACAACCATCT----CATCCGGTAGAATGGCTAGTTCCGATAttggaattcgaatttgtGCACGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   130184 148 -  1794024 aaaa------acttacaatgTGCAAGACTTCGTGAATGATATGGTTTGCAAACCATCCAAACAATTCTCTGTC----TGAATC-AGA-ATATTCGTGAAGAGATTGTA---CAACCGGTAGTTGATCGATTTTGTGTTTTGGCACATGCAATTCAGCTTTATT
i caeRem4.Crem_Contig15 C 0 I 896
s caeSp111.Scaffold582    155471 163 +   484378 aaaccAATCGACTTACCATGTGCAGGATTTcgtgaagaaaatgattcaataaaaactcgTAGACatctttctcgtttttcttcaagtcAGATACTTCAAGATTTGGTAAGTTATCCGGCAGCTTGTCCATCGTTTTCTgtggaatatggaattcgCAACGAAG
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3279212 151 -  4147112 AAAC------ACTCACCATATGTAAAACTTCGTGGAGAAAGTGGTTTAGCAACAGTTGGTAAGCAACTTTCCC----TTCTTC-GGACAGA-ATCTCGAAATTATGAAGATCTTCTGGAAGTTTATCCATAGTCATCTGTGGAACATGAATCTCAGCTCGGTA
i caePb3.Scfld02_0      I 341 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I

a score=-17337.000000
s ce10.chrX              2558998 578 + 17718866  
s cb4.chrX              17308450 530 - 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    155634 611 +   484378  
i caeSp111.Scaffold582  C 0 I 10519
s caePb3.Scfld02_0       3279363 546 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=1815.000000
s ce10.chrX              2559576 9 + 17718866 CTAAATGTG
s cb4.chrX              17308980 9 - 21540570 CCGAATGTG
i cb4.chrX              C 0 I 2217
s caePb3.Scfld02_0       3279909 9 -  4147112 CCAGATGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e caeSp111.Scaffold582    156245 10519 +   484378 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=-1016.000000
s ce10.chrX              2559585 354 + 17718866 GGTCA--GTAACACTT-GCGCGTCGGCAGAGAGGGTGGAGGTCCCGATTGTGTGCAGACACGCAGTTATAAAACAAAATGGGGAAAAAAAGTGAAATAACAGTTCaaaaaaaaacttttaaaaaaatttgttt---ttaaatttattCTGCATGGTAATGTATTTAGTTAAATTAATTGATTTGTAAACTTATGAAAATGAAGACCAACAAAAATTGTACGCCGTTTCTGAAAATTGAGCCTGTAAAATGA-TAAAATTTAAGCAGTACAATGAAGT---AATTGAGATGAGAAAA---ACAATCGAGCAATGACTATCAATTCAAAAAAGTGAACTGCGAACAATGTAGAAGTGATTAAGCCTCAT
s caePb3.Scfld02_0       3279918 292 -  4147112 CGTCAATGTATCAAGAAGCGCGTCAACTAA--------------CGATTT--------------ATTAAGGAACGGACTGcgcaaggaaa-------------------------------aaaattctgtttagCTTAACCTATATCTGC--TGTAAcgta-------aaatt-------tggaaaagttacGGAATTTTAGATGAATAATACGATTAAAACAGTTTTGTggaccaaaatttcaaaagaaatgaagagtaaaaggtaaaatagaatgaaaaatgagaaaaggaaataaaaaaccaaaaaaaaaaaatcattttaacaCTGGACCtttcgagagaaaatgaaggggTTGTTTCCCAT
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17308989 2217 - 21540570 I
e caeSp111.Scaffold582    156245 10519 +   484378 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=0.000000
s ce10.chrX              2559939 29 + 17718866 TGATATTGTGCAAAAATCACCAAATAGCA
e caePb3.Scfld02_0       3280210 12 -  4147112 I
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17308989 2217 - 21540570 I
e caeSp111.Scaffold582    156245 10519 +   484378 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=-478.000000
s ce10.chrX              2559968 137 + 17718866 GAATAAAAGTTTTGGAAAATTTTTCATGTCTTATCAAAACGTGaaaccttttaaacttttttaaaaatgatatttggtcatttta----acatc-------ataggattaatttttaatcatttctcgcatagtccacctttaaATAA
s caePb3.Scfld02_0       3280222 136 -  4147112 GAATGCAGACGATGAAAGATTCTTGTTG------CACAGCAAAAAGCATTTATTACAGAATTAAGCCGGATGCCGGAAATTTTTAGGATACATCTAGATGAATCGGTCTAATTACAAACAATCGAT-GCATATTTCA-----AGAAGA
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e cb4.chrX              17308989 2217 - 21540570 I
e caeSp111.Scaffold582    156245 10519 +   484378 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=-869.000000
s ce10.chrX              2560105 4 + 17718866 AAAA-
s cb4.chrX              17311206 4 - 21540570 -AAAA
i cb4.chrX              I 2217 C 0
s caePb3.Scfld02_0       3280358 4 -  4147112 CACG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e caeSp111.Scaffold582    156245 10519 +   484378 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=546.000000
s ce10.chrX              2560109 1 + 17718866 T
s cb4.chrX              17311210 1 - 21540570 T
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold582    166764 1 +   484378 t
i caeSp111.Scaffold582  I 10519 C 0
s caePb3.Scfld02_0       3280362 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I
e caeRem4.Crem_Contig15   130332 896 -  1794024 I

a score=2115.000000
s ce10.chrX              2560110 5 + 17718866 TTTAA
s cb4.chrX              17311213 5 - 21540570 ATCAA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   131228 5 -  1794024 TTTAA
i caeRem4.Crem_Contig15 I 896 C 0
s caeSp111.Scaffold582    166765 5 +   484378 ttcaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3280363 5 -  4147112 TTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   278568 68640 +   720316 I

a score=483474.000000
s ce10.chrX              2560115 798 + 17718866  
s cb4.chrX              17311218 892 - 21540570  
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig15   131233 813 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    166770 806 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3280368 818 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   347208 817 +   720316  
i caeJap4.Scaffold18213 I 68640 C 0

a score=910.000000
s ce10.chrX              2560913 1 + 17718866 A
s caeRem4.Crem_Contig15   132046 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 I 92
s caeSp111.Scaffold582    167576 1 +   484378 A
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3281186 1 -  4147112 a
i caePb3.Scfld02_0      C 0 I 145
s caeJap4.Scaffold18213   348025 1 +   720316 A
i caeJap4.Scaffold18213 C 0 I 72
e cb4.chrX              17312110 36 - 21540570 I

a score=342.000000
s ce10.chrX              2560914 78 + 17718866 TTTATTGTGAAAGTTTGAAAATATTTGGGGTGAGAATGCGTCTTATtgcatatagatttttttttgaaattgcggaaa
s caeSp111.Scaffold582    167580 69 +   484378 TTGCATATGAG----TGAA-----CGGGAGTTCGATTTCTGTTTAGTGTTTACAGATAATACTCGGAAACACcggaaa
i caeSp111.Scaffold582  I 3 I 109
e caePb3.Scfld02_0       3281187 145 -  4147112 I
e caeJap4.Scaffold18213   348026 72 +   720316 I
e cb4.chrX              17312110 36 - 21540570 I
e caeRem4.Crem_Contig15   132047 92 -  1794024 I

a score=0.000000
s ce10.chrX              2560992 978 + 17718866  
e caePb3.Scfld02_0       3281187 145 -  4147112 I
e caeJap4.Scaffold18213   348026  72 +   720316 I
e cb4.chrX              17312110  36 - 21540570 I
e caeSp111.Scaffold582    167649 109 +   484378 I
e caeRem4.Crem_Contig15   132047  92 -  1794024 I

a score=298.000000
s ce10.chrX              2561970 27 + 17718866 TTGCCGCCGCTAATAAAAATAAAAAAT
s caeRem4.Crem_Contig15   132139 27 -  1794024 TTGGCTTCCTCAATCAAATATATAAGT
i caeRem4.Crem_Contig15 I 92 C 0
e caePb3.Scfld02_0       3281187 145 -  4147112 I
e caeJap4.Scaffold18213   348026 72 +   720316 I
e cb4.chrX              17312110 36 - 21540570 I
e caeSp111.Scaffold582    167649 109 +   484378 I

a score=38.000000
s ce10.chrX              2561997 1 + 17718866 G
s caeRem4.Crem_Contig15   132166 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3281332 1 -  4147112 G
i caePb3.Scfld02_0      I 145 C 0
e caeJap4.Scaffold18213   348026 72 +   720316 I
e cb4.chrX              17312110 36 - 21540570 I
e caeSp111.Scaffold582    167649 109 +   484378 I

a score=1386.000000
s ce10.chrX              2561998 3 + 17718866 TAT
s caeRem4.Crem_Contig15   132167 3 -  1794024 CAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    167758 3 +   484378 TAA
i caeSp111.Scaffold582  I 109 C 0
s caePb3.Scfld02_0       3281333 3 -  4147112 TAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   348098 3 +   720316 TAA
i caeJap4.Scaffold18213 I 72 C 0
e cb4.chrX              17312110 36 - 21540570 I

a score=206225.000000
s ce10.chrX              2562001 291 + 17718866 CTTACTCTCCAAGCATTATACATCCTTTTTCTTTGTTGAACATCAGTGCTTCTACGAAATCGACATTCTCCGAGTT------TCTATCACTATCCTCGGTTAGCTGCTCGCACATTTCACTCAAAGTCTCAGTCTTCTTGTACGTGAGTTTTACATATTTCTTGCAGGGAATGATTTTAATCGTTGCGGCCACCAAGAAGCAAATGGTTCCTTGACTCCAGGGAATTGCAAAGAACAAAGAATTATCCTGTTTCGCCTGCTCCGTCTTTGCCGCCTGCAATTTTAATCAACTGAAGA
s cb4.chrX              17312146 291 - 21540570 CTAACTCTCCCAACATAATACATCCCTTGTTCTTGTCAAACTGCAAAGCCTCCACAAAATCGACATTATCTGCGAA------TCTGTCACTGTCCGTTGTTAGCGATTGGCACATCTCGTTCAACGTCGACGTTTTCTTATAAGTAAGCTTCACGTACTTCTTGCATGGAATGATTTTTATGGTTGCTGCTGTCAAGAAACAGATAGTTCCCTGACTCCATGGGATTGCATAGAACAACGAGTTTCCCTCCTTTGTTTCCTTTGTTTTAGCGCCCTGGAATTCGAAAACACTGGTGA
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig15   132170 291 -  1794024 CTCACTCTCCAAGCATAATACATCCTTTGTCCTTTGTGAACAAAAGTGCCTCCACGAAATCTACTTTGTCGGAATA------TCTATCACTGTCTTCTGTCAATTGCTCGCACATTTCATCCAAAGTCTCAGTTTTCTTGTATGTCAATTTCACGTATTTCTTGCATGGAATGATTCTCATGGTAGCAGCCGTTAAGAAGCAGATGGTTCCTTGACTCCAGGGAATTGCAAAAAAGAGTGAATTGTCCTGTTTTGCCTGCTCCGTTTTAGCGGCCTGCAATTTTAATCAACTGAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    167761 291 +   484378 CTCACTCTCCAAGCATTATGCATCCTTTGTTTTTATCGAACAGAAGTGCTTCCACaaaatccactttttcaGAGTA------TTTATTGCTGTCTTCGGTCAACGTTGAGCACATTTCTTCAAGAGTTTTTGTCGATTTATAGGTTAGTTTCACGTATTTCTTGCACGGAATGATTTTGATAGTAGCGGCCACCAAAAAGCAAATAGTTCCTTGACTCCAGGGAATAGCGTAGTACAAAGAAGTGTCTTGTTTCGCTTTCACCGTCTTAGCAGCCTGCAGTTTTAATCAACTGAAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3281336 297 -  4147112 CTCACTCTCCGAGCATTATGCATCCTTTGTCCTTGGTGAACAAAAGTGCCTCGATGAAATCCACATCATCGaaagaactattttttttgctgtcttCTGTTAGAACATCGCACATTTCTTCGAGtgtgttcgtttttttgtattgtaaCTTGACATATTTCTTGCAAGGAATGATTTTCATAGTAGCTGCAGTCAAGAAGACTAGTGTTCCTTGACTCCACGGGATTGCCCAGAAGAGAGAGTTTGCTTCCTtagattttttagttttagcAGTCTGCAATTTCAATCAACTGAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   348101 291 +   720316 CTCACTGTCCGCGCATAATGCATCCTTTTTGCTTGTTGAACATTAGGGCCTCCACAAAATCAACTTTTTCGTCACT------TTTATCACTGTACTCTGTGAGTTTAGTGCACATTTCCGGCAGAGTGGACGTCTTCAAGTACTCTAGTTTGACGTATGGCTTGCAAGGAATTATCTTGATTGTGGCCGCCGTCAAGAAGCAAATAGTTCCTTGGCTCCATGGAATTGCGTAGAAAAGAGATTGGTTCCTCTTGGCTTGCTCAGTTTTTGCGGCctgcaattttaattttctaaaga
i caeJap4.Scaffold18213 C 0 I 1672

a score=-731.000000
s ce10.chrX              2562292 43 + 17718866 AGGCCTTCCAGGATTTGCCGGACATTGAAACTACTAGAAATCA-----------------------
s cb4.chrX              17312437 33 - 21540570 AGGTCTTCCCATACATTTTAACCCCTGAAATCA---------------------------------
i cb4.chrX              C 0 I 1267
s caeRem4.Crem_Contig15   132461 37 -  1794024 AGGTCTTCCAGGATTCACTGGATGTTCAAAGCACTAT-----------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168052 59 +   484378 AGGTTTTCCAGGATTCATTGGATGTTTTAAA------CAAACTAAAAGTTAGA-TATACTAGAACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3281633 66 -  4147112 AGGTCTTCTGGGATTTACTGGATGTCTTGAGTACTACTAAAGTAAGCGTTAGAGTGAAGCACATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   348392 1672 +   720316 I

a score=-5754.000000
s ce10.chrX              2562335 103 + 17718866 --------ACTACAAT-------CACTAGCACTTCTGAACAAATGTAAGTTTGGAACTTTTCAAAAAATCAAATAGAATATTAGAGAAACTCA-----ACAAATCAGTTACAACAAGAAGAAA--
s caeRem4.Crem_Contig15   132498  94 -  1794024 CAAGCATTAGTTCACTTCGAAAACACTGACA---------AAAGGTGAGTTTTAACC-------AAAATtagataaga--------aaaatga-----aaacttaagaattaatttgaaaaaa--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168111  61 +   484378 --------ACTACATT-------CGTTGACA---------AAATGTGAGTTTC---------------------------------AAAGCAA-----ACAAGACCATATTA--TAGAACCAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3281699  66 -  4147112 --------AACACACT-------GACTGACA---------AAAAGTGAATTCT---------------------------------CAAACCACTGTTATATTTTAGTATTA--TTGGTCCAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   348392 1672 +   720316 I
e cb4.chrX              17312470 1267 - 21540570 I

a score=18701.000000
s ce10.chrX              2562438 42 + 17718866 AAAAAACATCCGACAAATCCCAGAAG------ACCTTCACGCTCAAAA
s cb4.chrX              17313737 42 - 21540570 AAACAACATCCAGCAAATCCCAGAAG------ACCTTCACATCCAAAA
i cb4.chrX              I 1267 I 28
s caeRem4.Crem_Contig15   132592 42 -  1794024 aaacaacatccAGTAAATCCTAGAAG------ACCTTCACAATCAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168172 45 +   484378 TAAAAACATCCAATGAACCCTAGAAAGCTgttatattcaa---taaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3281765 41 -  4147112 CTAAAACATCCAGTAAGTCCCAGAAg------atcttcaaa-tcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   348392 1672 +   720316 I

a score=51.000000
s ce10.chrX              2562480 18 + 17718866 CATCAATATTGCTCTTCG
s caeRem4.Crem_Contig15   132634 18 -  1794024 CACAAATTCAACTGATTG
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    168217 18 +   484378 cacGTATTCAACTCGTAA
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3281806 18 -  4147112 tacGTGGAGTACCGGTGG
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18213   348392 1672 +   720316 I
e cb4.chrX              17313779 28 - 21540570 I

a score=259.000000
s ce10.chrX              2562498 2 + 17718866 TT
s cb4.chrX              17313807 2 - 21540570 TC
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   132656 2 -  1794024 TC
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    168239 2 +   484378 AT
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3281828 2 -  4147112 TC
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18213   348392 1672 +   720316 I

a score=194420.000000
s ce10.chrX              2562500 257 + 17718866 ACGTACAGAGTCCGGATACACGTTCTTGAGTTCACCATCTGACATAACTACTTCGTATCCAGTACAGATATGCTGGAACATTCCATATTTGAAAGAGCCCGACTCAACTCCACATCCATTGATAAGCCCTCCAACAGTTAGATCATCGAGTTCCGGAAGTACTGGTAGTGTATAACCACGAGAAATCAAATATTGAGACAGTTGACCCATAGTTACTCCTGGCTCCGCTTTCACTGTCATCTTCTCTACATCAAGCT
s cb4.chrX              17313809 257 - 21540570 ACGTACCGGATCTGGTCCAACAGTTCTGAGTTCTCCGCTGGACATAACAACTTCAAATTGTTCGCAGATGTGCTGGAACATTCCGTGTCGGAAGGAGCCAGATTCTACTCCACATCCATTAATGAGTCCTCCGATTGTCAGATCATCGAGTTCTGGGAGTACTGGAAGAGTGTATCCACGTGGAATCAGATAACGAGAAATCTGTCCCATTGTTACTCCTGGCTCAACCTTGATGGTCATCCTTTCTACGTCGAGct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   132658 257 -  1794024 ACGTACAGAATCTGGGTAGATATTTCTGAGTTCTCCGTCTGACATTAGGACTTCATAACCAGTACAAATGTGTTGGAACATTCCATATTTGAATGATCCAGATTCAACTCCGCATCCATTAATGAGTCCTCCAACAGTGAGATCATCTAGTTCCGGTAAGACTGGGAGCGTGTATCCAAGTGGAATGAGGTAACGGGAGAGTTGTCCCATTGTAACACCCGGTTCCGCTTTCACAGTCATTTTCTCTACAtcgagct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168241 257 +   484378 ACATACAGAATCAGGTACCACATAGTTCAGCTCTCCATTTGACATAACCACTTCATATCCAGTGCAAATATGTTGGAACATTCCATATTTGAATGATCCTGACTCAACTCCACAACCATTGATAAGCCCTCCAACAGTGAGATCATCAAGTTCTGGAAGTACTGGGAGAGTATAGCCAAGTGGAATCAAGTAACGAGATATTTGTCCCATTGTCACTCCCGGTTCGACTTTCACTGTCATTGTTTCGGTGTCCAGCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3281830 257 -  4147112 ACATACAGGATCCGGGAACACTTGTAGTAATTCGGCATCCGAAGTGACGACTTCATATTGAGTGCAAATATGTTGGAACATTCCATGCTTGAATGATCCAGACTCCACACCACATCCATTGATTAATCCGCCAACAGTCAGATCGTCCAACTCAGGTAACACTGGTAGAGTGTATCCCAGAGGAATCAAGTAACGAGAGATTTGTCCCATTGTCACTCCAGGCTCTGCTTTGATGGTCATTTTTTCGAGGTCGAGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   350064 257 +   720316 ACTCACCGGGTCTGGACAAACCACATCTATTTCGCCAGTTGCAAACACAACTTCAAACGAGACGCAAATGTGTTGGAACATTCCGTATTTAAATGATCCAGACTCGACTCCGCATCCATTTATAAGCCCTCCGATGGTTAAATCGTCGAGCTCCGGTAGTACTGGTAGGGTGTATCCAAGTGGGATGAGGTAACGGGATATGCTTCCCATAGTGACTCCGGGTTCCACTGTCACAGTTTGCTTTTCGTAGTCAATCT
i caeJap4.Scaffold18213 I 1672 I 350

a score=3061.000000
s ce10.chrX              2562757 5 + 17718866 GGAAA
s cb4.chrX              17314066 5 - 21540570 ggaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   132915 5 -  1794024 gaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168498 5 +   484378 GAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3282087 5 -  4147112 TAAAA
i caePb3.Scfld02_0      C 0 I 197
e caeJap4.Scaffold18213   350321 350 +   720316 I

a score=1092.000000
s ce10.chrX              2562762 2 + 17718866 AA
s cb4.chrX              17314071 2 - 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   132920 2 -  1794024 aa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168503 2 +   484378 AA
i caeSp111.Scaffold582  C 0 I 121
e caePb3.Scfld02_0       3282092 197 -  4147112 I
e caeJap4.Scaffold18213   350321 350 +   720316 I

a score=273.000000
s ce10.chrX              2562764 1 + 17718866 A
s cb4.chrX              17314073 1 - 21540570 a
i cb4.chrX              C 0 I 477
s caeRem4.Crem_Contig15   132922 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 140
e caePb3.Scfld02_0       3282092 197 -  4147112 I
e caeJap4.Scaffold18213   350321 350 +   720316 I
e caeSp111.Scaffold582    168505 121 +   484378 I

a score=0.000000
s ce10.chrX              2562765 945 + 17718866  
e caePb3.Scfld02_0       3282092 197 -  4147112 I
e caeJap4.Scaffold18213   350321 350 +   720316 I
e cb4.chrX              17314074 477 - 21540570 I
e caeSp111.Scaffold582    168505 121 +   484378 I
e caeRem4.Crem_Contig15   132923 140 -  1794024 I

a score=414.000000
s ce10.chrX              2563710 15 + 17718866 TTGATGTTGATTTTT
s cb4.chrX              17314551 15 - 21540570 ttgataaagcTTTAT
i cb4.chrX              I 477 I 3
e caePb3.Scfld02_0       3282092 197 -  4147112 I
e caeJap4.Scaffold18213   350321 350 +   720316 I
e caeSp111.Scaffold582    168505 121 +   484378 I
e caeRem4.Crem_Contig15   132923 140 -  1794024 I

a score=1023.000000
s ce10.chrX              2563725 3 + 17718866 AAA
s cb4.chrX              17314569 3 - 21540570 CAA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   133063 3 -  1794024 AAA
i caeRem4.Crem_Contig15 I 140 C 0
s caeJap4.Scaffold18213   350671 3 +   720316 AAA
i caeJap4.Scaffold18213 I 350 C 0
e caePb3.Scfld02_0       3282092 197 -  4147112 I
e caeSp111.Scaffold582    168505 121 +   484378 I

a score=2820.000000
s ce10.chrX              2563728 3 + 17718866 AAC
s cb4.chrX              17314572 3 - 21540570 AAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   133066 3 -  1794024 AAC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3282289 3 -  4147112 AAC
i caePb3.Scfld02_0      I 197 C 0
s caeJap4.Scaffold18213   350674 3 +   720316 AAC
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    168505 121 +   484378 I

a score=119993.000000
s ce10.chrX              2563731 150 + 17718866 TTACATCGAGAATATCAAACAGCTTGTCTGTCGCGATTTTTGTCGCATTTTCCTTATAAAGAGGAAACCTGAAACTCATTGTAAGCCATCCTGGTCGAGCATTTACTAACTTGCTCTTTCGCCCGTTATCGTTCCATTCTTTCAGCT-----GAA
s cb4.chrX              17314575 150 - 21540570 ATACCtccaaaatatcaaaaagcttATCAGTGGCAATTTTCGTCGCATTTTCCTTGTACAGTGGGAATCTGAAACTCATTGTGAGCCATCCTGGACGAGCGTTTACCAATTTTGTCTTCCTTCCATTCTCATTCCATTCTTTGAGct-----ata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   133069 155 -  1794024 ACACCTcgagaatatcaaaaagcttATCAGTTGCAATTTTTGTGGCGTTCTCCTTGTACAGTGGGAATCTGAAACTCATCGTAAGCCATCCTGGACGAGCGTTCACCAATTTTGTCTTTCGTCCATTGCTGTTCCATTCTTTTAGCTGACACATC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168626 150 +   484378 TTACCTCAAGAATATCGAACAATTTATCTGTTGCGATCTTTGTAGCATTCTCCTTGTAGAGTGGGAATCTGAAGCTCATCGTGAGCCATCCGGGTCTCGCATTAactaattttgttttccttcCGTTCGCGCTCCATTCTTTCAGCT-----GAG
i caeSp111.Scaffold582  I 121 C 0
s caePb3.Scfld02_0       3282292 150 -  4147112 TCACCTCTAAAATATCGAACAGTCTATCTGTTGCAATTTTCGTTGCGTCTGTCTTGTACAACGGATATCTGAAGCTCATTGTGAGCCATCCTGGACGTGCATTGACCAGCTTTGTTCGTCTTCCATCAgcgttccaattttttatct-----gaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   350677 150 +   720316 TCACAGAGAGAACATCAAACAGATTGTCAGTCGAAATCAAAGTGCAATTTTCCTTGTAGATTGGAAACCTGAAACTCATTGTGCGCCATCCCGGCCGAGCATTCACCAATTTTGTCTTCCTTCCCTTGTCGTTCCATACTTTCaact-----gaa
i caeJap4.Scaffold18213 C 0 I 1079

a score=-13680.000000
s ce10.chrX              2563881 39 + 17718866 TAGGCAAATAAGTGATGTTTA-------AAAGTAAAATATCAACTA
s cb4.chrX              17314725 38 - 21540570 aa---aattaaataatttctgattttccagagAA-TGTAT----TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   133224 37 -  1794024 AA---ACTT--ATCAATTCTACCTCTTTAAACAAGCAAAC----AT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168776 41 +   484378 TAATCATTTCgattaattttcattttacttATCACCAGAT-----T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3282442 37 -  4147112 aa---actttgtttgtATTTCTTTGGCGCTAATAAAACA------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   350827 1079 +   720316 I

a score=116145.000000
s ce10.chrX              2563920 386 + 17718866 ACTTGTTCCTGAATGTGCTTAACTTTTCTAACGTGTGCGTTTGGCGCAGAGTTGACCGCATGAACGATACGATTCCGAAAATCAAAAACCGTGTTGAAGAGGAAGGACAAAGGGAGCAGGAACGGAACCACAAAAACCCATCGAAAATGGAACATTATAAATTCTACACATTTTTCCCATCGCGTTGGC------TTCTCATCTTTCTCATCAACGAGATTCATTTCTGTAAATTTA-----------AAATGTTTCGATAAATGTTCATTTGAAAAAAAA--ACAA-------------GAAAAA-AATAGAAATAGCAAGCATAGAAAATTCACACATTTG-------------------------TTTTTTTTT------ATAGGGAAGCTCT-------------------TGGTGTTCGTTT------TTG-TTACT-CATCCCACTTTTCTCACCACTATGTATAATCAAT
s cb4.chrX              17314763 401 - 21540570 ACCTGCTCCTGAATGTAGTTGACTTTTCTCACATGAGCGTTTGGCGCCGAGTTGACCAAATGAATCAGCCGATTCCTGATATCGAAGACAGTATTGAAGAGGAACGATAGTGGAAGCAGGAATGGGACAACAAAGAGCCATCGGAAGCGGAACATGATGAATTCTACAATATTCTCCCATCTCGTCGGCGGCACGTCTTCCTCGTCTTTCTcaata---ttcata---------------------------ttttctgtAAATATGTAATTAGAGAAAGA--GGAatgtaaatattttttcgaaattataagaaaagaaaaaa------------atgattgaaggATAGGATTCAAATTGTTATTGTATATATTTTCTGGTATAAAGAAGCtct---------------------atatttttccaaaacattaGTCACT-CTTTCTAGCTATC----------CTATAATCAAT
i cb4.chrX              C 0 I 302
s caeRem4.Crem_Contig15   133261 387 -  1794024 ACCTGTTCTTGAATGAAACCAACTTTCCTGACGTGTGCATTTGGTGCTGAATTGACAGCATGGATTATTTTGTTGCGAATTTCGAAGAGCGTGTTgaagaggaaagaaagtgGTAGAAGAAACGGAACAACAAAAACCCATCGGAAGTGGAACATTATGAATTCCACAAATTTCTCCCATCTTGTCGGT------TTTTCATCGTCCTCATCAATAAGGTTCATGGCTGCaa----------------aatcctttttttaattgtgCTTTTTGAGTGAGAACGGAA---GAATAAtttgaagaga-aatgaaaaaaaaaacca------------atgttTG---------------------------------TTATGGTATAGTTAAGCTCT--------------GAATAAGatattcttttcaattatta-tCAC--CTGTTCAGTTATCT--CTAATAACTATAATCAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    168817 378 +   484378 ACCTGTTCTTGAATATATTTGACTTTTCTGACGTGTGCATTCGGTGCTGaactaacaaaatgaacaattCTGTTCCTAACTTCAAAAGCAATATTGAAGATGAATGAgagtggaagaagaattggaacAACTACGACCCATCGAAAATGGAACATtataaattccaaaaatctttcGCATAGTATTGGT------CTCTCGTCtgcttcctc------ttccatttctgaaatttt------------aatcttttttgacataatcaaattaaaagcaaa--aaga-------------aaggca-aacgaagagaaa-----------------acgCTTG-------------------------TTTACTTtagttggaa-aaagaagctcT-------------AGAATTATGTGTTCTTTCCAGAAGTCA-TTATTAATTCTCAGTTATCT--TCCATATCTATAATCAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3282479 398 -  4147112 ACCTGCTCTTGAATGTAGTTCACTTTTCTCACATGAGCATTCGGAGCAGAGTTGATCCAATAAATCAACTTGTTTCTGATTTCGAAGAACACGTTGAACAAGAATGATAACGGGAGGAGGATTGGAACCACAACAACCCAGCGGAAGTGGAACACCATAAACTCCAAAAACCTCTGACTCCGACTTGGC------CGTTCATCGGCCTCCAAACCGGGATCCATGTctgcaatttttcat------gaaatctttTATTCcgaagtt---ttccaaaaaaa--ggaa-------------caggaa-aacgagaaaaaaggaaataaag-------aCGCTTG-------------------------TTTATTTCTGCTGAAATGGTGAAGCTCT-------------AAAATTACATATTCTCCACAATAGTTA-TCATCTTTGGTTAGTCATTC--CCTATATCTATAATCAAt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   351906 395 +   720316 ACCTCATCTTGAATTTGTCTAACTTTTCTCTTGTGAGCGTTTGGCGCCGAATTGACAGCATGAATTATCTTGTCGCGAATTTCTATGACGATATTAAAGAAGAAGGAGAGTGGAAGAAGGAATGGCACGACAAACACCCATCGGAAGTGGAACATTACAAATTCTACTATCTTTTCGAATCTCGTTGGT------TTTTCATCGTTCTCGTC---TGGTTCCATCTGAATTAATGTCAATTAGAGCGGAGAATATATTTTAGGAATTCAATC-------GA--ATAA-------------ATGAAG-catggcaaaaaaaagaa------------aaaagtt-------------------------ttcaatattttcaatACAAAGCTACTTTTCAAACTCACGGAAGAACTTGatgttattta------ttt-acat--tcaTAAAATTGTCT----ACTAGAAATTATTAAT
i caeJap4.Scaffold18213 I 1079 I 4

a score=1809.000000
s ce10.chrX              2564306 5 + 17718866 GGAAT
s caeRem4.Crem_Contig15   133648 5 -  1794024 CGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    169195 5 +   484378 TGAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3282877 5 -  4147112 tgaat
i caePb3.Scfld02_0      C 0 I 218
s caeJap4.Scaffold18213   352305 5 +   720316 GGTAT
i caeJap4.Scaffold18213 I 4 C 0
e cb4.chrX              17315164 302 - 21540570 I

a score=-1136.000000
s ce10.chrX              2564311 3 + 17718866 CTT-
s caeRem4.Crem_Contig15   133653 3 -  1794024 TTT-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    169200 3 +   484378 TCT-
i caeSp111.Scaffold582  C 0 I 249
s caeJap4.Scaffold18213   352310 3 +   720316 -ATG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3282882 218 -  4147112 I
e cb4.chrX              17315164 302 - 21540570 I

a score=631.000000
s ce10.chrX              2564314 4 + 17718866 CTAT
s caeRem4.Crem_Contig15   133656 4 -  1794024 CCGT
i caeRem4.Crem_Contig15 C 0 I 171
s caeJap4.Scaffold18213   352313 4 +   720316 CTAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3282882 218 -  4147112 I
e cb4.chrX              17315164 302 - 21540570 I
e caeSp111.Scaffold582    169203 249 +   484378 I

a score=368.000000
s ce10.chrX              2564318 6 + 17718866 GCCAGA
s caeJap4.Scaffold18213   352317 6 +   720316 TCCAGA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3282882 218 -  4147112 I
e cb4.chrX              17315164 302 - 21540570 I
e caeSp111.Scaffold582    169203 249 +   484378 I
e caeRem4.Crem_Contig15   133660 171 -  1794024 I

a score=0.000000
s ce10.chrX              2564324 1021 + 17718866  
e caePb3.Scfld02_0       3282882  218 -  4147112 I
e caeJap4.Scaffold18213   352323    0 +   720316 C
e cb4.chrX              17315164  302 - 21540570 I
e caeSp111.Scaffold582    169203  249 +   484378 I
e caeRem4.Crem_Contig15   133660  171 -  1794024 I

a score=311.000000
s ce10.chrX              2565345 6 + 17718866 CATTCT
s caeJap4.Scaffold18213   352323 6 +   720316 CATTTC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3282882 218 -  4147112 I
e cb4.chrX              17315164 302 - 21540570 I
e caeSp111.Scaffold582    169203 249 +   484378 I
e caeRem4.Crem_Contig15   133660 171 -  1794024 I

a score=1318.000000
s ce10.chrX              2565351 29 + 17718866 TCCTAC-TCCATATTTAATTTAAGCTTCTT
s caeRem4.Crem_Contig15   133831 28 -  1794024 TCCTGT-TTCA-ATCTGGTGAAAGCTAATT
i caeRem4.Crem_Contig15 I 171 C 0
s caeJap4.Scaffold18213   352329 30 +   720316 TCCCACATCCACTACTAATTAAAACTTCCT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3282882 218 -  4147112 I
e cb4.chrX              17315164 302 - 21540570 I
e caeSp111.Scaffold582    169203 249 +   484378 I

a score=-3057.000000
s ce10.chrX              2565380 26 + 17718866 ---------AGAGAATAGTT------------TTTATATATTCTAAC------
s caeRem4.Crem_Contig15   133859 38 -  1794024 ---------ATAAATTAGTTATTGTGGTAGCTTCTACTCCTACGGAT------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3283100 28 -  4147112 ---------AGAAGATATTT----------CTTCCATATCTACTAGT------
i caePb3.Scfld02_0      I 218 C 0
s caeJap4.Scaffold18213   352359 41 +   720316 AAGATGCCAAATAACTACTT------------GTTATTCATCCTTCTCTCAAC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17315164 302 - 21540570 I
e caeSp111.Scaffold582    169203 249 +   484378 I

a score=16241.000000
s ce10.chrX              2565406 44 + 17718866 TATGCCTAAGATTGCAGTAATCCTTGGTCAAAGCCAACAGTCTA
s caeRem4.Crem_Contig15   133897 44 -  1794024 TATGACTAAGATTGCAGCTATGCCTACTTCTGCTCAACAAACTA
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    169452 44 +   484378 TATGACTAAGATTGCAGCAATGCCGGTTCGTGCTCAACAACCtc
i caeSp111.Scaffold582  I 249 C 0
s caePb3.Scfld02_0       3283128 44 -  4147112 TATGACTAAGATTGCAGCAATGCCAACTCAACCTCAACAGCCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   352400 42 +   720316 TATGACTAAAATTGCAGCCATGCCAGCACGAAGTCTTGTTTC--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17315164 302 - 21540570 I

a score=8206.000000
s ce10.chrX              2565450 112 + 17718866 GA--------AATTCAAGGATGGTTGTTACACGAGTAATTTCTGGAAACCAGGTGAGTAAAAGTA--AGAGTGAA------------CCGAAAAAT----GCGAAAATTCTAGAAGATGAGAACCTTC----------------------CGAGCAGGGT
s cb4.chrX              17315466 105 - 21540570 GA--------AACTCTCGAGTTGTAAGCGCTCGATTATTTTCTGGAAACCAGGTAAGCAAGAAAA-CTaaaagaa--------atttctagaa-----------actttctAGCAAATAGAGAG---------------------------GAGCACCTA
i cb4.chrX              I 302 I 42
s caeRem4.Crem_Contig15   133944 105 -  1794024 GA--------AATTCGAGAGTCGTTACTGCACGAATTGTTTCTGGAAACCAGGTGAGTAAGCGAG--TGACAGAA------------TTGGAG-----------AATTTCCAGCAAATAAAAAGCGCT----------------------AGAGCACCGA
i caeRem4.Crem_Contig15 I 3 I 1
s caeSp111.Scaffold582    169496 117 +   484378 ga--------aattcaagaattgtCACTGCCCGACTTCATACTGGAAATCAGGTAAGCAAGAAATtctgatagaa--aaattgggttCTAGAAG----------AAATTCGAGTGAAAAGAACC-GCT----------------------AGAGCACATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3283172 104 -  4147112 GA--------AATTCAAGAGTGGTTACTGCACGGCTTCACACTGGAAACCAGGTAAGTGAGAA------------------TGATTTCTAGGAGA-------AAAAATGCGAGAAAACGAAACC-AAC----------------------AAGGCTATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   352442 151 +   720316 GAACGTTCCTACTTCTAGAGTTGTTACTACTCCGTTCGTTTCAACAAATCAGGTGAGTA--------TCATACAATAAAGttcaataacaaaaaattgacgcCAAATCatcaacaaataaaaaa-actttCGCTGCTGCGGAGCTCGAGGGGAGCCCATT
i caeJap4.Scaffold18213 C 0 C 0

a score=-9106.000000
s ce10.chrX              2565562 32 + 17718866 TTGATAAAA--------------ATGCCCCGTTATAATAAC-GAAAC--------------
s caeRem4.Crem_Contig15   134050 29 -  1794024 CTGATAGAC-------------GAGGCCCCGTT----ATAT-GCAAA--------------
i caeRem4.Crem_Contig15 I 1 I 1
s caeSp111.Scaffold582    169613 28 +   484378 CTGATAAA---------------ATGACTAGTT----TATTCGTGGT--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3283276 28 -  4147112 CTGATAACT--------------TTTACCCGTT----TGAT-ATGAC--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   352593 56 +   720316 TTTGCAGAGCTGCAACGTGTCAAACGTTTCAAT----AAAG-GCAACATTGAGGAAGATAC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17315571 42 - 21540570 I

a score=155024.000000
s ce10.chrX              2565594 391 + 17718866 TGATAAC-AACAATCGC------TACAAACAT--AGATAA------GAACCCCGAAGGAGAATTTGT---TGTTTCAGGGTCAATACTTGACTGTTCCATCGACAATCTACGTTGCGCGCGCAAATCATCTACACTCG---GAACCTTCATGTGAGGGCAAG------AACATACTTTGGTAATGC-----------GAAAA--------------GATGAAACATTGGAGAG-AAAGTAAACT----TTACAGCATCAAACTGTGCGCCTGTCTTGTCATCGTTTTCGTGTTTTGTGTGCTCATTGTGTTCATTTACGCCATGTTACTAGCTCAGTTCAGCGACAACCAGCTTCAACTCAACAACGACAGTTTGATGGCTGCGTTGGTGAAGCCAGAGGA-----TGTGAAA---------ATACATAACAAA-TTAGAATGATATATCATTTTTAAA-------GCTA
s cb4.chrX              17315613 401 - 21540570 TAACAGC-AAAAACCGT----TGTACAATCATAAAGATAA--GGCCTCGC--CGACG--GAATGTGTTTGTGTTTCAGGGTCAATACTTGACTGTTCCATCAACAATCTTTGCGACACGCGCGAATCAACTACAAACT---GAACTACCATGGCAGGGAAGA------AATAT--------------------------------TCTCTGGTATGGAGGAGGCACAAGAAATATGAGTAAATTTTGTTTACAGTATCAAACTATGCGCCTGTATTATGCTCGTGCTCCTGTTCTGTGTGCTCACAGTGTTCGTTTACTCAATTCTACTGGCCAAATTCAGCGATAGTGAGAGTCGAATGAACAGCGACAGTTTGCTGACTGCACTAGTCAAACCCAAGGATAACTAATAcagtactgtatttttcacgTATTT-TCCAGATG----ATGTTTG------------GTCA
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   134080 391 -  1794024 TGATAAC-AATAAACGC------TACAAACAT--AGATAA------CTGC--CGACG--GAATGTGT---TGTTTCAGGGTCAATACCTAACTGTTCCATCAACAATCTACATTGCGCGCGCAAATCAACTACAAACG---GCACCACCATGGCAAGGAAAG------AACATACTGTGGTTAGGA-----------GGGAA---TCTCGGGTTTagagaaaacatgaaaaagttAAGTAAACT---TTTACAGTATCAAGTTGTGTGTCTGCATTGTTCTCGTATTCGTGTTTTGTGTGCTCACCGTTGTCATTTACTCAATTCTGCTGGCCAAGTTTAGCGACAACGAGAAGAAAATCAACAGCGAAAGCTTGTTATTTGA---TGACAAACCAACAGA-----AGTACAG---------ATACATGGCTAG-TCAGGACAA-CCATAATTT------------ATGA
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    169641 384 +   484378 TGATAAC-ACTAAACGC------TACAAACAA--TGATAA-----CAGAT--CGACG--GAATGTGT---TATTTCAGGGTCAATACCTGACTGTTCCATCAACAATCTACATTGCGCGCGCAAATCATCTACAATCG---GAACCACCATGGCAAAGAAAG------AACATTCTTTGGTTAGAGAA---------ACAAACTGTTTCGGA---GGGTAGAAC----GACAGTAAAGTAAACT-----TGCAGCATCAAACTGTGTGCCTGCATTGTGCTCGTTTTCTTGTTCTGTGTGCTCACTGTGTTCATTTATTCGATTCTATTGGCCAAGTTCAGCGACAGTGAAAACAGAATTAATAGTGACACTCTTCTAGCCGCTTTAGTTAAACCAAAAGA-----CGCAGAA---------GTGt-tcttttg-------------aacattttaaaC-------ATGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3283304 399 -  4147112 TGATAAC-AGTAAACGC------TACAAACAT--TGATAA-----CAGGCCACAACG--GAATGTGT---TATTTCAGGGTCAATACCTGACTGTTCCATCAACAATATATGCTGCGCGCGCAAATCATCTCCAAACG---GAACCACCATGGCAAGGCAAA------AACATACTGTGGTTAGAG-----------ATAAACCGTCCCG---------ATAAC---AAATAACAAAGGAACTT-----TGCAGCATCAAACTGTGCGCCTGCATTGTGCTCGTTTTCGTGTTTTGTGTCCTCACCGTGTTCATATACTCAATTCTACTAGCCAAGTTCAGTAACAGCGAGGTTAGGATGAATAGTGATAGCTTAATGGCAGATCTTGTCAAACCAAAGGA-----ATCAGAG---------AAGCATAATTTGTTCAATACGA-GCAACTCTTTCAACTAAACGTATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   352649 428 +   720316 TGATAACGAATAGGCGCAATGTTTACTGGC----TGATAACTGCCAAAAC--CAACG--GAATGTGT---TGTTTCAGGGTCATTATCTGACTGTTCCATCAACGCTCGAGATTGCGCGCACTACTCAACGACACGTGAGAGAACCACCGTGGATGGAAAATGAGAACAATACACTTTTGTAAGGCAAgccaagcagaaaaaaaaactgagaaaggagaaaaagaaaaactactTAAATAAACT-----TGTAGCCGCAAACTTTGGATCTACTTGGTGTTGGTTTTCTTGTTATGTGTGATCACTGCTCTTGGCTACACGTTTATGCTGACAAGGT---ACGATGAAGAgccgaaaatcaataatgaaAGTCTATTGGCCGCTTTGGTGGATGCTAGGAA-----GATGAGG---------CTCAACAAAAAG-GAAAACCAA-Accttattttgaaa-------aata
i caeJap4.Scaffold18213 C 0 I 232

a score=-143120.000000
s ce10.chrX              2565985 665 + 17718866  
s cb4.chrX              17316014 521 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   134471 305 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    170025 354 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3283703 439 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   353077 232 +   720316 I

a score=198746.000000
s ce10.chrX              2566650 241 + 17718866 TCAATA---AATATAAAATTAAGGAACGGTATAAAAGTCAACACTAACTAAAAGAATGATATGAGCATGTTCTTTAGACACATTAAACTGTGGGCATGAGATTCGCATGTTAGCGACGACGGCATTCGATCCTCCGAGAGATAATATTGACTTGATTGTTGTTATTCTTTCCTCAAGCGCGCTGGTCACAAAACCGTCCACTGTGGTAGAGTCGCGGACAGCAGTTGTCAGATCTTCCCT-----GGAA
s cb4.chrX              17316535 234 - 21540570 A----------TCAAAGGTCATGGCATGTTATAGAAATCCACGCTAACTAGTAGGATGATATGAGCATGTTCTTTAGAGACATTAAACTGTGGACACGAGATTTTCATATTTGCCACGACGGCGTTTGATCCGCCAAGAGATAGGATTGACTTGATGGTTGTTATTCGTTCCTCCAGTGCGTTGGTTACAAAACCATCGACCGTTGTTGAATCACGCACCGCTGTGGTGAGGTCTTCTCT-----GGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   134776 236 -  1794024 A----------TCA---GTCACGGcaaattataaaaatcaaCACTGACTAAAAGAATAATATGAGCATGTTCTTTGGAAACATTAAACTGTGGacatgaaattttcatgtttgcCACAACTGCATTCGATCCTCCAAGAGATAATATTGACTTTATGGTTGTTATTCGTTCCTCCAGCGCATTAGTTACAAAACCGTCGACGGTTGTCGAATCTCGGACGGCGGTGGTCAAGTCCTCCCTATAACGGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    170379 227 +   484378 A-----------------TCATGGAACATTGTAAAAATCGACactaactaataaaataatatGTGCATGCTCTTTGGAAACATTAAATTGTGGACATGAAATTCTCATGTTGGCAACAACTGCATTCGATCCTCCGAGAGATAGTAATGACTTGATGGTGGTTATTCTCTCTTCAAGTACGTTCGTCACAAAACCGTCCACTGTTGTTGAATCACGAACTGCTGTTGTCAGGTCTTCtct-----ggaa
i caeSp111.Scaffold582  C 0 I 39
s caePb3.Scfld02_0       3284142 238 -  4147112 ACGTTA---GGTCA---GTCATGGAACGTTATAAAAATCAACGCtaactaataaaataataTGTGCATGCTCCTTAGAAACATTAAACTGTGGACAAGATATTCTCATATTCGCCACGACGGCGTTTGATCCTCCAAGTGATAGTATTGACTTGATGGTGGCGATTCGTTCTTCCAGTACATTAGTTACAAAACCATCCACTGTTGATGAGTCCCGAACGGCGGTTGATaaatcttctct-----gaaa
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18213   353309 241 +   720316 ---TCATGGAATAAAAGATCATGGAACATtgtaaaaatcaacagaaaccAGCAAGATGATATGAGCATGCTCTTTGGATACATTAAACTGGGGGCAAGAAATCTTCATGTTGGCAACAACTGCATTCGATCCTCCAAGAGATGAAATTGTTTTGATTGTTGCTATTCTTTCCTCAAGCGCGTTGGTCACAAAGCCATCGACTGTTGTGGAATCGCGAACTGCAGTTGTCAAGTCTTCTCT-----GCAA
i caeJap4.Scaffold18213 I 232 I 81

a score=273.000000
s ce10.chrX              2566891 1 + 17718866 T
s cb4.chrX              17316769 1 - 21540570 T
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig15   135012 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3284380 39 -  4147112 I
e caeJap4.Scaffold18213   353550 81 +   720316 I
e caeSp111.Scaffold582    170606 39 +   484378 I

a score=506.000000
s ce10.chrX              2566892 15 + 17718866 AATTTCCAATATTTC
s caeRem4.Crem_Contig15   135013 15 -  1794024 TGTTGCTAATTTTTC
i caeRem4.Crem_Contig15 C 0 I 15
e caePb3.Scfld02_0       3284380 39 -  4147112 I
e caeJap4.Scaffold18213   353550 81 +   720316 I
e cb4.chrX              17316770 36 - 21540570 I
e caeSp111.Scaffold582    170606 39 +   484378 I

a score=0.000000
s ce10.chrX              2566907 680 + 17718866  
e caePb3.Scfld02_0       3284380  39 -  4147112 I
e caeJap4.Scaffold18213   353550  81 +   720316 I
e cb4.chrX              17316770  36 - 21540570 I
e caeSp111.Scaffold582    170606  39 +   484378 I
e caeRem4.Crem_Contig15   135028  15 -  1794024 I

a score=182.000000
s ce10.chrX              2567587 2 + 17718866 TT
s caePb3.Scfld02_0       3284419 2 -  4147112 TT
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold18213   353550 81 +   720316 I
e cb4.chrX              17316770 36 - 21540570 I
e caeSp111.Scaffold582    170606 39 +   484378 I
e caeRem4.Crem_Contig15   135028 15 -  1794024 I

a score=-99.000000
s ce10.chrX              2567589 2 + 17718866 CA
s caePb3.Scfld02_0       3284421 2 -  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   353631 2 +   720316 CA
i caeJap4.Scaffold18213 I 81 C 0
e cb4.chrX              17316770 36 - 21540570 I
e caeSp111.Scaffold582    170606 39 +   484378 I
e caeRem4.Crem_Contig15   135028 15 -  1794024 I

a score=910.000000
s ce10.chrX              2567591 1 + 17718866 T
s caeRem4.Crem_Contig15   135043 1 -  1794024 T
i caeRem4.Crem_Contig15 I 15 C 0
s caeSp111.Scaffold582    170645 1 +   484378 T
i caeSp111.Scaffold582  I 39 C 0
s caePb3.Scfld02_0       3284423 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   353633 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17316770 36 - 21540570 I

a score=214968.000000
s ce10.chrX              2567592 389 + 17718866 ACCTGACAAAAACATCAGAAAATCTTGCAACCGGTAGCATTCCTTCAATAACATCCTTGTTAACAAACTGGGGATACAGTGAATTCGACAAATGAACTCCAGCAATCTAAAAAT-----------TTCCATTTATCTGATCTTCGTTAATATGCACAAATCTC--------ATACCGAAGTAGCATTTCCGGCGCTTTGGTTCTCATGAATTCCGATTGATAGACTCATATGCCGTTCAAACACCACATGGGATACATATTCCTTATGTTGTTTTCTTCG---AACCTGATATGATCAAAAATAGATTGATATTGGTTATCTGTT------------AAGTTACCTTATCAACGATTGTGTTTAGCCGTAGGCGACTTTTGGCGGATGAAGAATTATTGTCGTCCACTCCTTGCCTGTA-A------TGT
s cb4.chrX              17316806 395 - 21540570 ACCTGACAAAAACATCAGAGAATCGGGCAACGGGCAGCATTCCATCAATAACATCTTTGTTCACAAAAATTGGGTACAAGGAGTTGGAGAGGTGGACGCCAgcgatctgaaa----------atgttctatttttgttttttctttcgat---------tttctagTATTGATACCGATGTAGCGTTGCCTGCGCTTTGATTCTCGTGTATGCCAATCGAGAGACTCATATGCCGCTCGAAAACCACATGCGACACATATTCCTTGTGCTGTTTCCGTCGGACtacaaaaattaag-------atttcaTAACAAAATTGATCTATATC--------AAACCACCTTATCAACAATTGTATTCAATCTCAGGCGACTTTTTGCCGCAGTCGCATCCTTGTCTTCAGTCGTTTGTCTGAG-AAATTTTTGT
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig15   135044 390 -  1794024 ACCTAACGAAAACATCACAAAATCTTGCAATTGGCAACATTCCTTCTATGACATCCTTATTTACAAAATGTGGGTATAATGAGTTTGAAAGATGCACTCCAGCAATCTGAAATA---TCTTTCTGTGCTCATAATGTATCTTTCATAGAC---------TCCC--------ATACCGATGTTGCATTTCCTGCGCTTTGATTCTCATGTATTCCTATAGATAAACTCATATGTCTTTCAAATACGACATGCGACACGTATTCCTTGTGTTGCTTTCTCCG---CACCTAGAATAAG-------ATATCGTTACCGGTTGCCCCTCCATTC---ATCAAAGTCACCTTATCAACGATTGTATTCAGTCGAAGGCGACTTTTCGCTGACGAAGAATTATTGTCGTCCATTGATTGTCTGAG-A------TGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    170646 391 +   484378 ACCTAACAAACACATCAGAGAATCTTGCAACTGGTAGCATTCCTTCAACAACATCTCTATTCACAAAATGTGGGTAAAGGGAGTTTGATAAGTGTACGCCGGCaatctgaaact----tttcaCGTCCCTATTTAGTATCTTCTTTC------------------------ATACCGAAGTGGCATTCCCCGCACTCTGATTTTCATGTATTCCAATTGATAAACTCATATGTCTTTCGAAAACGACATGAGATACGTATTCCTTGTGTTGTTTTCTGCG---AACCTAGAACATAT--GGGTGTGTTATTATCTGATGTTTTTGTTCCGTATGCCAGAATCACCTTATCAACAATTGTATTCAATCGAAGTCGAGTTTTTGCTGACGAAGAACTATTATCGTCCATTGACTGTCTGtgaa------tgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3284424 392 -  4147112 ACCTAacaaaaacatctgaaaatcttgcaACTGGTATCATTCCTTCTACGGCATCTTTGTTCACAAACTGAGGGTACACAGCGTTTGAAAGATGAACTCCAGCaatctgaaatcagaatttta--tCCCTTTTCTGAGATCCCTTGT------------------------ATACCGAAGATGCGTTCCCTGCGCTTTGATTCTCATGTATCCCTATTGATAGACTCATATGTCTTTCGAAAACGACATGTGATACATATTCCTTGTGTTGCTTTCTCCG---AACCTATAAAACAT--GGCTGTGTATTCGCcggttttctgtttcttctttgcCAAAATCACCTTATCAACAATCGTATTCAAACGCAAACGACTTTTCGCGGACGTTGAATTATTATCTTCCATCGACTGTCTGTG-A------TGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   353634 390 +   720316 ACCTCACGTAAACATCCGAGAAGCGAGCGACAGGCATCATGTTTTCAATCATGTCCTTGTTCACAAATTGTGGATAGAGGGACGACGACAAGTGTACTCCAGCAATCTGAACTTCTACTTTTGCGCGTCAAACAT-CATTCTTTTCTAGC---------------------CTACCGAAGTGGAATTTCCCGCACTTTGATTCTCATGAATCCCAATCGACAAACTCATATGGCGTTCAAAAACCACATGAGAAACGTATTCCTTATGCTGTTTTCGCCG---CACCTGCAA-ACATAAAGAATCACAACTATCAATCATGGTTGTAGCCCTT-------TCACCTTATCAACTATTGTATTTAGCCTGAGGCGACTTTTTGCTGATGTTGATGAGTTGTCATCTATGCCTTGCCTTga-a------gat
i caeJap4.Scaffold18213 C 0 I 42

a score=5436.000000
s ce10.chrX              2567981 37 + 17718866 TGCAAACATAAGACAATTGGAAAGAGATCAAAAAACG
s cb4.chrX              17317201 29 - 21540570 TGCA-AGATGAGATCGAAAAACGCACATCA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   135434 36 -  1794024 Tgcg-aaatgagagaaaagggaaaagatcAAGAAACG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    171037 37 +   484378 ttcgaaattagAAACAATGAGAGAAGATCGAAAAACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3284816 36 -  4147112 TTCG-GAttagaaacaaagaaaagagatcGAAGTACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   354024 42 +   720316 I

a score=157460.000000
s ce10.chrX              2568018 176 + 17718866 CTCACTTGATGTTGAGAATTTTCAATGTCAAGTTGGATTGGACAGTTGGCTTGAACCGGATCGCATCCCTCACTGTTCCCCACGAGAACCTACGCGCGTCGTGCTGACGTTGGAGAGAGGAGAACGAGAGCACATTACTGATTGAAGGGGAGGCTGCATCAGCTTTCTGGAATTGT-
s cb4.chrX              17317230 173 - 21540570 CTCACTTAATGTTGAGTATTTTCAATGTCAGGTTTGACTGGACAGTTGGTTTGAATCGGATCGCATCTCGTACGGTTCCCCATGAGAATCGACGAGCGTCGTGTTGTCGTTGAAGAGAGGAGAAGGAAAGGACGTTGGTGATTGATGGCGATGCTGCTTccgttttctagaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   135470 175 -  1794024 CTCACTTGatgttgagaattttcaatgtCAAATTCGACTGGACGGTCGGTTTGAATCGGATAGCATCTCTCACTGTGCCCCATGAAAATCGTCTTGCGTCGTGCTGACGTTGgagtgaagaaaatgaaagtacGTTGGTGATTGACGGGGATGCCGCTTCGGTTTTCTGAAGA-AT-
i caeRem4.Crem_Contig15 C 0 I 338
s caeSp111.Scaffold582    171074 175 +   484378 CTCACTTGATGTTAAGTATTTTCAATGTCAAATTCGATTGGACGGTGGGTTTGAATCGGATAGCATCTCTTACAGTACCCCATGAAAACCTTCGTGCGTCGTGTTGAcgttgaagagaagaaaacgaaagtaCATTGGTGATTGACGGCGAGGCAGCCTCGGTTTTCTgaaca-at-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3284852 175 -  4147112 CTCACTTTatgttgagaattttcaatgtcaaGTTCGACTGGACAGTCGGTTTGAATCGGATAGCATCTCTTACAGTACCCCATGAAAATCTTCGGGCGTCATGCTGTCGTTGCAAAGAGGAGAATGAAAGTACATTAGTGATGGAGGGGGACGCTGTTTCggttttctgaatt-at-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   354066 176 +   720316 CTTACTTGATGTTTAGTATTTTTAGAGTCAGATTAGACTGAACTGTTGGTTTGAATCGTATGGCATCGCGCACTGTACCCCAGGAAAACCGTCTTGCGTCATGTTGACGCTGGAGTGAAGAGAACGAAAGAACATTTGTTATTGATGGAGAAGCAGCctcagttttctgaaat-tgg
i caeJap4.Scaffold18213 I 42 C 0

a score=-251.000000
s ce10.chrX              2568194 3 + 17718866 ATC
s cb4.chrX              17317403 3 - 21540570 att
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    171249 2 +   484378 -cg
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3285027 2 -  4147112 -tt
i caePb3.Scfld02_0      C 0 I 427
s caeJap4.Scaffold18213   354242 3 +   720316 gct
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   135645 338 -  1794024 I

a score=-873.000000
s ce10.chrX              2568197 27 + 17718866 ----GAAATTTCGTGGAAAATT---CGTGGAAGA
s cb4.chrX              17317406 30 - 21540570 ----ggaatattgagaaaagtattacttttaaaa
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold582    171255 21 +   484378 ------aaaattgaaagaagtg-------gaaga
i caeSp111.Scaffold582  I 4 I 363
s caeJap4.Scaffold18213   354245 31 +   720316 tcaaacatttttggagaaagtt---cgtcaatta
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3285029 427 -  4147112 I
e caeRem4.Crem_Contig15   135645 338 -  1794024 I

a score=-406.000000
s ce10.chrX              2568224 7 + 17718866 ATTTTTT-
s cb4.chrX              17317438 7 - 21540570 atttcag-
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold18213   354276 7 +   720316 -tttttct
i caeJap4.Scaffold18213 C 0 I 3117
e caePb3.Scfld02_0       3285029 427 -  4147112 I
e caeSp111.Scaffold582    171276 363 +   484378 I
e caeRem4.Crem_Contig15   135645 338 -  1794024 I

a score=-7613.000000
s ce10.chrX              2568231 862 + 17718866  
s cb4.chrX              17317445 617 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3285029 427 -  4147112 I
e caeJap4.Scaffold18213   354283 3117 +   720316 I
e caeSp111.Scaffold582    171276 363 +   484378 I
e caeRem4.Crem_Contig15   135645 338 -  1794024 I

a score=453.000000
s ce10.chrX              2569093 13 + 17718866 TCACCGTTTGATC
s caeRem4.Crem_Contig15   135983 13 -  1794024 tcaatttttgatg
i caeRem4.Crem_Contig15 I 338 C 0
e caePb3.Scfld02_0       3285029 427 -  4147112 I
e caeJap4.Scaffold18213   354283 3117 +   720316 I
e cb4.chrX              17318062  0 - 21540570 C
e caeSp111.Scaffold582    171276 363 +   484378 I

a score=9436.000000
s ce10.chrX              2569106 54 + 17718866 GCATAGTTATAACTGCTAACTTTATA--ACTGATAACAGATCATGATTTTCGT-----------GCG
s cb4.chrX              17318062 45 - 21540570 --ATAGTTATTGCTTCTAATTTTATGCCTAATCTAATAAAACA--------------------ACCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   135996 59 -  1794024 gcATAGTTATAACTGCTAACTTTATG--TGAGATAACAGAATAGAGTGTCTTT------TGATACTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    171639 58 +   484378 gcaTAGTTATTGCTGCTAACTTTATG--TGTGATATCAAAATAGAGTGTAACt-------aaaactg
i caeSp111.Scaffold582  I 363 C 0
s caePb3.Scfld02_0       3285456 65 -  4147112 GCATAATTATAATCGATTATTCCAAG--TGTGCTAGGTAAATAGAGTGTAATTCGGGTACGGGACTG
i caePb3.Scfld02_0      I 427 C 0
e caeJap4.Scaffold18213   354283 3117 +   720316 I

a score=305318.000000
s ce10.chrX              2569160 418 + 17718866 ATAAAAACACGAAATGGAGACTACAC------------ACTTACCTGTATGACAAGGAGACGAACTAAAACGCCGGTGATGATGCACACTAGAGAATCGTCGCATACTGCATTTGTGATGTCAAGAGCGAAAATTGCGTTGCCCAATGGATAAACACTTTTCGCCTCAGTCAGCAAGTTGCCAATCAATTCGTGGTCAGAGTACGGCAACGCCTGCAA-------GCCCGTCTCTCTGTGCTGT-------TGGAATTGAAA---TTGCAACATTA-AGA-------------CTTATCACTAACATTGCCGATGTCTGACGCGTAGTCGGCCGTTTCATTCGGATCGCTCGATATTTTCTTGCACACAGACACTTGAATGAAGTTACGGGGGCCAGCGTAGTATTGCGGTGGTGGGCATTGTTGGGTGGACAAAATGAATTCCGAAACTAGCCCGTTTCT
s cb4.chrX              17318107 431 - 21540570 ATAAGA----AAAGTGTG---TGTTC-----TGAC---ACAAACCTGTATGACTAAGAGGCGAACCAGCACTCCGGTAATAATGCACACCAGCGAGTCGTCACAAATGGCGTTAGTGATGTCGAGCGAGAAGATTGCGTTTCCCAACGGATAAACACTTTTCGCCTCGGTCAGCAAGTTGCCAATCAATTCGTGGTCAGAGTACGGAAGAGCCtgcaaaaagaagagagcTCGTTGTTTGTC------------AATCGACT---TCGCAACATTTGAAACACAACGCAATTATTTATCACTGACGTTTCCAATGTCTGCAGCATAGTCTTGCGTTTCGTTTGGGTCACTTGCAATCTTCTTACACACGGAGACTTGAATGAAGTTGCGTGGACCGGCGTAGTATTGGGGTGGAGGGCATTGTTGGGTGGAGAGCACGAATTCGGAGACGAGACCACCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   136055 426 -  1794024 ATAAGAGCATGAAACGAA---TGGACATGAATGAC---ACCGACCTGTATGACTAGAAGGCGAACCAAAACTCCGGTAATGATGCACACAAGGGAGTCATCGCAAACAGCATTTGTGATGTCGACGGCGAAAATTGCGTTGCCCAACGGATAAACACTTTTCGCCTCAGTCAGCAAGTTGCCAATCAATTCGTGGTCAGAGTATGGCAGAGCCTGCAATGAAGAAAGAGAGTTTTGTTTGTC------------AACTGAAT-----gcaacatttgaaat------------tttatcacTGACGTTTCCAATGTCTGCAGCGTAATCTGACGTTTCATTCGGATCACTCGCTATTTTCTTGCAAACGGAGACTTGAATGAAGTTGCGTGGACCAGCGTAGTATTGAGGTGGTGGACATTGTTGAGTGGATAAAATAAATTCTCCAACAAGGCCATTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    171697 411 +   484378 ataaga----------------acTCATGAATAAGC--ACAAACCTGTATAACGAGAAGTCGAACCAACACTCCGGTAATGATGCATACAAGGGAGTCATCGCAAACTGCATTGGTGAtatcaagagagaaaatagcGTTTCCCAATGGATAGATGCTTTTCGCCTCAGTCAGCAAGTTGCCAATCAATTCGTGGTCAGAGTACGGAAGAGCCTGCAA-------ATGAAGTTTTGTTTGTC------------AATTGAAACCGACGCAAAATCGACAA-------------TTTATCACTGACATTTCCAATGTGTGCAGCGTAATCTGTTGTTTCACTCGGATCACTTGCAATCTTCTTGCAAACGGATACTTGAATGAAATTACGGGGACCAGCATAGTATTGAGGTGGAGGACATTGTTGGGttgaaagaatgaattcTTGCACGAGACCGTTTCt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3285521 412 -  4147112 ATAACA---------------TACTCAACACAAACCCAACAAACCTGTATGACAAGAAGGCGAACCAAAACTCCGGTAATGATGCACACCAGGGAGTCATCGCAAACAGAATTAGTAATTGCAAGGGAGAAAATTGCGTTTCCCAACGGATAGATGCTTTTTGCTTCTGTCAGTAAGTTGCCGATCAGCTCGTGGTCAGAGTACGGAAGAGCCTGCAA-------AATGATTCTTGTTTGTC------------AAtttcaa-cattgaaaaattg-taa-------------tttatCACTGACGTTTCCAATGTCAGCAGCGTAATCGGCTGTTTCGTTGGGATCACTAGCAATCTTCTTGCAAACGGATACTTGAATGAAGTTGCGAGGACCAGCGTAATATTGAGCTGACGGGCATTGTTGTGTTGATAAAACAAACTCTCCGACGTGTCCAGTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   357400 426 +   720316 atgaaa-----aaaagaa---gataagaaaaaga----gcaaacCTGTATGACCAAAAGACGAACAAGCACTCCTGTTAAAATACAGACAAGCGAGTCGTCACAAACTGCATTGGTAATATTGAGCGAGAAGATTGCATTGCCGAGTGGATAAATGTTTTTCGCCTCGGTCAACAAGTTGCCAATCAATTCGTGATCAGAGTACGGAAGAGCCTACAACTCAACGTGTGTGTCGTgtttgttgcaaaaaaaaaaaaaagagg-----tcaAAACCAAAAA------------------CACTAACATTTCCAATATCTGCCGCATAATCGGATGTTTCATCTGGATCACTCGAGATTTTCTTGCAAACGGATACTTGGATGAAGTTGCGTGGTCCTGCGTAGTATTGTGCAGTAGGACATGTTTGGGTAGAGAGAATAAACTCGGAGACCAAACCATTTCT
i caeJap4.Scaffold18213 I 3117 I 47

a score=2074.000000
s ce10.chrX              2569578 4 + 17718866 GGAA
s cb4.chrX              17318538 4 - 21540570 GGAA
i cb4.chrX              C 0 I 282
s caeRem4.Crem_Contig15   136481 4 -  1794024 GAAA
i caeRem4.Crem_Contig15 C 0 I 44
s caeSp111.Scaffold582    172108 4 +   484378 ggga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3285933 4 -  4147112 GTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   357826 47 +   720316 I

a score=-642.000000
s ce10.chrX              2569582 3 + 17718866 ATG
s caeSp111.Scaffold582    172112 2 +   484378 at-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3285937 3 -  4147112 TTG
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18213   357826 47 +   720316 I
e cb4.chrX              17318542 282 - 21540570 I
e caeRem4.Crem_Contig15   136485 44 -  1794024 I

a score=532.000000
s ce10.chrX              2569585 8 + 17718866 TGAACAAT
s caeSp111.Scaffold582    172114 8 +   484378 tgaaaaat
i caeSp111.Scaffold582  C 0 I 17
e caePb3.Scfld02_0       3285940 28 -  4147112 I
e caeJap4.Scaffold18213   357826 47 +   720316 I
e cb4.chrX              17318542 282 - 21540570 I
e caeRem4.Crem_Contig15   136485 44 -  1794024 I

a score=0.000000
s ce10.chrX              2569593 804 + 17718866  
e caePb3.Scfld02_0       3285940  28 -  4147112 I
e caeJap4.Scaffold18213   357826  47 +   720316 I
e cb4.chrX              17318542 282 - 21540570 I
e caeSp111.Scaffold582    172122  17 +   484378 I
e caeRem4.Crem_Contig15   136485  44 -  1794024 I

a score=208.000000
s ce10.chrX              2570397 6 + 17718866 TTTTCC
s caeSp111.Scaffold582    172139 6 +   484378 TTTTGT
i caeSp111.Scaffold582  I 17 C 0
e caePb3.Scfld02_0       3285940 28 -  4147112 I
e caeJap4.Scaffold18213   357826 47 +   720316 I
e cb4.chrX              17318542 282 - 21540570 I
e caeRem4.Crem_Contig15   136485 44 -  1794024 I

a score=546.000000
s ce10.chrX              2570403 1 + 17718866 A
s cb4.chrX              17318824 1 - 21540570 a
i cb4.chrX              I 282 C 0
s caeSp111.Scaffold582    172145 1 +   484378 A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3285968 1 -  4147112 A
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18213   357826 47 +   720316 I
e caeRem4.Crem_Contig15   136485 44 -  1794024 I

a score=103496.000000
s ce10.chrX              2570404 150 + 17718866 CCTACTTGCAATATGAACATGGCAGCACTTTACTCGGAGAATGGTACTTTGTCTCGTGGCTTGGGCTATGAAACTGGTTGCATCTGAATGCCCTCGGTGCAGAATCAGATCTCTTTTCGCGACCTTCGGATCCATTAAACTGAAATTAAA----------
s cb4.chrX              17318825 150 - 21540570 CTCACTTGCAATATGCACATGGCAAACTTTTCAAAGGAGTCATATACTTTGTTTCGTGGGTTGGAGCATGAAATTGATTGCATCGGAATGCTCGTGGCGCTGAATCCGATCGTTTCTCGCGTCCTTCTGATCCATTGAACTGAAAGAAAA----------
i cb4.chrX              C 0 I 402
s caeRem4.Crem_Contig15   136529 150 -  1794024 CTTACTTGCAGTACGAACAAGCAAATGTTTTGCTCGGAGTGTGGTATTTTGTTTCATGATTCGGACAATGGAATTGATTGCAACGAAATGCTCGTGGAGCTGAGTCTGATCGTTTTTCTCGTCCTTCAGACCCGttgaactggaaaaaaa----------
i caeRem4.Crem_Contig15 I 44 C 0
s caeSp111.Scaffold582    172146 144 +   484378 CTCACTTGCAGTAGGAACACGACATCACTTTTCCAGGAATATGATATTTCGTTTCGTGAGCCGGACAATGAAACTGGTTGCATCGGAAAATCCTCGGAGCCGAATCggatctcttttctctgccTTCAGTGCCATTGAACTGAA----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3285969 150 -  4147112 CTTACTTGCAATAAGCACACGAAACTACTTTACTGGGAGAGTGATATTTTGTTTCCTGTGTTGGACAGTGGAATTGATTGCAACGGAAAGCTCTTGGAGCTGAATCAgatctcttctctcttccttcaGAAccattgaactgaaaatatt----------
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18213   357873 160 +   720316 CTTACTTGCAGTATGCACACGACACAATTTTGGTAGGGTTGTGGTATTTTGTTTCTTGGCTGGGGCAGTGAAATTGATTGCACCGAAACGCTCGAGGAGTCGAATCGGATCGCTTTTCACGAGCATCTGATGCGTTGAACtggaaatattgtgttttcaa
i caeJap4.Scaffold18213 I 47 C 0

a score=-32400.000000
s ce10.chrX              2570554  76 + 17718866 -------------TAAG----------------------CTTTCATAAATTTTAGCAGTTTTTAACT----------AA----------GATGTGATTCCC-------------TAAGTGAG--------CATGTACTCACA--------CGAGTGAAGA
s caeRem4.Crem_Contig15   136679  87 -  1794024 ----------------------------------------tttcaaaaatttgcaatgtttcaaattgtgcCAACTGAATGAAATCACTGATGTTGTTTTT-------------CAAGTGA------------ATTTGTCGG--------TTAAGAACAG
i caeRem4.Crem_Contig15 C 0 I 19
s caeSp111.Scaffold582    172290  30 +   484378 ----------------------------------------------------TTAATGTATCTAGTT-------CTCAA-------------------------------------------------------TTCTTCCA--------CG--------
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3286143  62 -  4147112 ----------------------------------------------caattttgaatatattt--tt-------cttgaag-----acaGATGCAG------------------AGAGTGA------------TTTCTTCTG--------TGAGAGATAT
i caePb3.Scfld02_0      I 24 I 4
s caeJap4.Scaffold18213   358033 151 +   720316 tcgacttgcgacatgagaacgcgagactccgccacCTACTTGTTGTcagttctgtctgcgtct--ct-------tctaacTATACTACTCGTGTTCGTCGTGGTCGCgcataaataagtgggcggagtctcgcgttctcatgtcgcaagtcgattgaaaa
i caeJap4.Scaffold18213 C 0 I 35
e cb4.chrX              17318975 402 - 21540570 I

a score=190614.000000
s ce10.chrX              2570630 412 + 17718866 AGAGGAC----TATACCTTAAAAAGCGCTTTCCTTTCCTTGTTCTCTTTTTCCACAGATTCTCTGACAACAACTGGACTATTCCTTGCACTTGTGTCGTTTGCGGCATAATTC-----ATACCAAAAGTTTCCGATCCATCAGACATCATCACAGCAGTTCCGGTGCACGTGAGCAAAGCAACTCCTGAAA----TTAGCTCTAAATCCTCTTCCT-------------TAA----TTCTAGAAATCT-ACCTTCATTCACGTTGACAGCTTCTGTGTATCCAATAATCAAATTGCACCCAATACTTCTGGCTTGTTGAAAAATTTCCGCCCGCAAAGATACCCAGTAGCTTCGGCGTACGGATTCGGGATCTTCATCCTCATTTAGAAGTTTGATGGATCGTGAAGTTAACAGCGATCCTAATCCGATTTGCCTGACATGAT----
s cb4.chrX              17319377 394 - 21540570 AGACAAA----TCTACCTTAAAAAGCGCTTTCTTCTCCTTAATCTCCTTCTCACAAGAATCCCTAACGACCACTGGACTATTCCTGGCGCTTGACTCATTGCCACCAAT-----------------TGCCTCTGATCCATCAGACTGCACCACTGCAGTTCCTGTGCACGTGAGCAAAGCGACACCTGCAA----TTTAATTATATTCGCTTTTGT------TATCTG-AAA----TTATCCAAACCT-----TCATTCACTATGACCGACTCTGTGTAACCAACAATCAGATTGCAGCCTATACTCCTTGCTTGCTGAAAAATCTCCGCTCTCAGAGCCACCCAATAGCTACGGCGGATTGCTTCAGGGTCCTCGTTTTCGTTCAGGAGTTGCAGAGAGCGAGCAGTGAGGAGAGAACCAAGACCAATTTGTCT------------
i cb4.chrX              I 402 C 0
s caeRem4.Crem_Contig15   136785 420 -  1794024 ---ATGA----TTTACCTTGAATAAcgcctttttctcttttatttcctTCTCACTGGAATCTCTGATGACGACTGGACTGTTTCTGGCACTTGACTCGTTTGGACCATTATTT-----GTGTTGGCTGGTTCAGATCCATCAGACAACACAACGGCAGTTCCGGTGCAGGTGAGTAGTGCAACAGCTGCAA------TAGTGAAAATAGGTTGTTTCTCGAATAAATG-GAGAATTTTATGCAAAACTTACAGTCATTCACATTAACAGACTCTGAGTATCCAACAACCAGATTGCAACCAACACTTCTTGCTTGTTGAAAGATTTCAGCTCTCAATGCAACCCAATAATCGCGGCGAACGGTTTCCGGATTTTCATCCTCATTCAGAATTTGTATAGAACGGCACGTCAGAAGAGAGCCCAGACCAACTTGTCTGAAG--------
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582    172321 406 +   484378 ----TCA----CTCACCTTGAACAAtgctttcttctctttcacttCCTTTTCCGTTGACTCTCTGTTCACCACAGGACTGTTTCGAACACTTCCTTCTCT-----CGATAGATGACACGTACTCAAAGGTTCAGTCCCATCAGATAGCACAACGCCAGTTCCGGTACATGTTAGTAAAGCTACTCCTG--------------AAATTAATTCTTTT-ATGGTGTCATG-GAA----CACAAGAAATTTTACCATCATTCACAGTAATTGATTCTGTGTATCCAACAATAAGGTTACAACCAATACTTCTCGCCTGTTGGAATATCTCCGCTCTCAATGCAACCCAATAGTTCCTTCTAACTGATTCTGGTTCCTCATCCTCATTGAGAACTTTTATAGAACGAGCGGTTAGTAACGATCCCAAGCCAATTTGTCTGCAA--------
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3286209 410 -  4147112 ----TCAAAATCTTACCTTGAACAGtgcttttctttctttgatttccttTTCAGTTGAGTCTCTGGTAATCACTGGACTGTTCCGAGCGCTTCCTTCT--------GATATGTGACAAGCAGCAAGCACTTCTGCTCCATCCGACTGGACAATAGCAGTTCCTGTGCATGTAAGTAGTGCCACTcct---------------aaattcttttttct-acatgGATGTGAAAA----CTTATCAAATTTTACCTTCGTTTACAGTGACCGATTCTGTGTATCCAACAATTAGATTACACCCAATACTCCTCGCTTGCTGGAAAAGCTCAGCTCTCAATGCCacccaataattttttcgaacagtttCAGGTTCTTCATCCTCGTTGAGGAGTTTGATTGAGCGGGAACTTAACAATGCTCCCAAACCGACTTGTctggaa-gtt----
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   358219 420 +   720316 aaaaata----aatactttaaacaacGCTTTTTTCTCCTTGATCTCTTTCTCACTCGAATCTCGCACGACTATCGGACTGCTCCTTGCACTTGTCTCATTTTGCACAGAATAA-----GCTGTTGGAGCATCCGAACCATCCGACATAACAACTGCAGTTCCGGTGCAAGTCAGTAAGGCAACACCTGCATGGATTTtcgtgaaactttattttcg------gGCAGA-AAA-------AATAGCATTTACCTTCATTAACAGTTACTGTCTCGGTGTAGGCAACAATCAGATTGCAGCCAACAGTTCTCGCTTGTTGAAAGATTTCAGCTCGAAGAGAGACCCAATATCCTCTTCTTACAGATTCCGGATCCTCATCTTCGTTCAAAACCTGTATGGACCTTGCAGTGAGCAGTGAGCCAAGACCAATTTGtctaaaa----aaat
i caeJap4.Scaffold18213 I 35 I 2259

a score=-1457.000000
s ce10.chrX              2571042 3 + 17718866 TTA------
s caeRem4.Crem_Contig15   137205 7 -  1794024 --AAATATA
i caeRem4.Crem_Contig15 C 0 I 32
s caeSp111.Scaffold582    172727 1 +   484378 --A------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3286619 3 -  4147112 tga------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   358639 2259 +   720316 I
e cb4.chrX              17319771 0 - 21540570 C

a score=-2242.000000
s ce10.chrX              2571045 35 + 17718866 AGCTGAGTTTACACGACAACGAAAACTTA--AAAAAA
s caeSp111.Scaffold582    172728 26 +   484378 AACTGACT-----------AGATGGGCTATTAAGCCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3286622 24 -  4147112 aatttttt-----------cagaagttca--aagttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   358639 2259 +   720316 I
e cb4.chrX              17319771  0 - 21540570 C
e caeRem4.Crem_Contig15   137212 32 -  1794024 I

a score=-1748.000000
s ce10.chrX              2571080 3 + 17718866 -AAC
s caeSp111.Scaffold582    172754 3 +   484378 -TTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3286646 3 -  4147112 -ttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   360898 3 +   720316 AAT-
i caeJap4.Scaffold18213 I 2259 C 0
e cb4.chrX              17319771 0 - 21540570 C
e caeRem4.Crem_Contig15   137212 32 -  1794024 I

a score=198932.000000
s ce10.chrX              2571083 408 + 17718866 T--ACCTTTCTCCGGGTAACTTGTCGATCGTAAAAATTGGTTTCGCTGGTTTTCCATACCGCAGTGGTACACAACTTTCGTGAACTATTTTTGCACAGGTTCCAATCAACCGGCATGTGAGTAGATCAGATGCCGAACCCTCCATGTCTACATACTCTTGAAGTCTG-----AAC-----GTATTTTATTCCAAGAAATCACAACAGAAAAAAA----------------ACTTACCCAAATATTGCATTACCACCCATTTTGTAAGCTTTTTGAGCTATTCCCATGATGGAATCTCTCATTGTGACGCGAATCGCATTTTGTCTGGCTTCGTTGGTAGCGCGAGGTGTGCGAATTCTAAAACA-----------------------------------AAACAATTGAA-------TTTGAAAGTACTTATAGAGTTCT--CACTTGTCAAGCCATTCGTAGTCCGGGTCTTTCTCACA
s cb4.chrX              17319771 405 - 21540570 -------CTCCATGGGTAACTTGTCTATCGTCAGAATTGGCTTGATTGGTCTCCCATATGGTGGAGGTTGGAAGTTGTCATGCACCACTTTTATGCAAGTTCCGATCAGTCGGCACGTCAGCAAATCAGATGCGGACCCTTCCATATCCACTGACTCCAGAAGTCTG-----AAA-----TCAATTTAGTcc-gtaattttcagaattccagaaa-----------ggtTTTTTACCCTATAATAGCGTTTCCTCCCATTTTATAGGCTTTCAGTGCAAGTCCCATTATGGCATCGCGCATCGTGACTCGAATTGCACTCTGACGGGCTTCATTAGTGGCTCGAGGTGtacgaattctgaaa-------------------------------------tttcattttat-------ttctaTATCTCCA--AGGGTTCGCTTACTTGTCCAGCCACTCATAATCCGGATCCTTCTCACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   137244 413 -  1794024 T--ACCTCTCTGCTGGTAACTTGTCAATTGTCAAAATAGGTTTAATCGGTTTCCCATATGGCGCTGGTTGAAAGTTGCCATGAACTACTTTCACGCATGTTCCAATCACTCGGCAAGTGAGTAAATCTGATGCGGACCCTTCCATATCTACAGACTCGTGCAccctg-----aaaaagtgaaaagctaGTCA-ATAGCCGATAGCATCTCAA-----------------TTATTACCCAATAATTGCATTTCCTCCCATTTTGTACGCTTTTTGTGCAATTCCCATCATTGCATCTCGCATAGTGACTCGAATAGCATTTTGTCTTGCTTCGTTTGTAGCTCGAGGTGTTCGAATTCTGTAAAGT----------------------------------CTTCGGTTCGCTGGCAGATTTTATAGTTCta------ttca--tacttgtcaagccATTCGTAGTCCGGATCTTTTTCGCA
i caeRem4.Crem_Contig15 I 32 C 0
s caeSp111.Scaffold582    172757 413 +   484378 T--ACCTCTCCATTGGCAGCTTGTCGATTGTGAGGATGGGTTTCACAGGCTTTCCATATGGTATAACAGCAGTTGTCTCATGAAGAACTTTTATGCACGTTCCAATTACTCGACAAGTCAATAGATCCGATGCTGATCCTTCCATATCGACGGATTCTAATAATCTGAAATGAAA-----GCCACCTGTATA-GCTGCTTTTGACAACAGAA------------------ACTCACCCAACAATCACGTTTCCACCCATTTTGTATGCTTTCATGGCTATTCCCATGATTGCATCTCGCATTGTTACTCGGATAGCACTTTGTCTGGCTTCATTTGTTGCTCGTGGTGTACGGattctgttgaaaaa----------------------aaagat----tagcCTGTCTT-------TCTTAAACTAATA------AACA--TACTTGTCCAGCCATTCATAATCGGGATCTTTCTCACA
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3286649 412 -  4147112 taaaCCTCTCCGCAGGTAATTTGTCAATTGTCAAAATAGGTTTCTGTGGCTTTCCAAACGGCAATGGAGGAACCAAATCATGAAGAACCTTTACGCAAGTACCTATCACTCGACAGGTCAATAAGTCTGAAGCAGATCCTTCCATATCAACATATTCCAGTAATCTG---TAAAA-----ACCAACTGTTCATAAAACTTTCGATTGTCTCA------------------AATTACCCAACAATAGCATTGCCACCCATTTGATATGCCTTCATGGCTAATCCCATAATAGCATCTCTCATTGTCACTCTAATTGCATTTTGTCGGGCTTCATTTGTAGCTCGAGGTGTTCGAATTCTGACAAAAGA----------------------TAATA-----TAATATGTAGC-------TGCCAGGAAAATA------GTAT--TACTTGTCAAGCCATTCATAATCCGGATCTTTTTCACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   360901 446 +   720316 --CACCTTTCTTGTGGAATCTTTTCTATTgtaaaaattggttttgatGGTTTTCCAAAAGGCAAGGGTGTCAAAGTATCGGGCACTGCTTTTATACAAGTTCCTATGACGCGACATGTGAGAAGATCCGATGCCGATCCTTCCATATCCACATATTCTTGgattctg-----aaa-----acaaaa-------aaaaccctcaaaataatcaaaattcCACCATTTGTTTTCATACCCCAGGATGACATTTCCACCCATTTTGTGTGCTTTGTGAGCTATTCCCATCATGGCGTCTCTCATCGTCATGCGAATCGCATTTTGACGGGCTTCATTTGTCGCTCGAGGTTTACGAATTCTGAGAGAAAAACAACGGGGTTtagaatgaatgaaaaattgaaaatgaaatgGG-------TGTCAAGGAGCAA------ACCG--AACCTATCGAGCCATTCATAATCCGGGTCCTTTTCACA
i caeJap4.Scaffold18213 C 0 C 0

a score=-1150.000000
s ce10.chrX              2571491 2 + 17718866 AC-
s cb4.chrX              17320176 2 - 21540570 TC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   137657 2 -  1794024 TC-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3287061 2 -  4147112 AC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   361347 2 +   720316 -CC
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    173170 2 +   484378 I

a score=25933.000000
s ce10.chrX              2571493 63 + 17718866 GAATATGGTCAACTAAACCAAAAATGTCGGAAATTCGCAAGCCCGTCGGAATTGAAGTTGCTG
s cb4.chrX              17320178 63 - 21540570 GGATGTGATCCACCAGGCCATAAACGtcggagattttgaagtttgtggGAACAGTGTTAGCTA
i cb4.chrX              C 0 I 101
s caeRem4.Crem_Contig15   137659 63 -  1794024 GAATGTTATCAACCAATCCAAAAATATCCGATACTCGAAGACATGTCGGAACGAAACTCGCTG
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    173172 63 +   484378 GTATATGGTCAACTAATCCAAAGATATCTGAGACTCGCAGACTGGATGGAATGTAATTAGCTG
i caeSp111.Scaffold582  I 2 I 13
s caePb3.Scfld02_0       3287063 47 -  4147112 GAATATGGTCGACAAGGCCAAAGATATCAGATACTCGCAATGTCGAA----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   361349 63 +   720316 GAATGTTATCCACCAGACCGAAGATTTCGGCGATTCGAAAGTTGCCAGGCACAGAAGTGGctg
i caeJap4.Scaffold18213 C 0 C 0

a score=-152.000000
s ce10.chrX              2571556 28 + 17718866 AAAACTGACGAGTATTATTAATTATTAT
s caeJap4.Scaffold18213   361412 10 +   720316 aaa------------------ttattgt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3287110  0 -  4147112 C
e cb4.chrX              17320241 101 - 21540570 I
e caeSp111.Scaffold582    173235 13 +   484378 I
e caeRem4.Crem_Contig15   137722  9 -  1794024 I

a score=-4462.000000
s ce10.chrX              2571584 80 + 17718866 AATACGTTTTTGGTATAACATGTAATATCTATAAATAACTGAATAGTTTAAAGGAGAGGTAACCAATCTGCTTTTTGTAA
s caeRem4.Crem_Contig15   137731 35 -  1794024 ---ACTTTTTCGATGGGAAATG---------------------AGGTTCAAGG---------------------TTGGAA
i caeRem4.Crem_Contig15 I 9 C 0
s caePb3.Scfld02_0       3287110 13 -  4147112 ----------------GGTATG---------------------aagtttg------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   361422  0 +   720316 C
e cb4.chrX              17320241 101 - 21540570 I
e caeSp111.Scaffold582    173235 13 +   484378 I

a score=-7277.000000
s ce10.chrX              2571664 65 + 17718866 ACTTAAAATGACCCTAGTAACAATTTTTAGTATTACTGGAACGCAATTTGATGTTCAATTGAAAC
s cb4.chrX              17320342 47 - 21540570 ACttgaaa----------actctttttttctgtctctGAAT--------GCTGTTGAATTGGTAG
i cb4.chrX              I 101 C 0
s caeRem4.Crem_Contig15   137766 30 -  1794024 ATTCAAAG----------GTTTATCGGAAGTGTCTCCA-------------------------AG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3287123 29 -  4147112 --ctgaaa----------atgaactCATGTTGTATTGACAC------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   361422  0 +   720316 C
e caeSp111.Scaffold582    173235 13 +   484378 I

a score=-925.000000
s ce10.chrX              2571729 15 + 17718866 GTCTAATCTTGTCAA
s cb4.chrX              17320389 14 - 21540570 GT-TATTGTTTTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   137796  9 -  1794024 GA-TA-----TTCTG
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3287152  0 -  4147112 C
e caeJap4.Scaffold18213   361422  0 +   720316 C
e caeSp111.Scaffold582    173235 13 +   484378 I

a score=-8144.000000
s ce10.chrX              2571744 44 + 17718866 -TTTTTTTGTGCTGCAGCAACGTTTTTGAGTGTTTAAAATAGCA--C
s cb4.chrX              17320403 38 - 21540570 -ACTCTTGATG-Taaagcaa-------aagcctaaaaaatgacaagc
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig15   137805 19 -  1794024 -GCGTTC---------------------------AACACTGACGTTC
i caeRem4.Crem_Contig15 C 0 I 55
s caeJap4.Scaffold18213   361422  7 +   720316 ttttttt----------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3287152  0 -  4147112 C
e caeSp111.Scaffold582    173235 13 +   484378 I

a score=0.000000
s ce10.chrX              2571788 15 + 17718866 AAAAAATGTATCTAT
e caePb3.Scfld02_0       3287152  0 -  4147112 C
e caeJap4.Scaffold18213   361429  0 +   720316 C
e cb4.chrX              17320441 15 - 21540570 I
e caeSp111.Scaffold582    173235 13 +   484378 I
e caeRem4.Crem_Contig15   137824 55 -  1794024 I

a score=-6149.000000
s ce10.chrX              2571803 41 + 17718866 TTGTTCCTCCAAATCTTCTTTATTTTCTACATTTTTTTTTG--
s cb4.chrX              17320456 33 - 21540570 CCGATGCAGAAAggcgaattt--------catttttcgttg--
i cb4.chrX              I 15 C 0
s caeSp111.Scaffold582    173248 11 +   484378 -----------TGGC-------------------TCCGTTA--
i caeSp111.Scaffold582  I 13 C 0
s caeJap4.Scaffold18213   361429 28 +   720316 -------------tcttctttgatTCC--TGTTTTCTAGTATG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3287152  0 -  4147112 C
e caeRem4.Crem_Contig15   137824 55 -  1794024 I

a score=-16220.000000
s ce10.chrX              2571844 49 + 17718866 -GGAAAAAAATCTTTTTTCCATTCTTTTGGTATAAGGAAAAAAACTTTTC
s cb4.chrX              17320489 27 - 21540570 -------------------GGCTTCCTTTTCAAGCAGagccagatt----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   137879 32 -  1794024 --GCAAAAA-------CTTCGCCTCTTCTTCATGATGGTC-----T----
i caeRem4.Crem_Contig15 I 55 C 0
s caeSp111.Scaffold582    173259 10 +   484378 --------------------------CTGTTATGAG--------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   361457 28 +   720316 ATaaataaaatacataaattaataattt----------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3287152  0 -  4147112 C

a score=234163.000000
s ce10.chrX              2571893 612 + 17718866  
s cb4.chrX              17320516 462 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   137911 552 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    173269 611 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3287152 613 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   361485 490 +   720316  
i caeJap4.Scaffold18213 C 0 I 1155

a score=-5474.000000
s ce10.chrX              2572505 24 + 17718866 ATGTTTTCCAAATATCGAGCATAT
s cb4.chrX              17320978 10 - 21540570 --------------TATAcgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   138463 18 -  1794024 attttt------ccttgaagtttc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    173880 12 +   484378 ------------ATTGTAAACCAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3287765 24 -  4147112 GAATTCACATAGattgttgatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   361975 1155 +   720316 I

a score=75368.000000
s ce10.chrX              2572529 111 + 17718866 -AATTTA------ATATCAAA--------------CATACCTTGTTCATAACAGGGAGCGCTTTTGCGGAAATTACGCATATTTCCAGCCTCACCGGCAAACGTTCGTTGCACACAGGAATCAACATTTC-AC
s cb4.chrX              17320988 123 - 21540570 -cat---------atttcaaatcGAATACATTTGGCTCACCTTGTTCATAACCGGCAGAGATTTCGCAGAAAGCACACATATCTCGAGCCGGACCGGCAACCGCTCGTTGCACACCGGAATCAACATTTTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   138481 112 -  1794024 -aat---------atttcaaatcaA----------CTTACCTTGTTCATAACCGGTAAAGCTTTTGCGGATTGAACACATATCTCAAGCCTGACCGGCAAACGTTCGTTGCAAACCGgaatcaacatttt-ta
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    173892 120 +   484378 -TATTCAGCACAAATATTGAGTGT-----------TTTACTTTATTCATAACCGGCAAGGATTTTGCGGAAATCACGCATATCTCCAGCCGTACTGGCAGCCGTTCAGTGCAAATTGGAATCAACATTTT-GT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3287789 114 -  4147112 -tattt-------attttgaaccA-----------CTTACCTTGTTCATAACCGGCAAAGATTTTGCAGAATGCACACATATCTCTAGCCGGACAGGCAAACGCTCGTTGCAAACTGGTATTAGCATTTTCGt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   363130 115 +   720316 aaatta-------atatataAAAAA----------CTTACTTTATTCATAACAGGCAAGGATTTTGCCGAAACCACGCATATTTCGAGACGAACCGGTAATCGTTCATTGCAGATTGGGATCAACATTTT-GC
i caeJap4.Scaffold18213 I 1155 I 1869

a score=7246.000000
s ce10.chrX              2572640 14 + 17718866 TTGCATCTGGAAAT
s cb4.chrX              17321111 14 - 21540570 GTGCATctggaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   138593 14 -  1794024 gaacatctgaaaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    174012 14 +   484378 gtacatctgaaaat
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3287903 13 -  4147112 gt-catctgaatat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   363245 1869 +   720316 I

a score=-3590.000000
s ce10.chrX              2572654 5 + 17718866 GTAGA----
s cb4.chrX              17321125 5 - 21540570 ----ataaa
i cb4.chrX              C 0 I 1181
s caeRem4.Crem_Contig15   138607 2 -  1794024 ----ac---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3287916 4 -  4147112 --ctgc---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   363245 1869 +   720316 I
e caeSp111.Scaffold582    174026 37 +   484378 I

a score=-3120.000000
s ce10.chrX              2572659 26 + 17718866 TAATTATTCTTCGTATTTTC----------AGCTTA----
s caeRem4.Crem_Contig15   138609 26 -  1794024 -----------tgaatttttatagtgaagaaatttcg---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3287920 26 -  4147112 -------------gATTTAT-TTGTgattaattttattca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   363245 1869 +   720316 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174026 37 +   484378 I

a score=-4579.000000
s ce10.chrX              2572685 101 + 17718866 --CCAAA---CACAAATAATCA----------------TCGaata--ttattaatata---------------taaaatGGAAGATATCCTGGGGGACTAGTTTCGGCTACC--CTCGGCCGCCGCGCTGGTGTGGCCACA
s caeRem4.Crem_Contig15   138635 121 -  1794024 --aaaaa---tataaagagCCAGCGTGGCTAGAAAGCTTTAACTA---TATCAAAACA-------TCAATGAAAACAGTGGACTA-GTTTTCAGGGACTAGGTTTCTCTTTCTGCTCGGCCAGTGC-CA-ACACTCGCT--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    174063 116 +   484378 tcaaaaa---tcaagagTAACAgcttaaaattaaa---ttagcTA--TTGGTAAAATT---------------TCCGATGGACTA-GTTTGCGCGgactaattttttctg-cgTGTCGGCCAGCGCACGTACGTGGCCTCT
i caeSp111.Scaffold582  I 37 C 0
s caePb3.Scfld02_0       3287946 122 -  4147112 --aaaaatattataaagCAACG----------AAG---TTAGTCAATTTaataaaactaataaaaaaaagaaacgtaaTGGTGTA-GTTTCCGTGGCCGAACTTTCTCTATTGTGTCGGCCAGCGCGCG-AAGCGGTTT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   363245 1869 +   720316 I
e cb4.chrX              17321130 1181 - 21540570 I

a score=5364.000000
s ce10.chrX              2572786 137 + 17718866 -----ATTCGCTTGGCAATCGTTGTCCGAAG-AGAGCTGTGGCA-CCCTT-TAAAAATAGTGCATGCTTACGAGAGGA--TGAGAGAGACCAGGCAATGGGT---GTATGTGGCTGCGTCGCGGCTTTGTT-GCGTGCGTTCACCTATTGC
s caeRem4.Crem_Contig15   138756 119 -  1794024 -------------GCCATATGTCTAATGAAA-AAAGCTATG-CA-CCAG--GAAAAATAGTGTAGACGttggagagaa----agagggaaTAGG----GTGT---GTTTGCGGTCGC---GACGCGTTTGTGGTGTATGTTCGCCATTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    174179 139 +   484378 -----GCGTGCCAGGCAGTCGTTGTTTAAACGCGAGCAGTGGCAtccaacagaaaaatagctttGCCAATGATGAGAC---GCAAAAGAAACGG----GTGTGTGGTGTGCGACTGCGCTGAGAATTCGTCAGCGTGtgttcatttctctc
i caeSp111.Scaffold582  C 0 I 71
s caePb3.Scfld02_0       3288068 127 -  4147112 -------------GGCAGTCGTTGTACGAAAGAGAGCCGTGCTA-ACGGCCGGAAAATAGTGTATTCACCGGAGAGAG---TAGAAAGAGAAGG----AGGT---GTGTGTGGTTGAATAGAAGATTCGGTTGCGTGTGTTCGATTCCCCT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   365114 141 +   720316 ATTCGCTCTACTATGCTAACGTCTTTTAAAA-AGAGCTGTCGCACCCTGCGGAAAGAGAATGTGGACGATCGAGAGTGCGCCTGACAAGAGAGC----GGGT---GCGTGTGGCTGCGGCGCGG-TTCGAT-GCGTGCGTGGCCCATTTGC
i caeJap4.Scaffold18213 I 1869 C 0
e cb4.chrX              17321130 1181 - 21540570 I

a score=-3744.000000
s ce10.chrX              2572923 28 + 17718866 AGGAAAT-----CTGGACATGCTTTTTTCACCT-------
s caeRem4.Crem_Contig15   138875 17 -  1794024 ----------------ATTTGCTTACGTTTTGA-------
i caeRem4.Crem_Contig15 C 0 I 5
s caePb3.Scfld02_0       3288202 24 -  4147112 AGAGGAC---------TTTTGCCTTCTCCTCAT-------
i caePb3.Scfld02_0      I 7 I 95
s caeJap4.Scaffold18213   365255 40 +   720316 AGGGTGCACCCacacatttttccttttttttttttggccc
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174318 71 +   484378 I

a score=-6705.000000
s ce10.chrX              2572951  68 + 17718866 -----------------AAAATATT-------------------------TCATATCACTGATATCTTGCAAAAATCACCACAAAA-------ATATTTATTTCAGTTGATTGTGAA
s caeRem4.Crem_Contig15   138897  71 -  1794024 -----------------atagtttt-------------------------ttttactaaaaaaa----ggaaaaaacaatgaaaaacaaCAGTGTATACAGTACAGTAAATTTCGGC
i caeRem4.Crem_Contig15 I 5 C 0
s caeJap4.Scaffold18213   365295 102 +   720316 aACTCGGTCCGTTCCCACCAATTTTCCCGTTCACCGTTCCCCGCTTCATGTTTTATCTTTTATTCGTCG------TCACTCCAGAA--------TGCCAATTTCCTTCGTTATCAC-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3288226  95 -  4147112 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174318  71 +   484378 I

a score=-8607.000000
s ce10.chrX              2573019 62 + 17718866 -CATATTC-------------TTTTAGCTAGTGCCTACAATTAAAAAA------CGTGTTCATCCTAAATATTCTTTTTTTA
s caeRem4.Crem_Contig15   138968 56 -  1794024 -AATGATT-------------CTTGAGTTTTGTTTCGTGACT------------CTCTTCCGTTTTCTACAAAATATTGACA
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    174389 46 +   484378 -CGTCTCT-------------CTTTAATTCTTCTTCA----------------------CCATTAGTAACATCTCATTCATT
i caeSp111.Scaffold582  I 71 I 5
s caeJap4.Scaffold18213   365397 77 +   720316 TAATTTCCTTTGTTTTCCGcacttttactttttttcggCATCCAGTTACACGGTCTTCTCAATTTTTactattattg-----
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3288226 95 -  4147112 I
e cb4.chrX              17321130 1181 - 21540570 I

a score=-1731.000000
s ce10.chrX              2573081 228 + 17718866 -ATTTC-----AGGTAATGGAAAGTGAGCC---ATCACCTCAAAGCGAGATAGATGCTCAACACCAGGCCAATTTGGCACTGCTTCAAGCACTGGACCCGGTGGCTTTCAAAAAGTTTGACTTTGAATGCGACACCATCC-----------------TACAGGTACTATAATTA-----AATTATTTTGAAAA-TAGCATTCAAATTAATAAATATTCGCAGAGACTACCCACTGGGATGAAGCCAGAAGACACTATCGA
s caeRem4.Crem_Contig15   139041 217 -  1794024 -GCTCCTGGAAAGATGA---AGTGGGGACC---AGATCCAGACGCTGAACTTGATTTGCGAAtcgaaaagaacaaaaaaattctggaagcACTGAAACCTGTCGCGTTTGAACGATTGGTTTTTGAGCGTGATACTATTC-----------------TTCAGGtgttttctttattattttctattttgaaag-------------------aaaagttcAGAGGCTTCCCGGTGGTGAGTTACCAGATGATGATGTTGA
i caeRem4.Crem_Contig15 I 17 I 327
s caeSp111.Scaffold582    174440 174 +   484378 -ATTTC-----AGATAA---TGGTTGAACCGTTATCACTGGAAGCTGAGATTGATGCTCAGAACAAGGCGAACCTGGAGTTGCTTGAAATCATCGAATCCACGGCATTCCagaagtttcattttgaatcagaCAGTATTC-----------------------------------------------------------------------------TGCATAGACTTCCAGAGGGAATGCAACCAGGCGACACCATTGA
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3288321 227 -  4147112 -GTTTT-----ATGCAA---AAAAGGGACA--TGTCTCTTCACAATAAAATCGAGCGGTTGAACGAGCATAGTTTGGCCGTGCTCAAGAGAATTAAATCGAAACCGTTTGGGAAATTCGACTTCCACTCTGACGACATACTCATGgtaaataaaaattacagCTGGATCTTTCA--ACGAGTTACTTTGATAT--------------------TCATTTCAGCGATTGCCAGAGGGAATGAAACCAAATGACACTATCGA
i caePb3.Scfld02_0      I 95 C 0
s caeJap4.Scaffold18213   365474 191 +   720316 attttc-----aggTAA---------------------TGGACGCCGCCATCAATCAGTA---------------TGCGATGATGCGCGGGTTAAACCCTGTCGCGTTTAtgaattatatttttaaacaGGACAGTATTT-----------------TGCAGGTACGA-----------AAATGCTTTGCAAAATTTTatacataaaaataaaaaatttcagagaatCCCAGAAGGAATGCAACCAGGGGACACTCGGGA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17321130 1181 - 21540570 I

a score=6622.000000
s ce10.chrX              2573309  79 + 17718866 ATCTCACAAGGAAAGATGTGTAGAGGAAATGACTGAGACTCATCAGTT-----------------------TGAAACGATGGAACTGGCGAATGT-----AAGGTTT
s caeSp111.Scaffold582    174614  79 +   484378 ATCTCATAAGGCAAAATGTCAGGAGAGTATGACGGAAACTCATCAATT-----------------------CGAGACGAGAGAGTTTGCTGAGGT-----ACCGTTg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3288548 107 -  4147112 AACCCATAAATCGAAATGCCAAATCAAAATGACAGAGAAACATCTTTTTCCAACATACGCCGCAGCCGAGGTAAGCCTAGAAACTTGTCAGAGCTTCAAAATAGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   365665  79 +   720316 ATTCCATGTGCTCCGATACCTGAATGAAAATACCGAAACACATCAGTT-----------------------TGAGACATTGGAACTTGCAGAGGT-----AAGATTT
i caeJap4.Scaffold18213 C 0 I 5716
e cb4.chrX              17321130 1181 - 21540570 I
e caeRem4.Crem_Contig15   139258 327 -  1794024 I

a score=-571.000000
s ce10.chrX              2573388 21 + 17718866 CAAAAAAAATTCTCAATATAT---
s caeSp111.Scaffold582    174693 21 +   484378 t---taaaataataaatactATAT
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3288655 17 -  4147112 ----TATAATTTTCAACACAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   365744 5716 +   720316 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeRem4.Crem_Contig15   139258 327 -  1794024 I

a score=378.000000
s ce10.chrX              2573409 16 + 17718866 GCCATTCTTACCAGCG
s caePb3.Scfld02_0       3288672 16 -  4147112 GTACTTTTCACTACCG
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18213   365744 5716 +   720316 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174714 14 +   484378 I
e caeRem4.Crem_Contig15   139258 327 -  1794024 I

a score=0.000000
s ce10.chrX              2573425 947 + 17718866  
e caePb3.Scfld02_0       3288688   7 -  4147112 I
e caeJap4.Scaffold18213   365744 5716 +   720316 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174714  14 +   484378 I
e caeRem4.Crem_Contig15   139258 327 -  1794024 I

a score=256.000000
s ce10.chrX              2574372 10 + 17718866 ATGATTTACG
s caeJap4.Scaffold18213   371460 10 +   720316 attattcaaa
i caeJap4.Scaffold18213 I 5716 C 0
e caePb3.Scfld02_0       3288688  7 -  4147112 I
e cb4.chrX              17321130 1181 - 21540570 I
e caeSp111.Scaffold582    174714 14 +   484378 I
e caeRem4.Crem_Contig15   139258 327 -  1794024 I

a score=-1107.000000
s ce10.chrX              2574382 1 + 17718866 -T
s cb4.chrX              17322311 1 - 21540570 -t
i cb4.chrX              I 1181 C 0
s caeRem4.Crem_Contig15   139585 1 -  1794024 -t
i caeRem4.Crem_Contig15 I 327 C 0
s caeJap4.Scaffold18213   371470 1 +   720316 a-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3288688 7 -  4147112 I
e caeSp111.Scaffold582    174714 14 +   484378 I

a score=-1294.000000
s ce10.chrX              2574383 1 + 17718866 -T
s cb4.chrX              17322312 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   139586 1 -  1794024 -t
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3288695 1 -  4147112 -T
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213   371471 1 +   720316 a-
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    174714 14 +   484378 I

a score=-7955.000000
s ce10.chrX              2574384 166 + 17718866 TTCAGAAGTTCATAAAACACCGCTTCGCCGATTTTCGTTTGGAAGAAGAAAACGCAGAACACAA-ACTCTACATC-----TGCCCACATGGACAACATGAG------CAATGTGTCGGGTATGCAAAGGT---------AT-ACGACATC-ACAACGAAAG-ACGATTGTTTTTAATCAAACATCTTCAG
s cb4.chrX              17322313 153 - 21540570 tctagagatTCGCCAAAATCCGCTGTCCCGGCTTCAAATTAGATACATCAAATGAGGAAGACAAGGACTGCTGCTTTAGATGCCCACTTGGAA-----GAG------AA---------TTTTGCACTGCTTATTACAGGGT------AAC-----CCAAAA-ACCGTGCTTCT-----TCGTAAACTGAA
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   139587 163 -  1794024 taaagaaattcgTCAAACTCCGATTTCCGGCTTACAAACT-----TTTGAACTGTAGAACACCC-GATATCTACTTT---TGCCGTCATAAGAAGCATGAG------AAATGCTTTGGATTTGCGAGGGTTAGTGATGGAT-AC---AAT-----CGAAAATATCTTACTGTTAG---ATGTCATTTAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    174728 159 +   484378 TTCAGAAGTTCATCAAAATTCGTTTCGCTGGTTACAAAGTGAAGGAGGAAACGACGGAACATAG-AATTTATGTC-----TGTCCACACGGACGCCCTGAG------CGATGCACTGGATATGTTAAGGT------AGTAT-ACATTATC---TATTATGG-ACCTTCAAGTT--------TAATTTCAG
i caeSp111.Scaffold582  I 14 C 0
s caePb3.Scfld02_0       3288696 162 -  4147112 TCCAGAACTTCATCAAAGTCCGTTTCGGCGACTACAAACTGGAAGAAGAAACTAAGAATCACAA-GCTCTATAAC-----TGCCCACATG---GCCCGGAAGACGACAAATGCActggatttttgaaggt------tAGATAACACGAACAGacacgaaaa-acttttcagt------------ttttag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   371472 158 +   720316 tccaGAAATTTATCGATACTCGCTGCCGTGAATTTATGCTTCTCCACGAAACAAGCGACTTCAA-ATACTACGTG-----TGCCCACATGGACAGAAGGAA------AATTGCGTTGCTTATGCCAAGGTAGTCCCATTATCACGAAAGT---CACTAAAT-ATAATT----------------TCTTAG
i caeJap4.Scaffold18213 C 0 C 0

a score=1987.000000
s ce10.chrX              2574550 20 + 17718866 CTATTCCTCAATCTTGGTGT
s caeRem4.Crem_Contig15   139750 20 -  1794024 ATACACAAAAATCATGGTTT
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    174887 20 +   484378 CTTTTCCTCAATCTTGCTGG
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3288858 19 -  4147112 ttgTATCTCGGTCTTGA-GC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   371630 20 +   720316 TTGTTCCTTGGACTTGGCGT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17322466 35 - 21540570 I

a score=50515.000000
s ce10.chrX              2574570 289 + 17718866 TAACATC--GTTCGTGTTTGTTTTGGGCACTACGGGCATGAGTCAACGATA--GGGCAGTACCGGTTCACTGGAATTCAATTCGCCACTATTCGATTATTCAGCGACTTTTACTGGAAAAAAGTGATTGGACCTGAATGGAATGTGCACAACATTGTGTACTGTTTCAAGCATTGGTATGATGATTCACATGCTCTTCACTATTTAAGTATATATGACCTGAGGTATAATCTCCGAATAACCAGATAAGAT---GTTTTA--ATGAAA------------ACTTTA--TTTCAGAGCAATCG-CTCTAGAATT
s cb4.chrX              17322501 282 - 21540570 TCACGTTCTCCAAGTCAGC-TTCTGC-CACTACGACCACGATCGGAAAGAA--GGTCAGCAGCGGTTCACGACACTTGAGTATGCTCTCATCCGGCTTTTCGTGgactttttttggaagacTGAAGTTTCTCCGGAATGGAATGCCCATAATATGGTTTACTGCTTCCGGCACTGGTTCAGTCTAGACCATCCATTGCGATACATGACCATCTATGATGTCAAGTAA-------GACGA----TTTCATAG---Gtaattgattgaaa------------attctCCATTTCAGAGCCATTG-GTCTGGAGAT
i cb4.chrX              I 35 I 6
s caeRem4.Crem_Contig15   139772 288 -  1794024 TCACGGT---CAGCTGTAC-TTATGCTTATCACGGCCATGAACCATCAGTT--GGACAATCTCGTTTTGATGGAATTCAATTTGCTTGCATTCGATTGTTCATTGGGCTATACTGGAAACACAACAGTGATATCAATTGGAACGTACATCACacaataaaatgtttcaaacacTGGTTCACTGAATCACATCCTCTACATTTTATTAGTACATACGACTTTAGGTAA-------GATTA------TCAtgt---taaact--ttaaaaactgtttcggTTATCTTTCATGTCAGAGCAATCG-CCGCAGAGCT
i caeRem4.Crem_Contig15 I 2 I 1623
s caeSp111.Scaffold582    174910 285 +   484378 TAATGTT--CTCCGTGCTCATTACGGCCATTACGGTCACGATCCAGCACTA--GGGCAGCCTCGTTTCACTGGAATCCAATTTGCTACCATCCGTCTCTACTGTGACTTCTACTGGAAGAATATTGTTGGCGTTGAATGGAATATTCACAATCTCGTGTATTGTTTCAAACAATGGTACGACGACACTCACACTCTGCATTACTTGAATTCTTATGACATAAGGTAA----Ctcaaacacatttttcagat---ttcatc--ATCACA------------ATTTGT--TTACAGGGCGATTG-CTGCAGAATT
i caeSp111.Scaffold582  I 3 I 4
s caePb3.Scfld02_0       3288880 280 -  4147112 CCatgat---tttgtgctc-ttttggTCATTACGGACATGAT--AGTAGTGTTGGACAGGCTCGCTTCACTGGCATCGAGTTTTCTATCGTTCGGTTGTACACCAACATTTACTGGAAGAGACAGTTCGACGATGATGCTAATGTTCGCaatatttggttcttcttcAAACATATTTTCGACGACGATCACATTCTCAACCATGTCAATGCTTATGATTTGAGGTAG-------AAACATGTCTGGAAAATACATAAatt--atctca------------attttt------agAGCAGTTGCCTTCGAAGTT
i caePb3.Scfld02_0      I 3 I 4
s caeJap4.Scaffold18213   371650 288 +   720316 CAACATT--GTTCGCGTGTGTTTTGGTCACTACGATCACGAT--ATCGGCCACGGACAGCCTCGTTTCACCACAATGCAGTTTGCCACACTACGTCTGTTCAGTGATTTTTACTGGAAGCGATCCCTTGGTGCGGAGTGGAATGTTCATAATATAGTTTATTGCTTTAAACACTGGTATCCATCAGACAACCCTTTGCACTTTTTGAGTATATACGATTTAAAGTGA----GCTCAAAAGGTTTTAAAgat--------t--gtgaaaaataattaacaAATTTCT------AGAGCTATAG-CCAGAGAAGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-4933.000000
s ce10.chrX              2574859 54 + 17718866 -----AGGCAAACCT-GATG-CAGTTCGTGTTCAACTTCCGAATGGAGTATACCATGCCGT
s cb4.chrX              17322789 48 - 21540570 -----ACTCGAGGTT-GCTC-AGATCGACATGCTG------TACGGAGTTTATCATTCGGA
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold582    175199 50 +   484378 -----AG----AGCT-GACG-CAGCAGACTTGAAACTAACTAACGGAGTGTATCATTCTGT
i caeSp111.Scaffold582  I 4 I 323
s caePb3.Scfld02_0       3289164 49 -  4147112 -----AGGAAAAACTGGATG-AGATCGAATTGAAA------GAAGGAGTCTTCCATGATCG
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   371938 54 +   720316 TCAAAGACCAGAGGC-GCTGTCCATCAACCTGCCA------AATGGGTGTTATCATGGAAC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=-798.000000
s ce10.chrX              2574913 18 + 17718866 TCGCATGACAACTGTGGA
s cb4.chrX              17322837 15 - 21540570 ---GCGCTCAACGGTGGA
i cb4.chrX              C 0 I 1492
s caePb3.Scfld02_0       3289213 18 -  4147112 ACGTAGTTCAACACTTGC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   371992 18 +   720316 AAAAATAATGACTGAGGA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    175249 323 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=301.000000
s ce10.chrX              2574931 10 + 17718866 AGACTTGAAC
s caePb3.Scfld02_0       3289234 10 -  4147112 AAACTTCAAC
i caePb3.Scfld02_0      I 3 I 2170
s caeJap4.Scaffold18213   372010  7 +   720316 AGAT---AGC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17322852 1492 - 21540570 I
e caeSp111.Scaffold582    175249 323 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=1350.000000
s ce10.chrX              2574941 280 + 17718866 CAATTCAC------GCATAGGACACCATCGAATCAATTTCAACCGTGCCATGCAGATGTTAACGAGCTTTCACTTGGTGCTTCAAGTCAGAAAGAGGAAGGCACCTCGGGGCCACCCCAAGTCCTAGATGAGGATGGGGAGCCATTCACCCCGACCCCGGAAAATGTGCGGCACGAAATTTCAG-AGAGCCAAGATGC-ACCGGGAAATGTTACACATGATTGGTTTTCAGAAGGAGCCAATTCTCAGCAGGTCACAACGATGTGGGTTAATATTCACAATGtaagct
s caeJap4.Scaffold18213   372017 253 +   720316 CATAGCACATATTTGTACAGAAATCCCGCAAATCACGTCGAAGCTTGCCATGGGGAAGGGAGTGCTGCTGCAGATCAGATTTACAGTCAGAATGGAGATACAACATTGACATCTGTACCATTATGCAATGAGGA------------------------GAAAGAAGCTC---------CTTCAGAAGAGCCA--GTGCAACCTAGCGAAACTTCGCAAGAGTGGTATACACAAGGTAACAACCCACAATATGCTTCCGCCAACTGGGTCAACATTCACAATGTAAGTT
i caeJap4.Scaffold18213 C 0 I 25
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeSp111.Scaffold582    175249 323 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=0.000000
s ce10.chrX              2575221 553 + 17718866  
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e caeJap4.Scaffold18213   372270  25 +   720316 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeSp111.Scaffold582    175249 323 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=113.000000
s ce10.chrX              2575774 11 + 17718866 AAATAGACA-AT
s caeJap4.Scaffold18213   372295 12 +   720316 aaataaatacaa
i caeJap4.Scaffold18213 I 25 C 0
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeSp111.Scaffold582    175249 323 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=11346.000000
s ce10.chrX              2575785 139 + 17718866 TTTCAGCATGCAACTGAGCTGAAAAACATTGCTTTCCTGAAGATGTTAACTCCGAACTGCA--CAGAA-----GAAGTGTTCAATGATGCTCAGCAAATATTTGAAATGCTCAATCAAGCAGCCGAGATTGCACATAAAATGAATG
s caeSp111.Scaffold582    175572 145 +   484378 tttcagtacGCCACCGAGTTGAAGAACATCACATACATGAAAATCATCACTCC-AACTTCAAGCATGACTACTGAAAACTACAACGATGCCCAACagatatttgaaatgttGAATCAAGCAGCTGAAATCGCACAGAAGATGATTT
i caeSp111.Scaffold582  I 323 C 0
s caeJap4.Scaffold18213   372307 139 +   720316 tttcaGTTCTCTACAGAGCTCATGAGCTTTGCGTTCCAGAAGATGTTGGCACCACAGTGTA--CTGAG-----CAAGCTTttaatgacgcttcaaagatTTTCGAGCTTCTCACTCAAGCTGTTGATCTTGCTCGGAAAATCAACG
i caeJap4.Scaffold18213 C 0 I 10995
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=3623.000000
s ce10.chrX              2575924 488 + 17718866  
s caeSp111.Scaffold582    175717 486 +   484378  
i caeSp111.Scaffold582  C 0 I 897
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e caeJap4.Scaffold18213   372446 10995 +   720316 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=0.000000
s ce10.chrX              2576412 1274 + 17718866  
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e caeJap4.Scaffold18213   372446 10995 +   720316 I
e cb4.chrX              17322852 1492 - 21540570 I
e caeSp111.Scaffold582    176203  897 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=100.000000
s ce10.chrX              2577686 1 + 17718866 C
s cb4.chrX              17324344 1 - 21540570 C
i cb4.chrX              I 1492 C 0
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e caeJap4.Scaffold18213   372446 10995 +   720316 I
e caeSp111.Scaffold582    176203 897 +   484378 I
e caeRem4.Crem_Contig15   140060 1623 -  1794024 I

a score=-76.000000
s ce10.chrX              2577687 56 + 17718866 AAAATATTCAAATGCATATAAA-------ACACCACGTTTGAGTTTTTTCTCACAAAGTTACC
s cb4.chrX              17324345 62 - 21540570 AAAACATTGCTTGGTGTATAAAACGAAGTGGATCGAGATTGGATTTTGG-TATTAACAGCAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   141683 54 -  1794024 AAAACATCCGAGAACATATAAA---AAGGGTTTCGCGTTTTGCTCTCGG------ACGGCGTC
i caeRem4.Crem_Contig15 I 1623 C 0
e caePb3.Scfld02_0       3289244 2170 -  4147112 I
e caeJap4.Scaffold18213   372446 10995 +   720316 I
e caeSp111.Scaffold582    176203 897 +   484378 I

a score=2370.000000
s ce10.chrX              2577743 8 + 17718866 ATGAAAAC
s cb4.chrX              17324407 8 - 21540570 ATGCGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   141737 8 -  1794024 ATGAAGGT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3291414 8 -  4147112 ATGAAGAT
i caePb3.Scfld02_0      I 2170 C 0
e caeJap4.Scaffold18213   372446 10995 +   720316 I
e caeSp111.Scaffold582    176203 897 +   484378 I

a score=7151.000000
s ce10.chrX              2577751 85 + 17718866 TTTGTTATTGCTATTTCTTTTCACAG---CCTCTGTGGCAGCAATTCC---TTTCAGATCAACAACTGTTGTTGCGAGGGTGATACTTCGT
s cb4.chrX              17324415 91 - 21540570 TCTGCTGCTACTGTTGATTTTCATTGTCGGGCTCGTGGCCAGCACCACTCGCTTTTCCGCCACACTTGTCTATGCTCGAGTCACATTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   141745 88 -  1794024 TTTATTGTTACTGT---TTTGTGTTTTATCCCTTGTGGAATCAATCTCCCGTATTAGAACAACTGTTGTAAATGCACAAATTACCCTTCGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    177100 88 +   484378 ---TTTACTGTTGGCATTGCTCACTGTGAGCTTTGTGGCTTCGACTACGCGTTTCGATTCGACTACGGCTTTTGTCAAAGTTGTTCTTCGA
i caeSp111.Scaffold582  I 897 C 0
s caePb3.Scfld02_0       3291422 88 -  4147112 TCTCTTGCTTCTTTTTGTGCTTGCTG---GCTTTGTGGCTGGAACCACTCGGTTCGAATCTATTAGAGTCAATGCACGGGTCATTCTTCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   372446 10995 +   720316 I

a score=36998.000000
s ce10.chrX              2577836 63 + 17718866 TGTAAGCATCCAAAAGATCCATCTGCAAAAGTGTTCCTGATGGAAAAGGATTTTGGAGATCGT
s cb4.chrX              17324506 63 - 21540570 TGTAGAGCTCCAAGGGTTGCTGAGGCTAAGGTGTTCTTGATGGAGAGCGATTTCCAGGATAGT
i cb4.chrX              C 0 I 679
s caeRem4.Crem_Contig15   141833 63 -  1794024 TGCAAAGCTCCGAAGAGCCCAGATGCCACAGTCTTCCTGATGGAAAGAGATTTTGATGATAGT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    177188 63 +   484378 TGCAAGAATCCAAAGGACCCAAACGTCAAAGTTTTCTTGATGGATAGCGATTTCATTGAAAGT
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3291510 63 -  4147112 TGCAAGAGTCCACGAGTCCCAACAGCTAGAGTGTTTTTGATGGAGAGTGACTTCTCCAACTGT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   383441 63 +   720316 TGTGAAAAGCCTAAGGATCCACACGCTAGAGTTTTCTTAATGGAAAGGGATTTTGGTGACAGT
i caeJap4.Scaffold18213 I 10995 C 0

a score=-460.000000
s ce10.chrX              2577899 1 + 17718866 -T
s caeJap4.Scaffold18213   383504 1 +   720316 A-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3291573 1 -  4147112 I
e cb4.chrX              17324569 679 - 21540570 I
e caeSp111.Scaffold582    177251 1 +   484378 I
e caeRem4.Crem_Contig15   141896 1 -  1794024 I

a score=-1544.000000
s ce10.chrX              2577900 2 + 17718866 AG-
s cb4.chrX              17325248 2 - 21540570 AA-
i cb4.chrX              I 679 C 0
s caeRem4.Crem_Contig15   141897 1 -  1794024 -A-
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    177252 1 +   484378 -A-
i caeSp111.Scaffold582  I 1 I 34
s caePb3.Scfld02_0       3291574 1 -  4147112 -A-
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18213   383505 2 +   720316 -AG
i caeJap4.Scaffold18213 C 0 C 0

a score=-10389.000000
s ce10.chrX              2577902 31 + 17718866 TAAATTGATC---AATACACATGTATT-------AAAATAG--
s cb4.chrX              17325250 30 - 21540570 TATACTGAAC---AGTTCAttgttat--------aaaattt--
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   141898 36 -  1794024 GTTACTTGCT-----TTTGGTGTTATTTCAGCTAAAGATGT--
i caeRem4.Crem_Contig15 C 0 I 3
s caePb3.Scfld02_0       3291576 37 -  4147112 ----TTCAACACaagcttcttgttttttttagctcatattt--
i caePb3.Scfld02_0      I 1 I 6
s caeJap4.Scaffold18213   383507 35 +   720316 -----TGAAT---Aatgtaaatttcaaaaacaaaaacatttat
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    177253 34 +   484378 I

a score=64550.000000
s ce10.chrX              2577933 149 + 17718866 TTTCAGATGAGATTGATGAAGACGACACAATGGATTTTGCAGAATTTAAATTTGGGCAAATCCCAGAAAAACCACTTCAACTCAAAGGTGAAGAATTCGAATTTTCCGGTCTTGAGCCATACATTTATATTAGTCATGCATGCACCGAA
s cb4.chrX              17325285 149 - 21540570 tttcagaTGCCTTTGATGAAGACGACACTTTTGATTTCGCCACCTACCACTTTGGCAAACAACCAGAGATGAAAGTTGCTTTGAAGGGAGAAGAATTCGAATTCTCCGGACTAGATCCATATATCTATGTAATTCATACATGCACCAAG
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15   141937 149 -  1794024 TCCCAGGTGCAATCGATGAAGACGACACAATGGATTTTTCCACATATACATTCGGCAAATCACCGGAAATGAAGCTGACACTAGAAGGCGAacaattcgaattttctggTTTGGATCCTTACATCTATGTCACTCATAACTGCGCGAAA
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    177287 149 +   484378 tttcagatgtttGGGACGAAGATGACACGTTGGACTTTGGAAACTATCGCTTGGGTCTCACCCCGGAAATGATACTCTCTTTGAGAGGACAAGAATTCGAGTTCTCTGGATTGGATCCGTATCTTTATATTGTCCATGCATGTACAGAC
i caeSp111.Scaffold582  I 34 C 0
s caePb3.Scfld02_0       3291619 148 -  4147112 -ttcagatcCATTCGATGAAGACGACACATTTGATTTTGGGATCTATAACTTTGGCGAAGTGCCGGAAAAAGTTCTTTACCTGACCGGAGAGGAGTTCGAAATTTCTGGACTTGAACCTTACATATACGTCAGCCACAGCTGCACGTCC
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   383542 149 +   720316 ttgaaGGTTTGTTCGATGAAGATGATACCCTCAATTTTGGAAACATCTATCTTGGCAAAAAGCCAGAGGAGAAACTGCAAATGACAGGTATTGAAGCTGAGTATTTCGGAATTGAGCCGTACCTTGTGGTTGTGCACTCTTGCAACAAA
i caeJap4.Scaffold18213 C 0 I 690

a score=-60679.000000
s ce10.chrX              2578082 413 + 17718866  
s cb4.chrX              17325434 480 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   142086 481 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    177436 439 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3291767 451 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   383691 690 +   720316 I

a score=57251.000000
s ce10.chrX              2578495 294 + 17718866 TTG--CGACGAGTTT-------TTCT---TTTTTT-------CGGTCCA---------------------------TCTAAAA------AATGGC--------------------ATTTAAAATAATTAACAGT----------------------CTTGAAAAAAGAAATGCAC---AA-----ACCTTC---------TTCTTCATCGTCG---ATAAATGGAATTTTGAGCATACTGATCGGCGGATTGGGTAGACCATTTTGGAAAGGCGAATCTCTTGGCAACCCGACACATTGAATTGTCTCGGCGAACGCTTCAATGTTGATGACAGAGAAACCTGCGTGCATCAT---GCTGTCCTCGACGAGGACTACGTTTGTGTACGCGTTGGCACCTTCCATCCTGAAA-
s cb4.chrX              17325914 345 - 21540570 --GCTCGACGCTGCT-------TGCG---CTTCTT-------TGGCACG---ACATCTGGAAGAATTTTATTGAGATTCAGCCTAGACTAAAGAC-----------------------TAAACTAGTCAAAAACCCA--GACTGGGCCCTGGGGT-CTAGACGAAGGGtctagattaaaaaatttaccaTT---------TTCATCCTCATCG---ATAAATGGAATTTGAAGCATGCCCAACGGCGGGCTCGGAATGCCATTATGGAATGGAGAATCCGCTGGGAGACCGACAAACTGAAGTGTCTCGGCAAATGCATCAATGTTGGACACTGAAAATCCGGGGTGCATTCC------GTCGCATATCAGAATGACATTAGTGAAGCGATTGTTGCTTTCCAATCTGAAA-
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15   142567 344 -  1794024 ---CTCGGAACTtctgaaat-ataca---aatttt-------tattgtgGGTGCCTGTGATTCATcttttttatgtttgaa--------aatgaC-----------GTTCCctttttttaaagtgtttcacaa------------------agtt-tttgaTAACATGTTGAGTC---AAAACCCACCTTC---------TTCTACGTCATCGTCTATATACGGAAGTGGAATTGATTTCAAAGGGGGATTCGGAAGACCACTTTGGAACGGAGCATCTCTCGGAAGGCCAACACATTGGAGACTTTCAGCAAATGCGTCAATGTTAACGACCGACAGGCCGGCATGTAGCCCAAAACGGCCATA---AAGAACTACGGTAGTATGTGGATTACTGTCTTCCAATCTGGAA-
i caeRem4.Crem_Contig15 C 0 I 54
s caeSp111.Scaffold582    177875 310 +   484378 ----TTGACGACGTTGT----TTGCG---TTTCTT-------CGGTGCT---------------------------TCTGA--------AATGTT-------GCATGTTTAGTTCTTGTGATTGACTCATACGT-----------------TGTTGTCTGAC------GTAGAAC---AACACTTACCCTC---------TTCGTCCTCATCG---ATAAACGGAATTCTGAGCATATTGAGTGGCGGGCTTGGGATTCCCATCTGGAACGGAGCATCAAGAGCGAGGCCAACACATTGGAGAGTCTCGGCGAACGCGTCAATGTTGATGACAGTGAATCCAGGATACAACAC---ACATTCATCGATAAGGACCACGTTGGTGTATGGGTTGACACCGTCCATTCTGAAG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3292218 351 -  4147112 GTGCTCGGC-ATGTTGTAATCTTGCGGCATTTCTGGAAATGACGGTATA---------------------------tacaa--------aatgatcaaaacaCTAAATTTGTGCTTTTTAATCGAATTGTGAATCA---------------TGTTGCCTTTCTActggagaaaac---aaaactcaccTTCCTCAACCGGTTCGTCATCGTCA---ATAAACGGAATTCTCAACATGTTGAGTGGTGGGCTTGGAACTCCAGGTTGGAATGGTGCATCACGTGGAAGGCCGACAGATTGAATACATTCGGCGAATGCTTCAATATTGATGACACTGAATCCTGGGTACATGCA---ACTGTTATCGATGAGAACGACGTTGTAGAACGGATTGCCTCCTTCcgctctgaaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   384381 319 +   720316 --TTGTGACGTGGCT-------TCCG---TTTCTT-------AGGGACA---------------------------TCtgc--------aaaata--------------tatttttctttaTACATATGGAGACGCAATGAAT--------TGTG-GTctacaaaatgaaaaaa----aaaactcaccatc---------tTCATCCTCGTCA---ATATACGGGATTTTTAGCATGCTGATCGGTGGACTTGGCAGCCCGCTTTGAAACGGAGCATCTTTGGGAAGGCCGACGCATTGAATACTTTCAGCAAATGCGTCAATGTTTATTACCGAAAATCCGGCGTACATAGAGCTACTGTCATCAATCAAGACCACATTGGTATAAGTGTTTCCACCCTccattctggaaa
i caeJap4.Scaffold18213 I 690 C 0

a score=1758.000000
s ce10.chrX              2578789 5 + 17718866 ATAAA
s cb4.chrX              17326263 5 - 21540570 ATAGA
i cb4.chrX              I 4 I 2
s caeSp111.Scaffold582    178185 5 +   484378 TTAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3292569 5 -  4147112 acaaa
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18213   384700 5 +   720316 aaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   142911 54 -  1794024 I

a score=522.000000
s ce10.chrX              2578794 6 + 17718866 CATAAG
s cb4.chrX              17326270 6 - 21540570 Gacgag
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold582    178190 6 +   484378 AACAAG
i caeSp111.Scaffold582  C 0 I 28
s caeJap4.Scaffold18213   384705 6 +   720316 catagt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3292574 17 -  4147112 I
e caeRem4.Crem_Contig15   142911 54 -  1794024 I

a score=743.000000
s ce10.chrX              2578800 7 + 17718866 TTTCTGC
s cb4.chrX              17326276 7 - 21540570 tttttgt
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold18213   384711 7 +   720316 tTGATGT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3292574 17 -  4147112 I
e caeSp111.Scaffold582    178196 28 +   484378 I
e caeRem4.Crem_Contig15   142911 54 -  1794024 I

a score=-129.000000
s ce10.chrX              2578807 33 + 17718866 TGGTATACGTCATTTGAAATTTGAAAAACCTTA
s caeJap4.Scaffold18213   384718 28 +   720316 GGAAaca-gtaaatt----tttaaataaattta
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3292574 17 -  4147112 I
e cb4.chrX              17326283  1 - 21540570 I
e caeSp111.Scaffold582    178196 28 +   484378 I
e caeRem4.Crem_Contig15   142911 54 -  1794024 I

a score=0.000000
s ce10.chrX              2578840 376 + 17718866 TGTTCAGGTGGCCCTGTACAATATTTCTTAAGAGGTTTTATATAGTTTTTAAACAAAAAAATGTCCGTCAAGAATTATATACAGTTCAAACTGCTCATATGCAGCTAAATATTTTCAGGATATACTATGGTCTTCTTTCAAATGttatattatatatttattttttGAATTCCAAAAATAAATTTAGATTGGGACAGTAAGTAAAGTGCTTGAAAGCTTGACATAATTAAAAATTTTACAAGCTTGAGttttttaaaaatttaattattataaGTTGTGTTTTGTTTCAATTCACGATGTGAGTAGAACCTTGATTTATTAAAATCAATCTTCCTGGTCTTGAAATCATGTGAAAAATTTTTACACCCCTAATTCA
e caePb3.Scfld02_0       3292574  17 -  4147112 I
e caeJap4.Scaffold18213   384746   0 +   720316 C
e cb4.chrX              17326283   1 - 21540570 I
e caeSp111.Scaffold582    178196  28 +   484378 I
e caeRem4.Crem_Contig15   142911  54 -  1794024 I

a score=570.000000
s ce10.chrX              2579216 50 + 17718866 GAATATTCCTTGTTAAAATGGCTTTGATATTAAGTGCTTAACGTTTTTTT
s caePb3.Scfld02_0       3292591 39 -  4147112 gaacatttgtttttgaaacagtcatcGTGTT-----------GGTTTTTC
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18213   384746  0 +   720316 C
e cb4.chrX              17326283  1 - 21540570 I
e caeSp111.Scaffold582    178196 28 +   484378 I
e caeRem4.Crem_Contig15   142911 54 -  1794024 I

a score=-771.000000
s ce10.chrX              2579266 7 + 17718866 TGCGATA-
s caeRem4.Crem_Contig15   142965 7 -  1794024 TACAATA-
i caeRem4.Crem_Contig15 I 54 I 12
s caePb3.Scfld02_0       3292630 7 -  4147112 -ACCCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   384746 0 +   720316 C
e cb4.chrX              17326283 1 - 21540570 I
e caeSp111.Scaffold582    178196 28 +   484378 I

a score=-618.000000
s ce10.chrX              2579273 12 + 17718866 TTTGGTAATTAG
s cb4.chrX              17326284 11 - 21540570 -tttgtaaatAT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   142984 11 -  1794024 -TTTATTAGGGC
i caeRem4.Crem_Contig15 I 12 C 0
s caePb3.Scfld02_0       3292637  9 -  4147112 ---TGTCGATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   384746  0 +   720316 C
e caeSp111.Scaffold582    178196 28 +   484378 I

a score=-756.000000
s ce10.chrX              2579285 2 + 17718866 TT
s cb4.chrX              17326295 2 - 21540570 GA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   142995 2 -  1794024 TA
i caeRem4.Crem_Contig15 C 0 I 2
s caePb3.Scfld02_0       3292646 2 -  4147112 TC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   384746 2 +   720316 ca
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    178196 28 +   484378 I

a score=82918.000000
s ce10.chrX              2579287 149 + 17718866 TACCTATTTAGATGGCTTGCCCACCAAACGTTGTTAATACAAATTCCCCAACTCTTGCAGAGCGACTCATCTTTGCAGTCGATTCCGGCCGCGTAAAACACCTTCAGCACATCTTTTGCTTTAATGACGCGACAATTTCTTCTCTGA---AA
s cb4.chrX              17326299 149 - 21540570 AACCGATTGAGGTGACTGGCCCACCAGACGTTGTTCATGCAGATTCCCCAGTTTTTGATCACCGTCTCGTCGCGGGTGTCGGATCCGGCGTTGTAGTAGATTTTCGTCACACTTTGCACTTTCACGACGCGACTGTTTCTTCtctga---aa
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   142999 149 -  1794024 TACCTATCAATATGACTGGCCCACCAGACATCATTCATGCAGATACCCCAGTTTTTGCATACGGTCGAATCTTTGTAAGTTGCTCCTGGAGTATAATAGACTCTGTCAATATCCTTTGCTTCTATGACACAActgtttcttttctga---aa
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    178224 152 +   484378 TACCTGTTGTGATGACTTGCCCACCAGACATTGTTCGAACAGATTCCCCAACTTTTGCAAACAGCTCTATCCGTACAGGAGGGTCCCGGAGCGTAGTGAACCCGTGACACGTTCTTCACATTGAGAACACGacaatttcttctctgaattaa
i caeSp111.Scaffold582  I 28 C 0
s caePb3.Scfld02_0       3292651 149 -  4147112 TACCTGGTGAGGTGACTGGCCCACCAAACACTGTTGATGCAGATTCCCCAGTCTTTACAGACTCTTCTGTTATTGCAAGACGGCCCAGGAGCATAGAACACTTTGTCCACATCTTTTGCATTCAGAACTCGACAGTTCAGtctctgg---aa
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   384748 149 +   720316 TACCTATTAAGGTGGCTTGCCCACCAGACGTTGTTGATACAACAGCCCCAacttttgcacaaaaattcgTCCTTACACGACTGTCCCTCCGCATAATACACTTTCACAACGTCTTTTGCCTTTATCACACGGCTATTTCTCTTCTGA---AA
i caeJap4.Scaffold18213 C 0 I 62

a score=546.000000
s ce10.chrX              2579436 1 + 17718866 A
s caeRem4.Crem_Contig15   143148 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 67
s caeSp111.Scaffold582    178376 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3292800 1 -  4147112 a
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold18213   384897 62 +   720316 I
e cb4.chrX              17326448 0 - 21540570 C

a score=0.000000
s ce10.chrX              2579437 2 + 17718866 GT
e caePb3.Scfld02_0       3292801 33 -  4147112 I
e caeJap4.Scaffold18213   384897 62 +   720316 I
e cb4.chrX              17326448 0 - 21540570 C
e caeSp111.Scaffold582    178377 3 +   484378 I
e caeRem4.Crem_Contig15   143149 67 -  1794024 I

a score=-830.000000
s ce10.chrX              2579439 9 + 17718866 TGCAAAAAT---
s cb4.chrX              17326448 7 - 21540570 ---caaaatt--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    178380 9 +   484378 ---tgaaataat
i caeSp111.Scaffold582  I 3 I 18
e caePb3.Scfld02_0       3292801 33 -  4147112 I
e caeJap4.Scaffold18213   384897 62 +   720316 I
e caeRem4.Crem_Contig15   143149 67 -  1794024 I

a score=-4334.000000
s ce10.chrX              2579448 625 + 17718866  
s cb4.chrX              17326455 439 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3292801  33 -  4147112 I
e caeJap4.Scaffold18213   384897  62 +   720316 I
e caeSp111.Scaffold582    178389  18 +   484378 I
e caeRem4.Crem_Contig15   143149  67 -  1794024 I

a score=-849.000000
s ce10.chrX              2580073 11 + 17718866 -TTTGA--AAATAG
s cb4.chrX              17326894 11 - 21540570 TTATAATGAAC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   143216  8 -  1794024 -tttga--aaa---
i caeRem4.Crem_Contig15 I 67 C 0
e caePb3.Scfld02_0       3292801 33 -  4147112 I
e caeJap4.Scaffold18213   384897 62 +   720316 I
e caeSp111.Scaffold582    178389 18 +   484378 I

a score=910.000000
s ce10.chrX              2580084 1 + 17718866 A
s cb4.chrX              17326905 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   143224 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    178407 1 +   484378 A
i caeSp111.Scaffold582  I 18 C 0
s caeJap4.Scaffold18213   384959 1 +   720316 A
i caeJap4.Scaffold18213 I 62 C 0
e caePb3.Scfld02_0       3292801 33 -  4147112 I

a score=62734.000000
s ce10.chrX              2580085 191 + 17718866 CTCACAACATGTCCATGTCGAATATCATCT-------AGATGAAATTCGGCTCGGCTATTGAAATTGTAATAATGCTTAATGTGAATAGTGCCATCGGCGGCCACTGCAACAAATGGATCTTCATACACTGACGGTGCTC-----G-------------AGGTTGAGA-GCACGATGCGGAGGTAGATGGAACATCACTGCCTGTAAA----TGAACTGTT-
s cb4.chrX              17326906 208 - 21540570 CTCACGATATGTCCATGACGAACGCCTTGA-------ATCTGGAACTCGGCTCTGTTGTGGAAGTTGTAGTAGTGCTTGATATAGATGGTTCCATCGGCAGCGACAGCAACAAACGGATCCTCGTAGATCGATGGAGCTCGCTTGG---AAGTCGGTGTTGGTTGAGA-GCACGATGCCGAGGTTGAGGGAACGTCGCTGGCTGAAAATA--CGAAACTTT-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   143225 195 -  1794024 cttaccaCATATGCATAACGGAACTCCGAC-------ATTTGATACTCAGCCAATTCATTAAAGTTATAATAGTTCTTAACATAGATCGTTCCATCTGTTAAAACAGCTACAAATGGATCTTCGTAGA------GACCTC-----G---ACGACG----TGGTTGTGT-GCTAGCCGCAGAAGTAGATGGTACGTTGCTAGCTGTAAACATTCCAGCTCTc-
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    178408 203 +   484378 CTTACAATGTGGCCATGACGAACTGTTTCC-------ATCGTATGCTCGGCTCTTTCGTTGAAATTATAGTAGTGCTTGACGTAGATTGTTCCATCAGCGGCAACAGCGACAAACGGATCTTCATAGACAGACGGAGCTC-----G---TCGTGG--AACACTTGGGGCACTGGCAGCTGAAGTAGATGGCATTTCGCTACCTGGAAAAG-TTAAGCTTCT-
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3292834 201 -  4147112 CTTACGATATGCTCATGTTCGATTCCCTCCGTGTGGTACTGAATGTCCGG-------GTTGAAGTTGTAGTAGTGCTTGACGAAGATTCGACCATCAGGAAGAATAGCCACGAAAGGATCTTCATAAATAGCTAGAGTAC-----GCTTTCTTCG--TTTGCGTGCGG---TAGATGCAGAAGTTGATGGTCTGCTGctgcctgaaaaa---tgaactatt-
i caePb3.Scfld02_0      I 33 I 147
s caeJap4.Scaffold18213   384960 190 +   720316 CCCACCACTTGCGGAATACGAATATTTTCC-------AAATGAAACTCGGCCTTGTTGTGATAATTGTAGTAGTGTTTCACGTATATTGTGCCATCTGCAGTAACGGCAACAAAGGGATCTTCGTACACAGACGGAGAAT-----T-------------------AGA-GCATGAAGCAGAAGTGGACGCCACTTCGCTGTCTAGAAACTTTTGTTATGGTT
i caeJap4.Scaffold18213 C 0 C 0

a score=-2170.000000
s ce10.chrX              2580276 12 + 17718866 AAAA----ATATTTTT--
s cb4.chrX              17327116 16 - 21540570 AGAATGTTATGAGATG--
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   143422 12 -  1794024 ataa----aaaaaact--
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    178614 12 +   484378 ATAA----ATATagtt--
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   385150 12 +   720316 --AA----acagattttc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3293035 147 -  4147112 I

a score=9969.000000
s ce10.chrX              2580288 126 + 17718866 AACTCATTTTG---ATG-ATTACTTGGCAATGAATTGATTC---------GTGATTTATTGTTGTTGTT------CG---GAGATGTCGATG------TG---ATTGGTTGCATTTCCATGGATGTT---CGAGAACTGTCTTCG---GTGTCTTGTTCTGTA
s cb4.chrX              17327132 137 - 21540570 --------AGG---ACAAACGACTTGGAAGAGAGTCAATGC---------GTGGTTTGTTATTGCTGTTCTTCGAGG---ATGGGGTGGTCGGATTGACAGCCATTGTCTCCATTTCCATGACAAGA---CCAGATGTTTCTTCGGATGAGCCTTGCTCTGGA
i cb4.chrX              C 0 I 382
s caeRem4.Crem_Contig15   143434 116 -  1794024 --------aaaactacaTACTGCTTGGAGAAGATTTAGCGC---------GAGGTTT------------------TG---GTGGCGTTGGAGGTTTTGCA---ATCGGTTgcatttcaatttcaagt---gGAGTGTTCTCTTCG---ACATCTTGTTCTGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    178626 128 +   484378 -----attgag---aaaaattactAGGAAGCGAATCGACTC---------TTGGTTTGTTGCTGCTTGT------GG---CAGTCGTTGGAGTTGAAGCA---ATCGGCTGCATTTCTATTGAAAGC---GGAGTACTTTCTTCG---GAATCTTGCtctgaa
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3293182 136 -  4147112 AAATTATTCAT---ATGACTCACTCGGCAACGATTCGACAG---------CTGGCTTAGTATCAGTAGT------AGAATCTGAGGTTGATGGTGTACTA---ACTGGTTGCATTTCCATCGATAAT---GGTGTACTTTCCTCG---GAATCTTGGCCTGCA
i caePb3.Scfld02_0      I 147 C 0
s caeJap4.Scaffold18213   385162 125 +   720316 ---------aa---atttctcacTTGGTAAAGAGTTAATGCGCTTTTTGGGTGTTTTCTTTGCGGTAGC------AG---GTAGAGCCGGCA------CA---ACTCGTTGCATTTCGAAAAACGCTTCGGCGGAACTTTCTGTG---GAATC---CTCTG--
i caeJap4.Scaffold18213 C 0 C 0

a score=-8192.000000
s ce10.chrX              2580414 16 + 17718866 -------------AAACCATCGG----------CAATTT
s cb4.chrX              17327651 15 - 21540570 --------------aaaactcaa----------aaactc
i cb4.chrX              I 382 I 2
s caeRem4.Crem_Contig15   143550 24 -  1794024 ---------------AAGATCAACATTCTcttcaaatta
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    178756 16 +   484378 -------------aaatgattgt----------atattt
i caeSp111.Scaffold582  I 2 I 56
s caePb3.Scfld02_0       3293318 16 -  4147112 -------------AAAATATTGG----------TTCTTT
i caePb3.Scfld02_0      C 0 I 145
s caeJap4.Scaffold18213   385287 28 +   720316 AAACTACTTACAGAAATACTTGA----------TTTTT-
i caeJap4.Scaffold18213 C 0 C 0

a score=-3456.000000
s ce10.chrX              2580430 16 + 17718866 -------AAAAACTTCGACTGTT
s cb4.chrX              17327668  4 - 21540570 -------aaaa------------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   143576  7 -  1794024 -------aaaaatg---------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    178828 16 +   484378 -------AATAACGTCAATTGTT
i caeSp111.Scaffold582  I 56 I 28
s caeJap4.Scaffold18213   385315 22 +   720316 GAAACACAATTATTTAAAATGT-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3293334 145 -  4147112 I

a score=5534.000000
s ce10.chrX              2580446 37 + 17718866 ACTCACTTGCTG-----------------------------TTGACCGT-TTATTCCGGAAGCTGAG
s cb4.chrX              17327672 36 - 21540570 -cttacGAGATG-----------------------------TTGGACGC-TTGTCACGGAAACTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   143583 66 -  1794024 ttttagaacACGAACATTATACTTTGGTAATAACAACTCACTTGTCCCC-TTTTTACGAAAGTTGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    178872 37 +   484378 ACTCACGAGAAG-----------------------------TTGGGCGT-TTTTCGCGGAAACTGAG
i caeSp111.Scaffold582  I 28 C 0
s caePb3.Scfld02_0       3293479 34 -  4147112 ACTTACTGGAAG-----------------------------TTGGGCGC-TTT---CTGAAGCTAAA
i caePb3.Scfld02_0      I 145 C 0
s caeJap4.Scaffold18213   385337 38 +   720316 ATTAATATTTTG-----------------------------TTTACCGTGTTATTGCCGAAGCCGGG
i caeJap4.Scaffold18213 C 0 I 2160

a score=67441.000000
s ce10.chrX              2580483 491 + 17718866  
s cb4.chrX              17327708 591 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   143649 542 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    178909 557 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3293513 515 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   385375 2160 +   720316 I

a score=60128.000000
s ce10.chrX              2580974 56 + 17718866 GAACTGTCAGTAAAAGTAAACAAAGTTG-----------------AATTCCGTAAAATTTCAAACAAATCGA----C
s cb4.chrX              17328299 59 - 21540570 GAACTGTCAGTAGAA-TAAACAAGGTCG-----------------AATTCCGTAAAATTGCAAACAAATCGACAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   144191 55 -  1794024 GAACTGTCAGTAAAA-TAAACAAGGTCG-----------------AATTCCGTAAAACTGCAAACAAATCGA----C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    179466 55 +   484378 GAACTGTCAGTAAAA-TAAACAAGGTCG-----------------AATTCCGTAAAATTGCAAACAAATCGA----C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3294028 55 -  4147112 GAACTGTCAGTAAAA-TAAACAGGGTCG-----------------AATTCCGTAAAATTGCAAACAAATCGA----C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   387535 72 +   720316 GAACTgtcagaaaaa-taaacaaaatcgGAGGGAGAGCGGGAGAAAGTTCCGTGAAATTGCAAATAAATCGA----C
i caeJap4.Scaffold18213 I 2160 I 2370

a score=-14742.000000
s ce10.chrX              2581030 160 + 17718866 TGGGGACAGGTTGAACGAGCAGAGGTGAATGGCATTGTGCTAGTCTCGGGGTGAATTTGAAATTGCTCATAGTGAAAATGAGAAGA---ATAGGA----------GATGGGTAAGAATGAATTGGTGTGCACTTTTGAAC---------AAGTGCACTGTAATAAATTT-GAATGTCTAAAGA
s cb4.chrX              17328358 149 - 21540570 A-TTGGCACACTAG--GTGTTG-GTGGTGTGCTGGTGG-------------AGAATTTCAAAGAGC---GGAGAAAAATGGTAAAATGGAATTGA----------AACGCGC-CTGCTCTGGTGCACTTCA--AAGAAATAGTAGGAGAGAG-GAGAAGCAATAAATTTGGAATAGCCTATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   144246 152 -  1794024 T-TCGACAGGAGAG--GAGCAGAGTAAAATAGCACTGggaca---------aaaatgtgaaaatg-------aatgaatggtAAAATTGAATGGACAACTGGTAGGATGGGC-GTATTAAATTGCATTGCACTCACAAAT---------GGA-GAGAGGTAATAAATTT-TAGTACTTGTTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    179521 128 +   484378 T-GCCACAGAAGAG--GAGCGG------ATGGCAGAGG-------------AGAACT-CAAAGAG----AGATGTGGATGGTAGAA---ATTAAA----------CGCGAGT-GGTTTGAATTGCTGTGTACTTTTAGAA---------AGA----CAATAGTAAATCT-GAatataaaatga
i caeSp111.Scaffold582  C 0 I 198
s caePb3.Scfld02_0       3294083 127 -  4147112 T-GCCACAGAAGAG-CCAGTAG------AT-GCAAAGG--------------GCACT----GGTG----GGAGGCGAGAGTTTGAA---ACTGGC----------AAGAGAT-GAATTGAATTGCTCTGCACTATTGAGT---------AGA-GTGCCATAATAAATTC-GAATACAAAATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I

a score=-18929.000000
s ce10.chrX              2581190 160 + 17718866 TATTGGTGCTTGAGGAAGAGGCA---------ATTTTCTTTTTTTAACCTTTTTGGGAGGAAATT-TAAAAAAA------------AGGGTTTGAATAAAAATTAGCGTAAA----------TTCAGGAACGA-------GAAAAACTGAACATAAAATTGTAT-------------ATTCTGAACTGAACTTCATCCTTATTTTGTTCTAA
s cb4.chrX              17328507 174 - 21540570 AATTAACATTTGAGCTATGGCTA-----GGTCATGTGCTCTTTCTATTCTCTCTGTGTCTCGACAACaacaatatttgaattttttaagtttcaaatcgaaaaagtctcaaaccaaaagttttcgaatgaAGAGCGGATTGAGTAGTGGGAT--AAGACTTTAA-------------AGTC----ATAAATGCC-------CTTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   144398 169 -  1794024 GATGAGTATTTGAGCTATAGCTATGGTTGGTCATGGGGACTTT--------TCTGCTGgccaattataaaaata-------------------aaacagaaatggCCAGAAAAGTACAACATgagtaagaaaa-------aaatagttgaat-caaaaatttaatctTCCCAAGAGGACTA----ctaaattcca----aattttgtcATAA
i caeRem4.Crem_Contig15 C 0 I 110
s caePb3.Scfld02_0       3294210  96 -  4147112 AATTAATATTCCATCTGGAG-TA-----GGTCATGTGCTCTCATGACT---TGTGGTATTGGATT-CCATAATA------------------------------------------------TTCAATGCAAA-------TATCAGTC------AAAGCTCTAT-------------ACT--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    179649 198 +   484378 I

a score=-14255.000000
s ce10.chrX              2581350 249 + 17718866 TAATGTTGTAGCTAACAGAAAAATTCATTATTTTTTAGTTATTTTTGAATGGTAAAAACAAAGTATGGGGGGCTATATTTTTGGAAAACAAACT----------------------GCCGTTAAACCGTTAAA------CGTTAAAAGTTTAATCAACGTTTGAAATTCGCTCAAATGAACAAA---------TAACGTTAATG---------------AAACTTCTCAAAAAAAAACTTGGCAAATCAT------AGTGTTATAT-----------CGTTAGTTAAGGTAATATTAGGCCa--ataat---------ttaataaaaat
s cb4.chrX              17328681 289 - 21540570 ------TATACATAAAAAAGAGATTC--TAATCTTGcacttttatatttttgtataTACAGACGTCAG-----AacatttgaagaagaaaaaaacgtgTTTTGGAGAAGGACAAGGGCTGCAAAACTACTAAAACTTGGCATTAGGAG--------GCAGTAACAATC-AATAAGATagacaaaaacgtatttttccgttgatttttgtccattttgaccattttttcaaaag-----tctggagATCGACTGTCAAGTCTCCAAT----TACTACCTTTTAGTTg-----gttttaggtcattttgac----tatttccaaaaaaaat
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3294306 164 -  4147112 --------------------------------------------------TGTAGTCAGTAACAGTAG-----TACTCTTGACGAAAGCA--------------------------GCTACAATGTTAT----------CTCTAAGAG-------AACATTAAAAATC----TTGAGAAGCAAAAGCT--TTCTCTCGTTACTC----------------------------------------------------AGCCTTCAATAGAGCAGCACGTGTTAGTTA-------CATAAGACA--TTGACAGCGCATATTTGATCAATAT
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    179649 198 +   484378 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=-517.000000
s ce10.chrX              2581599 78 + 17718866 t--------------attttCTGATCGCTGTGGCACGATAAAATGGCCAAGATTCAACATAAATATTTTTAAGTACTTTTGAGAA-ATTTCat
s cb4.chrX              17328970 78 - 21540570 ggagcttGCCGGACAAacttccgatcactttgaaaagtttagagggtgta----------aaacataCCTAGGT-----CGAGAACATTGCAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3294470 51 -  4147112 I
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    179649 198 +   484378 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=-1483.000000
s ce10.chrX              2581677 33 + 17718866 ---taaaaaattttttagcataattattattttttt
s cb4.chrX              17329048 34 - 21540570 TAAcagattctttttttga--aattcctagactttc
i cb4.chrX              C 0 I 227
s caePb3.Scfld02_0       3294521 28 -  4147112 ---TAAAGAGGTGTCTAGC--AAGTAACAACCG---
i caePb3.Scfld02_0      I 51 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    179649 198 +   484378 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=-1987.000000
s ce10.chrX              2581710 159 + 17718866 tttttttcataattatttttttaatatttttaGCATATTTTTTAAAGCATATTTTGAGTCTACATATACGTTGAAATTCCAGAAACCGTTTGTCCTCTTTTAAGCCTCCtattaataatttaatgttttgaatttaaaaaaaaatCGAACAGATCTAAA
s caePb3.Scfld02_0       3294549  85 -  4147112 --TCCTCCAAAAT-------------------GTAAGTCCTTCAAAATGTAAGCC-ATTCCAAATGAAAGCCGAAGCACCAACA---------------------------------------------------TAGAAAGTATCAGGC-GATATATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e cb4.chrX              17329082 227 - 21540570 I
e caeSp111.Scaffold582    179649 198 +   484378 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=-3128.000000
s ce10.chrX              2581869 40 + 17718866 AGTTACATCCTTGCTAAT--------------CCCACAC-----------ACTTGAAGAACCGAT
s cb4.chrX              17329309 64 - 21540570 AGCTTCAGCCTAAATAAGCCGCATCAAAGTGTTCTAAACGTTCAGCaagcatttgaaaaatcac-
i cb4.chrX              I 227 C 0
s caePb3.Scfld02_0       3294634 22 -  4147112 ------AGACTAA-------------------TCTACAC-----------------AAATCTGC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    179649 198 +   484378 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=546.000000
s ce10.chrX              2581909 1 + 17718866 A
s cb4.chrX              17329373 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    179847 1 +   484378 A
i caeSp111.Scaffold582  I 198 C 0
s caePb3.Scfld02_0       3294656 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeRem4.Crem_Contig15   144567 110 -  1794024 I

a score=16394.000000
s ce10.chrX              2581910 198 + 17718866 CTTGACCTGTT-CGATCATTG------A--GATTTCGCTAACA----AAAAAAGATCGACAA-----------CAGCAACATGTTGCGTGGG-------GCGTTCGA-TGAAAAAGGAATGCGG-ATGGGAG-------------GCGAGTAGACAAA--GAAAGCG--AAATATTTTGGAAAACGGTCG------CATGCGCG-ACGCG------GCAAAAGCCAATG--CCCATTAAACGTCCAAAAAAGCAGCAGAG------GGT
s cb4.chrX              17329374 204 - 21540570 ctTGACCCGTTCCG-------------ATCGGTTAAGCTAAGG-------------CGTCAAGTCGTTCCGATAGGCAACATTTCGCGCGCAGCGCTTTGCgttcaaatcaaaaaagaatgcGG-Atagaa--------------------aaacggg--aaaatcT--GACTTTTTTGTAAGCGGATTGGGATTGCATGCg---gccaaaaaagtgaaaacgt-------cCCATAAAAACTC--TCAAGGCTTCAGAGAAAAACG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   144677 205 -  1794024 CTTGACATGTTCCA--CATTCACGAGTAttgatgagagaaaaac----------tTCGTTAAGCCGTTCTGA-AGGCAACATTTTTC----------CTGCGTTCAA---TAGAAAGAATGCGG-ATAAAAGCAG----------ATGCGTAGACAAA--CAAaacgaaaacatttttgagaaacagtCGTCGACGCATGCGTGCGCCAGAA----GGCAATG--------cccataaaaa-----tcaaaagctGGGAG------G--
i caeRem4.Crem_Contig15 I 110 C 0
s caeSp111.Scaffold582    179848 209 +   484378 CTTGACCTGCC-----CATTC------AGCGGTTTAGCttacacaaaaaaaacgGGTGTCAAGTCATTGTGA-AGGCAACATTTTGC------------GCGttcga-tgaaaaaggaatgcGG-ATGGGAGGAG----------ATGCGTAGACAAA--GAAACGccaaacattttcgaaaaacggtCGACGAAAAATGCGTGTGCGCG------GCAGAAGC-------CCCATAAAAACG---AGAAAGCCGAGGAG------GGT
i caeSp111.Scaffold582  C 0 I 108
s caePb3.Scfld02_0       3294657 223 -  4147112 CTTGACCTGTCGCGATCATAC------ATCGGTTAAGCTGACGC--TAGAAGTCGGCGTCAAGTCGGTGAAA-CAGCAACATTTTGC------------GCGTTCGA-TGAAAAAGGAATGTGGAATGGGAGGAGAAGGACAGCAATGCGTagacaaaagaaaacgagaaacatttttgaaaaacggtcgTAGAAGCATGCGCGAGCGCGAA----GCAAAAGCCAAATGTCCCATAAAA-------------CGACGAA------GG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I

a score=1476.000000
s ce10.chrX              2582108 59 + 17718866 CTGGGA------AGACAACGGAACAAAAGCAGTGCGTCGAGCACTCGTTTTGAAATTTTGACTTA
s cb4.chrX              17329578 39 - 21540570 TTGGGG------AGA--------------------GTTCAAAATGCATTTCTAGAATTTAAATGA
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig15   144882 39 -  1794024 CCCAAA------AGA--------------------GTTCAAAACTCATTTCTAGAATCTAAAAGG
i caeRem4.Crem_Contig15 C 0 I 5
s caePb3.Scfld02_0       3294880 36 -  4147112 CTGGGGGGCCAAAGA--------------------GTTTGGAACTCATTTCTGGAA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    180057 108 +   484378 I

a score=-1457.000000
s ce10.chrX              2582167 32 + 17718866 TTGACTTGTTCTAAGCTTTCCTATGAATTGCT
s caeRem4.Crem_Contig15   144926 24 -  1794024 ------TTTTCTAA--TGCAAaacgaatagaa
i caeRem4.Crem_Contig15 I 5 I 1
s caePb3.Scfld02_0       3294916 11 -  4147112 ---------------------TATAAATGGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e cb4.chrX              17329617 15 - 21540570 I
e caeSp111.Scaffold582    180057 108 +   484378 I

a score=-3584.000000
s ce10.chrX              2582199 15 + 17718866 AAAATTGT-------------------------ACCAAAT
s cb4.chrX              17329632 15 - 21540570 AGAATGAA-------------------------ACAAGAT
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15   144951 38 -  1794024 aaaacgaataaagtTGAAGTTAAATACCGA--CACATGAT
i caeRem4.Crem_Contig15 I 1 C 0
s caePb3.Scfld02_0       3294927 14 -  4147112 --------------------------CCCATCTACCAAGT
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    180057 108 +   484378 I

a score=-3267.000000
s ce10.chrX              2582214 67 + 17718866 ACCTAGTATACCTACTTAGTATAAGTGTAGTATTAGTTAGTTTAGTGTAACTAGTTCATATTTGAAA
s cb4.chrX              17329647 21 - 21540570 ACCAAGCG---------GGTAGGGATG-------------------------------------AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   144989 21 -  1794024 ACCGAACG------ATTGCTGGGGATG----------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3294941 80 -  4147112 I
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeSp111.Scaffold582    180057 108 +   484378 I

a score=311.000000
s ce10.chrX              2582281 2 + 17718866 CT
s cb4.chrX              17329668 2 - 21540570 CT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    180165 2 +   484378 Tt
i caeSp111.Scaffold582  I 108 C 0
e caePb3.Scfld02_0       3294941 80 -  4147112 I
e caeJap4.Scaffold18213   387607 2370 +   720316 I
e caeRem4.Crem_Contig15   145010 0 -  1794024 C

a score=25278.000000
s ce10.chrX              2582283  93 + 17718866 CGTTGACATCAGTCAAAAATGCGGAAT-AAACCAAG--------------AAAACACG----AGACCACCTAGTATACAATTTCCGCTCGTGATAGATGAGAAAGGCAACGG--------
s cb4.chrX              17329670  88 - 21540570 TGGTGATGTGACAAAAAACGACGTCGT-CAACAAGA--------------------------AGACCACC---AATACAGTGTC--TGCGTGATAGATGAGAAGGGCaatggaagagaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   145010 105 -  1794024 -GgaggagaaagaaagaaaggcgGAAT-AAACTTGATGGTGTGGAGCGAAAAAACGGGGAACAGACCACC---TATACACTCGC--GTCTTGATAGATGAGAAGGGCAACGg--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    180167  94 +   484378 cgatggaaaaagaagaaaaggtgGAATAAAACTTGACGTTGTCG------AAAAC-------AGACCACC---TATACACATGC--GTCGTGATAGATGAGAAGGGcaacgg--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3295021  92 -  4147112 TGATGGAA-------GAAAGGCGGAAT-AAACTTGACGAGGTGGAAGTGAAAAAC-------AGACCACC---TATACACTTGT--ATCGTGATAGATGAGAAGGGCAAcgg--------
i caePb3.Scfld02_0      I 80 C 0
e caeJap4.Scaffold18213   387607 2370 +   720316 I

a score=68625.000000
s ce10.chrX              2582376 100 + 17718866 AGAAGAAAGTAATTTAG----TTTTTGA---TGCTGACCTTC-----CGTGCCACGACGTGTTAAGTTTACATCTTCTTTG--TTGTCT-------GGCATC----TAGAAACTGGTCTCATGAT---
s cb4.chrX              17329758 110 - 21540570 aaaatagaataattttgtagtttcttGATGCTGCTGACCTTCCCCTTCATGCCACGACGTGTTAAGTTCACATCTTCT-----TTGTCT-------GGCAGC---CCAAAAACTGGTTTGTTCAT---
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   145115 103 -  1794024 agaacaaaataatttcg----tTTTTGA---TGCTGACCTTC-----CGTGCCACGACGTGTTAAGTTTACATCTCCTTTGTGTTGTCT-------GGCAGC---CAAAAAACTGGTCTCATCGC---
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    180261 102 +   484378 agaaaaaaataatttcg----tttttga---tgCTGACCTTC-----CGTGCCACGACGTGTTAAGTTTACATCTTCTTTGCATTGTCT-------GGCATC----CAAAAACTGGTCTGATCGT---
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3295113  98 -  4147112 agaagaaaatg------------tttga---tgCTGACCTTC-----CGTGCCACGACGTGTTaagttttcatcttctttgtaTTGTCT-------ggcagcagaaaaaaaactggtctCTTTAT---
i caePb3.Scfld02_0      C 0 I 317
s caeJap4.Scaffold18213   389977 108 +   720316 aaaagaaatgaatgacA----TTTTCAA---CGCTGACCTTC-----CGTGCGAAGACGGGCCAACTTTGCGTTTTCTTTG--TTGTGTACGTCTGGGAAAC------AAAACTGGTCTGATCACGGT
i caeJap4.Scaffold18213 I 2370 C 0

a score=3242.000000
s ce10.chrX              2582476 4 + 17718866 TCAA
s cb4.chrX              17329871 4 - 21540570 TCAG
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   145221 4 -  1794024 TCAA
i caeRem4.Crem_Contig15 I 3 I 389
s caeSp111.Scaffold582    180366 4 +   484378 TCAA
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   390085 4 +   720316 TCAA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3295211 317 -  4147112 I

a score=753.000000
s ce10.chrX              2582480 2 + 17718866 TA
s cb4.chrX              17329875 2 - 21540570 CA
i cb4.chrX              C 0 I 2157
s caeSp111.Scaffold582    180370 2 +   484378 CA
i caeSp111.Scaffold582  C 0 I 314
s caeJap4.Scaffold18213   390089 2 +   720316 CA
i caeJap4.Scaffold18213 C 0 I 358
e caePb3.Scfld02_0       3295211 317 -  4147112 I
e caeRem4.Crem_Contig15   145225 389 -  1794024 I

a score=0.000000
s ce10.chrX              2582482 703 + 17718866  
e caePb3.Scfld02_0       3295211 317 -  4147112 I
e caeJap4.Scaffold18213   390091 358 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    180372 314 +   484378 I
e caeRem4.Crem_Contig15   145225 389 -  1794024 I

a score=1015.000000
s ce10.chrX              2583185 58 + 17718866 AAATACAATCTATACAAAAAATGCTCGGATCAACAAAGAAAAAACTGGCTTTATTGTG
s caeJap4.Scaffold18213   390449 41 +   720316 agacacaaacaataaaaagaagggttggagcaacaaaaaaa-----------------
i caeJap4.Scaffold18213 I 358 C 0
e caePb3.Scfld02_0       3295211 317 -  4147112 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    180372 314 +   484378 I
e caeRem4.Crem_Contig15   145225 389 -  1794024 I

a score=0.000000
s ce10.chrX              2583243 10 + 17718866 CTAATAAATT
e caePb3.Scfld02_0       3295211 317 -  4147112 I
e caeJap4.Scaffold18213   390490  0 +   720316 C
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    180372 314 +   484378 I
e caeRem4.Crem_Contig15   145225 389 -  1794024 I

a score=141.000000
s ce10.chrX              2583253 8 + 17718866 AACGACAA
s caeRem4.Crem_Contig15   145614 8 -  1794024 aaagaaaa
i caeRem4.Crem_Contig15 I 389 I 1
s caePb3.Scfld02_0       3295528 2 -  4147112 ------AA
i caePb3.Scfld02_0      I 317 I 6
s caeJap4.Scaffold18213   390490 6 +   720316 --ccacaa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    180372 314 +   484378 I

a score=69194.000000
s ce10.chrX              2583261 322 + 17718866 -AGAAAAAGAGCAGTGCGCGAAAATATTCGA----GCGATCACATGGT-TATTGTT----TTCGGATTGGCAAAACGAATGTGAGTTATGGTGCAGCAAAGGAGAGACAGAGAGGGGGGTAAGAAAGCGAGGCGATGTCGA-GCGAAGAGGGTCACCCGCCCGTCACCTTTCTTCATCTTAAAGGAC-TTGG-GACGCGCAACACATACGCATACAGTGAGGAGGGGGGGGGGGGGGGGGCAGCCGCA------ATAAAAGGCACGTA----GCCTTCG-----------------GGAGACA--------GATCGTTTAGCCATTTCGATATGGATGCA-----GGTGCCAATGCACGAATAAAATGTGAGTGT
s caeRem4.Crem_Contig15   145623 306 -  1794024 -aagaaaagagcTGTGCGCGAATATGCATAACCAAACGATCACATGGT-TATTGATCGGTTTCGGATTGGCAA------TGTGAGTTATGGTGCA--------GAGA-------GGACATTAGACAGAGAGGCAATGTCAA-ACGACGAGGGTCAC---CCCGTCACCTTATTTCATCTTAAAGGACTTTGGAGGCGCGCAACGGAGACACATCGA------------------------CAGGCCaa------aaaaaCGACACGTATA-CACA--CGATCTATCTTGCTACTATGAAGGCAATCCAAGTGACCGTCTAGCCTATCCGATATGAATGCA---CGGACGGTTAGATGGGAagggaaatg------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    180686 314 +   484378 -agaaaatgagcaatgCGCGAAAATACGCAACAAAACGATCACATGGT-TATTGATCGGGTTCGGATTGGCAA--CGACTGTGAGTTATGGTgcagagagagggaga-------gggTATTAGACAGAGAGGCGATGTCGA-GCGAAGAGGGTCAC---CCCGTCACCTTCCTTCATCTCAAAGGACTTTGG-GGCGCGCAACACTGTCATATACA------------------------CACACGAATGCAGTAGGAGAGACACGTAGT-CATCTTCA-------------AGGTAAAAGCGATCCGACTGACCGTTTAGCCTATCCGATATAGATGCA---CGGACGCaaaaaaaaGACGGACAAGGAA----
i caeSp111.Scaffold582  I 314 C 0
s caePb3.Scfld02_0       3295536 305 -  4147112 -ATTAGAAGAGCAGTGCGGTAATATGCGCAG-AAGGCGATCACATGGT-TATTGATCGGGTTCGGATTGGCAA--CCAACATGAGTTATGGTGCAGA------GAGA-------GGGCATTAGACAGAGAGGCGATGTCAATGCGAAGAGGGTCAC---CCCGTCACCTTCCTTCATCTTAAAGGAC-TCGT-AGCGCGCAACACCGTCATATACA------------------------CAGCCAAA--------AAACGACACGTACG-CACATTCGTCTCCCCCGGCATTGTTGAAGGAGATCCGATTGACCGTTTAG-----CCGATATGGATGCA---CGGAAGGTGAGGAGAGGGAGAAAGGG------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   390496 278 +   720316 aaaaacaaaaagtgtgcGCGAAAAAGTGGCA-GGTGCGATCACATGGCATATTGATTGGTTGCGGATTGGGTA--------AGAGTTATGGTG----------GTGC-------GGACAGGAGA-----AGGAGACGTCGG---GGCGAGGGTCAC---CCCGTAGTCTTTCTTCATCTTGAAGGAC-TTGC-GCAACCGCTCGCCCATGCATAca------------------------cagcgaaa------aaaaaaggcacgCACGCCACTAGCA-------------ATGCCATGACTGTCT--TCGACCGTTTTGC--ATTAGATACAGATACAGCCAATACGATTGCGTGTGAGTGT-----------
i caeJap4.Scaffold18213 C 0 I 863
e cb4.chrX              17329877 2157 - 21540570 I

a score=4811.000000
s ce10.chrX              2583583 63 + 17718866 GTGCGTTTGTGTACAGGTGGGGTTGCATG-------TTGGCTAACGATGAGAAAAT------------GGG--GAT--GAGAAGGT-----
s caeRem4.Crem_Contig15   145929 57 -  1794024 -------------agagaaaggtTGCATGTAGATGGGGGGCTAACGATGAGAACAT------------GGG--AGG--GAAATGAT-----
i caeRem4.Crem_Contig15 C 0 I 103
s caeSp111.Scaffold582    181000 66 +   484378 ----------ATAGAAGAGAGGTTGCATTCGAA---ATGGCTAACGATGAGAAAAT------------GGGTTGAGttagaatgagaaaga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3295841 73 -  4147112 -------------GGAGAGAGGTTGCATTTCCA---ATAGCTAACGATGAGAAAACGGACAGGGAATGGGgttggg--aaaaagagaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I

a score=-289.000000
s ce10.chrX              2583646 8 + 17718866 AAAACTGT
s caeSp111.Scaffold582    181066 8 +   484378 gaaactgT
i caeSp111.Scaffold582  C 0 I 87
s caePb3.Scfld02_0       3295914 4 -  4147112 ggga----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeRem4.Crem_Contig15   145986 103 -  1794024 I

a score=-3665.000000
s ce10.chrX              2583654 491 + 17718866  
s caePb3.Scfld02_0       3295918 301 -  4147112  
i caePb3.Scfld02_0      C 0 I 86
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    181074  87 +   484378 I
e caeRem4.Crem_Contig15   145986 103 -  1794024 I

a score=0.000000
s ce10.chrX              2584145 5 + 17718866 ACCAA
e caePb3.Scfld02_0       3296219 86 -  4147112 I
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    181074 87 +   484378 I
e caeRem4.Crem_Contig15   145986 103 -  1794024 I

a score=191.000000
s ce10.chrX              2584150 2 + 17718866 AC
s caeRem4.Crem_Contig15   146089 2 -  1794024 ac
i caeRem4.Crem_Contig15 I 103 C 0
e caePb3.Scfld02_0       3296219 86 -  4147112 I
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I
e caeSp111.Scaffold582    181074 87 +   484378 I

a score=273.000000
s ce10.chrX              2584152 1 + 17718866 T
s caeRem4.Crem_Contig15   146091 1 -  1794024 t
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    181161 1 +   484378 t
i caeSp111.Scaffold582  I 87 C 0
e caePb3.Scfld02_0       3296219 86 -  4147112 I
e caeJap4.Scaffold18213   390774 863 +   720316 I
e cb4.chrX              17329877 2157 - 21540570 I

a score=22325.000000
s ce10.chrX              2584153 117 + 17718866 TTTTTTTTGTGCTC-AAAAACTGCGCAAAAACGTTTGCTCAAGTTGGAGACTAT---TGGGTCAGAAAGCCCAAGTT---------TTATTTGTTTTAGCAACCACCGTGAACTTTAAAAG--------AAAGAGTAT-------
s cb4.chrX              17332034 120 - 21540570 TTTCTTCTGTGTCC-AAAA-------------GTTTGCTCAAGTTGGAGACATTTTCTCGGTCAGAAATGCCAACCTCTAAACCGCTTGTTTGCCG----AACTACACTGAACTTTAAAGAAGCCTTGTAACAAACAC-------
i cb4.chrX              I 2157 C 0
s caeRem4.Crem_Contig15   146096 104 -  1794024 tctcttttgtgcAC-AAAA-------------GTTTACTTAAGTTGGAGACATT---TCGGTCAGAAAAGTCAAACC--------TTTGTTTGCCT-----ACGAAACTGAACTTTAAAAACGCC----AACAGGCGc-------
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    181162 116 +   484378 tttcttttgtgcACAAAAA-------------GTTTGCTCAAGTTGGAGACATT---TCGGTCAGAAAAGCCAAACC---GACAGTTTGTTTGCTT-----ACCACCCTGAACTTTAAAAACGCC-----ACAAGGACTGAggtt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3296219  86 -  4147112 I
e caeJap4.Scaffold18213   390774 863 +   720316 I

a score=-66388.000000
s ce10.chrX              2584270 253 + 17718866 ------TGTGCTTTTGCGAAAAAAAAAATAAAAGAAAACGACGAGAAAAAAGAAGTAAAAG--------TTTTTGTTAAACCGTTACTAATCCGT----TTTCATCATGTGATAAATTGACATCAAACATTGATA-----TTCTATAGCATATGTTTCTTTTCGAAAATAATCGCAGATTTTTG-ATATA----AC--ATTATTCAAGTATGACATTTAAATGAAG------AAAAATGAAC-----------ATAATAGCTAGAACGT-------GAAACGAGAA-T-------------------------------TTTGAAT-----------------------------------------------TCTA---------------------------------------------------GTTTTCTCT
s cb4.chrX              17332154 258 - 21540570 GAATTTCTTTCTCTGTCTCAGGTAAGTGCGGA----------------GGACTATCA-----------------------------CTAATCCCTCTCATGTGATATTTTGCTA-----ACATCAAACATTGCTCAGCGCTCTGAGA----------------AAAGGAGA----------TTT-ATATATCAAAATCTCTATTCAAGCATGACATTATAATGAGgc-----gaaaattataaaata------agaaagggaaaactga-------aaaacgagGGCT---ATGAGATAC---GGGGGGACGGAATA--TTCTTAA---------------------------------------GAGTTG--TATa------ttcataaaaacaaaaa-----------------------------atttaactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   146200 308 -  1794024 tgatttttgactcaatggaaaagaaatatgaaa-------caaaACAGGCAAAATCATTCG-------------CCTGATACACTTCTAATCCAT----TCTGATCTCGTGATA-----ATCTCTTATGTCCTTCGTCAAAATAAGAGT--------------GAGAGGGA----------TTT-ATGAA--------TTCATTCAACCAGAATATTTTAATGAGAA-----TAAagacaaaaagt-------tgaaaacaacaaatga-------aGCAGAAGAAAT---GTATGATATTTGAAAGGGAAGGTATAACTTTCtat---------------------------------------aatttgttttta------ttcacaaattagaaaatatttaaaaatctgGGGTCTGGGGTCAATGTGTTGCat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    181278 379 +   484378 -----tctgctttttttgaaaaagaaaagaaaa-------cgggagaagaagaaacatacGTAAGGATTTTCGTTCTGAACCGTTAATAATCCGT----TTTCATCATGTGATA----GGCGTATCATGTTATTC-TTATTTTAAGAATTTGCGTATGACGCAGAAAGGGA----------TTT-GTAAA----AA--GCAACTCGAGTATAATAATTTAATGAAACACACTAAGAATTAGAGATTATGATCGAGAAAAGGTGTAACGTGTGAAACAAAAgcagattttcaattttatacT--GAAACAAGGgtagt--tttgaatcaaatttAAGAAACACATGGAAATACGGAGTCAACATGGAATATCATTGTGAACTGTTCCATCAGCGGAAAAA-------------AGTCacttgaaagaaaattt---tt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3296305 191 -  4147112 ---------CGtgttttgaagaacaaaataaa---------tgtGAATCAAGAACTAGAAG------------------------AATAGTTTGT----ATTCGTTA------A----GACGAATAA---------------CAAAAATACGTCAATCCCATCAAGAGTAG----------TTCAGTGGA----AA--GTGACACGATTATaaag---taataaaa------aagaat---------------agaaaa-----------------aaaactagttct------------------------GCAGA--TCTGAAT---------------------------------------GATTTGGTAGTGAACAGTT-----------------------------------------------------
i caePb3.Scfld02_0      I 86 C 0
e caeJap4.Scaffold18213   390774 863 +   720316 I

a score=80454.000000
s ce10.chrX              2584523 182 + 17718866 AGAGTTAT-------------TCAATCGGAGTTTGAGGAAATGTGAAGAAATTTGCGGGCGGCTAGGTAGTCAATGATCTGAAAAATA-----ATTGTTAACAAAAAT------ATATAAACTGAATAAA--------ACCTTTTGTTTCAACATTTTTGCCGTTGCCTCTGGTATTGGGGATGATAATTTGAAGGTGATTTTCATCTG---AAAAT
s cb4.chrX              17332412 183 - 21540570 cgatcaat-------------tta-----aatttcaagAGATGTGAACATATTTTCGTGCTGCCAGATAGTCGAcaacctgaaaacaaaaagaatagTTTATGAAGACGA----AAACAAA-----CGAA-------TACCTTTTGTCTCAAGGTTTTTGCAGCGGCCTCCGGTATTGGTGTTGTTAGTTTGAAGGAGATTTTCATCtgtcaaataa
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig15   146508 201 -  1794024 aaattaataaaatgtTGTTAGTTaggaagattctgaagaaatgTGAAGGAACTTGCGGGCGGCGAGATAGTCGAtgacctgaaatt-------tttttttttgaaaaaca----agacaaAAT--GTAAACAATATCTACCttttgtttcaagtttttggtaGTTGCCTCCGGGACAGGCGACGTTAGTTTGAAATTTatcttcatctg---aaaaa
i caeRem4.Crem_Contig15 C 0 I 28
s caeSp111.Scaffold582    181657 189 +   484378 cgatttata------------tcaagaagaattagaagaaataTGGACGAATTTGCGGGCAGCAAGATAGTCGATGACctgaaaaacac----ttttttcatttgga-------aaacaaaGTCAACAAACAAAA--TACCTTTTGTCTCAATATTTTGGCTGTGGCCTCCGGAATTGGTGATGAGAGTTTGAAAGAgatttttatctg---aaaat
i caeSp111.Scaffold582  C 0 I 87
s caePb3.Scfld02_0       3296496 195 -  4147112 -GATTTATA------------TCAAGTAGAATTGGAAGAAATATGAACGAATTTACGGGCAGCAAGATAGTCGATGACCTGAAAAACAC----TCTTCttgtgaaaaacaatagaaacaaTGTCAACAAACAAAA--TACCTTTTGTCTCAAAACTTTTGCAGTGGCCTCCGGAATTGGGGTTGacaatttgaaagaaacttTGATCTG---GAAAT
i caePb3.Scfld02_0      C 0 I 196
s caeJap4.Scaffold18213   391637 184 +   720316 --AGAAATGA-----------TCAAAAGAATTCTGTTGTCACGTGAACAGATTTGCGAGCAGCTAGATAGTCAACAACCTGAAAATTCCC---TTTTATCGTTAGAATTCGGGCAAACAATCT--------------TACTTTTTGCTTTAaagcttgcgcatttttctcAGTGATAGGAGATGAAAGACGAAATGAGATTTTCATCTG---AAACa
i caeJap4.Scaffold18213 I 863 C 0

a score=214224.000000
s ce10.chrX              2584705 733 + 17718866  
s cb4.chrX              17332603 623 - 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15   146737 625 -  1794024  
i caeRem4.Crem_Contig15 I 28 I 11
s caeSp111.Scaffold582    181933 631 +   484378  
i caeSp111.Scaffold582  I 87 I 2
s caePb3.Scfld02_0       3296887 717 -  4147112  
i caePb3.Scfld02_0      I 196 I 535
s caeJap4.Scaffold18213   391821 616 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-1715.000000
s ce10.chrX              2585438 13 + 17718866 TGGAAAAATAGAA
s cb4.chrX              17333226  5 - 21540570 --------Caata
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   147373 13 -  1794024 TGAAAGATTAGAA
i caeRem4.Crem_Contig15 I 11 I 3
s caeSp111.Scaffold582    182566 11 +   484378 TTGGCAGTTAA--
i caeSp111.Scaffold582  I 2 C 0
s caeJap4.Scaffold18213   392437 11 +   720316 --GAAAAACAAAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3297604 535 -  4147112 I

a score=-6098.000000
s ce10.chrX              2585451  8 + 17718866 CATTTTCC----
s cb4.chrX              17333234  3 - 21540570 -----cat----
i cb4.chrX              I 3 I 434
s caeRem4.Crem_Contig15   147389  3 -  1794024 -----TGT----
i caeRem4.Crem_Contig15 I 3 I 2
s caeSp111.Scaffold582    182577  6 +   484378 --CCGTGT----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3298139  8 -  4147112 CATTTCGT----
i caePb3.Scfld02_0      I 535 C 0
s caeJap4.Scaffold18213   392448 11 +   720316 -GGTTTAAAAGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-3800.000000
s ce10.chrX              2585459 14 + 17718866 CCCTTTTGAAAATG
s caeRem4.Crem_Contig15   147394  2 -  1794024 ------TG------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    182583  9 +   484378 AGCTTTGAT-----
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3298147 14 -  4147112 AGCTTCTGTAAATG
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   392459 14 +   720316 GAATTCTAAACGTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17333237 434 - 21540570 I

a score=49906.000000
s ce10.chrX              2585473 281 + 17718866 --TCACTTTTGAACTGCAACTGGCTCATCTGCATAGTCGGCAGAATGAGGAA---------TTGGCTGATCAACTTGGAACGCAATTGGCGGGAGTGGCGGTGAATTTGATATTATATTGATTGGCTGGGGTGCCACTGCTGGAG---TTAATGGTG------------CACCT--GGAACATAAAT--AATTTAAGAGCAAACTATATTAATAGCATATCTACTCACTGAACGACGGT----GTGCACGATTCAACAATTTTCAGT---GCGAA----TAGAG-TTAG-GTAAAGTTTCATGGTTGAAA-TGAATTGAA--TAGAA--
s cb4.chrX              17333671 265 - 21540570 --TCACTTTTGAATATCCACCGGCTCATCTGCATAATCATGAGATTGTGGTA---------TTGGTTGATCCACTTGGAAGGCTATAGGCGGAAGTTGTGG---GCTGGATAATAATGTTATTGGTGGAGCAGCAGGTGGAAGAAGGGCTACTGGGG------------AACCTG-AAAATGACATT--AGGTtatgaataaaat--atttt------attatctCACTAATAGCAGGA----GTACAAGATTCTGCAACTCGGATTATGCAGAA----GATGA-AAAC-GTATAGTTTCATG---------GTATTG------AAA--
i cb4.chrX              I 434 C 0
s caeRem4.Crem_Contig15   147396 271 -  1794024 --TTACCTTTGTATATCCACGGGTTCATCTGAATAATCACGAGACTGTGGAA---------TTGGCTCGTCAACTTGGAATGCAATAGGAGGTAATTGTGG---ATTTGATAACAAGTTGATCGGTTGAGCAGCTGGTGGTGGAA---TCAATGGTG------------TTGCT--AAAAGAACAAG--CTGTTGTAGAGAAAATGAACTCA------GAAAACTTACAGAATGTTGGA----GTACATGAATCAACAGTTCGCAATAT-CAGAAACGCGATGA-AAACTATCATGTTGCAAG---------AAATTGTT--CAGAA--
i caeRem4.Crem_Contig15 C 0 I 1031
s caeSp111.Scaffold582    182599 262 +   484378 --ATACTTCTGAACGGCGATGGGCTCATCTGAGTAATCATTAGACTGCGGGA---------GTGGCTGATCCACCTGAAACGCCACTGGCGGTAATTGCGG---ATTTGAAATCAAGTTAATTGGTGGAGCAACATGCGGTGGTA---TTAACGGAG------------CACct--aaagaaacattttcaattg----aaagatGAG------------AGAGTGACTAACTGATGGAAGGTGTGCATGATTCAATGAATCTGATTATAGCAAT----CAACACTAAC-AA----TTTCATG------A-CAAATTGCA--AGAAA--
i caeSp111.Scaffold582  I 7 I 5
s caePb3.Scfld02_0       3298168 279 -  4147112 --GTACTTTTGAATGTTCACAGGCTCATCTGAATAATCATTTGTATGTGGAA---------TAGGCTGATCTACTTGAAAAGCAATTGGTGGTAGCTGTGG---ATTTGAAACCAAGTTGATCGGTGAAACAACCGGTGGTGGAA---TTATAGGAGCTGCTTTAATGTCAAAT--AAGAAAAtact---aattg----aaaaatacgTTCT-------CAAACATACCAATTGATGGA----GTACATGCTTCGATTAGCTTTATTAATGAGAG----GAGTA-TAAT-GATTGGTTTCATAGT----A-CAAAATGTATGAtaaa--
i caePb3.Scfld02_0      I 7 I 5
s caeJap4.Scaffold18213   392473 278 +   720316 TCCTACTTCTGAACACTGACAGGCTCTTCTACGTAATCATCACTGTGAGGAACAACTGGACTTTCATTATCCAATTGAAAAGAAATTGGTGGCAATTGTGg---gtttgagatcaaatttatCGGTTGAGCATCTGGCACCGGTA---TCAAAGGAG------------CACCTGTGAACAAACATA--TGAATT----CCCCATGCACTTT------TTAAACTGACTTATCGATGGA----GTGCATGATTGTGAAACTTTGAAC---AAGAC----AAAGA-TCAA-GAAATATTTCATg------attaaaatgaa--aaacaga
i caeJap4.Scaffold18213 C 0 C 0

a score=-1932.000000
s ce10.chrX              2585754 13 + 17718866 TCGAATTTCAAAT
s cb4.chrX              17333936 13 - 21540570 ATGTCTCTTAAAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    182866  8 +   484378 ACGAATAT-----
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3298452  6 -  4147112 atgaat-------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   392751 13 +   720316 TTGAACTTAAAAT
i caeJap4.Scaffold18213 C 0 I 3982
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=-2459.000000
s ce10.chrX              2585767 39 + 17718866 GATTAATTTCATATATTTGT----ATTGATATGACTATACATT--
s cb4.chrX              17333949 39 - 21540570 GATGAATTGTGGTTACGAGT----ACTGTTATGATTTCATACT--
i cb4.chrX              C 0 I 1674
s caeSp111.Scaffold582    182874 37 +   484378 -ATGAGTTCAAGTTGTGTAT-------GTAGTAAAACTATAGTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3298458 39 -  4147112 ------ttcaaattatttgtaACAACAATGGTTGAACCATAGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=2009.000000
s ce10.chrX              2585806 29 + 17718866 TTCTCGTACAAATATTGATGCAATGCAAA
s caeSp111.Scaffold582    182911 24 +   484378 TTCT-----ATTTATTAGCATGACACAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3298497 24 -  4147112 TACT-----ATATATTGGTTTGACACAAA
i caePb3.Scfld02_0      C 0 I 1037
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=116.000000
s ce10.chrX              2585835 10 + 17718866 ATTTACAAGT
s caeSp111.Scaffold582    182935 10 +   484378 TATTATGAAT
i caeSp111.Scaffold582  C 0 I 330
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=0.000000
s ce10.chrX              2585845 1083 + 17718866  
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeSp111.Scaffold582    182945  330 +   484378 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=3299.000000
s ce10.chrX              2586928 126 + 17718866 ACCCTTGCTCATTATACATTCAACACTGACTCTA-TTTGAAACAAAAGA-------CACGCATTTTGAAAATTACCAACCTCGGCGTTTAGTGGGAAGTGACCTTTCACCAATCTGCATTCTGTCATCATTTTT
s caeSp111.Scaffold582    183275 131 +   484378 ACACATCCTCATTATTCATTCAGTGC-GACTCCGCTTTCGAACGAGAGAACATTTACATGCATTTCAAGGATTACCAACGTCTCTGTTCGATGTCTATTGACCTATCgtcgattttc--tttttcactgttttt
i caeSp111.Scaffold582  I 330 I 470
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=0.000000
s ce10.chrX              2587054 891 + 17718866  
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeSp111.Scaffold582    183406 470 +   484378 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=536.000000
s ce10.chrX              2587945 78 + 17718866 ATTTGCCTCCAACTACAACTAAAAATCAATTTCTTTTATCTCATTCATAACGGTTTCGAATTTGAATTTAACTTGCGT
s caeSp111.Scaffold582    183876 67 +   484378 ATCTGTCTACTTCTCCACTTGAAAcatgaattctctt------ttcatgaCAGATTCCAAACGTGGTCAAA-----GT
i caeSp111.Scaffold582  I 470 C 0
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I
e caeRem4.Crem_Contig15   147667 1031 -  1794024 I

a score=899.000000
s ce10.chrX              2588023 17 + 17718866 GCACTC--TATTCCACTTT
s caeRem4.Crem_Contig15   148698 17 -  1794024 GTACGT--TATTCCATTTC
i caeRem4.Crem_Contig15 I 1031 C 0
s caeSp111.Scaffold582    183943 16 +   484378 --ACTTCCCATTCCATTT-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3298521 1037 -  4147112 I
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I

a score=-1489.000000
s ce10.chrX              2588040 8 + 17718866 GATT-CTAA
s caeRem4.Crem_Contig15   148715 4 -  1794024 gatt-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    183959 3 +   484378 -----CTA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299558 8 -  4147112 gatttcca-
i caePb3.Scfld02_0      I 1037 C 0
e caeJap4.Scaffold18213   392764 3982 +   720316 I
e cb4.chrX              17333988 1674 - 21540570 I

a score=16983.000000
s ce10.chrX              2588048 61 + 17718866 TTCCTAA-ACTTTCACCGTCTTCAA--------CCAT-TC-TTTTGAGAGA------CTTTGAATATTTC----AATAGGCG
s cb4.chrX              17335662 72 - 21540570 tcccaAA-ACTTTCACTGCATTTCGCTTCGTTTTGat-catttca------atttctttc--aatATTCTCCAATGTAGGTG
i cb4.chrX              I 1674 C 0
s caeRem4.Crem_Contig15   148719 75 -  1794024 -tctaaa-actttcacTATTTCCAAGTTCTTTTCCAC-ACGCTTAGAGAGGACttctttctgaatatttc----tATAGGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    183962 78 +   484378 TTTCCAATACTTTCACCACTTCCAAGTTCTTTTCCACGGCGTTTTGAGAGAATTTCACTTTGAATATTTC----CATCGGTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299566 72 -  4147112 tttcaaa-actttcaccACTTCCAAGTTCTTTTCCAC-GCGATTTGAGAGAATTTCACT----ATATTTC----TATAGGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   392764 3982 +   720316 I

a score=46156.000000
s ce10.chrX              2588109 73 + 17718866 GTCGTAATTGGATAGAA--TCTTTTGAATCTTCTCTACCAAGGTCGAATTGTCTTGAGGTACAATTTACTGGCCA--
s cb4.chrX              17335734 70 - 21540570 GTCGTAATTGGATAGAGAATCTTTTGAATCGTC-CAACCAAGGTCGCTTCGCTTCTAGATACAATTTAGTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   148794 67 -  1794024 GTCGTAATTGGATAGAA---TCTTTGAATAGTC---GCCAAGGTCACATTGTCTTGAGGTACAATTTACTATC----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    184040 67 +   484378 GTCGTAATTGAATAGAA---TCATTGAATCGCT---ACCAAGGTCGAATTGTCTTGAGGTACAATTTACTGGC----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299638 67 -  4147112 GTCGTAATTGGATAGAA---TCTTTGAATCGTC---ACCAAGGTCGAATTGTCTTGAGGTAAAATTTACTGGC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   396746 61 +   720316 GTAGTAATTGGATAGAA-----------TTTCC---ACCAAGGTCAATTAATCTTGAGGTACACTCTGCTGCC--TA
i caeJap4.Scaffold18213 I 3982 I 1100

a score=-4360.000000
s ce10.chrX              2588182 48 + 17718866 GTGGGCACCAGGACTACACGCAGTTTCTCT-------------TTCAATGTTATTTCAATG----------------------
s cb4.chrX              17335804 29 - 21540570 ------GTCAGAACAAC--------------------------TTCTATAGTTTCTCAATG----------------------
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   148861 53 -  1794024 -----CACCAGAACAACAT-TACTTTgaccaaatcaaa--aaattcaatagtATTTCAGTG----------------------
i caeRem4.Crem_Contig15 C 0 I 53
s caeSp111.Scaffold582    184107 76 +   484378 -----CACCAGAACAACAT-TAATTTGACCATACTGAGATAAATTCAAcagtttctcgaaaatttttttgt-ttgttttcaca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299705 71 -  4147112 -----CACCAGAACAACAT-TAGTTTTG----ACTGAA--TAGTTGACCAATGTTTCCGTAACTATTCTGTATAGTTTTAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I

a score=-2153.000000
s ce10.chrX              2588230 28 + 17718866 TTTGGTT------------ATGTTCAGGGTGGAAACTAAT
s cb4.chrX              17335855 23 - 21540570 TTTGGTT-------------TGAATAGGAAAGAGAC----
i cb4.chrX              I 22 C 0
s caeSp111.Scaffold582    184183 25 +   484378 TTTTATT------------ACAAACAAGGAAGTTATT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299776 37 -  4147112 TTTAGTTtaggaggaagagaagaagaggaagaccATG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e caeRem4.Crem_Contig15   148914 53 -  1794024 I

a score=15732.000000
s ce10.chrX              2588258 149 + 17718866 TTCCTAATATTAACTTGAATTATGTCGCAATAGTTGTTGAACCAATTGTATACATATACAATACAATAAACTGAACTGCAGTTCAAACAAATGACATTTCCAATTTCAATAGTTTGTCTGCCGGCATTGC--TATTGATCTCTGCCATAAA--
s cb4.chrX              17335878  90 - 21540570 ACCCCCATATTAGCTCAAATTTCGCT---------------------------------------------TGTACTATagttcaaacatt------------ttgaaatgtgTTGTT--TCGGTATTTC--TATTGATCTTTGTTGTAAA--
i cb4.chrX              C 0 I 2906
s caeRem4.Crem_Contig15   148967 128 -  1794024 TTCTCAATATTAGCTCAAATTACTTTGTA--------TCATATACACATATA----TCGAATAAAACAAACTGAACTACAGTTCAAATATCTA-----TTTCATCTAAATACAATG----TCAAACTTTC--TATTGATCTATGTCGCAAA--
i caeRem4.Crem_Contig15 I 53 C 0
s caeSp111.Scaffold582    184208 128 +   484378 TATATAATA--AGCTGAAATTATATGTCA--------TCCAACATGCATATGTACATAGTATGGAATGAACTGAACTGCAGTTCAAATATCGA-----Taca-----aatagttt-----tcaattttcccaCATTGATCTCTGTCACACAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299813 120 -  4147112 TTCTCAATATTAGCTCAAATTACGTTGTA--------TGAAACATGCACAAG-------------ACAAACTGAACTACAGTTCAAATAACTA-----TTCA-TTGTAGCAGTTTG----TCGATGTTTC--TATTGATCTATGtaataaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I

a score=4137.000000
s ce10.chrX              2588407 8 + 17718866 GTTCAATA
s caeRem4.Crem_Contig15   149095 8 -  1794024 GTTCAACA
i caeRem4.Crem_Contig15 C 0 I 367
s caeSp111.Scaffold582    184336 8 +   484378 GTTCAACA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3299933 8 -  4147112 gttcaaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=-5220.000000
s ce10.chrX              2588415 137 + 17718866 CACATAGTCTTCTCCAACAACTCGTTTTCAATTGCT---ATTGATTTTTTAGTC--GCAAAA--------------CAATGTTT-------------------------------TAATTGAATGTGAACTTTGTGGTTTT---TGTCTACAATTTC-----------------------TTTGGTCAAAAGTCAAAAAAAGCGTTTTTCATT------
s caeSp111.Scaffold582    184344 125 +   484378 GGTG-----------AAAAACTAGTTCTGAATCAAATGTATTGatattttccttcaattGAG--------------TCgtatttttcgag-------------------------tttttgcAAATG-TTTCAGTGATATT---AGTATA-AGgttc----------------------------tcaaaaattaaga-----gtttttcttt------
i caeSp111.Scaffold582  C 0 I 146
s caePb3.Scfld02_0       3299941 197 -  4147112 gGTG------------AAAACTAGtttcatatcaaa---attgaTATGTTGTTTCAACTAGGGAAGGGTCATATTTTATTGTTTATcaaagaaaaacgatgaaaaggGATAATCTCATCTGAAAGaa-attcaatggttttttgaatttt-agtttcATGGCATTAAATTGCCGAAGAAATTTGGTCAAAAGTCAACA-----AATTcagtttcttatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeRem4.Crem_Contig15   149103 367 -  1794024 I

a score=549.000000
s ce10.chrX              2588552 72 + 17718866 TTA-TCAGTTATCCAAATATCACTATCAGTAACATTTGACGGTTTATTTTTTTATTTATCACGATTTTTTTTT
s caePb3.Scfld02_0       3300138 68 -  4147112 aaatttaaTTCCCCCA--ACCGTTAtcagt---atttttcagtattactctctttttttcgaaattctttctt
i caePb3.Scfld02_0      C 0 I 90
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeSp111.Scaffold582    184469 146 +   484378 I
e caeRem4.Crem_Contig15   149103 367 -  1794024 I

a score=0.000000
s ce10.chrX              2588624 539 + 17718866  
e caePb3.Scfld02_0       3300206  90 -  4147112 I
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeSp111.Scaffold582    184469 146 +   484378 I
e caeRem4.Crem_Contig15   149103 367 -  1794024 I

a score=84.000000
s ce10.chrX              2589163 28 + 17718866 TGTTCTCCAATTAAATTAGATACCGTGT
s caeSp111.Scaffold582    184615 28 +   484378 TGTCCGCCACACTAATATAAAACCAAAA
i caeSp111.Scaffold582  I 146 C 0
e caePb3.Scfld02_0       3300206 90 -  4147112 I
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeRem4.Crem_Contig15   149103 367 -  1794024 I

a score=1194.000000
s ce10.chrX              2589191 23 + 17718866 CAATAAAATTGGAACAAAAACGC
s caeRem4.Crem_Contig15   149470 23 -  1794024 caaaaaagttgtgtccAACTCAT
i caeRem4.Crem_Contig15 I 367 C 0
s caeSp111.Scaffold582    184643 23 +   484378 CACAGAAATTGTAATGCACATac
i caeSp111.Scaffold582  C 0 I 3
e caePb3.Scfld02_0       3300206 90 -  4147112 I
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=6639.000000
s ce10.chrX              2589214 37 + 17718866 AAAAC-ACCGTTTTAAATGTGTGAGTCTTGAATCT---CTG
s caeRem4.Crem_Contig15   149493 38 -  1794024 -AAACAAAGTCTTAAAAGGTGCgaatcttctttct--cttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    184669 41 +   484378 aaaacaaagatttaAAAGGTGCGAATCTGCATTCTCACCTT
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3300296 40 -  4147112 AAAAC-AAGGTCTTAAAGGTGAGAATCTTCGTTCTCACTCA
i caePb3.Scfld02_0      I 90 C 0
e caeJap4.Scaffold18213   396807 1100 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=70301.000000
s ce10.chrX              2589251 222 + 17718866 CTCTTTTTTTGTTT--TCCCAGAGAT---------------GTTTTTTTCTTTCGATAAAGC-GTTTGCAAGCCTTTTTCCTCGTCGTCTTCCCAAATTAAGTGTCGAGACTCTAATCCTCGCGGGCTTTCGTAGTGTTTCCATTTTCCGCCATTGCATTGAGCACAGCACTCAATAC---GCTTTCTTGTACATGTAT--ATGCGC--------TCCAGGCA----------CATTTGTGTTCAAATTACACG-TCTGCCTCT
s caeRem4.Crem_Contig15   149531 213 -  1794024 ctttctcattgtTTT-TGTCATACAT---------------GTTCGTTGTGTT-TGCAAAGC-GTTCGCATGTTgttttcctt-ccttcttcccaaATTAAGTGTCGAGTGCCTAATCCTCCAGCGTTCTCTtggtgtttcttttttt----------tcgagcaCAGCACTCAATAT---TCTTTCTTGTACACACATTGATGCTC--------CGGAGACT----------CATTTATGTTAGATTTAGACG-CCTGCGTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    184710 222 +   484378 CTTTCTGCGTGTTTT-TCTCTCACAC---------------CGTTGTCATTTTGTTCCAATC-TTTTGcaagttgtttttctt-ccgtCTTTCCAAATTAAGTGTCGAATGCCTAATCCTCCAGTGTATTCTTagtgtttcctttttccgcCCTGGGAATGAGCACAGCACTCAATAC---GCTTTCTTGTATACACAC--CCTCTC--------GGAGGGCT----------CATTTATGTTCCAATTACACG-TCTGCGTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3300336 220 -  4147112 GTTGTTCgttgttccatttttcctaT---------------GGTTGTCA-----CTCCAATCGTTTTgcaagttgtttttctt-cctccttccCAAATTAAGTGTCGAGAGCCTAATCCTCCAGCGTTTTCCCAGTGTTTCCTTTTTCCGCCTTGGCATTGAGCACAACACTCACTAC---TCTTTCTTGTACACACAT--GCTCGG--------AAAAGGCT----------CATTTATGTTCGAATTACTCACTCTGCGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   397907 248 +   720316 cttttttttttcttt-cctgcAACATATTTCACTTTTTATCGTTCTTCCTTTTGATTCAAT--GTTTGCGAGTTGTTT--CTG-CCACCTTTCCAAATTGAGTGTCTTGTGCCTAATTCTCCAGCTTTCTCTCAGTATTTCAATCTCC-------GCAGAGAATCAAGCACTTTATACGCTGCTTTCTTGTATACACAC--ATACGCATACACATTCAGGGTTGCCACCCAAACATATATGTTCGAATCGCACG-TCTGTGTCT
i caeJap4.Scaffold18213 I 1100 I 2668
e cb4.chrX              17335968 2906 - 21540570 I

a score=-3632.000000
s ce10.chrX              2589473  7 + 17718866 T--GCCATT--------
s caeRem4.Crem_Contig15   149744  7 -  1794024 T--TTCGAT--------
i caeRem4.Crem_Contig15 C 0 I 23
s caeSp111.Scaffold582    184932 17 +   484378 TAGGTCGAGAGACGGTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3300556 17 -  4147112 TAGATCAAGAGTGAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=9.000000
s ce10.chrX              2589480 26 + 17718866 GAC--AG-ATGCACTATTAGGTTCTC----------------------------------------CGT
s caeSp111.Scaffold582    184949 67 +   484378 GAC--AGTGTGCCCTATTAGGTTCATTCACCAGTCGATATCTTGTTTCCTCCTTGCATTTGAAAtatgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3300573 46 -  4147112 GACTGTGTGTGCACTATTCGGCtcat-------------tttcgtttctttcttAC----------TGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeRem4.Crem_Contig15   149751 23 -  1794024 I

a score=-22568.000000
s ce10.chrX              2589506 358 + 17718866  
s caeRem4.Crem_Contig15   149774 442 -  1794024  
i caeRem4.Crem_Contig15 I 23 C 0
s caeSp111.Scaffold582    185016 467 +   484378  
i caeSp111.Scaffold582  C 0 I 114
s caePb3.Scfld02_0       3300619 498 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=-2773.000000
s ce10.chrX              2589864 105 + 17718866 GTATGTCGTGTTTT----GATATTTTTTATGATTATGGTTCAATTTAATTTGAA-TGCCATGATATT----------------TAATGA---TAAGCCG-TTGTGAATAATGTTTACACAATAC-------------GTGAGT--
s caeRem4.Crem_Contig15   150216 134 -  1794024 ATATTGctctttttgcagaaaatttccTTCCCTTTTGAAGAA-----ATTAGAATTGCCATTAAAAA-----CGTAGTTCTAGCAATGGCATTGAACCATTTTATGGGAAATCCTATA-ATTAAAAGTCGAAAGAATGCGGAATA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3301117 126 -  4147112 TTATTTCACGCTTCAGGAGCAACCTTTGATCTTTCTAACGCG--TTTATTGGAATTgccatgaaaaagaaagagtagTTCTAGCAATGAAACTGATCCA-TCGAAGTAAACGCCTATA-ATTAA-------------GTGggt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeSp111.Scaffold582    185483 114 +   484378 I

a score=-21097.000000
s ce10.chrX              2589969 121 + 17718866 --------------------------TTATTTTAGAAAAAAAAA-------CGAGATTTT----------TCAAAG-----AAAAAAGAAAAAAAAACAAT--------TCA----AAAATTG-------AATTTGGC--AATTT------GATAGCCTTATTTAAAACTTCA-----------------ATACTTATTAttaaaattgtagt------------------------
s caeRem4.Crem_Contig15   150350 137 -  1794024 -------------------------GAATTATAAGAATGAAATAGATTGTGTGACGtttgttcctttt--ttattggtagtgaaaaaagaactGGAATAGG--------TTA--TGAGAAGTTTCAAGG-----------GGTACGTCCAAAACTGTTGTATTTAGACT---------------------AAAAGTACT-------TTGTAGT------------------------
i caeRem4.Crem_Contig15 C 0 I 56
s caeSp111.Scaffold582    185597 187 +   484378 tgattaaagaaaaagaaaagagaaaaaaactgaagaataGAATAGGT--TCtgacgtttttttctgtttcccacca-----gagaaaaaatcgagaataCATTTCACATTGAGGTGAGAGTTCTCATATCGAATTGCTTCAGTAT------GACtgctttctctgaaattctc-------------------------------------agtttcattttctattcagcTCACTTT
i caeSp111.Scaffold582  I 114 C 0
s caePb3.Scfld02_0       3301243 179 -  4147112 ----------------gaagaatgagaaatggaagaatg------------tgACGTTTT----------CCATCA-----TACGGAAAATCTGGAACACA-TCCATATTCA----CTAGATGTCATAATAACTTGCT--AGTTTCCTCCAAACcgccttttttgaattttttttagaatttattacaaaataaggatt-------ttgaagttttgcgTTCT-TCCAAAGAATTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=-2987.000000
s ce10.chrX              2590090 47 + 17718866 agcaccaatgg--------------ggaaatagtttaaaactactcctatcgtgccaaaat
s caeSp111.Scaffold582    185784 40 +   484378 TGt----------------ccttttgaaaacaacttttGTGTCTTATTATCAAGTA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3301422 61 -  4147112 TGCAATAATTGCCAATCCAcctcttatgaaaaaattgagtttataCTTAGCAGACACAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeRem4.Crem_Contig15   150487 56 -  1794024 I

a score=-43848.000000
s ce10.chrX              2590137 337 + 17718866  
s caeRem4.Crem_Contig15   150543 317 -  1794024  
i caeRem4.Crem_Contig15 I 56 C 0
s caeSp111.Scaffold582    185824 369 +   484378  
i caeSp111.Scaffold582  C 0 I 156
s caePb3.Scfld02_0       3301483 475 -  4147112  
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=-9241.000000
s ce10.chrX              2590474 152 + 17718866 TTAGATTTTAAATTTTAAAGGTGGAGTAATGCTATTTGGTATTTTGagcaatgtcgcattttccgaccccagaatgtttca---gcccaaataattaaaacaaaaaaaacataaaaattgtagaa--------aaaacattactttttt---tgctcTGTACTTTT-----------
s caeRem4.Crem_Contig15   150860  96 -  1794024 -----------------------------------TTGGTTTATTAGAAACAATCTAA----------CTGGTCCGTGTCACTGACT---------------GACGTGACTTGTACTTTGTAGTAAAT-----AAAACTGAAtctttga----------tactttttatca------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3301974 124 -  4147112 -------------------------------------------ttaaaaaatattcaa----------acataATGTTTCAGAAGCTTCATTTTTTAGGTTGAACGATCTTAGGAATCTTTGATATCTTTGCCAAAAAGGTATATTAGGAAGCTTTCTTTGCTTTCTTGCAACTTAT
i caePb3.Scfld02_0      I 16 I 25
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I
e caeSp111.Scaffold582    186193 156 +   484378 I

a score=13697.000000
s ce10.chrX              2590626 184 + 17718866 AGATCAAAAATCAAATTCAGATTTTTTCATTTTT-TCCAGCGTATGTATTGT--TTCA--ATCCCTA-------CGCCGTTTCCAATACAACCGT-AAAGGTTATAATTTG---A--GAGA-----ACAGATCGATCTTTCATTTTTGTCTTGTTTCACACATTTC--ATCTTTTTTCCGGGATGAGAAGAGATA-TTCATAAGCATCCG-------------
s caeRem4.Crem_Contig15   150956 185 -  1794024 AGACCAAAAGTCAA--TCATATTTGTTTATATCT-TT------TTCTCGTGTTATTCA--AGTCCCT-------CA-CTATCCAAATATAAACATAAAAAGATACAATCGACGCATCGAGATCCTTCCCTATTG---tgtccttttttattttgttcacactt-----tttcttttttcgggaaaaga--------TTTCTGGGTAGGCTGAGAGAAA---CC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    186349 194 +   484378 agatcaaaattcaa----atatggAT--ATGTTTATC------TCTTCCTGCTGTTCAT-ATCCCCCTTTCTCTTG-TATTCCGTATACAAATAT---AGGCTACAATCGATGCA--GAGATCC--TCCTATTG---Tgtcc-tttttgtttctttcacacatttca-ttttctttttcgggaagaagaagaagatttgtAGGGTATTCACCGAGAAA---Cc
i caeSp111.Scaffold582  I 156 C 0
s caePb3.Scfld02_0       3302123 190 -  4147112 Cgatcaaaattcga----atattcatAAATGTTT-TC------ACTTATTGTTGTTCGTCAGCCCCC-------CG-TATTTCAAATACAAATAT-ACAGGATACAATCGATGCA--GATA-----TCCTATTg---tgtccttttttgtttctttcacacatttcctttttctttttcgggaagAGAATGAA---TCCGAGAGAATGCTGCGAGAAACCCcc
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17335968 2906 - 21540570 I

a score=18163.000000
s ce10.chrX              2590810 53 + 17718866 CGAGAAAAAATAATTACGAATCTACAA---GAAAAATCCGGTTTG--CGAGAAGACGA---
s cb4.chrX              17338874 56 - 21540570 cgagaaaaaataattacaaATCATTGAAAAGGAAAACCGGTTCCA--CACgcagatga---
i cb4.chrX              I 2906 I 47
s caeRem4.Crem_Contig15   151141 51 -  1794024 cgggaaaaaataattacgaATCTTT-----GGGGAACCGGTTCTT--TGACGAGATGG---
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    186543 57 +   484378 tgggaaaaaataattacgactctttc----gaaaaaccggttttttgTGACGAAGTGGCGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3302313 55 -  4147112 cgagaaaaaataattacgaatctttg----aaaaaaccggTTATC--TAACAAAGTGGAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I

a score=4052.000000
s ce10.chrX              2590863 46 + 17718866 GCGAGGGTTCCCTAGTTC-----TTCTCTACAAACTGTTGGA--AAACTTGGG
s caeRem4.Crem_Contig15   151195 44 -  1794024 TCGAGAGTGAAATAGGCGGAAGGTTCCATAGAAACaacttcaaa---------
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    186600 42 +   484378 TCGAGAATGAAATAGGCATGTGGTTCCATTGAAACAATTcta-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3302368 42 -  4147112 TCGAGAGTGGAATTGGCAGAAGGTTCCATAGAAACAAttcta-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I
e cb4.chrX              17338930 47 - 21540570 I

a score=-1173.000000
s ce10.chrX              2590909 162 + 17718866 CAGGGAGGGGGGA-------------------------GAAATA-GAGAAGAATGAAGGTCGGAA-GA-----------CCCCCATTAA-----ATAGTGAT--TGGGCAGTTAAGATTATGATGACAGTTCTCT----TTAACCTGGCGTCACATGGGAGGATTGAA-------------------------GTCAGTCAG-------TCTTTT----CCAGTTTTCGCCATGAACTTTTTCCCGT
s cb4.chrX              17338977 208 - 21540570 cagagaggaaagaaaatagagaaagagattgagagaatgaaata-aaatagagtaaaggttaaaa-gGCGCGGCGCATACAGtcgtgaaatttcaaactgat--tGGGTAGTTTGG--------Ggcaatttttcgag-------------------agaaaatcTAAAGACATTTCGGAACATAAttagccaatttttccaagaatattctttttt--taaaatt------aacatttttgtgtct
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig15   151239 186 -  1794024 ----------------------gaaaaattg------tcaaaga-acaaagatttgaaaaaagaa-gg-----------caGTCATAAAG----ATACTGAT--TGGATACTTTAGTTTATAATGACAGTTTTCAGAG-TGACT----CGTGTTTCATGAGGATTGCATGATGAGTAGGGAGGGGTCTATccgattttttcg-------tttttttt--tctgtttctttgaaGAACTTTTGTGTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    186642 172 +   484378 --------------------------------------gagaaatgaaaagaacaaagGTTAAAAGGA-----------CAGTAATAAAG----ATACTGAT--GAGATCGTTTAGTAGTAAATGACAGTTTCCGAATATCACT----TGTGTCATAGAAGGATTGTA-------TCAGGAGGCATCTTGcctgttcttttt-------tctttttc--tccgattcTTTGAAGAACTTTTGTGTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3302410 138 -  4147112 --------------------------------------gtgaaa-aaaaagaacgaaggTTGAAA-GA-----------GAGTCATAAAA----ATACTGATGGGGGATACTTTAGACAGTAATGACACTTTTCAAAC-TAACTCCAATATGTCA----------------------------------------------T-------CCTTTCTCAGTCAGATTCTTTGAAGAACTTTTGTGTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   398155 2668 +   720316 I

a score=37856.000000
s ce10.chrX              2591071 166 + 17718866 AT---------GAAGAGGATGCCGAA---AAAAGAAACATGAAGAGAGAATA--AAAAAGACACCCGGAGAAAAGAGACTGTGTTTTT--------CATTCG--CTTTTCCTTCTTTTTTTCCTTTTTTGG------CCCACC------CGCGTCAAGTATTAGTGCATCAGAAACCAT-GTCTTTTGTGT-CCTT-TCCT-TTTC------------------------
s cb4.chrX              17339185 159 - 21540570 tcttgTG----ATTTGGAATGCCCGG---TCGT--ATTTGAGAGACATAATA--AAGC--------GGA-----AACACTGTGCTTTTCGTCCCCACCCCAGTACTTTCTCC------------TTTTTAG------CCCGCC----CGCGCGTCAAGTATTAGTGGATCAAAAACCGTTGTCCTTATCGTGCCTTATCCA-TTTC------------------------
i cb4.chrX              C 0 I 229
s caeRem4.Crem_Contig15   151425 134 -  1794024 TC---------GGTCGGAATGCCGAA---------AGtgggaagaaatgaag--agaa--------gaaaagacaaGACTGTGTTTTT--------CCCTgg--ctttctcc------------ttttttg------cccACC----CCCACGTCAAGTATTAGTGGATCAAAAACCGT----------GT-CCTtatcca-tttc------------------------
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    186814 141 +   484378 TC---------GGACGGGAAGACTGC---CCCGAAAATGAGGAGAAgtgaatggagaa--------gaaaagaagagactgTGTTTTT--------CATTgg--cttttccc------------ttttttg------ccCACC------CGCGTCAAGTATTAACGAATCAAAGACCGT----------GT-CCTTAtccattttc------------------------
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3302548 146 -  4147112 TC---------GGGCGGGATGACGGAATGccgaaaaagggaaagaaatgGAT--AGAA--------GAAAAGACAAGACTGTGttttt--------cattag--ctttttcccttt-------tttttttg------cccacC------CGCGTCAAGTATTAGTGAATCAAAAACCGT----------GT-CCTTATcca-tttc------------------------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   400823 176 +   720316 ----atgaaaaagatgaaaagacagc-------agaaggcaaaaaaaagaga--agaa--------aagaaCACATcgctttgttttg--------ttttgt--cctctttt-----------tttttttggaatttcctATCGTTTTCTCTACAAAGTGTTAGTGAATCAAAAACCGC----------GT-CCTTATCCA-TTTTTATTTCGTATGATCTGATCTTCTT
i caeJap4.Scaffold18213 I 2668 C 0

a score=-21977.000000
s ce10.chrX              2591237 147 + 17718866 ---CACAACTGATCGATTTTATCTCCCAATCGGA-----AGAAGT-TGTCACATCATCT---------------------TCTGTCTTATTGAAATCCCTGGTAATTTTTGTTTTTTTATTTGATTT-AAAGTTG----AT--CTTGG----AGAAAAGTCGAATCCTGATTTTTTAA--AAAAGTG----------------------------------GCT
s caeRem4.Crem_Contig15   151564 201 -  1794024 -----c-attcatct-TTTTATCTTCACATCTTGATATTATGTGTCTaccgtgttttttctttcag-----------ttctttttcttcttgatgttcagaagaaactaaattttttgaccgtcttttcTAGTCACTGAATCACTTTCTTACTGACATTTC--ACCTTGACTACTC-A--ATCGGTACAGTCTTTGAAGATAACTATCAAACTTCctcatgaat
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    186961 120 +   484378 -----tgatCCtttt-ttttATCTTCCCATCTCA-----ACGAGtttacca-----------------------------atttttttggtgatgTCCAGGG----TGTCCTCTTTTCACCATTTTTCATAGTTACTAAAT--CATTC----GGTCATTTC--ACCTTG----------------------------------------------------GCT
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3302700 128 -  4147112 -------attcatCT-TTTTATCTTCTCATCTCA-----ACATGTCTaccgtgtttttt------------------ttctttttcttcttgatgtcCAGAA--ACTGTATTTCTTTTGCAAG-----AAAATTATCTCGT--CATTC------TAAATTC--ACCTTGAGTA------------------------------------------------ATT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   400999 149 +   720316 TGAAGCGATCCTT---TTTTATCTCCatgtttcc---------gttttccgacttttcTGTCATTGAAAAAGACGCAATCATTTCATTTCtgaccttt--------ttttcttttttttctgtattgtAGAG-------AT--CGATC----------TCA--ACCTTGATTCTTTAATCGCAAATG----------------------------------ACT
i caeJap4.Scaffold18213 C 0 I 32
e cb4.chrX              17339344 229 - 21540570 I

a score=-140.000000
s ce10.chrX              2591384 16 + 17718866 TATTCAAATTTAAAAT-----
s caeRem4.Crem_Contig15   151765 21 -  1794024 tttttgaaaagaaattagtCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    187081 16 +   484378 TGTTCTAACTTAAAAT-----
i caeSp111.Scaffold582  C 0 I 51
s caePb3.Scfld02_0       3302828 16 -  4147112 TCTTTCAAGTTCACAC-----
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   401148 32 +   720316 I
e cb4.chrX              17339344 229 - 21540570 I

a score=-1422.000000
s ce10.chrX              2591400 15 + 17718866 TCCGTAGAGTA-----AAAA
s caeRem4.Crem_Contig15   151786  4 -  1794024 ----------------TCTA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3302845 20 -  4147112 TTTGAAGATTATTATCTTGA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213   401148 32 +   720316 I
e cb4.chrX              17339344 229 - 21540570 I
e caeSp111.Scaffold582    187097 51 +   484378 I

a score=-425.000000
s ce10.chrX              2591415 9 + 17718866 TTGCGAGGA
s caeRem4.Crem_Contig15   151790 9 -  1794024 TTCCTCGGA
i caeRem4.Crem_Contig15 C 0 I 11
s caePb3.Scfld02_0       3302865 9 -  4147112 CTTCTCAGA
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18213   401180 5 +   720316 ttgcG----
i caeJap4.Scaffold18213 I 32 C 0
e cb4.chrX              17339344 229 - 21540570 I
e caeSp111.Scaffold582    187097 51 +   484378 I

a score=12434.000000
s ce10.chrX              2591424 106 + 17718866 AAAAATCGAATCGTT--GATTTATGCCAAGCGTG-----TCCGAACAAAAGTACAGAAGAGAACGC--TGAGATAAGAAAACCTGGCT------AGCAATTGAGAG------AGGGATTCACTACGG
s caeRem4.Crem_Contig15   151810 104 -  1794024 GCCTATcgaatcttt----tcttttctcacttcCACGATGTCGAACTAAAGTAC-----AGAACGC--TGAGATAAGAAAAcctgaat-gaaaagaaaacagggGG----------ATTCTCATCG-
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    187148 117 +   484378 CCTTataggtttttttcaattttttccccATTCA-----GCCGAACTAAAGTAC-----AGAACGCTGTGAGATAAGAAAACCTGCCTTGAGAAGGAAATTTGGGGAGAAAGAGGAATTCACATCGG
i caeSp111.Scaffold582  I 51 C 0
s caePb3.Scfld02_0       3302894 100 -  4147112 ACCTTTAG-----TGGTCGTTTCCTAGCAATTTA--------GAACAAAAGTGC-----AGAACGT--TAAGATAAGAAAACCTGACTGGAGAGGGAAATTGGTGG-------GAGATTCACATCAA
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18213   401185  98 +   720316 ---------TCCATTTCATTCTTTAACCAATCCG---ACGCTGAACTAAAGTAC-----AAAACACTATGAGATAAGAAAACCTGACT------AGGGATCGTTGG------GCTGtttcgtttctg
i caeJap4.Scaffold18213 C 0 I 48
e cb4.chrX              17339344 229 - 21540570 I

a score=4171.000000
s ce10.chrX              2591530 54 + 17718866 GAAAACGG-GCATCGTCAGGCGATGAAAATAAATCGCG-TT-----------CTGCTTTACGCGCTA
s caeRem4.Crem_Contig15   151914 41 -  1794024 ---------GCATCG-----------------ACTACGTTTTCCGccgtcattttcttttcaagcCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    187265 49 +   484378 GCAGAGAGAGTATTG-----------------ACTGCG-TTTCCGttgtcgttttcttttcaagcCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3302994 40 -  4147112 G--------GCATCC-----------------ACTGCG-TTTCCGTTGTCA-TTTCTTTTCAAGCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   401283 48 +   720316 I
e cb4.chrX              17339344 229 - 21540570 I

a score=-4147.000000
s ce10.chrX              2591584 6 + 17718866 TCGCCC----
s caeRem4.Crem_Contig15   151955 1 -  1794024 A---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    187314 1 +   484378 A---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3303034 1 -  4147112 A---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   401331 6 +   720316 ----tcgtct
i caeJap4.Scaffold18213 I 48 C 0
e cb4.chrX              17339344 229 - 21540570 I

a score=22245.000000
s ce10.chrX              2591590 25 + 17718866 -------------------------TCGTTGTTGTCAATCAATAAACT-TC
s cb4.chrX              17339573 25 - 21540570 -------------------------TTGTTGTTATCAATCAATAATCG-TC
i cb4.chrX              I 229 I 39
s caeRem4.Crem_Contig15   151956 25 -  1794024 -------------------------TTGTTGTTATCAATCAATAATCT-CT
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    187315 25 +   484378 -------------------------TTGTTGTTATCAATCGATAATCT-TG
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3303035 26 -  4147112 -------------------------TTGTTGTTATCAATCAATAATCTATC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   401337 50 +   720316 tcAAGTCAAAAGAAAACGATGCCAATTGTTGTTATCAATCAATAATCT-CT
i caeJap4.Scaffold18213 C 0 C 0

a score=1965.000000
s ce10.chrX              2591615 37 + 17718866 ----CAGTTG-TACGTATGTGTGTGTGTATGTAGAAAGTTTC
s caeRem4.Crem_Contig15   151985 14 -  1794024 ----GAGTTG-TGGAAACG-----------------------
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    187343 14 +   484378 ----AAGTTG-TGGAAATG-----------------------
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3303064 15 -  4147112 ----GAGTTGTTGGAAACG-----------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   401387 18 +   720316 CATTGAGTTG-TGGAAACG-----------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17339598 39 - 21540570 I

a score=172929.000000
s ce10.chrX              2591652 252 + 17718866 AGTAA--TAGTGCACGAAACGTAGAGATATCG-------------AAAGTGATCGGTGAA-GTCGTATAGTATACGGAATCGAGAGTG---CTTCAGGCACAACGACAAAAT-----CGACAGGTGTGGC--------------------------------------------------------GG-----CCCCCCG----------G--GCTTGGCGG----CC----CTCTTTTGCGCGCGCACACACACACACACAA-----ACGTAATTTGTTTGACCTCTACTGGCGCGCGCCCATG---------G-AACCACTTGTAATCTTTAAACTATCTCGGATTCTCGTACTATTTGCTAGCG----TGTGT
s cb4.chrX              17339637 335 - 21540570 GGTAA--TAGTACACGAAACGTAGAGATATCGGGGAGAATCGGACAGAATCATCAGTGAATTTCATGGAGTATGTAAAATCGAGAGCG---CTTCAGGCGAATCGACAAAATTTAACCGACAGGTGTGTCTCATCGGCGctaaagagagagaaagagaaagagaatgcTGGTGG-----CCAACGGGG-----CCTCCCGATGCCCCTCTGATGCTAGGCGGTGGCCC------CTTTTGCGCA--------CAACTACTCAC-----ACGTAATTTGTTTGACCTCTACTG--GCGCGCCAATGGAGGGAAAAGAAACCACTTGTAATCTTTAAACTATCTCGGATTTTTGTACTATTTGTATGTG-----GTGT
i cb4.chrX              I 39 I 48
s caeRem4.Crem_Contig15   151999 278 -  1794024 GGTAA--TAGTGCACGAAACGTAGAGATATCG-------------AAAATGATCGGTGAA-TTCATGGAGTACGCAAAATCGAGAGTG---CTTCAGTCGGAAAGACAAAAT-----CGACAGGTGTGTC---------------------GAAGCGTTGGATGATGCTGCTGGAGGGACTGAC--GG-----CCCCCCGATACCC----GATGCTAGGCGG----CC------CTTTTGCGCG----------------CAC-----ACGTAATTTGTTTGACCTCTGCTG--GCGCGCCAATG---------GAAACCACTTGTAATCTTTAAACTATCTTGGATTCTCGTACTATTTGTATGTGAAAGTGTGT
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    187357 277 +   484378 GGTAATGTAGTGCAGGAAACgtagagatatca-------------aaactGATCGGTGAA-GTCATGGAGTATGCAGAATCGAGAGTG---CTTCAGTCGCAACGAGAAAAT-----CGACAGGTGTGTC---------------------AGGGCGGTT---GATGATGCTGGC-GGCCTGAC--GGGGGGCCCTCCCGATGCCC----GATGCTAGGCGG----CC------TTTTTGCGCA----------------CAC-----ATGTAATTTGTTTGACCTCTACTG--GCGCGCCAATG---------GAAACCACTTGTAATCTTTAAACTATCTTGGATTTTCGTACTAtttgtatgtg----tgtgt
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3303079 273 -  4147112 GGTAA--TAGTGCACGAAACGTAGAGATATTA-------------ACAATGATCGGTGAA-TTCATGGAGTACGCAAAGTCGAGAGTG---CTTCAGTCGCATCGACAAAAT-----CGACAGGTGTGTC---------------------GGGGCAGTTG-GGATGCTACTGGCGGGCCTGAC--GG-----CCCCCCGATGCCC----GATGCTAGGCGG----CC------CTTTTGCGCA----------------CAC-----ACGTAATTTGTTTGACCTCTACTG--GCGCGCCAATG---------GAAACCACTTGTAATCTTTAAACTGTCTTGGATTTTCGTACTATTTGTATGAG----AGTGT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   401405 262 +   720316 GGTAA--TAGTGCACGAAGCGTAGAGATATCG--------------AAATGATCGGCGCGCTTCATAGAGATGGTTGAATCGAGAGAGAGTTTCTAGTCGCATTGAGAAAAC-----CGACAGGTGTGTT-----------------------GGCCGAAG-CGATGCTGCCGG--------GT--GG-----CCA--------------GATGCTTTTGGA----CCGACAAACTTTTGCGCG----------------CACGAAAAGCGTAATTTGTTTGACCTCT-CTC-------CCAATGT--------GGAACTTTTTGTAATCTTTAGACTATCAAGAATCCTCGTatcttttgtttatt----ttcgc
i caeJap4.Scaffold18213 C 0 C 0

a score=5605.000000
s ce10.chrX              2591904 38 + 17718866 -TTTGTCGGCGT-----ACGG-TTGTTCATTTTCCACTTTTCTCT
s caeRem4.Crem_Contig15   152282 39 -  1794024 -AGTGAGTACGT-----ACggtttgtcaatttttcattttccttc
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    187641 37 +   484378 -tgtgtttaCGT-----ACGGTTTGTTC--CTTTCCATTTCCTTC
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3303359 35 -  4147112 -TA----AACGT-----ACggtttgttcatttttccattttcttc
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213   401667 44 +   720316 tttttcccactttgtcaaccg-ttgctctttttctattttgcgcT
i caeJap4.Scaffold18213 C 0 I 1263
e cb4.chrX              17339972 48 - 21540570 I

a score=-1315.000000
s ce10.chrX              2591942 13 + 17718866 -----ACTCTCGCCAACT
s caeRem4.Crem_Contig15   152321  6 -  1794024 c----acact--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    187678 10 +   484378 CACCACCACT--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3303394  5 -  4147112 -----ccact--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17339972 48 - 21540570 I

a score=25517.000000
s ce10.chrX              2591955 121 + 17718866 -----------------------------TTCGCTT--TTAATCGTGAATTTTCCTTTTCTTTCTCTCTCACTCAACAATCGGTTGAGGAGCTCCG--CTCAATGCACACATGTTGCACTA-TTTT--GCGAGTAGGTCAAC------------GGTGGGAAGGTTCCA
s cb4.chrX              17340020 124 - 21540570 TACggtttgaaaagaaaattttctaaaacgcCTCTT--TT--TCGTGAACCCT------------CTCTCCGT-----------------GCTCC---------GCACACATGTTGCACTG-TTTTGGCGGGTTAGGTCAGCAACTGCAGCGCGG--GTGATGGTTCAA
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig15   152327  96 -  1794024 -----------------------------ttctctt--tt--tcgtaAATTCC------------CTCTCTTT---------GGTGGAAGGCTCCG--CTCAATGCACACATGTTGCACTA-TTTT--TCGGGTAGGTCAAC------------G--GAGCAGGTTCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    187688  97 +   484378 -----------------------------TTCTCTCCTCT--TCGTGAATTTT-----------GCTCTCATC---------GGAGATG-GCTCCGCTCTCAATGCACACATGTTGCACTA-TTTC--GCGGGTAGGTCAGC------------A--CAGGAGGTT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3303399  99 -  4147112 -----------------------------ttctctc--tt--tcgtGAATTCC------------CTCTCATC---------GGAGAAATGCTCCGCGCTCAATGCACACATGTTGCACTATTTTT--GCTGGTAGGTCAGC------------A--GAGAAGGTTCAA
i caePb3.Scfld02_0      C 0 I 2708
e caeJap4.Scaffold18213   401711 1263 +   720316 I

a score=65667.000000
s ce10.chrX              2592076 111 + 17718866 CAATA---CACCT-TGTTCTGTGACATA----------------C------TTTTCCACCGAAAATCAGTCTTCT-----------------CGT---GTGGA-TTTTCAAGATGTTCCTTTGTTTGTGTGAAACGGAACTTGGTTTCTTTTTTCACG
s cb4.chrX              17340144 138 - 21540570 CAATACTCCACCTATGTTTTGTGACGTA----------------TTTATATTCCTCCACCGAAAATCAATCTTTTTACCCGTCCCGAGAGCACAA---ATCGAGTTTTCAAGATGTTCTTTTGTTTGTGTGAAACGGAACTT-TTTACATTTTCCACg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   152423 114 -  1794024 CAATA---CACCT-TGTTCTGTGACGTA----------------CTTA---TTCTTCACCGAAAATCAATCTTTTT----------------CGG---AGCGA-TTTTCAAGATGTTCttttgtttgtgtgaaacggaactt-tttacattttccacg
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    187785 130 +   484378 CAATA---CACCT-TGTTCTGTGACGTActttcttcgccttcttcttc---ttcttcaccgAAAATCAATCTTTTT----------------CGG---AGCGA-TTTTCAAGATGTTCATTTGTTTGTGTGAAACGGAACTT-TTTACCTTTTCCACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3306206 117 -  4147112 CAATA---CACCT-TGTTCTCTGACGCA----------------GTTC---TTCCTCACCGAAAATcattcttttt----------------cggaaaagagt-TTTTCAAGATGTTCCTTTGTTTGTGTGAAACGgaactt-tttactttttccacg
i caePb3.Scfld02_0      I 2708 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I

a score=2843.000000
s ce10.chrX              2592187 16 + 17718866 ---TAGGCTACTCATTTTT
s cb4.chrX              17340282 16 - 21540570 tttcaccttttttttt---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    187915 19 +   484378 TTTCACcctgtttattttt
i caeSp111.Scaffold582  C 0 I 86
s caePb3.Scfld02_0       3306323 19 -  4147112 tttcaccctgtttattttt
i caePb3.Scfld02_0      C 0 I 86
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e caeRem4.Crem_Contig15   152537 11 -  1794024 I

a score=473.000000
s ce10.chrX              2592203 5 + 17718866 GCAAA
s cb4.chrX              17340298 5 - 21540570 gcaaa
i cb4.chrX              C 0 I 92
e caePb3.Scfld02_0       3306342 86 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e caeSp111.Scaffold582    187934 86 +   484378 I
e caeRem4.Crem_Contig15   152537 11 -  1794024 I

a score=0.000000
s ce10.chrX              2592208 605 + 17718866  
e caePb3.Scfld02_0       3306342  86 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340303  92 - 21540570 I
e caeSp111.Scaffold582    187934  86 +   484378 I
e caeRem4.Crem_Contig15   152537  11 -  1794024 I

a score=505.000000
s ce10.chrX              2592813 87 + 17718866 TTATTTTTTTCGACAATAATCCAGTCAAAAAACCGAATCTCTCT------------CTGCCACACGTCTTAAACC------ATGAGTGCCATTCGAAAAACCCGC
s caeRem4.Crem_Contig15   152548 94 -  1794024 ttattttttgc----acgATCCACCAATAAGACCAACTTTTTCTTATCCATTTTACCGCCCATATGTTTCTTACTGACCATATGAATGCCA---Gaaaaaa----
i caeRem4.Crem_Contig15 I 11 C 0
e caePb3.Scfld02_0       3306342 86 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340303 92 - 21540570 I
e caeSp111.Scaffold582    187934 86 +   484378 I

a score=-1077.000000
s ce10.chrX              2592900 6 + 17718866 GCCCAT-
s caeRem4.Crem_Contig15   152642 2 -  1794024 -----aT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3306428 6 -  4147112 GCCTGA-
i caePb3.Scfld02_0      I 86 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340303 92 - 21540570 I
e caeSp111.Scaffold582    187934 86 +   484378 I

a score=746.000000
s ce10.chrX              2592906 11 + 17718866 AAATACGATCA
s caeRem4.Crem_Contig15   152644  4 -  1794024 ---AACG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188020 11 +   484378 aaaaacgatca
i caeSp111.Scaffold582  I 86 C 0
s caePb3.Scfld02_0       3306434 10 -  4147112 AAAAACGAtc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340303 92 - 21540570 I

a score=62231.000000
s ce10.chrX              2592917 193 + 17718866 TTTCTTCGTTTCATATCAAATTT--TCGATAAAACGTCCAACGATTGTACGTGCAGTTGACTACATTCTCA-------CACTACAATCTTTTCCTCAATGC--CCCTTTTTGCCTGTCTTTTGTTGAAACTT----TTTTTTCGGTTATGGAACG-CCTTT-AGACTAGGTT---TTGAATGATTGATGG---------------GACAAGGTAAAAAAAAAA--CGGAA
s cb4.chrX              17340395 180 - 21540570 tcttctcttctcttatCAAATTG--CCGAGGAAATACCC-----CCATACGTGCAGTTGACTACGTTCCTTTAATACACACTACAATTGTCTAT-----------------------------TTGGAAATGGGAAATC----CATCATGGAGCGTTTTCTCTAATTGGCTTTTATTGAGTGATTGATGAATTGG----------TTGGAACTGTAAAAGAAAAACGGAA
i cb4.chrX              I 92 I 1073
s caeRem4.Crem_Contig15   152648 197 -  1794024 TTTCTCCTTTTCTTATCATATTG--CCGATGAAATACCCAATCATTTTACGTGCTGTTGACTACATTCTCT-------CACTACAATTGTTCACAAAAGGCAGTCCG--TTACCTGTCTTTTGTTGGAAATAGAAATTCG-TTGGTCGTGGAATAATTCCT-TGATTAGGTT---TTGAGTGATTGATGGATGAG----------GTTGATTTATATGGGTGA-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188031 216 +   484378 tttcttctttccttatCAAATTTCCCCAATGAAATGCCCAACGATTGTACGTGCAGTCGACTACATTCTCA-------CACTACAGTCATCCACAAAAGGCGGCCCATTTTACCTGtcttttattggaaaatggaaatctgTCGGTCATGGAACG-TTTCT-TGATTAGGTT---TTGAATGATTGATGGATGGCCAAACTACTTTTAGAGGTCTACGGCAAA--CAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3306444 208 -  4147112 ------cttttcttatcaaattg--cCGACGAAATGCCCAACGATTGTACGTGCAGTTGACTACATTCTCA-------CGCTACAGTCATCCACAAAAGAAATCCCATTTTACCTGTCTTTTGTTGGAAATCGAAATTCT-TTGGCCACGGAACGTTTTCT-TGATTAGGTT---TTGAATGATTGATGGATGGGCGTAGtacttttgaattattttgaaaaa--cggaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I

a score=960.000000
s ce10.chrX              2593110 3 + 17718866 ACG
s caeRem4.Crem_Contig15   152845 3 -  1794024 ATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188247 3 +   484378 ACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3306652 3 -  4147112 acg
i caePb3.Scfld02_0      C 0 I 54
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-3899.000000
s ce10.chrX              2593113 49 + 17718866 ACTATTC-------CGACAAAAGTTCACTTTTTTGATTGATTAGTTGAAACTATA-A
s caeRem4.Crem_Contig15   152848 28 -  1794024 --------------GGACAAGagg--------------aaacatttaaaattgtaC-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188250 41 +   484378 ---ATTCAAACTTTACATAATTGTT-----------TCAAGTGTTTCAAATACTA--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3306655 54 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-21442.000000
s ce10.chrX              2593162 180 + 17718866 ----------------------TGAAGAGAAAAAAGTTTGTGCGAAGGTTTTGAGAAGCGACTTGAGAAATGAAAAGTCATTTATAAACAACT--------TTCATCTTGTGATCTTTCGTTTTCTTAGTCCGAAACGTAT-TGTCAACTGACC----------CAATTTTCTAGGCTTCCAGGTTGATTTCATTTTATGATA--AATAAATTTATATTTACA
s caeRem4.Crem_Contig15   152876 156 -  1794024 TTCATGGAGTCtagtttttgtttgaaaaagagaaga-----aacacaattttcttcaacaaa---------------------acaaacgttt-----------tttttttcatgtttg----------------ttgttt-tagaaaacaata-------aaataattgtttatttttcc------tcattttttagTGGTTCGAAACAAAATGTATCTCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188291 169 +   484378 CGAATGAC------------TTTCAAAAGGAACCAG-----TATATAAATTCATCCAGCAAAAttaga----taattttttatataaataATGATACAGTATCATTTATTTGATCTT------------------TTGTAC-TTCAACCCAACCGAAGTACACACACAAAATAACTTTTCC------GTTCGTTTCCTTTATC--GAACAAT-TGAAT-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3306709 175 -  4147112 tgaatg--------------------gaaaaaatag-----gcGAAAAGTTAATTCAGGAAATTTA-------AATCTGCAATATCATCATTTATGGTCCatcaaatttctaattttcag--aaattattctGACTCGTACATTTAATACTACC------TACATGTGTTAGAATATCTCT------GCTTCTTTTTACTACT--AATCAATCCGAATTCATG
i caePb3.Scfld02_0      I 54 I 45
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-3947.000000
s ce10.chrX              2593342 61 + 17718866 CTAGGCAAATtgataataatagtaataataatataaacaataaaaacaTT----TTACTTTAAAA---------------
s caeRem4.Crem_Contig15   153032 57 -  1794024 --AGTCAC---------------------AATATGAACCAGTATTACACTCTACACACTCTCGATGCAATCTATTCGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188460 57 +   484378 AGAGACTCGATGG-------AATGGGACTAACATGATGAAGCATGACAAT-GGCTCACTCTGTAG---------------
i caeSp111.Scaffold582  C 0 I 7
e caePb3.Scfld02_0       3306884 45 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-40857.000000
s ce10.chrX              2593403 256 + 17718866 TTTCAATATTCATAATGCGCTTTCTATCTTTTTGTTATAATGAATT------CTCCAAACACA-------ATAAAGTCCATGCTTGCACTTTCCTTTTTATTTGTTCAAAATTTGTTT--------ATCTGTAACCAAAATTTATTCATTACTTGCAATACTCAGTCGGTGTCATGAGTAATGTATCAAAACTAATACAAAATACAAT----CAATTG-----------------TGTTCTATTTCCGGTTATCTAGACAACTTTCATATGTCTGGAGATGACGTTGTAATTGAGTTT--------------
s caeRem4.Crem_Contig15   153089 227 -  1794024 ------TCATTATGTTCCTACTTTGAATGTTTCATTGTTCTCATTTCCTGGATTTAGTTCAGA-------CATAAATCAGT-----------------CTAGAACGGAACACAAGCTCTGAAATCACAGTATGACtaattttgatctttttcat----ttttcaacc--ttacccaaat--tc-aaaaaaactaag-gAAGAGACAACATGTCATTTGAA---------------TCTTGCG--------CAAATAGAAAA---TGACACGTCTGCAAA------AGCGTTCCCGCTGA-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188524 204 +   484378 TCAAACGCACTCTATTCAGAGTCAACGCGTTC--------------------TTTATATTAAA-------ctgaaatcact-------------ttttctagTGTT-----TCATTTC----------------------CTGGATTTATATGT----CTGTCTACT--AGTCATAAAC-----GTTAGAATTA------GACGAATT-AGTCATAggaatgaactttt------tttttagattc----gaCTCAGACTA---TCTTAT-TCTTTAGGT----TTGGATTATTGGTTACA-----GATTAT
i caeSp111.Scaffold582  I 7 I 3
s caePb3.Scfld02_0       3306929 258 -  4147112 TTTCACCTTTCCTGATGATCTTTTATACTTTT--------------------GTTCAATCAAAGTacactcaaaaatcattctccg----ttcgttttcttttgtgga--accaattc-aaaagaaatgtgTGAGTAAAGCTCGTTCTATA---------GACAACT--TGTGATGCAC--TCTATTGAAACTCAT-CCTGTtgcaat-tttgatttgaaacactttttcaatgatttttcatttcc--tcattcgaaaat---tcaaat-ttcataga------TGGACTCGTGagtaaaaaaatgagtaa
i caePb3.Scfld02_0      I 45 I 51
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-2831.000000
s ce10.chrX              2593659 31 + 17718866 ATATCCCCTGGATTAGGAAATTGAAATGCAA----
s caeRem4.Crem_Contig15   153316  8 -  1794024 -----------------------AAATGTGG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188731 10 +   484378 -------------------------Ctgttccgtt
i caeSp111.Scaffold582  I 3 C 0
e caePb3.Scfld02_0       3307187 51 -  4147112 I
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-9230.000000
s ce10.chrX              2593690 104 + 17718866 CAGTTTTTATAGAAACGGAAGTAAC---ACTTAAAAGCCTGAAAATTAGTTGAAATGTCTTTTTTT----------------------TCAGATTTTGGAAATTGAACTATAGACA----------AAAAAAATTTTAG
s caeRem4.Crem_Contig15   153324 102 -  1794024 CACTTGATGTGGGCACGCCA--------ACACA-------------TATT----ATGCTTTTCCTTTCTCGTTCTCAAGacttcagaatcaaa----aaaactttt--tgttcccTCTACTCTCTGAgaa------tat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    188741  69 +   484378 ---tttttct--tcaaacatGAAGA---ACATA-------------TATTCAGAACACTTTTCCTT----------------------CAGAA----AATACTTGA--TGTGGACA---------------------AT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3307238  90 -  4147112 TAATTTATATGGgcaaacaagaagaaataCTTA-------------TATGCACAAAatctttcttc----------------------tcaaattgTGGTACTTGA--TGTGGGCACAGC------AATA------CAT
i caePb3.Scfld02_0      I 51 C 0
e caeJap4.Scaffold18213   401711 1263 +   720316 I
e cb4.chrX              17340575 1073 - 21540570 I

a score=-31817.000000
s ce10.chrX              2593794 151 + 17718866 AAATTGTTTTTGACA---------------------------------CTTTTTCC--CTAGCTCTGTGAACT-----TTTCT--------AGAATTTTTATTTCTAAATA--------CTAACCTTTTCATAAATTTTTTCCGTTTATTAACATCACCTAATCATTTTCTTTT--TGAACTTAAAAACCAAAACTGTTAAAATTTTCT
s caeRem4.Crem_Contig15   153426 157 -  1794024 aaatttcagttttct-----------------tcga-CTCCCCCTGTCTTCTTCCT--CTTGCTTCggaaattt----tctcttattttggaacatttttcgttttttttt----ctccgagACAGTGTTACTTATTGAATAATGTAATTGTTGTTA------CATTTCACTTC----------ATA-ACATGTTTATCCCT-------
i caeRem4.Crem_Contig15 C 0 I 15
s caeSp111.Scaffold582    188810 170 +   484378 ATATTgcttttctct------------attcttcggacaatttttttcgtctccccagttttcaatatgaactcaaattttcttgttaGGCGACAATCTCGAGATTCAGTAGAGAAGACTCGTCATTTAAATTTATT--CCAATTTCA---------------CATTTCTCTTG----------ATACACATAAATCTTCAATTTGCTT
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3307328 187 -  4147112 atattgcttttttcttttattctcaaGATTATTCGATCAACTTCGTTCTCCATTCC--TTTCCCATAtgaattc----cttcttttt--------ctctcagttCCCAGTA------CCTATACGTTCACATTCGTTCGCTTCTTTCACTAACAAAGAAT--TCGTCACTCTTGCTTCAATTTTGTGCAcatcttctttccttttttct
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213   402974 128 +   720316 AAACCacatttgtct---------------------------------ttttttct--ttcattct------------ttttttattt-------ttcttccatttttatc------CCTCTAAATTTGCATCAC----ATCACATCACAATTATAGcctcgtcgttttttttt--tgcatttg----acACTTCTCT-----------
i caeJap4.Scaffold18213 I 1263 C 0
e cb4.chrX              17340575 1073 - 21540570 I

a score=49743.000000
s ce10.chrX              2593945 163 + 17718866 TTCTCGCTCATCTACATTG---TTTGCTATTTT-------------AAAA----AAACGT--ATTCTTGCAGAATTG-----------GTTCTGCTG-----------GATTCG--CGTTTTCGTACCCCCGCTGATGTATAGGATTATGTG------GCAATTGTGAATGACGAGACTTCTCGAGATAGTGAAAAATGCCGAATAACAGTGAGT
s cb4.chrX              17341648 156 - 21540570 AATcaacattaattttttt---tttcaaaaaat-------------tcatgatAAAGTTC--AATTTTGCAGGTTCCCGAGA------ATTGTGTTA---------------------TTTTGGCCC--------ATGTTGAGGATTAAACT------GCAATTGTGAATGACGAGATTCTCTGTAAGCGCCAGCAATGCCAAATAATAGTGAGT
i cb4.chrX              I 1073 C 0
s caeRem4.Crem_Contig15   153598 178 -  1794024 ATTCTACACAAACTCATTTGCATCTACCAGCAC-------------CCAC----AAAGCC--GTTTTTGCAGATTGACGCGT------TCTCTTTTGCCC--TTTTTCAATtgg--ctttttggtacc--aaCTGATGTATAGGATTAAACT------GCAATTGTGAATGACGAGACTTCCTGGGAGCGCAAAAAATGCCGAATAACAGTGAGT
i caeRem4.Crem_Contig15 I 15 I 704
s caeSp111.Scaffold582    188984 175 +   484378 TTCTAATGCCGATGCATCT---TTTGTGACAat-------------ttga----aacctt--ttttttgcagatttcCGCTT------ACCCTGCttgct--tttttaaattgg--CTTTTTGGCGTC--AACCGATGTATAGGATTAAACT------GCAATTGTGAATGACGAGACTTCTCCAGAACACAAATAATGCCAAATAACAGTGAGT
i caeSp111.Scaffold582  I 4 I 474
s caePb3.Scfld02_0       3307519 185 -  4147112 ttttcttgC-------TCC---TTCGCGCTCATCCCATTTATATTCTTGA----AACCCTCATTTTCTGCAGATTTACGCTT------ACCCtgcacaat--ttttcaaattgg--ctTTTTGGCACCGAAACCGATGTATAGGATTATACT------GGAATTGTGAATGACGAGACTTGTCGAGAACGCAAAAAATGCCGAATAACAGTGAGT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213   403102 191 +   720316 -TTTCTGAC---CTCATTTGCATCTGCGCCTCA-------------GTAC----AATGGG--ATTCTTGCAGATTTGCGCACGACTCGGctctttttatttcttttcttatCGGATCTTTTTGGCATCG-GACAAATGTATAGGATTAAACTCATGCAACAATTGTGAATGAAGACTCGACACAAGATTGCGAGAAATGCCGAATAACAGTGAGT
i caeJap4.Scaffold18213 C 0 I 7957

a score=-25849.000000
s ce10.chrX              2594108 564 + 17718866  
s cb4.chrX              17341804 506 - 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3307704 479 -  4147112  
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    189159 474 +   484378 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=-303.000000
s ce10.chrX              2594672 24 + 17718866 ACATTACAGGGGTCCAAA-------CCAGCA
s cb4.chrX              17342310 31 - 21540570 tcaatagatggaaaaaaagaatattccTGTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3308183 38 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    189159 474 +   484378 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=-2924.000000
s ce10.chrX              2594696 112 + 17718866 -ACAAATCTCGACATTACTAAAAAATTTCAAATTTCAAAACAGTTGATAATTGATGAGCAATTTTACCGGA------------AATTAAAAAAAAACTAAT-AAATAAAACACTTTTGGTATTTTT
s cb4.chrX              17342341 111 - 21540570 GGAAAGGCCAGCGATTACGAAAA------ACGctacgaaaattttggatattcg--------TCCACCGAACTTTTTGCCACCACTTCgaaaagaattttcgaaataattcat-attgaaattttt
i cb4.chrX              C 0 I 122
s caePb3.Scfld02_0       3308221  76 -  4147112 -AAAACTCTagcttttac------------tgtttcaacaattttgaaaa--------------cactgaa-----------------------aattactGAGATATGATATGACAGGCACCTTC
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    189159 474 +   484378 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=90.000000
s ce10.chrX              2594808 86 + 17718866 CATCCTTATACATAGTTGGTTATGTAGGACTATTATCAATATAATTAAACAA-AATTGATTTCCTACAGT---GGTTGAATAACAATATT
s caePb3.Scfld02_0       3308297 84 -  4147112 AATTCCAATTCATCATTAACTAC------TCATCATAAAATAAATGACACGATAGCTAATTTCCGATCTTTCAGAATTATTAGCGTTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17342452 122 - 21540570 I
e caeSp111.Scaffold582    189159 474 +   484378 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=-17408.000000
s ce10.chrX              2594894 312 + 17718866 -GAAACATAAATAGGCCATAAAATTCTAAGCGGAACATTTTTTTT------------------CTTTGATCGACGGCTTCCAAAAAAGTGGCAAAAAATGAGACTTTCCCAATT--TTCAAAAA----ATTGTA-------TTGTA------------TAAAATTTTGAATTTTCTTACTT-----------GGTCATTTCCCCATTGGCCCTAGTCCACCATTAAAATAAATTGCATCACAATCAG--TTCGACAAAACAACTTTCCTATAACTAAGATCAATGCCT-----------AAGATCAC--AACTACTTTTGAG----ACTTTCAATCGGAAATC----ATTAGTTCACCA--CATCATGTTTTATGGAGAGCGCCAGTAAACC
s cb4.chrX              17342574 356 - 21540570 -GAAAAATCAATT--ACCCAGGATCGGAta-ggaacattttttgtgctGACCCAACTGGCTTACTGTGTTCAACAG-TTCCattcaatt--------ttaattattttccaaACGACCCAATGAAACTAAAGTACCGTAGTTTCTGACCGAACCGGAAAGGAAATTTCGGCATCTcaactttttctttccaaaaaaatttctcgagtAGTCTC--CTGACCGTT--------CCTCACCTAAACCAGTTTTCACTACAAGAAGCATTATGTA---GAGATCACAACTTTCTCCATTTCCGtcattactgtattttttcta------gttttaagTCGAAAACTTTTGATCAAAGCAAAAGGCTCTATTTCCAA---GAAATGCTGGAAATC-
i cb4.chrX              I 122 C 0
s caePb3.Scfld02_0       3308381 218 -  4147112 GGAACAATAAACTGAGCTCAGAAGTGTA----AAACATC------------------------CCCTGCTCAA------------------------TTGAGTATTCTAGAAGTaatttgagaa----gaagtg----attttttg------------aagagttatGAACACTCTGATTT-----------AAAACTCTCTAGAG------------------------------AACCAAGTATACGTTCAGTATGAGAA-------------------------------------AGTGTTattgaactatttttgaaaaccgttttA--TCGAAA-------ATCAGACCTCAA--CGTCATTTC------GAAATGATA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    189159 474 +   484378 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=-2102.000000
s ce10.chrX              2595206 32 + 17718866 GAATCGAAA---AAACTGCCTCACGTTAAAACTGA
s cb4.chrX              17342930 21 - 21540570 TAATCGAAatggaataatttt--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    189633 35 +   484378 gaatcaaaacatAAAACGTGTTGCATCAGACACAG
i caeSp111.Scaffold582  I 474 C 0
s caePb3.Scfld02_0       3308599 28 -  4147112 -------CATCTAGAAAGTCTCACATTAGTGCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeRem4.Crem_Contig15   153776 704 -  1794024 I

a score=85444.000000
s ce10.chrX              2595238 530 + 17718866  
s cb4.chrX              17342951 584 - 21540570  
i cb4.chrX              C 0 I 806
s caeRem4.Crem_Contig15   154480 514 -  1794024  
i caeRem4.Crem_Contig15 I 704 C 0
s caeSp111.Scaffold582    189668 501 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3308627 522 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=6477.000000
s ce10.chrX              2595768 15 + 17718866 GGCCCTTGCTCTTTT
s caeRem4.Crem_Contig15   154994 14 -  1794024 -gcttttgctctttt
i caeRem4.Crem_Contig15 C 0 I 205
s caeSp111.Scaffold582    190169 14 +   484378 -gcttttgctctttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3309149 14 -  4147112 -GCTTTTGCTCTGTT
i caePb3.Scfld02_0      C 0 I 281
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I

a score=63.000000
s ce10.chrX              2595783 5 + 17718866 GCGAC
s caeSp111.Scaffold582    190183 5 +   484378 tctac
i caeSp111.Scaffold582  C 0 I 232
e caePb3.Scfld02_0       3309163 281 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I
e caeRem4.Crem_Contig15   155008 205 -  1794024 I

a score=0.000000
s ce10.chrX              2595788 972 + 17718866  
e caePb3.Scfld02_0       3309163 281 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I
e caeSp111.Scaffold582    190188 232 +   484378 I
e caeRem4.Crem_Contig15   155008 205 -  1794024 I

a score=372.000000
s ce10.chrX              2596760 80 + 17718866 TTTCTCAGAATTACTCATATTCACGCTCCCTCCCCCCAAAAAATTTTCTGTCTCGTCATTCAAGTGACTCTTTGACGCTG
s caeRem4.Crem_Contig15   155213 66 -  1794024 TTTCTCAGAATCAGACATATTCATTCTGAAACTACGCTAT---TTCTCTGATACATCAT------AACTCT-----AGTT
i caeRem4.Crem_Contig15 I 205 C 0
e caePb3.Scfld02_0       3309163 281 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I
e caeSp111.Scaffold582    190188 232 +   484378 I

a score=300.000000
s ce10.chrX              2596840 1 + 17718866 C
s caeRem4.Crem_Contig15   155279 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    190420 1 +   484378 C
i caeSp111.Scaffold582  I 232 C 0
e caePb3.Scfld02_0       3309163 281 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I

a score=16029.000000
s ce10.chrX              2596841 54 + 17718866 TAAAGCTGAATAA-----AAATTAAGAAAGTCACGTCCT---------------------------TGTATTGAATCCCTTGTTTC
s caeRem4.Crem_Contig15   155280 76 -  1794024 -TAAagataaaaa-----ttctgaagaaagtCACGTCTCCA----AGTTGATTCAGAAAAGTCACCTGTGTGGAATCCCCTGTTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    190421 85 +   484378 TAAAACGGAAGgaaaattttctcgagaaagTCACGTCTTAT-AAAAgttgattcagaaaaatcatctGCGTGGAATCCCCTGTTTC
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3309444 81 -  4147112 TGAAGTGTAATAA-----TTCTGAAGGAAGTCACGTCTTCTGAAGagttgattcagaaaaatcagctgCGTGGAATCCCTTGTTTC
i caePb3.Scfld02_0      I 281 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I

a score=-1139.000000
s ce10.chrX              2596895 19 + 17718866 TTTTTTTACTTAGTCATAT-------
s caeRem4.Crem_Contig15   155356 16 -  1794024 ---AATGGTTGCGTCATAT-------
i caeRem4.Crem_Contig15 C 0 I 6
s caePb3.Scfld02_0       3309525 22 -  4147112 ----AGGTCTGCGTCATGCCCCCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I
e caeSp111.Scaffold582    190506 26 +   484378 I

a score=3005.000000
s ce10.chrX              2596914 290 + 17718866 GCTAAAATTCATCATCTCAAATCCAGATTAATCTCGTTCGCATGTGTCTGGTACTTTTTTCAACACCTCCAAACACTTGTGAT-ATGTAATGACT-----CTTTGC----GAGT------------TTG---TTTCGAT--------------TTAAATT--------------------------------------------CAAACGTAAACTA-----------TAAA----TATATATATATT-------------------CAAAGTCAGAAACGC--GTTCTTTTT---------TCAGTAGCTTT-TTTCAG--------TAGCTTTTTTTCAAGTGTAAATTAATTCTGAAAATAGGAGAAAAATAAAATAAAATTTTCGT----TTTCCGTCTAGAACGTCTAGAACCAAGATCACATTT-T
s caeRem4.Crem_Contig15   155378 328 -  1794024 TCTAGAATTCATCATCTCGATACCAGACTAATCCCGTT--CATGCGTCTGGTCACTTTT--AACACCCCC-AATCCGTATAAA-ATGAGCTGTGC-----ACTTGCTCTTAAGT------------TTAACATTTTGTTACGAATCCTATATTTAAAATTATGCGAGGGAGTCAGAAGCAGCT---------------------GAAACTGAATCTGatactaattttgaaaatatcatat-----ttG----------------AACAGCGTCAGAAGtgtttcgtcttttttct------tctgtcaatt--tttcagtcactCTGTATTTCAGCTCTGAAAATGGATATATTCTAGAAACATAA-----------------TTTGAA----TTAGTTTTT-GTACTCACATAACCTAGAT---------
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    190532 332 +   484378 GCTTGAATTCATCATATCAAATCCAGACTAATCCCGTT--CATGCGTCTGGTATATTTT--GACACCCCC--ATTCTTATAAAAATGTGATATTC-----CCTTCTACCAAAGTCCTGATATTCAACTG--ATTTTGGT--GAAGTTTagata---aatt-----------tcaaaaact--------cggTCA----------GAAACAGCAGCTG------AATCTGAAA----CCTGTTTATCTTGACGAATGTCAATCTTGAAGAACgtcagaattttttatttttgtcacTC-----Cgtgtcattttcttccagt-------tATTCCTTCTTTAAATGTGAATTCGTTTGGAACATATAA-----------------CTGTGT----TCATTCTCT---------AGGACTTAGATCAGTGTTA-
i caeSp111.Scaffold582  I 26 I 120
s caePb3.Scfld02_0       3309547 318 -  4147112 GCTCGAATTCATCATCTTAAATCCAGACTAATCCCGTT--CATGCGTCTGGTATTTTTT--GACACCCCC--TTTCTTATAAA------ATATTCGTTTGTCTCTTACCAAAGT------------TTG--ATTTTAGT-----GTCGAAATATCTGATT-----------TCGTATTCTACTCTTACCCTTCATTAAAATCTTGAGATCAAGTCAG------CAGCTGAAA----CTCAT-----TTGCTAAATGTCAATACGAACCAGCGTCAGAA------GTTCTTGTCACTCATAATTCTGTCACTCTATTCC-----------------------AATGtgaatttattctgaaaatataa-----------------tttttcgcCACCACCGTCT---------AGAACTTAGATCACGTCT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I

a score=-2032.000000
s ce10.chrX              2597204  97 + 17718866 CAGTAAAACAAGATT-----CCGAGGAAGTTTTTCTTTGAAATG---------TGTATGTGTTTTTCAACAATTTT---TACATTCAAACGGCaa-ataaatttttattt--------------taaat-----------
s caeRem4.Crem_Contig15   155706 111 -  1794024 ---------------TTAGACAgagaaagttttcattctggaGGTCAAATGATTGAATATACTTC--------------CAGATTCAGATTTCTTCAGATGTTTTCCCTCCCTCATGACTCATTTAAGCTTATCGTATGT
i caeRem4.Crem_Contig15 C 0 I 3
s caePb3.Scfld02_0       3309865 125 -  4147112 -AGataaacaagttttttgacggaggaagtttttttgctgaaaattaggTAATTGAGTATGCAACTCAACACTCTAACATAGAtttggatttctt------tttttcttc---cgtgACTCATTTCAGTTTAGCT-----
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I
e caeSp111.Scaffold582    190864 120 +   484378 I

a score=8293.000000
s ce10.chrX              2597301 44 + 17718866 ttaaaCTATGCCTAG--AT-TGAATAATT---TGAGAAATTTCTCCATTT-----
s caeRem4.Crem_Contig15   155820 44 -  1794024 TTGAACCATAAGAAG--ATATAACTGACTTTGTGAGAAAAT----CGCTT-----
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    190984 49 +   484378 TTGAACCATATGAAG--ATATAACTGACTTGTTGAGAAAAT----CGCTTCCCTT
i caeSp111.Scaffold582  I 120 C 0
s caePb3.Scfld02_0       3309998 50 -  4147112 TTGAACCATAAGAAGATATATAACTGACTTGGTGAGAAAAT----CGCTT-cctt
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e cb4.chrX              17343535 806 - 21540570 I

a score=71650.000000
s ce10.chrX              2597345 252 + 17718866 --------------------TCCCTCTTCTCTAAATAT----------TTTTTTTCTTT-TTTTTTCTGAATATGACGGCTTCAC-------TTGGGGTGGCTGGAAGGAAGTTCCTGGAATATTTCTCTCTTTCTCATTTCCCATCACTTCCAC------------ATACAAGTATAGTCTA-TTTTTCCCCACGGAGTCAAGTTTTTTTC---------TTCG--TTGTTGG-------TTTTTCTTTCTTCCT---GCTTTTCTTTCTGTAGGTTCAGTT--TGACCAAAGGTTTTTTGTTTGCAGAATTTTAGATCAAACAA
s cb4.chrX              17344341 284 - 21540570 ttcctttttttcaaagattttttttcctttttccgcTTTCTCGCTTCCTTCCACTCCTC-GGCTTTCTGAATATGACGGCTTCAT-------TTG---------GTAAGAAGTTCCTTGAA--------------TTGGCTCCCATCATCTGCACCACGCGACGAGGAAGA--GTATCGTCTA-TTTTTCCCCACGGAGtcaagttttttcttctcttttgcctaacttttcggttattctttcttcttt-ttctt---cttgctctttgtgttgatgaaaat--tgaccaaaGtttttttGTGAGCACAGTTCTTGGCCAAAC--
i cb4.chrX              I 806 C 0
s caeRem4.Crem_Contig15   155864 230 -  1794024 ------CCTCTCATATATT--------TCTTTCCGCAT----------TGCTACTCTAT-GCCCCTCTGAATATGACGGCTTCATTTGGACGTTG---------GTATGAACTTCCTTGAA--------------TTGGCTCCCATCACTTCCAC------------ATGC--GTATCGTCTAttttttccccacggagtcaagtttttttt---------cttgacttttcgg----------ttcatt-ttctt---tttgttctttgcg-------aaat--tgaccaaagtttttttgtgagCAGAGTTCTTTGTCAAAC--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    191033 241 +   484378 --------------------TCCTAGTTCTCTCCGCAt-------ttcttcacttcttcttcttttctgaatatgACGGCTTCAT-------TTG-----ACTTGTTGGAAGTTCCTAgaatatt--tcttctctttttctcccatCACTTCCAC------------ATGT--GTATCCTCTA-TTTTTCCCCACGGAgtcaag--tttttt---------cttgacttttcgg-------gtcttcttt-tttctctacttgctctttG-G-------AAATTGTGACCAAAG--TTTGTATGAGCAGAGTTCTTTGTTAAATAA
i caeSp111.Scaffold582  C 0 I 151
s caePb3.Scfld02_0       3310048 223 -  4147112 --------------------ttttattgctttccgcat-------ttttcttctttctc-gcCTCTCTGAATATGACGGCTTCAT-------TTG---------GTAGGAAGTTCCTAGAATA-----------TTTGCCTCCCATCACTTACAC------------TAGT--GTATCGCCTATTTTTTCCCCACGgagtcaagtttttttt---------cttgacttttcgg-------gtcttcttt---------cttgttctttgcg-------aatttttgaccaaag--tttGTATGAGCAGAGTTCTTGGTCaaacaa
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=-11991.000000
s ce10.chrX              2597597 71 + 17718866 ----TG------------ATGAGAAAATTTGTGGGAAACAGTTTTTTCATTCTATT-------------TTTTTTACAAAAAAAAACTTTGT------TCAAAAGT----
s cb4.chrX              17344625 68 - 21540570 AAGTTTTTTGCGTGagtattgagaaaa---------aatgggtttC----TATCTG-----------TATAGTTTTCTAA------------------TCAAACTCTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156094 37 -  1794024 AAGTTT------------GTGagaaa------------------------------------------atactgtttcaa------------------ccaataactct-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3310272 84 -  4147112 ----tt------------tcgaaaaaat-----aagaacGACTTTCG-ATTGTATGGTTTCGCaggtcatatttttcaaaaacttatttcgaacgttttcaaaatt----
i caePb3.Scfld02_0      I 1 I 69
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191274 151 +   484378 I

a score=-1406.000000
s ce10.chrX              2597668 55 + 17718866 TTAATTCTCTATTCTCAAAAATATAATGCAGACATAGCGCCATGGAAAC---TTTGTG
s cb4.chrX              17344693 43 - 21540570 CAACtgttcgattttcaaaagttt--------------gcaatcgaaac-tttctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156131 29 -  1794024 ------ttcttctttgaaaaa-----------------------gaaacggttCACTG
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3310356 69 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191274 151 +   484378 I

a score=-5766.000000
s ce10.chrX              2597723 17 + 17718866 AGCTTGCGCAG--AGCATT-------
s cb4.chrX              17344736 14 - 21540570 tctttct------ccgcttt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156160 20 -  1794024 TACTtatgaaaacatcattt------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3310425 17 -  4147112 ---------AGCTCAAATTTAGCAAG
i caePb3.Scfld02_0      I 69 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191274 151 +   484378 I

a score=-23534.000000
s ce10.chrX              2597740  79 + 17718866 ------TTTCACTTTTTT--------------------------TTGGCTCTTTAGTTT-CAAACTTTGTGCTTTCCTCTCTGTACGAACTTTCTGATTTCTGCATTTTTTT-------------------------
s cb4.chrX              17344750  54 - 21540570 ------tttgagtacact--------------------------agaatccttttgttc--------------ttcgta-----------tttttttcag-ttcattttttt-------------------------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   156180  71 -  1794024 ------ttaaaGTGCGAC--------------------------GCGATTCTTTAGtctataaaaattgagaattcatA---------ACTTCTTGTCGTCTTCGTTTCTTT-------------------------
i caeRem4.Crem_Contig15 C 0 I 75
s caeSp111.Scaffold582    191425  70 +   484378 ------TTTAACCTCTctattactgtagtctt------------aAAGTTGTCCTATTCACGA-----------TCCCA---------ACTGTTT------CTACTTCCTTTA-----------------------C
i caeSp111.Scaffold582  I 151 C 0
s caePb3.Scfld02_0       3310442 128 -  4147112 TTCCAGTTTAAGTTGGTGTTTTGTGCAAAATTAACTGCCTAGAAAAACGAAtcctttttgcaaaaatgagaaCTTCCTAT---TGCTCAGTGTAC------CTAGTTTTCTTGAATACCGGATATGTTTTCCAGCCt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=-6215.000000
s ce10.chrX              2597819 46 + 17718866 ---------TTTGGCAAATTAATTATTTTTTCTTCT--GAAAATTCATAATTTCTTA--------------
s cb4.chrX              17344810 50 - 21540570 tttgaaaaatatagct-taggttcagtttttttttt--ctgtaagtGtttttt------------------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold582    191495 54 +   484378 ---------CATCGCAGTACTTTCATCCTCCAGTCT--ATGAAATTGTAAATTCATAAGTCC------TTG
i caeSp111.Scaffold582  C 0 I 249
s caePb3.Scfld02_0       3310570 62 -  4147112 ---------catttctagtttttcattatttcgtCTTCATAAACTTTCGAATTCATATTTCCCATCTATCG
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeRem4.Crem_Contig15   156251 75 -  1794024 I

a score=-1418.000000
s ce10.chrX              2597865 33 + 17718866 -------TAATAACAGAGAAAGGTAATGAGAAA------------------------TTCAAGG
s cb4.chrX              17344860 53 - 21540570 -------tAATAGT----GAAAAGGTTGGGAACGTTACTTTCTCCATTgattatattttcaaag
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3310639 36 -  4147112 CATCAACTAGACAC----TAAAACCATGGAAAC------------------------TTTGAGG
i caePb3.Scfld02_0      I 7 I 78
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191549 249 +   484378 I
e caeRem4.Crem_Contig15   156251 75 -  1794024 I

a score=-783.000000
s ce10.chrX              2597898 49 + 17718866 TC------------------TATTGTTGAA----AAACACGAAACGGCACACATTAGCACTAGAATATTGA
s cb4.chrX              17344913 63 - 21540570 ttaagcCGGCCCGTTTAAAGTGTCGTTGAACCTaaaaaaaGAAGTA--------TGGAGCTTGTACTCTGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3310675 78 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191549 249 +   484378 I
e caeRem4.Crem_Contig15   156251 75 -  1794024 I

a score=-891.000000
s ce10.chrX              2597947 25 + 17718866 ATGTAACTTTTGAATGGTTTGAA--------CG
s cb4.chrX              17344976 24 - 21540570 -------CTTAGAGT--TTTGAAAGGTTAAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156326 31 -  1794024 ATTTCGCTTTTGTGC--TTTCAAGTCCTTTTCG
i caeRem4.Crem_Contig15 I 75 C 0
e caePb3.Scfld02_0       3310675 78 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191549 249 +   484378 I

a score=-15619.000000
s ce10.chrX              2597972 172 + 17718866 ----TTTTGAGAAAATTTGTAGCATAAAACCCTACAATTTTTAGGatatataaaaatataaaatttGTAGAGAAAAAATATATGAGT--AACA-------AAAAATGAGTAATTGTCACTTTTCAAAAAATTAT--ATTC------------TGTGGG--GATTCGTTCTAAATATGATCAAATATTATAA------CAAAATATTC-----------------
s cb4.chrX              17345000 147 - 21540570 TT-----GGAAGATTTAATTCGA-----------------ttcagagatataa-------------------aaaaaaaaactgcaa--aact-----------gTATAAaactcttatttttcagatattcgggcattt----tccagctatttgga--cattttttggaattatttcCTAATATTGTAAAATGTCTAATAGAGTT-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156357 146 -  1794024 tttcttcagaaaatataTCTAGC-----------------TTCCGGTATaggatttttcttttttttcgatgtgagaaaaattgagatgaaCT-----------ATTTTGGGACCTTATTCTGCAAGAATGTAG----------TTGAGCCGTTCGGA--AG---------------TACAAACATTGTGG------CGGTAGGATC-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3310753 189 -  4147112 ----ttttgagaatattctgAGC-----------------TTCCggaattgagattttcata----------tgaaaaagTATGGGA--AGTTTCAAATGCGAAGTATATAACTTGAACTTTTGAGAAGTTCGA--ATCTAGAGTGTAGCTAAATGAATCAATATGTTCCATTCAGTAACAGCTGTTGCGGAAAGGTCAAGAGAATGTGTATCTAGTCCAATTT
i caePb3.Scfld02_0      I 78 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeSp111.Scaffold582    191549 249 +   484378 I

a score=-43745.000000
s ce10.chrX              2598144 147 + 17718866 AAAAATT----------GATTAGAACTTTCCAATTTTTCAGTCACTATCCAG----GAAGTATTCTTTTGTCTTCAAAA-----------------AATATTT--------------------------CCA----------ATTTAAAATTAATTT----------------TTGCCTAATTTTGAGTCTAAATTTGAAA---AGTCTGAAAAATTTAAATCCTAGTTTTTG
s cb4.chrX              17345147 133 - 21540570 -----GC----------ACCTagaac---------tttaagccaatttcaca----gaaaaa----------ttacaaa-----------------aataaaaataaaaattattttcaatgcGTTCTGCCGGTTGACCACTGTTTTATATCATTTg-----------aagaaataaacaa----------aaaattgggacaCAGTTG------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156503 101 -  1794024 -----AT----------AATCCGCG----------TGGGAGTCAATATCAAa----gaatat----------ttccaga-----------------aaaacaa--------------------------tCGTACGGATATAGTTATA-ATCATTTT-----------------TGTCTGATTTC-----TAAAATtaaga---attca------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    191798 119 +   484378 -aagaatcagttACAGAAATATGTAA---------ATTAAGACAATAATGCCTTGtgaaa------------ttattaa----------aaagttaaaaagAA--------------------------CC----------------A---CATTTT----------------CTGGATATGCT---------AACTAGca---tattcaaat---------tcagatCTCTC
i caeSp111.Scaffold582  I 249 C 0
s caePb3.Scfld02_0       3310942 157 -  4147112 GAAGATT----------GATTCgcta---------ttttcaacaattgcatattttgaaaac-------gtctTATTAATCCATAGCTTTGATTTGAAGAGTA--------------------------CCG----------GCTGTA---CATTTGGAAActtaaaattgaaatggatacgcct------aaaattagga---attttgaagaagcgAA--CCATGTTATTG
i caePb3.Scfld02_0      C 0 I 189
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=-23225.000000
s ce10.chrX              2598291 172 + 17718866 ATTCATTCA---CTTT-----------------TTCAGTTTATG---TATTTTGTTTT---AAATTAAATCTTTACTTTTTAGTAA---GCCAGTTTTTTTATACATTTCCAATTTTCCAAAAAATGTGCACGTTTTGAAGAATTTCGAGCA--TTGCCA-AACG----CTAGCTGTATGTCAGAAAAAATTAATCAAAGTTTAACCC-----------
s cb4.chrX              17345280 185 - 21540570 ACTATGTCAGAGATTTTAGAAtaaactggaaatttcgaaaaatggaatacTCTATTTTCTGAATCATCTTATGTTGCTATTATTAT---ACAAAATTATTTATAAGTATCAAAATAGCCCAA----ATACCTCAATTAGAGTAAACCCAACA--ATTCTG-ACTC----ATCTTTCTCTGTCAAA---------TCAATTTGTAACAT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156604 182 -  1794024 attttgtca---attttaa--------------tTCAGCCAGTGTTATAACCTGTATT---AAATTTCCGAAGTACCTACAACTGTCTGCCAAAGTTTAATTCAGACATTCAAGTAGTCTGA---TATCCGAGAATTAACAAACAACTGGGAATATTTTG-AGCCtgttatcacttttttttaca---------aCATTAAGTAACATTCATTCT----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    191917 148 +   484378 --------------------------------AGTCTGCAGGTG--ACTTTTCGTATTTAGAA----CAGATatatttctcattga---aaGAAATTCAGGATTAACAGGAAT-------------GTTCCTGATTTGAAGAGGTTACCGTA--ACTCTATAGTC----GTTgagttctttgaaa-----------aataaatcatcTAGGTTGTAGAT
i caeSp111.Scaffold582  C 0 I 5
e caePb3.Scfld02_0       3311099 189 -  4147112 I
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=12447.000000
s ce10.chrX              2598463 302 + 17718866 --------------------TTTCCAGTGTTTCACAAAAGTTTCACTCTTACTGTCAGTGTCAGTAATTCGTCATTCCGA--AATGTTCC------------------------------A----CACAATTTCAACGACCTCCACTTCTTT--------------TGTCAATCTTTGAACACCTACAGTTCT-------TCAATATGTCGCTGCTATCA--GT---GTCCCCACCCATAAATTGGACATTCCATC---------TTTCTTCGTTCCGTTCGCGCGCGCGGCAGATAGTTTTCTA---------ACCGAAACAGAACAACaaaaaatgaaaagaaaagaaaagaaaagaaCGACACAACACTCAAACATTCGAAAGTAGTTCGATTCCACAC
s cb4.chrX              17345465 266 - 21540570 -------------------GTTCGGCA----TCACAAA--TCTCAATTTGAT----------ATAAGTTAGTCTCCCTTTCCACCCCTAG------------------------------GATTCATTCAT----ATGACctccaatatattttttttggttgccGTCTCAATCTTTGAACGCCTACAGTCCTgtcttctccaattttcctTTATCACCACCGTcccccccccACCCATGAA----GTCTTTCGTTCC--TTCCGTTTTATT-TTCCA-CT---------gcagataattttttgtttctctcgACCA--------CACCTTCTAACGA----------------------------------------TGAATAGTAGTCCTTGGCCAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   156786 273 -  1794024 GTTAGTGATCTGTCTATTCTTTTCACA----tcacaaa--tctttttttgat---------aatcagtttttttctccattcgTCTCTCG------------------------------G----ATTCAT----ATGACctccaatatttt--------------tctcaatctttGAACACCTACAGTTCTCTTTTCGTCTTCATTTCGTTATCAATA-------TCCCCCACCCATAAA-TGGGTACTTCATTCCGATTCTCTTTCGTTGTTCCGTTT---------GCAGATAGTTTTC-----------ACCG--------CCCCGAATACCGA------------------------TACAgcattccatg--tgaaaaatcGTCTTTTTCCACGC
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    192070 233 +   484378 --------------------TTTCCAG----TTACA--------------------------TTCACTTTATCATTCTGT--GTCATTTG------------------------------A----AACAAT----ACGATCCccaatatttt--------------tctc-atctttgaACGCCTACagttct-tcttccccttttcttcttcgttatCA--TTACCCCACACACCCATTCATTGGATACTTCATTCCGATTCT-TTCTGTCGTTCCGTTT------GCAGCAGATAGTTTTC-----------ACCG--------CCCCAAAAacgaa------------------------------acaagaaa--tgagaagtAGTCGTTTTCCA---
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3311288 261 -  4147112 --------------------TTTAgtg----tcaca--------------------------aaaaatttgtgatCCTGT--ATTTTCTGCAGACCGGTGATATTCCTTTCGTTTTCGTCA----GATATT---AACGACctccaatttttc--------------tgtcaATCTTTGAACACCTACAGTCCT-TCTACATTTCTTTATCAGTCTTTTC---TTCTTATACACACCCATTTATTAGATACTTCATTCCGATTCT-TTTTGTCGTTCCGTTC---------GCAGATAGTTTTG-----------ACCG--------CCCCAAAAACAAG------------------------------ACTCGATA--TGAGAAGTAGTCCACTTTCA---
i caePb3.Scfld02_0      I 189 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I

a score=-4142.000000
s ce10.chrX              2598765 35 + 17718866 CGCGA--TGTTAGTCGTTGCCCCCCGTTTTCTCGAGA--------
s cb4.chrX              17345731 20 - 21540570 -GCAA--TG-----------------CGCTCTCAAGCAGC-----
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold582    192303 37 +   484378 CGCGATGTGTCAGCCCTT--------ACCTCTCTGACACTCTGGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3311549 30 -  4147112 CGCAA--TGTCAGC------------ACCTGTCTGACACTCT-CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   403293 7957 +   720316 I
e caeRem4.Crem_Contig15   157059 10 -  1794024 I

a score=293557.000000
s ce10.chrX              2598800 715 + 17718866  
s cb4.chrX              17345753 696 - 21540570  
i cb4.chrX              I 2 I 6
s caeRem4.Crem_Contig15   157069 627 -  1794024  
i caeRem4.Crem_Contig15 I 10 I 6
s caeSp111.Scaffold582    192340 633 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3311579 617 -  4147112  
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18213   411250 571 +   720316  
i caeJap4.Scaffold18213 I 7957 C 0

a score=91.000000
s ce10.chrX              2599515 1 + 17718866 T
s caeJap4.Scaffold18213   411821 1 +   720316 t
i caeJap4.Scaffold18213 C 0 I 384
e caePb3.Scfld02_0       3312196 24 -  4147112 I
e cb4.chrX              17346449 6 - 21540570 I
e caeSp111.Scaffold582    192973 0 +   484378 C
e caeRem4.Crem_Contig15   157696 6 -  1794024 I

a score=-5132.000000
s ce10.chrX              2599516 24 + 17718866 CATTTCTTTTCT-----------------GTAAAAACAAGT--
s cb4.chrX              17346455 18 - 21540570 ---------TA----------------GACTGAAAACACATAT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig15   157702 34 -  1794024 ---------TCTGGATGAGAAAGCCGTAACTGAAAACAGATGC
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    192973 12 +   484378 -----------------------------ATGACGAcgaga--
i caeSp111.Scaffold582  C 0 I 8
e caePb3.Scfld02_0       3312196 24 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I

a score=-17059.000000
s ce10.chrX              2599540  66 + 17718866 ----CAATCCAGAC-AATCAGA--------------AAAACACA-------------------------------ATAAATGGCTAAC---------TAATGATAAG--ACCCAAATGTCCAACTTG
s cb4.chrX              17346473 105 - 21540570 ----AGACACGAGCTGCATATA--------------GGAACACTTTGGGTAAGAGGCCCTCAGAGTAAGCAAGtaaagaattctgaatttttttttggggcaTCAAA--ATAGAAAGGT--CATTCG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   157736  62 -  1794024 ----ACACTTGGAC----------------------GGAACACC----------------------------------AATTGTAGATTTATGTTC---GTACCAAA--ATAGTAAGGGTACACTCC
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    192993  68 +   484378 aaaaacacatAGAC-ACAAATA--GGGACTAAAATAAGAGAACC----------------------------------AGTAGACGAT---------GAATATTAAAACACAGG-------------
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3312220  68 -  4147112 aaaaacacatagtc-acaaaaaaggggtctaaaaaTGGAACACG----------------------------------AGTAGACGAT---------GAAtaataaa--acaga-------------
i caePb3.Scfld02_0      I 24 C 0
e caeJap4.Scaffold18213   411822 384 +   720316 I

a score=-1612.000000
s ce10.chrX              2599606 22 + 17718866 TT----------------AATAATGTAGAGTTCTTCTT
s cb4.chrX              17346580 28 - 21540570 TTAATGATCGTTGAATCGAAAACTAGAA----------
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold582    193061 17 +   484378 ------------------AAAAACACAAAGTTCAC---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3312288 20 -  4147112 ------------------aataacagaaagttcacttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   411822 384 +   720316 I
e caeRem4.Crem_Contig15   157798 31 -  1794024 I

a score=21521.000000
s ce10.chrX              2599628 153 + 17718866 -----------------------------------------CTTTTTTTTGA-AACCAAGAAAAA---ACTCCCTTCTTGAAAAT-----TATTAATAT---GGACAGAGACG---GTCAGCCATAATATTATTCATCAACAACTAGAAAACGAGAATGAAGAAAAAAATTGTGAGGCATTTCTGTTCC-TTTTTT---GTATTAACAAGATT
s cb4.chrX              17346608 128 - 21540570 -----------------------------------------CTTCTATCCGG-AACCAGGAAGAACACCTGCTAttctt----gt-----gaaaaaaatatagGAGACACAAG-----CAA--ATAATATTATTCAT---------------------TAAGAAG-----CATGACGCATATCTGTTTG-GTTTCGAGCATACAAACAAGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   157829 157 -  1794024 -----------------------------------------gttCTTTCTAG-AACCGGGAAGAACACCTTCTATTCCTAGAAGT-----CGTTTATTTATATGAGACACAAGACGGCCAAGCATAATATTATTCATCAACacgaggagagagaaaaataagaaa------gtgaCGCATATCTGTTCG-TTTTTGA--ATACAAACAAGATT
i caeRem4.Crem_Contig15 I 31 I 297
s caeSp111.Scaffold582    193078 185 +   484378 -----TTG---TCGTCGAACTGAACTCTTTCAGTTGAAGAACTTCCGAACCT-AATGCGGAAGAACACCTTTCATTCCTAGAATTCTGTGTGTTCGGAA--AAGAAACACAGA---TCAAAACATAATATTATGCgccaacaagaaaaaata------gaggaat------GTGACGCATATctgttccttttttga--atacaaacAAGATT
i caeSp111.Scaffold582  C 0 I 81
s caePb3.Scfld02_0       3312308 180 -  4147112 tcgagttgaactttttga----gaccAATTGAATAATACAGCTTCCTTCTCTAAATCCGAAAGAACACCTTCTATTCTTGGAAGT-----TATTCGTAAATATGAAAGACACA---GCCAAGCATAATATTattcatcaacaaaaaaga------------gaac------gtGACGCATATCTGTTCC-GTTTTGA--ATACAAACAAGCTT
i caePb3.Scfld02_0      C 0 I 377
e caeJap4.Scaffold18213   411822 384 +   720316 I

a score=0.000000
s ce10.chrX              2599781 3 + 17718866 TTT
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e cb4.chrX              17346736 0 - 21540570 C
e caeSp111.Scaffold582    193263 81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=-258.000000
s ce10.chrX              2599784 93 + 17718866 CTAGTTAATGGCTAGTTGTTACGGCGGATATGGAAAAATAATGGGGGGGGGGGGGAATGAGAGCAAATGAGAACAGAACAAAAAAATCTTGAA
s cb4.chrX              17346736 44 - 21540570 -----------ATGGttctcac-----------aaaaaaaa--------------------aacaaatgag-------cgaaaatagcctgaa
i cb4.chrX              C 0 I 63
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e caeSp111.Scaffold582    193263 81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=0.000000
s ce10.chrX              2599877 76 + 17718866 TTCTAGCTATCGAAAAAAGAGCAACTGTAATAGGCCAAAAGAGCTACTGTAATAGGCCAAAAAATGGTACGCGGTG
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e cb4.chrX              17346780 63 - 21540570 I
e caeSp111.Scaffold582    193263 81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=227.000000
s ce10.chrX              2599953 429 + 17718866 CGCAAATTTTTTAGACAAACGTACAAAAATGCATGCCTTTTTTTTCTAATTTAATGTTAATTCAAAAATGTGTAAATATTCCatttgaaaataataattaattttgt----------ttgaaattgagaaaaaacacctcaaataatgattgaaagttgccttccgttgctaaaagtaccgtttaatgtttttcggcaaatggcaactttcgggcactatttgaaaagtttttgcaattttgtcaacaaaaatgaatatt--attttcagatggaataaatcttt---------ttctacatttctatatcaat------------------ttcagatcaaaaaagt---tggattacca-taatgaaataagcagtttagtgtagaTTAATT-------------TTTTACTTATTTTTTAGCT----AAAAACAATAGATCACGTTCAAATATGAAAATTTAAGTTGATTTTAAAATGAGAGTATT
s cb4.chrX              17346843 435 - 21540570 ctcaatttctgta---aaagataccaaaat--------ctgtcaacttaTGAAATGTTCGT------ATg-gctaacattttatcagt------tgaccggttttttatatcttttatcgaaactgaaataattaagctcaaa-gttgagtgaAAGGTGG-----ACTGTTACAAGGG---------GGTTTACGGtaaatg-tgattttcagtca-----taaaatagttttgagatttt-tcaaaattaa-gaatgtttaaatttcaaa---aatacatctTTAGCATGATAGTCTTGATAATTAGATTGATCGTAACTAAATTTTAAAGTCAAGATTCGAAAACCCTATGTATTacaaatattgaaatttttgattt-gaataaaataattagacttctgacttttttaattcatttttaactgttcaaaattatcaaaacaaATTCGATTTCAAGAAGTT---CTGATTTTCCATTGAATATCTT
i cb4.chrX              I 63 I 97
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e caeSp111.Scaffold582    193263  81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=0.000000
s ce10.chrX              2600382 116 + 17718866 ATAATGTACAAGTACGCATAAAACTACAACGGCCAATTTTTTGAATTTTTAGttaaaggtagagtggcgccaatggggaaattgctaaaaaactacttttatggtaccaaaaaaaa
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e cb4.chrX              17347278  97 - 21540570 I
e caeSp111.Scaffold582    193263  81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=-518.000000
s ce10.chrX              2600498 126 + 17718866 acaaatat----catagtaaaacgtttaaaaaaatatttttaaattcactttttggaaaAATT---ATACAATGTTTGAATATTCTA--TAAAACTGGAAGG------AATTTTTGACGACTTTCGAAAAAATGCCAAAAA
s cb4.chrX              17347375 129 - 21540570 acagattttagaCACCTCAAACAGATTGAGATAatcctgtcaaagataatATTCGGTAGTCTTTGAAAACAACGTTTCGCCATGTTAACTCCAATAGAAGGGCGCACTGATTTTCCAC----TTTGAgcaaat--------
i cb4.chrX              I 97 C 0
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e caeSp111.Scaffold582    193263  81 +   484378 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=-7523.000000
s ce10.chrX              2600624 160 + 17718866 ----ttgagatttttccaattttcaaaaa----acgatatcaaatt-----------t----agaattttt--tttttgaatttatttactatgatatttgatgattg-tattacgataagcatgtttt----aaagcaatttccATAAAA----TT--TAAACTTTATGAATCTATTGATTTCGAACTCTCAGTC
s cb4.chrX              17347504 173 - 21540570 tatctcaatttctgtcaaagatatgataaaattaaactgataaattgtttatcatactatcaaaaatgtcagattagttgatttttttcatattagTGGCAGAAAACG-AATAGTGGTACACATTTATT----ACAG--ATTTCAGGGTATATTGTTACCAA----ACCGA----ATTTATttcaaac--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    193344 145 +   484378 ----tcaaaatgtttcatatttttaaaaattctattttaatAACTT-----------tgcgaaaaatttttgaaatctggaTAT-----------------GAAACTGTATTTATGTCACACGGTTATTCAAAACAG-----TTAATGAGAACTGTT--CAAAGTTattga----attaaaataaagt--------
i caeSp111.Scaffold582  I 81 C 0
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I
e caeRem4.Crem_Contig15   157986 297 -  1794024 I

a score=-2345.000000
s ce10.chrX              2600784 7 + 17718866 TCTCATA--
s cb4.chrX              17347677 7 - 21540570 -taaattt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   158283 7 -  1794024 -tttcttg-
i caeRem4.Crem_Contig15 I 297 C 0
s caeSp111.Scaffold582    193489 9 +   484378 ttttattca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3312488 377 -  4147112 I
e caeJap4.Scaffold18213   411822 384 +   720316 I

a score=152304.000000
s ce10.chrX              2600791 326 + 17718866 TTTCAGAAAGGGAAAAAATCCCGGAAGGAACACTTTGCGTGGTATGCAGCGATTTTGCGAGCGGTATTCATTATTCGGTGGCAAGCTGCAACGGCTGCAAGACATTCTTCCGACGTGCCCTCGTAGTGAGTCGATTTTTTT-TTTGCTTTTT-TTCAATCTGATCTGGAAAAATGGG-----GAAGTGTTCCATTTTCTAC------------------GCCACTGGAAT--T--GGCCAAGATTAACGAGC--GAGAGCTAGGGCATTCATCCTGA---------AAATCAAGCATAGTG---AGAGGGCTTTTTT------------------CCTTATTTCTT-----------------TTCTTTTTTTTCAAAAAAAA---AAAAAAAAAGAAGCGCACACG
s cb4.chrX              17347684 308 - 21540570 tttcagaaagggAAAAAATCCCGGAAGGTACGCTTTGTGTGGTATGCAGCGATCTGGCAAGCGGTATTCATTATTCGGTAGCAAGCTGCAACGGCTGCAAGACATTCTTCCGACGGGCTCTGGTTGTAAGTC-----TTTC-------TATT-------CTGAAAAAGCTGAGAAAA------------TGTAGTTTGCCCTCGATAT-----------TGCTCTTGAATCGCGAGGTCAAGATTAACGAGCTGTGCATCTGAGGCATTCATCcttaaaaagagagaaatcaagcgttgtg---tg--------------tgtgtttgtgtgAGATGGCAtttttttCTACATCCTC------TTCCTTCCTT----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   158290 367 -  1794024 ttccagagagagagaaaattcCGGAAGGTACGCTGTGCGTGGTATGCAGTGATTTGGCGAGCGGTATTCATTACTCGGTGGCAAGCTGCAACGGTTGCAAGACCTTCTTCCGACGAGCTCTGGTGGTAAGTC-----TTTC-----CGTATTCCTg---ctgaaaaagggaaaaaaagaaaacaaatg-tgTAGATTGCACCAAGAATGCACCCTTCCCTCCACTTGAAT--CGGGGCCAAGATTAACGAGC--TGAAGCTGAGGCATTCatcctgaaaaaga---aaatcaagcGTTGTG---AGATGActtttctttccgcgtttctct----tttcgtttttttcttcgttttt------ttccttgcctttgaaaaaat------cgagcACACATCCGTACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    193498 333 +   484378 tttcagaaaggGAGAAAATCCCGGAAGGTACTTTATGCGTGGTATGCAGTGATTTGGCCAGCGGTATTCATTATTCGGTGGCAAGCTGCAACGGCTGCAAGACTTTCTTTCGACGTGCCCTCgttgtaagtt-----tttt-cttccttatt-cta---c-gagaaaaaaaaataaa-----caaatg-tGTAGTTTGTACTGAGAttgctctctctt-tccacTTGAAT--CG-GGCCAAGATTAACGGGC--CGAGGCTAAGGCATTCATCCTGA---------AAATCAAGC-----A---AGATGGCTTTTTC---CGCATTTCTCG----TTTagttcttt-----------------ctgtttttctgaaaaaaaat----------aaaaaaggcgTACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3312865 338 -  4147112 tttcagaaagggaaaaaatccCGGAAGGTACACTATGCGTGGTATGTGCTGATTTGGCGAGTGGTATCCATTATTCGGTGGCAAGTTGCAATGGATGCAAGACCTTCTTTCGGAGGGCTCTAGTAGTGAGTG-----TTTCACTTCCTTATT-CTC---Cttctaaagaaaaataaa-----cgaaTG-TGTAGTTTGCACTAAGAATGCTCTTCTCC-TCCACTTGAAT--CA-AACCAAGATTAACGAGC--TGAAGCTGAGGCATTCATCCTGA---------AAATCAAGCGTTGTG---AGATAGCTTTTTC---CGCGtttctct----cttcgtttttt-----------------ttcctatttcttaaaaaaat------------aaatggggTAGG
i caePb3.Scfld02_0      I 377 C 0
s caeJap4.Scaffold18213   412206 311 +   720316 tttcagaaagggAAAAAATCCCTGAAGGCACTTTGTGCGTGGTATGCAGCGACTTGGCAAGTGGTATTCATTATTCGGTGGCGAGCTGCAATGGCTGCAAAACTTTCTTCCGACGAGCTTTAGTGGTGAGAT-----TTTG---------TT-------C---AAAAGTCCACAAAG-----AAAGAG-CTAAGCTTG---------------------CTCTCAGGATT--TACCACCCAAATTAATAGTC----------ATTCATTCATCCGGA---------AAATAATACGTTGTACCCAG--------------cactcttttct----tttctttttttttctcacctttCCCTGACCCTTTTTAAGTAAGaaaagagcaaaagagcaaaaaag------
i caeJap4.Scaffold18213 I 384 I 51

a score=-682.000000
s ce10.chrX              2601117 48 + 17718866 TCTCCTCAAGTTAATGCACAAGTAGGCTTTTCCATCCGC---AATTGGGCG----
s cb4.chrX              17347992  9 - 21540570 -----------------------GGGACCttc-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   158657 46 -  1794024 TCGTCTTGAGTT---------GGGGGACCCTCAGTTCTTTAGAATTggcctcttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    193831 43 +   484378 TCGTCTCGAGTT-----------GGGACCCTCTATTTCCTTCAATTggccg-ttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3313203 40 -  4147112 CAAGCTTGAGTT-----------GGGACCCTCCATTCTCTTGAATTGGTCG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   412517 51 +   720316 I

a score=165786.000000
s ce10.chrX              2601165 842 + 17718866  
s cb4.chrX              17348001 709 - 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   158703 865 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 98
s caeSp111.Scaffold582    193874 828 +   484378  
i caeSp111.Scaffold582  C 0 I 30
s caePb3.Scfld02_0       3313243 816 -  4147112  
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18213   412568 757 +   720316  
i caeJap4.Scaffold18213 I 51 C 0

a score=-18122.000000
s ce10.chrX              2602007 69 + 17718866 -TAACTTTTTTTCAAATTAAAAT-------------ACGTATAGAA-TTAA-------------GTAATGTCCTAG--TTTTTTGGTGGAAAATTGGAA
s cb4.chrX              17348716 44 - 21540570 -----TAACTTCAACTTTGTCAT-------------AAGTTTCTGA-TTGA-------------GTGACATTataa-----------------------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold582    194732 87 +   484378 -TGATTTATTATAACTTCGTCATAGCACCACACGCAGACTCTCTGC-ACGAAAC----ATTCTCATGACATTTTAGAATTAGTTGAAGG------gggg
i caeSp111.Scaffold582  I 30 C 0
s caePb3.Scfld02_0       3314083 93 -  4147112 -TGATTTATTATTACTTCGTCATTGCAGCACTAG--AATTGCCTACTTCGAAac---aattctcaaaacattCTAGAATTAGTTGGGGGTGTAGcgtag
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold18213   413325 65 +   720316 TTACGTCTTTCCGTCCATGCAAT-------------AAACATA-AT-TTGAGACGGAAATTGGTCGTTTGTCTTAAAATT-------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   159568 98 -  1794024 I

a score=12701.000000
s ce10.chrX              2602076 44 + 17718866 AATAAATTAAATTTTTTCTCGGGGCGCGGT----TGT-----CGATTTTTTGG
s cb4.chrX              17348760 31 - 21540570 -aataattgaatttcctt----------------ttt-----caatttttcgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   159666 53 -  1794024 AGGAAACTTAATTTCTTTACGGGGCGCGGCTAAATTTGAGACCGATTTTTTGG
i caeRem4.Crem_Contig15 I 98 C 0
s caeSp111.Scaffold582    194819 50 +   484378 --aaaattgaatttcttctcgGGGCGCGGCCAATTTTGAGA-CGATTTTTTGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3314176 50 -  4147112 --aaaattgaatttctttctTGGGCGCGGTCTATCGTAGAA-CGATTTTTTGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   413390 31 +   720316 --------CAATTACCTT-GTGGGTGCGG-------------CGATTTTTCAT
i caeJap4.Scaffold18213 C 0 I 175

a score=7387.000000
s ce10.chrX              2602120 69 + 17718866 TCAGTTGAACTGATGGAATGCATTGCAAAAAAATAGAAAAAATTTGAAAGAAATGTG-----AAATGATGTTTG
s cb4.chrX              17348791 42 - 21540570 ttaGTTGAACCTTTGGaatgtg-----------aaaaaaagggact----gtttttt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   159719 46 -  1794024 CCAGTTCAACTGTTGGAATTTG-----------TTGGGAGGGGTTCAGAAGTATTTG-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    194869 71 +   484378 TCAGTTGAACTGTTGGAATGcgttg---aagaaaagaagggggTTCACAAATAAGTGATCGAAAGTGATCTTTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3314226 59 -  4147112 TCAGTTGAACTGTCGGAATGCGT----------AAAAAAGAGGttcagaaatatttg-----aagTGATCTTTG
i caePb3.Scfld02_0      C 0 I 116
e caeJap4.Scaffold18213   413421 175 +   720316 I

a score=-13209.000000
s ce10.chrX              2602189 82 + 17718866 CTACCTATTGGAAAGGAATACAAGAACAGATAAGTTCTATTCATATTTTTTTT-------ATTCTGAAACTAATCCAGCATTTTCTGAG-
s cb4.chrX              17348833 44 - 21540570 ----tc----------------------------------ttattttttctcc----taACTTTTGAAACGATCTT----TGCTTCTGAA
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig15   159765 59 -  1794024 ----TCATCAAAA---------------------------TGATCTTTGCTTCGacatgaatgaaaaaatgaacgtCACATACTTTTTAC
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    194940 14 +   484378 -------------------------------------------------CTTT----CAATAGATAA-----------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3314285 116 -  4147112 I
e caeJap4.Scaffold18213   413421 175 +   720316 I

a score=-4990.000000
s ce10.chrX              2602271 75 + 17718866 AATTGATTATCTGAAAAATGTTCAGCTatgccgcacattttgagccctacaatgtttcaacacaaataattaaaa
s caeRem4.Crem_Contig15   159834 30 -  1794024 -------------------------------------ttctttg----acAAGGT----ACTCAGACTATGAAAA
i caeRem4.Crem_Contig15 I 10 C 0
s caeSp111.Scaffold582    194954 26 +   484378 ---------------------------ACGTCACATACTCTT------------------CTCCGATTTTA----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3314285 116 -  4147112 I
e caeJap4.Scaffold18213   413421 175 +   720316 I
e cb4.chrX              17348877 53 - 21540570 I

a score=-3324.000000
s ce10.chrX              2602346 20 + 17718866 caaaattaaagt---aaaaaatc
s caeRem4.Crem_Contig15   159864  4 -  1794024 C-------------------TTC
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    194980  2 +   484378 ---------------------TC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   413596 17 +   720316 ------caaaattcaaagaaatc
i caeJap4.Scaffold18213 I 175 C 0
e caePb3.Scfld02_0       3314285 116 -  4147112 I
e cb4.chrX              17348877 53 - 21540570 I

a score=-2000.000000
s ce10.chrX              2602366 15 + 17718866 gtggaaaattttttt
s caeRem4.Crem_Contig15   159876 14 -  1794024 -TGTACAACATGTTT
i caeRem4.Crem_Contig15 I 8 I 10
s caeSp111.Scaffold582    194982  5 +   484378 ----------GGTTT
i caeSp111.Scaffold582  C 0 I 10
s caeJap4.Scaffold18213   413613 10 +   720316 ctcgaaaatt-----
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3314285 116 -  4147112 I
e cb4.chrX              17348877 53 - 21540570 I

a score=-15347.000000
s ce10.chrX              2602381 48 + 17718866 tt-------------ggttgacttccaaaattatgagtggtaaatgaaaaaaaaaacacag
s cb4.chrX              17348930 35 - 21540570 TT-------------GGTTTTCTGCC----------TTGGGCAATGAAAACAGATGGA---
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig15   159900 26 -  1794024 TT-------------CGttat----------------------atgaaaacaaaaacgcaG
i caeRem4.Crem_Contig15 I 10 I 25
s caeSp111.Scaffold582    194997 32 +   484378 CTTCCATTATGAAAACgtttg---------------------agagaaaacga--------
i caeSp111.Scaffold582  I 10 C 0
s caePb3.Scfld02_0       3314401 19 -  4147112 ct-------------cttttc---------------------aaaaaacacga--------
i caePb3.Scfld02_0      I 116 C 0
s caeJap4.Scaffold18213   413623 22 +   720316 ---------------------------------------gtaaaaagaaatcaaaatattg
i caeJap4.Scaffold18213 C 0 C 0

a score=-4576.000000
s ce10.chrX              2602429 33 + 17718866 gcaatttttgacagaaaataaaaaaattccaaa
s cb4.chrX              17348965 32 - 21540570 -ACCGATTTTCAGGGAAGGGGTGAAAAAGCAAA
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582    195029 25 +   484378 --------tGCCACATGTTACtcaaactttaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3314420 19 -  4147112 --------------aTAACACTGAATTATTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   413645 19 +   720316 --------------gcaacaaaaaaaatgaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   159926 25 -  1794024 I

a score=161749.000000
s ce10.chrX              2602462 306 + 17718866 atttttttgaaaagcttcattatgatatttggtACGCTAGCACAACTCCACAGTTTAACCTATTACATTTTTTTTTCAGCGATCCAACATGATCGAGACAAAATCCGATATACGAAAGCTCTCAAAAAGAAACGGGAAGAAGAAAAACGGTTAAAAGAAATGGTAATAAAAGAGGATATTGGAAGCCCCCAAAGTATCGCATCTGACACATATATCAACACATCTACTCCATCATCTAGCACTATGATCAA---CATTTTAGAAAACGATCAT--CATTCTT---ATGATCCCGAAGCACAGGT-----------------------ATATATCATC
s cb4.chrX              17348998 255 - 21540570 ATTTC---------------------------TAAGTTAA---------------------------TGGTTTTTTAAGCCATCCAACATGATCGAGACAAAATCCGGTACACAAAAGCGCTCAAGAAAAAgcgggaagaagaaaaacggtTAAAAGAAGTGGTCATCAAGGAGGAGATTGGAAGTCCGCAAAGTATCGCTTCGGACACCTACATTAACACATCAACTCCATCATCCAGCACAATGCTTCATTTTATGATTGAACAGGACCAT--CACTCATCAATGGACCCTGAAACACAGGT--TGGAAGC------------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   159951 282 -  1794024 ATTTCCatgaaacaattc------aaaaactgcaaattcg---------------------------ATATTATTTCAGCAATCCAACATGATCGAGACAAAATCCGGTACACaaaagctcttaaaaagaagcgggaagaagaaaaacggttaaaagaagtgattatcaaagaagaTATCGGAAGTCCACAAAGTATAGCATCTGATACATATATAAACACGTCAACCCCATCATCTAGTACTATGGTGAATTGTATGGTAGAACACGACCAT--CCCTCAT---TAGATCCCGATGCTCAGGT--TGGTTGAT----ATATGTTC-----------
i caeRem4.Crem_Contig15 I 25 I 17
s caeSp111.Scaffold582    195054 257 +   484378 ---------aatgaaagc------tTAGGTTATTAGCtaa-----------agt-------------tttctgtttcagcaATCCAACATGATCGGGACAAAATTCGGTATACGAAAGCACTTAAGAAGAAgcgggaagaagaaaaacggttAAAAGATACAGTTATCAAGGAGGAGATTGGAAGTCCACAGAGTATTGCATCGGATACATATATAAACACATCTACTCCATCATCTAGTACTATGATTAA---TATTGtagaaaatgatcat--ttaTCGT---TTGACCCTGATGCACAGGT---------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3314439 233 -  4147112 ---------AGTA------------------------------------------------------TATTTATTCCAGCAATACAACATGATCGAGACAAAATCAGGTATAcaaaagcgctcaagaaaaaacgggaagaagaaaaacggttaaaagaaacaatcatcaaagaagaagttggaagTCCTCAGAGTATTGCATCAGACACGTATATAAACACATCTACACCTTCATCAAGTACAATGGTTAA---CATGATAGACAATGATCAT--CCATCCT---TTGACCCTGATGCACAGGT---------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   413664 260 +   720316 ------------------------------------------------------------------------tttttagccATCCAACATGATCGAGACAAAATACGGTACACaaaagcgttgaaaaagaagcgggaagaagagaagcggttaaaagagagtgtcatcaaagaagaaattggaagTCCTCAAAGTATATCATCAGACACATATATTAACACGTCCACGCCTTCTTCGAGTACAATGGTTAA---TGTGACAGACAACGATAATGGCCATAAT--GTAGATCCAGAGACACAGGTATTAGAAGCTTCTGAGAAAACAAGAATATCATC
i caeJap4.Scaffold18213 C 0 C 0

a score=-10328.000000
s ce10.chrX              2602768 26 + 17718866 ATTGTTCGTGCATCACTTTGTAAAAA
s cb4.chrX              17349253  9 - 21540570 -----------------TGACACCAA
i cb4.chrX              C 0 I 26
s caeSp111.Scaffold582    195311 12 +   484378 -TGGTT-----GTCGCTT--------
i caeSp111.Scaffold582  C 0 I 19
s caePb3.Scfld02_0       3314672 17 -  4147112 -TGGTT------TCACTTTacat--a
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18213   413924 10 +   720316 ------TATAAATCAA----------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   160233 17 -  1794024 I

a score=19084.000000
s ce10.chrX              2602794 321 + 17718866  
s cb4.chrX              17349288 314 - 21540570  
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig15   160250 420 -  1794024  
i caeRem4.Crem_Contig15 I 17 I 71
s caeSp111.Scaffold582    195342 396 +   484378  
i caeSp111.Scaffold582  I 19 C 0
s caePb3.Scfld02_0       3314706 407 -  4147112  
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18213   413934 480 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-22785.000000
s ce10.chrX              2603115  64 + 17718866 -----AACAGCCCCCCCCCCC------------------------------------------CCTCCCCAAACTAGGATATGTGTTAAGAAAAGGCGCAACAAGGCAAGA
s cb4.chrX              17349602  16 - 21540570 ------------------------------------------------------------------------------------------AACAGGCTCTAGCTGA-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    195738  41 +   484378 -----------------------------------------------------------------ACGCTGAGA--AAATGCGTGTT-CGCGTGCGTTCGAACTGACaa--
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3315113  43 -  4147112 -----------------------------------------------------------------ATGCTGAAAAGAAATGCGTGTCGTTCGTCCGTTCGAACcca-at--
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   414414 104 +   720316 gaatttgcagcgctccctACTGAGAATATCTGTAAATTAGGAGTGTCGTGTGTTGCCGATGTGTAGCGCTGAAA--AAATCGCTATAATAGTTGGGTGTAGCCAGA-----
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   160670  71 -  1794024 I

a score=131255.000000
s ce10.chrX              2603179 298 + 17718866 -----------------------------AAAGGAAAAAGTTCAAACCGAGG--GT---GGTTGCAA---------------ACGAAAAAGAAGAGAGAAAAAAGGAAGAAAAACGAAG-------------ATCTCATC---AT---------A----AAA---AAT-TTTCAAATGCA-TGTAGCTTTTTATTTTTCAGCTGCTTACTGGATGACATCACATATATGGCAGAAAACACACATGAAAACGAGGGCACAATTGAACCATTCGAGTGTTCTGTGGAGAAGCTGAGGGAATGGTTTGTGCGAGATTTGTCGTTAATGCTCGAATGGGGCAAGTGCTTACCGATTATGGAAAGGTTACTACTCAACGACAAGGT
s cb4.chrX              17349618 287 - 21540570 -----------------------------AAAGCTTGAGGTCCAAACTAGCTTag-----------------------------------gcgaaaaaaagaatgCAAGACCAGAGAAGG----------GTGTCTTCAC---CA---------gatgaaaaatacat-tttcgaACACA-TAGTCT------ACTTTCAGCTGTTTACTCGATGACATCACGTATATGGCAGAGAACTCGGCGCCGCATGAGCAACCGGCAGAACCGTTCGAGTGTACAGTAGCAAAGTTGAGAGAATGGTTTGGAAGGGATTTGTCGTTGATGTTGGAATGGGGCAAGTGTCTGCCGATTATGGAAGGATTACTGTTGAATGATAAGGT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   160741 248 -  1794024 -----------------------------atAGAAACAAGTTTGAACCAGTT------------------------------------------------------------------------------GTGTTTGCAG---AA---------G----GAAGTGAAT-TTTCTAATGca-tgtatt--------tttcagctgcTTACTGGATGACGTGTCATATATGGAAGAGAACACAATGCCGCAAGAATCAACGGTGGAACCATTCGAGTGCTCTTTAGAGAACTTGAGAGAATGGTTTGTGAGGGATCTCTCATTAATGCTGGAATGGGGAAAATGTTTGCCGATCATGGAAGGATTATTGTTAAATGATAAGGT
i caeRem4.Crem_Contig15 I 71 I 2
s caeSp111.Scaffold582    195789 286 +   484378 -----------------------------aaagaactaagatgaaaataaga--ac----------------------------------gaagaaaaaaacaggctggaaagacgaagA----------GTGTCTGTTG---AA---------G----GAAGTGGAT-TTAGAAATGCattgaagtttt---catttcagttgtCTACTGGATGATATTACGTGGATGGCCGAAAACTCATTACCGCAGGAACAAACAGTTGATCCATTCGAAtgtactgtagaaaaattgagagaatgGTTCGTGCGAGATCTATCGTTAATGCTGGAATGGGGGAAGTGCTTACCGATTATGGAAGGACTGTTGTTGAACGACAAGGT
i caeSp111.Scaffold582  I 10 I 6
s caePb3.Scfld02_0       3315163 281 -  4147112 -----------------------------aatgaaccaaaaaaggaaaaata--g-----------------------------------aaagagaaaacaaggCTGAACCAACG----------------GTCTCTTGCAAAA---------G----gaagtgaat-tttcaaatgca-tgtagtttt---tctttcagttgcTTACTGGATGACATCACGTATATGGCAGATAATACACATCCGATTGAAGCGATAATCGATCCATTCGAGTGTACTGTAGAAAAACTTAGAGAATGGTTTGTGCGAGATCTCTCATTGATGCTGGAATGGGGAAAGTGTTTACCCATCATGGAAGGACTGCTGTTAAATGATAAGGT
i caePb3.Scfld02_0      I 7 I 473
s caeJap4.Scaffold18213   414518 365 +   720316 AGCGCTTGTTGTTTTCAGATTTTCTGCTGAAAGAAAAAGGAGTTACTGACTG--ACTCGGCTTGTAGCGACAAATAAGTAGCAGAAAATAAGAGAGAAAACAACgctaaaacagaaaaaataacacatttaCGCCTGCAG---AGTGCAGACGCG----GAAGCATCTCTTTCAaatgca-tgtttt------tttttcagctgcTTGCTAGATGACATCACGTGGATGACGGAAAATACGCAGCCTCAGGAGACAACGGCGGAACCCTTCGAATGTTCGGTTCAAAACTTGAGGGAATGGTTTGTTCGGGATCTTTCATTGATGCTCGAGTGGGGTAAATGCTTGCCGATTATGGAAGGATTGTTGTTGAACGACAAGGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-10482.000000
s ce10.chrX              2603477 25 + 17718866 -------ATGCTAA-----AATTATTTAATA---CAATCT
s cb4.chrX              17349907 33 - 21540570 -------GagttagagaaaaaattgggaatcaCGCGATAT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   160991  7 -  1794024 -------GTTTCGG--------------------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    196081 30 +   484378 -------ACGTTTGAACGAAATTATCGAGTT---TGTTGT
i caeSp111.Scaffold582  I 6 C 0
s caeJap4.Scaffold18213   414883 23 +   720316 AGACAAGGAATTAAAAATAAGCT-----------------
i caeJap4.Scaffold18213 C 0 I 18
e caePb3.Scfld02_0       3315444 473 -  4147112 I

a score=-1222.000000
s ce10.chrX              2603502  7 + 17718866 TTTAAAT---------
s cb4.chrX              17349940 12 - 21540570 TTTCAATGC----AAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   160998 16 -  1794024 TTCCAACTCTTCAAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    196111  7 +   484378 TTTAAAT---------
i caeSp111.Scaffold582  C 0 I 50
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I

a score=302.000000
s ce10.chrX              2603509 2 + 17718866 TT
s cb4.chrX              17349952 2 - 21540570 CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   161014 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 I 69
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I
e caeSp111.Scaffold582    196118 50 +   484378 I

a score=501.000000
s ce10.chrX              2603511 53 + 17718866 ATCTTTTGAGTTCGTGGGGATAGCTCTAAAATTGCCAAAAAAATAGCATTTAA
s cb4.chrX              17349954 29 - 21540570 Atctt-----------------gttttaaaatttcaaaa-------catttaa
i cb4.chrX              C 0 I 11
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I
e caeSp111.Scaffold582    196118 50 +   484378 I
e caeRem4.Crem_Contig15   161016 69 -  1794024 I

a score=0.000000
s ce10.chrX              2603564 21 + 17718866 CCATAAAAAAACGTGGAGGAA
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I
e cb4.chrX              17349983 11 - 21540570 I
e caeSp111.Scaffold582    196118 50 +   484378 I
e caeRem4.Crem_Contig15   161016 69 -  1794024 I

a score=-6481.000000
s ce10.chrX              2603585 754 + 17718866  
s cb4.chrX              17349994 481 - 21540570  
i cb4.chrX              I 11 C 0
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906  18 +   720316 I
e caeSp111.Scaffold582    196118  50 +   484378 I
e caeRem4.Crem_Contig15   161016  69 -  1794024 I

a score=-528.000000
s ce10.chrX              2604339 20 + 17718866 TTTTTTAGTGATTAACTTTA
s cb4.chrX              17350475  6 - 21540570 ttt-------------ttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   161085 19 -  1794024 TTTCTAAccaatcaacttt-
i caeRem4.Crem_Contig15 I 69 C 0
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I
e caeSp111.Scaffold582    196118 50 +   484378 I

a score=0.000000
s ce10.chrX              2604359 7 + 17718866 TCTTTAA
e caePb3.Scfld02_0       3315444 473 -  4147112 I
e caeJap4.Scaffold18213   414906 18 +   720316 I
e cb4.chrX              17350481 0 - 21540570 C
e caeSp111.Scaffold582    196118 50 +   484378 I
e caeRem4.Crem_Contig15   161104 0 -  1794024 C

a score=194741.000000
s ce10.chrX              2604366 305 + 17718866 TTCCAGCTTGCCCTGATGAAAGCTTTCGCACCAATATTTCCATTGATTCAACTAGCATTCTACACGAGAAACGAATTTGAATGTGATATTGTGATAAGTGAG----TTTCTGAAACATGCAACA--ATTCTGAAAAACATGTTTT-CAAACTTTCAGAACTCGAACCGGATTGTACGCCTAAACCAATTCCAGAACGGCTCAATTATCCAGATGGCTCATTTATCGAAAAGGGCAATAAGCCAGCGAATACTTGGTAAGCCAAC-CAATCTCCTCAG---ATTCTGCTTTTTCTCGCGCT------TTTCTCCGATTTATTC
s cb4.chrX              17350481 279 - 21540570 tttcagctggcACTGATGAAAGCTTTTGCCCCAATATTTCCGCTTATTCAATTAGCATtctacacaaaaaatgaatttgattGCGACATTGTAATAAGTGAG-----TCCGAAAAGATctaac---attgaaaaaaaccaatttcgtCT------AGAAATGGAGCCCGACTGCACACCGAGACCAATCCCAGAGCGTCTCAATTATCCGGACGGCTCGTTTATTGAAAAGGGTGACAAGCCGACGAATTCATGGTGag-----------------------cttccttttttttgcaat------ctTCGTAGGCTAGTCT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig15   161104 304 -  1794024 tttcagctggCACTCATGAAAGCCTTTGCCCCAATATTCCCGCTTATTCAATTAGCTTTCTACACAAAGAACGAGTTTGAGTGTGATATTGTAATAAGTAAG-----TGCAAAGGGATTTTATGAGAGCGAGAAAAACCCAATTCGTCTTATTTCAGAGCTCGAGCCAGATTGCACCCCAAAACCAATACCAGAGCGGCTCAATTATCCGGACGGCTCATTCATCGAGAAAGGAGGAAAACCAGCCAATTCATGGTGAGCCAtctcaatcttct-------tcttcttcttcttaaaaat------cttctgtgtttttttt
i caeRem4.Crem_Contig15 C 0 I 14
s caeSp111.Scaffold582    196168 296 +   484378 tttcagCTGGCACTAATGAAAGCTTTCGCTCCAATATTCCCTCTTATTCAATTAGCGTTCTACACAAAAAACGAGTTCGAATGTGATATTGTAATAAGTGAG-----TCTAAAAGATGTCTC----ATC-----aattctcatct-ttttttttcagagctcGAGCCGGATTGTACGCCGAAACCAATTCCAGCGAGGCTCAATTATCCAGACGGCTCTTTCATtgaaaagggagaaaaacCAACCAATTCATGGTGAGCAATCTcaatcttctt-----caaattcccttcctcgtttt------ttcttcttcttctttt
i caeSp111.Scaffold582  I 50 I 16
s caePb3.Scfld02_0       3315917 289 -  4147112 tttcagctggcACTCATGAAAGCTTTCGCTCCAATATTCCCACTCATTCAATTAGCGTTCTacacaaaaaacgattttgaatGCGACATTGTAATAAGTAAG-----TACAAAAAGATTCCA----ATC---CAGAATCTCAtctgttttctttcagagCTTGAGCCGGATTGTACGCCAAGGCCGATTCCAGAGCGTCTCAATTATCCAGACGGCTCTTTCATCGAGAAAGGGGGAAAACCAACTAATTCATGGTGAGCCatctcaatctttt---------------ttcttcggact------cttctttgtttttttt
i caePb3.Scfld02_0      I 473 I 14
s caeJap4.Scaffold18213   414924 313 +   720316 TTTCAGCTAGCCTTGATGAAAGCATTTGCTCCGATATTTCCACTTATCCAGTTAGCGTATTACACGAGGAATGAATTTGAATGTGATATTGTgataagtgagtttttttctgaactCCGTTGTG--AATATGTACAACTTAAATT-----TTTGCAGAGCTTGAACCGGATTGCACACCAAAACCGATTCCAGAGCGGCTCAATTATCCAGACGGCTCATTTATCGAGAAGGGTGAAAAGCCAGCCAATTCATGGTGAGTCATTTT--TCTTCTCATtccatcttctttttttttgaaacggacGAATCCGTCATTTTATTG
i caeJap4.Scaffold18213 I 18 C 0

a score=-5230.000000
s ce10.chrX              2604671 22 + 17718866 -TTCCTACTTGGC--AAGGG----CTCTC
s caeRem4.Crem_Contig15   161422 17 -  1794024 -tCTCAATAT------GGGGTTTC-----
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582    196480 13 +   484378 -tctcaatat------GGGG---------
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3316220 14 -  4147112 -ttcaaatatg-----gGGG---------
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18213   415237 20 +   720316 TTCTTCATCTTATAGAAAGG---------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17350760 25 - 21540570 I

a score=229261.000000
s ce10.chrX              2604693 437 + 17718866  
s cb4.chrX              17350785 506 - 21540570  
i cb4.chrX              I 25 I 4
s caeRem4.Crem_Contig15   161439 507 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    196493 501 +   484378  
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3316234 520 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   415257 473 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-3937.000000
s ce10.chrX              2605130 27 + 17718866 -TGTTTCAGGGGTTT--CAACTATTTGGAA
s cb4.chrX              17351295 23 - 21540570 -AACCCCAAAGG------AACtgtttggaa
i cb4.chrX              I 4 I 14
s caeSp111.Scaffold582    196999 17 +   484378 -ATTCctaa------------tttttatca
i caeSp111.Scaffold582  I 5 I 4
s caeJap4.Scaffold18213   415730 30 +   720316 TAATTGAAAATATGCAgaaattataatgaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3316754  0 -  4147112 C
e caeRem4.Crem_Contig15   161946  0 -  1794024 C

a score=-98.000000
s ce10.chrX              2605157 7 + 17718866 GGAATTA-
s caeSp111.Scaffold582    197020 7 +   484378 aaaattc-
i caeSp111.Scaffold582  I 4 C 0
s caeJap4.Scaffold18213   415760 7 +   720316 -aaatttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3316754 0 -  4147112 C
e cb4.chrX              17351318 14 - 21540570 I
e caeRem4.Crem_Contig15   161946 0 -  1794024 C

a score=273.000000
s ce10.chrX              2605164 3 + 17718866 TTT
s caeJap4.Scaffold18213   415767 3 +   720316 ttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3316754 0 -  4147112 C
e cb4.chrX              17351318 14 - 21540570 I
e caeSp111.Scaffold582    197027 0 +   484378 C
e caeRem4.Crem_Contig15   161946 0 -  1794024 C

a score=0.000000
s ce10.chrX              2605167 957 + 17718866  
e caePb3.Scfld02_0       3316754   0 -  4147112 C
e caeJap4.Scaffold18213   415770   0 +   720316 C
e cb4.chrX              17351318  14 - 21540570 I
e caeSp111.Scaffold582    197027   0 +   484378 C
e caeRem4.Crem_Contig15   161946   0 -  1794024 C

a score=-2965.000000
s ce10.chrX              2606124 36 + 17718866 ----aatt-tatattCACACAAAAACATAAATGACCC----TATG
s caeRem4.Crem_Contig15   161946 36 -  1794024 ATTTATTCATGTAAACTTTCCAATCt-----taatctctct----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3316754 32 -  4147112 ----ATTC-TATAACTATAACAAGataagaataattt--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   415770  0 +   720316 C
e cb4.chrX              17351318 14 - 21540570 I
e caeSp111.Scaffold582    197027  0 +   484378 C

a score=546.000000
s ce10.chrX              2606160 2 + 17718866 TT
s caeSp111.Scaffold582    197027 2 +   484378 tt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3316786 2 -  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   415770 0 +   720316 C
e cb4.chrX              17351318 14 - 21540570 I
e caeRem4.Crem_Contig15   161982 0 -  1794024 C

a score=180.000000
s ce10.chrX              2606162 1 + 17718866 A
s cb4.chrX              17351332 1 - 21540570 a
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold582    197029 1 +   484378 a
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3316788 1 -  4147112 g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   415770 0 +   720316 C
e caeRem4.Crem_Contig15   161982 0 -  1794024 C

a score=173826.000000
s ce10.chrX              2606163 543 + 17718866  
s cb4.chrX              17351333 567 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   161982 478 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    197030 440 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3316789 477 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   415770 480 +   720316  
i caeJap4.Scaffold18213 C 0 I 29231

a score=607.000000
s ce10.chrX              2606706 16 + 17718866 TAAAGACATTACAAGT
s cb4.chrX              17351900  9 - 21540570 TAAAGACTT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   162460  9 -  1794024 TAAACACGT-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    197470 16 +   484378 TACAGACGTTTAACGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3317266 16 -  4147112 TAATGACTCTGGAAGT
i caePb3.Scfld02_0      C 0 I 874
e caeJap4.Scaffold18213   416250 29231 +   720316 I

a score=711.000000
s ce10.chrX              2606722 14 + 17718866 TTTTTGTTTTCATT-
s cb4.chrX              17351909 14 - 21540570 TTACTGtcttgttt-
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   162469 14 -  1794024 TTTGTGTCTTTGTT-
i caeRem4.Crem_Contig15 C 0 I 782
s caeSp111.Scaffold582    197486 11 +   484378 ----TGTCCTTCGTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3317282 874 -  4147112 I
e caeJap4.Scaffold18213   416250 29231 +   720316 I

a score=575.000000
s ce10.chrX              2606736 3 + 17718866 TTT
s cb4.chrX              17351928 3 - 21540570 ttt
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold582    197497 3 +   484378 TCT
i caeSp111.Scaffold582  C 0 I 452
e caePb3.Scfld02_0       3317282 874 -  4147112 I
e caeJap4.Scaffold18213   416250 29231 +   720316 I
e caeRem4.Crem_Contig15   162483 782 -  1794024 I

a score=-6454.000000
s ce10.chrX              2606739 1086 + 17718866  
s cb4.chrX              17351931 1061 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3317282  874 -  4147112 I
e caeJap4.Scaffold18213   416250 29231 +   720316 I
e caeSp111.Scaffold582    197500  452 +   484378 I
e caeRem4.Crem_Contig15   162483  782 -  1794024 I

a score=-1947.000000
s ce10.chrX              2607825 35 + 17718866 TTGAA--ATCTTCTTTACT--CAGTGTTT-ACACAACATG--
s cb4.chrX              17352992 39 - 21540570 TTCAGCCATTTTCGTTACTATCCGCGGCT-GCTTCCCACG--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   445481 36 +   720316 TTGAA--AATTTCCTT--T--TAGAGTTTCGTTTCGAATATT
i caeJap4.Scaffold18213 I 29231 C 0
e caePb3.Scfld02_0       3317282 874 -  4147112 I
e caeSp111.Scaffold582    197500 452 +   484378 I
e caeRem4.Crem_Contig15   162483 782 -  1794024 I

a score=-959.000000
s ce10.chrX              2607860 5 + 17718866 --CATCC
s cb4.chrX              17353031 5 - 21540570 --CCTCC
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold582    197952 5 +   484378 --CATAC
i caeSp111.Scaffold582  I 452 C 0
s caeJap4.Scaffold18213   445517 5 +   720316 GATGT--
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3317282 874 -  4147112 I
e caeRem4.Crem_Contig15   162483 782 -  1794024 I

a score=-1173.000000
s ce10.chrX              2607865 30 + 17718866 TTTAACATTTCTAGAAACATAC---GTTTCAGA
s caeSp111.Scaffold582    197957 26 +   484378 TTTCACTCTTCCAGTGTTAT-------TTGGGC
i caeSp111.Scaffold582  C 0 I 1
s caeJap4.Scaffold18213   445522 32 +   720316 TTTCTCACTTTCAGACCAACGCCATTGTTGAG-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3317282 874 -  4147112 I
e cb4.chrX              17353036 19 - 21540570 I
e caeRem4.Crem_Contig15   162483 782 -  1794024 I

a score=-1752.000000
s ce10.chrX              2607895 2 + 17718866 -TG
s cb4.chrX              17353055 2 - 21540570 -TG
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig15   163265 2 -  1794024 -TA
i caeRem4.Crem_Contig15 I 782 C 0
s caeSp111.Scaffold582    197984 1 +   484378 -T-
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   445554 2 +   720316 TT-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3317282 874 -  4147112 I

a score=350530.000000
s ce10.chrX              2607897 620 + 17718866  
s cb4.chrX              17353057 597 - 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   163267 592 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    197985 582 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3318156 620 -  4147112  
i caePb3.Scfld02_0      I 874 C 0
s caeJap4.Scaffold18213   445556 630 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-31662.000000
s ce10.chrX              2608517 129 + 17718866 ACTGGTAAATGTTTGAAATAGGGACCATCAGGTTTGGAGATGTTTATTTTTTCTACTTGAACAAAAACTAAAAAACGGCAAAAATTGTCACAGAGCTGTTTTTGCTACGTGGCCTAGAA----------------------------------------AAATTTAAAA
s cb4.chrX              17353657 143 - 21540570 GCAAATTAACAACTAAAAATTGAAGC--CAGATACAGA---------------------AACGACCAATAGtaaatgccaaaaaatgtttttcaattgattt---tcggCGATTTTGACAATATCcaggagtctgaagctcgattgtcaagttttcaatcactttgaaa
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   163861   6 -  1794024 -----------------------------------------------------------------------------------------------------------------TTTGAC--------------------------------------------------
i caeRem4.Crem_Contig15 I 2 C 0
s caePb3.Scfld02_0       3318776   8 -  4147112 ---------------------------------------------------------------------------------------------------------------CCTTAGAG--------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446186  35 +   720316 ------------------------------------------------------------------------------------------TTTATTTAATATGATTACACAAGTTAAAT--------------------------------------------CTAAAA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    198567   0 +   484378 C

a score=-7353.000000
s ce10.chrX              2608646  8 + 17718866 CT----------------CGGCCA-----------------------------------------
s cb4.chrX              17353800 65 - 21540570 attatcgagGGGATAAAACAGacttagattgaaaacttataGTTAGCACTGGcagaacttttcga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   163867  7 -  1794024 ------------------CGGTCTC----------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3318784  4 -  4147112 ------------------cagt-------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   446221  0 +   720316 C
e caeSp111.Scaffold582    198567  0 +   484378 C

a score=-52495.000000
s ce10.chrX              2608654 154 + 17718866 ATGCATTAACTTTGATTTTTCACTGTAAATGTTTCTGAAACTGGACTAATTTG--------------------------------------------------------------------------------------------GTA--TTGAAAAGGGTATCTATAGAAATTGCTCAAAATAAACACTAATTACCGTGAAC----------------ATG-----AAACCTCAACTTTT--------------------AATAAAATGATGTATGATTTAAGTAAAT
s cb4.chrX              17353865 280 - 21540570 aagttccTAGTTTGTTAGCTAGTTGCCGATTTCTGTAAGACCTTCACGTTTTTTGTACGAAAACGTGCCAACAGGCAGTGTCTTCCAGAAACCTGCgaatagctaaaaaactagacatttacaaaaaattctgcaccgatccaaagtt--ttcaaggtgg-----acggaaacttgacagccaagcatcagactcctgaaaatggtcgaaatggtcaaaaatcaaccgaaaattaatttttctatatctttaTTGATCAGCACTGTAGTTAATCAACAAGT--GCTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   163874  46 -  1794024 ----------------------------ATTTCTTCTAGActt------------------------------------------------------------------------------------------------------gtt--tt-------------------------------------------------------------------aat------aaaattagTTTAT--------------------ACTGCCCTT------------------T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    198567  33 +   484378 ------------------------------------------------------------------------AGGC---------------------------------------------------------------------ATTAACT-------------------------------------------------------------------AGT-----GGATTTTAAGAAAG--------------------AATG-----------------------T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3318788  27 -  4147112 -------------------------------------------------------------------------------------------------------------------------------------------------gtt--ct-------------------------------------------------------------------gaa-----aaatattaatccTG--------------------AACT-----------------------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   446221   0 +   720316 C

a score=151838.000000
s ce10.chrX              2608808 234 + 17718866 TTCAGATCACCAAGAGTGTTCCTCTTATCGACTATTCCGGAGAGTGTCACTTTGAGCAAACATTCAGAACCCGTGAGGAAAAGTA---AC---------CAATTTTAAAT--------CGAAAAAATTCAGGCTCACCCTCAAAA----ATTTTCAGGCCTGTGCACCTTCATATGTTGGACATTCTCATCAACAACAGTGTTGGCCTAGTCAATATGGACATTTCAAAAAACATAACCGTCGATTTTGAGAAGTAGG
s cb4.chrX              17354145 229 - 21540570 TTCAGATCACTAAGGCGGTCCCACTAATCGATTATTCTGGAGAATGCCATTTCGAGCAGACCTTCAGAAACCGTGAAGAAAAGTAGTTAA---------TACCTTCTCAC----CTTCCCAACAAAGTT---TCTATTCTT-------------CAGACCAGTCCACCTCCACCTCCTGGACCTTCTTATCAACAAGAGCGTCGGACTCGTCGACATGGACATCTCCAAAAACATTACTGTGGACtttgaaaagtgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   163920 234 -  1794024 TTCAGATCACCAAGAGTGTCCCACTCATCGATTACTCTGGAGAATGCCACTTCGAGCAAACTTTTAGAAACAGAGAGGAGAAGTG---AG---------CACCTACTCAT----TCATCTACAGTAGTC---TTCATTCTTACCG----TATTACAGACCAGTCCAACTTCACCTTTTGGACCTTCTCATTAACAAAAGCGTTGGACTTGTTGATATGGATATCTCCAAGAACATCACTGTCGATTTCGAAAAGTAA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    198600 230 +   484378 TTTAGATTACCAAGAGTGTTCCACTCATCGATTACTCCGGAGAGtgtcattttgaacaaaCATTCAGAAACAGAGATGAAAAGTA---GG---------CATTAACATAGAAACTTgttaaaaatcaagaa-tttaCTC---------------CAGGCCagttcatcttcatcttttggATCTCCTTATCAACAAGAGCGTCGGACTCGTCGACATGGACATCTCCAAGAACATCACTGTTGATTTTGAGAAGTAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3318815 231 -  4147112 TCTAGATCACCAAGAGTGTTCCACTCATCGACTATTCCGGAGAATGCCACTTTGagcaaactttcagaaacagagaggaaaagta---agttt-----tcattACATTAG----TCTTCTAAACTCATCAGTTTTGTTT---------------CAGACCagttcatcttcatcttttgGACATTCTTATCAACAAAAGCGTCGGACTTGTTGACATGGACATTTCTAAGAATATCACTGTTGACTTCGAGAAGTAAg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446221 248 +   720316 TTCAGGTCACCAAAAGCGTCCCACTCATCGATTACTCTGGTGAAACGCATTTTGAGCAGACTTTTGCAAACAGGGATGAGAAGTA---AGGATATgaataaatttcaaat----ttgataaaaaatata---tGTGCTTTCATTAAACTTATTAAAGACCAGCTCACCTCCACCTCCTCGATATACTTATCAACAACAGCGTCGGACTTGTGGACATGGATGTTTCAAAGAACATAACCGTCGACCTTGAAGAGTAAG
i caeJap4.Scaffold18213 C 0 I 29

a score=233.000000
s ce10.chrX              2609042 2 + 17718866 AC
s cb4.chrX              17354374 2 - 21540570 aa
i cb4.chrX              C 0 I 31
s caeSp111.Scaffold582    198830 2 +   484378 AT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3319046 2 -  4147112 ac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   446469 29 +   720316 I
e caeRem4.Crem_Contig15   164154 0 -  1794024 C

a score=-2508.000000
s ce10.chrX              2609044 28 + 17718866 TTATTTGTTCTGCACAGACTTCACAACT
s caeRem4.Crem_Contig15   164154 19 -  1794024 ---------CAACTCAGATTTCGAAGAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    198832 14 +   484378 ------------CCTGAA--TAGAATAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3319048 16 -  4147112 ------------caaaaaatcataaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   446469 29 +   720316 I
e cb4.chrX              17354376 31 - 21540570 I

a score=-2237.000000
s ce10.chrX              2609072 9 + 17718866 ATCTGAACA---
s caeRem4.Crem_Contig15   164173 9 -  1794024 ATCATCTAA---
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    198846 9 +   484378 ATTCATAAA---
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0       3319064 9 -  4147112 gtCATTAAA---
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18213   446498 9 +   720316 ---AACTAAGTT
i caeJap4.Scaffold18213 I 29 C 0
e cb4.chrX              17354376 31 - 21540570 I

a score=97171.000000
s ce10.chrX              2609081 95 + 17718866 --TTTTCCAGGTACTCGAACTTTGCATCCTGGAGAGACACTGTCGGATTTGTCGTCGGAGATAAAAATCTTTTCGAGCGCATCACTGTCAACAGGTA
s cb4.chrX              17354407 95 - 21540570 --TTCTTCAGATACTCAAACTTTGCCTCGTGGAGAGATACCGTCGGATTTGTTGTTGGCGATAAGCATCTTTTCGAGCGCATCACTGTCAACAGGTG
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig15   164190 95 -  1794024 --TGATTCAGGTACTCGAACTTTGCTTCCTGGAGAGATACCGTCGGTTTCGTCGTTGGAGATAAACATCTTTTTGAGCGCATCACCGTCAACAGGTG
i caeRem4.Crem_Contig15 I 8 I 41
s caeSp111.Scaffold582    198864 93 +   484378 ----TTTCAGACACTCAAACTACGCGTCGTGGAGAGATACCGTCGGATTTGTTGTTGCAGATAAGCATCTTTTTGAGCGCATCACAGTCAACAGGTG
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3319082 93 -  4147112 ----GTTTAGGTACTCAAACTTTGCTTCTTGGAGAGATACCGTCGGTTTCGTCGTTGGAGATAAGCATCTTTTCGAGCGCATCACCGTCAACAGGta
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18213   446507 97 +   720316 TTTCCTTCAGAAACTCAAACCTGGCATCTTGGAGAGATACCGTTGGATTTGTCGTTGGAGACAAACTTATTTTCGAGCGCATCACTGTCAACAGGTA
i caeJap4.Scaffold18213 C 0 C 0

a score=155.000000
s ce10.chrX              2609176 2 + 17718866 Ct
s cb4.chrX              17354502 2 - 21540570 cc
i cb4.chrX              C 0 I 33
s caePb3.Scfld02_0       3319175 2 -  4147112 tc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446604 1 +   720316 -C
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    198957 0 +   484378 C
e caeRem4.Crem_Contig15   164285 41 -  1794024 I

a score=-6477.000000
s ce10.chrX              2609178 44 + 17718866 taaaatttatatatatatatatatattaaaaCTTGAACT----TCAAA
s caeSp111.Scaffold582    198957 36 +   484378 -------TCTGTCTTC-----TTTGATCCAactttcatttgtttcctt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3319177 45 -  4147112 ttgtttttctgttttc-cctttttgttcagattttcatc--gcacttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446605 23 +   720316 ---------------------CATATCACAAGCTTAACT--CCTCA--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17354504 33 - 21540570 I
e caeRem4.Crem_Contig15   164285 41 -  1794024 I

a score=206382.000000
s ce10.chrX              2609222 321 + 17718866 ----------TTTAAGATTTGAACTTCTCTCGTTCGCATCAGACAACTCTGATGTCACCGTGGAAGACGTGAACGTTGAAAAGCTGGGCCAAGTTCTCGACTATGATTCGGAAATTTCTATTTACGATAGAGAAGAGTTCCTCACCGCACTTCTCAAAACTGGAGGAGTGAGTTCAGCAGAG-----ATTTTAGAGAA--------------ATATGT---------------ACCATCATTATACAGGTATCAGCCAAAATTGCCAAGGAGAATGGACAGGTAACTGGGTACATTGTGAATACCAATGATAACATTCTACAGTGCTACGGAGAAAATGAAAAAACCCAAAAGTGAGACAACTTT
s cb4.chrX              17354537 328 - 21540570 ----------ttttAGATTCGAGCTTCTCTCATTCGCCACTGACAACGCCGAAGTTGTTGTTGAGGATGTCAACCCCGAGAAAATCGCCGATGTTTTGGATTACGATGCTGAAGTGTCCATCTATAACAGAGAAGACTTTTTGGCCGCTCTTCTCAAGACCGGAGGGGTGAGTT-------------CTATCATAACC--------TGTTTTTGAGAGCCTTGCGCAAAATTCATA-----TTTCCAGGTCTCCGCTAAAGTTGCCAAGGAGAATGGACAAATCACTGGATACATCGTCAACACTAAGGATAACATTCTTCAGTGCTATGGAGAAAATGAGAACGCTCACAAGTAAGA-GAGTCg
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig15   164326 325 -  1794024 ----------TTTTAGATTCGAACTTCTTTCTTTCGCATCAGATAACACCGATGTGACCGTCGAGGACGtgaatgttgaaaaactaACCGATGTTCTTGATTATGACGGAGAGGTGTCTATCTACGACAGAGAGGAATTCCTCACCGCTCTTCTCAAAACTGGAGGAGTATGTTTACAGTAC-----TTATCTTGATTAACAACAACGTTTTTTGGGG-------------------------TTTAGGTCTCTGCTAAAGTTGCCAAAGAAAATGGACAAGTGACTGGATATATCGTGAACACCAAGGACAATGTTCTTCAATGCTAcggagaaaacgagaaagcTCAAAAGTAGGACGATTTC
i caeRem4.Crem_Contig15 I 41 C 0
s caeSp111.Scaffold582    198993 313 +   484378 ----------ttttagattcgaacttctttctttcgcATCGGATAACACCGATGTGACTGTCGAAGAGGTTaatgttgaaaaactaaCCGATGTTCTCGATTATGATTCCGAGGTCTCTATTTACGACAGAGAGGACTTTGTAACGGCGCTTCTCAAGACTGGAGGAGTAAGATTAAAGAATggaatatttcaaaaga--------------ataagG-----------------------GTTTCAGGTGTCAGCTAAAGTTGCCAAGGAAAATGGTCAGGTTATCGGATACATCGTGAACACCAAGGACAATATTCTTCAATGTTAcggagaaaacgagaaagcTCAGAAGtgaga-----tt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3319222 316 -  4147112 ----------tttcagattcgaacTTCTCTCCTTTGCATCAGATAACAGCGATGTGACCGTTGAGGACGTGAACGTCGAAAAACTGACCGATGTTCTTGATTATGACAGCAACGTTTCGATCTACGACAGAGAAGACTTCCTTACCGCTCTTCTTAAAACCGGAGGAGTAAGACTTCAGAATACAG-ACATCAGAAAA--------------TTAATG---------------ATAA----ATTTCAGGTTTCAGCCAAAGTTGCCAAAGAGAATGGACAAGTCACTGGATATATTGTTAACACCAAGGACAACATCCTCCAATGCTacggagaaaatgagaaagctCAAAAGTAAAC-----TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446628 284 +   720316 TCTTTTTCACATTTAGATTTGAACTTCTTTCTTTGGAATCAGATAAATCAGATGTGACCGTTGAAGATGTGAACGTCGATAAATTACACGATGTTTTTGATTATGAAAACGAAGTCTCGATATTCGACAGAGAGGACTTTCTCACTGCTCTTCTTAAAACCGGCGG---------------------------------------------------------------------------------GGTTTCCGCAAAAGTTGCCAAGACTGGCGGACAAGTCACTGGATACATTGTCAACACTAACAACAATATTCTTCAGTGTTATGGAGAAAATGAGCAAACTCAAAAGTAtcacatgttt
i caeJap4.Scaffold18213 C 0 I 24

a score=-5852.000000
s ce10.chrX              2609543 26 + 17718866 CAAAACTGTATAGAGTTC-----ATTTCAAA
s cb4.chrX              17354865 18 - 21540570 a------gccttt--ttt-----ttttcgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   164651 20 -  1794024 A------GTATccaattg-----aattcaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    199306 18 +   484378 t------ttattttgt-------tcttcaac
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3319538 25 -  4147112 C------ATCTCAAATCGGGAAGtctttcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   446912 24 +   720316 I

a score=58989.000000
s ce10.chrX              2609569 108 + 17718866 CTT----------GATATTCAGAGCACTTTTCTCCTCTGCTGCTGCAAAGATGAACGCTAAAGTCACAATGTACATTCGCAAGGATGCTGGACAACCTATGGATCAATTGTCGAAGGT
s cb4.chrX              17354883 110 - 21540570 aatctaaaaccTAAAACTTCAGAGCTCTTTTCTCTGCCGCTGCCGCCAACATGAACGCCAAGGTCAACATGTACATTCGCAAGGAATCGTCTCCACTCATCGAGCAACTT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   164671 108 -  1794024 aat----------aatattcagAGCCCTTTTCTCATCTGCTGCCGCCAACATGAGCGCCAAAGTTAACATGTACGTCCGCAAGGAGTCTTCTCCACTTATCGAGCAACTCTCACAGGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    199324 111 +   484378 aat-------tttcattttcagagctcttttctcttctgctGCAGCTAACATGAACGCTAAAGTTACTATGTATATCCGCAAAGAATCCAGTCCTCTCATTGAACAGCTCTCACAGGT
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3319563 111 -  4147112 att-------attatttttcagagctttgTTCTCATCCGCTGCTGCCAATATGAACGCCAAGGTGGCTATGTATGTTCGTAAGGAGTCAGGACCACTTATGGACCAACTTTCCCAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   446936  98 +   720316 ----------tttttttttcagagctcTGTTTGCTTCCGCCGCTTCGAAAATGGATCCAAAGGTGACAATGTACGTCAGAAAAGATAGTTCACAACTCATGGATCAGC----------
i caeJap4.Scaffold18213 I 24 C 0

a score=-12455.000000
s ce10.chrX              2609677 36 + 17718866 CACCCGACTAAATTCTCTCAACCGTTTATATTTTAT
s cb4.chrX              17354993  3 - 21540570 ------------TGT---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   164779 27 -  1794024 -----AATTCTATGTTTCGA----GACCTTTATCAT
i caeRem4.Crem_Contig15 C 0 I 16
s caePb3.Scfld02_0       3319674 28 -  4147112 -------TGCTATTTTCTGAA-CGAAAATATCTGAT
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18213   447034  1 +   720316 ------------T-----------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    199435 37 +   484378 I

a score=93821.000000
s ce10.chrX              2609713 118 + 17718866 TTTTCAGACTGCTGAAAGCAGAACTCCAATTACCAGACTCAACACACGTGTCATTGTGAGCACCGTCAAGTATAACAAGGTCGCCTGTTTCAACATGGGGCTTCATTTATTCT-AATTT
s cb4.chrX              17354996 114 - 21540570 ----CAGACCACTGAAAGTCGTGTCCCCATCACTAGACTCAACACTCGCGTCATCGTCAACACTGTCAAATACGGCAAAGTCGCTTGCCTCAACATGGGACTTCATCTTTTCTAAAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   164822 117 -  1794024 ATTACAGGCTGCGGAGACCAAAATTCCAATTACTAGACTCAACACTCGTGTCATTATCAACACTGTCAAGTTCAGCAAGGTTGCTTGCCTCAACATGGGGCTCCATCTTTTCT-AATC-
i caeRem4.Crem_Contig15 I 16 C 0
s caeSp111.Scaffold582    199472 118 +   484378 TTCTCAGAGCGCTGAAACCAAGGTTCCAATCACCAGACTCAACACTCGCGTTATCGTGAACACTGTTAAATTCGGCAAAGTCGCTTGCCTCAACATGGGACTCCATctcttct-aattt
i caeSp111.Scaffold582  I 37 C 0
s caePb3.Scfld02_0       3319714 118 -  4147112 GTTTCAGAGCGCCGAGAGCAGAGTTCCAATCACCAGACTCAACACTCGCATTATTGTGAATACAGTCAAGTTCAGCAAGGTCGCCTGCCTCAACATGGGACTTCATCTTTTCT-AATTT
i caePb3.Scfld02_0      I 12 I 2075
s caeJap4.Scaffold18213   447035 118 +   720316 TTCTGAAAATGCCGAAGAACGAGTGCCTATCACAAGACTTAACACTCGCGTGATCATCAATACAATCAAATACAATAAGATCGCCTGCTTGAATATGGGACTCCATCtttatt-aaatg
i caeJap4.Scaffold18213 C 0 C 0

a score=-2202.000000
s ce10.chrX              2609831 3 + 17718866 -TTG
s cb4.chrX              17355110 3 - 21540570 -TCG
i cb4.chrX              C 0 I 8628
s caeRem4.Crem_Contig15   164939 3 -  1794024 -TCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    199590 2 +   484378 --ca
i caeSp111.Scaffold582  C 0 I 1
s caeJap4.Scaffold18213   447153 3 +   720316 ttt-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I

a score=-1754.000000
s ce10.chrX              2609834 6 + 17718866 GGGTTC---
s caeRem4.Crem_Contig15   164942 6 -  1794024 GGATTc---
i caeRem4.Crem_Contig15 C 0 I 1512
s caeSp111.Scaffold582    199593 4 +   484378 -agtt----
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   447156 6 +   720316 ---tttttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e cb4.chrX              17355113 8628 - 21540570 I

a score=506.000000
s ce10.chrX              2609840 73 + 17718866 GACGGTTTTTCATT-----TAATTCTATTTATGTTTTTCTTATTGAATAGCCAAATGTGTTTTATATAAAG-----AATTAAT
s caeSp111.Scaffold582    199597 65 +   484378 -----ttctccATT-------ATTGTATTCACATATTTAT------ACAAACATATCAGTTATATgcaaagaaataaattaat
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   447162 61 +   720316 ---aaatatttattgtgattaattagattaatttattttc-----------caaa---attatatataata-----aactaat
i caeJap4.Scaffold18213 C 0 I 3665
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e cb4.chrX              17355113 8628 - 21540570 I
e caeRem4.Crem_Contig15   164948 1512 -  1794024 I

a score=271.000000
s ce10.chrX              2609913 7 + 17718866 AAGCACT
s caeSp111.Scaffold582    199662 7 +   484378 aaatatt
i caeSp111.Scaffold582  C 0 I 1884
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e caeJap4.Scaffold18213   447223 3665 +   720316 I
e cb4.chrX              17355113 8628 - 21540570 I
e caeRem4.Crem_Contig15   164948 1512 -  1794024 I

a score=0.000000
s ce10.chrX              2609920 761 + 17718866  
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e caeJap4.Scaffold18213   447223 3665 +   720316 I
e cb4.chrX              17355113 8628 - 21540570 I
e caeSp111.Scaffold582    199669 1884 +   484378 I
e caeRem4.Crem_Contig15   164948 1512 -  1794024 I

a score=826.000000
s ce10.chrX              2610681 145 + 17718866 atttttctaaagttgaaaaatctcaatt---tgcttcgattcaaatttggacctcgtgct----aaaaaattt--gtttgatggagcgcgat--tgcatgtttctatgtttgttttttgttatttttctagttatttttcgggtaT--TCAGTGTATT
s caeRem4.Crem_Contig15   166460 153 -  1794024 atttttctgaaacc--aaaacCAGAATTAATTGCTTTGGATCTATCTTCgaattgatgtttttgaaaacgctcccattttctgaaatattatcTTCCatctttcttccattttgcttttttatttcttcagtt---tGTCAAGTACACCCAAAGTCAT
i caeRem4.Crem_Contig15 I 1512 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e caeJap4.Scaffold18213   447223 3665 +   720316 I
e cb4.chrX              17355113 8628 - 21540570 I
e caeSp111.Scaffold582    199669 1884 +   484378 I

a score=31.000000
s ce10.chrX              2610826  8 + 17718866 --TAATTTGT
s cb4.chrX              17363741  8 - 21540570 --taattttt
i cb4.chrX              I 8628 C 0
s caeRem4.Crem_Contig15   166613 10 -  1794024 GAACActgat
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e caeJap4.Scaffold18213   447223 3665 +   720316 I
e caeSp111.Scaffold582    199669 1884 +   484378 I

a score=1500.000000
s ce10.chrX              2610834 16 + 17718866 TTATTTCAAAAAAAAA
s cb4.chrX              17363749 13 - 21540570 ttatttcttcaaa---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   166623 16 -  1794024 ttatttgaaaaaaaag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    201553 16 +   484378 TTGTGTAGAAATAAAG
i caeSp111.Scaffold582  I 1884 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I
e caeJap4.Scaffold18213   447223 3665 +   720316 I

a score=-4190.000000
s ce10.chrX              2610850 12 + 17718866 CTTGTGATTAGA--
s cb4.chrX              17363762  6 - 21540570 ----aaattc----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   166639  8 -  1794024 ac--aaattg----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    201569 10 +   484378 ATGGATATTA----
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   450888 12 +   720316 CTTCTGATTA--GA
i caeJap4.Scaffold18213 I 3665 C 0
e caePb3.Scfld02_0       3319832 2075 -  4147112 I

a score=124639.000000
s ce10.chrX              2610862 221 + 17718866 AATGTGATTT-TAAAAAAACAGGTTACATAACCGGGAAAAA-------------------TATAAATATCTCATTCTGAGACGAATGATGA-AAAAGAAAAAAAA-AGATGGGATTATAGAACGACAGGACATCTAGATGATTTGC-----AGATTGCACTAGTCGGGCTTCTGTGGTAAGCG------AACAATT-ATGT-AAATGACGTGGAAATGCTGGGAAACGAACACAAACTCTAAGGCAGTTTTTGAGC
s cb4.chrX              17363768 212 - 21540570 aatg-------aaaagaaacaggttatgaaaccgggtgaaaataaaatgaaaaa----attataaatatctcattctgaaatgaatgatag-ttgagaattcaaaaaaaagggat-----------GGGATTTCTAGA---GTTGC-----GGATTGCACTATTCGGGCGTCTGCAGTAAGCG------AAAACTTGGTATAAAATGACTTGGAAATGCTGTTGA------ACAAACCCTACGGCAG-TTTTGAGC
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig15   166647 208 -  1794024 aaTGTAATTGTAAAGGAAACAGGTTATGTAACCGGGAGCAA-------------------TATAAATATCTCATTCTGAGACGAATGACGA-GAAAGAACAGAAATATAAAGCATT--------GGGGGACATCTAGATATTTTGC-----GGATTGCACTATTCGGGCTTCTGCGTTAAGCG------AAAACTT-GTGT-AAATGGCGTGGAAATGCTGTTGA------ACAAACCCTACGGCAG-TTTTGAGC
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    201579 203 +   484378 AATGTAATGA-AAAAGTAACAGGTTAGATAACCGGGAGAAA-------------------TATAAATATCTCATTCTGAGAtgaatga----tgaagaaaatatagaGACGACAA---------GGGGGACTTCTAGGTAATTTGC-----AGATTGCACTATTCGGGCTTCTGTGTTAAGCG------AAAACTT-GTGT-AAATGACTTGGAAATGCTGCGGA------ACAAACCCTACGGCAG-TTTTGAGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3321907 201 -  4147112 AATGTGATAG-AAAAGTAACAGGttaaaaaaccggga-aaa-------------------taTAAATATCTCATTCTGAGATGAATGATGTTTGAAGAAAGTTTA-AAACGGC-------------GGGACTTCTAGGTAATTTGC-----GGATTGCACTATTCGGGCTTCTGCGGTAAGCG------AAAACTT-GTGT-AAATGACGTGGAAATGCTGCGGA------ACAAACCCTACGGCAG-TTTTGAGC
i caePb3.Scfld02_0      I 2075 C 0
s caeJap4.Scaffold18213   450900 219 +   720316 -----ATTTATAATTGAAACAGGATAAAAAACCGGGCGGagtagaaataaaaaaaaagaacataaaTATCTCATTCTGAGAAGAATGGTGG-CAATGGA-------AAAAGTG-------------GAGACGTCTAGGTAAGTTGCGAATTGAATTGCACTAAgcagggttttttttttaaagaatttaaaaattt-gtgg-tATTG--GTGGAAATGCAATGAA------ACGAGCCCTACGGCAG-TTTTGAGC
i caeJap4.Scaffold18213 C 0 C 0

a score=3843.000000
s ce10.chrX              2611083 10 + 17718866 GTATTTCTTA
s caeRem4.Crem_Contig15   166856 10 -  1794024 GGATTTCTTA
i caeRem4.Crem_Contig15 I 1 I 3
s caeSp111.Scaffold582    201782 10 +   484378 TGGTTTCTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3322108 10 -  4147112 TGGTTTCTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   451119 10 +   720316 TTATATATCA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17363980 21 - 21540570 I

a score=406225.000000
s ce10.chrX              2611093 484 + 17718866  
s cb4.chrX              17364001 513 - 21540570  
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig15   166869 528 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    201792 512 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3322118 510 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   451129 532 +   720316  
i caeJap4.Scaffold18213 C 0 I 33

a score=-1108.000000
s ce10.chrX              2611577 2 + 17718866 A-------T
s cb4.chrX              17364514 2 - 21540570 a-------t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   167397 2 -  1794024 A-------T
i caeRem4.Crem_Contig15 C 0 I 52
s caeSp111.Scaffold582    202304 9 +   484378 aaaatggtt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3322628 2 -  4147112 G-------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   451661 33 +   720316 I

a score=-1514.000000
s ce10.chrX              2611579 15 + 17718866 GTGTGATTACTAAAT
s cb4.chrX              17364516 13 - 21540570 ttttggttaaaaT--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    202313 15 +   484378 ttttaattattgaat
i caeSp111.Scaffold582  C 0 I 79
s caePb3.Scfld02_0       3322630 14 -  4147112 TATCAATTCAAAAg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   451661 33 +   720316 I
e caeRem4.Crem_Contig15   167399 52 -  1794024 I

a score=-4146.000000
s ce10.chrX              2611594 80 + 17718866 ----------------CTGATACT--------ACAAAAAATGTCACGTTTTGGGGGAAGTTAAACTGATAAGTATTTTCAAGGAAACGAATCATAATGTTTTTT
s cb4.chrX              17364529 74 - 21540570 TTCA------------TCGAATTTGCTTACTgtcaaaaac--ctaaaattgaagaaataaaGAAT-------AATTTTTATAG---------CTACCGTGATTC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3322644 75 -  4147112 ctcaaaagaagaaaagttgagatt--------tcaaaa------aaagctcaagaTGAGTTGAAT------GAACTTCGAATA---------Ctggcgtttttt
i caePb3.Scfld02_0      C 0 I 66
e caeJap4.Scaffold18213   451661 33 +   720316 I
e caeSp111.Scaffold582    202328 79 +   484378 I
e caeRem4.Crem_Contig15   167399 52 -  1794024 I

a score=-1910.000000
s ce10.chrX              2611674 303 + 17718866 GGAATAATCAA----TAATTCTACAAATTTCGGTTTCTGTG-----TATTACAA--GCACTCatttttaaatta--aattaaattattataaatttCTCCATATAAAATAAACGTGATATGAAGTTTTCCTCGTTAAGCTTAGAACTGGTTATTTCCTAACAGGTAAGTAAGTCAGAAAT--ACcacgtggtattagagtgtctcatctcggcttgatctacgctgatctgcaaaaaatacaagagttgagaggcagagttttcatctgatctcgcatggttaagaacgtgctgacgtcatattactttggacgaaaa
s cb4.chrX              17364603 231 - 21540570 CAGATCGtcaacttttagctcaat-tatctcaatttctgtgaaagatattaaagtTTTaccaactgatgaaatattgttgacattatgataaacagctC---ATCAAATGGCAAagtttcgatatctttcacattaATCGT---------------------GATAAATAAATTTAAAGTTGACT-----GTATAAGA-TGACTCAT------------------------CAAGA-----AAAAGCCTCAAcgcaattttcttttttggttt---------------------------tattgatttttatcaaaa
i cb4.chrX              C 0 I 108
e caePb3.Scfld02_0       3322719  66 -  4147112 I
e caeJap4.Scaffold18213   451661  33 +   720316 I
e caeSp111.Scaffold582    202328  79 +   484378 I
e caeRem4.Crem_Contig15   167399  52 -  1794024 I

a score=0.000000
s ce10.chrX              2611977 111 + 17718866 attGGAAACTAGAAATTTCGAGCTCAAAATAAGCCACAAAAATCACTCTTTACTGGATTTACATTTTCAGGAGACTTTGGGAATTATAATAGTATTGCAATAATTTTTAAA
e caePb3.Scfld02_0       3322719  66 -  4147112 I
e caeJap4.Scaffold18213   451661  33 +   720316 I
e cb4.chrX              17364834 108 - 21540570 I
e caeSp111.Scaffold582    202328  79 +   484378 I
e caeRem4.Crem_Contig15   167399  52 -  1794024 I

a score=-640.000000
s ce10.chrX              2612088 262 + 17718866 GTACATAATTTTTCATTGGCATAAAAATTCTCAAACTCCTCTAATACACCTAATTACTTTCACTTTTCGAAATAATGTTTTATAGTGTT-----------GTAGATAAAGTTTATAATTCTACGGAAAATTTCAAAATCTTCCAA--TTTTTTAAGTGTCACAAGAAAAGAGTATTTGTTAAATCTGCTTAAATCTTAGTTTTGTTGAATCATATTTCTATTGAGTTAAATAAAGAAGT--TCAATTCAGAGAAGGTGAATTCTCAGTGCACCATAA
s cb4.chrX              17364942 225 - 21540570 GTGAATCACtttt--ttgacaggaa-------------ctgcGATAAATCTGATCAGCGTTG--TTTGGACTTATTATTTCACAGGCTTATCTGTAATTGGTACATCAGCTTTCTATCATTATATACAATTTTGGTACCGTGAAGCCTGTTTTAGATG------------------------GTCCCCTTCAACTTTACagccattttatctcggttcttgtcaaaggtataaaaaaattgtcaactgataaaat-----------gtctacCATAA
i cb4.chrX              I 108 I 142
e caePb3.Scfld02_0       3322719  66 -  4147112 I
e caeJap4.Scaffold18213   451661  33 +   720316 I
e caeSp111.Scaffold582    202328  79 +   484378 I
e caeRem4.Crem_Contig15   167399  52 -  1794024 I

a score=0.000000
s ce10.chrX              2612350 195 + 17718866 GCTAAAAATGTACCCTGATGAATGAAAAAAGGCAGAAAAACTACTAGTAATATAATTATAAAAATACTCCATTATTTTTCCAGACAAAGACAAATGGTACTTAGAGTTGCCGACCAGGGCTGTGCGGCTGTTTTTGACCGTTTTTCAACGTATATTTGAAAAATTCTGCCTGTGAAATGAAGAAAGCTGGCAGCC
e caePb3.Scfld02_0       3322719  66 -  4147112 I
e caeJap4.Scaffold18213   451661  33 +   720316 I
e cb4.chrX              17365167 142 - 21540570 I
e caeSp111.Scaffold582    202328  79 +   484378 I
e caeRem4.Crem_Contig15   167399  52 -  1794024 I

a score=-10.000000
s ce10.chrX              2612545 63 + 17718866 GAATTT----TTCCACCAGCCGCACATCCTTGTTGCC---------GACGCATGTTTTCTCACAATTTTGTCTAAG
s cb4.chrX              17365309 72 - 21540570 aaatttcccgTTCCTCCTA-CGCATAATATCACTGCTTTTATGTTAGTCGCATCTT---TCAAAACTCTATTCTGG
i cb4.chrX              I 142 C 0
e caePb3.Scfld02_0       3322719 66 -  4147112 I
e caeJap4.Scaffold18213   451661 33 +   720316 I
e caeSp111.Scaffold582    202328 79 +   484378 I
e caeRem4.Crem_Contig15   167399 52 -  1794024 I

a score=331.000000
s ce10.chrX              2612608 3 + 17718866 TTC
s cb4.chrX              17365381 3 - 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   167451 3 -  1794024 TCT
i caeRem4.Crem_Contig15 I 52 C 0
e caePb3.Scfld02_0       3322719 66 -  4147112 I
e caeJap4.Scaffold18213   451661 33 +   720316 I
e caeSp111.Scaffold582    202328 79 +   484378 I

a score=600.000000
s ce10.chrX              2612611 1 + 17718866 C
s cb4.chrX              17365384 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   167454 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3322785 1 -  4147112 C
i caePb3.Scfld02_0      I 66 C 0
e caeJap4.Scaffold18213   451661 33 +   720316 I
e caeSp111.Scaffold582    202328 79 +   484378 I

a score=1486.000000
s ce10.chrX              2612612 3 + 17718866 AAC
s cb4.chrX              17365385 1 - 21540570 --C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   167455 3 -  1794024 AGC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3322786 3 -  4147112 AAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   451694 3 +   720316 aac
i caeJap4.Scaffold18213 I 33 C 0
e caeSp111.Scaffold582    202328 79 +   484378 I

a score=318528.000000
s ce10.chrX              2612615 541 + 17718866  
s cb4.chrX              17365386 488 - 21540570  
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   167458 534 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    202407 531 +   484378  
i caeSp111.Scaffold582  I 79 C 0
s caePb3.Scfld02_0       3322789 534 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   451697 480 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-1614.000000
s ce10.chrX              2613156 11 + 17718866 TTATATCGATG
s caeRem4.Crem_Contig15   167992  4 -  1794024 -------TATG
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    202938  3 +   484378 --------AAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3323323  3 -  4147112 --------AGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452177  7 +   720316 ----ATCTATG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17365874 22 - 21540570 I

a score=-5190.000000
s ce10.chrX              2613167 50 + 17718866 AGAGAGT-----G--GAGAGAA-----------AAAACGACGAGA--------CTGCTAGCTAGTATTTAGTGTGC
s cb4.chrX              17365896 58 - 21540570 AGAGAGT-----Gtccagagaa------------aaataaaaaaaatgg-aacttGTTGGCTACTGCTTTGAATGC
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   168002 64 -  1794024 AGAGAGTAAGTAGACGAGAGAA------------AAGCAATGAGGAGGGCGACCCGTTGGCTAGTCTTCCCAATGC
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    202941 70 +   484378 AGAGAGG-----G-CGAGAGAAGGAGTGTACGAGGAAGAGTGAGCGGGGAAACCCGTTTGTATGTCTTTCGAGTAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3323326 69 -  4147112 AGAGAGT-----A--AAGAGGAGGAGTGCGTGGAAGTGAGCGAAAGGGGCGACCTTTCACTATGTCTTCCGTATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452184 22 +   720316 ----------------ggataa------------aaataa--------------------------tttagttTAC
i caeJap4.Scaffold18213 C 0 C 0

a score=41229.000000
s ce10.chrX              2613217 147 + 17718866 GT-ATGTGAGGTACACAagcatcggtggttcagtggtagaatgctcgcctgccacgcgggcggcccgggttcgattcccggtcgatgcaA-TTCTTTTGGTATTT---------------GGATAA---------AGTTT--------------------------------------------AGTAACGTTTT-----GTAG-------------ACTA------TTACTCAAG------------AACAT
s cb4.chrX              17365954 199 - 21540570 AT-ATGTTTGGTATATAAGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGcggcccgggttcgattcccggtCGAtgcaatttcttttttgaatt--ttacgaAGCCGTAAAACATGTGATAAAAGGGTT--TCGCAACGTTAACACAATGTCT--------------------GCCAACAATTTAT---GTAT---ACAAA-----AACA------TGTTCCAGT------------ggatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   168066 197 -  1794024 ATCCCGTATGATG-ACAAGCAtcggtggttcagtggtagaatGCTCGCCTGCCACGCGGGCggcccgggttcgattcccggtcgatgcaa-ttcttttttgtttttgttattaatTCATCTTacaagtttttatttgtttggTCGCCATTTTCGTGCGAATTCCAAAA----------------GACAAAATTCGAA---ATAT-------------GACA------TATT----T------------AGCAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203011 169 +   484378 AT-CCATTGGAGAAACAAGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGcaa-ttctttttgctttt--ttcg----------gGTGG--TAAATGTAACTC--C-----------------------------------------GGCAGAAATTTAACTCATAT-------------ATCAATTTGCTGTCCATAA------------agctt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3323395 237 -  4147112 AT-CTCTAAGAGAAACAGGCatcggtggttcagtggtagaaTGCTCGCCTGCCACGCGggcggcccgggttcgattcccggtcgatgcaa-ttctttttgctttt--tttgt--------taataacTTAAAAACAGCTC--TCACAAAATTCACATAATCATTAAGAGCTATTTCTGATTTTAGACAAAAATTATACTTATCTGTTGCAGAGTTCAACcgattt--tgttcgaaaaaaagcaTTCATAGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   452206   0 +   720316 C

a score=-5051.000000
s ce10.chrX              2613364 17 + 17718866 TTAATTACCTCCATTCT
s cb4.chrX              17366153 12 - 21540570 tccagt-----catttt
i cb4.chrX              C 0 I 537
s caeRem4.Crem_Contig15   168263 17 -  1794024 TTTAGTGATACCATTgt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203180 12 +   484378 tttgaa-----tattga
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3323632 12 -  4147112 CTAGCC-----TGTTTA
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18213   452206  9 +   720316 -TTAAT-----TATC--
i caeJap4.Scaffold18213 C 0 C 0

a score=263181.000000
s ce10.chrX              2613381 278 + 17718866 AATTTTCAACCC----------------------------------------ACCTGAAGCTCATTGATATAGAGATCAAATCGTGCAACTTCTTGTTCAACTTCGTCCGATTCTGGACCATGTTCTTTCTGGGCGTTTCCAATGTTTGCATATCGAATAAGGAACATTTGTTGCTTGTAAACTTGATATTTTGAGATTCTGTTCGCAATCTCTGGGAAGATGTCTCTCAAATTATCAGTCTGATGTTGGTCATCAAGGTTTGCCCAACGCTTCTCAGGAACTTGTACAACCATGTCATAAAAGGCTCTCTGAAATTA
s cb4.chrX              17366702 277 - 21540570 aattctcattaC--------------------------------------TCACTTGCAGCTCATTGATATACAAATCGAATCTGGCAACCTCCTGCTCGACTTCATCAGATTCTGGTCCGTGCTCCTTCTGAGCATTTCCAATGTTGGCATATCGAATCAGGAACATTTGCTGCTTGTAAActtgatatttcgaaattctattGACAATTTCAGGGAACACGTCTCTCAAGTTATCAGTCTGATGTGGGTCATCAAGATTGGCCCAACGTTTTTCCGGTACTTGAACAACCATATCGTAGAAGACgcgctgaaa---
i cb4.chrX              I 537 C 0
s caeRem4.Crem_Contig15   168280 292 -  1794024 -atttttgatactttttcatt----------------------ttcaagtttaCCTGAAGCTCATTGATATAAAGATCAAATTTAGCAACTTCTTGCTCCACTTCATCAGACTCTGGTCCATGCtctttttgagcatttccGATGTTAGCATAACGAATTAGAAACATTTGTTGCTTGTAAACTTGATATTTGGAAATTCTGTTGGCAATTTCTGGGAAGATGTCTCTCAAGTTGTCAGTTTGATGTGCATCATCAAGATTTGCCCAACGTTTCTCTGGTACTTGAACAACCATATCGTAGAAAGCGCGCTGGAA---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203206 277 +   484378 -ACTTT-------------------------------------CAAAACCTAACCTGAAGTTCATTGATGTAAAGATCGAATCTAGCGACTTCTTGTTCGACTTCATCAGATTCTGGTCCATGTTCCTTTTGAGCATTTCCAATGTTGGCATACCGAATCAAGAACATTTGTTGCTTGTAAacttgatattttgaaattctgttGGCAATTTCTGGGAAAATGTCTCTCAAATTGTCTGTTTGGTGTTGATCATCGAGATTTGCCCAACGCTTCTCTGGCACTTGGACAACCATATCGTAGAAGGCACGctgaaa---
i caeSp111.Scaffold582  I 14 C 0
s caePb3.Scfld02_0       3323658 317 -  4147112 -ACTTTAATTCCCTTTTTTCGATAGAGCTGTGCTTACTTTTCCCTCAAACTTACTTGAAGCTCATTGATGTAGAGATCAAATCGTGCAACCTCCTGTTCAACTTCATCAGATTCTGGGCCATGCTCCTTCTGAGCATTTCCAATGTTGGCATATCTAATCAAGAACATTTGTTGCTTGTACacttgatattttgaaattctgttGGCGATTTCTGGGAAGATATCTCTCAAGTTGTCAGTCTGATGGACATCATCGAGATTTGCCCAACGTTTTTCGGGAACTTGGACAACCATGTCGTAGAAAGCGCGCTGAAATTG
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18213   452215 266 +   720316 ----------------------------------------------------ACCTGGAGTTCATTAATGTATAAGTCGAATCTGGCGACTTCTTGCTCAACTTCATCAGAATCTGGACCATGTTCCTTCTGCGCGTTTCCAATGTTGGCATATCGAATCAAAAACATTTGTTGCTTGTATACTTGATATTTAGAAATTCTATTCGCAATTTCTGGGAAAATATCTCTCAAATTGTCGGTCTGATGTGGATCGTCCAAGTTGGCCCAGCGTTTTTCTGGAACCTGTACCACCATATCGTAGAATGCGCgctgaaatta
i caeJap4.Scaffold18213 C 0 I 33

a score=-12081.000000
s ce10.chrX              2613659 33 + 17718866 TTCAGTGTAA----TGAAGTTA-------GA-AACATGTTTCAA-----T
s cb4.chrX              17366979 39 - 21540570 ----aattgacacggaatttta-------gaaaatgtttttagagTTGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   168572 37 -  1794024 ----AAAGGA-ACATGACTCTGTTGAAGTGAATTCGTTTTT--------C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203483 34 +   484378 --acgaatga----atAATCTAAGAAAATGATTACATGG----------C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3323975 35 -  4147112 Tcaaaagtga----tgttttcaaatgaatga-aatatAT----------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   452481 33 +   720316 I

a score=117332.000000
s ce10.chrX              2613692 119 + 17718866 TTACATGGCAATGTGCAAACCAATAACAATGAACGTCTACTCCAGCTTTTCCGGCAGTGTACCAGAGGGGTGCTTTTGCATCATCCCACCACACGTCTTCAGTATCATTTGGTCCTGAA
s cb4.chrX              17367018 118 - 21540570 GTACATGACAGTG-ACGAACCAGTAGCAGTGAACATCCACGCCAGCCTTTCCAGCGGTGTACCAAAGTGGAGCCTTGGCATCATCCCACCAAACATCTTCAGTGTCATTTGGTCCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   168609 117 -  1794024 TTACATGACAATGTGCGAACCAGTAGCAGTGAACATCAACACCAGCTTTTCCAGCAGTGTACCAGAGTGGAGCCTTGGCATCATTCCACCAAACATCGTCTGTATCATTTGGTCCTA--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203517 119 +   484378 TTACATGGCAATGGGCGAACCAGTAGCAATGAATATCAACTCCGGCTTTTCCAGCAGTATACCAAAGTGGGGCTTTCGCATCATCCCACCACACATCGTCAGTATCATTTGGCCCTGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324010 119 -  4147112 ATACATGACAATGAGCAAACCAATAACAGTGAACATCAACTCCAGCTTTACCAGCTGTGTACCAGAGTGGCGCCTTAGCATCGTCCCACCAAACCTCGTCAGTGTCATTTGGTCCtaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452514 119 +   720316 TTACATGACAATGAGCAAACCAATAGCAATGCACATCAACTCCTGCTTTTCCTGCTGTGTACCAAAGCGGGGTCTTTGCATCGTTCCACCAAACATCTTCTGTGTCGTTTGGACCTAAA
i caeJap4.Scaffold18213 I 33 C 0

a score=207.000000
s ce10.chrX              2613811 1 + 17718866 C
s cb4.chrX              17367136 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3324129 1 -  4147112 c
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452633 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    203636 0 +   484378 C
e caeRem4.Crem_Contig15   168726 0 -  1794024 C

a score=-1202.000000
s ce10.chrX              2613812 24 + 17718866 Gtttaaaattatttaaatttaaaa-
s cb4.chrX              17367137 16 - 21540570 A--------tactcaatttcaaaa-
i cb4.chrX              C 0 I 22
s caeJap4.Scaffold18213   452634  8 +   720316 -----------------TTTATAAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e caeSp111.Scaffold582    203636  0 +   484378 C
e caeRem4.Crem_Contig15   168726  0 -  1794024 C

a score=82.000000
s ce10.chrX              2613836 23 + 17718866 aaaatCAGAAtgaaaatttcaac
s caeJap4.Scaffold18213   452642  8 +   720316 ---------------ATTACAAC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e cb4.chrX              17367153 22 - 21540570 I
e caeSp111.Scaffold582    203636  0 +   484378 C
e caeRem4.Crem_Contig15   168726  0 -  1794024 C

a score=-733.000000
s ce10.chrX              2613859 66 + 17718866 ctagaggctttccgcagtgaccggttttcaaaattttcgacaatGcacgtggtgtcagaacgtccc
s caeRem4.Crem_Contig15   168726 30 -  1794024 -----------------------------AAAATTATCTGTCATGTATATCGTG------CGGCC-
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e caeJap4.Scaffold18213   452650  0 +   720316 C
e cb4.chrX              17367153 22 - 21540570 I
e caeSp111.Scaffold582    203636  0 +   484378 C

a score=-2380.000000
s ce10.chrX              2613925 29 + 17718866 atttcgggttgatctacgttgatctacta-----------
s caeRem4.Crem_Contig15   168756 10 -  1794024 -------------------taatttatta-----------
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    203636 17 +   484378 -----------------------ATACCAGATGGGTCTCC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e caeJap4.Scaffold18213   452650  0 +   720316 C
e cb4.chrX              17367153 22 - 21540570 I

a score=0.000000
s ce10.chrX              2613954 17 + 17718866 gtgacgcgggaatttag
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e caeJap4.Scaffold18213   452650  0 +   720316 C
e cb4.chrX              17367153 22 - 21540570 I
e caeSp111.Scaffold582    203653  0 +   484378 C
e caeRem4.Crem_Contig15   168766  7 -  1794024 I

a score=-268.000000
s ce10.chrX              2613971 25 + 17718866 aggcagatttctcaagtggtttcac
s caeSp111.Scaffold582    203653  6 +   484378 -------------------TCTCAC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   452650 20 +   720316 AGGCAA-----TTGAGTTGTTTTAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e cb4.chrX              17367153 22 - 21540570 I
e caeRem4.Crem_Contig15   168766  7 -  1794024 I

a score=-849.000000
s ce10.chrX              2613996 19 + 17718866 atggttaagaacgtgctga
s caeSp111.Scaffold582    203659  1 +   484378 A------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3324130  0 -  4147112 C
e caeJap4.Scaffold18213   452670  0 +   720316 C
e cb4.chrX              17367153 22 - 21540570 I
e caeRem4.Crem_Contig15   168766  7 -  1794024 I

a score=-5577.000000
s ce10.chrX              2614015 108 + 17718866 ggttacattttttgaggaaaaattcccgcattttttgtagatcaaaccgtaacgggacggtccttacatctcgtTGCAATTTTGACAATTGCCGCGCGCCGCCTGAAT
s caeSp111.Scaffold582    203660  13 +   484378 -----------------------------------------------------------------------------AATCTGGACAAGT------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324130  34 -  4147112 agtttcatttttt--------------gcgtTCTT------------------------------------------ATTGTAGATGTGT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   452670   0 +   720316 C
e cb4.chrX              17367153  22 - 21540570 I
e caeRem4.Crem_Contig15   168766   7 -  1794024 I

a score=0.000000
s ce10.chrX              2614123 6 + 17718866 TCAACA
e caePb3.Scfld02_0       3324164 0 -  4147112 C
e caeJap4.Scaffold18213   452670 0 +   720316 C
e cb4.chrX              17367153 22 - 21540570 I
e caeSp111.Scaffold582    203673 0 +   484378 C
e caeRem4.Crem_Contig15   168766 7 -  1794024 I

a score=100.000000
s ce10.chrX              2614129 1 + 17718866 C
s caeJap4.Scaffold18213   452670 1 +   720316 C
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3324164 0 -  4147112 C
e cb4.chrX              17367153 22 - 21540570 I
e caeSp111.Scaffold582    203673 0 +   484378 C
e caeRem4.Crem_Contig15   168766 7 -  1794024 I

a score=129156.000000
s ce10.chrX              2614130 222 + 17718866 ACCTGTTCCTCGTTCGAAAGTGAAGTTTGTTTTGCGATCCCACATATAATCTGCGGTGAATCCATGATTTTCGGTGTAGAGTCC-TAAAACAAATTGATCATTTTC------TGTCGTTCACTTTTTAATTTTCAACTCAACGAGACATCATATATATC------TGATTGTAATTTGATGCACCTTACAACTGTTGTCTTGTCACAACATGTGTTGTACAT----TGCATATTCATAT
s cb4.chrX              17367175 155 - 21540570 ACCTGTTCCTCGTTCAAAAGTGAAGTTTGTCTTTCGATCCCACATGTAATCAGCTGTGAATCCATGGTTTTCGGTGTAGAGACCTTAAACAC------------------------------------------------------------GTTCAA----------TTGTAATTCGATGCACCTTGCG--------CTTGTCAGAACACATGTTGCAT------AGCATATTCATAT
i cb4.chrX              I 22 I 18
s caeRem4.Crem_Contig15   168773 202 -  1794024 aCCTGTTCCTCTTTCAAAAGTGAAGTTTGTTTTACGATCCCACATGTAATCAGCAGTGAACCCATGATTCTCAGTGTAGAGACC-TAAACACAc---atatttcac------aat--------------ttttcaact---cgAGACAAAGTGTTCAT----------TTGTAATTCGATGCACCTTGCAACTGTTGTCTTGTCACAACACATGTTGCACATCGAAAGCATATTCATAT
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    203673 196 +   484378 ACCTGTTCCCCtttcaaaagtgaaattcGACTTTGAATCCCACATGTAATCAGCAGTGAATCCGTGATTTTCAGTGTATAGACC-TGa---------ataaaattc------cat--------------ttttcaact---caAGACACAACGTTCAT----------TTGTAATCCGATGCACCTTGCAACTGTTGTCTTGTCAGAACACATGTTGCACATCGAAAGCATATTCATAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324164 194 -  4147112 ACCTGTTCCTCGTTCAAAAGTCAAATTTGTTTTACGGTCCCACATATAATCTGCGGTGAATCCGTGGTTCTCGGTGTAGAGACC-TGAAGAc-----ataattctc------aat--------------ttttcaac---------cattGCGTTCAT----------TTGTAATCCGATGCACCTTGCAACTGTTGTCTTGTCACAACACATGTTGTACATCGGTAGCATATTCATAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452671 220 +   720316 ACCAGTTCCGCGCTCAAATGTCAAGTTTGTTTTGCGGTCCCACATGTAATCGGCTGTGAATCCATGATTCTCAGTGTAAAGGCC-tgcaaaagaaagaaaattgattgaacgaat--------------ttttcatattg-TAAAACATGGTGTTCAACAAATCGCAATTGTAATTCGATTCGAATTGCAACTGTCGTGTTGTCACAACACGTGTTGCATCGT---GGAATATGCATAT
i caeJap4.Scaffold18213 C 0 C 0

a score=-2410.000000
s ce10.chrX              2614352 15 + 17718866 --CACAATCATCACCG-C
s caeRem4.Crem_Contig15   168975 15 -  1794024 --CCTAGATATCACTCG-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203869 14 +   484378 --CACAAATATCACCA--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324358 14 -  4147112 --CAGAAATATCACTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452891 13 +   720316 CACTCGGCTG-CAC----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17367330 18 - 21540570 I

a score=194125.000000
s ce10.chrX              2614367 347 + 17718866 -CCCGCAACCGCTGTTTTCATATATCACCGCGG-A--------------CCATGTT-CCCCGCCACCATTTATCTTAC-GAAAGACAAG--AAGACGACGGCAAGAGAAATCCCAAGAAACAAA--AGA------TACATCTTTTTGTC-CTTTTTGTTGTCTCATACGTCGACCCATTATTTTATTGCCGCA--AGAGAG-------------------------TTTGAAAAGTAAC-AAAAAACGTCTTC-AAACGGCTCGTTATCGCATGG------CCCCGGGCCTCTACGGAGCCGCCTGTTCTTCCCGCTTGGT--TTTTTTGTCGCTTTTTGAAAGATGACT-TCCCACGC--AA-----------CACGGAATGCTCGACAAACATGTGGAAAAGCGGGAAAAGTCATTAGTAAAAAT
s cb4.chrX              17367348 330 - 21540570 -CCCG-AACCGCTGTTTTCATATATCACTCAGC-TTGTCCCCCCTCTGGTCATGTT-CCC-----TCATTTATTTTACGGAAAG-------AA----GTG---------------TGCAGTCGA--AGA------TACATCTC----TC-CTCGTTTCT--------CGACGGCCCATTATTTTATTgccaca--aaaaaagaagaagaagaaacagcctcagagttttaaaaaggaac-aaaaaacgTCTTC-AAACGGCTCGTTATCGCATGGGGGCTCCT-----------TCCCGCCGCCTGTTCTA----AAAGTG--TTTTTTGTCGCTTTCTGAAAGATGACT-TCCCACGCAGAGTAGCGATGCCGC----AATGCC-----AACATGTGGA----------GAGTCATTAGCGATAAT
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig15   168990 337 -  1794024 -ACCG-AACCGCTGTTTTCATATATCACTCGAC-ATGTCTTCTTT----TCATGTT-CCC------CATTTATTTTACAAAAAGACAAGGCAA----ATGAAAAG---AGCACAACGAAGCAAA--AGA------TACATCTT----TCTCTCCTCTCTT------CCGAAGACCCATTATTTTATTGCCGCA--AGAGAAG------------------------TTctaaaagtaac-aaaaaacgTCTTC-AAACGGCTCGTTATCGCATGG------CT-----------TGAAGACGCCTGTTCCCCTCTACGACG--TTTTTTGTCGCTTTTTGAAAGATGACT-TCCCACGC--AGTGGCGACGCCGCAAGAAATGCTCGACAAACATGTGGAAAAGCGGA-GAAGTCATTAGCAATAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    203883 350 +   484378 -ACCG-AACCGCTGTTTTCATATATCACTCGACTATGTCTTCTTT----CCATGTTCCCC------CATTGATCTTAC-AAAAGACAAG--AATCC-GCGAGAAG--AAGGACAAAAGAGCAAAAGAGA------Gacatctt----tc-ttcttctctttctcttccgaCGACCCATTATTTTATTGTCGCAAGAGAGAG-------------------------TTTGAAAAGTAACaaaaaaaCGTCTTCAAAACGGCTCGTTATCGCATGC------CC-----------TGAAGACGCCTGTTCCCCTCTACGACG--TTTTTTGTCGCTTTTTGAAAGATGACT-TCCCACGC--ATTGGCGACGCCGCAAGAAATGCTCGACAAACATGTGGAAAAGCGGG-AAAGTCATTAGCAAAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324372 343 -  4147112 ---CG-AACCGCTGTTTTCATATATCACTCCGC-ATGTCTTCTTT----CCATGTT-CCC------CATTTATTTTAC-GAAAGACAAG--AA----ACACGAAG--AAGCACGAAACAGCCAA--AGA------GACatctt-tcatc-ttcttttctttctttcccgACGACCCATTATTTTATTGCCGCA--AGAGAG-------------------------TTtgaaaagtaacaaaaaaacgtCTTC-AAACGGCTCGTTATCGCATGG------CC-----------TGAAGCCGCCTGTTCCCCTCTACGACGttttttttGTCGCTTTTTGAAAGATGACT-TCCCACGC--AATAGAGATGCCGCAAGAAAAGCACGACAAACATGTGGAAAAGCGGG-AAAGTCATTAGCAAAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   452904 335 +   720316 AATCG-AACCGCTGTTTTCATATATTATTCGGC-ATGTCTTCTTT----CCATGTT-CTT------CATTTATCTTTG-CAACGAGCAA--AAGCA-ACGCAAAGCTAAGAAGAAAATAAGAAG--ATACATAcgcacatttttttgtc-tctctctcactctcttcCAACGACCTATTATTTTATTGTTGC---CGAGAG-------------------------TTAgaaaagtaacaaaaaaacgtcTTC-AAGCGACTCGTTATTGCATCG------CG-------------------CCTGTTTCTC---GCGACG--TTTTTTGTCGCTTTTTGAGAGTCGACTAGCCTACCC--A----------CGCATCATATACATTCACAACATGTGGAAAAGCGGC-AAAGTCATTAgtgaaaat
i caeJap4.Scaffold18213 C 0 I 345

a score=13221.000000
s ce10.chrX              2614714 42 + 17718866 TGAAA-------------AGAACATTGGTCCGATCTTTTACA----TAATAATGATTGA
s cb4.chrX              17367678 59 - 21540570 TTCGCAGGAAAAGATACGAGAACTATGATCTGATCTTCCAAATGACAAATGATGCTGAG
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig15   169327 42 -  1794024 TTCAC-------------AGAACTATGATCTgatctttcaga----aaataatggCAGA
i caeRem4.Crem_Contig15 C 0 I 49
s caeSp111.Scaffold582    204233 42 +   484378 CTCGC-------------AGAACTATGATCTGATCTTCGGAA----GAGTAATGTTGAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3324715 41 -  4147112 CTCAC-------------AGAACTATGATCTGATGTTTGGAA----GAATAATGATGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I

a score=98.000000
s ce10.chrX              2614756 7 + 17718866 TTCATGA
s cb4.chrX              17367756 7 - 21540570 GTCGGGG
i cb4.chrX              I 19 C 0
s caeSp111.Scaffold582    204275 7 +   484378 AACATGA
i caeSp111.Scaffold582  C 0 I 221
e caePb3.Scfld02_0       3324756 0 -  4147112 C
e caeJap4.Scaffold18213   453239 345 +   720316 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-1621.000000
s ce10.chrX              2614763 46 + 17718866 ------GAAAGTGTGGATAAACAATGGT-TCGAACT---CCCCAA-----------AAAAAATTATT
s cb4.chrX              17367763 66 - 21540570 AAAAGTGATAGGATTTATAAATGACTGG-GTGTATGTAGTCCCAAGTTGCTAAGTCAGCAAATTATT
i cb4.chrX              C 0 I 23
s caePb3.Scfld02_0       3324756 48 -  4147112 ------GATATGTTGAGAACATGATCAATTTGTATCTTATgtcaa-----------agaaaatta--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-161.000000
s ce10.chrX              2614809 26 + 17718866 TTCTATAAGAGTTGTGCTCAACAATG
s caePb3.Scfld02_0       3324804 14 -  4147112 ------aaaaa------tcagcTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e cb4.chrX              17367829 23 - 21540570 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-1846.000000
s ce10.chrX              2614835 37 + 17718866 ------AGCATGAAACCTTAAAATGCACAAAAAATATGATTTT-
s cb4.chrX              17367852 36 - 21540570 ------AGTATCTGCCcatgagatatac-aaaaatgtatctTT-
i cb4.chrX              I 23 I 116
s caePb3.Scfld02_0       3324818 36 -  4147112 AGTCATAATGTC-------GAAGGTTTC-AAAAGAGTCGCtact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-448.000000
s ce10.chrX              2614872 78 + 17718866 TTAAAAATCAATAATTATTGGCAAATAGATGCAACTGTAGTATTGTTTGAA--------------ATCATACT-CATCCAAGAAAtagagacc
s caePb3.Scfld02_0       3324854 80 -  4147112 tgaaaact---------tttgaaaacagtt----ttttaggTCTGTGTGAATCTACTATCTCACTATTGTACTATATTAAGTACTTTGAGATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e cb4.chrX              17367888 116 - 21540570 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-11805.000000
s ce10.chrX              2614950 175 + 17718866 caagatgtgctcaaata---aacgaattt-------tgtggtg------------------------------------aatcttctc-------------------------agaaattgtttaaaaatgtttaaa------attttggaaaaaagtaagccattttttag----ctgaattctccaatttagtggtaag-gtacttttga------------------------agccgccagggtgaccaattttttttttcaatttttggtcccgta
s cb4.chrX              17368004 276 - 21540570 caaaattttctgaaatatcctatattttcagctatttgccgatttctggaagacatCTGTTTTCACGTTTTTGGCACAAAAATTGGTGatatcggcaaatagctgaaccaactagaaattttcaataattctgtGAATACAATGTTTTTGATCTAAGC---CTATTTTACAAcatcctgaattttcaaagtgatccaaAAGTGGACGTTCGAGCCCCAGACTCCTGAAATGGTCaaagtcaactgaaaaac--acttttttatataTCTTGTGGACCGGTA
i cb4.chrX              I 116 I 137
s caePb3.Scfld02_0       3324934 104 -  4147112 CAAGAT------GAATA---TATAATTTC-------CCCCGAC------------------------------------AAATTCCTCAATTCGTCAATCA------------AGAAAACTTAGAAACTTGTTTGAA----------------AGAAC---TTATTttaaaa----------------------------------gtttga--------------------------------------------tttttataG----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369  49 -  1794024 I

a score=-623.000000
s ce10.chrX              2615125 75 + 17718866 tatgccttatatgtaactgaatcaacaaaataacgttagataaattaccgaaatatgcacaaataaaataccaaa
s caePb3.Scfld02_0       3325038 44 -  4147112 AATACCGAATGTGTGA----------AAAATACCAAT----------CCGGAA-----------GGAAAGCTAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e cb4.chrX              17368280 137 - 21540570 I
e caeSp111.Scaffold582    204282 221 +   484378 I
e caeRem4.Crem_Contig15   169369 49 -  1794024 I

a score=-2798.000000
s ce10.chrX              2615200 51 + 17718866 ataggagattttcgctattgttagcttttttttaaattttgaacctcaata-----------------
s caeRem4.Crem_Contig15   169418 49 -  1794024 ATGGGAGATTTTCAATTATG-------------------TGAACCTCATGATATTGGGTTTTCTGATA
i caeRem4.Crem_Contig15 I 49 I 2
s caePb3.Scfld02_0       3325082 25 -  4147112 AACGAAGCTTTTCGAAT----------------------------TCACGGTC---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e cb4.chrX              17368280 137 - 21540570 I
e caeSp111.Scaffold582    204282 221 +   484378 I

a score=-18933.000000
s ce10.chrX              2615251 162 + 17718866 aaaaatgttggaaacattttt-gaaaagtttcattaca----aaaattat-----------ttatttgcaaacattttcgggtttagaggttTTCCTACTTTAAGTCTTGGAATCCGGAACAAACTGTAATTATATTCAAATTTTTGAGACAAAAAAATTTAAA--ATAGTTGGAAA--------AAA--
s cb4.chrX              17368417 158 - 21540570 aaaatcgtttgaaaaatgcttaagaaagcttcaaaaca----agctCAAGTACGACCCGGTTTGTTTATA-------TTGATTTTGGAAGTTTGG-----GATAATTTCAGAG-CTTGGAGCAACTTTGAGTA-TTTTAGACTCTAATTATCCC------------ATAATTGTCTACCCTCCAttaa--
i cb4.chrX              I 137 C 0
s caeRem4.Crem_Contig15   169469 155 -  1794024 CCTACCATTTTACAAACGttt--------ctcaaaacatttcagcATTATTGCG-------TTATTTGC--------TGGAATTTGCAGACTGGC-----AAGAAATTTCTAA-CGAGAGTAAATTTTGACTG-ATAAAGTTCTTTGATATAACATGAAACTTGATATAATTGTTAA---TGCATAGA--
i caeRem4.Crem_Contig15 I 2 C 0
s caePb3.Scfld02_0       3325107 117 -  4147112 AAAGGCAATGTACATGTGCTT--------CTCACAAAATCTCAA--------------GGTTCATGTAC---------------------------------AAATTTTC-------------ACCCTAACTG--CAGAAACCATCGCTGTAGCATGACTCGA---AAAGTGGaacacctttgaaaaata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I
e caeSp111.Scaffold582    204282 221 +   484378 I

a score=-5469.000000
s ce10.chrX              2615413 23 + 17718866 TTTGAAAAA-----AAAACTGTTTTCTC
s cb4.chrX              17368575 16 - 21540570 ccagaaaaa-----aaatcat-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   169624 16 -  1794024 CTGTGCTTA-----TCAACTG-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    204503 20 +   484378 tttgaaagaatgc-AAAACTG-------
i caeSp111.Scaffold582  I 221 C 0
s caePb3.Scfld02_0       3325224 11 -  4147112 ----------cgCGAAAACAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   453239 345 +   720316 I

a score=99195.000000
s ce10.chrX              2615436 103 + 17718866 ACCAGTTGATAAACTCATCCATTGTGGCCAAGTATGAGTTGGAAACGAAGGTGTTACGTAGTCAACCTGGACTCCGTTTGTGGCAAGGTGACGAATACCT---AAA
s cb4.chrX              17368591 103 - 21540570 accaGTAGACAAACTCATCCACTGAGGCCATGTATGTGTTGGAAACGATGGTGTCACATAGTCAACCTGAACACCGTTTGCGGCGAGGTGTCGGATTCCT---GAA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   169640 103 -  1794024 ACCTGTCGATAAACTCATCCATTGTGGCCATGTATGTGTCGGAAATGAAGGTGTCACGTAATCTACTTGCACTCCGTGCGTGGCAAGGTGTCGGATTCCT---GAA
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    204523 103 +   484378 ACCGGTTGACAAACTCATCCATTGTGGCCAGGTATGGGTTGGGAATGACGGCGTCACGTAATCAACCTGAACTCCGTTAGTGGCAAGATGACGAATTCCT---AAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3325235 106 -  4147112 ACCAGTTGAGAGACTCATCCATTGTGGCCAAGTGTGAGTTGGGAAAGACGGCGTCACGTAATCTACCTGTACTCCATTGGTTGCAAGATGACGGataccttcaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   453584 103 +   720316 ACCAGTGGCTAAACTCATCCATTGAGGCCAAGTATGAGTTGGGAAAGATGGTGTCACGTAATCTACTTGAATGCCATTTGTGGCAAGATGTCGGATTCCT---AGA
i caeJap4.Scaffold18213 I 345 C 0

a score=-10885.000000
s ce10.chrX              2615539 33 + 17718866 CTACATATAATTGTCATCCGAATATCACCGGTG---------------------------
s caeRem4.Crem_Contig15   169746 26 -  1794024 -------TTATTCATATTggaaaacaactcaaa---------------------------
i caeRem4.Crem_Contig15 I 3 I 10
s caeSp111.Scaffold582    204626 31 +   484378 --TATTATgccattttctcaattctgaACCAAT---------------------------
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3325341 31 -  4147112 --aacaatgttccaccccaaaaaattacCGAAA---------------------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   453687 58 +   720316 --ATGTTAAacaattattagaaaaaaaattgaacgttAATTATTGTATTGAACAGTTAGA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17368694 33 - 21540570 I

a score=160258.000000
s ce10.chrX              2615572 259 + 17718866 TCCATACCAAAAGTAGCATCTGGTTTTGTGTTGTTCAAGAGAGTTGCTCCGTAACCATCGGCCAGAATGACAATTAGGTTTTGTCCAATTGGATCGCG------AGCAGCTGATCCCAATACCAACCCAAGTAGAATCAACACTAGATTCATCTGGAAATGAGCAGATAAATGGTAA--------CAA--ATCAGAAGAAAACGTCTG---AAATGTTGGAAAACAAAAA---------------CAAAAAGAAGAAG--GGAACACATAAGATTTGAAA-AGAGATAGATGATGG
s cb4.chrX              17368727 288 - 21540570 tcCATACCGAAAGACGCATTTGGCTTGGTATTATTCAGAAGCGTTGCACCGTAACCATCAGCAAGAATGACGATGAGATTCTGTCCAATTGGATCCCGAACGACGGCGGCGACACCGACAACCAGTCCAAGGAGGACTAGCATCAGATTCATCTGGAATTGAGCAATTAT-TGGTGaaaaagagccca--ctcaacaaaaataacaca-----atgttggaaaacaaaaacaaaagacaagacaaaaaaaaaacgaatggGGAACACAAAAGATGTAAAAGATAGATATATGATGG
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig15   169782 255 -  1794024 tcCCTACCGAAAGTTGCATCCTGCTTGGTATTATTCAATAGTGTTGCTCCATATCCATCAGCAAGAATGACGATGAGATTCTGTCCAATTGGATCGCG------TGCGGCGGCTCCAGAAACCAGTCCGAGTAGGACTAGTAGCagatccatctgaaaatgaacagcCAT---------------CTT--ATTGTCAGACAACACTCg-----atgttgaaaaacaaaaa-----------aaaagaaaaaaaagaat--ggaacACAAAAGATGTAAAAAAGAGATATATGATGG
i caeRem4.Crem_Contig15 I 10 C 0
s caeSp111.Scaffold582    204658 236 +   484378 TA-ATACCAAAAGTGGCATCTGGTTTTGTATTATTTAATAATGTGGCTCCATATCCATCAGCAAGAATGACGATGAGATTCTGTCCAATCGGCTCACG------AGCAACAACTCCGAACACCAGTCCAAGGAGGACCAGTACCAGATTCATCTAAAA-------ACAAT---------------CT--------CATACAATGAATG-----gagttgaaaaacaaaaa---------------caaaaagaagaat--ggaacacaaaagatgtgaaa-agaGATAGATAATGG
i caeSp111.Scaffold582  I 1 I 7
s caePb3.Scfld02_0       3325373 243 -  4147112 TACATACCAAAAGTAGCATCTGGTTTTGTGTTGTTTAACAGTGTGGCTCCATAACCGTCGGCAAGAATGACAATGAGATTCTGTCCAATCGGTTCGCG------AGCAACAGCTCCGAAAACTAGTCCGAGTAGGACTAGCACcagattcatctgaaaatgaacgaCTAA---------------CT--------TAGACAACACTTG-----ctgttgaaaaacaaaaa---------------caaaaagaagaat--ggaacacaaaagatgtaaaa-agaGATAGATGATT-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   453745 251 +   720316 TCCTTACCAAACGTGGCATCTGGTTTCGTCTTGTTAAGAAGAGTGGCTCCATAACCATCAGCCAAAATGACGATAAGATTCTGTCCGATCGGATCGCG------AGCCACAATTCCGGATACTAGTCCGACGAGGACTAGTATGAGATTCATCTAAAA-TAAAAGTTTGT---------------CGAAGACAATCAGACAACACTCCAGGAAtcgtagaaaaacaaaaa---------------caaa-----gcaT--GGAACATGAACGATGGGAGA-TGGGATGGATATCTG
i caeJap4.Scaffold18213 C 0 C 0

a score=-8254.000000
s ce10.chrX              2615831 17 + 17718866 GGGA-------GTT----GGGACAAGAT
s cb4.chrX              17369015 19 - 21540570 --GAGAGGTCCCCTAGGCGGG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170037  8 -  1794024 --GA-------CCT----GGG-------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3325616  9 -  4147112 -GGA-------CCT----TGG-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   453996  1 +   720316 -------------T--------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    204894  7 +   484378 I

a score=40760.000000
s ce10.chrX              2615848 136 + 17718866 AAAGTTATACGCCAGAGTTCAAAAAATATATGACGATTTGAGC--AA-----------ATGGGAAGGA--------TT-------------GTTTTTTA------AAGGTT-------CCTAGAAAG--AAATAGACACACATGGAAAGCGGAAGAAGAAAGAAA-GGGTTCTATTCTCCATGAAT
s cb4.chrX              17369034 160 - 21540570 -AAGATACACGCCAGAGTTCAAGCGG-ATATGACGATTTCAGGAAGATCTAGTGAagcatgagaaaaaaat-----tctgggcGAAG--GAGACTTTTT------GGGTTCCAACAGgttgagaaaa--gaagaaa---aaacagaagactT-----GAATGCTT-GTTTTCGACTTTCTATGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170045 156 -  1794024 -AAGATATACGCCAGAGTTCAAACGG-ATATGACGATTTGAGG--GGTTCACTGAAGCATGGGAGAAA--------TCCGATGGAAGCTTAGATTTTTT------GGGTTCT------ctgaggaga--aaaaaaa---agaaaaaagacatacAACAAGAGCAA-GCGTTCtattttccatgaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    204901 150 +   484378 AAAGATATACGCCAGAGTTCAAACGG-ATATGACGATT-------GGCTCAATGGAGCAT-GTGAAAA--------TCCAATGGAAGCTGAGATTTTTT------AAGTTg-------ccgaaaaga--aaacagg---agA-AAGCGACAGACAAGGAATGCTTCgtgttctcttttccatgaat
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3325625 149 -  4147112 -AAGATATACGCCAGAGTTCAAGCGG-ATATGACGATTTGAGA--GGCTCGGTGAAGCATGGGGAGAA--------TTCGATGGAGGAAAAGA-TTTTT------AGGTTC-------CCGAAAACGCTCAAC----------AAATAACAGACAGAAAAAGCTt-atgttcttttcttcatgaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   453997 158 +   720316 GAAGATACACGCCAGAGTTCAAGCGG-ATATGATA--TGACGT--AGCTCATTCTAACATGTGAAAAGGTTCTttgtttcaagaaaaataagaatttttcCTAACGAGTTt-------tccaacaca--aaaaaaa--------gaaagaagataacaaaaatat-a-----gatttCCCATGAAT
i caeJap4.Scaffold18213 C 0 I 146

a score=2408.000000
s ce10.chrX              2615984 20 + 17718866 TTTTAAAAAAACATTCCG----AC
s cb4.chrX              17369194 20 - 21540570 ATTT--TAGAACACATTCCTAC--
i cb4.chrX              C 0 I 101
s caeRem4.Crem_Contig15   170201 18 -  1794024 tttt--taaaacattccgtt----
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    205051 16 +   484378 tttt--taaaacattccg------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3325774 16 -  4147112 tttt--taaaacattccg------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   454155 146 +   720316 I

a score=-963.000000
s ce10.chrX              2616004 24 + 17718866 TCTCGAACGATTTTTTCTTGTTTT---
s caeRem4.Crem_Contig15   170220 17 -  1794024 ----------tctctttttcttctttt
i caeRem4.Crem_Contig15 I 1 I 100
s caeSp111.Scaffold582    205067 15 +   484378 ---------ttgtcttctttctct---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3325790 14 -  4147112 ---------ttgt-tgctttttct---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   454155 146 +   720316 I
e cb4.chrX              17369214 101 - 21540570 I

a score=42.000000
s ce10.chrX              2616028  7 + 17718866 TTTCTGT---
s caeSp111.Scaffold582    205082 10 +   484378 ttttttctat
i caeSp111.Scaffold582  C 0 I 31
s caePb3.Scfld02_0       3325804  7 -  4147112 tttttgt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   454155 146 +   720316 I
e cb4.chrX              17369214 101 - 21540570 I
e caeRem4.Crem_Contig15   170237 100 -  1794024 I

a score=128.000000
s ce10.chrX              2616035 5 + 17718866 TGCTT
s caePb3.Scfld02_0       3325811 5 -  4147112 ttttt
i caePb3.Scfld02_0      C 0 I 127
e caeJap4.Scaffold18213   454155 146 +   720316 I
e cb4.chrX              17369214 101 - 21540570 I
e caeSp111.Scaffold582    205092 31 +   484378 I
e caeRem4.Crem_Contig15   170237 100 -  1794024 I

a score=0.000000
s ce10.chrX              2616040 507 + 17718866 AATTTgactagaggttctcgttattttgaacgtatctgcctaaaatgtgctcaaataaacaaatttcgtaatgaaaatgttcaaaaaattttgaaagattttatggcggttcaaaatttagctagctaaaatttccaagtttaaccacttttccgtgtctcagcagtcccaagttaacttttttttaaattgtaattttttgcatattttgatcgtttatcatacgttattttgttaattggggcacatttgccgataggtgaccaaattggcattaattagtaacctgtcagcttcaagtgcactttaatcaactgaaaaatatcagaaaaaaacaacaaactataccaaaaaattgataattcaaaaaaaaagtcaaccgctgtataacggaaaaataacaagaattggagattttagctaaatttagctttttttaaaaggaatttcgagccaaatttaggaaaatttttgaagcagcttcattacgaactgtgtttatttgaa
e caePb3.Scfld02_0       3325816 127 -  4147112 I
e caeJap4.Scaffold18213   454155 146 +   720316 I
e cb4.chrX              17369214 101 - 21540570 I
e caeSp111.Scaffold582    205092  31 +   484378 I
e caeRem4.Crem_Contig15   170237 100 -  1794024 I

a score=270.000000
s ce10.chrX              2616547 90 + 17718866 cacattttgggcatatacgtttaaaataccatacccaacagggttagtcctTAATGGCTTTAAGTAACATTTTGGGGCATCCTGAAAACC
s caeSp111.Scaffold582    205123 66 +   484378 cagGTTTTGAACTTATAGATATCTGAAGCCAATTCCAACA----TGGTACTGAATGGc-------aac-----------ttctaaaaa--
i caeSp111.Scaffold582  I 31 C 0
e caePb3.Scfld02_0       3325816 127 -  4147112 I
e caeJap4.Scaffold18213   454155 146 +   720316 I
e cb4.chrX              17369214 101 - 21540570 I
e caeRem4.Crem_Contig15   170237 100 -  1794024 I

a score=238.000000
s ce10.chrX              2616637 5 + 17718866 ATGAC
s cb4.chrX              17369315 5 - 21540570 atgaa
i cb4.chrX              I 101 C 0
s caeSp111.Scaffold582    205189 2 +   484378 ---aa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3325816 127 -  4147112 I
e caeJap4.Scaffold18213   454155 146 +   720316 I
e caeRem4.Crem_Contig15   170237 100 -  1794024 I

a score=1243.000000
s ce10.chrX              2616642 7 + 17718866 ATTATCT
s cb4.chrX              17369320 7 - 21540570 atctggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170337 7 -  1794024 atCAGAT
i caeRem4.Crem_Contig15 I 100 C 0
s caeSp111.Scaffold582    205191 7 +   484378 attagat
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3325816 127 -  4147112 I
e caeJap4.Scaffold18213   454155 146 +   720316 I

a score=7291.000000
s ce10.chrX              2616649 31 + 17718866 GGAAAATATGTGGTAATGGCAGTTGAAAAAA
s cb4.chrX              17369327 29 - 21540570 cggaaaaatgtgtcaatcctggtg--gaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170344 27 -  1794024 GGG--AAATGTGTCAGTCCCtggt--aaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    205198 27 +   484378 -ggAAAAATGTGTCAATTTCagtg---gaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3325943 27 -  4147112 --GGAAAATGTGTCAATCCcaacg--aaaaa
i caePb3.Scfld02_0      I 127 C 0
e caeJap4.Scaffold18213   454155 146 +   720316 I

a score=154554.000000
s ce10.chrX              2616680 200 + 17718866 TTTGACATTAAGTGTCAATGGCAAATTC------------------------GAAGACGACGATTGTCTGCCC----GCGTGT---GCAACGGATGACTG---AGTGTAAAAAGCAAACGCAAGTACGACGATGagaagcagcag-gagatggaaaag--------aagaagaagaagatcaaaacgaaaaaCGACTTGGTGAGCTGC---------------------CGATTCGCATGAG--GAGTAATCAATTGAGAT---TTCCG
s cb4.chrX              17369356 246 - 21540570 tttgaaattaagtGTCAATGGCAAATTCGACAGATAGAGACAACGAGAGATAGAG---AAAGATCGTCTGC-------CGGTGTGAAAAAC-GATGACTG---AGTGTAAAAAGCAAAAGCAAGT---ACGATGAGAAGCAGCAGTGAAGAAGTATGg---gtgaagaagaaaagaagatcaAAGCGAAAAACGACTCGGTGAGATGAGGAAGGTCTCAGGAGCGGATGGGATTCGCATGAGGAGAGTAATCAATCGAGAC---TCTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170371 187 -  1794024 tttgaaattaagtGTCAATGgcaaattc------------------------gaa---aaagattGTCTGC-------CGCTT---GCAAC-GATGACTG---AGTGTAAAAAGC-AAGGCAAGT---ACGATGAGAAGCAGCAG-GAGAAGGGAAGG---AAAAAGACAGAAAGAAgatcaaaacgaaaaacgacTCGGTGAGCTGC---------------------CGATTCGCATGAG--GAGTAATCAATCGAG----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    205225 196 +   484378 tttgaaattaagtGTCAATGGCAAATTC------------------------GAA---AGAGATTGTCTGA-------CGCGT---GCAAC-GATGACTG---AGTGTAAAAAGC-AGAGCAAGT---ACGATGAGAAGCAGCAG-GAGAAGGGGAGGAAAgacaagaaagaaagaagatcaaaacgaaaaacgacTCGGTGAGCTGC---------------------CGATTCGCATGAG--AAGTAATCAATCGAAGA---CTCC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3325970 191 -  4147112 tttgaaattaagtGTCAATGGCAAATTC------------------------GAA---AGAGATTGTCTGC-------CGCGT---GCAAG-GATGACTG---AGTGTAAAAAGC-AAGGCAAGT---ACGATGAGAAGCAGCAG-GAGAAGGGAAGg-----caagaaagaaagaagatcaaaacgaaaaacgacTCGGTGAGCTGC---------------------CGATTCGCATGAG--GAGTAATCAATCGAGAC---TCAC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   454301 193 +   720316 TCCGAAATTAAGTGTCAATGGCAAATTC------------------------GAA---AGAGATCGTCTGTCCGGCAGCGTGT---GCGA--GATGTCTGAGAAGTGTAAAAAGCAATGGCAAGG---ACGACGAAAAGCAGGAG-GAAAGCATAAAG-----------------AAGATCAAAACGAAAAACGACTCGATGAGCTGT---------------------CGATTCGCATGAG--GAGTAATCAATCGAGGCGTTTTCCG
i caeJap4.Scaffold18213 I 146 I 878

a score=-12320.000000
s ce10.chrX              2616880  82 + 17718866 ATAAATGAGGGTGGGACAT--------------------GA-------CGGAGGGGGGA--G------AGAACTTTTTGAG-AAATTTTAATTT------------------ATGAAATTCT-CTGATTTTTTTTGA
s cb4.chrX              17369602 103 - 21540570 C------GGAGAaggattttttcatttgtttcgTCCATTGAAAATTGGCGAGGACGAGc--gga----aaattgatttgag-aaatgattttttttt------ggtttctcacTGGGATtct---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170558  80 -  1794024 ------------AGGATTC-----TCGGTTTTCCCCACGGA-------TGAAAATGAGG--GGACATCAGATTGATTTGAGAAAACGATCATTTTC----------------ATagtgtttt---------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    205421 101 +   484378 ------------GAGAGCC---------TTTTTCCC---GA-------TGAAAATGAGG--GAAAA--CGATTGATTTGAG-AAgcgattatttttttcgaaaaataatactATGGGAACTTCATGAAAcacttttg
i caeSp111.Scaffold582  C 0 I 122
s caePb3.Scfld02_0       3326161  79 -  4147112 ------------GGG---------------TTTTCC---GA-------TGAAAATGAGGCAGACAG--CGATTGATTTGAG-AAACGATTATTT-----------------CATGGgatcgttttg-ttttctttca
i caePb3.Scfld02_0      C 0 I 336
e caeJap4.Scaffold18213   454494 878 +   720316 I

a score=0.000000
s ce10.chrX              2616962 4 + 17718866 TTTT
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e cb4.chrX              17369705 0 - 21540570 C
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170638 0 -  1794024 C

a score=-219.000000
s ce10.chrX              2616966 106 + 17718866 GAGAAGGACACAATTTTTCGGCTTTTCATCAGTGTTCCAATTAAATTACCCTAT--TACCATTTAGAAAAAATGCGGAATGAAAATCAAAA---ATTTTAGCATTTTTTTA
s cb4.chrX              17369705  82 - 21540570 ----------caaatcttcaaaattt------tgggggaAGCAAATCATTCCaa---aacatgtatggggaaaagaaaatgaaaatgagagt--atgtcaaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170638  95 -  1794024 ----------cgattttttgattttt------tgttcgcATGAGAGAAGtcggaatgaaaattcaaacggaataaagaaaaaaaatcaaagttaattttcatattttttca
i caeRem4.Crem_Contig15 C 0 I 103
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e caeSp111.Scaffold582    205522 122 +   484378 I

a score=68.000000
s ce10.chrX              2617072 3 + 17718866 TTA
s cb4.chrX              17369787 3 - 21540570 tga
i cb4.chrX              C 0 I 97
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=0.000000
s ce10.chrX              2617075 93 + 17718866 GTACATTTTTAGTGAGAAACTGAACACATGTAGCCAATACCTCAAACAATGGGCCATAAACACTTAAAATACGGTATAAAGGGTTTAAAGTTG
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e cb4.chrX              17369790 97 - 21540570 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=-8.000000
s ce10.chrX              2617168 358 + 17718866 AATAAGAAAAGACG------CTGAAAATTCAAATTACAGGCAAAATT--AAAGTAATTATTCAAAATTTGAACCGTCATCAAAGG--TGAAGTAGCAATTTTTATTGACAGTTAAAAATAGTAATTACCCGGCTTTTGCCACTTTTTGAGA------AAAAAAAATTACTGTCGCACGTTTGAATTTCGTAAATGTATGAATATTTGAATATTAATATAAATTTGAATTG----------------AAATTTTTTTCTGATCGGCGACTACCATAAAAGTGGCAAAAACTGAGATTTTTCTAATTTTTTCAAATTTCTTCAAACAAAAAGTTTTGAAGGAAATATCCCGCTTGTGCT---ACTCTACGCTTAAAAAACCTTGAAATGTTTTCA
s cb4.chrX              17369887 357 - 21540570 aatctgaaaatacggaagttcagaatattcagatttc---taaaatttcgaaatttctcatcacaactttaaaaaaattgaaaggattTGACAAGCAGATTtcttcaaaacacaaaaaaat--attacaaGTAATCTGC------TCGAGAGCCCGCAAGGAAACTTTTGCTTACTCATTTGACATActgtaatccaaaaa-attctagtttctGAATAAATcggaaatgtaaaaaaaaccgtcgtaaaattttttccattttctga------------------aattcgaaatttctaaaactatgtcattattttttagaaatggagttttcaaattaa-gctccgctttttttcaaaatcaattctgaaaa-----taaaaaatattca
i cb4.chrX              I 97 I 82
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=0.000000
s ce10.chrX              2617526 87 + 17718866 ACGGGTCTAAttaatcgaagaaacgatgtgagataatctaccaaaatatgcaataaaatatgatatttcaaaaaaaaaaaagtcgat
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e cb4.chrX              17370244 82 - 21540570 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=-247.000000
s ce10.chrX              2617613 207 + 17718866 tttcgagcctga------------------aaggtagcaaaaattgtagaatttagctcaaattagggttttttttttgaaagtttggcccgtcttaaaaattgttgaTTTATTTTTCACTTGAACACATTTTCAGTGTAAACACACAATATTTTTTCAATTTTTCAAAAGGTAAAGTGAGTGATAACGTTTAAATGAAC---TAATAATTTTTTTTCT---AAATTAGCA
s cb4.chrX              17370326 179 - 21540570 ttttgagcttaattatctctgttTCTTTAAAGAATAGCAAAAAGTTTATAGC--agatgaaatt---------tttatcatagtgttgcctatatt---------------------------------ttatcagtg--aacata----atttttgtatatcttatagAAATCGAGTTAAT--TGAACTTAAAATATACATATGGTGAAtttctatcagaaaaactaGTA
i cb4.chrX              I 82 I 43
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=0.000000
s ce10.chrX              2617820 35 + 17718866 AACGAAATTGTGAAAACCGGATCAGTATGAAATCG
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e cb4.chrX              17370505 43 - 21540570 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=36.000000
s ce10.chrX              2617855 76 + 17718866 AAAACTATTTCCATTAGGCAAGTGTTGCGATT-------TTCATCCGAAA--ACGAGCCTAGCACACGACAAACATGCCACA-CAC
s cb4.chrX              17370548 85 - 21540570 aaaattaccGTTATTAAGGAAA-ATCCCACTTAAAATGCTTGATTCAAAACTATGAACATTCCCAAAGAAAACCATGCAAAATCAT
i cb4.chrX              I 43 I 1
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I
e caeSp111.Scaffold582    205522 122 +   484378 I
e caeRem4.Crem_Contig15   170733 103 -  1794024 I

a score=-151.000000
s ce10.chrX              2617931 7 + 17718866 TA--TCTGT
s cb4.chrX              17370634 9 - 21540570 TGATTCTCT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   170836 7 -  1794024 TG--TCTCG
i caeRem4.Crem_Contig15 I 103 C 0
s caeSp111.Scaffold582    205644 7 +   484378 TG--TTTAA
i caeSp111.Scaffold582  I 122 C 0
e caePb3.Scfld02_0       3326240 336 -  4147112 I
e caeJap4.Scaffold18213   454494 878 +   720316 I

a score=8178.000000
s ce10.chrX              2617938 35 + 17718866 CTGTCATAGAATT-CTAAAAA----------CCTTCTAAAGTGGTC
s cb4.chrX              17370643 46 - 21540570 CTGTTATAAAATTCCCATccgaccccccccccctctcagTAGGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170843 29 -  1794024 CTATTATAAAATT-CGATGAG----------------AAAAGAGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    205651 29 +   484378 CTATTATAAAATT-CTATGAG----------------AATCGAGTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3326576 29 -  4147112 CTATTATAAAATT-CCATGAG----------------AATCGAGTG
i caePb3.Scfld02_0      I 336 C 0
e caeJap4.Scaffold18213   454494 878 +   720316 I

a score=174776.000000
s ce10.chrX              2617973 678 + 17718866  
s cb4.chrX              17370689 560 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   170872 529 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    205680 532 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3326605 512 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   455372 523 +   720316  
i caeJap4.Scaffold18213 I 878 I 39

a score=7467.000000
s ce10.chrX              2618651 35 + 17718866 TTCGTGCCACG--ACTAGATAACCTGCGCGTTTCAAT
s cb4.chrX              17371249 31 - 21540570 TTCTCCCCCGG-----AGATAACCTGCGT-TTTCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   171401 32 -  1794024 GTCCCCACAGA---ATAGATAACTTGCA--TCTCAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    206212 29 +   484378 CTC------AACCGCTAGATAACCTGCG--TTTCAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3327117 35 -  4147112 CTCCCCACACACTACTAGATAACCTGCG--TTTCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   455895 39 +   720316 I

a score=31250.000000
s ce10.chrX              2618686 132 + 17718866 -AATCCGACAAGGTTACATTTGAA---A-TTGAATACGAGAGGGGGAATATAAGATGAGTGAT-GGGCA-------TGGGATTGGGGCAAAACTTGATTTT-CATTTTGATTAGCGTGTGGAACAGAG------------------------------------GTTTCAAT----GAT---GAGAAAA
s cb4.chrX              17371280 141 - 21540570 -ACTCCGACAAGGTTACGATGGAA---ATTTaaatgaaatgaaatgaaattgACATGAGTGATGGGGGAGGAGAAATTAAAG---GGGGTGGGGTAAACTT-GATTTTGATTAGCAAG-GTAGCCTTG------------------------------------ATTGGAAAATCTTAT---GGGAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   171433 173 -  1794024 -ACT-CGACAAGGTTACAGTGGAA---A--AGATTGAAATTGAATGCA---TAGATGAGTGAT-GGCCAGATGAATTGAAAT---GGCAAAACTTGATTCT-GATTTTGATTAGCGTG-GTAACCTTGCGCCGTATGCCTGtgaaaacagaacaaaagCGGAATAGTGGAATTTGCCATTGAAGGATAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    206241 119 +   484378 -ACA-CGACAAGGTTATagtgaaattga--agattgaaattgaatgaa---aagatgaGTGAT-GGCTGG------TAGAAT---CGCAAAACTTGATTCA-GATTTTGATTAGCGTG-GTAACCTTG------------------------------------------------GAT---GAGAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3327152 124 -  4147112 -ACT-CGACAAGGTTacagtggaa--aa--tgattgaaattgaatgaa---aagatgAGTGAT-GGCCGGTGAAATTAGAAT---GGCAAAACTTGATTCCTGATTTTGATTAGTGTG-GTAACCTTG------------------------------------------------CAT---GGGAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   455934 122 +   720316 AACT-CGACAAGGTTACAGAAGAT--TG--AAATTAAAAGTGGATGCA---AAAATGAGTGAT-GG-TGGAGTAATTATAAT---GAC--AGTTTCTTCTC-TATTTTGATTA---TG-TTATCGTTT--------------------------------------------TTGTGAT---GGGAAAA
i caeJap4.Scaffold18213 I 39 I 303

a score=20528.000000
s ce10.chrX              2618818 130 + 17718866 CATGAAGAACTGAGAAAAGGAGGGAAGAAAGGGTTCAAAAAAGTGAGGAAGCAGGGAGTCGAAAGCTTCATC---------CAAATATGGAAATTGTTCAATCAAGCAATGACATGGGCTCTTTGACTCTTGAATTTCA--------------
s cb4.chrX              17371421 100 - 21540570 TCTTA-------tgggacaaaaaaaatagaagg----aaaaaatggagaagggggggg------ggctgCTC---------CAAATATGGAAATTGTTCAATCAAGCAGTG--GA-AGCTCAC----------ATTTCA--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   171606  89 -  1794024 TCAGA-------Tgggagaattcaaaaaagtgg----aagaggTTGAAA-------------------GCTC---------CAAATATGGAAATTGTTCAATCAAGCAATGTCAA-GGCTCCC----------ATTTCA--------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    206360 104 +   484378 TATGG-------AGAAACGAAAGGAAGttggga----aaaaatggagaa-------------------gccC---------CAAATATGGAAATTGTTCAATCAAGCAATGTCAAGGGCTCAC----------ATTTCATTTTGGACATTTCA
i caeSp111.Scaffold582  C 0 I 190
s caePb3.Scfld02_0       3327276 116 -  4147112 CAGGGACAA---AGAAACGGAGgaaggaagtga----aaaaagtgggAG-------------------ACCCTTTGAGCTTCAAATATGGAAATTGTTCAATCAAGCAATGTCAA-GGCTCAC----------ATTTCACTATAGACATTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456056 303 +   720316 I

a score=-1354.000000
s ce10.chrX              2618948 5 + 17718866 CTTGC--
s cb4.chrX              17371521 5 - 21540570 CTTCC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   171695 5 -  1794024 CATTT--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3327392 5 -  4147112 --CCCGC
i caePb3.Scfld02_0      C 0 I 590
e caeJap4.Scaffold18213   456056 303 +   720316 I
e caeSp111.Scaffold582    206464 190 +   484378 I

a score=-59.000000
s ce10.chrX              2618953 7 + 17718866 GACGGAA-
s cb4.chrX              17371526 7 - 21540570 GACGgaa-
i cb4.chrX              C 0 I 837
s caeRem4.Crem_Contig15   171700 8 -  1794024 CACAAAGA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3327397 590 -  4147112 I
e caeJap4.Scaffold18213   456056 303 +   720316 I
e caeSp111.Scaffold582    206464 190 +   484378 I

a score=865.000000
s ce10.chrX              2618960 13 + 17718866 GTGCATAATTTTT
s caeRem4.Crem_Contig15   171708 13 -  1794024 ATGCATAAATTTT
i caeRem4.Crem_Contig15 C 0 I 169
e caePb3.Scfld02_0       3327397 590 -  4147112 I
e caeJap4.Scaffold18213   456056 303 +   720316 I
e cb4.chrX              17371533 837 - 21540570 I
e caeSp111.Scaffold582    206464 190 +   484378 I

a score=0.000000
s ce10.chrX              2618973 1335 + 17718866  
e caePb3.Scfld02_0       3327397  590 -  4147112 I
e caeJap4.Scaffold18213   456056  303 +   720316 I
e cb4.chrX              17371533  837 - 21540570 I
e caeSp111.Scaffold582    206464  190 +   484378 I
e caeRem4.Crem_Contig15   171721  169 -  1794024 I

a score=1132.000000
s ce10.chrX              2620308 49 + 17718866 ACTGAAACATGTAAAGTGGTTAAAAA----CAAACAGATAAATATTTTTTTAA
s caePb3.Scfld02_0       3327987 53 -  4147112 ACTGAAGCATctaaaactctgaaaaaaaaccaaaaggatCACCCTCACTctaa
i caePb3.Scfld02_0      I 590 I 3
e caeJap4.Scaffold18213   456056 303 +   720316 I
e cb4.chrX              17371533 837 - 21540570 I
e caeSp111.Scaffold582    206464 190 +   484378 I
e caeRem4.Crem_Contig15   171721 169 -  1794024 I

a score=8661.000000
s ce10.chrX              2620357 26 + 17718866 AAAAGTTCAGCACACCAACAAGACTA
s caeRem4.Crem_Contig15   171890 24 -  1794024 AAACTTTCAACACACCAAA--GTCTA
i caeRem4.Crem_Contig15 I 169 C 0
s caeSp111.Scaffold582    206654 24 +   484378 AAACTTTCAACACACCAAC--GACTa
i caeSp111.Scaffold582  I 190 C 0
s caePb3.Scfld02_0       3328043 24 -  4147112 aaactttcaacAAACCAAC--GACTA
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18213   456056 303 +   720316 I
e cb4.chrX              17371533 837 - 21540570 I

a score=3820.000000
s ce10.chrX              2620383 4 + 17718866 GTGT
s caeRem4.Crem_Contig15   171914 4 -  1794024 Gtgt
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    206678 4 +   484378 gtgt
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0       3328067 4 -  4147112 Gtgt
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18213   456359 4 +   720316 GTGT
i caeJap4.Scaffold18213 I 303 C 0
e cb4.chrX              17371533 837 - 21540570 I

a score=144896.000000
s ce10.chrX              2620387 189 + 17718866 GAAAAAAGTCCAATCGCTTAGTACGAAAGTGTCGTG------TCGGGAGGGGGGTGAAGAGCATGAAGTGTATAACAGAATGATTGTGGCAAGAAACAGCTGACAC--GGTTTTTGCTTA----------TCCTTCGGATCTGCCTCCTCC------AATGCCAACTGT----------------------------------GAGTATGTTTGTGA-------TATGGCAGCGGAAATGCATG-ATGATAGGTG
s cb4.chrX              17372370 242 - 21540570 gaaaaaagtccaAACGGTTAGTACGAAATCTGTGTCGAGGGCTCCTG-GCTGAGTGAAGAGCATGAAGTGTATAACAAAATGATTGTGGCAAGTAACAGCTGACACACGGTTTTTGCGTA----------TCTTCTCTATCTG--TCTTCTGGGATGGATGGCAACTGTGTTAGTGGAGATTGAGAGAGGGAGGTGGAAGAGTGTGTATGTTTGTGGATGTGATCCTGGCAGCGGAAATGCATGAATGAtcggtg
i cb4.chrX              I 837 I 1593
s caeRem4.Crem_Contig15   171927 181 -  1794024 gagaaaagtCCAAACGGTTAGTACGAAAGCGTTGTC---------------GGATGAAGAGCATGAAGTGTATAACAAAATGATTGTGGCAAGTAACAGCTGACACG-GTTTTTCGCGta----------tctct----------tcttct------gatgCCAACtgtgtgagtg----------------------agtgagtgtgtgtttgtga---------TGGCAGCGGAAATGCATG-ATGATAGGTG
i caeRem4.Crem_Contig15 I 9 I 1
s caeSp111.Scaffold582    206691 173 +   484378 gaaaaaagtccAAACGGTTAGTACGAAAGCGGTGTC----------------GGTGAAGAGCATGAAGTGTATAACAAAATGATTGTGGCAAGTAACAGCTGACAC--GGTTTTTGcgtatcttcttctctctct----------ttttct------gatgcCAAC--------------------------------------TGTGTGTTTGTGA---------TGGCAGCGGAAATGCATG-ATGATAGGTG
i caeSp111.Scaffold582  I 9 I 1
s caePb3.Scfld02_0       3328080 171 -  4147112 gaaaaaagtccAAACGGTTAGTACGAAAGCGTTGTC----------------GGTGAAGAGCATGAAGTGTATAACAAAATGATTGTGGCAAGTAACAGCTGACAC--AGTTTTTGCGTA----------TCTCT----------TCTTCT------GATGCCAACTGTGTCA------------------------------GTGTGTGTTTGTGA---------TGGCAGCGGAAATGCATG-ATGATAGGTG
i caePb3.Scfld02_0      I 9 I 1
s caeJap4.Scaffold18213   456363 164 +   720316 GAAAATAGTCCAAACGGTTAGTACGAAACCG--------------------------AGAGCATGAAGTGTATGAGAAAATGATTGTGGCAAAGAACAGCTGACATG-GTTTTTTGCGTA----------TCTTT----------TCTTCT------GATGCCAACTGTGAGT------------------------------GTGTATGTTTGTGA-------TACGGCGGCGGAAATGCGTG-ATGATAGGTG
i caeJap4.Scaffold18213 C 0 C 0

a score=8356.000000
s ce10.chrX              2620576 46 + 17718866 TTTTGGGCAACTAATTTGATGATCTTCTCTTGTCGATGAG---CTTTTT
s caeRem4.Crem_Contig15   172109 45 -  1794024 GGTTCGGCAACTAATTTGGT-CCCCACACTTGCCAGTGAG---TTTTTC
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    206865 45 +   484378 AGTTCGACAACTAATTTGG---TCCACACTTGTCAATGAGAGCGTtat-
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3328252 42 -  4147112 GGTTCGCCAACTAATTTGG---CTCACACTTGTCAatggg---ttttt-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   456527 41 +   720316 -CCTTGAAAACCAATTTGG----Ttccctttaaaaatgtt---cttttt
i caeJap4.Scaffold18213 C 0 I 901
e cb4.chrX              17372612 1593 - 21540570 I

a score=-10798.000000
s ce10.chrX              2620622 116 + 17718866 CACAAGACTTGGGCTTTTGAGAGCAAAA---------ATGAAGAAACATGATTATGTGT--AAAGTTTA-------------AATTCTGTATGATTGTCATAAACTGTAAAGCTTTTGTCTCGGC---------------------------TTGAAAGAATTTAAT
s caeRem4.Crem_Contig15   172154 121 -  1794024 ------ATACGAATTATTGATTACACAGCATtcttcagtgaaaaaaaa-------atttaaaaagattA--------------------------TTTGATAAACCAGA-------CGGTTTAGATCCGATTGATTCAAATATCAGTTTAGTTTAAAAGAATTCAAT
i caeRem4.Crem_Contig15 C 0 I 64
s caeSp111.Scaffold582    206910  62 +   484378 ----------gaa------------------------ttggaaaaaaa-------gccC--AGAGGTTG---------------------------TTTGTGTACTGAA--------GTTTTACA---------------------------TTATGATAAGTCAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3328294 104 -  4147112 ----------gaaatat--------------------ctgtGGAAAAA-------ACGT--ATCGATTGGAAAATCTTATGAAACACTAT----CTTTGGTGTTGTGAAGCGCCTCCGCTTTAGA--------------------GGTTTGTTTAAAAGAATTTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17372612 1593 - 21540570 I

a score=-3071.000000
s ce10.chrX              2620738 59 + 17718866 TTGA-AAAGTGTCGCCAGGAA--------TTG-------AACGGATGC-GATGCGATATAAAAAACCAAACCATGA
s caeSp111.Scaffold582    206972 57 +   484378 TATACCGGGTGAACGTGGAcg--ttatttttg-------aatgaatgaagaaatgaaatggaaaat----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3328398 66 -  4147112 TAAATAAAGTGCGTATAGgcgttttatttttgttataaCATCAAAGGCGGTTATGAATTGGATCAT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17372612 1593 - 21540570 I
e caeRem4.Crem_Contig15   172275 64 -  1794024 I

a score=1778.000000
s ce10.chrX              2620797 218 + 17718866 AAGTTAACATGTTTATTGTTCAGGAACCGGTTCGTCTTTTGTGTGCAACGTTGTTCGATACGATTTGTTGACAGGTTAAT-TTGACTATATAATTGGACCCAGGGTGCTGttcaacaattctacaaaatgagccattgtgcatgtcctgtcaatgtttttcactgaaattctgtataagaa---taaagaaga----acatattttttctgaaaataatgtttgtt
s caeRem4.Crem_Contig15   172339 174 -  1794024 GAGCGAACATACGTACTGTTTGAGATCAAATCCG---------------GTTACCGGTTCTGATTTTCTATC--GGT-AT-ATGTCTACGTGATG-------------CGTTGAATAATTCGAACACAAGAAGCGGAATGAACAAATTGTGAACATCGAAGGC---AGttagattgaaaaaagttacatggaa----cgcaattttttc-------aaaa------
i caeRem4.Crem_Contig15 I 64 C 0
s caeSp111.Scaffold582    207029 164 +   484378 --acgAACATGTGTACAGTTTGAGATCGAATCCG---------------GTTACCGGTTTAGAATGGGCTGT--GTTGATGTTTTTCGCATGAGT-------------TATTGAACAATTCAAACATC--AAACGGAATTATCA-----TGATTATAGACTAC-------------AGAAA---TCCAAGGTAGGCTGGGGTTTCTTTC-------AATGTCTGTG
i caeSp111.Scaffold582  C 0 I 11
s caePb3.Scfld02_0       3328464 169 -  4147112 --GCGAACATATGTACAGTTTGAGATTGATTCCG---------------GTTACCGGTTCAGATTTACTGGC--GGAAAT-TTGTTCGCATGAGT-------------TATTGAACAATTTGATCATC--GAACAAAGTAAAAA----GTGAATGTACAAAAC----------CTAGAAAA---TCcacaaaa-----gaatttttttctagaaaaaacgtCCATT
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17372612 1593 - 21540570 I

a score=-4444.000000
s ce10.chrX              2621015 75 + 17718866 tcagctagaacattgtttgaatgtttaaaattggGTACATGTGTGGTATACCTGGCCCAAAAATATTTTCCAATA
s caeRem4.Crem_Contig15   172513 30 -  1794024 --------------gttttcctgTTTAAAA---------------GTCAACCCTGGTAG----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207204 63 +   484378 -CGGACAAGGAATTGTTGtaacattttgaat--aatacA-GAATTGTTGACATTATCCAAAACCACA--------
i caeSp111.Scaffold582  I 11 C 0
e caePb3.Scfld02_0       3328633 76 -  4147112 I
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17372612 1593 - 21540570 I

a score=-8043.000000
s ce10.chrX              2621090 59 + 17718866 CGCTTTTCATTCA----CTTCTTTTAAAAA--------CGACTATTTAATTAAAACATGAAATTGA--TTTGC
s caeRem4.Crem_Contig15   172543 26 -  1794024 -----------------TTTCATCTAGAAA-------------------------CATGACATTGAGC-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207267 54 +   484378 CAATTTTGATGAACCatctgaatctgaaaa-----taacaacCTTCT------aaaaagat-ttga-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3328709 53 -  4147112 cgaattccat------tcttcttctgaacATTCTCTTCCAGTTGTTT------TTTATGAT-CCGA-------
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17372612 1593 - 21540570 I

a score=1667.000000
s ce10.chrX              2621149 11 + 17718866 ATTTTTAGGCT
s cb4.chrX              17374205 11 - 21540570 atttttgagcc
i cb4.chrX              I 1593 C 0
s caeRem4.Crem_Contig15   172569 11 -  1794024 ATTCACAAACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207321 11 +   484378 attccgatacc
i caeSp111.Scaffold582  C 0 I 64
s caePb3.Scfld02_0       3328762  9 -  4147112 --TGTGATACT
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18213   456568 901 +   720316 I

a score=-8547.000000
s ce10.chrX              2621160 63 + 17718866 TAAAAAAGCATTAATCCGTGTA-----CACGTTCTATC--TGTACAGTTTCGCAACTTTGTCTACATGTA
s cb4.chrX              17374216 64 - 21540570 --agaaagttttattttctgtCATTTCCACATTCCATCTCTATGAGGTTTG----CTTTTTGTTCTTATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   172580 59 -  1794024 --GGAAGCTT--------CGTAATCGCAATGTTCCATCT-TCTGAACTCTGAACCCATTCAACCCATACG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3328783 33 -  4147112 ------------GACCGCATTCATCCTTGTTTTTTATCA-Tgtgtg------------------------
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e caeSp111.Scaffold582    207332 64 +   484378 I

a score=45093.000000
s ce10.chrX              2621223 453 + 17718866  
s cb4.chrX              17374280 460 - 21540570  
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig15   172639 415 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207396 419 +   484378  
i caeSp111.Scaffold582  I 64 C 0
s caePb3.Scfld02_0       3328816 468 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I

a score=-1859.000000
s ce10.chrX              2621676 58 + 17718866 ATTCTCGTTTGGTGaa--------tttataaatttataatataaacataattaaGTAGGTATGATT
s caeRem4.Crem_Contig15   173054 61 -  1794024 Tttcttgttcaa-aaaaatttttttttcaatactgGTAAAGCAAA----ATTAAGTATCGAAGATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207815 38 +   484378 ATTCtcgattaa-aaa--------ttattacaTCAATGAGGAAGAC---A----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3329284 37 -  4147112 GTTCTTGTTTAA-GAA--------TTAAGAAatgggagagaaaga----a----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e cb4.chrX              17374740 56 - 21540570 I

a score=-117.000000
s ce10.chrX              2621734 2 + 17718866 GG
s cb4.chrX              17374796 2 - 21540570 GA
i cb4.chrX              I 56 C 0
s caeSp111.Scaffold582    207853 2 +   484378 GC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3329321 2 -  4147112 aa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   456568 901 +   720316 I
e caeRem4.Crem_Contig15   173115 0 -  1794024 C

a score=78910.000000
s ce10.chrX              2621736 118 + 17718866 TCAATAGACTGTGCTAATGGATCTCAAAAATTCCACAGCATCCTTGTCTTCTTTGCGACTGTTTAGCACATCCAACACATCTTTTGCTGAAA-------------------------AATCGATATTGTAAATATTATAGAAA--
s cb4.chrX              17374798 138 - 21540570 TTAGTAGACGGTGCTGATAGATCGCAAGAACTCCACAGCATCTTTGTCTTCCTTGCGGCTGTTCAACACATCCAGCACgtctttggctgaaaattgtttttttaagaCAGTATTCGTAAAGCACAGTTAGCA-----TAGAGA--
i cb4.chrX              C 0 I 540
s caeRem4.Crem_Contig15   173115 110 -  1794024 --AGTAAACGGTGCTGATGGAGCGTAAGAATTCAACAGCGTCCTTGTCTTCTTTGCGACTGTTCAACACATCCAGAACGTCTTTggctgga--------------------------aaagaaaaatttaga-----tAAAAA--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207855 112 +   484378 TTAGTATACGGTGCTGATTGAACGCAAGAACTCAACAGCATCCTTGTCTTCTTTACGGCTGTTCAATACGTCAAGAACGTCTTTGGCTGta--------------------------aataaaagttttaat-----tGTTCA--
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3329323 113 -  4147112 ttagtACACGGTGCTGATGGATCGCAAGAACTCCACAGCATCCTTGTCCTCTTTACGGCTGTTCAACACATCAAGAACGtctttggctg------------------------------aaaaatttttagttttggtaTGAA--
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   457469 117 +   720316 TCAGTAAACGGTGCTGATGGATCGCAGAAATTCAACCGCATCTTTGTCTTCTTTACGACTGTTCAACACATCCAGAACGTCTTTggctgaa--------------------------agaaaaacagtaAGATCT--CATTCATT
i caeJap4.Scaffold18213 I 901 C 0

a score=-3477.000000
s ce10.chrX              2621854 13 + 17718866 TCTGCTTGAGCT-T
s caeRem4.Crem_Contig15   173225 13 -  1794024 TCAAATGGCACTA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    207970 12 +   484378 TCATCTGGAGTA--
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3329441 12 -  4147112 TTAATTGTCGTT--
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   457586 12 +   720316 TCAGGATAAATT--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17374936 540 - 21540570 I

a score=67719.000000
s ce10.chrX              2621867 92 + 17718866 CTTACTATTGGAGACTGGTTGTATCAGGATAAGGTTGAACTGACGTAGAGTACTTCCACCAGTGGCACCGAATCCGGGAACCTGGAGGATA-A-
s cb4.chrX              17375476 86 - 21540570 CTCACTGTTAGACACTGGTTGGATGAGAATGAGATTGAACTGTCGGAGAGTGCTTCCCCCAGTAGCGCCGAATCCCGGGACCTAAA--------
i cb4.chrX              I 540 C 0
s caeRem4.Crem_Contig15   173238 92 -  1794024 CTCACTGTTCGACACTGGTTGAATCAAGATTAGGTTAAACTGACGCAGGGTGTTACCTCCAGTTGCTCCAAATCCAGGAACCTGAAAAACGA--
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    207982 91 +   484378 CTTACTATTAGATACTGGCTGAATGAGAATTAGATTGAACTGGCGAAGAGTGTTTCCACCGGTGGCACCAAATCCAGGAACCTGTAATTTA---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3329453 91 -  4147112 CTTACTGTTAGATACAGGTTGAATAAGAATCAAGTTGAATTGGCGGAGTGTGCTTCCACCAGTGGCTCCGAATCCTGGGACCTGCAGATAG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   457598 92 +   720316 CTTACTGTTTGACACAGGTTGAATGAGAATGAGGTTAAATTGCCTGAGCGTGTTTCCACCGGTTGCACCAAATCCAGGGACCTAGAGCATA--C
i caeJap4.Scaffold18213 C 0 C 0

a score=-500.000000
s ce10.chrX              2621959 4 + 17718866 AAAT-
s cb4.chrX              17375562 4 - 21540570 taat-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    208073 4 +   484378 CAGT-
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3329544 4 -  4147112 AGAT-
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold18213   457690 4 +   720316 -AATT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   173330 31 -  1794024 I

a score=170.000000
s ce10.chrX              2621963 6 + 17718866 AGTTTG-
s cb4.chrX              17375566 6 - 21540570 agtttt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    208078 6 +   484378 GGTTTT-
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   457694 6 +   720316 -ATTTCG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e caeRem4.Crem_Contig15   173330 31 -  1794024 I

a score=251.000000
s ce10.chrX              2621969 6 + 17718866 TTGatt
s caeSp111.Scaffold582    208084 6 +   484378 ATTATT
i caeSp111.Scaffold582  C 0 I 16
s caeJap4.Scaffold18213   457700 2 +   720316 ----TT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e cb4.chrX              17375572 0 - 21540570 C
e caeRem4.Crem_Contig15   173330 31 -  1794024 I

a score=-2431.000000
s ce10.chrX              2621975 391 + 17718866 gtcatttttgcaatttcggcagttg-tcaaaa---ttgccaattgccgaaatttcacaaaaccggcaattgtcggaattgccgattgccggccattttgaaaaccggcaaatgccggaaatcggaattgccagaaatAAACATTTGATACTTCTTGTTAATTTAAGAGCCTAGGCATGCATTTTAATGAAAAATTTTCTCTTTTCAAGGTCAACATGATTTAATCCTTGAAAGAAGGCTTTTTTTTCGGAAAACTACTAACCGAATATGGAAATGAACAAAGT-----GAACTTTTTCAATTTCCGAAATATATTACAATTAGGTTTGAAaattgccgaaaatgaccggttatttcggcaattgtggca-------tgtgccggaattgccgttttgccggaaattt
s caeJap4.Scaffold18213   457702 251 +   720316 -----------CGTCTcggcagctgctcataaactttgaaaatagtccATTTCTCCCGAAAC------Ttttcgga-------------gcgcatttt---------------------------------------------ttgacac--------agttgaaatgagtgtgaccgtaacccaacaaaaaat--------------gtaaacaagttt----------------------------aaaaatcacgaaaataaagagaaaataaataaaaactataaaacttgtttacatttttaaatgagttacggtcg------------------------cactcatttc---aactgtgtcaaaaaatttgcTCCGGGA----CGATTCGTGGAAAAATT
i caeJap4.Scaffold18213 C 0 I 68
e caePb3.Scfld02_0       3329548  33 -  4147112 I
e cb4.chrX              17375572   0 - 21540570 C
e caeSp111.Scaffold582    208090  16 +   484378 I
e caeRem4.Crem_Contig15   173330  31 -  1794024 I

a score=0.000000
s ce10.chrX              2622366 87 + 17718866 tcatattcggcaactgccaaaactgcggattgccgaaaacttccaaaattgggaaatatcgaaaatgctaaaTTCGTGAAATGTTGA
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e caeJap4.Scaffold18213   457953 68 +   720316 I
e cb4.chrX              17375572  0 - 21540570 C
e caeSp111.Scaffold582    208090 16 +   484378 I
e caeRem4.Crem_Contig15   173330 31 -  1794024 I

a score=273.000000
s ce10.chrX              2622453 3 + 17718866 TTA
s cb4.chrX              17375572 3 - 21540570 tta
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e caeJap4.Scaffold18213   457953 68 +   720316 I
e caeSp111.Scaffold582    208090 16 +   484378 I
e caeRem4.Crem_Contig15   173330 31 -  1794024 I

a score=213.000000
s ce10.chrX              2622456 1 + 17718866 -A
s cb4.chrX              17375575 2 - 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   173361 1 -  1794024 -A
i caeRem4.Crem_Contig15 I 31 C 0
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e caeJap4.Scaffold18213   457953 68 +   720316 I
e caeSp111.Scaffold582    208090 16 +   484378 I

a score=-1975.000000
s ce10.chrX              2622457  6 + 17718866 AAAA--------------AA
s cb4.chrX              17375577 20 - 21540570 aatatttttaaaatcttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   173362  6 -  1794024 AGCA--------------AC
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   458021  6 +   720316 AAAA--------------GC
i caeJap4.Scaffold18213 I 68 C 0
e caePb3.Scfld02_0       3329548 33 -  4147112 I
e caeSp111.Scaffold582    208090 16 +   484378 I

a score=125541.000000
s ce10.chrX              2622463 122 + 17718866 TTACATCATTCAATTCAAGAAAAGCTTCTCCTGCAAAGTCGTTCGACCTAAGATAGTCATGATCCATGACAGTAAAGTGAAGCATAGCAGTCGATGGTGGATTTGGCGGAATGTGACTGAAA
s cb4.chrX              17375597 122 - 21540570 cCACATCATTAAGTTCCAGAAATGCCTCTCCAGCAAAATCATTGGATCTCAAGTAATCATGATCCATTACAGTGAAATGAAGCATCGCGGTGGATGGCGGGTTTGGTGGGatgtggctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   173368 122 -  1794024 TCACATCATTGAGTTCTAAGAAAGCCTCTCCTGCGAAGTCGTTGGATCTCAAGTAGTCATGATCCATGACAGTAAAGTGAAGCATTGCAGTTGATGGTGGGTTTGGAGGGATGTGGCTGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    208106 122 +   484378 TTACATCATTCAGCTCCAAAAATGCTTCTCCTGCGAAGTCATTAGATCTCAAATAGTCGTGATCCATAACAGTGAAATGAAGCATTGCAGTAGATGGTGGATTTGGTGGAATGtggctgaaa
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3329581 122 -  4147112 TCACAtcattcaattccaaaaatgcttCTCCTGCAAAATCATTGGATCTCAAATAGTCGTGATCCATCACAGTGAAGTGAAGCATGGCAGTAGATGGCGGATTTGGAGGAATGTGGCTGAAA
i caePb3.Scfld02_0      I 33 I 38
s caeJap4.Scaffold18213   458027 122 +   720316 TTACATCATTAAGCTCTAGAAAAGCTTCACCGGCAAAGTCGTTTGAACGGAGATAATCATGATCCATGACAGTGAAATGGAACATCGCGGTCGATGACGGGTTTGGTGGAATGTGGctaaaa
i caeJap4.Scaffold18213 C 0 C 0

a score=-9729.000000
s ce10.chrX              2622585 35 + 17718866 ATATTGCAATTATACTTTGTCAAAAT--CTGCATTTT---------
s cb4.chrX              17375719 26 - 21540570 -----------atcgagagtTAAAACagactcaaatt---------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   173490 24 -  1794024 -----------ATACATAAATgagtt--atttagttt---------
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    208228 12 +   484378 -----------------------aat--aatcttttt---------
i caeSp111.Scaffold582  C 0 I 24
s caeJap4.Scaffold18213   458149 41 +   720316 ---ttaattgttttatcTCTtaaatt--cttcttcttctttatATT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3329703 38 -  4147112 I

a score=301800.000000
s ce10.chrX              2622620 703 + 17718866  
s cb4.chrX              17375751 732 - 21540570  
i cb4.chrX              I 6 I 95
s caeRem4.Crem_Contig15   173526 742 -  1794024  
i caeRem4.Crem_Contig15 I 12 I 24
s caeSp111.Scaffold582    208264 752 +   484378  
i caeSp111.Scaffold582  I 24 I 41
s caePb3.Scfld02_0       3329741 759 -  4147112  
i caePb3.Scfld02_0      I 38 I 9
s caeJap4.Scaffold18213   458190 749 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-8896.000000
s ce10.chrX              2623323 45 + 17718866 -----AAAAAATCACGTTTGA-AAACAAAAACCATATATAAATATAGTCGA
s caeRem4.Crem_Contig15   174292 33 -  1794024 -----GAGAAAATGTA-------------AATCACATTCAAACAGTTATAA
i caeRem4.Crem_Contig15 I 24 I 4
s caeSp111.Scaffold582    209057 38 +   484378 -----AGGAAACAGTATGTG--------TAACACATTTCGGATAGTTTCAA
i caeSp111.Scaffold582  I 41 I 4
s caePb3.Scfld02_0       3330509 35 -  4147112 --------AAATTGTGTTTT--------AAATCACtttaaaataataaaaa
i caePb3.Scfld02_0      I 9 I 5
s caeJap4.Scaffold18213   458939 45 +   720316 AAGTGGGAGGACTGTCACaaattaaaaagaataaaatggaaatga------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17376483 95 - 21540570 I

a score=127234.000000
s ce10.chrX              2623368 333 + 17718866 GAAAACGAAACAAAGCTCATGAA--AATGAAAA-------TGCGCCCTGTTGTGAGAA---------------------GGTGCAA--GGAAA---GTGTATGAAGCAAAATAG--ATCAAGCTG--GAAAATTAAAG-AAATGAAA-----------AAAAAACTGTTAAGTGTGTGTATGTGTGTGTCTGTTAATGAGGGTCTGTGCA---ATAAC-AGTAGTGACGTTTTAGT-AAGATAGCAATAG-GAAAATTTGAAGATAGAACAGCTGGTAAAAATGAGAATA---------G---GCAATTC---AAC--AAACCTGTTGTTTCAAAAGATCCTTATAGTATTTCTCAATCAGCTGCTCAGTTGGAGTTTGATTTAACGAGAGAATTTTTACAAGTTTC
s cb4.chrX              17376578 329 - 21540570 gaagatgaaaaaaagcgttaagaaaaatgaaaaattgatgcgCGCCTCAATG---------------------------GGTGCACTCAAAAA---GTAGGAT-AAGCGATTAGATATCAAGCcggaaaaaattagagaaaatgaaaaatataaatataaaaCACT-----TTGTGTGAATA----------------------GGTGCG---AAGACAAATAGTGAG-TGTTAGTAAAGATAGCGATAG-ATAAA----AGGGAcagatgtctg----aaaaatggttcTGTTGCTGAG---ATTATG----AAACGATACCTGCTGTTTGAGAAGATCCTTGTAGTATTTTTCAATGAGTTGTTCCGTTGCTGTTTGGTTCAGGGAGAGGATTTTGACcagtttc
i cb4.chrX              I 95 C 0
s caeRem4.Crem_Contig15   174329 295 -  1794024 ATAGGTAGAGTAAAGCgtggaaaataatgaaaa-------tgcGCCTCATCGTGAAAAA--------------------GGTGCAT---GAAA---GTGAAAC-AGCAAAATAG--ATCAAGccg--aaaaattagag-aaatg--------------aaaataca-----tTGTGTGATT------------------------GTGCA---AAAACTAAT-GTGAT-TGTTAGT-AAGACAGCGATAG-AAAAGTTATAGATAAAGATTGCCG-----GAAGTGGTTT---------G---ATAATA----AAA--ATACCTGTTGTTTGAGAAGATCTTTGTAATACTTTTCAATGAGCTGCTCAGTTGGAGTTTGGTTCAATGACAAgattttcacaagtttc
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    209099 309 +   484378 AAAGTAAAGGTAAAGCGGtggaataattgaaaa-------tgcgCCTCATCGTGAGAT---------------------GGTGCAT---GAAA---GTGGAATAAGCAAAATAG--ATCAAgctg--gaaaatgaaag-aaatg--------------aaaacactGT---TTGTGTGATT------------------------Gtgcgaaaaaaac-aatagtgAT-TGTTAGT-AAGACAGCGATAGAAAAAGTTAGAGATTGAAActgctg----aaaaaagattt---------gttTAGAGTGCAGTAGC--GTACCTGTTGTTTCAAAAGATCTTTGTAGTATTTCTCGATGAGTTGCTCAGTGGGAGTTTGATTCAGAGATAGTATCTTCAccaatttc
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3330549 293 -  4147112 aatagaaagagaaagcgttggaa-atatgaaaa-------tgcgCCTTATAGTGAGAA---------------------GGTGCAT---GAAA---GTGGGATAAGCAAAATAG--A-CAAGCCg--gaaaattaaag-aaatg--------------aaa--actg----ttgTGTGAAT------------------------GTGCG---AGAAC-AATAGTGAT-TGTTAGT-AAGACAGCGATAG-AAAAGTTAGAGATAGATATTGCAG----GACCGGgatct---------g---aaattg----aac--atACCTGTTGTTTGAGAAGATCTTTGTAATACTTTTCAATGAGTTGCTCTGTTGGAGTTTGGTTCAGTGAAAGGATCTTCACCAGTTTC
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   458984 316 +   720316 -----aaaaggaaagcg--------atcgaaaa-------gGCACACCATCAGTAAAACTGTGTAATGAGCAAAACAATGGTGCAT---TAAACGGTTGTGATAAGCAAATTAG--ATCAAgccgaaaaaaataacaa-aaattaat-----------taaaaactt----TTGTGTGAT-------------------------GTGCG---GAAAC-GAGTGAAAT-GGTTAGA-TGGATAGCGATAGGTTATGTTAAAAATAGAGATagcta---aaaacattttta---------a---atgaca----AAGTAATACCTGTTGTTTGAGAAGATCTTTGTAGTACTTTTCAATGAGTTGCTCAGTTGGAGTCTGATTAAGTGATAAAATCTTGACAAgccgc
i caeJap4.Scaffold18213 C 0 C 0

a score=1222.000000
s ce10.chrX              2623701 5 + 17718866 TGGAA
s cb4.chrX              17376907 2 - 21540570 tg---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   174624 5 -  1794024 tGAAA
i caeRem4.Crem_Contig15 C 0 I 34
s caeSp111.Scaffold582    209408 5 +   484378 tgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3330842 5 -  4147112 TGAAA
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold18213   459300 0 +   720316 C

a score=759.000000
s ce10.chrX              2623706 5 + 17718866 AAAAT
s cb4.chrX              17376909 3 - 21540570 --aat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    209413 5 +   484378 gaaat
i caeSp111.Scaffold582  C 0 I 35
e caePb3.Scfld02_0       3330847 40 -  4147112 I
e caeJap4.Scaffold18213   459300 0 +   720316 C
e caeRem4.Crem_Contig15   174629 34 -  1794024 I

a score=476.000000
s ce10.chrX              2623711 24 + 17718866 ATCACTCTTTCAATTACTAACGTT
s cb4.chrX              17376912 24 - 21540570 ttaattCATTAAAATAGTAATTTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3330847 40 -  4147112 I
e caeJap4.Scaffold18213   459300  0 +   720316 C
e caeSp111.Scaffold582    209418 35 +   484378 I
e caeRem4.Crem_Contig15   174629 34 -  1794024 I

a score=0.000000
s ce10.chrX              2623735 387 + 17718866 ATCACTATTCAGTTCTACAAAACACTTATTAtggagtggcgtcagcgggaaaattgctttaaagaactcctatggctccgaatatcgaaatgaaaaaaaattcaaaaaaattttcagaattttacaagatttttgaaagatGGTACAACCGCAGTTTTTGTCTAATTAAAATTGAGTTGaaaaacgttctgacgtcactttttttggaaaaaaatcccgcttttttagtagatcaaaccgtgatgggagaccctaggcaAAAACTGGAATTTTATCAACTTTCAAAAAATCTTATAAAATTTAGACTATTTAGTGTTTTTATTTCAATTTTTTACTATGATATTTTTCCCCACGGACACTACTCCGTCTTTGAATATTCTTTTCACT
e caePb3.Scfld02_0       3330847  40 -  4147112 I
e caeJap4.Scaffold18213   459300   0 +   720316 C
e cb4.chrX              17376936   0 - 21540570 C
e caeSp111.Scaffold582    209418  35 +   484378 I
e caeRem4.Crem_Contig15   174629  34 -  1794024 I

a score=686.000000
s ce10.chrX              2624122 19 + 17718866 TGAAAAAAAAAC----TAAAACC
s caeJap4.Scaffold18213   459300 23 +   720316 tgaaaaaaaaacacgataaTTTC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3330847 40 -  4147112 I
e cb4.chrX              17376936  0 - 21540570 C
e caeSp111.Scaffold582    209418 35 +   484378 I
e caeRem4.Crem_Contig15   174629 34 -  1794024 I

a score=-841.000000
s ce10.chrX              2624141 20 + 17718866 ACTTAAAATTGTCGACAACA
s cb4.chrX              17376936 20 - 21540570 GATAAAGCTTAATTAAACCA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   459323 20 +   720316 TTTTAGCTTTTTTGGCTTTA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3330847 40 -  4147112 I
e caeSp111.Scaffold582    209418 35 +   484378 I
e caeRem4.Crem_Contig15   174629 34 -  1794024 I

a score=365609.000000
s ce10.chrX              2624161 500 + 17718866  
s cb4.chrX              17376956 506 - 21540570  
i cb4.chrX              C 0 I 1071
s caeRem4.Crem_Contig15   174663 504 -  1794024  
i caeRem4.Crem_Contig15 I 34 C 0
s caeSp111.Scaffold582    209453 500 +   484378  
i caeSp111.Scaffold582  I 35 C 0
s caePb3.Scfld02_0       3330887 519 -  4147112  
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold18213   459343 510 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-9649.000000
s ce10.chrX              2624661 19 + 17718866 GAGC----TGGTAGAATTTGA--GT
s caeRem4.Crem_Contig15   175167 17 -  1794024 -CAC--TTT---ATAATTTCAAA--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    209953 20 +   484378 AAACGATTCGGCATGAT-TGA----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3331406 15 -  4147112 aaac--ttc----tgatctAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   459853 15 +   720316 ------tatcAGGTGGTGTAT----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17377462 1071 - 21540570 I

a score=261925.000000
s ce10.chrX              2624680 392 + 17718866 TCCTTACGTTAAGCCGACTAGCGTCGCGTTCATACGCCAAAGACATGTCATCCATGTGAAGTTTCTCTGTGATGTTGAGACTACGACGGACTTGTTCGCAATTGTTGATCGCAGCACATAACTGAAAAATGAA-AACTATAGAGTAT-----ACATTTACATATTCT---------------TGGCCCAT-----ACCAAATGCAACAGTTGTGATGGAATGAATGCTTGCAGTTCTTGGGTGAATCCTTCCGCTTCCAATCCAGAGATTATTTTCTGTGTATAGACTGTGACAATTTCGCAAATCACGTCAACCAGTTGTCGTGTGTACTCGATTTTCAAACCGGCATCGTTGATGTCCACACGCTCCCAAAACACCGTAAACTAAAAAGTCAAACGTTGAAAGTGGTAAGGATAAA
s cb4.chrX              17378533 362 - 21540570 TTCTTACATTGAGCCGACTTGCATCACGTTCATAAGCCAGCGACATATCATCCATATGAAGCTTCTCAGTGATGTTCAGACTACGACGCACTTGTTCACAATTGTTGATGGCGGCACAGAGCTGGAATACATA-AACTTCTATGTCTCATATTC-------TACCGT---------------ACACCCCT-----ACCAAATGTAGAAGCTGCGATGGAATGAAAGTCTGAAGCTCCTGTGTAAATCCTTCCGCTTCCAAAccagaaataattttttgacagtATACAGTAACAATTTCGCAGATAACGTCAACCAAAAGACTGGTGTACTCGATTTTCAAGCCGGCATCATTGATATCTACTCGCTCCCAAAATACCGTGAACT----------------------------GTAAT
i cb4.chrX              I 1071 I 32
s caeRem4.Crem_Contig15   175184 390 -  1794024 GTCTAACATTGAGACGACTGGAGTCACGTTCATAAGCCAACGACATGTCATCCATATGGAGTTTCTCAGTGATGTTGAGACTGCGACGCACTTGTTCACAGTTGTTAATGGCAGCAcacaactgaaaataatatgatTAATGAGATTAGGAAGC-------GTCTTT---------------TCGGTTTT-----ACCAAGTGCAAGAGTTGAGATGGTATGAATGTGGTAAGCTCTTGAGTGAATCCTTCGGCTTCCAAAccggaaataattttttgagtgtaAACTGTGACAATGTCACAAATGACTTCGACAAGGAGTCTGGTGTACTCAATCTTCAGACCAGCGTCGTTGATATCAACGCGCTCCCAGAATACGGTAAACTGAAAGGGAATATGTTCACGGTTGCAC-Ggtaat
i caeRem4.Crem_Contig15 C 0 I 254
s caeSp111.Scaffold582    209973 360 +   484378 TGATTACATTGAGTCTACTGGCGTCTCTCTCGTAAGCCAGAGACATATCATCCATGTGAAGCTTTTCGGTGATGTTGAGACTGCGACGAACTTGCTCGCAGTTATTGATAGCAGCGCACAACTGAAAACTCTA--ATTAAcgtgttt-----tc-------ttgttt---------------tcactCAT-----ACTAAATGCAAAAGTTGAGATGGAATGAATGTTTGGAGTTCCTGAGTGAATCCTTCTGCTTCCAATCCCGAGATGATCTTTTGAGTATAAACTGTGACGATGTCACAAATGACGTCTACAAGGAGTCTTGTGTACTCGATCTTGAGACCGGCATCGTTAATGTCCACACGCTCCCAGAAGACggtgaactgaaa------------------------atgat
i caeSp111.Scaffold582  C 0 I 22
s caePb3.Scfld02_0       3331421 377 -  4147112 AACTTACATTGATCTTGCTTGCATCTCTTTCGTAAGCAAGAGACATATCATCCATGTGAAGTTTTTCAGTGATGTTGAGACTACGACGAACTTGCTCACAGTTATTGATAGCAGCgcacaactgaaaatttta--tat----tgttt-----AC-------TAGCatgaattatcaaaaaagtaaactgT-----ACCAAGTGCAAAAGTTGAGATGGAATGAAAGTTTGAAGTTCCTGGGTGAATCCTTCGGCTTCCAATCCggagataattttttgagtgtaGTTGGTAACGATTTCACAGATGACATCGACAAAAAGTCTGGTgtattcgattttcaaagcGGCATCGTTAATATCAACACGCtcccaaaaaatggtgaacTAAAAAATGAT------------------ATGAT
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold18213   459868 388 +   720316 TGATTACATTTATCTTGCTCGCGTCTCGCTCATATGCAAGAGACATATCATCCATGTGCAACTTTTCGGTAATGTTCAGACTGCGGCGGACTTGTTCACAATTGTTGATTGCGGCGCACAGCTGAAAATTACAGGATTCAATGATTT-----TC-------CCTCAT---------------TTGTGTTTTTCTAACCAAGTGTAAAAGTTGCGATGGGATAAAAGTTGTCAGCTCTTGCGAGAAGCCTTCCGCTTCCAGTccggaaattattttttgaacataaatagtAACAATCTCGCAGATGACGTCGACGAGAAGTCTGGTGTACTCGATTTTCAGGGCAGAATCATTGATGTCTACACGCTCCCAGAAAACAGTAAACTAAAAAATGACAATGTCTTAATACCAAT-ATA--
i caeJap4.Scaffold18213 C 0 I 3

a score=813587.000000
s ce10.chrX              2625072 991 + 17718866  
s cb4.chrX              17378927 945 - 21540570  
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig15   175828 980 -  1794024  
i caeRem4.Crem_Contig15 I 254 C 0
s caeSp111.Scaffold582    210355 939 +   484378  
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0       3331819 938 -  4147112  
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold18213   460259 985 +   720316  
i caeJap4.Scaffold18213 I 3 C 0

a score=1304.000000
s ce10.chrX              2626063 11 + 17718866 CTGAAAATATA
s caeRem4.Crem_Contig15   176808 10 -  1794024 ctataaaaat-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    211294 11 +   484378 CTGTAAACTCA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   461244 11 +   720316 CTGAAAATACA
i caeJap4.Scaffold18213 C 0 I 36
e caePb3.Scfld02_0       3332757  0 -  4147112 C
e cb4.chrX              17379872  0 - 21540570 C

a score=100.000000
s ce10.chrX              2626074 1 + 17718866 G
s caeSp111.Scaffold582    211305 1 +   484378 G
i caeSp111.Scaffold582  C 0 I 30
e caePb3.Scfld02_0       3332757 0 -  4147112 C
e caeJap4.Scaffold18213   461255 36 +   720316 I
e cb4.chrX              17379872 0 - 21540570 C
e caeRem4.Crem_Contig15   176818 0 -  1794024 C

a score=546.000000
s ce10.chrX              2626075 6 + 17718866 TTTAAT
s caeRem4.Crem_Contig15   176818 6 -  1794024 tttaat
i caeRem4.Crem_Contig15 C 0 I 34
e caePb3.Scfld02_0       3332757 0 -  4147112 C
e caeJap4.Scaffold18213   461255 36 +   720316 I
e cb4.chrX              17379872 0 - 21540570 C
e caeSp111.Scaffold582    211306 30 +   484378 I

a score=0.000000
s ce10.chrX              2626081 418 + 17718866 AAATACACTCAACAGTAAGGTACTGCGTGACGAGTACGCATATATCCCAAGAAACATCACGATAACGGGACGTTCaaaatcaggacctcagacaatatcagccgccgacgttttacgagttccgcacgccatcatgtttattgcgctgtaggtgtcatgagttgtccgctgcgatgaaaacatacggaggcgcggaactcgtaaaacgccggcggactgtgttggttggGTGTAGGGCTGGCACATATTGAATTTTGAAAGTTTTCGAAGGGGTAGGTTTTCACGGCGGCCGACATTTTCCGAGTTTGGCCACTCACTATATTTAATCACAGAATTTTATAATGAGTGGCTAAACTCGGAAATTGTCGGCCGCTGGGAAAACCTACCCCTCGGAACATTTTCAAAATGCGACAAAATT
e caePb3.Scfld02_0       3332757   0 -  4147112 C
e caeJap4.Scaffold18213   461255  36 +   720316 I
e cb4.chrX              17379872   0 - 21540570 C
e caeSp111.Scaffold582    211306  30 +   484378 I
e caeRem4.Crem_Contig15   176824  34 -  1794024 I

a score=602.000000
s ce10.chrX              2626499 3 + 17718866 CTC
s caeRem4.Crem_Contig15   176858 3 -  1794024 CTT
i caeRem4.Crem_Contig15 I 34 C 0
s caeSp111.Scaffold582    211336 3 +   484378 CTT
i caeSp111.Scaffold582  I 30 C 0
e caePb3.Scfld02_0       3332757 0 -  4147112 C
e caeJap4.Scaffold18213   461255 36 +   720316 I
e cb4.chrX              17379872 0 - 21540570 C

a score=1146.000000
s ce10.chrX              2626502 2 + 17718866 AC
s caeRem4.Crem_Contig15   176861 2 -  1794024 AC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    211339 2 +   484378 AC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   461291 2 +   720316 ac
i caeJap4.Scaffold18213 I 36 C 0
e caePb3.Scfld02_0       3332757 0 -  4147112 C
e cb4.chrX              17379872 0 - 21540570 C

a score=464623.000000
s ce10.chrX              2626504 494 + 17718866 CACATAGCTAGATGAACATCTGTGAGATCTCCCTGAATCGCATGTTGACGAAGAATAATCATTGCCCGCTCTGGGTAGACCCCATCCCAAAACCTCACAGGTTGTCCAGTTTGCCGAATTTCGTACAGAGCAAACTGGCGAAGCAGCTCGATGTGCTCTTTCACATCCAATGTTTCATCCTCATCTCCAGCTCGGCCTTCTTCTTTGGTCGACAGCCAAATTTTGAGTTTGACCTGCCCGCTGACTTTACTCTTGTCAGAACGGGGTTGAAGAGTGAACCATTGCTCCAAACCGTCCGGCGGGATTTCGGCGAGCTTCATGTTGATGCATCCAAGAAAATCGTCGGTGCAATCATCGGAATTAGCTCGAGCGCTTTGTGTGACTTCTTTGAAATATCTTCCGATCCCTTTAAACCCTCCTGTTATCTGATTCAAGGAGGAAACCGCATCAAGAACCGATTGTTCTTCGTCGTCATGGTCCCTGAAA-TAATTATT
s cb4.chrX              17379872 494 - 21540570 CACATGGCTAGATGAACATCGGTGAGATCTCCTTGGATGGCATGTTGACGGAGGATGAGCATAGCTCTTTCAGGATAGACACCATCCCAGAAGCGAACTGGTTGGCCAGTCTGACGGATTTCGTATAGGGCAAACTGACGGAGAAGCTCGATGTGTTCCTTCACATCCAAAGTCTCATCATCGTCTCCAGCACGTCCTTCCTCTTTGGTCGACAGCCAGATCTTCAACTTTACTTGCCCACTGACCTTGCTCTTTTCGGATCTTGGTTGAAGAGTGAACCATTGTTCCAAACCTTCCGGTGGAATCGTTTCAAGTTTCAAGTTGATGCATCCGAGGAAGTCGTCGGTGCAATCGTCAGAGTTGGCACGAGCACTTTGGGTGACTTCTTTGAAGTATCTTCCGATTCCTTTCAATCCTCCAGTGATCTGATTGAGGGAGGAAACTGCGTCCAGAACGGATTGCTCTTCATCATCATGATCCCTGAAA-TAGGAATT
i cb4.chrX              C 0 I 477
s caeRem4.Crem_Contig15   176863 495 -  1794024 CACATCGCAAGATGCACATCTGTGAGATCTCCTTGGATCGCATGTTGACGCAAAATGATCATAGCCCTCTCTGGATAGACTCCATCCCAGAAACGTACTGGTTGTCCTGTCTGGCGGATCTCATACAATGCAAATTGACGGAGAAGCTCAATATGCTCCTTCACATCCAGAGTCTCGTCATCATCTCCAGCGcgtccttcttcttttgtcGACAACCAGATCTTCAGTTTGACCTGCCCACTCACTTTGCTCTTCTCCGAACGTGGCTGGAGGGTAAACCATTGTTCCAATCCCTCTGGTGGGATCTCAGCAAGCTTGAGATTGATGCATCCGAGGAAGTCGTCAGTGCAGTCGTCAGAGTTGGCACGAGCACTTTGAGTAACTTCCTTGAAGTATCTTCCAATACCTTTGAATCCTCCACTGATTTGATTGAGAGAAGAAACCgcatcaaaaactgattgcTCCTCATCATCATGATccctgaaaccaaaaatt
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    211341 479 +   484378 CACATAGCAAGATGAACATCAGTCAAATCTCCTTGGATGGCGTGTTGACGGAGAATAATCATAGCTCTCTCCGGATAAACACCATCCCAGAATCTGACTGGCTGTCCAGTTTGACGGATCTCGTACAAAGCAAATTGACGAAGAAGTTCGATGTGTTCCTTGACGTCCAAAGTTTCATCATCGTCTCCAGCACGTCCTTCTTCCTTTGTCGACAACCAGATCTTCAATTTCACTTGACCGCTCACTTTGCTCTTCTCGGAACGTGGTTGAAGAGTGAACCATTGCTCCAAGCCCTCTGGTGGAATCTCAGCGAGTTTCAAGTTGATGCATCCAAGGAAGTCATCGGTACAATCATCAGAATTAGCACGAGCACTTTGAGTAACTTCCTTGAAATATCTTCCGATACCCTTGAATCCCCCAGTTATTTGATTCAAAGAAGAGACTGCATCCAGAACCGATTGCTCTTCGTCGTCATGATC----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3332757 495 -  4147112 CACATTGCGAGATGAACGTCGGTCAGATCTCCTTGGATAGCATGCTGACGGAGAATAATCATAGCTCTCTCTGGATAGACACCGTCCCAGAATCTGACTGGTTGACCGCTGGTACGGATCTCATGAAGAGCAAATTGACGGAGAAGCTCAATATGCTCCTTAACATCCAAagattcatcatcatctccagTACGTCCCTCTTCCTTTGTCGACAACCAGATTTTCAGCTTGACCTGTCCACAGACCTTGCTTTTCTCTGAACGTGGTTGGAGAGTGAACCATTGCTCCAAACCCTCTGGTGGGATCTCAGCCAGCTTCAAGTTGATACATCCCAAGAAGTCATCAGTGCAGTCGTCAGAGTTGGCACGAGCACTTTGAGTGACTTCCTTGAAGTATCTTCCGATACCTTTGAATCCACCAGTGATTTGATTGAGCGATGAAACTGCATCCAAAACTGATTGCTCCTCGTCATCATGATCCCTatagggaaaaaaa
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   461293 495 +   720316 CACATAGCCAAATGAACATCAGTTAGGTCTCCTTGAATTGCATGTTGCCGGAGAATAATCATGGCTCTTTCTGGGTACATGCCATCCCAGAAACGAACTGGCTGACCGGTCTGTCGAATTTCGTACAAAGCAAACTGACGGAGCAGTTCAATATGCTCCTTGACATCAAGAGTTTCATCTTCTTCACCTGCTCTTCCTTCCTCTTTGGTAGAGAGCCAAACTTTCAGTTTGACTTGTCCACTGACTTTGCTCTTTTCTGAACGGGGCTGAAGAGTGAACCACTGTTCAAGTCCATCTGGGGGAATTTCTGCCAATTTGAGATTGATACACCCAAGAAAATCATCTGTGCAATCGTCAGAATtggcacgagcgctctgagtTACTTCTTTGAAGTATCTTCCAAGTCCTTTCAACCCTCCAGAAATTTGATTGAGCGATGATACAGCGTCAAGAACTGATTGCTCTTCGTCGTCATGATccctgaaaaattttatt
i caeJap4.Scaffold18213 C 0 C 0

a score=-3996.000000
s ce10.chrX              2626998 15 + 17718866 GTTCAGGGCAAAACT---------
s caeRem4.Crem_Contig15   177363 13 -  1794024 ATTATGAGC--TATT---------
i caeRem4.Crem_Contig15 I 5 I 7
s caePb3.Scfld02_0       3333255  3 -  4147112 ------------att---------
i caePb3.Scfld02_0      I 3 I 8
s caeJap4.Scaffold18213   461788 18 +   720316 ------ggtAACATATGCAATAAG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17380366 477 - 21540570 I
e caeSp111.Scaffold582    211820  0 +   484378 C

a score=380579.000000
s ce10.chrX              2627013 653 + 17718866  
s cb4.chrX              17380843 523 - 21540570  
i cb4.chrX              I 477 C 0
s caeRem4.Crem_Contig15   177383 550 -  1794024  
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    211820 501 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3333266 529 -  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   461806 524 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-30014.000000
s ce10.chrX              2627666 138 + 17718866 GGTTATGTTTAATATCATTTAAAGGAGGAATAGAGTTTGTAGGTATTTTGCTTAAATAGACTAGAACTGGCCAAATTTAAGTATAAGACTTCTCAACAAATTTCCAAAAAAAGAACCAACTTTTGC--TGGAATCTGATT
s caeRem4.Crem_Contig15   177933  17 -  1794024 --------------------------------------------------------------------GGCAGATTTTCG---------------------TTTAA----------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    212321  57 +   484378 ------ATTGGCTTT-----------------------------------------------GTTCCAGGtgaattttat----------------attatttgAACAACAACGGC-------TGC-------TCTGATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3333795  58 -  4147112 ------GTTGAATGTCA------------------------------------------AGCATAACAGGTGATGTTGAG---------------AAATATTCTCATAACAATGA-------------------CTAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   462330  43 +   720316 ------------------------------------------------------------------------------------------------ATTATTCAGAATACGAAAATAAGTCGTGAAAATGTGATGTGAT-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17381366   0 - 21540570 C

a score=-29623.000000
s ce10.chrX              2627804 86 + 17718866 TTTTGAGAAGTCTCAC----------CATGGAAATTGGTAGTTTTTACCCAGTTTTAATTTATCACCATTTTTTTGTTTCACTATTTTTTCTTGGA
s cb4.chrX              17381366 35 - 21540570 TTGCGACAGGTGACTT------------------------TTTTGCTACTAGATATACT-------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   177950 63 -  1794024 ---TGACAGGTGATTT-ATACCCAGTGATTAACGATacaatttttctattgaatatattttctaaaa-----------------------------
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    212378 16 +   484378 --------------------------CATTCATA----------------AATTCTAA--------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3333853 26 -  4147112 --------------------------CATGAAAACCAACATT------CTAAATCTAA--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   462373 33 +   720316 --GAAACAGGTGATTTTGTATTTACTGATACACCA-------------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0

a score=-12941.000000
s ce10.chrX              2627890 43 + 17718866 CTTTCACTTTTACAAGTTTCTAATCAAGATTCAACATCATACG
s cb4.chrX              17381401  1 - 21540570 ---------------------------G---------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    212394 12 +   484378 -------------------------GGAAACTA--ATCT----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3333879 14 -  4147112 -------------------------CAGAATCAGTACCA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   462406 13 +   720316 -----------GCAACCCTCCGCT-------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   178013 17 -  1794024 I

a score=203518.000000
s ce10.chrX              2627933 187 + 17718866 AACCTTATTTTGCTTCGCCTTTTCCATGAGAGCATTGTGGACAGCCGCATCACCTTGGAACGCATTACGCACGTATTTGTAGAGACTCTCCTGACTCTCTTCCACGTCTCCTTGGCCCAGTTTGTGAGTAATAGTGTACAACGCCTCCACATAAAGAGCCTG-AAAAGAAGAAGCACTCGACT-AATAG
s cb4.chrX              17381402 189 - 21540570 TACCTTGTTTTGTTTGGCTTTTTCCATGAGCGCTGTGTGAAGCGCGGCATCACCTTGGAACGCATTACGCACGTATTTGTACAAGCTCTCCTGACTTTCTTCCACATCTCCCTGTCCTAGTTTGTGGGTAATCGTGTACAACGCCTCCACATAGAGAgcctgaaaaagaagaagcactTGACTAAATac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   178030 187 -  1794024 AACCTTGTTCTGTTTCGCCTTTTCCATGAGAGCGGTGTGAAGAGTCGTATCACCTTGGAAAGCGTTACGAACATACTTGTAGAGGCTCTCCTGACTTTCCTCAACGTCTCCTTGGCCCAGTTTGTGGGTAATAGTGTACAACGCCTCCACGTAGAGAgcctg-aaaagaagaagcacTCGACT-AATAC
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    212406 184 +   484378 AACCTTGTTCTGTTTTGCCTTCTCCATGAGCGCATTGTGCAGAGTAGCATCACCTTGGAACGCATTTCGCACATACTTATAGAGGCTCTCCTGACTCTCTTCCACGTCTCCTTGGCCCAGTTTGTGGGTAATAGTGTACAACGCCTCCACATAAAGAGCCTG-AA---AAGAAGCACTCGACT-AATAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3333893 187 -  4147112 AACCTTGTTTTGCTTTGCTTTCTCCATAAGAGCATTGTGAAGAGCGGCATCACCTTGGAACGCGTTACGCACATACTTGTAGAGACTCTCCTGGCTTTCTTCCACGTCTCCTTGGCCCAGTTTGTGGGTAATAGTGTACAACGCCTCCACATAGAGAgcctg-aaaagaagaagcactCGACT-AATAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   462419 182 +   720316 AaccttgttttgttttgctttttccaTGAGAGAATTGTGGAGAGCCGCATCACCTTGGAACGCATTACGAACGTATTTGTAAAGACTCTCCTGACTCTCCTCCGCATCTCCTTGGCCAAGTTTGTGGGTAATGGTGTACAACGCCTCCACATAGAGAGCCTG------AAGAGCCACTTCACT-AATAG
i caeJap4.Scaffold18213 C 0 I 86

a score=2187.000000
s ce10.chrX              2628120 3 + 17718866 GGG
s cb4.chrX              17381591 3 - 21540570 ggg
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig15   178217 3 -  1794024 GAG
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    212590 3 +   484378 GAG
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3334080 3 -  4147112 GAG
i caePb3.Scfld02_0      C 0 I 153
e caeJap4.Scaffold18213   462601 86 +   720316 I

a score=-3371.000000
s ce10.chrX              2628123 14 + 17718866 TTTTTGTGAG------TGTG--
s cb4.chrX              17381614 14 - 21540570 tttttgtg--------tgtgtg
i cb4.chrX              I 20 I 225
s caeRem4.Crem_Contig15   178222  5 -  1794024 -----------------GTACG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    212598 14 +   484378 ------CGAAAAGGATTGTG--
i caeSp111.Scaffold582  I 5 C 0
e caePb3.Scfld02_0       3334083 153 -  4147112 I
e caeJap4.Scaffold18213   462601 86 +   720316 I

a score=5835.000000
s ce10.chrX              2628137 111 + 17718866 TGTGTGTGTATGTCTAATTTGGGTCGGGGTTTGAGATTTAAAAGAAAAAAAAACAAAAACAAAGATACAAGTTG---GTAGAGGAAT-------AAGAAGATTTTAAAGTGTTTAGGAGAA
s caeRem4.Crem_Contig15   178227 102 -  1794024 GGAAAATGGGTTTCGTGTTTGTGT--GGGTTGGAAGTTGAA------GAGGCGCAAGAACAAAGTAACAAGTT----GGAGAAGAATCCGGAGAGAGatgaatt-------tttcgaagaa
i caeRem4.Crem_Contig15 C 0 I 225
s caeSp111.Scaffold582    212612  90 +   484378 -----------------TTTGTGT--GGGTTGGAAGttgaa-------agaaacaagaacaaAGTAACAAGTTGTGAGTGGAGGAATTTAgaactagaaaattt-----tgtttcgcaaaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3334083 153 -  4147112 I
e caeJap4.Scaffold18213   462601  86 +   720316 I
e cb4.chrX              17381628 225 - 21540570 I

a score=91.000000
s ce10.chrX              2628248 1 + 17718866 A
s caeSp111.Scaffold582    212702 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 82
e caePb3.Scfld02_0       3334083 153 -  4147112 I
e caeJap4.Scaffold18213   462601 86 +   720316 I
e cb4.chrX              17381628 225 - 21540570 I
e caeRem4.Crem_Contig15   178329 225 -  1794024 I

a score=0.000000
s ce10.chrX              2628249 1223 + 17718866  
e caePb3.Scfld02_0       3334083  153 -  4147112 I
e caeJap4.Scaffold18213   462601   86 +   720316 I
e cb4.chrX              17381628  225 - 21540570 I
e caeSp111.Scaffold582    212703   82 +   484378 I
e caeRem4.Crem_Contig15   178329  225 -  1794024 I

a score=-1434.000000
s ce10.chrX              2629472 61 + 17718866 AATTTTGGAAGATTCGTTTTTTTCACATGCAA-TTAATTTCTGCAACTTTTTATTTAAACTG
s cb4.chrX              17381853 53 - 21540570 AAGTTCAGAAGATTTGGGTTCTTAAGACCCGAGAAATATTCTAAGTTCTAGTT---------
i cb4.chrX              I 225 C 0
s caePb3.Scfld02_0       3334236 57 -  4147112 agtttttgaaaacgtaaTGTTTCTAGCC-----ATattttcttgctcattttttttcaacaa
i caePb3.Scfld02_0      I 153 C 0
e caeJap4.Scaffold18213   462601 86 +   720316 I
e caeSp111.Scaffold582    212703 82 +   484378 I
e caeRem4.Crem_Contig15   178329 225 -  1794024 I

a score=291.000000
s ce10.chrX              2629533 3 + 17718866 CTC
s caeJap4.Scaffold18213   462687 3 +   720316 CTC
i caeJap4.Scaffold18213 I 86 C 0
e caePb3.Scfld02_0       3334293 0 -  4147112 C
e cb4.chrX              17381906 0 - 21540570 C
e caeSp111.Scaffold582    212703 82 +   484378 I
e caeRem4.Crem_Contig15   178329 225 -  1794024 I

a score=195832.000000
s ce10.chrX              2629536 688 + 17718866  
s cb4.chrX              17381906 591 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   178554 658 -  1794024  
i caeRem4.Crem_Contig15 I 225 C 0
s caeSp111.Scaffold582    212785 677 +   484378  
i caeSp111.Scaffold582  I 82 I 168
s caePb3.Scfld02_0       3334293 668 -  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   462690 646 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-27765.000000
s ce10.chrX              2630224  87 + 17718866 ---TGTGCTAGAATATG--------------------------------TATGCTTTTGG------CTTTTGAATAA-------------------------GAGTT---TTACATTG------------------------------------------------------------------------GACGTTTTGTtt------------------------------tctggacattttaattgcccaatttt
s cb4.chrX              17382497 207 - 21540570 ---TTCGCTAGAATATG--------------------------------TATGCGC----------TTTTACATTTAGACTGAAAATAGTAGTGTTCAGTGTGGAGC---TGAAATTGATGAGAATGGAAGAAACGATATAAAATAGTGTTGATAAACATTCAAGCTACAGTATTATTCAATCggtaaacaaaaaattattcaaatcgACATTTAGTAATTTTTCAC---TATAttcaggagtctagagctcgacttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   179212  64 -  1794024 ---TTCGCTAGAATATG--------------------------------TATGCTCTCCG------TTTTACATTAA---------------------------acc---agaatttg------------------------------------------------------------------------aaaaagttcctC---------------------------------------------------ACCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3334962  97 -  4147112 ---CTAGCTAGAATGAG--------------------------------TATGCTTTCAGAtgggttttcaaaatga----------------------------------gccatCG------------------------------------------------------------------------AGAAAAGTGTTC--------------------TTCACGTTTAAGGGAAGAAGATAAATGAAATACTTg
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   463336 107 +   720316 AGgaccaataaaaaaagaacgatTACTTTTCATTCCTTCCGGTTAGTTTTAtgctctttg------ttttttttttc---------------------------attctgcGAACTAG------------------------------------------------------------------------AAAACCTTGGTC----------------------------------------------GTCTAGTTTT
i caeJap4.Scaffold18213 C 0 I 51
e caeSp111.Scaffold582    213462 168 +   484378 I

a score=-11677.000000
s ce10.chrX              2630311 60 + 17718866 ttgac----------------aaatttgaggaaa------ttcagggcaataccgcatggt-----tcggctcgtagaatgttgtcg
s cb4.chrX              17382704 86 - 21540570 caaattttcattctcAGTGCAAAAACAGGCAAAAAGGAGTGTtgctggaaaactaggaattttcaaaaaattcttagaatg-caaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   179276 41 -  1794024 CAAGGT---------------AGAATAGATGAGA-----TGTTAGAAGAGAACGAGCATTT--------------------------
i caeRem4.Crem_Contig15 C 0 I 9
s caePb3.Scfld02_0       3335059 52 -  4147112 gaaa-----------------acaggagaaaaaaagtagtttc----gAATGCCTTCATGT--------------GGAATGTCGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   463443 51 +   720316 I
e caeSp111.Scaffold582    213462 168 +   484378 I

a score=-1790.000000
s ce10.chrX              2630371 14 + 17718866 cacaagtaattaaa
s cb4.chrX              17382790 12 - 21540570 ttt--ttaatctag
i cb4.chrX              C 0 I 65
s caePb3.Scfld02_0       3335111 14 -  4147112 TTTAGTCAACCTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   463494 14 +   720316 CAAGAGtggctgaa
i caeJap4.Scaffold18213 I 51 I 12
e caeSp111.Scaffold582    213462 168 +   484378 I
e caeRem4.Crem_Contig15   179317  9 -  1794024 I

a score=-74422.000000
s ce10.chrX              2630385 129 + 17718866 ttaatattaaattacagaaattgtagaaa-------aaaatttttttttgaccgacttcaaa----------------aattatga-------gtt-----gcaaaaactg-----------------------aga---------------------------------------aattg------------------tcacttttt--------gacagtaa-------------ataaaaaa--ttccaattttttttaaaag--------------------------t
s cb4.chrX              17382867 237 - 21540570 tgaaagtGA----TCTAAAATGctggaaatcaactgaaaatttt---------gttttcgtaTATCTCATTGACGGGTAATGTTTT-------GTTTTGGCTTATCGTTTGGATTTCATGAATAACTTAGATTTCGGTAGACCTTTCTGTGCCAAAATCGATACTTGCTTGTTTTGAGCTTTATAGCTTTCCAAAGCtctaaaatatt--------tattgaaaaaaactaaacaactttaaaaa--tttttgttcatacaaaaaa--------------------------t
i cb4.chrX              I 65 C 0
s caeRem4.Crem_Contig15   179326 106 -  1794024 TGAAgg-----------------tggaaa-------aagttttt---------ggtctCGAA----------------AATGACCC-------GTT--------TCATTTG-----------------------CAGTAAA-----------------------------------AACTTCAT---------------TGGAATATa--------tgtctcaaaaaatt-------ttcaaaat--tcagtatt-------aaaa--------------------------t
i caeRem4.Crem_Contig15 I 9 I 125
s caeSp111.Scaffold582    213630 143 +   484378 ----------------------TTATGAAT------AAACTATG---------CAACTCAAA----------------TGTTCTCTTGGATCAATA-----ACAAAATTTA-----------------------CGA---------------------------------------AACTCAAT---------------TGAATTATCAAGACATTGatcttattttatt-------tt--------tcttgattctcaATATAAGGGGAACagttaaataaaaaacaaccat
i caeSp111.Scaffold582  I 168 C 0
s caePb3.Scfld02_0       3335125  89 -  4147112 ---------------------------------------------------------TCAAA----------------CATGCCTC-------ATG-----TCagtatttt-----------------------tag---------------------------------------aattttaa---------------tGA--TATCA-------GATTGGAATCCATT-------TTGAGAgctattttaatttttgaaagaag--------------------------t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   463520 109 +   720316 tcaattttaaattacATTCACTTTTGAAA-------AACATACG---------GAACgtatt----------------aattttct-------ttt--------tcatgaG-----------------------CAGTCAACGTTA------------------------------GAATTGGC---------------TAA--TATT--------TGATGCAAAA-----------ATGAAAGT------------------------------------------------
i caeJap4.Scaffold18213 I 12 C 0

a score=-14531.000000
s ce10.chrX              2630514 60 + 17718866 tttactatg-------------ataaatggccattt-------------------tggaaccatatgag---tagattc-gaacaat-ttccccact
s cb4.chrX              17383104 94 - 21540570 -ttgattttcaccaaaTACCGATGAATTTCACATTTCGAATCTTTAGTATCGATATGATCCCATaaaaaagtcaaatac-aaaaaat-ttaacgAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    213773 60 +   484378 ----atttt-------------ttaatttgacattt-------------------tcatttcctaaAAAACCTTGTCTA-CATCACTATTCACTACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3335214 42 -  4147112 ----ttttg-------------tgaaattg------------------------------------aagaagtagACAG-GAACATT-TTCACGATT
i caePb3.Scfld02_0      C 0 I 67
s caeJap4.Scaffold18213   463629 49 +   720316 ----TTCAG-------------GCAGATGTACATAT------------------------------ATACAGCAGATTCTTAAAAAC-CTGCCTACC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   179432 125 -  1794024 I

a score=-4792.000000
s ce10.chrX              2630574 27 + 17718866 ggtgctactcctttaaTA-GAAAAAGCT
s cb4.chrX              17383198 17 - 21540570 -----------TAAGatccgaaaaaaat
i cb4.chrX              C 0 I 51
s caeSp111.Scaffold582    213833  7 +   484378 -----------TGTGATA----------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   463678  6 +   720316 ----------ATGCGA------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3335256 67 -  4147112 I
e caeRem4.Crem_Contig15   179432 125 -  1794024 I

a score=0.000000
s ce10.chrX              2630601 39 + 17718866 CAAAGTTAAGAGCCAGGGAATTTCAAAATTTTATTCTCA
e caePb3.Scfld02_0       3335256 67 -  4147112 I
e caeJap4.Scaffold18213   463684  0 +   720316 C
e cb4.chrX              17383215 51 - 21540570 I
e caeSp111.Scaffold582    213840  0 +   484378 C
e caeRem4.Crem_Contig15   179432 125 -  1794024 I

a score=190524.000000
s ce10.chrX              2630640 190 + 17718866 ACAAACTTACTGTTGCCGGCGACGAAGCTTTGCACTTCTGGTGCGCCGTGGCTTCATCATGA--GTACCTAGGAATGGAAACGCATCCGCTAC--------------GCGGACAACTGCCAATATTTAGTGGTGGAGTCGAGTGTGCCGCAGGCGTGTTTGCCCTTGAGCCCGCCCACTGCAGAGTAGGC----ACT---GCCCAAACAACT-T-
s cb4.chrX              17383266 211 - 21540570 ACCAACTTACTGTTGACGTCGACGAAGCTTTGCACTTCGGGTCCGACGTGGCTTCATCATGAAGACACCTAGAAATGGAAACGCATCCGCGAAGAGAGCCCTGTCTCGCGGACAACTGCCAATATTCAGT-GTGGAGTCGAGTGTGCCGCAGGCGTGTTTGCCCTTCGGCCCGCCCACCGGAGAGGAGACCGCGACTCAAGCCCAAACAACT---
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig15   179557 186 -  1794024 ACAGACTTACTGTTGGCGTCGACGAAGTTTTGCACTTCGCGTTCGACGTGGCTTCATCATGA--TCACCTAGAAATGGAAACGCATCCGCGGA--------------GCGGACGACTGCCAATATTCAGT-GTGGAGTCGA--GTGCCGCAGGCGTGTTTGCCTTTGAGCCCGCCCACTGCAGAGTAGGC----ACT---GCCCAAACAACT---
i caeRem4.Crem_Contig15 I 125 C 0
s caeSp111.Scaffold582    213840 182 +   484378 ----ACTTACTGTTGACGTCGACGAAGTTTTGCACTTCGTGTTCGACGTGGCTTGATCATGA--GCACCTAGAAATGGAAACGCATCCGCAGT--------------GCGGACGACTGCCAATATTCAGT-GTGGAGTCGA--GTGCCGCAGGCGTGTTTGCCCTTGAGCCCGCCCACAGCAGAGAAGGC----AGT---GCCCAAACAACT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3335323 187 -  4147112 ACCGACTTACTGTTGACGCCGACGAAGTTTTGCACTTCGTGTCCGACGTGGCCTGTTCATGA--GCACCTAGAAATGGAAACGCATCCACAGC--------------ACGGACAACTGCCAATATTCAGT-GTGGAGTCGA--GTGCCGCAGGCGTGTTTGCCCTTGAGCCCGCCCACTGCAGAGTAGGC----AGT---CCCCAAACAACTT--
i caePb3.Scfld02_0      I 67 I 26
s caeJap4.Scaffold18213   463684 184 +   720316 ---AACTTACTGTTGGCGACGACGAAGTTTTGCACTTCTACTGCGACGTGGCTTCATCATGA--CGCGCTAGCAATGGATACGCATCCGCAGC--------------GTTGACAACTGCCAATATTCAAT-GTGGAGTCGA--GTGCCGCAGGCGTGTTTGCCCTCGAGCCCGCCCACTGCAGAGCAGAC----ACT---GCCCAAAcaact--t
i caeJap4.Scaffold18213 C 0 C 0

a score=1721.000000
s ce10.chrX              2630830 38 + 17718866 --TTCAGA---CGCCC-----------------CAACAGAGCAACT---TTCAGCT-------GGTTTAC
s cb4.chrX              17383477 48 - 21540570 --TTCAGAAGGCGCTC-----------------CAAAtaagcaatt---ttcagctgcttcggagttttt
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   179743 37 -  1794024 --TTCAGA---CACCC--------------------AGAAACTACT---TTCAGCTGC-----AGTTTTT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    214022 36 +   484378 --TTCAGA---CGACC--------------------AGAAGCAACT---TTCAGCTGCT----GGTTT--
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   463868 60 +   720316 tttccagc---cacgcGCAGAATTAAAGACAGAAACAGAAACAGATCTGTTTGGCT-------AATCACT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3335510 26 -  4147112 I

a score=-18551.000000
s ce10.chrX              2630868  85 + 17718866 TCTGTATGATATCTagacaaaaaaggaatagac------aatatta--------------gaaaagatattcgaaacaagaaaacgagaagaaaaaaaa------------gaaaaa
s cb4.chrX              17383531  57 - 21540570 cttctatGATACCATA-------------------------TATCC---------------AGAAAATTATCGGA--------------AGACAAAATT------ACTCGGGAGAGA
i cb4.chrX              I 6 I 4
s caeRem4.Crem_Contig15   179781  55 -  1794024 ----TATGATATCGT----------------------------------------------GACGAATTATCAGAATGAT------GAGAGACAAAAAT------ACGCCATAAAAG
i caeRem4.Crem_Contig15 I 1 I 20
s caeSp111.Scaffold582    214058  66 +   484378 TCTGTATGATATCTCG---------------------------------------------GGCAAATTAGCGAGACAAT------GGGACAACGAAATTTCAGAGCTCCATCGAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3335536  72 -  4147112 TCGGTATGATATCTGA---------------------------------------------CGCAAATTATCACGCCGATTTTTGGAGAACACAAAGagttagaaatttcagaaaaa
i caePb3.Scfld02_0      I 26 I 68
s caeJap4.Scaffold18213   463928 110 +   720316 TCCGAataaaaagagaagaataatgaaaataacgaaatgAGTATTCACACTAGAATTCCGGGACAAATT-TCGGATCAAAGGATCTCGGTGaagggaaa------accacgaaaata
i caeJap4.Scaffold18213 C 0 C 0

a score=-4688.000000
s ce10.chrX              2630953 35 + 17718866 gaa-gaAGTGTATATTTAAAGC----TTCAAATGAGCCAT
s cb4.chrX              17383592 22 - 21540570 TCA-GAAGT-----------------TCCGAATGCGTCAT
i cb4.chrX              I 4 I 31
s caeRem4.Crem_Contig15   179856 36 -  1794024 GCA-GAAATATGTCT-GCAAGC--CCTCCAGATGAGCCAC
i caeRem4.Crem_Contig15 I 20 I 9
s caeSp111.Scaffold582    214124 32 +   484378 -CACGAAATGCGTATCACAAGT--TTTCAAACTGC-----
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   464038 34 +   720316 gGA-AAAGTGAATGTCTCAAAACACTTCTAGCCGC-----
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3335608 68 -  4147112 I

a score=-221.000000
s ce10.chrX              2630988 6 + 17718866 CTGAGG
s caeJap4.Scaffold18213   464072 6 +   720316 TCGGTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3335608 68 -  4147112 I
e cb4.chrX              17383614 31 - 21540570 I
e caeSp111.Scaffold582    214156 0 +   484378 C
e caeRem4.Crem_Contig15   179892 9 -  1794024 I

a score=606.000000
s ce10.chrX              2630994 17 + 17718866 GTCCAGATGAGCCGAGC
s cb4.chrX              17383645 17 - 21540570 TTCCAGATGAGACACCG
i cb4.chrX              I 31 I 12
s caeSp111.Scaffold582    214156 16 +   484378 -TTCAGCTGAGCTACTA
i caeSp111.Scaffold582  C 0 I 15
s caePb3.Scfld02_0       3335676 17 -  4147112 CTCCAGATGCGACACGA
i caePb3.Scfld02_0      I 68 I 16
s caeJap4.Scaffold18213   464078  3 +   720316 -TTC-------------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   179892  9 -  1794024 I

a score=50798.000000
s ce10.chrX              2631011 98 + 17718866 TCCACTTCAAAACATC----GTCTAATTAGT--TGTCTCGCCTTCCAAAGAAACGGCAAGGCCTATTGTGCAGTCATGCAAGTAATTAAGGAATGAAAATCTTT
s cb4.chrX              17383674 89 - 21540570 TCGGTTTCAAAACATTGGGGGCCTAATTAGCTGTGTCTCATCTC-----TTCACGA----------TGGGCGGTCACGCGTGTAATTAACAAGGAcgaattcct
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig15   179901 87 -  1794024 TTCGCTTCAAAACATC----GCCTAATTAGT--TGTCTCGCCTC-GAAAGACACAA----------TGGGCGGTCACGCGTGTAATTAAGAAGGACAAATAGTT
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582    214187 86 +   484378 cccGCTTCAAAACATC----GCCTAATTAGT--TGTCTCGCTTC-CAAATACACAG----------TGTGCGGTCATGTGTGTAATTAAAGAAcact-attttc
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3335709 87 -  4147112 cttgtttcaaaacatc----gaCTAATTAGT--TGTCTCGCCTT-CAACGATACAA----------TGTGCGGTCATGAGTATAATTAAGAAGGACGAATAgtc
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18213   464081 80 +   720316 ------TCAAAACAT-----GGCTAATTAGT--TGCCGCGTCGT-CCAAGACGAGA----------TGTGCGGGCACGCGTATAATTAGGAAGAACAAACATTT
i caeJap4.Scaffold18213 C 0 I 1559

a score=3683.000000
s ce10.chrX              2631109 6 + 17718866 TGTTTT
s cb4.chrX              17383763 6 - 21540570 tgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   179988 6 -  1794024 GGTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    214273 6 +   484378 agtttc
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3335796 6 -  4147112 tgtttt
i caePb3.Scfld02_0      C 0 I 102
e caeJap4.Scaffold18213   464161 1559 +   720316 I

a score=546.000000
s ce10.chrX              2631115 1 + 17718866 T
s cb4.chrX              17383769 1 - 21540570 t
i cb4.chrX              C 0 I 98
s caeRem4.Crem_Contig15   179994 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 I 111
s caeSp111.Scaffold582    214280 1 +   484378 t
i caeSp111.Scaffold582  I 1 C 0
e caePb3.Scfld02_0       3335802 102 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I

a score=487.000000
s ce10.chrX              2631116 135 + 17718866 TAGCATCTGCTGAAATTTTCGAAACACATATTTTACATAAAAGATAAATTAAATATTCAACAAAAAATGTGATGTCACCAAAAGTAAAGTAGCGTAGTCTCACGttaaattaat-aatattatttttttctaactt
s caeSp111.Scaffold582    214281 119 +   484378 cgatttcagaCGAGTTTCTGGAAGCAA------TGCAAAAATgcagaagga----------gaaaaaggaaatgatacagaaaatggaaatac-tCGTCTTTCTTTAGATTCATAAATATTCGTGTTTTCTGGATT
i caeSp111.Scaffold582  C 0 I 606
e caePb3.Scfld02_0       3335802 102 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17383770  98 - 21540570 I
e caeRem4.Crem_Contig15   179995 111 -  1794024 I

a score=0.000000
s ce10.chrX              2631251 674 + 17718866  
e caePb3.Scfld02_0       3335802 102 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17383770  98 - 21540570 I
e caeSp111.Scaffold582    214400 606 +   484378 I
e caeRem4.Crem_Contig15   179995 111 -  1794024 I

a score=-1083.000000
s ce10.chrX              2631925 214 + 17718866 ACTCATACATATCCGACGTG------TTTTT----GGCAAATTGTCAGTGGCATTCT-----------------TGTCTAACTCAGTTTGC-TACGCCTT-----TTCTAT----------AACACATCAACACTCAGGTCACAACTTTATTTTTTTACTTGG---------------TGTGAACAC---TGATATATTTTAATAA---CATAAA---CTATCC-GAAGAAAAACAACTGTTGAAAAAGGAGAAATAAATTTTAAAAAAATTGAGTCGTCAG----------------------------
s cb4.chrX              17383868 161 - 21540570 ATTCATAAATATT---cgtgttatttttttcttctagagaATTGTCAGTGGCATTCTTGTCG--------CGAGTGTCTAACTCAGTTTTC-AGcgcctt-----ttttct-----------gaaaata-acatcTCC----------------------------------------------CAC---TTCTGACCGATcc-aa---cagaaa----------aatgaacaa--------------------------------aaaagtcacttttttt----------------------cgt---
i cb4.chrX              I 98 C 0
s caeRem4.Crem_Contig15   180106 244 -  1794024 aTTCATAAATATT---CGtg------ttttctggaaagaaattgTCAATGGCATTCTTGTCGTCGAGAGCCTAATGTCTAACTCAGTTTTCtaacttctttcaaattttctcttttagtCTCAGACATC-ACACCCACG--------------------TTCG---------------tttgaacactttttctgGTAGTTTA-AA---TAGATATTTCTAGATGACTGAACAATGActttttaa-----------------tgagaaaaatttttagttcttAGAGATCATCAAAATATGGAACGTGAG
i caeRem4.Crem_Contig15 I 111 I 42
s caePb3.Scfld02_0       3335904 224 -  4147112 ATTCATAAATATT---CGTG------TTTTCT---AACAAATTGTCAATAGCATTCTTGTCGCTGAGAGCCTAGTGTCTAActcagttttcaaagctcTTTCAGCTTTTCA------GTCTCAGACATCGACACCCATGGAACccttttggtgttt---ttcgggAGAATCTCCTCTTTTAAGACAT---CTATGtcctttca-aaattcataattttctgtAC-GATGAACAG--------------------------------AAAAGTGAGTCACCAG----------------------------
i caePb3.Scfld02_0      I 102 I 2
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e caeSp111.Scaffold582    214400 606 +   484378 I

a score=-1991.000000
s ce10.chrX              2632139 42 + 17718866 TTCTAAGC-----------AATGGACCATGTTAGCTTCTCTCTCACACTCTCT--
s cb4.chrX              17384029 48 - 21540570 tccaaAATTCAGGACCACACAGAGtcaatttcaatatctt-------ctctcttc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3336130 24 -  4147112 TCTCAAAC-----------CAAAGTCAATTTcaac--------------------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e caeSp111.Scaffold582    214400 606 +   484378 I
e caeRem4.Crem_Contig15   180350 42 -  1794024 I

a score=40718.000000
s ce10.chrX              2632181 142 + 17718866 TTCTATTTTCGTTC--AGAAACTTGATA--TGG------TTC-GTGCCATCATCC----CGGTCACATCTGGTTCGTTCTTCGCAAACA---TAGTCAAATTTCATTCAAAAGTGTCAATGTGAGATATGTGGAAATCCGTCA----------------ACGACCGCCCACACGGA
s cb4.chrX              17384077 129 - 21540570 ttctatttttgttcctcGAAACCCGATAGTTG-------TGCGTCGCCATCA-------TGGTCACATCTGGTTCG---TTCCCAAACACACTAgtcaaatttcattcaaaagtGTCA---------ATGTGGAAATC---------------------TCGACCGCCTACACGGA
i cb4.chrX              C 0 I 2155
s caeRem4.Crem_Contig15   180392 152 -  1794024 ctctatttttgttc--gGAAACCCGATAGCTGGCATTTCTTCCGTGCCATCATCCTTGTTGGTCACATCTGGTTCG---TTCACAAACA---TAGTCAAATTTCATTCAGAAGTGTCAACTGGAG--ATGTCGAAACCCGG--------------GGATCCAAACGCCTACACGGA
i caeRem4.Crem_Contig15 I 42 C 0
s caePb3.Scfld02_0       3336154 164 -  4147112 -tctatttttgttt--ggaaaccCGATAGCTGGCATTTCTTC-GTGCCATCATCCCTGTTGGTCACATCTGGTTCG---TTCACAAACA---TAgtcaaatttcattcaaaagtgtCAATGTGAG--ATGTGGAAATCCGGCACACTTTCAATACCACCACCAACGCCTACACGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e caeSp111.Scaffold582    214400 606 +   484378 I

a score=4032.000000
s ce10.chrX              2632323 130 + 17718866 TATGACCGCATGAAAGGATAAT---GAAACGAAAGGAAATTAGTTTTTGGTATAACCATGTAGGTTGAAACTCATCTCCTCGCCGCACAC---AAAAC------ATTG------CGACGGATATTAAAC-TTTTAAGAGACGTCCGGCA
s caeRem4.Crem_Contig15   180544 118 -  1794024 TGTGACCCAA-GCTATGATAGCcaggaaa-ttgaaataat-agAATTT--CATAACC--------TAAATCTCATTT--------CACGC---AAAAC-TATGGGGTA------CTCCGGAtattaaactttttcagtgaCATCCGGTA
i caeRem4.Crem_Contig15 C 0 I 79
s caePb3.Scfld02_0       3336318 130 -  4147112 TATGAGCAACTGCTATCGTAACCAGGAAGCCTCGAGTAATGAGGTTTT--CATAACT--------GAAACCT-ATCT--------CACACTCTAAAGCACACAAAGTAAGTAGGCTCCGGAtattaaactttttcagtcaCATCCGGCA
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    214400 606 +   484378 I

a score=0.000000
s ce10.chrX              2632453 1005 + 17718866  
e caePb3.Scfld02_0       3336448   12 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    214400  606 +   484378 I
e caeRem4.Crem_Contig15   180662   79 -  1794024 I

a score=91.000000
s ce10.chrX              2633458 64 + 17718866 ttgagcaaattttgattcCTTCTTTAAATAGATTATGTATGTACAACACAAAAAAAGA----GATCAA
s caePb3.Scfld02_0       3336460 53 -  4147112 TTGGATAGGTTTCGATT--------AAATAATTTATGAGTG-------CAAAAAACTACtcgtttcct
i caePb3.Scfld02_0      I 12 I 5
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    214400 606 +   484378 I
e caeRem4.Crem_Contig15   180662 79 -  1794024 I

a score=28794.000000
s ce10.chrX              2633522 105 + 17718866 --CCTTTTTTCTATCATTATTCAAAATGCAACTTCAATGCAAGCCAAGTAATAACGTCACAA---AAACACTCTATTGAAAATTAACCGAGTGAATTATGTGTCTGAACT
s caeRem4.Crem_Contig15   180741  92 -  1794024 cttttttttcatcttcttttccaaaatttaatttccgtATAAAGCAAGTGAGAGCGTCATAG-------ACCC-----------AATTGAGTGAATTATATGTCTGAACT
i caeRem4.Crem_Contig15 I 79 I 475
s caeSp111.Scaffold582    215006 108 +   484378 --ccttcttcatcttcctaTCCGAAATGTAATTTTCAAGTGAGGCAAGTGAAAGCGTCACACGCTCCATACCCAATTGACATCGAATTGAGTGAATTATGTGTCTGAACT
i caeSp111.Scaffold582  I 606 I 520
s caePb3.Scfld02_0       3336518 101 -  4147112 --tttccttcattttcctaTCCAAAATGCAATTTCCATGTGAGGCAAGTGAAAGCGTCACAC-------ACCCAATTTCCATCGAATTGAGTGAATTATGTGTCTGAACT
i caePb3.Scfld02_0      I 5 I 748
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I

a score=0.000000
s ce10.chrX              2633627 6001 + 17718866  
e caePb3.Scfld02_0       3336619  748 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    215114  520 +   484378 I
e caeRem4.Crem_Contig15   180833  475 -  1794024 I

a score=555.000000
s ce10.chrX              2639628 21 + 17718866 CTGAACTACTCTCAAAGCGTA
s caeRem4.Crem_Contig15   181308 20 -  1794024 CTGAACT-CTTGCGGTGCGTG
i caeRem4.Crem_Contig15 I 475 C 0
e caePb3.Scfld02_0       3336619 748 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    215114 520 +   484378 I

a score=-869.000000
s ce10.chrX              2639649 18 + 17718866 TTATGTATCTATC--TATTC---
s caeRem4.Crem_Contig15   181328 23 -  1794024 CTACTTGACTAAAATTGTTCCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3337367 18 -  4147112 ----TTCTCTATCGTTGTTCTT-
i caePb3.Scfld02_0      I 748 C 0
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    215114 520 +   484378 I

a score=28978.000000
s ce10.chrX              2639667 65 + 17718866 CAGCGGGCATCGTTTCCTGAACCTTCCTGCGATTATAGTGGCGTCATATCAAAACTACGCCTCCG
s caeRem4.Crem_Contig15   181351 65 -  1794024 CGGCAAGCATCGTTTCCCGAACCTTCCTGTCATTATAATGGCGTCATATCAGGACAACGCCTCCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    215634 65 +   484378 CGGCGAGAATCGTTTCCTAGACCTTCCTGTCATTATAATGGCGTCATATCAGAACTACGCCTCCG
i caeSp111.Scaffold582  I 520 I 203
s caePb3.Scfld02_0       3337385 65 -  4147112 CGACAAGTCTCATTTCCTGAACCTTCCTGCCATTATAATGGCGTCATATCAGAAATACGCCTCCG
i caePb3.Scfld02_0      C 0 I 495
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I

a score=-1601.000000
s ce10.chrX              2639732 359 + 17718866 TGCTAGCCACCATGTTGATTTGTGTCCGTTCAGATGAAAATGGGGTACACGGGAAAGAGTTTCATGATTGTTCTTAACGAATTGGGAGTACTTGTATAAAGAAGCCGTTTCTCGATTTTTCCTATTCTAGTTTAACGGCATAGGTACATACATAAATTATTTTTACAAGCAAGACAAATTTAACAAGACAGGTTTTTTTCATATTTAAAATAATAGCATTTCTTATTCAATTATTACTTTTTCAAAACATTCATCAGAATAAAGTAGACAATGTTTTGGTTTAATCAAAAATTATGATGTCATATTGATACAAATTAAAAACCAGGTACAGTTCGGAAATCACCCTAGTAAAACGAGTT
s caeRem4.Crem_Contig15   181416 234 -  1794024 GGTC--------------TTTGGG-------AAATGAAAAGGATATCCATA-----------------TATCCT---------GGG------TATATAAAgag---------taatttattttttgttggataAA--ACATAGGGATGCACAA-------TTTTACATGACTGAAATGCTTG------CAGGGATCTTACGGCTTAAGAG--ACAAC------TATCTAACTA---------------ACCCGtcggaaaaaattggatgaaattGGGG---GATCTAAGATTATGGTTTCATAATaataagaa----------------attcaaaaat------aataaaatcagTC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3337450 495 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e cb4.chrX              17384206 2155 - 21540570 I
e caeSp111.Scaffold582    215699 203 +   484378 I

a score=1418.000000
s ce10.chrX              2640091 47 + 17718866 AGATGAAATAAT-----AAATGCTTGTCaattattataaaaaaaattatatt
s cb4.chrX              17386361 52 - 21540570 agttggaaaaatgtttgaactgTTTCATAATTGTTGTAAAATGAATTCCATT
i cb4.chrX              I 2155 C 0
e caePb3.Scfld02_0       3337450 495 -  4147112 I
e caeJap4.Scaffold18213   464161 1559 +   720316 I
e caeSp111.Scaffold582    215699 203 +   484378 I
e caeRem4.Crem_Contig15   181650  0 -  1794024 C

a score=-4597.000000
s ce10.chrX              2640138  4 + 17718866 ttt-----------------C
s cb4.chrX              17386413 21 - 21540570 GGGGTTTCAGTTTAAATCCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   181650  1 -  1794024 --------------------A
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   465720  4 +   720316 -----TTCA------------
i caeJap4.Scaffold18213 I 1559 C 0
e caePb3.Scfld02_0       3337450 495 -  4147112 I
e caeSp111.Scaffold582    215699 203 +   484378 I

a score=166575.000000
s ce10.chrX              2640142 244 + 17718866 AAACTTACTGTACAAATATGTCTCTTGGGTCGACTTGACTAATGGACAGTTCTCGAATAAACTGGTGTGCTTTATTTAATTGCCGTTCTGCCCAAGCTTGCGCACTTCGCACTTTTTCCACATGACCCGCCACAAATTTTTGTCCAACGGCAAATTTGTGACCGACCGCCGTTTCGGCAGACATTTTTGG---------------CTTACCCTGTATTTA-------------------------GAGAAATTGAGAAATGATATTAAGAACGAGTGAAAATTG-----
s cb4.chrX              17386434 261 - 21540570 AAACTTACTGTGCAAAAATGTCTTTCGGATCAGCCTGGCTGACCGACAGCTCTCGAATGAACTGATGAGCCTTATTAAACTGCTTTTCAGCCCAAGCTTGCGCGTTTCGCATTTTGTCCACGTGGCCCGTCATGAATTTCTGCCCAACGGCGAACTTGTGACCGACCACCGTTTCAACAGACATTCTTGG---------------CTTGCCctgtattttttaaagcttttagt-------ggaggagaaaaaaaggaatagaggcaagaaaaa-tggaaattg-----
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig15   181651 251 -  1794024 AAACTTACTGTGTGAAGATATCCCTCGGGTCAGACTGACTAACGGATAGTTCTCGTATGAACTGATGAGCTTTATTAAATTGTCGTTCTGCCCAGGCTTGCGCACTTCGCACTTTCTCCACATGGCCCGCCACAAATTTCTGTCCGACAGCGAATTTGTGACTGACCACTGTTTCGACAGACATT-TTGG---------------TTCACCCTGTATTTT-----GAGTATAtt-------gaaagaataagaaaaaaac---gacaaaaacgA--GGAAATGG-----
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    215902 247 +   484378 AAACTTACTGTGTGAATATATCCCGAGGATCGGTTTGGCTGACCGAAAGTTCTCGAATAAACTGATGTGCTCTATTGAACTGACGCTCTGCCCAAGCCTGCGCATTTCGCATTTTATCCACATGACCTGCCATTAATTTCTGTCCGACAGCAAGTTTGTGACCAACTACTGTTTCGACAGACATT-TTGG---------------CACTTTCTGCATTTTATAGATATAAGGTT-----------TAGTAAGTGagaaat--------aaatgg--aaaaatta-----
i caeSp111.Scaffold582  I 203 C 0
s caePb3.Scfld02_0       3337945 258 -  4147112 AAACTTACTGTGAAAAAATATCTCTGGGATCGGTTTGACTGACAGACAGTTCACGGATGAACTGATGTGCTTTATTGAACTGCCGTTCCGCCCATGCCTGAGCGTTCCGCACTTTTTCCATATGGCCTGCTACAAATCTCTGTCCAACAGCAAATTTATGGCCCACTACCGTTTCGACAGACATT-TTGA---------------CCCACTCTGCATTTTAGAAGCTTTggattattagaaaaaaaagtaagaggGAAAT--------AATCAA--TTGAATGG-----
i caePb3.Scfld02_0      I 495 C 0
s caeJap4.Scaffold18213   465724 271 +   720316 AAACTTACTGAAAGAAAATGTCCCTCGGATCGGTTTGGCTAACAGACAGTTCGCGAATAAACTGTTGCGCCCTATTTAACTGCCGTCCAGCCCATGCCTGCGCATTCCGCACTTTTTCCACGTGGCCAGCCACGAACTTTTGACCAACTGCTAGCCGCTGGCCAACAACAGCCTCGACGGACATT-TCGAGCTGAGCTCGAGGTTTTCTTCCTGCATTTTCGAACTTTTACACG---------------GAAAGAGAAATGGGAtgcaaaaaac--agaaataaatGTG
i caeJap4.Scaffold18213 C 0 C 0

a score=-2422.000000
s ce10.chrX              2640386 24 + 17718866 GAAT-CATTAGCATGGGGTGATAAT
s caeRem4.Crem_Contig15   181910 25 -  1794024 GAGTTTCTGGAAATAACTGGGTAAT
i caeRem4.Crem_Contig15 I 8 I 6
s caeSp111.Scaffold582    216149 25 +   484378 gaGCGTATGAGAAAATATCTATAAA
i caeSp111.Scaffold582  C 0 I 8
s caePb3.Scfld02_0       3338203 24 -  4147112 GAAT-TATAATGAATTATTGATGAC
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18213   465995 24 +   720316 GAAT-TCACAGGTTCAGATTGTAGT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17386695 19 - 21540570 I

a score=-9062.000000
s ce10.chrX              2640410 40 + 17718866 ---ATTGAAGAAAATAAATATGATATAAAGAATGATAAGAAGA---------
s cb4.chrX              17386714 33 - 21540570 ---ATGAGAAA-GAGGAACATGATAAAA-----GT-TATAAAA---------
i cb4.chrX              I 19 I 10
s caeRem4.Crem_Contig15   181941 34 -  1794024 ---acttgaag-aaaaaacatccTGAGA----TGG-TGAAAAC---------
i caeRem4.Crem_Contig15 I 6 I 11
s caeSp111.Scaffold582    216182 22 +   484378 ---GTTGCAAGTAAGTGA------------------TAGAAGA---------
i caeSp111.Scaffold582  I 8 I 3
s caePb3.Scfld02_0       3338239 36 -  4147112 ---ACTGGAACCAATCAACATAACAATA----TGTctagaaaa---------
i caePb3.Scfld02_0      I 12 I 210
s caeJap4.Scaffold18213   466019 47 +   720316 GGCGTTGGGAA-AAGGAAAATGAAGgaa----tgcaaagaaaaaaaaaaaga
i caeJap4.Scaffold18213 C 0 C 0

a score=-31671.000000
s ce10.chrX              2640450 102 + 17718866 ATGGTTCTTG---TGCATATTTTTGTGC---CAGGTATACTAAACAAGTACCG--AAAATTGTTGTTATTAATTTATTCATG------GTCATTAGAAAATAAGCATT----TGTTCT---------AA
s cb4.chrX              17386757  46 - 21540570 AAtactatt----tattttttttcatat-----------------------------------tgaaaataaataatag---------------------------------gattct-----------
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig15   181986  88 -  1794024 AAAATTATT----TGCGTTTTGTAATATACTACGTTGTATCAAAC--GCATTA--GGAACTAATCCAGGTATATAACAACTG------GTgat-------------------gtttct--------caa
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    216207  98 +   484378 Aacgtt---------cattttcagaaat-------tatagaaaac--aTAAAT--AGAAGTAAATTCAATAAACACTAGATT------ATGTT-----ATGACGGATTTGCAGTTCCTATTATGATCAA
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   466066  88 +   720316 ---------agaatgcatacatacatac-------------------atatctGCAAAAATGATGAAGTTAGTGACtttttttATCACGTGTGCGCAAAatgaatatt----attttt--------ta-
i caeJap4.Scaffold18213 C 0 I 99
e caePb3.Scfld02_0       3338275 210 -  4147112 I

a score=-11590.000000
s ce10.chrX              2640552 89 + 17718866 ATGAGTT--GTTCTTTTATAAAACAACTTTAAAATTTTTCATTAATAAGACTGAACCAAGTTCACGAGTTCACGATCTAAGACCAGCAAA----------A
s cb4.chrX              17386803 24 - 21540570 aaaatat---ttttttaa----------------------------------------------------------------------aaacccag----A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   182074 89 -  1794024 aaaagataaGTTTTTTAAT------------AGGTTCTGTATTCATCCAAATGCAACACACTTATGAGtaaagagaacaaaaaaaggaaaacacaGCGTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    216305 50 +   484378 CAGGGGt--gttttctatt------------atttt-------------------------------gcAGActgaaaaccaagaaaaaaatgc------a
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3338275 210 -  4147112 I
e caeJap4.Scaffold18213   466154 99 +   720316 I

a score=220.000000
s ce10.chrX              2640641 35 + 17718866 ATGCTCAAAAGAAAA-TGCTCA-TTTTTTGGAGCAAC
s cb4.chrX              17386827 36 - 21540570 AATGTCTAACGTGAAGCTAGAA-ACGTTTGGTGAATT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   182163 36 -  1794024 Aggttcaaacaaaaaacatgaa-actctttgagcatt
i caeRem4.Crem_Contig15 C 0 I 18
s caeSp111.Scaffold582    216355 36 +   484378 acGTTCCAGGGAAAAGCATGAA-ACTATTCAAGCATT
i caeSp111.Scaffold582  C 0 I 17
s caeJap4.Scaffold18213   466253 37 +   720316 AAGCTTAAGAAAACGgggaaaattcgatttttgtgtt
i caeJap4.Scaffold18213 I 99 C 0
e caePb3.Scfld02_0       3338275 210 -  4147112 I

a score=37286.000000
s ce10.chrX              2640676 120 + 17718866 GAGAAGGCGGAAAGAATTTAGT-CTGAACAACCAAATTCACAAAATCTTATTT----GT-GTGTTTTGTCTCGGCCTATTGCTAGCTATAACTCTATTTGGAAAC-TTTCTA-GAGCAGATAATGCAC-----------------------
s cb4.chrX              17386866  91 - 21540570 agcagaaaaaa--gaatttag----ga---------------aaatttgATTT----GC-CTGTTTTGTCTTGGCCTATTGCTTGCAATAACtcgatttggaaaa-tttttctgaatg---------------------------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   182217 111 -  1794024 agcaaaaagag--aaaaatagc-cTGAACAACTAAATTTACCAGATCTGATTT----GC-GTGTTTTGTCTTGGCCTATTGCTCGCTATAACTcgatttggaaac-ttttta-gAACGAAT------------------------------
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    216408 119 +   484378 GGAAAAGCATG-AAAAAATAGCAGTGAACAAcgaaatttctcaaatcttATTT----GC-CTGTTTTGTCTTGGCCTATTGCTCACTATAACTTGATTTGGAAAC-TTTTTG-GAGCAAATAATGGA------------------------
i caeSp111.Scaffold582  I 17 C 0
s caePb3.Scfld02_0       3338485 120 -  4147112 AAGAAAGCGAG--AAAAGTAGC-TTGAACCACCGATTTCttcaaatctcattt----tctctgttttgtcTTGGCCTATTGCTCACTATAACTcaatttggaaactttttta-gaaCAAATAATGGAT-----------------------
i caePb3.Scfld02_0      I 210 I 30
s caeJap4.Scaffold18213   466290 133 +   720316 ----gggaaaa--aaaactagt-----aAAGTAAACTTATCCAAATTCTATTTCTGcgt-attttttgtctca--caat--CATGCTAAAAATTGATTTCGAAAC-GTTTGT-GAACCACAAACTAATATTAAGGGGAAAGCTGAAGAAAC
i caeJap4.Scaffold18213 C 0 C 0

a score=-8109.000000
s ce10.chrX              2640796 34 + 17718866 AAAAAAGCAACTCTGA-CTTTATTGCTTCTCATGG-----------
s cb4.chrX              17386957 25 - 21540570 -gGAGAGCAGTATGCG-TCTTATTGCc-------------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   182328 33 -  1794024 -AATGGGCCGCATGGC-TTTTTCTTCTGTCAAATA-----------
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    216527 27 +   484378 --------AATATGGCATTTCTCTTTTGCTGTGtc-----------
i caeSp111.Scaffold582  C 0 I 3
s caeJap4.Scaffold18213   466423 45 +   720316 AGATGAGCATATcgca-tttcttttttctttccaacacacacaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3338605 30 -  4147112 I

a score=-9524.000000
s ce10.chrX              2640830 419 + 17718866  
s cb4.chrX              17386985 438 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   182365 351 -  1794024  
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    216557 415 +   484378  
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3338635 489 -  4147112  
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18213   466468 427 +   720316  
i caeJap4.Scaffold18213 C 0 I 1196

a score=-50611.000000
s ce10.chrX              2641249 176 + 17718866 TAAAATTTTCAAAATAGAATGTGACATAGTTGATCATGATTTCGAAATAGA-----------------------GATAATATTTCATA--AGTTTGGATGTG---ACAAGGCTTATGAAATTTAGGAGGAATATATATATATATATGGTTGAATGA--------------------AGATAAAA--ATTC--TGAATAAAATACTGGCAAGAATT---AATAT--------AAGTAATA----
s cb4.chrX              17387423 160 - 21540570 GCGAAGTTCAAGGAAAAATTGTTCGAAGTT--------------GTGTTCT-----------------------AACAAGGGAGCCTCGTGACCcagattttgacaaaaaatttaaaaaa--taggtggaacattttttaaaaaattttcgaataa------------------------------atct--CTCATCCAACAATgtggagaaattcaaaaat--------aatttaca----
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15   182716 136 -  1794024 ACTGTTTCCGATaaaaaacggttaggaaaa--------------acatgaa-----------------------aataaaatag------agctca---------aaaaaactgaaaaac--tcag------ATACTTTGAAACTCGGTGAGATAA--------------------AAATAGGATTATTT--CTcaagaaacaat-------------aaaat--------gagtcaaa----
i caeRem4.Crem_Contig15 C 0 I 60
s caeSp111.Scaffold582    216972 103 +   484378 ------------------ctgctCCAAATTTGTCTAACTTGCTCACGCTCT-----------------------GATGAATTTT------G---------TGctta--aaattaataa---------------------atgaaatttttgaatgg------------------------------gttttatt--------------------tttaagggc--------gcatgaaaa---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3339124 225 -  4147112 TTCATAATAAATAAGATACCGTAGGatatttattttcgtttcaaaCACTATTCTTTCGTAGAGAATGGGTCGAGGACTAATTCT------AGATCAGAATTGCATACCAGGTCAATGAAc--tcgtttcaaaatg----atgaaatattCTGATGTAACCTTTCACAATTATctagaaataaaattgttcaattcaaGTTTCAAA------CAGCTTAATGACTGGATTCGACAGGAAACGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=-4134.000000
s ce10.chrX              2641425 16 + 17718866 -----TTGGGAGTATGCCT--TT
s cb4.chrX              17387587 16 - 21540570 -----tcgagaaaatgtccga--
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold582    217075  6 +   484378 ------aaagaa-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3339349 19 -  4147112 TTTTTTAGAGCAGGTGTTC----
i caePb3.Scfld02_0      C 0 I 66
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e caeRem4.Crem_Contig15   182852 60 -  1794024 I

a score=-3984.000000
s ce10.chrX              2641441 54 + 17718866 TTTGCTACTTTTTTTTCAAATTGTTTGTAGAGTGCCAGGATTTCAATACTTTTG---
s cb4.chrX              17387603 32 - 21540570 -----------attattaaatttatt-----------gaattttaagT---ATAACA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    217081 37 +   484378 ---acgagtTGTTTGTAGAATATgt--------------atctcaaaa-ttttga--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3339368 66 -  4147112 I
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e caeRem4.Crem_Contig15   182852 60 -  1794024 I

a score=-63570.000000
s ce10.chrX              2641495 367 + 17718866 -----------------------------GATGAATTTTGTAATAATGA-----AATTTTGAAAATTTCCACATTT--------TTCCATttg---attgaaatacatttaaagccgatagataaccaatttttc----ttttttcggtcactctgaaatgtacct-------------caatcaatgaaat--ta-----tgtgttaatcaccaatTTAAAAAATTCTACTAAGTT----AAAGA--AAAAGTATCTAGAT----AA----ACTTGTTTTCAG----ATGTGC--AACACAATAATGTATTCAGTAGTTGTCTGAAATG---------TTCGCGTGTAATTTGAAACGCTTGGGAAAA-GCCGAAACAATACACTTCCATCTCATTGTTTGCGTTTTGTTCTGAGAAAAGAGATGTTC---AGTCTGGCAAAAAATTTCAAATGTTAGAGAACAAGAA-------------------------------
s cb4.chrX              17387635 316 - 21540570 -----------------------------GAACAAGTTTTAAGTCATGA-----AGTT------ATTTTTGGTACTTAAACTCGTATATCTTG---GCTGAAACTCG---------------CAAGCAgcctctg----aaatttc---------caaaaatgtct------aGACATTCTATTCGTAACC---TACCCTGAATTT--TCCACCAGAATCTA-GACAACAGAATGCT----ag-----agaatttcataattttgaaagt--atTTCATCACAA--TCCTGGTCCAGA-------GCGTATTTTGTAGTTTCCTC------------------TTTGTAATTTGAAACGCTCTGGGAAACAATGAAAC----------GA------CATTTTGGCTCTTTTGC---TCcaaaagtgttc-----------aaaaaata----tatcaaaagaGAATGAAAA-----------------------------
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig15   182912 267 -  1794024 -----------------------------------tttttgaataaacg-----GAGT------ATTTAT--------------TACGATATT---GCTAAAACAGg------------------ggattttttgttttaaatttcag-----taCAAAGATG----------------------GTGgac---ta----------------------------------------------------aaaattttaaaact----aagTACATTTCCTC-CAA----CTGACC--AA-------GCGTATTTCGTAGTTTCCTCAATATG--------Ttcacttgaaatttgaaacgttttgtgaaa-actgaaacaatgC--CCAga------gatttcatttctttcttatGTTGAGAAACGTTC--ACGTCTAGGaacgagaa----tttccaaaaatcactGAAG-----------------------------
i caeRem4.Crem_Contig15 I 60 I 15
s caeSp111.Scaffold582    217118 339 +   484378 -----gttc------------agattgat---------tgaaaatgtaa-----aatt------attcaaagtAAA--------CTCGCCTTG---ACTCTGATAAT------------------TTCACGTTTG-----ACTT---------TGCAAAACAACCTGTTTTTCTGTGGTAGA--TGTGAGA---TA-----AATTTAATGTTTTgag------gatttcaaaatatttatcaATGCTTAAAATGACATAAT-----------AC-------TAA----ATAACA--AA-------ACGTATTTCGTAGT--------------------TTCGCTTGTAATTTGAAACGCTATGGGAAA-ACGGAAACAATGCACTTGGA-----CTgctttgtttctttttcttgttagaAGACGTTC---AGTCTGAGAACAactc---aattccaaaaatcacaaaagtCTAGGAA--CAGTAGAAGAGATGAAGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3339434 412 -  4147112 TATGAATTCCAACATGGAACAAAACTGCTGAAC--TTATGAAAACTTGAACAACAATT------ATTTGAGTTATG--------TTCAATTAGGATATTCTAACACT------------------GAGGTTTTTG-----GGTTTCAG-----TGGACAACTACTCGTTACAAAGAGAccaaattatgaaattcta-----atttttatgaACTAGGTTCTGTTATTTTACAGtctt----agtgaaaaaaaaaacagagcc----GATG--AC-------TAGTATCCTGACA--AATAC--TTACGTATTTCGTagttttccaacaaaaaaaaagagttcgcATGTAATTTGAAACGTT-TGGGAAA-AGTAGAATAATTCATTTCGA------TGCTTTG----TTTTCTATGTTTGAAAACGTTCACAATACTAGGAACAACTT----ATTCCAGAAATCGCTCATGTCTAGAAAACTACCGGAAACAGTGAG--A
i caePb3.Scfld02_0      I 66 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=-6778.000000
s ce10.chrX              2641862 52 + 17718866 ----AACTAAAC-TTTATAATTATT----AAACAATACTGC----------AA------CCTGAAA------------ATTTTGAGATC
s caeRem4.Crem_Contig15   183194 72 -  1794024 --ATATCCGAGCGTTGAGACTGAATCGACggatattttttc----ttt-----------tttgaaagagtTCGTAAAGGTTTCGAGACG
i caeRem4.Crem_Contig15 I 15 C 0
s caeSp111.Scaffold582    217457 83 +   484378 GAATATCTTATC-TAAAGATTAAAT----AGAATTCATTTC-CAGTTTAACAAAGGAATTATGAATGAGATTGGGAATGCTTTgatata
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3339846 77 -  4147112 AAGTACGTTGTT-CAGAGATTAACT----AGGAATTATTGCTCAGTCTCAAGA------CTTGAATGCCA-TGGATATacttgaaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17387951 49 - 21540570 I

a score=-1141.000000
s ce10.chrX              2641914 132 + 17718866 ----------------------------------AATTTCAAA------------------------AAAATATTCGATGGGA-A--TTCAAAGACGCTATGAGAAA-----GTG------CACATCAAGG-AGACTCAATTATTTACTGAAAAAGGGTGACCAAA--GTCATTATTCTGCGAGAAAAAAAAAA-----CAAAAAAGCGACG-----------
s cb4.chrX              17388000 127 - 21540570 ----------------------------------aagttcgaa------------------------aaaaattggggtggga-attttcaaaaa----------aa-----gag------aactctCGAC-AAAGACTCACA---ACTGTCAGGCGGTG---AAA--CTCATTATTTCAAGGAGAAGGCTagt-----aagaaaaaaggaaaaagagcag--
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig15   183266 149 -  1794024 ----------------------------------AAAGTGGAA------------------------TTGAGACGGCGAgtga-aatttcatgaattctgT--GTGA-----AAGTCTGCTAGCTTTTGAG-AAAGTCATTCATTTACTGCCAAAGGCTGACCAAA--GTCATTATTctatggaaaaaaagaga-----agaaaaaacaacaaaaaagcgGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    217540 169 +   484378 gtttttaaaa-tgaat-------------tttttgaatctgaataaactaaaataaaatt-------gaaattcagacTGCGA-AATTCCATGAG----------AAAGTGGGAG------AACTTCTGAGAAAAGTCATTAATTTACTGCCAAATGCCAACCAAAACGTCGTTATTCAAgggaagaaaatcga-----aaagaaagcTGCG-----------
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3339923 187 -  4147112 attttgaaaactgaatgaaattgagaaaatcatgGAAGTGGAGCAGACGGtggaaatattttggaaagaaattcA---TGGGAGAATTTCAAGAG----------AA---TGGAG------AACTTCTGAG-AAAGTCATTCATTAACTCGCAAAGGCTGGCCAAA--GTCATTATTCTAAGGAGAAGAAATaacgacgaaaaaaaacgGCG-----------
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=-2219.000000
s ce10.chrX              2642046 10 + 17718866 TCTT--------GCGAGG
s caeRem4.Crem_Contig15   183415  4 -  1794024 CCCT--------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    217712 12 +   484378 CCCAATTCACGG------
i caeSp111.Scaffold582  I 3 I 7
e caePb3.Scfld02_0       3340110 22 -  4147112 I
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388127  0 - 21540570 C

a score=304.000000
s ce10.chrX              2642056 57 + 17718866 CAACCCTTGTGTG---------------------AAAAGTATTCATT-TAGCAGTGCGACTGCTCTTTTCAGACGGTTG----------------------------
s cb4.chrX              17388127 75 - 21540570 ----ctgagaaagaaaaaaagaaggcgaaagcgaaaaaatgatcGTCGTGACGATACGAATGCTCCT-------CATTGccttttg---------------------
i cb4.chrX              C 0 I 69
s caeRem4.Crem_Contig15   183419 58 -  1794024 ----CTTTGTGTGAGAAAAGGAAAGC-------------TGATCATT-TGGCGATACGAatgctct----------tttctttttg---------------------
i caeRem4.Crem_Contig15 C 0 I 26
s caeSp111.Scaffold582    217731 91 +   484378 CAACCGATGCGAG---AAAACAAAGC--------AAAAGTGATCATT-TGACGATACGGAggctctttt----ttgttttgtttcatgaAGGTTTGAAAAGCTCCCG
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3340132 87 -  4147112 CAACCGatgtgag---aaaagaaaac-----aaaaaaagcgatCATC-TGACGATACGactgctctt---------ttttgtttcgtaaagcttcaaaaaagg--CG
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=9883.000000
s ce10.chrX              2642113 61 + 17718866 AAACTATGCATTCGTGGACTTGTCGCCCTGGAGAATTATTGTAAAC-AAGCTCAACAAACGA----
s caeRem4.Crem_Contig15   183503 66 -  1794024 AAACTAAGTCGACGTTGTCTTGTATCCGTGGAGAATCTCCACCAACAAAGCCAGCCACACATTCAG
i caeRem4.Crem_Contig15 I 26 C 0
s caeSp111.Scaffold582    217822 65 +   484378 AAATTTAGTCAACGTCGTCTAGTATCCGTGGAGAATATTCACCAAC-AAACGTGTCATCCATTCAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340219 66 -  4147112 AAACTCAGCCGAAGCTCTCTTGTAACCGTGGTGAATCTTCACCAACAAAAAGTGTCTTCCATTCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388202 69 - 21540570 I

a score=18289.000000
s ce10.chrX              2642174 54 + 17718866 CACTAAGCAACCG--GTGACACTTTTGAC--------GGGATTTTATGAAATTTTCATAAAGTC
s cb4.chrX              17388271 56 - 21540570 CACCAAGCAACGG--GTGGCATTTCTCAC------GGCGTTTCGCATGAAATATGCATAGAGAC
i cb4.chrX              I 69 I 29
s caeRem4.Crem_Contig15   183569 55 -  1794024 TTCTAGGCAAC-G--GTGACATTTTCAAC------ggcaaattttatgaaatatgCATCGCGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    217887 62 +   484378 TTCTAGGCAAC-GGTGTGACATTTTCGACACGGGAAAGGACTTTTATGAAATATGCATCGTGT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340285 56 -  4147112 TTCTAGGCAAC-G--GTGACATTTTTGAC----GGGacgttttttatgaaatatgCATCGCGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=-1920.000000
s ce10.chrX              2642228 30 + 17718866 ----CGCCGGTTTG-CGGTGCGTGACTCGAAA---------CAT
s caeRem4.Crem_Contig15   183624 28 -  1794024 -TCAAAGAGTTTGG-TGTAG----AACCGAAA---------CA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    217949 25 +   484378 TTCGTAATGGTTGG-TGTTG--------GAAA---------CA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340341 35 -  4147112 TTCGAAATGGTTGGATGTTG--------GGAAAGAGAAAACCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388327 29 - 21540570 I

a score=46274.000000
s ce10.chrX              2642258 304 + 17718866 GGTGTCATAGAACATAAAACAAAAC------AACGTTGTTTCAC----GGCGCTTTTTGCTCTTTTTTTCAAAGCGCAAAATAAAGGAGCAAAATAAGAAAAATTTGGATGAAAAACCGGGCTCAAGGAAAAAAAATGC--------GATACCGAATGT----AATAGACAAAAAATAAAAGACGGCAGAAGCCGAATGCAGAGTAAAAAGTAAAAAAACTAGAGGCGGAAGATGTGAGGGAGGAA---AACA---GAGCTAGAAGAAAAAAAAATAGAGTATTGTTTTCTCAATAATAGGCTTT---CTTAACTT-G-CGCATGATGCTCTTTGAT
s cb4.chrX              17388356 265 - 21540570 ggtgtc-taaaaaa-ccaagaaactataaaacaaaacgtgtcacgc--gtcgctctttt---gaaaaggagaaa---------aaagag-aaaagaatgaaatatgggatta---------cgc----agaaaaaatgcctcatgtagaaatgaaatCT----------Cg-aagagaaagg-----agaa---gaat---------ag---aaaagattggaacggcgaatctgcgagaaaaagaggaaaagaggaGGAAACGAGCAGAAGGAATAAAGTATTGTTTT----------GGCTTCTCTCTTAACTT-GCCGCATAATACGCTTTGAT
i cb4.chrX              I 29 I 22
s caeRem4.Crem_Contig15   183652 250 -  1794024 --CGTCATAAAACA-ACAACAGCCT------CTGTTTGTCTCACAA--GGCGCCCTTTG---TGATTTcccaag---------aaa---------aatgaaaaatgggataa---------ctc-----gaaaaaatgc--------gaTACGGAATGTATGTAATAGACG-AAAATAAAGG------GAA---GAACACA----CGAG---AAACGAACGAGAGGCGGAAAATGCGAGGGAGGAGGGAAA-----AAGCGTTGGGCAGAAAAAGT---GTATTGTTTTCTCAATAATAGGCTTC---CTTAACTTAGCCGCAT-----GCTTTGAT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    217974 253 +   484378 --Cgtcataaaaca-aaaaaag---------agacctCTGTCACAATGGGCATTCTT-------GTTTCccaag--------aaag---------aatgaaatatgGGATTA---------CTT-----GAAAAATTGC--------GGTACAGAATGTACGTAATAGATG-AAAATAAGGA--GATAGAAG-CGAACGCagagtgaga---aaaaaaatgagaggcGGAAGGCGTAAGGGAGAGG---AA-----AAGCGGCAAGCAAAAA-------GTATTGTTTTCACAATAATAGGCTTC---CTTAACTT-GCCGCATAATACGCTTTGAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340376 243 -  4147112 --CGTCATAAAACA-------------------ACTTGTCACACAATAGGCACCCTT-------GTTTCtcaag---------aag---------aatgaaatataGGATTA---------CTC-----AAAAGATTGC--------GATACAGAATATATGTAATAGACGAAAAATAGACG--GATAGAA--CGAACACAGAGTGGAA---AACGGAACGAGAAGCGGAAGATGTGAGGAAGGCG---AA-----AAGCGGCGAGGAAAAA-------GTattgttttctcaataataGGCTTC---CTTAACTT-GCCGCATAATACTCTGTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=-906.000000
s ce10.chrX              2642562 11 + 17718866 -AGCATCGTTTT
s caeRem4.Crem_Contig15   183903 11 -  1794024 -GGCATCGTGTT
i caeRem4.Crem_Contig15 I 1 I 108
s caeSp111.Scaffold582    218227  5 +   484378 GG-------AGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340619 12 -  4147112 GGCCATCATGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I

a score=-132.000000
s ce10.chrX              2642573  5 + 17718866 ATGTC--------
s caeSp111.Scaffold582    218232 13 +   484378 ATGTTCTTAAATC
i caeSp111.Scaffold582  C 0 I 53
s caePb3.Scfld02_0       3340631  5 -  4147112 ATGTT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I
e caeRem4.Crem_Contig15   183914 108 -  1794024 I

a score=219.000000
s ce10.chrX              2642578 6 + 17718866 CCTTAA
s caePb3.Scfld02_0       3340636 6 -  4147112 CTTAAA
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I
e caeSp111.Scaffold582    218245 53 +   484378 I
e caeRem4.Crem_Contig15   183914 108 -  1794024 I

a score=0.000000
s ce10.chrX              2642584 747 + 17718866  
e caePb3.Scfld02_0       3340642  44 -  4147112 I
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621  22 - 21540570 I
e caeSp111.Scaffold582    218245  53 +   484378 I
e caeRem4.Crem_Contig15   183914 108 -  1794024 I

a score=154.000000
s ce10.chrX              2643331 6 + 17718866 AGCAGA
s caePb3.Scfld02_0       3340686 6 -  4147112 AGCATC
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I
e caeSp111.Scaffold582    218245 53 +   484378 I
e caeRem4.Crem_Contig15   183914 108 -  1794024 I

a score=-809.000000
s ce10.chrX              2643337 11 + 17718866 -----TTGCACGCTAA
s caeSp111.Scaffold582    218298 10 +   484378 ttgcgtttta------
i caeSp111.Scaffold582  I 53 C 0
s caePb3.Scfld02_0       3340692 11 -  4147112 -----TTTTAAGCTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I
e caeRem4.Crem_Contig15   183914 108 -  1794024 I

a score=778.000000
s ce10.chrX              2643348 8 + 17718866 TCTTGTTT
s caeRem4.Crem_Contig15   184022 8 -  1794024 TCTTGTTG
i caeRem4.Crem_Contig15 I 108 I 5
s caeSp111.Scaffold582    218308 1 +   484378 -------t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340703 8 -  4147112 TCTCgctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I
e cb4.chrX              17388621 22 - 21540570 I

a score=10474.000000
s ce10.chrX              2643356 265 + 17718866 TCTGTTTTG-----------------------------TTTCATT-----TTTTATTCT--------GTTTCAGTCTATCT---ATTTTTATGTCACACTTCATTTCTAGGA-----ATAACTCGAAAAAAGCAACTGTGACGAAACAC-------ACACACACACACTATAATACTAAATAATGGGAAGCAATACTAATGCATTAACTAGAAAA-----AAAAAACTTGAGAAATGCTATGAAACTAACATTTT-CTTTTTTTGTTC------TCCCATTCTATTTTTTC---------AGTATTTTTTTCTCCCCT---------------------------AACACACATTGGATTCCGGGACCAT
s cb4.chrX              17388643 288 - 21540570 TCTGTTTTTTCTCATGTTGCGTATGTTGTCATCACCAGtctaattcaaaaactaatccTA-------TTCTTTTCCCAATTCCAATTCTtagg--------aatttctagaa---aaataacgCGAATG-------TGAAACGGCAAAAACAGCATACACA--------------------------AAACAGAATTAATGCATTGACAAGTA-------AAGGA----------------GATActaatgtttctttttttccgctCTTAACGCCGccgtctttttttctaaacccccccccccctcactCTCCCCTTTTTCCACCTCCTCTATGGAC------CACGCTTACAAGATTTCGGGGAC--
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   184035 244 -  1794024 tctcttttttctaat-----------------------tctcatT----AATTTACCCTA-------TTTTCTATTCAAC----attctcag------------tttcagaaaggaaaaaactctagaa-------aaatgtggaaaaa-------gcaca--------------------------aaaCAGAATTAATGCATTGACAAGTAAACCACGAAGGA----------------GATActaatgtttc-ttttttctgctc-caacatcgcc-----tttttct---------cccccttttttcttgcCTGGCTCCTCATAC----GGGACCCGACGCCTGCTTACTGGATTTTGGGGACAT
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    218309 230 +   484378 tctgttttt----atgtttc--tttt------------ttttgtt------ttttctct--------atttcagttcaat----attttca-----------atttctagcATA--GAAAACCGGAGAA-------TGTggtgaaatga-------aagaa--------------------------aaaaagaattaatgCATTGACAAGTAAACC---ACGGA----------------GATActaatgtttc---ttttttgctc-caTCGTCGTCTt--------cc---------cctcctccttttttgcCTTATTCCATA-------CGGAGGCCTT-CTTATTCACTGGATTTGGGGGG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340711 254 -  4147112 tctgttttt----atgtttcatattg------------ttttgtt--gccatttcttctattttctgatttcaaattaac----atttttac----------attttcagcaTGTTGAAAGCTAGAAAA-------tgtag-aacagaa-------aaaaa--------------------------aagaagaattaatGCATTGACAAGTAAACC---ACGGA----------------GATACtaatgtttc---ttttctgatg-tttcttcgtctttttttttgct---------ccccCTCTCTCCTTCGCTTTTTTCATA-------CGGACCTCGT-AGTGCCCACTGGATTTGGGGGC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   466895 1196 +   720316 I

a score=60527.000000
s ce10.chrX              2643621 83 + 17718866 CACGAATGT----ACA-TCTGATGGATTCTGAATGCAAAACATGTATGTTC-------TTGTGGATTACGGATGAATTCACATTCAGCACGAATT
s cb4.chrX              17388931 86 - 21540570 -----ATGT----GCATTCTGATGGATTCAGAATGCAAAACATGAATGTTTTTTGGGAGGAAGAGGTACGGATGAATTCACATGCAACACGGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   184279 82 -  1794024 ---GTATGT----ACATTCTGATGGATTCAGAATGCAAAACATGTCTGTTT------ATGGAGAATTACGGATGAATTCACATGCAACACGAAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    218539 79 +   484378 -----ACGT----ACATTCTGATGGATTCGGAATGCAAAACATGT-TGCTT------TTTGCGAATAACGGATCAATTCACATGCGACACGAATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3340965 84 -  4147112 -----ATGTATGCACATTCTGATGGATTCAGAATGCAAAACATGTCTGTTT------TTGGAGAATTACGGATGAATTCACATGCAACACGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   468091 84 +   720316 ----CACGC----GTGTTCAGATGGATTCAGAATGCAAAACTCGTCTGTTT---TTGGGGGCGAATTACGGATGAATTCACATGGAAAACGCATT
i caeJap4.Scaffold18213 I 1196 I 38

a score=14325.000000
s ce10.chrX              2643704 100 + 17718866 G--TCGCCG---------GA--------TCGTGTGTACTACTCA-------------TTTTCTACTCTGT-------------------------------------G----TGAAGTGTGGCCCAATGAAAAAAATGAATGGAAAAAAAGCTCATTGATTAATATTTTATGA
s cb4.chrX              17389017 155 - 21540570 GGACTT--GTGGATTAATGATGCCTCAGACAAATGCACTATTCAttcttcgtttcgattttcttcttttctctctttctctctctctcaagtTTTGCTTTTAAAATGG----TGGTTTGTGACCGCTCTAAAAACATTG------------CTCATCAATTAATATTTTATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   184361 117 -  1794024 G--CTG--G---------GATGCTAC--ACAAATGCactattcatttttccttt---tctttcccttttttctgtaTGTGTGTCTGC--------------------G----TGGTTTGTGAC--CCGCAAAAACATCA------------CTCATCGATTAATATTTCATGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    218618  96 +   484378 A--CTG--A---------GATGCTAC--TCAACTGCAC-------------------tcttcacatttttttattgtgtGT--------------------------G----TGGTTTGTGact-cttcaaaaacatcA------------CTCATCAATTAATATTTCATGA
i caeSp111.Scaffold582  C 0 I 538
s caePb3.Scfld02_0       3341049 100 -  4147112 G--ATG--A---------GACGCCAC--ACAAATgtac-------------------tcttccattttttttagtttgtgt--------------------------GAGCTTGGTTTATgacc-aacaaaaaacatca------------cTCATCAATTAATATTTTACGA
i caePb3.Scfld02_0      C 0 I 1204
e caeJap4.Scaffold18213   468175  38 +   720316 I

a score=2409.000000
s ce10.chrX              2643804 17 + 17718866 GCCATGTACATGGATAC
s cb4.chrX              17389172 13 - 21540570 ---ATG-ACATGGACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   184478 13 -  1794024 ---ATG-ACATGGACAC
i caeRem4.Crem_Contig15 C 0 I 238
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468175 38 +   720316 I
e caeSp111.Scaffold582    218714 538 +   484378 I

a score=29.000000
s ce10.chrX              2643821 3 + 17718866 ACT
s cb4.chrX              17389185 3 - 21540570 GTT
i cb4.chrX              C 0 I 1511
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468175 38 +   720316 I
e caeSp111.Scaffold582    218714 538 +   484378 I
e caeRem4.Crem_Contig15   184491 238 -  1794024 I

a score=0.000000
s ce10.chrX              2643824 514 + 17718866  
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468175  38 +   720316 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I
e caeRem4.Crem_Contig15   184491 238 -  1794024 I

a score=139.000000
s ce10.chrX              2644338 16 + 17718866 AAAAACATTGAAAATC
s caeJap4.Scaffold18213   468213 16 +   720316 AAGAATGTGAAAACAA
i caeJap4.Scaffold18213 I 38 C 0
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I
e caeRem4.Crem_Contig15   184491 238 -  1794024 I

a score=8062.000000
s ce10.chrX              2644354 58 + 17718866 ACTTACTTCTTTGAGTGTTCATACACTTTATAATGGAACGCAAGAGGAGTACAATAGC
s caeRem4.Crem_Contig15   184729 58 -  1794024 ACTTACTTTTCAGAGTGCTCATAAACTGTATAGTGGAAATTAAGCGGATATCGATACc
i caeRem4.Crem_Contig15 I 238 C 0
s caeJap4.Scaffold18213   468229 58 +   720316 ACTAACCTCTCTGCACGTTCATAAACTTTGTAGTGGAATTCAAGGGGAGTGCGATGAC
i caeJap4.Scaffold18213 C 0 I 1031
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I

a score=325.000000
s ce10.chrX              2644412 129 + 17718866 GGTAGGATTTCTTCACCCTTGGCGCTCTACCTAGCATAGTTGAAATAAACTAGAACTAGTACTTTTCGCTTATA-----------CTTGCCAACTTTCC-------TCTGCTTGACCGAGCCCGTTATCA---GTTATTGTGTTTTATAT
s caeRem4.Crem_Contig15   184787 148 -  1794024 gatctttttttctcatcttgaCAACACAAGTCAACAT--TTTATAGAGAATATAACTGGAAAATCGGATCGAAAAGAGTAAAACCTTCACCAGCTTTCCAATTTTATCCGGTTTAGAAAACCCATTAtcattttttatagttttttacAT
i caeRem4.Crem_Contig15 C 0 I 133
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I

a score=0.000000
s ce10.chrX              2644541 718 + 17718866  
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I
e caeRem4.Crem_Contig15   184935 133 -  1794024 I

a score=528.000000
s ce10.chrX              2645259 179 + 17718866 AAATAGGAAACAGT--AATTGCCAAGTATAGAAATGACGGTCGCGTGACATTGTCTGAACAGAAAACGCTGG------TGAAATTGGTGCTTTAGCTAGAATTTATGGAATTCACCACCATGAAAAAGAAGGGAAACATCAAGGGATCCTACGCGCGATATTTTATATTCAATAATTCTGTATAAC--G
s caeRem4.Crem_Contig15   185068 168 -  1794024 AAATAGGAGATATTCTAATTGTTGGCTATAAGAATGTCTATTGCGTGACACAGT------AGAATATGCCGGATTTGCTCAACAGGATGttcca--caaaatttttgacaacgACTTGTAGAGGAAAAAGCGGATATATC------TTTTTCGTACAAAATGAAGTATAGAA-------ACAAAACTAA
i caeRem4.Crem_Contig15 I 133 C 0
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17389188 1511 - 21540570 I
e caeSp111.Scaffold582    218714 538 +   484378 I

a score=2484.000000
s ce10.chrX              2645438 48 + 17718866 AGTAATAAAGCACTCTTGTAATGAAAAGGAGT--A-------ACTAGCGTA-----TGCTCC
s caeRem4.Crem_Contig15   185236 56 -  1794024 AGTAATAAAA------TGTGTGGATGTGAAGTTGAGCAAGTTGCTACTAGATATCTTGCTCC
i caeRem4.Crem_Contig15 C 0 I 15
s caeSp111.Scaffold582    219252 53 +   484378 AGTAATAAAGAA--GTTGTGACGAAATGAAGTCGA-------GCTACTGGAGATCTTGCTCC
i caeSp111.Scaffold582  I 538 I 15
e caePb3.Scfld02_0       3341149 1204 -  4147112 I
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17389188 1511 - 21540570 I

a score=17124.000000
s ce10.chrX              2645486 49 + 17718866 ACATCCTCAGAATTATAAATTAGCTTATTAAGGCCTCGAAGTTTTTTTT
s cb4.chrX              17390699 49 - 21540570 ACGTCTTGTGAATTGAAAATGAGCTTATTAAACGCCAGAGCTCCCTCTT
i cb4.chrX              I 1511 I 12
s caeRem4.Crem_Contig15   185307 42 -  1794024 ACGTCTTTAGAATAGAAAATGAGCTTATTAGAAGGCAGAACC-------
i caeRem4.Crem_Contig15 I 15 C 0
s caeSp111.Scaffold582    219320 42 +   484378 ACGTcttgagaattgaaaatgagcttaTTAGAAGCC---TCTTTA----
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3342353 45 -  4147112 ACGtcttgagaattgaaaatgagcttATTAGAAGCCAGTTCTTTC----
i caePb3.Scfld02_0      I 1204 C 0
e caeJap4.Scaffold18213   468287 1031 +   720316 I

a score=-3855.000000
s ce10.chrX              2645535 14 + 17718866 CTCTAGCAATATTT----
s caeRem4.Crem_Contig15   185349 16 -  1794024 CTCTGGCGACAGCTTC--
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    219362 11 +   484378 GGATGG----Atctt---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342398 14 -  4147112 TTTTGA----TGCTTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17390748 12 - 21540570 I

a score=-2378.000000
s ce10.chrX              2645549 152 + 17718866 GATGAAAAGAATGTGCAATA-T-TCTTCCGACTCCTACGAACTCATGAAAAATTGACAGCTCTGTGTAA----------AGAGTTTTTACATGAGTTTTAGTAAACTCGTGGATATTAGATTTATCA----------ATATTTCAGAAGAA----------TGAATACATATA----CCGGAAAAAGT-------------------------
s cb4.chrX              17390760 112 - 21540570 GATGAAATGAATGTATCCTACT------ATACTCCTACACTCTAATAAGAAATTTACAGCGAATCCGGA----------------------AAATTCCGGGTTCATGCGTGA----------TCTGA----------ATA--AGAAAATTA--------------------------TCGGAAAAAGC-------------------------
i cb4.chrX              I 12 I 59
s caeRem4.Crem_Contig15   185366 138 -  1794024 ATTGAAATGAAGATGAAGTA-T------CTACTCCTACACgcttatgaaaaattgacgtAAAATCTTGATCTGTCCGGTAGAA-----AACAAATTCCGGGTTAGTGCGTGA----------TCTAACCCTATTAATATG--CTAAtatct--------------------------gtgaaaaaagt-------------------------
i caeRem4.Crem_Contig15 I 1 I 18
s caeSp111.Scaffold582    219373 144 +   484378 -----gatgaaaatgaaac--ttgtTGCCTACTTTTATATTCTCATGAAAAATGGGCACATAACCTGAA----------AGTG-----ACAAGTTTCCGGGTACATACGTGA--TCttga------a----------ata--tcaaaagaa----------CGTTcacattgaaat-ttcaggaaaat----aatgaat------------aa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342412 183 -  4147112 CATGAAATGAAGATGAAGTA-TCGTTTCTTACTCCTACACTCTTATGAAAAATGGACATAAATCCTGAA----------AATG-----ACAAGTTTCCGGGTTTATGCGTGA--TTCGGACCAATGA----------ATA--TCAAAGGAAGAGGTCAACCTGATTTGATAGaggtgttgaaaaaaatgatgaatgaatttgtttttcaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   468287 1031 +   720316 I

a score=-6757.000000
s ce10.chrX              2645701 47 + 17718866 --------------------TCAACATATCAACCAAGGAATAAAAACAAATGA-----------------------------TTGAAAAAAAACCA
s caeRem4.Crem_Contig15   185522 94 -  1794024 tCTTCCGAACACATCTAACATTAATGATTGATTCc--tttgatataaaaataacTCTTTTTGTAATCTCTGTGGACCAGcgcttgaaaaaaaacga
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    219517 41 +   484378 --------------------tGAATGTATGAATCTGGGTTTCTGAA----TAA-------------------------------GAGATCAACTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342595 45 -  4147112 --------------------agtgcgaCTGATGTCAGAttgacaaaaaactga-------------------------------gaaaagaaACCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   468287 1031 +   720316 I
e cb4.chrX              17390872 59 - 21540570 I

a score=-8669.000000
s ce10.chrX              2645748 54 + 17718866 GATTAGAATAATCACGTTGACAC-----ACTTTTGTTCAAAAAGATT---------------TGAAAA---CTAATC
s cb4.chrX              17390931 52 - 21540570 gatCAGGATAATCT----ATTCTTATTGAACTATATTCAGA---------------------ATAGATTTTCTAATC
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig15   185616 54 -  1794024 gattaTTCTAATCA----GTTAC-----AGCTATTTTCAAA----TC----------CATTGTTCGAAGTTCTAATC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    219558 44 +   484378 CATCACGTTTTTCA-------TC-----AG--ATATTCAAA----TC---------------TGGATCAAGCTAATC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342640 55 -  4147112 GATTATGATTGCC---------C-----AG----ATTAAAA----TCGTTGATagctttttttgagtaaatctAATC
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18213   468287 1031 +   720316 I

a score=-13104.000000
s ce10.chrX              2645802 90 + 17718866 ----------CACTCAGACTATTTATATATTCGTACGTACAGAGTTATGTAAAAAAAATATATGGCCGTCTCAAAAAATGT-----TGCCA-ACGATACTAGGCCG---------
s cb4.chrX              17390983 74 - 21540570 ----------TTTCTGGACTGT-----tgctattatttttttattg---------------------gtttaCAAGAACTT-----TGGAATACAATGATATAGctagagaaaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   185670 72 -  1794024 ----------TTTCGAGACTTTATAG-TAAAACAGTTGATAAAGTG--------------------CATGTACAAGTGCAC-----TGAGAAATGATGTTGGACTT-------GG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    219602 90 +   484378 GGCTACAGATATTTTAGTTCATTCTT-TGTTAATCTTTTCCGAATGACGAAGA----------GGTCATCTCAAAGTGCGCATTCATTGAATACAATTGCA--------------
i caeSp111.Scaffold582  C 0 I 29
e caePb3.Scfld02_0       3342695 76 -  4147112 I
e caeJap4.Scaffold18213   468287 1031 +   720316 I

a score=9097.000000
s ce10.chrX              2645892 34 + 17718866 CCAAAAAAAGTGAGGCGAGC-GAAAAGATCTATCT
s cb4.chrX              17391057 35 - 21540570 agaaaaaaaatatgagggacaaaaaatatccatct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   185742 34 -  1794024 CACCAAAAAGTgggggggAC-AGAAATATCTATct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    219721 31 +   484378 ---caaaaaa-aagagaggcaagaaagattttggt
i caeSp111.Scaffold582  I 29 C 0
s caePb3.Scfld02_0       3342771 32 -  4147112 ---caaaacGTGAGGGAGGCAAGAAATATCTATCt
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18213   468287 1031 +   720316 I

a score=79416.000000
s ce10.chrX              2645926 149 + 17718866 AAGGAAAAAAAGAAG-------GAAAAAGACGAAAGC-----------GCAGAAGCAGAAGAAAA------ACGCGTGT-TTTT---GGGGTT--GCACATATTTGTAACATTC-GCCGCT---CAGTGAGCCG------------------CC--AAA---------CGCTGAGTGCTCTTTTAGTTTTCAATTAT------GGCTACTGAGC----TCTG
s cb4.chrX              17391092 168 - 21540570 tggaaaaagaaaaagtagcgacaa---------------------------------gaaaaaacgagaaaccgCGTGTCtttt--tttGGTAACACACATATTTGTAACATTC-GCCCAGAGCCAGTGAGCCG------------------CCaaaaaaaCCCAACGCGCTGAGTGCTCTTTTAGTTTTCAATTATGGCGGTGGCTACTGAGCTATGGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   185776 140 -  1794024 aaggaaaaaaagaag-------aa---------------------------------ggaaaaac------cCGCATGt-tttt--ttGGGTA--GCACATATTTGTAACATTC-GCTGAG---CAGTGAGCCG------------------CC--AAAAACCCAACATGCTGAGTgctctttcagttttcaattat---gGTGGCTACTGAGC----ACCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    219752 138 +   484378 aaaaaggaagaaaaa-------aa---------------------------------agaagaaa------atgcgTAT-TTTT----GGGTA--GCACATATTTGTAACATTC-GTTGAG---CAGTGAGCCG------------------CC--AAAAACCCACCAAGCTGAGTgctctttcagttttcaattat---gGTGGCTACTGAGC----ACCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342803 139 -  4147112 atggaagaaggaaga-------aa-----------------------------------aagaaa------ccgcGTGT-TTTT--TGGGGTA--GCACATATTTGTAACATTCAACCGAG---CAGTGAGCCG------------------CC--AAAAACCCAACACGCTGAGTgctctttcagttttcaattat---gGTGGCTACTGAGC----ACCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   469318 190 +   720316 aagtaaaaaaatgag-------aaagtaaaataaatctttagtgtgaaggagaaaacaaaaaagt------gtgcGCAT-TTTGTGTTGGGTT--GGACATATTTATAACATTT-GCTGCT---CGGTAAGTTGAGCGAGTTGAGACAAGCTTC--CAAAACCGAAACCACCGAGGGCTCTTCCAGTTTTCAATTAT------AGTCACTGAGC----ACCG
i caeJap4.Scaffold18213 I 1031 I 2129

a score=-1363.000000
s ce10.chrX              2646075 9 + 17718866 TCATATTGG----
s cb4.chrX              17391260 5 - 21540570 T----TTGG----
i cb4.chrX              C 0 I 1078
s caeRem4.Crem_Contig15   185916 5 -  1794024 C----TTGG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    219890 9 +   484378 C----TTGGTAGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342942 9 -  4147112 C----TTGGTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I

a score=4380.000000
s ce10.chrX              2646084 39 + 17718866 CCTGGAATTAGAAAATAATTGCAAAG-----TTTGACCTGTTTT
s caeRem4.Crem_Contig15   185921 28 -  1794024 -------TTCGAAGGAAATagg---------ttttacttttttt
i caeRem4.Crem_Contig15 C 0 I 65
s caeSp111.Scaffold582    219899 34 +   484378 ----------AAAGGAAATAGGAATATAacattttacttttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3342951 33 -  4147112 ----------GAAAGGAATAGGAAGGcaac-ttttacttttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I

a score=-882.000000
s ce10.chrX              2646123 1 + 17718866 C--
s caeSp111.Scaffold582    219933 1 +   484378 c--
i caeSp111.Scaffold582  C 0 I 73
s caePb3.Scfld02_0       3342984 3 -  4147112 ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=93.000000
s ce10.chrX              2646124 51 + 17718866 ATTATATGCAGTTAGTTTATTAAGACAA----CATATTTTTCGAGTATTTCGCAA
s caePb3.Scfld02_0       3342987 48 -  4147112 actttacccaacta-------aaaataaaaattaggtttttcgcccacatttcaa
i caePb3.Scfld02_0      C 0 I 200
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934 73 +   484378 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=0.000000
s ce10.chrX              2646175 248 + 17718866 TTGttaaaggtggattagcgcaagtggggaattgttaaaacgcactactaaagtgccaaattgaccaaatattatagtttaaaaaaaatcaaaaaaaAAAATTTAATGCATATTTTCGCCATTTTGGTGCCAAACTGGCCAAACATTTTAGTTTAAACAAATCttaaaatttttaaaattttaaatGCATTTTTCGCTATTTTTCGGTGCCAAATTGACCAAATATTATAGCTTAAAAACCAACATAA
e caePb3.Scfld02_0       3343035 200 -  4147112 I
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934  73 +   484378 I
e caeRem4.Crem_Contig15   185949  65 -  1794024 I

a score=277.000000
s ce10.chrX              2646423 147 + 17718866 CTTTGATTTTTTTTAAAATGAATTTACTAA-----ATTTTTGCCACTTTTTTGGATGTCGTAGATCAAAAA----AACATTTTTAACTTTGAGTTTTATGGTCAATGTGTTTATCGAAAACCAATATTCAAACACTTTAGGAATTCGATCTCAAAA
s caePb3.Scfld02_0       3343235 143 -  4147112 ctttttttccccttaaaattcccctacgaatgagagttcccaccccctttaagaA--------ATCAATGAGGttaatttttccgtttcggGGATTTCTGGCTGAAACGTTCgtttatgatattttttcaga-atttca----ttagAGCTGAAAA
i caePb3.Scfld02_0      I 200 I 125
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934  73 +   484378 I
e caeRem4.Crem_Contig15   185949  65 -  1794024 I

a score=0.000000
s ce10.chrX              2646570 133 + 17718866 ATGGAAAAACTGCCGTTCAAAATTGTTGCAagtcgttttcaacaatttccccactggcgctactccaCATTCAAAAACTGAAATTTAAAATTTTTTTTGAATGGTTTTTACGAGAGGATGCGTAGTACAATTA
e caePb3.Scfld02_0       3343378 125 -  4147112 I
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934  73 +   484378 I
e caeRem4.Crem_Contig15   185949  65 -  1794024 I

a score=635.000000
s ce10.chrX              2646703 49 + 17718866 TACAATAAACATTTT---TGTTTAAAATTCTGGTATAAATCAGCTTGAAATT
s caePb3.Scfld02_0       3343503 46 -  4147112 cgcaatcaattttttgattcttcaaaacta------aaattattGTGAAGTT
i caePb3.Scfld02_0      I 125 I 45
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934 73 +   484378 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=0.000000
s ce10.chrX              2646752 37 + 17718866 GGAAAAGCGCTAGTGGATTTTTTTTCAGAAGTTTTTT
e caePb3.Scfld02_0       3343549 45 -  4147112 I
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934 73 +   484378 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=337.000000
s ce10.chrX              2646789 107 + 17718866 TTTGATTTTAACAATTTTCAGAACA-----ATTCAGACTTTTTTGGAAAAACATC-----AATGATTATATAGTTTATATATAAATAATTGGAACATCATCAAGTTTTATAAATTTG
s caePb3.Scfld02_0       3343594 110 -  4147112 tttggttgtaaaaat---caaaacatacaTATATAAAACATTCCGAcaaaatgtctgaaaactcatcattt--ttcagctatAAATGG--GCTATACTATCATGACTTTTATTATTA
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17391265 1078 - 21540570 I
e caeSp111.Scaffold582    219934  73 +   484378 I
e caeRem4.Crem_Contig15   185949  65 -  1794024 I

a score=-3211.000000
s ce10.chrX              2646896  94 + 17718866 -TTGAAAAAAATATA--ATCTATATTTTTTGACACTTTTAAACAAAATGGCATTTATTTTAT--------GTTTTGCTTCTTTTTATGTTTCT-----------ATTTAAAAAAAA
s cb4.chrX              17392343 103 - 21540570 -TTAACAATATcaaa--agctctatttttgaaaacttgaaaata-----ctAAATTTCCGAC-actcagaattttgattt-ttgtataacaccaaatctttaaaatttaaaaa---
i cb4.chrX              I 1078 C 0
s caePb3.Scfld02_0       3343704 103 -  4147112 CTCAATAATTAAGAATCAGTTTAATTATTTCATGGTTTATCAC------CCAATTATTTGACGATTGACCGGCTCGATTC----GATGAGACT---TGGTtgagatttggaaaaaa
i caePb3.Scfld02_0      C 0 I 89
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e caeSp111.Scaffold582    219934  73 +   484378 I
e caeRem4.Crem_Contig15   185949  65 -  1794024 I

a score=367.000000
s ce10.chrX              2646990 65 + 17718866 GTATTTTTCAACTTTTAAACGTGATGTTAGCATTAAAGACGCAAACATTTCCAACAAAAAAATTG
s cb4.chrX              17392446 59 - 21540570 ttgtttcattaTCTTTA----TTGTTTTAACAGTGAGAAGG--AATATTTTCAGTATATGAGTTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3343807 89 -  4147112 I
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e caeSp111.Scaffold582    219934 73 +   484378 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=-1674.000000
s ce10.chrX              2647055 16 + 17718866 ----------------TGCGAAAAAACTCCTA
s cb4.chrX              17392505 31 - 21540570 TTGAACACAAAAGAAACATGGTTAGCTCTTA-
i cb4.chrX              C 0 I 4
s caePb3.Scfld02_0       3343896 15 -  4147112 ----------------TGTGATGAACTTTCT-
i caePb3.Scfld02_0      I 89 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e caeSp111.Scaffold582    219934 73 +   484378 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=300.000000
s ce10.chrX              2647071 1 + 17718866 C
s cb4.chrX              17392540 1 - 21540570 C
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold582    220007 1 +   484378 C
i caeSp111.Scaffold582  I 73 C 0
e caePb3.Scfld02_0       3343911 0 -  4147112 C
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e caeRem4.Crem_Contig15   185949 65 -  1794024 I

a score=66212.000000
s ce10.chrX              2647072 266 + 17718866 ATACCTGAACTGGGTGACATCTTCTAATCTCATTGAGCTGATTGATCTCATTTTACA------CGAACAGAATAAAAGAATT--------CGTCGC--------------GATGTCT--GCCAGAATCACGGCAAA----GAACTTTT---------------GT---GGGCCATGGAGATGAGATC-----------------CGCACAAGCTCATCGACCCTCC-CATTTATTCCAAAA---------------CCCGTTTTATGTGAATCCATTAAAATATAAAATTCG------------GA------CTGCTCATTACAAAAGCCACTCTGGTTTTACGAG-AGCACGAG------CGTCTTGTGACATTT
s cb4.chrX              17392541 352 - 21540570 ATACCTGTACTGGGTGACATCTTCTATCCTCA------TTTTTgcccacattttttgaataaccagaaagaataaaattttctaaataaacTTCAAATTTAGACCT----GAAGTTCTGGCGAAATTCGAGAataaaagtgaaatttcaacttttataTGAGTGCGATGCTCCTTGGAGATGAGCCTAGGAGATGAGCAACGCTCGCGCGTGTGCGGCGACGAGattcatttatt-caaaaatctggtcGCCTCGCCCCATTTTATGTGAATCCactaaaatatgaaattcg------------gGAAGGGACTACTCATTACAAAAGCCAATCTCGTTTTATAAC-AGGGCACTTTTTTGGGTCTTGTGACACTT
i cb4.chrX              C 0 I 300
s caeRem4.Crem_Contig15   186014 278 -  1794024 ataccTGAATTGTGTGACATCTTCCAGTCGCAAAGAAGATATTGATCTCATTTTTAG----GCAAGAATACGTGGACGTTTC------AACTTCAG-------------------CCGGTCGAGATTTATAAATGAAGG-GACTTTTTGGCGTTTGCGGTCGTGTG--GCTCCTTGGAGATGAG-------------------TCGCGCGCAGGGGGCA--------CATTCAGT-CAAAA---------------TCTGTTTTATGTGAATccattaaaatatgaaatgcG------------GG------CGACTCATTACAAAAGCCACTCTTATTTTATGAC-AGGACGCTTT----GGCCTTGtgacattt
i caeRem4.Crem_Contig15 I 65 C 0
s caeSp111.Scaffold582    220008 292 +   484378 ATACCTGAATTGAGTCACATCTTCCAGTCTCAATGAAGAGATAGAcctcatcttttt------caaaagatacAGTAGCTCT----CAGCTCTCAG--------CTCTTAGTCGTGTCAGTTGAATTTATGAACAAACGGAGATGTTT----CTTGCGCGTATGT---GCTCCTAGGAGATGA---------------------CACGCGCGCGGGGCc--------catttatt-caaaa---------------tccGTTTTATGTGAATCCattaaaatatgaaattcgGAAGAAAGAAACGG--GGGCCAAGTCATTACAAAAGGCTGTCTTGTTTTATGAC-AGG-----------GGCCTTGTGACATCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3343911 272 -  4147112 -CACCTGAATTGAGTCACATCTTCTAGCCTCATTGAGGAAAttgatctcattttcag------tggaaG-TATAGAAGTTTG----ACGTTCTCAG--------TT----gacgttt---tgaagtttatgaATGAAAGTGAAATATT----CTTGTGCTCATGT---GCTCCTTGGAGATGA---------------------CACACGCGCTCGGcc--------catttatt-caaaa---------------tccgTTTTATGTGAATCcattaaaatatgaaattcg------------GG--CGGGCAACTCATTACAAAAGCGCGTCTCTTTTTATGACAAGG-----------GGTCTTGTGacattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I

a score=-2980.000000
s ce10.chrX              2647338 5 + 17718866 GACTT----
s caeRem4.Crem_Contig15   186292 5 -  1794024 ----tattt
i caeRem4.Crem_Contig15 C 0 I 868
s caeSp111.Scaffold582    220300 5 +   484378 G---CGGT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3344183 8 -  4147112 gacttttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I

a score=1088.000000
s ce10.chrX              2647343 78 + 17718866 TTGGGTCTTCA----GAAAACTAACTTAAAATTTAAGAACTGGAT-GAACAATACCCCCACATTGAAGAAAAAATTATTGGAA
s caeSp111.Scaffold582    220305 77 +   484378 TTTTGCTCCcaatcggaagaaaaaacaa------aatgacaGCGTAGAAGGATGAACTCAtacggaaaaaaagattaagaGAA
i caeSp111.Scaffold582  C 0 I 146
s caePb3.Scfld02_0       3344191 79 -  4147112 ttttgtttccgat--gtatgaaaaacgaaaagctaAGGACATCTCAGAAGGATGaactttgatg--aaaaaggaTTTAGTGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=-4671.000000
s ce10.chrX              2647421 777 + 17718866  
s caePb3.Scfld02_0       3344270 635 -  4147112  
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I
e caeSp111.Scaffold582    220382 146 +   484378 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=0.000000
s ce10.chrX              2648198 56 + 17718866 TTTGGGCATTTTAGCACTATGGGAGTGATTTTCAACAATTTCTACACCAAGGACAC
e caePb3.Scfld02_0       3344905 31 -  4147112 I
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I
e caeSp111.Scaffold582    220382 146 +   484378 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=368.000000
s ce10.chrX              2648254 21 + 17718866 CATCTCTCTTTAA-----ATCATCAG
s caePb3.Scfld02_0       3344936 26 -  4147112 CGTCGTTCTttaatatatatttttgg
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I
e caeSp111.Scaffold582    220382 146 +   484378 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=977.000000
s ce10.chrX              2648275 12 + 17718866 AACTTTGATGCC
s caeSp111.Scaffold582    220528 12 +   484378 AACTATAATGCc
i caeSp111.Scaffold582  I 146 C 0
s caePb3.Scfld02_0       3344962 11 -  4147112 -acCTTTATTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e cb4.chrX              17392893 300 - 21540570 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=-2547.000000
s ce10.chrX              2648287 3 + 17718866 AGA--
s cb4.chrX              17393193 3 - 21540570 --agc
i cb4.chrX              I 300 C 0
s caeSp111.Scaffold582    220540 3 +   484378 -aaa-
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3344973 3 -  4147112 -GAA-
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18213   469508 2129 +   720316 I
e caeRem4.Crem_Contig15   186297 868 -  1794024 I

a score=10026.000000
s ce10.chrX              2648290 180 + 17718866 A----AATTTTTGAATTTTTTT--TGTTCGAAAA-TCATATGAAAAACTTACATTTTCGATTCTTCAGTGTGAATGTTCGTAATCAAGCTCTCATTTT---------------GAA---A-ACGAGAGAACATTTTCTTCTGCTCAAACATGGATAGAATGAAGAATTCTCACCAGTCCTATGATATATTGAGGCC--TGTGATTTCT
s cb4.chrX              17393196 158 - 21540570 ------------aaatttttga--aaatcaaaaaagaagaaaatgaactCACTCTTTGGACTGTTTGGTGACAAGTTTCGTAACCAGCCTCTCATGCT-----CGTAGCGCATGAATTTA-TACAT-----------TTCTTagcgaat--------tttcgaaaattttcac----------acAGATTGGAG-TGGTgtgattttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   187165 180 -  1794024 -----aaattttaaattgtttt--atttcttaCTATTGCAAATAAAACTTACTGTTTTGACTGCACAGTGACAGTTTTCGTAACCAATCGTTCATTCT-----CGTAGCGCGTGAA---A-AACATACTAGTCCTCCTCCTCACCAGa------------aaaaaaTGCTCACCAGTCGTATGATAGATTGAGGCCTGTGTGATTTCT
i caeRem4.Crem_Contig15 I 868 C 0
s caeSp111.Scaffold582    220545 175 +   484378 atttcagtttcggaattt------attttaaaaatttgccCAGAGAACTTACGTTTTTGATTGTTCAGTAACCGTTTTAGTAATAACTCGTTCAGATT-----CGAT--TCGTGAA---AGCATatacatatttttcttttgacaaA-----------CCAAAAAGTTCTCACCAGCCGTAT----GATTGAGGCC--TGTGATTTCT
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3344978 184 -  4147112 A----AACACCGTAATTTTTACCCAATTAAAACGTTTA--AATATAACTTACTGTTTCTTTTGCACTGTTTCCATTCTAATAATAAGtcgttcatttttccaacGATAAACTTGAA---A-CAGAAGCAAAGTTTCAATCATAAAAAAT--------GCAAGAATATTCACACCAGAACTAT----GATTGAGGCC--TGTGATTTCT
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18213   469508 2129 +   720316 I

a score=38994.000000
s ce10.chrX              2648470  69 + 17718866 ATA--TCTAACGCTTTTGAATATTTC------------TCTCTTTTTCTCTATTGCGCTCCAATAATTGCTATTCAC-----------------------TCTT-TT
s cb4.chrX              17393354 105 - 21540570 atatttctagcgcttttgaattttcctgctctcctttttttttctcttccta-tGCGCTCCAATAATTGCTATTCACACACACACTGACTCGCTTTCGCTTCTC-GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   187345  80 -  1794024 ATA--TCTAATGCTTTTGAATTtcgctctctttctctctctttttttgcctA-TGCGCTCCAATAATTGCTATTCACAC---------------------TCTC---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    220720  67 +   484378 ATA--TCTAACGCTTTCAaaat----------------actctttttttcta-tgcGCTCCAATAATTGCTATTCacac---------------------tctcttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3345162  73 -  4147112 ATA--TCTGACGCCTTGGAATTTttctg---------ctctctttttttcta-tgcGCTCCAATAATTGCTATTCACAC---------------------TCTC-GG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   471637  70 +   720316 ATT--CCTAGCTCTTTTGAATTTCTCTG----------TTTTCTCCGCTTTC-CGCGCTTCAATAATTGCTATTCACAT---------------------GTTT---
i caeJap4.Scaffold18213 I 2129 I 227

a score=-16276.000000
s ce10.chrX              2648539 102 + 17718866 TTTTGCGCTTT---TTCATTGGTTTTGAAAACAG-----AAGATGTGGGGACAAAAATGCAAAGTTCAATGATGGATGTTGTAGGAGTATATCATAAAACTATAATATTG-----------------------------------------------------
s cb4.chrX              17393459  99 - 21540570 ACTGGTGCTTTCCCATCGGCAGTCTTGAGAATGG-----AGGAAATGGAGACGGAGATG--------GATAAGGAAT----TATAGGTCCGACACAAATTCACAATTTCCG-------------------------TGATT----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   187425  90 -  1794024 ---GATGCATT----TTAGACGTCCAAAGCATTG-----ACAGAA--------GAAGAG--------GACTGAGAAT----TAAAAGTCCAA-ATAAATGTGTATATTTTG---------------AAACCGA---CAATT----------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    220787 140 +   484378 tttggggCACT--ATTCCGTCATCTCGGGAAATG-----GGAGAAT---AGTACAAAAA--------GATTAGAAAT----TAAAAGTGcaa-actttttcagtttatcaGCATTAAAGTAAGTTAAGGACATTTAGAAGTAAAGCTCGAAAGAGAGGTTTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3345235 137 -  4147112 TTTGGGGCGCT--CATTCGCCGTCTCgggaattgaagaaagaaaatggaagaagaagag--------gatcaGGAAC----TAGAAGTGCAA-ATAATTTTACGATTTCAGgttgagag-------agaaagt---ggaGT-AAGTCAGAAACGGAAATCTTG
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold18213   471707 227 +   720316 I

a score=-735.000000
s ce10.chrX              2648641 23 + 17718866 TCG-----------------AAGAACTACTATTGACGAAA
s cb4.chrX              17393558 23 - 21540570 TCG-----------------GAAAGCTACAATTTACGGGA
i cb4.chrX              C 0 I 712
s caeRem4.Crem_Contig15   187515 40 -  1794024 TTGAGAGCAGAAGTCAGaataaaaatcttgatttaaaaaa
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    220927 19 +   484378 TTG---------------------GTTGTAGTAGAAAAAA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3345372 73 -  4147112 I
e caeJap4.Scaffold18213   471707 227 +   720316 I

a score=-2465.000000
s ce10.chrX              2648664 39 + 17718866 AGCATGAGCCT---------------------------------------GAATGTAAATGttatatatttttatttt
s caeRem4.Crem_Contig15   187556 74 -  1794024 aacagaaattttaagATTGCTTTTCTTGTAGTGTTGGTGACTGAGCAGAAGGTATTCAATAGTAGACATTTGAA----
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    220946 24 +   484378 --------------------------------------------------GGCGTTGAATAGTCgatatttgaa----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3345372 73 -  4147112 I
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I

a score=21382.000000
s ce10.chrX              2648703 110 + 17718866 tatttaCTAACTTCAAAGCCACCCAATTAGGAAGG---------GAAAATATTTTTGGTGAGTGAATTGTGTGGCCAGAATGTCTTGAATTATTCATTCTTTATTGATGGTAACAATTG
s caeRem4.Crem_Contig15   187630 110 -  1794024 TATTTACCAACTTCGAGCTCACTCAATATGGAAAGAAgtataataaaaatattactGAGGAATA--------AGAGACATCG-TTTGAATTATTCATCCAATTCTGATGGTAACAATTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    220970 107 +   484378 tatttacCAACTTGAAGCTCACCCAATTTGGATTGGAGTATG--GAAAATATTATGAAGAATAG--------GGAGAAAAGA-TataaattattcattcaCTATTGATGG-GACAATTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3345445 107 -  4147112 TATTTACCAACTTTTAGCCTATCCAATTAGGATTGGGTTA----GTAAATATTATGAATATAAG--------GGAGAAAGAATTGTGAATAATTCATTCAATATTGATGGTAACAATTG
i caePb3.Scfld02_0      I 73 I 667
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I

a score=702.000000
s ce10.chrX              2648813 5 + 17718866 TATAT
s caeRem4.Crem_Contig15   187740 5 -  1794024 CTTAT
i caeRem4.Crem_Contig15 C 0 I 67
s caeSp111.Scaffold582    221077 5 +   484378 CATAT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3345552 667 -  4147112 I
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I

a score=363.000000
s ce10.chrX              2648818 20 + 17718866 TTTGTTTAT----TTCTCTATTTT
s caeSp111.Scaffold582    221082 24 +   484378 TATACTCACgatgttttccatttt
i caeSp111.Scaffold582  C 0 I 181
e caePb3.Scfld02_0       3345552 667 -  4147112 I
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I
e caeRem4.Crem_Contig15   187745 67 -  1794024 I

a score=0.000000
s ce10.chrX              2648838 1141 + 17718866  
e caePb3.Scfld02_0       3345552  667 -  4147112 I
e caeJap4.Scaffold18213   471707  227 +   720316 I
e cb4.chrX              17393581  712 - 21540570 I
e caeSp111.Scaffold582    221106  181 +   484378 I
e caeRem4.Crem_Contig15   187745   67 -  1794024 I

a score=152.000000
s ce10.chrX              2649979 67 + 17718866 attaaaagcgta-ttcagacaaaatccccactggcgctactccacctttaaAAATTACTAGAGTTTTC
s caeRem4.Crem_Contig15   187812 60 -  1794024 attaaaaatgaaacttgaacaaaa-----acaagaacatCTCAACCAGACACAGTTACTA---TTTAG
i caeRem4.Crem_Contig15 I 67 C 0
e caePb3.Scfld02_0       3345552 667 -  4147112 I
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I
e caeSp111.Scaffold582    221106 181 +   484378 I

a score=782.000000
s ce10.chrX              2650046 3 + 17718866 TTT
s caeRem4.Crem_Contig15   187872 3 -  1794024 TTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    221287 3 +   484378 ttt
i caeSp111.Scaffold582  I 181 C 0
s caePb3.Scfld02_0       3346219 3 -  4147112 tta
i caePb3.Scfld02_0      I 667 C 0
e caeJap4.Scaffold18213   471707 227 +   720316 I
e cb4.chrX              17393581 712 - 21540570 I

a score=1054.000000
s ce10.chrX              2650049 3 + 17718866 AAA
s cb4.chrX              17394293 3 - 21540570 aaa
i cb4.chrX              I 712 C 0
s caeRem4.Crem_Contig15   187875 3 -  1794024 AAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    221290 3 +   484378 cta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346222 3 -  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   471707 227 +   720316 I

a score=153536.000000
s ce10.chrX              2650052 233 + 17718866 ACTCACCTGGTATTAATGAAATCTTCTAGGTCTGCAAGACGTTGTGCATTTGAGATCCTCCGCCTGGTTGACCT-----AAAGACTCGTTATTTTTTGTTGAATTTCTGTC---------------------------------------------------------------AGTTTACAA---ATCT-----------------------------------GCACACCTCCTCCGGAAAAATGCAGGTTTATTTGATCGGTAACTTGCAAGTTTGGTACAGTCTCCAACCGATCCTGTGCGGTTTTCCATCGCTCGGAGACGAGCTGCCTGA----------AAA
s cb4.chrX              17394296 239 - 21540570 actaacctgGTATTGATAAAATCTCCAAGGTCTGCTAGACGTTGTGCGTTAGAAATGCGACGTCTTGTAGATCt----gcaaaattagaatttc--------agacatttt---------------------------------------------------------------caaacgcat---tttctc-------------------------------aaaactacCTTCTCCGGAAAAACCCAGGTTTATTCGAACGATAACTTGCAAGTTTGGTACAGTCTCCAACCGATCCAGTGCGATTTTCCATAGCTCGAATGCGAGCTGCCTGG-AGAGacaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   187878 237 -  1794024 ACTAACCTGGTATTGATAAAATCTTCAAGGTCGGCTAGACGTTGAGCGTTGGAAATACGTCTTCTTGttgatct----gaaatattcttttttt--------gattgtgTA---------------------------------------------------------------AAGTTACAT---TTTT----------------------------------ATATCACCTCCTCCGGAAAAATGCAGGTTTATTGGCTCGGTAACTGGCAAGTTTGGTACAGTCTCCAACGGATCCCGTGCGGTTCTCCATAGCTCGAAGACGAGCTGCCTGGAAGAATCAGGAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    221293 223 +   484378 aCTAACCTGGTATTGATAAAGTCTTCAAGGTCCGCCAACCGTTGTGCGTTGGAAATACGTCTTCTCGTTGATCT---ATAATGATTCGAATGTT--------AATCGT--------------------------------------------------------------------CTCACAA---CTTC----------------------------------AGTTTACCTTCTCCGGAAAAACGCTGGTTTATTGGCTCGGTAACTAGCAAGTTTGGTACAGTCTCCAACCGATCCAGTGCGGGTTTCCATCGCTCGAAGACGAGCTGCCtgc----------aaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346225 225 -  4147112 actaACCTGGTGTTGATAAAGTCCTCAAGATCTGCCAACCGCTGAGCGTTGGAAATCCGTCTTCTcgttgatctgaaaaaaagattcaaaatct--------AA------------------------------------------------------------------------ATTACAATATTTTT----------------------------------GCCAAACCTTCTCCGGAAAAATGCAGGTTTACTGGCTCGATAACTGGCAAGTTTGGTACAATCTCCAACCGATCCAGTGCGGGTTTCCATCGCTCGAAGGCGAGCtgcctgg----------aaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   471934 324 +   720316 ACTCACCTAGTATTAATGAAATCTTCCAGGTCTGCCAAACGTTGTGCATTTGAAATGCGTCTCCTTGTtgatct----gcaattttttttttca--------atttctgttGTTTTGTTCTGTTTCTCGAGAAATAAAGCTCCAGAAAACGTTCAAATGAACTTTACTGGACAAAAAGCGGAT---TTTCTCGTCTATGTAGAGGACTTTCGAATTTAGAGAGACGCCTACCTTCTTCGGAAAAATGCTGGTTTATTTGCACGATAACTTGCAAGTTTGGTACAGTCTCCGACCGATCCTGTGCGATTTTCCATTGCTCTGAGACGAGCTGCCTGA----------AAA
i caeJap4.Scaffold18213 I 227 I 870

a score=-19862.000000
s ce10.chrX              2650285 63 + 17718866 TTAAG---------AAAGTTAGGAATAAAAATTGGTAGACTTATTTTTAATCTTGAATTGTACCAGTTTGTA------------
s cb4.chrX              17394535 54 - 21540570 tcatg--------gaaactTCAAGAA----AGTGGAA------CTTGTTAACCCAGTTTTCTAGACTCTTCA------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   188115 68 -  1794024 TTATGTGTGCACAGAAAACTAAAGAT----TGTGGTGGGCCCTTCTATTTCACCAGATCTTAGAAATCATAA------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    221516 54 +   484378 ttttt---------aattttcgttAT----TTTAATG------------AAACTGAGTGTTCAAAACCATtcta-----tttta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346450 56 -  4147112 ttttt----------atatgagtga------atgaag------------aaattgtatatttcaaatcaaactacacttttttg
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18213   472258 870 +   720316 I

a score=-7427.000000
s ce10.chrX              2650348 65 + 17718866 TGTTTTTGCGAAACATATACATAAATCAAAAAC------TGAGTTGTAATAATTTATGGAATTTA-----T--ATATC-----
s cb4.chrX              17394589 67 - 21540570 ----GATTTGAGACAT----ATAAATCAAAATCTGG---AGACCAAAAGTCTTTTGTAGTCTagatttctttgaaatc-----
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   188183 57 -  1794024 ATGTGTTCTGAGATA-----ATAAATCAATCACTAAGTCAGaccaacaa--------aaaacaga--------aaatc-----
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    221570 56 +   484378 ---taatttcaaaaa-----ttatattaa----------tgacttcaaatttt----ggcagaaa-----ttgaaatctgGGA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3346506 76 -  4147112 I
e caeJap4.Scaffold18213   472258 870 +   720316 I

a score=93296.000000
s ce10.chrX              2650413 238 + 17718866 CTTTATTCTGC-------------TAAAAACAAGATTTTTTTTTTCGTTATCCGATCTTAAATTATTTCTATTTCAATTCGATTTCTTTC-TTCTTTCTTTGCTTTTT-----TATAGAGTTCCCTCTTTTTTTTTT--CTCATTCAC---------GCCAGTCCAAA-GTGACAAAAGCATGCGACGTGTCTAGAATAAAAAG------------------TGGAATGAGATGGCAAAAAAACGAGCAAAAATGGGAAGAATGAAC-TTTTTTTGTG-------------GGACTCCACA
s cb4.chrX              17394661 277 - 21540570 Ccttgttctcaaaaaattgcaaactaacaaaaaaaacttttt----gttattcGATCTCAAATTATTTCCAtttcaattcaatctttttt-tccatttctctcttttttcatgactccgcttctttgcttttttctcatttttttttcaaacgatCGGTTGGTTCAAATGTGACAAAAACAGGCAGCGTGTGTAGAATAAAAAgcggagaaaaaaagaaaaatataatgaAATGAC-----AATGAGC----------AAAATGAACTTTTCTCTCTGATGACTCCAGGAAGGACTT----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15   188245 223 -  1794024 CCTTGttctca-------------tgaaaaaaacaacttttt----gttatccgatttcaaattatttccatttcaattcaatcttttttctccgtctttttcttttt----------gctttttttttctattttcaattcttttacaGA------GCCGGTTCAAA-GTGACAAAAACAGACAGCGTGTCTAGAATAAAAAG------------------TAGAATGAAGTGAC-----AATGAGcata----agaaaaatgaacttttcttTATG-------------GGACTC----
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    221626 216 +   484378 CCTTGTtctca-------------tgaaaaaaacaactttct----GTTATCCGATCTCAaattatttccatttcaattcaatctttcct----cctcctctcttttt------------tttgcttttttcatttc--ttcttctacttg------gTCAATTCAAA-GTGACAAAAACAGACAGCACGTCTAGAATAAAAAG------------------TAGAATGAAATGAC-----AATgagcaaa---gagaaaaatgaac-tttcttTATG------------AGGACCC----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346582 212 -  4147112 CCTTGTTctca-------------taaaaaaaacaacttttt----gttatCCGATCTCAAattatttccatttcaattcaatctttttt----cattcactcttttt----------gctttttttatttcatttc--tcctttcaCTTG------ATCGGTTCAAA-GTGACAAAAACAGACGGCATGTCTagaataga------------------------aatgaaatgac-----aatgagcaaa---aataaaaatgaacttttctttatG-------------GGACCC----
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18213   472258 870 +   720316 I

a score=78492.000000
s ce10.chrX              2650651 157 + 17718866 CTGGAAACTGCCCC---GTTATACGTGG-----GAGGCGGCA--CAGAAGGGAAAATGG----AAAGAATAAGTGCAACGAAGCGGCAATTGATTCCAATACAAA--------C-TTTTGTGCGACGTCGTCGGGATGATACTAGCAAAAGTCGGAAAAAAAA--CTTGAT------GAATGACGTTG
s cb4.chrX              17394938 175 - 21540570 GCTGAA-----TCCGGGGGTGTACGGGGGCACCGAA-TGGCGGCGACAAGGGcgaatgggaaaaaagaataagtGCAGCGAAGCGACAATTGATTCCAATAGAAACTCTGTCTC-TTTTGTGTATTACT----GGATGATACTACT--CAGTCGAAGGAAAAGGAAGCATAACGTCGACATGACGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   188468 157 -  1794024 TCTGAAACCGCCCCGTTGTTATACGTGG-----GAG-TGAAG--GACAAGGGCAAATGG---AGAAGAATAAGTGCAATGAAGCGACAATTGATTCTACTACAAA--------C-TTTTATGCTTTGCCCCCAGGATGATACTAGT--CGATCGGAAGAAAATGACTC---------AAGTGACGTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    221842 148 +   484378 TCTGAAACCGCCCC---GTTGTACGTGG-----GAG--GGGG--GACAGGGACAAATGG----AAAGAATAAGTGCAGCGAAGCGACAATTGATTCCAATACAAA--------C-TTTTGTGCTCTGCC--CGGGATGATACTAGT--AGGACGGAAGAAATT--CTC---------AAGTGACGTTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346794 142 -  4147112 TCTGAAACAGAA--------GTACGTGG-----GA-----GG--GACAAGGGCGAATGG----AAAGAATAAGTGCAACGAAGCGACAATTGATTCCAATacaaa--------ctttttgtgctccGCC-TTGGGATGATACTAAT--AGGACGGAAGAAATG--CCC---------AAGTGACGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   473128 141 +   720316 -CTGAAAACTGCCC----TTCCACGTAG-----AAG--GGAA--GACAACGGCGAATGG----GAAGAATAAGTGCAGCGAAGCGGCGATTGATTCTAATACAAA--------C-TTCAGTGCCTTCTC---AGGATGATACTAGC--TGCTCGGAAGG------GCG---------GAATGACGTTG
i caeJap4.Scaffold18213 I 870 I 3310

a score=-298.000000
s ce10.chrX              2650808 53 + 17718866 TCTAG---------------ACTAGTTTTAAG---------GTTGT---A-GAGTTCATTAGATCAG------ATTTATAATTTTTT
s cb4.chrX              17395113 86 - 21540570 TCTGGGGCTCGCGGAACTTTACTTCCCCTGAGGACGGGACCCCCGTCCGACGGGGCCACAAGATCAGTgcaagtttttgaactttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   188625 61 -  1794024 TCTGG---------------ACTTCTTTAAAGAACTTGA--GTAGTCAGA-GAGTTCATAAGAtcgg-------ttttcagttttt-
i caeRem4.Crem_Contig15 C 0 I 51
s caeSp111.Scaffold582    221990 76 +   484378 TCTAG-----ACCCCCCTTTGTCATTTTGAGGAACTGAA--GT-TTATAA-GGGGTCACAAGATCAA--CTACTTTTGTACTTTTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3346936 64 -  4147112 TCCGG---------------GCCACTTTGAAGAACTCTA--ATGCTAACA-GGGTTCATAAGATCA-----AGTTCTGTACTTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I

a score=-4753.000000
s ce10.chrX              2650861 33 + 17718866 -----TTGACTACTGTGAAGGCTTCTCTACAAATTCAA
s cb4.chrX              17395199  8 - 21540570 ------------------------------ttgttaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    222066 29 +   484378 AACTTTTGAATGGGTGCA---------TACCAATTCAA
i caeSp111.Scaffold582  C 0 I 126
s caePb3.Scfld02_0       3347000 33 -  4147112 A----TGCAATGAGGTCAA-TTTCATCTTGTAGTTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeRem4.Crem_Contig15   188686 51 -  1794024 I

a score=-6993.000000
s ce10.chrX              2650894 150 + 17718866 AAAAAAGCCGATTCATGCAAAACCATCTTGCAGC-----------ATTTTGAGTTTTTGCAAAAAATTGTGTAGATCACATAGGGAAAACAAAAAAATCTATATAAATAGTGATCTACGCACAATTTTCTGATTTACAACAAAATTTTAAGAATA------AATTTT------
s cb4.chrX              17395207 133 - 21540570 atggAATCAGAAAAGTGGGAAATCATACTGTACTTGAAAATAAGAAGtcggaattc-----aaaaagtattaaGTTCCTGAATGATAGGTTTGAGATTCTATGCGAAG------------TCAatttaataa-----aagaa------aaaaacg------aatttc------
i cb4.chrX              C 0 I 29
s caePb3.Scfld02_0       3347033  86 -  4147112 --------------AAGGAACATCAGATCTCACC----AATGGAGCTTTTGAATTC-------------TCaagtttttgtat-------------------------------------tcaa-------------aagaa------aaaaacactcattGTTTTCTGGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeSp111.Scaffold582    222095 126 +   484378 I
e caeRem4.Crem_Contig15   188686  51 -  1794024 I

a score=-635.000000
s ce10.chrX              2651044 43 + 17718866 GGTCGCACGGGCGAGACTATTTTTTACGAGTGTGGCCCACATA
s caePb3.Scfld02_0       3347119 17 -  4147112 --------------GGATATTCCTTCTAAGT------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e cb4.chrX              17395340 29 - 21540570 I
e caeSp111.Scaffold582    222095 126 +   484378 I
e caeRem4.Crem_Contig15   188686 51 -  1794024 I

a score=-15083.000000
s ce10.chrX              2651087 360 + 17718866 ---------GATTAAATATTTTCAGAACAGCGCATTGGAAAAATGAGCAACATTTTAGCTTCTCTATTTTC-----AAAGAAAAATTAGCTTTTAGCTCAAAGCTTAGGAAAATTGAAAAA-AAATTCGA-AAAAAAATACATTTAAATCAATATTTGATTGAACGAATATTGCCTCGGATTAATTTGCGCGCGAATTTAAATTTAATAACCTTTCAGCCACTTTCGTCAATTTCAAATGCAAAATACTGAATTTTA--ACGGATTGTTGCCGTTTTTCTTCTGTTATATTAGTGAA---TTTTAGCACAAATACTACATTTCAAAACAATTTCCCTATTAAGGAAACTACTTCTTTACTTTCCACGTTAACAAAAATCAA
s cb4.chrX              17395369 229 - 21540570 ---------Aagcaaatttttccag------aaatttgaaaacc-acaaaaatttcgaactgcaaatttttagctcaaaaagaATTTGTAGTTTA--------TTCAGATCcaataaaaaacaaacttAG-AATAAAAGAAA------------------------------------------------Cacaaactaatttttcagaataattcagggaaattcg--------------aaaattcaaaagtttaaaaaaaagtttcg------------------att--gGAA------CAGAATGGAT------TTTATAAAACA------------GGAAACTATGTTTCTCCT---------------------
i cb4.chrX              I 29 C 0
s caePb3.Scfld02_0       3347136 167 -  4147112 GAACAATTAAAACATAATTTCTTGG------GCACTTATCaccc-------atttcaaa-----------------aatgagaaatt--------------------gatcaaatggtcaa-aaactcagtaatata------------------------------------------------------------ttatttttcgatacatttc----------------------------------aaatttatgaCGGATTGTAA------------------ATCTAGGAAATGCtttcgaataaat------tttcaaagtcattT---------GGA------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeSp111.Scaffold582    222095 126 +   484378 I
e caeRem4.Crem_Contig15   188686  51 -  1794024 I

a score=-1922.000000
s ce10.chrX              2651447 11 + 17718866 TCATGAAATTG
s cb4.chrX              17395598  4 - 21540570 TGAG-------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold582    222221 11 +   484378 Ttattgaatta
i caeSp111.Scaffold582  I 126 C 0
s caePb3.Scfld02_0       3347303  9 -  4147112 TTAT--GACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeRem4.Crem_Contig15   188686 51 -  1794024 I

a score=4366.000000
s ce10.chrX              2651458 200 + 17718866 TTTTTAAAAAA-----------------TGTGAAAAAATATCATACGAAATGAGCAAACTTTCCATTTCGATTTGACTGACC----AGAACTCCAA--------TATATTTTGAATTCCCAAGGAGGAACTT--TTGCTAAAATGTTGAGGGGGCA---TCTTCGCGCATTTATCAAACGAATTCACACGAGA--CA--CATAGTTTA--TACAATTTTAAAGGGCGAGAA-------------ATTGA---------TTTT
s cb4.chrX              17395603 161 - 21540570 ----------------------------TCCTATGAAA-ACCT---------------------------------ATATCC----AtttttttGGA--GAGccgaaattggaaattctagaagagGAACTCAGTTTCTCAACGTTGCA-----CATCGTCTTCGCACATTTATCATCTGAATTCTCAGTAAATGCA--AACAGTTAGgttccatttttca-----agaaa-------------aaaagagaaa--------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   188737 190 -  1794024 ----------------------------tctttaaaaa-atccgaaaatgaatgaaatataTT--GTTAAACGGGAAgattc----aatttccaaaaatgagattaaattcgaaattccaaaagaGGAACTTC-TTGCTAAAGTTTTCA-----CA---TATTCACACATTTATCAATTGCATTCACACGAGA--CA--CACAGTTCA--TACATATTTCA-----AAGAA-------------AGTGGAAATAATTC----
i caeRem4.Crem_Contig15 I 51 I 181
s caeSp111.Scaffold582    222232 214 +   484378 ttttcaaaaaaagttagaagGGCATGAAAGTTAAAATA-ATTGGATCATGAAAACAATGTCCTCAGATCG------GTACac----aaagtttcaaa-------tgaatcgAAAACTCGAAAAGAGGAACTTT-CTGCTAGAA-TTGCA-----CA---TCATCACACATTTATCAAACAAATTCACCCGGGA--AATCCATAATTTA--TACATATTTCAC---CAAAAAGTAGACAAGACTCAGTTG-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3347312 184 -  4147112 TTTTCA-------------------TGATGTTGCAAAA-ACTATACTATAAGAAAAATGTTCCCAGTTGA------ATGTTCCATAAAACTTTcgga-------aacatttgaaattccGCAAGAGGAACTTC-TTGCTAAAA-CTGCA-----CG---CTTTCCCACATTTATCAAATGAATTCACCCGAAA--GA--CACAGTTTA--TACATATCTTTC---TAAGAA-------------AGTGG-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I

a score=-23225.000000
s ce10.chrX              2651658 133 + 17718866 --AA-----------------------CTTTTTTTAAATTGCCTT--------TTAAAATGTGGAAAAAGTGACTAAAACTTA--GCTTTTAGTCAAAAGGTAACCGGTTAGCTATCGC-----GTGAAAA------AA-------------------------GACAAAAGTAAGTTAACCATAAAATGACT----------AGAATTTGAAA
s cb4.chrX              17395764  86 - 21540570 aaaa-------------------------------------------------atagtgtacAGAACGG-AGATCAGATGACA-------------------AAtaggctttt-----------ttcagaattatccaA------------------------TTTGCggggtcaaaaaatgaacagaat------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    222446 185 +   484378 --AATCGACGGGGGCACGATGAAATGACGACACTGAGATGGTGTCAGAAAAAGATAGTATAGTGATTCAATGACCCAATTTCACTATT------------ACGATTGGGTGGA----GC-----Ttaagaa------aacgatttttgaccttcttctcatttttttcaaaatcaaaccAAGATCCAAAGGCCACAAGATACTAAATTTTGATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3347496  97 -  4147112 --AA-------------------------------------------------ATAATGTGCAGACTGA---ACTCAACATCA--GTT------------GAAACGGGTCTGA----ACACTGAGTCAGAA------AA-----------------------------AAGATAGTATAGTGAGTGAATGGCC----------TAATTTTAACG
i caePb3.Scfld02_0      C 0 I 129
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeRem4.Crem_Contig15   188927 181 -  1794024 I

a score=380.000000
s ce10.chrX              2651791 7 + 17718866 CTTTACA
s cb4.chrX              17395850 6 - 21540570 -tttgca
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    222631 7 +   484378 GAATACA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3347593 129 -  4147112 I
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e caeRem4.Crem_Contig15   188927 181 -  1794024 I

a score=-14805.000000
s ce10.chrX              2651798 122 + 17718866 AAATGTGTATTT--------TGGTTGAAATC--TTTGAAAACTTAATAATTG------CAATTATTGACAAAACAT--------TCTAAAAGTTT----CCACATGGCA-GTGAACTCTCACAAAATAATAT---TGTAAGCC--ACGCCAAGCTA
s cb4.chrX              17395856 123 - 21540570 aaacaaaaaatttggaataattgctggaatt--tttgaacatttt-------------caaaaatttaagggaagt-----------gatttttc----aaatatggcacaaaaatccaga-aaaactatctaaaagaaacta--aaaaCCGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   189108 154 -  1794024 aaattcatattttcccgT--TTGCTCAAATTAGGctgaattttttctagaataaatAACAACTGTTGAAAGACAGTTGTtatctttctatttttctgctAACTATGAAACATTTCTCCCgataaaaatatattattgcATTCATCAGGCTCAGCAA
i caeRem4.Crem_Contig15 I 181 C 0
s caeSp111.Scaffold582    222638 106 +   484378 ---TTAATTTTGTCTAGGATTTCCTCAAATC--TATGA--------------------Ca----tttaaaaacaatgattttcGTAtagtatttt----aaaaatcgga-aTGACTTCCTATGCAGGT---TACATGCATTTT-------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3347593 129 -  4147112 I
e caeJap4.Scaffold18213   473269 3310 +   720316 I

a score=227.000000
s ce10.chrX              2651920 7 + 17718866 CTTCAAA
s caePb3.Scfld02_0       3347722 7 -  4147112 cataaaa
i caePb3.Scfld02_0      I 129 C 0
e caeJap4.Scaffold18213   473269 3310 +   720316 I
e cb4.chrX              17395979 0 - 21540570 C
e caeSp111.Scaffold582    222744 0 +   484378 C
e caeRem4.Crem_Contig15   189262 0 -  1794024 C

a score=105656.000000
s ce10.chrX              2651927 495 + 17718866  
s cb4.chrX              17395979 434 - 21540570  
i cb4.chrX              C 0 I 498
s caeRem4.Crem_Contig15   189262 426 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    222744 461 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3347729 504 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   476579 470 +   720316  
i caeJap4.Scaffold18213 I 3310 C 0

a score=2527.000000
s ce10.chrX              2652422 5 + 17718866 TTTTA
s caeRem4.Crem_Contig15   189688 5 -  1794024 tttta
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    223205 5 +   484378 ttGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3348233 5 -  4147112 ttggA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   477049 5 +   720316 TTGTA
i caeJap4.Scaffold18213 C 0 I 320
e cb4.chrX              17396413 498 - 21540570 I

a score=-404.000000
s ce10.chrX              2652427 3 + 17718866 TGA
s caeRem4.Crem_Contig15   189693 3 -  1794024 taa
i caeRem4.Crem_Contig15 C 0 I 439
s caeSp111.Scaffold582    223210 2 +   484378 TG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3348238 3 -  4147112 TAA
i caePb3.Scfld02_0      C 0 I 573
e caeJap4.Scaffold18213   477054 320 +   720316 I
e cb4.chrX              17396413 498 - 21540570 I

a score=535.000000
s ce10.chrX              2652430 32 + 17718866 GTAAAACTTATACATCGGGTTTATTATAAATG
s caeSp111.Scaffold582    223212 21 +   484378 -----------ACAGTGGGTActttaaaaatg
i caeSp111.Scaffold582  C 0 I 287
e caePb3.Scfld02_0       3348241 573 -  4147112 I
e caeJap4.Scaffold18213   477054 320 +   720316 I
e cb4.chrX              17396413 498 - 21540570 I
e caeRem4.Crem_Contig15   189696 439 -  1794024 I

a score=0.000000
s ce10.chrX              2652462 1677 + 17718866  
e caePb3.Scfld02_0       3348241  573 -  4147112 I
e caeJap4.Scaffold18213   477054  320 +   720316 I
e cb4.chrX              17396413  498 - 21540570 I
e caeSp111.Scaffold582    223233  287 +   484378 I
e caeRem4.Crem_Contig15   189696  439 -  1794024 I

a score=720.000000
s ce10.chrX              2654139 15 + 17718866 CTAGAAAAAAAAACC
s caeSp111.Scaffold582    223520 15 +   484378 cttgagaaaaaattc
i caeSp111.Scaffold582  I 287 I 5
e caePb3.Scfld02_0       3348241 573 -  4147112 I
e caeJap4.Scaffold18213   477054 320 +   720316 I
e cb4.chrX              17396413 498 - 21540570 I
e caeRem4.Crem_Contig15   189696 439 -  1794024 I

a score=9575.000000
s ce10.chrX              2654154 195 + 17718866 AAAAGA-CAGCTACAAAATGATGGAAAAAGAGTAGAGGATAAATATGAATAATCTATAACATTTTGAGATGC-----TCTCGAGGT----------TTCCTGGTCA--AGCATGGATTTTGGCGGTC---GGTCACGAAA-GAAACAGAACACTA-----------------AGAAATCGAAACG-----GGCGGCAGCACAGAAGTGAAGACAAGAAACGTCAGCACGAGCTTGTCTG
s caeRem4.Crem_Contig15   190135 155 -  1794024 AGGAGA-GAGTCACAAGATG-------ATGAATGATATATTTGGTGGAATATTTTATGACC--CTGAATTGCCCACTGCCGAGAGT----------TTCCTGGTCA--GGAATGGA--TTGACTATCACGAACAAGAAAA-CGAACAGAACGTTGTAATG-------------------GAAACG---GCGCCTGTTGTGTG-------------------------------------
i caeRem4.Crem_Contig15 I 439 I 7
s caeSp111.Scaffold582    223540 180 +   484378 aaaagacTAGTCACAAGATG-------AGGTATTGGATATTTGTTGAAATATTCAATGACC----------------GCCTTTGGTTTAAAAAAGATTCCTGGTCAAGGGAATAGA--TTGGTGGCC--------TGAGACGGAACAGAACATTGAAACGAAAAGCGGAAACAGAAATGGAAACGGGTGCGGCGACGGCGTCG------------------GCAGCacagg--------
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3348814 164 -  4147112 AGAAGACGAGTCACAAGATG-------GAGAGTAGAATATTTGGTGGAATATTCTATCACC----------------GCTTTGAGT----------TTCCTGGTCAA-GGAATGGA--TTGGTGTCC--------TAAGA-GGAACAGAACATTGGAATG-AAAGcggaaacaaaaatggaaaca-----ggCAGTGGCGTTGAA----------------ACGGCACAgg--------
i caePb3.Scfld02_0      I 573 C 0
e caeJap4.Scaffold18213   477054 320 +   720316 I
e cb4.chrX              17396413 498 - 21540570 I

a score=59127.000000
s ce10.chrX              2654349 133 + 17718866 ACAACGGTGA--AGA--CGAAAAAACAAAGAAATGTTTTGTCCTCCCCCCCCCCCCCCTCTCTCTTTTCTTTCTCTCTCATTTTCTGGAAATTCTCTTCTAAATTAACCACCCCCGGGGAGTATGGGCATGAAAATG
s cb4.chrX              17396911 128 - 21540570 ATAAGGGtgaagagaacaaaaaaaacaaagaaatgttttgtttccgctctgccccccccccc---------ctcctcacattttctggaaatgctCGTCTAAATTAACCACCCCCGGGGAGTATGGGCATGAAAATG
i cb4.chrX              I 498 C 0
s caeRem4.Crem_Contig15   190297 103 -  1794024 TTGAAGAAGAAGggg--gaaaaaaacaaagaaatgttttgtttcctCCA--------------------------------TTTCTGGAAATGCTCGTCTAAATTAACCACCCCCGGGGAGTATGGGAATGAAAATG
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    223720  91 +   484378 ------------agg--agaaaaaacaaagaaatgttttgtttctctat--------------------------------tttctggaaattctcGTCTAAATTAACCACCCCCGGGGAGTATGGGCATGAAAATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3348978  90 -  4147112 -------------gg--agaaaaaacaaagaaatgttttgtttccctat--------------------------------tttctggaaattctcgTCTAAATTAACCACCCCCGGGGAGTATGGGCATAAAAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   477054 320 +   720316 I

a score=59110.000000
s ce10.chrX              2654482 79 + 17718866 TGACTTTGGTGCAGTATGTTGCG-----AATTCTT-CGCATTTTAAATTCAATTATGACAACAC--------AAAGAGGG---GGGAAAAAAG--AAG
s cb4.chrX              17397039 82 - 21540570 TGACTTTGGTGCAGTATGTCGCGCAGGAAATTCCCGCGCATTTCAAATTAAATTATGACtgcac--------aaaaaaga---ag-----aggataga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   190400 78 -  1794024 CGACTTTGGTGCAGTATGTCGCG-----AATTCTC-CgcatttcaaattcaattatGACAgcaca----aagaaaaaaga---ag-----agg--aga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    223811 74 +   484378 TGACTTTGGTGCAGTATGTCGCG-----AATTCTC-CgcatttcaaattcaattatgACAgcac--------aaaaaaaa---gg-----aag--agg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3349068 77 -  4147112 TGACTGTGGTGCAGTATGTCGCG-----AATTCTC-cgcatttcaaattcaattatgaaagcac--------aaagaaaaaatgg-----aag--agg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   477374 81 +   720316 TGACTTCGGTGCACAATGTCATG-----AATTCTC-TGCATTTCAAATTTAATTATGGCAGCCCATAAtaagatagaaaa---aa-----aaa--ag-
i caeJap4.Scaffold18213 I 320 I 1671

a score=1564.000000
s ce10.chrX              2654561 271 + 17718866 CTTTT---GCTTTCACGA-------AATGCTGTTGA----GTGGAAAAAATGTAACTGTTGTAATGAGCGAA----ACTTCAT----TTCATATTCTTTTTTCA----TATTCAATCAATCTGATAGCTTTTGTCCAATTTTTTTTCAGATTCTTCTATTCGACTTCATTGACAAAAAACCCAAAAAAAGTTGAAT----CTCTTTTT---------TTGGTGAAT--GAAAA--GAGCACCACC----AAAAATGGAAACCTTTAAAACCCTTCACGGAAGTTGATTGGTGTTGAATTACAAATTATTTTGGAACAA
s cb4.chrX              17397121 194 - 21540570 catttttagttttgacCA-------AAAGTGATGAA----AGGTGGGAAATGAAGTTTCGGACTTGGAACAATTG------------------ACCTTTCgcta----t------------------------------------------ttttt----------------cggaaaat-----ga--aatgtttggGGCTTGTTTTAGG------TTCAGAAAATCGGCAA--GACCACCGCT-----------ACAGCTTTGTGAC-------AGAGACTTGATTGGTATTGAATTACAAATCACCttgggaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   190478 220 -  1794024 caTTT---GGTTTGACCAGTAG-CCAAAGCCGTTAA----GAGTGAAAAATGCAACATGTGAAGAGATAGAATTGAACGAGTG-----TTTTAAtctattctta----t------------------------------------------ttttcaattcaa-------aatgaacaat-----gACTAGTGGGTTGCACCTGTTTT---------TTGACAAGATGGAAAAAGGACCACCACT----------------CTTGGGACCTT--CGAGGAAGTTGATTGGTGTTGAATTACAAATGAATTTGGAACGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    223885 243 +   484378 cATTT---GGTTTGACCAGTAGCCGACGGCTGTTAA----GGATGAGAAATGCAACATTTGAA--GATAGAATTGAACATGAGTGTCTCTCTATTTTATTTCCAGTACTCCTGGTGAGAtataag--------------------------tttttgaaacaa--------aaggaaaGC-----AGCTGCTGAC-----CTTGCT------GAT--CTGACAGGTTTTAGAG--GACCCCC-------TTGCACGAGAAGCTATggcc-----aaaaaaagttgattggTGTTGAATTACAAAtcagttcagaaaaa
i caeSp111.Scaffold582  C 0 I 252
s caePb3.Scfld02_0       3349145 280 -  4147112 caTTT---GGCTTGACCAGTAG-TGAAAGCTTTTAAGAGTGGACAAAAAACGCAACATTTGAA--GATAGAATAGAACATgag----tttttaatttatttcta----TCCTCTTTTGGTAGCAGAac------cctgtttttt------tctttcgaaaaaaccaaaacgaagaaaaat-----gacagcttgt-----cttttttccagggatagttgaaaaattgaaaaa--gaccACCACTCCAAGTTTGAGACAAACTTCAgacctcgaaaaaaaagttgattggtGTTGAATTACAAATCAGTTCAAATACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   477455 1671 +   720316 I

a score=-1307.000000
s ce10.chrX              2654832 7 + 17718866 GAAAAAA--
s cb4.chrX              17397315 7 - 21540570 --caaaaaa
i cb4.chrX              C 0 I 5663
s caeRem4.Crem_Contig15   190698 2 -  1794024 --CA-----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3349425 5 -  4147112 --CAAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e caeSp111.Scaffold582    224128 252 +   484378 I

a score=-1182.000000
s ce10.chrX              2654839 17 + 17718866 GTGGCACCTCGGGAAAA
s caeRem4.Crem_Contig15   190700 16 -  1794024 -TGACAACTCAACAAAA
i caeRem4.Crem_Contig15 C 0 I 1243
s caePb3.Scfld02_0       3349430 12 -  4147112 ----CTCTTGTTCAGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224128 252 +   484378 I

a score=-153.000000
s ce10.chrX              2654856 236 + 17718866 CCGGGAAAACAAAATATTCACGTATGAAGTTTTAGGCAATT----TTTCAATTTTTCAATGTTGGAGCAAA--ACTTGTTTGTTTGCACCAATATTTACAAATGATACTTCAAAAATTCAAAAAAAAAAAGGGGGAAACGTTTACGGTGCTATTTGAAGCATGCGGAGCTTGAATATCGGCAAATAAAATGTAATGATTAACTAATCCAGtacgcaacaaaaaaagttatgaattttgatct
s caePb3.Scfld02_0       3349442 185 -  4147112 TTGAAAAAGCAA------CTCACAAAAAGTTAGAAGAAAATGGGGTTTGGCTTGTTTAATGTTAAAAGAAACGAGTGG------------AACgttgacaaaaaatcattggGAGCGTCAGAATAAA-----GGGAA--------GAAGccattgaa---------------aatatcaaaaaaaaataaacgtttGTCAGTTTGTCTAG-----------ATCAATTATTATTTATGATCT
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224128 252 +   484378 I
e caeRem4.Crem_Contig15   190716 1243 -  1794024 I

a score=0.000000
s ce10.chrX              2655092 51 + 17718866 ggaacgtattGGCACCTTTACTCACTTAGAACTAGTATGTTTTGTTTTTTT
e caePb3.Scfld02_0       3349627 55 -  4147112 I
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224128 252 +   484378 I
e caeRem4.Crem_Contig15   190716 1243 -  1794024 I

a score=-1289.000000
s ce10.chrX              2655143 312 + 17718866 TTTGCTACAAAAATTAAAACAAAAAAAGCTTTTGAAAAACTGACCGAAATTTTTTCTTGGACTTCTTTAATTATGAAAAAAAATTATATGGTTAATTGCGTCACATTCCCCTTTTTCGGAGTTTTTCCGACAAAAACTTAGCCTTATGTGCTGACAAACTTCCAAAAAGGTAGGGTTTtttttgaatattgaaaaaaatttataaaaatagtattcattttttacagttat---atttggtcaccgagggtatgttctatcattcatacaaaaattctgactttacGTTTGTTTTTCATAATGAAAAATATCAAA
s caePb3.Scfld02_0       3349682 221 -  4147112 TTTGTTctcgaaatgaa---gaaaaatgttttt----------------tttttcct---atttttataaattgaaaagaagatta------TTGTCTTTTTATACTGATTCTAACCGGAGATTTTTCG-----------------------TACAGTCGTTCAATATAAt----tacttttggaattttcaaaatgccaTCTAGA--------------TTTACCATtatgaaatatga--aattaaactgtgttctgaaatg-----aaaaattgaagc------------------gaTAAGCAGTTCCAAA
i caePb3.Scfld02_0      I 55 C 0
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224128 252 +   484378 I
e caeRem4.Crem_Contig15   190716 1243 -  1794024 I

a score=7789.000000
s ce10.chrX              2655455 354 + 17718866 -TTGTTTCAG----AAAAAAAAATAGAAAAGTTTATTGAAACTCCTGGTTTTTTGAAAAATTGAAATTGAACCAAAAAAT---TTTAAAGTCAA---------------AATTCATAATT---AATTGCACTTACTTCTGACAATTGAATCATTGAAAGTACATATAAAA------------------ATAAGTTCAATAGCGCGCGAAGTTCTTCAAAAACTAGAAAAATACGTCAAAACGAGATAAAAGAGCTC---TTTTTTGCACAAA-AGCGATTTTGTCGCCTCGCTTCTATTCTATTAATGCACGTTGCCGTTTTGACGAATATTTCGA----AAAGGACA---CAAAA--TAGGAAAGTAAAGGCAAGCGGAAGGGCAAAAATTGG-TGATGGGAACTTTGAAT
s caeSp111.Scaffold582    224380 337 +   484378 -TCgtttgag-atgaaaaaaactcgGAGTTATTtg-------------tcttttcgaaa----------aattaaatagagtttttgagataaa---------------cATTAATTatg---agtttctgaaaatggtaGATATAGTTTCAGCAGaac-aagttcaaaa------------------aataactgaaaaac-ttgaaaactattttgaaactatatGAAGTCACtggaaaatttataaatggAGCG--TTTTTTGCACAAA-ATCGTTTTTGTCGCCTTTATTCTCTATTATTAG-ACACTTTGCCG-TTTGacgaagttttttg-----aagggcATGTaagga--agacaaattgaaaaggaacaaaatgaaaaaaggaggaagctgaaaactttgaat
i caeSp111.Scaffold582  I 252 I 494
s caePb3.Scfld02_0       3349903 379 -  4147112 TTTGTTGGGGAATGTATAGAACATTGA--CATTTGATGGAA-------tccattaaaaa----------aaccaaaaaca---tttga-ataaattcgCCCAACTGTTCCATTaaatttttacagattcaTTCCATACTCAATTTTATCTCTTTCAAAC----TTCAGAACGATATAACCATCTCTTGAGTTGCTCAAGCACATTAAGAACTGCTC--AAGTGCAGAAAAGTCaccgaaaaaagataaaagagaaGGAtttttttGCACAAAGGCCATTTATGTAgcctttcttctcttctattAGTGGACGTTGCCG-TTTGAcgaatattttggaaaaaaagggca---aaagaatagacatgttgaagaggaacaaaatgaagaaagaaggaagctgaaaactttgaat
i caePb3.Scfld02_0      C 0 I 515
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeRem4.Crem_Contig15   190716 1243 -  1794024 I

a score=0.000000
s ce10.chrX              2655809 870 + 17718866  
e caePb3.Scfld02_0       3350282 515 -  4147112 I
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224717 494 +   484378 I
e caeRem4.Crem_Contig15   190716 1243 -  1794024 I

a score=260.000000
s ce10.chrX              2656679 4 + 17718866 ACCG
s caeRem4.Crem_Contig15   191959 4 -  1794024 ACTG
i caeRem4.Crem_Contig15 I 1243 C 0
e caePb3.Scfld02_0       3350282 515 -  4147112 I
e caeJap4.Scaffold18213   477455 1671 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    224717 494 +   484378 I

a score=3161.000000
s ce10.chrX              2656683 13 + 17718866 AAAAGAAACGAGT
s caeRem4.Crem_Contig15   191963  9 -  1794024 ----GGAAAAAGC
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    225211 13 +   484378 aatagaaacgaGC
i caeSp111.Scaffold582  I 494 C 0
s caeJap4.Scaffold18213   479126 13 +   720316 aaaagaaaccagc
i caeJap4.Scaffold18213 I 1671 C 0
e caePb3.Scfld02_0       3350282 515 -  4147112 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=61060.000000
s ce10.chrX              2656696 445 + 17718866  
s caeRem4.Crem_Contig15   191976 417 -  1794024  
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    225224 409 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3350797 442 -  4147112  
i caePb3.Scfld02_0      I 515 C 0
s caeJap4.Scaffold18213   479139 403 +   720316  
i caeJap4.Scaffold18213 C 0 I 2510
e cb4.chrX              17397322 5663 - 21540570 I

a score=47535.000000
s ce10.chrX              2657141 268 + 17718866 CACCACGTTTTTCAAAAATCTTCCGAAATCTATTTCTATTTCGGCAAAGACAAAACG-----------------GGCGAAAGATGATTGTTTTGTTTAGCGGTAGTTGGTTGCTCGGAA--GCTATCGGAAGTTTCTGATGATGCAAACATGTTCTGACAAGAACAACAAAAAAGGCTTGTGAACGAGTCAAAAATTGCTACAGAATATTGATGACGGGTTTTTTTTCAGT--------GCAGGACAACGATGATAAA---------GGACTGCGTTCATTAACATAGAAATTGAAGAGAAAAA
s caeRem4.Crem_Contig15   192393 241 -  1794024 -aagaag---aagaagaaagttttGAGCAGAAGGT---TTTCCCGAAAAACAGGT-------------------TCCGAAAGATGATTGTTGTGTTTGA--------------GTTGAAGCGCTATCGGAAGTTT---GTGATGCAAACATGTTCTGACAAGAA---CCAAAAAGACAAGTGAACGAGGC-ACAATTGCCACAGAATATTGATGTGGGTCTCACTTGAAAA-----------AAGAGTCGA--ATAGA--AATAAATGAAG-GCGTTCATTAGcatagaaattgaaatgaaagg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    225633 270 +   484378 -aagacg----aaagaaaagttttgaagagtAGG----TTCCCGGAATAACAGGACCTCCCTTTCGACTTGCCTCCCGAAAAATGATTGTCGTGTTCCG--------------AAGGAG--GCTATCGGAAGTTT---GTGATGCAAACATGTTCTGACATGAA---CCAAAAAGACAAGTGAACGAGAC-ACAATTGCTACAGAATATTGATGTGAGTTTCAgtgtgaaaagagagagagagagaaacga--atGGATGAATAATTGGGCCGTGTTCATTAAcatagaaattgaaatgagaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3351239 243 -  4147112 -aaaatg----agaaaaacgttttgaagagCATG----TTCTTTGAA----AAGACCTC---------------CCCAAAAGATGATTGTCTTGTTCAA--------------GTAGAA--CCTATCGGAAGTTA---GTGATGCAAACATGTCCTGACAAGAAC--CCAAGAAGGCAAGTGAACACGAG-ACAATTGCTACAGAATATTGATGTGGGGTTTCACTTAAaa--------cgtgaaaaatga--atggg-gaATAATTGGGTCGTGTTCATTAACATAGAAATtgagacgaaaaa
i caePb3.Scfld02_0      C 0 I 661
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=1116.000000
s ce10.chrX              2657409 8 + 17718866 GTGAAAGA
s caeRem4.Crem_Contig15   192634 8 -  1794024 CAAAAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    225903 8 +   484378 gaaaaaga
i caeSp111.Scaffold582  C 0 I 2197
e caePb3.Scfld02_0       3351482 661 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=577.000000
s ce10.chrX              2657417 85 + 17718866 GAAAGAGACAAAACAATGTGGAGAC--TCGATGTTTCGAGCTCATTAGAAAATTCATGTCCTCAGACATTGCATCCTTTTTGAAATT
s caeRem4.Crem_Contig15   192642 72 -  1794024 GAAC--------------TGGCGGTCGCCAACATTCGAACCTCattccaaaattttagttGTCTGACCTTTTATCC-ATTCgaaatt
i caeRem4.Crem_Contig15 C 0 I 377
e caePb3.Scfld02_0       3351482 661 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    225911 2197 +   484378 I

a score=0.000000
s ce10.chrX              2657502 1582 + 17718866  
e caePb3.Scfld02_0       3351482  661 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    225911 2197 +   484378 I
e caeRem4.Crem_Contig15   192714  377 -  1794024 I

a score=419.000000
s ce10.chrX              2659084 8 + 17718866 AGTGAAAG
s caePb3.Scfld02_0       3352143 8 -  4147112 aggaaaag
i caePb3.Scfld02_0      I 661 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    225911 2197 +   484378 I
e caeRem4.Crem_Contig15   192714 377 -  1794024 I

a score=2975.000000
s ce10.chrX              2659092 289 + 17718866 --AAAACTCATGAATAGACATATAAAATGATATGAGAAAAAAGACAA-AGATGTTTGAAAAGGACAACCACTTGTGTCTTAGTTTATTCCGC--------GCCTCTATT------TTTTTCGATACAGAGAGGTGCTC-AAGATTTATGCGGATGAGCACTATGTGGAACATGAGAAAACAAAACAGCTGCTGCTTTTTTTTGAAGCGAAATTGGAGAG--TCGCTCAATCACTCCAA--GATGAAGATCATCGAG----------------------------------------TAAAAAATT----------AGGAGAAAA------------------------------TTC------------------TTTTGt--------------ttttaaataaaattat-tttt--------taCGATTT---------------
s caeRem4.Crem_Contig15   193091 379 -  1794024 AAAACACAGAT---CGGAAATATAGAAtgatatgaagaaaaaaatactaGATGCTTGAAAAGGACAACCCCGTGTGTCTTGCATACTTTAATCGCGGTTTTCTTTTCCTCGTCtttttttCGATA----------CTC-AAGATTTATAAGGATGAGAA-TTTGTGGAACATGAGAGGACT-------------------------CGAAATTGGAGAGCCCCACTCAATCACATCGACGAATGAGC-TATTTGGACTTTGGGAACCAAAAATATTGGAGCTGACACGAACCACAATGAGGAAATTTTGATTGACAGGAGTGGAGAATAATGATGTATTAAGTTCAAT------TCCGTAATGCAAATAG-----TTTTGCAGAAATAAAGCAGACTaaatataaaacaat-tttttggaaacatacGTTTT---------------
i caeRem4.Crem_Contig15 I 377 C 0
s caePb3.Scfld02_0       3352151 368 -  4147112 --catactcat---ataaaatttcaaatgatatgggggaaaaaacaa-agatactTGAAAAGGACAAGCTC--TTGTCCCGCATAATTCCAT----------TTCCAATCG----TTTTCCAATA----------CTTGAGGATATGTTGGAAcaggga--aaaaggaagaaaagagggCTTGA----------------------CGAAATTGGAGAG--CTACCCAATCGCTCCAAAGAATGAGCGCAATTGGA---------------------AGGCCCAAGCGAGTCTAAATAAGCAGTTTTTGATTGACAGGAGTATGGAATAAACATGTATTGAGGCCGATGTttaattcgaaattttgggaGCAACATATTCCGGAAATACTCAGAAATTCATACAAAAAAGCAGTTTTCGTTGCGTATATTGTCAAATGTCACAATAT
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    225911 2197 +   484378 I

a score=25540.000000
s ce10.chrX              2659381 358 + 17718866 --------TCTGGT------------TATTAAAATTATTTTTG----------------------------TTAAATAAACTCACTTCGGACTGTTCCAGAGACAGATCGATTTCAATTGTGGGTTGTTCGAGCATTTTTGTGATATAATTTCTAATCTTTC----ATTTGGTCACACTTCG-------TTTGGTAAAAGTA--AAA---TAAACTAGC------------AATCAGAAC------GCAG------TGGG------GGAACTCTTATTG--ATAATC-------AAGAAAGCAG---TTCACTTCTTACAAATCCACTAGTTAGTCTCACAAATATATGAAAAATCTGC---ATTC--GGCCAGAGACTTGTGCGTCAATCGACAAGAGGATTAAGAT--AATATAAGTCAAGGAAACGATGCACTCCATTATCAACCTTTATCAAGTT--------TTAAAA------------GAAAAT-
s caeRem4.Crem_Contig15   193470 431 -  1794024 GCTTGTACACTGAAAGAacctgatttttttaaaattcccaTTGACTTAAAACTAACAATTCGATATTAAAATGCATACAACTTACCTCAGAATGTTCTGGTGACAGGTGTATTTCTATTGTCGGTTGTTCTAACATCA---TGGAATAA-GTTAGGTGTTTCTAGAA---GTTCACACTGA--------TCAGAATACGCCA--ATAGT-TGTAATACG-----TTAAGAAAATTAGAAC--CCTTTCAA------GAGGAATCTGCGAACACTTTGTATTATAATCAGCAGAGAAAAGAGTAGCAGTTCACTTCTTACAAAT---------------------------AGAATTCACCGGATTTGGGGCAG-GAGTTTGTGCGTCAGTCGATAAGAGGATTAGGATATAACAAAACCCGAGAAAACGATGCACTCAATCAT-AACCtctttgaaatttatattttttatagatttGAATGAGAGGAAAT-
i caeRem4.Crem_Contig15 C 0 I 41
s caeSp111.Scaffold582    228108 355 +   484378 --------TCTGaa------------tcttgaaatt----ttg--------------------------tatttGCATCACTCACCTCAAAATCTTCTGACGACAGGTGAATTTGTATCTCTGGTTGTTCTAACATC-----------------------TC----A---AATCACACTGAATACACGttttgaagagaata--aaaGTGTCGATAATG------------AGCCAGAACGGCACTgcagaattgaaaagaatat-cGAACTCCTATTG--ATAATCAGTCATGAAAAGAGTAGTCTTTGACTTCTTACAAAT---------------------------GGAATTTTCCGCATTT--GGCGGATAGCATGTGCGTCAGTGGACAAGAGGATTAGGAT-------AACTCAAGAAAACGATGTACTCCATTAT-aactt-tttcacttt--tatttttcagaaatctcaaTCTCGAGGAATC
i caeSp111.Scaffold582  I 2197 C 0
s caePb3.Scfld02_0       3352524 403 -  4147112 --------TCAGAA-GAGTTTGTTTCTCCAGAAATG----TTGATCAAATCTTACGAATTCTGAGTACAAAACCACCATACATACCTCAAGTTGTTCTGACGACAAGTGAATTTGTATTGTCGGTTGTTCTATCATTT---TGA--------TAGTTGTATC----A---GGTCACAGTGA--------TCAGAAAACACTAACAAAGTATATACTATggtatcttttcaaaattagaacaGCTTCTTAG-ATTGAATAGAATCA-CGAACTCCTATTG--ATAATCAGCATAGAAAAGGGTag---ttgagttttctgaaat---------------------------agaatTTCC----------GCAGCAAGGATGTGCGTCAATCGACAAAAGGATTAGGAT--AACAGAACTCAAGAAAACGATGTACTCGATTAT-AACTtctttcaactt--cattttttataactttcaATGGT-AGAAATT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=-3269.000000
s ce10.chrX              2659739 27 + 17718866 ATTATAAGATG-GTGATTTTTT--------------TCTACA
s caeSp111.Scaffold582    228463 40 +   484378 AGT-cagaaaa-gtgaattttcagaaaagtcagaaataaatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3352927 36 -  4147112 AGT-CAGAACGTGTGCA-----GGAAATGAGTGGAACCGGAt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeRem4.Crem_Contig15   193901 41 -  1794024 I

a score=48430.000000
s ce10.chrX              2659766 224 + 17718866 TACATAAATATGAAAAATATAGTTTTAAAC--AAAAACGTGTGGGCTGACAAAACAGATG--AGTTGAGTTCTCCTTGAACTC-----TATTCAATTG-AGGTCCTTGGGGAACCAAGTTCTAGGAAAATTGGAACCGACGTGTACATA-------GTTTTTTTAACATTTTAAACATTGAACATCGAAAACACGAAGAAGAATAAGG-TTTTAAAAAATAGAG----AAAAGTGACAAATATGTC
s caeRem4.Crem_Contig15   193942 211 -  1794024 TGGAAAGAAAGGAAACATAtatttagaaac-aaaaaatgagtgggC-GAC--------TA--AGCTAAG-------CGAACTC--TTCTATTCAATTG-TGGTCCTTTGGGAACCAAGTTCTTGGAAAATTGAGGACAGAAAGGAGATG---------CTCTTTaacatttttaaca-aaaagaTC-GAAACGTTGAGAAGATTAGAGTTTCCAAAAAACGGAG--GAAAAAGTGACAAATGTGCC
i caeRem4.Crem_Contig15 I 41 I 454
s caeSp111.Scaffold582    228503 218 +   484378 taaagaaaaacaaagagctatttttcagaagccGGAATGAGTGGGC-GAC--------TGACAGTTAAGTTT--CTTGAACTC--TTTTATTCAATTG-TGGTCCTTTGGGAACCAAGTTCTTGGAAAATTGGGGACACGAAAAGGAGG---------TCTCTTAACATTTTAAACACAAAAGATCGGAAACATTGAGAAgattagag----aagaaaaaggagc-aaaaaagtgacaaatGTGCC
i caeSp111.Scaffold582  C 0 I 583
s caePb3.Scfld02_0       3352963 234 -  4147112 tacagaaaaaggaaacatatttctagaaacgaaaaaatgagtggGC-GAC--------TA--AGTCGTGTTTCACTTGAACTCCACACTATTCAATTGATGGTCCTTTGGGAACCAAGTTCTTGGAAAATTGGGGacgaaaaagagaagtttCCTGGTTCTCTTAACATTTTAAACACAAAAGATCGGCAACATTGAGAAGAttagaa-ttctcaaaactggagcaaaaaaaatgacaaatgagCC
i caePb3.Scfld02_0      C 0 I 1053
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=0.000000
s ce10.chrX              2659990 1651 + 17718866  
e caePb3.Scfld02_0       3353197 1053 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I
e caeSp111.Scaffold582    228721  583 +   484378 I
e caeRem4.Crem_Contig15   194153  454 -  1794024 I

a score=3126.000000
s ce10.chrX              2661641 14 + 17718866 CAAGTTTAAAGATT
s caeRem4.Crem_Contig15   194607 14 -  1794024 CAGATTTAAAGATT
i caeRem4.Crem_Contig15 I 454 C 0
s caeSp111.Scaffold582    229304 14 +   484378 caaatttaaaaatt
i caeSp111.Scaffold582  I 583 C 0
e caePb3.Scfld02_0       3353197 1053 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17397322 5663 - 21540570 I

a score=-9982.000000
s ce10.chrX              2661655 82 + 17718866 CATGAAAACCAAACCAGATCTTTGAATGGACAAAT---------------GAAAAAAAAAGTAAAACTTTTCGAACCTCTTAATATAATCAGATTTA----------
s cb4.chrX              17402985 68 - 21540570 catgaaaaaaa---------------------------------------aacagaaatagacAAATTATTTAAGATTCATTGAATCCTGAATCTGACCCTAGACCA
i cb4.chrX              I 5663 C 0
s caeRem4.Crem_Contig15   194621 83 -  1794024 CATGGAAAcgatac----tttttcaa------aac--------------taaccgAAAACAAATAACAATCAAACACACATTTCCGTATTTGCTTGACGTTAGTCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    229318 87 +   484378 catggATTCGAGAT----TTTCCAAATGGACCAACCACATCCACATTGTCAACAGAACataagaaac-----aaaacagTTTGATAACTCTACAGG-----------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3353197 1053 -  4147112 I
e caeJap4.Scaffold18213   479542 2510 +   720316 I

a score=21722.000000
s ce10.chrX              2661737 60 + 17718866 TCC--------------------TCACTTACCATGTGTAAAGGATGATCCATCAATCCGAATAGAGACAAAAGTGACGTT
s cb4.chrX              17403053 59 - 21540570 TTT--------------------AGACTCACCACATCCCTGGTACGATCCATTAATTCAGCTGGAGAC-AGAGTGACGTT
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig15   194704 77 -  1794024 TTCTGACATAATAATTTCCCGTACGACTTACCATATGTAATGGATGATCCATTGATCAGGCCG--AAC-AAAGTGACGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    229405 52 +   484378 -------------------------ACTTACCACATGTAAAGGATGGTCCATTGATCAGTCCG--AAC-AAAGTGACGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3354250 57 -  4147112 TTT--------------------TCACTCACCACACGTAACGGATGATCCATGGATCCGACCG--AAC-AAAGTGACGTT
i caePb3.Scfld02_0      I 1053 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I

a score=1201.000000
s ce10.chrX              2661797 55 + 17718866 -------TGAAAA------AAAATTCGG---TTTGAATTCACAATTCACTTTCTTCAATATCAGAAA---TTTC--
s caeRem4.Crem_Contig15   194781 64 -  1794024 TT-CAAATGAGATCGCCA-AGAATTGTC-----GGAGCTATT--TTCCGTTTCTCtcaaatcagaat---tttttc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    229457 68 +   484378 TC-GGAGTTGAATAACCAGAAAACTGGA---GAAGGGtctcc--tttcttctcttctaaatCGGAATATGTTTT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3354307 69 -  4147112 TTGGGAATGAAATCACCAGAAAACTAGATGGGGAGGGTTGCT--TTCGCTTTCTCtcaaatcagaat---tttt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I
e cb4.chrX              17403112 55 - 21540570 I

a score=23775.000000
s ce10.chrX              2661852  79 + 17718866 ----------------CAGAGCTCGCTTCCTTGAGC---GACGAAAAACCAAAT-------GCAAACCAC----------------------GAATTAGATGATTCTTGACAGCCCAATGTG----CAAGT
s cb4.chrX              17403167 105 - 21540570 cggatttctttttttcgagaa----------aggGAGAAAACGA-------AAT-GCGC--CCAAAGCACCAAGATTGGCTGGCCCTGGCGCGAATTAGATGATTCTTGACAG--CAATGTG----CAAGT
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig15   194845  78 -  1794024 ----------------cagaa----------tgggCCAAGACGAGAAACC-AAT-GCGCA-CCAAAACGC------------------GCACGAATTAGATGATTCTTGACAG--CAATGTG----CAAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    229525  83 +   484378 ----------------CAGAG----------TGAGC-AAGAGGAAAAACC-AATGGCACAGCCAAAACGC------------------GTTTGAATTAGATGATTCTTGACAG--AGATGGGCGCCCAAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3354376  80 -  4147112 ----------------cagaa----------tgagc-gAGACGAAAAACC-AAT-GCACA-CCAAAACGC------------------GCTTGAATTAGATGATTCTTGACAG--CGATGGG-GCCCAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   479542 2510 +   720316 I

a score=84646.000000
s ce10.chrX              2661931 103 + 17718866 GATGCCCTTTGTTGT---GGCCTAATTGAAGTTTCGGAAGCGAGTA-GCGGATTGGCACCCCAC--AATTC--------GGAGAGGGTGTTTTGACACGATGCTTCTC-TTC--TGCTTC-
s cb4.chrX              17403272 105 - 21540570 GATGCCCTTTGTTGT---GGCCTAATTGAAGTTTCGGAAGCGAGTG-GCAGATTGGCA--CCAC--AATTTTTCGTGTGTGGGA--GTGTTTTGACACGATGGCCCTC-CCC---GCGC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   194923  97 -  1794024 GATGCCCTTTGTTGT---GGCCTAATTGAAGTTTCGGAAGCGAGTA-GCGGATTGGCA--CCAC--AATTC--------TGGGA--GTGTTTTGACACGATGCTCCTCGCCC---GCG---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    229608  98 +   484378 GATGCCCTTTGTTGT---GGCCTAATTGAAGTTTCGGAAGCGAGTA-GCGGATTGGCA--CCAC--AATTC--------TGCGA--GTGTTTTGACACGATGCTCTTC-TCC---GCTCC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3354456 102 -  4147112 GATGCCCTTTGTTGT---GGCCTAATTGAAGTTTCGGAAGCGAGTATGGGGATTGGCA--CCAC--AATTT--------TGGGA--GTGTTTTGACACGATGCCTCTC-CTCAATGCTCC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   482052 103 +   720316 GATGCCCTTTGTTGGCCAGTGCTAATTGACGTTTCGGAAGCGAGTT-GCGGATTGGCA--CCACCAGATTT--------CGGGA--TTGTTTTGACACG-Cgctcttc-tct---tttttc
i caeJap4.Scaffold18213 I 2510 I 1379

a score=11787.000000
s ce10.chrX              2662034 114 + 17718866 TCTCTTATGTGGGCCCC----CT---C---TGTTTTGCCCCCTTTTTCAGCAGCA--GCAGCAACA---------------------------CACTTCAGAA-CAGCAAACTT---------GACGGAAAGA---------------GACCCA---A-------GCTGAAGACGA-TGTCGTTAAGAA
s cb4.chrX              17403377 140 - 21540570 ---CCTCCTTCGGCTCCTCTTCCCCGC---TTTCTTGTggcttttttt-----ca--gcaaaagcAGATGATGATGAGGCACAAGGAGAAATCCACTTCAGAAGCAGAAATCCG---------GACGC--------------------GATTCACCAA-------GTTTTGAAGGAGGAAGGCGACGAA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   195020 119 -  1794024 ---CCGCCTCCGGCCCACGACCC---C---TTTTTCGTGTCTTTTTTC-----CA--GCAGAAACA---------------------------CACTTCAGAA-CAGAAATCCA---------AACAT-GTGATAGACG---------GCTTCACCAA-------GTTGTCGTCGATTGTTGTTGAAAA
i caeRem4.Crem_Contig15 C 0 I 557
s caeSp111.Scaffold582    229706 122 +   484378 TCTCCGCCTCGCGCCTTTCGACC---C---TTTTTTGTGGCCACTTCC-----CA--ACAGCGAGA---------------------------CACTTCAGAa-cagaaatcca---------aaaatggagaagaacg---------GATTCACTTT-------GTCGTAGGCGA-TGTCGTCAAGAA
i caeSp111.Scaffold582  C 0 I 409
s caePb3.Scfld02_0       3354558 152 -  4147112 TCTTCTCCTCACGCCTTTCGACC---CCCGTTTTCCGTGTCTCTTTTC-----GATGGCACCAACA---------------------------CACTTCAGAa-cagaaatccagaaaaatccaaaattgagaagaacggctgctgctgcttctttttttataaagtTGTAGACGA-TGTCGTTGAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   482155 1379 +   720316 I

a score=0.000000
s ce10.chrX              2662148 1 + 17718866 T
e caePb3.Scfld02_0       3354710 0 -  4147112 C
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e cb4.chrX              17403517 3 - 21540570 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=736.000000
s ce10.chrX              2662149 38 + 17718866 TCGTTGAGATTTGAACTAAACCAAATAATATAAAAAAA-------
s cb4.chrX              17403520 43 - 21540570 TTGTTGAGAATCGAACTGAACGCAATA--TTTCAATAAActtgaa
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_0       3354710 25 -  4147112 ----------TCAAACTAAACTTGATA---TGAAATAA-------
i caePb3.Scfld02_0      C 0 I 565
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=881.000000
s ce10.chrX              2662187 124 + 17718866 GATTCTGCGGAATATAGATGTTCACA-AACAAATTTGGGTGAATAAGCTTTTTTTTAAAGATATTTTTTGACTTATTGCtaaaaatgaagtagctctagtggtgaaaatattaagaatagcccta
s cb4.chrX              17403563 103 - 21540570 ga----gagagagagagtcgTTCAAACAATGTATATGGAAAAGAACGGATTTTTTATAAGAcactttttcac--------aaaaat--------tctaat--ttaaaatttgaaaaattgtctca
i cb4.chrX              C 0 I 578
e caePb3.Scfld02_0       3354735 565 -  4147112 I
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=0.000000
s ce10.chrX              2662311 799 + 17718866  
e caePb3.Scfld02_0       3354735 565 -  4147112 I
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e cb4.chrX              17403666 578 - 21540570 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=182.000000
s ce10.chrX              2663110 2 + 17718866 AA
s cb4.chrX              17404244 2 - 21540570 AA
i cb4.chrX              I 578 C 0
e caePb3.Scfld02_0       3354735 565 -  4147112 I
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=1207.000000
s ce10.chrX              2663112 13 + 17718866 GATCTGA--TGGATA
s cb4.chrX              17404246 11 - 21540570 AATCT----TAGATA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3355300 15 -  4147112 GATCTAAGCTGGATA
i caePb3.Scfld02_0      I 565 C 0
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e caeSp111.Scaffold582    229828 409 +   484378 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=-1463.000000
s ce10.chrX              2663125 136 + 17718866 TAAAACCGCTAAGAAGCTTT-TCAAAGACGTAAATCACTATTCCTGTTCACAGACGCACCATATATCAAGATAAATACAGATTAAAGGAGAGCACTTATTGATGCATCTT----CTACACATATT----CCGAACTTTG-----GAATCA---------------------------------
s cb4.chrX              17404257 140 - 21540570 -AGAACTGTTAAGAAGATTTGGAGAAGACGCATGTTC----TGTCATCCCAACAAGCATCAAATATCAGGAT---------------GAGCA---TTATCCA--AATCTT----AAAAAGATC------GAGAACATCG-----AGTTCATCAAGCATTCTGAGCTCACAGAAGAACTCA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    230237 142 +   484378 TAGAACTGTTAAGTAGATTT-CATAAGACGCAAGTCATCAATTTCATCCCGAGAAGCATCAAATATCAAAGTTACTT----------AAGAA----TATTTAAGAATTATCCAGAAAGCTGTCTT----GTGAT----------AGGTC---------TCTCAAA---ACTGAGAACCCAGAA
i caeSp111.Scaffold582  I 409 C 0
s caePb3.Scfld02_0       3355315 172 -  4147112 -AGTACAGTAAAGAAGATTT-GTAAAGACGCAAACGATTAGTTATGTCCCCAGATGCATCAAATATCGAGTTATCTt-ggatc----aaaaataattatctaGGAATTat----aaaatggttttgaaagtGATATTCGAATGAAGTTCATCTTTAATTCTCAGACTGAGTGAAATGCTATaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   482155 1379 +   720316 I
e caeRem4.Crem_Contig15   195139 557 -  1794024 I

a score=2827.000000
s ce10.chrX              2663261  9 + 17718866 -CAAATCAAT
s cb4.chrX              17404397  9 - 21540570 -AAAGTCAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   195696  9 -  1794024 -CGAGtcgat
i caeRem4.Crem_Contig15 I 557 C 0
s caeSp111.Scaffold582    230379 10 +   484378 CAAAttcaat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3355487 10 -  4147112 aaaactaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   482155 1379 +   720316 I

a score=42254.000000
s ce10.chrX              2663270 152 + 17718866 GGCAAGAAACA----GAACGTTCCCAAAAACATATACATATATT-GTGCACATAAAAAAGCACAGCACAAAAAACCATT-CTGGCGAGGTTCTTCGCATTC-ACAGAAAA-GTCAAAAAAAAACTT-------GGCGGCCCCATGAGAATCCGATTCTGTTCAAACA
s cb4.chrX              17404406 121 - 21540570 AGAGAAAAGAC----GAAAATCTTATATTTTCCTC-TCCTCTTG-GTCC---------AAAAAAGCCGGAAAAACCATT--------------------------CGAAGCATC-----AAAACTTGAGGGTGGGTGGCCCCAAGAGAGTCCAATTCCAATCGAACA
i cb4.chrX              C 0 I 1198
s caeRem4.Crem_Contig15   195705 131 -  1794024 agaaaaaaaga----atgaatctCAAAACATCCAT-CTTATGTG-GTTC---------AACAC-----GAGAAACCATTTCT---ATGTCTGGTCGACTAC-GCACAAAACGTC-----AAAACTT-------GGTGGCCCCATGAGAGTCCGATTTCATTTGAACA
i caeRem4.Crem_Contig15 C 0 I 268
s caeSp111.Scaffold582    230389 139 +   484378 gtgaaaaaaaccggcaaaaatctcaaaacatCCAT-CTTATTTT-GTTC---------AACAAAATGTGAGAAACTATT-CA---GACACTTTTCGGCTAC-ACATAAAACGTC-----AAAACTT-------GGTGGCCCCATGAGAGTCCCATTCCATTTGAACA
i caeSp111.Scaffold582  C 0 I 272
s caePb3.Scfld02_0       3355497 131 -  4147112 acaaaaa--------aagaatctcaaaacaaccat-tttgtcttggttc---------aaaaaaacGGGA-AACCCATT-CA---GACTCTTTTTGGTTAC-ACATAAGGCATC-----AAAAATT-------GGTGGCCCCATGAGAGTCCAATTCTATTTGAACA
i caePb3.Scfld02_0      C 0 I 598
s caeJap4.Scaffold18213   483534 139 +   720316 gggaaaaacca----aaaaatctcCAAACATCCAT-CTTATTTT-GGCT---------TTAAACAAGAGACAAACCATT-CTCGTGGTTCACCCCACCCATAAAACAAAACGTC-----AAAACTT-------GATGGCCCCATGAGATTTCATTTCCGTTGGAACA
i caeJap4.Scaffold18213 I 1379 I 92

a score=0.000000
s ce10.chrX              2663422 655 + 17718866  
e caePb3.Scfld02_0       3355628 598 -  4147112 I
e caeJap4.Scaffold18213   483673  92 +   720316 I
e cb4.chrX              17404527 1198 - 21540570 I
e caeSp111.Scaffold582    230528 272 +   484378 I
e caeRem4.Crem_Contig15   195836 268 -  1794024 I

a score=819.000000
s ce10.chrX              2664077 9 + 17718866 aaaaaaaat
s caeJap4.Scaffold18213   483765 9 +   720316 aaaaaaaat
i caeJap4.Scaffold18213 I 92 C 0
e caePb3.Scfld02_0       3355628 598 -  4147112 I
e cb4.chrX              17404527 1198 - 21540570 I
e caeSp111.Scaffold582    230528 272 +   484378 I
e caeRem4.Crem_Contig15   195836 268 -  1794024 I

a score=1149.000000
s ce10.chrX              2664086 17 + 17718866 aaaaaaataaaaaaaca
s cb4.chrX              17405725 17 - 21540570 aacaaaacagaaaaaaa
i cb4.chrX              I 1198 C 0
s caeJap4.Scaffold18213   483774 17 +   720316 tttgaaacagcaataga
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3355628 598 -  4147112 I
e caeSp111.Scaffold582    230528 272 +   484378 I
e caeRem4.Crem_Contig15   195836 268 -  1794024 I

a score=-2469.000000
s ce10.chrX              2664103  7 + 17718866 aaaa---------TTG--------
s cb4.chrX              17405742 16 - 21540570 gaaactggtTTCTTGA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   196104  7 -  1794024 AAAA---------TAA--------
i caeRem4.Crem_Contig15 I 268 C 0
s caeJap4.Scaffold18213   483791 14 +   720316 -aaa---------tatttcaattc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3355628 598 -  4147112 I
e caeSp111.Scaffold582    230528 272 +   484378 I

a score=183530.000000
s ce10.chrX              2664110 231 + 17718866 ACTGACCTCCTCATCGCTAACCAAAAACTC---TGTTGCTCCAATCGATACCCGCGCGTTATAGCTGACGTGTGCAAAATGTTGATCCTCGATCAAAGTTGGCATTGATCTTGCTATTGAGTTTGCTTGGCTTTTTTGCTGATACCGTTTGTGCTTTTTGTACCTTCTTTCGTAGGGGCACGACACTTGGTCGGCCAAACGAAGTGCATCAATAATCGACTGCGTTGGCTGAAA
s cb4.chrX              17405758 231 - 21540570 ACTAACCTCTTCCTTCTCAACATAAAGATCGCTGGTTGCCCCAATTGACTTTCTCGGAGCATTATTGAATACTGGAATCTTCTTATCCTCAATCAATGTTGGCATAGATCTAGCGATGGAGCTTCTTTGGGTTCGT---TGGTACCTCGTGTTCTTCTTGTACCTGCGTTCGTATGGGCACGACACTTGGTCGGCCAGACGGAGAGCATCGATAAGGGACTGCGTTGGCTGAAA
i cb4.chrX              C 0 I 102
s caeRem4.Crem_Contig15   196111 228 -  1794024 ACTGACCTCTTCATCATTAACCAAGAAGTC---GGTTGCTCCGATCGAAACCCGCGGAGCATAACTGGTGACGGGAAACTTTTTATCTTCAATCAGTGTTGGCATTGACTTGGCGATAGAGTTCCTTTGTGGTTTT---TGGTACTTCCTGTTCTTTTTGTACCGTCTTTCGTAGGGGCACGACACTTGGTCGGCCAGACGGAGAGCATCTATAAGGGACTGCGTTTGCTGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    230800 227 +   484378 ACCCACCTCTTCATCGTTGACCAAAAAGTC---GGTGGCTCCGATTGAAACCCGAGGAGCATAATTAGCAACAGGAAAGTTTTTGTCTTCAGTTAATGTTGGCATGGATCTTGCAATCGAGCTTCTTGGATTTCTT---TGGTAccttttgttctttttgtaCCGTTTCTCGTAAGGGCACGACACTTGGTCGGCCAAACGAAGAGCATCGATAAGCGACTGCGTTTGCTGAA-
i caeSp111.Scaffold582  I 272 C 0
s caePb3.Scfld02_0       3356226 227 -  4147112 ACTGACCTCTTCATCATTAACCAAAAACTC---GGTGGCACCAATTGACACTCTTGGTGCATAACTGGCAACCGGAAACTTCTTATCTTCGATTAATGTTGGCATAGATCTTGCAATTGAGTTTCTTTGTGGCCTT---TGGTACCTTTTGTTCTTCTTGTACCGTCGCTCGTATGGGCACGACACTTGGTCGGCCAAACGAAGAGCATCGATAAGGGACTGCGTTTGctgaa-
i caePb3.Scfld02_0      I 598 C 0
s caeJap4.Scaffold18213   483805 228 +   720316 acCAACCTGATTATCATTGTCcagaaaatc---atttgaaccaACTGACTTTCTGGGCGAATACTTGGCAAACGGAAAGCATTTGTCTTCAATTAATGTCGGCATGGATCGAGCAATTGAATTTGGCTGATTCTTC---TgatactttttgttttttttgtaccGTCGCTCGTAGGGGCACGACACTTGGTCGGCCAACCGGAGTGCATCGATAAGCGACTCCGTTTGCTGAAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-1375.000000
s ce10.chrX              2664341 17 + 17718866 ATC-------------------------AATAAATATTTTTA
s caeRem4.Crem_Contig15   196339 42 -  1794024 GTAATTTATAAGGGACTGCGTTTTGCTGAAagaaatttcttt
i caeRem4.Crem_Contig15 C 0 I 40
s caeSp111.Scaffold582    231027 14 +   484378 ----------------------------CCAGAACATTCATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3356453 14 -  4147112 ----------------------------caaaaacattcatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   484033 14 +   720316 ----------------------------AAgaaatgtttttc
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17405989 102 - 21540570 I

a score=-4395.000000
s ce10.chrX              2664358 28 + 17718866 -----------------CTAGCATTGGATCAACCCATGGACCAAA
s caeSp111.Scaffold582    231041 17 +   484378 -----------------ATTg--tggga---------agaagaag
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3356467  9 -  4147112 -----------------attg-------------------acaaa
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   484047 29 +   720316 ttcaaagatttttttaaattg----------------taaaGAAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17405989 102 - 21540570 I
e caeRem4.Crem_Contig15   196381 40 -  1794024 I

a score=-3828.000000
s ce10.chrX              2664386 33 + 17718866 AAAACCGATGTTATAACTGAGATGGTTCAGAAT
s caeRem4.Crem_Contig15   196421 25 -  1794024 aaaaaaaatgt-----tgagaatgATCGAG---
i caeRem4.Crem_Contig15 I 40 C 0
s caeSp111.Scaffold582    231061 29 +   484378 aAAGAGAGtatgac--aaaaaatgatagaaa--
i caeSp111.Scaffold582  I 3 I 5
s caePb3.Scfld02_0       3356479 31 -  4147112 aaagagaacatgacaaaaaaaatggtagaaa--
i caePb3.Scfld02_0      I 3 I 2
s caeJap4.Scaffold18213   484076 17 +   720316 --GGAGCTTGT-----TAATGCTG---------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17405989 102 - 21540570 I

a score=29375.000000
s ce10.chrX              2664419 78 + 17718866 AGAATAGCTGAGA-TGAGCAAAAAATGA----------ACAATGAATGGAATTCGGGTGTCAACA---CAACTTTTAAATGCATAATAATGG
s cb4.chrX              17406091 66 - 21540570 aaaaaaGCTAAGA-TGAGCAGAAACC-A----------GAAACGCG------TCGGATGT--------CAACTTTCAAATGCATAATGATGG
i cb4.chrX              I 102 C 0
s caeRem4.Crem_Contig15   196446 71 -  1794024 ---ACAGTTGAGA-TGAGCAAGAAGC-A----------GAAAAGCA------TCAGATGTCAACAAAACAACTATTAAATGCATAATGATCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231095 58 +   484378 ATCGAAGTTGAGA-TGAGCAAAAAGC------------------------------ATGTCAATA---CAACTTCCAAATGCATAATGATGG
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3356512 66 -  4147112 ------gttggga-tgagcaaaaagcaa----------aaaaagca------ttGGATGTCAATA---CAGCTTTCAAATGCATAATGATGG
i caePb3.Scfld02_0      I 2 I 160
s caeJap4.Scaffold18213   484093 76 +   720316 AAAATAGgagaaagtggaaaaaaagttatttgaCTTCTAGAAGGCG----------GTGTCAATA---CAACTTTCAAATGCATAATGA---
i caeJap4.Scaffold18213 C 0 C 0

a score=-641.000000
s ce10.chrX              2664497 10 + 17718866 CGTAGAACTC
s cb4.chrX              17406157 10 - 21540570 GGAAGGGGTC
i cb4.chrX              C 0 I 152
s caeRem4.Crem_Contig15   196517  6 -  1794024 CTTTGA----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231153 10 +   484378 GCTAGAACTC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   484169  8 +   720316 --TAGAACTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3356578 160 -  4147112 I

a score=452.000000
s ce10.chrX              2664507 3 + 17718866 GCA
s caeRem4.Crem_Contig15   196523 2 -  1794024 -CA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231163 3 +   484378 AAA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   484177 3 +   720316 GCA
i caeJap4.Scaffold18213 C 0 I 183
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e cb4.chrX              17406167 152 - 21540570 I

a score=-614.000000
s ce10.chrX              2664510 12 + 17718866 TCCTAGATGTTT-
s caeRem4.Crem_Contig15   196525 12 -  1794024 AGCTAGAT-CTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231166 12 +   484378 GTCCGGATGCTT-
i caeSp111.Scaffold582  C 0 I 64
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I

a score=795.000000
s ce10.chrX              2664522 54 + 17718866 GGTTTCGC-CAT-----TTTTGACAGGGAATCA---ACAATATATTAGAAAAAAGTGAGAAAT
s caeRem4.Crem_Contig15   196537 63 -  1794024 AAGTCCGCATATGGGTGTTTTATCAGGAAAATATGGACAATatatcttgaaaaaagaaggaat
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I
e caeSp111.Scaffold582    231178 64 +   484378 I

a score=0.000000
s ce10.chrX              2664576 730 + 17718866  
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I
e caeSp111.Scaffold582    231178  64 +   484378 I
e caeRem4.Crem_Contig15   196600   0 -  1794024 C

a score=333.000000
s ce10.chrX              2665306 5 + 17718866 AAAAA
s caeSp111.Scaffold582    231242 5 +   484378 aaaga
i caeSp111.Scaffold582  I 64 C 0
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I
e caeRem4.Crem_Contig15   196600 0 -  1794024 C

a score=-1985.000000
s ce10.chrX              2665311 57 + 17718866 -AAAAGTAAGTGAATTGTTTGTTATA-----ACAAACATAACATTA--------ATGCTCTTT-----AAAGCAA--T
s caeRem4.Crem_Contig15   196600 74 -  1794024 -aaaaGTGAATGAACTGATcgtttcatttccagaaacagaaaaatgggggaaGGAGGTCCTTCTTCTTGATACAA---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231247 49 +   484378 caa-----aataaACTGATCGTGTCTTATCCTGCAA------------------AGGCCTTTC-----AAAACagac-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3356578 160 -  4147112 I
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I

a score=412.000000
s ce10.chrX              2665368 11 + 17718866 --GAGCATGTTCA
s caeRem4.Crem_Contig15   196674  9 -  1794024 GAGAacgtt----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231296 11 +   484378 --aaacatttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3356738 11 -  4147112 --GAACATATTTG
i caePb3.Scfld02_0      I 160 C 0
e caeJap4.Scaffold18213   484180 183 +   720316 I
e cb4.chrX              17406167 152 - 21540570 I

a score=-375.000000
s ce10.chrX              2665379 13 + 17718866 TTGAAAAAAAGGA
s cb4.chrX              17406319 13 - 21540570 TTGCGGGAAAAGC
i cb4.chrX              I 152 C 0
s caeRem4.Crem_Contig15   196683 13 -  1794024 ttgagagaaatgc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231307 11 +   484378 -ctgtgcaAA-GC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3356749 12 -  4147112 -TGACGAAgacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   484180 183 +   720316 I

a score=66908.000000
s ce10.chrX              2665392 85 + 17718866 AACGGAAAAATGTCGTGTCTGGAAGTGAACCATAAAATGCTCAGTT-TTCGCACAGATGGTGTCACGGCGACACAAACAGAACATG
s cb4.chrX              17406332 84 - 21540570 AACGGAAAAATGGCGTGTCTGGAAGTGACCCATAAAAGGCTCAGTT-TTCGCACAGATGGTTTTACGACCG-GAAAACAAAACATG
i cb4.chrX              C 0 I 432
s caeRem4.Crem_Contig15   196696 85 -  1794024 AACGGAAAAATGTCGTGTCTAGAAATGGACCATAAAAGAAGCAGTT-TTCGCACAGATGGTTTTACGACCACCAAAACAAAACATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    231318 85 +   484378 AACGGAAAAATGTCGTGTCTGGAAGCAGACCATAAAAGACTCACTTCTTCGCACAGATGATTTTACGAccg-gaaaacaaaacatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3356761 84 -  4147112 aacggaaaaatgtcGTGTCTGGAAAAGGACCATAAAAGACCCAGTT-TTCGCACAGATGGTTTTACGAccg-gaaaacaaaacatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   484363 71 +   720316 AACGGGAAGA-----TGTCTGGAA-----CCATAAAAAGCCGTTTT-TGCGCATAAATGGTTTTACGAGCA--AAAACAACGCC--
i caeJap4.Scaffold18213 I 183 C 0

a score=3641.000000
s ce10.chrX              2665477 8 + 17718866 TAAATGGA
s caeRem4.Crem_Contig15   196781 8 -  1794024 TAAGCAGA
i caeRem4.Crem_Contig15 C 0 I 419
s caeSp111.Scaffold582    231403 8 +   484378 taaaTCGA
i caeSp111.Scaffold582  C 0 I 757
s caePb3.Scfld02_0       3356845 8 -  4147112 caAATGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   484434 8 +   720316 GAAACAGA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17406416 432 - 21540570 I

a score=-128.000000
s ce10.chrX              2665485 1 + 17718866 G
s caePb3.Scfld02_0       3356853 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   484442 1 +   720316 G
i caeJap4.Scaffold18213 C 0 I 14521
e cb4.chrX              17406416 432 - 21540570 I
e caeSp111.Scaffold582    231411 757 +   484378 I
e caeRem4.Crem_Contig15   196789 419 -  1794024 I

a score=393.000000
s ce10.chrX              2665486 59 + 17718866 AC----TTGCTTAGTGAACACAACCCAGTTCTAAAAATATAACTGGAATGCAAAATGTGAAAT
s caePb3.Scfld02_0       3356854 58 -  4147112 CCAATGTTGCccgatgaaaaaaacatg-----aacgCTGTGATTTGAAAGCAGAAAATGAcat
i caePb3.Scfld02_0      C 0 I 1524
e caeJap4.Scaffold18213   484443 14521 +   720316 I
e cb4.chrX              17406416 432 - 21540570 I
e caeSp111.Scaffold582    231411 757 +   484378 I
e caeRem4.Crem_Contig15   196789 419 -  1794024 I

a score=0.000000
s ce10.chrX              2665545 678 + 17718866  
e caePb3.Scfld02_0       3356912 1524 -  4147112 I
e caeJap4.Scaffold18213   484443 14521 +   720316 I
e cb4.chrX              17406416 432 - 21540570 I
e caeSp111.Scaffold582    231411 757 +   484378 I
e caeRem4.Crem_Contig15   196789 419 -  1794024 I

a score=2181.000000
s ce10.chrX              2666223 56 + 17718866 GACAAAAAAATTCTGAGAAAAAGAG--CGAAGTGTTTGTTCAAATATGGGGAAAGGGC
s caeSp111.Scaffold582    232168 54 +   484378 gataaaaaaa----gaagaaactagATAGAAATGTTCGtttagctgaaaataaatgag
i caeSp111.Scaffold582  I 757 C 0
s caePb3.Scfld02_0       3358436 50 -  4147112 --gagaaaaa----aactcaactga--aaaaaagttcgttAAGCTGAAAATAAGTGAG
i caePb3.Scfld02_0      I 1524 C 0
e caeJap4.Scaffold18213   484443 14521 +   720316 I
e cb4.chrX              17406416 432 - 21540570 I
e caeRem4.Crem_Contig15   196789 419 -  1794024 I

a score=-717.000000
s ce10.chrX              2666279 5 + 17718866 --TCTTA
s cb4.chrX              17406848 5 - 21540570 TTTTC--
i cb4.chrX              I 432 C 0
s caeSp111.Scaffold582    232222 5 +   484378 acTCC--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3358486 5 -  4147112 ACTCC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   484443 14521 +   720316 I
e caeRem4.Crem_Contig15   196789 419 -  1794024 I

a score=6653.000000
s ce10.chrX              2666284 10 + 17718866 TAACATGAAA
s cb4.chrX              17406853 10 - 21540570 TAACACAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   197208 10 -  1794024 TAACATAAAA
i caeRem4.Crem_Contig15 I 419 C 0
s caeSp111.Scaffold582    232227 10 +   484378 TAACATGAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3358491 10 -  4147112 TAACATGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   484443 14521 +   720316 I

a score=76425.000000
s ce10.chrX              2666294 112 + 17718866 T--GACTGG-AAACATGACGACATTGGCGGATGCGAG-ATTGCCGTTAAAGAACT----CGCATCGGAAATCGGCCAACGCAGATCTATGAATACTAATTTTCACCTTAGAACGAGTTTT-
s cb4.chrX              17406863 111 - 21540570 TAAGACTGG-AAACTTGACGACATTGGCGGATGCGCGCTTCGTTCTTTAAGAGCTCACGCGCAACGGAAACTGG-------CGATCCATGAATATTAATATTCACCTTG-ACCGAGACTT-
i cb4.chrX              C 0 I 4262
s caeRem4.Crem_Contig15   197218 112 -  1794024 T--GACTGG-AAACATGATGACATTGGCGGATATGCCTCCAGTTTTCCAAGAGCTCACGCGCATCGGAAATCGAGCAACGCAGATCCATGAATATTAATTCTCACCT-----CAAAATGT-
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    232237 112 +   484378 C--GACTGG-AAACATGACGACATTAGCGGATGCGC--TCAGTTCTTCGAGAGCTCACGCGCATCGGAAATCGGCCAACGCAGATCCAtgaatattaattttcacCTTG---CAAGTCTT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3358501 112 -  4147112 T--GACTGG-AAACATGACGACATTTGCGGATGCGC--TCAGTTCTCTTGGAGCTCACGCGCATCGGAAATCGGCCAACGCAGATCCATGAATATTAATTTTCaccttg---aacatttt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   498964 115 +   720316 T--GACTGGAAAAAATGACGACATTAACGGATGCGCAggcacgcgcgcaaaagaT----CGCATCGGAAATTGTCCAGAGCCGATCCATGAATATTAATTCTCACCTTAAAAAGAGTCATT
i caeJap4.Scaffold18213 I 14521 C 0

a score=1868.000000
s ce10.chrX              2666406 4 + 17718866 CCAT
s caeRem4.Crem_Contig15   197331 3 -  1794024 -TGT
i caeRem4.Crem_Contig15 I 1 I 1
s caeSp111.Scaffold582    232349 4 +   484378 TCAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3358613 4 -  4147112 tcat
i caePb3.Scfld02_0      C 0 I 351
s caeJap4.Scaffold18213   499079 4 +   720316 TCAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17406974 4262 - 21540570 I

a score=220.000000
s ce10.chrX              2666410 2 + 17718866 AT
s caeRem4.Crem_Contig15   197335 2 -  1794024 GT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    232353 2 +   484378 CT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   499083 2 +   720316 GT
i caeJap4.Scaffold18213 C 0 I 1094
e caePb3.Scfld02_0       3358617 351 -  4147112 I
e cb4.chrX              17406974 4262 - 21540570 I

a score=329.000000
s ce10.chrX              2666412 2 + 17718866 CC
s caeRem4.Crem_Contig15   197337 2 -  1794024 TC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    232355 2 +   484378 TC
i caeSp111.Scaffold582  C 0 I 372
e caePb3.Scfld02_0       3358617 351 -  4147112 I
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I

a score=763.000000
s ce10.chrX              2666414 125 + 17718866 GTCTCGCTTCTAGTTCGGAAAAGATTCA-----TATTTCTA--TTAACACAATTTCAGGTCAAAATGTAATGC--------GATATATTATGATACATATTAGAAGAACTTTTA----------TTTATTTTTCTGAGCTAATAATTAAT
s caeRem4.Crem_Contig15   197339 146 -  1794024 GTTCAGATTTT-GTTCGTCAAATATTTAGGTTGTTTTTCTAGTTTAGAACAAGT--ATGACACAGCGAAATGCGGAAAAATGGTAAATTAAAACA-ATGTAATGAAATTCTTTAAAGTtactatttcatttttttgatcaaTCGAATAAT
i caeRem4.Crem_Contig15 C 0 I 1620
e caePb3.Scfld02_0       3358617 351 -  4147112 I
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I
e caeSp111.Scaffold582    232357 372 +   484378 I

a score=0.000000
s ce10.chrX              2666539 6143 + 17718866  
e caePb3.Scfld02_0       3358617  351 -  4147112 I
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I
e caeSp111.Scaffold582    232357  372 +   484378 I
e caeRem4.Crem_Contig15   197485 1620 -  1794024 I

a score=100.000000
s ce10.chrX              2672682 1 + 17718866 G
s caePb3.Scfld02_0       3358968 1 -  4147112 G
i caePb3.Scfld02_0      I 351 C 0
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I
e caeSp111.Scaffold582    232357 372 +   484378 I
e caeRem4.Crem_Contig15   197485 1620 -  1794024 I

a score=1152.000000
s ce10.chrX              2672683 22 + 17718866 AAAC-------TTTTACGATGTTGCCTTG
s caeSp111.Scaffold582    232729 29 +   484378 aaactttttggttttgcATCTGTGAAGTG
i caeSp111.Scaffold582  I 372 C 0
s caePb3.Scfld02_0       3358969 22 -  4147112 AAAC-------TTTCACATATTTGAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I
e caeRem4.Crem_Contig15   197485 1620 -  1794024 I

a score=30052.000000
s ce10.chrX              2672705 746 + 17718866  
s caeRem4.Crem_Contig15   199105 638 -  1794024  
i caeRem4.Crem_Contig15 I 1620 C 0
s caeSp111.Scaffold582    232758 574 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3358991 671 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   499085 1094 +   720316 I
e cb4.chrX              17406974 4262 - 21540570 I

a score=7095.000000
s ce10.chrX              2673451  78 + 17718866 ----------ATCTCATTAAGA-------CCTGAAACAAAAGACAAAACTAGAGATGGGAGTG-----GAATCTGGG-----ACCACAC-----------AACTTCTCTC-------AATTCC
s cb4.chrX              17411236 103 - 21540570 -------atcgCATTAGTCGGA-------TTGAAGGCGAACGACAAGACTAGAGATACCACTGGTGGTGCACTTCTACCAGCACCCGAaacttcttcgtcttcttcttct------ccattct
i cb4.chrX              I 4262 C 0
s caeRem4.Crem_Contig15   199743  74 -  1794024 ------------ATCATCAAAA-------CTAAAGACGAAAGACAAGACTAGAGATACCA--------GAATTTCAA-----ATCAGAA-----------CTCTACTTCC------AAGTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    233332  85 +   484378 AAAAAGGATAGAATCAGTGTGA-------CAAAAGACAAAAGACAAGACTAGATATACTA--------AAACT------------AGAA-----------CTCTACTCTTCCCCCCGAATTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3359662  88 -  4147112 AAAA--GTTGGAATCATTGTGACAAGAGGCAAAAGACAAAAGGCAAAACTAGATATACGA--------AAACTTTGA-----ACCAGAA-----------CTCCACTcct---------ttct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   499085 1094 +   720316 I

a score=493097.000000
s ce10.chrX              2673529 528 + 17718866  
s cb4.chrX              17411339 556 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   199817 521 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    233417 529 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3359750 530 -  4147112  
i caePb3.Scfld02_0      C 0 I 100
s caeJap4.Scaffold18213   500179 530 +   720316  
i caeJap4.Scaffold18213 I 1094 C 0

a score=-4838.000000
s ce10.chrX              2674057 17 + 17718866 TTCCCCTCAAATTTTCA-
s cb4.chrX              17411895 12 - 21540570 -----CACTGGTCAtct-
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig15   200338 12 -  1794024 -----caccaatgttca-
i caeRem4.Crem_Contig15 C 0 I 81
s caeSp111.Scaffold582    233946  6 +   484378 -----------tggtca-
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   500709  8 +   720316 ----------aaTTTAAG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3360280 100 -  4147112 I

a score=-12468.000000
s ce10.chrX              2674074 96 + 17718866 CTTCTAGAGTTTGTTGGTATAAGGTCTAATTTTAGTTCCAATATTCCAAATATTTATAA-GCAAGCCTCTAAATTGCGTTTCCT------------TGATCTTTA--------AGAT
s cb4.chrX              17411917 83 - 21540570 cctc-----ttttttacgaaa--------atttattccccgtttcttttatttttataccacaaa-----aaaattcattttcc------------caAATATAAATTGAGGG----
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold582    233952 71 +   484378 ----------CTTCTCAGAGATGCTCGGcattcatttcgatttccccgttttcttttgc------------aaactcattttcc------------caaaattaa------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   500717 87 +   720316 CTGTggaaattttacaaaacaaAGATCAAACTAAAAGTGAAT-----GAATCTTtacaa-----------aaagtttaattttcgATTTAATTtggtaaaaat--------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3360280 100 -  4147112 I
e caeRem4.Crem_Contig15   200350 81 -  1794024 I

a score=-1233.000000
s ce10.chrX              2674170 6 + 17718866 GTTCCT
s cb4.chrX              17412000 6 - 21540570 AATCCT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3360380 4 -  4147112 --tttt
i caePb3.Scfld02_0      I 100 I 11
s caeJap4.Scaffold18213   500804 1 +   720316 g-----
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    234023 0 +   484378 C
e caeRem4.Crem_Contig15   200350 81 -  1794024 I

a score=14086.000000
s ce10.chrX              2674176 196 + 17718866 TTAAAAAAATGCATCGTG----TTTTTAA----TTTGTTTACCT--CCGACAAAAAG--GCGTTCGCTTTTTATAGTG--TCTCATCTCCTATTTT---------------TTGTGCATTTCTGAAAGGAATCGCGCTTG----------------CCCATTCCCATCCATTC--TTTAGGCACT-----TCACAATTTCCATTAA-GGATTTT--------------TGCACTTT-CTGAAACACTA----CGATTTCACAGAAGAA
s cb4.chrX              17412006 141 - 21540570 ----------------------CCCAAAA----GTGGTTTACCC--CTATTGAATAGGCGCGTTCGCTTTTT-TAGTGTCTCTCATTTCCGTGTCAAGC--------------ctcaattttggaattgaa---------------tcctttttt-tgca-----------at--ttttggcttt---------------ccttaa-aattttt----------------ctcttt-cgaaaatct----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   200431 222 -  1794024 ttgagagaatttttccatttcctttgAAA----CTTGTTTACCT--CTTACGAAAA---GCGTTCGGTTTTTATAGTG--TCTTATTTCCCTGTTGACCATCACATCCCA-TTCtaaattttagaattgaaaCGCGATTGCTCCATTcctttttt-cgcattttcattccctt--ttttggtttt-----agaaGAATTCCATTAA-AGATTCTCACGT---------TGcacttt-ctgaaacatta---------------aaaaa
i caeRem4.Crem_Contig15 I 81 I 11
s caeSp111.Scaffold582    234023 201 +   484378 ttgaaagaattttttggc----gTCGAAA----CTTGTTTACT---CTCAAGAAAA---GCGTTCGGTTTTTATAGTG--TCTCATTTCCGTGTTGACCATCACATTTTATTCCG---------AATTGAATCGC----ATTTCTCCCGTTTTTTATacattctcatttcctt--ttaAGCCATTT----GAAGAGGTTCCATTTA-AGATTc---------------tgtacttt-ttgaaacatta---------------aaaaa
i caeSp111.Scaffold582  C 0 I 180
s caePb3.Scfld02_0       3360395 225 -  4147112 ttgaaagtattttttgcc----GCCTAAA----CTTGTTTACTG--CTAAGGAAAA---GCGTTCGGTTTTTATAGTG--TCTCATTTCCCTGTTGACCATCACATCCTA-TCCGCAATTTTGCAATTGAATCGCTCCTGcttcattccttttttagtcatttccattctctt--ttAAGGTTcttaagaaaaaagattccCGTTAGAGATTCTCACGT---------Tgcacttt-ctgaaacattg---------------aaaaa
i caePb3.Scfld02_0      I 11 I 10
s caeJap4.Scaffold18213   500805 207 +   720316 -aaaaactacTTGCTctt----ttttatatcgtctcatttcctttcctttctgacc---ccatcccaattttttagcg---cttttttcctcttc----------------ttcttcctttt------------------tcctttccatttttttctcattccCATTCGTTCAATCTAGGATTT---------------CATTAa-agattttcacattttgttCCATGCATTCCGCTGAAACATTAACATctgtttcacaaaaaaa
i caeJap4.Scaffold18213 C 0 C 0

a score=273.000000
s ce10.chrX              2674372 1 + 17718866 T
s caeRem4.Crem_Contig15   200664 1 -  1794024 t
i caeRem4.Crem_Contig15 I 11 C 0
s caeJap4.Scaffold18213   501012 1 +   720316 t
i caeJap4.Scaffold18213 C 0 I 18
e caePb3.Scfld02_0       3360620 10 -  4147112 I
e cb4.chrX              17412147 0 - 21540570 C
e caeSp111.Scaffold582    234224 180 +   484378 I

a score=600.000000
s ce10.chrX              2674373 30 + 17718866 TGAAATTAAAAA------------CATCATGTCT-----------AGCTGTCA
s cb4.chrX              17412147 23 - 21540570 -------aaaaaaaaa-------------tgtttg----------aacttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   200665 53 -  1794024 taaaaacaaaaaaaaacagctgtGCATTGTGCTTGTCTTAGACGAAACTTTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3360630 50 -  4147112 ---tggtgaaaaaaaacagctgtGTATTTTGTTTGTCTTTGACGAAACTCTTC
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18213   501013 18 +   720316 I
e caeSp111.Scaffold582    234224 180 +   484378 I

a score=-19207.000000
s ce10.chrX              2674403  92 + 17718866 T---------------AACGCATTCCAGTAATCTTTACCTGCCATTCGCACCAAATTCGAATATGTTTTTGGCA------------------------------------------ATTTTGTTATTAATTATGATGCTATGCTTTCCG
s cb4.chrX              17412170  60 - 21540570 g------------tttgatgcattgt--tgattcttttgtt-------------------------ttttcgagAAGG--------------------------------------TTTCTATTATTAGCC------------TCATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   200718 121 -  1794024 A---CGAAACTACTTTGATGCATTCt--tgattcttttcttttattct------actcaaaacttattttcaaaaacaaacacaTTTTGACCTAAAACAATCTGAAATACATCATTTATCTATTATTAGAC-----------------G
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3360680  93 -  4147112 TGACGAAAACTACTTTGATGCATTCT--TGATTCTTTTGTTCTATTTT------ACttgaacttgttttttgaaacacaa------------------------------------tcTTTGTTACGagtg------------tttcga
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold18213   501031  42 +   720316 ---------------TTATGCGCTCT--------GTTCATATGAAACT------ACCATGATCAGTTTTTG------------------------------------------------------------------------------
i caeJap4.Scaffold18213 I 18 C 0
e caeSp111.Scaffold582    234224 180 +   484378 I

a score=269563.000000
s ce10.chrX              2674495 567 + 17718866  
s cb4.chrX              17412230 566 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   200839 628 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    234404 587 +   484378  
i caeSp111.Scaffold582  I 180 C 0
s caePb3.Scfld02_0       3360809 603 -  4147112  
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18213   501073 541 +   720316  
i caeJap4.Scaffold18213 C 0 I 13

a score=-787.000000
s ce10.chrX              2675062 30 + 17718866 TTCTTAC-----------------TCCACATCTTGAAACCCC----CCGGC
s cb4.chrX              17412796 11 - 21540570 ttttttc-------------------------------actC---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   201467 34 -  1794024 ttctttc-----------------ttcacaTCTTGAAAACCCAAACCAAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    234991 44 +   484378 tcttctattttctcataGGCTTTATTCACATCTTGAAACCCC-------AC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3361412 35 -  4147112 ttctttac----------------TTCAAATCTTGAAACCTCCCCCCAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   501614 13 +   720316 I

a score=102748.000000
s ce10.chrX              2675092 482 + 17718866  
s cb4.chrX              17412807 399 - 21540570  
i cb4.chrX              C 0 I 228
s caeRem4.Crem_Contig15   201501 462 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    235035 444 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3361447 404 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   501627 395 +   720316  
i caeJap4.Scaffold18213 I 13 C 0

a score=-19629.000000
s ce10.chrX              2675574 141 + 17718866 GGCACTGCTTATGACTATTTGACTAT------------------TATAATGAATTAATG--------------------------------AATCAGGAAATTTA-----AAAAAAATTGAG--AAAAAACTGCTAAG------------------------------------------AATTCT--ACTAAAAACTAAACCGTAATAAGAAA-------------AGGGAGCTTCTTTTTCATGTTTTCCCTT
s caeRem4.Crem_Contig15   201963 200 -  1794024 -----GGCCTATGA----TGGGTcgtaagaa-----aaagagagtatAATAAATGGCTG-------------C-ATTTATCTTGCTAGTATGGTCCGGAAATTAA-----GAGACGCCAGAA--AAAAGATCAATTTA----GGTTCTACATAGGACTGAATGTGCCAGCGAAAGAGTAAGAGCAAATAAAAAGGGCCTAGCCAAAGACAGAAA-TCAGTAGAAAGAGGAAAAGCTGTAT---------------
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    235479 175 +   484378 -----GGCTGTTGA----TGG----------------------GTATAATAAATGGTCG-------------C-ATTTATCTTGCTTGTATGGTCCGGAAATTGC-----AAGAAACCTAGG--AAATATTCCATCAACTCGGGAGTTAATAGGGGGAGAATGTATGAACA-------AGAAGCCA--GAAAAAGACTGAGTCAGTGTGAAGAA-ACAGCG------Ggggatcttcttcttc------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3361851 191 -  4147112 -----GGCTTCTGA----TGGATTAT------------GGGGTATAGAATAAATAGTTGTTATAAATGCCTCC-ATTTATCTTTCTTGTATGGTCCGGAAATTGC-----AAAAAGCTATGGGAAAAAACCCTATCCA-------------------AGAATGTATAAAC----------AAGCCA--AAGAGGAACCGAGT-AGATTGTAGGA-TCATCGAGAAAAGGGgagcttcttctcc----tttttctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   502022 173 +   720316 -----GGTTGCTGA----TGAGGTACGGGTATATGCATAGGGACCATAACAGATGCTCG-------------CAATTCATCCAGC--------TCCGGAAATTGCGCACAGAAAAACCGGAT--AGGCACCCTATCAA-----------------TTTAAAagtataag-----------aaaaaa--aaaacgaatgggGACCAATTCTGGTTTTCGGCC------AGTTAGTTTAGTTT--------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17413206 228 - 21540570 I

a score=24138.000000
s ce10.chrX              2675715  70 + 17718866 ACTTC-----------------------------------CTTGACAGCACATAAATCTAGATCCA-G----------GCGAAAACGGACAATTAGAAG-TGTAG--TTGATTGACAGA
s cb4.chrX              17413434  71 - 21540570 aatc------------------------------------actGACAGCCTATAAATCTTCCTTGATA----------GTGCGAACGG-CAATTAGGAGAGGTGCGTTTGATTGACAG-
i cb4.chrX              I 228 C 0
s caeRem4.Crem_Contig15   202170  64 -  1794024 AG-----------------------------------------GACAGCGCATAAATCTTGATCCA-A----------GTGAAAACGG-CAATTAGGAGTGCTAC--TTGATTGACAGA
i caeRem4.Crem_Contig15 I 7 I 23
s caeSp111.Scaffold582    235654  64 +   484378 ----------------------------------------cttgaCAGCACATAAATCTAGATCCA-A----------GCGTAAACAG-CAATTAAAAG-CCTAG--TTGATTGACAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362042  67 -  4147112 --ttt-----------------------------------cctgacAGCACATAAATCTAGATCCT-A----------GCGAAAACGG-CAATTAGGAG-GCTAT--TTGATTGACAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   502195 113 +   720316 -GTTCCGCATCAAGGCTGGGGAATAGTGGGTAGAGAAAAGCGCCACTTCGCATAAATCTTGCGCTC-GTTCTGATTCTTTCAAAACGG-CAATTAGTAG-TGGGC--TTGATTGACAGA
i caeJap4.Scaffold18213 C 0 C 0

a score=-2237.000000
s ce10.chrX              2675785 20 + 17718866 CACCACACACACACA---CACAC----------
s cb4.chrX              17413505  8 - 21540570 ------------ATA---Cagac----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    235718  7 +   484378 -------------TA---CACAC----------
i caeSp111.Scaffold582  C 0 I 12
s caePb3.Scfld02_0       3362109  7 -  4147112 -------------TA---CACAC----------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18213   502308 20 +   720316 -------------TACGCCACACCTAGAACTAT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   202234 23 -  1794024 I

a score=17168.000000
s ce10.chrX              2675805 34 + 17718866 -CTT----CAATAGCCCGATTGCTTCCGTTTGAAAGAGT
s cb4.chrX              17413513 30 - 21540570 -cttgaaaaaaaaatccaattgcTTCCGTTT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   202257 34 -  1794024 -CTT----CAATTGTTCGATTACTtccgtttcgaaaatt
i caeRem4.Crem_Contig15 I 23 C 0
s caeSp111.Scaffold582    235737 34 +   484378 -CTT----TAATTGTCCGATTGTTTCCGTTTCGAAGAGT
i caeSp111.Scaffold582  I 12 C 0
s caePb3.Scfld02_0       3362132 34 -  4147112 -CTC----CAATTGCCCGATTGTTTCcgtttcaaagagt
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18213   502328 35 +   720316 TGTT----CGACCAGTTAATTTCTTCCGCTTCACAAAAC
i caeJap4.Scaffold18213 C 0 I 69

a score=-8083.000000
s ce10.chrX              2675839 52 + 17718866 TTT-------AAAACCGATTCAGTTTAGTCCGATGGGTCACAAATCTGAAAATCTGATG
s cb4.chrX              17413543 18 - 21540570 -------------TAGTAGACG--------AAAT------------------CTTAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   202291 42 -  1794024 ttc-atcgaaaaatagGGAACG--------AGATGGGTCAT--------AAGTTTAATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    235771 49 +   484378 TTCGTTGGaaaaaaaCGGCACCA--TGAGTAGATGGGTCAC--------AAGCCTTATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362166 40 -  4147112 t---tttcgaaaaaacggcGTA--------AGATGGGTCAC--------AAGCCTTATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   502363 69 +   720316 I

a score=42834.000000
s ce10.chrX              2675891 197 + 17718866 CTTATCGACAGGTCTACA----------------TGTTTCCCTTCCGGTGTTTGTTTTTGTTTTCCGTCGTTTCTGCCA---TTACTTTG-TTCTCCA---AGCA--------------ACCGAAC---------TTTTTGAATGAATGTTTCGTGAATCGTCTGTGACGCGCGGCGCGACGTTTAGTACTGCGCT-CACATAAAACATATTCTAAGCT----------AGGTCGTTTTGGAAAGTTTTTTTTT---
s cb4.chrX              17413561 140 - 21540570 ---GGAAAC--------------CTCTGAG----TTTTCCCTTTA----------------------------------------GTTCT-CTTTCCACCTGGTA--ACCAAAAGCGAAACCGA---------CGTTTCTGAGTGAACGTTTCGTTAATC-TTTGTGACG----------CTTT----------CC-GCCATAAAACATACCCTAAGCC----------G------TTTGGGTGGGTTTTC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   202333 188 -  1794024 TTTGTAGACAGGTGTATGTTCAGTTCAGCg----tgtttttttta-----ttcgttCA----------------GACTA--CTTTGTTCA-TTCTCCA---AGCA--ACCACAGCCAGCATTGAAC--CCGGTCGTTTTTGAGTGAATGTTTTGCGAATC-CTTGTGACG----------CGTTTAGTAGTGCGCT-AACATAAAACATATTCTAAGCc----------g------tttggaaagtttttt------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    235820 202 +   484378 CTTCTCGACAGGTGTACGTTCGCTCCTTTTCCTGTTCTCTACttt-----catgtttttgttttcc--------gcCTAACTTTTGTTCC-TTCTCCA---GGCA--ACCAATACTG--ACAGAACCTCCGGTCGTTTTTGAGTGAATGTTTCGCGAATC-TTAGTGATG----------CGTTTAGTAGTCCGCT-CACATAAAACATATTCTAAGCC----------G------TTTGGAAAGTTTTCT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362206 198 -  4147112 CTTGTCGACAGGTGTACGTTAGGTTCTCCT----TTTTCTGctat-----tttgttcttgttttcc--cGGTTTCCTCAACTTTCGTTCCACTCACCA---AGCA--ACCA--------ACAGAAC--CCGGTGGTTTCTGAGTGAATGTTTCGCAAATC-TTTGTGACG----------CGTTTAGTAGTGCGCTACACATAAAACATATTCTAAGCC----------G------TTTGGAAAGTTTTCT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   502432 193 +   720316 CTAGCCGACAGGTGTGCACTCTGtttcttc----tgtcttttttc-----ctttttct-----------------------tttcctccg-tttttAA---AGCAAAACCAAATT----ACTAAAT--TGCCTCGTTTTTGAGTGAATGCTTGGCGAATCTTTTGTGACG-----------TTTTAGTTAAGCGGT-Cgcataaaatat-ttttaagtctcaaaaaaaga------actggagaatttctt---ttt
i caeJap4.Scaffold18213 I 69 I 25

a score=5206.000000
s ce10.chrX              2676088 60 + 17718866 TACGGCGAATCATTACCGGGGTGGGGGGATTTGTGGAACGACGTACT-------------AGT-ACAGCTTTAG
s cb4.chrX              17413701 43 - 21540570 --------------------------GGATTTAGAGAACGAC---TTGTGGGCAGA-AAAAGT-CCACTTTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   202521 61 -  1794024 -acCAC----CATCA--------CCGGGGTTTAAAGAACGATGGACTATGGGATGACAAAAGCgccatttttag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    236022 61 +   484378 TACCGC----CATTA--------GAGGGATTTGTGGAACGATGGACTTTAGACCGGGAAACGt-cagtttttag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362404 59 -  4147112 TACCGC----CATTA--------GAAGGATTTGTGGAACGACGGAC--TACTTCCAAAAATGc-cagtttttag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   502625 25 +   720316 I

a score=22879.000000
s ce10.chrX              2676148 61 + 17718866 TTATATGGTCCCGGACTGCTGCTGGCTTTAGAATAAGAAATAAGACCCTCTTGAACGTTTC
s cb4.chrX              17413744 42 - 21540570 TTTTATGACCCTA-----CCAC-------------TGAAATAAGAcctttttgaacgttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   202582 37 -  1794024 ttttatgaCCCTA-----------------------GAAATAAGACC-TTTTGAACGTTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    236083 38 +   484378 ttttatgaCCCA-----------------------TGAAATAAGACCTTTTTGAACGTTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362463 38 -  4147112 ttttatgGCCCAT----------------------TGAAATAAGACC-TTCTGAACGTTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   502650 35 +   720316 TTTTATGATCC------------------------TGAAATAAGACC--CTCGAACGTTTC
i caeJap4.Scaffold18213 I 25 I 24

a score=3361.000000
s ce10.chrX              2676209 28 + 17718866 CTGGCTGGCCGGATGCCATGATGCCCGA
s caeRem4.Crem_Contig15   202619 19 -  1794024 ------AACC--ATTTCCTGATT-CCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    236121 19 +   484378 ------AACC--ATTTCCTGATG-CCGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3362501 19 -  4147112 ------AACT--ATTTCCTGACG-CCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   502685 24 +   720316 I
e cb4.chrX              17413786  0 - 21540570 C

a score=150332.000000
s ce10.chrX              2676237 243 + 17718866 AGATGTTTCGTGACGTT-AAAAGGGCTCATAACCAGTGCCACTACCACCACGCAAAGGTCAGAGGGATATCTTTTGAAACATGA-AACCAT--------TTCTAGAATATTGCTTTCCGTAACCGGA-----GAGGTTTCGAGATTTTTTTG----GAAATTT-TGCCTTTT-------TCTCTTCCA---------------------GAGCAAACTTCAAAAGTACGTAGGAGG-ATCGA--------CAGAAAGAG-----------------GGGAGCAAGATAATCAAAGGTTGCATTATTTATGCAAATTT---------------
s cb4.chrX              17413786 210 - 21540570 -----tttcgTGACGTTGAAAACGTCTCATA------------ACCACAACGCAAA--------AGATATC--TTGAAACATGAGAACCATGCGCGCACTCCTAGAATATTGCTTTCCGTAACCGGAGAGGGGAggtttcgaga-ttttttttttcgaaattt-catcctAC-------------------------------------GGGCAAACTTCAAAAGTACGTAGGAGT-ATGCG----------------------------------------AAGGGAATCAAATGTTGCATTCATTATGCAAATTC---------------
i cb4.chrX              C 0 I 75
s caeRem4.Crem_Contig15   202638 227 -  1794024 AGATGTTTCGTGACGTTGAAAACGTCTCATA------------ACCACCACGCAAAGGTC---TGGATATC--TTGAAACATGA-AACCAT--------TTCTAGAATATTGCTTTCCGTAACCGGA-----GAggtttcgaga-ttttttg----gaaattt-cgtcttttt------tcttttcta---------------------gagCAAACTTCAAGAATACGTAGGaggaatgag---------agaaaaaa-----------------gggagcAAGATAATCAAAGGTTGCATTATTTATGCAAATta---------------
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    236140 232 +   484378 AGATGTTTCGTGACGTTGAAAACGTCTCATA------------ACCACCGCACAAAGGTC---TGGATATC-TTTGAAACATGA-AACCAT--------TCCTAGAATATTGCTTTCCGTAACCGGA-----GAggtttcgagatttttttg----gaaatttccgtcctttcttc-cacttcttcca---------------------GGGCAAACTTCAAATATACGTAGGAGG-ATGGA-----------AAAGTG-----------------GGGGAAGCGACAATCAAACGTTGCATTATTTATGCaaatga---------------
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3362520 225 -  4147112 AGATGTTTCGTGACGTTGAAAACGTCTCATA------------ACCTCCACGCAAAGGTC---TAGATATC--TTGAAACATGA-AACCAT--------TCCTAGAATATTGCTTTCCGTAACCGGA-----GAGGattcgaga-ttttttg----gaaattt-cgccttttcttt---tttttttta---------------------gggcAAACTTCAAATGTACGTAGGAGG-ATGGA-----------GAAATA-----------------GGG--AGCGATAATCAAAGGTTACATTATTCATGCAaatat---------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   502709 287 +   720316 AGAAGTTTTGTGACGTTAAAATTGTCTCATA---------------GCCACGCAAAGGTC---TGGATATC--TTGAAACATGA-AACCAT--------TCCAAGAATATTGCTTTCCGTAACTGGA-----GACGttttgaga--ttttta----ggaattt-tgtcttttccactttccttttccgtttttcgattttcacaGGCCCAGGCAAACTTCAAA---ACGTAGGAGG-GCaaaaataaaagcaaaaaaaatgcgagaagcTGTGGGTGGGGATGAAGGAGTCAAAATTTGCATCGCTAATAAAAATCAATTACGTCTTTCCTT
i caeJap4.Scaffold18213 I 24 C 0

a score=-4892.000000
s ce10.chrX              2676480 23 + 17718866 TGGA--AATTATTCAGAATTC--------------------TTTT
s caeRem4.Crem_Contig15   202877 35 -  1794024 ----------ttgaACAACCCGCCAAAAATGggaatatatttatt
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    236375 18 +   484378 tg-------tttttgaaacgc--------------------TATT
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3362748 18 -  4147112 tg-------ttttcaaatctc--------------------tatt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   502996 23 +   720316 --GAAGAATTATTAATAGTTT--------------------TATT
i caeJap4.Scaffold18213 C 0 I 59
e cb4.chrX              17413996 75 - 21540570 I

a score=-1663.000000
s ce10.chrX              2676503 30 + 17718866 TTTAGATTTTAGAATTTTAATCGAACATTG
s caeRem4.Crem_Contig15   202912 17 -  1794024 tttag-------aatcataGTTGA------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    236393 21 +   484378 TTT---------AATGCcgactgaaaatag
i caeSp111.Scaffold582  C 0 I 67
s caePb3.Scfld02_0       3362766 24 -  4147112 tttacc------aattcaagcaaaaaatgc
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18213   503019 59 +   720316 I
e cb4.chrX              17413996 75 - 21540570 I

a score=-607.000000
s ce10.chrX              2676533 27 + 17718866 TGATCCGA---GGAAACTAAAACTAATAAA
s caeRem4.Crem_Contig15   202929 19 -  1794024 -----------TGAAACGAGCCATCTCAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3362801 30 -  4147112 gaattcgaGGATGAAAAGAGAACCAGTCAC
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18213   503019 59 +   720316 I
e cb4.chrX              17413996 75 - 21540570 I
e caeSp111.Scaffold582    236414 67 +   484378 I

a score=-1197.000000
s ce10.chrX              2676560 12 + 17718866 GATCTCACTGGG
s caeRem4.Crem_Contig15   202948 12 -  1794024 TTCTTATCTTAA
i caeRem4.Crem_Contig15 C 0 I 25
s caePb3.Scfld02_0       3362831 12 -  4147112 CCTTTATctcaa
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18213   503078 12 +   720316 GATCGGACTGCT
i caeJap4.Scaffold18213 I 59 C 0
e cb4.chrX              17413996 75 - 21540570 I
e caeSp111.Scaffold582    236414 67 +   484378 I

a score=101416.000000
s ce10.chrX              2676572 245 + 17718866 GGTCTTT----------TGGGAGCGCA----------GCGTTTCGCGTCATTAACTGATCATGCAC-----TGC-------GGCGGAAGAATG--CACAAATG--TTGGCAATAAATAATCATTAATGTTCC-TGCGTTCGACGATCAGATAACAC-GGCAAAAACGAGTTGAGCCAGAAGCT-------CTCTTCTTGTTCCGAAAAGAAG--TTCTCGCAGCTGTGTTTTTTTTT---GCTTTGTTTCAACATATGTT-TA-GAAGGAGAGTAGA-----TGAAGAACATG-GGAGAATGA
s cb4.chrX              17414071 254 - 21540570 GATCTTT----------TGGGATTTAAAAAGGTAGAGCTTTTTCGCGTCATTAACTGATCAtgttg-----tgtgtatgtgtgtagAAGAATGCACACAAATGCTCGGGCAATAAATAATCATTAATGTTCT-----TTTGACGATCAGATAACAC----AAGAACGGGTTTTGTGGGAGAGCTTCTggggtttttttgg---aaaacgaagATTTTTCacagctgtttttttttctttgtctttGTTTCAACATATGTT-TT-------GAGGGGT--------------TGAGGAACATGG
i cb4.chrX              I 75 C 0
s caeRem4.Crem_Contig15   202985 240 -  1794024 AGTGTAC----------TGGGGGTCCAGAGAAAAG----CTTTCGCGTCATTAACTGATCATGCAG-----TGT-------TGTGGAAGAATG--CACAAATG-TTGGGCAATAAATAATCATTAATGTTCCCCGAGTTTGACGATCAGATAACACGAGGAAGAACGGGttagagagaagaaa----agagctTTCTTGTTCCGAAACTAAG--TTTTCGCAgctgttttt---------tctttgtttctacATATGTT-TGTG---TAGAAGGGA--------------TG-GGAGAATGA
i caeRem4.Crem_Contig15 I 25 C 0
s caeSp111.Scaffold582    236481 266 +   484378 GATCTTTTTTGAGTGTATGGAGGTCCACAGAAAAG--CCTCTTCGCGTCATTAACTGATCATGTAG-----TGC-------TGAGGAAGAATG--CACAAATG--TTGGCAATAAATAATCATTAATGTTCC-CGAGTTCGACGATCAGATAACACGAGGAAGAACGAGTTCGAGCAGAAAGC--------TTTCTCGGTTCCGAAATGAAG--TTCTCGCAGCTGTTTTTGCT------GCTCTGTTTCAACATATGTT-TGGGAGAGAAGGGGGAtgtgaagaagaatatg-GGAGAATGA
i caeSp111.Scaffold582  I 67 C 0
s caePb3.Scfld02_0       3362856 235 -  4147112 gatcttttttgAGTGTATGGGGGTTCACAGAAAAG--CTTTTTCGCATCATTAACTGATCATGTAC-----TGC-------TGCGGAAGAATA--CACAAACG--CTGGCAATAAATAATCATTAATGTTCC-CGAGTTCGACGATCAGATAACACGAGGAAGAGTTGGGCCCAGC--------------------TCGTTCTAAAA--------TTTCgcagctgttttt-------------ttttccaacatatGTTGTGTGAGATAGCTGGGA-------AGATCCATG-AGAAAATGA
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18213   503090 216 +   720316 --------------------AGGCTCATCGG--------TTTTTGCATCATTAACTGATCATGTAGGCCGCTGT-------TCAAGAAGAATG--CACAAATG--CCAGCAATAAATAATCATTAATGTTCC--TAGCTTGACGATCAGATAACAA----------------------AAGCC-------TTTTAGTAGTTCTGAAAAGATG---CTTCACAGCTGTTTTC---------ACATTGTTTCGACATGTGCTTTAAGGAGGAACTGGGA----AAATGGCAAACA-AGAAAATGA
i caeJap4.Scaffold18213 C 0 I 153

a score=45.000000
s ce10.chrX              2676817 46 + 17718866 GAAA---------------------------TCTTTCTGACCAGCTGAAGCACATGGTCCCAACAA-TTTTTAG------
s cb4.chrX              17414325 68 - 21540570 GAGA---CTGGAGTGAAG--ggaaaatcccgattttttgACC------AACATCTGGTTTTGGGAT-ATTCTATTTATAA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig15   203225 73 -  1794024 GGGATTTCTTGAGATGAGTCGGTATAT----GTATTTTGACCAAATGAAACAGATGGCCC--AAAG-GTTCTATTTTTAG
i caeRem4.Crem_Contig15 C 0 I 247
s caeSp111.Scaffold582    236747 60 +   484378 GGGA---TCTCAGACAATTTTGT--------CT-TTCTGACCTATTGGAACATATGGCTT--ACAGATTTCTAT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3363091 60 -  4147112 GGGA---TTGCAAATGAGTCGGT--------CTATTCTGACCAATTGGAACATATGGttc--acat-tttctat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   503306 153 +   720316 I

a score=-927.000000
s ce10.chrX              2676863 4 + 17718866 TGTT--
s cb4.chrX              17414412 4 - 21540570 AGTG--
i cb4.chrX              I 19 C 0
s caePb3.Scfld02_0       3363151 4 -  4147112 --tttt
i caePb3.Scfld02_0      C 0 I 375
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236807 0 +   484378 C
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=-5559.000000
s ce10.chrX              2676867 176 + 17718866 CTATAAGTGTGTGATATGAAAAATTGAATGGGCTC---TGTGAATGGAAATGTCAGGTTTTTAAGTGTCAAGTTTGTTTAGAGTATCGG------TTCTGGGTACTTTTAATGGCTCAGAACTTgct--caaacaaacaaattttgaaatgaaatttttagaaaagttttcaaaattttttcatgac---
s cb4.chrX              17414416 168 - 21540570 TTATTGGTGTctaa----aaaagtaagaaaaggTTGAGTGCGAAta-----------tctataaaaat----tttcttaaagaCACAAGAGAGCctctttctcaattttagcGATTTACATAGTTTTTCAATGCAACCcgagcaaaaataaaaaaggaatgtaaactgttgaaa---aattgagaacgtA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    236807 141 +   484378 TTATAAACGTCTAA----TGAAATTGGAA----TCTAGTCTGATTAGTCAT------CCTGtagtctt----ttttttctgggaa----------tCTTGGATAAATCAATTAATTCATGTAGTTCT------------------GAACTAAGATTTATTACAGgtttctcaaaattaattcaCCAC---
i caeSp111.Scaffold582  C 0 I 224
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=24.000000
s ce10.chrX              2677043 58 + 17718866 ggttcaaaa--------------------cttcgaaaacaa-taggctagt-----tccagctaaaatctgaatatttggactt
s cb4.chrX              17414584 81 - 21540570 GGCTCAAAAATAAGGTAGTTTGCTTGCGTctttaagaaaaattaaacgagttattgtcgaattgaaa---aaaaagtaggacct
i cb4.chrX              C 0 I 164
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=0.000000
s ce10.chrX              2677101 163 + 17718866 ttttccacgtcgcagcggactgaaattatgtgtctacaaattatcatcttttattgcatatgttggttggttatctcatattattttgttgctgaaggtacatttataggcaaagagtgaccaattttgccattttcggttacttatcggctttataagtacc
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e cb4.chrX              17414665 164 - 21540570 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=581.000000
s ce10.chrX              2677264 46 + 17718866 ttgataaacgaaat---------aacgggggatgagcga--ccaaaatgtgcaatac
s cb4.chrX              17414829 57 - 21540570 ttgaaaaaccAAACTCATTTGCGAatgtagctcgaacgaggcgaaagtctgaaatat
i cb4.chrX              I 164 I 76
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=0.000000
s ce10.chrX              2677310 94 + 17718866 aagatgactttaaaatgtcaatttcggatagctgcgacacagaaaaatgacttaaatttgacgatttttctaaaattagccaatattttgaaat
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e cb4.chrX              17414886 76 - 21540570 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=1350.000000
s ce10.chrX              2677404 65 + 17718866 tttgaaccgccat-aaaaatttaaacaaatttt---ttgacaaattttggggaaacatcatcacaaaat
s cb4.chrX              17414962 60 - 21540570 TCTGGACTACTgtcagagatatgaaaaagttttcagctgataaattgt---------tcatcataaaat
i cb4.chrX              I 76 I 69
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=0.000000
s ce10.chrX              2677469 126 + 17718866 tggtttattggagcacaatttgggtttaaactttcaaaatacccaaaaccgatactccttctttGAAGGTTTCATACACTCCAATTTTCGTAAAAAACTAACAAAAAACAATCCATTTGAATTTGC
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e cb4.chrX              17415022  69 - 21540570 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=751.000000
s ce10.chrX              2677595 137 + 17718866 TAAAAAATTTGAACTTTTTTTATTAATTTCAAGCATTTTAGAACGTTT---------GACACATGCC---AATTTTTGATCGtaaataaaaaatttcaaaaaattttaaaataGTTCACTACGATAACTTTGTCAAGTTTGTCAATTCA
s cb4.chrX              17415091 134 - 21540570 TGAGAGTGTGGaagtccttctatta----caggttttatggtatttttttagttatgGAAATCTACCCGGAACTCCTTGt----aacaaaaaattgcaaaaaatc----aaaagcgCA-TACATGTTTTTTGTCA--TTTGTCATTTTC
i cb4.chrX              I 69 I 64
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=0.000000
s ce10.chrX              2677732 67 + 17718866 TCAATCATCCAGTATCAGAATAAAATCCTAGTAAACTTTTTTTAAATGTATTTTGAAGGACAGATTT
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e cb4.chrX              17415225 64 - 21540570 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=-19.000000
s ce10.chrX              2677799 69 + 17718866 TCCAACTTTTCAATGTTGAAACTTTTGTCTCGTGCTTCCCAAACTATACTATTTCAAGCAGCATCTGGA
s cb4.chrX              17415289 43 - 21540570 CCgaacttttt----ttccagcctttttttttgaattcccaa----------------------cTGGG
i cb4.chrX              I 64 C 0
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeJap4.Scaffold18213   503306 153 +   720316 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=-319.000000
s ce10.chrX              2677868 10 + 17718866 AAACTAGTTT
s cb4.chrX              17415332  4 - 21540570 AAAC------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   503459 10 +   720316 AAGTTGGGTT
i caeJap4.Scaffold18213 I 153 C 0
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e caeSp111.Scaffold582    236948 224 +   484378 I
e caeRem4.Crem_Contig15   203298 247 -  1794024 I

a score=1415.000000
s ce10.chrX              2677878 13 + 17718866 CTTCTTCATACCC
s caeRem4.Crem_Contig15   203545 13 -  1794024 CTTTTTCATgttc
i caeRem4.Crem_Contig15 I 247 C 0
s caeJap4.Scaffold18213   503469 13 +   720316 AGTTTTCAAGCCC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e cb4.chrX              17415336  0 - 21540570 C
e caeSp111.Scaffold582    236948 224 +   484378 I

a score=-1143.000000
s ce10.chrX              2677891 3 + 17718866 TCC-
s caeRem4.Crem_Contig15   203558 3 -  1794024 tgt-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    237172 3 +   484378 tct-
i caeSp111.Scaffold582  I 224 C 0
s caeJap4.Scaffold18213   503482 4 +   720316 TCgt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3363155 375 -  4147112 I
e cb4.chrX              17415336 0 - 21540570 C

a score=470207.000000
s ce10.chrX              2677894 746 + 17718866  
s cb4.chrX              17415336 787 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   203561 781 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    237175 779 +   484378  
i caeSp111.Scaffold582  C 0 I 105
s caePb3.Scfld02_0       3363530 787 -  4147112  
i caePb3.Scfld02_0      I 375 I 282
s caeJap4.Scaffold18213   503486 776 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-2318.000000
s ce10.chrX              2678640  49 + 17718866 T---------GGTTGAGAAGCCGATAATT--------GCGTTCCT-----------------AAAAATCTCAGA---------------------------------GTCATGAGG
s cb4.chrX              17416123 116 - 21540570 GTTTTTGGTGGGGTAGGGAGAGGGCAAGTTATTCAGAGGGTTTTTTATATGTAGTGCAAAACAAAAATACCATATTTCTTCTCATAGAAGTTTCGATTTCAGTAAAAGACAtcaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   204342  58 -  1794024 ttttttCCGAGGTTGAGAAGCCGATAATT--------GCGTTCCT------------------GAAAAACCAGAT--------------------------------GGAGTCAGG
i caeRem4.Crem_Contig15 C 0 I 152
s caeJap4.Scaffold18213   504262  52 +   720316 --------tggccTGAGAAGCCGATAATT--------gcgttttt---------------ttgaaaagaaaagg---------------------------------aaaacgaGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeSp111.Scaffold582    237954 105 +   484378 I

a score=-1286.000000
s ce10.chrX              2678689 94 + 17718866 GTATGTAAGTTGACTTTT--CAAACACCAAGTGCACAATGA-AAAAAATTCAAAAAAAAAACGTTGAGCAAGAATTTGGtaaaaaaaatgttttaat
s cb4.chrX              17416239 76 - 21540570 aaatt---gtcaacttat--TAAGCATTgacgatattatgataaataattcatca-------gttg-gcaaaatttGGATA--------gcttttac
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   504314 84 +   720316 -------GGTTGGCTTTTCCCAGACATCACATGTTCTA----GAAAAGTTTAGAAAAgaa--attatgaaattttttaaaacgggAACTATTTTAGT
i caeJap4.Scaffold18213 C 0 I 107
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeSp111.Scaffold582    237954 105 +   484378 I
e caeRem4.Crem_Contig15   204400 152 -  1794024 I

a score=629.000000
s ce10.chrX              2678783 28 + 17718866 tgaattttagattaattattttttCAAA
s cb4.chrX              17416315 25 - 21540570 agtaatcgagattaTTTA---TTTCAAA
i cb4.chrX              C 0 I 147
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeJap4.Scaffold18213   504398 107 +   720316 I
e caeSp111.Scaffold582    237954 105 +   484378 I
e caeRem4.Crem_Contig15   204400 152 -  1794024 I

a score=0.000000
s ce10.chrX              2678811 142 + 17718866 CAAGTGTGGTTCAAGTACAAAATTGTGAATAACCAAAAAAATTCAGTTTTTTaaggaaaagtaacggttctgagtatattgaacgtatagcaataacccaatatgaaacttctcaaaattttttcaaattttttttatggcg
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeJap4.Scaffold18213   504398 107 +   720316 I
e cb4.chrX              17416340 147 - 21540570 I
e caeSp111.Scaffold582    237954 105 +   484378 I
e caeRem4.Crem_Contig15   204400 152 -  1794024 I

a score=-999.000000
s ce10.chrX              2678953 400 + 17718866 ttttggaactctgaaaaatatggcacaatctgagctgaaatctttaattttGGTGATTTTCAACGGTCGAAAACTTAATTTTGATAGTTTATCTCACGTTTT--TTTTTGGCCCAAATTTTGTCATTTTCGGTTTTCGGACCTTATAATGTGCCTTAATATGTATAAAatatg-----caataaaa----ggtgatggttcagaaaag-----gtcaatttccgaccgttgcggcacggaaaagtgattaaaatcagagattttagcttttagtagacctatattttttttcga--attttggaaccgcagtaaaaaattttcacaatttt--------ttttttga---aaagtttcgatacgaagt----ttgtttatttgagcacgttttgTGCACTTTTTTTTT---------------------AACACGGAAACAGTTTATTCGTCTA
s cb4.chrX              17416487 422 - 21540570 ttccaaaatttcggaaaaca----ataatttta-cgGAAAGATTGAAACTACAAAATGGTCTGTGGtcattaccgtatttcctttaatagaaccTACTTTATGCTCTTtaagctgaatt-------------atctcggttcctataa--------gagatatgaaaaattagtcgactgataaaattttggtgataatttgaaaaataattcgtcagttgacaaatttt------cgatatctctaatgaaaaccgagataattgagttcaaacgACGTAGGATGCTCTTCAATCATATCAAATACGGCATATAATACTTGTCTAATTACcgtatcaattttttaaaacaaaaattgaaatcgaaaTCAAATTGTTTTCATTACCTTATCATGTTTACTTACTTTTTGTACTATCtacaaatatttaaaaaacacaaatctctttttcttttc
i cb4.chrX              I 147 C 0
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeJap4.Scaffold18213   504398 107 +   720316 I
e caeSp111.Scaffold582    237954 105 +   484378 I
e caeRem4.Crem_Contig15   204400 152 -  1794024 I

a score=-3758.000000
s ce10.chrX              2679353 14 + 17718866 ----------------------------------------------------TAATAATTA-------TTTCC
s cb4.chrX              17416909 73 - 21540570 aaacttCCCTTATGACTCATCCCAAAGCACTCAAAACCATCTAAAGCAGCGCCATCTGTTGATTTCTCTTCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   204552 16 -  1794024 ----------------------------------------------------TATCAATTAGT-----TTTAG
i caeRem4.Crem_Contig15 I 152 C 0
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeJap4.Scaffold18213   504398 107 +   720316 I
e caeSp111.Scaffold582    237954 105 +   484378 I

a score=383.000000
s ce10.chrX              2679367 10 + 17718866 TGATAACACT--
s cb4.chrX              17416982 10 - 21540570 TGTTAACA-TG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   204568 11 -  1794024 TGTTAGCATTG-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    238059 11 +   484378 TGTTAACA-TGT
i caeSp111.Scaffold582  I 105 C 0
e caePb3.Scfld02_0       3364317 282 -  4147112 I
e caeJap4.Scaffold18213   504398 107 +   720316 I

a score=6352.000000
s ce10.chrX              2679377 13 + 17718866 TTTTATGTCT--TCA
s cb4.chrX              17416992 15 - 21540570 TTTTATGTGTAGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   204579 13 -  1794024 TTTTATGTAT--TCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    238070 13 +   484378 TTTtatgtgt--ttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3364599 13 -  4147112 TTTTATGTTG--TCT
i caePb3.Scfld02_0      I 282 C 0
e caeJap4.Scaffold18213   504398 107 +   720316 I

a score=119361.000000
s ce10.chrX              2679390 336 + 17718866  
s cb4.chrX              17417007 351 - 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig15   204592 396 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 22
s caeSp111.Scaffold582    238083 420 +   484378  
i caeSp111.Scaffold582  C 0 I 23
s caePb3.Scfld02_0       3364612 433 -  4147112  
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18213   504505 345 +   720316  
i caeJap4.Scaffold18213 I 107 C 0

a score=-1335.000000
s ce10.chrX              2679726 40 + 17718866 --------------ATAGTTTTTTTTGAAAAGGAAAAAAAAAACAC---ATGTACTT
s caeRem4.Crem_Contig15   205010 39 -  1794024 --------------GAGACATAGTCTGAGAAAGCTATAAGGAA-CC---AAGACTTT
i caeRem4.Crem_Contig15 I 22 I 1
s caeSp111.Scaffold582    238526 42 +   484378 --------------AAGGCATTTCCTGAGAAAGTCAGAAAAAG-ATTCGATGTACTT
i caeSp111.Scaffold582  I 23 C 0
s caePb3.Scfld02_0       3365068 39 -  4147112 --------------GAAGCACTTCCTGAGAAAGTCAAAGAAGA-GT---GTGTACTT
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18213   504850 47 +   720316 gtttccctttttttttgacctctgcgcaaaatatgaaaaaggG-CA---AT------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17417358 38 - 21540570 I

a score=33558.000000
s ce10.chrX              2679766  92 + 17718866 TATTTATTGTGG----GAATTGAA---TGAATGAAAGAGC-TTAAGAATAGACA----------ACACTTGTGC-A--------------------ACATTTCGAAAGTTCAAC----GTGATTAACTACGTCAC
s cb4.chrX              17417396  99 - 21540570 TCTTTATTGTGTAC--AGCTT----------TAGAATAGAGGCTAGAATAGACATGTGAAGCCTTCTATTgtgcaa--------------------aaattttgaaagttcaaa----gtAATTGACGACGTCAC
i cb4.chrX              I 38 I 93
s caeRem4.Crem_Contig15   205050  95 -  1794024 ----CATTGTACACTTGACTTGCACACCAAATTGAATAGC-TCGAGAATAGACA----------TCCATTGtgc-a--------------------acattttgaaagttcaaa----gtGATTGACTACGTCAC
i caeRem4.Crem_Contig15 I 1 I 3
s caeSp111.Scaffold582    238568  83 +   484378 ----------------GGTTTgcaatttgaattgaatagC-TCCAGAATAGACA----------ACAATTGTGC-A--------------------ACgttttgaaagttcaaa----gTGATTAACGACGTCAC
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3365107  83 -  4147112 ----------------TGCCTGCAATACGAATTGAATAAC-TCCAGAATAGACA----------TATATTGTGC-A--------------------Acaatttgaaagttcaaa----gtAATTGACTACGTCAT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   504897 115 +   720316 -------TAGGAAA--TGACTGAA-----AATAGATTTGC--CTAAAAGGGACT---GAAGGGCCCCATTGTGT-AAAGAAAGTTGTAGAAGAAAGAAGTTTTGAAAGTTCAAACCATGTAATTGGCGACGTCAC
i caeJap4.Scaffold18213 C 0 C 0

a score=-7618.000000
s ce10.chrX              2679858  94 + 17718866 ------AAAAATGTT-------TT-----------------------------CTTAATAATAAATGTA----TGAAA---------TGTGACTTCAATGACCACGAATAATT-TGTTATGACAAACAGGCGCATACTTGAATACCAGTT
s caeRem4.Crem_Contig15   205148  84 -  1794024 ------ACACATATT-------TT---------TTAGAGCTGA---------ATTGGAGGGAAAActct------------------tcaaacttcaa--------aataact-ttttctaaaCAAC--------ACTTGAAAACCAGTT
i caeRem4.Crem_Contig15 I 3 I 18
s caeSp111.Scaffold582    238654 104 +   484378 ------ACACATAAT-------TTCATACACACCTAGAGCTGTAAAC----TACTTGGCGAGAAATGAATTGTTGTGACTTTGTATATAAAACT---------------------TTCATAACGAAC--------ACTTGAAGACCAGTT
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3365193 100 -  4147112 ------ACACATTAT-------TT----------GGAAGCTAAAAAC-----Gtctgaagaaaaactaa----cGTGACTAAATaacgaaaacttcaa--------aaatac--atttattaCCAAC--------ACTTCAGGACcagtt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   505012 112 +   720316 AACTAGAAGTATGGTGATTGTGTT----------TAGAATCATAAAAGGTGTGTTCCATAAACAGCAAC--------------------AAACTTCAACTTACACAATAAATCGTTTAATAATAAAC--------ACTTGAAGACCAGTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17417495  93 - 21540570 I

a score=-6050.000000
s ce10.chrX              2679952 35 + 17718866 TATACATTTTACAGTCGGTTG--AATTCGAATCATAA
s caeSp111.Scaffold582    238758 15 +   484378 tcc--------------------cattcaaa--aaag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365293 15 -  4147112 ttt--------------------gacaacaa--aCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505124 20 +   720316 -----------CAGATGATCAGTCATCATAA------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17417495 93 - 21540570 I
e caeRem4.Crem_Contig15   205232 18 -  1794024 I

a score=199068.000000
s ce10.chrX              2679987 214 + 17718866 TGATCACAAAAAGTACATCGCACCTATGA-----------TTACAGATTCGGCAGACGGAGAAAAGTGAATGCAAAGCCCGGAAAACATTGGGGGTCATCATGTCAGTGTTCATTATTTGCTGGCTCCCATTCTTCATTCTTGCCATATTCAAGTCTTTCGGCATGTGGATCCCGGATTGGTTGGATCTGCTAGCACTGTGGTTAGGCTACTCAAATAGGTAAG-T
s cb4.chrX              17417588 225 - 21540570 tgatcataaaaaGTGCATCGCACTTgttataagttttttttttcagattcgtcAGAATGAGAAAAGCGAATGCAAGGCGAGAAAAACGCTAGGGGTCATCATGTCGGTCTTTATCATTTGCTGGCTCCCATTCTTCATTCTCGCCATTTTCAAATCGTTCGGCATGAAGATTCCAGGATGGTTGGATCTCACAGCTCTCTGGCTTGGCTATTCCAATAGGTTTG-T
i cb4.chrX              I 93 C 0
s caeRem4.Crem_Contig15   205250 214 -  1794024 TGATCAGAGAAAGTACATTGCACTCATTA-----------TTACAGATTCGTCAGACGGAGAAAAGCGAATGCAAAGCAAGAAAAACATTGGGGGTCATCATGTCTGTGTTTATAATCTGTTGGCTTCCGTTCTTCATTCTTgccattttcaaatcatttggCATGCAGATTCCTGATTGGTTGGATCTACTTGCATTATGGCTTGGGTATTCCAATAGGTGAG-T
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    238773 215 +   484378 tgatcaaagATAGTACATTGCACTCATAA-----------TTACAGATTCGtcagacagaaaaaagtgaatgcAAGGCAAGAAAAACATTGGGGGTCATCATGTCAGTGTTCATCATTTGTTGGCTCCCATTCTTCATATTGGCTATATTCAAGTCATTCGGTATGCAAATCCCCGATTGGCTCGACCTTCTGGCTCTGTGGCTTGGCTATTCCAATAGGTAAGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365308 214 -  4147112 TGATCAGAAAAAGTACATTGCACTCATTA-----------TTACAGATTCGTCAGACGGAGAAAAACGAATGCAAGGCGAGAAAAACGTTGGGGGTCATCATGTCAGTTTTCATAATATGCTGGCTCCCATTCTTCATtcttgcaattttcaaatcattcggAATGGAAATTCCTGAATGGTTGGATTTGTTGGCTCTTTGGCTCGGTTATTCCAATAGGTGAG-T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505144 214 +   720316 TGACAATGTCTGGTCTAATGCTTTCGTAA-----------TTGCAGATCCGACAAACGGAAAAAAGCGAATGCAAAGCAAGGAAAACTTTGGGGGTCATCATGTCAGTGTTCATAATTTGCTGGCTCCCGTTTTTCATTCTTGCCATCTTTAAGTCATTCGGCATGCAAATTCCTGGATGGCTCGATCTGACAACTCTTTGGTTAGGGTATTCCAATAGGTAAG-T
i caeJap4.Scaffold18213 C 0 I 23

a score=1277.000000
s ce10.chrX              2680201 3 + 17718866 CCT
s cb4.chrX              17417813 3 - 21540570 TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205464 3 -  1794024 TCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    238988 3 +   484378 TCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365522 3 -  4147112 CCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   505358 23 +   720316 I

a score=-6210.000000
s ce10.chrX              2680204 32 + 17718866 T----TCATGGATTCC----------------ACCTGCCACACAATT--TCCAT
s cb4.chrX              17417816 20 - 21540570 A-------------------------------TTCTGTCACACCATT--T-CAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205467 53 -  1794024 ATAGAGTATATCGCCTGTAAATAACTTCTGTCTCCTGTCACATCTTTCCT-CTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    238991 46 +   484378 G---ATGATTGATGCTGAAAATAGCTACTA--TTCTGTCACATTCCT--T-CAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365525 46 -  4147112 C---ATGATTGATTGTGTAAAATCCTACTC--TTCTGCCACATTTCT--T-CAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505381 29 +   720316 ----CTCATTGATT------------------ACTTCCTCCAACTTT--T-CAT
i caeJap4.Scaffold18213 I 23 I 47

a score=792.000000
s ce10.chrX              2680236 5 + 17718866 CAACC
s cb4.chrX              17417836 5 - 21540570 CAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205520 5 -  1794024 CAATC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239037 1 +   484378 C----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365571 5 -  4147112 CAATC
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold18213   505410 47 +   720316 I

a score=-9574.000000
s ce10.chrX              2680241 38 + 17718866 ----------CGGAGAATTAAAAGTGGCCTACCAAAAATGGGGCATGC-----------------
s cb4.chrX              17417841 24 - 21540570 AAAG------AGGTCTATAAAAAT-----------------------------------ACGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205525 52 -  1794024 AGGAACTGCCAAGGTAATAAAAAGCG-------------AGAGTGACTGAAAATCGTAAATGAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239038 36 +   484378 ---------------AATCAGACCCGGGTTAC-------GGAGTACATTAAAATCTCA-------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3365576 42 -  4147112 I
e caeJap4.Scaffold18213   505410 47 +   720316 I

a score=22145.000000
s ce10.chrX              2680279 42 + 17718866 ATATGCCCATTCGCATTTCAATCATCGAGCCCATAAAGTTTG
s cb4.chrX              17417865 29 - 21540570 ATATGC-------CATTTCAATCAT------CATAAACTATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205577 42 -  1794024 ATATGCCCAACCACATTTCAATCATCGAGTCCATAAACTTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239074 42 +   484378 ATGTGTCTCACCACATTTCAATCATCCAGTCCATAAAGTTTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365618 42 -  4147112 ATGTGTCTCACCACATTTCAATCATCCAGTCCATAAAGTTTG
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold18213   505410 47 +   720316 I

a score=8534.000000
s ce10.chrX              2680321 50 + 17718866 ATGAAGATGCATCTG-CTTGACA--TATT----------CAGAAATTTGATCTTTCC---TGCCTA
s cb4.chrX              17417894 59 - 21540570 ATGAAGATGCATCCGTTTTGACA--TAT-----AGTGCGGCGAAATATTATCGGTGCGTGCCACGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   205619 59 -  1794024 ATGAAGATGCATCCG-TTTGGCA--TATTCTAGAGAGC-GCGAAATATGAGCGGCCC---TCCCGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239116 53 +   484378 ATGAAGATGCATCCG-TTTGgca--tattcaaaaaagc-gcGAAATATGATC---------GCCGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365660 59 -  4147112 ATGAAGATGCATCCG-TTTGCCATTTCTCTAAAAAAGC-GCGAAATTTGATCGGG-----TGGTGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505457 50 +   720316 ATAAAAA---------TGTGCCG--TGATGAAGTAAAT-AGGGAATTT-AGCTTTCT---TTCCGA
i caeJap4.Scaffold18213 I 47 I 211

a score=4819.000000
s ce10.chrX              2680371 93 + 17718866 GTGGCTCCA--TCAAAGTTTTGGTGACT-------ACCAGTGTGCTCACCAAAAAACTTTTTTTGGAC-------ATGATGGGACAATCTCGAATTACTTTATTAAAAA
s cb4.chrX              17417953 90 - 21540570 TTAGCCGCC--GACCAATTTTAGGCACCATTGgaaaaaaa------cgccaaaaaa---caTATGGCAGTCAA--------GGGAAATCTCAAATTACTCCATTTAAAA
i cb4.chrX              C 0 I 1012
s caeRem4.Crem_Contig15   205678 92 -  1794024 TTAGCTCCA--CACTATTTCTAACCGCC-------AATAA------cgccaaaaactt-tttatggtAGTCAAA-AAGATGAGACAATCTCAAATTTCGCTAATATGAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239169 89 +   484378 TTAGCCTGAAGCTTTGAATAGGGCCCCA-------AACAG------CGCTAAAAACTTCTATTTGGGC-------ATGGCGATGTGGGCTCAAATTACTTTAATATGAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3365719 89 -  4147112 TTAGCTTCA--CATAAAATGAGGCCACc-------gcca-----------aaaaactttcatttgagTACCAAAAACGATGGTGGAATCTCAAATTACGTTAATATGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   505507 211 +   720316 I

a score=-5833.000000
s ce10.chrX              2680464 217 + 17718866 GTACGCTAGAAAATTTTTTCAAAAAAAAGCTTAATGGGGACTTTGGAATCAGGGCTGAACGACTGGAGAGTCGGTTGGTA------GAGAAATTTTCAATTTTTCACAGATCA---TGTGATCAGAAAAAAATTAGAATTAAAAAAAACGACTAACGATATTTTAAACGTATAGGCCCAAAATG---------------Gggt----ggttcaaagtgtcgaat----------aaattgacttattttagctaa
s caeRem4.Crem_Contig15   205770 179 -  1794024 GTACATCAAGAagcattttccaaaaag-----------------agtAGAAGGGATTCCTGAAAATACAGGAAATTGGGATT---------------AACTTATCAGAGGTCAATGTATACACACACAAATG-------------GAGTGCTCTGTAATGTGACA-----------ccaaaatgggaaaaaaaggaaacgaaa--------aaaaatgtcatgA----------AGATT--TTAGTTTGGAGTGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239258 188 +   484378 GTACATCAAAAAGCAACT--AAATGAG-----------------GGAAACTGGAAGAATTGAAACTAGATGAGAAAGGGATTCTAGGAA--------AATTTATCAGAGGTCAACGTAC--ACACACAAATGT---------AAAAAAGG-ATAGTAATGTGACA-----------CCAGATTG---------------AAAGAAAGACtttaaaatgtttcattttgtcACGTAGATT--CTAGTTTCAGAGAA
i caeSp111.Scaffold582  C 0 I 38
s caePb3.Scfld02_0       3365808 140 -  4147112 GTACATCAAAAagcattt---------------------------gaaacaaaaaataacgaaatttTATTTGGAGAGTA------GGG--------AACTTATCAGAGGTCAACGTACATACATACAAAAGT---------GGAGAGGGAATAGTAATGTGAta-----------ccaaattg---------------aaaa--------taaactgcactaa-------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   505507 211 +   720316 I
e cb4.chrX              17418043 1012 - 21540570 I

a score=241.000000
s ce10.chrX              2680681 12 + 17718866 --------aatttcc------aattt
s caeRem4.Crem_Contig15   205949 18 -  1794024 --------AATTTCTACGTGCAGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3365948 24 -  4147112 aatgtttcgattttcaCGT--AGAtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   505507 211 +   720316 I
e cb4.chrX              17418043 1012 - 21540570 I
e caeSp111.Scaffold582    239446 38 +   484378 I

a score=-6365.000000
s ce10.chrX              2680693 34 + 17718866 tGAAAAAGTGGTCAAAACCAGAGACTTTA--GCTAA
s caeRem4.Crem_Contig15   205967 27 -  1794024 CTgaataaaattcgaaa--agggATTGTG-------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3365972  8 -  4147112 ct-----agtttc-----------------------
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18213   505718 36 +   720316 tgaaatagtaatagaaaaaaagaacttCAAAGATGA
i caeJap4.Scaffold18213 I 211 C 0
e cb4.chrX              17418043 1012 - 21540570 I
e caeSp111.Scaffold582    239446 38 +   484378 I

a score=-16132.000000
s ce10.chrX              2680727 70 + 17718866 AAATTGGCCAAAAAATTTTTTGCACATTTTGAGTTCATATGTTTTAACAATAACATTTTAAATGATAAGT
s caeRem4.Crem_Contig15   205994 35 -  1794024 -----------------------------------AAACTTTTCAGCAATTTACGTTTGAAATGGAAAGT
i caeRem4.Crem_Contig15 C 0 I 13
s caeSp111.Scaffold582    239484 17 +   484378 ------------AAat----------------gaacaaa-------------------------gaaaat
i caeSp111.Scaffold582  I 38 I 15
s caePb3.Scfld02_0       3365988 52 -  4147112 ------------aaattgtttg---attttgagaaaaaaatttcaggggtt---gtaggaaattgaaaac
i caePb3.Scfld02_0      I 8 I 12
s caeJap4.Scaffold18213   505754 31 +   720316 --------------------------AAGCTGATACAATTTTTCCGAacaatgcatt-------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17418043 1012 - 21540570 I

a score=163904.000000
s ce10.chrX              2680797 152 + 17718866 TTACAGCACATTAAATCCATTGATCTACTGCAAGTACAACAAAGAGTTTCGAATACCATTCCGTGAAATGCTTGCTTGTCGCTGTGCTACTTTACAGACTGTAATGCGACAACAAAGCTTCACCAGCCGCTACGGACCTCCTGTGTGAGTTT
s cb4.chrX              17419055 152 - 21540570 tttcagtaCCGTCAACCCACTAATCTATTGCAAATACAACAAAGAGTTCCGGATACCGTTCCGTGAAATGCTCGCATGCCGGTGCGCTACTCTGCAGACTGTCATGAGACAGCAAAGTTTCACCAGCCGATATGGTCCACCTGTGTAAGTTT
i cb4.chrX              I 1012 I 52
s caeRem4.Crem_Contig15   206042 152 -  1794024 TTTCAGCACATTGAACCCATTAATCTACTGCAAATACAACAAAGAGTTCCGGATACCGTTCCGTGAAATGCTTGCCTGCCGTTGTGCAACTCTTCAGACTGTCATGAGACAGCAAAGTTTCACAAGCCGCTATGGACCTCCTGTGTAAGTTT
i caeRem4.Crem_Contig15 I 13 C 0
s caeSp111.Scaffold582    239516 152 +   484378 tttcagcacTTTGAATCCTTTGATCTACTGCAAATACAACAAAGAGTTCCGGATACCGTTCCGTGAAATGCTCGCTTGTCGTTGTGCAACTCTTCAAACTGTCATGAGACAGCAAAGTTTCACAAGTCGTTATGGTCCTCCTGTGTAAGTTT
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3366052 152 -  4147112 tttcagcACATTGAACCCACTGATTTATTGCAAATACAACAAAGAGTTCCGGATACCATTCCGTGAAATGCTTGCGTGCCGTTGTGCAACTCTTCAGACTGTCATGAGACAGCAAAGTTTCACGAGCCGTTATGGTCCACCTGTGTAAGTTG
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18213   505785 152 +   720316 tttcagcacCCTGAATCCACTGATCTACTGTAAGTACAACAAAGAATTTCGAATACCGTTCCGTGAAATGCTCGCTTGTCGCTGTGCGACACTTCAAACCGTAATGAGGCAACAAAGTTTCACAAGCAGATATGGGCCTGCAGTGTAAGTTA
i caeJap4.Scaffold18213 C 0 C 0

a score=220.000000
s ce10.chrX              2680949 3 + 17718866 TTC
s caeRem4.Crem_Contig15   206194 3 -  1794024 CTC
i caeRem4.Crem_Contig15 C 0 I 116
s caeSp111.Scaffold582    239668 3 +   484378 CCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366204 3 -  4147112 CTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505937 3 +   720316 TTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17419207 52 - 21540570 I

a score=180.000000
s ce10.chrX              2680952 1 + 17718866 T
s caeSp111.Scaffold582    239671 1 +   484378 C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366207 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505940 1 +   720316 T
i caeJap4.Scaffold18213 C 0 I 4
e cb4.chrX              17419207 52 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=300.000000
s ce10.chrX              2680953 1 + 17718866 G
s caeSp111.Scaffold582    239672 1 +   484378 G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366208 1 -  4147112 G
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold18213   505941 4 +   720316 I
e cb4.chrX              17419207 52 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=271.000000
s ce10.chrX              2680954 15 + 17718866 CGCGGTTTGGATAAA
s caeSp111.Scaffold582    239673 15 +   484378 CGTAGAATAGACTAA
i caeSp111.Scaffold582  C 0 I 16
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e caeJap4.Scaffold18213   505941  4 +   720316 I
e cb4.chrX              17419207 52 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=0.000000
s ce10.chrX              2680969 625 + 17718866  
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e caeJap4.Scaffold18213   505941   4 +   720316 I
e cb4.chrX              17419207  52 - 21540570 I
e caeSp111.Scaffold582    239688  16 +   484378 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=282.000000
s ce10.chrX              2681594 3 + 17718866 GTT
s caeSp111.Scaffold582    239704 3 +   484378 GTT
i caeSp111.Scaffold582  I 16 C 0
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e caeJap4.Scaffold18213   505941 4 +   720316 I
e cb4.chrX              17419207 52 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=822.000000
s ce10.chrX              2681597 11 + 17718866 AATAAGGAATG
s caeSp111.Scaffold582    239707 11 +   484378 GAAAGGGAACA
i caeSp111.Scaffold582  C 0 I 1
s caeJap4.Scaffold18213   505945 11 +   720316 AACACTGAATG
i caeJap4.Scaffold18213 I 4 C 0
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e cb4.chrX              17419207 52 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=2728.000000
s ce10.chrX              2681608 25 + 17718866 TGGGTGG-GATGGTCTTTC--TTACAAG
s cb4.chrX              17419259 23 - 21540570 TGGGTGG-GTTGGTTCT----TCTCAAA
i cb4.chrX              I 52 I 26
s caeSp111.Scaffold582    239719 28 +   484378 GGGGTGATACGGGTTCTATAATTACAAG
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold18213   505956 25 +   720316 TGGGTGG-GATGGTTTTCT--TGACACA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=53.000000
s ce10.chrX              2681633 6 + 17718866 --CTGTTT
s caeSp111.Scaffold582    239747 6 +   484378 --TAGGGT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   505981 8 +   720316 CTTAGTTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3366209 100 -  4147112 I
e cb4.chrX              17419282 26 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=-2187.000000
s ce10.chrX              2681639 12 + 17718866 GGGTTGAAT-TTC
s caeSp111.Scaffold582    239753  9 +   484378 ----TGATTAGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366309 13 -  4147112 GGATTGAGTAGTT
i caePb3.Scfld02_0      I 100 C 0
s caeJap4.Scaffold18213   505989  6 +   720316 GGGTAG-------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17419282 26 - 21540570 I
e caeRem4.Crem_Contig15   206197 116 -  1794024 I

a score=5021.000000
s ce10.chrX              2681651 18 + 17718866 CATCAGAATTATGTTTGA-
s caeRem4.Crem_Contig15   206313 18 -  1794024 CATCAGAATCATGTTTTG-
i caeRem4.Crem_Contig15 I 116 C 0
s caeSp111.Scaffold582    239762 18 +   484378 CATTTGAACTATATTTCG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366322 18 -  4147112 CATTCAAATTATGTTTTA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   505995 17 +   720316 --TCCGAATAAGCTTCTGA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17419282 26 - 21540570 I

a score=257213.000000
s ce10.chrX              2681669 505 + 17718866  
s cb4.chrX              17419308 574 - 21540570  
i cb4.chrX              I 26 I 161
s caeRem4.Crem_Contig15   206331 516 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    239780 518 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3366340 508 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   506012 564 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=6300.000000
s ce10.chrX              2682174 34 + 17718866 AACT--------------------------ATTTTTTTCTCATCTGATTTATTCTCATTT---------
s caeRem4.Crem_Contig15   206847 43 -  1794024 aact-----------------tcttattttctcttcttctcatatACTTGATTGTCAGTT---------
i caeRem4.Crem_Contig15 C 0 I 36
s caeSp111.Scaffold582    240298 60 +   484378 aatttcttctctgtcttttcttcttcttttctcttcttctcatccaattgattttcaatt---------
i caeSp111.Scaffold582  C 0 I 38
s caePb3.Scfld02_0       3366848 33 -  4147112 aact---------------------------ttttcttctcatccaatTGATTGTCAGTT---------
i caePb3.Scfld02_0      C 0 I 10600
s caeJap4.Scaffold18213   506576 39 +   720316 ------------------------------ATCtcctttttgtcttttttcttctcggttcgctcattt
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17419882 161 - 21540570 I

a score=1212.000000
s ce10.chrX              2682208  9 + 17718866 -TCAATTTGT
s caeRem4.Crem_Contig15   206926  9 -  1794024 -TGGCTTTAT
i caeRem4.Crem_Contig15 I 36 I 64
s caeSp111.Scaffold582    240396  9 +   484378 -TTGCTTTAT
i caeSp111.Scaffold582  I 38 I 60
s caeJap4.Scaffold18213   506615 10 +   720316 tgaagtttgt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e cb4.chrX              17419882 161 - 21540570 I

a score=2000.000000
s ce10.chrX              2682217 2 + 17718866 CG
s cb4.chrX              17420043 2 - 21540570 CG
i cb4.chrX              I 161 C 0
s caeRem4.Crem_Contig15   206999 2 -  1794024 CG
i caeRem4.Crem_Contig15 I 64 C 0
s caeSp111.Scaffold582    240465 2 +   484378 CG
i caeSp111.Scaffold582  I 60 C 0
s caeJap4.Scaffold18213   506625 2 +   720316 cg
i caeJap4.Scaffold18213 C 0 I 5158
e caePb3.Scfld02_0       3366881 10600 -  4147112 I

a score=11138.000000
s ce10.chrX              2682219 34 + 17718866 GTACACAAGTAAGGTTACGTGACTTTCCTCTCCC
s cb4.chrX              17420045 34 - 21540570 GTACACTAGTAAGTTTACGTGACACTTTTTTCCC
i cb4.chrX              C 0 I 12923
s caeRem4.Crem_Contig15   207001 34 -  1794024 GTTCACAAGTAAGGTTACGtgatttttctctctc
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    240467 31 +   484378 GTACACAAGTAAGGTTACGTGATTCCTTTCC---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I

a score=2587.000000
s ce10.chrX              2682253 107 + 17718866 GTTGTAT--------AATGCTT-CTCATGCTTTCTAGCATTGCAATTATGTGCATTTCAGAAGGTGTGTGACACCTATTGCCTCAACTTTGTAT-AAAGTTTTATAACTTCTGAATA--
s caeRem4.Crem_Contig15   207037  89 -  1794024 gTTG-----------TCTGCTTACTTTTGCTTTGT----TAGCAATGATACTTAT-------TGTGTCAAACAC--ATTGACGTTATTCTgtat-aaaattgtat---ttctgaATA--
i caeRem4.Crem_Contig15 I 2 I 12216
s caeSp111.Scaffold582    240498 109 +   484378 GTTGTATTCTTTATATATGCTTAATCTTGCTTCGT----TAGCTATGCCACTGATTT--GTATGTGTCTAACAC-TAATGCTTTGATTGTgtataaaaattgatt---ttttggacata
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e cb4.chrX              17420079 12923 - 21540570 I

a score=273.000000
s ce10.chrX              2682360 3 + 17718866 AAT
s caeSp111.Scaffold582    240607 3 +   484378 aat
i caeSp111.Scaffold582  C 0 I 6868
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e cb4.chrX              17420079 12923 - 21540570 I
e caeRem4.Crem_Contig15   207126 12216 -  1794024 I

a score=0.000000
s ce10.chrX              2682363 426 + 17718866 GTATTGGACAGTATAACAACCTATAATTTTGGAAGTCCATCAAAACAGAAAATGTTGGTTACATATTGTTTTGAAAAGTATAGCAATTCGCCAAAACTTTGACTAGAAAAAAAATTGTTTCGGCAGTTTGAAATTACGACAAAAATGTAATTTTTTTTGTAAAATCGCAACTACATAGACGGATAAATTGTTCAAATTTGAAATTTTATTTTTTTTAAACCTCAAAAATTTTTTTGGATATCATTTAAAATATCTCATTAGTAAATTCGGTCTTTTGGATCAATTTGTTAACCACCCGATGTCTAAAAATTGTATAAAAACAAATGAATTTCCTTTTGACACCATAAGTGTGACTTTTAACAATTTCCCCAACTGCCGCAACTGCACTTCTAGAGATTCTTTATTTGTTTGTCTCAAACTTCTACA
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e cb4.chrX              17420079 12923 - 21540570 I
e caeSp111.Scaffold582    240610 6868 +   484378 I
e caeRem4.Crem_Contig15   207126 12216 -  1794024 I

a score=205.000000
s ce10.chrX              2682789 29 + 17718866 AATCATACTTATT-TCTGGTAAAAAATTGT
s caeRem4.Crem_Contig15   219342 22 -  1794024 AATAAAACTCATTATTTGGTAA--------
i caeRem4.Crem_Contig15 I 12216 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e cb4.chrX              17420079 12923 - 21540570 I
e caeSp111.Scaffold582    240610 6868 +   484378 I

a score=1697.000000
s ce10.chrX              2682818 73 + 17718866 AAAATTTTCACATTTATTCAATACATCGACGGTTCGA---------------AAAACTACACAAACTTG-----------GAAAAAATTGACGGCGAGA
s cb4.chrX              17433002 80 - 21540570 aaaaacttcaaatttacTCAAAC-----AAAGttcgcagagaaaaaa-----aaaactacacatttttaaatttttgggagaaaaaa-----ggc----
i cb4.chrX              I 12923 C 0
s caeRem4.Crem_Contig15   219364 66 -  1794024 -----TTTCACATTTActcgaaa----------tcgaaaaaaagaaattcgcaaaactacgcaattt-------------gaaaaag-----ggtagga
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e caeSp111.Scaffold582    240610 6868 +   484378 I

a score=-2191.000000
s ce10.chrX              2682891 6 + 17718866 GTTTGG-----
s caeRem4.Crem_Contig15   219430 1 -  1794024 --------c--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    247478 6 +   484378 -----gtataa
i caeSp111.Scaffold582  I 6868 C 0
e caePb3.Scfld02_0       3366881 10600 -  4147112 I
e caeJap4.Scaffold18213   506627 5158 +   720316 I
e cb4.chrX              17433082 0 - 21540570 C

a score=3543.000000
s ce10.chrX              2682897 12 + 17718866 AAAAAAAAACGG
s cb4.chrX              17433082 11 - 21540570 -aaaataaacgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   219431 12 -  1794024 aaaaataaaCGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    247484 11 +   484378 -aaaacaaaatg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3377481  6 -  4147112 ------AAAAAG
i caePb3.Scfld02_0      I 10600 C 0
e caeJap4.Scaffold18213   506627 5158 +   720316 I

a score=252041.000000
s ce10.chrX              2682909 413 + 17718866 G-------GAGAAAATGTG--CACACACCCATCTACTATA-AACTACCAACAAGAAATT---GGTTTCTA-AAAGACACACACACAATACTACTAG-CAGC-AAAACGTTTTTAAAAC-ATTTGGATCG--------TTTTAAATAGGGTGAGAAATAGAGAAAAATAAA-------ATGAGTGTAG---TGAAAACCAGTAGAACACAATTTTAAAAAAC-GGTGACGCAA-----------------GACAATCAATTGTTCTAATAAGTTGAGCGAATCGAGGAGACGGCGGCGTGAGCCACAAGAAGCTGGGCGAGAAGGCGAGACTCGAGGTAGGAGCGGGTGTCGACGATCCAGTCACGAGCAAGATGAGCTGGCTGACCCTTCAAAAGTTGAACAACGCGAATCGCCTTATCGAGATCACCATTGTGTACGTACTGCTTGGCGCGGGAAAGGATCTGAA
s cb4.chrX              17433093 407 - 21540570 a--aaacgggggaaacGTG--------------TGCTACA-AACTACCAACACAGAATTCGGGTTTTCTA-AAAGACGCAC------AAATACTAGCCAACAAAAGCTGTTTAAGGATTTTTTCAATCG--------TGAGTAGTAAGTTTT----------GTTACAAA-------ATGAGTGTAGGGGATAAAACCAGTAG---ATAGCGTGAAAAA----GTT-CGCAAggttttctttaaaaataggGAATT--TTGATCTAGTAAGTGGAGCGAATCGAAGAGACGGCGGCGTGAGCAACGAGGAGTTGAGCAAGAAGACGCGACTCGAGATAAGCACGAGTGTCGAGTACCCAGTCGTGCGCCAAATGGGCGGGTTGTCCCTTCAAAAGTTGCACAACACGAATCGCCTTGTCAAGATCTCCATTGTGAACGTACTGCTTAGCGCGGGAAAGGATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   219443 388 -  1794024 G--GAA----GAAAATGTGCACACACGTCCATCTACTACA-AACTACCAACACAGAATT---GGTTTCTA-GAAGACACA-------AAATACTAG-CAAC-AAAGCATTTTACG----TTTTGGATCG--------TTTTTAACAGAATAA----------TATAAGAA-------ATGAGTGTAG----TAAAACCAGTAG---ATAGCATaaaaaaaC-GGTT-CGCGA------------------GGAATT--TTGTTCTAGTAAGTGGAGCGGATCGACGAGACAGCGGCATGAGCGACGAGAAGTTGAGCTAGAAGACGTGACTCGAGATAAGCACGAGTGTCGACAATCCAATCACGAGCCAAATGAGCAGGTTGACCCTTCAATAGTTGTACAACACGGATAGCCTTGTCCAGATCTCCATTGTGGACGTATTGCTTGGCACGagaaagaatctgaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    247495 405 +   484378 gaaaaacagggaaaaTTTG--GGCAAACCCATCTACTACAAGACTACCAACACACAATT---GGTTTCTA-AAAGACACA-------AAATACTAG-CAAC-AAAGCTTTACAAA----TTTGGATTCG--------TTTCAAACAGAATaataa------tatcaaaaattttaatttgagtGTAG---ACAAAACCAGTAG---ATAATATAAAAAC---GGTT-CGCAG----------------CGGCAGAA--ATGTTCTAATAAGTGGAGCGGATCGACGAGACGGCGGCATGAGCCACGAGAAGTTGAGCAAGAAGACGGGACTCGAGGTAAGCACGAGTGTCGACAACCCAATCACGAGCCAAATGAGCTGGTTGACCCTTCAGAAGTTGAACGACACGGACAGCCTTGTCAAGATCTCCGTTGTGGACGAATTGCTTAGCACGGGAGAGAATCTGAA
i caeSp111.Scaffold582  C 0 I 8
s caePb3.Scfld02_0       3377487 390 -  4147112 G---AACAGGGAAAATGTG--CACACACCCATCTACTACATAACTACCAACAGACAATt---ggtttctagaaaaacaca-------aaatactAG-CAAC-AAAGCTTTACAGT----TTTTGGATCG--------TTTCAAACAGgttga----------atgaagaa-------atgagtGTAG---ATAAAACCAGTAG---ATAGCATAAAAAC---GGTT-CGCAG----------------CGGCAGAT--TGGTTCTAATAAGTGGATCGGATCGAAGAGACAGCAGCGTGGGCAACAAGAAGTTGAGCAAGAAGACGAGACTCAAGATAGGCACGAGTATCGACAACCCAATCACGAGCCAAATGAGCTGGTTGACCCTTCAGAAGTTGAACAAGACGGATAGCCTTATCTAAGTCTCCGTTGTGGACGTATTGCTTGGCACGGGAGAGGATCTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   511785 370 +   720316 -------GAAGAAAATGTA----TACACCCATCTACTACA---CTA---------GGTT-----TTTCTA-CAGG---CA-------AAATACTAG-CAAT-CAATCAATTC-------ACTtggatagttttttttttttaaacata--------------aaagGGTA-------ATAAGTGTGG-----AACACCAGTAG---ATAAAACAAATCGATGGGGT-CTGGC----------------CGGTATTT--CATTTCTAATAAGTTGAGCGAATTGACGACACTGCGGCGTGGGCGACGAGAAGTTGAGCAAGAAGGCGAGACTCGAGATAGGCACGAGTGTCAACTACCCAGTCATGGGCCAAATGAGCTGGCTGGCCCTTCAAAAGCTGAATCACTCGGATAGCTTTGTCAAGATCTCCGACTTGAACGTAGTGCTTTGCACGGGAGAGGATCTGAA
i caeJap4.Scaffold18213 I 5158 I 55

a score=-7040.000000
s ce10.chrX              2683322 50 + 17718866 CAAAA-----ATGTTTCACTAGTCTTACAAAACGTTTGAATTCTAATTTTAAAAA
s cb4.chrX              17433500 39 - 21540570 ----AACACTTAGATTATTAATTAAAAcaaga-----------tatttcgaaaa-
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig15   219831 44 -  1794024 ----a-----tcgaTTTCACATTCTAACAAAGC-tgttacaacttttttgggat-
i caeRem4.Crem_Contig15 C 0 I 2
s caePb3.Scfld02_0       3377877 34 -  4147112 -------------------TAATTTGACAAAGT-TGAGAACGTGAATTTATAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e caeSp111.Scaffold582    247900  8 +   484378 I

a score=288.000000
s ce10.chrX              2683372 15 + 17718866 AACTTGATATTTTTT---------
s caeRem4.Crem_Contig15   219877 15 -  1794024 aacctgattttttct---------
i caeRem4.Crem_Contig15 I 2 I 72
s caePb3.Scfld02_0       3377911 20 -  4147112 ----TAGTTTTCTCTATGTTCTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e cb4.chrX              17433539 42 - 21540570 I
e caeSp111.Scaffold582    247900  8 +   484378 I

a score=-312.000000
s ce10.chrX              2683387 24 + 17718866 GTACGGacatcgtacgggactggg
s caePb3.Scfld02_0       3377931 20 -  4147112 ATTCACCCATCGCGGTGAAC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e cb4.chrX              17433539 42 - 21540570 I
e caeSp111.Scaffold582    247900  8 +   484378 I
e caeRem4.Crem_Contig15   219892 72 -  1794024 I

a score=-5322.000000
s ce10.chrX              2683411 94 + 17718866 aagctctcggaataaagaaCAAGCATTTTAATAAAAATTATG---AGATAAGAATTTTGATTTTTTTGATCGGAATAAGAATGTTGCCATTCGAATC
s cb4.chrX              17433581 96 - 21540570 aagtttttgaacaaaaaaattcacaatttcacACTGTTCATATTCAGAAAACTGTCTTAACTTTGTGtttcagaggaaaaaaaataac-ttcaaatt
i cb4.chrX              I 42 I 156
s caePb3.Scfld02_0       3377951 24 -  4147112 -----------------------------------------ATGCAG------------ACCAAGCATTTCA-----------------TTCGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e caeSp111.Scaffold582    247900  8 +   484378 I
e caeRem4.Crem_Contig15   219892 72 -  1794024 I

a score=-2145.000000
s ce10.chrX              2683505 119 + 17718866 AAATTTATTTTTCACAACGGGGTCATATTTATAGAGACCCGAGTTATGAAGACAAAAGCCCGATTTTTACAAACCTGACAGTTTTTAAACGTGGGTTCATTACGTTACTTAAAGCTGAC
s caePb3.Scfld02_0       3377975  32 -  4147112 ---------------------------------------------------------------------------CGACAGTCGTT---------Ttctttataattttcagagct---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155  55 +   720316 I
e cb4.chrX              17433677 156 - 21540570 I
e caeSp111.Scaffold582    247900   8 +   484378 I
e caeRem4.Crem_Contig15   219892  72 -  1794024 I

a score=-15066.000000
s ce10.chrX              2683624 242 + 17718866 ATATTTTTAATGATATTTAACATGACTACTAATCAACCACGAAGTCATACGAG--------------CGTATCTCACAATCTGGAGTATTCTTATAAAAGTACGGAATTTCTGCCGGATTCTAAAAAAAAAACAGTGGAAAACGCCAAAAGTGATCTGCTAATCTGCTGCCAAAAATCCAACCTCAAAATTTCTAAGAGTCAGGAGCAACGTGGATGGaaa---tattttt----------aaattttttaaatGGAATCATGACCAGA
s cb4.chrX              17433833 239 - 21540570 ATATTTAT-CTGAGAGATGATGGGACCATCGGT-ACCCACGAGGTCCCACCAATTGATAAAGCGCTCCCAACACGACGATCGTGGTCCCAACAACCTTGGAACAGTCTTATTTCCTTTTT------AAGAAATGTTCAGAAACT-----AGCAAGCTCCTGATCTA-----GAGAATGGGACCTTCA----TTTAAAGATCAGG----ACGTGATAGGAAGGTCCATCCTTGAAGGATGGCAAGATTGAT----GAAACCATGGTCGGA
i cb4.chrX              I 156 I 82
s caePb3.Scfld02_0       3378007 115 -  4147112 ttctTTAT-GTGGAAACT-------------------------TTCACGTCAG--------------CTAACTGGATGAATg--------------------caaaattaatt--------------gaaaatatttataca------------------------------------gaagttcca----atcaaaaattc----------------aaaatttttcctt----------aATATTATT--------CAATG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155  55 +   720316 I
e caeSp111.Scaffold582    247900   8 +   484378 I
e caeRem4.Crem_Contig15   219892  72 -  1794024 I

a score=-280.000000
s ce10.chrX              2683866 77 + 17718866 TTTTTATGGAATATGTGAGCTA------TACAATTTTATGTATCAT-GTTCAATCACCTAGGGGTTGCAGAGCAGAGTTGTTTA
s caePb3.Scfld02_0       3378122 75 -  4147112 ------TGGAAAATTTAAGCAGCTCAAGTACACTGAAACGTActattgttccaatttttgagcatCG---AACAGTTTCATCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e cb4.chrX              17434072 82 - 21540570 I
e caeSp111.Scaffold582    247900  8 +   484378 I
e caeRem4.Crem_Contig15   219892 72 -  1794024 I

a score=-967.000000
s ce10.chrX              2683943 25 + 17718866 CGTATCCGCATAATTATGACCCACT
s cb4.chrX              17434154 25 - 21540570 CAGATCAACCTGATCACGCTCCTCT
i cb4.chrX              I 82 C 0
s caePb3.Scfld02_0       3378197 15 -  4147112 ------AGCCTTAGAATCATT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e caeSp111.Scaffold582    247900  8 +   484378 I
e caeRem4.Crem_Contig15   219892 72 -  1794024 I

a score=-2586.000000
s ce10.chrX              2683968 18 + 17718866 CTAATGTATTCTGTAC---TC
s cb4.chrX              17434179 19 - 21540570 CTAACTCTTTTCTTCGCCT--
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold582    247908 16 +   484378 CCAATTTGACCTATAG-----
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3378212 15 -  4147112 -TGTTGCGATCTCTAG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I
e caeRem4.Crem_Contig15   219892 72 -  1794024 I

a score=-2583.000000
s ce10.chrX              2683986 12 + 17718866 AAATCTATC-CTC
s cb4.chrX              17434204  8 - 21540570 ----AAATA-CTC
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig15   219964  9 -  1794024 ----AAATATCCT
i caeRem4.Crem_Contig15 I 72 C 0
s caeSp111.Scaffold582    247924 13 +   484378 AAAACTCTCTCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3378227 10 -  4147112 ---CCTATAGCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   512155 55 +   720316 I

a score=226751.000000
s ce10.chrX              2683998 295 + 17718866 ACCTCATAGTTATCAGTGTTGTTCACATCAATAGCATCTAAATTTCCATACTGTTGTGGCATATCCACGAGGAACAGGGATTTGACGTACGACCAGAAATAGGCTCCTAAGGTTCCTCCGTTCTCATCGATAGAAGCAGTCTTGCGACCAATCTTGTACAGTTGCTCGAAGCGGTTTTTGAGATCCTGCTCAGTGTATGTGCCAACTGTGGTCGCTTGTTTTGGGAACGAGTCGATGATGGCGTTGACAAACTCGTCTTCTGGATTGACC--TGAAAACGATAAATTCAGATTAAAA
s cb4.chrX              17434212 293 - 21540570 ACCTCATAGTTGTCAGCGTTATTGACATCAATTGCGTCCAATTCGCTGTACTGTCTTGGCATATCCACTAGGAAGATCGACTTCACATAAGACCAGAAGTAAGCACCGAGGCCTCCACCATTCTCATCAATGGTCGCAGTCTTGCGGCCAACCTTGTAAAGTTGCTCGAATCGATTCTTAAGATCTTGTTCCGTGTAAGTTCCGACAGTGGTCGCTTGTGTTGGGAAGGATCCAATGATGGCGGTGACGAATTCGTCCTCTGGGTTTACC--TGGAAACA--AGTTTCTGGTTAAAA
i cb4.chrX              C 0 I 559
s caeRem4.Crem_Contig15   219973 292 -  1794024 ACCTCATAATTGTCGGTATTGTTGACATCAATCAGTTCCTGCTCGGAGTACTGTTTCGGCAGATCGACAAGGAAAATTGACTTGACGTATGACCAGAAATAAGCTCCTAGTGTTCCACCATTCTCATCGATCGAAGCAGTTTTGCGTCCGACTTTGTAGAGTTGCTCGAATCGATTCTTGAGATCTTGCTCTGTGTAAGTTCCAACAGTCGTAGCTTGTTGTGGGAAGGAACCAATGATGGCGTTGACAAATGCATCCTCTGGGTTCACC--TAAAAGC---AGccaataatgaaaa
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    247937 273 +   484378 ACCTCGTAATTATCGGCGTTATTGATATCGATTTGTTCAGTTTGATTGTATTGTCCTGGCATATCAACAAGGAAGAGCGATTTCACGTATGACCAGAAGTATGCTCCCAAGGTTCCTCCATTCTCATCGATAGCAGCAGTCTTGCGACCAACCTTGTACAATTGCTCGAAACGATTCTTCAGATCTTGCTCAGTGTATGTTCCGACAGTAGTTGCCTGTTTTGGGAAAGAACCGATGATAACATTGACGAAAGCGTCCTCTGGGTTAACC--TGA----------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3378237 275 -  4147112 ACCTCATAGTTGTCGGTGTTATTGACATCAATTATGTCAGTGGCAGCATACTGTTTTGGCATGTCCACCAGGAAAAGAGATTTGACATACGACCAGAAATATGCCCCGAGAGTTCCACCGTTCTCATCAATTGCAGCAGTTCTGCGGCCGATTTTGTAGAGCTGTTCGAATCGGTTCTTTAGATCTTGCTCAGTGTATGTTCCAACTGTAGTTGCTTGCTTCGGGAATGAGCCGATGATCGCATTGACAAAGCTGTCCTCTGGGTTTACCtataa----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   512210 289 +   720316 acctcaTAATTGTCTGCATATGTCACATCAATCGAGTCGTTCTCCGTATACTGTCTTGGCAGATCGACCAGGAAGAGAGATTTGACATAAGACCAGAAATAAGAGCCTAGAGTTCCTCCGTTCTCATCAATCGCCGCCGTTTTGCGGCCAACTTTGTAGAGCTGATCGAAACGGTTCTTCAGATCTTGCTCAGTGTAAGTTCCGACGGTGGTCGCTTGTTTCGGGAATGAGCCGATGATGGCGTTGACAAACGCATCTTCGGGGTTtacc--tgaaaaat--aaatcttgtTT----
i caeJap4.Scaffold18213 I 55 C 0

a score=-14281.000000
s ce10.chrX              2684293 37 + 17718866 TGAAAATGTAGAATAGTAACAAAAT-------------GTAAAAAA----------------------GTTG
s caeRem4.Crem_Contig15   220275 67 -  1794024 TGAAGATCTTGACAGAGAATACTATTCCtagattttt-atgaaaatcccACAAACTAAACTACTGTCG----
i caeRem4.Crem_Contig15 I 10 I 91
s caeSp111.Scaffold582    248210 22 +   484378 -----------------AACAATAT------ATGTTT-ATGAACAA--------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3378512 23 -  4147112 -----------------atcaaaat------ttcctcgatgaattg--------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   512499  9 +   720316 -------------------------------------TATTAATTG--------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17434505 559 - 21540570 I

a score=351738.000000
s ce10.chrX              2684330 417 + 17718866  
s cb4.chrX              17435064 415 - 21540570  
i cb4.chrX              I 559 I 42
s caeRem4.Crem_Contig15   220433 513 -  1794024  
i caeRem4.Crem_Contig15 I 91 C 0
s caeSp111.Scaffold582    248232 458 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3378535 461 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   512508 425 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-24606.000000
s ce10.chrX              2684747  49 + 17718866 AAAGTGGAATATTTGAGG----------------------------------------AAAAACAACTTTTAACCCCAA-------------------ATTTGATAAC
s caeRem4.Crem_Contig15   220946  13 -  1794024 ----------------------------------------------------------------------------TAT-------------------GTCTGATGTG
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    248690  13 +   484378 ----------------------------------------------------------aaaaatag----------tatCA---------------------------
i caeSp111.Scaffold582  C 0 I 19
s caePb3.Scfld02_0       3378996 102 -  4147112 gaagttcaGTGCTTGTGTATTAATCTAGACTGCTTTTTGTTGTA-----CTATCACAAAGAGGTAGCTTTTAA-TTTATCAAAGGCTGAACACCGTCGATTTGACATA
i caePb3.Scfld02_0      C 0 I 72
s caeJap4.Scaffold18213   512933  40 +   720316 -------------------------taaatgttttttttttgtaaattctaACTGTAATTAAGTA-------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17435479  42 - 21540570 I

a score=233686.000000
s ce10.chrX              2684796 239 + 17718866 A-AACTTACAGCTCGTTCGATTTCCAACTCATTCTGACGGCCAACACGGCTCATCTCAATGCTCAATTTTTCAGACGCGATCCGCTCATCGGCAAGTCGCTGCTCTTCAAGAGCCTTTGAGATGTGCAGTTCCTCGCGAACTTGCTGATCCGAAAGCTGACAACGAAGCTGGTCAACTTTGAGATGAGCGTGAGCGATCAATGCATTCAGTTCGTCTTCGTTGAGATTTTTGTCCTGAAA
s cb4.chrX              17435521 239 - 21540570 T-AACTTACAGCTCTCTCAATTTCAAGCTCTTTTTGAAGTCCAACACGGCTCATCTCAATGCTCAGCTTCTCAGAAGCAATACGCTCGTCGGCAGCGCGTTGCTCTTCAAGAGCTTTCGAGATGTGCAACTCCTCGCGAACTTGTTGATCGGAAAGCTGACGACGAAGTTGGTCCACCTTCAAGTGAGCATGAGCAATGAGAGCGTTAAGCTCTTCTTCGTTGAGATTCTTGTCCTGAAA
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   220976 239 -  1794024 a-aactcaCAGCTCGCTCAATTTCAAGTTCTTTCTGGAGACCGACGCGGCTCATCTCAATTCCTAACTTCTCCGAAGCAATGCGCTCATCAGCAAGACGTTGTTCTTCGAGAGCCTTCGAAATATGCAACTCCTCACGAACTTGTTGATCGGACAGTTGACGACGAAGTTGATCTACTTTGAGGTGGGCGTGGGCGATCAAAGCATTGAGCTCTTCCTCGTTGAGATTCTTGTCCTGCAA
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    248722 239 +   484378 T-AGCTTACAGCTCTTTCAATGTCGAGCTCCTTCTGAAGACCAACGCGACTCATTTCAAtgctcaatttttcagaagcaaTACGCTCATCGGCAAGTCGTTGTTCCTCGAGAGCTTTTGAGATATGCAACTTTTCGCGAACTTGTTGATCCGAAAGTTGTCGACGAAGTTGATCGACTTTAAGATGAGCGTGGGCGATCAAAGCGTTGAGCTCATCTTCGTTAAGATTCTTGTCCTGAAA
i caeSp111.Scaffold582  I 19 C 0
s caePb3.Scfld02_0       3379170 240 -  4147112 TAAACTCACAGCTCTTTCAATATCGAGTTCTTTTTGAAGTCCAACACGGCTCATTTCAATGCTAAGCTTCTCAGAAGCAATACGTTCATCAGCCATTCGTTGTTCCTCAAGAGCCTTTGAAATATGCAATTCTTCACGAACTTGTTGATCGGAGAGTTGACGACGGAGTTGATCAACTTTAAGATGAGCGTGGGCAATCAGAGCGTTGAGCTCATCCTCGTTGAGGTTCTTgtcctggaa
i caePb3.Scfld02_0      I 72 C 0
s caeJap4.Scaffold18213   512973 235 +   720316 -----TTACCGCTCTCTCAATGTCAAGATCCTTTTGATGACCGAGGCGGTTCAATTCGATGCTCAGCTTTTCAGAGGCGATGCGCTCATCAGCAAGGTGCTGCTCATCGAGAGCCTTGGAAATATGAAGCTCCTCACGAACTTGTTGATCGGAAAGCTGACGACGGAGTTGGTCAACCTTCAGATGAGCATGAGCAATCAGAGCATTAAGCTCGTCCTCGTTCAAGTTCTTGTCCTGAAA
i caeJap4.Scaffold18213 C 0 I 3046

a score=-14497.000000
s ce10.chrX              2685035 47 + 17718866 ATGAATTT------------------ATGTGAACTTTCAAATTTG---TATTTTAGGAAACAATGTCA-------
s cb4.chrX              17435760 31 - 21540570 --------------------------TTCTTC----------------TAT--CAGTATAGAGTTTCTGGATGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   221215 39 -  1794024 --------------------------ATATTCATAATCA---------TAT-ATATTGtttagcttttagttaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    248961 39 +   484378 --------------------------TTGATGACATTCAATTACC---CATTCCACTATACGATTTCG-------
i caeSp111.Scaffold582  C 0 I 372
s caePb3.Scfld02_0       3379410 66 -  4147112 a--aattattaactGTTTTCTAGCTGTAAATcgcattctatttttttatttttcattgtacAATATCT-------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   513208 3046 +   720316 I

a score=-2866.000000
s ce10.chrX              2685082 30 + 17718866 AAAAGGCTTTTCGTT---TAGTCAAAAATTTTA-
s cb4.chrX              17435791 24 - 21540570 -----GTTTTTCTATTCCCTATGA-----Ttttg
i cb4.chrX              C 0 I 129
s caeRem4.Crem_Contig15   221254 19 -  1794024 ------tttttcaat---caaaca-----cttt-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3379477 30 -  4147112 AATCTGTTTTTTGAG---TAATGAGATAGCTTG-
i caePb3.Scfld02_0      I 1 I 419
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e caeSp111.Scaffold582    249000 372 +   484378 I

a score=0.000000
s ce10.chrX              2685112 3 + 17718866 AAC
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17435815 129 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I
e caeRem4.Crem_Contig15   221273 0 -  1794024 C

a score=501.000000
s ce10.chrX              2685115 21 + 17718866 GTTTGATATTCGACTTTCAAT
s caeRem4.Crem_Contig15   221273 20 -  1794024 -tttatttttccaattacagt
i caeRem4.Crem_Contig15 C 0 I 276
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17435815 129 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I

a score=0.000000
s ce10.chrX              2685136 114 + 17718866 TTGTGAAAAATAACAGAAGCCTTTCCTATCAAATCCTCAGCTGAAATATCTTCCTGAATCAGTCAGCATCTATAAAAAATTGTAAAAATTGTGATCTCAAATATATTTGTACTG
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17435815 129 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I
e caeRem4.Crem_Contig15   221293 276 -  1794024 I

a score=925.000000
s ce10.chrX              2685250 59 + 17718866 TAACTATTTGTACTAAAGGTATGTTGTATTCTTCTGACTTTACCGAGAGTACATATCAA
s cb4.chrX              17435944 57 - 21540570 tattttcttgaaataaaGAAAAG--GCTATTTTATGacttcaccaaaaaaaaagattga
i cb4.chrX              I 129 I 150
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e caeSp111.Scaffold582    249000 372 +   484378 I
e caeRem4.Crem_Contig15   221293 276 -  1794024 I

a score=0.000000
s ce10.chrX              2685309 56 + 17718866 CTATAAATATAATTTTTGCTTTTGACTACAAAAATTTCATAAATGCACCTTAGCAA
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17436001 150 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I
e caeRem4.Crem_Contig15   221293 276 -  1794024 I

a score=861.000000
s ce10.chrX              2685365 14 + 17718866 AATCATAGGCTCAT
s caeRem4.Crem_Contig15   221569 14 -  1794024 AGCCATTGGCTCAT
i caeRem4.Crem_Contig15 I 276 I 63
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17436001 150 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I

a score=0.000000
s ce10.chrX              2685379 43 + 17718866 TTGAGCCTATTACAGAAATTCATTATTTTATAAAAAACCGAGG
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17436001 150 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I
e caeRem4.Crem_Contig15   221583 63 -  1794024 I

a score=54.000000
s ce10.chrX              2685422 5 + 17718866 ATGGA
s caeRem4.Crem_Contig15   221646 5 -  1794024 cttga
i caeRem4.Crem_Contig15 I 63 C 0
e caePb3.Scfld02_0       3379507 419 -  4147112 I
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17436001 150 - 21540570 I
e caeSp111.Scaffold582    249000 372 +   484378 I

a score=613.000000
s ce10.chrX              2685427 2 + 17718866 CT
s caeRem4.Crem_Contig15   221651 2 -  1794024 ct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    249372 2 +   484378 tt
i caeSp111.Scaffold582  I 372 C 0
s caePb3.Scfld02_0       3379926 2 -  4147112 tt
i caePb3.Scfld02_0      I 419 C 0
e caeJap4.Scaffold18213   513208 3046 +   720316 I
e cb4.chrX              17436001 150 - 21540570 I

a score=-930.000000
s ce10.chrX              2685429  3 + 17718866 --------CCA
s cb4.chrX              17436151 11 - 21540570 ccactctttct
i cb4.chrX              I 150 C 0
s caeRem4.Crem_Contig15   221653  6 -  1794024 -----ttttct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    249374  3 +   484378 --------cct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3379928  3 -  4147112 --------cct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   513208 3046 +   720316 I

a score=224542.000000
s ce10.chrX              2685432 313 + 17718866 T---------TCCTTCTATTTTTTT-----CG-----TCACTCACTTTAGCGTGAATATCAACATTTGGCAAGATGCTCTTCATCTCAAGAGCAAACTGTTGACGAGACTTCTCAATCAAATCCTTGTACTGATTGAGGACTGCAGATTCTTGACGAGACTGAAAA----CAATTT-------TGACAATTTTTGG-----TAAAAGTGCCAATGCATGTA-ATACCTTGTTGACCAATGCGTTGATCTCATCAAGCTGATGAGAAAGCTTATTAGCAGTCTCTTGAGCATTCAGAAGTAGCGGATTTGTGGCGGTAGTTGAATCTCGCTTTCCATCGTTCACAATCTG
s cb4.chrX              17436162 319 - 21540570 ttttgaagGGTTTTCCCACTTCCTC---CCCG-----ACTCTTACTTTTGCATGAACATCAACGTTTGGAAGAATGCTCTTCATTTCCAGCGCAAATTGTTGGCGGGACTTTTCGATCAAGTCCTTGTACTGGTTGAGGACCGCGGACTCTTGGCGGGACTGAAAA----ACCTTT---------TGAATAATCAG--ATTTTGAGTAG-------AGCTAGATACCTTGTTAACCAGAGCATTGATCTCGTCGAGTTGATGGGTAAGCTTGTTGGCAGTTTCTTGGGCGTTGAGGAGGAGGGGATTGGTGGCGGTGGTTGAATCCTTCTTTCCATCGTTAACGATCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   221659 312 -  1794024 t---------ttctgcaactttctC---TCCA----CAAACTCACTTTAGCATGAACATCTACGTTAGGAAGAATGCTCTTCATCTCAAGGGCAAATTGTTGACGAGATTTCTCAATCAAATCCTTGTACTGGTTGAGAACAGCAGATTCTTGACGAGACTGAAGA----TAGTTTGAGAGGTTGTGAATAATTAGTCATTT--------------AACTA---ACCTTATTGACCAAAGCGTTGATTTCGTCGAGTTGATGAGAAAGTTTGTTGGCAGTCTCTTGAGCGTTGAGAAGAAGTGGGTTGGTAGCGGTAACCGCGTCCTTCTTTCCGTCGTTCACAATCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    249377 313 +   484378 t---------tttctccgttttcttatttttg----cttACTCACTTTGGCATGAATATCCACATTTGGAAGAATgcttttcatttcaagagCGAATTGTTGACGGGATTTCTCGATGAGATCCTTATACTGATTGAGAACCGCGGATTCTTGACGAGACTGAAACATTAACGTTT-------TCATAATGTTCAAGGTTCCTGAA-------------TT---ACCTTGTTGACCAGAGCGTTGATTTCATCAAGTTGATGAGAGAGCTTGTTGGCAGTCTCTTGAGCGTTGAGAAGCAATGGATTGGTAGCGGTGGCCGAATCTCTCTTTCCGTCGTTCACAATCTA
i caeSp111.Scaffold582  C 0 I 25
s caePb3.Scfld02_0       3379931 306 -  4147112 t---------ctcttccatctTTCT-----------CAAACTTACTTTTGCATGAATATCCACGTTTGGAAGAATACTCTTCATCTCGAGAGCGAATTGCTGACGTGACTTTTCAATCAAGTCTTTGTACTGGTTGAGGACAGCAGATTCTTGACGagactgaaaaac--acattC-------TAGAAATAGCGAA----CTAGGAATA-------GCTTA---ACCTTGTTGACCAAAGCGTTGATTTCATCAAGTTGGTGAGAAAGCTTGTTGGCAGTCTCTTGAGCATTGAGGAGCAATGGATTCGTGGCAGTTGATGAATCCTTCTTTCCGTCGTTCACGATCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   516254 325 +   720316 t---------ttcttcttttccttttctcttGTAATTCAACCTACTTTCGCGTGAACATCGACGTTCGGAAGAATGCTTTTCATCTCCAGAGCAAACTGTTTACGAGACTTGTCAATCAGATCCTTGTACTGATTAAGGACGGCAGACTCTTGACGAGCCTGAAAG----GTTTTT---AAATTATGTGTGTTTGA-----TCGAATAAATGTGCAATAGA---ACCTTGTTAACAAGAGAGTTGACTTCGTCGAGCTGGTGAGAAAGTTTGTTGGCAGTCTCCTGCGCATTTAAAAGAAGCGGGTTGGAGGTGGTGACTGAGTCTCTCTTTCCGTCATTCACAATctg
i caeJap4.Scaffold18213 I 3046 C 0

a score=1631.000000
s ce10.chrX              2685745 3 + 17718866 TAA
s cb4.chrX              17436481 3 - 21540570 gaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   221971 3 -  1794024 TAA
i caeRem4.Crem_Contig15 C 0 I 76
s caePb3.Scfld02_0       3380237 2 -  4147112 -AA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   516579 3 +   720316 taa
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    249690 25 +   484378 I

a score=-1077.000000
s ce10.chrX              2685748 5 + 17718866 ATGTC
s cb4.chrX              17436485 5 - 21540570 ttgtt
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3380240 3 -  4147112 --GTA
i caePb3.Scfld02_0      I 1 I 78
s caeJap4.Scaffold18213   516582 2 +   720316 --at-
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    249690 25 +   484378 I
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=-9638.000000
s ce10.chrX              2685753 143 + 17718866 CGAATTGAGaaaaataaatagttattattaaaaatttGCATTTAATCAAATATTAAACAAGCGTCTCTATTTTCAGT------------------TGCATTTAATTCCTTTTCGTAAA---------TGAGCTTGGAAGAGGTCCTT---TTTACAAATTTTGAAAAAAAAAC
s cb4.chrX              17436490 144 - 21540570 tgtttt---------------tgattcttgcccatctatattt-------------tctagctgttttatttttgctgtattttgtttttttctattcgttttgtttcttttcctcaaaatcttttcttagttttcaa-agatctttagattttcaagctGTTTCAAAAGGGC
i cb4.chrX              C 0 I 127
s caeJap4.Scaffold18213   516584  38 +   720316 ------------------------------------taaattt----------------------------------------------------tctataATATCCCTTTTGGAAGA-----------CATTTTCA------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3380243  78 -  4147112 I
e caeSp111.Scaffold582    249690  25 +   484378 I
e caeRem4.Crem_Contig15   221974  76 -  1794024 I

a score=-2697.000000
s ce10.chrX              2685896 101 + 17718866 AGGGTCGAAGTATTGCAACAAGACAAAAATCATAGGACCTGTCACATAATAACTTGTGTAGCAGTTCAAAAACAGGCACTAGATAGCCGAACTTCCGCAGA
s caeJap4.Scaffold18213   516622  10 +   720316 ---GCCG----------------------------------------------TTGTGT------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3380243  78 -  4147112 I
e cb4.chrX              17436634 127 - 21540570 I
e caeSp111.Scaffold582    249690  25 +   484378 I
e caeRem4.Crem_Contig15   221974  76 -  1794024 I

a score=-3110.000000
s ce10.chrX              2685997 77 + 17718866 CCGGACGACAGATTTAGTC-CGGTTTAGTCAAGTCCTAGTTTCCAAT---------ggtctaacga-----ctctgggtatt--ttattatgaa
s cb4.chrX              17436761 94 - 21540570 ctgaaaaacacattttgtaGCTATTCTGCCAAACTTTCACTTCCGACCTagaccaaaatctgaccaagATCTTCTGGGTACCCGTTATAATGCA
i cb4.chrX              I 127 I 154
s caeJap4.Scaffold18213   516632 35 +   720316 --------------------------------------------------------GGTCTAAGTTAG---TGCTAATTATCCTCtatcacaga
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3380243 78 -  4147112 I
e caeSp111.Scaffold582    249690 25 +   484378 I
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=-1349.000000
s ce10.chrX              2686074 92 + 17718866 ggtgtaagaccaaaatgtgctcattaaaagaatttcgcaatgaagtttctcaaaaaatttaaaaattttgtgtcattgcggttcaaaatttc
s caeJap4.Scaffold18213   516667 29 +   720316 -------------------------aaaaaaata-------ggagcT--------AATTTGAAAATATT-----------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3380243 78 -  4147112 I
e cb4.chrX              17436855 154 - 21540570 I
e caeSp111.Scaffold582    249690 25 +   484378 I
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=0.000000
s ce10.chrX              2686166 31 + 17718866 aaaCATAAATTTTTTTTTGGGTGTTAGGCTG
e caePb3.Scfld02_0       3380243 78 -  4147112 I
e caeJap4.Scaffold18213   516696  0 +   720316 C
e cb4.chrX              17436855 154 - 21540570 I
e caeSp111.Scaffold582    249690 25 +   484378 I
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=-2901.000000
s ce10.chrX              2686197  9 + 17718866 -TACCAA--------AAG
s caeSp111.Scaffold582    249715 17 +   484378 -CATCAAACTTCATTTAT
i caeSp111.Scaffold582  I 25 C 0
s caePb3.Scfld02_0       3380321  9 -  4147112 -TACCAA--------TAT
i caePb3.Scfld02_0      I 78 C 0
s caeJap4.Scaffold18213   516696  4 +   720316 AAAC--------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17436855 154 - 21540570 I
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=-899.000000
s ce10.chrX              2686206 2 + 17718866 AT-
s cb4.chrX              17437009 2 - 21540570 AT-
i cb4.chrX              I 154 C 0
s caeSp111.Scaffold582    249732 1 +   484378 -T-
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3380330 1 -  4147112 -T-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   516700 2 +   720316 -TC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   221974 76 -  1794024 I

a score=234579.000000
s ce10.chrX              2686208 285 + 17718866 ACCTTGCGAAGGTTATCAATGTAGTTTCTCCCGTCCACCTCTTGGCCACTGTCGACGCGTGCCTCAGCTTCGGCTCTTTGAAGAGCAGAAGTGACGTTTTCCCAGTTGGCGTGCTTAGCATCATCGACGGTTTGCTTGAGAATACTGGCATGCTCATTGATCGCATTGATGGTCTTCAGCTTGGCCTCAGTGGCTAAACGCACTTTTCCTTCAGCAGAGTGAATTGCGATTTTAAGCTTCTCCTCAAGTTCTG--------TAACTT-TAAACTGTTA-TGAAAATT----ACGCT------------------------------------------------------------------------------------TAA
s cb4.chrX              17437011 293 - 21540570 ACCTTGCGAAGATTATCGATGTAATTTCTTCCATCAACCTCTTGTCCGCTATCCACACGAGCTTCTGCTTCAGCTCTCTGAAGTGCAGCGGTCACGTTCTCCCAGTTGGCATTCTTAGCATCATCCACAGTTTGTTTCAAGACAGCGGCGTGCTCGTTGATGGCGTTGATAGTCTTCAGCTTGGCCTCAGTGGCAATACGGACCTTTCCTTCAGCCGAGTGAATAGCAATCTTGAGTCTATCCTCGAGTTCTGTAACATTAGAaggt-aaaatt-----tccaaactagaaatcat------------------------------------------------------------------------------------cag
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   222050 281 -  1794024 ACCTTGCGAAGACTGTCAATGTAGTTTCTTCCATCAACTTCCTGTCCACTATCGACACGAGCTTCAGCTTCAGCTCTTTGGAGAGCAGCAGTAACATTCTCCCAGTTCGCATTCTTGGCGTCATCGACAGTCTGCTTCAAGATGGTAGCGTGCTCGTTGATAGCATTGATGGTCTTCAGTTTGGCCTCAGTAGCGACGCGGACTTTTCCTTCCGCAGAGAAAATTGCGATCTTGAGTTTATCCtcgagttctg--------aaaatt-gtaatt-----tctAAGTT----GTTTT------------------------------------------------------------------------------------CGA
i caeRem4.Crem_Contig15 I 76 I 1
s caeSp111.Scaffold582    249734 282 +   484378 ACCTTGCGAAGATTATCAATGTAGTTTCTTCCATCAACCTCCTGTCCACTGTCAACACGAGCTTCTGCTTCGGCTCTTTGAAGAGCAGAAGTCACATTCTCCCAGTTGGCGTTCTTAGCGTCATCGACAGTCTGCTTCAGAACGGTGGCATGCTCATTGATAGCATTGATGGTTCTCAGTTTAGCCTCAGTAGCCACTCGAACCTTTCCTTCAGCTGAGTGAATAGCAACTTTGAGTCTGTCCTCAAGTTCTG--------AAAAGT-TAAAGT-----TCTGATCC----GTAATG-----------------------------------------------------------------------------------TAA
i caeSp111.Scaffold582  I 1 I 2
s caePb3.Scfld02_0       3380332 366 -  4147112 ACCTTGCGAAGATTATCAATGTAGTTTCTTCCGTCGACTTCCTGGCTGCTGTCAATACGAGCTTCAGCCTCAGCTCTCTGGAGAGCAGCGGTCACGTTCTCCCAGTTGGCATTCTTAGCATCATCGACAGTCTGCTTCAAGATGCTAGCATGCTCGTTAATAGCGTTGATAGTCTTCAGCTTAGCTTCAGTAGCAAAACGGACTTTTCCTTCAGCAGAGTGAATAGCAATCTTGAGTCTATCCTCgagctctg--------aaaattcttaaat-----TGGAACTC----GTAATGTCCAAAAGCTTTGTCCAAAGCTAGATCTGGGATTGATATGGTCTGACTACTGGTTGCAAAATGAGAACCGTAAATACAACGCCTAA
i caePb3.Scfld02_0      I 1 I 195
s caeJap4.Scaffold18213   516702 286 +   720316 ACTTTGCGAAGGTTGTCAATGAAATTGCGTCCATCGACCTCTTGTGTGCTGTCCTGACGAGCCTCAACCTCAGCTCTTTGAAGCGCCGCGGTTACGTTCTCCCAGTTAGCGTGTTGAGCGTCGTCCACAGTCTGTTTCAAAATGCTGGCGTGCTCATTAATAGCATTGATGGTCTTCAGCTTGGCCTCAGTAGCAACACGGACCTTTCCCTCAGCCGAATGAATTGCGTTTTTCAATCTATCTTctagttctg--------aaattt-tgaaatttcgttGGAAATT----ACCTG------------------------------------------------------------------------------------TAA
i caeJap4.Scaffold18213 C 0 C 0

a score=368903.000000
s ce10.chrX              2686493 690 + 17718866  
s cb4.chrX              17437305 700 - 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   222332 690 -  1794024  
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    250018 702 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3380893 692 -  4147112  
i caePb3.Scfld02_0      I 195 C 0
s caeJap4.Scaffold18213   516988 690 +   720316  
i caeJap4.Scaffold18213 C 0 I 858

a score=-9730.000000
s ce10.chrX              2687183 68 + 17718866 GT---AATAAATTTTACAACGAAATT--------TTATATAAATCAAGAAAAAATCAAAATAATCAAGAGAGTGCAATC
s cb4.chrX              17438005 60 - 21540570 TT---AATT-ATTATTGATTAAAAATAAGACTGATTg-------catcaaaaatcaagaaaatccgCGTGA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223022 53 -  1794024 tt---aatcaattttttgctaagaat--------tta-------tgaagaaaaacgaaacaacATTGGAGA--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    250720 47 +   484378 Gt---gatt--tttctgagt--------------ttg-----aatgagaaaagatgaagaaaatccGATAA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3381585 48 -  4147112 CTTCcgatt--ttattcaata-------------ttG-----ATTACGGAAAGATCagg---tttgaaaaa--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   517678 858 +   720316 I

a score=57527.000000
s ce10.chrX              2687251 70 + 17718866 GAAAAAGAAATAAACATATTGTTTAGTGTTCGAAGATTAAGTTGCGCGTCATGCACGAGAAACGCGCCAG
s cb4.chrX              17438065 70 - 21540570 AAGAAAgccacaaacattttgtttagTGTTCGAAGATTAAGTTGCGCGTCATGCACGAGAAACGTGCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223075 70 -  1794024 TAAAAAGATACAAACATCTTGTTTAGTGTTCGAAGATTAATTTGCGCGTCATGCACACAAAATGCGCCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    250767 70 +   484378 GATAGAGAAATAAACATGTTGTCTAGTGTTCGAAGATTAATTTGGGCGTCATGTACGAGAAACGCGCCAG
i caeSp111.Scaffold582  C 0 I 663
s caePb3.Scfld02_0       3381633 70 -  4147112 gaaaaagaaacaaacaagtTGTTTAGCGTTCGAAGATTAATTTGGGCGTCATGCACGGAAAATGCGCCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   518536 70 +   720316 gaaaacatgATAAACAAGTAATGTTTGGGTGAACATTTATTTTGCGCGTCATGCACAGCAAGTACGTCAG
i caeJap4.Scaffold18213 I 858 C 0

a score=1090.000000
s ce10.chrX              2687321 2 + 17718866 CA
s cb4.chrX              17438135 2 - 21540570 CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223145 2 -  1794024 CA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3381703 2 -  4147112 CA
i caePb3.Scfld02_0      C 0 I 693
s caeJap4.Scaffold18213   518606 2 +   720316 CA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    250837 663 +   484378 I

a score=67.000000
s ce10.chrX              2687323 1 + 17718866 A
s cb4.chrX              17438137 1 - 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223147 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold18213   518608 1 +   720316 A
i caeJap4.Scaffold18213 C 0 I 554
e caePb3.Scfld02_0       3381705 693 -  4147112 I
e caeSp111.Scaffold582    250837 663 +   484378 I

a score=104.000000
s ce10.chrX              2687324 4 + 17718866 TCGA
s cb4.chrX              17438138 4 - 21540570 TCGA
i cb4.chrX              C 0 I 1072
s caeRem4.Crem_Contig15   223148 3 -  1794024 TCG-
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3381705 693 -  4147112 I
e caeJap4.Scaffold18213   518609 554 +   720316 I
e caeSp111.Scaffold582    250837 663 +   484378 I

a score=1042.000000
s ce10.chrX              2687328 19 + 17718866 TGTCTGTGTATCTTTTGTA
s caeRem4.Crem_Contig15   223151 19 -  1794024 TGCTTGCGCATCTCTTGCA
i caeRem4.Crem_Contig15 C 0 I 651
e caePb3.Scfld02_0       3381705 693 -  4147112 I
e caeJap4.Scaffold18213   518609 554 +   720316 I
e cb4.chrX              17438142 1072 - 21540570 I
e caeSp111.Scaffold582    250837 663 +   484378 I

a score=0.000000
s ce10.chrX              2687347 1328 + 17718866  
e caePb3.Scfld02_0       3381705  693 -  4147112 I
e caeJap4.Scaffold18213   518609  554 +   720316 I
e cb4.chrX              17438142 1072 - 21540570 I
e caeSp111.Scaffold582    250837  663 +   484378 I
e caeRem4.Crem_Contig15   223170  651 -  1794024 I

a score=14.000000
s ce10.chrX              2688675 6 + 17718866 AATGCT
s cb4.chrX              17439214 6 - 21540570 AAAACg
i cb4.chrX              I 1072 C 0
e caePb3.Scfld02_0       3381705 693 -  4147112 I
e caeJap4.Scaffold18213   518609 554 +   720316 I
e caeSp111.Scaffold582    250837 663 +   484378 I
e caeRem4.Crem_Contig15   223170 651 -  1794024 I

a score=273.000000
s ce10.chrX              2688681 1 + 17718866 T
s cb4.chrX              17439220 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223821 1 -  1794024 t
i caeRem4.Crem_Contig15 I 651 C 0
e caePb3.Scfld02_0       3381705 693 -  4147112 I
e caeJap4.Scaffold18213   518609 554 +   720316 I
e caeSp111.Scaffold582    250837 663 +   484378 I

a score=7571.000000
s ce10.chrX              2688682 20 + 17718866 AAGAGACGCAGAGTATATTC
s cb4.chrX              17439221 17 - 21540570 aggagacgcagac---atcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   223822 17 -  1794024 gagagacggagag---aagt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    251500 17 +   484378 aagagacgcagag---aaac
i caeSp111.Scaffold582  I 663 C 0
s caePb3.Scfld02_0       3382398 17 -  4147112 aagagacggagag---aaac
i caePb3.Scfld02_0      I 693 C 0
e caeJap4.Scaffold18213   518609 554 +   720316 I

a score=122903.000000
s ce10.chrX              2688702 383 + 17718866 ACCGTAGT-TTGAAGCG-AGGGTCTCGAAGCGATGTGGCAGTGAGAGTGGGGCTGCCTTTTCCTCGGGTTT----GCACC--CTCTCAT--------CCGCCG-----CTATTGATTCTCTT-TCTTTTCTCAATTTCCCTCGGGCTCGA-TGGGCTC------------GCTGCTTCTTTTCATTTTCGT--GTTT---TTTTTTC---GTCAGCAGGCAC----ATTGAATAAATATTCCGAGGCA--------------GGGTCACAGAAAATTCTATGTCAACTTTTCTTTACTTTCT----TATTTAACTCTTACTTTGTCCCATTTAGACG-----------------------TTTCCAGAA-AATGTTTT---TCTCCAAGCTTGGATCATTATGCACTAGGATGGATTTTCGTGATGCCAATATTCCAGCCGCCTCTTTCCACACCGTTGCAGCTATTCTGGTAAG
s cb4.chrX              17439238 356 - 21540570 ATCGTAGTGCCTGCGCG-AGGGTCTCGCCGCGATTTGACGGGAAGAGTG--------TGTTTCGGAAAGCT----GCGCTTCCTCTCATCGGGAGGCCTTTCG-----CTATTGATtc-----tcttttctcaatttccctcCGGCTCGCGCGGACCCCCGGAGCCGGCGGcagatttttgtcaatttc----ttTTCGT----------------------------TGGAT-----TT-CCAGAAG--------------------TTCAGATTCCTCT-CCACtttttttCGGCTAG---------CAAAATCCTTT--CGTTTAATCGTTTCC-----------------------TTTTCAGAAGGATGTTCC---TCTCCAAACTTGGCACCGTTTGTACACGGATGGATCTTCGCGAGGCCAACATTCCGGCAACCGTGTTCCACACTGTTGCAGCAATCTTGGTAAG
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   223839 403 -  1794024 ACCGTAGT-TTGGGGCG-CGGGTCTTGCAGCGAATTGCCGTTGAGAGTG-------CTGCCTCAAAGCCCT----GCGCT--CCCTCATC------CCTTTTG-----CTAttgattctcttttcttttctcaatttccctcGGGCTCGT-CGGGCCcac-------gcttcttcttcttttcattttcatttttttcgttctttct---GTTAG-AGCAGCCGCTGCTGAATAAATATT-CGAGGCGGCCCATCGTAATTGAACTTCTTCAgacttttct--cactttcttctGCCCATTT----CTCCCAACTCTTCTAACtttcaaattccaaa-----------------------ctttcagAA-GATGTTTC---TCTCCAAGCTTGGAGCCCTGTGCACGAGGATGGATTTCCGTGAAGCCAACCTTCCAGCGGCTTCGTTTCATACAGTTGCAGCTATTTTGGTATG
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    251517 383 +   484378 atCGTAGT-TTGGGCAG-TGGGTCTCGTTGCGACTGGCCGTCAGGAGTG--------TTTCGGGAAGCGCTTGCGGCGCA--CCCTCAT-------CTCTTCG-----CTATTGATTCTCTT-tcgtttctcaatttccctCGGGCTCGC-CG-----------------Gctgcttcttttcattttcat--ttttcactcttttc---GGCAG-AGTTGC--CCGCTGAATACATATT-CAAGACG-----------------TCGTTCagattgaaat-caaattttctacTTCCTTTTgaagctttgaaaaattctcttttcaaatattcatcttcag------------------ttttcagaa-aatgtttc---tctCCAAACTTGGTACCATTTGTACGAGGATGGATTTCCGTGAAGCCAATATTCCAGCTGCATCATTCCATACTGTCGCAGCTATTTTGGTATG
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3382415 395 -  4147112 aTCGTAGT-TTTGGAGGCTGGGTCTCGCAGCGGTTGGCCATCGAGAGTG--------TGGTCGGAAGGGCTTGCGGCGCA--CCCTCAT-------CCCTTCG-----CTATtgattctcttctcttttctcaatttccctCGGGCTCGC-CGGGC-----------TCCGTcgcttcttttcattttcat--tttt---tcttctc---gtgaG-AGAAGCTGCCactgaataaatatt-caagACG---------------------CCAGATTgccat-ccaacttttttgaacctcTT----CCTTGA-----TCTCGTTTTCAATCTTTCTCCTCCACATTCCTTGAATATATTCTTTTTAGAA-GATGTTTC---TCTCCAAACTTGGTACCATATGCACAAGAATGGACTTCCGTGATGCCAACATTCCATCAGCATCGTTCCATACGGTTGCAGCTATTTTGGTGAG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   519163 374 +   720316 ACCGTAGT-GTGAAACgcagggtctcgccacgattgaCCGACAAGACTG--------CGCTTTTGAGGTCC----TCACG--TCCT----------TCCTTCGGCCCTCTATTGATTCACTC-TGCCTTCTCAATTTCCCTCGGGCTC---CGA----------------GCTGCTTCTTTTC----TCAT--TCCACGTTCTCTTCTGGGAAAG-AAAGACAACCGTTGAGCAAATATT-CTAGGCG--------------CATCTCTCTTGATTAACCC--CTTTTTTCTTGGTTCAGTT----GTTCTAAATAGT----TAGATAAactccaaa-----------------------ttttcagaa-catgTTTCTCGTCTCAAAGATTTCGTCCATTTTTAATGGTATGGACTTTCGCGAAACCAATGTTTCAGCGACAATATTTCATAGTCTAGCGGCAACATTGGTAAG
i caeJap4.Scaffold18213 I 554 C 0

a score=-1323.000000
s ce10.chrX              2689085 11 + 17718866 --CTTTTG--CACAT
s cb4.chrX              17439599 11 - 21540570 --ATCttt--gagaa
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold582    251904 13 +   484378 --CTTTTGATAAGAG
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3382815 11 -  4147112 --atttca--tagaa
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   519537 13 +   720316 TTAATTTA--TGCAT
i caeJap4.Scaffold18213 C 0 I 792
e caeRem4.Crem_Contig15   224242 31 -  1794024 I

a score=-3877.000000
s ce10.chrX              2689096 24 + 17718866 GA-CTTCAATAATAGTATTCTCCAA
s cb4.chrX              17439610 18 - 21540570 aa---tcaaatataAGATTTT----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    251917 16 +   484378 AACATTTAGATACACG---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3382826 17 -  4147112 aaatttaagaaaaatga--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   519550 792 +   720316 I
e caeRem4.Crem_Contig15   224242 31 -  1794024 I

a score=-427.000000
s ce10.chrX              2689120 2 + 17718866 TA
s caeRem4.Crem_Contig15   224273 2 -  1794024 TT
i caeRem4.Crem_Contig15 I 31 C 0
s caeSp111.Scaffold582    251933 2 +   484378 CT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3382843 2 -  4147112 at
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   519550 792 +   720316 I
e cb4.chrX              17439628 0 - 21540570 C

a score=107834.000000
s ce10.chrX              2689122 147 + 17718866 TTTCAGGCAATTTTCGCAATGATGTCTACAGACTGGATTCTCATTGAAGATATGAGCACAAAAAACGGCACAACCGACATCGACGCTTTGCAGGTGGCTCAACTTTACATGAAGAACACAGAACCCTGTCATGCAATTGGTAAGTCT
s cb4.chrX              17439628 146 - 21540570 -TTCAGGCTGTCTTTGCAATGCTGTCCACCGATTGGATTCTCGTGGAGGATATGAGCACTAGAAATGGGTCAATTGATATTGATGTGCTGCAGGCCGCTCAGATCTACATGAAGAATGCGGAGCCTTGCCATGctattggtgagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   224275 147 -  1794024 TTCCAGGCTATCTTTTCGATGATGTCCACTGATTGGATTCTCATTGAGGATATGAGCGCCAAGAATGGAACCTTTGCCTTGGATTCACTTGAAATCGCACAGATGTTCATGAAGAACTCCGAGCCATGCCGTGCAATTGGtaaacct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    251935 147 +   484378 TTTCAGGCAATCTTCGCAATGATGTCAACCGATTGGATTCTAATTGAAGACATGAGTGCTAAGAACGGAACTTTGGATATTGGAGTTCTCCAAGCAGCAGAGCTTTATATGAAAAACACAGAACCGTGTCATGCCATTGGTACGTTT
i caeSp111.Scaffold582  C 0 I 260
s caePb3.Scfld02_0       3382845 147 -  4147112 tttaagGCAATCTTCGCCATGATGTCAACCGACTGGATTCTCATTGAAGACATGAGTGCCAAGAATGGAACATTGGACCTTGCAGCCATTACTGCAGCACAATTGTATATGAAGAACTCGGAGCCATGCCACGCTATTGGTACGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   520342 147 +   720316 TTTTAGGCAATCTTCGCAATGTTGTCAACAGATTGGATTCTAATTGAAGACATGAGTGTGCGCAATGGAAGTTTAGACGCTGATGCTGTCCAAGCTGTGCAGTTTTACATGAAAAACACAGAGCCTTGTCATGCCATTGGTAAGacc
i caeJap4.Scaffold18213 I 792 C 0

a score=695.000000
s ce10.chrX              2689269 3 + 17718866 TGT
s cb4.chrX              17439774 1 - 21540570 --t
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   224422 1 -  1794024 --t
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3382992 3 -  4147112 TGT
i caePb3.Scfld02_0      C 0 I 213
s caeJap4.Scaffold18213   520489 3 +   720316 ttt
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    252082 260 +   484378 I

a score=273.000000
s ce10.chrX              2689272 1 + 17718866 T
s cb4.chrX              17439777 1 - 21540570 t
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold18213   520492 1 +   720316 t
i caeJap4.Scaffold18213 C 0 I 33
e caePb3.Scfld02_0       3382995 213 -  4147112 I
e caeSp111.Scaffold582    252082 260 +   484378 I
e caeRem4.Crem_Contig15   224423 0 -  1794024 C

a score=77.000000
s ce10.chrX              2689273 3 + 17718866 TAG
s cb4.chrX              17439778 3 - 21540570 gag
i cb4.chrX              C 0 I 77
e caePb3.Scfld02_0       3382995 213 -  4147112 I
e caeJap4.Scaffold18213   520493 33 +   720316 I
e caeSp111.Scaffold582    252082 260 +   484378 I
e caeRem4.Crem_Contig15   224423 0 -  1794024 C

a score=902.000000
s ce10.chrX              2689276 34 + 17718866 CATTGCAAAAAAATAAATTGTGTAGAAGCTGAGA
s caeRem4.Crem_Contig15   224423 29 -  1794024 -----taaaaaattacagaatgtAGTTGTTGAGA
i caeRem4.Crem_Contig15 C 0 I 117
e caePb3.Scfld02_0       3382995 213 -  4147112 I
e caeJap4.Scaffold18213   520493 33 +   720316 I
e cb4.chrX              17439781 77 - 21540570 I
e caeSp111.Scaffold582    252082 260 +   484378 I

a score=0.000000
s ce10.chrX              2689310 714 + 17718866  
e caePb3.Scfld02_0       3382995 213 -  4147112 I
e caeJap4.Scaffold18213   520493  33 +   720316 I
e cb4.chrX              17439781  77 - 21540570 I
e caeSp111.Scaffold582    252082 260 +   484378 I
e caeRem4.Crem_Contig15   224452 117 -  1794024 I

a score=91.000000
s ce10.chrX              2690024 1 + 17718866 T
s caeJap4.Scaffold18213   520526 1 +   720316 t
i caeJap4.Scaffold18213 I 33 C 0
e caePb3.Scfld02_0       3382995 213 -  4147112 I
e cb4.chrX              17439781 77 - 21540570 I
e caeSp111.Scaffold582    252082 260 +   484378 I
e caeRem4.Crem_Contig15   224452 117 -  1794024 I

a score=316198.000000
s ce10.chrX              2690025 481 + 17718866  
s cb4.chrX              17439858 490 - 21540570  
i cb4.chrX              I 77 I 6
s caeRem4.Crem_Contig15   224569 536 -  1794024  
i caeRem4.Crem_Contig15 I 117 I 31
s caeSp111.Scaffold582    252342 531 +   484378  
i caeSp111.Scaffold582  I 260 C 0
s caePb3.Scfld02_0       3383208 533 -  4147112  
i caePb3.Scfld02_0      I 213 C 0
s caeJap4.Scaffold18213   520527 540 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-4876.000000
s ce10.chrX              2690506 26 + 17718866 TTGTATTCTTTTAAATTT---TAAGTGTT
s cb4.chrX              17440354 15 - 21540570 -----------Tcgtatt---taaatttt
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold582    252873 20 +   484378 ------CCGCTTAAGATG---TGATTGAT
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3383741 20 -  4147112 ------CGGAGGAGAAAA---TGATTTAT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   521067 21 +   720316 --------GTATAATTTTGGGTAACTGTT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   225105 31 -  1794024 I

a score=119524.000000
s ce10.chrX              2690532 137 + 17718866 TCATA-TTTTCAGCAATCGCAAAACTCGAATGCGCAGAATTGACAACCAGCGTCTTCTTTGTGCACGCTCACTACGCTCATGGAGGGATGCAGGGCGCCGTTCGGAGGACGTTTGTCCGATCGTTGATTTTGAGAGGT
s cb4.chrX              17440369 132 - 21540570 ------ttttcagcaatcgCAAGACCCGTATGCGTCGCATCGACAACCAACGTCTTTTATGTGCTCGCTCGCTCCGTTCGTGGCGAGATGCTGGACGCCGTCCGGATGATGTTCGCCCGATTGTCGACTTTGAGAGGT
i cb4.chrX              C 0 I 431
s caeRem4.Crem_Contig15   225136 138 -  1794024 ttatattttataGCAACCGCAAGACTCGCATGCGCCGTATCGACAACCAACGTCTCCTCTGTGCACGCTCGCTTCGCTCTTGGAGAGACGCCGGACGCCGTCCAGAAGACGTCCGCCCAATCGTTGATTTTGAAAGGT
i caeRem4.Crem_Contig15 I 31 I 389
s caeSp111.Scaffold582    252903 137 +   484378 -TTCCTTCTGCAGCAACCGCAAAAGCCGAATGCGTCGCATCGACAACCAACGTTTGTTGTGCGCTCGTTCACTTCGTTCGTGGAGAGATGCCGGACGTCGTGCTGAAGACGTCCGTCCGATTGTTGACTTCGAGAGGT
i caeSp111.Scaffold582  I 10 I 177
s caePb3.Scfld02_0       3383768 137 -  4147112 -CACTCTTTGCAGCAATCGAAAAGTTCGGATGCGCCGTATTGACAACCAACGACTTCTCTGTGCCCGCTCTCTTCGCTCATGGAGAGATGTCGGACGTCGTCCGGAGGATTCTCGCCCGATAGTCGACTTCGAAAGGT
i caePb3.Scfld02_0      I 7 I 334
s caeJap4.Scaffold18213   521088 134 +   720316 ----TAATTTTAGCAACCGCAAGGTCCGCATGCGTCGCATCGACAATCAGCGTCTTTTGTGTGCTCGCTCTCTTCGCTCCTGGAGAGATGCTGGACGACGACCGGAAGATGTTCGCCCAATTGTTGATTTTGAAAGGT
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2690669 4 + 17718866 TTGT
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e caeJap4.Scaffold18213   521222 0 +   720316 C
e cb4.chrX              17440501 431 - 21540570 I
e caeSp111.Scaffold582    253040 177 +   484378 I
e caeRem4.Crem_Contig15   225274 389 -  1794024 I

a score=710.000000
s ce10.chrX              2690673 41 + 17718866 TATGTTTGAACAAATAACAAATTTCGAA----TTGGAAGTTGAAA
s caeJap4.Scaffold18213   521222 43 +   720316 --AATtagagaaaaaatcaatttttgcattttttaaaagttgtaa
i caeJap4.Scaffold18213 C 0 I 4024
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e cb4.chrX              17440501 431 - 21540570 I
e caeSp111.Scaffold582    253040 177 +   484378 I
e caeRem4.Crem_Contig15   225274 389 -  1794024 I

a score=0.000000
s ce10.chrX              2690714 726 + 17718866  
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e cb4.chrX              17440501 431 - 21540570 I
e caeSp111.Scaffold582    253040 177 +   484378 I
e caeRem4.Crem_Contig15   225274 389 -  1794024 I

a score=583.000000
s ce10.chrX              2691440 10 + 17718866 AAAATTGTTT
s caeRem4.Crem_Contig15   225663 10 -  1794024 aaaacagttt
i caeRem4.Crem_Contig15 I 389 C 0
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e cb4.chrX              17440501 431 - 21540570 I
e caeSp111.Scaffold582    253040 177 +   484378 I

a score=-324.000000
s ce10.chrX              2691450 20 + 17718866 ---AAACAAATTATTCCAAT------------------ATT
s cb4.chrX              17440932 38 - 21540570 ---AAACCAATTATTCTGATCCGCAGTCGTAATAATCAAAG
i cb4.chrX              I 431 C 0
s caeRem4.Crem_Contig15   225673 20 -  1794024 taaaatccaatcaattcgat---------------------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e caeSp111.Scaffold582    253040 177 +   484378 I

a score=131.000000
s ce10.chrX              2691470 6 + 17718866 CTTGTT
s cb4.chrX              17440970 6 - 21540570 TCTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   225693 1 -  1794024 -----t
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    253217 6 +   484378 CTTCAT
i caeSp111.Scaffold582  I 177 C 0
e caePb3.Scfld02_0       3383905 334 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I

a score=27105.000000
s ce10.chrX              2691476 456 + 17718866  
s cb4.chrX              17440976 562 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   225694 530 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    253223 545 +   484378  
i caeSp111.Scaffold582  C 0 I 2606
s caePb3.Scfld02_0       3384239 485 -  4147112  
i caePb3.Scfld02_0      I 334 C 0
e caeJap4.Scaffold18213   521265 4024 +   720316 I

a score=1759.000000
s ce10.chrX              2691932 4 + 17718866 CTTT
s cb4.chrX              17441538 4 - 21540570 CTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   226224 4 -  1794024 CTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3384724 4 -  4147112 CTTT
i caePb3.Scfld02_0      C 0 I 4161
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e caeSp111.Scaffold582    253768 2606 +   484378 I

a score=-2358.000000
s ce10.chrX              2691936  2 + 17718866 TT--------------------------
s cb4.chrX              17441542 28 - 21540570 TCTCAAAAGTATTTGAACacacattttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   226228  3 -  1794024 TCT-------------------------
i caeRem4.Crem_Contig15 C 0 I 3793
e caePb3.Scfld02_0       3384728 4161 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e caeSp111.Scaffold582    253768 2606 +   484378 I

a score=744.000000
s ce10.chrX              2691938 25 + 17718866 CAAAAAATTTTTTACATTATGGTAA
s cb4.chrX              17441570 25 - 21540570 ccaatttttctttgaattatAATAA
i cb4.chrX              C 0 I 4508
e caePb3.Scfld02_0       3384728 4161 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e caeSp111.Scaffold582    253768 2606 +   484378 I
e caeRem4.Crem_Contig15   226231 3793 -  1794024 I

a score=0.000000
s ce10.chrX              2691963 1469 + 17718866  
e caePb3.Scfld02_0       3384728 4161 -  4147112 I
e caeJap4.Scaffold18213   521265 4024 +   720316 I
e cb4.chrX              17441595 4508 - 21540570 I
e caeSp111.Scaffold582    253768 2606 +   484378 I
e caeRem4.Crem_Contig15   226231 3793 -  1794024 I

a score=3948.000000
s ce10.chrX              2693432 78 + 17718866 TTGGTCAATATTTGCTTTTTATCATAACTTCCCTCCTGTCATTTTTGATTGTTTTGTGAGTGAGAGTATGCAAATGGT
s caeJap4.Scaffold18213   525289 70 +   720316 TCAGTCAATATTTGCTCTTTCTCAAAAGTTACG--CTGTCATTTTTGATTGTTCTGT------GAGTATGCAAATGGT
i caeJap4.Scaffold18213 I 4024 I 272
e caePb3.Scfld02_0       3384728 4161 -  4147112 I
e cb4.chrX              17441595 4508 - 21540570 I
e caeSp111.Scaffold582    253768 2606 +   484378 I
e caeRem4.Crem_Contig15   226231 3793 -  1794024 I

a score=0.000000
s ce10.chrX              2693510 1294 + 17718866  
e caePb3.Scfld02_0       3384728 4161 -  4147112 I
e caeJap4.Scaffold18213   525359  272 +   720316 I
e cb4.chrX              17441595 4508 - 21540570 I
e caeSp111.Scaffold582    253768 2606 +   484378 I
e caeRem4.Crem_Contig15   226231 3793 -  1794024 I

a score=631.000000
s ce10.chrX              2694804 4 + 17718866 CTTC
s caeSp111.Scaffold582    256374 4 +   484378 cttt
i caeSp111.Scaffold582  I 2606 C 0
s caePb3.Scfld02_0       3388889 4 -  4147112 cctt
i caePb3.Scfld02_0      I 4161 C 0
e caeJap4.Scaffold18213   525359 272 +   720316 I
e cb4.chrX              17441595 4508 - 21540570 I
e caeRem4.Crem_Contig15   226231 3793 -  1794024 I

a score=207.000000
s ce10.chrX              2694808 1 + 17718866 C
s caeRem4.Crem_Contig15   230024 1 -  1794024 C
i caeRem4.Crem_Contig15 I 3793 C 0
s caeSp111.Scaffold582    256378 1 +   484378 t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3388893 1 -  4147112 c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   525359 272 +   720316 I
e cb4.chrX              17441595 4508 - 21540570 I

a score=3710.000000
s ce10.chrX              2694809 20 + 17718866 AAAGTTCACCACCTTTTTTT
s cb4.chrX              17446103 20 - 21540570 AAAGTTCACTTTTCGCTTGT
i cb4.chrX              I 4508 C 0
s caeRem4.Crem_Contig15   230025 18 -  1794024 AAAGTTCA--TTTACCTTGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256379 18 +   484378 ataattca--actacttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3388894 18 -  4147112 aaaattta--ctttttcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   525359 272 +   720316 I

a score=66310.000000
s ce10.chrX              2694829 139 + 17718866 CTCTAACCACACCATACAAATAG-AACTGTT--ATCAATCTGAAATTATTTAAAAAGACGTCGCTGA-GATAAGAGCGTCAGTCCTTTACACGCGGCACGCAATGAGAGGAGCACTGCAGTTACTACTTTTTGTTGGTACAGT
s cb4.chrX              17446123 140 - 21540570 TACTGACCACGCCATGCAAACAC-AACTGTTAAACTGATAAGAATTCATTT-AAGAGCCGACGCAGT-GAAATTGAAGTTAGTTGTGTGCATGCGAAACGCGATGCGAGTCGATCTCAAGCTTCTAGTCTTCTTCTGTCTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   230043 136 -  1794024 T-CTAACCACGCCATACAAACAT-TGATGTT--atcaatttgaaatcattt-AAGAGTCGTCAAGACAGATAACAAAGTCAGT--TGTGCATGCGACAAGCCATGGGAGACGTTTTGAAGTTACTACTTCTATTTTGTATTGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256397 137 +   484378 tcttaaccACGCCATACAAACAAGAGTTGTT--ATCAAATCGAAATCATTT-AAGACCCGTCGGAGA-GATAACAGAATCAGT--TGTGCCTGGAAAGAGTCATGGGAGACACTTTGAAGTTCTTGCTTCTCTTCTTGGCTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3388912 136 -  4147112 cgcTAACCACGCCATACAAACAC-AACTGTT--ATCGAGACAAAATTATTT-AAGAGACGTCTCAGA-GATAACAAAGTCAGT--TGTGCCTGCGGAGAACCATGGGTGACGGTCTGAAGTTATTGCTTCTATTCTGCTTCGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   525631 136 +   720316 CTTTAAACACGCCATACAAACAC-ATCTGCT--ATCAGTTTAAAGTTGTTT-AAAAGGCATCGGAAA-GATAACGGAGTCATT--TCCAACCGTCACAAGACATGAGGGACTTTATGAAGATACTCCTTTTACTGAGTATCGT
i caeJap4.Scaffold18213 I 272 I 539

a score=-51323.000000
s ce10.chrX              2694968 142 + 17718866 CACTCTGGTGAGA--CCT--------------------------------------------------------ATTGTACACTTTGAAA-ATATTCTAGTTAAATTTT----TATTCAGGTGGCC------------AGCAAGCTACATGAGTCCCCTTACGTTACCGAATGCTTTGATGTA--------------------------------TGTTTAAATTGTTTTTTTG-----------------------TAA-------------------------------GTTCTCAATTTG
s cb4.chrX              17446263 142 - 21540570 CTCTTGGGTAAGA-TTCA--------------------------------------------------------------TACAATTTTG-GAGTCAGTagagaattttgggatttacAGGGAGCTGCCGCAATCTACGGAAAGGAGC------------------TCAAGTGTCCAG---------------------------------CGGTTagtttgttttggtttttc-----------------------taaTTAATTCAATCg-------------------ata----acatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   230179 272 -  1794024 CACTGCGGTAAGT-ATCAGTTTCTCATGGATCTTCTCAGAAATACTTATGATGCATTAGATGCTTAAGAATAACAtaaactacatttttt-ttgttatctttcAAAATCGGTATGTATGGGAAACT-----------TAGAAAGCAACACCAACT----------ATTAACTTTTCAGttata----tttgaaattaaatttcttaATTTACAGGTGGCTGGATCTGCTTTTCCAAGGAAAAATAAATGCCCTGAGGTAAGAAAAACTGTCGTTGagagaaaaattccaaaatg----acGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256534 145 +   484378 TGCAGCGGTAAGTAATCA--------------------------------------------------------ATAAAGCTTGTTCCCAGATTATGAATGAAAGTT-CCAAATTTTCAGGTGACCGGT---------AAAGTATATCGTAAATT------GGAGAACAAATGCTTGGAGGTA---TATTGA---------------------AAAGACTGAATGGGAGTT--------------------------TAA-------------------------------ATG-----CGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389048 154 -  4147112 CACTGCGGTACGT--TGA--------------------------------------------------------ACAATTCAGGTATTCA-ATATTAACTTTCAGTTATTATATTTGCAGGTAAGCGGTACCATCTTCAGAAAACACGGCGAGGC------TAAGCGTCAGTGCCCGGAGGTAAAGGATTGGT------------------CCAACGCCTGAATGATA-----------------------------TAA-------------------------------AT------CATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   525767 539 +   720316 I

a score=48717.000000
s ce10.chrX              2695110 77 + 17718866 TTTTAGGGGC-ACTACAACTTCAGA------GGCGTCTGCTTCCAATGCACTCCATGTGGTGACTTCATGTACGAGCTGTAAGT
s cb4.chrX              17446405 78 - 21540570 ttttcaggacaAATACAGATTCAAA------AACTCGTGCTTCAACTGTACGCCATGCGGTGATTTCATGTACGAACGGTAAGT
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   230451 77 -  1794024 TTAAAGGGAC-AATACAAGTTCAAG------AATGCCTGCTTCCAATGCACACCATGCGGAGACTTCATGTATGAACAGTAAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256679 76 +   484378 TTTCAGGGAC-AGTTCAGCTTCAAG------GGCACATGCTTCCCATGCACACCATGCGGAAACTTCATGTATGAACAGTgag-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389202 75 -  4147112 TTT-AGGGGC-AATACAACTTCAAG------GGATCTTGCTTCCAGTGCACTCCATGTGGCAGCTTCATGTATGAACAGTGAG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   526306 83 +   720316 TTTTAGGGTC-AATATAACAACGAAGGACTTGGAATTTGCTTCAAATGCACTCAATGCGCAGAGTTCCTTTATGAGCAGTGAGc
i caeJap4.Scaffold18213 I 539 C 0

a score=-3796.000000
s ce10.chrX              2695187 23 + 17718866 AATTTTTT----GTTGATATTTTTTAT
s caeRem4.Crem_Contig15   230528 14 -  1794024 -------------TTACAATTTCTTCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256755 12 +   484378 --------------tttagttttttc-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389277  9 -  4147112 --------------TTTCATTCC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   526389 27 +   720316 gatttttttctcgtttttattttttat
i caeJap4.Scaffold18213 C 0 I 464
e cb4.chrX              17446483 35 - 21540570 I

a score=-15850.000000
s ce10.chrX              2695210 173 + 17718866 GCCAAATTCATTCAAAAATTACGGGACACTGTCTCATCGTGGAATCTGTAATAAAAAGTCTGTAAACTGCCAGATTTAGCGGTTAGATCTTTAGATACTTGAAAAACCAATTCCTTATGAAATTGTAAAACATAAAACAATCTGACAGCCCGTGTATTCAAACGGTCTTGTCA
s caeRem4.Crem_Contig15   230542  60 -  1794024 GTC-------------------------CTGATTCATT--------------------CCTCTAAGACATTTGAAT---------------------------------TTCTCTGCTGAATTCA----------------------ACCCGTCTCTAAG-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256767  48 +   484378 ----------------------------------------------------------tttttgaagtttcttaGA---------------------------------ATTTCCTTTGTTTCTGT---------------------GCCCGGTTCCACA-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389286  41 -  4147112 -----------------------------------------------------------------AGTTTCAGACT---------------------------------ATTCCATTTGGTTTCGT---------------------GGCGGTTTTTGAG-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   526416 464 +   720316 I
e cb4.chrX              17446483  35 - 21540570 I

a score=43961.000000
s ce10.chrX              2695383 151 + 17718866 T--TTAGCATTGATGTCAGAATACTGATAACTGTGAAGAGCATGTCATGCAC----------------------ACCTCGGTGTCATATGGTGTCGTGAAAACTTAG-TGCTATTGAGTAACAAGGTGATTGATAAGAATAAACAGTACTTCAGTTTGAAAACAGA------AATTTGATAG
s cb4.chrX              17446518 158 - 21540570 T--TTCCTATTGATGACAGTTAACTGATAA---------GCATGTCATGCACACTTATACACTT--TTCACCAAAAATCGGTGTCATATGGTGTCATGGATATTTTCTTGTTATTGGGTAACAAAG----TGATAAGAGCTAGTA-CGGtttggtttaaaaataaa------cactggaaag
i cb4.chrX              I 35 I 847
s caeRem4.Crem_Contig15   230602 167 -  1794024 T--AAAACATTGATGTCAAATTGCTGATAACAGGAAAG-TTTTGTCATGCACATATACACTCTTTCTCTAACATAGGTTGGTGTCATATGGTGCcttgaatattttc-tgttattgTAT-GCAATG----TGATAAGATCTAATAGAAGTTTAGTTTTAAAACAGG------AGTTTGATAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    256815 156 +   484378 T--ATAGCATTGATGTGAG----CTGATAACAGAACAGTATATGTCATACAC------CGCCTCTCTCTAACATACATCGGTGTCATATGGTGCCTTGAATAGTCTC-TGTTATTG--TAACATCG----TGATAAGAACATATAGAACATCAGATTCAAAACATA-------ACTTGACAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389327 170 -  4147112 TCAATGAAATTGATGTCAGTCCACTGATAACTGAAAAGTATATGTCATGCACATAC-TTTTCTTTCTCTAACCCACTTCGGTGTCATATGGTGCCTTGAATAGTCTC-TGTTATTGTATAACAATG----TGATAAGAACGACGAGAAC------TTCAAAACATATATCTATATTTGAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   526416 464 +   720316 I

a score=-1793.000000
s ce10.chrX              2695534 12 + 17718866 CAATCAATTTTC-
s caeRem4.Crem_Contig15   230769 13 -  1794024 CTGTAACTTTTGA
i caeRem4.Crem_Contig15 C 0 I 238
s caeSp111.Scaffold582    256971  1 +   484378 C------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3389497 12 -  4147112 CAGTAAATTGTC-
i caePb3.Scfld02_0      C 0 I 911
e caeJap4.Scaffold18213   526416 464 +   720316 I
e cb4.chrX              17446676 847 - 21540570 I

a score=0.000000
s ce10.chrX              2695546 32 + 17718866 CGGGCATTTGTTTATTCAAACTTGTGACTAGC
e caePb3.Scfld02_0       3389509 911 -  4147112 I
e caeJap4.Scaffold18213   526416 464 +   720316 I
e cb4.chrX              17446676 847 - 21540570 I
e caeSp111.Scaffold582    256972  0 +   484378 C
e caeRem4.Crem_Contig15   230782 238 -  1794024 I

a score=-2178.000000
s ce10.chrX              2695578 212 + 17718866 AAAACATTGAACATAGTGAGTTCAACTCACCATGGGTTTTCAAATTAACTCGGCATTTGGAGcatgggtgtg--cggcaaatatgccaaatttgcccagcacagcaaaactcgaaaatgcagatttgccgaatttgccgagattggcaaattttgaaatttacacatcaGTAGGAATGTTTTTCAGAAAATGGGTTTTTAAAAAATTTATTTAG
s caeSp111.Scaffold582    256972  94 +   484378 -----------------------------CtaaaagtttcgaaactcACGCG-TATATTGAATGTTGTTATgatcggaaaaaa-----------------acaacaa-------------------------------------------ttttga----------------------tgtttcaaaacaaaagattttaaaaaat--------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3389509 911 -  4147112 I
e caeJap4.Scaffold18213   526416 464 +   720316 I
e cb4.chrX              17446676 847 - 21540570 I
e caeRem4.Crem_Contig15   230782 238 -  1794024 I

a score=-12445.000000
s ce10.chrX              2695790 248 + 17718866 GTACCTTAACTTCAAAATACCCGTT----TATAAGGTTCAATTAATTTTCTAATATGAAAGTTTATGAGTTTCAAAATCTGCATGCAACCGTTGTAGAACATTATCATGCAAAA----ATTTAGTCAGGGGTCAAGCTTGATAAACAATATTTATTTT------------CAGTTTCTTATGACGTCatatatatatatattaaacatattttattatCTCGTACGGAAAACTCGCATTTCGTCGAAAATTTCCCTTTTGTGAAAAAC
s caeRem4.Crem_Contig15   231020 230 -  1794024 atTCTTGTGTTTCCAAATAACCATCTTCTGATAAGATACAATTGAACCTTAAGTATCCAAACCCATGACACTGGAcacc-----aaaaaagttgt--gatcaTAGCTGATAAAAAGACACTGcatatttcatcatttttgagcACTAAAATGCATACCTTATCATATGATCAGAAATGTATTTTGTC-CATATTTGTATCTCAACTatgttc------------cgaaaaa--------------aaaa----ccaattgatAAAAAC
i caeRem4.Crem_Contig15 I 238 C 0
s caeSp111.Scaffold582    257066 126 +   484378 -----------------------------gagaataaaaaatttcatcatttttgt----------------------------agGAAAAGCGT--ATTCTTATCTAATATA-----GCCGCGAAATAcatcttttc---------aaattcactCC------------CAG----------------GCTTCCATACCATAAACACGTTT-----------------------------------GA----CCTTGtgataaga--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3389509 911 -  4147112 I
e caeJap4.Scaffold18213   526416 464 +   720316 I
e cb4.chrX              17446676 847 - 21540570 I

a score=-3648.000000
s ce10.chrX              2696038 5 + 17718866 TATTA---
s cb4.chrX              17447523 5 - 21540570 ---TATTa
i cb4.chrX              I 847 C 0
s caeRem4.Crem_Contig15   231250 4 -  1794024 ----ACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257192 5 +   484378 --aaaca-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3389509 911 -  4147112 I
e caeJap4.Scaffold18213   526416 464 +   720316 I

a score=570.000000
s ce10.chrX              2696043 13 + 17718866 AAGTTTTTAGAGC
s cb4.chrX              17447528  9 - 21540570 ---a-ttcagtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   231254 10 -  1794024 ---ACTTCAGAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257197 11 +   484378 --aattacaGAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390420 13 -  4147112 aaattttcaggaa
i caePb3.Scfld02_0      I 911 C 0
e caeJap4.Scaffold18213   526416 464 +   720316 I

a score=57561.000000
s ce10.chrX              2696056 80 + 17718866 AAAATGCACGGATACTTCAAACACAGTTTGTGGATGGTGTGGAAACAAACCAAACTTGGACAAAATTTCTGATGAGTATG
s cb4.chrX              17447537 80 - 21540570 aaaatgtTCGGCGTTTTCCAACACCATTTGCGGCTGGTGCGGAAAGAAGCCCAACCTGGATGAGATCTCGGACAGGTATG
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   231264 80 -  1794024 GAAATGCTCGAAAACTTCAAACACTGTTTGCGGATGGTGCGGAAAGAAACCAAACTTGGATAACCTCTCACATGAGTAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257208 77 +   484378 AAAATGCTCAGCAACCTTCAATACAGTCTGCGGATGGTGTGGTAAGAAACCAAATTTGGATGAGATTTCGGATGAGT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390433 77 -  4147112 atcatGCTCAATCGACTCCAACACGGTTTGCGGATGGTGCGGAAAGAAACCAAACTTGGACGAGATCTCAGACGAGt---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   526880 80 +   720316 AAAATGTTCGGAGAATTCAAACACGGTTTGCGGATGGTGCGGAAGAGAACCAAACTTTTCAGAGATTTCTGATACGTAAG
i caeJap4.Scaffold18213 I 464 C 0

a score=-10076.000000
s ce10.chrX              2696136 26 + 17718866 TCA--TAAAATGAGGCTGATTCTATTAC----
s caeRem4.Crem_Contig15   231344 24 -  1794024 TTATCGATCGTTTGGATGAATGTC--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257285 23 +   484378 -----AAGGGATTCTGATACTGGATGAT----
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3390510 22 -  4147112 -----tagaataagaaaaactttaC-AG----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   526960 28 +   720316 ----CTAAAAATGAAACAACTCTCTGATCTGC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17447617 22 - 21540570 I

a score=41048.000000
s ce10.chrX              2696162 146 + 17718866 AAAGTTAGC----CCATGTTTCAGAGTGCTTGTCTCTTACCAAACCAAGTGTCTTATGTCTAGCCTAGATTTCATCGGGATGACCAAACTGAAAGACGAGCTTGTCAATGTTTTTGATGATGAAAAGGATAGT--GAGGAGGTAG-----AAGAGTT
s cb4.chrX              17447639 147 - 21540570 AAAAATACC----ACCAATTCCAGTGTTCTCGCCTCGTACCAAACCAAATGTCTCATGTCAAATCTGGACTTTGTTGGTATGACACCATTCCTTGATGAGCGTTTCAACTACGTCGTCGATGGAA----GAGA--GGAGAGCCAGGAATCCGGGGAT
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   231368 143 -  1794024 AAAGATCCC----A-AATTTACAGAATTCTTGCCTCTTATCAAACCAAATGTCTTATGTCTAGCTTGGAGTTCATCGGAATGACCAAACTCAAGGACGAAATGATCAACGTCTTCAATGATGACAC--TGAGA--AATTTTCCAG-----CAGAGAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257309 144 +   484378 ACGGAGTATATGAAACATTTACAGAGTCATGGCCTCCTATCAAACAAAATGTCTCATGTCAAGCTTGGACTTCATTGGAATGACTAAACTGAAGGATGATATCATGTCTAAATTTGAAGACGAACC--TCAAT--TGAAAGTTAA---------GAT
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3390533 140 -  4147112 AAGGAGAAT----GATGTTTTCAGAGTCATGGCCTCTTACCAAACCAAATGCCTTATGTCGAGTCTCGGATTCATTGGAATGACCAAACTGAAGGACGAATACATCAATGGATATGATCCTGAACC--AAAGT--TGAAGGTCAA---------GAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   526988 135 +   720316 --GTATTTT----GACCTTTTCAGAGTTTTGGCATCTTATCAAACAAAATGCATGATGTCCCGTTTGGAATTTGTTGATATGAAGAAACTGAAAGAAGAGTT---------ACAAGAAGAGGAACA--agagtccgcagagtccg-----cagagtc
i caeJap4.Scaffold18213 C 0 I 28

a score=-1660.000000
s ce10.chrX              2696308 10 + 17718866 ACCAATTAAA
s cb4.chrX              17447786 10 - 21540570 ACCAGCGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   231511 10 -  1794024 ACCATCATTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257453 10 +   484378 CACATCTCGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390673  6 -  4147112 C----CTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   527123 28 +   720316 I

a score=-7937.000000
s ce10.chrX              2696318 16 + 17718866 GATAATTTCATCAAAG
s cb4.chrX              17447796 16 - 21540570 GTCAAGAGCATGAGAG
i cb4.chrX              C 0 I 639
s caeRem4.Crem_Contig15   231521  3 -  1794024 ATG-------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    257463  1 +   484378 A---------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390679  1 -  4147112 A---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   527151 16 +   720316 GAAAACTTCAATAAAG
i caeJap4.Scaffold18213 I 28 C 0

a score=1739.000000
s ce10.chrX              2696334 142 + 17718866 GTGAAAATCT---------TGAGATGATTGATTCAAATGAGATCAACTACGATATGGCGAGAAACAGTTTAGAAGATGT---GTACGATAGTCAAGAGCACCAGCTAC------------------------------------------CAGACCCGACTTATGAAGAAGGAGATGATTCAAGTTCTTCGGAAGA
s caeRem4.Crem_Contig15   231524 142 -  1794024 GAGAAAACTT---------GGAAGTCATTGATGCTGAGGAGGATCGTTTCAAAATAGCCAAGGAAAGCTTGAACGGTTT---TGAAGACAGCGAGGAACAAGAACTTC------------------------------------------CGGATCCAACTTATGAGGAAGGAAAAGACTCGGActctgctgaaaa
i caeRem4.Crem_Contig15 C 0 I 378
s caeSp111.Scaffold582    257464 139 +   484378 ---AAGGTTCCAGTGATGGAGAAGGAAACGGT------CAGGATAACTTCAAAATTGCCAAAGACGCATTGTTCAATCT---CGACGATAGTGTAGAGCAAGAGCTTC------------------------------------------CAGATCCGACTTTGGAGGAAGGAAGAGAGTC---ATCAGAAGAATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390680 140 -  4147112 ---AACAATC--GTCACAAGGAAGTTCGCACT------GGTGATAACTTCCAAATGGCTAAAGATGCCCTTTTCAACTTGGATGACGACAGCCAGGAGCAAGAATTGC------------------------------------------CAGACCCAACTTTGGAGGAAGGAAAGGAATT---CAacgttgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   527167 178 +   720316 ------------GCCACATTGAGGAAATCAGG-CCAAGAATGGACAGTGAAGAATGG--AGAGATTACATCCGGGACCA---GGAAGATAGTGATGAAGTCGAACCTCTTTTAAGAAGCGATGAAATTAAATCTCAATCCCAGCCTGATTCAGATTCAGATTCTGATTCTGACTCGGATTCTACTTCTACCGAAGA
i caeJap4.Scaffold18213 C 0 I 3
e cb4.chrX              17447812 639 - 21540570 I

a score=-3130.000000
s ce10.chrX              2696476  91 + 17718866 AATTGG---------CGAAGAGGAGAAGACT-----------GATGAAAATGAGATTGGAAGCGAAATTGTTTCGGAAAAAGTCAAAGCTTACATGATT--GAAAAAAGTGAA
s caeSp111.Scaffold582    257603  82 +   484378 CGTAGA---------TGGAGA------GTCT-----GATCatgatgaaaataatatcAGA---GAAATGATTGAGGACGAGA--------GTCGATATgtagatgaaaatgaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3390820 106 -  4147112 agttgatctCACCTCTGGAGAAGAGTTGTCTGCggaggaaatgaaagaagcgATTTCTGG---AGAAAGATCTGGGAAAGAA--GAATCTGCCGAGATT--GAAGAGGATAAA
i caePb3.Scfld02_0      C 0 I 178
s caeJap4.Scaffold18213   527348  94 +   720316 AAAAAG---------CGGTGAAGAGCTGAAT-----GACGAAGATGACGACGGTATCGAT---AAATCGGTTTCCGACCAAGTTCATGCTTATCTCATT--CAAAAAAGCGAG
i caeJap4.Scaffold18213 I 3 C 0
e cb4.chrX              17447812 639 - 21540570 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-869.000000
s ce10.chrX              2696567 6 + 17718866 AAAGTT
s caeSp111.Scaffold582    257685 5 +   484378 gatgg-
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   527442 6 +   720316 ACAGTT
i caeJap4.Scaffold18213 C 0 I 186
e caePb3.Scfld02_0       3390926 178 -  4147112 I
e cb4.chrX              17447812 639 - 21540570 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-80.000000
s ce10.chrX              2696573 123 + 17718866 CCGTCTTCTGTTAAAATTGCGAAAGGA----------AAAACTACAATTGTTTCTCATGAGGTAGGTGGAAAACAACAAAACAATAAAGTTAGCATATTTAAATTgtgctatgcactgcggatctg--gaagtca
s caeSp111.Scaffold582    257690 119 +   484378 --aTATGtggatgaaaatgagaatggaTACGTGGATGAGAATGAAAGTGGTT-----------ATGTGGATGAGAACGAGAT--Tagagat-gaagatgaaaacgACACTGAGGATGACAAGTCTGTGGAAGTCA
i caeSp111.Scaffold582  C 0 I 115
e caePb3.Scfld02_0       3390926 178 -  4147112 I
e caeJap4.Scaffold18213   527448 186 +   720316 I
e cb4.chrX              17447812 639 - 21540570 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=0.000000
s ce10.chrX              2696696 119 + 17718866 ggaacactgcctggtagtgctctcactgggatataagggtgaggccggacttgaactcgtggcctccagattgctagcgaccaccactaccaactgagctatcCCGCTTCTGAAATATG
e caePb3.Scfld02_0       3390926 178 -  4147112 I
e caeJap4.Scaffold18213   527448 186 +   720316 I
e cb4.chrX              17447812 639 - 21540570 I
e caeSp111.Scaffold582    257809 115 +   484378 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-5868.000000
s ce10.chrX              2696815 359 + 17718866 TCGGAGCAAATCATTGAAataagaaattgaaaagttttgtatactcaaaaaaattttgaag--actttttgacgacccaattttcttgaactaacttttttctttttgtttttgttgattttctaagtgtttaatttaagcaaaattcgcacacaaTTGAGaagatgccagaaaaagtggctccgagttaaaaccgttggggtggttaaacatttttgaaactgccgtcaTAAATTCCCTCACTTTTAGTATCATCTATAATCTACAAAAAAATTATTGTGTGAAGCTAACTTTTTGATGTAAACTTGGGATATCTCGCTCTTATGTTTTGAAATTGACCATGAAAATTGAGTGCCCAATT
s caeSp111.Scaffold582    257924 129 +   484378 TCGGGTCAGAGCATT------------------------TTTGATCAGGAAGAT---GAAGCAACAGGGTGATGAACCAAT--------------------------------------------------------------------------------------------GGAGTGG----GAGATGAATCCGTT----------------CTTGAAA---------------------------------------------AGAGCTACTATTGTTT---------CTCTTAAGGTATGCT-------------------GTTTT---ATCGAC----AACAT-------------
i caeSp111.Scaffold582  I 115 C 0
e caePb3.Scfld02_0       3390926 178 -  4147112 I
e caeJap4.Scaffold18213   527448 186 +   720316 I
e cb4.chrX              17447812 639 - 21540570 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-818.000000
s ce10.chrX              2697174 104 + 17718866 TTTAAATTTTCAGAACTAA----ATTCA--TCATTTTAA-TTTCAGGAAGCCGAGGCCACATTCCGAGAGATTGAAGCCCTACCAAACCCTG-T------GCGCAAAATCA------ACCAAGA
s caeSp111.Scaffold582    258053  97 +   484378 -----------------------ATTGACTTTATTATACTTTTCAGGAAGTCCAAGACCAATTC---GAGAACTTCCTTCCACCAGTTCCCA-TCGTCAAGAGCAAGAATATTATGTGGAAGGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3391104 120 -  4147112 TTTAACTTTTTGtaactgaagaaatgtatTTCAACTTGATTTTCAGGATGTCGAGAACAAATTT---AATAACTATGCCCC-TAAGCTCCCAGTTGTTCAACGCAAAGACAGAAAGAAGTATGA
i caePb3.Scfld02_0      I 178 C 0
e caeJap4.Scaffold18213   527448 186 +   720316 I
e cb4.chrX              17447812 639 - 21540570 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-769.000000
s ce10.chrX              2697278 7 + 17718866 CGATTAT
s cb4.chrX              17448451 7 - 21540570 CGACTTG
i cb4.chrX              I 639 C 0
s caeSp111.Scaffold582    258150 7 +   484378 CTCATCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3391224 7 -  4147112 TTCATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   527448 186 +   720316 I
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=-174.000000
s ce10.chrX              2697285 2 + 17718866 GA
s cb4.chrX              17448458 2 - 21540570 GA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    258157 2 +   484378 GA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3391231 1 -  4147112 G-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   527634 2 +   720316 GA
i caeJap4.Scaffold18213 I 186 C 0
e caeRem4.Crem_Contig15   231666 378 -  1794024 I

a score=36019.000000
s ce10.chrX              2697287 81 + 17718866 CTCCTCTGAAGAGTCAAACGAGCGTGAAATCAAGTGG------GACAATTGGGTTGATGATCAAGTGAAACCAATCAGAAC-GGTATG-
s cb4.chrX              17448460 87 - 21540570 ATCTGCTGAAGACTCGAATGACCGCCTGATCGAATGGAAGGATGAGAATTGGCTCGATGATTCTATCAAGCGTATTCCAGA-TGTAAG-
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig15   232044 81 -  1794024 CTCATCGGAAGAATCAAATGAACGTGAAATCAAATGG------GACAATTGGGTTGATGATGAAGTTAAAATACTTGGAAA-GGTATA-
i caeRem4.Crem_Contig15 I 378 C 0
s caeSp111.Scaffold582    258159 81 +   484378 ATCGTCAGACGAATCGGTTGAACGTGAAATCAAATGG------GACAGTTGGGTGGACGATGAGGTCAAACCAATTGGAGA-GGTGGT-
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3391232 74 -  4147112 -----CTGAAGATTCGAACGAACGTGATATCAAATGG------GACAAATGGGTTGATGACAAAGTTAAGCCCATTGATGA---CGAT-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   527636 83 +   720316 CTCGGACGAAGATTCCAATGAAAGATCGATCAAGTGG------GATAAATGGGTCGATGATGAGGTTAAGCCAGTAAAGGACGatgatg
i caeJap4.Scaffold18213 C 0 C 0

a score=-5330.000000
s ce10.chrX              2697368 25 + 17718866 TCTGCAAATCTACCC----GGATTTCTGA
s caeRem4.Crem_Contig15   232125 23 -  1794024 ATTGAGAATATATT------GTTGCGtaa
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    258241 18 +   484378 --TATAA----ATT-----AGTTTCGTCA
i caeSp111.Scaffold582  I 1 I 9
s caePb3.Scfld02_0       3391307 22 -  4147112 --TATGAAAACACT-----AGAATCCTGA
i caePb3.Scfld02_0      I 1 I 16
s caeJap4.Scaffold18213   527719 25 +   720316 --taagaaaaaaatctggaaattttgt--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17448547 20 - 21540570 I

a score=20461.000000
s ce10.chrX              2697393 47 + 17718866 ------AATTT-------TTTTGAAATACAGAACGTCGAAGTTGTCGAAGCC---GAGGAGAT
s cb4.chrX              17448567 47 - 21540570 ------AATCCTGATGAATTT-------CAGAGCGTCGAAATCGTGCAAGCC---GAAGAGAT
i cb4.chrX              I 20 I 283
s caeRem4.Crem_Contig15   232157 39 -  1794024 -------attt-------ttt-------tagaatGTTGAGATTGTTGAAGCC---GAAGAGAT
i caeRem4.Crem_Contig15 I 9 I 15
s caeSp111.Scaffold582    258268 39 +   484378 -------attt-------ttc-------cagagtGTGGAAATCGTTGAAGCT---GAAGAGAT
i caeSp111.Scaffold582  I 9 I 3
s caePb3.Scfld02_0       3391345 43 -  4147112 ------aattt-------ttt-------cagagcatgGAAATCATTGAAGCCGAGGAAGAGCT
i caePb3.Scfld02_0      I 16 I 3
s caeJap4.Scaffold18213   527744 49 +   720316 agttttaattt-------ttttcc----caggAAACTGAATTTGTGAGAGCC---GAAGAAAT
i caeJap4.Scaffold18213 C 0 C 0

a score=-8945.000000
s ce10.chrX              2697440 59 + 17718866 TGAGGAATTTGACCAGCTCATCGCGTAAGTCAATGTTTCAATGATTTTTATTTG--------AGAAA-
s caeRem4.Crem_Contig15   232211 55 -  1794024 TGAGAAGTACGA---------TGCCTATGAGAAGAAGCCAATG---TACGTTTGGGTATTATAAGAG-
i caeRem4.Crem_Contig15 I 15 C 0
s caeSp111.Scaffold582    258310 35 +   484378 CCAGAAATATGA---------AGCCTACGAGAAGATTAC-----------------------GTGAG-
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3391391 41 -  4147112 CCAGGAATATGT---------GGTTTACGAGAGCATTCCAAAG---TA--------------AGGGG-
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   527793 54 +   720316 CAACGAAAACGA-----------TAGAATTGAAAAAGTCAGAG---TCTATGCTGTGGATTTGAGAGA
i caeJap4.Scaffold18213 C 0 I 213
e cb4.chrX              17448614 283 - 21540570 I

a score=-29402.000000
s ce10.chrX              2697499 191 + 17718866 T---TT--CCATTTTTCAGAAAGTCG----------------CTCAAAAATAG-------AAGAAAGATCTTGAATGATGAGACAGAAAGCTCACCACTATTCATTAAAAACTTGGGTTCAGTCTTTGTCATCTGTATGGGAA------TGATCATTGTTGTGTAAGTAAGCT------------------AGA---------------------Tcacgtggat--tcagaatgtcat-atttcgatttgatcttcaaaaaatgcg--
s caeRem4.Crem_Contig15   232266 216 -  1794024 TATATTGGGCAGTTAACGGGAACTAGGGAAACTTTGAGTCGTTCGAAAAATACTTTGAGATTGtaaaatttc----------tcagaaaaaaaact--caatttcgagCCAacattatatatatatatatatatattccgCCAATCTTGAGTTTTAGGTTTTGTATACAAAGTAtgacat-----------aat---------------------ttttttaaatctgttttatcccat-atttcaaaa--------aaaatctttgca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    258345  96 +   484378 T---TTGATTATT----gcgaaatca----------------atgaaaaacag------------cCAGTTT----------ACAG-------------------GAGAAA-----------------------CTTCAGAGA------------------AGATGACCAA--------------------AAC---------------------Ccgttgaaat---------------atttcaata--------aGAAAGTT----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3391432 192 -  4147112 T---TTGCCCAGT-------AATTTG----------------TCGAAAAACAC------------AAAGTTT----------ACAGGAAACTGACT---------GAGAAAGCTGAACAGGAATTGGTTCATGTCTTCGGAGAG----------AAAGCCGAGCAGGCCAACTTCAACAACGAAATCAAGGAACTCAGTCCActcttcttcgtttccttGGGAATGATCATCATTGCGTGAGTTCAGAT--------AGAAAATGTG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I

a score=640.000000
s ce10.chrX              2697690 4 + 17718866 ggag
s caeRem4.Crem_Contig15   232482 4 -  1794024 GGAA
i caeRem4.Crem_Contig15 C 0 I 138
s caeSp111.Scaffold582    258441 4 +   484378 AGAA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3391624 0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I

a score=331.000000
s ce10.chrX              2697694 21 + 17718866 ttgagacgcagacatct-catc
s caeSp111.Scaffold582    258445 20 +   484378 TCAA--CGAAGACACCTACATC
i caeSp111.Scaffold582  C 0 I 51
e caePb3.Scfld02_0       3391624  0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I
e caeRem4.Crem_Contig15   232486 138 -  1794024 I

a score=0.000000
s ce10.chrX              2697715 70 + 17718866 tgatttcgcatggtgctaacgtctcaatttttctggaaaaaaacttcccgcctttttttgtagatcaaac
e caePb3.Scfld02_0       3391624  0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I
e caeSp111.Scaffold582    258465 51 +   484378 I
e caeRem4.Crem_Contig15   232486 138 -  1794024 I

a score=91.000000
s ce10.chrX              2697785 1 + 17718866 t
s caeSp111.Scaffold582    258516 1 +   484378 T
i caeSp111.Scaffold582  I 51 C 0
e caePb3.Scfld02_0       3391624 0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I
e caeRem4.Crem_Contig15   232486 138 -  1794024 I

a score=-365.000000
s ce10.chrX              2697786 9 + 17718866 ataaATCAA
s caeRem4.Crem_Contig15   232624 9 -  1794024 ATTTGTCAT
i caeRem4.Crem_Contig15 I 138 C 0
s caeSp111.Scaffold582    258517 6 +   484378 ATAAGT---
i caeSp111.Scaffold582  C 0 I 1
e caePb3.Scfld02_0       3391624 0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I

a score=-7468.000000
s ce10.chrX              2697795 45 + 17718866 CACGTCTCAGATTCTAACTTTTGAACTGTAAAATCTATGGTTTGT---------
s caeRem4.Crem_Contig15   232633 48 -  1794024 TATGTCGTACGTTC------TTAAACTGAGAAAGTGCGGTTCTGGataatttgt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    258524 18 +   484378 -----------------------------------CCAGTTTCTGAACGTTCA-
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3391624 18 -  4147112 -----------------------------------TATGTTTCATTGAATCTA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   527847 213 +   720316 I
e cb4.chrX              17448614 283 - 21540570 I

a score=118.000000
s ce10.chrX              2697840 2 + 17718866 TT
s cb4.chrX              17448897 2 - 21540570 TT
i cb4.chrX              I 283 C 0
s caeRem4.Crem_Contig15   232681 2 -  1794024 ta
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3391642 0 -  4147112 C
e caeJap4.Scaffold18213   527847 213 +   720316 I
e caeSp111.Scaffold582    258542 0 +   484378 C

a score=343586.000000
s ce10.chrX              2697842 1563 + 17718866  
s cb4.chrX              17448899 1486 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   232683 1520 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 36
s caeSp111.Scaffold582    258542 1523 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3391642 1485 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   528060 1684 +   720316  
i caeJap4.Scaffold18213 I 213 C 0

a score=-9430.000000
s ce10.chrX              2699405 42 + 17718866 -AAAA--TAGGATTTATTACAGCGCTATTCTATGTACTATGATCT--------
s cb4.chrX              17450385 38 - 21540570 -aaaa--aaaaggtgaagGT----TAGTTGCaggttttggatttt--------
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold582    260065 37 +   484378 -aaattcccTCTATAATAAT----TTGTGG---ATGTTAGTCTTT--------
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3393127 38 -  4147112 -TAAG--AATGATTGATTAT----TCATGgtatttattattattc--------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   529744 47 +   720316 aaaaa--aatcatggaTTTT----ACAGCgtactcaaaaaaattttaaaagca
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   234203 36 -  1794024 I

a score=47461.000000
s ce10.chrX              2699447 61 + 17718866 TACTTACTTTGCTTTTGTTTTCGGCTCATTGTAGTCTGGGTGATCTTTCACGCCTGAAATT
s cb4.chrX              17450434 61 - 21540570 GACTCACTTGGCTTTGGATTTCGGCTCATTGTAGTCTGGATGATCCTTAcctcctgaaaat
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig15   234239 61 -  1794024 AACTTACTTGGCTTTTGATTTTGGCTCCTTGTAGTCGGCATGGTCCTTTGTCCCTAAAAGT
i caeRem4.Crem_Contig15 I 36 C 0
s caeSp111.Scaffold582    260104 61 +   484378 ATCTTACGTTGCTTTAGATTTCGGCTCATTGTAGTCGCTAGTGTCCTTTCCTcctaaaaat
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3393167 61 -  4147112 atCTTACGTCGCCTTAGATTTTGTCTCACTGTAGTCAGAATGGTCCTTTCCACCTAAAATC
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   529791 61 +   720316 tcCTTACTTTGCTTTGGACTTTGGCTCACTGTAGTCTGGATGATCTTTGACAcctgaaatt
i caeJap4.Scaffold18213 C 0 I 33

a score=-303.000000
s ce10.chrX              2699508 1 + 17718866 T
s cb4.chrX              17450495 1 - 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   234300 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    260165 1 +   484378 t
i caeSp111.Scaffold582  C 0 I 30
s caePb3.Scfld02_0       3393228 1 -  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   529852 33 +   720316 I

a score=50.000000
s ce10.chrX              2699509 4 + 17718866 TATT
s cb4.chrX              17450496 4 - 21540570 gatt
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15   234301 4 -  1794024 ACTT
i caeRem4.Crem_Contig15 C 0 I 6
s caePb3.Scfld02_0       3393229 4 -  4147112 AATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   529852 33 +   720316 I
e caeSp111.Scaffold582    260166 30 +   484378 I

a score=38.000000
s ce10.chrX              2699513 1 + 17718866 G
s caeRem4.Crem_Contig15   234311 1 -  1794024 G
i caeRem4.Crem_Contig15 I 6 I 21
s caePb3.Scfld02_0       3393233 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   529852 33 +   720316 I
e cb4.chrX              17450500 29 - 21540570 I
e caeSp111.Scaffold582    260166 30 +   484378 I

a score=182.000000
s ce10.chrX              2699514 2 + 17718866 AT
s caePb3.Scfld02_0       3393234 2 -  4147112 AT
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold18213   529852 33 +   720316 I
e cb4.chrX              17450500 29 - 21540570 I
e caeSp111.Scaffold582    260166 30 +   484378 I
e caeRem4.Crem_Contig15   234312 21 -  1794024 I

a score=0.000000
s ce10.chrX              2699516 914 + 17718866  
e caePb3.Scfld02_0       3393236  21 -  4147112 I
e caeJap4.Scaffold18213   529852  33 +   720316 I
e cb4.chrX              17450500  29 - 21540570 I
e caeSp111.Scaffold582    260166  30 +   484378 I
e caeRem4.Crem_Contig15   234312  21 -  1794024 I

a score=555.000000
s ce10.chrX              2700430 6 + 17718866 ATTTTC
s caePb3.Scfld02_0       3393257 6 -  4147112 ATTTTC
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold18213   529852 33 +   720316 I
e cb4.chrX              17450500 29 - 21540570 I
e caeSp111.Scaffold582    260166 30 +   484378 I
e caeRem4.Crem_Contig15   234312 21 -  1794024 I

a score=91.000000
s ce10.chrX              2700436 1 + 17718866 A
s caeSp111.Scaffold582    260196 1 +   484378 A
i caeSp111.Scaffold582  I 30 C 0
e caePb3.Scfld02_0       3393263 0 -  4147112 C
e caeJap4.Scaffold18213   529852 33 +   720316 I
e cb4.chrX              17450500 29 - 21540570 I
e caeRem4.Crem_Contig15   234312 21 -  1794024 I

a score=1336.000000
s ce10.chrX              2700437 2 + 17718866 AA
s caeRem4.Crem_Contig15   234333 2 -  1794024 AA
i caeRem4.Crem_Contig15 I 21 C 0
s caeSp111.Scaffold582    260197 2 +   484378 AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3393263 1 -  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   529885 2 +   720316 AA
i caeJap4.Scaffold18213 I 33 C 0
e cb4.chrX              17450500 29 - 21540570 I

a score=420057.000000
s ce10.chrX              2700439 706 + 17718866  
s cb4.chrX              17450529 652 - 21540570  
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig15   234335 712 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    260199 712 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3393264 716 -  4147112  
i caePb3.Scfld02_0      C 0 I 26
s caeJap4.Scaffold18213   529887 691 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-989.000000
s ce10.chrX              2701145 2 + 17718866 GA-
s cb4.chrX              17451181 2 - 21540570 -AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   235047 2 -  1794024 -aa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    260911 2 +   484378 -AA
i caeSp111.Scaffold582  C 0 I 27
e caePb3.Scfld02_0       3393980 26 -  4147112 I
e caeJap4.Scaffold18213   530578 0 +   720316 C

a score=-2808.000000
s ce10.chrX              2701147  70 + 17718866 GAGCACA-------------------------------------------------------TTATGTTAATTTGTAATGAAGCATCCCAAAAATTGTTCAAAAATTCCAATTTTGGTCACGTTa
s cb4.chrX              17451183 124 - 21540570 TAGAGAAATTATTATTAAAATCCTTTGACATTTTCCTCTGCAccactcaactttgagctcaattatctcgatttttgttgaagatatcaaaaatttgttgattgatg-aaatattggtaatGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   235049  72 -  1794024 tatcagaatatTCAATA--------------TCTCCTCT-----------------------TTATCtcagtttct----aaaaattacaatatccg------------aatttttgtcaaatta
i caeRem4.Crem_Contig15 C 0 I 14
e caePb3.Scfld02_0       3393980  26 -  4147112 I
e caeJap4.Scaffold18213   530578   0 +   720316 C
e caeSp111.Scaffold582    260913  27 +   484378 I

a score=-2126.000000
s ce10.chrX              2701217 339 + 17718866 t---------ttcattggttagggtgcatttaaagcccgaaggtgatcacagtttttgaaatttttagtcacctatcggctttaaataaaccttaa-tcaatgagatagggtgaggtaaacttcctaaatttgtaattaattgataattaaaaaatagataaaagttgggattgctacgacacgggaaagtgaccaaaattaaaaattttacctaaaactagactattttttaacgaaatt---ttgaaccaccaaaaaaaatgtttgagtatgatttgagaagttttattacaaaattcgttcattCCCAAACTGTTGGTCCTTCTTCAAACAAACGTTAT---TCTTTAA---AAA
s cb4.chrX              17451307 265 - 21540570 TGACAAataattcattagttg---------------------------acaaatttcagatatttt--tcacagaaagcgtgataattgacctcaaagtaGATAGTTAGAGTGAG----------TATCTATGAAATACGGTGTTAGTCAAATGAT-GAT---------GATTGTTCGGCCAGTGGACTATCA---------------TTTCCTAAAC---Agccaatttttagctcaattatcttggttc-ttatGAGAAACATTCAAAcat--ttggtgatattatgataaataatttatcaattc-----------------------acAAATATTATATATCTTTGATGGGAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3393980  26 -  4147112 I
e caeJap4.Scaffold18213   530578   0 +   720316 C
e caeSp111.Scaffold582    260913  27 +   484378 I
e caeRem4.Crem_Contig15   235121  14 -  1794024 I

a score=518.000000
s ce10.chrX              2701556 6 + 17718866 CTTAGG
s cb4.chrX              17451572 4 - 21540570 --TTGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3394006 6 -  4147112 ctttga
i caePb3.Scfld02_0      I 26 C 0
e caeJap4.Scaffold18213   530578 0 +   720316 C
e caeSp111.Scaffold582    260913 27 +   484378 I
e caeRem4.Crem_Contig15   235121 14 -  1794024 I

a score=-854.000000
s ce10.chrX              2701562 29 + 17718866 GATTT----GTC--TAACC-------CTGGCATTAATTGTTA
s cb4.chrX              17451576 40 - 21540570 GATATGTGAGTT--TAAACATGACAGTTTGGTTTAgcaggaa
i cb4.chrX              C 0 I 3
s caePb3.Scfld02_0       3394012 33 -  4147112 attct----ggC--TAAAC---CCACTTCGAATTAATTGTCA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   530578 35 +   720316 AATTT----ATTTGTGAAC---AAAACTGGAATCAATTGAAA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    260913 27 +   484378 I
e caeRem4.Crem_Contig15   235121 14 -  1794024 I

a score=-3227.000000
s ce10.chrX              2701591  4 + 17718866 -CTCG-----
s cb4.chrX              17451619  2 - 21540570 ---cg-----
i cb4.chrX              I 3 I 4
s caeSp111.Scaffold582    260940  2 +   484378 ---CT-----
i caeSp111.Scaffold582  I 27 I 2
s caePb3.Scfld02_0       3394047  2 -  4147112 ---CA-----
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold18213   530613 10 +   720316 TTTCATGACT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   235121 14 -  1794024 I

a score=1252703.000000
s ce10.chrX              2701595 1959 + 17718866  
s cb4.chrX              17451625 1996 - 21540570  
i cb4.chrX              I 4 I 42
s caeRem4.Crem_Contig15   235135 1954 -  1794024  
i caeRem4.Crem_Contig15 I 14 I 12
s caeSp111.Scaffold582    260944 1954 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3394051 1999 -  4147112  
i caePb3.Scfld02_0      I 2 I 19
s caeJap4.Scaffold18213   530623 1904 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-2152.000000
s ce10.chrX              2703554 23 + 17718866 tgtgctaaaacaaacaaattttg
s cb4.chrX              17453663 13 - 21540570 TATAAGAGATTAG----------
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   237101 13 -  1794024 TAAATATGAACAA----------
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    262898 23 +   484378 TGAATGAGAACAGATAAAATCTG
i caeSp111.Scaffold582  C 0 I 31
s caeJap4.Scaffold18213   532527 20 +   720316 ---actaaattaaactttttttg
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396050 19 -  4147112 I

a score=-10554.000000
s ce10.chrX              2703577 62 + 17718866 ttatgcactttttatagcagttc---aacatttttaaaatgtgatctacttttggcaaa-----aatcat
s cb4.chrX              17453676 61 - 21540570 ------AAGATACATCACCgttcaataagatatacaaaaacgtat---gtTTCAGTTAACTTTTGGCcat
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   237114 50 -  1794024 ------AAACTTCTCAACCGTTT----CTATTTTCCTAATGTTAT---GTTT--GCTGA-----GAACAA
i caeRem4.Crem_Contig15 C 0 I 38
s caeJap4.Scaffold18213   532547 20 +   720316 -------------------------ttttctttttcacattttgc-------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396050 19 -  4147112 I
e caeSp111.Scaffold582    262921 31 +   484378 I

a score=-10136.000000
s ce10.chrX              2703639 162 + 17718866 caatttgatcact------ttttcgtgtcacaGTGGTC-Atcatttattgcatatttgagttcacttaaagcctataagtggtcaatttttagtcaggtttagaaacctatcggcattaaatttaccttcatcaacgaagtaacccgagataaacaa------------------ccaaaatatgct
s cb4.chrX              17453743 161 - 21540570 cattttcaggacTCTGGAGCTCTGCTGTC-CAGTTTCCGATTTTGGCTTGTGTTTTTga------ttaaaaagtgaaagaagcagatttt---tcaga----------catcggcaaaaagctgaa------aaacttggaattccgaaaaaaaaaatctgtgaatgcaacgTTTCCAATCTAGGCT
i cb4.chrX              I 6 I 61
s caeJap4.Scaffold18213   532567  60 +   720316 --------------------tTCCCTGTC-------------------TGTCTCTTTCCCTTCCATTAAAACATCAAAAT-------------CCACAT---------TATTGGGAATGGT------------------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396050  19 -  4147112 I
e caeSp111.Scaffold582    262921  31 +   484378 I
e caeRem4.Crem_Contig15   237164  38 -  1794024 I

a score=-685.000000
s ce10.chrX              2703801 42 + 17718866 atacaagatgaaaaataacaaattcacttcggaccactgtga
s caeJap4.Scaffold18213   532627 10 +   720316 ATATAAAATG--------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396050 19 -  4147112 I
e cb4.chrX              17453904 61 - 21540570 I
e caeSp111.Scaffold582    262921 31 +   484378 I
e caeRem4.Crem_Contig15   237164 38 -  1794024 I

a score=-6000.000000
s ce10.chrX              2703843  76 + 17718866 cacaaaaaaGGTCAAAA-----TGGAAAAT-------------------------ACTAAACT--------TTAGACCTTCTTTAAATCAATTTCATGTCTCAATT---AACACCAT
s cb4.chrX              17453965 114 - 21540570 catcaaaatggccaaaaacgTCTGAAAACTATGTTTTTGATCATCCGTTACTGTAACTGGATTTTTGGTGCTTGGatgtctttcaa---aatttcattattCATTTCTAAATACTAT
i cb4.chrX              I 61 C 0
s caeJap4.Scaffold18213   532637  21 +   720316 -------------------------------------------------------------------------------CGTTCAA------TTCTTTGCGTGTTT-----------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396050  19 -  4147112 I
e caeSp111.Scaffold582    262921  31 +   484378 I
e caeRem4.Crem_Contig15   237164  38 -  1794024 I

a score=107.000000
s ce10.chrX              2703919 7 + 17718866 GCACTTA
s cb4.chrX              17454079 5 - 21540570 --TCCCA
i cb4.chrX              C 0 I 14
s caePb3.Scfld02_0       3396069 7 -  4147112 GTGTTTA
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18213   532658 5 +   720316 --ACTGA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    262921 31 +   484378 I
e caeRem4.Crem_Contig15   237164 38 -  1794024 I

a score=-6348.000000
s ce10.chrX              2703926 46 + 17718866 TTTCTGTGAGAATGATTGAGTGTCCTATTGACCAATAGA-CGACAGT
s cb4.chrX              17454098 33 - 21540570 tttttgttaaC-------------CTATCGAGCTCCATA-CCACATT
i cb4.chrX              I 14 I 15
s caeSp111.Scaffold582    262952 39 +   484378 TTTGTGTGAATATGATA-------ATATTCCCCTATTTA-CGATCAT
i caeSp111.Scaffold582  I 31 C 0
s caePb3.Scfld02_0       3396076 40 -  4147112 TTCTTGTGAACATTGTT-------CTTTTGCACTCTTTATTAATAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   532663 17 +   720316 ----TAAGAATGAGCTC-------AAAT-------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   237164 38 -  1794024 I

a score=53459.000000
s ce10.chrX              2703972 174 + 17718866 AAAGCATGGGA--AATCTAC--TCTTATCAGTAAGTTTTCGCTCTCAAACCCTTA---G----CGTGTTGCGTAATATTCTATGTGACCCTTCTAC-----AGATTGTCGTGTTTGATTGCGGTCTA-----TGGAGGAAGATGCACCA-TCTTGATAAGTGGGAACGATAAAAGTA-TTAGC-AAATGACCTTTCT-C-----------
s cb4.chrX              17454146 161 - 21540570 AATTTATGGGGACACAGAAC--TCTTATCAG-------------CAAGCCTCATT---GCTG-GGAATTACGCAATATTCCATGTGACCCCTCT-------AGATTATCGCATTTGATTGCGGTCCACCACCACTCGAAAGGTGCATCAACCCTGATGAGAGGGAACGATAAAA------AAC-CGATGCTGTT----------------
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig15   237202 167 -  1794024 AGAGCATGGGA--ACTAAAC--TCTTATCAGTGAG-------GCCTAGCCTCTTTTGGGCAA-TATATTACGTAATATTCCATGTGACCTC----------AGATTATCGCGCTCGATTGCGGTCCG-----GAGAGAAAGATGCACCA--TCTGATGGTGAGGGACGATAAAACTG-TTCGC-AAGTGGTCTTTCCC------------
i caeRem4.Crem_Contig15 I 38 I 134
s caeSp111.Scaffold582    262991 172 +   484378 ATTGCTTGAGA--AACACACGTTCTTATCAGCAAA-------CCTCAACCTTTTA---GATATTATGTTGCGCAATATTCCATGTGGCCCTTCTAC-----AGATTATCGCATTTGATTGCACTCCA-----CATAGAGCGATGCACTA-TTCTGATAG-ATGGAACGATAAAACTG-TTAGCGAAGTGGTTTTGGT-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3396116 169 -  4147112 AATGCTTGTGA--AATGATC--TCTTATCATCAGG-------TCCCAACCTCTTA---GCTATTTAGTTGCGCAATATTCCATGTGACCCTTCTGC-----AGATTATCGCATTTGATTGCGGTCCA-----CAGAGAACGATGCACCA-TCTTGATGA-TTGCAACGATAAAAGTG-TTAGC-AAGTGGTTTTCGC-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   532680 176 +   720316 AACACATGGGA--AATATGA--GGTTATCACCACA---------CCAAACCAGGC---AATA-AGCGTTGCGCAATATTCTGTGTGACCCTTCTCTCCATAAGATTATCGTATTTGATTGTGGTCCGTACAGTATAGAAAGATGTATGA-ATTTGATAA-------------AAGTGTTTAGT-Tcgtggtttttta--aaacttttttt
i caeJap4.Scaffold18213 C 0 C 0

a score=-28874.000000
s ce10.chrX              2704146  60 + 17718866 TTAACCTTC--TCTATGTC----------TCTTCTGA--TTCTTT------------------------------------TGTTGCATAAATGGAACTTGTCAAAAAAA-----
s cb4.chrX              17454307  44 - 21540570 GTGACCTTCT-TC----TC----------TCCTCAGA--TGTTTC-------------------------------------------TAAATTG------TCAAGAACT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   237503  16 -  1794024 ---------------------------------ctaa--tttttc-------------------------------------------ttattt---------------------
i caeRem4.Crem_Contig15 I 134 C 0
s caeSp111.Scaffold582    263163  50 +   484378 -TGACCTCTCTTCTagttt----------ctttcgaa--tttaGT-------------------------------------------TGAAttg----tatcaaaaaaa-----
i caeSp111.Scaffold582  C 0 I 110
s caePb3.Scfld02_0       3396285  65 -  4147112 -TGACCTTTC-TCTAGTTC----------CTCTCGAAATTCTATTGCGTCAAG-------------------------AATTGTTTCATGAATTG----TATCAAG---------
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18213   532856 102 +   720316 ------tttg-tttaattctACAGTATGACTTTCGGA--TACTGAACAAAAAGCGGCCAGATCAAAGTGATTGTATGTACATATCTGTTACATgg----aaacaaggaaaaaaga
i caeJap4.Scaffold18213 C 0 C 0

a score=-19347.000000
s ce10.chrX              2704206 43 + 17718866 AATTCGGCAACTTCAAATAT-------CCTCGTGCTTTGTAGAAAACGTT
s cb4.chrX              17454351 49 - 21540570 -GTTTGCATGTTATCAAGCCCTCGCTGTGTCGGCCACatcaaacaacttt
i cb4.chrX              C 0 I 87
s caeRem4.Crem_Contig15   237519 31 -  1794024 -------------------tctctctgcttcttcttctccaaaatatgtt
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    263323 23 +   484378 ---------------------------AATTTGGTGATGGAAAGTGCGTT
i caeSp111.Scaffold582  I 110 I 14
s caePb3.Scfld02_0       3396365 23 -  4147112 ---------------------------AAACCTGTGGTTGTCACTGCTTT
i caePb3.Scfld02_0      I 15 I 19
s caeJap4.Scaffold18213   532958 45 +   720316 --aaaagaaaaggttAAAGTTTTCCTGTTCCCCCTACTGTACACATT---
i caeJap4.Scaffold18213 C 0 C 0

a score=-5219.000000
s ce10.chrX              2704249 13 + 17718866 --TATGAAATATTTG--
s caeRem4.Crem_Contig15   237562 12 -  1794024 ---ATGGAAAGTGCG--
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    263360  7 +   484378 --------AAGTGAC--
i caeSp111.Scaffold582  I 14 I 17
s caePb3.Scfld02_0       3396407  7 -  4147112 --------Aggttat--
i caePb3.Scfld02_0      I 19 I 28
s caeJap4.Scaffold18213   533003 17 +   720316 TCTTTTGCAAATATCTA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17454400 87 - 21540570 I

a score=-1084.000000
s ce10.chrX              2704262 6 + 17718866 TTGTCC----
s caeRem4.Crem_Contig15   237574 6 -  1794024 TTGATC----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3396442 6 -  4147112 CTCTTC----
i caePb3.Scfld02_0      I 28 I 53
s caeJap4.Scaffold18213   533020 9 +   720316 -TCtttaaat
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17454400 87 - 21540570 I
e caeSp111.Scaffold582    263367 17 +   484378 I

a score=-797.000000
s ce10.chrX              2704268 13 + 17718866 GTGTTATTA-------GAAT
s caeRem4.Crem_Contig15   237580 20 -  1794024 GGAGGACTAAGTGCCTAAAC
i caeRem4.Crem_Contig15 C 0 I 1
s caeJap4.Scaffold18213   533029 20 +   720316 gtattatttttctcaaaaat
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396448 53 -  4147112 I
e cb4.chrX              17454400 87 - 21540570 I
e caeSp111.Scaffold582    263367 17 +   484378 I

a score=-852.000000
s ce10.chrX              2704281 12 + 17718866 CGTATATTTCGG
s cb4.chrX              17454487 12 - 21540570 CGTTGATCTCGC
i cb4.chrX              I 87 I 22
s caeRem4.Crem_Contig15   237601  7 -  1794024 CGATAAT-----
i caeRem4.Crem_Contig15 I 1 I 4
s caeJap4.Scaffold18213   533049 10 +   720316 --atgaTATGGC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3396448 53 -  4147112 I
e caeSp111.Scaffold582    263367 17 +   484378 I

a score=139769.000000
s ce10.chrX              2704293 278 + 17718866 GGCTTTCGTTTCAATTAATCA-CTATAATCAAATCAACGAAAGTCAAT-------CCAATGATCCGTGAAAACTTAACACATGATTTGTAGATTTATAGATTACATAATTATAATTTATATAAAGTTCCTCC----TCG-----TTCTCTTTGCAACACACCT-TTTAATGTTTGAGAACTCTGAGAAAGAAG-----------------GCCAAGGG----AGAATGTTA-GATGGTTATGA--------ATATACACGCGCAT-CTCGTTTTCCCGTTACGCAAACAC-------AACCAC--T------AAGCTT---CCACTAACCGAAAATATGCACCAT
s cb4.chrX              17454521 286 - 21540570 GGTTTCCGTTCCAATTAATCGCTTCTAATCAAATTAGTGGGAGGGGATGTCG--CCAAATGATCCGTGAAATTTTGACACTCAGTAGATAGACT-------GACTAAATCATAATTCC-------TATTTCC----CTGATGGTTCCTCAT---AACATTCTTATATTATGTTTGAGCACTCTGAGAAGGAAGCG---------------GGGGACGG----AGACG-----GAAGGTTATGAAAAT--ATATGTACACGCGCATCCCCGGCCCCCCGTTACGCAAACATGGAACGAAACCTTTGCCTTCCGAAAACCTCCC----------ATAAATGCACCAC
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   237612 295 -  1794024 AGTTTCCGTTCCAATTAATCG-TTATTATCAAATCAGTGGAAGACATTGCAGAATTAAGTGATCCGTGAAATCTTGACAC---ATATATAGAGT-------TAACTCATAATAATT---------TGCTTCCCGGTCTGTCTGTTCCCCATCAAAACATTCCT-TATAGTGTTTGAGCACTCTgagaaggaagcg----------aagaaggaagcgg----agaagAT---GGAGGTTATGA--------ATACACACGCGCAT-CTCGTTTCTCCGTTACGCAAACAT-GAACGAAGCCCT--CTTTTCGAAACTCCTTCCACTAACCGAATATATGCACCAC
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    263384 287 +   484378 GGTTTCCGTTCCAATTAATCG-GTATAATCAAATTAGTGTAGAACAGTGTGGAAACAAGTGATCCGTGAAATCTTGACACATCATATATCGACA--------AACTCATCATAATTTCT----TATTATTCC----CTA--GGTCTCTCATCAAAACATTCTT-TATAGTGTTTGAGCACTCTGagaaggaagcg----------aagaaggaagcgg----agaaggT---GGAGGTTATGA--------ATATACACGCGCAT-CTCGTTTCTCCGTTACGCAAACAT-----GAAACCCT--TCCACCGAAACTC-----ACTAACCGAATATATGCACCAC
i caeSp111.Scaffold582  I 17 C 0
s caePb3.Scfld02_0       3396501 287 -  4147112 GGTTTCCGTTCCAATTAATCG-CTATAATCAAATTAGTGGAGGACAGTGCGGAAACAAGTGATCCGTGAAATCTTGACACATCATATATAGACT--------AACTCATCATAATTCC----------TTCC----CT----GTTTCCCATCAAAACATTCTT-TATAGTGTTTGAGCACTCTGagaaggaagcg----------aagaaggaagcgaagGTAGAAGGTGGAGGAGGTTATGA--------ATATACACGCGCAT-CTCGTTTCTCCGTTACGCAAACAT-GAACGAAACCCC--T---CCGAAACTC-----ACTAACCGAATATATGCACCAC
i caePb3.Scfld02_0      I 53 C 0
s caeJap4.Scaffold18213   533059 289 +   720316 AACCGGCGTTCTAATTAATCG-TTATAATCAAATTAATGGAGGACAGTACAAAACCTGATGATCCGTGAAATCTTGACCCATCATTCACTCATT---------TGTAGTAATAATTTTTCCATCTTTCTCCC----AC----TCTTCTCATCACGAC------------TGTTTGAGCAACcttggaatggaatggaatggagaaaggaaggaaaggg----aagggaa---agAGGTTATGaatatacatacatacatgcGCAT-CTCGTTTCACTGttatgcaaacatttagagaAACCCC--T-----------C-----ACTAACTGAATAAACGCACTAT
i caeJap4.Scaffold18213 C 0 I 42

a score=2468.000000
s ce10.chrX              2704571 41 + 17718866 AACATTTAGGAAAAAGGAACAGACTGTGTCTATAC------------ATATGT
s cb4.chrX              17454807 19 - 21540570 -----------------AACGAAC---------ATACTATCCTT--------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   237907 41 -  1794024 --TATTTA--------GAACAGACTTTGTC-ATACACTATCCTC-CCATATGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    263671 42 +   484378 --TATTTA--------GAACAGACTGTGTC-ACACACTATTCCTTCCATATGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3396788 39 -  4147112 --TATTTA--------GAACAGACTGTGTC-ACAC---ATCCCTCCCATATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   533348 42 +   720316 I

a score=12012.000000
s ce10.chrX              2704612 255 + 17718866 ----CGAGAGAGGGTACTGGTACTTGAAATTGAAACCGTGTATTTAGACG-----------------GAAG--------------AAGCGAAAAAA--------GTGTTTTAAAC-CGGATGCAA---------------CAGTGACCTTACTTG-----TCGCAA---------TTTGATTTGGAGAACA-CTTTTTTTTCGAAAAATTTGAAGCATCTC-T---GCGTGATGAATTAAGAA----TAAAATGATCGATGATATCACT---------GTAGACGAAATGAAACAATAATCAATC-AC--GATTTGTCAAATCGGCATCGGTTTAATATA-------------------ATTTTTCCG
s cb4.chrX              17454826 195 - 21540570 ----CCC-ATAAGGTACTGGTACTTGAAATCGAAACTGTGTGTTTAGATG-----------------AGG---------------AAGGTGAA-----------GCTTTTGAGAC-CGGAT---------------------ATGacctcc---------------------------------------------------aaaaaattcaaagcatCTGAT---GTCTAGAGGA-------------GAATGGATGACCGCACTGAC---------AGTGACGAATTGGGAAAGTGATCAATC-AA--AATGTATCAAA-----AGCAGCATCAGGAG-------------------AATCATCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   237948 247 -  1794024 ----CGA-ATAAGATACTGGTACTTGAAATCGAAACTGTGTGTTTAGCGG-----------------AAAAGCAACAAAACTACTAACGAGAACAA-TACGATGGTTTTTAAGAC-AAACT---------------------GTGACCTTCTACA-----TTTTCG--------CTTTAAAcgtaaaa---------ttattgaaaaatttgaagcatCTT-C---ATCTAAAAGAT----------ATGAATGACCAAACATATTGAC---------AGTGACGAATTGGAAAGATGATCAATC-ACGTAATGTGTCAAA-----AGCGgaatt-------------------------ttcgtctt
i caeRem4.Crem_Contig15 C 0 I 32
s caeSp111.Scaffold582    263713 230 +   484378 ----CGA---AAGGTACTGGTacttgaaattgaaactgtGTGTTTAGTGG-----------------AAAAGCT-----------TTGGTAGACAA--AGAAGGGTTTTTGAAGCGCGGAT---------------------ATGACCTTCTTTA-----TTTCCGGC--ACATCATCAAttcgg-------------tttcaaaatat------cagttt-t---gtctagaaaa------------agaatggcCAACGATAGTGAC---------AATGATGAATTGGAAAGATGATTGATCAACGTAAtgtatcaaa-----aataattcc------------------------atTCCTTTT
i caeSp111.Scaffold582  C 0 I 27
s caePb3.Scfld02_0       3396827 243 -  4147112 ----CGA---AAGGTACTGGTACTTGAAATCGAAACTGTGTGTTTAGAGA-----------------AGAAGC------------TTGTGAGACAA-TGGGATGGTTTTTGGGAC-CGGAT---------------------ATGAccttctttgtcttctttccGGC--ACTTCatcgaaaaagaga---------atttcaaagaattcgaAGCATGGC-T---GTCTAGAAAA------------TGGATGACCGTCGATATTGAC---------AGTGACGAATCGAAAAGATGATTGATC-ACGTAAtgtatcaaa-----aaagaatct------------------------tttcattct
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18213   533390 346 +   720316 AGAGAGA---AAGCTACTTGAGTTTGAAATGGAAACTGTGT-TTTAGTAGTCAATTCGATTGTTCGTGGAAGCTTTCATATTA--AATCTAAAGAGGCACtatgaattttttgac-aaaaacccACACACACATTTTGGTCAATGAACAACAATA-----TCTACTGTTGATTTTGTCAAGTTTCATGagagaaaagtttggaaagaATTTGAAGCGCGGT-TCGATTCTCAAACATGAAGAATCCCATTACTGATTGATGATACTGTCTGTCTCAAAAGTGACGAACAGTTGGAATGATCaatc-aaaaaatgtatcaaa-----aaaaggaaaagaaaagcgTCTCTTATTGGCCATATTTTT---
i caeJap4.Scaffold18213 I 42 C 0

a score=-4664.000000
s ce10.chrX              2704867 20 + 17718866 GACCTCTGGACAAAACCA----------TT
s cb4.chrX              17455021 30 - 21540570 AATCaataaagaaaatgaaaaattactgtt
i cb4.chrX              C 0 I 39
s caeSp111.Scaffold582    263970  2 +   484378 ----------------------------tt
i caeSp111.Scaffold582  I 27 I 14
s caePb3.Scfld02_0       3397105  2 -  4147112 ----------------------------TC
i caePb3.Scfld02_0      I 35 I 14
s caeJap4.Scaffold18213   533736  5 +   720316 -------------------------CCATT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   238195 32 -  1794024 I

a score=231450.000000
s ce10.chrX              2704887 552 + 17718866  
s cb4.chrX              17455090 567 - 21540570  
i cb4.chrX              I 39 I 70
s caeRem4.Crem_Contig15   238227 531 -  1794024  
i caeRem4.Crem_Contig15 I 32 I 1
s caeSp111.Scaffold582    263986 530 +   484378  
i caeSp111.Scaffold582  I 14 I 1
s caePb3.Scfld02_0       3397121 541 -  4147112  
i caePb3.Scfld02_0      I 14 I 1
s caeJap4.Scaffold18213   533741 601 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-255.000000
s ce10.chrX              2705439 52 + 17718866 T-ATGGAGTGGCTATTGAGAA-----------GCGGAATTCC---------------AATC-----AAAGCT-----AAAAATTAGTTG
s caeRem4.Crem_Contig15   238759 72 -  1794024 T-ATGAAGTGGCTATTGAGAAAATACC-CGACGAAAAATTCC----------ATTGGAATATTGTCACCTTC-----AGAAATACAAAA
i caeRem4.Crem_Contig15 I 1 I 34
s caeSp111.Scaffold582    264517 62 +   484378 t-atgaagTGACTATTGAGAAATAC------TGTGAAATTCT----------TCATGAATA-----GGTact-----agaaatttgaat
i caeSp111.Scaffold582  I 1 I 20
s caePb3.Scfld02_0       3397663 61 -  4147112 tcattcagtgGCTATTAAGAAAACccc---atgaaaaattcc---------------aatg-----aaattc-----agaaacttctat
i caePb3.Scfld02_0      I 1 I 34
s caeJap4.Scaffold18213   534342 81 +   720316 T-ATAGAGTGGCTATTGAGAGAACCTCATAAAGCACAAATTCATGTTCCTCATTCTTTATT-----ACCTCCCCGCAAAAAGCTTCT--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17455657 70 - 21540570 I

a score=283136.000000
s ce10.chrX              2705491 272 + 17718866 ACTCACCGGAAATCCAACACGACGAGTTATATCCTGAGCCGAGTTGAGCACATTAACCATGTCGGTAATGTTCTTCTCAAGACAATCGGTGCAAACGAATCGCAGTTGGGAAACTGGAGCCTCGGAAACGCAATAGATTGCCTCTTTAGTTGGTGTTCCGTGCATGGTCCAAACGACTTGGTTAAGCTGCTCGGCATTGGCGACTGGGTAGGGAGCATCAGTGATTTTTACTTGTG---CCATTATTTGTGACATCATTTGAGCTGAAT------TTAGTT
s cb4.chrX              17455727 269 - 21540570 ACTCACCGGAAATCCAACTCGACGGGTGATATCCTGTGCCGAATTGAGCACATTAACCATGTCGGTAATATTCTTCTCCATACAATCGGTGCACACGAATCGGAGCTGGGAGACTGGAGCCTCGGAAACGCAGAAAATCGCTTCCTTAGTAGGTGTTCCGTGCACGGTCCACACGACTTGATTGAGCTGTTCGGCATTGGAAACTGGGTATGGAGCATCGGTAATTTTCACTTGAGCCACCATCACTTGTGACATcatttgagctagaa------------
i cb4.chrX              I 70 C 0
s caeRem4.Crem_Contig15   238865 279 -  1794024 ACTTACCGGAAATCCAACACGACGAGTTATGTCTTGAGCTGAGTTGAGGATATTAACCATGTCGGTTATGTTCTTCTCAAGGCAATCGGTGCAAACGAATCGGAGTTGGGATACTGGTGCTTCGGAAACGCAGTAAATTGCTTCCTTGGTGGGTGTTCCGTGCATGGTCCAAACAACTTGATTGAGCTGTTCGGCATTGGAAACTGGGTATGGGGCATCGGTAATTTTAACTTGAGCGACCATTACTTGTGACATCATTTGAGCTAAAAG--AAATGACCG
i caeRem4.Crem_Contig15 I 34 C 0
s caeSp111.Scaffold582    264599 276 +   484378 ACTAACCGGAAATCCGACACGACGAGTAATATCTTGAGCAGCATTGAGGACATTAACCATGTCCGTTATGTTCTTTTCTAAGCAATCGGTGCAAACAAATCGGAGTTGGGATACTGGAGCCTCGGAAACGCAATAAATTGCTTCCTTAGTTGGTGTTCCGTGCATGGTCCAAACGACTTGATTAAGCTGTTCTGCGTTGGCAACTGGATATGGAGCATCGGTTATTTTGACTTGAGCAACCATTACTTGTGACATCATTTGAGCTGAAAA--AGCT---TT
i caeSp111.Scaffold582  I 20 C 0
s caePb3.Scfld02_0       3397758 279 -  4147112 ACTCACCGGAAATCCAACACGACGGGTAATGTCTTGGGCCGAGTTGAGAACATTAACCATGTCCGTTATATTCTTCTCAAGGCAGTCAGTGCAAACGAATCTAAGCTGGGATACTGGAGCCTCGGAAACGCAATAAATTGCTTCCTTAGTTGGTGTTCCATGCATGGTCCACACAACTTGGTTGAGCTGTTCGGCGTTTGAGACTGGATAGGGAGCATCGGTGATTTTGACTTGAGCAACCATTACTTGTGACATCATTTGAgctaaaaa--caataaatt
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold18213   534423 276 +   720316 ACTTACCGGAAATCCAACCCGACGAGTTATGTCTTGAGCTGAATTGAGCACATTCACCATGTCCGTAATGTTCTTTTCCAGACAATCGGTGCAAACGAATCGGAGCTGTGAAACAGGAGCCTCGGAGACGCAATAGATGGCTTCTTTGGTCGGCGTTCCGTGCATGGTCCAAATGACTTGGTTGAGCTGCTCGGCATTGGCAACCGGATACGGAGCATCGGTGATTTTCACCTGAGCCACCATTGCTTGTGACATCATTTGAGCTAGAAATGAGAt-----
i caeJap4.Scaffold18213 C 0 I 33

a score=-13469.000000
s ce10.chrX              2705763 29 + 17718866 GTTTTACTACAACCTGTCG----------TTT-TAATTAA
s cb4.chrX              17455996 36 - 21540570 ---aacaGAGAATTTGGAACAAtacagttttttcaaat-a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   239144 31 -  1794024 GTTAAGAGAGA---TGGGACAGTAC----TTGATAAAT--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    264875 25 +   484378 CTCATTTGAAGATATTGCT----------TTTACA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3398037 24 -  4147112 aggaactgaaaaacttgga----------atc-tA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   534699 33 +   720316 I

a score=199060.000000
s ce10.chrX              2705792 515 + 17718866  
s cb4.chrX              17456032 584 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   239175 528 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    264900 509 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3398061 518 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   534732 583 +   720316  
i caeJap4.Scaffold18213 I 33 I 408

a score=1000.000000
s ce10.chrX              2706307 1 + 17718866 C
s cb4.chrX              17456616 1 - 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   239703 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    265409 1 +   484378 C
i caeSp111.Scaffold582  C 0 I 382
s caePb3.Scfld02_0       3398579 1 -  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   535315 408 +   720316 I

a score=-1873.000000
s ce10.chrX              2706308  9 + 17718866 ACGAGGCAC-------
s cb4.chrX              17456617 16 - 21540570 AGAAGGATTGGGAGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   239704 11 -  1794024 AGACGGAGT-----AC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3398580  8 -  4147112 -GGAGGAAC-------
i caePb3.Scfld02_0      C 0 I 654
e caeJap4.Scaffold18213   535315 408 +   720316 I
e caeSp111.Scaffold582    265410 382 +   484378 I

a score=-1963.000000
s ce10.chrX              2706317 83 + 17718866 CTCGGCACAAAAGAATAAAAGGTCATTGAGAATTATAATTG---CTCCAGGA-AAG--AAATGAGAACATT-------TTTTGA--AGATGAACAATT
s cb4.chrX              17456633 83 - 21540570 GTCAAATTATGAG----AGTGGTCATGCAAGAGAAAAACTAGG-GACCACAACTGCCAACGTg---atatt-------ttctagaaaaaagaacaact
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   239715 90 -  1794024 GTTAGACCGTGAGGTTCAGAAGTTACTTGATGGTAGAGTTTTACGTCCATAA-TGT--AAGTG---ACATTAGCAAACTTTTGG--GATAGaacaatt
i caeRem4.Crem_Contig15 C 0 I 301
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I
e caeSp111.Scaffold582    265410 382 +   484378 I

a score=399.000000
s ce10.chrX              2706400 46 + 17718866 CATCTATCAAAAAAACTTTTTTttttcaacgtataaactcaaaatg
s cb4.chrX              17456716 35 - 21540570 --------gaaaaa---ttatcttacagccctgaaaactaaaaatg
i cb4.chrX              C 0 I 151
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I
e caeSp111.Scaffold582    265410 382 +   484378 I
e caeRem4.Crem_Contig15   239805 301 -  1794024 I

a score=0.000000
s ce10.chrX              2706446 141 + 17718866 tgctcaaatcaactaatttcgtaatgaaaatcctcaaaaaattcagaaaaatgttttgtcggttcaaagtttcaaaactcaaatccccgatccggcaatttttctgtatcacagtggcccggagttaacggtttctttagt
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I
e cb4.chrX              17456751 151 - 21540570 I
e caeSp111.Scaffold582    265410 382 +   484378 I
e caeRem4.Crem_Contig15   239805 301 -  1794024 I

a score=-2624.000000
s ce10.chrX              2706587 707 + 17718866  
s cb4.chrX              17456902 594 - 21540570  
i cb4.chrX              I 151 C 0
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I
e caeSp111.Scaffold582    265410 382 +   484378 I
e caeRem4.Crem_Contig15   239805 301 -  1794024 I

a score=-264.000000
s ce10.chrX              2707294 13 + 17718866 TAGGATTATCTAA
s cb4.chrX              17457496  7 - 21540570 -----tttttca-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   240106 13 -  1794024 TAAGTTTGTTTAC
i caeRem4.Crem_Contig15 I 301 C 0
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I
e caeSp111.Scaffold582    265410 382 +   484378 I

a score=-410.000000
s ce10.chrX              2707307 24 + 17718866 -TTTGAACAACATTTTTGTTTGCCT
s cb4.chrX              17457503 18 - 21540570 -------aactgtccatgttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   240119 24 -  1794024 CTTAG-CAAACATCGTTGTCCTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    265792 23 +   484378 -TTAGAAGGACATCCTTGTCCTTT-
i caeSp111.Scaffold582  I 382 C 0
e caePb3.Scfld02_0       3398588 654 -  4147112 I
e caeJap4.Scaffold18213   535315 408 +   720316 I

a score=7274.000000
s ce10.chrX              2707331 39 + 17718866 TTTATTTGACCTTAACA---AAAAAGTACAACTACTCGTTAG
s cb4.chrX              17457521 35 - 21540570 --gttatga-ATGACCTCAAAATGAGAAAG--TACTCGTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   240143 40 -  1794024 --TATATGACCTCATCTCTAAAAAAGTAATTCTACTCATTAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    265815 40 +   484378 TTTATATGACCTCATCT--AAAAAAGTACTTCTATTTATTAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3399242 39 -  4147112 TCTGTACGACCTCTACT---AGAAAGTACTTCTACTCATTAG
i caePb3.Scfld02_0      I 654 C 0
e caeJap4.Scaffold18213   535315 408 +   720316 I

a score=259121.000000
s ce10.chrX              2707370 608 + 17718866  
s cb4.chrX              17457556 668 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   240183 624 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    265855 607 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3399281 602 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   535723 672 +   720316  
i caeJap4.Scaffold18213 I 408 I 134

a score=12419.000000
s ce10.chrX              2707978 51 + 17718866 CAacacacacacacacacacacacacaactcacac-aGGTGGAACG---ATGATG
s cb4.chrX              17458224 30 - 21540570 CA----------------------ACAACTCGCGCAAGGTGGAACG---ATGATG
i cb4.chrX              C 0 I 880
s caeRem4.Crem_Contig15   240807 27 -  1794024 CA----------------------ATAACTCAT---AGGTGGAACG---ATGATG
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    266462 27 +   484378 CA----------------------ACAACTCAT---AGGTGGAACG---ATGATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3399883 30 -  4147112 CA----------------------ATAACTCAC---AGGTGGAACGAGAAGAACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   536395 134 +   720316 I

a score=7864.000000
s ce10.chrX              2708029  86 + 17718866 ----------GGAAAGAAAG----AAAAGACCGCAT--TAAAATA-CTAA-----CAAATCTTTTGTGAATAATAAGGGA---ATTGTAAATATTTGCAATGTTGACGTTG
s caeRem4.Crem_Contig15   240841  81 -  1794024 ----------gggaagaaag---aaagagaccGCTTGacaaaaaa-gtcaaa---catATC-TTTATGAATGATCTGATT---GCCGTAAATATT---GACGGTG------
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    266489 101 +   484378 GTAATGTTGTGGAAAAGGACGAAAAAGAAGCCG-----CAAAACG-CTCGAGATGTGTATC-TTTATGAATAATCTGATGTTAGTTGTAAATATT---AGTATTGACGTTG
i caeSp111.Scaffold582  C 0 I 329
s caePb3.Scfld02_0       3399913  99 -  4147112 ATAATGTTATGGGAAGcaagagaaaagaaaccgC----CAAAACGAATACACATTCATATC-TTGATGAATAATCTGATT---GTTGTAAATATT---GAGATTGACATT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   536395 134 +   720316 I
e cb4.chrX              17458254 880 - 21540570 I

a score=-1138.000000
s ce10.chrX              2708115 32 + 17718866 A--TGCTACCATAAAAGAGCAGTTTAAAAAACAA---
s caeRem4.Crem_Contig15   240922 37 -  1794024 AATTGTAAAAGTGTGCATTCTGTTGGAAAATATACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3400012 31 -  4147112 ---TGGTAATATAAATGTTTGATTGTAAAAATGA---
i caePb3.Scfld02_0      C 0 I 531
e caeJap4.Scaffold18213   536395 134 +   720316 I
e cb4.chrX              17458254 880 - 21540570 I
e caeSp111.Scaffold582    266590 329 +   484378 I

a score=753.000000
s ce10.chrX              2708147 31 + 17718866 TGACATTTCAGCAATAAAGTTATCATAGCAG
s caeRem4.Crem_Contig15   240959 31 -  1794024 AGGTAGCCGAGTTGTAAATTTGTCAAAGCAG
i caeRem4.Crem_Contig15 C 0 I 252
e caePb3.Scfld02_0       3400043 531 -  4147112 I
e caeJap4.Scaffold18213   536395 134 +   720316 I
e cb4.chrX              17458254 880 - 21540570 I
e caeSp111.Scaffold582    266590 329 +   484378 I

a score=0.000000
s ce10.chrX              2708178 1052 + 17718866  
e caePb3.Scfld02_0       3400043  531 -  4147112 I
e caeJap4.Scaffold18213   536395  134 +   720316 I
e cb4.chrX              17458254  880 - 21540570 I
e caeSp111.Scaffold582    266590  329 +   484378 I
e caeRem4.Crem_Contig15   240990  252 -  1794024 I

a score=404.000000
s ce10.chrX              2709230 14 + 17718866 AAAAATCAATGGGA
s caeJap4.Scaffold18213   536529 14 +   720316 AATAATGGATGATA
i caeJap4.Scaffold18213 I 134 C 0
e caePb3.Scfld02_0       3400043 531 -  4147112 I
e cb4.chrX              17458254 880 - 21540570 I
e caeSp111.Scaffold582    266590 329 +   484378 I
e caeRem4.Crem_Contig15   240990 252 -  1794024 I

a score=-1116.000000
s ce10.chrX              2709244 27 + 17718866 AGAATGCAACAAGTAATCAGAAGTATT----------
s caePb3.Scfld02_0       3400574 23 -  4147112 AGAATGCAATTAATACC----AATGAC----------
i caePb3.Scfld02_0      I 531 C 0
s caeJap4.Scaffold18213   536543 37 +   720316 AGAgtggagaaaagaaaaaaaagtagatgAGACATTC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17458254 880 - 21540570 I
e caeSp111.Scaffold582    266590 329 +   484378 I
e caeRem4.Crem_Contig15   240990 252 -  1794024 I

a score=-1985.000000
s ce10.chrX              2709271 12 + 17718866 ---ATAATTACCGT--A
s caeSp111.Scaffold582    266919 13 +   484378 ---ATGATAACCGTG-A
i caeSp111.Scaffold582  I 329 C 0
s caePb3.Scfld02_0       3400597 14 -  4147112 ---AAGATAGCCGTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   536580 12 +   720316 TGAGTGACTAGT-----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17458254 880 - 21540570 I
e caeRem4.Crem_Contig15   240990 252 -  1794024 I

a score=11654.000000
s ce10.chrX              2709283 50 + 17718866 AAACGTGACAGACCACTCCTTCG-AAATATGGT-------------AATATATCACA-AATGCCC
s caeRem4.Crem_Contig15   241242 62 -  1794024 AAATGTGACACACCACTCCTACC-AAAAACAGTCCCATTAA-CGGCAATACATCACT-ATTGTCT
i caeRem4.Crem_Contig15 I 252 C 0
s caeSp111.Scaffold582    266932 63 +   484378 AATGGTGACAGACCACTCCtaccaaaaaacaac--aatgaaAAAGCAATATATCACTCATTGTCT
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3400611 61 -  4147112 AAAAGTGACAGGCCACTCCTACC-AAAAACAAC---ATTAAGAAGCAATAGATCACCGATTGTCT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   536592 49 +   720316 GCACGGGACGGACCATTCC-----ATATTTTAT----------GGCAATTGGTCACA-GGTGTCT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17458254 880 - 21540570 I

a score=202273.000000
s ce10.chrX              2709333 363 + 17718866 GGGCAGTAGATAACTATCTT-----------ATGAGAAAAGGTGTGATGCACTAGAAAAG-----GAGACATCAATCCATCATCCTCAAATACAATTCATGGTCATTACGCGGAACAAAAAAAATTCCAGCTCA---T--TGTCG---------------------GTGAG------AAATGG------------ATAAGCGTGAGACTCACAAT-TGA----------ATCTCGTCCGATTT-A---TCGTCGAA---AAGGCCCATTTTTCGCGCAGTAAGTGTCTGACTTTTACGCCTGATAGTGATCTCGGCGGCAGCGGTCAATTCTA--TTTGTACGAAATCG-----------GTGAGGGATGTT--GAGAGAAAGAGGGATTGAATTCCGGCTGTGATTCGG-CAAAG-GGAAAATGAGATTTACGACTGTCCACTGGCCAAAAGTGCGT
s cb4.chrX              17459134 404 - 21540570 GAGGAACAGATGATTATCTTCAacgagaagagagaaaaaaggtgaGATGTActggagaaag--aagaaaaaccgaTCCATCATCCTCAACACT-TCTCATGGTCATTACACCCAGC-CGAATTCCTTCAGCTCATTCTCTTTTCAACACTCTCACTCCACCTCTTCGGAGGGAA--ACAGAAG------------ACGTGCGTGAAATTCAcatt-tgaccattttcggCTG-TGTG-TATCG-ACACACATCCGAACTAGGGCCTATTTTTCGCGCAGAAAGTGTCTGATTCTTACGCCTGATAGTGATCTCG------GCGGTCGATTTCCATTCTGTACGAAATCG-------------GAGGGATGCG--G----AGGCAAGAAGGAAATTCCAGGAGTGATTCGGGCGAGGAAGGGAAAGAGATTTACGAC-------TGGTCGAAAGTGCGT
i cb4.chrX              I 880 C 0
s caeRem4.Crem_Contig15   241304 390 -  1794024 -AGAGGGAGATGATTATCTT-----------AAGGAAAAAGGTGAGATGTACTggacaga---agaaaaaaccaattcaTCATACTCAACACT---TCATGGTCATTACTCC-------AAATTCTTCAGCTCA---TCTTTTCGTGTCACTCTTTCTTCCAATTCATGAGACC--AAACGAG------------ATGTGCGTGAAATTCACACT-TGACCATCTAGGGCTGTTGTG-CGTTC-A---ACGTCGAA---AAGGCCTATTTTTCGCGCAGAAAGTGTCTGATTCTTACGCCTGATAGTGATCTCG------GCGGTCGATTTCA--TTTGTACGAAATCGGCAATCG----GTGAGGGATACGTTG----AAGGAGGGATTGAATTCCGGGAGTGATTCGGACGAgg-ggaaaatgagatttacGACTGACCAGTGGCCGAAAGTGCGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    266996 386 +   484378 AAGAAA-AGATAGTTAtctt----------aatgaaaaaaggtg-GATGCActgggaaaaa----gaaaaaacaatccATCATACTCAACACCATTTCATGGTCATTACGCT-------GAATTTCTCAGCTCA---TCATGTCA---CTCCACAACGGCCGATTCATGAGGCC---AATGAG------------ATGTGCGTAAAATTCACACT-AGTCCATCTTTGGATGTTGTGTCGTTT-A---ACGTCGA----AAGGCCTA-TTTTCGCGCAGAAAGTGTCTGATTCTTACGCCTGATAGTGATCTCG------GCGGTCGATTTCA--TTTGTACGAATTCGGCAATGG----GTGAGGGATGTC--G--AAGAGGAAGAATTGAATTCCGGGAGTGATTCGG-Tgagg-gaaaaatgagatttacGACTGTTCAGTGGTCGAAAGTGCGT
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3400673 393 -  4147112 GAGAAATAGATGGCTATC-T----------AATAGAAAAAGGTGAGATGcactgggaaaaa--agaaagaagcgATCCATCATACTCAACACTATTTCATGGTCATTACGCC-------GAATTCCTTAGCTCA---TCGTGTCAGTCCACCACCACGAGCGATTCATGAGGCC--AAATGAG------------ATGTGCGTAAAATTCACACT-TGACCATCGTTGGATGTTGTGTCGTTTAA---ACGTTGA----AAGGCCTATTTTTCGCGCAGAAAGTGTCTGATTCTTACGCCTGATAGTGATCTCG------GCGGTCGATTTCA--TTTGTACGAAATCGGCAATGG----CTGAGGGATATT--G----GAGGAGGGATCGAATTCCGGGAGTGATTCGG-CGAGG-GGAAAATGAGATTTACGACTGTCCACTGGCCAAAAGTGCGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   536641 366 +   720316 ----GGAAGATCTTTATCTG----------TTTGGAAAGAAA---GGTGCACTTCAAGAATGGAATGAAAACCGATCCATCATACTCA---CT-GTTCACGGTCATTTCGAT------------------CACA---CCTCTGCA------------------TGCGTGAAGGAGGGAAAGAGGCACTTTGGAAAAAGAGCGGCAAATTCACACTCCAACCCCCGTCAACAGTCG---CAGAA-G---ACGTTGAA---AAGCCCTATTTTTCGCGCAGAATGTGTCTGATTCTTACGCCTGATAGTGATCTCG------GCGGTCGATTTCA--TTTGTACGAAATCGGCAATGGGCGAGTGAGGGACGCG--G--------AGGGATTGAATTCCGGGAATAATCCGC---TAG-GCGAAATGAGATTTACGACTGTCTTTTGACCGCAAGTGCGT
i caeJap4.Scaffold18213 C 0 I 856

a score=15144.000000
s ce10.chrX              2709696 129 + 17718866 TTGTTGAGGAGTAGGGCCTAGTCTTGACAACGTTTCAGACAG------------TAGA-----CAACGAAGATTTTGCAATTTTTGATTACTGAA-AATAAGAAAGGCGAGACGTGTTTTCAAAAATGCGGAATTTCGTCAATTTTT
s cb4.chrX              17459538 119 - 21540570 T----------TGGGG--TGGTCTGTCGGTAATTTAAGAcaaatagaaac-----aaa-----aaaaaatagtatctCGATTTAttattactgaa-aaaaaagtg---acaacgtgttttgagaaattccgaTCTC--ACTATTTTT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   241694 134 -  1794024 T-GCAGACAAGTGGGG-CTAGTC---cgaacatttcagaaaaggaGGAACATAGTaaa-----aaaaCAAAGGTTTCCGATTTGTGATTACTTACTGAAAGAATA---AAAAcgggttttcagaaatttgaaattccgaCCGTTTTT
i caeRem4.Crem_Contig15 C 0 I 233
s caeSp111.Scaffold582    267382 124 +   484378 G-TTAGATGAGTGGAT----TTC---agattgattctgaaaatgaagtcG----TGGTTAGTGAGAACACATGTGTCTGATTTATGATTACTCAA-AT----------AAAACGAGTTTTCAGGAATTCGATGTTCTGACCGttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3401066 124 -  4147112 T-GCAGATAAGTGGGG----GCA---TGggcatttcagaaaa--aggtaC----TGAC-----AAAACGCAGGTTTTCGATTTGTGATTactgaa-acaatgaaa---aaaacgtgttttctgaaattccaagttCTGACCGTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   537007 856 +   720316 I

a score=220.000000
s ce10.chrX              2709825 2 + 17718866 CT
s cb4.chrX              17459658 2 - 21540570 GT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold582    267506 2 +   484378 tt
i caeSp111.Scaffold582  C 0 I 235
s caePb3.Scfld02_0       3401190 2 -  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=629.000000
s ce10.chrX              2709827 15 + 17718866 G---ATTCTATTTTT---TGT
s cb4.chrX              17459660 21 - 21540570 GGCTATTCTGGTGATCTGTGT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3401192 14 -  4147112 ----ATTCTGTCTAT---TGT
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=200.000000
s ce10.chrX              2709842 2 + 17718866 GG
s cb4.chrX              17459681 2 - 21540570 GG
i cb4.chrX              C 0 I 66
e caePb3.Scfld02_0       3401206 45 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=0.000000
s ce10.chrX              2709844 21 + 17718866 AAAACATCGGCCAATACACCG
e caePb3.Scfld02_0       3401206 45 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e cb4.chrX              17459683 66 - 21540570 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=104.000000
s ce10.chrX              2709865 42 + 17718866 TGTTCATGT------------------------------------GTACTGA---CTAACACCTGACCAG------GTTCTATCCGG
s cb4.chrX              17459749 87 - 21540570 TGTTCATATAGTGAGAAAGTGGAAGGAAAGCATGTGTGAAAGGAAGTGCTGAGGATTCACACCTAGCTAGACGGCTGTCTCATCCGG
i cb4.chrX              I 66 C 0
e caePb3.Scfld02_0       3401206 45 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=-8070.000000
s ce10.chrX              2709907 152 + 17718866 ----AAACAGAAGAGTGTTGCATAGGTGTTAAAAGCAAAAATGA------------GCATCGAT--TACGGT-----GCTGTATG----TAGCTGTGAATGTAATAGGGTTTCTAGATTATCACTTTTAAATTTGGAAGACATAATTGAATACTAATAAACCGTATATTGCaaataatt----
s cb4.chrX              17459836 151 - 21540570 AAACAGCCAACATGAGGTGA---------TAAAAGCGAAAATGACAGTGGACACTTGCCTCGGGTATACAGT-----ACTG---GTTCTGAACTGTGAAGGgaaaagatttttcag---------tttttctttgaaactgaaaatgtgattttagGCTG------ATTGTGTATAAGTTATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3401251 106 -  4147112 ----ATACATTATAATGTT----------------------------------CATACGTTGTTCATATAGTGAGAAAGTG---G----GAGGTGTGAAAGTGGA--------------------TTCCCACCTGG----GCAATTGCCACATCCGGAAG----ACATAGCAAGTAGGT----
i caePb3.Scfld02_0      I 45 I 50
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=-8.000000
s ce10.chrX              2710059 19 + 17718866 t--tttttttaaatttGAAAC
s cb4.chrX              17459987 18 - 21540570 TAATTTCGGTAA---TGAAAC
i cb4.chrX              C 0 I 38
e caePb3.Scfld02_0       3401357 50 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=0.000000
s ce10.chrX              2710078 30 + 17718866 ATTTTATTGACCTTTTAGTGTGTAAATATG
e caePb3.Scfld02_0       3401357 50 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e cb4.chrX              17460005 38 - 21540570 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=60.000000
s ce10.chrX              2710108 2 + 17718866 GA
s cb4.chrX              17460043 2 - 21540570 aa
i cb4.chrX              I 38 C 0
e caePb3.Scfld02_0       3401357 50 -  4147112 I
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=-28728.000000
s ce10.chrX              2710110 468 + 17718866  
s cb4.chrX              17460045 631 - 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3401407 312 -  4147112  
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I
e caeRem4.Crem_Contig15   241828 233 -  1794024 I

a score=-6713.000000
s ce10.chrX              2710578 53 + 17718866 -----ATATAAATTCATAGCAAAAAAATCACTTACTCTACAAAAATAAGTCCTAGAAT
s cb4.chrX              17460676 40 - 21540570 ----gCTTC-AACTCATAGCAGAAGTATAAGATTCTC------AATATTTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   242061 47 -  1794024 -----ATGC-AAATTTCTGTGAAACAATTACTTCcactttcaaaatatttcat-----
i caeRem4.Crem_Contig15 I 233 C 0
s caePb3.Scfld02_0       3401719 35 -  4147112 ATCAAATGG-GATTCGTTCGAAAATTG-----TTTAC------ggta-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   537007 856 +   720316 I
e caeSp111.Scaffold582    267508 235 +   484378 I

a score=8362.000000
s ce10.chrX              2710631 268 + 17718866 TAAATTTTATTTTGAATAGTTAAAAA----AAAACAAGAAACAAAAAAGTT--------------CCTCCCTG-AATACAGGAAAAATGTCAAAGAAACA---TTT----------------------------ATGTACGGGACACATTTT--------GGAGAA---------AAA-------------TCTTTTTTTTCTGAGAATTCTC---------TATTTG-CGTTCTCCTCCAATTCTCCC------G---TCCATTGTATCATCAGATGACAT-GAAACTACCGTCTTCAGGTTG------TGTTGATT-------TAA-TTCCAGAATG------CAAAACCAGTTTTCTTTTCCTGTGAGTATGAAAATCATGAAAA
s cb4.chrX              17460716 284 - 21540570 ----Cacaa-tttgaa---caaaatacagtaatccaaaaaaagatcATTTTTACGTCTTTATTTTCCCCctca-aaaaaatacagaagCCCAaagaa-------------------------------------ataattaaaaaaaactttccct----TAACAA---------GGC------AACAAAGTTTTC--------------------------TGTTTGCCGTTTTCcttcacttctttttcttcagatgGCGGTTGTATCATCAGATGACATAAAAACCACCGCCTGCGAGTTTTGCCAGTGTTGATTTAATTCCCGA-TTCCAGAATAAATGACAACAACCGGTTTTTGATTTC-TGGGAAATCAA-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   242108 290 -  1794024 ttcatttta-tttgaattcctAAATACAG-GTtacaggaaaaattgaactg-------------------tTG-AAGccatggagaag-aaaaagaattg----------------------------------acacctgaaaattgtttttttt----tcacaaactgTTTCTGAG------AACAGAATCTTTTTCTGAAGGCAAGAAACCATAAATTGTGTTTG-CGTTTTCCTTCGATTCTTTC------GAT-GTGGTTGTATCATTTGATGACAC-AAAACCACCGTCCATGAGTTT------TGTTGATT-------CAA-TTCCAgaataaatcgaaaaaaccgGTTTCTggt----gggaaaattgaaa----actga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    267743 271 +   484378 -------------TAAATCCTACgta----attattgaaaa----------------------------aatagaagaaatataGGAATACAGGTAAACT---TTCCAA-------GTTTCTCATGTTTTCTG-TAACACTGAAGACACTTTCtct----gaagga---------gaagaaaacgacaatgtcttttctctc--------------------tatttg-cGTTTTCCTTCAATTCATCT------T---GTGGTTGTATCATCCAATGACAT-AAAACTACCGTCCTAGAGTTG------TGTTGatt-------caatttccagaaaatgtgAACGGAACCGGTTCTtcat----gagaaaatggaaatgaagaaga
i caeSp111.Scaffold582  I 235 C 0
s caePb3.Scfld02_0       3401754 286 -  4147112 --------------aaacttt----------ttgttgaaaattttgaccat-----------------caata-aaaaactagaTAATTAccggaaatttcaatttcaatatttgcatttctcatgtttttcatttcctttggaaacacttttttcagtagaagaa---------gaagaaa--gacaaCATCTTCGTTCTC--------------------TATTTG-CGTTTTCCTTCAATTCATCT------G---GTGGTTGTATCATCGAATGACAT-AAAACTACCGTCCCAGAGTTA------TGTTGATT-------CAA-TTCCAGAATAAATGAACGAAACCGGTTTCTGGT----GGGAAAATGGACGTTTTTATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   537007 856 +   720316 I

a score=118126.000000
s ce10.chrX              2710899  898 + 17718866  
s cb4.chrX              17461000 1323 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   242398  904 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    268014  832 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3402040  978 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   537863  852 +   720316  
i caeJap4.Scaffold18213 I 856 I 64

a score=177.000000
s ce10.chrX              2711797 4 + 17718866 -ATGT
s cb4.chrX              17462323 5 - 21540570 GAAGT
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig15   243302 4 -  1794024 -aagt
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    268846 4 +   484378 -GAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3403018 4 -  4147112 -CAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   538715 64 +   720316 I

a score=895.000000
s ce10.chrX              2711801 7 + 17718866 TTTATTT
s cb4.chrX              17462340 7 - 21540570 tgtagtt
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold582    268850 7 +   484378 TGGATTT
i caeSp111.Scaffold582  C 0 I 27
s caePb3.Scfld02_0       3403022 7 -  4147112 AATAGTT
i caePb3.Scfld02_0      C 0 I 111
e caeJap4.Scaffold18213   538715 64 +   720316 I
e caeRem4.Crem_Contig15   243306 8 -  1794024 I

a score=-2982.000000
s ce10.chrX              2711808 435 + 17718866  
s cb4.chrX              17462347 465 - 21540570  
i cb4.chrX              C 0 I 111
e caePb3.Scfld02_0       3403029 111 -  4147112 I
e caeJap4.Scaffold18213   538715  64 +   720316 I
e caeSp111.Scaffold582    268857  27 +   484378 I
e caeRem4.Crem_Contig15   243306   8 -  1794024 I

a score=0.000000
s ce10.chrX              2712243 80 + 17718866 TCGGACTGTCCGGTCTAAAACGAACGCGAGACATCCGGCATTTGCAGAACCGGACGGCGTCCGGGTTGCCTACTCCTCCG
e caePb3.Scfld02_0       3403029 111 -  4147112 I
e caeJap4.Scaffold18213   538715 64 +   720316 I
e cb4.chrX              17462812 111 - 21540570 I
e caeSp111.Scaffold582    268857 27 +   484378 I
e caeRem4.Crem_Contig15   243306  8 -  1794024 I

a score=182.000000
s ce10.chrX              2712323 2 + 17718866 TT
s cb4.chrX              17462923 2 - 21540570 tt
i cb4.chrX              I 111 C 0
e caePb3.Scfld02_0       3403029 111 -  4147112 I
e caeJap4.Scaffold18213   538715 64 +   720316 I
e caeSp111.Scaffold582    268857 27 +   484378 I
e caeRem4.Crem_Contig15   243306 8 -  1794024 I

a score=-420.000000
s ce10.chrX              2712325 10 + 17718866 AACAATCCAA
s cb4.chrX              17462925  5 - 21540570 ---act--aC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   243314 10 -  1794024 aACACTTGAA
i caeRem4.Crem_Contig15 I 8 C 0
e caePb3.Scfld02_0       3403029 111 -  4147112 I
e caeJap4.Scaffold18213   538715 64 +   720316 I
e caeSp111.Scaffold582    268857 27 +   484378 I

a score=456.000000
s ce10.chrX              2712335 1 + 17718866 -T
s cb4.chrX              17462930 1 - 21540570 -T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   243324 1 -  1794024 -T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    268884 2 +   484378 tt
i caeSp111.Scaffold582  I 27 C 0
e caePb3.Scfld02_0       3403029 111 -  4147112 I
e caeJap4.Scaffold18213   538715 64 +   720316 I

a score=-547.000000
s ce10.chrX              2712336 3 + 17718866 TCA
s cb4.chrX              17462931 3 - 21540570 CTA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   243325 3 -  1794024 TCA
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    268886 2 +   484378 tc-
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   538779 3 +   720316 tta
i caeJap4.Scaffold18213 I 64 C 0
e caePb3.Scfld02_0       3403029 111 -  4147112 I

a score=632776.000000
s ce10.chrX              2712339 791 + 17718866  
s cb4.chrX              17462937 824 - 21540570  
i cb4.chrX              I 3 I 30
s caeRem4.Crem_Contig15   243335 789 -  1794024  
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    268888 772 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3403140 823 -  4147112  
i caePb3.Scfld02_0      I 111 C 0
s caeJap4.Scaffold18213   538782 813 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-2268.000000
s ce10.chrX              2713130 22 + 17718866 AACGCCAAAGTCTT-----------------GCGCGTAG
s caeRem4.Crem_Contig15   244124 28 -  1794024 -----GGAAACCTTCTCACCCGCTC------ATTCGCAA
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    269660 28 +   484378 -----GAGAATCTTCGTACTCGCTC------AATCGCAG
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3403963 28 -  4147112 -----GGAAACCTTCTCACCCGATC------AATCGCAA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   539595 26 +   720316 ----------GCCTCGCGCGGGGCATACAAGAATCG---
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17463761 30 - 21540570 I

a score=178584.000000
s ce10.chrX              2713152 363 + 17718866 -----CAACGCACATAAAAAGCGGGTCAATCCGATAATAATCGCAATGACATTTTAG------GCGG-------------CGGCAAAACTGCCTAGATCAATATCT-------AGAGGTCTCCTCTCCGTC--------TT-----------ATTCGT------------ACGCTTACCGGTGCGATATCTGGGTGGATG------ACCGTATCGTTCAGCAGGACTCGGCGGTGACGCGCGGGCCATGCTTCGGTATCTAGGTGACGATGGAGATCGATTATCTTGAGCCAACAAATGTTCGGTCTGGAAAGGGA-AAGTTGAAAGTGAGT---------A----TTAAAACGGATAGCA-AGGGTA----AGACTTCTA-----AAGAAAACAACTACACAAATAAATTCGGTTT--GGCATTT-------TTGTT--GGT-TTAAATG-----CAGAAATTATGAAAAA---
s cb4.chrX              17463791 398 - 21540570 -----CATCGGACATAAAAAGCGGGTCAGTCCGATAAGTATCAGAATGGCAttttttttGCGGGTAGAGAGAAGGGAAAACGGCGAAACTGAGTAGATTACAATCTTCCTTGGTGTGGATTCAACCCCGTCATCCG----------------TTTTGC------------ATACTTACCTGTGCGATATCTGGGTGGATGACCACTACCATATCGTTCGGCGGGACTAGGTGGCGAGGCACGGGCCATGCTCCTATACCGAGGTGAAGATGGAGAGCGATTGTCTTGAGCCAACAAATGCTCGGTCTGAAAAAGAA-TGA-TAGAACTGTTCTAGAAGAAAA----TAAGGATGCA----A-AGGATA----AGAAGTCTA--------GGAACAAATGCACAA------TGAttta--aacacattttttgctgaattGGTT-TTAGTTT-----GAGGCGTT----agaa---
i cb4.chrX              I 30 I 2
s caeRem4.Crem_Contig15   244154 373 -  1794024 -----CATCGGACATAAAAAGCGGGTCAATCCGATAAGTATCAGAATGGCATTTTTT-----AGTGG-------------CGGCAAAACTGCGTAGATTGTTATCT-------CGAGGAATCTTCTACCTCATTCGCCCTCTTTCCTTCCCTCTTTTC------------TTCCTTACCTGTGCGATATCTGGGTGGATG------ACCGTATCGTTCAGCAGGACTCGGCGGTGAAGCACGGGCCATGCTCCGATATCGAGGTGAAGATGGCGATCGATTGTCTTGAGCCAGCAAATGCTCTGTCTGAAATGGAT-TGATTAGAACCAAGTTAT------G----TTAGAATGCA----A-AGGATA----AAATGTCTA--------GGAACAACTACACAA-------AAtctc--aactcatttttt--tgagt--gac-tGAGTTT-----GAgggatt----agaa---
i caeRem4.Crem_Contig15 I 2 I 72
s caeSp111.Scaffold582    269690 350 +   484378 -----CAACGGACATAAAAAGCGGGTCACTCCGATAAGTATCAGAATGGCAATTTTT--------GG-------------CGGCAAAACTGCATAGATGCTTATCT-------TGGGGGTTCATTCTCCTCGATTTCCCTT-----------AGTCAT-----------GACACTTACCGGTGCGATATCTGGGTGGATT------AGCGTATCGTTCAGCAGGACTCGGCGGTGAAGCACGGGCCATGCTCCGATATCGAGGTGAAGATGGCGATCGATTGTCTTGAGCCAATAAATGCTCGGTCTGAAATGGAATGGATGAAAACTTAA----------AACTCAGGAGATGCA----ATAGGGTA----AATTTTCTA--------GGAACAACTACACA-------TAGTTTC--AACACAT-------tgtgt--ttc-------------gaaaaatc----tgag---
i caeSp111.Scaffold582  I 2 I 8
s caePb3.Scfld02_0       3403993 369 -  4147112 -----CATCGGACATAAAAAGCGGGTCAATCCGATAAAAATCAGAATGGCATTTTTT--------GG-------------CGGCAGAACTGCGTAGATCACTATCT-------T-GAGGTCTATTTTCCCCGGGTTTCCTT-----------CTTTGC----------AAACACTTACCGGTGCGATATCTAGGTGGATT------AGCGTATCGTTCAGCAGGACTCGGCGGTGAAGCTCGGGCCATGCTCCGATATCGAGGTGAAGACGGCGATCGATTGTCTTGAGCCAACAAATGCTCTGTCTGAAACAGGA-GTGTTAAAACTGAA----------A----TGGAAACTTATTG-ATAGGGTA----AATTGTCTA--------GGAACAACTACacagaaattttagttttcaaaaatgt-------tgagt--ttcatcagttt-----gaaaaatcatgtaAAA---
i caePb3.Scfld02_0      I 2 I 8
s caeJap4.Scaffold18213   539621 402 +   720316 CAGCGCGTCAGATATAAAAAGCGGGTCAATCCGATAAGTATCAGAATGGCATTTTTG------TCGG-GGCCCGTCGAACCGTCAAAACTGCGTAGATGGGTATCT-------GGCGGCCTTCGCTC-------------------------TTTTGCAAGTAATACCAGTGACTCACCGGTGCGGTAGC---GTGGAGG------ACCGTATCGTTCAGCAGGACTTGGCGGTGATGCTCGTGCCATGCTCCGATAGCGTGGAGAGGATGGTGAACGATTGTCTTGAGCAAGTAGGTGTTCCGTCTGAAATTGGT-TTAgtgaaaatgaaacaa------a----aaagaagaca----a-agaggaaaggaaacgtctatgtatataaaaacaacTACAACG--AGTTTTATTTC--AGCATTTGagat--tgaaa--ttt-tcaagtttgatggagaaaatgaacaaaaaaa
i caeJap4.Scaffold18213 C 0 C 0

a score=-7789.000000
s ce10.chrX              2713515 62 + 17718866 TTAACTTGCATGCAAAAATTTACTTTGACGATCAGCAG-------CAAAAATGTTGAAA-------------TTATTTTTCA
s cb4.chrX              17464191 54 - 21540570 ------tacggaaaaaaacaatgagaGGAAAATCATgc-------agaaagtttgaa---------------tttttcggaa
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold582    270048 53 +   484378 gtaaaatatgggaaaaaac----------atgccaaaa-------tgaaatttttaaaa------------cttgttttaaa
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3404370 72 -  4147112 ATgaaatgttgaagaaaatgatt-ttggaattctaTTC-------TAAAACTATCGAAATCGTAATGCTGTCTTGTTC--AA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18213   540023 69 +   720316 ggaacatGCATGCGAAAAACTTTGCATTCAATCCATAAACTTATGTCAAAATgtttaaa-------------ttattttcca
i caeJap4.Scaffold18213 C 0 I 1
e caeRem4.Crem_Contig15   244527 72 -  1794024 I

a score=-1542.000000
s ce10.chrX              2713577 29 + 17718866 AAATCGCATTAAAAATATACTAACTTGCA
s cb4.chrX              17464245 24 - 21540570 attcaaaattcgaaac---atgttttg--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    270101 27 +   484378 agatgttatccaaaaaat-ataCTCTGA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3404442 29 -  4147112 Aactgaagttcaaaaaataatatttttca
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold18213   540092  1 +   720316 I
e caeRem4.Crem_Contig15   244527 72 -  1794024 I

a score=1323.000000
s ce10.chrX              2713606 12 + 17718866 AAATAttaaaag
s cb4.chrX              17464269 12 - 21540570 aaaacccaaaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    270128 12 +   484378 AAGtctcaaaag
i caeSp111.Scaffold582  C 0 I 47
e caePb3.Scfld02_0       3404471 37 -  4147112 I
e caeJap4.Scaffold18213   540092  1 +   720316 I
e caeRem4.Crem_Contig15   244527 72 -  1794024 I

a score=-2616.000000
s ce10.chrX              2713618 408 + 17718866 tggagtagtgccatttaggaaattgttaaaaaccactttcacgatgccaaaatgacaaaatatcata---gtaaagcttttcaaaaaagttcggaaaattttttattgacagtcaaaaagtggcaattactgagtttttgctcgcagaccatataattttcaaaatataaaactaaataaaaaatcat------ataaaatttagaacattttttgatttagttttactatgatattagctcattatggtaccatttgcgagttttgaagcaatt-ccctacCACCTTTGAATCTAAATAATTTCTGTGAGGTAAGAATAAACTTATAACTTTTTTTTAAGCGAATAAAAAATCTACCCGTAATTTGATAAAGTTTGCATGATAGTTGATTTTGTCAACTTTATGATATAATTTCAAA
s cb4.chrX              17464281 253 - 21540570 tg-----------tTTAGGATACTGTAAA---------------TGCTTTAATACAAGCATACCCTATGAgtaaacttt-------aagctc--------------------------------aatta-----tctcggttc--------------cttcagaagatat-------caaaaaattatcaactgataaaatgttgataataTTTCGA------------GAAATATTGcatca------------------gttgaaaaataattgataTCTCAcatagaaatcaagataatt-----gagctcaaaatgcacatATA--------------------------------------GGTAGAGCTTGGGTTATAGC-ATTTCcgttaacaaaattttctaacttAACA
i cb4.chrX              C 0 I 58
e caePb3.Scfld02_0       3404471  37 -  4147112 I
e caeJap4.Scaffold18213   540092   1 +   720316 I
e caeSp111.Scaffold582    270140  47 +   484378 I
e caeRem4.Crem_Contig15   244527  72 -  1794024 I

a score=0.000000
s ce10.chrX              2714026 45 + 17718866 CAAAGATATAGAATTTGTTTTAATCATTACTCAAAAATTTATGAA
e caePb3.Scfld02_0       3404471 37 -  4147112 I
e caeJap4.Scaffold18213   540092  1 +   720316 I
e cb4.chrX              17464534 58 - 21540570 I
e caeSp111.Scaffold582    270140 47 +   484378 I
e caeRem4.Crem_Contig15   244527 72 -  1794024 I

a score=-794.000000
s ce10.chrX              2714071 212 + 17718866 TTTACAAAAATATTATTACCCTTTACAGGGGATTGGTTtaaaattcatatcggtaaaaagattttgttaatgataaccccgaaaaaatctagttgcaacagagcagttttagccaagttatgacgttttcaaattg-----------tcccgtttaaaaaaaaaactacaaattccgaaaaaaaACCTTGCAGTTACTTGGGTAAACCATTTTAATTGTAGCT
s cb4.chrX              17464592 163 - 21540570 ttgataaaaattagagaaatgttcactgaaaattgactgaaatt----atTCGTAA-------TTATCACAGACATCTCC-ACGAattattcttcaaaaataaagattctaat---------actttttcaaattggatGATTAAGGTTCAATTcgtaagaaaaatttcaaatt-------gacaCCTCA--------------------------------t
i cb4.chrX              I 58 C 0
e caePb3.Scfld02_0       3404471  37 -  4147112 I
e caeJap4.Scaffold18213   540092   1 +   720316 I
e caeSp111.Scaffold582    270140  47 +   484378 I
e caeRem4.Crem_Contig15   244527  72 -  1794024 I

a score=-233.000000
s ce10.chrX              2714283 8 + 17718866 ATATTTTT
s cb4.chrX              17464755 8 - 21540570 gcatgatt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   540093 8 +   720316 ACAATAAC
i caeJap4.Scaffold18213 I 1 C 0
e caePb3.Scfld02_0       3404471 37 -  4147112 I
e caeSp111.Scaffold582    270140 47 +   484378 I
e caeRem4.Crem_Contig15   244527 72 -  1794024 I

a score=-2459.000000
s ce10.chrX              2714291 39 + 17718866 ATTTTTCACCAA-----------AATTTT---TTTAAAAAATCAACAAACCAA
s cb4.chrX              17464763 30 - 21540570 --ttttttc--------------aatttt---ttcaaaattttat---gctg-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   244599 51 -  1794024 ACTTCCTTCTAAAATTTCTGgttagttttgaatttaaaattgcAT--AACTGT
i caeRem4.Crem_Contig15 I 72 C 0
s caeJap4.Scaffold18213   540101 39 +   720316 ACTTTTCTTTGG-----------TATATT---TAGCAAATACCAACTAACTAG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3404471 37 -  4147112 I
e caeSp111.Scaffold582    270140 47 +   484378 I

a score=-2406.000000
s ce10.chrX              2714330 10 + 17718866 TCCCTTGTTT---
s cb4.chrX              17464793  9 - 21540570 -cCGGTAGAA---
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   244650 10 -  1794024 CCCTTTAAAA---
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    270187 10 +   484378 TCCCTTGAAT---
i caeSp111.Scaffold582  I 47 I 4
s caeJap4.Scaffold18213   540140 10 +   720316 ---ggtaatattg
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3404471 37 -  4147112 I

a score=19841.000000
s ce10.chrX              2714340 141 + 17718866 AACATGCATGGAAAAAGGAAAACATGGAA----------AACAAACCAAAA-ACAAGCA--GAAAAGCATGCGAGAAAA---GAAGAGGATCTAA------TAAT---TTCTACAAGCAT-------GTGCTT----AAAACTCCGTGCCAAAATACATA--TATAAACAGCA--AAAAAA
s cb4.chrX              17464805 126 - 21540570 AACAC-----------AGATAA-A-------------------AACCAATA-ACAAGCAAGAAGAGGCatgcagaaaaatgaaaaaaaaatcaat------tttt---ttctacaagCAGCAAAATTATGCCT------AATATCGTGCAGTACTAT-----TATt-gcagca--aaaaaa
i cb4.chrX              I 3 I 19
s caeRem4.Crem_Contig15   244663 136 -  1794024 AACATGc-tgaag-aaagagaa-atga------------aac-aaccaaaa-acaagca--gaaaagcatgcaggaaaa-gagaaaagaatctaC------TGAT---TTCTATAAGCAA-------ATGGCT------AAAATCGTGCAAAACTATGGCACTATCAGCATTA--AAAAA-
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    270201 137 +   484378 AACATGc-tgaaaaagggggaa-atgaaa----------aac-aacaaaga-tgaagca--ggaaagcatgcgggaaaa-gagaaaataa-ctAT------CGAG---TTCTATAAGCAT-------GAGCCT-----GAAAACCGTGCAAAATTAC-----TATTACTATTAGCAAGATA
i caeSp111.Scaffold582  I 4 I 1
s caePb3.Scfld02_0       3404508 136 -  4147112 AGCATGC-TGGAgtaaggaaaa-atgaaaat--------aac-aacCAATA-CAAGCAG--GAAAAGCATgcaggaaat-gagaaaa------at------cggaagtttctagaagcaA-------ATGCCT----AAAAAACCGTGCAAAACTAC-----TTGTAGCATCA--AAAACA
i caePb3.Scfld02_0      I 37 I 1
s caeJap4.Scaffold18213   540150 142 +   720316 -------aaaaaaaaagaagaa-aagaaagtaaaagaaaaac-aaccaaaattcaagcc----aaatcatgcaggaaaa-aagaaaaaaaactataatcTATGTA---TATTCAAGCCAT-------ATGCCTTAAACGGATTTCGTGCAAAAAGAC------------GGCA--AAAAA-
i caeJap4.Scaffold18213 C 0 C 0

a score=-4971.000000
s ce10.chrX              2714481 17 + 17718866 CTCATAACCATT--CTG--------------TT
s caeRem4.Crem_Contig15   244799 16 -  1794024 -------CCAATTATTAAACA----------TT
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    270339 16 +   484378 -----AACCAAT--TCGAACA----------TT
i caeSp111.Scaffold582  I 1 I 1
s caePb3.Scfld02_0       3404645 26 -  4147112 -----ACTcaat--ccgaaaaatcagaCTTTTT
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18213   540292  7 +   720316 ----------CT--CTG--------------TT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17464931 19 - 21540570 I

a score=239840.000000
s ce10.chrX              2714498 533 + 17718866  
s cb4.chrX              17464950 542 - 21540570  
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig15   244816 544 -  1794024  
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    270356 563 +   484378  
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3404672 527 -  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   540299 504 +   720316  
i caeJap4.Scaffold18213 C 0 I 45

a score=-10869.000000
s ce10.chrX              2715031 39 + 17718866 AAATGAACGTTTGAT---GTCTGATTTGTGTACATTTGCTGA--------------
s cb4.chrX              17465492 38 - 21540570 GATC---CCTATGGT----TTTGATTAGTGGTTG---TCTGAAATGGG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   245360 42 -  1794024 g-------ttttgat----ttggTTGAGGACATA---TCTGAAACGAGAGATTTGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    270919 30 +   484378 c-------gtttttc----tttcatctgGA-------GCTGAAAAAGG--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3405199 40 -  4147112 c-------gttttgtttgatttgatCTGTGGAAA-ATGCTGAAATAGT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   540803 45 +   720316 I

a score=94033.000000
s ce10.chrX              2715070 108 + 17718866 TCGGTT----GCACCTACCTGATGCGGATTGTGGTCGGCTGATGTGCCTCGTCGAATTTTCGAGAACATATCCGACAAACGCCTGCCAGTCGAGTTCATCTTTTCGCTGGAA
s cb4.chrX              17465530 112 - 21540570 TGGGGTTAGAGAGCATACCTGGTGTGGATTGTGATCGGTGGAGTTGCCGCGGCGGATCTTGGAGAACATGTCCGACAGGCGCCTGCCGGTTGAGTTCATTTTGTCGCTGGAA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig15   245402 112 -  1794024 TGGGGCGCTATTCCATACCTGGTGTGGATTGTGATCGGCGGATGTGCCCCGTCGGATTTTCGAGAACATATCCGACAAGCGTCTGCCTGTCGAGTTCATTTTGTCGCTGAAA
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    270949 109 +   484378 TAGTTT---ATAGTATACCTGGTGTGGATTGTGATCGGCTGAGGTGCCCCGGCGGATCTTCGAGAACATATCCGACAAACGTCTGCCTGTggagttcattttttcgctgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3405239 109 -  4147112 GAGGTT---TCGGCATACCTGGTGTGGATTGTGATCGGCTGAGGTGCCCCGGCGGATCTTCGAGAACATATCCGACAAGCGCCTGCCTGTGGAGTTCATTTTGTCGCTGAAA
i caePb3.Scfld02_0      C 0 I 134
s caeJap4.Scaffold18213   540848 108 +   720316 ----TTAGTAAAATTTACCTGATGAGGATTATGATCTGCAGAGGTACCACGCCGGATTTTGGAGAACATATCGGAGAGACGTCTTCCAGTAGAATTCATTTTCTCActtaag
i caeJap4.Scaffold18213 I 45 C 0

a score=910.000000
s ce10.chrX              2715178 1 + 17718866 A
s cb4.chrX              17465649 1 - 21540570 A
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig15   245521 1 -  1794024 A
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    271058 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 103
s caeJap4.Scaffold18213   540956 1 +   720316 a
i caeJap4.Scaffold18213 C 0 I 39
e caePb3.Scfld02_0       3405348 134 -  4147112 I

a score=-2607.000000
s ce10.chrX              2715179 47 + 17718866 TTGGTTTTTTAT--------TAGAAGCGTGATAGTAATTTAAAAGTTCGATATGA
s cb4.chrX              17465650 29 - 21540570 ATCATTGGTTGTGAATACTAGAGAAGcgt--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   245522 51 -  1794024 TTTGATATTTATGGAACAGATTCGAGcttgatttttatt----agttctatCTGA
i caeRem4.Crem_Contig15 C 0 I 92
e caePb3.Scfld02_0       3405348 134 -  4147112 I
e caeJap4.Scaffold18213   540957 39 +   720316 I
e caeSp111.Scaffold582    271059 103 +   484378 I

a score=-1959.000000
s ce10.chrX              2715226 403 + 17718866 TACAACCTTCCAAACAAAAAAACTACAGAAGCATTTTTAAAGT-----------GGAGCCAGTTGTGCAATACAATTTTTTGTTTTTTTAAATTTGAATTTTACAGTTAAAAGTTGACAAGAACGAAGTTTTCAA---ACACAGTGCTGGCCATAAAGGTATGGAAAAAACTGATTTTTTTGTGA---ATAGAGCTCTGAAA-----TAAAACAACT-CGAAAACTAAACTT----GGAGCACATTTTTCAGAATGATTTTTTACAGGCCCCTACTTCGAAAAAAACGTTTTTCAA-TAAATCATTTTCAT-------ATGATTTTCTATTATTTGTTCTTCAATTATTTTGATTTCGAACAGTCAGaaaatttggcgatttacca------aaactttggtaaaaatttttgaaaaatctaa-------------aaactgt------ttagatg--ttttatt
s cb4.chrX              17465679 414 - 21540570 --------------cgaaaaaataaatgaaacacattcaaaatttatgttcTATAGCGCCA-TTGTAAACTTCTAATTTGtcctcattta--tctcggtttctctGATAGA---Tagcaaaaat----ctgtcaactgataaaatgtttgtgataacattt---------ccaacatttttgtggtttgtagtgttttgatacctcttacaaaaattgagataaataagctcaaaagGGAAATAT-----AGGTTTGTGCCCTACATACCACAATTACGTA-----cacttttgagctcaattatctcaatttttatcagagatatcaaaaatctgtcatcTAATAAAATC--TTTGCgatattgagataatt----aatttatcagtcggaaaattttag--atagtttttgaatggaccaggataattgagctcaaagtgcacgtaatCGGATGGCTTCTATT
i cb4.chrX              C 0 I 413
e caePb3.Scfld02_0       3405348 134 -  4147112 I
e caeJap4.Scaffold18213   540957  39 +   720316 I
e caeSp111.Scaffold582    271059 103 +   484378 I
e caeRem4.Crem_Contig15   245573  92 -  1794024 I

a score=0.000000
s ce10.chrX              2715629 358 + 17718866 atgatttttggtcagtttaactattgccagtgattttatacaatatctcactgaccccaccGAAAATTCACTTTCTTAGCTGCGCAAtagggtttccatacaggctcaaaaacgcctgtctcgcgcggcaaacctcgcaccctgtataatgcggtgccgaacccgaaaattgtcggccgcgtctaaagaaccgcacttcgcactttgtggtttaaacaccaatccttcggctttttgctgtagtgcagaaatgaggcgagaggttgacgagagaggcaggttggaggcaggcaccagatcctgaaaccgcgcctgcctcccatagaagccctaCTGCGCATTTATTTTCTGAGTAGGA
e caePb3.Scfld02_0       3405348 134 -  4147112 I
e caeJap4.Scaffold18213   540957  39 +   720316 I
e cb4.chrX              17466093 413 - 21540570 I
e caeSp111.Scaffold582    271059 103 +   484378 I
e caeRem4.Crem_Contig15   245573  92 -  1794024 I

a score=10.000000
s ce10.chrX              2715987 10 + 17718866 AATGGAAA--CA
s caeSp111.Scaffold582    271162 12 +   484378 AATGAAAGTGCT
i caeSp111.Scaffold582  I 103 C 0
e caePb3.Scfld02_0       3405348 134 -  4147112 I
e caeJap4.Scaffold18213   540957 39 +   720316 I
e cb4.chrX              17466093 413 - 21540570 I
e caeRem4.Crem_Contig15   245573 92 -  1794024 I

a score=286456.000000
s ce10.chrX              2715997 404 + 17718866 TACTGCTGCTGATCAACACTTTGATATTGCACATCTGTGACGTCTCCATCCTGTTTTCCAGATTTGATAGTGTCGACGAAGCTATTGAAGAGTGAATAGGGACGCTG----AACAATTATACAATCTG--TTTTCAAACACTCTGTATCAGGCAT-TACTTGACCA---CCGCC------ACTACTCGTTC---CCTGCATTTGTTG-------------------CA-----AGGATCCTTGTGCGCTCATCGTC------GGTGCTGCCGAGAACTGCTGTGCATGTTGTGGAATTATCGGAGTGGTTTCCTCTGGCGGTTGTGGAGTGTGGGAAGAATGTTGCGATTC------GGCAGCTTTCGCTGCAGCGACCAACGATCGTAAGCCTCCGCCAAACAATCCTTGTCCACCGACCTAAAAACTCGAAGTTAATAATAGTTT---TTAAAACAATTT
s cb4.chrX              17466506 424 - 21540570 TACTGTTGCTGATCAACACTCTGATATTGCACAGGTGTCAGGTCGCCGTCGGCTTTTCCCGATTTGATGGTGTCGACGAAACTGTTGAATAGTGAGTACGGGCGCTG----AATAATTCCAGGCTCT---TTATCAA--GCTCCATCTGAAGCAT-TACTTGACCA---CCACCAACAGAACCACTCGTTCCTGCTTGTccctgctg---------ctgctgctgctgtgAAGATGACCCTTGTACACTCATCGTC------GGCGCCGTCGAATATTGCTGTG---GGTGAGTGATAATTGGTGTCGTCTCCTCGGGCGGTTGTGGAGTGTGAGAAGAATGTTGTGATTC------GGCCGCTTTGGCAGCGGCAACCAGGGATCGTAGACCGCCTCCGAACAATCCTTGTCCACCGATCTAAAAGTTCAAAGTCAACACTGCTCTTGGGTGTAACAATT-
i cb4.chrX              I 413 C 0
s caeRem4.Crem_Contig15   245665 411 -  1794024 TACTGTTGCGGATCAACACTCTGATATTGCACAGGTGTGATGTCTCCATCAGCTTTTCCAGACTTGATGGTGTCGACGAAACTGTTGAAGAGTGAGTACGGGCGCTG----AATAATTCCAGGCTCT---TTATCAA--GCTCCATCTGAAGCAT-TACTTGACCA---CCGCC------ACCACTCGACC---CTTGTCCTTGTTGAGACGACGACGGTTGTTGCTG------------TTGCACGGTTATCGGT------GCCGCTGACGCATACTGTTGTG---GATGTGTGATAATTGGAGTTGTCTCCTCTGGCGGTTGTGGAGTATGAGAGGAATGTTGGGACTC------TGCAGCTTTCGCCGCTGCGACCAATGATCGTAGCCCTCCACCAAACAATCCTTGACCTCCgatctaaaaattcaaagtcaAAACTGCTCTC--GTGAAAATGTTG
i caeRem4.Crem_Contig15 I 92 C 0
s caeSp111.Scaffold582    271174 397 +   484378 TACTGTTGCTGATCAACATTCTGATACTGCACAGGTGTGATATCTCCATCGGCTTTTCCAGACTTGATTGTGTCGACAAAACTGTTGAACAACGAATACGGGCGCTG----AATAATTCCAGGCTCT---TTATCAA--GCTCCATCTGAAGCAT-TACTTGACCA---CCACC------ACTCGTTGCTC---CTTGTCCTTGTTG-------------------TG-----ATGATCCTTGAGCACTCATCGTC------GACGCTGTCGTATACTGTTGTG---GATGTGAAATGATTGGAGTTGTTTCCTCTGGCGGTTGCGGAGTGTGAGAGGAGTGCTGGGATTC------AGCAGCTTTCGCAGCTGCAACCAGTGATCGTAACCCTCCACCAAACAATCCTTGACCTCCGAcctaaaatttcaagttcaaaACAATTCA---GTGAGGTT-TTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3405482 398 -  4147112 TACTGTTGTGGATCAACACTCTGATATTGCACAGGTGTGATGTCTCCGTCGGCTTTTCCAGACTTGATGGTGTCGACAAAGCTGTTGAACAGTGAATACGGGCGCTG----AATAATTCCAGGCTCT---TTATCAA--GCTCCATCTGAAGCAT-TACTTGACCA---CCACC------GCTACTAGTTC---CTTGTCCTTGTTG-------------------TG-----AAGATCCTTGGACACTCATCGTC------GGCGCTGTCGCATATTGTTGTG---GATGTGAAATAATTGGAGTTGTTTCCTCTGGGGGTTGCGGGGTATGAGAGGAATGTTGGGATTC------CGCAGCTTTTGCAGCTGCGACCAATGAACGTAAACCTCCACCAAACAATCCCTGACCTCCgacctaaaatttcaaattcaaaactgtcCA---GTGAAATCATTG
i caePb3.Scfld02_0      I 134 C 0
s caeJap4.Scaffold18213   540996 415 +   720316 TGTTGCTGCTGATCAACATTTTGATATTGGACCGGAGTGATTTCACCGTCAGGTTTTCCAGATTTGATGGTATCAACAAGAGTGTTGAAAAGAGAGTGAggtcgctgaaaaaaaaattataacattTTGCTTTACAA--ACTTAA----AAATATGTACTTGTCCATGTCCAAT------ACCACTTGCAC---TTTGACCTTG----------------------TG-----ATGATCCTTGACTACTCATTTGCAATTGTGGAGCTGCTGCGTATTGCTGCGTGTGATGTGGTACAATCGGAGTAGTTTCCTCTGCTGGTTGAGGTGTGTGAGATGAATGTTGATCTGCTCCAGTTGCAGCTTTTGCGGCCGCCACAAGTGATCGTAATCCGCCAGAGAACAAGTTACCACTTGGAATCTAAAAGTTTACAATGAGATATGAACT---ATAAGAATTT--
i caeJap4.Scaffold18213 I 39 I 21

a score=2724.000000
s ce10.chrX              2716401 26 + 17718866 TCAGCTACGGTGCGCTGGTTGGTTGG----
s cb4.chrX              17466930 18 - 21540570 ---GCTACGG---------TGGTTTGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   246076 16 -  1794024 CC-GCTAGGG---------TGGTTTG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    271571 16 +   484378 CC-ACTATGG---------TGGTTTG----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3405880 16 -  4147112 AC-ACTAAAG---------TGGTATG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   541411 21 +   720316 I

a score=7007.000000
s ce10.chrX              2716427 93 + 17718866 AAACATGCT-----T-----TTCAGTCAGGAAAAATCTATAACTCTTCAAACTCATC-AAA----CAGGTGTTTCTATAGAAA-GGAAATTTCAAAGAATGGATCAAAA
s cb4.chrX              17466948 74 - 21540570 AGAcatgctatttttttttgttcaatcaGGGCAAA------------C-----TTTC-AAA----CA-GTgct------ggaagaaaaattctagaaaa------aaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   246092 74 -  1794024 ATACATGCCAGTTTT-----CTCAATCAGGgaaaa------------caaacgtttc-aaa----catgtgct------agaa-aaaagttctaaaaaa------gaga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    271587 71 +   484378 ACTCATGCT---TCT-----TTCAATCAGGGaaaa------------caaacttttc-aaa----CAGGTGGT------AGAA-AAACCGTctaatgag------aaaa
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3405896 71 -  4147112 ATACATGCTAA-CCT-----CTCAATCAGgg-aaa------------caaacttttcaaaa----ccagtGCT------AGAA-AAAC--TCtagagaa------aaaa
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18213   541432 55 +   720316 ACACATGCTTTCTTT---CGTTCGTTCAGGG-aaa------------caaa---ttc-aaattgtcaagtctt------aa----------------------------
i caeJap4.Scaffold18213 I 21 C 0

a score=-2828.000000
s ce10.chrX              2716520 31 + 17718866 TTTCAAAAAAAAAAAGTCGTT------------CTAAAAGGAA
s cb4.chrX              17467022 26 - 21540570 -tatttaggaaaaaa----gt------------ccaaaaaggA
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig15   246166 30 -  1794024 -aagcgagaaaaaactgTTGT------------CTAGATGGGA
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    271663 26 +   484378 -----caaaaatgatgttttt------------cTAGTCGGGA
i caeSp111.Scaffold582  I 5 I 2
s caeJap4.Scaffold18213   541487 41 +   720316 -ttgcaaaaaaaaaatgttctaaaGGTTTCACACTATCAGGG-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3405967 39 -  4147112 I

a score=563652.000000
s ce10.chrX              2716551 898 + 17718866  
s cb4.chrX              17467076 788 - 21540570  
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   246202 807 -  1794024  
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    271691 810 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3406006 823 -  4147112  
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18213   541528 832 +   720316  
i caeJap4.Scaffold18213 C 0 I 147

a score=63.000000
s ce10.chrX              2717449 3 + 17718866 AAT
s cb4.chrX              17467864 3 - 21540570 CAC
i cb4.chrX              C 0 I 443
s caeRem4.Crem_Contig15   247009 3 -  1794024 AAA
i caeRem4.Crem_Contig15 C 0 I 14
s caeJap4.Scaffold18213   542507 3 +   720316 AAA
i caeJap4.Scaffold18213 I 147 C 0
e caePb3.Scfld02_0       3406829 0 -  4147112 C
e caeSp111.Scaffold582    272501 0 +   484378 C

a score=718911.000000
s ce10.chrX              2717452 664 + 17718866  
s cb4.chrX              17468310 664 - 21540570  
i cb4.chrX              I 443 I 28
s caeRem4.Crem_Contig15   247026 664 -  1794024  
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582    272501 664 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3406829 664 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   542510 664 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=54.000000
s ce10.chrX              2718116 1 + 17718866 A
s caeRem4.Crem_Contig15   247690 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 28
s caeSp111.Scaffold582    273165 1 +   484378 t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3407493 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   543174 1 +   720316 A
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17468974 28 - 21540570 I

a score=-1355.000000
s ce10.chrX              2718117 2 + 17718866 AA-
s caeSp111.Scaffold582    273166 2 +   484378 aa-
i caeSp111.Scaffold582  C 0 I 31
s caePb3.Scfld02_0       3407494 2 -  4147112 tg-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   543175 2 +   720316 -AT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17468974 28 - 21540570 I
e caeRem4.Crem_Contig15   247691 28 -  1794024 I

a score=-494.000000
s ce10.chrX              2718119 4 + 17718866 -AAAA
s caePb3.Scfld02_0       3407496 4 -  4147112 -aaaa
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18213   543177 2 +   720316 TA---
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17468974 28 - 21540570 I
e caeSp111.Scaffold582    273168 31 +   484378 I
e caeRem4.Crem_Contig15   247691 28 -  1794024 I

a score=776.000000
s ce10.chrX              2718123 11 + 17718866 CGGAATTAGTT
s caeJap4.Scaffold18213   543179 10 +   720316 -GGAATTAATT
i caeJap4.Scaffold18213 C 0 I 25
e caePb3.Scfld02_0       3407500 31 -  4147112 I
e cb4.chrX              17468974 28 - 21540570 I
e caeSp111.Scaffold582    273168 31 +   484378 I
e caeRem4.Crem_Contig15   247691 28 -  1794024 I

a score=0.000000
s ce10.chrX              2718134 646 + 17718866  
e caePb3.Scfld02_0       3407500  31 -  4147112 I
e caeJap4.Scaffold18213   543189  25 +   720316 I
e cb4.chrX              17468974  28 - 21540570 I
e caeSp111.Scaffold582    273168  31 +   484378 I
e caeRem4.Crem_Contig15   247691  28 -  1794024 I

a score=382.000000
s ce10.chrX              2718780 4 + 17718866 TCTG
s caeRem4.Crem_Contig15   247719 4 -  1794024 TCTG
i caeRem4.Crem_Contig15 I 28 C 0
e caePb3.Scfld02_0       3407500 31 -  4147112 I
e caeJap4.Scaffold18213   543189 25 +   720316 I
e cb4.chrX              17468974 28 - 21540570 I
e caeSp111.Scaffold582    273168 31 +   484378 I

a score=-61.000000
s ce10.chrX              2718784 3 + 17718866 -AAA
s cb4.chrX              17469002 3 - 21540570 -AAA
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   247723 4 -  1794024 ACAC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3407500 31 -  4147112 I
e caeJap4.Scaffold18213   543189 25 +   720316 I
e caeSp111.Scaffold582    273168 31 +   484378 I

a score=450.000000
s ce10.chrX              2718787 2 + 17718866 TT
s cb4.chrX              17469005 2 - 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   247727 2 -  1794024 TA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    273199 2 +   484378 TT
i caeSp111.Scaffold582  I 31 C 0
e caePb3.Scfld02_0       3407500 31 -  4147112 I
e caeJap4.Scaffold18213   543189 25 +   720316 I

a score=-35.000000
s ce10.chrX              2718789 1 + 17718866 -A
s cb4.chrX              17469007 2 - 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   247729 2 -  1794024 AA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    273201 1 +   484378 -A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3407531 1 -  4147112 -A
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18213   543189 25 +   720316 I

a score=820003.000000
s ce10.chrX              2718790 834 + 17718866  
s cb4.chrX              17469009 817 - 21540570  
i cb4.chrX              C 0 I 1101
s caeRem4.Crem_Contig15   247731 831 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    273202 827 +   484378  
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3407532 827 -  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   543214 837 +   720316  
i caeJap4.Scaffold18213 I 25 C 0

a score=303284.000000
s ce10.chrX              2719624 652 + 17718866  
s cb4.chrX              17470927 736 - 21540570  
i cb4.chrX              I 1101 C 0
s caeRem4.Crem_Contig15   248562 674 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    274031 676 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3408361 674 -  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   544051 642 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=1039.000000
s ce10.chrX              2720276 3 + 17718866 TGT
s cb4.chrX              17471663 3 - 21540570 ttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    274707 3 +   484378 tgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3409035 3 -  4147112 Tgt
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18213   544693 3 +   720316 TTC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   249236 31 -  1794024 I

a score=-806.000000
s ce10.chrX              2720279 11 + 17718866 -ATTGATTTTTT
s cb4.chrX              17471666 10 - 21540570 --ttaatattta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    274710  9 +   484378 --ttgataTTT-
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   544696 11 +   720316 CATGAGTTATT-
i caeJap4.Scaffold18213 C 0 I 21
e caePb3.Scfld02_0       3409038 31 -  4147112 I
e caeRem4.Crem_Contig15   249236 31 -  1794024 I

a score=-690.000000
s ce10.chrX              2720290 12 + 17718866 GGTTTTTTGTAT-
s cb4.chrX              17471676 12 - 21540570 gaattgtttcaa-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    274719 12 +   484378 -AATTTGTTGAAT
i caeSp111.Scaffold582  C 0 I 11
e caePb3.Scfld02_0       3409038 31 -  4147112 I
e caeJap4.Scaffold18213   544707 21 +   720316 I
e caeRem4.Crem_Contig15   249236 31 -  1794024 I

a score=202.000000
s ce10.chrX              2720302 13 + 17718866 ATTTGCTTGAGTT
s cb4.chrX              17471688 13 - 21540570 aatttttgggatt
i cb4.chrX              C 0 I 10
e caePb3.Scfld02_0       3409038 31 -  4147112 I
e caeJap4.Scaffold18213   544707 21 +   720316 I
e caeSp111.Scaffold582    274731 11 +   484378 I
e caeRem4.Crem_Contig15   249236 31 -  1794024 I

a score=0.000000
s ce10.chrX              2720315 488 + 17718866 GTTCAAGCATAAACAAACTAAAATACTACCATAGTAGGCAAAATGTTTTCAACTAACAAAATGTTGCCAAATATTTTGGTCAATTTTGTCAAAATTTCATAACTCTGTTCTGAAAAAAATTACAGCAGCTGACATCCTGTGGGTTTGTTTTGGACTAAAATTTTATGGGGATTCCAACATTGCAACATAATAAATACAATACAACTTTAAAACTAGACGTTTTTAAGGAACGAAGTCACATTCGGAAGTGATATCCATAAAGTTTTCTACAAAATTCAATTGTAGGTCACTCAGCAAACCCAGGCTAAAACCCAACCCGCCTGGTGTCAGCTGCTGTATTTTTTTTAATCAAAACAGAGTTATATACATTTGACAAATGTTGAATACATAGAATAAGACCCAAGTATTATTTTGTTATAGAAAGTATGTTGCTAACTATTATAGTATTTAAAACATACGTGCCGACAGCGAATTGGCCGACACTGTTT
e caePb3.Scfld02_0       3409038  31 -  4147112 I
e caeJap4.Scaffold18213   544707  21 +   720316 I
e cb4.chrX              17471701  10 - 21540570 I
e caeSp111.Scaffold582    274731  11 +   484378 I
e caeRem4.Crem_Contig15   249236  31 -  1794024 I

a score=182.000000
s ce10.chrX              2720803 2 + 17718866 AT
s caeRem4.Crem_Contig15   249267 2 -  1794024 at
i caeRem4.Crem_Contig15 I 31 C 0
e caePb3.Scfld02_0       3409038 31 -  4147112 I
e caeJap4.Scaffold18213   544707 21 +   720316 I
e cb4.chrX              17471701 10 - 21540570 I
e caeSp111.Scaffold582    274731 11 +   484378 I

a score=339.000000
s ce10.chrX              2720805 3 + 17718866 ACA
s caeRem4.Crem_Contig15   249269 3 -  1794024 atg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    274742 3 +   484378 ACT
i caeSp111.Scaffold582  I 11 C 0
s caePb3.Scfld02_0       3409069 3 -  4147112 ACT
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18213   544707 21 +   720316 I
e cb4.chrX              17471701 10 - 21540570 I

a score=910.000000
s ce10.chrX              2720808 1 + 17718866 T
s cb4.chrX              17471711 1 - 21540570 T
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig15   249272 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    274745 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3409072 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   544707 21 +   720316 I

a score=308687.000000
s ce10.chrX              2720809 295 + 17718866 ACCTTTAGAAGCATTTCACATGCAAAAACTCCAGTAAAACAGTAATCCATATACTGTAGGACTTTGTTTCTCGGATTTTCTTCATCGACTGGATCTTCAGCGGCTAGAGAAACCGATGAGAGACAGATAACGGTCATGACCATCATTTCAAAGTATTTGGTGCACACGATACTGTGAATCAGAACTCGGAATGGATTAGTTGGCGAGAGAAAGAACATAGAACTGTAGGGAACCATGGGTTTTGGACCTCCAAATGGTGACTCTTCTTCTTCGCATTCTTCGTCCAAATCTGAAA-
s cb4.chrX              17471712 295 - 21540570 ACCTTCAGAAGCATTTCGCAAGCAAAAACTCCCGTGAAACAGTAATCCATATATTGCAACACTTTGTTTCTTGGATTCTCCTCATCTACTGGATCTTCAGCGGCTAGCGAGACGGAAGACAGACAAATGACAGTCATGACCATCATTTCAAAGTATTTGGTACATACAATACTGTGAATGAGAACTCGAAATGGGTTTGTTGGCGAGAGAAAGAACATTGAACTATAGGGAACCATTGGTTTGGGACCACCAAAGGGTGATTCTTCCTCTTCGCATTCTTCatccatttctgaaa-
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig15   249273 295 -  1794024 ACCTTAAGAAGCATTTCGCAAGCAAAGACACCCGTGAAGCAGTAATCCATATACTGCAAGACTTTATTTCTTGGATTTTCTTCATCAACAGGATCTTCTGCAGCAAGTGAAACCGAGGAGAGACAGATGACGGTCATGACCATCATTTCGAAGTATTTCGTGCAAACAATACTGTGAATGAGGACTCGAAATGGATTGgtgggagagagaaagaacatGGAACTGTATGGAACCATTGGTTTTGGACCACCGAATGgtgattcttcttcttcacattctTCATCcatatctggaa-
i caeRem4.Crem_Contig15 C 0 I 34
s caeSp111.Scaffold582    274746 286 +   484378 ACTTTAAGAAGCATTTCACAAGCAAATACACCCGTAAAACAGTAATCCATATACTGTAGAACTTTATTTCTTGGATTCTCTTCGTCTACTGGATCTTCTGCAGCAAGTGACACCGAAGACAGACAAATGACTGTCATCACcatcatttcgaaatatttagTACAAACGATACTGTGAATAAGAACTCGGAATGGGTTGGTTGGGGATAAGAAAAACATGGAACTGTATGGAACCATAGGTTTGGGACCACCAAACGGAGACTCCTCTTCTTCACATTCCTCATCCA----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3409073 286 -  4147112 ACTTTGAGAAGCATTTCGCAAGCAAATACACCCGTAAAACAGTAATCCATATACTGTAGCACTTTATTTCTTGGATTTTCTTCATCTACTGGATCTTCGGCAGCAAGTGATACCGAAGACAGGCAAATAACTGTCATAACCATCATCTCAAAGTATTTGGTACATACAATACTGTGAATAAGGACTCGGAATGGGTTAGTTGGTgacaagaaaaacattgaactGTATGGAACCATTGGTTTGGGACCACCAAATGgagattcttcttcttcacattcCTCGTCCA----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   544728 296 +   720316 ACTTTAAGAAGCATTTCACATGCAAAAACACCCGTGAAACAGTAATCCATGTACTGTAGAACTTTGTTTCTTGGGTTTTCTTCATCCACTGGATCTTCAGCAGCAAGAGATACGGAAGAAAGACAGATAACAGTCATGACCATCATTTCAAAGTATTTGGTACATACGACACTGTGGATGAGCACTCGAAATGGGTTGGTTGGTGATAAGAAGAACATTGAACTGTATGGAACCATTGGTTTGGGACCACCAAATGGCGACTCTTCTTCTTCGCACTCTTCATCCATTTCTGAACA
i caeJap4.Scaffold18213 I 21 C 0

a score=-409.000000
s ce10.chrX              2721104 25 + 17718866 TGAAGTTTTT-----TTTGTG---AAATTGCAG
s caeJap4.Scaffold18213   545024 33 +   720316 AGAAATTAATACCGATTTGCgcccaaacaaaaa
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3409359  0 -  4147112 C
e cb4.chrX              17472007 40 - 21540570 I
e caeSp111.Scaffold582    275032  0 +   484378 C
e caeRem4.Crem_Contig15   249568 34 -  1794024 I

a score=765637.000000
s ce10.chrX              2721129 881 + 17718866  
s cb4.chrX              17472047 883 - 21540570  
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig15   249602 875 -  1794024  
i caeRem4.Crem_Contig15 I 34 I 45
s caeSp111.Scaffold582    275032 859 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3409359 869 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   545057 964 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=484.000000
s ce10.chrX              2722010 3 + 17718866 TAT
s cb4.chrX              17472930 3 - 21540570 aat
i cb4.chrX              C 0 I 241
s caePb3.Scfld02_0       3410228 1 -  4147112 --t
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   546021 3 +   720316 tat
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    275891 0 +   484378 C
e caeRem4.Crem_Contig15   250477 45 -  1794024 I

a score=-1584.000000
s ce10.chrX              2722013 6 + 17718866 TAGAGC
s caeSp111.Scaffold582    275891 4 +   484378 --AAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410231 6 -  4147112 ggaatt
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   546024 4 +   720316 gaga--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17472933 241 - 21540570 I
e caeRem4.Crem_Contig15   250477 45 -  1794024 I

a score=-7861.000000
s ce10.chrX              2722019 26 + 17718866 --CATGAAA----TGTATACAAGAA-----TTTTGGA
s cb4.chrX              17473174 28 - 21540570 --CATGAAAGCCTTATTCATAAAAT-----TGATA--
i cb4.chrX              I 241 C 0
s caeSp111.Scaffold582    275895 24 +   484378 ---ATTGA-----TATATATTTGAC-----TGATAGA
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3410237 29 -  4147112 ---ttcaa-----catgaaaaagaCAAATGTGATGTA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   546028 23 +   720316 aaaattaa-----taaaaatatttt-----tga----
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   250477 45 -  1794024 I

a score=143698.000000
s ce10.chrX              2722045 134 + 17718866 -------ATTTACTCAGAAAGTCCGTGAACCATTGTGGTTGGCCATAGTGTTCACTGGCAACGCAGCAAGTGTTTAGAAAGACCAATGTGATGACAGACCAGTAGAAGATTTGGGTTTTCACCATGATACGGATTTGAATT
s cb4.chrX              17473202 134 - 21540570 -------ACTTACTTAAAAAATCCGTAAACCATTGTGGTTGTCCATAATGCTCACTAGCGACACAGCAAGTGTTTAAAAATACCAGTGTAATAACCGACCAGTAAAAGATTTGAGTTTTCACCATGATACgtatttgaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   250522 134 -  1794024 -------ACGTACTGAGAAAGTCGGTGAACCATTGTGGTTGACCATAATGTTCACTAGCGACGCAACACGTATTGAGAAAGACCAAAGTGATAACAGACCAGTAGAAGATTTGAGTTTTTACCATAATACGGATTTGAATT
i caeRem4.Crem_Contig15 I 45 C 0
s caeSp111.Scaffold582    275925 134 +   484378 -------ACTCACTTAGAAAATCAGTAAACCATTGTGGTTGACCATAATGTTCACTAGCTACACAACATGTATTCAGGAATACCAAAGTGATGACAGACCAGTAGAAGATTTGAGTTTTCACCATGATAcgaatttgaatt
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3410272 134 -  4147112 -------ACTCACTAAGAAAGTCAGTGAACCATTGTGGCTGACCATAATGCTCACTAGCAACGCAACACGTATTTAGAAATACCAACGTAATGACAGACCAGTAgaatatttgagtttttacCATGATACGAATTTGAAtt
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   546051 141 +   720316 aaaaaaatctcactcaaaaaatCCGTAAACCATTGTGGTTGACCATAATGTTCACTCGCTACGCAACAGGTGTTCAAAAATACCAAAGTGATGACAGACCAGTAAAATATCTGTGTTTTCACCATGATACGGATCTGAATT
i caeJap4.Scaffold18213 C 0 C 0

a score=-6910.000000
s ce10.chrX              2722179 13 + 17718866 C-T-GAAAGAATTT-------A
s cb4.chrX              17473336 12 - 21540570 c-t-gaaaaattca--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   250656 13 -  1794024 C-TAGAAATAATTA--------
i caeRem4.Crem_Contig15 C 0 I 24
s caeSp111.Scaffold582    276059 15 +   484378 c-t-gaaacgGAGG----TAG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410406 20 -  4147112 ctt-aaaattgaattttcttg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192  0 +   720316 C

a score=1638.000000
s ce10.chrX              2722192 3 + 17718866 AAA
s cb4.chrX              17473348 3 - 21540570 aaa
i cb4.chrX              C 0 I 31
s caeSp111.Scaffold582    276074 3 +   484378 AAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410426 3 -  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192 0 +   720316 C
e caeRem4.Crem_Contig15   250669 24 -  1794024 I

a score=-407.000000
s ce10.chrX              2722195 10 + 17718866 AGTTTGCTTT
s caeSp111.Scaffold582    276077  7 +   484378 GTTTTCG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410429 10 -  4147112 gttttgtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192  0 +   720316 C
e cb4.chrX              17473351 31 - 21540570 I
e caeRem4.Crem_Contig15   250669 24 -  1794024 I

a score=-15.000000
s ce10.chrX              2722205 23 + 17718866 TTTACATGATTTCTGAGTTTGAA
s caeSp111.Scaffold582    276084 18 +   484378 -----ATTGATTCACAGAATAAA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3410439  0 -  4147112 C
e caeJap4.Scaffold18213   546192  0 +   720316 C
e cb4.chrX              17473351 31 - 21540570 I
e caeRem4.Crem_Contig15   250669 24 -  1794024 I

a score=0.000000
s ce10.chrX              2722228 394 + 17718866 GTAATTTATTCTTTCATACATTGTGGTCAGGGGTgtacggcaaatttcaaaaaaaaagagatttgtcgaattggatagcctattcaagttttgcaactttgcgcacataccaaaaattgaccaattaaaattaaaccgaaactattgattttgttccagaaaatctatcgcaataaaataataaatattgagttattttgaactttttgcagggagaccaaacggatctctccagatacaaacgtgcgctaagaattcagtaattttggtactttaaagatattacaaaatttcaaattttCACTTTACTCTGCTATTGCAGGTAGAAGAGGCCTGCGTGATGTTACCCACCTAAGCTGGAAATTTATATACTCAAAAATAGTAAAACACTATT
e caePb3.Scfld02_0       3410439   0 -  4147112 C
e caeJap4.Scaffold18213   546192   0 +   720316 C
e cb4.chrX              17473351  31 - 21540570 I
e caeSp111.Scaffold582    276102   0 +   484378 C
e caeRem4.Crem_Contig15   250669  24 -  1794024 I

a score=91.000000
s ce10.chrX              2722622 1 + 17718866 A
s caeRem4.Crem_Contig15   250693 1 -  1794024 A
i caeRem4.Crem_Contig15 I 24 C 0
e caePb3.Scfld02_0       3410439 0 -  4147112 C
e caeJap4.Scaffold18213   546192 0 +   720316 C
e cb4.chrX              17473351 31 - 21540570 I
e caeSp111.Scaffold582    276102 0 +   484378 C

a score=-1149.000000
s ce10.chrX              2722623 7 + 17718866 TTTATTC-----
s caeRem4.Crem_Contig15   250694 7 -  1794024 -----TGTAAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3410439 7 -  4147112 cttagtG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192 0 +   720316 C
e cb4.chrX              17473351 31 - 21540570 I
e caeSp111.Scaffold582    276102 0 +   484378 C

a score=-989.000000
s ce10.chrX              2722630 2 + 17718866 TT-
s caeRem4.Crem_Contig15   250701 2 -  1794024 -TA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276102 2 +   484378 TT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410446 2 -  4147112 AT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192 0 +   720316 C
e cb4.chrX              17473351 31 - 21540570 I

a score=1910.000000
s ce10.chrX              2722632 2 + 17718866 AC
s cb4.chrX              17473382 2 - 21540570 ac
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig15   250703 2 -  1794024 AC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276104 2 +   484378 AC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410448 2 -  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546192 0 +   720316 C

a score=108277.000000
s ce10.chrX              2722634 236 + 17718866 CTCAGTTGTTTGATGAATTTTCCAACTGAATGGCAACATCCTCGTTTCTTACGTTCTGCTGAAAT-TGAAAAGTTACTAGAATG---------------CCCCACAAA-----CA-ACTGTCTACCC--GGACA-------ATC---AAACGATTC--CGGGTAGACAG------AAGAAATAGTTAGTGAGTCAAAAACAGCTTGAAACACTTCACCTCAAACGACATGCCTTTGAA--AAGAAAAGATGAAAAATCACTCAACCACACT-----GCAAAAATC
s cb4.chrX              17473384 213 - 21540570 CTCAATTGTTTAATAAATTTTCCTAACGAATGACAAcatcctctcttttttctctcagctgaaaattatacAATTATCTCAATG------------------TACAAA-----CACAACGTCTATtc--gaaaaaacaatcaaa---aaacgtttttacgAATAGACA--------TGAAAGAGG---------AAAAACAGCTTGAAACATTTCACTTCAAACGACATGCCTTGGAA--AG--aaacttgaa-----------------------gaaaaaacc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   250705 237 -  1794024 CTTAATTGCTTGATAAACTTTCCAACAGAGTGACAGCATCCTCTTTTCTTTcgatcggctgaaaa-tgcaaaaatatttCACTG------------------AACATATCATTCAGAATgtctattc--gaaaa-------aaa---aaacttt----cgaatAGACAA------GTGAGAAAAG-----AGTCAAAAACAGCTTGAAACACTTCACCTCAAACGACATGCCTTGATA--AggaaagattgaaaaattactgaatCATAATGCAATGAAAAGTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276106 235 +   484378 CTCAATTGCTTGATAAATTTTCCTAATGAGTGGCAacatcctcttttctttcgttcagctgaaaa-atcaCAATTATAACACTG----------------AAAACATG-----CAAATTGTCTATCC--GAACA-------AAGGAAAACTGTT----CGAATAGACAAAAACGGGTGA-AAAGA------GTCAAAAACAGCATGAAACACTTCACCTCAAACGACATGccttgaat--agaaaaagtt-gaaaatcaCTCATTAACACT-----GCaaaaatc
i caeSp111.Scaffold582  C 0 I 63
s caePb3.Scfld02_0       3410450 227 -  4147112 CTTAATTGTTTGATAAATTTTCCTAGCGAATGACAGCATCCTCTTTTCTTTCGTTCGGCTGAAAA-TCCATTGTTGTTTCacta--------------ttcaaaca-a-----aaaattgtctattc--gaatc-------aaa-------att----cgaataaacAA------GTGAGAAAAG------GTTAAAAACAGCTTGAAACACTTCACCTCAAACGACATGCcttgaataaagaaaaagttagaaaatcaCTGAATCGCACT-----GCAAGAACc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   546192 233 +   720316 CTCAGCTGTTTGATGAACTTTCCAAGCGAGTGGCAACATCCTCTTTTCTTGCGTTCAGCtaaaaa-ttaacaattattaaataaaaaggaagcagggtgcaaaaaatg-----caaaacgaCTTGTCTGGAACA-------TTC---AAAGTTC----CAGAAAAGCAGA-----TTCAGAAAGA------GTTCAAACCAGCTTGAAACACTTCACTTCAAACGACATGCCTTGCaa--ag--aaacgtgaaaaa-----------cgct-----gcaaaaaa-
i caeJap4.Scaffold18213 C 0 C 0

a score=-3759.000000
s ce10.chrX              2722870 12 + 17718866 TGTTTAAAGAA--T
s cb4.chrX              17473597 11 - 21540570 TGATTGCAGAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   250942  7 -  1794024 TGATTTC-------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3410677 12 -  4147112 -agttgaaaaagt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   546425 11 +   720316 --gttggaaaaac-
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    276341 63 +   484378 I

a score=-8373.000000
s ce10.chrX              2722882 34 + 17718866 ACC--ATAAAATCTAGCTATATAATTTTCAAAAGCG
s cb4.chrX              17473608 26 - 21540570 --------TAATC--ACGCTGGATTCTCAGAAAAAG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   250949 24 -  1794024 --------TAGTCT-ACAC---ATTCTCgaaaagcg
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    276404  9 +   484378 -----------------------atcatgaaa----
i caeSp111.Scaffold582  I 63 C 0
s caePb3.Scfld02_0       3410689 19 -  4147112 -----------------gaaaaaatctcGAAGAGCG
i caePb3.Scfld02_0      C 0 I 184
s caeJap4.Scaffold18213   546436 36 +   720316 gCCTGGTATAATCAGAGAGAACATTCTCGAAAAGCG
i caeJap4.Scaffold18213 C 0 C 0

a score=-40471.000000
s ce10.chrX              2722916 146 + 17718866 GAAA---GTTTCA-------------GTAGTTTAAAAA--CA--TGCTGAAGA--------------GTGCT-------------AGAAATTTGTTTTAAAAG------CTGAAACTAGTT---TTGGGAAATGTTGATAAAACGTTAAAGTTGAAGA-------AGGATGCTAAATA--TGAATAAACAAACTTGATAGTAAACTTGAAG
s cb4.chrX              17473636 152 - 21540570 AGAA---TCTCCA---------------------GAAT--CA--TGCTGAAAAGTTGGTATGTGTGGGTGCTGTGATG-------GGACCACACTTCTTC--------Tatgttagaaatt---ttaaaactatcTAGTTTAGAAGTCGA-CAGTAGA-------TCATAGAAAGGTA--AGAAGAAACAAACTTGC---TCCATGGAAGA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   250975 171 -  1794024 aaaa---atcacaagaagaaaaaga-gacgttTTGAAC--CA--TGCTAAAAAGT------------GTGCTGTGATGAT----AGGACAAAACTTCTGaaag-----tattcaaaaagtttgattaAAACACTGTGAGATCAGTACAAA-TAGAAGA-------TCattaaaaagaaatagaagaaacaaACTTGC---TCCAATTGTGT
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    276413 135 +   484378 -aaa---gtttca---------------------aaaaccca--tgc-taaaatT------------GTGCTCTCGCGTTTGGACAGACAAACCTTCTTAAGA------ATTCAAATGACA---AT-------AACAGTTTGTGATTAAgatagagg--------------aaaaagaagaaaaaggacaaACTTGC---TCCAGTTG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3410892 142 -  4147112 aaaattggtttca---------------------aaaa--ca--tgcTTAAAGTA------------GTGCT------------AGGACGATACTTCTAAAAG-TTATCATTATTGTGATA---ATGAGTAAAGATAGATTGAAAACAAG-TAGAAG-----------ttaaaaagaaatagaagaaacaaACTTGC---TCCAGTTGTG-
i caePb3.Scfld02_0      I 184 C 0
s caeJap4.Scaffold18213   546472 127 +   720316 ------------------AGATAGATGAACATTGAAAT--CAATCACTGCAAAAC------------GTACA---------------------ATTCTGTGAAATTACTATGTATAAAGTT---TT---------TGGCTTGAAATCATG-CGAAAAAAGTGATTTGGTgcaaaattgaaagaaaatttaaaa------------------
i caeJap4.Scaffold18213 C 0 I 91

a score=16149.000000
s ce10.chrX              2723062 86 + 17718866 TGTAAAGAAA------GTCGAAAAAACATCAGCGTGCCGAATGG--------ATCTGAAT-----CACCGCAAA--AAAC-TGGCA--A--TCATGCAT--------tcaatcaatcaat
s cb4.chrX              17473788 84 - 21540570 TGCaaaaaaa-GTGTCAGTGT--------CTTTGTGCCAAACGA--------TTCTGTAGGTTAACACCGCAAG--AAAAGACGCGATA--TCATGCAA--------------AAgata-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   251146 97 -  1794024 TGTAAGAAAACGTGTCGTTTTACAAAC--CGACGTGCCGAACAA--------CTCTGTAT-----CACCGCAAG--AAAA-ACGCG--A--TCATGCAATCAATCAGTCAATCAATGta-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276548 96 +   484378 ----AGAAAA-GTGTCGTCAAACAAAC--CAACGTGCCGgatactgttttttttctgtat-----caCCGCAAGGAAAGA-ACGCG--ATCTCATGCAA--------TCAAGCAATCaa-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3411034 92 -  4147112 TGAAAGAAAT-GTGTCGTCAAACAGAC--CAACGTGCC----ATTTCTATGTTTCTGTAT-----CACCGCAAG--AAAA-CTGCG--A--TCAtgcaa--------tcaatcaatcaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   546599 91 +   720316 I

a score=275094.000000
s ce10.chrX              2723148 306 + 17718866 caatcactcaa--------------tcaaAAACCTCAAAT-AACTGGT-CAGTGTAATTTCAAAAAGGCATGCGAATGAA--AG--AAAATGCTCTTGCCGAATTCGTCTTCTACTGTTCCACCTTCGTCGACGTATTCCTCTTCCATTTCGTCTTCGTCCTCCTCAAAGTCCTCTTCAGTTTCTGTAGACTGCTGTTTTGAGGCTTGTTTTAACTTTTTATTAGCGGCTCGCCGTCTGGCTTCCATGATCGCTGCTTTTTCTTCTTCAGTTGTTCGATCTTCTTTTAGAATCACCTCTTCGGCTGTTAAAATCCATTCTAGATAT
s cb4.chrX              17473872 292 - 21540570 --------------------------aaaatctttaaaaagaaCTCGT---GTTTCAA----AAAGGACATGCGAATGAATTGG-TAAAATGATCTTGCCGAATTCGTCCTCCACTGCTCCACCTTCGTCGACGTATTCCTCTTCCATCTCATCCTcatcttcttcaaaatcttcttCAGTCTCTGTGGATTGTTGTTTGGATGCTTGTTTGAGCTTCTTGTTGGCTGCTCGGCGCCGAGCTTCCATGATAGCCGCTTTCTCCTCTTCAGTGGTACGGTCTTCCTTCAAAATCACTTCTTCGGCAGTCAGAATCCATTCAAGATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   251243 294 -  1794024 --------------------------aagaaatctcaaaa-aacttgt-caGTGTTGAATT-AAAAGGCATGCGAATGAA--AG-TAAAATGTCCTTGCCGAATTCGTCCTCCACTGCTCCACCTTCGTCGACGTAttcttcttccatctcgtcttcatcttcttcgaaatcttcttctgtttctgttGATTGTTGTTTTGAGGcctgtttcaatttcttgttgGCAGCTCGACGTCGTGCTTCCATGATTGCTGCTTTCTCCTCTTCGGTGGTACGATCCTCTTTCAAGATAACTTCTTCAGCAGTCAAGATCCATTCCAAATat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276644 295 +   484378 --------------------------agaaaatctcaaaa-aactggt-CAGTGTTGGATTCAAAAGGCATGCGAATGAA--AG-TAAAATGATCTTGCCGAATTCGTCCTCCACTGCTCCACCTTCGTCCACgtattcttcttccatctcATCTTCGTCCTCCTCAAAGTCTTCTTCGGTTTCTGTTGATTGTTGTTTTGAGGCTTGtttcaactttttgtttGCAGCTCGACGTCTTGCTTCCATGATTGctgctttctcttcttctgtagTACGgtcttctttcagaataacTTCTTCGGCTGTTAAGATCCATTCGAGATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3411126 295 -  4147112 --------------------------aaaaatcttcaaaa-aactggt-CAGTGTTGGATT-AAAAGGCATGCGAATGAA--AGATAAAATGTCCTTGCCGAATTCATCCTCCACTGCTCCACCTTCGTCAACGtattcttcttccatctcgTCCTCGTCTTCCTCgaaatcttcttctgtttcagttGACTGTTGTTTCGAAGcttgtttcagtttcttgTTAGCAGCTCTACGCCTAGCTTCCATGATTGctgctttttcctcttctgtgGTACGATCTTCCTTAAGAATAACTTCTTCGGCTGTCAAAATCCATTCGAGATAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   546690 319 +   720316 caaaaattcaaaccatgcaaatgagaaaaaagtttgaaaa-tactATTTCAGTGTTCTCTT---AGGGCATGCgaatgaa--ag-aaaaaggttCTTGCCGAATTCGTCCTCCACGGCTCCACCTTCGTCCACATATTCCTCTTCCATTTCGTCTTCGTCTTCCTCGAAATCTTCCTCAGTTTCAGTGGATTGCTGTTTCGTGGCCTGTTTCAGCTTCTTGTTCGCTGCTCTTCTACGGGCTTCCATTATAGCTGCCTTCTCTTCTTCTGTGGTACGATCCTCTTTCAGAATCACTTCTTCAGCAGTCAGAATCCATTCCAGGTAT
i caeJap4.Scaffold18213 I 91 C 0

a score=2607.000000
s ce10.chrX              2723454 5 + 17718866 CTGAA
s cb4.chrX              17474164 5 - 21540570 CTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   251537 5 -  1794024 cttca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276939 5 +   484378 CTAAA
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3411421 5 -  4147112 Ctaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   547009 0 +   720316 C

a score=546.000000
s ce10.chrX              2723459 1 + 17718866 A
s cb4.chrX              17474169 1 - 21540570 A
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig15   251542 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3411426 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   547009 0 +   720316 C
e caeSp111.Scaffold582    276944 26 +   484378 I

a score=273.000000
s ce10.chrX              2723460 1 + 17718866 A
s caeRem4.Crem_Contig15   251543 1 -  1794024 a
i caeRem4.Crem_Contig15 C 0 I 37
s caePb3.Scfld02_0       3411427 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   547009 0 +   720316 C
e cb4.chrX              17474170 30 - 21540570 I
e caeSp111.Scaffold582    276944 26 +   484378 I

a score=311.000000
s ce10.chrX              2723461 6 + 17718866 ACGAAA
s caePb3.Scfld02_0       3411428 6 -  4147112 atgaga
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18213   547009 0 +   720316 C
e cb4.chrX              17474170 30 - 21540570 I
e caeSp111.Scaffold582    276944 26 +   484378 I
e caeRem4.Crem_Contig15   251544 37 -  1794024 I

a score=0.000000
s ce10.chrX              2723467 587 + 17718866  
e caePb3.Scfld02_0       3411434  31 -  4147112 I
e caeJap4.Scaffold18213   547009   0 +   720316 C
e cb4.chrX              17474170  30 - 21540570 I
e caeSp111.Scaffold582    276944  26 +   484378 I
e caeRem4.Crem_Contig15   251544  37 -  1794024 I

a score=516.000000
s ce10.chrX              2724054 14 + 17718866 GAAAACAATCCGCC
s caeSp111.Scaffold582    276970 14 +   484378 gaaaaaaaactgtt
i caeSp111.Scaffold582  I 26 C 0
e caePb3.Scfld02_0       3411434 31 -  4147112 I
e caeJap4.Scaffold18213   547009  0 +   720316 C
e cb4.chrX              17474170 30 - 21540570 I
e caeRem4.Crem_Contig15   251544 37 -  1794024 I

a score=4543.000000
s ce10.chrX              2724068 7 + 17718866 AACTCAC
s cb4.chrX              17474200 7 - 21540570 AACATAC
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig15   251581 7 -  1794024 AACATAC
i caeRem4.Crem_Contig15 I 37 C 0
s caeSp111.Scaffold582    276984 7 +   484378 aactCAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3411465 7 -  4147112 AACATAC
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18213   547009 0 +   720316 C

a score=690138.000000
s ce10.chrX              2724075 875 + 17718866  
s cb4.chrX              17474207 845 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   251588 834 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    276991 778 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3411472 783 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   547009 858 +   720316  
i caeJap4.Scaffold18213 C 0 I 41

a score=910.000000
s ce10.chrX              2724950 1 + 17718866 A
s cb4.chrX              17475052 1 - 21540570 a
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   252422 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 I 33
s caeSp111.Scaffold582    277769 1 +   484378 A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3412255 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   547867 41 +   720316 I

a score=563.000000
s ce10.chrX              2724951 10 + 17718866 AGTTCCAAGT
s cb4.chrX              17475059 10 - 21540570 aattttcaat
i cb4.chrX              I 6 I 974
s caeSp111.Scaffold582    277770  8 +   484378 --ATTTAAGT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3412256  0 -  4147112 C
e caeJap4.Scaffold18213   547867 41 +   720316 I
e caeRem4.Crem_Contig15   252423 33 -  1794024 I

a score=0.000000
s ce10.chrX              2724961 9 + 17718866 AAACATGCA
e caePb3.Scfld02_0       3412256 0 -  4147112 C
e caeJap4.Scaffold18213   547867 41 +   720316 I
e cb4.chrX              17475069 974 - 21540570 I
e caeSp111.Scaffold582    277778 0 +   484378 C
e caeRem4.Crem_Contig15   252423 33 -  1794024 I

a score=-1257.000000
s ce10.chrX              2724970 180 + 17718866 TTGTCGGTCCATATTACTAACTTGAGTTGTTTTAAAAAAAATACTATTATAGTTAGAATTTTTTTTTCAACTAACAAAATGTTGCCAATAATTTCCTCTACATTTATAACGTTAACAAAATTATATAACTCCTTTTCGAGAAAAGTTACAGCAGCTGACATCCGGCGGGTCATTTTTTTA
s caePb3.Scfld02_0       3412256  79 -  4147112 ----------atatttc-------------tttaaaaaaaacagta--------------tttctTACGA-------------------AATTTTCTAT------------------------CATAATTACTTTAGAAGTAGACTCGCA---------------------AATctttta
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18213   547867  41 +   720316 I
e cb4.chrX              17475069 974 - 21540570 I
e caeSp111.Scaffold582    277778   0 +   484378 C
e caeRem4.Crem_Contig15   252423  33 -  1794024 I

a score=0.000000
s ce10.chrX              2725150 247 + 17718866 AAATAAAAATGTCTAAGTGCCTCATAACTATCATGAAAACACCTAGTTTCAAGTTTGTGGGTCATTTAGCAATTCTTAAAAAAAAACAGGCCCACCGGATGTCAGCAGCTGTTTTTTCAAAAAGAAGCTATATAACTTTGACGAAATTGAATGTGTAGAAAAATTATCGACAACGTTTTGTTAGTTGAAAATGTTTTTTTCTAACTATCATAATAATATACCAAAACCGAATAGAATATTCGCCGGC
e caePb3.Scfld02_0       3412335   7 -  4147112 I
e caeJap4.Scaffold18213   547867  41 +   720316 I
e cb4.chrX              17475069 974 - 21540570 I
e caeSp111.Scaffold582    277778   0 +   484378 C
e caeRem4.Crem_Contig15   252423  33 -  1794024 I

a score=237.000000
s ce10.chrX              2725397 9 + 17718866 ATTTTCCAA
s cb4.chrX              17476043 9 - 21540570 ATCTTTGAG
i cb4.chrX              I 974 C 0
e caePb3.Scfld02_0       3412335 7 -  4147112 I
e caeJap4.Scaffold18213   547867 41 +   720316 I
e caeSp111.Scaffold582    277778 0 +   484378 C
e caeRem4.Crem_Contig15   252423 33 -  1794024 I

a score=583.000000
s ce10.chrX              2725406 6 + 17718866 AATTCC
s cb4.chrX              17476052 6 - 21540570 AATCAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    277778 6 +   484378 AATTCA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3412335 7 -  4147112 I
e caeJap4.Scaffold18213   547867 41 +   720316 I
e caeRem4.Crem_Contig15   252423 33 -  1794024 I

a score=38.000000
s ce10.chrX              2725412 14 + 17718866 AAAATTTTCCAAAA
s cb4.chrX              17476058 13 - 21540570 -AATAGTCTCCGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    277784 13 +   484378 -TATTCTTTCTGAT
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3412342 14 -  4147112 aaacttttgcagTG
i caePb3.Scfld02_0      I 7 I 1
e caeJap4.Scaffold18213   547867 41 +   720316 I
e caeRem4.Crem_Contig15   252423 33 -  1794024 I

a score=111747.000000
s ce10.chrX              2725426 113 + 17718866 AAT--CTCACCCGGAAACTACTACAATAAAATCCATGATATTCCATCCTGATCGAAGATATGATCCTTTATGTAATGCAAAACCAAACGCTATGACTTTCAAAACACATTCTAAA
s cb4.chrX              17476071 110 - 21540570 -----CTCACCCAGAAACGACTACAATGAAGTCCATGATATTCCATCCTGATCGTAGATATGAGCCTTTATGGAAGGCGAATCCGAAAGCAATCACTTTTAAAATGCattctaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   252456 113 -  1794024 AAT--CTCACCCAGATACAACTACAATGAAATCCATAATGTTCCATCCTGATCGTAAATATGAGCCCTTATGAAGGACAAATCCGAAAGCTATGATTTTTAATACACActctaaa
i caeRem4.Crem_Contig15 I 33 C 0
s caeSp111.Scaffold582    277798 114 +   484378 AAT-ATTTACCCGGAAACCACGACAATGAAATCCATGATATTCCATCCTGATCGAAGGTATGAGCCTTTATGAAATGCAAATCCGAAAGCtatgatttttaaaacacattctaaa
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3412357 115 -  4147112 ACTGACTTACCCGGATACAACGACAATGAAATCCATGATATTCCATCCTGAGCGAAGATATGATCCTTTATGTAATACAAATCCAAAAGCgataatttttaaaacacattctaaa
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18213   547908 113 +   720316 AAT--CATACCCAGAAACTACTACAACAAAATCCATAGCGTTCCATCCTGATCGGAGATATGAGCCTTTATGTAGTACAAAACCAAAAGCTATAACTTTTAAAGCACAttctaaa
i caeJap4.Scaffold18213 I 41 C 0

a score=1000.000000
s ce10.chrX              2725539 1 + 17718866 C
s cb4.chrX              17476181 1 - 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   252569 1 -  1794024 c
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    277912 1 +   484378 c
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   548021 1 +   720316 c
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3412472 1 -  4147112 I

a score=268830.000000
s ce10.chrX              2725540 445 + 17718866  
s cb4.chrX              17476182 470 - 21540570  
i cb4.chrX              C 0 I 464
s caeRem4.Crem_Contig15   252570 503 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    277913 540 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3412473 529 -  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   548022 605 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-582.000000
s ce10.chrX              2725985 5 + 17718866 ATCTT
s caeRem4.Crem_Contig15   253073 3 -  1794024 gtt--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    278453 5 +   484378 Gtcat
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   548627 5 +   720316 ATTTT
i caeJap4.Scaffold18213 C 0 I 2405
e caePb3.Scfld02_0       3413002 0 -  4147112 C
e cb4.chrX              17476652 464 - 21540570 I

a score=12247.000000
s ce10.chrX              2725990 88 + 17718866 ACATTAGGCTGTTTGCAAATTGCGAAAAATCCTCCC----GACTTCGTTTCTAGAATTTACTCGCATGATTCTAGTTGGTCACGCAAACTTT
s caeRem4.Crem_Contig15   253076 78 -  1794024 ---ttccctttttgtccaaaattgcaaaattctCTTCGAAGTCTTTCCT-----------ATCTGATTATTCTTGTTTGTCACGCAAACTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    278458 78 +   484378 tcttccttttcttttccaattttggaaaacttccct----atttctcttt----------ctttgatGATTCTAGTTTGTCACGCAAAGTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3413002 73 -  4147112 ---tcccttcttcttccaaatttgcaaaatttcacC----ATTTTCCCT------------TTTGATGATTTTAGTTTGGCACGCAAAGTTT
i caePb3.Scfld02_0      C 0 I 340
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I

a score=1107.000000
s ce10.chrX              2726078 16 + 17718866 --------TTTGCGAAGAAAAAAA
s caeRem4.Crem_Contig15   253154 24 -  1794024 GGTTTGAAATTGGGGAGAAAGAAA
i caeRem4.Crem_Contig15 C 0 I 379
s caeSp111.Scaffold582    278536 20 +   484378 ----GGGAATTGCGAAAAGTGAGA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3413075 340 -  4147112 I
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I

a score=205.000000
s ce10.chrX              2726094 79 + 17718866 ACTTGAATAATATGGCAAAAGAA---GATAGTGCATGTAGGCTGGATTAGCCCTATAAAATTTAAGATTAT-GGTTCCACAAA
s caeSp111.Scaffold582    278556 61 +   484378 AAGTGCA------GGCAATAAAATTGGTTGGTCCATGTCG----------------AAAATCTGGGAACCTGGGTTCCACGAA
i caeSp111.Scaffold582  C 0 I 200
e caePb3.Scfld02_0       3413075 340 -  4147112 I
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I
e caeRem4.Crem_Contig15   253178 379 -  1794024 I

a score=0.000000
s ce10.chrX              2726173 728 + 17718866  
e caePb3.Scfld02_0       3413075 340 -  4147112 I
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I
e caeSp111.Scaffold582    278617 200 +   484378 I
e caeRem4.Crem_Contig15   253178 379 -  1794024 I

a score=3402.000000
s ce10.chrX              2726901 19 + 17718866 CTCAAAATAGGGTGAAAAC
s caeRem4.Crem_Contig15   253557 19 -  1794024 CCCATAATgggatgaaaag
i caeRem4.Crem_Contig15 I 379 C 0
s caeSp111.Scaffold582    278817 19 +   484378 CCCATAATGGggtgaagaa
i caeSp111.Scaffold582  I 200 I 3
e caePb3.Scfld02_0       3413075 340 -  4147112 I
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I

a score=5535.000000
s ce10.chrX              2726920 36 + 17718866 --AATGAAAAGAAGGAAAA---ACGGAAACGCACATCTCTA-----------
s caeRem4.Crem_Contig15   253576 48 -  1794024 aaaatggaaagagaaagGGGAATGAGATGCGCACATCCCTCTTCT----TCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    278839 46 +   484378 --aggggaaagagaaaga----agagacgCGCACATCCCTCTTCTTCCGTCA
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3413415 43 -  4147112 --agtgaaaagagaaagag---aaagatgcGCATACATTTCTTAT----TCA
i caePb3.Scfld02_0      I 340 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17476652 464 - 21540570 I

a score=36479.000000
s ce10.chrX              2726956 132 + 17718866 GCTCATTCTCCCT----------TCATACACTCA-TTTGGGAAATGTTTCCTTTCGTAG--GGAGAGCTTTCTGTGAAAGAAGATATA---------TGTGAATAAATGCTCTACTATGCTCAAATACATTTCTTCATTGCGAAATGAATCTCA
s cb4.chrX              17477116 119 - 21540570 gCTCATTC---TTCTTCTAGAGCTCATCCCCTTGCGCTGGAAAATGTTGCCTTTCAAAA-TCCTTCGTCTGTTTTGAAAGAAGATATA---------T---AATGAAGG---------AGTC----------CTTCATTGCGAAATGAATCTCA
i cb4.chrX              I 464 I 872
s caeRem4.Crem_Contig15   253624 115 -  1794024 GCTCATCC---CT----------TCGGTCTCTTTCG--AGAAAATGTTGCTTTTCAAAA-----TAGCATTCTGTGAAAGAAGATATA---------TGTGAATGAAGAGCTTTCTTCACTC----------CTTCATTTCTAAATGAATCTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    278885 134 +   484378 GCTCATCC---TT----------TCATACTCTTA-G--AG-AAATGttgctttttcaaaagcGTGAGCATTCTATGTAAGAAGATATATATGTATATTGTGAATGAAGCGCTTTCTTCACTCGATTCCA---ATACATTGCAAAATGAATCTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3413458 129 -  4147112 GCTCATCCCTTTT----------TCATACTCTTA-G--AGAAAATGttgctttttgaaaagcgTGAGCTTTCTGTGAAAGAAGATATA---------TGTGAATGAAGTGCTTTCCTTACTCGATTCCG---TTACATTGGCAAATGAATCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I

a score=3243.000000
s ce10.chrX              2727088 18 + 17718866 GAGTA-GGGTGAAGACGGT
s caeRem4.Crem_Contig15   253739 18 -  1794024 GAGCA-CGGAAAGGACGat
i caeRem4.Crem_Contig15 C 0 I 386
s caeSp111.Scaffold582    279019 19 +   484378 GAGTAcgaaagaggaaaat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3413587 18 -  4147112 GAGTA-GGAAGAAAGCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17477235 872 - 21540570 I

a score=2650.000000
s ce10.chrX              2727106 77 + 17718866 GTGTAGGA---------GT------GCGCACGTGATGGTTGGGGGGGGGGGGGGGAATGTGTTAAGGTATTGAAACTAGATACA--CGGGATTG
s caeSp111.Scaffold582    279038 62 +   484378 gaatagat---------GTCGTCGAACACACGTGAT---------------GCGGAAAA------ACGATTGAAACTAGATATG--CGAGATTG
i caeSp111.Scaffold582  C 0 I 246
s caePb3.Scfld02_0       3413605 73 -  4147112 GGAAAGATATGGACATAGTGGTTGGGCACACgtaat---------------gaaaaatg------gatattgAAATTAGATACGACAGAGATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17477235 872 - 21540570 I
e caeRem4.Crem_Contig15   253757 386 -  1794024 I

a score=-5497.000000
s ce10.chrX              2727183 487 + 17718866 CGTGAACAATTTTTGATTATCGATTAGTGTTTTTTTTTCTATGCTGTCATAGtttaattaatttgtatattaataattttGAAAAATGTATGCTGTAAGAAGAAAATGTATTTGGCTTCTGCAAAAAAAATAGCTG--TCAAATTG----TTAAAAAGCACT---TCTATAATGCCAAAACGACCAACTAAAATTACTATTATGTTTAGTGGTTTacgtggtaccatgctgtcccatctcggttcgatctacaaaa--aattcgggaattttttacccaaaaatatgtgacgtcagcacgttcttaaccacacgaaatc--agttgagaactctgcgtctcttctcccgcatttttgtagatctgcgtagatcaagccgaaatgagacattctgacactacgtgGTGGTTGTAATGCCAATTTCCCTACAACATAAG---ATTTAACAAAAATTTTCGATTTTTCCGAGTACGTGAATTCATTTGCCCGAATCTCGAACTGAA
s caePb3.Scfld02_0       3413678 335 -  4147112 TTCAAATAGATACTG------------------------TAGGCT-----------------TTGCGTGACGGAAATTTTT--------------tacatagaaaatgaa--------atgcaGACAAAAACACTGACCCAAGATGGAACTTCAGAAACCCTGATTATTTGAT---------ATGAACGGAAGTTTCGA----ATTCAAGGTTTTCAGTA----CATGCTTTTCGAT---GATGTGATTACCCAGACTGTTTCGAGATCCCCTTCTCCATAGTAATAAGA-ATAGGAACAATTCATCCCACTCAGAATCCAAATCCAGTATCTTGTATCTCGTGTCCC-----------------------------------------TTCTAACCGAccg-----------attccaatttttc---------agttcatttagCAAGCATATCAG-------TAGGCATGTG-------TGGctcgtttct---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17477235 872 - 21540570 I
e caeSp111.Scaffold582    279100 246 +   484378 I
e caeRem4.Crem_Contig15   253757 386 -  1794024 I

a score=11791.000000
s ce10.chrX              2727670 82 + 17718866 TTTCTCCATTT---TTGCCTTGTTTTTTATCATTTTG-TGTTTTCGAGGAGCGCTTCGTCCCAGATTTTTTGACCAAAAACGCCC---G
s caeRem4.Crem_Contig15   254143 75 -  1794024 tctttcccttt---tcgttcttttttttctctttcccgttttct----------ttcttctcctagATTTCAACCGAAAACGCTTCTG-
i caeRem4.Crem_Contig15 I 386 C 0
s caeSp111.Scaffold582    279346 72 +   484378 -ttttctctttctctccttcccttttct-tcttttcc-ttcttc----------ttcttctccgagATTTCAACCAAAAACGCTT----
i caeSp111.Scaffold582  I 246 C 0
s caePb3.Scfld02_0       3414013 69 -  4147112 --tttctcttt---tcgttcaattttctccctttttc-tgtctt----------tccttctccgagattttAACCAAAAACGCTT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I
e cb4.chrX              17477235 872 - 21540570 I

a score=2947.000000
s ce10.chrX              2727752 28 + 17718866 ---------CTTCTGTGG--CTTC--GGCTTC----AGCAGCATC
s cb4.chrX              17478107 27 - 21540570 ---------CTTCTCTGA--CTAC--AGCATT----AG-GGCTTT
i cb4.chrX              I 872 C 0
s caeRem4.Crem_Contig15   254218 31 -  1794024 ---------CGGCTACGG--CTTC--AGCTTCAGCAAG-AGCATC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    279418 36 +   484378 CTCCGGCAACTGCGACGGGGCTTC--AGCTTC-------AGCATC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414082 38 -  4147112 CTCCGGCAACTGCTCCAGCTCTTCAGAGCTTC-------GGCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   548632 2405 +   720316 I

a score=53596.000000
s ce10.chrX              2727780 52 + 17718866 AG----CGGAATGGAGAGAAAATTGCGTAGTAGTTGTACTGATTGAATTGTTG--------GTG
s cb4.chrX              17478134 57 - 21540570 AG------GAATGGAGAGAAAATTGCGTAGTAGCTGTACTGATTGAATTGTTGTGCTCTCTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   254249 52 -  1794024 AA----CCgaatggagagaaaattgCGTAGTAGTTGTACTGATTGAATTGTTG--------GTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    279454 55 +   484378 AGGG--CCGAATGGAGAGAAAATTGCGTAGTAGTTGTACTGATTGAATTGTTG-------GCTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414120 57 -  4147112 AGAGTCCCGAATGGAGAGAAAATTGCGTAGCAGTTGTACTGATTGAATTGTTG-------GGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   551037 52 +   720316 AG----CCGGATGGAGAGAAAATTGCGTAGTAGTTGTACTGATTGAATTGTTG--------GTG
i caeJap4.Scaffold18213 I 2405 I 272

a score=3620.000000
s ce10.chrX              2727832 6 + 17718866 GTGTGT
s cb4.chrX              17478191 6 - 21540570 GTGGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   254301 6 -  1794024 GTGTAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    279509 6 +   484378 GTGTGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414177 6 -  4147112 GTGTGG
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold18213   551089 272 +   720316 I

a score=1895.000000
s ce10.chrX              2727838 19 + 17718866 GTCGTCGGCCCAGCGCCGG
s cb4.chrX              17478197 14 - 21540570 -----AAACACGGCCTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   254307 14 -  1794024 -----AGACACTGCGTGAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    279515 14 +   484378 -----AGACACTGCTTCGG
i caeSp111.Scaffold582  C 0 I 12
e caePb3.Scfld02_0       3414183 29 -  4147112 I
e caeJap4.Scaffold18213   551089 272 +   720316 I

a score=2430.000000
s ce10.chrX              2727857 31 + 17718866 --------CCAGAGTTG-GT----CAAGAGAGATGCAAAAAGAG-
s cb4.chrX              17478211 44 - 21540570 CGGCTCTTCTCGGGTTGAAAGCAACAAGAGAGATGCAACAAGAG-
i cb4.chrX              C 0 I 131
s caeRem4.Crem_Contig15   254321 37 -  1794024 GCACTC----CGGGTTG-AAGCAAGA--AGAGATGCAACACAAG-
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    279541 31 +   484378 --------CCCGGGTTG-A-----GAAGAGAGATGCAACACAAGA
i caeSp111.Scaffold582  I 12 C 0
s caePb3.Scfld02_0       3414212 32 -  4147112 --------CCCgggttg-aat---gaaaaaagaagcaaca-aGAC
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold18213   551089 272 +   720316 I

a score=-25109.000000
s ce10.chrX              2727888 449 + 17718866 -CTCAGAGTCAAAGGCACATTTCACAAGGAAATGTTATTTTCGGTACACACACTTCCGCCGGATGAACAATAGAAAAAATAGGTGAAGGTTTTTGAAAAAAAAATGCTTTGTAAAGCTTTGTTGTCCGGCTCCGAAAGTAATCCTTTATAATGTGGGATTTATCATCAGTGATACTTGTGTAATATACCTGCCCCAAAAATGTTAACATTTTTGGAAA-TTAGGATTACTGTTGCTCTAAGCCTAAAAATGCAAATCAATTTCaaatttttattaaattataatacttttttaaaaGAAATGAATGGTAAACGTATTGGAAATTAATATTGGGGCAGGTATATGTATTGATACTAT---GCTATACTAGGCATGCCCGAAGTTGAGCTGAAAACTTTCCAAG---------CAAAGTTCTCGAAAATGATGATCTACATTT---------CCCGCTCACAATCAGGATCATT
s caeRem4.Crem_Contig15   254360 243 -  1794024 -CTCGGAG-------------TCACA---AAATTGTGTTGTCACTACACCCG--------GGTTGAAC----AATGA----CAACAACaattggcaaaaaaaaaaaag-------aatttgaaggaGAAATAAGAAAGGGTT-----------GGAACTGTATC---------------------------------AAAATATGATATTCAATGATACTAATAATTAAAGCACCTTTA---CTAGTGAGGAACAATAATTTC---------------TGTCGTCCAT--------------------------------------------------TGCATCTTTGAATACAAC---AATTCTATGAGCAT-CGc----------------------------------cagatttc-------agaaattt----------------ccgg--AA--------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    279572 282 +   484378 CCTCGAAG-------Cacatttcaca---aaattttgtTGTCATT---------------GGTTGAAC---AAAAGAGTCGCGTGAACAATGCCGAAAACAAT-GGTT-------GGGTATTCAGAATAATTCAGAATCGTTC---------GAGAACTGTTTC---------------------------------agatttcgaaactttttgaaa-tattgatAGG--------TA---TTTGAGATGGTGATGAAACCC-----------------TGATCC----------------------------------------------------AAGCTACTTCCAGAGAAC---ATGTTTTCAGATAA-CACAAAG---------AAACCGATCGAGTTGTTTActcaa-tttc-------agataattcGCATTAG--------CCAA--CACAATCTGGAGAGTT
i caeSp111.Scaffold582  C 0 I 21
s caePb3.Scfld02_0       3414244 296 -  4147112 CCCCGGAG-------CACATTTCACA---AAATCTTGTTGTCAGT---------------AGTTGAAC----AAAGAGTCGGATGGACAATCCTCAAAACAATAGGTT-------CCTTTGTTGGACACATTTGAACAAAGTA---------ACAGACTGTATC---------------------------------AATTTTCGAGAACTATGTAAA--ATTCATTGG--------AA---CttgagatgaaaaataatCCCG---------CAGAATTTCGTTC----------------------------------------------------TGCATATTTCAGAAGCACCAACTTATTTCAGGCAT-CACAAAG---------GAGCTTTTCCAGTTGTTTACccagttttc-------agataattcGAATTAGACTAAAATCCcg--aagaatctgga-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   551089 272 +   720316 I
e cb4.chrX              17478255 131 - 21540570 I

a score=-1760.000000
s ce10.chrX              2728337 33 + 17718866 TCCAAAAACTGCGAGTTTCTTGAATGGGTGGAA
s caeRem4.Crem_Contig15   254603  7 -  1794024 ---------TGCAAGT-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3414540 20 -  4147112 ------aaatgttAGTCTCTTGCTCA-------
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18213   551089 272 +   720316 I
e cb4.chrX              17478255 131 - 21540570 I
e caeSp111.Scaffold582    279854 21 +   484378 I

a score=311.000000
s ce10.chrX              2728370 2 + 17718866 TA
s caeSp111.Scaffold582    279875 2 +   484378 TG
i caeSp111.Scaffold582  I 21 C 0
s caePb3.Scfld02_0       3414566 2 -  4147112 TG
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18213   551089 272 +   720316 I
e cb4.chrX              17478255 131 - 21540570 I
e caeRem4.Crem_Contig15   254610 0 -  1794024 C

a score=-2.000000
s ce10.chrX              2728372 10 + 17718866 --TTTTTGCCCA
s caeSp111.Scaffold582    279877 10 +   484378 --TCTTGGTCCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414568 10 -  4147112 --TCCTGGTTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   551361 10 +   720316 tttctttctt--
i caeJap4.Scaffold18213 I 272 C 0
e cb4.chrX              17478255 131 - 21540570 I
e caeRem4.Crem_Contig15   254610  0 -  1794024 C

a score=21664.000000
s ce10.chrX              2728382 208 + 17718866 TCCCC---TTTCTTC---ACTACTTCTTGCGATTCTTGATAAACACTATGGCG---AGAA-GATGCAC------AAAAATGTCCCAAGGGAGCG-AAA-------ATTCAT--GGA-----AGTCAAGA----AGC--AAGACG-TTTTCGACGTTAAACGATGAAATGGGGAAAA--------AGAAAGTGCACCTT--------------TTTCA---ACGTGAGCTGGAAAT--------------------TTCTG----------GAAGTTTCAGAAATCCA----------------------------GAACAGATGTTCAT
s cb4.chrX              17478386 284 - 21540570 tcCCC---TTTCTGCTAGACTACTATTTATGGTTCTTGATAAACACTATTGCGCCAAAAATGCAGAGCACCACGGAAACTCTCCCATGGGACGC-CTAGGGAGTGATGCAT--CTG-----AGTCAAGAAGgcaga--aaaacgtttttcgaCGTTAAACGATGACTGCGGAGGCGCCTCGGCCTAGAAATGCACCTT------TGAGTCCCTCGAA---TGATCGATTGGAAAT--------------------CTTTGTAGGCTG---CATGTCATATAAATCATCGTTTTGTCTGAAAGACACACGATTCCAGAACAGCTGTTCAC
i cb4.chrX              I 131 I 20
s caeRem4.Crem_Contig15   254610 266 -  1794024 --CCC---CGTCTTCC--ACTACTATCTATGGTTCTTGATAAACACTATTGCG---AGAATGCAGCGCA-----AAAAGTTCCCTAGGGAACTT-AAA-------ATGCAT--CTGATGTAAGTCAAGA----AGC--AAAACG-TTTTCGACGTTAGAAGATGA----GGGAGAGCACAG-----AAAATGCACCTTCTTGCATGTGCTCTTTCGA---AGAACAACTACAAATTGGTCCAATAAACCATGTTCCCGTGTTGAATGTGCCATGTTGAATGAATCAT------------------CACCATCCC-GAACAGCTGTTCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    279887 248 +   484378 ----CCGTTGTCTTTC--ACTAC----TGTGGTTCTTGATAAACACTATTTCG---AAAATGCAGCGC------GCAACGATCCCATGGGAACT-AAA-------ATGCAT--CCT-----AGTCAAGA----Agcagaaaacg-tttttgacGTTAAACGatga----gaacaag--------aaaaaaagcaccTTCCAACGGATACTCTTTGCACTGTCATCAATC---------------AAACGAA----CTTT-CAGAT-----CAATC--AACAAATCAT--TTTAATCTTCAAATCGTCTAATTTG-GAACAGCTGTTCAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414578 244 -  4147112 ----C---TTCCCCTC--ACTAC----TGTGGTTCTTGATAAACACTATTGCA---AGAATGCTGCGC------AAAACCCTCCCATGGGAACTAAAA-------ATGCAT--CCT-----AGTCAAGA----AGC---AAACG-TTTTCGACGTTAAACGATGG----GCA------------GAAAATTGCACCTTCTTAGTAATGCTCTATGCACCATCATcgatcaaaaagtg-------aaacgaC----TTTTACAGAC-----CATTT----CGAATCAT--TTTTATCTGTGA--CGACCAATTCT-GAACAGCTGTTCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   551371 209 +   720316 ttttc---tcccttt---acttttACTAGAAATGCTTGATAAACACGATTGCG---AAGATGCTTCAG------AATGATATCCCTCGGGAAAT-GAA-------ATGCACAACGA-----AGtcagaa----aac--ggaaaa-ttttttaactcgTACAAAGA----GCAA-----------ACAAAATCCACCGT--------------CTGAACAATAGACAACAAGAGAG--------------------GT-------------CATTCTGATCG--TCAT------------------CATTATTCG-GAACAGCTGTGT--
i caeJap4.Scaffold18213 C 0 C 0

a score=290.000000
s ce10.chrX              2728590 18 + 17718866 T---TCATATTTCCTGACTTC----
s caeRem4.Crem_Contig15   254876 18 -  1794024 T---TGACACTCCCAGGCCTC----
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    280135 18 +   484378 T---CGACATTTCCTGGCTTC----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414822 21 -  4147112 TCGACGACACTCGAGGGCTTC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   551580 15 +   720316 ----------TTCCTTCCTTCCGAC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17478670 20 - 21540570 I

a score=47619.000000
s ce10.chrX              2728608 256 + 17718866 CTGATCTTCATTTGCTGCCTCATTACAATTCACTTCAATA--CCGG------ATGC------TCTCTATTATT-CAGTTGACCTTGTAGACAGAC---------------TCCTGGTG----------------TTTGGCGG---------------------------------------GAAAGGCGAAAAGAAGCTGTTTCCTCTTCTTCCTATGTCTCTCTACTAACGCTACCTAATAATACGACGTATGTGTGCTAGTATTGTTTTTCACC---CATCCCCAGCCCTTC-AATTTCCAGTAACTTCTAGAATTTCATGTCATCATTGG--------CCA-----------------------------------ATAGCTTCT
s cb4.chrX              17478690 238 - 21540570 ACGACTTCCTTCCGTTCCCTCATTGAAATTCACTTCAACACCCCGG------ATGCTC----TCTATTTTATGCCAGTCGA--------AGGGACCCGTCTT--------------------------------TTTGGCCGgtaggaaaaatagaaaaaaaac-----------------gaaa---aaaaaggagaggtcT-----------------------------CGACTACCTAAAACAA-----------TCGTATTATTTTTCACTCGACAT------CCCATCTCATTTCCAGTaacttctagaatttcatGTCATCACGGGAGGC----CCATCATTTGCTAttct------------------------------
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig15   254897 273 -  1794024 --------CGGAAGTTCGCTCATTGAAATTCACCTCAGCA--CAGG------ATGTTG----TCTATATTATG-CAGACGGCCTCTTTTCCGGACTTGTCTCC-------TCTCAGTGCTCTTTCGGCCCAGTGTTTGACGGGAAGGACGATTAGAAA-------------------------------------AGTGGGCTTC-----------AGTCCCTTGTTGGATGCTACCTTCTAATACAAC------GTGCTGGTATTATTTTTCACC---CAT------CCCTTC-AATTTCCAGTAACTTCTAGAATTTCATGTCATCATTGGCCGC----CCATTCTTTCCGTCTCTTT-------------------TTCGCTCCT
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    280153 294 +   484378 --------CTTCCGTCttctcattgaaattcaCATCGATA--CCGG------ATGTTCTT--TCTCTATTATG-CAGTCAGCCCCTTTTCCGGACTTGTTTGTCTTTTCGTTTCagaaccca------------tttttcttttag-----------------cccccggaatataaaaatgaagtgcggaaaaagaagggag-------------aaGACCTCGA------CTACCTAATAATACGAC----GTGTGTTGGTATTATTTTTCACC---CAT------CCCATC-AGTTTCCAGCAACTTCTAGAATTTCATGTCATCATTGGTCCCTCGGCCATTCTAGCTTTCCTCTTCCGTTA-------------GTAGCCATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3414843 296 -  4147112 --------CTTCCGCTTCCCCATTGAAATTCACTTCAATA--CCGG------ATGTTCTTTCTCTCTATTATG-CAGTCGGTCTCTTTTCCGGACTTGTTTGCCTTC---TTCCAGTGCTCT------------TTTGGGCCCCGA-----------------TGTTTGGTAC--------GAAGGGCAAAAAGAGAAGGCCT---------------TGCTTCGA------CTACCTAATAATACAGC-CATGTGTGTTGGTATTATTTTTCACC---CAT------CCCTTC-AATTTCCAGtaacttctagaatttcatGTCATCATTGGCCTC---GCTATTCTTGCCTATCCCTTCCGTTGTTTGCTACTCGTtatagcttct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   551595 227 +   720316 -----------------CCTCATTGAAATTTGCTTCAGCA--CCGGAACTGCATGTTCTCTCTCTCTATTATG-CAGTCGGTCTCTTTTCCGGACATGTTTGTCTCTG--TCTTCGTTTTCT------------GTCGTCGTGTTT------------------------------------------------GAGAGG----------------GGGGCCCAGG------CCACTTAATAATGCACG--------TCTGGTATTATTTTTCACC---CAT--CCATTCCCTC-AATTTCCAGTAACTTCTAAAATTTCATGTGGTGGCTCGCCT-----CTATCTTCC--------------------------------------
i caeJap4.Scaffold18213 C 0 I 142

a score=-25984.000000
s ce10.chrX              2728864  60 + 17718866 AGTT----------------------------------------------------G--------------CGATCTTTTT-----------AACCGTAGAATTCTACATAA---------ATATTCAGCGCCCTTAATTTTAAAA-
s cb4.chrX              17478928  52 - 21540570 -----------------------------------------------aactgaaaaaaaaccaaagga---TGATCT--------------------------------------------ATAATTGTCCCCCTCTGTTTTTAAA-
i cb4.chrX              C 0 I 65
s caeRem4.Crem_Contig15   255170 127 -  1794024 TGTT----------------ATAGCATTTCGTAACGAAAAAGGagcaaaatgaaaagaaagagaaagagagtgacCTTTTTCTAGATGCAAGCAACACACGATTTCCGATGAGAAACGTTGATaattat---tctcaatttcagaa-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    280447  99 +   484378 CATTTGT--------GAAGAAGAgc------------aaaagtggaaaaatggaaag--------------tgaCCTTT----------AACGAAATTGGGGCTCTTCAGGAGACTTATGCATATTA-T---TCCATATTTTAGAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3415139 108 -  4147112 tcttcttcttcgaaagaagaaacgg------------aaaa-tgggaagtgaaaaag--------------tgaccttttt-------gaagaaggttattttgtttcacaaaa--tgagtataatagT---TCCTAATTATGCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   551822 142 +   720316 I

a score=-3438.000000
s ce10.chrX              2728924 24 + 17718866 -CGAAAATTACG-----------CTGCTACCGATAA
s caeRem4.Crem_Contig15   255297 28 -  1794024 aaga-aattggA-----TGGACTCAGCATTT--CAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    280546 21 +   484378 -CGT-AATTGGA-----------TGGCTTTT--TGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3415247 33 -  4147112 -AGTAAATTGGAAATACCCGCCCTTGGTTCT--TGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   551822 142 +   720316 I
e cb4.chrX              17478980 65 - 21540570 I

a score=-9758.000000
s ce10.chrX              2728948 43 + 17718866 C-----CCCACTACAACCCAAAG---AATGG----------CTAAA-AGAGGAAGGA------------------------------------------CTTCT
s caeRem4.Crem_Contig15   255325 43 -  1794024 CCCAATACCCCCGGAATCTAGCG---AGTCG----------------ACCGAAAGGG------------------------------------------CTTTT
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    280567 40 +   484378 C---GTTTCCCCGGAATTTACCC---ATTTA----------------AGGAAAAGGG------------------------------------------ctttt
i caeSp111.Scaffold582  C 0 I 12
s caePb3.Scfld02_0       3415280 47 -  4147112 C-----TATCCCGGAATCCAACCTAACTCTA---------ACCAGC-AAGAAAAGGT------------------------------------------CTTTC
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18213   551964 96 +   720316 -----CCTTTCTGCAACTGAAAG---AATAACGGCTCATTATTAGAGAAGAAAACGAATGAATAATGGAAATTGTCTCCTGAGATCTGTTTctcctttcctttt
i caeJap4.Scaffold18213 I 142 C 0
e cb4.chrX              17478980 65 - 21540570 I

a score=110575.000000
s ce10.chrX              2728991 238 + 17718866 TTTCCT------------------------------------CTCATTTCAAATGCATAAGCCAGTTGTCAACGGG----GGTCTTC---GGGCGCGGTTATTTCGTGTAATG---CTG-----CGAGCACCGGACTGTGTTGAAACGTACACACATTTCTGAACAACAAAAGAGCA---CGCTGACAATGTTTTGCGCA---------ACG---------ACG-----ATTGTCGTCGGGC---GCCGCCACTGCTGA------ATGGATCATCTACATCCGTCA-----G---------C-TTTTTGCACTTGAATGAATGCC--ATTGACGG-CGACAA
s cb4.chrX              17479045 264 - 21540570 ttgtct------------------------------------ttcaTCTCAAATGCATAAGCAAGTTGACAACGAC----GGTCCTT---AGGTTCCGC-GCCGTATGTTATGTGTCCAGC---GGCATCCCA---TGTGTCGAAAcgt--acacatttttgaataacAAAAGAACACGTCGTCGTCAATGTTTTGTGCAA--------ACGGCTCTTCTTACAGCAAAAACGTCTTGCGGCGAAGAAGCTTTTGC-GC------GCGGATCATCCATATCCGTCAAAAACG---------C-TTTTTGCACTTGAATGAATGCTTAAATGGCGG-CGGCAA
i cb4.chrX              I 65 I 29
s caeRem4.Crem_Contig15   255377 242 -  1794024 ATGCCC------------------------------------TTCATCTCAAATGCATAAGCAAGTTGTCAACGATACTGGGTTTTT---TAGCTCCTC------ATGTTATG---CTAG----AGCACAC-----TGTGTCGAAAcgt--acacatttttgaataacaaAAGAACA---CGTTGACAATGTTTTGTGCAA-G------ACG---------ACAAGGAAAACGGCCTCGGGC---GCCGCTGTCGC-GCTGAATGGATCATCATCTACATCCGTCA-----G---------C-TTTTTGCACTTGAATGAATGCC--ATTGTCGG-CGACAA
i caeRem4.Crem_Contig15 I 9 I 1
s caeSp111.Scaffold582    280619 234 +   484378 ---tcc------------------------------------CTCATCTTAAATGCATAAGCAAGTTGTCAATGGTTCTAGGTTCCTTC-TTGCGACGT------TTTCTATG---CTGGCA--CACACAC-------TGTTGAAACGT--ACACATTTCTGAATAACAAAAGAACA---CGTTGACAATGTTTTGTGCAA-Gacaacgacg---------acgacgaaaaCGTCTTCGAGC---GCCGC---------------CTGGATCATCTACATCCGTCA-----G---------CGTTTTTGCACTTGTATGAATGCC--ATTGTCGG-CGACAA
i caeSp111.Scaffold582  I 12 I 1
s caePb3.Scfld02_0       3415339 235 -  4147112 ---TCC------------------------------------CTCATCTTCAATGCATAAGCAAGTTGTCAACGGTTCTGGGTTCCTTCAAGGCTCCGT------ATGCTATG---CCAGCACTCACACAC-------TGTTGAAACgt--acacatttttgaataacaaaagAACA---CGTTGTCAATGTGTTGTGCAA-GACGGCAACG---------ACGCCGAAAACGTCTTTTAGC---GGAG----------------CTGGATCATCTACATCCGTCA-----G---------C-TTTTTGCACTTGTATGAATGCC--ATTGTCGC-CGACAA
i caePb3.Scfld02_0      I 12 I 1
s caeJap4.Scaffold18213   552060 263 +   720316 -tttcctctcagagaaaaaaaaaacgagttcCGTGGACTTGGCTCATTTCAAATGCATAAGCAAGTTGTCAACCGC----CGGTTTT---GCGTCGTTT------CTTTTATG---CTGG----TGCACAC-------TGTTGAAACGT--ACACATTTTTGAATAACAAAAGAACG--------AAGACGTTTTCGACATCGACGATAGTG---------ACAGCAGAAGCGTCG---------GGAGCCGTTGA---------ATGGATCATCTACATCCGTCA-----GTTTCTTATTC-TTCTCGCACTT-------TGCCT-ATTGTTGGACGGCAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-2048.000000
s ce10.chrX              2729229 19 + 17718866 ----ACGACTCCTCTCTCGTTGC
s caeRem4.Crem_Contig15   255620 12 -  1794024 ----ACGACTTGCGGC-------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    280854 16 +   484378 ----ACGGCTCGTCTTTTTC---
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3415575 16 -  4147112 ----ACGACTTGTCTGTCTC---
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   552323 15 +   720316 ACGAACCGCTGGCGC--------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17479309 29 - 21540570 I

a score=40098.000000
s ce10.chrX              2729248 78 + 17718866 ACCAACGCAACACACACACACACACAGAAG-CTCATCAATTTTTCAACGCG-GAAAAGTGAGG-GCAAAAGTGCATTTGAA
s cb4.chrX              17479338 66 - 21540570 ATTTTTACAACAAC-------------Ggg-ttcatcaatttttcaaaacgtgAGAGGCCAGT-CCACCAAAACAGTTGAA
i cb4.chrX              I 29 I 369
s caeRem4.Crem_Contig15   255632 65 -  1794024 ACCAATGCAACAGA-------------GGg-ctcatcaatttttcaacgcG-GAAAAGTGAGG-GCAAAAGTGCATTTCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    280870 66 +   484378 ACCGACGCAACACA-------------GGGactcatcaatttttcaacgCG-GAAAAGTGAGG-GCAAGAgtgcattttta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3415591 66 -  4147112 ACCACCGCAACAGA-------------Ggg-ctcatcaatttttcagcgcg-GAAAAGTCAGGAGCAATAgtgcatttcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   552338 58 +   720316 ACCAGCC--------------------CGC-ttcatcaatttttcaaaata-gaaaagTGAGG-GCAAAAGTGCGTTTTGA
i caeJap4.Scaffold18213 C 0 C 0

a score=-65252.000000
s ce10.chrX              2729326 227 + 17718866  
s caeRem4.Crem_Contig15   255697 437 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    280936 397 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3415657 442 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   552396 412 +   720316  
i caeJap4.Scaffold18213 C 0 I 62
e cb4.chrX              17479404 369 - 21540570 I

a score=-1318.000000
s ce10.chrX              2729553 21 + 17718866 TTC-------TTTTATTCTTGAGTGCTT-
s caeRem4.Crem_Contig15   256134 27 -  1794024 GTCATGTA--TTATATCTAAAAATGCTCT
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    281333 29 +   484378 TTGTTATATGTCTCATCCATATTTGCTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416099 22 -  4147112 TTGTTATA--TTTCATCCA-----GGTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   552808 62 +   720316 I
e cb4.chrX              17479404 369 - 21540570 I

a score=-166.000000
s ce10.chrX              2729574 11 + 17718866 CTCATAAATAA
s cb4.chrX              17479773 11 - 21540570 CCCAAAAATAC
i cb4.chrX              I 369 C 0
s caeRem4.Crem_Contig15   256163  6 -  1794024 CCCAAA-----
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    281362 11 +   484378 TTCATAAATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416121  7 -  4147112 TTCAGAG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   552808 62 +   720316 I

a score=-20966.000000
s ce10.chrX              2729585 155 + 17718866 C-------------------------------------------AGGGCGACTTTATAATAATTATTCACTCTTTTGAGCCAAA----------------TCCCCCCCCC------------------CCCCCCCATTCTTT--TCAATTGTATGGAACCGACCAAGCAACAACA-----CAAAAACAATGCC-----------GAGTGAATGAAGATAGAATAC---AAACGACATGTC------------AGAggttccggct-----------
s cb4.chrX              17479784 200 - 21540570 CACACCCACTTAAACTGATTGAAATGGAGACGTGAAAAGAGTCGACATCATTATAATACTAATCATTTCCTTTCTTTTATAAA--------------------CCGATTC------------------CAATCCCATCCATCTTTCAATTGTTCAGAACAT-------------------GAAAAACAATGTGTGTAGTGTCTGGGGGCAAGG--------AAACGAGGAACGGCATGTCATTAGAAAATGAAAGGGTTCTGGAT-----------
i cb4.chrX              C 0 I 182
s caeRem4.Crem_Contig15   256169 136 -  1794024 -------------------------TGACATGTGAAGTGATTATCGATGATGGTGATCATCGTCATTATTTTCCCTCTGT------------------------------------------------CAATCCCATTCATC--TCAATTG------AAAG-------------------CAAAAACAATGTG------------------AG--------AAAC---GAACGACATGTCATTAGAGAATGAAAGGGTTCTGGAT-----------
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    281373 137 +   484378 C--------------------------------------ATTTTAGATTATTATCAACAACatcatt--cttcattctc-------------------------------------------------aaatcccatttttc--tcaattataTGCAACCAAC----CGCCTatagatttgaaaaagaatctt-------------GTGAGAG--------ACAC---GAACGCCATTTCGTTAGTTAATGGAAGG--------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416128 136 -  4147112 -------------------------------------------------AAtatcaacatcatcatcagcttttttttc-------------------------------------------------aaatcccatTCTTT--TCAATTGTGTTGAATAAGC----CAACCACG-----CAAAAACAATGTC-------------GTGAGAGA----AGAACAC---GAACGGCATGTCATTAGCAAATGAAAGGGTTCTGGAT-----------
i caePb3.Scfld02_0      C 0 I 49
s caeJap4.Scaffold18213   552870 183 +   720316 -------------------------------------------AAGTGCTCTTTTATAtctattttcaatttcctttGAAAAAGATGCCCGATGGCAATCTATCTACCTCTTTTCTTGTTGCTTGCAAAATTCCCATTCTTC--T-AATTATACGAATCCGCCGAA--------------GCAAAACAATGTA-------------CGGAACG---------------GCATGTCAT-----TAGTGAATGAAGGGGCTCCAAACCAATGATGGGG
i caeJap4.Scaffold18213 I 62 C 0

a score=-5062.000000
s ce10.chrX              2729740 44 + 17718866 gttttg-aacgtatatactcaaaa---tgtgctcaaatcaacaaattg------
s caeRem4.Crem_Contig15   256316 37 -  1794024 Gtttagaaat-----tgagaaaag---tgtTTTTC-A-CTGCAAATT-------
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    281510 38 +   484378 GTTCTG-AAC-----TAATTATAG---GGTGTTACAA-CTAAGAATCG------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   553053 41 +   720316 ----TG-AAA-----TAGGAAAAGCTACGTGTTT--A-CCGCGACCTTATGTTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3416264 49 -  4147112 I
e cb4.chrX              17479984 182 - 21540570 I

a score=-26829.000000
s ce10.chrX              2729784 140 + 17718866 cggaatgaaacttctcaaaaa------------------------actgttcaaaat-ttcgaaaaaaaaaacccaattttggcca-aTTTATCGTAG----AGAAAGTAAGCTGAGGCGCAAAAATTTACTTTTGTTTTGAAATCAATATGCTTTTACAGTACTTAATT
s caeRem4.Crem_Contig15   256353 122 -  1794024 -------AATTTTCTCGAGAGTGGTCTGTCTGGGTCGC-----TCACTGT--AAGTTATTTTCTAGC--AGACTAGATTTTGATGA-AAGACG-GAAG----AGTTTAACAGTGAAG-----------------TGTGTTGCAA---------TTTCTCATTGACTAGTC
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    281548 108 +   484378 ------TGTTCTGACCAATAACGTCTTTCCAAAAATGC-------ACTAT--GAGAT-TGGAAGAGC---AATCTGGTCTG--CAA-ATCACTTGGAG----AGTTGCA-------------------------TATGCTGCTA---------TTCCTCACT--TTCTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416313 131 -  4147112 CGGAACTAtacttctcaat------ttctcaaagaTGCCAGAAGTACTGT--AATTC-TTGGACAACCAAAACCTAACTTGGACAACATTACTCAAAG----AGTTACACAATTGAG-----------------TGTGTTGCAA---------TTTCTCATTGCCTCTCG
i caePb3.Scfld02_0      I 49 C 0
s caeJap4.Scaffold18213   553094 106 +   720316 ---------TGTAATGAagaaaacatttagaaaagtaA-----GTACTGT--ACTCC-T----------AGGTACAATTTTTGGAAGTTTTATCAGAGCCACAGGAAAACACACAAG--------------------------A---------TTTCAAACTACTTGC--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17479984 182 - 21540570 I

a score=11273.000000
s ce10.chrX              2729924 40 + 17718866 -GCTCTGTCTTGCTCCGTCAGTGGTCTTTTCCGTTTTGTAT
s cb4.chrX              17480166 35 - 21540570 -TCCATC--GTGCTCCG---GGGACCTTTTTCCTTTCCCGT
i cb4.chrX              I 182 I 42
s caeRem4.Crem_Contig15   256476 37 -  1794024 -CCTTTCTTGTGCTTCG---GGgaccttctttttttcgttt
i caeRem4.Crem_Contig15 I 1 I 6
s caeSp111.Scaffold582    281656 36 +   484378 -GCTGTTTCGCGCTTC----GGGACCTTTTCTGTCGTTTTT
i caeSp111.Scaffold582  C 0 I 8
s caePb3.Scfld02_0       3416444 37 -  4147112 -GCGTTTCTGTGCTCCG---GGGAccttttctttcgttttt
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   553200 37 +   720316 CGCTTTTTTGCGCTTTG---GGGACCTTTTCGTTTAGTAT-
i caeJap4.Scaffold18213 C 0 C 0

a score=-1882.000000
s ce10.chrX              2729964 20 + 17718866 GACGATGTGAATAGA-GAGTT
s caeRem4.Crem_Contig15   256519 18 -  1794024 tctggCGGG---ATGTTAGCC
i caeRem4.Crem_Contig15 I 6 I 2
s caeSp111.Scaffold582    281700 20 +   484378 GATGGCCAGGAAATG-TAGTC
i caeSp111.Scaffold582  I 8 I 2
s caePb3.Scfld02_0       3416486 20 -  4147112 GATAGCGGGGACATG-TAGTC
i caePb3.Scfld02_0      I 5 I 2
s caeJap4.Scaffold18213   553237 11 +   720316 ------GTGGTCATG-TA---
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17480201 42 - 21540570 I

a score=138029.000000
s ce10.chrX              2729984 181 + 17718866 GAAGCGTTGTGCTTGGCA-----------CAAGCAA--CAAGAAACACGAGCCTTTTTG-CGCGCTCTCGGGTAATATGAAAGAAAATTTAATTAGACG---GAGTCGCCTGTTGATTACG--TCTCTCtacacacacacatacactcacacatacatacacacacGGCGCGGCAAAAATTGAAATGCCAG--------AAAAAAACT
s cb4.chrX              17480243 201 - 21540570 AAAGCGTTGTGCTTGGCACTCTTCTTTCTCCAACAACGCAAGAAACACGAGCCTTTTTG-CGTGTGCTAGGGTAATatgaaagaaaatttaattAGACG---GACTCGCCTGTTGATTACGTTTTTCCTTACATacacagagagagagagagagagagggaga---gaaacggcaaaaattgaaatgccAATGGAGGGGACAAAAAct
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   256539 151 -  1794024 GAAACGTTGTGCTTGGCA-----------CAAGCAA--CAAGAAACACGAGCCTTTTTGCCCTGCTCTCGGGTaatatgaaagaaaatttaattaGACG---GACTCGCCTGTTGATTACG--TCTCCCTACATACAC-----------------------------Acacggcaaaaattgaaatgcaag----------aaaaact
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    281722 151 +   484378 GAAACGTTGTGCTTGGCA-----------CAAGCAA--CAAGAAACACGAGCCTTTTTGCGTTGCTCTTGGGTaatatgaaagaaaatttaattagACG---GACTCGCCTGTTGATTACG--TCTCTCTACGCACAC-----------------------------ACACggcaaaaattgaaatgccag----------aaaaact
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3416508 149 -  4147112 GAAACGTTGTGCTTGGCA-----------CATGCAA--CAAGAAACACGAGCCTTTTTGCGCCGCTCTCGGGtaatatgaaagaaaatttaatTAGACG---GACTCGCCTGTTGATTACG--TCTCCCTACG--CAC-----------------------------ACAcggcaaaaattgaaatgccAG----------AAAAACT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213   553248 153 +   720316 -----GTCCCGGTCGGCA-----------CAAGCAA--CAAGCAACATGAGCCTTTTTGCGCCGCTCTCGGGTAATATAAAGGAAAATTTCATTAGACGGGTGGCTCGCCTGTTGATTACG----TCGCTGCGCACACAGAC-------------------------ACacggcaaaaattgaaatgccGA--------AGAAAAACT
i caeJap4.Scaffold18213 C 0 I 75

a score=-29298.000000
s ce10.chrX              2730165 159 + 17718866 GAGAAGAGCCGTCTTCTAACGCTTCCAGGACCACA----ACTCGAGCACTGTTACAGAGAAGAGAATTTAGTAAATTGAAGGAGGAGTGACGGTTTTGGGTATTTTGGTAACATCTCAAA-CAAA--AAAAATTTTAATTGGAGATTAAGGTAAAATATGGCATAT
s cb4.chrX              17480444  78 - 21540570 aagaaac---------------------aaaaaaa----acgatg-------tACGGGACCGTG---------------------AAAAACACC-----GGA----AATAGGGTTTTGAC-AGAGTCAAGGGTCTA-------------------------GGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   256690  78 -  1794024 a---------------------------aaaggGA----CCCAGG-------CATCTGACCGAG---------------------GACCACGGTTGGGAGGA----AATTGTTTTCTACTAAAAGTCAAAGGtttc-------------------------ttcgt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    281873  97 +   484378 agaaga----------------------gGCAACA----GCGGGGG----ACTAAGGGACCACA----------ACCAATGAGGgggaaattgtttttaaga-GTCGATGGTATCtcatt-cgag--aaaaaattc-------------------------tctgt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416657  80 -  4147112 AGGCAA----------------------AACGGCATCTGACTGGGG----ACTACAAGACGAaa---------------------ggaaattgtttttcaaa----gatggTATCTTGTT-aagg--aaa--------------------------------ttat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   553401  75 +   720316 I

a score=-57830.000000
s ce10.chrX              2730324 143 + 17718866 TTTTCAAATTTT----GAACCGCTGTTGATAAAT-TAAAACAAAT-TTTAAACGTTGGAATTATTTAAGT---CAGTAAATGTTTTT-GTCAGGTATTTTTTTGTTGTTTTTTTCAATCGCCATAGACTTT-TACGAAG------GGAATAGG-AAGTAAA
s cb4.chrX              17480522  92 - 21540570 TTTT-------------------------------CTGGACTAAT---------CAGTTGATAGATCAGA---aagaaa---------attggcaatttttct---------ttcaagtGTCACAACTTTT-TACAGGGGGTCCACAGATTGAA-------
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig15   256768  97 -  1794024 ttttgaa----------aaac--------------cgaaactttt---------ttggaagtgagtccta---cagtaacctttgGTGACTGGgaacattttttatg-----tttcagaaagACAAAGTTT-Tacggga----------------------
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    281970 119 +   484378 ttttccaattat----aTAGCAGC-----AAGTCATACGGTTTTCGTTTCgaatcaacaattttttgagagagaatgaa---------agcAGAAAGACATTG---------TTTTTTGGGagcagttttt-tgaaaaa------ttggtggg--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3416737 109 -  4147112 ttttagagt--------AAGCTCC-----TAGTT-TTCGGCTTTT-TCACGGACTGGCCAATACTTCaga---catgaa---------aacaaaaaacc--ca---------ttccaggaaaagagtttttgtaaaaaa------aagcttga--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   553476  80 +   720316 TCTTCAGATTTTCTCCCAGTCGGTAGAGTAAGAG-CATGGCTCGT----------TTTAAGTATTTTGGA---GAGGAAGCGGTA---GTCaacaaa----------------------------------------------------------------
i caeJap4.Scaffold18213 I 75 C 0

a score=-6200.000000
s ce10.chrX              2730467 35 + 17718866 ---------GTTCTAGAAAAAAACCACCGGGATAACATAGTGAA
s caeRem4.Crem_Contig15   256866 20 -  1794024 ---------tttttgaaaaatagc---------------gtaaa
i caeRem4.Crem_Contig15 I 1 I 1
s caeSp111.Scaffold582    282089 22 +   484378 ---------AAACAGGAAAACAATC-------------ATTAGG
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3416846 20 -  4147112 ---------acaTTGACAGAAAGT---------------TTAAG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213   553556 28 +   720316 tttttagaaaattgaagaaaaaac---------------ggaa-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17480614 42 - 21540570 I

a score=113567.000000
s ce10.chrX              2730502 131 + 17718866 CCGGAAAAAGAACAT-------CTAAGGATCCTACCTTTTCTTTGACAGGTGCATTGGATGAAAGTGTTGTCTTCCTGACGAATGTGCCAGACTCTGCTTTTTGCTCTCTTCGGGCCTCTTCTGCAGCTAGTCTGAAA
s cb4.chrX              17480656 133 - 21540570 cctaaaaaaatttattta----caGTAATACTCACCTTCTCCTTAATCGGCGCATTTGATGATAGTGTTGTTTTTCTGACAAATGTGCCACTTTCTGCTTTTTGCTCTCTCCGGGCTTCTTCTGCAGctagtctgaa-
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   256887 137 -  1794024 acggaaaaagatcGTCAAGGATCTGTATAACTAACCTTTTCTTTGACAGGTGCATTTGATGAAAGTGTTGTCTTCCGGACAAACGCGCCAGACTCTGCTTTCTGCTCTCTTCGGGCTTCTTCTGCAgctagtctgaa-
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    282113 117 +   484378 ---------------------TCTGTAAAACGTACCTTTTCTTTGACAGGTGCATTGGATGAAAGTGTTGTCTTCCTGACAAATGTGCCAGACTCTGCTTTTTGCTCTCTTCGGGCTTCTTCTGCAGCtagtctgaaa
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3416868 116 -  4147112 ----------------------CAGTAACACTCACCTTTTCTTTGACAGGTGCATTTGAAGAAAGGGTTGTCTTCCGCACAAATGTGCCAGACTCTGCTTTTTGCTCTCTTCGGGCTTCTTCTGCAGctagtctgaaa
i caePb3.Scfld02_0      I 2 I 6
s caeJap4.Scaffold18213   553584 131 +   720316 -------aagggTGATCAAGACCcgtaaaacatactttttctTTGACGGGTGCATTTGATGAAAGTGTGGTTTTCCGGACAAATGTACCGGAATCTGCTTTTTGCTCTCGACGGGCTTCTTCTGCAGCTagtctgaaa
i caeJap4.Scaffold18213 C 0 C 0

a score=-23482.000000
s ce10.chrX              2730633 111 + 17718866 CGGAACGAATTATGAATTTTGTAGAGATTGATATGAttgaaggaggactaacggtttggttctttagactcaaaatgtgctcgaattggttaat--gagatttttcaaaaact
s cb4.chrX              17480789  73 - 21540570 --------------aatgtga-----------acGATTAGTGGCGCTTTCTAAAAATCGTTGTTT------AACATCTG----AAATAAGCACT--AACAATT---AGAAATC
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig15   257024  27 -  1794024 --------------aattt-------------------------------------------------------atata----gGTTAGGTAC-------------AGTAATC
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    282230  21 +   484378 --------------------------------------------------------------------------atatg------------ac---AAAATTT---AGAAACT
i caeSp111.Scaffold582  C 0 I 6
s caeJap4.Scaffold18213   553715  52 +   720316 ---------------------------------------------------------aaatattcacTGTAGAAAACTA----TTTTGGTTGCTGGAAAATTTatctaaaatg
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3416984   6 -  4147112 I

a score=-30747.000000
s ce10.chrX              2730744 107 + 17718866 attcaaaaactgtttatggtgattcaaaa---ttttacaaaaaaaaattaagctaatttcaactagattctaaaattttgcaag---------------ttttcatgtgtcacagc----tgttggaa--a
s cb4.chrX              17480871  95 - 21540570 At----------ttttttGTggtgaaagt---tttt-----------------ttttttttgaaagacacaACGACACCCAGGGTTTTCATTATTCACTTTTTCGTTTGGAATACc-----gctgaaaaa-
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig15   257063  89 -  1794024 AT---------ATTAttcgaatttcaaac---tttt-----------------tgatattattcTGACACGATGACATTCAGgg-----attatattttttttagtataCTGTAGT-----Atttaga---
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    282257  75 +   484378 AT---------GTTTCTGACGTTTAAAATTCATATT-----------------AAATTTCTGTTTGACACGACGACGCTCAGAG---------------TTTTCGGATGTAG------------GGAA---
i caeSp111.Scaffold582  I 6 I 140
s caePb3.Scfld02_0       3416990  39 -  4147112 -----------------gaaCTTTTAtatactttct-----------------tcttttttttttg----------------------------------tttcaga------------------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   553767  84 +   720316 ------------tttttgacatt---------tttt-----------------ttataattttgagACAACACAACATTTaaat------tcacaaattttttaGACTGAAATTCTTTCATGGTTAAA---
i caeJap4.Scaffold18213 C 0 C 0

a score=-20446.000000
s ce10.chrX              2730851 89 + 17718866 ttaactattttcaaattatctttcaactttattcttttaaaggtacattta-----aagccgataggagcccaattttaggtgacctaccggct
s cb4.chrX              17480966 45 - 21540570 ----tcatttttagattttcat---------------ttGAAGTACAA------------------TATCTT---CTAGTTTGGT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   257152 60 -  1794024 ------attttgagattttgag-------------aataaaaaaacaaac------cgGTCAGTGGGAACTTGACTTGATTTGAt---------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3417029 59 -  4147112 -ttctttcttcaaatttcccat-------------ttttacaCGACGA------------CACTCAGAGGCTCAGTTTTCCTTCC---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   553851 61 +   720316 TTGCTTTggtttaaattaaaat-----------aaattgaaaacagaaaaaatgtggGACCACCTATTGCCT----------------------
i caeJap4.Scaffold18213 C 0 I 22
e caeSp111.Scaffold582    282332 140 +   484378 I

a score=-2431.000000
s ce10.chrX              2730940 30 + 17718866 taaaacggaataatatgagataaactacca
s cb4.chrX              17481011  6 - 21540570 -----CTGAAA-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   257212 19 -  1794024 -----tagaaa----cgagaaaaaaaat--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3417088 20 -  4147112 -----cagaaaaacttgagaaaaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   553912 22 +   720316 I
e caeSp111.Scaffold582    282332 140 +   484378 I

a score=-37922.000000
s ce10.chrX              2730970 126 + 17718866 aattataaagttaacaa-agctatgatttgaaaaaattt--ccaactgc---taaaacttgta------------taaatt--------tgcaaaattgtatatgtcagcttacttaggtttaaaa--------------ttttgaagttccata-------caaacgtttta
s cb4.chrX              17481017  79 - 21540570 AAGGACAGGACG-----------------------TTTCCACAGCgtga---gaaaatatgaa------------aaacca------agggcaaactgaaa----------------------aag--------------------agcaacaca-------aaaaattata-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   257231 139 -  1794024 cagaactggGTGAG---------TGAGTGAATTGAGTTACTCAATCTAATTTGAACAcaagaa------------aaaacggatttcacaacaaaataagA------------CTCTGGTTTCAAGgttttcgttttctgttttgtagGTACctacttttccaaaaaatctg-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3417108 105 -  4147112 acgtatAGTGGGAAC-------TTGTCTTGATTGAATTA--CAGTTAGA---GAAAACGTGAATCGGGGTTTTGCTAACCC------ACTTCAATCCGAAC----------------------AAA-----------------TG-AGATTCCTA-------AAAACTTT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   553934 111 +   720316 AATTTTAGAGATGGCGGCAGACATGA---AAACAATTCC--CAATCTTG-TCAAAAACCTGCAATTTTCTGTCTCCAATTT-------------TCTAGGA------------TTTAGTTTAGTAA-----------------TG-aagaaaata-------cgaaa------
i caeJap4.Scaffold18213 I 22 C 0
e caeSp111.Scaffold582    282332 140 +   484378 I

a score=-47439.000000
s ce10.chrX              2731096 126 + 17718866 aatttttgttatatatttgagcttattttgaat-acatatgtttaaaa------aactatttcccgagcgtt----agttcttcttAAAATTTT-TTATCGACACCCTGAAGTTATTTTAGTTTAGGTACAAAACTTA-
s cb4.chrX              17481096  54 - 21540570 -----------------------------------taatgGT-----A--------------------CATGCAAAGA--------ATaat----------agtttc---agaaaa---aatcaggtaGACAAAATAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   257370  58 -  1794024 -----------------------------------aactgATTTGAAA--------------------CGTG----GA--------AAAGT----------GGATTC---AGAAAACCTAGTCTGACCAGAAAAATTA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    282472  88 +   484378 --------------agtttttctttttcttgac-ttGTAGTTTGtgga------aaca---ttttcaacGTG----GG--------AAAAT-----------GGTCC--GGGTAAACCTAGTCTGAGTGA-ATATTCA-
i caeSp111.Scaffold582  I 140 C 0
s caePb3.Scfld02_0       3417213 104 -  4147112 -------GTT-TCCGTTTGTTTCTGTTCTTATT-CTGTTGTTTCTAAAGCATCCAACAAATCCTACATCGTG----GG--------AATGTT---------GGGTCC---AGCGAATCTAGTCTATGTGA-ATAATAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   554045  88 +   720316 -----------------------aattttcaacaaaactaat----aa------aatcaattattaaacttg----aa--------ataaattcaacGACTGGAACT-----GAAAGTTATTGAAAGTAC-AAACCACG
i caeJap4.Scaffold18213 C 0 I 84

a score=-2960.000000
s ce10.chrX              2731222 3 + 17718866 GAA-
s cb4.chrX              17481150 2 - 21540570 TG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   257428 3 -  1794024 GGA-
i caeRem4.Crem_Contig15 C 0 I 115
s caeSp111.Scaffold582    282560 4 +   484378 AGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417317 4 -  4147112 TGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554133 84 +   720316 I

a score=-10323.000000
s ce10.chrX              2731225 83 + 17718866 TTTTTTGTACTTTTTTGAAACTAATTACTTTAAAAAAATTTTAAT-ACTGAATGCGTTAACGATTTTAACATCTAATTCAACTA
s cb4.chrX              17481152 15 - 21540570 --------------------------------------TTTTAGG------------------TATTTTTA-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    282564 43 +   484378 -----------------CAAC----------AAGGAAAATTGGGGACAAGCATGCATGAG-ATTGTTGGCA-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417321 35 -  4147112 -----------------GAAC----------AACATAAATTTGGG-CAGGCATGC--------TCTCAGCA-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554133 84 +   720316 I
e caeRem4.Crem_Contig15   257431 115 -  1794024 I

a score=-14145.000000
s ce10.chrX              2731308 62 + 17718866 GACatattat----tataa-------taaattcaa----aaaaaaaGACAAATATGGCATGCATGTAACTCTCGATC
s cb4.chrX              17481167 27 - 21540570 ---ATACTG-----------------TAGTCACTG---------GTGATAAGAATC---------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    282607 56 +   484378 ---ACATTAA----TGGGA-------GAGAcataa-----aaaagagacaagCATTCATT--ATTCTTCTTCGTGAC
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3417356 51 -  4147112 ---ACATTGG----TGG---------GAGACACAA-----GCACGAGACAAGCAGTC-----ATTTGTCTTAAGGTC
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18213   554217 53 +   720316 AACAGATTAGAAGTTGTAAATGtgttgaaacaaaaaaacaacaacaaacaaat------------------------
i caeJap4.Scaffold18213 I 84 C 0
e caeRem4.Crem_Contig15   257431 115 -  1794024 I

a score=131280.000000
s ce10.chrX              2731370 179 + 17718866 GTAACCATAATAACCGAATGTACCTTGCAATCTGGTCTATTCCCAGCATTGCCAGGGGGACAGATTCCTGTAGTGTCCTATCTTGGCCGACGGACTATTCCGCAAGTGATGGTGTGCATAATGGCGGT----GGCGTGGCGTTGGAGAATGGTGCGTGTG--GGACCTGCTGTTG-----CCGGCTGCAG
s cb4.chrX              17481194 163 - 21540570 ----ACAGCATTGATAAGAGTACCTTGCAATCTGGTCTATTCCCAGCATCGCTGGGAgtccggattactgtagtgtcCTATCTTGGCCGACGGACTATCCCGCATCGGATGGTGTGCATAGTAGCGAC---------GACG------------GCGGCTG--CGTCCTGCTGACGGGCCCCCAGcttcaa
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig15   257546 169 -  1794024 TCAAGTGGAGGAAGACAAAGTACCTTGCAATCTGGTCTATTCCCAGCATCGCTGGGGGGACAGATTCCTGTAGTGTCCTATCTTGGCCGACGGACTATCCCGCATGTGATGGTGTGCATAATGGCGGTTCGTGGTGAGACG--------------GGTGG--GGACCTGCTGTTG-----CCTGCTGCAG
i caeRem4.Crem_Contig15 I 115 C 0
s caeSp111.Scaffold582    282677 158 +   484378 TCAAACTG---------AAGTACCTTGCAATCTGGTCTATTCCCAGCATCGCTGGGGGGACAGATTCCTGTAGTGTCCTATCTTGGCCGACGGACTATCCCGCATGTGATGGTGTGCATAATGGCGGT------CGTGGCA------------AGGAGGGTTGGACCTGCTGTTG-----CCGGCTGCAG
i caeSp111.Scaffold582  I 14 C 0
s caePb3.Scfld02_0       3417422 165 -  4147112 TCAAGCTGAAGAAGACAAAGTACCTTGCAATCTGGTCTATACCCAGCATCGCTGGGGGTACGGTATCCTGTGCTGTCCTATCTTGGCCGACGGACTATCCCGCATGAGATGGTGTGCATACTGGCGAG------GGGGGCG------------AGGAGTG--GGACCTGCTGTTG-----CCGGCTGCAG
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18213   554270 161 +   720316 -------taaaattttaaagtacCTTGCAATCTGGTCTATGCCCAGCATTGCCGGGGGGTCAGCTTTGCGTGGTGACCTATCTTGGCCGACGGACTATCCCGCAAATGATGGTGTGCATAATGGCGTC--GTGAGAGGGGG------------AGGGTGG--GGACCTGCTGTTG-----CC-GCTGCAG
i caeJap4.Scaffold18213 C 0 C 0

a score=336.000000
s ce10.chrX              2731549 26 + 17718866 CTCACACTGGGCGAAggggaggaagg
s caeRem4.Crem_Contig15   257715  5 -  1794024 CTCTC---------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    282835  8 +   484378 CTCTCACT------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417587  8 -  4147112 CTCTCACT------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   554431  8 +   720316 CTCTCACT------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17481357 18 - 21540570 I

a score=207554.000000
s ce10.chrX              2731575 293 + 17718866 ggggggggggggggggggATAACTGAGT-GAGGCGCTGATCCACCGTGGGGGGCTGGGTTTCGCGAGTTTTTGAAAAT--GGGAGGCGGGTGCCCACGTC--------------AAAGTCTTACTTCCAAGTC-------------------GAGTAGT---CAAGATCAATAGACGAGG--------------GAGAAGAGGGGGAGGAGAAGGCAAGGCAGTAGTGGCTAGTTGCT-GGCAGCTCGCA--CGACAACCACGCTATAGG---CAAAAAGGGGAGG--GCACAAACGGCCGAGT----CACTCATTGGAAG--GATG-------TACACGAATAGATAGATATGTTTTAATATACAT
s cb4.chrX              17481375 321 - 21540570 ggGGTTCTGGGCGGGAGGATAACGGAGT-GAGGCGCTGATCCACgggggggggTTGGGTTTCgcgagtttttcaaaaa--tggaggcGGGTTTCCACGTCAGGGGGCCTCCCGAAAGGCACTAGGTGTGAGACTGTTTCAAATAGAGAGACCGAGGggg---cgagaagaagaagaagaa--------------gaagaag----aggaagaaggcgATGC---AGAAGCTAGTTGGCAGGCAG--CTCC--CGATAGAGAAG-GATGCA---TCTAGAGGCGAGG--GCCCAAACGACTAAGT----CAGTCATTGGAAG--GATGATGCGCCTTCAGAAATAAAAGGATATAAACATGCATT---
i cb4.chrX              I 18 I 3242
s caeRem4.Crem_Contig15   257720 276 -  1794024 -------TGGGAGGGAGGATAACTGAGT-GAGGCGCTGATCCAC---GGGGGGCTGGGTTTCgcgagtttttgaaaat--gggagGCGGGTGTCCACGTC--------------AAAGTCTTACTTGGGAGTC----------------GTCGAGTAGG---CGAGATCAATAGGAgagg--------------gagaaaa----gagaagaaggaaatgc---aGTGGCTAGTTGTT-GGCAGCTCTCC--CGACAACGACGCTATAGG---CGAAAAGGGGAGG--GTACAAACGACTAAGT----CACTCATTGGAAG--GATG-------TACACGAATAGATAGATATGTATAAACATT---
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    282843 277 +   484378 --------GGGAGGGAGGATAACTGAGTGGAGGCGCTGATCCAC---GGGGGGCTGGGTTTCgcgagtttttgaaaat--gggagGCGGGTGTCCACGTC--------------AAAGTCTTACTTCCAAGTC-------------------GAGTAGT---CAAGATCAATAGACGAGG--------------GAGAAGA---GAGGGGGAAGGCAGTGC---AGTGGCTAGTTGCT-GGCAGCTCGCC--CGACAACGACGCTATAGG---CAAAAAGGGGAGG--GCACAAACGGCCAAGT----CACTCATTGGAAG--GATG-------TACATGAATAGATAGATATGTATAAACATACAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417595 313 -  4147112 GGGACTgggggaggggggATAACTGAGT-GAGGCGCTGATCCAC----GGGGGCTGGGTTTcgcgagtttttgaaaat--gggaggCGGGTGTCCACGTC--------------AAAGTCTTACTTCCAAGTC-------------------GAGAAGTACGAGAGATCAATAGACGATGAGAGaccagagaaagagagaa---taacGGAAAGGCGGTGCAGTAGTGGCTAGTAGCT-GGCAGCTCTCCGACAACGACAACGCCATAGG---CAAAAAGGGGAGGGAGCTCAAACGGGCAAGTCAGCCACTCATTGGGAGAAGATG-------GACTTTAATAGATAGATATGTATAAACATACAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   554439 280 +   720316 ----AGGAGGGTGTGGGGATAACTGAGT-GAGGCGCTGATCCAG------GGGTTGGGTTTCGcgagtttttgaaaatggggGAGGCGGGTGTCCACGTC--------------AAAGTCTTACTTCCAAGTC-------------------GAGTAGT---CAAGATCAATAGACGAGG--------------GAGGAGA-----GGGGGAAGGCAGTGC---AGTGGCTAGTTGCT-GGCAGCTCGCC--CGACAACGACGctataggaaaaaaaaaggggagg--gCACAAACGGGCTAGT----CACTCATTGGGAA--Gatg-------tacacgtatatatatagatatacttatatgtat
i caeJap4.Scaffold18213 C 0 I 318

a score=273.000000
s ce10.chrX              2731868 1 + 17718866 T
s caeSp111.Scaffold582    283120 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417908 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554719 318 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeRem4.Crem_Contig15   257996 4 -  1794024 I

a score=22722.000000
s ce10.chrX              2731869 206 + 17718866 CGAGCATCCCTAATTGTCTGGATAAATCTCT-ATTTTCGACACAGACACATTCACACAAATTGTGCATACGCA-CCTCACAAGG----AAATAAAGAATAAAGACAAAACGTGCCCCCCCCCCCCCCACTCCTCACCGCTTATAAATCTCACT-CTCTATTCCACTCTCT---ACCC-ACACTATTTTTTCCCATGAAGCGCTGTCCATCAGCCTAC
s caeRem4.Crem_Contig15   258000 171 -  1794024 CAAACATCTTAATAATCAAGGACG----TCC-CTTTTCGGCAC-GCCACATGCA------------GCACGCA-CTTCACCGTC----AAA-AAAGAATCAAGACAAAAAGTGTC---------------CCTCACCGCTTATAAATCTGCCCCCTCTCTTCCactcacacacacac-acactcttCCCTTCTA------ACTCTCTACCAGTCCAC
i caeRem4.Crem_Contig15 I 4 I 134
s caeSp111.Scaffold582    283121 147 +   484378 CCAAtatcttaatttttcaggaca----TCCACTTTTTGACAC-GCCACAT---------------GCACGCACCCTCGCaaccaacaaaa-aaagaataaagac-AAAAGTGTG---------------TCTCACCGCTTATAAATCTGTCT---CTCTTCAACT-------ACTC-ACACT--------CTA------GCTGTCCAC--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3417909 149 -  4147112 CGAATATCTTAATTTTGCAGGACA----TTT-CTTTTCGGCAC-GCCATTC---------------GCACGCA-CCTCAcaacc----aaa-aaagaatgaagac-aGAAGTGCC---------------GCACACCGCTTATAAATCTGTCC---CTCTTCAACT-------ACGCTGCACTCTT-CCTCCTA------GCTCTCTAC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554719 318 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I

a score=-995.000000
s ce10.chrX              2732075 153 + 17718866 TACATG-ATGAAAAAGCAATATTGTCTAATTTTAATGC-TTGGCCCAGTACATTGCCCACTAGTTATCTTCATTATCCACCCACCTGCTACAGGTGCACACCATAATTATGTATTCTCAATGCCTTTCTCCGTTT-----TTCTCGATAGACAGAGAAA----G
s caeSp111.Scaffold582    283268 139 +   484378 TATGCTCACCATAAAACACCACCGCCTAGTTTG------TTATTTTGGTGCACTGACCACTGGATATTATAATTA---ATCCACCTGTT-CGGATGTGTTC--TAATTACA-------------TCTCTCCATTTGAAAGTCTTATCTAAATCGAAAATCCCTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3418058 150 -  4147112 TGCCTGCAGCAGGAAACACCACTGGCTAATTTGCATCTTCTTCTCTGGTGCTCTAACCAGCtgctttcttgattt---tctcacATTCT-CAT-TGCACTT--GAGTTATGAGAACTCTATa-ctcgttcttttt-----tcttttcttcaaaagaaattcc-a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554719 318 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeRem4.Crem_Contig15   258171 134 -  1794024 I

a score=5460.000000
s ce10.chrX              2732228 21 + 17718866 AAATCTTATTCTCTCCCAG--TT
s caeRem4.Crem_Contig15   258305 22 -  1794024 AAATCTTATTCGCT-TCAGTTTT
i caeRem4.Crem_Contig15 I 134 C 0
s caeSp111.Scaffold582    283407 20 +   484378 AAATCTTATTCTCG-CCAG--TT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3418208 19 -  4147112 aaatcttaTTCTT--TCAG--TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   554719 318 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I

a score=26566.000000
s ce10.chrX              2732249 81 + 17718866 CGTTTTCGTTAAACAACG----ACGAA--ACGAATTCCGTAGGGACTT-TGAAATGT-GAA-AAGGATATCAATCTTGAATTTCACAATT
s caeRem4.Crem_Contig15   258327 79 -  1794024 CCGCTAACCACAACGAC------CGAA--ACAAGTCCCG-GGAGACTT-CGAAACGTGGAA-AAAGATATCAATCTTAAATTTTACAATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    283427 79 +   484378 GTTCCCAGAACCACAAC------CAAG--ACAAGTCCCA-AGAGATTT-CCAAACGTAAGG-AAGGATATCAATCTTGAATTTTacaatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3418227 79 -  4147112 CCAACTAGTTCTACGAC------CGAA--ACAATTCCCA-AGAGACAT-CGAAACGTGGAA-AAGGATATCAATCTTGAATTTTACAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   555037 89 +   720316 CACTTTCATGAGTCGATGCAGAACGAACCACAATTCCCA-TGAGAAACGCCAAACGTGGAATAAGGATATCAATCTCAAACTTCACAATT
i caeJap4.Scaffold18213 I 318 I 817
e cb4.chrX              17481696 3242 - 21540570 I

a score=375.000000
s ce10.chrX              2732330 10 + 17718866 TTCTCTACGC
s caeRem4.Crem_Contig15   258406 10 -  1794024 CTCCCTCCAC
i caeRem4.Crem_Contig15 C 0 I 1153
e caePb3.Scfld02_0       3418306  0 -  4147112 C
e caeJap4.Scaffold18213   555126 817 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeSp111.Scaffold582    283506  0 +   484378 C

a score=2822.000000
s ce10.chrX              2732340 13 + 17718866 CTTCCTTCACGTG
s caeSp111.Scaffold582    283506 13 +   484378 cttcttccacgTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3418306 13 -  4147112 CGTCTTCCACGTG
i caePb3.Scfld02_0      C 0 I 3922
e caeJap4.Scaffold18213   555126 817 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeRem4.Crem_Contig15   258416 1153 -  1794024 I

a score=121.000000
s ce10.chrX              2732353 19 + 17718866 TGC-------TTTG---AGAGTACTACGG
s caeSp111.Scaffold582    283519 29 +   484378 AGCAGAAGAACTTGCCAAAAGTGCTACGG
i caeSp111.Scaffold582  C 0 I 1361
e caePb3.Scfld02_0       3418319 3922 -  4147112 I
e caeJap4.Scaffold18213   555126 817 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeRem4.Crem_Contig15   258416 1153 -  1794024 I

a score=0.000000
s ce10.chrX              2732372 2168 + 17718866  
e caePb3.Scfld02_0       3418319 3922 -  4147112 I
e caeJap4.Scaffold18213   555126  817 +   720316 I
e cb4.chrX              17481696 3242 - 21540570 I
e caeSp111.Scaffold582    283548 1361 +   484378 I
e caeRem4.Crem_Contig15   258416 1153 -  1794024 I

a score=100.000000
s ce10.chrX              2734540 1 + 17718866 C
s cb4.chrX              17484938 1 - 21540570 C
i cb4.chrX              I 3242 C 0
e caePb3.Scfld02_0       3418319 3922 -  4147112 I
e caeJap4.Scaffold18213   555126 817 +   720316 I
e caeSp111.Scaffold582    283548 1361 +   484378 I
e caeRem4.Crem_Contig15   258416 1153 -  1794024 I

a score=-746.000000
s ce10.chrX              2734541 30 + 17718866 -------------ATTTCCAAAAATCAGATTAGACTAAAATGA-
s cb4.chrX              17484939 26 - 21540570 -------------ATATTCAAAACCC----TCAATCAAAATGA-
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold18213   555943 37 +   720316 ATTGCACAGAGCCAGATTTAAAAGTC----TAA---AAAATATC
i caeJap4.Scaffold18213 I 817 C 0
e caePb3.Scfld02_0       3418319 3922 -  4147112 I
e caeSp111.Scaffold582    283548 1361 +   484378 I
e caeRem4.Crem_Contig15   258416 1153 -  1794024 I

a score=54.000000
s ce10.chrX              2734571 1 + 17718866 T
s cb4.chrX              17484966 1 - 21540570 A
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   259569 1 -  1794024 T
i caeRem4.Crem_Contig15 I 1153 C 0
s caePb3.Scfld02_0       3422241 1 -  4147112 T
i caePb3.Scfld02_0      I 3922 C 0
s caeJap4.Scaffold18213   555980 1 +   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    283548 1361 +   484378 I

a score=91385.000000
s ce10.chrX              2734572 95 + 17718866 TACCTGTCTCTTCTCTTCCACATATAACTGTAGTACAATAAGGTGAATGTATCGGGTTTTCGGTACGCTTTTTTATAATCCGGTGCCATTTTTTC--
s cb4.chrX              17484967 95 - 21540570 AACCTGTCTCTTCTTTTCCACATATAACTGTAGTAGAGTAATGTGAATGTATTGGGATTTCGATACGCTTTCTTGTAATCCGACGGCATGATTTC--
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   259570 95 -  1794024 TACCTATCTCTTCTCTTCCACATATAACTGTAGTAGAGTAATGCGAATGTATTAGGTTTTCGATACGCTTGCTTATAATCTGGAGCCATAATTTC--
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    284909 94 +   484378 TAcctatctcttcttttccccaTATAACTGTAATAGAGTAGTGTGAACGTATCAGGTTTCCGATACGCTTTCTTGTAATCCGGAGCCATGATAT---
i caeSp111.Scaffold582  I 1361 C 0
s caePb3.Scfld02_0       3422242 94 -  4147112 TACCTATCCCTCCTTTTCCACATATAACTGTAGTACAGTAATGTGAAAGTATCGGGTTTCCGATAAGCTTTCTTGTAATCTGGAGCCATTATTC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   555981 95 +   720316 CACCTATCTCTTCTTTTCCACATATAACTGTAGTACAGTAATGTGAAGGTATTTGGTTTCCGATAGGCTTTTTTGTAATCTGGcgtcat--tttcaa
i caeJap4.Scaffold18213 C 0 C 0

a score=-6678.000000
s ce10.chrX              2734667 44 + 17718866 AAGTACTGATGCGTGGAAATGGAAAAATAGAAAAGACAAAATA------T-
s caeRem4.Crem_Contig15   259671 31 -  1794024 ----------------AAACAGTAATAG--AATGAATGAATAGTGAAGA--
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    285003 30 +   484378 --TTGTT---------AAACAGTCGAAT--AAAGTATAAAATA--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3422336 30 -  4147112 --GTTCT---------AAATAGTAAAAT--AAAGTGTAAAATA--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   556076 35 +   720316 -------aaaaaaaaaaaaaactaatag--aaaaaattgaata-------a
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17485062 22 - 21540570 I

a score=114865.000000
s ce10.chrX              2734711 264 + 17718866 --------AGGTTGGAAGTTCGG-----ACCACTTAGTGGGTGACCGAATGAGACGTGTTGGCAGAAG--CCAAAATG-TGGTGAGATAGTAAATTGGAAGAGCCG-GACA--AGAGCAAGTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTT---GCTGCATTTCCAG--TTGG--CGGGAGA-------------------------CCTTTTTC---------CCTTTTTCTTTTCCTCTCTTCCTTGGCCTCTCTTTTTACAATTCCAAAATCCTCTAATGCACTCCTGC----TTTCTACAGTAGTAAATTAAG-
s cb4.chrX              17485084 242 - 21540570 ---------------AGGTTAGG-----------------GTGACCACAAGAAATGGGGTGGTGGTAGACCCAAAACG-TGA---AATCGCGAATTGGAAGGACCGAGGCGA-AGAGCAAGTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTT---GCCGTGTTTTCAGAAGAGG--gcgaaaaggaaaagaaacatGGATAGATGGGACCTCTTA-----------CGTCTTT--------------------TCTCTATCTACGA------------CTAATGCACTCCAGTAAGACGACTACAGTGGTAAAT-GAG-
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   259702 252 -  1794024 ----------ATAGAAAGTTCGG-----ACCACTTAGTGAGTAGCCGAATGCAATGGGTTGGAGGTG---CCAAAATG-TGG---GATAGTAAATTGGTAAAGCTG-GACG--AGAGCAAGTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTT---GCTGCATTTCCAG--TCgg--tagagaaagaaagaggacat------------tctctct-----------ctttttcgttaTATTCCAAAATCG---TCTCTCTTTATTG------------CTAACGCAATCCTG-----CTACTATTGCAGTTAAT-Gag-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    285033 213 +   484378 -------------GAAAGTTCGG-----ACCACTTAGTGGGTGACCGAATGAAATGTGTTGGCAGTG---CCAAAATG-TGG---GATAGTAAATTGGAAGAGCCG-GACG--AGAGCAAGTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTT---GCTGCATTTCCAG--TCGA--GAGACGAAGAA---------------------tcgcct--------------ttttc--------------------tctc------cgg------------CTAATGCACTCCTGC----CTACTACAGTAGTAAAT---G-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3422366 226 -  4147112 -------------GGAAGTTCGG-----ACCACTTAGTGGGTCACCCAATAAAATGGGTTTGCGGTG---CCAAAATG-TGG---GATAGGAAATTGGAAGAGCCG-GGCA--AGAGCAAGTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTT---GCTGCATTTTCAG--TCAGTTGAGAAAAGGGT---------------------ccgttt--------------ttctc--------------------tatctctc-acGA------AATC--CTAATGCACTCCTGC----TTACTACAGTAGTAAAT-GAG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   556111 248 +   720316 agtAACAGTGAGCAGAATTTTGGCTTTCACAACTTGGTTAGTAG----GTAATGTGTGGTGGCTTCA---CTAGAATGCCGG---GATAGTAAATTGGAAGAGCCG-GACGAGAGAGCAATTGTCAAAAACAATCATCCAATTGTATAATTTGACGCGATTTGCCGCTGCGTTTCCAG--TTGG--AAGACAA-------------------------CCTTTTACTCTCCAAAATCGTTTTC--------------------TGTCTGTC-----------------CTAATGCACTTCCAAA---CTGCTACAGTAGCAAAT-AAAG
i caeJap4.Scaffold18213 C 0 I 2515

a score=29451.000000
s ce10.chrX              2734975 164 + 17718866 CGTACAATTGTGTC-GGGACAGCAGAAAAAAATCGCCATTTTTCTCTCCTGACAAGCTGGCTCTAGAACAATAATGGCAGTTTCTGTTGG-----CGTTCGTTCACGAACAAGAATCATATATTCATGTC-TCGTC--TTTTGAACACGACGCTATGAA------TGGTATCGCTAATA
s cb4.chrX              17485326 158 - 21540570 AGAGGGTTTTTTC--GGAACAGGAGAACAAGAGAGCAAT------------ATGCTATAGCTACACAATAATAATCG----TCTTCTTGGGTTTACGTGTGTTCACAACCGC-AATCATATATTCATGCCGTCGTC--TTTTGAAAACGATGCTATAGATCTTAATGGTATGTATCACT
i cb4.chrX              C 0 I 494
s caeRem4.Crem_Contig15   259954 146 -  1794024 cgaaaaaatttt---ggaacgGGAAAAAATGCTCGCCG--------------------AGAAACAGAACAATAATCG----TTTTCTGGGGTT--CATGTGTTCAATAGCAT-GATCATATATTCATGTC-TCGTC--TTTTGAAAACAATGCTATAGATATATATGGTATCCCTAAAT
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    285246 140 +   484378 AGcagatttttcttcaaaat--------atgcTCGTC----------------------TTGACACCGcaataattg---tttttggttGGTT--TACACGTTCACAAGCAC-AATCATATATTCATGTG-TCGTC--TTTTGAAAACGACGCTATGAATCTTTTTAGTATCACTAATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3422592 152 -  4147112 AGaggattttttccagaaatgggACAAAAGGCTCGTCA--------------------AACAGCACGACAATAATCG---TTTTTCTGGTGTA--TACGTGTTCACAAGCTC-AATCTTATATTCATGTG-TCGTCTTTTTTAAATACAGAATTGTGAATTGCTATGGTATCACtaata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   556359 2515 +   720316 I

a score=-3250.000000
s ce10.chrX              2735139  9 + 17718866 TGAAATATA------
s caeRem4.Crem_Contig15   260105 15 -  1794024 TGATGCATTGATTTA
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    285386  2 +   484378 -GA------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3422744  9 -  4147112 -aaaagaata-----
i caePb3.Scfld02_0      C 0 I 458
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I

a score=1630.000000
s ce10.chrX              2735148 32 + 17718866 -GGAACAA----------CAAAATAGAAAACAATAGGCAAACA
s caeRem4.Crem_Contig15   260120 32 -  1794024 agaaatag-----agatg------aaacaacaacaagaaaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    285388 42 +   484378 -GAAACGATTTTTAGatgcaaaacaaaaaataacaaaaaaaca
i caeSp111.Scaffold582  C 0 I 102
e caePb3.Scfld02_0       3422753 458 -  4147112 I
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I

a score=100.000000
s ce10.chrX              2735180 1 + 17718866 G
s caeRem4.Crem_Contig15   260152 1 -  1794024 g
i caeRem4.Crem_Contig15 C 0 I 216
e caePb3.Scfld02_0       3422753 458 -  4147112 I
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I
e caeSp111.Scaffold582    285430 102 +   484378 I

a score=0.000000
s ce10.chrX              2735181 846 + 17718866  
e caePb3.Scfld02_0       3422753 458 -  4147112 I
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I
e caeSp111.Scaffold582    285430 102 +   484378 I
e caeRem4.Crem_Contig15   260153 216 -  1794024 I

a score=94.000000
s ce10.chrX              2736027 25 + 17718866 CtaatattaattaaaaaaaaaaCGG
s caeRem4.Crem_Contig15   260369 22 -  1794024 CCAACgttattttattaaaaca---
i caeRem4.Crem_Contig15 I 216 C 0
e caePb3.Scfld02_0       3422753 458 -  4147112 I
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I
e caeSp111.Scaffold582    285430 102 +   484378 I

a score=48.000000
s ce10.chrX              2736052 5 + 17718866 TTAAC
s caeRem4.Crem_Contig15   260391 3 -  1794024 --aaC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3423211 5 -  4147112 TTCAG
i caePb3.Scfld02_0      I 458 C 0
e caeJap4.Scaffold18213   556359 2515 +   720316 I
e cb4.chrX              17485484 494 - 21540570 I
e caeSp111.Scaffold582    285430 102 +   484378 I

a score=1146.000000
s ce10.chrX              2736057 2 + 17718866 CA
s caeRem4.Crem_Contig15   260394 2 -  1794024 CA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3423216 2 -  4147112 CA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   558874 2 +   720316 CA
i caeJap4.Scaffold18213 I 2515 C 0
e cb4.chrX              17485484 494 - 21540570 I
e caeSp111.Scaffold582    285430 102 +   484378 I

a score=-1294.000000
s ce10.chrX              2736059 1 + 17718866 -T
s caeRem4.Crem_Contig15   260396 1 -  1794024 -T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    285532 1 +   484378 -T
i caeSp111.Scaffold582  I 102 C 0
s caePb3.Scfld02_0       3423218 1 -  4147112 -T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   558876 1 +   720316 A-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17485484 494 - 21540570 I

a score=288450.000000
s ce10.chrX              2736060 341 + 17718866 ACCTTGGTAAGGCTGGCCAAACAGCCATCTGAACCGCTTCTTTTATCATTTCGCCGGGTCTTGGCGTGCGAATTTCAAAAAGGCGGTCATTTATTGAAATTTTTCTAGGATGTATCGGCGATGGTATAATTTCCGATGCGGCGATTGGTATCATCCATGGCTGTAATCGATCGAGTGATGGTAAGAGCCTCGAGACGGAACCATTTGGCTTGGAGCCACT---------GGCACCGTCGCCGTCGTTTCCCATACAGGAGTCAAACTGCTCCAGCAGTTTT-----CGACTCAAGGCAA---CATAACAATGGTTGGCA----TTTCGAGAGAAAGAG----AGATGACAACGATTTGA-AGATCTA
s cb4.chrX              17485978 356 - 21540570 ACCTTGGTAATGCGGGCCATACTGCCATCTGCACCGCCTCTTTGATCATTTCACCCGGCCGGGGTGTTCGAACTTCAAACAGTCGATCATTGATGGAAATTTTTCGCGGCTGTATCGGGGATGGTATGATTTCTGATGCGGCAATCGGAATCATCCATGGTTGTAAACGATCAAGTGATGGTAGAAGCCAAGTGACCGAGCCATTCGGCTGTGATGAGGCGCCAGCAGCGGCACCATCACCGTCGTGTCCCATACAGGAGTCAAAATGCTCCC-GAGTGAC-----CAACTCAAGGCCGTGTCATCAAAAAGATTGGCATGATTTTTGCGGGGAGTTTA---GAGTAA-AGGGGTCTGA-ATTTATA
i cb4.chrX              I 494 I 24
s caeRem4.Crem_Contig15   260397 352 -  1794024 ACCTGGGCAGAGCTGGCCATACTGCCATCTGAACCGCTTCTTTTATCATCTCACCCGGTCTTGGAGtgcgaatttcaaaaagacgATCattgatggaaatttttctAGGCTGAATCGGTGATGGTATAATTTCCGAGGCAGCAATTGGTATCATCCATGGTTGTAAACGATCGAGTGATGGTAATAGCCTAGTGACTGAGCCATTCGGCTTTGAGCCACTGGCGCCACCGGCACCATCACCGTCGTGTCCCATACAGGAGTCAATATGCTCCA-CAGCTCCTGCTGTACCTCAAGGACG---CATGGCGTAAGTTGACA----TTTAGATGGAAG---A---AAATGACAACGGTTTGA-AGATCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    285533 357 +   484378 ACCTTGGCAGAGCGGGCCACACCGCCATCTGTACTGCTTCTTTAATCATTTCGCCTGGTCGTGGGGTtcgtatttcaaaaagacgGTCAttaattgatatttttctaggCTGTATAGGTGATGGTATAATTTCTGAAGCAGCTATGGGTATCATCCATGGTTGTAAACGATCAAGTGATGGTAAAAGCCTAGTGACAGAGCCATTAGGCTTAGAACCACTGGCGCCAGTGGCACCATCGCCGTCGTGTCCCATGCAGGAGTCAAGAAGCTCCA-CTGCTCCTGCTCCAACTCAAGGCCA---TATGGCGTAAGTTGGCA----TTTGGGTGGAGAGGAT-GGAaatgacaactttttga-tgatCTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3423219 355 -  4147112 ACCTTGGTAAAGCTGGCCACACAGCCATCTGAACTGCTTCTTTTATCATTTCGCCCGGTCTTGGAGtgcgaatttcaaaaaggcgGTCATTAATTGAGATTTTCCTAGGTTGTATCGGTGATGGTATAATTTCTGATGCAGCAATAGGTATCATCCATGGTTGTAAACGATCAAGCGATGGTAAAAGTCTAGTGACGGAGCCATTCGGCTTGGAGCTACTGGCGCCGATGGCACCATCGCCGTCGTGTCCCATGCAGGAGTCAGAATGCTCCA-CAGCTCCTGCTCCAACTCAAGGCCA---TATGGCGTAAGTTGGCA----TTTAGATGGAGAGGGT---AAATGACAACGGTTTGA-agatctg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   558877 357 +   720316 ACCTGGGTAAAGCAGGCCAGACTGCCATTTGAACCGCCTCTTTTATCATTTCACCCGGTCTCGGAGTTCGTATTTCAAACAACCGGTCACCAATGGATATTTTTCTTGGTTGAATGGGAGATGGAATAATTTCCGACGCGGCGATTGGTATCATCCATGGTTGCAAACGATCAAGCGATGGTAGGAGCCTTGCGACGGAGCCATTAGGCTTTCCGCCACCGGCGCCACTCGCACCATCGCCGTCGTGTCCCATGCAGGAGTCAAGATGCT-CA-CTGCTCA-GTGCCAACTCAGATCCG---CATACCAGAAGTTGGCA----TTTAAATGGCAAATATGGGACGGGGAGACGGTTTGAGAAAGCTG
i caeJap4.Scaffold18213 C 0 C 0

a score=1034.000000
s ce10.chrX              2736401 24 + 17718866 AAT-GTCAAGTTCCATGATATTGTC
s caeRem4.Crem_Contig15   260749 20 -  1794024 AAT-ATCAAGT----TAATAGAAAA
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    285890 21 +   484378 AATGTTGGAAT----TGATagtgaa
i caeSp111.Scaffold582  C 0 I 8
s caePb3.Scfld02_0       3423574 20 -  4147112 aat-ttcaaat----tgatagTGAA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   559234 13 +   720316 AAT-GTCAAAT----TCT-------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17486334 24 - 21540570 I

a score=59603.000000
s ce10.chrX              2736425 138 + 17718866 AAAGAAAGTTTGAAGGAAAT--GAAGAAAAACAAGTAGTCAG-AATGTGAGTAGAATAAAAATGAGAAGTATGTACCAGAAGTGAAA----------ATGA---TTACATCGCACACTCCTATCTCTTTCTTTTCCGACATCTGGTCATTTGCC
s cb4.chrX              17486358 119 - 21540570 ggagaaaatgaaggagggatgagaaagttactgga---agaa-aaTGTGAGTGgaataaaaatgagaa----gtACCAGAGGCAAAA----------ATGA---TTACATCCGATACCACAA--------------GACATCTGGTCATTTGCT
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig15   260778 114 -  1794024 AAAGAAGTTG--GGAGAAAT--GAAGGCTACTCGAAG-AGAA-AATGTGAGtggaataaaaatgagaa----gtaCCAGAAGCAAAA----------ATGA---TTACATCCT---CTACTA--------------GACATCTGGTCATTTGCT
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582    285919 117 +   484378 aaagagaaggagaataAGTT--GAAGGTTACTGGATGCAGAA-AATGTGAgtggaataaaaatgagaa----gtactcgaatcaaaa----------atga---tcacATCCT---CCACGA--------------GACATCTGGTCATTTGCT
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3423599 113 -  4147112 ----aggaggaaaagaagtt--gaagtttactgaaatgagaa-aatgtgagtggaataaaaatgagaa----gtaCTAGAAGCAAAA----------ATGA---TTACATCCT---CCACAA--------------GACATCTGGTCATTTGCT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   559247 130 +   720316 -GAGAACGATGAATCGGGAT--AAAGAAAGAGGGAATGAGAAGGATGTGAGaagaataaaaatttgaa----gtaCAAGGAGAAAAAGCAGAAGAAGATGAGCTCCATTTCTG---CTTCTT--------------CATATCTACTCATCTGCC
i caeJap4.Scaffold18213 C 0 I 741

a score=31968.000000
s ce10.chrX              2736563 69 + 17718866 AGGGATAGCC---AAAAAAAATTATTAAGAAGCT---------CCAGAACTTGCGGGGTTGAA-CTTTTTTATTACTTGACC
s cb4.chrX              17486477 73 - 21540570 GGTGG-GGAGG--GGAAAAAATTATCAAGATGCTTTGAGAAGACAAGAACCT-----TGCGTC-TTTCTTTATTATATGACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   260892 79 -  1794024 AGCAAtggcca--aaaaaaaattatgaagaagCTTTGAGGAGACAAAAATTTGTGGCTCGGAC-tttttttATTACATGACC
i caeRem4.Crem_Contig15 C 0 I 107
s caeSp111.Scaffold582    286036 78 +   484378 GGCGATggtc---gaaaaaaattatgaagaagCTTTGAGACGACAAGAATTTGTGGCtcgaac-tttttttattacaTGACC
i caeSp111.Scaffold582  C 0 I 57
s caePb3.Scfld02_0       3423712 82 -  4147112 AGTGATGgtcggagaaaaaaattatgaagaagCTCTCAGACGACAAGAATTTGTGGCTcggacttttttttgttacatgACC
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18213   559377 741 +   720316 I

a score=967.000000
s ce10.chrX              2736632 52 + 17718866 ACGTCAGGGCTTACAAGG-AAGAATAAT-------GAAATAATTTGAATTTGTCAAAAGA
s cb4.chrX              17486550 49 - 21540570 ----CTGAGTCCTTACGACAAAGCTAAT-------GAACTTATaccaaataaaaaaagga
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3423798 59 -  4147112 AAGTTGGTACCCTCACga-aaaactgatatcagaaaaaatagaattagtttgaaaaagga
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18213   559377 741 +   720316 I
e caeSp111.Scaffold582    286114 57 +   484378 I
e caeRem4.Crem_Contig15   260971 107 -  1794024 I

a score=197.000000
s ce10.chrX              2736684 7 + 17718866 TACTTTT
s cb4.chrX              17486599 7 - 21540570 gACCTCT
i cb4.chrX              C 0 I 85
e caePb3.Scfld02_0       3423857 0 -  4147112 C
e caeJap4.Scaffold18213   559377 741 +   720316 I
e caeSp111.Scaffold582    286114 57 +   484378 I
e caeRem4.Crem_Contig15   260971 107 -  1794024 I

a score=0.000000
s ce10.chrX              2736691 439 + 17718866 TCTGTAAAATATTTAGTATTCGAAATATCATGCTTTTTATCAAATTTATTTTCAAAAAGGAGTAGCACAAATAGGGGAATAGACGGTACTTCATCTATCAGTATTTCGAAATATTTTTCAACTTCTACAGCTTATATTTCAGTTGTCGTGCAATTTTGTTGTAAAATGACAAAACACTTAAAAAAAAAAATAAATGACATAATCCTGAGATGCCCGAAAATCATGCCAAACTTTTCAAATTATTTGGACGTTATTTTAAGTTTACAGTCAAAAAGGCGCAGTCTGCCGAAAAGCGGTAATTTTTTTCTACAGGTGTATTTTTTTTGAAAATATAGTATATAGTATAGTACAATTAAAAATTGTATTGTAGTATTGTTTTGAATTTATTTTTGAAAAATTTCGAAAAAGATTATACATATTTCTATAACCTCTCCGCTCC
e caePb3.Scfld02_0       3423857   0 -  4147112 C
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486606  85 - 21540570 I
e caeSp111.Scaffold582    286114  57 +   484378 I
e caeRem4.Crem_Contig15   260971 107 -  1794024 I

a score=711.000000
s ce10.chrX              2737130 27 + 17718866 GGACAAAAAATATTATTTCGAACAGAC
s caeSp111.Scaffold582    286171 23 +   484378 gggcgaagaaaaata----gaatagac
i caeSp111.Scaffold582  I 57 C 0
e caePb3.Scfld02_0       3423857  0 -  4147112 C
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486606 85 - 21540570 I
e caeRem4.Crem_Contig15   260971 107 -  1794024 I

a score=-758.000000
s ce10.chrX              2737157  8 + 17718866 AAGTAGCT----
s caeRem4.Crem_Contig15   261078  8 -  1794024 aagaagaa----
i caeRem4.Crem_Contig15 I 107 C 0
s caeSp111.Scaffold582    286194 12 +   484378 aaaaataaaaca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3423857  0 -  4147112 C
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486606 85 - 21540570 I

a score=16226.000000
s ce10.chrX              2737165 83 + 17718866 GGAGAAAAAAAACG-ACGAAGTTCCTATTTCTGCATTCT----------AAAATGTGACAATGTGGTTGCACCAGTTCGATTCAGCTCAA-TTCA
s caeRem4.Crem_Contig15   261086 84 -  1794024 aaaggaaaacaaaa-acgaagttcttttttttc--ttcttcttttttttcaatt----caatgtAGTTGCTTTAGTTCAATTCAGTTCAAT----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    286206 74 +   484378 gaagaagagaaaacaacgaAGTTCTTCTTGTCT--TTCT----------CAATT----CGATGTAGTTTCTCTAGTTCAGTTCAGTTCAA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3423857 75 -  4147112 gaagacaaaaaaac-acgaagttctcttttttt--ttctac--------aaatt----caATGTAGTTGCTTCAGCTCAGTTCAGTTCAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486606 85 - 21540570 I

a score=80346.000000
s ce10.chrX              2737248 156 + 17718866 TTGTGCTCAAAAAGGCGTGAATTTCTATTTTGCCGTGAGAGCAAGGCACTCATCAGATGAGTTTAAAATGCATACATTTTTTATAGAGAACATTCACACACTT-------TTTGGAAAAAATTGAACAAACGAAAATGGAAACGTGAG--CAAAAGTTGAAGTTT
s cb4.chrX              17486691 138 - 21540570 TCATGCTCAAGAAGGCGTGAACTTCT-ATTTGCTCTGAGAG---------CATCAAATAAGTTTAAAATGcatacattttttatattgaaCATTCACACAC---------CATG---AAAATTGTTC-CTCC--GTTTGAAACACGAG--CAAAAATTGGAGTTT
i cb4.chrX              I 85 I 408
s caeRem4.Crem_Contig15   261170 155 -  1794024 --GTGCTCGGAAAGGCGTGAATTTCT-TTCTGCCGTGAGAGCAGAGCACTCATCAGATGAGTTTAAAATGcatacattttttatattgaacacacacacacacacacacacacg---aaAATTGTTCACATC--TTTTGAAACACGAG--CAAAAGTTAACGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    286280 144 +   484378 -TGTGCTCGGAAAGGCGTGAATTTCT-TTCTGCCGTGAGAGCACAGCACTCATCAGATGAGTTTAAAATGCatacattttttatattgaacATACATACACAC--------------AAAATTGTtcacatt---ttcgaaattcgag--caaaagttgaaattt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3423932 142 -  4147112 -TGTGCTCGAAAAGGCGTGAATTTCT-TTCTGCCGTGAGAGCAGAGCACTCATCAGATGAGTTTAAAATGcatacattttttatattga----acATACACAC--------------AAAATTGTTCACATC---TTTGAAACACGAGCACAAAAGTTAAAGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   559377 741 +   720316 I

a score=-11344.000000
s ce10.chrX              2737404 141 + 17718866 CAGAGTTTTCATTC-ATATTTTTTCTTTGTTACGTGGAAAA----GAAACAAAAGGTTT-------CAACTAATTCATTATGGACCACCTTTGAAACAATACAGCTTAATTTTTTTCTCTTTCTGTAAAAAGAGTTG---------------------------------------------------ACTAAAGTTCAAAAAA
s caeRem4.Crem_Contig15   261325 186 -  1794024 ------ATATATTctatattccttttttctccaaaaaaaaatgggagaacAAAGGGCTCTACGCAACGGCTAATTGGTTATGGACCAC-T-----------catctttcttcatttttttcactccaGAAACAATAATTCTTACTTTTTATTTACTCcctcttttgaaaaacatcaaaaaaccatacCACTATAGTTCAAAGAA
i caeRem4.Crem_Contig15 C 0 I 570
s caeSp111.Scaffold582    286424 102 +   484378 -----catttattc-actttctttttttccaaaaaaggaaa----agaacaaTGAAGTGAATGCAACTACTAATTGGTTATGGACCCCCT-----------Catctttctccatttttcttcc---------------------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3424074  49 -  4147112 -----ATATTATTctatattcagttttttttaaaga-----------aaca-----------------------tgaaaaagaacaaT--------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 49
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486829 408 - 21540570 I

a score=0.000000
s ce10.chrX              2737545 5 + 17718866 ATATT
e caePb3.Scfld02_0       3424123 49 -  4147112 I
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486829 408 - 21540570 I
e caeSp111.Scaffold582    286526 0 +   484378 C
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-2183.000000
s ce10.chrX              2737550 113 + 17718866 TTAGAGCAACttaaaagcgggtagcgccaaaaagggaattgtgaaaaattgtgaaaaccccacaatgatactaaaattatactaaaacgtttcaaaaaaaaatttcgaaatta
s caeSp111.Scaffold582    286526  37 +   484378 -------------------------accAAAAAACGATT-----------------ATCCTCCTCTCgtatt----ttat------------------------------tca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3424123  49 -  4147112 I
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486829 408 - 21540570 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-6939.000000
s ce10.chrX              2737663 482 + 17718866 tttatctactgtccaaaagtggcaattagagagtttt--------tgccactTTTTCAAAAAACTATAGCAAGATTGCACG-TACGAGCTCTAAGTAATATTTTAAACATAAGTAGAACACAAAAAAGAAGTAAAATCGTATTTATCCACGATTCCCA--------------GAAAACTGGC--AAAAACTGACATTTTTTTCAAGAAAAAAAAACAGTATAAAATTTAAATTTTAAGCGAGTCCCCCTACTGGCGCTACGCCACCTTTAAAAACAAATGAGGTCCGACAAGTTATACTTT---TTTTTGATTGACAACATCCAAAAAAGTGGCAAAAACTGGAGTTTTACCTCATTAAAAAATGCCCTAATTAAAAATTGTGACTTATAAATAAAATATAGTGATGTTCATTTTAGTAATTTCATTTTTTTTTCTATTATAAATTTGTTTTGAAAAACTGCCAGTCAAAATTTGAACGTTTAGTACTGGCCAATGGAGGTGAAATATAA
s caeSp111.Scaffold582    286563 272 +   484378 ---------------------------------------------tttttgtgttGCAAAAGCATCAAAAAACCAGACTCG-TAT-AGTTC---------------------------------AAAGAAGCCAACTTATACTTATAC----TTTTCA--------------ATAGGGTCTC-TAAAAACT---ATCT-------GACAAAACGACGGAA----------ACTGGAGACAAGTCCTCGAACATTTGATTGGCT-------AAAACAAA--------GACAAGT----CTCT---TTCTGCGTTGA-------------------------GAGAACTTTGCATAATCGAtgaa-----ttatagaaaaaagtggcaTTTAGGAGAAGTAAAGTGCtgtttg-------------aactttttccat-------------------------------GACAATTCGagaa-tgttctt----------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3424172 334 -  4147112 tttttcttctgtccACGAGAAACGATtatccttttcttttattcatttcagtgTTGCAAGAACAT-----------ACCCACTAC-AGTTC---------------------------------AAATGAACCAATCT-TTTTTATAC----TTTCAAAGACAACAAACAGGAGAGAGTCCCaaaaaaaCT---ATCT-------GACAAAACGACGGAA------GTGTAGAGGGGACAAGTCTCAGAACATTTGATTGGCT-------CAAACAAA--------GACAACT----TTTTGTGTTTGGGGTTGA-------------------------GGGAACTTTGCATAATCGATGAA-----TAATAG--AAACTTGGCATTTAAAACGAGTTAAGTGCGGagta-------------aatgtttttctttttgt------------------------tcaaaaactaaataattGATGTT----------------------
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold18213   559377 741 +   720316 I
e cb4.chrX              17486829 408 - 21540570 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-7685.000000
s ce10.chrX              2738145 120 + 17718866 ----CAAAGGACAGaaaaaaaaatttttttcagaaaattcattttatagtcaaatactaatattcaataattaaatataatttgaaaaaaaaCAACTTTGGTTTAAATTCAATTTCCAGATAAT
s cb4.chrX              17487237 107 - 21540570 -CGACGGAAAACaagaca---aatttttttgggatatcTAGAACTACCATTAAA----AATATTGCATagtgaa---------gaaaaaggaaaagtagTATTCTGATTCATCTTGCTCTTAGT
i cb4.chrX              I 408 C 0
s caeSp111.Scaffold582    286835  66 +   484378 tttttttcgaacaagATA--------TTTTGAGCTGGCTG---------------------ATCAGACTGCGA-----------------------------TCAGATTCATCATCCTCTTAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3424506  60 -  4147112 CAgcttgaaaatataaaa--------ttttagATTAAATG---------------------ATTG------GA-----------------------------TGAGATTTATCACCCTCTCAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   559377 741 +   720316 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=35850.000000
s ce10.chrX              2738265 130 + 17718866 TTT--TCTCAAAAAGCATC-------AGAAGCAGGGAGCAATTTAATTTTTCAAAAATACATGTTTTTCTTAAA---CAGAAAATGCGTAT------------------GT-----------TAGTAAGTGGCCGTTAGGCTTGAGGGAAAAAGAC----------AAAAACAATACAAAA-
s cb4.chrX              17487344 157 - 21540570 TTTcgtttcaaagatttttttttcgaaagggCCAGGAACAattcaattcttcaaaaatgcatGTTTTCCCGAGAAGGCAGaaaaaaaGTGTCTCCATGT-----TGTATGAGCT----GCTCCAGAAAATGG--------------AGAATAAGACggcacaaaacaaaaacaatac-ttg-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    286901 138 +   484378 TTTCGTTCCGAAGACTTTT--------GAAGCCAGGAacaattcaattcttcaaaaatgcatGTTTTTCGTGGAGTGAGGAAAATGTGTGTC-----------------TTGCA----GCTCCagaaaatag-----------gagaaaaaagggc--cacacaacaaaaacaatac-aaG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3424566 130 -  4147112 TTTCGTTTCAAAGACTTTT--------GAAGCCAGGAacaattcaattcttcaaaaatgcatGTTTTCCGTGGAGTGAAGAAAATGTGTAT------------------GTGCc----gctccagaaa------------------aaaatgggac--cACACAGCAAAAACAATAC-AAG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   560118 151 +   720316 ttttgttcCAAA-ACTTTC--------GAAGC-GGGAACAATTCAATTCTTCAAAAATGCATGTTTTCCATGAT---CAAAagatgtgtgtgtgtgtgtgtgtgtgggtgtgCtatagactcgaaaaaaaaa--------------acaaagggaC---ACACGACAAAAACAACAC-AAGA
i caeJap4.Scaffold18213 I 741 I 624
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-32228.000000
s ce10.chrX              2738395 243 + 17718866 AATCGAGAATAAAA----------AAGTTCTAAATTTATTA--TAATTTTTTG-----------AAATGTGGA-----AAAATCGCAGTTTTTGCCTTTTTTTGGAAGTAGCCGATCAAAAAAAATTT-----CTTC-----------GAGTTTA-------------------TGGTCTGCGTATGT---TTCAAATATCATTTTTAAACATTGTG-------TTGGGAGATAGAAAA--TTA-------------------TTTTTTGACTGAAAAG----------------TGCT-----------------------TAAATTAACCAAGTTTCTA-AAAATCATGATTTAGAGAAACTT---------ACAAAAAGTGTG
s cb4.chrX              17487501 208 - 21540570 aatcgaggaaaaaaaacgacttcTGAGTTctga------tgaaaaaagtttga-----------aatggaTTAAATTGTAAATGGATGCTa-------------------------------aggttttcgaatttc------------aatttc------------------------------aga---ttgt-------tttcAGGAAATGGGACA-----ATgggaaactagaaaattcg----------------gaatatttttattcggaat------------catttttt-----------------------ggaattttctgcgattttt-aagattattttttGGACAAAGGG---------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    287039 269 +   484378 AATC--------------------AAGTTTTAA------TC--AAAATGCTGgtagattttttaaaactagaa----gaaaaatgaag----------------------------------agatttgCGTTTTCT-----------GGGTATC-----------------------TTACGGAAGAGTTCTGGagcaaaatttttgaaattcacaATTTC--ACAGTATACTAACAAATTCAGCTATTCTCACataatga-------gaatgaaaataaaatcaaacctcacttttcacagaaaaacgtctcgtca----aaaattgattggaATT----ATGTTTCCAACCTGGTTAAGGTTCAAAAATGTAGGAAAGAGGTG
i caeSp111.Scaffold582  C 0 I 108
s caePb3.Scfld02_0       3424696 322 -  4147112 AATCGAGAG-------------CTGAGTTCTaa------tg--aaaagtttgg-----------aaacgatgaaaatgagaaatgaagttT---------------GATGGTCGACACTGGAAAGTTTGtgttttatttattcaacaaGGGTGTCAGATCAAAGGATCAGATATTTTTTCATGGAAGA---CTGGAAACAAATTTCTGAACTTGTAAGATTCTGACGGAACACTCACAA--TCA---ATGCGC-CGTAACAAATTTTCtggatcaaaat---ttcaaatcaccgttttttgata-----gttttataatttcaaaatttcccagAATTTCTCAAGATTAAAGTATCGCAAAAGTTCAACATCTCACAAAAACTCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   560269 624 +   720316 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-11918.000000
s ce10.chrX              2738638 149 + 17718866 CTATT-----------CAATA--TAAAATAAATCGCttaaatttataaatatt---------------------------tgaaaatatatGTGTTG-----------------------------AAAGATATGATAAGAAAGAGGAA-TATACATTTT---------CACCTTATCAAAT----TCGAA-------------------TTTCAAAATTTAGGCTTTCTGTGGAATACACTTCCTTATAC---
s cb4.chrX              17487709 119 - 21540570 ----------------CAA----TAAACAGACCcgttc----------atttt---------------------------tgaaatgcgAAT----------------------------------GAAACC----------CCAATATTCGCAGaattt---------gactttaaaaaaa-----------------gtttatatttttatcaaaa-------aaaccGCGGAATTCATTATTCCGTGTTC-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3425018 247 -  4147112 CTGTACCTTTCAAAGTCAAGAATTCAACAAAGttgctt----ctcaaaattttacttCGGTCTTTCATAAtcagaaatgatgaaatgctattttttgtgaaaaagtttTAGGTATTTAGAAATACAGAAAACAAGATTTGAACTAGTAACTACAGATTTTCTCACagtagaattgaagaaaacccCTCGAATAGGTTTtgcttcctttcttttcaaaatccaatcaaCTTTTGGAA---GATGACCCATCTAAA
i caePb3.Scfld02_0      C 0 I 35
e caeJap4.Scaffold18213   560269 624 +   720316 I
e caeSp111.Scaffold582    287308 108 +   484378 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=-10086.000000
s ce10.chrX              2738787 74 + 17718866 AGCTGAATTGAAACGATATATCGAATTTTAGGGAGAGAGAGTGAACTTCGATAATCAAAATGCAATCGCATCAC---------
s cb4.chrX              17487828 29 - 21540570 ---------AGAATAAGAGTCCta--tctatttcaaaaat-------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    287416 46 +   484378 GGCTTCATCGAGATCA---------------TACGAAAATGTGACATTTGGT------GATGCCCT----------------T
i caeSp111.Scaffold582  I 108 C 0
s caePb3.Scfld02_0       3425300 68 -  4147112 GGCttcattgaaattaaaatC---------TTAGAAAAGCGTGACATATGGC------GATGCTCCTTTGCCGCCTCCATCAT
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold18213   560269 624 +   720316 I
e caeRem4.Crem_Contig15   261511 570 -  1794024 I

a score=18305.000000
s ce10.chrX              2738861 140 + 17718866 CCACCAATGCCAAGATTTGAAAAA---GAAATGAGCTCGACAAGAAAGGAGGCAAAG-------------GTGGTGTTTTTGGCT--CCCTGCTTCTC-CCACTTA-------TTTCTTACGAG--------CTCATTTTTTCTCGACAAGAAACATT----------------CAC------AAACG--ACCAGCTC
s cb4.chrX              17487857 138 - 21540570 -------------gacttcAAAAA--------------------CATTGGAACTGGATAAACAT------------GTCCCAGACTATCATGTTTC---TTTCTCCTACGTATTTTTCTAAAAG--------CTC----ACTATTTTAATAAAACATTAGGagccaaaaaagaacaaatccaaaaaaaaaaccagaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   262081 158 -  1794024 CCACCACCTACg-tgcttcaaaaaatggaaatgagcTCAGAAAGAAATGGAACGAAATCAAAAT-ACGTCTTGGTAGTATCAGAGAATCatgtttc---tctttta-------ttttctacgAG--------CTC----TTTTTCACGAAGAAAAATT----------------CACTACCAGAGACGtcattgaaca
i caeRem4.Crem_Contig15 I 570 C 0
s caeSp111.Scaffold582    287462 168 +   484378 CTCTCACCTAcgagattgaaaaaaatggaaatgagattgaaaaggaatgaaacaaaattgaaaggAGGAGGTGGTAGTATTGGAGAATCATGTTTCCc-cttctta-------ttttctatgagccccccccccc----tttttcAAGACGAAACATT----------------CACCACCAGAAACG--ACTGcgca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3425368 156 -  4147112 CTACCACCTACgggattt---gaaatgaaaatgagattggaaagaaatgaaacaaaattgaa---aggaCGTGGTAGTATTGGAGAATCATGTTTcccttttctta-------ttttctatgAG-------CCcc----tttttcaagaagaaacaTT----------------CACTACCAGAAACG--ACCGcgca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   560269 624 +   720316 I

a score=119714.000000
s ce10.chrX              2739001 188 + 17718866 GAAAAAAAGGGAGAAAAT------------AGGA---GAAAAAAAACACTTCGTAGTCACTACACAAACCCTGGC----ATTGACAATTAGGG----C----GCACATAATTG-----GTGGTGAATGTCTCTCGAATGATTGTCAGAATGATATATCACAGCACAGATGCGGTCGGAACCCG-CCGTATGCATCGGATACGCCTCGTCAAATTTATTTAT
s cb4.chrX              17487995 194 - 21540570 aaaaaaacaattgagaaTCAGAACTTTTGAAGAGTACAAAATAAAACACTTGGAAGAAA-----------GGGGTCCTAGTCGGAATTAA-GG----CCGCGATACATAATTGCGCGAGTGG--AATGTATGTAGAATAATTGTCAGAATGATTTATCACAGAATAGATGCGGTTAACGT----CGG-----ATCGGAAACTGCTCGTCAAACTTATTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   262239 185 -  1794024 aaaaagagaagggagaACGAGG--------AGGG---AAAATGAAACACTTCGTAGACATTGC---AAGCGGGGC----ATTGACAATAA-GG----C----ACACATAATTG-----GTAGTAAATGCCTGTCGAATGATTGTCAGAATGATATATCACAAAATAAATGCGGTCAAGCT----GGGATAGAATCGGAAACGGCCCGTCAAATTTATTTAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    287630 195 +   484378 agaagagaaa--gaaaaaagaaaagaaaggagga---aaaataaaacactTCGTAGACATTGC---AAACGGGGC----ATTGACAATTA-GG----C----GCACATAATTG-----GTGGTGAATGCCTGTCGAATGATTGTCAGAATGATATATCACAGCACAGATGCGGTCGGAGTCCGAGGGTAAGGATCGGAAACGGCCCgtcaaatttatttat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3425524 195 -  4147112 aagagaaaaaaggagaaaaaagaagaaaggagga---aaaataaaacactTCGTAGACACTGC---AAACGGGGC----ATTGACAATTA-GG----C----ACACATAATTG-----GTGGTGAATGCCTGTCGAATGATTGTCAGAATGATATATCACAGCACAGATGCGGTCGGAGTCC--GGGTAAAGATCGGAAACTGCTCgtcaaatttatttat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   560893 192 +   720316 Gaaaaagcggacgaaaaaatagac------gaga---aaaataaaacacttTGTAGACACTAG---AAATGGGGT-----TTGACAATTA-AGGGCAC----GCACATAATTG-----GTGGTCAATGTCCGTCAAATGATTGTCACAATGATATATCACTGCACAGATGCGACGGTGGGCT--AGACAAGATTCGGAAACTGCTTGTCAACCTTATTTAT
i caeJap4.Scaffold18213 I 624 I 2960

a score=20028.000000
s ce10.chrX              2739189 83 + 17718866 TTTTCTTCTAC-----------CCGCCCGCCCTACTCGCAGAGCACAAGAAGT----------------AGAAA--TTGA-AAATGC-----TGCACTTATCCATTCATTCAAGTACC
s cb4.chrX              17488189 99 - 21540570 TTGCCGTTTCCCGGTCGATTCTACTTCTACTTC------------TATGTAGTAGAAAAGGGTCGCAAAAGAATTATTGAGGAATGCTCTTGTGCACTTAT-------CTCAAGTACC
i cb4.chrX              C 0 I 1684
s caeRem4.Crem_Contig15   262424 77 -  1794024 TCGTCGTTTAC-------TCTCTCGCCTACTCT------------CATGGagt----------------agaatttttga-gaatgc-----TGCACTTATCGAGCTACTCAAGTACC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    287825 73 +   484378 tcgtCTTTTAC-----------CCGCCTACTTT------------CATGGGGC--------------AAGGAAT--TTGA-GAATGC-----TGCACTTATGGAGGCATTCAAGTACC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3425719 71 -  4147112 tcgTATTTTAC-----------CCGCCTACTTC------------CATAGAG----------------AAGAAT--TTGA-GAATGC-----TGCACTTATCGAGCTATTCAAGTACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I

a score=2681.000000
s ce10.chrX              2739272 12 + 17718866 TATTTATTGAGA
s caeRem4.Crem_Contig15   262501 12 -  1794024 TCATTCTTCAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    287898 12 +   484378 GCATTCTTCACA
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3425790 12 -  4147112 GCATTCTTCAGA
i caePb3.Scfld02_0      C 0 I 474
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17488288 1684 - 21540570 I

a score=1757.000000
s ce10.chrX              2739284 7 + 17718866 AGAACCT
s caeRem4.Crem_Contig15   262513 7 -  1794024 AGGACCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    287912 7 +   484378 AGGACCT
i caeSp111.Scaffold582  I 2 I 470
e caePb3.Scfld02_0       3425802 474 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17488288 1684 - 21540570 I

a score=-7542.000000
s ce10.chrX              2739291 867 + 17718866  
s caeRem4.Crem_Contig15   262520 550 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3425802 474 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17488288 1684 - 21540570 I
e caeSp111.Scaffold582    287919 470 +   484378 I

a score=-2584.000000
s ce10.chrX              2740158 59 + 17718866 AAAAGTGTGAAATTTTTCCAAAAAAAAT-----CTGCACCCGGATACGTTAGAACGAACCAGGG
s caeRem4.Crem_Contig15   263070 21 -  1794024 --aaatttcaa---------aaaacaac---------------------------aaac-----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3426276 53 -  4147112 aaaaattccaaatt----cgaaaaaaacgttGTCTGAACTCGATTCc-------taaacagaag
i caePb3.Scfld02_0      I 474 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17488288 1684 - 21540570 I
e caeSp111.Scaffold582    287919 470 +   484378 I

a score=-665.000000
s ce10.chrX              2740217 19 + 17718866 AAGAAAATATAGCAGACAA-
s caeRem4.Crem_Contig15   263091  3 -  1794024 -----------------cga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    288389 20 +   484378 aaaaaaaaacaacaaaccGA
i caeSp111.Scaffold582  I 470 C 0
s caePb3.Scfld02_0       3426329 18 -  4147112 --aagaaaacaacaaactgG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17488288 1684 - 21540570 I

a score=110736.000000
s ce10.chrX              2740236 283 + 17718866 ATCAGTTTAAATGTTTGATGCCGGAAACAAAAACGTAAAAACAAAAAAAAATGCGAAAAGAAAACTGCTCATCGTAAGATTAAAAAAAAAGGAAAGCAAGAACTAATTTCGTTTGGAAGAGCAGAACAGAGAGACAACCATAAGAGAAAAAAAGAAAGAAGTTTCGGAGAATAATTCT-AAAATGCGTAGTATCTCGTTTCGGC----AAAACGTGCCTAGAAATGGTGGC-TGATGTTTTAGTTGATAC------ATATC---------CGCACGCTATTCACTAATTTAGTCCAATACTAAT----------------
s cb4.chrX              17489972 257 - 21540570 ATCAATT---GTGCTTGATTTGAGAAATGAAAAcactagaaac------------ccaaaatctTCATCCAGCGTAAGATTAAAAA---CGAGAACCAAGAACTAAT----TTTGGAAGAAAGAGACAGAGAAAAAGACATAAAAGA-----------GAGTTTCGGagcaaaattcc-aaaatgcgTAGTATCTTGTTTCGGC----GAGTGGCA------A------GC-TGAAGTCCTAGATGAtactttttcctttcttccACAACCACACGCTATGCACTA------------ACTAATTGAGACCAAAAATGAT
i cb4.chrX              I 1684 I 174
s caeRem4.Crem_Contig15   263094 247 -  1794024 atcagtgcaaatgtttgatgccaaaaacgaaaaacataaaaaa------------ggaaggaaactgctcatcgtaagattaaaaa---aggaaagCAAGAACTAATTTCGTTTGGTAGAGTAGAGCAGAGAAACAGACATAAGAGA------------AGTTTCggaagaaaattcc-aaaatgcgTAGTATCTTGTTTCGGG----AAAGCTCA------AGAAGTGGC-AGAAGACCTAGATgatacttcttcttttc--cca----cACACGCTATGAACTA------------ACTAAT----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    288409 246 +   484378 ATCAGTGCAAATGTTTGATGCCGgaaacgaaaacataaaaa--------------agaaagaaactgctcatcgtaagattaaaaa----ggaaagcaagaacTAATTTCGTTTGGAAGAGGAGAGCAGAGAAACAGACATAAGAAA------------AGTTTCGgag-aaaattcc-aaaatgcGTAGTATCTTGTTTCGGGTGGCAGGGCCCACC----AGAAGTGGC-GGAAGTCCTAGAtgatactttttttttct---------cacacgCTATGCACTA------------ACTAAT----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3426347 242 -  4147112 ATCAGTGCAAATGTTTGATGCCGGAaacgaaaacataaaaaaa-----------gagaacgaaacTGCTTATCGTAAGattaaaaa----gaaaagcaagaaCTAATTTGGTTTGGAAGAGGAGGACAGAGAAACAGACATAGCAAA------------AGTTTCGgag-agaattccaaaaatgcgTAGTATCTTGTTTCGGG----AGGGCTCA------AAAAGTGGCAGGAAGTCCTAGATGATAC---TTCTTTCC---------CACACGCTATGCACTA------------ACTAAT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I

a score=-41828.000000
s ce10.chrX              2740519 521 + 17718866  
s caeRem4.Crem_Contig15   263341 239 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    288655 215 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3426589 229 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17490229 174 - 21540570 I

a score=61214.000000
s ce10.chrX              2741040 192 + 17718866 TTGATTGGTTT-------ACGTC---AGTG----AGCACGAAACAAAAAAGTAATTGCCTTCATTTTCCCGTGATTT-TTTTCATCAA--TTTTGGCCGGAATAGTTAACAGGAAAGGAGCGA--ACACAATAGGATGTTTTGAAAAAATCGC--CTTCCCTAAGGGTTTACCTATCAGGGCACTCTCATCTTATTTC---TCCTTTATTTATCCT
s cb4.chrX              17490403 184 - 21540570 TTGATTGGTTTCTTATTCGCGTCGAAAgcgaataaaaatg---aaaaaaagtaattgaCTTTA---------GAATT-GTTCAGG-------------AGCTTAGTTTACAAACAAATG--GA--ACACAATA-GCCGTTTTGAAAAGAGATCC-CTCCCCTTGGGGGTTACCTATCAGGGCACTCTCATCTTATTTTGTCCACGACGTTTATTCT
i cb4.chrX              I 174 C 0
s caeRem4.Crem_Contig15   263580 164 -  1794024 ------------------ACGTC---AGCG-----GAACA---TAAAAAAGTAATTGCCTTCATTCT--CCtgattt-gttcagtttt--ttct---cagaCCAGTTTACAAACAAAC---GA--ACACAATc-gacgttttgaaaaaga-----ccTCCCTAAGGGTTTACCTATCAGGGCACTCTCAtcttatttt----cctagatttatcct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    288870 190 +   484378 TTGATTGGTTTCTTCA--ACGTC---Acca----aaagcg---aaaaaaagtaattgccttcattttcaactgattt-GGTCAGTTTA--TTCT----CGTTTAGTTTACAAACAAATG--GAACACACAATC-gacgttttgaaaaaaagacctCCGCCCCAAGGGGTTACCTATCAGGGCACTCTCATCTTATTCC----CTTtcatttctcct
i caeSp111.Scaffold582  C 0 I 46
s caePb3.Scfld02_0       3426818 179 -  4147112 TTGATTGGTTTCTTTA--ACATc---agtg----aa-------caaaaaagtaattgcTTTCATTTC--ACTGATTTCGttcagttcattttct----tttttagttcaCAAAGAAATG--GA--ACACAAtc-gatgttttgaaaaag------cctCCCCAAGGGTTTACCTATCAGGGCACTCTCatcttatttt----cttttatttatcTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I

a score=-10753.000000
s ce10.chrX              2741232 45 + 17718866 TGGCGCTTTCCCCCTTCGCCTAGTCAAGATTTGCGGTTTTTGGCG------------------------------
s cb4.chrX              17490587 35 - 21540570 ----AGTCCATCTCTTCCATGTAACT---------------------AATT--------------aaagtgaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   263744 62 -  1794024 ----ggtttatttcttctatttttctttcctt-------ttcacGCATATTGCACAGA-GAACGGaatgtaaaa-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3426997 57 -  4147112 -------------CTTGGATTTCCTTTTATTT-----CGTTCACGCATTTTGCACAAACCAAGGAAATGTGAGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289060 46 +   484378 I

a score=76323.000000
s ce10.chrX              2741277 237 + 17718866 --AAGGGCGAATAATCGGGATACTAGTCACAAAATGTAACAAAATTAGTTGAAATAAGTGAAGGAGAGAGGAGAAAAAAAATGGAAGGAAAAGATGCCGCTGACTAACTCGGTTATGAACTAGCACGCAGATGAAAAG--------AGAAATG-------------GAGACCCCG-----AAGCGG-----------------------GGCAAAACGAAGAGTCAAAAATGGACGGAT-GAAAAAAGGTCTGGGAAAAAA------AGATCGTTGAATTT-------------AAGAAAGTGAATAC
s cb4.chrX              17490622 265 - 21540570 aatgacaaaaataatCTGAATTCAAGTA--AAAACCCAACAAAATTAGTCAAGACGAatga---------gagcaaaaaaa--aacgaaagcgA----CCCTACTAACTTGGTTATGAACTGGCACacagatgagaag--------aagaagaaaacggagCAGAGGACCCCCTATCCCGAAGTGGGGgagaaga--------------gatgaaacgaagagtcaaaaacggaag----aagaaaaggtctgagaaaaaaaaactggagcagatgaatttttttggaaaaaaaaaagaaatgaagac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   263806 215 -  1794024 aataatgaaaataatctGAATTCTAGTGACAAAATGCAACAAAATTAGTAAAGACGAGTGA--------------------------AAAAAGA----GCCGACTAACTCGGTTATGAACCGGCACgcagatgaaaaa--------aaagaaa---------agagggtCCCTGA-----AAGTGGGTG-GAAAC--------------GATGAAACGAAGagtcaaaaacg---g----aaaaaaacgtCTGAGAAAAGA-----TGGGTCTatgaattt--------------agaaaatgaataC
i caeRem4.Crem_Contig15 C 0 I 259
s caeSp111.Scaffold582    289106 241 +   484378 --aagaagaaataatCTGAATTCTAGTCACGAAATGTAACGAAATTAGTTAAGACGAGTGA--------------------------AAGAAGA----GCCCACTAACTCGGTTATGAACTGGCACgcagatgaaaaagagaaagaaaaaatg---------agaggagACCCCA--CCGAAGTgtaggaggagaaggagaaggatgatgatgaaacgAAGAGTCAAAAACGGA------ATGAAAAGgtctgagaaaaat-------gatcacTGAACTG-----------CCATGGAAgaaaatac
i caeSp111.Scaffold582  I 46 I 278
s caePb3.Scfld02_0       3427054 213 -  4147112 -----AAGAAATAATCTGAATTCTAGCTACGAAATGTAACGAAATTAGTTAAgacaagtga--------------------------aaaaaga----gaccaCTAACTCGGTTATGAACTGGTGCgcagatgaaaaag-------aaagatg---------------gcCCCCA--CGGAAGTGTAGGAGGA----------------GATGAAACGAAGAGTCAGAAACGGGGGAGCTATGAAAAGGTCTGAGAAAAAG-------GGTCCCTGAACTG-------------AAGGAAATGAAGAC
i caePb3.Scfld02_0      C 0 I 341
e caeJap4.Scaffold18213   561085 2960 +   720316 I

a score=250.000000
s ce10.chrX              2741514 5 + 17718866 TTACT
s cb4.chrX              17490887 5 - 21540570 ATACT
i cb4.chrX              C 0 I 108
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=0.000000
s ce10.chrX              2741519 101 + 17718866 AAAATATACATttaaagggtcgagtagtgtcagtacggaagttgctttaaatGTCTGATATTTCTGATATTTCTTATTTATGAATTAAAGAAGATTTCGAA
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17490892 108 - 21540570 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=-1318.000000
s ce10.chrX              2741620 167 + 17718866 TTCTGAGTTTT------TAGAAAAATTTTACAAGTTGATTTTTTCAGTTTTAT---------------------TTTTGCAGGTTTTCGCAGGT-TTGCAGGG-------AACAC-----GAAAAATAAA--------------------AAAATTTCGATTTCTATTTTTGTTCCGGTTGTTAATAAGGCCTG--------------------------CTTTAGAACTTTCCGG------CTTTCCGGCttcaaggt
s cb4.chrX              17491000 256 - 21540570 TCATGAGTTTTATATATTGAAAAAAGCTAATAAG---ATCCACTCTGACTAATATTagagtcgaaaaaaaacaattttcaaagtattcGAAAGTGTTGAAAAGCTAgaagatcattttttgaaaaaaaaaccacttattgtaaattcttgaaaatttggctctaTTTGGttattttcaactttaaagaATCTTGGATAAATCAgagatgttcggaacggaattcggaattttttgaaatattttttctggaatcaaatt
i cb4.chrX              I 108 I 91
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=0.000000
s ce10.chrX              2741787 58 + 17718866 ggagtagagtcagtgcagaaattccattaaaacacgccaatggtatagcaatgacccc
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17491256 91 - 21540570 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=155.000000
s ce10.chrX              2741845 272 + 17718866 aacatagttaaaacattcgaaaacattttctaaaatttataaaaat----------------------tttcgaaaatttgaaaaatctcagtttttatctaattaaatttgaaAACGATTCGCTCGATA----------------AAATGCTATTTC-------------------TGCAAACT--------TTCAGTGTTTTCCG----------AATGTTTAAAG-----TTGCGTTC----TTTTTGGAA---CAAA-------TCGGAAACATTTTCGACCGAAGCCAAGTTAAGAAATTTTCAGATTTTTTCAAAAAAAAAAAAAAACAA--------------TAATTTT---CCAAAAATCTCCCGAGAATTTTC
s cb4.chrX              17491347 363 - 21540570 aaaatcgccgaaactttcgaaa-----ttttaaaaattttaaaatcggaatattccgaaattccgagattttgaaaattggaaaattccgaatttccga------aattttgaacaaggAATTTTCGTTATTCCGAAAAACTCCGGAAAGGCCATTCCGAATATCCCTAGTTTTAAATGAGAATTGTCTGGATTTTAGTGTTTTTCATGTTCTGCAAAATGtccagaaaaattttacaatCCAACTTTTTGGTAATCCAAACGTTGCTTCAAAATCCTATATAACCGAC-tagagccaaaaattcataagat--------aaaaattgaaagtcaACAGAATCTAGTTGGTAATTTTGGATTACAATTTTctagataattttt
i cb4.chrX              I 91 I 11
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=0.000000
s ce10.chrX              2742117 23 + 17718866 ACCTAACTTTAAACGTCATAACG
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e cb4.chrX              17491710 11 - 21540570 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=-1303.000000
s ce10.chrX              2742140 449 + 17718866  
s cb4.chrX              17491721 464 - 21540570  
i cb4.chrX              I 11 C 0
e caePb3.Scfld02_0       3427267 341 -  4147112 I
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=-1579.000000
s ce10.chrX              2742589 30 + 17718866 TTCTGGTTGTCAGTTTCAAAAC----AACATTCT------
s cb4.chrX              17492185 17 - 21540570 -------------tttcaaatc----aatatgat------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3427608 26 -  4147112 --------------TTCAAGTTgtaaaacacgaaaaaaaa
i caePb3.Scfld02_0      I 341 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I
e caeRem4.Crem_Contig15   264021 259 -  1794024 I

a score=288.000000
s ce10.chrX              2742619 6 + 17718866 AATGTC
s cb4.chrX              17492202 3 - 21540570 ---tac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   264280 6 -  1794024 agttcc
i caeRem4.Crem_Contig15 I 259 C 0
s caePb3.Scfld02_0       3427634 6 -  4147112 ggttcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I
e caeSp111.Scaffold582    289347 278 +   484378 I

a score=7525.000000
s ce10.chrX              2742625 29 + 17718866 ACTAATTGT-TTTTG---AGATATTG---AATAA-----AT
s cb4.chrX              17492205 31 - 21540570 gc------t-ttttgcaaaaatatta---gatgagaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   264286 30 -  1794024 actaattgt-ttttg---agatattg---gatgag----aa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    289625 34 +   484378 ACAAACTGTATTCTG---CGGTATTAtttgatgag----aa
i caeSp111.Scaffold582  I 278 C 0
s caePb3.Scfld02_0       3427640 30 -  4147112 actaattgt-ttttg---agatattg---gATGAG----AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   561085 2960 +   720316 I

a score=95728.000000
s ce10.chrX              2742654 93 + 17718866 ATATGAGTATTGCGT-GAAAAAGAGGAGGCAAGGATAAGTGGTTCG--CATGAAGATTGCCGGAAAAAGAAACGGAAGAAAACGTATTAATCGTCG
s cb4.chrX              17492236 94 - 21540570 aaatgaatattgcGTCGACATGAAGAGGCAAGGGATAAGTGGTTCG--TATGAAGATTGCCGGAAAAAGAAACGGAAGAAAACGTATTCGTCGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   264316 94 -  1794024 atatgaatattgcgtgaaaaaagaggaggcaAGGATAAGTGGTTCG--TATGAAGATTGCcggaaaaagaaacggaagaaaacgtattcgtcgtcg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    289659 91 +   484378 atgaaaatattgcgt-gaaaaagaggaggcaAGGATAAGTGGTTCG--TATGAAGATTGCCGGAAAAAGAAGCGGAAGAAAACGTATTCGTCGT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3427670 93 -  4147112 ATATGAATATTGCGT-GAAAAAGAGGAGGCAAGGATAAGTGGTTCG--TATGAAGATTGCcggaaaaagaaacggaagaaaacgtattcgtcgtcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   564045 89 +   720316 ATATGAAGATTGCAC------AACGGAGGCAAGGATAAGTGGTTCGTTTTTGAAGATTGCCGG-AAAAGAAACGGAAGAAAACGTATGCGTCGTCG
i caeJap4.Scaffold18213 I 2960 I 622

a score=-34067.000000
s ce10.chrX              2742747 137 + 17718866 TCTTCGTAGTTGTGCAATGGGCGCACTGCTACTGCTCAT----GCTGACGA------------CAAAAAAGAACTATT----------TTAAAAC-ACACATTTTGAGACATTATTATTTTTTTGAA--------------GCACACAGTTTTTA----------AAACTATAAATTGTGGGA-TAACA------------------------------------------------
s cb4.chrX              17492330 186 - 21540570 TT------GTGCTCCAAGGCTCCGTCTTCTTTTCATCTTCTAGTAGGACAACGGAC-------AAAATGCGGACCATTcccc-----cccAAGACAATCTGG------ACACTACTCTATTGTTGCAAACATATTCCACATGGGACCCATTtggagaaaatatgaaaataataattttcggatttttcag---------------------------agatAATCAAAAACAAGATG
i cb4.chrX              C 0 I 347
s caeRem4.Crem_Contig15   264410 185 -  1794024 tc------gttgtGCAATGGGAGCTCTGCTTCTGCTCTT----GCTCACAACGGCGATGGACGATGAAACGAACTATT----------CCAAAAC-ACCGAT------AAGTAACACAATTCTT---------------------CTAATTTATCAGAAAT----AAATCCGTATTTCCGGATGTCTcaacttctattttttgatttctgactttatatatatatagcaagaaaacg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    289750 154 +   484378 --------GCTGTG-----GGTGCTCTGCCCCTGCTCCT----GCTGACGACAACG-------ACAAAAAGAACcatattttaaaaacactATGA-ATAGAC--------ATTACATTGTTCTGAAGTGTAACAGCAATTCGCACTAAGTT------AAGG----CCACAAGAAATTTGA----CTTCAGACT------------------------ATTTAGGt------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3427763 151 -  4147112 tc------gttgtGC----TGTGCTCTGCAGCAGCTTCT----GCTG------ACG-------ATGAAAAAGACCATATCTT------TCAACAA-ATAGAT---GCAAAATTATTATCTTCTGATTAAAAACCG-AATTCGAGCCAAGTTTTGcaaaaga----aaacttgaaattt------tttcagct--------------------------tctagtt------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   564134 622 +   720316 I

a score=22708.000000
s ce10.chrX              2742884 115 + 17718866 TTCT--------GAGCAAATCGATATAATTATTTGAACTATTTTAT---GAGCTTATT--TCAGC---AAAATATG----TCATTTGCAGGTG---------CTTTCAAGAGTTTGAAAGTC---------AGATTTAATTAACCAAATTCAG
s caeRem4.Crem_Contig15   264595 140 -  1794024 ------------aaagaaattctAACATATATTTAAACGTATTTGTGTGGAAGTTATTTGTTGACAGTAGAGTctgcttttcaatttttgatgaatactGGATATTCAGAAGCTGACAAAACAACTTCTT-AAAATGAGGAAACAAAATTCAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    289904 148 +   484378 ttttttGCaagaaaacactttttgaaaaata-ttgaacgTATTTGTGTGGAAGTTATTTGTTGAC---TGGGACtgcttttcagtttttgatgaatacTGGATATTCAAAAGCAAAGAAAACAACTTCTT-AAAATAAGCACACCAAATTCAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3427914 149 -  4147112 ctcttcaaaaaaaataaaatctaaaGAGATA-TTGAACGTATTTGTGTGGAAGTTATTTGTTGAC---TGAGActgcttttcaatttttgatgaatactGGATATTCAGAAGCTGGAAAAACAACTTCTTGAAAATGGGCACACAAAATTCAG
i caePb3.Scfld02_0      C 0 I 105
e caeJap4.Scaffold18213   564134 622 +   720316 I
e cb4.chrX              17492516 347 - 21540570 I

a score=-9549.000000
s ce10.chrX              2742999 112 + 17718866 ---------------------------------------------------------------------------------------------ACGTT----------------------AAAATCGCTCAGA-------CTTAGATTTTTTCTTCTTAACGTTACTGAAAGTTAGAAAAGC-ACCGGAAGCCAGCTATGGTAG-TTAAATAA-----TGATGTGACTTCACAATGCTTTG
s caeRem4.Crem_Contig15   264735 211 -  1794024 GTCGTAGAGC--GAAGAGAAGCATATTttgtcaaaagaaaaaaagaaagcttGAGACTAGTCGGTAAATGGCCAGGAATGAGGAATGACCAATGGGTCGCGTATTTCGGTTTTTGAGAGGAAAATATTGAAGG-----GTCTtgatttttcctatttcaaa-------------aGATTTGCAAACGGAAACTC---ATAACAC-TCAAGTAC--AATGGgtgt----ccaaaaattttga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    290052 177 +   484378 GTCGgaaagaaggggaagaaacttgttttgttgaaaaaaagcaa---------aaccCAATTGGTC--------------ATGAATGGCCAATGggtt--------------------gaaaaatagttgagGACGGAGTCcttatttctttatttttgaa-------------atacgaGC-ATCGGAAACTA---TAAGGACTTTAAGTACCTATTTGGGGTGGTACCATAgctc----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3428063 105 -  4147112 I
e caeJap4.Scaffold18213   564134 622 +   720316 I
e cb4.chrX              17492516 347 - 21540570 I

a score=-6399.000000
s ce10.chrX              2743111 49 + 17718866 A-----GAAAAAAGTTATTGAC---------------AGAATTTATGAGCAAACGAATGCTCACTGATT-----------
s caeRem4.Crem_Contig15   264946 57 -  1794024 agagcTATAAGAAGTTATTGACATATAT-CCCACGATGAGAATCTTGAAAA---------------GTATTTT-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    290229 61 +   484378 ------agaaaaagttttcggtGTATAT-CTTgg---gaaaattttcagaagaaaaa---------gttgttttgtgaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3428168 69 -  4147112 ------GGAAGGAAGTCCtgatttctctattttc---aaaaattatgaggAACGGAA--ACTAGTGGTTGTTGCCCAAAA
i caePb3.Scfld02_0      I 105 C 0
e caeJap4.Scaffold18213   564134 622 +   720316 I
e cb4.chrX              17492516 347 - 21540570 I

a score=-18334.000000
s ce10.chrX              2743160 190 + 17718866 -------------------------------------------------------------------------AGAGTGTCTAGGTGGAATCTATACTTCCGTTGATATGATTAGGTTTTATGTGAGAAGTGG-----------------GTAGAAAAA-----------C---------------ATTCTTATTCCAACAC----------TTGTTAGAAACTTTGA-----CTCGAGTAA--------AGCCAAAAAAAAACTTGCT--------TCTGAAA--TGTAGAATCTAC-G--AAGAGATAGAACAGAAATATATACACACACATACCAAATC
s cb4.chrX              17492863 218 - 21540570 -------------------------------------------------------------------------agagagaaaaaaaggaaattatatttctatTGATA-------------AGAGAAAA--------ACACTGAGGATGGATGAAATGG-----------ATTTGAAGACCT---GATTTTAAGACAAAACTCACcacttcttttctgaaaaatctggatgT-CTTGACTAAAACGTGGTGACAT--CTGAAACTTGCTTTTCtgagtctgaaatttttaggatcTCTCAACAAGAGACTAAA-------------ACGAAAACACCAAATC
i cb4.chrX              I 347 C 0
s caeRem4.Crem_Contig15   265003 206 -  1794024 -------------------------------------------------------------------------GGAACCAATAGTGGGCGTCTATACTTCCGGTGTTAT-----GGTCTTGAAAGGAAATTGGTATCGTATTGATGATGCTacaaatggaaaaatacaTAACTAGGAGATGT----ATTTTGAGAACCAACT--------------TGTAAAATATG------CTAGACTCA------GTGACTTGAAAGAAACTtgct--------tctgaaa--ttcaaaatctcttg--aagagatggaa----------------aaaacaccaaatc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    290290 181 +   484378 atat------------------------------------------------------------------tttccaacCCGTAT----CATCTATACTTCCGTTATAAT-----AGTAT-GGAAGGAAATT-----AATATTG-------TTCCAAtaa-----------c-------------aaatttttctaacACGAT----------TCGTGAAAAAACGTCac----gtcgaaaaa---------------aaacaacttgtA--------TCTGAAA--CTCAGAATCCCTAG--AAAAGATAGAATAA--------GCATGCACACACCAAATC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3428237 273 -  4147112 ATGTAATAGGGGTGTTCAACTTAGAAATGAGACATACTACAGATCGTTTTCAATTGCTTCTAAAAATAAGTTTCTAACCAATTC----CTTCTATACTTCCGTTGTTAT-----GGTCTAGAAAGGAAATTAGTGGAATAGTA-------TCAAAACAA-----------CCCAGACAAAATCAAGATTTATGTCACATACT---------CTcacagaaaaaactcactgctgttgagaaa---------------aa--aagttgtt--------tctgaaa--ttcagaatctctAA--AAGAGATAGAacac----acatacatacacacacCAAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   564134 622 +   720316 I

a score=180118.000000
s ce10.chrX              2743350 391 + 17718866 ---AGATATTGAAAAAGCACA---------------GCAGACACAACAAAACATCA-TTCAACAATGGTTAGCGTTTC---ACAACGCTAGACAACAAATATAGCTCATGAGAG-CAAAACGAGACTATGATATGCTG-----------------CCCTCAATCTTAAGGGTCTCTTTTTTTGCTGCTGCTGCTGCTGCAGCAGA-------TACGGAAAAAAAGAAC---GCTCTGGTCCCACAGCATATTTTTCATAATCCCAGAGTGTCGT---T--GTTGTGTCGTGAA---CGTTTCAAA--TTTTGATCTTTCTCGGATCTCGAAGACAACTTAAGAAAAG----------AATAACTCACTGGCTCGGCGATGGCAGCTGTCTACTTGCCTCTTTCATCCTCGTCATCAACAGTGCACATGTCTTATGATCGCTGACATCGACTACTCTGAAAT
s cb4.chrX              17493081 365 - 21540570 ---AGA----CTAACAAGACATGCAT----------ACAGACAAGAAAAGGCAGACGTTCAACAATAGTTAGCGTTTTTTGACAACGCCAGTCAACAAATATTGCTCGTAATAG-CTG---GGGACTATGATATGCTGCCCAGCATCTTATgctcctttttttgtttcgtacATTTTCTCCTG-------------------AAA-------AAGAAGACCAGAACACTTTGCTTTGGTCCCA---------------ATTCCCTGGGTGTCGTttgt--aacattttttgaa---c-tttcatt--taccacacttttg--------------acctttttttc------------gaGGACTTACTGGTTCGGCGACGGCAGCTGTCTACTTGCCTCTTTCATCCTCGTCATCAACAGTGCACATGTCTTATGATCGCTGACATCGACTACTCTGAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   265209 355 -  1794024 ---aga---tctaaagaaacaaacacgtacacaccgacagacacaaaaaaGCA----TTCAACAATAGTTAGCGTTTC---ACAAAGCGAGACAACAAATATAGCTGATGAGAG-CAAAGCGAGACTATGATATGCTGC-------------CGCCTCTCCATCTTTCGGCTGCTCCCTTTtt-------------------aag-------aaaaggaaaaaagaac---actATGGTCCCAAAGC---------ATATTCCCTGAGTGTCAT---C--ATTGTGTCTTGAA---C-TTTTAAA--TAccgt-tttttg-----------------tttaaaaa------------aaagacttacTGGCTAGGCGATGGCAGCTGTCTACTTGCCTCCTTCATCCTCGTCATTAACAGTGCACATGTCTTATGATCGCTGACATCGACTACTCTGAAAT
i caeRem4.Crem_Contig15 C 0 I 230
s caeSp111.Scaffold582    290471 356 +   484378 ---AGA---TGGAGAAGCACC----A----------ACAGATACAACACAACAGAA-TTCAACAATGGTTAGCATTTC---ACAAGGCCAGACAACAAATATAGCTCATGAGAGTCAAAACGAGACTATGATATGCTG-----------------CCATACATCTTtagttcgttttttttct-------------------gggagaagaagataagaaaaaagaac---actcGTGTCCCAGAGC---------CTATTCCCTGAGTGTCGT---C--AATGTGTcgtgaaactt-ttttgaa--tactg-------------------------tttgaaaaagtgaccGATGAAAAGACTTACTGGCTCGGCGACGGCAGCTGTCTACTTGCCTCCTTCATCCTCGTCATCAACAGTGCACATGTCTTATGATCGCTGACATCGACTACTCTGAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3428510 349 -  4147112 ---AGA---TGTAGAAGCACCCATAC----------ACAGACACAACAAAACCGCA-TTCAACAATGGTTAGCGTTTC---ACAAGGCCAGACAACAAATATAGCTCATGAGAG-CAAAACGAGACTATGATATGCTGA-------------CTCCTATACATCTctagttctttttt----------------------------------gaaaagaagaaagaac---acTATGGTCCCAAGACAAAATAT--ATATTCCCTGAGTGTCCT---CTGAGTGTGTCGTGAA---C-TTTTgaa--tactgt------------------------tttgaaaaagtgtc------aaagacttacTGGCTAGGCGACGGCAGCTGTCTACTTGCCTCCTTCATCCTCGTCATCAATAGTGCACATGTCTTGTGATCGCTGACATCGACtactctgaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   564756 273 +   720316 agaaaa---cgaagaagcaca-------------------acaaaaaaaaacaaca---cgaC--TAGTTAGCGTTTC---AC-ATgccaaacaacaaaaatagctCATGAGAG-CAAGACGAGACCATGATATGCAG-----------------TCATACGTCTC-------------------------------------------------------------C---Actttcgtt-------------------ttccct---ttttct---t--ttttcgttttg-----c-tttcAAAATGACTG-------------------------TTA-----------------AAAGACTTACTGGCTAGGCGATGGCAGCTGTCTACTTGCCTCCTTCATCCTCGTCATCAACAGTGCACATGTCTTATGGTCAGACACATCGACGACTCTGAAAC
i caeJap4.Scaffold18213 I 622 C 0

a score=-950.000000
s ce10.chrX              2743741 2 + 17718866 CA
s caeSp111.Scaffold582    290827 2 +   484378 CA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3428859 1 -  4147112 t-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   565029 2 +   720316 TA
i caeJap4.Scaffold18213 C 0 I 226
e cb4.chrX              17493446 0 - 21540570 C
e caeRem4.Crem_Contig15   265564 230 -  1794024 I

a score=-257.000000
s ce10.chrX              2743743 14 + 17718866 AAAAAAGAAGTCTT
s cb4.chrX              17493446 12 - 21540570 -AGGGAATAGTTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    290829 14 +   484378 CAATATATAGCTTT
i caeSp111.Scaffold582  C 0 I 434
e caePb3.Scfld02_0       3428860  0 -  4147112 C
e caeJap4.Scaffold18213   565031 226 +   720316 I
e caeRem4.Crem_Contig15   265564 230 -  1794024 I

a score=-39120.000000
s ce10.chrX              2743757 922 + 17718866  
s cb4.chrX              17493458 574 - 21540570  
i cb4.chrX              C 0 I 35
s caePb3.Scfld02_0       3428860 653 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565031 226 +   720316 I
e caeSp111.Scaffold582    290843 434 +   484378 I
e caeRem4.Crem_Contig15   265564 230 -  1794024 I

a score=216.000000
s ce10.chrX              2744679 44 + 17718866 TGACAAAAAGCACCCTTTATAAACGTATCGATGTGCAAAACTAC
s caePb3.Scfld02_0       3429513 32 -  4147112 TGATAGGG--------TTACGAA---ATCGATAT-CAAGAATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565031 226 +   720316 I
e cb4.chrX              17494032 35 - 21540570 I
e caeSp111.Scaffold582    290843 434 +   484378 I
e caeRem4.Crem_Contig15   265564 230 -  1794024 I

a score=-4972.000000
s ce10.chrX              2744723 65 + 17718866 AGATGAATTGAAGAATGAAAAGTTTCATTGAAAGTTTTTTTTTTGCTCAAAGTT---TTAGTTAGTAG
s cb4.chrX              17494067 61 - 21540570 agaaaatttga--gaggAAAA---TCACTGAGA-TAGATTCTGAATTCGTATATTCGCTgttctcaa-
i cb4.chrX              I 35 C 0
s caePb3.Scfld02_0       3429545 22 -  4147112 -------------------------------------------AACTCAAATGT---CTTGTTTCGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565031 226 +   720316 I
e caeSp111.Scaffold582    290843 434 +   484378 I
e caeRem4.Crem_Contig15   265564 230 -  1794024 I

a score=517.000000
s ce10.chrX              2744788 2 + 17718866 AA
s cb4.chrX              17494128 1 - 21540570 -a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   265794 2 -  1794024 aa
i caeRem4.Crem_Contig15 I 230 C 0
s caePb3.Scfld02_0       3429567 1 -  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565031 226 +   720316 I
e caeSp111.Scaffold582    290843 434 +   484378 I

a score=36766.000000
s ce10.chrX              2744790 168 + 17718866 AATTAG------TATTATCTAC------ATGTATCCATTCTT-TCAGACTCATAATCTATGAAATTCTAGCC--GCCTCAACAGAATAGCAAATCAGATGAATTCTTAATTTTTTTTTCGTC-----GAATCTATTTCCATCATTCGCACTCTCTCCCCGTTCCC--------TCCACCCACTAATA-------------AATGAACTA-
s cb4.chrX              17494129 194 - 21540570 aattggt-----tgTCATCTATTACATTATTAATGCATTCTC-CAAGACTCATAATCTATGAAATGCTAGACGTGTGTGAACAGAATAGAGAATCAGAATTATTCA---TCGTGTCCCTCCTCCTCGGAATCTATTTTTACGATTC-------TGTTACGTTCCAGCTCAACTTCTCTCTATAGATCCCTTCAAGCCCTTCataaatcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   265796 175 -  1794024 aattaatgTTAATGAAATCTGCTA------------ATTCTC-TAAGACTCATAATCTATGACATCCCAGTC--GTGTGAACAGAA-AGAATATAAGAATAATtcat--ttgaattcccgct-----gaatctATTTTCATCATTA----GTGTCCTCCATTCCA--------TCCACCCAGAAAtgtttgaagatttgaaattattctA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    291277 183 +   484378 AATTCG------TGTTatcttctttcttattcACTCATTCTTCCAAGACTCATAATCTATGACATCCTAGAC--GTGTGAACAGAATAGAATCCCAGAATAATTCAT--TGGAATTCCCGGc----gaattctattttcatacGTC----TTTCACTCCGTTCCA--------TCCACCCACTAATGTCTAcggaaattgatttgaatc-
i caeSp111.Scaffold582  I 434 C 0
s caePb3.Scfld02_0       3429568 174 -  4147112 AATTAG------TGTTATC------CGTATTCACTTATTCTT-TAAGACTCATAATCTATGACATCCTACTC--GTGCGAACAGAATAGAAACGTTGaataattcat--tcaaattcccgTC----CGAATCTATTTCCATCCGTC----TAT--CCCCGTTCCA--------TCCACCCACAAATaccaaaataaattgaatcaTTTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565031 226 +   720316 I

a score=233330.000000
s ce10.chrX              2744958 408 + 17718866 TTA------ACCTTCTGGGTGTTTCAAAGAATAGTGCGGGCCCGATTAATCCGAGAAGTGGTGCTGTCGGAAGACGAGCATCT------TCTTTTCTAGGTAGCAACGGATGGTTCTCGTCGTCCATTGCGTTGTGTGGTGGTTTTTTTTGTTATGTATTCGGTAGGGAAT---A---AAATGTCATTAGTGCAAATATGATAGACATGACTGAC--AAAAGAT-----GAGTAGGGAAGT------AGGG-------GAAAAGGGTATATAATAGAAAGTAAGAACACGACAATCAATGGCC---GAGGGTTTTGCGGT-----------CGTCGCCCCAAAACGGGTCGAC-GCGGGATTACAGC-GCGCCAC-TTGCTCTTCTTTTCC----------ACCCATTTCTTTGGTTTCAAATTGTCAGTTCACAAATCGCTGGGCAGGTTTAGTTACTGGGCACTTTT-AAAA
s cb4.chrX              17494323 410 - 21540570 ataaaaattaccttctgggagtttcaaaaaacagagCCGGTCCTATCAACCCCAACAATGGAGCAGCTGGTATCCGTGCATCC------TCTTTACGAGGGAGCAACAGATGATTTTCATCTTCCATTA-------------------CGTATGATGTTTTGAAGAATAACAGTA---ACAAATCACTAGTTC-------CTGAGCATGACTGAcaagaaacttttgaaaaaagggtAAAAGAGTAGAAtgagag--gaaaagaagagtaTAATAGAAAGTAAGAACACGACAATCAATGGTCGAGAGGGGTTTTGCGGT-----------CGTCGCCCCAAAACGGGTCGAC-GTGGGATTACCGCAACGCCACTTTGCTCTTCTCTCTACACCCCCAACTCTGAGTTTCTTGCTTCCAATTTGTCAATA-------------GCCCG-TCAGTAAAT-GGCCCTTTTAAagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   265971 388 -  1794024 TTA------ACCTTCGAGGAGTTTCGAAAAACAACGCCGGTCCAATTAACCCCAGCAAAGGTGCACTGGACATTCGAGCATCC------TCTGTACGAGGTAGCAACGGATGGCTCTCGTCTTCCATT--------------------TTCCTAAGTTTTTAgtgaataac---a---aaaaattactaGTTTGAATATAATAGTCATGACTGAC--GAAATTT-----GAGAGGGtaaga------attgtgga--aaaaagaagagtataATAGAAAGTAAGAACACGACAATCAATGGTC--GGGGGGTTTTGCGGT-----------CGTCGCCCCAAAACGGGTCGAC-GCGGGATTACCGC-GCGCCAC-TTGCTcttctttccc--------------attttcttgCTTCAAATTTGTCAATGTG-AAATTGTTATGCAGGTTTAGTAACT-GGCCCTTAT-AAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    291460 385 +   484378 TAA------ACCTTCTGGGTGTTTCAAAGAACAGAGCTGGGCCGATCAGTCCGAGAAGTGGTGCAGCAGGAAGCCGAGCCTCC------TCTTTACGAGGAAGCAACGGATAGTTCTCGTCTTCCATT--------------------CTTCTATCGATTTGGAATACACC---A---AAAAATAGCTGGGAAGGGCATGGCGGTCATGACTGAC--AAAAGTT-----TAGGGGGTAAGA------ATAGTGAG---GGAAGAAGAGTATAATAGGAAGTAAGAACACGACAATCAATGGTC---GAGGGTTTTGCGGT-----------CGACGCCCCAAAACGGGTCGAC-GTGGGATTACCGC-GCTCCAC-TTGCTCTTCTTTCCC---------------ATTTCTTGCTTCCAATTTGTCAATGCA-AAATCGTTGAGCACGTTTAGTAACT-GGCCCTTTT-AAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3429742 389 -  4147112 TTA------ACCTTCTGGGTGTTTCAAAGAACAGAGCTGGGCCGATCAGTCCGAGAAGAGGTGCACCAGGTAACCGTTCCTCT------TCTTTCCGAGGAAGCAGTGGGTGACTCTCGTCTTCCATG--------------------ACTCTACGTTTTTGATGAACAAG---GAATAAAAACAACTAGAAATAATATGAATGTCATGACTGAC--AAAAGTT-----TAGAGGGTAAGA------ATAGTGTG--TGGAAGAAGGGTATAATAGGAAGTAAGAACACGACAATCAATGGTC---GAGGGTTTTGCGGT-----------CGTCGCCCCAAAACGGGTCGAC-GCGGGATTACCGC-GCGCCAC-TTGCTCTTCTTTCCC---------------ATTTCTTGCTTCCAATTTGTCAATGCA-AAATCGTTGAGTAGGTTTAGTAACT-Ggccctttt-caaa
i caePb3.Scfld02_0      C 0 I 1979
s caeJap4.Scaffold18213   565257 370 +   720316 tta------aCCTTCTCGGAGTCTCAAAGAACAGTGCCGGTCCGATCAATCCTAGCAATGGTGCGGAAGGAATCTGCTCATTTGTAGAATAATTTCGAGGAAGCAACGGATGACTCTCTTCCTCCATT--------------------TTT---AGCTTTTACATAGTGTC---A---------------------------GGACATAATTggc--gaaaaattcagaaatatgATGAGT------AAAGTGAGACGAAAAGGAAAGTATAATAGGAAGTAAGAACACGACAATCAATGGTC---GAGGGTTTTGTGGTCGTCTGTCGCCCGTCGCCCCAAAACGGGTCGACGGCGGGATTACCGC-GCGCCAC-------ttttctccc--------------attttcttGCTTCCAATTTGTCAATGCACCAATCGGTTT-----CTTGGTACTT------TTTT-AAAA
i caeJap4.Scaffold18213 I 226 C 0

a score=2580.000000
s ce10.chrX              2745366 11 + 17718866 GTTTGGAATTT
s cb4.chrX              17494733 11 - 21540570 attttgagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   266359 11 -  1794024 ATTTCATactt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    291845 11 +   484378 ATTTGAGACTT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   565627 11 +   720316 GTCAAAAAGTT
i caeJap4.Scaffold18213 C 0 I 435
e caePb3.Scfld02_0       3430131 1979 -  4147112 I

a score=-441.000000
s ce10.chrX              2745377  7 + 17718866 TC-----GGTTT
s cb4.chrX              17494744  7 - 21540570 tt-----gattt
i cb4.chrX              C 0 I 1547
s caeRem4.Crem_Contig15   266370  7 -  1794024 ta-----atttt
i caeRem4.Crem_Contig15 C 0 I 825
s caeSp111.Scaffold582    291856 12 +   484378 TTCACAGTATTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3430131 1979 -  4147112 I
e caeJap4.Scaffold18213   565638 435 +   720316 I

a score=614.000000
s ce10.chrX              2745384 17 + 17718866 GCACTGACT----GTTTTGAA
s caeSp111.Scaffold582    291868 21 +   484378 GTAATAACTCTAGGTTTTGAA
i caeSp111.Scaffold582  C 0 I 761
e caePb3.Scfld02_0       3430131 1979 -  4147112 I
e caeJap4.Scaffold18213   565638 435 +   720316 I
e cb4.chrX              17494751 1547 - 21540570 I
e caeRem4.Crem_Contig15   266377 825 -  1794024 I

a score=0.000000
s ce10.chrX              2745401 1735 + 17718866  
e caePb3.Scfld02_0       3430131 1979 -  4147112 I
e caeJap4.Scaffold18213   565638  435 +   720316 I
e cb4.chrX              17494751 1547 - 21540570 I
e caeSp111.Scaffold582    291889  761 +   484378 I
e caeRem4.Crem_Contig15   266377  825 -  1794024 I

a score=362.000000
s ce10.chrX              2747136 19 + 17718866 AATTTATTGAATTATGTTC
s caePb3.Scfld02_0       3432110 19 -  4147112 AATCTTCTAGATTttcccc
i caePb3.Scfld02_0      I 1979 C 0
e caeJap4.Scaffold18213   565638 435 +   720316 I
e cb4.chrX              17494751 1547 - 21540570 I
e caeSp111.Scaffold582    291889 761 +   484378 I
e caeRem4.Crem_Contig15   266377 825 -  1794024 I

a score=-4232.000000
s ce10.chrX              2747155 25 + 17718866 ATACAGAAAGATGCATCGG--AAC--AGT
s cb4.chrX              17496298 22 - 21540570 --ATGGAAGAAGATATTGC--GGAAT---
i cb4.chrX              I 1547 C 0
s caeSp111.Scaffold582    292650 21 +   484378 -cacaaaaaaaaggcTCGA--GGA-----
i caeSp111.Scaffold582  I 761 C 0
s caePb3.Scfld02_0       3432129 23 -  4147112 -agaaaaaaaaatgcatgatGAGA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565638 435 +   720316 I
e caeRem4.Crem_Contig15   266377 825 -  1794024 I

a score=2703.000000
s ce10.chrX              2747180 29 + 17718866 ATTTTCAAT--------AGATAAAAA------ATTGTAAAAAA
s cb4.chrX              17496320 25 - 21540570 ATCTCTAAT--------TTATAAAAA------GT----GGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   267202 31 -  1794024 ACTCTTAAT--------GGATAAAAAATAAGtat----aaaaa
i caeRem4.Crem_Contig15 I 825 C 0
s caeSp111.Scaffold582    292671 25 +   484378 ACTCCTaat--------ggatgaaaa------at----gagga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432152 33 -  4147112 ACGAATGATTGTTTGTAggataaaac------aa----gaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   565638 435 +   720316 I

a score=50331.000000
s ce10.chrX              2747209 151 + 17718866 AAGA-------AATCAT----------GAAGATGAA--------------CCGCATTGTGAGAAGAAAGTACATAATAAATCCAGGGATAGGGCAAAGGAAGGCGACCCGATGGG-TTGGTTTGGTTTTAATGGTGTCT---------TCTCACTCATTTATTTTCTCATTTTCATCTCGTGCT--GAATGTCA
s cb4.chrX              17496345 130 - 21540570 GAAA-------GAATAT----------GGGCA------------------------------ATGAAATTACGT-ATATAATTcagcaaag---aaaaaaattgggacctCAGGG-TAAGTTTAGG----ATGGAGTCCATCCTCATATCTCACTCATTTCGATTCTCATTTTTATCTC--------AATGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   267233 146 -  1794024 aaga-------gatcat----------GAAGATGAG--------------GC-----GAAAGAGGAAAGTACATCATAAATCTGAGGATAGGGCAAAAAGAAAGCGACCGATGTG-CCGGTTTTCGTTTAATGGAGTCT---------TCTcgctcatttattttttcattttcatttcgtGGC--GAATGTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    292696 153 +   484378 gaGA----GGAGATCAT----------GAAAATGAG--------------GCACATTGTGAGAAGAAAGTACATAATAAATCTGGGGATAGGGCAGAAGA---GAAGACGATGGG-TCGGTTTGGTTTTAATGGAGTCC---------TCtcactcatttcttttctcattttcattttgggcCCAAAATGTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432185 161 -  4147112 aagggcTTGGGGAACGTCTAATggataaaaaatgaa--------------gcacATTGTGAGAAGAAATCACATAATAAATCTGAGAATTGG--AGACG-------GCCGATGGG-CCGGTTCAGAATTAATGGAGTCT---------TTtcactcatttcttttctcattttcatttcctggCAGAAATGTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   566073 155 +   720316 AAGG-------GATCAT----------GAAAGAAAATTGTGGTCCCGTCCGCACATTGTGAGAAAAAAGTACATAATAAATTTGGGGATGGGGCAAAAGAGAATACTACGATGAATTTGGGTTCGGTTCAAATGAGCCC---------TTTTGcttactttcttt----tttttgcc---------gaaTGCCA
i caeJap4.Scaffold18213 I 435 I 46

a score=31810.000000
s ce10.chrX              2747360 52 + 17718866 AGAAAGGCTCCTCAAAACCAATAATCCGTGAAAGACTT-GCTTTTTTATTTTT
s cb4.chrX              17496475 52 - 21540570 AGAAAGGCTCCTCAAAACCAATAATCCGTGGAAACTCT-TCTCCCCTCTTCTT
i cb4.chrX              C 0 I 151
s caeRem4.Crem_Contig15   267379 53 -  1794024 AGAAAGGCTCCTCAAAACCAATAATCCGTGAAAACTCTCTCTTTCCTCCATCT
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    292849 53 +   484378 AGAAAGGCTCCTCAAAACCAATAATCCGTGGAAACTCTCcattccctcttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432346 48 -  4147112 AGAAAGGCTCCTCAAAACCAATAATCCGTGAAAACTC-----CCCCCATTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   566228 46 +   720316 I

a score=-11906.000000
s ce10.chrX              2747412 104 + 17718866 GGAAAATTTTTGTGTTCAATTGGCAGAGAAGATTTACCAGGTTTGATCGTAGAATATTGGAAAAAAAAACGCATAGTTACTTTTTAAATTTAAAGG---------------------------------TGGAGTCC
s caeRem4.Crem_Contig15   267434 106 -  1794024 -----TCCTTTATGTTCATTTGGGCAGGATGAGC--CAACGTTT----------CATTGGGTGAAA--------------CTCAGAAATATATAGGaaaaaaaGCCCTAACGATTAGAACATTGAACCGCGGATTCC
i caeRem4.Crem_Contig15 I 2 I 19
s caeSp111.Scaffold582    292902  30 +   484378 ---------tcatctcatttt---------------taatgTT------------------------------------------AAATTTAATAG-----------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432394  30 -  4147112 ---------CCATCTCCTTCT---------------CAATGTT------------------------------------------AAATTTGAAGG-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   566228  46 +   720316 I
e cb4.chrX              17496527 151 - 21540570 I

a score=422.000000
s ce10.chrX              2747516 13 + 17718866 CTATAgatcaaat
s caeSp111.Scaffold582    292932 10 +   484378 --ATGAGCTGAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432424 11 -  4147112 --ATGGGCTGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   566228 46 +   720316 I
e cb4.chrX              17496527 151 - 21540570 I
e caeRem4.Crem_Contig15   267540 19 -  1794024 I

a score=-12258.000000
s ce10.chrX              2747529 159 + 17718866 accattttaaaa-----------attcgataaat----tttttatttatttttataagatttt----ttgaaaataggaaacatctcAATTTGGCCACTGTTTTTATTTTCAATAAAT-GGCAGGAACTCAT--GAATTTC------CAATTTTTGACTGTttttttttgaaaacttttactgtgat
s caeRem4.Crem_Contig15   267559 128 -  1794024 ACTATGTTAAGCTTCCCAAAACGGCTTGATAGATGATATCGTAaagtgttttcaaa--ttttttgcgtTGAATACAA-------------------------CTG--GTACAGTCATAGGTAATGAAGTTTCCCAAATTTTCGTAAGAAAATATGGG------------------------------
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582    292942  96 +   484378 -----------------------GCTTTATAGAT-----------TTAATTTCATA--GTTCA----TTGGAAACAG-------------------------CTTC-TTATGATTAGA-ACTCTGAACTTTCGAGGGATTT------GAACTATAGAGCCTC-------TAGA--------GGt---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432435 104 -  4147112 -----------------------GCTTTATaggt-----------tcaaattcaaa--atttt----atgaaaaaag-------------------------ctTCTTTACGATTAGA-ACATTGAACTCc---ggatttt------gaaatatgaatcCTCGGTTGTTCAAA--------TGTGGT
i caePb3.Scfld02_0      C 0 I 49
e caeJap4.Scaffold18213   566228  46 +   720316 I
e cb4.chrX              17496527 151 - 21540570 I

a score=-2564.000000
s ce10.chrX              2747688 65 + 17718866 atttggccattttggctccacctgagtgttttttacaatttcgcaactggcgctactccatgttt
s caeRem4.Crem_Contig15   267687 45 -  1794024 GTTTGGTAGTTTCAGATATCTATAAATG-TGTTCATGATTGCCCAG-------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    293038 41 +   484378 aattgaaaactt--gttATTAAC--ATT-GCTTTACAATTTCACTA-------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3432539 49 -  4147112 I
e caeJap4.Scaffold18213   566228 46 +   720316 I
e cb4.chrX              17496527 151 - 21540570 I

a score=-2836.000000
s ce10.chrX              2747753 33 + 17718866 aaA----------AACCAAATAAACATGTATATACTTTTGAAA--------
s caeRem4.Crem_Contig15   267732 29 -  1794024 --------------ACCACAGAT--------AGATTTTCatgatatagaaa
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    293079 22 +   484378 -------------GACCCgataa--------aaagtttaaaaa--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3432588 36 -  4147112 aaatatgaagtagaacccaaaaag-------aaagtttcgaaa--------
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold18213   566228 46 +   720316 I
e cb4.chrX              17496527 151 - 21540570 I

a score=58.000000
s ce10.chrX              2747786 3 + 17718866 AAT
s cb4.chrX              17496678 2 - 21540570 -AA
i cb4.chrX              I 151 C 0
s caeRem4.Crem_Contig15   267771 2 -  1794024 -AA
i caeRem4.Crem_Contig15 I 10 C 0
e caePb3.Scfld02_0       3432624 0 -  4147112 C
e caeJap4.Scaffold18213   566228 46 +   720316 I
e caeSp111.Scaffold582    293101 0 +   484378 C

a score=198167.000000
s ce10.chrX              2747789 186 + 17718866 AAA-----CACTTACCGTCTACGATGAGGACTCGAGAACTTTCGTTCGTCGTCGATACAACTCGAATAGCTGGTCGATGGGGAGCGACTGTTAGTGTGCTCTCCCCGTTCGCTGCTCGATGCTGCTTCTTGAGCAGATAA---CGATTCGGCAGCTGATCGACCGAGAACTGACGCCCGACGGGCAGCCTGAAA
s cb4.chrX              17496680 190 - 21540570 AAA----GAACTAACCGTCTACGATGAGGACTGGAGAACTTTCGCTCGTCGTCGATGCAGCTGGAATAGCTGGTTGATGGAGAGCGACTGTTAGTGTGCTCTCCGCGATCGCTGCTCGACGCCGCCTCCGGCGCTGATAATAGTGTGTCGGCTGTTGTTCGACCGAGTAGTGACGCCCGACGGGCAGCctggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   267773 191 -  1794024 AACGCTTGAACTAACCTTCTGCGATGAGGGCTGGAGAACTTTCGTTCGTCGTCGATGCAACTGGAATAACTGGTCGACGGAGAGCGACTGTTAGTATGCTCTCCTCGTTCGCTGCTCGATGCAGCTTCTGGAGCAGATAA---CGAGTCGGCAGCTGTTCGACCGAGTACTGACGCCCGACGGGCAGCCTGGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    293101 183 +   484378 --------aacaaaccttcTGCGATGAGGACTCGAGAACTTTCGTTCGTCGTCGATGCAACTTGAATAGCTGGTCGACGGGGAGCGACTGTTAGTGTGCTCACCCCGTTCGCTGCTCGATGCCGCTTCTGGAGCAGATAA---CGATTCGGCAGCTGTTCGACCGAGTACTGACGCCCGACGGGCAGCCTGAAA
i caeSp111.Scaffold582  C 0 I 430
s caePb3.Scfld02_0       3432624 191 -  4147112 aatccccCAACTAACCTCCGGCGATGAGGACTTGAGAACTTTCGTTCGTCGTCGATGCAACTTGAATAACTGGTCGATGGGGAGCGACTGTTAGTGTGCTCTCCCCGTTCGCTGCTCGATGCCGCGTCGGGAGCAGATAA---TGATTCGGCAGCTGTTCGACCGAGTACAGAAGCCCGACGGGCagcctgaaa
i caePb3.Scfld02_0      C 0 I 1820
s caeJap4.Scaffold18213   566274 186 +   720316 AAA-----AACTGACCTTCTACGATGGGGACTAGAAAACTTTCGTTCTTCGTCGATGCAACTCGAATAGCTTGTGGAAGGCGATCGACTGTTAGTGTGATCGCCTCTCTCGCTGCTCGACGCCGCTTCTGGAGCCGATGA---CGATTCGGCAGCTGATCGACCGAGTAATGAAGCCCGACGGGCGGCCTGAAA
i caeJap4.Scaffold18213 I 46 C 0

a score=734.000000
s ce10.chrX              2747975 10 + 17718866 ATAATGATTT
s cb4.chrX              17496870 10 - 21540570 aaatttattg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   267964 10 -  1794024 ATATTGGATT
i caeRem4.Crem_Contig15 C 0 I 284
s caeJap4.Scaffold18213   566460 10 +   720316 ATATAAAGTT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3432815 1820 -  4147112 I
e caeSp111.Scaffold582    293284 430 +   484378 I

a score=-626.000000
s ce10.chrX              2747985 5 + 17718866 -GAGTT
s cb4.chrX              17496880 5 - 21540570 -aaatt
i cb4.chrX              C 0 I 1277
s caeJap4.Scaffold18213   566470 5 +   720316 GGCAT-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3432815 1820 -  4147112 I
e caeSp111.Scaffold582    293284 430 +   484378 I
e caeRem4.Crem_Contig15   267974 284 -  1794024 I

a score=319.000000
s ce10.chrX              2747990 7 + 17718866 TTTAAAC
s caeJap4.Scaffold18213   566475 7 +   720316 TTGAAGC
i caeJap4.Scaffold18213 C 0 I 318
e caePb3.Scfld02_0       3432815 1820 -  4147112 I
e cb4.chrX              17496885 1277 - 21540570 I
e caeSp111.Scaffold582    293284 430 +   484378 I
e caeRem4.Crem_Contig15   267974 284 -  1794024 I

a score=0.000000
s ce10.chrX              2747997 924 + 17718866  
e caePb3.Scfld02_0       3432815 1820 -  4147112 I
e caeJap4.Scaffold18213   566482 318 +   720316 I
e cb4.chrX              17496885 1277 - 21540570 I
e caeSp111.Scaffold582    293284 430 +   484378 I
e caeRem4.Crem_Contig15   267974 284 -  1794024 I

a score=451.000000
s ce10.chrX              2748921 42 + 17718866 AGAAAAA---ATCAAAATTAACATACTCATAATCAGAAAGATAAA
s caeRem4.Crem_Contig15   268258 44 -  1794024 aaaaaaagccACCAGAATTGCTGCAATCA-AATCTGGAGCTCAGA
i caeRem4.Crem_Contig15 I 284 C 0
e caePb3.Scfld02_0       3432815 1820 -  4147112 I
e caeJap4.Scaffold18213   566482 318 +   720316 I
e cb4.chrX              17496885 1277 - 21540570 I
e caeSp111.Scaffold582    293284 430 +   484378 I

a score=-95.000000
s ce10.chrX              2748963 19 + 17718866 CAACGAGA-TTTCTAATTTT
s caeRem4.Crem_Contig15   268302 19 -  1794024 -AAACACTACTTCTCTCTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3434635 19 -  4147112 CAAGGACC-TTGCTTACTTA
i caePb3.Scfld02_0      I 1820 C 0
e caeJap4.Scaffold18213   566482 318 +   720316 I
e cb4.chrX              17496885 1277 - 21540570 I
e caeSp111.Scaffold582    293284 430 +   484378 I

a score=3038.000000
s ce10.chrX              2748982 13 + 17718866 TTTTTTACAACAT
s caeRem4.Crem_Contig15   268321 13 -  1794024 TTTtagacacaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    293714 13 +   484378 TTCTATATACAAA
i caeSp111.Scaffold582  I 430 C 0
s caePb3.Scfld02_0       3434654 13 -  4147112 TTCTATATACAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   566482 318 +   720316 I
e cb4.chrX              17496885 1277 - 21540570 I

a score=6276.000000
s ce10.chrX              2748995 11 + 17718866 AGTTTTTGGAC
s cb4.chrX              17498162 11 - 21540570 aattggtGGAC
i cb4.chrX              I 1277 C 0
s caeRem4.Crem_Contig15   268334 11 -  1794024 aaattatggaC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    293727 11 +   484378 AAGTTATGGAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3434667 11 -  4147112 AAGTTATGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   566482 318 +   720316 I

a score=282049.000000
s ce10.chrX              2749006 554 + 17718866  
s cb4.chrX              17498173 537 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   268345 472 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    293738 472 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3434678 450 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   566800 481 +   720316  
i caeJap4.Scaffold18213 I 318 I 2472

a score=44370.000000
s ce10.chrX              2749560 124 + 17718866 TCTGCAAGATG---AGAGTGAGAACTACGAG-------------GCTCCCCCCGTCTTGTTTCTATTTCA---TTTT-CTCTGTTTGTTTTCTTCCTCATTTTTATTCGGACTCTGAGTAAGGTGGGAACTTTGAAATTCAAGA
s cb4.chrX              17498710 122 - 21540570 TGGGGCTGAGG------GTGAGAACGACGGTGGTCCGGCGGCGCGC------------gatgctgtttcaaa-attt-ttttgtttgttttcatcatcattttcatcCGAA--CCGAGTAAGGTGGGAATTTTGTAATctaaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   268817 103 -  1794024 TAGGGAAGAGG---AGAGTGAGAACTACGGT-------------GC------------GGtgctgtttcaaattttt-ttttgtttgttttcattcgACCTCTC------------AGTAAGGtgggaattttgaaatctaagA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    294210 103 +   484378 TAGGGGAGGAGAATAGAGTGAGAACTACGGC-------------GC------------GATGctatttcaaa----tattttgtttgttttcatccGACCTCTC------------AGTAAGGtgggaattttgaaatctaaGA
i caeSp111.Scaffold582  C 0 I 508
s caePb3.Scfld02_0       3435128 102 -  4147112 TATGGAGGAAGAATAGAGTGAGAACTACGGT-------------GC------------GATgctgtttcgaa----t-ttttgtttgttttcattcgACCTCTC------------AGTAAGgtgggaattttgaaatctaagA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I

a score=753.000000
s ce10.chrX              2749684 2 + 17718866 AA
s cb4.chrX              17498832 2 - 21540570 ga
i cb4.chrX              C 0 I 1422
s caeRem4.Crem_Contig15   268920 2 -  1794024 GA
i caeRem4.Crem_Contig15 C 0 I 1
s caePb3.Scfld02_0       3435230 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 I 553
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e caeSp111.Scaffold582    294313 508 +   484378 I

a score=391.000000
s ce10.chrX              2749686 4 + 17718866 TCGG
s caeRem4.Crem_Contig15   268923 4 -  1794024 TCGG
i caeRem4.Crem_Contig15 I 1 I 509
e caePb3.Scfld02_0       3435232 553 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    294313 508 +   484378 I

a score=0.000000
s ce10.chrX              2749690 1029 + 17718866  
e caePb3.Scfld02_0       3435232  553 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    294313  508 +   484378 I
e caeRem4.Crem_Contig15   268927  509 -  1794024 I

a score=119.000000
s ce10.chrX              2750719 55 + 17718866 AAGGCAACTTTCAGCTGA----CACCAAACAAATCAGCTGCGCTCCTAGGTTTTCACA-A
s caeRem4.Crem_Contig15   269436 53 -  1794024 AAAGCAATTTCCACCTGCTTTTCACCTGCCGAGTTGGCT-------CAGTATTCAACGGA
i caeRem4.Crem_Contig15 I 509 C 0
e caePb3.Scfld02_0       3435232 553 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    294313 508 +   484378 I

a score=27590.000000
s ce10.chrX              2750774 77 + 17718866 TACCTTTCTTATTGCTCGCATAGCAATCAGAATTTGTCGCTGACGCCGAATATCTGGAGAAAAAAGTAAAAGCATGA
s caeRem4.Crem_Contig15   269489 77 -  1794024 TACCTTTTTCAGCTCTCGCATTGTGATCAATATTTGACGCTGACGACGAATATCGGGAGATGAAAGTAAATGCATAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    294821 77 +   484378 TACCTTTCGCAATCCTCGCATTTCAATCAGAATTTGGCGCTGACGACGAATATCGGGAGAGGAAAGTAAAAGCATGA
i caeSp111.Scaffold582  I 508 C 0
s caePb3.Scfld02_0       3435785 77 -  4147112 TACCTTCCTCAGATTACGCATTCTAATCAATATCTGACGTTGACGACGAATGTCGGGAGACGATAGTAGAAGCATGA
i caePb3.Scfld02_0      I 553 I 699
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=-16140.000000
s ce10.chrX              2750851 320 + 17718866 CACTAGAGCAGAGGGACCGACAATATGGGTTTCAGTTGGAAAGTTCACTTTA--AAAAAAAGTGTAGAGCTCATAAACTGGTGTTCATGACACCATTAGAGTTTTTTTTACAGTAAGCT----TAATGT-----GACATCGTTTTTTTTGTTCAGAAActtaggctgaggctttggcttaggctttgacaaagatttaggtttaggcttaggcttagactggggcctagatttagTTGC----CTCAAAACGTTAGAATTAG---GTGAAACTTTTTTTTGTTGTTGGAAAAACACAAAAATTTCCCTGTGAAATATGTGATCAAACACTATATAATT
s caeRem4.Crem_Contig15   269566 225 -  1794024 TTTTCAAGCAAAGGAA--AACTATGTCGACT---------GACTTTGGgtta--aata-------------caaaaaaaggcGGT-ATGAAGTCATTAAA-------TTACAGTAGTCAGTGTCAATGAGCCGGGA-------------GTTGAAAAAT----------GGTGTCACTT---TATTAGTCGGCGTCCTTTGTTA---------------------------CCCGTCGAAATGCTAATTACAGTTAAATTAGATTGTAAA--------TAGCTAgtacgaa-----aaaaattt-----tga---acgtCATC-----CTAAATGATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    294898 150 +   484378 TAATCAAATGAACGAA--TTC--------CT---------AGTTTCGTCCCATCAAGA-------------CACAAAAGGGCTG-----------TCAAG-------CTACAGTAGGCA-----AATGA-----GA-------------ATTCGGAAat----------gttctcattt---ctctgGCT--CATTTCACGTTA---------------------------TTCGATGA----CTA--TACAGTGGA--------GTAA-------------TGGT----------------------------------------------ATAATT
i caeSp111.Scaffold582  C 0 I 36
e caePb3.Scfld02_0       3435862 699 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=-2413.000000
s ce10.chrX              2751171 129 + 17718866 TTCACTCATAATCAAACGCCAATTAGAAAAAAATCGAAAAAGTGAAATTTTCAGAAAAAGTAAATTTTTGAGCGTGATATTACTGGAACGGCTTGAAAATAGGCGCGATTGATGCTGGGATATAAAAGT
s caeRem4.Crem_Contig15   269791  49 -  1794024 ATCTTCCCTAG------------------------AAGAAAGTGAGACTAT--AAAAAAGT---------------ATACAACCTACACA---------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3435862 699 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    295048  36 +   484378 I

a score=-4854.000000
s ce10.chrX              2751300 97 + 17718866 TTTCAGAAAATCGCGATTTC-TCACCCTAAT------ATACAAAATCTCATGACATTATGAACTGCAGGACATTGGAGAGAAAAAAAAACGAAATAACGCATAC
s caeRem4.Crem_Contig15   269840 59 -  1794024 TCTCTCAAAATGTTTACCTA-TCTCTCGAGA------CTAGAACATCTT---------------------CATCAGAC---AAG--------------CCATTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    295084 80 +   484378 -tttcaaaaatttttgcttaGTCTGACTAAAAATAATCCAGCGACTTTT---------------------tacaaaactgaaagaaatagTGAATGA-TCATC-
i caeSp111.Scaffold582  I 36 C 0
e caePb3.Scfld02_0       3435862 699 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=18530.000000
s ce10.chrX              2751397 45 + 17718866 ACACAATTCGAGAAGCGTCGAATATTATAATATCAAATAACTAGA
s caeRem4.Crem_Contig15   269899 45 -  1794024 ATGCAATCCGAGGAGcatcaaaaattataatatcAAATAACGATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    295164 45 +   484378 TCGAAATCCGAGGAGCATCGAATATTATAATATCAAATAGCTAGA
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3436561 45 -  4147112 ACGAAATCTGAGGagcatcaaaaattataatatCAAATAACTAGA
i caePb3.Scfld02_0      I 699 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=-1986.000000
s ce10.chrX              2751442 6 + 17718866 AGATGC-----
s caeRem4.Crem_Contig15   269944 6 -  1794024 --TAgcaa---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3436606 6 -  4147112 -----CGAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    295209 16 +   484378 I

a score=-996.000000
s ce10.chrX              2751448 21 + 17718866 ACACATCTACTATACTTGTTT-
s caeRem4.Crem_Contig15   269950 11 -  1794024 -----------agaattttttt
i caeRem4.Crem_Contig15 C 0 I 36
s caeSp111.Scaffold582    295225 21 +   484378 ACACTTCTACtcaagttcttt-
i caeSp111.Scaffold582  I 16 I 15
s caePb3.Scfld02_0       3436612 18 -  4147112 ---ATGTTACGTGGGTTCTTC-
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=0.000000
s ce10.chrX              2751469 11 + 17718866 GACAACGGGCT
e caePb3.Scfld02_0       3436630  3 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    295246 15 +   484378 I
e caeRem4.Crem_Contig15   269961 36 -  1794024 I

a score=-758.000000
s ce10.chrX              2751480 37 + 17718866 AAACTGGGAATGTGTAAGAAAGAGAGAGCGAGAGGAC
s caePb3.Scfld02_0       3436633 11 -  4147112 -------------------------GAGCTAGTTGA-
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    295246 15 +   484378 I
e caeRem4.Crem_Contig15   269961 36 -  1794024 I

a score=0.000000
s ce10.chrX              2751517 1 + 17718866 G
e caePb3.Scfld02_0       3436644 0 -  4147112 C
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I
e caeSp111.Scaffold582    295246 15 +   484378 I
e caeRem4.Crem_Contig15   269961 36 -  1794024 I

a score=6413.000000
s ce10.chrX              2751518 45 + 17718866 AGAATGCACGGAAACCTATATGAACTCTTATATTAAAAAAGAGTT-
s caeRem4.Crem_Contig15   269997 40 -  1794024 AGAACACACGAATACCCATATAATCCTTC------GAGGTAAGTTT
i caeRem4.Crem_Contig15 I 36 C 0
s caeSp111.Scaffold582    295261 39 +   484378 AGAACACTCTGATACTTTCATAATCCTAT------AGAAAgagtt-
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3436644 39 -  4147112 AGAACACTCTGATACCTACATAATCCCAT------GCATGAagtt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17498834 1422 - 21540570 I

a score=99247.000000
s ce10.chrX              2751563 781 + 17718866  
s cb4.chrX              17500256 703 - 21540570  
i cb4.chrX              I 1422 I 291
s caeRem4.Crem_Contig15   270037 738 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    295300 743 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3436683 665 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I

a score=-808.000000
s ce10.chrX              2752344 3 + 17718866 -CGC--
s caeRem4.Crem_Contig15   270775 6 -  1794024 TGGCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    296043 3 +   484378 -AGC--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3437348 3 -  4147112 -TGC--
i caePb3.Scfld02_0      C 0 I 250
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17500959 291 - 21540570 I

a score=-520.000000
s ce10.chrX              2752347 2 + 17718866 -CG
s caeRem4.Crem_Contig15   270781 2 -  1794024 CC-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    296046 2 +   484378 -CG
i caeSp111.Scaffold582  C 0 I 263
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17500959 291 - 21540570 I

a score=632.000000
s ce10.chrX              2752349 120 + 17718866 TGTCACTGAGACTTGCTACATTGTTATAGTGGGAATACTAGTAGTAGTCACAA-----ATCCTGCTATTGTTTTCAAATGTATTATTCAAACCGGATTTTATCAGATTTGCTATCCGGTTACTTA
s caeRem4.Crem_Contig15   270783 103 -  1794024 TGCTACTACTACT------attatt---------ctactttttttaGTCACCAACAATATCCGCCTATTGTATGATCATGCATTCATCAa-------ttcagctgttttttttttgagttactCA
i caeRem4.Crem_Contig15 C 0 I 171
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17500959 291 - 21540570 I
e caeSp111.Scaffold582    296048 263 +   484378 I

a score=0.000000
s ce10.chrX              2752469 888 + 17718866  
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17500959 291 - 21540570 I
e caeSp111.Scaffold582    296048 263 +   484378 I
e caeRem4.Crem_Contig15   270886 171 -  1794024 I

a score=382.000000
s ce10.chrX              2753357 4 + 17718866 GATC
s caeSp111.Scaffold582    296311 4 +   484378 GATC
i caeSp111.Scaffold582  I 263 C 0
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e cb4.chrX              17500959 291 - 21540570 I
e caeRem4.Crem_Contig15   270886 171 -  1794024 I

a score=-1194.000000
s ce10.chrX              2753361 11 + 17718866 AAAAAAAGGTA---
s cb4.chrX              17501250 11 - 21540570 ---aaagGGGGGCA
i cb4.chrX              I 291 C 0
s caeSp111.Scaffold582    296315 10 +   484378 ---AACTGATGGA-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I
e caeRem4.Crem_Contig15   270886 171 -  1794024 I

a score=-3352.000000
s ce10.chrX              2753372 15 + 17718866 ATATGAATAACTATT---
s cb4.chrX              17501261  7 - 21540570 -----------AAATCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   271057 13 -  1794024 ---ACATGAAAAAATC--
i caeRem4.Crem_Contig15 I 171 C 0
s caeSp111.Scaffold582    296325 15 +   484378 ATACCAGCAACTAAC---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3437351 250 -  4147112 I
e caeJap4.Scaffold18213   567281 2472 +   720316 I

a score=4830.000000
s ce10.chrX              2753387 28 + 17718866 --------TAATTTTCGATGGATGATGGTCATCTTC
s cb4.chrX              17501268 29 - 21540570 CAAGTTGCTGATTTTC-------GGTGGTCATACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   271070 25 -  1794024 ----CTACTGATTTTC-------GATggttatactt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    296340 20 +   484378 --------TGATTTTC-------GGTGGTCATACA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3437601 20 -  4147112 --------TGATTTTC-------GATGGTCTGCTA-
i caePb3.Scfld02_0      I 250 C 0
e caeJap4.Scaffold18213   567281 2472 +   720316 I

a score=146882.000000
s ce10.chrX              2753415 218 + 17718866 ACGC-GTCTCCAC-GTCTGCATAAATAAACTACGTTTT---GTGGTTGTGGAAG--CCACG-GGGAAAACGTTGAGGAAGTTTAATAAAACACGAATAGAAGACGAGTGGGATGTTGTAGA--AGAGCAGTACACACACACACACGGTTGGAAGAAACGGGACAACGGGGGGTTACGTT--------GTGACATAACAAGTATGAGCAA--AAA-AGAAGT-AATGCAACTTTTTTTTTG
s cb4.chrX              17501297 206 - 21540570 GTCTACTTTCCATGGTCTGCATAAataaaatac--------gtttttgtggAAGGTCCAcaggaaaaa---ttgaggaaGTTTAATAAAACACGAATAGAAGACGAGTGGT---------G--GGTCCCG-----CGACACACACGGGAGA--AAAAAGGGACAA-GAGGGGTTACGCTC--TTCTGGTGACATAACAAATATGAGCGGTCCCA-AGGAGT-aatgcaactttttttttg
i cb4.chrX              C 0 I 151
s caeRem4.Crem_Contig15   271095 202 -  1794024 -----tttttcac-gTCTGCATAAATAAAATACGCATTGTGGTTGTGGTGGAAG--Ccaca-gaaaaa---ttgaggaagTTTAATAAAACACGAATAGAAGACGAGTGGG---------GTTGGGGTCG-----GGGGGCACACGGGAG---AAAAAGGGACA---AGGGGTTACGCTC--TTCTGGTGACATAACAAGTATGAGCGG--CTA-AGAAGT-AATGcaacttttcttctt
i caeRem4.Crem_Contig15 C 0 I 14
s caeSp111.Scaffold582    296360 202 +   484378 -----CTTTTCAC-GTCTGCATAAATAAACTACGTTTT---GTGGTTGTGGAAG--ccaca-gaaaaa---ttgaggaaGTTTAATAAAACACGAATAGAAGACGAGTGGG----TAAAGG--GGGGTGA-----GCACATACacgggaag--aaaaagggaca---AGGGGTTACGCTC--TTCTGGTGACATAACAAGTATGAGCGC--CAA-TGCAGT-AAtgcaacttttttatt-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3437621 202 -  4147112 -----CTTTTCAC-GTCTGCATAAATAAAATACGTTTT---GTGGTTGTGGAAG--CCacg-gaaaaa---ttgaggaagttTAATAAAACACGAATAGAAGACGAGTGGG-----GTAGG--GGGGTGA-----GCACATACacgggaagaaaaaaagggaca---AGGGGTTACGCTC--TTCTGGTGACATAACAAGTATGAGCGG--CGA-AGAAGTAAATGCAACTTTTTCA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   569753 188 +   720316 ACTC-CTCTGCAC-GTCTGCACAaataaaatacgttttt--gtGGTGGTGGAAG--CGACC-GAAAAA---TTGAGGAAGTTTAATAAAACACGAATAGAAGACGAGTGGG---------G--AGG---------GGCTACACACGGGTGG----------ACA---AGGAGTTACGCTCTTTTCTGGTAACATAACAAGTATGAGCGG--CGGCAAGAGT-AATGCGACtttt------
i caeJap4.Scaffold18213 I 2472 C 0

a score=820.000000
s ce10.chrX              2753633 9 + 17718866 TTCATATAT
s caeRem4.Crem_Contig15   271311 8 -  1794024 ttcacaaa-
i caeRem4.Crem_Contig15 I 14 I 1
s caeSp111.Scaffold582    296562 9 +   484378 ctcgtATCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3437823 9 -  4147112 CTCGTATCT
i caePb3.Scfld02_0      C 0 I 107
s caeJap4.Scaffold18213   569941 9 +   720316 tccacataa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17501503 151 - 21540570 I

a score=273.000000
s ce10.chrX              2753642 1 + 17718866 T
s caeSp111.Scaffold582    296571 1 +   484378 T
i caeSp111.Scaffold582  C 0 I 642
s caeJap4.Scaffold18213   569950 1 +   720316 t
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3437832 107 -  4147112 I
e cb4.chrX              17501503 151 - 21540570 I
e caeRem4.Crem_Contig15   271319 1 -  1794024 I

a score=2402.000000
s ce10.chrX              2753643 24 + 17718866 ATTTGATGTGTTTTTTTGCAACTT
s caeRem4.Crem_Contig15   271320 24 -  1794024 atttgaaggattttctTGTCATCT
i caeRem4.Crem_Contig15 I 1 I 44
s caeJap4.Scaffold18213   569951 24 +   720316 ttttggaaggtttttttttatctt
i caeJap4.Scaffold18213 C 0 I 677
e caePb3.Scfld02_0       3437832 107 -  4147112 I
e cb4.chrX              17501503 151 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I

a score=0.000000
s ce10.chrX              2753667 13 + 17718866 AACTAACACACTT
e caePb3.Scfld02_0       3437832 107 -  4147112 I
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501503 151 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I
e caeRem4.Crem_Contig15   271344 44 -  1794024 I

a score=-329.000000
s ce10.chrX              2753680 37 + 17718866 ACCGTCAAGTGTAAACAGATAAATTGGATTTCCG-------AAA
s caeRem4.Crem_Contig15   271388 44 -  1794024 TCTAGTAGGTGCTATCGAACCTCTCAGATTTCTGTCTCCGAGTA
i caeRem4.Crem_Contig15 I 44 C 0
e caePb3.Scfld02_0       3437832 107 -  4147112 I
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501503 151 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I

a score=347.000000
s ce10.chrX              2753717 14 + 17718866 AAAGTTCAGCGAAT
s caeRem4.Crem_Contig15   271432 10 -  1794024 AAAGTTCAAG----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3437939 11 -  4147112 AAAGTTCACGA---
i caePb3.Scfld02_0      I 107 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501503 151 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I

a score=12824.000000
s ce10.chrX              2753731 40 + 17718866 GCGTACTATAATGAATTATTGATAGACAATGTCTGTATAA
s cb4.chrX              17501654 40 - 21540570 GCGTAGTGTGATAAATTATTGATGAAAGACGTCTGTGTAA
i cb4.chrX              I 151 I 1493
s caeRem4.Crem_Contig15   271442 40 -  1794024 ACGTACTGTGATAAATAATTGATGGACGACGTCTGTGTAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3437950 39 -  4147112 -CCTTTTTTGCTAAATAATTGATGAGAAACGTCTGTGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I
e caeSp111.Scaffold582    296572 642 +   484378 I

a score=1251.000000
s ce10.chrX              2753771 20 + 17718866 --------TTTACGTATCTAGTTTCACA
s caeRem4.Crem_Contig15   271482 23 -  1794024 ----CGTAGTGA-GTATCCTGTTTCCCA
i caeRem4.Crem_Contig15 C 0 I 503
s caePb3.Scfld02_0       3437989 28 -  4147112 GGTACGCCGTTAGGTGTCCTGTTTCGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501694 1493 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I

a score=-31.000000
s ce10.chrX              2753791 1 + 17718866 G
s caePb3.Scfld02_0       3438017 1 -  4147112 A
i caePb3.Scfld02_0      C 0 I 125
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501694 1493 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I
e caeRem4.Crem_Contig15   271505 503 -  1794024 I

a score=0.000000
s ce10.chrX              2753792 148 + 17718866 CTCTCGAGATTGTTGTACGCTTGCTTGTTCTATAGGAAATGCTGTTAAAATATTGTAAGGAATttaaaggaggattatcggtattttgaacgtatccacgcaatatgttctcaaagaaatgaattctgtaattaaatttctcaaaaaa
e caePb3.Scfld02_0       3438018 125 -  4147112 I
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501694 1493 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I
e caeRem4.Crem_Contig15   271505 503 -  1794024 I

a score=-3203.000000
s ce10.chrX              2753940 757 + 17718866  
s caePb3.Scfld02_0       3438143 603 -  4147112  
i caePb3.Scfld02_0      I 125 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501694 1493 - 21540570 I
e caeSp111.Scaffold582    296572 642 +   484378 I
e caeRem4.Crem_Contig15   271505 503 -  1794024 I

a score=5103.000000
s ce10.chrX              2754697 22 + 17718866 TGTCGAATAGTATTATATGGGA
s caeRem4.Crem_Contig15   272008 19 -  1794024 TGTCGAATACTATTatgtg---
i caeRem4.Crem_Contig15 I 503 C 0
s caeSp111.Scaffold582    297214 20 +   484378 TGTCGAATACTATTATGTGA--
i caeSp111.Scaffold582  I 642 C 0
s caePb3.Scfld02_0       3438746 18 -  4147112 --TCCAATAGTATAATGTGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I
e cb4.chrX              17501694 1493 - 21540570 I

a score=2625.000000
s ce10.chrX              2754719 209 + 17718866 AAAAAACTGACAGCTTTATTACTCAGCGCA-CAAGCTTATCG--CCG-----CGACACTGACACTAACGACAATGGGAGACAGAATTCATGACCAAAAGAGC------ATGTTAATGC---AGTATTTGTCCA--------CATTAGCCGAACCAATGGGA-------AAAGTTATCCAACGTAGTAGTGAAGTGGAAAGATTGGGTAAAAG---------------------------AAAAATTACAAGAAATATCACGCATCGTG
s cb4.chrX              17503187 162 - 21540570 aaaaaactGACAGATTTATTACTTGGCACA-AAGACTTAT-G--CTGTCCCCTTACACTGTCACTAACGACGAT-----TTATGGGAAAT-GCCTAAAGGGCACACAA------------------------AATGAA---CAGCAATCTATCC-------------------------CTGGGATCTCAGAAGGTACAAGCTAgggaaa------------------------------atagctaaaaa--------------gtC
i cb4.chrX              I 1493 C 0
s caeRem4.Crem_Contig15   272027 229 -  1794024 aaaaaagtgacagCTTTATTACTCCACGCACAAGACTTATCG--TTG-----CGGCATTGACACTAACGACAAT-----TGGTGGTTCGTGGTCGAAAGAGCACAAGGATGTTAATGC---TGTACTCGTCTAGAGCA---CATTAGTCTACCCAAAGAGATTTATGTAAAACGAACGATGAGAAAGTTAGAAAGCG-AAACTAGGAAGAAGAACAAAATGTG----------------GAGAGCTAAGAACTAAA----ACATCGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    297234 172 +   484378 -AAAAACTGACAGCTTTATTACTCAGCGCGCCAGGCTTATCGGTCTG-----CGGTCCTGACACTAACGACCTTGTGAGCCGGGGTTGATGACCGAAAGTCCGT----ATGTTAACTTCGCCATTCTACATTGCTCAGCC-TACCAAT------------------------------------------GAGtatgaagaaaacaacaa-----------------------------taaaTCTAAAA--------------TTTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3438764 235 -  4147112 -AAAAACTGACAGCTTTATTACTCAAAGGGTCTGGCTTATCG--CTT-----TGGTCCTGACACTAGCGACAATGGGAGCGAGGGTTCACGACTCAAAGTGCGCAAGAATGTTAACTT---TATACTAGACTGGTGGGTCACATTAGTGTAGTTTAGTGGT------------------CTGGGATGTTGGAGTacaaaaaatagatgaagTACAGATATATTGTAGATTTGGTGGGTCTAAGactaaaaatgaga----agtttttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   569975 677 +   720316 I

a score=99846.000000
s ce10.chrX              2754928 189 + 17718866 TTTACCTTTTTTATAAAGTCCAGCATAGCAACA---CATGTTTCAAAGTTTTCATGGATAGAGAAGAAGTGG-GAATATTGGAAAGAAAGG---GTTTTGAAGTGTAACCATGGAAAA-----AGA-----TTCGGCAGTGCTTTCATTGTTCATCAAAAACCTCATTTCCAACATTTCTAACTTCCGGTA-CCTAATCGTTCTCGC
s cb4.chrX              17503349 191 - 21540570 TTTACCTGTCTTATGAAATTCAACATTGTCAGT---CATGTTTCGA------CATGGGAAGAATGAGCGGAAGGTTTTTGGATGGAGAATGCACCCatcagattttgaaagtcAGAAGCAGACAGAGGCTGCTC-CCAGC-CCTTTATTGTTCACCCAAAACC-----TTCAACATTCTCACCTTCCGGTAGCCTAATCGTTCTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   272256 191 -  1794024 TTTACCTTTCTTATGAAATCCAACATGGTCAGT---CATGTTTCGAAAAGCGCATGGACAGAATGGACGGAA-ATATTTTAAGGAAGAATG---GCATCAGAGTTTG-AATTCGAAAGTTGACTGA-----CTT-GCGAC-TTTTCATTGTTCACCGAAAACCTCATTTCCAACATTCCTACCTTCCGGTA-CCTAATCGTTCTTGC
i caeRem4.Crem_Contig15 C 0 I 86
s caeSp111.Scaffold582    297406 191 +   484378 ATTACCTCTCTTATGAAATTCAGCATGGTGAGA---CATGTTTCGAAACGCGCATGGACAGAATATACTGAA-AGAATGAGGCGAAGAATA---GCATCGCGGTTTTGAGTTAGAAAGTCGACCGA-----TTC-GGGACCCTTTCATTGTTCACCAAAAACCTCATTTCCAACATTCCCACCTTCCGGTA-CCTAATCGTTCTT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3438999 193 -  4147112 TTTACCTTTCTTATGAAATCCAACATGGTCAGA---CATGTTTCGAAACTTGCATGGACAGAATAGACTAAC-AGAATGTGTGAAAGAATG---GCATAGCCGTTATGATGTGGAAAGTCGACCGA-----CTT-GAGGCGCTTTCATTGTTCACCAAAAACCTCATTTCCAACATTCCTACCTTCCGGTA-CCTAATCGTTCTtgc
i caePb3.Scfld02_0      C 0 I 76
s caeJap4.Scaffold18213   570652 171 +   720316 tttacctttcttatGAAGTCCAACATTGTCAGAAAGCATGTTTCGAAACGCGCATAGACAGCT----------TCAATGTGACAAGGAATG---G----GGAGTTTGGCTAGGAAAAG-------------CTT-GGA---TTTTCATTGTT-ACCGAAAACCACATTTCTAACATTTGAACCTGCCGGCT-TTTAATCGTTTTCAC
i caeJap4.Scaffold18213 I 677 C 0

a score=100.000000
s ce10.chrX              2755117 1 + 17718866 C
s caeJap4.Scaffold18213   570823 1 +   720316 C
i caeJap4.Scaffold18213 C 0 I 136
e caePb3.Scfld02_0       3439192 76 -  4147112 I
e cb4.chrX              17503540 0 - 21540570 C
e caeSp111.Scaffold582    297597 0 +   484378 C
e caeRem4.Crem_Contig15   272447 86 -  1794024 I

a score=-580.000000
s ce10.chrX              2755118 40 + 17718866 GACTTTTTATTCACTTTCACCATCCCCGATTTCTGACTTT------
s cb4.chrX              17503540 33 - 21540570 ----TTTCAT--AGTTTCATTTTA-GCGCTGtctactttt------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    297597 38 +   484378 --CCTTTCAT--ACTCTCAACCTC----CTTCCTACTTCTGGCTCT
i caeSp111.Scaffold582  C 0 I 45
e caePb3.Scfld02_0       3439192 76 -  4147112 I
e caeJap4.Scaffold18213   570824 136 +   720316 I
e caeRem4.Crem_Contig15   272447 86 -  1794024 I

a score=524.000000
s ce10.chrX              2755158 7 + 17718866 TTTCAAA
s cb4.chrX              17503573 7 - 21540570 tttcgaa
i cb4.chrX              C 0 I 56
e caePb3.Scfld02_0       3439192 76 -  4147112 I
e caeJap4.Scaffold18213   570824 136 +   720316 I
e caeSp111.Scaffold582    297635 45 +   484378 I
e caeRem4.Crem_Contig15   272447 86 -  1794024 I

a score=0.000000
s ce10.chrX              2755165 724 + 17718866  
e caePb3.Scfld02_0       3439192  76 -  4147112 I
e caeJap4.Scaffold18213   570824 136 +   720316 I
e cb4.chrX              17503580  56 - 21540570 I
e caeSp111.Scaffold582    297635  45 +   484378 I
e caeRem4.Crem_Contig15   272447  86 -  1794024 I

a score=293.000000
s ce10.chrX              2755889 14 + 17718866 AAAGTAAGAAGGCT
s caePb3.Scfld02_0       3439268 12 -  4147112 AAAGTGAAAGgg--
i caePb3.Scfld02_0      I 76 I 1
e caeJap4.Scaffold18213   570824 136 +   720316 I
e cb4.chrX              17503580 56 - 21540570 I
e caeSp111.Scaffold582    297635 45 +   484378 I
e caeRem4.Crem_Contig15   272447 86 -  1794024 I

a score=-706.000000
s ce10.chrX              2755903 10 + 17718866 AGAC-GAGCAC
s caeRem4.Crem_Contig15   272533  9 -  1794024 AGAG-gagac-
i caeRem4.Crem_Contig15 I 86 C 0
s caeSp111.Scaffold582    297680 10 +   484378 AGAA-GAGTAT
i caeSp111.Scaffold582  I 45 C 0
s caePb3.Scfld02_0       3439281 11 -  4147112 agaacaaaaat
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213   570824 136 +   720316 I
e cb4.chrX              17503580 56 - 21540570 I

a score=20096.000000
s ce10.chrX              2755913 116 + 17718866 AAAA----AAAACTCGACAAAAATAGGGAAATGTAATTGAACAACAAAGCGGTTG-TATGTACACTTTTGGTGCCGGTGCAAG--------GAAAAAAAAGACACTC----------------------AGGG-------CGCCGGGGGCGACGTACA
s cb4.chrX              17503636 138 - 21540570 aaaa----aaaact---caaaatttaggATATGTAATGGCACAACAA-GTTGGCG-TTTGTACTCTTT---TGTCGGTGCTTG--------AAAACGGAGGACCTCCCTTTCCTTCCGTTTTCGGAACGAAGGAAGCGAAAAAACTGGGCGCCGTACA
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig15   272542 123 -  1794024 aaaatttgaaaact---caaaaattagaaaatgaaatatcacAACAC-GATCGTG-GTCGTACATTCT---TTTCGGTGCTAG--------AAAAC-GAGGCCCCCC-----------------GAAC-AAGGaaaaaaaCGAGCCGGGCGCCGTACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    297690 128 +   484378 ------CAAACAAC---TAAAAATTGGAATAcgtaatgaaaaaaaaacatagaCGAGTTGTACACTTT---TGTCGGTGCTCCATGaaaaaaaGACGGGGGCACTCCACTTTCCC--------------AAGAACGAATGCG----GGACGCCGTACA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3439292 116 -  4147112 ------tgaaaact---caaaaattgggaTATGTAATGGCACAACAA-GTAGGCG-GTTGTACACTTT---TGTCGGTGCTCC--------AAAAC---TGCGCCccttttttca--------------cagaaaaaaaacg---cgGGCGCCGTACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   570824 136 +   720316 I

a score=204380.000000
s ce10.chrX              2756029 321 + 17718866 CGTTTTGATAAGCAGAGTTTGTCTGGGTGGTGGTGTCAAAGGG-AA---------AGAGAGGGCTTCCTCGAAAGGAAAGAAAAAAT-GAAAACAAAAAGAATTGGAAAACGCGGCAAAAACGGCAAGAATAAATACTTTTGCGGAAGAGTGAACACGTAATGTTTCTCAGGGGATACTCGTCCG----------AGCGCCTTG--AAATAATTTGTGGTGACA-----CATACGTTCTACCTGATAGCGAAGGAAAAGAAAAA--------------CCTGCT-------GAACTCACTTCAATAACTGCAGTTGGAAAGTCGATTGAGGGTCGTGGCGTTGCATCTTCATACCCTGCATACCCTGAAA
s cb4.chrX              17503774 330 - 21540570 CGTTTTGATAACCAGCGTTT-TCTGGGTGGTGGTGTCAAACGG-GGCGGCATAGAAGAGC-ACCACCACAGaccgaaaaaaggaaaa-gaaaacaaaaaagatttgaaaacgcgg---aaaagGCAATAATAAATACTTTTGCGGAAGGGTGAACACGTAATGTTTCTCATGGGATACTCGCTCTGTGCGGCTCCCGGTCATCCACAAATTATTTGTGGTGACATTCCCCAAA-----CACCtgat----------agaaaatt--------------tttttcagg----gaacCTACCTCAATAACAGCCGTTGGGAAATCGATGGACGGACGAGGAGTTGCATCTTCATAGCCAGAATAACCtgtaa
i cb4.chrX              C 0 I 1161
s caeRem4.Crem_Contig15   272665 297 -  1794024 CGTTTTGATAACCAGCATTT-TCTGGGTGGTGGTGTCAAAGGA-GG---------AGag---------------gcaaaaagaaaaa-gaaaac-aaaaagatttgaaaacgcgg---aaaagGCAAGAATAAATACTTTTGCGGAAGAGTGAACACGTAATGTTTCTCATGGGATACTCGCGCT----------TGGCCCCTCGAAAATAATTTGTGGCGACA-----CAAACACTTCACCtgataag------aagaaaaca--------------cAGAACAGG-------CTTACCTCAATAACTGCTGTCGGAAAATCAATTGATGGTCGTGGAGTTGCATCTTCATAGCCAGAGTAACCTATAA
i caeRem4.Crem_Contig15 C 0 I 1301
s caeSp111.Scaffold582    297818 296 +   484378 CGTTTTGATAACCAGCGTTT-TCTGGGTGGTGGTGTCAAAGGAGGG---------AGAg---------------gcaaaaaggaaaa-gaaaacaaaaaagatttgaaaacgcgg---aaaagGCAAGAATAAATACTTTTGCGGAAGAGTGAACACGTAATGTTTCTCATGGGATACTCGCCCT----------TAAGCCCTCA-AAATAATTTGTGGTGACA-----CGAGCATTTTACCTGATAAGGAATCGAATAAAA-----------------------------AGACTGACCTCAATGACTGCCGTCGGAAAGTCGATAGAAGGGCGTGGAGTAGCATCTTCATAACCTGAGTAACCTGAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3439408 303 -  4147112 CGTTTTGATAACCAGCGTTT-TCTGGGTGGTGGTGTCaaagga-gg---------agag---------------g-aaaaaggaaaa-gaaaac-aaaaagatttgaaaacgcgg---aaaaggCAAGAATAAATACTTTTGCGGAAGAGTGAACACGTAATGTTTCTCATGGGATACTCGCCCT----------TGCTCCTCCA-AAATAATTTGTGGTGACA-----CCCATATTTTACCTGATAagtaaactagaaaaat-------------------acaagaaatgaACTCACTTCAATAACAGCAGTTGGAAAATCAATGGAAGCCCGCGGAGTAGCATCTTCATACCCCGAATAACCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   570960 311 +   720316 CGTTTTGATAAGC--------T---GGTGTTGATGACAAAGGAACg---------agaa---------------gaaaaatggaaaatgaaaacaaaaaaaattgaaaagacgGG---GAAAGAGAGGAATAAATACTTTGGCAAAAGAGTGAACACGTAATGTTTCTCAGGGGATACCC---------------TTTGCCCCCAAAAATCATTTGT-GTGACA-TAGACGGACGCCCTACCTGATAGTGTCTCTGGGGAATTTATGAATTCTGGAACCATAAAAGC----GTACTAACCTCAATGACGGCGGTCGGGAAGTCGATTGAAGGACGAGGAGTTGCATCTTCGAATCCAACATAACCTGTAA
i caeJap4.Scaffold18213 I 136 C 0

a score=-352.000000
s ce10.chrX              2756350  3 + 17718866 --------------CAT
s caeJap4.Scaffold18213   571271 17 +   720316 GTAAGTCTCTTTTTAAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3439711  0 -  4147112 C
e cb4.chrX              17504104 1161 - 21540570 I
e caeSp111.Scaffold582    298114  0 +   484378 C
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-7986.000000
s ce10.chrX              2756353 79 + 17718866 GTGGAAAGTTTTCATGTAT------------ACAATATT-TAATTTATGTTTTTGAAGTGGAGAA--TTAATTTTAAATTGAAATTA-----------TTGAAAA
s caeSp111.Scaffold582    298114 65 +   484378 -------------ATTGGT------------ATTAC-----------AGTATGAAAAATGTTAAG----AAACGTTACttaaacttttaaaaacttttttcaaaa
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0       3439711 54 -  4147112 -----------TTATCAAT------------ATAAT-----------TATTTCCAAAGTG----------AATTTCCAATGAAATTATagg-------ttgaaaa
i caePb3.Scfld02_0      C 0 I 602
s caeJap4.Scaffold18213   571288 91 +   720316 ctggaaaa---tcatttattaTAGCGGACTGATAATTTTCTAGctcacttttaaaaaatgttgaatgtgaatctgaaagaaaaattc-----------tggagca
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-443.000000
s ce10.chrX              2756432 39 + 17718866 ----CGTATACCTAATAAATAGAACAACATTT---TTAACAATG--CT
s caeSp111.Scaffold582    298188 41 +   484378 -------GTTTTTACTGGATAGAACGCGGTTTAATTTGGAAATAAATT
i caeSp111.Scaffold582  I 9 C 0
s caeJap4.Scaffold18213   571379 45 +   720316 ggtagaaaatattaaaaaatggaGCAGTATTT-TTCTAAcaata--tt
i caeJap4.Scaffold18213 C 0 I 578
e caePb3.Scfld02_0       3439765 602 -  4147112 I
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=402.000000
s ce10.chrX              2756471 13 + 17718866 GGTAAA---CCAGAAT
s caeSp111.Scaffold582    298229 16 +   484378 GATCAAATTCCAGaat
i caeSp111.Scaffold582  C 0 I 249
e caePb3.Scfld02_0       3439765 602 -  4147112 I
e caeJap4.Scaffold18213   571424 578 +   720316 I
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=0.000000
s ce10.chrX              2756484 244 + 17718866 GTTTTTCAGATTTTCTGGTTTTTAGACAGATGTTTTAAATTTTGTATTTGTTCTAACAAAAATCAATTAATATAATTAATGTAAAGCCAATTAAAATACAAGCAAAGCAGCATTTTAAGGGATTTTCAATTTTTTTCTAAAAAAGCTTCAGAGGTGGAGTAAAGGTTTTGGCGGTTCAAAATTTTGAAAAAAAATGGAATAATTGTATCTCAAATCCTTATTTTTGGTCATCGTACCGTTTTTT
e caePb3.Scfld02_0       3439765 602 -  4147112 I
e caeJap4.Scaffold18213   571424 578 +   720316 I
e cb4.chrX              17504104 1161 - 21540570 I
e caeSp111.Scaffold582    298245 249 +   484378 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-1785.000000
s ce10.chrX              2756728 230 + 17718866 AATCAACTAAATAAATTTAAATAACTACTTAATTATGCAACTTTTTTTGGACAATTTTTTTTGGATATTAAGTATGATAGGCCATATTTTTTGATtgaaaaattttcgaaaagtgtttgaaaagtttcataaggaaattttgtaatttgagtctatacgtcccaaat---tgccggaaccgttactcctcattaaaaatttttttgtaataattttaatatttgaagaaaaaa
s caeSp111.Scaffold582    298494 165 +   484378 AATCAATGAGATA----CAATGAGCTGGGTAGTCATGTGATTTATCAC-------------------TCAAGACTGAT------------------GAAGAAT------AAGATGT----AGCGtttaatgaaaa----tggagaattgAGCCAGCGCA----GAATATGTGTCAGTGTGGATTTTCCCCTATACA----TTTTTGTTAGGATTTGACAGGtt-----aaatt
i caeSp111.Scaffold582  I 249 C 0
e caePb3.Scfld02_0       3439765 602 -  4147112 I
e caeJap4.Scaffold18213   571424 578 +   720316 I
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-2233.000000
s ce10.chrX              2756958 62 + 17718866 ttatttt-GCAAAGTACAGGCAATGAC---TTTAAAATTTTTCAGATTGTTCAAT-----ATAGTTGTTT---T
s caeSp111.Scaffold582    298659 62 +   484378 ttgttttagCAA---TTGTTCAGTGTCAACTATTATACATT----ATTTCATAAACTA--ATTTCCGTTT---T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3440367 61 -  4147112 TTGTTCT-GCAC---GCACGCATTGTT-----TAAGATGTT----ATTGCTCAAATTACGATGTTGGGGTAAAT
i caePb3.Scfld02_0      I 602 C 0
e caeJap4.Scaffold18213   571424 578 +   720316 I
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=992.000000
s ce10.chrX              2757020 14 + 17718866 AACtaattatttaa
s caeSp111.Scaffold582    298721 14 +   484378 AGCCAAGTTACTAA
i caeSp111.Scaffold582  C 0 I 70
s caePb3.Scfld02_0       3440428 14 -  4147112 AAcctatttttcta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   572002 14 +   720316 AATTTGCTATGTAA
i caeJap4.Scaffold18213 I 578 C 0
e cb4.chrX              17504104 1161 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=10.000000
s ce10.chrX              2757034 4 + 17718866 ataa
s caePb3.Scfld02_0       3440442 4 -  4147112 ttga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   572016 4 +   720316 AGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17504104 1161 - 21540570 I
e caeSp111.Scaffold582    298735 70 +   484378 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=18453.000000
s ce10.chrX              2757038 67 + 17718866 ---aattgaaaataaa----aCGGTACCATTTGAATTATCATCCCTGCTTGATCGTTTTGACTTTGGAGGTTCT
s cb4.chrX              17505265 67 - 21540570 ---AATAAAAAACAGA----TACTCACCATTCGAATTGTCATCTCGACTGGATCGTTTCGATTTTGTTggctct
i cb4.chrX              I 1161 C 0
s caePb3.Scfld02_0       3440446 66 -  4147112 ----aaaaaaaattaa----aactcacTATTTGAATTGTCATCCCGGCTTGGTCGCTTCGATTTGGTTGGTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   572020 74 +   720316 AATAAGTTGAAATTAACGTGAACTCACCATTTGTATTGTCATCTCGGCTCGATCGCTTTGATTTTGGAGGCTCT
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    298735 70 +   484378 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=3296.000000
s ce10.chrX              2757105 5 + 17718866 GAAAA
s cb4.chrX              17505332 5 - 21540570 gaaaa
i cb4.chrX              C 0 I 1980
s caeSp111.Scaffold582    298805 5 +   484378 GAAAA
i caeSp111.Scaffold582  I 70 C 0
s caePb3.Scfld02_0       3440512 5 -  4147112 GCAAA
i caePb3.Scfld02_0      C 0 I 505
s caeJap4.Scaffold18213   572094 5 +   720316 AAAAA
i caeJap4.Scaffold18213 C 0 I 768
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-611.000000
s ce10.chrX              2757110 62 + 17718866 CATTTATAGTTCGGCAATGTTCAAATGTTTCTGGTTTGTGCAGTAATCCTGATAACTAACTC
s caeSp111.Scaffold582    298810 48 +   484378 ACCTTCTCTTTCG----TATTAAAatgttca----------aataaaaattataccATTATC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3440517 505 -  4147112 I
e caeJap4.Scaffold18213   572099 768 +   720316 I
e cb4.chrX              17505337 1980 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=-2039.000000
s ce10.chrX              2757172 61 + 17718866 -------CAAATTTGAATTAGAATTCTCATGattttaaat----ataaatttattgttttttaaaaaCCAGT
s caeSp111.Scaffold582    298858 48 +   484378 GAAACTACA-ATTTGAAATAA----CT--TAATCT--GAT--CAACAAAATTCTTAATG-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3441022 63 -  4147112 -------CATGTTCGAAATGAGATTCT--TGACATTAGATGGGAACacaattgttcttttttcatttcctcc
i caePb3.Scfld02_0      I 505 C 0
e caeJap4.Scaffold18213   572099 768 +   720316 I
e cb4.chrX              17505337 1980 - 21540570 I
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=136.000000
s ce10.chrX              2757233 2 + 17718866 AA
s caePb3.Scfld02_0       3441085 2 -  4147112 cA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   572867 2 +   720316 AA
i caeJap4.Scaffold18213 I 768 C 0
e cb4.chrX              17505337 1980 - 21540570 I
e caeSp111.Scaffold582    298906 0 +   484378 C
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=1347.000000
s ce10.chrX              2757235 7 + 17718866 AGTAACA---
s cb4.chrX              17507317 7 - 21540570 AGTATCA---
i cb4.chrX              I 1980 C 0
s caeSp111.Scaffold582    298906 7 +   484378 AACAACA---
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3441092 7 -  4147112 AATAACA---
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold18213   572869 7 +   720316 ---AACAAAC
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   272962 1301 -  1794024 I

a score=157439.000000
s ce10.chrX              2757242 264 + 17718866 A--CACCAACTTT---TAGAGCCCACCGACGAAGAAGTTGACGAATGCGTAATTGAAAAACTA---------GAGAAATTTCGGTTTAACTGTATGGATTGTCTTGGTCTTGGTGGTCGGATCATAG----TAAGAAATCAA---TAAATTTGAGACATCGCGCGCCGAATGAT-----GAA--TGTG------------------------------------------AA---GCGAC--GCCT---TCAATTGT-TTGTCACCAATTGAAACCAATATGAAGCCTGTTGACAT-----TTTGCTCAAGAATTCTT--CACCGAGACCAATTGAGAACACAATAAGGC
s cb4.chrX              17507324 255 - 21540570 ---AACTAACTTT---TCGATcctagagaagaagaagtcgacGAGTGAGTAATAGAAAAACTA---------GACAAGTTACGGTTCAACTGAATTGAAGTTCTTGGTCTAGGCGGTCGTATCATAG------------------------TAAGACAT--TATAGTGGATGAT-----GTAATTGCA------------------------------------------GAAAAGAAACGTGCAT---TCAATTGC-TTGTTTTCAATTGAAACCAATATGAAGCTTGTTGACATTT--GTTTGCTCAAGAATTCTTCACACC-AAACCAATTGAGATTACAATGAGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   274263 268 -  1794024 A--CACGGACTTT---TTGATCCTAATGAAGACGATGTTGATGAATGAGTTATAGAAAAACTA---------GATGAATTTCTATTTAACTGAATCGAAGTTCTTGGTCTTGGTGGTCGTATCATAGCGAATAGACAAAATG---CAAGTTCAATACAT--CATGGTGGATGAT-----GTA--TTCA------------------------------------------AATAGAAAAC--GCAT---TCTATTgc-ttgttttcaattgaaaccaATATTAAGCCTGTTgacat-----ttttctcaagaattcTT--CACC-AAACCAATTGAGATCACAATGAAAC
i caeRem4.Crem_Contig15 I 1301 C 0
s caeSp111.Scaffold582    298914 271 +   484378 A--GCCTAACTCC---GTGATCCCGTTGAAGACGATGTTGAGGAGTGAGTAATTGAGAAACTA---------GACAAGTTTCGGTTTAATTGAATCGAAGTTCGCGGTCTTGGCGGTCGTATCATTG----TGAATAAGGCATTTCAAGTTCAAAACAT--CATGGTGGATGAT-----ATA--TTTG------------------------------------------AACCGAAGAC--GCAT---TCAATAGc-ttgttttcaattgaaaccaATATGAAGCCTGTTgacattctcttcttctcaagaaTTCTT--CACC--AACCAATTGAGATCACAATGGGAT
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3441100 272 -  4147112 AATATCTGACTTCTGGAAGATACCAATGAAGACGACGTTGATGAATGAGTAATTGAAAAACTA---------GACAAATTGCGATTCAACTGAATAGAAGCTCTTGGTCTTGGTGGCCGTATCATAT----TGAATAAAATGTCCCAAGTTCAAGACAT--TATGGTGAATGAT-----GTA--TTTG------------------------------------------GATGGGAAGC--GTTT---CCAATTgc-ttgttttcaaatgaaaccaaaaagagGCCTGTTGACATTA----CCTCTCAAGAATTCTT--CACC--AACCAATTGAGATCACAATAAGAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   572876 320 +   720316 A--TTCTCACTTC---TCGATCCAATAGAAGAGGAGGTTGATGAATTCGCAATAGAAAACCCCGAGGATGCTGATAAGTTTCGATTTAATTGTACCGAAGTTCGAGTTCTTGGTGGTCGAATCATGG----CAAGAAATTTAT--GTAGTTCA--CTAT--CATGATGGATAGTTAATGAAA--Tttgtaaaaagaaaaaagaaagaaaggaataacgaactaaagaactaaaacgaaac--GTATCCACCAATAgctttgttttcaattgaaacCAATATTGAGCCTGTTGACAT------TTTCTCAAGAATTCTT--CAAC---ACCAATTCAAATCACAATAAGAC
i caeJap4.Scaffold18213 C 0 I 906

a score=-207.000000
s ce10.chrX              2757506 7 + 17718866 GAGAGAG
s cb4.chrX              17507579 7 - 21540570 AATGGAG
i cb4.chrX              C 0 I 1136
s caeRem4.Crem_Contig15   274531 7 -  1794024 GAGGCAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299185 7 +   484378 GAAACCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3441372 7 -  4147112 GACACCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   573196 906 +   720316 I

a score=2485.000000
s ce10.chrX              2757513 6 + 17718866 CAATAA
s caeRem4.Crem_Contig15   274538 6 -  1794024 CAACAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299192 6 +   484378 CAATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3441379 6 -  4147112 CAACAA
i caePb3.Scfld02_0      C 0 I 869
e caeJap4.Scaffold18213   573196 906 +   720316 I
e cb4.chrX              17507586 1136 - 21540570 I

a score=-893.000000
s ce10.chrX              2757519 3 + 17718866 GAA-
s caeRem4.Crem_Contig15   274544 3 -  1794024 AAA-
i caeRem4.Crem_Contig15 C 0 I 800
s caeSp111.Scaffold582    299198 3 +   484378 -GGC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3441385 869 -  4147112 I
e caeJap4.Scaffold18213   573196 906 +   720316 I
e cb4.chrX              17507586 1136 - 21540570 I

a score=-445.000000
s ce10.chrX              2757522 70 + 17718866 GAGCCTTCACTTTTTTGTTGGAGTTTTTAAACGCTTAAGTTAAAGTCTTTTGGAATTAAAAATATATTAC
s caeSp111.Scaffold582    299201 48 +   484378 TA-------------------AGGCTTAGAAAACCTGAGTTTGCTCCatt---aatgaagaaaaaattgc
i caeSp111.Scaffold582  C 0 I 125
e caePb3.Scfld02_0       3441385 869 -  4147112 I
e caeJap4.Scaffold18213   573196 906 +   720316 I
e cb4.chrX              17507586 1136 - 21540570 I
e caeRem4.Crem_Contig15   274547 800 -  1794024 I

a score=0.000000
s ce10.chrX              2757592 198 + 17718866 CACTTTATAGTTATGTGATTATCattaatttttattaaaaaattCCAAGTATTTTTGAAATAAAAGTTTTCAAAAACACAATTTCAGAGCCGAGTCCGGGttttttaagttgtggaaatttatgtcaacatctacaatttttatttgacggtagtttggaaaatttccggccatctcTCACAActgaaaaatggctcc
e caePb3.Scfld02_0       3441385 869 -  4147112 I
e caeJap4.Scaffold18213   573196 906 +   720316 I
e cb4.chrX              17507586 1136 - 21540570 I
e caeSp111.Scaffold582    299249 125 +   484378 I
e caeRem4.Crem_Contig15   274547 800 -  1794024 I

a score=-51.000000
s ce10.chrX              2757790 28 + 17718866 gatctaggtttcttgaggtgctcaaaaa
s caeSp111.Scaffold582    299374 14 +   484378 gatcgagttttttt--------------
i caeSp111.Scaffold582  I 125 C 0
e caePb3.Scfld02_0       3441385 869 -  4147112 I
e caeJap4.Scaffold18213   573196 906 +   720316 I
e cb4.chrX              17507586 1136 - 21540570 I
e caeRem4.Crem_Contig15   274547 800 -  1794024 I

a score=-5222.000000
s ce10.chrX              2757818  98 + 17718866 tttgtaaaact-attgtcaaatgaaagatcatacatcacagtaaaaacaaaa----ctttccacaacctcataaa--aatcgatatgcaCCTTAAACAAAAATCA
s caeSp111.Scaffold582    299388  16 +   484378 -----------------------------------------------------------ttcacattatCAGAGA------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   574102 100 +   720316 TTTTTAAAACTGATTGTTAGATAAAAACGTA-----AACggtaaaagaaaaattgccTTTAAATAATCTGAAGGAACAATGGCCAAGAAACTAACAAGGAAATTA
i caeJap4.Scaffold18213 I 906 C 0
e caePb3.Scfld02_0       3441385 869 -  4147112 I
e cb4.chrX              17507586 1136 - 21540570 I
e caeRem4.Crem_Contig15   274547 800 -  1794024 I

a score=-547.000000
s ce10.chrX              2757916 2 + 17718866 CT-
s caePb3.Scfld02_0       3442254 2 -  4147112 CT-
i caePb3.Scfld02_0      I 869 C 0
s caeJap4.Scaffold18213   574202 2 +   720316 -TG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17507586 1136 - 21540570 I
e caeSp111.Scaffold582    299404 0 +   484378 C
e caeRem4.Crem_Contig15   274547 800 -  1794024 I

a score=-4943.000000
s ce10.chrX              2757918 10 + 17718866 TAAAT-------------------------TGATA
s caeRem4.Crem_Contig15   275347 10 -  1794024 taaat-------------------------tatca
i caeRem4.Crem_Contig15 I 800 I 2
s caeSp111.Scaffold582    299404  3 +   484378 ------------------------------TGA--
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3442256 10 -  4147112 TAGAT-------------------------TGAAC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   574204 33 +   720316 TATATAATACTCCTGTGCTTTCAAAACGCCTAA--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17507586 1136 - 21540570 I

a score=139831.000000
s ce10.chrX              2757928 225 + 17718866 AACTTACGGTGCACATGAGCTGATGACGATCG---CTTTTTGACTGCTATCGGCGCCATAGATTGGCGCCGCCTGGCAAAAGCCCTGCCCACCATTTACTACTTTTTTCTTCCCATTTGGGCCGTGTCTGAC-AATTAAGC---AAAAATCATTGAGAAAC----------TA--AAACGAGAAGCAAACGAATAAATATTTTC--GTACTGGCAAA--AAAAATGTTTAGAT----TTCTAAAAAAAAAAT
s cb4.chrX              17508722 242 - 21540570 AACTTACGATTCGCATGTGCCGATGATGATCG---CTTTTTAACCACTATCGGCGCCATTGATTGGCGCCGCCTGGCGAAAGCCCTGCCCACCATCTACTATTTTACTCTTCCCATTTGGGCGCTGCCTGGTaaattaaac---aaaaacagTGAGATGGTGAGAAATGCGGGGTAGAAATGACGGA-GCAATAAAATATGATTGAGAACAGAGGAG-GCAATTTGTTTAGATTCTATTCaagaaatttt--
i cb4.chrX              I 1136 C 0
s caeRem4.Crem_Contig15   275359 230 -  1794024 aacttaCGGTGAACATTTGCAGATGATGATCG---CTTTTTAACAGCTATCGGCGCCATGGATTGGCGCCGCCTGGCAAAAGCCCTGCCCACCATTTACTACTTTACTCTTCCCATTTGGGCCGTGTCTGAcaaattaaac---aaaaacagTAAAGCGAT----------CgatagaaaaagtgaaggCGAATGAATATAATT--GAACAGGAGCA-TAGAAATGTttagatt---ttcgagaaattcgaa
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    299408 226 +   484378 AACTTACGGTACACGTGAGCCGATGAAGATCG---CTTTTTTCCGGCTACCGGCGCCATAGATTGGCGCCGCCTGGCAAAAGCCCTGCCCACCATTTACTACTATATTCTTCCCATTTGGGCCGTGTCTGCCAAATTAAAC---AACAATAGttgagagaa----------gg--aaaaatattgaagacGAATGAATATTATT--GAACAGAAAATCATAAATTGTTTAGAA----Ttagagatgagaa--
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3442267 228 -  4147112 AACTTACGGTAAGCATGTGCAGATGATGATCG---CTTTTTAACGGCTACCGGCGCCATAGATTGGCGCCGCCTGGCAAAAGCCCTGCCCACCATCTACTACTTTATTCTTCCCATTTGGGCCGTGTCTGGcaaattaaac---aaaaatagttgagaaag----------tgttgaaaatattgagaaggAGTGAATATTATT--GAACaggaaat--gaaattgtttAGAA----TTCAAAGGAAGAGAC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213   574237 209 +   720316 AACTTACGGTTTTGATGTGCGAATGACGTCCGTTTCTTGTTAACGGATACCGGCGCCAAAGATTGACGCCGTCTGGCAAACGCCCGGCCCACCATTTACTACTTTATCCGTCCCATTTGGGTCA-GTCTGCC-aattaatttcaaaacaaCGTTTTGCGag--------------aaaagaattaa--------------------gaaatgaagat---gaaatgtttaaaa----tttgaaatgaaaagt
i caeJap4.Scaffold18213 C 0 I 277

a score=-23768.000000
s ce10.chrX              2758153  94 + 17718866 TATTCTCAAATTGTTCAGGGTTGGGAAATGAAAAACAAATGAGGAATTATAAACAATTA---------GAAAA---------ATGACGAATT---------------AATTGCAA------GGAAC-----TAGGACG-------------------------------------
s cb4.chrX              17508964 113 - 21540570 -----------------------------------------ctgaagaatAAACATTTATATTGAAGTGAGAATGTGCTGGAATGtgggattttgagaattcagaa-gCTCTCAA------TGAGCAGACAAAGGATAAAT--------GACTATAG------GACAgtatgatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   275589  97 -  1794024 -----------------------------------------atgaaGTATAAACAATTA--------GGAGAA------GCAATAAGAAAT-----------AGAA-CATTTTGT------TGAGC-----AAGAATTATTTTGTTCTgaactacaatttttttgtggtaAGAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299634  42 +   484378 ------------------------------------------aaaaagataaacatTTA---------GATga----------------att----------cgag-tttttcaa------tgaat-------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3442495  68 -  4147112 -----------------------------------------CAGAAGGATAAACATTT----------GATGA---------CTGGAAGATt----------tgagagttttcaaatttattgaat-gatTCGGGGTCA------------------------------------
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold18213   574446 277 +   720316 I

a score=-9330.000000
s ce10.chrX              2758247 47 + 17718866 ---------------------------------AAAATGTCTAAACCTTTATACTGGAATAGCTAAGTAACATAATACAT
s cb4.chrX              17509077 16 - 21540570 ------------------------------ttaaaaaagtctgGGA----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   275686 29 -  1794024 ------------------------------TAAATAAAGAATGAAAA----------GGTGACGATG-----------AT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299676 62 +   484378 gctctcagaacttttttttctccacagctacaaaaataaacagaaacCTT-------GACGACAATG-----------AT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3442563 50 -  4147112 I
e caeJap4.Scaffold18213   574446 277 +   720316 I

a score=869.000000
s ce10.chrX              2758294 7 + 17718866 AATGTTT
s cb4.chrX              17509093 6 - 21540570 AAAACT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   275715 7 -  1794024 AAAACTC
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    299738 7 +   484378 aatgttc
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold18213   574723 7 +   720316 AACGTTT
i caeJap4.Scaffold18213 I 277 C 0
e caePb3.Scfld02_0       3442563 50 -  4147112 I

a score=48030.000000
s ce10.chrX              2758301 92 + 17718866 AAAAAAATTCAATAGTTGATAG----AAC---TTGA-TTCATTTCTAT----CCAAAAGTGCTGGCGGCTCATTTCATCGGAAAACGGAAATTGGCTGTGACAC
s cb4.chrX              17509099 80 - 21540570 ------ACTCAAT-----ATAACTAGAAC---TTGC-TTT-TTTCTCTACTCCCGAAAGTGCCCG--------TCTCTGGCTAAACGGAAATTGGCTGTGACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   275724 82 -  1794024 AAAAGAACTCAAT-----ATAA----AAG---TTAC-TTC-TTTCTCT----CCGAAAGTGCCCACA---CATTCCatgga-aaacggaaattggCTGTGACAC
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    299749 86 +   484378 aaaaaaactcgat-----ATAG----Aac---ttgc-ttt-tttctct----ttcaaagtGCCTACGCCTCATTCCatagaaaaacggaaattggCTGTGACAC
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3442613 81 -  4147112 aaaaaaacccgat-----atag----aac---ttgctttt-tttctct----ttcaaagtGCCTACGCTTCATGCC------AAACGGAAATTGGCTGTGACAC
i caePb3.Scfld02_0      I 50 C 0
s caeJap4.Scaffold18213   574730 78 +   720316 GAAATAACTCAAT-----ATAA----AACAAGTCCC-TTC-TTTCCCTA---TTCAAAGTGCCTG------GTGCT------AAACGGAAATTGGCTGTGACAC
i caeJap4.Scaffold18213 C 0 I 175

a score=-13996.000000
s ce10.chrX              2758393 69 + 17718866 AT------G-GCGGT-------GTAGATAGCAAGTGCAGAAAG------GGTTTCAGCAGTTGCTGCTCAGAATTTTCA-AG----GTAAATAC--
s cb4.chrX              17509179 79 - 21540570 CC--CCTTA---------ACCATCCGGTTTCTAGTGCAAAACGTGTTTGGATC--AGCAACTTTTGTTTCAAAAGTATTGAA----TCATAGATAT
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig15   275806 71 -  1794024 CCTACCCTG-CCGGTGATATTAGCAAGTTTctatttcgaaatg------------------ttttgttcaaaaatgatt--a----cGAAAAACAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299835 80 +   484378 CCCTACCCG-------------GCTGATGGTGAAAGCAAAACGTTTTCGAGTTG-AActactctttttctcaaaattct-aaaaGTTCTGGAATC-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3442694 83 -  4147112 CCCTACCCGTCCGGT-------GTTGATGGTGAGTGCAAAGCGTTTTTGAGTTGCGATtactctttttcgaaaatatca-aa----tcaGAAATC-
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18213   574808 175 +   720316 I

a score=-3046.000000
s ce10.chrX              2758462 38 + 17718866 TATAATAGCAGTC--AGAAAAAAAACACGCCG--CACACTAC-----------
s caeRem4.Crem_Contig15   275877 48 -  1794024 --AGATATCATtc-cgaaaatgagaaaatcat--tTGAAGACAGAAATAGGAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299915 41 +   484378 AGCACTATCAGttgtgaaaaacaaaaaagcag----gaagaaagg--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3442780 45 -  4147112 AATGACAtaagtcaaaaaaaatagagagacaGAACAGAAGACAAG--------
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18213   574808 175 +   720316 I
e cb4.chrX              17509258 32 - 21540570 I

a score=-13607.000000
s ce10.chrX              2758500 62 + 17718866 ---------------------------CGTGTAGAGGA-----AAATTGACAGACAGCACAAAAAGTAGATTTTCGAAA--GTTTTCTCGCGTCCC
s cb4.chrX              17509290 66 - 21540570 catgaaaaccaaaattaacttca----agaa-aaagga-----gaaaggaTGGACAA---GGGATGTCAACAC--------GGATT---------C
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig15   275925 61 -  1794024 ----GAAGTTGGGAACAATTTCATAGTAGGA-CAAGGA-----ACAAGGA------------GATGTCAACACTAAA----GTATT---------C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    299956 57 +   484378 ---------------------------agagaaaaggaatggTGGAACAATAGATGG---AGGATGTCAACACCGAAAGTTTTCTT---------C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3442825 53 -  4147112 ---------------------------AGAG-taagaatttttggaagactGGATAG----GAATTtcgcttctcaaaa--aaatt---------t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   574808 175 +   720316 I

a score=21753.000000
s ce10.chrX              2758562 45 + 17718866 GCAAATGATTGCTAGGCATGCAACCTT------------TAGATTTC-----------------ACGAAATGCT
s cb4.chrX              17509356 50 - 21540570 GCAAATGATGGTCAAACATGCAACCTT------------GGATTCTTGTTTG------------GAATAATTTC
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   275986 62 -  1794024 GCAAATGATGGTCAAGCATGCAACCTT------------GGAATTTTGTAAGATTCTTTATAAAGAGAAGTATA
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    300013 57 +   484378 GCAAATGATGGTCAAGCATGCAACCTTTGGTTTCACACAAAAGTTTT-----------------Atgaagtttt
i caeSp111.Scaffold582  C 0 I 53
s caePb3.Scfld02_0       3442878 45 -  4147112 gcaaatgaTGGTCAGGCATGCAACCtt------------agattttt-----------------tcgaaatttt
i caePb3.Scfld02_0      C 0 I 67
s caeJap4.Scaffold18213   574983 35 +   720316 GCAAATGATTGTGAGGCATGCAACCTT------------TTTATTCC---------------------------
i caeJap4.Scaffold18213 I 175 C 0

a score=2650.000000
s ce10.chrX              2758607 11 + 17718866 GGTCAATTTTT
s cb4.chrX              17509412 11 - 21540570 gtttcattttt
i cb4.chrX              I 6 I 5
s caeRem4.Crem_Contig15   276054 11 -  1794024 GTACATCTTTT
i caeRem4.Crem_Contig15 I 6 I 5
s caeSp111.Scaffold582    300123 11 +   484378 AATTAACTTTT
i caeSp111.Scaffold582  I 53 I 24
s caeJap4.Scaffold18213   575018  8 +   720316 ---TAGTTTTC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3442923 67 -  4147112 I

a score=-11533.000000
s ce10.chrX              2758618 25 + 17718866 TTTGT--TGTTTTGTT--------------------------TGTTAGAA-------------------TTT
s cb4.chrX              17509428 25 - 21540570 ttttc--aaatttgtt--------------------------ctTAAAAA-------------------GTG
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15   276070 46 -  1794024 TTAACGAAGATTTCCC--------------------------ATTGGAAATAACATAAGTTTCGTTAGCAAT
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    300158 51 +   484378 ttttc--taagttttcagcattattttttgaaaaaaaatattaataaaag-------------------att
i caeSp111.Scaffold582  I 24 C 0
s caePb3.Scfld02_0       3442990 25 -  4147112 CCTTC--TGCGTTTTC--------------------------GATAACAA-------------------ATT
i caePb3.Scfld02_0      I 67 C 0
s caeJap4.Scaffold18213   575026 25 +   720316 TTAAT--TGTCTCATC--------------------------GATTTATA-------------------TTT
i caeJap4.Scaffold18213 C 0 I 812

a score=-30315.000000
s ce10.chrX              2758643  76 + 17718866 TTTAGTGATGAAATTCTAAC--------------------------------------------AAAAAATTCTAACA-----AAAA-------------------------GATGTAT---------------GCCttataatttaaaa---------------------ttctttttgtcaaaa------------
s cb4.chrX              17509453 117 - 21540570 TTCAGTTGCTA---TACAGa------------------atccaataaaaaaaactaactccct-attgttttttgataaccgcaaaa-------------------------aatttat-----------taacgCCTT--------GAA---TTCTCCTGTTccctctaattttttctttcgaaa------------
i cb4.chrX              C 0 I 187
s caeRem4.Crem_Contig15   276116 157 -  1794024 TTAAGTAACCA---TCTAGA------------------GGATGACTTAATTAGTTAAcaaattcactattttccaattttcgcaAAACAAACTAACCAGTAATAACAATGCGGATTTGTGCAGCTCGCGGGAATACCTCT----ACAGAAGTTTtcatctgttttct----tttttgtcttcaaaa------------
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    300209 157 +   484378 ttctgattcca---CTTGAGCTAAAGCCACACTatcatagaaaaattggagaagCGACTGCC--AAAAACTGTAAGTGGTGCCTAGA-------------------------GACTtatcttattttcaataacaACTGA----TTAGTT---CCCTTttatctaat----tttttgttttgcaaaACAAACTCACTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443015 107 -  4147112 ATGAGACCCGA---CCTGAG--------------------------------------------AAAACCCTGAAATGGTACCTAGG-------------------------GATTTATTCCACGCACGATAACACCTTA----TTAACG---C------ACCCGCC----ttgt--tttcggaaaacaaacTAACCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I

a score=779.000000
s ce10.chrX              2758719 3 + 17718866 tta
s caeRem4.Crem_Contig15   276275 3 -  1794024 ata
i caeRem4.Crem_Contig15 I 2 I 63
s caeSp111.Scaffold582    300366 3 +   484378 Gta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443122 3 -  4147112 GTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17509570 187 - 21540570 I

a score=1349.000000
s ce10.chrX              2758722 35 + 17718866 attttaattgttttataaCCTATACTTGGAA------TTAT
s caeSp111.Scaffold582    300369 41 +   484378 ataataattttgatatttggTGCTCTTGGGAATCGCTGTAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443125 41 -  4147112 ATAACAATTCGAATATTTGATGCATTCGGGAATACCTCTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17509570 187 - 21540570 I
e caeRem4.Crem_Contig15   276278 63 -  1794024 I

a score=-18099.000000
s ce10.chrX              2758757  75 + 17718866 ---------------------------------------------------------------AAAA-----------GTTCAAAAA----AAATCTCTATAATATTTTATGGAACATTTT-------------GAAACAATGCAGAGTTTTTTAGAGTTTTTAAT----------
s caeRem4.Crem_Contig15   276341  88 -  1794024 ---------------------------ATAAGTTTTGC--------------CGAAACCCCATAAAA-----------CCCTAAAAAACTCAGATT-----------TGACACACTCTTTC------ACACTACCAAAGCTTT------TTTGCACCGTTAAT-------------
i caeRem4.Crem_Contig15 I 63 I 88
s caeSp111.Scaffold582    300410 154 +   484378 AGAACGTCTCATAAAATAACTTCTCGCTTATTTTTCGGACTTCATTTGAATGAGAGAACT------------------GCTCAGACAACCGAAGTTTTGAGAACAGGTGATAAGTCATTAT----GGATACCCGCAAAATTTAGGAAAACCTCTATATTTCATTATGCTCTCTagt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443166 157 -  4147112 AG---------------AAGTGTTCATATAAATTTATG--TCCAATAGGAAGAAAATACCCAGAAAGGAGAACAAGTAACCTAGACAATTTACGTTTGTGAGACAGGTGATAAGTTTCTTTCCTCGGATACT--CAAAAACTGACGAAATCTCCACAAGTTTTAATACTCTCTCgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17509570 187 - 21540570 I

a score=-87.000000
s ce10.chrX              2758832 33 + 17718866 TAAACTTT-----TTGTTAAAA----ATCGTTTC----TCGGGACT
s caeSp111.Scaffold582    300564 43 +   484378 ttcctcttttttatttttgcacC---ACTGTGTCAAAATCAGAACA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443323 45 -  4147112 tttattttagtt-tttttgcacCGTTAATGTGTCAAAACCAGAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17509570 187 - 21540570 I
e caeRem4.Crem_Contig15   276429 88 -  1794024 I

a score=-14788.000000
s ce10.chrX              2758865  34 + 17718866 -----------------------------------------AACTATAAGA-----------AATGTCATT-CAGATCATTT--CACTT------------------------
s cb4.chrX              17509757  48 - 21540570 -----------------------------------------aacttcgaaaaaaagaggtcGGCTCTCACT-CACACCtctatcaacttt-----------------------
i cb4.chrX              I 187 I 2
s caeSp111.Scaffold582    300607 100 +   484378 TTTGACAGGTGAGAATgaattttctcagttttctttctgcGGATTCTGAAC--------TAGTTTGTTATTCTGAACATCTT--AAatggaaa---caagaaaaaagagtctt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443368  71 -  4147112 TACAGCAGG---------------TGAgatt---------aaattttttgc--------tcgGGTATCGTT-TAGATAtcta--aaaatgagaagttgaggagaaa-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e caeRem4.Crem_Contig15   276429  88 -  1794024 I

a score=-13106.000000
s ce10.chrX              2758899 40 + 17718866 TTTTA-AAAAACAATATCACAAGTAAATTC--AA---------ACATTAAAA------
s cb4.chrX              17509807 39 - 21540570 ttttg--------agccggtcttttaatca--aa---------atctgagaaataaGG
i cb4.chrX              I 2 I 10
s caeRem4.Crem_Contig15   276517 48 -  1794024 TTTTA--------ACCTCACGACTCTATCC--AAAATAATGGTATTTCAGAATTAAAA
i caeRem4.Crem_Contig15 I 88 I 38
s caeSp111.Scaffold582    300707 45 +   484378 --ttgaaaaaaataggtaGCAATTTGTTAA--AA------GTTCATTCATGAGAA---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443439 46 -  4147112 ---tggaaaaatcaacCTTTGATTGGGTAAGGGA------GATATCTGGATAGAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I

a score=-3267.000000
s ce10.chrX              2758939 25 + 17718866 -----------CTTGAAA--------------------CGTTTAAATTTTTGCTAC
s cb4.chrX              17509856 18 - 21540570 -----------tttggaa-----------------------aaaaaaattat----
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold582    300752 56 +   484378 CTCCAAACTCATTCGGAAGATGAGATTTTACGTAGAAACAGGAAAAGATGAACAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443485 34 -  4147112 CTT--------TTTGGAa--------------tcgaaacaggaaaagttgAACAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e caeRem4.Crem_Contig15   276565 38 -  1794024 I

a score=84664.000000
s ce10.chrX              2758964 304 + 17718866 GTATGGTGTA-TAGAGTAAGGGCACCTATGTCAAATGCAGATAAAAGATT-----CAAAACTTGTGTAGAAAAAGAA----GGCA----AGCAATGGAATGAAGTGT----AGATGAGTAGAAGAC-ATTTATG-----AAGAGGCATGGAGCATCTTCTTCTCCTATCAAATTACATAGACATTATTAGTAGTAGACT-ATGGGTTTTG-------------ACGAATAAAACAAAATTTTGGATGTTTCTGTTTT-TGTGACTTCT-------CT---------GTCTCTATGTCATTAATAGCTC-ATTTTATTCATGTTCGAGGTGGTCATGGTTGCACAGGAACGGCCG--AAAAGC
s cb4.chrX              17509874 326 - 21540570 gtataAAACATT-GGATTTGAACAGCGGTGTCAGATgca--gagaaaattggaaaaaaaagttgaatagaaaaaaga----gaagacaaggaaaagaaatgaagTGTGGACGGATGAGTAGGAGGCAAAATAGGGGGGAAAGA-GTATGAAGCATTTTCTTCTCCTATCGAATTACATCGACT----TATTAGTAGACTCCCGGGtttttttCCCGCCTCTTCCTGGATGCGGAAGAGTTC----TTCTCCCGTAGcgtagtgttttt-------tttttcgcagcGGTCCCATGTTATTAATAGTGTATTT---------TGCGAGGTGACCATGACAGCA-AATTGCGTCG---AAAAGC
i cb4.chrX              C 0 I 1861
s caeRem4.Crem_Contig15   276603 296 -  1794024 GTATGAAACA-T-GGACAAGAACATTGTTGTCAGATGCA--GAgtggatt-gaaaaaaaacttgaaaagagaaaaga----gaga--aaagcaaaggaataaagTGT----GGATGAGTAGGAGAC-AAATATG-----AAGA-ATATGGAGCATTTTCTTCTCCTATCGGATTACATCTACA----TATTAGTAGACT-CCGAGTTTT--------------AAGAATAAAGAAGAGTTC----TGCTCttgtttc-tatttcttct-------ttttccatg--aGGTCCATGTTATTAATAGTGT-CTT---------CACGAGGTGTCCATGGCAGCA-AATTGCGTCGGAAGAAAGC
i caeRem4.Crem_Contig15 I 38 C 0
s caeSp111.Scaffold582    300808 292 +   484378 ATGTAAAACA-T-GGACAAGAACAGCCCTGTCAAATGCAGGGGGAggatt----gaaaaagttgaaaagaaaagaaa----gaag----agcatCGGAATAAAGTGA----AGATGAGTAGAAGAC-AACTATG-----AAGA-GTATGGATGA--------GCCTATCGAATTACATCTACA----TATTAGTAGACT-CTGGATTTTTGCAAT--------AAAAACAATGTAAAGTTC----TGCT---GTTTC-tattgcttctttttctctttttg-----agcTCTATGTTATTAATAGTGT-CTT-------TGTTCGAGGTGGTCATGGTAGCA-AATTGCGTCGG--AAAAGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3443519 278 -  4147112 ATGTAAAACA-TCGGCTGAGAACAGCCTTGTCAATTGCA-GTGAAggatt----gaaaaacttgaaaagaagagaaaagatgaag----agcATCGGAATGAAGTGA----GGATGACTAGAAGAC-------------AAGA-GTATGAAGGA--------GCCTATCGAATTACATCTACA----TATTAGTAGACA-CTGGATTTTTGCAAT---------AAAACAGC---AAGTTC----TGTT---GTTTC-TATTGCCCCT-------TTTTTG-----AGCTCCTCGCTTTTAATAGTGC-TTT---------TTCGAGGTGGCCATGGTAGCA-AATTGCGTCCGAAAAAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I

a score=-12261.000000
s ce10.chrX              2759268 134 + 17718866 TAGAAAAAATGTTTTTATTTGTCAGTGCTACTTTTTTA------------AAATCAGGTCCTAGTCTTATGGCCAACACGACCAGAT-----------------agctcatttttttcaaaaatttggcaatt--------tgc-caaaactttgactg--aaaaatttaaaaa-
s caeRem4.Crem_Contig15   276899 122 -  1794024 -GGGATTAGTTCTGCTGCTGCTTCTAGCTACATTTTTTCTGACAGAACTAAACCCAT-----------------------------------------------TGGTGTATATATCTAAAAATTC----ATATCTTCTAATGT-TATGACTTGTTTTTCTGGCAACTCAAACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    301100 140 +   484378 -GGGATTAGCTCCG-----------CGctacatttttt----catatctaAACCTCTGttgcaattttttgg-------aatcagatCATTTCGGAGTTTTTGATGatatctattttcaaaaattgttagaTGTC------TGT-TAGAACTTATAcgt----aaaactgaaaa-
i caeSp111.Scaffold582  C 0 I 194
s caePb3.Scfld02_0       3443797  69 -  4147112 -GGGATTAGCTC-------------ggctacatttttt-----------------------------------------------------------------------tttgttttcaa----------atctc------tatatagaatttttgatc----tgGATCATAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17510200 1861 - 21540570 I

a score=-14159.000000
s ce10.chrX              2759402 318 + 17718866 -----------aacctaaaaattttagaGTATTTCATAACACTTTTTTGCGTCAACCAGCATTCATAAAAATCACCTGCCAACTGAAATATTATAACTAATTCAAATTAGTGGTTTGTAGAAATCTTTTATGTTTTAAAATTTAGACCCCAACCTTG-AAAGTTTGCAACAAT------AAAAAACATCAAGAAATAAG-----TTTCCTGAAATCTGACAAAAAATAC-----ATATG--CTTGC-----------ATTTGTAATGCATTTTGAACT-TCATAAATTTTGAAGTTTTCTGTTTTGACGACAACATCAA------ATGCAATTTTTACCCTTTGAATTTTAAGAGTAAAAGTACA-T
s caeRem4.Crem_Contig15   277021 315 -  1794024 CTATTGGAATGATTGTAG------TAATGAAAGTCGTCacattgtttt-----------tatttataaaa--------cCAAAGTATACGTCAAAACTGGCT--ATTTACtatcttacaag------ggaagtttT----TGGAGACGGCACTTTTAAACGACCTATAAGTTTgattataggtattttcgaccacggggagtcaatttttgcagt----cgaaacctgctaaatgtatctgcgagccgagttatgagatctcaaa--catttcaaattgttaagctttttcacgtgg--aattccaaatcgataAGTAGTAtac-acaaaatattt-----tcatatttgcaACGTACAAGCACAG-
i caeRem4.Crem_Contig15 C 0 I 84
s caePb3.Scfld02_0       3443866 249 -  4147112 -----------AACTCAG------TTGCAGAAGACATTTCAC-------------------TTTAAAAAA--------C----GGTtcgatcaaaa------------aatatcattcaaGAATGCAGAATGTT---------AGAATATACTC----ACTAATTATCACAATCGTCTCAGAAAACTTC--TCATggtg-----gtttcaaaaat----caaaaaccac-----aTATTT-CGtgc-----------atttgaaa--tttttcgaatt-tcataaattttaaaGTTT--GGGTCAGAAGACATTGGTAACCTTCTACATAATACTT----------TTGGTGAAGTAAAAGTACA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17510200 1861 - 21540570 I
e caeSp111.Scaffold582    301240 194 +   484378 I

a score=-798.000000
s ce10.chrX              2759720 58 + 17718866 CATTCACCAGAATGATATGAGTATGTTGAGCTGTTTCATTTGCTTTTATTGTAGAATT
s caePb3.Scfld02_0       3444115 32 -  4147112 ----------AATGTT----GGATTTCGAG--ATTTCGATCGTTATca----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17510200 1861 - 21540570 I
e caeSp111.Scaffold582    301240 194 +   484378 I
e caeRem4.Crem_Contig15   277336 84 -  1794024 I

a score=-22453.000000
s ce10.chrX              2759778 368 + 17718866 ATGAAATGATTAAAGGTTGAAGGCTTTGCTttaaaggtgaagtagcg-------------ccagtgggggacttgtgaaaaaccacttctatggtctcaaaa------------------cgacAATgaattttcatttcttttattgcatatatgaaccgtttattattattttgttgattaaa------------------gtacatgtacatgaagccgacaagtgaAATTACCCCgtaatttttttcgaaattttgagccgccataaaaacattttgagaaatttctgacaaggttgactacaaaagttgttcatgcacatttgagcacatttAAGCACT---------------TTTTG------GGATATTTGCTTATTTTTGTTTCATATAAGTATTTTTTATAACAAT-----------TTC--------------CCCTATAACACCATGCCGT-------
s caeRem4.Crem_Contig15   277420 447 -  1794024 atgaaaagtttgagagctaataattcggctcgcagagacatttagcagggcTTGACAGCAGAAATGGACTCttcgtggtcgaaaatacctataaatTTAGAGGTTGTTTGAAAGTgacgtctccaaagacttctcTTGTTAGTAGTTTTATCTGTgaa------aatactaattttttgattaaaagcTGAAGTTTGTAAAAGGAAGGTACTTAAGTAGCCAGCAGTTTGtataatcagaaaattttttttaaaaacataaaactcT-CAGGGAGGTTT---GAAATCTC-AACAAGAATACATAT--------TCCGTGCATGTTTGatccattttctgaatttcattaattttaaagttttgttcTGACGACGCCATCGTACTTTtcttt--tggaaatgttttttttgataatgtaAAAGTACATTTACTATTGTTGGAATCCACGGAACATAATG--GTCATCTCT
i caeRem4.Crem_Contig15 I 84 C 0
s caePb3.Scfld02_0       3444147 174 -  4147112 -----tgttttgaatgtttctatttt--cccACAATGATTTTCAGCA------------------------------------------------------------------------------------------------CGTTCTATATTGGTA------ATCACca------------------------------------------------------------ctattcagaaaa--------aaaattgtgagattc----------------------------------atttat------------------tttgatc-----tCGGAAGT-------------GGTTTTGCTCCACGGATACTATTAATCTCTGATTC--TAAGAATGTTT-------CAATCTtagaatgaattc----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e cb4.chrX              17510200 1861 - 21540570 I
e caeSp111.Scaffold582    301240 194 +   484378 I

a score=-18490.000000
s ce10.chrX              2760146  62 + 17718866 -AAAAAGAAGAAAAATCATTGATGCACTTGGCGAGGTGTGTCTAGA------------------------AAAGATGAATTGTGTCA-----------------------------------------------------------------------------------------
s cb4.chrX              17512061  57 - 21540570 -aaaaatatgaaaaatcattg-----atca--------tgaatgca------------------------aaaaatgttgcg------------aaaaagag----------------------------------------------------------------aacaa-----
i cb4.chrX              I 1861 C 0
s caeRem4.Crem_Contig15   277867 160 -  1794024 ----AATCAAAAAGATTATT------CTCAGT------TgacttcaagatttttgccaaCAGAGTGATACAGAAATGTTTCGAGTTGATCAGATAAAAGGAATCGTGATTCAGTTTTCCGCGGAAGTAATTTATCTTTGGATAGAAGTCTATTAATCTGTGATCCTAACAATGTtg
i caeRem4.Crem_Contig15 C 0 I 2
s caePb3.Scfld02_0       3444321  24 -  4147112 aaaaagaagaaaagagcgcA------CTTG--------------------------------------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I
e caeSp111.Scaffold582    301240 194 +   484378 I

a score=-463.000000
s ce10.chrX              2760208 54 + 17718866 -ATTCAACGAAA--AATTCAAAGAATAGGGAATCATGGAGCACTTG-CTCAGATACGA----------
s cb4.chrX              17512118 46 - 21540570 attcggaaaaaaaga---cGAATA------------AGAGCACTTGCCAAAGATGCGA-------TAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   278029 63 -  1794024 atttcaaaaaaaagaagtcaaaaagCAAGC----ATAGAGCACTTG-CGAAGATGCGATATCGTGTAG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    301434 60 +   484378 -ATTCATCGAAacgaattcgaaaaagaaga------aacggaCTTG-CAAAGATGCAATATCTTGTAG
i caeSp111.Scaffold582  I 194 C 0
s caePb3.Scfld02_0       3444345 21 -  4147112 -----------------------------------------------CAAAGATGCGATATCGTGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575051 812 +   720316 I

a score=94224.000000
s ce10.chrX              2760262 95 + 17718866 TGTTACATTGTGTTTGTGTTGTTCCGTCTTACTAGAAACAAGTGAAGCGATACAATTAAATTCAGATGCCAAACCTCA-GCCAGAATAATGAGTAT
s cb4.chrX              17512164 89 - 21540570 TGTTACG------TTGTGTTGTTCTGTCTTACGAGAAACAAGTGAAGCGAAACAATTAAATTCAGATGCCAAACCTCA-ACCAGAATAATGAGTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   278092 95 -  1794024 TGTTACATTGTGCTTGTGTTGTTCTGTCTTACTAGAAACAACTGAAGCGATACAATTAAATTCAGATGCCAAACCTCA-ACCAGAATAATGAGTat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    301494 87 +   484378 TGTTACA------TTGTGTTGT--TGTTTTACTAGGAACAAGTGAAGCGACACAATTAAATTCAGATGCCAAACCTCA-ACCAGAATAATGAGTAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3444366 90 -  4147112 TGTTGTG-----CTTGTCTTGTTCTGTTTTACTAGAAACAAGTGAAGCGACACAATTAAATTCAGATGCCAAACCTCA-ACCAGAATAATGAGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   575863 88 +   720316 TGTTACATTGAGTTTGCGTTGTTCCG--------AAAACAAGTGAGGCGACACAATTAAATTCAGATGCCAAACCTCAGGCGAGAATAATAAGTAT
i caeJap4.Scaffold18213 I 812 I 554

a score=34047.000000
s ce10.chrX              2760357 157 + 17718866 ACTT----GCACATAAGGCCAA------------AGAAAGAGGATGAGAAGGCAGCCCTG-------AGTGTGAAGAA--------GATACAAAGTT-TGGCTCTGGTGCGAAAAACCGGGAAGAGTTTCAAAACAAACTTAT------ATGTAGGA----------GTAGATATAAAACTAACATACTCGAAACTCAATTCTTC-------
s cb4.chrX              17512253 173 - 21540570 ACACACAGATATACATCCCCAGACGGAATcccaaagaaaaaagatgag---acA---TGT-------AGGGTGGAAAACTGAATTCGGTATAAAGTTGGGG---TGGCGGAGAAA--------------CGAAACAAACTCAgcgataaaaattgaatagcCATGGAATATATGTAGAAT--ATATACTCGAAATTCAATTCGTC-------
i cb4.chrX              C 0 I 1889
s caeRem4.Crem_Contig15   278187 154 -  1794024 acacatacacacacaatCCAAG----------------AAAGGATGGG---ACAGCCGGC-------AGTGTGAAGAA--------GATATAAAGTT-GGG---TGGcggaaaaa-------agagtttcaaaACAAGCTTGG------AAGTagaatggaaatgaaataGATATAAAAGTAACATACTCTAAactcaattcttc-------
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    301581 152 +   484378 -CGC-----CACACATACCAAG----------------AAAGGATGAGA--CTAACTGGC-GATGGTAgt-----aaa--------gaaataaaatt-ggg---tggcggaaaaa-------agagtttcaaaacaaactTGG------AAGTAACATAGAA-----ATAGATATAAAACtaacattttccaaattcaattcttctttccgC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3444456 151 -  4147112 -CGC-----CACACAAGCCAAG----------------AAAGGATGAG---CCAGCCGGCAGGGGGCAGTGTGAAGAA--------GATATAAAGTT-GGG---TGGCGG-AAga-------agagtttcaaaacaaacttgG------AAGTAGAATAGCA---------ATATAAAACTAACATActcgaaattcaattcag-tttCTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575951 554 +   720316 I

a score=-10016.000000
s ce10.chrX              2760514 114 + 17718866 CATGTTTATTACCCAACAGTGGGAGAGAGAGAGATACCTCGTTTT-----CCCTTAACTGCATCGTTTTGGATACTACTAAC------AATATCATTATTGTTTTCAAAAATTGACTGGAAA--TAG
s caeRem4.Crem_Contig15   278349  98 -  1794024 caagtttattATTT-----------GGGGGCGT-TACCT--ATAAGTTGCCTCTTTA-TGGA----ATTTactacaa--aacaaaaataattccgttgagaatttt-----tttattggaatta---
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    301733  78 +   484378 CATGTTTATTAT-------------------ATACACCTAGATAG-----CTCT------------TTTGACTACAA--AACGCAAG-AAATTCATAGTGAATTCC-----TTGTTCCAAGA-----
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3444607  74 -  4147112 CATGTTTAGTATTC-----------GAAGAGATATACCT--ATAG-----CTCTTC--TGGATCTATTTGACTACA------------AAagtcgaaacgaa----------------aaaa-----
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I

a score=-3101.000000
s ce10.chrX              2760628 34 + 17718866 CCGAGAAGAGATAACAAGTAGGAATTCTCCATGG
s caeRem4.Crem_Contig15   278447 18 -  1794024 -----caaaaacaaaaaaagggt-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    301814  6 +   484378 -----------CTATAG-----------------
i caeSp111.Scaffold582  I 3 C 0
e caePb3.Scfld02_0       3444681 47 -  4147112 I
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I

a score=-71626.000000
s ce10.chrX              2760662 557 + 17718866  
s caeRem4.Crem_Contig15   278465 364 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    301820 430 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3444728 433 -  4147112  
i caePb3.Scfld02_0      I 47 I 170
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I

a score=-8714.000000
s ce10.chrX              2761219 163 + 17718866 GGAAGCGGCCGACACGTTCGGGATGTTTAAGGCAACTCACCGGTCGCCGGAGGCGTCTAACCGGCGCCCACATGGAAGTTCTACTTAAATGAGTCGTGTTGATAAAAATATATTATTTTGTCACTGAATATTCAT---AAACTATTCCTTTTAACTATTTTGAAAG---------------
s caeRem4.Crem_Contig15   278829 110 -  1794024 ------------------------GTT--------GTTA-CGAACGCTGTATAC--------------------------TTATTGAAAT----CGAGTTAATGTAACTATATTTTT--ATCA-----GATTCGGTG-GAATTCATGTCAACAATCATTTCttaattcaatatttttacgG
i caeRem4.Crem_Contig15 C 0 I 127
s caeSp111.Scaffold582    302250 126 +   484378 GGGAGAAG-TAATATAT------TGTTTACAGAAAATTA-CGAACAA----------------------------------TACCAAAATAA--CAAATTGGCttaacttcattttcagatcat----taTTTGTTGAAAACTTCCACTAataccaattttttcatac----tGTTTG---
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3445161 170 -  4147112 I
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I

a score=101.000000
s ce10.chrX              2761382 27 + 17718866 ATTGCTTATATGTTATAT--GTACGGTTA
s caeSp111.Scaffold582    302376 29 +   484378 ATTGATCTCATGTGAAATTAGCCCGTCTC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3445161 170 -  4147112 I
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I
e caeRem4.Crem_Contig15   278939 127 -  1794024 I

a score=-4588.000000
s ce10.chrX              2761409 84 + 17718866 AAAATTCAATTAGAAGCAGCTTTTGaaaaaaa-------------------aaattaatttttaatattGGACACATTAATCAGTAAGCCATGGTTTTTTTTT
s caeSp111.Scaffold582    302405 38 +   484378 ----CTA----------------CCACAATGA-----------------------CATGTCTCGatataaaa------------gaagaattg----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3445331 91 -  4147112 aacaCTAAATTTGAAACCGTGCTTCATCATAAACTGTCAGTACTACTTCagcaatcatttttcaatacttgA------------GCAGTAATGTTTCCATTGT
i caePb3.Scfld02_0      I 170 C 0
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I
e caeRem4.Crem_Contig15   278939 127 -  1794024 I

a score=-1956.000000
s ce10.chrX              2761493 14 + 17718866 AACTTCCAGGCTCT
s caeRem4.Crem_Contig15   279066  7 -  1794024 -------AAGTTCT
i caeRem4.Crem_Contig15 I 127 C 0
s caeSp111.Scaffold582    302443  2 +   484378 ------------at
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3445422  5 -  4147112 ---------AATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   575951 554 +   720316 I
e cb4.chrX              17512426 1889 - 21540570 I

a score=300.000000
s ce10.chrX              2761507 8 + 17718866 AAGAAACA-
s caeRem4.Crem_Contig15   279073 8 -  1794024 GGAGActa-
i caeRem4.Crem_Contig15 C 0 I 8
s caeSp111.Scaffold582    302445 8 +   484378 gaagaatg-
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3445427 8 -  4147112 GGAAAAta-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213   576505 8 +   720316 -aagaaaag
i caeJap4.Scaffold18213 I 554 C 0
e cb4.chrX              17512426 1889 - 21540570 I

a score=140556.000000
s ce10.chrX              2761515 188 + 17718866 ----AAAAAAAGAAGT----GGAGCGGTGGGAAAGTTTCAA-TTCCTGAGTATCTTATACTCGTTTCGTATAGA---------GAGCAAATGAGAAGAGCATAATAAAAAAAAGCAT-GA------TGAACA-CATAGGCTTGACAAAAATATAATAATAGCATCAAAGAATACTGACGTGAATGG-----------ACGACGGAG--A-------------AAAGAACGGAGCAGATTC
s cb4.chrX              17514315 219 - 21540570 ----aaaaaaacaggacCTAGGA--------AAAGTTTCAAGTTCCAGAATAACTTATACCCATTTCGTATAGGatgggagaaaagaaaatgagaagagcaTAATAAAAA--AGCATGGA------TGAACACCATAGGCTTgacaaaaatataataataGCATCAAAAAATACTGACGTGAATGAGGAATGGAAGAAGAACGCTG-CGTCtggagaataagaaaaagaagagcagAATC
i cb4.chrX              I 1889 C 0
s caeRem4.Crem_Contig15   279089 190 -  1794024 ----aataaaagagaa------a--------aaagtttcaa-ttccTGAATAAGTTATACCCTTTTCGTAtacg---------aagaaaatgagaagagcaTAATAAAAA--AGCAT-GA------TGAACA-CATAGGCTTGAC-AAAATATAATAATAGCATC-AAAAATACTGACGTGAATGA-GAATGGAACGAAGACGGCG-CG---GGCGA-----AAAGAACGGAGCAGAATT
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    302454 188 +   484378 ----aacaaCAAAGGG----ACA--------AAAGTTTCAA-CTCCTGAATAAGTTATATCCGCTTCGtataga---------gagaaaatgaaaagaccATAATAAAAA---GCAT-GA------TGAACA-CATAGACTTGac-aaaatataataataGCATCAGAAAATACTGATGTGAATGA-GAATGgaacgacgacgacgaca-------------aaAGAACGGAGAAGAATC
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3445438 188 -  4147112 ----aacaaaaaagaa----tga-------gaaagttTCAA-TTCCTGAATAACTTATACCCTATTCGTatagg---------aagaaaatgagaagagcatAATAAAAA--CGCAT-GA------TGAACA-CATAGGCTTGAC-AAAATATAATAATAGCATCAAAAAATACTGACGTGAATGA-GAATGGAACGACGACAACG--G-------------AAAGAACGGAGAAGAATC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   576513 191 +   720316 taagaaaaaaagggaaaaaaaga--------atagtTTCAA-CTCCTGAATAACTTATACCC-TTTCGTATAGG---------AAGGAAATGGAAAGAGCATAATAGAAA--AGCAT-GATGAACGTGAACA-CACAGGCTTGAC-AAAATATAATAATAGCATC--AAAATACTGACTTGAAAGA-GAATGG----ATGACGAGC--G-------------AAAG---GGAACAGAATC
i caeJap4.Scaffold18213 C 0 I 1010

a score=8677.000000
s ce10.chrX              2761703 15 + 17718866 ACTCCAGAATATG---TG
s cb4.chrX              17514534 18 - 21540570 ACTCCAGAGAATGCGCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   279279 15 -  1794024 ACTCCAGAATATG---TG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    302642 15 +   484378 ACTCCGGAATATG---GG
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3445626 15 -  4147112 ACTCCAGAATATA---TG
i caePb3.Scfld02_0      C 0 I 1278
e caeJap4.Scaffold18213   576704 1010 +   720316 I

a score=-7781.000000
s ce10.chrX              2761718 78 + 17718866 -GGAGTAGACACCGCGAAGAACACCAA-------GGCACGCGAAAAATTCCAGCAAAAATTCCAGGA---ATTTGTAAGGAAAATATAA----------------------
s cb4.chrX              17514552 59 - 21540570 AGGTTCGC------------------TATATAGTGCCATTCT-GAtacg-------gaattt-tgaa---ttttgtaacGGAAATGTGG----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   279294 80 -  1794024 GGGTTCGTCTAAGGCGTGGAACACTATGTATATTGTCACGCCAGCTATC-------GAATTTGTGAATATTTTTGTGATG--AATTGGG----------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    302662 96 +   484378 -GGTTTGGTCGAGTCGAAGAAC----AATATATTGTCACGTCAAATATT-------AAAT---TAGATatattcgaagaaatcaTCAGGttcaaaacaatgaaaaaaacaa
i caeSp111.Scaffold582  I 5 I 30
e caePb3.Scfld02_0       3445641 1278 -  4147112 I
e caeJap4.Scaffold18213   576704 1010 +   720316 I

a score=-3664.000000
s ce10.chrX              2761796 29 + 17718866 TTTTAG---------------------------------------------------------CTGCAGTTTTTTTTTTCAATTCC
s cb4.chrX              17514611 49 - 21540570 TTTGAG-------GGACAATTGAAATGGGGAGAA----------------------GGA----GGGAAATTACTTTTTCCAG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   279374 82 -  1794024 TTcggaccgaattaaaaaaatgaaattgaaaaaaatgtgcagtttcaaaaaacagtggAGTCTGGAAAATTCCTTTTCTCAT----
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3445641 1278 -  4147112 I
e caeJap4.Scaffold18213   576704 1010 +   720316 I
e caeSp111.Scaffold582    302758 30 +   484378 I

a score=-1787.000000
s ce10.chrX              2761825 85 + 17718866 ACATACATA-------ACCTGATCTTAGAAGACCTCTGTTGCTGCATTCATTCCGGATGAAAAAGCAG--AGACACACACGTTTATATTAATTT-----------------------
s cb4.chrX              17514660 68 - 21540570 ----------------GGGTCATATGaatgaataattttcatttcattga---------gaaatttagaaaagcGCTCACGTGTA-GTTAAGTG-----------------------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig15   279456 77 -  1794024 -----AATTGTTCGTCGTTTTCTGTGAATGGATGACTCTTTATTCAATGA---------AAGTTTCAG--AGGCACTCATGTGTA-GTTAATTG-----------------------
i caeRem4.Crem_Contig15 C 0 I 76
s caeSp111.Scaffold582    302788 96 +   484378 AGAGGAATT-------ACTTGGTCTGAGTGGA--ACTATTTTATAATTCG---------ATGTCTCAG--AAGCACTCACGTGCA-GTTAAatagatgaaatgaaataagtTACCTC
i caeSp111.Scaffold582  I 30 C 0
e caePb3.Scfld02_0       3445641 1278 -  4147112 I
e caeJap4.Scaffold18213   576704 1010 +   720316 I

a score=-3261.000000
s ce10.chrX              2761910 34 + 17718866 AGAAGCGCTAAGCGCTAAACTATGCACACGTTTT----------------
s cb4.chrX              17514742 26 - 21540570 ---------aaaattgtcatctaataagttttatt---------------
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold582    302884 50 +   484378 AGAGTTATGAAAAGTGCAATTACGCAGTCTCAATTAAAAGTTCACGTGAG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3445641 1278 -  4147112 I
e caeJap4.Scaffold18213   576704 1010 +   720316 I
e caeRem4.Crem_Contig15   279533 76 -  1794024 I

a score=-2479.000000
s ce10.chrX              2761944 20 + 17718866 -TGTTCCTCGATCT-TTCCAAT-
s cb4.chrX              17514768 19 - 21540570 -ttctgCACGAACC-CACC-AT-
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   279609 20 -  1794024 TGTCTG-ACAatct-tttcaat-
i caeRem4.Crem_Contig15 I 76 I 3
s caeSp111.Scaffold582    302934 23 +   484378 TCTTTCCCCGTTTtatatcaatt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3445641 1278 -  4147112 I
e caeJap4.Scaffold18213   576704 1010 +   720316 I

a score=6850.000000
s ce10.chrX              2761964 48 + 17718866 TCATATTTTT------TGACTTACCTTGAAATGAAACTGTTGAAGAACTGAATG
s cb4.chrX              17514792 32 - 21540570 TCACTTCT----------ACTCACCTGGAGCAAGAAC------------GTCTG
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig15   279632 47 -  1794024 ttatttttcc----cacAGCTTACCTTGGAATGGAACTGTT---GAACTGAATG
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    302957 51 +   484378 tcatttttgtttctagtAACTCACCTTGAAATGGGACTGTC---AAATGTGTTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3446919 45 -  4147112 TCACATTTGT------CAACTCACCTTGAAACAAAACTGTT---GAATCATTTG
i caePb3.Scfld02_0      I 1278 C 0
e caeJap4.Scaffold18213   576704 1010 +   720316 I

a score=275723.000000
s ce10.chrX              2762012 499 + 17718866  
s cb4.chrX              17514824 524 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   279679 524 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    303008 507 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3446964 504 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   577714 535 +   720316  
i caeJap4.Scaffold18213 I 1010 I 43

a score=-25507.000000
s ce10.chrX              2762511 90 + 17718866 TGGATGATTAACATATGACACTAA----TAA---TTAAAAGTCTAGAAACTTTTTAAATTTTTGTAGATTCAGATAATTAAATTAAAAGTGAAGTAA
s cb4.chrX              17515348 87 - 21540570 T-TAGATGTGGATTATGACGCAAA----CAACTATT--tcgttttagaatttttt---ttttcagaatttcaatataCTACgccaaacaaaaaataa
i cb4.chrX              C 0 I 2174
s caeRem4.Crem_Contig15   280203 67 -  1794024 TATAGATCAAAATT-TGTAGCAAATTGTCAAATATTagtgaaatcagaa--------------agaaatttga---------------aaatagtaa
i caeRem4.Crem_Contig15 C 0 I 402
s caeSp111.Scaffold582    303515 27 +   484378 tttgttaTGAGATTATAAGGTATT----CAA------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3447468 17 -  4147112 TGTAT----------AAAGCTGCC----CAA------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   578249 43 +   720316 I

a score=0.000000
s ce10.chrX              2762601 1 + 17718866 C
e caePb3.Scfld02_0       3447485 0 -  4147112 C
e caeJap4.Scaffold18213   578249 43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeSp111.Scaffold582    303542 0 +   484378 C
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=-6660.000000
s ce10.chrX              2762602 155 + 17718866 GCCAGTATAGTATAAAAGTGAAAAgcaaatttatcaactttgccgcttgccaggtacggaaaatgggacaaaaaatgtttaccgaaatt----------attgattttgttccaaataatctagtgaaacagcatagttaagttatttcaaaa-aaaatttaagca
s caeSp111.Scaffold582    303542  94 +   484378 --------TGTAAAACAGTATTGGGC----------ATTTTCAAACTTGCaagatgt--------------------ttcaaaaagatt---------aaTTAA------TCTGAATAATTgatcaggaaaa------aaagagatctcTGAT-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3447485 131 -  4147112 --------AATCTCAAAGGTTTGAAcaa------tgattttgagaatt-caagGCGT----ACTTTGCCACCA----TTCAGCTTGATTTCGTATTTGAATCAAGT---TTCCGAATAA---ATTGGAACTA------GAAGTTGTTTTTAAATATCATTCAAGAA
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18213   578249  43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=-88.000000
s ce10.chrX              2762757 45 + 17718866 ggccataaagagactgtattacggattttatcgaaaaatcaagct
s caeSp111.Scaffold582    303636 32 +   484378 TCTCATGAACTGATTGTGttgtttatttcatt-------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3447616 30 -  4147112 I
e caeJap4.Scaffold18213   578249 43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=-10476.000000
s ce10.chrX              2762802 208 + 17718866 gtgctaaaaattcaatatcttggtgcaccaaaaatataaaaaagttgacacatttttcttagttggctcaaaatgacaaacttgcc--------caatttgccgcattttccgagctcggcaagttttgagTTTCAAAT------TTGGTAAAGCACCGCTCCAAATTCACtgaggcaaaactgaga--ttttaccag------ttttcagaaaatca-tagaaaatttag
s caeSp111.Scaffold582    303668 139 +   484378 ----------tttattat-tggGTGtaac-------taaaaatat-------ttttt----------tttaaaagtcaaAGTT-----------CAATTATTTGCA--CTCCAACTCTTA-------------------------TCATTAAA------ATTC----TGCCTAACACTGCAATTAAATGTTTTGCGAA--------TTCTTAACAGTG-AATCATATTTAG
i caeSp111.Scaffold582  C 0 I 46
s caePb3.Scfld02_0       3447646 175 -  4147112 ----------------AT---GTTAAAAc-------ttggaaag----------ttt----------tcagaaaacaaaagttgcAGAAACAAGCAATTACCTATA---TAtgattctgataaaaattg-gtttcttttcagtggtcattagt------tttcaaaacaagtgaaaaaagaataataactTTCAAGAGATCAAGTTTTCTTACCACCATAAGTTTCTTTAG
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18213   578249  43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=22.000000
s ce10.chrX              2763010 69 + 17718866 aacttttaaaaaattgtttactatggcattc-----tttcaatact--gtaggaccgttttatagggttattcaag
s caePb3.Scfld02_0       3447821 73 -  4147112 GAACTTGAAGGTATTGCATTAACTAGCAGTTTGGAATCTCAACACCTAGTTGGA-CATTTTCTA--GTCATACTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   578249 43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeSp111.Scaffold582    303807 46 +   484378 I
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=-19188.000000
s ce10.chrX              2763079 359 + 17718866 ------taa--tgtcg--------------gaaaactgaaa--------------------------------gggaagaa-----aaatgacgtcacagctgtatcaaaataaattttttaaaaacatgtattttaatacagctatcacgacataaatgtatttaaatatattgttcaaaattgctttaataacTGGCATTCATTTTTTGAAAATTTCAAATAATAAAACCGAATATTTGAAGAAAAAAATTTATGATAAGAAACAAGTTCGGAAAAAGGGTAACGCAAAACAGAAAACACTACAAATAAATTTAGGAACTCAAACATTTTTATAGT-TTTCTTCATGTGAGAGCTCGAACTTTATTGCTTAATAGCTCATAGGAATAGATTTTCTCTGAATTGTTTGGCACTGCATC
s caeSp111.Scaffold582    303853 170 +   484378 ------TAG--TATCG--------------GAAACCCGGAATGC-----------------------------TAGCAGA------AAATGATAT------------------ACCTCTCTGAGAGCTGAGC----AAGGTAATAACTTCAGAATGGGTTCGTTT-----TATGGCCT-GAATAG------------------GTCG-------------TGCACTTAAGATGAATAT-------------------------------------------GTTTTGTATAACAGAAAAACTTG---------------------CCGTTTATAACATGACTA------------CTAGAAC---------------------------------------------------------
i caeSp111.Scaffold582  I 46 C 0
s caePb3.Scfld02_0       3447894 295 -  4147112 GTCTTTTAGACTACTGActtaaagagaaaaaaaatacaaaacaccATATCTAAGGAAGTCAGAGCCTTTCCAATAACGGAAACTTGAAATGTTAT-GCAAGTGAATGAGGAGCACTTTCACCAAATCTGGCA----AAGGTAATAACCCCAATAGACCTGGGTTT-----TATTGCTC-AATTGGCT---ATAGCCGGCCTT-GTCGACCATAACTTTATCTCAGTCTACACGAATAT------------------------GAACAATT-------ACGAGTAATGGGTAACCGAACAAACCGAAA---------------CGACCGCCTCCAGAAT-ACTATACAAGT-----CTATAAA---------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   578249  43 +   720316 I
e cb4.chrX              17515435 2174 - 21540570 I
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=29.000000
s ce10.chrX              2763438 3 + 17718866 ACT
s caeJap4.Scaffold18213   578292 3 +   720316 atc
i caeJap4.Scaffold18213 I 43 C 0
e caePb3.Scfld02_0       3448189 0 -  4147112 C
e cb4.chrX              17515435 2174 - 21540570 I
e caeSp111.Scaffold582    304023 0 +   484378 C
e caeRem4.Crem_Contig15   280270 402 -  1794024 I

a score=515.000000
s ce10.chrX              2763441 2 + 17718866 AA
s caeRem4.Crem_Contig15   280672 2 -  1794024 AA
i caeRem4.Crem_Contig15 I 402 C 0
s caeSp111.Scaffold582    304023 1 +   484378 -G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3448189 1 -  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   578295 2 +   720316 AA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17515435 2174 - 21540570 I

a score=181116.000000
s ce10.chrX              2763443 222 + 17718866 ACT-CACGAGTTCTGGATAATGGTAGATAATACTTTGT---CTTTGTTGGTCTGTATGATGACCGATGAAGTGGGTTCATT-GTGAATGTTGGCGA--GTTTGCAGACAAATTAAAAAGTGGCAAAGTTTAGAGAATGGGTTAGTTG-GAACATGTGGTTGCAATAAAGGATGCCGACTTGAGCATT-GTGGACAGAAGATTTACGACGATCACGGGCCGTATTGC------GAAGA
s cb4.chrX              17517609 233 - 21540570 ACT-TACAGTTTCTTGACAACGGTAGGTATTTGGTGGTTCGCAATGCCGGTCGATACGATGATCGATGAAGAGGATTCATTGGTGATTGTTTGCGATTGTTTGCggacaaattaaaaagtggCAAAGTTTAGAGAATGGGTTACTTGCGGACATATGGTTGCAATAAAGGATGCCGACTTGAACATT-GTGGACACAAGATTTACGACCATCGTGG--CTTGTTGCATCGAGAGGGA
i cb4.chrX              I 2174 C 0
s caeRem4.Crem_Contig15   280674 221 -  1794024 ACT-TACGTGTTCTGGATAATGGTAAATATCTGTTGGTACGATTCACAGGTCGATATGATGAACGATGGAGAGGGTTCATT--TGATTGTTTGCGA--GTTTGCAGACAAATTAAAAAGTGGCAAAGTTTAGAGAATGGGTTACTTG-GGACATATGGTTGCAATAAAGGATGTCGACTTGAACATT-GTGGACACAAGATTTACGA-CATATCGG--CCTGTTGC------AAGGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    304024 222 +   484378 ACT-TACGAGTTCTGGATAAAGGTAAATATCTAGTAGTACGGTTCGATGGTCGATAAGATGATCGATGAAGAGGATTCATT--CGATTGTTTGCGA--GTTTGCaaacaaattaaaaagtggcaaaattttgagaatggGTTACTTG-GGACATATGGTTGCAATAAAGGATGTCGACTTGAACATT-GTGGACACAAGATTTACGACCATCGTCG--CCTGTTGC------AAAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3448190 222 -  4147112 ACT-TACGGGTCCTGGATAAAGGTAGATACTTGGTTGTACGATTTGCAGGTCGATATGATGATCGATGAAGAGGATTCATC--TGATTGTTTGCGA--GTTTGCAAACAAATTAAAAAGTGGCAAAGTTTAGAGAATGGGTTACTTG-GGACATCTGGTTGCAATAAAGGATGTCGACTTGAACATT-GTGGACGCAAGATTTACGACTATCGTGT--CCTGTTGC------AATAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   578297 208 +   720316 ACTGTACGTGTTCTAGACAATGACAAAAACTTGGTTGTTCGATTGGCGGGCCGGTACGATGATCTGTGAATTGGGTGCATT----------GGCGA--GTTTGCAAGCAAATTAAAAAGTGGCAAAGTTTGGCGAATTGGTCAGTAT-GAACACATGGTAGCAATAAAGAAT-----CTAAAACATTGGCGGACCCAAGATTTATGACG---GTGC--CGTGGAGA------AAAGA
i caeJap4.Scaffold18213 C 0 I 849

a score=7873.000000
s ce10.chrX              2763665 15 + 17718866 TGAGCACAAATCAGA
s cb4.chrX              17517842 14 - 21540570 TCACCACAAATCAG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   280895 15 -  1794024 TGAGCACAGATCAGA
i caeRem4.Crem_Contig15 C 0 I 260
s caeSp111.Scaffold582    304246 15 +   484378 CGAGCACAAATCAGA
i caeSp111.Scaffold582  C 0 I 254
s caePb3.Scfld02_0       3448412 15 -  4147112 TGAGCACTGATCAGG
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18213   578505 849 +   720316 I

a score=0.000000
s ce10.chrX              2763680 3 + 17718866 CAG
e caePb3.Scfld02_0       3448427 3 -  4147112 I
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17517856 0 - 21540570 C
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=459.000000
s ce10.chrX              2763683 16 + 17718866 CTTCTAAAGTTATTGT
s cb4.chrX              17517856 10 - 21540570 ------AAGATATTGT
i cb4.chrX              C 0 I 159
s caePb3.Scfld02_0       3448430 16 -  4147112 CATGGAAATGGACTAT
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18213   578505 849 +   720316 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=177.000000
s ce10.chrX              2763699 7 + 17718866 TCAGAAT
s caePb3.Scfld02_0       3448446 7 -  4147112 TGGAAAt
i caePb3.Scfld02_0      C 0 I 154
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17517866 159 - 21540570 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=0.000000
s ce10.chrX              2763706 120 + 17718866 TATAGCATCTTTTTTGTCAGGTAGGTTAATTCTGTTTTTCTGTTTTTTACATTTTTGACTGGCCGAACTTTTCGATTGAATTTCTTTGATTTTTTCGGCAATTTTTTTTTTGTTGTAAAA
e caePb3.Scfld02_0       3448453 154 -  4147112 I
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17517866 159 - 21540570 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=48.000000
s ce10.chrX              2763826 36 + 17718866 TTGATCATGTTAA----TTCAATTGCATGGAAAAACAGAT
s cb4.chrX              17518025 37 - 21540570 TTCATCATAATAAGAATTTAGTTTGGATAGTTGAACA---
i cb4.chrX              I 159 C 0
e caePb3.Scfld02_0       3448453 154 -  4147112 I
e caeJap4.Scaffold18213   578505 849 +   720316 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=588.000000
s ce10.chrX              2763862 11 + 17718866 TTGTTATATAA
s cb4.chrX              17518062 11 - 21540570 CTTTTATATAA
i cb4.chrX              C 0 I 118
s caePb3.Scfld02_0       3448607  8 -  4147112 TTGTCata---
i caePb3.Scfld02_0      I 154 C 0
e caeJap4.Scaffold18213   578505 849 +   720316 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=381.000000
s ce10.chrX              2763873 58 + 17718866 TACATTATTACATTACATTTACATTAGGGTTTTTATACCTCCCTACTACTCTACCATG
s caePb3.Scfld02_0       3448615 38 -  4147112 tacattttcagatactAATTGAATT--------------------TTACTCCACTGTG
i caePb3.Scfld02_0      C 0 I 48
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17518073 118 - 21540570 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=0.000000
s ce10.chrX              2763931 58 + 17718866 CGACATCcgcctcctgtgtagcgcggcgcggaactcggaaagtgtcggctgcggcaaa
e caePb3.Scfld02_0       3448653 48 -  4147112 I
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17518073 118 - 21540570 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=584.000000
s ce10.chrX              2763989 9 + 17718866 agaactatc
s caePb3.Scfld02_0       3448701 9 -  4147112 AGAATTATT
i caePb3.Scfld02_0      I 48 C 0
e caeJap4.Scaffold18213   578505 849 +   720316 I
e cb4.chrX              17518073 118 - 21540570 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=-14651.000000
s ce10.chrX              2763998 315 + 17718866 --atttcgtggtatcgtggttcaaaacaccaagcctttgattttctgccatCAAAAAAGGCTGTGGGTTGATTCAAA----TTT--TTGGCGCACTTTTTGGGTTTGGCCGCCACCTCGGCCCATTGTCAACAATTTTCAAAAAAACTTGACTAAAAGCTTAAAATTAAAACATCAT--TGTATTTTGTGAACAATTTGTGAAAAACATTATCTTCGATACAAAAAGTTCCTTAGATATTCCTATAGATATTTCT-GTGAGAAGTTTAA---TTGTGAATTTCTA-------------CTTTT---TCCTTATCAATGTTTCGACATTCCCATCACACTTTTGTA
s cb4.chrX              17518191 254 - 21540570 --ATGTTGGGATATCA----CCGAAGC------CCTTTAAAGTGCTCTGTACCACGAAGAC----------cccaaaattcttt--ttttcgaatcattttcctttttccggtttctttttcc---gtctccgacttttagaaaactttgaatcatcg---------aaaattttac----cactttct---caattt-------------------------------------atattcct---tatttttttagtaaattgtttcaaaattgttgttGTCGCTGTTatcgaacattttttctcttcttatcac--cttcgaaagtct--ttttttttc----
i cb4.chrX              I 118 C 0
s caePb3.Scfld02_0       3448710 182 -  4147112 CATTGTTG----------------------------TTattgtg-----------------------------aaaaattattttattttcgaactattttcgtgaaaaaagt-------------------GACTT---GGAAACCTGAAAACAATA---------TAATAATTATCATGCACTTTCT---CACTTT------------------------------------gacatttc-----attcattt--tgaaatatt------ttgttattttctc-------------acTTTATGTCCTTATCA----GTAGCAATTGC--TCGTTCTTC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   578505 849 +   720316 I
e caeSp111.Scaffold582    304261 254 +   484378 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=300.000000
s ce10.chrX              2764313 1 + 17718866 C
s cb4.chrX              17518445 1 - 21540570 c
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold582    304515 1 +   484378 C
i caeSp111.Scaffold582  I 254 C 0
e caePb3.Scfld02_0       3448892 0 -  4147112 C
e caeJap4.Scaffold18213   578505 849 +   720316 I
e caeRem4.Crem_Contig15   280910 260 -  1794024 I

a score=17637.000000
s ce10.chrX              2764314 81 + 17718866 TTGCTCCTCTTTTTCATGTTTTTTCAAACGCCAAACT--ACTGAAACGA---GACCCTC--------------TGTTTTAATCTGAATTCAGT---ATCCATT
s cb4.chrX              17518449 97 - 21540570 ttcctttttttttcagtgtgttTT------CCATTTCTGACTAAAACGAATCGGCCCTCTCTGCTGGTTTGCGTGTTTTAATCTGAATTCAGTTGctcctttt
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   281170 75 -  1794024 TTCCTTCccctttttgtgtttttt------ctcaacCT-ACTGAAtcca-----------------gttttc-tgttttaatcTGAATTCAGT---Ttctatt
i caeRem4.Crem_Contig15 I 260 C 0
s caeSp111.Scaffold582    304516 80 +   484378 -TCGCTCTTCCTTTCCAGTGTTTT-----GCTCGACCCGAGTGAAACGACGAGACACTC--------------TGTTTTAATCTGAATTctgt---ttctatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3448892 77 -  4147112 ---CTTCCACTTTTTTAGTGTTTT-----GCTCAACCTACG-AAGACGAGGAGACCCTC--------------TGTTTTAATCGGAATTCAGt---ttctatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   578505 849 +   720316 I

a score=64442.000000
s ce10.chrX              2764395  90 + 17718866 TCAAATTCAAAGTTTTTTTTCTTTCTCTCTTTTTGT--GTGATGTC------------------TTTCCTTTTACTCAAGCCCGACTAACTCAATTTGGT-------TGTTTCCC-GG
s cb4.chrX              17518546 102 - 21540570 tcaaattcaaagttttgt-------tcttcttctcc--tatcTCTCCTTCTCACAACAGAAACGTCTCCTTTTACTCAAGCCAAACTAACTCAATTTGGG------ATGTTTCCC-GG
i cb4.chrX              C 0 I 741
s caeRem4.Crem_Contig15   281245  76 -  1794024 tcaaattcaaagtttt--------------ttcggC--GAGATGTC------------------TCTCCTTTTACTCAAGCCGAGCTAACTCAATTTGGG-------TGTTTCCC-GG
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    304596  79 +   484378 tcaaattcaaagtttt--------------tccgCCAGGAGATGTC------------------TCTCCTTTTACTCAAACCAAACTAACTCAATTTGGG-------TGTTTCCCGGG
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3448969  76 -  4147112 tcaaattcaaagtttt--------------ttctgc--GAGATGTC------------------TCTTCTTTTACTCAAGCCAAGCTAACTCAATTTGGG-------TGTTTCCC-GG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213   579354  86 +   720316 TCAattccaaagtttt-----------tttttccgc--gagATCTC------------------TCTTCTTTTACTCGAGCCAAGCTAACTCAATTTGGGTGTTTCGTGTTTCCC-GG
i caeJap4.Scaffold18213 I 849 I 5

a score=-1949.000000
s ce10.chrX              2764485 125 + 17718866 CTATGCATAGGAAGA--TGATTGCGAAATTTT-----CTTGATTCATCCTGAATAATTT----TTTTGCGTGTTTAGAAATTTTTAAAGTCTGTAATTTAGATTTGTGCTAT-----------------TGTTTTTTACACTGA-------------AAAAATTTT
s caeRem4.Crem_Contig15   281322 157 -  1794024 CATTGCATGGCGAGC--CGATTTCGAAATCTT-----CTCAACACTTCTGAGGCAATTC-CCCCTTTTTCTATGCAAAATACATCTAGCTTT-TATTTTACGTTTTGAGcctaaattttgttttcagaatatagttGATAATTAAGGTATTATCTACTGGGAATTC
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    304676  77 +   484378 CATTGCATGGCAAGC--CGATTTCGAAATCTT-----TCCAACACTTCTTAGAcgattc-tcattttttgtatt---------------------------------------------------------------------------------acgaacatttt
i caeSp111.Scaffold582  I 1 I 99
s caePb3.Scfld02_0       3449046 143 -  4147112 CATTGCATGGCGAGCT-CGATTTCGAAATCTT-----CTCAACACTTCTGAGacgattc-ttcttttttgtattcaaaagtagtctaa------aatttattttttcactagCTGTTTTGT--------TGTGCTTTGTGCTTA--GAACtggaaacaaacttttt
i caePb3.Scfld02_0      I 1 I 46
s caeJap4.Scaffold18213   579445 127 +   720316 GTGTGGATGACAAGATCCGATTTCGAAATCTCGGCCGGCCAACACTTTTTGAGCAAGCAATCCTTTTCCATGTGAGAAAGTCCTT--------TCCttggcttttttggcttactctgagttt------tatgatttgggt-------------------------
i caeJap4.Scaffold18213 I 5 C 0
e cb4.chrX              17518648 741 - 21540570 I

a score=-9379.000000
s ce10.chrX              2764610 52 + 17718866 TCCAGACTTTTCATCTGG-------------TTAAAATTTTTTTTTT-----AATGTAC----GAGGTT--TGTTA
s caeRem4.Crem_Contig15   281479 46 -  1794024 ------------AATAGT--AGCT-------TCatcgtttctgtttt---tcacagttc----aaatat--tttta
i caeRem4.Crem_Contig15 C 0 I 37
s caePb3.Scfld02_0       3449235 76 -  4147112 tcaagatttttgaataatccatctcattttcccataattattattttacaACACGATTCAGTGAAATGCCGTTTTA
i caePb3.Scfld02_0      I 46 I 30
s caeJap4.Scaffold18213   579572 36 +   720316 ttgcgacttttgtttagc--------------------tctttttttcaattacaA--------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17518648 741 - 21540570 I
e caeSp111.Scaffold582    304753 99 +   484378 I

a score=-5937.000000
s ce10.chrX              2764662 34 + 17718866 TCAG---------TGCTCACACTAA-------------------------------AAAA--------AAAGATAATAGGTA
s caePb3.Scfld02_0       3449341 82 -  4147112 TCAGACGCTTTCATATTCATATCAATTACATTTTTACACCTTGCTCatcctttttcgaaatttttctcacatgtcagatgaa
i caePb3.Scfld02_0      I 30 I 34
s caeJap4.Scaffold18213   579608 15 +   720316 ------------------ACACCGG-------------------------------------------AAGCCCAA------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17518648 741 - 21540570 I
e caeSp111.Scaffold582    304753 99 +   484378 I
e caeRem4.Crem_Contig15   281525 37 -  1794024 I

a score=-2710.000000
s ce10.chrX              2764696 24 + 17718866 -AAAATGAACACTTTTATG---AGTTGT
s caeRem4.Crem_Contig15   281562 23 -  1794024 -AATATCAATCTTATTGCG---AGTCG-
i caeRem4.Crem_Contig15 I 37 C 0
s caePb3.Scfld02_0       3449457 27 -  4147112 -aacacaatttttatttcggcCAGCTGT
i caePb3.Scfld02_0      I 34 I 6
s caeJap4.Scaffold18213   579623 15 +   720316 GAGCATGTAAGCTAT-------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17518648 741 - 21540570 I
e caeSp111.Scaffold582    304753 99 +   484378 I

a score=-8942.000000
s ce10.chrX              2764720 34 + 17718866 CACGTGCC-----------ATAGAATTCACGAATTCAGCGTCTGC
s caeRem4.Crem_Contig15   281585  7 -  1794024 -ACATACC-------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    304852 35 +   484378 TATATACCGTAAAACTATCATCG----------TCTTGTGTTTGT
i caeSp111.Scaffold582  I 99 C 0
s caePb3.Scfld02_0       3449490 45 -  4147112 TCTGTACTTTACTACAGTCCTTGAGTTCATAGCTATCGTGTTCGT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   579638 14 +   720316 -----------------------------CATGTCTCATGTTT--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17518648 741 - 21540570 I

a score=72565.000000
s ce10.chrX              2764754 138 + 17718866 CAATAAATTTTCGACGGTCGTTGTTCC-CTAAAACAAGCCAGTGCGCAAATCGTGCAAGTTCATGCGGATGTTCGGTAGCAGTGATGTGC----------AAAACGATAGAACAAAC-ACTAA----CCAAAAATACGGTTTTCTTTTTTCTAT--
s cb4.chrX              17519389 107 - 21540570 CAGTATCTTCCCAATATTCATTGTTCTCCTAGAACAAGCAA------AAATCGTGCG--------------------------GATGTGC----------AAAACGATAGAACAAAC-ACTAA----Ccaaaaatacggtttttttcttttgct--
i cb4.chrX              I 741 C 0
s caeRem4.Crem_Contig15   281592 122 -  1794024 --------TTCTCATGGCCATTGTTCT-TTAAAACAAGCTAGTGCGCAAATCGTGCAAGTTCATGCGGATGTTCGGTAGCAGTGATGTGC----------AAAACGATAGAACAAAC-ACTAA----CCAAAAATACGGTTTTTCT----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    304887 128 +   484378 TCTTATTGCTTTCACGGTCATTGTTCT-TTAAAACAAGACGAAGCATCAATCGTGCTAGTTCATTCGAATGTTCGGTAGCAGTGATGTGC----------AAAACGGTAGAACAAAC-ACTAA----CTAAAAATACGGTTTTT------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3449535 124 -  4147112 CTACA----TTTCACGGTCATTGTTCT-CTAAAACAAGACAGTGCGCAAATCGTGCAAGTTCATGCGGATGTTCGGAAGCAGTGATGTGC----------AAAACGATAGAACAAAC-ACTAA----CTAAAAATACGGTTTTT------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   579652 126 +   720316 ---------------GGTC-TTATTTC-TTAAAACAAGA--------ATGTTGTGCAAGTTCATGCGGATGTTTGG-----GTAATCTGCCGAAGAACGAGGAACGGTGAAGCAAGCAAATAAGAACCCAAAAATACGGTTTTTGCCTTTTTCTGT
i caeJap4.Scaffold18213 C 0 I 3328

a score=18037.000000
s ce10.chrX              2764892 59 + 17718866 AG-GGGTGT--TTCCTTTATTTGC----------------GCAATCTCCCCCCGGCTTTTCACTTT------CTGACCGTTGTC
s cb4.chrX              17519496 76 - 21540570 ctGTTGTGTACCTCCTATATTTGCTTCCGACCTCCCATCTCCGT---TCCTCAGCTTTTTCATTCTA-----CTGACCATCACC
i cb4.chrX              C 0 I 1151
s caeRem4.Crem_Contig15   281714 54 -  1794024 ---GTGTGT---TCCTATATTTGC----------------CCAA---CCCCcatctttttcacttct-----ctGACCGTTTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    305015 55 +   484378 ---GTGTGC---TCCTCTATTTGC----------------ACAA---CCCCCtgtcttttcacttttt----ctgacCATTGTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3449659 58 -  4147112 ---GTGTGT---TCCTATATTTGC----------------GCAA---CCCCc-gtcttttcacttttttcccctGACCGTTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I

a score=-8235.000000
s ce10.chrX              2764951  73 + 17718866 CC----AATTTTACC-CCATATTTAGGTTTTTTTTTTCA---------------------AAA--------------------------------------CTCGTCAAAATT-----TAATTTTT---------CTACATATTTCAAGTT
s caeRem4.Crem_Contig15   281768 121 -  1794024 CT----GGATTAACTCCTGAATTGAATTTCGTAGACTCG---------------------ATC-----CGTTCTCCTTCTCCGACACTACTGTTTTATGCCcccgtctatttttatttttccgttttattCCCATCGTCATGTTCCAACTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    305070 136 +   484378 CTAGGGGGGCTAACT-CTGAATTGAATTCCGTTGATTCGATCCCCTGCACAACTTTTTATATCCCGtctattttccatttccg-------ttttttctcctcgCCTCAGGCCTTGTTCCAACTTTTTA-------CGgcttgttgtttttg
i caeSp111.Scaffold582  C 0 I 29
s caePb3.Scfld02_0       3449717  76 -  4147112 CT---GGGGCTAACT-CtgaatcaaattttgtttattcG---------------------ATC----------------------------------------CCTCGGA--------CAACTTTTTATATCC--Cggctatttttctatt
i caePb3.Scfld02_0      C 0 I 91
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17519572 1151 - 21540570 I

a score=-4044.000000
s ce10.chrX              2765024  65 + 17718866 ---------------------------------------------------------------------------CAAGACGGTAACTTT----------AAAAAGTGGAA--------------------------------------------------------------------------------------------TGAATTG-------------AACTACGAGGCAGCACGAAAAAAAAAGAATTC------
s caeRem4.Crem_Contig15   281889 258 -  1794024 TAACGgcttgttgtttttgttgacAGGAATGAGGCAGAAGAAGCGTCCCGCACATGgaaagtcttgaaaatgcaTTAAACTGGTAATGCGAACCCTTCAAAATAGGTGAAATTgtctt--attgttttcttttttttcgagaatattTTGCCTGAAATAATTGCGAAATATTCATTCG-TGCTCATCATAGCTCACATGATTGTGaattgaaaataggaaaaaaacaacgagaaacaagaaaaagaaatgaatttcgTCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    305235 175 +   484378 ----------------------------------CAGAG-----------------------CTCGGAAATGCATTAAACTGGTAATGTG--CCACTAGAAATAGGTGAAAttgtctttctcttttctct--------gagaattgtttttttg---tcattgCGAAATATTCATTGGTTGCTCATCATAGCTCACATGATtgtcaattg----------aaaaacaaaccgagaagacaaaaaaaaatgaattt------
i caeSp111.Scaffold582  I 29 I 7
e caePb3.Scfld02_0       3449793  91 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17519572 1151 - 21540570 I

a score=-70135.000000
s ce10.chrX              2765089 1043 + 17718866  
s caeRem4.Crem_Contig15   282147  731 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    305417  694 +   484378  
i caeSp111.Scaffold582  I 7 I 6
s caePb3.Scfld02_0       3449884  942 -  4147112  
i caePb3.Scfld02_0      I 91 I 6
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17519572 1151 - 21540570 I

a score=88459.000000
s ce10.chrX              2766132 298 + 17718866 cctttaaACATGTATTAAGAAATTTCTACTCA-----TCATAAACCATATTTGTTCCCGTTTTCGTTCTTCTAAACTCATCCAAACCGACGTCTTCC--ATTCATTT--TTCTATGTTTACTCAATGAAGGAAGCCGAATTCTCAACCGGTAATTATGAAACTTTCTTGACACTTTCGATTCCTTAC-----TTTATTTCTAA-------------------------G--TCTCATGGGGTATTCCAAGATTTTATCTTTTGTCAGCTGCTTG------TCGATTTGCAAACTCAGTTCTAATTGTTCATCAAAAGCCTCTTTGCAATTTGCATTTAAATTTTC
s cb4.chrX              17520723 305 - 21540570 CCATTACACATGCATTG-AAAACTGCCAT---------------CCATGTTTGTTCGTTGTTCG--TCCTTTAACCTCATCTAAG-----GATTTCCCACCCACCGcgtttgtttgtttttc---------------aactttcgaTTCGTAATTATGAAActtttcc--ttatgtttcttcttttcccccttttgcttcttcttctagtttcttttcaaattctaaatttcctaTCTAACTGAGTAAAGATCTTATCTTTTGTTCGATGCTCGCTGCTATTGAGCTGCGAACTCAATGCTAATTGCTCATCAAAGCCCTATTTGCAAATTGCGTTTCAATTCTC
i cb4.chrX              I 1151 I 1195
s caeRem4.Crem_Contig15   282878 288 -  1794024 ---TTACACATGCATTG-AAAACTATCATCAA---------AAACCATGTTTGTTCGTATTTCG---CTTCTAACCTCATCTGaa-----gttttccctttttctta--cTATTTGCTTTTC--TTGAAGCGA---AAACTTTCGATTGGTAATTATGAaacttttcc----gtttcttttcctttctcatctttccttcttc-------------------------tcttttatttgagtgaattgagatcttatcttttGTCTGCTGCTTGCTGCTATTGAGCAACGAACTCTATGCTAATTGCTCATCAAAGCCCTCTTTGCAAATTGCATTTCAATTCTC
i caeRem4.Crem_Contig15 C 0 I 916
s caeSp111.Scaffold582    306117 269 +   484378 CTATTACACATGCATTGAAAAActgtcttcaa-------aaaaactatgttTGTTCCTATTTCC---CTTCTAACCTCatc-----------ttccctttttcaacA--TTATTTGCTTTTC--ATGgag-aa---aaactttcgatttGCAATTATGAaactttctt----atttcttcttca--------tttccgtTTAC-------------------------T----------AGTTTGTGAAGATCTTATCTATTGTCTGCTGTTTGGTGCTATTGAGCTACGAACTCAATGCTAATTGCTCATCAAAGTCCTCTCAGAAAATTGCATTTCGTTTCAC
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3450832 277 -  4147112 CTATTACACATTCatggaaaaactaaaactaagACCATCGAAAACCATATTTGTTCCTATTTCC---CTTCTAACCTCATCTGAA-----G-TTTCC--TTTCATCA--ttatttacttttc----------a---aaactttcgatttgCAATTATAAaactttctt----ctatttcttccat-------tttccatctAT-------------------------T------TGGGGGTGAATGAAGATCTTATCTTTTGTCTGGCGCATGCTGCTATTGAGCTACGAACTCTATGCTAATTGCTCATCAAAGCCCTCTCAGAAAATTGCATTTCAATTCTT
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I

a score=29.000000
s ce10.chrX              2766430 32 + 17718866 TTT------GACTTTCGTACTCG---------ATTTTCTTGATTTTT------
s caeSp111.Scaffold582    306386 50 +   484378 GCTAGATGCAGTGTTCCCAATTG---TCGTCTATTTTCTTGCTTTCTAAGATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3451109 40 -  4147112 GCT-------GTGTTCGCAATTGTCATCATCCCATTTCTTGATTTCT------
i caePb3.Scfld02_0      C 0 I 1068
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I
e caeRem4.Crem_Contig15   283166 916 -  1794024 I

a score=-1548.000000
s ce10.chrX              2766462 228 + 17718866 GGAACTCACAAAACCTTTTTCAAAAAAATATATTTGTGAT-------CTACCTGCTGGATGCTTTCTATGGTAGTTGTTT-----------------CTTTTTGCGG--------------------------------TCTGTTTTGTCGGGTAGATCAAATGCTTGGTTTTT--------------------------GAAAAAAAACTGAAAAAATTTCT----TGAGGGTGTAAAATGCAAAAAAATTAATTCCCGTCCATTGAACTACATTG------ACAAATGTGAGGAATGTGCTA---AAAATCCTTAATTTCC
s caeSp111.Scaffold582    306436 302 +   484378 GGAGCACCAAACACTGCCTTC-----CATCCTTTTGTGATGACCTCATTTCCTCACTTTTACTTTTCATTGCAACATTTTACACTTTACATGCCtcgctttttgaaaacatattttctgattcaataCACGcgaataattttattttctcggGT-----GAACACCtagttttctttatttctttttattagCGGTAAAGTAAAAGTAACTAAGCGATTTCCTCCTGTGAAATTGCAAAACGGAAA---------TTCCGTT--TTGAATGGGGCCGAGGCACACCTACTTGGGATATATGATACCCAAGCTCATCAGTTTTC
i caeSp111.Scaffold582  C 0 I 176
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I
e caeRem4.Crem_Contig15   283166 916 -  1794024 I

a score=0.000000
s ce10.chrX              2766690 124 + 17718866 AATTTCTATTTTCCTTCAAAACTGACAACTTGAAAATGCATAAAATCATTAGATCATTTAATTTTTGGACGGGCCTACACTTCAGTAGTCAGCAAAATATCTTAAACAACTATTTTGGGGTGGC
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I
e caeSp111.Scaffold582    306738 176 +   484378 I
e caeRem4.Crem_Contig15   283166 916 -  1794024 I

a score=541.000000
s ce10.chrX              2766814 133 + 17718866 CAGTTTAGTTGAAAATAAAATAAAAAAAGT----------------------------------------------------TAACAGATCTTGTAGAAACTTAAAGCTTGCAATACTGTAGATTTT--AAATTAGAACAAAGAAAATAAATATTTTAAAAATGGTTTTTTTTGTAATTCAAACCTA
s caeSp111.Scaffold582    306914 180 +   484378 CGGGCAGgtagaaaagaggagaagagaggTGCGCTGTAGTAGAAATGAGAGGAATGGGGGAGGAAAGGGGTAAGCGTGCGTATAGGAAATATTATacataattaaaaattgttaatttttatgttttggaaattgggacaaataa-------atttaaaaaatgatatatGAAAGTATTCAACCGTA
i caeSp111.Scaffold582  I 176 C 0
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I
e caeRem4.Crem_Contig15   283166 916 -  1794024 I

a score=273.000000
s ce10.chrX              2766947 1 + 17718866 T
s caeRem4.Crem_Contig15   284082 1 -  1794024 t
i caeRem4.Crem_Contig15 I 916 C 0
s caeSp111.Scaffold582    307094 1 +   484378 T
i caeSp111.Scaffold582  C 0 I 100
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I

a score=857.000000
s ce10.chrX              2766948 61 + 17718866 TTTTCAATTTAAAAAGTTAA--GAAGCGTTGGGGGTTT--TTGAAGAAATTTAAAAGTAC---TTTCA
s caeRem4.Crem_Contig15   284083 68 -  1794024 tctatattttcaaaggTTAATGGAATTACCCGAATTTTATTTGAAGGAATTGACAAAAACGAATTCCA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I
e caeSp111.Scaffold582    307095 100 +   484378 I

a score=-1873.000000
s ce10.chrX              2767009 26 + 17718866 AGTTTTACTAACATTTGACCGAGTAG-
s caeRem4.Crem_Contig15   284151 27 -  1794024 AGTTCTACCTAACGAATGATCATTTGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    307195 26 +   484378 AAGACCACTCAAATTCCACTCTCTCA-
i caeSp111.Scaffold582  I 100 C 0
e caePb3.Scfld02_0       3451149 1068 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I

a score=502.000000
s ce10.chrX              2767035 7 + 17718866 ACACTGA
s caeRem4.Crem_Contig15   284178 7 -  1794024 ACTTGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    307221 7 +   484378 GCTTTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3452217 7 -  4147112 ACGCTGA
i caePb3.Scfld02_0      I 1068 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17521028 1195 - 21540570 I

a score=201780.000000
s ce10.chrX              2767042 706 + 17718866  
s cb4.chrX              17522223 745 - 21540570  
i cb4.chrX              I 1195 C 0
s caeRem4.Crem_Contig15   284185 709 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 788
s caeSp111.Scaffold582    307228 735 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3452224 714 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I

a score=1647.000000
s ce10.chrX              2767748 10 + 17718866 GTTGGTTTTT
s cb4.chrX              17522968  9 - 21540570 -ttgattttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    307963 10 +   484378 aatcaatttt
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3452938 10 -  4147112 AGTAATTCTT
i caePb3.Scfld02_0      C 0 I 1413
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e caeRem4.Crem_Contig15   284894 788 -  1794024 I

a score=857.000000
s ce10.chrX              2767758 4 + 17718866 TTTC
s cb4.chrX              17522977 4 - 21540570 tttc
i cb4.chrX              C 0 I 1254
s caeSp111.Scaffold582    307974 4 +   484378 tttt
i caeSp111.Scaffold582  I 1 C 0
e caePb3.Scfld02_0       3452948 1413 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e caeRem4.Crem_Contig15   284894 788 -  1794024 I

a score=91.000000
s ce10.chrX              2767762 1 + 17718866 A
s caeSp111.Scaffold582    307978 1 +   484378 a
i caeSp111.Scaffold582  C 0 I 719
e caePb3.Scfld02_0       3452948 1413 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17522981 1254 - 21540570 I
e caeRem4.Crem_Contig15   284894 788 -  1794024 I

a score=0.000000
s ce10.chrX              2767763 1925 + 17718866  
e caePb3.Scfld02_0       3452948 1413 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17522981 1254 - 21540570 I
e caeSp111.Scaffold582    307979  719 +   484378 I
e caeRem4.Crem_Contig15   284894  788 -  1794024 I

a score=451.000000
s ce10.chrX              2769688 6 + 17718866 CGGTTA
s caeRem4.Crem_Contig15   285682 6 -  1794024 CGGTCA
i caeRem4.Crem_Contig15 I 788 C 0
e caePb3.Scfld02_0       3452948 1413 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17522981 1254 - 21540570 I
e caeSp111.Scaffold582    307979 719 +   484378 I

a score=-799.000000
s ce10.chrX              2769694 3 + 17718866 TAT--
s caeRem4.Crem_Contig15   285688 3 -  1794024 AAT--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    308698 3 +   484378 --TGT
i caeSp111.Scaffold582  I 719 C 0
e caePb3.Scfld02_0       3452948 1413 -  4147112 I
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17522981 1254 - 21540570 I

a score=-2297.000000
s ce10.chrX              2769697 29 + 17718866 --------------TTTTCAATTCGATGCCTCCCAGTTCTATG
s caeRem4.Crem_Contig15   285691 21 -  1794024 TGCTCAGCTACcacttttcta----------------------
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    308701 16 +   484378 --------------TTTTCTATCCGAT------------TAT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3454361 16 -  4147112 --------------CTCTCCATCCGAT------------TAT-
i caePb3.Scfld02_0      I 1413 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I
e cb4.chrX              17522981 1254 - 21540570 I

a score=8471.000000
s ce10.chrX              2769726 79 + 17718866 ATTAATGAGTA-ACCAAGTCACATTGG-----CTGT----------GG-CTTTGTCACGAGATTCTGGTGGTCCTCT---GGCTATAAAAAAAG--GAAGG
s cb4.chrX              17524235 73 - 21540570 ATTAATGAATAGCTGAAGTCACATGAG-----CTCT--------------TGTGTCACAAGG-------GTGCACAC--TGGCAATAAAAAATACAGCGTC
i cb4.chrX              I 1254 C 0
s caeRem4.Crem_Contig15   285715 76 -  1794024 tttaatgAGTA-CCAAAGTCACATTGG-----TTCTCTGGGTTGGTGG-CTCTGTCACGCGG-------GTGCTTG----GGtaataaaaaaca-------
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    308717 70 +   484378 ATTAATGAATA-CCCGAGTCACATTGG-----TTCC-------AGTGGATTCAGTCACGCGG-------------CCAAGAGCAATAAAAAACC-----GG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3454377 76 -  4147112 ATTAATGAGTA-CCAAAGTCACATTGGTCTATTTTC-------AAAGG-TTCTGTCACGCGG-------GGGGCTCC---GGCAATaaaaaa-a-----GC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   579778 3328 +   720316 I

a score=185554.000000
s ce10.chrX              2769805 757 + 17718866  
s cb4.chrX              17524308 776 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   285791 776 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    308787 815 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3454453 807 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   583106 735 +   720316  
i caeJap4.Scaffold18213 I 3328 I 521

a score=27271.000000
s ce10.chrX              2770562 501 + 17718866  
s cb4.chrX              17525084 346 - 21540570  
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig15   286567 359 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    309602 338 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3455260 331 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   583841 521 +   720316 I

a score=4989.000000
s ce10.chrX              2771063 23 + 17718866 ATATCGAATCAATCACTATGCAT
s caeRem4.Crem_Contig15   286926 21 -  1794024 ATATCGAATCA--TCTTTTGCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    309940 21 +   484378 GTATCGAATCA--TCCTTCGCCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3455591 21 -  4147112 ATAGGAAATCA--TCTTTTGCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   583841 521 +   720316 I
e cb4.chrX              17525430 26 - 21540570 I

a score=-59383.000000
s ce10.chrX              2771086 193 + 17718866 AG-----TTATCGGATGTG---TTCACGTTAAGATATTTATA---TAGAATAAGTCTTTT------------------------TTTTATTATGTAAACGTGAT------------------------TTCAATT--------TTTT-TTTTCATTCTATAATTttggtttaaataatagaaattggg-------------------cccaaatgac--------------cgaataaaa---------------ttgtaa---------------aaaaaataataaaatttattaattgtttttttaatgatttttcaattt----------
s cb4.chrX              17525456 294 - 21540570 AGGCTTCCTATGTATTTtcgttttcata--------tttttc-ttcgaaattttcaattaagaCTCATTTCCATCCCTCGAGAAGTCCGTTTTATgagtctgttttttttctcggacgTTGGAAAACCCTAGGGC--------ATTC-CATAAAACGATGAATCATCCCTATTTTTGCATAAATTAAAAAAGGCAACGGCTATAAAATTCGTTCGTTTCGGCCGGGAAATGTATGTAACT---------------TTGTGAGATATAACAAggcgaaaaaaatcagaa-------tggTCATATTCTTCCTTCATTTGTGCAAACAACgtggtt
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig15   286947  89 -  1794024 AG-----TTGTCGGTTTTC---TTCACG--------CTTATCGTTCGAAATTAGTTGTTA--------------------------------------------------------------------CTAGGG---------ATTT-CCTCAAGGAATTAATC-------------------------------------------TTCATTCGAt-----------------------------------------------------------aaaaagt-------------------------------------------------tt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    309961  85 +   484378 AG-----TTATTGGTTAAA---TTCAAG--------GGTATC---GGAAATTGGTT--------------------------------------------------------------------------AGAGTT-------GTTT------------------------------------------------------------TCTGGATAAC-------------------AACT---------------TAGGAA------------------------------------------ttttg---agccttttccatt----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3455612 189 -  4147112 AG-----TTAACGATTTTC---GTCCCG--------CTTATC---GGAAATTGGTT------------------------------CTGTTTTACAATCAAGAT------------------------TCAGAATTCATCTTGGTTCACATATATCCTCTAATAGAACGTCATGTTGTACCAACG----------------------TCCAGTTATT-------------------AACTAAATTGCTGACCATAttggaaaattata--------aaaaaat-------------cgTTATTTTTTGCATAATCTTGTACACA----------
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold18213   583841 521 +   720316 I

a score=-6972.000000
s ce10.chrX              2771279 57 + 17718866 tgcaaaaactaaa-----gaaaggaacgaattaaaatgaaactcccgcagaagtgagtgacg
s cb4.chrX              17525750 45 - 21540570 ttaaaaattcgaaaattccaaaa----------------aattttcg-agaagtgGGAGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   287036 27 -  1794024 ctcaaaatctaga-----cAGAA-------------------------AGAATTGTG-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    310046 13 +   484378 -gaggaatttaag-----t-------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3455801 50 -  4147112 I
e caeJap4.Scaffold18213   583841 521 +   720316 I

a score=-77934.000000
s ce10.chrX              2771336 286 + 17718866 tcatttttttatattttcgggttatctagctaaatttatagg------------------taatttttta-----------------------------------tttttctcat----------atatttggttta--aaaccccagttgtcattttttcagacatt-------ttta------------cgtgaagaaaccttgCAAATTTATaatcaaatgtagaataaaaaataaattttttaaaccaataactttagccaaaaatattaaaaatgacgtcattaatttggaattcaattttacaattgaaaatatcattaaagagtta--------------tgaa----taattgaaaattt---tataa----------attt-------ttc-----------------acagttat
s cb4.chrX              17525795 307 - 21540570 ---TTTCCCCTAATTTTATGgctataaaaat-aattttttgtctaaTAAATCAGaactttgatatttttaataaatctgaaaatattctagAGACTTGGAAAGTTTCTTTATTCCCAattgtcagatttttgaaaga--atacTTTACTCataaatcag--aattttg-----aatttt------------cgtgaa---atc----------------------agaatatttttctCGGCCTCTAAACtat----ttt------gagaattataa------------attt---------------------aaaaagaaattagaaatta----------taattgtaaaaatatatcaaatttt-----tag----------ttttgaaaggATTTCCAAAGCGTGGAAAAATTTTGCGGT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   287063 162 -  1794024 --------------TTTATCACCACG---------TTTctgt---------------tttcacattttta----------------------------------ttctttgttct----------atttttgacaTG-----------CGATGAATCA-------TT--------TTTC------------CTTGCA------------------------------------------------TAAATTA------TG------GAGGGtcataa------------atttt---ttcc------------agaaagaaaataatgtttta----------tatttcca---------caaaattt-----tat----------attc-------tttCC---------------TCGGTGGT
i caeRem4.Crem_Contig15 C 0 I 128
s caeSp111.Scaffold582    310059 164 +   484378 -------------ttttatcgtt-------------------------------------tacttttttg-----------------------------------ttttgctcCC----------------CAAAAA-------ACACCGATGATTCAT--AGAAATG-----------------------CATGAATAAGTT----------------------AAAACAAT------GGGCTATAAACTATTCACTct------gaa---tacagaaaaaac-----atttt---ttcattttt-------------------------------------tgtttata----gATATCAAAATGTATCTAGAA----------ATTC-------TGA-------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3455851 257 -  4147112 ---------tcaattttgtaaTTAAT---------TCTAGGC------------------TACTTCTTTG---AATATGGAG----------------------ATATTGGTTCC----------------AAAAAGTGAAACCATACCTTCGATCTTT--ATACTTGGTACTAGtttttttGGGTGGtccctcgaaaaaa------------------------aaaac---------------tagactatTTTATAC------GAGTTTTATGAGCCTCcc-----gtttt---ttcctttttcttgacAGCATGGTAAAAGATGATTCATCTGCAGAAATTCTTGCA----TAAATTAAAATTTGGTTATAAAACTGAtgttattc-------ttc-------------------------
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold18213   583841 521 +   720316 I

a score=-4987.000000
s ce10.chrX              2771622 40 + 17718866 -attTCAAAAAGACTCTACTCTACGATTAAAATA--------TAATTTC
s cb4.chrX              17526105 32 - 21540570 AATTTAATGGTT---------TACGAGAAAAATA--------GTTCTTC
i cb4.chrX              I 3 I 110
s caeSp111.Scaffold582    310223 29 +   484378 -GTTTGATCCTA---------GAGATTGAAGCTG----------TTTGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3456108 48 -  4147112 -atttttccctgttttcccTCTAAAACGAAGCAAATATTccgattcttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   583841 521 +   720316 I
e caeRem4.Crem_Contig15   287225 128 -  1794024 I

a score=-1419.000000
s ce10.chrX              2771662 79 + 17718866 TGCTTTAAATTATCTCAATAGCCAATTTATTTGTATGTGTGTCCGTTACATTTTCTTTTCTCAAACTAGTATTCCACAC------------
s caeSp111.Scaffold582    310252 54 +   484378 CACTTCAAACGTTC------------TCATTTCTCACTACCCCTgcctcctcttttcttctc----------tcca---------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3456156 69 -  4147112 attttcaaacgtgc-------------catttctttttgtttctttcgcttcatttttcttca---------tccacttcacttttccgac
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold18213   583841 521 +   720316 I
e cb4.chrX              17526137 110 - 21540570 I
e caeRem4.Crem_Contig15   287225 128 -  1794024 I

a score=0.000000
s ce10.chrX              2771741 9 + 17718866 ACACAACGA
e caePb3.Scfld02_0       3456225 44 -  4147112 I
e caeJap4.Scaffold18213   583841 521 +   720316 I
e cb4.chrX              17526137 110 - 21540570 I
e caeSp111.Scaffold582    310306 0 +   484378 C
e caeRem4.Crem_Contig15   287225 128 -  1794024 I

a score=0.000000
s ce10.chrX              2771750 2 + 17718866 TT
e caePb3.Scfld02_0       3456225 44 -  4147112 I
e caeJap4.Scaffold18213   583841 521 +   720316 I
e cb4.chrX              17526137 110 - 21540570 I
e caeSp111.Scaffold582    310306 0 +   484378 C
e caeRem4.Crem_Contig15   287225 128 -  1794024 I

a score=389.000000
s ce10.chrX              2771752 8 + 17718866 CCTAACCC
s caeJap4.Scaffold18213   584362 8 +   720316 CCCAATCT
i caeJap4.Scaffold18213 I 521 C 0
e caePb3.Scfld02_0       3456225 44 -  4147112 I
e cb4.chrX              17526137 110 - 21540570 I
e caeSp111.Scaffold582    310306 0 +   484378 C
e caeRem4.Crem_Contig15   287225 128 -  1794024 I

a score=-40.000000
s ce10.chrX              2771760  7 + 17718866 CAGTGTC----------
s cb4.chrX              17526247  7 - 21540570 CAATGCC----------
i cb4.chrX              I 110 C 0
s caeRem4.Crem_Contig15   287353  7 -  1794024 cagtGTC----------
i caeRem4.Crem_Contig15 I 128 C 0
s caeSp111.Scaffold582    310306  4 +   484378 ---tgTC----------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   584370 17 +   720316 CAGTGGATTTGGGGCTC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3456225 44 -  4147112 I

a score=238221.000000
s ce10.chrX              2771767 631 + 17718866  
s cb4.chrX              17526254 750 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   287360 702 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    310310 714 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3456269 735 -  4147112  
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold18213   584387 717 +   720316  
i caeJap4.Scaffold18213 C 0 I 23

a score=5439.000000
s ce10.chrX              2772398 15 + 17718866 TTTT--GGAAAAATGCT
s cb4.chrX              17527004 11 - 21540570 ------aaaaaaaagtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   288062 17 -  1794024 ttctgaaaaaaaaagtt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    311024 15 +   484378 TTCG--GGAAAAAAGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3457004 16 -  4147112 ttcgc-aaaaaaaagtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585104 23 +   720316 I

a score=13325.000000
s ce10.chrX              2772413 46 + 17718866 AC---AAAAAAGTT------AGTGGCGGAAGTTGAACCTTTATATTT-GCAACCAG
s cb4.chrX              17527015 54 - 21540570 tgtggaaaaaaataaacccGAGTAGCGGAAGTggtagaatttttttt--ctatttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   288079 46 -  1794024 tgtgaaaaaa----------agtggcggaagttgaaccttttttttttgcaactaG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    311039 43 +   484378 AGT--AAAAA----------AGTGTCGGAAGTAGAGCGTTTTTATTT-GCAGCTAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3457020 44 -  4147112 agtg-aAAAA----------AGTGGCGAAAGTAGAGCATTTTTATTT-GCAACTAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   585127 36 +   720316 ------aaaa----------aaaagttaaagtt---cttttttattt-gaaacttG
i caeJap4.Scaffold18213 I 23 I 41

a score=-4784.000000
s ce10.chrX              2772459 34 + 17718866 CTAC---------------------GTCTCTAAAAA---------------------ATTTTTAAATTATGAGTAC
s cb4.chrX              17527069 47 - 21540570 caaC----TAAAGCAATAATTC--------CAAGAAGAAACTT--------------CTATGAACAAAATGAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   288125 62 -  1794024 CAACTTGTTAAACTAACAATTCCGAATCATCAAGAAGAACATT--------------TTTCTCCAACAATGACTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    311082 55 +   484378 CAACTTGTTGAACCAACAATACGCCATTTCTTAGaacattctc--------------ttctt----caattta---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3457064 73 -  4147112 CAGCTTGTTGAACTAACAATTCacaatttctgagaaaatattttggaacgATGAACATTCTTCTAGCAGTGAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585163 41 +   720316 I

a score=1907.000000
s ce10.chrX              2772493 28 + 17718866 TCCGCCTGGCAATTCAACAATGTGGGTA
s cb4.chrX              17527116 22 - 21540570 ------TCGAGATCGGAAACTGTAGGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   288187 28 -  1794024 TTGGCTTCTGGACCAAAAAATGTAGGTG
i caeRem4.Crem_Contig15 C 0 I 45
s caeSp111.Scaffold582    311137 16 +   484378 ------------tcCGAAAATGTATGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3457137 16 -  4147112 ------------TCCAAGAATGTAGGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   585204 22 +   720316 ----TCTGCTGGTC--AATTTGTTGGTG
i caeJap4.Scaffold18213 I 41 C 0

a score=-21468.000000
s ce10.chrX              2772521  54 + 17718866 TACAATTTGTGAACACAAAAATT---------------------TCCCGAGTA----------GAATGTTTT------------------TCATTT-----TTCTGCA
s cb4.chrX              17527138  26 - 21540570 -------TATGAGGAATAAAG---------------------------------------------------------------------CCATTCGTTA-TT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    311153  48 +   484378 ------CTTTGAGAAATAATAC----------------------------GCA----------AAATACCTC----------------AATGACTTGGAATTTTTGCA
i caeSp111.Scaffold582  C 0 I 15
s caePb3.Scfld02_0       3457153  18 -  4147112 ------C-----------------------------------------------------------------------------------TGGTTTAGGG-TTCTGCA
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   585226 105 +   720316 AAAAGTTTTCGTGCaaaaaaaGTGAGtgaaagcaacaaaaaaaattgctagtACATTTTTCATAAACGTCTTATTCTCCAGTGACTATACTTActcat---ttttgca
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   288215  45 -  1794024 I

a score=43969.000000
s ce10.chrX              2772575 107 + 17718866 -------------------------CATTTTATTACGTAACT----------TCAATTTCACATTTATTTGCACAAGCCTGATCCGTAGAAGGAGC-AGTGAGCCTGA----AAAATGAGAGT----G-ATTGACAGAAA----GATAG--ATTGGTT
s cb4.chrX              17527164 118 - 21540570 ---------------------------TTTTATTAC--AACTGCATTTGGCCTCATTCGTGCAGTTATTTGCACAAACGTGATCCGTAAATGGGGACATTGAGGCAGG--AAAGGAGGAAAAA----A-GGGATAGGACA----TAAAGCTGTTGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   288260 118 -  1794024 -------------------------CATTTTATTAC--AACTCCCTTT----TCATTCTTGCATTTATTTGCACAAACGTGATCCGTAAATGGGG--ATTGAggcaga--aaaaaatgagaag----g-agagtgagagagtgggATAGCTATTGGAT
i caeRem4.Crem_Contig15 I 45 C 0
s caeSp111.Scaffold582    311216 114 +   484378 -------------------------TGTTTTATTAC--AACCGAGTCC----TCATTCTTGCATTTATTTGCACAAACGTGATCCGTAAATGGGG--CTTGAGtcagg---aaaaatgagagagaagg-agagtgAG-------AATAGATATTGGTA
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3457178 113 -  4147112 -------------------------TGTTTTATTAC--AACTGAGTTT----TAGTCCTCGCGTTTATTTGCACAAACGTGATCCGTAAAAGGGGA-ATTGAGTCaggacaaaaaatgagaga------agaattGG-------GATAGATATTGGTA
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213   585331 132 +   720316 aatttttgcaGAGCTGCACTGCACGTATATTATTGG--CACTGGGCTC---------ATGACATTTATTTACACAACCGTGATCCAGAGAAGGGA--ATTGAGTTCTG--AAAAAGGGAGAGG----ATAGAGTGAA-------AAGAGATATTGGTT
i caeJap4.Scaffold18213 C 0 I 2213

a score=-1126.000000
s ce10.chrX              2772682 54 + 17718866 TTGAGTCGGCTCAATGCTTTGT---AC---TGAAGTTTTTTAGTATCACATTTTG-ATGAA
s cb4.chrX              17527282 54 - 21540570 GTGAGCCG-CATAACTCTATAT---AT--ATAGAACTTTCTGGTGTCGTATTTCG-AGGAA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   288378 58 -  1794024 GTGAGTCC-TATGAAGCTTACTAGCAC--GTAGAACTTTTTGGTGTCCTATTTCATATGAA
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    311330 36 +   484378 GT--------------CATTC----ACTGCTAGAACTTT-TAGTATTGGATTTCG------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3457291 41 -  4147112 GTGAGCCT-------GCTTTC----AC--ATTGAACTTT-TAGTATTGGATTTCA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585463 2213 +   720316 I

a score=0.000000
s ce10.chrX              2772736 1 + 17718866 A
e caePb3.Scfld02_0       3457332 0 -  4147112 C
e caeJap4.Scaffold18213   585463 2213 +   720316 I
e cb4.chrX              17527336 33 - 21540570 I
e caeSp111.Scaffold582    311366 0 +   484378 C
e caeRem4.Crem_Contig15   288436 17 -  1794024 I

a score=480.000000
s ce10.chrX              2772737 42 + 17718866 TGCTACTAAATGAGAATTTAATT----TTGAATATGGTAAGGTTTC
s caeSp111.Scaffold582    311366 39 +   484378 -GCTCTT---CGAAAACCAAATT---CAAAGTTATGGTAAGAGTTC
i caeSp111.Scaffold582  C 0 I 145
s caePb3.Scfld02_0       3457332 36 -  4147112 ----------CATAAACTTGGTTCAGCAAGAACATGGTGAGGTTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585463 2213 +   720316 I
e cb4.chrX              17527336 33 - 21540570 I
e caeRem4.Crem_Contig15   288436 17 -  1794024 I

a score=-6391.000000
s ce10.chrX              2772779 550 + 17718866  
s caePb3.Scfld02_0       3457368 254 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585463 2213 +   720316 I
e cb4.chrX              17527336  33 - 21540570 I
e caeSp111.Scaffold582    311405 145 +   484378 I
e caeRem4.Crem_Contig15   288436  17 -  1794024 I

a score=-3643.000000
s ce10.chrX              2773329 76 + 17718866 cactttAAAAAATATTTTCGGTGTTTCTTCTCAACTTTGTGAAATTTTTCTGAATC-----------GTGCCAAAACATACTTTCGA
s caeRem4.Crem_Contig15   288453 84 -  1794024 CGCTTCTCAAAATGgtatgagttttttttttaaattctt---agTTTCTCACAATCAATCACTGGAAATGCCaaagtttctttttcg
i caeRem4.Crem_Contig15 I 17 C 0
s caePb3.Scfld02_0       3457622 27 -  4147112 -------CAAAC---------CTCTGTCTCTAA---------AGTTTCCCAA-----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585463 2213 +   720316 I
e cb4.chrX              17527336 33 - 21540570 I
e caeSp111.Scaffold582    311405 145 +   484378 I

a score=-493.000000
s ce10.chrX              2773405 18 + 17718866 TTTTTTTCACATTTCATT
s cb4.chrX              17527369 15 - 21540570 --tctttctcattttcc-
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig15   288537  6 -  1794024 -----------ttttcc-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3457649 15 -  4147112 --CTTTTCTTATTctat-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   585463 2213 +   720316 I
e caeSp111.Scaffold582    311405 145 +   484378 I

a score=-12661.000000
s ce10.chrX              2773423 49 + 17718866 TGAATTTAAT--GCTAGAATAT-GAGAATTT--TT---------CTCAGCAAACTATTTTCAT
s cb4.chrX              17527384 44 - 21540570 ---------------aaaaaat-tatgagtt--ttttcgtggc-ttgaaaaaattttattcac
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig15   288543 48 -  1794024 ---------------aaaaagtgtATATATTGATTCTCGTTTCACTCTTCAAGTTttaatcaa
i caeRem4.Crem_Contig15 C 0 I 17
s caePb3.Scfld02_0       3457664 23 -  4147112 -----ttact--gaaaaaaaac-aaaacatt--------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   587676 44 +   720316 TGTATTTAATTGGCTccaaaat-ttggtttt--tt----------------aacTTCTTctat
i caeJap4.Scaffold18213 I 2213 C 0
e caeSp111.Scaffold582    311405 145 +   484378 I

a score=63427.000000
s ce10.chrX              2773472 299 + 17718866 TTGAAAAAAAAACGCGTTCCAAAGGAA-GTTAGTTTCCCAGACTACGGAAATTG--------------------GCAAGAAACAGAGTCATTCTTCAT-----------------------CTCCGCCGTCCGTTTCCACTTC--AACGTTACGTCT-GGCAAAAGT-GCGAACATCTTTTATTGAAAAACCTCATGAATAAATCTGAAACATGTTCATAACCGATTCTGT----------CACCTGTTGA--GACCCTCCT-------AG-----------------TTGTCGAA-------------------CAACAACCAATTACCGGCTAAACACAATTTTC-----------------------------------------------TAAAAAAG-------------GGGGTTAACGTTTGAGGCTAACAGAAATAAGTC--TATTGAC----------CAAGTAA-----
s cb4.chrX              17527452 347 - 21540570 ccaaaaaa------------aacggAACCCTGTTACCCTAGACTACGGAAATTG-----AAAG-----------AGAAACAGCAAAGTCATTCTTCACTGT---TTCCTTTCT---CCCCCTCTCTTAGTCCGTTTCCACTTCAAAACTTTACGTTTCGCCAAAAGC--CGAACATCCTTCAGC--AAAACCTTATGAATAAATCTGAAACATGTTCATAATCGATTCCGTCA-------GCACCTGTTGACGAACTCCTTTACT----ATTCCTGCCAACCACCCGTTCGGCAAA-----------AGTCAG--------------------------------------TCGCAGAGAAGTAA-----------------TTAGCAATAAACTAACAcacttttcctcttcttctgtttctctgTTCTTATTGTTAGAAAACAATTCGAATTG------------TCAGAAC-----
i cb4.chrX              I 24 I 30
s caeRem4.Crem_Contig15   288608 381 -  1794024 gtaaaaaatttt------ccaacgGAA-GTTGGTCTCCCAGACTACGGAAATTGTGTGTCATG-----------GCAAGAAACAAAGTCATTTCTCAC------------------CCCCTCCACCTCGTCCGTTTCCACTTC--AACTTTACGTTT-GCCAAAAG---CGAACATCCTTTAGTGAAAAACTTCATgaataaatctgaaacatgTTCATAATCGATTCCGT----------CACCTGTTGA--AGTCTCTTTAGA----AT-------ATCCACTCGTTCGTCAAAACGTCGAGTCGAGTCAAACCACCAAGTAATTACCAACTGACTacat-tttc-cttcttccgaaAACTAAGAAAACACTTTATTTGTTCGACTACAAAGTAGAATAA------------ACCGTTTAGATATTGACACTAGTGCTGGTGGATT--GATTA------------TATGTAC-----
i caeRem4.Crem_Contig15 I 17 I 17
s caeSp111.Scaffold582    311550 349 +   484378 ttgaaaaacat-------tgaaagaaG-GTTGGTTTCCCAGACTACGGAAATTGTGTT-GATG-----------GCAAGAAACATAGTCATTCTTCAC------------------CT---CCCTTCCGTCCGTTTCCACTTC--AACTTTACGTTT-GCCAAAAG---CGAACATCCTTTCGTGAAAAACGTTATgaataattctgaaacatGTTCATAATCGATTCTGT----------CACCTGTTGA--AGTTCCCCTCAA----AT------------CCCTTTTGTCAAA------AGACAAGTCAA--CACCAAGTAATTACCAACTGACTACACTTTTC-CTGTTGTT--------------------------CCGCTAAGAAACTGAGAGAA-------------CACTTTATTTGTTGGTCTGAGTAGAGGAAAACG--GTTTGGCAAGTGTAGTTTAAATAA-----
i caeSp111.Scaffold582  I 145 I 31
s caePb3.Scfld02_0       3457687 250 -  4147112 --gaaaaaagtcc---TACCAACGGAA-GTTGGTTTCCCCGACTACGGAAATTGTGTT-CGTG-----------GCAAGAAACAAAGTCATTCTTCAC------------------CTTC-TCCGTCCGTCCGTTTCCACTTC--AACTTTACGTTT-GCCAAAAG---CGAACACCCTTTAgtcaaaaacttcatgaatAAATCTGAAACATGTTCATAATCGATTCCGT----------CACCTGTTGA--AGTCCCCTCCAAACATAT------------CCACCTCGTCAAA------AGTCGAGT--------------------------CAACAC-----------------------------------------------------------------------------------------------------------------------------CAAGTAA-----
i caePb3.Scfld02_0      C 0 I 130
s caeJap4.Scaffold18213   587720 336 +   720316 tcaataaaaaaac-----ctGCCGGAA-GTTGGTCTCCCAGACTACGGAAATTGTGTTCTATGCTGAATACTATGCAAGAAACAAAGTCGTTCTTCACTCCCtgtccctctctctctctctctttttcttccatttccaCTTT--AACTTTACGTTCGGCTTTCCGTTTTGAACATCTCT---TGAAAAACTTCATGAATAAATAC-AAACATGGCCATATTCGATTCTGCCACCTCACCTCACCTGTTCA--AGTC------------AT------------CCGCTATGCCACA---------------------------AATTACTAATTGACTCGTCCTTTCTccagcttt--------------------------------------tgaaaaat-------------taggtTTTATTTAGGTTCTC---------------ATTTA------------CAAGTAATGTAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-9685.000000
s ce10.chrX              2773771 22 + 17718866 -----------------AATCATTTTGCTATGCATAA---AT
s cb4.chrX              17527829 12 - 21540570 -----------------GAATG-------------TATgtat
i cb4.chrX              I 30 I 598
s caeRem4.Crem_Contig15   289006  9 -  1794024 -----------------aatta-------------aa---at
i caeRem4.Crem_Contig15 I 17 I 4
s caeSp111.Scaffold582    311930  9 +   484378 -----------------AATTA-------------TA---TT
i caeSp111.Scaffold582  I 31 C 0
s caePb3.Scfld02_0       3458067 18 -  4147112 -----------------AATTATTCT----TGGATTA---AT
i caePb3.Scfld02_0      I 130 C 0
s caeJap4.Scaffold18213   588056 25 +   720316 GAAGAGTTCGGACtactgaata-------------aa---a-
i caeJap4.Scaffold18213 C 0 C 0

a score=74510.000000
s ce10.chrX              2773793 101 + 17718866 ---AACTAATT--TTACAGGT---CTGTATCAAAATCTAACAGTCAATTTATTGAGGCTCCTGCTTTTTTCTACGATATGGACACTGATTTGAAGGATTTGAAAGTGAG
s cb4.chrX              17528439 102 - 21540570 ----GACTATT--TT-TAGGTCCACCACTTCAAAAACCAATTCTCAATTTATTGAAGCTCCCGCATTTTTCTATGATATGGATAGTGATCTCAAGGAATTAAAGGTAAg
i cb4.chrX              I 598 I 4
s caeRem4.Crem_Contig15   289019 101 -  1794024 ----gattATTCATT-CAGGT---CTACTTCAAAAACTAGCAGTCAATTTATCGAAGCTCCCGCGTTTTTCTATGATATGGATACTGATCTGAAAGATTTGAAAGTAAG
i caeRem4.Crem_Contig15 I 4 I 1
s caeSp111.Scaffold582    311939 100 +   484378 ---ATCTGAAT--TT-CAGgt---ctgtttcaaaaactaacagTCAATTTATCGAGGCTCCCGCATTTTTCTATGACATGGATACCGATCTCAAAGAATTAAAAGTAAG
i caeSp111.Scaffold582  C 0 I 34
s caePb3.Scfld02_0       3458085 101 -  4147112 ---GCATGTTT--TTACAGGT---CTGTTTCCAAAACTAACAGTCAGTTCATTGAAGCTCCCGCATTTTTCTATGACATGGACAGCGATCTCAAGGAATTAAAAGTAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   588081 101 +   720316 attttctttat--tt-caggT---TCGTGTCTAGAACAAACAGTCAGTTCATCGAGGCGCCTGCGtttttttACGATATGGACACAGATCTCAAAGAACTTAAGGTA--
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2773894 1 + 17718866 T
e caePb3.Scfld02_0       3458186 0 -  4147112 C
e caeJap4.Scaffold18213   588182 0 +   720316 C
e cb4.chrX              17528541 4 - 21540570 I
e caeSp111.Scaffold582    312039 34 +   484378 I
e caeRem4.Crem_Contig15   289120 1 -  1794024 I

a score=1401.000000
s ce10.chrX              2773895 11 + 17718866 TTAATTTTACT
s cb4.chrX              17528545 11 - 21540570 ttttaattttt
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15   289121 11 -  1794024 TTTATACTGTT
i caeRem4.Crem_Contig15 I 1 C 0
s caeJap4.Scaffold18213   588182 11 +   720316 TTAATTTTATT
i caeJap4.Scaffold18213 C 0 I 34
e caePb3.Scfld02_0       3458186  0 -  4147112 C
e caeSp111.Scaffold582    312039 34 +   484378 I

a score=-688.000000
s ce10.chrX              2773906 5 + 17718866 CGTAG--
s cb4.chrX              17528556 7 - 21540570 ttcaaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   289132 5 -  1794024 TTTAG--
i caeRem4.Crem_Contig15 C 0 I 33
e caePb3.Scfld02_0       3458186 0 -  4147112 C
e caeJap4.Scaffold18213   588193 34 +   720316 I
e caeSp111.Scaffold582    312039 34 +   484378 I

a score=549.000000
s ce10.chrX              2773911 16 + 17718866 -TAACATTTATTTTATT
s cb4.chrX              17528563 17 - 21540570 aaaacaatttctttGTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3458186  0 -  4147112 C
e caeJap4.Scaffold18213   588193 34 +   720316 I
e caeSp111.Scaffold582    312039 34 +   484378 I
e caeRem4.Crem_Contig15   289137 33 -  1794024 I

a score=0.000000
s ce10.chrX              2773927 377 + 17718866 CATTCATTCATATTGAACGCGTTACACTTGTTCCTTGTTAGTACACTCCACAGATTTTTATTTCTTGTTTGtatataattttatttttgaaaatatttttttGAAACCATTTTTAATAGAAATTGGCAATTGACAATATTTCAAAAAATAAACGGAAACTGTTTAAATTTCTAAAATTTTTGAATTAAAGTTATGGTCGAACATTTTAATAAATTTATTTCCTGACAAAATGCCCTTTTTTTTTAGCTCAAACTTCCACGTTTTAGTAATGCCTTAAAACAATAATCGGTCGCACAAACTATGAAAAAATCATGTCAAAATTAACCTTTTTTTCCAATTTTCAAAAAATAATTTTGTTTGAAACTTACCGAAATCAA
e caePb3.Scfld02_0       3458186   0 -  4147112 C
e caeJap4.Scaffold18213   588193  34 +   720316 I
e cb4.chrX              17528580   0 - 21540570 C
e caeSp111.Scaffold582    312039  34 +   484378 I
e caeRem4.Crem_Contig15   289137  33 -  1794024 I

a score=-637.000000
s ce10.chrX              2774304 220 + 17718866 TTGCCAAAAATGTTTGAAACTATTGGaaaatttaaatataattttcattataattttCTCTCTCTCATTTTCAATTTCACAAAAAAAAAAAATTAATGAAATCGATTGAAATTTAAAAGTTGGGTTGTTTGGAAAATTAGCTTTAAATAATAGAAAATGGCCCGTAATGGGCGAATACTTTTGTTAACTTCATAATTCATAATTTCATAATTTGTTATTC
s caePb3.Scfld02_0       3458186 145 -  4147112 ttgtaaaaaatgatgaaaagtatGAGATGTCTTAA----------CCTAGAAAcgttattttt---------------------aaaaaaatttgatttaat------gaacttgaaaatgatcttacatttcaaattc---------------aagtGTTCCATTATG----aatac--------atttcatttttcaaaa-----------aacattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   588193  34 +   720316 I
e cb4.chrX              17528580   0 - 21540570 C
e caeSp111.Scaffold582    312039  34 +   484378 I
e caeRem4.Crem_Contig15   289137  33 -  1794024 I

a score=-313.000000
s ce10.chrX              2774524 7 + 17718866 AAAAATG--
s caeRem4.Crem_Contig15   289170 7 -  1794024 aaacatt--
i caeRem4.Crem_Contig15 I 33 C 0
s caePb3.Scfld02_0       3458331 7 -  4147112 --aaatttg
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18213   588193 34 +   720316 I
e cb4.chrX              17528580 0 - 21540570 C
e caeSp111.Scaffold582    312039 34 +   484378 I

a score=953.000000
s ce10.chrX              2774531 7 + 17718866 TGTTTAC
s caeRem4.Crem_Contig15   289177 5 -  1794024 --ttttt
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    312073 7 +   484378 TGCTTTG
i caeSp111.Scaffold582  I 34 C 0
s caePb3.Scfld02_0       3458341 7 -  4147112 aattttt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213   588227 7 +   720316 tacttAC
i caeJap4.Scaffold18213 I 34 C 0
e cb4.chrX              17528580 0 - 21540570 C

a score=419301.000000
s ce10.chrX              2774538 728 + 17718866  
s cb4.chrX              17528580 726 - 21540570  
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig15   289184 708 -  1794024  
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    312080 691 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3458348 714 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   588234 921 +   720316  
i caeJap4.Scaffold18213 C 0 I 3

a score=3166.000000
s ce10.chrX              2775266 40 + 17718866 TGCTACTAAATTCCTTGAGAACCCGGCACAGCCCAA------CTAC------------------------------------
s caeRem4.Crem_Contig15   289892 40 -  1794024 TGCTACTAAAATGCTTACGC-----CCTTGGCTCAG-AATTTTTAT------------------------------------
i caeRem4.Crem_Contig15 C 0 I 21
s caeSp111.Scaffold582    312771 45 +   484378 TGCTACTAAAATGCTTGAGCGTAGGCTTGAGTCCAG-AATTTTTAT------------------------------------
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3459062 46 -  4147112 TGCTACTAAAATGCTCGAGCTAAGGCTTGAGCCCAACAATTTTCAT------------------------------------
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18213   589158 77 +   720316 TGCCGCTAAAACGACCACGCTTGAGct----ctcgg-aattttttttttggtgctaGTGTAGTGCGTGCTGTTctcatacat
i caeJap4.Scaffold18213 I 3 C 0
e cb4.chrX              17529306 56 - 21540570 I

a score=158639.000000
s ce10.chrX              2775306 187 + 17718866 CAACTCATACATTTGCAATATGTC-CGGCATTCTTTTT----------------TCGCTTTTTTTTTACTTATAACACCTTTTTTAAGGAGCTCGCACCACTGAAGGATTGACAATTGTAACGTTTCCGGACTCTAGATCGACGCTTCCTTTTGAAGACTACTCACTTCTTGTGAAGTATCTTTTGCAAGTTCCTCCGTGAGTT--
s cb4.chrX              17529362 189 - 21540570 CAACTCATACATTTGCAATA--TC-ggaca--catttttttcggttcaaCACCATCacattttcttc----------catttttttaggAGCTCGCACATCTGAAGGATTGACAATCGTCACGTTTCCGGATTCGAGATCGACGCTTCCCTTTGAAGACTACTCGCTTCTTGTCAAGTATCTTTTGCAAGTTCCTCCGTAAGTT--
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig15   289953 182 -  1794024 CATCTCATACATTTCCAATA--TC-GGCCCTTCATTTTTTACAAC---------CCACATTCTTTTT----------CGCTTTTCTAGGAGCTCGCACTTCTGAAGGATTGACAATTGTCACATTCCCGGATTCAAGATCGACGCTTCCCTTTGAAGACTACTCACTTCTTGTCAAGTATCTTTTGCAAGTTCCTCCGTGAGTT--
i caeRem4.Crem_Contig15 I 21 I 35
s caeSp111.Scaffold582    312842 180 +   484378 CAACTCATACATTTGCAATA--TCTGCCCACTTTTTTGCTACT-----------CCACATTTTTCGC-----------ATTCTTCTAGGAGCTCGCACATCAGAAGGACTGACAATCGTCACGTTCCCGGATTCAAGATCGACGCTTCCCTTTGAAGACTACTCACTTCTTGTCAAGTATCTTTTGCAAGTTCCTCCGTAAGTC--
i caeSp111.Scaffold582  I 26 I 21
s caePb3.Scfld02_0       3459126 177 -  4147112 CAACTCATACATTTGCAATA--TC-gccctttcattttttaca-----------tcccttttttgtc-------------ttttctagGAGCTCGCACATCGGAAGGATTGACAATAGTCACATTCCCGGATTCAAGATCGACACTTCCCTTTGAAGACTACTCACTTCTTGTCAAGTATCTTTTGCAAGTTCCTCCGTGAGTT--
i caePb3.Scfld02_0      I 18 I 67
s caeJap4.Scaffold18213   589235 172 +   720316 acatacatacatttgCAATA--TC-----------TTATCCTA-----------GCATTTATGTTTC----------ATTCTTTTTAGGAGCCCGTACAACAGAAGGATTGACAATTGTCACGTTTCCGGATTCAAGATCGACGCTTCCCTTTGAAGATTATTCGCTTCTTGTCAAATATCTTTTACAAGTTCCTCCGTAAGTTAT
i caeJap4.Scaffold18213 C 0 C 0

a score=289.000000
s ce10.chrX              2775493 7 + 17718866 GCTTTTT
s caeJap4.Scaffold18213   589407 7 +   720316 GCTCTCC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3459303 67 -  4147112 I
e cb4.chrX              17529551 0 - 21540570 C
e caeSp111.Scaffold582    313022 21 +   484378 I
e caeRem4.Crem_Contig15   290135 35 -  1794024 I

a score=702.000000
s ce10.chrX              2775500 18 + 17718866 TTGGGGAA-AATTGTTTTA
s cb4.chrX              17529551 13 - 21540570 -----GAG-AActattttt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213   589414 19 +   720316 AGGCGGAGTAATTGGTTTA
i caeJap4.Scaffold18213 C 0 I 9
e caePb3.Scfld02_0       3459303 67 -  4147112 I
e caeSp111.Scaffold582    313022 21 +   484378 I
e caeRem4.Crem_Contig15   290135 35 -  1794024 I

a score=-2044.000000
s ce10.chrX              2775518 562 + 17718866  
s cb4.chrX              17529564 620 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3459303  67 -  4147112 I
e caeJap4.Scaffold18213   589433   9 +   720316 I
e caeSp111.Scaffold582    313022  21 +   484378 I
e caeRem4.Crem_Contig15   290135  35 -  1794024 I

a score=-2164.000000
s ce10.chrX              2776080 23 + 17718866 ---------AGATTTTTCTG----------------------AATAAAACTAAT
s cb4.chrX              17530184 54 - 21540570 gtttttatggtgtttttgtgtttttaatGGCCGATACGGTAtgtcaaattttaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    313043 24 +   484378 --------AGATTCATTCTG----------------------Gactaatttgaa
i caeSp111.Scaffold582  I 21 C 0
e caePb3.Scfld02_0       3459303 67 -  4147112 I
e caeJap4.Scaffold18213   589433  9 +   720316 I
e caeRem4.Crem_Contig15   290135 35 -  1794024 I

a score=450.000000
s ce10.chrX              2776103 2 + 17718866 AT
s cb4.chrX              17530238 2 - 21540570 tt
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold582    313067 2 +   484378 at
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   589442 2 +   720316 AT
i caeJap4.Scaffold18213 I 9 C 0
e caePb3.Scfld02_0       3459303 67 -  4147112 I
e caeRem4.Crem_Contig15   290135 35 -  1794024 I

a score=160037.000000
s ce10.chrX              2776105 397 + 17718866  
s cb4.chrX              17530247 396 - 21540570  
i cb4.chrX              I 7 I 8
s caeRem4.Crem_Contig15   290170 386 -  1794024  
i caeRem4.Crem_Contig15 I 35 I 9
s caeSp111.Scaffold582    313069 397 +   484378  
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3459370 428 -  4147112  
i caePb3.Scfld02_0      I 67 I 29
s caeJap4.Scaffold18213   589444 378 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-7647.000000
s ce10.chrX              2776502 16 + 17718866 GCTAAGG------------TATCATGCA
s cb4.chrX              17530651 14 - 21540570 GTGGAGG------------TATCATT--
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15   290565 20 -  1794024 GCCTAGGGGT------ACCTATCACT--
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582    313482  8 +   484378 -----------------GCTACAGT---
i caeSp111.Scaffold582  I 16 C 0
s caeJap4.Scaffold18213   589822 18 +   720316 --------CTTGCGCAATATATCACA--
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3459798 29 -  4147112 I

a score=36007.000000
s ce10.chrX              2776518  93 + 17718866 GAGACCGGATATC---------TTCAGTGCTC-----------CACGCTGCTTCATGTTTACAATGCGC--ACTGATTTTGATGATGGGTTG-AGTATCAC-TTTACTTCG-CAGACA
s cb4.chrX              17530665 115 - 21540570 AGGACCGGATATCTCTCAGGTTTTCTTtccgtgtgtgtgtgtgtgtgccaATTTTTGTTTACCATGCCCCTCCGAATTTTGATGCGGCGT---AATATCACTTTTACTTGCACAGACA
i cb4.chrX              C 0 I 442
s caeRem4.Crem_Contig15   290585  98 -  1794024 GAGACCGgatatc---------tttttttcatcttagTGTGCACACGC---TTTATGTTTACCATGCGCCTCCGAATTTTGAT---GGGT---AGTATCAC-TTTACTTGC-CAGACA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    313490 101 +   484378 GAGACCGgatatc------attttcttttcttaacAGTGTGCACACGC---TTCGTGTTTACCATGCGCCTCCGAATTTTGAT---GGGT---AGTATCAC-TTTACCTGC-CAGAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3459827 100 -  4147112 GAGACCGgatatc------tttttctcttcct-acAGTGTGCACACGA---ATGATGTTTACCATGCGCCTCCGAATTTTGAT---GGGT---AGTATCAC-TTTACTTGC-CAGACA
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold18213   589840  85 +   720316 CAGACCGGATATC----------TGTGTTGCCAGCTCTGTGCACACTC----------GGAGCATGGATGAGGATATCGCGAT---AGGTTGTTGTATCAC-TTTACTT---------
i caeJap4.Scaffold18213 C 0 C 0

a score=-7949.000000
s ce10.chrX              2776611 37 + 17718866 CCCCCCTCCA----CTTG-----CGGTCATTTTTT----------ATGATTGTTTT
s caeRem4.Crem_Contig15   290683 41 -  1794024 --------CAGAGTCTT-------GGtcatttatttcttcaatttatcaatggttt
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    313591 39 +   484378 --CA-AT-CA----CTt-------ggtcatttttt--ggaaagttttgatttgttt
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3459927 30 -  4147112 --CACATACA----Ctt-------ggtcatttttt-------------atttattt
i caePb3.Scfld02_0      C 0 I 349
s caeJap4.Scaffold18213   589925 41 +   720316 -------------TTCTGCATGCCGgtcatttctt-tcttttgtcaacatctttt-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17530780 442 - 21540570 I

a score=-4811.000000
s ce10.chrX              2776648 43 + 17718866 ATATGtacggtgctggccgaaaaattatatttcttttagtatt
s caeRem4.Crem_Contig15   290727 28 -  1794024 -------atacgttttc-----attcattttttgagcatt---
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    313635 40 +   484378 atttaaaaaacagtttctgaaaactcatgtatttttcatt---
i caeSp111.Scaffold582  I 5 C 0
s caeJap4.Scaffold18213   589966 31 +   720316 ---ttgtgtatgtttcttg---acttcttttgttgtt------
i caeJap4.Scaffold18213 C 0 I 29
e caePb3.Scfld02_0       3459957 349 -  4147112 I
e cb4.chrX              17530780 442 - 21540570 I

a score=-218.000000
s ce10.chrX              2776691 19 + 17718866 gtgatagttttttttttga
s caeRem4.Crem_Contig15   290755 10 -  1794024 ----acttc-----tttaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    313675 15 +   484378 ----taatcttatttttga
i caeSp111.Scaffold582  C 0 I 162
e caePb3.Scfld02_0       3459957 349 -  4147112 I
e caeJap4.Scaffold18213   589997 29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I

a score=704.000000
s ce10.chrX              2776710 34 + 17718866 aatgactataattccaaaactagaaatgctttca
s caeRem4.Crem_Contig15   290765 34 -  1794024 aaatattattattttattcctATAATCACTCTCA
i caeRem4.Crem_Contig15 C 0 I 14
e caePb3.Scfld02_0       3459957 349 -  4147112 I
e caeJap4.Scaffold18213   589997 29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I
e caeSp111.Scaffold582    313690 162 +   484378 I

a score=0.000000
s ce10.chrX              2776744 826 + 17718866  
e caePb3.Scfld02_0       3459957 349 -  4147112 I
e caeJap4.Scaffold18213   589997  29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I
e caeSp111.Scaffold582    313690 162 +   484378 I
e caeRem4.Crem_Contig15   290799  14 -  1794024 I

a score=204.000000
s ce10.chrX              2777570 9 + 17718866 TAAATAAAC
s caeSp111.Scaffold582    313852 9 +   484378 TAAAACCAC
i caeSp111.Scaffold582  I 162 C 0
e caePb3.Scfld02_0       3459957 349 -  4147112 I
e caeJap4.Scaffold18213   589997 29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I
e caeRem4.Crem_Contig15   290799 14 -  1794024 I

a score=-638.000000
s ce10.chrX              2777579 41 + 17718866 TGCAATATTGTAGGAGCTTTTTTTTTTCAAAAAAATCAATT
s caeSp111.Scaffold582    313861 30 +   484378 TGCATTCTCGTAA-----ttattttctccaaaaa------t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460306 19 -  4147112 TGTATTA----------------TTCTGGAAACA------T
i caePb3.Scfld02_0      I 349 C 0
e caeJap4.Scaffold18213   589997 29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I
e caeRem4.Crem_Contig15   290799 14 -  1794024 I

a score=4984.000000
s ce10.chrX              2777620 70 + 17718866 -TTTTAAAGGATTTCCC---TTTTTCCTGGCAGTTCATTCAATCATCATTGTTTTGC--ATTG-----ACTTGTATACATT
s caeRem4.Crem_Contig15   290813 71 -  1794024 TTTTGTAGTCCTTtcct-ttcctttct-------tttttcagt--gaaatgtTTTGCCTATTGTGTACATGTGTACATAGA
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582    313891 67 +   484378 -attcaaaacatttttt-agtttttcc-------ttattca-----cgttgttttctcttttgtgtACACTTGTACACAGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460325 67 -  4147112 -TTTAAaacgattttttaaatttttcc-------tCATTGA-----CGTTGTTTTGGCTATTGTGCACACTTGTATACAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   589997 29 +   720316 I
e cb4.chrX              17530780 442 - 21540570 I

a score=9446.000000
s ce10.chrX              2777690 29 + 17718866 AAACCATAATGACGCAAGGACCACCCTTG
s caeRem4.Crem_Contig15   290884 28 -  1794024 AAACCATAATAAGGGTGGTCCCAGTCTG-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    313958 28 +   484378 AAACCATAATGAGGGTGGTCCGTCTTTG-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460392 26 -  4147112 --ACCATAATGAGGGTGGTCCCACTCTG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   590026 24 +   720316 AGACCATAATGAGGGTGGTCTCCA-----
i caeJap4.Scaffold18213 I 29 C 0
e cb4.chrX              17530780 442 - 21540570 I

a score=65015.000000
s ce10.chrX              2777719 86 + 17718866 CTAGTACTTCCGGTGTTTTGAAACCGGA-GCTTTGTCGTCTTTGAAATCCACTTCA-TCTTTGAAGACATCCGTACATTTTCTTTTCT
s cb4.chrX              17531222 82 - 21540570 CCGGTACTTCCGGTGTTTTGAAATCGGA-GCATTTTCG--AGGAAAATCCACTTCATTTTCTGAAGACATCCGTAcattttgctc---
i cb4.chrX              I 442 C 0
s caeRem4.Crem_Contig15   290912 77 -  1794024 CCAGCACTTCCggtgttttgaaaccgga-gCGTCGTT------AAAATCCACTTCA-TTTCTGAAGACATCCgtacattttcttt---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    313986 74 +   484378 CCACTACTTCCGGTGTTTTGAAACCGGA-GCGTCGTT------GAAATCCACTTCA-TTTCTGAAGACATCCGTACATTTTA------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460418 71 -  4147112 CCAGTACTTCCGGTGTTTTGAAACCGGA-GCG---------------TCCACTTCA-TTTCTGAAGACATCCgtacattttcttcttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   590050 80 +   720316 CTGGTACTTCCGGTGTTTTGAAACCGGAGGCGTCGTT------GAAATTCACTTCA-TTT-TGAAAGCATCcgtacatttttattttt
i caeJap4.Scaffold18213 C 0 I 18

a score=2676.000000
s ce10.chrX              2777805 16 + 17718866 CGAAATTTTTTGAAAA
s cb4.chrX              17531304  9 - 21540570 ------tttt-cgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   290989 10 -  1794024 ------ttttccaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    314060 10 +   484378 ------GTTCCCGAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460489 16 -  4147112 ccatctttttccaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   590130 18 +   720316 I

a score=13999.000000
s ce10.chrX              2777821 53 + 17718866 --------TACTTTCATGCACTAAGTGCTTACTACAGC----CGTC----GAATATTTTTTATGCATGA
s cb4.chrX              17531313 50 - 21540570 --------t--ttctataCACTAAGTG-TCGTGGTGGT----GGCC----CACCAAATTTTATGCAtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   290999 51 -  1794024 --------t--tcctaTTCACTAAGTGCTTGCTTCTAT----TGCC----AACCAAATTTTATGCATGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    314070 44 +   484378 --------T--TCCTATACGCTAAGTGCTtgctct---------------tttgaatttttatgcTTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460505 48 -  4147112 --------t--ttctattcactAAGTACTTGCTCT-------ctca----cttcaatttttatgcaTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   590148 67 +   720316 tgccttcct--gcctgcctaccaatttctttcttcttttttgcgCCATGGCACTAAATTGTATGCATGA
i caeJap4.Scaffold18213 I 18 I 62

a score=1054.000000
s ce10.chrX              2777874 2 + 17718866 AA
s cb4.chrX              17531363 2 - 21540570 ca
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   291050 2 -  1794024 CA
i caeRem4.Crem_Contig15 C 0 I 11
s caeSp111.Scaffold582    314114 2 +   484378 CA
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3460553 2 -  4147112 CA
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18213   590215 62 +   720316 I

a score=-1391.000000
s ce10.chrX              2777876 59 + 17718866 TTTCTTTAA--ACATTTCGAATT-------CCGGCGGCCGCTTTTTTGTT------GGCTCCTGCAAGCCGCCA
s caeRem4.Crem_Contig15   291063 47 -  1794024 ----tttcgaaaaatttcgagag-------cCGAAAAACCTAACTTTTT-------GACTCTTTG---------
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    314123 64 +   484378 gtaattttg--aaatttcgaagcACAGCTGCcgataaacttttttctctt------gactCTCAAAGT--AATG
i caeSp111.Scaffold582  I 7 C 0
s caePb3.Scfld02_0       3460566 68 -  4147112 gtaattttg--aaatttcgaaccTCAACT-CcacgaaacttttttctatttatttcgACTCTTGCATT---TTA
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18213   590215 62 +   720316 I
e cb4.chrX              17531365 35 - 21540570 I

a score=781.000000
s ce10.chrX              2777935 18 + 17718866 -CCTTTCACCTTTCTTTTG
s cb4.chrX              17531400 15 - 21540570 ctttttacaACTTT----G
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig15   291110 14 -  1794024 -CCCTCAACCCTTT----G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    314187 14 +   484378 -CCCTCTACCCTTT----C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460634 18 -  4147112 -CCCTCTACCCTTTGCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   590215 62 +   720316 I

a score=12910.000000
s ce10.chrX              2777953 50 + 17718866 CACTTTAACCCGGTCGACCA-----CCCATCAAACTGTCAATTATTCAT--------TCAAGC-------
s cb4.chrX              17531415 46 - 21540570 C----CCTCTAACCCATGCA-----GTCATCAAACTGTCATTCATTCAT--------GCTCCA-------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig15   291124 49 -  1794024 CAC-TCATCTAGTCTGGCCA-----CCCATCAAACTGTCAATTATTCAT--------GCGCGC-------
i caeRem4.Crem_Contig15 C 0 I 91
s caeSp111.Scaffold582    314201 48 +   484378 AAC-TCATCTAGTCCATCCG------CCATCAAACTGTCATTTATTCAT--------GCGCGC-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3460652 48 -  4147112 CAC-TCATCTAGTCCATCCA------CCATCAAACTGTCATTTATTCAT--------GCGCGC-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   590277 61 +   720316 ---------CGCTATAACCATCATTCTTATTGAACTGTCAATTTTCTATCGTTTTTATCGTACCTTATGT
i caeJap4.Scaffold18213 I 62 C 0

a score=-2623.000000
s ce10.chrX              2778003 12 + 17718866 AGA-----GCAACTTTC
s cb4.chrX              17531464 16 - 21540570 -GCGCTCACAAGCGTTT
i cb4.chrX              I 3 I 3
s caeSp111.Scaffold582    314249  9 +   484378 --------TCAACTTTT
i caeSp111.Scaffold582  C 0 I 78
s caePb3.Scfld02_0       3460700  9 -  4147112 --------TCAGCTTTT
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18213   590338  8 +   720316 --------TCAGCAAA-
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   291173 91 -  1794024 I

a score=-6395.000000
s ce10.chrX              2778015 60 + 17718866 GATATAACTGGTA-------GTTGAATATCCTGGTTTTTGCACAAAATGCCCCGTGCGCCTAGAGTT
s cb4.chrX              17531483 59 - 21540570 GAGTCAACTAGTACTCGGCTGGCAAAAACTC----ATTT---CGGGTTCTGCAGTTT-TCTGATCCT
i cb4.chrX              I 3 I 2
s caePb3.Scfld02_0       3460733 60 -  4147112 ATGCCAACTAGTA----GATACTGAgtactttgaaattt---caagttgaGCAACTCATTTCATGCA
i caePb3.Scfld02_0      I 24 I 7
s caeJap4.Scaffold18213   590346 48 +   720316 -----AACTAGTA----GAAGTTTG----CCTGACTTTT---cgttttctctctctc-tctctct--
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    314258 78 +   484378 I
e caeRem4.Crem_Contig15   291173 91 -  1794024 I

a score=-60.000000
s ce10.chrX              2778075 12 + 17718866 GGCCTTCTTGCT--
s cb4.chrX              17531544  3 - 21540570 ---------GCT--
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold582    314336 12 +   484378 GTCTTTTCTGTT--
i caeSp111.Scaffold582  I 78 I 11
s caePb3.Scfld02_0       3460800 12 -  4147112 GCCTTTTCTGCT--
i caePb3.Scfld02_0      I 7 I 11
s caeJap4.Scaffold18213   590394 12 +   720316 --ctctctctctct
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   291173 91 -  1794024 I

a score=178351.000000
s ce10.chrX              2778087 348 + 17718866 -TCCTATCAA--AAAAAAAAAAAGACGCGCTTG-----TGTCGATCCCTAACGTAATTAG-----GACTCGCGTTGCTTTAGCTTAGTTTT-----GAAGACGAAAATAAATTGGAAAAAA-----------GAGAGTGCAAAAACTGAG---------A-----ATCTTTC---TTC--TTATGTTTCCTGGTTGT---------AAAAACCAGCAGCAGTTTCCTGT----------CTTTCCGCAGATGTGTTTG------GTTCTGTTTTCAA------------TACTTTTTACTTTTATGTATAATTTTTGCAGTCATTCTTCCCTGGAAAAATCTGTGTGACGTTTGTTATCAAGCCGGAAGGCGTTCTACAGCGTGCTCTTGAAGTTGGGTATCGTGGAGCAGCCGACACTTGCTCATTTCAGGT
s cb4.chrX              17531547 353 - 21540570 -TTCTAAAgacgaaggagaagaagaagcatttG-----TGCCGAT-CCTAACGTAATTAG-----GACCCGTGTT-TTGTGGCTT-----------------AGAAataaattgaaagaaaaaaaagaaggagagagTGCAAAAACTGGTACTGG----G-----ACTCTTCTATTTAATTTCT-TTAGCCATTGTC--------AAAAAAC--------GCTTTTTCT---------------CACAGATgtgcttgtttttttttctgttactATTCTCTC------TAtaacttaattttttt-acaa--ttttcagtcattctTCCCTGGAAAAGTTTGTGTGACGTTCGTCATCAAGCCGGAAGGCGTTCTTCAGCGAGCTCTCGAAGTTGGATATCGTGGAGCAGCGGATACCTGTACTTTCAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   291264 338 -  1794024 -TCCTGTGGAGAAAG--------GAAGCATTTG-----TGCCGAT-CCTAACGTAATTAG-----GGCTTGT-CG-TCGTAGCTT-----T-----AAAGACggaaataaattgaaagaaa------------agagtGCAAAAACTGGT---------G-----Gctcttc---ttcagtttt-cttctcattttccctgctgtaaaaaacattttgt-gccTTTTTT---------------CACAGATGTgcttg----tttttctgtttctataCTATCAGCttgtaaaatttaat-------------ttttcagtcattctttCCCGGGAAAATCTGTGTGACATTCGTCATCAAGCCAGAAGGCGTTCTTCAAAGAGCTCTAGAAGTTGGATATCGTGGAGCTGCAGACACCTGCACTTTCAAggt
i caeRem4.Crem_Contig15 I 91 C 0
s caeSp111.Scaffold582    314359 346 +   484378 -TTTCAAGATCTAGGGAAGAAAGGAAGCATTTG-----TGCGGAT-CCTAACGTAATTAG-----GACTCGTGCATTTGTTGCTT-----T-----AAAGAcggaaataaattgaaagagG------------GGAGTGCAAAAACTGgc---------gtttttcttcgtc---ttcagttttattttctatttgt---------aaaaac--------gttttttatttcagtttaagatttcacatacgtctttg----tttttctgtttctg-------------caagttttcATTGTCTA-------TTTTCAGTCATTCTTCCCGGGAAAAGTCTGTGTGACATTTGTCATCAAGCCGGAAGGCGTTCTTCAAAGAGCTCTCGAAGTTGGATATCGCGGAGCAGCTGATACTTGTTCATTCAAggc
i caeSp111.Scaffold582  I 11 C 0
s caePb3.Scfld02_0       3460823 341 -  4147112 -TCCTGaggtc---gaaaaaaaagaagaatttg-----tgCTGAT-CCTAACGTAATTAG-----GACTTGTGTG-TTGTTGCTT-----T-----AAAAAcggaaataaattgaaaagag------------agagtgcaAAAACTGGT---------G-----CTGCTTC---TTCAGtcttatttcttatttttctagttgtaaaaaac--------gtttttcct-----ctttccatTTCACAGATGtgcttg----tttttctgttttta-------------taaCAAttaaatccatt-------ttttcagtcattcttCCCTGGGAAAGTCTGCGTGACATTTGTCATCAAGCCGGAAGGCGTTCTTCAACGAGCTCTAGAAGTTGGATATCGTGGAGCTGCAGATACCTGCTCGTTCAAGGC
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18213   590406 359 +   720316 gacTGACAGACTGaaaaaaaGAGTATCCATCTGTCGTTTTTCCAT-CCTAACCTCATTAGAGAAAAGCTTTAGTTTGCTCTGCTT-----TTGAGAGAAGacgtaaataaattgaaaaaac------------agagTGCAAAAACGAAttttcttcccg-----cgttttt---tcctatttt-ctctctgtttttctggttgtaaaacga--------atttttgcg---------ctttttcACATATGTGTTTT----AACTTCC-CTACCA-------------Tgtgatttaaat------------ttttcagtcATTCTTTCCGGGCAAAGTTTGTGTGACGTTTGTCATCAAGCCAGAAGGCGTCCTTCAACGAGCTCTAGAAGTTGGATATCGCGGAGCTGCCGATACCTGCTCATTCAAGGT
i caeJap4.Scaffold18213 C 0 I 1216

a score=13434.000000
s ce10.chrX              2778435 132 + 17718866 TTGAAGATTTTTCAC----GTTTTCCTCATTTGAAATTATATG-------ATTTTTAATCGA---CTTAATATAT----GTACATAGTTTT-----CATGATTAACGTT---GTATAGTGCAAAGCGCATTGGAATGGAAACTA------TGCAT-GTTAATTGA
s cb4.chrX              17531900 136 - 21540570 TAGC---------------TTTCATTATGTTTC--attgtatttcaaaatttttgaaatcgc---gAAATGAT-T----GGTCgagtttttattcaaattagAGAAGAT---TTATTATGCGAAGCGCATCGGTACGGAAATTATAGGCATGTAT-GTTAATTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   291602 126 -  1794024 ttg----------------ttttattttatttc---ctGTATTCTATG--TACCGTGATCGT---GGttttat-t----gttgaaattttc-----aattag-gGAGAT---TTATTATGCGAAGCGCATTGGGATGGAAATTACGGACATGTAT-GTTAATTGA
i caeRem4.Crem_Contig15 C 0 I 242
s caeSp111.Scaffold582    314705 136 +   484378 aagtt--------------tttttcttgatttc--aaaatttgctTAG--TCATACAATGAA---ATTGGGAT-tctcaattgaaatttgc-----aATTAG-GATGATTTATTATTATGCGAAACGCAGCGGCATGGAAATTATACGCATGCAT-GTTAATTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3461164 147 -  4147112 AAGTC---CTTCcaaataatttcttttcaattt--attaTATG-TTGG--TTTTGCAATTCatatattattat-tattcataCAAATTCAC-----AATTAG-GATGAT---CTACTATGCGATGCGCATTGGGATGGAAATTATAGGCGTATACAGCTAATTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   590765 1216 +   720316 I

a score=672.000000
s ce10.chrX              2778567 17 + 17718866 AAGATA-----TAGGAAGAAAT
s cb4.chrX              17532036 22 - 21540570 GGATTGCTTTTTAGGGTGAGAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    314841 17 +   484378 GGGCTA-----TCAAGAAAGAA
i caeSp111.Scaffold582  C 0 I 240
s caePb3.Scfld02_0       3461311 17 -  4147112 GGGatg-----tggagaaaaaa
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=-593.000000
s ce10.chrX              2778584 4 + 17718866 GGAA-
s cb4.chrX              17532058 4 - 21540570 AGGG-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3461329 4 -  4147112 -gaaa
i caePb3.Scfld02_0      I 1 I 261
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=-3112.000000
s ce10.chrX              2778588 520 + 17718866  
s cb4.chrX              17532062 390 - 21540570  
i cb4.chrX              C 0 I 193
e caePb3.Scfld02_0       3461333 261 -  4147112 I
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=0.000000
s ce10.chrX              2779108 218 + 17718866 taaatggcagtcgaaaagtggcaaatactgagcttctgccactttttgaaaAATCTAAGGCACAATCCCTAAAATGTTTGAACATTTTTATTTAAAACATGAGTACCATAAAGTTCAAAGTaaaaaagttttttaatcgtcaactttcaaataaagtggcaaaaactgagattttttcaattttcaaaaaataatagaaaatttggaaatttgttctt
e caePb3.Scfld02_0       3461333 261 -  4147112 I
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e cb4.chrX              17532452 193 - 21540570 I
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=-627.000000
s ce10.chrX              2779326 139 + 17718866 gaatttttaaactatgataattggtcattgtggtgtgataggtctgtttcaaagcaactaccatactggcggtacaccacctataaATTTTTTTCTCGATGTAAGTAATCTAGGTAGGTTTTCTATAATAAAACCTCAC
s cb4.chrX              17532645  99 - 21540570 aaaatatcaaaaaattatcatttgaca------------aaatct--ttcaaattaaata----------------------ataaacattttgtcagttg--agcaattt--ttcagttctttcacagaaaatgagac
i cb4.chrX              I 193 C 0
e caePb3.Scfld02_0       3461333 261 -  4147112 I
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=-5802.000000
s ce10.chrX              2779465 205 + 17718866 ATATATTAATTTTCTGTTTGAAAGTTTGAAATTT----CACAAATAATGACAATTTCTAAAAATTAAAATATTCCACGTTATAGAAATTTTCGGTTTTGCGATT--------------------TGTGAAAAAAAAAAGTTGATTCCCAAAAAAGTTGTTTTTTCCGC------------------TCAAAATCAAAAAATTTTAACACTTTCAGACTAGTTTGATAATTATAATTCAAATGGT-----AAC
s cb4.chrX              17532744 173 - 21540570 ---------atATGGACTTAATCGTTTGGGATATGTGGggttaaagttgacggtttcaTTCAATTAAAGTG-CCTACAGTAAAA-----------TTTGCGAAC--------------------AGTTTCCAGAAGCCAAAAAATTGC---AACGTT-TGTTTTCACTATCT--------------TTAAgacca--------------------actttttcaaaattcataaaaaaaatatttttcaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3461594 242 -  4147112 ATATACTAAATTTGAGCCGAAAATTTTAGGATCT-TGCTGCAAATGTTTAGTTTCTCAAGAAATTAA-----TCTTAACTCAAACCGTTCCTAG-TTTGCAAACTTTGATGTTGCTTTggttcaaattaaaaaaaaactcagaattgC---AGAactaagttttcagaatttagccaatttcgaaattaagATCATATGATATCAACAAGTTTATTCTGTTTCATCAGTAAAATGAAGAGTGGATATAACAA
i caePb3.Scfld02_0      I 261 C 0
e caeJap4.Scaffold18213   590765 1216 +   720316 I
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=1092.000000
s ce10.chrX              2779670 2 + 17718866 AT
s cb4.chrX              17532917 2 - 21540570 at
i cb4.chrX              C 0 I 8
s caePb3.Scfld02_0       3461836 2 -  4147112 AT
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18213   591981 2 +   720316 at
i caeJap4.Scaffold18213 I 1216 C 0
e caeSp111.Scaffold582    314858 240 +   484378 I
e caeRem4.Crem_Contig15   291728 242 -  1794024 I

a score=134207.000000
s ce10.chrX              2779672 128 + 17718866 TTACAGGTGATCCAACTCGAATCGTCGGCCGAACTTCGGAAATACATTCATCACGAGTTTTTGACAATGGATGTCGGTGGCCTTATCAAGTATAACCACTTGGAATGGGTGCAGCACAGAATGGTAAG
s cb4.chrX              17532927 128 - 21540570 TCCCAGGTGATCCAACTCGAGTCATCTGCCGAACTCCGAAAATACATCCATCACGAACATTTGACAATGGACGTTGGTGGCCTCATAAAGTACAACCACTTGGAATGGGTGCAACATAGAATGGTAAG
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15   291970 128 -  1794024 TTGCAGGTCATACAACTTGAATCTTCTGCCGAACTTCGAAAGTACATCCATCATGAACATTTAACAATGGACGTCGGCGGCCTTATCAAGTATAATCATTTGGAATGGGTGCAGCATAGAATGGTAAG
i caeRem4.Crem_Contig15 I 242 C 0
s caeSp111.Scaffold582    315098 128 +   484378 TTACAGGTGATACAACTCGAGTCTTCGgcagaattgagaaaatacaTCCATCACGAACATCTGACAATGGACGTCGGCGGACTTATTAAATACAATCACCTGGAATGGGTGCAGCATAGAATGGTAAG
i caeSp111.Scaffold582  I 240 C 0
s caePb3.Scfld02_0       3461853 128 -  4147112 TTTCAGGTAATACAACTCGAGTCATCAGCAGAACTTCGGAAATACATCCATCACGAACATCTGACCATGGATGTCGGCGGACTTATCAAATACAATCACCTGGAATGGGTGCAGCATAGAATGGTAAG
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18213   591983 128 +   720316 GTTTAGGTGGTTCAACTCGAATCGTCGGCCGAACTTCGCAAGTATATCCACGGAGAGCATCTGACAATGGACGTCGGTGGTCTTATCAAGTACAATCACCTGGAATGGGTGCAGCACAGAATGGTtag
i caeJap4.Scaffold18213 C 0 I 197

a score=147498.000000
s ce10.chrX              2779800 570 + 17718866  
s cb4.chrX              17533055 644 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   292098 585 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    315226 581 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3461981 586 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   592308 702 +   720316  
i caeJap4.Scaffold18213 I 197 I 11

a score=146.000000
s ce10.chrX              2780370 7 + 17718866 GCCCCCC
s cb4.chrX              17533699 3 - 21540570 TCC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   292683 7 -  1794024 CTCCACC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    315807 7 +   484378 GCCCATC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3462567 7 -  4147112 GCCCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   593010 11 +   720316 I

a score=18444.000000
s ce10.chrX              2780377 31 + 17718866 T-AAAATCAGTTGACCATAGCAAC-------TAAG---CATT
s cb4.chrX              17533702 33 - 21540570 --AAAATCAGTTGACCATAGCAAC-------TGGGGGCCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   292690 32 -  1794024 CAAAAATCAGTTGTTATTAGCAAC-------AGAG---CTTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    315814 31 +   484378 C-AAAATCAGTTGACCATAGcaac-------aaag---agag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3462574 31 -  4147112 C-AAAATCAGTTGACCATAGCAAC-------AAAG---CATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593021 38 +   720316 -taaaatcaGTCGGCCGTGGCAACAGACAGAAGAG---CATT
i caeJap4.Scaffold18213 I 11 I 88

a score=-2307.000000
s ce10.chrX              2780408 5 + 17718866 GTGAG-
s cb4.chrX              17533735 5 - 21540570 GTGGC-
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig15   292722 5 -  1794024 GAGAG-
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    315845 6 +   484378 agagag
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3462605 6 -  4147112 GGGGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   593059 88 +   720316 I

a score=-3575.000000
s ce10.chrX              2780413 13 + 17718866 -CGGGGCCCAGCCA----
s cb4.chrX              17533747  8 - 21540570 TGGGGGTA----------
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold582    315851 16 +   484378 tggtGG--CCTCCTCTCC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3462611 18 -  4147112 TAGtcgctctttctctct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   593059 88 +   720316 I
e caeRem4.Crem_Contig15   292727 17 -  1794024 I

a score=-6493.000000
s ce10.chrX              2780426 34 + 17718866 TTTCATA--TTTTTCACCAGTGCGATCCCAA------CCT------------------------GG
s cb4.chrX              17533755 33 - 21540570 TTCCAAA--CTTCTT--C----TTATTCCTATTCCTTCCA-------------------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   292744 45 -  1794024 tttcaaaatattcttaCT----TTATTCTTAAACTATCCA--ATACTTT---------------GA
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    315867 42 +   484378 TCGCTTT--ATTTTTAct----ttattctca---tttccatacttgttt---------------ga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3462629 57 -  4147112 tcccatT--ATTCTTACT----CTAtactca---tttccatttttcttcacagTATTTTCCTTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   593059 88 +   720316 I

a score=224864.000000
s ce10.chrX              2780460 379 + 17718866 AAATGCTACGCTCATTTCAAGGATATTGGAATTCTTATTCCACTCTGGTCAACGAAAAAGACTATACAAATGTAAG------TGC------------------------------------------------AAC--TGAAAACAATCAA---GGAAATGGAAAAAGTGCCTTCTTT----------------------CTTT---------CAAGTGCAGA--TATAATTGGCGGCGCGTCTT--------CTTTCTTCAGTTTTCCACG---CTCCCAACCCTTTATTGTTTTCAGGACATTGAACGAATGAAAGCGTCTGCAACAGCCATCGCTGCTTCTCTTACCGAATTCGGAAAAACCTTGCGAGAAACTGAACTACCTAATGATGCGGACAGTACAGCACGGATATTGGAGCTTCAGACTGCCGAAAAGATGGCTATTAAGGTTAGCTTCAGGGGTGCTGCTGTTCGGCAATTT
s cb4.chrX              17533788 408 - 21540570 AAATGTTACGAACGTTTCAAGGATATTGGAATTCCTATTCCACTCTTGTCAATGAGAAAGATTATACAGCGGTGAGAGTTACTTCT----------------------GAGAATAAAAATTATAGGGGtaataaaaagtgaaaaaaagcaa---aaaaaagagaaagg-----caATCAGGAAA----------AGTATCCTTT---------CAAGTGCAGGTCTCTAATT---GACCAG-----------ACTACTTTCTTTCC----GA---AACCAAATCTTCCATTGTTTGCAGGACATTGAGCGAATGAAGGCGTCCGCTACAGCCATCGCCGCGTCTCTTActgaatttggaaaaacttTAAGAGAGACAGAACTTCCAAATGATGCAGACAGTACAGCACGAATATTGGAGTTGCAGACAGCAGAGAAAATGGCTATTAAGGTGAGTGG----ATTGATACCGTAAaatgattt
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig15   292789 384 -  1794024 AGATGTTACGAACGTTTCAAGGATATTGGAATTCCTATTCCACTCTAGTCAATGAAAAAGATTATACCGAGGTAAGTG----TCTT----------------------GAATGGAAAAAGTA---GAgcaatgaaa--tgaaaagaaacaattgggaaatgggaaatagatttcactc------------------ttttttct---------caagtgCAGG--TCTAATT---GGCACGtcgc------ttcttttttcattct----ca---aaccttttctttcattgtttGCAGGACATTGAAAGAATGAAGGCGTCCGCTACAGCAATCGCAGCTTCTCTTACTGAATTTGGAAAAACTCTGAGGGAAACTGAATTGCCAAACGATGCAGACAGTACGGCTAGGATATTGGAGCTGCAGACCGTTGAGAAAATGGCTATTAAGGTATG---------------------ataatt-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    315909 363 +   484378 aaatgttaCGAACTTTTCAAGGGTATTGGAATTCCTATTCCACTTTAATCAATGAAAGAGACTATACTGAGGTAAG------ctc-----------------------------------------atccaaaaaa--aagaaagaaacaattgagTAATGGAAAATAGATTTATTTC----------------TTTGTCCATT---------CAAGTGCAGG--TCTAATT---GGCacgtctc--------tttttttcattct----ca---aaccttttctttcattgttTGCAGGACATTGAGAGAATGAAAGCGTCAGCTACTGCAATTGCCGCTTCTCTCACTGAATTCGGGAAAACTCTACGAGAAACTGAACTTCCGAATGATGCAGACAGTACAGCAAGGATATTGGAACTTCAGACTGCTGAGAAAATGGCTATTAAAGTAAGttt-------------------------
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3462686 379 -  4147112 GAATGTTACGAACATTTCAAGGATATTGGAATTCTTATTCCACTCTTATCAATGAGAGAGATTATACCGAGGTGag------tcct----------------------gaaaaatcaatctgaaaaattgaaaaag--agaaaaaaaactattg------ggGAAATAGATATATTTC-----------------CCAACCATT---------CAAGTGCAGG--TCTAATT---GGCACTTCTCActactctctttttttattc-----ca---aaccttttctttcattgtttGCAGGACATCGAAAGAATGAAGGCGTCAGCTACAGCAATTGCTGCTTCTCTTactgaatttggaaaaactctTCGAGAAACAGAACTTCCAAATGATGCAGACAGTACTGCTCGGATACTGGAGTTACAGACAGCTGAGAAAATGGCAATCAAGGTGAG----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593147 444 +   720316 aaatgttAAGAACGTTCCAAGGATATTGGAACTCTTATTCTACACTGATCAATGAAAAAGATTACACCGAGGTGAG------TATTTGAAATACGCgcaaaaaaaaggggaaaataaatccaattatggaaaaagc--tgggaatgaatatacaaaaaaaagaatataaaTTTGTATATGCATATAAATATGTGCATGCCTTTTCCACCACACCAAAAGCATT--TTTAATT---GACTtgtctt------ttcttctttcccaCT----CAACCAACCcttttttccgttgttttcaGGATATTGAGCGAATGAAAGCGTCAGCCACTGCAATAGCAGCTTCACTTAccgaatttggaaaaacaCTCAGAGAGACGGAACTTCCTAATGATGCCGACAGTACCGCTCGAATACTTGAGTTGCagactgcagaaaaaatggCGATCAAGGTGAGTTT---------------TCACTTATTC
i caeJap4.Scaffold18213 I 88 C 0

a score=359.000000
s ce10.chrX              2780839 6 + 17718866 GAGCTT
s caeJap4.Scaffold18213   593591 6 +   720316 Gtgctt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3463065 0 -  4147112 C
e cb4.chrX              17534196 27 - 21540570 I
e caeSp111.Scaffold582    316272 6 +   484378 I
e caeRem4.Crem_Contig15   293173 0 -  1794024 C

a score=-6641.000000
s ce10.chrX              2780845 48 + 17718866 GTTcggcaattgtctgaattgccgaaattgccggaacttctataaccc
s caeRem4.Crem_Contig15   293173 14 -  1794024 ------cagttttttaaatt----------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3463065  8 -  4147112 ----TACGACTC------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593597  4 +   720316 ---------ttct-----------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17534196 27 - 21540570 I
e caeSp111.Scaffold582    316272  6 +   484378 I

a score=-14114.000000
s ce10.chrX              2780893 76 + 17718866 ggcaattgcaaaaactaccgattgccggaaCTGTAATTTTGTATACTTTTGTAAATTTAGGCGCCTAGGAATGCAT
s cb4.chrX              17534223 37 - 21540570 GGCAAAcggaaaaaata-----------------------------gttttgatatctcaatgaat----------
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig15   293187 30 -  1794024 ----------aaaagtAC--------------------------ACTTCTTTGTGTCtaatttcac----------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3463073 20 -  4147112 --------------------------------------------GTTTTTCTGAATCTGGGAGG------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593601 21 +   720316 --------------------------------------ttttatttttctttgatccac-----------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    316272  6 +   484378 I

a score=-16938.000000
s ce10.chrX              2780969 48 + 17718866 TTTATTTAGAAA--AAATACACTTTTCATTCTCAAAA------------------------TGTTGTCAAACTC
s cb4.chrX              17534260 72 - 21540570 --gttttactagttaaccactttttatATCGTTAACAGTACCAGaaaaaaatcggctcaaagttggtcAGGGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   293217 40 -  1794024 --tttcaa------aaacaCTTTTCCGTCTTCTGACA--------------------------TCCtcattttc
i caeRem4.Crem_Contig15 C 0 I 43
s caeSp111.Scaffold582    316278 44 +   484378 tttatttagcAA--AAGCA-TATTTCCttatttctaa---------------------------tttcacTTTC
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3463093 45 -  4147112 TCTTTTTCTCAT--AATCGTTGGTTCTATTTCACTCA---------------------------Attcactttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593622 37 +   720316 --tttttttgga--attcgGTCGTTTCAATATAcgca---------------------------aagc------
i caeJap4.Scaffold18213 C 0 C 0

a score=-4388.000000
s ce10.chrX              2781017 9 + 17718866 GAAG-----GTTTA-----
s cb4.chrX              17534332 9 - 21540570 AAAGCTATG----------
i cb4.chrX              C 0 I 98
s caeSp111.Scaffold582    316322 4 +   484378 AAAG---------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463138 4 -  4147112 gaaa---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593659 9 +   720316 aaaa----------aatgg
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig15   293257 43 -  1794024 I

a score=-5782.000000
s ce10.chrX              2781026 57 + 17718866 AACATTTTT-----GTTTGAAAAAAAGTTCAATCAAATACTTTAAAAAGGTGAaatttttgt
s caeSp111.Scaffold582    316326 25 +   484378 AACACTTTCACGCCGTTT-----AAcgttc--------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463142  9 -  4147112 aacattttt-----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593668 51 +   720316 aaaatgttc-----TTATTATGAAAAGTTCAATGAAGAAGAAAGCACACATAAgac------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17534341 98 - 21540570 I
e caeRem4.Crem_Contig15   293257 43 -  1794024 I

a score=-10167.000000
s ce10.chrX              2781083 80 + 17718866 aattttttttgaaatacagttttgggagttgccaaaaaggtgcggcaatcggcaatttcggcaattttgccgatttCCCG
s caeRem4.Crem_Contig15   293300 54 -  1794024 aacgttttttgcaaaatgg-----aGAACGGAGAAAA---------------CATCGCCAGATGTTTTGTCG------CG
i caeRem4.Crem_Contig15 I 43 C 0
s caeSp111.Scaffold582    316351 23 +   484378 ---atttctttc----------------------------------------ttcttccggGTTTT--------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   593719 22 +   720316 --gatttttttgaaaatgt---------------------------------ttatt-----------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3463151  0 -  4147112 C
e cb4.chrX              17534341 98 - 21540570 I

a score=-3208.000000
s ce10.chrX              2781163 29 + 17718866 AACAATATCCCACATCTGCTTCACATTCA
s cb4.chrX              17534439 29 - 21540570 aacattcactaccatttttttcacattca
i cb4.chrX              I 98 I 67
s caeRem4.Crem_Contig15   293354  1 -  1794024 ----------------------------A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    316374  5 +   484378 ------------------------ATTCA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   593741 11 +   720316 ------------------cATCTCATTAG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3463151  0 -  4147112 C

a score=-287.000000
s ce10.chrX              2781192 15 + 17718866 GTAACATAATTTCAA
s caeRem4.Crem_Contig15   293355  4 -  1794024 -----------TGAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    316379 15 +   484378 TTAATGGGATTTGAA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   593752  9 +   720316 ------AAATTTCGG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3463151  0 -  4147112 C
e cb4.chrX              17534468 67 - 21540570 I

a score=-15323.000000
s ce10.chrX              2781207 68 + 17718866 CCATTTCTTGTTTTTCAACCGCAACTTTTATTACTCAAAAATACTATCTGT-TAGAAATCTCATAACAA
s caeRem4.Crem_Contig15   293360  8 -  1794024 CAATC-----------------------------------------------TGA--------------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    316394 17 +   484378 ----------------------------------------------------CGAACGTTTTGCAAAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463151 64 -  4147112 ccatcttttgaCGTTCATCCG--GCTATTCTTCCTT---AATGGGATTTGTATGAACGTTTTACAAAat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   593761 30 +   720316 TCATTATTTGTGTTTctaatttaaatttga---------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17534468 67 - 21540570 I

a score=-23744.000000
s ce10.chrX              2781275 175 + 17718866 GTAAAAAAAAAACGTAAAAACCCGCAGCTGGCATGCAGTGTG------CTTGACAGGAA---ACCCTGCTGCGCAAATAAACGATTAGAAAAT--------------TATCGAAATT---CCATTTC-----TGTTTATTCATCTCTTTAGACAAAACAGGCCAAAAAAAATTATCTGAAGGA----GCTGTTTGTATTTATGATTAATG
s cb4.chrX              17534535 139 - 21540570 ---------GTAGAACGAAACC--CAGCTG---TTCTTTATGCCCTTGgcaaatatcga---a-----------------------aaaaaatcg------------cttcGAAAATTTGCTATTGTTTATTCAGCAATTCATTAGCTTAGCCAtaac--------gaaaatc------gaga-----atgtTTGTCATGATGATTAGTG
i cb4.chrX              I 67 I 16
s caeRem4.Crem_Contig15   293368 130 -  1794024 ------------------------------------------------GTAAATATAAA---AACGTAC-----------------AAAAAACCGGGAGGAtcagaatttcggaaatt--ccaattttccttTGTTTATTTATCTTATTagccaaaac--------aaaaattatcttgGAAATT--GATGTTTGTCCTGATGATTAGTG
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    316411 178 +   484378 -----Gtagaaacacaaaaaaa--cagcTG-----CGTTGTGACG---ATGAACAGAAA---AGCCCACC---TTGgcaaacaatcaaaaaaccggGAGACTCATAATTTcggaatt---ccatttttcgattgtttACCATTATCATTaggcaaaac--------aaaaattatctCGGGAAGTATGCTGTTTGTTTTCATGATTAGTG
i caeSp111.Scaffold582  C 0 I 24
s caePb3.Scfld02_0       3463215 176 -  4147112 -----gatggaaagaaaaaaca--cagc----------TGTGACG---GTGAACGGCTGTCCAACCAACC---TAGGCAAACAATTAAAAAACCGGGAGTCTCATATTCTCCAATGT---CCATTTCCGAATTGTTTATTCATATTATtaagcaaaac--------aaaaattagccACGGAAGTTGCTTATTTGACTTGATGATTAGTG
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18213   593791  69 +   720316 --------------------------------------------------aaacggaaa---a----------cgaaaaacgaaaacgaaaaatgaaagA----------CGGATTT---TGATTTCGATTTCGATGTCCCTTTT-----------------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0

a score=0.000000
s ce10.chrX              2781450 17 + 17718866 AGCCAGTGGCAAGCGCA
e caePb3.Scfld02_0       3463391 23 -  4147112 I
e caeJap4.Scaffold18213   593860  0 +   720316 C
e cb4.chrX              17534674 16 - 21540570 I
e caeSp111.Scaffold582    316589 24 +   484378 I
e caeRem4.Crem_Contig15   293498 17 -  1794024 I

a score=181427.000000
s ce10.chrX              2781467 167 + 17718866 AGCGCATGTAA--------TTTACAGGAAGAATTCAAAATTGCTGTCCGAAAGGGCTTCACCTTGCTCAAGTCCGTCAGGCAGCTGGATAAGAAGCCGACACCTGAACAACTATCGCCGACTCGGCTCCATAATGTGACGGCAATTGAGCGAATGCTGGTTCAATTGGGTACGTA
s cb4.chrX              17534690 175 - 21540570 AATTCATGGAATTCTTCATTTTACaggaagaattcaaaattgccGTCCGCAAAGGCTTCACCCTGCTCAAGTCCGTCCGGCAGCTGGACAAGAAGCCGACACCTGAACAACTATCGCCGACTCGGCTACATAATGTGACGGCCATTGAGCGAATGCTGGTCCAATTGGGTACGTA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig15   293515 167 -  1794024 tatctATGGAA--------TTTACaggaagaattcaaaattgctGTCCGGAAAGGGTTTACTCTACTCAAGTCCGTACGACAGCTGGACAAGAAGCCGACACCTGAACAACTATCGCCGACTCGGCTACATAATGTGACGGCTATTGAGCGCATGTTGGTCCAATTGGGTACGTA
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    316613 167 +   484378 AATTCATGgaa--------ttttcaggaagaattcaaaattgccGTCCGTAAGGGGTTTACCCTGCTCAAATCCGTCCGGCAGCTGGACAAGAAGCCGACACCTGAACAACTATCGCCGACTCGGCTCCATAATGTGACGGCCATTGAGCGAATGCTAGTCCAATTGGGTATGTA
i caeSp111.Scaffold582  I 24 C 0
s caePb3.Scfld02_0       3463414 167 -  4147112 aattcatgaaa--------tttgcaggaagaattcaaaattgccgTCCGCAAAGGCTTTACGCTGCTCAAATCCGTCCGGCAGCTGGACAAGAAGCCAACACCTGAACAACTATCCCCGACAAGGCTCCATAATGTCACTGCAATTGAGAGAATGCTGGTCCAATTGGGTACGTA
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18213   593860 152 +   720316 -----------------------CAGGAAGAATTCAAAATTGCGGTTCGAAAAGGATTCACATTGCTCAAGTCTGTCCGACAGCTGGACAAGAAGCCGACACCTGAGCAACTATCTCCTACACGACTCCATAATGTGACGGCAATTGAGCGAATGTTGGTTCAATTGGGTACGTA
i caeJap4.Scaffold18213 C 0 I 386

a score=14192.000000
s ce10.chrX              2781634 69 + 17718866 CTTAATGA--GTGATGTCATTAGTAG--ATCGT-AAAATTGAGAATAAGGAAATCGA---------GC-----------GGATGAGATAAGAGG
s cb4.chrX              17534865 70 - 21540570 CTGCCAGAATGGGCACTCATTAAAAGAAATCGTAAAAAATAAG----GGGAGAAGCG---------AG-----------AAAGAGAACAAAGGG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   293682 79 -  1794024 CCACCAAA--TGGCAGTCATTAGTAG--ATcgtaaaaaatgagaaacggGAAATGGGCTTTCATGAAG-----------AGATGAGATAAGGGG
i caeRem4.Crem_Contig15 C 0 I 319
s caeSp111.Scaffold582    316780 80 +   484378 CTGCCAAA--TGAGAGTCATTAGTAG--Atcgtaaaaaatt-gaaa-aggaaatggc-TTCTGGGTAGATGT-------AGATGAGATAAGGAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463581 88 -  4147112 TTGCCGAA--TGAGTGTCATTAGTAG--ATCgtaaaaaatgaggaa-aggaAATGGG-TTTTGGGTGGAATTGGGCACGAGATGAGATAAGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I

a score=-23413.000000
s ce10.chrX              2781703 181 + 17718866 CAAAAGTTCTGGC---------------------AAGGAAGCAAGAAAATTTTGAGGGAAAAATTACATAGTTTTTAGGAAATGTTGAGAGAAAAGTAAGGGGAATTTGAATTAAATTATGGAAAATGGACCGACAATAATTGTGGGGCAACTATAACGTTTTC---------------TCTATTTTTTAGG-----ATTAATCTTTCAGTGTTGAaaattt----------------
s cb4.chrX              17534936 184 - 21540570 -----CTTTTGGGCAACAAGATGAGATAAGGCGGAAATAAATAAGGGTAATGTGGTGGT-GAA----------TTTAGGGT---------------TGAGGGGATCTTGAATT-GATTGAGAAACATGTGAAAATTATG----------TAATTTG--GTCTAT--gaaatataata--aaaattggtttaaaagatataaatttt------ctggaagtttaaTATGTtgaagtttt
i cb4.chrX              I 1 I 195
s caeSp111.Scaffold582    316860 100 +   484378 ----------------------------------AACAAAGAAGAGGGAATAGTATGGACAGA----------TTTGG--------------------------------------------AAAATGGGATGACCGAAAT--------AAACATG--gttctc---------------tgaatttttt---------tcaatttc------aacaaaattt-ttattc---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463669 145 -  4147112 ----------------------------------GAACAGAAGCCGGCAATTCGAGAGTAGGA----------TTTAGGGA---------------AGGAGGA----TGAcc---actcaaaaaattaagatgaCCATTCTGGTG----AAATCTA--GTTTGCCTCAAAGCCAATAATTGAAGTAATTAga-----atagatttt------caaaataaat-atattc---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-7635.000000
s ce10.chrX              2781884 172 + 17718866 gaattcccg---------------cgcaaatcagtggtcttgttttgacattttctggcttaacactttggtttttctGTTCGCGAATTT--TCAATA-ATTGTTTTACTCAGA--ACTTCAAGTCGTGTTTGAAGTTACCGCGAA-Gttacggaaaaatgtcttaaaatttcacaaaa------ggcatttcgaacca
s caeSp111.Scaffold582    316960 140 +   484378 aagtttttt-------------------------cgaGTGTGC------ACT------CCTAATGAACggtctttttttattatgaatTTGATGACCATCTTGTT----TCAAACGACGCCTG---ATGTTTAAAATAC--------ATTA--GAAAGAGGTC-----AGTGCACTGAAATCTAAGACAATTCATGGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463814 158 -  4147112 aatttttcttttaatagAAAGAGTCGCAGATAAACTGATGTGCCAAAATATC------TCTACTAG------TTTTTGCAACAATTGTTtggtaaaaa-aatgtt----tcaaa--actttgg---atcTGTTCAGTTCCCCCGACGATTA--GAAAGA--------------ACAGAAGCC---AGcaattcacagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535120 195 - 21540570 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-17419.000000
s ce10.chrX              2782056  99 + 17718866 aata--tgaaaaaagggatcaattcaacaactaattgtaagccataaaatttcgaaaat-aggtcatt--------------cattt-------gcgcaggaattcaaa----------------tttatttcagccga-
s cb4.chrX              17535315 134 - 21540570 aata--tcaaaa----ttttgattccaaactttccaaaattttttgaaactacgttcattcaaaaattcagagaaattgggacattttgagattttccagAGTTCCAACacaaatttctaaacttttgacTTCCAgctac
i cb4.chrX              I 195 C 0
s caeSp111.Scaffold582    317100  37 +   484378 AATG--------------------------------------------AC--CTATCAT--GACCCCT--------------CATTT------------ACGGTTCAGCAG-----------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3463972  90 -  4147112 aatggGTAGAGA-------TGATTC------------ATTGTCATAGAAC--TGAACATTGGAGTCTt--------------tattttaacattttcaagTAGTTTCGAAG--------------TTGATTTCAACTGA-
i caePb3.Scfld02_0      C 0 I 107
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-3286.000000
s ce10.chrX              2782155 63 + 17718866 tttttcatttgattattgcaaaatgaaa-----------------cattat---------------aaaaattgataagcattttaaaatgtttt
s cb4.chrX              17535449 93 - 21540570 ttttttgaat--ttttttcaaaattcaaattatcaaatccctttccaatttcattcaacgaaaccaaaaaattctctTGAACTTCTAAATCATTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    317137 48 +   484378 --------------ATTAGAAAGTGCAA-----------------CATTTACAACTAGC----------------CCCGATCCtttaattgtttt
i caeSp111.Scaffold582  C 0 I 21
e caePb3.Scfld02_0       3464062 107 -  4147112 I
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=364.000000
s ce10.chrX              2782218 4 + 17718866 AAAT
s cb4.chrX              17535542 4 - 21540570 AAAT
i cb4.chrX              C 0 I 89
e caePb3.Scfld02_0       3464062 107 -  4147112 I
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeSp111.Scaffold582    317185 21 +   484378 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=0.000000
s ce10.chrX              2782222 17 + 17718866 ATGGCgacataaactac
e caePb3.Scfld02_0       3464062 107 -  4147112 I
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535546 89 - 21540570 I
e caeSp111.Scaffold582    317185 21 +   484378 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=486.000000
s ce10.chrX              2782239 44 + 17718866 caaaataagcaataaagggtgataatttgataaaaactgtgttc
s caeSp111.Scaffold582    317206 37 +   484378 CAAGTTTAGTCATAAATGGTA-------TATGAATGTTTTATTC
i caeSp111.Scaffold582  I 21 C 0
e caePb3.Scfld02_0       3464062 107 -  4147112 I
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535546 89 - 21540570 I
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=0.000000
s ce10.chrX              2782283 2 + 17718866 gt
e caePb3.Scfld02_0       3464062 107 -  4147112 I
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535546 89 - 21540570 I
e caeSp111.Scaffold582    317243 0 +   484378 C
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-65.000000
s ce10.chrX              2782285 3 + 17718866 tgt
s caePb3.Scfld02_0       3464169 3 -  4147112 TCC
i caePb3.Scfld02_0      I 107 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535546 89 - 21540570 I
e caeSp111.Scaffold582    317243 0 +   484378 C
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-6114.000000
s ce10.chrX              2782288 130 + 17718866 cccaaagaaaaactgatcaaacttttgat----tttagcaaaatttggctcttttttt-tcgaaattatgaagcaccataaaacaat--tttctttgaagttttttaagaactcttattctgaaattcggacctttt-------
s cb4.chrX              17535635 125 - 21540570 CGCagatgaaaattg---aagttttcgaagCTTCAGAACGAATTCTCACTTGTAATTTCTAGGCATTATTTCGAATGGTCAAAATACCGTTTCCATCAACCTT---------CATTCgtttaaaattgagatttttt-------
i cb4.chrX              I 89 I 108
s caePb3.Scfld02_0       3464172  76 -  4147112 ---------------------------------CCAAAAGAAAtgccaattgtttttt--------------------tacagAGGCCCCTTCTTTAAATAT---------------ATTTAACGATAAGAATTTCCACGCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeSp111.Scaffold582    317243   0 +   484378 C
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-962.000000
s ce10.chrX              2782418 80 + 17718866 gggtcagtttttgtct--CTTCAAATACCCAAAAATACCCAAAACCCTACCCCCTTTCAGATCTAGGACTGTTCAACCGTAT
s caePb3.Scfld02_0       3464248 41 -  4147112 TGGCCAGCCtttatctgatttttaat---------------------------------gttttatgaaggttc--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535760 108 - 21540570 I
e caeSp111.Scaffold582    317243  0 +   484378 C
e caeRem4.Crem_Contig15   293761 319 -  1794024 I

a score=-153.000000
s ce10.chrX              2782498 12 + 17718866 CTTTACATTATC
s caeRem4.Crem_Contig15   294080 12 -  1794024 CTCTACaatagt
i caeRem4.Crem_Contig15 I 319 C 0
s caePb3.Scfld02_0       3464289  1 -  4147112 -----------t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e cb4.chrX              17535760 108 - 21540570 I
e caeSp111.Scaffold582    317243  0 +   484378 C

a score=-20.000000
s ce10.chrX              2782510 4 + 17718866 TTTT-
s cb4.chrX              17535868 4 - 21540570 -TTTA
i cb4.chrX              I 108 C 0
s caeRem4.Crem_Contig15   294092 4 -  1794024 -ttta
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3464290 4 -  4147112 tttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594012 386 +   720316 I
e caeSp111.Scaffold582    317243 0 +   484378 C

a score=114017.000000
s ce10.chrX              2782514 296 + 17718866 TTCCAGAAGAGACAGAGCGAAGCTTTGATTCATTTTGGACAAAACACGAACGTCGCTTGAGATATTGCCTTGAACTTCGGCAATTTGAGGATAGTTTCAGAAAGGTTGGTT--------------------TTTCATTTTTTCTGTTTTGATTTTGTCATTCC--TCAAGTTCGCCTTTTTTTCAC---ACACACACAGAATATATT-AATCTGCCAAGGTCAAGAATCCACA---------TTTCTCTATTGAATGACAATCAATAGATCT------ATTGAAAACAATACATTCACACATAT-GCTGGA------TGAATGTTTTC----------CTCTTCGTCTTTTTTC
s cb4.chrX              17535872 284 - 21540570 TTTCAGAGGAAACAGAACGAAGCTTTGATTCATTTTGGACCAAACACGAGCGCCGATTGCGATATTGCCTTGAACTCCGCCAATTCGAGGACAGCTTCCGTAAGGTTGGTC-GTTTAGCC--------CTCTTTTACATC---TTCATCATGATTCCAAATTT--AATAATTCTTTATTCATTCCATT-CCTTCTTTAGTGTATATC-ACTTCGCCAAGGTCAAGA--AGACA---------TTTGTTAG----------GCCA------CT------TTTGAGaacat----ttagaaaattttatgaga--aaattGTCGACTTTC-----------TTCCCA----GCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   294096 318 -  1794024 tttcagaagaaacagaaCGAAGCTTTGATTCATTCTGGTGTAAGCACGAGCGTCGACTACGATATTGCCTTGAACTCCGACAATTCGAGGACAGCTTCCGAAAGGTTGGTC-GTTTTTCC----ATTTccctctcatttctcttttatcgtagattttgattcaaaaaaatgcataATTCTTTCCTCTACCTCCTCAAATGAATATC-AATCTGACAAGGTCAAGAATAGACA---------TCTCTCAGC----AAACAGTCAATAGACCT------TTTGAAAACAGTGCATTCACACATACAATAAGATGAGGTTGAATATGTTT-----------Tcctcgtgttttttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    317243 319 +   484378 TTGCAGAAGAAACGGAACGTAGctttgattctttttggaCAAAGCACGAACGCCGCCTAAGGTATTGCCTTGAACTCCGACAATTCGAGGACAGCTTCAGAAAGGTTAGCCACTTTTTGCAT--ATttccttctcatttctctcttaatgccattttcattcg--aaaaatgcatAATTCTTTCCTTC-TC------------TATC-AATCTGACAAGGTCAAGAATAGGCATCCCTCC--TCTTTTTGCCT--CCATAGTCAATAggtct------tttgaaaacagtaCATTCACACATA--ACAATAGGAGGTTGAATATcttc----atgttttctttcaaat-gtttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3464294 340 -  4147112 ttgcagaggaAACGGAACGCAGCTTTGATTCCTTTTGGACAAAACATGAACGCCGCCTGAGATATTGCCTTGAACTCCGACAATTCGAGGACAGCTTTAggaaggttagtt-ttttctgCCTCCATATGTTTTCCATCTTtcctcatttctcatttttattca--aaaaatgcataatTCTCTCCTCT-TTCCCCTCCTTTCATATCAAATCTGACAAGGTCAAGAATAGACATCCCTCTCGtttttttGCCT--CCATAGTCAATAGACCT------ATTGAAAACAGTACATTCACACATAT-ACAATAGAATGCGGAATATATTCActgatgtttttcttcatgt-taTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   594398 282 +   720316 TTTCAGAAGAGACAGAAAGAAGTTTTGATTCCTTCTGGACAAAACATGAGCGCCGATTGAAACATTGCCTTGAGCTCCGCCAGTTTGAAGACAGTTTCCGAAAGGTCAGTT-------------gcacttttttgacattttttcccctaATATTCTT-------TGAATTTCACATTTCTTCACGAT--------------------CATTTGCAAAGGTCAAGCGTAGAGA---------CCTCTTTATTT-------CTCACTTTTCCTATCATAATCGGAAAtagtacatacatacatacattcacacgattttcacttttttt------gttgcttttc----------
i caeJap4.Scaffold18213 I 386 I 1990

a score=52547.000000
s ce10.chrX              2782810 287 + 17718866 CCCCCGTTAGTACAAC--CGCAGTAGCC-----------------TGA-AAGCAAC-AAAATGTCATTCTATGTGACATTTATCATTTGAAACACGATGAGTGGTTTTT---TTCT---------GTTTTTCTTTT--------TT----CATG----------TTTTTTGTATGACAGCTCGAA-------TTGACAGTG----TTGTACACCT-----------ACCTCTTTCTAGAA-------CAGTATTTTTTCTTTTGAAT---------------------CCATTAATT--AACACTTGA----------TGTACTGTACAGGAGGTACGGAAAAAG---AACTGACC-------------TCCCTCATT---TC--TT---ATCTTTGTTTTTCATCTCCCATTGCGGGTCACTTAGCC
s cb4.chrX              17536156 351 - 21540570 TTGCGGTTAGTAGTAC--------AGCCAGGAGG---AATGATGTTGA-AAGCAACAAAAATGTCATCTTGTGTCACATATATCATTGCAAACGAGACA----TTTTCC---ATCTCTTctgagtgtttttttttcgccttgTTGTTTCACatgtctatttttttctctcatctgGCAGCTCTTACGCGTTCTTTGTATTTCATCTcgtatttcttcttttcactcACAACTTcttaat--------tagtttttttcccT-----------------TCTCTACTTCCTATCATTT--TCCATTAGC-------------ACTGT-----AGGTACGGAAAAAACCAAGTTGACC------TTCTTT-TCCATTATC---CCGGTT---ATCTCCCATTGCCATCTCTTATTGCGGGTCACTTAGCC
i cb4.chrX              C 0 I 1182
s caeRem4.Crem_Contig15   294414 363 -  1794024 ttgcggtTAGTACAACACCGTAGTAGCCGGGCGA---GAC-ACGTTGAGAAGCAACAAAAATGTCATCCCATGTcacatatatcattggaaacgAGACAAGcggttttc---ttttctctttgtggtttttttttc--------gtttcccgTGTCTA------TTTCTTATTTTGCAGCTCAAA-------TTGAcattgtttctcatttttct-----------acacGTTCTTTgtg-------tcacttttttctctgatagt-------tgtcttttgatttctttccACCTAATCCATTAGCCCAAAGTCCTTGTCCTGT-----AGGTATATAAAA---CGAAGTGACctctccgtttttc-tgtattacCTCTTCTGTT---ATCTCTCATTGTCATCTTCAATTGCGGGTCACTTAGCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    317562 288 +   484378 ttgcgGTTAGTACAGCACCGTAGTAGCCGGGAGG---AGAAACGTTGA-AAGCAACAAAAATGTCATCCTGTGTCACATATATCATTGGAAACGAgac-----gttttc---ttctct-------attcttgtttc--------tt----catgtcta------tttctcatttcgcTTCCTA-------------------------TTTTATG-----------ACACGTTCTTTGTG------------TGCTACTCTTCGGAA---------------AAAGTACATTTGATT--Accatttcc-------------------------------aaaaag---aagTGGCCTATCTTTTCTCCATCCATTACC---TTGATTTT-ATCTTATTCTGCCATCTTCTATTGCGGGTCACCTAGCC
i caeSp111.Scaffold582  C 0 I 99
s caePb3.Scfld02_0       3464634 366 -  4147112 TTGCGGTTAGTACAACACCGTAGTAGCCTGGTGGAAAAGAGACGTTGA-AAGCAACAAAAATGTCATCCTGTGTCACATATATcattggaaatgagaagagcggttttcgttttctgc-------gtttttttttt--------gt----atcgtcta------tttttcatttggctcCTCAAT-------TTGACA-------GCGTTTCTTT-----------ACAGGTTTTTTGTGTTACAATTCCTTCTTCACCTTTCGAAAGTACCCacctttttcaaatcacttttAATT--ACACTTCTCGTGAAATTC-TGTACTGT-----AGGtaacaaaaaaacctaattgaCCTCTCTTTCCACCATCCATTACC---TCAATTCTAATCTTATCCTGCCATCTTCCATTGCGGGTCACTTAGCc
i caePb3.Scfld02_0      C 0 I 104
e caeJap4.Scaffold18213   594680 1990 +   720316 I

a score=719.000000
s ce10.chrX              2783097 53 + 17718866 AGAGATATTGCCTTTTTGTTCC-TTCGACAAAACTTGCATACATTTTTTTTTGA
s caeRem4.Crem_Contig15   294777 47 -  1794024 -------TTCAGTTTTTGTCCCGTTCCTCAACATTCACATCTGTATtcatttaa
i caeRem4.Crem_Contig15 C 0 I 63
e caePb3.Scfld02_0       3465000 104 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I
e caeSp111.Scaffold582    317850 99 +   484378 I

a score=0.000000
s ce10.chrX              2783150 600 + 17718866  
e caePb3.Scfld02_0       3465000 104 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I
e caeSp111.Scaffold582    317850  99 +   484378 I
e caeRem4.Crem_Contig15   294824  63 -  1794024 I

a score=114.000000
s ce10.chrX              2783750 7 + 17718866 ACCACTG
s caeSp111.Scaffold582    317949 7 +   484378 acctttt
i caeSp111.Scaffold582  I 99 C 0
e caePb3.Scfld02_0       3465000 104 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I
e caeRem4.Crem_Contig15   294824 63 -  1794024 I

a score=29.000000
s ce10.chrX              2783757 1 + 17718866 T
s caeRem4.Crem_Contig15   294887 1 -  1794024 t
i caeRem4.Crem_Contig15 I 63 C 0
s caeSp111.Scaffold582    317956 1 +   484378 c
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3465000 104 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I

a score=33194.000000
s ce10.chrX              2783758 127 + 17718866 ACGTCCTTCATAATCAGAAAAACCTTTTGTGTTGTCATGATCTAGTTCATTGGGCGGATAGGTGTTAACAAGACAAGTGAGAAGCTGC------TGATAGCATAGCTATAATTTTGTTGACATTGTCTGGTCA
s caeRem4.Crem_Contig15   294888 122 -  1794024 acgTCCTTCATAATC--GAAGATCTATTGTGTTGTCTTGATCTAGTTTAT-----GAATAGGTGTTAACAAGACAA----GAAGCGTCACTCATTGATAGCATAGTTATCAGTATGTTGACAATGTCTGGTCA
i caeRem4.Crem_Contig15 C 0 I 25
s caeSp111.Scaffold582    317957 113 +   484378 acGTCCTTCATAACC--GAAGATCTATTGTCATGTCATGatctagttttt-----gaataggtGTTAACGAGAAAC--------CGTC-----TTGATAGCATAGTTATCAATTCATTGACAATGTCTGGTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465104  98 -  4147112 ACGGCCTTCATATTC--GAAGATCTTTTGTGTTGTCATGATCTAGTTTGT-----AAATAGGTGTTAACATGAAA--------------------GATAGCATAGTTATCA--------ACAATGTATGGTCA
i caePb3.Scfld02_0      I 104 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I

a score=423.000000
s ce10.chrX              2783885 13 + 17718866 GAGGGAATTTGTT--------------
s caeSp111.Scaffold582    318070 23 +   484378 GA---AATTTG-TAAAACAAAGAATGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465202 24 -  4147112 GA---AATTTGTTAAAACAAAGAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I
e caeRem4.Crem_Contig15   295010 25 -  1794024 I

a score=2357.000000
s ce10.chrX              2783898 209 + 17718866 GATTGGCCTT-------------------------------------GAA-------TTT--------------------------------------TATATTTCAACTACTTTTTTCCCAAC------------TTTT----TGTTTCTCCCAGCTTCTCAAGCTCTCTTCTTCAAT-------------GCTGGCCAACTTGTTTTTTTATGAACTTTGTAACAAAATGTCTG-------------------AGGAGGAACCT---------------TCCATCATTTC--TCAA-----------CAAAAAAATTGTGTGAAAC---GCGAATGCTTCGTCTCACGGCTTGCGTTAGGTATCAGGA
s caeRem4.Crem_Contig15   295035 271 -  1794024 GGTTGACCTTACTCCCTTGGCAGGAAAATTAAGAT------------GATGACTGAATTT-----------TATGAATGCTTCTtcctct--tatttttat-ttccccTAGATGTTTTTGCcacatttcaacaattttct----cgTC--TCTCgctttctcaatttctcaattttcat-----tgaagaAAAGAGGACAACTCG--TTTTTATGAACTTTGTTACAAAGTTCTCCT------------------CGGAAGAAGCTAACTC----------TTTCTCATTCC--TCAATTCTAAAATGTGAGAAGAGAAGCTTCAAACCTGATAAATGTT------------------------------
i caeRem4.Crem_Contig15 I 25 C 0
s caeSp111.Scaffold582    318093 299 +   484378 GGTCGGCctc------------taaaaatttcactCATTCGAAACAAGGAGAC----TTTTTGTAAAACTAAGCGAATGCTTCTCATAGgtgtgtttttttatttctccgcatttttccgtcat---------tttttctctgacatctttctcaaattctcaagttttcaacttctttctcaGTGCCGACGAGA-CACAACTCG-TTTTTTATGAACTTTGTAACAAAGTTTCTC-------------------AGGAAGAAACTGagta-----------ttttcattttgatcggaacttgag---agaaagagacgcaCT-AACCTGATGAATGTTCtatttcatc----------tcttttttga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465226 306 -  4147112 GGTTGACCTC------------GAAATATGTGAGT------------GAATGC----TTC-----------AACttattcttccttctctcctatttttatatttcaacattttttgtcttcat--------acttttct----catctttctcAAGTTCTCAGGTTCTCAACTTCTCT--------GGAGGAGAGGACAACTCG-TTTTTTATGAACTTTGTAACAaagttttttcccaaattctcaggagaagaggaaaaaacagaagattctaactcttttctcatttttat-gacTCTGAAG---AAAGATAGAAGCGTTGAAACTGATAAATGTTCTGTGtcatcttttttatctttttttttga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17536507 1182 - 21540570 I

a score=39573.000000
s ce10.chrX              2784107 234 + 17718866 ----------------------------------------------CAAATCATATCTCTCATCGCAATTCTATCAAGTTTTCATTTGTTTTATCGTTCCTATTTTCTCATTTTCTCACCTTTTTTCCGTA-TTTCTTTATCGCTTCTGTCACTTTGGGTAGATTTTTAAAATATAAAAAA----------AGCGAAAATCCATTCG--------CATTTCCCGAAGTTGTGTTGCCTGCTAGGATAATTTATT-GATGTTCGTCGACCAGCCTTTCCGTCAACTCCTTTTCAATTACTT
s cb4.chrX              17537689 193 - 21540570 CATATCATATCTTCTTCTC-------------------------TCTCACTCAT---------------TTTATCAAGTTTT--TCTGTTCCA--------------------------CTTTTTCACGGA-TCatcctcctctttttctcacCTGT-------------GATATGATCGa----------------caatttttctctcatcgttttttcctggaaat-ttttacGGGCTAGGATAATTTATT-AATGTTCGTCGACCA-----TCCGTCACTTACTTT--AATGACTT
i cb4.chrX              I 1182 I 457
s caeRem4.Crem_Contig15   295306 221 -  1794024 -----CAAATCTTTTTGACACCGGGCACCGACGT-TTCAACACATTGCAATCATATCTCTTTT-----GTTTATCAAGTTTT--TCTGTTCCA--------------------------CATCTCTTTGGA-TC------------CTCTCACCTGGCAt-gat-----aaatatgaaaaa----------------gatctcttttctgac--ttttttccTGAAGGT-TTTTGTCGGCTAAGATAATTTATT-GGTGTTCGACGACCAGCCTTTCCGCCACCTATTTC-AAATGACTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    318392 209 +   484378 -----------------------caCACCGacgtttttgagaagaagcaATCATATCTATATC---CCTTTTATCaagtttt--tctgttcca--------------------------cTTCTCAATGGATTT------------TTCTCACCTGAAGT-GAT-----AAATATGAGAGA----------AGC--AGATTCCATCCTCTGG---TTTTTCCCGGAGTT-TTTTGTCTACTGGGATAATTTATT-GATGTTCGTCGACCATCCTTTCCGCCACCTATTTT--AATGACTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465532 210 -  4147112 -----------------------ca----------tttgtgAAATAGCAATCAtatctatctc--tctttttatcaagtttt--tctgttcca--------------------------cTTCTTTTCGGA-TT------------TTCTCACCTACAAt-gat-----aaatatgaaaaagaaaggaaccAGA--AGATCTTTTCGTTGAC---TTTTTCCCgaagtt-ttttgttggctAGGATAATTTATTGGATGTTCGTCGACCAGCTTTTCCGCCACCTATTTC--AATGACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I

a score=3944.000000
s ce10.chrX              2784341 75 + 17718866 TAGTC-------GCTCGGACAATTCCTCCTTTTCTCTTTTTCACATTAA-TTTTGAAGGCAAACTCTGGTCACTTTGGATAGA
s caeRem4.Crem_Contig15   295527 74 -  1794024 CAGTCACAGGGGGTACTCGTACTCAtcgtttctcac-ttttcacatttatttCCCGGA--GGTTTTCGACCACTTTG------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    318601 75 +   484378 TAGTC-------CTCCTCTTTCCTCccattcctctt-cttccacattaatttttgaaaatagattttggTCACTTCAGAAATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465742 66 -  4147112 TAGTC-------GTTCTGGGCCCTTCCCT---------TTTCacattaa-ttttgaaaatagatctTGGTCACTCTGGTGAGA
i caePb3.Scfld02_0      C 0 I 174
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I

a score=-1464.000000
s ce10.chrX              2784416 19 + 17718866 AAACTCGAAAACTAAAGTT---
s caeRem4.Crem_Contig15   295601 15 -  1794024 ----TTGGAAAGTACAGTT---
i caeRem4.Crem_Contig15 C 0 I 576
s caeSp111.Scaffold582    318676 20 +   484378 --GTACTAATAGCACTGCAGAA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3465808 174 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I

a score=712.000000
s ce10.chrX              2784435 21 + 17718866 TATTC-GAAATATTCATGTGAT
s caeSp111.Scaffold582    318696 22 +   484378 CATTTGGAAAAGTTCATGTCAT
i caeSp111.Scaffold582  C 0 I 98
e caePb3.Scfld02_0       3465808 174 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=0.000000
s ce10.chrX              2784456 716 + 17718866  
e caePb3.Scfld02_0       3465808 174 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I
e caeSp111.Scaffold582    318718  98 +   484378 I
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=160.000000
s ce10.chrX              2785172 3 + 17718866 TGC
s caeSp111.Scaffold582    318816 3 +   484378 TAC
i caeSp111.Scaffold582  I 98 C 0
e caePb3.Scfld02_0       3465808 174 -  4147112 I
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=19630.000000
s ce10.chrX              2785175 245 + 17718866 TATTCGTACTAGTCATGTTTATTATTGGTCCAAGAAAAAAAAGTGAGAAAATATCACGTTACCCACTGACCCTTACACCTCAACCTGTTTCTTA------TAGTGGGCAAATCTTATT----TAATCCTTTAATCCACATGA--ACAACTTATTTGAACCTTTTT------CATACTTGCGGCCTGTTTTTGATAGCGCCTTGGATATTCTCTAGACACATAATA------TTGTTCCTCATATCAAGTTCTGATTA------GATATCACAG-------------------------------AT
s caeSp111.Scaffold582    318819 285 +   484378 TACTAGTACTACTCTTATTTATTGTCGGTTCTAAAAAACA-----GGAAGGTGTCAAATTTCGCGCTGACCCTTACCCCCCTCCCGGCTTCACACATCCTCGTTGgtcaaaatattttagaCTAGTCCCC-AGCGTAAATAA--ACAACAC-TTTAAACCTCTCAATCTATTCTGTTGTCGTTTCAGTTTCTGTAA---TCTATACAATC-----ATATATGATC----AGTTGTTCATTAGTTCTAGTTCCTGTTCCTTTTTGCCATCTCAGACACTATCAGTCctttcttgtcattttcccttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3465982 282 -  4147112 TACTAGTACTACTCTTATTTATTGTCGgttcaaaaaaaca-----ggaagGTGTCAAATTTCGAGCTGACCCTTTCCGCCCTCTCAGCTTCACACATC--CAATGGTCAAAATCTCTTAGACTAGTCCTC--GCGTAAATAAACACAACAC-TTTGAACCTTTTA------TTTGCTGTCGTTTCAGTTTCTGTAA---TCTATACATTC-----CTATATGATCGTTTAGTTGTTCATCAGTTCTAGTTCCTGTTCCATCTTGCCATGATAGTCACCATCAATCTTTTCTTGCCATTTTTCTTAT
i caePb3.Scfld02_0      I 174 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e cb4.chrX              17537882 457 - 21540570 I
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=-2616.000000
s ce10.chrX              2785420 72 + 17718866 TATCTTAC-----ACACCCTTCCCAACATTCATCG-----CA--------------------GATTTTCCTCGGAAAACCA-------AAAC--TAGAACAACCTTTTATA
s cb4.chrX              17538339 78 - 21540570 TATCTTAC--AATCTTCCCCTCCTAAGCTTTatct-----tt--------------------tgttttcttgaagaaaaat------gagataaagGACCGCTACTTAATA
i cb4.chrX              I 457 C 0
s caeSp111.Scaffold582    319104 97 +   484378 tttctcac--------tccttcatattttttctct-----ttgatatttATTAGTGAACAAGTGgttccttcaaaaaacatagaGGGTAGAT-AAAGAAGACTACTGAATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3466264 98 -  4147112 AATCTTACTTCCCTTTTctcttataatttttctccaattatTATTACTTATTGCCATAAAAAGactttcttcaagaaaaat-------------gagaggggCACTCAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   594680 1990 +   720316 I
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=-418.000000
s ce10.chrX              2785492 7 + 17718866 -GAATATT
s cb4.chrX              17538417 6 - 21540570 -AGTTAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    319201 6 +   484378 -AGTTAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3466362 6 -  4147112 -AGTTAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   596670 7 +   720316 GAGTCGT-
i caeJap4.Scaffold18213 I 1990 C 0
e caeRem4.Crem_Contig15   295616 576 -  1794024 I

a score=589845.000000
s ce10.chrX              2785499  998 + 17718866  
s cb4.chrX              17538423 1094 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   296192 1072 -  1794024  
i caeRem4.Crem_Contig15 I 576 C 0
s caeSp111.Scaffold582    319207 1050 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3466368 1082 -  4147112  
i caePb3.Scfld02_0      C 0 I 540
s caeJap4.Scaffold18213   596677 1103 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=910.000000
s ce10.chrX              2786497 1 + 17718866 T
s cb4.chrX              17539517 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   297264 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 I 338
s caeSp111.Scaffold582    320257 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   597780 1 +   720316 t
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3467450 540 -  4147112 I

a score=546.000000
s ce10.chrX              2786498 1 + 17718866 T
s cb4.chrX              17539518 1 - 21540570 T
i cb4.chrX              C 0 I 902
s caeSp111.Scaffold582    320258 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   597781 1 +   720316 t
i caeJap4.Scaffold18213 C 0 I 239
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeRem4.Crem_Contig15   297265 338 -  1794024 I

a score=293.000000
s ce10.chrX              2786499 14 + 17718866 GAATATGTATATCA
s caeSp111.Scaffold582    320259 14 +   484378 GGAACAACATATCA
i caeSp111.Scaffold582  C 0 I 130
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeJap4.Scaffold18213   597782 239 +   720316 I
e cb4.chrX              17539519 902 - 21540570 I
e caeRem4.Crem_Contig15   297265 338 -  1794024 I

a score=0.000000
s ce10.chrX              2786513 936 + 17718866  
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeJap4.Scaffold18213   597782 239 +   720316 I
e cb4.chrX              17539519 902 - 21540570 I
e caeSp111.Scaffold582    320273 130 +   484378 I
e caeRem4.Crem_Contig15   297265 338 -  1794024 I

a score=508.000000
s ce10.chrX              2787449 127 + 17718866 TTTTTTCAAATTTAAAAATTAAGTTTTTGAGAAAACATGTTGCTTTGGTGAGTGTTTTTTCTTTTTCACTATCTCAATTTAATTTTTGAGTGAACAGTAAACAAATTTAAAGCAAATGAACGAGTAA
s caeSp111.Scaffold582    320403 105 +   484378 TCTTTTTatatctaaaaataaaaat-----gaaagccta--------------gtttttggttttttggagcATCATGTTATCTTCtccatcaaaaataaacatgtatgattt---tgaaaaaggtc
i caeSp111.Scaffold582  I 130 C 0
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeJap4.Scaffold18213   597782 239 +   720316 I
e cb4.chrX              17539519 902 - 21540570 I
e caeRem4.Crem_Contig15   297265 338 -  1794024 I

a score=-436.000000
s ce10.chrX              2787576 5 + 17718866 TCTTC---
s caeRem4.Crem_Contig15   297603 5 -  1794024 ttttc---
i caeRem4.Crem_Contig15 I 338 C 0
s caeSp111.Scaffold582    320508 5 +   484378 ---tcaaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeJap4.Scaffold18213   597782 239 +   720316 I
e cb4.chrX              17539519 902 - 21540570 I

a score=-2553.000000
s ce10.chrX              2787581 17 + 17718866 -AAGATTTACTTTAAAAA------
s cb4.chrX              17540421 17 - 21540570 -aaaacacactttgaaaa------
i cb4.chrX              I 902 I 6
s caeRem4.Crem_Contig15   297608  4 -  1794024 --------------atga------
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    320513 24 +   484378 aagaattgtttttgaatgcattta
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3467450 540 -  4147112 I
e caeJap4.Scaffold18213   597782 239 +   720316 I

a score=84287.000000
s ce10.chrX              2787598 98 + 17718866 TTTTCAGATCGAGTTTCTCAAGGATACTACTTCCCCAATGAATCAGTTACTTCTACTGACAACAATCGAAACTTCAACTCTTCTTAACCTGGTAAGTT
s cb4.chrX              17540444 98 - 21540570 atttcagattgaattCCTGAAAGACACCACATCCCCAATGAATCAACTCCTGCTTCTCACAACCATTGAAACATCGACTTTGCTGAACTTGGTAAGTT
i cb4.chrX              I 6 I 60
s caeRem4.Crem_Contig15   297618 98 -  1794024 ATTACagattgagttcctaaaagaCACAACTTCCCCAATGAATCAATTATTGCTTTTGACAACTATTGAGACATCAACTCTTCTGAATTTGGTAAGTT
i caeRem4.Crem_Contig15 I 6 I 76
s caeSp111.Scaffold582    320537 98 +   484378 ttttcagatcgagTTCCTGAAAGACCCCACCATTCCAAtgaatcaattgattttgCTCACAACTATTGACACTTCAACTCTGCTTAACTTGGtaagtt
i caeSp111.Scaffold582  C 0 I 38
s caePb3.Scfld02_0       3467990 98 -  4147112 ttttcagatcgaatttttgaaagacacAACATCCCCAATGAATCAACTACTACTTCTTACAACAATTGAGACGTCTACTCTTTTGAACTTGGTAAGTT
i caePb3.Scfld02_0      I 540 C 0
s caeJap4.Scaffold18213   598021 98 +   720316 TTTTTAGATTGATTTCCTGAAAGATGCTACGTCACCAATGAATCAATTGATCCTGCTGACTACTATCGAAACTTCAACGCTATTGAAACTGGTAAGTA
i caeJap4.Scaffold18213 I 239 C 0

a score=-3742.000000
s ce10.chrX              2787696 19 + 17718866 ATGCGAAT----ATGCAAAATT-----------------A
s caePb3.Scfld02_0       3468088 37 -  4147112 G---GAACTTCAATGAAacattcttttcattattccgtaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   598119 19 +   720316 ---AGAGTATCAAGCTccagtt------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17540542 60 - 21540570 I
e caeSp111.Scaffold582    320635 38 +   484378 I
e caeRem4.Crem_Contig15   297716 76 -  1794024 I

a score=-3011.000000
s ce10.chrX              2787715 27 + 17718866 ----------------------------ATTTTTT--------------------------GCACAAACGTATTTA-------AGTTG
s caeSp111.Scaffold582    320673 38 +   484378 ----------------------------attttttctttcc--------------------gc-cGCACGAATTAA-ATTGAAAGTCG
i caeSp111.Scaffold582  I 38 C 0
s caePb3.Scfld02_0       3468125 33 -  4147112 ----------------------------atttttt--------------------------gc-tccgcgacttaagaaaaaaaatcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   598138 80 +   720316 tttttcttcacacattttcatttccgatagtttttcttttcttttttttttcttttttctttc-cgcGCGCTTTAA-------AGTCG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17540542 60 - 21540570 I
e caeRem4.Crem_Contig15   297716 76 -  1794024 I

a score=2154.000000
s ce10.chrX              2787742 6 + 17718866 GATTAG
s caeRem4.Crem_Contig15   297792 5 -  1794024 GCTTA-
i caeRem4.Crem_Contig15 I 76 C 0
s caeSp111.Scaffold582    320711 5 +   484378 GCTTA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3468158 5 -  4147112 gcttA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   598218 5 +   720316 GCTTA-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17540542 60 - 21540570 I

a score=75380.000000
s ce10.chrX              2787748 704 + 17718866  
s cb4.chrX              17540602 589 - 21540570  
i cb4.chrX              I 60 C 0
s caeRem4.Crem_Contig15   297797 696 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    320716 697 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3468163 692 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   598223 687 +   720316  
i caeJap4.Scaffold18213 C 0 I 306

a score=33102.000000
s ce10.chrX              2788452 210 + 17718866 TA---------GGC-----------------------------------CCTGGAAAAAGAATTATTCAGTGTTGTGTGTGTAT------------------AGAGCTTGAG----TCAG---------------------------------TCACTAGTCATAAACCA-TTTTGGCGTCAGTTTGAGAAAACTAGAAATGAGATGACATGCCGACAAAACACACTGTCAAATGCGGTTATGCTAATTCAATC--AAGCAATACTTCGAAGCAAAACAAAAACGCGATGGA---ATCAGTTTCCAAGACAATAT
s cb4.chrX              17541191 169 - 21540570 GG---------AAA-----------------------------------TTTGGTGAGAAATTTA-----CTGAGTGTCCGTTT------------------GGGCACCAAATAATTCAG-----------------------AAGGCC-----------TCATAAACCA-TCTAGGCGGC-------------------------------CCGACAAAACACACTGTCAGATGCGGTTATGctaattcaatcaaa---aattttcggaaaagggaaaaaagagaaaaaga----------taaaggaaagtat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   298493 231 -  1794024 -----------AAC-----------------------------------CCCGGCGATATATTT------CTGAGAGTGTGTTC------ACTTCAAAAATAGCGCTTCGAATAATTCAGTGTGAGAGTAATTTCAATTGTGAAAAGCTTGCGTCGCCAGTCATAAACCA-TGTTGGCGTCAGTTCTAG--------------------CTGCCGACAAAACACACTGTCAAATGCGGTTATGCTAATTCAATC--A---AATTCTccgaaaagaaacaaaacactAGGCGATCGTTGCGTTTGCAAGATAATAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    321413 227 +   484378 AACCCTATCTTAATGTGTTTGTCTGAGT---------------------CCGGATAGAATAATT------TAGTGTGTGTGTCTCTGTATGtgtgagagaaagaaatatgaACA--TGAG------------------------AAGCTAA-------AATCATAAACCACTGGTGGTGTCAGTTCTAG--------------------CTGTCGACAAATAACACTGTCAAATGCGGTTATGCTAATTCAATC--A---AATTCTgtgaagagaaacaaaacgCTACGCAA---ATCGGTTTCCAAGATAATAT
i caeSp111.Scaffold582  C 0 I 162
s caePb3.Scfld02_0       3468855 220 -  4147112 -----------AAAGTGTTTGTCCTAGTGTTTGCATCAAAAATGACACGTCGGTTAGAATAATT------CAGTGGAT------------------------GAGATATGAACA--CCAG------------------------AAGCTAGAGTCACTAGTCATAAACCATTTTCGGCATCAGTTCTAG--------------------CTGCCGACAAATAGCACTGTCAAATGCGGTTATGCTAATTCAATC--A---AATTCTGCGAAGAGAAACAAAACGCAACGGCA---ATCGGTTCCCAAGATAATAT
i caePb3.Scfld02_0      C 0 I 213
e caeJap4.Scaffold18213   598910 306 +   720316 I

a score=-918.000000
s ce10.chrX              2788662 24 + 17718866 CA-----------CAAGTACTTTTGATATGTTTTT
s cb4.chrX              17541360 35 - 21540570 atagagagggtggcaaaaaTAATTTATgcgttttt
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig15   298724 29 -  1794024 AT------GCTTACATATactctgtttttgttttg
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e caeSp111.Scaffold582    321640 162 +   484378 I

a score=-464.000000
s ce10.chrX              2788686 37 + 17718866 TGACAACACAAAAGGACTGGCGGTTaatgaactttgt
s caeRem4.Crem_Contig15   298753 21 -  1794024 taac----------------ttttgaatgagtttttg
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e cb4.chrX              17541395 28 - 21540570 I
e caeSp111.Scaffold582    321640 162 +   484378 I

a score=-510.000000
s ce10.chrX              2788723 73 + 17718866 ---aataaaactttttaaaaaaaatattcaaaaatgtttta------tggcggttacaaatttcgaaaaaaATGAAATTGAA
s cb4.chrX              17541423 72 - 21540570 ---aatcagtcatttttaaaggcaca--taaaTCTTTTgtaatttctagaaaatcggatttttcaaTA-----TACCGtgaa
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   298774 72 -  1794024 aatatcaaatcttttcagaatgc-----TGAAACGTTTGTA-----TTAGAGCTCAcacttttaagaaaaaattatattaaa
i caeRem4.Crem_Contig15 C 0 I 70
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e caeSp111.Scaffold582    321640 162 +   484378 I

a score=-2718.000000
s ce10.chrX              2788796 565 + 17718866  
s cb4.chrX              17541495 531 - 21540570  
i cb4.chrX              C 0 I 73
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e caeSp111.Scaffold582    321640 162 +   484378 I
e caeRem4.Crem_Contig15   298846  70 -  1794024 I

a score=0.000000
s ce10.chrX              2789361 51 + 17718866 atttaCCCTGTTGACTGTTTGTTTTTTTGTTGCAAAACGGGACAGTGTTTC
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e cb4.chrX              17542026 73 - 21540570 I
e caeSp111.Scaffold582    321640 162 +   484378 I
e caeRem4.Crem_Contig15   298846 70 -  1794024 I

a score=-642.000000
s ce10.chrX              2789412 55 + 17718866 AATAAACCCGAAA-----AATTAGAT-----------TAGTTCTTTGA----AAAAATCATCT---------------TTACCA-------GCCAGA
s cb4.chrX              17542099 97 - 21540570 aattggctcaaaattagcaATTAGGTGTCCTTATTACTGGTTTTACGATATCAAAATTCTTCCCGAAACTACTTCCGATTACCACCAATAATCCAAC
i cb4.chrX              I 73 C 0
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e caeSp111.Scaffold582    321640 162 +   484378 I
e caeRem4.Crem_Contig15   298846 70 -  1794024 I

a score=1138.000000
s ce10.chrX              2789467 8 + 17718866 TTAAAAAC
s cb4.chrX              17542196 8 - 21540570 TAGAAAAC
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold582    321802 8 +   484378 TTGCAAAC
i caeSp111.Scaffold582  I 162 C 0
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I
e caeRem4.Crem_Contig15   298846 70 -  1794024 I

a score=-3371.000000
s ce10.chrX              2789475 32 + 17718866 TGCCACAAAACTTCAGGTAGCGTTCGCGATTA-------
s cb4.chrX              17542211 28 - 21540570 TATCATATAACCT-------TTTT--CTATTTGCCAA--
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig15   298916 35 -  1794024 TGCAATATAATCTAGGGGAACGGT--GCACTCCACAA--
i caeRem4.Crem_Contig15 I 70 C 0
s caeSp111.Scaffold582    321810 33 +   484378 TTTCACAAAGCCT--AGGAACGGT--GCACTC--CAGTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3469075 213 -  4147112 I
e caeJap4.Scaffold18213   598910 306 +   720316 I

a score=21973.000000
s ce10.chrX              2789507  86 + 17718866 AATCAAA----------TAATTACTTTTTCGCAGCCCAACTG--------ATTGCACACCAAGTTTGTTTAATTCGAACA-A--AAGTGTCAAGTGATCTA----GTTCAA
s cb4.chrX              17542239 102 - 21540570 CCCCAAAGTATACATTTCAATCATTTCGAAC-------GCTGCAAACTTCACCTCTGATA-ATCAAATAATTAGAGAACA-AATAAGTGCCAAATGATCCGACtcgttcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   298951  78 -  1794024 AATCAAA----------TAATTACTTAAGAG-------ATTG--------ATTACCGATG-AGTTTGTTTTATTGGAACA-A--AAGTGTCAAGTGATCCa----gttcaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    321843  79 +   484378 AATCAAA----------TAATTACTTTTCCG-------ATTG--------ATAACCTATC-AGTTTGCATTATTGGAACAGA--AAGTGTCAAGTGATCTa----gttcaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3469288  78 -  4147112 AATCAAA----------TAATTACTCTCCCG-------ATTG--------ATAACCGATC-AGTTTACTTGGAAGAAACA-A--AAGTGTCAAGTGATCTa----gttcaa
i caePb3.Scfld02_0      I 213 C 0
e caeJap4.Scaffold18213   598910 306 +   720316 I

a score=233316.000000
s ce10.chrX              2789593 540 + 17718866  
s cb4.chrX              17542341 579 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   299029 586 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    321922 549 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3469366 567 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   599216 641 +   720316  
i caeJap4.Scaffold18213 I 306 I 237

a score=13251.000000
s ce10.chrX              2790133 74 + 17718866 TACAA------GGGGCGCCCGTA----TGCCGTCAAATAGACACAACCAGAAGGA--CCTTTCTTATGATTCATTAGCGACGGTGC
s cb4.chrX              17542920 71 - 21540570 TACAGAAGGGTGAAAAAG---------TGCCGACATGTGT------ACAGAAGGAACCTCCCCTCATGATTCATTAGGGGCGCcgc
i cb4.chrX              C 0 I 1030
s caeRem4.Crem_Contig15   299615 68 -  1794024 TACAG------GGAGAAA---------TGCCGCCGTACATGA-CAAACAGAAGGA--CCTCCCTCATGATTCATTAGCGTTGTCGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    322471 67 +   484378 AACAG------GGGGAAA---------TGTCGGCGTGCATTC-CA-ACAGAAGGA--CCTCCGCCATGATTCATTACCAACCGCGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3469933 67 -  4147112 TACag------gagaaaaacggaaaagtacCGCCTTGTAC-----------AGGA--CCCCGATCATGATTCATTACTGGTTGCGC
i caePb3.Scfld02_0      C 0 I 263
e caeJap4.Scaffold18213   599857 237 +   720316 I

a score=-1790.000000
s ce10.chrX              2790207 28 + 17718866 CAGGCTCTGTGCTTGGCCCAAAAAACGT--
s caeRem4.Crem_Contig15   299683 28 -  1794024 -CTGTCACGT-TTTTAGGTACCACAAGCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    322538 22 +   484378 ------ATGtgtttcaggaaaaaaacgT--
i caeSp111.Scaffold582  C 0 I 187
e caePb3.Scfld02_0       3470000 263 -  4147112 I
e caeJap4.Scaffold18213   599857 237 +   720316 I
e cb4.chrX              17542991 1030 - 21540570 I

a score=584.000000
s ce10.chrX              2790235 26 + 17718866 ACAAACTTTGCTTTGCAGCTGTTGAA
s caeRem4.Crem_Contig15   299711 19 -  1794024 A-------TGCTTTACAGATATTAAA
i caeRem4.Crem_Contig15 C 0 I 249
e caePb3.Scfld02_0       3470000 263 -  4147112 I
e caeJap4.Scaffold18213   599857 237 +   720316 I
e cb4.chrX              17542991 1030 - 21540570 I
e caeSp111.Scaffold582    322560 187 +   484378 I

a score=0.000000
s ce10.chrX              2790261 703 + 17718866  
e caePb3.Scfld02_0       3470000 263 -  4147112 I
e caeJap4.Scaffold18213   599857 237 +   720316 I
e cb4.chrX              17542991 1030 - 21540570 I
e caeSp111.Scaffold582    322560 187 +   484378 I
e caeRem4.Crem_Contig15   299730 249 -  1794024 I

a score=182.000000
s ce10.chrX              2790964 2 + 17718866 TT
s caeJap4.Scaffold18213   600094 2 +   720316 TT
i caeJap4.Scaffold18213 I 237 C 0
e caePb3.Scfld02_0       3470000 263 -  4147112 I
e cb4.chrX              17542991 1030 - 21540570 I
e caeSp111.Scaffold582    322560 187 +   484378 I
e caeRem4.Crem_Contig15   299730 249 -  1794024 I

a score=637.000000
s ce10.chrX              2790966 8 + 17718866 TGTTTTGA
s caePb3.Scfld02_0       3470263 8 -  4147112 tgtttccg
i caePb3.Scfld02_0      I 263 C 0
s caeJap4.Scaffold18213   600096 8 +   720316 TGCTTGAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17542991 1030 - 21540570 I
e caeSp111.Scaffold582    322560 187 +   484378 I
e caeRem4.Crem_Contig15   299730 249 -  1794024 I

a score=-1107.000000
s ce10.chrX              2790974 1 + 17718866 -A
s caeSp111.Scaffold582    322747 1 +   484378 -a
i caeSp111.Scaffold582  I 187 C 0
s caePb3.Scfld02_0       3470271 1 -  4147112 -a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   600104 1 +   720316 t-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17542991 1030 - 21540570 I
e caeRem4.Crem_Contig15   299730 249 -  1794024 I

a score=7035.000000
s ce10.chrX              2790975 26 + 17718866 ATTTGAATGCGAATTCAAAAA-----AACAA
s caeRem4.Crem_Contig15   299979 31 -  1794024 atttgaataagaaaactgaattGGACAACAA
i caeRem4.Crem_Contig15 I 249 C 0
s caeSp111.Scaffold582    322748 31 +   484378 atttgaataagaaaaatgaattggacAATAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3470272 26 -  4147112 ATTTGAATAAGCTATATGAAT-----AACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   600105 26 +   720316 atttaaatgtttatttgaaac-----agcaa
i caeJap4.Scaffold18213 C 0 I 13
e cb4.chrX              17542991 1030 - 21540570 I

a score=176613.000000
s ce10.chrX              2791001 553 + 17718866  
s cb4.chrX              17544021 430 - 21540570  
i cb4.chrX              I 1030 C 0
s caeRem4.Crem_Contig15   300010 479 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    322779 546 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3470298 511 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   600144 572 +   720316  
i caeJap4.Scaffold18213 I 13 I 1261

a score=-59300.000000
s ce10.chrX              2791554 288 + 17718866  
s cb4.chrX              17544451 238 - 21540570  
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig15   300489 370 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    323325 355 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3470809 390 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I

a score=-10966.000000
s ce10.chrX              2791842 33 + 17718866 ----------AAACGTTCGACATTTCAAACCA---AAGTCTCA--GTT--------------------
s caeRem4.Crem_Contig15   300868 33 -  1794024 -AG--AGCCTCAACA--CAACTTTC----------AATTCTCTCCGCC--------------------
i caeRem4.Crem_Contig15 I 9 I 5
s caeSp111.Scaffold582    323680 52 +   484378 TAG--AG--AGCTCA---AACCTTCCCAGGGAT--AATCATCT--AATT-----AGTTTTAATAGCAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471199 64 -  4147112 TAGTCAGTCAGTACA--taacatttcgaaatattcaattATCA--GACTGGCACAGAGCTGGTACCGT
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544689 31 - 21540570 I

a score=57142.000000
s ce10.chrX              2791875 280 + 17718866 TTTCGATTATTCGT---------------------TCTGAGTGT----ATTGTTTTTTTT-----ATTTTAAAATTTCGCAATTGACTCT-------------CAAAACAATTCGCGTTGACCCGTACC---CTGTCACCAGTTATAATGTGCCATGAA----------------AAATCGGGTGGGCGACACACAAAACATGTGGAAGTACTTTTGACCAATCTGCTGAGGGTGGATCGGGTAGCGACAAAAAGT-------CGCGGGGTCGGTTGAAAATATTCGGTTGGAGACTC-----------------TTATTG-CCCATCTGGCTT--A--CCCGCT----CAATTTTCTTCG------ATTCATTTGCATTT
s cb4.chrX              17544720 274 - 21540570 TTTTGTTTGTTTGT--------AAGAAA-------tgtaatattttcaaaagccTCAATC-----GTTTAGCACcactcttctcttttttaaaatctttttaaaaaaccgaTTTGTGCTGACCCGTACCACTCGGACACT-----CGGGGCGACGAGAG----------------------------------AGAAAACATGTGGAAGCACTTTTGACCGATCCGCAG---------------GAGACGAAAAGTGAGGGAGT---GGAGCGGTTAAAAATTTGC-GTAGGAGATCT-----TCTTAGT------------GCCATCTGCCTT--C--TCCACC----CACTTTGACTTC----TCGTTCATCtgcattt
i cb4.chrX              I 31 I 1921
s caeRem4.Crem_Contig15   300906 311 -  1794024 TTTTCTCCCTTCTC--------AAGGGAAAAGTGTTATGATTGTCTTCATCGCTTCATTT-----TATTTGCACTTTcattttctgcttc-------------aaaaacGATTCGCGATGACCCGTACC---CTGTCACCAGTTACAATGTGCCAAGAGGAGCAGTAGCCTATAGTTATTTGGGGAATGG-ACACAAAACATGTGGAAGCACTTTTGACCAATCTGC-------------------GACAAAAAGT-------C---GGGTCGGTTAAAAATTTGC-GTAGGAGAGTCGGATGGATTGGTTGGGCCGAAGGGGCCATCTGTCTT--CCTCCCACT----TATTTTAATTCT----CATTCCATCTGCATTC
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    323732 316 +   484378 TCTTCACAATTCTTTTCACacaattgagaaaatgttaTGATTGTCTTTAAAGTTCTTCCCCACATCGTTTGCATTTTCATCAtctaattc-------------aaaaacaattggCACTGACCCGTACC---CTGTCACCGGTTATAATGTGCCAAGAGCCGATGCATTACAAAAGAGTATTTTCGGTGG-ACACAAAACATGTGGAAGCACTTTTGACCAATCTGT-------------------GACAAAAAGT-------C---GGATCGGTTAAAAGTTTGC-GTAGGAGCGTC-----------------CGAATGGGCCATCTGTCTTTGCc-cccacttttcttctttgattcCATCTCATTCCATCTGCATTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471270 279 -  4147112 TTTTCAACTTTCGTTCTGT---AGTGCAATATCGTTATGATTG-----AAATCCCGTCTC-------------TTTCTATCATCTGCCTC-------------AAAAACAATTCGCGATGACCCGTACC---CTGTCACCAGTTATAATGTGAAAAGAGCAATAGC----Ctatggagt-ttttgaatga-acacAAAACATGTGGAAGCACTTTTGACCAATCTGT-------------------GACAAAAAGT-------C---GGGTCGGTTAAAAATTTGC-GTAGGAGCGTC-----------------CGATGGGCCCATCTGTCTT--CC-Cccactt---ttctttcattcc------cTCCATCTGCATTC
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I

a score=180.000000
s ce10.chrX              2792155 1 + 17718866 G
s caeRem4.Crem_Contig15   301217 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    324048 1 +   484378 A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471549 1 -  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I

a score=2292.000000
s ce10.chrX              2792156 15 + 17718866 ATTT-TCATCGTCGGT
s caeSp111.Scaffold582    324049 16 +   484378 ATTTGTTATCAGcagt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471550 16 -  4147112 ATTTGTTATCAGCGGT
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I
e caeRem4.Crem_Contig15   301218  0 -  1794024 C

a score=59.000000
s ce10.chrX              2792171 3 + 17718866 ATT
s caeSp111.Scaffold582    324065 3 +   484378 ttt
i caeSp111.Scaffold582  C 0 I 107
e caePb3.Scfld02_0       3471566 50 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I
e caeRem4.Crem_Contig15   301218 0 -  1794024 C

a score=0.000000
s ce10.chrX              2792174 275 + 17718866 TCTTTTTTGATTTAAAAATGTAATTTTTAGTTTTAAAAATCCACCTTATTCTAAATTTGTTCTCTGCTTGTTTTTGCAAACTTCGGTTGAATTTTTGAAAATTTATTGTTGAAAACAATTTTTACTCTTGTCAATTCCTAACGAAATTGCTTGAAAATATATaatttttttttcgaagtccaaaattatcatcggctaaaactgagtgattgtcacatttcgtataacaaaatttcaaaaatttttgagttgtttACaataatacttataatttt
e caePb3.Scfld02_0       3471566  50 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I
e caeSp111.Scaffold582    324068 107 +   484378 I
e caeRem4.Crem_Contig15   301218   0 -  1794024 C

a score=-52.000000
s ce10.chrX              2792449 115 + 17718866 atttattatctataaatttatttttttttttggtattttataaatttCCCTTCCGACGATACTCCACTTCAGAGATTCGCTT----ACTCCAAAATATTAAGTCAAGCAACATCCTACA
s caeRem4.Crem_Contig15   301218 109 -  1794024 ATTTGTTATC-ACaggtttgaatattttt---gaatatttctattttctctccccccccccccacacTTGTGATCTACGTTTTGAGAATCCAAGAATTCGTTTCGAA----ACCCTC--
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3471566  50 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I
e caeSp111.Scaffold582    324068 107 +   484378 I

a score=1363.000000
s ce10.chrX              2792564 36 + 17718866 AATTTTATATGAATACCAAACCATAGCAACTGGTGC--------------------
s caeRem4.Crem_Contig15   301327 51 -  1794024 AATTTCATATTAATAA-----TAGAGTAAGTGATAATCAATATGGTAACTGGGCAC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3471616 49 -  4147112 AATTTCATATTAATAACTGAGTAGAATAAGTGATAATCATTGTGGT---TGA----
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I
e caeSp111.Scaffold582    324068 107 +   484378 I

a score=9592.000000
s ce10.chrX              2792600 127 + 17718866 ATTTTATGCATAAATATCGACTTCA---TATATGAGTCTTCAAGGAGT---------CGTTGCGAACCACATTTAGAATTCCAA------------------TTCC--ACAATGTTCAATATTTGTTGATTTCTTCAATTTT------AAAGAGAAAAAAACAAC
s caeRem4.Crem_Contig15   301378 157 -  1794024 ATGTTATGCATAAATTGTAGTTGTATGTTATATGAATCTGAGAAGAGCCTAGAAAAGAGAAGCG-AATACATC---AATACCCAACCACCActcattttgttattt--ttgttgttcccTGTTTTCCG--TTTCTCCATTCACagtataaaaagagaaaggcaGA
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    324175 135 +   484378 ATGTTATGCATATATTGTAGCTG-----TTTATGAATCTCTGAAGAGTCCC------AGAAGAG-ACTACATT---CATACCCACTACTCGTTAGTCTTGTTTTcc-----ccgtttt---tttttca---tttttcattcactg---aaaaaca-gaaagcaGC
i caeSp111.Scaffold582  I 107 C 0
s caePb3.Scfld02_0       3471665 141 -  4147112 ATGTTATGCATATATTGTGGCTG-----TTTATGAATCTGAGAGGAGG---------AGTCAAT-ACTACATT---AATACCAACAGACTTTGCTGCCTGTTTTCCGTTCACCATTCTCGGTTTTCCG---TTCTcaatttaaca---aaaaagaggaaagcaGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17544994 1921 - 21540570 I

a score=38138.000000
s ce10.chrX              2792727 100 + 17718866 ------CGCTTCATTTTCC-ACCACCAAATTAAAGCAGATCACTCGCGTTAATTCCTCTCTGAATT--------TTTCCCCCTCTGCTGCAGCTTCATTTTA---GATTGTTTTCGTT-----------
s cb4.chrX              17546915 108 - 21540570 ------CGCCTCATTTTTT-ACCGCCAAATTAAAGCAGATCAATCGCGCTaattcctctcttttttggaatccttTTCCCCATTCATTTTGCTTCACATTTC---GATTGTTTTTATT-----------
i cb4.chrX              I 1921 I 292
s caeRem4.Crem_Contig15   301540 107 -  1794024 ------cgcttcattttttcaccgCCAAATTAAAGCAGATCACTCGCGTTAATTCCTCTCTCTGTT---CTCCTCTT--CCGACCgcttcgtttcattttttttagattgtttttatt-----------
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    324310 104 +   484378 AGCTTGTGT-TCCTTCTCT-ACCGCTAAATTAAAGCAGATCATTCTCGTTAATTCCTCTCTCTGTT------------------Cgtttcgtttc-gtttta---gattgtttttatttctgtgtgc-t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471806 116 -  4147112 AGCTTCCGTCTCATTTTTT-ACCGCCAAATTAAAGCAGATCATTCTCGTTAattcctctttctctt-------tcct--aCAGCCGCctcgtttctttttta---gattgtttttgtttctctgtgctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I

a score=5325.000000
s ce10.chrX              2792827 62 + 17718866 --------AGAGCCGTTGTTTTTTTTCGTATATATAATGGAAGTGCTCTTTCTTTTCGATTCATTTTTTT-----------
s caeRem4.Crem_Contig15   301647 81 -  1794024 tctgtgCTTCTGCTGGCGTTTCGTATCTTTttggggaatgaaaaattgccaacactcttcttctttttctttcttttcttt
i caeRem4.Crem_Contig15 C 0 I 157
s caeSp111.Scaffold582    324414 61 +   484378 --------tcagctggcttttcgtatcttttttcGGAC-GAAAAATTGCCACCGCTCTTCGTTTTTGCTC-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471922 62 -  4147112 --------tttgctggcttttcgtatcttttttaggaaggaaaaattgcctcttttccttttatttttgc-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I

a score=-371.000000
s ce10.chrX              2792889  6 + 17718866 TTCTTC---------
s caeSp111.Scaffold582    324475 15 +   484378 Tcctcctttttattt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3471984  6 -  4147112 ctctcc---------
i caePb3.Scfld02_0      C 0 I 229
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I
e caeRem4.Crem_Contig15   301728 157 -  1794024 I

a score=60.000000
s ce10.chrX              2792895 2 + 17718866 CT
s caeSp111.Scaffold582    324490 2 +   484378 tt
i caeSp111.Scaffold582  C 0 I 210
e caePb3.Scfld02_0       3471990 229 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I
e caeRem4.Crem_Contig15   301728 157 -  1794024 I

a score=0.000000
s ce10.chrX              2792897 555 + 17718866  
e caePb3.Scfld02_0       3471990 229 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I
e caeSp111.Scaffold582    324492 210 +   484378 I
e caeRem4.Crem_Contig15   301728 157 -  1794024 I

a score=718.000000
s ce10.chrX              2793452 31 + 17718866 AAAATTCCGTTGGTCAGTGCA----AATCGGTATC
s caeRem4.Crem_Contig15   301885 35 -  1794024 AGAATTTTGTTGGTCTTTGCCGTTCAATCTGTGCG
i caeRem4.Crem_Contig15 I 157 C 0
e caePb3.Scfld02_0       3471990 229 -  4147112 I
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I
e caeSp111.Scaffold582    324492 210 +   484378 I

a score=606.000000
s ce10.chrX              2793483 25 + 17718866 CAA----TTTACGAGTCAAA-TAATCCTCG
s caeRem4.Crem_Contig15   301920 28 -  1794024 CAAAAGGTTTAC--TTGAAATGACTCCTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3472219 23 -  4147112 CAA----TTTAC--TTCGAA-GACTCCTAA
i caePb3.Scfld02_0      I 229 C 0
e caeJap4.Scaffold18213   600716 1261 +   720316 I
e cb4.chrX              17547023 292 - 21540570 I
e caeSp111.Scaffold582    324492 210 +   484378 I

a score=1257.000000
s ce10.chrX              2793508 4 + 17718866 TGAA
s caeRem4.Crem_Contig15   301948 4 -  1794024 TGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3472242 4 -  4147112 AGGA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   601977 4 +   720316 TGGA
i caeJap4.Scaffold18213 I 1261 C 0
e cb4.chrX              17547023 292 - 21540570 I
e caeSp111.Scaffold582    324492 210 +   484378 I

a score=2128.000000
s ce10.chrX              2793512 5 + 17718866 TAGAT
s caeRem4.Crem_Contig15   301952 5 -  1794024 TAAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    324702 5 +   484378 TGGAC
i caeSp111.Scaffold582  I 210 C 0
s caePb3.Scfld02_0       3472251 5 -  4147112 CAAAC
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213   601981 5 +   720316 TAAAT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17547023 292 - 21540570 I

a score=79490.000000
s ce10.chrX              2793517 155 + 17718866 GGAACGGC---CGGTTAACTGCTGCCAGATGAGTTATATAAACATATCGGATGTCA---GA-ACCTTTCTCGGCAAATCATATCGCATCATCGTC-ATCCTCA-------GGGTCAACCGTTCAAG---------AGGCCAA------TTTCTTCTAATCCGCTATTAAAACCA-TAACAC--------ACACA---------
s cb4.chrX              17547315 156 - 21540570 GGAACGGA----GGTTTATTGCCACCAGATGAGTTATATAAACAGATCGGATGTCA---ATGCCCTTTCTCGGTCCTTCGCATTGCATTATCGTCAAATCATA-------CGGTCAACCGTCC---------------CCCTCATCGTCTTTACCTAATCCGTCATTTAAACCA-TAACAC--------ACGCA---------
i cb4.chrX              I 292 I 84
s caeRem4.Crem_Contig15   301957 162 -  1794024 TGAACGAAACGCGGTTTACTGCTGCCAGATGAGTTATATAAACATATCGAATGTCG---AT-TTCTTTCTCGGCCCATCGTATCGAATCATCATC-AACCGTA-------CGGTCAACCGTTCAAC---------GGGCCTTTACC--TTTTACCTAATCTGTCATTCAAACCA-taacac--------acata---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    324707 152 +   484378 GGAACGGT----GGTTTACCACTGCCATATGAGTTATATAAACATATCGGATATCG---TT-CCTTTCCTCAACCTATCATATCGGATCATCGTC-ACGCATA-------AGGTCATCCGTTCAAG---------AGGCC--------GCTCACCTAACCCGTCATTCAAACCA-TAACAC--------ACGTT---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3472256 171 -  4147112 GGAAC-GC----AGTTTACTGCTACCAGATGAGTTATATAAACATATCGGATTTCGTTTTT-CCCTTTCTCGGTCTATCATATTGAATCATCATC-ATGCAGA-------CGGTCAACCGTTCAAGGAGGGCGACAGGCC--------TTTTACCTAATCCGtcactcaaacca-taacacaaagacaaacact---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   601986 165 +   720316 ---GAGGC----AGTTTACTGCTGCCAGATGAGTTATATAAACATATCCGATGTCC---TT-CCAT------GGCCATCATATCGAATCATCATC-ATGTGTATTCTAGGCGGTCATCAATTCCTT------------TCCGTTCCGtttttttCGTACCTCTTTCCTATGCGATTAACCT--------GCGCAATACAAAAA
i caeJap4.Scaffold18213 C 0 C 0

a score=-11614.000000
s ce10.chrX              2793672 71 + 17718866 CATCTGCATGCATACCC----------------GTAAGGGCAGTAAGAAAAACACCCCGACAGTGACCA---CCATTA---CTCCCCGCCAAA----
s caeRem4.Crem_Contig15   302119 88 -  1794024 cacacacacataccCTCTCTTCCTCCCTTTATGGCGGAGGATAT-ACGAAAACACCTCGA-ACGGTCTG---CCCTCACCTCTTCCCGCCAAA----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    324859 48 +   484378 CACCAATGCG-----------------------GTGGCCG-----ACGAAAACACCT-----GGGACTG------------TCCACCACCAAG----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3472427 86 -  4147112 catcaacacatacactctctctctcacacacacacaaacg-----gGGAAAACACCTCAG-AGGGACCTCTTACGTCGGCCTCTCCCGCCAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   602151 59 +   720316 --CAAATGCATATGGTC----------------------------ACCAACGTGCCTTCT-----CCCA---CCATCACCACATACCTCCAGTTGGC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17547471 84 - 21540570 I

a score=127181.000000
s ce10.chrX              2793743 388 + 17718866  
s cb4.chrX              17547555 410 - 21540570  
i cb4.chrX              I 84 I 106
s caeRem4.Crem_Contig15   302207 409 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 114
s caeSp111.Scaffold582    324907 404 +   484378  
i caeSp111.Scaffold582  C 0 I 72
s caePb3.Scfld02_0       3472513 409 -  4147112  
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18213   602210 473 +   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-5003.000000
s ce10.chrX              2794131 29 + 17718866 TAAGAAAAA------------TATTTCGAGGAAATGTTGCA
s caeRem4.Crem_Contig15   302730 41 -  1794024 TgcgaaaaaacgaattttgatacATTCTACCTAATCATGTT
i caeRem4.Crem_Contig15 I 114 I 14
s caeSp111.Scaffold582    325383 17 +   484378 GATGAAAAG------------------------GTCATGTA
i caeSp111.Scaffold582  I 72 I 68
s caePb3.Scfld02_0       3472940 18 -  4147112 GGTGAAAAA-----------------------TAACTTGTA
i caePb3.Scfld02_0      I 18 I 119
s caeJap4.Scaffold18213   602683 36 +   720316 TGGGAAAAA---TCTTTTGCGTAAATCGAGTTTATcgta--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17547965 106 - 21540570 I

a score=-9828.000000
s ce10.chrX              2794160 42 + 17718866 CTAGTCTGCGCGGCTTTCTTCTCAAA----------------------------------------------------------CTCCAAAATTCAAAAT
s caeRem4.Crem_Contig15   302785 32 -  1794024 CGGTTCTG--------TCTTTTCcga----------------------------------------------------------gtcaaaatttcaaa--
i caeRem4.Crem_Contig15 I 14 C 0
s caePb3.Scfld02_0       3473077 28 -  4147112 CTAATTTG--------TTGCTTCCgg------------------------------------------------------------catttcttct----
i caePb3.Scfld02_0      I 119 I 19
s caeJap4.Scaffold18213   602719 84 +   720316 cttctttt--------ttttttttgaaaagaaatgaaatgaaatgcgaatGCGCGCCGACATGAATAGCTGTAAAAGACTGACGGACACAAT--------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17547965 106 - 21540570 I
e caeSp111.Scaffold582    325400 68 +   484378 I

a score=-13319.000000
s ce10.chrX              2794202 41 + 17718866 TTTTGAATAGA-----------------------------------------------------TGCCTAAAATCTACTTAG-----CATTCGGT----GTAG
s caeRem4.Crem_Contig15   302817 42 -  1794024 -ttgcatGCAA-----------------------------------------------------CATGAAAAGCCTCTTTAATC---ATCTCAGTGAGG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    325468 37 +   484378 TTTCGGAGCAA-----------------------------------------------------CGTGTAATGTCTCGCCGC-----ATTTGAGA--------
i caeSp111.Scaffold582  I 68 C 0
s caePb3.Scfld02_0       3473124 38 -  4147112 attccgaGCAA-----------------------------------------------------CATA-AATATCACATCATTG---CTCTCAGG--------
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18213   602803 94 +   720316 -TTCGGATCTAAAAAAGAAGCTCGCATcgaattctatttttctttgtcaTCCTCTGCCACCTCGTAAGAAAAACCTCGTCATTCATTTTCCGAGG--------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17547965 106 - 21540570 I

a score=126863.000000
s ce10.chrX              2794243 1227 + 17718866  
s cb4.chrX              17548071 1382 - 21540570  
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig15   302859 1345 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    325505 1392 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3473162 1378 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   602897 1374 +   720316  
i caeJap4.Scaffold18213 C 0 I 13

a score=-1316.000000
s ce10.chrX              2795470 26 + 17718866 GGGTTGTGGTAGTGTTAGTGTGGC--------AA
s cb4.chrX              17549453 29 - 21540570 TGGGGGAAGAAGT-----TGTGGCGCCaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304204 14 -  1794024 TTCG-------GT-----TGTGGC--------AA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    326897 11 +   484378 A----------GT-----TGTGGC--------AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3474540 11 -  4147112 A----------GT-----TGTGGC--------AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   604271 13 +   720316 I

a score=56412.000000
s ce10.chrX              2795496 325 + 17718866 ACGATAAAAATC----------TGTCCACAAATA-TGCC-GGCTATTTGTTTTA------------------------GTACACACAAGACGACGAAAAATAAAAACTTTGAAGTCTT----------AGGAAGTCGTTTGAAGTTTGTTTTTTTACG-------------AAGAAGTCGACCAT----GAGGGTG------------TCAAGCTTT------GCCAACGATCGTT----GTCTCAA---AGTAACTCAAAGTAATTA---CGGGTTGTCCCTCT-GAGGAGGATCTTGAAATGGCATCACCATCATCAAGATGCGGAGAAAAATATAGGTG-----------GACACAT----CCAAATGCTGCCGTACGTCTCCATGTTAATTAAACTGACATTCAAATATG----TCCTTTCA--------AGGCCCATC-----C
s cb4.chrX              17549482 315 - 21540570 CCGATAAAAATCTGT----GTGTGTCCACAAAAACGACGATGTTGTTTGTTTTA------------------------GTACAAATA--------------CAAAACTTGGAAACTttgttttcccaaaaaaagtcTCCAC-------ATTATTGGCATCAAACTTAGCATGATATGTAGACTCTTTTTTGGGGGA------------TGCTAGCGT------CCAGAGGGCTATTCA--GTCTCCAAAAGGGAACTTTGAATAATTG---CGGGTTGTT-------GAAGGATTCATG--------------GTGTCAAGATGGA-----------AGGTG----GTGCAGCAGCACAT----CCAAATGCTG-----TGCGTC-----TAATTACACTCATATCCG---ATG----tcctttcgatttttcaaggtttctc-----T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304218 332 -  1794024 ACGATAAAAATC----------TGTCCACAAACA-ACTGAGGCTGTTTGTTTTA------------------------GTACGCA-----------------AAAACTTGGAAACTTC----------AAAACgtctttttt---gtagttattGCCATTGGAGTCGGAATAAAA--------------AATGGCA------------TTTTGGTATTCTTTGCCTTGAAACCAACCACCATCTTAAGAAACCAACTCTGACTAATTG---CGGGTTGTCGTTTTGGGAGGGAATCTTGAAGTGGCG-CATCAgtgtcaagaagaag--aaatttatAGGTG-CACACGCATAGCCCCAT----CCAAATGCTGCCGTATGCGCCT-TGTTAATTACACCGACATCCGAATATG----TCCTTTCG--TTTTCAAGGT---CC-----T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    326908 334 +   484378 ACGATAAAAATC----------TGTCCACAAACA-AGCCAAGCTGTTTGTTTTA------------------------GTACAC------------------AAAACTTGGAAACTT-----------AAGACGTCGTTTTT---GCGTTTTCTGCCATTCAagttagaataaaaaatagacgGGAATAGATGGCGATCGGTC-----TTTTGTCGC------CCCCAAAGCC-------ATCTGAAGCGCAGAACTCTGACTAATTG---CGGGTTGG-------GGAAGAGATCTTGAAG---------TGGCATCAAGATGAAGGAAAACATATAGGTGTCCCATGCATTGACCCAT----CCAAATGCTGCCGTATGCGTCT-TGTTAATTACACTGACATCTGATTATG----TCCTTTCG--TTTTCAAGGTccccccccTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3474551 336 -  4147112 GCGATAAAAATC----------TGTCCACAAACA-TGCGAAGCTGTTTGTTTTA------------------------GTACaca-----------------aaaacttggaaactt-----------AGGATGCCGTTTTTTCCGCG-TTTCTGCCATTCgagttgaaataaaaaatgga--gaaatggaGGCTAAAAAGCCCATCGTCTTGTCGC------CTTGAAGCCC-------ATCTAAA---CCAAACTCTGACTAATTG---CGGGTTGTC------GTTTGGGATCTTGAAGGGA----ATGGGCatcaagatgaagaaaaatatataggTG--CCATACATTTACCCAT----CCGAATGCTGCCGTATACGTCG-TGTTAATTACACTGACATCTGAATATG----TCCTTTCG--TTTTCAAGGTCCCCA-----T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   604284 357 +   720316 ACGATAAAAATCTGTTGCCGTCCGTCCACAAACA-TGGC-GGGtgtttgttttagtgttttagtttattttattttttgtacaca-----------------aaaactttgaaactttattttcc---attcctttggttta---gcatttttcgttttaaaaatgaccaaatatAGCAAG--------AAAGCTA------------ACAAGACGG------CTGGGGGTCA-------GTTT------TTCATCTCTGCCTTCTTGAAACG-------------AAGTGAAAGCGCGAAAGGATG-GATGGATGAGAACATGGAA--AAATATGTAGGTG-CACATACATGAACGCGTAGAGCGAAATGCTGC----TGCGACCATGTTAATTACACTGACACCCAAATACGTATTTCTTTTCG--ATTTCAAGGTCCACT-----C
i caeJap4.Scaffold18213 I 13 I 23

a score=-2035.000000
s ce10.chrX              2795821 27 + 17718866 TTCCTTCTCAATCCTCGCCG-------C------TTACCC
s cb4.chrX              17549797 27 - 21540570 CTTTTTAGAATCACTTTCCT-------T------TTTCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304550 26 -  1794024 CTT-------TCGCTTTCCT-------TCTTAGGTTTTCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    327242 39 +   484378 CTCCATCTTGGCGATTTCCCCTTCTCTT-TAAGGTCTCCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3474887 32 -  4147112 CTCCATCTTGGCGCTTTCCC-------T-CAAAGGTTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   604641 23 +   720316 I

a score=149466.000000
s ce10.chrX              2795848 336 + 17718866 TT---AA----------ATGT--------TAT-ACGTGTGGAGCAAAATGAG-AAAGACAAGGAAA-------AAAATGAATCGTC---AGTAGCACAGATTT--AGGTGTTTCGCTAATTGTTTGCGTTTAGAAT------TGGTGATGATTTTTT---------TCTTGT-----TGCG-----CGAA-GGC--------AAAGTTTGAACAGTTAT-TCTTTCCTTGTTCTCCTTATCATC----GA-------------------CCTTTCTTCACA----TCTGCTTTTAC------------AAAATCAATGTCGCTGCCTGTAC----------------TTCAGAAGAAGTATGGGTTTTGGGGCTCTGTATTCTCAAAATATTGCTTCTTGTGGACTATGGTTAAAAAGCGTCGCGATAAGGAAGCTGTCGTCAAAATTCAGCAGAAGGTAC
s cb4.chrX              17549824 373 - 21540570 TT-----------------GT--------GATGACATAAAGAGGAGCAAGGG-Gaagaatacgaaa-------aaaaagaagaggaa--aatag--GAGATTTA-AGGTGTTTCGCTAATTGTTTGCGTTTAGAATTTTAGGTGGTGATGCTTCT----------------TAGCACAGCG----AAAAACggttaaaaaaaagagtttgaaCAGTTAt-tcttttcttgttcttcttcttcccaaattttccattatAACCCAAAAACCCTACTTC-TTg----tattctctctc-----------------tc---tctctctctgaaACTGTCGATGTCCATCCTTCAGAAGAAGTATGGATTCTGGGGTTCACTTCTAACGAAATATTGCTTTTTGTGGGCACTTGTCAAAAAGCGACGAGATAAAGAAGC---TGAGAAGCTTCAGCAGGAGGTA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304576 331 -  1794024 TTGT-------------GCGT--------GATGACTTGCAGAGCAGAAAT-----AAACTAAGAGG-------GAAAAGAATAGTCACTAGTAG--CAGATTT--GGGTGTTTCGCTAATTGTTTGCGTTTAGAAT------TGGTGAtgctttt----------------t-----tgcg----aaaaacgGC--------AAAGTTTGAACAGTTAT-TCTTCTCTTGTTCATCaccatttc----tttcttctctaa---------CTTACTTCATCG----TCTTCCTTAAC-----------------CCATGTCTCTTCCTGTAA----------------TTCAGAAGAAATATGGATTTTGGGGttcattattttccaaatattgCTTTCTGTGGACACTTGTCAAGAAGCGGAGAGATAAGGAAAG---CGTGAAGATTCAGCAGAAGGTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    327281 337 +   484378 TTTCTAA----------GCGT--------GATGACAtgaagagcaa---------aaaagaagaaa-------ggaaggGATCGTC---AGTAG--CAGATTT--AGGTGTTTCGCTAATTGTTTGCGTTTAGAAT------TGGTGATGCTTTT----------------T-----TGCG-----CAAACGGC--------AAAGTTTGAACAgttat-tcttttcttgttcttctccttctt----ct-------------------tctgcttcttcataacttttccttAACAACACTTGTAAAAATGTCCACGTCTCTTCCtgttc----------------ttcagaagaaatatgGTTTCTGGGGCTCTTTATTCTCtaaatattgttttctttggaCTATGGTCAAGAAGCGGAGAGATAAGGAGCG---CGgcgaaattcagaagaaggtAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3474919 327 -  4147112 TT---------------GCGT--------GATGACATGAAGAgcag---------aaagaaag----------gaaaaggatCGTC---AGTAG--CAGATTT--GGGTGTTTCGCTAATTGTTTGCGTTTAGAAT------TGGTGATGCTTTT-------------TTGT-----TGCG-----CAAACGGC--------AAAGTTTGAACAgttat-tcttttcttgttcttctccatctt----ct-------------------tctgtttcaccG----TCTTCCTTAACTAC-CTTATCACAACCTCTATGTCTCTACCTGTAC----------------TTCCTAAAAAGTATGGATTCTGGGGTTCATTATTCTCAAGATATTGCTTTTTGTGGACAATGATCAAAAAGCGGAAAGATAAGGAAGG---CGtcaggattcagaagaaggtAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   604664 383 +   720316 ----TGAAAGGCTGTTCGCGTCTTGTTAGAATAAAATACTGAGCAAAAGGGGAGAAGGGTAAAAGAACACTGGGCAAGGGATCGTC---AGCAA--CAGATTTAGAGGTGTTTCGCTAATTGTTTGCATTTAGAATTTTGGGTTGCTCTGCTTTTGTGGAGATTGACGTTTT-----TGAGCAAAGAAAACGAC--------AA--TTTGAACAGTTttctcttctcttgttcttcttctcctt----ct-------------------gtttttttcacc----TTATTCTTATC--AAATGGACCCCAATTCTATTTCCCTTCCAGTTT----------------TGCAAAAAAGATACGGTTTCTGGGGGCAATTCTTATCAAagtattgttttttgtggACTTTACTCAAGAAG------GAAAGAGAATC---TGTCAAGGTTAAGAAAAAGGTAC
i caeJap4.Scaffold18213 I 23 I 49

a score=5374.000000
s ce10.chrX              2796184 22 + 17718866 CAGTTGCTGTCGGACACC-CCTC
s cb4.chrX              17550197  4 - 21540570 -------------------CGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304907 22 -  1794024 CAGTTGCTGTCGGACACC-CGTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    327618 23 +   484378 CAGTTGTTGTCTGACACCACTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3475246 22 -  4147112 CAGTTGTTGTCTGACACT-CCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   605047 49 +   720316 I

a score=403995.000000
s ce10.chrX              2796206 794 + 17718866  
s cb4.chrX              17550201 749 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   304929 781 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    327641 771 +   484378  
i caeSp111.Scaffold582  C 0 I 34
s caePb3.Scfld02_0       3475268 774 -  4147112  
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold18213   605096 803 +   720316  
i caeJap4.Scaffold18213 I 49 I 43

a score=753.000000
s ce10.chrX              2797000 22 + 17718866 GGGAACAGAATATACAAGGAAA
s cb4.chrX              17550950 16 - 21540570 ------AGAAAATACTAGAAAA
i cb4.chrX              C 0 I 14
e caePb3.Scfld02_0       3476042 34 -  4147112 I
e caeJap4.Scaffold18213   605899 43 +   720316 I
e caeSp111.Scaffold582    328412 34 +   484378 I
e caeRem4.Crem_Contig15   305710 31 -  1794024 I

a score=0.000000
s ce10.chrX              2797022 386 + 17718866 CCAGGGGCGTGGGAGCAATTGATGTTTGGCGAATACCGAAAATTGGAAAAAAAACAAGCAATTGCCGATCGCCGAAAAATTCCGTCCCCTACAGAGACCTTCCTTTTTCTCATCGTTGTGTCGAATTTTTTTGAAATTTACACAAAAATGTAGAGAAATATTCGCACTTTCTGTAGGCAATTTCAATATTGCTTAAAAATTTTTCGTTTTGTTCAAAGTGTAATCTTCAGAAAACACAAATATTTGTCTATATTTTCATATAAATTTTCAAGAAAGTTCTACACAACAATGAGAAAAAAGAAATTTTGTAAATGTTGTTTTCGTAAAAAAAAACCAAGTACCGCACATCTCTGGTCCCCTAAAGCCCTTCTACCATCCCCTAGAGA
e caePb3.Scfld02_0       3476042  34 -  4147112 I
e caeJap4.Scaffold18213   605899  43 +   720316 I
e cb4.chrX              17550966  14 - 21540570 I
e caeSp111.Scaffold582    328412  34 +   484378 I
e caeRem4.Crem_Contig15   305710  31 -  1794024 I

a score=614.000000
s ce10.chrX              2797408 9 + 17718866 AAAAATAAC
s cb4.chrX              17550980 9 - 21540570 aaaaataaa
i cb4.chrX              I 14 C 0
e caePb3.Scfld02_0       3476042 34 -  4147112 I
e caeJap4.Scaffold18213   605899 43 +   720316 I
e caeSp111.Scaffold582    328412 34 +   484378 I
e caeRem4.Crem_Contig15   305710 31 -  1794024 I

a score=0.000000
s ce10.chrX              2797417 4 + 17718866 ATTG
e caePb3.Scfld02_0       3476042 34 -  4147112 I
e caeJap4.Scaffold18213   605899 43 +   720316 I
e cb4.chrX              17550989 0 - 21540570 C
e caeSp111.Scaffold582    328412 34 +   484378 I
e caeRem4.Crem_Contig15   305710 31 -  1794024 I

a score=-1014.000000
s ce10.chrX              2797421 2 + 17718866 TT-
s caeRem4.Crem_Contig15   305741 2 -  1794024 -TT
i caeRem4.Crem_Contig15 I 31 C 0
s caePb3.Scfld02_0       3476076 2 -  4147112 AC-
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold18213   605899 43 +   720316 I
e cb4.chrX              17550989 0 - 21540570 C
e caeSp111.Scaffold582    328412 34 +   484378 I

a score=1820.000000
s ce10.chrX              2797423 2 + 17718866 TT
s cb4.chrX              17550989 2 - 21540570 tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   305743 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    328446 2 +   484378 tt
i caeSp111.Scaffold582  I 34 C 0
s caePb3.Scfld02_0       3476078 2 -  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   605899 43 +   720316 I

a score=811807.000000
s ce10.chrX              2797425 911 + 17718866  
s cb4.chrX              17550991 909 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   305745 919 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    328448 913 +   484378  
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3476080 895 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   605942 910 +   720316  
i caeJap4.Scaffold18213 I 43 C 0

a score=-25488.000000
s ce10.chrX              2798336 101 + 17718866 ATCCGTTAGTTTTATTTTTTTTTTAATTTGAAGG------------------------TAGAGTAG------CGCCAGTGGCCAtttggcaaactgccaaaattaaaaaaaaaagagcttttaagaaaatc
s cb4.chrX              17551900 127 - 21540570 AACTGTAAGTTctaaaacaattttaattgGATATTTAATCGTAACATACGGGCTaaaatggagtctttaaaaaatcggaaaatatctgaaaaattggaaaatttcaaaaaaaaaaaagattt----gaatc
i cb4.chrX              C 0 I 219
s caeRem4.Crem_Contig15   306664  19 -  1794024 GACTGTGAGTT-----------------------------------------------TAGATTCT-----------------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3476975  33 -  4147112 ---TGGCCATT-----------------------------------------------TGGACCTC--------------------------ACCGTAAGTTGACAAGA----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   606852  17 +   720316 --------------------------------------------------------------------------------------------ATCAGTAAGTCAAACAA----------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    329361   5 +   484378 I

a score=0.000000
s ce10.chrX              2798437 5 + 17718866 cagag
e caePb3.Scfld02_0       3477008 0 -  4147112 C
e caeJap4.Scaffold18213   606869 0 +   720316 C
e cb4.chrX              17552027 219 - 21540570 I
e caeSp111.Scaffold582    329361 5 +   484378 I
e caeRem4.Crem_Contig15   306683 0 -  1794024 C

a score=-23952.000000
s ce10.chrX              2798442 123 + 17718866 caatgtcgcatgttccgacccctcttattactaataattaaaacaaaattgaagtataaaaatcgtagaaaaactttttttggtcgatttcaaaaagatttcaacagtggcaaaaactccata
s caeRem4.Crem_Contig15   306683  30 -  1794024 --A-------------------------------------------------------------------------TATCTga---agttttcaacaa---------------aaatgccTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    329366  30 +   484378 --------TAAGTTC---------------------------------------------------------acgttttctga---ttttctcattca-------------------------
i caeSp111.Scaffold582  I 5 I 9
s caePb3.Scfld02_0       3477008  17 -  4147112 ----------------------------------------------------------------------------GTTTCGA-----ttcgaaaata-------------------------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18213   606869  29 +   720316 ------------------------------------------------------------------------------------CTTATTGTTAACAA----------AATATAAATACCTTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17552027 219 - 21540570 I

a score=0.000000
s ce10.chrX              2798565 13 + 17718866 attgccactgttt
e caePb3.Scfld02_0       3477025 11 -  4147112 I
e caeJap4.Scaffold18213   606898  0 +   720316 C
e cb4.chrX              17552027 219 - 21540570 I
e caeSp111.Scaffold582    329396  9 +   484378 I
e caeRem4.Crem_Contig15   306713  0 -  1794024 C

a score=-2987.000000
s ce10.chrX              2798578 107 + 17718866 ctatgatatttggtcattttggcactattggagtgttttctaatcaattacctaactgacgctacAGCTTTGATAAAAACATAAGAAAAAAAAACAAAATTATATAA
s caeJap4.Scaffold18213   606898   5 +   720316 --------------------------------GTGTT----------------------------------------------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3477025  11 -  4147112 I
e cb4.chrX              17552027 219 - 21540570 I
e caeSp111.Scaffold582    329396   9 +   484378 I
e caeRem4.Crem_Contig15   306713   0 -  1794024 C

a score=573.000000
s ce10.chrX              2798685 2 + 17718866 AG
s caePb3.Scfld02_0       3477036 2 -  4147112 aG
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18213   606903 2 +   720316 AG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17552027 219 - 21540570 I
e caeSp111.Scaffold582    329396 9 +   484378 I
e caeRem4.Crem_Contig15   306713 0 -  1794024 C

a score=53070.000000
s ce10.chrX              2798687 82 + 17718866 TTTCAGATGGACACTACCACACCGCTCAGAACATCTGAAATCAACAATGAAGTGGAGCTTGTCGATAGCTGTTAAAACA-------CGT
s cb4.chrX              17552246 79 - 21540570 tttcagatggat---aCCACACCACTTCGAACAGCCGAAATCAACAACGAGGTGGAGCTTGTCGACAGCTGCTAAACCC-------GGT
i cb4.chrX              I 219 I 46
s caeRem4.Crem_Contig15   306713 83 -  1794024 TTTCAGATGGAT---ACCACGCCGTTGAGAGCTGCTGAAATCAGCAACGAGGTGGAACTTGTCGACAGCTGCTAGAATCTT---ATGAT
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    329405 78 +   484378 TTTCAGATGGAC---ACGACACAAATCCGGACA---GAGGTCAACAATGAGGTAGAACTCGTTGATAGTTGTTAGAATA-----AAAGC
i caeSp111.Scaffold582  I 9 I 5
s caePb3.Scfld02_0       3477038 86 -  4147112 TTGCAGATGGAC---ACCACTCCACTCAGAACAGCTGAGATTAACAATGAGGTCGAACTTGTCGATAGCTGTTAAACTGTGAATATAGC
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   606905 75 +   720316 TTCCAGATGGAT---ACAACGCCGTTGAGAACAGCCGAAATCAACAACGAAGTCGAGCTGGTGGACAGTTGTTAAGAC-----------
i caeJap4.Scaffold18213 C 0 C 0

a score=-965.000000
s ce10.chrX              2798769 20 + 17718866 TAAAACT------------------ATCAATTATTGAC
s caeRem4.Crem_Contig15   306813 20 -  1794024 GGAAATC------------------AATCGATACTCGT
i caeRem4.Crem_Contig15 I 17 I 14
s caeSp111.Scaffold582    329488 20 +   484378 TGAAATC------------------AACCGATACTCAC
i caeSp111.Scaffold582  I 5 I 80
s caePb3.Scfld02_0       3477129 38 -  4147112 TAAAAGCTCTCGATGCCTGTCAAAAGACTGATAATTAT
i caePb3.Scfld02_0      I 5 I 4
s caeJap4.Scaffold18213   606980 20 +   720316 TGCGACT------------------AACATCTGATTGT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17552325 46 - 21540570 I

a score=-4950.000000
s ce10.chrX              2798789 16 + 17718866 -----ATTGAATT----ATT--GAATT
s caeRem4.Crem_Contig15   306847 10 -  1794024 -----GTT-AATT----ATT-------
i caeRem4.Crem_Contig15 I 14 C 0
s caePb3.Scfld02_0       3477171 10 -  4147112 -----ATT---TT----ATTCT-----
i caePb3.Scfld02_0      I 4 I 2
s caeJap4.Scaffold18213   607000 18 +   720316 ATAGAACTGAACTGAAAA---------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17552325 46 - 21540570 I
e caeSp111.Scaffold582    329508 80 +   484378 I

a score=-8280.000000
s ce10.chrX              2798805 30 + 17718866 TGTAAAAAAAAAAGAGTTCAA----------ATCCTCCCA
s cb4.chrX              17552371 20 - 21540570 TGTAAAAAA-----CGGCCAt---------------ccca
i cb4.chrX              I 46 I 8
s caeRem4.Crem_Contig15   306857 32 -  1794024 TGTAATCAA-----TGCTTGTAAATT---TTCTTCCCCTA
i caeRem4.Crem_Contig15 C 0 I 21
s caePb3.Scfld02_0       3477183 25 -  4147112 TGAAGTTCA-----AAGTCAT----------CCTTCCCCT
i caePb3.Scfld02_0      I 2 I 27
s caeJap4.Scaffold18213   607018 34 +   720316 TGTAAAGTC-----AGTCTGTAACTGAAAGACTgcaact-
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    329508 80 +   484378 I

a score=-8297.000000
s ce10.chrX              2798835 154 + 17718866 ACCTCCGTTTTAT------------ATATTTTAA-ATAT--------ACTATTTTCT--GAACCAGTTCCAATGG--TTTCCTGTTCAACTCTC------TAATGCCCTCTCCTATGGTTTGCGGGTATCA-----------ACTATCACT---AGATAGG-------CGTTCTTCTTCTTTTTTTTTAAATGTAACGGTAACA----CT
s cb4.chrX              17552399 165 - 21540570 -cccccaatcaTTCTACCCTGTTCTATGTTCAAAAATCCCGAGACA-A-tatttctt--atatttttccatCTCC--ATTTTAA---------------ACAAAACCCTCTCCTAAGGTTTGCGGGTCCCACTC----AGCCACCATCACT---AGCTAGAAAACAAGATTCTTTC-TC-----------ATGTAACCATGCCA----CT
i cb4.chrX              I 8 I 115
s caeRem4.Crem_Contig15   306910 159 -  1794024 -GCCCCGAttatttttcac------acatttATATATCT---GATATA-TATTCTTT--GAACCATTTCAACTTT--CTCCTAACCCCAGTTTC-----ATAACACCCTCTCCCATGGTTTGCGGGTTTTCTT------ACATCCATTACT---AACTAGA-------ATTCTTTCTTC-----------ATGGAAGTCCTACA----CC
i caeRem4.Crem_Contig15 I 21 I 9
s caeSp111.Scaffold582    329588 143 +   484378 -------------------------atctctatt--ttt--------a-tattccCATAATGCCAACTCATCA---------ACCACCCATTTCTGTATTTTATACCCTCTCCTATGGTTTGCGGGTTTTGTCTCAATCACCACCATCCCCCCAGAATAGA-------AT----TCTTC-----------TTGTAACCATAACACTTCCC
i caeSp111.Scaffold582  I 80 C 0
s caePb3.Scfld02_0       3477235 162 -  4147112 TCCCCCAGTTATTATTAG-------ACATATATT-ATCT--------A-TACTTTCTCAAAGCCAGTTCAATACT--ATACTAACGCATGATTC----ATTTACGCCCTCTCCCATGGTTCGCGGGTATCGTTTCAAACAACACCATCACT---AGTTAGA-------ATTTTCTCTCC-----------CTGTTACCATAACA----CC
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold18213   607052 153 +   720316 tattttatttgtttttgtc------ACCTC-----ATCTCCTGGTA-A-CTTTGCTCTAATTTCTATTCAACCCTTGATACATATAACACCATC-----GTTTTGCCCTCTCCTATGGTCAGCGGGTCGTCCTA----------AACCACT---AGATAGA-------CGTTTCT---------------ATGTAATGATAACA----CC
i caeJap4.Scaffold18213 C 0 C 0

a score=-15102.000000
s ce10.chrX              2798989 64 + 17718866 TTGTTAACT--------AAAATAGTGACAGTGTGCTCATTATCTCCCACTCTTTGTTTTTACT-------------------------GTCTAGATT
s caeRem4.Crem_Contig15   307078 68 -  1794024 ----TTGTC--------AAATTCC--ATAGAGTTCCAAG------ATGCTCTGTATAGATATTATTATCTTTAATCCTTTCccaaaat---------
i caeRem4.Crem_Contig15 I 9 C 0
s caeSp111.Scaffold582    329731 50 +   484378 CGATTCACTCTA-----AAACTCCTGATAGGGTTTCTAA--------ACTCTTTTTatatatt----------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3477397 28 -  4147112 CGATTCACT--------AAAT--------------------------GCTCTGTTTA-ATGCG----------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   607205 57 +   720316 TGATTCACCGCAGGATCAAAC---GGTCTGTGCTCCCGG---CTCATTTCCTGCTTAGATGTC----------------------------------
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17552564 115 - 21540570 I

a score=38361.000000
s ce10.chrX              2799053 185 + 17718866 GTTTATGTCGCCTCGTTTTTTTTCCTTCCTTCCCCCCGGTTATCAGCCGG-TCTGTGAATCTGTACGAGTT--TTTTTTTTCGTAGCTTACTACCAGTTTT---CTCC---------CTCCACCGTCA--------------TTCAATGAGTATTCACTAACATTTTT---------------------AAAATTTTAATCTTTGTATTTCATCTCTT------CCAATAAATTTAATTT---T
s cb4.chrX              17552679 205 - 21540570 GTTTATAT-----AGTTTTATTTTGTTC----CCCCCGGTTATCAGCCGGTTTTGTGAGTCTGTACGTGTCTCTTTTGTTCATTAG-------------TTCGACCCC---------taccaacaacaacaacctgCTCCTTTTTCTTGAGTATTCCCAACACTTTCT-CAAAGTATGT---TTTTGTGAATGA-TGAATTTTTGTATCTTATTTCTTTTCCCCCAAATAAACTTATTGT---T
i cb4.chrX              I 115 C 0
s caeRem4.Crem_Contig15   307146 159 -  1794024 ---------------tcttatttt--------ccccCGGTTATCAGCCGG-TTTGTGAATTTGTACGTGT---TCTTTTCCCGTAG-------------TT---CCCC---------CACCAGCTCCA---------------TTCATGAGTATTT---ACTTTCttt-ctaacaattt---ttttgtgaatgt-gAAATTCCTGTG-CTCAGCTCtt------ccaataaaatatttct---t
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    329781 191 +   484378 attattatt----catCTCAATTACTTCCATCTACCCGGTTATCAGCCGG-TTTGTGAATCTGTACGTG----TTTCTTTTAGTAG-------------TT---TTCCGTTTCCCTTCACCAGCTCCA----------------CATTTAGTATTGGCAAAATCTTTC---TAGCAACA---TTTTGTGAATGTATGATTCTCTGTATTTCAGCTGTT------CCAATGAATTTATTCtcatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3477425 170 -  4147112 ATTGTTGTC----AGCCCCATTT---------TCCCCGGTTATCAGCCGG-TTTGTGAATCTGTACGTG----TTCTTTCTCCTAG-------------TT---TCAC---------CATCTGCTCCA----------------TTCTGagtattcatcaaaaatt-----aaacaaat---taTTGTGAATGTCTTGATTCCTGTATTTTAACTAtc------caaatgaattttatttca-t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   607262 176 +   720316 ATTTATAAT----CGCTCCTCTTT--------CCCCCGGTTATCAGCCGG-TTTGTGAATCTGTACGTGT---TTTTCCTTTATAG-------------TT-ATTATC---------CATCAGCTTTT----------------TCCTAAGTATTCACTAACTTCACCAAAAACTAACTCAGTCTTGTAAA----ACAATCTTTGTATTTTAGTAACT------ACAATAAACTATATTT---T
i caeJap4.Scaffold18213 C 0 I 10652

a score=-1397.000000
s ce10.chrX              2799238 2 + 17718866 TA
s cb4.chrX              17552884 2 - 21540570 TA
i cb4.chrX              C 0 I 3047
s caeRem4.Crem_Contig15   307305 2 -  1794024 ta
i caeRem4.Crem_Contig15 C 0 I 2591
s caeSp111.Scaffold582    329972 1 +   484378 t-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3477595 1 -  4147112 t-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   607438 10652 +   720316 I

a score=-235.000000
s ce10.chrX              2799240 9 + 17718866 AACGTTGTT
s caeSp111.Scaffold582    329973 9 +   484378 aattttgtt
i caeSp111.Scaffold582  C 0 I 1440
s caePb3.Scfld02_0       3477596 3 -  4147112 aat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   607438 10652 +   720316 I
e cb4.chrX              17552886 3047 - 21540570 I
e caeRem4.Crem_Contig15   307307 2591 -  1794024 I

a score=640.000000
s ce10.chrX              2799249 25 + 17718866 GCTTTTTTTAGTTACACATTTAAAA
s caePb3.Scfld02_0       3477599 24 -  4147112 tccatttttacttg-atattcaaaa
i caePb3.Scfld02_0      C 0 I 2800
e caeJap4.Scaffold18213   607438 10652 +   720316 I
e cb4.chrX              17552886 3047 - 21540570 I
e caeSp111.Scaffold582    329982 1440 +   484378 I
e caeRem4.Crem_Contig15   307307 2591 -  1794024 I

a score=0.000000
s ce10.chrX              2799274 3197 + 17718866  
e caePb3.Scfld02_0       3477623 2800 -  4147112 I
e caeJap4.Scaffold18213   607438 10652 +   720316 I
e cb4.chrX              17552886 3047 - 21540570 I
e caeSp111.Scaffold582    329982 1440 +   484378 I
e caeRem4.Crem_Contig15   307307 2591 -  1794024 I

a score=59.000000
s ce10.chrX              2802471 11 + 17718866 TTCCAC----GCAGT
s caePb3.Scfld02_0       3480423 15 -  4147112 TTCCACCTCGACAAA
i caePb3.Scfld02_0      I 2800 C 0
e caeJap4.Scaffold18213   607438 10652 +   720316 I
e cb4.chrX              17552886 3047 - 21540570 I
e caeSp111.Scaffold582    329982 1440 +   484378 I
e caeRem4.Crem_Contig15   307307 2591 -  1794024 I

a score=509.000000
s ce10.chrX              2802482 5 + 17718866 AAATT
s caeSp111.Scaffold582    331422 5 +   484378 aaaat
i caeSp111.Scaffold582  I 1440 C 0
s caePb3.Scfld02_0       3480438 5 -  4147112 ATATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   607438 10652 +   720316 I
e cb4.chrX              17552886 3047 - 21540570 I
e caeRem4.Crem_Contig15   307307 2591 -  1794024 I

a score=34105.000000
s ce10.chrX              2802487 107 + 17718866 CCTAATCCCAACACTTCATTATGTCG-------------TCTTTCTTATTCA-------------TCATCTCCCCAA-CCAATA---TTCTTGACTAGCGGCTTCTCT-----------------CCGCCCTTCG-CCCGAATCCATCGTCTCTC
s cb4.chrX              17555933 138 - 21540570 cTTAGTACCAAGATTCTATTatgtcgtttttttcttcattcgttcttctttt-------------ttctttgtctcAGCCAATG---TTCTCGACTAGCAGCTT-TCTCTATTCCCTTCAGTTGCCCCCCAGTCGCCTCGGAATCGTCGTCTCTC
i cb4.chrX              I 3047 C 0
s caeRem4.Crem_Contig15   309898  98 -  1794024 ctTAATACCAAAACTCTATTatg----------------tctttcttctttt-------------tt-----tccca-ccAATG---TTCTCGTCTAGCAGCTT-TCT-----------------CCTCCCGTCG-CTCGGAATAGTCGTCTCTC
i caeRem4.Crem_Contig15 I 2591 C 0
s caeSp111.Scaffold582    331427 124 +   484378 tttgatccTGAGACTCCATtatt----------------cctttcttcttctcttctcttttttcttcttcttccca-cCAATGTTCTTCTCGACTAGAAGCTT-TCTcccttcctcc-------tccccaatCG------AATCGACGTCTCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3480443 100 -  4147112 CCCAATGCCCGAACTCCATTatg----------------tctttcttcttct-------------ttttttttccca-ccAATG---TTCTCGACTAGCGGCTT-TCTTTC---------------CCCCATTCG------AATCGTCGTCTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213   607438 10652 +   720316 I

a score=78697.000000
s ce10.chrX              2802594 199 + 17718866 TTCCGCTCTGTTTCTCC----C--CCCAGTTGCCACCTCCCGTCTCTTGTGTCTTGCGCCCTTCTCGTTTGTATTGCCTTCACCC---TCGCCTCC-------TCCCTCCATTACACCAC----GAAAATGTTTCGTAGCAGTGCTACTACTACTACTACTTCTACTTTCTCA------------------------------ATC---------------TAGCGTTCTT------GA----------TATTC----------TGATATCATCTGATCTAGGACAGTAT-----------------------
s cb4.chrX              17556071 244 - 21540570 TTCCGCTCTGTTTCTCCGCACTCGCCCAGTTGCCACCTCGCATCCCTCGTTTCGC---CCCATCTTGTTCGCATTTTCTGCCCCCGCACCCTTTTCGCCCCGTTTCTTCCATTACACCACCacagaaaatgtttcattGCACTACTACT-------------CGtcttcttcatagtctcttcttcttctttttcttcttcttatc---------------cctAAGTAGC-----CGTCTCATCAATATCTTC----------TGATAATATCGGTTCAGGGACAACCA-----------------------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig15   309996 196 -  1794024 TTCCGCTCTGTTTCTCCTCCCT--CCCAGTTGCCACctcccttctctcttttcttgcGCCCTTCTTGTTCGTACGGCCTTCACCC---TCTTTTcccccccATTGCCGCCATTACaccac----aaaaatgtttcactgCACTACTACT---------------TCCCCTTAA------------------------------ATC---------------CGGTGGTAGT-----CGC----------TTTCC----------TGATAGTATCAGTTCAAGGACAGAAA-----------------------
i caeRem4.Crem_Contig15 C 0 I 26
s caeSp111.Scaffold582    331551 195 +   484378 TTCCGCTCTGTTTCTCC-CTCT--CCCAGTTGCCACCTCCCATCTCTCGTTTCTTGCGCCCTTCTTGTTCGTATTCCCTTCACCC---TCTTTACCCCCGTTTTCCCCCCATTACACCAC-----GAAATGTTTCCCTGCACTACTACT-------------TTTCGCCTTCT------------------------------ATC---------------CGGTGGTCGT------GG----------TTTCC----------TGATAATATCTGTTCAAGGGCAAACC-----------------------
i caeSp111.Scaffold582  C 0 I 20
s caePb3.Scfld02_0       3480543 194 -  4147112 TTCCGCTCTGTTTCTCC---CT--CCCAGTTGCCACCTCCCATCTCTCGTTTCTTGCGCCCTTCTTGTTCGTATTGCCTTCACCC---TTCTTCTCCCCCGTTTCCTTCCATTACACCAC-----AAAATGTTTCACTGAACTACTTCT-------------TTCC-TCATCT------------------------------ATC---------------CTGTAGCAGTAACGTCGG----------TTTCC----------TGATAGTATCGGTTCAAGGGCA---------------------------
i caePb3.Scfld02_0      C 0 I 85
s caeJap4.Scaffold18213   618090 228 +   720316 TTCCGCTCTGTT------CTGT--TCTGGTCTGTTCCTCATGTCTCTC--CTCTTGCACCCTTTCCGCTCTCATAG-----GCCC---TCCTCCACCCC----TTTCCGCATTACACCAG----CCCAATGTTTC-CCACACTACTACT-------------TTCTCCTCTCA------------------------------ATCGCTTCTTCCGGACCTCTGAACCATC-----CGT----------TCTCCGATTGCTACTTGATGATATCGTCTCAAGGGCAAATTGGTTATTATCCTCTGGTTAGTGT
i caeJap4.Scaffold18213 I 10652 C 0

a score=-15149.000000
s ce10.chrX              2802793 33 + 17718866 TTCAAAACTTTT----------------------------AAGTGGGGTACGCTAAGGGTT---------
s cb4.chrX              17556329 45 - 21540570 ttctccaattttctt-----------gGCCAGC-----CGAATTAGTCCGCACGGAAGAAT---------
i cb4.chrX              I 14 I 10
s caeRem4.Crem_Contig15   310218 54 -  1794024 TTCaccatttttctt-----ctgatgGTCTAACCA--TCAAATTATTATGGACGAATGAAT---------
i caeRem4.Crem_Contig15 I 26 I 10
s caeSp111.Scaffold582    331766 49 +   484378 CtaacctcttttttttcttctttaattTCTGGT-----GAAATTTGC-------AATTAAt---------
i caeSp111.Scaffold582  I 20 I 13
s caeJap4.Scaffold18213   618318 48 +   720316 ----------------------TACTGCCTTATTAATTGGCGTGTGTGTGCATAGATAGTTTTAAAAGTC
i caeJap4.Scaffold18213 C 0 I 18
e caePb3.Scfld02_0       3480737 85 -  4147112 I

a score=27211.000000
s ce10.chrX              2802826 161 + 17718866 AATAA-------CATA---GTACACCAAAATTGACCAC--------------TGGCCC--ATTTTATAATAAATC--------AAACAGTGAAAG-CATCATATTAC-----------TTTGT------------GTAC-----CTCCCCACGTGCAT-------GGTATTCCGCCGACCTCCTGGTGTGTTTTCACGT--TTCCGACAGCTCATGTGATCTTTTTGGCG---AAT---
s cb4.chrX              17556384 196 - 21540570 GCTGA---------CA---GTGTATGTTTGACGAGGAC------------AATGGTCCTCACCTCATAGT---CC--------AAACAAATAAAA-CATTCGGATTCTCTTCTCCGTTCTTCTTTCGCCTTTCCTTCTTCACCATGCCTCACGTGAACTAATTCTGTCAATTCCCTGGCATCCCGGAGTGTTTTTAC-TTGTTCCGACAGCTCATGTGATCCTCTTGATGTGT------
i cb4.chrX              I 10 I 57
s caeRem4.Crem_Contig15   310282 177 -  1794024 AATAC---------CATATTTGTATACTAGTAGACAAT----------AGAGTAGTCCATACTTTGTATT---CC--------AAACAAAGAAAG-CATTCGATTTC-----------CTACACCCGACCCCCCATGAT-----TGTCTCACGTGTGTTACTTTCGTTATT---CCGCCCTCCTGGGGTGTTTTCAC-T--TTCCGACAGCTCATGTGATCTTTTTGGTG---------
i caeRem4.Crem_Contig15 I 10 C 0
s caeSp111.Scaffold582    331828 191 +   484378 aataatagaTGCAGTA---GTCCGTGTTTGTGAATGACACCACAA--AAGGTGTGTCCTTACCTTGTACT---CC--------AAACAATAGAAG-CATTCGGTTAC-----------TCTATTCCGGCCCCTCATGAT-----TGTCTCACGTGCGTTACTTTCGTTATT---CCGCCCTCCCGGGGTGTTTTCAC-T--TTCCGACAGCTCATGTGATCTTTTTGGTG---------
i caeSp111.Scaffold582  I 13 C 0
s caePb3.Scfld02_0       3480822 175 -  4147112 AATAA-------GGTA---GTCCTTGTTTGTAGAAGACATCACAA--TAGAGTTGTCCTTACCCTGTACT---CT--------AAACAATGGAAG-CATTCGGTT-------------TCCAT-------CCTCATGAT-----GGTCTCACGTGGACTACTTTCGTTATT---CCGCCCTCCCGGGGTGTTTTCAC-T--TTCCGACAGCTCATGTGATCTTTTTGGTG---------
i caePb3.Scfld02_0      I 85 C 0
s caeJap4.Scaffold18213   618384 159 +   720316 --------------------------------aaaaacgaaacaaacaAAGTCCACCTTtaatttggatt---tttctgtTTAATAAAGTTAAAGTCATCACAAT-------------TTTATAGATTCTACTTTCCTT-----TCTTTCACATGGACAA------TTATT---CCTGTCTA---------TTCCAT-T--GTTTGACAGCTCATGTGATCTTTTTGGCG------CAT
i caeJap4.Scaffold18213 I 18 C 0

a score=6970.000000
s ce10.chrX              2802987 34 + 17718866 ACTCTATACTCTACCCATGGTCACACATCTAGTC--
s caeRem4.Crem_Contig15   310459 26 -  1794024 ----TATACACTACCCATGGTCACACATCG------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    332019 26 +   484378 ----TATACTCTAACCATGGTCACACATct------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3480997 26 -  4147112 ----TATACTCAACCCATAGTCATTCACCC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213   618543 26 +   720316 ---ATACAGCCAGCC---GGTCACACAtct----cc
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17556580 57 - 21540570 I

a score=-1371.000000
s ce10.chrX              2803021 32 + 17718866 Atttctttctctttttc---------------------tctctttc---------tctcttc
s cb4.chrX              17556637 46 - 21540570 atttccttttttttttcaggtaattttGTACTGTGATTCATTTTCC----------------
i cb4.chrX              I 57 C 0
s caeRem4.Crem_Contig15   310485 21 -  1794024 ----CCCTCCCCTCCTC---------------------CCTTTTCC----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    332045 37 +   484378 ----cctccctctcctc---------------------cctcctcctGAAAACTTTATATcc
i caeSp111.Scaffold582  C 0 I 71
s caePb3.Scfld02_0       3481023 32 -  4147112 ----TCCCTTCCTCCCC---------------------TTTCCTCCAGAA-----TACATCC
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213   618569 32 +   720316 atctcctcctttctctt---------------------ctttttcc---------tcgcttt
i caeJap4.Scaffold18213 C 0 C 0

a score=-627.000000
s ce10.chrX              2803053 6 + 17718866 ----ctctcA
s cb4.chrX              17556683 6 - 21540570 ----TTCTCA
i cb4.chrX              C 0 I 229
s caeRem4.Crem_Contig15   310506 4 -  1794024 ----TTCC--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3481062 6 -  4147112 ----CTCCCG
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213   618601 8 +   720316 ctctttct--
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold582    332082 71 +   484378 I

a score=-4626.000000
s ce10.chrX              2803059 58 + 17718866 AT--CTTCCTGAATAATATAGT-------------TCTCAAAGTGTTAACATTCTGCAGGTGAT------------------------AAATAGCTT
s caeRem4.Crem_Contig15   310510 62 -  1794024 ----CATCCAGAATAACGATGTATCCGTCCAACGCCCTCATAGTGTAACGATTC--CAGGTAAT-----------------------------ATTC
i caeRem4.Crem_Contig15 C 0 I 25
s caePb3.Scfld02_0       3481068 70 -  4147112 AGTCTCTTTCGGATACTGTTGCGTCTGAACTGCAGTCTTTCAGTATTA-GTTTT--CAggcaat------------------------ccaaaattt
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18213   618609 80 +   720316 --ttcctcctGAATAACATAGC-----------GCACCTAAAGTATAA-CATTG--CAGTCAGTTGTTGACACACTCTCAATTCTTCTCCACAGTT-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17556689 229 - 21540570 I
e caeSp111.Scaffold582    332082 71 +   484378 I

a score=9292.000000
s ce10.chrX              2803117 66 + 17718866 AGAGGATTTGTAG------------CTATGGAAACAAGCGACTCTCAGCGG------AAAAGAAAATCCAGCGAT---CAAGGTATG
s caeRem4.Crem_Contig15   310597 75 -  1794024 AACAGAATTGTAATAGTTTCTGAAGCAATGG---CTGACCATCCATCAATG------AAAAGAAGGTCTAGCGAA---CAAGGCATG
i caeRem4.Crem_Contig15 I 25 C 0
s caeSp111.Scaffold582    332153 72 +   484378 ACAAGAATTGTCA------------CTATGGATACTATCGAACTGACACagggaagaaaacgaaaatcgaGTAGT---GAAGGCATG
i caeSp111.Scaffold582  I 71 I 34
s caePb3.Scfld02_0       3481144 66 -  4147112 ccgGAAATTGCTA------------CAATGGAAACATCCAATTTCCCACTG------AAACGGAAGTCTAGCGAT---GAAGGCATG
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   618689 67 +   720316 -----GTTAGTTG------------CTATGGAAATGATCGATAAACCGCTT---CGAAAGCGGAAACCTACCGATGAACAAGGCATG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17556689 229 - 21540570 I

a score=741.000000
s ce10.chrX              2803183 7 + 17718866 CGATTAT
s caeRem4.Crem_Contig15   310672 4 -  1794024 ---TTAT
i caeRem4.Crem_Contig15 C 0 I 11
s caePb3.Scfld02_0       3481210 4 -  4147112 ---TTGT
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18213   618756 7 +   720316 TGACTTT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17556689 229 - 21540570 I
e caeSp111.Scaffold582    332225 34 +   484378 I

a score=-2279.000000
s ce10.chrX              2803190 13 + 17718866 --------------------------CAAAAACATATCC----
s caeRem4.Crem_Contig15   310687 13 -  1794024 --------------------------CTAGAAAATCTCA----
i caeRem4.Crem_Contig15 I 11 C 0
s caeJap4.Scaffold18213   618763 43 +   720316 TTTCTGTTCATTTCACTTTCCCTGtctataaatatttaaaccc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3481214 18 -  4147112 I
e cb4.chrX              17556689 229 - 21540570 I
e caeSp111.Scaffold582    332225 34 +   484378 I

a score=-2154.000000
s ce10.chrX              2803203 11 + 17718866 --AACACAGGCTT
s caeRem4.Crem_Contig15   310700  7 -  1794024 ------TTGTCTA
i caeRem4.Crem_Contig15 C 0 I 4
s caePb3.Scfld02_0       3481232  5 -  4147112 --------AACGA
i caePb3.Scfld02_0      I 18 I 6
s caeJap4.Scaffold18213   618806 13 +   720316 ATTATATCGACTT
i caeJap4.Scaffold18213 C 0 I 10
e cb4.chrX              17556689 229 - 21540570 I
e caeSp111.Scaffold582    332225 34 +   484378 I

a score=10267.000000
s ce10.chrX              2803214 36 + 17718866 CTTCCAGAAGTTCGTGAAACGTTGCAAAAGTTTTTA
s caeRem4.Crem_Contig15   310711 36 -  1794024 TTTGCAGACATGGAagatcaaatacaaaaatatatt
i caeRem4.Crem_Contig15 I 4 I 2
s caeSp111.Scaffold582    332259 36 +   484378 ttttcagaagtaCGCGATACTCTgcaaatgtttttg
i caeSp111.Scaffold582  I 34 C 0
s caePb3.Scfld02_0       3481243 36 -  4147112 GTTTCAGAAGTACGAGATACTCTCCACCGGTTTATT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213   618829 36 +   720316 CTTTCAGAAGCACGTGAGACTCTTCATAAGTTTTTA
i caeJap4.Scaffold18213 I 10 C 0
e cb4.chrX              17556689 229 - 21540570 I

a score=-34101.000000
s ce10.chrX              2803250 131 + 17718866 TTAGCAAAGAAAAGAGCTC----------------GGACT---------------GAAAATCTGAATGACC-------------ACGGCTTAT------ATGGAGCGGGAATACA---AGGACCATCCACAAGCACTTTGAGC---ATGAACAGAAACACG----GGTTTCTCAGCTAGAAC---TCCATTACA-----
s cb4.chrX              17556918 188 - 21540570 TGTGCTCAGAATTAAGCCACTTCATCTTGAGATGCCAACTGCGCACTTTGACCACGATGACTTGAATGAGCGGCTCGACAAGTACAGTAGTAACAATACGGGGCGGAACGACTTCAGAGGGAATGACTTCAGAGGGAATGACTT-CCGAAGTAGCAGGAACACTGGCATCTATGGTGCTAA-----TCATTACG-----
i cb4.chrX              I 229 I 115
s caeRem4.Crem_Contig15   310749 127 -  1794024 --tgctaagaaaaaagcaa----------------aaact---------------gaaGACTTGAATTTGC-------------CGGGAGCTTTAAGTCACGGCAAA-----TTC----GGACCGAGCCCAAGTGCACTCAAT---CGAAATATGAAAGAT----GCATTTGTTTTGAGAA-----TCAACCCA-----
i caeRem4.Crem_Contig15 I 2 I 5
s caeSp111.Scaffold582    332295 132 +   484378 aaagcaaaaaaacaagcGA----------------GAGGT---------------GAAGAATTGAACAGAC-------------CCTCTTCAT------TTGGTGAATGTTCGTC---TGGACCCGCTCCAAACCCATTTAACAATAAAGACAAGGGACAA----GCGTTTATTGTTAGAA-----TTAGTCCA-----
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3481279 132 -  4147112 GAAGCTCGGAAGAAAGCGA----------------AAATT---------------GAGGAGACACAAATCC-------------CTGGAGCAT------ATGGTGAATGCTCTTC---TGGGCCTGCCTCAAAGGCACTTGAAGAcccaaacaaaaataaa----gcCTTCATTGTGAGAA-----TAAGTCCA-----
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213   618865 124 +   720316 ATATCGAAGAAACGAGGCA----------------CAGTA---------------GAGAATAACAATAAAA-------------CCAACTCGA------ACA----------TTC----------GCTACAA-CAGAAAGAGAAGCAAAAATCATAATGCT----GCCTTGAAAATGGGACCTCTTCAACTCCAGCTGC
i caeJap4.Scaffold18213 C 0 C 0

a score=1858.000000
s ce10.chrX              2803381 70 + 17718866 TCTTG---------------ACCTAC------CGCACTTTAATCACCAGGACTTGAACGTCCGATTGGATATGCTTGGCACTGAAAAGCAT
s caeRem4.Crem_Contig15   310881 76 -  1794024 TCTCGACTTGCCAACTTCTCATCTGCCAACTGCGCATTTCAATCACAATGAGTTGAACTCCCGATTGAAT---------------AGACAC
i caeRem4.Crem_Contig15 I 5 I 16
s caeSp111.Scaffold582    332432 61 +   484378 TCTGG---------------ATTTGCCACGTGCGCACTTTGACCACAGCGaattgaattccaaattGACT---------------GATTAC
i caeSp111.Scaffold582  I 5 I 4
s caePb3.Scfld02_0       3481416 61 -  4147112 CATAG---------------AACTGCCAACTGCTCAATTTAACCATAAAGAATTGAATAATAGGTTGAAT---------------GATTAT
i caePb3.Scfld02_0      I 5 I 4
s caeJap4.Scaffold18213   618989 63 +   720316 --------------------------CGACAATGCAACTCAATGCGGAAGAGATGAATTTTCGACTTCAA--ACTTTCCAACAGCAAGCGC
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              17557106 115 - 21540570 I

a score=55659.000000
s ce10.chrX              2803451 141 + 17718866 TTAGATAAACAG--GAAATTGGCTATCGCCAGCAATTTCTTCTTCAGAACATGTCGGT---TGACGATGACAATGAGCCTAGGAAATTATTCACTTTGTACGACATAAAAGATGACGAAACATCAAAAAGTGCTTTAGAAGTGAGT
s cb4.chrX              17557221 127 - 21540570 TG------------GAAATCGGCCGA-------TTTATCTTCTGCAGAACTTGTCGGTTTTTGACGATGAGAGTGAATTCaggaaatatttcaatttacTAGATCTCAAAAGTGATGAAACGTCGAAATGTGCAGCAGAGGTAATT
i cb4.chrX              I 115 I 42
s caeRem4.Crem_Contig15   310973 146 -  1794024 TGACTTTGTCTGAAGAGTTCGGTGGAAGAgccccattttttcttcagaatatgTCTTATGTTGATGATGACAACGAGCCTCGGAAACTTTTCACTTTGTATGATATTAAGAATGATGAGACTTCAAAAAGTGCTTTAGATGTGAGT
i caeRem4.Crem_Contig15 I 16 I 51
s caeSp111.Scaffold582    332497 143 +   484378 TGACGAAATCTGAAGACACTGAACGT---CTGCCGTTCTTTTTACAAAATATGTCGGTTTGTGACGACGACAATGAACCGAGAATTATGTTCACTTTGTATGATATCAAAGACGACTATTCTTCAAAACGCGCACTGACCGTAATT
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3481481 143 -  4147112 TGAGGAAATCTGAAGATAATGACCGT---CATCCATTCTTCCTCCAAAACATGTCATTCGATGATGACGACAATGAGCCACGAAGATTATTCACTTTGTACGACATAAAAAATGACGAtacttcaaaaagtgctcTAGATGTGAGT
i caePb3.Scfld02_0      I 4 I 92
s caeJap4.Scaffold18213   619052 131 +   720316 ------AACGAGATGCTTTTGCCCGT---CATCAGGCTTACATTCAAAGCATATA------TGATGAGGATGAAGAGCCACAAAAGCTATTCACATTGTATGATATTAAAAATGATGAAACTTCGAAAACGGCGCTAGATGTGAGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-3011.000000
s ce10.chrX              2803592  9 + 17718866 CA-------CGTGAAA
s cb4.chrX              17557390 15 - 21540570 CACGGCG-TTGTAGAA
i cb4.chrX              I 42 C 0
s caeSp111.Scaffold582    332640  7 +   484378 ---------cacaaaa
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   619183  9 +   720316 -----CGTTTGCAA--
i caeJap4.Scaffold18213 C 0 I 67
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=156.000000
s ce10.chrX              2803601 3 + 17718866 ACA
s cb4.chrX              17557405 3 - 21540570 TTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    332647 3 +   484378 aca
i caeSp111.Scaffold582  C 0 I 10
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=564.000000
s ce10.chrX              2803604 25 + 17718866 TGCAATACTAATACAGTGTGTTTTA
s cb4.chrX              17557408 25 - 21540570 GAGAAAACGAGTCAAATGTGTTCTA
i cb4.chrX              C 0 I 46
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I
e caeSp111.Scaffold582    332650 10 +   484378 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=0.000000
s ce10.chrX              2803629 16 + 17718866 TTTTTTCATTTTCATC
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I
e cb4.chrX              17557433 46 - 21540570 I
e caeSp111.Scaffold582    332650 10 +   484378 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=807.000000
s ce10.chrX              2803645 17 + 17718866 CTTTACAATCCTCAGGG
s cb4.chrX              17557479 17 - 21540570 ctttgaaattctcagat
i cb4.chrX              I 46 I 210
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I
e caeSp111.Scaffold582    332650 10 +   484378 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=0.000000
s ce10.chrX              2803662 183 + 17718866 AGGGCGCTTTCATACGAAATTTCGAATAGTTGAGAAGCAAGTTAATAAATGAATaaatggtcccgccacctaccacccaatgagtttaaacccttttaatcaatgggtggcgcatggcaagaccatttcgcataaatgcgaccttttgaagtcgtagaggaagaacatacaccgcaGCTAATT
e caePb3.Scfld02_0       3481624  92 -  4147112 I
e caeJap4.Scaffold18213   619192  67 +   720316 I
e cb4.chrX              17557496 210 - 21540570 I
e caeSp111.Scaffold582    332650  10 +   484378 I
e caeRem4.Crem_Contig15   311119  51 -  1794024 I

a score=-1426.000000
s ce10.chrX              2803845 353 + 17718866 ACTGTAATCATTAGACTGTTTTTTGAAAACTGAATTTTTACAAACTGCCcg-----tagtgccagactgtccca---------ttacggtttgatctacaaaaaatgcggcaattttatgcccccatgcaaaa-------tcagttgaaaacactgcgtcacttct-----cccgcatttttagtagatcaacgtagatcaatccgaaa-----------cgagacactctgacacaacgtgA--AACTGCCAAA-----ACATTCCATAACAT------------ATCACCCTAAATTTTGAAACTGAATGCCCATTAACGATACGATTTTTCTAAAACTTTTTTGTATCATTTCAAAAGT--CATATCTTGATAAGTTGAAACAAGTCAACCTAAGTTTCACCTGTGAT
s cb4.chrX              17557706 342 - 21540570 ACTGAGAAAATTACGgtacctttaaaaa--------tttacgATCC-CTCGAAAAATAGTG-------GTCTCACGAAAAGAATTTCGGTTCGAT-------------GAGAAATTTTTAGTCCCATGAAAAAATTGGtctcattaaaaaattccggcccatttctaattttacgctctttcaaaaaaaaagcggaaaataggctaaaaactTACGGTTATGGGGTTCTTT---------TGATTATCtcccaaatttaaaaatttcttagCACTAGCAGCTCTAAATAGCTCTAAATTTTAGGATTACGT--------------cgaaatcattaaaatttttg------atttctaaattttcagatttgcatAGAGT-----------ATCTCATTTCCATTCACTCT
i cb4.chrX              I 210 C 0
e caePb3.Scfld02_0       3481624  92 -  4147112 I
e caeJap4.Scaffold18213   619192  67 +   720316 I
e caeSp111.Scaffold582    332650  10 +   484378 I
e caeRem4.Crem_Contig15   311119  51 -  1794024 I

a score=-1256.000000
s ce10.chrX              2804198 12 + 17718866 GGAAAAATTTTC-
s cb4.chrX              17558048  7 - 21540570 -----AACCTAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    332660 12 +   484378 -gggaaaattgat
i caeSp111.Scaffold582  I 10 C 0
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I
e caeRem4.Crem_Contig15   311119 51 -  1794024 I

a score=112.000000
s ce10.chrX              2804210 4 + 17718866 ACGA
s cb4.chrX              17558055 4 - 21540570 ACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   311170 4 -  1794024 ACGA
i caeRem4.Crem_Contig15 I 51 C 0
s caeSp111.Scaffold582    332672 3 +   484378 -aaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3481624 92 -  4147112 I
e caeJap4.Scaffold18213   619192 67 +   720316 I

a score=910.000000
s ce10.chrX              2804214 1 + 17718866 T
s cb4.chrX              17558059 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   311174 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    332675 1 +   484378 t
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   619259 1 +   720316 T
i caeJap4.Scaffold18213 I 67 C 0
e caePb3.Scfld02_0       3481624 92 -  4147112 I

a score=261969.000000
s ce10.chrX              2804215 378 + 17718866 TTCAGGCAAAACGCCGGCTACGATTTACCAATGTTCATGCCCTAATTTGCCCACAAGAAAAAATGTTCCTGACCACTGCTTGCGACTACTTTCTTGCAATTTATGACGAGCTGATAGATTATGTTGAAGCAATTGGAGAGTTGGTTAGTTTTCGG-TCAACCAACCTATCCTCAAACATTC------A-----CTACC--TTATTGTAGAGAAATAAGCAAATAATTGTCGAGCACTTCTACTACAAGTTGTTTATGCACACTTTGAAAATGTTCTACTATACTGACAAAGGATGGAGGTTCAATTTGGAGTTTGATGAGTTTTTCAGCGGATACCTGCGGAAATACAGAGAACCTATTATCAACCAGATGACGCGAAACTGGAATAATGGT
s cb4.chrX              17558060 371 - 21540570 TCCAGGCAAGACGACGTCTCCGTATGACAAATGTGCACCATCTGATCTGCCCACAAGAGAAAATGTTCCTAACCACTGCGTGCGACTATTTCGGTGCTGATTATGATGATTTGATAGACTATATCGAGTCTGTTGGAGAGAGCGTTAGTTTACGA------------------AAGCTCTCACAACGAAACC-CCTTG--TTTTTCTAGCGAGATAAGCAAATAATCGTCGATCACAGCTACTACAAACTGTTTATgcacactttgaaaatgttctacTATACTGACAAGGGCTGGCGGTTTCATCTCGAATTCGACGAGTTCTTCTGCGGACATTTGCGGAAACATCGAGAGCCCATCATTGAGCAAATGACTACAAATTATAATAATGGT
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig15   311175 375 -  1794024 TTCAGGCCAAACGTCGTCTCAGATACACCAACGTCAATCTTCTAATCTGCCCGCAAGAGAAGATGTTTTTGACGACAGCATGTGACTACTTTCAAGCCATTTATGATGAGTTGATAGAATATGTGGAAGCAATAGGGGAGTTGGTTAGTTGACAACATA------CACCTCTTGAACTCTC----CGA-----CCTTG--TTATTCTAGCGAAATAAGCAAATAATTGTCGATCACTCCTACTACAAGTTGTATATGCacactttgaaaatgttctacTACACTGACAAGGGTTGGCGCTTTGTTGTTGAATTCGATGAGTTCTTTAGCGGATATATGCGGAAGTACAAGGAGCCAATAGTGAACCAAATGACTCAGAATTGGAACAACGGT
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    332676 373 +   484378 ttaAGGCGAAACGTCGTTTACGTTATACAAATGTTCATGGCCTTATCTGTcctcaagaaaaaatgttcctGACCACTGCATGTGATTATTTTCTTGCTGACTATGATGATTTGATAGATTACATCGATGCAATTGGAGAGATGGTAAGTTGGAAA--CA-----------CTCGAACTTTT----TGACTCCTAATCT--ATATTCTAGCGAAATAAGCAAATAATCGTCGAGCACTGCTACTTTAAGTTGTTTATGCacactttgaaaatgttctaCTACACTGACAAGGGTTGGCGATTCAACATTGAATTTGATGAGTTCTTCAGCGGATATCTAAGAAAGTATCGAGAGCCGATTATCGAGAGAATGCAGCAGAATTGGAATAACGGT
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3481716 374 -  4147112 TTTAGGCCAAACGTCGTCTCCGTTATACCAATGTGCATGGATTAATCTGCCCACAAGAGAAGATGTTTCTGACAACGGCATGTGATTATTTCCTTGCTGACTATGATGATTTGATAGATTATATAGATGCTATCGGGGAAATGGTAGGTTGAAAA-GCA------CTTGTCTCAAACTCAT----CGA-----GCTTG--TTATTCTAGCGAAATAAGCAAATAATCGTCGAGCACTGCTACTACAAGTTGTTTATgcacactttgaaaatgttctacTACACAGACAAGGGATGGCGTTTCAATCTTGAGTTTGATGAATTCTTCAGTGGATATTTGAGGAAATACAGAGAGCCCATCATtaatcaaatgaaaacaaactaTAACAATGGT
i caePb3.Scfld02_0      I 92 I 632
s caeJap4.Scaffold18213   619260 376 +   720316 TCTAGGCAAAACGACGTCTTCGATTCACCAACATTCATTCACTGATTGTCCCTGAAGAGAAACTTTTTCTGATCACATGTTGTGACCATTTCCTAGCTTTATACGAGGACCTTATAGACTATGTGGTAGCCATAGGACAATTGGTTTGTTGGCAA-ATA---AAACAACactctatttttc------------ttttgactTCTTGCAGCGGAATAAGCAAATAATTGTCGAGCACTACTACTACAAATTGTTTATGCacactttaaaaatgttttattacACGGACAAAGGATGGCGATTTGAAGTTGACATGGATGAGTTTTTCAGCGGATTCTTGCGTAAATACCGAGAACCGATCATTGGCAAAATGAGAGATGCTTGGAATAAAGGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-6605.000000
s ce10.chrX              2804593 42 + 17718866 T----TTGAACTGAAACTGTTAGATTGAGTT----------TTTCATGAACTTTAT------
s caeRem4.Crem_Contig15   311562 56 -  1794024 CGAAACGGATATGAAATATACAGAATTGGTTGAgactacattttcaaaaataatgt------
i caeRem4.Crem_Contig15 I 12 I 4
s caeSp111.Scaffold582    333052 33 +   484378 C----CAGAAATTAATTGCTTTGAAtcaattg---------tttct----------------
i caeSp111.Scaffold582  I 3 C 0
s caeJap4.Scaffold18213   619636 51 +   720316 -------GATTATAATATAAcgaaattaattcatttt----tttcaaaactttttgagtttt
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3482090 632 -  4147112 I
e cb4.chrX              17558431 36 - 21540570 I

a score=7440.000000
s ce10.chrX              2804635 41 + 17718866 TTTTCAGCAAAGAAAGCTGCCCGTGAAGCTGCAGCAAGAAA
s cb4.chrX              17558467 37 - 21540570 ttttcagctagaaaagCTGCTCAAGAA----CATCGAGAAA
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig15   311622 26 -  1794024 ATTTCAGCCAAGAAGG---------------CAGCAAGGGA
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    333085 35 +   484378 ctttcagcAAAGAAGGCGGCTGCAG------CAGCAAGACA
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold18213   619687 36 +   720316 ttttcagc---aaaagcTCAAAGAGAAGc--taacaaaaaa
i caeJap4.Scaffold18213 C 0 N 0
e caePb3.Scfld02_0       3482090 632 -  4147112 I

a score=186.000000
s ce10.chrX              2804676 2 + 17718866 TG
s cb4.chrX              17558504 2 - 21540570 TG
i cb4.chrX              C 0 I 269
s caeRem4.Crem_Contig15   311648 2 -  1794024 GG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    333120 2 +   484378 AG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3482090 632 -  4147112 I

a score=-13158.000000
s ce10.chrX              2804678 333 + 17718866 CGGCCTCGCTAACGCTACAAATTGATGAGCAATGATATTTTCAAACATCTGATACCAATCTGTACATTTCGTATAAAA-TACCTGCCCCAAAAATGTTAACCATTTTG-----TGAAGTTTGCGTGACCCTTTTTGTCTATATAAGGCTTAGGACTAGTTTTTTAAAGCCTGATATTTCAAGTAAAGTTCACGTTCCAATTAAATTATCATTAAAAAAGTGAATGGATTATGTTATATTTTTGGCGCAGGTAT-ACTACATAACTACCTGAATATATT--GACCTCTTATCGAAATTAATACTTTATGAATACCTTATCATTACTGCAAATAAACAAAACAA-----
s caeRem4.Crem_Contig15   311650 197 -  1794024 CAGC-------------------------------------CAAGC---------------------------------AACTAGCTCTTAAGA---GGGCTGCTTTGGAGGTTGAAGCT--GATGAAG-------------------------------TTTGAATGTATTATCTCT--------AatcattttccgttttgaCAACGATTAATATTG---------------CTTTTCTTACTGCATGCATGTCTGGATAATGAGCTTGatataataaaacattttt-----at----------------tttcaactagagatcaaagaaaaataacaaaacag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    333122 208 +   484378 CAGC------------------------------------TCAAGC----------------------CCGTATGACGGAACTTGCTATCAAAAC-TGATCaagtttaaaaattggaTCTCGCATTCac-------------------------------attcatttccttttctctca---taaaatcaatttccgCTTTG-CATTGCATAATAAAA---------------ATTGGCTTGGcac-----tgaatgaaaaataatcacAATTTATT----CGTTTCTTTGAGAT----------------CTTTGACAACGGAACAAAGATAAATAGccc-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3482090 632 -  4147112 I
e cb4.chrX              17558506 269 - 21540570 I

a score=-9568.000000
s ce10.chrX              2805011  83 + 17718866 AAACAAAAACATTTGAAAATGAAATAAAACAAAAAAC-------------TTAATTGAATTTAAAATGCT------AAGAAGAGCT----TTCGTCCTT------------------CTCAAAT-
s cb4.chrX              17558775 107 - 21540570 AGAAAagagagatgaaaaagaagagataacAAGTAACTTATTATg-----ataggaaaaattgaatcagc----AAGAGAGTGGCTCGGGTTGTTCGTCATTGAAATC---------CTCGGAAT
i cb4.chrX              I 269 C 0
s caeRem4.Crem_Contig15   311847  85 -  1794024 -aaacagaacactggaaacaaaaataaaac-----gcATATGATGCGCATACAATGAAAATT--------------AAGAGGAACC----TTTACCCTCAT----------------CTGGGAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    333330  92 +   484378 -------------------aaataaaaaat-----acgtTCAATGC----ATGATGAAATGTTAACTAATTTTAACACACGGGGTT----TTCCTCTTCACTTTTGTCCACTATTTTCTCGAAC-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3482090 632 -  4147112 I

a score=36362.000000
s ce10.chrX              2805094 170 + 17718866 AACTTTCCAGATTGATATTGCAGAAGCAAAGTTTGTTCGAACTCAGCTTCTGGGAGTGTGTCATATCGCATGTAATTCATGATCACGTCCGAGATAGAGGGTCCGCATTTTTCGAAAAGAAGTTGATACATTTCAGTGTAATGAGCAGCTTG------CGGTTGAGTAGACTGGAA
s cb4.chrX              17558882 169 - 21540570 AATTTCCATGC-TGGTACTGGATGAGCATGGTTCGCTCGAATTCGGCTTCCGGGAGATGCTCGAACGGTATGAAGCCAGCGATGACGTGAGCAATTTTGAAGCTGAGATTTTGTTGGAAGTATTTATACATCTCGATGTAGTTTTCAGCATG------ATGATGCTTAGACTGAAA
i cb4.chrX              C 0 I 6351
s caeRem4.Crem_Contig15   311932 170 -  1794024 AATTTCCCAGCTTGATACTGTAACAACATAGTGGTTTCAAATTCAGCATTCGGAAGATTTTCATATGGCATGTATCCAACAATTATGTTTGCGATAGTGTATCCACAGTTGGCCAGGAAATACTTATACATGTTCACATAGTGTTGGGCTTG------AGAGTGGTCAGACTGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    333422 170 +   484378 ATTCTTCCCGACTGATACTGCATAAGCATCGTTTGCTCGAACTCGGCATTTGGAAGATATTCGTACGGTAAATAGCCGCAAATAACATTTGCGATTCCGCTATTTATGTTCCGACTGAAGTACTGATACATTTCGACGAAATGAGGAGCTTGTGGAGCagaactctgaaa------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3482722 164 -  4147112 AATTTTCCAGCCTGATATCGAAGAAGCAGAGTATGTTCAAAATTGGCGTTCGGGAGGTACTCATATGGGACAAATCCAGAAATGATTTGTGCAATTGAAGGCGTCATATTCTCCAAAAAGTATGCGTACATGTCGACGTAGTAACCAGCTTG------AATACTCTTAGA------
i caePb3.Scfld02_0      I 632 C 0

a score=-624.000000
s ce10.chrX              2805264 17 + 17718866 --TTTGATTATTGAATTAT
s caeRem4.Crem_Contig15   312102 17 -  1794024 acagagaatga--aaatat
i caeRem4.Crem_Contig15 C 0 I 2210
s caeSp111.Scaffold582    333592 18 +   484378 -atattaataatGAAATAT
i caeSp111.Scaffold582  C 0 I 1407
s caePb3.Scfld02_0       3482886 18 -  4147112 -CTGGAAATTAGGAAATGT
i caePb3.Scfld02_0      C 0 I 6
e cb4.chrX              17559051 6351 - 21540570 I

a score=191.000000
s ce10.chrX              2805281 2 + 17718866 TG
s caePb3.Scfld02_0       3482910 2 -  4147112 TG
i caePb3.Scfld02_0      I 6 I 137
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    333610 1407 +   484378 I
e caeRem4.Crem_Contig15   312119 2210 -  1794024 I

a score=0.000000
s ce10.chrX              2805283 555 + 17718866  
e caePb3.Scfld02_0       3482912 137 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    333610 1407 +   484378 I
e caeRem4.Crem_Contig15   312119 2210 -  1794024 I

a score=5366.000000
s ce10.chrX              2805838 275 + 17718866 AATTTTATTTTACCTTTTTCCAGTAATCCAACTTTCTGACAATGTGCGCTTTTACAACTGTCA-ACTCGTCAGTTTTGGTAAACTGTCGGTTCTTTTCTGGCGATTCTGAAGACCATTCCAGCTTTTCCGTCAGTTCTCGAATTCGATCAATGAATAATTGGTTGTCTGAAAATGTTCTTTTCTTATAAATCGATTTAATTACAATACAAATACCGCTTACATTTTTCTTCAACTCTTGATCTTATAGATTCCT-----TACAATTTCCATAAAAATTTGT
s caePb3.Scfld02_0       3483049 252 -  4147112 AGTTTTTTCTTACCTTTTTCCAGAGGGATAACTTCTTGATTACAAATGCTATTGC-TTTATCATGCTGCTCACTATCAGttaacggt---tttttttct---aattc---------ttccaATTCCTCATTCAATTCACGAATTTGATCCATACATATtttgttatctgaaaattgatgttactttt-------tttAAGCAGCACATAACTGCTACTTACACTTTTCTTCAGCACTGTA------AGATTCGTGAATATACGCTTTCAATATGTCTTTGT
i caePb3.Scfld02_0      I 137 I 2618
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    333610 1407 +   484378 I
e caeRem4.Crem_Contig15   312119 2210 -  1794024 I

a score=0.000000
s ce10.chrX              2806113 847 + 17718866  
e caePb3.Scfld02_0       3483301 2618 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    333610 1407 +   484378 I
e caeRem4.Crem_Contig15   312119 2210 -  1794024 I

a score=91.000000
s ce10.chrX              2806960 1 + 17718866 A
s caeSp111.Scaffold582    335017 1 +   484378 A
i caeSp111.Scaffold582  I 1407 C 0
e caePb3.Scfld02_0       3483301 2618 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeRem4.Crem_Contig15   312119 2210 -  1794024 I

a score=108.000000
s ce10.chrX              2806961 90 + 17718866 ACTCACGTTGAAGTTGTCGACTCTCTATCCGTGATTTTTGCTTGATTTGCTGCAATACTGACATCTCCGACATGCTCATTTTGATCATTC
s caeRem4.Crem_Contig15   314329 81 -  1794024 ACTTACACAGAACTCGGTGACTCAACATTGGTAGCCTTCACATgttctttctcaat-----ttctttct----gtTCAGCTGTCACCCTC
i caeRem4.Crem_Contig15 I 2210 C 0
s caeSp111.Scaffold582    335018 81 +   484378 ACTGACGTGGAAGTTGTAGAACTGCCATCGATGCTTTTGGT---TTCCGAGTCAAC-----TTTCTTTGGAa-gttcatcatttttcttg
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3483301 2618 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I

a score=32945.000000
s ce10.chrX              2807051 355 + 17718866 TCAATCATTTTAGCGTACAAAACAAGTTTCTCATAATCATGTAAAGCGTCTTTGTTTCCTGACAATAGCAATAAGAACAGTGTGTGACGCTGCTCATTTTCCACTTTCCTATACGTTTTCCAAGCCTTCACTACTGTTTCGAGATATTCAATGCGGTTTTTGATTTCTTGGTCACACAGAACTGAAA-----AAATAC------------ACATGTGTTTGAAAAAAAATATATCATT-------------TTACCTTCTAAAGAATGAGAGTCATAGCTTTTAACTTTTCGGACCAACTCTGATGAAACCTCCAGTTTGATTTGGAT-------------------GCACAT-----------------TCGTCAAAAACAACAAAACGCAAACGTAGAAATATTAAAA-------GGACAAAGCAA-----
s caeRem4.Crem_Contig15   314410 390 -  1794024 TCCAACATTTTTGGGTACAGCACCAACTTCTCGTAATCGCGGAGGGCATCTTCGTTATCGGTTTTTAGCATCAGGAAGAGAATGCGGCTATGTTCTTTTTTCACGTTCTTGTAGGTCTTCCACCCTTTGAGAACAGTCTCCAGgtaaaaaacatgtttttcaatttctttttcgcaTTGTTCTAAAA---TGAGATGTTTAGAGCgaacaataaaattttgaaaataaaaaa-------------------ttacctTGCAGAGATCGATCATTAaggctcttcatttttgtaacgAGATCCTGTGGAACTTCCATCTTAATTCTGACTGTCATGGTTGCCTGCAATAACCGT-----------------actataaaaataacaaaagagAGGCACTGTG----AGAAACGGAGATTaagaaaatggaggaa
i caeRem4.Crem_Contig15 C 0 I 18
s caeSp111.Scaffold582    335099 366 +   484378 tctaCAACTTTTGGGTACAAAACAAGACGTTCGTAATCGTGAAGTGGATTTTTGTTCTCCGCCTTCAACattaagaaaagaagacgtcggTGTTCCTCTTTTACTTTCTTATAAGTTTTCCATCCTTGAAGGACGGTCTCCAAGTAGTAGATACGTTTAGCTACTTCGGCGTCACACAAGGCTGAAA---TTGCATGC------------ATATCTCTATGGAAACAAACACG--------GAAG------TTACCTGCGAGACTCGCATCGTCCAATGTTTCCATCCGCTTGATCATCTCCGGTGGCACTTCCATACTGATTTTGACTGTCATGGCTGC-------AAGCGTTAGAGAATCTTGTTGTCTTCTT---------------GAAGCAGAGtg----tgaaa-------tgagaaatcaa-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3485919 390 -  4147112 TCCACAATTTTGGGGAACAGTATACATTTTTCATAGTCATGAAGACCATCTTTGTTATCCGACATCAGCAGCAAATATAGTATACGGCTGTGGTCTTCTTTGACGTGTTTGAATGTTTTCCATCCATTGAGGATGGTCTCCAAGTACTTCacacgtttttcaatttcaatgtcACACTTGGCTGAAAACGTTAAATGC------------ACATAAATTTGATAAAAGAAAGGTTTATTATGAATTAATGCTTACCTGCTACAGTTGCAGTGTCCAACTTTTTCAGTCGTTTCACTAGGTCCTTTTGCACTTGTAGTGTTAACTTCATTGTTTAGGCTG--------AAAcgt-------tctcgttttttttccagttccaaaGTACAAGAAGTCAAgtg----tgaaa-------aaggaaaacaa-----
i caePb3.Scfld02_0      I 2618 C 0
e cb4.chrX              17559051 6351 - 21540570 I

a score=1094.000000
s ce10.chrX              2807406 16 + 17718866 TTCTTCTATTCGGGAC
s caeSp111.Scaffold582    335465 16 +   484378 tCTTCTTATTCAGGGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3486309 16 -  4147112 tctTGTTTTCCGAAGC
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17559051 6351 - 21540570 I
e caeRem4.Crem_Contig15   314800 18 -  1794024 I

a score=26403.000000
s ce10.chrX              2807422 192 + 17718866 GACGGTTCTAGAAGGGTGCACAAGAA-GAG-TTCATTGAGACGCAGCGTGTTCGAGGAGAG--CAGAAGACGGAGTCACCACACGTC--GTTTCTTCAGAATACGGCGTCGCTTCATATGTCCCTAA--------------GCATAGAGAGCATGAGGAATTAAGAGAAAATGA-GCACGAGTA-------GTATGCTTTTGCTTGGAGCATGTGAGCAC
s caeRem4.Crem_Contig15   314818 209 -  1794024 AGCGGACTTAAAAGGGTGCACAAAAACAAGATATATTGAGACGCAGCgagatgaagaaaattgaagaggaAAGAGTcacaacac-aa--ttttcttcaaaatacgGCGTCGTTACATATGGCCCAAA----AGAAGGGC--GCTACTAGAGACCACATCAATATAAGAGAGGAT-GCACAAAAA-GTATGTGTATGCTTTTGCTTGAAGCAAGTGAGCAC
i caeRem4.Crem_Contig15 I 18 C 0
s caeSp111.Scaffold582    335481 192 +   484378 ---CGGATTCAAAGGGTGCACGAAAATGAG-TATATCGAGACGCAGCGcgatgaag---------aaagaaagagtcAGCGCAC-TC--TCCCCCTCAGA----AGCTTCGCTTCATATGGGGCGAAGAgcagaaattcaagaaaaaagaaagagagaacaGAGGATAGAGTGC-GCACAAGGA-------GTATGCTTCGACTAAGAGCAAGCGAGCAC
i caeSp111.Scaffold582  C 0 I 2103
s caePb3.Scfld02_0       3486325 210 -  4147112 ---GAGAGCAGGGGGGcgctcaaaaatgaa-aacatgcAGACGCAGCGTGTTGAAGAAAAT--GTAAAGACGGAGCCAGCACac-tcctttttcttcagaattcagCTTCGCTTTATAAGGcccgaa-aacagaaaatc--ggTGAGCGAAAGAGAACGGGAATGGCAGAGAGCAGGACGGGGGAGTATATGTATGCTTCAACGAGAAGCAAGTGAGCAC
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17559051 6351 - 21540570 I

a score=-268.000000
s ce10.chrX              2807614  9 + 17718866 GCTGCGGTG---
s caeRem4.Crem_Contig15   315027 12 -  1794024 GACGAGCCGTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3486535  9 -  4147112 GTCGAGCTG---
i caePb3.Scfld02_0      C 0 I 3212
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    335673 2103 +   484378 I

a score=268.000000
s ce10.chrX              2807623 102 + 17718866 AGGTGCTTGCATTTTCT-------GTAATTAAGGAGGGGTGGTGTCTAAGCAAGAGCCG---------AAAAGCAGGGAAATCTGAGTTGGCGCCACTT----------------TTGAAAAAGTCTGAAGAAC
s caeRem4.Crem_Contig15   315039 132 -  1794024 AGCTGACGACCCTATTTCGAATGCGTATTCAAGAAAAGACGCAGTACACTGAGGTGCTGTGCGTGTGCAGGAGCAAAGAAATCT--CTCAATGTCATTTGAAATGAGATTCGAGAgtgaaaaagtcagaaaagc
i caeRem4.Crem_Contig15 C 0 I 4822
e caePb3.Scfld02_0       3486544 3212 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    335673 2103 +   484378 I

a score=0.000000
s ce10.chrX              2807725 357 + 17718866 TTAAGCATGTTCAAACCACTAACATTTTTTTGATAGATAACTTAAAGAAAGTTTTAAAAAGTTGATAAAAACCTTGTTTTCACCTTTTTGTGACGTCATTTAAGCACCCCAGAAATGGTTTTCAGCCATTTCTTCACTGAACGTACTCAACTTTTAATATAACATCTAGAATTTTTTAAGAATCTATTTATAAAGCAAATAGAAATGGTTATTACATCGGGAAATAAGAACATAGTAATTTTGAGTGGAAACCCAGACAACACTGGAAGTTCGGGATGGGTAACATTGGGCAGGTTAAAAGAATTGGGTGAGAGGCCAAATAATTCAGTGCAATTAAATCAGGAAATTCTGAGTCGA
e caePb3.Scfld02_0       3486544 3212 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeSp111.Scaffold582    335673 2103 +   484378 I
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=765.000000
s ce10.chrX              2808082 117 + 17718866 GTATTTGAAGAA--TTTGAGTTTTGAAGTAGTATTGCACGAGGGGTAAAT--GATTTCAGCA---GCTGTCGATTTCCGAGTTCTGTGGAACATAGTCGCTTGCGCTTCGACTTAAAATTTAGA
s caeSp111.Scaffold582    337776 105 +   484378 GTATTCGGAGAGGTTTTGAGAATTAACATTGAAATGCGACGGGATAGAATCAGAATTCAACAATGGCGGTTGATTTCA-------------------CACTAGTGTTGCCGCTCATAGTTTATG
i caeSp111.Scaffold582  I 2103 C 0
e caePb3.Scfld02_0       3486544 3212 -  4147112 I
e cb4.chrX              17559051 6351 - 21540570 I
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=12982.000000
s ce10.chrX              2808199 108 + 17718866 GAAATACGCATCATCGGTGGATGTGGCCATTGATCGTTTCGCCGGTGGAGCATCTTCTTTTTCAAACGCG-GTTTTTCTTTTGATTGTGTTTGATTGTTCACTGAAAGT
s cb4.chrX              17565402 108 - 21540570 GAAATAAGCGTCGTCCGTTGATGTTGCCATGGATCGCTTCGCCGGTGGCTCTTCTTCCAATGA-GTGAGACAATCTTCTCTTGGTAGCAGTTGActgagttctgaaaat
i cb4.chrX              I 6351 I 887
s caeSp111.Scaffold582    337881 108 +   484378 GAAGTAAGCTTCATCGGTTGAAGTTGCCATAGTTCGTTTTGCTGGCGGAGCTTCCT-CGGTAATGTCACATagctttctcttctcaactTTCTTTGGCTCTCTGCAAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3489756 108 -  4147112 GAAATCGGCATCATCTGTCGAAGTTGCCATAGATCGTTGGAAAGGCATAATTTGCTCCGCCGAAATCGGA-AGTTTTTGTTCGACAAGACTAGGGAACTCTCTGCAAAT
i caePb3.Scfld02_0      I 3212 C 0
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=-2052.000000
s ce10.chrX              2808307 137 + 17718866 AAATTTTTAATGAATTAATGAATTTTTGAAGCAAAAAAGTTATTTACCTAGTGGTTGGTCTAGAAGGAGTT--ATATTGCTGGTGGT-----------AGATGGAGGAGTTGATGTCGAAGCAGCT---ATTGTGTC---AGCAGTTCTGAAAAGT
s caeSp111.Scaffold582    337989 124 +   484378 TGAAGGTTCGGGATAAGAAGTATGTATAA----------TTACTTACTCAGCTTGAGTCTGAGTAGAATCC--TTTTTGTTCATAAC-----------AGCttgagaaggagg---agaaaccAAT---GGTACGTT---GGCagttctgaaatga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3489864 122 -  4147112 GAAAGGTTT---------------TCTAA----------------ACTTAACAGAAGTTTTCGACATACCCAGTTGTTGTTGATGACGAAGATGAAGTAGTCGGAGAATCCGG---AGAAGCGGATGTAGTTGCGGTTCCGTCAGTTCTGAAACGT
i caePb3.Scfld02_0      C 0 I 830
e cb4.chrX              17565510 887 - 21540570 I
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=182.000000
s ce10.chrX              2808444 2 + 17718866 AA
s caeSp111.Scaffold582    338113 2 +   484378 aa
i caeSp111.Scaffold582  C 0 I 234
e caePb3.Scfld02_0       3489986 830 -  4147112 I
e cb4.chrX              17565510 887 - 21540570 I
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=0.000000
s ce10.chrX              2808446 239 + 17718866 TGACAATAATCGCCAAATTTTCCTCATATTAGCCTGTAGTAGGATTGCATACCTAGTACCTAGTAGAGCTGTGCGACAACCGAGACTTTCGGCAACCGGCAACTCGGTTGCCGGTTGCCGCACAGACTTGGTACCTACAGTGCCGGCAATAAAGGATTTCCCTTTTAGTTTTTTTTTTAGAAAAGCTGTCAAAAAATGTTTTACTAATTTCTTTTCtatataattcataaaattataat
e caePb3.Scfld02_0       3489986 830 -  4147112 I
e cb4.chrX              17565510 887 - 21540570 I
e caeSp111.Scaffold582    338115 234 +   484378 I
e caeRem4.Crem_Contig15   315171 4822 -  1794024 I

a score=355.000000
s ce10.chrX              2808685 91 + 17718866 atttgaaaaaaaaaaCTTA--TTGTTGAACTGATGTTTGGCTTTCAGGTGGTGAACTTGTTGCCATA--------TTCCTGGATGCATTCGAATCACCACT
s caeRem4.Crem_Contig15   319993 91 -  1794024 atcttaaaataaaaactcacattgcTGCACTATTGTT---CTCCTCGGTGTC--ACCCACTTCCATAGATTgatcttcct-----ctttttttagATCATT
i caeRem4.Crem_Contig15 I 4822 C 0
e caePb3.Scfld02_0       3489986 830 -  4147112 I
e cb4.chrX              17565510 887 - 21540570 I
e caeSp111.Scaffold582    338115 234 +   484378 I

a score=1765.000000
s ce10.chrX              2808776 22 + 17718866 TGCTGAAGGCGACGAAAATTGC
s cb4.chrX              17566397 22 - 21540570 TGTTGATGCCGACGGAGTCTCA
i cb4.chrX              I 887 C 0
s caeRem4.Crem_Contig15   320084 22 -  1794024 TGTTGATGTTGTCGTGAACTGA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3489986 830 -  4147112 I
e caeSp111.Scaffold582    338115 234 +   484378 I

a score=21518.000000
s ce10.chrX              2808798 87 + 17718866 CATAAGTCGACTGGATAGATGAAGTCTAGGTCAAAATCGCTATCGTTCGAATCCGTAGAAGAGTCAGAGTCCGTCCTTAAATAAATT
s cb4.chrX              17566419 85 - 21540570 CACAGGTCCAAGGGATAGATGAAGTCCAAATCGATGTCGCTGCTGTCCGAGCTGGAGGAAGAATCCGAGTCGTttctaaaaagaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   320106 87 -  1794024 CACAAGTCAATTGGGTATGCGAAATCCAGGTCAATGTCACTGTTATCCGAGTCAGTAGATGAATCCGAGCttgtgctgaaaaatatt
i caeRem4.Crem_Contig15 C 0 I 1242
s caeSp111.Scaffold582    338349 87 +   484378 CACAAATTCAATGGATAAATAGAGTCCAAATCCATGTCGCTGTCATTCGAATCCGTGGAAGAGTCCGAATCCGTGCTGAAAAACTAt
i caeSp111.Scaffold582  I 234 C 0
e caePb3.Scfld02_0       3489986 830 -  4147112 I

a score=-1979.000000
s ce10.chrX              2808885 35 + 17718866 T--AACGTTTTTTTTTAACTC---G-ACAAAAACGACAAAC
s cb4.chrX              17566504 38 - 21540570 ---aacttgGTCTTCTAGATTCTagttcttaaattttttac
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    338436 38 +   484378 cggaaaatgatttcttcaGTT---GCATTTGACACTCTTAC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3489986 830 -  4147112 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=25785.000000
s ce10.chrX              2808920 131 + 17718866 CTTCTTCGCATCCTTCGTTCCTCCTCCTGCCGGGCGAGATTCCGCTCAAACGAATTTCGCATACCATTCGCACGGAAGCGAGTAAACTCTACATTTACTTCCTGGATTCGTCGCGTCAGATCATTTCGCCG---
s cb4.chrX              17566542 131 - 21540570 cGCCGACGCATACGACGTTCCGCCGCTTGTCTGGCGAGTTGCTGCTCGAACGATTGTCTCATTCCGTTAGCACGAATTCGAGTGAACTCTCGACTAACTTGCTCGATGCGTCGAGTGAGATCGTCGCGTCG---
i cb4.chrX              C 0 I 96
s caeSp111.Scaffold582    338474 131 +   484378 ---CGTTTTCTACGCCGTTCCGATTCCTGTCTTGCGAGATTTCTCTCAAACGAATGTCTCATTCGATTTGCACGGAGACGAATGAACTCTCCATTCACTTCGTTGATACGACGTTGTAGATCATTTCTTCTTGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3490816 134 -  4147112 CTCCTTCTCTTCCGACGATCAACCTCAAGTCTGGCGAGGTTTTGTTCGAAGGATTGTCGCATGGCATTGGCACGGATCCGAATAAACTCCATATTGACCTCGTGAATTCGACGCCGCAACTCCATCCTTCGTGG
i caePb3.Scfld02_0      I 830 C 0
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=2797.000000
s ce10.chrX              2809051 59 + 17718866 GTTTCCTGATCTTTCGAGGAGATCTCGCATTGTTGTGAAACTGTCTGAATTAATAAAAT--
s caeSp111.Scaffold582    338605 59 +   484378 GTTGGTTGATCTTCTCAGCATTTCTCGGATATTCGTGAAATtgtctgaa--atgaaaagat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3490950 57 -  4147112 ATTCATGGAGTTTCTTAGCATTCCATGGATGACGGAAAAGTTATCTGAA--AACGAAAT--
i caePb3.Scfld02_0      C 0 I 993
e cb4.chrX              17566673 96 - 21540570 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=249.000000
s ce10.chrX              2809110 27 + 17718866 TAATT--CGAAATGTCAGGATTACAATTT
s caeSp111.Scaffold582    338664 29 +   484378 aaatctgtgaaatgaaaagaatccGGCTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e cb4.chrX              17566673 96 - 21540570 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=0.000000
s ce10.chrX              2809137 416 + 17718866 ATATATACATTTTTTTTGAATATTTTTTCAAAATAACTAACGGTTCTTTTAATTTCAACTAGGTTTTATCTGTAAATCCAGTAGTTTTGTTTTTGAACAACAAAactcctgagatgtcggccgctttatttttggtcaacttccgattgaatggttttaactttaaagactaaatatacattaatataaatgatattttgctagttaaaggtttttcaataacacctcaggttttttagttatactcatttgaaTAATCAAAAAAATAATCATTTCAAATTTTTTGATAAAACTAAAAAACCTAACAAATACATTTGTTTGCTAATTGATTTCTTTCATTGAAAATAACTAACGAAAATTGATTATTCTCCTTCACGATTATAATTTATTTGTAAAACGGATTTAAATAAAACAAA
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e cb4.chrX              17566673  96 - 21540570 I
e caeSp111.Scaffold582    338693   0 +   484378 C
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=382.000000
s ce10.chrX              2809553 4 + 17718866 ACTC
s cb4.chrX              17566769 4 - 21540570 ACTC
i cb4.chrX              I 96 C 0
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e caeSp111.Scaffold582    338693 0 +   484378 C
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=4700.000000
s ce10.chrX              2809557 43 + 17718866 ACTTGTCAAGATGTCTAACATTTGTTCCAGTTCATTATGAGCT
s cb4.chrX              17566773 43 - 21540570 ACTTGACAGAATTTGAAGCATTTCCGTGAGCTCCTCGTGGGCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    338693 43 +   484378 ACTGGCCACAACCTGAAGCATTTGTTCCAAATCATCATGAGCT
i caeSp111.Scaffold582  C 0 I 810
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=1830.000000
s ce10.chrX              2809600 175 + 17718866 TGAGCGA---CGATTCTGTC---TTCCATAGTCCTGAAAATGTTTTTCAAAACTAAAAAAAAATAGCGTTGCTGTGCATAAAGAACATCGG-----AAACTACGACAATTAAAAAAAATGCC----------CGATAAAGATGCGATGAGCATGGATGGCAATTGATTCTACGTCAATATTTGCGCAAGCGACGAA
s cb4.chrX              17566816 186 - 21540570 TGAGCAATAGCAGCCGCGTCGAGGTCCAttgtactgaaaatcaatGGCAAAACTAAAGTGAAACAG-------ATGGAGAAAtatttccagcaaaaaaatcgggagaattgataaaaaagccacgtagaatacaaaaaatgtgcgaaaagca---aaaCCAATAGTTTCTGCCACACCAAATGCGCCAACAGCAGA
i cb4.chrX              C 0 I 543
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e caeSp111.Scaffold582    338736 810 +   484378 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=0.000000
s ce10.chrX              2809775 682 + 17718866  
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e cb4.chrX              17567002 543 - 21540570 I
e caeSp111.Scaffold582    338736 810 +   484378 I
e caeRem4.Crem_Contig15   320193 1242 -  1794024 I

a score=800.000000
s ce10.chrX              2810457 46 + 17718866 GAAACTAAATTTAAAAAACATCAACAAAACATTTCATTTGAAATAT
s caeRem4.Crem_Contig15   321435 40 -  1794024 gaaagaaaacttaaaaaaaa---aaaaattgttttattgaaaa---
i caeRem4.Crem_Contig15 I 1242 C 0
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e cb4.chrX              17567002 543 - 21540570 I
e caeSp111.Scaffold582    338736 810 +   484378 I

a score=1616.000000
s ce10.chrX              2810503 14 + 17718866 CATCATAAAACACT
s cb4.chrX              17567545 14 - 21540570 cacgaaaaaaaact
i cb4.chrX              I 543 C 0
s caeRem4.Crem_Contig15   321475 13 -  1794024 -ataacaaaaaatt
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3491007 993 -  4147112 I
e caeSp111.Scaffold582    338736 810 +   484378 I

a score=846.000000
s ce10.chrX              2810517 7 + 17718866 -CTAATTC
s cb4.chrX              17567559 8 - 21540570 attagaTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   321488 8 -  1794024 ataagtCC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3492000 7 -  4147112 -CTAATTT
i caePb3.Scfld02_0      I 993 C 0
e caeSp111.Scaffold582    338736 810 +   484378 I

a score=80758.000000
s ce10.chrX              2810524 173 + 17718866 TTCTCTAGAAAATAATCCTCGTGGAACAGATTCAGCATTAACTCTTCAAGTTCATTGAAATTATCGGCATTCCTAATTTGATTGTTGAGACATGCGCATATCAATGCGGTTCTTGAGTTGATCTTCTCCAGTAGATAAATATACATGTACGTAAATTGCATGAAGTTTGGAGG
s cb4.chrX              17567567 173 - 21540570 ATATTAAGAAAATAGTCTTCATGGAACAAGTTCAACATCAGCTCCTCCAACTCGTCGAAATCGCTGCTCACAGTACTTTGGTAGTTTAGACACGCACAAATCGACGCGGTTTTCagattaattttttccagcaaaaagATGTACATGTACGAGAATTGCATGAAATTCGGAgg
i cb4.chrX              C 0 I 351
s caeRem4.Crem_Contig15   321496 173 -  1794024 ATCTCGAGAAAATAATCTTCGTGAAACAGGTTTAGGAGCACCTCctcaatttctagaaaatccGTGCTATTGTTGCATAGGTAATTTAGACACGCACACAATGAAGCAGAATCCGAAttgattttctccaaaaagaaaatgtacATATACGAAAATTGCATGAAGTTTGGTGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    339546 173 +   484378 TCTTCAAGGAAATACTCTTCGTGATAAAGATTCAACATCAGTTCTTCAAGTTCATCAAAATCTTTGCCTACAGTACTCTGGTGGTTGAGACAAGCACATATAATTGCAGTTCTCGAGTTGATTTTCTCCAAAAGGTAAATGTACATATACGAAAATTGCATGAAATTCGGAGG
i caeSp111.Scaffold582  I 810 C 0
s caePb3.Scfld02_0       3492007 173 -  4147112 TCATCAAGGAAATAATCCTCATGAAAAAGGTTCAACATTAGTTCCTCCAATTCGTCAAAGTCACGATTCAAAGTACTTTGGAAATTGAGACAAGCGCATATGGCAGCCGTcgttgaattaattttttccaagaaatatATATACATGTACGAAAATTGCATGAAATTTTGCGG
i caePb3.Scfld02_0      C 0 C 0

a score=-8923.000000
s ce10.chrX              2810697 48 + 17718866 ACGGGCCTATTAAAACTTATTAAGTACAATTTTTTGGTAACTCATAAA----
s caeRem4.Crem_Contig15   321669 45 -  1794024 GCGAACCTGAATA----CTATTTGTAAAACAAGTTAAGCAAGCAGTGTA---
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    339719 46 +   484378 GCGATACTGCAA-----CATTGAGtattaaaattgaagaaagtgtATTC-GG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3492180 47 -  4147112 CCGCATctaaaaaaa-tcgttttgtttgaaaat----gaacttcgGTTCAAg
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17567740 351 - 21540570 I

a score=60774.000000
s ce10.chrX              2810745 152 + 17718866 CTACCTCCAAAAAGAAATCTCGCCTTTTTGTACAAAATGCGATGGCAAGTCTTAATAACATAAGTTCATCCATTTTATTGCTAGCTTCGTATGCTGAAACTAATTGCACCAGTTTCAGAGTATTATTGCTGCGAAATTCCAATTCTTCTGAA
s cb4.chrX              17568091 152 - 21540570 CTactttcaaaaagtaatcCCTCCGCTTGGTACAAAACGCGATTGCCAATCGCATGCAAATCAATTCATCCATCTTGTTCGAATCCTCATATGCTGAAACCAACTCCACCAGCTTTGAAATATGGTTACTTCTAAAGTCCAGCTCttcttaa
i cb4.chrX              I 351 C 0
s caeRem4.Crem_Contig15   321715 152 -  1794024 ATACCCTGAGATAGTAATCACGACGTTTTGTACAGAACGCAATGCCAAGTCGGAGTAGAATGAACTCATCCATTTTGTGAACGACTTCATATTCAGATACCAGTTGAACAAGTTTCAAAGTGTTGCTGTTCCGGTACTCCAGTTCTTCTGCA
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    339765 152 +   484378 CTACCTTTAGAAAATGATCGCGTCGTTTGGTGCAAAAAGCAATAGCTAAACGTAAGATCATTAGATCATCCATCTGCTTATTCGTTTCGTACGCCGAAACTAACTCTGTTAGTTTCTGAATATGGTTGTTACGATAATCCAGTTCCTCTGAA
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3492227 152 -  4147112 ataccttcaaaaaataatcccTTCGTTTTGTACAAAAGGCGATGGCTAGTCTCAAACACATCAATTCATCCATTTTGTTCAGTGCTTCGTATGCTGAGACTAACTCCActaatttcaatatttgatcATCTCgaaattcagtttcttctgaa
i caePb3.Scfld02_0      C 0 I 28

a score=-1804.000000
s ce10.chrX              2810897 21 + 17718866 AT---GTCAAGTGATCATTATAAA
s cb4.chrX              17568243 21 - 21540570 aacttttgaaatcat-gGTCCA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   321867 21 -  1794024 AA---TTAAATTAATAAATTCAAA
i caeRem4.Crem_Contig15 C 0 I 39
e caePb3.Scfld02_0       3492379 28 -  4147112 I
e caeSp111.Scaffold582    339917 37 +   484378 I

a score=216.000000
s ce10.chrX              2810918 11 + 17718866 GTTTAAATTAt
s cb4.chrX              17568264 11 - 21540570 ATATGACTTGT
i cb4.chrX              C 0 I 24
e caePb3.Scfld02_0       3492379 28 -  4147112 I
e caeSp111.Scaffold582    339917 37 +   484378 I
e caeRem4.Crem_Contig15   321888 39 -  1794024 I

a score=0.000000
s ce10.chrX              2810929 586 + 17718866  
e caePb3.Scfld02_0       3492379  28 -  4147112 I
e cb4.chrX              17568275  24 - 21540570 I
e caeSp111.Scaffold582    339917  37 +   484378 I
e caeRem4.Crem_Contig15   321888  39 -  1794024 I

a score=62.000000
s ce10.chrX              2811515 10 + 17718866 TTAAAACATT
s caePb3.Scfld02_0       3492407  9 -  4147112 TTGAAAC-TA
i caePb3.Scfld02_0      I 28 C 0
e cb4.chrX              17568275 24 - 21540570 I
e caeSp111.Scaffold582    339917 37 +   484378 I
e caeRem4.Crem_Contig15   321888 39 -  1794024 I

a score=2004.000000
s ce10.chrX              2811525 16 + 17718866 ACTTTGTACTGAATCT
s caeSp111.Scaffold582    339954 16 +   484378 ACTTTGTTCTTCACTA
i caeSp111.Scaffold582  I 37 C 0
s caePb3.Scfld02_0       3492416 16 -  4147112 ACTTTGTTCTTCACGA
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17568275 24 - 21540570 I
e caeRem4.Crem_Contig15   321888 39 -  1794024 I

a score=42766.000000
s ce10.chrX              2811541 190 + 17718866 TCAAAACTCAAATATGCAACTGCCGCTTTCCGAATTTGCCCAATTTGTTTTTTGCTCAATGATTGCCCGGCAGACTTAATTGCAGCCCGAACTTCTCGTTCCACTTCCTTATCCAGTTTCTTACTGCCCTCCGAGTCTTCGATATTGTCTTCAACTCTGAAAATTCACC-------------------TTGATTTTAAGAA---GTGTAAAT-----------------------------------
s cb4.chrX              17568299 186 - 21540570 TCAAAATCTCTGTACGTGATAGCGGCTTTTCGTATCTGgccaatttgttttttgttcaatggCTCACCGGCTGCTTTGATTGCGCTTCGAACGTCTCGTTCCACTtgttcttccttttttctcttttctttcagatT------GATTTCATCTA--GTGGTGGACAtcc-------------------actatttt---tt---ctgaaaaccataAAT----------------------------
i cb4.chrX              I 24 I 25
s caeRem4.Crem_Contig15   321927 211 -  1794024 TCAAATTCCCGGTAAGTAACCGCTGCTTTCCTTATCTGAGAAATTTGTCGCTTGTTCAACGACTCGCCCGCCGATTTGATGGCAGTTTTCACATCTCGTTCAACCAGTTCTTCCTGtttcttcctatttttcagttc------ttcctCGTCGA--GTGTAACAGGTAT-------------------ATAATTTTCAACC---CTGAAAACCAATATTCACTATTATTTGCAGTTAAGAT------
i caeRem4.Crem_Contig15 I 39 C 0
s caeSp111.Scaffold582    339970 192 +   484378 TCAAAATCTCTGTACACAATAACTGCTTTTCTTATCTGgccaatttgttttttggtgagTGATTCACCGGCGGATTTGATAGCTGCTCTCACATCACGTTCAACCTGTTcatcttgtttctttttcgttttcaagtC------AATTTCATC-----CTGAGATTCGTC-------------------cctgttttcattt---ctaaaaataaggGAT----------------------TAAAGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3492432 217 -  4147112 TCAAAATCTCTATACACAATTGATGCTTTCCTGATCTGTCCAATTTGTTTCTTGCTCAGCGGTTCTCCGGCAGATTTGATAGCAGCTCTGACTTCTCGTTCCACTTGATCATCTTGTTTACGTTTGGCTTTGAGGTC------AATTTCATCGA--GTGGAGTATCGTCATATGTCACTCTACAACTTTCTGTTTAGATATtggttgaaaacaaagaat----------------------ggaATT
i caePb3.Scfld02_0      C 0 C 0

a score=-1487.000000
s ce10.chrX              2811731 5 + 17718866 TGGCC-
s caeRem4.Crem_Contig15   322138 5 -  1794024 TTATC-
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    340162 5 +   484378 -TGTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3492649 5 -  4147112 -TATCT
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17568485 25 - 21540570 I

a score=118188.000000
s ce10.chrX              2811736 384 + 17718866 ---------------AACCTAGCTACACGTCTCCATTTATTCGTTTTTGGCCAAATATCTTGCAGAAGCTCGTTTGAAATCGTACCCATCGAATCCACTGTCGCTACTTTATTAGTTGTTAAATATTTGTTGGTCTCTGCTTCAGCAGTTTTTCTCATCGTAACTGCTCCAGTTTCTTTTAGGACTGCATTGGCTCTTGATATAAATTCTTCCAGA--ACTCCATTGTCTACATTTGCAAGCTCTCCCAATTTCAATCGCTCTCTTATTTGTTTTTCTTCTGTGGATATATCGGTTGTCAGTTTTTGCAAGTTTGATTTCAAATTTCTTGATTCTGGATATATGTAGTGAGTGGATG-----ATTCAATG--------TCTTCAGATTCTTCGAGATCTTTTCTGGAAATAATA--
s cb4.chrX              17568510 392 - 21540570 ---------------AACCTGGCAAAACTTCTCCACTTGTTGGTTTTTGGCCAAATATCTTGCACGAGATCCTTTGAGATTGTTTCGAAAGAGTCTCCAATCGGTACCCGTAACGCTGACAAGAATTTGCGAGTTTCTGCttctgcaatttttcgaactgTCACCGCTTCTGTCTCTTTCAAAACGGTATTTGCCCTAGCGATAAAATCTTCTAGA--GCAGCATCATCCGTATCTGCAGGCTCCCCCGATTCCAACCGAGCTCTAATCTGTTGCTCTTCCGTCGAGATATCCGTCGCCagtttttgcaaatttgattttaatgCATTTGACTCTGGACTCATATAGTGATTTCCCAGCGGCATAATATCAGTAGCAGTCGTAGTC----TCAagatttttcctgaaaaac---aa
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig15   322145 389 -  1794024 ---------------CACCGAGCGAAACTTCTCCATCTGTTCGACTTCGGCCAAATGTCATGCATCAgttcatttgaaattgtttccaGAGTATCACCAGCAGGGACATTTATTGATGCTAAAAACTTCTTGGTCTCAGCCTCCGCTATCTTTCGTACAGTAACTGCTTCTGTTTCTTTCAGAACTGTATTAGCTCTACTGATGAAATCCTGCAAT--ACACTGTCATGCACAGTTGCAGACTCTCCCGATTCCATCCGAGTTCTTATCAGctcttcttccgttgaaataTCACTTGCTAATCTTCGTAAACTGTTTCTCAGTTTAGTGGACTCCTGACTGATATACTTATTGCCTA-----ATGCTACCATGagc--tcctcttcttcttcagtcggttttctaaaattc---ta
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    340167 405 +   484378 TGCTAATCAAAAAGACACCTAGCAAAAGATCTCCATCGGTTGGTTTTAGGCCAAATATCTTGCACCAGCTCGTTCGTAATGGTTTCTGTAGCGTCCCCAATGGGTATTTTCAATGAGGATAAAAACTTCTTAGTTTCAGCTTCAGCAATCTTTCTGACAGTAACtgcttctgtttcttttagAACAACATTGGCTCTTGCAATAAAATCCTCCAAAACATGCCG--ATCAATTGTCGCTGGTTCACTAgcctccattttctctcgaatGTTCTGCTCTTCCGTTGAAATATCTGCGGACAGCTTTTGCAAGTtggatttcagaatattcgaTTCTTGACTCATATATTGGTTTCCTA-----ACGCAATTTCCAAC--TCTTCAAGGGTTGgcctttcttttctgaaaattgta--
i caeSp111.Scaffold582  C 0 I 22
s caePb3.Scfld02_0       3492654 387 -  4147112 T---------------ACCTAGCAAGACTTCTCCATTTGTTCGATTTAGGCCAAATGTCTTGCATCAACGAGTTGGAAATAGACTCAAGTGCATTTTCTGTTGGTAACTTCATCGATGTCAAAAATTTCTTAGTCTCAGCTTCAGCAATTTTCCTGACAGTCACAGCttctgtttctttcaaaactacaTTAGCTCTTGAAATGAAGTCATCTAAA--GTGCCGTTATCGACAGTATCGGATCCTCCCGAAGCAATTCTCTCCCGGatattgttttcttcatttgtgaTATCCGTTGCCAGTTTTTGCAAACTCGCCTTCAAATCATTTGATTCCTGACTCATATACTGACTTCCTA-----AAACATCAGGCACC--TCATCTCgactttcttcttcctttctgaaaata-----
i caePb3.Scfld02_0      C 0 C 0

a score=-4487.000000
s ce10.chrX              2812120 23 + 17718866 TGTAAAGATGCAAACTTCTAAGT---
s cb4.chrX              17568902 22 - 21540570 CCAAATCCTTGTTTAT----GGAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   322534 26 -  1794024 tataattattatttcttttaatAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3493041 23 -  4147112 tttgatgttACTCTACTTTAAAT---
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    340572 22 +   484378 I

a score=34758.000000
s ce10.chrX              2812143 81 + 17718866 -------ATCAATAAGTACGTCTTAGGAGTGCATGTGATAAGTGATTCGATGAACAATTGCTCGTTTTTATCAAAGTGCTTTATGTAA
s cb4.chrX              17568924 72 - 21540570 -------TAAAGTCAATACGTGTTAGCAGTGC------AGAGTGGCTCAATAAACAAGTGCTCA---TTATCgaatggatttctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   322560 78 -  1794024 -------AGCGGTTAATACGTGTTAGGAGTGCTGCTTAAAAGTGGCTCAATGAACAAATCGTCA---TTGTCGAatggatttctgaaa
i caeRem4.Crem_Contig15 C 0 I 617
s caeSp111.Scaffold582    340594 80 +   484378 ATTAAT-----GTTAATACGTGTTAGGAGTGTTGTTTATTAGTGGCTCGATAAACAAGTTCTCG---TTATCAAaaggatttctgaaa
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0       3493064 84 -  4147112 -TTGGCATGCGGTTAATACATGTTAGGAGTGCTGCTTAATAGTGGCTCGATAAACAAGTGCTCA---TTATCGaatggatttctgaaa
i caePb3.Scfld02_0      C 0 C 0

a score=1050.000000
s ce10.chrX              2812224 3 + 17718866 TTG
s cb4.chrX              17568996 3 - 21540570 atg
i cb4.chrX              C 0 I 1344
s caeSp111.Scaffold582    340674 3 +   484378 atg
i caeSp111.Scaffold582  C 0 I 1009
s caePb3.Scfld02_0       3493148 3 -  4147112 atg
i caePb3.Scfld02_0      C 0 I 728
e caeRem4.Crem_Contig15   322638 617 -  1794024 I

a score=0.000000
s ce10.chrX              2812227 1555 + 17718866  
e caePb3.Scfld02_0       3493151  728 -  4147112 I
e cb4.chrX              17568999 1344 - 21540570 I
e caeSp111.Scaffold582    340677 1009 +   484378 I
e caeRem4.Crem_Contig15   322638  617 -  1794024 I

a score=113.000000
s ce10.chrX              2813782 8 + 17718866 TTATTAGA
s caeRem4.Crem_Contig15   323255 8 -  1794024 TTCTTATC
i caeRem4.Crem_Contig15 I 617 C 0
e caePb3.Scfld02_0       3493151 728 -  4147112 I
e cb4.chrX              17568999 1344 - 21540570 I
e caeSp111.Scaffold582    340677 1009 +   484378 I

a score=546.000000
s ce10.chrX              2813790 2 + 17718866 TA
s caeRem4.Crem_Contig15   323263 2 -  1794024 TA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3493879 2 -  4147112 TA
i caePb3.Scfld02_0      I 728 C 0
e cb4.chrX              17568999 1344 - 21540570 I
e caeSp111.Scaffold582    340677 1009 +   484378 I

a score=594.000000
s ce10.chrX              2813792 3 + 17718866 CTC
s caeRem4.Crem_Contig15   323265 3 -  1794024 CTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    341686 3 +   484378 ctt
i caeSp111.Scaffold582  I 1009 C 0
s caePb3.Scfld02_0       3493881 3 -  4147112 TCc
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17568999 1344 - 21540570 I

a score=64041.000000
s ce10.chrX              2813795 174 + 17718866 GTATCAATTTTCTAGTCATCAACTCCATTGTATCATTTCTTTCGCTGTTCTCCAAAAAATTATTTCTTTCGAATATCCGTATTTCCAGATGACTACACGTTTTGAAGAGATTGTAGAGATGTTTAATATTTTCATCGGTAAAGTTGACATTTTTCCAGCCAGTTAATATCTAAA
s cb4.chrX              17570343 165 - 21540570 GTATCAATTTTCTAGTGATCAACTCGTAATTCTTT---------GCGCCCTTCAGGAAATTGTTctgttcaaaaagttggatCTCCTGTTTGCTACAATTTTTCAAGAGATCATATAGATGTCTGATGTTTTCCTCTGTCAAATTGACGTGTTTCCATCCAGAAATCATCTGAA
i cb4.chrX              I 1344 I 39
s caeRem4.Crem_Contig15   323268 174 -  1794024 GTACTAATTTTTTGGTAATCAACTCGTAGGTCTCCACTGTTTCAGCATCacccaaaaaattattatcttcaaaaatccGTATCTCTggttttttgcactttttgaaaaggttATAGAGATGTGTTGTGTTTTCTTCTGTTAATTCAACGTTTTTCCATCCCAAAATGATCTGAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    341689 174 +   484378 gcgttaacttctttgttattagtttcgtcacttcttctttcttcttctcgtctaGAAAGTTATTCTCCTCAAACAACCGTATCTCTTGTTTAGTACAACTTTTGAACAGGTTATATAGATGTGTAATGTTCTCGTCGGTAAAATCGACGTTGTTCCATCCTGATATCATCTGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3493884 174 -  4147112 gtttcaactttttggttGCCAGTTCCAATTTAATTTCTTTGTCCTTGTCcctcagaaaattgatttcctcGAACAATTGTATTTCTTGTTTCTCACATTGCTTGAATAAATTATGAAGATGTGTGATGTTTTCATCTGTCAATTCAATGTCTTGCCATCCCGATACCACCTAAA
i caePb3.Scfld02_0      C 0 C 0

a score=-3693.000000
s ce10.chrX              2813969 43 + 17718866 ACATCAAAAA-TTACGTGAATATCAATGG-AATTGCGCATACAAT
s caeRem4.Crem_Contig15   323443 40 -  1794024 -----ACATTGTTGTGCAATTTCAAACTATAAAAAGGACTACTTT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    341863 43 +   484378 CCAGCGCACT-TCAAATAAactcaaactg-aaaaaaacccaCTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3494058 43 -  4147112 AATCAATCAT-TTGAATTGACGTGGGCCG-AATGTTTACTACTTT
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17570508 39 - 21540570 I

a score=20988.000000
s ce10.chrX              2814012 51 + 17718866 TTCATGCTCAGAAGATATTTTTGCTATTTCCGATTTGACAAATTCTGAAAA
s cb4.chrX              17570547 51 - 21540570 CTCATGCTCCGCTGTAATTTTCGCTATCTCGGATACAACGAAATCTGCAAA
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig15   323483 51 -  1794024 TTCATGCTCCGCAGTTATTTTAGCAATTTCCGAATTgacaaattctgaaac
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    341906 51 +   484378 CTGATGTTCtgttgttattttttgaatctccGACTGtacgaattctgaaaa
i caeSp111.Scaffold582  C 0 I 1929
s caePb3.Scfld02_0       3494101 51 -  4147112 TTCGTGCTCCGCTTTTATTCTCTCTATCTCCTTCTGTACGAAAcctgaaaa
i caePb3.Scfld02_0      C 0 C 0

a score=-1994.000000
s ce10.chrX              2814063 1 + 17718866 A-
s cb4.chrX              17570598 1 - 21540570 -A
i cb4.chrX              C 0 I 862
s caeRem4.Crem_Contig15   323534 1 -  1794024 -t
i caeRem4.Crem_Contig15 C 0 I 6
s caePb3.Scfld02_0       3494152 1 -  4147112 g-
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=-564.000000
s ce10.chrX              2814064 50 + 17718866 AAAGCTTTTGAAGGAAAAACTTCTTG-TTTTCA-------------CCTACCTTCCATAATTTC
s caeRem4.Crem_Contig15   323541 44 -  1794024 ---------------TAAACTGAGTGATTTTTAGATGT-----ATTCCAACCTTTCATAGTGAA
i caeRem4.Crem_Contig15 I 6 C 0
s caePb3.Scfld02_0       3494153 55 -  4147112 -------tttgagaaaaaattacat--tttttgaaagctacAAAGTCCGACCTTTCATGTTTTC
i caePb3.Scfld02_0      C 0 I 163
e cb4.chrX              17570599 862 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=-1368.000000
s ce10.chrX              2814114 168 + 17718866 CATTAT---TTATGACGTGTTAATACCTGAATTTAATTTGTTTTTTACTTTAAAGAAGTTTCA--AAGTGTGA-----AGACAA-TGAGGATTTAAAAAATTAATTTTAACCGTATAGTTAAAATACTCCCTAGTTAGGTAAGTAAATTTTTTTCTTATTCAAATATAGGACAAACACA
s caeRem4.Crem_Contig15   323585 126 -  1794024 AATTACCGGTTTAGACatgatgatctgaaaaaataattaatct---GCTTTAA------TTCATTGGGCGTGGTTATCGGACAAAGGAGGAGATTAGAAACTAATGAGAGACGTCT---------------------------------------TTATTTGAACGAAG-----AGACA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3494208 163 -  4147112 I
e cb4.chrX              17570599 862 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=-2288.000000
s ce10.chrX              2814282 83 + 17718866 --TCATTTTTACACAAAAATGATGAAAAATAAGCTTTCAA----------TTTTTGTTTGAAAAATGTAGTA-ACACACAATGTATCATTAATATT
s caeRem4.Crem_Contig15   323711 78 -  1794024 TGacttctaaaaagaaaaatgcgaaaagaaaattacacGACGCAAAAGAATTTATGAGCG--ACGTGTATAAGGTCCATT----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3494371 82 -  4147112 --TccgtttcaatgaaaaatgatggcaATAAATGTTCCGA------------TATTGTCGTCACTTGTAATAAACCCACTTTGCAATACTGATATT
i caePb3.Scfld02_0      I 163 I 82
e cb4.chrX              17570599 862 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=-1164.000000
s ce10.chrX              2814365 122 + 17718866 GAGAAAA---------CCATAATC-----TGAAAATTATTGTTTATGAATTTTCCAAAAAGAGATGTGATTCCTATCACAACCAAAACTTCTTTTTTTTTCTCTACCTATCTATGTCTCTTATCTCAATTAATCAA
s caeRem4.Crem_Contig15   323789 105 -  1794024 TAGAAGAGATGGGTGGCAATAATCCTTTCTGA-------TGTTCTTACATTTGTAAAGAA------TAATCTTTACTAAAGGTGATA-----------------AAATATCTACATCAAACATATTGAG-AGTCAA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3494453  82 -  4147112 I
e cb4.chrX              17570599 862 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=702.000000
s ce10.chrX              2814487 9 + 17718866 AAAAAAAGA
s cb4.chrX              17571461 9 - 21540570 aaaaaaaat
i cb4.chrX              I 862 C 0
s caeRem4.Crem_Contig15   323894 6 -  1794024 ---GAAAAC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3494453 82 -  4147112 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=12732.000000
s ce10.chrX              2814496 104 + 17718866 ---------------------------AGGAGTGTGCAATATAAAGTCTTGTGTTCTCC-----CACGATGAGAAGGACGACGAGAGAAATCAATAGACTGCTTTTGAGTGGCCACGCACAAGCAAAATGGACATG
s cb4.chrX              17571470 102 - 21540570 gggCGTATG------------CACACAACAAGTAATCGTTC--------CTTATTTTCCATATTCACG--AA----GACGACAAGAGAAATCAATAGA--------GTGTGGccatgccaaaaaaaaagagacatg
i cb4.chrX              C 0 I 5482
s caeRem4.Crem_Contig15   323900 123 -  1794024 GAAATTATGACATTTTGGGTCTGCACTAAGAGGGCCCATTC---ATATTCCCGTTCTCC-----CACGTTGA----GACGGCGAGAGAAATCAATAGACTGCATTTGAGTGGCCACGCC-AAGCAAGATAGACATg
i caeRem4.Crem_Contig15 C 0 I 11
s caePb3.Scfld02_0       3494535  94 -  4147112 ---------------------------aggaaaatgcattt-----ttttgggTTGTTC-----AACAATGA----GACAACGCGGGAAATCAATAGACAACATTGGAGTAGCCACGCC-AAGAAAAATAGacatg
i caePb3.Scfld02_0      I 82 C 0
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=925.000000
s ce10.chrX              2814600 25 + 17718866 ----------ACGAATAAGACGAATAGGACCGAAT
s caeRem4.Crem_Contig15   324034 25 -  1794024 ----------aagaagaagacgaagaagattGGAT
i caeRem4.Crem_Contig15 I 11 I 1520
s caePb3.Scfld02_0       3494629 25 -  4147112 ccaaaaaaaaaagaaggaaacgaaG----------
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17571572 5482 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I

a score=282.000000
s ce10.chrX              2814625 3 + 17718866 AAG
s caePb3.Scfld02_0       3494654 3 -  4147112 AAG
i caePb3.Scfld02_0      C 0 I 1931
e cb4.chrX              17571572 5482 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I
e caeRem4.Crem_Contig15   324059 1520 -  1794024 I

a score=0.000000
s ce10.chrX              2814628 4408 + 17718866  
e caePb3.Scfld02_0       3494657 1931 -  4147112 I
e cb4.chrX              17571572 5482 - 21540570 I
e caeSp111.Scaffold582    341957 1929 +   484378 I
e caeRem4.Crem_Contig15   324059 1520 -  1794024 I

a score=520.000000
s ce10.chrX              2819036 8 + 17718866 CGTGGGTT
s caeSp111.Scaffold582    343886 8 +   484378 CGTGAGTC
i caeSp111.Scaffold582  I 1929 C 0
e caePb3.Scfld02_0       3494657 1931 -  4147112 I
e cb4.chrX              17571572 5482 - 21540570 I
e caeRem4.Crem_Contig15   324059 1520 -  1794024 I

a score=-212.000000
s ce10.chrX              2819044  5 + 17718866 ---------GCAGA
s caeSp111.Scaffold582    343894 14 +   484378 ACATATTCCACTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3496588  5 -  4147112 ---------GCTGT
i caePb3.Scfld02_0      I 1931 C 0
e cb4.chrX              17571572 5482 - 21540570 I
e caeRem4.Crem_Contig15   324059 1520 -  1794024 I

a score=32204.000000
s ce10.chrX              2819049 652 + 17718866  
s caeRem4.Crem_Contig15   325579 574 -  1794024  
i caeRem4.Crem_Contig15 I 1520 C 0
s caeSp111.Scaffold582    343908 533 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3496593 516 -  4147112  
i caePb3.Scfld02_0      C 0 I 89
e cb4.chrX              17571572 5482 - 21540570 I

a score=-8074.000000
s ce10.chrX              2819701 134 + 17718866 AtgcgagggtcggaacatgctacaatgctctaaatttccttaaaagctcttttcatatatttcggcaatattccataacgttgtctggaaattGAAGgtgtttacacaaaatccccactggcgctactccacct
s caeRem4.Crem_Contig15   326153  51 -  1794024 AGCCGAGAGT-GAATTATCACGTACCAC-----ATCAC----------TTTTTCGTA-------------------------------------------TTTTGACAAA------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    344441  47 +   484378 --------------CTATCCTCTATAATT-TGAATCAC-----AAg--cttttcaga-------------------------------------------acaaaacaaatt----------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3497109  89 -  4147112 I
e cb4.chrX              17571572 5482 - 21540570 I

a score=24123.000000
s ce10.chrX              2819835 281 + 17718866 gtaaCCATATAATTTAAATCAGCTCTCTCACGCGCATTGCTGCGTATTTCGTAATTCTGATAGCATAATCATAACCAGAATACGAAAAACTGCTTGTCCCTCCCACAGTAGTCACTCACATG---AATGAAATTATCAGAATATCACTCGTGAGCTTTC---ACTTTT----------------TTAGC-A--TGTCTGTTTTCTAACT--------ACACGAGCAGCTGTTTTATTTAAATTGGCCAT----------------------GGGAGGTTAAGAAAACAAATGAATAGGTG---GCCATAAAACGTGATAT-------------TTAAGAGC--TCCTGAAGCC---------------------------A
s caeRem4.Crem_Contig15   326204 294 -  1794024 --------------------------------------------TATTTCATAATTCT------CTAGTT--GGCCGAAATACGAC----TTTTGGCCACTCCCACGGTAGTCATTCACATGTGAAATCAAATTATCAG-------CTCGTGAGTTTTCATAACTATT---TTTCGGCTTCTCTTTTCTGCTTgttcagttttcattctgtttctTGACAACAGCAGATGTTTTTTGTCAAATGGTCATGAGCCAACAC---AAATCTGTTGGGCGGTCCG----ATAACTCGATAAAT----GCTTAAAGGTGTCAAAATGAATGTTGTATTCTTTGAGTAATGTTGAATGC--------TCCTTCTCTCAATCG--TTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    344488 320 +   484378 ---atcGTTTA--CCACATCA-C---TTTCCGTATTC------AGATTTCATAACTTT------CTAGTC--GGCCAAAATACgaa----tttctcattctcaCACGGTAGTCATTCATATAACAAATCAAATTATCAA-------CTCGTGCgttttcataactttt---tctccgattttctttggc-ctttttcagtctcctagtttttctttcataacagcagatgttttttgtcaaatgGTCATGAGCCCACCCTGAAAATCAGGAGGGAGGTCAAAATAAAAGCTCAATGAATGGGTGCGTCAATAAGCTAACTTGAATA-------CTCTGAGC--CTCGGCACTC--------------TCCGAACCGTCGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3497198 338 -  4147112 ATAATCACGTA--CCACATCA-CTCTTTCTCATATTTTGACAAATATTTCATAACTTT------CGAGTC--GGCCAAAATACGAA----TCTCTAGTTCTCACACGGTAGTCAGTCatatcagaaatcaaattatCAG-------CCCGTGagttttcataacttttttctttttccttttctttggC-C--TATCAGTCTcctg--ttttcattcaaaacagcAGATGTTTTGTGTCAAATGGTCATAAGTTAAAT----AAATCAGGAGGGcggtccgaaaaaaaactcaataaataAA-GCGTCTGAGTGTCAACTTGGATG-------CTTAGAGC--CCCTGAATTCACATTCGTTCTTCTTTCTGACCG--GCA
i caePb3.Scfld02_0      I 89 C 0
e cb4.chrX              17571572 5482 - 21540570 I

a score=8874.000000
s ce10.chrX              2820116 40 + 17718866 CAAATTTCCCACGGA-----GAAAGCGA------AGAGTTAGCTGGCAAAG---
s caeRem4.Crem_Contig15   326498 45 -  1794024 AGAAGTTCCCACGAATTTgtgacaaaaa------agagagagaaaggagtG---
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    344808 51 +   484378 AAAAGTTCCCACGAATTTGTGGCCACAAAAAGAGAGCGACGGGGGGCAGTG---
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3497536 45 -  4147112 AAAAGTTCCCACGAATTTGTGGCCACGA------AGCCGCGGAAGGGGGTG---
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   178303 48 +   357190 CAAGTTTCCCACGAATTTGGAATGGAAA------AGAGAAGAAGGCGAAAGAAG
i caeJap4.Scaffold17990 N 0 C 0
e cb4.chrX              17571572 5482 - 21540570 I

a score=169046.000000
s ce10.chrX              2820156 348 + 17718866 GGGTACATACTT-------GAGCAGTAGGATGACCAATTAGCATTTCTCGTGCGCTCTCAATCTTGTTCTA-CTTGCTTAATATCGC--TTTTCGG------------------------Gttcttcctttttctgcgctgttgctcctttttcacgttttccttcttctttttcttcttc-attttttctta-cccgttgtctcttgttgctcctctttttcACATT------CACATT-GG--TCGTTGT---TCGTTTCA-TTTTATATCAT---CATCCGGTTGTTTCTTGTTT--------TCAATCTT---GCTTTTTTTCCGGCCTCTCGTCTT-----CCAAGATGGTTCAAGGATGTGGTAACAAATGCGTCAAGTACTTTTTCTGGCTCATCAACTTTCTGTTCTT
s cb4.chrX              17577054 372 - 21540570 GGGCACATACTT-------GAGCAGTAAGATGGCCAATTAGCATTTCTCAGG------CAATCTAGTCCCTACTTGCTCAATATCGCGTTTTTCGGTTTTCCCCTGCTCCTGTTGttttcttgtcttcgttttgt-cgccgccgctcc-ttttca-------cttctttttcttctt-----cttttttcttttgagaaTGCCTCCTCTTGCCCCTCTTTTTCCCATTCACACCCACATC-TTCCCCGTTgt---tcatctca-ttttttat---at-catccggtttttttcctctttcttccattcaacc--------tttttttcagactccaGTTCCATCTGCCAAGATGGTGAAAGGCTGCGGGAACAAATGTATCAAGTACTTCTTCTGGCTCATCAACCTTCTCTTTTT
i cb4.chrX              I 5482 C 0
s caeRem4.Crem_Contig15   326544 336 -  1794024 GGGCACATACTT-------GAGTAGTAAGATGGCCAATTAGCATTTCTCAGG------CAATCTAGTCCTT-CTTGCTCAATATCGc--ttttcgg------------------------ttatctttgttttct-cagtgccgctct-ttttca-------cttcttctttccttt-----tttgttgcttt---------ctcttgttgctcgtcttcttcCCATTCACACCCACATT-TG--CCGTTGT---TCATCTTA-TTTTATATCACATACATCCggttctctctcttttcattttttgcaaccTA-----TTTTTATTCAGCCATCCGTTCT-----TCACCATGGTTCAAGGGTGTGGAAACAAGTGCGTCAAGTACTTCTTCTGGATTATTAATCTCTTGTTCTT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    344864 345 +   484378 AGGCACATACTT-------GAGTAGTAAGATGGACAATTAGCATTTCTCCGG------CAATCGAGTACTA-CTTGCTCAATATCGc--ttttcgg------------------------attc-cttgttttct-tcgtcttgcttc-ttccca-------cttctccttcttcttcttctttttttgctct-ctttctccctcttgtagctcctctttttcacatTCACACTCACATTCTT--CCGttgt---tcatttca-ttttataacATACTCATCCggttttccttcttctc---ttgctCAACTTG------TTTCATTCAGCCATACGTTTC-----TCATCATGGTTCAAGGGTGCGGTAACAAATGTgtcaaatatttcttttggCTCATCaacctcctcttctt
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3497584 313 -  4147112 GGGCACATACTT-------GAGCAGTAAGATGGCCAATTAGCATTTCT----------CAATCTAGTCTTA-CTTGCTCAATATCgc--ttttcgg------------------------ttttgcttgttttct-tcttgctgctt--ttttca-------cttcttcttc----------ttttttgcttt---------ctcttgttactcttctttttcatattcacaCTCACATT-TC--CCGTTgttcatcatttcatttttataacGTTGTCATCCGgcttctctgttttt--------tcaacatt------GCTTATTCAGCC--------T-----TCAACATGGTTCAAGGATGTGGTAATAAGTGTGTGAAATACTTCTTCTGGCTAATCAATCTACTGTTTTt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   178351 331 +   357190 GAGCACGTACACATTCAGAAGGCAGTAAGATGACCAATTAGTATTTCTCGAG------CAATTTAGTTCTA-CGTGCTCAATATCGC--TTGTctt------------------------gtct-tttcttttct----------ttt-ttttcc-------tttctttttcttgttgtct-ttttttgtttc-----attttcattttcattttcatttttgttcttcatcttcatctt-ct--tcttctt---tttcttct-tttttttttattttccttttatcttcGTTTATAT------GTATAACCTTTCCGATTACTTTCCAGTT--------------TCACCATGGTTCAAGGATGTGGTAATAAGTGTATTAAATATGTCTTCTGGATCATCAATCTTCTATTCTT
i caeJap4.Scaffold17990 C 0 C 0

a score=6303.000000
s ce10.chrX              2820504 8 + 17718866 TGTAAGTT
s cb4.chrX              17577426 8 - 21540570 CGTAAGTT
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   326880 8 -  1794024 CGTAAGTT
i caeRem4.Crem_Contig15 C 0 I 43
s caeSp111.Scaffold582    345209 8 +   484378 cgtgAGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3497897 8 -  4147112 cgtgagtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   178682 0 +   357190 C

a score=-260.000000
s ce10.chrX              2820512 13 + 17718866 TTAATAAATTTGA
s caeSp111.Scaffold582    345217 13 +   484378 TCTGTATACCTAA
i caeSp111.Scaffold582  C 0 I 22
s caePb3.Scfld02_0       3497905 11 -  4147112 tt--caaaatcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   178682  0 +   357190 C
e cb4.chrX              17577434 33 - 21540570 I
e caeRem4.Crem_Contig15   326888 43 -  1794024 I

a score=-31.000000
s ce10.chrX              2820525 1 + 17718866 G
s caePb3.Scfld02_0       3497916 1 -  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   178682 0 +   357190 C
e cb4.chrX              17577434 33 - 21540570 I
e caeSp111.Scaffold582    345230 22 +   484378 I
e caeRem4.Crem_Contig15   326888 43 -  1794024 I

a score=0.000000
s ce10.chrX              2820526 617 + 17718866  
e caePb3.Scfld02_0       3497917   0 -  4147112 C
e caeJap4.Scaffold17990   178682   0 +   357190 C
e cb4.chrX              17577434  33 - 21540570 I
e caeSp111.Scaffold582    345230  22 +   484378 I
e caeRem4.Crem_Contig15   326888  43 -  1794024 I

a score=571.000000
s ce10.chrX              2821143 23 + 17718866 TGTTTTAATTTATATACTATTTT
s caePb3.Scfld02_0       3497917 23 -  4147112 tgtcTTGCTTTAATGATTCTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   178682  0 +   357190 C
e cb4.chrX              17577434 33 - 21540570 I
e caeSp111.Scaffold582    345230 22 +   484378 I
e caeRem4.Crem_Contig15   326888 43 -  1794024 I

a score=1146.000000
s ce10.chrX              2821166 2 + 17718866 CA
s cb4.chrX              17577467 2 - 21540570 CA
i cb4.chrX              I 33 C 0
s caeSp111.Scaffold582    345252 2 +   484378 CA
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0       3497940 2 -  4147112 CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   178682 0 +   357190 C
e caeRem4.Crem_Contig15   326888 43 -  1794024 I

a score=-243.000000
s ce10.chrX              2821168 2 + 17718866 TG
s cb4.chrX              17577469 2 - 21540570 GG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    345254 2 +   484378 GG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3497942 2 -  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   178682 2 +   357190 CA
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig15   326888 43 -  1794024 I

a score=252772.000000
s ce10.chrX              2821170 361 + 17718866 TTCTTGGGGCAATAATCGTCGGGCTCTCCATATGGATGCTAGTGGACAAGAATTCTCTGAATACGGTGGCAAGTACAGTGAAAGTTGATCTCTCCCAAATTTTGAGTCAAGTGAATATTCAACAGGTGATTCAACC----ATA-------ATTTTAAT----AATAACTTGTGAGTCAAAATC------TACAGCTCAACTCGTTCCTCTACGTTGCGATCGTAATCGGAGGGGCTCTTCTGGTTCTCGGATTCTTCGGTTGCTGTGGAAGTTGCTGCGAAAGCATCTGTGCTATTTCCATCTACTTCATCTTGGTCCTCATCCTCTTCGTTGTTGAAGTCGTCGCCATCGTTCTCTACTTTGTTAACAAGACTAACGTAAT-------------
s cb4.chrX              17577471 358 - 21540570 TCCTCGGAGCTGTCATCGTTGGTCTCTCCATTTGGATGCTCGTTGATAAAAACTCACTAACTACGGTAGCGAGTACGGTGAAAGTTGACTTGTCACAAGTCCTGAACCAGGTCAACATTCAACAGGTA-------------CA-------ATTTGAgt----tctgaaatccaaattgTTCTCATTCCTCTTAGATCAATACTTTCCTCTACGTGGCTCTCGTCATCGGAGGAGCTCTTCtgattctcggattcttcgGTTGTTGTGGAAGTTGCTGTGAGAGCGTTTGCGCCATTTCCATCTACTTCATCCTGGTTCTCATCCTTTTCGTTATCGAAGTCGTCGCCATCGTTCTCTACTTTGTCAAGAAAACTGAAGTAAA-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   326931 360 -  1794024 TTCTCGGAGCAGTTGTTGTTGGCCTCTCCATATGGATGCTTGTTGACAAAAATTCGCTTGCTACCGTAGCAAGTACGGTAAAAGTGGATTTGTCCCAGGTTCTAAACCAAGTTAACATCCAGCAggtaat-----------ca-------attttcag----cctcaTTCATAcaccatttttcttatttttagttgAACACATTCTTGTACGTTGCCATTGCTATTGGTGGAGCCCTTTTGATTCTCGGATTCTTTGGATGCTGTGGAAGTTGCTGTGAAAGTATCTGCGCTATTTCTGTCTACTTCATCTTAGTCCTCATTCTCTTCGTTGTGGAAATCGTTGCTATCGTTCTCTACTTTGTCAACAAAACCAAAGTAAA-------------
i caeRem4.Crem_Contig15 I 43 C 0
s caeSp111.Scaffold582    345256 357 +   484378 TACTTGGGTGCGCGATTGTCGGACTCTCTATCTGGTTGCTTGTTGACAAAAACTCATTGGCTACTGTAGCAAGTACGGTGAAAGTGGATCTCTCTCAGGTTCTAAGCCAAATCAACATTCAACAGGTA-------------CT-------ATTCACATCGAGTTCTGAATTTAAGGAAACATT----ATTTCAGTTCAACCTCATCTTATACGTCGCCCTTGCTATCGGTGGAGCTCTTCTCATTCTTGGATTCTTCGGATGTTGTGGAAGTTGCTGTGAAAGTGTCTGTGCAATTGTCATCTATTTCCTGTTGGTTCTCATCCTCTTCGTCATCGAAGTCATTGCTATCGTTCTGTACTttgtgaaaaagaatgatgtAA--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3497944 358 -  4147112 TTCTGGGATGTGTCATCGTTGGCCTCTCCATTTGGATGCTGGTAGATAAAAACTCACTGGCTACGGTGGCAAGTACGGTTAAAGTGGATCTAAGTCAAATTCTCAGTCAAGTCAATATCCAACAGGTA-------------CGTCAACAAATTTATAT----TTTAGAGTTTAGAGTAAA-------ATTCCAGCTGAACACCTTCTTGTACGTTGCTATTGTTATTGGTGGAGCTCTTCTCATTCTCGGATTCTTTGGATGCTGCGGTAGTTGTTGTGAAAGTGTCTGTGCCATCATCATCTACTTCATCTTGGTCCTCATCCTTTTCGTCGTTGAAATCGTCGCCATTGTTCTCTACTTCGTTAAAAAGAATGATGTAAG-------------
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17990   178684 384 +   357190 TCCTTGGAGCTATAATTGTTGGGCTTTGTATTTGGATGCTcgtcgacaaaaattcaataGCTACAGTTGCAAGCACAGTGAAATTGGACATTTCTCAAGTTCTAAATCAAGTAAATGTAGAGCAGGTAAGGTGACCatagaaa-------attagaaatgc-ATTGAATAATAAATCGCTTTC---AATTCAAGATTAACATGTTCCTTTACGTTGCAATTGCTCTCGGTGGAGCCCTATTGATTCTCGGATTCTTCGGATGCTGTGGAAGTTGCTGTGAAAGTGTCTGCGCCATATCAATTTACTTCCTGCTTGTCCTGATCCTCTTCGTTATCGAAATTATCGCCATCGTTTTATATTTTGTCAACAAGACTAATGTATGTACTCGTACTAGT
i caeJap4.Scaffold17990 C 0 C 0

a score=-10814.000000
s ce10.chrX              2821531 32 + 17718866 ----------------------GTGACGC-CTTCCAGATGCTCTCATAAATTCCA
s cb4.chrX              17577829 19 - 21540570 ------------------------------------AATTTGTAGattgtctaca
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig15   327291 22 -  1794024 ---------------------------------CTCATTCCCCGTATCTGTTACA
i caeRem4.Crem_Contig15 C 0 I 10
s caeSp111.Scaffold582    345613 24 +   484378 -------------------------------GTACAAGTTCATTGATGAATTCCA
i caeSp111.Scaffold582  C 0 I 5
s caeJap4.Scaffold17990   179068 52 +   357190 GTTAGCAAGAACACATTTCTAGATAGTGCAAGaacaatttttgtaatttgcT---
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3498302 38 -  4147112 I

a score=95449.000000
s ce10.chrX              2821563 114 + 17718866 TG------TTTC-AGCTTCAACAAGGGTTCCAAACTATTTGGCGCGACGAACTGGTTTCAAAGTATAACACTCAACAACAGATTCACCAAGTGCTCGACCAAATCCAATCTAGCGTGAGTT
s cb4.chrX              17577873 115 - 21540570 ca------tttctAGCTTCAACAAGGCCTCACAACCATCTGGCGAGACGAGCTCGTTTCCAAGTACAACAACAACCAACAAATCCATCAAGCTTTGGACCAACTTCAGTCAAGTGTGAGTT
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig15   327323 114 -  1794024 TA------TTTC-AGCTTCAACAAGGTTTCGTCACTATATGGCGTGACGAGCTCGTTTCCAAGTACACTACTCAACAACAAATTCATCAAGTCCTCGACCAAATTCAGTCTAGCGTGAGTT
i caeRem4.Crem_Contig15 I 10 C 0
s caeSp111.Scaffold582    345642 120 +   484378 tgattcattttc-agcttctaCAAGGTTTTGTAACCGTCTGGCGCGAGGAGCTCGTGTCCAAGTACAACACCCAACAACAAGTCCATCAAGTCCTCGATCAAATTCAGTCTAGCGTGAGTT
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3498340 114 -  4147112 TG------TTTC-AGCTTCAACAAGGATTTGTAACCGTCTGGCGTGACGAACTCGTGTCTAAGTACAACTCCCAACAGCAAATCCGCCAAGTTCTTGACCAGATTCAGACTAGCGTGAGTT
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17990   179120 114 +   357190 ------CTTTTC-AGCTCCAACAAGCGTTTGTTCAAGTCTGGCGGGACGAGCTCGTGTCCAAGTACTCGTCTCAGCAGCAAATTCACCAAGTTCTCGATCAGATTCATACTAGTGTGAGTT
i caeJap4.Scaffold17990 C 0 I 1174

a score=-17388.000000
s ce10.chrX              2821677 33 + 17718866 ----------ATAATAT---TTTTAGATTTTCACAA----------------GATCAGCTT-C--------
s cb4.chrX              17577988 56 - 21540570 ----------TTGTTG----ATtctgagaaacaaaaattcccTAGAATATTAATTAACCTC-CCAGGATAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   327437 57 -  1794024 ----------TTGCCAC-GTCTTCTCAACCATATATTATCATAAGGCTCTTTGTTTACGTCTTCAAGA---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    345762 51 +   484378 GTAGTTTGATTTATCAT-CGTTCCTGTCTATCCTAA----------AGATCGGTTTATCAG-T--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3498454 66 -  4147112 GTAGTTTGTCTTATCACACGCTTCTTATAACCATAACA-CCTCATTAGCCTTGTTTaccat-ttaaaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   179234 1174 +   357190 I

a score=164542.000000
s ce10.chrX              2821710 320 + 17718866 AA----TCA-A---AGTATGCAA--TTTTAGCTTCAATGCTGTGGAGCTTCTGGATGCAGTGACTACATACCCTACGGAGCATTCCCAACCTCCTGCCAATGTGCAACTATCCAACAAGTAACTT-------------------------------------GTAAAGC-------------------------ATTTGAGCTCAGA-CTCTAACCGTTCCAAATTTAGGCT-GGATGCGCTACTGTTATCTGGAACTCATTTGAAAGCAGCCTGATTTACGTCGCCTTCGTTGGAATCATCATCCTTTTTGTCGAGCTGCTTGCGATGATATTCTCTTGTATCATTATTGGGGCCGTCAAAGAGAAACGCTCCCAAGCTTAA-A----TAATTCAATT
s cb4.chrX              17578044 354 - 21540570 AA----TAATA---AATATTATTA-TTTCAGCTGCAATGCTGTGGAGCCTCGGGTTGTAGCGACTACATGGTCTACGGCGCTTTCCCAACCTCGTGCCAATGTGCCACACTTTCACAggtgaatgtttgaaaaa------------------------gcTAGGAGGACGAAAACCcgaaggaaaaaaacaaacac------tGACT-CGTAAACAAACCTAATTTACAGCAAGGATGCGCCACACTCTTCTGGAATGCGTTTCAAACCAACCTCATCTATGTCGCCTTCGTCGGAATCATTGTCTTGTTTGTTGAGGCTCTTGCTATGATCTTCTCATGTATCATTATCAACGCTGTTAAGGCAAAACGCAACGAAGCATAAGA---ataact---tc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   327494 382 -  1794024 AA----TAATA---AGTATGAAAGTTTTCAGCTGCAATGCTGTGGAGCCGCCGGATGCAGTGACTATGTTCAGTACGGAGCCTTCCCAACTTCTTGCCAGTGTGCCACTATCCAACAGGTGAATATTCAAACAGAGAGAATTCATGAGAGTGGAGGTCGTTAATAAAACGAAAACACGAGAAAAACAGCGTGACAC------TCAGGATGTAAACAAACCTAATTTTCAGCCGGGATGTGCAACGTTGCTTTGGACCGCTTTCGAGAACAACCTCATTTATGTTGCTTTTGTCGGTATTATCATTCTCTTTGTTGAAATTCTCGCTATGATCTTCTCGTGCATTATCATTGGAGCTGTCAGAGAGAAACGCGCGCAAGCTTAA-A---TTAAATCAGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    345813 370 +   484378 ------CTATA---ACTGTACGA--TTTCAGCTGCAATGCTGTGGAGCCGCTGGTTGCAGTGATTATGTTCAATACGGAGCTTTCCCAACCTCGTGCCAATGTGCCACTGTTCAACAGGTGAATCATTAGAGTCAGCAGttctgggaaaaaagag-------aaaaaac------acgGAGAGAATAACGTGACATGTTGGGTGGCT-CGTAAACAAACCTAATTTTCAGCAAGGATGTGCCACTCTCCTTTGGAATGCTTTCCAAAACAACCTTATCTATGTCGCATTTGTCTTGATCATCGTCTTGTTTGTGGAAGTTCTCGCCATGATTTTTGCATGCATCATTCGCGGAGCCGTTAAGGAGAAATGCTCTCAAGCTTGA-A---TGAACTGAATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3498520 360 -  4147112 aaattctgaga---attctttga--tttcagcTGCAATGCTGTGGTGCCGCTGGCTGTAGTGACTATGTACAATTCGGAGCCTTCCCCGCCTCATGCCAATGTGCCACTCTCCAACAGGTGATTATTTATAGTCAGCGATCcttagaggaaa----------aaaaaac------aaggaggGAA-----------ATGGGATGAGT-AGTAAACAAACCTAATTTTCAGCAAGGATGCGCTAACCTCCTCTGGACTGCCTTCCAAAACAACCTTATCTACGTTGCCTTCGTGGGAATCATCGTTTTGTTTGTTGAGGTTTTGGCAATGATCTTCGCTTGCATAATCCGAGGAGCTGTAAAGGAGAAACGTTCCCAGGCCTAA------TAATTGAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   180408 321 +   357190 AA----TTAAAGTTAATTTTAAC--TTTCAGCTGAACTGCTGCGGAGCCTCGGGATGCACTGACTTTGCTCAGTACGG---CTTTCCCGCGTCTTGTCAATGCGCCACTATCCAACAGGTGAATTTTCTACG------------------------------GAAAAAT------------------------CAT--------AAC-AACTAACCAAAATAACTTGCAGCAAGGATGCGCCACTGTAATATGGGCAGCTTTTGAGAACAACCTCATCTACGTGGCATTTGTGGGAATTATTGTTCTCTTTGTGGAGCTACTCGCAATGATCTTCTCTTGTATTATCATTTCCGCTGTCCGCGAGAAACGCAATCAGGCTTGA-AGTTTCAATT-----
i caeJap4.Scaffold17990 I 1174 I 372

a score=-4836.000000
s ce10.chrX              2822030 13 + 17718866 GGT-CTTTGTACTT
s cb4.chrX              17578398 13 - 21540570 tga-ttttttttcc
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   327876 13 -  1794024 TGA-CGATCTGCAC
i caeRem4.Crem_Contig15 C 0 I 512
s caeSp111.Scaffold582    346183  9 +   484378 TTTGCTCTT-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3498880  8 -  4147112 TGT-TTCTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   180729 372 +   357190 I

a score=-1080.000000
s ce10.chrX              2822043 1 + 17718866 G-
s cb4.chrX              17578412 1 - 21540570 -t
i cb4.chrX              I 1 I 1059
s caeSp111.Scaffold582    346192 1 +   484378 G-
i caeSp111.Scaffold582  C 0 I 480
s caePb3.Scfld02_0       3498888 1 -  4147112 G-
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17990   180729 372 +   357190 I
e caeRem4.Crem_Contig15   327889 512 -  1794024 I

a score=0.000000
s ce10.chrX              2822044 2 + 17718866 TT
e caePb3.Scfld02_0       3498889 4 -  4147112 I
e caeJap4.Scaffold17990   180729 372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I
e caeSp111.Scaffold582    346193 480 +   484378 I
e caeRem4.Crem_Contig15   327889 512 -  1794024 I

a score=1065.000000
s ce10.chrX              2822046 305 + 17718866 TATGCTTGGCCGTGTTTCACGTTTTGGTCATGAGCCATGAGTTTTCAATTTTATCAACAAAAACATTTCAAACGAAATTAAGAACACTAGAACTAACTGTAAAATTGCCTGCAAAGATTTGCAAAAAATtagacccaaaatg--------tgctcggatg---agcgaatttcgcaataaaacttcttaa------cattttccaagaaacgttttatttcggtttgacactttattaaa-----------aatgcctaattt-tttctgaaacatccaa----ttttggtcaattttccgtgtcgcaacagtct---gaagtta-catttttaaaacaatt
s caePb3.Scfld02_0       3498893 317 -  4147112 ---------CAACGTTCCATAACTTGTTTTCGAAACCAGAGCTCTCAAGTTT-----CGATAAGACT------GAAAGTATGACAGTTTCAAGATACTGTTAAAATACCAATAa-----tgaaaaaacctaaaactgaTATATTTTTCGCTTCTCAGATATTCAgccaaaaagtaaaaacaattttttgaagctgctAGTATCAAAGTTATGCTTTATTTTCGATTAGAGTTTTGCGAAACGCATTAACTCAAAGCATAATTTCTTTATGACAATTTCGATAACTTTGAATCATTATTCTGCTTTACAATCCTCTTccgaaattagaatttttaaaGCTGTT
i caePb3.Scfld02_0      I 4 I 325
e caeJap4.Scaffold17990   180729 372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I
e caeSp111.Scaffold582    346193 480 +   484378 I
e caeRem4.Crem_Contig15   327889 512 -  1794024 I

a score=0.000000
s ce10.chrX              2822351 1106 + 17718866  
e caePb3.Scfld02_0       3499210  325 -  4147112 I
e caeJap4.Scaffold17990   180729  372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I
e caeSp111.Scaffold582    346193  480 +   484378 I
e caeRem4.Crem_Contig15   327889  512 -  1794024 I

a score=68.000000
s ce10.chrX              2823457 3 + 17718866 CTA
s caeSp111.Scaffold582    346673 3 +   484378 ctt
i caeSp111.Scaffold582  I 480 C 0
e caePb3.Scfld02_0       3499210 325 -  4147112 I
e caeJap4.Scaffold17990   180729 372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I
e caeRem4.Crem_Contig15   327889 512 -  1794024 I

a score=-2.000000
s ce10.chrX              2823460 2 + 17718866 -TC
s caeSp111.Scaffold582    346676 3 +   484378 tct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3499535 2 -  4147112 -tt
i caePb3.Scfld02_0      I 325 C 0
e caeJap4.Scaffold17990   180729 372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I
e caeRem4.Crem_Contig15   327889 512 -  1794024 I

a score=4076.000000
s ce10.chrX              2823462 102 + 17718866 TCATGAGTTTCATCGCCAAAA-TAAAGTTAATCCAAATACAATTTTACTTCCC---AGAAAGATATATAATTAAATACAGTGATA--AATCGTT------GGTTACAAAAAAAT----------------------------------------------------
s caeRem4.Crem_Contig15   328401 133 -  1794024 TCAcgatttttt--gtcaaat-aaaTGTTAAACAAAAGACAGAATTATATCCC-------------AAAGTTAGATAAATAGGTGCAAACGAATTT---AAATTGGATAGAAATATGTGTGACAAGTGACGA-------TGAAT-------ACTTTTTCTGGCAAC
i caeRem4.Crem_Contig15 I 512 C 0
s caeSp111.Scaffold582    346679 151 +   484378 tcaaaattttttcagccaaaTAAAATGTTAAGCAAAAGACAAAGTTAGTTCCCCCCAGAA------GACATAAATATAATTGATG--AATTGATTtgcgaaagaaaaaagaaaaatgagtgacAAGGTAAGAATAAATATAAGA-------AATATCGACGACAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3499537 149 -  4147112 tcatgattttttt-gccAAAT-AAATGTTAATCGAAAGATGAAGTTAGTTCCC-------------AAAGTAAATATCATTGATG--aattgttttgtgaaaaaagagaaaaataagatgGATGAGTGACAAGATAGAGTAAAATGCTATGAATATGGACGACGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   180729 372 +   357190 I
e cb4.chrX              17578413 1059 - 21540570 I

a score=958.000000
s ce10.chrX              2823564 3 + 17718866 AAT
s cb4.chrX              17579472 3 - 21540570 AGT
i cb4.chrX              I 1059 C 0
s caeRem4.Crem_Contig15   328534 3 -  1794024 Tat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    346830 3 +   484378 Tat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3499686 3 -  4147112 TAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   180729 372 +   357190 I

a score=273244.000000
s ce10.chrX              2823567 450 + 17718866  
s cb4.chrX              17579475 470 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   328537 469 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    346833 475 +   484378  
i caeSp111.Scaffold582  C 0 I 186
s caePb3.Scfld02_0       3499689 461 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   181101 441 +   357190  
i caeJap4.Scaffold17990 I 372 C 0

a score=815.000000
s ce10.chrX              2824017 3 + 17718866 AAC
s caeRem4.Crem_Contig15   329006 3 -  1794024 CAC
i caeRem4.Crem_Contig15 C 0 I 222
s caePb3.Scfld02_0       3500150 3 -  4147112 TAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   181542 3 +   357190 TAC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17579945 0 - 21540570 C
e caeSp111.Scaffold582    347308 186 +   484378 I

a score=-150.000000
s ce10.chrX              2824020 3 + 17718866 GTA
s caePb3.Scfld02_0       3500153 3 -  4147112 TAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   181545 3 +   357190 ATA
i caeJap4.Scaffold17990 C 0 I 9
e cb4.chrX              17579945 0 - 21540570 C
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-18998.000000
s ce10.chrX              2824023 357 + 17718866 TAAGAGTATAGTACTTCAAAAAATGGTACATCACATCCGGCTAACTTTCTGAAAAAGGAATCAAAGTTTGTTGGATTTTACtgaaggtggagtagagtccaaaactttttttggttttaaatgacagaaatggaaccgtagtgactataaaaaattataaaactttgctaattttctaatatattttgttttattt---------tgaacagaagaaattggctaattatttatgaaatcacgcgcaaattagtgacgacatttttgtcatttttttgctttccagctataatgattggggtttctctgcttattttattgaatatttgatgtgacacacagtttcccaattttgaaaacattttt------------
s cb4.chrX              17579945 183 - 21540570 --GAGGCATTGA----------------------------------TTTTGAATAGAAAG-----------------ATA---------GAGTAGAG------------------GTGAAAAGGTGGTGTTAG---TGAAACACTTGGTGAATA------------GAAAGGGATTAGACAGGTGATATCATATTTAGGCTTCT-TGAATGttacgaaat---------tttga--------------tttagtgaaaaa----------------------------------------------------aaatca-taaacaCAAG-----------GAAGTCCTAACAATGGAAACAATTTT------------
i cb4.chrX              C 0 I 31
s caePb3.Scfld02_0       3500156 252 -  4147112 TTTGGGTGTTGAA--------------------------------TTTGTGAATAGAGAGGGTAAAT--------GCATACCAAATGC-GGATAAAG------------------GTTATTTCGTAATACTGGA--GGGATTAATTCGAGAATATCATA----TTTAATGTGACTCAAATGGACGATTTCTCATTGGGCATTGTATGAGGATTAGGAAATGGCTGG--AGTTGAGCAATGATCT----TTTGGGGACTAACCTTTTA-----------------------------------------GTTTATGTTA-TGAATACCA-------------ATGTTGTACAGAAAAACGCAAATTTGGTTATTACCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   181548   9 +   357190 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=25.000000
s ce10.chrX              2824380 49 + 17718866 tggaaaa----TGAAAGTTGTTAACCAGAAAGAAATTCATGTATCAaaaacac
s caePb3.Scfld02_0       3500408 49 -  4147112 AGAAAAACCCGTAAATTTTGAAAGGCAGAAGGCAAGTGGGA----AAGAATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   181548  9 +   357190 I
e cb4.chrX              17580128 31 - 21540570 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-629.000000
s ce10.chrX              2824429 21 + 17718866 agaaaatgtataaaatgacgt
s cb4.chrX              17580159 21 - 21540570 ataaaatatacaaaaaaacgt
i cb4.chrX              I 31 I 45
s caePb3.Scfld02_0       3500457 11 -  4147112 --AGGTCATGGAT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   181548  9 +   357190 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-540.000000
s ce10.chrX              2824450 29 + 17718866 cactaatttgctggtga-attttatataat------
s caePb3.Scfld02_0       3500468 34 -  4147112 --CTCAACTATTAGTAATATCTCTTGTTACCCTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   181548  9 +   357190 I
e cb4.chrX              17580180 45 - 21540570 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=896.000000
s ce10.chrX              2824479 22 + 17718866 gagcataattttgcaaacttga
s cb4.chrX              17580225 21 - 21540570 -gagctcatTTGTCAAATTTCC
i cb4.chrX              I 45 C 0
s caePb3.Scfld02_0       3500502 22 -  4147112 TAGTATCATTTTGCAGTATTGA
i caePb3.Scfld02_0      C 0 I 129
e caeJap4.Scaffold17990   181548  9 +   357190 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-385.000000
s ce10.chrX              2824501 216 + 17718866 gaaatcattaaaaactgaaaataatttta--------taaattcattattttttattttcggggattacggttttctaatattcacagcaaaaTTGTCAAGTA-----AAAATTC-----AAAATCTGCTTTATTCAAAAACTTTTTTAGTAGCCGTACCATATAAATG---CTTAACCAATTTACCAACAAATTCAAAAAAAAAactttttttgatcaactcagaagtatttttat
s cb4.chrX              17580246 208 - 21540570 GATCTCTTTGAAAACTCTAGAGGATGCAAAACaggcctagattgaaaactttgcactcacaggg------gtttttgaaaattactagT----TTCTCAGCTATTTGGGGAATTCTgtaagacacctgtttttc------acgttttcagta------caaaacgaGTGTGTCTTTTAGAATTCcctaaatatctgaaaaactagacatttt-----caatctag--gtgtGTTTCG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3500524 129 -  4147112 I
e caeJap4.Scaffold17990   181548   9 +   357190 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-10550.000000
s ce10.chrX              2824717 203 + 17718866 caatattcaaaaaagcaatttttttacaaataattttttttttcaagaggagattttttatttttgaaacgtcgtaacttagctgaactagcatgcattcccgcattagaaaaaatcgatatgccactaaaagaaattataattttttttttcacccaggacttatCCCCCCAACAAGTAGCATTACAGCATTACAATTT--CAA
s cb4.chrX              17580454 104 - 21540570 CActgtccaa------aatttt---------------------caaagtga--------------------tcgcaAACTTGGCCGCCGAGC-------CCCATAAT-------------------CTGAAAGTGGTTAAATTTTC------------------------TTGACTCATA----CATTATATTCACATTgaacgt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3500653  92 -  4147112 CATGACACAACGGattagtttt-----------------------------------------------------------------------------tccatttt-------------------ttttatgtgGTCTGACTTTT------------GAACGTA-----TTGGCAATTAGAACCCCTATTTTCATATGTATAAT
i caePb3.Scfld02_0      I 129 C 0
e caeJap4.Scaffold17990   181548   9 +   357190 I
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-879.000000
s ce10.chrX              2824920 29 + 17718866 TTTAAACTTTTGAACTTTTCTGGGAAATT-
s cb4.chrX              17580558 26 - 21540570 tttcaaatattcaactGTTTTCCTAT----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3500745 29 -  4147112 GTTAGATTCTTTGgctgtttttttgaact-
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17990   181557 24 +   357190 TTTAAGCTATT------TTTCCGGGGATTA
i caeJap4.Scaffold17990 I 9 C 0
e caeSp111.Scaffold582    347308 186 +   484378 I
e caeRem4.Crem_Contig15   329009 222 -  1794024 I

a score=-3591.000000
s ce10.chrX              2824949 16 + 17718866 ATACAACTCA-GCTGCT
s cb4.chrX              17580584 17 - 21540570 AAAGGGCTCATATCTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   329231 16 -  1794024 ACACAACTCA-GTCACT
i caeRem4.Crem_Contig15 I 222 C 0
s caePb3.Scfld02_0       3500782 15 -  4147112 --ATCGTTCGTGTCTTC
i caePb3.Scfld02_0      I 8 I 1
s caeJap4.Scaffold17990   181581  6 +   357190 GTAAAA-----------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    347308 186 +   484378 I

a score=226945.000000
s ce10.chrX              2824965 345 + 17718866 TGTACCTCCATCAATGTTTTCCTCGGGTCCCGCCTAGTCGTCGACTTCGCCCGCACCGTTGCCGATCTACGGATCGATGGGCTGCTCCTGGTCTCTTCGTCCTCGGCCACATCATCGAGACGACCACCACCCGCCTGAATAACTCACACTATTCTCATATTCTATCAAGATAGATTGTGTGCGTACGCACACACACACTCACTTTGCATCGTGGGAAACCGGATAATTCGAGCAGTGTGCGGAATACGTCGGTAATCCGGATATTGTCTTTGGCCGACACCTCGATATAACGAACGTCGGACGATAAGCGATTTGTGAATGCTTTCGCCGTTTCTTCGTATATCT
s cb4.chrX              17580601 320 - 21540570 --TACCTCTAGATAAGTTCTACGACTCTCCCTCTTGGAGCTCGATTTGGCTCGAACAGTAGCCGATCTTCTGATAGTGGGACTATTCTTAGTCTCTTCATCCTCAGCGACATCGTCCAATCCACCGCCTCCAGCCTAAACAACCCT-----CCAATATTTTCTAT-----ACAGCGCTCTCTC-------------GCTCACTTTGCATCGTGGGAATCCGGACAACTCGAGCAGGGTACGGAATATCTCAGTAATCCGGATATTATCCTTTGCCGACACCTCAACGTATCGCACGTCGGATGACAAGCGGCTTGTGAAGGCCTTCGCAGTGTCCTCGAAGATCT
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig15   329247 322 -  1794024 --CACATCCATAAGAGCCCTACGCGGATCCCGTTTAGTTGTAGACTTCGCGCGCACCGTAGCCGATCTTCTGATCGATGAACTGCTTCTCGTTTCCTCGTCTTCAACAACATCGTCCAATCTGCCACCTCCTGCCTGAATTACTATA---GCGGTTAATCCCGAA-----GAAATTGTGTATC-------------GCTCACTTTGCATCGTGGGAATCCGGATAATTCGAGAAGAGTGCGGAATACATCAGTAATCCTGATATTGTCTTTTGCAGAGACCTCGATATAACGCACGTCGGATGACAAACGGCTAGTGAATGCTTTTGCAGTCTCCTCatagatct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    347494 324 +   484378 TATACCTCGATTAGAGCTTTTCGAGCGTCACGTTTTGTTGAAGATTTTGCGCGCACAGTGGCTGATCTTCTGATCGAAGGGCTGCTCCGAGTTTCCTCGTCCTCGACGACATCGTCCAAACGGCCACCTCCTGCCTGAAATG---------TGTACATTCTCAATTAGCGAAGAATGTGTATAG------------CCTCACTTTGCAGCGTGGGAATCCGGACAATTCGAGTAAAGTGCGGAATACATCAGTAATCCGGATATTATCTTTTGCAGAGACCTCGATGTAGCGAACATCAGAGGACAAGCGGCTAGTGAAGGCTTTCGCAGTTTCCTCGTAAATCT
i caeSp111.Scaffold582  I 186 I 3
s caePb3.Scfld02_0       3500798 323 -  4147112 TATACCTCAATCAAAGCTTGACGTGGTTCACGTTTAGTTGTAGACTTGGCACGCACTGTTGCCGATCTTCTGATCGATGGGCTGCTCCGAGTCTCCTCGTCTTCGGCAACATCGTCCAAACGGCCACCTCCTGCCTGAAAAG---------CACACATTCACAAATGAGCAGGAATGTGTATA-------------TCTCACTTTGCATCGTGGGAATCCGGACATTTCAAGAAGTGTGCGGAATACATCAGTAATCCGGATATTATCCTTTGCAGAGACTTCAATGTAGCGAACATCCGAAGACAAGCGGCTGGTGAAAGCCTTGGCTGTTTCCTCGTAGATCT
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold17990   181587 316 +   357190 ---ACCTGTAAGATAGATTTTCGCGAATCTCTTTTTGAAGACGACTTGGCGCGAACCGTGGCAGACCTACGAATCGTGGGACTGCTTTTGGCTTCTTCGTCTTCGGCAACATCGTCCAAACGGCCACCTCCTGCCTAAAAGGT--------TTGCAATATTCAAG-----GAAGGTTTGGTCT-------------GCTCACTTTGCAGCGTGGGAACCCGGATAATTCAAGAAGTGTGCGGAAAATGTCATTAATTCTAATATTGTCCTTCGCAGACACTTCGATGTATCGAACATCTGACGACAAGCGATTAGTAAATGCTTTTGCAGTCTCCTCGTATATCT
i caeJap4.Scaffold17990 C 0 C 0

a score=-301.000000
s ce10.chrX              2825310 25 + 17718866 TTAAATGGGTACCAGAAAAAAATCT
s caeJap4.Scaffold17990   181903 25 +   357190 TAAACTGTTTTGTTGTAAGGTTTCC
i caeJap4.Scaffold17990 C 0 I 37
e caePb3.Scfld02_0       3501121  3 -  4147112 I
e cb4.chrX              17580921 36 - 21540570 I
e caeSp111.Scaffold582    347818  3 +   484378 I
e caeRem4.Crem_Contig15   329569  0 -  1794024 C

a score=52.000000
s ce10.chrX              2825335 20 + 17718866 CAAAAGAAAATTCAGAAATT
s caeRem4.Crem_Contig15   329569 20 -  1794024 gaaaatgaagagctgaagtt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    347821 11 +   484378 ---------CTACGTAACTT
i caeSp111.Scaffold582  I 3 I 27
s caePb3.Scfld02_0       3501124 11 -  4147112 ---------GTTTAGAAGTT
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17990   181928 37 +   357190 I
e cb4.chrX              17580921 36 - 21540570 I

a score=180.000000
s ce10.chrX              2825355 1 + 17718866 T
s caeRem4.Crem_Contig15   329589 1 -  1794024 t
i caeRem4.Crem_Contig15 C 0 I 40
s caePb3.Scfld02_0       3501135 1 -  4147112 C
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17990   181965 1 +   357190 T
i caeJap4.Scaffold17990 I 37 C 0
e cb4.chrX              17580921 36 - 21540570 I
e caeSp111.Scaffold582    347832 27 +   484378 I

a score=251338.000000
s ce10.chrX              2825356 370 + 17718866 TTTACCTTCTTATTTTCAACATCGCATTTGTTTCCCACAACAACAATCGGCAGCTCATTCAAATCACTACGCCTTGAGCATATTTCTTGCCATATATCCGACATCTGAAAATGATA----TGAAATC---TTGTCGCATTAGTAGCTGCTCATCTATCCTTCGCACA-------TGTGTGAAGACTTAGTCTATTTTTGC--TCAAAACTCGCTGCTAATTCGGAAAT-----GTG--GGTTACGGTATCGT--TAACTTGCCTCCTTGAAGCTTGTGACGTCGTCCACCGAGAAAACTAGAAGAAAGGCCGACGCTGATGCAATCGAAAGACGTCTCATGTCGGGAAAATTGAAGTTGGTATCCAAAATGTCTAGTGGTAATGGGACACCCTGA
s cb4.chrX              17580957 317 - 21540570 CTCACCTTTTTGTTCTCCACGTCGCACTTGTTGCCAACTACCACTATTGGCAGCTCGTTGAGATCGGAGCGACGCGTGCAAATCTCTTGCCACAAATCCGACATCTGAAATTGC------TCA-----------CGCATTAGC--TT-----------------------------------GATTTGGTCTATTT-----------CCGTGGTGGCGGATCGGAAAT-----CCGGTGGATACTGTAACTA--------ACCTCCTTGAAGCTTGTAACGTCATCCACAGAGAAGACAAGAAGAAACGCCGAAGCGGATGCGATCGAAAGACGTCGCATATCAGGAAAGTTGAAGTTGGTATCCAAAATGTCCAGTGGTAATGGGATACCCTGA
i cb4.chrX              I 36 I 1033
s caeRem4.Crem_Contig15   329630 376 -  1794024 TTCACCTTCTTGTTTTCAACGTCGCATTTGTTTCCCACGACCACTATTGGCAACTCGTTAAGATCACTACGTCTTGAGCATATTTCTTGCCATATATccgacatctgaaaatgtgg---atcAAATC---TTGTCACATTAGT--GTGAGTGATGTGCCCACGCCTG--ATAACTGAACGAAGACTTAGTCTATTTATGT--TCTCAACATGTCTCTAGTTCGGAAAT-----GCG--GGTTACGGTATTTAGATGTCTTGCCTCTTTAAAACTCGTGACGTCATCcactgaaaaaacgagaagaaacgCTGATGCTGATGTAATGGAGAGCCGTCGCATATCAGGAAAATTGAAGTTGGTATCCAAAATGTCCAGTGGTAATGGGACACcctga
i caeRem4.Crem_Contig15 I 40 I 6
s caeSp111.Scaffold582    347859 376 +   484378 ATCACCTTCTTGTTCTCAACATCACATTTGTTTCCCACAACCACTATTGGCAACTCGTTAAGATCTTTACGTCTTGAACAAATCTCTTGCCATATATCTGACATCTGGAAACGAG-----GGAAATA---TTGTCGCATTAATAGAAGCATATCAAGCCCCCGCGTGTAATATGTGAACGAAGACTTAGTCTATTTATGT--TCTGAGCGCGTTGCTAGTTCGGAAAT-----GCG--TCTTACGGTATCTC--TGACTTGCCTCTTTGAAGCTCGTGACGTCATCAACAGAgaagacaagaagaaaagcgGATGCTGATGCAATTGAAAGACGTCTCATATCAGGAAAGTTGAAATTGGTATCCAATATGTCCAGTGGTAATGAGACACCCttg
i caeSp111.Scaffold582  I 27 I 5
s caePb3.Scfld02_0       3501163 374 -  4147112 GTAACCTTCTTGTTTTCGACATCACATTTGTTTCCCACAACCACTATTGGCAATTCGTTGAGATCATTGCGTCGAGAGCAAATTTCTTGCCATATATCcgacatctgaaaatgga-----tcAAATC---TTGTCGCATTAGT--CCCTCTAATAAGCCCACGCGTG--ATTTCGGAACGAAGACTTAGTCTATTTATGTTATATAAGCGTGTTGCTAGTTCGGAAAT-----GCG--TCTTACGGTATCTC--TGACTTGCCTCTTTGAAACTAGTGACATCATCAACAGAGAAAACGAGCAGAAACGCTGATGCTGATGCGATTGAAAGTCTTCTCATATCAGGAAAGTTGAAGTTGGTATCCAAAATGTCCAGTGGTAATGGGACACCCTGA
i caePb3.Scfld02_0      I 27 I 5
s caeJap4.Scaffold17990   181966 326 +   357190 TTcacctttttattttcaacgTCACACTTGTTGCCCACAACTACGATTGGCAGCTCGCTCAAATCTTTGCGCCGCGAGCAGATCTCTTGCCAGATATCCGACATCTGGAATAACCGATTATGAAATTATGTTATCACATTAGC--------------------------------------------------TCCGTGT---------------CCATTACGGAAGTTGATGACA--GCCTACAGTAGATC--TGACTTGCCTCTTTAAAACTCGTCACATCGTCAACTGAGAAAACCAGTAGGAATGCAGAGGCAGAGGCGATGGAAAGCCGGCGCATGTCCGGAAAGTTGAAGTTGGTATCCAGAATGTCCAAAGGAAGTGGAACACCCTAA
i caeJap4.Scaffold17990 C 0 C 0

a score=1021.000000
s ce10.chrX              2825726 3 + 17718866 AAC
s caeRem4.Crem_Contig15   330012 3 -  1794024 gaa
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    348240 3 +   484378 aaa
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3501542 3 -  4147112 AAA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17990   182292 3 +   357190 AAC
i caeJap4.Scaffold17990 C 0 I 232
e cb4.chrX              17581274 1033 - 21540570 I

a score=6341.000000
s ce10.chrX              2825729 44 + 17718866 ATT---AATGTGAATCAA---------CTTTCCATTTGTTCTTTGGAAGTTTAAAG
s caeRem4.Crem_Contig15   330015 42 -  1794024 gttttcaaagtgaATTCA--GTACACGTCTCTTGTTTGTT------------AAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    348243 56 +   484378 gtttcGAAAGTGAAACAAATGTAGgaactttttgtttgttcTCTCAAAGTTTAAAG
i caeSp111.Scaffold582  C 0 I 122
s caePb3.Scfld02_0       3501545 56 -  4147112 GTTTCGTGAGTGAATCAAGAGAAGAGATGTTTTATTTGTTCTATCGAAGTTGAAAG
i caePb3.Scfld02_0      C 0 I 141
e caeJap4.Scaffold17990   182295 232 +   357190 I
e cb4.chrX              17581274 1033 - 21540570 I

a score=794.000000
s ce10.chrX              2825773 18 + 17718866 GGAGGGGGGAAGGGTAGA
s caeRem4.Crem_Contig15   330057 18 -  1794024 AGAAGTTGAAAGGATAGA
i caeRem4.Crem_Contig15 C 0 I 144
e caePb3.Scfld02_0       3501601 141 -  4147112 I
e caeJap4.Scaffold17990   182295 232 +   357190 I
e cb4.chrX              17581274 1033 - 21540570 I
e caeSp111.Scaffold582    348299 122 +   484378 I

a score=0.000000
s ce10.chrX              2825791 840 + 17718866  
e caePb3.Scfld02_0       3501601 141 -  4147112 I
e caeJap4.Scaffold17990   182295 232 +   357190 I
e cb4.chrX              17581274 1033 - 21540570 I
e caeSp111.Scaffold582    348299 122 +   484378 I
e caeRem4.Crem_Contig15   330075 144 -  1794024 I

a score=652.000000
s ce10.chrX              2826631 12 + 17718866 CAAAGATTTGAA
s caeSp111.Scaffold582    348421 12 +   484378 caataatctgaa
i caeSp111.Scaffold582  I 122 C 0
e caePb3.Scfld02_0       3501601 141 -  4147112 I
e caeJap4.Scaffold17990   182295 232 +   357190 I
e cb4.chrX              17581274 1033 - 21540570 I
e caeRem4.Crem_Contig15   330075 144 -  1794024 I

a score=165.000000
s ce10.chrX              2826643 7 + 17718866 TGAAAGA
s caeSp111.Scaffold582    348433 4 +   484378 ---taaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3501742 7 -  4147112 tgagaag
i caePb3.Scfld02_0      I 141 C 0
e caeJap4.Scaffold17990   182295 232 +   357190 I
e cb4.chrX              17581274 1033 - 21540570 I
e caeRem4.Crem_Contig15   330075 144 -  1794024 I

a score=544.000000
s ce10.chrX              2826650 4 + 17718866 ACCA
s caeRem4.Crem_Contig15   330219 4 -  1794024 ACTC
i caeRem4.Crem_Contig15 I 144 C 0
s caeSp111.Scaffold582    348437 2 +   484378 --tC
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3501749 2 -  4147112 --cc
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   182527 4 +   357190 ACTC
i caeJap4.Scaffold17990 I 232 C 0
e cb4.chrX              17581274 1033 - 21540570 I

a score=206629.000000
s ce10.chrX              2826654 322 + 17718866 ACCTGGATACGAAACTCTCTCGAATGTAAATCCTCAATCGTTTCCTTATACTTGCTTGAAAATTCATTATATAAGTAGCGACGAATAATATTAGTTTTTCCCACTTTCGCAGAACCCAGCACCACCAGACGGTACCGTTCTTCGCACATTTCG---------TCCTC---GGTTTTGGGCTGCAAGCATTTGAACATATTGACAGG------GAAGCACAC-AATATAAGATTTGA-------AAATGGATAGTT-------GGAATATTGG-GAAGAGAATC----GGAGTTTT---------------GGCAAT------AAATGTTCTTGGCCTTGTTTGCTATT-TTAATGGTTCATGTACCTTCTCCATAGCAATTT
s cb4.chrX              17582307 323 - 21540570 ACCTGGATGCGGAATTCTCTGGAGTGCAAATCCTCAATCGTCTCCTTGTACTTGTTGGAGAAGTCGTTGTACAAATAGCGTCGAACAATATTGGTCTTGCCCACTTTGGCGGATCCCAGTACCACGAGACGGTACCGTTCCTCGCACATCTCGGTGGGGGTTTCAGA---TGTTCTCGGCTGTAAGCAGTCAAACATG--GCCA-------CGGAATAC------------------------AAAGGATTAGTTTTCAGGGGGAAT------GAAATGGAGAGAATGAAAGTTTCAAGgatagaaagaagaagatgggagAAGGCTCT----------------TAT-TTCATGGTCCGCGTACGTTCTCCATAGTGATTT
i cb4.chrX              I 1033 C 0
s caeRem4.Crem_Contig15   330223 334 -  1794024 ACCTGGATGCGAAATTCTCTCGAATGCAAATCCTCGATGGTCTCCTTGTACTTGCTCGAAAACTCATTGTAGAGATACCGACGGATGATATTAGTCTTGCCAACTTTTGCAGATCCGAGTACCACCAGACGGTACCGTTCCTCGCACATTTCG---------TCTTC---GGTCTTCGGCTGGAAGCAGTTAAACATGATGCCAAG-----CGGACCACG--AATAGACAAATAAAGCAGGCAAAGGGGTTTGTT-------GGAATATttg-gaaatggagagaa-gGAAGTTT---------------gacaatgaatgaaaacgttttctttC----TGGCGTTT-TTTATGGTTCGCGTACCCTCTCCATAgcgattt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    348441 333 +   484378 ACCTGAATGCGGAATTCTCTCGAGTGCAAATCCTCAATCGTTTCCTTGTACTTGCTTGAGAACTCATTGTAAAGATAACGACGAATAATATTAGTTTTGCCAACTTTAGCAGAACCGAGTACCACCAAACGGTACCGTTCCTCGCACATTTCG---------TCTTC---GGTCTTCGGCTGGAAGCATTTAAACATGATGCCGAAGTAGAGGGACCACA--GATAGACAAATAAAGCC----AGAGGGTATGTt-------ggaatattttcgaaatggaGA----GGAAGTTT---------------GACAATGAAC-AAAACGTTTTTGCCT----TTGCCTTTCTTTATGGTCCGCGTACCCTCTCCATAGCAATTT
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3501753 326 -  4147112 ACCTGAATACGGAACTCTCGGGAGTGCAAATCTTCAATAGTTTCTTTGTATTTGCTGGAGAACTCATTGTACAAGTAGCGACGAATAATATTAGTTTTTCCGACTTTTGCGGATCCAAGTACCACCAGACGGTACCGTTCCTCGCACATTTCT---------TCTTCGGTGGTTTTCGGCTGCAAGCATTTAAACATGATGCCACA------GGACCACG--AATAGACAAATAAAGTC----GGAgggtttgtt-------gaaaaatttg-gaaatggagA----GGAAGTTT---------------GACAATGGA--AAGACGTTTTCTTC-----CTGCCTTT-TTTATGGTCCGGGGGCCCTCTCCATAGCGATTT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   182531 294 +   357190 ACCTGAATGCGAAACTCTCTTGAGTGCAAATCCTCTATGGTCTCTTTGTACTTGCTCGAAAACTCATTGTACAAATAACGCCGAATAATATTAGTCTTTCCAACTTTTGCCGAACCAAGGACTACCAGCCGGTACCGTTCTTCACACATATCT---------TCCTC---TGTTTTAGGCTGCAAACAACGGAACATGGTG-----------GGACCACACAAATGAACAAAAA---------GAAAGGCCGGAT-------GG---------GA------------GCGAGTTT---------------Gacaatgaa--aaaatgttt----------tagcCGTT-TCAAGGGATGGATGACCTTCTCCATGGCAATTT
i caeJap4.Scaffold17990 C 0 I 3793

a score=-2644.000000
s ce10.chrX              2826976 70 + 17718866 ---------ATGCCTGGTGGCT-AGGATATTAAG---TCATGAA--ACGAATTCTCCTTTCC-----------------AAATAAAATGAGAGACAATGTAA---
s cb4.chrX              17582630 45 - 21540570 GTCGATTTTATGAGAGGTTTCCAAGGAAACTGGGGCCCAATAGA--A----------------------------------------------------------
i cb4.chrX              C 0 I 54
s caeRem4.Crem_Contig15   330557 96 -  1794024 gagatttttatgaaTCGTGTCC-AGGATATTAGG---CAATAAA--ATGcattttcgtcttttctgtCATTCttttagatttcaaaatttgaaataatggGA---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    348774 75 +   484378 GGGG-GTTAATGGATGGTGTCC-AGGATATTAAg---caataaa--atgaattttcctcttttcttttcttcg------------------aaatgatGA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502079 91 -  4147112 CAAG-TTTAATGGACGGTGTCC-AGGATATTTAga--caataaaatataaaatatccttttttcttttcttttt----------gattgacGAATAATAAGGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=-7901.000000
s ce10.chrX              2827046 39 + 17718866 GATTTTAAGTGCTCGTATAAATACAAGTCGTTTGT---AATT
s caeRem4.Crem_Contig15   330653 33 -  1794024 GACAATTGAAGTTGACAGA-----AAGACTTTGGAGGA----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    348849  6 +   484378 -----------------------------CTCTAT-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502170  9 -  4147112 --------------------------GACTTGGAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17582675 54 - 21540570 I

a score=-377.000000
s ce10.chrX              2827085 288 + 17718866 -TAAAAC---TCTCAAAGTTTGAAAGTTAAGAGGGGGGGGGGGG---------------------GGGGTAGA--------------GAAAGGTTTTGAAT------GAATACAGAGATC-TAACTAGTGTTTGTAGGATCACTTGTTAATTTCATCCACGAGTCCTTCC---------GTTTAGTCCTTTTTTC------AAACTTTCAATTTCTGTTTACTGCAGTATGGAGGTAGGTTGGTATGGTGtta-------aatgtggagtagggccagtggggaaagtgttcaaaactacatcaatagtgccaaaa---tgacatatttataatTTTGAAAGTCGGTCAAAAAAAAACA
s cb4.chrX              17582729 275 - 21540570 -TAGAGCTCAATCAAAA--------CTTGAGAAGAGTGAATGAGGCATGAAATATATTGTCATCAAGGTTGAA---TAGACT-----GA------ATGAACATTC--AA--AAGAGCGTTCCCCCTAGAGAGTTT----CCACTTGTTAATTTAATCCGAAAGACCTTTCTCGTCAGCAGcacag-ccaatttttttcaaaaaactttcaatttccgTTTAACCCAG-----AGTCACATTGTTGGAGAGACAATCAAAAAAGGTAGAG-------------------------------------------AGAA---TGGGATATCCGT-TTTCCGAATCTACATCCTCAAAAAGTA
i cb4.chrX              I 54 I 8
s caeRem4.Crem_Contig15   330686 207 -  1794024 TCTGAGT---ATCCAAA--------TTCAAGGGAAAGGGATTAA-----------------ATCAAGGTTGGAAGTTTCACC-----G-------ATGAACATTC--AATGGTGAACGTT-CCCCTAGAGAGTTT-----CACTTGTTAATTCAATCTAGGAGTTCTTCC---------Gtttac-cttttttctttt---ctacttTCAATTTCCGTTTAGCAGAGTAAACGGTCACATTGTT----------------AACgt-----------------------------------------------aaaa---cagaaga-------------------------aaaaagca
i caeRem4.Crem_Contig15 C 0 I 40
s caeSp111.Scaffold582    348855 213 +   484378 -TAGAGC---TCTCGAAAT------CTC-AGAAGAACAAAGTCA-------------------TGTGTGTGCA---CTTACAGACAGGGAAAATcatgaacattttgaatcgAAAGTGTT-CCCCTAGAGTCTTT-----CACTTGTTAATTTAATCTAGATGCCCTTCC---------gtttactcatttttct------aaacgTCCAATTTCCGTTTAGTGAACTAAACTATCGCATTGTC----------------AACgt-----------------------------------------------aaaagagaagaaaa-------------------------aaaa----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502179 189 -  4147112 -TACATC---ATAAAAAAT------ATCGACTAGAATGAAATA-------------------------GTGAA---TTTACA-----GGGAAGTCATGAACATTC--GATTGTAAACGTT-CCCCTAGAGAGTTT-----CACTTGTTAATTTAATCTAGACAGActtct---------cttcaa-cttttttct------aaactttcaatttccgtttagCAA--------AGCACATTGTC----------------AACgt-----------------------------------------------aaaa---ccaagaa-------------------------aaaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=-8006.000000
s ce10.chrX              2827373 98 + 17718866 TGTactcctaattttgaaagtcggtcaaaaattaaattctgc-----gaatttcatactttacttttgttttaattatACATCAAGAAGTTCCAGTAGTCAAA
s cb4.chrX              17583012 35 - 21540570 -----------------------------GGATGGCTTATCCCGGAGGTGTGTC-----------------TAGACCTGTG----------------------
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold582    349068 43 +   484378 ---------agcacTGA-----GGT----GGACGGGATATCC-----GGTTTTC-----------------TGAACCTACATc--------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502368 44 -  4147112 ---------aacactga-----ggT---AGGATGGGACATCC-----GGGTTTC-----------------TGAACCAACATC--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e caeRem4.Crem_Contig15   330893 40 -  1794024 I

a score=-9828.000000
s ce10.chrX              2827471 301 + 17718866 ATTTTTTCAAAAAATTGGCAAATTGCCAAAAAATTGACTGGGAGTAAaaaaaatctctacaaaaaattctacaaaaaaAATTTCATTTTCAGACGGAACAAACCATTTTTTGCATTTCTATA-TCAATTTTTGTATGGAAAAAGTTTTTT-AAAAAGCGGCACAGCACTGGTGTAGACCTCTCTTTTTTTCCTATTTTTTGGTTTTTCTCACGCCTTATGTTTTTTCTTCCTGATCT-GGTAAACCTACAATTGTTGATGGAAGCGT---------------TGAAGTCATCGCGGTGCACAATAAGGACCAGAAGAAA
s cb4.chrX              17583047 120 - 21540570 ----------------------------------TGATCCGGGGtgca----------------------------------------ttttcagg-----------------atttccagGGGCGGTGGAtgta----------ttttc--------------------------------------------------tcattttctcacgCCGTTTG------------CATCC-A--AAACCTACTATTGTTGATGACGGCCCGTGTGAAGACgagaagaaa---------------------------------
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig15   330933 154 -  1794024 --ATCCTT-CCAAA-------------AAGAGCTTAGTCGAGGGTAGA----------------------------------------TCAAAGGG---------------GTGTGTCTAGACCTGTCTGATTTG----------TTTTCGGaggg-------------------------------------------ttttttttctcacgcCTTTTG-------TTTCTCATCC-GGTAAACCTACTATTGTTGATGATGGGCTAGCCGAAGAGGAGTGTGAA---------------------------------
i caeRem4.Crem_Contig15 I 40 I 20
s caeSp111.Scaffold582    349111 164 +   484378 -----ctc-aaaaa-------------agaagcttC-----GAATTGA----------------------------------------TCAGAGGG---------------GTGTGTCTAGACCCTATCCATATC----------TTTTA-GAGAA-------------------------------------------TGTATTCTCTCACGCCTTTTG-------TTCCTCTTCC-AGTAAACCTACAATTGTTGATGGAGAACT---CGACGCGGAATGTGAAGCCATTTTGGT---------GGTCCAGAAGA--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502412 163 -  4147112 -----CTCaaaaaa-------------aGGAGCTTAG-CTGGGCCAGA----------------------------------------TCAAAGGG---------------GTGTGTCTAGA-CCTGTCTATATC----------TTTTT-AGGGA-------------------------------------------T---TTTTCACACGCTTTTTG-------TTCCTCTTCCAAGTAAACCTACTATTGTTGATGGAGGACT---CGACGAGGAATGTGATGCCA---TGTT---------GGTCCGGAGTT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=2389.000000
s ce10.chrX              2827772 17 + 17718866 AGAAAAATACCGACGGA
s caeRem4.Crem_Contig15   331107 14 -  1794024 ---AAATTACTGATGGA
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    349275 15 +   484378 --CAAATCACAGAGTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502575 15 -  4147112 --AAAATTACTGACTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17583167 25 - 21540570 I

a score=155543.000000
s ce10.chrX              2827789 391 + 17718866  
s cb4.chrX              17583192 413 - 21540570  
i cb4.chrX              I 25 I 1671
s caeRem4.Crem_Contig15   331121 421 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    349290 429 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3502590 424 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=29467.000000
s ce10.chrX              2828180 245 + 17718866 CAAAAAAGCCTACAG--------TAAACTAGGCCCCA-----GAAAATAGTTGATAGT-T--AAGGAAGGA---------------ATTAACAAACGTGAGCAGTAAAAACCAAACATAATGAAACTGAGTGCCAA---TGGATGAGCAAGGTGCAGAGGCATTGTGTCTTTCTATGTGTGTGTGTGTGTGAATAACCAACCC---AGAAGCACTCTCTGGAAATTGATGCTCCG-------------TGAATAATAGGAAAACTACTATTCAAATATTTTCCCTGAATAATAGA
s caeRem4.Crem_Contig15   331542 246 -  1794024 ---AGTAATAGCCAAATACCCCGCAAAACAgtatcaaaaactgagaaaagcctattct-tcaaaaaaaaaagagaaaaaaagacggaGTATTATTG-TGAGCA------------------TAAAACGAG-GACAA---TGGATGCGCAGCTAGAAGATGCG-----------TAGGTACA---ATGTATAAATAACCAACCC---AAAAGCA--CTCTGGAAATTGATGCTTgcaaaaaggaagagaagaataaTGGGATAACTACTActcagaaatt---tctgaataatagA
i caeRem4.Crem_Contig15 C 0 I 339
s caeSp111.Scaffold582    349719 209 +   484378 ttcggtcAACTCCAG-------TCAGGACAGTATTTG-----GATAAAATTCTACGCtgtggaatgaaaaa---------------agca-------tGCGCA-------------------AAATAGAG-GACAA---AGGATGAGCAGCTAGATGATGCA-----------TAGGTGCC-GTGTGTATGAATAACC--------AAAAGca--ctctgaaaattgatgacTGC-------ATACAAAGAATAATAGGATAACTactattcaaattttgtctCTGAATAATGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3503014 224 -  4147112 ttaaATCCCTTCCAA--------CAGGACAGTATCAG-----GCAGAAACCCTACATT-TCGAAAGAAGAA---------------AGCACTATTCGTGAGCA-------------------AAAAAGAG-GACAAAAGAGGATGAGCAGATAGAAGATGCA-----------TAGGTGCA-GTGTGTATGAATAACCAACCCAGAAAGAGCA--CTCTGGAAATTGATGCTtgc-----gaaaaagaagaataatggGATAActactattcaaaattt---tgtgaagaatAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17583605 1671 - 21540570 I

a score=-6303.000000
s ce10.chrX              2828425 236 + 17718866 GTTGTACTAC---------GAAAAGAAGTCTTA--------TTGCAGTTCTCGTTATTTTGGAAATAAAAAAAACAATAGCCTCACTAAACAGTAAAAATGTTAAGAAAAGTTTGGT--TTCA------AAATCTGATAATTTGGAAAGTATATG-TATAAAAACGGGGAAATGTTAGAAT---AATTAAAGGAGAGAATTTTAAACGTGA-----AGAATTCTC----AAATGACCATCTAATGAAACT---TCTCAAAAATATTTGTTAAAGAAA--
s caeSp111.Scaffold582    349928 251 +   484378 GACGGAGTACTC----AATAGAGAGTCGTCTCATGAGTTTTACCGagttcttctcattttg-aatgaaata---------cTTTTGAAAGGGGttaaaatcttgaaaaagttcaagtggatca------gaataaaaatgaatgaggaacatttgaaatgacATGGTGAAATcacaaaaacggaaaatgagGAAGTGTGATTTGAAGGAttaagaaaacattttcttgatAACGAccatcaaagaaaaattaaacataaaaattc--------gagaaa
i caeSp111.Scaffold582  C 0 I 137
s caePb3.Scfld02_0       3503238 239 -  4147112 TGCGTACTACTCAATGAATGGAGGGACGTCTGA----TCTTTTCTGGTTCTTTTCATTTAGAAAAggaaga---------ttttttta---tttcaaaaggtTTCGAATATTGAAGAAGTTCAAGTGATGGAACAATACAAATGAGGAACCTTTG-CCtgacat--ttaaaaaattggaacggaATGTCGAGGGAAAAGATTT-ATGGttt-----gacattttc---agagagGGGATTGGAAGCCTTTAaatcttgaaaa-----------gaaaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17583605 1671 - 21540570 I
e caeRem4.Crem_Contig15   331788 339 -  1794024 I

a score=-3722.000000
s ce10.chrX              2828661 688 + 17718866  
s caePb3.Scfld02_0       3503477 765 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17583605 1671 - 21540570 I
e caeSp111.Scaffold582    350179 137 +   484378 I
e caeRem4.Crem_Contig15   331788 339 -  1794024 I

a score=-2307.000000
s ce10.chrX              2829349 4 + 17718866 ATT---A
s cb4.chrX              17585276 4 - 21540570 ACT--a-
i cb4.chrX              I 1671 C 0
s caePb3.Scfld02_0       3504242 4 -  4147112 -ttgt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e caeSp111.Scaffold582    350179 137 +   484378 I
e caeRem4.Crem_Contig15   331788 339 -  1794024 I

a score=72858.000000
s ce10.chrX              2829353 227 + 17718866 ACAAATCAAAAAAAAAAGCTTAAT--GAGAAGG---GAACTC--CTCTGCG--------CATTTTTTTTT---TGGTTCGAAGTCG-ACAAAAACTAGCAATGGATAGATTAG-GACTTGATGAGCATTGAAGCAAA-AAGAGCACTCTC-GCAGCAACAGAGCAAGCAATTCGTCCCCTGTTTGACACCATTAACTTGAAAATTGTTAGTA-GGAATCT-AGATG-AGATGACTTGATGGCATTGTTTTTt
s cb4.chrX              17585280 232 - 21540570 acaaaatg-caaaaaaaaaacaaagagagAAAAACCGAACTCTTCT-TccgtctttctttttttttttgaaagaggtCTGAAGCT--CGTGAGATGG-----GGACAGATTAGAGACTTGATGAGCATTGAAGCACGAAAAAGCATTTTCTGCCGAGCAGCACCAAACAGAGAG--CCCTGTTTGACACCATTAACTTTAAAATggttagtt---------gaaaaaaaaggacttGATAGCcttgtttgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   332127 221 -  1794024 ----------aagaagacaacaaa-----aaagacCGAACTC--CT-Tccg--------ctttttttgaaaagtggtCCAAAGCC--aaaaaaaCTGCCGATGGATAGATTAG-GACTTGATGAGCATTGAAGCAAG-AATAGCACTCTTCGCCACGACAGAGCAAGCATTTCG-ACCATGTTTGACACCATTAACTTGGTAATGGTTGGGTTGGAATCACAGAAATAGACGATTTGATaggtttgtttttt
i caeRem4.Crem_Contig15 I 339 I 99
s caeSp111.Scaffold582    350316 232 +   484378 acaaattg-aataaaaacaacaaa--gagGAAGAACGAACTC--CT-TCTg---ttcttcgtttttccaa-------CTAAAGCCGAGAAAAAACTGGCGATGGATAGATTAG-GACTTGATGAGCATTGAAGCAAG-AAGAGCACTCTCCGCCGCAACAGAGCAAGCAGTTCG-GCCCTGTTTGACACCATtaacttgaaaataattgggATGGAAGAT-GGAAACGACAAACTTGATagctttgtttttt
i caeSp111.Scaffold582  I 137 C 0
s caePb3.Scfld02_0       3504246 215 -  4147112 atggactgaaaaaaaaacaaagag--aaggACGACCGAACTC--CT-TCCG--------CATTTTTTAAACCGCGGTCTGGAGCCGACAAAAAACTGGCGATGGATAGATTAG-GACTTGATGAGCATTGAAGCAAG-AATAGCACTCTCTGTCGCAACAGAGCAA---------GTCTTGTTTGACACCATTAAT---------GGTCGGATGGGACAA-GGA---GGAAAACTTGATAgctttgtttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=-4195.000000
s ce10.chrX              2829580  7 + 17718866 -----taaa------gga---------
s cb4.chrX              17585512 12 - 21540570 tttctgaaa------gga---------
i cb4.chrX              C 0 I 219
s caeSp111.Scaffold582    350548  7 +   484378 ----ttaaa----------------ca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3504461 23 -  4147112 ----cgaaaaacgatgGATTTCTAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e caeRem4.Crem_Contig15   332348 99 -  1794024 I

a score=1085.000000
s ce10.chrX              2829587 7 + 17718866 ggggaca
s caeSp111.Scaffold582    350555 7 +   484378 ggAAACA
i caeSp111.Scaffold582  C 0 I 138
s caePb3.Scfld02_0       3504484 7 -  4147112 GGGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I
e caeRem4.Crem_Contig15   332348 99 -  1794024 I

a score=555.000000
s ce10.chrX              2829594 6 + 17718866 tagttt
s caePb3.Scfld02_0       3504491 6 -  4147112 TAGTTT
i caePb3.Scfld02_0      C 0 I 54
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I
e caeSp111.Scaffold582    350562 138 +   484378 I
e caeRem4.Crem_Contig15   332348 99 -  1794024 I

a score=0.000000
s ce10.chrX              2829600 637 + 17718866  
e caePb3.Scfld02_0       3504497  54 -  4147112 I
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I
e caeSp111.Scaffold582    350562 138 +   484378 I
e caeRem4.Crem_Contig15   332348  99 -  1794024 I

a score=91.000000
s ce10.chrX              2830237 1 + 17718866 A
s caePb3.Scfld02_0       3504551 1 -  4147112 A
i caePb3.Scfld02_0      I 54 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I
e caeSp111.Scaffold582    350562 138 +   484378 I
e caeRem4.Crem_Contig15   332348 99 -  1794024 I

a score=4880.000000
s ce10.chrX              2830238 45 + 17718866 GTCATTTTGCAATGAAATGTTTAATGCATTTTTTAGTGGACCGGG
s caeRem4.Crem_Contig15   332447 38 -  1794024 GTCATTTTGCAATG-------CAATGCATTTCTAAGTAAGAAAGA
i caeRem4.Crem_Contig15 I 99 C 0
s caePb3.Scfld02_0       3504552 38 -  4147112 GTCATTCGACAATG-------TAATGCATTTCAAAGCGGAAAAGA
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I
e caeSp111.Scaffold582    350562 138 +   484378 I

a score=20840.000000
s ce10.chrX              2830283 122 + 17718866 --------------AGACATGAAGTAATCCTGAACTTTTGTCTCTCTG----------TAGTC--GCAC-------CAAACTTTTTTGGGTGAACAAAAATGG------AGAGAAGCCGAG-TTGCGTTGCAAAAGATGCTCCAGCTTGCTCTAGTTGGGAT
s caeRem4.Crem_Contig15   332485 148 -  1794024 ACTCTACACAGTTTGGTCATAAAGTTGTTCTGAACTTTTGTCTCTCTATTC-------ATCTTGAGCACATCAGAAAGAGC-ATTTTAAGAAACACAAAATAGccggaaagagagaaaaaatggatggGGAGGAAGATGCTTCAG------TTTGGAAGGAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    350700 136 +   484378 --------------AGCCATAAACTGGCTTTGAACTTTTGTctctctattcaaaaa--acgtt--gCACATCGGAAAGAGCAATTTTGAGGAACACAAAATAGccggaaagagaaagaaga-agaggaaaaagaagatgctTCTG-------TTGGAAGGAT
i caeSp111.Scaffold582  I 138 C 0
s caePb3.Scfld02_0       3504612 139 -  4147112 --------------AGCCATAAACTTGCACTGGACTTTTGtctttctattcaaaaaagaagtt--gcaCATTTGAAAGAGCAATTTCAAGGAACACAGAATAggcaaagaaagaaaaaaaattggtgagaaaaaagatgctCCAT-------TTGGAAGGAT
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I
e cb4.chrX              17585524 219 - 21540570 I

a score=6311.000000
s ce10.chrX              2830405 13 + 17718866 GATAGAA----ATACGG
s cb4.chrX              17585743 17 - 21540570 GATAGGGGCTCGGACAC
i cb4.chrX              I 219 C 0
s caeRem4.Crem_Contig15   332633 13 -  1794024 GATAGGA----GGACAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    350836 13 +   484378 GATAGAA----GGAcac
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3504751 13 -  4147112 GATAGAA----GGacac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   182825 3793 +   357190 I

a score=47492.000000
s ce10.chrX              2830418 42 + 17718866 AAAATTGAAAGAGAATAGGAAATTACACACATTAAATAATCT
s cb4.chrX              17585760 42 - 21540570 GAAATTGAAAGAGAATAAGATATTATACCCATTAAATAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   332646 42 -  1794024 AAAATTGAATGAGAATTGGATATTACACCCATTAAATAATCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    350849 42 +   484378 aaaattgaaagagaattgGATATTACACCCATTAAGTAATCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3504764 42 -  4147112 aaaattgaaagagaattGAATATTACACCCATTAAATAATCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   186618 42 +   357190 AAGCTTGAAAGAGAATTAAAAATTACACCCATTAAATAATCT
i caeJap4.Scaffold17990 I 3793 I 1573

a score=4213.000000
s ce10.chrX              2830460 39 + 17718866 GCGGAAGTA-------------TACTTATAGA------GGCCTT--CCT-AGAATTATTAA
s cb4.chrX              17585802 52 - 21540570 TCGGAGGAAGACGGAATTTATATC--TATATC------TGCCTTT-CATAGgaattattaa
i cb4.chrX              C 0 I 1384
s caeRem4.Crem_Contig15   332688 32 -  1794024 TTGGGGGAA-----------------TGTATA------TGCTAT------GGAATTATAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    350891 45 +   484378 TCGggaata-------------ta--tatatatatatgtGCCTTCATAT-GAAATTATAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3504806 38 -  4147112 TCGGGAATA-------------TA--TATATC------TGCCTTT-CGT-GGAATTATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I

a score=31760.000000
s ce10.chrX              2830499 334 + 17718866 -CCTCAAT-ATTCGGAGCAGGGCAGCTGAATTTTTCTCTGTCATATTATATCATACTATCCAAAATTCTGGCAGTCTAAATTTAAGA-----CGTTGTTTTTTCAATTCTTCGTCTTTTTATTAAGCTTTTGTGGTGATGCCACGGATGTTG---------AGAAAATGAAGGGAATGAGAAAAGACATGCGTCAATACATATAGACCACAA-ATCCGTGGAAGAT----ACAAAATAAAAGCTCCTCGATATCACTAAAAGGTGATTTGATA-TTTGAAATCCTGGATTACGGAGCTCTGCTCAAT-GCATATTATTTTCTTTTTTTCTATATGATAAGTGTGTCACATGAGCTCT-----
s caeRem4.Crem_Contig15   332720 297 -  1794024 -CCTCCGT-AGTGGGAAGA-Tgcagaaa----tttcttt------ttttttcttactatTCTTGAATCCGCAGGCTT---Ttaaaat-----ctttgtttttttg---------cttcttgtTAGGCTTC--------TGCCACGGATGCTGATGCTGTcatgaaaggaaaaagaa--aaaggaaacctggggggataaatgaaaatgaaat-ttcagttggaCATCAACATGAAATAAAagcttctcaatttttctaaaaggTGATTTTGTC-CGCCAAATCCTGGATTACGAGCTT--------T-GCACTTTGTTTATCCAATATCAATATGATAAGAGA---------GCTCT-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    350936 294 +   484378 ACCTCTGCCAGTGGGAATT-CACA-----------------------TTCTCCGactatttttgaaccaaCAGAcctaaattgaaatttgtgttttgtCTTTTTG---------CTTCTTATTAGGCTTT--------CTATACGGATGCTGTCTTC----TGGAagggaaaaaaa--cgaaggaaaCTGG-----TAGACGAGAAtgagaa-ttcaaatataCATGAacataaaacaaaaacattgcAATATCTCTAAAAGGTGGTTTTGTCTAGTAGAATCCGGGATTACGGAGCT--------TAGCACTTTGCGTATTTGATATCAATATGATAAAAGG-------TATATCTGGTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3504844 287 -  4147112 CCTTCGTT--GTGGGAATA-TGAAGCGG-------------------ttttcctactatttctgaatttttgcattctattctaaat-----ctttgttttttca---------tttcttattagGCTTC--------TGCTACGGATGCGGTTCTCGTCTTATaagggaaa--------aaggaaactgG-----TGGAATGAAATGAGGATTTCAGTCAGACATCAACATGAAATAAAAGCTTCTCAATACCTCTAAAAGGTGATTTTGTCTCACGAAATCCTGGATTACGGGATT--------T-GCACTTTGCGCATTCAATATCAATATGATAAGAGT---------GATCCTGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I

a score=630.000000
s ce10.chrX              2830833 102 + 17718866 CATAAAAA-TGGATAGA-AATATTAAAACTACAAAACAAAAACTACAATTTCAAAAAATAGAATATTGAAA-TTTGTTTGATTTTTTGGAAATTACCAAGGGACG
s caeSp111.Scaffold582    351230  77 +   484378 CAAGACAA-CGGAGTGC-----TCAAAAC-ATCATTCAtagatttcattttataacatcaaaatat---aa-tttttatggTTTC-----------------ATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3505131  81 -  4147112 CAAGACAAGAGGAGAGCCAATATCAAAAC-ATCATCCACAAA-TTCATTTCATAGA--TGAAGTAT---AATTTTTTATGGTTTC-----------------AAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I
e caeRem4.Crem_Contig15   333017   0 -  1794024 C

a score=-14020.000000
s ce10.chrX              2830935 196 + 17718866 AGTAAGAAGACAGAATGGAATTATTGGAATATGCGCATGgtgtcccgtttctgttcgatctacgtagatctacgagaaatgcgagaatttagatgcagactactcaactgattttgcacgtgctgacgtcacattttttgagggaaaaattcccgcatttctgtagatcaaaacgcaatgggacaacctgacacca
s caeRem4.Crem_Contig15   333017  58 -  1794024 ----------------------------------------AGTC-------------------------------ACAAGACAACG---------------GCCGAGCTCACATTGAATACA-----TTTCTATATATT----------------------TCTGgattaa-------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    351307 122 +   484378 GAGAAGCAGGCAGAAGAGCAAAACAAGAGT----ATAAAAAGTC-------------------------------AGAATATGAAG----TGATGGCAGCTACCgtattcattttattattg-----GTTAGAGACTATAAACGAAGA-------------AATAGGTCGACAT---------CATCC--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3505212 129 -  4147112 AGAGAAAAGACGAAACAGAAGATTAAAAAT--GAAGACAAAGTC-------------------------------AGAATATGACG----CGATG---CCTACCGTaccctttttattttca-----gttagaTACAATAAAGGAAGA-------------TTTGGGTCAACAT---------CAACCTAAGCCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I

a score=-6269.000000
s ce10.chrX              2831131 125 + 17718866 cttgAGTGTGAGaaaaaaattc-aaaa-aaagaattcaaaatttcatatggttttttgaaaatttga-------aaaatctcACAATCAGTATTGCCACTTTTTTAGAAGTCGTCGATCCAAAAAAAGTTATTT--------
s caeRem4.Crem_Contig15   333075  93 -  1794024 ------------aagaaaatat-acaa-aatgAA-----------------------AGCAATCTAGTGATGTCAAAATGTCACTACcgtaatttcttttctttt---agtCAGAGA-CTATGAAAGATGATTT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    351429  56 +   484378 TTT---------AAGAGCTTATGACGACaacgaa-----------------------aaatatttgg------------------------------------------------------ggaaagatgaattgaaaaagc
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3505341   0 -  4147112 C
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I

a score=90708.000000
s ce10.chrX              2831256 552 + 17718866  
s caeRem4.Crem_Contig15   333168 484 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 276
s caeSp111.Scaffold582    351485 399 +   484378  
i caeSp111.Scaffold582  C 0 I 78
s caePb3.Scfld02_0       3505341 440 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I

a score=119.000000
s ce10.chrX              2831808 5 + 17718866 TTTCT
s caePb3.Scfld02_0       3505781 5 -  4147112 atttt
i caePb3.Scfld02_0      C 0 I 251
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I
e caeSp111.Scaffold582    351884 78 +   484378 I
e caeRem4.Crem_Contig15   333652 276 -  1794024 I

a score=0.000000
s ce10.chrX              2831813 2374 + 17718866  
e caePb3.Scfld02_0       3505786  251 -  4147112 I
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I
e caeSp111.Scaffold582    351884   78 +   484378 I
e caeRem4.Crem_Contig15   333652  276 -  1794024 I

a score=316.000000
s ce10.chrX              2834187 128 + 17718866 CATTTCACTAGGTCGGAAGGGTACAAATAATCACCTTTCA----TTTTATTACTTTAGAAACAAAA--ACTGTTTAAAATTAGGAAGACAAAGCATT----------------------GCATAATCTAGAAACAAAATGCAGTAAGCATAG---------AATA
s caeSp111.Scaffold582    351962 164 +   484378 CGTTTGACTTGTCTGGGGGACTTGAAAAGgatatttttcaccgatttgtttatttccaaaataaaacaacAGGTTAGCAGAAGAGAAGCAATGTGTTATAATGAGAATATCAACCGCAAGAAAAATCTAGATccgaaatacaa-aaaaacagctactttcagaaa
i caeSp111.Scaffold582  I 78 C 0
e caePb3.Scfld02_0       3505786 251 -  4147112 I
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e cb4.chrX              17585854 1384 - 21540570 I
e caeRem4.Crem_Contig15   333652 276 -  1794024 I

a score=211.000000
s ce10.chrX              2834315 14 + 17718866 TCAAGAAAAAATCC-
s cb4.chrX              17587238 14 - 21540570 TCaacaaaaaggga-
i cb4.chrX              I 1384 C 0
s caeSp111.Scaffold582    352126 14 +   484378 -taaaaaaaagctag
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3505786 251 -  4147112 I
e caeJap4.Scaffold17990   186660 1573 +   357190 I
e caeRem4.Crem_Contig15   333652 276 -  1794024 I

a score=61420.000000
s ce10.chrX              2834329 149 + 17718866 GGAATGAATTGAAAAAA--------TTCAGTGAATGAAGAATAATGATGTTACACACGTTCGGT--GGAGTCGGTCTTCAAAAGAGAACAAGTTCAAAAATAAGGCTCGTGAA-----TGAAGTGGTTGGAAAAAATAATAGGGTCGGGGGGTGAACAACGAAT
s cb4.chrX              17587252 151 - 21540570 aaaaggaatgaaaagcattttttttttcagtgaatgaAGTTTAATGATGTTACACACGTTCGGTGGGGAGTTGGTCTTCAAAAGAGaacaagttcaaaaataagGCTCGTGGT-----CGg---gtgaggaagaaga-----aaaagagtgtATAGAATTGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   333928 142 -  1794024 ggaatgaattgaaaaaa--------ttcagtgaaTGAAGTATAATGATGTTACACACGTTT-----GTGTTCGGTCTTCAAAAGAGAACAAGTTC-AAAATAAGGCTTTTGGTGGAAAGGG---GGGAGGAAGAGGT-----GAATAGCAGAAAAAAGGCGAGT
i caeRem4.Crem_Contig15 I 276 C 0
s caeSp111.Scaffold582    352140 132 +   484378 ggaatgaattg-aaaaa--------ttcagtgaGTGAAGTTTAATGATGTTACACACGTTC-----GTGGTCGGTCTTCAAAAGAGaacaagttcaaaaataaggCTCGAGTT-----TGG---GGtcggaagaa--------aacgaatgtgaagaga--aat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506037 133 -  4147112 ggaatgaattgaaaaaa--------ttcagtgaaTGAAGTATAATGATGTTACACACGTTC-----GTGGTCGGTCTTCAAAAGAgaacaagttcaaaaataaggCTCAGGTT-----TGGA--AGTGGggagaa-----------gaatagaaaaaaacgaat
i caePb3.Scfld02_0      I 251 C 0
e caeJap4.Scaffold17990   186660 1573 +   357190 I

a score=170072.000000
s ce10.chrX              2834478 297 + 17718866 TGAATAGAATTCATGAGGGAAGAAGAAGAAGGGTAAATTATGTGAGTTAAAGC----AGGCC----------GATTTG--AATAAAAACGAGTCAAAAA------CCAAGTTGTTTAA---GC------------TATGGAAAAAT------------GCGCCTA-----------------GTTCAAAAAATTTAAGCAGTGTGTTCGACAAATGCCGGTGCAGGAGTGACAACATCCTGGTGTGGTGGCTCGGTTGAAATGTCTCCAGCGTTCGAAGAAGCGTCGCTACCTGACTTGGTACGTTCACGCTTCGTTGCCTGAAACATG-------------TCACATATTTGCATGAATAGCAATAGTTTTTGCA
s cb4.chrX              17587403 317 - 21540570 TGAATAGAATTCATGGAGGAAG--GAAGAAGGGTACATTATGTGAGTTAAAGCGCAGGAGTC----------AATTCG-AAAttagacatga--aaaaa------tagcgttggaaga---aaaaaaaagcagtgGGAAAACAAGT----------GGGCGCCTATATAAGCTAACTAATAGGTCCAATGAGTTTAAGCGGTGTGCTCGACAAATGCAGGAGCTGGAGTGACAACATCTTGGT---GTGGCTCCACATGAACATCGCCAGCGTTCGACGATTCGTCGCTGCCCGACTTGGTGCGTTCACGCTTCGGCGCCTGAAACAACATTGCATTCCAAATTA-GTTTCTGCA---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   334070 270 -  1794024 TGAATAGAATTCAT----GAAG--GAAGAAGGGTACATTATGTGAGTTAAAGC----AAGtc----------aatttg-aaattagaaaaaa--aggaa------aaaagctgggagt---gaa-----------gagagaaaagt-----------ggcGCCTA-----------------GTTCAACGAGTTTAAGCGGTGTGATCGACGAATGCTGGTGCTGGAGTGACAACGTCCTGGTGTAGTGGCTCCGCAGATATGTCGCCAGCGTTCGAAGATTCGTCGCTGCCCGACTTGGTACGTTCACGCTTCGTCGCCTGAAACACC-------------TCA-ATTATTGAA---------------------
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    352272 280 +   484378 tgaatagaaTTCAT----GAAG--GAAGAAGGGTACATTATGTGAGTTAAAGC----AGGCA----------AATTTG--aattagaaaaga--aagaagaaaaagaaagctgtgaatgaagaatgaag------agaaaaaaaac-----------ggcgCCTA-----------------GTTCAATGAGTTTAAGCGGTGTGATCGACAAATGCTGGTGCAGGAGTGACAACGTCTTGGT---GCGGCTCCACGGAAATGTCGTCGGCGTTCGAAGATTCATCGCTGCCCGACTTGGTACGTTCACGCTTCGTCGCCTGAAATACC-------------TAG-ATATTTGCA---------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506170 270 -  4147112 tgaataGAATTCAT----GAAG--GAAGAAGGGTACATTATGTGAGTTAAAGC----AAGTC----------Aattag--aattagaaaaaa--aagaa-------aaagctgtgaat---gaatgaaa------aaagcaaaaac-----------ggCGCCTA-----------------GTTCAACGAGTTTAAGCGGTGTGATCGACGAATGCCGGTGCCGGAGTGACAACGTCTTGGT---GTGGCTCCACAGAAATGTCTCCAGCGTTCGAAGATTCATCGCTGCCCGACTTGTTGCGTTCACGCTTCGGCGCCTGAAACACC-------------TCA-ATATTTGCA---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   188233 276 +   357190 TGAATAGTGCTCAT-----------AACAAGGGTACATTATGGGAGTTAAAgc----aagaagacgaagaagaattTGAAAACGAAAGCGGA--TAAAA------GTGGGTggaggag---gaggggag------gaggaagaaatcaaaaatatgTAGCGCCTA-----------------GC----GGAATTTATGCATTATTCTCTACAAAAGCCGGCGAAGCCGTAATCACATCCTGATGCAGTTGTTCCGGAGTAAGATCGTCAGCATTGGACGAGTCGTCACTGCCCGACTTTGTGCGTTCACGCTTCGCCGCCTGAAACATG-----------------------------------------------
i caeJap4.Scaffold17990 I 1573 C 0

a score=-18182.000000
s ce10.chrX              2834775 141 + 17718866 CCATGTGGAAATCTAAGAATCTATGAagccagggcttccattccgccacagaaccccgaaagtgtcggccgctgccaaataac-tatttatcgcactacgttatgcaaac---atcaagcatggcgtggagcgccgTCACCGTCA-
s caeRem4.Crem_Contig15   334342  24 -  1794024 --------------------------------------------------------------------------CGATAACAA-GTTTG--------------TGCAAAGTTA---------------------------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    352552  23 +   484378 ------------------------------------------------------------------------TACTGAATTAC-TTTTT--------------TGTGAAC------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506440  23 -  4147112 ------------------------------------------------------------------------TGCCAAACTAT-TTTTC--------------TGCAAAC------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   188509  20 +   357190 -----------------------------------------------------------------------------AACAACGTCTTC--------------TGCAAAC-----------------------------------G
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17587720   0 - 21540570 C

a score=291808.000000
s ce10.chrX              2834916 315 + 17718866 AAATCCTAGCCAGCAGTTGTAGAAAATACACCA-----ACCTCTCCATCGCTGCTGCTGCTGTTAGTTTGATCTTCGTCCTCTTCCTCCTCGTGGCAGAACGTTTCCTGATCGTTCAACGTTTTCTTGTTCCATCCACGAACTTGCTGTCCGACACTTTGTTGGCGTTCCAGAGTGTTTGATCGAGATCTCAAAGTGTGTGCGTGGTCGACTGTAAGCTCATGTGGCATGCATTTCATTGGTGCACGGAAATAGTAGAATGATGGATAGTGTACAAGGTTGTAGCAAGAAGAAGCGTAGACGTCAGCATATCTGAAAATA
s cb4.chrX              17587720 295 - 21540570 AAATCC--------------------TCCTCTC-----ACCTCTCCATCACTGCTGCTGCTATTTGTTTGATcctcatcctcttcttcttcatgaCAGAACGTCTCCTGGTCGTTCAACGTCTTCTTGTTCCATCCGCGAACCTGTTGTCCCACACTTTGTTGACGTTCCAGGGTGTTGGATCTGGATCTCAGGGTGGAGGCATGGTCCACAGTCAACTCGTGAGGCATGCACTTCATTGGAGCGCGGAAATAGTAGAACGATGGGTAGTGGACCAGATTGTAACAGGAGGATGCGTAGACGTCAGcgtatctgaaaata
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   334366 287 -  1794024 -AA---------------------------CAG-----ACCTCTCCATCACTGCTGCTGCTGTTTGTTTgatcctcatcttcttcttcttcatgaCAGAAGGTTTCTTGATCGTTCAACGTTTTCTTGTTCCATCCACGAACTTGTTGACCAACACTTTGTTGACGTTCCAAGGTGTTAGATCTGGATCTCAAAGTGGATGCATGGTCGACGGTGAGCTCGTGTGGCATACACTTCATTGGTGCACGGAAATAGTAGAACGATGGATAGTGTACCAAGTTGTAACAGGACGAGGCATAGACGTCagcatatctgaaaata
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    352575 284 +   484378 -------------------------------TG-----ACCTCTCCGTCACTGCTACTGCTGTTCGTTTGctcctcatcttcttcttcttcgtgaCAGAATGTCTCTTGATCGTTCAACGTCTTCTTATTCCATCCACGGACTTGTTGTCCAACACTTTGTTGACGCTCCAAAGTGTTCGATCGTGATCTAAGAGTGGAAGCGTGGTCAACGGTAAGCTCGTGGGGCATGCATTTCATTGGGGCACGGAAATAGTAGAAAGATGGGTAATGCACCAGATTGTAGCATGAAGATGCGTAGACGTCAGCATATCTAAAAATA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506463 289 -  4147112 -------------------------------TAAAACTACCTCTCCGTCACTGCTGCTGCTGTTCGTTTGAtcctcatcttcctcttcttcgtgGCAGAATGTTTCCTGATCGTTCAATGTCTTCTTGTTCCATCCACGAACTTGTTGTCCAACACTTTGTTGACGTTCCAAAGTGTTTGATCGAGATCTTAGAGTGGAAGCATGATCGACAGTCAGCTCGTGTGGCATGCACTTCATTGGGGCGCGGAAGTAGTAGAACGATGGGTAGTGGACCAGGTTGTAGCATGAAGATGCGTAAACGTCagcatatctgaaaata
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   188529 292 +   357190 -----------------------AAATCAACCA-----ACCTCTCCGTCACTGCTGCTGCTTCCAGTGTTCTCCtcatcctcctcctcttcGTGGCAGAACGTCTCCTGATCGTTCAACGTCTTCTTGTTCCATCCGCGCACTTGTTGTCCCACACTTTCCTGTCGGTCTAGCGTGTTGGAGCGAGATCTCAGCGTGGAGGCGTGATCAACTGTAGCCTCGTGTGGCATGCACTTCATTGGAGCGCGGAAATAGTAGAATGATGGGTAGTGCACAAGGTTGTAGCATGAAGAAGCGTAGACATCAGCGTATCTAGAGTTG
i caeJap4.Scaffold17990 C 0 C 0

a score=-2166.000000
s ce10.chrX              2835231 1 + 17718866 -C
s caeRem4.Crem_Contig15   334653 1 -  1794024 -g
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    352859 1 +   484378 -A
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506752 1 -  4147112 -g
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   188821 1 +   357190 C-
i caeJap4.Scaffold17990 C 0 I 31
e cb4.chrX              17588015 22 - 21540570 I

a score=1538.000000
s ce10.chrX              2835232 9 + 17718866 CCGTGGTCT
s caeRem4.Crem_Contig15   334654 9 -  1794024 ttctGGTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    352860 9 +   484378 GGTTGATCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506753 9 -  4147112 ctTTGGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   188822 31 +   357190 I
e cb4.chrX              17588015 22 - 21540570 I

a score=190.000000
s ce10.chrX              2835241 8 + 17718866 TTGCACTT-
s cb4.chrX              17588037 4 - 21540570 -----TTAT
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig15   334663 9 -  1794024 TTGCGCTAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    352869 8 +   484378 TTGCACTT-
i caeSp111.Scaffold582  C 0 I 93
s caePb3.Scfld02_0       3506762 8 -  4147112 TTGCACTT-
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990   188822 31 +   357190 I

a score=3501.000000
s ce10.chrX              2835249 31 + 17718866 ATTTCTATTTTTGGGTA----GGTTCAGTCAACCG
s cb4.chrX              17588041 35 - 21540570 ATTCATGTATGTTTCTAAGCGAATTCAATGAACCG
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   334672 31 -  1794024 TTTCCTAATTATGGCTA----GATTCAGTGAACCG
i caeRem4.Crem_Contig15 C 0 I 148
s caePb3.Scfld02_0       3506771 31 -  4147112 ATCTCAAATTCTAGTTA----AAATCAGCGTTCCg
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17990   188822 31 +   357190 I
e caeSp111.Scaffold582    352877 93 +   484378 I

a score=613.000000
s ce10.chrX              2835280 4 + 17718866 TGAT
s cb4.chrX              17588081 4 - 21540570 TGAT
i cb4.chrX              I 5 C 0
s caePb3.Scfld02_0       3506802 4 -  4147112 tagt
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold17990   188822 31 +   357190 I
e caeSp111.Scaffold582    352877 93 +   484378 I
e caeRem4.Crem_Contig15   334703 148 -  1794024 I

a score=244.000000
s ce10.chrX              2835284 23 + 17718866 GTCCTAAAAATGTCATCAAACCG
s cb4.chrX              17588085 21 - 21540570 ATC--ACTGATATCATTAATTCG
i cb4.chrX              C 0 I 36
e caePb3.Scfld02_0       3506806 115 -  4147112 I
e caeJap4.Scaffold17990   188822 31 +   357190 I
e caeSp111.Scaffold582    352877 93 +   484378 I
e caeRem4.Crem_Contig15   334703 148 -  1794024 I

a score=0.000000
s ce10.chrX              2835307 709 + 17718866  
e caePb3.Scfld02_0       3506806 115 -  4147112 I
e caeJap4.Scaffold17990   188822  31 +   357190 I
e cb4.chrX              17588106  36 - 21540570 I
e caeSp111.Scaffold582    352877  93 +   484378 I
e caeRem4.Crem_Contig15   334703 148 -  1794024 I

a score=142.000000
s ce10.chrX              2836016 11 + 17718866 ATCAAGTTATA
s caeSp111.Scaffold582    352970 11 +   484378 ATCCAATTCCT
i caeSp111.Scaffold582  I 93 C 0
e caePb3.Scfld02_0       3506806 115 -  4147112 I
e caeJap4.Scaffold17990   188822 31 +   357190 I
e cb4.chrX              17588106 36 - 21540570 I
e caeRem4.Crem_Contig15   334703 148 -  1794024 I

a score=29.000000
s ce10.chrX              2836027 1 + 17718866 T
s caeSp111.Scaffold582    352981 1 +   484378 C
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506921 1 -  4147112 T
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold17990   188822 31 +   357190 I
e cb4.chrX              17588106 36 - 21540570 I
e caeRem4.Crem_Contig15   334703 148 -  1794024 I

a score=717339.000000
s ce10.chrX              2836028 766 + 17718866  
s cb4.chrX              17588142 772 - 21540570  
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig15   334851 788 -  1794024  
i caeRem4.Crem_Contig15 I 148 C 0
s caeSp111.Scaffold582    352982 784 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3506922 790 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   188853 767 +   357190  
i caeJap4.Scaffold17990 I 31 I 757

a score=-1541.000000
s ce10.chrX              2836794 43 + 17718866 AATCTCATCTATTTAGTTTCCGGAAACAA----GACATTTGAGTCTC
s caeRem4.Crem_Contig15   335639 43 -  1794024 CGT-TCTCTAGTTTAATCCCATGAGAGTGGTTT---GTATCAATCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    353766 45 +   484378 aag--ttcaaatgtAATCCCATGAGAGTGCTTTGATATTTCCTCCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3507712 44 -  4147112 ACG-TTTCAAATGTAATCCCCTTGAGATA--TTCAAGATTCAGTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   189620 757 +   357190 I
e cb4.chrX              17588914  0 - 21540570 C

a score=113438.000000
s ce10.chrX              2836837 127 + 17718866 ACCTCCACATGAACCCAGTCAATAACTCGTCTCAAATCTTGGAAAATTGATTTGTATGACATCATCACCTCGCCACCTTTCACTCCCGTCTTATCAGTGAGCCTGGAA---TTTATTGGAA---AATGTTGCA
s cb4.chrX              17588914 122 - 21540570 --CTCCACATGAACCCAGTCAATGACTCTTCTCAAATCTTGGAAGATGGACTTGTATGACATCATCACTTCGCCACCCTTCACTCCGGTCTTATCAGTGAGcctggaa---ttttccaatttt------tgca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   335682 130 -  1794024 ACCTCAACATGCACCCAGTCAATGACTCTTCTCAAATCTTGGAAGATCGACTTGTATGACATCATCACCTCGCCACCCTTCACTCCGGTCTTATCAGTGAGTCTGGAA---TTTAAAGGTGTTGAATGCTGCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    353811 126 +   484378 ACCTCAATGTGAACCCAGTCAATGACTCTTCTCAAATCCTGGAAAATGGACTTATATGACATCATCACCTCGCCGCCTTTCAGTCCGGTCTTATCAGGAAGCCtggaa----tttcggaaattaAT---TGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3507756 119 -  4147112 ACCTCAACATGCACCCAGTCAATAACTCTTCTCAAATCTTGGAAGATGGACTTGTATGACATCATCACCTCTCCACCTTTCACTCCAGTCTTATCAGTTAgtctggaa---ttttcgggaa-----------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   190377 117 +   357190 ACCTCAACATGGACCCAATCAATGACTCTTCTCAGATCCTGGAAAATCGATTTGTATGACATCATCACCTCACCAGCCTTCACTCCCGTCTTATCAGCTAGCCTGgaaaatgtttca----------------
i caeJap4.Scaffold17990 I 757 I 33

a score=-4499.000000
s ce10.chrX              2836964 22 + 17718866 -GT--------------------GGAGCTGCCTATCTTGTAAA
s cb4.chrX              17589036 18 - 21540570 -gttctcCC------------------------GTCGCGCTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   335812 42 -  1794024 -GCCTCTCCAAAACGTTTCGGAAACAGATAGCTGTCTCGAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    353937 43 +   484378 TGCTCCTTCTAATAgttatcagaaaatgagtCTGTCCTGCAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3507875 40 -  4147112 tgTTGCAACGGAAATTGTTC---AAAGGAAGCTGTCTTCGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   190494 33 +   357190 I

a score=224110.000000
s ce10.chrX              2836986 338 + 17718866 CTT-----ACATCGAATAATGTGGATGCTTGTCAAAGAAGTCGATAAGTTGACAGATAAGATGAGTCTCGGGCATGTTGAACAGCGTGTTCAATACATAAACCCGCGAGTCGGACAATGGTAGGTACTTGTTCGGGTACATCTCCTCGATTTCATGGCTGCAAAATTAATT-------------TTTGCTTGATTATATTGATT-----ATTTAGGCATACTTTTTCAAGAAACGGAGACCGTGAATTCCTCCGAGAATGTTTCCAAATCCATCAACTTTGAGCAAATTTCCGAATTGAAACTCGAACCACAGACCTGAAATAATCAAGCACACTATAATAATCTTTTCTTGCGACTGATT
s cb4.chrX              17589054 334 - 21540570 CTTCACTTACTGCGAATAGTTATCGTGCTTGTCGAAGAAGTCAATAAGCTGACAGATAAGATGCGTTTCTGGCATGTTGAACAACGTGTTCAGCACATAGACACGGGAGTCGGAGAGTGGAAGGTACTTGTTCGGGTACATCTCCTCGATTTCATGGCTG--AAAGTGggt-------------ttttgataattctgTGAACTTATAAGT-----CATACTTCTTCAAGAAACGCAGCCCATGAATTCCACCAAGAATATTTCCAAatccatcaactttgagcaagTTACCATATTGGAATTCAAACCAGAGAcctgagaaaaaattg------ggaatagTAtttttttAAGAC-GATT
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig15   335854 314 -  1794024 CTTCACTTACTGGGCATAATTGTCCTGCTTGTCGAAGAAGTCGATGAGTTGACAGATAAGATGGGTCTCCGGCATGTTGAATAATGTGTTCAAGACATAGACACGAGAGTCAGACAGAGGAAGGTACTTGTTTGGATACATCTCCTCAATTTCATGGctg--aaatgaaacaacatttat---atttctttttttttgagagct-----GT-----TTTACTTCTTCAAGAAACGAAGCCCGTGAATTCCTCCAAGAATGTTTCCGAATCCATCGACCTTGAGCAAGTTCCCGTATTGGAATTCAAACCAGagacctgaaaa---------------aatgata-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    353980 313 +   484378 CTTCACTCACGGAGAGTAATTGTCGTGTTTGTCAAAGAAGTCAATGAGTTGACAGATTAGATGTGTCTCCGGCATGTTGAACAACGTGTTCAAGACGTAGACACGTGAATCCGACAATGGAAGATACTTGTTGGGATacatttcttcgatttcatgACTG--AAAATAG-GAGACTATAC------TATCAGATTACCAGAGAT-----CT----ACGTACTTTTTCAAGAAACGAAGTCCGTGAATTCCTCCAAGAATGTTTCCGAACCCATCGACTTTGAGCAAGTTGCCATATTGAAACTCGAACCAGAGAcctggagaaaa------------gaaatt------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3507915 314 -  4147112 CTTCACTTACTGGGAGTAATTATCGTGCTTGTCGAAGAAGTCAATGAGTTGACAGATAAGATGGGTTTCTGGCATGTTGAAAAGCGTGTTCAAAACATAGACGCGAGAGTCGGAGAGTGGAAGATACTTATTTGGATACATCTCCTCAATTTCATGgcta--aaaatagagaaaaagtaca-aattgAGCTAATTATTA----------TT----GCATACTTCTTCAAGAACCGAAGTCCATGAATTCCTCCAAGAATATTACCGAATCCATCAACCTTGAGCAAGTTTCCATATTGGAACTCGAACCATAGacctgaaaacga------------aaaact------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   190527 323 +   357190 -----CTCACGCCGAGTAGTCGGGATGCTTGTCAAAAAAGTCAATGAGATGGCAGATGAGATGCGTCTCGGGAAGGTTGAACAACGTGTTCAGCACGTAGATTCTAGAGTCTGACAGTGGTAGATACTTGTTCGGGTACATTTCTTCAATGTCATGGCTG--AAATTAAGGCATTAAAATCTGGTTTTCCACATcaaaatgtat-----gt----atgtactttTTAAGGAAGCGAAGTCCGTGAATTCCTCCAAGAATGTTTCCAAATCCGTCAACCTTGAGAAGATTTCCATATTGAAACTCGAACCAGAGAcctagaaaaagaaaatgaa----aatatt------------------
i caeJap4.Scaffold17990 I 33 C 0

a score=583.000000
s ce10.chrX              2837324 13 + 17718866 AAATATTTAAAGA
s caeRem4.Crem_Contig15   336168 13 -  1794024 tgaAATTTTAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    354293 13 +   484378 atcaattttgcGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508229 13 -  4147112 gaaacacttAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   190850 13 +   357190 aaGTATCAGAAGA
i caeJap4.Scaffold17990 C 0 I 25
e cb4.chrX              17589388 42 - 21540570 I

a score=-1872.000000
s ce10.chrX              2837337 31 + 17718866 CGATTACGCATTGAATCGTAAT-----------CAGAAACCC
s caeRem4.Crem_Contig15   336181 21 -  1794024 CGATTA------------TAATATCTTCAACTT---------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    354306 10 +   484378 CGATTA------------TCAT--------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508242 10 -  4147112 CGATTA------------TTAT--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   190863 25 +   357190 I
e cb4.chrX              17589388 42 - 21540570 I

a score=-590.000000
s ce10.chrX              2837368 1 + 17718866 A
s cb4.chrX              17589430 1 - 21540570 C
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig15   336202 1 -  1794024 C
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    354316 1 +   484378 G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508252 1 -  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   190863 25 +   357190 I

a score=169650.000000
s ce10.chrX              2837369 616 + 17718866  
s cb4.chrX              17589431 650 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   336203 647 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    354317 624 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508253 649 -  4147112  
i caePb3.Scfld02_0      C 0 I 93
s caeJap4.Scaffold17990   190888 618 +   357190  
i caeJap4.Scaffold17990 I 25 C 0

a score=-2772.000000
s ce10.chrX              2837985 12 + 17718866 TAACACA---GATTT-
s cb4.chrX              17590081  5 - 21540570 ----------gaatt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   336850  5 -  1794024 ----------GAAtt-
i caeRem4.Crem_Contig15 C 0 I 66
s caeSp111.Scaffold582    354941 14 +   484378 -aaaaaatgaatatt-
i caeSp111.Scaffold582  C 0 I 8
s caeJap4.Scaffold17990   191506 13 +   357190 CAAGGTg---aaattt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3508902 93 -  4147112 I

a score=397.000000
s ce10.chrX              2837997 13 + 17718866 GATATAAATTTCT
s cb4.chrX              17590086 11 - 21540570 --ttcagaaattt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    354963 12 +   484378 -GAATAGATTTTT
i caeSp111.Scaffold582  I 8 C 0
s caeJap4.Scaffold17990   191519 13 +   357190 caaccaaattccT
i caeJap4.Scaffold17990 C 0 I 62
e caePb3.Scfld02_0       3508902 93 -  4147112 I
e caeRem4.Crem_Contig15   336855 66 -  1794024 I

a score=873.000000
s ce10.chrX              2838010 3 + 17718866 CAG
s cb4.chrX              17590097 3 - 21540570 cag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    354975 3 +   484378 CAG
i caeSp111.Scaffold582  C 0 I 35
e caePb3.Scfld02_0       3508902 93 -  4147112 I
e caeJap4.Scaffold17990   191532 62 +   357190 I
e caeRem4.Crem_Contig15   336855 66 -  1794024 I

a score=556.000000
s ce10.chrX              2838013 37 + 17718866 AAATAA----AATATTTTGAATGGCGTTCTTATTTTCTAAA
s cb4.chrX              17590100 41 - 21540570 acatagTATTAATTTTCTAATTGCTGTCAGCATGTTCTAGA
i cb4.chrX              C 0 I 1668
e caePb3.Scfld02_0       3508902 93 -  4147112 I
e caeJap4.Scaffold17990   191532 62 +   357190 I
e caeSp111.Scaffold582    354978 35 +   484378 I
e caeRem4.Crem_Contig15   336855 66 -  1794024 I

a score=0.000000
s ce10.chrX              2838050 457 + 17718866 CTATGTTTATGCAAAAAGCTACATCACAGGTttgaaggaggtattacggatttgcgtattttaaacgtgtaggctcaaaatgtgtttaagtgaacgaatttcgtaatgacatctttcaaaaaaaatttcacaaacatttcatggcggttcaaaatttcgaaaaatttagcctaattctagctgaaatctgcaattttGGGACCAAAAATTACAAAACACCTAtggtcacctataggctttaaatgtgccatcaacgcagtaacgcgagataaactaccaaaatatgagataaaggataaaaatttgaaaaaaaagtcatcttcgaacggctgcgacagagtgactaaattcggagatattacctaattctgaacccccataaaaaaatttttgaaatattttttgaaatgtttcattttgaaattcatttatttgaacacattttgggctacatacc
e caePb3.Scfld02_0       3508902  93 -  4147112 I
e caeJap4.Scaffold17990   191532  62 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I
e caeSp111.Scaffold582    354978  35 +   484378 I
e caeRem4.Crem_Contig15   336855  66 -  1794024 I

a score=191.000000
s ce10.chrX              2838507 2 + 17718866 ca
s caeRem4.Crem_Contig15   336921 2 -  1794024 CA
i caeRem4.Crem_Contig15 I 66 C 0
e caePb3.Scfld02_0       3508902 93 -  4147112 I
e caeJap4.Scaffold17990   191532 62 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I
e caeSp111.Scaffold582    354978 35 +   484378 I

a score=-239.000000
s ce10.chrX              2838509 20 + 17718866 aaaccgatactgctccttta
s caeRem4.Crem_Contig15   336923 16 -  1794024 AAACAGATGCATCTCA----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355013 20 +   484378 AAAAGAACACCACTTGCTCT
i caeSp111.Scaffold582  I 35 C 0
e caePb3.Scfld02_0       3508902 93 -  4147112 I
e caeJap4.Scaffold17990   191532 62 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I

a score=-295.000000
s ce10.chrX              2838529 4 + 17718866 aTCT
s caeRem4.Crem_Contig15   336939 4 -  1794024 AATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355033 4 +   484378 ATAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508995 4 -  4147112 ATTG
i caePb3.Scfld02_0      I 93 C 0
e caeJap4.Scaffold17990   191532 62 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I

a score=57220.000000
s ce10.chrX              2838533 315 + 17718866 ATACCTTTCGTCTGCATTGGAGTCTTTCCAGCTAACCATTTTTTAAATCCTTCA-GTGTATCTTGATAGGAGTAAGCCGTAGAAGTAAGTTTGTG--------------GCTCAGTTTG---TGAGGCGCCGAAAAAT--A--AAAAGTTTTAATGAT------TTTGAAAATATATAGAGCAATCAAACCAAAAAAAAAAGTGCAA--------------AAAAATTAGGC-AGATA-ATA------AAGAAAACTGAGGGAAAGTATTTTCATCTTCAGTATACCAAAAGA--AAATTGATAAGACATGATAACG--AAGGTTGACACCTGAGAATTTCT----TAGTGAGAAAAAGTGGGCAGACCGGGG
s caeRem4.Crem_Contig15   336943 312 -  1794024 ATACCTTTCGTCGGCATTCGA---TGACCAGTTAACCATTT-----TTGCTTCT-GATTACTT------------------CAAGTAGAAATTGATTCGTTTCAATTTGGTTCAGTTTG---AGCGgcgccagaaaa---aagttaagttTTTTAAAGAGTTAATTCTACG---GAAAGAGCAGAGAAACCAAA-ACGAAAGGACAG--------------AATAAA-AGTC-ATGGAGATA------AAGCAGCCGGGTGAAAAGTACTCTCACCCCCGAC-tttaaaaccag-aaaatgatAAGGAATGATAACGGTGAGGTTGACACCTGAGGCCTTCTTTCTTTGTGTGAAAAAGTGGGCAGACCGAGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355037 287 +   484378 ATACCTTTCATCTGCATTCGA---TGACCAGTTaaccattttt--gtttcttcc-gATTACTC------------------GTAGCAAAACTTCA--------------GCTTAGTTTG---AGCAGCGcccgaaaa---a--ataattttggaaagTGTTTGGTTTCAAc---taaagagcaaaaaaaccaaa----aaagtgcaa--------------aatgaagaatagaGGGAGATA------TAGcca-gaaataaaaagtacTCTCACCCCCAGT-CGTCCCACCA--AGAATGATAAGAAATGATAACG--AAAGTTGACACCTTCT-CTTTTG-----TGTGTCAGAAA-TGGGCAGACCGAGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3508999 284 -  4147112 GTACCTTTCGTCCGCATTTGA---TGACCAGTTAACCATTTT----TCACTTCAGGAATACTC------------------GTAGTGAGACTTCA--------------GTTCAGTTCG---GGCAGCGccagaaaa---a--ttaatttttattgataattCTTTTAAAC--GGAAAGAGCAGTAAAACT-AA----AAAGTGCAG--------------AATAAAGTATC-AATGAGATA------AAGCCA-CAAAGAAAAAGTACTCTCAACCCCGAc-tccaaaccaa--aaaatgataaggaatGATAACGA-AAAATTGACACCTGAGACCTTTG--------GTTGAAAA-TGGGCAGACCGAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   191594 287 +   357190 ATACCTCTCGTCGGCATTTGA---AGACCAGCTAACCATCTTT---TGTGTTCA---------------------------GTGGTTGAA-------------------GTTCAGTTTGCACCACGCCGCCGGAAAGttaa--ctattttttaaagag----------aaC---CAAAGAGAGACTAAACc-aa----aaagtgcagaaaattgaaaaaaaaatgaagagtc-AGAAAGATAGAGGTTAAGCGGTACAGTAAAAAGAACTCTCGACTCCAGC----AAAAGGAGCGATACGATAAGAATTGATAACG--ACGGTTGACACTCGGATGCCTTT------GTGAGAAAAG-TGGGTAGACCGAGG
i caeJap4.Scaffold17990 I 62 I 533
e cb4.chrX              17590141 1668 - 21540570 I

a score=25330.000000
s ce10.chrX              2838848 248 + 17718866 GGAACAAACCCAATAAAGAAATTATCAGTAAGAGTGAACTTAAAC-CTAGGCCAGTGGAAACACGACGCAATTTTAGCG--CCTTGGAA------TGATTCCGCCTATCG-------CTACCATTAAAAGAT----------AGGAAGAG---------GAGGATTGG-AAAACGCTGCAACCTCAGAA---AACCT-------------------TGATGCGCATG---AGAAAAAATTGATGGATAAATTGAGGAATGCACTTTT-------------------TT-GAGAGCGATTATTTTAATGTGGTAGAC--AGACCCA--------GTAAAG
s caeRem4.Crem_Contig15   337255 305 -  1794024 AAC-AAACCCCATTAAAGAacttatc----------aacttttttgtcagGGCCAT-AAAACACGTCAAAGCCTCTGCGCTTTTTGGAATTGAACTGATTCTGTCCGCCtccaaccaccaccaccaaaaccaaaaaaaagatggaaggagaaattggaaaagaaatgg--aaaggcggcaatcggaaa----aatctaaatCGTCAGGAACGGAACCGATGCGCGGa-----aaaaaaGTGACGGATAAATTG-GGAATGCACTTTTGTTCCTACTTTTATGAATCTTTGAGCGC----ATTCTA---CGATacctaaaaattga---gaatagtGGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355324 276 +   484378 AACTAAAACCCATTAAAGAACTTATCA---------AACTTTTCTGCTGAGGCAATAAAAACACAACGAAGCCTCTGCG--ACTTGGAATCTGACTGATTTCGCCTACTGCAACCTCCTTCTATCAAAATGA----------GGACGGAG---------AGGACATGG--GCAGGCGGCAATCGGAATAA--AATCTCATGTCGC----AAGGAACTGATGCGCaaccaaataaaaaattgatggaTAGATTG-GGAATGCACTTTTATT-GAAATCTcccataactt------------ttttgatttgatagtc--aaattga---------aagaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3509283 283 -  4147112 AAC-AAAACCCATTAAAGAAGTTATC----------AACTTTGTCGCTAGGGCGATAAAAACACGTC-AAGCATCTGCA--TCTTGGAATCGAAATGATTCCGCCTACTGCAAACTTCCACCAT------------------GGAAGGAG---------GAGGAATGGAAATAGtcagcaatcaaaaaaaagaatctcaaCCGGCAAGAAAGGAACTGATGCGcaac------aaaaagtgatggaTAAATTG-ACAATgcacttttatt-ttcttgttctgagtttt-gaaaga----attcaaatttgatagTC--AAATCTATTGACATTTGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   191881 533 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I

a score=16499.000000
s ce10.chrX              2839096 39 + 17718866 AAATAACCTTGAATCTTCAGCCAAGTAAAACGAATC-TCG
s caeRem4.Crem_Contig15   337560 40 -  1794024 TAGTAACCTTGAATTTTCACTCGTCCATAACGAATCCTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355600 40 +   484378 aaataacctTGGATTCTCATTGGTGCGCATCGGATCATCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3509566 40 -  4147112 ACGTAACCTTGAATTCCCATTGGTGCGCAACGAATCTTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   192414 39 +   357190 AAACAACCTTGAATTCTCAGTCAAGTGAAATAAATc-tca
i caeJap4.Scaffold17990 I 533 I 54
e cb4.chrX              17590141 1668 - 21540570 I

a score=9899.000000
s ce10.chrX              2839135 106 + 17718866 TAATATTCCACAACTCCACATCAT----AGTATTCTAATACCGAACTGTCACCATAAATTATACATTTCTATTTCACTTTGAAAAATCAAAT--TTATACCTACATA----------TGACC
s caeRem4.Crem_Contig15   337600  85 -  1794024 CAAC----------TTCGCATAGTTCGTAGTAAA----------ACTGTCACcataaatt-----ttcatatttcaccTCAGATTTTCGTAT--CTGATTCACCTTT----------TCACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    355640 102 +   484378 CGACTCCTCATATTTTCACATATTTCG-AATATG-------CCAACTGTCACCacaaatt-----tttatatttcaccTCAGATTTTCGTCTCActagttcttcttt-------ttctaaca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3509606 114 -  4147112 TAACTCGACATAATTCCACATATCTCG-AATAAACTAATACCCGACTGTCACcacaaatt-----tcaataattcacCTGAGATTTTTGtct--atgtttcttttttctatccctTCTCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   192453  54 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I

a score=48459.000000
s ce10.chrX              2839241 246 + 17718866 C----ATTCACGCTTGGTGGAGCA---ATAAT-TTGCA--AAACGAAGCGAAAATAGGAGTGA-AATAGaaa--aaaaagaaaagaaaagaaaaCGTGTAGGGGTTAGAATGAATAAATACA------GGGAGGTAAGAAGTTC--GTGCAGTTTA---GTTGAGAGCGAAGCATTCTCTCTTCTGCTCTCATGCTCCTATGAGCAT-----TTCTTGTTAAACTTGCTTCTTCGTTGTTTTTTTCTGT--TGTCTTTTTAGGCTCTTGGTTCCATC
s caeRem4.Crem_Contig15   337685 231 -  1794024 ACCG-ATTCACGCATGACAGAGCAATGATGTTCTTGCAAGAAAT--AACGAAAAACTAGGGGG---TCGAAA--AGAGTGTTGAG--------A-----------GAGAATGAATAAATACATAGAGGGGGAGGTAACAAGTTCATGCG-AGTTTA---GTTGAGAGCAGAGCA--CCCTTTTTTGCTCTCATGCTCCTGTGAGCAt-----ttcttgttaaaatttcttcttc------tttttctgt--tgtcttttttgtcgacttgtttcttc
i caeRem4.Crem_Contig15 C 0 I 243
s caeSp111.Scaffold582    355742 229 +   484378 tTGA-ATTCACGCATGGAAGAGCA---ATGTTCTTGCAAGAAgcgaaacgaaaaatgaagggG-AGTTGAAG--TGAGGGGTGGGACAGAAGGa-----------gagaatgaataaataCATG---AAGGAGGTAACAAGTTCGTGGGCAGTTTAGTTGTTGAGAGCA-AGCA-CCCCTTTTTTGCTCTCATGCTCCTGTGAG----------CTtgttaaat---ttttctc------tttttctgt--tgtcttttt--ccgac--gtttcttc
i caeSp111.Scaffold582  C 0 I 15
s caePb3.Scfld02_0       3509720 236 -  4147112 CAGAGATTCACGCATGGTAGAGCA---ATGTTCTTGCAagaattgaaacgaaaaatgaagggGTGGATGGGGGCTGTGAAGTgagtgagagaaa-----------gagaatgaataAATACATG----GGGAGGTAACAAGTTC--GAGCAGTTTA---GTTGAGAGCA-AGCA--CCCTTTTTTGCTCTCATGCTCCTGTGAGCAT-----TTCTTgttaaatttcttttttc------tttttttgt--tgtctttttcgCCAAC--GTTTCTTC
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17990   192507 212 +   357190 ----cctttccgcTTGGCGGAGCA---ATGTTTTC---AAATATGATGCAAAAACCCGCGGAA------ATA--TAAGAATAAAG--------A-----------ATGAATGCGTAAATACGGG----CCGAGGTAGCAAGTTC--GTTAAGTGTC---G--AAGAGCA-AAcgcgtttttttcttcattttcgcttTCATGAGCATACTTGCTCcttttaagtttttttcttc------tcctccCTCCATGCCCATATACTCATC----------
i caeJap4.Scaffold17990 I 54 C 0
e cb4.chrX              17590141 1668 - 21540570 I

a score=2598.000000
s ce10.chrX              2839487 6 + 17718866 AACCCT
s caeSp111.Scaffold582    355986 6 +   484378 aattcT
i caeSp111.Scaffold582  I 15 C 0
s caePb3.Scfld02_0       3509964 6 -  4147112 AATTCT
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17990   192719 6 +   357190 AATTCT
i caeJap4.Scaffold17990 C 0 I 163
e cb4.chrX              17590141 1668 - 21540570 I
e caeRem4.Crem_Contig15   337916 243 -  1794024 I

a score=650.000000
s ce10.chrX              2839493 18 + 17718866 ATTACGAAGGCGCGTTCT
s caeSp111.Scaffold582    355992 15 +   484378 TATAC---TGCGCGTTCT
i caeSp111.Scaffold582  C 0 I 227
s caePb3.Scfld02_0       3509970 15 -  4147112 CAAAA---GGCGCGTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   192725 163 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I
e caeRem4.Crem_Contig15   337916 243 -  1794024 I

a score=624.000000
s ce10.chrX              2839511 8 + 17718866 AAAATGGA
s caePb3.Scfld02_0       3509985 8 -  4147112 AGAATGGA
i caePb3.Scfld02_0      C 0 I 191
e caeJap4.Scaffold17990   192725 163 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I
e caeSp111.Scaffold582    356007 227 +   484378 I
e caeRem4.Crem_Contig15   337916 243 -  1794024 I

a score=0.000000
s ce10.chrX              2839519 706 + 17718866  
e caePb3.Scfld02_0       3509993 191 -  4147112 I
e caeJap4.Scaffold17990   192725 163 +   357190 I
e cb4.chrX              17590141 1668 - 21540570 I
e caeSp111.Scaffold582    356007 227 +   484378 I
e caeRem4.Crem_Contig15   337916 243 -  1794024 I

a score=6991.000000
s ce10.chrX              2840225 389 + 17718866  
s cb4.chrX              17591809 369 - 21540570  
i cb4.chrX              I 1668 C 0
s caeRem4.Crem_Contig15   338159 443 -  1794024  
i caeRem4.Crem_Contig15 I 243 I 171
s caeSp111.Scaffold582    356234 427 +   484378  
i caeSp111.Scaffold582  I 227 I 135
s caePb3.Scfld02_0       3510184 467 -  4147112  
i caePb3.Scfld02_0      I 191 I 15
s caeJap4.Scaffold17990   192888 440 +   357190  
i caeJap4.Scaffold17990 I 163 I 3298

a score=2526.000000
s ce10.chrX              2840614 46 + 17718866 TTGTGTTTCCACTCACGTCAGTACGTGTTTTTAGAAGGAGATTTTA
s cb4.chrX              17592178 24 - 21540570 ----------------------TGTGGTCATCAGAAGAAGACttta
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3510666 46 -  4147112 ttcttttttctctcacgtCAGTTCATATCTTCAgaagaatattcta
i caePb3.Scfld02_0      I 15 I 102
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e caeSp111.Scaffold582    356661 135 +   484378 I
e caeRem4.Crem_Contig15   338602 171 -  1794024 I

a score=188.000000
s ce10.chrX              2840660 7 + 17718866 TGATCTT
s cb4.chrX              17592202 7 - 21540570 ctatttt
i cb4.chrX              C 0 I 3663
e caePb3.Scfld02_0       3510712 102 -  4147112 I
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e caeSp111.Scaffold582    356661 135 +   484378 I
e caeRem4.Crem_Contig15   338602 171 -  1794024 I

a score=0.000000
s ce10.chrX              2840667 972 + 17718866  
e caePb3.Scfld02_0       3510712 102 -  4147112 I
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeSp111.Scaffold582    356661 135 +   484378 I
e caeRem4.Crem_Contig15   338602 171 -  1794024 I

a score=126.000000
s ce10.chrX              2841639 5 + 17718866 GTTCT
s caeSp111.Scaffold582    356796 5 +   484378 GCTGT
i caeSp111.Scaffold582  I 135 C 0
e caePb3.Scfld02_0       3510712 102 -  4147112 I
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeRem4.Crem_Contig15   338602 171 -  1794024 I

a score=189.000000
s ce10.chrX              2841644  9 + 17718866 AGAAAATG-------G
s caeSp111.Scaffold582    356801 10 +   484378 CGAAAATG------AG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3510814 16 -  4147112 AGAACATGTTGCGAAG
i caePb3.Scfld02_0      I 102 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeRem4.Crem_Contig15   338602 171 -  1794024 I

a score=53809.000000
s ce10.chrX              2841653 561 + 17718866  
s caeRem4.Crem_Contig15   338773 660 -  1794024  
i caeRem4.Crem_Contig15 I 171 I 16
s caeSp111.Scaffold582    356811 583 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3510830 583 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I

a score=-442.000000
s ce10.chrX              2842214 9 + 17718866 AGGCTGTTT
s caeSp111.Scaffold582    357394 9 +   484378 GGAAACGAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3511413 9 -  4147112 GGAAACTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeRem4.Crem_Contig15   339433 16 -  1794024 I

a score=-2061.000000
s ce10.chrX              2842223 105 + 17718866 ----------TCAAAAAAAA---------GTGTTACACT--------GCAAACTCCTGCCAGCCAGCTGTGAAGAAAAAAAAAGAAATCATAAAGATTTTACAACTAGATCTAAATGTTCGTGAGAAGAAAA------------------------------------------------------------
s caeRem4.Crem_Contig15   339449 149 -  1794024 ----------GCaaaaaaaC-TGCGAAAT-TGTTACACACTCCGGTTGCGGACTA--ACCGACCAGCTGCG---ataaagataaagataaa--aaatttaa----------taaaaaagtgtaataaggaaaatGTATGCGTTGGGTGGTGAGGAGATATT--------------GCATTTGAGcgaagaaa
i caeRem4.Crem_Contig15 I 16 C 0
s caeSp111.Scaffold582    357403 161 +   484378 T---GGAGGGGCAAAAAACCTTGCGGAATGTGTTACACT------TAGCCGACTA--ACCGACCAGCTgcgaa-aaagagataaagata----aaatttaa----------agaatCTGTGTAATa-aaaaaaCGTGTTAG-AAGAAAGTGAACAT-TATTACAAGCATAGATAAACAATTAGAAACAGA--
i caeSp111.Scaffold582  C 0 I 21
s caePb3.Scfld02_0       3511422 145 -  4147112 TGACGGAGGGACaaaaaaaC-TGCGGAATGTGTTACACTCT--GCCAGTCGACTA--AGAGACCAGCTGTG---AAAGGGATAAAGATAAAggaaatttaa---------taaaaattgtgtattgcaaaaaacttgtt----------caaacat-tatt-----------------attaaaagaaaa--
i caePb3.Scfld02_0      C 0 I 90
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I

a score=-2126.000000
s ce10.chrX              2842328 49 + 17718866 ------------GATA-----------AAAAAGAATAACACTGCACTAGCCGAACT-TATTTTTCACACAAAA-
s caeRem4.Crem_Contig15   339598 64 -  1794024 gatttttattagaaaagattttctatgaaaagaggaaaaac---aaTGACGGAAGTAAAGTT-------GAGAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    357585 43 +   484378 ------------aaaa-----------aaaacggaTGAAACTGTTATGAAGGAAGT-GAGTT-------GAGAG
i caeSp111.Scaffold582  I 21 C 0
e caePb3.Scfld02_0       3511567 90 -  4147112 I
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I

a score=46490.000000
s ce10.chrX              2842377 132 + 17718866 AACGAGAACTTATCGGAAGA-TTTGAAATGCGATAGGAGGAGGATGGTGCGCAGT---------------ACAGTAGAC-----AAAAAATAAACCGTCTCTGTTAAG---------CCACACA---AAGGCTTTTCGGTACATACAACTAGAGTTATTTTTAAA
s caeRem4.Crem_Contig15   339662 156 -  1794024 AACGAGAACTTGTCGGAAGA-TTTGAAATGCGAT------CGGATGGTGCGCAGTTTACTCAGTGCTGCAGTAGCAgactatttgaaaaataaaccg--TTTGTTAAGCTGACCAATCCACAAACCCAATGCTCTTCTGTACATAAAATTGGagttatttttgaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    357628 146 +   484378 AACAAGAACTTATCGGAAGA--TTGAAATGCGAT------AGGATGGTGCGCAGC--------TGCAGCAGCAGTAGAcgattagaaaaataaactg--tCTGTTAATCTTACCATTCCACAAACACAAGGATTTTT-GTACATAGAACTGGagctatttttaaa
i caeSp111.Scaffold582  C 0 I 254
s caePb3.Scfld02_0       3511657 149 -  4147112 AACAAGAACTTAtcggaagattttgaaatgcGAT------AGGGTGGTGCGCACC--------AGCTGCAGCAGTAGactattggaaaaataaaccG--TCTGTTAAGCTTACCATTCCACAAACACAAGGCTTTTCGGTACATAGAGCTGGAGTTATTTttaaa
i caePb3.Scfld02_0      I 90 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I

a score=340.000000
s ce10.chrX              2842509 3 + 17718866 AGT
s caeRem4.Crem_Contig15   339818 3 -  1794024 gat
i caeRem4.Crem_Contig15 C 0 I 73
s caePb3.Scfld02_0       3511806 3 -  4147112 gat
i caePb3.Scfld02_0      C 0 I 316
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeSp111.Scaffold582    357774 254 +   484378 I

a score=0.000000
s ce10.chrX              2842512 1390 + 17718866  
e caePb3.Scfld02_0       3511809  316 -  4147112 I
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeSp111.Scaffold582    357774  254 +   484378 I
e caeRem4.Crem_Contig15   339821   73 -  1794024 I

a score=755.000000
s ce10.chrX              2843902 8 + 17718866 GTAAACGT
s caePb3.Scfld02_0       3512125 8 -  4147112 GTAAACGT
i caePb3.Scfld02_0      I 316 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeSp111.Scaffold582    357774 254 +   484378 I
e caeRem4.Crem_Contig15   339821 73 -  1794024 I

a score=678.000000
s ce10.chrX              2843910 5 + 17718866 -TGTAA
s caeRem4.Crem_Contig15   339894 5 -  1794024 -tggaa
i caeRem4.Crem_Contig15 I 73 C 0
s caePb3.Scfld02_0       3512133 6 -  4147112 TTGtag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I
e caeSp111.Scaffold582    357774 254 +   484378 I

a score=-2376.000000
s ce10.chrX              2843915 11 + 17718866 AAAATCACTGA----
s caeRem4.Crem_Contig15   339899  9 -  1794024 --aa----atacact
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    358028  7 +   484378 aaaa----ata----
i caeSp111.Scaffold582  I 254 C 0
s caePb3.Scfld02_0       3512139 10 -  4147112 -aaatttcata----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I
e cb4.chrX              17592209 3663 - 21540570 I

a score=1264.000000
s ce10.chrX              2843926 15 + 17718866 ----TTTATATAT-AAACAG
s cb4.chrX              17595872 15 - 21540570 ----tttaaaaac-agaaaa
i cb4.chrX              I 3663 C 0
s caeRem4.Crem_Contig15   339908 15 -  1794024 ----tttttaTAT-AAACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    358035 15 +   484378 cagattTATGAAC-----AG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3512149 20 -  4147112 aatttttataAACAGGAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   193328 3298 +   357190 I

a score=116151.000000
s ce10.chrX              2843941 489 + 17718866  
s cb4.chrX              17595887 496 - 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig15   339923 406 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    358050 469 +   484378  
i caeSp111.Scaffold582  C 0 I 18
s caePb3.Scfld02_0       3512169 451 -  4147112  
i caePb3.Scfld02_0      C 0 I 65
s caeJap4.Scaffold17990   196626 447 +   357190  
i caeJap4.Scaffold17990 I 3298 C 0

a score=-5205.000000
s ce10.chrX              2844430 15 + 17718866 CGTCGC--------------TGGGAC---TAG
s caeRem4.Crem_Contig15   340329 12 -  1794024 --------------------TAAGGCATACAC
i caeRem4.Crem_Contig15 C 0 I 14
s caePb3.Scfld02_0       3512685 29 -  4147112 CGACACAACTCGATTGCCTTTGAAGC---CAT
i caePb3.Scfld02_0      I 65 I 23
s caeJap4.Scaffold17990   197073 10 +   357190 --------------CTACTTTGGG--------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596383 37 - 21540570 I
e caeSp111.Scaffold582    358519 18 +   484378 I

a score=-6019.000000
s ce10.chrX              2844445 15 + 17718866 TGGATG----------------------------------TTTCTGAC-A
s caeRem4.Crem_Contig15   340355 14 -  1794024 TGT-TG----------------------------------TTTCTGATA-
i caeRem4.Crem_Contig15 I 14 C 0
s caeSp111.Scaffold582    358537 14 +   484378 TGTGTG----------------------------------TTTCTGAT--
i caeSp111.Scaffold582  I 18 C 0
s caePb3.Scfld02_0       3512737 48 -  4147112 tgtttgaaatgttttgctcaacatttctttagttgaccactttttgtt--
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold17990   197083 11 +   357190 -GGGtt----------------------------------tttttA----
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596383 37 - 21540570 I

a score=-26007.000000
s ce10.chrX              2844460  47 + 17718866 TAGAATTGTAAAATCAGCTAGCACA--------------------------------------------------------------------GGCTCTAAAAATATCGACTAAC--
s cb4.chrX              17596420  29 - 21540570 ---------------------------------------------------------TAAGTTT-----------------------------ATAACTAGGAAACTTGACTAAC--
i cb4.chrX              I 37 I 28
s caeRem4.Crem_Contig15   340369  22 -  1794024 ---------------------------------------------------------------------------------------------ATAACTAGCAAGATTAATTAat--
i caeRem4.Crem_Contig15 C 0 I 30
s caeSp111.Scaffold582    358551  23 +   484378 ---AAT--------------AGCTA-------------------------------GCAAATAA--------------------------------------------GACTAAc--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3512785 112 -  4147112 ---aactttaaaggcaactgagatatgctgctcggaacatgcagtactgggtgtgcgtaaattacaggatttacggtatatgTGTTTCTGATAATATCTAGCAAGTTTGACtaac--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   197094  40 +   357190 ------------------------------------------------TGTTACCTATCAGTTT-----------------------------GCATAGATTGGAATTGTCTATATC
i caeJap4.Scaffold17990 C 0 C 0

a score=-3439.000000
s ce10.chrX              2844507 12 + 17718866 ---------------CTATACATT----------CAA
s caeRem4.Crem_Contig15   340421 12 -  1794024 ---------------TCATATCTT----------CGA
i caeRem4.Crem_Contig15 I 30 I 23
s caeSp111.Scaffold582    358574 20 +   484378 -----------------ctatttttgatgaataacaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3512897 10 -  4147112 -----------------ctatttt----------caa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   197134 37 +   357190 CTATTTCGGAAAACGCTTTGTTTTTGTTCACAGATAA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596449 28 - 21540570 I

a score=-3773.000000
s ce10.chrX              2844519 21 + 17718866 --AATATACTCAAA----------AATCTCGAA-----
s caeSp111.Scaffold582    358594 24 +   484378 --aaaatagaaaaataat------aatttca-a-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3512907 31 -  4147112 --aaatgaaataactaATTGAGGCAATCTCATA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   197171 31 +   357190 AAAATTGGAGCAGACAA-------GATTCaagaaacaa
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596449 28 - 21540570 I
e caeRem4.Crem_Contig15   340433 23 -  1794024 I

a score=1820.000000
s ce10.chrX              2844540 2 + 17718866 TT
s caeRem4.Crem_Contig15   340456 2 -  1794024 tt
i caeRem4.Crem_Contig15 I 23 I 1
s caeSp111.Scaffold582    358618 2 +   484378 tt
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3512938 2 -  4147112 TT
i caePb3.Scfld02_0      C 0 I 55
s caeJap4.Scaffold17990   197202 2 +   357190 tt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596449 28 - 21540570 I

a score=-5383.000000
s ce10.chrX              2844542 32 + 17718866 -TAAAAAAAAAACATATGAGAAAATA----AAAAT---AC
s cb4.chrX              17596477 33 - 21540570 -GAAAAAATACACGGat-tccaaatattttcaaat-----
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   340459 29 -  1794024 -gaaaacacaAACTAac-aggaaatg----aaaat-----
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    358634 32 +   484378 -tagaaaaataactaaC-----AACATTGTGGAAtcac--
i caeSp111.Scaffold582  I 14 I 3
s caeJap4.Scaffold17990   197204 33 +   357190 taaaaaaaaggaaaagt-aaaaaaaaactaataa------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3512940 55 -  4147112 I

a score=28035.000000
s ce10.chrX              2844574  94 + 17718866 -GAAACAAAACAAAATACTGGGCAATA-ATGGCGAACACCCAGAAAAT----------ATCAAATTTGAACACG-----TTTTGCAAAA--ATCG-AAGTAGAA-TTTCGCTAAA---
s cb4.chrX              17596510 105 - 21540570 ---------atttaataCTGGAAATTATTTAGCAAAcacccaaaaaattattttcaaaaaaaaattgaaactcgttattttttacaaaatcagTG-AAGTAGTGTTTTCTCTGAA---
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig15   340488  90 -  1794024 --------aaaataatactGGACCATA-ACGGCAAACACccaaaaactc---------agaaaatttgaacacg-----TTTTACAAAATCAAAG-AAGTAGTA-TTTCGCTAAG---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    358669  95 +   484378 ---aaaatatcaTAATACTGGACAAT--TTGGCAAAAGacccaaaatttt--------caaaatattgaacACG-----TCTTGCAGAATCAATG-AAGTAGAA-TTTCGCTAAA---
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3512995  93 -  4147112 ---aaaacaaaataatactGGAGAATA-ATGGCAAACACCCAAAAAGTTT-----------AATATTAAACACG-----TCTTGTAGAATCAATG-AAGTAGAA-TTTCGCTAAA---
i caePb3.Scfld02_0      I 55 C 0
s caeJap4.Scaffold17990   197237  90 +   357190 taataataataataatactgAACAAAG-TTGGCAAACACCCAGATTTTC------------GCAGTCAGACACG-----T----CGGAATCAtagaaaatagaa------ataaaaaa
i caeJap4.Scaffold17990 C 0 C 0

a score=2717.000000
s ce10.chrX              2844668 30 + 17718866 TCAGACAACACACAAAAACTGGTAAGGATC
s caeRem4.Crem_Contig15   340578 29 -  1794024 TCAGACAGCGCA-CAGGACTGGTAAGGATG
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    358764 20 +   484378 TCAGACAACACA-AAAGTGGA---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513088 29 -  4147112 Tcagacaacaca-aaaaataactaCGGGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   197327 29 +   357190 tgaaaagagaac-aaaaaGTGGTTGGAATT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17596615 17 - 21540570 I

a score=122074.000000
s ce10.chrX              2844698 299 + 17718866 --GATTTCTA------GACAA-GGAATGATACAGTGTTATTGAGATTTTTGTTGAAGAAAAAAGGAGAAG--TAAAAGCAAATTGGGTTTTTTGGTTTTTGGTTTTTTTTTCCATTCACTCCGAGCTCCAGCTTGGATCAATCATTCGGAGCCTGCAAATCAACTGATCACACAAGTATTCGGAAGTTGGAGAATCATTGTTGATTATGGCGAACTCCACGTGAGCTTTGTGTTCTGGCGGCAGTACAGCGACACCAATCTCCACTCCAGATGGTAATGAGAGGCGTCTCATTTCCGTTACTG-----AAAAATG
s cb4.chrX              17596632 293 - 21540570 --GATTGTT-------ATAAA-GGAATGATAC-----TAAGAGGGATTTTTGAGATGGTTTTGAAACTGG--TAAGACGATGGGagg---ggtgggggggggggggatgaCTTGATCACTCGGAACTCCAATTGGGATCAATCATTCGTAGTCGGCAAATCAACTGGTCGCACAAGATTTCAGAAGTTGGAGAATCGTTGTTGATGATTGCGAATTCCACGTGAGATTTATGCTCTGGAGGTAATACGGCAACTCCGATCTCGACACCAGATGGTAGGGAGAGACGACGcatttcggttactgtaaatgaA--TG
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig15   340608 268 -  1794024 --GATTCT------------A-GGAATGATTC-----TAGAGGGG--TTTTGAGATGTTCAGTAAACTGgtttgaaacaaagaaagt---aTTGG---------------TTGTTTTACTCTGAAATAAGAGTGGGGTCAATGTATCGCAAGTGAGATATGAGCTGATCGCAAAGGAAATCGGAATTTGGTGAATCATTGTTAATAATCGCAAATTCGACGTGAGACTTGTGCTCTGGAGGTAACACTGCAACACCTATCTCCACTCCGGACGGTAATGACAGACGTCTCATTTCTGTTGCTG-----AAA--TG
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    358784 266 +   484378 ---ATTTCAAAGCttgagaaatggaatgaTAC-----TAACGGA-------TTGAGATTTGAAGAACAAG--TAAGGCCAGA---------CTCG--------------ATGATTTCATTCCGAACTCCAATTGGGATCAATCATTCGTAATCGACAAATCAGTTGATCACAAAGCATTTCAGACGTCGGCGAGTCGTTGTTTATGATTGCAAACTCGACATGAGCTTTGTGTTCCGGTGGAAGCACAGCTACACCGATTTCAACTCCAGATGGCAATGATAGGCGTCTCATTTCGGTCACTG-----AAA----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513117 275 -  4147112 --GGTTTCTAAGTAGGAATAA-GGAATgataa-----aaacaaagatttcTGTGAGATTTGAAGAACATG--TAAAATCAAAAA------GCTCG---------------CAATTTTACTCCGAGCTCCAATTTGGATCAACCATTCGCAGTCGACAAATCAACTGATCACACAATAATTCCGACGTTGGCGAGTCAGTGTTAATAATTGCAAATTCCACATGGGCTTTGTGTTCTGGTGGTAACACTGCTACACCAATTTCAACGCCAGATGGCAATGAAAGACGTCTCATTTCGGTTGCTA-----AAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   197356 247 +   357190 CAAATTTCT-------CTAGA-TCAGTCATTT-----TACCCAAAACT---------------GAACACA--Taaaa---------------------------------aaaTCTCATTCAGAGCTCCAATTCGGGTCAATCATGCGAAGCCGACAAATGAGTTGGTCGCACAGCATTTCCGACGTGGGAGAGTCTTGATTGAGGATGGCAAATTCCACGTGAGATTTGTGCTCCGGTGGTAAAACTGCTACACCAATTTCAACTCCAGACGGAAGTGAGAGGCGGCGCATTTCGGTCACTA-----AAAGATG
i caeJap4.Scaffold17990 C 0 I 1059

a score=-599.000000
s ce10.chrX              2844997 9 + 17718866 AACAGAGTT
s cb4.chrX              17596925 9 - 21540570 ATTAGGATC
i cb4.chrX              C 0 I 610
s caeRem4.Crem_Contig15   340876 9 -  1794024 TATAAAGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    359050 4 +   484378 -ATAG----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3513392 0 -  4147112 C
e caeJap4.Scaffold17990   197603 1059 +   357190 I

a score=-394.000000
s ce10.chrX              2845006 9 + 17718866 TAGCTAAGT
s caeRem4.Crem_Contig15   340885 6 -  1794024 --GTTAAT-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    359054 9 +   484378 TTGTTATTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513392 8 -  4147112 -TGTTAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   197603 1059 +   357190 I
e cb4.chrX              17596934 610 - 21540570 I

a score=-5537.000000
s ce10.chrX              2845015 21 + 17718866 -------------AAGTTAAAA--TTGAAAATTTGT
s cb4.chrX              17597544 21 - 21540570 -------------aagaagaaa--ttttaaactttc
i cb4.chrX              I 610 C 0
s caeRem4.Crem_Contig15   340891 14 -  1794024 --------------------GA--TCTAAAATTGCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    359063 22 +   484378 ATGAAAATACTGTAAAAGGAAA--------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513400 36 -  4147112 TTGCatgaattggaagaagaaaaatatagaTCTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   197603 1059 +   357190 I

a score=86705.000000
s ce10.chrX              2845036 125 + 17718866 AAACT---GACCTTGTGGCTCATAAACCATTTCATGAGACTCGGAAAATGGAATTTTCAGAATGTTCAAGCTTGCCTTCAGTTCATCGATAACTTCAGTAAACGGTAATGTGCACACAATGCTCTGAA
s cb4.chrX              17597565 125 - 21540570 aaaca---AACCTTGTGGCTCGTAAACCATTTCCTGAGTCTCTGCAAATGGGATCTTGAGAATGTTCAAACTGGATTTTAGCTCCTCCACAACTTCGGCAAATGGTAGTGTGCACACAATGCTctgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   340905 128 -  1794024 AAATAACTAACATTCTGATTCAGGAACCACTTCATGTGTTTCTTGGAATGGAATCTTCATCGAATTCAAACTGGATTTGAGTGTATGCACAACTTCATCAAACGGTAGTATAGTAACACAACTCTGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    359085 121 +   484378 -------GTACCTTGTGGTTCATAAACCATTTCGTGAAATTCTGAGAATGGGATTTTCAATATATTCAGACTTGATTTGAGTTCCTCAATCACTTCAGCAAACGGCAAGGTGCACACAATACTCTGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513436 128 -  4147112 GAAAAACATACCTtgtggttcaaaaaccatttcttgAGTTTCCTGAAAAggaatcttcaaaatgttgagaCTTGATTTGAGTTCTTCAATGACTTCAGCAAAAGGAATCGTGCAGACAATACTCTGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   198662 125 +   357190 aaaca---aacctTGTTGCTCGCAAACCACTTCATTTGTTTCAGAGaatggaattttcaaaatgttcaaactCGACTTAAGCTCATCAACCACTTCGGACAAGGGTATCGTGCAAACAATGCTCTGAA
i caeJap4.Scaffold17990 I 1059 I 36

a score=422.000000
s ce10.chrX              2845161 1 + 17718866 A
s cb4.chrX              17597690 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   341033 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    359206 1 +   484378 A
i caeSp111.Scaffold582  C 0 I 175
s caePb3.Scfld02_0       3513564 1 -  4147112 A
i caePb3.Scfld02_0      C 0 I 337
e caeJap4.Scaffold17990   198787 36 +   357190 I

a score=-1046.000000
s ce10.chrX              2845162  7 + 17718866 -------------------------AAAGAAT
s cb4.chrX              17597691 32 - 21540570 catgtttttcaattttcaatacattttgaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   341034  7 -  1794024 -------------------------TGAAAAT
i caeRem4.Crem_Contig15 C 0 I 189
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e caeJap4.Scaffold17990   198787 36 +   357190 I
e caeSp111.Scaffold582    359207 175 +   484378 I

a score=-2852.000000
s ce10.chrX              2845169 456 + 17718866  
s cb4.chrX              17597723 589 - 21540570  
i cb4.chrX              C 0 I 194
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e caeJap4.Scaffold17990   198787  36 +   357190 I
e caeSp111.Scaffold582    359207 175 +   484378 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=0.000000
s ce10.chrX              2845625 167 + 17718866 TACACAATTGTTAATACGATAAATAAAACCGTAAAAGcacgtggtgccaggctgtcccataacggtttgatctacaaaaattgcggaaattttttcccccaaaaaaatgtgacgtcagcacgttcttaaccatgcaaaactaattTTTTTTTCATCGACGACTTCCA
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e caeJap4.Scaffold17990   198787  36 +   357190 I
e cb4.chrX              17598312 194 - 21540570 I
e caeSp111.Scaffold582    359207 175 +   484378 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=503.000000
s ce10.chrX              2845792 70 + 17718866 AAAAGTGACAAAAa-------gatt----------------tttcaaaatttcaaaaaatcatttaaaatttagaaatttttaaaaaaatttt
s cb4.chrX              17598506 93 - 21540570 aaaattgactaaaattATTTCGATTATCGCTGCTAATCAAGTTGTAAGTTGTAAGAGACACTCTCCAAATGCACCTATTtatataaacatttt
i cb4.chrX              I 194 I 32
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e caeJap4.Scaffold17990   198787 36 +   357190 I
e caeSp111.Scaffold582    359207 175 +   484378 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=0.000000
s ce10.chrX              2845862 39 + 17718866 tgctatgatatttagtGCCGGGTTGACTTACAGAAAAAG
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e caeJap4.Scaffold17990   198787 36 +   357190 I
e cb4.chrX              17598599 32 - 21540570 I
e caeSp111.Scaffold582    359207 175 +   484378 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=191.000000
s ce10.chrX              2845901 2 + 17718866 CT
s caeJap4.Scaffold17990   198823 2 +   357190 cT
i caeJap4.Scaffold17990 I 36 C 0
e caePb3.Scfld02_0       3513565 337 -  4147112 I
e cb4.chrX              17598599 32 - 21540570 I
e caeSp111.Scaffold582    359207 175 +   484378 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=180.000000
s ce10.chrX              2845903 1 + 17718866 A
s caeSp111.Scaffold582    359382 1 +   484378 A
i caeSp111.Scaffold582  I 175 C 0
s caePb3.Scfld02_0       3513902 1 -  4147112 A
i caePb3.Scfld02_0      I 337 C 0
s caeJap4.Scaffold17990   198825 1 +   357190 G
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17598599 32 - 21540570 I
e caeRem4.Crem_Contig15   341041 189 -  1794024 I

a score=736569.000000
s ce10.chrX              2845904 963 + 17718866  
s cb4.chrX              17598631 956 - 21540570  
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig15   341230 953 -  1794024  
i caeRem4.Crem_Contig15 I 189 C 0
s caeSp111.Scaffold582    359383 957 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3513903 956 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   198826 974 +   357190  
i caeJap4.Scaffold17990 C 0 I 2

a score=5550.000000
s ce10.chrX              2846867 6 + 17718866 TGAAAA
s cb4.chrX              17599587 6 - 21540570 tgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   342183 6 -  1794024 tgaaaa
i caeRem4.Crem_Contig15 C 0 I 35
s caeSp111.Scaffold582    360340 6 +   484378 tgaaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3514859 6 -  4147112 tgaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   199800 2 +   357190 I

a score=-1107.000000
s ce10.chrX              2846873 1 + 17718866 A-
s cb4.chrX              17599593 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    360346 1 +   484378 a-
i caeSp111.Scaffold582  C 0 I 125
s caePb3.Scfld02_0       3514865 1 -  4147112 a-
i caePb3.Scfld02_0      C 0 I 179
e caeJap4.Scaffold17990   199800 2 +   357190 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=-1155.000000
s ce10.chrX              2846874 136 + 17718866 AGTA--------AACAGGATGTA--ATAATCCGAGGTGATAATTGCAAATCCATTTCATTAGCA---------ATAATG-------GAAAAAGTCT-----------------AAATTACCATAGCATTTTTTTTTAATTTTTCAC------AAAGTGAGCTGATTTGAGATTTTTTGAACCGTT
s cb4.chrX              17599594 170 - 21540570 gttattaTTGAGATGAGAATGTAGGAAAATC----ATGGCggttacaaa--aattttgttgtcaTTGGGGTGCAAAATGATTCAGTGATAAAGTATCCTGAATTCGGGCGCAAAAAATAcctgagaa----ttttgaattttgtacccGCGAATAGTggat---tttgtga--tttcaaaTCACT
i cb4.chrX              C 0 I 63
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800   2 +   357190 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189  35 -  1794024 I

a score=0.000000
s ce10.chrX              2847010 70 + 17718866 AGACTGTCACAGCTTTAAATTGGTATGCAGTTTTAAAGGCTCAGTTTTTTTTTTTGCTTGAATAGACTGA
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800  2 +   357190 I
e cb4.chrX              17599764 63 - 21540570 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=1049.000000
s ce10.chrX              2847080 189 + 17718866 AATTTTCTTAAAAATTACCGAATTTCATTAAATGAGTTTTCACAATATACCATATTATCAAAAACAAACTATTTTATCAAAGTT------AATTTGGCTCGCCACAAAAATTTTTAAGAATTTTATAAAAGGTTCCATTAGAGGTCGTCTTTTAGTCTATTAAAGCAAAACCTGA---CAAACTTTAAATTTAAAAAA
s cb4.chrX              17599827 172 - 21540570 AATTTTAtccaaagttttagaaatgagaaaataaagtttgcaaaaaatg-cGCATTTTTG-----AGTCGATTTTGCCCAATTTTAAGAGAATGGAGCTCGACGgacaagtttccaa----------------tcacttagaaat----ttttgagcaaGTAAAACAATCCTAGATTGCagactttgcattcacagaa
i cb4.chrX              I 63 I 37
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800   2 +   357190 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189  35 -  1794024 I

a score=0.000000
s ce10.chrX              2847269 41 + 17718866 AAACGAATGTGAATACTGGTGGACGGAAAATGCCAAtcagt
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800  2 +   357190 I
e cb4.chrX              17599999 37 - 21540570 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=477.000000
s ce10.chrX              2847310 174 + 17718866 agttctacaaaataaccctattgagcatattttcttaataattctcattaaaatatacaatttagaaaaat---attcgcttagtgaaagcaatcgaaaaactgctcgaaa------attgtctgaaag------------------ttgaaaattgaccga---aaCACTTTTTGATATATTTTTTTTTAGGAAAAATATCCA
s cb4.chrX              17600036 172 - 21540570 aattctaaaaaac-----------gcctattttc-------ttctgttttcaatacaaaaacgAGCCAAATCAGATGTATTT-----CAGCAATCGGCAAAAAGCTTAAAagttaggattttttgaaaatttctgtgattacaaatttttaaactaggTCAGTTTTACACtctctgaaatgttc---------aaaacagTCCA
i cb4.chrX              I 37 I 94
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800   2 +   357190 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189  35 -  1794024 I

a score=0.000000
s ce10.chrX              2847484 61 + 17718866 GATAACATGCTCCACTGGCTATTTTTTTGGAAATTTTATTGTCTATTGCAAGACACTGCTG
e caePb3.Scfld02_0       3514866 179 -  4147112 I
e caeJap4.Scaffold17990   199800  2 +   357190 I
e cb4.chrX              17600208 94 - 21540570 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=521.000000
s ce10.chrX              2847545 41 + 17718866 TTACTGGTA----TTTTCAGCACCAGTTTTTTATAGAAACTT-----ATT
s caePb3.Scfld02_0       3515045 50 -  4147112 ttatTGGTACAAATTCTTTGCATCCGTTAATCATTGAGAATTGGCACAGT
i caePb3.Scfld02_0      I 179 C 0
e caeJap4.Scaffold17990   199800  2 +   357190 I
e cb4.chrX              17600208 94 - 21540570 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=-1780.000000
s ce10.chrX              2847586 1 + 17718866 --C
s cb4.chrX              17600302 1 - 21540570 -c-
i cb4.chrX              I 94 C 0
s caePb3.Scfld02_0       3515095 1 -  4147112 A--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   199800 2 +   357190 I
e caeSp111.Scaffold582    360347 125 +   484378 I
e caeRem4.Crem_Contig15   342189 35 -  1794024 I

a score=4055.000000
s ce10.chrX              2847587 9 + 17718866 ACATACCTA
s cb4.chrX              17600303 9 - 21540570 tcttaccga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   342224 9 -  1794024 ACATACCTG
i caeRem4.Crem_Contig15 I 35 C 0
s caeSp111.Scaffold582    360472 9 +   484378 ACATACCGG
i caeSp111.Scaffold582  I 125 C 0
s caePb3.Scfld02_0       3515096 9 -  4147112 GCTTACCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   199800 2 +   357190 I

a score=248812.000000
s ce10.chrX              2847596 454 + 17718866 TTTTCAAATCTATTTCCAATAATATCTAGCCCGTGCGGTGTTCCAAACTGTCTCTCGTGATTCATAGGTCCCATCGAGCTCATCGGAGAATCATCGCACAAATCAGAATTTGAAGAATCATCCGAGTCCT-GAAATTACATTCGGCAATATAG----------AAAAAAAGACTAGTTAAATA------------TCGTACACAATCTGGGCTTGAAAGGTTAAGTTGGGCAAGTTGATGGGCAGATATTGTTGGCGTCAGTGGTTGCTCGTCAACGTTAGCTTTTCCACTAAGAATTGAACCTCTTGATCCACGTCGCGGAAACTCTTCTCCAGTTCCTA--AATAAAGAAA---ATTTGTTTTAATT-------AAATTTTTTGATTATTCAGACCTTCTAATGTTCCTTTTTTAACTTTATCGGCCAACAGTTCGTAGGTCGCAAAAATTGGGCTTTCAAAGTCTCGTCCAAGAACAGCCTAAAAA
s cb4.chrX              17600312 456 - 21540570 ttttcaaatctatTTCCCATTAGATCCAATCCCCTTGGTAACGTAAACTGC---TTATGATTT---GGTTCCAGTGAGCTCAATGGAGATTCATCGCACAGATCAGAGTTCGATGAGTCAtcggaatcctgaaaatcaaat--aacTATTTC--------------TATCc------ccaacgtttttttttttcacatacACAATCCGGACTCGACAAATTCAGCTGTGCCAGCTGATGAGCCGATATAGTTGGTGTTAGTGGTTGCTCATCGACGTTTGCCCGACCACTCAGAATTGATCCCCGCGAACCTCTTCTTGGATACTCTTCACCTGTACCTT--AAAACCATAAC-GTTTCGCCATTATtcatcttttattttttc--ttgatcaAACCTTCAAGAGACCCGATTTTGACCTTATCAGCCAACAATTCGTATGTTGCGAAAATCGGGCTTTCAAAGTTGCGTCCCAAGACGgcctgaaaa
i cb4.chrX              C 0 I 440
s caeRem4.Crem_Contig15   342233 445 -  1794024 TTCTCAAACCTATTCCCAAACACTTCTAGTCCTCTAGGCAGTCCAAACTGACGGTCATGATTT---GGTTCCATTGAACTGAGCGGAGAATCATCGCACAAATCAGAATTCGATGAGTCATCAGAATCCT-AAAATCAGA---AACTTTCTCa----------tgaaaacctaaaaacaaACA------------ACATACACAATCGGGACTTGAAAGATTCAATTGTGCAAGTTGGTGGGCAGATATCGTTGGTGTCAGTGGTTGTTCATCTACATTTGCTTTTCCACTCAATATTGAACCCCTAGAGCCCCTCCTTGGATACTCTTCCCCTGTACCTG--AAATTC--------TCTGTCATCATT--TCCATAAATGTCAT--CAGTTCAAACCTTCAAGAGACCCCTTCTTGACCTTATCAGCCAAAAGTTCGTATGTTGCAAAAATTGGGCTTTCAAAGTCGCGTCCCAGCACAGCCTGAAA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    360481 402 +   484378 TTTTCGAATCTGTTTCCAATAACATCCAATCCACGTGGGAGACCGAATTGCTTTTCATGATTCTGAGGTTCCATTGAACTGAGCGGAGAGTCGTCGCATAGATCAGAGTTAGAagaatcatcagaat-------------------------------------------------------------------------cacAGTCAGGACTAGAAAGGTTCAGTTGGGCAAGTTGATGAGCAGATATTGTCGGCGTAAGAGGTTGTTCATCCACATTAGCTTTTCCACTGAGAATTGAGCCTCTCGACCCCCTTCTCGGGTATTCTTCTCCGGTCCCTG--AATTATAT-----TCTTGTCACATTT--CCCATAAAT---AT--TGATTCAAACCTTCCAGAGTTCCCTTTTTCACCTTATCAGCCAACAACTCGTATGTCGCGAAAATCGGGCTTTCAAAGTCGCGTCCCACCACGGCCTGAAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3515105 452 -  4147112 TTTTCGAATCTGTTTCCAATAACATCCAATCCTCTTGGAAGTCCGAATTGTCGATCATGATTTGGTGGCTCCATGGAATTGAGAGGTGAATCATCGCACAAGTCAGAATTCGACGAATCATCAGAATCCT-gcaatcaatt--ttcttcccaG----------AGTCACTCTAAATCTAAA--------------ACATACACAGTCTGGGCTCGAAAGGTTGAGTTGGGCGAGTTGATGCGCTGATATCGTAGGTGTAAGAGGTTGTTCATCCACATTGACTTTCCCACTGAGAATTGAACCCCTTGACCCCCGTCTTGGGTATTCTTCTCCGGTTCCTG--GAAGTTATC----TTTTGTCAGCAAT--TCCATAAGTGTCAT--CAGTTCAAACCTTCAAGAGACCCCTTCTTAACCTTATCAGCCAACAATTCGTATGTTGCGAAAATCGGGCTTTCAAAGTCGCGTCCCAGCacagcctgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   199802 463 +   357190 TTTTCATGCCGGCTACCAGTGACATCAAGTCCTTGTGGGAGTCCAAATTGTCGATCATGGTTTACCGGGTGTAGAGAGCTGTTTGGTGAGTCGTCGCAAAGGTCGGAATTTGAAGAATCATCAGAAtcct-agaaaaaaaa--gataatttgGCATTTATTTTAGCAACGTTTGTAGAAAA--------------TCTTACGCAATCAGGGCTGGAAAGATTCAACTGAGCTAGCTGATGAGCCGAAATCGTTGGAGTTAGGGGTTCCTCGTCTATGACAGCCTTTCCACTTAAAATTGAGCCTCTTGATCCACGACGTGGAAATTCTTCTCCAGGACCTATCAAAGCGAAATTAGACGTGTGACACTT--TCGGTCACGATGAT--GTGT----ACCTTCCGATGAGCTTTTCTTGACTTTATCATACAGTAGCTCGTATGTGGCAAAAATCGGGCTTTCGAAATTACGTCCCATCACCGcctaaaa-
i caeJap4.Scaffold17990 I 2 C 0

a score=706.000000
s ce10.chrX              2848050 23 + 17718866 TTTAATAAT-----TTATGCATTTTTTT
s caeRem4.Crem_Contig15   342678 26 -  1794024 --AAGAatctattcttcttcttatcttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    360883 19 +   484378 --AAGCAGA-------ATTCTTATCTTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3515557 21 -  4147112 --aaatatg-----tcatTCTTATCTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   200265 21 +   357190 --tataagt-----ttttgaatattttt
i caeJap4.Scaffold17990 C 0 I 1117
e cb4.chrX              17600768 440 - 21540570 I

a score=4798.000000
s ce10.chrX              2848073 17 + 17718866 CAGTAATATTTTATATG
s caeRem4.Crem_Contig15   342704 17 -  1794024 TGACCGTCTTTTATGCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    360902 17 +   484378 TGACCATTCTTTATGTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3515578 17 -  4147112 TGACCATTCTTTATGCG
i caePb3.Scfld02_0      C 0 I 440
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I

a score=8177.000000
s ce10.chrX              2848090 142 + 17718866 GTAACTCAACTTGTTTCCTTTCCTTACTG--tataaaataat-------------------attataaatt------------------------------ttCTGTTCAATTCCAAATCACAATTTCATTTTTACAAAT-ATGTATGTGATAACGAATTCATCGTCTGGTTGGTAGATGCAAATAAACGTGTT
s caeRem4.Crem_Contig15   342721 173 -  1794024 ------TTTCTCGCATCTTTTCA-TCCTATTTATAGAATATCTTTGTGTTGTTTTGTGTTATTTTTAAACTTGTTGGCCTGATATGGTTTG----------TTCAATTCAATTCTAAAGCACACTGCAA----CACAGAATATGTGTTTGATAATGCATCAAGTGTCTGGTCGATGAAACCTGATAAACGGGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    360919 172 +   484378 ------TTTCTCGCATCTATTCATTTCTATATTTAGAATGCT---------TTTTGTGTTATTTCTGGGTATAT--GTTTGATTCGGTTTTAGTTTTGGTCTTCTATTCATGTTCAAAGCACATTGTTA----CATAGAA-ATTTGTTTGATAATACATTGATTGTCTGGTCGATGAAACCTGATAAACAGGTT
i caeSp111.Scaffold582  C 0 I 108
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I

a score=83.000000
s ce10.chrX              2848232 21 + 17718866 TTGGT--------ATTTTGTGTAT-TGATG
s caeRem4.Crem_Contig15   342894 30 -  1794024 CAAATCGGAAATGATTTTGTTTATGTGATG
i caeRem4.Crem_Contig15 C 0 I 86
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I
e caeSp111.Scaffold582    361091 108 +   484378 I

a score=0.000000
s ce10.chrX              2848253 786 + 17718866  
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I
e caeSp111.Scaffold582    361091 108 +   484378 I
e caeRem4.Crem_Contig15   342924  86 -  1794024 I

a score=154.000000
s ce10.chrX              2849039 6 + 17718866 GTTGCC
s caeRem4.Crem_Contig15   343010 6 -  1794024 GTAGAC
i caeRem4.Crem_Contig15 I 86 C 0
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I
e caeSp111.Scaffold582    361091 108 +   484378 I

a score=3234.000000
s ce10.chrX              2849045  98 + 17718866 ATTCTTTT-GAAAAGTTATTCAACCG-AAACGTTTTCATTAAAAGACG---GTGTGC-TTTTGGCAAATGAGAGACAAGCT-TTCCACA-------AGCTATG--AAATCTGCC-
s caeRem4.Crem_Contig15   343016 108 -  1794024 ATCTTTTTGTGAGAGTTATTCAACCGTAAAAGTATTCCGAGCAGAACGAATGTGTGCTTTTTATCAAATGGG----CTGCTCCTCAAAAAACACGTGTCTTTGAAAGATCGC---
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    361199  93 +   484378 attctttc----agattaTCCAACCATGAAGTTATTCGGAGCAGAACGAATGTGTGCTTTTTATCAAATGGA----CAGCT-TTCAATA-----------TTG--AGATCGCACG
i caeSp111.Scaffold582  I 108 C 0
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I
e cb4.chrX              17600768 440 - 21540570 I

a score=-119.000000
s ce10.chrX              2849143 16 + 17718866 --------------AAAACGCTTAACACCT
s cb4.chrX              17601208 16 - 21540570 --------------aaagtgcTTAAAATCT
i cb4.chrX              I 440 C 0
s caeRem4.Crem_Contig15   343127 16 -  1794024 --------------AACATATCGGAAGTGA
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    361292 30 +   484378 GAAAAGCTTGAAAAGAGATGTTGAAAACGG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3515595 440 -  4147112 I
e caeJap4.Scaffold17990   200286 1117 +   357190 I

a score=-5383.000000
s ce10.chrX              2849159 6 + 17718866 AGTTAG----
s cb4.chrX              17601224 2 - 21540570 CC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   343143 2 -  1794024 AT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    361322 1 +   484378 G---------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   201403 6 +   357190 ----agtatg
i caeJap4.Scaffold17990 I 1117 C 0
e caePb3.Scfld02_0       3515595 440 -  4147112 I

a score=201478.000000
s ce10.chrX              2849165 280 + 17718866 AACCCACATCAATAATTTGTTCTTCACTCCATTTCCCATGCTGCTGCATGAACATCATAATTGTAGGATTCAACTTTGTGGACTGCTGTCGAATTTCTATAGAACTTGATGGGATTGCTTCCAGGAGTTGCGCCGCTTGATTTTTTTGCACATCATCTCGGATGTGCATCCATCTGTGTTGAAGAACGTTTTGGATTGTGTATCTTTTGCCAGGGTTCAACACGAGCATTTTTCGTATAAAGTCCGCGCACTCTGGAAAAAAGAA----GATGAAGACGTCATT
s cb4.chrX              17601226 260 - 21540570 CACTCACATCAATAATTTGCTCTTCGGTCCACTTGCCATGCTGTTGCATGAACATCATAATCGTTGGATTCAGCTTACTGGGCGTTGGTCGGATG------------------GATGATTCAAGATTCTGCACC---TG---CTTCTTTACATCATTCCTAATGTGCATCCATCTATGTGCGAGAACGTTCTGGATTGTCATTCGTTTCGTGGGATTCAACACGAGCATTTTCCGAATGAAATCAGcacattctgaaaagaagggaaagaaCGATTACGTCATC
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   343145 274 -  1794024 AACTCACATCAATAATTTGCTCTTCACTCCATTTCCCATGTTGTTGCATAAACATCATAATCGTTGGGTTCAGTTTACTGGACTGCTGTCGGATGTCAATTGAACTTGCTGGTATTGCTTCCAGAAGTTGCACC---TGGGtttttttCGCGTCATTCCTAATATACATCCATCTGTgttgaagaacattttgaattgaatatcTCTTCCCAGGGTTTAACACAAGCATCTTCCGGATGAAATCAGCgcattctaaaaaaaatag-------gtCTACGTCATT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    361323 269 +   484378 AACTCACATCAATAATTTGCTCTTCGCTCCATTTCCCATGCTGTTGCATGAACATCATAATCGTTGGGTTCAACTTG---CACTGCTGTCGGATATCTATTGAACTGGAAGGTATTGGGTCCAATAGTTGCACC---TGATTCTTTGTGGTATCATTCCGTATATACATCCATCTGTGTTGAAGAACATTTTGTATTGAATATCTTTTGCCGGGGTTCAACACGAGCATCTTCCGGATGAAATCAGCacactctgaaaaaa---------gagacagcGTCATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3516035 276 -  4147112 AGCTCACATCAATAATTTGCTCTTCGCTCCATTTCCCATGCTGTTGCATGAACATCATGATCGTTGGGTTCAATTTGGATGACTGCTGTCGGATGTCTATTGAACTTGATGGAATTGCTTCCAGCAGTTGAACT---TGGTTCTTTTTCACATTATCCCGAATGTACATCCATCTGTGTTGAAGAACATTCTGAATTGAATATCGCTTTCCGGGGTTCAACACCAACATTTTCCGGATGAAATCAgcacattctgaaaaaaagcg-----gcGTTTGCGTCATT
i caePb3.Scfld02_0      I 440 C 0
s caeJap4.Scaffold17990   201409 269 +   357190 caCTTACGTCAACAATCTGCTCTTCGGACCACTTTCCGTGCTGCTGCATAAACATCATAATGGTGGGGTTGAGTTTGCTGACTTGCGGTCGGAT------TGAGCTTGATGGAATCGCTTCCAAAAGCTGTGCAGAATTACTATTATTCATATTATCGCCAATGTGCATCCATCTGTGTTGCATGAGACTTTGAATCGAGTATCTTTTCGATGGGTTCAGCACaagcatttttcgaataaagtCCGCGCATTCTTAAAGaaatct---------tttctttttt
i caeJap4.Scaffold17990 C 0 C 0

a score=-2035.000000
s ce10.chrX              2849445 24 + 17718866 --------------CTATGCGG-----AAACATTCTAGAGAGC---
s caeRem4.Crem_Contig15   343419 24 -  1794024 --------------CCATCCGG-----GGCCCTCTTCGAGAAA---
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    361592 29 +   484378 --------------CTTTCCGGCAAAAGACACTTTTCGTGAAA---
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3516311 26 -  4147112 --------------CTTTCCGG---AAGACACTTTTCGAGAAA---
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   201678 39 +   357190 ctgttcttttctttttttcccc-------ccatttttATAATGCAA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17601486 35 - 21540570 I

a score=204859.000000
s ce10.chrX              2849469 169 + 17718866 CGCTCACCAACAGAAACCCAATACGGAATCTTAACCAGGCCAGAGAGAACGGATCTCTTGAGTTTGTTCACTGAATCACTCGGGAAAGGAAATCCGCCGGCAACGAGAATGTATAGCAACACCCCCATGGACCAGATATCAGCTTTCATGCCGTCGTACGAGTTACCTG
s cb4.chrX              17601521 169 - 21540570 CACTCACCAACAGAAACCCAATACGGAATCTTAACGACGCCAGAGAGAACGGATCTCTTGAGATCGTTTACTGATTCACTGCCGAAAGGAAATCCGCCAGTCACGAGAATGTATAACAACACACCCATGGACCAGATATCAGCTTTCATGCCGTCGTACGAGTTACCTG
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig15   343450 169 -  1794024 CACATACCAACAGAAACCCAATACGGAATCTTAACGACGCCGGAGAGAACGGATCTCTTGAGTTTATTCACTGAATCACTCGGGAAAGGAAATCCACCAGTCACGAGAATGTATAACAACACCCCCATAGACCAGATATCAGCTTTCATGCCATCGTATGAGTTACCTG
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    361624 169 +   484378 GACATACCAACAGAAACCCAATACGGAATCTTAACGACGCCAGAAAGAACGGATCTCTTGAGTTTGTTCACTGAATCACTCGGGAAAGGAAATCCACCAGTCACGAGAATGTATAACAACACCCCCATAGACCAGATATCAGCTTTCATGCCATCGTACGAGTTACCTG
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3516340 169 -  4147112 GACATACCAACAGAAACCCAATACGGAATCTTAACGACGCCGGAGAGAACGGATCTCTTGAGTTTGTTCACTGAATCACTCGGGAAAGGAAATCCGCCAGTCACGAGAATGTATAACAACACCCCCATAGACCAGATATCAGCTTTCATGCCATCGTACGAGTTACCTG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   201717 169 +   357190 ATCTTACCAACAGAAACCCAATACGGAATTTTCACGACACCAGAGAGAACGGATATTTTAAGTTTGTTTATCGAATCGCTCGGGAAAGGGAATCCGCCAGTCACAAGAATGTATAACAACACACCCATGGACCAGATATCAGCTTTCATGCCATCATACGAGTTACCTT
i caeJap4.Scaffold17990 C 0 I 52

a score=-13404.000000
s ce10.chrX              2849638 42 + 17718866 CAACGTTGGCTTGGA---------ATAAGA----GAAAAAATGGCAAAGTTCTCA
s cb4.chrX              17601690 41 - 21540570 CAAAAG-gttatgcatttttttttcttgtttcctagA-------------AGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   343619 53 -  1794024 CAAAAATGTTACATACGATTGTTTATTGGATTCTGAATAAACAC--ATCTAAAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    361793 40 +   484378 CAAAA------TGGACAATatttcatgaga----aaaaaaaggg--aagtTG---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3516509 43 -  4147112 CAAAAG-----TGTACAATGTTTTAGGCTC----GAAAAAATGT--AACAAG-AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   201886 52 +   357190 I

a score=100320.000000
s ce10.chrX              2849680 100 + 17718866 CAAACCTAATAACAATTCTGGTGCGGCGTAGGGTGGTGATCCGCACCATGTGTTCAAAAGTTGATCGCCGGTTTGAAAATTTGAAAACCCAAAATCTGAA
s cb4.chrX              17601731 100 - 21540570 GGTACCTAATAACAATTCCGGTGCCGCATAGGGAGGTGAACCGCACCATGTGTTCAGCAGTTGATCgggagtttgaaaatttgaaaacccaaaatctgaa
i cb4.chrX              C 0 I 111
s caeRem4.Crem_Contig15   343672 100 -  1794024 CAAACCTAATAACAATTCAGGTGCAGCATATGGAGGAGAACCGCACCATGTATTCAACAGTTGATCGCCAGtttggaaattcgaaaacccaaaatctaaa
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    361833 100 +   484378 CACACCTAATAACAATTCAGGTGCTGCATAAGGCGGAGAGCCACACCACGTATTTAACAGTTGATCACCAGtttggaaatttgagaacccaaagtctgaa
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3516552 100 -  4147112 CAAACCTAATAACAATTCAGGTGCTGCATATGGCGGCGAGCCACACCACGTATTTAATAATTGATCACCGgtttggaaattggaaaacccaaaatctgaa
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   201938 100 +   357190 tatacCTAATAACAATTCTGGTGCTGCATAGGGAGGGGATCCGCACCAAGTGTTCAAAAGTTGGTCCTCTCCTTGGAGATTTGAGAAAccaaaatctgaa
i caeJap4.Scaffold17990 I 52 C 0

a score=233791.000000
s ce10.chrX              2849780 494 + 17718866  
s cb4.chrX              17601942 570 - 21540570  
i cb4.chrX              I 111 C 0
s caeRem4.Crem_Contig15   343773 480 -  1794024  
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    361938 426 +   484378  
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3516655 433 -  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   202038 499 +   357190  
i caeJap4.Scaffold17990 C 0 I 140

a score=-4472.000000
s ce10.chrX              2850274 5 + 17718866 CA---ATT
s cb4.chrX              17602512 3 - 21540570 AAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   344253 5 -  1794024 aaaat---
i caeRem4.Crem_Contig15 C 0 I 48
s caeSp111.Scaffold582    362364 2 +   484378 CA------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517088 2 -  4147112 CA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   202537 140 +   357190 I

a score=-6918.000000
s ce10.chrX              2850279 79 + 17718866 TGTATGTTTTGCTGCATTATTAAGAGTGAGCATTCCAGAAATGTACATGGAATGAGTATTTGAATTTTACAGTGCACAT--------
s cb4.chrX              17602515 20 - 21540570 --------------------------------------------ATCCTCAAGGATTATAAAGT-----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    362366 29 +   484378 --------------------------------------------AAATGTGATGAGAATTTGATTCTTG------GTAT--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517090 37 -  4147112 --------------------------------------------AAACCGAATGAATGTGTGATTTTTG------GTATTGAAAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   202537 140 +   357190 I
e caeRem4.Crem_Contig15   344258 48 -  1794024 I

a score=-93427.000000
s ce10.chrX              2850358 490 + 17718866 ----------AggaaattcaacaaaaaaagccagtgtggcatgctctctaaatattgtttcattaaactttgtgataaaatatagaaatttttttaagctgaaaatagctattaattaatttgaagctaccgaaaaagtgctcaaaaattgtctcatagttaaaaatttccggaaaaaaATTCTAAAA-TT---GTTCAAAACGATTGATTATGTTGGGCCAGGTATTCTGCACAAGTAC-----CTAATTTTTTTGAATTTATATACTCACTCAATAAAAAACTTTAAGATTAATAAAGCGGCACTGGATAAAAAAAAATTTATATCAGAATGAAGTTTCTTGAAGTCTAATGCAAATTGACAACTTTTCAAAAAATGGGATTTTTTCACAAGCTTAGTGTTTTTTATGAACTTTCAAGCATATCTTTGACTGTAACTGTAAAGTTTCAAAACCTTTCTTTTAACTTTTACAATGATATCTAAACGATTCATGACTTTTTGAACCTGA
s cb4.chrX              17602535 221 - 21540570 ------------------------------CTTTTGT--------------------AAT-----ACTTCTTCGTAAGgattgaaaa------------------------------------------------------------------tcagaatgaaGG--TCAAAAATAGTACACTGAACATCTGGGATTAAGAGGGAT-----------TTCAAGa---------------------acactttttct---------------------------ctatttggctgaaaaaactacagt-----aatctagattTGT--------------TCTCAATGA--ATcataaattaaaaatca---------------------------taa----ttttta------tgCAACCAA-----AAAAG-CAGCTG-------------------CTCTAATTCTATGATTTATGTTAAACA-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   344306 262 -  1794024 ----------agaaagttcA--ACAAAAGTCCGTTGT--------------------TATCAATGAACACTTGGAAAAGATTAGAAGATAAC----------------------GATTATCTTTGGTTCC----------------GATAGTCTTTGAATCACGGGTTCAAACTCAAGACAGAGAATA-CAGAACCCTCAAAACAC-----------GTTAAGA---------------------CCCATTGTTTT---------------------------ATATTTGAGTTTCAGAAC----------------GCATTTg---------------------------------gttaaaaattt---------------------------ttagtttcgtTTC------TTCAATCAC-----ACAAGACAgctgt------------tttttattttctctttttggttGATATGTAACAAA------------------TGT
i caeRem4.Crem_Contig15 I 48 C 0
s caeSp111.Scaffold582    362395 203 +   484378 ----------------------GAGAAAGACTAGAGA--------------------TTTAA---AACA------AAGGACAAAGAAAGTGC----------------------GTGGTT--------------------------------------------------ATCAGTGAAC--------------GCTCATAGCGATC-------AAGTTCAAAA---------------------CACACCA---------------------------------ATCAGATCAAACTAAC----------------CGTTTTGA--------AGACTACGGTAACTATTGCTTTTGATTAATTAT------------------------------------AATTTT------ATGAATCATG----AAAGGGCAGGTG-------------------TTCT-ATTTTATGGTTTATGTTAAAcaga------------------tga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517127 298 -  4147112 TAAAGATTCAAGAGAGATCA--AACAAAGTGCAGTGT--------------------TATCAGTGAACAC-TCATGAAGATTAAGTGAAGAC----------------------GTTCTTGTTGAAC--------------------------TTTCAATCACGAGTTTAATCAAGATACTCTTGAGA-TTACGGTTCTTAGAAACC-------TTgttcaagaaatttttgacaaagtCATAGTCACACT-----------------------------------TTAATTCAATacaat----------------ttatttga-----aataaagttttgtaataa--actttccaacaaaaaa------------------------------------aatgtcagcACGATTAATCACGTTTTGAATGACAGGTG-------------------TTCT-TTACTGTGGTTTATGTaaaacaga------------------tga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   202537 140 +   357190 I

a score=97583.000000
s ce10.chrX              2850848 117 + 17718866 -AAAATAAAACCGG----------ACAAACCTTAGTCTTAGCAATCTTGTGCCGCGCTATCCGAACTGTGGCAAAATTGCCTTTGCCAATTGCCCGACCAACATCATACAGGCCTATCTGAAACGAAT-
s cb4.chrX              17602756 103 - 21540570 ------------------------ACGAACCTTGGTCTTTGCAATCCTGTGCCGTGCTATCCGAACCGTCGCGAAATTCCCCTTTCCAATCGCACGACCAACATCATACAGACCTATCTGAAACATA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   344568 126 -  1794024 -AAATCCAAATTGGTAGCTCAAATACAAACCTTAGTCTTTGCAATCCTGTGCCGTGCTATCCGAACCGTCGCAAAGTTGCCCTTGCCAATCGCCCGGCCAACATCATATAGACCTATCTGAAACGAA--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    362598 116 +   484378 -aaatagaagt----------AAAACAAACCTTGGTCTTTGCAATCCTGTGCCGTGCTATTCGAACCGTCGCAAAATTCCCCTTTCCAATCGCCCGACCAACATCATATAGACCTATCTGAAACGAG--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517425 110 -  4147112 -aaatgt----------------ttcaaacctTGGTCTTTGCAATGCTGTGCCGTGCTATCCGAACTGTCGCAAAGTTCCCCTTGCCGATTGCCCTGCCAACATCATATAGACCTAtctgaaacgga--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   202677 113 +   357190 aaaatcaaA---------------TCAAACCTTGGTCTTAGCAATCTGATGCCTAGCTATCCGAACAGTGgcaaaatttccttttccaatCGCGCGACCAACATCATATAGACCTATCTGAAAATTA-T
i caeJap4.Scaffold17990 I 140 I 193

a score=34524.000000
s ce10.chrX              2850965 129 + 17718866 TGTTTTGTACATAATAATGAT-GGTACTGT---TTCAGTTGTTTTCCTTCTTTTCGCCTTC------TGTACAAAACA--CTTTCCACTATTCACTATATTAGCAATATTTGTTCTTGTGAATGAGAATCGTTCAACCAGG
s cb4.chrX              17602859 118 - 21540570 -ATAGAGTTCATGACTGAAAA-CAAACTGT---CAGT-TCGCtttttttCCTTCCGCC---------TG-TTTTCCCG-CGCTCCCTCTGTTGACTATATTAGCAATATTTGTT-TTGTGGAATGGAATCGTTCCA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   344694 114 -  1794024 -ATAGTGTTCATGACTGGAAGCCAAACTGT-----------CTTTCTCTCGTTTAGTC---------TA--CATAACA-TTTTCGCAGTGTTGACTATATTAGCAATATTTGTT-TTGTGAA--TGAATCGTTCAACTAGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    362714 134 +   484378 -AAAACGTTCATGACTGAAAT-CATactgtttctcttctctctcctcttcgtttttccttcccccttttttcataaca--TTCACCACTATTGACTATATTAGCAATATTTGTT-TTGTGAA--TGAATCGTTCGACCAGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517535 124 -  4147112 -aaaatgttcatgactGAAAG-AATACGGt---cattctctcttctcatttttctccc---------tcTTCATAACATTTTTCCCACTATTGACTATATTAGCAATATTTGTT-TTGTGAA--TGAATCGTTCAACTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   202790 193 +   357190 I

a score=18910.000000
s ce10.chrX              2851094 119 + 17718866 CGGACGCACGT-----TTTG------CTCTTAA--------CCCCCATATGC----------GG-----------AGCGCG-TGCAGACTGACGAACAAAAAACCAAATCCAATTAT-----AATCGACAACAATACATTTTGACTCATTCTCTC----CCATCATTAT
s cb4.chrX              17602977  95 - 21540570 ----------------CCCG------CTCTTAA---------CTCCATATGTGGTTTGT---AGCAGCACGGAGCGGCGCG-TGCAGAA----------------GAATTCAATTATTATAAAATGGA---TGATA---------------CTT-----TCATCATCAT
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig15   344808 115 -  1794024 CGGTCGC---------CCCG------CTCTTAA--------CCCCCATATGC-GCCTGT---AGCA---------GGCGCG-tgcaagagaa-----aaaaaaacgaatccAATTAT-----AATCGACCCCGATAT--TTCGACTCATCCTTT-----TCATCATTAT
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    362848 127 +   484378 CGGGCGC---------CCCG------CTCttaacccccccccccccataTGC-GGCCGTAGGAGGA---------GGCGCG-TGCagg---------agaaaaacgaatcCAATTAT-----AATCGACCCCGATAC--TTCgactcattcttttttcgtcattaTGAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517659 116 -  4147112 CGAGCGT---------CCCG------CTCTTAA--------CCCCCATATGC-GCCTGT---AGTA---------GGCGCG-Tgcaggaaag---aaaaaaaaacgaatccaATTAT-----AATCGACCCCGACAC--TTCGACTCATCCTT------TCATCATTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   202983 103 +   357190 cagacccATTTTTTCCTCCGCAAAACCTTTTAG----------CCCATGTTC-TA-------GGCG---------GGGGTGTTGtataaaga-----aaaaacaacaatttaatTAT-----AATCACCCCCA------TCCCCCT-----------------------
i caeJap4.Scaffold17990 I 193 C 0

a score=-5231.000000
s ce10.chrX              2851213 53 + 17718866 GAACATCACCACCGCAATTTGAAGGGTTGCTAGTCAGGC----------AAAATA----TCTATTCG-----
s caeRem4.Crem_Contig15   344926 54 -  1794024 GATCATCA-----GA----TGAGAGGAGGCTAGTCAGCCATACAAGGGAAGAAAT----TCACTTCA-----
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    362975 53 +   484378 GATCATCAACAACGA----TGA----TGGCTAGTCAGCC--CCCCGtatataaaa----tattttcg-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517775 56 -  4147112 GATCATCAACAGCGG----TAA-AAGGGGCTAGTCAGCC--TCagatatacattt----ttttttca-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   203086 40 +   357190 ------------------------------GAGtcatcg--tcaaaaaaaaaattcaagccATCTCACCATC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17603072 45 - 21540570 I

a score=57988.000000
s ce10.chrX              2851266 60 + 17718866 AATACAAGTTTGTCAAACTTTGATCATGCAAACAG--TCCTACTATCACTTCGAATTAAATC
s cb4.chrX              17603117 54 - 21540570 aatacAAGTTTGACAAACTCTGATCACACAAACAG--TGTCA-----AATTTGTGTAATA-C
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig15   344980 60 -  1794024 AATACAAGTTTGTCAAACTTTGATCATGCAAACAA--TCCTACTATCACTTCGAATTATATC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    363028 60 +   484378 aatacAAGTTTGACAAACTTTGATCAGGCAAACGG--TCCTACTATCACTTCGAATTATATC
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3517831 60 -  4147112 aatacaagTTTGGCAAACTTTGATCAGGCAAACAG--TCCTACTATCACTTCGAATTATGTC
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17990   203126 62 +   357190 AATACGAGTTTGTCAAACTTTGATCATGCAAACAGCCCCCTACTATCACTTCGAATTATATC
i caeJap4.Scaffold17990 C 0 C 0

a score=364.000000
s ce10.chrX              2851326 7 + 17718866 AATTGGC
s cb4.chrX              17603171 6 - 21540570 -ACTACC
i cb4.chrX              C 0 I 123
s caeRem4.Crem_Contig15   345040 6 -  1794024 -ATCACT
i caeRem4.Crem_Contig15 C 0 I 10
s caeJap4.Scaffold17990   203188 6 +   357190 -AACACT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3517891 14 -  4147112 I
e caeSp111.Scaffold582    363088 26 +   484378 I

a score=230.000000
s ce10.chrX              2851333 11 + 17718866 TACGTGAAATG
s caeRem4.Crem_Contig15   345056 11 -  1794024 TACACGGGTGG
i caeRem4.Crem_Contig15 I 10 I 1
s caePb3.Scfld02_0       3517905 11 -  4147112 TACAAAGGTAC
i caePb3.Scfld02_0      I 14 I 1
s caeJap4.Scaffold17990   203194 11 +   357190 TACGGACAATG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17603177 123 - 21540570 I
e caeSp111.Scaffold582    363088 26 +   484378 I

a score=374.000000
s ce10.chrX              2851344 17 + 17718866 -------ATTGTGTAAT-ATG--CTGT
s caeRem4.Crem_Contig15   345068 18 -  1794024 -------ATTGTGTAAC-ATT-TGTTT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    363114 18 +   484378 -------ATTATGTAAC-ATG-TTTCT
i caeSp111.Scaffold582  I 26 C 0
s caePb3.Scfld02_0       3517917 20 -  4147112 -------ATTGTGtaacaatgtttttt
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   203205 17 +   357190 ATATTGTATTGTGTTGT----------
i caeJap4.Scaffold17990 C 0 I 453
e cb4.chrX              17603177 123 - 21540570 I

a score=-5935.000000
s ce10.chrX              2851361  86 + 17718866 TTTACCACATTTTCCATCAAT-----------------------------------------------------------------GAAAGT----------------TCA-ATAACATCGGTT---------------------TAAGTTGTGTTTTGGCAGAATCGAAATTGCAACACTCTT-----CGTCA
s caeRem4.Crem_Contig15   345086 187 -  1794024 TTGACTACTCCTTTCATCGATACTGAATCA--A-AGCAGAAGGTtgttcaaagaaaaacaaactatgaaatgaaatcaaaa---cagAAAGTGCTCCAATTTACATG-CAACATAATAACCGTTGGGAATGGTGCAGtcattttatgtgtttttttttgataaatttatgttcacatcttttttcttcccgtCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    363132 174 +   484378 CTCACTACCTTCTCCATCGATATCGACTGA--ATAGTAGAACAC----AAAGCAGAAC---------AAGGGGAAACTCAATGCCGAAAAGT--CGGAATGCTCAAATCCACATGACAACAGTTGTGAGGAGCAGAGACGGTTAATGCGTTTTCTTCCGCGGGATTTATGTCCAGAGTCACTTTAT---CGTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3517937 186 -  4147112 cttactACCTTCTTCATCAGTATCGAGAAAGTATAGGAGAACACTTTGCCAGCAGAGAT--AttatgaagcaaaaaaaaaacgccgaGAAGT--TCAGATCCTCATG-CCAGTTGTCAACAGTCGAAATGTGAAATCGAAGTT-ATATGTTTTAACCCGACAAGTTTATGTCCAGAACTACTCCATG--CAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603177 123 - 21540570 I

a score=26342.000000
s ce10.chrX              2851447 204 + 17718866 AGGAAATTTTGAATT-----------------------------TTTAA------------------GAAAATAA-------------ACTTTTTAC---------------GTTTT---------ACGGTT--------TATCTGCACTTTGT------------------------------------TT--CCATAGTAATTCGAATGCAATGGA-GAAT---CTTAAATTTAGAAAATGTGGGAAAGATTTTTTATGCAAC-------TGCATAATCGCATCGGAAACCAACTAACATGAAAGGAAG-----------TAATGATTTTTTTTCCAAAAAAAAAACTACGCAG
s cb4.chrX              17603300 294 - 21540570 GGAAACTTCTGAATGTCAGACTTTCTTTCCCTCTCGCGGTAAAGATCAAGAAGAGAAAGACAAAAGGAAAACTAATCGACTTTTTGCTgctctttcc---------------ttttt---------ctaatGAGAT----CTACAACATCTGAG------------------------AGAGGA-GAATTGTGCCaataaaaatgctaaaatgCACGAGGAGAGGGTGTGTGTGTC-AGAATAGCCAGTAAATTTTCTATGCAACAAGTAAGTACATAATCGCATCGGAAGCCGAGTTCCTTGGAAGAAGA--GGaggcagaaaaaaattt------cgaggcGAAAATCACGCAG
i cb4.chrX              I 123 I 26
s caeRem4.Crem_Contig15   345273 272 -  1794024 TAAAATTGCAGGATTgcatgtgtttttttttgttcttgcAAGTGCTCAC------------------AAAATTAATCGAGTTGCtctttctttcgtt---------------ttttttccgtCCACTTAATGAGAT----CCACAACATCTTAG------------------------GGAA--------TTGgcaataaaaatgcaaaagcaCGCGA-AAGAGAGCGTGTGCTTCTAGAATAGGCAGTAAATTTTCTATGCAACAAGTAAGTACATAATCGCATCGGAAGCCGAGTTTCTTAGGAGGAAATGGGAggc---aaaaaatt-----------gacaaaatcaCGCAG
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    363306 283 +   484378 --------TGGAGAA--TTGCGGCTATTGTATAACGT-----------T------------------GAATGTAGCTGTCTTTCTGTTGCACGTATCCGAAAAATTAATCGAgttgc---------tcttttttttttg-cttcctcACTTAATGAGATCTAAAACATCTTACGAAACGGAAGG-GAA--TTAGCAATAAAAATGCTGAAGCGCACGA-GAAAGAGCAAGTGCTCACAGAATGGGCAGTAAATTTTCAATGCAACGAGTAAGTACATAATCGCATCGGAAGCCGAGTTTCTTGAGAGAAAC------GC---GAAAAACT-----------GACAGAATCACGCAG
i caeSp111.Scaffold582  C 0 I 39
s caePb3.Scfld02_0       3518123 257 -  4147112 --------CCGaatg--aagctttttttgatgCACGTGT------CCAG------------------GAAATTAATCGAGTTGCTCTCGCAATTTTC---------------GCTGC---------TCACTTAATGAGATCTACAACATCTTAGGAAAT-------------------GGAGGGAGAA--TTGGCAATAAAAATGCTAAAGCGCACGA-GAATGAGCGTGTGCTCACAGAATGGGCACTAAATTTTCTATGCAACAAGTAAGTACATAATCGCATCGGAAGCCGAGTTTCTTGGGAGAAAc-----ggc---aaaaaatg-----------gaagaaatcaCGCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-547.000000
s ce10.chrX              2851651 2 + 17718866 GT-
s caeRem4.Crem_Contig15   345557 2 -  1794024 GT-
i caeRem4.Crem_Contig15 I 12 C 0
s caePb3.Scfld02_0       3518380 2 -  4147112 -TC
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603594 26 - 21540570 I
e caeSp111.Scaffold582    363589 39 +   484378 I

a score=-247.000000
s ce10.chrX              2851653 16 + 17718866 TTTTTTATGGAAC--ATT
s caeRem4.Crem_Contig15   345559 18 -  1794024 TTAATCGCAAAAACGATT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3518382 21 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603594 26 - 21540570 I
e caeSp111.Scaffold582    363589 39 +   484378 I

a score=590.000000
s ce10.chrX              2851669 18 + 17718866 GTTttaaaggtggagtag
s cb4.chrX              17603620 18 - 21540570 GTTTTAATCGCGGCAAAG
i cb4.chrX              I 26 C 0
e caePb3.Scfld02_0       3518382 21 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I
e caeSp111.Scaffold582    363589 39 +   484378 I
e caeRem4.Crem_Contig15   345577  0 -  1794024 C

a score=1654.000000
s ce10.chrX              2851687 19 + 17718866 ------------cgccagtggagaatttgtt
s cb4.chrX              17603638 31 - 21540570 CGATTGATCACTCAGGCATAAATAATCGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   345577 26 -  1794024 -----GATCACTTGAGCGTGAATAATCGCAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    363628 19 +   484378 ------------CGGGCGTGAATAATCTATT
i caeSp111.Scaffold582  I 39 I 2
e caePb3.Scfld02_0       3518382 21 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-12427.000000
s ce10.chrX              2851706 60 + 17718866 aaaaacctttttttatcgacaac-ttcca----aaa---AGTGGCGAAAACTgggattttttccaatt
s cb4.chrX              17603669 61 - 21540570 AAGAAACG------TTTGGCATC-TGTTTCCTCAAACTAAGCGACGGAAAATTAAATTGCCACCAACT
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig15   345603 63 -  1794024 AAGAAACTAAAAACCTTGTCAAC-CCTTT----AATTTAGTATACCGAAAATCAAATTGACGGAAAGG
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    363649 37 +   484378 -AGGAACTAAAGACCTCAAGAGT-TGCTA----AAT--------CGGGAAA-----------------
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3518403 42 -  4147112 -AAAAACGATTGATCACCAAAGCGTGAAT----AAT--------CGGTTAA--AAGT-----------
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-1348.000000
s ce10.chrX              2851766 25 + 17718866 ---------ttcaaaaaatcataaaattcaactt
s caeRem4.Crem_Contig15   345670 29 -  1794024 CAAATAACTTGTGAAATTTAATTAGagcc-----
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    363686 24 +   484378 ---------CTTGAGATCTAATTATAGGCGACT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3518445 24 -  4147112 ---------CTCAAAATCTCAGAAAGTGCCAAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603730 32 - 21540570 I

a score=-16485.000000
s ce10.chrX              2851791 59 + 17718866 -----ttttaaaaatgtttttaactgttatttgattactgtggtgtggtgagatagcaattt--tt
s cb4.chrX              17603762 36 - 21540570 -----TCTCAAAAA-----------------TGCTCTCTTCTgctt--ctaaaact--tttt----
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig15   345699 53 -  1794024 -----ttctagaaacttttt--ATATGTAGTTACTTCATCCTATTT--TAGGCACCAAATTT----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    363710 43 +   484378 ----ACATTAGAAATT---------------CAATCAACGCtcatt--tgagaaagaaattttt--
i caeSp111.Scaffold582  C 0 I 51
s caePb3.Scfld02_0       3518469 41 -  4147112 TTGAGAATACGAAATT---------------TGATTGTAGTGCGCT----AGAAttcaat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-1559.000000
s ce10.chrX              2851850 32 + 17718866 taaa----ttcacaactgacgctactccacttttaa-
s cb4.chrX              17603798 20 - 21540570 --------ttcccaa--------acttcaatttcaa-
i cb4.chrX              C 0 I 113
s caeRem4.Crem_Contig15   345752 15 -  1794024 --------TCCACAA--------ACTTCAAA------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3518510 29 -  4147112 tagaatttttttata--------acttcGACTTCcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I
e caeSp111.Scaffold582    363753 51 +   484378 I

a score=-2819.000000
s ce10.chrX              2851882 30 + 17718866 TCTATTTTATTTTTT---------TAACTTCTT--GCTAAA
s caeRem4.Crem_Contig15   345767  9 -  1794024 ------------------------TATCTTCGG--------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3518539 33 -  4147112 --ctttttatattttcccaaaacctattttctcaa------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603818 113 - 21540570 I
e caeSp111.Scaffold582    363753 51 +   484378 I

a score=6532.000000
s ce10.chrX              2851912 33 + 17718866 AACGTTGCATGACGTAAAGCGGTCA-AAAATGCT
s caeRem4.Crem_Contig15   345776 31 -  1794024 ---ATTGAATGACGTATACAGATCGAAAAACtct
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    363804 34 +   484378 AGGATCTCATGACGTGTACagatcgagaaaaaat
i caeSp111.Scaffold582  I 51 C 0
s caePb3.Scfld02_0       3518579 33 -  4147112 agGATTGTGTGACGTATACAGATCG-GAAACtct
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17603818 113 - 21540570 I

a score=34618.000000
s ce10.chrX              2851945 148 + 17718866 ---GTGCAAAAATTTGTCGGACGA----AAAAAAAAG-----AAAAAC-------TCTCAAGCATCCATCTTTATGTTCTGCCGTTAAACTCTCGGCGCTCGTTGATTTATTGCCGACTGTCGAAC------------GGATGCGTGGGAATTTGCTTGGGCATTAAACGATAAAATCA
s cb4.chrX              17603931 108 - 21540570 ---gcgaaaaaattcct-----gaacggacggaaaagagcaaaaaaacgAACTCTTCTCAAGCATCCC-ACAAGTGTCCCGCCG-------------GCT---TGATTTATCG---------GGAC------------GTATCCCCAGAAAAGA-------------------------
i cb4.chrX              I 113 C 0
s caeRem4.Crem_Contig15   345809 128 -  1794024 ---gcgaaaaaattcct-----ga----acggaaaag-----aaaaac-------tctcAAGCATCCT----AATGTCTTGGCGTTAAACTCGCGGCGCTTGCTGATTTATTGCCCATCATCCGAC------------AGATGCGTGGGTATGGGA-AGTGCAttaaac----------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    363838 152 +   484378 gctGGGAAGAAATTCCT-----GA----ACGGAAACG-----AAAAAC-------TCTCAAGCATCCATCCCAATGTCCTGGCATTAAACTTGCGGCGCTTCCTGATTTATTGCCGATGGTCGGAAGCGCGGACGGACGGATGCGTGGGAATGAGA-CAGATAATaaacaataa-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3518612 145 -  4147112 ttgcgaaaaaaattcct-----ga----acgGAAGCG-----AAAAAC-------TCTCAAGCATCCATCCTAATGTTCTGACGTTAAACTAGCGGCGCTGGCTGATTTATTGCCATTGGTCGGAA------------GAATGCGTGGGAATAGGA-TATACATTAAACGATGAGAACG
i caePb3.Scfld02_0      C 0 I 174
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-12596.000000
s ce10.chrX              2852093 90 + 17718866 GAAAAAGACTGTTCTATGGCGGGAAACAAAAACGACA--AAACGCACCTTCTCACGGTAGATTGCGCAATGTTTTTACATACATATTT-----------------------TATG----------
s cb4.chrX              17604039 62 - 21540570 ------------TTTCTAATCTAAGATGAAACGGGTT--CCCATGAAAGTCTCAA---AAGTGT-------TCTT------TAAATTT-----------------------TACA----------
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig15   345937 77 -  1794024 ------cacttttttgtaaaaaaaaagaaaatcgaataGTAGATGTAAATGTTAT---AGgttttggaatatttt------catgttt-----------------------caaa----------
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    363990 95 +   484378 -----------------gaaaagagaaacagtGAAGA--GCATTCCTATTTTCAC---ACGTTT--CAACATGTT------CGACTTTGTGTTCACCCTGGGAAATGGGAATACATGATCCCCAG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3518757 174 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-1644.000000
s ce10.chrX              2852183 42 + 17718866 TAAATTGTGTGACCTTAAATGAATGGGGAGAAAAAATAAAGT----------
s caeRem4.Crem_Contig15   346016 51 -  1794024 ttGACTTT-CATCTTTCGCGTTAGAAAGGAAAGGTATAAACATAGGAGAATT
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    364085 42 +   484378 TGGACTTTGtgtctatcaaaaaataatgaagagttctcaaaa----------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3518757 174 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17604101 43 - 21540570 I

a score=-1426.000000
s ce10.chrX              2852225 32 + 17718866 GCAATC---GCACGCCGAACAAGTCAATTAACTAG
s cb4.chrX              17604144 35 - 21540570 GCAATCCCATTAAACCAAATGAGTCATCTAATTAG
i cb4.chrX              I 43 I 65
s caeRem4.Crem_Contig15   346067 27 -  1794024 GCAATC-------ACAAGGTGAG-CACTCAATAAA
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    364127 17 +   484378 acaatc----tGCGCAGAAAG--------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3518757 174 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I

a score=-2171.000000
s ce10.chrX              2852257 34 + 17718866 ------------GCACCATTCAATTAAGTGTGGGTGTTTTGTGTGT
s caeRem4.Crem_Contig15   346098 41 -  1794024 GTCGTTAAAAAGTAATTACCTAATTAAATTGGTGA-----ACGAGT
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    364144 24 +   484378 -----------GAGCGTACCCAATTAACTGGTCGA-----------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3518757 174 -  4147112 I
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17604179 65 - 21540570 I

a score=-892.000000
s ce10.chrX              2852291 10 + 17718866 GTGGGGAAG-G
s caeRem4.Crem_Contig15   346139 10 -  1794024 -AAAGTGACAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    364168 10 +   484378 ACGAGTAAA-G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3518931 10 -  4147112 ACAAGTAGA-G
i caePb3.Scfld02_0      I 174 C 0
e caeJap4.Scaffold17990   203222 453 +   357190 I
e cb4.chrX              17604179 65 - 21540570 I

a score=272497.000000
s ce10.chrX              2852301 615 + 17718866  
s cb4.chrX              17604244 691 - 21540570  
i cb4.chrX              I 65 C 0
s caeRem4.Crem_Contig15   346149 554 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    364178 594 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3518941 548 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   203675 475 +   357190  
i caeJap4.Scaffold17990 I 453 I 1829

a score=2671.000000
s ce10.chrX              2852916 5 + 17718866 GCCTT
s cb4.chrX              17604935 5 - 21540570 gcatt
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   346703 5 -  1794024 GCCTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    364772 5 +   484378 GCAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3519489 5 -  4147112 GCCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   204150 1829 +   357190 I

a score=3193.000000
s ce10.chrX              2852921 31 + 17718866 GAGGAGCTCAACCGGGCGGCGGAGATCGCAC
s caeRem4.Crem_Contig15   346708 25 -  1794024 GAGGAGCCCGCCGGTGCGGTTGGGT------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    364777 22 +   484378 GAGGAGC---CCGGTGCATTTGAGT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3519494 22 -  4147112 GAGGAGC---CTGGTGCATTCGAGT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e cb4.chrX              17604940 33 - 21540570 I

a score=11299.000000
s ce10.chrX              2852952 22 + 17718866 TGCTTGAGCAAGTTCAAGAAAA
s cb4.chrX              17604973 22 - 21540570 TGCGTGAgcaagttcaaaaaaa
i cb4.chrX              I 33 I 413
s caeRem4.Crem_Contig15   346733 22 -  1794024 TGCGTGCgtaagttcaaaaaag
i caeRem4.Crem_Contig15 C 0 I 563
s caeSp111.Scaffold582    364799 22 +   484378 TGCGTATGTGAGTTCGAAAAAA
i caeSp111.Scaffold582  C 0 I 534
s caePb3.Scfld02_0       3519516 19 -  4147112 TTCGTGtgtaagttcaaaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   204150 1829 +   357190 I

a score=0.000000
s ce10.chrX              2852974 1 + 17718866 T
e caePb3.Scfld02_0       3519535 0 -  4147112 C
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e cb4.chrX              17604995 413 - 21540570 I
e caeSp111.Scaffold582    364821 534 +   484378 I
e caeRem4.Crem_Contig15   346755 563 -  1794024 I

a score=846.000000
s ce10.chrX              2852975 40 + 17718866 AAACTTTTAAACCACCAACA-----AATTAATTCACGTAGTTTTT
s caePb3.Scfld02_0       3519535 45 -  4147112 aaacttctcacTTACCTCCATGGTTCATTGGTTCACGAGAGTTTT
i caePb3.Scfld02_0      C 0 I 527
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e cb4.chrX              17604995 413 - 21540570 I
e caeSp111.Scaffold582    364821 534 +   484378 I
e caeRem4.Crem_Contig15   346755 563 -  1794024 I

a score=0.000000
s ce10.chrX              2853015 806 + 17718866  
e caePb3.Scfld02_0       3519580 527 -  4147112 I
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e cb4.chrX              17604995 413 - 21540570 I
e caeSp111.Scaffold582    364821 534 +   484378 I
e caeRem4.Crem_Contig15   346755 563 -  1794024 I

a score=773.000000
s ce10.chrX              2853821 101 + 17718866 CCCTTTTTAACATAATCGGGAAGTGAAA--CAAAAACAAACAAAAAATTGAAAAAAAAATGTATCAAATGAAAGTGTGGTAGTTTTGATGAAG-----ATCTGTGATG
s cb4.chrX              17605408 106 - 21540570 CCTTATCtaataaaat--gaaattgaagagCATGGAAGAGCAAAGGGGAGCAAAGGGAAGGCGTGGTAGGAGCATCGGCTATTTCCGAAAAAGGAAGCAGCTGTGGTG
i cb4.chrX              I 413 C 0
e caePb3.Scfld02_0       3519580 527 -  4147112 I
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e caeSp111.Scaffold582    364821 534 +   484378 I
e caeRem4.Crem_Contig15   346755 563 -  1794024 I

a score=273.000000
s ce10.chrX              2853922 1 + 17718866 A
s caeRem4.Crem_Contig15   347318 1 -  1794024 A
i caeRem4.Crem_Contig15 I 563 C 0
s caeSp111.Scaffold582    365355 1 +   484378 a
i caeSp111.Scaffold582  I 534 C 0
e caePb3.Scfld02_0       3519580 527 -  4147112 I
e caeJap4.Scaffold17990   204150 1829 +   357190 I
e cb4.chrX              17605514 0 - 21540570 C

a score=1322.000000
s ce10.chrX              2853923 10 + 17718866 TGAAGAAGTT
s cb4.chrX              17605514  5 - 21540570 -----ACGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   347319 10 -  1794024 TGATGACGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    365356 10 +   484378 tgaatttatt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520107 10 -  4147112 TGATGACGTC
i caePb3.Scfld02_0      I 527 C 0
e caeJap4.Scaffold17990   204150 1829 +   357190 I

a score=36454.000000
s ce10.chrX              2853933 59 + 17718866 TCACTCGCCTTTGTAGAGTATCCACATCCGCGGAGTCTCCACGTATGCTGTAATTAAAA
s cb4.chrX              17605519 59 - 21540570 TCACTCGCCTTTGAAGAGCATCCACAAGCGAGGAGACTCGATGTACGCTggaacaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   347329 56 -  1794024 TCACTCGCCTTTGAAAAACATCCATGAGCTAGCAGAGTCCACGAATCCtgcaatta---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    365366 56 +   484378 ttattcccCTTTGTATAACATCCAAGTGCGAGGAGATTCGACGTAAGCTAAAatga---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520117 56 -  4147112 TTAGTCTCCTTTGAAAAGCATCCACGTCCGAGGAGACTCGATATATGCTGCAATTA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   205979 59 +   357190 TTATTCGCCTTTGTAGAGAATCCACATTTGAGGCGGCTCGACGTAGGCTGAAATGAAGA
i caeJap4.Scaffold17990 I 1829 I 288

a score=-20803.000000
s ce10.chrX              2853992  36 + 17718866 ------TTCAATTTTAAAA------------------------------------------------------------ATTCTGTCATTC--------------------------------GTTTT-----------TCAGTG
s cb4.chrX              17605578 145 - 21540570 ttgtttttcattttaaaaatcactACACATCTCTCCTCACTGGATTCCAAAAggtttggtcagaaattgcgTCCCAGCGGTTTTGTCCGGTTTAAAATTATACGGGACGCGATTTCTTACCAAGCTTTTTGAAACCCTGTCGCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   347385  38 -  1794024 ----ttttcagtttaaaaa------------------------------------------------------------gtcttgtt------------------------------------gttttttga-------ttcagC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    365422  30 +   484378 ------tatatttttcaaa------------------------------------------------------------c-------------------------------------------g---ttCACTACT---ACATAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520173  33 -  4147112 ------CAGATTTCCAACA------------------------------------------------------------G-------------------------------------------GGTTTTTGATTCC---TCAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   206038 288 +   357190 I

a score=31911.000000
s ce10.chrX              2854028 65 + 17718866 ATACCTGTCGGCTCATCTGCTGCCAGGTAGCCTCCGTGCTCTTCATACACGTGATGTTTCATCTC
s cb4.chrX              17605723 61 - 21540570 TTACAAATTGAATCTTTTGATGCTAGATATCC----TGTGTTTTGAAGACGTGGCCACTCATATC
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig15   347423 65 -  1794024 TAACCAATAGGTTCATCAACAGCAAGATATTCTCCATGACTTTCGAAAACGTGATGTTTGATGTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    365452 65 +   484378 TTACCAATTGGTTCATCCACAGCAAGATAACCTCCATGAACAGTATATACGTGGTGTTTTATCTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520206 65 -  4147112 TTACCGATTGGCTCATCAACGGCCATGTAGCCACCGTGCTCCATATAAACGTGATGTCGCATTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   206326 65 +   357190 ATACCTGACGGCTCATCAGCTGCCAAGTATCCTCCGTGCTCCTCATACACGTGATGCTTCAACTC
i caeJap4.Scaffold17990 I 288 C 0

a score=5908.000000
s ce10.chrX              2854093 22 + 17718866 GGGGTATTCCGCGTGACGTTCG
s caeRem4.Crem_Contig15   347488 22 -  1794024 AGAGTACTCACAAGCTCGTTCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    365517 22 +   484378 AGCATCTTCGGCAAAACGTTCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520271 22 -  4147112 GTCGTATTCAGCGAAACGTTCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   206391 22 +   357190 CGGGTATTCAGCATATCGCTCG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17605784 22 - 21540570 I

a score=44521.000000
s ce10.chrX              2854115 189 + 17718866 TGACAAATCGCGCAAACATATCCATGCTCATCTCTCTTGTGTTCCTGGAATCAATATAAT---TAAA--AGTTCATATAAG-GGTATTC----ATGAC--AAAAGGGCAGGCACCAGGATATA------ATCTGATCTCATTGTGAG-----TCCTCGATTTC----ATCGCCGTAATAACATTGATTTTT-----------CTTTTTTGTTTTTCTTCT----TTTTTAC--
s cb4.chrX              17605806 177 - 21540570 TGGCAAATTGGGCAGACGTAACCGTGCTCATTGAGATTATGCTCCTggaatgaaaaaa-----caaa--agttca-----g-TGACTTT----AATGA--ATGTCATGGGATGGAAAGA------------ATAATCTCATTGTGA-----CTCCCCGACTTCCCCAATTCGCGTAATAACATTGATTTAT-----------ATTGTTA-------TTCTCTACTTTTTGT--
i cb4.chrX              I 22 I 491
s caeRem4.Crem_Contig15   347510 193 -  1794024 TGACAAATCGGGCAGATATATCCCTGCTCATTATTTTTGTGatcctgaaaatcaaaaatgaatcaaa--agttCATTAGGA-TGAATTCGTTGAAGAA--AGATCATGAAACGAAAAGCTTTA------CTCTATTCTTTTTGTGAA-GTCTTCTTTGATTTC----AATGTCGTAATAACATTGATTTAT-----------CTTGTTA-------TTCT----GTTTTAA--
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    365539 183 +   484378 TCACACACTGGGCACACATAGCCGTGCTCATTCTTCAtgtgattctgaaaa------------caaa--agttcaTTTAGACTGATTCA----TAGAAAGATGTGACAAAGTGCAATGTCATA------ATCTGATCTTATTGTGAA-CATTCTCTTGATTCT----AACAGCGTAATAACATTGATTTAT-----------CTTGTTA----TTCTTCT----GTTTTAT--
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3520293 178 -  4147112 TGGCAAATTGAACAGACACATCCATGATCATTCTTCATGTGTTCCTAGAAG------------CGAT--AGTTCATTGAAA-TGGTTTC----TAGAC--ATATTATTGAGGGCAGTGACATA------ATCTGATAttattgtcaatttttctgttgattct----ATTGGCGTAATAACATTGATTTAT-----------CTtgtta-------ttat----atttttc--
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   206413 180 +   357190 TGACAAATCGCACACACGTAGCCGTGCTCGGCCTTTTTGTGCTCCTGAAAG------------TGATCCAGTTCA----AA-CAGATTA----ATGAA--ATAACAGGAAAAATGACATCTCATATAATATATAATCTCATTTT---------------TCTT----ATTTGCCCAATAATTTGGACTTGCTTCGCCCTACACTTgtta-------ttct----gttttttta
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              2854304 2 + 17718866 AT
e caePb3.Scfld02_0       3520471 1 -  4147112 I
e caeJap4.Scaffold17990   206593 0 +   357190 C
e cb4.chrX              17605983 491 - 21540570 I
e caeSp111.Scaffold582    365722 1 +   484378 I
e caeRem4.Crem_Contig15   347703 31 -  1794024 I

a score=-4435.000000
s ce10.chrX              2854306 44 + 17718866 GTATGTTAATCCTATCTCAGAGCACCCCTTCAAAAAAAAACAAA
s caeSp111.Scaffold582    365723 33 +   484378 -----CTAATCCGTGACGATAACGTTTc-ccgaaaa-----tta
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3520472 32 -  4147112 -----ctAATCCGTGACGATAATATCT--CCGAAGA-----ATA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   206593 23 +   357190 --------atccTTCATTAAGTCCTTCCCTT-------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17605983 491 - 21540570 I
e caeRem4.Crem_Contig15   347703 31 -  1794024 I

a score=-15830.000000
s ce10.chrX              2854350 72 + 17718866 TGTCATTTTTACC------ATGTGATT-TTTTATTATGAC-AAATGCTG-------------------ACTTGAAGTTAATGTGTGAAA--------GAATAAGCTC---
s caeRem4.Crem_Contig15   347734 93 -  1794024 TGTCGTCTATCAC------ATGTGATTATCTTATTATTACATAATCATATTCAGGTGGTCAGGCGTGTTCATGAGCGCAATCCcggaaa--------aagggaaata---
i caeRem4.Crem_Contig15 I 31 I 4
s caeSp111.Scaffold582    365756 81 +   484378 ttttgtttcctcCTATTCTATATCATTATCTT-TTATGACTAAATAATGAT-----------------TTCTAGGAGAATAGGGAGAAG--------GGGGGATATC---
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0       3520504 66 -  4147112 CGTCGTTTTTGCC------ATGTGATTATTTTATTATCAGAAAATCATTATAAAG-------------TTCTGATCACAT----------------------GTATC---
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17990   206616 45 +   357190 -----------------------------------------------------------------TCTTTTTGGCTGCATAAAGAAAAATGATCGGCAAGGGACATACAT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17605983 491 - 21540570 I

a score=177484.000000
s ce10.chrX              2854422 323 + 17718866 ACCTCCATAGCAGTGTATCGGTTTGCACGAAAGTCGCAAACTTTGCATTCAAACTTTATAATTCCCGTATGCATTCTCTCATG--GGTCATCAC-----------------------------T---------------------------------------GCAACTTCACTAATGAATATCTCCTCGCAAAAATGACATTGGAACGTTTTTGTGAACACATGGGACATCTTCTTGTGCTTCCGAAGTTTACGCGGTGTAAGGAACTTCATGTTACAGAAC-----GAACAGCGG---------AAACCAGAGTTCGCTCCACGATGGAACTTCTTTCGGTGATTTAGGAGACGATTGTCGGTGCAAAGATTTCTGATCGGAGTACATTCGAAGCAAACATAAGT
s cb4.chrX              17606474 367 - 21540570 ACCTCCATGTCACTATATCTATTAGCACGATAATCGCAGATTTGACATTCGAACTTGATAATTCCCGTGTGAATTCTCTCGTG---GGTATAacgctgaaaaatgttc---------------attagtgagaaaaaaatgaaattttt--------ctcacCGCAGTTTCATTAATGAAAAGCTCATCGCAAAAATGACACTGATATGTGGTTGTGAAGACATGAGACATTTTCATATGCTTCCGAAGTTTTCGTGGTGTCAAAAATCGTTTTAGGCATTCT-----TTGCAGGAG---------AATCCTGAATTCGCACCACGATGGAATTTGCTACGATGTTTGAAGAGGCGTTGTTCGGTGACCATGTTTTTAACAGGAGTGCAGTCAAAACAGACataggt
i cb4.chrX              I 491 C 0
s caeRem4.Crem_Contig15   347831 360 -  1794024 ACCTCCATAGTGGTAAATCGGTTGGCTCGGAAGTTGCATACTTTACACTCAAATTTGATTATTCCAGTGTGAACTCGTTCATGTTTGGGATTAC-CTGAAACAATTTC---------------A----------------GGTGTTTTTGTGTACAGTTTACCGCAACTTCACTAATGAAGATCTCTTCACAAAAATGACAAGCAAAAGTTTTGGTGAACACGTGAGACATTTTT-TGTGCTTGCGAAGCTTTCTTGGTGTCAAAAACTTT-----GCA---------TTGCAGAAGGAACAACAAAATCCAGAACTTGCGCCTCGATGAAACTTTCTTCGATGGCTGACAAGTCGTTGATAAGTGCAAAGATTTCTTATTGGAGTGCATTCAAAGCAAACATGTGC
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    365846 369 +   484378 ACTTCCAGTTCAATGAATCTGTTACAGGTGAAGTCGCACACTTTGCATTCAAACTTGATGATACCGGTGTGAATTCGTTCATG--CTTCATAAc-ct--aaaatgttt---------------tttattctcagaa----aacattAATATAATTATCTCACATGATTCTCACTTATGAAAAACTCATCACAGAAATGACATTGAACATTGTTCTCGAAGACGTGAGATAGTTTATTGTGTCTTCGAAGTTTTCGTGGCGTCAAGAA-----GCAGATATTGCACTTTTTACATCGG---------AATCCAGAATTCGCTCCACGATGAAACTTTGCCTGATGGCGGGTTAGACGTGGTTCTGTACACATATTTCTGATTGGAGTACATTGAAAGCATACATAggt
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3520587 379 -  4147112 ACCTCCATAGTAACGTATCTGTTCGCTCGAAAGTCACAGACTTTGcattcaaatttgattattcCGGTATGAATTCTCTCATG--TGTCATAAC-CTGAAAAACGTTTGGATTATTCATATGGTTTGTTGTCTGA--------GCTAAT---AATAACTCACCGCAACTTCACTAATGAAGTATTCCTCACAAAAGTGACATTGGATGTTTTTAGTGAACACATGATTTATTTTCTTATGCCTTCGAAGCTTGCGAGGCGTCAAGAACTTCTGCTGACATTGA-----TCACAATGG---------AAACCAGAATTTTTTCCACGATGGAACTTCTTGTAGTGGTTCACGAGACGAGTTTCAGTGCACAAGTTTCTGAGCGGTGTGCAGCTGAAGCAAACatatgt
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17990   206661 323 +   357190 ACCTCCATGAGAACATATCTGTTAGCTCGATAGTCGCAAACTTTGCATTCGAATTTAATGATTCCAGTGTGCATCCTTTCATG--TGTCATCAC-----------------------------A---------------------------------------GCAACTTCACTAATGAAAATCTCTTCACAGAAGTGACATTGATAGGTTTTCGTAAACACGTGTGACATCTTCTTGTGCTTTCGCAGTTTACGAGGAGTCAAGAACTTCATGTTACAAAAA-----GAGCACCGG---------AATCCAGAGTTGGCGCCACGATGGAACTTCTTTCGGTGATTGAGAAGACGAAGATCAGTACACAGGTTTCTGATGGGGGTGCATTCAAAGCAAACATATGT
i caeJap4.Scaffold17990 C 0 C 0

a score=-5616.000000
s ce10.chrX              2854745 40 + 17718866 CTGAAAATATTAATTATTTAAGAGCTTGTCTTTAGTTTGA
s cb4.chrX              17606841 40 - 21540570 ctgaaaattggatttttgaataccTATGTATCTAGTTTGA
i cb4.chrX              C 0 I 918
s caeRem4.Crem_Contig15   348191 32 -  1794024 CTGTAATTTCGA------AATGGTTTTG--CTTAACTTTA
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    366215  7 +   484378 ctgaaaa---------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3520966  8 -  4147112 ctgaaaat--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   206984  0 +   357190 C

a score=-9206.000000
s ce10.chrX              2854785 93 + 17718866 ACTGGAACAAAGATCCAGAATGTAGTATTCAATTATAAGT-------TTTAAAATAAAGAAATTTAAGTGTATTTGTTATTTGTTATAAATGAGGGTTTT
s caeRem4.Crem_Contig15   348226 61 -  1794024 ATTAG---------------TTTGGTCATTCATCATACATAGCTGtaattcta--tcaaaaatctga-tGTAAACA--ATT-------------------
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    366222 58 +   484378 -------------------------------atcaaaggt-------TTTCTA--CGTGACATCTGGGTGTATGTG--ATTTGCTAGAGTATTGAGTTTT
i caeSp111.Scaffold582  C 0 I 79
s caePb3.Scfld02_0       3520974 51 -  4147112 ------------------------------tgtcaaatgT-----------------TGGCACCCGATTATATCTA--GTTTGCTTCGTTATTGGCCTTT
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990   206984  0 +   357190 C
e cb4.chrX              17606881 918 - 21540570 I

a score=-7039.000000
s ce10.chrX              2854878 111 + 17718866 aaactaaagtagcgccagtggggaaattgttagaaacccctggcgccaaaatggccaaatacaacaCTTT-TTTGATTTTTTTTTTCCCTAGTCCAACAGGAGCTATTACTG---
s caeRem4.Crem_Contig15   348287  45 -  1794024 ------------------------------------------------AGACGTTCGGTCCTGGGACTTG-TATGACATTTTGTATTTG------------------TACTC---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3521026  78 -  4147112 -------------GGCAATGGGAAAA-TATCAAAAGCACAT----CAGAAACTATAGGTGACAGAATAAgattcaaaatgttgtttctG-------------------ACTTGGT
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17990   206984   0 +   357190 C
e cb4.chrX              17606881 918 - 21540570 I
e caeSp111.Scaffold582    366280  79 +   484378 I

a score=-20641.000000
s ce10.chrX              2854989 160 + 17718866 AGATTTTG-CCACTttttgagataactatagcaatgtcgcatgatcagagtcctacaaagtttgaatattaatatttgaaac--aaaattgaaatatt-----aaaaaaatagaaggaaatttttttttgattggcCAGGTAACATTTTTAGAGTTTTTTGTATTGTT----
s caeRem4.Crem_Contig15   348332 124 -  1794024 ---------------TCTGCCATGCAC--AAAATCCTC-------------------AAATCGATGACCTCACATGTCAAAG---ATCTTGAGATATTCTCAAAAGCAGAAATAACTAGATTT-----GAAATCACTAAAGAACAATATAAGGG----CTGTACACTCAAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    366359  93 +   484378 AGattttattggttttctGTGATGGAAGGAGAACTATA-------------------TATTTTATGCCTTAGCCTATTTAAATTGATCCTGAGAAACT--------------TCgttaaattt-----gaa-----------------------------------------
i caeSp111.Scaffold582  I 79 C 0
s caePb3.Scfld02_0       3521104  83 -  4147112 ---------AGGTCTTCcaatttaaataaaaaaaaat--------------------tagttcgtGA--TAACTGATATAAC---ATTATGAGAAGCG--------------AAAAGGGATTTATAGGAAT-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   206984   0 +   357190 C
e cb4.chrX              17606881 918 - 21540570 I

a score=2409.000000
s ce10.chrX              2855149 6 + 17718866 TCTTAC
s cb4.chrX              17607799 6 - 21540570 tctCAC
i cb4.chrX              I 918 C 0
s caeRem4.Crem_Contig15   348456 6 -  1794024 CTTTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    366452 6 +   484378 acttaC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3521187 6 -  4147112 ACTGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   206984 0 +   357190 C

a score=86894.000000
s ce10.chrX              2855155 265 + 17718866 CAATTCACAGTCGTGATTCGCCATCTCTGCATCATTTT-CAACACATTTAAAACATTTGAGACACTGCTGAAACTCGACCATCTCCTCGTGCTTCTTTGCAAAATGTTTCTTGAGGGAAAACTCATTTCTAAAACGTTTATCACAGAACGGACATTGCGGCGACACTTTTTTCTTGT---ACGGACGCTTTAGTTGCTTGATTC----------TTCCATAATAGTCAAAACGTGGGACCAGGCCGCCA----TTGTTTTCTCCGGG----AAGGGGAATACTGAAA
s cb4.chrX              17607805 258 - 21540570 TAGCTCGCAGTGGTGAGTGTCCA----TATCCAATTCCGGAACACAGTGA-AACATTTCAGACATCGTTTGAAGTCTCCAATAACAGGATGCTTCTTCACAAAATGTCTCTTTAACGAAATCTCATATCTGAAACGCATGTCACAAAATGGGGACTGTGGTGACACCTTCTTGATAC---TAGGTCG----CTTCAA-----TTGTCTGA----TTCTATTTTG-------CA-GAGTGTTCTCCCATGGCTTTGGTTTCCCCTCTCCCGGAAGCGGAATACTGTAA
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig15   348462 260 -  1794024 CAGTTCACAGTTGTGAGTAGCTAGCGCTGCCTGGTTCT-CAACACAGTTATAGCACTTCAAACAATGTTGGAAATCCAAAAGTTCTTCatgctttttgaaaaaatg---cttCATCGAG--TTCATTTCTGAAACGTTTGTCACAAAACGGACATTGTGGAGAAACTTTCTTCTTGTACGCACGTCGTGTTCTTCGAA--Gtttgtcaaaaaagtttaaattt-----------gaGTCCCCTTCTTCG----TGATTTTCTCTATT----AATTGGAATGCTGAAC
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    366458 250 +   484378 AAGTTCACAATCATGCAGCTCCATTTCGGCATCATTTT-CAACGGATTTGAAGCATTTGAGGCACTGCTTGAATTCAGAAGCCTCCTCGTGCATCTTgttcaaatgtttcttcaGAGAAATCTCATCTTTATAGCGTTTGTCACAGAACGGACACTGTGGTGAAACCTTCTTGACAT---AATGag--------------gttt----------ttcgattttggaaTAATCG-GGAAAATCACCGTTC----TGTGGTTCTCCAGG----GAGTGGAATTCTACAA
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3521193 262 -  4147112 CAGTTCACAGTCATGTGCAGCCATCTCAGCCTCATTTC-CTgcacttttgaaacatttgagaCACTGTCGAATGTCTGTTACATTCTcatgtttcttcaaaaaatgctttttcagTGACATTTCATTACTGAAGCGCTTATCACAGAACGGACACTGTGGTGAGATTTTCTTCACA----AATGGGCGCTTTGCCAAT--ACTT----------TACCATATTGATTGAAACGAGGAATATAACCATTA----CTATTCTCCCCTGG----GAGTGGAATCCTATAA
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17990   206984 265 +   357190 CAATTCACATTCATGGCTTTGCATTTCCTGATCACTTT-CCACACATTTAAAGCATTTTAGACATTGCTTAAACTCGACCATCTCTTCGTGCTTCTttgcaaaatgttttttcagtGAGAACTCATTTCGAAAACGTTTGTCACAGAATGGACACTGTGGGGACACCTTCTTCTTGT---AAGGACGCTTCAGTTGCTTGATTC----------TTCCGTAGTAGTCGAAGCGGGGAATCATGCCACCA----TTGTTTTCTCCAGG----GAGTGGgatgctgaaa
i caeJap4.Scaffold17990 C 0 C 0

a score=-4290.000000
s ce10.chrX              2855420 21 + 17718866 ATGCATGACGAAATTTAG--AAA
s caeRem4.Crem_Contig15   348723 21 -  1794024 GTATATTATTTATCTTGA--AGA
i caeRem4.Crem_Contig15 I 1 I 2
s caeSp111.Scaffold582    366710 22 +   484378 -GGGCTTGATGAGCTGGATTAGA
i caeSp111.Scaffold582  I 2 I 4
s caeJap4.Scaffold17990   207249 13 +   357190 aaaatttgtttaa----------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3521455 34 -  4147112 I
e cb4.chrX              17608063 20 - 21540570 I

a score=-3346.000000
s ce10.chrX              2855441 20 + 17718866 ---ATAAACGGAAAACTGCTGAA------
s cb4.chrX              17608083 11 - 21540570 ---attaacTGAAA---------------
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig15   348746 11 -  1794024 ---GTAATCATAAA---------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    366736 11 +   484378 ---GAAAACACAAA---------------
i caeSp111.Scaffold582  I 4 C 0
s caeJap4.Scaffold17990   207262 20 +   357190 acgagaagaagaag---------aatata
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3521455 34 -  4147112 I

a score=150933.000000
s ce10.chrX              2855461 469 + 17718866 CCTACTAGTTTGGATCCTCAGATGGTTGAGAAATCTCGTTTTCCGGCGGGATGAATCCTCCTGTTTGTAGCTCTTC---AATGCGATTTGCTTCGATTTCTTCAAGCCGTTGCAGCTCCACTTC----TTCTTCTTGTTCACGAATATATTCCTCGTAGAGATCTGGATGTTTGTCGCGCAGATGTCGTTCATAAATGTTCTTCTCGATAAATCGATTCTTGCACTTTTTGCATCGAACCATTTTCTGTCGAATCAGCTTGCGTACAATCCGAACATCCGTTGGAGCATTC--GGTGGAGGAAGATCAATTCC-------ATCCTGATGATCGGCTAGAGTTAGTGTCTG--TTGAACTTCAGCAATACGGCAAGGAGGAAACTTCGAAGGGTCTCTGACCCGAAATCCCAACTCATCAAGAACAATTCGCTCTTTCT-GGATGGGCTTGATTTCTCCTCGAATTTGCTTCATAAATT------CTCCGACTCC
s cb4.chrX              17608094 460 - 21540570 CTTACTAATTAGGGTTGCCAAGCAACTCGACAACAGCATCTTCTGGTGGAATGAATGACCCAGTTTTCATCTCATCAAAAAGTTGGTGATCCC---TTTCTGCCTGTTTTTGAGCTTCACATTCTTCACTCTGCTGCTCGATGAACAAAT----CGTAGAGCTTGGGATGTTTGTCTCGAAGATGTCGCTTATAGAGATTCTTCTCAAGGAAACGAGTTTTGCACTTCTTGCATCGGATCATCTTCTGGCGAATCATCTTTCTCGCTACACGAATATCAGCAGGCATTTCC--ATTTCCGGA--AGCTCCTCT-------CCGTCACGTGCGATCAA---------CTTGGTCTGCACTTCATGCATACGGCTAATCGGGAATTTGAAAGGATCTCGATAGCGTAAGCCAAGGCCATCAAGAACGATGTGCTCTTTCG-GTGATGGCCGATGCTGCATGCGGAGATCCTCGAGAATCT------GACCCACTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   348757 450 -  1794024 CTTACAGATTTGGATTGtcagaatattcagaaatttcgtTCTCGGGTGGTACGAAACCGCCAGTTCTCAATTCTTC---AAGTTGATTAGCCTctatttcttctattctttGAAGTTCAGCTTC----CTCTTCTAATTCTTCAATATAT------------TTGATATGAGCGTCATGA-------GCGTACAGGACTTTCTC---AGAAAAcgatttttgcatattttacATCTTATCATCTTCTGACAAATAAGTTTTCTTGCAACACAAA-GTCTGTCGG----TCC--AGCT---GA--AGCTCGAATGTCAATACCTTCCTGGACAGTTAA-TGCCAGTGCCTg--ttgaatttcagcaattcgACATGGTGGATATTCAGACGGATCTCTATATCGGAACACAAGTTCATTAAGAACAACTCGTTCTTTTGTGAGCTGAGTTAATCTCTCCACGTATTCGCTTTATTACTTTGGTGAAGACAAATCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    366747 459 +   484378 ----CCCACTGGGATCTTCAGA------CGCGACATCAGTTTCCGGCGGAATGAACGCCCCCGAATGCAATTCCTC---CCAACGACGGAATTCAagttcgtttctttttcgagcctcggcttc----ttcttcctgtCTAATGATGTAATTCTCGTATTGGACAGGATGCTTGTCTCGCAAATGACGTTCGTAGATATTCTTCTCAGTGAACCGAGTCTTGCATACCTTGCATCGGATCATTTTCTGTCGAATCATCTTTCTGATAACTCGAACATCAGTTGGAGTGTTC--ACTGGTGGAGGAGCTATTCC-------TCTATATTCACAAGAAGAAGCAATGATATG--TTGAACTTCTTCAACACGACAAACTGGGAACTTAAAACGGTCTCTCAAACGGAACCCTAGATCGTCGAGTAcgattctttcttttt-gtggtGCTCTGATCTCTCCACGAAGTTTTTTCAACAGTA------TCCCAACACC
i caeSp111.Scaffold582  C 0 I 852
s caePb3.Scfld02_0       3521489 469 -  4147112 CTTACAAATTGGGGTTTTCAGACGGCTGCGAGATTTCGCTTTCGGGTGGTATGAACCCACCACTTTCCAACTCTTC---AATATGTCTCATTTCAATGTCTCGTTGtctttgttcttcaattgA----CTCCTCTAACTCTTGCATATACTGCTTGTGAAGATCCGGATGATGTTGTTCCAAGTGATGCTCATAGATAAATCTCTCGATGAAACGGTTTTTACACGCTTTGCATCTAATCATTTTCTGACGAAACATTTGTCTGACAACAGTAACATCTGTTGGAAACTTTGGAATATTGAA--ATCAATCCC-------CATTTGAATGCCGTCTAATGAGAGGGTTTG--TTGGAATTCTCCAAGACGAGAGAcgggaaatttggaaatatctCTGTAACGGCGTCCCATTCCATCAAGAACAATCCTTTCTTTCT-GTGGTGGTCTGTATTCTCCACGAAGTTGTTTCAAAAGCT------GTCCGACTCC
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17990   207282 469 +   357190 CTCACTGATTTGGATCTTCTGATGGTTGAGAAATCTCGTTCTCCGGTGGAATGAAACCTCCAGTTTGCAACTCCTC---AATACGATTTGCTTCAATTTCTTCGAGCCTCTGAAGCTCAACTTC----CTCTTCTTGCTCTCTAATGTATTCTTCATATAAAGCGGGATGTTTGTCTCGCAAATGTCTCTCGTAAATATTCTTCTCAATAAAACGATTTTTACATTTCTTACATCGAACCATCTTCTGACGAATCATCTTTCGAACAATGCGAACATCAGTAGGACCATTT--GGAACAGGAAGATCAATTCC-------TTCTTGATGGTCCGTCAGAGTTAACGTCTG--CTGAACTTCCGCTATTCGACAAAGAGGATATTTCGAGGGATCCCTCTCGATAAATCCCAGCTCATCCAAAACAATTCGCTTTTTTG-CGATTGGATTGGACTCGCCGCGCATCGTTCGTAGCAATT------CTCCAACTCC
i caeJap4.Scaffold17990 C 0 C 0

a score=1440.000000
s ce10.chrX              2855930 18 + 17718866 ACTGA------GCTTTGCACGTTC
s cb4.chrX              17608554 22 - 21540570 AGAGAGC--TGGCTCTgtcctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   349207 18 -  1794024 AGACA------ATTTTGCTCGTTC
i caeRem4.Crem_Contig15 C 0 I 10546
s caePb3.Scfld02_0       3521958 18 -  4147112 ------CTCTAATTTTGCTCCCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   207751 18 +   357190 AGAAA------GCTTTGCTCGTTC
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    367206 852 +   484378 I

a score=3146.000000
s ce10.chrX              2855948 24 + 17718866 TTTCTCTGGCTCTTC------TTTCTCAAC
s cb4.chrX              17608576 18 - 21540570 ttttggtgtctctTC------TTT------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3521976 24 -  4147112 TTCTCCTGGCTCCTC------TTTCTCTAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   207769 30 +   357190 TTTTTCTGTCTCTGCATTTGTTTTCTCAGC
i caeJap4.Scaffold17990 C 0 I 6868
e caeSp111.Scaffold582    367206 852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=-536.000000
s ce10.chrX              2855972 50 + 17718866 AGGAACCTTTGCTGACATTCCGAGTGCTTGAGCTAGAAGTTCTGAAAAAA
s cb4.chrX              17608594 44 - 21540570 -----GATAGGTTGCTCAGCTAA-AGTATCCAAataatcatctgaaaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3522000 50 -  4147112 TGGCATATCACTTGTGCGTCTGATCGTTTCCGACAAAACATCTGAAATGA
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e caeSp111.Scaffold582    367206 852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=-1001.000000
s ce10.chrX              2856022 34 + 17718866 CACACGTTAT----TAGTAAAAACTTGTAGTTAGATGT
s cb4.chrX              17608638 25 - 21540570 ataac--tattgCCTAGTAAA---------TTAGAG--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3522050 31 -  4147112 I
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e caeSp111.Scaffold582    367206 852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=3029.000000
s ce10.chrX              2856056 52 + 17718866 TTCAAATTACCAAA---ACCGA---TTCCCTTTTTGATCTCTTCATCGTCGTCATCGT
s cb4.chrX              17608663 55 - 21540570 ---AACTTATCAAACATACCGaactgtttctttttctcgtcTTTGCTGTAGTCGATGT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3522081 52 -  4147112 TTCAACTTACCAAA---ACCAA---GATCGCTTACATTATCATCATTGGAGTCATGGT
i caePb3.Scfld02_0      I 31 I 825
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e caeSp111.Scaffold582    367206 852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=520.000000
s ce10.chrX              2856108 8 + 17718866 CCTCCTCG
s cb4.chrX              17608718 8 - 21540570 TCTTCTCG
i cb4.chrX              C 0 I 819
e caePb3.Scfld02_0       3522133 825 -  4147112 I
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e caeSp111.Scaffold582    367206 852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=0.000000
s ce10.chrX              2856116 1888 + 17718866  
e caePb3.Scfld02_0       3522133  825 -  4147112 I
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e cb4.chrX              17608726  819 - 21540570 I
e caeSp111.Scaffold582    367206  852 +   484378 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=578.000000
s ce10.chrX              2858004 17 + 17718866 AAAAAATATGAAGGTTT
s caeSp111.Scaffold582    368058 15 +   484378 aaaaaacttgaa--ttt
i caeSp111.Scaffold582  I 852 C 0
e caePb3.Scfld02_0       3522133 825 -  4147112 I
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e cb4.chrX              17608726 819 - 21540570 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=36.000000
s ce10.chrX              2858021 51 + 17718866 AAAAAATTTCATTGTCAAAATTA-----TGAACACATATGAACCGGATTGATTGAG--------
s cb4.chrX              17609545 55 - 21540570 agaaaactttatttgaacatttgtttttgaaatacatAT-AACCGGGCAGTTTGAG--------
i cb4.chrX              I 819 C 0
s caeSp111.Scaffold582    368073 45 +   484378 -gaactatttattgaaaa----------gaaa--------aaccggaaaatttgagaaatttga
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3522133 825 -  4147112 I
e caeJap4.Scaffold17990   207799 6868 +   357190 I
e caeRem4.Crem_Contig15   349225 10546 -  1794024 I

a score=24976.000000
s ce10.chrX              2858072 44 + 17718866 GACAAGAACACCACTTTACACGTGGCGA-TTGAGAAGTTTTAATG
s cb4.chrX              17609600 42 - 21540570 -ACAAGAACACCACTTTACACGTGGCGa-tggagagaaaaaatt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   359771 44 -  1794024 GACAAGAACACCACTTTACACGTGGcgg-ttgaaaaatttgatta
i caeRem4.Crem_Contig15 I 10546 C 0
s caeSp111.Scaffold582    368118 41 +   484378 GACAAGAACACCACTTTACACGTGGCGA-TTGAGATA---AATTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3522958 42 -  4147112 GACAAGAACACCACTTTACACGTGGCGATTTGAGAGA---AATTG
i caePb3.Scfld02_0      I 825 C 0
e caeJap4.Scaffold17990   207799 6868 +   357190 I

a score=26697.000000
s ce10.chrX              2858116 120 + 17718866 CAAATAAAA---ACATACAAAACAATGTTAATTCAAAT-------TTTATATCAATTCTTTGTAACAATCCAGGTGCCGCCACCATATGGAAGTAGAGAAGCAGAAACCTGAAAAATGTAAAGTTTCTGA
s cb4.chrX              17609642  81 - 21540570 --------t---ataaGTAGA-AGATCT-----------------------TTAGTTTTTGGTAACTATCCATGTGCCACCGCCATACGGTAGGAGAGATGCCGATACCTGGAAAA--------------
i cb4.chrX              C 0 I 241
s caeRem4.Crem_Contig15   359815  85 -  1794024 tgaATA-AT---AGAAGCAGT-CGA--------------------------CTAATTTTTAGTGACAATCCAAGTTCCGCCGCCATACGGTAGAAGTGAAGCTGATACctgtaaaa--------------
i caeRem4.Crem_Contig15 C 0 I 15
s caeSp111.Scaffold582    368159  91 +   484378 TGTACAGAT---TCAAATA--------------------------------TTAATTCTTGGTGATTATCCATGTACCACCCCCGtatggaagaagagatgcAGAAACCTGGAAGATG-AAAGT---TGA
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3523000  91 -  4147112 TGTACAGAGATAATAAATAAT--GATGG-----------------------TTAATTTTTCGTTACTATCCACGTGCCGCCACCATACGGAAGAAGAGATGCAGATACCTGGAAAA--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   144092 127 -   357190 caaaaaaaa---aaacataaattaataaatacaCAAACAAAGAGAcaaacattaatttttaacCGCTATCCATGTTCCTCCACCATACGGAAGTAGAGATGCCAAGacctgtaaaaaaaaatgttttttt
i caeJap4.Scaffold17990 n 6868 C 0

a score=375.000000
s ce10.chrX              2858236 15 + 17718866 TTTTTAATTAGTTAT
s caeJap4.Scaffold17990   144219 15 -   357190 ttcttcaatgaTGAT
i caeJap4.Scaffold17990 C 0 I 9
e caePb3.Scfld02_0       3523091  0 -  4147112 C
e cb4.chrX              17609723 241 - 21540570 I
e caeSp111.Scaffold582    368250 16 +   484378 I
e caeRem4.Crem_Contig15   359900 15 -  1794024 I

a score=0.000000
s ce10.chrX              2858251 14 + 17718866 CTTAATATATTggt
e caePb3.Scfld02_0       3523091  0 -  4147112 C
e caeJap4.Scaffold17990   144234  9 -   357190 I
e cb4.chrX              17609723 241 - 21540570 I
e caeSp111.Scaffold582    368250 16 +   484378 I
e caeRem4.Crem_Contig15   359900 15 -  1794024 I

a score=-1764.000000
s ce10.chrX              2858265 111 + 17718866 tcagggtattttgaacgtatataccaacaatgtgctcaaacaaacgaatttagttttgaaacttcacaaaaaCTAGcgctgcgacactgaaaactgctcaaattttgagag
s caePb3.Scfld02_0       3523091  31 -  4147112 ------------------------CAATACTGTGCTTAAAA----Tagtttgtttttgg----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   144234   9 -   357190 I
e cb4.chrX              17609723 241 - 21540570 I
e caeSp111.Scaffold582    368250  16 +   484378 I
e caeRem4.Crem_Contig15   359900  15 -  1794024 I

a score=-814.000000
s ce10.chrX              2858376 41 + 17718866 aacaagcccaattttcttttaaattttgaatccccataaaa
s caeRem4.Crem_Contig15   359915 32 -  1794024 AAAAAGTTGTATTCTCAtttaaaat---------catgaaa
i caeRem4.Crem_Contig15 I 15 C 0
s caePb3.Scfld02_0       3523122 10 -  4147112 -----------ttttcattca--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   144234  9 -   357190 I
e cb4.chrX              17609723 241 - 21540570 I
e caeSp111.Scaffold582    368250 16 +   484378 I

a score=-12699.000000
s ce10.chrX              2858417 92 + 17718866 cattttgaaaattttttcagaagtttcattttgaaattcgttcaAAATACCCAAAACCGATAC------------TCCCCCTTTCACTGTCTCAAAAAT-TTTTA
s cb4.chrX              17609964 94 - 21540570 TATTTTAGCAACTAGttattagat----ttttaaaaatcatagaaaaaatcaagatcaAATGATCGACAACTGTGTTTTGCTCTtgtta--aaaaaaata-----
i cb4.chrX              I 241 C 0
s caeRem4.Crem_Contig15   359947 30 -  1794024 ----------------------at----tgttGTAATTCa--------------------------------gtgtttttatttcttt-----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3523132 31 -  4147112 -------------------------------tGTATTTCG-----------------------------------CTATGCTTTCaatg--taaaaaat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   144234  9 -   357190 I
e caeSp111.Scaffold582    368250 16 +   484378 I

a score=-3550.000000
s ce10.chrX              2858509 13 + 17718866 AGTTAA--------ATTT---C----TC
s cb4.chrX              17610058 25 - 21540570 agaagaaaaaagttgttt---tcaaCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   359977 10 -  1794024 -----------tttgctt---t----tt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    368266 10 +   484378 --------------gtttaaat----tt
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3523163  7 -  4147112 --------------gttt---c----tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   144234  9 -   357190 I

a score=382973.000000
s ce10.chrX              2858522 470 + 17718866 ACCCGGGGGTCTTGTTTGATGCGTATGTTCATGTTTCGAATGACCCTGTCATCGTTGGTCATGTGATCAATCGATGACATCACTCCACCACCATTGAGTGCCTAGAGAA---------AACAAA--------ACGTAAAACTATTATTTCTAATTAAGAAA------TGAGGGACCTGGTTAATGATTAAAAGACCACCACTTCGAATCAGTCGAATTGCGTGTTCATAATCATCCAAATAGTTTTCCCTCTTAAAATCATCCAGAAACACAAAATCGAAAGTGTTGGGTTCATTTGTTGCAAGTCGAGGCAATGATTTTTCGATGCTTTCAGATGTTCTCATTTGAATTCTGGACATTTGCGTAGCCGTGAGTTTTCTTGCGTGCTTCTGCCCAATTTTATCCCAGAAAACAGCATAGGCCGGATGCTCAAGTGCGACAACAATTCCTCGAGAATCAACTCTTTCGGCGACACCGAGTAATCCAAGACCAGT
s cb4.chrX              17610083 464 - 21540570 ACCCTAGGGTCTTGTTTGATGCGTATGTTCATGTTTCGAATGACCCTGTCATCGTTGGTCATGTGATCGATTGAAGACATCACTCCACCGCTATTAAGTGcctga-------------aacaaaaagaa---atgggTAACAACTTTCTGACATCGA-------------GGGACCTGGTTGATGATTAGCAATCCTCCACTTCGAATAAGCCTGATCGCATGCTCGTAGTCATCCaaataattttctcttttgaaatcgtccaaaaatacaaaatcaaACGTGTTGGGCTCATTAGTGGCCAATCTGGGTAGAGATTTTTCAATACTTTCAGAAGTTCGCATTTGGATTCTGGACATTTGAGTCGCAGTTAGTCTTCTGGCGTGTTTCTGGCCGACTTTGTCCCAGAAAACTGCGTAGGCAGGATGTTCAAGAGCAACGACGATTCCTCGTGAATCAACTCGTTCAGCGACGCCAAGAAGTCCAAGACCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   359987 470 -  1794024 accCTAGGGTCCTGTTTGATGCGAATGTTCATATTTCGAATAACTCTGTCATCATTAGTCATATAATCAATTGAAGACATCACACCGCCGCCGTTTAGAGCCtacaaaatattttgttaataaaaaaaa---aggaaaaatagtgTGTTAAT--------------------TACCTGATTGATAACTAATAACCCTCCGCTGCGGATTAATCGGATTGCGTGTTCGTAGTCATCGAGATAGTTTTCTCTCTTGAAGTCATCAAGGAACACAAAGTCAAATGTGTTAGGTTCATTGGTCGCAAGTcttggaagtgatttttctataCTCTCAGATGTTCTCATCTGGATTCTGGACATCTGAGTAGCTGTCAGTTTCCTTGCGTGTTTCTGTCCAATTTTATCCCAAAACACCGCATATGCAGGATGCTCAAGAGCAACAACTATTCCACGAGAATCGACTCTTTCTGCAACTCCGAGTAATCCCAGGCCAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    368276 478 +   484378 ACCCGAGGGTCTTGTTTGATACGTATGTTCATGTTTCGAATTACTCTATCATCATTCGTCATGTGGTCAATTGAAGACATCACTCCACCACCATTTAATGCCTGAAACACTGTGT---ATTACAGAAACCCTATGTATtacagaaattgaaaattta------------agaTACCTGATTAATAATCAGCAGTCCTCCACTTCTAATTAATCTGATTGCATGTTCGTAATCATCCAaatagttttctcttttgaaatcatccaaaaacacaaaatcGAATGTGTTGGGCTCATTAGTAGCCAATCGAGGAAGAGATTTTTCTATACTCTCAGAAGttctcatttgaattcttgaCATTTGAGTAGCTGTCAGTTTTCTGGCATGTTTCTGACCAATTTTATCCCAGAAAACAGCATATGCTGGATGCTCCAAAGCTACAACAATACCACGAGAATCAACTCGTTCAGCAACTCCAAGAAGTCCAAGACCAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3523170 466 -  4147112 accCGTGGATCTTGTTTGATTCGTATATTCATATTTCGAATGACCCTATCGTCGTTTGTCATATGGTCTATTGAGGACATTACTCCACCACCATTAAGTGCCTGAAACAAATTG----ATCTCAG-------Gtggaaaacag----tgaatttcaa------------TAGTACCTGATTGATAATTAAAAGCCCTCCGCTTCGAATAAGTCGAATTGCATGCTCATAGTCATCTAGGTAATTTTCTCGTTTGAAATCATCCAAAAATACAAAGTCAAATGTGTTCGGCTCGTTTGTGGCTAATCGAGGTAGTGATTTTTCGATGGATTCAGAGGTTCTCATTTGAATTCTTGACATTTGAGTAGCTGTTAATTTTCTGGCGTGTTTTTGACCGATCTTATCCCAAAACACTGCGTATGCTGGATGTTCGAGTGCAACTACGATACCCCGAGAATCGACTCTTTCAGCAACTCCAAGCAAACCAAGACCAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   144243 471 -   357190 ACCCGAGAGTCTTGCTTGATGCGAATGTTCATGTTTCGAATGACCCTGTCATCATTGGTCATATGATCTATAGAAGACATCACTCCACCTCCGTTGAGTGCctga-------------aatagagaaaa---------aacaaacattttcattCTAACACATCTCTTCAGGGACCTGATTTATGATCAGAAGACCTCCAGTTCGTAATAATCGGATAGCATGTTCATAGTCATCCAAATAGTTTTCCCTTTTGAAATCGTCCAGGAAAATAAAGTCAAAAGTGTTTGGCTCATTAGCGGCTAGTCGTGAAAGACTCTTTTCAATACTTTCAGAGGTTCTCATTTGAATGCGTGACATTTGAGTTGCTGTCAATTTTCGCGCGTGCTTCTGACCGACTTTATCCCAGAAAATAGCGTATGCAGGATGCTCGAGGGCAACGACAATTCCTCGCGAATCGACTCTTTCTGCAATTCCGAGAAGTCCTAATCCGGT
i caeJap4.Scaffold17990 I 9 C 0

a score=-2277.000000
s ce10.chrX              2858992 23 + 17718866 GAATACTCCTG---------AACGTTTATTTT
s cb4.chrX              17610547 23 - 21540570 AAACACacctg---------aaagtttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   360457 11 -  1794024 GAACACTCCTA---------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3523636 23 -  4147112 AAAAACGCCTGGAATTAGAGAAA---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   144714  9 -   357190 GAAGACACC-----------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    368754  0 +   484378 C

a score=-15228.000000
s ce10.chrX              2859015 97 + 17718866 AACAATACAAATCAATTTTTCATTATAACAAGTACGTTAAAAAGAGCCACACCACGTGAAGTGACTCAAAGTTGAGCCTGGTCGAAA----ATCTTTTTTG
s caeRem4.Crem_Contig15   360468 22 -  1794024 -------------AAGTTGTCATTGTAA----------------------AT------------------------------------------GTTTT--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3523659 48 -  4147112 -----------------TGTAA-TGTAA----------------------ACCGGTGAAGGAGTTTCAAAA--GAACATg-----------acggttttca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   144723 18 -   357190 ---------------------------------------------------------------------------------tacaaatattgtgttttt--
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17610570  0 - 21540570 C
e caeSp111.Scaffold582    368754  0 +   484378 C

a score=-20212.000000
s ce10.chrX              2859112 87 + 17718866 GAAAGCACCGTGAAATGAAAAATCATGGCTTCATGGCACAACATTAACCTGCATAATATCAGAAAAATCGGTAAACAGCGAAAAACA
s caeRem4.Crem_Contig15   360490 17 -  1794024 --------------------------AGACTGATAA-------TTAACAA-------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    368754 20 +   484378 -----------AAAAACA---CCTAGAAAATAAT-----------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3523707 55 -  4147112 aaaagaagagtaaaaaCAAAGCTCAGCGAATGGTAG-------TTGACTTCTACAa---cagaaa----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   144741 23 -   357190 ----------gtaCAAGATAGACCAGCCAGGGA------------------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17610570  0 - 21540570 C

a score=166629.000000
s ce10.chrX              2859199 393 + 17718866 TTATGAATTTTGACTCGTGACTTGCTTAAGCCCCTCATAGAAAAATAAAATTTTGATCTATTCTCCAAGTAACATACATGAAATATACTCACCAATTACTAAACATCTTGAAGGTCTATAAAGTGACATTAAAGTTTGAACTAGTTGCACAATTTCCGGGGTCACTGAACTGTGCCAAGAAATGTGTTGTGGGAGTGATGAAGCGGTTTGGGTGTCCTGAA-----AAAATT--------GTAA--CGGATA--AAAATTTTAAAT----TTTGCCT--TACCCTGAGCAAATCTTGAATGGAGTTGTCGATCATTGTTGAGTGACTGTAGCAGTATTGGAATAAAGGATCAGAAGTCTCAAAACTTTTCAGTTTGATGGAGCATCTTTGATCGGGAACTGAAATTA--------------------------------------------------------------AAATCATAT-----------
s cb4.chrX              17610570 338 - 21540570 --------------tcagga----tcttTG-----------------ACGTTT-----------CCAAG----------AAATGATACTTACCTATGACTAGACACCTCGAAGGTCTATACAACGACATCAGAGTCTGAACCAATTGAACCACTTCTGGTGTCACTGAACTATGCCATGAAATGTGTTGGGGAAGTGATGTGGCGGTTTGGGTATCCTGAa--tctcaat----------ttat--tttttg--aaaattgtgtat------TCGCTTGTACCCTGAGCAAGTCTTGAATTGAATTATCAATCATTGTTGAATGACTGTAACAGTACTGGAATAGTGGATCCGAAGTTTCGAAACTCTTCAGTTTGATCGAGCATCGCTGGTCGGGGACTGAAACAG--------------------------------------------------------------GGACTATTT-----------
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig15   360507 298 -  1794024 ------------------------------------------------------------------------------------------ACCAATCACAAGACATCGACTAGGTCTATAAAGTGACATTAGAGTTTGCACTAACTGAACAACTTCTGGAGTCACGGAACTGTGCCAAGAAATGTGTTGAGGTAGGGATGTCGCTGTTTGAGTGTCCTGAAATTCTCAATCA--------TTAA--TGAATA--AGCGCCGCAGAA------TGGGT--TACTCTGAGAAGATCTTGAATTGAGTTGTCTATCATTGTAGAGTGACTGTAACAGTACTGGAACAGTGGGTCAGAAGTCTCGAAGCTTTTTAGTTTGATGGAGCACCTCTGATCGggtactgaaa----------------------------------------------------------------------attc-----------
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    368774 329 +   484378 -------------Atcagaaattgtttt-------------------aaGATT----------------------------GAATC---TACCAATCACAAGACAACGGGATGGTCTGTACAAAGACATAAGAGTTTGAACCAATTGAACAATTTCTGGAGTTACAGAACTATGCCACGAAATGTGTTGGGGGAGCGACGTAGCGGTTTGTGTGTCCTATA-----AAATTA--------TTCTAATtagaa--aacatttcgaaa----ctttgTTC-TACCCTTAGCAAGTCTTGAATAGAGTTATCAATCATTGTTGAATGGCTATAACAATATTGGAAAAGTGGGTCAGAAGTCTCAAAACTCTTTAATTTGATTGAACATCGTTGATCGGGaactgaa------------------------------------------------------------------ataatattt-----------
i caeSp111.Scaffold582  C 0 I 12
s caePb3.Scfld02_0       3523762 433 -  4147112 tgaagaagttttcaTAAGAAGCCGTTTTTGTTC----GATTATGATAATgattt------ttgtgtaaa----------aaaaatcacatacCAATAACTAAACACCTAGACGGTCTGTATAACGACATCAGAGTTTGGACCAATTGAACAACTTCTGGAGTTACAGAACTATGCCACGAGATATGTTGGGGGAGAGAAGTGGCAGTTTGTGTATCCTGAA-----GAATTG--------GTAT--TCAGAATTCACGTTTCAAAT----ACTCATT--TACCCTGAGTAAGTCTTGAATTGAGTTATCAATCATTGTAGAGTGACTGTAGCAGTACTGGAACAATGGGTCGGATGTTTCGAAACTCTTCAATTTGATGGAGCACCGTTGGTCAGGAACTGAAAACA----TTATCAATATTATCGATGTTGCTTGAATTCCGTCTGTGTTCGAGAGACAGTTATCgccattatattt-----------
i caePb3.Scfld02_0      C 0 I 26
s caeJap4.Scaffold17990   144764 349 -   357190 ----------------------------------------------------------------------------------------TTACCAATCACAAGACACCTGGACGGCCGGTAAAGTGACATGAGGGTCTGAACCAGCTGGACAACTTCAGGGGTGACGGAACTGTGCCAGGAAATGTGTTGAGGGAGCACTGCAGCGGTTTGAGTGTCCTGAA-----GCATTAAacgtggttttt--ttgttt--ctcctTTTAAGTAAGTATATACA--TACCCTTAACAAATCTTGAATTGAGTCGTCAATCATTGTAGAATGACTGTAACAATATTGGAAGAGAGGATCCAAAGTTTCAAAGCTTTTCAGTTTGATCAAGCATCTTTGGTCGGGAACTGAAACAAAACATtacaaaactttttaaa-----------------------------------------atgttaTTCTCATTATCAGT
i caeJap4.Scaffold17990 C 0 C 0

a score=-29168.000000
s ce10.chrX              2859592  51 + 17718866 --------------ACATAC--------------------------------------AACTGT-----AAATTA--------------------------TTTATGTACACATATTAGAGACAATGCA------------------------------------AGATG
s caeRem4.Crem_Contig15   360807  29 -  1794024 ---------------tgtGT--------------------------------------AAGAGT-----AATTTG--------------------------TTTTGAGTAATT---------------------------------------------------------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    369115  28 +   484378 --------------tcattc--------------------------------------------------attca--------------------------tttctcatcGACT----------------------------------------------------GGTA
i caeSp111.Scaffold582  I 12 I 17
s caePb3.Scfld02_0       3524221  44 -  4147112 --------------TTATGT--------------------------------------------------AGTTG--------------------------TTTCTAATAGATTCCCACCGTTTGGGAA------------------------------------AGGTC
i caePb3.Scfld02_0      I 26 I 28
s caeJap4.Scaffold17990   145113 170 -   357190 ACAGAGCGCTGTAAATAtgctccattcgcagtggacgaggcggccacgttggggaggagagagtgcagaaaattgagagaacgtGACCGATAtttcgcgcttttttctctgaatctcactccaaatgcatttcactgtgcgattggagcgaattgtCAGCGCTTTAGACG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17610908  21 - 21540570 I

a score=207269.000000
s ce10.chrX              2859643 384 + 17718866 --------------------------TACTTACCACATGTGTCATATTTATTGGTGTGGGGAGCAGAGGTGACCGCAATTTTTTCAACAA-TTGGAGGGCGTGTGAACTTTTTAGCCTGAAGACAAAATCAGAA---TTGT-TTCTCTAATTCT--------ATGAAAGAATGGTGATTTCATACTTTAATGATAAAC-GGAATTCCAGCCGTTGAGCTGTAAACAGTCTGATATTCACTTGGTGGAGTAGGGATCAACATTGTGAT---TGTGGATGGCTC------------------------AGATGGAAGCTCTGCAGTTACTGACATTGGGGTAGTCCAAAACACAGAAGTTGTATATTCAGGAGTCACAGAAGGTGTCACTTTCTTCCAAACATTGTTCCGGATAATAGATGATGGACGGATGAATTGTTCGGTTGAGCTGAAA
s cb4.chrX              17610929 371 - 21540570 --------------------------TGCTCACCACAAGTATCATATTTATGAATTTGTGGCAATGATGTGACCGCAATTTTCTCACTAA-TTGGAGGCCGTGTGAACTTTCGGGCCTGAAAA-------------GTCGA-CATTTTAATCCG--------AATAACAATC--TGATATCATACCTTGATGATGTAC-GGAATTCCAGCTGTGGAGCTATACACAAATGGGACCTCCGTAGGGGATATTgggtaggttactgtagt---tgttacCGGTTCTTCAGT------------------AGTTGTAGCTTCCGTTGTCA-------TGGAGTGGTGAAGAAAACCGATGTAGTGTATTCTGGAGTCACAGCCGGCGTCACCTTTTTCCAAACATTGTTACGGATGATAGAAGATGGACGGATGAAAGACTCACAGGagctgaga
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig15   360836 379 -  1794024 --------------------------TGATTACCACACGTATCATACTTGTGAACTTGCGGAGTGGAAGTCACTGCGATTTTCTCCATAATTTGGTGGTCGTGTGAActtttttgcctgaaaat-ggATCATGG--GATgt-tgttttcatttg--------aaaaa-------------cgcACTTTGATTATAAATGGGGATTCCGGCCGTTGAGCTGAATACTAGTTGGGATTCACTAGGTGGTGTTGGATTTGTCATGGTAGT---TGTGAATGGTTCTTCCGG------------------AATCGGAAGGTCAGTGGGTACTGGCATTGGTGTGGTCCAAAATACTGATGTTGTGTATTCGGGAGTCACAGATGgtgtcacttttttccaaatgttgTTTCGAATAATAGATGATGGCCGGATAAAATGTTCGGTTgagctaaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369160 373 +   484378 --------------------------ttctcacCACATGTGTCATATTTATGAATTTGTGGAGTTGATGTTACTGCAATTTTCTCTATAA-TTGGTGGGCGTGTGAACTTTTTCGCCTGAAAG----TTTATGA---TTAT-TAGTTTCAATAA--------AACAG-------TGATATCATACTTTAATGATAAAT-GGAATTCCGGCAGTTGAGCTATAAACAACTTGAGATTCAGAAGGGGGCGAAGGGATTGTCATGGTCGT---TGTCAATGGTTCTTCGGT------------------TGTTGGAAGTTCTGT------CGTCATGGGTGTAGTCCAATAAACGGAAGTGGTATATTCAGGAATAACTGAAGgtgtcacttttttccagacgTTATTTCTGATGATGGAGGAAGGGCGGATGTATTGTTCAGTAGAGCTGAAA
i caeSp111.Scaffold582  I 17 C 0
s caePb3.Scfld02_0       3524293 380 -  4147112 --------------------------taTTTACCGCATGTGTCATATTTATGAACTTGAGGAGTTGATGTGACTGCAATCTTTTCAATAA-TTGGTGGGCGTGTGAACTTTCTAGCCTGAATA-----TCACGA-AGTAAT-TATTTTCATCAT--------AACAA-------TGATATCATACTTTGATGATAAAT-GGAATTCCGGCAGTCGAGCTATACACAAGTTGAGATTCAGCTGGGGGAGTCGGGATTGTCATCGTAGT---AGTAGATGGTTCTTCAGT------------------AGTTGGAGGATCTGTTGGGACTGTCATCGGTGTAGTCCAATATACGGAAGTAGTGTATTCCGGAGTGACTGAAGGCGTTACTTTCTTCCAAACGTTATTTCTGATGATATGAGAAGGACGAATGAATGGTTCAGTTGagctaaaa
i caePb3.Scfld02_0      I 28 I 75
s caeJap4.Scaffold17990   145283 437 -   357190 TTATACCGAACATAATagaactcgaaaaattacCACATGTGTCATATTTGCTAGTCGCTGGAGT---GGTGGCTACAATTTTCTCGTTGA-TCGGCGGTCGTgtgaattttttggcctgaaat--aATTCACTGTATTTATGTATTCCTATTAGGGATGCTTAAAAA-------CCGTATCCTACTTTAATAATAAAA-GGAATTCCTGCAGTAGTACTGTAAATGCTCTGAGATTCACTTGGAGGAACAGGCCATGTTATGGTGGTAGGTGTTTCTGGCTCTGGTGTGGTTGGAGAAATCGAAGAAGTTGAAGAATCAGTTTGAACTGGCATGTGTGTAGTGTAGACCACAGATGTTGTGTATTCGAGAATTGGGGACGGTGTCACTTTTTTCCAGACGTTGTTCCGGATCACCGATGATGGTCGAATATAGTTCTCTGTGGTGctgaaa
i caeJap4.Scaffold17990 C 0 C 0

a score=-1115.000000
s ce10.chrX              2860027 3 + 17718866 CAT-
s caeRem4.Crem_Contig15   361215 2 -  1794024 -aa-
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    369533 3 +   484378 TAT-
i caeSp111.Scaffold582  C 0 I 70
s caeJap4.Scaffold17990   145720 4 -   357190 taat
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3524673 75 -  4147112 I
e cb4.chrX              17611300 0 - 21540570 C

a score=819.000000
s ce10.chrX              2860030 3 + 17718866 ATT
s caeRem4.Crem_Contig15   361218 3 -  1794024 att
i caeRem4.Crem_Contig15 I 1 I 33
s caeJap4.Scaffold17990   145724 3 -   357190 att
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3524673 75 -  4147112 I
e cb4.chrX              17611300 0 - 21540570 C
e caeSp111.Scaffold582    369536 70 +   484378 I

a score=388.000000
s ce10.chrX              2860033 25 + 17718866 GGGTGAGTAATAAGTTTTGTCaatt
s cb4.chrX              17611300 17 - 21540570 -----aaaaagaaattttgtta---
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   145727 25 -   357190 ttgttaGCTAGAAAGTTCATcagtt
i caeJap4.Scaffold17990 C 0 T 26666
e caePb3.Scfld02_0       3524673 75 -  4147112 I
e caeSp111.Scaffold582    369536 70 +   484378 I
e caeRem4.Crem_Contig15   361221 33 -  1794024 I

a score=730.000000
s ce10.chrX              2860058 28 + 17718866 ttttttgtttttttttaaacttttataa
s cb4.chrX              17611317 27 - 21540570 -ttttagcttttcaagaaaattgtaGAA
i cb4.chrX              C 0 I 709
e caePb3.Scfld02_0       3524673 75 -  4147112 I
e caeJap4.Scaffold17990   145752 26666 -   357190 T
e caeSp111.Scaffold582    369536 70 +   484378 I
e caeRem4.Crem_Contig15   361221 33 -  1794024 I

a score=0.000000
s ce10.chrX              2860086 1042 + 17718866  
e caePb3.Scfld02_0       3524673   75 -  4147112 I
e caeJap4.Scaffold17990   145752 26666 -   357190 T
e cb4.chrX              17611344  709 - 21540570 I
e caeSp111.Scaffold582    369536   70 +   484378 I
e caeRem4.Crem_Contig15   361221   33 -  1794024 I

a score=1524.000000
s ce10.chrX              2861128 31 + 17718866 ACCTTATTACAGCCTGCGAGGTACTTGTCAT
s caeRem4.Crem_Contig15   361254 31 -  1794024 ACCTTATCAATGTCTCTGGTGTTTGCACGAA
i caeRem4.Crem_Contig15 I 33 C 0
s caeJap4.Scaffold17990   214667 31 +   357190 ACCTAATTACTGCTTCTTGGGTAGGAATAAT
i caeJap4.Scaffold17990 I 6868 C 0
e caePb3.Scfld02_0       3524673 75 -  4147112 I
e cb4.chrX              17611344 709 - 21540570 I
e caeSp111.Scaffold582    369536 70 +   484378 I

a score=422.000000
s ce10.chrX              2861159 1 + 17718866 T
s cb4.chrX              17612053 1 - 21540570 T
i cb4.chrX              I 709 C 0
s caeRem4.Crem_Contig15   361285 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369606 1 +   484378 T
i caeSp111.Scaffold582  I 70 C 0
s caeJap4.Scaffold17990   214698 1 +   357190 C
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3524673 75 -  4147112 I

a score=103036.000000
s ce10.chrX              2861160 279 + 17718866 GGGCGGGTTGTG---GTAGGCCAGATTTGATATTGAGGCTTTGTGAAAATTTTTTGTGCTTCTGTAGCTGGCAAGATAGTCTTCACTTGAGTT---------GTTGGTGGAGATGTTGTAGTTGGTTTCGTTG---------TCGTTGAAGGTTGAGCTGTCGTAGATTTTTCAG--------------TTGTTGAGGTTGGAAAAGTTGAAGTTGTAGTTGTTGGAGTTGTAGAGGTGGTCATGGGAATGTTTGGTGAAAATGTAGCATATCTGACTCTTTCAGTCGTTGTTGTAAATCTTATGATGTCTGAA
s cb4.chrX              17612054 258 - 21540570 GGTCTGGTGGTG---GTAGGCCAGATTTGGTACTGTGGC------AAcgcttttgaagtttctggtgtagttgtggttactgtagttgttgtt---cttgtagttgtagttgttggtgtagttgtggtatatg---------gtgtagttgttgtagtCGTA-----------------TGAAGTTCAGTAGTTGTGGTTGGAGCTTCTGTGGTTGTG------------------GTAGTCACCGGAACGTTTGGAGAAAACGTGGCAAAACGGACTCGTTGAGTGGTAGTAGTGAATCTTATGATATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   361286 294 -  1794024 GGACGAGTTGTG---GTAGGCCAAATTTGATACTGAGGTTTTGTGAATAACTTTGGCGGCTCGGATACCgtgtgagttgttgtgaattgtgtt---gttgtagttgtgggcatagttgtagtagtCGTAGATG---------GCGTAGTGGTACTGGTCGTCGTAGTAGTTGTGGTAGTTGGTGTTC--TAGTGGTGGTCGGAGCAGTTGTGGTGGTATAGAC---GATAGTAGTTGTAGTCTTTGGGATGTTCGGAGAAAATGTGGCAAATCGCACTCTTTCAGTAGTTGTTGTGAATCTGATGATATCTAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369607 279 +   484378 GGGCGAGTGGTT---GTGGGCCAAATCTGGTACTGTGGCTTTGTGAACACTTTTGGTGGTTCTGTCACGGGTAACAttgttgtcggttgagtt---gtggttgttggtgggagtgtcgttgttgaagtagtgg---------ttggaggtgtggtagtagttgttggagttgtcg--------------tagtagtggtttgtg---tagtggttgtagtagt---tcttggcgtagttgttACTGGGATGTTCGGGGAAAATGTAGCAAATCTTATTCTTTCAGTGGTAGTTGTAAACCGAATGATATCTGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3524748 303 -  4147112 GGTCTGGTAGTG---GTTGGCCAGATTTGGTATTGTGGTTTAGTGAAGACTTTTGGTGGCTCCGTTACGAGAACGGTCgttgttgcttgagttgtagtagtagttggtggttgtgtagtagttgttgtagtcgtagtggttcttggtgttgtcgttgttgtagtttgagttgtagtagtggtcggtc--tagtagtagttggag---ttgtggttgtggttgc---agtcgtagtagtggtaCTAGGAATATTTGGTGAGAAGGTTGCAAATCTAACTCTTTGAGTAGTTGTCGTGAATCGTATGATATCTGTA
i caePb3.Scfld02_0      I 75 C 0
s caeJap4.Scaffold17990   214699 288 +   357190 GGCCTAGTAGTAGTCGTTGGCCAAATCTGATAATTTGGTCTGGTAATCATTTTTGGTGGATCCACAACCACTGGCGATGCTGT--TCTAGGTT---TTTGT-GTCGTGGAAAAAGTAGTTACTGGTCTAGAAG---------TTGTGGTAGTTGTAGAAGGAACAGGAGTTGTAG------TTGTGC--GAGTAGTCGTTGGGATTGGTGTAGTTGTAGTTGT---TGGGGAAAGTTTCGTCGATGGAATATTTGGAGAAAAAGTTGCGAATCTCACTTTCTCGGTAGTGGTTGTAAAGCGGATAATCCCTAAA
i caeJap4.Scaffold17990 C 0 I 82

a score=-1798.000000
s ce10.chrX              2861439 2 + 17718866 AG
s cb4.chrX              17612312 2 - 21540570 AG
i cb4.chrX              C 0 I 228
s caeRem4.Crem_Contig15   361580 2 -  1794024 AT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369886 1 +   484378 A-
i caeSp111.Scaffold582  C 0 I 28
s caePb3.Scfld02_0       3525051 1 -  4147112 A-
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17990   214987 82 +   357190 I

a score=0.000000
s ce10.chrX              2861441 80 + 17718866 TTTTGAAATATTGGAGGGAGGAAAGTTTAGGAAAAATCCAATAACTTTATTTTGTTGTGCACACCTGATATTTCAATCTG
e caePb3.Scfld02_0       3525052 12 -  4147112 I
e caeJap4.Scaffold17990   214987 82 +   357190 I
e cb4.chrX              17612314 228 - 21540570 I
e caeSp111.Scaffold582    369887 28 +   484378 I
e caeRem4.Crem_Contig15   361582  0 -  1794024 C

a score=606.000000
s ce10.chrX              2861521 10 + 17718866 AAATAAAATT
s caeRem4.Crem_Contig15   361582 10 -  1794024 GAATAACATT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3525064  9 -  4147112 aaaaaaaat-
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17990   214987 82 +   357190 I
e cb4.chrX              17612314 228 - 21540570 I
e caeSp111.Scaffold582    369887 28 +   484378 I

a score=-3536.000000
s ce10.chrX              2861531 129 + 17718866 CTGTCCGAAATTTCTGAAGTTTTTGCATATGAAAATTTAGTACTAAATCCTGTTGATCGTTAAAATTCAAAACGTAAAAACTGTTAAGAATTAATAGAGAGCCCCATAGATAGAACCCCAAAAAGTGTG
s caePb3.Scfld02_0       3525073   9 -  4147112 ------------------------------------------------------------------------------------------------gagagc--------------------aaG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   214987  82 +   357190 I
e cb4.chrX              17612314 228 - 21540570 I
e caeSp111.Scaffold582    369887  28 +   484378 I
e caeRem4.Crem_Contig15   361592   0 -  1794024 C

a score=0.000000
s ce10.chrX              2861660 22 + 17718866 TCGCTGCGTGCAAACTCAACAG
e caePb3.Scfld02_0       3525082  0 -  4147112 C
e caeJap4.Scaffold17990   214987 82 +   357190 I
e cb4.chrX              17612314 228 - 21540570 I
e caeSp111.Scaffold582    369887 28 +   484378 I
e caeRem4.Crem_Contig15   361592  0 -  1794024 C

a score=-8947.000000
s ce10.chrX              2861682 45 + 17718866 GATTTAATACTAAATTTTTAGACTTATTCTAGAATAGTTTTGGAA---
s cb4.chrX              17612542 41 - 21540570 --ttt--ttGTGGGCTCATGGACTTCTACTGTATCAG---AGGAACTA
i cb4.chrX              I 228 C 0
s caeRem4.Crem_Contig15   361592  9 -  1794024 ------------------------------------G---ATTAATCA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3525082  4 -  4147112 -----------------------------------------GGAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   214987 82 +   357190 I
e caeSp111.Scaffold582    369887 28 +   484378 I

a score=-6320.000000
s ce10.chrX              2861727 33 + 17718866 CTCATTCCCCCACACTCTAACAGTTTCTCACCG
s cb4.chrX              17612583 27 - 21540570 -Cgataattcagaattt-----ctagcTTACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   361601 22 -  1794024 -CCAAATCTCCGG----------TATTTTACCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369915 11 +   484378 ----------------------CTCACTAACCA
i caeSp111.Scaffold582  I 28 C 0
s caePb3.Scfld02_0       3525086  7 -  4147112 --------------------------ATCACCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   214987 82 +   357190 I

a score=488332.000000
s ce10.chrX              2861760  886 + 17718866  
s cb4.chrX              17612610  980 - 21540570  
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig15   361623  939 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    369926  950 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3525093 1005 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   215069  938 +   357190  
i caeJap4.Scaffold17990 I 82 C 0

a score=-5211.000000
s ce10.chrX              2862646 13 + 17718866 CGAGTCGGATCTT----
s caeRem4.Crem_Contig15   362562  8 -  1794024 -----CGGATTGG----
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    370876 11 +   484378 C--GCCAGATCCA----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3526098 12 -  4147112 CG-GCCAAACcca----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   216007 11 +   357190 ------gtgtgtgaagA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17613590 17 - 21540570 I

a score=10173.000000
s ce10.chrX              2862659 87 + 17718866 TAAACTACGA-TTGGG--------GACTGCTGTGAGGACATGAAGTTTT----GGGGGATCATGTTACAG-------CATCCTGTACTTTTTACTGTGTACATAACT
s cb4.chrX              17613607 69 - 21540570 TAAACCAAAA-GTGAG--------------------AAGATgggg----------gggATCaagttacaaaatt---tttcttgcaCTTTTC-CCATGAAGAT---C
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig15   362575 86 -  1794024 GAAACCAAAATGTGAGGTTGTATGA--------AGTGAGATGAAGATTT-----AGGGATCAGGTTACAG-------CTTCTTGCACTTTTC-CTGTGTACATTAGT
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    370887 77 +   484378 ------AAAA-GTGAG--------A-------TTGTGAAGTGAGGGTTTTTGGAGGGGATCGAATTACAG-------TTTCCTGCACTTTTC-TCGTTCAAACAAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3526110 67 -  4147112 ------aaaa-gtgtg--------a--------aatgagaagaagattt-----AGGGATCGGGTTACAG-------CTTCCTGTACTTTTC-C--TTC--ATAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   216018 82 +   357190 -AAACTAGGA----GG--------A--------TTCGATATGGAGGATA-CCGAGGGGATCGTGTTACAG--TTCaactttttgcacttttt-atgTGTACACAGTT
i caeJap4.Scaffold17990 C 0 I 282

a score=22108.000000
s ce10.chrX              2862746 125 + 17718866 GTTATTTTCGTAAAGATTTTTAAT------------ATAGACAAT-ATTTTTG-AACCGGTCAAGCGG------TTCTCAGC-----GGAAAAAATCATTCATTGGAG---AAACCTGTTCGGATGGGATGTTGAT---AAGAATTGGTTCCGTTC
s cb4.chrX              17613676 125 - 21540570 GCT-CTAGAA--TAGGT-TTCAT--------------------------TCAGATACCGGtctatcagttttttttcccgacgggagacaaaaaataatcaatcaGTGTGTAAACCTGTTCAGA-AGGATAAAGATAAGAAGATTTGCTTCCGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   362661 137 -  1794024 GTT-TTTGCATGTAGATCTTCATCTTGTCATACACAAAAATCTAC-ACATCCGTAACCGGTCTTTCGG------TTCCCGAC-----ATAGAAAATAATTAATCAGTGTG-AAACCTGTTCAGA-AGAGAGTTGAT----AGATTTACTTCCGTTC
i caeRem4.Crem_Contig15 C 0 M 749
s caeSp111.Scaffold582    370964 130 +   484378 GTT-TTGCCCTgtacattttcattttgtcgTTCAGAATAGTCTAC-ACGTTCG-AACCGGTTTTTTGG------TTCCCGAcgata-aagaaaaataatcaatcAGTGAG-AAACCTGTTCAGA---GACG------------TTTACTTCCGTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3526177 136 -  4147112 GTT-TTTGCCCGTAGATCTTCATC---TAAAACATAAAAGTCTACAACAGTCT-AACCGGTCCTACGG------TTCccgaca--a-aagaaaaataatcaatcaGTGTGTAAACCTGTTATGA---GATGTTGAT---AAGATTCACTTCCGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   216100 282 +   357190 I

a score=9359.000000
s ce10.chrX              2862871 26 + 17718866 TAAATGAAAATTATCACAGCTTCTTA
s cb4.chrX              17613801 26 - 21540570 CGCATGATAATTATCACGGCTTTTTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    371094 26 +   484378 TAGATGATAATAATCACAgcttttca
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3526313 26 -  4147112 TAGATGATAATTTTCACAgcttttca
i caePb3.Scfld02_0      C 0 I 244
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=-863.000000
s ce10.chrX              2862897 21 + 17718866 --TCAACATTTCCGCTTCATCAA
s cb4.chrX              17613827 12 - 21540570 ATTGAATATCAC-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    371121 20 +   484378 --tcaaaatcaaCACTT-ATCAA
i caeSp111.Scaffold582  I 1 I 154
e caePb3.Scfld02_0       3526339 244 -  4147112 I
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=-4445.000000
s ce10.chrX              2862918 666 + 17718866  
s cb4.chrX              17613839 480 - 21540570  
i cb4.chrX              C 0 I 121
e caePb3.Scfld02_0       3526339 244 -  4147112 I
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeSp111.Scaffold582    371141 154 +   484378 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=0.000000
s ce10.chrX              2863584 135 + 17718866 actatgttactagtgttatatgatatctggacatttttgcactatgggagtagtttttaacaattttccttctgattcgactccacgtttaaACTTTAATAATAAATTTggcacttatgggttttgttcccccaa
e caePb3.Scfld02_0       3526339 244 -  4147112 I
e caeJap4.Scaffold17990   216100 282 +   357190 I
e cb4.chrX              17614319 121 - 21540570 I
e caeSp111.Scaffold582    371141 154 +   484378 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=-1097.000000
s ce10.chrX              2863719 211 + 17718866 aaatgttttaatattcccaatttcaaattaaacacaaaagcgtgaactttttGGAACGATTTGTAGAAATTAATGCTTTGTTCTTTACTTTT-GCTCACGTTTTTATTTTA---AAGGTGGAAAATTATATTttagaaaaccaaaacattttggagggaacgaaactcatgagtatcATAAATTTAAATAAACTGAATCCATAAATCGCTCTACA
s cb4.chrX              17614440 155 - 21540570 ATAtgttgaaactttttcgatttca---------------ttCAGACTACCCGAGATAAT----AGAACTCAAAG--------TATACTTATAGGGTAAGTTTCTATTATAGCAAACACGGTAGATCAAATTCGAGAAG----------------------------CTTggatattgaaattttgc-----tttCAGCTCCAGTCTactctaaa
i cb4.chrX              I 121 C 0
e caePb3.Scfld02_0       3526339 244 -  4147112 I
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeSp111.Scaffold582    371141 154 +   484378 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=-110.000000
s ce10.chrX              2863930 19 + 17718866 -CTTGCTTCTCAATTGACAG
s cb4.chrX              17614595 18 - 21540570 -aatgttttccaataATTG-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3526583 19 -  4147112 ctttttttttgaatagtta-
i caePb3.Scfld02_0      I 244 C 0
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeSp111.Scaffold582    371141 154 +   484378 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=4651.000000
s ce10.chrX              2863949 19 + 17718866 ATCTCTGATTACTTCCTTT
s cb4.chrX              17614613 19 - 21540570 ATCTATGGTGATTCCCCTC
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold582    371295 19 +   484378 ATCTTTGATGAGCTCTATT
i caeSp111.Scaffold582  I 154 C 0
s caePb3.Scfld02_0       3526602 19 -  4147112 aTCTTTGATGGTTTCCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   216100 282 +   357190 I
e caeRem4.Crem_Contig15   362798 749 -  1794024 M

a score=-4069.000000
s ce10.chrX              2863968  8 + 17718866 ---TA--ATAGCC--
s cb4.chrX              17614634 10 - 21540570 ---TAATTCTCCC--
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   363566  8 -  1794024 ---TA--TCAACT--
i caeRem4.Crem_Contig15 M 749 C 0
s caeSp111.Scaffold582    371314 13 +   484378 GGCCA--ATAAGTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3526621 11 -  4147112 TTTTA--TCGAGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   216100 282 +   357190 I

a score=951886.000000
s ce10.chrX              2863976 1764 + 17718866  
s cb4.chrX              17614644 1849 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   363574 1773 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    371327 1761 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3526632 1784 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   216382 1750 +   357190  
i caeJap4.Scaffold17990 I 282 I 16

a score=-5669.000000
s ce10.chrX              2865740 34 + 17718866 Cgaaag-aaaacgagcgagagagagagagagagag
s cb4.chrX              17616493 11 - 21540570 CCAA---ATTTCT---------------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   365347 11 -  1794024 CGAC---AAATCT---------------------G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    373088 12 +   484378 GCCAA--AAATCT---------------------G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3528416 14 -  4147112 GAAAGGTAAATCT---------------------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   218132 16 +   357190 I

a score=133408.000000
s ce10.chrX              2865774 387 + 17718866  
s cb4.chrX              17616504 375 - 21540570  
i cb4.chrX              C 0 I 409
s caeRem4.Crem_Contig15   365358 424 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    373100 449 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3528430 433 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   218148 535 +   357190  
i caeJap4.Scaffold17990 I 16 C 0

a score=46697.000000
s ce10.chrX              2866161 132 + 17718866 ---CTGAAACTTGGTAGGTTTATATGATAA-----TGATTAAAAAATCTCTATG----AAGTATTAATTTTACCGTTAATGCTTGGGCTCCGAAGTTTTGCACGACTATTGCTGCGAGATTCATTTGGAGTATAGTCGAACCTA
s cb4.chrX              17617288 133 - 21540570 ---ctgaaa-----aatgaatatttgtatatct--tattgactaGTACTGTATATAG-AAACAACAACGTTACCATTAATGCTTGGGCTTCTAAGTTTGGCACGACTATTGCTCCTAGAGTCATTGGGAGTGTActcgaatctg
i cb4.chrX              I 409 I 2
s caeRem4.Crem_Contig15   365782 135 -  1794024 ---CTGCAA-----AAACTATATTTG-AGatctagtttttaaaaatgaactaAATGGTAAATACCAATTGTACCGTTAATGCTTGGACTCCGGAGTTTCGCCCTGCTATTGCTTCTGGAGTCATTGGGTGTATAGTCGTAtcta
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    373549 133 +   484378 ---CTGAAA-----Taag-atttattttaattt--tcgaaattcattctcaaaacgaaaaataccAATTGTACCGTTAATGCTAGGGCTGCGTAGTTTGGCACGGCTGTTGCTTCTTGAATCATTGGGAGTGTActcaaatctg
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3528863 117 -  4147112 ---CTGAAA-----TAGGCAAATATGAAAAGCC--ACGATATT----------ACTAAAA--ACCA-----ACCATTAATGCTAGGACTACGTAGCTTTGCACGACTATTGCTTCTTGAATCATTTGGTGTATATTCAAACTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   218683 135 +   357190 ctgttaaaa-----aatacaattattATAAGAA--GAACTATTAAAAACATGTATGT-ACATACCGATCGTACCATTAATGCTGGGGCTTCGTAACTTTGCTCGACTATTACTTCTTGATTCATTGGGTGTGTGTTCATATCT-
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              2866293 2 + 17718866 AA
e caePb3.Scfld02_0       3528980 0 -  4147112 C
e caeJap4.Scaffold17990   218818 0 +   357190 C
e cb4.chrX              17617421 2 - 21540570 I
e caeSp111.Scaffold582    373682 2 +   484378 I
e caeRem4.Crem_Contig15   365917 1 -  1794024 I

a score=-5325.000000
s ce10.chrX              2866295 102 + 17718866 TGTGAAAATTACACATTCAAGGCAGTTCTGGGAACTTAAAATTCtataccccacgtgtgctcaaaagaacaaatttcgtaatgggaatctcaaaaatttttc
s caeSp111.Scaffold582    373684  15 +   484378 ----------------------------------------------------------------aagaaccGATTCAGT-----------------------
i caeSp111.Scaffold582  I 2 C 0
s caeJap4.Scaffold17990   218818  32 +   357190 ----------------------------------------------------------------------AAAATTATTAAAAGTGattttaaatatgttta
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3528980   0 -  4147112 C
e cb4.chrX              17617421   2 - 21540570 I
e caeRem4.Crem_Contig15   365917   1 -  1794024 I

a score=-9561.000000
s ce10.chrX              2866397 90 + 17718866 aagaatttttatggtgtttcaaaatttcgaaaaaagcctaatttaactaaaatcttaaatttcggtcactttttggtgGTTCAAAATTAC
s caeRem4.Crem_Contig15   365918 27 -  1794024 aataattt-------------------------------------atattaaTGATACACTCCG--------------------------
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    373699 19 +   484378 GAATACTC-------------------------------------ATTGAAATGTG----------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   218850 14 +   357190 -----ttt-------------------------------------ATGCTTTTGAT----------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3528980  0 -  4147112 C
e cb4.chrX              17617421  2 - 21540570 I

a score=-2919.000000
s ce10.chrX              2866487 24 + 17718866 AA-------------------TAATTTTTATATTCCTTACTTT
s cb4.chrX              17617423 42 - 21540570 aatgctctTTAAAAACTAATTAAAATCCAGCA-AACTCACTTA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   365945 22 -  1794024 ---------------------TAAGTTCAGTATCTCTTACTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    373718 10 +   484378 ---------------------------------TTCttacttt
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   218864  8 +   357190 -----------------------------------CTTACTTG
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3528980  0 -  4147112 C

a score=197354.000000
s ce10.chrX              2866511 221 + 17718866 GACGTTTTGCTCACTCTCCGTGGCCCGGCTCCGACTCCACTTTCAATATTAATCGGAACATACACCACTTGTCCATTCTCATTACTGTATGCAACTGGCATATCGAAATC---ATGAGTTCCGGACATTGAGTTCTGAATTTCCAGAGGAGAGAGGGGCCGGCTGGAGCCTTCGTGATTTCCTGCTGTGGCGTACAGGGGCGCTGATACAGGACGATTTGATGT
s cb4.chrX              17617465 224 - 21540570 GAAGTCTTGCTCATCCTTCTAGGCCCAGCACCCATACCACCTTCAATATTAATCGGAACATACACCACTTGCCCATTCTCATTGCTATATGCAACGGGTAAATCGAAATCTTGTTGAGTTCCAGacatggaattctgaatttccagcgGAGACAGTGGTCGGCTTGTTCCTTCGTGATGTCCAGCAGTGGCATACAGAGGTGCAGAGACAGGACGGTTTAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   365967 224 -  1794024 GAATTCTTGCTCATCCTTCTCGGACCAGCACCCATACCACCTTCAATGTTGATAGGGACATACACAACTTGACCATTTTCATTACTGTAGGCAACAGGCATATCGAAATCTTGTTGAGTTCCCGACATGGAGTTCTGGATTTCAAGCGGAGACAAAGGTCTGCTTGTTCCTTCATGATTTCCAGCTGTCGCATAGAGCGGAGCAGATACCGGGCGGTTGAGAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    373728 224 +   484378 gaatttttgctTAGTCTTCTTGGTCCTGCACCCATTCCACCTTCAATATTGATGGGAACATATACAACTTGACCATTTTCATTGCTATAGGCAACAGGAATATCGAAATCTTGTTGAGTTCCGGAcatggaattctgaatttctaaaGGAGAAAGTGGTCTGCTGGTGCCTTCAATGTTTCCAGCTGTTGCATAAAGTGGAGCAGAAACTGGACGATTCAAGGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3528980 224 -  4147112 GAAGTTTTGCTGAGCCTTCTTGGTCCTGCTCCCATTCCACCTTCAACATTTATTGGAACATATACAACTTGTCCATTCTCATTGCTGTATGCCACAGGCAAATCGAAATCTTGTTGAGTTCCCGAcatggaattctgaatttctaatGGAGACAACGGGCGGCTTGTTCCTTCATGGTGACCAGCAGTAGCATAAAGTGGAGCAGAAACTGGGCGATTCAGGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   218872 224 +   357190 GAACTTTTGCTCAGTCTTCTTACGCCTGCACCCATACCACTATCAATATTGATTGGAACATAGACGACTTGTCCGTTCTCATTACTATACGCTACAGGCATACTGTAATCTTGTTGATTTGAAGACATGGAATTCTGAATCTCCAGAGGCGACATTGGTCTACTTGAGCCTTCATGATGACCAGCAGTGGCATAGAGGGGCGCCGAAACAGGACGGTTCAGAGT
i caeJap4.Scaffold17990 C 0 C 0

a score=-449.000000
s ce10.chrX              2866732 13 + 17718866 GGAGCTCTGAAAA
s cb4.chrX              17617689 12 - 21540570 GGACGACTGCAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   366191 13 -  1794024 AGAAGACTGTAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    373952  3 +   484378 AGA----------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   219096 12 +   357190 GGAAGACTggaa-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3529204  0 -  4147112 C

a score=-11199.000000
s ce10.chrX              2866745 90 + 17718866 TTTTCAAACTTAAATATACCGGACCAaaacgaccgaatttcataatgagactactcaaaaaatttccaaaaaaaaatttcgaaaacatac
s cb4.chrX              17617701 41 - 21540570 ----------------TACCG-------ATAAT------------TAAAATTAattcaaaa-----cgaaaagaa---------gCATAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    373955 29 +   484378 -----------------------------CGAC------------Tgtaattatttgaaat-----tgtgaaaac---------------
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   219108  7 +   357190 ---------------------------------------------tgaattt--------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3529204  0 -  4147112 C
e caeRem4.Crem_Contig15   366204  0 -  1794024 C

a score=0.000000
s ce10.chrX              2866835 13 + 17718866 accccaattttcc
e caePb3.Scfld02_0       3529204  0 -  4147112 C
e caeJap4.Scaffold17990   219115  0 +   357190 C
e cb4.chrX              17617742  0 - 21540570 C
e caeSp111.Scaffold582    373984  0 +   484378 C
e caeRem4.Crem_Contig15   366204  0 -  1794024 C

a score=-4033.000000
s ce10.chrX              2866848 38 + 17718866 taaaatctgaaatttcgctaatttttctttgtcaccgt
s caeSp111.Scaffold582    373984 16 +   484378 ---------GCGTATTACTAAGTTC-------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3529204 26 -  4147112 TGAAGACTGAAATTTCACTGGTTACC------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   219115 12 +   357190 -----------atttttttttgt---------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17617742  0 - 21540570 C
e caeRem4.Crem_Contig15   366204  0 -  1794024 C

a score=-7829.000000
s ce10.chrX              2866886 52 + 17718866 agctggaatacactttttttgccctttatggcgtattttagtagttcacctA
s caeRem4.Crem_Contig15   366204 14 -  1794024 AGT-------------------------TGGTG-------GTTGCT------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3529230  5 -  4147112 ----------------------------TGACG-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   219127 18 +   357190 -----------gtttttttttctcgcagt-----------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17617742  0 - 21540570 C
e caeSp111.Scaffold582    374000  0 +   484378 C

a score=335669.000000
s ce10.chrX              2866938 471 + 17718866  
s cb4.chrX              17617742 425 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   366218 452 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    374000 431 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3529235 444 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   219145 514 +   357190  
i caeJap4.Scaffold17990 C 0 I 428

a score=18300.000000
s ce10.chrX              2867409 26 + 17718866 CATTTTCATACTCTTCCCTGCTGGAA
s cb4.chrX              17618167 26 - 21540570 cattttcaaattcttctctactgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   366670 26 -  1794024 CATTTTCAAACTCTTCTCTGCTGAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    374431 26 +   484378 cgttttcatattcttcccTACTAAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3529679 26 -  4147112 cgttttcatattcttctctGCTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   219659 428 +   357190 I

a score=244560.000000
s ce10.chrX              2867435 378 + 17718866 ACAAAATTTGTATAC-------CTCGGCTG--TTATCAATACTACTTTACGTACTTTTCTCTGAAAACCATTGCACTTTCACTTTTTGCTCGCCTCATCGCACCGAACGGCTCTCTTCTCTCGGTGGCGTAACCCATTCTGGATGGTGGTATTGGAGAAGATGGTTCT--GAAATTAAAATTTAGAA-ATCAATTCGAA--TTTTCAA--TGTTTAATCA-------------------CTTACCAGCATAAGAACCATGCGATAATGTTTGTGATCTTCGGTCATAAGTCAAGCGTGGGCCGCCACCTCCTTCAAAGTAATAATTG---CCGGCAGCTCTTCCACCGGAGCCAGCACCCTGCTTTCGGAATCTTTGACGTTCAACGTTTTTAACGACGGATGTCACTGGCTGAAA
s cb4.chrX              17618193 389 - 21540570 aaagaagacatgtGCTATCAATTCATAACT--CCAAAAATATGCC------tacttttctctgaaaaccaTTGCACTTTCACTCTTTGCTCGCCTCATGGCACCAAATGGTTCACGTCGCTCCGTTGCGTAGCCGATTCTGGACGGAGGTAGTGGTGAGGATGGTTCT--TAAA---------AATA-CATTTATCAAA--ATAACga--aacaaaacttttcaagaaaa---actaaacttaCCCGCATAAGAACCATGCGAGAGTGTTTGCGATCGTCTGTCATAAGTCAAGCGTGGACCAGCGCCGCCATCGAAATAGTAGTTACTGCCGGCAGCGCGGCCGCCGGATCCGGCACCTTGCTTTCGGAAGCGTTGGCGTTCCACGTTTTTGACCACAGAGGTGACAGGctggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   366696 372 -  1794024 ATGGACGtca------------ttctaatt--ttcaaaatgtactTTCACAtacttttctctgaaaaccaTTGCACTCTCACTCTTTGCTCTTCTCATGGCACCAAACGGCTCTCTCCGTTCAGTCGCATATCCGATTCTCGATGGTGGAAGTGGAGAGGATGGTTCT--GAAG---------AAAA-GGTTCGGTAAGTCGCATTAC--ATTACATCTTTTT----------------CTCACCAGCATATGAACCATGCGATAGTGTTTGCGATCTTCTGTCATACGTCAAGCGTGGACCAGCACCTCCTTCAAAGTAATAGTTACTTCCCGCCGCTCGTCCACCAGAACCGGCACCTTGCTTCCGGAATCTTTGTCGTTCAACATTCTTGGCCAGAGATGTGATAGgctgtaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    374457 367 +   484378 ------------TAT-----TTTTGTGAATACTCATAAACATTTATTTACTCACTTCTCTCTGAATACCATTGCACTTTCACTTTTGGCACGCCTCATTGCGCCAAAcggttctcttctttctgtaGCATAACCAATTCTGGACGGAGGTAATGGAGAAGAGGGTTCTAAAAAC---------AGAATATTGTTTCACA--TCgttaa--ttcaaaattt-------------------cccaCCAGCATAAGAACCATGCGATAATGTTTGCGATCTTCTGTCATAAGTCAAGCGTGGACCAGCACCTCCGTCAAAGTAGTAGTTGCTTCCCGCCGCTCTTCCACCGGAACCGGCACCTTGTTTTCGGAATCTTTGACGTTCCACGTTTTTCACTACTGATGTCACAGGCTGAAA
i caeSp111.Scaffold582  C 0 I 19
s caePb3.Scfld02_0       3529705 368 -  4147112 ------------TACTCTCATtttgtcaat--tgaaaaaaaaagaaatacgaaCTTTTCCCGGAAAACCATTGCGCTTTCACTTTTTGCACGTCTCATTGCACCAAACGGTTCTCGCCGTTCTGTTGCGTATCCCATTCTGGACGGAGGTAATGGTGAAGATGGTTCT--GAAC---------AGAA-GTGGATTCACA--ACATTGA-CTTTCTCACTA-------------------CTCACCAGCATAAGAACCATGCGATAGTGTTTGCGATCTTCTGTCATAAGTCAAGCGTGGACCAGCACCTCCTTCAAAGTAGTAGTTACTTCCTGCCGCTCTTCCACCCGAACCGGCACCCTGCTTTCGGAATCGTTGTCGTTCCACATTCTTGACAACGGATGTAAcaggctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   220087 373 +   357190 -------------acaatatatgCATTATT--GTTAAAACAGTTT------TACTTTTCTCTAAAAACCATGGCACTTTCGCTCTTTGCGCGCCTCATAGCACCGAATGGTTCACGTCGTTCCGTAGCGTATCCCAACCGTGTCGGTGGAATTGGCGAGGACGGttct--aaag---------aaaa---------aaa--aaatgaattttctaaACTTTTTGAAACAGTTCAATATTCTCACCTGCATAAGAGCCGTGTGAGAGCGTTTGTGATCTTCTGTCATATGTCAACCGTGGCCCAGCACCTCCTTCAAAGTAATAGTTGCTGCCGGCCGCTTTTCCGCCTGAGCCAGCTCCTTGCTTGCGGAATCTTTGCCTCTCAACGTTCTTGGCAACAGAAGTAACTGGCTGGAA
i caeJap4.Scaffold17990 I 428 C 0

a score=-20.000000
s ce10.chrX              2867813 3 + 17718866 TAA-
s cb4.chrX              17618582 2 - 21540570 -aa-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   367068 2 -  1794024 -aa-
i caeRem4.Crem_Contig15 C 0 I 75
s caePb3.Scfld02_0       3530073 2 -  4147112 -aa-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   220460 3 +   357190 -AAT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    374824 19 +   484378 I

a score=546.000000
s ce10.chrX              2867816 1 + 17718866 A
s cb4.chrX              17618585 1 - 21540570 a
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3530076 1 -  4147112 a
i caePb3.Scfld02_0      I 1 I 291
s caeJap4.Scaffold17990   220463 1 +   357190 A
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    374824 19 +   484378 I
e caeRem4.Crem_Contig15   367070 75 -  1794024 I

a score=437.000000
s ce10.chrX              2867817 7 + 17718866 ATAAAAT
s cb4.chrX              17618586 7 - 21540570 agcaaat
i cb4.chrX              C 0 I 1762
s caeJap4.Scaffold17990   220464 7 +   357190 ATAGACT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3530077 291 -  4147112 I
e caeSp111.Scaffold582    374824 19 +   484378 I
e caeRem4.Crem_Contig15   367070 75 -  1794024 I

a score=-112.000000
s ce10.chrX              2867824  9 + 17718866 ------------AAGTTACCT
s caeJap4.Scaffold17990   220471 21 +   357190 TACAAAATACTGATATTGTCT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3530077 291 -  4147112 I
e cb4.chrX              17618593 1762 - 21540570 I
e caeSp111.Scaffold582    374824 19 +   484378 I
e caeRem4.Crem_Contig15   367070 75 -  1794024 I

a score=0.000000
s ce10.chrX              2867833 732 + 17718866  
e caePb3.Scfld02_0       3530077 291 -  4147112 I
e caeJap4.Scaffold17990   220492   0 +   357190 C
e cb4.chrX              17618593 1762 - 21540570 I
e caeSp111.Scaffold582    374824  19 +   484378 I
e caeRem4.Crem_Contig15   367070  75 -  1794024 I

a score=182.000000
s ce10.chrX              2868565 2 + 17718866 AA
s caeSp111.Scaffold582    374843 2 +   484378 AA
i caeSp111.Scaffold582  I 19 C 0
e caePb3.Scfld02_0       3530077 291 -  4147112 I
e caeJap4.Scaffold17990   220492 0 +   357190 C
e cb4.chrX              17618593 1762 - 21540570 I
e caeRem4.Crem_Contig15   367070 75 -  1794024 I

a score=-792.000000
s ce10.chrX              2868567 12 + 17718866 -ACCTAACAGAAA
s caeRem4.Crem_Contig15   367145 12 -  1794024 ATCCAATTAAAC-
i caeRem4.Crem_Contig15 I 75 C 0
s caeSp111.Scaffold582    374845 12 +   484378 -ACCTTTTTGACA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3530077 291 -  4147112 I
e caeJap4.Scaffold17990   220492  0 +   357190 C
e cb4.chrX              17618593 1762 - 21540570 I

a score=-303.000000
s ce10.chrX              2868579 1 + 17718866 A
s cb4.chrX              17620355 1 - 21540570 a
i cb4.chrX              I 1762 C 0
s caeRem4.Crem_Contig15   367157 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    374857 1 +   484378 G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3530368 1 -  4147112 A
i caePb3.Scfld02_0      I 291 C 0
e caeJap4.Scaffold17990   220492 0 +   357190 C

a score=782699.000000
s ce10.chrX              2868580 1005 + 17718866  
s cb4.chrX              17620356 1023 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   367158 1024 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    374858 1010 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3530369 1013 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   220492 1014 +   357190  
i caeJap4.Scaffold17990 C 0 I 111

a score=93828.000000
s ce10.chrX              2869585 181 + 17718866 -TCATGTC-----G---GAAGCAT--ACGTCAGACAGGAGCAAATATTGTGG-------TTCGGAGGAGTTAGCTATCAGTGCGTGGGGGGGGGT--------GGGA-------GGTTTTAGAACCGGTCACTGTTGTATTTACTTCTCAGTCGGAGTTAAAT----AATGGCCACG-GGAGTGCAC-AAAGTTGAGCGCGG-GAGGTACCG--CCAAATGGA
s cb4.chrX              17621379 185 - 21540570 GTCATGTCTATCGG---GAAGCACAAACGTCAGACAGAAGCAAATATTGTGGGCTCCCACCC-----AGTCAGCTATCAGTG--------AAGAA--------GGGA-------GTTTCTAGAACCGGTCAGTGTTGTATTTACTTCTCAGTCGGAGTTAAAT----AATGGCCTAG--GGTTGAACAAAAGTTGAGCGCAG-AAATTAGTGCCGGAAACTGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   368182 183 -  1794024 GTCATGTC-----G---GAAGCAC--ACGTCAGACAGGAGCAAATATTGTGG-------CTC-----AGTCAGCTATCAGTGTGGTAGGCAAAAC--------GGGAGGGCAACGTTTCTAGAACCGGTCATTGTTGTATTTACTTCTCAGTCGGAGTTGAAT----AATGGCCAAG-AGGGTGCAC-AAAGTTATGCG-GG-AAATTACAG--AGGAATTga
i caeRem4.Crem_Contig15 C 0 I 392
s caeSp111.Scaffold582    375868 196 +   484378 GTCATGTC-----G---GAAGTAC--ACGTCAGACAGGAGCAAATATTGTGG-------CTC-----AGTCAGCTATCagtgagagaaagaaatttgTGTGTGTGGGGGGCAACGTTTCTAGAACCGGTCATTGTTGTATTTACTTCTCAGTCGGAGTTAAATAATGAATGGCCAAC-AGAGTGCAC-AAAGTTGAGCG-GGAAAATTACCG--CCGAATAGA
i caeSp111.Scaffold582  C 0 I 351
s caePb3.Scfld02_0       3531382 186 -  4147112 GTCATGTC-----GGAAGAAGCAC--ACGTCAGACAGGAGCAAATATTGTGG-------CTC---AGAGGTAGCTATCAGTGA---AGAGAAAAT--------GGGAGGGCAACGTTTCTAGAACCGGTCATTGTTGTATTTACTTCTCAGTCGGAGTTAAAT----AATGGCCAACGGGAGTGCAC-AAAGTTGAGCG-GG-AAATTATTG--GGAAAAAGA
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold17990   221506 111 +   357190 I

a score=362.000000
s ce10.chrX              2869766 33 + 17718866 TAATACGATAC------GAAAAAATGG----CCaaaaaaattt
s cb4.chrX              17621565 32 - 21540570 TAAGATGGTCGCGTT--GAAACTAtag---------agaattt
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3531579 43 -  4147112 TGATATAAAGGCATCCGGAAACAAAAGgttaccgaaaaaattt
i caePb3.Scfld02_0      I 11 I 372
e caeJap4.Scaffold17990   221506 111 +   357190 I
e caeSp111.Scaffold582    376064 351 +   484378 I
e caeRem4.Crem_Contig15   368365 392 -  1794024 I

a score=-6470.000000
s ce10.chrX              2869799 899 + 17718866  
s cb4.chrX              17621597 633 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3531622 372 -  4147112 I
e caeJap4.Scaffold17990   221506 111 +   357190 I
e caeSp111.Scaffold582    376064 351 +   484378 I
e caeRem4.Crem_Contig15   368365 392 -  1794024 I

a score=-2592.000000
s ce10.chrX              2870698 92 + 17718866 AAAACACTGTCATTTTTGTAAATTTTAATCAAACT-----TTTTTTCAAATTTGTGAAGAAAGTTCGCTTGGAAAATGTTGG--AACATCAACGCCAAC
s cb4.chrX              17622230 79 - 21540570 ACTAGACTGT--ttgttccaaatttt--ccaatctctcaattttttcaaatctttaaaatcaac--------------tttg--aatGTCACACTTATC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   221617 83 +   357190 AACAAACAGtctgttttgaaaaacacaaGAAGAag-----taatttgaaattttcagagatgTT------GCAAAATGTTTGTaaaagtaaaac-----
i caeJap4.Scaffold17990 I 111 C 0
e caePb3.Scfld02_0       3531622 372 -  4147112 I
e caeSp111.Scaffold582    376064 351 +   484378 I
e caeRem4.Crem_Contig15   368365 392 -  1794024 I

a score=546.000000
s ce10.chrX              2870790 2 + 17718866 AA
s caeRem4.Crem_Contig15   368757 2 -  1794024 aa
i caeRem4.Crem_Contig15 I 392 C 0
s caeJap4.Scaffold17990   221700 2 +   357190 aa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3531622 372 -  4147112 I
e cb4.chrX              17622309 0 - 21540570 C
e caeSp111.Scaffold582    376064 351 +   484378 I

a score=-2216.000000
s ce10.chrX              2870792 7 + 17718866 AAAATT--C-
s cb4.chrX              17622309 5 - 21540570 -AAATT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   368759 6 -  1794024 ataatt----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    376415 7 +   484378 -AAACTTC--
i caeSp111.Scaffold582  I 351 I 2
s caeJap4.Scaffold17990   221702 7 +   357190 aaaact---c
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3531622 372 -  4147112 I

a score=77682.000000
s ce10.chrX              2870799 94 + 17718866 AAAACTACTTACTTTATTGAGTCCGCTAAAATTTGGTCTTTTAAAGATAACAAAACAAATCCAGCATCTGATAAAGATATACCGCTCCCTGAAA
s cb4.chrX              17622314 91 - 21540570 -AA--AACTCACTTTATTGAGTCAGCAAGAATTTGGTCTTTCAGTGATAACAGCACAAATCCTGCGTCTGATAGTGAAATTCCGCTCCCTAAAA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig15   368765 93 -  1794024 -aatcGACTTACTTTATTGAGTCTGCAAGTATTTGGTCTTTCAGAGATAATAATACAAAACCTGCATCAGATAAAGAAATTCCGCTCCCTGAAA
i caeRem4.Crem_Contig15 C 0 I 13
s caeSp111.Scaffold582    376424 94 +   484378 CAAAAGACTTACTTTATTGAGTCTGCAAGTATTTGGTCTTTTAGTGATAGGAGTACGAATCCAGCATCTGACAAGGAAATACCGCTCCctgaaa
i caeSp111.Scaffold582  I 2 I 7
s caePb3.Scfld02_0       3531994 94 -  4147112 AAATCAACTTACTTGATAGAGTCTGCTAGTATTTGGTCCTTCAGCGATAATAAAACGAAACCAGCATCTGACAATGAAATTCCGCTccctgaaa
i caePb3.Scfld02_0      I 372 I 62
s caeJap4.Scaffold17990   221709 84 +   357190 ----------acttaaTAGTCTCCGCCAGAATTTGATCTTTCAATGAAAGAAGCACAAATCCAGCATCTGAAAGCGATATTCCGCTCCCTGAAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-16083.000000
s ce10.chrX              2870893 69 + 17718866 AAAGTGCCTAT--TTGG--------TGGTGGTTTTTAAAAGTGTTCAGTTTGAATACACTCCCGTCTTGTCATGGATAT
s cb4.chrX              17622409 37 - 21540570 GGAAtaacaat--tcaa--------ttt----tcccaacTATA---------------------GCTTTTCA-------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15   368871 39 -  1794024 GAATTGAGGATTATTAA--------TTGCA--TGCCAAAtgtg-----------------------ttttca-------
i caeRem4.Crem_Contig15 I 13 C 0
s caeSp111.Scaffold582    376525 34 +   484378 aaagttagGTCCATTTG--------TTCTATTCGTGAagtat-------------------------------------
i caeSp111.Scaffold582  I 7 I 5
s caeJap4.Scaffold17990   221793 46 +   357190 ---ATAAAAGttattcaaaacatttttgtgcgCCTGAATTATGTTTGAT------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3532088 62 -  4147112 I

a score=419844.000000
s ce10.chrX              2870962 470 + 17718866  
s cb4.chrX              17622446 552 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   368910 488 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    376564 444 +   484378  
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3532150 450 -  4147112  
i caePb3.Scfld02_0      I 62 C 0
s caeJap4.Scaffold17990   221839 455 +   357190  
i caeJap4.Scaffold17990 C 0 I 1626

a score=-156.000000
s ce10.chrX              2871432 3 + 17718866 TTG
s cb4.chrX              17622998 2 - 21540570 at-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   369398 3 -  1794024 ATG
i caeRem4.Crem_Contig15 C 0 I 284
s caeSp111.Scaffold582    377008 3 +   484378 atg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3532600 3 -  4147112 ATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   222294 1626 +   357190 I

a score=485.000000
s ce10.chrX              2871435 2 + 17718866 CT
s cb4.chrX              17623000 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    377011 2 +   484378 tt
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3532603 2 -  4147112 TT
i caePb3.Scfld02_0      C 0 I 377
e caeJap4.Scaffold17990   222294 1626 +   357190 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=-4461.000000
s ce10.chrX              2871437 107 + 17718866 -------TTCAGTTTCTGC---TCACCAATCAAAATTCTTATGCGAAAA-----TTTTTTGTTTT----TTGATCCGGCAATTAACAATGTTTTTAGCAGATGattttttttaaataaattaaaaC
s cb4.chrX              17623001 111 - 21540570 ----ttgaaaagttttaatgGGAGATGAggaaaaattgttgttttaaAAAGAGGCTATTTGCTGCAAGAATGTTCCGTCAA---------CTTTCAGGGGCTGCACTGTTCTGTATATTCTAAA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    377020  85 +   484378 ctcatttttcgatttcaac---------------attctctttcctaaaa----ttgtttttcat-------tttcttcac---------attctatg------atttttttgaacaaaatagaac
i caeSp111.Scaffold582  I 7 I 21
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e caeJap4.Scaffold17990   222294 1626 +   357190 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=-5005.000000
s ce10.chrX              2871544 740 + 17718866  
s cb4.chrX              17623112 703 - 21540570  
i cb4.chrX              C 0 I 164
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e caeJap4.Scaffold17990   222294 1626 +   357190 I
e caeSp111.Scaffold582    377105  21 +   484378 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=0.000000
s ce10.chrX              2872284 169 + 17718866 TGTCGCATTTTTCAACCCATAAGTATTTGTTTCCGTCCACCAATAAAATTGTGAGAGACGAAGCAAAAATTGAAAACTTCTTGGGTCAGGAAATTTGAGAACAAATTGATCGAATAATTTTAGCGTACATTTAttaaagttgaagtagcgcaggtaggggttttgtcta
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e caeJap4.Scaffold17990   222294 1626 +   357190 I
e cb4.chrX              17623815 164 - 21540570 I
e caeSp111.Scaffold582    377105  21 +   484378 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=-589.000000
s ce10.chrX              2872453 199 + 17718866 aataca---cttataaaaatcgaatatc------------ataataaaatgttccaaaaaaatttacattt------------------atggaagttttca-------------------------------gtcaaaattttgataaaatgctaaatttaaaaaaattgct--------ttgaaggaaattcagagcaatgccgcatgttccgaccacaaaatgtttta-acaagagtaatacaaacaaaattaaagtataaaa----------------atcg------tt
s cb4.chrX              17623979 283 - 21540570 gatacaatttttaaaaaaattgattgtcaCCGAGGAAGGAATAGCAGAATGCCCGGATTAAATCAACATTTTAATTCTAACAATGagcaattgaaattttcaaaatctacagaAAATTATCTTTTGTTTGAATGTCaaagctttcaaaaagttgtaaactgataaaa--tgtttatcataatttaaGAAGTGTTTGTCCGTTggtacattttt---------gatatcttgcataggaatagagataattaAGCTAAAACCTATAAGTATGGAGTCTCTTCTATCGcaagtttc
i cb4.chrX              I 164 C 0
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e caeJap4.Scaffold17990   222294 1626 +   357190 I
e caeSp111.Scaffold582    377105  21 +   484378 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=-2445.000000
s ce10.chrX              2872652  92 + 17718866 gaataaaatcttttttttg------CTTTTTTAATGAT-ATATTGGACGTTCGCATGTTGTCATAAAT---AATAAA----TTATTGAATCAT-TTTCTTACAATCA
s cb4.chrX              17624262 103 - 21540570 agacaaaattttttatttgaccGGACTTCTTGGCTTTTCAGAATGAATG-CCAAATTTTGt-ataaat--caataaaatcttTATTGAAATATATAACTGAACAAGA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   223920  78 +   357190 GACTATAATTGTTTTGTAG------TTCTAT--------GTATTTGACG------TTTTAT-AAAAATAGAGATAAT----CTAATAAACTCT-TTATTTATAA---
i caeJap4.Scaffold17990 I 1626 C 0
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e caeSp111.Scaffold582    377105  21 +   484378 I
e caeRem4.Crem_Contig15   369401 284 -  1794024 I

a score=302.000000
s ce10.chrX              2872744 2 + 17718866 AA
s caeRem4.Crem_Contig15   369685 2 -  1794024 AA
i caeRem4.Crem_Contig15 I 284 C 0
s caeJap4.Scaffold17990   223998 2 +   357190 GA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3532605 377 -  4147112 I
e cb4.chrX              17624365 0 - 21540570 C
e caeSp111.Scaffold582    377105 21 +   484378 I

a score=-860.000000
s ce10.chrX              2872746 8 + 17718866 CTGATTTA
s cb4.chrX              17624365 5 - 21540570 ---AATTA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   369687 8 -  1794024 CTGAATTA
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    377126 7 +   484378 -ctgatta
i caeSp111.Scaffold582  I 21 I 2
s caeJap4.Scaffold17990   224000 3 +   357190 CTG-----
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3532605 377 -  4147112 I

a score=290498.000000
s ce10.chrX              2872754  936 + 17718866  
s cb4.chrX              17624371  875 - 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   369698  926 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    377135  966 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3532982  947 -  4147112  
i caePb3.Scfld02_0      I 377 C 0
s caeJap4.Scaffold17990   224003 1005 +   357190  
i caeJap4.Scaffold17990 C 0 I 351

a score=41799.000000
s ce10.chrX              2873690 91 + 17718866 CGTTTACTATTTTATTTTGTCCATTCTAATTGATGATAGATCAATAGATAGA-ATAACAACAAAAACAAA-AAGTGTTTTTTTTGGTAAGTGA
s cb4.chrX              17625246 83 - 21540570 CATTTAC-----TATTTTGTCGATCCTAATTGATGATACAAC-----ATCTCTCCACCCGCAAACAAATAGAAAGATGTTGTTTGATAATTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   370624 82 -  1794024 CATTTAC-----TATTTTGTCGATTCTAATTGATGATACAACCGCAGATTGAAATACCAACAAAC------AAAGATGTTGTTTGATAATTGa
i caeRem4.Crem_Contig15 C 0 I 114
s caeSp111.Scaffold582    378101 81 +   484378 CATTTAC-----TATTTTGTTGATCCTAATTGATGATACACCCGCAGATAGA-ATAAGAACAAAC------AAAGATGTTGTTTGATAATTGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3533929 81 -  4147112 CATTTAC-----TATTTTGTCGATCCTAATTGATGAAACAACCGCAGATAGA-ATAAGAACAAAC------AAAGATGTTGTTTGATAATTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225008 351 +   357190 I

a score=-597.000000
s ce10.chrX              2873781 10 + 17718866 TATAAAGTTT-
s cb4.chrX              17625329 10 - 21540570 GATGTTATTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    378182  9 +   484378 -ACAGTATTT-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3534010 10 -  4147112 -gatgtatttt
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold17990   225008 351 +   357190 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=575.000000
s ce10.chrX              2873791 3 + 17718866 TTA
s cb4.chrX              17625339 3 - 21540570 CTA
i cb4.chrX              C 0 I 46
s caeSp111.Scaffold582    378191 3 +   484378 TTA
i caeSp111.Scaffold582  C 0 I 45
e caePb3.Scfld02_0       3534020 33 -  4147112 I
e caeJap4.Scaffold17990   225008 351 +   357190 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=0.000000
s ce10.chrX              2873794 824 + 17718866  
e caePb3.Scfld02_0       3534020  33 -  4147112 I
e caeJap4.Scaffold17990   225008 351 +   357190 I
e cb4.chrX              17625342  46 - 21540570 I
e caeSp111.Scaffold582    378194  45 +   484378 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=60.000000
s ce10.chrX              2874618 2 + 17718866 TA
s caePb3.Scfld02_0       3534053 2 -  4147112 tg
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold17990   225008 351 +   357190 I
e cb4.chrX              17625342 46 - 21540570 I
e caeSp111.Scaffold582    378194 45 +   484378 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=-46.000000
s ce10.chrX              2874620 25 + 17718866 CACCATACT---TATAAAGAAATTTCTG
s caeSp111.Scaffold582    378239 22 +   484378 CATAATCTT---CATAAAGcaattc---
i caeSp111.Scaffold582  I 45 C 0
s caePb3.Scfld02_0       3534055 25 -  4147112 caaaatgctGAACAATAAACATTTC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225008 351 +   357190 I
e cb4.chrX              17625342 46 - 21540570 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=2184.000000
s ce10.chrX              2874645 8 + 17718866 TGAATGTA
s cb4.chrX              17625388 8 - 21540570 tgaacttt
i cb4.chrX              I 46 C 0
s caeSp111.Scaffold582    378261 8 +   484378 tgaacttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3534080 8 -  4147112 TGAACTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225008 351 +   357190 I
e caeRem4.Crem_Contig15   370706 114 -  1794024 I

a score=41141.000000
s ce10.chrX              2874653 143 + 17718866 GTTTCCGAAC-ACGGATTGTCAGAAAATCTC------------ATTTC----ATAGTCATGCATGATTGCCAAAACGGTTGC----CAGCAT-------GTCTGTTTTCGGGGAA-AG-TCGTAATAATTCT-----TCTC-------AAACAGTT----ATAAG------CGGATGGTCTCTTCCTCCCCCTTC-
s cb4.chrX              17625396 183 - 21540570 gtttCCGCACTAGAGATTGTCAAAAGATTCCcctgttttcttgttttccacTATTGTCATGCACGATGCCCGCCACCGCCGG--AATGCTAT-------GTCTGTTTTC--GGAATATATCGTAATAATTCTCATCCCCACCTCCCCAAAACAGTTAAAAAGAAGCGAAAACGgtttgtcttctt--ctccttccg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   370820 150 -  1794024 GTTTCCGCACTATAGATTGTCAAAAGATTTC---------------------ATAGTCATGCATGATGCCCCTGATGCTTAC--GACGAAGT-------GTCTGTTTTC--GGAA-AT-TCGTAATAATTCG-----CCAC-------AAACAGTTATAAATAAGCAAAAACGGATTGTAGTCGTCACTACCTCCG
i caeRem4.Crem_Contig15 I 114 C 0
s caeSp111.Scaffold582    378269 154 +   484378 ttttccgcaCTAGAGATTGTCAAAAGATTTG---------------------ACAGTCATGCATGATGCCCCGCGCTGATGCCAAGTGAAATCTGTTCGCTCTGTTTTC--GGAA-AT-TCGTAATAATTCT-----TCCCTTGC---AAACAGTT----ATAAGAGAAAACAGATCGTATTCAACGC-----CAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3534088 143 -  4147112 GTTTCCGCACTAGAGATTGTCAAAAGATTTC---------------------ATAGTTATGCATGATGCCCCCCGGATATGCCAAGTGAAAT-------Ctctattttc--ggaa-at-tcgtAATAATTTC-----TCTCCT-----CAACAGTT----ATAAGCGAAAACGGATTGTAGTTGTCGC-------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225008 351 +   357190 I

a score=31221.000000
s ce10.chrX              2874796 69 + 17718866 CGCGCAATCCAAGGACAAC---ACCCTGATAT-----TGT-GTGGTACACCATCCGAAAATTCCATAGAAACCGAAAG
s cb4.chrX              17625579 54 - 21540570 c-------CCAAGGACAAC---ACCCTGATATTAAGGAGG-ACGATAT---ATCCGAACATTCC----------AAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   370970 65 -  1794024 CGAGAAATTCAAGGACAAC---AGTTTTATAC-----AGA-AGGGTAT----TCCGAACATTCCATAGAAACCGAAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    378423 65 +   484378 CGCGCAATTCAAGGACAAC---ATTCTGATAT-----TGAGGCGGCA-----TCCGAACATTCCATAGAAACCGAAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3534231 64 -  4147112 CGCGCAATTCAAGGACAAC---ATTCTGATAT-----AGA-GCGGCA-----TTCTAACATTCCATAGAAACCGAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   225359 68 +   357190 CGCGCAC-TCAAGGACAACAATACTTTGATAT-----TGC-AAGGATC---GGCGGAAAATTCCattgaaaaagaaag
i caeJap4.Scaffold17990 I 351 I 50

a score=-1220.000000
s ce10.chrX              2874865 48 + 17718866 ATATTTATCCG-----AA-------CGAGATAAGACTAGACGAGGGGGGGGGGGAGGGGT
s cb4.chrX              17625633 49 - 21540570 --ATTTATCCG-----AGAAAATCCAGAGATAAGGCATTCTTT----TGGGTGGCGGGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   371035 39 -  1794024 --ATGCATCCG-----AG-------ATAGATAAGGCATTCCTT-------ATTGCCGAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    378488 37 +   484378 ATATTTAtccggagaaga-------agagataac----------------ACTAGTAAGG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3534295 29 -  4147112 ATATTTATCCG-----AA-------AGAGATAAC-------------------AGTAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225427 50 +   357190 I

a score=101586.000000
s ce10.chrX              2874913 142 + 17718866 GACATCTG--------CCACTA-----------CTAACCTTTACAGCAGCGTAGGCGAAGAACATGAAAGCACTTCCGATGACAATAAATCCGATTCCGATCCAAGAGACAATGTAAGACCATCCGTAGTTATGACGGGACGTCAATTTGAGAATCTGAAA
s cb4.chrX              17625682 146 - 21540570 GAATTTTG--------CATATATGTA-------CTAACCTTTACTGCCGCATACGCAAAGAAATAGAATGCACTGGCAATGACGATGCATCCGATTCCAATCCATGATACGATGTACGACCATCCGTAGTTGTGACGAGATGTCAGTTTGAGGACCTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   371074 146 -  1794024 ATTTGCCG--------CCGGTATATT-------ATTACCTTTACTGCCAAATatgcgaagaagaagaagatactGGCAAGAACGATGCTGCCAATTCCGGTCCATGAGACCATGTATGACCATCCGTAGTTGTGGCGAGATGTCAATTtgagaacctgaaa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    378525 139 +   484378 A-----TG--------CCAGTT--CT-------CTCACCTTTACAGCTGCGTaggcaaagaaaaagaatgcaCTTCCGACGACGATGCAACCGATTCCGATCCATGACACGATGTAAGACCATCCGTAGTTGTGACGAGATGTCAGTTTGAGAACCTGGAA
i caeSp111.Scaffold582  C 0 I 162
s caePb3.Scfld02_0       3534324 144 -  4147112 GTCATCTG--------CCAGAA--TT-------TTTACCTTTACTGCATagaaggcgaagaagaagaatgcaCTTCCGAGGACGATGCTGACAATTCCGATCCAGGAGATGATGTATGACCATCCGAAGTTGTATCGAGATGTCAATTTGAGCACCTGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   225477 161 +   357190 GATATCCGACATATATCCATTCCATTTTATCGGCTTACCTTTACCGCACTGTACGCAAAGAACATGCAGATACTTCCAACAACAGTGAAACCGATACCGATCCAAGAAATGATGTACGACCATCCAAAGTTGTGACGGGAAGTCAGTTTGAGAacctggaa
i caeJap4.Scaffold17990 I 50 C 0

a score=-2068.000000
s ce10.chrX              2875055 2 + 17718866 -AT
s cb4.chrX              17625828 2 - 21540570 -AT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig15   371220 2 -  1794024 -at
i caeRem4.Crem_Contig15 C 0 I 418
s caePb3.Scfld02_0       3534468 1 -  4147112 --T
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17990   225638 2 +   357190 aa-
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    378664 162 +   484378 I

a score=684.000000
s ce10.chrX              2875057 3 + 17718866 GAA
s cb4.chrX              17625836 3 - 21540570 gaa
i cb4.chrX              I 6 C 0
s caePb3.Scfld02_0       3534484 3 -  4147112 GAc
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   225640 3 +   357190 aaa
i caeJap4.Scaffold17990 C 0 I 13737
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=-794.000000
s ce10.chrX              2875060 21 + 17718866 ATCAATTTGTTTTGGTTTTTT
s cb4.chrX              17625839 16 - 21540570 attaaat--tttcgggat---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3534487 18 -  4147112 acttgat--ttttgtttttt-
i caePb3.Scfld02_0      C 0 I 579
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=-134.000000
s ce10.chrX              2875081 138 + 17718866 TCCTACATAGACAATATTATAATTTCTGATACCAAACGTTTGGCGTTGTCTATTTGATAGCT-CCAAGTTGTTAAACCGGTTCTGAGTATTTTGAACGAATATACTCaaattagaggtgtgcggcaaatttgtcgaatt
s cb4.chrX              17625855 112 - 21540570 ---tgcgaaggaaaaatgaaa------------agactAGTAGTGTTTTTAGGATGAAAACTATCAGGTTG----ATTGGTTCCGCATATTTTTTATA---gtatttgaaataaaaat-tgtggATAA----TCAAATT
i cb4.chrX              C 0 I 222
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=0.000000
s ce10.chrX              2875219 199 + 17718866 tgccgaacttgccgtttgccgtccttggcaaatttgccaaatttgccgcacactcctgACCCAAATGCGCAAAAATGAACGGATATCGTAATGAACCGTGTCAAAAATTGTAAGAACTTTAAAAAAAAATCATGGTTAaaaatttcgagttttggcaacttttctgtgttgcagtggtataaagttgattgttttcgaa
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e cb4.chrX              17625967 222 - 21540570 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=711.000000
s ce10.chrX              2875418 68 + 17718866 tcatcatattttattgcacattttagtagt--cggatttttta------------aaatta----aagtacatttagagccgatag
s cb4.chrX              17626189 86 - 21540570 ttatcataatttgacctatatttcatcagtaatagatttttgatatcttttccagGAATTGTAATAATTAAGCCTAAAATTGATGG
i cb4.chrX              I 222 I 102
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=0.000000
s ce10.chrX              2875486 123 + 17718866 gcggctttaaatgcatttcaatcaacgacataatgtaagatctactaaattatgcaacaaaaaaaaatgataaagcaataaaaattattttccaacaactgtggcacggagaagctggtaaaa
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e cb4.chrX              17626275 102 - 21540570 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=-1241.000000
s ce10.chrX              2875609 405 + 17718866 tttaagattttcgacaaaatggccta-atttttttcaaaatttttaaccgc---cataaaaagttttttaagcgtttttattttttagggtctaaaagttgaaaatctttcgaa----------ccgttagtcct--gcttATTATTTTATCACTTCGA----TTTTTAC--AGTTGCaaaaaaacaatttttaaaattttataaaC---------TGAAAAATAACTCTGCAATAATTTTTCTATCT------TACTGATTTTCAGGCTGCAAATATCTCAGATCTTTACCAATT-TTAATTTT-------TTAATTGAAATGTTT----------TTAAACGTTTAACAATTGGC-------------AAATTTTGCAAATCGTTTTTTTCC---AAATTTTTTTCCAATAAGTACCTAATTTTACTTTAAACATTTGAACTTATGTATGGCTAATTTGTTGTTTTTTTACCAA
s cb4.chrX              17626377 435 - 21540570 CTacaaattgtcga-aaaat--ctTATAtctatttcagaatttccaacaCCTCACATCTCaattttgata--------taatttttagccttgaaaacatgaaaa--ttttgaatataaatTTTCCGCATCTCCTAggatcataatttt----tttcgagaattttttactgatttccGGAATTAGGttctttgagatcaattatcctgattcctgtgaaagata-----gcaaaattttgtcgattgATAGAATGTTGGTTATGTAACGATAAATAATTCAActgttaaaaaattattgatatctcttacattGATCGAGATATTTGGGCTCAAAGTCGACGGTTTG--AGttggcttctatcagaggaaaatCTTGATCATGCTTCCGATCCTATAACATTCCACCCAATCCATTCAAAACTTTCCCT---GCATTTCAATTTCTTCCGGG---------TGCCCTTC-----A
i cb4.chrX              I 102 C 0
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I
e caeRem4.Crem_Contig15   371222 418 -  1794024 I

a score=180.000000
s ce10.chrX              2876014 1 + 17718866 --C
s cb4.chrX              17626812 1 - 21540570 --C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   371640 3 -  1794024 ccc
i caeRem4.Crem_Contig15 I 418 C 0
e caePb3.Scfld02_0       3534505 579 -  4147112 I
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I

a score=1950.000000
s ce10.chrX              2876015 14 + 17718866 CCCTAACAAAATTG
s cb4.chrX              17626813 14 - 21540570 TCTCaacaaaatgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   371643 12 -  1794024 tttca--aaaattg
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3535084 14 -  4147112 CCCTGAGAATATTG
i caePb3.Scfld02_0      I 579 C 0
e caeJap4.Scaffold17990   225643 13737 +   357190 I
e caeSp111.Scaffold582    378664 162 +   484378 I

a score=63869.000000
s ce10.chrX              2876029 342 + 17718866 AAACAAAAT--TT----AAAGTAG------CCGGACAATTGTTT--CCACAGGACTTTCACTCTTCTTC-CAACACTTGAT-AGAAGTGTC-GACATGATGACACAG-----GGAGAGAGTCGATTCTGCTTTGCAAATATCGGC--------AAACTCAAGTGA----CTACGCTTAT-----------CTTG--GATGGCATGCCTACGTAATTTTCACCGATTTTGTTTTTTTTGTTGTTGAAATAG----------TGAAATAGTGAAATGAAAATTATT---------------------TCAAGTGTTGTGGGGTAAAAAGTGATACTAAAGAAAGTAGA-------AAGTGTGACTTGAATAAAAATATGTATTTAAAAGTATATAAGAGGTTTTTTTTGATAAACTAAATTATTATATT
s cb4.chrX              17626827 291 - 21540570 ------aaatttttgaaaaagtagcCAATCCCAGCTGATTGTGTTGCC---GGACTTTCACTCATCTTT-CAACACTTGATGAGAAGTGTCTGACATGATGCGGaaaaaaaaGCAGAGAGTCCA----GCTTTGTAAACACCCATCGGCAGAGAAACTCAAGTGATTTTCTACGCTCATCATGTAGGCGGCCTACTGCTGCCATGCCTACGTAATTT-------------------------------------------CAagacaattca---aaaactattgaG---------------------GGCAGTTTCAAG----------TGTTTTTG---------------C-AGATTATTTGAATTAGAAAA-CCCTCCAG----------------------AAACAATTTAAAGA------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   371655 339 -  1794024 ------aaa--ttcgaaaaagtag------CCAGATGATTGTGT--AC---GGACTTTCACTCATCTTTCCAACACTTGAT-AGAAGTGTC-GACATGATGCGAAAA-------AGAGAGTCCATCCTGCATTGTAAACATCCAC--------ATACTCAAGTGA--TTCTACGCTCATCGTGT------CCTG--GATGGCATGCCTACGTAATTTtcccccgtttttttttcatatttcggaagaaaagtgaatcaaacaagacaattca---aaaattattgcgTGATGCGA----------CCAGAAAGTTTCAAG----------TGTTTTGG-ATTTGAACCACA--C-TTATGTTTTCAATAAGAACA-ACATTTGGTCGT--------GCTATTTTTCAGAGTATGAAAAAC------T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    378826 330 +   484378 AAtcgaaat--ttcggaaaagtaG------CCAGGTGATTGCCT--CC---GGACTTTCACTCATCTTC-CAACACTTGAT-AGAAGTGTC-GACAAGACGCAAAAA-------AGAGAGTCCATCCTGCTTTGTAAACATCGGC--------AAACTCAAGTGA--CTCTACGCTCATCATGT------TTTC--AATGGCATGCCTACGTAATTTTCTCccgttttgttttg---tttttgaagagaa----------tgagacaattta---aatataa-------attcatttgagaggtttcaagtgtttttggatttcaatTCATGTTCTCGAAAGTAAGTGAAGAACGAGAATGCATGAGTAATCTCA-ACA----------------------GTTTGAAAAGATCTGA----------
i caeSp111.Scaffold582  I 162 C 0
s caePb3.Scfld02_0       3535098 336 -  4147112 ------AAG--TTCGAAAAAGTAG------CCAGGTGATTATGT--CC---GGACTTTCACTTATCTTT-CGACACTTGAT-AGAAGTGTC-GACATGATGCGAAAG-------AGAGAGTCCATCCTGCATTGTAAACATCGGC--------AAACTCAAGTGA--CTCTACGCTCATCATGT------CTTG--GATGGCATGCCTACGTAATTTTCTCccgttttttgttg--------gaaaagaA----------TAAGACAATTCA---GAAATTATTGCGTTACGCAATTGAGAAGTTTCAAGTGTTTTCGGATGTAAAACATTGTTTACAAAAGTAAACGACG--CAAAATCTAAAGTGTGACCATA-ATATTTTC------------gtgctgttccaaaaaatccaatg--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   225643 13737 +   357190 I

a score=248533.000000
s ce10.chrX              2876371 338 + 17718866 ACTCACCGGCTCCCAAGATTTGTAGTATGGCTCTACATCTAATGTGTATCTCTCACTGTAAGCAACGTAGTGCCAGAGAAGCATAGCCACAGACATTGAAAGTCCTGAA------------AATTGAACATA----TCCAGTTTTTTG------TTTCAAATCAGTAATTGTTTTACCAGCAAGGATCAGAAGAATTCCGGTGCTCATAATGAATTTTTTCGATCTATTCCAGCATCCGATGAGTCCGACAATAAAGCTCAACACGACGAAAACAATACCTGAACAAATCAAAA--TG--GGCATTAATGTCAATATTTGGCTTACTCG---CATCGTGACACCTTA--TAGTACTCTAT--TGTACAGGT
s cb4.chrX              17627118 347 - 21540570 ACTCACGGGTTCCCAAGACTTGTAGTATGGCTCCATATCCAAAGTATATCTTTCGCTGTATGCCACGTAGTGCCAAAGAAGCATGGCAACCGACATGAAGAGTCCTAAA------------TATTAAAATCAA---Accaattttatc------tttt--tccaGGTGTT-CTCTACCTGCGAGAATGAGCATGATTCCAGTGCCCACGACGAACTTCTTCGATCTGTTCCAACATCCGATGAGTCCCATAATAAAGCTCAACACGACGAAAACAATACCtgaacaaatcaaaaattggttgcATTAATGTCAATATTTGGTCAACACGGCCGATCGTGACACCTCGTTTTGTACTCTATTATGTATAGGT
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig15   371994 340 -  1794024 ACTTACTGGCTCCCAAGATTGGTAGTATGGTTCAACATTAAGAGTGTATCTCTCACTGTAAGCAACATAATGCCAGAAAAGCATAGCGATCGACATGGAAAGTGCTGAAACAAAGTTCCATTATTCAGATCAAAAGATCAATTG-------------------AAGGTTT-CAATACCTGCTAAGATCATAAGGATTCCTGTGCCCATAATGAACTTTTTCGATCTGTTCCAGCATCCAATGAGTCCCATAATGAAGCTCAACACGACGAAAACAATACCtgaacaaatcaaaa--tg--tgTATTAATGTCAATATTTGGTCAACTCG---GATCGTGACACCTCG--TTGTACTCTAT--TGTACAGGT
i caeRem4.Crem_Contig15 C 0 I 135
s caeSp111.Scaffold582    379156 330 +   484378 ACTTACTGGTTCCCAAGACTTGTAGTATGGCTCAACATCAAGGGTGTATCGCTCACTGTATGCAACATAATGCCACAAAAGCATTGCGACCGACATGAAAAGTCCTGGA-----------------AAAATGG---CTCGtttttttG------TACC--CTCGATTGTT-ACAAACCAGCGAGAATCAGAAGGATTCCAGTGCTCATGATGCA-TTTTTCGATCTGTTCCAACATCCGAGTAGTCCAACCATAAAGCTCAACACGACGAAAACAATACCTGAACAAATCAAAA--TG--TGCATTAATGTCAATATTTGAATTACTCG---GATCGTGACACCTCG--TTGTACTCTAT--TGTACAGGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3535434 286 -  4147112 acTCACTGGCTCCCAAGACTTGTAATGTGGCTCCATATCAAGGATGTATCTTTCACTGTAAGATACGTAGTGCCAAAGAAGCATTGCCACTGACATCGAAAGT-------------------------------------------------------------------------CCAgccaaaagaagaaggattCCTGTGCTCATGATGAACTTCCTCGATCTGTTCCAGCATCCAAAAAGTCCAACAATGAAGCTCAACACGACGAAAACAATACCTGAACAAATC-AAA--TG--TGCATTAATGTCAATATTTGGCCTACTCG---GATCGTGACACCTCT--TTATACTCTAT--TGTACAGGT
i caePb3.Scfld02_0      C 0 I 133
s caeJap4.Scaffold17990   119086 332 -   357190 ACTCACCGGCTCCCAAGATCTGTAGTACGGTTCCATGTCCAAAGTGTATCGCTCAGCATAAGCAACATAGTGCCACATGAGCATAGCCAGAGACATGAAGAGTCctgaa---------------------------aatacttttttcatgtatttttttttcccaaattatCTCACCGGCAATCATGAGCAAAATTCCAGTAACCATAATGCATCTCTTCGATCTGTTCCAGCACCCGAAGAGCCCGACAATGAAGCTGAACACGACGAAAACAATACCTGAACAAATC-AAA--TG--TGCATTAATGTCAATATTTGTCTCACTTG---AATCGTGACACTTTA--TTGTACTCTAT--TGAACAGGT
i caeJap4.Scaffold17990 T 26666 C 0

a score=-1459.000000
s ce10.chrX              2876709 16 + 17718866 ATTTGTATGGAT-------------TGCG
s cb4.chrX              17627494 16 - 21540570 AGTCATATTGAT-------------GGCT
i cb4.chrX              I 29 C 0
s caeSp111.Scaffold582    379486 26 +   484378 ---TATTCTGATATATACTACGAAAAGCC
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   119418 17 -   357190 ---AATTCTGATATAT---------TGTG
i caeJap4.Scaffold17990 C 0 I 55
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e caeRem4.Crem_Contig15   372334 135 -  1794024 I

a score=-579.000000
s ce10.chrX              2876725 17 + 17718866 TCTAATCTATTGCTAAT------------
s cb4.chrX              17627510 17 - 21540570 TATAATGCATTGTTAGG------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    379512 29 +   484378 TATAAAACACTGTGTAATCGATTGCTAAT
i caeSp111.Scaffold582  C 0 I 76
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e caeJap4.Scaffold17990   119435 55 -   357190 I
e caeRem4.Crem_Contig15   372334 135 -  1794024 I

a score=185.000000
s ce10.chrX              2876742 16 + 17718866 AAAAG--TTAATATACAT
s cb4.chrX              17627527 18 - 21540570 AATAGGAGGAATAGACAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e caeJap4.Scaffold17990   119435 55 -   357190 I
e caeSp111.Scaffold582    379541 76 +   484378 I
e caeRem4.Crem_Contig15   372334 135 -  1794024 I

a score=0.000000
s ce10.chrX              2876758 610 + 17718866  
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e caeJap4.Scaffold17990   119435  55 -   357190 I
e cb4.chrX              17627545   0 - 21540570 C
e caeSp111.Scaffold582    379541  76 +   484378 I
e caeRem4.Crem_Contig15   372334 135 -  1794024 I

a score=91.000000
s ce10.chrX              2877368 1 + 17718866 T
s caeJap4.Scaffold17990   119490 1 -   357190 T
i caeJap4.Scaffold17990 I 55 C 0
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e cb4.chrX              17627545 0 - 21540570 C
e caeSp111.Scaffold582    379541 76 +   484378 I
e caeRem4.Crem_Contig15   372334 135 -  1794024 I

a score=-160.000000
s ce10.chrX              2877369 5 + 17718866 -AACAA
s caeRem4.Crem_Contig15   372469 5 -  1794024 -aagaa
i caeRem4.Crem_Contig15 I 135 C 0
s caeJap4.Scaffold17990   119491 5 -   357190 GAAGA-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3535720 133 -  4147112 I
e cb4.chrX              17627545 0 - 21540570 C
e caeSp111.Scaffold582    379541 76 +   484378 I

a score=69.000000
s ce10.chrX              2877374 3 + 17718866 CTC
s caeRem4.Crem_Contig15   372474 3 -  1794024 att
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3535853 3 -  4147112 CTT
i caePb3.Scfld02_0      I 133 C 0
s caeJap4.Scaffold17990   119496 3 -   357190 CGT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17627545 0 - 21540570 C
e caeSp111.Scaffold582    379541 76 +   484378 I

a score=150857.000000
s ce10.chrX              2877377 235 + 17718866 ACCAACAACATAAGCAATGATAGTTGCTTTTGCAGCATAATGACGGTAAAGTTCATTGTTTGAGAAGTGCTCCTTTTTAGACTCTGGAACCATGAACTCGTTGCTCCAGATGCACGGAGAGCCCATTTTGCTGAAGCTTCCAACATCTGAAAACTGC--------------------CCATTTTTCTGATTTTCC--GCTAAAGAAAATCTATT------------------------------------------------GTT-----TCA-ACAATTACTTTTATTGGTGTTAACCTTGGGGGGTTTT--
s cb4.chrX              17627545 256 - 21540570 ACCAACAACATATGCGACAATGGTTGCCTTGGCAGCATAATGACGGTAGAGCTCGTTGGTTGTGAAGTGCTCCTTCTTGGAATCTGGCACCATGAATTCATTATTCCAGATACAGATTGAGCCAACTTTGTTGAAGCTTCCAATATCTGgaaagtta------------------------atttttgatttttttgaattcagttcCTGAGATTT------------------------AATTTCTGCCAATTCGTGACACCTT-GTATGCG-ACAATCAATTTTATTGGTTTCGACCTTGG-----CTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   372477 255 -  1794024 accAATGAGGTAACCGACGATGGTGGTCTTAGCGGCATAATGACGGTAGAGTTCGTTATTCGAGAAATGTTCCTTTTTGGATTCAGGAACCATGAAATCATTATTCCATATGCAGATTGATCCAGCCTTGATGAAACTTCcgatatctggaaaaaaa-----------------------gatttttgatctctC--AATCCATTACTTCTATTCT------------------------AATTCTTGCCAATTCGTGACACCTTCGCCTTCG-ACAATCAATTTTATTGGTTTTGACCTTGG------TT--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    379617 238 +   484378 ACCAACGAAATAGGCGACAATGACTGCTTTGGCTGCATAGTGACGGTAGAGTTCGTTTGTGGAGAAGTGTTCTTTCTTAGACTCTTGAACCATGAAATCATTGCTCCAGATGCATGGAGATCCCATTTTGTTGAAACTTCCAATATCTGTAAATCAT-----------------------GGTGTTTAATCCTCT--GTTTTC--ATTTGCCCCCT------------------------AATTCT----------TGACACTTT-----TTG-GCAATCAATTTTATTGGTTCTGACCTTGG------CT--
i caeSp111.Scaffold582  I 76 C 0
s caePb3.Scfld02_0       3535856 251 -  4147112 ACCAACAACATAGGCTACAATAGTTGCCTTGGCAGCATAATGACGGTATAGTTCATTGCTTGTGAAGTGCTCTTTCTTGGAGTCTTGAACCATGAAATCGTTGCTCCAGATGCAAGGAGATCCCATTTTGTTGAAGCTTCCAATGTCTGAAAACAGT-----------------------GATTTCTGATCTTCC--ATTTCCTTATTTCTATTCT------------------------AATTCCCCCAATTTTGTGACACCTT-----CTGAACAATcaattttattggttttgacCTTGG------TT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   119499 300 -   357190 ACCAAGCACGTAGGCAACAATGGTCCCCTCGGCAGCATAGTGGCGGTACGTTTCGTTGGTAGTAAAGTGCTCTTTCTTAGACTCTGGCACCATGAACTCGTTGTTCCAGATGCACGGCGAGCCCATTTTGTTGAAGCTTCCAATATCTGTGAAAAATAAGCAATTTCTTTTCATGTATTTGTTTGTTGTTCCCCT--TTCAAATTAATTCAATTATTTGGGGGGTGGCATTCTTCTCACGAGTCACTTCGAATTTGTGACACCTT-G---TCG-ACAATCAATTTTATTGGTTTCGACCTTGG------TTTT
i caeJap4.Scaffold17990 C 0 I 38

a score=-1538.000000
s ce10.chrX              2877612 35 + 17718866 ATT--TTATTGTTAGTCACTTGTAAAAAGTAACCACG
s cb4.chrX              17627801 11 - 21540570 GTTACTTTTG--------------------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   372732  9 -  1794024 GTT--TTCTA--------------------------G
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    379855  9 +   484378 GCT--TTCTG--------------------------G
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3536107  9 -  4147112 GTT--TTCTG--------------------------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   119799 38 -   357190 I

a score=56397.000000
s ce10.chrX              2877647 101 + 17718866 TAACAAGTAACTGGTAACAAAATCGAGTCACACACATACACACACACACAAAGACACTTCATTC-TCCTGTTTTCGTTCAACATGACTGGTAAGGTC--GTCAA
s cb4.chrX              17627812  74 - 21540570 TAACTGGTAACC-----CAAACTTG--------------------ACACAAAGGCACTTCATTCTTCTTGTTTTGGATTGA---GACTGGTAAGGTC--GCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   372741  98 -  1794024 CAACAAGTAACTGGTAACAAAATTGAGTCA---acccacacacacacacaaaggCACTTCATTC-ACTTGTTTTGGTACGACATGACTGGTAAGGTC--GCCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    379864  93 +   484378 TAACAAGTAACAGGTAACCAAATTGAGTCA---ACCCCCA-----ACACAAAGACACTTCATTC-ACTTGTTTAGGTTTGATTTGACTTGTAAGGTC--GCCAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3536116  93 -  4147112 TAACAAGTAACTGGTAACAAAATTGAGTCA---ACCTCAC-----ACACAAAGACACTTCATTC-ACTTGTTTTGGTTCGACGTGACTAGTAAGGTC--GCCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   119837  86 -   357190 TAACTAACAACTGGTAACATAG-CAAGTC----------------ACACAAAGACACTTCATTT-ACTTGTTTTGGTTCCCGAGGTTCGGCAACATTAGGTTAA
i caeJap4.Scaffold17990 I 38 I 25

a score=12142.000000
s ce10.chrX              2877748 25 + 17718866 AAACGATTAGCACTTTTTTTTTTGG
s cb4.chrX              17627886 20 - 21540570 AGACGATTAGCACTTTTTT-----G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   372839 19 -  1794024 AGACGATTagcactttttt------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    379957 19 +   484378 AGACGATTAGCACTTTTTT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3536209 18 -  4147112 AGACGATTAGCACTTTTT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   119923 25 -   357190 I

a score=-5729.000000
s ce10.chrX              2877773 15 + 17718866 GATTAGACATTTGTA--------
s cb4.chrX              17627906 15 - 21540570 GTcgacaaacttttt--------
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig15   372858 12 -  1794024 ---gagaaacttctt--------
i caeRem4.Crem_Contig15 C 0 I 30
s caeSp111.Scaffold582    379976 11 +   484378 --CCCCAATCTTT----------
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3536227 11 -  4147112 ----AGAGTCttttt--------
i caePb3.Scfld02_0      C 0 I 62
s caeJap4.Scaffold17990   119948 23 -   357190 GACTCGACTCGCCTCGACCTCTa
i caeJap4.Scaffold17990 I 25 C 0

a score=-11990.000000
s ce10.chrX              2877788 30 + 17718866 GTATAATACAAAT------------------AAGTT---CAGAAT-GCGTAA-------
s cb4.chrX              17627970 21 - 21540570 -------------------------------aaagtttacaTAGGTTTACAA-------
i cb4.chrX              I 49 I 3
s caeRem4.Crem_Contig15   372900 20 -  1794024 -------------------------------ACGACTAACAGCAA-TGGCAA-------
i caeRem4.Crem_Contig15 I 30 I 3
s caeSp111.Scaffold582    379993 45 +   484378 ------TACCAATTCGGATTAGCGAAGATCAAAGTTTTACGACAA-TGGTAA-------
i caeSp111.Scaffold582  I 6 I 3
s caeJap4.Scaffold17990   119971 43 -   357190 -------------gcaagaaagaaagaaagaaagcttAACGATGT---ATAATGCATGA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3536238 62 -  4147112 I

a score=353917.000000
s ce10.chrX              2877818 773 + 17718866  
s cb4.chrX              17627994 855 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   372923 886 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    380041 873 +   484378  
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3536300 855 -  4147112  
i caePb3.Scfld02_0      I 62 C 0
s caeJap4.Scaffold17990   120014 863 -   357190  
i caeJap4.Scaffold17990 C 0 I 321

a score=49551.000000
s ce10.chrX              2878591 120 + 17718866 TCGAAAACAGACAA-------------------------GTCGAAAC--ATGTT-GAATTCCAATTTACCGGGACAAAAAA-TGTCGAATTGATTAGATGTTGTAGGATGGAACAGGAAATTGAGAAGGGG---------------GAAAAAAATGGACATCTG
s cb4.chrX              17628849 144 - 21540570 TTGAAAACAGACAAACTAAGAGGGGAGGTAgtggaaaatgttgaaattcgtGTTAGAATTCCAATTTAAC-GGGCAAAAAATTGACGGAATGATTGGAAGTTACAGAA---AACAGGAATTTCGAG-----------GGAGGCAGAAAAAA-----GGCAGATG
i cb4.chrX              C 0 I 137
s caeRem4.Crem_Contig15   373809 151 -  1794024 ttgaaaacagacaatccgaaaaggaaagaa--aaaagatgttgAA----TTGTT-GAATTCCAATTTAAC-GGacaaaaaaatgacgaaatgattgaaagttacag-----aacaggaatttgaggaagaagaaaatggaaactgaaaaaaatatggacAACTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    380914 134 +   484378 ttgaaaacagacAAGCCAGAAAAGG-------GAAAGATGTTGAA----ATGTT-GAATTCCAATTTAAC-Ggacaaaaaa-tgacggaATGATTGAAAGTTACAG-----AACAGGAATTTgagaatgga------agag-----aaaatatggAGACAACTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537155 124 -  4147112 tcgaaAACAGAC----------------------AAGATGTTGAA----TTGTT-GAATTCCAATTTAAC-GGACAAAAAA-TGACGGGATGATTGAAAGTTACAG-----AACAGGAATtcgaggaagaa------gaaattggcaaaaaatatGGACAACTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   120877 321 -   357190 I

a score=-9461.000000
s ce10.chrX              2878711 149 + 17718866 TCAAC-----TTTTCGTGTTTCAGAAAACGGCTAAATTAG--------AAAGTGG-------GAATGT----TGGAAATGAT------TTCTTAGAAAAAATTTTTTAAAACATTACTGTGAAATTCTAT-AGATTTTTAAATGCACTGATGCCTGGAAAAATGTGAGCTT-------TCTTCATTT
s caeRem4.Crem_Contig15   373960 141 -  1794024 TCAATCACAGTATCTGTAT----GAGaaggg--aaaatgaaatttatcccaactgtttcaaagaacCAAATTAGCGAACAATGgaagatattcaaaaaaaattgatcaaaaaa------tgaattttaatcaaatt------------------tgtAAAACTACTTCATT----------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    381048  74 +   484378 TCAATCACAATTGTTGTAT----GAGAACGG--AGAATGG--------CAAATTG-------GAATcta---agaaaatgatg-------------------------------------gaa--------aaact---------------------aaaatta-----------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537279 126 -  4147112 TCAATCACAATTGTTGTAT----GGGAATGT--AAATTAG--------CGAATTG-------CAATCCA---AGGAAATGATGGTTATTTTATGAACAATATtggc--aaaat------tgaa--------aaatttccaaa------------tgaaaagttatgaaaatgtaaatg---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   120877 321 -   357190 I
e cb4.chrX              17628993 137 - 21540570 I

a score=-38447.000000
s ce10.chrX              2878860 166 + 17718866 AGAAGCACTAAATATGGATTCTGTGTGttttaaatgtataaacctaaa---atgtgctca-----aacaaaacaaattttgtaatgaaacttctcaaaagttttttcaaaaaaatttcaatagcggctGGGCTCGTTTCTAAAGTTTTAAGcacttttccgtgttagaaattgc
s cb4.chrX              17629130 135 - 21540570 AGAAGCGCTAATTA----------AA-CACAGAACA------tcga-----tttttgtcaattttcatatATGGAGCTTGTAATTAT--CTTCCAAAAACCCTGAATA----------ATCAAAAAGCTAGCT-----CTGAAATCTAGGCACAAAAATCTAGCTTGGAATTAT
i cb4.chrX              I 137 C 0
s caeRem4.Crem_Contig15   374101 125 -  1794024 -----------------------------CTGAGTATTTTATTCTA-----CTGTTGTTTACGCGTATAAATGAATCgacaaaatataatttttgaaagaccTAATTAAAAACGTCT-ATTGAAGAAATTGCT---TCCTGAATTC-----------ATCGATTTCgaaattga
i caeRem4.Crem_Contig15 C 0 I 59
s caeSp111.Scaffold582    381122  50 +   484378 ---------------------------aattgaacGTTTTCATCTGAAG--CCACtatta-----caaaaataaa-----------------------------------------------aagatttAG-------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537405  84 -  4147112 aaaggcaaaaaCTG----------GTTAGATAAAAGTTGTTGCCGAAAATTCCTTTACTA-----CAAgaaagaacttttcaaatat--------------------------------tcgaaaaattag-------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   120877 321 -   357190 I

a score=-10251.000000
s ce10.chrX              2879026 86 + 17718866 ctttttctgaatat-catagttttttctttattttggtttatatcatgttattttgttgattaagaaacatttgtaaccggtaggaa
s cb4.chrX              17629265 39 - 21540570 -Ctacccaaaattc-------------tgaatattca--------------------------aaaaaca--------agctctgaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    381172 29 +   484378 --------GAATACgcatagtttttcttttggcttcg--------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537489 16 -  4147112 --------gaaaac-------------cGTGTATTCG--------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   120877 321 -   357190 I
e caeRem4.Crem_Contig15   374226 59 -  1794024 I

a score=-75868.000000
s ce10.chrX              2879112 329 + 17718866 aaaaaatgacaaaaactagccaaaatgtgttaccta---------tcgggtttaaatgcac--------------catgtttaacagaaattaataaaataaacaaccaa---aatgtgccattaaaaaaataattaa---aaagcggccaaaatttgagatttagctttaaaa--------aactatttttattcaaaattttgtaccgccaaatataaattcgggagcatttttgagagttttctttacgaaagtggttcttctgagcacatttttggtccatacTTCTGAATAACTTTGAACAACTCATTTTA--------------TGT--ATTTTACAGTTAGAACTAGTCAATTAATAAT-----------TATAAATCAATAAAAT
s cb4.chrX              17629304 233 - 21540570 atttagTCACAAAA-----------------ATCTAGCCCGAAATTTAAGCTAAAACCCAGAGAATAAgaatttccagg---atttttttataaaattgaaatgaacCAA---GATGGATAATTCA------AATTAAACCCTAAC------------TGCTTTAATTCTCCAT--------GTCCCCGACTatc---------------------aaaacta----atttttttggatattgTGACTCATA----------TTTTGgac-------------------tcaaattttcatg---------ttcaa--------------aaa--attgc---------------taattATCCta-----------tatcatgaaa------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   374285 171 -  1794024 ---------aaaaa-----------------atcta---------cTAGTTTGAAACTGAG--------------CAGG---CATTTATTTCATAAAtgccaaaaatcaaaacaatgaTTGAAACA------GATTAG---CAAAC------------AGTATTAACTCTGCTT--------ATC-------ATG---------------------AACA------------TTTTGTTATTTGGCCAcata---------------------------------------aaaatgtaat----------ttcaa--------------ATA--GTTCC---------------ACATTATCCAA-----------TTTGAT----------
i caeRem4.Crem_Contig15 I 59 C 0
s caeSp111.Scaffold582    381201 237 +   484378 ---------------------------------------------aattttcaaaaatcaa--------------caga---aacctcattgga------aaaaaattca---gacataatcttaa------aaataa---aaaccgg--aaaa----agcatcagttttttgtcaaataTAACTTAAACTCAAA--AAGTCACAGTCCCTagtataaaa--------aaatttatggaAAGAAAACTCGAA----------TC--------------Agtcatt----taaaaatctttAG---------TTTTa----gcaatattcaaaa--atttcaaaaatagaaaca--taAGCATTGAAgc---------tttaagaaaa------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537505 260 -  4147112 ---------------------------------------------ATGAGccaaaattcaa--------------caaatataatttgctttgaatttttaacagATTGA---GA------GTTTA------GAATAT---ATACT------------AGCATTTGTTTTCGGC--------ATTTGGGCCTATA-----TTACCGTTTTTCCGATATCAgct----tacttttttgtttgaaagccTCGAG----------CTCTGGCCAA------AGTCTTTATCAGAGAATTGTCTTG---------TTTAACAGTGCAATCATCATAACTATAGCGTTGACCGAAccagtcaatttttgaagcagttttttttttcagattacacG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   120877 321 -   357190 I

a score=356749.000000
s ce10.chrX              2879441 704 + 17718866  
s cb4.chrX              17629537 689 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   374456 640 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    381438 645 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3537765 642 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   121198 723 -   357190  
i caeJap4.Scaffold17990 I 321 I 4843

a score=-468.000000
s ce10.chrX              2880145 58 + 17718866 TATGGAGTTACT----GATAAATTGCAACGAGATTGATAGTCTAGTAGGG-----GGCGAATCTGGG--------------------------
s cb4.chrX              17630226 52 - 21540570 --TGGTGTTGTT----GAGAAGTGATTA----------GAAGTGATAGAGTGGAAAAGGGATCAAGGG-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   375096 45 -  1794024 --TGGTTTTACT----GAGAAGACACT------------AACTGATATGG-----AAGGGATCAAGGG-------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    382083 69 +   484378 --TGGTCTTACTACGAAAGAG-----------------TAACTGATAAAG-----AAGGGATCAAGGGTGTGGTTCTAGGAAATGAATTTggg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3538407 73 -  4147112 --TGGTTTTACTACTAGAGGGGTGAGAA----------GAGCTGATATGG-----AAAGGATCAAGGGTGTGGttcgggaaa---aattttgg
i caePb3.Scfld02_0      C 0 I 89
e caeJap4.Scaffold17990   121921 4843 -   357190 I

a score=-27.000000
s ce10.chrX              2880203 6 + 17718866 TGTGGT
s cb4.chrX              17630278 6 - 21540570 TGTGGT
i cb4.chrX              C 0 I 1566
s caeRem4.Crem_Contig15   375141 6 -  1794024 TGTGGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    382152 2 +   484378 ---aa-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3538480 89 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I

a score=-5188.000000
s ce10.chrX              2880209 59 + 17718866 ACTGGTACTGAATGCAAAGTTATATTTCTCATTTTCCCGGAATTCAAACAGG---ATTGTAA---------------------------------
s caeRem4.Crem_Contig15   375147 94 -  1794024 -TcacggaaaaatagaaaaatgcgGGACGTAAGAATCGGGAACAGGAAAATGCAAATTGCGTCAGGAAATCAGTCAGGAATGTTAACAATGGCAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    382154 56 +   484378 ---------gaataaaaaagaacatgaGACATGTTTGTGGAATGCAAAAGT----AATGCCTCA-----------------GTTAA---------
i caeSp111.Scaffold582  C 0 I 9
e caePb3.Scfld02_0       3538480 89 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17630284 1566 - 21540570 I

a score=-6899.000000
s ce10.chrX              2880268  83 + 17718866 TAGGATT------------TAAAATTTT--------------TAAATTCTTCTGACCAGTTCTGAACAAGTCAAATAAATACATTCTAATA---------GTTCAAGAAACAC---------------GAAAA
s caeRem4.Crem_Contig15   375241 118 -  1794024 TAGAAGTacttgttttcagtgaaatggACCATTTCGAAATACAAAATTGTTGTCATTG--CCTGAAGACGTTAACGTAGAACA-TCAAACA-GAACACaacttcgagaaatttcttggGATA-----------
i caeRem4.Crem_Contig15 C 0 I 20
s caeSp111.Scaffold582    382219  85 +   484378 tgaaaat------------tacattttg--------------aaaattcttg--------------aacGAGAACCAATAAC---CGAACAAGTGAACAATTTCGAGAAACAC-----GGTATTCAACGAAAA
i caeSp111.Scaffold582  I 9 C 0
s caePb3.Scfld02_0       3538569  80 -  4147112 caagaat------------tgaaatgGT--------------AAAATTCCTG---------------ACAAAAACTAAGAAC---CAAACA-------ACTTACAAGAAACATCATAGGATGTTTA--GAAGA
i caePb3.Scfld02_0      I 89 C 0
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17630284 1566 - 21540570 I

a score=55659.000000
s ce10.chrX              2880351 228 + 17718866 -------CCATTCACAAAGTGAA-GAATTCACTTGA------------ACAG------TGGCTTACCCAACAAT--------TGTCCCCATCAT-------ATTTTAAAAACTGGTTCAGT----------GGACAACTAAACATCTTGGCAAAAACAAAAAGGGCAATAGAAAGAGCATATCCATAAAATTGAAACGTTG-------TTTTTTTTTAATGA--------AAAGATG-AAAAGGAAATTGTGAGGTCGAGCAGACCA-TAAAATACATGCCAGGTGTTAGCTATGG--------
s cb4.chrX              17631850 230 - 21540570 -------CCCCTAATAAAG-AAACGAATTCACTTGACATCATACAAGTACCGAAGACATAGCTTACCGAACAACACAACATTTGTTTCGACCCCCC-----AATTTGAAAACTGGTTCAGT---ATATGAtg-------tga------agaaa------------------agaaaagagatccATAAAAGTGTAACGGAGTGC----tttttttCATAGGC-----ATGAGGAATTCAAAAGGACATTCTGAGGCCAAGCCGACCA-TAAAATAC----CAGGTGTTA-------------GG
i cb4.chrX              I 1566 C 0
s caeRem4.Crem_Contig15   375379 240 -  1794024 -------GCCCTAATAAag-gaa-gaaaacaattgacaTAATGGTGGTAC--------TAGCTTACTGAACAAC---ACACTTGTCCCGACCTTCT------TTTTGAGAACTGGTTCGgt---atgaaata-aaaacttaa------aGGGAACACACA-------ACGGAAAGAATAGATCCATAAAAGCGTAACgg------------ttttttgagga-----a--aagaaTT-AAAAGGACATTGTGAGGTCAGACAAGCCG-TAAAATGAATGGCAGGTGTTAGCTGGGGCCGCCGGG
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    382304 245 +   484378 TGTTATTGTCCTAATAAAG-GAA-AAATTCACTTGACATC--------AC--------TAGCTTACCGAACAAC---ACATTTGTCCCGACCcccttcctttttttgaaaactggttTGAT---ATGATGtggaaaactaaa------aacgaACACACA------CAACAGAAGAATACATCCATAAAAGTGTAACGGTG-------tttaattcagaaga-----aaaaagaatg-caaAGGGCATTGTGAGGTCAGACGAAGCA-TAAAATGA-TGCCAGGTGTTAGCTGAGG--------
i caeSp111.Scaffold582  C 0 I 366
s caePb3.Scfld02_0       3538649 251 -  4147112 TGTTTTTGTCCTaacaaaa-gaa-gaattcaCTTGACATCATGGTGGTAC--------TAGCTTACCGAACAAC---A---------CGACCCC-------TTTTTGAGAACTGGTTCACTATGATGATGTGGAAAACTAAA------AGCGAACACACA-------ACCGAAAGAAAAGATCCATAAAAGTGTAACGGtgcgttgtttttttttaagaagaataagaaaaggaTTC-TAAAGGGCA-TGTGAGGTCAGACCAACCATTAAAACGA-TGCCAGGTGTTAGCTGAGG--------
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17990   121921 4843 -   357190 I

a score=2959.000000
s ce10.chrX              2880579 6 + 17718866 GGTTAC
s cb4.chrX              17632080 6 - 21540570 GGTCAC
i cb4.chrX              C 0 I 446
s caeRem4.Crem_Contig15   375619 6 -  1794024 GGTCAC
i caeRem4.Crem_Contig15 C 0 I 10
s caePb3.Scfld02_0       3538906 6 -  4147112 GGTTAC
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e caeSp111.Scaffold582    382549 366 +   484378 I

a score=-574.000000
s ce10.chrX              2880585 8 + 17718866 TCGAATTT-
s caeRem4.Crem_Contig15   375635 8 -  1794024 -TGAGATCG
i caeRem4.Crem_Contig15 I 10 C 0
s caePb3.Scfld02_0       3538912 8 -  4147112 TCTAGCTT-
i caePb3.Scfld02_0      C 0 I 2463
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632086 446 - 21540570 I
e caeSp111.Scaffold582    382549 366 +   484378 I

a score=1110.000000
s ce10.chrX              2880593 50 + 17718866 TTATTCACTCACGATCTGACAAGTATTAACGGTTTTTGGTTTTGTATATT
s caeRem4.Crem_Contig15   375643 50 -  1794024 TGATTCATAGAAGCACTATTAAGCCTCTccagttcttcattttttatatt
i caeRem4.Crem_Contig15 C 0 I 363
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632086 446 - 21540570 I
e caeSp111.Scaffold582    382549 366 +   484378 I

a score=0.000000
s ce10.chrX              2880643 2643 + 17718866  
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632086  446 - 21540570 I
e caeSp111.Scaffold582    382549  366 +   484378 I
e caeRem4.Crem_Contig15   375693  363 -  1794024 I

a score=588.000000
s ce10.chrX              2883286 27 + 17718866 gttctcctttaaAACTTGTGTTTTGTA
s caeSp111.Scaffold582    382915 24 +   484378 gttttctgTCGCAACCT---TTTTGCA
i caeSp111.Scaffold582  I 366 C 0
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632086 446 - 21540570 I
e caeRem4.Crem_Contig15   375693 363 -  1794024 I

a score=-928.000000
s ce10.chrX              2883313 15 + 17718866 AATATTGTGCATAGG--
s cb4.chrX              17632532 17 - 21540570 AATGTTGGGCGAGTATT
i cb4.chrX              I 446 C 0
s caeSp111.Scaffold582    382939 15 +   484378 ACTATAGACTGTGTT--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e caeRem4.Crem_Contig15   375693 363 -  1794024 I

a score=35674.000000
s ce10.chrX              2883328 268 + 17718866 TATGTGTAACAAAGGTC-GTGAGAACAATCATTTTTA--TTTCTTATTCACATGCGCAGCTACCGTAC----GTTTTTTTTTTGTTAATAAATGCAACT------CTATTCAT---TTTGCACC----CCCTTTATTTACTTTCATGCTCCAAAAATGTTATGAGATT--GACTTTTAAAAGGAAATGCGTTTTTGAATGTTTGGAGCATTGACCTACCGTTTCCTCTCATTTTGTTTGATTATTTCTCACGGTGTCGGTGTCA------ATGG--CAGTTTGATGAAATTCAATACT
s cb4.chrX              17632549 253 - 21540570 TGCATGCAACAAAGGGT-GTGGGAACAATGAGTTTCCGTTTTCTT-------TT---GGCTACCgtacacatttttttatttagtAAATGAATG---TTCATGTCCTATTCATGGTTGCATACTCCCTCTCAATGTTTATCTTCATGCTCCGATT-------GAGTCTGCggtat-----ttcaaatttatg------tGTTTAGAACACT-------------CCCCCATTCCCCGTAATCAATTCTCACGGTATCGGTGTCATTTAGTATTGAACACTTTAATGTAATCGAATACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   376056 242 -  1794024 TGTGTGCAACAAAAGATCGTGAGAACAATaagtttccgttttttcatTCACATG---GGCTACCGTAC--------TTTTTTAGTAAATGAATG---GT------CTGTTCATGGCCTTCAACT--TGCTCAATATTTACTTCCATGCTCCGATT--------AGTTT--GGCCC-----ACCGAATGt-tt------tatttaaattatttG----------CCTCCCGCTTCACGTAATCAATTCTCACGGTGTCGGTGTCATTTAGTTTGG--CATTTCGATGAAATCAAATACT
i caeRem4.Crem_Contig15 I 363 C 0
s caeSp111.Scaffold582    382954 236 +   484378 TGTATGCAACAAAGGTC-GTGAGAACAATCAGCTTCCGTTGCTTATTCACCGTG---TGCTACCGTAC--------TTTTTTGGTTAATGAATG---GC------CTTTTTATGTTCCCTCATT------CAATATTTACCTCCATGCTCCGAGT--------AGTTT--GGCAC---AGAGCAAatga-tt------tattcaaattattgg----------CCACCAGTTTAACGTAATCATTTCTCACGGTATCGATGTCA---GGCATTG--CATTTAAAGGAAATATGATCCT
i caeSp111.Scaffold582  C 0 I 703
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I

a score=300.000000
s ce10.chrX              2883596 1 + 17718866 G
s cb4.chrX              17632802 1 - 21540570 G
i cb4.chrX              C 0 I 2398
s caeRem4.Crem_Contig15   376298 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 I 312
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e caeSp111.Scaffold582    383190 703 +   484378 I

a score=0.000000
s ce10.chrX              2883597 1071 + 17718866  
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I
e caeSp111.Scaffold582    383190  703 +   484378 I
e caeRem4.Crem_Contig15   376299  312 -  1794024 I

a score=91.000000
s ce10.chrX              2884668 1 + 17718866 T
s caeRem4.Crem_Contig15   376611 1 -  1794024 T
i caeRem4.Crem_Contig15 I 312 C 0
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I
e caeSp111.Scaffold582    383190 703 +   484378 I

a score=12970.000000
s ce10.chrX              2884669 294 + 17718866 TGCAAATGTGCTCCAATGAAATTACCAT-------TTGCACTACTGTTGTGTTATCTACGTAACCGTTGT-------GGTTCTTTGGA-GTGGTGTGTCTGCGCGCGCACACCTTCGCCTCTCACACCATTTTCACCCCACTCATCTTTGTTACTGCACACCCCTGATTTGTCGTCTTTCCATTTTTCGTTCA----CCTCTTGACGGATTGATGCTAATTTTATTGTACCGAGCTGTTTAGAATTCAACTTTTTCAATAGTCCTAAAGCT----TTATATCTTGCCAGGTTGCCATATTTT--CT--------TATTTTATGATTT--------
s caeRem4.Crem_Contig15   376612 262 -  1794024 TGCAACCTCGCTCTATGGAGACTACCGTTCCACCATTTTCCCAC--------------CACAACCGATATTTGGCGAAGTATTTTTGT-GTGTGGTTT------GCGCATACCTCCAC--CTCTCACCATTTGCA-CCCACTCATTTTCGTCATTGTGCC----------GTCTTATTTCCACTTATCCCTCT-TGGTTTCTTAACGGATTAATgctaattttattgt-------ttttctggGTT---CTCTTTC-----TCCGCCGACT----TTCGTTCTTAC---GTTAACACATTTGAATT--------TATTATCTGTCTT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    383893 261 +   484378 TGCAAATGTGCCCTGTAGTGACTACCAT-------TTGCACCAT--------------CACAAATGGCGTC------ACTACATTTGTCGTTGAGTCT------GCGTATACCTCTAC--CTCACACCATTTGCA-CCCACTCATCTTAGTTATTTCGCC-----------TCTTATTCCTACTTACCCCTCTCTGGTTTCTTAACGGATTAATGCAAATTTTATCGT-------TTCTTGGCATT-----------------TGCCGACCGCGGTTGTTTCTTTC---GTTAACGCGTTTGAATTTTAAGTTCTGTTTTCTGGTTTTATGTTTT
i caeSp111.Scaffold582  I 703 I 83
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I

a score=-614.000000
s ce10.chrX              2884963 126 + 17718866 TCTCAGCTATCTAAAATGCGGTACTTGTGAAAGTATACCTGGATTTAAAATATTAATCATTTTGAAAATTTTACGTAATTATGTTCTATACTATGTCCATAAGGATTAATGTTTTTCTAAACCTAA
s caeRem4.Crem_Contig15   376874  87 -  1794024 TC-CGACTTTTTA--------------------TGTTCTTACATTTTG---------CCATTCGACAGCTTTTTGTAA----GTTGGGCAATATATCCA-----ATCGGTGTTTCTATATACACCA
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3538920 2463 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I
e caeSp111.Scaffold582    384154  83 +   484378 I

a score=-5236.000000
s ce10.chrX              2885089 123 + 17718866 GAATACAAATCAATTTCACGTTTTGTTTAAATTGTAATTTTTAAAAGAAATGAATGGAAAACGTATTGAAACATATTTTTGAGCTAGGTATATTACACAAGTACCTAAAATAGAT------ACATGTTT
s caeRem4.Crem_Contig15   376961  36 -  1794024 GAATAGACGTC---ATC-CATTCCTTTT---CTC-------------------------------GTGGTACAT-------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3541383 103 -  4147112 GAATTCAAATC---TTTACATTgtgttt---ttccagttttta--------------------tgTTCGtacattttccaaactttaGTGTGTAACTTGACCAACTAAAATCGGTGACACCAAATGTTT
i caePb3.Scfld02_0      I 2463 I 35
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I
e caeSp111.Scaffold582    384154  83 +   484378 I

a score=0.000000
s ce10.chrX              2885212 34 + 17718866 CGTCACAAAATAAGGAGCCCGTCAGCTAAATCTT
e caePb3.Scfld02_0       3541486 35 -  4147112 I
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I
e caeSp111.Scaffold582    384154 83 +   484378 I
e caeRem4.Crem_Contig15   376997  0 -  1794024 C

a score=585.000000
s ce10.chrX              2885246 24 + 17718866 ACTTT----TCGGTTTTCTTCTACCCAA
s caeRem4.Crem_Contig15   376997  6 -  1794024 ----------------------ACCCAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    384237 28 +   484378 ACTTTAGCACGCTTGGTCTTATACCCAG
i caeSp111.Scaffold582  I 83 C 0
s caePb3.Scfld02_0       3541521 24 -  4147112 gcttt----tctttcttcttataCCGAG
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold17990   121921 4843 -   357190 I
e cb4.chrX              17632803 2398 - 21540570 I

a score=4096.000000
s ce10.chrX              2885270 8 + 17718866 ATCCGCTC
s caeRem4.Crem_Contig15   377003 8 -  1794024 ATACGCTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    384265 8 +   484378 ATACGCTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3541545 8 -  4147112 ATATGCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   126764 8 -   357190 ATACACGC
i caeJap4.Scaffold17990 I 4843 C 0
e cb4.chrX              17632803 2398 - 21540570 I

a score=376176.000000
s ce10.chrX              2885278 746 + 17718866  
s cb4.chrX              17635201 769 - 21540570  
i cb4.chrX              I 2398 C 0
s caeRem4.Crem_Contig15   377011 744 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    384273 723 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3541553 728 -  4147112  
i caePb3.Scfld02_0      C 0 I 106
s caeJap4.Scaffold17990   126772 767 -   357190  
i caeJap4.Scaffold17990 C 0 I 189

a score=-4115.000000
s ce10.chrX              2886024 31 + 17718866 CCTTTTTT--TTGAAGATACATTTTAAAA------TGAA
s cb4.chrX              17635970 22 - 21540570 tattatta--tt---tggatttttaaa------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   377755 30 -  1794024 aatttttagttt---tgtagGCTTCAAAG------TGAA
i caeRem4.Crem_Contig15 C 0 I 344
s caeSp111.Scaffold582    384996 35 +   484378 --ttttcaattt--atatAAACCTAATAGACACTCTGAG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3542281 106 -  4147112 I
e caeJap4.Scaffold17990   127539 189 -   357190 I

a score=717.000000
s ce10.chrX              2886055 7 + 17718866 ACTCAAt
s cb4.chrX              17635992 3 - 21540570 ----aat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    385031 7 +   484378 ACTCAGT
i caeSp111.Scaffold582  C 0 I 241
e caePb3.Scfld02_0       3542281 106 -  4147112 I
e caeJap4.Scaffold17990   127539 189 -   357190 I
e caeRem4.Crem_Contig15   377785 344 -  1794024 I

a score=-1451.000000
s ce10.chrX              2886062 215 + 17718866 taaatgaggagtaacggctctgggtaccaatatgtgctcaaaatgaacacattttttttgtaatgaaacttctcaacagtgttcaaaatgtttttagtcggtttaaaatttaaagaaaGGGTTAATTTTTTCACATTTTGAGCAGGCAATTTTTATgccagtaggtaaccaattcaggtaatttttgattatctattcgcttaaaaagttcctta
s cb4.chrX              17635995 130 - 21540570 tagttagAGAGAAATGGGTTTTCCTATC---------------TTATCAAACTTCGTTTG-------AGTCTCAAACGGAGTTCCAAACCTCT-------------------------------ATCTTATCCC-TTACAAACATACAAGTGCTACGGTA----------AATTCAGAAA-----------------CACCTG----GTTCCTTA
i cb4.chrX              C 0 I 70
e caePb3.Scfld02_0       3542281 106 -  4147112 I
e caeJap4.Scaffold17990   127539 189 -   357190 I
e caeSp111.Scaffold582    385038 241 +   484378 I
e caeRem4.Crem_Contig15   377785 344 -  1794024 I

a score=0.000000
s ce10.chrX              2886277 520 + 17718866  
e caePb3.Scfld02_0       3542281 106 -  4147112 I
e caeJap4.Scaffold17990   127539 189 -   357190 I
e cb4.chrX              17636125  70 - 21540570 I
e caeSp111.Scaffold582    385038 241 +   484378 I
e caeRem4.Crem_Contig15   377785 344 -  1794024 I

a score=390.000000
s ce10.chrX              2886797 20 + 17718866 TCTATTTTTGAGTACATCTA
s caeRem4.Crem_Contig15   378129 20 -  1794024 TCAAATCCTAAATAAACCTC
i caeRem4.Crem_Contig15 I 344 C 0
e caePb3.Scfld02_0       3542281 106 -  4147112 I
e caeJap4.Scaffold17990   127539 189 -   357190 I
e cb4.chrX              17636125 70 - 21540570 I
e caeSp111.Scaffold582    385038 241 +   484378 I

a score=-711.000000
s ce10.chrX              2886817 3 + 17718866 TAA-
s caeRem4.Crem_Contig15   378149 3 -  1794024 TTA-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3542387 3 -  4147112 -tat
i caePb3.Scfld02_0      I 106 C 0
e caeJap4.Scaffold17990   127539 189 -   357190 I
e cb4.chrX              17636125 70 - 21540570 I
e caeSp111.Scaffold582    385038 241 +   484378 I

a score=546.000000
s ce10.chrX              2886820 1 + 17718866 T
s caeRem4.Crem_Contig15   378152 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    385279 1 +   484378 T
i caeSp111.Scaffold582  I 241 C 0
s caePb3.Scfld02_0       3542390 1 -  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   127539 189 -   357190 I
e cb4.chrX              17636125 70 - 21540570 I

a score=280.000000
s ce10.chrX              2886821 2 + 17718866 TC
s cb4.chrX              17636195 1 - 21540570 -T
i cb4.chrX              I 70 C 0
s caeRem4.Crem_Contig15   378156 1 -  1794024 -C
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    385280 2 +   484378 TT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3542391 2 -  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   127539 189 -   357190 I

a score=121845.000000
s ce10.chrX              2886823 147 + 17718866 ATTTGCAGGGCCAGAAGATTGCACCACCTAACGAAGACTGGGCAGACAACACCACCGTGCTCACTGGAATGACGACGGATTCTTTCACAATGGAAGAAAAAGTGATTTATACCCCACCAATTGGACGTGTCATAGGAAGACGGTAAA
s cb4.chrX              17636196 147 - 21540570 CATTTCAGGGTCAGAAGATAGCTCCACCGAACGAGGACTGGGCTGATAACACCACAGTACTAACTGGTATGACCACCGACTCTTACACAATGGAAGAGAAGGTTTTGTACGCGCCACCGATGAGTCGAGTTGTTGGAAGAAAGTGAG
i cb4.chrX              C 0 I 370
s caeRem4.Crem_Contig15   378157 146 -  1794024 AATTTCAGGGTCAGAAAATTGCACCACCAAATGAAGATTGGGCAGACAACACTACAGTACTCACTGGTATGACAACTGATTCTTACAcgatggaagaaaaaatgatttaccaGGCACCAATGGGACGAGTGATGGGTCGAAGgtaa-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    385282 147 +   484378 CTTCACAGGGTCAGAAAGTAGCTCCACCAAACGAAGACTGGGCAGACAACACAACCGTTCTCACTGGAATGACAACTGATTCCTATACAATGgacgaaaaaattgtttattcaCCACCGATTGGACGTGTAATGGGAAGGAGGTAAA
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3542393 147 -  4147112 ctttgtaGGGGCAGAAGATTGCACCACCAAACGAAGACTGGGCAGACAATACTACAGTTCTCACTGGAATGACAACAGACTCATACACAATGGATGAGAAAATCATTTATACACCACCAATTGGCCGTGTGATGGGACGAAGGTGAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   127728 147 -   357190 ATTTGGAGGGCCAAAAATTGCCACCACCAACCGACGACTGGGCAGACAACACTACAGTCCTGACTGGAATGACTACGGACTCTTTCACTATGGACGAAAAAATGATTTATACGGCACCAATCGGACGCGTTGTTGGTAGAAGGTAAT
i caeJap4.Scaffold17990 I 189 C 0

a score=360978.000000
s ce10.chrX              2886970 456 + 17718866 TGTTC------TTTTTTTCTAATTTCACT--------------TTTTATAACTATTG---------AAATTCAGGTGCTCTAGGTTTGTCTGGCTGTTGGCCTCGTCGTTACTTTGCATTATATCGGTGGTCAGTGCGCCGATAATGTGTTCATTGCCTATAATCGCACCACGTTTCGGCTTCAGCATGCCGGCAATTCAATGTGACGTGAGTATTTCGAAAA---CCAATTATATCGCATTAAAAATATAATGTATTGCAGGTCGATTGTGAAGGACTCCTGTTTTTAATGGCAATCAAAACAATCTTTTTGGTAATTGCAATTGGAGTTCTTTATTGGAGGAAAGCCATGGCAGACATGCCCAGGTTGTACTTTGTACGAGCTGCGCTTACATTTTTAGTCATGTTTATCCTGTTCGCGTTTTGGCTCTTTTACATTGTCAGGATAATGTTTGAAAGATACGACAACTACAAGTACATCGTAGGTT
s cb4.chrX              17636713 477 - 21540570 tttca------taattttttgac--caCT-ACTGTATTTAAAATCCTTCAAATCTATAAATTCGTTCATTTCAGATGCTCTCGTTTTGTATGGCTCCTTGCATCCACTCTCCTATGCATTATATCCGTGGTCAGCGCGCCGATAATGTCCTCGCTGCCAATTATCGCTCCACAGTTTGGCTTCAGCATGCCGGCAATTCAATGTGACGTGAGTAGTAGTGCCAATTTCAATTGAAGCGAATT--AATCGTGATGGATTGCAGGTCGATTGTGAAGGTCTTTTATTTTTAATGGCTATTAAAACGATTTTCCTGGTGATTGCAATTGGAGTGCTCTACTGGAGGAAGGCCATGGCGGATATGCCAAGATTGTATTTCGTGAGAGCAGCTTTGACTTTTTTGGTCATGTTCATTTTGTTCGCTTTTTGGCTATTCTACATTGTCAGAATAATGTTTGAAAGATACGACAACTACAAGTATATCGTGAGTT
i cb4.chrX              I 370 C 0
s caeRem4.Crem_Contig15   378303 456 -  1794024 tttct------aatttctgtGAC--------------------TTTTATAtatcttgaaatttg--aatttcaggtgCACTCGATTTGTTTGGCTGCTGGCTTCGTCACTTCTATGCATTATATCGGTGGTCAGCGCTCCGATAATGTCCTCGCTGCCAATTATCGCACCACAGTTTGGCTTCAGCATGCCGGCAATTCAATGTGACGTGAGTAGTTGGGAAA---CCAATTGAAgcgaatt-aaaaaatgatttattgcAGGTCGATTGTGAAGGTCTCCTGTTCCTGATGGCAatcaaaacaatatttttggtAATTGCAATTGGCGTTCTTTATTGGAGAAAAGCAATGGCTGACATGCCAAGGTTATACTTTGTACGTGCAGCACTAACCTTCTTGGTAATGTTCATCCTGTTTGCATTCTGGCTTTTCTACATTGTCAGAATAATGTTGGAAAGATACGACAACTACAAGTAcattgtaagtt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    385430 457 +   484378 AATCATTATTCATATACAATCAT--CATTCATAATGT------CTCTA------------------CTCTTCAGGTGCTCCCGATTAGTATGGCTGTTGGCTTCCTCGATCCTATGCATTTTATCGGTGGTCAGCGCTCCGATAATGTGTTCATTGCCAATTATCGCACCACAGGTTGGCTTCAGCATGCCGCCAATTCAATGTGACGTGAGTACTTGAAAT----CGAGTCAAATCGAATT-AAAACATGATGGATTGTAGGTCGATTGTGAGGGTCTCCTGTTCTTGATGGccatcaaaacaattttcctGGTAATTGCAATCGGAGTGCTCTACTGGAGAAAAGCAATGGCAGATATGCCAAGACTGTACTTTGCAAGAGCAGCACTCACGTTTCTAGTGATGTTTATTCTGTTTGCCTTTTGGCTATTCTACATTGCCAGAATAATGTTTGAAAGATACGACAACTACAAATATATTGTGAGTg
i caeSp111.Scaffold582  I 1 I 3
s caePb3.Scfld02_0       3542541 453 -  4147112 TCTCA------ATCTGTTCTTAA--CACT-ATAGTGT---AAATCCTA------------------TCTTTCAGATGTTCTCGGTTTGTTTGGCTGTTGGCATCCTCACTTTTATGTATTATATCGGTGGTCAGCGCCCCGATAATGTGTTCATTGCCAATTATCGCCCCACAGGTTGGCTTCAGCATGCCGCCAATTCAATGTGACGTGAGTgctttgaat----caaattgaagcGAATT-AAAATATGATGGATTGCAGGTCGATTGTGAAGGACTTCTGTTCCTCATGGCaatcaaaacaatatttttagtAATTGCTATTGGAGTTCTTTATTGGAGGAAGGCGATGGCAGATATGCCACGACTCTACTTTGCAAGAGCAGCACTCACATTTTTAGTGATGTTCATCCTTTTCGCTTTCTGGCTGTTCTATATTGTCAGGATAATGTTTGAAAGATACGACAACTACAAATATATAGTGagta
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   127875 453 -   357190 ------------------------TTATTCGCTATAC---AAATGCTATGCATATCTCTGTCAA--CATTTCAGATGCTCTCGCCTCGTCTGGCTGCTCGCCTCTTCACTACTCTGCGTCATCTCGGTGGTCAGCGCTCCAATCATGTGTTCACTGCCAATTATCGCGCCGCATTTTGGCTTTAGCATGCCAGCAATTCAATGTGACGTGAGTGTAATGAAA----TGAAAACTGACGgatt--gatttgatttgattgcAGGTGGATTGTGAAGGATTATTGTTCTTGATGGCGGTTAAAACTGTGTTTTTGGTGATTGCGATTGGAGTGCTTTACTGGAGAAAGGCGATGGCGGACATGCCAAGACTCTACTTTGTTCGAGCAGCACTCACTTTTCTGGTCATGTTTATTCTTTTTGCGTTCTGGCTCTTCTACGTCGTTAGAATCATGTTCGAGAGATACGACAATTACAAATATATTGTGAGTT
i caeJap4.Scaffold17990 C 0 C 0

a score=1820.000000
s ce10.chrX              2887426 2 + 17718866 TT
s caeRem4.Crem_Contig15   378759 2 -  1794024 tt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    385890 2 +   484378 tt
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3542994 2 -  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   128328 2 -   357190 TT
i caeJap4.Scaffold17990 C 0 I 17
e cb4.chrX              17637190 0 - 21540570 C

a score=-81.000000
s ce10.chrX              2887428  8 + 17718866 TTTTTTCA--
s caeRem4.Crem_Contig15   378761 10 -  1794024 tcatttttca
i caeRem4.Crem_Contig15 C 0 I 49
s caeSp111.Scaffold582    385892  8 +   484378 tcattcca--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3542996  8 -  4147112 ctgtttca--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   128330 17 -   357190 I
e cb4.chrX              17637190  0 - 21540570 C

a score=857.000000
s ce10.chrX              2887436 4 + 17718866 AACA
s caeSp111.Scaffold582    385900 4 +   484378 aaca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3543004 4 -  4147112 aata
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold17990   128330 17 -   357190 I
e cb4.chrX              17637190 0 - 21540570 C
e caeRem4.Crem_Contig15   378771 49 -  1794024 I

a score=100.000000
s ce10.chrX              2887440 1 + 17718866 C
s caeSp111.Scaffold582    385904 1 +   484378 C
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3543008 26 -  4147112 I
e caeJap4.Scaffold17990   128330 17 -   357190 I
e cb4.chrX              17637190 0 - 21540570 C
e caeRem4.Crem_Contig15   378771 49 -  1794024 I

a score=0.000000
s ce10.chrX              2887441 691 + 17718866  
e caePb3.Scfld02_0       3543008  26 -  4147112 I
e caeJap4.Scaffold17990   128330  17 -   357190 I
e cb4.chrX              17637190   0 - 21540570 C
e caeSp111.Scaffold582    385905   0 +   484378 C
e caeRem4.Crem_Contig15   378771  49 -  1794024 I

a score=-242.000000
s ce10.chrX              2888132 35 + 17718866 TTCACTATGAATCATTTCGAAAAAAAATTGTGAAA
s cb4.chrX              17637190 19 - 21540570 TTCA-------TCATTT------GAAATGGTG---
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3543008 26 -  4147112 I
e caeJap4.Scaffold17990   128330 17 -   357190 I
e caeSp111.Scaffold582    385905  0 +   484378 C
e caeRem4.Crem_Contig15   378771 49 -  1794024 I

a score=1941.000000
s ce10.chrX              2888167 13 + 17718866 TCATAATTCATAA
s cb4.chrX              17637209  9 - 21540570 TCAGGATTC----
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold582    385905 13 +   484378 TCGTAATTCAACA
i caeSp111.Scaffold582  C 0 I 6
s caeJap4.Scaffold17990   128347 13 -   357190 TCATAATTCATAT
i caeJap4.Scaffold17990 I 17 C 0
e caePb3.Scfld02_0       3543008 26 -  4147112 I
e caeRem4.Crem_Contig15   378771 49 -  1794024 I

a score=433735.000000
s ce10.chrX              2888180 449 + 17718866 ---TTTCAGGTTTCCTATTCCACATCACTGCTCGACGCTCTTCTATGGACACATTATCTCTCTGTTGTGCTCCTCGAGCTTCGTCGTCTACGTGCCCAATTCATTGTAACTATTGTTCGCGATCCAGACGGTGAAATGCATACATTGAACATTGGCGCTGGCTCAATTCAAGAAGCTGCCACCGAGATTCTTCGTTTCTACACAACTCGATTCTCCTCGTTCAACATTCACCTTGACAACGCCAGACAGACGGCGGTTGCAAAGCAGTCTGGAATGCAAGGAGGCACCGCAGGCTTCAAGATGTACAATATCGAGCAATT---TGGAGGGCAGGAAACTGTTAGTGAAGTCAACACGCGGGCTTTGATGGAAGCCGCGGCGAGAAGAAGGATTGGTGGATATGCTGAAGTGATGCAGGAAGAACTTGATTTTGAAAAACGGTTAAAGAAGAGAAA
s cb4.chrX              17637224 449 - 21540570 ---TTTCAGGTTTCCTACTCCACATCTCTCTTGGATGCTCTCCTTTGGACACATTACCTCTCAGTGGTGCTTCTGGAGCTCCGTAGACTCCGTTCTCAGTTCATCGTTACAATTGTTCGTGACCCAGATGGTGAGATGCACACACTCAACATCGGAGCCGGATCGATTCAAGAAGCAGCAACAGAAATCTTGAGATTCTACACAACCAGATTCTCTTCATTCAACATTCACCTGGACAACGCACGACAGACAGCTGTGGCTAAACAATCTGGAATGCAGGGGGGAACTGCTGGATTCAAAATGTACAATATTGAGCAGTT---CGGAGGACAAGAGACCGTTAGTGAGGTTAACACTCGGGCGTTGATGGAAGCAGCGGCTCGGAGAAGGATTGGAGGGTACAATGAGGTTATGCAAGAGGAACTTGATTTTGAGAAGAGAGTCAAGAagagaaa
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig15   378820 449 -  1794024 ---TTTCAGGTTTCGTATTCCACCTCACTCTTGGATGCTCTTCTTTGGACACATTACCTCTCGGTTGTACTTTTGGAACTCCGACGTCTTCGATCTCAATTCATCGTTACAATAGTCCGTGATCCAGATGGTGAAATGCACACACTGAACATTGGAGCAGGATCCATTCAAGAAGCAGCAACAGAGATTCTTCGATTCTACACAACTAGATTCTCATCGTTCAACATTCATCTCGACAATGCTAGACAGACGGCAGTAGCCAAACAATCTGGAATGCAAGGTGGCACtgctggtttcaaaatgtataaCATCGAGCAGTT---TGGAGGACAAGAGACTGTCAGTGAAGTCAACACTCGTGCTTTGATGGAAGCAGCAGCTAGAAGACGGATTGGCGGATATAATGAAGTTATGCAAGAAGAAGTTGACTTTGAGAAGCgtgtgaaaaagagaaa
i caeRem4.Crem_Contig15 I 49 C 0
s caeSp111.Scaffold582    385924 452 +   484378 ---TTTCAGGTTTCGTACTCTACCTCACTTCTAGATGCACTTCTCTGGACACATTACCTTTCTGTTGTGCTCTTGGAGCTCCGAAGACTACGTTCTCAGTTCATTGTGACAATTGTCCGTGATCCAGACGGTGAAATGCACACTTTCAATATTGGAGCATGTTCAATTCAAGAAGCTTCCACAGAGATTCTTCGATTCTACACAACCAGATTCTCTTCGTTCAACATTCAACTCGACAACGCAAGACAGACAGCAGTAGCCAAACAGTCTGGAATGCAAGGAGGTACTGCTGGATTCAAAATGTACAATATTGAGCAATTCGGTGGGGGACAAGAAACTGTGAGCGAAGTTAACACTCGTGCGCTAATGGAAGCAGCAGCTAGACGTAGAATTGGAGGATATGCTGAAGTTATGCAAGAAGAGATTGATTTCGAGAAACGAGTCAAGAAGAGGAA
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3543034 449 -  4147112 ---TTTCAGGTTTCCTACTCTACCTCACTTTTGGATGCTCTTCTTTGGACACATTATCTCTCTGTCGTACTTCTAGAACTCCGGAGGCTTCGTTCTCAATTCATTGTCACAATCGTTCGTGATCCCGATGGTGAAATGCACACCTTCAATATTGGAGCCTGTTCAATTCAAGAAGCTGCCACAGAAATTCTTCGATTTTACACGACGCGATTCTCTTCTTTCAACATTCAACTTGACAATGCAAGACAGACAGCGGTAGCAAAGCAGTCTGGTATGCAAGGAGGTACTGCTGGCTTCAAGATGTACAATATCGAACAGTT---TGGACCACAAGAGCCTGTAAGCGAAGTGAACACTCGTGCTTTGATGGAAGCAGCTGCTAGACGAAGAATCGGAGGTTATGCTGAAGTGATGCAAGAAGagattgattttgagaaacgCGTCAAGAAAAGGAa
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold17990   128360 452 -   357190 TCCCTTCAGGTTTCCTACTCTACGTCTCTTCTCGACGCTCTTCTTTGGACCCACTACCTCTCTGTGGTGCTCCTCGAACTCCGCCGTCTAAGAGCTCAATTCATTGTCACAATTGTCCGTGATCCAGATGGTGAAATGCACACTTTGAACATTGGAGCTGGCTCTATTCAAGAAGCGGCTACTGAAATTTTGCGCTTCTACACCACTCGCTTCTCCTCCTTTAACATTCACCTGGACAATGCCCGTCAGTCTGCTGTAGCAAAACAATCTGGAATGCAAGGAGCCACCGCTGGCTTCAAAATGTACAATATTGAGCAGTT---TGGAGGACAGGAAACTGTTAGCGAAGTGAACACTCGGGCGCTCATGGAAGCTGCTGCCAGAAGGAGAATTGGAGGATACACGGAAGTCATGCAAGAGGAGCTGGACTTTGAGAAGCGGCTCAAAAAGCGAAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-15646.000000
s ce10.chrX              2888629 100 + 17718866 GTAAGTGTTTTCAAATTCAGAACTAACGAT---TTGGATAC--------TTtgaacaaattttgtaatgaaacttctcaaaaaagtttaaaactttttttaaacggctgtt
s cb4.chrX              17637673  32 - 21540570 gtgagtttttt-----tttaat------at---ttgaatatcactt-----------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379269  43 -  1794024 gtgagtttattCAATGTATAAA------ATAACATGGATACGGGTTCTT--------------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    386376  16 +   484378 GTGAGT----------------------AT---TTGTTGTT----------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3543483  32 -  4147112 gtgagttatttttgaagactaA------AT---TCGCTTCT----------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   128812   0 -   357190 C

a score=-2000.000000
s ce10.chrX              2888729 26 + 17718866 tcaacttcctaaatattatattactt
s caeRem4.Crem_Contig15   379312 12 -  1794024 ---------CAAGCATCCTAG-----
i caeRem4.Crem_Contig15 C 0 I 4
s caePb3.Scfld02_0       3543515  5 -  4147112 -----------AATAT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   128812  0 -   357190 C
e cb4.chrX              17637705  0 - 21540570 C
e caeSp111.Scaffold582    386392  0 +   484378 C

a score=0.000000
s ce10.chrX              2888755 29 + 17718866 ttttcaaagctataatttcaaattttgtc
e caePb3.Scfld02_0       3543520  0 -  4147112 C
e caeJap4.Scaffold17990   128812  0 -   357190 C
e cb4.chrX              17637705  0 - 21540570 C
e caeSp111.Scaffold582    386392  0 +   484378 C
e caeRem4.Crem_Contig15   379324  4 -  1794024 I

a score=-692.000000
s ce10.chrX              2888784 49 + 17718866 cacttttccctgtcacaactgttggaaTTATATTTTAGAGTTGAGGTAG
s caePb3.Scfld02_0       3543520  9 -  4147112 ----------------------------------------TTGAGCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   128812  0 -   357190 C
e cb4.chrX              17637705  0 - 21540570 C
e caeSp111.Scaffold582    386392  0 +   484378 C
e caeRem4.Crem_Contig15   379324  4 -  1794024 I

a score=0.000000
s ce10.chrX              2888833 1 + 17718866 C
e caePb3.Scfld02_0       3543529 0 -  4147112 C
e caeJap4.Scaffold17990   128812 0 -   357190 C
e cb4.chrX              17637705 0 - 21540570 C
e caeSp111.Scaffold582    386392 0 +   484378 C
e caeRem4.Crem_Contig15   379324 4 -  1794024 I

a score=-497.000000
s ce10.chrX              2888834 36 + 17718866 GAAAtgattttttggacacaaaatggcctaaaatta
s caeSp111.Scaffold582    386392 11 +   484378 GAAACGATCCT-------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3543529  0 -  4147112 C
e caeJap4.Scaffold17990   128812  0 -   357190 C
e cb4.chrX              17637705  0 - 21540570 C
e caeRem4.Crem_Contig15   379324  4 -  1794024 I

a score=-792.000000
s ce10.chrX              2888870 18 + 17718866 aggaaatttttattgaga
s cb4.chrX              17637705 12 - 21540570 agaaaatttttg------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    386403  3 +   484378 AGG---------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3543529  0 -  4147112 C
e caeJap4.Scaffold17990   128812  0 -   357190 C
e caeRem4.Crem_Contig15   379324  4 -  1794024 I

a score=-6222.000000
s ce10.chrX              2888888 57 + 17718866 agttctgaaa-attgttcaaaaaaa--------attatggcggttcaaagcttttaaaaatggcct
s cb4.chrX              17637717 24 - 21540570 -gcttaaaaacaCCGATCCACACAA-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379328 25 -  1794024 aattctgaaaactttatcATAATTA-----------------------------------------
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    386406 29 +   484378 ATCTCTGTGA----TATCATaacaattcgtttt---------------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3543529  0 -  4147112 C
e caeJap4.Scaffold17990   128812  0 -   357190 C

a score=-4026.000000
s ce10.chrX              2888945 28 + 17718866 CTTTTCGAAACTCATAAAATC-------------TTTACAG
s cb4.chrX              17637741 13 - 21540570 ---------------AAGATG-------------TTTCCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379353 13 -  1794024 ---------------ATATTT-------------ATTCTAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    386435  7 +   484378 ----------------------------------tctacAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3543529 23 -  4147112 ------------------CTTTACtaaacttcattttccag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   128812  0 -   357190 C

a score=286681.000000
s ce10.chrX              2888973 442 + 17718866 GTATCGCCTAATTGCCGCCGCCGAAGACGCATTCTCCCATGTTCAGAACACTGCCGAGTCC---GGAACGAACCAAAAGCCTGGAATTAACAACCAGATGGACTCACTGACCGCTGCTCAAAACGTATTCACATGGATTGTCCGGCCGCTCACCAAATATTTAAAAACTACTCGTCTTCAGTCAAGACATCCTTCAGGAGAAGTTACGAGGCACATTGAAAGGTACGTTTTTTTTAATAAACAGAATTCAAAGATTAA------GCTTTCAAATTTCAGATGCCTAACACTCAAGTTGTCTCATCGAACATTTCTCCAACGCTTCTTCAGTGACCGTATTCCCCAACGGGAAATTGTCGGGGAATCGAAATGGTCGGTAATTTGCGACGAGGCGGTGAGCTCTGGAGTTCAACACGGAACGTATCTAGTGCTCAAATCGCACAACCCAGTA
s cb4.chrX              17637754 436 - 21540570 GTACCGCTTGATGGCTGCCACAGAAGACGCATTTGCTCATGTCCAAAATAGTGCCGATGGCAACGGA------CAGAAAACAGGAATGAACAATCAAATGGACTCGCTCACCGCTGCTCAAAACGTCTTCACTTGGATCGTCCGACCACTGACAAAGTACTTGAAAACGACACGTCTCCAGTCGAGACACCCATCAGCTGAAGTCACCAGACACATTGAGAGGTAC---CTAAATTTCAAACAGAGGCCCATaattta------aagctatttttccagatgccTCACTCTGAAACTCTCTCATCGAACCTTCCTTCAACGGTTCTTCAGCGACCGCATCCCACATCGAGAAACCATCACAGAGTCGAAATGGTCGGTGATTTGTGACGAGTCAGTGAGCTCGGGTGTGCAGCATGGAACGTATCTGGTGCTCAAGTCGCATAATTCGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379366 391 -  1794024 GTACCGTCTGATGGCTGCTGCTGAAGATGCATTCTCCCATGTTCAAAACACAGCTGAATCTACCGGAGT---TCAGAAGACTGGGATCAACAACCAAATGGATTCCCTTACCGCTGCTCAGAACGTTTTCACCTGGATTGTCAGACCTCTCACAAAGTATTTGAAGACTACACGTCTTCAGTCGAGACATCCATCTGCAGAAGTCACCAGACATATCGAA---------------------------------------------------------AGATGTCTGACATTGAAGCTATCCCATCGGACGTTCCTCCAACGATTCTTCAGTGACAGATTACCTCACCGAGAGAATGTTGGGGAGTCAAAGTGGTCCGTGATTTGTGATGAATCCGTGAGCTCCGGTGTTCAACATGGAACGTACTTAGTGTTGAAATCGCATAATTCGGTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    386442 433 +   484378 GTACCGTTTGATGGCTGCAACAGAAGACGCCTTCTCTCACGTTCAAAACACAGCTGAGTCA---GGGAC---ACAGAAAGTCGGTATCAATAATCAAATGGATTCTCTTACGGCAGCTCAAAATGTGTTCACATGGATCGTCCGTCCGCTAACCAAATACCTTAAAACCACGCGCCTTCAATCCAGACATCCCTCTGGAGAGGTGACCAGGCATATCGAAAGGTATACACTATATATTACTTATTG------ATTTTA------AATGTCGTGTTTCAGATGCCTCACATTGAAACTGTCACACAGGACCTTCCTTCAACGtttttttAGTGAGAGAATccctcaaaaagaaaaaatggaggaatCAAAGTGGTCGGTGATCTGTGATGAGTCTGTTAGCTCTGGAGTTCAACATGGGACATACATCGTTCTCAAATCTCATAATgctgta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3543552 435 -  4147112 gTATCGTCTTATGGCAGCCACCGAAGACGCATTCTCTCATGTTCAAAACACTGCTGACGCT---GGAAC---TCAGAAAGTTGGGATCAACAACCAAATGGATTCTCTTACGGCTGCCCAGAACGTTTTTACCTGGATTGTCCGACCTCTGACCAAATACTTGAAAACTACACGGCTTCAATCTAGACATCCGTCTGCAGAAGTCACCAAGCATATACAGAGGTAT----TTCAGCTTGTTCAGCG------AACATATTCAATAATCTTATTTTGCAGATGTCTTACGTTAAAACTATCGCATAGGACATTCCTCCAACGGTTCTTCAGTGATAGAATTCCTCAAAAGGAAACCGTAGAGGAATCGAAGTGGTCGGTGATTTGTGACGAGTCTGTGAGCTCTGGAGTCGAACACGGAACTTATATAGTTCTCAAGTCTCATAATGCGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   128812 385 -   357190 GTACCGGTTGATTGCCGCCGCTGAAGATGCTTTTTCTCACGTGCAGAATACCGCGGAGGGT---GGG------CAAAAAACGGTAATAAACAATCAAATGGATTCTCTTACTGCTGCACAGAATGTGTTTACGTGGATCGTCAGGCCGCTTACCAAATTTTTGAAGACTACTCGGTTACAGTCGAGACATCCGTCTGGAGAAGTTACCAGGCACATTGAG---------------------------------------------------------CGATGTCTTACTTTGAAACTTTCTCATCGGACGTTTCTCCAGCGTTTCTTCAGTGATCGAATTCCTCAACAGGAAGTTGTCACTGAATCCAAATGGTCGGTGAtatgcgaggatactgtttcTTCAGGAGTTCAGAATGGCTCTTATTTTGTGCTCAAATCTCACAATTCGgta
i caeJap4.Scaffold17990 C 0 I 501

a score=-1538.000000
s ce10.chrX              2889415 7 + 17718866 AGATTTT--
s cb4.chrX              17638190 9 - 21540570 AGTGgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379757 9 -  1794024 AGTAGTTTC
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    386875 7 +   484378 agttttt--
i caeSp111.Scaffold582  C 0 I 154
s caePb3.Scfld02_0       3543987 4 -  4147112 AGTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   129197 501 -   357190 I

a score=-496.000000
s ce10.chrX              2889422 5 + 17718866 GAAAA-
s caeRem4.Crem_Contig15   379772 5 -  1794024 -GAAAA
i caeRem4.Crem_Contig15 I 6 I 181
s caePb3.Scfld02_0       3543991 5 -  4147112 CCAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   129197 501 -   357190 I
e cb4.chrX              17638199 0 - 21540570 C
e caeSp111.Scaffold582    386882 154 +   484378 I

a score=-877.000000
s ce10.chrX              2889427 8 + 17718866 GTTAATGT----
s cb4.chrX              17638199 7 - 21540570 -----tttactt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3543996 8 -  4147112 GAGAATGT----
i caePb3.Scfld02_0      C 0 I 300
e caeJap4.Scaffold17990   129197 501 -   357190 I
e caeSp111.Scaffold582    386882 154 +   484378 I
e caeRem4.Crem_Contig15   379777 181 -  1794024 I

a score=-3144.000000
s ce10.chrX              2889435 640 + 17718866  
s cb4.chrX              17638206 466 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3544004 300 -  4147112 I
e caeJap4.Scaffold17990   129197 501 -   357190 I
e caeSp111.Scaffold582    386882 154 +   484378 I
e caeRem4.Crem_Contig15   379777 181 -  1794024 I

a score=-4667.000000
s ce10.chrX              2890075 84 + 17718866 aaaatttttgaaaagattcactcaaacttcgct----cGAAAAAAAAACAGTTACTTCTCAGACTTGCTAAACC----GTTTAATATTACCT--
s cb4.chrX              17638672 85 - 21540570 -AAAGTCCAAGG------CTCATGAATGTGATTTCTTTTATAAGAAATATGCCACTTTCCAAAattggaactttcaaaaattaata--ataTAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3544304 64 -  4147112 aaaacttttggg----------tAAATGTTACT----------AGAATTTGCCG---TCCAGCACTTACTTTTT----GCTTAATC--ACTTG-
i caePb3.Scfld02_0      I 300 C 0
e caeJap4.Scaffold17990   129197 501 -   357190 I
e caeSp111.Scaffold582    386882 154 +   484378 I
e caeRem4.Crem_Contig15   379777 181 -  1794024 I

a score=-96.000000
s ce10.chrX              2890159 1 + 17718866 T
s cb4.chrX              17638757 1 - 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   379958 1 -  1794024 t
i caeRem4.Crem_Contig15 I 181 C 0
s caePb3.Scfld02_0       3544368 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   129197 501 -   357190 I
e caeSp111.Scaffold582    386882 154 +   484378 I

a score=108373.000000
s ce10.chrX              2890160 146 + 17718866 TTTTCAGGATATCGACTGCGGAGTTCAACTTGTTTGCACCATCTCGAGTATTCCGTTCTTCAATTTGACCGAGCAAGCCAAACCTGGAAATGAAAAGTTTTCCTTAAAAATTAGCAATGAGTCGGCAGTTT-GATTTGTGGGCTAGT-----
s cb4.chrX              17638758 146 - 21540570 TATTCAGGATGTCGACTATGGAGTACAACTTGTCTGCACAATCACAAGCATTCCATTCTTCAACCTAACGGAACAAGCCAAATCGGGAAGCGAGAAGTTTTCGCTGAAGATTAGCAACGAGTCGGCTGTCT-AAATCGAAATCTAAC-----
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig15   379959 146 -  1794024 ttttcaggatGTCGACTATGGAGTACAACTCGTCTGCACAGTTTCTAGTATTCCATTCTTCAATTTGACAGAGCAAGCCAAATCGGGCTCGGAtaaattttctctcaaaattagCAACGAGTCGGTCGTCT-AACCCACCCGTGAAC-----
i caeRem4.Crem_Contig15 C 0 I 26
s caeSp111.Scaffold582    387036 146 +   484378 ttttcaggatATCGACTGCGGGGTTCAGCTGGTCTGCACTGTTTCAAGCATTCCGTTCTTCAACCTGACAGAGCAAGCCAAATCAGGAAGTGAGAAATTCTCACTCAAAATAAGCAACGAATCAGCAGTCTGAACTTTGTCtcaac------
i caeSp111.Scaffold582  I 154 I 54
s caePb3.Scfld02_0       3544369 145 -  4147112 GTTTTAGGACATTGACTATGGAGTTCAACTCGTCTGCACTGTATCCAACATcccgtttttcaatttaacGGAGCAAACTAAATCTGGAGACGATAAATTCTCCCTAAAGATTAGCAACGAGTCAGCTGTCT-AATTCCTTATCAAG------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17990   129698 151 -   357190 tTTACAGGATATTGATTGTGGAGTTCAACTAGTGTGCTCCGTGTCGAGCATTCCGTTTTTCAATCTTACGGAGCAAGCGAAATCGAGCAATGAAAAGTTTGCGCTAAAGATCAGCAACGAGTCGGCGGTCT-AAACCCCTCTTAGGATCAAT
i caeJap4.Scaffold17990 I 501 C 0

a score=-18380.000000
s ce10.chrX              2890306 35 + 17718866 ----------CATCAT---------GCCATCAAGTAAACTTCCAAAA------------------------AAATGCC-----------------------
s cb4.chrX              17638920  5 - 21540570 -------------------------------------------------------------------------ATACC-----------------------
i cb4.chrX              I 16 I 17
s caeRem4.Crem_Contig15   380131 26 -  1794024 ----------tttta----------aatatcaag--------CGAAA------------------------TGATACC-----------------------
i caeRem4.Crem_Contig15 I 26 I 16
s caePb3.Scfld02_0       3544530 25 -  4147112 ----------TATCC----------AATATCAAGAA------CCAAG------------------------TTCT--------------------------
i caePb3.Scfld02_0      I 16 I 26
s caeJap4.Scaffold17990   129849 95 -   357190 TTCAGTTCACTATCATAGTCCATTCGcaatcaaaaa------caaaacatctgtcattattttttcccttCTTGTACCGCTGAAATCGGTcaaaaatcaat
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    387182 54 +   484378 I

a score=113453.000000
s ce10.chrX              2890341 495 + 17718866  
s cb4.chrX              17638942 447 - 21540570  
i cb4.chrX              I 17 I 16
s caeRem4.Crem_Contig15   380173 495 -  1794024  
i caeRem4.Crem_Contig15 I 16 I 1
s caeSp111.Scaffold582    387236 456 +   484378  
i caeSp111.Scaffold582  I 54 C 0
s caePb3.Scfld02_0       3544581 481 -  4147112  
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold17990   129944 462 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-10194.000000
s ce10.chrX              2890836 26 + 17718866 TGCGAACAAGATAGTTTTAAGTT-------------------------GGA
s caeRem4.Crem_Contig15   380669 11 -  1794024 tg-----aaaatg-----------------------------------aga
i caeRem4.Crem_Contig15 I 1 I 2
s caeSp111.Scaffold582    387692  7 +   484378 ---------ATTA-----------------------------------GGA
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3545062 42 -  4147112 ---------GGTATTTTGGAGTGAGACGAGTTGAATCCAAACTGAATTGGG
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   130406  1 -   357190 --------------------------------------------------a
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17639389 16 - 21540570 I

a score=193666.000000
s ce10.chrX              2890862 190 + 17718866 TTACACAAAAAGTCTCGGGAACATCAAGCTTCTCTTCTTCCTTCCAAATCTACTGCTGGTGATTCTCTGACTATTGAAAAACGTGGAAATTCTGTCGTTGATCGTGGGATCCATATCATATACAATACCGTTCTCATCCATGAACTGGTTGGGCGAGAAGTTGTCATTGATTTGTTTTTGCTGAAAACAG
s cb4.chrX              17639405 182 - 21540570 TCAGATGAAAAGTCTTGGGAAGATGAGACTTCTCTTCTTTCTGCCGAATCTGCTGTTTGTGATTCTCTGACTGTTGAAAAACGTGGAAATTCTGTCGTTGATGGTTGGATCCATATCGTAGACGATACCATTCTCGTCCATGAACTGGTTTGGCGAGAAGTTGTCGTTGATCtgtttttgct--------
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig15   380682 184 -  1794024 ttagacgaaaaGTTTTGGGAAGATGAgacttctcttctttcttccaaaTCTGCTGTTTGTTATTCTCTGActattgaaaaatgtggaaattctGTCGTTGATGGTTGGATCCATATCATAGACGATACCGTTCTCGTCCATAAACTGGTTTGGAGAGAAGTTGTCGTTGatttgtttttgctga------
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    387702 185 +   484378 TCAGATGTATAGTCTTGGGAACATAAgactcctcttctttctgcCAAATCTGCTGCTTGTGATTCTCTGGCTGTTGAAGAATGTGGAGATTCTGTCATTGATGGTTGGATCCATATCATAGACAATACCGTTCTCGTCCATAAACTGGTTAGGAGAGAAGTTGTCGttgatttgtttttgctgaa-----
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3545107 186 -  4147112 TCAGAAGTAGAGCTCTGGGAAGATAAGACTTCGCTTCTTTCTTCCAAATCTGCTGTTAGCAATTTTCTGGCTATTGAAGAATGTGGAGATTCTGTCATTGATGGTTGGATCCATATCATAGACGATACCGTTCTCGTCCATGAACTGGTTAGGGGAGAAGTTGTCGTTGAtttgtttttgctgaaa----
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   130407 190 -   357190 ttaaaagaagaGCTCTGGGAATATAAGACTTCTCTTCCTCCTTCCAAATCTACTATTCGTGATTTTCTGGCTGTTGAAAAACGTGGAAATTCTGTCATTAATAGTCGGGTCCATGTCGTAAACAATTCCATTTTCATCCATGAACTGGTTAGGCGTAAAGTTGTCgttaatttgtttttgctgaaaaaaa
i caeJap4.Scaffold17990 C 0 I 51

a score=-6110.000000
s ce10.chrX              2891052 34 + 17718866 TATTGGTGAAAACCGATTCAAATCTAAAA----AATTG
s cb4.chrX              17639587 26 - 21540570 ------ttaaaa------aaaatacgaaaattgaTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   380866 28 -  1794024 ----aattcaaa------aaattaacaaacTGAATTTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    387887 29 +   484378 ----aacaaaaa-----taaacatccaaaaaatgaaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3545293 30 -  4147112 ---tagttaaaa-----taaaaaaccaattatGAACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   130597 51 -   357190 I

a score=384724.000000
s ce10.chrX              2891086 593 + 17718866  
s cb4.chrX              17639613 539 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   380894 575 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    387916 579 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3545323 573 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   130648 571 -   357190  
i caeJap4.Scaffold17990 I 51 n 51

a score=-4971.000000
s ce10.chrX              2891679 25 + 17718866 ---------TTCACGAGTTTTAAATGATTTTTCG
s cb4.chrX              17640152 18 - 21540570 ---------TTT---GGTTTCGGTTTTTTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   381469 18 -  1794024 ---------TATTCAAgcctcgatttt-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    388495 31 +   484378 AAAGCATTCCTG---ATTTTCAGCTGTGCTTTTG
i caeSp111.Scaffold582  C 0 I 219
s caePb3.Scfld02_0       3545896 19 -  4147112 ---------ttc---agtttcagCTTTGTTC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   131219 51 -   357190 I

a score=-1337.000000
s ce10.chrX              2891704 50 + 17718866 AAGATCT-------------CTAGCAATATTCGCAGAACGTCATGCATGTTAAGAGTAAACAA
s cb4.chrX              17640170 57 - 21540570 CAGCTTTGTTTtgga---atacgaaaaaaaaggaagcaAATGATGTG---GAGTAGTAAACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   381487 57 -  1794024 cagctttcttttcagtttatttcagAGAATGGGAAGAAGTTGGC------CAAGAGTAAACAA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3545915 39 -  4147112 ---CTTT-----------GGCTGGAAAAATCGGGAGTGGA----------AAGGTGTAAACAA
i caePb3.Scfld02_0      C 0 I 91
e caeJap4.Scaffold17990   131219 51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I

a score=-3207.000000
s ce10.chrX              2891754 116 + 17718866 AACAAGTATGAACAAATATTTTCCGTGAATAAAAATTTTTCAA-----GAATAACATGAACGTACAAAGAATGTATTTCTTTTTCTACGATTTTTACCATTCCTGAAAAAAAAATTGCTTA-
s cb4.chrX              17640227  83 - 21540570 AATAAACCTGAATTCG-ATTGTTAttgaaataataattttc-------caaTAGTTGGAAA-------------ATgtgttatttttaa---------att---------aaatttgtCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   381544  95 -  1794024 CGAGAACCTGTATTTT--CTGTCTTTGGTCGAAGATTTGTCAGTGTCAAAATAGTGGG----------------ATTTGTTATTTTAAGAAATTGATCAGT---------GACTTTGCCTAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3545954  91 -  4147112 I
e caeJap4.Scaffold17990   131219  51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I

a score=6130.000000
s ce10.chrX              2891870 23 + 17718866 AAACTGTTAAATATAGAG----ATAAA
s cb4.chrX              17640310 23 - 21540570 GAACTTTTAAAGATTAAC----ACAAA
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig15   381639 23 -  1794024 GAACTTTTAAAGTTCGAg----acaaa
i caeRem4.Crem_Contig15 C 0 I 73
s caePb3.Scfld02_0       3546045 27 -  4147112 GAACTTCTAAAGTTCGAGAATAACAAA
i caePb3.Scfld02_0      I 91 C 0
e caeJap4.Scaffold17990   131219 51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I

a score=-3195.000000
s ce10.chrX              2891893 72 + 17718866 ------GTTGGC-------TATTGAAAAAGGCCACTACAAAATATTTTGCATTTTTT--------TTTTGAACCGGAAGAGA-TTTGTTAACTT
s cb4.chrX              17640359 76 - 21540570 ------atttgt-------ttttcaga----tcatccaaaaataaattctgtTCTATTGGGTAAATTTCCAGTAGGAAGAACATTTGC-AATTT
i cb4.chrX              I 26 I 255
s caePb3.Scfld02_0       3546072 64 -  4147112 GTTTCAATCAGTGAACAAATTATCACA---GTCAATATAAAATGAATagtgt-------------ttttcagaag--------tttgc------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   131219 51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I
e caeRem4.Crem_Contig15   381662 73 -  1794024 I

a score=91.000000
s ce10.chrX              2891965 38 + 17718866 TGAAAACTTCGGTCGTGTagtgaggcgcggaatgaagt
s caePb3.Scfld02_0       3546136 20 -  4147112 ------------------aGTAAAAAACGTATTGAGgt
i caePb3.Scfld02_0      C 0 I 175
e caeJap4.Scaffold17990   131219 51 -   357190 I
e cb4.chrX              17640435 255 - 21540570 I
e caeSp111.Scaffold582    388526 219 +   484378 I
e caeRem4.Crem_Contig15   381662 73 -  1794024 I

a score=0.000000
s ce10.chrX              2892003 214 + 17718866 cctcacgccgactccgcgcaccgctgtgtgtatacaatgaagtgcgaagggtagttatttagaagcggccgacattttccaggttccgcgccgcactttaaatttggatacatgcctcgtgagtgacgccgtgaggccggtgctgcgacctcatgggagccgTGTTTTTTTCAAGAAGCTTCAAGTAGGATTGCATACCTCTAAACTCCAAAAA
e caePb3.Scfld02_0       3546156 175 -  4147112 I
e caeJap4.Scaffold17990   131219  51 -   357190 I
e cb4.chrX              17640435 255 - 21540570 I
e caeSp111.Scaffold582    388526 219 +   484378 I
e caeRem4.Crem_Contig15   381662  73 -  1794024 I

a score=474.000000
s ce10.chrX              2892217 25 + 17718866 AAAAACAATAGTCTGAAAATGATAT
s cb4.chrX              17640690 25 - 21540570 AACGACACcctttttaaaaagaaat
i cb4.chrX              I 255 C 0
e caePb3.Scfld02_0       3546156 175 -  4147112 I
e caeJap4.Scaffold17990   131219 51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I
e caeRem4.Crem_Contig15   381662 73 -  1794024 I

a score=-13492.000000
s ce10.chrX              2892242 177 + 17718866 -TTAAAGCAATTTTATGATCCTGAAAATTCAGGGCGGTTTTTTTCTGATTGAAAGTGCAAAGCTGCCGTTGCGTACTGGCCTAA-------TTTA-------------------AGGGTTCTCTCTTAAATGGAAAA------------TTTT--GTC------ATTCAGAACTCTAATTGTGAACCTTTTTAAGGCAGATAACTAGAGATAGCT----AGACTGACA------------------
s cb4.chrX              17640715 226 - 21540570 -ttaaa-------tACAATATTGTCAATCTAGAGTTGTTTA-Tacgctctgaaattttcaaggtg--aTTGAAAATT--CGTAAGCCGAGCTTCTAAAAACGTTCAAAACGGCAGGAAATCTATTTTATATTCAGGAGGCAAGCTTATCTTCTAAGCCAAAACTTTCCAAAGCTTAAGTTTTGATCCATTCT-------CTTACcaaagaacattttcagaaatgacaCCATTAccttgaaaaacg
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3546331 128 -  4147112 TTCAAG-------CACA-------------TGAGCCTTTCAGTTCCCACTGCAGTTCTCA-------------------------------TTCT-------------------GAGAAACTACCTTAT--------------------TCCT--GCC----CGCTTTGAAGC-TAATTTTATAACAATTC---------------AAAACCGTCTTCAATACACACAC----GTCACAAAAAa--
i caePb3.Scfld02_0      I 175 C 0
e caeJap4.Scaffold17990   131219  51 -   357190 I
e caeSp111.Scaffold582    388526 219 +   484378 I
e caeRem4.Crem_Contig15   381662  73 -  1794024 I

a score=138.000000
s ce10.chrX              2892419 2 + 17718866 GA
s cb4.chrX              17640941 2 - 21540570 aa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    388745 2 +   484378 ga
i caeSp111.Scaffold582  I 219 C 0
s caePb3.Scfld02_0       3546459 2 -  4147112 gc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   131219 51 -   357190 I
e caeRem4.Crem_Contig15   381662 73 -  1794024 I

a score=14479.000000
s ce10.chrX              2892421 109 + 17718866 ATCTTCAAATATCCTT-------------------------------TTTAGGAAATGTCGTTTATTGCAT-----G-------------AGAAAATCTGAAAGTGTAGGAAGCATAGAAACCAGTTGTATGATTGGCGGGAGTCTT---------------------------ACTGTACAATG
s cb4.chrX              17640943 132 - 21540570 aacttgaa---------------------------------------attagaaaaa---atttattgcaa-----aaaatacctatttgaaaaaatctgaaagtgtaA------TAAAGAccagttgaaaatttggtgAGATTTTGTAATTTGTGGAGTACAAAACGAAATACATATGTCAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   381735 110 -  1794024 attttcaaaatctatcaGT----------------------------ATTAAAAGAAGT-Atttattgcag-----a-------------aaaaaatctgaaagtggaATTGCC-TAGATACCAGTTAATAGTTTGGTCAGATATTA---------------------------ATATATCGGtt
i caeRem4.Crem_Contig15 I 73 C 0
s caeSp111.Scaffold582    388747 101 +   484378 attttca----------------------------------------atgagaaaaaataatttattggaattg--a-------------gaaaaatctgaaagtgTAAGAGG--TAAGGACCAGTTATAGATTTGGGGATAGTGTA---------------------------ACCTAATGAAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3546461 144 -  4147112 attctcaatttttatttttccagatacaaTAAAAAACCACCGCtatcataaaaataaatagtttattgcaaatatca-------------aaaaaatctgaaagtgtaAAATGC-TAGAGACCAGTTATTCATTTGGCGAGAGTGTA---------------------------Atctatcaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   131219  51 -   357190 I

a score=293904.000000
s ce10.chrX              2892530 485 + 17718866  
s cb4.chrX              17641075 462 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   381845 453 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    388848 454 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3546605 483 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   239380 455 +   357190  
i caeJap4.Scaffold17990 I 13737 I 38

a score=-684.000000
s ce10.chrX              2893015 2 + 17718866 GT-------
s caeRem4.Crem_Contig15   382298 9 -  1794024 GTCCTTACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    389302 2 +   484378 GT-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3547088 2 -  4147112 GT-------
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold17990   239835 38 +   357190 I
e cb4.chrX              17641537 0 - 21540570 C

a score=789.000000
s ce10.chrX              2893017 32 + 17718866 ATC-----------TCTGCAAGACACTTAGCTGATCGAGTTGA
s cb4.chrX              17641537 18 - 21540570 --------------TATGCAATA----AGGCT-------CTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   382307 25 -  1794024 ----------ATCATATTCAAGACAC-AAACT-------TTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    389304 35 +   484378 ATCATTCAAGATGATATGCAAGACAC-AAACT-------TTGA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3547090 15 -  4147112 I
e caeJap4.Scaffold17990   239835 38 +   357190 I

a score=410716.000000
s ce10.chrX              2893049 523 + 17718866  
s cb4.chrX              17641555 519 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   382332 541 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    389339 538 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3547105 533 -  4147112  
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   239873 496 +   357190  
i caeJap4.Scaffold17990 I 38 I 229

a score=7665.000000
s ce10.chrX              2893572 9 + 17718866 TTGTCATCA
s cb4.chrX              17642074 9 - 21540570 ttgtcatCA
i cb4.chrX              C 0 I 902
s caeRem4.Crem_Contig15   382873 9 -  1794024 ttgtcaTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    389877 9 +   484378 ttatcATCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3547638 9 -  4147112 ttatcaTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   240369 229 +   357190 I

a score=613.000000
s ce10.chrX              2893581 2 + 17718866 CT
s caeRem4.Crem_Contig15   382882 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    389886 2 +   484378 CT
i caeSp111.Scaffold582  C 0 I 372
s caePb3.Scfld02_0       3547647 2 -  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   240369 229 +   357190 I
e cb4.chrX              17642083 902 - 21540570 I

a score=-151.000000
s ce10.chrX              2893583 34 + 17718866 AGGATGAT-TCAGATGTGATAAGATTTATATTAAT-------------------
s caeRem4.Crem_Contig15   382884 34 -  1794024 -GAATCATGTCTTATCGGGTATGATTCATTCcaat-------------------
i caeRem4.Crem_Contig15 C 0 I 452
s caePb3.Scfld02_0       3547649 52 -  4147112 -GAATCATTTCTCGTTCGG-ATGATTCACTCCAACAGAGATTTATGTTGTTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   240369 229 +   357190 I
e cb4.chrX              17642083 902 - 21540570 I
e caeSp111.Scaffold582    389888 372 +   484378 I

a score=537.000000
s ce10.chrX              2893617 124 + 17718866 TTATGTTTTCC---------GCATTTCA--AATGTAGACTGAAA--ACACCTATGATTTT-TTTTGTTTCAAATGAAAGGTATTTGGTAATTGATCAAAATGTTATTAGGTCAAGTTGAATTGAAGTTTGATTTTCCA
s caePb3.Scfld02_0       3547701 134 -  4147112 TTGTGCTGGCTTAAGTGATATCATTTCAGCAACCTAGATCAAAATGGATTCAGTGACcttattgtttttgaactgaGTTGTGTTTGTTATAACATCATATGGTAA--AGGTTACTCTAAATTAGGGTt--atcttcca
i caePb3.Scfld02_0      C 0 I 434
e caeJap4.Scaffold17990   240369 229 +   357190 I
e cb4.chrX              17642083 902 - 21540570 I
e caeSp111.Scaffold582    389888 372 +   484378 I
e caeRem4.Crem_Contig15   382918 452 -  1794024 I

a score=0.000000
s ce10.chrX              2893741 1803 + 17718866  
e caePb3.Scfld02_0       3547835  434 -  4147112 I
e caeJap4.Scaffold17990   240369  229 +   357190 I
e cb4.chrX              17642083  902 - 21540570 I
e caeSp111.Scaffold582    389888  372 +   484378 I
e caeRem4.Crem_Contig15   382918  452 -  1794024 I

a score=686.000000
s ce10.chrX              2895544 21 + 17718866 GATTTTTGAAATGTTTAATTT
s cb4.chrX              17642985 21 - 21540570 GATCTTTATGATGTTCTGTTG
i cb4.chrX              I 902 C 0
e caePb3.Scfld02_0       3547835 434 -  4147112 I
e caeJap4.Scaffold17990   240369 229 +   357190 I
e caeSp111.Scaffold582    389888 372 +   484378 I
e caeRem4.Crem_Contig15   382918 452 -  1794024 I

a score=-543.000000
s ce10.chrX              2895565  8 + 17718866 ----TCTCACCC
s cb4.chrX              17643006 12 - 21540570 CCTTCATCAATA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3548269  8 -  4147112 ----tttCGCGT
i caePb3.Scfld02_0      I 434 C 0
e caeJap4.Scaffold17990   240369 229 +   357190 I
e caeSp111.Scaffold582    389888 372 +   484378 I
e caeRem4.Crem_Contig15   382918 452 -  1794024 I

a score=584.000000
s ce10.chrX              2895573 4 + 17718866 ATTT
s cb4.chrX              17643018 4 - 21540570 GTTC
i cb4.chrX              C 0 I 4
s caePb3.Scfld02_0       3548277 4 -  4147112 GTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   240598 4 +   357190 ATAT
i caeJap4.Scaffold17990 I 229 C 0
e caeSp111.Scaffold582    389888 372 +   484378 I
e caeRem4.Crem_Contig15   382918 452 -  1794024 I

a score=-1294.000000
s ce10.chrX              2895577 1 + 17718866 -T
s cb4.chrX              17643026 1 - 21540570 -T
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15   383370 1 -  1794024 -t
i caeRem4.Crem_Contig15 I 452 C 0
s caePb3.Scfld02_0       3548281 1 -  4147112 -T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   240602 1 +   357190 G-
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    389888 372 +   484378 I

a score=201347.000000
s ce10.chrX              2895578 502 + 17718866  
s cb4.chrX              17643027 552 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   383371 503 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    390260 490 +   484378  
i caeSp111.Scaffold582  I 372 C 0
s caePb3.Scfld02_0       3548282 520 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   240603 528 +   357190  
i caeJap4.Scaffold17990 C 0 I 1524

a score=115117.000000
s ce10.chrX              2896080 300 + 17718866 ATCACGGGACCTGTAA---A----------TCTTT--ATTATTACTGAAGTTTGGATGAATT-T-TGATGTATTACATCGTATTTTT----------AACA----GATCA--AGATACTTATTTGAAAGATCACTGATACCAAAAC-AGTGATCTCTGT-----CATTTATGAAC--AAAAGTCTCGGCGTGCTTCCTTGATGAGGACGTGCAATATCATTTTCATTCAAC------TGTTTAACGTTCAGAGGTTGACGTTT-------AGGC----TATAGATACGAGGACTTGTCGAAA----ATAATAATTGGCATGTGACCGGAAAAGATGATAGATCAGAAGTTTATATTTTTGCA
s cb4.chrX              17643579 326 - 21540570 GTCATCGGACCTGCAATCGTATTTGTATTATTTTT----------------AATGATGAATTGTGTGTTATTGAAAACTATAGTTTTTGATCGAGGAAGAGTTGTGACTA--AAAGGCGAATTCGAAAGATCACTCCTATCAATCTGGGTGATCTCTGT-----TATAACTGAACCGACACATTTG-GCGTGCTACCTTGATCGAAACGTGCAATATCATTTTCATTCTGT--------GTTAACGTTCACAGATGGTTTTAGGGGTTACAAAC----TAGAGATACGGGGACTTTCcgaaaatatatattttttgtcatGTGACCGGAAAAGATGATAGATCAGAAGTCTAAATATTTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   383874 330 -  1794024 TTCATCGgacctaaaa---aatttttttaattttt---gattgtcCAATAAAATGATGAATTGT-TGTTATTGTCTACTACACTCACTTTCGTAGGAAGCGTTGTGACTATCAAATTATAATTCTAAAGATCACTCATATCAAAATCTGTGATCTCTGT-----CATTACCAAAC--ATACGATAT-GCGTGCTTCCTCAATTGGGACGTGCAAGATCGTTTCCATTCTGT-TGATATATTTAACGTTCACAGATTGATGTG--------ACAC----TAGAGATACAAGAACttcccaaaa----ataatttttctcatgTGACCGGAAAAGTTGATAGATCAGAAGTTTAAATATTTGCA
i caeRem4.Crem_Contig15 C 0 I 643
s caeSp111.Scaffold582    390750 330 +   484378 GTCGTCGGACCTGAAA---TAATTGTT---ATTTT--AGATTGAATAATCATTTGATAAATTGA-TGTTATTGTCTACcactcctttttttgatcGAAGCATTGTGACTA-GAggaagaaattcgaaagatCACTCATATCAAAATTAGTGATCTCTGT-----CATGAACTTCG----AAGTTTC-GCGTGCTTCCGAAATGGGGACGTGCAATATCGTTTCCATTCAACAACACCAGTTTAACGTTCAGAGGTTGATTTT--------ACACTACATAGAGATACGGGGACATTCCGAAA----ATAATATCTGTCATGTGACCGGAAAAGATGATAGATCAGAAGTTTAATTGTTTGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3548802 333 -  4147112 ATCGTCGGACCtaaaa---acatagtt---tttttacaaaatttattATGACTTGATGAATTAT-TGTTATTGTATACTA--TCTTTTTCGATTCGAAGCATTGTGACTATGAGAAACAAATTCGAAAGATCACTCATATCAAAATGGGTGATCTCTGTCTTTACATGAACAACA---CACATTTC-GCGTGCTTCCTTAACAGGGACGTGCAATATCGTTTCCATTCAAC-CCACTGGTTTACCGTTCAGAGGTTGACGTTA-------ACAC----TAGAGATACGAGGACAttccgaaa----ataatttttgtcatGTGACCGGAAAAGATGATAGATCAGAAGTCTAAATATTTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I

a score=-1137.000000
s ce10.chrX              2896380 4 + 17718866 AAAA-
s cb4.chrX              17643905 5 - 21540570 GGCGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    391080 4 +   484378 AGAA-
i caeSp111.Scaffold582  C 0 I 425
s caePb3.Scfld02_0       3549135 4 -  4147112 AGTA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=-1509.000000
s ce10.chrX              2896384 58 + 17718866 ------------TTCTGACATATCGTTGGGTACAATTTTT-------ATAATAAAGTGATAGCTTTATTGGGATAAG
s cb4.chrX              17643910 74 - 21540570 TGATGATGGATCATAAGCAAAACTGTCGGGTACAAGTTTTGGGGGtgatgaaaaaaggaaagc---gTAGGGACAAG
i cb4.chrX              C 0 I 2580
s caePb3.Scfld02_0       3549139 41 -  4147112 -----ATGGAT-ACGAAATAAACCGTC-GGTACaactttt--------ttacaaaa---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e caeSp111.Scaffold582    391084 425 +   484378 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=1419.000000
s ce10.chrX              2896442 229 + 17718866 CGGTGGGcggcaattgtcgcttggcaatccggcaatggttgtcaaaaatgtcaaattgccgaaaaccttgaaattcggcaattgccaaataaaccaaattgcagaaattttgaaatttggcaattgccaaaaatgtc---gaattgccgaaaaatttgaaattcaccaattgccaaaaaaccgaattgtccaaaaattgaaaatttagcaattgccaaaaaacggacttgcc
s caePb3.Scfld02_0       3549180 208 -  4147112 --ctggGTGGCAAAGTTCATTTG--AATCAG--AATGATATcaacaaaactgaaactgaGAGGGAAACTATGGTTGAgaggttttca--------aaaacgagGGAACGTTTGGATTTTGTGATTTCCCAGAAAATCCATggactttaaaaaattttgaaa------attcatgtaAAAATCATATGCCTCAAAATCAGGAGGTTTAGCAATT----AGATACTGAGTTGTC
i caePb3.Scfld02_0      C 0 I 201
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeSp111.Scaffold582    391084 425 +   484378 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=0.000000
s ce10.chrX              2896671 434 + 17718866 aaaaaattgaaaatttagcaattgtcgacttgccaaaaaattgtaaatttggcagttgccgaaaactttgaaatttggcaattaccgaatggttgatttaccgaaaaaaaaaatccaattatcaaaatTTTCTGATTATATTGTATTGAAAGAGGAAAAAGTTAAGTTTGTTTACAAAAAACATTTATTACATTAAAAATTAGTTTTTTGCTAATTTTTTGCGTTTATTGGCCCaaaatcttttgaactcgacaattgccgaaaataccgaaaattttgaaaattttatgtttagtcaatgattgtcggttttcagaagttctggctatcgacaattgcggcaattgacaaagttgtgtaaactgccgCGCACACCTAGATCAATCCATCGAAAATTAATTTTTCAATGAAAAGCATCCAATTGAGTACTTAAA
e caePb3.Scfld02_0       3549388 201 -  4147112 I
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeSp111.Scaffold582    391084 425 +   484378 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=363.000000
s ce10.chrX              2897105 29 + 17718866 TTGTACTTACAATGTTAAATTCAAACTTA
s caeSp111.Scaffold582    391509 26 +   484378 ttgttttttccatattAAG---AACATTG
i caeSp111.Scaffold582  I 425 C 0
e caePb3.Scfld02_0       3549388 201 -  4147112 I
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=517.000000
s ce10.chrX              2897134 37 + 17718866 TTTTTTTTTG------TAGTTTTTTCAAGGATAATTTTCTAGT
s caeSp111.Scaffold582    391535 37 +   484378 CTTTTCGGTA------TTCATTACcctaaaactattttttctc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549589 40 -  4147112 -TTTTTGCTAGCGGATTTTCGTactcaaaaactattttctc--
i caePb3.Scfld02_0      I 201 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384204 643 -  1794024 I

a score=21257.000000
s ce10.chrX              2897171 107 + 17718866 GAGATGGGTGAGGTCAGTTGGCGTCCAATGTCCGATGTGAAAAG--AAAGAGCAGATGGCAGATACATGCAACACTGCCTGCCTCATCAATTTTTCAACAAG------A-----CATTGA
s caeRem4.Crem_Contig15   384847  99 -  1794024 gaggTACGCGAGGTCAGTTGGCGTCCGTTGTCCAACAAGAAAAGAGATAGAGCAGGTGGCGA---CAT------CCCGTTGcctcatcaatttttcaaaaga------aattaa------
i caeRem4.Crem_Contig15 I 643 I 144
s caeSp111.Scaffold582    391572 101 +   484378 aaggtACATGAGGTCAGTTGGCGTCTGATGTCCAACAGAAAGAA--ACCGAGCAGGTGGCTATCGCAT------CCTCTAgtctcatcaatttttcaaacagcAGAGAG-----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549629  95 -  4147112 --gGGTTTTGAGGTCAGTTGGCGTCCAATGTCCAACAGAAAGAAAGATAGAGCAGGTGGCAATGACAT------CCGTTTGCCTcatcaatatttcaaattg------a-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I

a score=2396.000000
s ce10.chrX              2897278 12 + 17718866 AAATTGAATAGT
s caeSp111.Scaffold582    391673 12 +   484378 AAATTAAAGAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549724 12 -  4147112 aaattaaagaat
i caePb3.Scfld02_0      C 0 I 153
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384946 144 -  1794024 I

a score=91.000000
s ce10.chrX              2897290 1 + 17718866 A
s caeSp111.Scaffold582    391685 1 +   484378 A
i caeSp111.Scaffold582  C 0 I 249
e caePb3.Scfld02_0       3549736 153 -  4147112 I
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384946 144 -  1794024 I

a score=0.000000
s ce10.chrX              2897291 588 + 17718866  
e caePb3.Scfld02_0       3549736 153 -  4147112 I
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeSp111.Scaffold582    391686 249 +   484378 I
e caeRem4.Crem_Contig15   384946 144 -  1794024 I

a score=160.000000
s ce10.chrX              2897879 3 + 17718866 GTT
s caeSp111.Scaffold582    391935 3 +   484378 GCT
i caeSp111.Scaffold582  I 249 C 0
e caePb3.Scfld02_0       3549736 153 -  4147112 I
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384946 144 -  1794024 I

a score=18.000000
s ce10.chrX              2897882 18 + 17718866 ACTCAA-----AAACTTGCGTGT
s caeSp111.Scaffold582    391938 23 +   484378 ATTCAATGTTTAAGCtgacctct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549889 20 -  4147112 ACCCAAAA---AGtcaaacctct
i caePb3.Scfld02_0      I 153 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I
e caeRem4.Crem_Contig15   384946 144 -  1794024 I

a score=1248.000000
s ce10.chrX              2897900 11 + 17718866 TTTTGTCATGT
s caeRem4.Crem_Contig15   385090 11 -  1794024 ttttgccgata
i caeRem4.Crem_Contig15 I 144 C 0
s caeSp111.Scaffold582    391961 11 +   484378 ttttctccgga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549909 11 -  4147112 ttttttctggc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   241131 1524 +   357190 I
e cb4.chrX              17643984 2580 - 21540570 I

a score=944.000000
s ce10.chrX              2897911 12 + 17718866 TCTTCTGGCATA
s caeRem4.Crem_Contig15   385101 12 -  1794024 ttttctggaaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    391972 12 +   484378 TCGTCAATCACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3549920 12 -  4147112 tcaTCTGCCAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   242655 11 +   357190 TCTTCTGCCGC-
i caeJap4.Scaffold17990 I 1524 C 0
e cb4.chrX              17643984 2580 - 21540570 I

a score=162531.000000
s ce10.chrX              2897923 187 + 17718866 TCACTTC---CCATCTGCGGACATGTTGCGAAACATTTTCCACAGAGCTTTGAGTCATCGGGGTGGGGATAACAATTCCTTGTTTTTCCATTGTCACAACTG---CAGTCGAC---TTGTTGCGAAACATTTAACCAGTATGGATTCCCGTATGTTTGTATCTTCACAAAATCCACAACTTCTTCATAGAATACCT
s cb4.chrX              17646564 184 - 21540570 tctttttccatcaATTCTGGACATGTTACGAAACATTTGCCGCACAATTGTGAGTCATCCGGATGTGGATAACAATTCCTTGTTTTCCCGCCATCACAACTG---CATTC---------TTGCGAAACATTCAACCAGAAAGGATTGCCATATGCTTGAAATTGTACAAATTCTGCGACTTCTTCGTAGAAAACCT
i cb4.chrX              I 2580 C 0
s caeRem4.Crem_Contig15   385113 187 -  1794024 tctgttT---TCACTTCTGGGCATGTTGCGAAACATTTTCCACATAGTCCTGAGTCATCGGGATGTGGATAacaattccttgtttttcctCCATCACAAATG---CATTCTTC---CAATTGCGAAACATTCAACCAGTACGGGTTCCCATAGGCTTGAAACTTCACAAACTCCAAAACTTCTTCGTAGTAAACct
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    391984 187 +   484378 TGTGTTT---CCTTTTCTGGACATGTTGCGAAACATTTTCCACACAATTGTGAGTCATCTGGATGTGGATAACaattccttgtttttccCCCATCACAACTG---CATTCTCC---AAGTTGCGAAACATTCAACCAGTACGGGTTTCCATAAGTTTGCAACTGCACAAATTCTACCACTTCTTCGTAGAAAACCT
i caeSp111.Scaffold582  C 0 I 42
s caePb3.Scfld02_0       3549932 190 -  4147112 TCTGTTT---CCACATCTGGACATGTTGCGAAACATTTTCCACAGAATTGTGAATCATCCGGTTTGGGATAACAATTCCTCGTTTTCCCCTCATCACAACTG---CATTCTTCTGGTAGTTGCGAAATATTCAACCAGTATGGGTTTCCATAAGTTTGCAACTGCACGAATTCTACGACTTCCTCGTAGAAAacct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   242666 193 +   357190 TCCTTTT---CCGGCTCCACGCATGTTGCGAaacattttccacaaaattgtGACTCATCCGGGTGTGGATAACAATTCGTTGTCTCTCCGCCGTCACAACTGTTACATTCTGCCAAAAGTTGCGAAACATTCAACCAGTTTGGATACCCATAAATTTTGAGTTGTGCATACTCGAAAACTTCTTCATAGAACACCT
i caeJap4.Scaffold17990 C 0 C 0

a score=-13415.000000
s ce10.chrX              2898110 35 + 17718866 TTAGTACAAATTTATTT------AAATGTTTTA----------------TTAGAGCT------
s cb4.chrX              17646748 23 - 21540570 ------Gcgat------------gatttttaaa----------------ttttattt------
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig15   385300 39 -  1794024 ------aaaatttgttttc----gaGTTTCAAACTCG--------GAGTTTGTATTT------
i caeRem4.Crem_Contig15 C 0 I 37
s caePb3.Scfld02_0       3550122 40 -  4147112 ----gaaacattttttttttgaaaactttgaga-------------aatcCAGAATT------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17990   242859 51 +   357190 -----GAAAATGTGAT-------AAACGTCTGGCctgcaaaaaatgattttttgttttaaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    392171 42 +   484378 I

a score=51272.000000
s ce10.chrX              2898145 64 + 17718866 CTTACCGTTATGCAGGTGATAAAAAATCCAATACAGACTACTTTAATAAATAATGATTCCATAA
s cb4.chrX              17646790 64 - 21540570 CTTACTGTTATACAAGTGATGAAAAACCCGATGCaaacgattttgaaaaataaggattCCATAT
i cb4.chrX              I 19 I 2
s caeRem4.Crem_Contig15   385376 64 -  1794024 CTCACTGTTAAGCATGTAATGAGACAACCAATGCAAACTATTTTGATAAATAGGGACTCCATAG
i caeRem4.Crem_Contig15 I 37 I 13
s caeSp111.Scaffold582    392213 64 +   484378 CTCACCGTTAAACAAGTGACGAGAAATCCAATACACACCACTTTGACGAATAGTGACTCCATGA
i caeSp111.Scaffold582  I 42 I 89
s caePb3.Scfld02_0       3550172 62 -  4147112 --CACTGTTACACAAGtgatgaaaaaaccaatacaCACCACTTTGATGAAGAGCGACTCCATGA
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17990   242910 62 +   357190 ctcactgtTACACAAGTGATAAAGAAGCCAACACACACAATTTTGATGAAGAGCAACTTCAT--
i caeJap4.Scaffold17990 C 0 C 0

a score=300.000000
s ce10.chrX              2898209 1 + 17718866 G
s caePb3.Scfld02_0       3550234 1 -  4147112 G
i caePb3.Scfld02_0      C 0 I 99
s caeJap4.Scaffold17990   242972 1 +   357190 G
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17646854 2 - 21540570 I
e caeSp111.Scaffold582    392277 89 +   484378 I
e caeRem4.Crem_Contig15   385440 13 -  1794024 I

a score=-5081.000000
s ce10.chrX              2898210 44 + 17718866 AAATT----ATCAGTGTT---TAATAAATGGCAAGTAGAGCAGCTCGAATG
s cb4.chrX              17646856 44 - 21540570 GACTT----CTATTGACT---TTAAGTGTTGTGAGGAGAGTagtgaaaaag
i cb4.chrX              I 2 I 3
s caeRem4.Crem_Contig15   385453 47 -  1794024 AACTT----CTGCTCGTTTACTCGGCCAGCGTGAAATAAGAAGTGAAGAAG
i caeRem4.Crem_Contig15 I 13 I 6
s caeJap4.Scaffold17990   242973 43 +   357190 GACTCGATAGCGGAGGTC---TTGCAGAGAATGACCAGCACAGAGA-----
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3550235 99 -  4147112 I
e caeSp111.Scaffold582    392277 89 +   484378 I

a score=2674.000000
s ce10.chrX              2898254 14 + 17718866 ----TAGAAGATGTGTTC
s cb4.chrX              17646903 14 - 21540570 ----aagaggatCTGTTC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig15   385506 14 -  1794024 ----CGGAGGATCCGTTC
i caeRem4.Crem_Contig15 I 6 C 0
s caeSp111.Scaffold582    392366 13 +   484378 ----CAGAGGATCCGTT-
i caeSp111.Scaffold582  I 89 C 0
s caeJap4.Scaffold17990   243016 14 +   357190 AAAAGGGAGGACCC----
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3550235 99 -  4147112 I

a score=44812.000000
s ce10.chrX              2898268 129 + 17718866 CCC-CCAAAAATCAATGCG---CAA-CGACAACGATGAGCTTATTCTCAG--GAGAAGAAAATAGAAGAGAGAGTG---GAGGCGCAGTAAGTG-------TGTGTATGTTCACTCGGGGCCATTGGAATGAGAAAAGAGAGGATC
s cb4.chrX              17646917 128 - 21540570 -TTGGCAAAAATCAATGCG---CAGCCGACGACGATGAGCTTATTCTCTG--GAGAAGCGCACAGTGAGAGTGTGA----AGACGCAGACGGCG-------CGTTCGTTTGCTCGAGGGGCCattggaaggagaa-gaagaagatc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   385520 129 -  1794024 -GT-GCAAAAATCAATGCG---CAA-CGACTACGATGAGCATATTCTCCG--GAGAAAGAAAGGAGGAGGAAACGatgggagacgcagagagcg-------TGTTCCTTCACTCTTGGGGCCAttcaaataagaa--aagaagatc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    392379 128 +   484378 CTT-GCAAAAATCAATGcgcgacga-cgacgacgatgaGCTTATTCTCCG--GAGcag-aaaggaagaagagcCGA---GAGGCGCAGACAATG-------TGTTCCGAAG-AGAGGGGGCCattcaaatgagaa--gagaagatc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3550334 117 -  4147112 CTT-GCAAAAATCAATGCG---CAA-CGACGAAGATGAGCTTATTTCCCGCAGGGCAG-AAGTGACGAAGAgctga---gagacgcagaaagtg-------TGTTC------ACAGGGGGCCATTTAAAT-------GAGAAGATC
i caePb3.Scfld02_0      I 99 C 0
s caeJap4.Scaffold17990   243030  97 +   357190 CTt-gcaaaaatcaatgaa---aaa-------------gcTTATTCCTTC--GCGTTTTGaacg---------------gagacgcagagagcaGCACATTCGTTC-----------GGCTCATTTGAATGTG----GTGAGGATC
i caeJap4.Scaffold17990 C 0 I 1788

a score=5524.000000
s ce10.chrX              2898397 21 + 17718866 TTAGTGCTGCCTCCACTCGTT
s cb4.chrX              17647045 21 - 21540570 ttGATGCACCCGTCACTTGTT
i cb4.chrX              C 0 I 859
s caeRem4.Crem_Contig15   385649 18 -  1794024 TTGTT---CCCGTCCCTCGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    392507 18 +   484378 TTGAG---GCTGTCACTCGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3550451 18 -  4147112 TTGAG---GCTGTCATCCGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I

a score=1575.000000
s ce10.chrX              2898418 5 + 17718866 TTGCG
s caeRem4.Crem_Contig15   385667 5 -  1794024 ATCCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    392525 5 +   484378 ATCCG
i caeSp111.Scaffold582  C 0 I 525
s caePb3.Scfld02_0       3550469 5 -  4147112 ATCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17647066 859 - 21540570 I

a score=-5085.000000
s ce10.chrX              2898423 186 + 17718866 ----------CTTGATGCCTTTTGCTACTTT----------GCTTGGAAGTTCATCATT----AGGCGCT-----------------------CGATTTATTTATTTTTTCTACTCACCACATTCACGAAGGAGAAGCTTT---TCTGGGATTTTCTACTAAAAATTCTCTGAAAATTTTAAAATAGAAACTTTAAAGGAGGATTCTTGAATTGTGCTCCAATGAATAAATTTCGC
s caeRem4.Crem_Contig15   385672 193 -  1794024 GTTATTTCGCATGAATTTCTTCTGTCGTTTGAGTGCATTGGACTC-CTCATTCATCATTCTGGAGGTGCAGTTTTAACTTTTCGTTAGAGTCCCGATAGTCTTGTTGTATTTGCTGAAGTCATTG----------AGGTTC---TCtgcatgttttt---------------aaaaatttatgttggaaattttttgcgagggtttt--------------atttataaatttcaC
i caeRem4.Crem_Contig15 C 0 I 235
s caePb3.Scfld02_0       3550474 134 -  4147112 GTCACTTCTCATGAATTTCTTTTGTCGTTTCAAACAATTGGACTCGGTCATTCATTAATC-AAAGGTACG-----------------------TGATCGACTTCCAGTATCT----------TTC----------AGCTTTCAATCTAGTCACTTT-----------------ATAATTGatgataaaatgtttt-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17647066 859 - 21540570 I
e caeSp111.Scaffold582    392530 525 +   484378 I

a score=-6534.000000
s ce10.chrX              2898609 842 + 17718866  
s caePb3.Scfld02_0       3550608 603 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17647066 859 - 21540570 I
e caeSp111.Scaffold582    392530 525 +   484378 I
e caeRem4.Crem_Contig15   385865 235 -  1794024 I

a score=29.000000
s ce10.chrX              2899451 1 + 17718866 T
s caeRem4.Crem_Contig15   386100 1 -  1794024 t
i caeRem4.Crem_Contig15 I 235 C 0
s caePb3.Scfld02_0       3551211 1 -  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17647066 859 - 21540570 I
e caeSp111.Scaffold582    392530 525 +   484378 I

a score=2649.000000
s ce10.chrX              2899452 14 + 17718866 TCTTCAAAGTCTTG
s caeRem4.Crem_Contig15   386101 14 -  1794024 tttccatggtctct
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    393055 14 +   484378 TCTTCGACATCTTG
i caeSp111.Scaffold582  I 525 C 0
s caePb3.Scfld02_0       3551212 14 -  4147112 TTTTTAATGTCTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17647066 859 - 21540570 I

a score=133026.000000
s ce10.chrX              2899466 344 + 17718866 -TTCCCCCGTTTTC---CTCTTCTTTT---CTTCTCTTTGAGCAATTTATCACTCTTTTTAGTGCTCTCTGGGTGGTCAGTCCCTGCC-ACTGCTGCCCAGTTTGTTGGCAC---------------------ATGCGCCGGCGTAACAAACTTTCCCATTTTTGACGCTTTTGTT--TTCCTTTTCATTTTT--TCTTTCC-----------TTTT----TTTTGTAGAAACATGATTTGATTTT----TTTT--CTGTCGG-TTTTTTTTTGGCTTTTCACTGAATCATTGGGAAATATAC------AACATGAAACATCATAACGATTTTCTATTCTCCGATTCGGGAC----AAA-GAATGTTTTTCTAATGATTCA-TACAGATCGAAAATCGAAGTTGGCAAAAA
s cb4.chrX              17647925 374 - 21540570 TTCCCTTCACCccc----attcacttt---tttttctctgagcAATTTATCACTCTTTTTAGTG--CCACCCGTGGTCAGTCCCTTCCCAgttttttccgctttttt---ccAAGTTCGGTTCTTCCCCATTTGGTCGCCGTTAAAGAAAAACTTTCCTAt------gcttttgttttttcattcccctttttgggcatttttttctcttcgctttt----cttttgagaatcatgatttgatttctatatttt--ctattggttcttttttcggctcttttctGAATCATTGCGAAACATAC------AACATGAAACATCATCACGATTCCTTTTTTGCGAA-TCTGGACGCGGGGC-AAATGTTTTCATAATGATTCACCTTGGATCAAAAATCGAGGGCAGG-----
i cb4.chrX              I 859 I 6
s caeRem4.Crem_Contig15   386132 337 -  1794024 tttccgcttctctt----gttccattc---cttttttctgagCAATTTATCACTCTTTTTAGTG--CTCATGGTGGTCAGTccctttcgttttttttccgagCTTTT---CC---------------------GACCGCCACCATAGAAAACTTTCCCTATTCTAAcgcttttgttttttc-ttttcctttttagttggttt-----------tttt----cttttgagaatcatgatttgatttc----tctc--gtatcgg--ctttttttgGCTCCTTTCTGAATCATTGCGAAACATAC------AACATGAAACATCATCACGATTCTCCTTTTGCCAATTCTGGGc----aac-aaatgtttttataATGATTCA-CTCAGACCAAAAATCAAGCAAAAA-----
i caeRem4.Crem_Contig15 I 17 I 476
s caeSp111.Scaffold582    393069 345 +   484378 TTTTTTACGCTCTC---TATGccattccc-tttttctccgaGCAATTTATCACTCTTTTTAGTG--CTCAGGGTGGTCAGTCCCTTCCCGTTTTTCTCCAAGTTTACCAGCC----------------------ATCTCTGCcatagaaaactttttcaatt-caaagcttttgtttcttccttttc--ttttagttttttt-----------tcct-----ttttgagaatcatgatttgatttg----tttt--ctatcgg--ctttttttgg-ttttttctgaatcattgCGAAACATACAATATGAACATGAAACATCATCACGATTTTTTCC---CCGATTCTGGAC----AGA-GAATGTTTTCATAATGATTCA-CAAAgatcaaaaatcgaatggGAAAAAA-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3551226 358 -  4147112 TTCTCCTTGCTCTCATTCTTCccattcccttttttttccgagcaaTTTATCACTCTTTTTAGTG--CTCCGGGTGGTCAGTCCCTTCCCATttct-tccaagttttttttcc---------------------gagcgcccccacaaaaaactttcccatttccaacgcttttgtttcttcgtttccttttttagtattttt-----------tcttttcacttttgagaatcatgatttgatttc----tttttcctatcgg--cttttttggt-ttttttctgaatcattgTGAAACATACAATATGAACATGAAACATCATCacgatttttt-----ccgattctggAC----AAACGAATGTTTTTATAGTGATTCA-CACAGATCAAAAACCGAAACGGAATAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I

a score=-8368.000000
s ce10.chrX              2899810 51 + 17718866 ------------AAACGTTTTTCACA-AA-GATTCGAAAGTCCAAGTTGAAG--TAT--AAATACTGAA-
s cb4.chrX              17648305 61 - 21540570 ggattttttttgaggtgttatgtttg-aaaaactcgaaaa---agtttgaaa--tag--aaaaatcgaa-
i cb4.chrX              I 6 I 1935
s caeSp111.Scaffold582    393414 48 +   484378 --CCGTTATATGTATTGTTCCATTTA-GA-----------------TTGGAA--GAGTAAAACATCTAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3551584 48 -  4147112 --ACCCGAC---TATTGTTGTATTTATAA-----------------TTGGAATTTGGGAAGAAGTCAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=-2578.000000
s ce10.chrX              2899861 76 + 17718866 TCAT------AACTACacacggaaaaat--gacaccaaaattggaattaggcttttttttcgaaaattcgaatcgtcataaaaa-
s caeSp111.Scaffold582    393462 72 +   484378 TTAC------ATATGCATGGGAAAAGTAGTGAGAATTGAATGAG----AGGTTTTGTTT--ATATTTACgtataatcagaaaaa-
i caeSp111.Scaffold582  C 0 I 284
s caePb3.Scfld02_0       3551632 52 -  4147112 TTATTAGATAACGTTCATTGGGAAGGAA--GATAATAgaat-------agattt------------------------gaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=-174.000000
s ce10.chrX              2899937 155 + 17718866 attatttaaaaaatgtttgaggcgtttaattacgaactttgttcatttgagcacattttgggtgtattcgttccaaacacccagaaccgttaccctctctttTTTGAAATTTCAGGTATTTTTTCAT-----TTTGCTGTCACTGATTAGAATATAGAAT
s caePb3.Scfld02_0       3551684 107 -  4147112 atca---aaaacaacattaATGGGTTTTGATA------TTGTTCTCTTTTGTGCAT----GGTAGATTcat---aaacac-------------------------------------attttttcatcaatatttcGCATGAACAATCAGAAAGTAAAAT
i caePb3.Scfld02_0      C 0 I 161
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeSp111.Scaffold582    393534 284 +   484378 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=0.000000
s ce10.chrX              2900092 148 + 17718866 ACGGACTGATTTTAAGCAGTACTTGACTGAGAAATGCTGGTCATGAATTTTAGTGATTTTTTAAGTTTTTTTTCGAGAGGTCATAATTCTTAAACTACAAAGTTTCAGCCAAACACTTTCAATCAGCAAAGTATTGCCCACAATTTTG
e caePb3.Scfld02_0       3551791 161 -  4147112 I
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeSp111.Scaffold582    393534 284 +   484378 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=-283.000000
s ce10.chrX              2900240 290 + 17718866 TCTATATGAGAACAGATATCGAAACACCTCAACAC----------AATTTTTG----CAAGACATACAGCGGTCGACATCTTGCAAGTCCACTTTTGATGGTTTTTGCTT----AAACGCTTGTAAATCAAGAACGAAACGTTTCCGT-GAAAATAAT-GCTGTGAAAAAAAAATTTGAATGTGATTTTGTATTTTTGTTACAATGTACCACATTTATCTAACTTCTCTAATAAAATGTTATTAAAAGAATTAGATTACATTA--TTTTTAAACTCACTTTTGGAACATGAATTTACAAGAGTTATTGCTTA
s caePb3.Scfld02_0       3551952 258 -  4147112 tttgaaaaaaaacagtaattgaaatcattcatttcttgATGAGTtagtttttattctcaa---atacGGTGAT-------------GTTCAGTTTTA--GACTTCTgcctttcaaaatatttatc---------tGAAATCTTTCTGTCAAAAATAATTGCCGTCAAGAA------TCGCTaccatttt-tactttttccattATGAATCTCATTGAGCCGAATG------------GTTACCGCTGGAATCAGAAAACCACAAATAGTTAGA--------TGGAATAAAGGTCtgcacaagttttttttga
i caePb3.Scfld02_0      I 161 I 121
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeSp111.Scaffold582    393534 284 +   484378 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=0.000000
s ce10.chrX              2900530 124 + 17718866 ATTACATTTTAGACATACAAAGATTAAAAATTAGCATTGAGAAAATTTTTACCACAAGTTTCAAAAAATGTGCCTCACTGAGACCACCGATTTGCTGGCAACTCGAGAACGAGTGAACTAAATT
e caePb3.Scfld02_0       3552210 121 -  4147112 I
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeSp111.Scaffold582    393534 284 +   484378 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=-2007.000000
s ce10.chrX              2900654 329 + 17718866 GAAACAATAGAAACTTTTTTTCCATGGAGATGTTTCGTATTTGAGTTG-AAGACGTTTCAAAAGAAGCCATTGAAAA----CAAGA--------------CCCGCGAGACGTCGGCCGTTTTATCTCCGGTCATAACTGTGTTGAGATTTTTTAATTGTAGTAGGCATGAAAAATTGTAGGCAGCAATTTCACAGTTGAATGTTTTATGCTAAAGGTTGTGGTTTAAGAGCTATGCAATT----TTGAATAGACTTATATCCGGCACTGTATAAGTTT----------TAAAAATGAA------GGAAAGGAGTGCCACTTCAATAGGAGAAATACAGTACTCAATTTTTGTTTTGTAAAAATTTGGT
s caePb3.Scfld02_0       3552331 314 -  4147112 gaaatgaaCCAGCCATCTATTCCTTATTGCTCCATCAAATTTGTGCGGGAAGACACGTGAA-------CATTGGAAAGGTCCaaagttccagtttttttgctcgtgaaccttc--tctttttgtcc---------attttgcggacatcc-------ggacgaaGCCCGGAAAA----AAGGATAGATCCCACA----AGTGTTTTATACA-------------TAAGAATTATATAGTTGGTCCTGATTACAATAAAATC------TTTATGAATTCACTTTCCTCATAGATATGCATTCCATAAAAAGCCAGGTTACGTACATAGCAGG--TGTTGGACCAACTGTCCGCTTTTTTAATAAATGAG
i caePb3.Scfld02_0      I 121 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeSp111.Scaffold582    393534 284 +   484378 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=1453.000000
s ce10.chrX              2900983 29 + 17718866 --------------AAAGCAAAAATAAAATTCTATAAATCTTG
s caeSp111.Scaffold582    393818 29 +   484378 --------------aaaacatcagaaaatcTCAGTAATCCTCA
i caeSp111.Scaffold582  I 284 C 0
s caePb3.Scfld02_0       3552645 43 -  4147112 ATGACGTTAAGAAGCAAACATCGAATCATCTCAGTAATCCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I
e cb4.chrX              17648366 1935 - 21540570 I
e caeRem4.Crem_Contig15   386469 476 -  1794024 I

a score=24621.000000
s ce10.chrX              2901012 64 + 17718866 ----CCACCACTGGTAACAGGTGGCGGACACCC----GGAGAGA-TTTTCATTCGACGTTGCGACATAAACAT
s cb4.chrX              17650301 48 - 21540570 ----CCATCACCAGCAACAGGTGGTGGACACCc----aacagaa------aaagaaggttGC-----------
i cb4.chrX              I 1935 C 0
s caeRem4.Crem_Contig15   386945 54 -  1794024 ----CCATCACTAGTAACAGGTGGCGGACACCC----GGAGAGA--TTTCAATGAAGGTTGCGA---------
i caeRem4.Crem_Contig15 I 476 C 0
s caeSp111.Scaffold582    393847 60 +   484378 CACCACATCACTAGTAACAGGTGGTGGACACCC----GGAGAGATATTTCGGCGAAGGTTGCGA---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3552688 64 -  4147112 CACCACATCACTAGTAACAGGTGGTGGACACCCAATGAGAGAAAGATTTCGGTGAAGGTTGCGA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   243127 1788 +   357190 I

a score=323010.000000
s ce10.chrX              2901076 528 + 17718866  
s cb4.chrX              17650349 567 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   386999 493 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    393907 499 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3552752 503 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   244915 561 +   357190  
i caeJap4.Scaffold17990 I 1788 I 1633

a score=18797.000000
s ce10.chrX              2901604 71 + 17718866 CGTGTAATTGAGACACCTTTTGAAACGATTGTTCTCGATGTTGTATTGTCACGGTTTTAT--------CCTTTCTTTCT------------
s cb4.chrX              17650916 78 - 21540570 TGTGTAATTGAGACACTATTTGACACGATTGC--------TTTCTTTCTTACTATTTT-TTCGACACAGCTTTGCTAGAAAAGTG----CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   387492 80 -  1794024 CGTGTAATAGAGACACT-TTTGACACTATTGTTCG-----TTGTTTTCTCACGCTTTT-C----CACATCTTTTGTTGAAGAATACTTTCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    394406 66 +   484378 CGTGTAATTGAGACACCTTTTGACACAATtgttctc----ttgttttctcacGGTTTT-T--------GCTTTCTTCAC------------
i caeSp111.Scaffold582  C 0 I 36
s caePb3.Scfld02_0       3553255 65 -  4147112 CGTGTAATTGAGACACCTTTAGAAACGATTGTTCG-----TTGTTTTCTCACGGTTTT-T--------GCTCTAAATGT------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990   245476 1633 +   357190 I

a score=-3304.000000
s ce10.chrX              2901675 21 + 17718866 --------------GTTTTTATTATGGTTTTTGCC
s cb4.chrX              17650994 19 - 21540570 --------------GGTTACAGTACCCATTTTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   387572 19 -  1794024 --------------ACGTATCATTCTACTTTTG--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3553321 33 -  4147112 GAAAGGAAACCTTTTGTCAAAACATCTGTTTCA--
i caePb3.Scfld02_0      I 1 I 6
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394472 36 +   484378 I

a score=-16930.000000
s ce10.chrX              2901696 195 + 17718866 TCCACATTCACAACAGTTTG---------------ATAATTGTT------------CAACAGCAAACA----------AAATCAGTTATGCGATTAAATTG---AAATAGGATTATGGTAATCAGT--------CCAGTGACACTGTTCAGTCGA-CTGGTTTTAA---TGATTTCGTTTTACAGTGT--TTTT-----TCGAAAACAAAAAAAG-----------TATTTGTGTATTT----------TGTATAACTCTACAATT--TTTTCA---ATT
s cb4.chrX              17651013 178 - 21540570 -----------AACAG------------TTCAGTATTAATGTTG-----------------ACAGTTGGTAATCCGATAAAccatttacaaaattt-------tcaatcgcATTATGGAAATAATACAAAATCGCCGTTGATACAGTTATGTTTT--GTTTGTCAGcgtcaa----aatattttttgt-----------tgaaaacatGATAACG-----------TC----------------------ATGTtgattcggaatt--tttgga---att
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   387591 214 -  1794024 -----------AACAGTcaa-----caattcaattttgatGTTA------------TGTTTACAGTCAGTTGCCGCCTAAAccatttataaaatttaacaAGACAAATCGCATTATGTTAATCAGACTAAATC---------ACAGTGATATTGT--TCTGCCCAATACCAA--TCGATATTTGATGTGGCTTTGaatgtgaaaaacagaaataa-----------tctgttttt--------------tgttttattttgtagtttgtttgAAACCATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    394508 227 +   484378 TTTACCTTTAGAACAGTCAGTTCCCCATTTTGTATCTATCAACt------------taaaaacaatca----------aaaccATTTAGAGCGTTAATCGG--AAAATCGCATTAtgataata-----gaa--------aataatgttttgtatt-ctgttttcaa---taa--ttgaTTGAAAGTGTGACTTT-----Cggtaaataaaaagagacatgtttgaatttctgtttttttcttactaaaatgtttcattatgagatt--ttttca---att
i caeSp111.Scaffold582  I 36 I 271
s caePb3.Scfld02_0       3553360 224 -  4147112 TTCATCTTTTGAACAGTCAA-----CATTGTAGTACTGTCGGTTTTAAACACGAAATAACAACAATCA----------AAACCATTTTAGAAGTTAAGTAG--ACAATCGCATTAtgttaataattttgaata-ccCGTGatactgttttgttttcctgttCTC-----CAA--TCGATTAGCGGTGTGAGTTG-----TGAAAAGtataaacag-----------tttttttttgagttttgagacCATGCGT-----TGAGAAT-------A---ACT
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I

a score=-4003.000000
s ce10.chrX              2901891 33 + 17718866 TCTCAATTGAACCA------TTTTGATTAAACAGGTCTG----------------
s cb4.chrX              17651191 25 - 21540570 -----ttcgaaatt-------tttgactctaaaagtt------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   387805 34 -  1794024 -----GTTGAAATCACTAacatttgataaaaaaaatttg----------------
i caeRem4.Crem_Contig15 C 0 I 184
s caePb3.Scfld02_0       3553584 35 -  4147112 --------------------ATgtgcttcaaaaagttagaTTTTATGAAGAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I

a score=-4952.000000
s ce10.chrX              2901924 164 + 17718866 --TTCAAATCGGTttaaaaatgaagtagagccagtggagaaatcgatttaaaacatacattttaaatatcatagtaacaaaatgttaaaaaattca--aaaaaaattaattttatgtt--------ttttgaaatttgataaaatctc-----------agtttgagcct--aactaaatttagattta
s cb4.chrX              17651216 139 - 21540570 cttgaaatccaaatttcg---tgAATAAA----ATAGTCGATTTGCTCTAAGAC------CTT------CAGAT---GACATTTCTGAGAAATTCTTC-------acaattttacttt--------ttttgaaattcttatgATTACCGTTCAGCCAATAATTTG-------TAATAAATTCA------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3553619 180 -  4147112 --TATAACTCAATTATAGGGTTGACCAAACTTTATTGAGGCATCAGTGCAAAAC------CTTGAA-AACAGATCAGAAGAgtgctcaaaaattgattaaagCAAACAATTCCAGCCTTGACAGcattttcaaactgaagaAAGCCcttttcattgaaaagtttgagtaaaagaataatttctgaatca
i caePb3.Scfld02_0      C 0 I 84
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-1144.000000
s ce10.chrX              2902088 97 + 17718866 ctgccaaacgatttgtttaa----ttgtatttatattttatt---------catttttctcattacc---tcatttaatttattt-----ttatgtatatttatcgaaaaatgatagc
s cb4.chrX              17651355 98 - 21540570 CTCataattggtttttttggggtttcgaAATGATTGTTGAGTGAATaagaacaattttcgaattttcagatcaattcacctattcaaacattttgtat--------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3553799 84 -  4147112 I
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-4636.000000
s ce10.chrX              2902185 142 + 17718866 aaaaggcaacataaatgcaaattgttcattaaaaaataattgaaaaatggtagaactgtgaaagtgaaaaaagtgtattttacagtgttttacagtgattttcaattattttc--a-----ataaaaaatttgcattt--------------atcatgttttt
s cb4.chrX              17651453 117 - 21540570 ------------------------TCCACTAAGG------TAAAgtacagtacca--gtcaataagA-ATCACAACAACGTAc--tttttttagttaattttccaccattttg--atagttttaaGAAATCTGGAGCTCGGCC---------GTCAGGTTTCT
i cb4.chrX              C 0 I 65
s caePb3.Scfld02_0       3553883 132 -  4147112 AAAAGACAA---------------TCCACTTA--------TAAATCAAAATGGGA--ATTGAGATGA----ACTgtacattaa--tttttttgattgattcttTGCCGTTTCGCTATGgacctttctcttttttggctCCACCATGTTCAGTATCAATgatct
i caePb3.Scfld02_0      I 84 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=142.000000
s ce10.chrX              2902327 60 + 17718866 tctttcattttccattaaaacaacgacaaaaaGTGAATAAATTCAGTGAAACAATAAAAA
s caePb3.Scfld02_0       3554015 41 -  4147112 tttctgatttt----------------gaaaatt---caagtgcATTCAAATGCCAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e cb4.chrX              17651570 65 - 21540570 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-2058.000000
s ce10.chrX              2902387 93 + 17718866 TGGAATAatagaaatgaaaaaaatcatgtaaaattttgaaaatgtg---atatttg--gatttatggaaccataggcgtgttttaaagaaatttccta
s cb4.chrX              17651635 80 - 21540570 TGGtgctaaaaatatgaaaaaagt------gttttccgaaaatcggcgtatagctgaaaaattaggaag------------tttgaagaaattcttta
i cb4.chrX              I 65 C 0
s caePb3.Scfld02_0       3554056 63 -  4147112 TGGCATTAGAAA------------------GTTTATC---AATTGGTGAATAGTAGTTGGCTTCTCTA--------------TTCAAGATGTTTCCCA
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=168.000000
s ce10.chrX              2902480 4 + 17718866 actg
s cb4.chrX              17651715 4 - 21540570 aatg
i cb4.chrX              C 0 I 33
e caePb3.Scfld02_0       3554119 47 -  4147112 I
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=0.000000
s ce10.chrX              2902484 39 + 17718866 gcgctactccaactttaataatgcaaataaatttttttg
e caePb3.Scfld02_0       3554119 47 -  4147112 I
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e cb4.chrX              17651719 33 - 21540570 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-344.000000
s ce10.chrX              2902523 63 + 17718866 CCAAAATTTTTTTAGGGCTC---AACTAATGAGCTTCTTTCCCTTTTCTTGCTATTGTTTTTGAGG
s cb4.chrX              17651752 44 - 21540570 ccaagattttcaaagtgatcggaaactgttcagccaagctcc----------------------ag
i cb4.chrX              I 33 C 0
e caePb3.Scfld02_0       3554119 47 -  4147112 I
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-8515.000000
s ce10.chrX              2902586 221 + 17718866 TGTTTTTAAAAGTATTTTTATTCGAAAAAAACGAGACTACATTAGTTCTCGAAGTAGATAATAACTAA------ATTTTAATTTTTTCCTTAAGTACACAAAATACCTCATTTCTTGTTGTAACACAAAAGTGCCGAAATTGTTTTTTTTTTTGAAAA------CTTCATAAATTTTGGGGGTCCTGTAGAAGTCCTGAAGTCCTGCGTACCGTGTTGATTCCCAAATTATGC-----
s cb4.chrX              17651796 154 - 21540570 -acttttgaaaacagtc---------------gaaat-------------------------gaccaa------aatttaactgaaaactacgtttt----tgtatatcttatagACTGGTACTAcagatgtttcaaaatttttctagattctggaaatttaggaACCTTAGTTTCTGATAGTCCATTTGAGTTCCTA------------------------------TATATTC---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3554166 144 -  4147112 TGTTTTTCAGAGCTGTC--ACTCGTTA-----GAGATCATATGAGCTC-------------CGACTCATTAGCTAATTTAactgttttcttcaattc----tgtaAATCAT------------------TTTCTCCAAGGTTTTCTC-----------------CACCATAATCT-TGACTGTTATCTTGAGAGC----------------------------------ATGTTCAAA
i caePb3.Scfld02_0      I 47 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeSp111.Scaffold582    394735 271 +   484378 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=-934.000000
s ce10.chrX              2902807 18 + 17718866 TTTAATAAATCTCGGAAG
s cb4.chrX              17651950 14 - 21540570 TCTAATATTTTCcc----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    395006 18 +   484378 tttgataaatcaTACAAG
i caeSp111.Scaffold582  I 271 C 0
s caePb3.Scfld02_0       3554310  9 -  4147112 TGCAATAaa---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I
e caeRem4.Crem_Contig15   387839 184 -  1794024 I

a score=7290.000000
s ce10.chrX              2902825 28 + 17718866 ------------------CCCCCCAAAAATTGCGATTGTCATCTTT
s cb4.chrX              17651964 25 - 21540570 ------------------cttttcaaaaact-cgatcC-AATCTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   388023 25 -  1794024 ------------------CCTCTCAAAAACT-CGATCA-AATCTC-
i caeRem4.Crem_Contig15 I 184 C 0
s caeSp111.Scaffold582    395024 44 +   484378 AACcagataaaaattattattctcaaaaact-cgATCA-AATCTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3554319 29 -  4147112 --------------tattattctcaaaaact-cgatCA-AATCTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   245476 1633 +   357190 I

a score=92646.000000
s ce10.chrX              2902853 238 + 17718866 T--TGACCTATTTATTGTATTTTCTCAA----AACGCATGGAATGCGAATCATTCTATCTGAAAATTTATATCGCACTC--------TTGTCTTACTTCGACCCC--------CTATTTA----------------------TATTCTTCTCCC--------GTTGTTGGAAAAT----ATGTAGATCGTATCGTTCCG-----CAAAAGGT--------CTTGTTGTTCT----------C-ACATTCGCG----TGGTATCTTCCGAAAATCTGTCTTTGCGTTGTCG--AGAACCGCCC-AACACCCTGCATATTTTTATCA
s cb4.chrX              17651989 293 - 21540570 CCATGACCCA---GATATAAATTCCACGGTTCATTCTGCGGAATGCGAAtcattttatctgaaaatttatatcGCCCTC--------TTGTCTCTTTTC--CCCTGTCTTCCATTATTCACTCCCCTCCCCCGGCAACCTCTTCATGTT--CTCCACACCGTGTTGTTAGAAGAT-----TGTAGATCGTATCATTCCC---GAGAAGAGGTCGCGCTTCACTGTTGTTCTTCAGTTCTTGC-GTTTTC-CGCGCTCGGTATCTTCTGAAGATCTGCG-TTGCATAGTTG--AGAACCGCCTCC----CACGCATACTTTTATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   388048 246 -  1794024 T--TGACC-------TATATATTCGAGA----ATCTTACGGAATGCGAatcattttatctgaaaatttatatcgCCCTC--------TTGTCTCACTTC--ACCT--------CTATATA----CCTCCACGG---------TCATGTTCCCTCAACACCGTGTTGTTAGAAGAT----ATGTAGATTGTATCGTTCCC---GAGAAAAGG--GGTCTTCACTGTTGTTCT----------C-GCAACC-CG----TGGTATCTTCTGTAGATCTGTC-TTGCATAGTT----GAACCGCCT-A----TATGCATACTTTTATCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    395068 234 +   484378 C--TGACC---------TATATTCTAGA---TGTATCGCGGAATGCGAATcattttatctgaaaattcatatCGCACTTCTTTCC--ACGTCTCATTTC--TCAA--------CCGTTTA----CCCTC-------------ACGTTT---CTCGACGCTCTGTTGTTAGAAGAT----ATGTAGATTGTATCATACCGA--GAGAGGAGGT---------CTGTTGTTCT----------C-GCGACC-CG----TGGTATCTTTTCAAGATCTGTT-TTGCATAGTT----GAACCGCCT-A--------CATACTATTATCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3554348 250 -  4147112 C--TGACC---------TATATTTGGGG---TGTTTCGCGGAATGTGAAtcattttatctgaaaatttatatcGCCCTTCCTTCCCAAAGTCTCATTTC--TCCA--------CTTTTGT----CCCCC-------------TAATATTCCCTCAACACTGTGTTGTTGGAAGAT----ATGTAGATCGTATCATTCCGAGTGAGAGGAGGT----CTTGACTGTTGTTCT----------C-GCGACC-CG----TGGTATCTTTTGAAGATCTGCC-TTGCATAACA----GAACCGCCT-A----CACGCATACTTTTATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   247109 199 +   357190 T--TGACC---------TA-ATTCTAGT-----ACTAGCGGAATGCGAATCATTTTATCTGAAA------ATCGCCCCC--------CTGCCCTCCTTT--GTCT-------------------CCACT----------------------CTCAACACTTTGTTGTTGGAAGAAGACGATGTAGATCGTATCAT---------------------------TGTTGTTCT----------CGGCGGCC-CG----TGGTATCTCCCGAAATCTTTCC-ATACATACATACCAGAACTGCCT-T--------Cacacttttatca
i caeJap4.Scaffold17990 I 1633 I 428

a score=3312.000000
s ce10.chrX              2903091 38 + 17718866 GGAATAATTTCACTTACCT-------GGTAATTAGAGGTGCGTAA
s cb4.chrX              17652282 29 - 21540570 G----ACCACTACTCACTT------------TTGGTAGTGtgtaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   388294 40 -  1794024 G----GCCAC-ACTACCTTTATTCTGGATAATTGAAGGTGTGTAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    395302 30 +   484378 G----ACATTTA----TTT-------CGTAATTAAATGTGTGTAA
i caeSp111.Scaffold582  C 0 I 72
s caePb3.Scfld02_0       3554598 34 -  4147112 G----ACCTTCACACTTTT-------GGTAATTAGAGGTGTGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   247308 428 +   357190 I

a score=546.000000
s ce10.chrX              2903129 1 + 17718866 A
s cb4.chrX              17652311 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   388334 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 I 200
s caePb3.Scfld02_0       3554632 1 -  4147112 A
i caePb3.Scfld02_0      C 0 I 98
e caeJap4.Scaffold17990   247308 428 +   357190 I
e caeSp111.Scaffold582    395332 72 +   484378 I

a score=15.000000
s ce10.chrX              2903130 5 + 17718866 CGGTC
s cb4.chrX              17652312 5 - 21540570 tattc
i cb4.chrX              C 0 I 168
e caePb3.Scfld02_0       3554633 98 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e caeSp111.Scaffold582    395332 72 +   484378 I
e caeRem4.Crem_Contig15   388335 200 -  1794024 I

a score=0.000000
s ce10.chrX              2903135 606 + 17718866  
e caePb3.Scfld02_0       3554633  98 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652317 168 - 21540570 I
e caeSp111.Scaffold582    395332  72 +   484378 I
e caeRem4.Crem_Contig15   388335 200 -  1794024 I

a score=611.000000
s ce10.chrX              2903741 17 + 17718866 cacttttcccactggtg
s caeSp111.Scaffold582    395404 17 +   484378 caatttccttcCTGTTG
i caeSp111.Scaffold582  I 72 C 0
e caePb3.Scfld02_0       3554633 98 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652317 168 - 21540570 I
e caeRem4.Crem_Contig15   388335 200 -  1794024 I

a score=-352.000000
s ce10.chrX              2903758 61 + 17718866 ---ctacCTCTTCGAGCACAAGTT------------GTTTGGAAACACACATGCCTCAATACCCCTCCCGTTTTTA
s caeSp111.Scaffold582    395421 66 +   484378 ---TCAAATTTACAAtcacagtttcaaaatgacacCACCTGCAAACACCCCC----GTAATTACCTTTTGCTT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3554731 60 -  4147112 CTTCCTCTTTTAGCATCATAGAT-------------GTTTCCAAACACCCCCGCTTGCAATTACCTCCTGTCT---
i caePb3.Scfld02_0      I 98 C 0
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652317 168 - 21540570 I
e caeRem4.Crem_Contig15   388335 200 -  1794024 I

a score=51394.000000
s ce10.chrX              2903819 136 + 17718866 AACCTGAAATTGGTCAGTTGTTATCAGTTTTCACCAAAAACGCAAACAAACACACACACACAACCTATAAGGACGGACAAGGAGTCGCTGCTCTCCAAATTTATTGTTTTAGTGTTATTTCCCAAAGAGTGTCCTA
s caeRem4.Crem_Contig15   388535 129 -  1794024 AATGTGGAATTGGTCAtttgttatcagtttt---ttgaaacgcAAACAAAC--AGAGACACAACCTATGAGAACGGACAAGGAGTCGCAGCTCTCCAAACTTATTGTTTTAGTGTTATTT-TCAAAGAGTGTCCT-
i caeRem4.Crem_Contig15 I 200 C 0
s caeSp111.Scaffold582    395487 122 +   484378 AATATAGGAATGGTCATTtgttatcagtttt---ttgaaacgcaAACAAAT----AGACACAACCTATGAGAACGGACAAGAAGTCGCAGCTCTCCAAACTTATTGTTTTAGtgttattt-tcaaagagt------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3554791 125 -  4147112 TATAAGGAATTGGTCAtttgttatcagtttt---ttgaaacgcaAACAAAC----ACACACAACCTATGAGAACGGACAAGGAGTCGCTGCTCTCCAAACTTATTGTTTTAGTGTTATTT-TCAAAGAGTGTC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652317 168 - 21540570 I

a score=88376.000000
s ce10.chrX              2903955 422 + 17718866 CTTCTCCTTCTCTCTCTCTCT------CTCCTAACCCTCTCGA---TC-TTTCCTTTTCATTTTTTGG--------TGTTGCCTCC----AATTTCTTATGTTTGTCTCAACTTTTTTTTGTCTGTCA---------GTGATGACCAGTGCA------GAAACAT--ATCCTTCATCATCCGTCCCTCTACTCGACCCTCCAATCTTTCCACTATCCGTTTATCTATTGTGAACTGAC----GCCACTCACTCACT--CGACGTGTTCGT---TTCATCAAG---AGATGTCCGTCGTTTCCC--AACTAATGCTTCATGAtgtgtatgtatgtatgtgtgtgagtgtgtgtgtg-----GGGG---GC----------TTAGAACGGAACAAAAATGCTATAAATTGTTGGAGAGTGCGAGAGGCAAAATCAAGTTCTGTCCTTCATTTTATTTATAAATGAGTGACACGACTTTCGG-TATGATTCATTACT
s cb4.chrX              17652485 392 - 21540570 ------ctcctctctctctct------ct-----ctctctccaaacTT--ATTGTTTTAGTGTTATTTTCAAACAGTGCGTTTCTCTGAGAGGTTTgtatgtt--tttcattttttctgttcttgtCAGTGGTTGAGATGATGACCACTGCAGAAAACGAAACATA-AACCT---TTATCCATTCC-----------CTCCAAatatccttttctttttttcttc------------c----aacacTCATT---------TCTGTTCGTTTCTTCATCAAGAGAAAATGTCCTC--TATCTCAAAACTAATGCTTCATGATGGGT----------------GGGGATGAGAGGGGAGGAGATG---ACGGCCTCACATTCAGAACGGGAACCAAAACGTGATGAATGAGTTAGAA--AGGGAGGGAGAATCAAGTT-TACCC----------------ATGACAGGAGAGACTTT-GGTTATGATTCATGATT
i cb4.chrX              I 168 I 886
s caeRem4.Crem_Contig15   388664 340 -  1794024 ------------TCTCCAGAG------CA-----TCCTCTCGA---tc--ttttcttcggtttttttt--------tgggtttttc------gtttgtatgtttgtttcaatttt--------------------------tgaccactGCA------GAAACAT--ATCTT---TTATCC-TTCG-----------TTCCCTATATCCTTCTATCTCTTTCTACA-----------C----ACCACTCGTTTGATGGCGATGTGTTCGT---TTCATCAAG---AAATGTCCGTCGTTTCTCAAAACTAATGCTTCATGATGTGT--------------------ATGTGAG-------GATG---AC----------TTAGAACGGGAACCGAATTGTGATGAATGAAAGAGAGTTAGAGAGGAATAATCAAGTTCTACCCCtcattttatttataaatGAGTGACATGACCAT-GG-TATGATTCATTACT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    395609 373 +   484378 ---------CTCTCCCaaaaaaaCACTCT-----CCCTCtcga---tcttttttctttagtttttGCT----GCCCTGTCTTTCTC------GTTCGTATGTTTGtctcaatttt--------tgtcaat------gATGATGACCAGTGCA------GAAACATATATCCT---TTATCCATTCC-----------CTTC-----TTCCACTATCTTTTCAAACA------ACACGC----CACACTCATTCAATGTCGATGTGTTCGT---TTCATCAAG---AGATGTCCGTCGTTTCCC--AACTAATGCTTCAtgatgtgt--------------------gtgtgtggg-----TATGCGAGG----------CAGGAACGGAACAGAAAtatgaatgaattgaagagaattagagatgaaaaatcaagttttacccttcattttatttataaaTGAGTGACACGAATTA-GG-TATAAATCTTAACT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3554916 346 -  4147112 ---------CTCTCCTCCAAA--------------CCTCTCGA---TC-TTTCCCTTTGGTTTTTG--------------TCTTTC------GTTTGTATGtttgtctcaatttt--------tgtga---------gtGATGACCGGTGCA------GAAACATATATCCT---TTATCCATCCC---------------------TTCACTATCTTTTCGAACA------ACACACCCTACACTCTCATTCAATGTCAATGTGTTCGT---TTCATCAAG---AGATGTCCGTCGTTTCCC--AACTAATGCTTCATGATGTGT--------------------ATGTGAGAG-----AATG---GC----------TTAGAACGGAACCAAAAGAATAATGAATGAGAGAGAGTTAGagatgaaaaatcaagttttacCCTTCATTTTATTTATAAATGAGTGACACGACTTT-GG-TATGAATCATTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   247308 428 +   357190 I

a score=1559.000000
s ce10.chrX              2904377 6 + 17718866 CGAAAT
s caeRem4.Crem_Contig15   389004 6 -  1794024 GAAAAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    395982 6 +   484378 TGGAAT
i caeSp111.Scaffold582  C 0 I 87
s caePb3.Scfld02_0       3555262 6 -  4147112 CAAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652877 886 - 21540570 I

a score=300.000000
s ce10.chrX              2904383 1 + 17718866 G
s caeRem4.Crem_Contig15   389010 1 -  1794024 G
i caeRem4.Crem_Contig15 C 0 I 72
s caePb3.Scfld02_0       3555268 1 -  4147112 G
i caePb3.Scfld02_0      C 0 I 496
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652877 886 - 21540570 I
e caeSp111.Scaffold582    395988 87 +   484378 I

a score=0.000000
s ce10.chrX              2904384 923 + 17718866  
e caePb3.Scfld02_0       3555269 496 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652877 886 - 21540570 I
e caeSp111.Scaffold582    395988  87 +   484378 I
e caeRem4.Crem_Contig15   389011  72 -  1794024 I

a score=458.000000
s ce10.chrX              2905307 11 + 17718866 TTGTTTCTAGA
s caeRem4.Crem_Contig15   389083 11 -  1794024 TTGTATTTACA
i caeRem4.Crem_Contig15 I 72 C 0
e caePb3.Scfld02_0       3555269 496 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652877 886 - 21540570 I
e caeSp111.Scaffold582    395988 87 +   484378 I

a score=-2131.000000
s ce10.chrX              2905318 42 + 17718866 ---ATTTATT-----T-----TTTGAAACAATATTTTGAACTTCTACACGAACTT
s caeRem4.Crem_Contig15   389094 47 -  1794024 GATAGTTGTTTGAGCTGACCATTAGATCTGCCAGTTTA--CCTCCAAac------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396075 39 +   484378 ---ATTTATT-----TCCCCATTGGAAGCAGTGACTAG--TTTCTACCA------
i caeSp111.Scaffold582  I 87 C 0
e caePb3.Scfld02_0       3555269 496 -  4147112 I
e caeJap4.Scaffold17990   247308 428 +   357190 I
e cb4.chrX              17652877 886 - 21540570 I

a score=61.000000
s ce10.chrX              2905360 11 + 17718866 CTATAGTTACA
s caeRem4.Crem_Contig15   389141  7 -  1794024 ----aattgca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396114  7 +   484378 ----AATCgta
i caeSp111.Scaffold582  C 0 I 8
s caeJap4.Scaffold17990   247736 11 +   357190 CTaggttttct
i caeJap4.Scaffold17990 I 428 C 0
e caePb3.Scfld02_0       3555269 496 -  4147112 I
e cb4.chrX              17652877 886 - 21540570 I

a score=1820.000000
s ce10.chrX              2905371 2 + 17718866 TT
s caeRem4.Crem_Contig15   389148 2 -  1794024 tt
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    396129 2 +   484378 tt
i caeSp111.Scaffold582  I 8 C 0
s caePb3.Scfld02_0       3555765 2 -  4147112 tt
i caePb3.Scfld02_0      I 496 C 0
s caeJap4.Scaffold17990   247747 2 +   357190 tt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17652877 886 - 21540570 I

a score=60151.000000
s ce10.chrX              2905373 173 + 17718866 TTTTG--TTTCGGTGAGGTCATTTCCCGGATCTGCCGGCCTCCACTCTC-------CACCACTGTCGATAAACAACTA--------GGTCTGGACT-TT--GC-------GCATGGCAA-------CAACAA------TATTTTTCGTTTCCT-CCCTTTCTTTT------------TTCTTTACATTTACCTTTCGGTCT---------TATTTA-TTCATTC----AACTCCTTG-TTT----
s cb4.chrX              17653763 218 - 21540570 tcttt--ttcatg-AAGGTCATTTTCCGGATGTGCCA--CCGCCATcacacacacacaGTG-CGTCGGCGAACAACAAACCCAGGTGGTCTAGACT-TTCGGC-------GCGTGGCAAC--ACACCAATTTCTTCCCCTTCTTcgatttctt-cctcttctcccaACAACCACCATTTCCTTACATTCACTTTTCGGCCCCTGTCACTTTTTCTA-TTCATTCACCGAACTC-----TTC----
i cb4.chrX              I 886 I 66
s caeRem4.Crem_Contig15   389151 180 -  1794024 ttttg--tgtATGCAAGGTCATTTTCCGGATGTGCCA--CCACAATCGC-------CATTG-TGTCGGCGAACAACAAACCCTGGAGGTCTAGACT-TT--GC-------GCGTGGCAg-------caattt------ctttttcgatttcttatttcttttccc--------ccatttccttacatttacctttcGGCCC---------TGTCTA-TTCATTCA---AACTC-----TCT----
i caeRem4.Crem_Contig15 I 1 I 54
s caeSp111.Scaffold582    396131 186 +   484378 ctccagtTCCAAGCAAGGTCATTTTCCGGATGTGGCA--CCACAATCGC-------CACTG-TGTCGGCGAACAACAAACCCTGGAGGTCTAGACTCTT--GC-------GCGTGCCAg-------caattt------cttcttcgatttctt-tttcctcctct--------tcccatttttaCATTTACCTTTCGGCCC---------TGTCTA-TTCATTT----AACTCCTTGTTTC----
i caeSp111.Scaffold582  C 0 I 45
s caePb3.Scfld02_0       3555767 162 -  4147112 cttcg--tgtATGCAAGGTCATTTTT----------------------C-------CACTC-TGTCGGCGAACAACAAACCCTGGAGGTCTAGACT-TT--GC-------GCGTGGCAG-------CAattt------cttcttcgatttctt-tcctctcttca--------ttcctttcttacatttacctttcGGCCC---------TGTCCA-TTCATTC----AACTCCTTG-TTC----
i caePb3.Scfld02_0      C 0 I 46
s caeJap4.Scaffold17990   247749 179 +   357190 ctttt--ccgcCGCGAGGTCACTTTCCGGATG------------------------------TGCCGGTAAACAACAAggggggg-ggTCTAGGTT-TG--GCAATTTCTGAGAGACatttacctttaaatt------tacatttacttttac-ctttctgtttt--------ctttttcattacgttt-cgtttcgttcc---------tctctgtttcgttc----ctctttttc-ttttttt
i caeJap4.Scaffold17990 C 0 C 0

a score=4147.000000
s ce10.chrX              2905546 21 + 17718866 TGCTTTGGATAGTGTCGAGTT
s caeRem4.Crem_Contig15   389385 18 -  1794024 TCTTTTGGG---TGTCGAGTT
i caeRem4.Crem_Contig15 I 54 C 0
s caeSp111.Scaffold582    396362 20 +   484378 cgttttggG-GCTGTCGAGTT
i caeSp111.Scaffold582  I 45 C 0
s caePb3.Scfld02_0       3555975 18 -  4147112 --ttttGGG-GCTGTCGAGTT
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold17990   247928 21 +   357190 tcccccagtcattgttctatt
i caeJap4.Scaffold17990 C 0 I 52
e cb4.chrX              17653981 66 - 21540570 I

a score=2364.000000
s ce10.chrX              2905567 41 + 17718866 GTGAACTGAGAATCGGTCTTGCAGCTGCAGCAGACACACAC
s caeRem4.Crem_Contig15   389403 18 -  1794024 GTGAATT--GAATC-TTT--------------------CGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396382 19 +   484378 GTGAATC--GAATCGGTT--------------------TGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3555993 19 -  4147112 GTGAATT--GAATCGGTT--------------------CGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   247949 52 +   357190 I
e cb4.chrX              17653981 66 - 21540570 I

a score=1937.000000
s ce10.chrX              2905608 13 + 17718866 ---ATTTTTTACTTAA-----
s caeRem4.Crem_Contig15   389421 13 -  1794024 ---TTTTTCAATCTAA-----
i caeRem4.Crem_Contig15 C 0 I 19
s caeSp111.Scaffold582    396401 13 +   484378 ---TTTTTCGATCTCA-----
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3556012 13 -  4147112 ---TTTTTTGATCTCA-----
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17990   248001 21 +   357190 gtttttttttccttcccttCA
i caeJap4.Scaffold17990 I 52 C 0
e cb4.chrX              17653981 66 - 21540570 I

a score=46076.000000
s ce10.chrX              2905621 68 + 17718866 -------------CGCTCCGTTCGGTAC-----------GGTTTTGTATGTCACCTGTTTGTTTTTGATGACCAAAACATTCCA-TTCGACAC
s cb4.chrX              17654047 78 - 21540570 -------------catttcgttCGATACGTTTTG--GGAGGTTGCCTGTGTCACCTGTTTGTTTTTGATGCCCAAAACATTCCATTTCGACAC
i cb4.chrX              I 66 C 0
s caeRem4.Crem_Contig15   389453 65 -  1794024 -------------TCTCCCGTTCGATACGTC--------GGT------TGTCACCTGTTTGTTTTCGATGACCAAAACATTTCA-TTCGATAC
i caeRem4.Crem_Contig15 I 19 C 0
s caeSp111.Scaffold582    396430 67 +   484378 -------------TTTCTCGTTCGATACCCCTT------AGT------AGTCAcctgtttgtttttgatgaCCAAAACATTCCA-TTCGATAC
i caeSp111.Scaffold582  I 16 C 0
s caePb3.Scfld02_0       3556040 61 -  4147112 -------------TGTTCCGTTCGATAC------------GC------TGTCACctgtttgtttttgatgacCAAAACATTCCA-TTCGATAC
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   248022 86 +   357190 CTTCTCGCTCACTCGTACcgttttttactttttttcttctat------ccGCACCTGTTTGTTTTTGATGACCAAAACATTCCA-TTGAACAC
i caeJap4.Scaffold17990 C 0 I 631

a score=7972.000000
s ce10.chrX              2905689 22 + 17718866 TGTTTA-TTGAA--GTGTTGATTCA
s cb4.chrX              17654125 23 - 21540570 TATTCACACCGA--TTGTTGATTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   389518 19 -  1794024 TATTCA----AA--GTGTTGATTCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396497 25 +   484378 TATTCACGCCCGTTGTGTTGATTCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556101 23 -  4147112 TATTCACACCGA--GTGTTGATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   248108 631 +   357190 I

a score=-8535.000000
s ce10.chrX              2905711 108 + 17718866 CTTATTCATTCGGTATATTAAATGTCTGACAGGGACAGACGTACGCGCTACAAATCAAATGTCAACTTTTTTTTGTTGAAAATAACCGTAGTTGTACATATTTTTGGA-----
s caeRem4.Crem_Contig15   389537  45 -  1794024 -----------------------GTC---------------------------ATCG---------TTTTCAGTgttgaaatc---------taaaaatgttttttgctaAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396522  16 +   484378 -------------------------------------------------------------------TTTTAATGTcgaaaac------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556124  16 -  4147112 -------------------------------------------------------------------TTTTAgtgttgaaaat------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   248108 631 +   357190 I
e cb4.chrX              17654148   0 - 21540570 C

a score=-18645.000000
s ce10.chrX              2905819 109 + 17718866 TTAAACGTGGAGTATAgccaatggcactagattgactaaatatctagttaaaaagttcaaaaaattt-ctatatttttttaagagatttttttttgaaaattgaaaaTTT
s cb4.chrX              17654148  77 - 21540570 GTAAATGttgaatactg-------------------taaaacctacATAGAGATACC-AAAACattt-tagcaaattttt----gctcttcttttgaatatt--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   389582  13 -  1794024 -----------------------------------------------------------------------------------------TCTTCTAAATGTT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396538  31 +   484378 -----------------------------------------------tgcaaaaaacgaaaacattTAC--------------------TCTTCAAAA------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556140  33 -  4147112 -----------------------------------------------tcgaaaaaccgaaaacattt-c--------------------actcaaaaatct---------
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold17990   248108 631 +   357190 I

a score=-15663.000000
s ce10.chrX              2905928 192 + 17718866 ATCAGTTTTTGTAACTTTTTGGAAGTCATTTTGCAATTCGTAGATCCAAAGAAATTTTTTTTTTCGAATATTATGGTCTAGATTTCTTGCAAATATTAATATTAAAACATTGTAGGGGTTCAaaaatgcttcaaaaatttttttgaaaagttttactatgacatttggtcattttgaaaccataagagtgaA
s cb4.chrX              17654225  85 - 21540570 ----------------------------tttta-----catAAAT-----------------TGCATATTTTATCACATC----TCCTGGGAACATT----TTAAAGTAT-----------ATAAATGCTT-------------------------TATGAATTCGAGCTTCTCCCAAA-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   389595  84 -  1794024 ----------------------------TTCTG---TTCATGAATA----------------TGCATGTCTAATAGTTCG----TCTTGAAAG----------AAAAAGG-----------GTAAATG-TT-------------------------TGTAGATGTGAGATATTTGCATGCAA----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396569  85 +   484378 ------------CACTtcataaacatt-tttcg---tcCATGATTA----------------TGCATACTTAATGGATTG----TCCctagag----------aaa---------------------------------------------------atgaaagtgagACATTTGCATGCAA----------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3556173  94 -  4147112 I
e caeJap4.Scaffold17990   248108 631 +   357190 I

a score=10215.000000
s ce10.chrX              2906120 63 + 17718866 TAAACTTTCATTTGTTTCATCAA--TTTTTTGCCGTCCAATCATCC----TACGTAATG---TTCGTTGTCA----
s cb4.chrX              17654310 50 - 21540570 ----------------------ACGCCCTGTGTCGTCA----GAAGAAGCTGCGTAATAATTTCTGGTGTCGGGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   389679 69 -  1794024 CGAGCCTCCACGTGTATCATTCACTCTTTCTGTCGTCAGTTCGGAGAAGACGCCTAATG---TTCGGTGTCG----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396654 64 +   484378 CGAGCCTTCACGTGTGTCATT---GCGCTCTGTCGTCAGTTTTGTT--GGCGCGTAATG---TTCGGTGTTG----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556267 67 -  4147112 TGAGCCTTCACGTGTGTCATTCACTCTTTCTGTCGTCAATTCTACT--GGCGCGTAATG---TTCGATGTTG----
i caePb3.Scfld02_0      I 94 C 0
e caeJap4.Scaffold17990   248108 631 +   357190 I

a score=245227.000000
s ce10.chrX              2906183 454 + 17718866  
s cb4.chrX              17654360 490 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   389748 451 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    396718 455 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556334 436 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   248739 392 +   357190  
i caeJap4.Scaffold17990 I 631 I 57

a score=-108154.000000
s ce10.chrX              2906637 423 + 17718866  
s cb4.chrX              17654850 385 - 21540570  
i cb4.chrX              C 0 I 88
s caeRem4.Crem_Contig15   390199 221 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397173 174 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3556770 368 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249131  57 +   357190 I

a score=-8400.000000
s ce10.chrX              2907060 54 + 17718866 TAC--AAAGTACAAGT-AATTTATC--AAT---TTTCAGAATAACATTTTTTGTAAACATCT---
s caeRem4.Crem_Contig15   390420 43 -  1794024 GACCGATTCGacagaa-aatttaga--------attcaaGAT-------------CAGAGCATCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397347 35 +   484378 -----aagtttcaaatctATTTATAATAATGCCGTTCC----------------------CT---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3557138 36 -  4147112 --------TTACAAAT-GATTTACACTATT---GTTCCGGA--------------CAAAACT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249131 57 +   357190 I
e cb4.chrX              17655235 88 - 21540570 I

a score=-20607.000000
s ce10.chrX              2907114 104 + 17718866 AAGAAATTTTTTGCACAACTacaactcgcctgaaccttctctggagcaactaaattttttgaaggaaacaCAGGATGTCGAATAGAAAAATGTATATCTTCCCT
s cb4.chrX              17655323  71 - 21540570 AACCAATTTCTATCTTTAAC-----------TAGCCTGTTCTCAAGCGATAAAACTT----------------------AATCGAACGCAAGTTCCCTCCTCCC
i cb4.chrX              I 88 C 0
s caeRem4.Crem_Contig15   390463  38 -  1794024 AAAAAACT--TATCATTAGT-------------GACTTTTCCCGTCCG---------------------------------------------------TTCCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397382  57 +   484378 -ATGAATTGACACCTTATTCA--------TAAAATCTGATTGCGAATT--------------------------------------TGCATGCGAAAATATTCT
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3557174  55 -  4147112 -GGTAAATGctcttttattc----------caatccttgtttcaatcc--------------------------------------ttcttctctctctttcct
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold17990   249131  57 +   357190 I

a score=-6198.000000
s ce10.chrX              2907218 37 + 17718866 AGTTAGGCTTGAGTCATTGCCGCATATTT--TTGCC-TCG--
s cb4.chrX              17655394 27 - 21540570 ---------------CTTCTTCCTTTCGTTGTTATCAACCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   390501 24 -  1794024 ---------------ACTAGTTCATTCGT--TTATC-ACCAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397441 26 +   484378 TGTCAG--------TGTCAACATATCCTT--TCACC------
i caeSp111.Scaffold582  I 2 C 0
e caePb3.Scfld02_0       3557229 25 -  4147112 I
e caeJap4.Scaffold17990   249131 57 +   357190 I

a score=-4343.000000
s ce10.chrX              2907255  79 + 17718866 TTGACACTTTATTCATATATCTGATTACAAAAGATGTCCTT-----AAAATTTCG---------GTGTCAAACCA-----------------TCCA---CCCCTTGGGGCG----GT
s cb4.chrX              17655421  77 - 21540570 TTGACACCTCATTTATATATCTGATTGCCGAATTTGTTCAtttctgaagacgtcg-------------------------------------atCG---TCTTGTCGGACGCTCGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   390525 109 -  1794024 TTGACATCTAATTTATATATCTGATTGCCGAA----TTCATTTGAGAAAACGTTGCTTTCGACACTGTCAATATACCTTTTCACTCGTTTTCACCG---ACCCATCAGACG-GCGGC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397467  25 +   484378 -------------------------------------------------------------------------------------TATTCTTACCG---CTCGTTCAGATA----TT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3557254 113 -  4147112 TTGACACCTCATTTATAAATCTGATTATATGAATTTGTCTcttgaagatttttcattgTCATCAGTGTCAAAATACCTTTTCACCTATTTCTACCGCGCCCCGTTCAGTCG----GT
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold17990   249131  57 +   357190 I

a score=279977.000000
s ce10.chrX              2907334 681 + 17718866  
s cb4.chrX              17655498 595 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   390634 636 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    397492 611 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3557367 610 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   249188 685 +   357190  
i caeJap4.Scaffold17990 I 57 I 58

a score=29150.000000
s ce10.chrX              2908015 66 + 17718866 CATC----------GTTCGCTTCCTTCAGCACTTTTATTTATAATCCAGTAATTTGTCGTCTTTCTGTTTTCCATC
s cb4.chrX              17656093 57 - 21540570 CATC-------ATCTTACACAGCCAACAGCACTTTTATTTATAATCCAGTAATTTGTCGTCATT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   391270 64 -  1794024 catctccttttttcctctACTCTCCACAGCACTTTTATTTATAATCCAGTAATTTGTCGTCACT------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    398103 61 +   484378 catc---ttttcctctttcctcTCCCCAGCACTTTTATTTATAATCCAGTAATTTGTCGTCTCT------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3557977 60 -  4147112 catc---ttcttctctttcctc-cTACAGCACTTTTATTTATAATCCAGTAATTTGTCGTCTCT------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249873 58 +   357190 I

a score=27689.000000
s ce10.chrX              2908081  97 + 17718866 AACGTTTTGA-----------------------------AATCCAAATCGGTTACATTCCTTGACCTCGATAGCGTTTTGTCCC-------ACATTATT---------------TATATTTGAGT-CCATTTTTAGATTTATTTGTTTT
s cb4.chrX              17656150 113 - 21540570 ---------GAGaagggagaagagaaaa-----------aatccaaatccgTTACATTCCTTGACCTCGATTCCGT--CGTTCC-------ACATTGTTC----CCCCCACTAATCCATCTTAGt-cagcattt--ttttctttgtttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   391334  93 -  1794024 ---------G-----------------------------AATCCAAATCCGTTACATTCCTTGACCTCGATTTTGTTCCGTTCC-------ACATTGTtt----cctc------tccatttttgt-catttctcagttttctttgtttc
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    398164  90 +   484378 ---------A-----------------------------AATCCAAATCCGTTACATTCCTTGACCTCGATTTTGTTCCGTTCTCCACTTCCTATtgtt------ctt------tccatttttgtatatttctTGGCTTT---------
i caeSp111.Scaffold582  C 0 I 541
s caePb3.Scfld02_0       3558037  84 -  4147112 ---------G-----------------------------AATCCAAATCCGTTACATTCCTTGACCTCGATTCTGTTCCGTTCT-------CTATTGTTC----CCCT------tccatttttgt-catttcttaccttt---------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17990   249931  87 +   357190 ------------------------AACACTTTAATTTCTAATCCAAATCCGTTACATAGCTTGACCtcgtttttgatt-------------ttaatacttgaagcctt------ttttttttttt-cattt------------------
i caeJap4.Scaffold17990 I 58 C 0

a score=-731.000000
s ce10.chrX              2908178 10 + 17718866 AATCCA--ACTT-
s cb4.chrX              17656263 11 - 21540570 -aatCAGCACTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   391427  9 -  1794024 -aaccA--ACTT-
i caeRem4.Crem_Contig15 C 0 I 649
s caePb3.Scfld02_0       3558130  9 -  4147112 -aacaA--AGTT-
i caePb3.Scfld02_0      I 9 I 1
s caeJap4.Scaffold17990   250018 10 +   357190 -tttcc--acttt
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    398254 541 +   484378 I

a score=-1587.000000
s ce10.chrX              2908188 8 + 17718866 CCCCATAT--
s cb4.chrX              17656274 3 - 21540570 -----TCT--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3558140 8 -  4147112 TGTAATAT--
i caePb3.Scfld02_0      I 1 I 534
s caeJap4.Scaffold17990   250028 8 +   357190 --tgatctaa
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    398254 541 +   484378 I
e caeRem4.Crem_Contig15   391436 649 -  1794024 I

a score=806.000000
s ce10.chrX              2908196 21 + 17718866 AATTTT-TCAAATCTGAAGGTT
s caeJap4.Scaffold17990   250036 22 +   357190 aattttagtgaatttgAAGATT
i caeJap4.Scaffold17990 C 0 I 506
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e cb4.chrX              17656277  0 - 21540570 C
e caeSp111.Scaffold582    398254 541 +   484378 I
e caeRem4.Crem_Contig15   391436 649 -  1794024 I

a score=-4233.000000
s ce10.chrX              2908217 452 + 17718866 CccaattggtaagttgttaggaaccatttttatggcgacaaaatgaccaaatatcaaaataaaacttttcacaacaaatttgaaatttttgaaatttttttattgacagtgaaatagtggcatttaccgagattttgccactttttgaaaAAAAATTAGAGCACTATAAGTGTTTTAATACAAATATTTTTATCATAAATAGACCATAAAATTAACT------AGGAAATTTTCTTGATCTACGACTTTCACAAAGTGGCAAAAACTAAGatttttttcaattttaaaaataccattttaaatttttttaaattttttgaaaa-------tatttttat-tatG--AAATTTGTAGTGTCATATGCATGTTTCAAAAATTGTTTTTCCCCACTA----GCGCTACACTACCT-----------------TTAATGCCAACTTGAAACACTTTTGCATTGTTCGCTTCATCTTCATTTCCGTTCAAGACC
s cb4.chrX              17656277 280 - 21540570 ------------GTTGTTA----CCAct-----------------------------------------------------------------actttttta--------------------------gaaattttgacacttttt-------------------------------------------ctgTCATG--TAGACCTAAAATATGATTTCgcttcgaaaactttttctcgCTGTGCTCTCCCCGACAT-----------------------ATGTAAACAATGtc----tagattttt--gagttgtttGCGACGAGCATCTATTCCCGTGTATGGTAAATCT-----------------TCTCACAAGTCGTTGCTGCTCCGCACAGCGCGCT-CACTGCTTGACCGTTTGGTGTTTTGTTCACGCTTGtatgaaactctatt---tttttttcgtcatct-------CGTTTTGGACC
i cb4.chrX              C 0 I 35
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e caeJap4.Scaffold17990   250058 506 +   357190 I
e caeSp111.Scaffold582    398254 541 +   484378 I
e caeRem4.Crem_Contig15   391436 649 -  1794024 I

a score=0.000000
s ce10.chrX              2908669 34 + 17718866 CAACCAAAAAAAAATTCCAATCCCATGTTTCTGG
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e caeJap4.Scaffold17990   250058 506 +   357190 I
e cb4.chrX              17656557 35 - 21540570 I
e caeSp111.Scaffold582    398254 541 +   484378 I
e caeRem4.Crem_Contig15   391436 649 -  1794024 I

a score=724.000000
s ce10.chrX              2908703 589 + 17718866  
s cb4.chrX              17656592 644 - 21540570  
i cb4.chrX              I 35 C 0
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e caeJap4.Scaffold17990   250058 506 +   357190 I
e caeSp111.Scaffold582    398254 541 +   484378 I
e caeRem4.Crem_Contig15   391436 649 -  1794024 I

a score=273.000000
s ce10.chrX              2909292 1 + 17718866 A
s cb4.chrX              17657236 1 - 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   392085 1 -  1794024 A
i caeRem4.Crem_Contig15 I 649 C 0
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e caeJap4.Scaffold17990   250058 506 +   357190 I
e caeSp111.Scaffold582    398254 541 +   484378 I

a score=95.000000
s ce10.chrX              2909293 3 + 17718866 CCA
s cb4.chrX              17657237 3 - 21540570 aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   392086 3 -  1794024 CGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    398795 3 +   484378 CCA
i caeSp111.Scaffold582  I 541 C 0
e caePb3.Scfld02_0       3558148 534 -  4147112 I
e caeJap4.Scaffold17990   250058 506 +   357190 I

a score=-767.000000
s ce10.chrX              2909296 21 + 17718866 AAACTGTACATGA--TTGTTTGG------
s cb4.chrX              17657240 13 - 21540570 aaattctagtttt----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   392089 29 -  1794024 AAACCGTACAtttttttGTACAGGAGAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    398798 27 +   484378 AAACCGTACATAT--tcggaagagaagaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3558682 27 -  4147112 AAACCGTACATAT--TTGGGCCGCCATCA
i caePb3.Scfld02_0      I 534 C 0
e caeJap4.Scaffold17990   250058 506 +   357190 I

a score=34325.000000
s ce10.chrX              2909317  96 + 17718866 AGAAC---AAATGTTTATTAAATTTGAT----TTG--CTTC-AATCGTACACGTGACTCACCTCTTCTTATTGTTTTAT----TTTTTGCGCC-----CATCCGCTTTCCC-ATCG
s cb4.chrX              17657253 108 - 21540570 caaCA---TTATGAACattaattttcatcaaattgcCCTTC-AATTGTACGTGTGACTCATCCACATCCGCATTCTCATACTCTTCCAttttcc----catcggcgttctttttcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   392118 102 -  1794024 CCaca---aaatgtttattaaaTTTGAT----TTG--TTTC-TATCGTATATATGACTCAtt----tctattgttttattttcttttttcctccccttcatccgcattctcttatt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    398825  99 +   484378 tgaaa---aaatgtttattaaATTTGAT----TCG--TTTTCAATTGTACGTATGACTCATC--TGCCTATtgttttattcgtttttcctctc-----catccgctttcgc-tttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3558709  99 -  4147112 CAAAAGCCAAATGTTTATTAAATTTGAT----TCG--TTTG-AATCGTATATGTGACTCATC--TCTCCattgttttat--atttcttttttc-----catccgCTTTCTC-AACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   250564  98 +   357190 aaaga---aaatgtttattaaATTCAAA----TCT--GTCC-GATCGTATACATGAGTCACC---ACGCATTGTTTTATTCTATATTTTCCCCC----CACCCAccgcctc-tttt
i caeJap4.Scaffold17990 I 506 C 0

a score=2627.000000
s ce10.chrX                  2909413 64 + 17718866 CTT-------CTC---------------CGCCCACTTTCGTTTC-TCTTCTTTTTTCAGTTTCGGC-----TCATTTTCCGCTCTTTAC----------ATC
s cb4.chrX                  17657361 69 - 21540570 tttcagtcacctc---------------cttctcttttttctcaacatttttttgccatttccaaa-----tacacattctcctttttt-------------
i cb4.chrX                  C 0 I 1
s caeRem4.Crem_Contig15       392220 67 -  1794024 ttt-------ctc---------------cgcctacttttcttccATGCTTTTATTTCAGTTCCTGC-----TCCTCCTATCTCTTGTTT--------CCATC
i caeRem4.Crem_Contig15     C 0 I 1
s caeSp111.Scaffold582        398924 56 +   484378 tcc-------ccc---------------cgcctc-ttttt-----tgtttttgtttcagttcCTGC-----TCCTTCTCCCTTCATTTC-------------
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3558808 61 -  4147112 TCt-------ctc---------------cgcctctttttt-----tgtttttatttcagttccTGC-----TCCTTCTTCCATCATTCC---------TATC
i caePb3.Scfld02_0          C 0 I 104
s caeJap4.Scaffold17990       250662 95 +   357190 ttt-------tttgtttttttgatacaacgccatgttttgttttctttttttgtgtgcTTCTCTCCGCCCATCCACCTCCCTCTCCTTCGTAATgttgcatt
i caeJap4.Scaffold17990     C 0 I 3
s caeAng1.scafRNAPATHr21092     8491 58 -    17729 CCT-------CAC---------------CGCCTcctttttttccacatttttttgtcaaattttca-----ttccgCTCTCCTTT-----------------
i caeAng1.scafRNAPATHr21092 N 0 C 0

a score=-27471.000000
s ce10.chrX                  2909477 39 + 17718866 TTATAGC--------------AAAACGG---------ATCTCAA------TTTCA------------------------------------ATTAAAATTGAAA------
s cb4.chrX                  17657431 31 - 21540570 tttcagt-------------------------------------------ttcttttcgA------------------------------TATTGccaattcaa------
i cb4.chrX                  I 1 I 17
s caeRem4.Crem_Contig15       392288 59 -  1794024 TTTCATCAGTTACCATTCACACAAATCA---------TTCTTTA------TTCCGTccgt------------------------------ttttctctctgaaa------
i caeRem4.Crem_Contig15     I 1 I 15
s caeSp111.Scaffold582        398980 71 +   484378 TTATAGT---TTTCTATCAAACAAACCGTtagatttcttcttcaattcccttttctcggt------------------------------ttttttgtttccaa------
i caeSp111.Scaffold582      C 0 I 13
s caeJap4.Scaffold17990       250760 93 +   357190 ttttatt-----ttattcctatccacaatttgattacagtttta------ttttgctcgTGGCGCTCTTCTATTAATTTGATGTTTCCCATACTCCCAATAAAA------
i caeJap4.Scaffold17990     I 3 I 4
s caeAng1.scafRNAPATHr21092     8549 39 -    17729 --------------------------------GCCGCATTTCAG------tttcatt---------------------------------tgtttcaaaaaaaatacaaa
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caePb3.Scfld02_0           3558869 104 -  4147112 I

a score=210133.000000
s ce10.chrX                  2909516 166 + 17718866 --AC-AATTTTCAGAT-----ATTACGAAGTTAAC---AAATGGGTGACCTGCAGTACCTGCAGGTACAGAGGGCGGCCGTTGCCGATCCTGCCACACTTGCCGCGTGGGCACAGCGGAAACTGTGCTGGGTACCAGATCAGAACGAAGGATTTCTCATTGGATCCATCAAGTGAGT
s cb4.chrX                  17657479 170 - 21540570 --GCAATTTTGCAGAT-----ATTTCGAAGTTAACCAACAATGGGTGACCTGCAGTATCTGCAGGTACAACGGGCTGCCGTTGCCGATCCTGCCACACTTGCCGCGTGGGCTCAACGAAAACTGTGTTGGGTGCCCGATCAGAACGAGGGATTCCTTTTTGGATCCATCAAGTTAGC
i cb4.chrX                  I 17 C 0
s caeRem4.Crem_Contig15       392362 166 -  1794024 --tc-cttttccagat-----aATACGAAGTTAAT---CAATGGGTGACCTGCAGTATCTGCAGGTACAGCGGGCCGCCGTAGCCGATCCTGCGACGTTGGCGGCATGGGCCCAGAAAAAGTTATGTTGGGTACCAGACCAAAACGAAGGGTTCCTCTTTGGATCGATTAAGTGAGT
i caeRem4.Crem_Contig15     I 15 C 0
s caeSp111.Scaffold582        399064 163 +   484378 --at----tttcagat-----attacGAAGTTAAT---CAATGGGTGACCTGCAGTACCTGCAGGTTCAACGGGCAGCCGTTGCTGATCCTGCCAAACTTGCCGCTTGGGCCCAGAGAAAACCGTGCTGGGTGCCGGACCCGAACGAAGGATTCCTGTTAGGATCTATTAAGTGAGT
i caeSp111.Scaffold582      I 13 C 0
s caePb3.Scfld02_0           3558973 167 -  4147112 --ttcctatttcagaT-----ATTACGAAGTTAAC---CAATGGGTGACCTGCAGTACCTGCAGGTTCAACGGGCAGCCGTTGCCGATCCTGCCAAACTTGCCGCTTGGGCCCAGAGAAAACCATGTTGGGTTCCAGATCCGAACGAAGGATTCCTTTTTGGATCAATCAAGTAAGT
i caePb3.Scfld02_0          I 104 C 0
s caeJap4.Scaffold17990       250857 167 +   357190 --ATAAATTTTCAGCT-----attccaaacttttc---aaaTGGGTGACCTGCAGTACCTGCAGGTACAACGGGCCGCAGTTGCCGATCCTGCCACACTTGCCGCTTGGGCACAGAGAAAACTGTGCTGGGTGCCGGACCAAAATGACGGATTCCTTTTGGGCTCAATCAAGTGAGT
i caeJap4.Scaffold17990     I 4 C 0
s caeAng1.scafRNAPATHr21092     8588 174 -    17729 ataaacatttgCAGCTTCTCGATAGCGATTCGATT---CGATGGGTGACCTGCAGTATCTGCAGGTTCAACGGGCGGCTGTAGCTGATCCGGCGACACTTGCCGCATGGGCTCAGAAGAAATTGTGTTGGGTACCAGATCAAAATGAGGGATTTTTGTTGGGATCCATCAAGTgagt
i caeAng1.scafRNAPATHr21092 C 0 I 1087

a score=-39123.000000
s ce10.chrX                  2909682  36 + 17718866 TT----GCGT------------------------------------------------------------------------------------------------GCTCTCAACTCATTCCGTAATCGGT-A----GTAA
s cb4.chrX                  17657649  33 - 21540570 AA---------------------------------------------------------------------------------------------------------TTTCGAATGT---TCTTCTCTAACAAAAACTAAT
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       392528  36 -  1794024 CAT---CATT------------------------------------------------------------------------------------------------GTTTTGAACA-----CGTGatcaac-aaaataaat
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        399227  35 +   484378 gca---aaat------------------------------------------------------------------------------------------------atttcaaatttc-atttccattcgt------TGAT
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3559140  39 -  4147112 TCATTCATTT------------------------------------------------------------------------------------------------GTTGGcaactga-tttttcatttat-a----tcat
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       251024 138 +   357190 CAT---ACTTAtttttttACGGcggtgcaaacgcgctccattcgcacaAAGTGTCAGACATTTTTCGTCCGAGCGCGTCGCGTTCGCATCACCGCGTAGTaatcaaatttcaaatttcttttcTTATCAGTcgcaaacaat
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092     8762 1087 -    17729 I

a score=365737.000000
s ce10.chrX                  2909718 418 + 17718866  
s cb4.chrX                  17657682 413 - 21540570  
i cb4.chrX                  C 0 I 23
s caeRem4.Crem_Contig15       392564 416 -  1794024  
i caeRem4.Crem_Contig15     C 0 I 21
s caeSp111.Scaffold582        399262 422 +   484378  
i caeSp111.Scaffold582      C 0 I 23
s caePb3.Scfld02_0           3559179 423 -  4147112  
i caePb3.Scfld02_0          C 0 I 24
s caeJap4.Scaffold17990       251162 478 +   357190  
i caeJap4.Scaffold17990     C 0 I 25
s caeAng1.scafRNAPATHr21092     9849 551 -    17729  
i caeAng1.scafRNAPATHr21092 I 1087 C 0

a score=0.000000
s ce10.chrX                  2910136 23 + 17718866 ACTTTCCAAACAAAGCGTTTGCA
e caeAng1.scafRNAPATHr21092    10400  0 -    17729 C
e caePb3.Scfld02_0           3559602 24 -  4147112 I
e caeJap4.Scaffold17990       251640 25 +   357190 I
e cb4.chrX                  17658095 23 - 21540570 I
e caeSp111.Scaffold582        399684 23 +   484378 I
e caeRem4.Crem_Contig15       392980 21 -  1794024 I

a score=177660.000000
s ce10.chrX                  2910159 179 + 17718866 AAAATCATATTCTTTTCAGAACGCGAAGATCAATCGATCCTGTGTACCGGAGAGTCTGGAGCAGGAAAAACTGAAAACACGAAAAAAGTTATTCAATATTTGGCTCACGTTGCTGGAGCCACTCGAAACAAGTCGCTAAATGCTGCTGCACAGCAAAATATTGTTCAAAAGGTTAGTTA-
s cb4.chrX                  17658118 175 - 21540570 -aaa---aacaaattccagAGCGAGAAGATCAATCGATCCTGTGTACCGGAGAGTCTGGTGCCGGTAAAACTGAGAACACCAAAAAAGTGATTCAGTACCTTGCACACGTCGCCGGAGCCACGAGAAACAAGGGCATGAGTGCAGCGGTTGCTCAAAATATTGTTCAGAAGGTGAGTCA-
i cb4.chrX                  I 23 C 0
s caeRem4.Crem_Contig15       393001 177 -  1794024 -AAA-CTAGTGGATTTCAGAGCGTGAAGACCAGTCTATTCTGTGTACAGGAGAATCAGGAGCCGGAAAGACAGAGAACACAAAGAAAGTTATCCAATATTTGGCTCACGTCGCTGGAGCAACCAGAAACAAGGGAATGAGTGCTGCAGTGGCTCAAACTATTGTCCAGAAAGTGAGTCa-
i caeRem4.Crem_Contig15     I 21 I 70
s caeSp111.Scaffold582        399707 163 +   484378 ----------------CAGAGCGTGAAGATCAGTCAATTTTGTGTACCGGAGAGTCCGGAGCaggaaaaacagagaacACCAAGAAGGTGATTCAATATCTTGCACACGTCGCCGGAGCTACAAGAAACAAGGGAATGAGCGCAGCAGCTGCTCAGTCAATTGTTCAGAAAGTGAGTCA-
i caeSp111.Scaffold582      I 23 I 13
s caePb3.Scfld02_0           3559626 171 -  4147112 --------CTCCTTTCCAGAAAGAGAAGATCAATCTATCCTATGTACCGGAGAATCTGGTGCaggaaaaacagagaacaCCAAAAAAGTGATTCAGTACCTTGCACATGTCGCTGGAGCTACCAGGAATAAGGGAATGAGCGCAGCAGTTGCTCAATCTATTGTCCAGAAAGTGAGTCA-
i caePb3.Scfld02_0          I 24 I 1
s caeJap4.Scaffold17990       251665 177 +   357190 --AAAATGTTGCATTGCAGAGCGAGAAGATCAGTCGATTCTGTGTACCGGAGAATCTGGTGcgggaaaaactgaaaacacgaaaaaagtgATTCAGTACTTGGCTCATGTCGCCGGAGCCACCAGAAACAAGTCGTTGAACGCTGCAGTTGCTCAAAATGTTGTGCAAAAGGTGGGTCG-
i caeJap4.Scaffold17990     I 25 I 39
s caeAng1.scafRNAPATHr21092    10400 154 -    17729 -----------------AGAGCGAGAAGATCAATCGATTTTATGTACCGGAGAATCGGGAGCTGGTAAAACTGAGAATaccaaaaaagttattcAATATTTGGCACATGTTGCGGGAGCAACTAGAAATAAAGGAC---------AAGCTCCACCAAATGGACCACAAAAGGTATGAAAA
i caeAng1.scafRNAPATHr21092 C 0 C 0

a score=-17317.000000
s ce10.chrX                  2910338 39 + 17718866 CTATAAATATTTGTTACA-------------------------------------TCTACTTTAAAAGGTATATGA--------
s cb4.chrX                  17658293 16 - 21540570 ------------------------------------------------------------TTGGAATGATAGGTGA--------
i cb4.chrX                  C 0 I 14
s caeSp111.Scaffold582        399883 35 +   484378 CGACAAAGAACAACGAc-----------------------------------------gattttaataaaaaatga--------
i caeSp111.Scaffold582      I 13 I 6
s caePb3.Scfld02_0           3559798 33 -  4147112 AAGCCAAGAATTCgttc-----------------------------------------aatttcaat--caattga--------
i caePb3.Scfld02_0          I 1 I 6
s caeJap4.Scaffold17990       251881 76 +   357190 ACGTTAAAAATTGCgatacggtgtttgcgtacttttgaaattttaaaaattcatcttcattttgaaaagttcgcaa--------
i caeJap4.Scaffold17990     I 39 I 22
s caeAng1.scafRNAPATHr21092    10554 43 -    17729 ---CCAGAAATTTttataga--------------------------------------attttgaaatataaaaaataatctgg
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caeRem4.Crem_Contig15       393178 70 -  1794024 I

a score=33460.000000
s ce10.chrX                  2910377 106 + 17718866 ------TGAAGaa------taataattat--tataat----------------------tgatat-atttaGC------CAGATGTCCGCAATCCGATCGTAAGTTT-------GATCTTGT---TATCTTGCTATTTTGTTGTGAATTGTTGTCGTGA
s cb4.chrX                  17658323  97 - 21540570 ------TGAGGA--------agttatttc--taaaaa------------------------ttat-ttttagc------cGGATACCCGAAACCCAATCGTAAGTTT-----TACATCATGTAGATC----------TTGTTGTGACTTGCTGTCGTGA
i cb4.chrX                  I 14 C 0
s caeRem4.Crem_Contig15       393248  98 -  1794024 ------TAAAAA-------Taggaatcat--caaaaaa-------------------cgttttat-tttTAGC------AGGATACTCGGAACCTGATCGTAAGTTT-------AATCATGT---TA----------TTGTTGTGACTTGTTGTCGTGA
i caeRem4.Crem_Contig15     I 70 C 0
s caeSp111.Scaffold582        399924  94 +   484378 ------tagtga--------aacga-------aaaacag----------------ataaaaaca--ttttagc------CGGATGCTCGAAACCCAATCGTAAGTTC-------AATCATGT---TA----------TTGTTGTGACTTGTTGTCGTGA
i caeSp111.Scaffold582      I 6 C 0
s caePb3.Scfld02_0           3559837 100 -  4147112 ------aacaga--------aacaatttt--taatacga----------------aaaatgatat-ttttagC------CGGATGCCCGAAACCCGATTGTAAGTTC-------AATCATGT---TA----------TTGTTGTGACTTGTTGTCGTGA
i caePb3.Scfld02_0          I 6 C 0
s caeJap4.Scaffold17990       251979 120 +   357190 ------------TCAACCGTATTAATTTTC-CAATGTAT----------------ATAATAAAATATTTTAGC------TGGATTCTCGAAACCCAATCGTAAGTTGACACAAAAattgtgtattta----tatactttgttgtgaattgttattgtga
i caeJap4.Scaffold17990     I 22 C 0
s caeAng1.scafRNAPATHr21092    10597 121 -    17729 AGATCCTAAATA-------AAATGATAGTTNNAAAATAATCTGGAGATCCTAAATAAAATGATAG-TTTTAGCTAGTAGTAGATCCGCGAAGTCCAATCGTAAGttt------------------------------ttgctgttaatttttattgtga
i caeAng1.scafRNAPATHr21092 C 0 I 442

a score=-26131.000000
s ce10.chrX                  2910483  81 + 17718866 CA-TTGTCGTGATAC------ACTTTTCTGTGACTATTTCAGTAACAAAAAATATT----------GTTCCGTA---------------ACAATTTATTT--------------ATTGATTTTT-CTT
s cb4.chrX                  17658420 101 - 21540570 CA-GTGTcgtgattc------tttttttt-tg--tat----------aattttgtGATG------AGTTTCTTGTCTCATTCCTTTCTAAAGTactggtcaataagatatacaaacggtatttt-tta
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       393346  50 -  1794024 CA-CTGTTGTGATTT------TACTTT-------CAT----------AACGCTCT-----------GTTTCTTG---------------ACGTTCTCgtc----------------------------
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        400018  75 +   484378 CA-TTGTcgtgatttcatttcttattttt-taacgAT----------AATCATATT----------GTCTCTTG---------------CTATTTTAAT----------------TCATCTTGTACAA
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3559937  58 -  4147112 CA-TTGTcgtgattt------ttattttt-taactaT----------GA----------------------Ttg---------------tgatcatcatc--------------atcatcttgt-ctt
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       252099  88 +   357190 aagttgttgtgattg------attttgtt-gaaaaatctaaaacaCCAATTATTATACATAAACCAACttgtct---------------gtttttttatt--------------attttctttt----
i caeJap4.Scaffold17990     C 0 I 195
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I

a score=-42517.000000
s ce10.chrX                  2910564 158 + 17718866 GTTCAGTACATCACCTTGTTCTAATATGTC--------------------AACAAAAT------CCAACAGAAAA--------------------------------------------------AAACTTGTCTAATCATATCTAATTATG------------TTAATT--GTTCTAATTGATttgaagaagcagtaacggtttttgtgtattttgaaggtatatacccaaaatgtg-------------ctcaa--------ctaaa
s cb4.chrX                  17658521 221 - 21540570 gttga------------ttttcggcattttctAGGAGTCTGGAAAtgagctgtcaagtttccaatcactttgaaaattacaatagGTATAAAATAGACTTCggttaaaaatgtttcattccgagagttttttttaagtt---tctagttttttttttgttgatatttgcCAAGTTCTAAATGA-------------CACccattttgacccatttt-------tgtaatgaaaacatt-------------taaaaacgTGTATTTTAG
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       393396  81 -  1794024 -----------------tttttattatttc---------------tgatGTATCAAAT------TCACCACACAAATCAT---------------------------------------------GTCTTTCTCA------------------------------TTACC--GTTCCAAA-------------------------------------------------GCTaatatg-------------tcaaa-----------aa
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        400093 108 +   484378 ATTCACAAAATGA--TGTCTTTACCG------------------------TACCAAAT------CTAAT----Atgtcaaaacaa----------------------------------------aaaactgtca-----------------------------cTAATC--ATGTCAAATGT----------------------------------------------GCCAATATAAAACATCACTCTCCcaag--------ctgaa
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3559995  79 -  4147112 attca-------------ttttatcatt----------------------tatcatgt------tcaa-----atttcacaac------------------------------------------aACGCTGTC------------------------------TTTACC--GTTCCAAAT-------------------------------------------------CTAATAtg-------------tcaaa--------ttgaa
i caePb3.Scfld02_0          C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I
e caeJap4.Scaffold17990       252187 195 +   357190 I

a score=-3412.000000
s ce10.chrX                  2910722 7 + 17718866 aaaagtc
s cb4.chrX                  17658742 4 - 21540570 AAA---C
i cb4.chrX                  C 0 I 70
s caeRem4.Crem_Contig15       393477 4 -  1794024 aaa---c
i caeRem4.Crem_Contig15     C 0 I 115
s caeSp111.Scaffold582        400201 3 +   484378 aaa----
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3560074 2 -  4147112 aa-----
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       252382 7 +   357190 agatgtc
i caeJap4.Scaffold17990     I 195 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I

a score=-46.000000
s ce10.chrX                  2910729 14 + 17718866 gtaata-------aGCCAAAA
s caeJap4.Scaffold17990       252389 21 +   357190 gtaaaatgggtctcgccacga
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I
e caePb3.Scfld02_0           3560076  0 -  4147112 C
e cb4.chrX                  17658746 70 - 21540570 I
e caeSp111.Scaffold582        400204  0 +   484378 C
e caeRem4.Crem_Contig15       393481 115 -  1794024 I

a score=-2370.000000
s ce10.chrX                  2910743 11 + 17718866 ---------------TTG------------AGTATTTT
s caeSp111.Scaffold582        400204  6 +   484378 --------------------------------tcattt
i caeSp111.Scaffold582      C 0 C 0
s caeJap4.Scaffold17990       252410 38 +   357190 tcggtgtatgcatacttgtaaacaatctacagtacttg
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I
e caePb3.Scfld02_0           3560076  0 -  4147112 C
e cb4.chrX                  17658746 70 - 21540570 I
e caeRem4.Crem_Contig15       393481 115 -  1794024 I

a score=-45938.000000
s ce10.chrX                  2910754 123 + 17718866 GGCGAATGTTATCCATTTTTTCGAAATTTTTAAGCTG-------TGGAAAAAACA-------TTTTTAAAAAT-----------TCGAGAACA----TTTTAAAGT----------------------------TTATAAGTTCAAAAATTTTCAAA----------------------------CCGTTTC-------------------------------------TCCTCCTTTAAGGAAA----
s cb4.chrX                  17658816 156 - 21540570 GGCAAGCTCTAgccttctg---aaaatggtcaaaatg-------agtgaaaatca--------actgaaaaat-----------------gca----tttttataCATCGTATTGAACAGTATTGTATTACTTGTTTCAAATTCACAA-----CACA--TCAATTACGTAAAGCTTC--------ATGTCTCAT-----------------------------------TATACCATTCTAATAT----
i cb4.chrX                  I 70 I 1
s caeSp111.Scaffold582        400210  62 +   484378 ggcTTTCATGACTCAT-------------TCA------------------------------------------------------------------------------------------------------TCTCCTAAGCAAAA-----AACA----------------------------ATGCTTCGT-----------------------------------TCCAAAGTCTAAAAAT----
i caeSp111.Scaffold582      C 0 I 4
s caePb3.Scfld02_0           3560076  63 -  4147112 --ctgtcaCTAATCAT------------GTCAAAC---------------------------------------------------------------------------------------------------GTgccaaatcaaaa-----caaa----------------------------atg-ttcac-----------------------------------tCCCCTAGCTAAAAAC----
i caePb3.Scfld02_0          C 0 I 4
s caeJap4.Scaffold17990       252448 236 +   357190 ggatactgtagattgt----ttacatttttcgacatgcgtgaattggaaaaatcatgttatttttttatgaatgaCCCCcaaagtataaaacaaaagttttaaaaaataaatttcgacaaaaaat---------gttcaaatccacaagtgtgcaaacaccgatcgtgccaagacccattttacgacatctcacgtactcgggaatacgtaatataaaTTTAACTATCATGTAATTTTCACAAACAAAG
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I
e caeRem4.Crem_Contig15       393481 115 -  1794024 I

a score=-97081.000000
s ce10.chrX                  2910877 186 + 17718866 TCAACA-AAAAAGA-TGCAGTTC-----------TTCCCCATT-----------------------------------------TGCTGCAAACAGATTATTATAAAAAATGCTTTTAAA-------------------ATCC-----AAACGG-----CTTTCTCCAAACAAATTATTCC----------------CAAAGAGCTTCATCC---TCGAATCAAAAAATGTTGTTTTATT------GTGCTCACAACCTGATCAA--------------------AGTCATGTTAATT-CATTTAGC--C----------------------ACCACTG
s cb4.chrX                  17658973 193 - 21540570 TCGAAT-CAAACGC-TTTGATTCAAACCCAAATGTTGTTAA------------------------------------------------CACTAATATTGTC-----AAATtcgctcaaaatctgaaaattgcaaaacaaacc--------------------caccaaaaaaaccctttg----------------caaaaa------------taaaaatacaaattggCTTT------------AATTACTCATTTGATCTATCTAAATTGTAACTGAGTTGTATAA---------GCTTTTATCCA----------------------GCCTCTG
i cb4.chrX                  I 1 I 61
s caeRem4.Crem_Contig15       393596 104 -  1794024 TCATCT-AAAATGC-TGTAGTCC-----------TTATT-----------------------------------------------------TCTTGTTGTC-----TATTAC--------------------------AACC----------------------------AAACCACTTG-----------------------------------------ACAAAATGTGATG------------TGCTATTCACGAAATCCA--------------------TATTT---------CCTTTCAT--A----------------------ACC----
i caeRem4.Crem_Contig15     I 115 I 2
s caeSp111.Scaffold582        400276  50 +   484378 ----------------GTAGTCC-----------TTTTC-----------------------------------------------------TCGTATTGTT-------------------------------------ATC----------------------------------------------------------------------------------------------------------------------ACCAA--------------------TATC----------CATTTTAC--A----------------------ACCAGTG
i caeSp111.Scaffold582      I 4 I 5
s caePb3.Scfld02_0           3560143 101 -  4147112 -----------------TGGCTT-----------TTATG-----------------------------------------------------ACTTATTCAT-------------------------------------ATCC--------------------CAAGCAAAACAAGGCTTC---------------------------------------ATCCAAGCTATAGTC--------------CTTCTCGT---ATCGT--------------------TATCACAACTTTTCCACTTGAC--A----------------------AGAAGTG
i caePb3.Scfld02_0          I 4 I 5
s caeJap4.Scaffold17990       252684 292 +   357190 CCAACACAAAATGCGTTTCGTCT-----------TTCTAATTTGTCAAAATCAATTTTGTAAAATCACTAATTATGTCGAAAAGTGCCAAAACCTGATTCTC--ACAAGCCTCTATCAACCCTCTCAATTCATAAACCTACCCAGCTCAAACAGAtgcttttttctgaaaaaaataaatcaaatccTACATATTTACCATCAAGCTTTATCCGAATTCAATTCCCGATAATGCTCGAATTTTGTCGTTGTCTTTCAC---GACCA--------------------GATAG---------CTTTCCAC--AGAAGTGATCTGCTGTGTGATTCACCGCTA
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I

a score=-8097.000000
s ce10.chrX                  2911063 20 + 17718866 CAAAAT-----------AGTTTTACACGTTT
s caeRem4.Crem_Contig15       393702  6 -  1794024 CAATAT-------------------------
i caeRem4.Crem_Contig15     I 2 C 0
s caeSp111.Scaffold582        400331 24 +   484378 CCGTACT-------CTTAGTTCATTTTATAT
i caeSp111.Scaffold582      I 5 C 0
s caePb3.Scfld02_0           3560249 31 -  4147112 TAATATTTAACAAACTCTGCTTAACCCGCAT
i caePb3.Scfld02_0          I 5 C 0
s caeJap4.Scaffold17990       252976 19 +   357190 ------------GAACTTATTGAAACAAAAT
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    10718 442 -    17729 I
e cb4.chrX                  17659166 61 - 21540570 I

a score=-615.000000
s ce10.chrX                  2911083 9 + 17718866 AATATCGAA
s caeSp111.Scaffold582        400355 9 +   484378 GATGATTCC
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3560280 9 -  4147112 AATATAACT
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       252995 9 +   357190 GTTAATAAT
i caeJap4.Scaffold17990     C 0 I 3
s caeAng1.scafRNAPATHr21092    11160 9 -    17729 aataattaa
i caeAng1.scafRNAPATHr21092 I 442 C 0
e cb4.chrX                  17659166 61 - 21540570 I
e caeRem4.Crem_Contig15       393708 0 -  1794024 C

a score=150481.000000
s ce10.chrX                  2911092 109 + 17718866 GTTTTCAGGGAGAATTGGAACATCAACTACTTCAAGCCAATCCAATCCTTGAAGCTTTTGGTAACTCGAAGACAGTGAAAAATGACAACTCTTCCAGATTCGTATGTGT
s cb4.chrX                  17659227 107 - 21540570 ATTTTCAGGGAGAGCTGGAAAATCAACTTCTTCAAGCGAATCCGATTCTCGAAGCTTTCGGTAACtcgaaaactgtgaaaaatgacaattctTCGAGATTCGTGAGT--
i cb4.chrX                  I 61 C 0
s caeRem4.Crem_Contig15       393708 106 -  1794024 ---TTCAGGGAGAATTAGAAAATCAGCTCCTTCAAGCCAATCCAATCCTCGAAGCATTCGGTAACTCGAagacagtgaaaaatgacaactCTTCTCGATTCGTAAGTTT
i caeRem4.Crem_Contig15     C 0 I 29
s caeSp111.Scaffold582        400364 109 +   484378 GTTTTCAGGGAGAATTGGAGAATCAACTTCTCCAGGCAAATCCTATCTTGGAAGCTTTCGGTAATTCcaaaactgtaaaaaatgACAACTCATCTCGATTTGTAAGTTT
i caeSp111.Scaffold582      C 0 I 37
s caePb3.Scfld02_0           3560289 107 -  4147112 GTTTTCAGGGAGAATTGGAAAACCAACTTCTTCAAGCTAACCCAATCCTTGAAGCTTTCGGTAACTCGAAGACCGTGAAAAATGACAACTCATCCagattcgtgagt--
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       253007 109 +   357190 ATTTTCAGGGTGAATTGGAGCATCAACTTCTTCAAGCCAATCCAATTCTTGAAGCTTTTGGTAACTCGAAAACTGTCAAGAATGACAACTCGTCTAGATTTGTATGTcc
i caeJap4.Scaffold17990     I 3 I 5
s caeAng1.scafRNAPATHr21092    11169 107 -    17729 aatttcagggcGAATTGGAACACCAACTTCTTCAAGCTAACCCAATTCTTGAAGCTTTCGGTAACTCgaaaactgtgaaaaatgacaattctTCACgtttcgtgagt--
i caeAng1.scafRNAPATHr21092 C 0 C 0

a score=0.000000
s ce10.chrX                  2911201 1 + 17718866 G
e caeAng1.scafRNAPATHr21092    11276 0 -    17729 C
e caePb3.Scfld02_0           3560396 0 -  4147112 C
e caeJap4.Scaffold17990       253116 5 +   357190 I
e cb4.chrX                  17659334 0 - 21540570 C
e caeSp111.Scaffold582        400473 37 +   484378 I
e caeRem4.Crem_Contig15       393814 29 -  1794024 I

a score=-8318.000000
s ce10.chrX                  2911202 33 + 17718866 ATATTTTTAA--TCTTGCCCCCCGTGCATATTTGG
s cb4.chrX                  17659334 26 - 21540570 ---TTCTCA----CCTACCCCCC--GCCTTCTCAT
i cb4.chrX                  C 0 I 2
s caePb3.Scfld02_0           3560396 15 -  4147112 -tttttttg-------------------ttttcat
i caePb3.Scfld02_0          C 0 I 6
s caeJap4.Scaffold17990       253121 22 +   357190 atattttttg--tttga-----------tttttag
i caeJap4.Scaffold17990     I 5 I 11
s caeAng1.scafRNAPATHr21092    11276 23 -    17729 ---tttttgaactcttg--------aaattttaa-
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caeSp111.Scaffold582        400473 37 +   484378 I
e caeRem4.Crem_Contig15       393814 29 -  1794024 I

a score=-1085.000000
s ce10.chrX                  2911235  6 + 17718866 TTTTTT-------
s cb4.chrX                  17659362  4 - 21540570 --TTCT-------
i cb4.chrX                  I 2 I 1
s caeRem4.Crem_Contig15       393843  4 -  1794024 --tttt-------
i caeRem4.Crem_Contig15     I 29 I 1
s caePb3.Scfld02_0           3560417  5 -  4147112 -ttttc-------
i caePb3.Scfld02_0          I 6 I 9
s caeJap4.Scaffold17990       253154  6 +   357190 ttttct-------
i caeJap4.Scaffold17990     I 11 C 0
s caeAng1.scafRNAPATHr21092    11299 13 -    17729 aatttcaaaaaat
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caeSp111.Scaffold582        400473 37 +   484378 I

a score=250997.000000
s ce10.chrX                  2911241 179 + 17718866 TTTT-CAGGGTAAATTTATCCGTATCAATTTCGACATGAGCGGCTACATTAGTGGTGCGAACATTGAATTTTATCTGCTGGAAAAATCGAGAGTGCTTCGTCAAGCTCAAGACGAAAGAAGTTTCCACATTTTCTATCAGATACTCAGAGGATGCAGCGCCAAAGAAAAAAGTAGGTTG------A
s cb4.chrX                  17659367 179 - 21540570 TTTC-CAGGGAAAATTCATTCGCATCAATTTCGATATGAGCGGATACATCAGTGGAGCCAATATCGAATTCTATTTGCTCGAAAAATCCAGAGTTCTCCGTCAATCGCCAGACGAACGCAGTTTCCACATCTTCTACCAGATTCTCAGAGGATGCAGCGCCAAAGAGAAAAGTAGGTTG------A
i cb4.chrX                  I 1 C 0
s caeRem4.Crem_Contig15       393848 180 -  1794024 ttttgtaggGAAAGTTCATCCGCATTAACTTCGACATGAGCGGATACATCAGTGGAGCCAACATTGAGTTCTACTTGCTCGAAAAGTCCAGAGTGCTTCGTCAATCACCAGATGAACGCAGTTTCCACATCTTCTATCAGATTCTCAGAGGATGCAGTGCCCAAGAGAAAAGTGGGTTG------A
i caeRem4.Crem_Contig15     I 1 C 0
s caeSp111.Scaffold582        400510 179 +   484378 tttt-caggGAAAATTTATCCGCATCAATTTTGATATGAGTGGTTACATCAGTGGCGCCAACATTGAATTCTACTTGCTTGAAAAGTCAAGAGTTCTCCGCCAATCGATTGATGAACGCAGTTTCCACATTTTCTATCAGATTCTCAGAGGATGCAGcgccaaagaaaaaagtaggtTG------A
i caeSp111.Scaffold582      I 37 C 0
s caePb3.Scfld02_0           3560431 179 -  4147112 gttA-CAGGGTAAATTCATCCGTATCAACTTTGACATGAGTGGATATATTAGTGGAGCGAACATTGAATTCTACTTGCTTGAGAAGTCAAGAGTACTCCGTCAATCACCCGATGAACGCAGTTTTCACATCTTCTATCAGATTCTCAGAGGATGCAGCGCTAAAGAAAAAAGTAGGTTG------A
i caePb3.Scfld02_0          I 9 C 0
s caeJap4.Scaffold17990       253160 185 +   357190 cttt-caggGAAAATTCATCCGAATCAACTTTGACATGAGCGGATACATTAGTGGAGCTAATATTGAGTTCTACCTGCTCGAAAAGTCTAGAGTCCTTCGACAAGCACACGACGAACGAAGTTTTCACATCTTCTATCAGATTCTCAGAGGATGCAGCGCCAAAGAGAaaagtgggttttttttca
i caeJap4.Scaffold17990     C 0 C 0
s caeAng1.scafRNAPATHr21092    11312 179 -    17729 attt-cagggTAAATTCATCCGAATCAATTTCGATATGTCTGGTTATATCAGTGGAGCAAACATTGAATTCTATCTCCTCGAAAAATCTCGTGTACTTCGACAAGCTTTTGATGAGCGAAgtttccatattttctatCAGATTTTGAGAGGATGCAGTGCACAAGAGAAAAGTAATTTG------a
i caeAng1.scafRNAPATHr21092 C 0 I 20

a score=-34162.000000
s ce10.chrX                  2911420 349 + 17718866 GTCATAAAATCCAACATAAGAATTGGATTTATAACAAACCGAACGCATTTGTTTTTATTAGCCTGGTGAATCATGCGTGATTCATCATTTGACAAAAATGACGTTGAAAATTTTTAAGTAAAACCGTTAGGCCTTTTAAAAATTGAAACAGGAGTAACCCAAGTGGAAAAATGGTTATAAACCACTTATAAGTGTAACCAAATATCAT--AACAAA--------ACTTTTCAAAATCAATGTTGAAAAAATTTAATTGACGGTCAAAAAAGTGCTGTTATTGAGTTTGTGCTACTTTTTCAAAAAACTATAGCACTACCGCA-TTTTTGAATCCCTACAGTGTTTAAATATCAACA----------TTTT--
s cb4.chrX                  17659546 118 - 21540570 GTCATAAAACTGAA-----------------TTATTTGTTG------------TTGATTTGCGCGGGC----------------------------------------------------------------------CTTGGCGGCCAAGGa----------------------------------------------------tattcaacaaaaaagacGGCTTTCA--------ATGGTAGA---------------------------------------------------------------------CATTGCC-TTTTT---TG--------GTTggtgattcat------------tttt--
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       394028 123 -  1794024 GTCATAAAATCGAACAT--------------CAACAAGTTG------------TTCATTCGCGCGGGA-------------------------------------------------------------------TAGTCAAACGGAATAGGA----------------------------------------------------TAT--AACAAA--------CGTTTT--------ATGTTTAA---------------------------------------------------------------------TAGCGTC-TTTGTGAATC--------ATTTCTGATTCATCC------Ttcgtttt--
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        400689 113 +   484378 GTCATAAAAT-GAA-----------------CATCAAGTTG------------TCCATTTGCGCGGGG-------------------------------------------------------------------------ATGAGAATATGA----------------------------------------------------TAT--AACAAA--------CATTTC--------ATGTTTAA---------------------------------------------------------------------TAGCGTC-TTTGTGAATC--------ATTTCTgattcatct------tcattttt--
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3560610 123 -  4147112 GTCATAAAATAGAA-----------------CATCAAGTTG------------TTCATTCGCGCGGTG-------------------------------------------------------------------------GATGGAATTGGA----------------------------------------------------TAT--AACAAA--------CATTTT--------ATGTTTAA---------------------------------------------------------------------TAGCGTCTTTTGTGAATCACTGCC-TATTTCTGATTCATCT-----ATTCTTTTT--
i caePb3.Scfld02_0          C 0 C 0
s caeJap4.Scaffold17990       253345 154 +   357190 gtcgtAAAATCCCATGTATTATATACA----TCTCATGACT------------GCCATTTCTATGTTT----------------------------------------------TTAACGATTGCCTAAATACCTTTGTGAATCAACGGATGA----------------------------------------------------TGG--AATGAA------------TC--------ACGTGTGA---------------------------------------------------------------------T----TA-ATTTTGGCTA--------GACactaaaacaacaaaaatatcaatttttt
i caeJap4.Scaffold17990     C 0 C 0
e caeAng1.scafRNAPATHr21092    11491  20 -    17729 I

a score=-22169.000000
s ce10.chrX                  2911769 92 + 17718866 AAACA----TT-----AATTGATCATAACATTTGAAAGCCCAAAAGAGTGACAAAAACTGAGTTTTTTTCATGTATCAAAAAATTATATAAAATTCCACAT
s cb4.chrX                  17659664 65 - 21540570 ttgtga---tt-----caaCTATAAATAC----AAAACCCCGAAAAAAGTAGGAG----GACTTT---------------Gaattataagaaaaaa-----
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       394151 78 -  1794024 ttgctt---ttcttcgCAGCGATAGCTTC-CGTAAAAGggtttgaatggaaaaaa----cattttat----------aggGAATTGtgaacaaatt-----
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        400802 54 +   484378 ggaCAC---TT-----AAATGTTATAGAC-----------TGCAAGAGAAAGACG----GATCTT---------------GA----TTTAGAATAT-----
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3560733 61 -  4147112 ATATATACGTG-----GGATGATGGAAAC-----------CAAAATGGGGATACAAgatgataaa---------------aa----caaaaaatgt-----
i caePb3.Scfld02_0          C 0 C 0
e caeAng1.scafRNAPATHr21092    11491 20 -    17729 I
e caeJap4.Scaffold17990       253499  0 +   357190 C

a score=-1825.000000
s ce10.chrX                  2911861 13 + 17718866 TTAACTAATAATT------
s cb4.chrX                  17659729  5 - 21540570 -------atg-tt------
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       394229  6 -  1794024 -------ttgatt------
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        400856  6 +   484378 -------ATAATT------
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3560794  6 -  4147112 -------attatt------
i caePb3.Scfld02_0          C 0 C 0
s caeAng1.scafRNAPATHr21092    11511 12 -    17729 -------ttgattaaattt
i caeAng1.scafRNAPATHr21092 I 20 C 0
e caeJap4.Scaffold17990       253499  0 +   357190 C

a score=2594048.000000
s ce10.chrX                  2911874 2102 + 17718866  
s cb4.chrX                  17659734 2056 - 21540570  
i cb4.chrX                  C 0 I 34
s caeRem4.Crem_Contig15       394235 2056 -  1794024  
i caeRem4.Crem_Contig15     C 0 I 41
s caeSp111.Scaffold582        400862 2053 +   484378  
i caeSp111.Scaffold582      C 0 I 36
s caePb3.Scfld02_0           3560800 2124 -  4147112  
i caePb3.Scfld02_0          C 0 I 35
s caeJap4.Scaffold17990       253499 2042 +   357190  
i caeJap4.Scaffold17990     C 0 I 43
s caeAng1.scafRNAPATHr21092    11523 2195 -    17729  
i caeAng1.scafRNAPATHr21092 C 0 C 0

a score=0.000000
s ce10.chrX                  2913976 27 + 17718866 TGTTAATAATTTCTAGCGGACTGTGAA
e caeAng1.scafRNAPATHr21092    13718  0 -    17729 C
e caePb3.Scfld02_0           3562924 35 -  4147112 I
e caeJap4.Scaffold17990       255541 43 +   357190 I
e cb4.chrX                  17661790 34 - 21540570 I
e caeSp111.Scaffold582        402915 36 +   484378 I
e caeRem4.Crem_Contig15       396291 41 -  1794024 I

a score=2864715.000000
s ce10.chrX                  2914003 2613 + 17718866  
s cb4.chrX                  17661824 2571 - 21540570  
i cb4.chrX                  I 34 C 0
s caeRem4.Crem_Contig15       396332 2595 -  1794024  
i caeRem4.Crem_Contig15     I 41 C 0
s caeSp111.Scaffold582        402951 2754 +   484378  
i caeSp111.Scaffold582      I 36 C 0
s caePb3.Scfld02_0           3562959 2580 -  4147112  
i caePb3.Scfld02_0          I 35 C 0
s caeJap4.Scaffold17990       255584 2878 +   357190  
i caeJap4.Scaffold17990     I 43 C 0
s caeAng1.scafRNAPATHr21092    13718 2612 -    17729  
i caeAng1.scafRNAPATHr21092 C 0 I 206

a score=586398.000000
s ce10.chrX                  2916616 452 + 17718866 AGGGTGGCGGTATCAGCTCCGAAGAGAAGCGTCGCCTCGAAGCAAAAATTGCTCAACTCGAAGAAGAGCTCGAGGAGGAGCAGAGCAACTGCGAACTTGCCATCGACAAACAAAGAAAGGCCCAGGTGCAGCTTGAGCAAATCACCACCGATCTGTCAATGGAGCGAACTCTCAATCAGAAGACAGAAGCTGAAAAGCAAAGTCTTGAGAGAAGCAACAGAGACTATAAGGCGAAGATTACAGAGCTTGAATCTGGTGCTCAGTCTAGAGCTCGAGCTCAGATGGCTGCTCTTGAGGCCAAGGTTCAATATCTTGAGGATCAATTGAATGTTGAGGGACAAGAGAAGACTGCTGCCAACAGAGCTGCTAGACGACTCGAGAAGAGATTGAACGACACGACACAACAATTTGAAGATGAGAAGAGGGCTAACGAGCAAGCTAAAGAATTGGTA-
s cb4.chrX                  17664395 452 - 21540570 AGGGAGGTGGTATCAGCTCCGAAGAGAAGCGACGTCTTGAAGCCAAGATTTCCCAACTCGAAGAGGAACTTGAAGAGGAGCAGAGCAACTGTGAACTGGCTATCGATAAGCAAAGAAAGGCCCAAGTCCAGCTAGAACAAGTCACCACCGATCTATCCATGGAACGAACGCTCAACCAGAAAACAGATGCCGAGAAGCAAAGTCTGGAACGAACATGCAGAGACTACAAGGCCAAGATCACCGAGTTGGAGAGTGGTGCTCAATCCAGAGCGCGCGCTCAAATGGCTGCTCTTGAAGCCAAAATTCAATATCTGGAGGATCAGCTGAATGCTGAAGGACAAGAGAAGACTGCTGCCAATAGAGCTGCTAGACGACTCGAGAAGCGGTTGAATGATATTACACAGCAATTCGAAGATGAGAAGAGAGCCAATGAACAAGCTAAGGAATTGGTa-
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       398927 452 -  1794024 AGGGAGGAGGCATCAGTTCTGAAGAGAAGCGACGTCTTGAAGCCAAGATTGCTCAGCTCGAAGAAGAACTTGAGGAGGAGCAGAGTAACTGTGAACTTGCCATCGACAAACAACGCAAGGCTCAAGTACAATTGGAACAATTCACAACTGAACTGTCTATCGAGCGAACGGTCAACCAAAAGACTGAAGCTGAAAAGCAAGCTTTGGAGCGAACATGTAGAGACTACAAGGCAAAGATCACTGAACTCGAGTCTGGTGCTCAATCCAGAGCTCGTGCTCAGATGGCTGCTCTTGAGgcaaaaattcagtatttGGAGGATCAATTGAGCGCTGAAGGACAAGAGAAAACAACTTCGAACAGAGCTGCCAGACGATTGGAGAAGAAGCTGAATGATATGACTCAACAATTCGAAGACGAGAAGAGAGCCAATGAACAAGCTAAAGAATTGGTG-
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        405705 452 +   484378 GAGGAGGAGGTATCAGTTCCGAAGAGAAGAGACGTCTCGAAGCCAAGATTGCTCAGCTCGAGGAAGAACTTGAGGAGGAACAGACAAACAGCGAAATTGTTATTGACAAACAGAGAAAGTCGCAAGTCCAACTTGAACAAATGACGACTGACCTTTCAATGGAAAGAACTCTCAACCAGAAAGTTGAAGCTGAGAAGCAAAGTCTCGAGAGAACATGCAGAGACTACAAGGCCAAAATCACAGAACTCGAATCTGGAGCTCAATCGAGAGCCCGTGCTCAGATGGCTGCTCTCGAAGCAAAGATTCAATACCTCGAGGATCAATTGAATGCTGAAGGACAAGAGAAGACTGCTGCTAACCGTGCTGCAAGAAGACTTGAGAAGAGATTGAATGATATCACTCAACAgtttgaagatgaaaagagatcTAATGAACAAGCCAAGGAACTGGTA-
i caeSp111.Scaffold582      C 0 C 0
s caePb3.Scfld02_0           3565539 452 -  4147112 AAGGAGGAGGTATCAGCTCagaagagaagagacgtcttgaagccaagatttcgcaactcgaagaagaacttgaagaagaacaaagcAACTGTGAACTTGCCATCGACAAGCAACGAAAGGCTCAAGTTCAACTCGAGCAAGTCACAACTGACCTTTCTATGGAACGAACTCTCAACCAGAAAACAGAAGCTGAGAAGCAGAGTCTTGAACGAACATGCAGAGACTACAAAGCAAAGATTACCGAACTCGAATCTGGTGCTCAATCAAGAGCTCGTGCTCAGATGGCTGCTTTGGAAGCAAAGATTCAATATTTGGAGGATCAGTTGAATGCTGAAGGACAAGAAAAGACCGCTGCCAACAGAGCTGCCAGAAGACTAGAGAAGAGATTGAATGACATCACTCAACAATTCGAGGATGAGAAGAGAGCCAACGAACAAGCTAAGGAATTGGTA-
i caePb3.Scfld02_0          C 0 I 20
s caeJap4.Scaffold17990       258462 452 +   357190 AAGGAGGCGGTATCAGCACTGAGGAGAAACGACGCCTCGAAGCCAAAATTGGTCAACTCGAAGAAGAGCTTGAAGAGGAACAAAACAACTGTGAAGTTGCTATTGACAAGCAACGTAAAGCTCAAGTTCAACTTGAACAGGTCACCACTGAGCTCTCGATGGAGAGAACTTTGAACCAAAAGACTGATGCCGAAAAGCAAAGTCTGGAGAGAACGTGCAGAGAATTCAAGGCCAAGATCACGGAACTCGAGTCGGGAGCTCAATCACGGTCACGCGCTCAGATGGCTGCTCTGGAGGCTAAGATTCAATATTTGGAGGACCAACTGAGCACTGAGGGACAAGACAAGACTGCTGCCAACAGGGCTGCTCGGCGACTTGAAAAGAGATTGAACGATATCACGCAACAATTGGAAGATGAAAAACGAGCCAATGAACAGGCTAAGGAACTGGTA-
i caeJap4.Scaffold17990     C 0 C 0
s caeAng1.scafRNAPATHr21092    16536 453 -    17729 agggAGGTGGTGTCAGTTCTGAAGAGAAACGTAGACTTGAAGCCAAGATTGCTCAACttgaagaagaattggaagaagaGCAAAGTAATTGTGAAGTTGCGATTGATAAACAACGCAAAGCTCAACTTCAACTCGAACAAATCACCACTGAATTGTCAGCTGAACGTAATCTCAACCAGAAAACTGATGCTGAGAAACAAGCGTTAGAAAGAGCTTGCCGTGATATGAAAGCCAAGATCACTGAACTCGAATCTGGAGCTCAATCTCGTTCCCGCGCTCAAATGTCGGCTTTGGAAGCCAAGATTCAATATTTGGAAGATCAATTGAATACGGAGAATCAAGATCGAACTGCTGCTAATAGAGCTGCAAGAAGATTGGAGAAACGTTTGAATGATTTGACACAACAATTGGAGGATGAAAAACGAAATGGAGAACAAAGCAAAGAATTGGTAA
i caeAng1.scafRNAPATHr21092 I 206 C 0

a score=991.000000
s ce10.chrX                  2917068 5 + 17718866 Ggttt
s caeJap4.Scaffold17990       258914 5 +   357190 TGTTT
i caeJap4.Scaffold17990     C 0 I 8
s caeAng1.scafRNAPATHr21092    16989 5 -    17729 GGTTT
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caePb3.Scfld02_0           3565991 20 -  4147112 I
e cb4.chrX                  17664847 0 - 21540570 C
e caeSp111.Scaffold582        406157 0 +   484378 C
e caeRem4.Crem_Contig15       399379 0 -  1794024 C

a score=-9495.000000
s ce10.chrX                  2917073 23 + 17718866 aagaaagt-------tgtagaaagttttag--
s cb4.chrX                  17664847  6 - 21540570 ----------------------agtctt----
i cb4.chrX                  C 0 C 0
s caeRem4.Crem_Contig15       399379  6 -  1794024 ----------------------AGTTTC----
i caeRem4.Crem_Contig15     C 0 C 0
s caeSp111.Scaffold582        406157 15 +   484378 -AGAC------------TAATgactttt----
i caeSp111.Scaffold582      C 0 C 0
s caeAng1.scafRNAPATHr21092    16994 23 -    17729 -------TTTCGAACTGCAAAGGATTCC--CA
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caePb3.Scfld02_0           3565991 20 -  4147112 I
e caeJap4.Scaffold17990       258919  8 +   357190 I

a score=-6128.000000
s ce10.chrX                  2917096 17 + 17718866 -aaagttttagaaaATAA
s cb4.chrX                  17664853  7 - 21540570 -----------taaaaaa
i cb4.chrX                  C 0 I 2
s caeRem4.Crem_Contig15       399385  7 -  1794024 -----------TATATAA
i caeRem4.Crem_Contig15     C 0 I 9
s caeSp111.Scaffold582        406172 14 +   484378 ----ttattgatatACAA
i caeSp111.Scaffold582      C 0 I 3
s caeJap4.Scaffold17990       258927 12 +   357190 ------aaaaatatataa
i caeJap4.Scaffold17990     I 8 I 5
s caeAng1.scafRNAPATHr21092    17017 17 -    17729 GCTGTCTTTGATATTCG-
i caeAng1.scafRNAPATHr21092 C 0 C 0
e caePb3.Scfld02_0           3565991 20 -  4147112 I

a score=269192.000000
s ce10.chrX                  2917113 334 + 17718866 AGAAATATTGTTCATTTTCATT--------TTTTCAGCTGGAGAAATCGAACCTCAAAAACAGAAATCTCCGTCGCCAATTGGATGAAGCTGAAGACGAGATGTCACGAGAACGCACAAAGCATCGTAATGTGCAGCGTGAAGCCGACGATCTTCTCGATGCTAACGAGCAACTGACTCGAGAACTTATGAATCTTCGGTA-G-TTCATCCAATATTTTCA-------------CACGTGAATTAT--TTTTT--TGCAGAGGAAAC---AATAGACGGCGCGCTG---ATATGCGTCTTCGTAGAGGCTTCGATGTTCCCGGATCAAGTGATAATCTTGCTCGTGAAGAGGAAAACGAATCTAATG
s cb4.chrX                  17664862 336 - 21540570 ------aatctgaaaccTAACA----AATAATTTCAGCTCGAGAAGTCCAACCTCAAGAACCGAAACCTTCGCCGGCAACTCGACGAGACCGAAGATGAGATTTCTCGCGAACGAACGAAGCATCGCAATGTTCAACGAGAGGCTGATGACCTTCTAGATGCCAATGAACAACTCACACGGGAATTGATGAATCTGAGGTATA------CTAGAATTCCTT---TTCCAGTGCGaataccattttt--ttttt----cagaggaaaC---AACCGTCGACGAGCTG---ATATGCGCCTTCGACGAGGATTCGATGTGCCCGGCTCAAACGACAACCTGGCTCGTGAAGACGAGAACGAATCAAATG
i cb4.chrX                  I 2 C 0
s caeRem4.Crem_Contig15       399401 341 -  1794024 TGAAATCAttttaattctgat---------ttttcagctagAGAAGTCCAACCTAAAGAACAGAAACCTCCGCCGCCAACTCGATGAAACGGAAGATGAAATCTCACGTGAACGAACGAAACATCGTAATGTTCAACGTGAAGCTGATGATCTTCTTGATGCCAATGAACAACTTACCCGTGAACTTATGAACCTCAGGTA-A------CAAACCTCCCATGAATGTAGGTCATAACAAAGTTTATGATATTT----CAGAGGAAAC---AACAGAAGGCGTGCTG---ATATGCGCCTTCGTCGAGGCTTCGATGTGCCCGGATCAAGTGATAATCTTGCACGCGAAGACGAAAATGAATCCAATG
i caeRem4.Crem_Contig15     I 9 C 0
s caeSp111.Scaffold582        406189 320 +   484378 --------------------------AAAACTTACAGCTAGAGAAGTCGAACATCAAGAACAGAAACCTCCGTCGTCAATTGGATGAGAACGAAGATGAGCTGACTCGTGAAAGAACCAAACATCGTAATATTCAACGTGAGGCTGATGATCTTCTAGACGCCAACGAACAGCTTACTCGTGAGCTTATGAACTTACGGTA-AGTCTATCCAAAGTATAT------------ACCGTAACAATTCA--CAATTTCTGCAGAGGAAAC---AATAGAAGACGTGCTG---ATCTTCGTCTTCGTAGAGGATTCGATGTGCCAGGATCGAGTGATAACCTTGCACGcgaagatgaaaatgaatccaATG
i caeSp111.Scaffold582      I 3 C 0
s caePb3.Scfld02_0           3566011 336 -  4147112 ----------CGAAATCTCATTTATCAACGTTTTTAGCTCGAGAAGTCCAACCTCAAAAACAGAAACCTTCGTCGCCAATTGGACGAGACTGAAGATGAAATCTCTCGTGAAAGGACAAAACATCGTAATGTTCAACGTGAGGCTGATGATCTTCTTGATGCCAATGAACAACTTACCCGTGAATTGATGAACCTCAGGTA-A--TGAACCAACACACTTT------CAAGCATCACAAAAACTCA--TATTT----CAGAGGAAAT---AACAGACGGCGTGCTG---ATATGCGTCTTCGCAGAGGATTTGATGTACCCGGATCAAGTGATAACCTTGCACGAGAAGACGAAAATGAATCCAATg
i caePb3.Scfld02_0          I 20 C 0
s caeJap4.Scaffold17990       258944 347 +   357190 ----------AGAAATATACTT----GAtttttttAGCTGGAGAAGTCCAATATCAAGCAGAGAAATGTCCGACGCCAAGTTGATGAGCTTGAAGATGAACTTTCACGTGAGAGGACAAAACACAGAACTCTTCAACGTGAAACTGACGACCTCTTGGATGCTAATGAGCAACTTACTCGTGAGCTCATGAACCTGAGGTA-A--cgatttattaatttttatgtgaaatttttaattaatttcta--ttttt-ttgcagagGAAACGCTAGCCGAAGACGTGCCGAAAATATGCGCCTTCGACGAGGATTTGAAATTCCAGGATCCAGTGATAACCTTGCTCGTGAAGACGAAAATGAATCCAATG
i caeJap4.Scaffold17990     I 5 C 0
s caeAng1.scafRNAPATHr21092    17034 296 -    17729 ---------ataaattttaaataaaaataattttcagctcgagaAATCCAACATCAAACAAAGAAATATTCGCCGTCAAATGGATGAACTTGAAGAAGAATTATCACGTGAACGCACCAAAGTTCGAAACCTCCAAAGAGAAGCTGACGATCTTCAAGACGCCAATGATCAACTCAGCAGAGAG------------------A--------------------------------------TTTCA--AATCT----TCGCGGAAACGCGAATCGTCGTCGCGCCGAAAACTTGCGACTACGGAAAGCGTTTGAAATTCCTGGATCAAGCGATAATCTTGCCCGAGAAGATGAGAATGAATCAAATG
i caeAng1.scafRNAPATHr21092 C 0 N 0

a score=938.000000
s ce10.chrX              2917447 15 + 17718866 GTGAGGCATT----TTTGA
s cb4.chrX              17665198 19 - 21540570 GTAGAATATTGATATTTGA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   399742 19 -  1794024 GTAGATCTATTATATATGA
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    406509 19 +   484378 GTAAAATATTAATATATGG
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3566347 19 -  4147112 gtaaaatattatttttcga
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   259291  9 +   357190 gtaatttaa----------
i caeJap4.Scaffold17990 C 0 C 0

a score=-4082.000000
s ce10.chrX              2917462 18 + 17718866 AAATATT-CTTTCTATTAT-
s caeRem4.Crem_Contig15   399764 17 -  1794024 AAACTTG--CATCTATAAT-
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    406529 16 +   484378 TAATATG--CATCCGAtt--
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3566367 19 -  4147112 TAATGTAATCATTCATTAT-
i caePb3.Scfld02_0      I 1 I 10
s caeJap4.Scaffold17990   259300 14 +   357190 ----ata--tttttaatttt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17665217 33 - 21540570 I

a score=-862.000000
s ce10.chrX              2917480 14 + 17718866 AAATGTAAATATAA
s caeRem4.Crem_Contig15   399781  8 -  1794024 ------aatcattt
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    406545  5 +   484378 ---------tatta
i caeSp111.Scaffold582  C 0 I 4
s caeJap4.Scaffold17990   259314 14 +   357190 aatttaaaatttaa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3566386 10 -  4147112 I
e cb4.chrX              17665217 33 - 21540570 I

a score=146002.000000
s ce10.chrX              2917494 525 + 17718866  
s cb4.chrX              17665250 591 - 21540570  
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig15   399793 541 -  1794024  
i caeRem4.Crem_Contig15 I 4 C 0
s caeSp111.Scaffold582    406554 549 +   484378  
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3566396 516 -  4147112  
i caePb3.Scfld02_0      I 10 I 75
s caeJap4.Scaffold17990   259328 547 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=2641.000000
s ce10.chrX              2918019 4 + 17718866 TAAA
s cb4.chrX              17665841 3 - 21540570 -aaa
i cb4.chrX              C 0 I 2313
s caeRem4.Crem_Contig15   400334 3 -  1794024 -AAA
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    407103 3 +   484378 -aaa
i caeSp111.Scaffold582  C 0 I 55
s caeJap4.Scaffold17990   259875 4 +   357190 TAAa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3566912 75 -  4147112 I

a score=-795.000000
s ce10.chrX              2918023 4 + 17718866 TTTA-
s caeRem4.Crem_Contig15   400339 4 -  1794024 TCCA-
i caeRem4.Crem_Contig15 I 2 I 88
s caeJap4.Scaffold17990   259879 4 +   357190 -ataa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3566912 75 -  4147112 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I

a score=500.000000
s ce10.chrX              2918027 10 + 17718866 TTGGATTATT
s caeJap4.Scaffold17990   259883 10 +   357190 ttggtttttt
i caeJap4.Scaffold17990 C 0 I 3261
e caePb3.Scfld02_0       3566912 75 -  4147112 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I
e caeRem4.Crem_Contig15   400343 88 -  1794024 I

a score=0.000000
s ce10.chrX              2918037 34 + 17718866 GGAGTAGTAATTTCTAGACTGATATAGCATGTTT
e caePb3.Scfld02_0       3566912 75 -  4147112 I
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I
e caeRem4.Crem_Contig15   400343 88 -  1794024 I

a score=-1858.000000
s ce10.chrX              2918071 507 + 17718866  
s caePb3.Scfld02_0       3566987 445 -  4147112  
i caePb3.Scfld02_0      I 75 I 33
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106  55 +   484378 I
e caeRem4.Crem_Contig15   400343  88 -  1794024 I

a score=0.000000
s ce10.chrX              2918578 36 + 17718866 TTTCTATACATCATGTGATGTCTTTTATTATAATAC
e caePb3.Scfld02_0       3567432 33 -  4147112 I
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I
e caeRem4.Crem_Contig15   400343 88 -  1794024 I

a score=592.000000
s ce10.chrX              2918614 10 + 17718866 AAGCTCTTAA
s caeRem4.Crem_Contig15   400431 10 -  1794024 aaactcataa
i caeRem4.Crem_Contig15 I 88 C 0
e caePb3.Scfld02_0       3567432 33 -  4147112 I
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I

a score=-1173.000000
s ce10.chrX              2918624 21 + 17718866 AA--AACACGAACTATTTTTTAT--
s caeRem4.Crem_Contig15   400441 23 -  1794024 aaacaaaacgaataaATTTCAAT--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3567465 21 -  4147112 ----aaatctggtcttatttgttgt
i caePb3.Scfld02_0      I 33 I 4
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I
e caeSp111.Scaffold582    407106 55 +   484378 I

a score=-881.000000
s ce10.chrX              2918645  9 + 17718866 -AACTATTT-------T
s caeRem4.Crem_Contig15   400464  9 -  1794024 AGAACATT--------T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    407161  9 +   484378 -aacaattt-------t
i caeSp111.Scaffold582  I 55 C 0
s caePb3.Scfld02_0       3567490 16 -  4147112 -aattattcatcTTCAC
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17990   259893 3261 +   357190 I
e cb4.chrX              17665844 2313 - 21540570 I

a score=-109.000000
s ce10.chrX              2918654 20 + 17718866 ATTCT----TGTTTTAAAAAAAGT
s caeRem4.Crem_Contig15   400473 19 -  1794024 ATTTA-----Acatcgaaatgaaa
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    407170 12 +   484378 attcg-------ATCGAAA-----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3567506 24 -  4147112 ATTCGAacatatattgaaaaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   263154 20 +   357190 atttt----catattaaaaaatac
i caeJap4.Scaffold17990 I 3261 C 0
e cb4.chrX              17665844 2313 - 21540570 I

a score=446241.000000
s ce10.chrX              2918674 687 + 17718866  
s cb4.chrX              17668157 717 - 21540570  
i cb4.chrX              I 2313 I 19
s caeRem4.Crem_Contig15   400499 709 -  1794024  
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    407182 715 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3567530 756 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   263174 719 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-7328.000000
s ce10.chrX              2919361 23 + 17718866 TTACATTTGTATTTATTTTACTC---------------
s caeRem4.Crem_Contig15   401208  5 -  1794024 ------------------TAGTC---------------
i caeRem4.Crem_Contig15 C 0 I 16
s caeSp111.Scaffold582    407897  4 +   484378 -------------------TCTC---------------
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3568286  4 -  4147112 -------------------tttc---------------
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17990   263893 28 +   357190 ----------TTCCGTCCGTTTCTTTGTGAGTGTATGT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17668874 19 - 21540570 I

a score=217956.000000
s ce10.chrX              2919384 375 + 17718866 ACCAGATATTGCTCTTGTCACTGGGTCTCGAACCACAATTATGATTTTAGTGTTCGGATTTAAAGATTTGATTCTCTCCGGAGCCATTTTGCTGTGGAAATACGCCGGACTTTTTTCAATCGTCACCTCTCCAAATTTGGTTTCCGGCATTTGTTCCCTATAAATTATA---TCATTA-----ATTATTACCACTCATTTTCTCCTAGTCGCAATCTTTTTTGTTTACATCTAATCT-----------ACTG--CCCTT--CCGTCATTTTTCTTTCGTC-TTTCCCGCTATCTCAAACGCCAAGTTGCGTAACTTC-G------------ACCCCAGCCGGAATGTATC-GTTTTCAAGGTACGGCGTGACTTTATTCTCAAAAAAAGAGTTGC-AATTGTGTGGTCGGGAAA
s cb4.chrX              17668893 331 - 21540570 ACCTGATATAGCTCTCGTCACTGGATCTCTAACCACAATGATGATTTTGGTATTTGGATTCAGCGATTTTATCCTCTCCGGTGCCATTTTGCTATGAAAATATGCTGGACTCTTCTCAATCGTCACTTCGCCAATTCTCGTTTCCGGCATTTGTTCCCTATAAATTATACACTCACTC-----aatatattttattatt-------tgcCACCCGCT----------CATCTAATCTAGAAAATCGGAAC----CACGT--TGCCCTTTTTCTTTTGGTCTTTTCCCGCTATCTTCAATGAACGGTTGCGCAACTCCCG------------ACCCA---------GTCTC-GGTTTCAAGGTACGGTGTGA--------------------------------TATGGGGAAA-
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig15   401229 358 -  1794024 ACCAGAAATAGCTCTTGTCACTGGATCTCTCACGACAATAATGATCTTCGTGTTTGGATTCAACGACTTTATCCTCTCCGGTGCCATTTTGCTATGAAAATATGCAGGACTTTTCTCAATCGTCACTTCTCCAATTCTGGTTTCCGGCATTTGTTCCCTATAAATCATA---TTATTA-----GATAGTTTTGGTCGTTC----CACGTCTCcatcttttttatttgcaTCTAATCT---AAATCGGAACTG--CCCTT--cgcccatttttctttcttc-tttcccgcTATCTCGAATACCTGGTTGCGTAACTTC--------------ACCCG---------GTCTC-ATTTTCAAGGTACGGTGTGAC-TGACAGTT-----AAAAG-----AGTTACGTACGCAGGAA-
i caeRem4.Crem_Contig15 I 16 I 1
s caeSp111.Scaffold582    407915 376 +   484378 ACCCGAAATAGCTCTTGTCACTGGATCTCTGACGAcaatgataatttttgtatttggaTTCAGTGACTTGATCCTTTCTGGGGCCATTTTACTGTGAAAATAGGCTGGACTCTTCTCAATTGTCACCTCTCCAAGTTTCGTTTCCGGCATTTGCTCCCTATAAATTAtattattattgtttctGATAGTATTGGTCATTT----ATTGTctcaatcttttttatttgcaTCTAATCT---AAATCGGAACTGTTTCCTTTCTggca---tttctttcttc-tttcccgcTATCTTGGACGGTTGGTTGCGTAACTTC-G------------ACCCA---------GTCTCTATTTTCAAGGTACGGTGTGAC-AGACAGTC----AAAGAGTTACTGATTACGTCTTTAGGAAA
i caeSp111.Scaffold582  I 14 C 0
s caePb3.Scfld02_0       3568303 352 -  4147112 ACCTGAAATAGCTCTTGTCACTGGATCTCTGACGacaatgatgatttttgtattAGGATTCAGTAATTTTATTCTCTCCGGTGCCATTTTGCTATGAAAGTATGCTGGACTTTTTTCAATCGTCACTTCTCCAATTCTCGTTTCCGGCATTTGTTCCCTATAAATCATAATATTATTA------------------ATTT----ATTGTCT-ACTTCCTATAATGTGTATCTAATCT---GAATCAGGACCGTCTCCTT--TGCca---ttcctttcttc-tttcccgCTATCTCAAACGCCCTCTTACGTAACTTC-G------------ACCCA---------TTCTC-GTTTTCAAGATACAGTGTGAC-TGACTGTC-----CAGAGTTGA-GATTACGTATGAAAGAAA
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17990   263921 313 +   357190 ACCTGATATAGCTCTAGTCACTGGATCTCTGACAACGATGATGATCTTGGTATTGGGATTCAATGACTTGATTCTTTCCGGTGCTAATTTACTGTGAAAATACGCTGGGCTCTTTTCAATCGTCACTTCTCCAATCCTCGTTTCCGGCATTTGTTCCCTATAAATCATA---TCAAAG----------------TTATTT-ATGAACCCTTCCATCTTATTAATTGGCATCTAATCT---AAAAC-------------T----------TTCTTTTGTTC-TTCTCCGCTATCTCGAACGGCAAGTTACGTAACTCC-GTCCACTCAGTCTATCCA---------GTGTC-GTTTTCAAGGTACGGTGTGA-------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-16626.000000
s ce10.chrX              2919759 105 + 17718866 ----TTAGAAACTACTAAAGTTGACGCAACCCCCATTGCAAAATCAGCGATTGAAACGTTTGTTTAAGAATTCAAGGTGTTGCGTATTATATGGTTCAATTTTCAAATT
s caeRem4.Crem_Contig15   401588  22 -  1794024 ----TTAGAGAC-----------------------------------------------------CAATATTC------------------------------TAAATT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    408291  20 +   484378 ----TATGAGAC-----------------------------------------------------AGGAATTT------------------------------TGAA--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3568655  23 -  4147112 ----TGTGAGTC----------------------------------------------------TATGAAAAC------------------------------TAAATG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   264234  19 +   357190 CCCGTAGGTGAT----------------------------------------------------TGCGCAC--------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17669224   0 - 21540570 C

a score=274186.000000
s ce10.chrX              2919864 1008 + 17718866  
s cb4.chrX              17669224  757 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   401610  934 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    408311  907 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3568680  888 -  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   264253  934 +   357190  
i caeJap4.Scaffold17990 C 0 I 480

a score=27504.000000
s ce10.chrX              2920872 67 + 17718866 -------TTGGAAGACATCAGCAC-----GCAAAAACTTTATCGTATTGACAGCGGCAGCCATCTGTCAGAA--TTTTAGA
s cb4.chrX              17669981 79 - 21540570 CAAGACCCCCAAGGACGgcaaaaaatgacacaaaaactTGATCGTTTT--TGACAAGCGCCATCTGTCAAGAGTTTTTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   402544 67 -  1794024 ------CCGAGAAGACATCAACCA-----GCAAAAACTTGATCGCTTTGACAGCATCAGCCATCTGTCAGAA---TTTGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409218 65 +   484378 -------CCAGAAGACATCAACCA------GAAAAAGTTTATCGCATTGACAGCACCAGCCATCTGTCAGAA---TTTGGA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569568 65 -  4147112 -------CGAGAAGACATCAACCA------GAAAAACTTGATCGAATTGACAGCACCAGCCATCTGTCAGAA---TTTAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I

a score=1299.000000
s ce10.chrX              2920939 3 + 17718866 CAT
s caeRem4.Crem_Contig15   402611 3 -  1794024 CAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409283 3 +   484378 TAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569633 3 -  4147112 CAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I
e cb4.chrX              17670060 0 - 21540570 C

a score=377.000000
s ce10.chrX              2920942 44 + 17718866 CTCCATCATAAATGTTC--CAACT---AGTCAGTTGAAttaaagaagga----
s caeRem4.Crem_Contig15   402614 49 -  1794024 CTCACTCGCTAAGTCCCTCCAAGTCTTAGTCTGTCAATTTACAAAATGA----
i caeRem4.Crem_Contig15 C 0 I 9
s caeSp111.Scaffold582    409286 40 +   484378 CTCACT-------------TCACTCTCAGTCACTcaatttagaaaatgaagga
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3569636  0 -  4147112 C
e caeJap4.Scaffold17990   265187 480 +   357190 I
e cb4.chrX              17670060  0 - 21540570 C

a score=220.000000
s ce10.chrX              2920986 5 + 17718866 gtaga
s caeSp111.Scaffold582    409326 5 +   484378 atgGA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3569636 0 -  4147112 C
e caeJap4.Scaffold17990   265187 480 +   357190 I
e cb4.chrX              17670060 0 - 21540570 C
e caeRem4.Crem_Contig15   402663 9 -  1794024 I

a score=0.000000
s ce10.chrX              2920991 461 + 17718866 gttagtgggtatttggcttgaatagactaaaactggtccaaatggacagaatttcttaatgagatttcacaaaaaattccaaaaatgttttatgacggtcaaaattttgaaGCTAAAGAGACACTTGTCCTTTTTGCAGTCGTTGGAATTATAACCCTTTAATGCATATTTTGGTATTTTATCTCGCATAATTCTTTGATTGGCGACCAAAGTTGACTGAAATTAGATGCTTATAGGCCTAAAATGTGTTTCGATCAACGAATTTAAAATTACCAGAATATACCGTATAGgacaagaatccaaaaaaaatggtgttccagccgcgctgcgacaaagaaaaaattgcgaaaattcagattttgcaaagtttggctatttttttttcgaaaaattttgtgaagtctcattataaaattgggtgatttaggcaagtttcagttaaaaaaaaaacttcCTAGAAA
e caePb3.Scfld02_0       3569636   0 -  4147112 C
e caeJap4.Scaffold17990   265187 480 +   357190 I
e cb4.chrX              17670060   0 - 21540570 C
e caeSp111.Scaffold582    409331   0 +   484378 C
e caeRem4.Crem_Contig15   402663   9 -  1794024 I

a score=191.000000
s ce10.chrX              2921452 2 + 17718866 CT
s caePb3.Scfld02_0       3569636 2 -  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I
e cb4.chrX              17670060 0 - 21540570 C
e caeSp111.Scaffold582    409331 0 +   484378 C
e caeRem4.Crem_Contig15   402663 9 -  1794024 I

a score=-121.000000
s ce10.chrX              2921454 23 + 17718866 CAACTCCCTTTC--------------AA--AAACTACAT
s cb4.chrX              17670060 27 - 21540570 CAACtcactttt----------gagaaa--aagctTCTT
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0       3569638 37 -  4147112 CACTTCCCCTTCTAAGCCTTAAGAGAAATGAAACTAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I
e caeSp111.Scaffold582    409331  0 +   484378 C
e caeRem4.Crem_Contig15   402663  9 -  1794024 I

a score=-1064.000000
s ce10.chrX              2921477 3 + 17718866 -AGT
s cb4.chrX              17670089 3 - 21540570 ATG-
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   402672 3 -  1794024 AGG-
i caeRem4.Crem_Contig15 I 9 C 0
s caePb3.Scfld02_0       3569675 3 -  4147112 GGG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I
e caeSp111.Scaffold582    409331 0 +   484378 C

a score=36411.000000
s ce10.chrX              2921480 154 + 17718866 ------GAAAACCTATCCATCACCTCACCCCAAGTATTTTCTATTTCCTATCAGTCAGTCAGTAAGTGACTGGACGGTGACAC------CCCCCACACTTCTCGCGCACTGTACAACGCGTAGCATTCTCGTCATTAGGAGG-----------------------------TCTTCACATTGATTGATAT-ATTCC------------------------------------
s cb4.chrX              17670092 135 - 21540570 AAGCTAGGAAGCATATCCATCA--TCACTCTGGA-----TATATTTTCTATCAGTCAGTCA---AATTGAATGAGATTGACAC------CTCCCCATTGTTTCGCGCACTGTACAACG--------TTCCTTCAGTCGCAGAAGAC--------------------------------------GTCCCT-TCTATCC----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   402675 193 -  1794024 A------GAAGCGAATCCATCA--TCACTCAG-------TATATTTTCTATCAGTCAGTCAATGAATTGAGTGGGAGTGACAC------TTC--------TTCGCGCACTGTACAACG--------TTCCTCCAGTAGCAGAAGGCCATCCTCCCATTACAATTCATC-ACCCCACAGCGTGATGTACCT-TTTGTCTAAAACTGACACATTCAACTTGATTGATAAATTTC
i caeRem4.Crem_Contig15 C 0 I 44
s caeSp111.Scaffold582    409331 168 +   484378 ------AGAAGCGTATCCATCA--TCACTCAG-------TATATTTTCTATCAGTCAATCAA-----TGTTTTAGTGTGACAC------TTC--------TTCGCGCACTGTACAACG--------TTCCTCCAATAGCAGAAGGCCACCCCTCCTTCCTCCATCGCT-ATTCATCACTCTGATGGACCT-TTTATCCTAAATTGACATACC--------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569678 181 -  4147112 ------AAAAGCGTATCCATCA--TCACTCAG-------TATATTTTCTATCAGTCAATCAGGAAATTGAATGAGAGTGACACCCTCATTTC--------TTCGCGCACTGTACAACG--------TTCCTCCAGTAGCAGAAGGCCATCTTCCCTCCCCTTTCTTCTAATTCATCACTCTGATGGGTCTCTTTATCCTAACTTGACATGCC--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I

a score=-5100.000000
s ce10.chrX              2921634 34 + 17718866 GGCAAA--AAAAC------------------------------AAGAGCAGTTTCAATATTAAAAC-----
s cb4.chrX              17670227 37 - 21540570 ATCAAAGTGACGC----------------------GGGAATAGAGCAGCATT---------GAAAAAA---
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold582    409499 63 +   484378 --------AGAACAGACACTTGAATGACGAACTCAGTGAAGAGAGaggcttttttcaaatagaagaAGTCT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569859 33 -  4147112 --------AACAC------------------------------agaagcatttttcaaaatggagaaGTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I
e caeRem4.Crem_Contig15   402868 44 -  1794024 I

a score=4103.000000
s ce10.chrX              2921668 8 + 17718866 ACCTTCTA
s cb4.chrX              17670271 8 - 21540570 ACCATGCA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig15   402912 8 -  1794024 ACCGTGCA
i caeRem4.Crem_Contig15 I 44 C 0
s caeSp111.Scaffold582    409562 8 +   484378 AGCATGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569892 8 -  4147112 ACCATGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265187 480 +   357190 I

a score=69243.000000
s ce10.chrX              2921676 266 + 17718866 CAAAACAT------------CTT-----ATAGGAAACATACTTCCGTTGCGTAATTGGAGGACCCGGATTGTACAAGATGTTCT----TTGCACTGTCAAAA--GAACACGCCGG-----CTAAT-CCTGCACCAGCTGA-GACGTGTGCGGTCTATCATGGA-----------------T------GTTTTGAAG-----AGGAAATGG-----------------TTCATTAG--CGAGAA-------------------GCGCTGAGAAAAAACAACAAAATCTCT------CATAATTAATTCATACATAAGTGTCGG--GTTGTTCTTATGTTTCTATGCAGAGCATAATATTATTA---GACCATAT
s cb4.chrX              17670279 268 - 21540570 TAATATATTAATACCAGCCTCCTCATCCCTAACAAACATACTTCCGTTACGTAATTGGGTAC---GAAAGGGACAAGATGTTCT-----TAGCTTCCTAAAAATAGGGACC-GCG-----CTAAT-C--------------------CACAATCTGGTAGTT-------TTcgggtgtttt------tttttc--------gggaaaaggGGGAAGCTTTTGTAGGCTTCATTAG--GCGGAA-------------------AGGCATAATAGAAACACGGAGA-------------TAATTAATTCTTAGATGAGTGGCCg--ggtttttc------------aag-aaataatATTATTAGAGGAGCATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   402920 280 -  1794024 TAATATAT--ACACAA----CCTTA---CTAACAAACATACTTCCGTTACGTAATTGGAAGC--TGGGTTGTACAAGATGTTCT----CCGGACTGTCAAAAAGAAGAACC--CG-----CTAAT-CCGGCAGCTGAGAG-GAGGTGCATAATCTGGTTGGCG----GGTtctgtcgtttt------ttttttctttatgaaGGAAAAGG-----------------TTCATTAGTAAAGAAA-------------------GAACATGAAAGAAACATGGACCCTTCT--------TAATTAATTCTAACATAAGTGTCGGAAGATATTTT------------AAGTGAATAATATTATTA---GAACAtat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409570 285 +   484378 TAATATAT--ACCCAA----CATTT---CTAACGAACGTACTTCCGTTGCGTAATTGGCTTC-GGGGATGGTACAAGATGTTCT----TTGCACtgtcaaaa--gaaaaccaCCG-----CTAATCCCGGCAGCTGAGA--GATGTGCACAATCTGGTCTTGATGGCGGttcgattgtttttttctcttttctcgt-----aGGAAAAGG-----------------TTCAttag--cagaaa-------------------------aagaaacacgaGACGGGGTTC-CGGAAGATAATTAATTCTAACATAAGTGTCGGAAGATGTTTT------------AAGTGAATAATATTATTA---GAACATAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3569900 278 -  4147112 TAATATAT--ACCCAA----CCTTC---CTAACAAACATACTTCCGTTACGTAATTGGCAAT--GGGATTGTACAAGATGTTCT----TCGCACTGTCAAAA--GAGAGTC-CCG-----CTAAT-CCGCCAG-----------ATGCACAATCTGGTCTTCTTGGCGgttcaatcgtttt------ttttcttgt-----aggAAGCGG-----------------TTCATTAG--CAGAAAAc---------------ataataataagaaaaacaaggagCCTTTCTTAGAAGATAATTAATTCTCATATAAGTGTCGGGAGATGTTTT------------AAGTGAATAATATTATTA---GAACATAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   265667 277 +   357190 CAAAACAT--GTGGAA----ACAGC---CGCACACACTTCCTTCCGTTGCGTAATT---------GGATCGTACAAGACGTGTTCCGTCCGCACTATCAAAA--GAGCCTG-CCGGCCAACTAAT-CCGCCAGCTGAGTACTAGGTGCACAATCTGG----------------ATCGTGCC------GCTCCGGAATAGACAAAAAACGGATG--------------TTCATTAA--GAAAATACTGGTCCTTTGGAGTgttattgttaaaaaaaa---------------------taattaattcaAAGACAAGTGTCGGAAAATGTTTT------------AAGTGGCTAATAATATTA---GAAAATAT
i caeJap4.Scaffold17990 I 480 I 23

a score=-3189.000000
s ce10.chrX              2921942 20 + 17718866 AGTCCTT---TTCaaattatatt
s cb4.chrX              17670547  8 - 21540570 CCGGTCC---------------C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403200 23 -  1794024 cttctcctctttctgcTTTCTAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409855 20 +   484378 CTTTTCT---ATTCGCTTCCCAC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3570178 20 -  4147112 CTCCCTT---TTCCGCTTCCTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   265944 23 +   357190 I

a score=47674.000000
s ce10.chrX              2921962 462 + 17718866  
s cb4.chrX              17670555 404 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403223 544 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    409875 511 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3570198 517 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   265967 603 +   357190  
i caeJap4.Scaffold17990 I 23 I 102

a score=54502.000000
s ce10.chrX              2922424 126 + 17718866 CCATTAGAAATTGATGAACAACACCCT-------TATTTGTGCA-ATGTTCCT--CATCACCTGCTCCT-----TGG---CTGAC-T-CCCGCTAAG-AACAGCTTGGA----G-----CACCTGTG--------------ACTATATTT---TTATTTGTGCCCGTG----TGCCC---
s cb4.chrX              17670959 130 - 21540570 CTATTAGAAATTGATTAACAACACCG--------TATTTGTCCAGGAGGCCCTGAAATCACCTGCTTCTAATATACGATACGGACTT-CCCGCTAAGAAACAGCTTGGAATCCA-AGGGCACCTG----------------------------TTGTTTGTGCATGTG------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403767 140 -  1794024 CCATTAGAAATTGATGAACAACACCGCTGAGATATGTTTGTGCA-GCGTCCTCACCATCACCTGCTCCTAATATAGG---CTGAC-T-CTCGCTAAG-AACAGCTTCGG----A-GAAGCACCTGTG--------------AC--AGTTTTGTTTGTCTGTGTGTGTG------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    410386 139 +   484378 CCATTAGAAATTGATGAACAACACCGGCGAGATGTGTTTGTGCA-GTGTTCCCCCCATCACCTGCTCCTAATAAAGT---CTGAC-TCCCCGCTAAG-AACATCTCCGG----GTAAAGCACCTGTG--------------AC--AATTT---ATGTTTGTCCGAGTG------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3570715 160 -  4147112 CCATTAGAAATTGATGAACAACACCGTCTAGATATGTTTGTGCA-GTGGTCCTCACATCACCTGCTCTTAATATAGG---CTGAC-T-CCCGCTAAG-AACATCTTCGG----A-AAAGCACCTGTGCTTTCGAAGAagcaac--aattt---ttatttacaTTAGTGAATGTTGAT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   266672 117 +   357190 CcattaaaaattgatgaaCAACACCGTCAAGACTTGTTTGATCA-GAGGTCCCT-CATCACCTGCT--------------TTGAC-T-------AAG-AAATGCTCTGG----A----GCACCTGTG------------------ATCTC---ATGTTTGTGCGTGGA---------ACC
i caeJap4.Scaffold17990 I 102 I 37

a score=-3585.000000
s ce10.chrX              2922550 27 + 17718866 CATGTGCGTGTGATGCGGATCAAGTGT
s cb4.chrX              17671089  4 - 21540570 C-----------------------TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403907 27 -  1794024 CGTGAATGAGAAATGGGAATCGGAGCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    410525 22 +   484378 CATGATCGA-----AAGCATCGTGTGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3570875 22 -  4147112 CATGAATTG-----AGGCATCGTTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   266789 37 +   357190 I

a score=24559.000000
s ce10.chrX              2922577 49 + 17718866 CT--------TGTTTATGAACTGACAAGCT-TTAATGATGAATAACTTAGTAAATACA
s cb4.chrX              17671093 54 - 21540570 CCGGCGAGCTTGTTTATGAACTGTCTTCCGATAAATGATGAATAACTCAATAAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403934 49 -  1794024 CC-ATGAGCTTGTTTATGAACTGACAGACT----ATGATGAATGACACAGTAAA----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    410547 53 +   484378 CG-ATGAGCTTGTTTATGAACTGTCAGGAA----TTGATGAATAACACAGTAAACACG
i caeSp111.Scaffold582  C 0 I 83
s caePb3.Scfld02_0       3570897 53 -  4147112 CA-ATGAGCTTGTTTATGAACTgtccaaaa----atgatgaataacATTGCAAATACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   266826 47 +   357190 --------CTTGTTTATGAACTGACTGGCA-T--ATGATGAATAATACTGTCAATACA
i caeJap4.Scaffold17990 I 37 C 0

a score=128.000000
s ce10.chrX              2922626 5 + 17718866 AAATG
s caeJap4.Scaffold17990   266873 5 +   357190 GTATG
i caeJap4.Scaffold17990 C 0 I 47
e caePb3.Scfld02_0       3570950 0 -  4147112 C
e cb4.chrX              17671147 0 - 21540570 C
e caeSp111.Scaffold582    410600 83 +   484378 I
e caeRem4.Crem_Contig15   403983 0 -  1794024 C

a score=13.000000
s ce10.chrX              2922631 41 + 17718866 TACAGTATGACTCATT------CACC----TTCATAGGAAGTTGAGGTTGA
s cb4.chrX              17671147 37 - 21540570 TACAGTATGACTCAAA------TCTCAAGGTTT------CCTTCAAGTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   403983 48 -  1794024 TACAGTATGACTCAGAATAAATCTTCAAGGTTTATA---CCTCAAAACTTA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3570950 37 -  4147112 ----GTATGACTCATA------AACCAATCTTCCTGT--TCTCAACACT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   266878 47 +   357190 I
e caeSp111.Scaffold582    410600 83 +   484378 I

a score=237.000000
s ce10.chrX              2922672 42 + 17718866 GGATAGAACGCAATGAAAAAAAAACACAGAAAA-CACTAATTA
s cb4.chrX              17671184 29 - 21540570 --------------GGCAAAGGCAAAGAAGGAATTTCTAATTA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig15   404031 39 -  1794024 -TATTG--GAAGACGCCGAAAACAGAATAGGAA-TACTAATTA
i caeRem4.Crem_Contig15 C 0 I 19
s caePb3.Scfld02_0       3570987 38 -  4147112 ----TGAAAAAGATGCCAAAACCAGAGAGAATA-TTCTAATTA
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17990   266925 38 +   357190 GGATTGATTGAATTGACAA----ACGAAATATC-GACTAATTA
i caeJap4.Scaffold17990 I 47 C 0
e caeSp111.Scaffold582    410600 83 +   484378 I

a score=174479.000000
s ce10.chrX              2922714 474 + 17718866  
s cb4.chrX              17671225 459 - 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig15   404089 506 -  1794024  
i caeRem4.Crem_Contig15 I 19 I 16
s caeSp111.Scaffold582    410683 494 +   484378  
i caeSp111.Scaffold582  I 83 C 0
s caePb3.Scfld02_0       3571048 493 -  4147112  
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold17990   266963 515 +   357190  
i caeJap4.Scaffold17990 C 0 I 13

a score=787.000000
s ce10.chrX              2923188 7 + 17718866 TTTGGTA
s caeSp111.Scaffold582    411177 7 +   484378 GTCAATA
i caeSp111.Scaffold582  C 0 I 2
s caePb3.Scfld02_0       3571541 7 -  4147112 GTCAATA
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold17990   267478 13 +   357190 I
e cb4.chrX              17671684 0 - 21540570 C
e caeRem4.Crem_Contig15   404595 16 -  1794024 I

a score=0.000000
s ce10.chrX              2923195 529 + 17718866  
e caePb3.Scfld02_0       3571548  16 -  4147112 I
e caeJap4.Scaffold17990   267478  13 +   357190 I
e cb4.chrX              17671684   0 - 21540570 C
e caeSp111.Scaffold582    411184   2 +   484378 I
e caeRem4.Crem_Contig15   404595  16 -  1794024 I

a score=242.000000
s ce10.chrX              2923724 4 + 17718866 ACAA
s caeSp111.Scaffold582    411186 4 +   484378 ATAA
i caeSp111.Scaffold582  I 2 C 0
e caePb3.Scfld02_0       3571548 16 -  4147112 I
e caeJap4.Scaffold17990   267478 13 +   357190 I
e cb4.chrX              17671684 0 - 21540570 C
e caeRem4.Crem_Contig15   404595 16 -  1794024 I

a score=-128.000000
s ce10.chrX              2923728 1 + 17718866 G
s caeSp111.Scaffold582    411190 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   267491 1 +   357190 G
i caeJap4.Scaffold17990 I 13 C 0
e caePb3.Scfld02_0       3571548 16 -  4147112 I
e cb4.chrX              17671684 0 - 21540570 C
e caeRem4.Crem_Contig15   404595 16 -  1794024 I

a score=207.000000
s ce10.chrX              2923729 1 + 17718866 G
s caeRem4.Crem_Contig15   404611 1 -  1794024 G
i caeRem4.Crem_Contig15 I 16 C 0
s caeSp111.Scaffold582    411191 1 +   484378 A
i caeSp111.Scaffold582  C 0 I 1
s caeJap4.Scaffold17990   267492 1 +   357190 G
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3571548 16 -  4147112 I
e cb4.chrX              17671684 0 - 21540570 C

a score=-4602.000000
s ce10.chrX              2923730  8 + 17718866 AAAAGT------AT----
s cb4.chrX              17671684 12 - 21540570 -GAAGCTATCAGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   404612  7 -  1794024 AAAAAC------A-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    411193  7 +   484378 AGAATC------A-----
i caeSp111.Scaffold582  I 1 C 0
s caeJap4.Scaffold17990   267493  8 +   357190 ---ATT------A-GCCC
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3571548 16 -  4147112 I

a score=432559.000000
s ce10.chrX              2923738 1080 + 17718866  
s cb4.chrX              17671696 1111 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   404619 1194 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    411200 1109 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3571564 1125 -  4147112  
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17990   267501 1124 +   357190  
i caeJap4.Scaffold17990 C 0 I 878

a score=-4550.000000
s ce10.chrX              2924818 59 + 17718866 T---GAATATATTATTTAGGTCGGTATTG-----------------AAAAGGAAAATA-------TAATTAAAAA-----ATGTAAAAAAG
s cb4.chrX              17672807 73 - 21540570 TCCATATTTTC-AATTCAGGTGGGaatag-----------------aaaatgggaaaattgcttttgatcaaaaatggaGATGCCGAGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   405813 54 -  1794024 T---GATTTTA-TATTCA---AGGTatgg-----------------aaaata-------------tatttggaaaTATAAAtgtcgaaaag
i caeRem4.Crem_Contig15 C 0 I 55
s caeSp111.Scaffold582    412309 49 +   484378 A---TATTTTG-TATTCAGGTGGGAACTC-----------------GAAATAAAAGAGag-----caattgagaa----------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3572689 73 -  4147112 A---TATTTTG-TATTCAGGtctctattcaattttatattcaGGTGGGAATAAGCGAAAg-----caattgagaatgaaaaa---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   268625 878 +   357190 I

a score=2219.000000
s ce10.chrX              2924877 27 + 17718866 CACCAGTGGGAAAATTAAAAAAAAAAC
s cb4.chrX              17672880 20 - 21540570 -------ccgaaaaataagaaaagaac
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    412358 12 +   484378 ---------------aaaagaaacaac
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3572762 19 -  4147112 --------ggaaaagaaaagaaacaac
i caePb3.Scfld02_0      C 0 I 256
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeRem4.Crem_Contig15   405867 55 -  1794024 I

a score=-547.000000
s ce10.chrX              2924904 2 + 17718866 CA-
s cb4.chrX              17672900 2 - 21540570 -aa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    412370 2 +   484378 cA-
i caeSp111.Scaffold582  C 0 I 197
e caePb3.Scfld02_0       3572781 256 -  4147112 I
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeRem4.Crem_Contig15   405867 55 -  1794024 I

a score=-3135.000000
s ce10.chrX              2924906 312 + 17718866 TTTGGAAATTTATTTATT--AAAAGTCAAAATGTTGTAATTACTGACTGTGAGTTTTTGCCACTTTTTGGGAAAACTATTGGACTGTCGAGCCCCCACAATGACCATAGAAATCAAAATGAAACTTTTTTTTTGATCGACGGCTTTCAAATACTTCCGAAGACTTCCAAAA----AGTGGCAAA----AACTATgatttttccaatttttaaaaaatcattaaaaatttt------------aaattaattaaaaaaaaaatttttcactatgtaacttggtcattgtagtacaactggcTGGTTGGTGCTACATTATTTTTTTAGACTCCTCG
s cb4.chrX              17672902 224 - 21540570 ----gaaaTGGAGACATCTAAAAAGTGACAACTCCGT----------------TTCGCGTCG-TTTTCGGGAAAAC-----------------------------------------------CGCGTTTTTCCATTAAGGG-----GAGAGTTTTTGGGGATTCATAAAATCTTAGTGGGAAATCTTGTCCACGAGTATATAgagctgaaaagaa--aataagaatttttagaatgagATGAAATGAATTGacgaaaatttattt-------tgactGGA--ATTGAAATGAGatagga---------------------tttaaa-----aa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3572781 256 -  4147112 I
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeSp111.Scaffold582    412372 197 +   484378 I
e caeRem4.Crem_Contig15   405867  55 -  1794024 I

a score=1989.000000
s ce10.chrX              2925218 73 + 17718866 ATTATTTGGAGCAAGTTTTTTGGGGACTCAATGTCATAAAAGTGTTTTTGCGAAAAATCTCCAAGACAATATA
s cb4.chrX              17673126 37 - 21540570 aatagtaggaacaaattt---------------------------------gaaaa---tccaaaaaagttaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   405922 66 -  1794024 ATTAATCGGAGCAAGTTTTGTCCGGA------GCTATAAAAAC-TTAATGGGAAAAATCTCCAAGACAATGTA
i caeRem4.Crem_Contig15 I 55 I 130
e caePb3.Scfld02_0       3572781 256 -  4147112 I
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeSp111.Scaffold582    412372 197 +   484378 I

a score=-2699.000000
s ce10.chrX              2925291 567 + 17718866  
s cb4.chrX              17673163 492 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3572781 256 -  4147112 I
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeSp111.Scaffold582    412372 197 +   484378 I
e caeRem4.Crem_Contig15   405988 130 -  1794024 I

a score=705.000000
s ce10.chrX              2925858  7 + 17718866 -TCAGTTT---------
s cb4.chrX              17673655 17 - 21540570 TCCAACTTCATAAATTC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    412569  7 +   484378 -tcagttt---------
i caeSp111.Scaffold582  I 197 I 4
s caePb3.Scfld02_0       3573037  7 -  4147112 -tcagttt---------
i caePb3.Scfld02_0      I 256 I 4
e caeJap4.Scaffold17990   268625 878 +   357190 I
e caeRem4.Crem_Contig15   405988 130 -  1794024 I

a score=109994.000000
s ce10.chrX              2925865 326 + 17718866 TTCC--CAGCTCTCAATTTTCACGGATCTTCTATTATT----CTTGCAAA--TTTGTCGGCTCGGTTGGGCTTTTGATGA-----GCTCCAAGTCCATCCCT----CTCTCGGCGCAATATGCTAATTCAAAGGCAGATAATCGTGCTTCCAAAGTT-AGCTGGAGAAGTTACTCATCCGGAACGGAGCAT----------------TTGAAGGATGAGAAGA-AGCGGA----AAAGTTTG-TTGTGAGGTAAGCTCTCGGCTTTCTTTC----GTTCTT-AAATTGAATTTG-AGAAATACTGGACCCGCAAGGCAGGACAAA----TCTAGGCACCGAGCT--------TGAGAAAA--------------GAAGAAGAAAGCAAAATGGAAACG
s cb4.chrX              17673672 324 - 21540570 CCCCGGCAGCTCTCAGTTTTCACGGATCCTCAATTATtcaccctt-caaaattttgct-atgCGG-TGCGCTTTTGATGAGCTACGAT--GAGTCTCTTCCCCCCTCTATTCGCGCAATATGCTAATTCA-------GTAATCGAGA----AAAGTTGGGTTTGAGAACCAACTCATCCGGAacggaaaaga------------------------gagaagacaACGAC----AAACTTAG-CTTTGAGGTAATC-CAGagctttctttct---tttcttaaaattcaatttgtgGAGGGAAAGGGAGACT--------ACAAATCTTTCTGGG-ATAGAGCTGTGAATGGAAATAGAA--------GAAATGGAAA--------GGAATAGAAACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   406118 337 -  1794024 TTCC--CAGTTCTCAGTTTTCACGGATCTTCAattatt----ctt-caaa--tttgttgGTGCGG-TGCGCTTTTGATGA-----GAT--GAGTCGCTTTGCCTTACTCTCGACGCAATATGCTAATTCAACGGCAGATAATCGTGGCTTCGAAGTT-AGTTTGAGAGCCTACTCATCCGGAACAGAGAAGAGTTTTTGGGTGAATCCCCAAATCGGCGAAGA-AACGAC----AAACTTTG-TTTTGAGGTAAAG-ATTGGTCGTCTTTC----TttcttaaaattgaatttggtgaaagaCTGCAAG-----------ACAAA----TCTGCG-ATTGAGcc--------aaagagaa--------gaaatgaaagaagaaaacgaaatggAAACG
i caeRem4.Crem_Contig15 I 130 C 0
s caeSp111.Scaffold582    412580 325 +   484378 ttcc--caGTTCTCAGTTTTCACGGATCCTCAattatt----ctt-caaa--tttgCTGGTGCGG-TGCGCTTTTGATGA-----GAC--GAGTCGCTTTCTCGTGCTCTCGGCGTAATATGCTAATTCAGCGGCAGATAATCGTGCCTCGAAAGTT-GGTTTGAGAGCCAACTCATCCGGAACAGAGAAA--------AGTTGATCCAAAT-------AGGA-AACG------AATTCTTG--TGAGAGGTAAAC---TGGCAGTCTGACGGGCTTtcttaaaattgaatttg-tgaAAGATTGGAGGCTT-CCACAAGACGAA----TTTACG-ATTGtgca--------gaaaagag-------------aaaagaagaaaacgaaatggaAACG
i caeSp111.Scaffold582  I 4 C 0
s caePb3.Scfld02_0       3573048 351 -  4147112 ttcC--CAGTTCTCAGTTTTCACGGATCTTCaattatt----ctt-caaa--tttgcTGGTGCGG-TGCGCTTTTGATGA-----GAT--GAGTCTCTTTCCCGAGCTCTCGACGCAATATGCTAATTCAGCGGCAGATAATCGTGGCTCTAAAGTT-AGTTTGAGAGCTTACTCATCCGGAACGCAGAAAACTTTGAGAGTCGATCCCAAC--------GGA-AACGATGAGAAAGTTTTGGCTGTGAGGT-AAC---TGGTGGTCAATCTGGCTgtcttaaaattgaattta-ggGAAAACTGGAGGCCT--GACAAGAAAAA----TCTACG-ATtgagca--------gaagaaaagaaggaaagaaatagaagaagaaaatgaaatggaaacg
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17990   268625 878 +   357190 I

a score=175014.000000
s ce10.chrX              2926191 267 + 17718866 CAAGCTGAGACATTTATG---AGCGCAGTAAACGAGTCTGTTAAC--------CAAACCT-AATATGGGAAAGTGGTATTCAGCTGGATATGAAGAA--------------------------------------AAATGAGAGGAAATGGGG------CAC-------CAAAAC---------TTTTTAGTAACAGATGTTGATGCGTTGTTATTTGAGATATGTATAGT----CAAATTCTATTGATGGTG-AA----------CGAAGAGCAGC----TTCACCAATTAGACAAACTGACACATATGTTGTGACAATGTACAATGCGCACTA----AGAATAAATTACAAG-GAACGAT----------------------G
s cb4.chrX              17673996 320 - 21540570 AAGCCCGAGACATTTATG---AGGCCAGTAAACGAGCCTGTTAACTGAGTGAACAAGACT-AATAAAGGATAGTGG--------------------ATTTGGGTCAAGAAGGGGTTGTTGAAAAAAGGGGGGATGAAATGTAA------GAGGACATGGGGT------GTCCAAC---------TTTTTGGTAACAGCTGTTGACGTGTTGTTATTCGAGCCATGTTCAGTCTCACCAATTCTATTGATGAAGAAA------------AGGAGCAGC----TTCACCAATTAGACAAACTGACACATATGTTGCGACAATGTACAATTCCATCTTTCACGGAATAAATTACAAG-GAACGATGTGCGGATGTTTGCGCGAC---G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   406455 341 -  1794024 CAAGCTGAGGCATTTATG---AGCGCAGTAAACGAGTCTGTTAAC--------CAAGACT-AATATAGGAAAGTGGTa-gaagacggatatgaaaaaatgaagtgaaaaaggagacatgaaaaggagaatgaagagaaggggatgagttgagaaCATGTCGTCGTATCGCCCAactttttggtatttttggtAACAGCTGTTGACGTGTTGTTATTCGAGCTGTGTATAGT----CAAATTGTATTGATGGAG-AA------------AGGAGCAGC----TTCACCAATTAGACAAACTGACACATATGTTGCGACAATGTACAATACGCTGTC---CGGAATAAATTACAAGAAAACAATGTGA-------TGCGCGACGATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    412905 303 +   484378 CAAGCTGAGGCATTTATG---AGCGTAGTAAACGAGTCTGTTAAC--------CAAGACT-AATATGGG-AAGTGGTAAGGAGACggatatgaaaaaatgaaatggagaagTGGG-------------------AGAGAGGGATGAGTTGAAG----AGTGT-------CCCAAC---------TTTTTGGTAACAGCTGTTGACGTGTTGTTATTCGAGCTGTCTGTAGT----CACATTCTATTGATGGAG-AA----------GGAAGAGCAGC----TTCACCAATTAGACAAACTGACACATATGTTGCGACAATGTACAATGCCTAATA---CGGAATAAATTACAAG-GAACGATGCGA-------TGAGCGATGatg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3573399 304 -  4147112 CAAGCTGAGGCATTTATG---AGCGCAGTAAACGAGTCTGTTAAC--------CAGTACT-AATATGGGAAAGTGGTATTGAGACggatatgaaaaaatgaaatggagaGGAGAG--------------------GCAAGACATGGGTTGGAG---TAGTAT-------CCCAAC---------TTTTTGGTAACAGCTGTTGACGTGTTGTTATTCGAGCCATGTATAGT----CAAATTGTATTGATGGAG-AA----------CGAAGAGCAGC----TTCACCAATTAGACAAACTGACACATATGTTGCGACAATGTACAATGCCTTACA---CGGAATAAATTACAAG-GAACGATGTGA-------TGCGCGACGATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   269503 277 +   357190 CGAGCCGAGCCAGTTTTGAAAAGAGATGCAGAAGAG---ATGaaa--------aaaaCCTGAAtacggaaga---------agaagaatatgaAGAA-------------GGGGT--------------------TCGTGACAAGAGATGACC-------AC-------GACAAC---------TTTTTGGTAACAGCTGTTGACGTGTTGTTATTCGAGCCGTGTATAGT----CAAATTCTATTGACGAGA-AGAGTCGAAAGGAGGGGAGCTGCTTCTTTCACCAATTAGAGAAACTGACACATATGTTGCGACAATGTACAATGCGTATTC----AGAATAAATTACAAG-AGAGGATG----------------------
i caeJap4.Scaffold17990 I 878 I 311

a score=-1321.000000
s ce10.chrX              2926458 18 + 17718866 GTTCTC--------ATGACACTATTT----------
s cb4.chrX              17674316 27 - 21540570 GTTTTCGATCCTTGTTGAA-----TTCAAACT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   406796 34 -  1794024 GTTTTCG--CCTTCTTGACACCATTTCTAACTTCAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413208 33 +   484378 gttttc---ttttcttgacaccatttttctcatttc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3573703 30 -  4147112 GTTTTG---TCTTTTTCACACCATTCCTTTCAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   269780 311 +   357190 I

a score=69223.000000
s ce10.chrX              2926476 201 + 17718866 AAGGGGAGATAGTAGGCATAAG-GAAAAACAAAAAAAAAGAACCATG----AAGATCTCAGAAAAATGATTGGATTGGCAGTGGCAGGTGGTG-----------AAG-AGCTC------GTGTAC--TCTGTAAGACTATATAG--GTGCGGTGGAGCATGTGATTTGATTGACTGGCAATGTACAAACCAGGCATAGCCGAAGAGC---CCTCACTTAAGCTTTTAAATG
s cb4.chrX              17674343 185 - 21540570 ------------AGGTCTGAAG-AATaggaaaa------------------------actgagaaaaa-------tgcTAGTAGCAGGTGGTGTTGACGAGGTTAAGGAGCTCTGAATGggacga--gaaaaaaaacgatcaAGGTGTGCAATGAAGCGAATGATTTAATTGACTCGCAATGTACAAACCAGGCATGGAGAAGAAGCCCTTTCCACTTAAGCTGGTAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   406830 187 -  1794024 ATAGAATACAAGAAGCtagaagaaataagaaaa------------------------ccaAATAAACG-------TTTAGGTGGCAGGTGGTGTTGACGAGGTTAAGAAGCTC------GTGTAC--TAGAAAAAACGATAAAG--GTGCAATGAAGCATATGATTTGATTGACTGGTAAAATACAAACCAGGCATGGCCAATGAGC---TTTCACTTAAGCCTTTAAATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413241 166 +   484378 taaGGGCCGGACTGGCAGTTGG-AATaaacaa-------------------------ctcaaaaaatg----------tcttGGCAGGTGGTA-----------AAGAAGCTA------GTGAAT-------GAAACGATGAAG--GTGCAATGAAGCATGTGATTTGATTGACTGGTAATGTACTAACCAGGCATGGCCAAGGAGC---TTCCACTTAAGCTTTTAAACG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3573733 187 -  4147112 ----AGTAAAACTAACCAAAtg-gataaacaaaaaa---------------gatcttcttaagaaaaga--aaagggttGGTGGCAGGTGGTG-----------AAGAAGCTC------GTGTACTGAATAAAAAACGATAAAG--GTGCGATGAAGCATGTGATTTGATTGACTAGTAATGTACAAACCAGGCATGGCCAAGGAGC---TTCCACTTAAGCCCTTAAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   270091 189 +   357190 aaggaaagaaaagaaaacgaag-caaaacaaaacaaaacgaaacgaaacgcaacgcaacgTATAAGCG-------GATTGGTGGCAGGTGGTT-----------AAGCAGGTC------ATTTActaggaaaaaaacgaaaacg--gCGCAATGAAGCGTGTGATTTGATTGGCTGCTAATGAACAACC------------AAGAGC---TACCTCTTAAGCCGGTAAATG
i caeJap4.Scaffold17990 I 311 I 546

a score=-36356.000000
s ce10.chrX              2926677 160 + 17718866 ---GTTAGGATTATTTTT-----TATTCAGACGAGAT-----GGATAATTATCAATGG--------TACAGGAAAA----------------TGATTGGCAGGttttttttttaa-----------------------------------------attaaaattaCCATTTTCATTGCATGCAC-----ACGTATAATATTTTCA-GAG-----AAAGATACAT---ACTCCCAACTATTGCGATTTCGGC----
s cb4.chrX              17674528 206 - 21540570 GTATTGGGACTTATTTTTGGTGCATTGGAGAAGAGGGAGG--AGGTAATTATCCTTGGTAATTGCTTACaaaaaaaCGTAATCCAGGGAATTGGGATCGTTAG---TTACGGTAATAGAATAATCC-------------------------------TTCGAGGAAATGATTGGAAT-TATATAC-AGTAACGtcgaaaaaatata-gaa-----aaaaatattttcgatt--gatttttgaccattttgac----
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig15   407017 151 -  1794024 ---CTCAGGATTATTCTT-----CTTATTCAAGAGGAGAA--GGGTAATTATGGTGAG--aatgatgagagaaaaa--------------------------------acgatAA-GCAGTAATACAT----------------------------ATTTAAGAGACGATTTTCAAT-CGT------------TCtataatattaa-aaa-----aaggatATGT---ATT--TAATTGTACCCAAGT--------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413407 137 +   484378 ---ATCAGGATTATTTTT-----GCTGAAGAATAGACTAG--AGGTAATTATTATGGT------------AAGAAA----------------TAGATG---GG---TTCTCGTAA-TTAATACTCA------------------------------ATTACA------------AAT-CCTTCTC--------TCGAAAATACAGACCAATTTCCaagattctat---ttt--tatt------------------c
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3573920 203 -  4147112 ---GTCAAGATTATATTT-----TTGGATG---AGATTGGAAAGGTAATTATTATGAG------------GAAAAA----------------TGGCTGGTTGG---CAATAATAA-TTGATATTCAGGGATTTGTTCTTGATCCTACAATTGTCTCATTACATGGTTCA--TGGAAT-GATTCAcaaacaaaacttgaaattcagA-CAGTAGCTAAAACTCTTT---CTT--TCGAAG-GGCCATATTGaaaacc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I

a score=-6324.000000
s ce10.chrX              2926837 128 + 17718866 --------------AGGAGCT-----------------GGAATTTCCTATTGCCACACACCCCGGGTCCCAGCACACATTATTTCCTTC----------------------------------------------------AGCA---------TACCGCCATATGTCATGTATGAGATACCTGCCTTCTG----TTTCTAATCTCATTGTAACATCTTGAATA
s caeRem4.Crem_Contig15   407168  89 -  1794024 -----AG--AAGAC-ATATCT-----------------CGATTGACTCATACCAA---------------------------TCCCTTG----------------------------------------------------TATA---------TTCCGCCATATGTC-----------ACACG-----------TGGGTAATCTCATCGTACCATCTTGAGAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413544 103 +   484378 acaATAATCAATACGATAATT-----------------tacttttcttgt--------------------------------tttctcg----------------------------------------------------tGCA---------TTCCGACATATGAC-----------ACCAACCTTCTGTCGTTTTTTAATCTCACTATACCATCTTGCAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574123 203 -  4147112 atactaa--aaaactaaaactgggtgtgaaacgaaaaatacttttttttttacaaaatattaaaactgaaaaca--------tttctagAATTATCACATAGTAACAATTCCGGATTGAACTGATCTCATATCTCACCACCTGCAGCTCCCAGCCCTCGACAGATGAC-----------ACTTACCTTCTGCCACTTCCTAATCTAACTGTACCATCTTGTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I
e cb4.chrX              17674734  85 - 21540570 I

a score=5508.000000
s ce10.chrX              2926965 58 + 17718866 TCTATAACACGGT-----CATTTAATAACGGCCTTCCTCTTTAATTAACTCGTCAGTATTTGA
s cb4.chrX              17674819 59 - 21540570 TTTGTATCA-ACATATTTTATTAacaattctag---tttttcagttattcccGAAATTTGGAA
i cb4.chrX              I 85 C 0
s caeRem4.Crem_Contig15   407257 57 -  1794024 CCTAGAACT-AGA-----CATTAACGTTCATATATCCTCTTTAATTaactcatcattttttga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413647 50 +   484378 GTG--------AT-----CATTTACGTCCACACATCCTCTTTAATTaactcatcattttttga
i caeSp111.Scaffold582  C 0 I 23
s caePb3.Scfld02_0       3574326 57 -  4147112 TCGTCAACT-ACT-----CATTTACGTTTATCTATCCTCTTTAAttaattcatcattttctgg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I

a score=-100.000000
s ce10.chrX              2927023 12 + 17718866 TTGTGACCTCAT
s cb4.chrX              17674878 10 - 21540570 CGACTTCTGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   407314 12 -  1794024 cgattACCTCAT
i caeRem4.Crem_Contig15 C 0 I 102
s caePb3.Scfld02_0       3574383 12 -  4147112 cTGTTGCCTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeSp111.Scaffold582    413697 23 +   484378 I

a score=-445.000000
s ce10.chrX              2927035 31 + 17718866 ATTTA--------AGACTGAAAGATGGAAAAAAAA--TGTT
s cb4.chrX              17674888 41 - 21540570 CTTTAaggttttcagtacaaaaacgggttAGAAAGAATATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3574395 26 -  4147112 -------------AATTCGGTAACTTGACAGGAAG--TGTT
i caePb3.Scfld02_0      C 0 I 57
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeSp111.Scaffold582    413697 23 +   484378 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=297.000000
s ce10.chrX              2927066 8 + 17718866 AACCGGGT
s cb4.chrX              17674929 8 - 21540570 ATTCGGAT
i cb4.chrX              C 0 I 106
e caePb3.Scfld02_0       3574421 57 -  4147112 I
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeSp111.Scaffold582    413697 23 +   484378 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=0.000000
s ce10.chrX              2927074 13 + 17718866 TATTTAATACAGA
e caePb3.Scfld02_0       3574421 57 -  4147112 I
e caeJap4.Scaffold17990   270280 546 +   357190 I
e cb4.chrX              17674937 106 - 21540570 I
e caeSp111.Scaffold582    413697 23 +   484378 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=-1301.000000
s ce10.chrX              2927087 87 + 17718866 TTTATAATACTAGAACTAATTTTACTATTTTCTGATACATTGTAATGCAGATATGGATTCTATTGCACTTTGGCATTAGAAGAGCTC
s caeSp111.Scaffold582    413720 27 +   484378 tttggaata-------------tacTATTCTT-------TTGTTATG----------------------------------------
i caeSp111.Scaffold582  I 23 C 0
e caePb3.Scfld02_0       3574421 57 -  4147112 I
e caeJap4.Scaffold17990   270280 546 +   357190 I
e cb4.chrX              17674937 106 - 21540570 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=923.000000
s ce10.chrX              2927174 13 + 17718866 AATTTGAAAGAAC
s cb4.chrX              17675043 13 - 21540570 agcttgacagccg
i cb4.chrX              I 106 C 0
s caeSp111.Scaffold582    413747 13 +   484378 AATATGACAGAAA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3574421 57 -  4147112 I
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=-25627.000000
s ce10.chrX              2927187 154 + 17718866 ATGACTTAAATTCAAAAAATAAAAA-------------------CTTGTGGAAGTTTTTTGTATTTTTAGGTTCAGCTGACTATTATAGCCTAC---------------------------------AGAGTGTAAACTTTAACTTATTAAAGTA----------GGAGTAA--GACAATTTTTTAAGCCAATATATAACTGAAAAAATATAAAAATT---------
s cb4.chrX              17675056 208 - 21540570 agcACCAGGATTCggaaaatagtaaaaattgtcaaaaatcaactttaaaagaatttttttatactttttgacCGATGCTCATCTGTCAGTCAACTACTGTTCGAAATCTTCtctacaaaaattataaatgaCTCGACCTTTATGGTATTCAATGA------------AGcgttatgaaaattttaaagccatt------ttgattggata-aaaaattccaaatctt
i cb4.chrX              C 0 I 167
s caeSp111.Scaffold582    413760  44 +   484378 ---------------------------------------------------------------------------------------------------------------------------------------------------TTGAGTGA------------AGTAAT-CGAATATTCTGCAGAC----------TGATACGTCA-AAA---T---------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574478  73 -  4147112 -------------------------------------------------------------------------------------------------------------------------------ATGACATAAC-------GCCTGGAATGACAACTTGTCACGAGCAG--CGATAATATTGAAGATG--------GTGGGatgaga-aaaattt---------
i caePb3.Scfld02_0      I 57 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=-6702.000000
s ce10.chrX              2927341 101 + 17718866 GGCTTAAAAAGTGCCTTAAGCAATGAAATACCAGtttttgagtagttttttttaaattcgtatatttgagcacattttg--------------agttgataccttgaataaccag
s caeSp111.Scaffold582    413804  41 +   484378 GTTT------------------ATG----------------------------CAtgcaaaata--tgaaaacattGTC--------------AATTGTTG------------AA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574551  78 -  4147112 ggtt------------------atgtaa-----------------ctttttctcaatcaaaGCAATCAGAACCATCGTATAGAATATCATCTGAAATATTACATACAACA--TAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I
e cb4.chrX              17675264 167 - 21540570 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=-14711.000000
s ce10.chrX              2927442 65 + 17718866 gaaccgatactctttctttaaCAAAATGCCTGATGTTTTCTTCCAA-------------------------AGCATGCAGCAAAAGTTTC--------
s cb4.chrX              17675431 92 - 21540570 AAACAGACGC---ATCTTTAATTAA---CTCGTCACTTTATGCTGATCGTTCGCCTTATTGCAGATGCGCCAGTATACAGTAGAAAGAcaaaaattgt
i cb4.chrX              I 167 I 28
s caeSp111.Scaffold582    413845  5 +   484378 GAGTA---------------------------------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574629 41 -  4147112 CAGCA-------------TAACTA-------------TTATTATAATTG-------------AAATGTTTATGCAtgcaa------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I
e caeRem4.Crem_Contig15   407326 102 -  1794024 I

a score=7272.000000
s ce10.chrX              2927507 50 + 17718866 AAGTATTAATGCA-------AAAACATGGACAATTGTTGACAGGTAAAGTGCGCCCG
s cb4.chrX              17675551 45 - 21540570 GAGTATTCATGCAA------AAAGCATTGTCA-----CAAGAGGTAAAGAGT-GCCG
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig15   407428 57 -  1794024 AAGTATTCAtgcaaaacatgaaaacattGTCAATTGTTGAGAAGTAAAGTGCGGCCG
i caeRem4.Crem_Contig15 I 102 C 0
s caeSp111.Scaffold582    413850 11 +   484378 ----------------------------------------------AAGTGCGGCCG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574670 43 -  4147112 --------------aacatgaaaacattgTCAATTGTTGAGAAGTAAAGTGCGGCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   270280 546 +   357190 I

a score=72940.000000
s ce10.chrX              2927557 222 + 17718866 TTTGGCCACTTGACAAGTT---ACATGAAAC--TTCGAATTGACAAAATAATTGACC---GCATTCTCTAACTCGTCATGTTGTCAATTGCAC-GTGTCTAC----TGGTGGG-AAAGAGCT-TCGACTTTCAC-----CCTGCTCGCCGCACTGAAC-------TAGCATGTAATTGTGTC---------------TCGCAAAGTTTGTGACTAACT-----GGAGGGATAACA----------AAGTTAGAAGC---ACAGAATAAAATGAAACGTACTA
s cb4.chrX              17675596 227 - 21540570 ---GGGCACTTGACAAGTTACAacatgaaacttttcaaattgacaaaataattGACCACAACATTCTCCAG-----CAACTTGTCAACTGCATAGTGGT---------GTGGGAAAAGAGCTATGA-------------AGGGCTCAAAGTGCTCCTA------TATGTATGTAATTGTGTCGTGTTGTGttgtgttttgaaaatg-----agtcGTA-----GACTTGGAATAG---ACTAActggga---aatt---gagaaaaaaaaggcaaagtACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   407485 240 -  1794024 TTTGGCCACTTGACAAGTT---ACATGAAAC--TTCAAATTGACAAAATAATTGACC---GCATTCTTCAGCTCGTCATGTTGTCAATTGCAC-GTGTTTAC----TGGTGGGAAAAGAGCTCCCGACCGCTCCGTGTCAGTGCTCAGAGTACGC----------ATATATGTAATTGTTTC---------TGTGTTTTGCAAAAGTT-TCAATCATGTATGTtacttgaaatga------aaatgagaatgagtC---GAACAAAAGATAGAAAAGTACTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    413861 225 +   484378 CTTGGGCACTTGACAAGTT---ACATGAAAC--TTCAATTTGACAAAATAATTGACC---ACATTCTCCAGCTCGTCATGTTGTCAATTGCAC-G-----------TGGTGGGAAAAGTGCT-TGGATCTGTGT-----GTGGCTCAGAGTACTTAAA-------ATATATGTAATTGTGTC---------TGTGTTTTGCAAGTTTTGTGACTCATT-----TGCTTGAAATGA----------GGGAATGAAACTCGaacaaagaagagaaaaagtgctA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574713 225 -  4147112 CTTGGGTACTTGACAAGTT---acatgaaac--ttcaaattgacAAAATAATTGACC---GCATTCTCTAGCTCGTCATGTTGTCAATTGCAC-GTGTCGGTCGACTGGTGGGAAAAGAGCTCCAGATC--TCT-----TTGGCTCAAAGTACTTA-----------------TATTATGTC---------TGTGTTTTGCAAGTTTCATGACTCATT-----CTCCCTAAAAAG----------GGAGATGAATTTCTAACAAAAGGATAGAAAAGTACTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   270826 206 +   357190 TTGAGCCACTTGACAAGTT---ACATGAAAC--TTCAAATTGACAAAATAATTGAGT---------TTCATGCCG-CTTGTTGTCAAAGGCAC-GTGT----------Gtgggaaaaagg---aaaa------------gtgcCTCGCCGAGCTTAGCCGGTCGCCAATATGTAATTGCCTC---------------------------TGTTTCACT-----TAAGTGAGAAAGGAGAAAGAatggaaatgaaga---aaaggaATAGGAAAAGAGTACTA
i caeJap4.Scaffold17990 I 546 I 52

a score=-3333.000000
s ce10.chrX              2927779 57 + 17718866 CTATACCTCA---------TTGGAGCTACATATTGGAAATGGAAGATGGAGAAAATAGA---AAACCCG
s cb4.chrX              17675823 33 - 21540570 TT----TTTA---------TGGG-----------GGCGACGAATAGGG-----TGGGGA---AA----T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   407725 47 -  1794024 GT----TTTATGGGCACCTTGGG-----------GAGAGAGAATAGTGCCCAATAGAGA---AA----T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    414086 44 +   484378 GT----TTTA---------TGGG--------TACTGAAGAGAATACTAGGCGATATGGAGAGAA----T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574938 40 -  4147112 GT----TTTA---------TGGG---------GTTGAAGGGAATACTGGCCAATAGAGA---AA----T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   271032 52 +   357190 I

a score=306420.000000
s ce10.chrX              2927836 562 + 17718866  
s cb4.chrX              17675856 596 - 21540570  
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig15   407772 562 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 227
s caeSp111.Scaffold582    414130 569 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3574978 550 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   271084 580 +   357190  
i caeJap4.Scaffold17990 I 52 C 0

a score=-2571.000000
s ce10.chrX              2928398 9 + 17718866 CTTGCAGAA-
s cb4.chrX              17676469 9 - 21540570 attaaagAT-
i cb4.chrX              I 17 C 0
s caeSp111.Scaffold582    414699 8 +   484378 -tgtGTGGG-
i caeSp111.Scaffold582  C 0 I 147
s caePb3.Scfld02_0       3575528 8 -  4147112 -TTTGtggg-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   271664 9 +   357190 -taTATAAAA
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig15   408334 227 -  1794024 I

a score=91.000000
s ce10.chrX              2928407 1 + 17718866 T
s caeJap4.Scaffold17990   271673 1 +   357190 T
i caeJap4.Scaffold17990 C 0 I 34
e caePb3.Scfld02_0       3575536 0 -  4147112 C
e cb4.chrX              17676478 0 - 21540570 C
e caeSp111.Scaffold582    414707 147 +   484378 I
e caeRem4.Crem_Contig15   408334 227 -  1794024 I

a score=-892.000000
s ce10.chrX              2928408 29 + 17718866 TTGTTTCAATAAAGGG---GAAGGGAAAACTT-
s cb4.chrX              17676478 26 - 21540570 --ATT---ATAGAATGTTTGAGGGGATGAAT--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3575536 22 -  4147112 --------aaaaaagg---gagagaaagaaTTT
i caePb3.Scfld02_0      C 0 I 4710
e caeJap4.Scaffold17990   271674 34 +   357190 I
e caeSp111.Scaffold582    414707 147 +   484378 I
e caeRem4.Crem_Contig15   408334 227 -  1794024 I

a score=-5200.000000
s ce10.chrX              2928437 1221 + 17718866  
s cb4.chrX              17676504  941 - 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3575558 4710 -  4147112 I
e caeJap4.Scaffold17990   271674   34 +   357190 I
e caeSp111.Scaffold582    414707  147 +   484378 I
e caeRem4.Crem_Contig15   408334  227 -  1794024 I

a score=21817.000000
s ce10.chrX              2929658 56 + 17718866 AACATGGCCAGAT--GTTTGACTACATTAACAACCTAGTTAATAT--ATTTGTTACATAT
s cb4.chrX              17677445 53 - 21540570 AATATAGCCAGGTGCGTGTGAATACATTACCATTAGAGCTAATATACATATGC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   408561 48 -  1794024 AATGTAGCCAGGT--GTGTGAATACATTA-TGTTAGAGTTAATAT--ATATGC-------
i caeRem4.Crem_Contig15 I 227 C 0
s caeSp111.Scaffold582    414854 50 +   484378 AATATATCCAGGT--GTTTGAATACATTA-TGTTAGAGTTAATAT--CTATGT-----GC
i caeSp111.Scaffold582  I 147 C 0
s caePb3.Scfld02_0       3580268 48 -  4147112 AATATATCCAGGT--GTTTGAATACATTA-TGTTAGAGTTAATAT--ATATGT-------
i caePb3.Scfld02_0      I 4710 C 0
e caeJap4.Scaffold17990   271674 34 +   357190 I

a score=80463.000000
s ce10.chrX              2929714 209 + 17718866 ATAACATATTTAACAAGCACATCACAGCAACCGATATATTTATTTG------CCATTGGTGCT--CA---CCTTGGACACCTCGCACCCCGCACACC-----GAAGC---------------------GGGTTTATCAAAGAAGAA--TCCCGGC--GGGAGTCGGTT-CGGTGTATCCTAATCCGCTTCCGACAG-------CC-----GACGGTCAAGTGATGTTGCGTAATTAGTC--CGACT--CTTTTGG-TGTGTTTTTTTT
s cb4.chrX              17677498 252 - 21540570 ACAACATGTTTAACCGAAACATTATTGA-----AGATGTTTATTCGGCTACTGGTCAGTTACTACCACCGCCTAAGACAC--CTCACCACGGACCCTCTCACCACACACGGACCCCCGGAAAAAAGCGGGGTTCATCAAAAAGGAA--TCCCGGC--GGGGG-CAGTGACGGTGTATCCTAATCCGCTTCCGACAACCCCCACCCG-AAAGACGGTCAAGTGACGTTGCGTAATTAGTCTTCGACT--CTTTTGA-TGAGCtgttcct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   408609 225 -  1794024 ATAACATGTTTGA-AGAAACATCACCGAAAGCGAGATGTTTATTCGGCTACTCTTCTGGTTATACCA---CCTTGGGCACCTCTCACCACACAACATCTCAGCAAGC---------------------GGGCTCATCAAAAAAGAA--TCCCGGC--GGGGG-CCGCT-CGGTGTATCTTAATCCGCTTCCGACCA-------CCA-AGAGACGGTCAAGTGTCGTTGCGTAATTAGTC-CCGACT--CTTTTGA-AGAATCTTTTCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    414904 217 +   484378 ATAACATGGTT------AACATCATAGAAACCGAGATGTTTATTCGTATATCCCACTGGTTCTACCA---CCTAAGACACCTCTCACCAGGCCCTCCTCT--CAAGC---------------------GGgttcatcaaaaaaagaggtcCGGGC--GGAAG-CGGCT-CGGTGTATCCTAATCCTCTCCCGACAT-------TC--AGAGACGGTCAAGTGTGATTGCGTAATTAGAC--CGACTTTCTTTTGGGTGAATCTT----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580316 196 -  4147112 ATAACAGA---------AACATCATAAGAAGCGAGATGTTTATTCGGCCACCCCACTGGTTCTGCCA---CCTTGAACACCCCTCAATAGACACCCTTC------GG---------------------CGGTTTATCATGAAAGAA--TCCCGACCGGGAGG-CGGCT-CGGTGTATCCTAATCCGCTTCCGACAC--------------GACGGTCAAGTGTGGTTGCGTAATTAGTC--CGACTTGCTTTTGG-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   271708 196 +   357190 ATAATGTAATGTACAGAAACATTATGA------AGGTGTTTATTTGGCTTCTGTGTT--------CA---CAGCCGACGACTCACAGCCCAG----------AAGGC---------------------GGcgttaaaaaaagagaa--tcaCGGC---GGGG-TAGCT-CAATGTATCTTAATCCGCTTCCGACGA-------CCATAGACTCGGTCAAGTGAGGTTGCGTAAGTAACC---------TTCCTGC-TATGTATTTATT
i caeJap4.Scaffold17990 I 34 I 797

a score=-16799.000000
s ce10.chrX              2929923 171 + 17718866 TTGTAATTACAAAAGCTTCGACATCCAAAAAAAATAgcaaaactgatgtttttttaattttcaaaaaatcatatagaatttagattttttttttgaattttttactatgatatttgtaaatgtggtgccatatgcgtgttttacaacaatttATTCTTTTAATTTGCTC-CA
s cb4.chrX              17677750  41 - 21540570 tc------------------------------------------------------tttttcaatgAA---------------------------------------------------------------------------CACACGTTCTATTTTGT-TTCTGCCA-TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   408834  40 -  1794024 TT------------------------------------------------------ATTTT--ATTAT---------------------------------------------------------------------------TCCACGTTCTATTCCATGTTTTGTTC-TA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415121  43 +   484378 TT------------------------------------------------------CGTTTCGAGGAA---------------------------------------------------------------------------CAACTGTTATTGTTACTAATTTGTTCAAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580512  44 -  4147112 --------------------------------------------------------TATTTCAACGAACCGT-----------------------------------------------------------------------CAACTGTTTTCGTTTCTAATGTGTTC-AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   271904 797 +   357190 I

a score=111871.000000
s ce10.chrX              2930094 161 + 17718866 TGAGCAAA-------------AAATATGGTGCTAAACATAGGGTT-ATGCGGGAGG--TTAAGGGATG--CAGGAAACAATTCACACCTGGCAAT-----AAAGAGACACAATAAATTAAGCTGTTGAATATGCCAGCTGTGTGTTAGTGAAAAAACATATAATTAGAACTATTCATTTGTGTT
s cb4.chrX              17677791 159 - 21540570 TGAGCAATGG-----------AACTATGAAACTAAATATGGGGTTAATGC--------GGGACAACCGCACCGAAAACAATTCACACCTGGCAATAAAGGAAAGGTGCACAATAAACGAAGCTGTTGGTGTTGACAGATGTCTTC------AAAAACATATAATTAAAATGTTCGTATTGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   408874 172 -  1794024 AATGCATTGAATGGGAAAACTAAATATGGAGTTAAATATGGGGTT-ATGCGGGAGACAGGGAGAACTGCCCCAAAAACAATTCACACCTGGCAAT-----AAAGGTGCACAATAAATGAAGCTGTTGGACTTGACAGATGTCTTT------AAAAACATACAATTAAAACAGTCGTATTGTGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415164 157 +   484378 GGAGCGGAG------------AAGAATGGATTTAAATATGGGGT--GTGCGGTAGA--CATAGAACTGCCCCAAAAACAATTCACACCTGGCAAT-----AAAGGTGCACAATAAATGAAGCTGTTGGACCTGACAGATGTTTGC------AAAAACATACAATTAAAACTGTCGTATTGTGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580556 157 -  4147112 TAAGCGAAA------------AAATATGGAACTAAACATGGGGT--ATGCGGGAGA--CATAGAACTGACCCAAAAACAATTCACACCTGGCAAT-----AAAGGTGCACAATAAATGAAGCTGTTGGGCGTGACAGATGTCTCT------AAAAACATATAATTAATACTGTCGTattgtttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   272701 154 +   357190 TGAACAGA-------------AAATATG---TTAAATATGGGGGT-ATGCGGTAGA--AAGCGTTGTGTGGGGGAAACGATTCACACCTGGCAAT-----AAAGGTGCACAATAAATGAAGCTGTTGGTTTTGACAGATGTTTGT------AAAAACATATAATTAAAACTGTACTCTGGTTTT
i caeJap4.Scaffold17990 I 797 I 275

a score=-4255.000000
s ce10.chrX              2930255 6 + 17718866 G----TTAGT
s cb4.chrX              17677950 9 - 21540570 TATTGTTGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409046 5 -  1794024 T----TGGG-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415321 6 +   484378 G----TTCTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580713 6 -  4147112 g----ttgtt
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17990   272855 275 +   357190 I

a score=-4973.000000
s ce10.chrX              2930261 18 + 17718866 -AACAAACCTCACCGCAGA---------------
s cb4.chrX              17677959 30 - 21540570 -TACTAATA---GTACCTGTGGTTTTCATGCGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409051 31 -  1794024 -AACAAATACACATGCCTAT--CCTTTACTCGGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415327 16 +   484378 CTACAAATC---GCAAATA---------------
i caeSp111.Scaffold582  C 0 I 12
e caePb3.Scfld02_0       3580719 31 -  4147112 I
e caeJap4.Scaffold17990   272855 275 +   357190 I

a score=-12868.000000
s ce10.chrX              2930279 32 + 17718866 AAGATTGAATTGAAAAT---GG----------ATTTA-----AACAAGAA------------
s cb4.chrX              17677989 39 - 21540570 ----ATGGGATGAGCAGCTCGG----------GGTTT-----TATAAAAATACAAG----GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409082 55 -  1794024 ----AAGGGAAGGTGAGGTGTG---AAATTTTGGTTTAGGAATCTGAAGGTTCAAGTGAcga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415355 45 +   484378 AATTCTGAGATGagcataaaaaatgaaacgatttttt-----ttcaagat------------
i caeSp111.Scaffold582  I 12 I 10
s caePb3.Scfld02_0       3580750 32 -  4147112 -AATCTGAAATGGGAATTGGGG------------TTT-----TACAAGAA------------
i caePb3.Scfld02_0      I 31 I 67
e caeJap4.Scaffold17990   272855 275 +   357190 I

a score=-3635.000000
s ce10.chrX              2930311 23 + 17718866 -----------AAAGTACTT---GAACA-TATTCTTCT
s cb4.chrX              17678028 10 - 21540570 -----------AAggt-------gaaaa----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409137 12 -  1794024 -----------aaagtac-----aaaaa----------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415410 29 +   484378 aaaatacagGGAAGGTATATCCAGACAAT---------
i caeSp111.Scaffold582  I 10 C 0
e caePb3.Scfld02_0       3580782 67 -  4147112 I
e caeJap4.Scaffold17990   272855 275 +   357190 I

a score=14681.000000
s ce10.chrX              2930334 62 + 17718866 GTAAGCTT---TCACAGATCGAAAAGAAAAGAACAGAGCGTGATAGGATTGAAAAAAAAGAAGCT
s cb4.chrX              17678038 51 - 21540570 gtgaaaataaatCTCA-----AACAATG----AGCGAACGTGATGAGATC-----CGaaaaagct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409149 51 -  1794024 gtgagttt---tctcagattgaaaaaga----gaCGAACGTGAT--GATC-----CAAAGAAGCT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415439 53 +   484378 GGAAATCT---TTAcagtttgaaaagaa----acgaaacgtGATGAGATC-----CAAAGAAGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580849 54 -  4147112 GTAAATCC---TTTCagttcgaaaagaa---gaaagaacgTGATGAGATC-----CAAAGAAGCC
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold17990   272855 275 +   357190 I

a score=47552.000000
s ce10.chrX              2930396 57 + 17718866 AACTGCAAA---------CAAGAA---AGCAAAATCGGGTGAATGACAATGTTTGTTCCACTTCCACTT
s cb4.chrX              17678089 67 - 21540570 acaagaaaaatgagacactaaaaaa--cgaaaaatcggGTGAATGACAATGTTTGTTCCACATCCACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409200 56 -  1794024 AActgcaaa---------caaaaaa--cg--aaatcggGTGAATGACAATGTTTGTTCCACTTCCACTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    415492 57 +   484378 TACTGcaaa---------caaaaa---cgaaaaatcggGTGAATGACAATGTTTGTTCCACTTCCACTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580903 58 -  4147112 AACtgcaaa---------caaaaag--tgaaaaatcggGTGAATGACAATGTTTGTTCCACTTCCACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   273130 57 +   357190 aattgaaaa---------taatcgATTTGAAAAA---GGTGGCTGACAATGTTTGTTCCACTTTCTCTT
i caeJap4.Scaffold17990 I 275 I 555

a score=19557.000000
s ce10.chrX              2930453 65 + 17718866 ATGACTGACTTCTTTCTGTCTGTACACTTAAATGGGCC------------ACAAAATAGGA--------TGGTGTGAAGTAAAGT
s cb4.chrX              17678156 79 - 21540570 ATGACT---TTGTCTCCTTCTGTACACTCGAATGGGACAA-GCAgacag-acgaaa-aaaaaaatggtgaagCGTGAAGTAAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409256 74 -  1794024 ATGActga-cttttttcttttgtacaCTCAAATGGGCCACTACAAGCAG-ACAAAA-AGGA--------AAGCGTGAAGTTATGT
i caeRem4.Crem_Contig15 C 0 I 380
s caeSp111.Scaffold582    415549 65 +   484378 AGTACT---GTCTCCTCTTCTGTTCACTCG--------ACTACTAGcagaacaaaa-agtg--------aagtgTGAAGTGAAGT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3580961 73 -  4147112 AGAACT---GACTTCCTTTTCGTACACTCAAATGGGCCACTACAagcataacaaaa-aatg--------aagcgTGAAGTAAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   273187 555 +   357190 I

a score=711.000000
s ce10.chrX              2930518 3 + 17718866 ACG
s cb4.chrX              17678235 3 - 21540570 TCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    415614 3 +   484378 TCG
i caeSp111.Scaffold582  C 0 I 443
s caePb3.Scfld02_0       3581034 3 -  4147112 TTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   273187 555 +   357190 I
e caeRem4.Crem_Contig15   409330 380 -  1794024 I

a score=-1780.000000
s ce10.chrX              2930521 1 + 17718866 --A
s cb4.chrX              17678238 1 - 21540570 -A-
i cb4.chrX              C 0 I 998
s caePb3.Scfld02_0       3581037 1 -  4147112 T--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   273187 555 +   357190 I
e caeSp111.Scaffold582    415617 443 +   484378 I
e caeRem4.Crem_Contig15   409330 380 -  1794024 I

a score=260.000000
s ce10.chrX              2930522 4 + 17718866 CGGT
s caePb3.Scfld02_0       3581038 4 -  4147112 CGAT
i caePb3.Scfld02_0      C 0 I 700
e caeJap4.Scaffold17990   273187 555 +   357190 I
e cb4.chrX              17678239 998 - 21540570 I
e caeSp111.Scaffold582    415617 443 +   484378 I
e caeRem4.Crem_Contig15   409330 380 -  1794024 I

a score=0.000000
s ce10.chrX              2930526 1439 + 17718866  
e caePb3.Scfld02_0       3581042  700 -  4147112 I
e caeJap4.Scaffold17990   273187  555 +   357190 I
e cb4.chrX              17678239  998 - 21540570 I
e caeSp111.Scaffold582    415617  443 +   484378 I
e caeRem4.Crem_Contig15   409330  380 -  1794024 I

a score=878.000000
s ce10.chrX              2931965 37 + 17718866 ATTTTTCCAAACACCCCACTGCAAAGTACAGGGAAAA
s caeRem4.Crem_Contig15   409710 37 -  1794024 ATTCTTCCATTTACCTAAAAAGAAACTGCAAAGAACA
i caeRem4.Crem_Contig15 I 380 I 1
e caePb3.Scfld02_0       3581042 700 -  4147112 I
e caeJap4.Scaffold17990   273187 555 +   357190 I
e cb4.chrX              17678239 998 - 21540570 I
e caeSp111.Scaffold582    415617 443 +   484378 I

a score=3533.000000
s ce10.chrX              2932002 14 + 17718866 TTTTTTATCAGTTT
s cb4.chrX              17679237 14 - 21540570 TTTTTAATCAGTTC
i cb4.chrX              I 998 C 0
s caeRem4.Crem_Contig15   409748 14 -  1794024 TTTCAGATTCGTTT
i caeRem4.Crem_Contig15 I 1 C 0
s caePb3.Scfld02_0       3581742 14 -  4147112 TCTATTATCAGTTT
i caePb3.Scfld02_0      I 700 C 0
e caeJap4.Scaffold17990   273187 555 +   357190 I
e caeSp111.Scaffold582    415617 443 +   484378 I

a score=-12318.000000
s ce10.chrX              2932016 42 + 17718866 CACTCT---TTTTTTTT--GCAATTGT----------TTTTCAATAGCTTTTCCG---TG
s cb4.chrX              17679251 41 - 21540570 CT-------TCGCACCTC-CCGAAAGTGT--------TTTTCGCT---CACACCGCACCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409762 51 -  1794024 CTATTA---TCACTTTTCTCCAAGTGTGTTagacctcttttttct---tttttca---tg
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3581756 42 -  4147112 ATGACAACTTtactttt--ccaaatgt----------tttttgcC---CTTAAGG---TG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   273742 30 +   357190 ----------cactttttttttattgt----------tttccgGC---TCGAG-------
i caeJap4.Scaffold17990 I 555 C 0
e caeSp111.Scaffold582    415617 443 +   484378 I

a score=89216.000000
s ce10.chrX              2932058 198 + 17718866 GTGTGAAAATTACCGCCTTTTCATGTTTCCCAATG--TGTTTAA-----------------GGAATGGAA--------------GAGGTATGGCGTGATCAGTCATTGATAATTTCAACTTGGCATTTATCAGTGTGTGGACATTGTCCCCGCTGGTATATGTACGTAGGTCGCAAGTGCATCACGCC-----TCTTCTCTTTTCTTGACAGGGCTCGCT----------------------------------GAGCAC------AATAGACTCC
s cb4.chrX              17679292 234 - 21540570 GCGTGAAAAATGACGCCTTTTTAATGTT-TCTCTC--AcctcaaattctttttttttgctctaacAGATAGTGAGAGAGAGAAGGAGGTATGGCGTGATCAGTCACTGATAGTTACAGCATGACATTTATCAGTCGATGGACATTGTCCCCATTGGTATATGTACGTAGGTCGCAAGTGCATTGTGCCgcgctttttttcttttgct------cctctttt------------ttggaa---------------aagcaA------AATAGACTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   409813 207 -  1794024 gCGTGAAAAATAACGcctttttatgttt-tctgtg--tGCTTAA-----------------TAACCGACA--------------AAAGAATGGCGTGATCATTCATTGATAGTTACAGCATGGCATTTATCAGTGCGTGGACATTGTCCCCATTGGTATATGTACGTAGGTCGCAAGTGCATCATacctc---ctttttctttttct------tctctttt-----------atttCAA---------------GAGCAAGACCATAATATACtag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    416060 204 +   484378 GTGTGAAAACTAGCACTTTACCCCT----TTAACG--TGCACAG-----------------TCGCTGACA-------------GAAAATATGGCGTGATCAGGCAATGATAGTCTCGGAATGGACATTATCAGTACGTGTACATTGTCCCCATTGGTATATGTACGTAGATCGCAAGTGCATAACG-------CCtgctcttcttcc------cctttctT--TCCGAATTCCCAGAAA---------------GAGCAG------AGTAgactcc
i caeSp111.Scaffold582  I 443 C 0
s caePb3.Scfld02_0       3581798 192 -  4147112 GTGTGAAAATAAACGCATTTTCCGTTTC-TTAATG--TGCTCAA-----------------TAAGTGAGG-------------GAAGGTATGGCGTGATCAGTCACTGATACTCTCAGCACAGACATTATCAGTTCATGGACATTGTCCCC------ATACGTATGTAGGTCGCAAGTGCAT-----------CTTTCACTTCCTTC------ACTCTCT-------AAATGACAAAAA---------------GAGCAG------AATAGACTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   273772 228 +   357190 GTGTGAAAAACGTCTTCTTTCAAAG----ACAATGTATGTTTAA-----------------GGATAGCAA---------AAAGGAGTGAATGGCGTGATCACTCATTGATAATTTCAGCTTGAATATTATCAGTAAATGGACATTGTCCCCGC-ATTATATGTAGGTAGGTCGCAAGTGCATTAAAAC-----CTTTTCTTCCTCCC------TCTTTTCTAGCTCCACCTTCCAGAAAGTGTGATGTAATGATGAGCAT------AATAGACTCC
i caeJap4.Scaffold17990 C 0 I 732

a score=11256.000000
s ce10.chrX              2932256 46 + 17718866 AACCG---TGCA-------ATTGTTTCAGCGTTTT-AGGTTTTACTAGGTCAAAGTC
s cb4.chrX              17679526 56 - 21540570 ACTTTACCTTGACATTAT-GCAGGCTCAGCGAATTGAACATTAAGTAGGTCAaagtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   410020 53 -  1794024 atttt---ttggtttagt-GTTGTTTCAGCACTTTGAAGTTTTATAAGGTCAAAGTC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    416264 51 +   484378 --ttt---tttgttttct-gctGTTTCAGCGTTTAGAACTCTTCCAAGGTCGAAGTC
i caeSp111.Scaffold582  C 0 I 695
s caePb3.Scfld02_0       3581990 54 -  4147112 GATAT---TCGGTTTTTTGGCTGTTTCAgcattccaaaatttcaaaaggtcGAAGTC
i caePb3.Scfld02_0      C 0 I 496
e caeJap4.Scaffold17990   274000 732 +   357190 I

a score=-364.000000
s ce10.chrX              2932302 10 + 17718866 TGGCTGTTTC---
s cb4.chrX              17679582 10 - 21540570 ---tttttttctc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   410073  7 -  1794024 ---CCGTTTC---
i caeRem4.Crem_Contig15 C 0 I 439
e caePb3.Scfld02_0       3582044 496 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I

a score=-548.000000
s ce10.chrX              2932312 272 + 17718866 ---CAAAATAAAATATATTTCAAAGTCAGCTTCACCCGTCGATTTCTCGCTTTCGTTTTTTTTTATCGAACTGTCACGTTTTCGTGTAGGTTTTTGC----ACAATTATTGAATTTTGCGCTCAAAAAATTTGAAATTTCAATTTAGGTATATTTATCAACATTTCCCAAGTGATAACAATTGTTGTCTA-GCCCTACTA---------GCTTATTTTGCAGTATTATTTCCTATAATATATTTTTTAAAGCATATCATATTTTCCCAAATGTTGCGACACTTGAAAGA
s cb4.chrX              17679592 224 - 21540570 tgacagattgagccatgttt--------------------gattttttaattttctaattttttaatggAAGGCCTACTTGTAaaccgggccttcgcgggcacTACCACTG--TTTTTCTCtagaa----ttaatatttt--------tgtacCAAGTAAC---TTAGAGGTGATTGAACTTAACGGCCAAGCCCGACCGTCGGCCAGTGCCTACTTTG----------------------TTTTTTAATTCATTTCGTCTGT-----AATGTTGCT-CATTGGAAAGa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3582044 496 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410080 439 -  1794024 I

a score=-774.000000
s ce10.chrX              2932584 15 + 17718866 CATAATACGCCATCC
s cb4.chrX              17679816  5 - 21540570 tacga----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3582540 15 -  4147112 CAGAATGCTCTTTCC
i caePb3.Scfld02_0      I 496 C 0
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410080 439 -  1794024 I

a score=-1231.000000
s ce10.chrX              2932599 104 + 17718866 GCTTTCGCTGATTTGTAAATTTTG-TACATGGCTGTCTATCAATT----CCTGCATTAGGCTCTTATTC-TCGTTTTTC--TTGGTGCGTATT--GATAGCGAT-------AAAACGGCTG
s cb4.chrX              17679821  88 - 21540570 ----------attttcaaat-----tacatgattttgtagtactc--------------gttgaGATTAATCATATCTCGTTTAGTTAGgtcaaaaatgtgaattctaaaaaaacta----
i cb4.chrX              C 0 I 109
s caeRem4.Crem_Contig15   410519  98 -  1794024 GTTTCTACTGACTTGTAGATACACCTGCACAACTGCCTATCATTCTTTTCCTGTATTAGGCTCTTATTCACCATTTCTTGGTT------------GATATCGAT-------AAACTG----
i caeRem4.Crem_Contig15 I 439 C 0
s caePb3.Scfld02_0       3582555 105 -  4147112 ----CCATT-GGTTATAGGTTTTCTAGCACGCCTGTCTATCAATTCGCTTTGGTATTAGGCTCTGATTAACTCTTTTTC--TTGGCGCGTCTC--GATATCAAT-------AAATTCACTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I

a score=2333.000000
s ce10.chrX              2932703 36 + 17718866 ATAGTCGAGTGATACCCCTTCTTT---ACTTTTTTTGTT---------
s caeRem4.Crem_Contig15   410617 38 -  1794024 ATAATCAAGTGAAACCTCCTCTCT-CAACTCGTCTTGCT---------
i caeRem4.Crem_Contig15 C 0 I 49
s caePb3.Scfld02_0       3582660 48 -  4147112 ATAATAAAATGAAACCACCTCCCTCCACCTCCACTTACTTTCCTTCTT
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold17990   274000 732 +   357190 I
e cb4.chrX              17679909 109 - 21540570 I
e caeSp111.Scaffold582    416315 695 +   484378 I

a score=0.000000
s ce10.chrX              2932739 69 + 17718866 GGCTCTTCATCTATTCGCCCATCTCCACAAGTTTTTTTTTCAAATAGATATTTTGCATGTATTGTGAAC
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e cb4.chrX              17679909 109 - 21540570 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655 49 -  1794024 I

a score=-522.000000
s ce10.chrX              2932808 308 + 17718866 TGTCAAATTAATAACAGATTTTTAAAAA--AAATTCTTGTATCCTGTCACGTGTA---------------TAACATCCTGTCATTT-----------ttaaaggaggtgtaatggctgtggttattttggtatagtcctacgatatgctgaaatacaggaattttataatgaaagttctcaaaaaatt---ttcaaaaattttttatggcggttcaaaattt--caaaaaaaattaaaggctcaatttcagctaaaatctccagttttggcaacttttccgtgccg------cagcagcttgaaaatgacttttttgaattatcgtcttttattgcttatttcggtt
s cb4.chrX              17680018 293 - 21540570 TATCAAATTGATAAGAGCGTTCTAACAGCTgtattcatcatttttgttaTGTATAATAACCCTGGTATACGAACGCCCCTCCATTTGTTCAATGATTCTAACAGAATCATAATGACCTTCCTTAT---------------CAATAGGCT-------------CTTATA------GTTGGCATAGGATGGTACTAGAAAATTTTGCGTGGCCTGATGATACCTgacacagaaaatgagag-------------tGACAT----GGGATTGATAACCCTTTCATGTAGATTCACCAACTGCCT-ATCATTCTTTTCCTGTATTA--GGCTCTTATtcactctttttctt
i cb4.chrX              I 109 I 93
e caePb3.Scfld02_0       3582708  80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655  49 -  1794024 I

a score=0.000000
s ce10.chrX              2933116 96 + 17718866 gttgggctcctgtttgttgtaggataaagtagattttaagccgataggtaaccaaaaattacaaaagatccgcattaaaaaatttaaaaaattaaa
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e cb4.chrX              17680311 93 - 21540570 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655 49 -  1794024 I

a score=863.000000
s ce10.chrX              2933212 42 + 17718866 caattttttttgagcaattttattacaaattttgttcacttt
s cb4.chrX              17680404 38 - 21540570 AAATTTCCTT----CTCTCctatcaccaatttttttcttttc
i cb4.chrX              I 93 I 33
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655 49 -  1794024 I

a score=0.000000
s ce10.chrX              2933254 49 + 17718866 agcacattacaaatctataggttcaaaatatccagaaaccgttgatcct
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e cb4.chrX              17680442 33 - 21540570 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655 49 -  1794024 I

a score=151.000000
s ce10.chrX              2933303 3 + 17718866 tct
s cb4.chrX              17680475 3 - 21540570 ttt
i cb4.chrX              I 33 C 0
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410655 49 -  1794024 I

a score=1495.000000
s ce10.chrX              2933306 23 + 17718866 tcaaTTTGAAAGGCAAATTTTAT
s cb4.chrX              17680478 15 - 21540570 tcaatt--------gaattttGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   410704 23 -  1794024 tcaatttgtttgaaaaatgttgc
i caeRem4.Crem_Contig15 I 49 C 0
e caePb3.Scfld02_0       3582708 80 -  4147112 I
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I

a score=-4096.000000
s ce10.chrX              2933329 15 + 17718866 --TATTTAAAACCCAAG
s cb4.chrX              17680493  5 - 21540570 TG-ATT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   410727  6 -  1794024 aatttt-----------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3582788 13 -  4147112 --tattCAAA--CTAAT
i caePb3.Scfld02_0      I 80 C 0
e caeJap4.Scaffold17990   274000 732 +   357190 I
e caeSp111.Scaffold582    416315 695 +   484378 I

a score=273.000000
s ce10.chrX              2933344 1 + 17718866 T
s caePb3.Scfld02_0       3582801 1 -  4147112 T
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17990   274732 1 +   357190 t
i caeJap4.Scaffold17990 I 732 C 0
e cb4.chrX              17680498 0 - 21540570 C
e caeSp111.Scaffold582    416315 695 +   484378 I
e caeRem4.Crem_Contig15   410733 0 -  1794024 C

a score=191710.000000
s ce10.chrX              2933345 382 + 17718866 TTTAGGTAACAAAAACGCATGGCTTTTTCTGTAAGAGACGTCTATGCAGGCAGCTCCGTGCTGCTCACGGGAGGTACTGGGTTTTTGGGAAAGGTGATTGTTGAGAAGTTGTTATGGACTATTGATGACATTCAAAACATCTATTTGATGATAAGAACAAGAAAAGGGAAGAATCCGCAAGAAAGATTGTCAGGTCTTCTTCATGTAAGTAT--------TTTGATT------ATATTTGGAATTTTA-----TTTAATAGTTTTTAGGATCCCCTTTTCAATCGCATTCGCCAAGAGAAACCAGAAGCATTTGACAAATTGAAAGCAATCGGTGGAGATATGATGGTGGAAAATCTAGGAATGGATCCTGAAGATGTGATGCTCATCCGAGACAATGTGA
s cb4.chrX              17680498 376 - 21540570 CATAGGTAA---CAACGCATGGCTTTCCGCGTGAAAGACGTATATGTGGGTAGTTCCGTGTTGCTCACCGGAGCCACTGGATTCTTGGGCAAGGTCATCGTCGAGAAGCTGTTATGGACTATCGATGAGATTGACAACATCTATTTGATGATTCGAACGCGGAAGGGGAAGAATGCGAATGAAAGGTTGGCAGGACTACTTCATGTGagtttg-------tttgatttttcgaaagtttgaagGTGTA-----TTT----------AGGACCCACTCTTCAATAGAATCCGTCAAGAAAAGCCACACGCATTTGACAAGCTCATTGCAGTTGGAGGAGATATGATGGTAGAGAACTTAGGAATGGATCCAGAGGATTTGAAACAAATATCTGAGAATGTAA
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig15   410733 383 -  1794024 tttAGGTAA---CAACGAATGGCTTTCCAAGTGAAAGACGTATATGCGGGTAGCTCCGTGTTGCTCACCGGAGGAACCggatttttgggaaaagtaATTGTGGAGAAACTGTTATGGACCATTGATGAGATCGAAAATATCTATTTGATGATTCGAACAAGAAAGGGAAAGAATCCAAATGAGAGATTGGCTGGACTTCTccatgtgagt----------ttttaaatcGCAAATGATAAAAATATTA-----CTTTTTAAATATCAGGATCCTCTTTTCAATCGAATCCGTCAAATTAAACCAGATGCATTCAACAAACTTGTTGCAGTTGGCGGAGATATGATGGTCGAAAACCTTGGAATGGACCCAGAAGATATGAAACTCATCAGAGATAATGTAA
i caeRem4.Crem_Contig15 C 0 I 36
s caeSp111.Scaffold582    417010 381 +   484378 ttcaggtAAAAACGAATGGCGACTTTCCGCGTGAAAGATGTCTATGATGGGAACTGCGTGTTCCTCACTGGAGGTACTGGCTTCCTGGGAAAGGTTATGATTGAGAAGATGTTGTGGGCTTTGGATGGCATTGACAAAATCTATCTGCTGATCCGAGCCAGGAAAGGAAGTGAGCCTGCTGAACGTTTGAGAGGACTCATTCATGTTAGTAAA-----GCTGTGAAGCCACTCAGAATATCTGTATGA-----TTT----------AGGACCCTCTTTTCGCTCGTCTCCATTCAGAGAAGCCGGACGTGTTCAATAAACTAGTCGCTGTAAATGGTGACATGATGTTGGAAAACTTTGGATTCAGTGAGGAGGATCACCAAGAAATTATAAACAAGGTAA
i caeSp111.Scaffold582  I 695 I 33
s caePb3.Scfld02_0       3582806 376 -  4147112 TCCAGGTAA----TATTCATGACTTTCCGCGTGAAAGATGCTTATGAGGGCAGTCATATACTGCTCACTGGTGGTACAGGATTCCTGGGAAAAGCTATGACAGAGAAGCTGTTATGGCAACTTCCAGGTATTGAAAGAATCTATTTGATGATCCGCCATCGCAAAGGGAAGGAGCCAAAAGATCGTTTGGCAGGACTCATTCATGTAAG-----------TTTTATGCTAAAGAAATGGTTTTCATGACGAGTTTT----------AGGATCCGATTTTCACGCGTCTCCATTCAGAATGCCCTGAAGTTTTCGACAAATTAACGGTTGTTCCTGGAGATATGATGAAGGATGATTTAGGAATGAGTGACGAAGACCTAGACACTATCATCAATAAGGTAA
i caePb3.Scfld02_0      I 4 I 35
s caeJap4.Scaffold17990   274733 383 +   357190 ttccggtAA--CAGACGCATGGCTTTTCATGTAAGAGACGCCTATGCTGGCAGCTCGCTGCTGCTCACTGGTGCCACTGGGTTTCTAGGAAAAGTGATTGTGGAGAAGCTGCTCTGGACAATCGATGATATTCAATGCGTCTATCTTATGATTAGAACCAGGAAAGGAAAAAATGCCAGCGAAAGACTTGCGGGACTTCTTCATGTAagataaaattaatttttttttttcaaattttacaattacAA-----TTC----------AGGATCCACTTTTCACACGTCTTCGTGAAGAAAAGCCAGACGCGTTTAAAAAACTTTGTCCCATTAGTGGAGACATGATGGTTGAAAATCTAGGAATGAGTCCAGAAGACTTGGAAACAATTCGGAATAATGTG-
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              2933727 36 + 17718866 GGGAGTACAATTCTCAATTTTTCCAACTTTTTAATA
e caePb3.Scfld02_0       3583182 35 -  4147112 I
e caeJap4.Scaffold17990   275116  0 +   357190 C
e cb4.chrX              17680874 90 - 21540570 I
e caeSp111.Scaffold582    417391 33 +   484378 I
e caeRem4.Crem_Contig15   411116 36 -  1794024 I

a score=107588.000000
s ce10.chrX              2933763 135 + 17718866 TTCAGGTCAACGTAGTGATCCATAGCGCGGCGACTGTCAAGTTCGACGAGCATCTAAGAGCAGCAGTCACCATGAATGTCATTGGAACCAAACGAATCATTGATCTCTGTCATCAAATCAAAGATCTCAAAGTAA
s cb4.chrX              17680964 135 - 21540570 TTCAGGTCAATGTGGTTATTCACTCAGCGGCTACTGTCAAATTCGACGAGCACCTCCGCGCGGCTGTCACCATGAATGTCATCGGAACCAAACGTATTATCGATCTCTGCCACCAAATCAAAGATCTCAAGGTAT
i cb4.chrX              I 90 I 1
s caeRem4.Crem_Contig15   411152 135 -  1794024 ttcaggtcAATGTGGTTATCCATAGTGCTGCCACTGTCAAATTTGACGAGCATCTCCGAGCAGCTGTAACCATGAATGTCATCGGAACCAAAAGAATTATTGATCTTTGCCACCAAATCAAGGATCTCAAAGTAA
i caeRem4.Crem_Contig15 I 36 I 30
s caeSp111.Scaffold582    417424 134 +   484378 TTCAGGTGAGTGTTGTAATCCACAGTGCTGCTACTGTGAAGTTCGACGATCACATCCGTACGGCCGTCACTATGAATTTGATTGGAACCAAAAGAATCATTGCACTTTGTCATGAAATTAAGGCTCTCAAGGTA-
i caeSp111.Scaffold582  I 33 C 0
s caePb3.Scfld02_0       3583217 134 -  4147112 tttaggtCAGCATTGTTATTCATAGTGCTGCTACAGTTAGATTTGATGATCATCTGAAAGAAGCAGTCACTATGAACGTCATCGGTACTACAAGAATTGTTGCTCTCTGCCATAAGATCAAGAACCTAAAAGTA-
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold17990   275116 127 +   357190 --------AATGTCGTCATTCACAGTGCAGCGACTGTTAAATTCGACGAGCACTTAAGAGCCGCCGTTACCATGAATGTTATTGGAACCAAACGAATCATTGACTTGTGTCATCAAATTAAGAATCTCAAGGTAg
i caeJap4.Scaffold17990 C 0 I 3

a score=-3975.000000
s ce10.chrX              2933898 28 + 17718866 CAGAGAAAACAACGTGTCTCAGAAAAAT
s cb4.chrX              17681100 28 - 21540570 CAAAGATCTCAAGGGTTTTAAGGATTAA
i cb4.chrX              I 1 I 8
s caeSp111.Scaffold582    417558 22 +   484378 ------TTTCTAGGCTGCTGTTGCTCAT
i caeSp111.Scaffold582  C 0 I 6
s caeJap4.Scaffold17990   275246 19 +   357190 aaaaaaaagaaaagtgaat---------
i caeJap4.Scaffold17990 I 3 C 0
e caePb3.Scfld02_0       3583351  0 -  4147112 C
e caeRem4.Crem_Contig15   411287 30 -  1794024 I

a score=73458.000000
s ce10.chrX              2933926 192 + 17718866 ------TGTAT--------------TTTTAAGGTATTGGTGCATGTGTCAACTGCATATGCAAACTGCGACAGGTTTGAAACAACGGAAAAAGTGAGCGTGAAAAATTGAACATTGTAGAA-TATCAACTAAATTTCTGGAAATTTACAGATTTACAAGTCACCAATGGCTCCACAAAAACTTGTGGACGCTCTTTCGTGGATGGATGACGAA
s cb4.chrX              17681136 179 - 21540570 ------tcggg--------------tttttagGTATTGGTACATGTGTCAACTGCTTATGCAAACTGCGATCGCGTCGAGACAGTTGAAAAAGTGAG----CTTAAGTTTATATTGGAGAG-AAAcaatca---------agattttcagatctatAAATCTCCAATGGCTCCACAAAAATTGGTGGACGCGTTGACTTGGATGGATGATGAG
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig15   411317 180 -  1794024 ------TTTAT--------------TTTTGAGGTATTAGTGCATGTTTCAACTGCATACGCCAATTGCGACCGATTTGAAACTGTTGAAAGAGTTAG----TGCAGACGTAGGCAgttcagaaaacaaatt---------ttaattaCAGATTTACAAGTCCCCAATTCCACCACAGAAACTGGTCGATGCTATCTCGTGGATGGACGATGAG
i caeRem4.Crem_Contig15 I 30 C 0
s caeSp111.Scaffold582    417586 178 +   484378 ------TTCTG--------------AATTAAGGTTCTGGTACACGTTTCCACTGCATATGCCAACTGTGATCGTGTGGAAACTACCGAGAAGGTATGGTACTACAGAT---GATCTTTGAA-CTATAACT-----------GATTTATAGATTTACAAGTCGCCAGTGCCACCAGAGAAGTTGATTGATGCTTTGAGTTGGATGGATGATGAT
i caeSp111.Scaffold582  I 6 C 0
s caePb3.Scfld02_0       3583351 166 -  4147112 -----------------------------------CTGGCTCATGTTTCCACCGCTTATGCAAACTGTGATCGTTTCGAAACTATTGAGAGAGTaagatatttttgtttgagatTTCATAT-CAACTTCT-----------GGATTTCAGATATACAAGTCTCCGattccaccaaaaaaactgattgaaactGTGTCATGGATGGATGATGAA
i caePb3.Scfld02_0      C 0 I 56
s caeJap4.Scaffold17990   275265 209 +   357190 catatttttattgaCACAAGAAACATCTTTAGGTGCTAGTTCATGTGTCGACAGCGTATGCCAATTGCGACCGTTTCGAAACCACAGAAAAAGTGAGGAAGAATACAT---ACTTTTACCA-AAACAAAACTCATTAAAACGTTTTCCAGATTTACCGGTCACCGATTCCTCCACAAAAACTGGTTGATGCGTTGGCATGGATGGACGATGAG
i caeJap4.Scaffold17990 C 0 C 0

a score=5591.000000
s ce10.chrX              2934118 12 + 17718866 ACATTGACTAAA
s cb4.chrX              17681315 12 - 21540570 ACTCTGACTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   411497 12 -  1794024 ACACTCACGAag
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    417764 12 +   484378 ACTCTTACCAAG
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   275474 12 +   357190 ACTTTAACTAAA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3583517 56 -  4147112 I

a score=1146.000000
s ce10.chrX              2934130 2 + 17718866 GT
s cb4.chrX              17681327 2 - 21540570 GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   411509 2 -  1794024 gt
i caeRem4.Crem_Contig15 C 0 I 19
s caeSp111.Scaffold582    417776 2 +   484378 GT
i caeSp111.Scaffold582  C 0 I 28
e caePb3.Scfld02_0       3583517 56 -  4147112 I
e caeJap4.Scaffold17990   275486 0 +   357190 C

a score=182.000000
s ce10.chrX              2934132 2 + 17718866 AA
s cb4.chrX              17681329 2 - 21540570 AA
i cb4.chrX              C 0 I 36
e caePb3.Scfld02_0       3583517 56 -  4147112 I
e caeJap4.Scaffold17990   275486 0 +   357190 C
e caeSp111.Scaffold582    417778 28 +   484378 I
e caeRem4.Crem_Contig15   411511 19 -  1794024 I

a score=0.000000
s ce10.chrX              2934134 1128 + 17718866  
e caePb3.Scfld02_0       3583517   56 -  4147112 I
e caeJap4.Scaffold17990   275486    0 +   357190 C
e cb4.chrX              17681331   36 - 21540570 I
e caeSp111.Scaffold582    417778   28 +   484378 I
e caeRem4.Crem_Contig15   411511   19 -  1794024 I

a score=456.000000
s ce10.chrX              2935262 12 + 17718866 GTTACCCGATAT
s caeRem4.Crem_Contig15   411530 12 -  1794024 GTTATCTTATCT
i caeRem4.Crem_Contig15 I 19 C 0
e caePb3.Scfld02_0       3583517 56 -  4147112 I
e caeJap4.Scaffold17990   275486  0 +   357190 C
e cb4.chrX              17681331 36 - 21540570 I
e caeSp111.Scaffold582    417778 28 +   484378 I

a score=-273.000000
s ce10.chrX              2935274 7 + 17718866 TTAACAT-
s caeRem4.Crem_Contig15   411542 7 -  1794024 -TAAAAAA
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    417806 7 +   484378 TTAGAAT-
i caeSp111.Scaffold582  I 28 C 0
e caePb3.Scfld02_0       3583517 56 -  4147112 I
e caeJap4.Scaffold17990   275486 0 +   357190 C
e cb4.chrX              17681331 36 - 21540570 I

a score=3172.000000
s ce10.chrX              2935281 6 + 17718866 TTTCAG
s cb4.chrX              17681367 6 - 21540570 TTCCAG
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig15   411550 6 -  1794024 GTCTAG
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    417813 6 +   484378 GTTCAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3583573 6 -  4147112 tttcag
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold17990   275486 0 +   357190 C

a score=319417.000000
s ce10.chrX              2935287 465 + 17718866  
s cb4.chrX              17681373 454 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   411556 501 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    417819 496 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3583579 501 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   275486 537 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=1065.000000
s ce10.chrX              2935752 4 + 17718866 AGGT---
s caeRem4.Crem_Contig15   412057 4 -  1794024 AGGT---
i caeRem4.Crem_Contig15 C 0 I 6
s caeSp111.Scaffold582    418315 4 +   484378 AGGT---
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3584080 4 -  4147112 AAGT---
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   276023 7 +   357190 aagtatt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17681827 0 - 21540570 C

a score=91.000000
s ce10.chrX              2935756 1 + 17718866 T
s caeJap4.Scaffold17990   276030 1 +   357190 t
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3584084 2 -  4147112 I
e cb4.chrX              17681827 0 - 21540570 C
e caeSp111.Scaffold582    418319 1 +   484378 I
e caeRem4.Crem_Contig15   412061 6 -  1794024 I

a score=145.000000
s ce10.chrX              2935757 2 + 17718866 AG
s caeSp111.Scaffold582    418320 2 +   484378 AG
i caeSp111.Scaffold582  I 1 I 22
s caeJap4.Scaffold17990   276031 2 +   357190 at
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3584084 2 -  4147112 I
e cb4.chrX              17681827 0 - 21540570 C
e caeRem4.Crem_Contig15   412061 6 -  1794024 I

a score=743.000000
s ce10.chrX              2935759 13 + 17718866 TCAGAGTTTTATA
s caeJap4.Scaffold17990   276033 13 +   357190 tcaaaagtttata
i caeJap4.Scaffold17990 C 0 I 2
e caePb3.Scfld02_0       3584084  2 -  4147112 I
e cb4.chrX              17681827  0 - 21540570 C
e caeSp111.Scaffold582    418322 22 +   484378 I
e caeRem4.Crem_Contig15   412061  6 -  1794024 I

a score=0.000000
s ce10.chrX              2935772 487 + 17718866 TAATAATATCTCCAttaaaggaggagtactggttataagtatttagcttaaatagacttaaactggttcaaaacgtcttcataatgagacttcacaaaaaaatttccaaaaatttttatggcggGTAAATAATAATAATATCAAAATAGAACCAAATTTTGCTAAAATATAAAAATTCGCAGATTTCTTTCATTAGATGAACTACCAAAATATGCAttaaaggaggactaacggtttggacgattttgaaAAAAAAAAAGGCCCAAAATAGACGGCAAACATTTTTTAAACGGCAttcaagctactaccacgtagaaaagttaacgaaattttagaatttagcaaaattagtcttttttttccaacattttgagccttcataaaactatttgtcaaaaattttttttgagaaatctcattttgaaatttggtcaattttggccagttttagtcAATTTTAACTAAATACCCACAAACTCTACTCCCC
e caePb3.Scfld02_0       3584084   2 -  4147112 I
e caeJap4.Scaffold17990   276046   2 +   357190 I
e cb4.chrX              17681827   0 - 21540570 C
e caeSp111.Scaffold582    418322  22 +   484378 I
e caeRem4.Crem_Contig15   412061   6 -  1794024 I

a score=310.000000
s ce10.chrX              2936259 7 + 17718866 TTTTAAA
s caeRem4.Crem_Contig15   412067 7 -  1794024 TTCTAAC
i caeRem4.Crem_Contig15 I 6 C 0
e caePb3.Scfld02_0       3584084 2 -  4147112 I
e caeJap4.Scaffold17990   276046 2 +   357190 I
e cb4.chrX              17681827 0 - 21540570 C
e caeSp111.Scaffold582    418322 22 +   484378 I

a score=853.000000
s ce10.chrX              2936266 13 + 17718866 TAGTA-CTCTAATG
s caeRem4.Crem_Contig15   412074 13 -  1794024 -TGTGGCTCTAACT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3584086 14 -  4147112 TAGTATCTCTgatg
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17990   276046  2 +   357190 I
e cb4.chrX              17681827  0 - 21540570 C
e caeSp111.Scaffold582    418322 22 +   484378 I

a score=-1111.000000
s ce10.chrX              2936279 8 + 17718866 TTTTTTTT----
s caeRem4.Crem_Contig15   412087 8 -  1794024 TAGATtat----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3584100 8 -  4147112 ataatttt----
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   276048 8 +   357190 ----ttttcaca
i caeJap4.Scaffold17990 I 2 C 0
e cb4.chrX              17681827 0 - 21540570 C
e caeSp111.Scaffold582    418322 22 +   484378 I

a score=1685.000000
s ce10.chrX              2936287 12 + 17718866 AAATATATTTTC-
s caeRem4.Crem_Contig15   412095 10 -  1794024 --ataatatttt-
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    418344 12 +   484378 AAATAGTATTTC-
i caeSp111.Scaffold582  I 22 C 0
s caePb3.Scfld02_0       3584111 12 -  4147112 aaatgcaatttc-
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   276056 12 +   357190 -aaaattattttc
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17681827  0 - 21540570 C

a score=373152.000000
s ce10.chrX              2936299  881 + 17718866  
s cb4.chrX              17681827 1223 - 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig15   412106  888 -  1794024  
i caeRem4.Crem_Contig15 I 1 I 535
s caeSp111.Scaffold582    418356  870 +   484378  
i caeSp111.Scaffold582  C 0 I 560
s caePb3.Scfld02_0       3584123  884 -  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   276068  896 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-126.000000
s ce10.chrX              2937180 31 + 17718866 ACGCACTCT--CTCATCAACAATAACTTTTTTT
s cb4.chrX              17683052 29 - 21540570 GATCGATTT--CCAAACAACCCT--CCTCTTTA
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       3585009 31 -  4147112 GATCAATTTGAGTAAaccacact--tttttttc
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   276964 26 +   357190 -----tttt--tttaagagtaattatttttttt
i caeJap4.Scaffold17990 C 0 I 1017
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=-221.000000
s ce10.chrX              2937211 9 + 17718866 CATTGTTAT
s cb4.chrX              17683081 9 - 21540570 CGTtattat
i cb4.chrX              C 0 I 1037
s caePb3.Scfld02_0       3585040 8 -  4147112 gatttttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=192.000000
s ce10.chrX              2937220 12 + 17718866 TCTCCGCttaaa
s caePb3.Scfld02_0       3585048 12 -  4147112 ctcgcACTTTAA
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=0.000000
s ce10.chrX              2937232 349 + 17718866 ggaggagtaacggttctgggtgttttgaacgaataaataaaatatatgacacttctcgtattttttccaaaaattttttatggcggttcaaaattttgactcaaatttagcgaaaatctctaattttGGCCTGAAATTAAACTTTTGAATTAACGAAAAATGTGACACGGAATAGAAGCCAAACATTttttatggaaattttgaagcacgataaaaaatatttaaaacatttttgaactcattgcggaatttgttcaaggagcacattttgggtatatacgtttcaaaaaaaaaacccataaccgttactcctcttttaaAATTTACACATGCCTATTTCCGACAACGC
e caePb3.Scfld02_0       3585060  37 -  4147112 I
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=3711.000000
s ce10.chrX              2937581 367 + 17718866 TTTATATCTTTTTTTTTAATACTGCAATTTTTTTCACCAAATCTTCCATCTTC---AATCACCTCCAAGTTTGTTTTCTACTTGTTATGAGCGAAAGACCAGTTTTTTTCTCGTTATTCATTTTATGTTTGACAATAAATAATGGTCAGTTCCACTTTAAATATTTATTTTTCCTATCAGTTTTGTTTCATGGCTAACCA--CAATCACAGTGGAGACTAGTAAACATTCGCAAATAGAAAAAAAAAACAACA-TCGGTGGCTC----TTCTCGTTTTCT-----CGTC------AATG---GTTAGTAGGAAAAGATGAGAG-------TACTTTT-----GCTCGATGTGAGTGCGTGATATTTTAAAATGCGTGTTATTTTTAGAATTCATATCTTTTGA
s caePb3.Scfld02_0       3585097 344 -  4147112 tttatatcttccaattt-------caatttcttttccattacttcccattttctcagtttactccaaaacatattttctgt----------------agcaacttgtttttc---atctATCCCCAAATTATCAATAAATCATG-------------------------------ATCAGTTGTGATTCGCGAATTAGAAGTCAATC-CGCGAGAAACATTTTCgcattaacaaaaaaaacgaaaaaaaaacagccgGCAGCTCACTTGTCCCGTTTTCTGCTTCCGTCTCTTTTAATgcaagaaagaagagatggaTGAGAGGAAGAACTACTTCTCAGTGACTCGATGTGAGTACGTGATGTTTTAtaacttgttgt-tttttatgaatcataggtttcga
i caePb3.Scfld02_0      I 37 I 340
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=0.000000
s ce10.chrX              2937948 775 + 17718866  
e caePb3.Scfld02_0       3585441 340 -  4147112 I
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I
e caeSp111.Scaffold582    419226 560 +   484378 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=376.000000
s ce10.chrX              2938723 27 + 17718866 CAAACATCCAAAAACAAAGTTTGTAAA
s caeSp111.Scaffold582    419786 25 +   484378 CGATCATTAAAAAgtaaa--ttattat
i caeSp111.Scaffold582  I 560 C 0
e caePb3.Scfld02_0       3585441 340 -  4147112 I
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I
e caeRem4.Crem_Contig15   412994 535 -  1794024 I

a score=-285.000000
s ce10.chrX              2938750 4 + 17718866 --TGTT
s caeRem4.Crem_Contig15   413529 4 -  1794024 --tgtt
i caeRem4.Crem_Contig15 I 535 C 0
s caeSp111.Scaffold582    419811 4 +   484378 tttg--
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3585441 340 -  4147112 I
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17683090 1037 - 21540570 I

a score=-703.000000
s ce10.chrX              2938754 15 + 17718866 TTTGTGAGTGTTTTC-
s cb4.chrX              17684127 15 - 21540570 tttgtctattttttt-
i cb4.chrX              I 1037 C 0
s caeRem4.Crem_Contig15   413533 15 -  1794024 tttctctctccaatt-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    419815 15 +   484378 -ttttttattatttgc
i caeSp111.Scaffold582  C 0 I 5
e caePb3.Scfld02_0       3585441 340 -  4147112 I
e caeJap4.Scaffold17990   276990 1017 +   357190 I

a score=45708.000000
s ce10.chrX              2938769 126 + 17718866 -----CAATATCAATTGAAAAGTT---TTGAACAACAACTTGCCACTTGGCCGTTTCGCACTGTTGGTTATGAAT-CCC-AAAAACCTGAGGGCAG--------------TGTTTACTTTTTCAACTTACTGTTTACTCGCATTAACAAT
s cb4.chrX              17684142 134 - 21540570 cggtttgaaA-CGGTTGAAAAATTCCACCGACCAAC-TACAAACACCT-ATCGTTTCGCACTGTTGATTTGAAAT-CCA-----------CGGCAgtttgtgtgtatgtgtgtttGC-GATTCAACTGACTGTTTACCCGCATTAGTAGT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig15   413548 128 -  1794024 --atttgaaa-cgattgaaaaaat-tattgatcaACAAACACACACAT-ACCGTTTCGCACTGCTGGTTTTGAAT-CCAAAAGAACCG--AGGCAGT-------------TGTTTGC-TATTCAACTGACTGTTTACCCGCATTAACAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    419835 116 +   484378 -----TGAAA-TAGGTGAAAACTT--ATCGATCATCCAACACAC-------CGTTTCGCACTGTTGGTTtcgaat-cca-aaaaacct--gGGCAA--------------TGTTTGC-TATTCAACTGACTGTTTACCCGCATTAACAAC
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3585781 117 -  4147112 -----CAATA-CAGTTGAAAACTT--ATAGACCAACAACCACAC-------CGTTTCGCACGGTTGGTtttgaatccca-aaaaaccT--GGGCAG--------------TGTTTGC-TATTCAACTGACTGTTTACCCGCATTAACAAC
i caePb3.Scfld02_0      I 340 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I

a score=617.000000
s ce10.chrX              2938895 45 + 17718866 CAACATTGTATTAGTTCCCTGCGTAGTCTCTTTTTTCAAATTTTA
s caeRem4.Crem_Contig15   413676 24 -  1794024 ---------------------AGTCGTTGTTCTATCCAACTTCCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    419951 17 +   484378 ---------------------AGTCGTTGTTCTTCTCA-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3585898 17 -  4147112 ---------------------AGTCGTTGTTCTATCCA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17684276 25 - 21540570 I

a score=-2533.000000
s ce10.chrX              2938940 114 + 17718866 Aggagtagagtcagtgaggaaatttctttaacacacgctacagtgaccaaatgttatggtaattttttaaagtttcaattgattttttgattttttgaaaattggaaaaaaaat
s caeSp111.Scaffold582    419968  41 +   484378 ----------------------------------TTGCCTCAG-AACcga------------------aagttttc--ttctttttctgtttttct------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3585915  37 -  4147112 ----------------------------------ATGCCGTAG-----GA------------------Aaagtttc--ttctccttctgttttttt------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17684276  25 - 21540570 I
e caeRem4.Crem_Contig15   413700   0 -  1794024 C

a score=-5016.000000
s ce10.chrX              2939054 62 + 17718866 tagaaaatttttttgaaactttcttttatgatatttgtccattgtggtaccgtaggcgtgtt
s caeRem4.Crem_Contig15   413700 46 -  1794024 TAGAAAAccttttc----cttccttctgt----ttttcttctgccatttctatc--------
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    420009 27 +   484378 ----------tgcc----atttcttc---------ttctcattaaatt----tc--------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3585952 36 -  4147112 ---------atgcc----ccttcttc-gt----ttttctctttctattaacatc--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I
e cb4.chrX              17684276 25 - 21540570 I

a score=8177.000000
s ce10.chrX              2939116 122 + 17718866 ------------tttttttt-----------aaatttttccactagctctattcATGTTTTA-------------AATTGATTTATTTTTGATAACTAGACA-CAAATGACATGACGG-ATAAGAAAT------------CAAATCTTTGTGCTCTCTCCCCGG-CCCTT-ACG
s cb4.chrX              17684301 141 - 21540570 TTTCCTTCtgtttttctctctatctTAATTTCTCTTtat---caaaattgataaatgttttttccTCATGCATGTCATTGATCAA------ATCACTACACA-CAGATTACATAGGGG-----------CCCCCGAGGGCACAATCTCTGTCCC-----------CTCTC-GCT
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig15   413747 131 -  1794024 ttcccttttattttttcatc-----------acgttttt---AGAAATTGATAAGTGTTTTC---------------TTGATTGA------ATCAC--CACA-CAAATTACACGACGG-ATAAGAAACTCTGTCATGGGCCAAATCTTTGTGCT---TCTCAGAGCTCTC-ACG
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    420036 114 +   484378 ------------ttctcttc-----------aaaacttt--aTATTATTGATAAGTATTTCC---------------TTGATTGA------ATCACTACATAACACG----ATGAAGGGATGAGAAACTAC-----AAGACAAATCTTTGTGCT----CTCAGA-CTCTCAGCA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3585988 117 -  4147112 ------------ttcttccc-----------atgttttttgaagaaattgataagTGTTTTC---------------TTGATTGA------ATCACTACATAGAAAATGACATGAAGGGATAAGAAACTCT-----GAG-CAAATCTTTGTGCT----CTCAGA---CTCAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   276990 1017 +   357190 I

a score=91128.000000
s ce10.chrX              2939238 184 + 17718866 TTTTCTTCCTTCTCAATCCA-AAATGCGTTTTGGCACGTCGAAAACA-TTGAGCAGTTG----GAGAAACGAGGGGCAAGGCAGAAGGGCC-GCGCTTT--CGTTTTTTTTGCG----TTGTC--TTCT-CT--CGATCTC------TTTC----TCCGTGTTACGCATATTCTCT-----CGCAC-TTTGCTTCTGGCTGCTTAGTTTTTTT-----CCCTT
s cb4.chrX              17684442 190 - 21540570 TTTTCCGATGTCT--ATCCGAAAATGCGTTTTGGCACGTCGAAAACATTTGAGCAGTTGGGGAAGAAAAGAGGAGGCA--AGAAGAGGACC-GcgcttttcgtttttttttttgcgttttgtCGTTTCTCCT--CGATCCCAGTCTTCCTC----TCTGTGTTACGC-TATTCTCTCTATACGCac-tttg----------cttctttttttt----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   413878 183 -  1794024 TTTTCCTCC-TCT--ATCCG-AAATGCGTTTTGGCACGTCGAAAACA-TTGAGCAGTTG----AGAAAAAGGGGCACA--GCAGAAGGGCC-Gcgcttt--agtttttttttcg----ttgtcGTCTCT-CT--CGATC--------CCTC----TCTGCGTTACGCATATTCTCT-----CGCAC-TTTGCttcg-acttcttcttttttttctttttattt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    420150 174 +   484378 TTTTTCGTCCTCT--ATCCG-AAATGCGTTTTGGCACGTCGAAAACA-TTGAGCAGTTG----GGAAA---GAAGGCA-GGCAGAAGGGCC-Gcgcttt--cg-ttttttttcg----ttgtc--tTCT-CT--GGATC--------CCTC----TCTGTGTTACGCATATTTTCT-----CGCACTTTTGCTTCT-GCTCcttcgttttc------cttttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3586105 182 -  4147112 TTCTCCATCCTCC--ATCCA-AAATGCGTTTTGGCACGTCGAAAACA-TTGAGCAGTTG----GGAAAAGGGGAGGAA-GGCAGAAGGGCCGGcgcttt--cg--tttttttcg----ttgCCATCTCT-CT--CGATC--------CCTC----TCTGCTTCACGCATATTCTCT-----CGCac-tttgcttct-tctttttctttttcgt--tttttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   278007 178 +   357190 ttttttATTATCACAATCTA-AAATGCGTTTTGGCACGTCGAAAACA-TTGAGCAGTAG--------GACGGAAAGCA----GAGGGGGCC-ACgctct--cg-ttttttttcg----tcctCGTTTCT-TTTCCGAGCT-------TCTCTGCTTCTGCTTTTGGCGAATTCTCT-----CCTGC-TATACCGCT-Gcgttttcttttgctt----tt----
i caeJap4.Scaffold17990 I 1017 I 1439

a score=22692.000000
s ce10.chrX              2939422 242 + 17718866 GCTGAAGGCTGAAAAAGTGAAGAAGAAGAAAACACACCAATCATTCATTCAATCCAGTCGATTTGATAG---------GAAAATGTAATTCACAATTTTGGTTTTCATGTT-TTG--TTTCTGTTGTATAAATACATTCAGTTGTCTGGGT-CCCCTGCGTCAAGATCAAAAGTGCATCCCC-----------------------CCTCTAGGGGCTT--------CTTTC-GTGT--ATTGCATCATGTGTA-CTTGCCATAGCAT----------ATTTCAAAGTCGAAA--C--CTTTTAT
s cb4.chrX              17684632 199 - 21540570 ------------------gccaaagAATAGAA-----------------------AGTCGATTTGatagggagagagagaaaatgcaattcttgtttttg----------tctCGGAT-----------------------------GGGTACCTC-------GGACCAAAAGTTCAAACCctccatttatttttttttccctcaTCCCTCGAGGCCT-GCCATAGATGTCAGTGTGAATTGCATCATTTCCC-AAGGACATCgtcgatttcaa---atttcaaa--ccaaa--t---------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig15   414061 226 -  1794024 cgcAGTGgctgaaa---cgaaaaaaaatagaagaaa-----aatgcaTTAGATGCAGTCGATTTGATAG---------GAAAATGTaattcatgtttttg----------t-ttgGATTCCTCTTGTCTTC----------------GGGT-CCTC-------AGACCAATAGTTCATgtcttccctctttt-------------tctctagaGACCCAGCCATCTATGTC-GTGTGAATTGCATCATACCAA-AATGGCAAggccaaattcaaaatatttcaaaacctaAA--C---------
i caeRem4.Crem_Contig15 C 0 I 20
s caeSp111.Scaffold582    420324 215 +   484378 cttgaagtCT----------------aaaaaaaGCG-----ATTG---TGGATTCACTCGATTTGATAg---------agaaatttatttcttgtttttg----------t-ttggtTTCCTTGCGTCATCTTATGTCTTATGTCTT-GGT-CCCC-------AGACCAAAAGTTCATTTCTTTTAGTTC---------------TCCCTAGAGGCCG-AGCCTTTATGTC-GTGTGAATTGCATCATACCAGAAAGGGCAAGGccga---------atttcaaaa-cgaaa--tga-------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3586287 231 -  4147112 cttgacgactgaaa---tggaaaaagaagaaaagca-----aaCGCATTGAATTCAACCGATTTGATAG---------GAAAAtgttattcttgtttt------------t-ttggtttccccTTGTCTCTTTGAGTCTGATGTCCTGGGT-CCCT-------AGTCCAAAAGTCCACTTCTCCTCATTC---------------TCCCCAAAGGCCT-ACCCTTCATGTC-GTGTGAATTGCATCATACCAG-AAGGGCAAGGCCga---------atttcgaaa-ccaaaaccat-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I

a score=-4723.000000
s ce10.chrX              2939664 15 + 17718866 ---------TTTTGGCTTTTTTCT
s cb4.chrX              17684841 15 - 21540570 ---------tcgcgcCTCTCTTCC
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold582    420539 14 +   484378 cGAAAACGCTGGAA----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3586518 13 -  4147112 tgaaaac-ctaaaa----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e caeRem4.Crem_Contig15   414287 20 -  1794024 I

a score=25778.000000
s ce10.chrX              2939679 80 + 17718866 ACTTTTCTTTTTTCCCATGCGTTCGTCACACTCATTATTTACTCTGCATCTTTTCTCTCTCCATTTCAATCACTATCACT
s cb4.chrX              17684856 66 - 21540570 --------------ACATGCGTTCCATCTACTCATTATTTACTCTTTCTCTCTCCGTCTCCTTTTCCAATCGCTCTCGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   414307 80 -  1794024 ACGCTTCTTTTTCCACATGCGTTCGCTCGTCTCATTATTTACACTTTCTCTCTGACCTCTCTTTTCCAATCACTCTCTAT
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    420553 76 +   484378 ACGTGTCGTTTTTCACATGCGTTCC----TTTCAATATttactctttctctctattttctctttttcaatcacaATCTCT
i caeSp111.Scaffold582  C 0 I 89
s caePb3.Scfld02_0       3586531 73 -  4147112 atgcATC-TTTCTCCCATGTGTTCC----GCTCATTATTTACACTGTTTGTCTGTTGTCTCCCCTTCAATCACTATCT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I

a score=-588.000000
s ce10.chrX              2939759 26 + 17718866 -TCTCACTTGGCATCATTCATTGTTTT
s cb4.chrX              17684922 19 - 21540570 -ACTTCCTTC-------TTGTTGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   414387 18 -  1794024 -CATCTCTAC-------TCggttttt-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3586604 25 -  4147112 TCTTCTCTAC--ATCATTTGTTGTGTT
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e caeSp111.Scaffold582    420629 89 +   484378 I

a score=191.000000
s ce10.chrX              2939785 2 + 17718866 CT
s cb4.chrX              17684941 2 - 21540570 CT
i cb4.chrX              C 0 I 61
e caePb3.Scfld02_0       3586629 41 -  4147112 I
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e caeSp111.Scaffold582    420629 89 +   484378 I
e caeRem4.Crem_Contig15   414405 0 -  1794024 C

a score=584.000000
s ce10.chrX              2939787 33 + 17718866 TATACCAAAGGAACTAAATAAAACGTTTGTTTG
s caeRem4.Crem_Contig15   414405 30 -  1794024 tgtgtaaa---aattcAACACAACATGTATTTG
i caeRem4.Crem_Contig15 C 0 I 16
e caePb3.Scfld02_0       3586629 41 -  4147112 I
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e cb4.chrX              17684943 61 - 21540570 I
e caeSp111.Scaffold582    420629 89 +   484378 I

a score=0.000000
s ce10.chrX              2939820 765 + 17718866  
e caePb3.Scfld02_0       3586629  41 -  4147112 I
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e cb4.chrX              17684943  61 - 21540570 I
e caeSp111.Scaffold582    420629  89 +   484378 I
e caeRem4.Crem_Contig15   414435  16 -  1794024 I

a score=620.000000
s ce10.chrX              2940585 24 + 17718866 ATTAAAAGTTGACCTTCCACAGGG
s caeRem4.Crem_Contig15   414451 24 -  1794024 ATCATAATTTGACCTCCTGTGTAA
i caeRem4.Crem_Contig15 I 16 C 0
e caePb3.Scfld02_0       3586629 41 -  4147112 I
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e cb4.chrX              17684943 61 - 21540570 I
e caeSp111.Scaffold582    420629 89 +   484378 I

a score=-953.000000
s ce10.chrX              2940609 9 + 17718866 TAATATGAC--
s caeRem4.Crem_Contig15   414475 9 -  1794024 --GAAAGAAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3586670 9 -  4147112 TAGTAGGTC--
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e cb4.chrX              17684943 61 - 21540570 I
e caeSp111.Scaffold582    420629 89 +   484378 I

a score=-480.000000
s ce10.chrX              2940618 2 + 17718866 -CG
s cb4.chrX              17685004 2 - 21540570 -CG
i cb4.chrX              I 61 C 0
s caeRem4.Crem_Contig15   414484 2 -  1794024 -CG
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3586679 2 -  4147112 AC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I
e caeSp111.Scaffold582    420629 89 +   484378 I

a score=-12759.000000
s ce10.chrX              2940620 245 + 17718866 CGCGCAGTTGTTTGTTTCTGTGTTTT---CCTTGTTGTATCTGCGTCGCGCACTTTCTAACCACAAT-----------GGTCCCTGCC-ACACTGTATTACGCGC-----------------------------ATT--------------------------CATTGTCCGCATCGATTAATCAGTTTTTGCTTGTCAACAT-----------------------TTTTCTCTTGCAGTTCT---CAGATTTATCCTTTTCTTCTC-------AAA---------ATTTTTTC-------ATTCTTC----TCATCCCATTT---TTCTCA---TCCTTCGTGTTAAATACTATTGTCATAAATTACAGAATT
s cb4.chrX              17685006 281 - 21540570 CGCGCAGTTGTTTGTTTCTTTGAACACACTCTTgatgtgtctgcgtctcgtaCTCTCTCG----------------------CCACAC-ACAGTCTCGTTGGTCC-----------------------------GCTGCGGtcattattggttttttttttccaatc-acCGCATTCGtttc-----tcttgtttttgaactt--tctgtGTTCGCTCTggtcatttcatttttttcagtttg---atgatctgatcat----tttcattttccgta---------tATTTCCC-------ACTCTTT----ACCTCTAGTTttcggtctaa---aaattttccgt--aTAAAATTCCct-gaattccagaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   414486 299 -  1794024 CGCGCAGTTGTTTGTTTCTATGGACA---TCTTCATATGTCTGCGTTTTGTTCTCTCTCGCGTAGTGTCTTC------TGGACCACACTACACCGTATTTGCCGC-----------------------------ATTGGAGAGGCAAATGGTCCATT------GATCGATCGTACGGGtcat-----ttgtgttttttatcgTAGTCtgcattttctctctctctctcttttttttttattggtAAACAGCGTGGCAATCTAATttcattt---gca---------tttttcttgaattgaaTTCTTT---GATGTCCATTGTT--ATCTTActtgaattctc-------aaaattttct--aatttcagataa
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    420718 214 +   484378 CGCGCAATTGTTTGTTTCTTTGGACA---C-CAGGTGTGTCTGCGTCTCGCACTCTCTCCCCCGTTTCTTGT------GGTCCCAGAC-ACACTGTATTCGTCTC-----------------------------ATTG----------TGTGCGAGT------GACC--CCGCATTGATTTA--------------------------------------------TCCTTCCTCTCGTTTTC---ATGGAATACGTCCTTTACTcc-------aac---------cttttttt-------ctttttt----atgtc---------TTCTCA---AC--------------AAATTGTTG--GTTTGCAGAACA
i caeSp111.Scaffold582  I 89 C 0
s caePb3.Scfld02_0       3586681 289 -  4147112 CGCGCAGttgtttgtttctttgaaCA---CATAgttgtgtctgcgtctcacactctcccccctttttcttcttggaaGGGTCCCGGCC-TCACTGTATTCTTCCCCTTATTACTCGCATACGCAAGTCCAATCGATTG----------GGTGCCATT------GACCTTCCTTTctgattta-----tttcattttctgac-------------------------tcatttttcttggcttc---aagaaaaaagttcacaatttC--TT---AACAAGAATtggttcttctt-------catctttcaacacgtt---------tgttca---actttttc-----acaatatttttt--gttt-cagtaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   278185 1439 +   357190 I

a score=394454.000000
s ce10.chrX              2940865 546 + 17718866  
s cb4.chrX              17685287 453 - 21540570  
i cb4.chrX              C 0 I 94
s caeRem4.Crem_Contig15   414785 460 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 49
s caeSp111.Scaffold582    420932 451 +   484378  
i caeSp111.Scaffold582  C 0 I 14
s caePb3.Scfld02_0       3586970 453 -  4147112  
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17990   279624 465 +   357190  
i caeJap4.Scaffold17990 I 1439 C 0

a score=258.000000
s ce10.chrX              2941411 3 + 17718866 GAG
s cb4.chrX              17685834 3 - 21540570 GAC
i cb4.chrX              I 94 C 0
s caePb3.Scfld02_0       3587443 3 -  4147112 GGT
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold17990   280089 3 +   357190 ggg
i caeJap4.Scaffold17990 C 0 I 766
e caeSp111.Scaffold582    421383 14 +   484378 I
e caeRem4.Crem_Contig15   415245 49 -  1794024 I

a score=-7941.000000
s ce10.chrX              2941414 48 + 17718866 AAAATAATTAGCCCAATAAAA--------CAAATTTTTGAAAGT----TTTGAAAGTTAA
s cb4.chrX              17685837 60 - 21540570 AATACAGCATACCACATGAGAGAGCTTGACGAATTCTACAACATAATATTTCAAATCGAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    421397 13 +   484378 --------------------------------ATTCT-----------TTCCCAag----
i caeSp111.Scaffold582  I 14 C 0
s caePb3.Scfld02_0       3587446 28 -  4147112 AATA------------------GGCT---CGAACTTT-----------GACGGAAGAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   280092 766 +   357190 I
e caeRem4.Crem_Contig15   415245 49 -  1794024 I

a score=-701.000000
s ce10.chrX              2941462 8 + 17718866 AATTAAAT
s cb4.chrX              17685897 8 - 21540570 TTATCAGC
i cb4.chrX              C 0 I 48
s caeSp111.Scaffold582    421410 1 +   484378 -------t
i caeSp111.Scaffold582  C 0 I 10
s caePb3.Scfld02_0       3587474 8 -  4147112 ACGTCGAT
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17990   280858 8 +   357190 aattaaat
i caeJap4.Scaffold17990 I 766 I 5
e caeRem4.Crem_Contig15   415245 49 -  1794024 I

a score=704851.000000
s ce10.chrX              2941470 744 + 17718866  
s cb4.chrX              17685953 746 - 21540570  
i cb4.chrX              I 48 I 39
s caeRem4.Crem_Contig15   415294 742 -  1794024  
i caeRem4.Crem_Contig15 I 49 I 31
s caeSp111.Scaffold582    421421 739 +   484378  
i caeSp111.Scaffold582  I 10 I 33
s caePb3.Scfld02_0       3587494 740 -  4147112  
i caePb3.Scfld02_0      I 12 I 32
s caeJap4.Scaffold17990   280871 695 +   357190  
i caeJap4.Scaffold17990 I 5 C 0

a score=173.000000
s ce10.chrX              2942214 23 + 17718866 TTCTGGGATTTTCTGTGAATTTT
s caeJap4.Scaffold17990   281566 21 +   357190 ATCC--AATATTcagttattttt
i caeJap4.Scaffold17990 C 0 I 6
e caePb3.Scfld02_0       3588234 32 -  4147112 I
e cb4.chrX              17686699 39 - 21540570 I
e caeSp111.Scaffold582    422160 33 +   484378 I
e caeRem4.Crem_Contig15   416036 31 -  1794024 I

a score=0.000000
s ce10.chrX              2942237 705 + 17718866  
e caePb3.Scfld02_0       3588234  32 -  4147112 I
e caeJap4.Scaffold17990   281587   6 +   357190 I
e cb4.chrX              17686699  39 - 21540570 I
e caeSp111.Scaffold582    422160  33 +   484378 I
e caeRem4.Crem_Contig15   416036  31 -  1794024 I

a score=150.000000
s ce10.chrX              2942942 5 + 17718866 ATTTT
s caeRem4.Crem_Contig15   416067 5 -  1794024 ATGTA
i caeRem4.Crem_Contig15 I 31 C 0
s caeJap4.Scaffold17990   281593 5 +   357190 accTT
i caeJap4.Scaffold17990 I 6 C 0
e caePb3.Scfld02_0       3588234 32 -  4147112 I
e cb4.chrX              17686699 39 - 21540570 I
e caeSp111.Scaffold582    422160 33 +   484378 I

a score=485.000000
s ce10.chrX              2942947 2 + 17718866 TT
s caeRem4.Crem_Contig15   416072 1 -  1794024 -T
i caeRem4.Crem_Contig15 C 0 I 1
s caePb3.Scfld02_0       3588266 2 -  4147112 tt
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold17990   281598 2 +   357190 CT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17686699 39 - 21540570 I
e caeSp111.Scaffold582    422160 33 +   484378 I

a score=910.000000
s ce10.chrX              2942949 1 + 17718866 T
s caeRem4.Crem_Contig15   416074 1 -  1794024 T
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    422193 1 +   484378 T
i caeSp111.Scaffold582  I 33 C 0
s caePb3.Scfld02_0       3588268 1 -  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   281600 1 +   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17686699 39 - 21540570 I

a score=1245258.000000
s ce10.chrX              2942950 1311 + 17718866  
s cb4.chrX              17686738 1377 - 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig15   416075 1310 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    422194 1358 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3588269 1355 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   281601 1308 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=3898.000000
s ce10.chrX              2944261 6 + 17718866 GGTTAG
s cb4.chrX              17688115 6 - 21540570 GGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417385 6 -  1794024 GGTAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423552 6 +   484378 GGCAAG
i caeSp111.Scaffold582  C 0 I 34
s caeJap4.Scaffold17990   282909 6 +   357190 GGTAGG
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3589624 0 -  4147112 C

a score=-8391.000000
s ce10.chrX              2944267 49 + 17718866 T---GGACAAGTAGTTTGTAGAAAAAACTATTCAAT----------CTCTAGACTAAAAATA
s cb4.chrX              17688121 26 - 21540570 TTAGGGATAAATGGTTTA------CAgtattt------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417391 46 -  1794024 TTGTTAAT--TTTGTTTAT----GCAGTTTTTCGAT----------TTATAATTTAAACATA
i caeRem4.Crem_Contig15 C 0 I 13
s caeJap4.Scaffold17990   282915 41 +   357190 ---------------------TGGAAATTgtttaataaaaacaaaattaaaaacaaaaaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3589624  0 -  4147112 C
e caeSp111.Scaffold582    423558 34 +   484378 I

a score=188.000000
s ce10.chrX              2944316 7 + 17718866 ACATAAT
s caeJap4.Scaffold17990   282956 7 +   357190 aagcaat
i caeJap4.Scaffold17990 C 0 I 8
e caePb3.Scfld02_0       3589624 0 -  4147112 C
e cb4.chrX              17688147 0 - 21540570 C
e caeSp111.Scaffold582    423558 34 +   484378 I
e caeRem4.Crem_Contig15   417437 13 -  1794024 I

a score=-3393.000000
s ce10.chrX              2944323 636 + 17718866  
s cb4.chrX              17688147 471 - 21540570  
i cb4.chrX              C 0 I 66
e caePb3.Scfld02_0       3589624   0 -  4147112 C
e caeJap4.Scaffold17990   282963   8 +   357190 I
e caeSp111.Scaffold582    423558  34 +   484378 I
e caeRem4.Crem_Contig15   417437  13 -  1794024 I

a score=0.000000
s ce10.chrX              2944959 99 + 17718866 TCAAAAACTGATTTCCTGTGGAAGCTGATTCCCGCGTATTCGAGAATTTGTTAGTTGTTAGTAAGCGCGCTCTAATGACAATGAACGCTCCTGGACACA
e caePb3.Scfld02_0       3589624  0 -  4147112 C
e caeJap4.Scaffold17990   282963  8 +   357190 I
e cb4.chrX              17688618 66 - 21540570 I
e caeSp111.Scaffold582    423558 34 +   484378 I
e caeRem4.Crem_Contig15   417437 13 -  1794024 I

a score=614.000000
s ce10.chrX              2945058 17 + 17718866 TTCTGCGATAAATTTCA
s cb4.chrX              17688684 17 - 21540570 ttttgctcaaaatttaa
i cb4.chrX              I 66 C 0
e caePb3.Scfld02_0       3589624  0 -  4147112 C
e caeJap4.Scaffold17990   282963  8 +   357190 I
e caeSp111.Scaffold582    423558 34 +   484378 I
e caeRem4.Crem_Contig15   417437 13 -  1794024 I

a score=447.000000
s ce10.chrX              2945075 9 + 17718866 ATTTAAAAA
s cb4.chrX              17688701 4 - 21540570 attt-----
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   282971 9 +   357190 atttaaaaa
i caeJap4.Scaffold17990 I 8 C 0
e caePb3.Scfld02_0       3589624 0 -  4147112 C
e caeSp111.Scaffold582    423558 34 +   484378 I
e caeRem4.Crem_Contig15   417437 13 -  1794024 I

a score=3296.000000
s ce10.chrX              2945084 5 + 17718866 TTTCA
s cb4.chrX              17688705 5 - 21540570 tttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417450 5 -  1794024 TTGCA
i caeRem4.Crem_Contig15 I 13 C 0
s caeSp111.Scaffold582    423592 5 +   484378 TTTCA
i caeSp111.Scaffold582  I 34 C 0
s caeJap4.Scaffold17990   282980 5 +   357190 tttta
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3589624 0 -  4147112 C

a score=86993.000000
s ce10.chrX              2945089 307 + 17718866 GGTGGATGGCTCTGCGTCCACTTCTCCGTGTTCTCGCTCGTCATCGTTCGACCGTTGAAAGTTCTGCAATTTTGGAATCTGTTGAAGAAGAA-AG---CGCCGACTCACACATGTTCTGAAAAGTTTTGATGTCTCCATAGCGACTACTTTTTTCTGTCT-GTCATAATACTTTTTTTTGTGTGTTACACTTAC-----TCGGTATTGTAAATGTTCTCATGGTCTATATTAAATCTT-----TGCTCGTCTAAATTGTCTCT--------TTTTACTAAGCTTC------CATAGGTTCTCACAATTTTTTTTC------TCGCCATTCTTTGCACAAGTT
s cb4.chrX              17688710 263 - 21540570 ggtggCTCGCACTCCGCCCACTCCTCCGTGTTCTCGCCCGTCATCGTTCCACTGTTGAGAGCTCCGCCGTGCTCGAGTCTGTCCAAGAGGAA-GA---CGCCGACACCCATATGTTCTAAA-------------------GCA-----TCCAGCCCGCCTAAACATAACCTATTGTACTGT-------AAATGACtcggtttttttctctctagg-----CGGTTTATATTAAATCTC-GCCATacctttttt-------tct-------actttgaCCCGCAGCTGTTTTTC----TCTC--------------------TCGCCATACTTTGTACAAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417455 281 -  1794024 GGTGGCTCGGACTTCGCCCACTTCTTCGTGTCCTCGCTCGTCATCGTTGCAACGTCGAAAGCTCAGCCGTCTTGGAGTCCGTTGAGGAGGAG-AG---TGCTGACACCCATATGTTCTAAA------------------------------CGCTCGCTT-GTCATAATCTATTGTATTGT-------AATTAA----ACGATTTTCAAACAAGT-----AGATTTATATTAAATCTCTGTCATTCTCCTCTT-AATGCCTCTCCGTAACATTTTTCTCCGCTACTTCCTTCCCTGTTCTCTATAGTTTAAT---------TCGCCATACTTTGTACAAGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423597 274 +   484378 GGTGGCTCGGACTCCGTCCACTTCTCCGTGTCCTTGCTCGTCATCGTTCAACTGTTGAGAGTTCTGCTGTGCTTGAGTCTGTTGAGGAAGAGCAG----GAGGACAGCCACATGTTCTAGA-------------------GC-------------CGTTCTGGCataatctatttt-ttgt-------aattac-----TCGGTTTTGTATAATC-----TGATTTATATTAAATCTC-GTCATCTCTTC----GATGTCTCTTCTCATTATTTTGATACTTAAAGTCC--ACCCGTTTTCCGCAGCTTTTCTTAT-------GCCATACTTTGTACAAGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3589624 279 -  4147112 GGTGGCTTGGACTCCGTCCACTCCTCCGTGTCCTTGCTCGTCATCGTTCAACAGTCGAGAGCTCTGCCGTTCTTGAGTCGGTTGAGGAGGAG-AGCGCCGACGATACCCATATGTTCTAG--------------------GC---------GTCGCGTCTTGTCATAACCCA-TTT-TTGT-------AATTAC-----TCGGTTTCATACAAAC-----TGATTTATATTAAATCTC-GCCATCCCACCA---GATGTCTCCCGTAAAT-TTTCGCTACTTCAG------CCCTGTTCTccacagttttttctctt---ctcgcCACACTTTGTACAAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   282985 240 +   357190 ggtGGTTGGGACTTCGTCCTCTTCTCCGTGTGCTCTCTCGTCATCGCTCCACATATGAAAGTTCTGCTATTTTAGAGTCAGTCGAGGAGGTG-GA---AGAGGATACCCATATGTTTTAA---------------------------------------TTGTCATAA---------TTGC-------AAATAA-----Tttacttttgat-ttt-----tggttTATATTAAGCCGC-GGCGTATCTTT----GCACACTCT--------TTT-----------------TCTCGTTTT--GCAGTTTTTGATTATGTACTCGCCATACTTTGTACAAGTT
i caeJap4.Scaffold17990 C 0 I 1373

a score=-66147.000000
s ce10.chrX              2945396 267 + 17718866 GATTGAAGTCTTAGCCCCTATTTCTTAGTAGTTGAAAA------------TATGCCATGATGCAAATAAATGAAGTGTTTTAAAATATGTAGTTATTTTAAAAATATGTTTATTCAAAGTATTTTATCATTAGAACTGTTCCTATGAAAAGTTTTTTTTGTTCCAAAGCTACAGAGGTTTAAAAA-----------------------------AAAATC--------------------------ATCTAAAAGTAGACCCGTGAGATGTCCACCGCTATATCTCC--------AGTCAAACTTCTGTTGAAAATTTTAGGGGATCTGAAAAAGAAATCAG-
s cb4.chrX              17688973  66 - 21540570 G-----------------TATTTCTTGATC------------------CACCCATCCCCATGCAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAGTA---------------------------------------TATAGATTTTCCGCGTAAA----------------------AATGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417736 132 -  1794024 G-----------------TATTACTT--------------------------CTTCCCGTTGCAATT----------------------------------------------------------------------------------------------------TTTGCTAGAATTT----------------------------------ACAATG--------ATGATGCA----------AATAAAAATA-------------GTGTTGTGAAATATGCTCTTTGaggttttgaacattttgtgTCGATGGGTAT---TTGAGAAACTTCGATTTCG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    423871 227 +   484378 g-----------------tatttttttatcattcgCAA------CTAGTGCCCATGATGATGCAAATAAA--TAGTGTTGT---------------------------------------------------GAAATATTGTGCT-CTAGTTTCTTGTTATGA--AATCTGCTGGGTTTGCAAATCATTCCAAAGAGCTACACAGCTCGttaagaaaatg--------aggaaaaattGTTGAGAGACCAAAGAGCggggggggggTGTGCGCATGAAACTGTGCTC--------------------CTGGAAATG--------CGGGGGAGATTCGAACGG-
i caeSp111.Scaffold582  C 0 I 41
s caePb3.Scfld02_0       3589903 238 -  4147112 G-----------------TATTTCAAC-CCAATCGCAATTATTGCTAGTATATATGATGATGCAAATAAAAGTAGTATTgt---------------------------------------------------aaaatgattttat-ttGGGACTTCCTGATTC--TTTCagcaatattttcagatggatttgatga------------------aaaatgttttcaatatagAGAATTGTC-----ATCAAAAAGC-GATTCCCGACATGTGCCGCAAAATGTGTTC--------TATAGAGCACGTTTGCAaatgtcgatttacgggaAAGAAAAGATCAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   283225 1373 +   357190 I

a score=-3457.000000
s ce10.chrX              2945663 31 + 17718866 CAATATTGTGAACAACATTTTGATTAATTTC-------
s cb4.chrX              17689039 25 - 21540570 CAAA----TAAATAGcgttgtga--aatttt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417868 21 -  1794024 CAAT----TCACCAG----GCGA--gatcac-------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3590141 28 -  4147112 CGat----ttcacaa----caaa--aattattgaattc
i caePb3.Scfld02_0      C 0 I 584
e caeJap4.Scaffold17990   283225 1373 +   357190 I
e caeSp111.Scaffold582    424098 41 +   484378 I

a score=487.000000
s ce10.chrX              2945694 23 + 17718866 ACTATAATATTTGATCTTTTTGG
s cb4.chrX              17689064 18 - 21540570 ----gagtttggtGTATTTTTG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417889 19 -  1794024 ----tgattttttataCTTTTGG
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3590169 584 -  4147112 I
e caeJap4.Scaffold17990   283225 1373 +   357190 I
e caeSp111.Scaffold582    424098 41 +   484378 I

a score=-19999.000000
s ce10.chrX              2945717 137 + 17718866 ----------CACTATAAGTATAGACTATTAATTAATCTAAATGATATTTGTATTTGTTACAAAATCAAGACA------------AGAATCTTTAATACACAGAAATATATTTTATTTCTAAAAAGTATGTACAAAGTCCATATATCACAGTGAGAAAC
s cb4.chrX              17689082  30 - 21540570 -------------------------------------------------------------------------------------AGAGTTATTAGTAC-----AATTT----------------------------------TATTGTTCTAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   417908 118 -  1794024 CAAATTCTTTGATATAAGTCAGAAACT-TGAATG-----AAATGACACAAATAA-------------CAACCAAtactgaattcaaaatttattgggAG-----AATATATGCAAT-----------------GAGATTCAAATAGTGTTATGAGAAAA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    424139  71 +   484378 ----------CATTAAAATTGTAAACT-TTCATT---TCAAGTGAAATATGTACGC----TGAGATTCAAACAGT----------AAATTTTTAGAgag------------------------------------------------------------
i caeSp111.Scaffold582  I 41 C 0
e caePb3.Scfld02_0       3590169 584 -  4147112 I
e caeJap4.Scaffold17990   283225 1373 +   357190 I

a score=-1777.000000
s ce10.chrX              2945854 9 + 17718866 ACTTAAATC-----
s caeRem4.Crem_Contig15   418026 8 -  1794024 AGCT-ATCG-----
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3590753 9 -  4147112 -----ATTCAAGAA
i caePb3.Scfld02_0      I 584 C 0
e caeJap4.Scaffold17990   283225 1373 +   357190 I
e cb4.chrX              17689112 0 - 21540570 C
e caeSp111.Scaffold582    424210 0 +   484378 C

a score=531606.000000
s ce10.chrX              2945863 1198 + 17718866  
s cb4.chrX              17689112 1237 - 21540570  
i cb4.chrX              C 0 I 121
s caeRem4.Crem_Contig15   418034 1222 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    424210 1213 +   484378  
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3590762 1225 -  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17990   284598 1266 +   357190  
i caeJap4.Scaffold17990 I 1373 C 0

a score=910.000000
s ce10.chrX              2947061 1 + 17718866 T
s caeRem4.Crem_Contig15   419261 1 -  1794024 t
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    425424 1 +   484378 T
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3591992 1 -  4147112 T
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17990   285864 1 +   357190 t
i caeJap4.Scaffold17990 C 0 I 138
e cb4.chrX              17690349 121 - 21540570 I

a score=2587.000000
s ce10.chrX              2947062 16 + 17718866 CTGATCTTAAAAATGA
s caeRem4.Crem_Contig15   419262 16 -  1794024 ccgatCTTTCAACTGA
i caeRem4.Crem_Contig15 C 0 I 35
s caeSp111.Scaffold582    425425 12 +   484378 TCAATCTTTGAA----
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3591993 16 -  4147112 TCAAcctttgaactga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I

a score=91.000000
s ce10.chrX              2947078 1 + 17718866 A
s caePb3.Scfld02_0       3592009 1 -  4147112 a
i caePb3.Scfld02_0      C 0 I 113
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I
e caeSp111.Scaffold582    425437 0 +   484378 C
e caeRem4.Crem_Contig15   419278 35 -  1794024 I

a score=272.000000
s ce10.chrX              2947079 10 + 17718866 GTAGCGCCAG
s caeSp111.Scaffold582    425437 10 +   484378 CTAATGACAG
i caeSp111.Scaffold582  C 0 I 71
e caePb3.Scfld02_0       3592010 113 -  4147112 I
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I
e caeRem4.Crem_Contig15   419278 35 -  1794024 I

a score=0.000000
s ce10.chrX              2947089 524 + 17718866  
e caePb3.Scfld02_0       3592010 113 -  4147112 I
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I
e caeSp111.Scaffold582    425447  71 +   484378 I
e caeRem4.Crem_Contig15   419278  35 -  1794024 I

a score=180.000000
s ce10.chrX              2947613 71 + 17718866 TTCAGCCACTTTGTTAAAAATGACTGTATACTATAATATTA---------TCTTTATCTTATCAGCTATTAGAAAAAAAC
s caeRem4.Crem_Contig15   419313 62 -  1794024 TTCAGACTATCTGT----AATGACTAAAAgttataaaatcaaaaataaactagttttcttatca--------------aa
i caeRem4.Crem_Contig15 I 35 C 0
e caePb3.Scfld02_0       3592010 113 -  4147112 I
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I
e caeSp111.Scaffold582    425447 71 +   484378 I

a score=3623.000000
s ce10.chrX              2947684 39 + 17718866 AACCAAAGATTTC-----ACGTTGGTCCTGTCAGATTGTATTTG
s caeRem4.Crem_Contig15   419375 44 -  1794024 aaccGAAGATTTTGTTGAATTCAGTTCCTATCAAGTGtaatttg
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    425518 44 +   484378 aactaaaaattttgtcaaaaattgttCCAATCAAATGTGATTGA
i caeSp111.Scaffold582  I 71 C 0
e caePb3.Scfld02_0       3592010 113 -  4147112 I
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I

a score=-747.000000
s ce10.chrX              2947723 4 + 17718866 ----ATAA
s caeRem4.Crem_Contig15   419419 6 -  1794024 acaaat--
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    425562 4 +   484378 ----ATAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3592123 4 -  4147112 ----atcg
i caePb3.Scfld02_0      I 113 C 0
e caeJap4.Scaffold17990   285865 138 +   357190 I
e cb4.chrX              17690349 121 - 21540570 I

a score=450.000000
s ce10.chrX              2947727 2 + 17718866 AA
s caeSp111.Scaffold582    425566 2 +   484378 TA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3592127 2 -  4147112 aa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   286003 2 +   357190 aa
i caeJap4.Scaffold17990 I 138 C 0
e cb4.chrX              17690349 121 - 21540570 I
e caeRem4.Crem_Contig15   419425 0 -  1794024 C

a score=73836.000000
s ce10.chrX              2947729 141 + 17718866 TTTCAGGTTCCGCCGACAGTATGGCTGGGCAGGGTCACCATACTACGGAAATGCGCAGTATTACGAGACACAGCCGCAGCAACAGTGGTCGTC------TCAATATCA---GGTTT-------TTTTGAAAAC-CCACTTCACGGTTTTTGATTACT-T
s cb4.chrX              17690470 129 - 21540570 tttcagattccgtcGGCAATACGGGTGGGGAGTGTCACCGTACTACAACGCTGCGCAATACTACGAGAATCAACCTCAG---CAATGGTCATC---------ATCACAAACGGTTCG-----GGTTACTTGAT------------CTCTTGATGTTTG-
i cb4.chrX              I 121 I 586
s caeRem4.Crem_Contig15   419425 140 -  1794024 tttcagatttcgacgGCAATATGGGTGGGGAGGACAACCTTACTACGGCGCCGCGCAGTATTACGAAACACAACCTCAA---CAGTGGTCATC------TCAATCTCA---GTATCA-----GGTTAATAGAT-AGATGAAACGGTTTTTGATGATTA-
i caeRem4.Crem_Contig15 C 0 I 3
s caeSp111.Scaffold582    425568 135 +   484378 TTTCAGATTCCGAAGACAATATGGGTGGGGAGGGTCTCCTTACTACGGC---GCGCAGTATTACGAGACACAACCTCAA---CAGTGGTCATC------TCAATATCA---GGTTTC------TTCAAAGAAT-TCATCGAATGGTTTTTGATGATC--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3592129 136 -  4147112 tttcagattccgacGACAGTACGGTTGGGGAGGGTCACCTTACTACGGCAGTGCGCAATATTACGAGACACAACCTCAG---CAATGGTCATC------TCAATATCa---ggtt--------ttcaaagaat-tcatcaaatggtttttgattgtT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   286005 150 +   357190 tttcagATTTCGAAGGCAATACACTTGGGGAGTAACGCCGTACTACGAACACGGGCAATATTACGAAACCCAACCGCAA---CAGTGGTCATCTCACAATCAGTATCA---GGTTTTTCTACTTTTCAAGAATAAAATAGCAAAGTTTATTACCCC---
i caeJap4.Scaffold17990 C 0 C 0

a score=410317.000000
s ce10.chrX              2947870 1077 + 17718866  
s cb4.chrX              17691185 1149 - 21540570  
i cb4.chrX              I 586 C 0
s caeRem4.Crem_Contig15   419568 1209 -  1794024  
i caeRem4.Crem_Contig15 I 3 C 0
s caeSp111.Scaffold582    425703 1182 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3592265 1176 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   286155 1196 +   357190  
i caeJap4.Scaffold17990 C 0 I 128

a score=910.000000
s ce10.chrX              2948947 1 + 17718866 T
s cb4.chrX              17692334 1 - 21540570 T
i cb4.chrX              C 0 I 975
s caeRem4.Crem_Contig15   420777 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    426885 1 +   484378 t
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3593441 1 -  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   287351 128 +   357190 I

a score=492.000000
s ce10.chrX              2948948 4 + 17718866 AAAT
s caeRem4.Crem_Contig15   420778 4 -  1794024 Aaat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    426886 4 +   484378 caat
i caeSp111.Scaffold582  C 0 I 189
s caePb3.Scfld02_0       3593442 4 -  4147112 tggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   287351 128 +   357190 I
e cb4.chrX              17692335 975 - 21540570 I

a score=-1036.000000
s ce10.chrX              2948952 13 + 17718866 --ATTGTATCTATAA
s caeRem4.Crem_Contig15   420782 13 -  1794024 ctctttt--ctgaaa
i caeRem4.Crem_Contig15 C 0 I 252
s caePb3.Scfld02_0       3593446  5 -  4147112 --atttt--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   287351 128 +   357190 I
e cb4.chrX              17692335 975 - 21540570 I
e caeSp111.Scaffold582    426890 189 +   484378 I

a score=669.000000
s ce10.chrX              2948965 16 + 17718866 ACTTTTTTCTCCACGT
s caePb3.Scfld02_0       3593451 15 -  4147112 -tttttgtctctgtGT
i caePb3.Scfld02_0      C 0 I 629
e caeJap4.Scaffold17990   287351 128 +   357190 I
e cb4.chrX              17692335 975 - 21540570 I
e caeSp111.Scaffold582    426890 189 +   484378 I
e caeRem4.Crem_Contig15   420795 252 -  1794024 I

a score=0.000000
s ce10.chrX              2948981 1190 + 17718866  
e caePb3.Scfld02_0       3593466  629 -  4147112 I
e caeJap4.Scaffold17990   287351  128 +   357190 I
e cb4.chrX              17692335  975 - 21540570 I
e caeSp111.Scaffold582    426890  189 +   484378 I
e caeRem4.Crem_Contig15   420795  252 -  1794024 I

a score=544.000000
s ce10.chrX              2950171 31 + 17718866 TTTTTTTTGCTCTCTCAAAATGCAAGCGACC
s caeJap4.Scaffold17990   287479 22 +   357190 tttctttctttctttcaaaaCG---------
i caeJap4.Scaffold17990 I 128 C 0
e caePb3.Scfld02_0       3593466 629 -  4147112 I
e cb4.chrX              17692335 975 - 21540570 I
e caeSp111.Scaffold582    426890 189 +   484378 I
e caeRem4.Crem_Contig15   420795 252 -  1794024 I

a score=0.000000
s ce10.chrX              2950202 2 + 17718866 TT
e caePb3.Scfld02_0       3593466 629 -  4147112 I
e caeJap4.Scaffold17990   287501 0 +   357190 C
e cb4.chrX              17692335 975 - 21540570 I
e caeSp111.Scaffold582    426890 189 +   484378 I
e caeRem4.Crem_Contig15   420795 252 -  1794024 I

a score=227000.000000
s ce10.chrX              2950204 484 + 17718866  
s cb4.chrX              17693310 517 - 21540570  
i cb4.chrX              I 975 I 16
s caeRem4.Crem_Contig15   421047 486 -  1794024  
i caeRem4.Crem_Contig15 I 252 I 1
s caeSp111.Scaffold582    427079 504 +   484378  
i caeSp111.Scaffold582  I 189 C 0
s caePb3.Scfld02_0       3594095 483 -  4147112  
i caePb3.Scfld02_0      I 629 C 0
s caeJap4.Scaffold17990   287501 468 +   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=521.000000
s ce10.chrX              2950688 6 + 17718866 CAGCTC
s caeRem4.Crem_Contig15   421534 4 -  1794024 cagc--
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    427583 6 +   484378 cagcta
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3594578 6 -  4147112 CAACTC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   287969 6 +   357190 tatctt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17693827 16 - 21540570 I

a score=91.000000
s ce10.chrX              2950694 1 + 17718866 T
s caeJap4.Scaffold17990   287975 1 +   357190 t
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3594584 2 -  4147112 I
e cb4.chrX              17693827 16 - 21540570 I
e caeSp111.Scaffold582    427589 0 +   484378 C
e caeRem4.Crem_Contig15   421538 0 -  1794024 C

a score=985.000000
s ce10.chrX              2950695 29 + 17718866 --CACTTTTTTTCTCGTTTTGTGTCTATTTA
s caeRem4.Crem_Contig15   421538 26 -  1794024 ----cttttcttctt-ttttgttcctagttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold17990   287976 29 +   357190 cgttcgttccttct--ttcttttttcattca
i caeJap4.Scaffold17990 C 0 I 73
e caePb3.Scfld02_0       3594584  2 -  4147112 I
e cb4.chrX              17693827 16 - 21540570 I
e caeSp111.Scaffold582    427589  0 +   484378 C

a score=211.000000
s ce10.chrX              2950724 5 + 17718866 TCTAA
s caeRem4.Crem_Contig15   421564 5 -  1794024 ttcaa
i caeRem4.Crem_Contig15 C 0 I 24
e caePb3.Scfld02_0       3594584 2 -  4147112 I
e caeJap4.Scaffold17990   288005 73 +   357190 I
e cb4.chrX              17693827 16 - 21540570 I
e caeSp111.Scaffold582    427589 0 +   484378 C

a score=0.000000
s ce10.chrX              2950729 1367 + 17718866  
e caePb3.Scfld02_0       3594584    2 -  4147112 I
e caeJap4.Scaffold17990   288005   73 +   357190 I
e cb4.chrX              17693827   16 - 21540570 I
e caeSp111.Scaffold582    427589    0 +   484378 C
e caeRem4.Crem_Contig15   421569   24 -  1794024 I

a score=279.000000
s ce10.chrX              2952096 39 + 17718866 CCCTTGTTCTTTAAAATTTCTCTATACTTGGATCAAATT
s cb4.chrX              17693843 31 - 21540570 cccttattttccgtgattcttcc-----tggatt---ct
i cb4.chrX              I 16 C 0
e caePb3.Scfld02_0       3594584  2 -  4147112 I
e caeJap4.Scaffold17990   288005 73 +   357190 I
e caeSp111.Scaffold582    427589  0 +   484378 C
e caeRem4.Crem_Contig15   421569 24 -  1794024 I

a score=1996.000000
s ce10.chrX              2952135 9 + 17718866 TTTTTTTGT
s cb4.chrX              17693874 9 - 21540570 tttttctgt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    427589 9 +   484378 ttttcttgt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3594584 2 -  4147112 I
e caeJap4.Scaffold17990   288005 73 +   357190 I
e caeRem4.Crem_Contig15   421569 24 -  1794024 I

a score=-1774.000000
s ce10.chrX              2952144 15 + 17718866 TCCTTATT--------TTGCTTG--
s cb4.chrX              17693883 15 - 21540570 tccagctc--------taaattt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   421593 15 -  1794024 tcctattt--------ttcattt--
i caeRem4.Crem_Contig15 I 24 C 0
s caeSp111.Scaffold582    427598 25 +   484378 tcCAACTTCTTCGACACTCATCCTA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3594584  2 -  4147112 I
e caeJap4.Scaffold17990   288005 73 +   357190 I

a score=-6712.000000
s ce10.chrX              2952159 61 + 17718866 TCAGTTTACAGCTCTACAGCACATTCTTTACATGCAG-------TCGGACGTTCAGTAGGCA---------ACGCTT
s cb4.chrX              17693898 57 - 21540570 gctttctttttttccat---------ttttcatctaG-------T-AGACGTTCTTT---CTAGTGCCCGTATGTgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   421608 53 -  1794024 tctccataTCCCTCTAC--------ATCCACATTCAG-------TCAGACGTTCCAT---CT------TCCACGTat
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    427623 61 +   484378 TCTATCTTCTGTTCTATTTC----AGTCTCCTTCTAGGTTCACATACAACGTTCACC---CA---------ACGTAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3594586 57 -  4147112 TTGTTCCTACTTCCTTCATC----TATCGTCTTCTTACTT----TCCAACGTTCAGC---CA---------ACGTAT
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17990   288005 73 +   357190 I

a score=146764.000000
s ce10.chrX              2952220 227 + 17718866 AC-AAAAAATAGGGAAAA-GAGCTGCCAAATGGATTTAGTGATGTAACTTAATTCTGCTTTGTTTTCATCTAGTTTGGTGCACAATTCTACATTCCACTTGTTTTGCATGTG--ACTT---------TGACTTTTGAAAG----CTAATGTAGCAGAAGCGAAAACGCACAAATGGGTT-------C-ATCGT------------GATGAGGAAG-----GTAGA-ATAAACAACTTGCAACAATA-------ATTCATTCATATTCATCAC-----------ATATG--
s cb4.chrX              17693955 257 - 21540570 ataaaaaagagaaaacaa-gaaCTGCCAAATGGATTTAGTGATGTAACCTAATTCGGCTTTGTTGTCATCGAGTTTGGTGCACAATT------GCTACTTGTTTTGCATGTG--ACATTGTGTTTTATgacttttgaaagaaaactAATGTAGCAGAAGCAGAATGG-----GGCTACTCGGGGGACGGTCATAACTTTTTgggagaagaggaggaagcTATGGA-ATAAACAATATGCAGCAACA-----TAATTGATTCTGGTTTTGGAC-----------CCACG--
i cb4.chrX              C 0 I 75
s caeRem4.Crem_Contig15   421661 237 -  1794024 acaaaaaagtgaggaGAA-GAGCTGCCAAATGGATTTAGTGATGTAACCTAATTCTGCTTTGTTTTCATCTAGTTTGGTCCACAATT-------CCACTTGTTTTGCATGTG--ACATTGTGTTAGATGACTTTTGAAAG----CTAATGTAGCATAagcaaaaacgcaaaaagctATT----GGAC-ATCATAACTT----AGAGTATAGAGGAA----ATAGACATAAACAAGTTGCAacaat------tcattcattcttcTCTAGA--------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    427684 229 +   484378 AC--AGAAATAGGGAGAA-GAGCTGCCAAATGGATTTAGTGATGTAACCTAATTTTGCTTTGTTTTCATCTAGTTTGGTGCACAATT-------CCACTTGTTTTGCATGTG--ACATTGTGTTAGATGACTTTTGAAAG----CTAATGTAGCATGAGGAAAAACGCAAAAAGCAATT----GGAC-ATCAT----------AAGAGGAGAAAGA----ATAGGAATAAACAAGTTGCAAcaata-------tttcattcatttcaagag-------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3594643 245 -  4147112 AC-AAAAAATACGGAGAA-GAGCTGCCAAATGGATTTAGTGATGTAACCTAattttgctttgttttcaTCTAGTTTGGTGCACAATT-------CCACTTGTTTTGCATGTG--ACATTGTGTTAGATGACTTTTCAAAG----CTAATGTAGCATAAGCAAAAACGCAAAAAGCTATT----GGAC-ATCATAACCC--taaaagaggaggaaga----agaggaataaaCAAGTTGCaacaataattcatttttcattcattctcagAG-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   288078 254 +   357190 acaaaaaaacgagaagaGCTAGCTGCCAAGTGGATTTAAGAATGTAACCTAATTTCGCTTTGTTTTCATCTAGTTTGGTGCACAATT-------CCATTTGTTTTGCATGTGTAACATGTTGTTAGATGACTTTTGGAAAGAAACTAGTGTAGCAGaagcaaaaacacaaaaagccGG-----GGAC-ACTATAACTG-------CGAGGGCTCGC----ACTAA-ATAAACAACTTGCAAC-----------ATCCAATTCTACCAAAAGCGACACTACACGACACGAA
i caeJap4.Scaffold17990 I 73 C 0

a score=-5787.000000
s ce10.chrX              2952447 35 + 17718866 ATGCTTGATCTTTCTTCCGCTTCCA-----------GCTTCTCCCA
s caeRem4.Crem_Contig15   421898 33 -  1794024 ATAA------CTTTTCCCATCCGAACT-------TCGATCTCTACT
i caeRem4.Crem_Contig15 C 0 I 57
s caeSp111.Scaffold582    427913 27 +   484378 aaaaacg---ttttttcccTCT----------------CCCTCATT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3594888 32 -  4147112 ATACACG---TTTTgtccattcaaa-----------aatcctcCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   288332 43 +   357190 ACGCATT---TCTCTTCCTCTTCCACTCGaaacgtcgttttttttt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694212 75 - 21540570 I

a score=-6628.000000
s ce10.chrX              2952482 35 + 17718866 TGGTATGTT---------TTTCTTCAATCTTACAGATG------------------GAAAAA---------------------------------------
s caeSp111.Scaffold582    427940 27 +   484378 CAA-----------------ACTTCGATCTTTCACTTA------------------TAGAAA---------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3594920 27 -  4147112 GAA-----------------ACTTCGATCCTTCATTTG------------------TAAAAA---------------------------------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17990   288375 94 +   357190 -------tttcattttcatttattcACTCCTCCAACTGCTACCTAATACTAAAGCACAAAGACAGCTGATATGCGAACCAAATAAAATAAGATCTGAAAGT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694212 75 - 21540570 I
e caeRem4.Crem_Contig15   421931 57 -  1794024 I

a score=1003.000000
s ce10.chrX              2952517 2 + 17718866 TT
s caeRem4.Crem_Contig15   421988 2 -  1794024 TT
i caeRem4.Crem_Contig15 I 57 C 0
s caeSp111.Scaffold582    427967 1 +   484378 -T
i caeSp111.Scaffold582  C 0 I 17
s caePb3.Scfld02_0       3594954 1 -  4147112 -T
i caePb3.Scfld02_0      I 7 I 9
s caeJap4.Scaffold17990   288469 2 +   357190 TT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694212 75 - 21540570 I

a score=-20477.000000
s ce10.chrX              2952519  42 + 17718866 GATAAGAACT----------------AGGCTCCAAACC---------ACTCTAAC---------------------------------------------TAATAGTACCAC
s cb4.chrX              17694287  33 - 21540570 GATAA-------------------GAAGTAACTGATCT---------ACTATAAA--------------------------------------------ATAGTA-------
i cb4.chrX              I 75 C 0
s caeRem4.Crem_Contig15   421990  51 -  1794024 GATAAGGGCT--------TGGAATGAAGTAAGCGATca---------tccaaaaa--------------------------------------------ataataataccCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    427985 100 +   484378 aaaaacagatACCAAGACTCGAAAACAATCACTGA------------TCCGGAAGTGTGATAAGAACttgaaatgagcaaaaaGTAAGTTATTGTCACTAAAACAGTGTTTA
i caeSp111.Scaffold582  I 17 C 0
s caePb3.Scfld02_0       3594964 100 -  4147112 GATAACAACTTCCAGAGAGCAAAAACAATCACTGATCAAGAAGTTTGATAAAAAC------------TCGGAATGCACAAAACGTGAGTTATCACCTTCAGAATAGTACCTA
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17990   288471  30 +   357190 GATAAGAAA--------------------------------------TCGAGAAG--------------------------------------------TGAATAGTACCTC
i caeJap4.Scaffold17990 C 0 I 13

a score=-8541.000000
s ce10.chrX              2952561 18 + 17718866 AACGCCGG-----TTTATGTTTT------
s cb4.chrX              17694320  9 - 21540570 -------------CCTATA-GCG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   422041 23 -  1794024 GGAAACAG-----CCGATG-ATGTCAATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    428085 22 +   484378 GAATATAAGAGACGCTGTG-AAT------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3595064 16 -  4147112 GAATAT-------GCCATGAAAT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288501 13 +   357190 I

a score=30810.000000
s ce10.chrX              2952579 77 + 17718866 TGTCAGCTGTTG-CG------AATTTGTTTTCTGACGTCTCGTTGGTAACACCA------AATCGTTTTAT---------TGGCGTTGTAGATAATGGC
s cb4.chrX              17694329 82 - 21540570 CGTCAGCTGCTT-CGGAGAGCAA----TTTTCGA-CGCATCGTT--TTCCATCAGATTCGAATCGTTTTAT---------TGACGTACGAAGTAATGGC
i cb4.chrX              C 0 I 1229
s caeRem4.Crem_Contig15   422064 77 -  1794024 CGTCAGCTGCTC-TG------AA----TTTTCTATCACATCGTT--TTCGATTGAGtttgaattgttttat---------tgACGTGCCAAGAAATGCC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    428107 71 +   484378 TGTCAGCTGGCG-TC------AC----TTTTCTATCGCCTCGTT--TTCTatca------aattgttttat---------tgatGTGTCAAATAATGGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3595080 78 -  4147112 CGTCAGCTGTCGATA------AA----ACTTCTATCGCCTCGTT--TTCTATCAAGTTTGAATTGTTTTAT---------TGACGTGCCAAATAATGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   288514 84 +   357190 TGTCAGCTGTTG-TC------AA----TTTTCTATCGCCTCCGT--CT-TATCAAgttcaatttattttattctgttttattttgtttctaCAGATgc-
i caeJap4.Scaffold17990 I 13 C 0

a score=1958.000000
s ce10.chrX              2952656 4 + 17718866 AGAA
s caeRem4.Crem_Contig15   422141 4 -  1794024 TGAG
i caeRem4.Crem_Contig15 C 0 I 214
s caeSp111.Scaffold582    428178 4 +   484378 TGAA
i caeSp111.Scaffold582  C 0 I 450
s caePb3.Scfld02_0       3595158 4 -  4147112 TGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   288598 4 +   357190 agaa
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694411 1229 - 21540570 I

a score=-40.000000
s ce10.chrX              2952660 9 + 17718866 ATCGGGATA
s caeJap4.Scaffold17990   288602 9 +   357190 agaagaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3595162 0 -  4147112 C
e cb4.chrX              17694411 1229 - 21540570 I
e caeSp111.Scaffold582    428182 450 +   484378 I
e caeRem4.Crem_Contig15   422145 214 -  1794024 I

a score=-13917.000000
s ce10.chrX              2952669 340 + 17718866 AAAATTATTTCAAAATTAT-GCGTGAGCAAAA---ATCGAATTTTTTAAGGAAGTGTCTCTTTTTCCTCTGTTAATCACTTT-TTTTTGTTTTTTAATTTCTA---TAAGTTTCAAAAAAAGGCACAGTTTTTG---TTGT----TTTTTgtgctag----tggggaaactgctttacagtatgcctatggcaccataattaccaaatatcataatgaaaaattcagaaaaattatataaattttatatgatttttAAACAGTATGGCACTTTTTTGGAAGTCGTCAAAAAAATT-------TTCCTT---------CAATTTGTAT-----TGACTATTTA-----TGTTTCAAATATTCAAACATT-GCAGA----------AATTTCAACATG
s caePb3.Scfld02_0       3595162 311 -  4147112 ----TTATTGCCTGTTTATTGCGTCAATGAGAGCCATCTGACAAATTTGAGacccatcttttttcttcaggttgaaaaatttatttctgatttgaaattATTAGAATGAAGTTTAACTGAAGAGATAATATTAACATTTGTactctttttattctgaaacttcGAGAAGTCGTTCTAAA-----------------TACTTAC-----------------AGTTCAGAGATTCT--------CTTGTCCGttctttttcca---------ttgattGTAAGT--TTGAACAAATT-------TCCCTTGTTGCTACTCAGTTACTATCGCAATGAACAGTTA-----agt----actttttgaacatt--caaa----------aaacctaacata
i caePb3.Scfld02_0      C 0 I 250
s caeJap4.Scaffold17990   288611 285 +   357190 aaacaaaccacaaatatgt-atgtatatgTGC---ATTGgcaaatttaataaa-----tttgtTTCGCCCattcattaattc-tttctgccc-----ttatta---ttattttt-----------tattatttcc--ttatcct-tttccactttaa----ttgtggtcacactttata---------------------tat-----------------AATTAAATGA------------TACATACCGTATTTAttaa---------actattgtgttt--tcaatcgacttgcgacaactccgc---------ccacttatatgcgcgcgaccactcgaacacagt----gatatttgaagagacgcagagataacggtgaatgcagactt-
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694411 1229 - 21540570 I
e caeSp111.Scaffold582    428182 450 +   484378 I
e caeRem4.Crem_Contig15   422145 214 -  1794024 I

a score=-1134.000000
s ce10.chrX              2953009 229 + 17718866 GCG--GCAGTTT----tctcaaaaagttgcaaaaacttagtaac----tgtcactttttagtgtcaataaaaattttcattgaaaatattttGAAAAGATGGAATGTATCAGGGGTGAGCGGCaaacaaatttttccggcaaattggcaaatagccggaattgaaatttccggcaaatctgcaaaccggcaaattgccaatttgccgaacggcaattGCCGCTTTGGTATGTATGGTTA
s caeJap4.Scaffold17990   288896 182 +   357190 gtgttgcgttttcatgtcgcaagacgat-tgaaaacacaatagcccggcatgcccttctaatttta--ggaaatttttaactaatagccatcgaa--------------tcgggccgtgtgccatatgcat------------ttggcgcacgtcccgaattcga---------------------tggctattagccttttt---caacggctattaccagttt----tccatggcta
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3595473 250 -  4147112 I
e cb4.chrX              17694411 1229 - 21540570 I
e caeSp111.Scaffold582    428182 450 +   484378 I
e caeRem4.Crem_Contig15   422145 214 -  1794024 I

a score=-12787.000000
s ce10.chrX              2953238 197 + 17718866 TTTTGACACC-----ATAAAGGTAGAGGTTTTAATAAATTCCCCTTCTGGCGCTGCGTTCTTTCGATATAAA------------------AAAATGTTTTTCGGTCAACTTAAAACCAAGAAGTAAGAGTTTT-----TTTTCAGATTACTaataaaat---------------------------ttttttct--gtttgaaaa------gtttta-----------ctatggtcattttagcatcata---ggagtagttttt----------aacattttc
s caePb3.Scfld02_0       3595723 201 -  4147112 ttttgacg------------gTTAGAA---CTATGAAATTCCCATTTCGAAGtaattttttcccttcatcAA----------------TGAAAATATGTGTCTG---ACTCA-----------TGAGaattat-----gtttcaaatttctctccATGT---------------------------GGTCCACCTAGTTTCCAAACATGTCGTTGTAG--AACATG--ATACGAgcatttgaatttcaaatttgaaagagCTTTTTTCCCAG--AAACGTTTTG
i caePb3.Scfld02_0      I 250 I 75
s caeJap4.Scaffold17990   289078 251 +   357190 -tcaggcaccgccatatacgcgcagaa---------aattc----tctgagaatg------tccagaatgaaaaagaagttgaagaatcgaaaacggctattagcc-attga-attcgTGACGTGATCGCTTTTAGCCGTTttgaatggctattagcttaaCTGCCGGATAATATCTCTTGTCTCATGTCTGTTTGGTGCGTCAA------GCTCTAATTAACATGAAAAGTAAGCAATAGAACAGCC-----GGGGAAGTTAGAGTACAAATTATACgtttgt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17694411 1229 - 21540570 I
e caeSp111.Scaffold582    428182 450 +   484378 I
e caeRem4.Crem_Contig15   422145 214 -  1794024 I

a score=-351.000000
s ce10.chrX              2953435 70 + 17718866 tccactggcgctcttctactACAGCAA---------TTTGGAAAAACCGTGTTTTACAAGGTTTGTATATTTTGCAGTG
s caeJap4.Scaffold17990   289329 72 +   357190 ttt-------ctcttttttttcagtaaaataataatttccaCAGGAACGCTTGTTAGACTGACTTTCAAGTTTGAagtt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3595924 75 -  4147112 I
e cb4.chrX              17694411 1229 - 21540570 I
e caeSp111.Scaffold582    428182 450 +   484378 I
e caeRem4.Crem_Contig15   422145 214 -  1794024 I

a score=-773.000000
s ce10.chrX              2953505 2 + 17718866 TT-
s cb4.chrX              17695640 2 - 21540570 tt-
i cb4.chrX              I 1229 C 0
s caeRem4.Crem_Contig15   422359 1 -  1794024 -t-
i caeRem4.Crem_Contig15 I 214 C 0
s caeJap4.Scaffold17990   289401 2 +   357190 -tc
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3595924 75 -  4147112 I
e caeSp111.Scaffold582    428182 450 +   484378 I

a score=1754.000000
s ce10.chrX              2953507 3 + 17718866 TTT
s cb4.chrX              17695642 3 - 21540570 ttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   422360 3 -  1794024 ttt
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3595999 3 -  4147112 ttt
i caePb3.Scfld02_0      I 75 C 0
s caeJap4.Scaffold17990   289403 3 +   357190 tct
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    428182 450 +   484378 I

a score=205059.000000
s ce10.chrX              2953510 282 + 17718866 -TTCCTGGCTTTCA--------CGG--AAGGATAAAATAAGAAAATTGAGAAGAAG-AGATGGTGTTTT-CCACTTCATTCGCGCGTATGTGAATCGCATCGAAACGATG-------TGAACTAGGC---GCGCG---CCCCGAGGGCAATGCTCTTCCAATTCGCGCAGTTTTTCTT---TGCGCGGCC--ATTCTTCTTTC-------------------------------------TTCCCTTCATAGTTACACTC-G-CACACCCCCCC-----CCCCCTCA-----------------------CATACCCACTCGCTT----------------------------------TCCCATCACTTCTTC-AATTTTTATGCAAGAGATGCACAAAACTGCTCCAATTTTT
s cb4.chrX              17695645 302 - 21540570 -ttccagTTTCCGA--------TGGTCCAGGATAAACTAAGAAAATTGGAAGGAAGAGAAGGGTGTTTT-CCACTTCATTCGCGCGTATGTGAATCGCATCGAAACAATGTGAATGATGAACTAG-----GCGCG---CCCCGAGGGCAATGCTCTTCCAATTCGcgcagttttttttc--ttcgggacccaattcttctttt--------------------------------ttttctt--cttcatagTTACACTT-G-CACACTTCTTCATTCACTCTtcca-----------------------acgtttttttttctc----------------------------------agccatcacttcttcaaatttccatgCAAGAGATGCACAAAACtgctccaattttt
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig15   422363 278 -  1794024 -tttccttttttga--------caa--caggataaaataagaaaaaaccgGCGGAGTAGATGGTGTTTTCCCACTTCATTCGCGCGTATGTGAATCGCGTCGAAACGATG-------TGAACTAGGC---GCGCG---CCCCGAGGGCAATGCTCTTCCAATTCGCGCAGTTTTTCTT---TGCGGGgcc--attcttctttt-------------------------------------tt--cttcatagtTACACTC-A-CACACTCCTTCATTCaccc--------------------------------ccttttttctt----------------------------------tcccatcacttcttc-aatttttatgcaAGAGATGCACAAAACTGCTCCAATTTTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    428632 272 +   484378 -tttttcgttttta--------cgG--AAGgataaaataagaaaaactggAGGAAG-AGAGGGTG-TTT-CCACTTTATTCGCGCGTATGTGAATCGCATCGAAACGATG-------TGAACTAGGC---GCGCG---CCCCGAGGGCAATGCTCTTCCAATTCGCGCAGTTTTTCTT---TGCGg--cc--attcttc-ttt-------------------------------------tt--cttcatagtTACACTC-G-CACACTTCGTCATtcaacccc------------------------------ccccccc-ctt----------------------------------tcccatcacttcttc-aatttttatgcAGGAGATGCACAAAACTGCTCCAA-TTTT
i caeSp111.Scaffold582  I 450 C 0
s caePb3.Scfld02_0       3596002 277 -  4147112 -tctctctttttta--------cgG--AAggataaaataagaaaaattggaggaag-aGAGTGTGTTTT-CCACTTCATTCGCGCGTATGTGAATCGCATCGAAACGATG-------TGAACTAGGC---GCGCG---CCCCGAGGGCAATGCTCTTCCAATTCGCGCAGTTTTTCTT---TGCgg--cc--attcttctttt-------------------------------------tt--cttcatagtTGCACTCGG-CACATTTCTTCattcaccccc------------------------------ccccccctttt----------------------------------tcccatcacttcttc-aatttttatgcaAGAGATGCACAAAACTGCTCCAATTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   289406 385 +   357190 ctctctctctctgcttATTCCTCtg--taaaaaacatttataaaat-----aGAATATGAGGGTGTTTT-CCACTTTATTCTCGCGTATGCGAATCGCATCAAAACGATGGGAA---TGAACTAGGCACGGCGCGGCCCCCCGAGGGCAATGCTCTTCCaattcgcgcagttttttttcttttcggactc--attcttctttttctccttctccttttttggtttttcttctattttttctt--cttcatagttacactc-gccacacttttttttttccctcctcctgcttcttcttcttcttcttcgtcttctcccttctcttcCCCACCGCTCCGCGCCTTTCCATTCTATTCCAGTCCCAtcttttgttc-aatttttattcaagAGATGCACAAAAT-------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-14568.000000
s ce10.chrX              2953792  82 + 17718866 GTGCTCCTCCCGTTTGTCCT-----CCTCTTCCCAAA--AAAAGCTG--------AGAACTTATATTGCTGTCCACGTGGGCAAAG---------GCTC---GCGCTTA
s caeRem4.Crem_Contig15   422641 100 -  1794024 GTGCTCCGCCcgttt-tcct-----ccttttttcaac--ttcgACTAAAGAAAGTAGGGGTTCTATTGCC-TCCACGTAAACGAAGATTCTCGGGACTAGGGGTTTTCA
i caeRem4.Crem_Contig15 C 0 I 13
s caeSp111.Scaffold582    428904  88 +   484378 Gtgctcctccttctt-ttttgctcGTCTTGGCCAACTTCTTAGATAG----CAAGAGGGGTTCTATTGCC-TTTACGTA----GATCT-------ACTC---GTTTTT-
i caeSp111.Scaffold582  C 0 I 12
s caePb3.Scfld02_0       3596279  87 -  4147112 GTGCTCCGCCTttat-tcct-----tcttttccaaag--TTAGACGT------GGAGGGGTTCTATTGCC-TCCACCTA----GAGCTCTTCAAGACTC---TTTTTTA
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17990   289791  25 +   357190 --------------------------------------------------GAGGTGGCAGCTAGAAAGTT----ACATA------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17695947  60 - 21540570 I

a score=56327.000000
s ce10.chrX              2953874 112 + 17718866 CTTTTGTTG-C----GCTCAACCCA------TTTTCACTCAATTAGGC-GGCACATC---------------TCTTT----TCTT----ACAC---------TGAGTGTCTGGAGTTTATACAAACCACTGATCATATT----CACTCCA-TTTTTATA-----CC
s cb4.chrX              17696007 146 - 21540570 TTTTTACTGAA----GCCC-ACCCA------TCTTCACTCGATTAGGCGGGCACATCTCGGGTGAGGgttttttttcgctattttttgtGCTTGC-----TATATGTGTCTGGGGTTCATACAAATCACTGATCATATTT---CAGACTC-TTTTTCTATCTTCCC
i cb4.chrX              I 60 C 0
s caeRem4.Crem_Contig15   422754 114 -  1794024 CTTTTGTTG-C----GCCC-ACCCA------TCTTCACTCGATTAGGC-GGcacatc--------------tttttc----tttcttgagCACGC-------TATGTGTCTGGGGTTCATACAAACCACTGAtcatattc---ca------tttttata-----cC
i caeRem4.Crem_Contig15 I 13 C 0
s caeSp111.Scaffold582    429004 124 +   484378 CTTTTGTTG-C----GGCC-ACCCA------TCTTCACTCGATTAGGC-GGCACATC---------------TCCTC----TTTCTCCGGCTCCT-------CATGTGTCTGGGGTTCATACAAACCACTGATCATATTCAGACACTCCA-TATTT-TA-CCCACC
i caeSp111.Scaffold582  I 12 C 0
s caePb3.Scfld02_0       3596381 119 -  4147112 CTTTTGTTG-C----GGCC-ACCCA------TCTTCACTCGATTAGGC-GGCACGTC---------------TCTTT----TTTCAT--GCTC-----------TGTGTCTGGGGTTCATACAAACCACTGATCATATTCAGACACTCTA-TTTTCATA-CCCACC
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   289816 127 +   357190 CATTTGTGG-CGGGAGCCC-ACCCACCGATGTCTTCACTCAATTAGGc-ggcacatt--------------tttttt----cggctt--GCTCGTCGCTTTTTGTGTGTTGGGGA-------AAAAGACTGATCATATC----CATTTGAGCCTTTATA-----TC
i caeJap4.Scaffold17990 C 0 I 776

a score=236.000000
s ce10.chrX              2953986 31 + 17718866 AAGAGCAATTTC-------TATCTTCCTTTTTT-TATTG
s cb4.chrX              17696153 29 - 21540570 A-----ACTTCAATTTAAGTATTTTTCTATATTG-----
i cb4.chrX              C 0 I 200
s caeRem4.Crem_Contig15   422868 22 -  1794024 G-----ACTTTC-------TATCTTCTCTTattg-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    429128 22 +   484378 A----CCatttc-------tatcttcttttatg------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3596500 21 -  4147112 A-----aatttc-------tatcttcttttATT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=5980.000000
s ce10.chrX              2954017 132 + 17718866 AAAAAAAAAAT--GGAATTTCATCTGATCAGCAGTTATTCTTCAGTTTTCCCAAAAAACACTTGTTTGGAGAAAATTTTTTCCCAATTCCCTCAAACATTCTTTTT-ACATA-----CTATCAGCTGTT---------------TTTTTTCTCTT
s caeRem4.Crem_Contig15   422890 109 -  1794024 ------gaatt--gaaattttatccGATCAGAATATATTTTC-------------GACGACTTGTTTATCGAc---------ccaacttttt-gaattttttgttacaCATGTTCTATCATCagctgtt---------------ttttctttttt
i caeRem4.Crem_Contig15 C 0 I 201
s caeSp111.Scaffold582    429150 105 +   484378 -----aaaatttagaGAGTTTTTACGATATGCATCT-TCCAC-------------AACGACTCGTTTGCCAAA---------TTGAGCTGCC-GAACTCTTTCTAA-ATATT-----CCATCAGCTGTT---------------CTTCATCGGTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3596521 120 -  4147112 -----GGAATT--GGAATATTATCCGATCAACGTTTAGTCAC-------------GACTACTTGTTTGTGAAA---------ACCAACTTTTGGAACTCTTTTTTA-ACATG-----CTCTCAGCTgttttctataatttcagcctCCCTagctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696182 200 - 21540570 I

a score=-314.000000
s ce10.chrX              2954149 2 + 17718866 TT-
s caeSp111.Scaffold582    429255 2 +   484378 tt-
i caeSp111.Scaffold582  C 0 I 129
s caePb3.Scfld02_0       3596641 3 -  4147112 ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696182 200 - 21540570 I
e caeRem4.Crem_Contig15   422999 201 -  1794024 I

a score=594.000000
s ce10.chrX              2954151 188 + 17718866 TCAAGGTTCTTCAGATGatgatagaaactggattgcaatgaccgttatactgtaaa---aaaatta-----taaaaaaatattatactt--------------ttaaaa---aaagattttgttctaattttgcaaaaaataaa-----------aataaaattttaaaataccgcgcaatcaagtgtcgtcatt-ttcgacatgtttgtgtttttctggtgttt
s caePb3.Scfld02_0       3596644 225 -  4147112 ggaaatttcaccTGGGAAACACggaatcagttttgaaaagcaCGTGAAactaaaaacccaaaattattttttcaatctacTTTTCACTTACTTTGTATATctgttaaaaaataaaagtctAGACCTCAATTTGTACAAGATTACTTCTGCAACTTAATCAAGTCTTGAGATCTCAATCAATCTCTTGTTGTTCTTgctcaatgttttctttttcttcttctactt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696182 200 - 21540570 I
e caeSp111.Scaffold582    429257 129 +   484378 I
e caeRem4.Crem_Contig15   422999 201 -  1794024 I

a score=0.000000
s ce10.chrX              2954339 458 + 17718866 cttgctgtttttttaaaaaatatatttgatgttggacacagtttgtcaaGAAACCTGCTAATCAGATAGAAATACAATAAAACTTCTAAAATTGGTATAAAAATCGATAATTTCATATGAAGTTATAATTTTTAAATAATACATTTCTGAAAATTTGACAATCTGTTTCACATCAGATATTAAAAAAAATTAACAAACTAATTAGTATAGTCTGAAAACGGTAAAAATCCGTTACTCGTTTGCGTGGAAATTCAAAAAATTTTTTATCCCATTTCTTTACCTTGTGCCAAATTGAAAAAAACCATATAAACTTTAGAAAAAAAAAAGAACTTTTTATTGAATTTTTTGAATTTTTTTACTATGAATTTTGGTCACTTTATTGTGCTACTCTACCTTTAAATATGTTTCATGCAAATATTTTTTTTTTTTTTGCATTCAAATTGCCAAATTTCACCTGC
e caePb3.Scfld02_0       3596869   0 -  4147112 C
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696182 200 - 21540570 I
e caeSp111.Scaffold582    429257 129 +   484378 I
e caeRem4.Crem_Contig15   422999 201 -  1794024 I

a score=629.000000
s ce10.chrX              2954797 48 + 17718866 AAAAAAAGTAAAAGTTTAATCAAAAACATAACAAAAAAATGCT---AAAAG
s cb4.chrX              17696382 51 - 21540570 aaaaagggaaaaagtcTAGACCTCAATTTTGCGCAAAATTACTGCGAAATT
i cb4.chrX              I 200 C 0
e caePb3.Scfld02_0       3596869  0 -  4147112 C
e caeJap4.Scaffold17990   289943 776 +   357190 I
e caeSp111.Scaffold582    429257 129 +   484378 I
e caeRem4.Crem_Contig15   422999 201 -  1794024 I

a score=8621.000000
s ce10.chrX              2954845 35 + 17718866 ATTTCCAAAATTTAATCAAATC--------TCCGTCTTAATCA
s cb4.chrX              17696433 33 - 21540570 ACTTTTGAAACTTAATCAAGTCACG----------CCCAATCa
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig15   423200 43 -  1794024 acttttgaaatttaatcAAGTCGAGAGATCTCATTCTCAATCA
i caeRem4.Crem_Contig15 I 201 C 0
s caeSp111.Scaffold582    429386 36 +   484378 ACTTTTGAAACTTAATCAAGTC-TGAGAT------CTCAATCA
i caeSp111.Scaffold582  I 129 C 0
e caePb3.Scfld02_0       3596869  0 -  4147112 C
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=-172.000000
s ce10.chrX              2954880 32 + 17718866 ATATTTTGCCGTCTGGATGCATTG-CCTAGAGT----------------
s caeRem4.Crem_Contig15   423243 35 -  1794024 ATCTCTTGTTGT-------CGTTGTCCCaatgtttttccttt-------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    429422 41 +   484378 ATCTCTTGTTGT-------GCTTG-CTCAATGTTTTctccctttctttt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3596869  0 -  4147112 C
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696466 35 - 21540570 I

a score=2023.000000
s ce10.chrX              2954912 7 + 17718866 TTTGATT
s cb4.chrX              17696501 7 - 21540570 TTCACTT
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig15   423278 7 -  1794024 tctacTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    429463 7 +   484378 tctactt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3596869 0 -  4147112 C
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=41999.000000
s ce10.chrX              2954919 65 + 17718866 CCAGAAACTAAATCATTTTATTCATGCGTCGCCGAGTTGA---------GCACTTTT-----------------TTGTTGCTT----TTTTTTAC
s cb4.chrX              17696508 85 - 21540570 CCAGAAACTAAACAATGTTATTTATGCATCGTAGAATCAGATT----------CTTCTTCGTTCGCCCACCCctcgattttcactttttttttgc
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig15   423285 89 -  1794024 CCAGAAACTAAATCATTTTATTTATGCATCGTAGAGTCGACTTTCGGCAGCACTCTATTCGATCGCCCACCc--cgatttcca----ttttttgc
i caeRem4.Crem_Contig15 C 0 I 21
s caeSp111.Scaffold582    429470 89 +   484378 ccAGAAGCtaaatcattttatttatgCATCGTAGAGTCGACTTTCGGCAGCACTCTTTTTGATCGCCCACCc--tgatttcca----ttttctgc
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3596869 89 -  4147112 ccagaaactaaatcattttattcatgCATCGTAGAGTCGACTTTCGGCAGCACTCTTCTTGATCGCCCACCc--cgatttcca----ttttttgc
i caePb3.Scfld02_0      C 0 I 75
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=-1663.000000
s ce10.chrX              2954984 15 + 17718866 CACCGTGAATA---------AAAA
s cb4.chrX              17696610 24 - 21540570 CACCGAACAAATcgagcgagaaaa
i cb4.chrX              I 17 I 74
s caeRem4.Crem_Contig15   423395 21 -  1794024 cactgaaaaaa---aaagaaaaaa
i caeRem4.Crem_Contig15 I 21 I 11
s caeSp111.Scaffold582    429565  8 +   484378 CATCATAA----------------
i caeSp111.Scaffold582  I 6 C 0
e caePb3.Scfld02_0       3596958 75 -  4147112 I
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=-3239.000000
s ce10.chrX              2954999 35 + 17718866 CCACCCTTGTGCTACGAAATTAATATCAATCGT------------CG----------------
s caeRem4.Crem_Contig15   423427 18 -  1794024 ---------------------------------------------cgaaaaaacaagaaCGCC
i caeRem4.Crem_Contig15 I 11 C 0
s caeSp111.Scaffold582    429573 59 +   484378 ----TGTCgagcaaagaaaagaaaatagatcgaagggagaaaaaacaaaaagacaagaaCGCT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3596958 75 -  4147112 I
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696634 74 - 21540570 I

a score=468.000000
s ce10.chrX              2955034 28 + 17718866 TTCTCATTGTATGCCGTTTAACTTTTGA-------
s caeRem4.Crem_Contig15   423445 18 -  1794024 TTCTCA----------TCAAACgtttga-------
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    429632 25 +   484378 TTctca----------tcaactttttttctcaata
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597033 25 -  4147112 TTCTCA----------TCTACTTTTTCTCCTaagt
i caePb3.Scfld02_0      I 75 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I
e cb4.chrX              17696634 74 - 21540570 I

a score=2022.000000
s ce10.chrX              2955062 5 + 17718866 -GAAAT---
s cb4.chrX              17696708 5 - 21540570 -AAAAT---
i cb4.chrX              I 74 C 0
s caeRem4.Crem_Contig15   423465 5 -  1794024 -aaaat---
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    429657 6 +   484378 gaaaat---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597058 9 -  4147112 gaaaataaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   289943 776 +   357190 I

a score=43952.000000
s ce10.chrX              2955067 52 + 17718866 GCAGTTGTTCCGGTTGCCATTAATAAACAATGACTGCTTGATTCGGAAATTT
s cb4.chrX              17696713 49 - 21540570 GGAGTTGTTCCGGTTGTCATTAATAAACAATG---GCTTGATTCGGAAATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   423470 46 -  1794024 agagCAGTTCCGGTTGTCATTAATAAACAATg---gcttgatttgaaaa---
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    429663 46 +   484378 gaagtaGTTCCGGTTGTCATTAATAAACAATG---ACttgattcgaaaa---
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597067 46 -  4147112 gaagTAGTTCCGGTTGTCATTAATAAACAATG---acttgatttgaaaa---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   290719 49 +   357190 GCAGTCCTCCCGTTTGTCATTAATACACAATG---AAttgattcaaaaattt
i caeJap4.Scaffold17990 I 776 I 167

a score=12259.000000
s ce10.chrX              2955119 108 + 17718866 A-------TTTAAAACGAG--------------CGAGCTGAGCACTCTCGCTTTTC------------TTTTTCGGCAATTCTTGCCATGTAATCCATCAAAACTACATGATTTTCCTGCTTGTTTCCGT--------T---CGTCATTTTT
s cb4.chrX              17696762 101 - 21540570 cctttcattttgaaaaaaaattctcttttcCGACAAGAACA-------TACACt-------------------------ttttt-tCATCTAATCCATCAT------ATCATTGTCCTGTCC----CTGT--------CAGCCatcattttt
i cb4.chrX              C 0 I 83
s caeRem4.Crem_Contig15   423516 114 -  1794024 --------tttgagaaaga------cCCGCCGGCGAGTAcacttcttttccatttc-----ttggCTCTTGTTC-GCAATTTTT-CCATCTAATTCATCATAACTACATCATTGTCCTGACa----gcat--------c-----tcattttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    429709 112 +   484378 --------tttggaGAGAC--------------TAagctcatttcatttctttctttcgttttGCCTATTTCTCTGCAATTTCT-CCATCTAATCCATCACAACTACATCATTTCAGTGTCA----Ccgt--------t-----tgattttt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597113 113 -  4147112 --------tttgaaaggac--------------CGGgcacatttcttttctttttt--------cttctattcccgcaattttt-tcATCTAATCCATCACAACTACATCATTGTTCTGTCAG---TCgttgattttct-----tgattttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290768 167 +   357190 I

a score=1213.000000
s ce10.chrX              2955227 3 + 17718866 CGA
s caeRem4.Crem_Contig15   423630 3 -  1794024 caa
i caeRem4.Crem_Contig15 C 0 I 142
s caeSp111.Scaffold582    429821 3 +   484378 caa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597226 3 -  4147112 cga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290768 167 +   357190 I
e cb4.chrX              17696863 83 - 21540570 I

a score=302.000000
s ce10.chrX              2955230 2 + 17718866 GT
s caeSp111.Scaffold582    429824 2 +   484378 at
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597229 2 -  4147112 AT
i caePb3.Scfld02_0      C 0 I 116
e caeJap4.Scaffold17990   290768 167 +   357190 I
e cb4.chrX              17696863 83 - 21540570 I
e caeRem4.Crem_Contig15   423633 142 -  1794024 I

a score=504.000000
s ce10.chrX              2955232 12 + 17718866 CTCCGCTTCTTT
s caeSp111.Scaffold582    429826  8 +   484378 ----gctttttt
i caeSp111.Scaffold582  C 0 I 103
e caePb3.Scfld02_0       3597231 116 -  4147112 I
e caeJap4.Scaffold17990   290768 167 +   357190 I
e cb4.chrX              17696863 83 - 21540570 I
e caeRem4.Crem_Contig15   423633 142 -  1794024 I

a score=0.000000
s ce10.chrX              2955244 428 + 17718866 TTTTTTAACTTTCGAAGCTTATCCTCCATTATTTAGCATTAATATTTATAAAAAGGTGTATGACAGCTGGTTGGAAAATTATTAAAAACCACAACTTTTCAAAAAAAAATTGAAAATTATTTATTTTGACGCAAAACGTGTTTTGTTAAAAACTAAATTTGCACCATTTTTTTGGAAGTCGTCGATCAAAAACAAATTTCCATTCAGTTTTTTGTTCTAGTAATGTTTAAAATATTTCCATTTCCACATTCTTGAGGTTTGGGTTTTCACAAAAATGGCGCACTTACCATTTTCGACTAGAAAAAGAAATTTAAAAAAAAATTCCAGATAATTCCATTTTTTCATATGATATTTAATATTTTTCCCCATTAGAAGTAGTCCACCTTTATTCATGTGTCATTCAAAATATTTTTTTTTAATTTCTCTGT
e caePb3.Scfld02_0       3597231 116 -  4147112 I
e caeJap4.Scaffold17990   290768 167 +   357190 I
e cb4.chrX              17696863  83 - 21540570 I
e caeSp111.Scaffold582    429834 103 +   484378 I
e caeRem4.Crem_Contig15   423633 142 -  1794024 I

a score=282.000000
s ce10.chrX              2955672 3 + 17718866 TGA
s caeJap4.Scaffold17990   290935 3 +   357190 tga
i caeJap4.Scaffold17990 I 167 C 0
e caePb3.Scfld02_0       3597231 116 -  4147112 I
e cb4.chrX              17696863 83 - 21540570 I
e caeSp111.Scaffold582    429834 103 +   484378 I
e caeRem4.Crem_Contig15   423633 142 -  1794024 I

a score=640.000000
s ce10.chrX              2955675 4 + 17718866 GAAA
s caePb3.Scfld02_0       3597347 4 -  4147112 ggag
i caePb3.Scfld02_0      I 116 C 0
s caeJap4.Scaffold17990   290938 4 +   357190 gaag
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17696863 83 - 21540570 I
e caeSp111.Scaffold582    429834 103 +   484378 I
e caeRem4.Crem_Contig15   423633 142 -  1794024 I

a score=1543.000000
s ce10.chrX              2955679 13 + 17718866 AAGCAACCTAAGA
s caeRem4.Crem_Contig15   423775 13 -  1794024 aagaaacctcaaa
i caeRem4.Crem_Contig15 I 142 I 2
s caeSp111.Scaffold582    429937 12 +   484378 aagaaaactt-ag
i caeSp111.Scaffold582  I 103 I 3
s caePb3.Scfld02_0       3597351 13 -  4147112 acgaaaactcggg
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   290942 13 +   357190 aaagaaatgaaga
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17696863 83 - 21540570 I

a score=172120.000000
s ce10.chrX              2955692 229 + 17718866 AAAAGAGAAAAAAGAGATGAAAAC--------TTTCGAAAAACTAAAACTTTC-ACCCATTTTGAATAATTCATAGTTCAAACTAGGTCCACCCAAAAA-----CCTTCTCATACATATTCGGTCACATGGAATTAATTGGCGACCAGATATTTGGGCG--------CCTCGAAGTTTATGCCT--------------GCTCTTCGTGAA------GCTCTCCTT--------------GAAAAGACGTCTTCTT-GACTTCCGCTCGCCTTCACATAAACAATTG
s cb4.chrX              17696946 272 - 21540570 AGGGAAGaaagttgtgaaaaaaaa--------gttttcaa-----cgaCTTTCAACCCATCTTGAATAATTTATAGTTCAAACCCAGTCCACCAAAAAGGACCTTCTTCTCATACATATTCGGTCACATGGAATTAATTGGCGACCAGATATTTGGTGGAAAGAGGCCTCCGAAGTTTACG-CTGGTCCTTTTTTCACTCTCTCTGTGAATGAAGGGCTCGCGCTCGTCACCGCGGGTTGAAAAGACGTCTTCTTCAACTTCCGCTCTCCTTCACATAAACAATTG
i cb4.chrX              I 83 C 0
s caeRem4.Crem_Contig15   423790 223 -  1794024 aaagaagtagcCGGagatgaaaaa--------ctttgaaa-------actttc-acccattttgaataatttataGTCCAAACCCAGTCCACCAAAAGA-----CCTTCTCATACATAATCGGTCACATGGAATTAATTGGCGACCAGATATTTGGGCG--------CCTCAAAGTTTATG-CT--------------TCTCTCTGTGAA------GCTCTCAGTGA------------AAAGAGACGTCTTCTT-GACTTCCGCTCCCCTTCACATAAACAATTG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    429952 221 +   484378 aaagaagaagtcgaagatgaaaaa---------tttgaaa-------actttc-acccattttgaataattcataGTTCAAACCCAGTCCACCAAGAGA-----CCTTCTCATACATATTCGGTCACATGGAATTAATTGGCGACCAGATATTTGGGCG--------CCTCGGAGTTTATG-CT--------------GCTCTCAGTGAA------GCTCTCCGT--------------GAAAAGACGTCTTCTTTGACTTCCGCTCCCATTCACATAAACAATTG
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3597367 220 -  4147112 aaagaagaagtcgaagatgaaaac---------ttcgaaa-------actttc-aCCCATTCTGAATAATTTATAGTTCAAACCCAGTCCTCCAAAAGA-----CCTTCTCATACATATTCGGTCACATGGAATTAATTGGCGACCAGATATTTGGGCG--------CCTCGGAGTTTATG-CT--------------GCTCTCCGGGAA------GCTTTCTGT--------------GAAAAGACGTCTTC-TCAACTTCCGCTCCCATTCACATAAACAATTG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   290955 194 +   357190 --agaagaagaagtagacgaaaaagataaaagctttaaaa-------actTTC-ACCTGCTCTAAATAATTCATGGTCCAAGTCGGTCTGAGCAAAGGA-----CCTTCTCATACATATCCGGTCACATGGAATCAATTGGTGACCAGATATTTGGGCA-----------------------CC---------------------GTGAG------TTT--------------------------ACGTCTTCTA-GACTTCCACTTGCCTTCACATAAACAATCG
i caeJap4.Scaffold17990 C 0 I 82

a score=27106.000000
s ce10.chrX              2955921 109 + 17718866 TCGACTCTTC---------CCTCTTTTCTTACAACTATCCAA--AACCTTC--CTC-TTATTTTAATCACAAGGCTTTTGACTATCCACTTGGTTATTTTAGGAAAGTAGTTTTAAAAAAATT
s cb4.chrX              17697218 114 - 21540570 TCGCATTTTTCTtcacttctttctctttttacaACTATGCAAACGACTTTCATTTCTTTAATTTAATCATAAGACTAGAGA--AGAAAGGAAGTTATTTTAAGTT--TC-----CAAAAGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   424013 101 -  1794024 Ccgcatttttct-------cttcacttctTACAACTATGCAA--gactttc--ttttttaatttaatcACAAGACTTGGGC---------GAGTTATTTTGAGTa--tagtgagagaaaaaga
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    430173  91 +   484378 CCGCCTTTCTTT-------CCCCCCTTCTTACAACTATCCAA--GACTTTC--CTTTTTAATTTAATCATGCGCCTCTAGG---------AAGTTATTTTGAGT------------CAAGAGC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3597587  86 -  4147112 ccgtcttttt------------cttttcttacaACTATCCAA--GTCTTTC--CTTTTTAATTTAATCATAAGACTTGAGG---------Aagttattttgaga------------aaagagc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   291149  82 +   357190 I

a score=-140.000000
s ce10.chrX              2956030 7 + 17718866 TGAAAAT
s cb4.chrX              17697332 7 - 21540570 AGAAACC
i cb4.chrX              C 0 I 125
s caeRem4.Crem_Contig15   424114 4 -  1794024 agag---
i caeRem4.Crem_Contig15 C 0 I 37
s caeSp111.Scaffold582    430264 7 +   484378 AGGagcc
i caeSp111.Scaffold582  C 0 I 37
s caePb3.Scfld02_0       3597673 7 -  4147112 aGGAGTC
i caePb3.Scfld02_0      C 0 I 47
s caeJap4.Scaffold17990   291231 7 +   357190 CGAAAAc
i caeJap4.Scaffold17990 I 82 C 0

a score=-8713.000000
s ce10.chrX              2956037  99 + 17718866 --CAAAAATCATGTCTC-GACAGAAATCCGGAGATAGTTTAAAGTTTAAATTCAAT---------AAAAGATCTCCACAACCG--------------AGTGAGCAAGTGAAGT-------------------TTTTTTTTTGAG
s caeRem4.Crem_Contig15   424155  70 -  1794024 --cagtGATGACG-----GATAGAAAtcc---------------tcaaaattcaatttgaa----agaag-------aaactgtGC-----------AGTGAGCAA------------------------------TCTTTGAG
i caeRem4.Crem_Contig15 I 37 I 20
s caeSp111.Scaffold582    430308  84 +   484378 --GAGTCATGatag----gagaaaaaact---------------ttcaaattcaattcaga----atgagaaaaccgaaattttctag-----tttaaGAGAGCAA------------------------------TCTTCGAG
i caeSp111.Scaffold582  I 37 I 18
s caePb3.Scfld02_0       3597727  87 -  4147112 --caatgatcata-----gaaaaaatact---------------tttaaaTTCAATCTAGACAAGAAATGAAACGCAAAACTGTGCAT-----TTTGAGTGTGCAA------------------------------TCTTTGAG
i caePb3.Scfld02_0      I 47 I 18
s caeJap4.Scaffold17990   291238 126 +   357190 caaagcaattttttttaggcgAGACGAcg---------------aagaaaaccaaaaaaaaa---agaaagaaagcgaATCTTCGCAGAAGCTGCTCACTGAGCACTTGAGCTCTCAACTTGAACcctcttattcttcttctac
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17697339 125 - 21540570 I

a score=105245.000000
s ce10.chrX              2956136 327 + 17718866 T-------------AAAATTGTATTACGAGTTCAGTT-----TTGATTGCGAACATTT-------------TCAACTCT-------TTCCAATAAAAG----------TTCTTTTT------------TGCAC-AATTGAGCTT--CTTTCA------------------TCTTGAAAAAAAG-----TCCGAGCAATTGAAGAAGTGTGGAGCAGCTAGAAGGAATTGCTCT------------------------CACAAATGGGTTTTTCTTCGGCTCGGCTC----TAACTCCAGGCCCACCAACTTCGACTCCAC--------CGGCTTCAGAACTCCC----------------TTCATTTCCGAAATCATTTTTTTT-CACACACCCATCCTC----TCCCCGAGGCACTGTTGCAATCCGC---TCTTACATGTCGC--TTTTTTGTTTAAATTTGCTAAGCTATGT----
s cb4.chrX              17697464 346 - 21540570 T-------------CAAATCTCATTACGAG------T-----TTGATTGCGAACTCTT-----GTGTCGAGTTGCCCTC-------CCGCAATAGAA----TCCCGCACTCTTTTTGCGTGATGATGATGCACTTCTTGGACTT--CTTCAC-----------------CCCAGTGAAAGTCG-----ACGCAGCAAC------AAT-TGAAGCAGCTAGAATGAATTGCCCT------------------------CACAAATGGGGTTTTT---------TCCT----CGACT-----------GGCTTCCCCATCCCAATAAAAATAACTTCAGAACTTCCTACTTtatgcgttttttttcttctcaaaatcatttttt---cacac-CATTCCCGC--CTTCCCCGAGGCAGTGTTGCAATCCGCTTATTTCTtgtccctcttttttttgcttaattTTAATGAAC----T----
i cb4.chrX              I 125 C 0
s caeRem4.Crem_Contig15   424245 339 -  1794024 T-------------AAAATTTCATTACCAGTTCAATT-----TTGATTgcgaactttt------tttcaatccgTCCTC---TGCTTTGCACtagaaaaattccag-----tttttgcg------TGATGCAC-TATTGAACTTCACTCCCT-----------------CCCCTTGAAAGAAG-----TCGCAGCAATTGAAGAAGTGTGGAGCAGCTAGAAAGAATTGCTCT------------------------CACAAATGGGTTTTCT--------GGCTT----CAACT------CCTCCAGCTCTCCCTCCCT-----GAGCGTCTTCAGAACTTCC----------------TTCCCTCtcgaaatcatttttt---cacacACCCATCCGC--TTCCCCCGAGGCAGTGTTGCAATCCGCTTCTTTTCTTCGTCac---tttttgtttaatttcaaTGAAC----T----
i caeRem4.Crem_Contig15 I 20 C 0
s caeSp111.Scaffold582    430410 344 +   484378 T-------------GAAATTCAGTTACGAGTTCAGTT-----TTGATTGCgaactctt-----ctc-----ttctccttgaGAGTTTCTCAGtataaaaa--------ttctttttgcG------TGATGCAC-TATTGAACTTCACTTCCACAAGCCTCTCCTCCCCTCCCCTTGAAAGAAG-----TCGCAGCAATTTAAGAAGTGTGGAGCAGCTAGAAAGAATTGCTCT------------------------CACAAATGGGTTTTTCTTC----TGGCTT---CCAACT------CCACCAGCTCCCTG-------------CGACTTCAGAACTTccc---------------tttcttctcaaaatcatttttttctcacac-cGCTTGC-------CCCCGAGGCAGTGTTGCAATCCGC---TCTTCTTCgtcac---tttttgtttaatttcAATGAAC----T----
i caeSp111.Scaffold582  I 18 C 0
s caePb3.Scfld02_0       3597832 346 -  4147112 TCCAATTCTCGTCATAAATTTCATTACGAGTTCGGTT-----TTGATTGCGAACTCTT-----CTTGCCAACTCTCCTT---------TAAgtataaaaattttct--ttttttttgcg------tgaTGCAC-TATTGAACTTCACTCCCA------------------CTCTTGAAAGAAG-----TCGCAGCAATTGAAGAAGTGTGGAGCAGCTAGAAAGAATTGCTCT------------------------CACAAATGGGTTTTTCTTC----TGGCTTCAACCAACT------CCAGCATCTCCCTC-------------CGACTTCAGAACTTCCC------------------cctctcaaaatcatttttttcacacac-CCCATCCGC---TTCCCCGAGGCAGTGTTGCAATCCGC---TCTTCTtcgtcac--ttttttgtttaatttcaaTGAAC----T----
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17990   291364 334 +   357190 -------------CAGAATTTAATTACGAGTTCAGTTCATTCTTGATTGCAAACTGCGCAGCACTCTAAATTTATTCCT-----------------------------TTCTCATCGTG---------CGCAC-TATTGAACTCCGCTCTTG-----------------------GAAAGTCGGCGGCACGCAGCAATTGAAGACGAATTGCACCATT--------CTTCTCTTCCCACACCCATCttttttttGCCCGCGGATGGGCGGTTTTTTGCGTCCGTTT----TGACT------TT-------------------------TAGCTTCAGAACTTTGCG--------------CCCAActccaaaataatttttttttctcac-atcATCCTGAGACTCCCTGAGGCAGTGTAGAAATCcgc------tttttgtttt--gtttaattttaattttaatgaaC----TATAT
i caeJap4.Scaffold17990 C 0 I 149

a score=20048.000000
s ce10.chrX              2956463 54 + 17718866 ACCTCTT-TGGGCAGTGCCCAGAGAAAAGA-------AG----TGCAAATT--GAGTAGAGAATAGTT
s cb4.chrX              17697810 61 - 21540570 ACCTTCT-AGGCGATTTTTGGGACCAAAGTGTaaacttt----tgaagttt--gaataGAGCGTAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   424584 60 -  1794024 ACCTCTT-TGGGACCTCTCAAGACCAAAGTGTAAAC-TG----TGAGGTTT--AAGTAGAGCGTAGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    430754 62 +   484378 ACCTCTT-TTGGGATTTCTAGGACCAAAGTGTAAAC-TG----TGACGTTTTGAAGTAGAGcgtagtt
i caeSp111.Scaffold582  C 0 I 212
s caePb3.Scfld02_0       3598178 65 -  4147112 ACCTCCCAGAGGGATTTCTGGGACCAAAGTGTAAAC-TGTTGTTGGCGTCT--AAATAGAGCGTagtt
i caePb3.Scfld02_0      C 0 I 264
e caeJap4.Scaffold17990   291698 149 +   357190 I

a score=-254.000000
s ce10.chrX              2956517 19 + 17718866 GTATATAGTTTCTATGAAG
s cb4.chrX              17697871 10 - 21540570 G---------TCTTTAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   424644 18 -  1794024 GTTTCTCG-TTTTCTGAAG
i caeRem4.Crem_Contig15 C 0 I 263
e caePb3.Scfld02_0       3598243 264 -  4147112 I
e caeJap4.Scaffold17990   291698 149 +   357190 I
e caeSp111.Scaffold582    430816 212 +   484378 I

a score=-323.000000
s ce10.chrX              2956536 95 + 17718866 TCGGTGTACTACCA--TTGTGTAGATTTTTTTCGGTGCTTGTACAGTGTACCTGAGCAAAAATTT----TTTTCCAATACGTTG----------TTCACTACTATCTTTTG
s cb4.chrX              17697881 89 - 21540570 ACG------TACCAAGCTGAGTGAATTgctttc--------taaaa--------atcaaaaagttgaaattttgcaagaaattggtttttcggGTCTACTCCCATTTTCCG
i cb4.chrX              C 0 I 149
e caePb3.Scfld02_0       3598243 264 -  4147112 I
e caeJap4.Scaffold17990   291698 149 +   357190 I
e caeSp111.Scaffold582    430816 212 +   484378 I
e caeRem4.Crem_Contig15   424662 263 -  1794024 I

a score=0.000000
s ce10.chrX              2956631 162 + 17718866 AAAATTATGTTTTAATTGAAACGTAAAATTGTTTAGCAATGTTAGGCCTAGAAAAACACTAATTCTAAGCCTTATATGGACAAAAAGAGTCACAAAAAATTTCAAACTGGTTAATATTTTTGGGCCATGTGTACTACACAAATGTCCTTTTTTTTTAAATAG
e caePb3.Scfld02_0       3598243 264 -  4147112 I
e caeJap4.Scaffold17990   291698 149 +   357190 I
e cb4.chrX              17697970 149 - 21540570 I
e caeSp111.Scaffold582    430816 212 +   484378 I
e caeRem4.Crem_Contig15   424662 263 -  1794024 I

a score=-1694.000000
s ce10.chrX              2956793 690 + 17718866  
s cb4.chrX              17698119 734 - 21540570  
i cb4.chrX              I 149 C 0
e caePb3.Scfld02_0       3598243 264 -  4147112 I
e caeJap4.Scaffold17990   291698 149 +   357190 I
e caeSp111.Scaffold582    430816 212 +   484378 I
e caeRem4.Crem_Contig15   424662 263 -  1794024 I

a score=611.000000
s ce10.chrX              2957483 3 + 17718866 CAT
s cb4.chrX              17698853 3 - 21540570 CGT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3598507 3 -  4147112 CGT
i caePb3.Scfld02_0      I 264 C 0
e caeJap4.Scaffold17990   291698 149 +   357190 I
e caeSp111.Scaffold582    430816 212 +   484378 I
e caeRem4.Crem_Contig15   424662 263 -  1794024 I

a score=23373.000000
s ce10.chrX              2957486  81 + 17718866 AATTTGTCATTCCAA-----------------CCAATTTATCAAACATA---TCTAAAATTCTCAATAT--CGCTTCCAAATCTTTC-AATATTTA--------------------GACGATCC
s cb4.chrX              17698856 124 - 21540570 GATTTCCTTTCCCAATTTGTCAAAGCCCTACCCCAATTCATCAAATCCGTCTTCCTGCAAATTCGATATCGCCTTTCAAAATCTTTCTGAtacttcttctctcttttccgcTCCTTTACAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   424925  85 -  1794024 AATTTGTCATCCCAA-----------------CCGATTTATCAAACAAA---TCCTGAAATCTCGATATCgccatcaaaaatctttttaataTTTC-------------------CAACAATCC
i caeRem4.Crem_Contig15 I 263 C 0
s caeSp111.Scaffold582    431028  83 +   484378 aatttgtcATCCAAA-----------------CCGATTTGTCAAATATT---TCCAGAAACCTCGATAT--CTGCtcaaaatctttttgatatttc-------------------caCCATTTC
i caeSp111.Scaffold582  I 212 C 0
s caePb3.Scfld02_0       3598510  74 -  4147112 AATTTATCATCCAAA-----------------CCGATTTGTCAAATATT---TCCTGGAGCCTCGATAT--CTTTTTAAAATCTCTTTGAT----------------------------ATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   291698 149 +   357190 I

a score=396596.000000
s ce10.chrX              2957567 605 + 17718866  
s cb4.chrX              17698980 703 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   425010 623 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    431111 600 +   484378  
i caeSp111.Scaffold582  C 0 I 25
s caePb3.Scfld02_0       3598584 613 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   291847 611 +   357190  
i caeJap4.Scaffold17990 I 149 C 0

a score=-5727.000000
s ce10.chrX              2958172 35 + 17718866 AATTGTGATTTTT----GTTTCA---AATacatttttaaaaa
s cb4.chrX              17699683 24 - 21540570 -----AACTCTCT-------------GGAATGTTtctaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   425633 24 -  1794024 -----aaattttt-------------aataagTGCTTAAACA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3599197 35 -  4147112 ---GAGCATTCCTC---GGTTCAGa-gaatagttttcagaaa
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17990   292458 37 +   357190 ----aagttttttcttaattttaaataaaaatttttcaaat-
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    431711 25 +   484378 I

a score=188.000000
s ce10.chrX              2958207 3 + 17718866 gat
s cb4.chrX              17699707 3 - 21540570 cgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   425657 3 -  1794024 AAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold17990   292495 3 +   357190 tat
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e caeSp111.Scaffold582    431711 25 +   484378 I

a score=819.000000
s ce10.chrX              2958210 3 + 17718866 ttt
s cb4.chrX              17699710 3 - 21540570 ttt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   292498 3 +   357190 ttt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e caeSp111.Scaffold582    431711 25 +   484378 I
e caeRem4.Crem_Contig15   425660 0 -  1794024 C

a score=211.000000
s ce10.chrX              2958213 5 + 17718866 ttgaa
s caeJap4.Scaffold17990   292501 5 +   357190 tcaaa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e cb4.chrX              17699713 0 - 21540570 C
e caeSp111.Scaffold582    431711 25 +   484378 I
e caeRem4.Crem_Contig15   425660 0 -  1794024 C

a score=0.000000
s ce10.chrX              2958218 451 + 17718866 atttccagtcaaaattttggcaaatcacaaattttttgaaaaatatgagctttcaagaaaatccagagcaatgtagcatgttctgaccactagaatgtctcaacacaactaattgaaacaaaattatagtacacaaattgtagaaaaaacaaatacatttttttggtcgatatccaaaattatgagtggcaaaacctaagtattaccacgttttgacTGCCAGTAACTTTTTTTAAATTGAACATTTTTTAGTTACTGTCAAAAAAGGACTCAGTTTGGACACACATTATATATGCTAAAAcattttaggtgtcggaacatgtgacattgctttggattcccttaatagcccataattttcaaaaaggtttagcaattagccaaaCCGGTTCTACTCTACTTTTAATACTATATTTTTAGCTTTAAAATTAAATTATTAGCAACTTTTAGG
e caePb3.Scfld02_0       3599232  10 -  4147112 I
e caeJap4.Scaffold17990   292506   0 +   357190 C
e cb4.chrX              17699713   0 - 21540570 C
e caeSp111.Scaffold582    431711  25 +   484378 I
e caeRem4.Crem_Contig15   425660   0 -  1794024 C

a score=25.000000
s ce10.chrX              2958669 6 + 17718866 AAATTT
s caeJap4.Scaffold17990   292506 5 +   357190 aaatt-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e cb4.chrX              17699713 0 - 21540570 C
e caeSp111.Scaffold582    431711 25 +   484378 I
e caeRem4.Crem_Contig15   425660 0 -  1794024 C

a score=0.000000
s ce10.chrX              2958675 1 + 17718866 A
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e caeJap4.Scaffold17990   292511 0 +   357190 C
e cb4.chrX              17699713 0 - 21540570 C
e caeSp111.Scaffold582    431711 25 +   484378 I
e caeRem4.Crem_Contig15   425660 0 -  1794024 C

a score=-2126.000000
s ce10.chrX              2958676 12 + 17718866 AACCGTTCTAAA
s caeRem4.Crem_Contig15   425660 10 -  1794024 GAcagt--ttga
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    431736 12 +   484378 AACAATACATGA
i caeSp111.Scaffold582  I 25 C 0
s caeJap4.Scaffold17990   292511  3 +   357190 ---att------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599232 10 -  4147112 I
e cb4.chrX              17699713  0 - 21540570 C

a score=910.000000
s ce10.chrX              2958688 1 + 17718866 T
s caeRem4.Crem_Contig15   425672 1 -  1794024 t
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    431748 1 +   484378 T
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3599242 1 -  4147112 T
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17990   292514 1 +   357190 t
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17699713 0 - 21540570 C

a score=285051.000000
s ce10.chrX              2958689 430 + 17718866 TTCAGTGTCAACCAGGTCTTGCTATGCAACAATTATATGATTTTCTTTATAAACCACCTACGAAGCTGATGCTTCTAACAGGATGTAGTCCCGTCACAACTGTAATTGCTGAAGCTGCGCCAGTGTGGAAACTAGTTGTGGTGCGTTATAATA-----CGTTTCTCAGAATTCCAGACCCTCAAA----TTATT-------------AATTCCAGTTATCATACGGTGGAAGCTCTCCTGCACTTTCCAATAGAAATCGATTCCCAACATTGTTCAGGACTCACCCGTCAGCGAATATGCAGAACCCCACGCGGTA------AGTTGGCAATT-ATG-AG---CAGTCTAAC----TTATTTT---------AAAATTTAAGAATTCACATAATGGAAAAATTCAAATGGAAAAGATTTACTATTTTGATGTCGGTTGAGGAAGTTTTCGTTACCACTGCAAAAGATCTGGAGGTG
s cb4.chrX              17699713 378 - 21540570 ttcagTGCCAACCCGGTCTCGCTATGCAACAATTATACGATTTCCTATATAAACCACCAACAAAACTGATGCTCCTAACCGGATGCAGTCCTGTAACTACCGTAATCGCCGAAGCTGCACCTGTATGGAAACTTGTTGT---------------------------------------------------------------------------GTTATCCTACGGAGGCAGTTCACCGGCTTTATCTAACAGGAACCGATTTCCAACGCTGTTCAGGACACATCCATCAGCCAATATGCAAAATCCAACTAGGCA------AGGCAACAATC-AAataa---tagttcaaaaaaattaattt-------------tttcaggattcatATTATGGAGAAGTTCAAATGGAAACGATTCACTATTTTGATGTCTGTCGAAGAAGTGTTCGTGACAACTGCCAAAGATTTAGAGGTA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig15   425673 424 -  1794024 ttcagtgccAACCAGGTCTCGCTATGCAACAATTATATGACTTCCTATATAAACCTCCAACAAAACTAATGCTACTCACAGGATGTAGTCCGGTTACTACTGTAATTGCGGAAGCTGCTCCCGTATGGAAACTTGTTGTGGTCTGTTAcaatg------gttactgtagactCTCAATTATATGT----ATGTT---------------TTTCAGTTATCATATGGCGGTAGCTCTCCTGCATTGTCTAACAGAAATCGGTTTCCCACATTATTCCGAACACATCCATCAGCCAACATGCAGAACCCTACCAGGTACTTGTCAGTTAGAAGTCTTGATTA---CAGTTCAAA------------------------TTTAAGAATTCATATTATGGAGAAATTCAAATGGAAAAGGTTTACAATTCTGATGTCAGTAGAAGAAGTTTTCGTCACTACTGCCAAAGACCTAGAGGTA
i caeRem4.Crem_Contig15 C 0 I 32
s caeSp111.Scaffold582    431749 416 +   484378 TTCAGTGTCAACCAGGTCTTGCTATGCAACAATTATACGATTTCCTGTACAAACCTCCAGTAAAGTTAATGTTACTAACAGGATGTAGTCCTGTCACAACAGTTATAGCAGAAGCAGCCCCTGTGTGGAAACTTGTTGTGGT---------------------------ACTGTGACTTTCAGAA----atattctctcaaaaacaaaacttcaGTTATCATATGGAGGCAGTTCACCGGCACTTTCAAACAGAAATCGTTTTCCAACTTTATTCAGAACACATCCATCAGCCAATATGCAAAACCCAACGAGGTA------GATGCATACTC-AGAAAA---TTGTTATgg----ttaattt-----------attttcagaattcatatAATGGAGAAGTTTAAATGGAAAAGATTCACTATTCTGATGTCGGTAGAAGAAGTATTTGTTACAACTGCAAAAGATCTTGA----
i caeSp111.Scaffold582  C 0 I 5
s caePb3.Scfld02_0       3599243 429 -  4147112 TTCAGTGCCAACCAGGTCTTGCTATGCAACAATTATACGATTTTCTATACAAACCACCTACAAAACTAATGCTGCTAGCGGGATGTAGTCCGGTAACCACCGTAATTGCGGAAGCTGCTCCAGTATGGAATCTCGTTGTGGT---------------------------ATTTCCAATCTTAGAGCTTCATGTTGAaacaattccaaattttcagctttcataTGGTGGCAGTTCTCCAGCTCTGTCCAACAGAAACCGATTTCCAACACTGTTCAGAACTCATCCATCTGCCAACATGCAAAACCCAACAAGGTATGG---AAAATACAAAC-AGACAATCTTTTCTGAAG----TTAATTT-----------GATTT-AGAATACATATaatggaaaagttcaaatggaAAAGGTTCACGATTCTGATGTCTGTAGAAGAGGTGTTTGTCACCACTGCCAAAGATCTTGAGGTG
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold17990   292515 446 +   357190 ttcagtgtCAGCCTGGTCTCGCTATGCAACAATTATACGATTTTTTATACAAACCACCAACTAAACTTATGCTTCTCACTGGATGTAGCCCGGTTACTACAGTAATCGCAGAAGCCGCTCCCGTGTGGAAGCTTGTTGTGGTAATTAATCATTTTGAATGTGCTTTACGATTAGTAACTTTTCAA----ATACT------------TTTTTGCAGTTATCATATGGAGGTAGTTCTCCTGCATTATCAAATAGAAATAGGTTTCCAACTTTATTCCGAACCCATCCTTCGGCCAATATGCAAAATCCTACTAGGTTTGA---AATATTGAAAT-ATG-CA---CATTTCACA----AAAATCTCTGTTATTGCAAATTTTAGAATCCATAtaatggaaaaattcaaatggaaacgGTTCACTATCTTGATGTCTGTAGAAGAAGTATTTGTGACCACTGCAAAAGATCTGGAAG--
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              2959119 40 + 17718866 AGTGAAAAATTTTCGGAACTTTTTCTCATATGAACACTTA
e caePb3.Scfld02_0       3599672 40 -  4147112 I
e caeJap4.Scaffold17990   292961  0 +   357190 C
e cb4.chrX              17700091 33 - 21540570 I
e caeSp111.Scaffold582    432165  5 +   484378 I
e caeRem4.Crem_Contig15   426097 32 -  1794024 I

a score=106573.000000
s ce10.chrX              2959159 226 + 17718866 TATTTTAGGCGATTGCACGAAAAAAAGGTATTAAAGTAGATCGGCAAAGTTTTTACGGGGACCCAACTGATGCGATGAAGACTCTACAACGCCAAGATGCTAGAATTATAGTCGGATTGTTTTATGTAACTGAAGCTAGGAAAGTACTGTGTCAGGTAAAA------AGAAATTGTATTTCTGGGtacactcaaaataataaaactaagtggccccgctttttttttcggaa
s cb4.chrX              17700124 153 - 21540570 tatttaaggCTATCGCtaggaaaaaaggaatccGCGTAGACCGACAAAGTTTCTATGGTGACCCAACGGATGCGATGAAAACGCTGCAGCGTCAAGACGCCAGGATAATTGTTGGATTGTTCTATGTGACAGAGGCGAGAAAGGTTTTGTGCC-------------------------------------------------------------------------------
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig15   426129 173 -  1794024 TACTTTAGGCTCTTGcaaggaaaaaaggaattagAGTGGATCGTCAAAGTTTCTATGGTGACCCAACCGACGCCATGAAAACTCTACAACGCCAAGATGCTAGAATAATAGTTGGATTGTTTTACGTTACAGAAGCAAGAAAAGTTTTGTGTCAGGtaaa------------------tcttgaatttcag-----------------------------------------
i caeRem4.Crem_Contig15 I 32 C 0
s caeSp111.Scaffold582    432170 149 +   484378 ------------TCGCAAGGAAGAAAGGTATTCGAGTAGATCGGCAAAGTTTTTATGGAGATCCGACTGATGCAATGAAGACTCTTCAACGCCAAGATGCTAGAATAATAGTCGGACTGTTTTATGTAACAGAAGCTAGAAAAGTGTTGTGTC----AAG------------------CTT-------------------------------------------------AT
i caeSp111.Scaffold582  I 5 C 0
s caePb3.Scfld02_0       3599712 183 -  4147112 TTTTCCAGTCAATCGCTAGaaaaaaaGGCATTCGAGTAGACCGCCAGAGTTTCTACGGAGATCCCGCAGATGCAATCAAAACTCTACAACGCCAAGATGCTAGAATTATAGTAGGATTATTTTATGTCACAGAAGCCAGGAAAGTGCTATGTCAGGTAAG------------------CTTTATATGCAATTGATATAA-------------------------------AA
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17990   292961 187 +   357190 ---------CACTCGCAAGAAAGAAGGGTATCAAAGTTGACCGGCAAAGTTTCTACGGTGATCCTGTGGATGCAATGAAGACACTTCAACGACAAGACGCTCGAATTATCATTGGATTGTTTTATGTCACAGAAGCTAGAAAAGTATTGTGTCAGGtatgaaaaacgaaaaaaaaaatttttttttttttttggaa------------------------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-3434.000000
s ce10.chrX              2959385 64 + 17718866 aatcatgagcaaaaattgggactccaacaaatttcagccgccgacatttcacaagttccgcgcc
s caeSp111.Scaffold582    432319  8 +   484378 CATCATGG--------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3599895  8 -  4147112 GATCTTGT--------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   293148  0 +   357190 C
e cb4.chrX              17700277  0 - 21540570 C
e caeRem4.Crem_Contig15   426302  0 -  1794024 C

a score=-5257.000000
s ce10.chrX              2959449 43 + 17718866 ccactttgtt--taacttgctgtgggcgtggcgagttgtcccacc
s caeRem4.Crem_Contig15   426302  5 -  1794024 -----ttatt-----------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432327  8 +   484378 ----TTTGTATG---------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3599903  6 -  4147112 ----CTTGTC-----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   293148  0 +   357190 C
e cb4.chrX              17700277  0 - 21540570 C

a score=-4069.000000
s ce10.chrX              2959492 63 + 17718866 cgttaagcaaagtggagcgcggaacgtgaaatgtcggctgctgatgttggttggggtcccaat
s caeRem4.Crem_Contig15   426307  2 -  1794024 ----------------------------------cG---------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432335  4 +   484378 --------------------------------GTCG---------------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3599909  0 -  4147112 C
e caeJap4.Scaffold17990   293148  0 +   357190 C
e cb4.chrX              17700277  0 - 21540570 C

a score=-8679.000000
s ce10.chrX              2959555 71 + 17718866 ttttgAATATTGTTACAAGTGTTACAAGTACATGTGTTGGTTTAACCTTGAGTTCATATTTGTAAGTTTAT
s caeRem4.Crem_Contig15   426309 18 -  1794024 ----------------------TACA---ATATAAAATGTTAC----------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432339 21 +   484378 -----------------------ACG---ATATGTGTGGTTTT------------------------TTAT
i caeSp111.Scaffold582  C 0 C 0
s caeJap4.Scaffold17990   293148 19 +   357190 ------------------tttttaaa---atttaaatttc-------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3599909  0 -  4147112 C
e cb4.chrX              17700277  0 - 21540570 C

a score=93794.000000
s ce10.chrX              2959626 119 + 17718866 AGGCGTATCACCATGGATTGTACGGTCGTCGATACGTTTGGTTTTTTATTGGTTGGTATGCGGACACTTGGTATATTCCACCCCCAGAAGAGCATTTGAATTGTACCGCCGAGCAGGTG
s cb4.chrX              17700277 119 - 21540570 AGGCCTACCATCATGGCTTGTATGGTCGAAGATatgtttggttttttattgGATGGTACGCCGACACCTGGTACTACCCACCACCGGAAGAACATTTGAATTGTACGGCGGAGCAGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   426327 119 -  1794024 AGGCATACCATAACGGATTGTATGGGCGTCGGTATGTTTGGTTTTTCATTGGTTGGTATGCGGACACATGGTATTACCCACCACCAGAAGAGCATCTGAACTGTACTGCAGAACAGGTT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432360  70 +   484378 -------------------------------------------------CGGATGGTATGCTGATACATGGTATATTCCACCACCAGAAGAACATTTGAACTGTACTGCTGAACAGGTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3599909 119 -  4147112 AGGCTTACCATCATGGATTGTATGGACGGAGGTATGTATGGTTTTTTATCGGATGGTACGCTGACACTTGGTATATTCCACCACCTGAGGAACACTTGAATTGCACTGCCGAACAAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   293167 119 +   357190 aggCGTACCACCATGGATTGTATGGTCGTCGTTATGTGTGGTTTTTCATTGGCTGGTACGCTGATACTTGGTATATTCCATCCCCTGAAGAGCACTTGAACTGTACTGCCGAGCAGGTA
i caeJap4.Scaffold17990 C 0 I 44

a score=-11083.000000
s ce10.chrX              2959745 33 + 17718866 A----ATC----CCGTTACTATA-TAGA---AATTTAAAACAAGA
s cb4.chrX              17700396 40 - 21540570 TGGAATCTATAATTATTTATTAT-TAC----CTCCAACACAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   426446 38 -  1794024 T----CCTAT--TTGTTCattat-ttcaatgtttctatGATAAGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432430 33 +   484378 A----ACC----TGGACTGTATTACAC----ATcttaaaatgaga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3600028 30 -  4147112 T----GTT----TCGCTTTTCAT-CAG----GTCTC--AATGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   293286 44 +   357190 I

a score=502025.000000
s ce10.chrX              2959778 782 + 17718866  
s cb4.chrX              17700436 586 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   426484 578 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    432463 576 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3600058 586 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   293330 647 +   357190  
i caeJap4.Scaffold17990 I 44 C 0

a score=3718.000000
s ce10.chrX              2960560 5 + 17718866 AGGTA
s cb4.chrX              17701022 5 - 21540570 AAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   427062 5 -  1794024 AGGTA
i caeRem4.Crem_Contig15 C 0 I 18
s caePb3.Scfld02_0       3600644 5 -  4147112 Aggta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   293977 5 +   357190 AGGTA
i caeJap4.Scaffold17990 C 0 I 1394
e caeSp111.Scaffold582    433039 0 +   484378 C

a score=-527.000000
s ce10.chrX              2960565 3 + 17718866 AAA-
s cb4.chrX              17701027 3 - 21540570 AGA-
i cb4.chrX              C 0 I 988
s caePb3.Scfld02_0       3600649 3 -  4147112 -aac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   293982 1394 +   357190 I
e caeSp111.Scaffold582    433039 0 +   484378 C
e caeRem4.Crem_Contig15   427067 18 -  1794024 I

a score=191.000000
s ce10.chrX              2960568 2 + 17718866 AC
s caePb3.Scfld02_0       3600652 2 -  4147112 ac
i caePb3.Scfld02_0      C 0 I 149
e caeJap4.Scaffold17990   293982 1394 +   357190 I
e cb4.chrX              17701030 988 - 21540570 I
e caeSp111.Scaffold582    433039 0 +   484378 C
e caeRem4.Crem_Contig15   427067 18 -  1794024 I

a score=0.000000
s ce10.chrX              2960570 728 + 17718866  
e caePb3.Scfld02_0       3600654 149 -  4147112 I
e caeJap4.Scaffold17990   293982 1394 +   357190 I
e cb4.chrX              17701030 988 - 21540570 I
e caeSp111.Scaffold582    433039   0 +   484378 C
e caeRem4.Crem_Contig15   427067  18 -  1794024 I

a score=364.000000
s ce10.chrX              2961298 4 + 17718866 AATT
s cb4.chrX              17702018 4 - 21540570 aatt
i cb4.chrX              I 988 C 0
e caePb3.Scfld02_0       3600654 149 -  4147112 I
e caeJap4.Scaffold17990   293982 1394 +   357190 I
e caeSp111.Scaffold582    433039 0 +   484378 C
e caeRem4.Crem_Contig15   427067 18 -  1794024 I

a score=151.000000
s ce10.chrX              2961302 16 + 17718866 CTTATTCTGATTTTTT
s cb4.chrX              17702022 15 - 21540570 -ttttttctaatatcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   427085 16 -  1794024 CTTATAGAGAATatgt
i caeRem4.Crem_Contig15 I 18 C 0
e caePb3.Scfld02_0       3600654 149 -  4147112 I
e caeJap4.Scaffold17990   293982 1394 +   357190 I
e caeSp111.Scaffold582    433039  0 +   484378 C

a score=-1245.000000
s ce10.chrX              2961318 3 + 17718866 -AAT
s cb4.chrX              17702037 3 - 21540570 -CCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   427101 3 -  1794024 -aat
i caeRem4.Crem_Contig15 C 0 C 0
s caeJap4.Scaffold17990   295376 3 +   357190 aaa-
i caeJap4.Scaffold17990 I 1394 C 0
e caePb3.Scfld02_0       3600654 149 -  4147112 I
e caeSp111.Scaffold582    433039 0 +   484378 C

a score=2351.000000
s ce10.chrX              2961321 4 + 17718866 TTTC
s cb4.chrX              17702041 4 - 21540570 TTTC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig15   427104 4 -  1794024 tttc
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3600803 4 -  4147112 TTGC
i caePb3.Scfld02_0      I 149 C 0
s caeJap4.Scaffold17990   295379 4 +   357190 ttac
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold582    433039 0 +   484378 C

a score=189757.000000
s ce10.chrX              2961325 287 + 17718866 AGTTCTACTATCCTACAATACTTTTCGCAGTTCTTGGCATTGCTGCATGTGTCTTCATTTACCTTTTTACACAAAAACATCACGAACGATTGTAAGTTCTTTTATCATTTTGATATTCTTTCAT---AAAACTTTTG----T--------TCCAGAATTATCTTCCAATCCCAGCCGGAATGCAATAACATTCTACTTATAGGGTGCTCGTTATGCCTTTTTTCTCTTTTCCTCATCGGTCTTCCTTCCGATGATATTTCAATTTCAGAATCTCTTTTTCCACTCCTCTGTCATGTGAGTCA
s cb4.chrX              17702045 284 - 21540570 AGTTCTACTACCCCACAATATTCTTCTCAGTTCTCGGAATTCTTGCCTGTGTACTTATCTATATATTTACTCAAAAACATCGCGAACGATTgtgagttctttttttcctt---tattttctTTA---GAAATGCATA----T--------TTCAGAGTGATTTTCCAATCTCAACCAGAATGCAATAATATTCTACTCATCGGGTGCTCCTTATGCCTTTTCTCACTATTCTTGATCGGTCTTCCGTCCGATGACATTTCCGTTCCCGAATCTCTATTTCCATTCCTCTGTCATGTatgtaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   427108 281 -  1794024 agttctattATCCAACAATACTGTTCTCGGTTCTCGGAATATTGGCTTGTATCCTTATATACGTATTCACTCAAAAACATCACGAACGATTGTAAGTCA-------CTcc---tacttgaaaaa---aaattaaataaaact--------tACAGAGTAATTTTCCAATCTCAACCAGAATGCAATAACATTCTCCTTGTCGGGTGCtctctttgtcttttttctcttttcctcatcGGACTACCGTCTGATGACATCTCAGTTCCAGAATCTCTATTTCCATTCCTTTGTCATGTGAGTTA
i caeRem4.Crem_Contig15 C 0 I 12
s caeSp111.Scaffold582    433039 280 +   484378 AGTTTTATTATCCTACgttattcttttcaattattgGAATCATTGCTTGTTTAGTCATCTActttttcactcaaaaacaTCGAGAACGATTGTGAGTCCTG-----ACTC---AATACGTGAAC--TAATTCGAATC----T--------TTCAGAGTTATATTTCAATCTCAACCAGAATGCAATAATATTCTCCTCATCGGGTGCTCACtgtgtcttttttctctctttttcgttgGACTGCCATCAGACGATATTTCAATTCCAGAGTCTCTATTTCCATTCCTATGTCATgtaattca
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3600807 289 -  4147112 AGTTCTACTATCCAACAATTCTATTCTCGGTGCTTGGAATTGCTGCTTGCGTCCTTATCTATCTCTTCACTCAAAAACATCGCGAACGATTGTGAGTTCTG------TTT---TGTTCATAAACCtcagttttcata----ttttcggtATTCAGAATAATCTTCCAATCACAACCAGAATGCAATAATATTCTTCTCATCGGGTGCTCTATGTgtctattttctcttttcctgaTCGGACTGCCCTCGGACGATATCTCAATTCCAGAATCTCTGTTTCCATTCCTCTGTCATGTAAGatt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   295383 283 +   357190 agttttacTATCCGACGGTTCTTTTCGCTATTCTTGGAATAGCAGCCTGCTTCGTTATTTATTTGTTCACAAATAAACATCGAGATAGATTgtaaagttttgaattttgc---tgaacacaaaatttaaatttt-------t--------ttcagaataattCTTCAATCCCAACCAGAATGCAACAATCTGTTACTTGTTGGATGCTCACTCTGCttattttcgctttttcttATAGGCCTGCCATCTGATGATATTTTCATTCCAGATtcagttttttcaattttatgtcATGTAAGCA-
i caeJap4.Scaffold17990 C 0 C 0

a score=-1620.000000
s ce10.chrX              2961612 3 + 17718866 AAC-
s cb4.chrX              17702330 2 - 21540570 aa--
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold582    433320 2 +   484378 aa--
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3601097 2 -  4147112 aa--
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold17990   295666 3 +   357190 AA-C
i caeJap4.Scaffold17990 C 0 I 10
e caeRem4.Crem_Contig15   427389 12 -  1794024 I

a score=1092.000000
s ce10.chrX              2961615 4 + 17718866 TTTT
s cb4.chrX              17702332 4 - 21540570 tttt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3601100 4 -  4147112 tttt
i caePb3.Scfld02_0      I 1 I 29
e caeJap4.Scaffold17990   295669 10 +   357190 I
e caeSp111.Scaffold582    433322 0 +   484378 C
e caeRem4.Crem_Contig15   427389 12 -  1794024 I

a score=29.000000
s ce10.chrX              2961619 3 + 17718866 AGA
s cb4.chrX              17702336 3 - 21540570 gaa
i cb4.chrX              C 0 I 23
e caePb3.Scfld02_0       3601104 29 -  4147112 I
e caeJap4.Scaffold17990   295669 10 +   357190 I
e caeSp111.Scaffold582    433322 0 +   484378 C
e caeRem4.Crem_Contig15   427389 12 -  1794024 I

a score=0.000000
s ce10.chrX              2961622 898 + 17718866  
e caePb3.Scfld02_0       3601104  29 -  4147112 I
e caeJap4.Scaffold17990   295669  10 +   357190 I
e cb4.chrX              17702339  23 - 21540570 I
e caeSp111.Scaffold582    433322   0 +   484378 C
e caeRem4.Crem_Contig15   427389  12 -  1794024 I

a score=341.000000
s ce10.chrX              2962520 6 + 17718866 TTTTAG
s caeSp111.Scaffold582    433322 6 +   484378 tttttg
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3601104 29 -  4147112 I
e caeJap4.Scaffold17990   295669 10 +   357190 I
e cb4.chrX              17702339 23 - 21540570 I
e caeRem4.Crem_Contig15   427389 12 -  1794024 I

a score=573.000000
s ce10.chrX              2962526 2 + 17718866 CA
s caeRem4.Crem_Contig15   427401 2 -  1794024 CA
i caeRem4.Crem_Contig15 I 12 C 0
s caeSp111.Scaffold582    433328 2 +   484378 ca
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3601104 29 -  4147112 I
e caeJap4.Scaffold17990   295669 10 +   357190 I
e cb4.chrX              17702339 23 - 21540570 I

a score=-1542.000000
s ce10.chrX              2962528 16 + 17718866 ATTTGAAAAACCCCAT
s caeRem4.Crem_Contig15   427403 16 -  1794024 ATTGTGGAATTCGAAT
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    433330 15 +   484378 TTTCCAACAATTGAA-
i caeSp111.Scaffold582  C 0 I 2
s caeJap4.Scaffold17990   295679 16 +   357190 ATTAAAAAAGTTTCTA
i caeJap4.Scaffold17990 I 10 C 0
e caePb3.Scfld02_0       3601104 29 -  4147112 I
e cb4.chrX              17702339 23 - 21540570 I

a score=-369.000000
s ce10.chrX              2962544 2 + 17718866 AT-
s caeJap4.Scaffold17990   295695 2 +   357190 -TT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3601104 29 -  4147112 I
e cb4.chrX              17702339 23 - 21540570 I
e caeSp111.Scaffold582    433345 2 +   484378 I
e caeRem4.Crem_Contig15   427419 2 -  1794024 I

a score=172157.000000
s ce10.chrX              2962546 393 + 17718866 TCCAGGCTCGTGTCACTATATTACTTTTTGGGTTTACATTTGCTTATGGGTCTATGTTTGCGAAAGTTTGGATTGTCCATCGAATGGGCGCAACTGAAAATCAGCAATTGGCAAGTCGCCAGAAAGACGAGGTGAGTAATGTTGTATTTTGATTCGGGTCCCTTAT----GTTATCATTTTCTCATTCACAAAT--TATTATTCTGGGTACTTT--AATTTGAACAAATCACACATCGTCTTTTTGTCA--ATTCCAGTTAAAACCATTATTGAGTAACTTCTCCGAAAAGGTAAG-TGACGAATGGGAATGAAACAATTTCGA------AGAGCAAATATG------TAGCATT-TGGAT-----CGGAGAAAATGAGC------TTTTT---TAGA-TTTTTATTTTC--CTATCAGTCCCGTGC-AGATAAA
s cb4.chrX              17702362 347 - 21540570 TTTAGGCTCGTGTTACTATTCTCCTTTTTGGGTTCACTTTTGCTTATGGGTCTATGTTTGCGAAAGTTTGGATTGTTCATCGGATGGGTGCTACGGAAAATCAGCAGCTGGCAAGTCGGCAAAAAGACGAGGTTTGTGA----------------ATAActgaaat----ctcaaaagttCTAC-----CTCATCCCATCCATATAATTTCTAC-----------------CACTTC--CCTCTTATCACCATTCCAGTTAAAACCATTACTGAGTAACTTCTCCGAGAAGGTAAGTTTAAGACGGAGGCCCGAATACTCTGAT------------------------TAGCG--------------GGAGAGAACCAGCgatctattttttgata-----cctatcTCTTGATATCTGTCTTGTGA-AGAGATT
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig15   427421 376 -  1794024 TGCAGGCTCGTGTATCTATTCTTCTATTTGGGTTTACATTTGCTTATGGGTCTATGTTTGCAAAAGTTTGGATTGTCCATCGGATGGGTGCAACTGAGAATCAACAGTTGGCTAGTAGACAGAAAGACGAGGTAAGTGATATAAAAT--------ATGTCTATCCC----TTGAAAATTCCCAC-----TTCAT--CATTATATTAATTTACTT-----------------CATCTCGTACTCTCATCATAATTCCAGTTAAAACCATTATTGAGTAACTTCTCCGAGAAGGTAAG-TTAAGAATGAGAATGAAACGATTCCAT----TCAAA-CAAATCAACTTATCTAGCGTT-TGAAT-----CGGAGAAAACAAGc------tttttttataga--ttttattTCT--ATCACTGTCCTGTGA-AGAAAAG
i caeRem4.Crem_Contig15 I 2 C 0
s caeSp111.Scaffold582    433347 372 +   484378 TTCAGACTCGTGTCACTATGCTATTATTTGGGTTTACATTTGCTTATGGGTCTATGTTTGCAAAAGTTTGGATCGTTCATCGGATGGGTGCAACCGAAAATCAACAGCTAGCCAGTAGACAGAAAGACGAGGTGAGAACATT-------------GAAACAATTATTCGGTTGAAATCTTCACT-----CATGT--CATCACTGATCCTTATTT-----------------TCCCCCATTTCATCACAACCATTCCAGTTAAAACCATTATTGAGTAACTTCTCTGAAAAGGTAAG-TtaagaatgagaatgaagcAGTTTTAT----TAAACGCAACTGAACT----TAGCGTT-TGAATC---CCTTACAAAAACAGC------TTTCT---taga--tttcatttct--atttctgtCTCGTGGAAGAAACA
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3601133 353 -  4147112 TTCAGGCTCGTGTTACTATTTTACTTTTTGGGTTTACATTTGCTTATGGGTCTATGTTTGCAAAAGTTTGGATCGTTCATCGGATGGGTGCTACTGAAAATCAGCAGTTAGCAAGTAGGCAGAAAGACGAGGTGAGTAACTTATCC---------AAATCCAAAGTTC--TTGAA---TTCATC-----CACAT--TATCACTCTTGGTTAATC-----------------CCCCTCATATTCTCACAATAATTCCAGTTAAAACCATTATTGAGTAACTTCTCCGAAAAGGTAAG--TAAGAATG----------AATTTCAT----TCAAAGCAACTGAA---------CGTT-TGAAAT---CCGGAGATAACCAGC------TTTC----Taga--cttttttcta--ttttctgtcTTGTGG-AGAAAAA
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold17990   295697 383 +   357190 TCCAGGCTCGTGTCACTATTCTTCTATTTGGGTTTACTTTTGCATATGGGTCAATGTTCGCAAAGGTTTGGATTGTTCATCGAATGGGTGCCAATGAGAATCAACAACTAGCAAGTCGACAGAAGGATGAGGTATGT------------------TTTACAAAAGT----TCTAAAGGTTTTTAGTTT-GCCAT--TACCAGTTTTACCTAATTTAAATTAGAA-------CAGTTTGATTTGATAGCCAAATTCCAGTTAAAACCATTACTGAGTAACTTCTCTGAGAAGGTAAG-TTGAGAATgggaatgaaatgaaatgaaatgattgGAAAGAGCAGA------AAGTATTATGAATTATAACGGTGAAGAAACGC------tttc----cagtttttttaaacaa--ctATCCttgctctga-aaaaaaa
i caeJap4.Scaffold17990 C 0 I 89

a score=24598.000000
s ce10.chrX              2962939  94 + 17718866 TTTGCTCCCGTTA--TTGCATC--TCTATGATTTTTCCAACCCCTAC-------TTGTTTT---TTCC------AACATAA-TGCAAGATTTCAAATCCTACCATTGTTTGTGTT
s cb4.chrX              17702709 102 - 21540570 T----------CAAGTTGCATCTATCTATGATTTTTCCAACCCCTccatgtattttttttccacttttttccaaaacctcA-TGCAAGAT-TCAAACCCT-ATATTGTTTGTGTT
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig15   427797  97 -  1794024 T----GCCCAATATATTGCATC--TCTATGATTTTT-CAACcccttcttg----tttttttctctctt------aacCTAATTGCAAGATAACCAACCCT-TTATTGTTTGTGTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433719  91 +   484378 A---TGCCCATTA--TTGGATC--TCTATGATTTTT-CATGCCCTTC--------TCGTTTATATTTT------AACCTCA-TGCAAGTGAACCAGCCCT-TTATGGTTTGTGTT
i caeSp111.Scaffold582  C 0 I 144
s caePb3.Scfld02_0       3601486  92 -  4147112 A---CGACCATTA--TTGCAtc--t-tatgattttt-caaccccttc-------tttttttattttcc------aaccTCATTGCAAGGTATCAATCCCT-TTATTGTTTGTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296080  89 +   357190 I

a score=3273.000000
s ce10.chrX              2963033 19 + 17718866 TGAGAAAAATGGGTAATTT
s caeRem4.Crem_Contig15   427894 19 -  1794024 CTGGAGATATGGGTGGTTT
i caeRem4.Crem_Contig15 C 0 I 85
s caePb3.Scfld02_0       3601578 19 -  4147112 TGGGAGATATGGgtgattt
i caePb3.Scfld02_0      C 0 I 60
e caeJap4.Scaffold17990   296080 89 +   357190 I
e cb4.chrX              17702811 52 - 21540570 I
e caeSp111.Scaffold582    433810 144 +   484378 I

a score=0.000000
s ce10.chrX              2963052 872 + 17718866  
e caePb3.Scfld02_0       3601597  60 -  4147112 I
e caeJap4.Scaffold17990   296080  89 +   357190 I
e cb4.chrX              17702811  52 - 21540570 I
e caeSp111.Scaffold582    433810 144 +   484378 I
e caeRem4.Crem_Contig15   427913  85 -  1794024 I

a score=491.000000
s ce10.chrX              2963924 43 + 17718866 ACTTATTTCCAAACTTTCACAAAATTAATGCTAGTATCCGT------CC
s caePb3.Scfld02_0       3601657 49 -  4147112 atctaattttatgattttgcaaaaatcagGCTAGATCTCATTATGTTCC
i caePb3.Scfld02_0      I 60 C 0
e caeJap4.Scaffold17990   296080 89 +   357190 I
e cb4.chrX              17702811 52 - 21540570 I
e caeSp111.Scaffold582    433810 144 +   484378 I
e caeRem4.Crem_Contig15   427913 85 -  1794024 I

a score=-34.000000
s ce10.chrX              2963967 5 + 17718866 --AATCA
s caeSp111.Scaffold582    433954 5 +   484378 --AATGT
i caeSp111.Scaffold582  I 144 C 0
s caePb3.Scfld02_0       3601706 7 -  4147112 AGTATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296080 89 +   357190 I
e cb4.chrX              17702811 52 - 21540570 I
e caeRem4.Crem_Contig15   427913 85 -  1794024 I

a score=1146.000000
s ce10.chrX              2963972 2 + 17718866 TG
s caeRem4.Crem_Contig15   427998 2 -  1794024 TG
i caeRem4.Crem_Contig15 I 85 C 0
s caeSp111.Scaffold582    433959 2 +   484378 TG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3601713 2 -  4147112 TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296080 89 +   357190 I
e cb4.chrX              17702811 52 - 21540570 I

a score=2527.000000
s ce10.chrX              2963974 4 + 17718866 ACTA
s caeRem4.Crem_Contig15   428000 4 -  1794024 CCTA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433961 4 +   484378 CCTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3601715 4 -  4147112 CCTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   296169 4 +   357190 ACTA
i caeJap4.Scaffold17990 I 89 C 0
e cb4.chrX              17702811 52 - 21540570 I

a score=219701.000000
s ce10.chrX              2963978 461 + 17718866  
s cb4.chrX              17702863 482 - 21540570  
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig15   428004 449 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    433965 472 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3601719 459 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   296173 504 +   357190  
i caeJap4.Scaffold17990 C 0 I 214

a score=4206.000000
s ce10.chrX              2964439 5 + 17718866 TTAAC
s cb4.chrX              17703345 5 - 21540570 CTAAC
i cb4.chrX              C 0 I 952
s caeRem4.Crem_Contig15   428453 5 -  1794024 CTAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    434437 5 +   484378 CTAAC
i caeSp111.Scaffold582  C 0 I 219
s caePb3.Scfld02_0       3602178 5 -  4147112 CTAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296677 214 +   357190 I

a score=-496.000000
s ce10.chrX              2964444 2 + 17718866 AT
s caeRem4.Crem_Contig15   428458 1 -  1794024 A-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3602183 2 -  4147112 AT
i caePb3.Scfld02_0      C 0 I 147
e caeJap4.Scaffold17990   296677 214 +   357190 I
e cb4.chrX              17703350 952 - 21540570 I
e caeSp111.Scaffold582    434442 219 +   484378 I

a score=659.000000
s ce10.chrX              2964446 57 + 17718866 ACATACTTTTGCAAC------CGCACAGATTTTCGATTGCAGTCTTACTAACACC-ACTCTGCT
s caeRem4.Crem_Contig15   428459 52 -  1794024 -------GTTTCAACTCGATTCACCCCGGTTTGTGATTTC-----TACTAACACCAACTATGCT
i caeRem4.Crem_Contig15 C 0 I 200
e caePb3.Scfld02_0       3602185 147 -  4147112 I
e caeJap4.Scaffold17990   296677 214 +   357190 I
e cb4.chrX              17703350 952 - 21540570 I
e caeSp111.Scaffold582    434442 219 +   484378 I

a score=0.000000
s ce10.chrX              2964503 1514 + 17718866  
e caePb3.Scfld02_0       3602185  147 -  4147112 I
e caeJap4.Scaffold17990   296677  214 +   357190 I
e cb4.chrX              17703350  952 - 21540570 I
e caeSp111.Scaffold582    434442  219 +   484378 I
e caeRem4.Crem_Contig15   428511  200 -  1794024 I

a score=282.000000
s ce10.chrX              2966017 3 + 17718866 CAT
s caePb3.Scfld02_0       3602332 3 -  4147112 cat
i caePb3.Scfld02_0      I 147 C 0
e caeJap4.Scaffold17990   296677 214 +   357190 I
e cb4.chrX              17703350 952 - 21540570 I
e caeSp111.Scaffold582    434442 219 +   484378 I
e caeRem4.Crem_Contig15   428511 200 -  1794024 I

a score=-575.000000
s ce10.chrX              2966020 1 + 17718866 -------A
s caeSp111.Scaffold582    434661 1 +   484378 -------A
i caeSp111.Scaffold582  I 219 C 0
s caePb3.Scfld02_0       3602335 8 -  4147112 ttcaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296677 214 +   357190 I
e cb4.chrX              17703350 952 - 21540570 I
e caeRem4.Crem_Contig15   428511 200 -  1794024 I

a score=1596.000000
s ce10.chrX              2966021 4 + 17718866 TCAT
s cb4.chrX              17704302 4 - 21540570 TCTT
i cb4.chrX              I 952 C 0
s caeSp111.Scaffold582    434662 4 +   484378 TCTT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3602343 4 -  4147112 tctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296677 214 +   357190 I
e caeRem4.Crem_Contig15   428511 200 -  1794024 I

a score=-263.000000
s ce10.chrX              2966025  8 + 17718866 TTTT--TTCC
s cb4.chrX              17704306  8 - 21540570 ATTA--TTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   428711  8 -  1794024 tTTT--CTTC
i caeRem4.Crem_Contig15 I 200 C 0
s caeSp111.Scaffold582    434666  8 +   484378 TTCA--ATTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3602347 10 -  4147112 tccatgTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   296677 214 +   357190 I

a score=406524.000000
s ce10.chrX              2966033 729 + 17718866  
s cb4.chrX              17704314 780 - 21540570  
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig15   428719 728 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    434674 721 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3602357 728 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   296891 794 +   357190  
i caeJap4.Scaffold17990 I 214 C 0

a score=-231.000000
s ce10.chrX              2966762 21 + 17718866 TGAGCTGGCTGTATCAATATT
s caeJap4.Scaffold17990   297685  6 +   357190 ---------------GATCTT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3603085  0 -  4147112 C
e cb4.chrX              17705094 28 - 21540570 I
e caeSp111.Scaffold582    435395  0 +   484378 C
e caeRem4.Crem_Contig15   429447  0 -  1794024 C

a score=-23728.000000
s ce10.chrX              2966783 168 + 17718866 TTCTAAAAACAAGGAAAAAAACTTTTGAGTTTATCGGTTTTTCAACAAAA---AAACTA---TGATGGAATTAAGTTGTTCGCTTTTTCACCAGTAGTTGCAAAAAATTACTGAAAACAAATTAAAAGAAGGATTATTGATTTTTTGTGTTTCAAAATGTAGAAACAGTAATTT
s caeRem4.Crem_Contig15   429447  37 -  1794024 --------------------AGTT-------------------------AGTCAATCTGATTTCATGGAG------------------------------------------------AA---------------TCAgatattt-----------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3603085  57 -  4147112 ------------------AAACTT-------------------------A---AAAccg---ttatgaaa------------------------------------------------aaaatgaaatacacGTGCCGAATAGTCTG-------------AGAAACA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297691  27 +   357190 ------------------------------------------------------------------------------------------------------------------------TTTCACACTCGCTGTTTCACTGTTTCA---------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17705094  28 - 21540570 I
e caeSp111.Scaffold582    435395   0 +   484378 C

a score=-4436.000000
s ce10.chrX              2966951 88 + 17718866 TATTACCTCACATAATTTACCAACCAACCGTTAGCGTATACCTTT--CTGACCAACAATGTGAACTAGTTATCGGTGTTGGTTTTTTTGG
s caePb3.Scfld02_0       3603142 19 -  4147112 ------------------------------------TAtaccatt------tcaaaaatgt-----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297718 24 +   357190 -------------------------------------ATTCTCTCAATTTCACAACAATGC-----------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17705094 28 - 21540570 I
e caeSp111.Scaffold582    435395  0 +   484378 C
e caeRem4.Crem_Contig15   429484  0 -  1794024 C

a score=-6487.000000
s ce10.chrX              2967039 53 + 17718866 ACTAAATGGACTAAGGTCTTTTTTTAAAATCTAATCTAAAATGGCAATTTTTC
s caeSp111.Scaffold582    435395 29 +   484378 ACTAAATGGAA--------Ttcgtgaaaattgaa----------------tat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603161 11 -  4147112 -tcaaatgt-----------------------------------------ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297742 13 +   357190 ----------------------------------------ATCATTATTTTGT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17705094 28 - 21540570 I
e caeRem4.Crem_Contig15   429484  0 -  1794024 C

a score=181627.000000
s ce10.chrX              2967092 201 + 17718866 TTCAGTACTCATCTGCACCTACATCTCAGTAGGCCTAATATATGGTCCCAAAATTCGGCACATTATAAAAGTCCCACCAAGTGCCGATGAAATACAATTGAATGGAAACGTAGGACCCGGTGTAATGTCAAAAGTGGATCAAAAAAGATATGATATGCTAAAGAAGGAGAACGAAACGTTGCAAATACAAATTGAAGAGGT
s cb4.chrX              17705122 201 - 21540570 TACAGTTCTAATCTGCACATACATCTCTGTGGGATTAATATATGGTCCAAAGATCCGTCATATAATAAAAGTACCACCAAGTGCTGACGAAGTTCAACAAAATGGAAACACCGGTCCTGCAGTAATGTcaaaagtagatcaaaaacgATATGATATGTTGAGAAAGGAAAATGAAACACtgcaaaaacaaattgaagaGGT
i cb4.chrX              I 28 I 399
s caeRem4.Crem_Contig15   429484 201 -  1794024 ttcagtgctaaTATGTACCTACATTTCGGTGGGACTAATATACGGCCCTAAGATCCGTCATATTATAAAAGTTCCACCAAGTGCAGATGAAGTACAGCAGAACGGAAACGTTGGTCCTGCGATTATGTCAAAAATAGATCAGAAAAGATACGACatgctgaaaaaagagaatgagacACTGCAGAAACAAATTGAAGAGGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435424 201 +   484378 tttagtACTCATATGCACTTATATTTCCGTTGGTTTGATTTACGGACCGAAGATTCGCCACATCATAAAAGTACCACCAAGTGCTGACGAAGTTcaacaaaatggaaatgcAGTTCCTGCTGTCATGTCTAAAGttgatcaaaaaagatatgacatgctgaaaaaggagaatgagactctccaaaaacaaatagaagaggt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603172 201 -  4147112 ttcagttcttatTTGTACATACATTTCCGTGGGACTGATATATGGACCCAAAATTCGACACATTATCAAAGTGCCACCGAGTGCTGATGAAATCCAACAAAATGGGAACTCTGTCCCTGCTGTCATGTCAAAGATAGACCAAAAAAGATATGATATGTTGAAGAAAGAGAACGAAACcttacaaaaacaaattgaagagGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297755 201 +   357190 TCCAGTTCTCATCTGCACCTACATATCGATAGGGTTGATCTACGGACCGAAAATCCGGCATATTATCAAAGTGCCACCAAGTGCAGATGAGGTGCAGCAAAATGGTAATGTAGCGCCAGCAGCAATGTCAAAAGTGGATCAGAAGCGGTATGACATGCTCAAGAAAGAGAATGAAACGCTGCAATTACAAATTGAAGAGGT
i caeJap4.Scaffold17990 C 0 I 40

a score=-6498.000000
s ce10.chrX              2967293 23 + 17718866 AATCTCTCTGCTTTTGAATTAC-----------a
s caeRem4.Crem_Contig15   429685 22 -  1794024 -----------ATCGCCAGTACCCAGGGGAACA-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435625 17 +   484378 -----gcatattttattattat------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603373 13 -  4147112 --------TGCTTTCTCAAT-T------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   297956 40 +   357190 I
e cb4.chrX              17705323 399 - 21540570 I

a score=-24.000000
s ce10.chrX              2967316 16 + 17718866 -tatattttatttttta
s cb4.chrX              17705722 17 - 21540570 tatatttttaaattttc
i cb4.chrX              I 399 C 0
s caeRem4.Crem_Contig15   429707 16 -  1794024 -cgaaaccaaaatttta
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435642 16 +   484378 -tattattaaaGTTTTA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603386 16 -  4147112 -TATAATGAGTgctgta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   297956 40 +   357190 I

a score=95168.000000
s ce10.chrX              2967332 127 + 17718866 ttt--------tCAGAAAGAGCGAAAAATCCACGAATGCAAAGAACGTCTCGAAGAGTTGACAAAAAACTCGGAGACTGAAGATATGAATGCTCAATTACTTTGCGAAAATGATAAACAAATCGCCGGTACATAT
s cb4.chrX              17705739 129 - 21540570 cat------tttcagaaagaacgAAAAATCCATGAATGTCGAGAACGATTAGAACAATTGACgatgaattctgaaacagaAGACATGAATGCTCAACTACTAAGTGGTAGCAATAAACAGCTAGCAGgtttggat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   429723 129 -  1794024 ttt------gttcaGAAAGAACGAAAAATTCACGAGTGTCGAGAACGTTTGGAAGCATTGACAACTAGTTCAGAAACGGAAGATATGAATGCTCAATTGCTCAATGGGAATAACAAACCGCTGGCAGGTAAGATA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435658 133 +   484378 TAT--ACGATTTCAGAAAGAGCGAAAAATCCACGAATGTCGAGAAAGGTTGGAGGCATTAACGAACAGTTCAGAAACGGAAGATATGAATGCTCAACTGCTCAGTGGCAATAACAAACAGCTTACCGGTAAGTAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603402 134 -  4147112 tttgaaaaaattcagaaagagcGCAAAATCCACGAGTGTAGAGAGCGATTGGAAGCACTGACAAACAGTTCTGAGACAGAAGATATGAATGCTCAATTGCTCAGTGGGAATAACAAGCAGCTCACCGGTATG-AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297996 127 +   357190 --------GTTacagagagaaagaaaaatcCACGAATGTAGAGAGCGACTTGACGCTTTGACAAATAATTCTGAATCAGATGATATGAATTCTCATTTGCTCAGCGGCAATAATAAACAGATTACCGGTACGAGT
i caeJap4.Scaffold17990 I 40 I 47

a score=-8524.000000
s ce10.chrX              2967459 36 + 17718866 A--------TTCCGTTTTCCTGCCAA------ATTTTTTTTTGTTAATGA
s cb4.chrX              17705868 34 - 21540570 t--------ttcaatttt--ttttcg------attttttaagatTCTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   429852 44 -  1794024 TCCACCTGATTCAATTCT--CACTCAGCCAgtaattcttaa----ttttt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435791 32 +   484378 T----------CAGTAGT--TGTTTG------GTAttacattttccattt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603536 32 -  4147112 C----------TTGTTTT--TACTTC------ACATTatattttccatat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298123 47 +   357190 I

a score=150893.000000
s ce10.chrX              2967495 279 + 17718866 TTC-AGATGAGAACTTAACGTATTCAACAGCCACTACTCTAACAACAACTATTCCATTAATAGATTTGCAA---AATGGAAATCATCCGGGTTAGTTT-------TTCGTTTAAAGATTTTTTTTAGAAAAAAGTGGA-------------ATTTTCAGGTCAAATTTATGAAAATGACAACGAT---------GACGACGGCTCATCAACGTCATCCGATGAAATACTTTTATGAACATATAATGTCCACTGTATAATAT----TTGAAATTTTGAATTGTGTGTAA--------AA-TTGTGA-TCTGATGACGA-TAGTGTCAT
s cb4.chrX              17705902 278 - 21540570 TTCCAGAAGACAATATGACATATTCCACGGCTACCACATTAACCACAACAATACCATTAATAGATTTACAATTGAATGGAACTCATCcgggtattttttt----ttggtcctaaaaagttctagaattaaaatcgata-------------tttttcaggtcaaataTATGCAAATGACAATGAC---------GATGACCGTTCATCAACGTCATCTGACGAAATACTTTTGTGAACT----------ACTGTATTTCTCCCTTTC-----------TTATGTATATTGTgtaaaat-ttgtgattttggtGAAGA-TTGTGTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   429896 266 -  1794024 ttctagacgAGAACATGACATACTCCACGGCAACAACGCTAACGACAACAATTCCATTAATAGATTTACAACTGAATGGAA---ATCCGGgtatattt-----------------gaattttataat--aCATCATTAGCAattgttctatttttccagGTCAAATATATGAGACTGAAAACGAC---------GATGATCGCTCGTCGACGTCATCTGATGAAATCCTTTTATGAACTTG----TTCCAATGTATATTTC----TT-----------TTGTGTGTAT--------AA-TTGTGA-TTCGGTGAAGA-TTGTGTCAT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    435823 263 +   484378 ttc-agatgaaaacaTGACATATTCAACGGCAACAACACTTACAACAACTATTCCATTGATAGATTTACAGCAAAATGGAAATCATCCGGGTAATGCT----------GACTCGAAATTTCTGT--CTAAAATATTCT-------------GTTTCTAGGTCAAATATATGAGAATGACAACGAC---------GATGATCGTTCTTCAACGTCATCTGATGAAATATTATTATAAATATATG--TTTCATtgtaca--tt----tt-----------ttgtgtgtaa--------AC-TTGTGA-TTCGGTGGAGATTTGTGTCat
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603568 265 -  4147112 ttctAGAAGAAAACATGACGTATTCAACGGCGACAACACTGACAACAACAATCCCATTAATAGATTTACAACAAAATGGAAATCATCCGGGTACTTTA----------TCTTCTACAGTCACATTACCTGAATGTACT-------------TTTTGCAGGTCAGATATATGAGAATGATAACGAC---------GATGATCGTTCTTCGACGTCATCTGATGAAATCTTATTATGAATATA----TTGCATTgtacagttt----tt-----------ttgtgtgtta--------AA-TTGTGA-TTCGGTGGAGA-TTGTGTCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   298170 273 +   357190 -tccaGACGAGAACATGACATATTCCACGGCAACCACACTTACCACAACAATTCCGCTAATTGATTTGCAA---AATGGAAATCATCCGGGTATCtttttaaaactctatttaaatacatcttttaattttattttta-------------ccttttaGGTCAAATCTATGAACATGAAAATGACAACGATGAAGATGATCGGTCGTCAACATCATCTGACGAGATATTATTATGAa------------acaactttcttt----tt-----------ttttgtataa--------actTTGTGA-TTGGGTGAGGA-CAGTGTCAT
i caeJap4.Scaffold17990 I 47 C 0

a score=180.000000
s ce10.chrX              2967774 1 + 17718866 T
s caeSp111.Scaffold582    436086 1 +   484378 t
i caeSp111.Scaffold582  C 0 I 7
s caePb3.Scfld02_0       3603833 1 -  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   298443 1 +   357190 C
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17706180 0 - 21540570 C
e caeRem4.Crem_Contig15   430162 0 -  1794024 C

a score=282.000000
s ce10.chrX              2967775 3 + 17718866 ACT
s caeJap4.Scaffold17990   298444 3 +   357190 ACT
i caeJap4.Scaffold17990 C 0 I 1
e caePb3.Scfld02_0       3603834 0 -  4147112 C
e cb4.chrX              17706180 0 - 21540570 C
e caeSp111.Scaffold582    436087 7 +   484378 I
e caeRem4.Crem_Contig15   430162 0 -  1794024 C

a score=0.000000
s ce10.chrX              2967778 186 + 17718866 GATggtggagtagctccggtgagcaaatcgcttcgaaaaaacatgcctatggaaccacaatgacaaaatatcatagttaaactcagaagaaaagaaattttgaaaaaattttattccgagccaaaaagtggcaaatactgatatttttTCCGTttttttcaaaaattttcaaaaaattttatgaaa
e caePb3.Scfld02_0       3603834   0 -  4147112 C
e caeJap4.Scaffold17990   298447   1 +   357190 I
e cb4.chrX              17706180   0 - 21540570 C
e caeSp111.Scaffold582    436087   7 +   484378 I
e caeRem4.Crem_Contig15   430162   0 -  1794024 C

a score=350.000000
s ce10.chrX              2967964 6 + 17718866 tttttc
s caeRem4.Crem_Contig15   430162 6 -  1794024 TTTTGC
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3603834 0 -  4147112 C
e caeJap4.Scaffold17990   298447 1 +   357190 I
e cb4.chrX              17706180 0 - 21540570 C
e caeSp111.Scaffold582    436087 7 +   484378 I

a score=846.000000
s ce10.chrX              2967970 3 + 17718866 cat
s caeRem4.Crem_Contig15   430168 3 -  1794024 CAT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3603834 3 -  4147112 CAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298447 1 +   357190 I
e cb4.chrX              17706180 0 - 21540570 C
e caeSp111.Scaffold582    436087 7 +   484378 I

a score=-2648.000000
s ce10.chrX              2967973 83 + 17718866 aatttttttaaaaatttttaaactatgatctttggtcattttggtgccaaagatatgttttaaaccaatttccccacggccgc
s caePb3.Scfld02_0       3603837  2 -  4147112 AA---------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298447  1 +   357190 I
e cb4.chrX              17706180  0 - 21540570 C
e caeSp111.Scaffold582    436087  7 +   484378 I
e caeRem4.Crem_Contig15   430171  0 -  1794024 C

a score=-549.000000
s ce10.chrX              2968056 21 + 17718866 tacctccaccttAAAGTCGCC
s cb4.chrX              17706180 19 - 21540570 TTTGTCCCCCCT--CGCCGCC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3603839  5 -  4147112 ----------------CCACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298447  1 +   357190 I
e caeSp111.Scaffold582    436087  7 +   484378 I
e caeRem4.Crem_Contig15   430171  0 -  1794024 C

a score=918.000000
s ce10.chrX              2968077 7 + 17718866 TTCCCAT
s cb4.chrX              17706199 6 - 21540570 -TGCCAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    436094 7 +   484378 ttttcat
i caeSp111.Scaffold582  I 7 C 0
e caePb3.Scfld02_0       3603844 0 -  4147112 C
e caeJap4.Scaffold17990   298447 1 +   357190 I
e caeRem4.Crem_Contig15   430171 0 -  1794024 C

a score=2910.000000
s ce10.chrX              2968084 3 + 17718866 CCA
s cb4.chrX              17706205 3 - 21540570 CCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   430171 3 -  1794024 CCA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436101 3 +   484378 cca
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603844 3 -  4147112 CCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298447 1 +   357190 I

a score=71908.000000
s ce10.chrX              2968087 203 + 17718866 GCATTCTTTCGCC-----TTACCCCCTTT--------------AGAGGATCTCACTTTT---GTCTTGTCG-----------ATGCGTT--TTTTTTGTCT-CTTCTACTTCTATGAATGAATCAG---------ACACTTACT--------------------------------------TTTCCT-----TTTTATTCTT--------------------GATTTTTGATCA--CCAGTTAAATCAGATCATTAAGAATT-------------GCGGAC-GAAAAAGGTGTGGCTGCA-GATTAATCGTT-TTTGGAATCGAAT------CG
s cb4.chrX              17706208 268 - 21540570 GCATTCTTTCACCCCCTTTCTTCCATTTATTGTCTGTTTTTCTAGACGATCTCACCTTT----TTCTTTCGCTCAGTCCTGTCTTAGCC--TTTT-------TTCTCACTGCTATGAATGATTCAG---------ACACTTATTTA-----------------------CTGTCC-------AAATTTTCTTGTTGTATTATTGTTGGTggttt------tccgatttctgatcA--CCAATCAAATCAAATCATTACACATTCAGAGaatggagaaggagaagaaaaaggtgTGGCTGAA-GAGTAATCGTTATTTGGAGCGAAAT------CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   430174 215 -  1794024 GCATTCTTTCACC----TTTACCCCCTTA----CTCTTTTTCTAGAGGATCTCACTTCT----TCTTgtcg-----------attttct--tttt-------catccaCTGCTATGAATGATTCAG---------ACATTTACTGG------------------------------------GAATTC-----TTATACTGTT-------GTTT------TATGATTTCTGATCA--CCAATCAAATCAAATCATTACACATT-------------GGGGACAGAAAAAGGTGTGGCTG---TAGTAATCGTT-TTTAGAGCGGAAT------CT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    436104 218 +   484378 aCATTCTTTCACC-----TCACCCCTTAC----TCGTTTTTCTTGAGGATCTCAATTT-----TCCTGtcg-----------attttctcatttt----------tcactgCTATGAAGATTCAAG---------ACATTTAC---------------------------------------CTACTT-----TGTTA-TATC-------CTTT------CTCGATTTCTGATCATCTCATCCAAATCAAATCATCACACATT-------------GCGGACAGAAAAAGGTGTGGCTGTA-GATTAATCGTT-TTTGGAATcgtatttttcctt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3603847 210 -  4147112 GCATTCTTTCGCC-----TTACTCctact----ttgtttt--ttgaggatctccatttt---ctcctgTCG-----------ATTTACT--TTTT----------CTACTGCTATGAACCATTCAG---------ACAATTACT--------------------------------------TTACTT-----TGGAATTATT-------CTTT------CTCGGTTTCTGATCA--TCAGCCAAATCAAATCATTACACAAA-------------ACGGACAGAAAAAGGTGTGGCTGTA-GATTAATCGTT-TTTGgaatcaaat------ct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   298448 272 +   357190 GCACTCTACAGTC-----TTACTTTCTGT-----------TATAGAGGATCTCACTTTTTTCTCCCTGtcg-----------atttcta--ttttctgCCCGTTTTTGC--CTATGAATGAATAAATGTGTATGTGCATCAATTGAACAACATTCTCGCTGCCCATCGGCTGCCCCGGGAAATTAGCG-----TTCAATTATC----AAACTTTTAAATGCCTGATTTGTGATCA--CCAATCAAACCTAATCATTACACATT-------------GATTGA-GAAAAAGGTGTGGCTGGGTGCGAGATCATT-CTTGGAATTGAAT------TG
i caeJap4.Scaffold17990 I 1 I 367

a score=-1742.000000
s ce10.chrX              2968290 3 + 17718866 TTT--
s cb4.chrX              17706476 2 - 21540570 TC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   430389 3 -  1794024 TTT--
i caeRem4.Crem_Contig15 C 0 I 1011
s caeSp111.Scaffold582    436322 5 +   484378 tttct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3604057 5 -  4147112 ttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298720 367 +   357190 I

a score=667.000000
s ce10.chrX              2968293 2 + 17718866 TG
s cb4.chrX              17706478 2 - 21540570 TG
i cb4.chrX              C 0 I 1456
s caeSp111.Scaffold582    436327 2 +   484378 cg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3604062 2 -  4147112 cg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298720 367 +   357190 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=2005.000000
s ce10.chrX              2968295 50 + 17718866 GGGCTAATGTTACT-------TTAATTTTGCGGTATTTGTTGTTTTGTTTGTCAATA
s caeSp111.Scaffold582    436329 54 +   484378 gCGCCAGAG--GCCGGGGAAGGTTACTTTGCGGTa-cagattttttgtttgtcaGCA
i caeSp111.Scaffold582  C 0 I 711
s caePb3.Scfld02_0       3604064 42 -  4147112 ggGTCA------CC-------CTTACTTTGCGgta-aagtttttctgtttg-cagta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=-961.000000
s ce10.chrX              2968345 411 + 17718866 ACCTTGTACGAAATTTATTGTGAACCAAAAAACAAACAATTTTTGTTCTCGTATTTGATAATTTTCGATGCGGCATTTCAGATGTGGAATGATGTGAGAATAACACTTTTTTAAA------GTTTGCGAGTTAAAAAAAACT----AAAACTACCCCGAAATGTCCTACTTTCTTGAAAAGAACTCTCGTAAAAATGTCCAAAAATGT--TTTATGGCA-----AAATTTCGAAAAAAAAGAGCCAAAATTCGCTGAAATTGAAATTTCGCCAACGTTTTTCGATgtacagtagtgcgagtgcaaaaattgctttaaaatatgcctatgacatggtcaaataacaaagtaa-aaaattcacataaatt--attttaatttt-aaatgatttttttgaaaattagggaaatctcagtttatgccactttcttg
s caePb3.Scfld02_0       3604106 349 -  4147112 --ctt---caaaa--taatgagaacaaaaaagaaaa--------------gtg------------------ggtgttagagaggaaaaa-------agtacATTATCATTTTAAAACCATCGTTTTCCAATTGCCAACGACCTCCATAAACAGTCCCGATAAATCGTTCCTCTTT---------TCTGTCggcattgttttgaaatgttgtttACGACCTTTGTGaagtttgatggaaaaatgcaaaagtc-------------ATCTAGCCATCA-----AAATTTAGAATGgagaatgttcaaaatgttgtttATAGT-TTCACAAGA---GTTCATAGAATTCAATGACAGAATCCAGATGAATTTgacttgaattttgaaacgg-----ctgaaaagtttgaaggtCCCAACTGATTCC-CGTTGTTG
i caePb3.Scfld02_0      C 0 I 89
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=0.000000
s ce10.chrX              2968756 107 + 17718866 gaatcgccgatCAAAGAAGCGTTTTAAAGAAGCGTCGAGCATTTCAATTTTTAAGAGTTTTTGCAAAAAATGGCAAAAACTCGGTAATTGCCTATTTTAGACTGTCA
e caePb3.Scfld02_0       3604455  89 -  4147112 I
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=116.000000
s ce10.chrX              2968863 132 + 17718866 CtaaaaattaaaaaaaaaatgttttaaaagttttattattatGATTTTTGGTAATTTTTTGGTACGAATTCTTGATCAATCCATTGAAACGAAAAACCCACAACCTCTACTCCATCT-TTTTAGGTTTAGAAT
s caePb3.Scfld02_0       3604544  95 -  4147112 ttcgatattaagtaaaaaat-ttcaaaaaattttacttgc-------------ATTTCTCAACTTGAGCTCT-----GAGTTATTGAAA-------------------ACTGAGTCTGTCTCAGATTTTGCGT
i caePb3.Scfld02_0      I 89 I 89
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=0.000000
s ce10.chrX              2968995 114 + 17718866 AATCCTCTTGAAGTATGCCTATGCCTGTCTGGTTATGCCTGCCTGCCTGCCTAATACCTTCGTCGAGATGAATCAATCTAGTTTCGGAAAATTTCCAAAAGTGGACAGAAGTGC
e caePb3.Scfld02_0       3604639  89 -  4147112 I
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=-3042.000000
s ce10.chrX              2969109 394 + 17718866 ATTGTAGCAAAACATGTTGAAACGTTAAATCTCATGAATTTTTCTTTGTTTTTCAGAGTTGTTTGAATCGAAAAAATTATGTTTCTTTTTTTCGAAATTATGCAGAAAAAATGACACGTTAATAACTTTCAGGTTCTAGACGAGTTTAACAACAACAACAAAAACTTTTTTTACCATTTAAAAAAATAAGGCAGACCCGGCCGACCAAAAATATTTTGGTCGATTTATGTACATGACGTTGTGATTCaataaaaatattaaaaa---------aaaaaaaCTTCACTCTTTCAAACATTGAACATGGATCTGTTGTAATGATTGAAAATATTTTAAGCAAAATTTTTAATTTTCGGTGCCAAATTCGGAAGGTGTTTGCATTATTTTCAGATTTTCAATACCC
s caePb3.Scfld02_0       3604728 297 -  4147112 ATTGTCGGAAGACCT--------------TCTCGAAATTCttattttaatt---------------------aaaattttg--------------aattattcatcAAATATGTC-TGTCAGAAG-----ATGTTTGAATAGAATTGAATATCAGATTTCAACACTTTTCGATCCATATTCACATGTTTGGAA------GCCTTTTGATAATCTTCTGGTCACCTGCTGTATCCTATTTTTTACATCAACA-----ACTCAAAACTAGCTCGTGATAAAACCACA-------AAATAATGAC----AAATTGTGTTACCaaaggaaattgaatgaaacg-------------------------tCAGTGAGCGttt---ttttCCACCAACTAACAATA-AA
i caePb3.Scfld02_0      I 89 C 0
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I
e caeRem4.Crem_Contig15   430392 1011 -  1794024 I

a score=3496.000000
s ce10.chrX              2969503 60 + 17718866 AGGAAAAAAATAGAGAAGCAAACATTTAA-TATTGGTTTTGGGGTTTTGCTGTTCCAA-------TCC
s caeRem4.Crem_Contig15   431403 62 -  1794024 AGAAATAAAGTACCAGAGCAAACATTTAATTGTTCATTTC------CCTCCGTTCAAAACGATGCTCC
i caeRem4.Crem_Contig15 I 1011 I 23
s caePb3.Scfld02_0       3605025 53 -  4147112 AGAAATAAAGTACGAGAGTAAATATCGTTTTGTTCGTTTA---------CCGTTCCAAA------TCC
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold17990   298720 367 +   357190 I
e cb4.chrX              17706480 1456 - 21540570 I
e caeSp111.Scaffold582    436383 711 +   484378 I

a score=13659.000000
s ce10.chrX              2969563 124 + 17718866 AGCTAGAAAGA--GAACGACAAACAAGTTG-ATCTTTTCCT------TCTCTTTTTCGTTTTGTTTCGCTCTGCT-ACCTGAACGCCACACGTTTTTTTTCTGTTTACCTCCTTACCTCCTCAACTTTTCAAAA
s cb4.chrX              17707936  78 - 21540570 -aattagaaaa--gaacGACAAACAAGttgcattctttttt----------------ctttt-----------ca-cccTGAACCCAA-----------TCTTTCTCTCAACACACA--------------CAT
i cb4.chrX              I 1456 C 0
s caeRem4.Crem_Contig15   431488 102 -  1794024 -gaatgaaaaa--gaacgaCAAACAAGTTgcattcctttttttcttttgccattctctttct-----------ct-acctgaacctaccacagg---ttctcttttcttttctttcc--------------gac
i caeRem4.Crem_Contig15 I 23 C 0
s caeSp111.Scaffold582    437094  95 +   484378 --AGTGAAAGAGGGAACGACAAACAAGTtgcattcttttct------tttcatcctcttttt-----------ttcacctgAACC------ATGGTGGTTTCTCTAACTTCTCCACC--------------GAC
i caeSp111.Scaffold582  I 711 C 0
s caePb3.Scfld02_0       3605115  98 -  4147112 --agtgaaaaa--gaacgACAAACAAGTTGCATTCTTTTCT------CCTGAGTCTCttttt-----------tt-ACCTGAACcttctaaaaacttttctcctcattcttttCTCC--------------GAC
i caePb3.Scfld02_0      I 37 C 0
e caeJap4.Scaffold17990   298720 367 +   357190 I

a score=106880.000000
s ce10.chrX              2969687 231 + 17718866 ACTC-AAGGTTTCTGATCTA----------------------------AGATGAAACC----------G-A--------------------------------------AAAGAAACTTTCACTCACCAGTGTTCAAAGAT---GGACGACATGTTCGGGGTGGCAGTGAAGGTAGCCGTTGTCAAG-GAA-ATATGCAACCAGCTAACCACACTGCCTCTCGAGCAT-TGTCC--GTT-ATAAGAATAA----TAGTCAGTAGTGGTATTAGTAGT-----TATTGAATA---ACGTCGAGAAA-------GTATTGAATGGG-AAAAAAAAGGAAG
s cb4.chrX              17708014 257 - 21540570 ACTC-GAGGTTTTTGAtctg------------------------ggaaaaaagaaactc-----acccg-aaggttttttttgtttcgttaCTAGTTCCCCACCTAACTAAA------TTCACTCACCACTGTTCAAAGATGGAGGACTACATGTTCGGGGTGGCAGTGAAGGTAGCCGTTGTCAAC-CTGTGTATGCAACCAGCTAACCACACTGCCTCACGACCATGAGTGC--TTTTACA-----------------------GGAATAATATTGAGAATAGT--AGA---ATAACATGAAA------------GATAATA-TAGCAGTTAGGAG
i cb4.chrX              C 0 I 1582
s caeRem4.Crem_Contig15   431590 242 -  1794024 GCTC-AAGGTTTTTGATCT-----------------------------AAAAGATACT-------CTCG-ACAG-----------------------------------AAA------TTCACTCACCAGTGTTCAAAGAT---GGACTACATGTTCGGGGTGGCAGTGAAGGTAGCCGTTGTCAAT-TCA-ATATGCAACCAGCTAACCACACTGCCTCTCGAGCAC-CGTCC--GTTTATAATAAAGA----TAGG-AGTAGTTGGAACAGTAGTAAGAATAATCAAGA---AGACTCCGAAAAGGGGAAGCATTGATAGCG-AAGTAGCAAGaat
i caeRem4.Crem_Contig15 C 0 I 33
s caeSp111.Scaffold582    437189 248 +   484378 ACTCAAAGGTTTTCGATCTG-----------------------AAGAGATGAGACact-------ctcgaa--------------------------------------aaa------ttcactcACCACTGTTCAAAGAT---GGACTACATGTTCGGGGTGGCAGTGAAGGTAGCCGTTGTCAAT-TCA-GTATGCAACCAGCTAACCACACTGCCTCTCGAGCAC-CGTCT--GTTTATGATAACGA------AT-ATTAGTAGGCGTAGTAGAGGAAATAAGAAATACGGAAGAGGCAAAT-GTGAAGGAGGTGATAGCATGAAAGGCAGAAAT
i caeSp111.Scaffold582  C 0 I 23
s caePb3.Scfld02_0       3605213 250 -  4147112 ACTC-AAGGTTTTTGATCTG------------------------AGAGATGAGACACT-------CTCG-A--------------------------------------AAA------TTCACTCACCACTGTTCAAAGAT---GGACTACATGTTCGGGGTGGCAGTGAAGGTAGCCGTTGTCAATGTCA-GTATGCAACCAGCTAACCACACTGCCTCTCGAGCAT-CGTCCTGGTTAATGATAAGGAATAGCTAT-AGTAGTAAGCTTAGTAGTAGTAATATGCAAAA---AGAGGGGAAAA-CCGGAGGCGGTGATAGCG-GAATAGCAAGAAT
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold17990   299087 265 +   357190 ACTC-AAGGTTTTTGATCTGAACCTCTGTTTCACTCTCAACaaaactaaaaagaaatttcaaaaaatag-a--------------------------------------aaa------tagacTCACCAATGTTCAAAGAT---GGACAACATGATCGGGGTGGCAGTGAAGGTAGCCGTTGTCAAA-ACA-TCATGCAACCAGCTAACCACACTGCCTCCCGAGCAC-CGTCC--ATT-GTGGAGAgaattgaaaat-gaaaaatggatgGATAGTTAGGATAGATAA-----ACGAAGTGAAT--------TGATGAAAAAG-GCGTGCCGAG---
i caeJap4.Scaffold17990 I 367 C 0

a score=6426.000000
s ce10.chrX              2969918 58 + 17718866 CTGTGGCCTGTCGC-ATAGTTACGGGGAGATTTAGA--------------G----TTGTTTGT-TGGACATCTGCAGT
s caeRem4.Crem_Contig15   431865 61 -  1794024 TCGGGGCGTGTCGC-ATGGAGACGAGCTGAGAGAGA--------------GGAGAATGTTTGT-TGG-CAACGACGGC
i caeRem4.Crem_Contig15 I 33 I 40
s caeSp111.Scaffold582    437460 53 +   484378 TCAGGGCGGGTCTT-ATATAGACG-GCTT---GAGA--------------G----CTGTTTGT-TAG-CAACGGCAGT
i caeSp111.Scaffold582  I 23 I 1344
s caePb3.Scfld02_0       3605485 55 -  4147112 TCAGGGCGTGTCTCAAGAAAGACGAGCAG---GAGA--------------G----CTGTTTGT-TAG-CAACGGCCGG
i caePb3.Scfld02_0      I 22 I 34
s caeJap4.Scaffold17990   299352 66 +   357190 TCGTTTCGTGTCGC-CTGGAGACGGACGAGCCGAGAtggctggctggctgg----ctgTTTGTCTGG-CAAC------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              17708271 1582 - 21540570 I

a score=1284.000000
s ce10.chrX              2969976 19 + 17718866 GGCTGAAATGAAAGTATTG
s caeRem4.Crem_Contig15   431966 19 -  1794024 gggaaaaacaaaactgaTT
i caeRem4.Crem_Contig15 I 40 C 0
s caePb3.Scfld02_0       3605574 19 -  4147112 aAGTAGAAGAAAACGAATA
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17990   299418 15 +   357190 ----GAGAcgaaaatactg
i caeJap4.Scaffold17990 C 0 I 1133
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=-9635.000000
s ce10.chrX              2969995 166 + 17718866 TTTTCCAAAATATATAATTTG-----------------------AATAGCTAGA--ATTGATAGCTTCG--------------GAATAACA----------------------AGTAAAGTTAACATGGAGATTGAATATTAATCTTCAAAACATTGAGGAATGCGTAATACTGAACGGATTCAAGTTTGACACTGTAACTGGAAAA--------AGTAGAAAT--------------------------------------TGCAAAAGGTA
s caeRem4.Crem_Contig15   431985 217 -  1794024 TCTTCATAAATATGTATACTG--------TACCACTAACAATCGGGACGCTACA--AGATACATGTCTATCTAGCTTGTTAC-AGCCTAGACCCCACCTGCCGGTGGCAAAGGAATAACATTTAGGTACGGTTTAAATACTAG-----AAAACGGCGGGGAATCTAAAgaa--gtaaaaactgaaaacaaagacCACGGGTGGAGAATAGAAACTAGTAGACAt--------------------------------------tacaaaaattg
i caeRem4.Crem_Contig15 C 0 I 27
s caePb3.Scfld02_0       3605593 247 -  4147112 CTTGCATAAATAAATCTATAGTCGGTAACTACCACCACCACACGAAAACATAAATCAGAATCAGTTCTGTTCAAATTCTCATGAGAGAAGA------------GTCGTTAA--AATAGAGGACAGGCACATATTATATACTGA-----GAGACTgtgaaaaatccattg------aaaaaatgaaagaaactgGTAGACATTAAGAATATTGGCAAGAAAAAATCCTTCTCAACTTTCATTAATGTGAAATGTAAGAGTGTATACACATATA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=-1279.000000
s ce10.chrX              2970161 12 + 17718866 TC--TTAATTCAAA------------------------------------
s caePb3.Scfld02_0       3605840 50 -  4147112 TCTATGAATCCAAGTGTACACTCCTCCTACTTTCATATTTGATAGAGTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I
e caeRem4.Crem_Contig15   432202 27 -  1794024 I

a score=-11379.000000
s ce10.chrX              2970173 172 + 17718866 ------------AAATGTCACTAGATGCAAAACACTAAGGAGAAATGTATAGCCACCCAGTATTTGTTTTTT-GTTTGGAGT----TTTTTTTGTCGATTTGTCTTCGTCCGATGTTCAGCGGGGTAACAGACATAATTTCAAC----------AAATGAAAGCCAAGGACAAGAGTTTTTCTTTTTTTTTAAACTCAA--------------------
s caeRem4.Crem_Contig15   432229 189 -  1794024 ------------AACTTTCATTAATGTGGAATGAAGGGAGAG-TGTACATACTTAC---ATATTTGATATAACATGTGGTATA---Tgtaattctagattt---ttcgaTGGATGATTCTCCGACTGAAAGACAAAAA-------GTGGTAGGAGAATG-AAGAGAATAACATgcaatgtttttgttttgttgtttcgttttcatatttttgggTTCTG
i caeRem4.Crem_Contig15 I 27 C 0
s caePb3.Scfld02_0       3605890 183 -  4147112 ATGTGTTTCTAGATGCTTCGTTAGAGACAAAAGAGCGGTGAG-AATA-------AC---ATGAAAAACATCA-GGGAGGCGTGtcctgttgtttttgtttt---ttctttcgttatttttttgggttcggCCCCTATATTCACCCGTAGTTTTCGATT------CATCAACACCGGATCGAAATCCCGTGACAACTCAACTCAA---------------
i caePb3.Scfld02_0      C 0 I 238
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=91.000000
s ce10.chrX              2970345 1 + 17718866 A
s caeRem4.Crem_Contig15   432418 1 -  1794024 A
i caeRem4.Crem_Contig15 C 0 I 131
e caePb3.Scfld02_0       3606073 238 -  4147112 I
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=0.000000
s ce10.chrX              2970346 55 + 17718866 CCACGAGACACTGGATTCAACTTATGTAAGAATGCTGGTCTTGTGATGTTCCCTT
e caePb3.Scfld02_0       3606073 238 -  4147112 I
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I
e caeRem4.Crem_Contig15   432419 131 -  1794024 I

a score=-839.000000
s ce10.chrX              2970401 161 + 17718866 GATGTATGATAATGACGC--CTGATGTTCGA---AATGACTAGTATCACTTGACAGGAAGTAGG---TTAACACCA---------AAAATATAAAGTT---TTCACACAAAATTTCTAACCATACATCAACTAGAACCAAGCTGTGAGTTAACTCCGAAA---ATGGTTTTCAAAAA---AATCTTC
s caeRem4.Crem_Contig15   432550 166 -  1794024 gatttgtgaTGACAACACGACAATTTTTCGACCGACTGACTCCCATGGCGCGAGGCGGGGTAGGAGTTCGCCACCAGTTGACCACGCGATCGAGAGTTGGGCGCATGCAAAAGTACAGGTC--------------------TTGTGA-TTGACCTCAAGACGGATGATGTACGACGAGTGATTTTTC
i caeRem4.Crem_Contig15 I 131 C 0
e caePb3.Scfld02_0       3606073 238 -  4147112 I
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=-10197.000000
s ce10.chrX              2970562 137 + 17718866 -------------------CATAAATTAGTGGCCAATCGTGAAGCCTTATCATC----------------------------------TACATTTGTTTCAAATAATGCGAACAGATTGTGAAA----TTTGAA-AACT----TATACAAGCAAAGTTTGAGTATCTTCAAAAAATGAATTGAATTATTC---------AAATAATTC----
s caeRem4.Crem_Contig15   432716 194 -  1794024 TATCGGATGGGGATTACATGACAAACTAGT-----ATC---AGATCTGATAAAAATAACTTTGGAGTGATTAGAATTTTAATCTAGGTTACAAGtttttttGGTCATGCGATAATCATATGGAA-CGGTTGGTATAATTTCGACACCGAAATAcaattat----tcttcaaaaaccgTTTTG-----TTCGATAACCAAGGTTGTTTCCCGC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3606311 109 -  4147112 -------------------CACAAACTGGT-----ATCCTTATCTCTTATCAAA----------AGTG-------------TTCAGGGTAC-------TGtagacat-tgaaaa--aaatggaagctgTTGGGA-AGTT----CACCGGAATGTAGTC-----------------------------------------GAATTTTTACCTC
i caePb3.Scfld02_0      I 238 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17708271 1582 - 21540570 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=5817.000000
s ce10.chrX              2970699 79 + 17718866 -------AGAACTAATTCATTTGATGATTGATGGTTGATCTACATGTTGAAAAGTT----------TGAAATTGAAAAAAAAGTGGGGGGGGGGGG
s cb4.chrX              17709853 85 - 21540570 ------agcaATGATCC-AGTTCAAGTTTGATGCCTGATCACC---CTGAACACTCACACtcgaaataaaattgaaaaatttg-gcgGGAAAGTTG
i cb4.chrX              I 1582 C 0
s caeRem4.Crem_Contig15   432910 68 -  1794024 -------ACAACTAACC-------TGATTGGTGATTGGTCAACTTGTTGAACActc----------cgaaattgaaaaac----gggggaaagttg
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3606420 73 -  4147112 AATTACTCTAACTGACC-------TGGTTGATGATTGACCGCCAAGTTGGACATTC----------CACAATTGCAAa------gtggaaaagttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e caeSp111.Scaffold582    437513 1344 +   484378 I

a score=67189.000000
s ce10.chrX              2970778 316 + 17718866 GGA---------------------ATGAAAA------A-TGAGAGTGGTGATCAAAAACAAGGAAAA---TA----------CTTGAGGCGGGGTTCTCACCCTGTTC------------------------------CTGTCCTCTTACTCCCTTTtctc---------tctctctctcactctctctctacctctatctATGTTTCCCGCTC-CTTTTCGATCTATCTTGTC--GTCCTC-CTATCTAACTGAAAATTTATTT-----TTTTCACAATTTT-TACATCACATAAACAGA-----AAATGGAAG---ACCGG-GCCGCTCACAGCC--CCAGGGCC-------TAGTGAC-AAAACAAC-AAGAGCGAACGAACGAGGCGGGAGGAAGAGAGGAATGCCTGAAAAGATGGAAAAC
s cb4.chrX              17709938 346 - 21540570 GAAGGCAGGTTGTTGAGAAGGGCTGGGGAGGACGAAAA-TGAGA---GTGATCAAAAAcaaggaaacattttttttgttgtgtttGAGGCGGGGTTCTCACCCTGTTCgctatgtgtgtgtgtgtgttgtAGCGCCCactcttcatct-----tttttttc---------tctctcgctCACGGTCGCCCCTCC-----CTATGTTT-TCATTC-ATCTTC---CTATCTTGTCGTGTCTTT-CTAtctaactgaaattttttctgccGATGTGCCCCA--CT-AACATCACATAAACAGAAATGGAAAAGGAAACACACAAT-----CGCCCTG------GGGGCACCAAAGATAG------------------------CAT---------TGGAGGAAAATAAATTCTG----GATGAAATGG
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   432978 259 -  1794024 aaa---------------------atggagG------A-TGAGA---GGgatgaaaaacaaggaaacattt-----------tttgaggcGGGGTTCTCACCGTGTTC---------------------------------------------CTGTCCTC---------CTACTCGCACACTTTCTCTCCT-----------------------ATTTTC---CTATCTTGTC--GTCTTT-CTAtccaactgaaattttctct-----------------t-tgcATTAcataaacacaaa---aaatggaag---acaAG-----CGCCCTGCC--CCGAGGGTCTTCAGATAGTGAC-AAAACAAC-GAGAACGAACTAC---------AAGAGAGAAGGAATGACTGAAAAGATGAAACAA
i caeRem4.Crem_Contig15 C 0 I 2
s caeSp111.Scaffold582    438857 286 +   484378 gaa---------------------atgaaaa------attgaga---gtgATCAAAAACAAGGAAACATTTC----------ATCGAGGCGGGGTTCACACCGTGTTC------------------------------CTGTCCATC------CGCCCTTC---------CAcctctcactttttttctctt----------------tttctctattttc---ctactttgtc--gtctttcctatctaactgaaaatttcttt-----------------tctacaTCGCATAAACAGAA----AGATGGAAG---ACAAG----CCGCACTGCCCGCGGGGGCCTCACCGATAACGACCAAAACAACGGAGAACGGACGTC------GAGAGGAAAGAAGGAATAgctgaaaagatgaaaaac
i caeSp111.Scaffold582  I 1344 C 0
s caePb3.Scfld02_0       3606493 288 -  4147112 aaa---------------------atgggaa------a-tgaga---gtgatcaaaaacaaggaaacatttt----------tttgaggcgGGGTtctcaccctgatc------------------------------ctatccaac------ctctcttcactttccctctcctccatctccctctctccc----------------tttttc-attttc---ctattttgtc--gtcttt-ctatctaactgaaattttcttt-----------------t-tacatcacataaacagaa----aaatggaag---acaaGCGCCCCACACTGCC--CCAGGGCCTC-CAGATAGTGACAAAAACAAC-GAGAACGGACGGC---------AGGAAAAGAGGAATGactgaaaagatgaaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I

a score=1326.000000
s ce10.chrX              2971094 3 + 17718866 CTT
s caeRem4.Crem_Contig15   433239 3 -  1794024 CTT
i caeRem4.Crem_Contig15 I 2 I 7
s caeSp111.Scaffold582    439143 3 +   484378 cct
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3606781 3 -  4147112 ctT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17710284 5 - 21540570 I

a score=-703.000000
s ce10.chrX              2971097 18 + 17718866 ACCTCCCTCTTCGCTTTC
s caePb3.Scfld02_0       3606784 13 -  4147112 CTCACACTAGTgg-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17710284  5 - 21540570 I
e caeSp111.Scaffold582    439146  0 +   484378 C
e caeRem4.Crem_Contig15   433242  7 -  1794024 I

a score=12517.000000
s ce10.chrX              2971115 151 + 17718866 CATTCCCTACTTTTTATCTCTGCAtctctctctctctctc--tttctctctACTGCCACTTTCAGAAAAGAGAGGGCG---GTGGCGCTCTAT-CTACACGTTTGTTGCAT----AGTCGCGGTGACACGTCACAAATAGGTCTTACAACGAATCAGAG--------------------------------AC
s caeRem4.Crem_Contig15   433249 154 -  1794024 ----------CATCTCTtgctgtttcattttttcttactc--tCTATCTCTGCTgccactttcagaaaaatgagggcG---GTGGCGGTGACT----TGTGTATGTTGCATACAAACTTAG----ACACGTCACAA---AA---TGAAACGAAGTGGAG------AGAACACTACCACACCACAGAA----AC
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    439146 141 +   484378 --------------------tcttttttcctctctttatC------TCTTTGCtgccattttcag-aaaatgagggCGGT-GTGCCTATCTCT----CATGTATGCCAAAT----GCTTAT----ACACGTcacaaataaa---gaaaa--------agccTCC-AGAACACAACTATAACTAAGAACcaaac
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3606797 158 -  4147112 --------------tctctcctcttttttctctctttatctatctatctttGCTGccactttcagaaaaaggagGGCGGCGGTGCCTATCTCTTGTGTATGTATGTTGCAT----ACTCATATAAACACGTCACAAGTGAA---TGAAA----GTGGAGCTTTCGAAAGAACAACCACATC----------AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   299433 1133 +   357190 I
e cb4.chrX              17710284   5 - 21540570 I

a score=152792.000000
s ce10.chrX              2971266 475 + 17718866  
s cb4.chrX              17710289 411 - 21540570  
i cb4.chrX              I 5 I 4
s caeRem4.Crem_Contig15   433403 444 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 4
s caeSp111.Scaffold582    439287 446 +   484378  
i caeSp111.Scaffold582  C 0 I 35
s caePb3.Scfld02_0       3606955 424 -  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   300566 472 +   357190  
i caeJap4.Scaffold17990 I 1133 C 0

a score=-287.000000
s ce10.chrX              2971741 1 + 17718866 A
s cb4.chrX              17710704 1 - 21540570 G
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig15   433851 1 -  1794024 A
i caeRem4.Crem_Contig15 I 4 C 0
s caePb3.Scfld02_0       3607382 1 -  4147112 C
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   301038 1 +   357190 a
i caeJap4.Scaffold17990 C 0 I 198
e caeSp111.Scaffold582    439733 35 +   484378 I

a score=-2431.000000
s ce10.chrX              2971742 39 + 17718866 TCGATGCCG-------CAGGCAACACAGTGCTGTGCGGAGTCTCGC
s cb4.chrX              17710705 21 - 21540570 TGG-------------CAAAGAATA---TTT------GTGTCG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   433852 40 -  1794024 TGGACGGcagtgaaaacgaaaaata---tttCTATCGGAGTCG---
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3607383 33 -  4147112 TCGGCggca-------caaaaaaga---atttctatGGAGTCG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301039 198 +   357190 I
e caeSp111.Scaffold582    439733 35 +   484378 I

a score=19222.000000
s ce10.chrX              2971781 72 + 17718866 AGTGATGTTCGCTTTTCTATGAGTATGAGTCACCAGT-----------GGGCTTTATGTTGTTAT-CGAATTTTCTGGAATGTT
s cb4.chrX              17710726 76 - 21540570 TGTGATGTTCGTTTTT-TGTGACATTGAGTCTTCAGCCGAAAGGCCAGAGggagttttt-------ggagttttctggaatgtt
i cb4.chrX              C 0 I 144
s caeRem4.Crem_Contig15   433892 74 -  1794024 GGTGATGTTCGCTTTT--------TTGAGTCATCAATGGAGAGGCC--GAGAAGTTTGTTGTCACgggaattttctggaatgtt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439768 70 +   484378 GGTGATGTTCGCTTTT---TGACAATGAGTCATTGAGAAA-----T--GGGGAGTTTGTTGTCAc-agatttttctagaat---
i caeSp111.Scaffold582  I 35 C 0
s caePb3.Scfld02_0       3607416 74 -  4147112 GGTGATGTTCGCTTTT---TGACAATGAGTCATCAATAGA--GTCG--GAGAGGGGTGTTGtcacaaaacttttctagaaT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301039 198 +   357190 I

a score=3418.000000
s ce10.chrX              2971853 32 + 17718866 TTCGTGGTCTTCATCTCGTTGACCATGCAACA
s caeRem4.Crem_Contig15   433966 12 -  1794024 --------------------atccatgaaaca
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439838 15 +   484378 -----------------gtTGACCATGAAACA
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3607490 15 -  4147112 -----------------GTTGACCATGAAACA
i caePb3.Scfld02_0      C 0 I 135
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I

a score=-2839.000000
s ce10.chrX              2971885 33 + 17718866 -ACACCCGCATATTTCATCACTCAAAGTTTCCTA
s caeRem4.Crem_Contig15   433978 18 -  1794024 gaaac---------ttaCACTTCCCTG-------
i caeRem4.Crem_Contig15 C 0 I 42
s caeSp111.Scaffold582    439854 21 +   484378 -AGACCAG------TGATGAATCAGGGT------
i caeSp111.Scaffold582  I 1 C 0
e caePb3.Scfld02_0       3607505 135 -  4147112 I
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I

a score=-1752.000000
s ce10.chrX              2971918 89 + 17718866 TCTCGGAAATAATTTTAATTTCTGAAAACGAAGGAAATATTTGTGTTTTTTTTAACTC--AATCTTTAACCGTAGCAATTTTGCCTAATTA
s caeSp111.Scaffold582    439875 33 +   484378 --------------------------------AGAGACGTTTGT----TGgtcaattcgaaaatttcaa----------------------
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3607505 135 -  4147112 I
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I
e caeRem4.Crem_Contig15   433996 42 -  1794024 I

a score=507.000000
s ce10.chrX              2972007 16 + 17718866 TTTGCAAACCAGTGGA
s caeRem4.Crem_Contig15   434038 12 -  1794024 ttcaaaaaccaa----
i caeRem4.Crem_Contig15 I 42 C 0
s caeSp111.Scaffold582    439908 11 +   484378 -----aaaccaataaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3607505 135 -  4147112 I
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I

a score=-36870.000000
s ce10.chrX              2972023 302 + 17718866 TTGATTAAAAACCGTTTCTATAGGGTTAAATTTATTATGAAATA----TCCGAAAAACCTTTTCAA--AAAATTTTGCG-------ATTTTTTTTTAGTCCAAAAGTGGTGAAATAtgaggatatctaaaccactgtcacatgttcggactctacaatgttaaaattttttttttt----aaacataattagaacgtaaaactgaaatcataaaaaaagttttttatcgtcgatttccaaaaaaatttgtgaaaaattgaattttcaccgctttttgAAATGAGGTTTTTGAAGTATTTTATTATGTTAGTTGGGCATT
s caeRem4.Crem_Contig15   434050 131 -  1794024 -------------------------taaaaatttttgaatgtgaaacttttgagaagattTCGACATCGAAAtat---g-------atgttttttt------------------------------------------------------tgttttttttttggttttttttaccT----ACTCCAGATCTCAATT----ACTGATCTAAAAA-----------CACCTGGAATTGTTA--------------------------------------------------------------------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    439919 181 +   484378 ctttttgaa----------atgtgatTCAAATATCTGAGAGTAA----ATCTAGAGTTGTTCGAAG--ggaaact---g-------attttcattt--------------------------------------------------------tatagaCCGGAAATCGTCACAATC----AAACAAAATGCGTAGT----tatgaaatttaaa-----------ttcctTCATTTGACGTAGa-----------------------ttatatttctgaaaacacttATTC--------------CGATACCTGACCCTT
i caeSp111.Scaffold582  C 0 I 72
s caePb3.Scfld02_0       3607640 205 -  4147112 CTGATAGAA---------------ATCAAGCTAGTTAAACTTAC----TTTTAAAATTCCTCTAA---TAAAGCT---GCactcaaaatttcactta---------------------------------------------------CCAACATATAATAAAAAACCTTTTGGTTtgtgaaacaaattttcaag-------gGACATTC--------------TATCTTGTTTTCAAGGAGA------------GCAGGAATTTCTCCTATTTCCAGCAAAATTAGTTC---TTTTCGAATTACGAAAAATGAGTA--
i caePb3.Scfld02_0      I 135 C 0
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I

a score=-8252.000000
s ce10.chrX              2972325 174 + 17718866 TTTTGCACTATATGAATGGTTTTTGACAATTTCGCCATCTAGTTCCTCATAAATTATTGTTACTGAGCCTTATCAACCTTATCTGAGCCCTACTCAAACATCGCAGATCTAGAAGCATTTCTTACCTTGAATTTCCGATGTCATCAAGTATATACC--------AGAATTCAGCATCCCCGA--------
s caeRem4.Crem_Contig15   434181  98 -  1794024 --------------TTTGATACTT----ACCTCA---------------------------------------------TACATGGATCTTTCTTAACTTGCTCTCCTCAATG-----------------------------ATTAAGCTCTCGGACgatgaaaaatattccaattccCAGAAAAGACGA
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3607845 140 -  4147112 -------------GCAAGATATTC----ATCTGAGTATCCAATTTCT------------GTAATGTGCATAATAATTAGTATAATAGCCTTACTCAAATTCATCATATCGATG----TTCCTTA--------TTCCTGAGATATGCAGCATTTGGA-GCCTCGAAGTGTTCGGGTTCCCAGA--------
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I
e caeSp111.Scaffold582    440100  72 +   484378 I

a score=6549.000000
s ce10.chrX              2972499 31 + 17718866 GAT-------GCACACCGTGGGCGAC---GAAGAAACTAAC
s caeRem4.Crem_Contig15   434279 29 -  1794024 --A-------TGGCGAAGTGGGCGGG---GAAAAAACTAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    440172 31 +   484378 gaa-------TGACGAAGTGGGCGGC---CAAAAAACTAAC
i caeSp111.Scaffold582  I 72 C 0
s caePb3.Scfld02_0       3607988 41 -  4147112 GAACAAATGGTGGCAGTGTGGGCggcgagaaaaaaactaac
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17990   301039 198 +   357190 I
e cb4.chrX              17710802 144 - 21540570 I

a score=6990.000000
s ce10.chrX              2972530 14 + 17718866 AATGCCTGAAAAGA
s caeRem4.Crem_Contig15   434308 14 -  1794024 AATTCCTGAAAAAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    440203 14 +   484378 ATTGCCTGAAAAAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3608029 14 -  4147112 aatgcctgaaaaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   301237 14 +   357190 aaaacatgaaatga
i caeJap4.Scaffold17990 I 198 C 0
e cb4.chrX              17710802 144 - 21540570 I

a score=35592.000000
s ce10.chrX              2972544  96 + 17718866 AAAGTGGGAACGACACACAAATGT----CATGGGACA----------TTTGACCT-CGTGATCATATTTCACATAAACATTCGTTTTCAT--GAACACATAAAAA------------------TGAGTAAT
s cb4.chrX              17710946  63 - 21540570 AAACTAGCAAAGGCAC---AAAAT---------GTCA----------TTTGACCCACGTGATCGTATTTCAAGTAAACAT---------G--GAAC-----------------------------------
i cb4.chrX              I 144 I 11
s caeRem4.Crem_Contig15   434322 101 -  1794024 ----------AGACAC---AGTGT----CATGGGACA----------TTTGACCT-CGTGATCATATTTCACATAAACATTCGTTTCCAT--GAACACATAAGACACATTTTGTTGTCTTCGCTGAGTAAT
i caeRem4.Crem_Contig15 C 0 I 118
s caeSp111.Scaffold582    440217  98 +   484378 ---GGTGGAATGACAC---AATGT----CATGGGACA----------TTTGACCT-CGTGATCATATTTCACATAAACATTCGTTACCAT--GAACACATAagacacatttt----ttttcgttg------
i caeSp111.Scaffold582  C 0 I 16
s caePb3.Scfld02_0       3608043 111 -  4147112 --aaatcgaatgaCAC---AATGT----CATGGGACA----------TTTGACCT-CGTGATCATATTTCACATAAACATTCGTTTCCATAAGAACATACAAGACAAATTTTGTTGTCTTCGTTgagtaat
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17990   301251  87 +   357190 ---aacgaaacGACAG---TGAATGAGGCATGGGACGGATGCCTGACCCTGACCT-CGTGATCATATTTCACATAAACATTCGCCTCCAC--ACAA-----------------------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-16791.000000
s ce10.chrX              2972640 98 + 17718866 AC-----------------TTACAAGGAACATTTTTGTGTGTCAGGTGGAG--GCAAAAAAATGGCAAAAAATTATTATCAAGTCTTGAAGA-----AACTGTGTTTCCTATCGGAGTAATG
s cb4.chrX              17711020 83 - 21540570 A------------------TTTTAAGGTATTTTTG-GCAGGaaatggcaaa--aaataaaTGGGGAAAATGAAC-TCATC-AGAGGTGCAAAATGGGGAATG----------------AATG
i cb4.chrX              I 11 I 7
s caeSp111.Scaffold582    440331 92 +   484378 AGTTGAAGTGGAGgttcaatttcattg-aaatatg---aagaaaagggaaa--gaaagGAGCTGAAAAACAGACTTGATC-GGAGGTGAG-------AACTG----------------AATG
i caeSp111.Scaffold582  I 16 I 1
s caePb3.Scfld02_0       3608177 79 -  4147112 aa-----------------tttcatcgaaaatttg---aaggcAGGGGAAGTCGAGAAGagctggaaaataaaa-tgatc-aGAGGCgagaa-----aactg----------------aatg
i caePb3.Scfld02_0      I 23 I 1
s caeJap4.Scaffold17990   301338 48 +   357190 ---------------------ACAACGAACGATCT-----------GGAAA--CAATACAGACTGAAAGT-----TTAGG-GTAGGTA----------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig15   434423 118 -  1794024 I

a score=91293.000000
s ce10.chrX              2972738 185 + 17718866 AATGAAAAGACAACAATTGCAAGACAC------------------TTC----AATTA-GCTCCAC----CTTCTT-TT----GAAGACCA----TATATACAATTTGGGTGTGGT-----CGACAATGATTAATC---GG----TGGCGCGGCTTTTCACTGGGA------AAATGA---------------AAAATACACACGTTCCTTCTTCT--CATCTTT-TTTTCAAGGTCATTAGGGCA--GTGTTTCATAGT
s cb4.chrX              17711110 239 - 21540570 AATGAAAAGACAACAATGC-TAACcgcctctctttttttctctcgttttccaAATTAGGCTCCAC----CTCTCT-CTTTCGGGAGACCAATTGAATATACTGTTTGGGTGTGGTCGGTGCGGCAGTGATTAATCGCTGG----AGG-ACTGCTTTTAGCAGAAAGACGATAAAGATAAAAAGGAAGACAGTGAATAATTCATGTTCTG--------ATTTTTG-TTCGCAAGGTCATTAGGGCAGTGTGTTTCATCGT
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig15   434541 204 -  1794024 aatgaaaagacAACA------AAACGCCTCTTTC-----------TCTGCCCAATTAGGCTCCAC----CTCTTT-TT----GAAGATCAATCGAATATACTGTTTGGGTGTGGT-----CGACAATGATTAATC---AG----TGG-ACTGCTTCTTATAAGGGGA----AAAGACAGAGAA---------GAATTATTCATGTTCCATCCATTCCGCTTTAT-TTTCCAAGGTCATTAGGGCA--GTGTTTCATCGT
i caeRem4.Crem_Contig15 I 118 C 0
s caeSp111.Scaffold582    440424 192 +   484378 ATTGGAAAGacaacaaatgaaaaacgc------------------CTTTCCAAATTA-GCTCCAC----CTCCTTGTT----GAAGACCAATCGAATATACTGTTTGGGTGTGGT-----CGACAATGATTAATC---GG----TGG-ACTGCTTCTCTAAAGGG------AAATAGAGT------------GAATTATTCATGTTCCATC------GTTATAT-TTTCCAAGGTCATTAGGGCA--GTGTTTCATCGT
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3608257 194 -  4147112 aatgaaaagacaACAATGCAAAGACGC------------------CTTTACAAATTA-GCTCCAC----CTCCTT-TT----GGAGACCAATCGAATATACTGTTTGGGTGTGGT-----CGACAATGATTAATC---GG----TGG-ACTGCTTCTCTTGGGGGGAA---AAAGAGAGT------------AAATTATTCATGTTCCATC------GACATAT-TTTCCAAGGTCATTAGGGCA--GTGTTTCATCGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   301386 183 +   357190 AATAAAAAGATGATTAgtta-----gc------------------tccgcccacttt-gttTCTCTTTTCTCTTC-TT----G--------------CTACTTTTTGGGTGTGGT-----CGACGGTAACTAATT---GGTCAATGG-GGTGTTTTTCTAG----------GACGAGAGT------------GAAATATTCATGTTCCTTTCTTCCCGCCAAATGTTTCCAAGGTCATAAGGGCA--GTGCATTACCGT
i caeJap4.Scaffold17990 C 0 N 0

a score=3820.000000
s ce10.chrX              2972923 4 + 17718866 GTTC
s cb4.chrX              17711349 4 - 21540570 GTTC
i cb4.chrX              C 0 I 261
s caeRem4.Crem_Contig15   434745 4 -  1794024 GTTC
i caeRem4.Crem_Contig15 C 0 I 315
s caeSp111.Scaffold582    440616 4 +   484378 GTTC
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3608451 4 -  4147112 GTTC
i caePb3.Scfld02_0      C 0 C 0

a score=-1060.000000
s ce10.chrX              2972927 16 + 17718866 CGTGAACGTTTTTCAA------------------
s caeSp111.Scaffold582    440620 34 +   484378 GCAGTCTGGTTTTTGATACTTCAACACATCGGAA
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3608455 16 -  4147112 GTTGGGTGGTTTTTGA------------------
i caePb3.Scfld02_0      C 0 I 305
e cb4.chrX              17711353 261 - 21540570 I
e caeRem4.Crem_Contig15   434749 315 -  1794024 I

a score=1362.000000
s ce10.chrX              2972943 122 + 17718866 GGTATAAATGTACTTTCAGCAGGTATTATATTATTTCTTCGTGTTAAATGAATTATTAGAAGAACGAAACAAAAAATTTACGGTTTACAAGT---GTGGGGAAAAATGATCGCTAGAAACATTTT
s caeSp111.Scaffold582    440654 117 +   484378 TGTACAAAAATACT---ACAAAGTAACTGAATAACTCTT----TCAGACAAATT-TTAGATGAACGTGACAAGATAATATAAGTTTATCAGTCTATTGGGAACAAAGTGGAACGAAAAACATTCT
i caeSp111.Scaffold582  C 0 I 58
e caePb3.Scfld02_0       3608471 305 -  4147112 I
e cb4.chrX              17711353 261 - 21540570 I
e caeRem4.Crem_Contig15   434749 315 -  1794024 I

a score=0.000000
s ce10.chrX              2973065 640 + 17718866  
e caePb3.Scfld02_0       3608471 305 -  4147112 I
e cb4.chrX              17711353 261 - 21540570 I
e caeSp111.Scaffold582    440771  58 +   484378 I
e caeRem4.Crem_Contig15   434749 315 -  1794024 I

a score=305.000000
s ce10.chrX              2973705 87 + 17718866 TCTTACAAATTCCT--CTATCCAGCTCGATCTGCAACTTGAAATAATATCTCTACATTTCGGCATCAGTCTATTGTTTATTCTGGTGAT
s caeSp111.Scaffold582    440829 78 +   484378 TCACACATAATCCTTCCTATTCATCTCGTTCCATGTCTTGGA-------TGCTACATTGCCAAACAAATATATAGCAAAT----ATCAG
i caeSp111.Scaffold582  I 58 C 0
e caePb3.Scfld02_0       3608471 305 -  4147112 I
e cb4.chrX              17711353 261 - 21540570 I
e caeRem4.Crem_Contig15   434749 315 -  1794024 I

a score=-488.000000
s ce10.chrX              2973792 3 + 17718866 AAA-
s caeRem4.Crem_Contig15   435064 3 -  1794024 -aat
i caeRem4.Crem_Contig15 I 315 C 0
s caeSp111.Scaffold582    440907 3 +   484378 -AAg
i caeSp111.Scaffold582  C 0 I 2
e caePb3.Scfld02_0       3608471 305 -  4147112 I
e cb4.chrX              17711353 261 - 21540570 I

a score=86117.000000
s ce10.chrX              2973795 459 + 17718866  
s cb4.chrX              17711614 502 - 21540570  
i cb4.chrX              I 261 C 0
s caeRem4.Crem_Contig15   435067 522 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 321
s caeSp111.Scaffold582    440912 511 +   484378  
i caeSp111.Scaffold582  I 2 C 0
s caePb3.Scfld02_0       3608776 520 -  4147112  
i caePb3.Scfld02_0      I 305 I 25

a score=-1182.000000
s ce10.chrX              2974254 14 + 17718866 CCAGTTTTTTTTTT--
s cb4.chrX              17712116 14 - 21540570 --ggtgctcatttttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    441423  8 +   484378 ------ctctattt--
i caeSp111.Scaffold582  C 0 I 427
s caePb3.Scfld02_0       3609321 14 -  4147112 CAAGAATTctgatt--
i caePb3.Scfld02_0      I 25 C 0
e caeRem4.Crem_Contig15   435589 321 -  1794024 I

a score=-3149.000000
s ce10.chrX              2974268  93 + 17718866 CA-CACTTTTTTTTTTAATTTTTGGAGGTTTTTTGG--CAATTTGAGCAAAA--TTT---------CATTGTGTGGGAA-AATCGATTTTTTTTGTGAAG----TTTCTTAT--------------
s cb4.chrX              17712130 110 - 21540570 cttaattgtttttgatgatgattcagtgtttttcggaatgtttttgatatga--tttcTGTGATGACATTGTTTTGAAATAGccgtaattttgaaaaaaaaccttttctcat--------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3609335  95 -  4147112 ---cattgttttt---------------cttttcag-------tagACAAGAGCTTTCTTTGTT--CATTTCCTCg----agcttccattttttgtcaaatgttttttttgtgtgaagtTGCTTGT
i caePb3.Scfld02_0      C 0 I 854
e caeSp111.Scaffold582    441431 427 +   484378 I
e caeRem4.Crem_Contig15   435589 321 -  1794024 I

a score=740.000000
s ce10.chrX              2974361 40 + 17718866 --ATTTTTAACTTACCAAGGCCGTTTTATGAAGTTTTTCTAA
s cb4.chrX              17712240 38 - 21540570 tattttttgagtcagaaa----gctttttcaagcttttcaaa
i cb4.chrX              C 0 I 878
e caePb3.Scfld02_0       3609430 854 -  4147112 I
e caeSp111.Scaffold582    441431 427 +   484378 I
e caeRem4.Crem_Contig15   435589 321 -  1794024 I

a score=0.000000
s ce10.chrX              2974401 1042 + 17718866  
e caePb3.Scfld02_0       3609430  854 -  4147112 I
e cb4.chrX              17712278  878 - 21540570 I
e caeSp111.Scaffold582    441431  427 +   484378 I
e caeRem4.Crem_Contig15   435589  321 -  1794024 I

a score=171.000000
s ce10.chrX              2975443 85 + 17718866 AATTCAAAAACTTTTTCATCTGCTCAAT-----ACACGAGAGCATTGTACTCTCCGG-----TGTACTCACTTGCAAAACTTTTCCG-GGTCCACA
s caeRem4.Crem_Contig15   435910 96 -  1794024 aatacacaatttttttcgagtcTTCAATCTTGCACTTGAGTTTAGTGTACCCACTGGACCCATGTGTTTCGTGAAAGTGCTTCTCCATGGAATGAG
i caeRem4.Crem_Contig15 I 321 C 0
e caePb3.Scfld02_0       3609430 854 -  4147112 I
e cb4.chrX              17712278 878 - 21540570 I
e caeSp111.Scaffold582    441431 427 +   484378 I

a score=-405.000000
s ce10.chrX              2975528 3 + 17718866 AAA-
s caeRem4.Crem_Contig15   436006 3 -  1794024 GAA-
i caeRem4.Crem_Contig15 C 0 I 5
s caeSp111.Scaffold582    441858 3 +   484378 -AAC
i caeSp111.Scaffold582  I 427 C 0
e caePb3.Scfld02_0       3609430 854 -  4147112 I
e cb4.chrX              17712278 878 - 21540570 I

a score=2038.000000
s ce10.chrX              2975531 16 + 17718866 -----CTCTAATATCCTTTTC
s cb4.chrX              17713156 16 - 21540570 -----CCCTCATCTCCTTCTT
i cb4.chrX              I 878 C 0
s caeRem4.Crem_Contig15   436014 16 -  1794024 -----acctcatcttcttttt
i caeRem4.Crem_Contig15 I 5 C 0
s caeSp111.Scaffold582    441861 16 +   484378 TTTTaccctcattttc-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3609430 854 -  4147112 I

a score=52143.000000
s ce10.chrX              2975547 192 + 17718866 ---CACTTTATCTTG---CCAATAAATCATTGTCACATACATAAAT-TG---GAAGAGGAAAACGAAAACTTC--GGTGCAAA--ACAG---CTTTCTCTG----CCTGCTGACTTTTTTGTGTAAGACGATTGGTGTCTCAGCGCCGACTGAAGAAGCAGGTGCTGCTAAA--TCC-----TC----CATCTGC------CCTCCCACAAC--TGAAATTTGCTCTTTCTG
s cb4.chrX              17713172 191 - 21540570 CTATTTCACAACTGGTGCCACATAAATCATTGTCAAATAC-------TGGAAGAAGGCGAAAAg-----cc-----gagcgaa--aaaattcgataatgTC----CCTGCTGACTTCTCGGTGTAAAAC--CGAGTCTCTC-------GT--CAGAAACAGGTGCTATCTCT--TCTGAGGATC----ACTTTGCTTTTTACCTCCCTC-ACCTTGaaatttgctctttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   436030 187 -  1794024 --------caactcg---CTCATAAATCATTGTCACATACataaaattggaagaagaggCAAAA-----CTTC--GGTGCAAACGAGAGCTCTTTTCTCTCGGGTTCTCCTGACTTTTT-GTGTAAGACGATTGGTGTCT--------AT--GAGAAGCAGGTGCTACTAAA--TTCCCAGATC----TCTTTG-------CCTCCCTC-AC--TGAAATTTGCTCTTTCTG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    441877 196 +   484378 ---tttttcaactgc---CTAATAAATCATTGTCACATACATAAAT-TG---AAAGGGCCAAAC-----TTTC--GGTGCAAG--TGAG-TCGTTTCTCTCTAGGCCTCCTGTCTTTTT-GTGTAAAACGATTGGTGTCTC---GTCGAT--GAGAAGCAGGTGCTACCTAAAATTCTCTGatccgtttttctt-------cctcccCC-AC--TGAAATTTGCTCTTTCTG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3610284 191 -  4147112 ---CATTTTCGCTTT---CAAATAAATCATTGTCACCTACATAAAT-TG---GAAGAGGCAAAC-----TTTCGGGGTGCAAA--AGAG-TCGTTTCTCTC-GGGCCTCCTGACTTTTT-GTGTAAAACAATTGGTGTCTC---GCCTAT--GAGAAGCAGGTGCTACTGAA---TCTCAGATC---TCTTTTG-------CCTCCCCC-AC--TGAAATTTGCTCTTTCTG
i caePb3.Scfld02_0      I 854 I 29

a score=-3957.000000
s ce10.chrX              2975739 17 + 17718866 ACGATTTTCGAATCTAT--------
s cb4.chrX              17713363 17 - 21540570 ----ttcttatgagaagaa----ga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   436217 21 -  1794024 ----AATGTAAGCCCAGAAACTCGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    442073 13 +   484378 ----TATGTGAGCCCAG--------
i caeSp111.Scaffold582  C 0 I 18
e caePb3.Scfld02_0       3610475 29 -  4147112 I

a score=172260.000000
s ce10.chrX              2975756 857 + 17718866  
s cb4.chrX              17713380 869 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   436238 865 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    442104 813 +   484378  
i caeSp111.Scaffold582  I 18 C 0
s caePb3.Scfld02_0       3610504 884 -  4147112  
i caePb3.Scfld02_0      I 29 I 28

a score=132.000000
s ce10.chrX              2976613 12 + 17718866 AACTCGGAAAAA
s cb4.chrX              17714249 12 - 21540570 aaatcaggaaaa
i cb4.chrX              C 0 I 188
s caeRem4.Crem_Contig15   437103  4 -  1794024 AAGT--------
i caeRem4.Crem_Contig15 C 0 I 16
s caeSp111.Scaffold582    442917 11 +   484378 aaatcagaaaa-
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3611388 28 -  4147112 I

a score=0.000000
s ce10.chrX              2976625 36 + 17718866 TTGAGAAGACATTTTTTGTCACATTCCTAACTTTCC
e caePb3.Scfld02_0       3611388 28 -  4147112 I
e cb4.chrX              17714261 188 - 21540570 I
e caeSp111.Scaffold582    442928  0 +   484378 C
e caeRem4.Crem_Contig15   437107 16 -  1794024 I

a score=-713.000000
s ce10.chrX              2976661 45 + 17718866 GTAATTCTTGTTCTTTGAATATACATTTCCTGAATGAATTTCCTG
s caeRem4.Crem_Contig15   437123 17 -  1794024 GTGGAATGTGTTCTTTG----------------------------
i caeRem4.Crem_Contig15 I 16 C 0
s caePb3.Scfld02_0       3611416 27 -  4147112 -------gtgttctttg--------tttttt---tgaaattcctg
i caePb3.Scfld02_0      I 28 C 0
e cb4.chrX              17714261 188 - 21540570 I
e caeSp111.Scaffold582    442928  0 +   484378 C

a score=-2112.000000
s ce10.chrX              2976706 45 + 17718866 TA-AAAAATGAAGTTTTCATCATTAGCGGCAGAGTAGCGTCAGTAG
s caeSp111.Scaffold582    442928 16 +   484378 ---tcagatgaag---------------------------tagatg
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611443 19 -  4147112 cAAACTGAAGaag---------------------------caaaca
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17714261 188 - 21540570 I
e caeRem4.Crem_Contig15   437140  0 -  1794024 C

a score=-56609.000000
s ce10.chrX              2976751 186 + 17718866 GAATTTTGTCAAAATTGACTTATTCACAGGTACTACCTTATTCAAAATTCACAGGCCCACTAATAC-AAAACAACTTAATATTTTAATAAAACACTCCAAA---------------------------------------------------AAAATTGTGAATTTTCAAACTTCCGGCATTATTTTATTTGTTAATTGCCACG----AATAATCA-AAGCTAAATTAAAATATCAACATT-----TC------
s cb4.chrX              17714449 210 - 21540570 gaatttttgaaatatcatttTA-----AGACGCTGC---ATTCAAAAC-------------AATAT-TAGAAACATGAataccgt----gaacactctaatagaaggccgcCCTGTACTGGCACTTTGAGCTTTATTATCTACAATtctatggaagatatcaaaaatgtgtcgacTGATTTAAttttggt------------------aatattatgacaatcattttattaattgacagattttcaatatctc
i cb4.chrX              I 188 I 155
s caeRem4.Crem_Contig15   437140 102 -  1794024 -----------------TTTTA---GCAGAC-TTGT---GCACAAATC-------------AGAAtccaaaaacataaatatc---------------------------------------------------------------------AAAAGCATAACAAGTG--------GATTGTAATTTAAG------------------AATTCCAC-acaa----------aaagggaaga-----aaaa----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    442944 124 +   484378 -----------------------------------------gaaaaaattgt-------ttattgGCTGCACGTTTAAACAGC------------------------------TGTTCTCG-------------------------------CAAAATATGTTCtttg--------ttttaaattctgGT-GTGAGAAAACAAGGAGAAgcaaaca-aaagaaaatctgAGAAATAGAATT-----AG------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611462  87 -  4147112 -----------------------------------------gaaaaaa-------------aatgtcaggaATTTGTAATAT------------------------------------------------------------------------AATGATGAACTTCA-----------TGAGTTTTgat------------------catattca-aaaattaatttatcaATCAGTTGT-----GT------
i caePb3.Scfld02_0      C 0 C 0

a score=-17446.000000
s ce10.chrX              2976937 152 + 17718866 AAAATTTCTTTAAATCAACTTCGTAAT-----TCTCtttttttttttgaaaaaaaatttttttctaatcattttttgttaagaaaattttttttttatttttttaaatttttttaaaattgaatttttG----TCAATCA--TACATGACATATATACCTGAA
s caeRem4.Crem_Contig15   437242  82 -  1794024 --------------------ctttaat-----taAGATTCTTTTCCGTGAAATC---------------------TATTCAGCATATCTGTCATTTATT-------AGTCTTTGTAATATAAAACa-------taaatttct---------------------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    443068 114 +   484378 ----------CAAG----ATTAGTAAT-----CgtgaatattttattgaaaagcttttttcattaagaCACTGTTCAATGTCAAAAACActtattttgt-------attttatgCAAAAGAAGTCTGCgaaacttcattt-----------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611549  77 -  4147112 ----------CAGATCTTATTTCCAATTCCAACATCAGAATGTTCCTGCAAACC---------------------CAATCTGCAAAAGAC----------------------------AGAAAacttca----ttaattt-----------------------
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17714659 155 - 21540570 I

a score=124190.000000
s ce10.chrX              2977089 295 + 17718866 CATACACTGCGAGAAAAAGCGCACAA------------CTCTCT------TCCTCAA-CTTCAGGATCATATATTCCATTTCAGCATTCTTCGATCTCCAACACCATTTTATATTCAGCAAGAGAAAGGCTCCGGTGGACGGCATTGAAGCTATTCAACGAGATGGGGCATCTATAAGGTTT-G---TTTGATAATCTGAAAAGGCATTTTTCTTCCAGAGAAAAACATCTTTCAC-------TTTTTGCAGTGAACACGCTGTTGTAAAGTATGCAAACGATGAAAGACCGGATGAGAAAGAAAAACAAGATCTCGAGAATATG
s cb4.chrX              17714814 283 - 21540570 CATTTCCTGCtagcgaaaa---aaaa---cttcattaCTTCTTTCTCCCAGCTcatattttcacatttc----ttc---tTCAGCATTCTTCGATCTCCAGCATCATTTCATATTCAGCAAGAAAAAAGCTCCCGTAGATGGCATCGAAGCTATTCAGCGAGATGGCGCAGCAATAAGGTTTGG---TTTGATCA----------------------TGTAAAAAATGTGTTATAG----TGTTTTCTCCAGCGAGCACGCCGTCGTCAAATATGCCAACGACGAGCGGCcagatgaaaaagagaaacaggATCTCGAAAATATG
i cb4.chrX              I 155 C 0
s caeRem4.Crem_Contig15   437324 292 -  1794024 catttcctgcAACCGGAGG---AAAATATCTGCAGTACTTCATT------ACTTATCTTCTCATATTTCTCCTTCC---TTCAGCATTCTTCGATCTCCAACATCATTTCATATTCAGCAAGAAAAAAGCGCCAGTCGATGGCATTGAAGCTATTCAGCGAGATGGCGCTTCAATAAGGTCT-G---TTCAATAA-----------------CTTTtcgaagaaaatatgtttttatttctgtttctttcaGCGAGCACGCTATAGTCAAATATGCGAATGACGACAGACctgatgaaaaagagagacaagATCTCGAAAACATG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    443182 263 +   484378 --------------------------------------ctctct------atc--tA-GCTCatatttctctattt---tccagcATTCTTCGATCTCCAACATCATTTTATATTCAGCAAGAAAAAAGCTCCGGTGGATGGCATTGAAGCTATTCAACGAGACGGCGCAGCAATAAGGTCT-GTTCTTCAATAACTCGAAAA-------CTCTCGCCgataaaaatgtgtttttt----ttctcatttcagtGAGCATGCTGTAGTCAAGTACGCGAATGATGAGAGACccgatgaaaaagaaaaacaagatctCGAGAATATG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611626 260 -  4147112 --------------------------------------ttctct------tccaata-tCTCATATTACTGCATTC---TTCAGCTTTCTTCGATCTCCAACATCATTTCATATTCAGCAAAAGAAAGGCTCCAGTTGATGGCATTGAAGCTATTCAGCGAGATGGCGCTGCAATAAGGTCT-G---TTCAATAACTTGAGAA-------CTCTTTCcga-gaaaatgtgttttta----tt-tcattccaGTGAACACGCTGTAGTCAAGTATGCCAATGATGATAGGCCggatgagaaagaaaaacaagatctCGAGAATatg
i caePb3.Scfld02_0      C 0 C 0

a score=3733.000000
s ce10.chrX              2977384 33 + 17718866 TTCAAAACAGTTTTAAGGATAGGAGTTCGTAAG
s cb4.chrX              17715097 33 - 21540570 TTTAAAACGGTTTTAAGGATAGGAGTTCGTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   437616 33 -  1794024 TTCAAAACTGTATTGAGGATAGGCGTTCGTAAG
i caeRem4.Crem_Contig15 C 0 I 2
s caePb3.Scfld02_0       3611886  2 -  4147112 -------------------------tt------
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    443445  0 +   484378 C

a score=0.000000
s ce10.chrX              2977417 2 + 17718866 TA
e caePb3.Scfld02_0       3611888 0 -  4147112 C
e cb4.chrX              17715130 0 - 21540570 C
e caeSp111.Scaffold582    443445 0 +   484378 C
e caeRem4.Crem_Contig15   437649 2 -  1794024 I

a score=-4014.000000
s ce10.chrX              2977419 193 + 17718866 TCAATTAGaaaaattgctcctcaggtgctaaaatggccaaatgtcatagttaaacgttacaaaaaaattttttgaaaaactttttattggcagtcaaaaagtgacaacaactgagtttttgcCGATTTTTTTTCAAATAATTTCATGCTCGAAGCCTTACAATGttaaaatattaatattttaaactttaatt
s caePb3.Scfld02_0       3611888  45 -  4147112 -----------------------------------------------------------caaaacagttttaagGA-----------TAGGAGTTCGTGAGTG------------------------------------------------------------GTGAACATGTTA------------------
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17715130   0 - 21540570 C
e caeSp111.Scaffold582    443445   0 +   484378 C
e caeRem4.Crem_Contig15   437649   2 -  1794024 I

a score=-1525.000000
s ce10.chrX              2977612 42 + 17718866 taattctttttttaaaatttaatccttattaaaaaatattCT
s cb4.chrX              17715130 24 - 21540570 TATTTcttattttga------------attgaaaaa------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3611933 14 -  4147112 -----------TAAA------------Acagaaatat-----
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    443445  0 +   484378 C
e caeRem4.Crem_Contig15   437649  2 -  1794024 I

a score=-11860.000000
s ce10.chrX              2977654 86 + 17718866 TCCGAAACAGTAGCAAGAACTgagatttttccaatttacaaaaaatcataaaaagtta-------gacaatttttttaaattatgttcactat
s cb4.chrX              17715154  8 - 21540570 -----------------------------------------------------------------aaaaactt--------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    443445 72 +   484378 TTCAAAACAGTGTTAAGGA-TAGGAGTTCGTGAGTATTCAACAAA--ATAAAAGTCTCAGAAAACATAAATTCGT------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611947  8 -  4147112 -------------------------------------------------------------------caattttc------------------
i caePb3.Scfld02_0      C 0 C 0
e caeRem4.Crem_Contig15   437649  2 -  1794024 I

a score=93503.000000
s ce10.chrX              2977740 187 + 17718866 gatatttagtaatcgggttgccaagaacataccttcaacaattccAGAAAATTCCGATATCGTGTACACACATCTACTACAATTATCACAATGCTATGAGGCCATGGCTAGGAACAACAAACTTATCGTTTTCACAAATGACATATCAGTACGGAAAGCATTCAACGGTTTAATTTATAATTGTGAG
s cb4.chrX              17715162 153 - 21540570 ---------tatttg-------------------------atttcagaaaactctgaTATAGTTTATACACATCTTCTACAACTATCACAATGCTACGAGGCGATGGCTAGGAATAACAAACTTATCGTTTTCACAAACGACATATCTGTAAGAAAGGCGTTTAATGGATTGATTTATAATTGTAAG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig15   437651 184 -  1794024 GATGTGTTGTATTCGGGTT---AGGGAAATGTGACTACTTGTTCCAGAAAACTCGGATATTGTCTATACACACCTTTTACAATTATCACAATGCTACGAGGCTATGGCAAGGAACAACAAACTAATCGTTTTCACCAATGACATATCTGTACGAAAAGCGTTCAACGGATTGATTTATAATTGTGAg
i caeRem4.Crem_Contig15 I 2 I 41
s caeSp111.Scaffold582    443517 145 +   484378 -----------------------------------------TTGCAGAAAATTCGGATATCGTATATACACATCTTCTCCAATTATCACAATGCTACGAGGCAATGGCTAGGAATAACAAACTTATCGTATTCACAAATGACATATCTGTTCGAAAAGCATTCAACGGATTAATATACAATTGTAa-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3611955 145 -  4147112 -----------------------------------------ttctagaaaattctgacaTCGTATACACACATCTTCTCCAATTATCACAATGTTACGAGGCTATGGCTAGGAATAACAAACTTATCGTATTCACAAATGACATATCTGTCAGGAAGGCGTTCAACGGATTAATTTACAATTGTGG-
i caePb3.Scfld02_0      C 0 C 0

a score=-5707.000000
s ce10.chrX              2977927 38 + 17718866 TGATTGGAAACAAAA--AAGTTCCAGCAAAATAAC-TGATT--------------
s cb4.chrX              17715316 38 - 21540570 ------Agaatag----aattttgaaaat-------tgatttttgaaaatcgagt
i cb4.chrX              I 1 I 2
s caeSp111.Scaffold582    443662 40 +   484378 -cactgaaaacaagaacaaTCATCATAAAAAGAACATG----TTT----------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3612100 40 -  4147112 -GATCAAAACTAA----AGTCTGTAtaataaaaatatgattttta----------
i caePb3.Scfld02_0      C 0 C 0
e caeRem4.Crem_Contig15   437835 41 -  1794024 I

a score=58285.000000
s ce10.chrX              2977965 83 + 17718866 TAGGCATGCGCACAGGCTTAGTTGCTGATTCACAAACACTGGAGATTACCGGAGTTCTTTCGGTTACGGACTTCATTATGGTA
s cb4.chrX              17715356 83 - 21540570 CAGGTATGCGAACAGGTTTAGTGGCAGACTCGAAAACGTTGGAGATTACTGGCGTATTATCGGTCACCGATTTTATAAtggta
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig15   437876 83 -  1794024 cAGGCATGCGTACTGGTCTAGTCGCTGATTCAAAAACATTGGAGATTACCGGAGTATTATCGGTTACCGACTTTATAATGGTA
i caeRem4.Crem_Contig15 I 41 C 0
s caeSp111.Scaffold582    443702 83 +   484378 TAGGTATGCGTACTGGTCTAGTCGCCGATTCGAAAACATTGGAGATTACAGGAGTATTATCGGTCACCGATTTCATTATGGTA
i caeSp111.Scaffold582  C 0 I 4
s caePb3.Scfld02_0       3612140 83 -  4147112 tagGTATGCGTACTGGTCTAGTCGCTGATTCAACAACATTGGAGATTACCGGAGTATTATCGGTCACCGACTTCATAATGGTA
i caePb3.Scfld02_0      C 0 I 39

a score=-443.000000
s ce10.chrX              2978048 3 + 17718866 TTT-
s cb4.chrX              17715439 3 - 21540570 att-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   437959 3 -  1794024 ATT-
i caeRem4.Crem_Contig15 C 0 I 35
s caeSp111.Scaffold582    443789 3 +   484378 -TTT
i caeSp111.Scaffold582  I 4 C 0
e caePb3.Scfld02_0       3612223 39 -  4147112 I

a score=977.000000
s ce10.chrX              2978051 10 + 17718866 GTTCATTGTT
s cb4.chrX              17715442 10 - 21540570 gttttttttt
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold582    443792 10 +   484378 GTGAATTGTT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3612223 39 -  4147112 I
e caeRem4.Crem_Contig15   437962 35 -  1794024 I

a score=333.000000
s ce10.chrX              2978061 17 + 17718866 G---------AATCTGTTTTTGGGTA
s caeSp111.Scaffold582    443802 26 +   484378 GCATaactttagtttttttttaggtA
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3612223 39 -  4147112 I
e cb4.chrX              17715452  3 - 21540570 I
e caeRem4.Crem_Contig15   437962 35 -  1794024 I

a score=0.000000
s ce10.chrX              2978078 657 + 17718866  
e caePb3.Scfld02_0       3612223  39 -  4147112 I
e cb4.chrX              17715452   3 - 21540570 I
e caeSp111.Scaffold582    443828   0 +   484378 C
e caeRem4.Crem_Contig15   437962  35 -  1794024 I

a score=342.000000
s ce10.chrX              2978735 20 + 17718866 AACTTGTAATCTTTTAAAAT
s cb4.chrX              17715455 20 - 21540570 aattcacaaCTTTTCTCCAT
i cb4.chrX              I 3 C 0
e caePb3.Scfld02_0       3612223 39 -  4147112 I
e caeSp111.Scaffold582    443828  0 +   484378 C
e caeRem4.Crem_Contig15   437962 35 -  1794024 I

a score=3285.000000
s ce10.chrX              2978755 10 + 17718866 TTTTCAGGTT
s cb4.chrX              17715475 10 - 21540570 ATTCCAGGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   437997 10 -  1794024 TTCACAGGTC
i caeRem4.Crem_Contig15 I 35 C 0
s caePb3.Scfld02_0       3612262 10 -  4147112 ttctcaggtC
i caePb3.Scfld02_0      I 39 C 0
e caeSp111.Scaffold582    443828  0 +   484378 C

a score=207132.000000
s ce10.chrX              2978765 361 + 17718866 TTAATGATGTTGTGGAAATATCGAGAAAATTTGGATGAGCTTAAGGGGACTCCACTGAGCCACGAGGATTTTCGGCAAATGGATATTGCTTATATGCCCATATCTAGATGGAAAGG------TAT------TATTTTATAATATACTA--TTGACCCATTCACTATGACTTTT-TTCAAGGATGTCTTGAAACGAAAGGACAATTAAAGCCATTCATCAATATTGGTTTGAAGGAGAGCATTTTTCGCGCTGTTGAATTGCTCACTAAATATAGAATTCATCGACTTCCCGTCATGGATGAGAAGACGGGAGATTGTGCGTACATATTGACACATCGTAGGATATTACACTACATTTGGAAGCATGTATGGATTTT
s cb4.chrX              17715485 369 - 21540570 CTCATGATGTTGTGGAAGTATCGTGAGAATCTCGACGAGCTTAAAGGCACACCGCTTAGCCATGAGGATTTCCGGCAGATGGACATTGCTTACATGCCGATTTCGAGATGGAAAGGTGGGATTAGAATGTTTATGTTTGCcgggattt--ttcaattt---attcttTTTCAC-TTC-AGGATGTCTCGAAATGAAAGGGCAGTTGAAGCCATTCATCAACATTGGATTGAAAGAAAGCATATTTCGGGCCGTCGAGCTGCTCACCAAACATAGAATTCATCGACTGCCGGTGATGGATGAGAACACGGGGGATTGTGCATACATTCTGACGCACCGTAGAATACTACACTACCTATGGAAACATGTATGTGTTTT
i cb4.chrX              C 0 I 1862
s caeRem4.Crem_Contig15   438007 369 -  1794024 CTTATGATGTTGTGGAAGTATCGTGAGAATCTTGACGAGCTCAAAGGCACTCCGCTAAGCCATGAGGATTTCCGACAGATGGATATTGCGTACATGCCGATTTCAAGATGGAAAGG------TAgattaattttgttttagGAAATTCAATTTAACTTCTAATTTTGTTTCGCATTT-AGGGTGTCTGGAAATGAAAGGTCAATTGAAACCTTTTATTCACATTGGTTTGAAAGAAAGTATATTCCGTGCTGTTGAATTGCTTACCAAATATAGAATTCATCGCCTTCCCGTCATGGACGAAAACACTGGAGATTGTGCATACATTCTGACGCATCGTAGGATATTACACTATCTTTGGAAACACGTCAgtatctt
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    443828 355 +   484378 CTTATGATGTTGTGGAAGTATCGTGAGAACTTGGACGAGCTGAAAGGGACTCCGTTAAGCCATGAGGATTTTCGGCAGATGGATATTGCTTATATGCCAATCTCTAGATGGAAAGG------TAGTCAC--TAGTTTTGATGATGATC--TTCAAA-------TAGGTTTCAT-GTC-AGGATGCCTTGAAACAAAAGGTCAATTAAAACCATTCATCAACATTGGGTTAAAAGAAAGCATCTTCCGTGCCGTTGAGCTGCTTACCAAATATAGAATTCATCGGCTTCCTGTCATGGACGAAAACACTGGTGATTGTGCCTACATTCTGACACATCGTAGGATATTACACTACATTTGGAAGCATGTAAGTCTT--
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3612272 359 -  4147112 CTTATGATGTTGTGGAAGTACCGTGAGAATTTGGACGAACTTAAAGGCACTCCGCTAAGCCATGAGGATTTTCGACAAATGGATATAGCTTATATGCCGATTTCGAGATGGAAAGG------TAGATTA--GATTGTTTCTCACGGCC--Gctaagaa---attcaatttcat-ttc-aggaTGTCTTGAGATGAAAGGTCAATTAAAGCCATTCATCAACATTGGGCTCAAGGAAAGCATCTTCCGGGCTGTCGAGCTGCTCACCAAATATAGAATTCATCGGCTTCCTGTCATGGATGAAAACACTGGAGATTGTGCCTATATTCTGACACATCGTCGGATATTACACTACATTTGGAAGCATGTAAGTATT--
i caePb3.Scfld02_0      C 0 C 0

a score=-2198.000000
s ce10.chrX              2979126 37 + 17718866 GTTTTCTTGTGTCTTCTTCATATTTAAAAGGATTTGA--------
s caeRem4.Crem_Contig15   438376 33 -  1794024 ---------tgttttttgtatatttgaGTA---TTAATCGTTTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444183 33 +   484378 ---ACTTAATGTGTTTTGAGTTGT---------TAGATCCTATCA
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3612631 40 -  4147112 ----CTTTGTGTGTTTTCTGTCGTTTAGTCAA-TTGATCCTATGA
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17715854 1862 - 21540570 I

a score=134255.000000
s ce10.chrX              2979163 235 + 17718866 TTTCAGTGTGCTCTACTACCAAAGCCGGAATGTTTGAGTCAACGAGTAGTGGACCTGGAAATAGGATCGTGGAAAAACTTGATATTTGTTAGTCGATGA-TTGTTTTGG---AATACAAAGAC-CAGCAAAAACATTTTCAGGCAAACGAACAAACACCGCTGATCGAATGCCTCGACATGTTGATTGACAATAACATCAGTGGTATTCCAATAGTTCAGAAAAATACTTTGAAAGTAAG
s cb4.chrX              17717716 236 - 21540570 TTCCAGTGCGCCCTTCTTCCTAAACCCGAATGTTTGAGTCAACGAGTGGTGGACCTGGAGATGGGAACGTGGAAAAATTTGCTTTACGTTAGTCGACGGCCCtttttgatacaaaaaaaacac-aataaCAAC---TTTCAGGCCGACGAAAAAACACCACTGATAGATTGCCTGGACATGCTGATTGACAATCATATCAGCGGAATTCCAATTGTCGAAAAACACACAATGAAGGTAAA
i cb4.chrX              I 1862 C 0
s caeRem4.Crem_Contig15   438409 235 -  1794024 CTTCAGTGCGCGCTCCTTCCGAGACCAGAATGTTTGAGTTCTCGAGTAGTGGATTTGGAAATTGGAACATGGCAAAACTTGCTATATGTTAGTCGTTGa-cttttttgaccaaaatgaaaaac-aacaacaaa---ttttAGGCCAACGAACAAACACCGTTGATTGACTGTTTGGACATGTTGATTGACAACCATATCAGTGGAATTCCAGTTGTGGAGAAGACAACTTTAAAGGTAGG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444217 235 +   484378 TTTTAGTGTGCTCTTCTACCAAAGCCGGAATGTCTGAGTCATCGAGTAGTGGACTTGGAAATGGGAACATGGAAGAACTTGCTATATGTTAGtcgatga----ttttttttcaaattgaaaacaaaaaacaagca-ATTCAGGCCGACGAACAAACACCGTTGATCGAATGCCTGGACATGTTGATTGACAATAACATCAGCGGAATTCCagttgttgaaaaaaatactcTGAAAGTAAG
i caeSp111.Scaffold582  I 1 C 0
s caePb3.Scfld02_0       3612671 238 -  4147112 TTTCAGTGTGCGCTGTTACCAAAGCCAGAATGTTTGAGTCAAAGAGTAGTGGACTTGGAGATGGGAACGTGGAAGAACTTGCTTTATGTTAGTCgatga-ttgttttttgtcaatttgaaaac-aaaaacaatcattttcaggCCGACGAACAAACACCTTTGATCGACTGCCTGGACATGTTGATTGACAATCACATCAGTGGGATTCCAGTTGTTGAAAAGAACACCATGAAAGTAAG
i caePb3.Scfld02_0      C 0 I 203

a score=-417.000000
s ce10.chrX              2979398 2 + 17718866 CT
s cb4.chrX              17717952 2 - 21540570 CT
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig15   438644 1 -  1794024 C-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444452 2 +   484378 CT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3612909 203 -  4147112 I

a score=-2743.000000
s ce10.chrX              2979400 33 + 17718866 GTCTGATGTAGAACAGGGTTC---CAAAAATCTGAC-
s caeRem4.Crem_Contig15   438645 28 -  1794024 --------CAGGTTGAGATCCGaacaaaaaactgga-
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444454 35 +   484378 -ACTGAT-AAAAGTGACTATAGGTCAAAGGATCGTTC
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3612909 203 -  4147112 I
e cb4.chrX              17717954 15 - 21540570 I

a score=544.000000
s ce10.chrX              2979433 41 + 17718866 TTTTT-------TGAAAATGGAAAAAATAAAATTGTGATTTCAGAATT
s caeSp111.Scaffold582    444489 47 +   484378 TATTTCAATGCatcaaagaataaaaaatcaaa-cgtGAATTCTGGACT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3612909 203 -  4147112 I
e cb4.chrX              17717954 15 - 21540570 I
e caeRem4.Crem_Contig15   438673  0 -  1794024 C

a score=0.000000
s ce10.chrX              2979474 930 + 17718866  
e caePb3.Scfld02_0       3612909 203 -  4147112 I
e cb4.chrX              17717954  15 - 21540570 I
e caeSp111.Scaffold582    444536   0 +   484378 C
e caeRem4.Crem_Contig15   438673   0 -  1794024 C

a score=1521.000000
s ce10.chrX              2980404 43 + 17718866 TTTTTTTATCAATAATGAGATATTCTTCGATATTTT-TCAATTT
s caeRem4.Crem_Contig15   438673 44 -  1794024 tttttttgtcattcatgAAAGATTAATTagttttctatcaattt
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3612909 203 -  4147112 I
e cb4.chrX              17717954 15 - 21540570 I
e caeSp111.Scaffold582    444536  0 +   484378 C

a score=61.000000
s ce10.chrX              2980447 2 + 17718866 TT
s cb4.chrX              17717969 1 - 21540570 -t
i cb4.chrX              I 15 C 0
e caePb3.Scfld02_0       3612909 203 -  4147112 I
e caeSp111.Scaffold582    444536 0 +   484378 C
e caeRem4.Crem_Contig15   438717 0 -  1794024 C

a score=-785.000000
s ce10.chrX              2980449 6 + 17718866 -TTTTC-A
s cb4.chrX              17717970 6 - 21540570 tttttt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   438717 5 -  1794024 -tcttt--
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3613112 6 -  4147112 -ttttca-
i caePb3.Scfld02_0      I 203 I 4
e caeSp111.Scaffold582    444536 0 +   484378 C

a score=156297.000000
s ce10.chrX              2980455 496 + 17718866  
s cb4.chrX              17717976 433 - 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   438722 465 -  1794024  
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    444536 459 +   484378  
i caeSp111.Scaffold582  C 0 I 175
s caePb3.Scfld02_0       3613122 456 -  4147112  
i caePb3.Scfld02_0      I 4 I 23

a score=3065.000000
s ce10.chrX              2980951 7 + 17718866 TTTTTGA
s cb4.chrX              17718409 7 - 21540570 TTTGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   439187 7 -  1794024 TTTGTGA
i caeRem4.Crem_Contig15 C 0 I 119
s caePb3.Scfld02_0       3613601 7 -  4147112 TTTTTGA
i caePb3.Scfld02_0      I 23 I 139
e caeSp111.Scaffold582    444995 175 +   484378 I

a score=45.000000
s ce10.chrX              2980958 5 + 17718866 ATTAC
s cb4.chrX              17718416 5 - 21540570 TTGAC
i cb4.chrX              C 0 I 293
e caePb3.Scfld02_0       3613608 139 -  4147112 I
e caeSp111.Scaffold582    444995 175 +   484378 I
e caeRem4.Crem_Contig15   439194 119 -  1794024 I

a score=0.000000
s ce10.chrX              2980963 788 + 17718866  
e caePb3.Scfld02_0       3613608 139 -  4147112 I
e cb4.chrX              17718421 293 - 21540570 I
e caeSp111.Scaffold582    444995 175 +   484378 I
e caeRem4.Crem_Contig15   439194 119 -  1794024 I

a score=716.000000
s ce10.chrX              2981751 30 + 17718866 TTAATTTTACGTCCATAAAAAAGCCAAATC
s cb4.chrX              17718714 27 - 21540570 ttaatttttcg---aaaaaccatcCAGATT
i cb4.chrX              I 293 C 0
e caePb3.Scfld02_0       3613608 139 -  4147112 I
e caeSp111.Scaffold582    444995 175 +   484378 I
e caeRem4.Crem_Contig15   439194 119 -  1794024 I

a score=331.000000
s ce10.chrX              2981781 3 + 17718866 AAA
s cb4.chrX              17718741 3 - 21540570 AAA
i cb4.chrX              C 0 I 11
s caePb3.Scfld02_0       3613747 3 -  4147112 agG
i caePb3.Scfld02_0      I 139 C 0
e caeSp111.Scaffold582    444995 175 +   484378 I
e caeRem4.Crem_Contig15   439194 119 -  1794024 I

a score=307915.000000
s ce10.chrX              2981784 578 + 17718866  
s cb4.chrX              17718755 546 - 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig15   439313 550 -  1794024  
i caeRem4.Crem_Contig15 I 119 I 6
s caeSp111.Scaffold582    445170 552 +   484378  
i caeSp111.Scaffold582  I 175 C 0
s caePb3.Scfld02_0       3613750 548 -  4147112  
i caePb3.Scfld02_0      C 0 C 0

a score=546.000000
s ce10.chrX              2982362 1 + 17718866 T
s cb4.chrX              17719301 1 - 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    445722 1 +   484378 t
i caeSp111.Scaffold582  C 0 I 33
s caePb3.Scfld02_0       3614298 1 -  4147112 T
i caePb3.Scfld02_0      C 0 I 11
e caeRem4.Crem_Contig15   439863 6 -  1794024 I

a score=168.000000
s ce10.chrX              2982363 14 + 17718866 GGCGggagtaacgg
s cb4.chrX              17719302 14 - 21540570 ATTGGAGGAAGCAG
i cb4.chrX              C 0 I 23
e caePb3.Scfld02_0       3614299 11 -  4147112 I
e caeSp111.Scaffold582    445723 33 +   484378 I
e caeRem4.Crem_Contig15   439863  6 -  1794024 I

a score=0.000000
s ce10.chrX              2982377 1027 + 17718866  
e caePb3.Scfld02_0       3614299   11 -  4147112 I
e cb4.chrX              17719316   23 - 21540570 I
e caeSp111.Scaffold582    445723   33 +   484378 I
e caeRem4.Crem_Contig15   439863    6 -  1794024 I

a score=218.000000
s ce10.chrX              2983404 15 + 17718866 ctATAAATATAATTC
s caeRem4.Crem_Contig15   439869 15 -  1794024 CTATATGGCTAATGA
i caeRem4.Crem_Contig15 I 6 C 0
e caePb3.Scfld02_0       3614299 11 -  4147112 I
e cb4.chrX              17719316 23 - 21540570 I
e caeSp111.Scaffold582    445723 33 +   484378 I

a score=-128.000000
s ce10.chrX              2983419 24 + 17718866 TCGCAACATTTTAAAACTTATATC-
s caeRem4.Crem_Contig15   439884 24 -  1794024 TCAC-aacttctaaaaatattgTAT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3614310 24 -  4147112 tcatgaaattttggaaatgacaCT-
i caePb3.Scfld02_0      I 11 C 0
e cb4.chrX              17719316 23 - 21540570 I
e caeSp111.Scaffold582    445723 33 +   484378 I

a score=280.000000
s ce10.chrX              2983443 5 + 17718866 TGGTC
s caeSp111.Scaffold582    445756 5 +   484378 TAGTT
i caeSp111.Scaffold582  I 33 C 0
s caePb3.Scfld02_0       3614334 3 -  4147112 --ATT
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17719316 23 - 21540570 I
e caeRem4.Crem_Contig15   439908 0 -  1794024 C

a score=185712.000000
s ce10.chrX              2983448 334 + 17718866 TCAGGGCTTATCAAAGATTCAACAACTGCCTCGGAGGGAGCTACATCAAACAAGCCTGCTATCCGCACGAACCGCTAAAGTCTCGCTATTCCGTTGTCGATTCAGTCTTGGATTATGTTTGTGGAGAAGGATATCAATGTATG----ACTTAGGAAAATTATCCTGTAAAGCGTAGAATTTGGAAAATTTTCAGCAATGCTCAACAACTGGAATTGCTACTTGTCTGTTGCGGAAAGCAGGGAGATTGCAATGTGTGAAGCAAGTTTCACACAATTGGCAAGAAACACTGAACAAATGTACAATGATTATTCGTCAGGAGCCGGAGCATGCTTGTGAG
s cb4.chrX              17719339 327 - 21540570 TCAGAGCCTACCAAAGATTCAACAACTGTCTAGGTGGAAGTTACATCAAACAAGCTTGCTATCCCCACGAACCTTTAAAATCTCGCTACTCTGTGGTGGACTCAGTGCTAGAATATGTTTGTGGAGAGGGATATCAATGTGAGC---ATAATTGAGAATTTAGTA--------GAcggaaaattagatttttagcTATGCTGAACAACTGGAACTGCTACTTGTCTGTTGCGGATAGCAGAGAGATTGCAATGTGTGAAGCAAGTTTCACACAATTGGCTAGGAACACCGAGCAAATGTACAATGACTATTCTTCAGGAGCAGGAGCGTGTTTGTAAG
i cb4.chrX              I 23 I 725
s caeRem4.Crem_Contig15   439908 329 -  1794024 TCAGAGCGTATCAAAGGTACAATAGTTGTCTTGGCGGAAGTTATATCAAGCAGGCCTGTTACCCTCACGAACCTTTGAAATCTCGTTTTTCGGTGGTAGATTCTGTTCTCGAGTATGTATGTGGAGAAGGGTACCAATGTGAGTGCAAAAACTgggaaatgtttt--------caaaatgaactaG-TTTCCAGCTATGCTGAACAATTGGAACTGTTATTTATCGGTGGCTGATAGCAGAGAAATCGCATTGTGTGAAGCAAGTTTCACTCAATTGGCAAAGAATACCGAACAAATGTACAATGACTACTCATCTGGAGCAGGAGCATGCTTGTGAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    445761 325 +   484378 TCAGAGCCTACCAGAGATTCAACAACTGCCTTGGTGGAAGTTACATCAAACAAGCTTGTTATCCTCATGAACCTCTAAAATCTCGTTATTCGGTAGTTGATTCAGTTTTGGAATATGTTTGTGGGGAAGGATATCAATGTAAG----GTATATTATTATTGACT---------GAAGAAAACTAAGAGTTTCAGCTATGCTCAATAACTGGAATTGTTATTTATCAGTTGCTGACAGTAGAGAGATTGCAATGTGTGAAGCTAGTTTTACTCAATTGGCAAGGAACACTGAGCAGATGTACAATGATTATTCCTCGGGAGCTGGTGCATGTTTGTGAG
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3614337 326 -  4147112 TTAGAGCCTACCAACGGTTTAATAACTGTCTTGGCGGCAGTTACATCAAACAGGCTTGTTATCCTCATGAACCATTGAAATCCAGGTTTTCCGTTGTTGATTCAGTACTGGAATATGTTTGTGGAGAAGGATACCAATGTAAGA---ATAGAACGAAATTCTTT---------AATCATAGGTGAATGTTACAGCAATGCTCAATAACTGGAATTGTTATTTGTCTGTTGCTGATAGCAGGGAGATCGCTATGTGTGAAGCAAGTTTTACTCAGTTAGCGAGGAACACCGAACAAATGTATAACGACTATTCATCAGGAGCGGGAGCATgcttgtgag
i caePb3.Scfld02_0      C 0 C 0

a score=-7589.000000
s ce10.chrX              2983782 36 + 17718866 -----------CTTTCATATTATAGA--TTTAAT----------------------TGACAACTGACAAAA
s caeRem4.Crem_Contig15   440237 23 -  1794024 -----------TTCTctaacaacatt--ttttaa-------------------------aa----------
i caeRem4.Crem_Contig15 C 0 I 7
s caeSp111.Scaffold582    446086 48 +   484378 TGTTTGAAAAGCTTCTAGATACTAGT--TTTCAG-------------------TTCC--AAACAGTTGAAA
i caeSp111.Scaffold582  C 0 I 3
s caePb3.Scfld02_0       3614663 70 -  4147112 t-tttgaaatatattcgGATGGAAGTGATTTCAGGGGTCGATAAGaatgaattttctgagaatcgATGAAA
i caePb3.Scfld02_0      C 0 I 12
e cb4.chrX              17719666 725 - 21540570 I

a score=103063.000000
s ce10.chrX              2983818 224 + 17718866 --------------------------------ATGGC--TTTCAGTGCACTTCAATCATATACCGACTGCATTCGTCCTGCAATTGAAACAACCTGTGGACTTGGCTCTTTTCTGACAGTTATCCAAGCAGTTGAACGGCCAATTCAAATTTACCTTCCATTCTGTACACTTTCTTCGTCCGCGATCTCATTTGTTCAATCAATCATAATTTCTCTTGCTGTTTTCTTGTTTTGCCTATAATTTATTGTTTTGAAATT
s cb4.chrX              17720391 213 - 21540570 --------------------------------ataat--ttaCAGTGCCCTCCAATCCTACACGGATTGCATCCGTCCTGCTATTGAGACAACATGTGGCCTTGGATCCTTCCTCACCGTTATCCAAGCCGTCGAACGACCCATTCAAATCTATCTCCCATTTTGTACGCTTTCCTCTTCCACGATCTCGTTCCTTccctcaattttcatttccctctttcttttcgtttattatttgtaaa-----------aaatt
i cb4.chrX              I 725 C 0
s caeRem4.Crem_Contig15   440267 217 -  1794024 --------------------------------GTTAT--TTTCAGCGCACTTCAATCGTACACCGACTGCATCCGCCCTGCAATTGAAACTACATGTGGACTTGGTTCATTCCTTACTGTGATTCAAGCAGTCGAGCGACCCATTCAAATTTATCTTCCATTTTGTACACTATCCTCGTCGATGATCTCTTTTGTTCCTTCGCTCATTATGTCATTCGTATTTTTCATTCtatatttctaaa-------tttcaaatt
i caeRem4.Crem_Contig15 I 7 C 0
s caeSp111.Scaffold582    446137 242 +   484378 GTTGCTTTTCATTAATTTATTCTAGTTccaaaacaattatttcagTGCTCTCCAATCATACACCGACTGCATCCGTCCAGCAATTGAAACAACTTGTGGACTGGGGTCATTCTTAACAGTTATTCAAGCAGTGGAACGACCGATTCAAATTTACCTCCCATTCTGTACTCTTTCCTCTTCAGTGATATCTCTAATTCCTTCTTTTGTTAtgtctcttgt-tttttaatgttttattttt---------------aatt
i caeSp111.Scaffold582  I 3 C 0
s caePb3.Scfld02_0       3614745 242 -  4147112 AAGACTCATCTTTGTCCTATTCCA---TCCAAACAATC-TTTTAGTGCTCTCCAATCCTACACCGACTGCATTCGTCCTGCAATTGAAACTACATGTGGACTTGGCTCATTCTTGACGGTTATCCAAGCAGTTGAACGACCTATCCAAATATATCTCCCATTCTGTACACTTTCGTCTTCAATGATCTCCTTCATtccctcattcattttttcttttgtctttttcatgTATTACTTATAA------------AAATT
i caePb3.Scfld02_0      I 12 I 35

a score=-5461.000000
s ce10.chrX              2984042 36 + 17718866 GAAAGACTCGAACCC---CATAACTTAA-TATTGTC-ATTG
s cb4.chrX              17720604 29 - 21540570 -------tcccTTCCCACTCGAATTCAATTATATTC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440484 26 -  1794024 -----------atctcCGTTTTATCCAAATGTGTTTC----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    446379 29 +   484378 gaaa---tctCATCT---TTTCATTCAG-TACGTTT-----
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3614987 35 -  4147112 I

a score=22889.000000
s ce10.chrX              2984078 272 + 17718866 AAAACCCCTCAGACCTATACATGTATAAACTATTGCATCTC--ATTCGG-------------TGTTACACTCTCTCT-----------------CTTGCTTACATAGTTACTATGGCAACGCTCCG------CTAGCTTGACGAAAATTGTTTT--CTCTTGGGTGCCATGGCAACCAGA---ACAC-CAAGCA-------------GCG------------CACTCTTCTCTATTTCTTCTGAGAACACTTTTCTTA------ATGGCGAACAGCACTTTTCGTGAA---GATGATGACGATTTTTACGGCGGTTTTGATTCGTATGATAAAGCATATGATATTCAGGT
s cb4.chrX              17720633 278 - 21540570 -AACTCCCTCAGCTGCATATATGTATAAACAATTGTATCTC--TCTTTGGGAAAAGCGTTTCCTTCTTTATTTCTTTGCGTCCTTTCTCTCGGCGCGTCTTTC--GGTTGCCAGGGAAACGCAACGCTTGTTTTCCCTG-----GGGGTGCTTT---GACTAAGCGCACATATAGCGA-----ACGC-TTTTAA----------------------------TATTA------------GCATACATCACT-------------ATGCACCAAAACTCGTTTCGTGAAAACGACGACGATGATTTCTACGGTGGATTTGATTCCTACAATCAAGCGTATGATATCgaggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440510 289 -  1794024 AAAACCCCTCAGCTTTATACATGTATAAACTATTGAATCTC--TCCTCG-------------CTTCTTGTTATGTCTACATCCTCTCTAT----ATTGCTCTC---ATCACTATGGAAACGCGGAGTAGGGGCACATTGAGCGTGGGGTGTTTT--CCGTTGGGAGTCTAGGCAACGAGA-ATACGCATTCTCA----------------------------CATTG-----CATTTGCTCCTTCACCACTTCATTCAATAGAAATGCATCAAAACTCGTTCAGAGAA---GACGATGATGATTTTTATGGTGGTTTTGATTCGTACGATAAAGCTTATGATATTCAGGT
i caeRem4.Crem_Contig15 C 0 I 21
s caeSp111.Scaffold582    446408 271 +   484378 CGCAACCCTCATTTCCATACATGTATAAATGATTGAATCTC--ACGCAG-------------TGTCTTGTTTTCTCT----CGGCTCTCCTCGCACTG--------GTTACCATAGAGA-------------CGCGCTC-----ACAACGCGTTTACTAGCGAGCACCTAGGCAACGGGACGCGCAC--ATTCA----------TCCGAG------------CGCTT-----TACTTTCATCTCTAATATATTCTTTCAAAC--ATGCAACAAAACTCCT---ATagagatgatgatgacgattTTTACGGTGGATTCGACTCTTATGATCAAGCTTATGATATTCAggt
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3615022 267 -  4147112 CAAACCCCTCGATGTCATACATGTATAAATTATTGAATCTCTTTCTCGT-------------TGTTTTGCTTACTCT------GCTCTCC------------------------------------------CTCTTTT-----CTAACGCGTT--CTTGTG-TTACCAAGGAGACGGGGCACACAC-TACTCAATACTTCTTTTGCGAGGAAAGAGACTCACACTC-----TCATTTCAACGACAAAACTTTATCT--------TTCACttaaatttttcggaaatgaatgatgatgatgatttttatGGTGGATTCAATTCTTACGATAAAGCTTACGATATTCAGGT
i caePb3.Scfld02_0      I 35 I 44

a score=1112.000000
s ce10.chrX              2984350 22 + 17718866 TTGATAATAAT------TTAAAAATGAA
s cb4.chrX              17720911 16 - 21540570 ------atttt------ttgaaattgaa
i cb4.chrX              C 0 I 17
s caeSp111.Scaffold582    446679 22 +   484378 ------attttgaattattggaaatgaa
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3615289 44 -  4147112 I
e caeRem4.Crem_Contig15   440799 21 -  1794024 I

a score=152.000000
s ce10.chrX              2984372 16 + 17718866 TAAGAGTCTATGATTT
s caeSp111.Scaffold582    446701 13 +   484378 taa---tcattaattt
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3615289 44 -  4147112 I
e cb4.chrX              17720927 17 - 21540570 I
e caeRem4.Crem_Contig15   440799 21 -  1794024 I

a score=0.000000
s ce10.chrX              2984388 526 + 17718866  
e caePb3.Scfld02_0       3615289  44 -  4147112 I
e cb4.chrX              17720927  17 - 21540570 I
e caeSp111.Scaffold582    446714   0 +   484378 C
e caeRem4.Crem_Contig15   440799  21 -  1794024 I

a score=419.000000
s ce10.chrX              2984914 8 + 17718866 ACGCAATA
s caeRem4.Crem_Contig15   440820 8 -  1794024 ACgcgaaa
i caeRem4.Crem_Contig15 I 21 C 0
e caePb3.Scfld02_0       3615289 44 -  4147112 I
e cb4.chrX              17720927 17 - 21540570 I
e caeSp111.Scaffold582    446714 0 +   484378 C

a score=-68.000000
s ce10.chrX              2984922 14 + 17718866 ATAAATGTG---TTTAA
s cb4.chrX              17720944 17 - 21540570 ATAAGTGTATATTTTGC
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig15   440828 12 -  1794024 -aaattgta---tttg-
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3615289 44 -  4147112 I
e caeSp111.Scaffold582    446714  0 +   484378 C

a score=933.000000
s ce10.chrX              2984936 3 + 17718866 TTC
s cb4.chrX              17720961 3 - 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440840 3 -  1794024 ttC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    446714 3 +   484378 tcc
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3615289 44 -  4147112 I

a score=44622.000000
s ce10.chrX              2984939 67 + 17718866 AGAACATAACTCAAAATCCACAATTTCAACAAGCCGTTGCTAGGTCGAGCCATGGAAGGCGTCCGGT
s cb4.chrX              17720964 67 - 21540570 AGAGTATCACACAAAACCCTCAATTCCAACAAGCTGTTGCTCGATCGAGTCATGGAAGGCGCCCGgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440843 67 -  1794024 AGAATATAACTCAAAATCCGCAATTTCAACAAGCAGTTGCTCGTTCTAGCCATGGACGTCGTCCGGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    446717 67 +   484378 agaacATAACTCAAAATGCTCAGTTTCAACAAGCAGTTGCACGATCAAGTCATGGAAGACGTCCGGT
i caeSp111.Scaffold582  C 0 I 53
s caePb3.Scfld02_0       3615333 67 -  4147112 agaatataaCTTCAAATCCTCAATTCCAACAAGCAGTTGCACGTTCTAGTCATGGAAGACGGCCGGT
i caePb3.Scfld02_0      I 44 C 0

a score=588.000000
s ce10.chrX              2985006 4 + 17718866 GAGT
s cb4.chrX              17721031 4 - 21540570 aatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440910 4 -  1794024 AAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3615400 4 -  4147112 ATGT
i caePb3.Scfld02_0      C 0 I 53
e caeSp111.Scaffold582    446784 53 +   484378 I

a score=191.000000
s ce10.chrX              2985010 2 + 17718866 GA
s caeRem4.Crem_Contig15   440914 2 -  1794024 GA
i caeRem4.Crem_Contig15 C 0 I 40
e caePb3.Scfld02_0       3615404 53 -  4147112 I
e cb4.chrX              17721035 0 - 21540570 C
e caeSp111.Scaffold582    446784 53 +   484378 I

a score=-632.000000
s ce10.chrX              2985012 316 + 17718866 CAATTGGAAAATAAACTGTTTTGTATAGTAATTAGAAATTTTTTACCTTAAAGAG-----AAAAATTTTTAAAACTTCAATCAAAGGAGAAATTGAGTTTGTGTGTTAT------TTTGCTTAAAAAATACTAAAACTGACTAAATTTTATGATTAAACTTTTTTT---TCTAAAAAATTTTTCCGATTGGTAAATTTTACCTTGCTGCTCCGGTCCGAAACAGTTTTAAAAAAATCATCAGCaaaaaaaaaaaaaaaaaaaaTTTCGGGCAAAGTTGACCTTTTTTTGACTTTTAAAATCTTTGAAATTTTTTTGAAAATTTTTATTAC
s cb4.chrX              17721035 245 - 21540570 ---------------ttattttgttt--ttgtgggattttttctcaattataGGGTTGGAAAACGTTGTT-----TTCAATTGACAG-----------TTATGCACTGTCAAGGGtttttttCAA---------------CTGgtatttaaaattgaattttttttgagtcagAAAAATTG--CTGATTCAAATGTTTCACATTAAAATTT--GTCCTA--------TGATATCACTCTTATCTCAAAagacgaaaaaataaaatt-----gaagt--------------cttata----ttttcaaatttttttcaaaattttgaat--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3615404  53 -  4147112 I
e caeSp111.Scaffold582    446784  53 +   484378 I
e caeRem4.Crem_Contig15   440916  40 -  1794024 I

a score=36.000000
s ce10.chrX              2985328 3 + 17718866 AAT
s cb4.chrX              17721280 2 - 21540570 -tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   440956 3 -  1794024 AGT
i caeRem4.Crem_Contig15 I 40 C 0
e caePb3.Scfld02_0       3615404 53 -  4147112 I
e caeSp111.Scaffold582    446784 53 +   484378 I

a score=1013.000000
s ce10.chrX              2985331 19 + 17718866 TTATTACAATCTTTTTCTA
s cb4.chrX              17721282 15 - 21540570 tcatacc----ttttttca
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig15   440959 19 -  1794024 TTgtaacaaattttttttt
i caeRem4.Crem_Contig15 C 0 I 5
s caePb3.Scfld02_0       3615457 19 -  4147112 TTTTAAAAATCTAGTTTCT
i caePb3.Scfld02_0      I 53 C 0
e caeSp111.Scaffold582    446784 53 +   484378 I

a score=144905.000000
s ce10.chrX              2985350 329 + 17718866 AGACTGCATCTCAAATGGGATTCCGAGATGCTTCCTCCTCTTATGGAAAACCGCCGGGAACGATGATGGGAAGTGAGTAACCAACTA-CATTTTTTTTTTG--------CAATCAGGATCCGTTCTTTTCAGATCAAAGTCGAATGGGCGGTCGAACAGCCATGGCTAACAACAATGAACCTGCGAGACCGATGACCGCTGTCCGCGGAGCCGGATATACATCCTTTGCAAATAAAGGTGA------------CATCCGCACCGTCCTAA----------ACTATTTGTTCACAGTCA----------CTTTTTTTCAGTTCAAGCCGCAGAAAGACCACTAAGTACCGAGAACTCGGGTGAAAAGTAAG
s cb4.chrX              17721302 315 - 21540570 agaacacaTCACAAATGGGATTCCGAGATCCAGGCTCTTCTTACGGCAAACCTCCACCCACAATGAT---CAGTAA--GATTTTATACACCTACTATTTCG--------CAACCA-------GTTAGTTTAGACATGAGCCGCATGGGCGGCCGAACGGCGATGGCCAACAACAACGAGCCGGCTCGACCGATGACCGCTGTCCGTGGAGCCGGATACACATCGTTTGCAAACAAAGGTAAGACACTGACAGATATCCGCACA-------------Caagacgattt----------------------ttttttgcagttcaagCTGCGGAAAGAACTATTAGCACTGAGAACTTGGGGGAGAGGTAGG
i cb4.chrX              I 5 I 29
s caeRem4.Crem_Contig15   440983 348 -  1794024 agaccGCTTCTCAAATGGGGTTCCGAGATAACTCTTCTTCTTATGGAAAACCTCCACCCACCATGAT---TAGTAA-TGAATTGATA-AATTAAGATTTTAAATCaatccaaaca-------ttt--ttcagaccaaagTCGAATGGGCGGTCGAACAGCAATGGCCAACAACAACGAACCGGCTCGTCCGATGACCGCTGTCCGTGGAGCCGGATACACATCGTTCGCAAATAAAGGTGA------GGCAGATATCCACACCTCGCAAA-TTCGTCAAGTTCGTTTGCTCACATTAACACGcacct-ctttttttcagttcaagcTACGGAGACATCTCTAAATTCTGAGAATTTGGGGGAGAAGTAAG
i caeRem4.Crem_Contig15 I 5 I 8
s caeSp111.Scaffold582    446837 345 +   484378 AGACTGCTTCCCAAATGGGATTCCGAGACGGTACTTCATCATACGGAAAACCACCACCTACCATGCT---CAGTGAGTAATCAGATA---CTGTTTTTTCACACCTCCGCAAAAC-------CTCTTCTCAGATCAAAGTCGAATGGGAGGCCGAACAGCCATGGCCAACAACAACGAGCCAGCTCGGCCGATGACCGCTGTCCGTGGAGCCGGATACACATCTTTCGCAAATAGAGGTAA------GACAGATATCCCTACTTCTCGAG-TTCGCGAA----GTTTGCTCCCAAAGAAAcgctctg-ttttttttcagttcaagcGGCGGAAAGTCCTTCGAGTACGGAAAACTCGGGTGACAGGTGGG
i caeSp111.Scaffold582  I 53 C 0
s caePb3.Scfld02_0       3615476 348 -  4147112 AGACTGCTTCTCAAATGGGATACCGTGACGGAGCATCTTCATATGGGAAACCTCCACCAACCATGAT---AAGTAAGTAATTCAATA---CTGTTTTCTTACACCTCCGCAAA----------CCATTTCAGACCAAAGTCGAATGGGCGGTCGAACAGCAATGGCCAACAACAACGAGCCCGCGCGCCCGATGACCGCTGTGCGTGGAGCCGGATACACATCTTTCGCAAATAAAGGTAA------GACAGATATCCACACCTATCGAGCCTTGCTAGGTTCGTTTGCTCACCATAACACgcacagattttttttcagttcaagcTGCGGAAAGATCTCTCAGTTCGGAAAACTTGGGGGAAGAGTGAG
i caePb3.Scfld02_0      C 0 C 0

a score=-2806.000000
s ce10.chrX              2985679 33 + 17718866 -AATATATAGTTGCGAAATTTAGTTGAAAAATCA-
s caeRem4.Crem_Contig15   441339 30 -  1794024 -GA----TCAATGGGAAAGAATTTGAGCAAAACAT
i caeRem4.Crem_Contig15 I 8 C 0
s caeSp111.Scaffold582    447182 23 +   484378 TAA-----------AATAATTgctgagaaaaaca-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3615824 33 -  4147112 TGATAC-TCTTTGGGATagatgttgaaaaaagat-
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17721617 29 - 21540570 I

a score=164062.000000
s ce10.chrX              2985712 331 + 17718866 ---------TGTAACT-TGTAGTGGTGAAGAAAAATGTCGGCAGATGGAAAACAAAGTAATGGAAATGCTCCGAGAAAGTATGCTGGCTAGTGAGAAGAAAAAGTTCAAAGAA-----------------------------------------------------------GCGCTGGATAAAGCGAAGGAAGCTGGGCGACGTGAAAGAGCAGTTGTGAAGCACAGGGAGCAACAGGGATTGGTAGAGATGATGAATTTGGATCTAACTTTCACCGTGTTGTTCAACTTGGCTCAGCAATATGAAGCGAATGATATGACTAATGAAGCGCTAAACACTTATGAAATCATTGTAAGGAACAAAATGTTCCCAAATTCTGGGAGACTAAAGGT-------AAATATA-
s cb4.chrX              17721646 376 - 21540570 ---------GGTGATG-TTCAGTGAAGAGGAAAAATGTAAGCAGATGGAGAATAAGGTGATGGATATGTTGCGTGAGAGTATGATTGccagtgagaagaagaagtataAAGAGGTGAGAAT--------GCATACAAATTAAAGGTTTAT---TTCGAATGGAGGGGTTCAGGCGCTAGACAAGGGAAAAGAGGCAGGAAGACGGGAGAGAGCAGTTGTGAAGCACCGTGAGCAATCTGGACTAGTGGAGAGCATGAATTTGGATTTAACGTTTACGGTTCTCTTCAATTTGGCTCAACAATATGAGGCTAATGACATGACCAACGAGGCACTGAACACCTATGAAATCATTGTGAGAAACAAAATGTTCCCGAACTCTGGAAGATTAAGAGT-------GAGC----
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig15   441369 374 -  1794024 -----------TGCTATTTTAGTGGCGAGGAGAGGTGTAAGCAGATGGAAAACAAGGTAATGGATATGTTACGTGAGAGTATGATGGcatttgagaagaagaagtataAGGAGGTGAGAATATTGAAAAGCAGGGAGGTTCAAAGTTGA---------------GAATTCAGGCATTGGACAAGGGGAAAGAAGCCGGAAGACGAGAAAGAGCTGTTGTAAAGCATCGAGAACAACAGGGCCTGGTAGAAAGTATGAATTTGGATCTGACTTTCACAGTCCTCTTCAATTTGGCTCAACAGTACGAGGCTAATGATATGACGAACGAAGCCCTGAACACATATGAGATTATAGTCCGTAATAAGATGTTTCCTAATTCGGGAAGATTGAGAGT-------GAGT-TTA
i caeRem4.Crem_Contig15 C 0 I 28
s caeSp111.Scaffold582    447205 384 +   484378 attaggGTTTATTGCG-TTTagtggagaagagaaatgcaAGCAAATGGAAGCAAAAGTGATGGATATGCTCAAAGAGAGTATGTTGGcaagtgagaagaagaaattcaaagaagtAAGAAGACT-----------CCATTGAAACTCTTTGGATCAAAATTTG---GTTTAGGCACTAGACAAGGGTAAAGAGGCTGGAAGACGTGAACGTGCTGTTGTTAAATACAGGGAGCAGCAAGGCCTAACTGACAATATGAATCTTGATTTGACATTCACAGTTCTCTTTAATTTGGCCCAACAATACGAAGTGAATGATATGACCAACGAAGCATTAAATACTTATGAGATCATTGTGCGtaacaaaatgtttccgAACTCCGGAAGACTCAGAGT-------AAGT-TA-
i caeSp111.Scaffold582  C 0 I 1
s caePb3.Scfld02_0       3615857 386 -  4147112 a------tatatt----ttcagtggtgaagaaaaatgtaagCAAATGGAGAATAAGGTGATGGATATGCTGAGAGAAAGTATGATTGcgagtgagaagaaaaagtataaGGAAGTACGTAAACTG----------AGGTTGGAAAGTAACAGAACTAATTGTGAATGTTCAGGCACTCGATAAAGGCAAAGAAGCCGGAAGACGTGAACGTGCTGTTGTCAAACATAGAGAACAGCAAGGACTGGTAGATAGCATGAATTTGGATTTGACGTTTACTGTGCTTTTCAACTTGGCTCAACAATATGAAGCCAATGATATGACTACTGAAGCATTGAACACTTACGAAATCATCGttcgaaacaaaatgtttccgAACTCTGGAAGATTGAGGGTTTTTAGAAATA-TA-
i caePb3.Scfld02_0      C 0 I 3

a score=0.000000
s ce10.chrX              2986043 1 + 17718866 A
e caePb3.Scfld02_0       3616243 3 -  4147112 I
e cb4.chrX              17722022 0 - 21540570 C
e caeSp111.Scaffold582    447589 1 +   484378 I
e caeRem4.Crem_Contig15   441743 28 -  1794024 I

a score=-214.000000
s ce10.chrX              2986044 3 + 17718866 AAG
s cb4.chrX              17722022 2 - 21540570 AA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    447590 3 +   484378 AAG
i caeSp111.Scaffold582  I 1 I 887
e caePb3.Scfld02_0       3616243 3 -  4147112 I
e caeRem4.Crem_Contig15   441743 28 -  1794024 I

a score=-1002.000000
s ce10.chrX              2986047 102 + 17718866 TTTTTCTTAAGGATATGTATGTCCTAACAAAATTTTGGGCTGCAAAGTTCCACCCATCCAAATTGTGATATGAAATTGTTTCAGTGCATTTTTAATACTTTC
s cb4.chrX              17722024  39 - 21540570 TGTTTTCTAGTAATAT--------------------------------------CATACAAATTG-------------------------ATCAATATACTC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3616243   3 -  4147112 I
e caeSp111.Scaffold582    447593 887 +   484378 I
e caeRem4.Crem_Contig15   441743  28 -  1794024 I

a score=0.000000
s ce10.chrX              2986149 229 + 17718866 AAGTTCTTTAGAATTGCTCCAAATGCTTTTTCTGCATACTTTTAATAATTTTCAAATTGGTTAGATGTTGGTAAAGATTCTGAAATGTTTTGGAAATTTCCAGTTTTTTTAAAGAGTCAAAATTTCTTAAAATCTCCTAGTATATAAAAACAGCGTTTGGAGCAATTCTACAAAGCTTGAAAATATTAGAAATTGTGCTGAAGCAATTTCAGATCAACATTTGAAGGGT
e caePb3.Scfld02_0       3616243   3 -  4147112 I
e cb4.chrX              17722063   0 - 21540570 C
e caeSp111.Scaffold582    447593 887 +   484378 I
e caeRem4.Crem_Contig15   441743  28 -  1794024 I

a score=394.000000
s ce10.chrX              2986378 28 + 17718866 TGAGCATTAACAGTAAAGTAAAATTTTT
s caePb3.Scfld02_0       3616246 18 -  4147112 TGAACAtccaca----------actttt
i caePb3.Scfld02_0      I 3 C 0
e cb4.chrX              17722063  0 - 21540570 C
e caeSp111.Scaffold582    447593 887 +   484378 I
e caeRem4.Crem_Contig15   441743 28 -  1794024 I

a score=-2431.000000
s ce10.chrX              2986406 32 + 17718866 TCATTATTTTGACTAAGC---TTA-ATATATATTTT
s caeSp111.Scaffold582    448480 36 +   484378 TCACAATTCTGATTTAAAGtttcaaatccaaaaatc
i caeSp111.Scaffold582  I 887 C 0
s caePb3.Scfld02_0       3616264  4 -  4147112 ---------------------tca-----------t
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17722063  0 - 21540570 C
e caeRem4.Crem_Contig15   441743 28 -  1794024 I

a score=613.000000
s ce10.chrX              2986438 2 + 17718866 TT
s caeRem4.Crem_Contig15   441771 2 -  1794024 TT
i caeRem4.Crem_Contig15 I 28 C 0
s caeSp111.Scaffold582    448516 2 +   484378 tc
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3616268 2 -  4147112 tc
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17722063 0 - 21540570 C

a score=111674.000000
s ce10.chrX              2986440 258 + 17718866 CAGGTTAATATTGGAAATATTCATTTCCGCAAACGTGAATTCACAAAAGCTTTGAAATACTACAGGATGGCTTTAGATCAAGTTCCGAGTATTCAAAAAGATACAAGAATTAAAATTCTCAACAATATTGGTGTAACTTTTGTCAGAATGGGAAGTTATGACGATGCCATAAGCACTTTTGATCATTGTGTGGAAGAAAATCCGAATTTTATTACAGCCCTCAACTTGAGTAGGTTATCACTAGAAATTTGATTTTTT------------
s cb4.chrX              17722063 245 - 21540570 CAGGTCAACATTGGAAACATCCATTATAAACGTCGAGAGTTTACCAAAGCGTTGAAGTACTATCGGATGGCTTTGGATCAAGTGCCGAGCATTCAGAAGGATACaagaataaaaattctgaataatatCGGAGTCACTTTTGTGAGAATGGGATCCTATGATGATGCGGTGAACACTTTTGAGCATGTTGTCGAGGAGCAACCAAATTTTGCGAGTGCATTGAACTTAAGTTA-------------GTTTGATGTTTT------------
i cb4.chrX              C 0 I 162
s caeRem4.Crem_Contig15   441773 245 -  1794024 TAGGTAAACATTGGTAACATCTATTTCAAACGGCGAGAGTTCACTAAAGCTTTGAAGTACTATCGCATGGCTTTGGATCAGGTACCAAGTATTCAAAAAGACAGCAGAATCAAAATACTGAACAATATCGGCGTGACATTTGTGAGAATGGGCAGTTATGATGATGCAATAAGCACTTTTGAACATTGTGTTGAAGAACAGCCTAATTTCTCAACTGCATTGAATTTGAgtgc-------------gtttttttcttc------------
i caeRem4.Crem_Contig15 C 0 I 17
s caeSp111.Scaffold582    448518 259 +   484378 cAGGTTAACATTGGAAACATATACTTTAAAAGGCGAGAGTTCATGAAAGCGTTGAAATATTATCGAATGGCACAGGATCAAGTTCCGGCTATTCAAAAGGCAGCAAAAAGTAAAATAGCAAACAATGTTGCTATAGCTTTTGTGAAAATTGGAAGTTATGATACAGCTATCGACACTTTGGAGAATAGTGTTGAGGATTACCCAGAGTTTACAACTGCACTGAACTTGGGTAGACAAT-------AGTTTACCAATCTC--ATTAc--ga
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3616270 257 -  4147112 cagGTGAATATTGGAAACATCTACTTCAAAAAACGAGAGTTCACAAAAGCTTTGAAATATTACCGTATGGCGTTAGACCAGGTTCCAAGTATTCAGAAAGATACCAGgataaaaattctcaataacATTGGAGTAACATTTGTAAGAATGGGAAGCTATGATGACGCTGTCAGCACTTTTGAACATTGTGTCGAAGAGCACCCAGACTTTTCTACTGCATTAAATTTGAGTAT-------------GTTTAATAATCCTCGACTGCTTGA
i caePb3.Scfld02_0      C 0 C 0

a score=-1637.000000
s ce10.chrX              2986698 9 + 17718866 -TTAATGTTA
s caeRem4.Crem_Contig15   442035 9 -  1794024 ATACTtgtg-
i caeRem4.Crem_Contig15 I 17 C 0
s caeSp111.Scaffold582    448777 9 +   484378 tttccagtt-
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3616527 9 -  4147112 GTAaccatt-
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17722308 162 - 21540570 I

a score=98231.000000
s ce10.chrX              2986707 177 + 17718866 TTTTACAGTATTGGTAGCATTTTGCATACAAGACGCAGAAAAAATGAGAGAAGCATTTGTGAAAATGATTGATATTCCTGGGTTTCCGGATGATGACTACATGAAAGAGAAAGATGATGATGATGTTTTGTTGAATCAGACCTTGAACTCGGATATGCTGAAAAACTGGGAGAAACG
s cb4.chrX              17722470 177 - 21540570 TTTTGCAGTTTTGACTTCGTTCTGCATACAAGACGCCGAAAAAATGAGggaatcatttttaaaactcatCGACATTCCTGGCTTCCCTGATGATGAGTTCatgaaagagaaagaagacgaTGATGTGCTCTTGAATCAAACTCTCAACTCGGATGCATTAAGACACTgggaaaaaca
i cb4.chrX              I 162 C 0
s caeRem4.Crem_Contig15   442044 177 -  1794024 tttttcagttcttgTTGCATTCTGCACACAAGACgcggagaaaatgagagaatctTTTGTGAAACTTGTCGACATTCCTGGCTTTCCTGatgatgagtttttgaaagaaaaggacGACGACGACGTTCTTCTAAACCAAACTTTAAATTCGGATATGTTGAGAAATTGGGAGAAACG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    448786 175 +   484378 tttttcagtattggTTGCATTTTGTATGCAGGAtgcagagaaaatgagagaatcattt-tgaaattaattgaCATTCCTGGTTATCCGGAAGatgag-ttttgaaagaaagagaagatgacGATGTTCTTCTCAATCAAACATTGAACTCGGATATGCTGAGAGGCTatgagaaaaa
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3616536 167 -  4147112 attttcagttttggtttCATTTTGCATTCAAGacgctgaaaaaatgagagaatctTTTGTGAAACTTATTGATATTCCGGGTTTTCCGGatgatgagtttttgaaagaaaaagatgatgacGATGTTCTATTGAACCAAACTTTGAGTTCTGATATGTTGAGAAACT----------
i caePb3.Scfld02_0      C 0 C 0

a score=20226.000000
s ce10.chrX              2986884 70 + 17718866 GAACAAGTCGGATGCTGAAAAAGCAATCATTACTGCAGTGAAGATTATTAGCCCGGTTATTGCTCCTGAG
s cb4.chrX              17722647 70 - 21540570 acaaaagaaCGAAGCGGAGAAAGCAATCATCACAGCTGTGAAAATAATTAGCCCGCTAATTGCGCCGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   442221 70 -  1794024 AATGAGAACTGAAGCTGAGAAGGCAATTATCACATCGGTGAAAATTATCAGTCCGGTGATTGCTCCTGAG
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    448961 70 +   484378 gcaaaaagcaGATGCCGAGAAAGCAATAATTACTGCTGTCAAAATTATCAGCCCAGTAATTGCATCAGAG
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3616703  0 -  4147112 C

a score=913.000000
s ce10.chrX              2986954 5 + 17718866 TGAGT
s caeRem4.Crem_Contig15   442291 5 -  1794024 TGAGT
i caeRem4.Crem_Contig15 C 0 I 31
s caeSp111.Scaffold582    449031 5 +   484378 TAGGT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3616703 0 -  4147112 C
e cb4.chrX              17722717 0 - 21540570 C

a score=373.000000
s ce10.chrX              2986959 4 + 17718866 TTTG
s caeSp111.Scaffold582    449036 4 +   484378 TTTG
i caeSp111.Scaffold582  C 0 I 26
e caePb3.Scfld02_0       3616703 0 -  4147112 C
e cb4.chrX              17722717 0 - 21540570 C
e caeRem4.Crem_Contig15   442296 31 -  1794024 I

a score=0.000000
s ce10.chrX              2986963 27 + 17718866 AATGTCAGGAAAATACAGAGTAAGATG
e caePb3.Scfld02_0       3616703  0 -  4147112 C
e cb4.chrX              17722717  0 - 21540570 C
e caeSp111.Scaffold582    449040 26 +   484378 I
e caeRem4.Crem_Contig15   442296 31 -  1794024 I

a score=-4593.000000
s ce10.chrX              2986990 330 + 17718866 ACAAAAAACAATTGaaaatttttttgtcggttgttaaaaattttcaactgaatttgtgtcgaaaattctagtttttttttaaacaaaaaaaaccaagtgaaaatatttttaca-cttacaaaaaattcaggatagaaatcatacttttttttgataatttcgagatcgaatattcaaacccaaattttttgtatgtgcaaaaatagtttgcacttggttaggcacaatatttttgGCAACCGACAGAAAATGGTTTGAACGAATTTCTTTCAAAATCTTTTTGTATTATTAGTTGGTATTATGTTGTCCTTCCGGTTGCGTAATTCCGTTA
s caePb3.Scfld02_0       3616703 118 -  4147112 ACGAGAAGCacatgaaaa-----------------------------ctgaatttg------------------------------agaAAGCCA----------TCATCACAGCTGTCAAGATAATCAGTCCAGTAATC---------------------------------------------------------------------GCGCCTGAGTAAG--------------------acttaaaattattttaaag------------------------cTACAAGTTTGT-------------------------------TCA
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17722717   0 - 21540570 C
e caeSp111.Scaffold582    449040  26 +   484378 I
e caeRem4.Crem_Contig15   442296  31 -  1794024 I

a score=-3250.000000
s ce10.chrX              2987320 46 + 17718866 TATAAA---AGTTTTTGATATACATAAGTAAAAAGATAAATAAATAGAA----------------
s cb4.chrX              17722717 36 - 21540570 TACAAACCTAGCTTT-----------------------------TAGAAATCTCCcccattatta
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3616821 19 -  4147112 TACTGA---AACTGT-----------------------------TATAACT--------------
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    449040 26 +   484378 I
e caeRem4.Crem_Contig15   442296 31 -  1794024 I

a score=-47.000000
s ce10.chrX              2987366 4 + 17718866 ATCT-
s cb4.chrX              17722753 4 - 21540570 -tttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    449066 4 +   484378 ATTT-
i caeSp111.Scaffold582  I 26 C 0
s caePb3.Scfld02_0       3616840 3 -  4147112 -TTT-
i caePb3.Scfld02_0      C 0 C 0
e caeRem4.Crem_Contig15   442296 31 -  1794024 I

a score=109160.000000
s ce10.chrX              2987370 301 + 17718866 TCCAGCTACGCTATCGGCTATGAATGGTGCCTTGAATCTCTCAAGCAGTCTGTACACGCACCATTGGCAATTGAACTTGAAATGACAAAAGCTGGTGAGCTGATGAAAAACGGAGATATTGAGGGAGCAATCGAAGTGCTGAAAGTTTTTAATTCGCAAGATTCCAAAACAGCCAGTGCGGCTGCAAACAATCTTTGTATGCTGAGATTTTTGGT---aagttgaaagtggagtatagaaattgttaaaaccagttatatggtgccaaaatgaccaaatatCAATGTGAAATTTTTTTAATTCA
s cb4.chrX              17722757 234 - 21540570 ttcagctacgcTATCGGCTATGAATGGTGTTTGGAGTCTCTGAAACAGTCGACTCATGCTGTCTTAGCAATTGATCTAGAAATGACAAAAGCCGGAGAGatgatgaaaaatggagaCATTGAAAGTGCAGTGGAGGTTCTCAAGATTTTCAATGCCCAAGACTCAAAAACAGCAGCAGCTGCAGCAAATAATCTTTGCATGTTAAGATTCTTGGT---Gaac-------------------------------------------------------------------acttttttaaattca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   442327 221 -  1794024 ttcAGCTATGCAATTGGTTACGAGTGGTGCTTGGAAACCTTGAAGCAATCGGTTCATTCTGGACTTGCTATTGAGCTGGAAATGAGTAAAGCTggtgaaatgatgaaaaatggtgACATCGAAGGAGCAATTGaagttctgaaagttttcaatgcTCAAGactcaaaaactgcaagtgcAGCTGCAAACAATCTCTGCATGTTGAGATTTTTGGT---A---------------------------------------------------------------------------TGTGA-----
i caeRem4.Crem_Contig15 I 31 C 0
s caeSp111.Scaffold582    449070 215 +   484378 CTCAGTTATGCAATAGGATATGAATGGTGCCTCGAAGCATTGAAACAATCTGTTCATGCTTCTTTAGCAATTGATCTAGAGATGACTAAAGCTggagaaatgatgaagaatGGTGACATTGACAGTGCTGTTGAAGTTCTGAAAGTGTTCAATTCTCAAGACTCAAAAACAGCCAGTGCAGCTGCAAATAACCTATGCATGTTGAGATTTTTGGT-----------------------------------------------------------------------------------------
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3616843 218 -  4147112 TTAAGCTATGCAATTGGCTACGAGTGGTGTCTGGAGTCCTTGAAACAATCAGTGCATGCTCCTCTTGCCATTGAGTTAGAAATGACGAAAGCTGgtgaattgatgaaaaatggcgACATCGATGGAGCAATTGAAGtgctcaaagttttcaattctcaagattcaaaaactgcaagTGCCGCTGCAAATAACCTCTGCATGCTCAGATTCTTGGTACT--------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0

a score=-8668.000000
s ce10.chrX              2987671 81 + 17718866 TGAAAATTCTTATTAACAGTCTTATTAACAGAAAAAGTTGCAAAAAGATTTGAGATTTCTCCAAtttttcaattttcaaaa
s caeRem4.Crem_Contig15   442548 11 -  1794024 -------------------------------------------------------------TGAGAT---AAGAA------
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    449285 27 +   484378 ---AGATCC------------------------------------------------TCTCTCAGTA---AACATTAATCG
i caeSp111.Scaffold582  C 0 I 6
s caePb3.Scfld02_0       3617061 32 -  4147112 TGGaaatcc----------------------------------------------attttctcattt---aactttcaaag
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17722991  0 - 21540570 C

a score=-436.000000
s ce10.chrX              2987752 19 + 17718866 aatcatataaaatttagat
s caeRem4.Crem_Contig15   442559 17 -  1794024 AAGCACTT--AATTTAAGT
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    449318  4 +   484378 ---------------AGAT
i caeSp111.Scaffold582  I 6 C 0
e caePb3.Scfld02_0       3617093  0 -  4147112 C
e cb4.chrX              17722991  0 - 21540570 C

a score=182.000000
s ce10.chrX              2987771 2 + 17718866 tt
s caeSp111.Scaffold582    449322 2 +   484378 TT
i caeSp111.Scaffold582  C 0 C 0
e caePb3.Scfld02_0       3617093 0 -  4147112 C
e cb4.chrX              17722991 0 - 21540570 C
e caeRem4.Crem_Contig15   442576 0 -  1794024 C

a score=0.000000
s ce10.chrX              2987773 18 + 17718866 tttttttggaattttcgc
e caePb3.Scfld02_0       3617093  0 -  4147112 C
e cb4.chrX              17722991  0 - 21540570 C
e caeSp111.Scaffold582    449324  0 +   484378 C
e caeRem4.Crem_Contig15   442576  0 -  1794024 C

a score=-2386.000000
s ce10.chrX              2987791 104 + 17718866 attttgataattggtcatagtggtgtcatagtcatgtcataatcatgttttaatgcaatttcaatttcccaccggcacttctctacctCATTTTTGCATATTTC
s cb4.chrX              17722991  12 - 21540570 atttttata--------------------------------------------------------------------------------------------tcc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3617093   0 -  4147112 C
e caeSp111.Scaffold582    449324   0 +   484378 C
e caeRem4.Crem_Contig15   442576   0 -  1794024 C

a score=278.000000
s ce10.chrX              2987895 3 + 17718866 AAC
s cb4.chrX              17723003 3 - 21540570 AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   442576 3 -  1794024 AAT
i caeRem4.Crem_Contig15 C 0 C 0
e caePb3.Scfld02_0       3617093 0 -  4147112 C
e caeSp111.Scaffold582    449324 0 +   484378 C

a score=-425.000000
s ce10.chrX              2987898 3 + 17718866 -TTG
s cb4.chrX              17723006 3 - 21540570 GTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   442579 3 -  1794024 TTT-
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3617093 3 -  4147112 ttt-
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    449324 0 +   484378 C

a score=271597.000000
s ce10.chrX              2987901 508 + 17718866  
s cb4.chrX              17723009 507 - 21540570  
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig15   442582 514 -  1794024  
i caeRem4.Crem_Contig15 C 0 I 1
s caeSp111.Scaffold582    449324 505 +   484378  
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3617096 504 -  4147112  
i caePb3.Scfld02_0      C 0 C 0

a score=427.000000
s ce10.chrX              2988409 5 + 17718866 TTGTA
s caeRem4.Crem_Contig15   443097 5 -  1794024 TTGTT
i caeRem4.Crem_Contig15 I 1 C 0
s caeSp111.Scaffold582    449829 4 +   484378 -TATa
i caeSp111.Scaffold582  C 0 I 26
s caePb3.Scfld02_0       3617600 4 -  4147112 -TCTT
i caePb3.Scfld02_0      C 0 I 1
e cb4.chrX              17723516 32 - 21540570 I

a score=301.000000
s ce10.chrX              2988414 5 + 17718866 TAATT
s caeRem4.Crem_Contig15   443102 5 -  1794024 TAATT
i caeRem4.Crem_Contig15 C 0 I 19
s caePb3.Scfld02_0       3617605 5 -  4147112 CCATG
i caePb3.Scfld02_0      I 1 C 0
e cb4.chrX              17723516 32 - 21540570 I
e caeSp111.Scaffold582    449833 26 +   484378 I

a score=333.000000
s ce10.chrX              2988419 5 + 17718866 GAATA
s caePb3.Scfld02_0       3617610 5 -  4147112 AAAta
i caePb3.Scfld02_0      C 0 I 19
e cb4.chrX              17723516 32 - 21540570 I
e caeSp111.Scaffold582    449833 26 +   484378 I
e caeRem4.Crem_Contig15   443107 19 -  1794024 I

a score=0.000000
s ce10.chrX              2988424 877 + 17718866  
e caePb3.Scfld02_0       3617615  19 -  4147112 I
e cb4.chrX              17723516  32 - 21540570 I
e caeSp111.Scaffold582    449833  26 +   484378 I
e caeRem4.Crem_Contig15   443107  19 -  1794024 I

a score=273.000000
s ce10.chrX              2989301 1 + 17718866 T
s caeRem4.Crem_Contig15   443126 1 -  1794024 t
i caeRem4.Crem_Contig15 I 19 C 0
s caePb3.Scfld02_0       3617634 1 -  4147112 t
i caePb3.Scfld02_0      I 19 C 0
e cb4.chrX              17723516 32 - 21540570 I
e caeSp111.Scaffold582    449833 26 +   484378 I

a score=196131.000000
s ce10.chrX              2989302 409 + 17718866 TTTCAGAGCTATCGATATTTTCCATCAAACCTGGAAACCGTTGAATGGCTGGCTTCTTATTATTTAGAAACTCAGTTTTCTGAGAAATCCATCAACTACTTGGAGAAGGCTGCCCTGATGCAGTAAG----TACTTAATTTCTAATGTTTCGTA-ACATTAGTCTTGCGTCATGATGAATAAAATTATGAATAATGTGCGCTTCAGGCCAAACGTTTCAAAATGGCAAATGATGATAGCCAGTTGCCTACGACGGACAGGCAATTACCAAAGAGCTTTCGAGCTTTATCGTCAGATTCATCGCAAGTTCCCTCAAGACCTCGACTGCCTCAAATTCTTGGTTCGAATTGCCGGTGATCTTGGAATGACGGAATACAAGGAGTACAAGGATAAACTGGAAAAGGCTGAAAAGTAA
s cb4.chrX              17723548 378 - 21540570 TTTCAGAGTTATCGATACTTTCCATCAAacttggatactgtagaatgGTTAGCATCGTATTATTTGGAAactcaattttcggaaaagtCCATCAGCTACTTTGAGAAAGCGGCTCTCATGCAGTGAG----TAGT--AATACTAGGAGAATGAA-------ATGgag--------------aattta---------tgaatttcagaccAAACGTATCAAAATGGCAAATGCTCATTGCCACCTGTCTACGAAGAACTGGAAACTATCAGCGCGCATTTGACCTTTATCGTcaaattcatagaaaattcCCACACGATCTGGAGTGTCTCAAATTCCTCGTCAGAATCGCTGGAGATCTTGGCATGACTGAATATAAGGAATATAAGGATAAATTGGAAAAAGCCGAAAAGTGA
i cb4.chrX              I 32 I 34
s caeRem4.Crem_Contig15   443127 376 -  1794024 tttcagagctaTCGTTATTTCCCGTCTAatcttgaaacagtggaatGGCTTGCTTCGTACTATCTGGAGACtcaattctctgaaaaatcgattaactATTTTGAAAGAGCAGCCTTAATGCAGTGAG----TA-------ACTAACGGATTGAA---TCCCTTTCTG--------------AATCT----------TTTATTTCAGACCAAACGTTTCAAAGTGGCAGATGATGATTGCAACCTGTTTGCGTAGAACTGGAAATTACCAGAGAGCATTCGAGCTCTATCGGCAAATTCATCGTAAATTTCCACAGGATCTGGATTGTCTCAAGTTTTTGGTTAGAATTGCTGGGGATTTGGGAATGGCGGAATACAAAGAATAcaaagagaaattggaaaaagcaGAGAAGTGA
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582    449859 377 +   484378 TTCCAGAGCTATCGTTATTTCCCATCAAACCTGGAAACTGTTGAATGGTTAGCATCCTATTATTTGGAAACTCAATTCTCAGAAAAGTCTATTAACTACTTCGAGAAAGCAGCTTTAATGCAGTAAGAGTCTA-------GTTTCCGTATTTCA-----Taatcttg--------------aaatt-----------tcattctagaccaaatgtttcgaaatggCAAATGATGATTGCTAGTTGTCTACGAAGAACAGGAAACTATCAACGTGCATTTGACCTTTATCGTTtgattcatcgaaaattccCACAAGATCTTGAGTGTCTGAGATTCTTAGTAAGAATTGCTGGTGATCTTGGGATGGCAGAGTACAAGGAATACAAAGATAAGTTGGAGAAGGCGGAAAAGTGA
i caeSp111.Scaffold582  I 26 C 0
s caePb3.Scfld02_0       3617635 378 -  4147112 ttttagAGCTATCGATATTTCCCATCCAACCTTGAAACAGTTGAATGGCTTGCATCCTATTATcttgaaactcaattttcggAGAAGTCCATCAATTACTTTGAGAAAGCTGCTCTGATGCAGTAAG-TTATC-------GTTTTTGATTTACACActgtgatttca--------------aaatt--------------tttcagacctaACGTCTCAAAATGGCAAATGATGATTGCAAGTTGTCTCCGCAGAACTGGAAACTACCAGCGAGCATTTGATCTGTACCGCCAAATTCATCGGAAATTCCCACAAGATCTCGAGTGTCTCAGATTCTTAGTGAGGATTGCCGGGGATCTTGGTATGgttgaattcaaagaatacAAAGATAAGCTAGAAAAGGCGGAAAAGTGA
i caePb3.Scfld02_0      C 0 I 1

a score=-2454.000000
s ce10.chrX              2989711 8 + 17718866 TATAAACA--
s caeRem4.Crem_Contig15   443503 8 -  1794024 AATGAACA--
i caeRem4.Crem_Contig15 C 0 I 23
s caeSp111.Scaffold582    450236 8 +   484378 --GTTACATA
i caeSp111.Scaffold582  C 0 I 35
s caePb3.Scfld02_0       3618014 7 -  4147112 --GCTactt-
i caePb3.Scfld02_0      I 1 C 0
e cb4.chrX              17723926 34 - 21540570 I

a score=-70.000000
s ce10.chrX              2989719 26 + 17718866 TGCAAATAGAGAAAATTTCAAAACAA
s caePb3.Scfld02_0       3618021 22 -  4147112 aaaaaatcgaaa----cctAAAACGT
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17723926 34 - 21540570 I
e caeSp111.Scaffold582    450244 35 +   484378 I
e caeRem4.Crem_Contig15   443511 23 -  1794024 I

a score=-1780.000000
s ce10.chrX              2989745 1 + 17718866 --G
s caeRem4.Crem_Contig15   443534 1 -  1794024 -G-
i caeRem4.Crem_Contig15 I 23 C 0
s caePb3.Scfld02_0       3618043 1 -  4147112 T--
i caePb3.Scfld02_0      C 0 C 0
e cb4.chrX              17723926 34 - 21540570 I
e caeSp111.Scaffold582    450244 35 +   484378 I

a score=-324.000000
s ce10.chrX              2989746 8 + 17718866 CGAGTTAT
s cb4.chrX              17723960 8 - 21540570 caaattcc
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig15   443535 8 -  1794024 TTTTTTGC
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0       3618044 8 -  4147112 CTTATCCC
i caePb3.Scfld02_0      C 0 C 0
e caeSp111.Scaffold582    450244 35 +   484378 I

a score=107386.000000
s ce10.chrX              2989754 217 + 17718866 AGAATCAATCAACTCCGTCTACAACGGGAAAGTGATTCAAGCCAAGGAAAACGTCACTCTGCAAATTCAACGCATTCCCTTCCCCCATCCGGCCTGACCGGTTTGGGATCGGGGTCAGGTGGTTCGAGTGGTGGTGGCACCCGTCAATACAGTGCACATGTTCCTCTTTTGCTGGATAGTGGCACCCCGTTCACGGTGGCCCAACGAGATATGAGTA
s cb4.chrX              17723968 211 - 21540570 agaatcAATCAGCTGCGCCTTCAAAGAGAAAGTGATTCGAGTCAAGGGAAACGACACTCGGCGAATTCTACACACTCCCTTCCTCCATCTGGGCTCACTGGGCTCGGCTCCGGCTCAGGAGGCTCTAGTGGTGGAG---CACGACAATATAGTGCTCATATTCCTC---TACTGGATAACACCGCTTCATTTTCAGTGTCTCAACGGGACATGAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig15   443543 208 -  1794024 AGAATCAACCAACTTCGTCTCCAACGAGAGAGCGATTCGAGTCAAGGAAAACGTCACTCGGCTAACTCAACTCATTCTCTCCCTCCGTCAGGATTAACTGGTCTTGGATCAGGGTCTGGCGCGTCGA---GTGTGG---CTAGACAGTACAGTGCACATGTACCGC---TTCTTGATAGTAGCACACCATTCACTGTTACTCAACGAGATATGAGTA
i caeRem4.Crem_Contig15 C 0 I 43
s caeSp111.Scaffold582    450279 211 +   484378 agaatcaaCCAACTCCGACttcaaagagaaagtgaTTCAAGTCAGGGAAAACGTCATTCTGCAAATTCTACTCATTCACTTCCGCCGTCGGGTCTGACAGGTCTCGGATCGGGATC---CGGGTCAAGCGGAGGTGCTACTCGTCAGTTCAGTGCTAATGTCTCAT---TGCTAGATAGTAACACTCCATTTACAGTAACTCAGAGAGAAATGAGTA
i caeSp111.Scaffold582  I 35 C 0
s caePb3.Scfld02_0       3618052 211 -  4147112 AGAATAAACCAGCTCCGCCTCCAAAGAGAAAGTGATTCTAGTCAAGGAAAGCGTCACTCTGCAAATTCAACACATTCCCTACCCCCATCTGGTGTTACTGGACTTGGTTCAGGATCAGGTGGTTCCAGTGGTGGTG---GTCGCCAATACAGTGCTCATATTCCAT---TATTAGATAATAACACACCGTTCACAGTGACACAGAGAGATATGAGTA
i caePb3.Scfld02_0      C 0 C 0

a score=1146.000000
s ce10.chrX              2989971 2 + 17718866 AG
s cb4.chrX              17724179 2 - 21540570 AG
i cb4.chrX              C 0 I 29
s caeSp111.Scaffold582    450490 2 +   484378 AG
i caeSp111.Scaffold582  C 0 I 39
s caePb3.Scfld02_0       3618263 2 -  4147112 AG
i caePb3.Scfld02_0      C 0 I 37
e caeRem4.Crem_Contig15   443751 43 -  1794024 I

a score=0.000000
s ce10.chrX              2989973 1228 + 17718866  
e caePb3.Scfld02_0       3618265   37 -  4147112 I
e cb4.chrX              17724181   29 - 21540570 I
e caeSp111.Scaffold582    450492   39 +   484378 I
e caeRem4.Crem_Contig15   443751   43 -  1794024 I

a score=182.000000
s ce10.chrX              2991201 2 + 17718866 TT
s cb4.chrX              17724210 2 - 21540570 tt
i cb4.chrX              I 29 C 0
e caePb3.Scfld02_0       3618265 37 -  4147112 I
e caeSp111.Scaffold582    450492 39 +   484378 I
e caeRem4.Crem_Contig15   443751 43 -  1794024 I

a score=-829.000000
s ce10.chrX              2991203 1 + 17718866 A-
s cb4.chrX              17724212 1 - 21540570 -t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold582    450531 1 +   484378 a-
i caeSp111.Scaffold582  I 39 C 0
e caePb3.Scfld02_0       3618265 37 -  4147112 I
e caeRem4.Crem_Contig15   443751 43 -  1794024 I

a score=67975.000000
s ce10.chrX              2991204 138 + 17718866 TTTCAGAAGCTGAAGATTTCTCCTATGATGATCCTGTTGCAATATCCAGCCGCCCAAAAACAGGCACGCGCAAAACTACAACAGACACCAACATTGATGATTTTGGAGACTTTGATGACAGCCTTTTGCCAGATTGat
s cb4.chrX              17724213 138 - 21540570 tttcaggagaaaACGACTTCTCATACGATGATCCTATCGGTATGACAAACCGCCCAAAAACTGGATCTCGAAAAACTGTCACTGAACTTAGTCCTGACGATTTTGCAGAGTTCGACGAAAGTCTTTTACCAGATTAAT
i cb4.chrX              C 0 N 0
s caeRem4.Crem_Contig15   443794 135 -  1794024 TTTCAGAAGCCGAAGACTTTACGTATGAAGATCCTGTTGTAATGTCATCTCGTCCTAAAACGGGAACAAGAAAAACTGTCACAGATACTAG---CGACGATTTTGGAGAGTTTGATGAAAGTCTCCTTCCGGATTGAT
i caeRem4.Crem_Contig15 I 43 C 0
s caeSp111.Scaffold582    450532 138 +   484378 tttcagagGCTGAAGATTTTTCATACGAAGATCCTGTTGTGACAACAACTCGTCCAAAAACTGGTTCACGGAAGATTACCACTGACAGTAATCTTGATGACTTTGGAGATTTCGACGACAGTCTCCTTCCAGATTAAT
i caeSp111.Scaffold582  C 0 C 0
s caePb3.Scfld02_0       3618302 138 -  4147112 tttcaggAGCAGAAGATTTCTCATACGAAGATCCAGTCACAATGACAACTCGGCCAAAAACAGGTGCCAGAAAAACAACAACGGACAGTAATCTAGATGACTTTGGAGAGTTTGATGAGAGCCTCCTACCGGATTAAC
i caePb3.Scfld02_0      I 37 C 0

a score=-310.000000
s ce10.chrX             2991342 1 + 17718866 a
s caeRem4.Crem_Contig15  443929 1 -  1794024 T
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582   450670 1 +   484378 T
i caeSp111.Scaffold582  C 0 I 9
s caePb3.Scfld02_0      3618440 1 -  4147112 A
i caePb3.Scfld02_0      C 0 I 3518

a score=-1445.000000
s ce10.chrX             2991343 26 + 17718866 atttaat----taaaataaatttGTCTGAT
s caeRem4.Crem_Contig15  443930 23 -  1794024 --TTGATGTTACGACATCATCAAAc-----
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582   450680 28 +   484378 ATTTGAACT--CTATATAATCTTGCATGAT
i caeSp111.Scaffold582  I 9 I 895
e caePb3.Scfld02_0      3618441 3518 -  4147112 I

a score=627.000000
s ce10.chrX             2991369 58 + 17718866 AATAATCATATTTTAACAACCATTTATCACATTT-----------ATTGTGAAAAGCAATAAAGACAAA
s caeRem4.Crem_Contig15  443953 67 -  1794024 aataaattcaattcaat--tcatttctcgctTTCTGAGcttttcaacatttaaaaaaaataaaggcATA
i caeRem4.Crem_Contig15 C 0 I 3058
e caePb3.Scfld02_0      3618441 3518 -  4147112 I
e caeSp111.Scaffold582   450708 895 +   484378 I

a score=0.000000
s ce10.chrX             2991427 5 + 17718866 GACAA
e caePb3.Scfld02_0      3618441 3518 -  4147112 I
e caeSp111.Scaffold582   450708 895 +   484378 I
e caeRem4.Crem_Contig15  444020 3058 -  1794024 I

a score=-560.000000
s ce10.chrX             2991432 17 + 17718866 --GTATAACAATTTTGTTG-
s caeRem4.Crem_Contig15  447078 17 -  1794024 --GTATTGCAA-CTTGTCTA
i caeRem4.Crem_Contig15 I 3058 C 0
s caePb3.Scfld02_0      3621959 18 -  4147112 GTATACATAAG-TTTGTCC-
i caePb3.Scfld02_0      I 3518 I 1
e caeSp111.Scaffold582   450708 895 +   484378 I

a score=33063.000000
s ce10.chrX             2991449 97 + 17718866 AATAAACATTGTAAACGAAGGAGACTTTTGGATCAAGTATGAAATATAAAATTCAGATGGAAAATCCTAAAATGACAAATTGAAACGCTATCTGAAA
s caeRem4.Crem_Contig15  447095 97 -  1794024 AGCAAAATTCGTAAACAAAAGATACTTTCGGATCAAGTACCCATGATAAAATCCATACTGAAAATCCAAGTATGGTAAACGCGAATGCGATCTGAAC
i caeRem4.Crem_Contig15 C 0 C 0
s caeSp111.Scaffold582   451603 97 +   484378 AACAAAATTCATATACAAAAGATACTTTCGGATCAAGTACCCATGATAAAATCCATACTGCAAATCCAAGTATGGTGAAAGCAAATGCAATCTGAAA
i caeSp111.Scaffold582  I 895 N 0
s caePb3.Scfld02_0      3621978 97 -  4147112 CACAAAAGTTATAAACAAAAGATACTTTTGGATCAAGTACCCATGACAATATCCATACTGAAAATCCCAGTATGGTGAATGCAAATGCTATCTGCAA
i caePb3.Scfld02_0      I 1 C 0

a score=198.000000
s ce10.chrX             2991546 23 + 17718866 AAC-----Attgcccgtaatttatattt
s caeRem4.Crem_Contig15  447192 28 -  1794024 AAAATGGAGGTATTTGGAAATTACATAT
i caeRem4.Crem_Contig15 C 0 C 0
s caePb3.Scfld02_0      3622075 20 -  4147112 --------ACTGTTTTTAGgttataatt
i caePb3.Scfld02_0      C 0 N 0

a score=182.000000
s ce10.chrX             2991569 2 + 17718866 tt
s caeRem4.Crem_Contig15  447220 2 -  1794024 TT
i caeRem4.Crem_Contig15 C 0 N 0

a score=2421.000000
s ce10.chrX            3003896 124 + 17718866 GGTTC--CCACCGATCGTATAGTTCCAACACATCGCGTTCTTATGCAAAACAG-----TTTTGTTGTCTTCCTCCTCGGCTCGACGCAATTTCTTTGCGCTATTTTTTTTTCATTTCGATGTGT-TGGCCGA
s caeRem4.Crem_Contig0  212283 120 -  4500979 GGTTCATCCATTGATCGTATAGTTCCAACACATCA---TTTTATGCAAAACGAATGTTTTCTGTtgtcctc-tcttcttctc--------cttttttcaacaatttcttaCTATTATATTGAACACAAACAA
i caeRem4.Crem_Contig0 N 0 C 0

a score=-613.000000
s ce10.chrX            3004020 3 + 17718866 TCC-
s caeRem4.Crem_Contig0  212403 3 -  4500979 CCC-
i caeRem4.Crem_Contig0 C 0 I 8
s caePb3.Scfld02_0     1354439 3 +  4147112 -TCG
i caePb3.Scfld02_0     N 0 C 0

a score=1853.000000
s ce10.chrX            3004023 31 + 17718866 ATCATCAAAAACGTTTTCACGACACAAA-CCT
s cb4.chrX             8054562 30 + 21540570 atcatcaaatttttttt-gctgcaCAAG-ATG
i cb4.chrX             N 0 C 0
s caeRem4.Crem_Contig0  212414 27 -  4500979 ACTATCAAAAACGTT-----TGCACAAGAAAG
i caeRem4.Crem_Contig0 I 8 C 0
s caePb3.Scfld02_0     1354442 24 +  4147112 ATCATCAAAACTT-------TGCACAAG-ATG
i caePb3.Scfld02_0     C 0 C 0

a score=555.000000
s ce10.chrX             3004054 125 + 17718866 CTGCAAGCAATGTTTTATAGAAAGCTGAGGGTGTGTGTGTGTGCCAGATGGTGATACA---CTTTCT---------AACCAACAGTGAATTATATTTCCG----TTTT----------------------------TTTGTTCATTT-CTAAGATTTTTCTCTAAGAAGA
s cb4.chrX              8054592 113 + 21540570 CTGA-TGAAAAGTTTTATAGAAAGATGTA-GTGTATGTGCGTACCAGATGGTGTTACATTACATTCT--------CAGAAGCGCAGAAATTATGTTTCCG--TGTCTT----------------------------TTTGTGC-----------------TAAGATGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   212441 105 -  4500979 CTGC-AGAGGTTTTGTGTAACTCGATGAA-GTGAA----CACACCAGATGGCGAAACGTTTTGTTGT---------ATGAGCCCATGAATTATATTCCTT-CTATTAT----------------------------TTTGTTC---------------------ATAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1354466 143 +  4147112 CTGC-AGAAATGTTTTATAGAAAGATGTGTGTATA----CGCGCCACATGGTGATACA---CACTCG---------TGGAGACAACGAATTATGCTTCCG-CTTTCATCCGAGAAAACCAAAAGTGTAACCAGTAATTTGCTC-----CTA----TTTTCCCAAAGGAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545    5069 137 +   227596 CTGCAGGCAAagttttatagaaaattcta-gTGCG----TACGCCAGATGAtcatacgttttttttttcatttcatagACGACTCATAGTTACATATGcgttcgttcg----------------------------ttcgttcATTCATTCAGCTGTAGTACGCAGAAAA
i caeJap4.Scaffold17545 N 0 C 0

a score=-20604.000000
s ce10.chrX             3004179 561 + 17718866  
s cb4.chrX              8054705 695 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   212546 652 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 568
s caeSp111.Scaffold629   317928 663 - 33334924  
i caeSp111.Scaffold629  N 0 C 0
s caePb3.Scfld02_0      1354609 665 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545    5206 556 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=930.000000
s ce10.chrX             3004740 6 + 17718866 TGGAAA
s cb4.chrX              8055400 6 + 21540570 TGATGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   318591 4 - 33334924 --aaaa
i caeSp111.Scaffold629  C 0 I 1238
s caePb3.Scfld02_0      1355274 4 +  4147112 --AAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545    5762 6 +   227596 AGATGA
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   213198 568 -  4500979 I

a score=-1306.000000
s ce10.chrX             3004746 10 + 17718866 TGAGCAGGCA
s cb4.chrX              8055406 10 + 21540570 TGCTGAAACG
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0      1355278  6 +  4147112 ----AGGGCA
i caePb3.Scfld02_0      C 0 I 636
s caeJap4.Scaffold17545    5768  7 +   227596 TGAGtag---
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   318595 1238 - 33334924 I
e caeRem4.Crem_Contig0   213198 568 -  4500979 I

a score=-1103.000000
s ce10.chrX             3004756 63 + 17718866 ATGTTTTCTGACTTTATTCACAGATTGAGGTACTGTTTT--GAATTGAAAATATTATATTTCTAT
s cb4.chrX              8055418 51 + 21540570 ATGTATTCTAGCTACAATTTgtatttgaaatgttttttt--------------ttgtatttctat
i cb4.chrX              I 2 I 1260
s caeJap4.Scaffold17545    5775 39 +   227596 -tgttt------------------------tatttttatacgCATTGGAATTATAACATTTTAG-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1355284 636 +  4147112 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I
e caeRem4.Crem_Contig0   213198 568 -  4500979 I

a score=495.000000
s ce10.chrX             3004819 15 + 17718866 CTATAAATACTCTAA
s caeJap4.Scaffold17545    5814 15 +   227596 GTAAACATATTCCAA
i caeJap4.Scaffold17545 C 0 I 2277
e caePb3.Scfld02_0      1355284 636 +  4147112 I
e cb4.chrX              8055469 1260 + 21540570 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I
e caeRem4.Crem_Contig0   213198 568 -  4500979 I

a score=0.000000
s ce10.chrX             3004834 1553 + 17718866  
e caePb3.Scfld02_0      1355284  636 +  4147112 I
e caeJap4.Scaffold17545    5829 2277 +   227596 I
e cb4.chrX              8055469 1260 + 21540570 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I
e caeRem4.Crem_Contig0   213198  568 -  4500979 I

a score=92.000000
s ce10.chrX             3006387 14 + 17718866 TAATTTTTCAATGT
s caeRem4.Crem_Contig0   213766 11 -  4500979 taaatttacaa---
i caeRem4.Crem_Contig0  I 568 C 0
e caePb3.Scfld02_0      1355284 636 +  4147112 I
e caeJap4.Scaffold17545    5829 2277 +   227596 I
e cb4.chrX              8055469 1260 + 21540570 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I

a score=1161.000000
s ce10.chrX             3006401 11 + 17718866 GGaattaaaat
s caeRem4.Crem_Contig0   213777 11 -  4500979 aaaattgaact
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      1355920 11 +  4147112 GGATTTCAACT
i caePb3.Scfld02_0      I 636 C 0
e caeJap4.Scaffold17545    5829 2277 +   227596 I
e cb4.chrX              8055469 1260 + 21540570 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I

a score=-867.000000
s ce10.chrX             3006412 18 + 17718866 --taatttgtataaaaaaat
s cb4.chrX              8056729 18 + 21540570 --TGAATTATTTCAAGACGG
i cb4.chrX              I 1260 C 0
s caeRem4.Crem_Contig0   213792 18 -  4500979 --TGATCTGATCATAGTGAA
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      1355931 20 +  4147112 TACTAATTACTAAAATAGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545    5829 2277 +   227596 I
e caeSp111.Scaffold629   318595 1238 - 33334924 I

a score=780.000000
s ce10.chrX             3006430 2 + 17718866 tC
s cb4.chrX              8056747 2 + 21540570 CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   213810 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17545    8106 2 +   227596 TC
i caeJap4.Scaffold17545 I 2277 C 0
e caePb3.Scfld02_0      1355951 0 +  4147112 C
e caeSp111.Scaffold629   318595 1238 - 33334924 I

a score=21527.000000
s ce10.chrX             3006432 153 + 17718866 CTCTTTCGACTGGCAACGCTCAAAAGTCCTGTGACAAAC--ATTCAGATGTTGTCGCACAGAAGACGTTTGTGCGTTGCTAGTCGTTCAAGAGTATAGATACACAATATGC----------AATAGAAACAAT-AAGAAAT-----AATAT-----GACAGCGCCAA-------------------------TGAAATAAG
s cb4.chrX              8056749 165 + 21540570 CTTCTCCGACTAGCAACACTCAAAAATCCTGTGACAAAA--TATAGTCATTTGTCGTACAG-TGATTTTTGAGCGTTGCTAGTAGCATTGAGGGC---GCACAAAATAACA----------Aatagcaaaaat-gaaaaat-----aaggtGCAA-GAAGAGAACAA-------------GGAGGGAATAGTAGTAGTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   213812 185 -  4500979 TTCTTTCAACTAGCAACGCTCAAAAGTCCTGTgacaaaa--tttcat-atttgtcGCACAG-AAACTTTTGTGCGTTGCTAGTCACgtagaaa-------acaaaatagaagtaatgagagaatagaaaaaatagagaaat-----gaatagCAGTGATGTGTGCGACTTGATGCAGTCGGCAAGTTATGATAGTGATAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   319833 168 - 33334924 CTTTTTTGACTAGCAACGCTCAAAAATCCTGTGAAAAA---TCATATATTTTgttgaacagaaaatttcTGAGCGTCGCTAGTGCTGAACAAAGA---GCaatgaatagaa----------g-------aaaa-aagtaatacACAAGTTTGTAG-AATCACAGCAG-----TACGACCAGTTTTCATT---AGTGATAAG
i caeSp111.Scaffold629  I 1238 C 0
s caePb3.Scfld02_0      1355951 174 +  4147112 TCTCATTAACCAGCAACGCTCAAAAGTCCTGTGACAAAAT-TTCTGTACTCTGTCTAACAGTAGACTTCT-AGCGTTGCTAGTAGCTcagagaga---caaaaaaataaaa----------gttagaCAAAAA-TAGTAGT-----TGTGTGTGT-GTTCACTCAAA-----TACAACCGACTAGCCATGACATTGATAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545    8108 136 +   227596 -CTCTATAACTAGCAACGCTCAAAAGTCCTGTGACAAGCTCACCATTTCTTTGCCTCACAG-TAATCTTTTGGCGCCGCTAG------ACAGGGAGaggaaaacaatttaa----------aagaaagaaaat-aaaacac-----aGT-------AGTGAAAGAAG----------------------------------
i caeJap4.Scaffold17545 C 0 I 21

a score=-13356.000000
s ce10.chrX             3006585  58 + 17718866 ------GGGAAAAT------TTTGCGGCATCGTTGCATG---CACAA------------------------------------------------------------------GATAC--------TA----GTGTTTGATTAGAGTCCGA
s cb4.chrX              8056914 147 + 21540570 AGTT-CAAGCGAATGCGGTCGGTGGGTTATGATAAGAGATAAGAGAGTGTACAAAACACAAGTTGTGGCTtccccctcttttttcttgagaatCAGACAAAACAATTAGACGAGATAAGGAATTT-TGTGGTGTGTCTGAT--ACATTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   213997  84 -  4500979 AATG--GGGAGAATTAGGG-AGTGTGTCGTCTAGAGATGTAACAGAA----------AAAGGTT-------------------------------------------------GATAAGGGCTGT-TG----ATGTTTGATTGTCATTCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   320001  82 - 33334924 AAACTCGTACGAATATAAC-ATTTCGGCTT-----GATTGAACAGAG----------TAATGAT-------------------------------------------------GATAAGAAGTCGGTG----ATGTTTGATTAGAGtcgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1356125  81 +  4147112 AGAGGCAAACAAACATAA--AGTACGGCTTCACAGGATAGAACAAAG----------AAAAGGC-------------------------------------------------GATAAGAA-----TG----ATGTCTGATTGCCATTCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545    8244  21 +   227596 I

a score=38942.000000
s ce10.chrX             3006643 62 + 17718866 TGTTC-TTTTTTATAGACACACTGAGGATATACTTTGACGTAATGAAAATCCTGAGTTAATCT
s cb4.chrX              8057061 62 + 21540570 CGTTCGTTTTTTATAG-CGAACTAAGGATAAACTTTGACGTAATAGATGTCGTGAGTTAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   214081 59 -  4500979 CGTTC---TTTTATAG-CGAACTACGGATAAACTTTGACGTAATCAGGATGGTGCATTAATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   320083 61 - 33334924 tattc-ttttttatag-cGAGCTAAAGATATACTTTGACGTAATATCAATCTCGCATTAATCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1356206 61 +  4147112 TGTTC-TTTTTTATAG-CTAACCGAGGACGAGGTTTGACGTAGCATCAATCTTGTATTAATCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545    8265 62 +   227596 tgtta-tattttaTATAAATCCCGAGGATGATATTTGACGTAATAAGTGTCTTGCATTAATCT
i caeJap4.Scaffold17545 I 21 I 5743

a score=16842.000000
s ce10.chrX             3006705 56 + 17718866 GTCTAA-ATGCTACA-------------ACTTGTGACGAAATATGCAGGAGAAATTGACGAAAGCAAAGT
s cb4.chrX              8057123 64 + 21540570 GCTCACATTGGTACATGATTTGGATAACGCGTGTGacgaaatat------gaaaatgacGGAAGCAAAGT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   214140 63 -  4500979 TTTCAT-TTGATACAGGATTTGGCTAAAACTTGTGATGAAATAT------GAAAGTGACGGAAGCAATGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   320144 47 - 33334924 TCTCAT-TTGATACAACATTTGCTAAGGACC----------------------TATGACGAAAGCaatgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1356267 63 +  4147112 CTTCAT-TTGATACAAGATTTGGCTGAAACCTGTGACGAAATAT------GAGTGTGACGAAAACAAGGT
i caePb3.Scfld02_0      C 0 I 4539
e caeJap4.Scaffold17545    8327 5743 +   227596 I

a score=546.000000
s ce10.chrX             3006761 1 + 17718866 T
s cb4.chrX              8057188 1 + 21540570 T
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   214204 1 -  4500979 T
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   320191 1 - 33334924 t
i caeSp111.Scaffold629  C 0 I 1315
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I

a score=-1030.000000
s ce10.chrX             3006762 11 + 17718866 AG----TAAATACAA
s cb4.chrX              8057189 10 + 21540570 AAGTGGTGAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   214205 11 -  4500979 AC----TGAAAACAA
i caeRem4.Crem_Contig0  C 0 I 3685
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I
e caeSp111.Scaffold629   320192 1315 - 33334924 I

a score=668.000000
s ce10.chrX             3006773 26 + 17718866 ACAAGAATGCCGGGAAAACAAGAGGG
s cb4.chrX              8057199 22 + 21540570 ACAAAAAT----AGTAAACACTAGGG
i cb4.chrX              C 0 I 7395
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I
e caeSp111.Scaffold629   320192 1315 - 33334924 I
e caeRem4.Crem_Contig0   214216 3685 -  4500979 I

a score=0.000000
s ce10.chrX             3006799 5174 + 17718866  
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I
e cb4.chrX              8057221 7395 + 21540570 I
e caeSp111.Scaffold629   320192 1315 - 33334924 I
e caeRem4.Crem_Contig0   214216 3685 -  4500979 I

a score=448.000000
s ce10.chrX             3011973 22 + 17718866 AATCTGATAACTGACATAACAC
s caeRem4.Crem_Contig0   217901 22 -  4500979 AACGTGACGTTTATCACaacaa
i caeRem4.Crem_Contig0  I 3685 C 0
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I
e cb4.chrX              8057221 7395 + 21540570 I
e caeSp111.Scaffold629   320192 1315 - 33334924 I

a score=1665.000000
s ce10.chrX             3011995 36 + 17718866 AAAGCATACTTTTTCATCGTTTGAAAGCTCAATGAA
s cb4.chrX              8064616 35 + 21540570 aaaaca-actttttgattttttggtaatttcctTAA
i cb4.chrX              I 7395 C 0
s caeRem4.Crem_Contig0   217923 34 -  4500979 -aaatc-atcatttaATCTATTGTCGATTCAGTGAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I
e caeSp111.Scaffold629   320192 1315 - 33334924 I

a score=4684.000000
s ce10.chrX             3012031 63 + 17718866 TCAATTCCTAAAATGCACAGAGTTGGAGGTAATTATTCTTTTCAACACACGTCAACCATGAAC
s cb4.chrX              8064651 51 + 21540570 ---------GACAATACGAAAAGCAGAAATAATTGGTTCTTTCATACTCACTCGACGGGA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   217957 60 -  4500979 TAAGTTTCCGGTGAAACCGAATGCGGAACTAATTGGTCTTTTCATTATCGCTCAGCCAGA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   321507 60 - 33334924 TCATTTCCTGAGAATCCGGAATGCGTAACTAATTGGTCCATTCATCTCATGTCAACcgaa---
i caeSp111.Scaffold629  I 1315 C 0
e caePb3.Scfld02_0      1356330 4539 +  4147112 I
e caeJap4.Scaffold17545    8327 5743 +   227596 I

a score=11794.000000
s ce10.chrX             3012094 36 + 17718866 AAATCTGCTTTTCAA-CATTGTTCAGA-AAACAATTGA
s cb4.chrX              8064702 38 + 21540570 AAATCTGCTTTTCAACCTTTGTTCATTTAGAACTCCGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   218017 27 -  4500979 AAATCTGCTTTTCAATGGTTGTTCATC-----------
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   321567 37 - 33334924 aaatctgtttttcaacCTTTGTTCGGA-AGAACGTTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1360869 37 +  4147112 aaatctgattttcattctttgttcATC-AGAACACAGA
i caePb3.Scfld02_0      I 4539 C 0
e caeJap4.Scaffold17545    8327 5743 +   227596 I

a score=155.000000
s ce10.chrX             3012130 3 + 17718866 TAG
s cb4.chrX              8064740 3 + 21540570 CAG
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold629   321604 3 - 33334924 CAG
i caeSp111.Scaffold629  C 0 I 28
s caePb3.Scfld02_0      1360906 3 +  4147112 GAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   14070 3 +   227596 TGG
i caeJap4.Scaffold17545 I 5743 C 0
e caeRem4.Crem_Contig0   218044 13 -  4500979 I

a score=-1146.000000
s ce10.chrX             3012133 10 + 17718866 ACACACAACT
s cb4.chrX              8064758  8 + 21540570 --ACGTAAGA
i cb4.chrX              I 15 I 2
s caeRem4.Crem_Contig0   218057  6 -  4500979 ----ACAATT
i caeRem4.Crem_Contig0  I 13 I 2
s caePb3.Scfld02_0      1360909 10 +  4147112 TCATATAATT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17545   14073  7 +   227596 --ACACACT-
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   321607 28 - 33334924 I

a score=-232.000000
s ce10.chrX             3012143 14 + 17718866 ACATTACTCAAAAA
s cb4.chrX              8064768 14 + 21540570 GTTTTGTTATTATT
i cb4.chrX              I 2 I 1
s caeRem4.Crem_Contig0   218065 14 -  4500979 atattattcttttt
i caeRem4.Crem_Contig0  I 2 I 1
s caeJap4.Scaffold17545   14080 14 +   227596 ACATCAtctaaaaa
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1360919 10 +  4147112 I
e caeSp111.Scaffold629   321607 28 - 33334924 I

a score=376.000000
s ce10.chrX             3012157 12 + 17718866 TTAGACGAACTG---
s cb4.chrX              8064783 12 + 21540570 TCTAATCGAATG---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   218080 12 -  4500979 tctgatgaaatg---
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      1360929 12 +  4147112 TTTGATTGACCG---
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17545   14094 12 +   227596 ---aatgaatttatg
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   321607 28 - 33334924 I

a score=153753.000000
s ce10.chrX             3012169 190 + 17718866 TGTTTGACGTAACAGGAAATGATTCATTTAATCGTATGGAGCTCTAGAATTGACAACGTTTAGTATCATTGTTGAAAAGAGACAA------AAACTTAATATTAAGTGATTGAAATGAGACGCTCG-GAAGAAAAGAAGA--AAAACAACGAG---ATCATCG---AATTGTCGCTGGCACATTTTACATTCACATT------CATCTGAA
s cb4.chrX              8064795 200 + 21540570 CGTTTGACGTAACAGGAAATGATTCATTTAATCGCATGGAGCTCTAGAGTTGACAACGTATAGTATCATTGTTGAAAAGAGACAGGAGGAAAAA--TGGGAGTAA--GAGTTAACTGAGACATTCT-TAATAGAGGAGAAGAATAATAACGAG---ATCGTCG---AGTTGTCGTTGGCGCACTTTTGAAATAAATCGTCCATCATCTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   218092 191 -  4500979 AGTTTGACGTAACAGGAAATGATTCATTTAATCGTATGGAGCTCTAGAGTTGACAACGTATAGTATCATTGTTGAAAAGAGACAAGAGGAAATAGTCAATATTAATTGATTTAAATGAGACGTtct-gaagagagaaaaa----------gag---atcatCA---AATTGTCGTTGGCgcacttttgaaataaatcGTC---CATCTGAA
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold629   321635 196 - 33334924 TGTTTGACGTAACaggaaatgattcatttaaTCGTATGGAGCTCTAGAGTTGACAACGTATAGTATCATTGTTGAAAAGAgacaagaggaaaaaaataaaatagagtGAGCTAAATGAGACGctctggaaaagaagaaaa---------cgagatcATCATCA---ATTTGTCGTTGGCGcacttttgaaataaatcgtc---catctgaa
i caeSp111.Scaffold629  I 28 I 6
s caePb3.Scfld02_0      1360941 194 +  4147112 CATTTAACGTAACAGGAAATGATTCATTTAATCGCATGGAGCTCTAGAGTTGACAACGTATAGTATCATTGTtgaaaagagacaa-aagaaaaagttaaaaataagtgatttaaatgagacgctct-gagaaaagaaaaa---------cgag---atcATCA---ATTTGTCGTTGGCgcacttttgaaataaatcGTCCATCATCTGAA
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17545   14106 193 +   227596 tACTGGGGTTAACAGAAATTGATTCATTCAATCGTATGGAGCGCTAGAGTTGACAACGTAAATTATCATTGTTGAAAAGAGACAGGAAGAAAATATCA----TAAGTGATTCAATTagaagattgc-gagaagaagaagaagagaagtaCGAG---ATCATCAGCCATCGGTCGCTGGCACATTTC----ACGAGCC------CATCTAAA
i caeJap4.Scaffold17545 C 0 C 0

a score=-9287.000000
s ce10.chrX             3012359 44 + 17718866 ACTTGATACATGTCAGACTGGCAAAATCTTAT-TTAGA--AACTTAC
s cb4.chrX              8064995 40 + 21540570 AATTACAGGTTTTGAA------CAGAGTACAG-CCCGATTTCCTTAC
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold629   321837 36 - 33334924 tgttcACGATTC-----------ATATTTCATACCAGGATAATTTAC
i caeSp111.Scaffold629  I 6 I 4
s caePb3.Scfld02_0      1361142 40 +  4147112 AGTTTAGACTTCATTA------AATACTTCAT-TATTGAGAACTTAC
i caePb3.Scfld02_0      I 7 I 4
s caeJap4.Scaffold17545   14299 39 +   227596 GATGCAAATTTGTAAT------GACGTCACAG-ATTGA-TTCCTTAC
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   218283 47 -  4500979 I

a score=288605.000000
s ce10.chrX             3012403 419 + 17718866 AATTTACTTCCGTCCGAATCGGAGAACACCTGGCACACTTTTCTTGAGCAAAACCCCTGCGTAATGCTCTTCCAAGTCGGATCGCTTTCCAAATCT-GAA----AACAA---AAACCTTGGTA----AGC----------TGGATGAAGTCTT---AAAATGATCG-GACCTCAATACACCGGGAACATCGCGTTTTCCGAAACGGAGAACTCCGGGCACTTCACTGCGCTTGTCGAACGAATCAGCCATGTAATCTCTCTTTCCGAATCTCAACACTCCTGGGATCTCCCGTTTGTCCATTGGCACATCACGTTTTCCGAAACGAAGAACGCCTAAAAACTGAGATGTTATTTGA-----TTTAGAATA--------GATGATGATGCCACCTGGAACACTTTTCTTCTCATCGAAATATGAGCGTTTCCCGAAGCGAAGAACTCCTGAAAG-------TCAAT
s cb4.chrX              8065039 373 + 21540570 AATTCATTTGCGTCCGAAGCGGAGAACTCCTGGGACACTTTTCTTGAGCAAAACCCCAGCGTAATGCTCTTCCAAATCAGATCGTTTTCCAAATCT-ATA----AACAA---AA-----CATA----TGT-------------GCGTGGCCCTGAGAATATGAACCAAACCTCAAAACTCCGGGAACATCGCGCTTTCCGAACCGAAGAACTCCGGGCACTTCGCTGCGTTTGTCAAACATCTCCTCCGTGTAATCTCTCTTTCCGAATCTCAACACTCCTGGGATCTCCCGTTTGTCCATTGGCACGTCACGTTTTCCGAAACGAAGAACG-----------------------------------------------------------CCCGGAACACTTTTCTTCTCGTCAAAGTATGAGCGTTTTCCGAAACGGAGAactcctgaaaa---aatgttgat
i cb4.chrX              I 4 I 8
s caeRem4.Crem_Contig0   218330 432 -  4500979 AATTTACTTGCGACCGAAGCGGAGAACACCTGGCACACTTTTCTTAAGCAAGACCCCTGCGTAATGCTCTTCGA---TAGATCTttttccgaatct-gaa----aacaa---aag---tcaTA----TGTTATAGTTGAGCGAGGGTGGTCT----GATACGAGCT-AACCTCAAAACTCCGGGAACATCGCGTTTTCCAAATCGAAGGACTCCGGGAACTTCGCTGCGTTTGTCGAACAACTCGTTCATGTAATCTCTCTTTCCGAATCTCAACACTCCTGGGATCTCCCGTTTGTCCATCGGCACGTCACGTTTTCCGAAGCGAAGAACGcctagaaaa----taattatttggaTTAGTTTGAATTTAGATTCT-GCTGAT-----TACCTGGaacacttttcttttcatcgaAATAAGAACGCTTTCCGAAACGAagaactcctaaaaacagaagGTAAAT
i caeRem4.Crem_Contig0  I 47 I 20
s caeSp111.Scaffold629   321877 409 - 33334924 TATTTATTTGCGACCGAAGCGAAGAACACCTGGAACGCTTTTCTTGAGCAAGACCCCAGCGTAATGCTCTTCCATGTCAGATCGTTTTCcaaatct-aaa----aacaa-acaaG---TAATG----TGC-----------GTAGGGGGAT-----TTGATGAGCCAAACCTCAAAACTCCGGGAACATCGCGTTTTCCGAATCTGAGAACTCCGGGTACTTCGCTGCGTTTGTCGAACAACTCAGTCATgtaatctctttttccgaaTCTCAACACTCCTGGGATCTCCCGTTTGTCCATTGGCACGTCACGTTTTCCGAAGCGAAGAACGCCTTAAG------AAAACACTTGG------TTAAGCTAACAATCT-GATGGTTAA--TACCTggaacacttttcttctcatcgaaATAAGATCGTTTTCCGAAGCGGAGTACTCCTGAAAT------------
i caeSp111.Scaffold629  I 4 I 1
s caePb3.Scfld02_0      1361186 417 +  4147112 AATTTATTTGCGACCGAAGCGAAGAACTCCTGGAACgctttttttgagcaaaaccCCTGCGTAGTGCTCTTCCAAGTCAGATCGTTttccgaatctgaaa----aacaa-ataaa---taatacCACTGC-----------GGGGGTGGTT-----ATTATGAGCC-GACCTCAAAACTCCGGGAACATCGCGCTTTCCGAATCTGAGAACTCCGGGCACTTCACTGCGTTTGTCGAACAACTCAGTCATGTAATCTCTCTTTCCGAATCTCAACACTCCTGGGATCTCCCGTTTGTCCATTGGCACGTCACGTTTTCCAAAGCGAAGAACGCCTAGAGAAT---AAAAGACTTGG-------AAAACTACAAGTCCAGATACTCGA-TTACCTGgaacacttttcttttcatcgaaGTATGAGCGTTTTCCGAAGCGAAGCACTCCTGAAAG------------
i caePb3.Scfld02_0      I 4 I 3
s caeJap4.Scaffold17545   14338 356 +   227596 TGTTCACTTGCGCCCGAAGCGGAGGACACCTGGGACGCTCTTTTTTAGCAGCACTCCTGCATAGTGCTCTTCGAAATCTGATCGTTTTCCGAATCT-AAAGAATAACAACATGAG---TACAA----TGC-----------GTGGGCTGT------TATGTCTGCA-AACCTCAAAACACCGGGAACACCACGTTTACCAAAGCGAAGCACTCCTGGAACTTCGCTACGCTTGTCAAACAATTCTGCCATGTAATCTCTCTTTCCGAATCTCAAAACTCCTGGAATCTCCCGTTTGTCCATTGGCACATCTCGTTTTCCAAAACGAAGAACtcctgaatta----aaaaaaaatgc----------------aattt-aatGAAAGG---------------TTGGTTCATATTGAAA-----------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0

a score=-4507.000000
s ce10.chrX             3012822 16 + 17718866 TTTCAGTATGCAATAA
s cb4.chrX              8065420  8 + 21540570 tggaaaaa--------
i cb4.chrX              I 8 I 18
s caeSp111.Scaffold629   322287 11 - 33334924 TTATGATATgc-----
i caeSp111.Scaffold629  I 1 I 18
s caePb3.Scfld02_0      1361606 11 +  4147112 TGATGTAATGA-----
i caePb3.Scfld02_0      I 3 I 20
s caeJap4.Scaffold17545   14694  5 +   227596 ----AGTAT-------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   218762 20 -  4500979 I

a score=0.000000
s ce10.chrX             3012838 13 + 17718866 ACCAACAAGGAAC
e caePb3.Scfld02_0      1361617 20 +  4147112 I
e caeJap4.Scaffold17545   14699  0 +   227596 C
e cb4.chrX              8065428 18 + 21540570 I
e caeSp111.Scaffold629   322298 18 - 33334924 I
e caeRem4.Crem_Contig0   218762 20 -  4500979 I

a score=607.000000
s ce10.chrX             3012851 2 + 17718866 TA
s cb4.chrX              8065446 2 + 21540570 TT
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   218782 2 -  4500979 TG
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold629   322316 2 - 33334924 TA
i caeSp111.Scaffold629  I 18 C 0
s caeJap4.Scaffold17545   14699 2 +   227596 TA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1361617 20 +  4147112 I

a score=185715.000000
s ce10.chrX             3012853 162 + 17718866 CTTACCTGGAACACTTTTCTTCTCGTCAAAATATGCACGTTTACCGAAACGGAGCACTCCCGGCATTTCTTTTTTCTGCACACTGCTTTCTCTTTTTTCCCAAACACCTCCACGTTTTCCAAAGCGCAACACACCTGGCATCGCCCCATCAAAGTCTGAAAT
s cb4.chrX              8065448 162 + 21540570 ATTACCTGGAACACTTTTCTTCTCATCGAAATAGGCACGTTTTCCGAAGCGAAGCACTCCTGgcatttcctttttctgcaCGCTGCTCTCCCTTTTCTCCCAAACACCTCCACGCTTTCCGAAGCGCAACACACCTGGCATCGCCCCATCGAAGTCTGGAAC
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   218784 162 -  4500979 ATTACCTGGAacactcttcttttcatcgAAGTAAGCACGTTTTCCGAAACGGAGAACTCCCGGCATCTCCTTTTTCTGAACACTGCTCTCCCGTTTCTCCCATGCTCCTCCGCGTTTTCCAAAACGCAACACACCTGGCATCGCCCCATCAAAGTCTGTAAT
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   322318 162 - 33334924 GTTACCTGGAAcgcttttcttctcatcaaaaTAGGCACGTTTCCCGAAGCGAAGAACTCCTGGcatctctttcttttgaacgctgctttctcttttctcccaGACACCTCCACGTTTTCCAAAGCGCAACACACCTGGCATCGCCCCATCAAAGTCTGAAAT
i caeSp111.Scaffold629  C 0 I 39
s caePb3.Scfld02_0      1361637 162 +  4147112 TTTACCTGGAACACTCTTCTTCTCGTCGAAATAGGCACGTTTTCCGAAGCGCAGAACTCCTGgcatctccttcttctgaacactgctctctcttttctcccagACACCTCCACGTTTTCCAAAGCGCAACACACCTGGCATTGCCCCATCAAAGTCTAAAAT
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold17545   14701 162 +   227596 TTTACCTGGAACACTCTTCTTCTCATCAAAGTAAGCACGTTTTCCGAAACGGAGAACTCCCGGCATCTCCTTCTTCTGAACGCTGCTATCCCTCTTTTCCCAAACACCACCGCGTTTTCCAAAGCGCAACACTCCTGGCATTGCACCGTCAAAATCTGGAAG
i caeJap4.Scaffold17545 C 0 C 0

a score=-1944.000000
s ce10.chrX             3013015 8 + 17718866 ----TAGACAAA
s cb4.chrX              8065619 4 + 21540570 ----TAGA----
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   218955 5 -  4500979 ----CTGA---G
i caeRem4.Crem_Contig0  I 9 C 0
s caeJap4.Scaffold17545   14863 8 +   227596 TTGGTAAA----
i caeJap4.Scaffold17545 C 0 I 30
e caePb3.Scfld02_0      1361799 0 +  4147112 C
e caeSp111.Scaffold629   322480 39 - 33334924 I

a score=-7153.000000
s ce10.chrX             3013023 21 + 17718866 AAATTGATGGTT-AGTTGTACG---------------------------------
s cb4.chrX              8065623 17 + 21540570 -------------TGTCATACC-------------------------GTAACCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   218960 55 -  4500979 AACTTCAAGATACTGTTTTATCAGTTAATGATGTGTCCTCTTTTTAGGTCACATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1361799 28 +  4147112 -------------TATTCCATC------------ttcatggttttttggaaCT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   14871 30 +   227596 I
e caeSp111.Scaffold629   322480 39 - 33334924 I

a score=-6657.000000
s ce10.chrX             3013044 10 + 17718866 AAGAATTTTG----------------
s cb4.chrX              8065640  4 + 21540570 AGCG----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   219015 26 -  4500979 Agcaattttgcttttttctcaattct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   322519 18 - 33334924 ATAGATTTTGAG--------AATACA
i caeSp111.Scaffold629  I 39 C 0
s caePb3.Scfld02_0      1361827 10 +  4147112 ---AATTTT-------------TATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   14871 30 +   227596 I

a score=96966.000000
s ce10.chrX             3013054 110 + 17718866 TACCTCTTTTTGAGAATACCCGACCGTCTTGTTTCTCGTTGGTCCGAGTCACTTCGATATCCTCTGCTGGTATGTCTTCTTCGACGATTTCATAGACTG-AAAAT-ATAAGT
s cb4.chrX              8065644 108 + 21540570 TACCTCGTTTATTGAAGACCCGACCGTCTTGTTTCTCGTTTCCTCGAGTCACTTCAATATCCTCTGCTGGTATGTCGTCTTCGACGATCTCATAGACTG-AAA---AGTGAT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   219041 109 -  4500979 cacCTCGTTTAGAGAACACCCGACCATCTTGTTTCTCATTGCTCCGAGATATCTCCATGTCCTCTGTTGGTATGTCGTCCTCGACGATCTCATAGACTGCAAA---ACAGAT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   322537 110 - 33334924 CACCTCGTTTAGAGAAAACCCGACCATCTTGCTTCTCATTGGTCCGAGCAACTTCGATATCCTCTGCTGGTATGTCATCTTCGACGATCTCAtagactg-aaaaa-atagat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1361837 111 +  4147112 TACCTCTCTTGGAAAATACCCGGCCATCCTGTTTCTCATTGGTCCGAGCCACTTCGATATCCTCTGCTGGTATGTCATCCTCGACGATCtcataaactg-aaaaacatagaT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17545   14901 111 +   227596 TACCACGTTTATTGAACACCCGACCGTCAGGTTTTTCATTGTTTCGAAGAGCCTCAAAATCCTCCACAGGCACATCCTCTTCGACGATCTCATAGACTG-AAACACAcaagt
i caeJap4.Scaffold17545 I 30 C 0

a score=-5000.000000
s ce10.chrX             3013164 26 + 17718866 ---TGTTTCAATGTGCCGTCT-TGTATTTA
s cb4.chrX              8065755  8 + 21540570 ---ta-----------cattta--------
i cb4.chrX              I 3 I 18
s caeRem4.Crem_Contig0   219153 18 -  4500979 ---TGTTTCAGTGGatcattt---------
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      1361951 14 +  4147112 ---TGTTTCGATGAGTC-------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545   15012 21 +   227596 tttcgttttcgtttatttttt---------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   322647  0 - 33334924 C

a score=-5061.000000
s ce10.chrX             3013190 55 + 17718866 GGGCTGCCATATCGGACGTCCGGCGTCCGACAATTTCCGAGTTGAGCCACTCATT--
s caeRem4.Crem_Contig0   219171  8 -  4500979 -----------------------------------------------cattcatt--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1361965  9 +  4147112 ----------------------------------------------CTATTTATT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   15033  7 +   227596 --------------------------------------------------tttttgc
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8065763 18 + 21540570 I
e caeSp111.Scaffold629   322647  0 - 33334924 C

a score=-2946.000000
s ce10.chrX             3013245 52 + 17718866 ATAAAAT-------TATATGATTATGTATAGTGAGTGGTCAAACTCGGAAGTTATCGGA
s caePb3.Scfld02_0      1361974 17 +  4147112 GTGAA---------TATATGTTTTTA---------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   15040 23 +   227596 ataaaatccaATTGTATGTGAGC------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8065763 18 + 21540570 I
e caeSp111.Scaffold629   322647  0 - 33334924 C
e caeRem4.Crem_Contig0   219179  0 -  4500979 C

a score=-1519.000000
s ce10.chrX             3013297 23 + 17718866 CGCCGTGAAAAACTACCCCTTGG
s caeSp111.Scaffold629   322647  7 - 33334924 ctCCGTA----------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   15063 14 +   227596 CCCGGTGGGagagg---------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1361991  0 +  4147112 C
e cb4.chrX              8065763 18 + 21540570 I
e caeRem4.Crem_Contig0   219179  0 -  4500979 C

a score=575.000000
s ce10.chrX             3013320 9 + 17718866 AAAAAAAAG
s caeJap4.Scaffold17545   15077 9 +   227596 aagaaaaaa
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1361991 0 +  4147112 C
e cb4.chrX              8065763 18 + 21540570 I
e caeSp111.Scaffold629   322654 0 - 33334924 C
e caeRem4.Crem_Contig0   219179 0 -  4500979 C

a score=0.000000
s ce10.chrX             3013329 32 + 17718866 TTTGCGCCCCTATCGGACGCTAAGCGTCCAAA
e caePb3.Scfld02_0      1361991  0 +  4147112 C
e caeJap4.Scaffold17545   15086  0 +   227596 C
e cb4.chrX              8065763 18 + 21540570 I
e caeSp111.Scaffold629   322654  0 - 33334924 C
e caeRem4.Crem_Contig0   219179  0 -  4500979 C

a score=-11250.000000
s ce10.chrX             3013361 108 + 17718866 TTCCTCCTAATTGCAGTTATGTATGTGTTTCGATCGACCTTACGAGAATTTTCAAAAATTTCAAATTCATGCTTTCAAATCGACACAATTCAATTGTGCACC-CCTGTT
s cb4.chrX              8065781  35 + 21540570 --------------------------------------------------------------------TTCCCTATatg--aa-aaaaacctatttcG--TT-CCtgtg
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   219179  32 -  4500979 --------------------------------------------------------------------tttcttttatg------aaATCCAATTCTA--CC-CCTgta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   322654  57 - 33334924 ----------------------ATGTGTTTCAATggttct-------------------------tttctatttttaag--aacaaaatctaattttc--gC-CCTGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1361991  30 +  4147112 ---------------------------------------------------------------------------TAAG--AGcccaattgaattttt--tcttctgta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   15086   0 +   227596 C

a score=94121.000000
s ce10.chrX             3013469 459 + 17718866  
s cb4.chrX              8065816 375 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   219211 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   322711 437 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1362021 444 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   15086 523 +   227596  
i caeJap4.Scaffold17545 C 0 I 128

a score=-27693.000000
s ce10.chrX             3013928 202 + 17718866 GTTTGAACACCGCGCAAAA--TTATTTC------------------------AGCTAACTAC-GTCAGGT----------CCAGAATTTTGAAAAAAAA----------------------CTAATGTACGCGAAACCAACGTTTCGACAAACTACA----------AAGttaa---------aaattttaaaataaaattCAAGATTACATTAA-GACAAATTA--------TTGCCGTCATTTTATTCAATCTTCCACGCTGATCTGGGGCTATCCAAACTC--CCT-----TC
s cb4.chrX              8066191 153 + 21540570 tcCTGAG-ACTTAACACagatttgttat-----------------------------------tttcagt------tt--------tttg--------gtaACT-----------------CTGGAGTACTGTA-ACAAAACTACAAAG------CA----------CAATTTGTT-------------------------CTCAATTACATTAACAACAGTCCTTTCCAAACTTG-CGTCACTGAAT----------A-AAAGACGTGGA------------C--CCTTTCTACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   219666 221 -  4500979 GTTTGAACACCAcgcaaaaacttatttttacaCTGGAAATGta---------aatcatcatcatctcagC------TTCCCCACAATTTGAACTGACAGGTATT-----------------TTGCTGAACAAGA-ATAAGAACACAAAA------CACACCACCACGCAATTTGATGATACGGAAACTTTGACCTAA----CGCAATTCCATTTG-GATAGTTTTT-------ATG-CGTCACAAGCT---GACCTCCA-GAAGATGTGAG------------C--CCC-----CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   323148 222 - 33334924 CATTGAACACAAAGTAAAACGTTATTTCCATAAT-ACACCGTATGATTTCATAACCATGATT-CTTAAGT------ATTGCtgtcattttcagtgaaag-gattactgtaggtaaaCGGGTTTAGGGCACAGAACACA---ATTTCAAT------CA----------AGGTCAGTG----GGCGAACCTT-----------CCCAATCGCATTTA-CATAGTTTC--------ATG-CGTCATGGTCA---GACTTCCA-AAAGATGTTAG------------CTTCTT-----CC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1362465 222 +  4147112 GTTTGAGCACTCCGGAAAACGTTATTTTTGCACTGGAAACGTGTGATTTTCCAGTCACTATA-AATAAATTCCCTACCTCtcgtcatttcaaaaaaaagaaattacagtagaaaa------tgaatgaacaaaACACAAAGACCCCAAT----TCCA----------AAGTTTG---------AAACCTG-----------CACAATCTCATTTA-CATAGTCTT--------TTA-CGTCATCTACT---GACCTCCA-GAAGATGCTAG------------C--CTC-----CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   15609 128 +   227596 I

a score=80622.000000
s ce10.chrX             3014130 258 + 17718866 AAACCCAATTAAGAGATTGGATCAGC----------------------CAAGACT---------------TTT---------------------------------CTTTGTTTCG--TTCATC--------------AAGAACTTACTTGGTTCGGTATATGCGAGCGCCCCACGAAGCAAACAACACAGCGAAATGAGAAGAACGCCCGACCACCGTTGCATGTCTAACCCTG-AAATTATT---ATTTTTAGTTGTTAAAGCAATC----GTTAT--------------TGTAGT---------------TAAATAATAAAC--------------------------------------------------------------GTCT-TGATGCCAATAATATGAAA--------------TATGA--GAGTATTAAGCTTCTAGCCTCTTTCCTC
s cb4.chrX              8066344 365 + 21540570 CGATTCAATTAAGAGATTGGATCAACTTCGACTAATAGGAATGCAAATCAAAGGAGAGAATTCGTTTGATTTGTTTGACACGAGACTTTTTTCTTCGTGCAAACCCCTTTGTCCCAGATTGATGTCCTCC--------CAAGACTCACTTGGCTCGGTATATGCGGACGCTTCACGAAGCAAACAACATAGCGTAATGAAAATAACGCCCGACCACCGTTGCATGTCTAACCCTG-AAATAA---------AAGATCATGGAAGTGGGt----ggaac---------acaaaaaaatt---------------agaaaaacaaaa-----------------------ggaacgaagaa------------------tgaaaacgcaacaa---aaacaacgaatctggaaaGACCCCCAAGGATTATAG--AAATCTTA---TCTTCGTATCCTTTTAA
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   219887 340 -  4500979 AGATTCAATTAAGAGATTGGATCAACTTTGACAAATGGGA--GCAAATCAAGACA---------------TTGTCTAACACGagactctt----------------cttttttgcagatttaTGTCCTTTCTCTTTGACTGAACTTACTTGGTTCGGTATATGCGAGCGCTCCACGAAGCAGACAACATAGCGTAATGAGAAGAACGCCCGACCACCGTTGCATGTCTAACCCTG-TAAATG---------tttataattgaaatgaattttaaGAACTATATGTTTTcaagcaaaga---------------aaaaaaaaaaga-----------------------gaaaaaaacaaac-------------ttctgaaaatgctaTACCCTATGGAATCAGTCTCGAA--------------TATAG--AAA----------TTCATATCTTTCTAA
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold629   323370 359 - 33334924 AAATTCAATTAAGAGATTGGATCAGcagtgaaaaatgaga--gcaAATCAAGGCT---------------CTGTTTAACACGAGGCTCCCACTTCccaac------ttttctctttgttttatGG-------------ATGAACTTACTTGGTTCGGTATATGCGAGCGCTCCACGAAGCAAACAACATAGCGTAATGAGGAGAACGCTCGACCACCGTTGCATGTCTaaccctg---aaaa---------atcattgtttAACTGTaa----ggaat---------tgaaaagaaga---------------agaagaaaaaaagggagcaaaaagtcaaagacaacaaaataacaaaatgacgaaaaacatattctgaaaatggtttCC-CTATGGAGTCAGATTtaaa--------------tatagaaaaa----------ctcgtatcttttcta
i caeSp111.Scaffold629  C 0 I 37
s caePb3.Scfld02_0      1362687 332 +  4147112 AAATCCAATTAAGAGATTGGATCAGCAATAAAACATGGAA--GCGAATCAAGACT---------------TTGGTTTACATTTGATTGTCTTTTGCACAC------TCTTGGA--AGTTTTATGG-------------TTCAACTTACTTGGTTCGGTATATGCGAGCGCTCCACGAAGCAAACAACATAGCGTAATGAGAAGAACGCTCGACCACCGTTGCATGTCTAACCCTGTAAATAA---------GCTGTAATTGAACTGTag----ag-----------------agaagt---------------agaagaacgaag--------------aaatatgacggaagaaaaaagag----aaaacaagttttgaaaatgttatcc-CAATGGAATTAGTCTTAAA--------------TATAG--AAG----------CCCATATCTTTCTTG
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17545   15737 308 +   227596 AAACCCAATTAGAAGATTGGA--------ATCAAGCGAGA---------AAGATT---------------TT----------------------------------CGCTATTCTA--TTTAT---------------CTGAACTTACTTGGTTCGGTGTATGCGGACAATCCCTGAAGTGAACAACATAGTGCAATGAGAAGAACGCCCAACCACCGTTGCATGTCTAACCCTGGAAATGAGttgattttgtttttattaatgTTTTT----ATTAA------CGGCAAAAAGAAGTGTCATcgcattccaaaaaaaaacaaaa----------------------caaaacaaaatagaa--------------ttgaaaa----gaat-tgaaagaaaagaaaaaaaa--------------aagaa--aag--acaaatttcaaaagttttccCCA
i caeJap4.Scaffold17545 I 128 C 0

a score=-4221.000000
s ce10.chrX             3014388 15 + 17718866 -AAGAA--------CGA------CATCCCA
s caeRem4.Crem_Contig0   220257 23 -  4500979 -AAACATGTCCTACTTC------AATATCT
i caeRem4.Crem_Contig0  I 30 I 7
s caeSp111.Scaffold629   323766 15 - 33334924 -AAGTA--------CTG------AGTACGT
i caeSp111.Scaffold629  I 37 I 4
s caePb3.Scfld02_0      1363061 17 +  4147112 -aggTA--------TTGAA----AATATCT
i caePb3.Scfld02_0      I 42 I 4
s caeJap4.Scaffold17545   16045 22 +   227596 GAGGAA--------TTAAAAGGGAAACTCA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8066709 51 + 21540570 I

a score=26440.000000
s ce10.chrX             3014403 191 + 17718866 TCAAATGACACTCGCTA------------------AAAAGTAAACG-----------------------------------------------------AACATTTTTA------------GGAAGATACGAAGAAGGAAGAAGTCACACCAGATCCTGGATTCCCCGCCTTTTCTCGTTACCGTAGAAGGTGAAGCAATGAAAAGTGACACGCTGACATCTTGACGTGGCTC------------ATGGGTCGAGGGGAAGAAGCTGAGGAACTCGGGGTGTGTG--------G
s cb4.chrX              8066760 181 + 21540570 CTATTGAAAG--TAATA------------CATGTCTACATT--GCG-----------------------------------------------------AACGTCTTCA------------AAGAATgataaaaaaggaagaa---------------gatcTCTCCGCCTATTCACGTTACCGTA------GAAGCAATCAAGAGTGACAAGCTGACATCTTGACGTGGTATGGATTctaggagagagagagagagagaggaagcGCAAAACTCGA---AATTC--------G
i cb4.chrX              I 51 I 57
s caeRem4.Crem_Contig0   220287 180 -  4500979 CTATGTGATGCTCACTA------------AATGTCGAAG----GCG-----------------------------------------------------AACATTCTGAGTAGgt------aaaaggagagaagaaggaagaag--tcacccgattccggattccccGCCTTTTTTCGTTACCGTA------GAAGCAATCAAGAGTGACACGCTGACATCTTGACGTGGCTCGAGCT-----------------------AAGGCTAAGGATTCGGTGTGGTTT--------G
i caeRem4.Crem_Contig0  I 7 I 6
s caeSp111.Scaffold629   323785 176 - 33334924 -----------TCACTT-------CTTGATATTCACAAGATAAGTG--AAgca---------------------------------------------aaacattttgaaaaggtagaggagaaaataaaaaaggtggaaaaaG----------TTCCGAATACCACGCCTATTCGCTTTACCGTA------GAAGCAATCAAGAGTGACACGCTGACATCTTGAAGTGGATT-----------------------------CGTCGCAAGACTCAATGTGTCTT--------G
i caeSp111.Scaffold629  I 4 I 5
s caePb3.Scfld02_0      1363082 180 +  4147112 -----------TCACtc------------tgtatgaaaaaaaaacg-----------------------------------------------------aacattcTGAGAaggt-----aaaaagaaaagaaggaggaagaagaagtcacCGATTCCGAATTCTCCGCCTATTCACGTTACCGTC------GAAGCAATCAAGAGTGACACGCTGACATCTTGACGTGGCTTAG--------------------------CCATTACAAG-TTGGGTGTGGCTTCGGGTAAGG
i caePb3.Scfld02_0      I 4 I 5
s caeJap4.Scaffold17545   16067 241 +   227596 -TATCTTGGATTTGCTACAGGATGCGTGCGATCCGAAAAACACATATCAAGTAATTCCCGACTCTCATTCTCACGCCGCCTGCTCTCAAAGTCAATTTAAACGTTCTGA-----------AACGGAAAACGTTGGTGGGGCACGACTCCTCCGTTTC--GATTCTCCGCCTATTCGCGTTACCGTA------GAAGCAATCAAGAGTGACACGTTGACATATTGACGTTGTCGGGAA------------------------GGATTCCGAGATCTAGCGGCGCTT---------
i caeJap4.Scaffold17545 C 0 C 0

a score=4803.000000
s ce10.chrX             3014594 44 + 17718866 --TTTTGC--GGAAACGCGTGTAC---AAGGTATTCGAAACACCCCCCCCC
s caeRem4.Crem_Contig0   220473 45 -  4500979 --TCTCGA--CGAAACTTGTGTACGTTGAGGTAGTCC--TCTTTCTTTCCC
i caeRem4.Crem_Contig0  I 6 I 4
s caeSp111.Scaffold629   323966 42 - 33334924 --TTCCGA--TGAAACTTGTGTACGGGAAGGTAACCC-----TCCTTTTCC
i caeSp111.Scaffold629  I 5 I 4
s caePb3.Scfld02_0      1363267 40 +  4147112 -------A--CGAAACTTGTGTACGAGAAGGTAGTCC--CTTCCCTTTTCC
i caePb3.Scfld02_0      I 5 I 4
s caeJap4.Scaffold17545   16308 34 +   227596 CCTTGCGACTCGAAACTTGTGTAC---GCGGCCGGCG--------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8066941 57 + 21540570 I

a score=48124.000000
s ce10.chrX             3014638  98 + 17718866 CTTATTT-GAAAATAGTGTCATC-GGTGAGTGGCACATTTATCTAATGAGATTT-CACTCA---------------------------------------TGTCACTTCCTA--------GGCGGGAAAT-TCAAAAGTTCGAAAACAA
s cb4.chrX              8066998 115 + 21540570 tttatttggaaaatagTGTCATCGGGTGAGTGGCACATTTATCTAATGAGATTCGTGACCATCAA---------------GAGG----------------AGTCACTACTGACTTCCGAGGGcgcgaaaa-tcggaaatttgaaaaa--
i cb4.chrX              I 57 C 0
s caeRem4.Crem_Contig0   220522 111 -  4500979 cttattt-gaaaatagtgtCATC-GGTGAGTGGCACATTAATCTAATGAGATTC-CGCCCATCAAATTTC---------GAGAG----------------AGT---TTCTGCCTC-----GGCgggaaaattcggaaatttgaaaaa--
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   324012 133 - 33334924 cttattt-gaaaatagtgtCAGC-GGTGAGTGGCACATCTATTTAATGAGATTC-GGTCCATCAAATTCC--GAgttgaagaaggagaagaaaaaagataagtCA-GTTTG---------GGCGGGAAac-ttggaaatttgaaaacgt
i caeSp111.Scaffold629  I 4 I 11
s caePb3.Scfld02_0      1363311 120 +  4147112 cttattt-gaaaatagtGTCACT-GGTGAGTGGCACATCTATCTAATGAGATTT-GGTCCATCAAATTTCAAGAGTTGAGGGAG----------------AGTCA-CTCGGA--------GGcgggaaac-ttgaaaatttgaaaacag
i caePb3.Scfld02_0      I 4 I 21
s caeJap4.Scaffold17545   16342  94 +   227596 GTAAGTT-GAAAATAGTGTCAGC-GGTGAGTGGCACATTTATCTAATGAGGTTT-GGGTCATCACATCAC------------------------------CGC---ACCGCAC-------GACacgaaac-taaacga-----------
i caeJap4.Scaffold17545 C 0 C 0

a score=-7489.000000
s ce10.chrX             3014736 20 + 17718866 -----ATCG-AAATTTTG-----AATTACTA
s cb4.chrX              8067113 21 + 21540570 ----------agcgaTAGCTGACAAGGACCA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   220633 16 -  4500979 ----------acagagTG-----AAGCACCA
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   324156 15 - 33334924 -----AAC--AAAGATAG-----GAGT----
i caeSp111.Scaffold629  I 11 C 0
s caeJap4.Scaffold17545   16436 20 +   227596 aacgaaacgaaaagaaag-----ta------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1363431 21 +  4147112 I

a score=60438.000000
s ce10.chrX             3014756 439 + 17718866  
s cb4.chrX              8067146 431 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   220657 475 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   324171 476 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1363452 467 +  4147112  
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17545   16456 433 +   227596  
i caeJap4.Scaffold17545 C 0 I 1306

a score=7099.000000
s ce10.chrX             3015195 22 + 17718866 CGGAGTTTATCTGCACAGGTTG
s cb4.chrX              8067577 18 + 21540570 GAAA----GGCTGCACAGGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   221132 18 -  4500979 GAGA----CGCTGCACAGGTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   324647 19 - 33334924 TATC---TTGCTGCACAGGTTG
i caeSp111.Scaffold629  C 0 I 20
s caePb3.Scfld02_0      1363919 18 +  4147112 TATA----CGCTGCACAGGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I

a score=-2128.000000
s ce10.chrX             3015217 25 + 17718866 ---------------------TGGCGCAG--CTAACGAAAAGAAGATT
s cb4.chrX              8067595 30 + 21540570 A-----------------TTTAGAGGTCTTGCTAACA-AAATTGGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   221150 48 -  4500979 GGGGTCgaccctctttttttttggcggATTGCTAAcagaaaatagatt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1363937 27 +  4147112 -----------------GTTTAGGTCGAC--CTAACAGAAAATAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   324666 20 - 33334924 I

a score=44593.000000
s ce10.chrX             3015242 197 + 17718866 ATCTT--------TTTTTTCCTAAATTCTCAGCGCACGTAACACACACGTC----GTGTCATCGTCGAATCTCATTTCGGGGGTAGATTTCAAATAGATTGGCTGGTTTCCACTCAATTTAAAGA------GGGTCAAGCCCACGCGTTGATTGAGGGAAGACT--ACAACATCTACTTGAGCTGAGTCAAATAACAC-GAACCCGCCAAAACACAAC
s cb4.chrX              8067625 160 + 21540570 ATCCCGCCGA---TTTCCCCCTAAAC------------------GCACGTCTTCAGTGTCA---TCAATTTTCGTGTAGAAG---------GAATA----GGTTGGGTTATACTCAATTTGAAGAT-------GGATTGCCCACGCCTTGATTGAGAATAAAAAAGCCTACACATACTT----------GAACCGCTTCGAG----ACAAAATACAAA
i cb4.chrX              C 0 I 377
s caeRem4.Crem_Contig0   221198 163 -  4500979 ttcttCCTGAAATTTTGCTACGAAAT------------------GCACGTT----GTGTCA---TCAAATCTCATTTCAGGAT----TGTCAAATA----GGTTGGTTTCCACTCAATTTAAAGACAAGGAGGGCGTAGCCCACGC---GATTGAGGGGAAA----CCTAGACCTACTT----------ATATAACGT-GAA----CCAAAATACAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   324686 162 - 33334924 ----------ATCtccttttgaaaat------------------gcaCGTC----GTGTCA---TCGAATCTCATTTCGGGT-----TGTTGAATA----GGTTGGTTTCCActcaatttaaaaacaagGAGGGGGATGCCCACGCGATGATTGAAGAAAA-----CCTTCACCTACTTGAGCCGAG--ATAGAACTC-AAA----CCAAAATACAAA
i caeSp111.Scaffold629  I 20 C 0
s caePb3.Scfld02_0      1363964 159 +  4147112 ---------------TTTTGGGAATT------------------GCACGTC----GTGTCA---TCAAATCTTATTTCGGGT-----TTTCAAATA----GGTTGACTACCACTCAATTTAAAAACAAGGAGGGAAAAGCCCACGCGAAGATTGAGGAAAA-----ACTACACCTACTTGAGCCAAGTCATATAACTT-GAA----CCAAAATACAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I

a score=726.000000
s ce10.chrX             3015439 2 + 17718866 TA
s caeRem4.Crem_Contig0   221361 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 I 349
s caeSp111.Scaffold629   324848 2 - 33334924 CA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1364123 2 +  4147112 TA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8067785 377 + 21540570 I

a score=456.000000
s ce10.chrX             3015441 4 + 17718866 CAAC
s caeSp111.Scaffold629   324850 4 - 33334924 CTAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1364125 4 +  4147112 CAAC
i caePb3.Scfld02_0      C 0 I 412
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8067785 377 + 21540570 I
e caeRem4.Crem_Contig0   221363 349 -  4500979 I

a score=91.000000
s ce10.chrX             3015445 1 + 17718866 A
s caeSp111.Scaffold629   324854 1 - 33334924 A
i caeSp111.Scaffold629  C 0 I 373
e caePb3.Scfld02_0      1364129 412 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8067785 377 + 21540570 I
e caeRem4.Crem_Contig0   221363 349 -  4500979 I

a score=0.000000
s ce10.chrX             3015446 783 + 17718866  
e caePb3.Scfld02_0      1364129 412 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8067785 377 + 21540570 I
e caeSp111.Scaffold629   324855 373 - 33334924 I
e caeRem4.Crem_Contig0   221363 349 -  4500979 I

a score=100.000000
s ce10.chrX             3016229 59 + 17718866 ACAATATATGTTCGACAAAAATACTACAACTATATTGTAAA--AATAGAAATTCATTTGGT--
s caeRem4.Crem_Contig0   221712 58 -  4500979 ATACTATTTGAATGACGAAACTGCTAC-----TATTTGAAGTCAAGAAAAACTTAAGAGATCC
i caeRem4.Crem_Contig0  I 349 C 0
e caePb3.Scfld02_0      1364129 412 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8067785 377 + 21540570 I
e caeSp111.Scaffold629   324855 373 - 33334924 I

a score=602.000000
s ce10.chrX             3016288 3 + 17718866 GAT
s cb4.chrX              8068162 3 + 21540570 GGT
i cb4.chrX              I 377 C 0
s caeRem4.Crem_Contig0   221770 3 -  4500979 GAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1364129 412 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   324855 373 - 33334924 I

a score=20866.000000
s ce10.chrX             3016291 123 + 17718866 GTGATGACTGTCAGGAAATGA---GTCGAAGCGTGATGT--------AGGATTTTT--GTGA--------TGTGGAAAACAAGGAAATTTAAGAAGGATAC--TGGAACAAACTGACA-------GGAAGTTCATCATTTTTTCAGATGTCTT------------------
s cb4.chrX              8068165 115 + 21540570 GTGATGACTGTCAGGAAATGA---GTCGAAGTTTGATGCGtc--------gttttgaagaaaaacaggCCCGCGTGTTAAAAAAGTGACTGG-------------AAGTAGAGTGACA-------GGAAGTTTGtgattt---caaa----tc------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   221773 116 -  4500979 CTGCTGACTGTCAGGAAATGA---GTCGAAGTTTGATGCGTCGT---AGAGTTTTGTGTTGA--------TGtggatgaaaaaaacaacaaaa------ac----aactaAAGTGACA-------GGAAGTTTATCATTT---CAAA---CTC------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   325228 131 - 33334924 GTGATGACTGTCAGGAAATGAGACGGCGAAGTTTGATGCGTCTTCcgagatttttttgttga--------tatgaaaaacaaggaaagcGTGT---CTTAC--TGGAACAAACTGACA-------GGATGTCTAtgattt-----------tcagc---------tatttt
i caeSp111.Scaffold629  I 373 I 203
s caePb3.Scfld02_0      1364541 146 +  4147112 GTGATGACTGTCAGGAAATGA---GTCGAAGTTTGATGCGTCGTCGAAGCGTTTTTTGTTGA--------Tgtcgaaaacaagaaaaacttga---gCGACGGCGGAATGAAGTGACAGGAATCTGgattttggtgattt-----------tctATCGCATAGTAcatttt
i caePb3.Scfld02_0      I 412 I 7
e caeJap4.Scaffold17545   16889 1306 +   227596 I

a score=2071.000000
s ce10.chrX             3016414 28 + 17718866 ATTTTTGTTTATAAGGTTTTTTTTGTGA--
s cb4.chrX              8068280 28 + 21540570 atttttggTCTCCcagtgaaatttttga--
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   221889 28 -  4500979 ATTCTTGGTCTACCAGTTCATTTTGTGA--
i caeRem4.Crem_Contig0  C 0 I 247
s caePb3.Scfld02_0      1364694 30 +  4147112 ttttatgttttttccactttttttatGCTC
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   325359 203 - 33334924 I

a score=1976.000000
s ce10.chrX             3016442 14 + 17718866 AAAGCAAGAGTCCA
s cb4.chrX              8068328 14 + 21540570 AAAGTAATGGTTCA
i cb4.chrX              I 20 C 0
s caePb3.Scfld02_0      1364724 14 +  4147112 AAGACAAGTGTTCA
i caePb3.Scfld02_0      C 0 I 151
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   325359 203 - 33334924 I
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=128.000000
s ce10.chrX             3016456 5 + 17718866 AGATT
s cb4.chrX              8068342 5 + 21540570 ATACT
i cb4.chrX              C 0 I 529
e caePb3.Scfld02_0      1364738 151 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   325359 203 - 33334924 I
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=0.000000
s ce10.chrX             3016461 692 + 17718866  
e caePb3.Scfld02_0      1364738 151 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8068347 529 + 21540570 I
e caeSp111.Scaffold629   325359 203 - 33334924 I
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=564.000000
s ce10.chrX             3017153 6 + 17718866 TCTTAC
s cb4.chrX              8068876 6 + 21540570 tctTAC
i cb4.chrX              I 529 C 0
e caePb3.Scfld02_0      1364738 151 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeSp111.Scaffold629   325359 203 - 33334924 I
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=-457.000000
s ce10.chrX             3017159 49 + 17718866 AGAACC-AAAAAGTAACATCATATTTAGAATTT----CTACTCGTAAGCACTGA-
s cb4.chrX              8068882 53 + 21540570 --AATGTTAAAAATTATGTCATGTCTAGATCCGACCTCTATGTGTATATAAATAC
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold629   325562 32 - 33334924 agaatG-GAAACACCATGTCATGTCTAGAGTCT----------------------
i caeSp111.Scaffold629  I 203 C 0
e caePb3.Scfld02_0      1364738 151 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=0.000000
s ce10.chrX             3017208 2 + 17718866 AC
e caePb3.Scfld02_0      1364738 151 +  4147112 I
e caeJap4.Scaffold17545   16889 1306 +   227596 I
e cb4.chrX              8068935 2 + 21540570 I
e caeSp111.Scaffold629   325594 0 - 33334924 C
e caeRem4.Crem_Contig0   221917 247 -  4500979 I

a score=28789.000000
s ce10.chrX             3017210 62 + 17718866 AAATCAGAT---CAAATTGAACGTGACGCCTACG---ACCTCATTCATCGGCGTTGAAATCAGATGTG
s cb4.chrX              8068937 59 + 21540570 ATATGCGAT---CAAATTAGACGTGACACCCCCGCCCTCCTCGTTCT------TTCAAATCAGATGTC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   222164 56 -  4500979 AAATAAGAT---CAAATTAGACGTGACACCCACG---TCCTTGTTCA------TTGAAATCAGATGTC
i caeRem4.Crem_Contig0  I 247 C 0
s caeSp111.Scaffold629   325594 56 - 33334924 AACTCTGAT---CCAATTGGATATGACACCCCCG---CCCTAGTTCA------TTGAAATCAGATGTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1364889 59 +  4147112 AAATAAGATAAAATAATTCGATGTGACACCCCCG---CCCTCGTTCA------TTGAAATCAGATGTC
i caePb3.Scfld02_0      I 151 C 0
e caeJap4.Scaffold17545   16889 1306 +   227596 I

a score=35116.000000
s ce10.chrX             3017272 34 + 17718866 CTTAACTAAATCATATTCT-GCTCAACAAACATCA
s cb4.chrX              8068996 31 + 21540570 CTCAACTAAATAATATTCT-GCT---CAAACATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   222220 32 -  4500979 CTTAACTAAATCATATTCTCGCT---CAAACATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   325650 31 - 33334924 CTTAACTAAATCATATTCC-GCT---CAAACATCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1364948 31 +  4147112 CTTAACTAAATCATATTCT-GCT---CAAACATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   18195 31 +   227596 CTTAACCAAATCATATTCG-GCT---CAAACATCA
i caeJap4.Scaffold17545 I 1306 I 797

a score=40137.000000
s ce10.chrX             3017306 126 + 17718866 AAAAGAGA-AATAAATAACTTCTTTAGTTTCTTTTTTCGGACCAACCTTCTTCTCGTGGGT---------GT---CTCATTTTT-CTATTGA-CTTGGTTTCGAAAGA----GAACTTGGTGTTTGGAAAC---TTAATGATTACATT
s cb4.chrX              8069027 130 + 21540570 GACGAAGGCAATAAATAGAA-----GATTCCTTTTTCCGGT-------CTTCCTCGTGGGAACCACaaatgt---ctcattttctcCATCAAgtaaaagttcgaaaaacatGGAACTTGGTGCTCGGAAGTGTCTAGGTAACACT---
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   222252 128 -  4500979 TGCCGAGG-AATAAATAGca--ttcagtttctttttccgGTGAAA---TCTTCTCGTGGGA---GAGAAAGT---CTCATTTTC-CCATTAA-CAAAGGTTCGAAAAACATGGAACTTGGTGCTCGGAAGT---TAtgtgaaatt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   325681 127 - 33334924 T-CGAGAG-AATAAATAGCt--ctcagtttctttttccggAAGAA---TCTTCTCGTGGGA---AGAAGGggtctctcattttc-tcatt-----agGGTTCGTAAACCATGGAACTTGGTGCTCGGAAGC---TAGGTGATTTCA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1364979 128 +  4147112 T-CGGAGA-AATAAATAGCa--ttgagtttctttttccgGTGGAA---TCTTCTCGTGGGA---AAAAAGGA---CTCATTTTC-CCATTAA-CAAAGGTTCGAAAAACATGGAACTTGGTGTTCGGAAAC---TAGGTGATCCTA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=-4255.000000
s ce10.chrX             3017432 14 + 17718866 CTCGAATTTTCGAG-------
s caeRem4.Crem_Contig0   222380 11 -  4500979 ----------ggaaaagtttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   325808  4 - 33334924 ------------ACAT-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1365107  4 +  4147112 ------------AAAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I
e cb4.chrX              8069157 19 + 21540570 I

a score=102453.000000
s ce10.chrX             3017446 411 + 17718866 TTCACGTGAATTCG-CGTCAGATCGCATTTTTTCACTCATTTTCAACTAAATGACGCCGGAATATCGAC----------GGAAATAGATTGAA--------AAGGAAGAACCTGTCAACACGTAGGCTCTACGAGACCTGCAGCGTTTCGGTGTCTTA--GAATTTGT-TGAAATTGGATTAGAAACTGAGTTGAGTCCTC-TCTTAATACT-------------GAGTTCCGCG-----CTACCTACATCACTGAA-------ATCTAGTCAGTTGA--ATTGAGCCAATTGAATTGGAGAGAATAACGAGAATTTTAGGCGCAAAGTCTGGGGAAT-TCCAAAGAAAA-AACTTTAGGGA---GTGGTGGAACATGAATTATG-----AGCAGGATATGGTACTTGTAGCTC-AAAAATGGCAATTATTGCTCT----------TGGAAAT---GTCTTTTGAGATCAAAAATG--------CTCGAGGAA--
s cb4.chrX              8069176 426 + 21540570 TTCACGTGAATTCA----CGGATCGTATGCGT-------CTTTTAAGTAAATgacg-cgaaattcgaatttcaaggtCCCAAAATAGATTGGAAACGT---AAGGAAGAACCTGTCAACACGTCGTCC------------CAGT-TTTCGATGTCTTAGCGAATTTCG-CGAAATTGTATTAGCT--------------TG--CCAAATGAA-------ACTTGAGGGTTCTTCCTCTTACTACCTACATCGACGCAATGG---GGCTCTTTCGttagaaattggctcaattcgattt--taaaaagaagagaaagtttG--GAGAGAGAAGGAAAAT-CCGAGGAAGAA-CAACGCGCGGGTAAAATGTATAACATAAATTATGGATTTAAATGGTTATGGTagttcaagttttcaaaaatgatgtgatgcagcttttcaaaaacgactctcaaaatttttgaagaacgaGAATA---TGTTTTTCGAG-----
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   222391 414 -  4500979 ---aCGTGAATTTATCGGTGGATCGTATGCTTT-----ATTTTCAAGTAAATGACG-CGAAATTCAGAT----------AAAAATAGATTGAAAACGTAGCAAGGAAGAACCTGTCAACACGTCGTCT---CGAAactagcagt-tttcgatgtcTTA--GAAGTCAG-TGAAATTGTATTAGTT----GTTTGAGTACTC--CCCAATAGGCT--TCTACGTAAGGGTTCCTCCT----TTACCTACATCAACGCAATGC---CTCTTCTTGTTTAG--ATTGGGCCAATTCAATTT--AGAAAAGACGAGAAGTTTGA--Aggaatttcgaagaat-ttgAGAAACCA-AACTGAAGGGA------GTGAGACATAAATTATG-----AACAGGATATGGTACTTGTGGGTTTGAAAATGGCAATTATTCGgtt----------ggttctt----tttttcgagatCAAAAATGGCTCGTTTTGCG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   325812 414 - 33334924 TTCACGTGAATACC-CGTAAGATCGTATGCTTT-----TCTCCAAAGTAAATGACG-CCGAATGAAGAC----------GAAAATAGATTGGCAACGTAAGAAGGAAGAACCTGTCAACACGTCGTCT---CAAAACTAGCAGT-TTTCGATGTCTTA--GAATTTAG-TGAAATTGTATTAGCAAGTAGTTTGAGTACTCAGCCCAAAAGCCTAGCCTACGTATGGGTTGTTCGT----CTACCTACATTGATGCGAAAC---Cttattttgtttga--attACTTCAATTCGATTT--ACCAATGACGAgacttttcga-gaaaatttcaaagaaactaGAAGAAGCTGAGCTAAAGGGA--------AGCACATAAATTATA-----AACAGGATATGGTACTTGTGGTTCTGAATATGGCAATTATTGTTTT----------GGCATCT---GCTCTTTGAGATCAAAAATG-------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1365111 428 +  4147112 TTCACGTGAAGTTC-TGTTAGATCGTAtgcttt----attttcaaagtaaatGACG-CCGAATGAAGCC----------GAAAATAGATTGAAAACGTAGCAAGGAAGAACCTGTCAACACGTCGTCT---CGAAACTCGCAGT-TTTCGATGTCTTA--GAATTTAGTTGAAATTGTATTAGCAAGTGGTTTGAGTACTC--CTCAATGGCATTTTCAACGTAAGGGTTCTC--T----CTACCTACATCGACGACTCACTGGCATATCTTGTTTGG--ATTACCCCAATTGGATTT--GGAAATGACGAGAAAAGTTG--GAGAATTTCGAACAAA-TGGAGGA-----AGCTAAAGGGA------GTAACACATAAATTATG-----AACAGGACATGGTACTTG-GGTTTGGAATATGGCGATTATTATGCT----------GGTTAGT---GCTCTTTGAGATCAGAAATGGCtctttttgttcgaaaaa
i caePb3.Scfld02_0      C 0 I 141
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=-14986.000000
s ce10.chrX             3017857 111 + 17718866 CTACAACTAGAA-------GCATAATTTTTGAGCGATGGTGTCCATTATGTTCGCGCTTCTTGTGCACTTCGATATTAAAACAACTGAAATGTAAAAAT--------TGAAC--AG--TGGAATTTTTAA---
s cb4.chrX              8069602 110 + 21540570 -CACAGGAAAAGTACGAGCGCAAAATTCTTCCG----GGTGTCTATTGTATTCA------------GCAAAGAACCTAACACGA---AAATATAAGCATTTTGTAGTAGGACCTAGctcgaaactttttg---
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   222805  59 -  4500979 -------------------GAACAAGTTTTCAA----GGC-------------------------------GAATGAAACGGAA---GAATGTGA------------AGAATCGGG--TGCAAGTTTTTG---
i caeRem4.Crem_Contig0  C 0 I 105
s caeSp111.Scaffold629   326226  35 - 33334924 -------------------GCTCGTTTCTT-----------------------------------------------------------------------------TGGAACaag--gaaaagtttttttaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1365539 141 +  4147112 I
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=-1732.000000
s ce10.chrX             3017968 33 + 17718866 CAAAGAGTAATACTGATCAAGATAAATTGGATG------
s cb4.chrX              8069725 30 + 21540570 tcaa----aattttga-----acaaaataaatatttttg
i cb4.chrX              I 13 C 0
s caeSp111.Scaffold629   326261 20 - 33334924 --------aacgcCAT-----ATAAACCGGAAG------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1365539 141 +  4147112 I
e caeJap4.Scaffold17545   18226 797 +   227596 I
e caeRem4.Crem_Contig0   222864 105 -  4500979 I

a score=-15277.000000
s ce10.chrX             3018001  93 + 17718866 --------AAATAATTAAATGAAATGAAATGGCAAGTATGTAAATTTTTTATTACTATAGCATGTA-AGATTATTTT--------------GCAATCGGT-----AAATTTTAGCGCAATG----
s cb4.chrX              8069755 114 + 21540570 atctcactgaaaaaaaagtagaca-AGTATAATTTTTCCGGGAACAATAAGTCATCAAAAGGAGAACAACTATTTTC-------CTAGGAAATGGACTATGC---AAATTCAATAACAATTGAGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   326281  60 - 33334924 ------------AAT--------------TTAGAGGATCGGGTGCAAGATTTGA-------------AGCTCATTTC--------------ACGAAA--------AAAGtcgagaaaaatg----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1365680 105 +  4147112 --------GAGCAATTATCTGAAA-GACATGAGAAGTGTGTAAGCAAAACACAGT-------GgcatagtttttttctgatatttttgaatgcgAACCATGTTATAGAATTGATTGACATA----
i caePb3.Scfld02_0      I 141 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I
e caeRem4.Crem_Contig0   222864 105 -  4500979 I

a score=-90293.000000
s ce10.chrX             3018094 275 + 17718866 CGGAAGGAATTCAGCAAGGTACTGTAAGTCTTTTTCGAATAACGACTGA------------------------------------------ATAAAAATTTAAAAAAAAAGACAAATATTT---------------------------TCTTATAACGGTGGTGTGTAAGTTTTGCAAAAATGCCGA-------------AA-----ATAATAGCCGCACTGCACTGCAGCTGCACTGAATTTTC------------ATTTTTAAAATGC--AGATTTTAA-----GTGCAAGTCA---AAATTGACGTACTAGAAAAAATAAGGTAATTTAATTGAGTTTC------------T-TTT-CTATTTTTTTTTTTCAAAATTCGTCATATTTTGGAAAT--------------------------------------------------------------------
s cb4.chrX              8069869 415 + 21540570 AAGAAAGAATTTCCAAGATTTG---AAACCATGTT-------AGACTGGAAGGGAGTGTGTTCATGGAAATTTGAGGTaggtctaaaaaatttgaaaaat--aaaacagacaaagaaatcaaaaaagccGCTTTCgcattacatttttttttacgTTGGA---ccttattttttgtctgaCTAGTGACAAAAACCAGCAGAAAATGTACAAAACTCTGAAT-TACGGTAGCAG--AATtactttcaatttcaatttaggTTACGATAGCT--AAACTTCAATTATGATTTGGGTTACGGTAACTAAGCCACAAGAGAAAATGCGG----------GAGCTTCCGATCAGGGGTGT-GCG-GAATGAAacgtttt-ggaattttgtaatttatgATTAtttcaagttaaaaaaaatt-----tggatt-------ttcagaaagtttcaaaaattctgaat------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   222969 211 -  4500979 CTGTGGGAAACCTACAGGTTAT---AAACTTTCTT---------ACTAG----------------------TTG-----------------TTGACATAT--AAtatatcaataaaaatca---------------------------tttta------------------tttaGAGAACTGCTAAAATAGTCCCgaagaa-----atataattttaaat-CACCGCTGGAGTTGATAACTTTCAGCACC------TGTTAACATAacc--aaatataaa-----aattgtatta----------------------------------------------------------t-gta-ttatgaa----------aacatttcagtctATGCATAT--------------------------------------------------------------------
i caeRem4.Crem_Contig0  I 105 I 23
s caeSp111.Scaffold629   326341 241 - 33334924 ----aggatt---------------AAATTGGTT-----------CTGA------------------------------------------GAGGCAATG--GAAACCAGGAACTATTTCT---------------------------TTCCAGATCGGAAGTTCTTACGTTTCGGAGA---------------------AA-----ATACTATGCAgata-caagaaaa-----aatag-----------------agtgagacaaatcaaaaactctaa-----aaattgtttt----------------------------------------------------------tgatgtctgttacaa--------aataaaatagtttttgccTCT----CgataattaaatttcaaaatgggtATAGCGCATTCTATTATGATCAGAAATTGtaacaagaaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1365785 203 +  4147112 ----AGGTTTTCTGAATGGTATTTGGAACTACTTT---------GCCGG------------------------------------------AGGGCAACC--AAAACATAGGAGAATATGA---------------------------TTACGGGTTGTAAGTTGTTATCCTTAAATGAGTTGGCTGTTTATCTCATTATGA-----CTGTTTCCTAGATT-CACGAA-------------------------------TCATACAAACC--ATGTTCGAA-----ATGCTGGTTT----------------------------------------------------------T-ATa-ctatttc-----------------tagttttt-----------------------------tgggtA----GCATGCCgc-------------------------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=-6670.000000
s ce10.chrX             3018369 32 + 17718866 -----GAAT-----TGCATGTTTTTCAAACCTACCTCC------GATT--------
s cb4.chrX              8070284 48 + 21540570 gatTGTAATTCCTGATTCTTTCTGTTTAACTGAGTTTTATGGCcgaat--------
i cb4.chrX              C 0 I 25
s caeSp111.Scaffold629   326582 27 - 33334924 -----caat-----attACGTTTGT-------------------GAAAAACCAACC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1365988 22 +  4147112 -----aaat-----attattttcca-------------------gaatcac-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I
e caeRem4.Crem_Contig0   223180 23 -  4500979 I

a score=8667.000000
s ce10.chrX             3018401 68 + 17718866 --CGAGCAGTATGTGACAGATTTGTTTTAGCTCA--AAAATTGACGCTCTAGC---------ACTAGTGTTC-CGTGTTTTG-------------
s cb4.chrX              8070357 79 + 21540570 --CGAAGGTCAGATGACAAATCTGTTCTAGCTCAAAAAGATTGACGACGTTCTTTCC--CGAATCGCCgcat-tacattttt-----------tt
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   223203 92 -  4500979 --CGAAGGTCAAATGACAGATTAGTTCTAGCTCAAAAAGATTGACGACTTGCTTTCCGACGAACGGCCATAT-TATATTTTCGGCCGCCCTAGTT
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold629   326609 72 - 33334924 AGAGAAGGTCAGATGATGGATATGTTTTAGAGCAGTAAGATTGACGGCGTTGTGTTGTG---ACTCCTG-------GTTTTG-------------
i caeSp111.Scaffold629  C 0 I 48
s caePb3.Scfld02_0      1366010 81 +  4147112 -aAGAAGGTCAGATGACTGATTTGTTTTAGGTTTTCAAGATTGatgttttggttttgagaaaacaattgtGTATACATTTTG-------------
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=-3631.000000
s ce10.chrX             3018469 37 + 17718866 CTCCA-ACAAAC---TCAACAAAATTTTT-TCTTACAGTATG---
s cb4.chrX              8070436 31 + 21540570 ttcgc-ctaaG----------CCATTTTCACCTTCCATTGTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   223295 39 -  4500979 TTCACTCTAAGC---TCACAACCAATTTTATTTCCCATTGTC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1366099 42 +  4147112 TTCCG-TTAGACAGGAAGGAACCATTAT--TTTCCTATTGTTATA
i caePb3.Scfld02_0      I 8 I 13
e caeJap4.Scaffold17545   18226 797 +   227596 I
e caeSp111.Scaffold629   326681 48 - 33334924 I

a score=-1135.000000
s ce10.chrX             3018506 41 + 17718866 ----------------AAAACAA--CCCAATGCCAGAAAATGATG-----------ATTTTCGGCTGTGA
s cb4.chrX              8070467 63 + 21540570 CAAAACATGTAGGACCAAAAAGA------TTCTACAAAAACGACGCCcaagaaaaaatgacgaaCTCT-A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   223334 47 -  4500979 CGGGATTTCTA----CAAAAGGA-------TCCAAAAACACGAGG-----------ATTCTAAACTCT-A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   326729 42 - 33334924 ----------------aaaaaaacttctgCTTCTAAAAAATGACG-----------ATTCTTAACCAT-A
i caeSp111.Scaffold629  I 48 C 0
s caePb3.Scfld02_0      1366154 31 +  4147112 ----------------aaacaaa-----------aaaggatgaCG-----------ATTCTAAACTCC-A
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17545   18226 797 +   227596 I

a score=140320.000000
s ce10.chrX             3018547 231 + 17718866 AACTTAT----TGGACGCAAA-CCAAACATTAGATAAAGACAAATGTCCTAAAAGAAAAACGTATTTCATGCTTGGCCGAAATG----CATTTTTTCTGC--GGGTGGTTTTTGGCTCGGAAAGGCTCAGAATAGTGCTC---AAAAATCTGGATATGAAGATGAAACCCCCGAC--GCCGGAAAATGTTG-------ACGAGAAAAGTTGAAGTGGCAGTTGGGGACTAATTCGTTGA-----------AAAAGAAGATCCTTA
s cb4.chrX              8070530 231 + 21540570 AACGTGCATCGTTGGCGCGAGCCCAAACATTAGATAAAGACAAATGTCCTTAGAGAAAAACGTATTTCATGCTTGGCCGAAATGCCTTCTTTTTCGGTTTCTGGGCGGTTTTCGGA-------------------TGCTC---AAAAATCtggatatgaaaa--aaaacccgggg--gatagaaaatgttttgacaaaacgaaaaaagttgaagtGGCAGTTGGGGACTAATTCGTTGAA--------CAAGGAGAAGAAGGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   223381 209 -  4500979 AACGTGCGGTCCTCCCGCAAA-CCAAACATTAGATAAAGACAAATGTCCTAAAAGAAAAACGTGTTTCATGCTTGGCCGAAATG----CTTTTTCGG-----GGTAGTTTTTCGGC-------------------TGCTC---AGAAATCTGGATATGAAAA-------CCGGGGGAGATAGAAAAAGTCG---------GGAAAAAGTTGAAGTGGCAGTTGGGGACTAATTCGgtgaa--------ggaaaagaagatcCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   326771 200 - 33334924 AACGTGC----ATGCCGCAAA-CCAAACATTAGATAAAGACAAATGTCCTAAAAG-AAAACGTGTTTCATGCTTGGTCGAAATG----CTTTTTTCT-----GGGCGGTTTTCGGC-------------------TGCTC---ACAAATCTGGATATGAAAA-------CTGGGCGAGATAGAAAATGTTg-------acgaaaaaagttgaagtgCCAGTTGGGGACTGATTTGTTGA--------------AGAAGATCTTCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1366185 200 +  4147112 AACGTGC----CGAGCGCAAA-CCAAACATTAGATAAAGACAAATGTCCTAAAAGAAAAACGTGTTTCATGCTTGGTCGAAATG----CTTTTTTC------GGGTGGTTTTCGGC-------------------TGCTC---ACAAATCTGGATATGAAAA-------CTGGGCGAGATAGAAAATGTTa-------gcgaaaaaagttgaagtgcCAGTTGGGGACTAATTCGTTGA--------------AGAAGATCCtca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   19023 193 +   227596 AGCTTTT----TCATAGTAAA-TCAAACATTAGATAACGAGAAACGTGCTAAAAGAAAAACGTGTTTCATGCTTCGGCGAAA-A----CGTTTTCCA----------GCCTTTGAA-------------------AGCTCGCAAAAAATCTGGATG-GAAAA-------------------------GATG-------ACGAAAAGGGTTGAAGTGGCGGTTGGGGACTAATTCGATGTAtggaaaatagaaaagaaaaccCTCA
i caeJap4.Scaffold17545 I 797 I 4599

a score=91020.000000
s ce10.chrX             3018778 261 + 17718866 G------------ACCAACGGACAA-TGTGCAAAGTTGAGAGATAGA----TATTGAA--TGTGGGGCTTGTGTGCGAAATGTAGAG----------------------------------GTAT--------TCAAATTCAATCTTCTTTGGTCACTGAACTT---------TTTTC-CGATCAAAATTTATCC-----------TGACCTTTGAGGCAAAAGTCAAAATATAAAAATTGAATGGAAAA-CGGATATTACGTCTTGGCTCAGCCCGATCCTAGGTGTCAAAGGGTAGTCAAGCG-ATATTTGGCAACATTT--TGCTTCCGGCTTCACCAAA---CTTT
s cb4.chrX              8070761 306 + 21540570 GATGAAAAAGATCCGCGACGGACAA-AGTGCGAAGTTgagagatagatttttttcgac--tatTCCATTT-------ATGTGAAGAGGTATGTTATGTATGTCTATGTAGGTTTTGTGGGTGTGT------GGTACAATTCAATATTCTCTGATTTGTGAACTCCGCGAAAAATGGCT-CGATCAAAATTCAACC-----TCTTGGTGACCTTCGATGCAGAAGGTTGgatatgaaaattgag-aaaaagccgGATGTTACGTCTCGATT-----------------TCAAAGTGTAGTCAAGCG-AAATTCGGCAACATTTTTTCCTTCcgtttt---ggaaaatcttt
i cb4.chrX              C 0 I 1657
s caeRem4.Crem_Contig0   223590 254 -  4500979 G------------CCCAACGGACAA-AGTGCGAAGTTGAGAGATAGA--TTTGCCGAC--TATTCCATTT-------AAACGAAGAG----------------------------------GTGA------GGTACAATTCAATGTTCTTTGGTTAGTGGACTT-----ACAATAACTGCGATCAAAATTCAATTCGGGACTCAGGTGACCTTTGAGGccgaagtatgaaaatgaaaattgag-ataaaa-CGGATATTACGTCTTGATT-----------------TC-AAGTGTATTCAAGCG-AAATTTGGCCACCTTCCTTCCTTCCGTTTT---TCAA---CTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   326971 255 - 33334924 G-------------CCAACGGACAAGAGTGCCGAGTCGAGAGATGGA--TTCGCCGAA--TATCCCATTT---------GTGAAGAG----------------------------------GTGTGTGTGGGGTACAATTCAATTTACTTTGGTTACTGAACTC-----ACAGGATTT-CGATCAAAATTCAACTCGGA-TCAAGATGACCTTTGAGGCAGaagaatgaatttgaaaattgag-aaaaaa-cggatGTTACGTCTTCATT-----------------TT-AGGTGTAGTCAAGCGCAAATCTGGCAACTTTT--TCCTTCCGTTtc---tcaa---ttta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1366385 248 +  4147112 g-------------acaac--aaaaaagtgcGAAGTCGAGAGAtaga--ttttcggaattttttcatttt---------gtgaaGAG----------------------------------GTGT------GGTACAATTCAATATTCTTTGGTTAGTGAACTC-----ACAAGACTT-CgatcaaaattcagtttggC-CTTAGGTGACCTTTGAGGCAGAAAActgaatatgaaaattgag-aaaaaa-cggatGTTACGTCTTGATT-----------------TC-AAGTGTAGTCAAGCG-AAATCTGGCAACATTc--tccttccgtttt---tcaa---ctta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=8034.000000
s ce10.chrX             3019039 33 + 17718866 TTTTCGGAGGTCGAGCTTGGAAG----GAAAGGAAAA-
s caeRem4.Crem_Contig0   223844 37 -  4500979 -TTTATGGGGTCAAGTTTTGAAGATTGGAaggggaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   327226 36 - 33334924 -ttttcggggtcaaattttaaaattttgaatagaaaa-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1366633 36 +  4147112 -tttttggggtcaaattttaaaattttgtaGGgaaaa-
i caePb3.Scfld02_0      C 0 I 1950
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I

a score=-556.000000
s ce10.chrX             3019072 2 + 17718866 TA-
s caeRem4.Crem_Contig0   223881 2 -  4500979 ta-
i caeRem4.Crem_Contig0  C 0 I 596
s caeSp111.Scaffold629   327262 2 - 33334924 -aa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1366669 1950 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I

a score=-3390.000000
s ce10.chrX             3019074 345 + 17718866 ACTATTTACATTTTCTATTTAGGGTGAATTG-AAAAAAAACCTAAAGCTTGTTTAAAATGCCCCGATTAAAAACAAATAAAACAAAGGTAGTTCAAATGTAGGTCATTTAGTTGCTCCGAGTGCAGGAAAAACTGGAGTGCAAAACATTAAATTTTGCATGTGGTCGGAAGAAAAAAAACGAACTATCTTGGAAACACTAATTAGGGATATGCAGAAATAGCTTTACTGCTCATTGGTGTAGTAAGACGGGTAGAATTCCTGGAAAAAATTTCAAATGGTTTTATGTA----GTAACCAAAAACGTTTCAGATTGGATTTTAGAAAACTTCCTTGTACCGTTTTTTTTTC
s caeSp111.Scaffold629   327264 207 - 33334924 g-----------------tcgaGGTAAATCGCAAAGAAGGAGCAACACTCATTTGA------CCGGGT-----CACCTATAACAA------------------TTATT------------------------CTTGGGGGTGGCCTATTAGGTTTTT----TGGCCAGGACCAATAAAAC------------------------------CGCA-------------TGGCAATTGTCATAACAGGTCAGGT------CTGGGTTTAAATACTATACGATTGTGTATAACCCGtgactgaaaa---------tttgatg-----------cTTTACATTGTTGTTTTATA
i caeSp111.Scaffold629  C 0 I 29
e caePb3.Scfld02_0      1366669 1950 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I
e caeRem4.Crem_Contig0   223883 596 -  4500979 I

a score=0.000000
s ce10.chrX             3019419 42 + 17718866 TGTTAGGCCCATTTTTAGCCTGGCGCTATTTTTCAGTATTTT
e caePb3.Scfld02_0      1366669 1950 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I
e caeSp111.Scaffold629   327471 29 - 33334924 I
e caeRem4.Crem_Contig0   223883 596 -  4500979 I

a score=-3425.000000
s ce10.chrX             3019461 577 + 17718866  
s caeSp111.Scaffold629   327500 384 - 33334924  
i caeSp111.Scaffold629  I 29 C 0
e caePb3.Scfld02_0      1366669 1950 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I
e caeRem4.Crem_Contig0   223883 596 -  4500979 I

a score=273.000000
s ce10.chrX             3020038 1 + 17718866 T
s caeRem4.Crem_Contig0   224479 1 -  4500979 T
i caeRem4.Crem_Contig0  I 596 C 0
s caeSp111.Scaffold629   327884 1 - 33334924 T
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1366669 1950 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I

a score=8765.000000
s ce10.chrX             3020039 119 + 17718866 TCTCCCTTTCAGAA---TATATTTTTCGAAAA------CGTTCTCCGATACTCTAGCAGTTGAAAA------CGCCAATCCCATTACTCAGTTTTTTTTGACA--TTCGATGATAAGAACCGATGAAAAATTGCCG
s caeRem4.Crem_Contig0   224480 108 -  4500979 TTCCCTTTCCAAAA---TA-ATGTTTAGAAGACCAAATCGGCTGTCAAGA----AACTGTTGGAGATACTTTCGACATTCctattactca---ttttttcacaatttctcttATATGAA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   327885  90 - 33334924 -----------------CA-ATATATGGGAAATCGTATGATTTGCCGACA----AACAGTTGGAGACTTTTGCGGCGATTCCattactca---tttttcgacGA-TTCTTCGATAT--------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1368619 102 +  4147112 -TCCCTCTTCATGAATTTa-atgttcagaaaatc----agGTTGATGACA----AACAGTTGGAGACATTTGCGCCAATCCcattactca---tttttcaacga-ttCAATGATAT--------------------
i caePb3.Scfld02_0      I 1950 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8071067 1657 + 21540570 I

a score=33346.000000
s ce10.chrX             3020158 176 + 17718866 AAAACCACGTGAACACATCGAAAAGACCTTGAGT--CGTTCTGTTCTCA---------GAGTTGATACCAC----AGATGTACTATGGTT--------CAGTGG---------CAGGATT------------GCAACATGATTTCTGAACTTA--TACATTTCAAAAAAGGGAAGAAGAAGAAAAAAGAGTATATTGTATTCATTTCAACA------GAAACGTCACT
s cb4.chrX              8072724 153 + 21540570 AAAATCACATGAAAACACTAAAAAGACCTTGAATTGCGttctcttcttattttt--tcgatttgataGTGCGCGAAGATGATTTACAGTTTC------CTGCAAGGA------CATTCTTCACCATTCCTCCCACACGTGATTTTTGAACGTA--TCTGT-----------------------------------------------------------AACGTCACT
i cb4.chrX              I 1657 I 22
s caeRem4.Crem_Contig0   224588 186 -  4500979 ---ACCACGTGAACACACCGAAAAGACCTTGAATTCTGTTCTGTTCTTTTCTCGGATTGATTTGATAATGCACGAAGATGATTTACAGTTTCTGGTCACTGCAAG---------ATTctt--------------ttggtgatttttgaaCGTA--TCTCTTCGAC-----TTGgag----gaaaaaaattcatatttcacTT-TACAAGTAAC----AAAACGTCACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   327975 178 - 33334924 AAAACCACGTGAACACACCGAAAAGACCTTGAATTGTGTTCTTTTCTCG-CGGGGCCAAATTTGATAATGCGCAAAGATGATATACTGTT--------TTGTGAGGCCTTCTGCATTCTT--------------caagtgatttttgaacgCAACTCTTTTGttc--------gaaatatgaaaaaaagttttt---------------taaa----gaaacgTCACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1368721 179 +  4147112 AAAACCACGTGAACACGCCGAAAAGACCTTGAATTGTGTTCTCTTCTC-----GGGTTAATTTGATAATGCGCGAAGATGATATACGACC--------CTGCAA---------CATTCtt--------------cgaatgatttttgaacgtA--TCTTTTTCTC-----GGTGAAATGtgaaagaagttttttctACATT------ACTAAAAACGGAAACGTCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=14636.000000
s ce10.chrX             3020334 33 + 17718866 TGTCGTTTTTCATTTTAGTGCCTCCACAAT-----GAA
s caeRem4.Crem_Contig0   224774 33 -  4500979 TGTCGTTTTTCATTGTAGTGCCCCCACAAT-----GAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   328153 33 - 33334924 TGTCGTTTTTCATGGAAGTGCCCCCACAAT-----GAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1368900 38 +  4147112 TGTCGTTTTTCATGGTAGTGCCCCCACAATGAATAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072877 22 + 21540570 I

a score=57788.000000
s ce10.chrX             3020367  99 + 17718866 --TTGAGCTTAAC-TCTAAACAAGTTTCTA-CTGGGA-CCTCTCGTGGGCGACTGTTCACTGCTCTTGAACTTTGCATTGCCTTTCAATCATTTCTGACGACCC
s cb4.chrX              8072899  87 + 21540570 --TCACACTTAACTTTTTAACAAGTTTCAA-CTGGGACCCTCTCGTGGGCGACTATTCA---ATCTTGAA-----------ctttcaatcatttttgaataccC
i cb4.chrX              I 22 I 1511
s caeRem4.Crem_Contig0   224814  98 -  4500979 --ACACTCTTAAC-TCTAAGCAAGTTTCAT-CTGGGA-CCTCTCGTGGGCGACTGTTCACTGCTTTTGAACTTTCCATAG-ctttcaatcatttttgacGACCC
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold629   328186 101 - 33334924 ATACACTCTTAAC-CCTAAACAAGTTTTCGACTGGGA-TCCCTCGTGGGCGACTGTTCACTGCTCCTGAACTTTGCATAg-ctttcaatcatttctgaCGACCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1368938 100 +  4147112 ATACACTCATAAC-TCTAAACAAGTTTCTG-CTGGGA-TCTCTCGTGGGCGACTGTTCACTGCTCTTGAACTTTGTATAG-CTTTCAATCATTTCTGACGACCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=11039.000000
s ce10.chrX             3020466 72 + 17718866 TTTCATTCCCAACGGGTTTTTGTTTCTCTGAATAGATTTTT---GGGGGTTTTTTCCTGATTTTGAGTACAAATT
s caeRem4.Crem_Contig0   224912 75 -  4500979 GTGGAGTCCCGTAGGATTTCTCTTTctacaaataaattttccaaGAAAGTTTTTCCGCATTATTTTCTATAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   328287 72 - 33334924 ACAGAATCCCGAaggatttcattttctacaaatacattttccaagaaacttttcttg---tttttagttAGAATT
i caeSp111.Scaffold629  C 0 I 615
s caePb3.Scfld02_0      1369038 69 +  4147112 AAACGGTCCCGTAggatttcattttctacaaata-attttc--agggaattcttttg---tttttcgtaaAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072986 1511 + 21540570 I

a score=-497.000000
s ce10.chrX             3020538 23 + 17718866 -AAAGTTGGTGGATCT--------TCAACTCA------
s caeRem4.Crem_Contig0   224987 31 -  4500979 -------AATGGACCAATACTTGATGAACCCATAACCC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1369107 26 +  4147112 AAGAATTTGTGGACCA------GATCAACTCA------
i caePb3.Scfld02_0      C 0 I 870
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072986 1511 + 21540570 I
e caeSp111.Scaffold629   328359 615 - 33334924 I

a score=657.000000
s ce10.chrX             3020561 34 + 17718866 GGTTTTTGAAAATTAACACC--AAAAAAATAGTAAA
s caeRem4.Crem_Contig0   225018 30 -  4500979 ------TGAAAGTTCACCCCTatataaaatatcaaa
i caeRem4.Crem_Contig0  C 0 I 668
e caePb3.Scfld02_0      1369133 870 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072986 1511 + 21540570 I
e caeSp111.Scaffold629   328359 615 - 33334924 I

a score=0.000000
s ce10.chrX             3020595 1655 + 17718866  
e caePb3.Scfld02_0      1369133  870 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072986 1511 + 21540570 I
e caeSp111.Scaffold629   328359  615 - 33334924 I
e caeRem4.Crem_Contig0   225048  668 -  4500979 I

a score=282.000000
s ce10.chrX             3022250 3 + 17718866 TGA
s caeRem4.Crem_Contig0   225716 3 -  4500979 TGA
i caeRem4.Crem_Contig0  I 668 C 0
e caePb3.Scfld02_0      1369133 870 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8072986 1511 + 21540570 I
e caeSp111.Scaffold629   328359 615 - 33334924 I

a score=-380.000000
s ce10.chrX             3022253 6 + 17718866 GAAA---AA
s cb4.chrX              8074497 2 + 21540570 -------GG
i cb4.chrX              I 1511 C 0
s caeRem4.Crem_Contig0   225719 9 -  4500979 GAAAAGTAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1369133 870 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e caeSp111.Scaffold629   328359 615 - 33334924 I

a score=111.000000
s ce10.chrX             3022259 2 + 17718866 TG
s cb4.chrX              8074499 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   225728 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   328974 2 - 33334924 TG
i caeSp111.Scaffold629  I 615 C 0
e caePb3.Scfld02_0      1369133 870 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=6071.000000
s ce10.chrX             3022261 405 + 17718866  
s cb4.chrX              8074501 520 + 21540570  
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   225730 508 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   328976 448 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1370003 485 +  4147112  
i caePb3.Scfld02_0      I 870 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=-1487.000000
s ce10.chrX             3022666 5 + 17718866 AAAAG--
s caeRem4.Crem_Contig0   226242 5 -  4500979 --AAACT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   329424 5 - 33334924 gaaaa--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1370488 5 +  4147112 agtCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8075021 51 + 21540570 I

a score=1459.000000
s ce10.chrX             3022671 599 + 17718866  
s cb4.chrX              8075072 570 + 21540570  
i cb4.chrX              I 51 I 90
s caeRem4.Crem_Contig0   226247 456 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   329429 517 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1370493 467 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=-6610.000000
s ce10.chrX             3023270 51 + 17718866 GAGTAGCACCAGTGGGAAAGGGGTCTGAAACTACTCTTATTAAGAAAaaaa
s caeRem4.Crem_Contig0   226703 21 -  4500979 ------------------------------ttgttctCATGGAAACAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   329946 35 - 33334924 --GTA--ACCAGAACGGAAGTGAGTTCCTAATATTCCGA------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1370960 28 +  4147112 -----------gaacgTGAGTACCTGCCGTCTGTTTTCA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8075642 90 + 21540570 I

a score=-127427.000000
s ce10.chrX             3023321 451 + 17718866  
s cb4.chrX              8075732 522 + 21540570  
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   226724 342 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   329981 257 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1370988 308 +  4147112  
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=-1064.000000
s ce10.chrX             3023772 3 + 17718866 ACG--
s caeRem4.Crem_Contig0   227066 3 -  4500979 --AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   330238 3 - 33334924 GTG--
i caeSp111.Scaffold629  C 0 I 14
e caePb3.Scfld02_0      1371296 13 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e cb4.chrX              8076254 0 + 21540570 C

a score=-767.000000
s ce10.chrX             3023775 21 + 17718866 C----ACGTTTCCTTTCCCTCTCCA
s cb4.chrX              8076254 18 + 21540570 -----tcttttttatgcCA--TGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227069 25 -  4500979 TTCCATTAATTTATTTCCAACTCCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1371296 13 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e caeSp111.Scaffold629   330241 14 - 33334924 I

a score=67.000000
s ce10.chrX             3023796 1 + 17718866 C
s cb4.chrX              8076272 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227094 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   330255 1 - 33334924 C
i caeSp111.Scaffold629  I 14 C 0
e caePb3.Scfld02_0      1371296 13 +  4147112 I
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=2844.000000
s ce10.chrX             3023797 39 + 17718866 AGCTGTCATATTTCATAGCC----GCACACCATATGCCGAAAA
s cb4.chrX              8076273 27 + 21540570 -----TACTATCCTGTTGCA-CTACCAACCCAG----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227095 38 -  4500979 -----TATAATTAAATTGCATCTGCCACACCATATGTCTGTTA
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold629   330256 38 - 33334924 GGCtgtcaaatttcatttcatttg-----cCATATGCCGagta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371309 43 +  4147112 GGTTGTCATATTTCATTGCCTCTGCCACACCATATGCCAAGCA
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=-4787.000000
s ce10.chrX             3023836 30 + 17718866 AAAAGTTCTCCAGGAAAAATTCA----------AGGCAGG
s cb4.chrX              8076300 19 + 21540570 --------------CAAAGTCAAAACAATTCAA-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   330294 15 - 33334924 -----ttcttt---tgaaatcca-----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371352 16 +  4147112 ----TTTCTTT---TATAACCCA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I
e caeRem4.Crem_Contig0   227133 18 -  4500979 I

a score=830.000000
s ce10.chrX             3023866 2 + 17718866 CA
s cb4.chrX              8076319 1 + 21540570 -A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227151 2 -  4500979 CA
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold629   330309 1 - 33334924 -A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371368 1 +  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   19216 4599 +   227596 I

a score=146842.000000
s ce10.chrX             3023868 298 + 17718866 GCACTTTACTAGTTGACGACTGATCATTCTCTGCATT---TTTCTTTCCGCTACCTTGCACCC-AACACTGAGGTCGTTTCGGATATAATGACAAGAATAG-AAGAGATA----CGA--GTGCGAGTGCGATCGTCACTTCTCACAACTGCTCCC-------------------------CACACACACACACACAGAAGGGGCAAGGGTTGGCTGTTGCC---ATACACT----TCTGTTTCATC---------TTCTTATTTTTTTCCTCCTT-------TC------------------TCAT------------------------ACATACAC--ATATCAAATTTTTGTCCA---------GTTGCTGCCACCTCG----TTCTATCTTACCTAGAATCTCAGTTTTC
s cb4.chrX              8076320 327 + 21540570 GCACTTTACTAGTCGCCAACTGATCATTCTTTGTATTATATTTCTTTCCGCTACTTTGCACCTACACAC--AGGTTG----GGATATGATCACAGCAATAGAAAGAGATA---GAAG--AGATGAGGTCGACCGTCATtgctctcc----ctctctctctccttgaagttttttttgtttcacatTCTCCTAGGC------------------CAATCGTC-ATATACAct----tctgtttcatcttcac--tcttttctttctttcccctcttcttct--tcttctttttctcatttttttcttcttcaca----------------aATATACACATATATCAAATTTT---------------GCCGCTGTCAC----------CTATCGCACCTAGAA----AATCtgc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227153 288 -  4500979 GCACTTTACTAGTTGACGACTGAACATTCTTTGTATT-------TTTCCGCTACTTTGCTCCT-CACAC--AGGTCGTTTCGGATATGATGACAAGAATAG-AAGAGATA---GCG-------GGGGTCGATCGTCACTTCTCACAACTGCTCCCCCTATCCT------------------------TCCTTTCC------------------CAATCGTC---ATACACT----Tctgtttcatct--------tttttcttttttctcctcttcttct--tc------------------tcatcttcacA----------------TATATACAC--ATATCAAATTTTC-CGCA---------GTGGCTGTCACCTCGTCCATTCTATCTTACCTAAAATCTCAGTTcgc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   330310 295 - 33334924 GCACTTTACTAGTTGGCGACTGATCATTCTTTGCATT-----TCTTTCCGCTACCTTGCACCC-CACAC--AGGTCGTTTCGGATATGATGACAAGAATAG-AAGAGATACGACCG-------GGGGTCGATCGTCACTTCTCACAACTGCTCCCTT---------------------TCCACCGACGCGCGCCC------------------CAATCGTC---ATACAct----tctgtttcatc---------tttttcttcatcttcttcttctttt--tc------------------tcatcttcacA----------------AATATACAc--atatcaaattttt-cgcA---------ATGGCTGTCACCTCAGTCATTCTATCTTACCTAGAATCTCAGTTCGc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371369 303 +  4147112 GCACTTTACTAGTTGACGACTGatcattctttgaatt-----tctttccGCTACCTTGCACCT-CACAC--AGGTCGTTTCGGATATGATGACAAGAATAG-AAGAGATA----CG-------GGGGTCGATCGTCACTTTTCACAACTGCTCCCTTCTTTTC-----------TATCTCCACCGACACGCGCCC-----------------TCAATCGTC---ATACAct----tctgtttcatc---------ttttttgccatcttcttcttcttctcatc------------------tcatcttcaCA----------------AATATACAC--ATATCAAATTTTT--GCA---------GTGGCTGTCACCTTGGCCATTCTATCTTACCTAGAATCTGAGTTCGc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   23815 326 +   227596 GCACTTTACTAGTTGATTGTACACCATTCTCTGAATT-----TCTTTCCGCTATCCTGCACCC-GTCGC--AT--------GGATATG---ACAAGAATAG-AAGATATG---GTGGCATGATGGCCTCGAT-----TTACACACAACTGCTCGCTCCGTCGC-----------CAGTTgcattctttctttctt------------------tatttctttctaaacactcatgtttgtttcatctcctttatctttttcttggccttctccttcttct--tc------------------tcgtcttcttgttctcctGACTCACTCGACGCGCAC--Atatcaaattttt-tgccgCTAAAGATGTCAGTGCCACCT--------CTATCTTACCTAGAATCTGAGTTTTC
i caeJap4.Scaffold17545 I 4599 I 112

a score=-70784.000000
s ce10.chrX             3024166 558 + 17718866  
s cb4.chrX              8076647 268 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227441 366 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   330605 327 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371672 286 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   24141 112 +   227596 I

a score=163243.000000
s ce10.chrX             3024724 575 + 17718866  
s cb4.chrX              8076915 633 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   227807 567 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   330932 583 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1371958 561 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   24253 688 +   227596  
i caeJap4.Scaffold17545 I 112 I 28

a score=748.000000
s ce10.chrX             3025299 22 + 17718866 TCGGCCAT--AGTTGTCAGTGA----AA
s cb4.chrX              8077548 16 + 21540570 TCAACCCC-------TCAGAAAT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   228374 28 -  4500979 TTTCCCCTATAGCTGTCAGTAATAACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   331515 25 - 33334924 TC-CCTTT--AGCTGTCAGCAGTAATAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1372519 26 +  4147112 TCTCCCCT--AGCTGTCAGTAGTTATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   24941 28 +   227596 I

a score=913718.000000
s ce10.chrX             3025321 1437 + 17718866  
s cb4.chrX              8077564 1311 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   228402 1325 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   331540 1291 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1372545 1315 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   24969 1329 +   227596  
i caeJap4.Scaffold17545 I 28 I 33

a score=-6926.000000
s ce10.chrX             3026758 31 + 17718866 TTAATA----ATGATTTAGTC-----AAC--------CATTTTCTCAA
s cb4.chrX              8078875 44 + 21540570 AC-ATAATAAAAAGCATAGTCACAAAAACTCACAGCTC---CTCATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   229727 45 -  4500979 ATAACCACAAAGAGCATAGTC---AAAAGTCCCAGCtcactctttctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   332831 37 - 33334924 A---------AGAGCATAGTAACACAAATT--ATTCTGAAGCTCGCCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1373860 44 +  4147112 ataataaaacagAGCATAGTACCAAAAAC----GTTTTACGCTCCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   26298 33 +   227596 I

a score=2520.000000
s ce10.chrX             3026789 31 + 17718866 TTTTTGAAGTAG-------TATT---CTTTTT-CATCCTTTC
s cb4.chrX              8078919 28 + 21540570 TTTTCGAAGTAG-------ATAT---TTT----CATCAACTT
i cb4.chrX              C 0 I 1028
s caeRem4.Crem_Contig0   229772 28 -  4500979 tttttgcagtaG-------TAAT---TGT----CATCAACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   332868 31 - 33334924 TTTTTTCAGTAG-------TAAT---TTTTTCACATC-ACTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1373904 34 +  4147112 ATTTCGCTGTAG-------TATTATCCTTCTCACATC-ACTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   26331 33 +   227596 ttttCGAAGTAGAATacactatt---ttttgctttt------
i caeJap4.Scaffold17545 I 33 C 0

a score=-1054.000000
s ce10.chrX             3026820 23 + 17718866 CTGGCTATTCTTTCATCAGTT--GT
s caeRem4.Crem_Contig0   229800 23 -  4500979 ATTGCTTTGCTTTCATCTTTTGT--
i caeRem4.Crem_Contig0  C 0 I 1024
s caeSp111.Scaffold629   332899 21 - 33334924 ATCGCTTGACTTTCGTCATTC----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1373938 21 +  4147112 ACCGCTTGGCTTTCGACGTTT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   26364 16 +   227596 ----ctcgCCAGTTACCTAT-----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8078947 1028 + 21540570 I

a score=3278.000000
s ce10.chrX             3026843 11 + 17718866 TTTGCATAATA
s caeSp111.Scaffold629   332920 11 - 33334924 ATTGCATTata
i caeSp111.Scaffold629  C 0 I 1202
s caePb3.Scfld02_0      1373959 11 +  4147112 CTTGCATAATA
i caePb3.Scfld02_0      C 0 I 982
s caeJap4.Scaffold17545   26380 11 +   227596 TTACCATaata
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8078947 1028 + 21540570 I
e caeRem4.Crem_Contig0   229823 1024 -  4500979 I

a score=386.000000
s ce10.chrX             3026854 22 + 17718866 AAACA-AAAAAATCACAAAGACA
s caeJap4.Scaffold17545   26391 23 +   227596 aaaagttaaaaatcaAGTAAACA
i caeJap4.Scaffold17545 C 0 I 1188
e caePb3.Scfld02_0      1373970 982 +  4147112 I
e cb4.chrX              8078947 1028 + 21540570 I
e caeSp111.Scaffold629   332931 1202 - 33334924 I
e caeRem4.Crem_Contig0   229823 1024 -  4500979 I

a score=0.000000
s ce10.chrX             3026876 4712 + 17718866  
e caePb3.Scfld02_0      1373970  982 +  4147112 I
e caeJap4.Scaffold17545   26414 1188 +   227596 I
e cb4.chrX              8078947 1028 + 21540570 I
e caeSp111.Scaffold629   332931 1202 - 33334924 I
e caeRem4.Crem_Contig0   229823 1024 -  4500979 I

a score=769.000000
s ce10.chrX             3031588 14 + 17718866 CTGCTTCCAAATTA
s cb4.chrX              8079975 14 + 21540570 CTTCTTCCAAACTT
i cb4.chrX              I 1028 C 0
e caePb3.Scfld02_0      1373970 982 +  4147112 I
e caeJap4.Scaffold17545   26414 1188 +   227596 I
e caeSp111.Scaffold629   332931 1202 - 33334924 I
e caeRem4.Crem_Contig0   229823 1024 -  4500979 I

a score=-447.000000
s ce10.chrX             3031602  6 + 17718866 --------TTTCCA
s cb4.chrX              8079989 14 + 21540570 TAAACAATAATTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   230847  6 -  4500979 --------TTTCCT
i caeRem4.Crem_Contig0  I 1024 C 0
e caePb3.Scfld02_0      1373970 982 +  4147112 I
e caeJap4.Scaffold17545   26414 1188 +   227596 I
e caeSp111.Scaffold629   332931 1202 - 33334924 I

a score=5016.000000
s ce10.chrX             3031608 13 + 17718866 AAAGGTTATCATT
s cb4.chrX              8080003 13 + 21540570 AAATGTTATCATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   230853 13 -  4500979 AAATGTTATCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1374952 13 +  4147112 AAATGTTATCAGC
i caePb3.Scfld02_0      I 982 C 0
e caeJap4.Scaffold17545   26414 1188 +   227596 I
e caeSp111.Scaffold629   332931 1202 - 33334924 I

a score=7895.000000
s ce10.chrX             3031621 21 + 17718866 ----------TTTAATTAATCAGTGACATTT
s cb4.chrX              8080016 31 + 21540570 ATTTTCTACGCACAATTAGTCAACGACATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   230866 29 -  4500979 A--TTCAGTGCACAATTAGTCAGcgacattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   334133 20 - 33334924 ----------TTCAATTAGTCACTGACA-TT
i caeSp111.Scaffold629  I 1202 C 0
s caePb3.Scfld02_0      1374965 20 +  4147112 -----------TTAATTAGTCACTGACATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   26414 1188 +   227596 I

a score=123367.000000
s ce10.chrX             3031642 249 + 17718866 TCA-----------TAAA-CCGCGATAAAGTATTTCAAGAAAGACCAAACTCCCTAATGACGATTCGGAAATTGAAATCATCATGCAATTAT--GGTGCAC----TGATAACAGTTGTATAAAAA-TCGTCATCGG-AGGCATTGATATCGCTCGATTCGAA-----AATGTCGCAAAACTTAATTTTTGTAATTTCTCTTATTGCTTCTGTGTTTTACTGCACAAATGCTTTAA---CTTGCCCAACTGGAACAAAAATCTATAACGCAAAGTGAG
s cb4.chrX              8080047 266 + 21540570 TCA-TTCTGTTGAACCACACCGAGATAATACTTTGTCGGAAAGATCAAACTCCTCGATGACGATTCGGAAATTAAAATCATCATGCAGGCGCCCATTGCGTTTCTTGATAACGAGTATATAAAA---CCTCACTGCTACCTACTGTCATCATCAGAGGCAAA----TAATGTCGCCAACTTTAATTTCTGCTCTTCTTTTAATTGCTTCTGTTGCTCAATCAACTTCTTCCGCAA---GTTGTCCAGCTGGAACCAAAATTTACAATTCAAAgtaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   230895 268 -  4500979 tcatttctgttaAACCAC-CCGCGATAAACTTGAATCGGAAAGATCAAACTCCTTAATGACGATTTGGAAATTAATATCATCATGCAGGTGCCGATTACACTCATTGATAACATTTGTATAAAAA-CCTCCACTAC--CCTACTGATATCGTAACAAACGAA-----AATGTCGCCAActttaatttctgttttccttCTGGTACTTATTGGTCTTCATTCGTCTGTTTCTGCAGCATCATGTCCGGCTGGGACAAAAATTTACAACTCAAAGTGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   334153 265 - 33334924 TCGATTCACTTCGATCAA-CCCTGATAATGCTCCACCAGAAAGATCAAACTCCTCAATGACGACTCGGAAATTAAAATCATCATGCAGGTGCTCATTGCACGACATGATAACATTTGTATAAAAC-TCGTCATTAA--CTCACTGATATCGtaacaattgaa-----aatgtcgtcaacattatttttttcttttcttctgatagCTACTGTTTTCCACTCTTCGTTTGCTCTAA---CTTGTCCAGCCGGAACTAAACTTTATAATTCAAAGTAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1374985 265 +  4147112 TCGATTCACTTGGAGCAA-CCGCGATAATTCTTATTCGGTAAGAGCAAACTCCTCAATGACGATTCGGAAATTAAAATCATCATGCAGGTGCCGAGTACACCAATTGATAACATTCGTATAAAAA-TCGTCACTAC--CTCACTGATAtcgaaacaattgaa-----aatgtcGCCAACATTAATTTCTGCCTTTTTGCTGATAGCTAccgtttttcattcttcacttGCTGCAA---GTTGTCCCACTGGAACAAAACTCTATAACTCAAAGTGAG
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17545   27602 231 +   227596 TCA-----------TAAA-TGATGAGAATAC-------GGGAGACCAAACTCCTTAATGACGATTC------TTAATTCGCCGTGTTTGCGCTC---------------AATTTTTATATAAAAACTCGTCACCGA--TAGGCTGATACGGCCA-AATCGAAATGTCAATGGCGTCAACTTTTATTCTTATTCTTCTAATTGCAGCAACTGCTTTCAATTCCGTGGAATCAGCTT---CCTGTCCATCTGGAGCAAAATTGTACAATTCAAAGTATG
i caeJap4.Scaffold17545 I 1188 I 1

a score=-11217.000000
s ce10.chrX             3031891 38 + 17718866 AAT-----CCGTTCTTATTCGAATT-------------GCACT----GTTAATAC-ATTTG
s cb4.chrX              8080313 29 + 21540570 -------------aattttggaaaa--------------tatc----gGTACCAT-ATTAA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   231163 30 -  4500979 -------------TTTGATCTGATT--------------TATC----AGTTCGATCATTTT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   334418 29 - 33334924 -----------------TTGGAATA--------------TATCTACTGATCTCGT-ATTCA
i caeSp111.Scaffold629  C 0 I 5
s caeJap4.Scaffold17545   27834 55 +   227596 AATTGTAACTataattatttgaattttaaaagattCTAGCATA----AGTAGCTA-ATTT-
i caeJap4.Scaffold17545 I 1 C 0
e caePb3.Scfld02_0      1375250 37 +  4147112 I

a score=210397.000000
s ce10.chrX             3031929 293 + 17718866 TTTAGATGCTACGCAGCTCTTGGCATGGATATGACTCGGGATAATGCCCTTGCCTACTGCCGGAAGACATACGGACCATATGCCAGACTCACCACACCCCTCACGTATGCTGAGAATAACTTTGTCACTGAACAAGTTCAATGTAAGTTTAAAACGTTTTATCTACATACATTTGAATTA-----------------TTGTAGTACATGCTAATTGGCACACTTGGCTCGAATATGTAGCTGATGGAACATATATTGTTGGAGATGACGGAAAACCACCAATCTACACAAACTTTGCAGTTGGTAAGTTC
s cb4.chrX              8080346 287 + 21540570 TTCAGATGCTATGCTGCGTTGGGAATGGATATGACAAGAGATAATGCTCTCGCGTACTGTCAGAAAACATACGGACCATATACCCGACTCACAACACCTTTGTCctatgctgaaaataattttgtcACTGAGCAAGTACAATGTGAgtctgacattttttgaaga-------ttgtaTTC-ATGA--------AAACTTCTAGTGCATGCTAACTGGCACACCTGGCTGGAATTTGTCGCTGATGGTACCTACATTGTTGGGGACGATGGAAAGCCACCAATCTATACAAACTTCGCTGTTGG-------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   231197 295 -  4500979 TTCAGGTGCTATGCTGCACTTGGTATGGATATGACAAGAGATAACGCTCTGGCTTACTGTAAGAAGACATATGGGTCATACGCTAGACTTACTACACCTCTTACTTACGCTGAAAACAACTTTGTGACGGAACAAGTGCAGTGTAAG--AGATATTTTCTGGAGACGGGCAGttgtattt-------------caattttcagtgcacGCTAACTGGCACACCTGGCTCGAATTTGTCGCCGATGGAACCTATATCGTCGGGGATGATGGCAGACCACCAGTCTACACTAATTTCGCAGTCGGTAATTTC
i caeRem4.Crem_Contig0  I 4 I 66
s caeSp111.Scaffold629   334452 294 - 33334924 TTCAGATGCTACGCTGCTTTGGGAATGGATATGACTCGAGACAATGCTCTTTCTTATTGTCAAAAAACATATGGACCATACGCTAGACTAACTGCACCTCTCTCTTACGCGGAAAATAACTTTGTGACCGAACAAGTTCAATGTAct--gaatatttatttaa---taTCTAGTTTAAGACAATA--------ATAATTTTAGTGCATGCCAATTGGCACACATGGCTGGAGTTTGTAGCCGATGGAACATATATTGTTGGAGACAATGGAAAACCACCAATATACACTAATTTCGCAGTTGGTAAA---
i caeSp111.Scaffold629  I 5 C 0
s caePb3.Scfld02_0      1375287 298 +  4147112 TCCAGATGTTACGCAGCATTGGGTATGGATATGACTCGCGACAAAGCTCTTGCATATTGCAAGAAAACTTATGGATCTTATGCCGTACTCGCAACACCCCTCACTTATGCTGAAAACAACTTCGTAACAGAACAAGTTCAATGtaat---aacattttcagaaaggaaaCCAGTATaata-acta--------aaattttcagtgcacGCCAACTGGCACACATGGTTGGAATTTGTCGCCGATGGAACCTACATTGTTGGAGATGATGGAAAACCACCAGTCTATACCAACTTTGCTGTTggtgagttt
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17545   27889 308 +   227596 TCCAGATGCTACGCTGCTCTTGGCATGGATATGACTAGAGACAATGCATTGgcttattgtcaaaaaacttaTGGATGGTATGCTCGATTGACCACCCCGCTTACCTACGCGGAGAACAACTTTGTCACCGAGCAAGTTCAATGTGTG-TCAGCTCTTCCGAGCGACAAACACttaattta-tatattttttttaacatttcagTGCATGCAAACTGGCACACTTGGCTCGAATTCGTTGCCGATGGAACGTACATTGTTGGAGATGATGGTCGTCCGCCAGCATACACTAATTTTGCAGTTGGTAGGGCC
i caeJap4.Scaffold17545 C 0 C 0

a score=-8912.000000
s ce10.chrX             3032222 41 + 17718866 ------AAAAAGCTTTCAATTGAACA----------TTTTGTTCACCAGTCATTTTG
s caeSp111.Scaffold629   334746 35 - 33334924 --------CGAACTTTGTATTTATCA----------CGACTTTCACA----CTTGGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1375585 42 +  4147112 -------tcgaattttgaa--aaccaagaaaaaaagcgaagtttgaa------taaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   28197 36 +   227596 GAGAATACACAGTTTTCAG-----TA----------CAACCCTTACA---TATT---
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8080633  0 + 21540570 C
e caeRem4.Crem_Contig0   231492 66 -  4500979 I

a score=121349.000000
s ce10.chrX             3032263 137 + 17718866 TTTCAGGAGAACCATTCAGTGTAAACGTTGGTTATTGCATCACAATTGGAATGAACGGATACTGGTATGCTCAGCCATGCCCAGATTCTCACAGTGTACTGTGCGAATTTGACCTTGTGCCAC---CAACCCCGAAACCA
s cb4.chrX              8080633 130 + 21540570 -------AGAGCCATTCAGTGTCgctctgggttactgtatcacGATTGGAATGAATGGATACTGGTATGCCCAGCCATGCACCGATTCCCACAGTGCTCTTTGTGAGTTCGACTTGTACCCAC---AAACTCCGAAGCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   231558 137 -  4500979 TTTCAGGAGAACCATTCAGTGTGAGTCTCGGTTACTGTATCACTATTGGAATGAACGGATACTGGTATGCTCAACCATGCACTGATTCGCACAGTGCTCTTTGCGAGTTTGATTTGGTGCCAC---CGACAGTGAAACCA
i caeRem4.Crem_Contig0  I 66 C 0
s caeSp111.Scaffold629   334781 137 - 33334924 TTTCAGGAGAACCATTCAGTGTTAATGTAGGATACTGTATTACTATTGGAATGAATGGATATTGGTATGCTCAGCCTTGCATTGATTCTCATAGCGTTCTCTGTGAGTTCGATTTGGTTCCAC---CAACTGTCAAGCCA
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1375627 137 +  4147112 tttcaggAGAGCCCTTCAGTGTTAGCGTTGGATACTGTATTACTATTGGAATGAATGGATATTGGTACGCCCAACCATGTGCTGATTCTCACAGCGCTCTTTGTGAATTTGCATTGTACCCAC---CAACTGTCAAGCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   28233 140 +   227596 TTTCAGGAGAGCCATTTAGTACTAACAAAGGATATTGCATCACTATTGGAATGAATGGATACTGGTATGCTCAACCGTGTGAGGACTCTCACAGTGCTCTTTGCGAATTCGATTTGTACCCACTCACCACTTTGAAACCA
i caeJap4.Scaffold17545 C 0 C 0

a score=-1927.000000
s ce10.chrX             3032400 7 + 17718866 GTGCTCA
s cb4.chrX              8080763 4 + 21540570 ---ACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   231695 4 -  4500979 ---ACTA
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      1375764 7 +  4147112 ACCACCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   28373 2 +   227596 GT-----
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   334918 7 - 33334924 I

a score=168207.000000
s ce10.chrX             3032407 272 + 17718866 CCACAACTGTAAAACCAAGTGGATTTCCGAGCTGTGTTCAAAAGTATTTGAGTAAGTTATTTTTCTGGAGGATTTCCAAATTTATTAATTGG----CTCTTCA--------TTTCAGACTTTGTTCCATGCCAATCCGGATGGGAGTACTATCCACCAACATGTGCTTGTTTCAA--------------------------------------------------GATTATTTCCAACACTACCTATTATAATGCTATGAACACTTGTAGAAGCATGGGAGGAACACTGGCTTCTGTTCATAATGCAGGAGAAGCTGCTTTCATTAACCGTAAG
s cb4.chrX              8080767 308 + 21540570 CGCCTACTCCAAAACCAAGTGGATATCCAAGTTGTGTGCAAAAGTATTTGAGTGAGT-----TTT-------ATtccaaaattggaaatgagaaaaattt--------tactTTCAGACTTTGTTCCATGTCAAGCAGGATGGGAGTACTACCCACCAACTTGCTCCTGCTTCAGAGTGAG------AtttcaaatatgaaaataGATTTTACTAATTTATTTTAGATTATCAGTAACACCACCTACTACAACGCAATGAATACCTGCAGAAGCATGGGTGGAACTTTGGCTTTCGTTCACAACTCTGGAGAGGCTGCATTCATTAACCGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   231702 308 -  4500979 CACCTACTCTTGCTCCAAGTGGATACCCAAGCTGTGTGCAGAAGTATTTGAGTAAg-------ta-------gtttgaaaattgttctcG------GTTTTCA-CGACTATTTCCAGACTTTGTCCCCTGCCTGTCCGGATGGGACTACTACCCGCCGACTTGTTCGTGTTTCAAAGTAAGTAGTAATTTTCAAA----GACATCATTTCtacttctgt-tttcagattattaCTAATACTACCTACTATAATGCCATGAATGTCTGCAGAAGTATTGGTGGAACTTTAGCTTCAGTTCATAATGCTGGAGAAGCCGCATTTATTACCAGTAAG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   334925 310 - 33334924 CCACTACTGTGAAACCAAGTGGATATCCTAGCTGCGTTCAGAAATATTTGAGTGAGTTTCTCTTC-------ATGAAATATTTAATACTATGAA--CTATTCG---------TTCAGATTTCGTTCCATGCCAATCCGGTTGGGAATACTATCCACCAACATGTGCTTGCTTCCGGGTATT------ATTTATAATTGAGAAACCAGTATGACCTATGAAATTTAGATTATCTCCAACACAACTTATTACAATGCCATGAATACCTGCAGAAGTCTTGGAGGCACTTTGGCTTCCGTTCATAACGCCGGAGAAGCTGCATTCATCAACCGTGAG
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1375771 264 +  4147112 CAACTACCGTGATTCCAAGTGGATATCCAAGTTGTGTGCAAAAGTATTTGAGTGAGT---------------ATAAGGAAATTAAGGGTTT-----ctgttcaattcttcttttcagactTTGTTCCATGCCAATCTGGATGGGAATACTACCCACCAACCTGTGCTTGCTTCAG--------------------------------------------------AATTATCAGCAACACTACATACTATAATGCCATGAATACCTGCAGAAGTATTGGAGGCACATTGGCTTCAGTTCACAATTCTGGAGAAGCCGCTTTCATCAATCGTGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   28375 262 +   227596 -TACTGCTCCAAGTCCAAATGGATTCCCATCTTGTGTTCAAAAGTATTTGAGtacgttatttttt-------tt-----atctatTACAGT-----AACTTCA----CCCTTCTCAGATTTCGTACCGTGCCAAGCTGGCTGGGAATACTACCCACCAACATGTTCTTGCTTCCG--------------------------------------------------GATCATTTCCAACACTACATACTATAACGCAATGAACACATGCAGAAGTATGGGAGGAACGTTGGCTTCGGTTCATAATTCTGGAGAAGCAGCGTTTATTAACAGTAAG
i caeJap4.Scaffold17545 C 0 I 8

a score=-7554.000000
s ce10.chrX             3032679 15 + 17718866 -ATTTTGCGCTAAAA--T
s cb4.chrX              8081075 11 + 21540570 -CGTTATTTTTC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   232010 11 -  4500979 ----TAGTTTCCAAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   335235 14 - 33334924 -CTATTTCTCTCGGA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1376035 17 +  4147112 ACTATAACCactaaaat-
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17545   28637  8 +   227596 I

a score=-63.000000
s ce10.chrX             3032694 3 + 17718866 CAA
s caeRem4.Crem_Contig0   232021 3 -  4500979 TAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1376052 21 +  4147112 I
e caeJap4.Scaffold17545   28637 8 +   227596 I
e cb4.chrX              8081086 0 + 21540570 C
e caeSp111.Scaffold629   335249 0 - 33334924 C

a score=-8260.000000
s ce10.chrX             3032697 23 + 17718866 --------TTATATATGTACTTATATTCGAA
s cb4.chrX              8081086 20 + 21540570 -----------TTCGGAACCTGACATACCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   232024 23 -  4500979 --------GTATTGACTagctaaaatttcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   335249 21 - 33334924 ---------GATTaccaaacttttttttca-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   28645 23 +   227596 TTTTGAATGTATGCAAATCCTTT--------
i caeJap4.Scaffold17545 I 8 C 0
e caePb3.Scfld02_0      1376052 21 +  4147112 I

a score=245114.000000
s ce10.chrX             3032720 337 + 17718866 TT--TTCAGGTCTTGGAGTCCAAGCGAATTCATATTGGGTTTCTACCGCGACAGCTAGAGACAACATTATTATTGGGCTAACTTATAACTCGGACCGTGGATACTTCCAATGGGATGACTCTACTGTTTTTGACTATGCTCAGGGATTCGCTCCAGCTGAGCCGGCCGACTATACTAGCCAGGGACAGGTA--C----TAATTTTTT-----------TGAAAC----GGCATTTTTTTCAATGT--TTGTTGTTTTCAGATTATCTTGAACAATCCGATGGGGTATGCAACCTACATGAGAATGGGCAACTGTGCCTATCAAACATGTCGATATGCAGCATGTAAACGATATGTCTATTAA
s cb4.chrX              8081106 334 + 21540570 ATAATTCAGGTCTTGGAGTACAAGCTAACAATTACTGGATTTCCACCGCATCCGCCAGAGATAACATCATTGTTGGACTTACCTACAATTCAGACCGTGGCTATTTCCAATGGGACGACTCGACCACATTCGACTATTATCAAGGGTTTGCTCCAGGAGAGCCAGCTGATTACAATAGTCAGGGACAGGTA--TGACTTAATTACTC-----------TG--------ATTAAATTCtaacttga-------tttttcagatcattctGAGCAACCCTATGGGATACACCACGTATATGAGAATGGGTAACTGTGCCTCTCAAACCTGCCGCTACGCTGCATGCAAACGATATGTTTACTGA
i cb4.chrX              C 0 T 2355
s caeRem4.Crem_Contig0   232047 336 -  4500979 tt--ttcaggactCGGAGCACAAGCAAACTCATACTGGACTCTCACAGCAACCGCTAGAGATAACATTATCGTTGGACTCACTTACAATTCTGATCGCAAAATCTTCCAATGGGACGACTCCACAGTTTTCGACTACGCTCAAGGTTTTGCTCCAGCTGAGCCAGCTGATTACACCAGTCAGGGACAGG---------TAAGTATCC-----------TGAGACCGGAATAAACAGTTAACATAA----ATTGTTTACAGATCGTTTTGAGTAACCCAATGGGGTATGCAACTTACATGAGAATGGGCAACTGTGCATTCCAAACCTGTCGTTATGCTGCATGCAAACGATATGTATACTAA
i caeRem4.Crem_Contig0  C 0 T 2435
s caeSp111.Scaffold629   335270 336 - 33334924 tt--tccaggtCTTGGAGTTCAAACGAACTCGTACTGGATTTCGACTGCTTCAGCCAGAGACAATATTATCGTTGGTTTGACTTACAACTCTGACCGTGGATATTTCCAATGGGATGATTCCACTGTTTTTGATTACGCTCAGGGCTTTGCACCGGCTGAACCAGCTGAATATACTACTCAGGGACAGG---------TACATAGTT-----------TGGAAa----gttacttttttctgtcatttgaatgatttcagattattcTGAGCAACCCAATGGGATATGCTACTTACATGAGAATGGGTGACTGCTCATATCGAACATGCCGTTATGCTGCATGTAAACGATATGTTTATTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1376073 339 +  4147112 TT--TTCAGGTCTCGGAGTACAAACCAACTCTTACTGGATTTCAACTGCTTCTGCTAGAGACAACATCATTGTTGGACTCACATACAACTCTGATCGTGGAATCTTCCAATGGGATGATTCTACAACTTTCGATTATGCACAAGGTTTCGCCCCAGCTGAGCCAGCTGATTACACTAGCCAAGGACAGG---------TGAGTcactatcaaaaacaaaaaaaa----tgtaattattAGCCTCA--------ATTTCAGATCATCCTAAGCAACCCAATGGGATATGCGACATATATGAGAATGGGAAATTGCGCCTTCCAAACATGTCGTTATGCAGCTTGTAAACGATATGTGTATTAA
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17545   28668 334 +   227596 AT--TACAGGGCTTGGAGTTCAAGCAAACTCTTATTGGGTTTCGACTGCTTCTGCAAGAGATAACATTATTATTGGACTCACCTATAACTCGGATCGTGGTTACTTCCAATGGGATGATTCTACTGTCTTTGATTACGCTCAAGGTTTTGCACCAGGAGAGCCTGCCGATCATAAAAGTCAAGGACAggtaatt----taaaaatac-----------tgaAAA----GCAGGTTAATACCAATG-------AAGTTCAGATCATATTGAGCAACCCACTGGGATACGCCACGTACATAAGAATGGGTGATTGTTCATACCAAACGTGTCGCTACGCAGCTTGCAAAAGATATGTTTACTAA
i caeJap4.Scaffold17545 C 0 C 0

a score=91.000000
s ce10.chrX             3033057 1 + 17718866 A
s caeJap4.Scaffold17545   29002 1 +   227596 A
i caeJap4.Scaffold17545 C 0 I 1482
e caePb3.Scfld02_0      1376412 0 +  4147112 C
e cb4.chrX              8081440 2355 + 21540570 T
e caeSp111.Scaffold629   335606 0 - 33334924 C
e caeRem4.Crem_Contig0   232383 2435 -  4500979 T

a score=1032.000000
s ce10.chrX             3033058 19 + 17718866 AGTGTTC-------TATTGATTTGTT
s caeSp111.Scaffold629   335606 15 - 33334924 ----TTC-------CATTAACTTGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1376412 22 +  4147112 ----CTTTTAGATGTTttgatttgtt
i caePb3.Scfld02_0      C 0 I 417
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8081440 2355 + 21540570 T
e caeRem4.Crem_Contig0   232383 2435 -  4500979 T

a score=150.000000
s ce10.chrX             3033077 13 + 17718866 TCTT---TATTCTGAT
s caeSp111.Scaffold629   335621 16 - 33334924 TGTTACCTATTTTTAT
i caeSp111.Scaffold629  C 0 I 138
e caePb3.Scfld02_0      1376434 417 +  4147112 I
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8081440 2355 + 21540570 T
e caeRem4.Crem_Contig0   232383 2435 -  4500979 T

a score=0.000000
s ce10.chrX             3033090 2836 + 17718866  
e caePb3.Scfld02_0      1376434  417 +  4147112 I
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8081440 2355 + 21540570 T
e caeSp111.Scaffold629   335637  138 - 33334924 I
e caeRem4.Crem_Contig0   232383 2435 -  4500979 T

a score=322.000000
s ce10.chrX             3035926 29 + 17718866 ACACATACCCTTTA--CTACATAAATTTTCA
s caePb3.Scfld02_0      1376851 28 +  4147112 acttatattttttaatctacaaaaaa---ca
i caePb3.Scfld02_0      I 417 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8081440 2355 + 21540570 T
e caeSp111.Scaffold629   335637 138 - 33334924 I
e caeRem4.Crem_Contig0   232383 2435 -  4500979 T

a score=546.000000
s ce10.chrX             3035955 1 + 17718866 A
s caeRem4.Crem_Contig0   229948 1 -  4500979 a
i caeRem4.Crem_Contig0  T 2435 C 0
s caeSp111.Scaffold629   335775 1 - 33334924 a
i caeSp111.Scaffold629  I 138 C 0
s caePb3.Scfld02_0      1376879 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8081440 2355 + 21540570 T

a score=66791.000000
s ce10.chrX             3035956 146 + 17718866 AAAAAATTATTCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGAGCCATAAATCCTAACCACTAGACCACAACGGAGATG----TTTCAAACAGAACTTAGGCGCACC-----ATAGAGCAGACATAG-------ACAGA-----AAAAGAAGAAAACGAGT
s cb4.chrX              8079085 147 + 21540570 aaaaagatATTCCGTTgcggggaatcgaaccccggcCTTATGGGTGAGAGCCATAAATCCTAACCACTAGACCACAACGGAGACA-----TTCAAACACTAA-TAGACGCAGGTT---ATATAGTCGGCGCTG-------GCGGC----GGGGAGAGAAACAAGAGT
i cb4.chrX              T 2355 C 0
s caeRem4.Crem_Contig0   229949 156 -  4500979 aaaaagttattccgttgcggggaatcgaaccccggccTTATGGGTGAGAGCCATAAATCCTAACCACTAGACCACAACGGAGACA----CTTTATGTAGCGA-GAGAAACAACTTAAAACATGACAAGTGCCGAGAAATTGAAGC-----gcgagagaaaagagaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   335776 152 - 33334924 aaaaagatattCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGAGCCATAAATCCTAACCACTAGACCACAACGGAGATGGAAACTTTAGCGGCGTA----GCGCAACT----AAAGGACAACTGACG-------CACACtcattgagagagaaaagtttgt
i caeSp111.Scaffold629  C 0 I 52
s caePb3.Scfld02_0      1376880 147 +  4147112 aaaaaagtattccgttgcggggaatcgaaccccggcCTTATGGGTGAGAGCCATAaatcctaaccactagaccacaacGGAGATGTAAACTTCAGACACTCA----ACATTTTT----ATATAACAGCTGagg-------cagaa-----aaaagaaaaaagagagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I

a score=-8138.000000
s ce10.chrX             3036102 28 + 17718866 AGC-------------------------ATGTGTGTTTGCTGCT--TTATATTTA------------------------------------
s cb4.chrX              8079232 24 + 21540570 ----------------------------ATGC-CGAGTGTTGAC--TTGTCTTCA------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   230105 24 -  4500979 ----------------------------aagt-cattTGTTGAC--TTGCTGTCA------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1377027 89 +  4147112 -gtcGTTTCGGCGGCATAAGTTCAAATAACGC-AGGTTTTCGGCGGCAGTCATCAAGAGAGATAGAAACTTGGAGAGTCAATTCAAACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e caeSp111.Scaffold629   335928 52 - 33334924 I

a score=191.000000
s ce10.chrX             3036130 14 + 17718866 -TCCTCGTGATGGAG
s cb4.chrX              8079256 15 + 21540570 TCACTTGAAACGAGT
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   230129 15 -  4500979 TCACTCGCCGTGAAA
i caeRem4.Crem_Contig0  C 0 I 2516
s caeSp111.Scaffold629   335980 11 - 33334924 ----TCATGACGAGA
i caeSp111.Scaffold629  I 52 C 0
s caePb3.Scfld02_0      1377116 13 +  4147112 --TTTCATAACAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I

a score=33183.000000
s ce10.chrX             3036144 117 + 17718866 ---------------------------AAAAAGT-----------GTGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACGCAGTAACTTTT-------TAATTTTTCAAACA-AATTTTACCATTT---------
s cb4.chrX              8079278 133 + 21540570 ---------------------------TTAATGT-----------GTGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGacgggggttcgattccccccgaacgcagtaatctttttttttgtgtttttttttcta-ttacaAAATAACTttgcaaatc
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold629   335991 154 - 33334924 GATAGAAAGGCAAGATGTCTTTTGCCTCTTACGTTTGGTGATCAGGCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACGCATacatttt--------tgcttttttgggCA-CAACTAAATACTT---------
i caeSp111.Scaffold629  C 0 I 154
s caePb3.Scfld02_0      1377129 130 +  4147112 GA---AAAGG-----------------CCTATGT-----------GCGcgttcgtggtgtaatggtcagcatggatgccttccaagcattcgacgggggttcgattccccccgaacgCAGAAACCTTTTGGTC--TTCTTTCATGAAAAGcatcaaaatgatt---------
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e caeRem4.Crem_Contig0   230144 2516 -  4500979 I

a score=-893.000000
s ce10.chrX             3036261 11 + 17718866 ---------CTTTCTTCCTT-
s cb4.chrX              8079411 11 + 21540570 ---------tttttttgcct-
i cb4.chrX              C 0 I 6736
s caePb3.Scfld02_0      1377268 21 +  4147112 TGAAACGTATATTCAGTCCTC
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e caeSp111.Scaffold629   336145 154 - 33334924 I
e caeRem4.Crem_Contig0   230144 2516 -  4500979 I

a score=-1217.000000
s ce10.chrX             3036272 149 + 17718866 TTCCATGGTTTACA----------------TATTTGCTAAGATTGTTTCTTTTTGAAAGTTAACATTTTCTCTTTAATACGTAGTTTTCT--------TATTAAGAGT----GCTGCGTTTTCCTTTTCTGAAATATGATGAAATTTTGAACAGGAATGTAAAAAAATTAAAAGAAT
s caePb3.Scfld02_0      1377289 139 +  4147112 TTAGTAAGTTTTCAATACAACTCAGCTCCCtattaaccaaaa------------aaaaattgttattggATTTATTGAACGCTGTTTTTCGCATTTACTGTCAAAAGCAGACGTTGTGTGTTCcttatttcaag--------------------------aaaaaaactcttcaCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8079422 6736 + 21540570 I
e caeSp111.Scaffold629   336145 154 - 33334924 I
e caeRem4.Crem_Contig0   230144 2516 -  4500979 I

a score=-2544.000000
s ce10.chrX             3036421 55 + 17718866 AATTTGAAG-TTCATTACTGGCACCTGCCGTGTGGAATATGTACATTA-TGTTTATA
s caeSp111.Scaffold629   336299 31 - 33334924 AATTGGAAA--TCATT---------------------TATTGGtattcttcttt---
i caeSp111.Scaffold629  I 154 C 0
s caePb3.Scfld02_0      1377428 32 +  4147112 AATCATAACTTTCATT---------------------TCGATGCAATC-TCTGT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8079422 6736 + 21540570 I
e caeRem4.Crem_Contig0   230144 2516 -  4500979 I

a score=-36.000000
s ce10.chrX             3036476 440 + 17718866  
s caeRem4.Crem_Contig0   232660 454 -  4500979  
i caeRem4.Crem_Contig0  I 2516 I 5
s caeSp111.Scaffold629   336330 440 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1377460 458 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I
e cb4.chrX              8079422 6736 + 21540570 I

a score=13545.000000
s ce10.chrX             3036916 52 + 17718866 TATTCTTCTTCTTCTTCGTAC------TTTTCTTG---------------TTTGTTGAAATGACACTCCATAT
s cb4.chrX              8086158 67 + 21540570 tgctcttgttcatcttcattt------tcttctgtttcggcatcagcgatttttttaaaatggcACGTGTCAT
i cb4.chrX              I 6736 C 0
s caeRem4.Crem_Contig0   233119 64 -  4500979 tcttcttcttcttgctcatcc------tcttcttcttcgtggtcttc---ttTATTGAAACGACACTTCATAT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   336770 70 - 33334924 tattcttcttcttcttcctcagtTTCTGCTTCCgaattgttgttttc---tttcaggaaCTGACATTTCAAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1377918 64 +  4147112 tactcttcttcctcctcttca------gcTTCAgagttgttgttttc---tttacGGAATTGGCATTTCAGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   29003 1482 +   227596 I

a score=46369.000000
s ce10.chrX             3036968 100 + 17718866 TTTTTGGCAGCAAGTGGACCGTCTCGCCTTCACTTACAGTTCTAAGCTTGACACTTCCGTTGCGGATTGGAGTGGATACAGCATCCTGAAACAAGGACAT
s cb4.chrX              8086225  88 + 21540570 TCTTTGGCAGCAATTTGACTGTTTCACTCTCGCTTACGGTGCGCAATTTGACACTTCCGTTGCGAATGGGAGTGGAAGTTT---CCTGAAA---------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   233183  97 -  4500979 TCTTTGGTATTAATTTGACAGTTTCGCCTTCACTGACAGTCCGATGTTTTACACTACCATTGCGAATTGGTGTTGCAGGAT---CCTTAAAAGCAAAGAT
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold629   336840  99 - 33334924 CATTTGGAAGCAGTTTGACTGTCTCACTTTCACTGACTGTTCTGTGTTTGACACTACCGTTCCGGATCGGAGTTGATATATTCGTCTGAAATGAGAAT-T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1377982 100 +  4147112 AGTTTGGAAGCAATTTGACAGTTTCACTTTCACTGACTGTTCTTTGTTTGACACTGCCGTTGCGAATTGGAGTAGACatgttttcctgaaaaaacaacag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   30485  90 +   227596 TTTCTGGAAGGAGCTGAGTGGTTTCACTTTCGGAGACTGTGCGAAGTTTTACACTGCCATTGCGTCTTGGAAGAATGAATT---CCTGAAATA-------
i caeJap4.Scaffold17545 I 1482 C 0

a score=-9917.000000
s ce10.chrX             3037068 31 + 17718866 --------GAAAATTTGAACTCAAATATAGCAAAAAAGA
s cb4.chrX              8086318 23 + 21540570 --------ATTGTTACATTTTT---CATGGGAAA-----
i cb4.chrX              I 5 I 2
s caeSp111.Scaffold629   336939 22 - 33334924 --------ATGagtcaaaattc---------aaaaaata
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1378082 21 +  4147112 --------attATTCTGATctc---------aaacca-a
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545   30575 21 +   227596 TTCAAAATGTTGctaacaact------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   233280 26 -  4500979 I

a score=33585.000000
s ce10.chrX             3037099 80 + 17718866 TATA-AGCTTTTGACAAGTCTAT-AAGGGAGGTAGCATGGCGTTACGACACTTC--AACAAAATTTT--------------TTGCAAACC--AATTTTGT
s cb4.chrX              8086343 67 + 21540570 CTTT-AGC------CACGTCTATCGGGGGAGGTAGCATGACGTTACTACACTTTGGAACATA-----------------------AAAC---AATGTCGT
i cb4.chrX              I 2 I 26
s caeRem4.Crem_Contig0   233306 83 -  4500979 CTTA-AGCGTTTGTCACGTCTAG-AGGGGAGGTAGCATGGCGTTACAACACTTC--AACATAATTTG-------------ATGGCAAACCAAAATTTTGT
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold629   336963 84 - 33334924 cttgaAGCTTTTATCACGTCTAT-CGGGGAGGTAGCATGGCGTTACAACACgtc--aacaaaaattt-----------gaatggcAGACC--ACTTTTGG
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1378105 81 +  4147112 tttg-agctttttacACATCTAT-CGGGGAGGTAGCATGGCGTTACAAcacttc--aacaaaatttt-------------atgGCAAACC--AATATTTG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545   30596 84 +   227596 ----------tttttttatttgg-caAGG-GGTAGCATAACATTACAACACGTG--AACATATTTTATTCTAGCACATGTTTTGCAAACA--AATTTTGT
i caeJap4.Scaffold17545 C 0 C 0

a score=-4871.000000
s ce10.chrX             3037179 20 + 17718866 ---TGCGGATTTGATTTCACAC-A
s caeRem4.Crem_Contig0   233389 15 -  4500979 -----CG---CAGATTTTACACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   337047 12 - 33334924 ----------CGGTTCTCACAC--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1378186 12 +  4147112 ----------CGGTATTCAcac--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   30680 18 +   227596 AAAGCTG---TAGTTTGCACT---
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8086410 26 + 21540570 I

a score=71344.000000
s ce10.chrX             3037199 312 + 17718866 CGCAAATAATTCCAAATATAATATAATAAATAGAGGAGTTTCAGATATGAATCAAAAT--AAAAATCGATTTTCAGA------AGAAGTACACACGGTCACCTTACCAGAGTA-GAAGCTACACGTATGTGCCTCTACGTTTCCAACGGCCAATTAAATATTTCTAAATTTGTTTCTCAAA-----------------------TGATATTT--GTTTCA---------ATTTGA-ATTTGTAGTAATGCTAGAGCACGTTTCA---AAATGTGAAATTGT----CTTACCTTTGGAATTTCTTCGATCAAGCTAATTCTAGAGTTGGAGCGGACAACTTGCATCTTTGTGTTACTGAAA---TTC
s cb4.chrX              8086436 284 + 21540570 ----------------TGGAGAAAATATCACACATTATGTTTAAAAAACcagagaagttcaaaaa------acgagAGATTCGAGAAGTACACACGTCAACCTTACCGGAGA--GACACTAAACATAAGTGCCTCTACGTTTCGAACGGCCCATTAACAATTTCTAAATGT-TATGTAAtgtatccaaaaaatttt--------ggaaatta--gtTTTC---------AATTGA--------------------------------TAATAGGATTTTGGCTAGCTAACCTTTGGAATCTCCTCAATCAAACTGGATCTCGAATTGGAACGGACCACTTGGACTTtcgaattgctgaaa------
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   233404 305 -  4500979 ----------------CGCAGTAATTCAAATACA-------TATAAGTCTTTTGGAATTCATAGT------CTTAGA------AGAAGTACACACGTTTACCTTACCAATTACTGAGACTACACGTATGTGCCTCTACGCTTCCAACGTCCAATTAAATACTTCTAAATTCAGATGTGAAGTCTTGAATAGATTGTTTATACAAGAAAATAACGGTTTTC---------ATTTTA-AACAAA---------CAccaattttctagttttgcaGAGTTTCTG-TATCTTACCTTTGGAATTTCTTCAATCAAACTGGTACGAGAATTAGAGCGGACCACTTGTACTTTAGAGTtgctaaaa------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   337059 294 - 33334924 -------------------AAGTATTCAATCGGAGgagtttcaaatgtttcaaatgctcaaaaaa------atgaga------agaagtaCACACGTTCACCTTACCAACAAC-GAGACTATACGTATGTGCCTCTACGTTTCCAACGTCCAATTATAAACTTCTAAATTCGAATCACAACcttt---atcatttt--------atttattt--gctTTG---------CTTTGATGATGAA-------------TACTTCCCTTTGAAATGATGTTTTTT-AAACTTACCTTTGGAATTTCTTCAATCAAACTGGTACGCGAATTTGATCTAACAACTTGTACTTTTGAGttactgaaaat----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1378198 313 +  4147112 -------------------aatttaaaaaatgtaggAGTATCAA--GATTTGAATAgt--aaaac------ttcaga------agaagtaCACACGTTTACCTTACCAATAAC-GAGACTACACGTATGTGCCTCTACGTTTCCAACGTCCAATTAAATACTTCTAAATTCAGGTAGgaaggttt---ttcaattt--------tgactttA--GATTTAGAAAATAGTCATTGATGGCCAAAATAAAACCTATTAACGTTTgtttgaaaagtgaactttg-AAACTGACCTTTGGAATTTCTTCGATCAAACTGGTACGGGAATTTGATCTGACAACTTGTACTTTGGAGTTActgaaaaac---
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17545   30698 267 +   227596 ------------------------------TGCA-CTTTTTTAGAAGTTTATCA---CTCATAAT------ATTGG-------ATAAGAGCACACGTCTACCTTACCAGTTT--GAAACTATACATAAGTTCCTCTACGTTTCCAACGAccaattaaatttttctaaaatta----------------ttggtttt--------gtttgttt--gtttat---------atttca-----------aaaatgagaTATATTTAAACCAAATTCAGATTCAA-AATATTACCTTAGGGATCTCCTCAATGAGACTGGTTCGGGAATCAGTACGTATCACTTGGTTGTTTGGGTTGCTGAAAATC---
i caeJap4.Scaffold17545 C 0 I 4

a score=-2549.000000
s ce10.chrX             3037511 26 + 17718866 AAATTGCTCTGCTGGAATTTCTTTTG
s cb4.chrX              8086720 25 + 21540570 -aaatggatcTTAGGAATTTCTCATG
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   233709 25 -  4500979 -ataaatatttatgaaagaatcgaaa
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   337353 25 - 33334924 -aattgaaattatagaatttcaaaag
i caeSp111.Scaffold629  C 0 I 4
s caeJap4.Scaffold17545   30969 25 +   227596 -ACattgaatattgtgttttcaatcg
i caeJap4.Scaffold17545 I 4 C 0
e caePb3.Scfld02_0      1378511 27 +  4147112 I

a score=63852.000000
s ce10.chrX             3037537 134 + 17718866 --------------AATA-------------ACTTACTTTTGCATTA-----------------------------------------------------------------------------TCTGAGAA----------------------------------------------------------GAATTGTAGGCGAGGAGGAGATCTGCAGCAGTGATTTCACAGAAAACACATTCGTAAAGGATGACGGTATCGAAGTCCGGAATGAAACCGATTGACTGAAATAGTT
s cb4.chrX              8086754 127 + 21540570 --------------ATTA---------------TTACTTTTGCATGA-----------------------------------------------------------------------------TTTGAGAG----------------------------------------------------------GAGTTGTAGGCGAGCAGAAGATCAGGAGCAGTAATTTCGCAAAACTTACATTCGTAGAGAATCACTGCATCAAAGTCCGGAATGAACCCGATGGTCTGAAA-----
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   233742 127 -  4500979 ---------------------------------tTACTTTTGCATTA-----------------------------------------------------------------------------TTTGAGAC----------------------------------------------------------GAATTGAAAGCAAGAAGTAAATCAGATGCACTGAATTCACAGAAGATGCATTCGTACAAAATGACAGTGTCGAAGTCTGGCACAAATCCGATTGTCTGAAATA-TT
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   337382 129 - 33334924 --------------aATG-------------CCTTACTTTTGCATGA-----------------------------------------------------------------------------Tttgagaa----------------------------------------------------------gaattgaaagcAAGGAGGAGATCAGAGGCAGTGAATTCGCAGAATATGCACTCGTACAAGATAACAGTATCAAAATCTGGCACGAAGCcaattgactgaaa-----
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1378538 129 +  4147112 --------------aata-------------acttacttttgcataa-----------------------------------------------------------------------------tttgagaa----------------------------------------------------------gaattgaaggCGAGAAGGAGATCAGATGCAGTGAACTCGCAGAAAATGCACTCGTACAGGATAACAGCATCGAAGTCTGGCACAAAGCcaattgactgaaa-----
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17545   30994 296 +   227596 agttgcagcatgagaacgcgaaactccgcccacttatttatgcGCGAGTATGCAAGCATAGTGCcgtgtgaagagacgcagacaaaaaagggatagaacACGcaagttttcatgatgcaactcgtttgaaaacacaataaatagatcaataggaaaaaaaaataataaaacgtaCTTGACAAGTTGGCTCGAGTTGAAGGCCAAAAGCAAATCAGCAGCGGAAATTTCACAGAATGTGCATTGCGAGACGATGGAGGCGTCAAAATCAGGAACAAAGCCAACGGTCTGAAGGTGTT
i caeJap4.Scaffold17545 C 0 I 33

a score=-4467.000000
s ce10.chrX             3037671 12 + 17718866 TA-----GTTGAATTTT-
s cb4.chrX              8086881 12 + 21540570 -A-----gagggaaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   233869 13 -  4500979 CA-----AGTTGCGATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   337511 11 - 33334924 -a-----attgaatgtt-
i caeSp111.Scaffold629  C 0 I 60
s caePb3.Scfld02_0      1378667 16 +  4147112 -atatacaatttATGTT-
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17545   31290 33 +   227596 I

a score=726.000000
s ce10.chrX             3037683 2 + 17718866 TT
s cb4.chrX              8086893 2 + 21540570 tt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   233882 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 I 277
s caePb3.Scfld02_0      1378690 2 +  4147112 ct
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17545   31290 33 +   227596 I
e caeSp111.Scaffold629   337522 60 - 33334924 I

a score=391.000000
s ce10.chrX             3037685 3 + 17718866 AAA
s cb4.chrX              8086896 3 + 21540570 aaa
i cb4.chrX              I 1 I 262
s caePb3.Scfld02_0      1378692 3 +  4147112 ata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   31290 33 +   227596 I
e caeSp111.Scaffold629   337522 60 - 33334924 I
e caeRem4.Crem_Contig0   233884 277 -  4500979 I

a score=892.000000
s ce10.chrX             3037688 39 + 17718866 AAGGCTTTTGGATATTTTTTGTGAAGTCATATTATGAAA
s caePb3.Scfld02_0      1378695 38 +  4147112 aaaatatttcga-attttctccgAAATTCTATTTCGGAA
i caePb3.Scfld02_0      C 0 I 211
e caeJap4.Scaffold17545   31290 33 +   227596 I
e cb4.chrX              8086899 262 + 21540570 I
e caeSp111.Scaffold629   337522 60 - 33334924 I
e caeRem4.Crem_Contig0   233884 277 -  4500979 I

a score=0.000000
s ce10.chrX             3037727 604 + 17718866  
e caePb3.Scfld02_0      1378733 211 +  4147112 I
e caeJap4.Scaffold17545   31290  33 +   227596 I
e cb4.chrX              8086899 262 + 21540570 I
e caeSp111.Scaffold629   337522  60 - 33334924 I
e caeRem4.Crem_Contig0   233884 277 -  4500979 I

a score=617.000000
s ce10.chrX             3038331 179 + 17718866 TTGGAAATGTGTTCTGACGGAAAG---GCGCAATTTTCTGCAGAACCTCAATGAAACAAGTTGGTGGACTG-----GGGACCAATGAATTATTCCCAGCTACATAGCTTATTAGAATTATTTGTGTGTTTTGATATTATTTGCAAAAAGAAATGCCCTATTAAAATTTGCACTACATTTCGCTGCTA
s caeSp111.Scaffold629   337582 159 - 33334924 TTTAAATTGTGGTCCGATgcaaaatttgagaaattttcggaaGAGCATC---GAAACACATATTTTAGCAGTTTCCAGAAACGattaattattccattttatttgaataattagcatt-ttcctctttttctatttctttttcaatca----ttctttcttAAAGTT--------------------
i caeSp111.Scaffold629  I 60 C 0
e caePb3.Scfld02_0      1378733 211 +  4147112 I
e caeJap4.Scaffold17545   31290  33 +   227596 I
e cb4.chrX              8086899 262 + 21540570 I
e caeRem4.Crem_Contig0   233884 277 -  4500979 I

a score=-59.000000
s ce10.chrX             3038510 3 + 17718866 TCC
s caeSp111.Scaffold629   337741 2 - 33334924 -CA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1378944 3 +  4147112 TTC
i caePb3.Scfld02_0      I 211 C 0
e caeJap4.Scaffold17545   31290 33 +   227596 I
e cb4.chrX              8086899 262 + 21540570 I
e caeRem4.Crem_Contig0   233884 277 -  4500979 I

a score=1910.000000
s ce10.chrX             3038513 2 + 17718866 AC
s cb4.chrX              8087161 2 + 21540570 ac
i cb4.chrX              I 262 C 0
s caeRem4.Crem_Contig0   234161 2 -  4500979 AC
i caeRem4.Crem_Contig0  I 277 C 0
s caeSp111.Scaffold629   337743 2 - 33334924 AC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1378947 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   31290 33 +   227596 I

a score=390660.000000
s ce10.chrX             3038515 512 + 17718866  
s cb4.chrX              8087163 550 + 21540570  
i cb4.chrX              C 0 I 193
s caeRem4.Crem_Contig0   234163 529 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 271
s caeSp111.Scaffold629   337745 526 - 33334924  
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1378949 532 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545   31323 514 +   227596  
i caeJap4.Scaffold17545 I 33 C 0

a score=91.000000
s ce10.chrX             3039027 1 + 17718866 t
s caeJap4.Scaffold17545   31837 1 +   227596 T
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1379481 1 +  4147112 I
e cb4.chrX              8087713 193 + 21540570 I
e caeSp111.Scaffold629   338271 1 - 33334924 I
e caeRem4.Crem_Contig0   234692 271 -  4500979 I

a score=64.000000
s ce10.chrX             3039028 4 + 17718866 ttaa
s caeSp111.Scaffold629   338272 4 - 33334924 ATAT
i caeSp111.Scaffold629  I 1 I 9
s caePb3.Scfld02_0      1379482 4 +  4147112 ttaa
i caePb3.Scfld02_0      I 1 I 221
s caeJap4.Scaffold17545   31838 4 +   227596 CTGG
i caeJap4.Scaffold17545 C 0 I 1
e cb4.chrX              8087713 193 + 21540570 I
e caeRem4.Crem_Contig0   234692 271 -  4500979 I

a score=955.000000
s ce10.chrX             3039032 5 + 17718866 aaatt
s caeSp111.Scaffold629   338285 5 - 33334924 aaatt
i caeSp111.Scaffold629  I 9 I 214
s caeJap4.Scaffold17545   31843 5 +   227596 AAAGT
i caeJap4.Scaffold17545 I 1 C 0
e caePb3.Scfld02_0      1379486 221 +  4147112 I
e cb4.chrX              8087713 193 + 21540570 I
e caeRem4.Crem_Contig0   234692 271 -  4500979 I

a score=539.000000
s ce10.chrX             3039037 12 + 17718866 ttttattGCACA
s caeJap4.Scaffold17545   31848 12 +   227596 TTTCACGGCata
i caeJap4.Scaffold17545 C 0 I 658
e caePb3.Scfld02_0      1379486 221 +  4147112 I
e cb4.chrX              8087713 193 + 21540570 I
e caeSp111.Scaffold629   338290 214 - 33334924 I
e caeRem4.Crem_Contig0   234692 271 -  4500979 I

a score=0.000000
s ce10.chrX             3039049 1040 + 17718866  
e caePb3.Scfld02_0      1379486  221 +  4147112 I
e caeJap4.Scaffold17545   31860  658 +   227596 I
e cb4.chrX              8087713  193 + 21540570 I
e caeSp111.Scaffold629   338290  214 - 33334924 I
e caeRem4.Crem_Contig0   234692  271 -  4500979 I

a score=244.000000
s ce10.chrX             3040089 19 + 17718866 CTTAATGTAGAACATATGT
s caeRem4.Crem_Contig0   234963 19 -  4500979 CTTTATGTTCACTATAGTC
i caeRem4.Crem_Contig0  I 271 C 0
e caePb3.Scfld02_0      1379486 221 +  4147112 I
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8087713 193 + 21540570 I
e caeSp111.Scaffold629   338290 214 - 33334924 I

a score=906.000000
s ce10.chrX             3040108 13 + 17718866 AGATGTAAAATTC
s caeRem4.Crem_Contig0   234982 11 -  4500979 AGATGGAAAAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1379707 11 +  4147112 AGATAAAAAAT--
i caePb3.Scfld02_0      I 221 C 0
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8087713 193 + 21540570 I
e caeSp111.Scaffold629   338290 214 - 33334924 I

a score=9773.000000
s ce10.chrX             3040121 42 + 17718866 TGGTTTTTGAAGTATTGTAGCCTTTCTTGAAAACTCTCCATG
s caeRem4.Crem_Contig0   234993 36 -  4500979 TGGTTCTCGAACTTTCAAAAGC------AAAAACTTCTCCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   338504 36 - 33334924 TGGTCCTCGAACTTTTGAAAGC------GAAAACTTTCGCTG
i caeSp111.Scaffold629  I 214 C 0
s caePb3.Scfld02_0      1379718 35 +  4147112 -GGTCCTCGAACTTTCGAAAGC------AAAAACTTCTGCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8087713 193 + 21540570 I

a score=386576.000000
s ce10.chrX             3040163 892 + 17718866  
s cb4.chrX              8087906 861 + 21540570  
i cb4.chrX              I 193 C 0
s caeRem4.Crem_Contig0   235029 890 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   338540 880 - 33334924  
i caeSp111.Scaffold629  C 0 I 193
s caePb3.Scfld02_0      1379753 890 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   31860 658 +   227596 I

a score=273.000000
s ce10.chrX             3041055 1 + 17718866 A
s cb4.chrX              8088767 1 + 21540570 a
i cb4.chrX              C 0 I 160
s caePb3.Scfld02_0      1380643 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   31860 658 +   227596 I
e caeSp111.Scaffold629   339420 193 - 33334924 I
e caeRem4.Crem_Contig0   235919 0 -  4500979 C

a score=-1805.000000
s ce10.chrX             3041056 22 + 17718866 TTTGAATAGAAGCTAGGAAAAA------------
s caeRem4.Crem_Contig0   235919 20 -  4500979 ----aataaagagtaAGGAAGTTG----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1380644 19 +  4147112 ---------------GGGAAGTTGCTGGGAAAGA
i caePb3.Scfld02_0      C 0 I 161
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8088768 160 + 21540570 I
e caeSp111.Scaffold629   339420 193 - 33334924 I

a score=963.000000
s ce10.chrX             3041078 30 + 17718866 CTCGGAAATGAAATGTTTTCAAACTTATTT
s caeRem4.Crem_Contig0   235939 26 -  4500979 CTCGGAAAGAAAACG----CAAGTTCGttt
i caeRem4.Crem_Contig0  C 0 I 136
e caePb3.Scfld02_0      1380663 161 +  4147112 I
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8088768 160 + 21540570 I
e caeSp111.Scaffold629   339420 193 - 33334924 I

a score=0.000000
s ce10.chrX             3041108 839 + 17718866  
e caePb3.Scfld02_0      1380663 161 +  4147112 I
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8088768 160 + 21540570 I
e caeSp111.Scaffold629   339420 193 - 33334924 I
e caeRem4.Crem_Contig0   235965 136 -  4500979 I

a score=494.000000
s ce10.chrX             3041947 15 + 17718866 AGTATGTACCTGTTC
s caeRem4.Crem_Contig0   236101 15 -  4500979 AGGATGTGCTCAATC
i caeRem4.Crem_Contig0  I 136 I 2
e caePb3.Scfld02_0      1380663 161 +  4147112 I
e caeJap4.Scaffold17545   31860 658 +   227596 I
e cb4.chrX              8088768 160 + 21540570 I
e caeSp111.Scaffold629   339420 193 - 33334924 I

a score=4137.000000
s ce10.chrX             3041962 8 + 17718866 AAAAGTCA
s cb4.chrX              8088928 8 + 21540570 AAAGGTCA
i cb4.chrX              I 160 C 0
s caeRem4.Crem_Contig0   236118 8 -  4500979 AAAGGTCA
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1380824 8 +  4147112 AAAGGTCA
i caePb3.Scfld02_0      I 161 C 0
e caeJap4.Scaffold17545   31860 658 +   227596 I
e caeSp111.Scaffold629   339420 193 - 33334924 I

a score=2874.000000
s ce10.chrX             3041970 4 + 17718866 ACTA
s cb4.chrX              8088936 4 + 21540570 ACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   236126 4 -  4500979 ACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1380832 4 +  4147112 ACTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   32518 4 +   227596 ACTT
i caeJap4.Scaffold17545 I 658 C 0
e caeSp111.Scaffold629   339420 193 - 33334924 I

a score=196580.000000
s ce10.chrX             3041974 190 + 17718866 ACCCTCTTCCTCTGCCGTTTTTTCCTGTGCACATTATCGCACACTGCATCAGTTTCATCAATGATTTCGCACTGAATGATTTCCTCAATGATGTCCTCGAGGGTAATCAGTCCACAGAGCTCGTAAATCGGGTCTTTATCTTCTTGCTCGACGAGTCGCTCGACCAGCGCCATGTGATATTCGCCCTGAA
s cb4.chrX              8088940 190 + 21540570 ACCTTCTTCCTTTGTCGTTTCTTTCTGTGCACATTGTCACAGACTGCATCCGTTTCGTCGATGATCTCACACTGGATGATCTCTTCGATAATGTCCTCAAGCGTGATTAATCCGCAGAGTTCGTACACCGGATCCTTATCTTCTTGTTCGACGAGCCTTTCCACCAACGCCATATGATACTCACCCTGGA
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   236130 190 -  4500979 ACCTTCTTCCGTTGTCTCTTCTTTCTGTGCACATTGTCACACACAGCATCTGTTTCATCGATGATCTCACATTGAATGATTTCCTCTATAATGTCCTCAAGAGTAATCAATCCACACAGCTCATAAATCGGATCTTTATCTTCTTGCTCAACGAGACGCTCCACCAACGCCATGTGATATTCTccctaaa
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold629   339613 190 - 33334924 ACCTTTTTCCGttgtctcttctttctgtGCACATTATCGCATACAGCATCAGTTTCATCGATGATCTCACACTGGATGATTTCTTCAATGATGTCCTCGAGAGTAATCAATCCGCACAGCTCATAAATCGGATCTTTATCTTCTTGCTCGACGAGTCTCTCAACCAACGCCATATGATATTCTCCctgga
i caeSp111.Scaffold629  I 193 I 1
s caePb3.Scfld02_0      1380836 190 +  4147112 ACCTTCTTCCGATGTCTCTTCTTCCTGTGCACATTATCACAGACTGCATCTGTTTCATCGATGATCTCACACTGGATGATTTCTTCAATGATATCTTCAAGAGTAATCAATCCACACAGCTCATAAATCGGATCTTTATCTTCTTGCTCAACAAGACGCTCGACCAAAGCCATGTGATATTCTCCCTGGA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545   32522 190 +   227596 ACTTTCTTCCTCTGCCGTTTCTTTCTGTTGACATTATCCGTGACTGCATCAGTTTCGTCGATGATCTCGCACTGGATAATTTCCTCAATGATATCCTCCAAAGTGATCAGCCCGCAAAGTTCATAAACAGGATCTCTATCTTCTTGCTCCACGAGTTTCTCCACAAGAGCCATGTGGTATTCTCCCTGAA
i caeJap4.Scaffold17545 C 0 C 0

a score=-2493.000000
s ce10.chrX             3042164 29 + 17718866 CTCTAGTAGATTAAATGTTTTTTTTCTAG
s cb4.chrX              8089136 27 + 21540570 ATCT--CAGATTAAAACAACTTTCGCACC
i cb4.chrX              I 6 I 3
s caeJap4.Scaffold17545   32712  4 +   227596 ------------------ATTT-------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1381026  1 +  4147112 I
e caeSp111.Scaffold629   339803  1 - 33334924 I
e caeRem4.Crem_Contig0   236320 21 -  4500979 I

a score=79282.000000
s ce10.chrX             3042193 266 + 17718866 ACACATGAA--------GTTGAAAATATCTTTTGAAAAGCTTTTTTTCAAGCTTTTAAAAACCGGGTAAGATTGATCCACT-------TAATTGAATTGAGTCTTTGGAAGCGAGGCGTTCTTACCCGTTTAAATTCTTCCAACATATTTCGGAGTGGCATGTCTACCAACACACGACGAACTTCATGGTTGTAAATTGAGGCGATTTTCATGACATTGTGATTATCGTCAGGATCGAGCAATGCGAGATCTTTTACAAACAGAAGTGCGACAATGTTCTT
s cb4.chrX              8089166 240 + 21540570 ----ATGAGAGAGCTTGATCGAGGAGA-----GAGATAGTCATTTATCTTTCTCTTCCATCTTTCTCAAAat-----aaat-------ctttcga--aaaatcta------------------acCCGCTTGAACTCCTCGAGCATAGTACGGAGAGGCATGTCTTCTAGCACACGGCGTACTTCGTGGTTATAGATGTTGGCGATTTTCATGACGTTTTGTTGATCGTTAGGATCAAGCAGCGCAAGATCTTTCACGAACAGAAGCGCAACCACGTTTTT
i cb4.chrX              I 3 I 67
s caeRem4.Crem_Contig0   236341 209 -  4500979 ACACCTGGGA-------ATTGAGAAGA------------------------------TATCTTCATCGGAAT-------CT-------TTTCCCA--TCCACCT-------------------ACCCGTTTGAACTCTTCAAGCATTGTGCGAAGAGGCATATCCTCCAAAACACGTCTAACTTCATGGTTATAAATAGATGCTATCTTCATCACATTGTGACTATCAGCTGGATCCAGAAGTGCAAGATCTTTTACGAAAAGGAGAGCAATTACGTTTTT
i caeRem4.Crem_Contig0  I 21 I 3
s caeSp111.Scaffold629   339804 200 - 33334924 ----------------------------------aacaacaattttcGCACCCCCTGAGTCAGTGGTTAGAT-------TT------------------------------------G----TACCCGTTTGAATTCTTCCAACATATTACGAAGGGGCATGTCGACAAGTACACGTCTCACTTCATGATTATATATCGATGCAATTTTCATAACGTTATGACTATCGGCAGGATCTAATAATGCAAGATCTTTTACGAAAAGCAAAGCTACTACGTTTTT
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1381027 229 +  4147112 ----------------------------------AAGAACAACTTTCACACCA---GTATCTGTGGTTGGAT-------CTTATAggatttttga--tatctctc--aaTGTGAAACG----TACCCGTTTGAACTCTTCGAGCATGTTTCGGAGGGGCATGTCAACTAATACACGTCGGACTTCATGATTATAAATTGAAGCAATTTTCATCACATTATGACTATCAGCGGGGTCCAACAATGCAAGATCTTTTACAAAAAGAAGTGCAATTACATTTTT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545   32716 199 +   227596 ---------------------------------AAATTGtagttttttt--------catcattcaTTTTAT-------GT----------------TAAATCTT------------------ACTCGTTTGAATTCTTCTAGCATGGTTCTGAGTGGCATATCAATCAAGACTCGACGGACTTCGTGATTGTAGAGATTGGCGATGTTCATCACTTTGAGATTTTCTTGCGGATCCAGAAGAGCAAGGTCTTTCACGAAGAGCAGAGAAACCACGTTTTT
i caeJap4.Scaffold17545 C 0 C 0

a score=1812.000000
s ce10.chrX             3042459 14 + 17718866 ACGGTCATCTGAAA
s caeRem4.Crem_Contig0   236553  9 -  4500979 GTCatcatc-----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   340004 14 - 33334924 TCGATCCtctgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1381256 14 +  4147112 CCTATCTTCTGAAA
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17545   32915 14 +   227596 AGGATCGCCtggaa
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8089406 67 + 21540570 I

a score=-2012.000000
s ce10.chrX             3042473 14 + 17718866 TATTGATTTTATTT--
s caeRem4.Crem_Contig0   236562 11 -  4500979 ---taaaaatttca--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   340018 14 - 33334924 taataataataata--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   32929 12 +   227596 ----aacattttcttt
i caeJap4.Scaffold17545 C 0 I 34
e caePb3.Scfld02_0      1381270 42 +  4147112 I
e cb4.chrX              8089406 67 + 21540570 I

a score=-411.000000
s ce10.chrX             3042487 5 + 17718866 ATTTA-
s caeRem4.Crem_Contig0   236573 6 -  4500979 gattaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   340032 5 - 33334924 attca-
i caeSp111.Scaffold629  C 0 I 24
e caePb3.Scfld02_0      1381270 42 +  4147112 I
e caeJap4.Scaffold17545   32941 34 +   227596 I
e cb4.chrX              8089406 67 + 21540570 I

a score=644.000000
s ce10.chrX             3042492 11 + 17718866 TTTTCTCTGAT
s caeRem4.Crem_Contig0   236579 11 -  4500979 tttttttcgat
i caeRem4.Crem_Contig0  C 0 I 22
e caePb3.Scfld02_0      1381270 42 +  4147112 I
e caeJap4.Scaffold17545   32941 34 +   227596 I
e cb4.chrX              8089406 67 + 21540570 I
e caeSp111.Scaffold629   340037 24 - 33334924 I

a score=0.000000
s ce10.chrX             3042503 591 + 17718866  
e caePb3.Scfld02_0      1381270  42 +  4147112 I
e caeJap4.Scaffold17545   32941  34 +   227596 I
e cb4.chrX              8089406  67 + 21540570 I
e caeSp111.Scaffold629   340037  24 - 33334924 I
e caeRem4.Crem_Contig0   236590  22 -  4500979 I

a score=2172.000000
s ce10.chrX             3043094 15 + 17718866 TCACCCCCAAATGTC
s caeRem4.Crem_Contig0   236612 15 -  4500979 TTACTTCCCAATccc
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold629   340061 15 - 33334924 TCATCATCTtgtgtc
i caeSp111.Scaffold629  I 24 C 0
s caePb3.Scfld02_0      1381312 15 +  4147112 TCATCGTCAAGTCCC
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold17545   32941 34 +   227596 I
e cb4.chrX              8089406 67 + 21540570 I

a score=910.000000
s ce10.chrX             3043109 1 + 17718866 T
s cb4.chrX              8089473 1 + 21540570 T
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   236627 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   340076 1 - 33334924 t
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1381327 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   32941 34 +   227596 I

a score=221416.000000
s ce10.chrX             3043110 304 + 17718866 TACTTTCGTAAATCGGAATACGCGTATAACCCATATCTAAAATCTGTGTCACCATTCCAGCGCCAAGTGTCAACGTATGGGGCAACATAAAAATGTCCTCGTAACGGGTCATCGCGTGGGCGACGGTTTTGTCGTAAAGCTCGAGTGCACCCAATACCATTTTAAATTCGTCAGATTGCCCTCCAATGATGCTCTTCTCGGATAACTTGAGCATTTCGACAAGCTTGTTCCGCTCCAACGAGCGTGTTAGCTCTTCTTTCAAGAAGATATCGAGGACCTGCAAAAACATGC-A--AACATTTGAAAT
s cb4.chrX              8089474 294 + 21540570 TGTTTTCAAAGACTGGAATTCGAGTATATCCCATATCCAAGATTTGTTGAACCATGTCGGCACTGAGATTCAAAGTATCCGGAAGCATGAACATATCCTCGTAACGTGTCATCGCTGTTGCCACAGTTTTATCGTAGAGCTCCAATGCTCCTAGGACCATCTTGAACTCGTCCGTTTGGCCGCCGATGATGGTTTTCTCGGACAACTTGAGCATTTCGACGAGTTTATTTCTCTCCAAAGAACAAGTGAGCTCTTCTTTTAGGAACACATCCAGAAGCT----------Ga-a--agcatttcagaa
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   236628 302 -  4500979 tgttttcaaaaattggaattctaGTGTATCCCATATCCAAAATCTGAGTAACCATATCTGCACTAAGATTCAAAGTATCCGGAAGCATGAAGATATCTTCGTAGCGAGTCATGGCGTGAGCGACTGTTTTATCGTACAATTCCAGAGCACCCAACACAATCTTAAACTCATCGGATTGACCTCCGATCACGCTTTTCTCCGATAATTTCAGCATTTCAACAAGCTTGTTTCGCTCCAATGACCGCGTAAGCTCTTCTTTCAGGAACATGTCGAGAATCTATaaaaaa--aa-a--GGCAATGCTGAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   340077 290 - 33334924 tcttctcataaATTGGAATACGGGTATACCCCATATCCAGAATCTGAGTAACCATATCAGCGCTGAGATTCAATGTATCGGGTAACATGAAAATATCTTCATAACGTGTCATTGCATTTTCCACAGTTTTGTCGTACAACTCAAGTGCACCCAgaaccattttgaactcaTCGGATTGGCCTCCGATGACGCTTTTCTCGGATAACTTGAGCATCTCAACAAGCTTGTTTCGCTCCAATGATCTTGTAAGCTCTTCTTTCAGGAACATATCCAGGATCT----------gcaa--aattctt-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1381328 289 +  4147112 TCTTCTCATAAATCGGAATACGTGTATATCCCATTTCGAGAATCTGAGTAACCATATCAGCGCTGAGATTCAATGTATCAGGTAACATAAATATATCTTCATAACGAGTCATGGCATGAGCAACTGTTTTATCGTACAGCTCCAATGCACCTAAAACCATTTTGAACTCATCGGATTGGCCACCAATGACGCTTTTCTCCGATAACTTGAGCATCTCGACAAGTTTGTTACGCTCTAGTGACCGTGTGAGCTCTTCTTTCAGGAACATGTCCAAGATCT----------GC-A--AATTTTC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   32975 293 +   227596 TACCTTCATAAATGGGAATTCTGGTGTATCCCATTTCCAGAATCTGCGTGACCATCGTGGGATTGAGCTCCAAGTAAGATGGAACCGAGAAAATGTCTTCAAAACGGGTCATTGAATGGGCTACGGTTTTATCGTAAAGCTCAAGGGCGCCCAACACCATTTTGAATTCATCAGACTGCCCTCCAATAACTGTTTTTTCGGACATTTTTAACATCTCAACAAGTTTGCTTCTTTCTAACGATCTTGTCAACTCTTCTTTTAGGAAGAGGTCGAGAACCT----------GA-ACCAACATTTGA---
i caeJap4.Scaffold17545 I 34 C 0

a score=-10920.000000
s ce10.chrX             3043414 54 + 17718866 TATTATTTTTT-----GAATAAAGGTCAAATTCCTGGCTGATAATAGA---AAATTTATGAA
s caeRem4.Crem_Contig0   236934 23 -  4500979 ------------------A-A------ACGTCATT---TGAATATTAAATC-----------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   340367 42 - 33334924 ttttctgttct-----ggA-ACGGGTCACGTCATTTTGTGATGATAAT--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1381617 42 +  4147112 CATCGTGTTTT-----GGA-ACGCATTACGTCATTGAATAAAGATCAT--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   33268 42 +   227596 -GTTTCGTTTTGCAGAGGA-AACGGTTACTGCTTACCATGGAAA------------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8089768 28 + 21540570 I

a score=56126.000000
s ce10.chrX             3043468  96 + 17718866 ACCTTAGATATTGGCCACGTCAGAGGATACATCAGGAAAAGGAGAACTTGTGTGATTGGAATTGTTCTTGCACCAATCGGGAGTCCTAGCCTGAGA----------------
s cb4.chrX              8089796  96 + 21540570 ACTTTGGAAATAGGCCATGTTAAAGGATACATTAGGaaaaaaaGCACTTGAGTGATTGGAATAGTATGCGCTCCGATAGGAAGTCCCATTCTGAAA----------------
i cb4.chrX              I 28 I 808
s caeRem4.Crem_Contig0   236957  96 -  4500979 ACCTTGGATATGGGCCAGGTCAAAGGCCACATTAAGAAAAGAAGCACTTGTGTTATAGGTATTGTTGTTGCTCCAATTGGTAACCCGAGTCTGTAA----------------
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold629   340409  96 - 33334924 ACCTTAGAGATAGGCCAAGTCAGAGGCCACATAAGGAAGAGCAGAACTTGGGTAATAGGAATAGTTGTCGCTCCAATTGGGAGACcaagtctgaaa----------------
i caeSp111.Scaffold629  C 0 I 9
s caePb3.Scfld02_0      1381659  96 +  4147112 ACTTTGGAAATTGGCCAAGTCACTGGGAACATGAGGAAGAGAAGTACTTGAGTTATAGGTATTGTTGTAGCACCGATTGGGAGTCccagtctgaaa----------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17545   33310 102 +   227596 ----TCAAAATT------GTCAGAGGCCATGTGAGAATGAGCAGTAATTGAGTTATTGGGACCGTTTTGGATCCTATTGGCAAACCCCATctgtatttaatttttagttAGT
i caeJap4.Scaffold17545 C 0 C 0

a score=-9501.000000
s ce10.chrX             3043564 35 + 17718866 TTCAAAA--TTATAAGTACACACAGGTTACGTAAACC-----------
s caeRem4.Crem_Contig0   237069 21 -  4500979 tccaaaaatttgaa----------------aaagacc-----------
i caeRem4.Crem_Contig0  I 16 I 13
s caeSp111.Scaffold629   340514 19 - 33334924 ttcgTGA--TTGAT----------------AAAGATA-----------
i caeSp111.Scaffold629  I 9 I 8
s caePb3.Scfld02_0      1381759 23 +  4147112 t-----a--ttgagaaaaca-----gt--aaaagatA-----------
i caePb3.Scfld02_0      I 4 I 15
s caeJap4.Scaffold17545   33412 29 +   227596 ------A--TCAAA-----------GTTATAAAAATAGTATGTAGACT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8089892 808 + 21540570 I

a score=224641.000000
s ce10.chrX             3043599 334 + 17718866 CTTACTTCACACATAATGCTTGTGGAATGATTTCTCCAAACACGACAATACAAGATGTCGCCGCAACAAGTACAGCAAACCCGCTGCCCACTAATTGGTCCATCAAAAGCGAAACGCCGACGTTTACAACTACGTTACCAATCAATAATGTGCACAACAGTTGATTTCCTTTTTTGCGAATTGGTAGAATTCTTCCAGCGTCCCTTTTTTCTTGTTCAGTACCACTTGCGATGTAAAGCTGAAGCTCATACGGAGACAGAGTCATCAATCCAAGATTGAGACCGGAGAACAAACCAGAGAAGCACAGAAGGATTAATAAACAGATCCACTGAAA
s cb4.chrX              8090700 334 + 21540570 CTTACTTCACACATAGAGCCTGTGGAATAATCTCTCCGAAGACGACGATTGCAGCTGTAGCTCCGAAAAGAACCCCGAGGCCAGTTCCAACGATCATGTCCATCAGCATAGATATTCCAACATTTACAATAACGTTTCCGATGATAAGAGTGCAGAGCAATTGATTCCCCTTCTTTCGAACTGGGAGTATTTTTTCGGAGTATCGTTTTTCGGAGTTCGTTCCACTTGCACGGTACAACTGAAGCTCGTAAGGTGAAATTGTCATTAGACCGATGTTGAGTCCCGAAAACAATGCCGAGCTGCATAACAAGAACGCTAGACAgatgatctgaaa
i cb4.chrX              I 808 I 27
s caeRem4.Crem_Contig0   237103 334 -  4500979 CTTACTTGACACAAACTGCCTGTGGAATAATTTCTCCGAATACAACGATTGCAGCAGTTGCACCAATAAGTACAAATAAACCAGTTCCCACAATGATATCCATCAACATAGAAACTCCGACGTTGACAATGACATTACCAATGAGTAGAGTACACAAAAGttggtttcctttttttctgatggGCAATATCTTAGCAGCGTATCGTTTTTCGTCTTCCGTTCCACTGGCAATATAAAGTTGCAGCTCATATGGTGAGAGTGTCATCAGACCCAAGTTGAGTCCAGAGAACAACCCGGAGAAACCAAGAAGAATCATCAAACAGATAATCTGAAA
i caeRem4.Crem_Contig0  I 13 I 3
s caeSp111.Scaffold629   340541 334 - 33334924 CTGACTTGACACATACTGCCTGAGGGATAATTTCTCCGAAGACCACAATGGCAGCAGTGGCTCCAATCAAAACAAACAGTCCAGTTCCAACAATGATATCCATCAGCATAGATACACCGACATTTACAATGACATTACCAATAAGGAGAGTACATAGTAATTgatttcctttctttcttatAGGTAAAATCTTATTGGCATaacgtttttcttgttctgtCCCACTTGCAATATAAAGCTGAAGTTCATATGGAGAGAGAGTCATCAATCCTAAATTCAATCCGGAGAACAATCCAGAGAAACAAAGAAGGGTTATGAGACATATCCACTGAAA
i caeSp111.Scaffold629  I 8 I 30
s caePb3.Scfld02_0      1381797 334 +  4147112 CTTACTTAACACATACTGCCTGTGGAATAATCTCTCCAAACACGACAATAGCTGCGGTGGCTCCAATCAGAACAAAAACTCCCGTTCCAACAATGATATCCATGAGCATTGATACTCCAACATTCACAATAACATTTCCAATAAGTAGAGTACACAACAGTtgatttcctttctttctaATTGGCAAAATTTTCTGAGCGTAACGTTTTTCTTGTGGCGTTCCACTGGCAATGTAGAGTTGAAGCTCGTAAGGAGACAGAGTCATTAGTCCAAGGTTCAAACCAGAGAACAATCCggagaaacaaagaagaatgaagaggcATGTACACTGAAA
i caePb3.Scfld02_0      I 15 I 1508
s caeJap4.Scaffold17545   33441 311 +   227596 --CACTTAACACAAAGCGCCTGAGGAATAATTTCACCAAACACAACGATACCAAAAGTGGCGCTGAGCAGCACGATATAACCACTTCCCAATATTTTGTCAAGTAAAAGTGAGACTCCCACATTGACAATGACGTTTCCAATGAGCAGGGTGCACAACAACTGATTTCCTTTCTTTCGCAATGGCAAAATGCGCTCGGCTGCACGTTTTTCTGCTTTAGTTCCACTTGCAATGTACAACTGAAGTTCGTATGGGGAAAGTGTCATGAGTCCCAAATTTAATCCGGAAAATAATCCGGAGAGGCAGAGAAGGAT---------------------
i caeJap4.Scaffold17545 C 0 C 0

a score=0.000000
s ce10.chrX             3043933 4 + 17718866 AAAG
e caePb3.Scfld02_0      1382131 1508 +  4147112 I
e caeJap4.Scaffold17545   33752 0 +   227596 C
e cb4.chrX              8091034 27 + 21540570 I
e caeSp111.Scaffold629   340875 30 - 33334924 I
e caeRem4.Crem_Contig0   237437 3 -  4500979 I

a score=-7419.000000
s ce10.chrX             3043937 139 + 17718866 CAATGAAATGAACTATAGTTAATTAAATGAGTTTTTAAAGTTTTTACACAATTGTTTTATGCTTTGATAATTTTGCTAATTTTACCACTAAACATGCTATCGAAAAATGTTCATCAAAAGAATGTTTTCCATGTCTACT
s caeRem4.Crem_Contig0   237440  80 -  4500979 ------------------------------------AGATTTTTTGCACA-------------TTgat--cttttcagattttagaaGCAGCTGTA-TACCgtgaaaactgtaatagaggcgcaccctctat-------
i caeRem4.Crem_Contig0  I 3 C 0
s caeJap4.Scaffold17545   33752  52 +   227596 -AATGAGAG---------------------------CAGGTATCtggaaaattgttgttt---ttgct--ttttgcttttctttt------------------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1382131 1508 +  4147112 I
e cb4.chrX              8091034  27 + 21540570 I
e caeSp111.Scaffold629   340875  30 - 33334924 I

a score=-2332.000000
s ce10.chrX             3044076 109 + 17718866 TGACTCTAGATACTTAAATGATCCACAAAAGTCATAGAAAAATatatagcagccgacacctcgtgagttcattcttaatgatgattacgactgtaactcaaaaaccata
s caeRem4.Crem_Contig0   237520  27 -  4500979 ------tagaTGC-------------------------------------------------------------------------GCCCCTGTAAT---ATAGGCGCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1382131 1508 +  4147112 I
e caeJap4.Scaffold17545   33804   0 +   227596 C
e cb4.chrX              8091034  27 + 21540570 I
e caeSp111.Scaffold629   340875  30 - 33334924 I

a score=-7749.000000
s ce10.chrX             3044185 161 + 17718866 ttttaaatggaaggtttatctaaaggaaataaaattcatcgtatatgatttttcattgttttttttaacatttcaactttttcAGCAACAGCTTAAATGTTGCAAAATTAAACATGGTTTTCTAATTATTAATGTTAATTCTATCGCTTATATCTGGAATC
s caeRem4.Crem_Contig0   237547 113 -  4500979 CCTGCAAGCGAAGGTTTA-------AAAATAGAGT------AGCATGCgtttctattacagtttttacggtattttgtTCTCAAGCAGAG----ATATATTCCA-----TCACATTGCTTTCCA------AATGATATTTT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17545   33804  75 +   227596 ttttaaa------gttta-------attATGAGAG----CAGGTATG--------------------------------CTTCAACAAAC--CGAAATGTAGCTAGGC-ATAAATGGCTCTGGAATC----------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1382131 1508 +  4147112 I
e cb4.chrX              8091034  27 + 21540570 I
e caeSp111.Scaffold629   340875  30 - 33334924 I

a score=602.000000
s ce10.chrX             3044346 3 + 17718866 AGA
s cb4.chrX              8091061 3 + 21540570 AGA
i cb4.chrX              I 27 C 0
s caeJap4.Scaffold17545   33879 3 +   227596 GGA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1382131 1508 +  4147112 I
e caeSp111.Scaffold629   340875 30 - 33334924 I
e caeRem4.Crem_Contig0   237660 0 -  4500979 C

a score=546.000000
s ce10.chrX             3044349 1 + 17718866 A
s cb4.chrX              8091064 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1383639 1 +  4147112 A
i caePb3.Scfld02_0      I 1508 C 0
s caeJap4.Scaffold17545   33882 1 +   227596 A
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   340875 30 - 33334924 I
e caeRem4.Crem_Contig0   237660 0 -  4500979 C

a score=189769.000000
s ce10.chrX             3044350 394 + 17718866 ACTCACCGAAAGCCATTTTGGCATATACTCATCAACGGGCGGAATTTCAGTGGTGACCATTGTGAACGGATCTTCTACTATAACAAACTGAGGGTTGGCATAAAACTTTTCTGACACGCAGAGTTTGAAACTGTCCTTTGATTCAGTGGTTCTGAA-TTA---AAACCATTTCATA-TTTACAAACTTT---TTTTCATCAAC-TC--ACTTTGGAAAGCTCATCTCAACAACGACACGAATGGGTGTCATAGAAGAAAAATCGGCTTCAAAGAAATGTGCCAAATCTTTACAAGACCCGTCTGCTGTGAAAGTGAGAGCTCCGATGTCTTGAAAATTTTGGCCGAACAGAACAACTCGAACATTCTTATTTGGGACAACGACGACATTGTGTTTTCTG-------------AAAGTA
s cb4.chrX              8091065 405 + 21540570 ACTTACCGATAGCCACCTTGGCATTGCATGCTCGGGTGGGGGAATTTCCGTTGTCACTGTAGTGAATGGATCTTCAATAACAGCAAATCGAGGTTCCGCATAATATTTTTCTGAGATACAAAGTTTAAATATGTCGGACTCCGCTGCTGTTCTAAAtgta---caattttttatt--ttatcgaA--------TTCTGTAAAGATCATACTTTGGGAAGGTAACTTCTGCTACCAGACGCAGATCCGTCATGGAAGAAAAGTCAGCCTCGAAAAAATGCCTCATATCCGTACAAGTTCCATCGGCGGTGAAAGTCAGAGCTCCAATATCTTGGAAGTTCTGACCAAACAGCACGACTCTAACATTTTGATTTGGAGCGATCACGACGTTGTGCTTTCTAGAACAATTCATGTCaacta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   237660 392 -  4500979 ACTCACCGCCAACCACATGGGCATTGCATTTTCTGTTGGAGGGATCTCAGTGGTTACAGTAGTGAAAGGATCTTCAACGATTGCAAATTGCGGTGCGGAGTAGAACTTTTCCGACACACAAAGTTTGAAAGTTGTGGTCTCTGCTGATGTTCTGAATATAA-CTAATTGTTTACCA-ATAACACA--------TTTAACAAGT----TACTTTGGGAAAATCATCTCTACTACCAAACGAGTAGTAGTCATTGATGAGAAGTCTGCCTCAAAGAAATGTTCCATGTCTTTACAAGTTCCATCAGCTGTGAAGGTGAGAGCTCCGATATCTTGGAAGTTCATTCCAAACAAAACAACACGTACTTCTTTATTGGGAACGATAACCACATTATGTTTTCTA------------TAAAATA
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold629   340905 392 - 33334924 ACTAACCGCCAGCCACATTGGCATTACATTGTCTGCTGGTGGAATTTCAGTTGTAACTGTTGTAAATGGATCTTCCAAGATAACAAACTGTGGTTTTGAGTAGAATTTCTCAGAAACACACAGTTTGAAGCTATCGGTTTCGGAAGCAGTTCTGAA-ATAG-CAATCATTTCTTTATATTC------------TTTATTATAT-TCGTACTTTGGGAAAGTCATTTGAACAACTAAACGTGTTGTTGTCATTGAAGAGAAGTCTGCTTctaaaaactcttccatatcTGAACAGGAACCATCTGCAGTGAAAGATAGAGCACCGAtatcttgaaaattcatcCCGAAAAGAACCACTCTCACTTCTTTGTTTGGAATGATAACTACATTATGCTTTCTG-----------GAAAACTA
i caeSp111.Scaffold629  I 30 C 0
s caePb3.Scfld02_0      1383640 394 +  4147112 ACTAACCGCAAGCCACATTGGCATCACATTATCGGCTGGAGGAATTTCAGTTGTGACTGTTGTGAATGGATCTTCCAGAATGACAAAATGAGGCTCGGAGTAGAACTTCTCGGAAACACATAACTTAAAACTGTCTGTCTCTGCTGCTGTCCTGTA-ACAA-ATAGCCTTGTAATAAGTTCCAGA--------TTCATTCAAC-TC--ACTTTGGGAAAATCATTTCCACAACAAGGCGAGTGGTAGTCATCGACGAGAAATcagcttccaaaaaatgttccataTCCTTACAGGATCCGTCAGCAGTAAATGACAGCGCACCAATATCTTGGAAGTTCATTCCAAAAAGAACAACACGGACTTCTTTGTTAGGGACAATGACCACATTgtgctttctg-----------aaaaaata
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   33883 360 +   227596 --------------------------------------------CATCTGTAGTTATCGTGGTGAAGGAATCTTCGATGACAGCAAACTTTGGATTTGCGTAGAATTTCTCGGAAACGCACAGCTTGAA------TACTTTTGCTTCTGACCTGAA-AAAGTTAAACTCCTTGACTTCttctacaatttttattttagctCGC-TC--ACGATGGGAATTTCATCTCTACAACAAGACGAATATTGGTCATCGATGAGAAGTCTGCCTCGTAGAAATGCTCCATATCAGTGCACGAACCATCAGCGGTAAAAGAAATGGCACCAATGTCTTGGAAATTCTGACCGAACAGGATCACACGGACCGCCTCGTTAGGCTTGATCACTACGTTGTGCcttctt----aattttttaaaatta
i caeJap4.Scaffold17545 C 0 C 0

a score=-12055.000000
s ce10.chrX             3044744 39 + 17718866 GGATTTTAAAAATTAGTATATATTCTAATCAGCCCCGTA--
s cb4.chrX              8091470 14 + 21540570 --------------------gatt-----ttttaaaatg--
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold629   341297 26 - 33334924 ------TCATTCT--GTATGGTTT-----TTGTGCTGTG--
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1384034 32 +  4147112 ------tgaaactaaGAATCAGTTC-AGCTTGTTGGGTG--
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17545   34243 34 +   227596 ------aaaatcaaaatattactt-tggtttttaaaattta
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   238052 32 -  4500979 I

a score=48599.000000
s ce10.chrX             3044783 102 + 17718866 TTACTTATTGTGTCCGAGAACAATGTTTTCAGTAGAAGAGGCGTGAGCTTCGAGGCGAAGTCCCGAAACTCGAACTTTTGATAAATGAAGTGATTCCGGTTT
s cb4.chrX              8091488 101 + 21540570 -AACCTGTTGTGTCCCATAACAATTTTATTGAAGGTTCCGACATTTGCTTCGAGACGCAGACCAGACACTTTCACCTTTGTCAGATGGTGAGGTTCTGGCTT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   238084 102 -  4500979 TCACCTGTTATGTCCCAAGACAATATTTTCTTTGACTCCGACATTTGATTCTAAACGCATACCAGACACTTTGACACTTGATAAATGTACATCTTCAGGTTT
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold629   341326  96 - 33334924 TTACTTATTATGTCCCAAAACAACTTTCT------CATCAACATTCGCTTCAAGACGTAAACCAGAAACTCGGACTTTAGCGAGATGTACTGATTCTGATTT
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1384069 102 +  4147112 TTACTTATTGTGTCCTAATACTACGTTCTCTGCGACGCCAACATTAGCTTCAAGTCTGAGTCCGGAGACTCTAACTTTTGCCAAGTGAAGAACTTCTGGTTT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545   34277 102 +   227596 ttacCGATTATGCCCCATAACCACATTTTCCGAAGAAAACACTTTGGCCTCTAAGCGAAGTCCTGCAACTCGCACTTTTGCAAGATGGTAGATTTCCGGTTT
i caeJap4.Scaffold17545 C 0 I 159

a score=1910.000000
s ce10.chrX             3044885 2 + 17718866 TG
s cb4.chrX              8091589 2 + 21540570 TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   238186 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   341422 2 - 33334924 TG
i caeSp111.Scaffold629  C 0 I 627
s caePb3.Scfld02_0      1384171 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   34379 159 +   227596 I

a score=59.000000
s ce10.chrX             3044887  6 + 17718866 ------AGGCTG
s cb4.chrX              8091591  6 + 21540570 ------GAGTTG
i cb4.chrX              C 0 I 1288
s caeRem4.Crem_Contig0   238188  6 -  4500979 ------CTGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1384173 12 +  4147112 GTGCAACTGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   34379 159 +   227596 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=-855.000000
s ce10.chrX             3044893 6 + 17718866 AACTTG-
s caeRem4.Crem_Contig0   238194 6 -  4500979 CATTTG-
i caeRem4.Crem_Contig0  C 0 I 58
s caePb3.Scfld02_0      1384185 6 +  4147112 -GAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   34379 159 +   227596 I
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=573.000000
s ce10.chrX             3044899 16 + 17718866 GCAGAATTGAAGGTTC
s caePb3.Scfld02_0      1384191 16 +  4147112 GAGGGGTCGGGGGTTC
i caePb3.Scfld02_0      C 0 I 146
e caeJap4.Scaffold17545   34379 159 +   227596 I
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I
e caeRem4.Crem_Contig0   238200 58 -  4500979 I

a score=0.000000
s ce10.chrX             3044915 54 + 17718866 CAATATCACAGAAGAGTTGACATTTAATAATCCTTTTGATGAGGTTGAATTGTC
e caePb3.Scfld02_0      1384207 146 +  4147112 I
e caeJap4.Scaffold17545   34379 159 +   227596 I
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I
e caeRem4.Crem_Contig0   238200 58 -  4500979 I

a score=-5185.000000
s ce10.chrX             3044969 682 + 17718866  
s caeRem4.Crem_Contig0   238258 407 -  4500979  
i caeRem4.Crem_Contig0  I 58 C 0
e caePb3.Scfld02_0      1384207 146 +  4147112 I
e caeJap4.Scaffold17545   34379 159 +   227596 I
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=-392.000000
s ce10.chrX             3045651 19 + 17718866 CAAAAGATTGT-CAGTGTAC-----
s caeRem4.Crem_Contig0   238665 20 -  4500979 CGGACAATCATGCGGTACGC-----
i caeRem4.Crem_Contig0  C 0 I 5
s caeJap4.Scaffold17545   34538 25 +   227596 CAAAAGATCGCAGGGTGCAGAGCAA
i caeJap4.Scaffold17545 I 159 C 0
e caePb3.Scfld02_0      1384207 146 +  4147112 I
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=5383.000000
s ce10.chrX             3045670 35 + 17718866 TGACATCACACATTGTGATTTCGTGGCACACATTT
s caeRem4.Crem_Contig0   238690 22 -  4500979 TGACGTCATGTCTTGTGAGTTC-------------
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      1384353 31 +  4147112 TGACGGCATGTCTTgtgattttctgataaaa----
i caePb3.Scfld02_0      I 146 C 0
s caeJap4.Scaffold17545   34563 31 +   227596 TGACGTCacattttgtgattttttgataaat----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8091597 1288 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=-7253.000000
s ce10.chrX             3045705 462 + 17718866  
s cb4.chrX              8092885 426 + 21540570  
i cb4.chrX              I 1288 C 0
s caeRem4.Crem_Contig0   238712 612 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1384384 457 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   34594 478 +   227596  
i caeJap4.Scaffold17545 C 0 I 5733
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=-183.000000
s ce10.chrX             3046167 3 + 17718866 GCG
s cb4.chrX              8093311 3 + 21540570 GTG
i cb4.chrX              C 0 I 5306
s caeRem4.Crem_Contig0   239324 3 -  4500979 GCG
i caeRem4.Crem_Contig0  C 0 I 52
s caePb3.Scfld02_0      1384841 2 +  4147112 gc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e caeSp111.Scaffold629   341424 627 - 33334924 I

a score=0.000000
s ce10.chrX             3046170 24 + 17718866 ATGACACGGCTTCTCCCTTCACCA
e caePb3.Scfld02_0      1384843  0 +  4147112 C
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   341424 627 - 33334924 I
e caeRem4.Crem_Contig0   239327 52 -  4500979 I

a score=39080.000000
s ce10.chrX             3046194 237 + 17718866 AGCTCCAAACTCGGCAATTTAAATTTCTCAGTTTTTCCTCGAGAGGA--GATGAGGGTTCAAAAAACGATGCTATTCAATTCAATCAAGAGAAGTGGAAGTG---GAATGCTGCAATAAAAAGAAATTACAAT-------------GAATGAAAAATGCAAGAAAGAAGCAACAAAGA-----AAAACGAAAGATTAGTGTGTGTGCTACGCA--------------TTTTTCTTTGGTTTCGTAGCAA-------CTAATA---AAGTTGCATCCATGGATAT
s caeRem4.Crem_Contig0   239379 262 -  4500979 AGTCCCGAACTCGgcaatt--------tcatttccttttaaGGAGGA--GATGGGAGTTCAAAAAACGGC----TTCCATTCAATCAAGAAGAGTGGAAGTGGAAGAATACTGCACTACAAT-AGATGACGATTCTTTTCTTA---TTCCGGAtgcagaattagaaaaaaaggaaaaaagatgtGAAGTGAAAATAGGAATGTAT-TTTTGCTTATTCTcgtcgtt-ttgttttctggttTCATAGCAACATGGTCCTTGTA--GAATATGTATCCTTGGTTAT
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold629   342051 261 - 33334924 AGTCCCGAACTCGGCAATT--------CCATTTCCtcttagaaaaaaacgatggGAGTTCAAAAAACGGG-CGGTTTCATTCAATCAAGAAAAGTGGAAGTGGAAGAATACTGCACCACAAT-AGATGacgattccttttttctgtggTCGGATGctgaatggaaaaag-----agaa-----tgaagcgaatatgaaaatgaa---ttcgtcCGTTTTTGGGATGAGTGCTTGTCTGTTTCGTAGCAACAATTGACTAATGGAGGGGTCGCTTCCAtggttat
i caeSp111.Scaffold629  I 627 C 0
s caePb3.Scfld02_0      1384843 241 +  4147112 --------------ctttt--------ccatttcctcttAGAAAAA---GAtgggagttcaaaaaacggC-GGGTTTCATTCAATCAAGAAAAGTGGAAGTGGAAGAATACTGCATCACAAA-AGATGACGATTCCTTTTCTC---GGCTGAATGTTGAGAggaaaatgggagaagaa-----tgaa-tgaatatagGAGCGAA---TTCGCC--TTCTTGTGCCTGGTTCTTCCCGGTCTCGTAGCAACTTAAGCCTAATG--GGGGATGCATCCATGGATAT
i caePb3.Scfld02_0      C 0 I 1875
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=-4418.000000
s ce10.chrX             3046431 107 + 17718866 TTTTAGGTCTTTGTTAGGGGCCCACCACGTCATTTTTATTGAAAATTGATTCATCATAAGTTGCCATATAACTTTTATGTGATAAAAATTGACCGTGAATATGTATT--
s caeRem4.Crem_Contig0   239641  76 -  4500979 ----------TCGTCTAGTGGATTTCACGTCACTCATAGACAATACaaaaataacattaattttgag---------------taaaat------gaaaaaatgaaat--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   342312  77 - 33334924 ----------ttttcttg----tttc----tattttttaaacttacGGACATAacgtatttttcgaaat------------tcaaaatttga--gcGAAAATatattct
i caeSp111.Scaffold629  C 0 I 58
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=683.000000
s ce10.chrX             3046538 37 + 17718866 TCTAGTCGAA-AAAAGATAAATTGAAAAATGTGGAAAA
s caeRem4.Crem_Contig0   239717 38 -  4500979 tttgaatgaatatgaaatggattaagaaatgttttaaa
i caeRem4.Crem_Contig0  C 0 I 293
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   342389 58 - 33334924 I

a score=0.000000
s ce10.chrX             3046575 35 + 17718866 CAAATATATGTTTTGTATTCTAGAGAAAATTATTC
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   342389 58 - 33334924 I
e caeRem4.Crem_Contig0   239755 293 -  4500979 I

a score=-684.000000
s ce10.chrX             3046610 275 + 17718866 AAATTTTCGGGCAGATAAGATGTAGTTTTGACTGCAAAATCAAAAAAAAAAAGATTCAACTCAATCTGACTTAAAAATACGTATTTCTCAAAAAATTGT---------ATTCCTTTTATTTCTCACAAAAATTGCTCATAAACTTTGTATATCGGTTCAAAATTCCAAAAAA----AAAGGGTTAACTTAGACAAAATCCTAAGTTTTTGGCTTGTCCGTATTGTATCTTGTAAGATAACTTCCCGCCAATTTTTCAGTGTGTGCTGTCCGGAGTAAATCAAACAAGA
s caeSp111.Scaffold629   342447 231 - 33334924 AAATT--------GATAAAAGGTGATCTTCATT--------------------ATTAGAGTTGATTCAAATTAAGATCAAG----TTTGACGAAATTGTTGACACCCAgatgtttttattta-aacTAAAGTcgggagaaaaa--tgaacaccaattcaaaatt--aaaaagctGTAGAATTTTTGCTTtaccaaaaattaaagtcTTCAAACAGATTCTGTTGAATCAAACAAAAGTATT-------------------TATACCTGTAGAAATAAA-CAATCATGA
i caeSp111.Scaffold629  I 58 I 30
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeRem4.Crem_Contig0   239755 293 -  4500979 I

a score=0.000000
s ce10.chrX             3046885 30 + 17718866 AACAGAAAACAATGGCAATGGCAACACCTT
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   342678 30 - 33334924 I
e caeRem4.Crem_Contig0   239755 293 -  4500979 I

a score=921.000000
s ce10.chrX             3046915 16 + 17718866 CAAAACCCTGAGAAAA
s caeSp111.Scaffold629   342708 16 - 33334924 AAAAGCCTTGAGAGAA
i caeSp111.Scaffold629  I 30 C 0
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeRem4.Crem_Contig0   239755 293 -  4500979 I

a score=-8839.000000
s ce10.chrX             3046931 197 + 17718866 --GTGACGTGTATTTC-------TCACGGTTGCGGAAGATTTTCAAATCAATTTTAATAATGGTGATTGAGCAATCGTTTTTAAAAAATTAATTCATCATTCTATGTTTGAATGCATCATTGTACCACAACAACAATA-----------ACAACCTCGTGATATTGTTTAAAAAAAA----GCAAAGCGTGAGTCACCTTAACG--GATTGAGAAATTTAGAA
s caeRem4.Crem_Contig0   240048 160 -  4500979 --GTGTCGTACATATC------------GGCACAGGAG-CTTACAGATCTCgtg------------------agaaatttcaagattgaaaatg----------tgattgaaagta---------agaaacaagaaaaaccgCAACTTTACAGCTaagaataaag------aagaaaaagcggagaatagaaa----aatgacgt-gattgaaacaattggga
i caeRem4.Crem_Contig0  I 293 I 74
s caeSp111.Scaffold629   342724 153 - 33334924 ATCTctcagaaacatttttggaatca-gatCAAAGGA-------AAATGACGTGT----ATGACAA------ATACATCTTCGGAGAACAAAGT----------TTCTCGGAAGct---------caaaacaatgaaa-----------acagCTCAGTGGCATT------AAGAAA----GGAAAGTTTAAG----CAAGACgtaaattgaaac--------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=-367.000000
s ce10.chrX             3047128 76 + 17718866 ATTTCACATAATTGTTTGAATTTTGAATGAATTTTTTTATTAAAGTTAACTTATTCCGGTAAAATCAAGTTCAAAA
s caeSp111.Scaffold629   342877 58 - 33334924 tttttctatagtttcttt--tttgaaacggatCGGATTA-------CAACTCAATT--gtcgaa-------caaaa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeRem4.Crem_Contig0   240208 74 -  4500979 I

a score=-603.000000
s ce10.chrX             3047204 36 + 17718866 AGCGCACA------------ACGATGACGATTGCTGGAACGAAAATTG
s caeRem4.Crem_Contig0   240282 48 -  4500979 AGAACACAGCAGTATCAAGGACCAAAACTTTAGACGAAACGTAAATTG
i caeRem4.Crem_Contig0  I 74 C 0
s caeSp111.Scaffold629   342935 18 - 33334924 --aacaca----------------------------aaattcaaactc
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1385084 1875 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=1343.000000
s ce10.chrX             3047240 49 + 17718866 AAATTGAAACTTTTCATTAGTTTCTCTTT----CAAAACTCTCGAATTACAAA
s caeRem4.Crem_Contig0   240330 44 -  4500979 ------AAACTCTTTTCgatagtttcttttttctaaccAGCTCAGATTAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   342953 31 - 33334924 aaatttaagatttctctaattttct------------cAGCTC----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1386959 52 +  4147112 aaattgaaacttttctcaattgtctctttttt-gaaacatctcgGATTACAAC
i caePb3.Scfld02_0      I 1875 I 63
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=-4400.000000
s ce10.chrX             3047289 53 + 17718866 ATATCATGGCGGCGAGTGTA----------------GTAGAAGAAGAGCAACAAAATACAATGGTCTTG
s caeRem4.Crem_Contig0   240374 60 -  4500979 --ATCTGGATTGCGA-TGCAAGAAACAGAGGGACGTagcgaaaaataaaaataaaa---actcgtT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   342984 15 - 33334924 ------------------------------------ATTGAGAAATAGCAA------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1387011 63 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=40101.000000
s ce10.chrX             3047342 247 + 17718866 CGAACAAATCAAAC----------------TGAACGATCATTGACCGCCCTATAATCAATCAGTTTTAC----ATGTATTGATAAAAT-TTTCCTCCACATATACACACACTGGCAGCCAACTCTCGTTCTGCAAACACTAAAGAGTTCAGAAAAAGTGG-------GTGAACCACGTATTTCGG--TGAGACCGAAACTAATAATTGCGGTGTGTGTGAG-CGAAGTAAATGCaagaaaaaaaaagaaaaaaaaaagaaaTTATTCACCAGTTGCAC
s caeRem4.Crem_Contig0   240434 228 -  4500979 TTACCACATGAAGTTATAGAAGAATGCCGGTGAAAAATCATAGGCGATTCAATAATCAATCATTATTACATGTATGTATTGATAAAATGCTC----------------CACTACTAGCCAATACTCATTCTGCAAAT-------AGTtcagaaaaagc------aaaaagaacaACGTATTTCCTCCGACCAGAGAAAATGATAATTGC-----ACGTTGG-TAAAGCGAGT--------------GAAGCAAAAA-GGAATTATTCACGAGTTGCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   342999 196 - 33334924 ------------------------------TGCACGATCATTGACCGCATAATAATCAATCATTCTTCC----Atttattgataaaat-att----------------caCTACTAACCGGGCCTCACTCTGCaaat-------agttcaaaaagaatgg----gAAAGAAACTGCGTATTtcccagaaaaaaggaaaatgataattGC-----ACGTTGG-TGAAGTGAgt--------------gaagcaaaaaaagaataattcaCGAGTTGCAC
i caeSp111.Scaffold629  C 0 I 688
s caePb3.Scfld02_0      1387074 220 +  4147112 ----CAAACAAAACATGAGAAGACT-----TGAACGATCATTGACCGCATGCTAATCAATCATTATTTT----AATTGTTGATAAAAA-TTT----------------CTTACCAAGCCGGCACTCACTTTGCaaat-------agttcaaaaagaaaagaaaagaaggaaactacgtatttcct--caaaaagaaaaatgataattgc-----ACGTTGGTTGGAGTGAGT--------------GAAGCAAAAAGGGAATTATTCACGAGTTGCAC
i caePb3.Scfld02_0      I 63 C 0
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I

a score=1156.000000
s ce10.chrX             3047589 11 + 17718866 GCAA--GTTCGAA
s caeRem4.Crem_Contig0   240662 11 -  4500979 --AACCATTCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1387294 11 +  4147112 --AACCATTCAAA
i caePb3.Scfld02_0      C 0 I 69
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   343195 688 - 33334924 I

a score=-2515.000000
s ce10.chrX             3047600 336 + 17718866 T--AGGACTGCTCG-----AAAATATTCAAAATGCGCAGTGCAAAAAAGTTATGGAGTTTTTCTTCACAACATTTTGCATAAGAGGGCATTTTTTGTTCCTTACAATACTACGTCACAAATTATGTAGGCATGTTTGAAAAATTTCTGAATTCAGATTTTAATAATTTTAAAATCACATGTTTTTGATCACAAGTATTAATTTCTCAAAGTTCTCCGTCAatttttaggattcaaaaaaaaatccgtcaacgagcctgagaatttaaaaaaaattcacgtctcactttaaaaaaatgtatgaaaattttttttggtagatcaaaacccataaataccGTTCAA
s caeRem4.Crem_Contig0   240673 198 -  4500979 GAAAGGACAGCTCTTTCTCAAGATATTTGAAATGCG------GAAAAA-----GGAGTTTCC---------------------AGTgactttttt----------------------------------cctatttggaaaaacaaaagactcggaaatcaaaaaatttaaa-----------ttaaaaataaggAATA-----TGACAATTCTGTGACAACCTC---------------AAGCCGGAAACGTGCCAAAG--------ACAAGTTCA-----------GAGATAATGCA-----------GTCGGGAaataagaa------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1387305  69 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   343195 688 - 33334924 I

a score=-262.000000
s ce10.chrX             3047936 527 + 17718866  
s caeRem4.Crem_Contig0   240871 395 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1387374 553 +  4147112  
i caePb3.Scfld02_0      I 69 I 217
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   343195 688 - 33334924 I

a score=-4772.000000
s ce10.chrX             3048463 264 + 17718866 GAGAAATTAAAATTTGTTCATTTGTTGATTTATTTATGGATAATTACAAAAAAGAATGCACTTCATAACTTGTAATTATTAAATTCTCGTTTTCTTTTAACTATTGTAGGCCTAATAACGCTAATTAATTTTACGTTTTGACTAAACTATTACTTTAATTATAAATGAATGGAAATTTATTTTTGAGTTACGGCAACTACTTAAGTAATAGAAACAAAAATTGGAACTTTCTTTGCTAAGAAATGAATCAAGAAAACAAATTGC
s caeRem4.Crem_Contig0   241266  87 -  4500979 -----ATCCAAAGTTTTGCAAATAGTG--TCAGTTATGCCTGTTCTTCAAAAAGAA------------------------------------------------------CCT-------------------------------------------------------ATGCAATATTATT---------------------------TGGACACATA----------------------AAACGCATCAAA------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1387927 217 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I
e cb4.chrX              8093314 5306 + 21540570 I
e caeSp111.Scaffold629   343195 688 - 33334924 I

a score=3092.000000
s ce10.chrX             3048727 42 + 17718866 GGACACATTTTAAACACACAT---------TTTTGTTTCAACACGCTTTGA
s cb4.chrX              8098620 43 + 21540570 GGCCATATCATAAACGCACacatataaaaattttgtactaACA--------
i cb4.chrX              I 5306 C 0
s caeRem4.Crem_Contig0   241353 13 -  4500979 ------------------------------TTTTGTActaaca--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   343883 34 - 33334924 GGACACATTATAAACATTGAA---------TTTTGTACTAACA--------
i caeSp111.Scaffold629  I 688 C 0
e caePb3.Scfld02_0      1387927 217 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I

a score=34358.000000
s ce10.chrX             3048769 360 + 17718866 AATT----TCAAAAAACCCAG-----------CGAAAGTCA-TCGGTGAACAAATATGA-CCTGGGCCCGTCATACG-------AGATGAGCAAATGAA---ACAACAGAAGGGAAAAGTTGGTGGACATTGATGTCATAGAG-ATGTCATTGAGATAGCC---CCGGTGGTCTGAG-GCACAAAAAGTTTC----AAAAAGTGGCGCCAGCTGATCTGAGAAATAGATC----GACAAGTGT-----GGGAGTAAGATAGATGGAA--------------GGATGATTT----A-TTTTTTGTTAAT-------TTTAAT--TCTTTTCGT--CTTTTTTCATTCGAACATATTTCGTATTT--TCGCCTTTTGTGTGAAACAGAAATAACCAACACTAAACAAAAAAAATTA-TCAGTGCAATCATATTTTATTAT
s cb4.chrX              8098663 329 + 21540570 ---T----TTAAAAAGCTTGGAAACCTCTTTGCAAAAGTCG-CCAGTGAACAAATATGACCCCCAACCTGTCATACGTGGgaaagaaagaacaaggaaaagcacaa-atgagaaaaaagaagaaata-actGATGTCATTGAGAAAGTCATTGCGATAGCCCATCGGGTGGTCTGAG--GAGCAAAatgttgaagaaaaaagtggcgCCAGCTGATTTG---------TT----AAGAAGTGG-----GGGTGT---------------------------GATTTTTCGCAAGG-ATTGTCTTTAGTgct----caaaaa------gtggtaaatttgtagttttgaaggtattttctattt--ttaaaatttg----taacACAGTTGGTT----------------------ATAGTCAAA---------G----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   241366 331 -  4500979 ---t----ttaaaaaaccgAGA----------TGAAAGTCA-CCAGTGAACAAATATGA-CCCGGCCCCGTCAGACG-------GGACGagcaaatgaa---acaa-aaaagcaaaacgttGGAGGACACTGATGTCATAAAG-ATGTCATTGAGATAGCC---GTGGTGGTCTGAG--AAGCGGAAAGTAG----AAAAAGTGGCGCCAGCTGATCTG---------TG----GGAAGGTGG-----GGGTGTATCAGAGCAATCG----------G---GAATTTCCCTATGG-ATCATTATCAGT---------CAAT------TTggt--gttttaaaatttgaatgaactGTTCTCAT--TTGACATTTG-Gtataaaataatttgtt-----------tcagaacatgCATGAACAAAATTAGACTTG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   343917 357 - 33334924 --------TTAAAAAACGAAG-----------CGAAAGTCA-CCGGTGAACAAATATGA-CCCGGGCCCGTCATAC--------GGGGGAgcaaatgaa---acaa-aaaatgagaaatgtgaTGGACATTGATGTCATAGAG-ATGATATAAAGATAGCC---GGGGTGGtctgagaaaagagaaaagttg----gaaaaatggCGCCAGCTGATCTA---------TT----AGAAGGTGG-----GGGTGTATTGGAGAAAGAGTTTCTCAAATATTCTACTCACTTCCAAA-ATTTCCGCCGGCGTTTTCTTAAAAACGAATTCGtgaatataaaattattttaataaattaaCTATAGCATCCATTTTTG----ACGAGAAAG----------------ACAAAAGGTA-ATAAAGAAAACGTcactcctctt
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1388144 337 +  4147112 ----AACATCAAAAAACGAAG-----------TGAAAGTCAGCGGGTGAACAAATATGA-CCCGGGCCCGTCATAC--------GGAGGagcaaatgaa---acaa-a-------aaggttGGCGGACATTAATGTCATCGAG-ATGTCATAGAGATGGCC---GTGGTGGTCTGAG-AAAGAAATAGTAGG----GAAAAATGGCGCCAGCTGATCTA---------TTAAGAAAGAGATGGGAGGTGGGTGGAATGGAGAAACAG------AAATA---GGTTCGCTCGGGAACACTTTTTCTAGC-------TAAAAA------CATGTAGAGAAGAGTTCCGAAATAGAAT----------TCCAACTGTG----AATAGAAAATGGTT-----------TCATAAATTA-ATTATGGAGACATTTCTGACAAC
i caePb3.Scfld02_0      I 217 I 107
e caeJap4.Scaffold17545   35072 5733 +   227596 I

a score=-10156.000000
s ce10.chrX             3049129 105 + 17718866 TTTCTCGACATTATTCCCAACTTGTCGTCAATTTCTCTTT------------GTCCACTTCTTGAACAAGATATCAAAGATGAGAGAAAGACAATTTTTGTTGAAAAATTTCGATTA
s cb4.chrX              8098992  49 + 21540570 CTTCTGAATATTAATCac-----attgttgttttttttccca----------acTCGTTCCGCC-----------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   241697  95 -  4500979 TTTCTTCACATTTTGCTC-----GTTTTGCATTTCCTTCTTATTTACTTTATACTTATTCTTACAACAAAGgatcaaacattttgaaaaaataatt------------cctc-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   344279  60 - 33334924 ------------------------tttcttttctctttc-------------aattattCT-CCAATAAAACATCAAAcctttt------agaatt------------tttcgatg-
i caeSp111.Scaffold629  I 5 C 0
e caePb3.Scfld02_0      1388481 107 +  4147112 I
e caeJap4.Scaffold17545   35072 5733 +   227596 I

a score=7406.000000
s ce10.chrX             3049234 22 + 17718866 TAATCCCACGCAGCCCACCTAA
s cb4.chrX              8099041  7 + 21540570 ---------------CACCTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   241792 22 -  4500979 TGATGTCAGTCAGCCCACCTaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   344339 17 - 33334924 -----tCACTCAGCCCACctaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1388588 22 +  4147112 TGATGTCAGTCAGCCCACCTaa
i caePb3.Scfld02_0      I 107 C 0
e caeJap4.Scaffold17545   35072 5733 +   227596 I

a score=110471.000000
s ce10.chrX             3049256 275 + 17718866 AC--TTCTTCAAAAAT-------------------TCCCAAA--------GATTCCAAGTAGCCAGCTGCAC--AGAACAAGTAAAAAAGT---------TGAT-----------AGAGAAACGAGTCAGAGAAGCTAGACACCACGCA------AGAGAGTGTCCTG-GCTGTA-----------CGAGCAGCGGAGCAAACGAATTCAAAAT---TGAGAAGCTT--TGGGTGA-GTGAT--GAGGA-AGTGGTACTGTTGTGGAGACGCAGGGCGCGAGGCAGGAAAAGCTCAACTAGAGACG--CG--GCGGGCGGC-TGTATGACAGA--------GAAAACGCATGGCAAAATGACAGAG
s cb4.chrX              8099048 329 + 21540570 TC--TTATTcagaattccgatttttgcgTTATCTCTTTTAAACTGCTGAAGATCTCAAGTAGTCAACAGCAT--AGAACAAGTAAATGATGAAGagagaaagat--atcaaagttagAGAAACGAGCCGAAGAATCTA--------ACAAGAGTGAGAGAGTGTCCTA-GCTGTACTGCAGCAGCACAAGCGGCAGAGCAaacgaattcaaaattgagaagaagctTTGGTGGTGG-GGAGTGAGagagtgaaaattttcatgaaga--CGCAG------GAAGAGAGAAAGCTCAAC---GGACGTTTT--GCGGGCGGCTTGCCTGACGGA--------AAAATTGCATGGCacagtgagagag
i cb4.chrX              C 0 I 1131
s caeRem4.Crem_Contig0   241814 285 -  4500979 ac--ttcttcaaaattccgtttttt--------tttcccaaactTCAGAAGAGCTCAAGTAGCCAGCTGCAT--AGAACAAGTAAATGGTT---------AGAT--ATTAGAGTTAGAGAAACGAGACGCCCA----------------------AGAGAGTGTCCTT-GCTGTACTGCAG-----TGAGCAGCAGAGCAAGCgaattcaaaatt--gacggaGCTC--GATGTGG-TGACT---AGGGAACAGCTTTTAGCGAAGAGGcgcag------aaaaagaaagagctCAAC---GGACG--CC--GCAAGCTGC-TGCCTGACAGA--------GGAAACGCATGGCAAAATGACAGAG
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   344356 293 - 33334924 aaatttcttcaatattcca-ttttt----------tcacaaaCTTCAGATGAGCTCAAGTAGCCAGCTGCAT--AAAACAAGTAAATGGCT---------AGATAGataagaaatagagaaacgAGGCA---AAACCG--------ACA------AGAGAGTGTCCTT-GCTGTACAGCAG-----CAAGCGGCAGAGCAAACGAATTCAAAATG--GGAGAAGCTT--TAGGTTT-GGAGC--GAGAGTTGAAGCACTTGGAAAGAGACGCAG-----CAATGAAATAGTGCTCCGC---GGACG--AC--TCTGCGGGC-TGcctgagaga--------gaaaaagcatggcacattggaagag
i caeSp111.Scaffold629  C 0 I 324
s caePb3.Scfld02_0      1388610 284 +  4147112 ag--ttcttcaaaattccgtttttt----------tcccaaacttCAGAAGAGCTCAAGTAGCCAGCTGCAC--AGAACAAGTAAATGGTG---------AGAT--ATTAGAAATAGAGAAGCGAGGC----AAACCG--------ACA------AGAGAGTGTCCTT-GCTGTACTGCAG-----CAAGCAGCAGAGCAaacgaattcaaaat---tgagaagctT--TGGGTGA-GCAAC--AAGAG-TGAGGAATTGGTTAAGAGACCGAG-------ACTAAAAAGTGCTCGGT---GGACG--CC--GCGGGCGGC-AGCCTGACAGA--------G-AAAAGCATGGCAAAatgacagag
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17545   40805 271 +   227596 -------------------attttt----------tctcaagCTCGAAAAAAGCTCAAGTAGCCGGTCGCGTAGAGAACAAGAAAATCAGC---------AGAG---------------------------GTGTCCG--------AAA------AGAGAGTGTCCTTGGGTGTACTGCAG-----TGAGCAGTAGAGCAAGCGAATTCAAAATTG-AGAGAAGCTC--TGGGTGGCGGTAC--GAGGG-AGTTTGTGTGCGAGCGAAACGCAGATGGCGCGAGCGGGAGAGCTTAAC---GGACG--CCAGGCGGACGAAGGGACGGAGagaaagaaaacgaaaaagcaTGGCACACTGACAGAG
i caeJap4.Scaffold17545 I 5733 C 0

a score=9235.000000
s ce10.chrX             3049531 29 + 17718866 TTGCACGATTTTAGTG-GAGAAGATTATCG
s caeRem4.Crem_Contig0   242109 30 -  4500979 AAGcaagatttttgtgaaaaaggcTTATTG
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0      1388903 29 +  4147112 aagcacgATTTTTGTG-AAAGGGCTTATCG
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17545   41076 29 +   227596 GAGCACGATTTTCGTG-GAGGGGCTTATCG
i caeJap4.Scaffold17545 C 0 I 195
e cb4.chrX              8099377 1131 + 21540570 I
e caeSp111.Scaffold629   344649 324 - 33334924 I

a score=-5.000000
s ce10.chrX             3049560 3 + 17718866 TGC
s caeRem4.Crem_Contig0   242139 3 -  4500979 AGC
i caeRem4.Crem_Contig0  C 0 I 241
s caePb3.Scfld02_0      1388932 3 +  4147112 AGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   41105 195 +   227596 I
e cb4.chrX              8099377 1131 + 21540570 I
e caeSp111.Scaffold629   344649 324 - 33334924 I

a score=191.000000
s ce10.chrX             3049563 2 + 17718866 AG
s caePb3.Scfld02_0      1388935 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 I 176
e caeJap4.Scaffold17545   41105 195 +   227596 I
e cb4.chrX              8099377 1131 + 21540570 I
e caeSp111.Scaffold629   344649 324 - 33334924 I
e caeRem4.Crem_Contig0   242142 241 -  4500979 I

a score=0.000000
s ce10.chrX             3049565 714 + 17718866  
e caePb3.Scfld02_0      1388937 176 +  4147112 I
e caeJap4.Scaffold17545   41105 195 +   227596 I
e cb4.chrX              8099377 1131 + 21540570 I
e caeSp111.Scaffold629   344649 324 - 33334924 I
e caeRem4.Crem_Contig0   242142 241 -  4500979 I

a score=595.000000
s ce10.chrX             3050279 76 + 17718866 AATCATATGACAATGATTGAATTCCATTTTCCTATTTAAACAATATGGAATTGATTTTTTTAAACTGCGAACAACa
s caePb3.Scfld02_0      1389113 65 +  4147112 AATCA-ATGACCATAAttaaatcccga----------aaaaaacgtcaagttttatatttttgtttacaaatcgga
i caePb3.Scfld02_0      I 176 C 0
e caeJap4.Scaffold17545   41105 195 +   227596 I
e cb4.chrX              8099377 1131 + 21540570 I
e caeSp111.Scaffold629   344649 324 - 33334924 I
e caeRem4.Crem_Contig0   242142 241 -  4500979 I

a score=-289.000000
s ce10.chrX             3050355 42 + 17718866 aaaaaaataaaaaattatttaataaaaaCATATCGTTCCAAA
s cb4.chrX              8100508 40 + 21540570 AAAAAGTCATGAAAATAGCAAACAAAACctcatcgag--aaa
i cb4.chrX              I 1131 C 0
s caePb3.Scfld02_0      1389178 27 +  4147112 aaaaaagtattcatcttgaaaacaaaa---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   41105 195 +   227596 I
e caeSp111.Scaffold629   344649 324 - 33334924 I
e caeRem4.Crem_Contig0   242142 241 -  4500979 I

a score=4446.000000
s ce10.chrX             3050397 33 + 17718866 ---GAAAAATAACAAATTTCTCT-GAAAATGAGGCAG
s cb4.chrX              8100548 35 + 21540570 -aaaaaacaccaaataTTCCAAT-AAAAACAAGGTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   242383 37 -  4500979 Gaaaaaggataaaatggtttaatggaaaacaaagtaa
i caeRem4.Crem_Contig0  I 241 C 0
s caePb3.Scfld02_0      1389205 33 +  4147112 ---aagacacagcaaattgtaat-aaaaacaagatag
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold17545   41105 195 +   227596 I
e caeSp111.Scaffold629   344649 324 - 33334924 I

a score=-1042.000000
s ce10.chrX             3050430 8 + 17718866 ATTGATTT
s cb4.chrX              8100583 2 + 21540570 TT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   242420 2 -  4500979 tt------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1389238 37 +  4147112 I
e caeJap4.Scaffold17545   41105 195 +   227596 I
e caeSp111.Scaffold629   344649 324 - 33334924 I

a score=-4179.000000
s ce10.chrX             3050438 36 + 17718866 TTC----AAAAAA-AAAAAAAGAAGCAGG-----GTTTCCCAATAT
s cb4.chrX              8100585 34 + 21540570 --------AGGTA-GGTAAAAGATGCGAACATCTG---CTTGGTGT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   242422 39 -  4500979 -------aaagtataacaaaaaatgtgaacatttgtTTCTCCTTGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold17545   41300 23 +   227596 ttcaataaaaaaa-agttaaatat----------------------
i caeJap4.Scaffold17545 I 195 C 0
e caePb3.Scfld02_0      1389238 37 +  4147112 I
e caeSp111.Scaffold629   344649 324 - 33334924 I

a score=4684.000000
s ce10.chrX             3050474 11 + 17718866 --TCTTTCCCTTC
s cb4.chrX              8100620 11 + 21540570 --GCTTCCACTTC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   242462 11 -  4500979 --GTTTCCACCTC
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   344973 11 - 33334924 --TTTTCCGCCTC
i caeSp111.Scaffold629  I 324 C 0
s caeJap4.Scaffold17545   41323 13 +   227596 CCATTTCCCTCTC
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1389238 37 +  4147112 I

a score=64052.000000
s ce10.chrX             3050485 85 + 17718866 ACTCCACATCACTCTCCTCCGTTTCCTCCGAGTCATTCTTCTCAAACGGCGAAGTATTCGAGCGTCCGCGTCTGCAACAATA---------AAA
s cb4.chrX              8100631 85 + 21540570 ACTCGACATCGCTCTCTTCCGTCTCGGCCGAGTCTTCTCTTTGGAACGGAGAGGTGTTGGCGCGTCCTCGTGGTCTAcaata---------aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   242473 85 -  4500979 ACTCAACATCACTTTCCTCTGTTTCTTCGGATTCATTCCGTCGGAACGGAGAGGTGTTGGCGCGTCCTCTTGGTCTGCAATA---------AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   344984 85 - 33334924 ATTCGACATCACTTTCCTCCGTCTCTTCAGATTCATTTCTTCGGAACGGAGATGTATTGGCACGGCCTCGTGTTCTGTAATA---------ATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1389275 94 +  4147112 ACTCAACATCGCTTTCTTCTGTCTCCTCGGATTCTGTTCTTCGGAACGGAGAAGTATTGGCTCGTCCACGTggtctggaagaaaaatgtgtaTA
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17545   41336 88 +   227596 ACTCCACATCACTCTCTTCAGTTTCTTCAGACTCATTTCGGCGGAACGGTGATGTATTGGCGCGCCCTCGTGGCCtgtaaaa------agtaaa
i caeJap4.Scaffold17545 C 0 I 22

a score=1313.000000
s ce10.chrX             3050570 5 + 17718866 TTTTT
s cb4.chrX              8100716 5 + 21540570 cattt
i cb4.chrX              C 0 I 543
s caeRem4.Crem_Contig0   242558 5 -  4500979 CAATT
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   345069 5 - 33334924 TATGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1389369 5 +  4147112 CATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   41424 22 +   227596 I

a score=1146.000000
s ce10.chrX             3050575 2 + 17718866 TC
s caeRem4.Crem_Contig0   242568 2 -  4500979 TC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   345074 2 - 33334924 TC
i caeSp111.Scaffold629  C 0 I 99
s caePb3.Scfld02_0      1389374 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   41424 22 +   227596 I
e cb4.chrX              8100721 543 + 21540570 I

a score=1479.000000
s ce10.chrX             3050577 8 + 17718866 GATTGTTA
s caeRem4.Crem_Contig0   242570 8 -  4500979 GATCATCA
i caeRem4.Crem_Contig0  C 0 I 50
s caePb3.Scfld02_0      1389376 8 +  4147112 GATTATTA
i caePb3.Scfld02_0      C 0 I 359
e caeJap4.Scaffold17545   41424 22 +   227596 I
e cb4.chrX              8100721 543 + 21540570 I
e caeSp111.Scaffold629   345076 99 - 33334924 I

a score=0.000000
s ce10.chrX             3050585 634 + 17718866  
e caePb3.Scfld02_0      1389384 359 +  4147112 I
e caeJap4.Scaffold17545   41424  22 +   227596 I
e cb4.chrX              8100721 543 + 21540570 I
e caeSp111.Scaffold629   345076  99 - 33334924 I
e caeRem4.Crem_Contig0   242578  50 -  4500979 I

a score=182.000000
s ce10.chrX             3051219 2 + 17718866 AA
s caeRem4.Crem_Contig0   242628 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 50 C 0
e caePb3.Scfld02_0      1389384 359 +  4147112 I
e caeJap4.Scaffold17545   41424 22 +   227596 I
e cb4.chrX              8100721 543 + 21540570 I
e caeSp111.Scaffold629   345076 99 - 33334924 I

a score=346.000000
s ce10.chrX             3051221 15 + 17718866 ATTCTATAATATTTC
s caeRem4.Crem_Contig0   242630 15 -  4500979 GCTTCATTGTCTCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1389743 15 +  4147112 ACTTTGTAAGATCTA
i caePb3.Scfld02_0      I 359 C 0
e caeJap4.Scaffold17545   41424 22 +   227596 I
e cb4.chrX              8100721 543 + 21540570 I
e caeSp111.Scaffold629   345076 99 - 33334924 I

a score=-533.000000
s ce10.chrX             3051236 4 + 17718866 AAAA
s caeRem4.Crem_Contig0   242645 4 -  4500979 AATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1389758 1 +  4147112 A---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   41446 4 +   227596 AAAA
i caeJap4.Scaffold17545 I 22 C 0
e cb4.chrX              8100721 543 + 21540570 I
e caeSp111.Scaffold629   345076 99 - 33334924 I

a score=430071.000000
s ce10.chrX             3051240 639 + 17718866  
s cb4.chrX              8101264 626 + 21540570  
i cb4.chrX              I 543 I 12
s caeRem4.Crem_Contig0   242649 644 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold629   345175 630 - 33334924  
i caeSp111.Scaffold629  I 99 I 6
s caePb3.Scfld02_0      1389759 631 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17545   41450 625 +   227596  
i caeJap4.Scaffold17545 C 0 I 6

a score=-4433.000000
s ce10.chrX             3051879 24 + 17718866 TTTTTT--AATAGGAAAAAACCAA-AA
s cb4.chrX              8101902 23 + 21540570 ttttct--ttgttccaatttcgaaa--
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold629   345811 17 - 33334924 TTTTTT--ACCATTGAG-----AA---
i caeSp111.Scaffold629  I 6 I 2
s caePb3.Scfld02_0      1390396 24 +  4147112 ttttttagATCATTGAATTTCTAG---
i caePb3.Scfld02_0      I 6 I 2
s caeJap4.Scaffold17545   42081 22 +   227596 tttttt--aatgaatagtTAAAAA---
i caeJap4.Scaffold17545 I 6 C 0
e caeRem4.Crem_Contig0   243293 31 -  4500979 I

a score=94044.000000
s ce10.chrX             3051903 104 + 17718866 TAATTTATGAACCTGAATATTGTAAGGCATGACATCACCCAATCCAATTGTTGTCAAGCTGATGAATGTGAAATAAAACGCATCGAAGAAACCGATTCCTGAAA
s cb4.chrX              8101925 104 + 21540570 agaatGCCTCACTTGAATGTTATACGGCATGACGTCTCCAAGCCCAATGGTTGTCAAACTGATGAATGTAAAATAGAACGCGTCAAAGAATCCAATACCTAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   243324 104 -  4500979 tgaaatacttacCTGAATATTATAAGGCATAACATCTCCTAACCCAATAGTTGTCAAACTAATGAATGTGAAATAGAATGCATCAAAAAAGCCAATTCCTGGAA
i caeRem4.Crem_Contig0  I 31 I 30
s caeSp111.Scaffold629   345830 104 - 33334924 AATTGTGCTTACTTGAATGTTATACGGCATGACATCTCCTAAGCCAATGGTTGTCAAACTGATGAATGTGAAGTAGAACGCATCGAAAAATCCAATACCTAAAA
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1390422 104 +  4147112 ATGGATGCTCACTTGGATGTTATACGGCATGACATCTCCTAGTCCGATAGTTGTCAAACTGATGAAAGTGAAGTAGAATGCatcgaaaaatccaattcctaaaa
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545   42103 103 +   227596 -TAATAGTTAACCTGAATGTTATAAGGCATAACATCTCCTAAACCAATTGTGGTTAGACTGATAAATGTAAAATAAAACGCGTCAAAGAATCCGATTCCTGGAA
i caeJap4.Scaffold17545 C 0 I 36

a score=450.000000
s ce10.chrX             3052007 2 + 17718866 AT
s cb4.chrX              8102029 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   345934 2 - 33334924 AT
i caeSp111.Scaffold629  C 0 I 33
s caePb3.Scfld02_0      1390526 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   42206 36 +   227596 I
e caeRem4.Crem_Contig0   243428 30 -  4500979 I

a score=145.000000
s ce10.chrX             3052009 2 + 17718866 TG
s cb4.chrX              8102031 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1390528 2 +  4147112 tg
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold17545   42206 36 +   227596 I
e caeSp111.Scaffold629   345936 33 - 33334924 I
e caeRem4.Crem_Contig0   243428 30 -  4500979 I

a score=336.000000
s ce10.chrX             3052011 29 + 17718866 AGGCAATGGTTAGAT---AAAAATAGAGGGCC
s cb4.chrX              8102033 32 + 21540570 AGATTAggaattgagcaaaaaaattgaggatc
i cb4.chrX              C 0 I 5
e caePb3.Scfld02_0      1390530 36 +  4147112 I
e caeJap4.Scaffold17545   42206 36 +   227596 I
e caeSp111.Scaffold629   345936 33 - 33334924 I
e caeRem4.Crem_Contig0   243428 30 -  4500979 I

a score=0.000000
s ce10.chrX             3052040 760 + 17718866  
e caePb3.Scfld02_0      1390530  36 +  4147112 I
e caeJap4.Scaffold17545   42206  36 +   227596 I
e cb4.chrX              8102065   5 + 21540570 I
e caeSp111.Scaffold629   345936  33 - 33334924 I
e caeRem4.Crem_Contig0   243428  30 -  4500979 I

a score=217.000000
s ce10.chrX             3052800 20 + 17718866 AAGTAAATTTCATGTTGTTG
s caeRem4.Crem_Contig0   243458 12 -  4500979 AAATAAATCTCA--------
i caeRem4.Crem_Contig0  I 30 C 0
e caePb3.Scfld02_0      1390530 36 +  4147112 I
e caeJap4.Scaffold17545   42206 36 +   227596 I
e cb4.chrX              8102065  5 + 21540570 I
e caeSp111.Scaffold629   345936 33 - 33334924 I

a score=0.000000
s ce10.chrX             3052820 1 + 17718866 T
e caePb3.Scfld02_0      1390530 36 +  4147112 I
e caeJap4.Scaffold17545   42206 36 +   227596 I
e cb4.chrX              8102065 5 + 21540570 I
e caeSp111.Scaffold629   345936 33 - 33334924 I
e caeRem4.Crem_Contig0   243470 0 -  4500979 C

a score=602.000000
s ce10.chrX             3052821 3 + 17718866 ACG
s caeSp111.Scaffold629   345969 3 - 33334924 ACA
i caeSp111.Scaffold629  I 33 C 0
s caePb3.Scfld02_0      1390566 3 +  4147112 ACA
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17545   42206 36 +   227596 I
e cb4.chrX              8102065 5 + 21540570 I
e caeRem4.Crem_Contig0   243470 0 -  4500979 C

a score=-96.000000
s ce10.chrX             3052824 1 + 17718866 T
s caeSp111.Scaffold629   345972 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1390569 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   42242 1 +   227596 T
i caeJap4.Scaffold17545 I 36 C 0
e cb4.chrX              8102065 5 + 21540570 I
e caeRem4.Crem_Contig0   243470 0 -  4500979 C

a score=96880.000000
s ce10.chrX             3052825 180 + 17718866 ACCCGGTTTGTTGCCTTCATTATGGTCAAACATTTTTATAGTAAGTGTGCAAATCAAAATGTATGCCAGTACAAGAAACAGTGCAAGCCACATTGGAAGCAATATTTCGTTCTTCTTACGGTTAACAGGCTGCTTCCGAAGTTTCCTAAA------------AATC----------------------------------AGTAAACT------------TGAAAAAAAAC--TTAAAAA
s cb4.chrX              8102070 237 + 21540570 ACCAGGTTTATTTCCTTCgttatgatcaaaaattgtaattgtGAGAGTACATATCAGAATGTATGCTAAGACAAGGAACAGTGCCAGCCACATTGGTAACAAAATGTCGTGTTTCTTTTTAGTGAGAGGTTGTTTTCGGAGGTTTCTATaattcttaattttgaaaaccgcAAAAGCAAGGCCCCTAACTTTGGactttgagctattttttctcggttcctgtcaaagata--tgaaaa-
i cb4.chrX              I 5 I 146
s caeRem4.Crem_Contig0   243470 183 -  4500979 -CCAGGTTTATTTCCTTCGTTGTGGTCAAATATCTTAATTGTCAATGTACAAATCAAAATGTACCCCAATACAAGTAATAGAGCAAGCCACATGGGTAGCAATATATCATTCTTTTTCCTCTTGATTGGTTGTTTCCGCAATTGTCTGTA------------GAAA--------------------------------TGAATTATCT-----------ATATCAATGGTCCTCGGAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   345973 182 - 33334924 ACCCGGTTTGTTGCCCTCGTTATGATCAAACATTTTGATTGTCAGAGTACATATTAGAATGTATGCTAACACCAAGAATAGAGCAAGCCACATTGGAAGTAATatatctttcttcttcttattcaaaGGTTGTTTTCTGagttgtctgaa------------aata-------------------------------taaagtgAAAT------------AAACttagatt--tcaaaa-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1390570 182 +  4147112 ACCCGGTTTGTTCCCTTCATTGTgatcaaacattttgattgtCAAAGTACATATCAATATGTATGCTAATACGAGGAACAGAGCAAGCCACATTGGTAATAATATAtcgtgtttctttttctttattggTTGTTTTCGaagttgtctgaa------------aaag-------------------------------tTATGTTATTT------------TGAGAACGACG--TGAAGG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   42243 187 +   227596 ACCTGGCTTGTTTCCTTCGTTGTGATCGAACATTTTGATTGTTACTGTACAAATAAGAATATAGGCTAGAACCAAAAACAAGGCGAGCCACATTGGTAATAGAACTTCGCCCCTTTTCTTCTTTATTGGCTGCTTTCGAAGTtttctgaa----------ttaaaa---------------------------aaattagaaacattA------------GAATAATGGCT--CCAAA--
i caeJap4.Scaffold17545 C 0 C 0

a score=-2813.000000
s ce10.chrX             3053005 3 + 17718866 TTC-
s cb4.chrX              8102453 1 + 21540570 --C-
i cb4.chrX              I 146 I 3
s caeRem4.Crem_Contig0   243653 1 -  4500979 --T-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   346155 3 - 33334924 tgt-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1390752 3 +  4147112 TTC-
i caePb3.Scfld02_0      C 0 I 416
s caeJap4.Scaffold17545   42430 3 +   227596 -TCA
i caeJap4.Scaffold17545 C 0 C 0

a score=38.000000
s ce10.chrX             3053008 1 + 17718866 C
s caeSp111.Scaffold629   346158 1 - 33334924 t
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold17545   42433 1 +   227596 C
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1390755 416 +  4147112 I
e cb4.chrX              8102454 3 + 21540570 I
e caeRem4.Crem_Contig0   243654 3 -  4500979 I

a score=258819.000000
s ce10.chrX             3053009 310 + 17718866 ATTCACTTGTATTTCAGAAGAAGAAATATGTAGCCATTTGTCAATATCTTCTGAAACCATTCACCAATGTCACCAAGCACTACTAGCATAATGGGCAGGCCAATCGACGCATAAATCATGGATAATGTTCTTCCCCATACTGTTTGACAAGATATTG----------------------------------------------------------TACCATAACCAATTGTTGAGAATAAAGTCATTGAGTAGAAGGTTGCCGATGAAAAGTACCACATCAAATGCATATCTAAATTTTCAGCTTTGTGCCATACACTTCCATGAAATCTTCCTTCTGCCTCTAACATTGTTTTGTAATATCTCTAAA
s cb4.chrX              8102457 356 + 21540570 ACTAACTTGTATTTTAGAAGCAAAAACACGTATCCGCTAGTAAGAACCTTCTGGAACCATTCTCCGATGTCTCCAAGCACCACGAGCATTATCGGTAAACCGATTGATGCATAGATCATTGATAAGATTCTACCCCACGTAGTTTGACAGGAAATAGTACCTAAGA-------ACAAGAA----TTAGCAatgcaaaaag-tttgaaaatcgaattacCATAACCAATAGTAGAGAAAAGAGTCATCGAGTAGAAAGTGGCCGATGAAAAGTACCACATCAGATGCatgtccaaattttcagccttatGCCACACACTACCATGAAATCTACCTTCCGCTTCTAACATTGTTTTGTAATATCGCTGGA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   243657 354 -  4500979 ACTTACTTATATTTGAAAAGCAAGTACACATAGCCTCCAGttagtattttttgaaaccattcACCTATATCACCGAGTACAACAAGCATTATTGGTAGACCAAGTGATGCATAAATGATAGATAACAATCGTCCCCAAAATGTTTGGCAAGAAATGGTACCTGTAA-------CAGATAA----ATGATAAAAACAACTG-CTTCTAAAT--ACCAACCGTATCCAATTGTTGAGAATAATGTCATTGAATAGAACGTTGCAGAGGAGAAATACCACATCAAATGCATATCCAGATTTTCCGCTTTATGCCAAACACTTCCATGAAATCTTCCTTCTGCTTCCAACATTGTCTTATAATACCTCTGCA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   346160 356 - 33334924 gCTCACTTGTATTTTAATAACAGAAATATGTATCCATTTGTTAGAACTTTCTGAAACCATTCTCCTATATCCCCGAGCACCACCAACATTATCGGAAGACCGATGGATGCGTAGATCATAGACAGTGTTCTACCCCAAGCTGTTTGACAAGATATTGTtcctgaaa-------atcagaaatctttgatttgaaacgaaatattcgaaat-----caCCATATCCGATAGTGGAGAAAAGAGtcattgaataaaaagtggCAGAGGAAAAATACCACATGAGATGCATATccaaattttcagctttatGCCATACACTTCCATGGAATCTCCCTTCTGCTTCGAGCATTGTCTTGTAATACCTCTTTA
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1391171 353 +  4147112 actcacttataTTTGAACAGCAAAAATATGTATCCATTTgtcagaactttttgaaaccattcTCCGATATCTCCAAGCACAACCAGCATTATTGGCAATCCGATTGAAGCGTAAATAATTGAAAGTGTTCTTCCCCAAACAGTTTGACAAGAAATTGTACCTAAAA----CTTATCAGA-----TTGTCTgagtatgaaa-aataaaact-----aaccatatccaattgttgaaaacaatgTCATTGAATAGAAAGTGGCTGACGAGAAGTACCACATCAAATGCATATCCAAATTCTCAGCTTTATGCCAAACACTTCCATGAAACCTTCCTTCTGCTTCTAGCATTGTTTTATAGTacctctgaa
i caePb3.Scfld02_0      I 416 C 0
s caeJap4.Scaffold17545   42434 349 +   227596 --GTACTTGtatttaaaaagcaaaaacgtGTAACCTGTAGTCAAGACTTTCTGAAACCACTCTCCAATATCTCCAAGAACAACCAGCATAATCGGAAGTCCAATAGAGGCATAGATAATCGATAGTGTTCTTCCCCATGCTGTCTGGCAAGAAATGGTACCTAGAATGCACTTATAAAGA----ATGGTAACATGGG----TTTTA---------AACCGTATCCGATTGTAGAGAATAGTGTCATGGAATAAAACGTCGCTGATGAAAAATACCACATCAAATGCATATCCAGATTTTCGGCTTTGTGCCAAACACTACCATGAAACCTTCCTTCAGCTTCCAACATTGTTTTATAGTATCGCTGAA
i caeJap4.Scaffold17545 C 0 I 552

a score=-7196.000000
s ce10.chrX             3053319  8 + 17718866 A-----------------------------AACAACG-
s cb4.chrX              8102813 38 + 21540570 AAGATGTTTTAGAATATAGATTTccagaagacaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   244011  8 -  4500979 ------------------------------ACCGAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   346516  4 - 33334924 A-----------------------------ACg-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1391524  8 +  4147112 a-----------------------------atcaaaa-
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold17545   42783 552 +   227596 I

a score=546.000000
s ce10.chrX             3053327 1 + 17718866 T
s cb4.chrX              8102851 1 + 21540570 t
i cb4.chrX              C 0 I 170
s caeRem4.Crem_Contig0   244019 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   346520 1 - 33334924 t
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1391532 28 +  4147112 I
e caeJap4.Scaffold17545   42783 552 +   227596 I

a score=-12103.000000
s ce10.chrX             3053328  27 + 17718866 TCTT---------------GAATTAATATTAAC-----------TAGTTA------------------------------------------------------AAT----
s cb4.chrX              8103022 111 + 21540570 tcttttttagaaattaagataatCGAAGTCAAAGTGCAAcatggcattctattagaaaCAAAATGCAACATGGCCTTCTTTTAAAACGGTTAATTAAAACAGAAAATCTAT
i cb4.chrX              I 170 C 0
s caeRem4.Crem_Contig0   244028  17 -  4500979 tttt----------------------------------------catttt------------------------------------------------------gatctaa
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   346521  29 - 33334924 ---------------cagaaaatcaat-----------------tattttatttggCG----------------------------------------------AAT----
i caeSp111.Scaffold629  C 0 I 2
e caePb3.Scfld02_0      1391532  28 +  4147112 I
e caeJap4.Scaffold17545   42783 552 +   227596 I

a score=1000.000000
s ce10.chrX             3053355 1 + 17718866 C
s cb4.chrX              8103133 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   244045 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   346552 1 - 33334924 C
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1391560 1 +  4147112 c
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold17545   42783 552 +   227596 I

a score=98647.000000
s ce10.chrX             3053356 163 + 17718866 TTACTTTTATAAGTTTTGCCAACTTGTTAACCCGATCTGTCCCATTTGTACTTAGCGTAACGTTAATTATATCTGTAGTTTCTTCATCAATTATACCTTGCATTAAAACAATAGTTTCTTTTAAATCCTGAAATATATGATACAATTTTTTAA--------TGTATTTTCA
s cb4.chrX              8103134 126 + 21540570 TCACTTTTATAAGTTTAGCCAATTTGTTATTCCGATCAGTTCCATTTGTACTAAGTGTGAGATTTATGATATCTTGAGTTTCTTCATCAATAATTCCTTGCATCAAAACAATTGTCTCTTTCAAAT---------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   244046 161 -  4500979 tcacttttattaattttccGAGTTTATTATTCCGGTCTGTTCCATTTGTACTCAGTGTGACATTTATGATATCTGATGTTTCTTCCGTAATAATTCCTTGCATTAAAACAATAGTTTCTTTCAGTTCCTACA---------ATATGATTAGGATAgccaa-actatttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   346553 161 - 33334924 TAACTTTTATTAATTTGGCAAGTTTATTGTTCCGATCAGTTCCATTTGTACTCAATGTCACGTTTATGATATCTTGGGTCTCTTCATCAATGATTCCTTGCATTAATacaattgtttctttcaaatccTGTA-TATCTgg-taaaaatttaaa--------attattcaCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1391561 162 +  4147112 taACTTTTATTAACTTGGCAAGTTTATTATTCCGATCTGTTCCATTTGTACTTAAAGTGATGTTTATTATATCAGATGTCTCTTCATCAATTATTCCCTGCATTAAAACAATAGTTTCTTTCAGATCctgaa---------tgaaaatttaaacAGTTCAGAACTTTCACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   43335 148 +   227596 TtacttttatcaattttccaagCTTATTGACCCTATCTGTTCCATTTGTACTCAGTGTAACGTTAATGATGTCGGTGGTTTCTTCATCAATAATTCCCTGCATCAATACGATAGtttttttGAGATCCTGAAATTT-----TAATCATTTCAA------------------
i caeJap4.Scaffold17545 I 552 I 193

a score=115464.000000
s ce10.chrX             3053519 180 + 17718866 ----TGAATAAC----TAAAAACTAACCTCCAGTTCTCTTGGAGATTCCAACTTTTCGAACATAAAGCCGCCGAGAAAAACATATCCGACAAGTAAAGCAATCAATGTGACATGCCTTATGCCGAATTTATGATGATAATATGCAAGCCATGCGAAAAACCGTGTTATTTCTGAAAGCT--------AGGTATTTT
s cb4.chrX              8103260 159 + 21540570 --------------------------CCTCTAATTCTCTGGGTGACTCCAATTTCTCAAACATGAAACCGCCAAGAAATACATATCCAACAAGTAAAGCAACAAGAGTGATATGTCGGATTCCAAATTTGTGATGGTAATAAGCAAGCCACGCAAAGAACCGagtgatttctggaatt-----------caatttt
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   244207 167 -  4500979 ----aactttGT----TA------TACCTCTAACTCCCTCGGTGactccaaattttgaaacataattcCTCCAAGAAATACATATCCAATCAATAATGAAACCAAGGTAATATGTCGGATTCCAAATTTGTGGTGATAATATGCAAGCCAAGCAAAAAACCGAgtaatctctgaa---------------aatttt
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   346714 169 - 33334924 ----TACCAAAT----TA--------CCTCTAATTCCCTAGGCGATTCCAATCTCTCAAACATAAAACCGCCAAGAAACACATATCCAACAAGTAAAGAAACTAATGTGATATGTCTGATTCCAAATTTGTGATGATAGTAGGCAAGCCAGGCAAAAAATCGcgttatttctgaaaac-----------agaacGA
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_0      1391723 169 +  4147112 ----TGTTCGAT----TA--------CCTCCAACTCTCTGGGAGATTCCAACTTCTCAAACATGAATCCTCCAAGAAAAACATATCCAACAAGTAAAGCAACTAATGTGATATGTCTGATCCCGAATTTGTGATGATAATAGGCCAGCCAAGCGAAAAATCGGGTGATTTCTGGAAGT-----------GGAACtt
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17545   43676 187 +   227596 tgaaaacacaatagcata--------CCGATAATTCTCTTTGCGATTCCAACTTTTCGAACATGAAACCACCTAAAAATACATATCCAATGAGTAATGAGACCAATGTTATGTGACGGATTCCGAATTTGTGATGGTAGTACGCAACCCAGGCAAAAAGTCTAGTTATTTCTGAAATATGTACATAAGTGGATCG-
i caeJap4.Scaffold17545 I 193 C 0

a score=-4120.000000
s ce10.chrX             3053699 20 + 17718866 --------TTAAAATTATTATGTTTTAA
s caeRem4.Crem_Contig0   244387 15 -  4500979 --------tcaaaattgtagTCT-----
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629   346898  6 - 33334924 --------ATAAAA--------------
i caeSp111.Scaffold629  I 15 I 4
s caePb3.Scfld02_0      1391902  6 +  4147112 --------aaaaaa--------------
i caePb3.Scfld02_0      I 10 I 8
s caeJap4.Scaffold17545   43863 20 +   227596 TTAAAGAAAAGAAATTATTT--------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8103419 34 + 21540570 I

a score=149508.000000
s ce10.chrX             3053719 145 + 17718866 ACAA-ACTTTGTTTTCGTATCTGTTTTTTCCGTTCCTTGTATTTTTTCTCATCAAATTCGAAATGAAAACCGAACGGTGACATGTCTTCAACTTTGCTCATGTGTGTGTCGATTTTGAGAACTATGCAATTATTTCGCTCCTGAAA
s cb4.chrX              8103453 145 + 21540570 ACTG-ACTCTGTTTTCGTATCTGCTTTTTTCGTTCCTTGTACTTTTTGGCATCAAATTCAAAGTGAAAACCGAATGGTGACATATCTTCAACCTTGCTCATATGTGTGTCAATTTTTAAGACTATGCAATTGTTcctttcctgaaa
i cb4.chrX              I 34 I 50
s caeRem4.Crem_Contig0   244402 145 -  4500979 ACAA-ACTCTGTTTTCGTATCTGCTTTTTCCGTTCCTTATACTTCTTGGCatcgaattcaaaatgaaaaccaaaTGGGGACATGTCTTCCACTTTGCTCATATGAGTATCAATTTTGAGAACGATGCAGTTGTTTCTTTCCTGAGA
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold629   346908 145 - 33334924 ACGA-ACTCTGTTTTCGTATCTGTTTTTTCCGCTCCTTGTATTTTTTAgcatcaaattcaaaatgaaatccgAATGGTGACATGTCTTCAACCTTGCTCATATGAGTATCAATTTTAAGTACAATGCAGTTGTTCCGCTCCTGGAA
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1391916 145 +  4147112 acaa-actttgttttcgtatctgcttttttctctccttgtACTTTTTCGCATCGAACTCAAAGTGAAAACCAAATGGTGACATGTCTTCAACTTTCCCCATGTGAGTATCAATTTTAAGTACAATGCAATTGTTTCGTTCCTGAAA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17545   43883 145 +   227596 -CAATACTTTGTTTTCGTATTTGTCGTTTGCGTTCTTTATATTTCTTTGCATCAAATTCAAAGTGAAAGCCAAATGGGGACATATCCTCAACTTTGCTCATATGTGTATCAATTTTGAGAACAATGCAATTATTGCGTTCCTAAAC
i caeJap4.Scaffold17545 C 0 C 0

a score=-627.000000
s ce10.chrX             3053864 3 + 17718866 -TTT
s caeSp111.Scaffold629   347053 3 - 33334924 -TTT
i caeSp111.Scaffold629  C 0 I 22
s caePb3.Scfld02_0      1392061 2 +  4147112 -TT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   44028 3 +   227596 TTT-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8103598 50 + 21540570 I
e caeRem4.Crem_Contig0   244547 40 -  4500979 I

a score=97.000000
s ce10.chrX             3053867 6 + 17718866 GCTTTT
s caeJap4.Scaffold17545   44031 6 +   227596 AATTTC
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1392063 0 +  4147112 C
e cb4.chrX              8103598 50 + 21540570 I
e caeSp111.Scaffold629   347056 22 - 33334924 I
e caeRem4.Crem_Contig0   244547 40 -  4500979 I

a score=-3190.000000
s ce10.chrX             3053873 398 + 17718866 AATGCCTATTTTTCATTCCAGTGGACTAATCAATATCATGACGTAAAataaagttttacttaaagttttacatataagttttTAATGTGAATTTCTTAACACTGACAGGGTATACTTTGATAGTTTTTGGTTTCATCAAAATTTCGGCATGAAAAAATACATGTCAATTATTTCTCAA-TAATTCAACAAAATTTTGATAAAACCAAAAACAACCGATCTGCCGGAGGTTCAAGACTAATAAAAAGT-CATTTTGGTCATGGACTGTATAA------TTCTTAACAAAAAATACAAACAGAATTTACATTTGTATTTAAAAAAAAAACTGTAAAAAATCTGGAATACATCTACCTGACAGGTATCAAAGTATTGtataatttattttattattaaaccttttttag
s caePb3.Scfld02_0      1392063 248 +  4147112 -------------------------------------------------------------AGAAGTTTACG-----GTTTTCAAT-------TATCAA----GAAAGGGGAT-------CAGTTCTAAG------CAAAATTCC------------TAAAACTCAGTCAGCGGACGAGCAACCTCTCAGAATTTCGATAAac---------attgatatttttctgtttcagatgtGAGAAAAAGTACATTCAGGACA-GAATCGTACAAAACAATTtcttaatgaaaaatttcgaaa--------atttgcaCTGAAGAGAG---------------TGGAATT--TCTAACTAAC----------------TACAGTAAAGTTTGAGGTTGGAA-----TCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   44037   0 +   227596 C
e cb4.chrX              8103598  50 + 21540570 I
e caeSp111.Scaffold629   347056  22 - 33334924 I
e caeRem4.Crem_Contig0   244547  40 -  4500979 I

a score=5.000000
s ce10.chrX             3054271 2 + 17718866 aa
s caePb3.Scfld02_0      1392311 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   44037 2 +   227596 TA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8103598 50 + 21540570 I
e caeSp111.Scaffold629   347056 22 - 33334924 I
e caeRem4.Crem_Contig0   244547 40 -  4500979 I

a score=-878.000000
s ce10.chrX             3054273  6 + 17718866 -----ttaaaa-----
s caeRem4.Crem_Contig0   244587  6 -  4500979 -----TTAAGT-----
i caeRem4.Crem_Contig0  I 40 C 0
s caePb3.Scfld02_0      1392313  6 +  4147112 -----TGAAAT-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545   44039 16 +   227596 TTAACTTAAGGAATTG
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8103598 50 + 21540570 I
e caeSp111.Scaffold629   347056 22 - 33334924 I

a score=1162.000000
s ce10.chrX             3054279 5 + 17718866 aaaaa
s caeRem4.Crem_Contig0   244593 5 -  4500979 ATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   347078 4 - 33334924 -AGAA
i caeSp111.Scaffold629  I 22 I 1
s caePb3.Scfld02_0      1392321 4 +  4147112 -CGAA
i caePb3.Scfld02_0      I 2 I 1
s caeJap4.Scaffold17545   44055 5 +   227596 AACAA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8103598 50 + 21540570 I

a score=56002.000000
s ce10.chrX             3054284 119 + 17718866 aaCATACTGTTAGATGGTTTTTGATGATTCGACTCCTGGCCTGAATTTCGGACTCTTCTGAAATCAATTCTCATTTA----------CCATAGTCTT-------AGCTAGAAC-CACTTACTGATGGCAACATCCAT
s cb4.chrX              8103648 119 + 21540570 AACTTACAgtcaaatgatttttaattATCCTACTCCTCGTCTGGATTTCcgattcttctggaaaatt------gtgactacagtaaccaccaTACTT---------CTA---TAAACTCACTGATATCGACAtccat
i cb4.chrX              I 50 C 0
s caeRem4.Crem_Contig0   244598 120 -  4500979 AACTTACTGTCaagtgatttttcattatCCTGCTTCGAGCCTGGATCTCGGAttcttcttcaatatt-tttgggTGA-------AATTCATATACTT---------CTATTTTAAACTTACTGATGTCTACATCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   347083 116 - 33334924 CACTTACTGTTAGAtggtttttgattattcTGCTTCTAGCCTGAATTTCGGAttcctctgaaaacaa-actttCTGG----------CCGTTTCTTA---------TTACAGT-AACTCACTAATATCGACATCCAT
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1392326 117 +  4147112 AACTCACTgttaaatgatttttgatgattcggCTCCGAGCCTGGATCTCTgactcttctgaaaatta-cctCATGAG----------CCGTGAGCTT---------CCTCAGTAAACCTACTTATATCGACATCCAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545   44060 122 +   227596 AGCTTACTGTTAGCtgattttttacaattctgcTTCGAGCTTGAAGCTCGGATtcttctggaaaaaa----atatta----------cagTATGCTTGAAGGTAAAATACCGT-AACTCACTGATATCAATAtccat
i caeJap4.Scaffold17545 C 0 I 57

a score=-18646.000000
s ce10.chrX             3054403 66 + 17718866 GTTTCCTG---ATTTTCATCCAGATTTTTCCTCTCCGAAT-----TTA-----GGTGCAATTATTTCACCACT-GTAGAA
s cb4.chrX              8103767 48 + 21540570 ttttcctt---cttt-------------------aaAAGTGGGCCGCA----------AACTAATCAGTAGAAAATAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   244718 67 -  4500979 TTTCTCTA---GTTTCT------GTTTTCCCAAAGAGAGTGCACAGTAATAATAATAGAACTAATCAGGGAAACGC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   347199 63 - 33334924 ----GGTGTG-ATGCTT------GTGTTTCTTGAATGTACAACTATTA-----ATTGGAAGTGATCAGCAGTG-GCAGTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1392443 66 +  4147112 TTTCACTGAGTATGTTC------GTCTTGATGAAAGGgagtaatttca-----aaaaaaaat--ttggaaacg-gCAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   44182 57 +   227596 I

a score=130537.000000
s ce10.chrX             3054469 320 + 17718866 ACGGGAGGCAATCTTTTGTCTCCGAACCCGCGTTGAACGGAAAAGT--GACTGCTCTTGGAGAAGAATGATAGGCCGACCATCATATTGTTTTACTGCCTACATTTATGGCTCTTTTTC-----------GTCAG-TACTCTC---------ATCAAGGG-----CTCTTATCA---AGCACTTT--ACAAAATATACTTCTCTTCCTGATTTACTACC--GTTTA--TGGAATT---GTGCTTCAATATTGAGTGCATCA--GGAGCAGCCACGATTGATGATGCAACTACCCAACTGCCGCGTGATTTTAAAAAGTCGTAAAATGTTGCAATTT--ATGTTGCAAGTGATTGTGGATT-------------TTTA------
s cb4.chrX              8103815 321 + 21540570 ---GTCACCGGT------TTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGC---CTATTTCTCTGGG-CACTCCC---------ACCCGGAGGGGCTCTCTTATCATACGGAATTCC--GTAAAATCAACTTTCCTTCCTGATTTACTACC--GTTAATTGGGAAAGAGAAAACTGGAA-GTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGA---CGGTT-GCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAA------GGCAAACAACTG-------------------TTTT------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   244785 312 -  4500979 ---GTCGACAGTCTTTCGTCTCCGAACCTAACCTGAACGGAAAACC--GGCTGCC--TTAAGAAGAATGATAGGCCGGCCCACATATTGTTTTACTGCCATCATTTATGGCtttcactctctttttttctctcgg-tCCTCCC---------ACTTGGGG-----CTCTTATCA---GGTATTCC--ATCGAATATACTTTCCTTCCTGATTTACTACC--GTTAA--Gggaaattgaaa--ctgaa-attgagtgCA-----GGAGCTGCTGCGATTGGTGATGCAACT---CA----TCGCGTGCTTTAAAAAGATCGTAAAACGTCGATATGGTGTGGTGGCAAACAAGTG-------------------TTAC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   347262 331 - 33334924 ---GTCGACAGTCTTTCGTCTCCGAACCCGACTTGAACGCAGAAAT--GACTGCT--CGGAGAAGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTATggctctctcat-ttttctatctctcgA-TACTCTC---------GCTCTTAG-----CTGTTATCA---AGCACCTCTTTTCATATATACTTTTCTTCCTGATTTACTACC--GTTAA--GGGAAACTAAAAGCAATTA-ATTGAGTGCAGTT--GAAGGCGCCACGATTGATGATGCAACA---------TCGCGTGCTTTTAAAAGATCGTAAAACGTCGGAATGA----TTTGCAAACAACTTTTAGTTCATGATTAACAACTTTC------
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1392509 307 +  4147112 ---GTCGACAGTCTCTCGTCTCCGAACCCGACTTGAACGCAAAAGT--GGCTGCT--TGGAGAAGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTATGGCTCTCTCTT-TTTACCCTCTCTTGG-TACTCCC---------ACTGTGAG-----CTCTTATCA---ACCATTTC--TCCAAATACACTTTCCTTCCTGATTTACTACT--GTTGG--ACAAAATCGAAAGCGGTAA-ATGCCTTGAA-----GGAGCCGCCACGATTGATGATGCAACA---------TTGCGTGCTTTTAAAAGATCGTAAAACGTTGTAATGA----CTtgcaaacaactt-------------------tttc------
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold17545   44239 280 +   227596 atacaatataATCTTTTGTCTCCGAACCC-------------------GGC------TGAAGAAGAATGATATGTCGA-CATCACATTGTTTTACTGCCATCATTTACGGCTCTCTGTC----------TCTCAGCTACCCTCTGATAGAGAGAACAGAG-----CACTTATCA---AACAGTCC--GCAAAGTATGCTTTCACTTCTAATTTACTACTGGGTTTA--CTGTCAT--------TTAA-GGGTGATGCA-----AGAGTAGCAAAAGTATGTA----AACT---------GCGGGAGAATTTAAAACGTTGCACACTTTTTCATTAA---------ACAAAATTG-------------------TTGCTTTATG
i caeJap4.Scaffold17545 I 57 C 0

a score=-8223.000000
s ce10.chrX             3054789 27 + 17718866 CGAAAATTTGCGGCTAGAATGCATTTG--------------
s cb4.chrX              8104138 24 + 21540570 CAATGATATATAACTTT---ACTCCTG--------------
i cb4.chrX              I 2 I 3
s caeRem4.Crem_Contig0   245097 25 -  4500979 CTTTGATTAACAACTTT--CACTTCTA--------------
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold629   347600 20 - 33334924 TTCTAATACGAAA-------GCAACCG--------------
i caeSp111.Scaffold629  I 7 C 0
s caeJap4.Scaffold17545   44519 35 +   227596 ---TGATAAAGCACCCG---GAATTGGCTATAAATTATCAG
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1392816 40 +  4147112 I

a score=-400.000000
s ce10.chrX             3054816 4 + 17718866 -AAAA
s cb4.chrX              8104165 4 + 21540570 -AACA
i cb4.chrX              I 3 I 102
s caeRem4.Crem_Contig0   245157 4 -  4500979 -AAAA
i caeRem4.Crem_Contig0  I 35 C 0
s caePb3.Scfld02_0      1392856 4 +  4147112 -AACC
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17545   44554 4 +   227596 TAAA-
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   347620 0 - 33334924 C

a score=-8244.000000
s ce10.chrX             3054820 81 + 17718866 TGAATCTACAT--ATAAATTTGTTTCAATATTAAGCAAAC---AAAACTAAATTCTATTTTGAA----AAAGTA---------------AGGAATTCAAAAATTT
s caeRem4.Crem_Contig0   245161 84 -  4500979 TAAATCTTATT------ATC--TCTAGCTGATAAGAAAAC---ggaactgtttcttttttcacg----cATTCT------TAACTCAAATTGAACCCAAGTGTCA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   347620 90 - 33334924 -Gaatcaaattcaataaatc--atCTGGTGATAATGGAAC---ggaactaatttttttgtttcggtACGAAATA------TATTAT---TTGAACGTAACATTTT
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1392860 87 +  4147112 GGAATCAGCACCAATAAATC--ATTCGATGATAGTGAAGc---ggaactgttttttttttctca----aaagcg------aagttt---ttgaactgaattaTAC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545   44558 66 +   227596 ------------------------CGAATAAGAAAAGAATACGGAAGCTACATTTT------------GAAACAACGACTAACTAC---TGCCACATGGAAATTC
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8104169 102 + 21540570 I

a score=108684.000000
s ce10.chrX             3054901 220 + 17718866 GAACACGTGGTTATGGTAGT----------GTTTATGATTTTTTGCTCTCTACTCTTTTT-ATTGAAACTATACCATA-AAAGAGAAGCGTGCTATCATTTCAA--GTCGTTAACGGCCACTGTGCACCCGATAACCGTTAAGCTGACATTTTCATCGCATTA-----------------ACTTCACATTTC-TCGAAGTGTTTGATAAAA--ATGGTTTGATAGAGCAACTCTGGGTCTATATTTAGAATTTT
s cb4.chrX              8104271 217 + 21540570 GACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACA-CACTAAAAATGAAGTGTGTTATCA-----G--GTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTA-----------------GTTTCACAATTT-GCGACGTACACGGTGTG-----------ATAGAGCAACCATTGGTctaattatagaatttt
i cb4.chrX              I 102 I 1097
s caeRem4.Crem_Contig0   245247 223 -  4500979 TATCACGTGGTATTGCTATA----------TTGCATGATTTTTTGCTCTCTACTCTTTTT------AACGAC--CATT-AAAATGAAGTGGCTTATCA--------TTCATTTACGGCCACTGTGCACTCGATAACTTTTAAGCTGACATTTTCAACGCATTAACTTTCAAATTCTTGtcacttctcaattt-tcggcGTATACAATACT---ATGACTacataaaactatttttgggtttatttttgaacttt
i caeRem4.Crem_Contig0  I 2 I 68
s caeSp111.Scaffold629   347712 211 - 33334924 AGACACGTGGTATTGATATC---AAAATCTTCTTATGATTTTTTGCTCTCTACTCTTTTCAGTTGGAATTGC--CATA-AAAGTGAAAGATGTTATCA-----A--GTCGTTAACGGCCACTGTGCACCCGATAACTGTTAAGCTGACATTTTCATCGCATTA-----------------ACATCACATTTTGTCGTCGAA-------------TGGTTTGATAGAAAAGTCGTTTGTCTGAATTTAGAACATG
i caeSp111.Scaffold629  I 2 I 2
s caePb3.Scfld02_0      1392949 219 +  4147112 AACCACGTGGTGTTGATATC---AAAATcttctcatgattttttgctctctactcttttt-gttgaaattgc--tATA-AAAGTGAAGTGTGTTATCA-----A--GTCGTTAACGGCCACTGTGCACCCGATAACTGTTAAGCTGACATTTTCATCGCATTA-----------------ACTTCACATTTT-TCGCCGTATACACTGAT---GTGGTTCGATAGAGCAATTTTCGGTCTAAATTTAGCACTTC
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold17545   44624 223 +   227596 --AAATGTTGCCCCGAAAGT-TTTTACATTCGGTATGATTTTTCGCTCTC-ACTTTTCAC-ATGAAATAAGC--AATT-AAAGACGAATTTGTTATCA-----AACACTGTTAACGGCCACTGTGCACCCGACCAACGCTAAGCTGACATTTTCATCGCATTA-----------------ACTTGAAAACTC-ATACATTCTGGTCTGATATGGCAGTTTAAGAGAGCAGTTTTTGGTTTAAATTTAGAAATTT
i caeJap4.Scaffold17545 C 0 C 0

a score=-34.000000
s ce10.chrX             3055121 2 + 17718866 CA
s caeJap4.Scaffold17545   44847 2 +   227596 GA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1393168 2 +  4147112 I
e cb4.chrX              8104488 1097 + 21540570 I
e caeSp111.Scaffold629   347923 2 - 33334924 I
e caeRem4.Crem_Contig0   245470 68 -  4500979 I

a score=-4128.000000
s ce10.chrX             3055123 49 + 17718866 ACATCTTCGG-TAACTGGAACATTTTAAACTTTTATACCACTCGGTTCAC--
s caeSp111.Scaffold629   347925 45 - 33334924 AGTTTTCAGGAAAACTAA-----TCTGTACTCTGACGTAGTTCAGTTAGC--
i caeSp111.Scaffold629  I 2 I 19
s caePb3.Scfld02_0      1393170 38 +  4147112 ACATCTCCGG-TTACTA-----------ACAATTACGTCGTTCGGTTAAC--
i caePb3.Scfld02_0      I 2 I 39
s caeJap4.Scaffold17545   44849 45 +   227596 ---ACTGCAG--AACGGAACTTTGGCAAGCGTTGACGTC--TATGTTTCCAG
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8104488 1097 + 21540570 I
e caeRem4.Crem_Contig0   245470 68 -  4500979 I

a score=-704.000000
s ce10.chrX             3055172 19 + 17718866 CAAGTGAATCTACCTTGat
s caeSp111.Scaffold629   347989 19 - 33334924 CAAATGAATGACCCATGTG
i caeSp111.Scaffold629  I 19 C 0
s caeJap4.Scaffold17545   44894 10 +   227596 CAAGtttttc---------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1393208 39 +  4147112 I
e cb4.chrX              8104488 1097 + 21540570 I
e caeRem4.Crem_Contig0   245470 68 -  4500979 I

a score=-1107.000000
s ce10.chrX             3055191 1 + 17718866 -t
s caeRem4.Crem_Contig0   245538 1 -  4500979 -T
i caeRem4.Crem_Contig0  I 68 C 0
s caeSp111.Scaffold629   348008 1 - 33334924 -T
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold17545   44904 1 +   227596 a-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1393208 39 +  4147112 I
e cb4.chrX              8104488 1097 + 21540570 I

a score=-49998.000000
s ce10.chrX             3055192 218 + 17718866 tttattagttttatcaatgtaataaaaaatataa----------aaatca---------aaaataaaGGAAGTCAATCGAGAATGTCG--------------AC-----------------GATTTTAAAACTTAAATATCG--------------------------AAAGCCAAATACACATGCA--GACTACCAAGCTA--GTATATATTATGAGAATTTTTGTAATGACTGGTATTATATATGAACG-TTGTTTTCTTGTTGA------------CGAAGC--ATTAGAAACAATGC---GTGCTAAGATGA
s caeRem4.Crem_Contig0   245539 224 -  4500979 TTTATTAGGTCA----------TCATAAATAGAG-TTTCAGTCGAAAACGTTAGTAAAAAACATGAGTGAATTCTATGTTATCAGTCA--------------AC----------------------GGAAA---GAAAAGAG------------CA------------GAAGCCAAATACATGCAGG--AAATACTGGA-----GAAATTATTCTGAGAA--GGTGTCAATACTGG---------AAAATATTTGAGTTTTAAGATATTGTAATTCGATTGTAATTTGTTGTAATTGTAACTTCGGAATTAGACAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   348011 221 - 33334924 tttattattttca-----gaaattgcaCATTAAACTTACAGCGTAAGATG---------AACGGAAATGATGTATGTTACAATAGTCA--------------ACCGATGAAGAACTGATTTCAGttcgaat---gaaaatag------------aattg---------gAAGCAAAATATATGTACG--CAATAATAAATTACCAAAATAGTT--------------GAATACTGG------GGGGAAATG-TCGAGTTTGAGGA---------------GGat---ataaaaattgagaat--ggAAATCAAGAG
i caeSp111.Scaffold629  I 2 I 4
s caePb3.Scfld02_0      1393247 261 +  4147112 tttattgttttt----------ttggaaaatgaa--------aggagacg---------aacgaaaatgaattcagcgacaaaaaaaaagttgtgggTACTTATCTAAGGGGAGTAGG---CGGTTAGAAGTTAGGAAACGGGGGAAATCTACCAATTGACGCGATGAAAAGCAAAATACATGCAAGGTtagcagaaaatga--aaaggaattcTGA------GTGAGAAGATTGGT-tactggaaaaatg-atgagttcCGAAACA------------TGAATTTGGtgagaagtaaaaa---aaaaaacaataa
i caePb3.Scfld02_0      I 39 I 4
s caeJap4.Scaffold17545   44905 174 +   227596 tttattatttca----------tcatttcgtgga----------aaaatg------------gaaaatggaCT-AGTACAAATAATAA--------------GT-----------------TATACCAATAATAGGAAAACG--------------------------AACACAAAA-ACAGGTAAG--CGA-AACAAATGC--GAATTTCTTTT--------GTATGAGGTTCACTATCACAA-AAAATC-TTATTTTCAGAAAGA-------------CAATCTTATCATT-----------------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8104488 1097 + 21540570 I

a score=558842.000000
s ce10.chrX             3055410 736 + 17718866  
s cb4.chrX              8105585 787 + 21540570  
i cb4.chrX              I 1097 C 0
s caeRem4.Crem_Contig0   245767 741 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   348236 724 - 33334924  
i caeSp111.Scaffold629  I 4 I 38
s caePb3.Scfld02_0      1393512 730 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17545   45079 738 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-953.000000
s ce10.chrX             3056146 4 + 17718866 AAAA
s cb4.chrX              8106372 2 + 21540570 --AA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   246508 2 -  4500979 --GT
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0      1394242 4 +  4147112 CAAT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545   45817 3 +   227596 -AAA
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   348960 38 - 33334924 I

a score=256.000000
s ce10.chrX             3056150 9 + 17718866 TTAGTATAA
s cb4.chrX              8106375 9 + 21540570 TTAATATAA
i cb4.chrX              I 1 I 25
s caePb3.Scfld02_0      1394247 9 +  4147112 TGAGTAGAA
i caePb3.Scfld02_0      I 1 I 21
s caeJap4.Scaffold17545   45820 5 +   227596 TTTGt----
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   348960 38 - 33334924 I
e caeRem4.Crem_Contig0   246510 7 -  4500979 I

a score=-3314.000000
s ce10.chrX             3056159 391 + 17718866 CAATAAGTCAACCCTAGAATACAATTGTTATACTTTAATTAGaagccgccgacatttcacgagtttcgcgccccactgtgtttaacgtgacagcgacacgctctgaagaagatgtatggggcgtggtgctttgaaatgtcaaacacagttgggcgcgaaactcatgagatgtcggcggctaatattggt-tgaaagtcctgattttcgataaaatttttgcattttttccTACACTCCACGCAGTTTCTTTATTATAGCTAAAATGCACAAAAACATTTCATACATTTTTGGC----CGATGCAGCACATTTAGTGTGTTGCAATCAAAAATTATAAACACATCATCAC--------------------------AAATGATTATGTTGCTATTTTATCGCGTTTATCACGTCTTAACCACC
s caeJap4.Scaffold17545   45825 319 +   227596 --------------taga----aaatgttttgttaTGATGGTTTGTCACAGAC----CACAAGTTCAGTTCCCACCTCCATTCCTTG---------CAGGCTTTGAGCATCGT--------CGAGAATTAGTGAAGTTTC---------------CGGAACTagagaaattttaa-aaataatattaaTGTTAGGGTACAGA-AGTCGATAA------------------CGCACACTGCGTTGTT------TTGAAGGAAAAATAc------acatattatggattcgtgacgtagcgagacagcatGTCAAGT---TATGAgtcagcaattgttgggtc-tcgccacggttcagctcttggcggcgtgagaggaaaaaattatttcaatttttttt-------------tttttgcaaat
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1394256  21 +  4147112 I
e cb4.chrX              8106384  25 + 21540570 I
e caeSp111.Scaffold629   348960  38 - 33334924 I
e caeRem4.Crem_Contig0   246510   7 -  4500979 I

a score=-1874.000000
s ce10.chrX             3056550 37 + 17718866 TATT----CTTCAGTGAAACTTTAGGGAAACTGAGACATAG
s caeRem4.Crem_Contig0   246517 32 -  4500979 tatt----cttttttgaa----tagagTGAGTATGATATA-
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold17545   46144 24 +   227596 tatttcaattttgctggagcacaa-----------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1394256 21 +  4147112 I
e cb4.chrX              8106384 25 + 21540570 I
e caeSp111.Scaffold629   348960 38 - 33334924 I

a score=300.000000
s ce10.chrX             3056587 1 + 17718866 C
s cb4.chrX              8106409 1 + 21540570 C
i cb4.chrX              I 25 C 0
s caeJap4.Scaffold17545   46168 1 +   227596 c
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1394256 21 +  4147112 I
e caeSp111.Scaffold629   348960 38 - 33334924 I
e caeRem4.Crem_Contig0   246549 0 -  4500979 C

a score=1092.000000
s ce10.chrX             3056588 2 + 17718866 TT
s cb4.chrX              8106410 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1394277 2 +  4147112 TT
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17545   46169 2 +   227596 tt
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   348960 38 - 33334924 I
e caeRem4.Crem_Contig0   246549 0 -  4500979 C

a score=174748.000000
s ce10.chrX             3056590 450 + 17718866  
s cb4.chrX              8106412 379 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   246549 428 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold629   348998 384 - 33334924  
i caeSp111.Scaffold629  I 38 C 0
s caePb3.Scfld02_0      1394279 432 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   46171 676 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=726.000000
s ce10.chrX             3057040 2 + 17718866 AA
s caeSp111.Scaffold629   349382 2 - 33334924 AA
i caeSp111.Scaffold629  C 0 I 37
s caePb3.Scfld02_0      1394711 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   46847 2 +   227596 AA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8106791 0 + 21540570 C
e caeRem4.Crem_Contig0   246977 38 -  4500979 I

a score=-4356.000000
s ce10.chrX             3057042 36 + 17718866 GA-GCTTAATGAATT-----------AATAGGTTCAAGTTGAAATAAA
s caePb3.Scfld02_0      1394713 37 +  4147112 AATGTTTATTGAGTTTG-----GTAGGATGGCTTC---TTCGATT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   46849 39 +   227596 -----TTGGCGATATTGTCAGAGTAAAGAAAACTA---GTGAAAAAA-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8106791  0 + 21540570 C
e caeSp111.Scaffold629   349384 37 - 33334924 I
e caeRem4.Crem_Contig0   246977 38 -  4500979 I

a score=225605.000000
s ce10.chrX             3057078 400 + 17718866 ATACCTCTTCTTGCAGAAAGTTCATCCTGCTTCTGATCAAATTCACATCTGACTTGTGCAAGCTCACTCTTGATCATCGCCAGTTCGAGATGGTTTTCAGCAAGATTTTGTCGCAAGTCGTTATTTTCCTCATTTACAACCTACAACTCATTGCTGTATCAAGGGAATGGTGCAGCTCCACATTTCGAATCAAACTTTATTAACTC--ACTTTCAGTTTATCAGACAACTCTTTTTGATGGTTCAGCCGTTCATTTTCTCGTTCAAGAGCTTTTTCCATTTTCTGCAGTCTTTCTATGTTGTTTCTCATTTCTGACATTTCATCCGACATTCTTTGGCGCATTTCTTCTTTCTCTTTTGTCAGACGGTCTCGCTCCTG--AA-GT---ATTATTTTTGT--GGGGGGAAA
s cb4.chrX              8106791 378 + 21540570 ----CTCTTCTTGCTGACAACTCATCCTGTTTCTGATCAAAATCTGCTCTAACCTGAGCCAGCTCACTTTTGATCATGGCCAATTCCAAATGATTCTCGGCAAGATTCTGACGCAAATCATTGTTCTCTTCATTAActacctgaaaat-----tcaaactt---------------ctctTTTACTAAT--AAGACCGAATAACTC--ACTTTTAGTTTATCGGATAAATCTTTCTGATGATTGAGTCTCTCGTTCTCCCGCTCCAGCACCTTCTCCATTCTTTGCAGACGCTCAATGTTGGTTCTCATTTCCGACATTTCTTCAGACATTCTTTCGCgcatctcttctttttctttggttAGGCGCTCTCTTTCCTG--AACGTTAGTTGAGTTATAA--TCATGAACA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   247015 373 -  4500979 gtacCTCTTCTAGCCGAGAGCTCATCCTGCTTCTGGTCAAAATCAGCTCTGACTTGGGCGAGTTCACTCTTGATCATAGCCAATTCtaaatgattttcagcaagatTCTGTCGCAAGTCGTTGTTCTCCTCGTTGACTACCTAAAA-------CCATATCA---------------GTTATCGGCTAA---ACTATCCATTAGTCC--ACCTTAAGCTTATCGGATAGATCTTTTTGGTGATTGAGTCTCTCATTCTCGCGTTCCAAAACCTTTTCCATTCTGGTCAAACGTTCAATGTTGCTTCTCATTTCGGACATTTCCTCAGTCATTCTTTGACGCATATCCTCCTTTTCTTTAGTGAGACGATCTCTCTCCt------gtaaattcaattttag----gtGAACA
i caeRem4.Crem_Contig0  I 38 I 2
s caeSp111.Scaffold629   349421 376 - 33334924 ATACCTTTTCTATGAGACAACTCATCTTGCTTCTGATCGAAGTCAGCTCTCACTTGTGCCAATTCACTTTTGATCATTGCGAGTTCCAAATGATTCTCAGCAAGATTCTGACGGAGgtcattgttttcttcgttcACAACCTGAAA-------TCAGGTT-----------------TCATAAATTGATTATGAATGGAACAGTTAG-ACCTTGAGTTTGTCGCTAAGCTCTTTCTGATGGTTGAGTCTTTCGTTCTCACGTTCAAGAACCTTCTCCATCTTCTGCAAACGGTCAATgttgtttctcatttcagcCATTTCCTCAGTCATTTTACGACgcatctcttctttttcctttgtcAATCGCTCTCTttcctg--aa-acaa-aatagttttga-----ttcaaa
i caeSp111.Scaffold629  I 37 I 377
s caePb3.Scfld02_0      1394750 336 +  4147112 -CACCTCTTCTAGCAGAGAGCTCGTCTTGCTTCTGATCAAAATCAGCTCTAACTTGTGCAAGTTCACTCTTGATCATAGCGAGTTCCAGATGGTTCTCTGCGAGATTCTGACGCAAGTCATTGTTCTCCTCGTTGACA----------------------------------------------------------------------ACCTTGAGCTTGTCCGAGAGCTCTTTCTGATGGTTCAATCTCTGATTTTCACGCTCCAAGACCTTCTCCATCTTCTGAAGACGATCAATGTTAGTTCTCATCTCTGACATTTCTTCAGTCATTCTCTGGCGCATGTCCTCTTTCTCCTTTGTCAATCGCTctctttcctg--aa-aaaataaaagtgctGAAATATTTCACA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17545   46888 384 +   227596 TTACTTTGTCTTGCAAATAGTTCATTTTGCTTTTCATCGTATTCGGTTCGCACTTGAGCCAGCTCACTCTTGATCATGGCCAATTCTAGGTGATTATCAGCCAGATTCTGTCGCAAATGGTTGTTCTCTTCATTTACGACCTGAAT-------AAAAATCA---------------ATTGTTGGTTTGAACAAGCTGAATTAAACGGTACCTTGAGCTTATCGGACAAGTCTTTTTGATTATTGAGCCTATGATTTTCCCTCTCCAGAACCTTCTCCATTCTCTGAAGGCGTTCAATATTGCTTCTCATCTCGGTCATTTCGTCAGTCATTGTCTGACgcatttcttctttttctttcgttAATCGGTTTCTTTCctgtaaa-ataaaattaagTCAAA--CAAGATAA-
i caeJap4.Scaffold17545 C 0 C 0

a score=87589.000000
s ce10.chrX             3057478 113 + 17718866 -AGACTTGTAACGCCACCTCTTGCCGGGCTTTCATTTCTGTGAGCTCCAGTTGTTGGTCAACTTCGCTTTCCATCTCTTCCATTCTACGATTGTACATTTCACGTTCACTGGA--A
s cb4.chrX              8107171 109 + 21540570 -AAA----TGAGCTCACCTCTTGACGAGCTTTCATCTCGATAAGCTCAAGTTGCTGATCAACTTCTGATTCCATTTCCTCCATACGACGATTGTACATTTCGCGTTCACttaa--a
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   247390 113 -  4500979 -CAAATTGTAGTCATACTTCCTGACGAGCTTTCATTTCTGTGAGTTCGAGTTGCTGGTCCACCTCACTCTCCATTTCTTCCATACGACGATTGTACATCTCGCGTTCACTGAA--A
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   350174 107 - 33334924 -AAA--------CTCACCTCTTGTCTTGCTTTCATTTCAGTAAGCTCTAACTGCTGATCCACTTCAttctccatctcttccaTGCGACGGTTGTACATCTCCCGCTCGctgaaaga
i caeSp111.Scaffold629  I 377 C 0
s caePb3.Scfld02_0      1395094 103 +  4147112 -AAA----------TACCTCCTGACGAGCCTTCATCTCTGTCATTTCAAGTTGTTGATCAACTtcattctccatttcttccatACGACGATTGTACATCTCACGCTcgctgaa--a
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17545   47272 114 +   227596 AGAGTTTAAACTTTTACCTCTTGGCGGGCTTTCATCTCAGCCAATTCGAGCTGCTGGTCAGCTTCATTCTCCAACTCTTCCATACGACGATTGTACATCTCGCGCTCGctaaa--a
i caeJap4.Scaffold17545 C 0 I 3

a score=-3619.000000
s ce10.chrX             3057591 18 + 17718866 AATATAGTATTTTTACAA
s cb4.chrX              8107280 16 + 21540570 atcaa--catttttctag
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   247503 13 -  4500979 agcta-----ttttcaaa
i caeRem4.Crem_Contig0  C 0 I 113
s caeSp111.Scaffold629   350281 15 - 33334924 atgaa--tgatATTAAA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1395197 15 +  4147112 attat--tgttcTTCCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   47386  3 +   227596 I

a score=-565.000000
s ce10.chrX             3057609  5 + 17718866 -----TTTAG--
s cb4.chrX              8107298 12 + 21540570 ttgaaCTTATTG
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold629   350296  5 - 33334924 -----TTTAG--
i caeSp111.Scaffold629  C 0 I 73
s caePb3.Scfld02_0      1395212  5 +  4147112 -----ATTAG--
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17545   47386  3 +   227596 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=-2946.000000
s ce10.chrX             3057614 60 + 17718866 --TATTC------ACTGAGTAATATAATTGATTTGCATTTGCAGGCTTAGAAAAACACTGATCTTAAG
s cb4.chrX              8107310 55 + 21540570 TATCTTCGAGACAACAAATAATTGTCTCGGATTT--ATCTACAG-----------TACCGATCGAAAA
i cb4.chrX              C 0 I 237
s caePb3.Scfld02_0      1395218 28 +  4147112 --TTTTCT-----ACTGAAAAGTGT----GACCT-----TGCAG------------------------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17545   47386  3 +   227596 I
e caeSp111.Scaffold629   350301 73 - 33334924 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=173.000000
s ce10.chrX             3057674 15 + 17718866 CCTACTATGGACAAC
s caePb3.Scfld02_0      1395246  5 +  4147112 ----------ACAAC
i caePb3.Scfld02_0      C 0 I 332
e caeJap4.Scaffold17545   47386  3 +   227596 I
e cb4.chrX              8107365 237 + 21540570 I
e caeSp111.Scaffold629   350301 73 - 33334924 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=0.000000
s ce10.chrX             3057689 275 + 17718866 AGGGGTCCCATAAAGTTTTCTACACAAGCGCCCGTGTCAGCTATGTTTTTTTTTAATAAATGAAACTGAAGTATCACTAAATAAGACAAACTTATATTAGATTGTCATAACATTTTTGTACGGCTTCCATGTGAGCGCAGAGCGGCGTCGGCGTTTCACGCaagcggccgacacgttaggtgttccgcgccgcactatacatgcggatacgttgcggcgaggcgactcaccggccggggaaagcgcctaaccggcgCCCAGATGAACCCAACATT
e caePb3.Scfld02_0      1395251 332 +  4147112 I
e caeJap4.Scaffold17545   47386   3 +   227596 I
e cb4.chrX              8107365 237 + 21540570 I
e caeSp111.Scaffold629   350301  73 - 33334924 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=135.000000
s ce10.chrX             3057964  87 + 17718866 TTTTCAAAAATACATAGTGTTTTAACAGTGATGT-----------------------------AACGAATT--------TTTTGTGATTTTCATCTAAAATCAGAA--------------------TGGTTTTGAAAGTCAGAT
s cb4.chrX              8107602 144 + 21540570 tatttgaaaatacataattttaCCAAAGTGGTGTCGGTAATGTCCACTAGTAAGAAGTAAGTCAACAAATTtaggaatatttttgaattgatttctAAGCTCaaaaaaaGTAGATGTCCCAATGTGTCTTCTTGAAACTTTCac
i cb4.chrX              I 237 C 0
e caePb3.Scfld02_0      1395251 332 +  4147112 I
e caeJap4.Scaffold17545   47386   3 +   227596 I
e caeSp111.Scaffold629   350301  73 - 33334924 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=-2674.000000
s ce10.chrX             3058051 44 + 17718866 ATAATTTATTACTTGGTTTTTTGTTTCAATTGCAAAA---------------------------------------------CTGTGCT
s cb4.chrX              8107746 79 + 21540570 atgatt----------ttctttttttcaattccagaaGTCACATGTCCCCCGCTCCTCTACTCACTGTTTCCACTGGTTTCCCCACACA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17545   47389 46 +   227596 ataatttat-------cGCTTAATTGAAACAACTAAAAGCATACAC------------------------------------ATGTACA
i caeJap4.Scaffold17545 I 3 C 0
e caePb3.Scfld02_0      1395251 332 +  4147112 I
e caeSp111.Scaffold629   350301 73 - 33334924 I
e caeRem4.Crem_Contig0   247516 113 -  4500979 I

a score=1332.000000
s ce10.chrX             3058095 2 + 17718866 TA
s cb4.chrX              8107825 2 + 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   247629 2 -  4500979 TA
i caeRem4.Crem_Contig0  I 113 C 0
s caeSp111.Scaffold629   350374 2 - 33334924 TA
i caeSp111.Scaffold629  I 73 C 0
s caeJap4.Scaffold17545   47435 2 +   227596 TA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1395251 332 +  4147112 I

a score=138291.000000
s ce10.chrX             3058097 165 + 17718866 CCTTGCATAAATACGTTGAAGTCGCTCATTTTCATGCTTCTTCTCTGATAGTTCTTTGTGAAATGATCCAACAACTCTCTCAAACTTCCTTAACAATGCAGGAACACCAGATGACTGTAGTTGTTCGTACAGCACCAATACTTCTTCTTGGCTGAAA------------------TTATATTT--------
s cb4.chrX              8107827 175 + 21540570 CCTTGCATAGATTCGTTGGAGTCTCTCGTTCTCATGCTTCTTTTCTGACAACTCTTTATGAAATGACCCAACCactctttcgaattttctcaacaaCGCTGGAACTCCAGATGACTGAAGTTGTTCGTAGAGGACTAACACTTCCTCTTGGCTGGAAGAAAACAG--------Ttttagaaat--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   247631 169 -  4500979 CCTTGCATAAATACGTTGGAGTCTCTCGTTCTCATGCTTCTTTTCCGAAAGTTCCTTATGAAATGATCCCACCACCcgttcaaattttctcaataatgCTGGAACTCCTGATGACTGCAGTTGCTCGTACAAGACCAACACTTCTTCTTggctggaaaaaa--------------tgaaaaat--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   350376 176 - 33334924 CCTTGCATAAATTCTTTGCAGTCTTTCGTTctcatgttttttctccgaCAATTCTTTATGGAACGATCCGACGACACGTTCGAATTTTCTGAGAAGAGCTGGAACTCCGGACGATTGCAATTGTTCATACAACACCAAAACTTCTTCCTGActgcaaaaagaaag-------aaaatataaat--------
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0      1395583 164 +  4147112 CCTTGCATAAATGCGTTGCAGTCTTTCATTCTCATGCTTCTTCTCCGACAATTCTTTGTGGAACGATCCAACAACACGCTCGAACTTTCTCAATAGAGCTGGAACACCAGATGACTGCAGTTGTTCGTAGAGAACCAACACCTCTTCCTGGCTGCAAA-------------------ATAAAT--------
i caePb3.Scfld02_0      I 332 I 32
s caeJap4.Scaffold17545   47437 191 +   227596 CCTTGCGTAAATACGTTGAAGTCtttcattttcatgttttttctccGACAACTCTTTGCTAAAAGATCCCACAACACGTTCAAACTTGCGAAGAAGCGCAGGAACTCCAGATGACTGCAACTGCTCGTACAGTACTAAAACTTCCTCttgactgcaaaaaaaaaaccacgcaaaaaaagaaatgcaaaTTA
i caeJap4.Scaffold17545 C 0 C 0

a score=-7248.000000
s ce10.chrX             3058262 23 + 17718866 GTCTTTTTTCAAAATAGAAAA-TT
s cb4.chrX              8108002 16 + 21540570 at--------aaaaatgatgTATT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   247800 22 -  4500979 cttttc-tGGACACGTGACGT-TT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   350560 21 - 33334924 --GATCGTTGTCACGAGATGA-TC
i caeSp111.Scaffold629  I 8 I 1
s caeJap4.Scaffold17545   47628 20 +   227596 ---AGTGTTGTCCAATAAATT-TT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1395747 32 +  4147112 I

a score=205595.000000
s ce10.chrX             3058285 352 + 17718866 CTTACCATGGAACGCTAAAGTCAATGTTAATATTTGTATCGGACTCTGAATGATAGTGTTCTTCGTCAAATACTCGGATCGCTGGTCGAGAGGAAGTCGAGTCACTTTCACTGTCAAACATTTGTTCATCACGTAGAAACATTGGTGGGTCCTCT---ACAGCAACCGATGCTCGACGCTGCATACCATTCAGGCCTAA-------------------------AAT-------------------AAATTTTA--GAACTTGAAAC-----------AAAATTTC-TAAACCTTTACCATGACTTTCTCCGTGCTGTACAGTGTCTTGGAAACCCCGCAAAAATTCCAACTTCTCAATTTTTCCAGAACCATCTTGATCCAACTCCGTGAATATGAAACGCAAATCCTGAAA
s cb4.chrX              8108020 350 + 21540570 TTCACCATGGAACACTAAAATCTATGTTGATGTTGGTATCGGATTCCGAGTGATAATGCTCTTCGTCATATACACGGATTGCAGGACGAGACGA---AGAATCACTCTCACTCTCAAAAACCAATTCGTCTCTTCTGAATACAGGACCACCATCGTCAAAAGCCACAGATGCACGACGCTGCATTCCATTGAGTCCTAA-------------------------ATTGcta---------------tagttttgaaaaacctcCGAC-----------AAAAATTA---------TACCTCTACTCTCTCCGTGTTGAACTGTCTCTTGAAATCCTTGAAGGAACtccatcttttcaatttttccagatccatCTCTATCCAACTCGTTGAAAATGAAGCGGAggtcctgaaa
i cb4.chrX              I 2 I 34
s caeRem4.Crem_Contig0   247823 348 -  4500979 CTCACCATGGAACACTGAAGTCAATATTAATATTGCTATCCGATTCAGAATGATAGTGCTCCTCATCGAAAACACGGATCGCTGGTCGAGAGGAAGTAGAGTCACTCTCGCTGTCAAATACTAACTCATCACGACGAAACATTGGTGGATCATCG---ATGGCAACAGATGCACGGCGTTGCATTCCATTCAATCCTGA-------------------------ACTAC-----------------CGATTTTG----ATCCATGTA-----------AATAATTA-----CTATTACCTCTACTCTCCCCTTGTTGTACAGTGTCTTGGAATCCTTGAaggaattcttttttttcaattcgacctGATCCATCTTGATCCAACTCTTTAAAGATGAAACGAAGATCCTGGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   350582 345 - 33334924 CATACCATGGAACGCTGAAGTCAATGTTCATGTTAGTATCAGATTCCGAATGATAGTGTTCCTCATCAAAAACACGGATAGCTGGACGA---GA---AGAGTCACTCTCACTGTCGAAAACTTGCTCATCTCGACGGAAATAAGGAGGATCGTCG---ATTGCGACAGAAGCTCTACGCTGCATTCCATTGAATCCTGA-------------------------AAGGAGAGA-------------GAATTCTTAGAGAGTTTTTCA-----------GATGTGTC----------ACCTCTACTTTCTCCGTGTTGCACTGTTTCTTCGAATCCTTGACAGAACTCCAACTTCTCAATCTTACCGGATCCATCCTTATCCAACTCTCTGAATATGAAGCGGACATCCTGTAA
i caeSp111.Scaffold629  I 1 I 33
s caePb3.Scfld02_0      1395779 407 +  4147112 CTTACCATGGAACACTGAAATCGATATTAATATTGGTGTCCGATTCAGAATGATAGTGTTCTTCGTCATAGACGCGGATAGCTGGACGAGTTGA---TGAGTCACTCTCACTGTCGAACACTTGCTCATCACGGCGAAAATACGGCGAGTCGTCG---TAGGCCACAGAAGCTCGGCGTTGCATACCGTTCAGTCctgaagaatgagaaacaatacgacaagagaagaagagaggcACATGCCATCGATTTATGTGGGAACCATCCGCCTCACCCGCTAAAGTGACAAACACACCtacctctcttttctccttgCTGGACTGTATTTTGAAATCCTTGAATGAACTCCAACTTCTCGATTCTTCCGGATCCATCCTTGTCTaactctttgaaaatgaagtggagatcctgaaa
i caePb3.Scfld02_0      I 32 I 35
s caeJap4.Scaffold17545   47648 349 +   227596 CTCACCACGGCACACTAAAATCAATGTTGACATTGGAATCGGACTCGGAGTGATAGTGTTCCTCGTCGTATATACGAATGGTTGGACGGGAAGTTACAGATTCGGGCTCACTGTCAAAGATTTGCTCGTCCCGTCGAAAAGCTGGTATATCGTCG---CAAGCCACGGAAGCTCGACGCTGCATTCCATCTAGCCCTGG-------------------------AAGCAAAGG-------------GAAATGTT-------CATTTT-----------ATTGTTAT-----TGTTTACCTCGATGCTCTCCATGCTTCACTGTCTCCTGGAACCCCTGGCAAAACTCGGTTTTTTCAATTCGACCCGAGCCATCTGAATCCAGCTCTTTGAATATGAATTCTAGGTCCTGAAA
i caeJap4.Scaffold17545 C 0 C 0

a score=91.000000
s ce10.chrX             3058637 1 + 17718866 T
s caeJap4.Scaffold17545   47997 1 +   227596 T
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1396186 35 +  4147112 I
e cb4.chrX              8108370 34 + 21540570 I
e caeSp111.Scaffold629   350927 33 - 33334924 I
e caeRem4.Crem_Contig0   248171 0 -  4500979 C

a score=919.000000
s ce10.chrX             3058638 6 + 17718866 TCAACA
s caeRem4.Crem_Contig0   248171 4 -  4500979 --AATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17545   47998 6 +   227596 TCAATA
i caeJap4.Scaffold17545 C 0 I 14
e caePb3.Scfld02_0      1396186 35 +  4147112 I
e cb4.chrX              8108370 34 + 21540570 I
e caeSp111.Scaffold629   350927 33 - 33334924 I

a score=337.000000
s ce10.chrX             3058644 12 + 17718866 GTTTTTTTTTCA
s caeRem4.Crem_Contig0   248175 12 -  4500979 Gatttattatta
i caeRem4.Crem_Contig0  C 0 I 40
e caePb3.Scfld02_0      1396186 35 +  4147112 I
e caeJap4.Scaffold17545   48004 14 +   227596 I
e cb4.chrX              8108370 34 + 21540570 I
e caeSp111.Scaffold629   350927 33 - 33334924 I

a score=0.000000
s ce10.chrX             3058656 592 + 17718866  
e caePb3.Scfld02_0      1396186  35 +  4147112 I
e caeJap4.Scaffold17545   48004  14 +   227596 I
e cb4.chrX              8108370  34 + 21540570 I
e caeSp111.Scaffold629   350927  33 - 33334924 I
e caeRem4.Crem_Contig0   248187  40 -  4500979 I

a score=160.000000
s ce10.chrX             3059248 3 + 17718866 AGC
s caeJap4.Scaffold17545   48018 3 +   227596 Agt
i caeJap4.Scaffold17545 I 14 C 0
e caePb3.Scfld02_0      1396186 35 +  4147112 I
e cb4.chrX              8108370 34 + 21540570 I
e caeSp111.Scaffold629   350927 33 - 33334924 I
e caeRem4.Crem_Contig0   248187 40 -  4500979 I

a score=-209.000000
s ce10.chrX             3059251 9 + 17718866 -AAAAATCGC
s caeRem4.Crem_Contig0   248227 9 -  4500979 -aaaaaaagc
i caeRem4.Crem_Contig0  I 40 C 0
s caePb3.Scfld02_0      1396221 7 +  4147112 ---aaaaaac
i caePb3.Scfld02_0      I 35 I 2
s caeJap4.Scaffold17545   48021 9 +   227596 caaaaagaa-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8108370 34 + 21540570 I
e caeSp111.Scaffold629   350927 33 - 33334924 I

a score=910.000000
s ce10.chrX             3059260 1 + 17718866 A
s caeRem4.Crem_Contig0   248236 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   350960 1 - 33334924 a
i caeSp111.Scaffold629  I 33 C 0
s caePb3.Scfld02_0      1396230 1 +  4147112 a
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545   48030 1 +   227596 a
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8108370 34 + 21540570 I

a score=122918.000000
s ce10.chrX             3059261 204 + 17718866 ACTTACATTATCATCAAGCTGTGGGCACACTTTCCTCAAATCCTCCATCGTCAGGTATCCCTTGGATTCGGAGTCGCAGAGAGAAAAGAGATTCTCCACCTCGGGTTTCGACATGGTTCGTCGTCTC----------------------------------------TGCAAAAC------------T------GCGGGTGC--GAATGATA--------TGCGAGGGCGGAAAAC--GG--------GCAAAAACG----GCCACGGTGGAACTATAAAA-A------------AACA----
s cb4.chrX              8108404 280 + 21540570 ACTTACATTATCATCAAGCTGTGGGCAAACtttcttcagatcctccaTCGTCAGAAACCCTTTGGATTCAGAATCACAAAGGGAGAACAGATTCTCCACATCGGGATTCGCCATGATTCGCGGTCTTTCTCTCTGTATTCTATGTGCCACTATTCTCTCTGCAAGAATGTGAAAT------------AGATAGAGCGGGTGCGAGAATGATAGATTCGTGGGGGAGGGGGACAaac--ggaaaaggaaaaaaaaacg----gccaCGGTGGAACTATAAAA-ACACAGAGAGAACGCGA----
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   248237 206 -  4500979 acTTACAGTGTCATCAAGTTGCGGAcagacttttttcagatcttccaTTGTTAAGAACCCCTTGGATTCAGAGTCGcagagagaaaacaaattttccacGTCGGGGTTCGCCATGATTCGTGGTCTC----------------------------------------TGCAATAC------------AACGAGAGCGGGTGC--GAATGATA--------TGCGAGGgcgaaaaac--gg--------agaaaaacg----GCCACGGTGGAACTATAAAA-A--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   350961 212 - 33334924 gctCACATTATCATCAAGTTGCGGACAAACTTTTTTAAGATCCTCCATCGTTAGATATCCTTTGGACTCGGAGTCGCAGAGGGAGAACAAGTTCTCCACATCGGGGTTCGTCATGGCTCGACTTTGC---------------------------------------AGTTGTTAAA----------GTGCGAGAGCGCGGAC--GAATGATA--------TGCGAGGGCAGGAAACACGG--------GGGAAAACG----GCCACGGTGGAACTATAAAACA--------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1396231 204 +  4147112 acttacatcATCGTCAAGCTGTGGGCAGACGGTTCTAAGATCATCCATCACCAAATATCCCTTGGACTCGGTATCGCATCGAGCGAACAAATTCTCCACGTCAGGATTCGCCATGACTGGCCGTCAC----------------------------------------GTCGATAC------------TGCGAGAGCGATTGC--GAATGATA--------TGCGAGAGCGAGAAAT------------GGGAGACCG----GCCACGGTGGAACTATAAAA-A--------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   48031 232 +   227596 acaaacctTATCATCAAGCTGTGGACACACTTTCCTCAGATCCTCCATAGTGAGATATCCTTTGGATTCAGAGTCGCAGAGAGCGAAGAGATTCTCCACCTCGGGGTTCCACATCTCTATAAACTGT---------------------------------------TTGCGAAAAGCGAATaatatgtgtgtgtgtgtgtgc--gagAGTGg--------cgcaaaaacagaaaac--agaaACA---GAAACAGCGCCAAGCCAcggtggaatcataaaa-a----------------atca
i caeJap4.Scaffold17545 C 0 I 1136

a score=-19848.000000
s ce10.chrX             3059465 170 + 17718866 CACACACACATAGCTA-----TGCATTATATCGATT----GACAATTTA-----------TCGGAAGCTAGCTGCCTTTAACAACAGTCATGGGAGTGAACGAGGGGG---------AG------------CT-GTTTT-------TAAA-------------------CAAAAATCGGGAACAAAAATTATCACAAACAAAAAAATATTTTTCGAAATTTCAAACCA------------CAAAAAATAT--------
s cb4.chrX              8108684 185 + 21540570 TGTATATAGATATTTA-----TATATTGTATCGATC----AATGATTTTTTCGAGTGagagggaaaa----------------------aaaagagaaagacagaaaaatgatgaagag--GGGAAGCTTCCT-TTTTTGAGGCGCTCAT-------------------GGGAGCG--------AGAAGCG---TGGGCGAGAA---------TCGCAAATTCGATTATTTTTATTGGCTGGGAACGTCAGACAATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   248443 178 -  4500979 ---------ACAACAG-----TGTATTGTATCGATC----GATGATTTT-----------GGGAAAGCT-----ACCCGTATGACTATCATGGGAGCGCGGACGGGGGCGAGCGAAGAA--GCAATGGTTTGT-GTTTT---------at-------------------gaaagag--aaataaaaaatcgctctgggaaaaaa---------ccaaaaaagaaaata----gattgttcaaaaaggaaaTATATTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351173 154 - 33334924 ---------ACAAGAGTGA--TGTATTGTATCGATT----gctaaaaac-----------ggaaaagctA----CCCCCTCCGACTGTCATGGGGGCGAAAGCGGGGGCgagaggaaag-agagaagcaAATTCGATTC---------AT-------------------CGGATGGggggagaaaaaacaatgatgggaaata-------------------------------------gaaaaaagat--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1396435 199 +  4147112 ---------ACAACAGTGAGGTATATTGTATCGATTCCCGACCAAAATC-----------GGAAAAGCT-----TCCCTTTGGACTGTCATGGGAGCGAGGCGAGAGATGTGGGGGCAGAAGAGAGGCACACT-GTTTT---------ATTGGcgggaaaatagaaaaagaaaagggcgaaaaggaagccactatgggaaacaa---------ccaaaaaCCGAttca-------tgtttgaaaaaagga--------
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=-8540.000000
s ce10.chrX             3059635 27 + 17718866 -------------GAA---------------TGTGTCGAACCGCACCGTACTATG------------
s cb4.chrX              8108869 33 + 21540570 --------GAAAGGAA---------------TATTTCGAAC-----------ATGATTCCGGGGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   248621 30 -  4500979 --------ATCTGCAG---------------cctttcattc-----------aaaattctcg---TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351327 44 - 33334924 cgaTGCATAAAAGGAAATAGATTCTGCCTGCCACCTCATAC-----------ACA------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1396634 41 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=1192.000000
s ce10.chrX             3059662 43 + 17718866 TGATCGGATCAGATTTAGAGAAAAAGAATGAAGAAGAAATTAA------------------
s cb4.chrX              8108902 31 + 21540570 CGATAGAAGGAGacttaa------------aaaaagaaactag------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   248651 41 -  4500979 TGATCCGatcagattttg------------aaagagaaacatACGAAAcgatt--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351371 38 - 33334924 TGATCCGCTCAGATTTTC-------------AAAGGAAACAAA----------CTATTTCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1396675 33 +  4147112 TGATCCGATCAGATTTTG-------------Gagagaaacaga----------c-----aa
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=-1480.000000
s ce10.chrX             3059705 14 + 17718866 AATCGCCCCAAAAA
s caeSp111.Scaffold629   351409  7 - 33334924 TAACGTT-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1396708  8 +  4147112 aaaGGTTT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8108933 12 + 21540570 I
e caeRem4.Crem_Contig0   248692  0 -  4500979 C

a score=17377.000000
s ce10.chrX             3059719 153 + 17718866 AAATCGTTCTGTTTATTGTA------------TTGTACGTGTACACAAACGGTGGAAAATAGAG--AGAAATGG--GAAAAGCGT------GGCAATT--TTCC--TTTTATGGTTGTGAAACTTTCTATT----C------GTCACAAAGAGTTCT-------CAAATAAA-GGGCGATGAGCGGAAGAGCATTGC
s cb4.chrX              8108945 153 + 21540570 -----gatttgtt--TTGTTTACCCAGTACTTCTC----TGTAAACGAACGGT-----------------------GAAAAGCGTATCAAAAGTGAGAAAGTTTGATTTTATGGCTGCGAACTT--CAAGG----CTGC---TTCATACAGttcttttctagaaaaaacaaat-aaaaatgagcaaaagaGTAGCGC
i cb4.chrX              I 12 I 736
s caeRem4.Crem_Contig0   248692 150 -  4500979 -cgtttttttgtttattgtgtACACAATACACTTTCACGTGTACACGAACAGTG----------------------GAGAAGCGT------GGTGAGA----TT--TTTTATGGttaagaaatttctgaat----ctcT---CTCGCATAAAATTTTCCC-----AAATAAATGGAGAATGAGCGAAATAGCATTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351416 171 - 33334924 -------TTTGTTTATTGTGTACACAGTTC--TTTCAGGTGTCAACGAACGGTtggaaataaagaaaaagatgggaGAAAAGCGT------ggaaaat--gctt--ttttatggttgtgaaattttcgatttctcccCTCAGCTCATACGAAGTTCCTCT----CGTATAAATAGAGAATGGGCAAAAGAGCA---G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1396716 163 +  4147112 ---TTGCTTTGTTTATTCTGTACACAATAC--TTTAACGTGTACATGAACggtggaaaatgaag-aaaagatgg--aaaaagcGT------GGAGGGt---ttt--ttttATGGATGTGAAATTT----------CTATTGGCCAGCATTGGGTTCCTCT----CATATAAA-AGCGAATGAGCGAAAGAGCATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=11683.000000
s ce10.chrX             3059872 39 + 17718866 TTTTGAATCTGGC--AAAAAAAAAATA-AACGAAAATAAAAT
s caeRem4.Crem_Contig0   248842 42 -  4500979 TGTAGAATTccataaaaaaggaaaacataataaaaatagaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351587 41 - 33334924 CATTGAATCccat-aaaaaggaaaacataataaaaataacat
i caeSp111.Scaffold629  C 0 I 50
s caePb3.Scfld02_0      1396879 41 +  4147112 TGTTGAATCCcat-aaaaaggaaaacataATAAAAATAGAAT
i caePb3.Scfld02_0      C 0 I 7750
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8109098 736 + 21540570 I

a score=-22157.000000
s ce10.chrX             3059911 200 + 17718866 CATTGTT-------------------------------------------------------------ATTGTTATTGAGTGGAGAAGCGTATGAAT-------------TTTTGAAATCCTCATACAAAAA-----------------------------------CGC---------AACACAACTTTTAA--------ATTCAG---TTAAAATCCTT----------------------------------------ATTGTTTCATCAGTC-----TTCCCCATA-----------------AATTTTAGA---------------TTTTCCCGACTATCCGGATTTCGGTTGTTAGTCCCTGTTTC------------------------------TCTAAAAATTATTCATTAAACCAAAAGCACCCAA----------------------------------------------
s caeRem4.Crem_Contig0   248884 460 -  4500979 agcTTTTGGCTTTGATGGAAAATGCCAAGTGTATATGTTGGAAATAGAGGAAAGGATGAATCCAGAAGATGAGTGTTCAATGAAAAGATGAAGAGTAGCTATAGTGAGTATACCGAAATTCAatcagaaata------tcaaaattcaaaaggtCGCGATGAATGATAGCcat------aaaaatatttagaacCACTGTTGTCTAGAATTCAGAAGTATTTGTAA---ACATTTACTGTACTATTTGGACGTAAAATTGAGTTGAATTATCAATCGAACTGTTCTGAAACTCAATTACTAATTCTTAGATTTTCACATTTATGTTTAAGttttttcctttatttcatA-----GTTGATAAAAAACTtctcataaaattttgtttcggAATTTCCAcggaatttctgaattttttaatgtattAAA--CATTCAATTCTCCACTCGGTTAATTCTTCACTAATAACCAGAATAATACcaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351678 298 - 33334924 --------------------------------------------CAGAAG-----------------GATGATCGttcgattcaaaaacataTAGAA--TATTGTGTTGTTCCAGATATTACAATAGAAACAGTCTGCCTCTGATTTAAACAGTTG-----------AGCCATCGagcgaaaataaatttaaactaattgaatttcga--ttGGAAGGCTTTGCAGATCAcaagtatttttctttt---------------gttacagcattattc-----attttgatacTCA-------------AGTTTTCCA---------------TCTCTCGAACATTCCATa-----actgttatttttcttctcaaaacacGT---------------------TCCCTCAATTTCCCAAAAAGTTAA----ATTGAA-----------GACATCTATTCATTCA-------------------
i caeSp111.Scaffold629  I 50 C 0
e caePb3.Scfld02_0      1396920 7750 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8109098 736 + 21540570 I

a score=-194.000000
s ce10.chrX             3060111 11 + 17718866 --------TTCTTTTCAAT-------
s caeRem4.Crem_Contig0   249344 26 -  4500979 tttttttattattttgaaataatgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351976 11 - 33334924 --------TTGCTTCGAAA-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1404670 11 +  4147112 --------ttctctttaaa-------
i caePb3.Scfld02_0      I 7750 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8109098 736 + 21540570 I

a score=76561.000000
s ce10.chrX             3060122 278 + 17718866 AACTATGTAATACCCGGAACGTTTTTGTGTTCAC-----TGACTCAGCT---TCAAATTAAA-CTTGTCAAGTGGTGGTCTAT--GGAATAGACAATGAGTGA-----GGGGTACAGTAATGAATT----GAG-----AAAAAAAGTGGAAATAATTAATAACAAAAATTACATAATATTTGAGGGAATATAATAGTTTGAGAACAAAGG---------TTTCGTGTTGTTAGATCTGC------GAGTGGTGGCCCCACCTTTCCCGC--------------------------AGTATATGCACAGTTTAATCAGCTGTACAAAATTTGACAACAGAGGAAT----------------
s cb4.chrX              8109834 311 + 21540570 aaccGTATAATACCCGGAACGTTTTGGTCCACCT-----TGACTCAGCTTGACAAAATTAAA-CCTGTCAAGTGGT-GTCAAT--AGAATAGACAATAAGGGGTGCAGGTGGTACAGTAATGAATTGCGAAAATTGTTAGAGAAAGCAAAAGAA-----------ACA-TACATAGTTTTTGAGGGAATAC-----TTGGAGAACAAAAGTGGCGTGGTTTTCA---TGTTCAATCTGTACTGACTGGTGTTGGCCcgttttgtctttttctcttttctggTGATTTGTG-----TGTTTATGTACAGTTTAATCAGCTGGATGGGGGA-------GAAGAGAAGCCATGAG--------
i cb4.chrX              I 736 C 0
s caeRem4.Crem_Contig0   249370 292 -  4500979 aattgtaTAATGCCGGGACCGTTTCTGTGCCCTTTCATCTGACTCAACT---CAAAATTAAACCCCGTCAAGTGGT-GTCAAT--AGAATAGACAATGA---------GTGGTACAGTAATGAATTGCGGTAA-----AAAAGAATTGGACGAA-----------AAATTACATAGTTTTTGAGGGAATAG-----TTTGAGAACAAAGG---------TTTCA---TGTTCGATCTGCA-----TCGCGGCGGCAACCTCCGTCTCTTTC--------GATACTGTGTGTATAATGTATGTGTACAGTTTAATCAGCTGGATAGATTG-------GGAGGAAAAGAATGAGCTGGGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   351987 258 - 33334924 CATTGTATAATACCCGGAACGTTTTTGCGCCCCC---ACTGACTCAGCT---CCAAATTAAA-CCTGTCAAATAGT-GTCAAT--AGAATAGACAATTGATG------GTGGTACAGTaatgaatt------a-----gaaaaaaagggagaag-----------aaATTACATAGTTTTTGAGGGAATAC-----TTTGAGAACAAAGG--------TTTTCA---TGTTCAATCTGTC-----GAGCGAGCGAGACCTccgtctctct---------------ttctg-----tgtATGTGTACAGTTTAATCagctgaagagaaaa-------aaaggaaa----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1404681 272 +  4147112 aattgtataataCCCGGAACATTCTTGTGCTCCC---ACTGACTCAGCT---CTAAATTAAA-CCTGTCAAGTGGT-GTCAATAAAGAATAGACAATTGGTG------TTGGTACAGTAATGAATT--GACGa-----gacaaaaatggaagagagagagatggaaaatgacatagtttttgagggaaaac-----gGTGAGAACAATAG--------TT-------------AAATGTT-----TGTCCGACGTCATCTCTGTCTCTGCA-----------AAACTGAG-----TGACTATGTATAGttgaatcagttgaaaaataaatgg----aaagaaaa----------------
i caePb3.Scfld02_0      C 0 I 307
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=7637.000000
s ce10.chrX             3060400 36 + 17718866 ------------TATGGTCGACTGTTTTCAGTTGGTATTTCGCAATAT
s cb4.chrX              8110145 26 + 21540570 ----------------------TGTTTTTATTCGGTATTTCATAATAt
i cb4.chrX              C 0 I 1210
s caeRem4.Crem_Contig0   249662 36 -  4500979 ------------TATGGTGTGCTGTTTTCACTTGATATTTCATAATAT
i caeRem4.Crem_Contig0  C 0 I 80
s caeSp111.Scaffold629   352245 48 - 33334924 tgagcTGGGAACTGTCGAGTGTTGGTTTCATTCACTATTTCATAATAT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1404953 307 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I

a score=136.000000
s ce10.chrX             3060436 6 + 17718866 ATTTTT
s caeSp111.Scaffold629   352293 6 - 33334924 CTGTTT
i caeSp111.Scaffold629  C 0 I 330
e caePb3.Scfld02_0      1404953 307 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8110171 1210 + 21540570 I
e caeRem4.Crem_Contig0   249698 80 -  4500979 I

a score=0.000000
s ce10.chrX             3060442 1170 + 17718866  
e caePb3.Scfld02_0      1404953  307 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8110171 1210 + 21540570 I
e caeSp111.Scaffold629   352299  330 - 33334924 I
e caeRem4.Crem_Contig0   249698   80 -  4500979 I

a score=427.000000
s ce10.chrX             3061612 25 + 17718866 TTATCTTTCCAACTATCTATATAAC
s caeRem4.Crem_Contig0   249778 22 -  4500979 TTATCTTTTTACCGggttatat---
i caeRem4.Crem_Contig0  I 80 C 0
e caePb3.Scfld02_0      1404953 307 +  4147112 I
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8110171 1210 + 21540570 I
e caeSp111.Scaffold629   352299 330 - 33334924 I

a score=-1553.000000
s ce10.chrX             3061637 59 + 17718866 TCTTCAAATTTATCCATAACC------------TGACACTTCCGGCAG--------TTCCATCAA-TTGTATTCGTTAAC
s caeRem4.Crem_Contig0   249800 63 -  4500979 ---------tttttaaataagatGTCAATCCGTTAATACTTCCGGCATCCAACTCCTTTTGTGAC-----GTTTAAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1405260 59 +  4147112 TCCCCAGTTTTCCCCAATAAA------------CAACACTTCCGGTGT--------TTCTGTGACCTCATATTCATCAA-
i caePb3.Scfld02_0      I 307 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8110171 1210 + 21540570 I
e caeSp111.Scaffold629   352299 330 - 33334924 I

a score=3194.000000
s ce10.chrX             3061696 19 + 17718866 CTGCCGCTGATCGGTGCAA
s caeRem4.Crem_Contig0   249863 18 -  4500979 CTG-TGTTGATCGGTAAGA
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold629   352629 19 - 33334924 CTACTGCTGAACGGTGAAA
i caeSp111.Scaffold629  I 330 C 0
s caePb3.Scfld02_0      1405319 11 +  4147112 --------GAACGGTAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   48263 1136 +   227596 I
e cb4.chrX              8110171 1210 + 21540570 I

a score=28347.000000
s ce10.chrX             3061715 28 + 17718866 GCTATAAGTCAA-----CA-TGTCACATAAAAAG
s cb4.chrX              8111381 33 + 21540570 GCTATAAGTCAAACACGTG-TGTCACATAAAGAA
i cb4.chrX              I 1210 C 0
s caeRem4.Crem_Contig0   249892 28 -  4500979 GCTATAAGTCAA-----CA-TGTCACATAAAAGG
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold629   352648 28 - 33334924 GCTATAAGTCAA-----CA-ATTCACATAAAAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1405330 28 +  4147112 GCTATAAGTCAA-----CA-TGTCACATAAAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   49399 29 +   227596 GCTATAAGTCAA-----CAGTGTCACATAAAAAG
i caeJap4.Scaffold17545 I 1136 I 60

a score=303.000000
s ce10.chrX             3061743 21 + 17718866 ----GTGCCTAA-----AAA---------GGACACAATT
s cb4.chrX              8111414 31 + 21540570 -GAAGCGCACATCATAACAATCA------AGAGCC-ACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   249920 26 -  4500979 -GATGTGCACAT-----CAATTG------AAAGCC-ACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   352676 33 - 33334924 -GATGTGCATAA-----CAATTGAGTCAAAGAGCCATCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1405358 34 +  4147112 GGAGATGCACAA-----CAATTGAGTCAAAGAGCCTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   49428 60 +   227596 I

a score=72686.000000
s ce10.chrX             3061764 393 + 17718866 GCCGGGTGGC-TTTGATAAACACCGCTTCACACACTTGAAGGAGTCGTTTACCTGGTCTCAATTGCCATTGTCAAA------AAAAAAGAAGCGT----CTCTATTGCGCAACAG----------------AAC-AC--AATAGAGCAGCCACGTGTGTGCTGGTCCCACCGGTCTGCGACACCTT----TCCG----GGAGTGTCCTTTAATCTAA-TTATTTATGTTGGC-AATTGTAATGAGC---------TG-TATGGAAA-GGATACGA-TATTATGTAATAGAACC-TGCTTACCCGGGAGATTTC---AAAGGCGGCTT-CTGTCTCCTAAACAAGC--TC------------------------ATATTCATA---------------TTGCCAGCTTTTTTCTTGTT---------ACTGGGTGTCAAGATGTATGTTCACAATTAAGAGTGGGGGAAATGGCAAATGACAATTATCTCTAATGCATTTT
s cb4.chrX              8111445 356 + 21540570 GTCGGCTCGTGTTTGATATCTACCGCTTCGCGTGATTGAAGAAGTCGTTTACCT-GTGTCAATTGCTATTgttaaaaatgggaaagaGGAAGCGTTTGGTGGTGTTGCGCAACAC---------ACACATAAAC-AATGAAGAGAGCATCCGC----------CTTTCCTTGGT----GACACCCTTTCACCTGTATAGAGGTGTCTTA---------TTATTTATGAAAGC-ACCTCTAATGAGGCTCTATAAGGG-TGCGGATCAGGAAACGG-TATTATGCAATAGAACC-AGGTTATTAGAAGAAATCA--TAAGAGCGGCTTTTCCTTCCTTGTATAAGCAATCCTTATTAATCTTGTA-----------------------------------------------CCTTCT-------------------------------------------------------AAGGTCTCAA--ATTGCCAATCTATGCc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   249946 413 -  4500979 GTCGGCTCGT-TTTGATATCCACCGCTTCACCCAATTGAAGGAGTCGTTTACCT-GTGTCAATTgctattgtttc-------aaaaaggaagCGT----TAGTGTTGCGCAACACATTCAACCAACACAGAAAC-AC--AATAGAACATCCGC--ATGTGCCGCTCACGTTAGT----GACACC---TCACCTG---AGGGTCCTCtcataatttaatttatttataaGAGAGAACGATAATGAGGAGCTAT------------TC----AACGGATATGATGTAATATAACCAAGGTTATTATAGGACACTG---AAGGGCGGCAT-------CTTATGTAAGC--TCTTTAATATTGTTGTATACCC-GGCTTTCTCATA---------------TAGCATAGCCTGTTTCTTCTCTTTAGATTTTTTGGCATGTACATATATATTCACAATTA---------------GAAGATGACAATTATCCCTAAtgcatttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   352709 382 - 33334924 GGCGGCACGT-TTTGATATCCACCGCTTCACACAATTCAAGGAGTCGTTTACCT-GTGTCAATTGCTATTGTTA--------AGAAAAGATGCGC----ATGTGTTGCGCAACAC-------CAATAACGAGACAACACAATAGAGCAGTCAC--GTGGGTAGACCACCTT-------------------TCCG---ATGGGTCTCTTATAATCTAA-TGATTCATAACAGGAAATTGTAATGAACCGGCAT---TG-AGTGGATT-GGATACGA-TATGATGTAATAGAACC-AGGTTAATCCGAGACAATG---AAAGGCgg----ctcttttttgaatcagc--TTCTTAATAAGCTGATTTT----CATATACTCACA---------------TTGCtttctcag---ttttt-------------------gttCGGTGTGTACACAATTA---------------GGAAACACCAATTATCCCTAAtgcatttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1405392 391 +  4147112 GGCGGCACGT-TTTGATATCCACCGCTTCACACAATTGAAGGAGTCGTTTACCT-GTGTCAATTGCTATTGTTAT-------AAGAAGGAAGCGT----GTGTATTGCGCAACAC-------TAATGAAGAGAC-ACACAATAGAGAGCAGGG--ATGGTCCGTCCACCTT-------------------TCCG---GAGGGTATCTCATAATCTAA-TAATTCATAACAAT-GATTGTAATGAACAGGGTT---CG-TTTGGTTC-GTATACGC-AATGATGTAATATAACC-AGATTATTTTGAGCAGGTG---AAAGGCGGCAT-CCCCTTCTTGTATAAGC--TCTCTAAGAAGACGATTTTTCAACGCTTTCTCATA---------------TTGCCAGCCCGGtttttttt-------------------GTCCTATATCGTAACAATTA---------------GGAAATGACAATTATCCTTAAtgcatttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   49488 424 +   227596 GGCGGCTCGT-TTTGATATCCTCTGCTTGAGACAATTGAACGACTCGTTTACCT-GTGTCAATTGCCATTGTCG--------GAAGAAGAAGCGT----CGCGATTGCGCAACAC----CATCAACAGTGTCTC-GCACAATAG-----------ACGTCAAGCTCAAGCGAGC----GGCACATG----GCTG----ACACCTTCTCATAATCTAA-TTATTTATATGTCAGGTGGATGATGATGCTCGTC---CGACGAGGATC-GGATGCGC-TGTGATGTAACATTACC-AG--TCTTATGAGATAATAAGCAGCAGCGGCTTGTCCTTCCTtccgcaaaa--aattcaatatacCCTCTTT----TGGATATTAATAATATTTGCCTGCTTGCTGCCAACCCGGTTTTCTTG-------------------CCTATGGAAGTGGAAAACTTTGTGTTCTTTCATTGGGAAGTGTCAATTATCCTTAATGCATTTT
i caeJap4.Scaffold17545 I 60 I 134

a score=33877.000000
s ce10.chrX             3062157 142 + 17718866 CATTTCCACTTCCAATTTTCCTTTTTTTTTCAACTTCCCATTTTTCAATTTGTAACTGTATCGTTTTCCAGTCAATC-----------------------TTCCTGCGCGCCC--AATATTTTACGCTACGTTG---AGTTGAAAGTGTC----TCCG----CTTTTTGCACCTCTTC
s cb4.chrX              8111801 115 + 21540570 cgc------------ttttttttccttcttc------------ttcccctttt-------tttttttcttacctttc--------------------ttttttttgcgcA-----AATATTTCACGCTACGTTGGCTGCTTGAAAGTGTCATCTTCCC----ATTTTTGCACCTC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   250359 136 -  4500979 cat------------ttttcatctcTCTTCC------------TACAATTTGTAACTGTATCGTTTTCAAGTCTTCCAATTTCCACCcatctccacttttttctcgcGCA-----AATATTTCACGCTACGTTG---GCTTGGAAGTGTC----TTCC----CTTTTTGCACCTT--A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   353091 123 - 33334924 cat------------atttcattt-------------------tcccatttgTAACTGTATCGTTTTCAagtcttc----------cattttccacttttttctcgcgCG-----AGTATTTCACGCTACGTTG---GCTGGGAAGTGTC----TTCTCCAGTTTTTTGCACCTC--C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1405783 129 +  4147112 cat------------ttttcattt-------------------tcctatttGTAACTGTATCGTTTTCAAGTCGTCA--------TCCAtttccactcttttttctcgcgGTAAAAATATTTCACGGTACGTTG---AGTTGGAAGtgtc----ttcctc--ttttttgcaCCTC-TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   49912 134 +   227596 I

a score=181970.000000
s ce10.chrX             3062299 513 + 17718866  
s cb4.chrX              8111916 521 + 21540570  
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   250495 375 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold629   353214 437 - 33334924  
i caeSp111.Scaffold629  C 0 I 9
s caePb3.Scfld02_0      1405912 436 +  4147112  
i caePb3.Scfld02_0      C 0 I 116
s caeJap4.Scaffold17545   50046 435 +   227596  
i caeJap4.Scaffold17545 I 134 C 0

a score=-29337.000000
s ce10.chrX             3062812  99 + 17718866 GAAACTATAAACAGAACTAATTTGAGAAAAGCGACAAAAATATGTATTCATTCAGAAAAAA------AGGAA-----------ACAGAGTGTTT-----------------------ACAACAATGATTGAAATTATTT
s cb4.chrX              8112459 123 + 21540570 gaatgttt---ccgaaaaatttttcggaatgaaattccgaccggaattttttcgaa-------------gcatttttttcggaattaaattttttcgagtacAGTATGCCAAGGAAAAATTTACCTACGGGTCTCGAAC
i cb4.chrX              I 22 I 12
s caeRem4.Crem_Contig0   250884  30 -  4500979 TAatgttt---------------------------------------------------------------------------atttgattttt----------------------------------agaactCAAAC
i caeRem4.Crem_Contig0  I 14 I 8
s caeSp111.Scaffold629   353660  50 - 33334924 -----------------------------------------ctctctctttttaga-------------GCA-----------ACAAGACtttt------------------------ttttATCGGAAGATATCATTC
i caeSp111.Scaffold629  I 9 I 20
s caeJap4.Scaffold17545   50481  98 +   227596 TggaatgaaaattgaattgtaGTTTGAAACGAAAACGCAAACGCTTCCAACCAAAAATGAGCAATTCAGcca-----------attttgttttt--------------------------acagTGAAACAGTTA----
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1406348 116 +  4147112 I

a score=-115030.000000
s ce10.chrX             3062911 200 + 17718866 GAAATTAAATAAAAAACAATCACCGTATTTCTACAGGTTACTGAAATC-------------GTGATTCG-----TAACAAAAATTTACCGTAACTTCT-ATAACTTTTTTTTGCCGAAAAATACGTTGAGTAACCTT--------------TTGTCGATTTTGTGAA--------------------------------------------------------------------------------------------------------------AAACAAAC-----------------CGACTAAGCTTATATATGGAGATTAGTAAGATGGTCTTTCTGCAAGT---------------AAGTGAAAAAC
s cb4.chrX              8112594 340 + 21540570 gatatt---ttttgcgCTGTCGGAATCTTTCTGTCAACTTTCGAAAGATTCTTGCGTTTCTGTgataga-----aaactgaaat-----ttccctctg--taaaattcgaattttgaa--atattccga--aacttccgaaattccgaaaattttgaaatcggaatattccgaaattccgaaattccgaaaaaggccattccgaacatccctggagCTTTAGTATCACGATTCCAGTGAGCGATATcgaacatttgtcaactgataaaatattggtgacatCATGATACACAAATTATTAGtcgacaagtttttgataac----tttt----ac----aggCCGAGAag----aatgagctcaaatttgaaggaG
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   250922  35 -  4500979 GATATT--------------------------------------------------------------------GAACCGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCACA----------------------------CGGTATC----TTTC----A------------------------------------------
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   353730 158 - 33334924 -------------------------------------------------------------TTAATCGATGGGCTAAGTGAGAT-----GGCACAGTG-ATAAACTATGTTTCCTTAT--CTATCTTCA--TATTGT--------------TTGTAGATGTGAAGTACTC-----------------------------------------------------------------------------------------------------------GAATCAtt-----------------atttgagattttcatAAG----TTTc----gatcttcttctgaaagcACACAACTGTTTGCAACATGGTATGG
i caeSp111.Scaffold629  I 20 C 0
s caePb3.Scfld02_0      1406464 153 +  4147112 -------------------------------------------------------------ggaattga------aaaaaaaac-----gtttttgtg-aTAAGGACCGTATCCTGATAATTAT-TCCA--TTTTGc-----------------tggaattcaagtttta-----------------------------------------------------------------------------------------------------------GCAGAGTT-----------------TGTTCAAACTTCACCACT----TTACTGAAACTCTGATTCCGAAAGT-CAAAGCATGTTCCATTGTGATTGAA
i caePb3.Scfld02_0      I 116 C 0
s caeJap4.Scaffold17545   50579 147 +   227596 -------------ACAAAAACATCAACTATT------------------------------GCCATCAT-----CATCTTGTAT-----GTTTTTGCATGAAATATTCGTTTTCTTG---CTATTT-----AATCGT--------------TTTCAG------------------------------------------------------------------------------------------------------------------------ACACTCTT---------------------TATTCTTGGACAAA----C-------AGAGCTAATTAGGAAGA-ATAACCAACCACGAATGTGAGAAGC
i caeJap4.Scaffold17545 C 0 I 98

a score=-15062.000000
s ce10.chrX             3063111 37 + 17718866 TGTGAAAATGAAACTTTAACATTTCGA--------------------------GCACCAACCT---------
s cb4.chrX              8112934 65 + 21540570 TGA-------TTGGGTTGCTATTTAAGCAAAAAGCAGAAACGGTGTTTTTGTTATGTAGATTCTGACACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   250957 12 -  4500979 -----------------------------------------------------ATATATATTCTG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   353888 31 - 33334924 TTTAT-----TCCATTAGCCACTCCGA--------------------------GTATAAACC----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1406617 37 +  4147112 TGTGCAGACGCCTTCTTACTATTTCTT--------------------------GAATCGAATT---------
i caePb3.Scfld02_0      C 0 I 52
e caeJap4.Scaffold17545   50726 98 +   227596 I

a score=-11992.000000
s ce10.chrX             3063148  58 + 17718866 GAAAATTAGAGTTCGATATCCAGCTTTGGCAGAATAATATTCCATATT---------------------------------------GTTTATTTCC-------------------
s cb4.chrX              8112999 100 + 21540570 CAAACTTATGGAACGTT----------------TCAGTAATTCATGTTATTCaacaatttcaacatttttttcgaacatatGTGTTCACATATGTTTCAACATGTTACAGTAACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   250969  27 -  4500979 ---------------------------------CCAATAGCCCATATT----------------------------------------CATATGTCC----------------CAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   353919  27 - 33334924 --------------------------------------ATCTCTCTTT----------------------------------------TAT-TGTCCTAAACTGTC----------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1406654  52 +  4147112 I
e caeJap4.Scaffold17545   50726  98 +   227596 I

a score=-8664.000000
s ce10.chrX             3063206 13 + 17718866 --------------------------------------AAGTTTGACAATT
s cb4.chrX              8113099 51 + 21540570 ATATTTGACAGAGATTTCTCAAAAGGTACAAAATAGTTTAAAATCTCGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   250996 29 -  4500979 AGATTTTAT-----TTTGTCA-----------------TAAATTCATGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   353946  6 - 33334924 ---------------------------------------------ATAATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1406706 13 +  4147112 --------------------------------------GATTCTCATGAAT
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold17545   50726 98 +   227596 I

a score=213540.000000
s ce10.chrX             3063219 422 + 17718866  
s cb4.chrX              8113150 449 + 21540570  
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   251025 395 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   353952 400 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1406719 387 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   50824 354 +   227596  
i caeJap4.Scaffold17545 I 98 C 0

a score=13410.000000
s ce10.chrX             3063641 37 + 17718866 GAACGTGCAAAGCATTCGTTTAACACTTTTCTACAGT
s caeRem4.Crem_Contig0   251425 36 -  4500979 -ACCGTGCTAAATACTCATTTAACagttttctacagt
i caeRem4.Crem_Contig0  I 5 I 10
s caeSp111.Scaffold629   354352 34 - 33334924 --ACGTGCTAAACTctcattcatta-ttttctaccgt
i caeSp111.Scaffold629  C 0 I 10
s caePb3.Scfld02_0      1407106 34 +  4147112 --ACGCGTTTAACTCTCATTTAACA-CTTCCTACAGT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17545   51178 33 +   227596 ---CCTTCTAAGCACTCATTTAACC-TTTTCTACAGT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8113599 58 + 21540570 I

a score=679196.000000
s ce10.chrX             3063678 1185 + 17718866  
s cb4.chrX              8113657 1147 + 21540570  
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   251471 1174 -  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629   354396 1194 - 33334924  
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1407150 1211 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17545   51211 1239 +   227596  
i caeJap4.Scaffold17545 C 0 I 21

a score=-2272.000000
s ce10.chrX             3064863 34 + 17718866 CCTGCTTTTGGTCCCAAGGTTCGGCAGCG------TTGAA
s cb4.chrX              8114804 28 + 21540570 CCtggtccccc------------ccccccttcctTCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   252645 39 -  4500979 CCTGCCTTTCTTC-AGAAGGTGGTcctcattctttttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   355590 33 - 33334924 CCTGC-ACTCTTA------TTCCAcatttgttcttttgaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1408361 37 +  4147112 CCTGCTTCTCTCA---AAGGTCCTCtgtgttctttttgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   52450 21 +   227596 I

a score=389028.000000
s ce10.chrX             3064897 877 + 17718866  
s cb4.chrX              8114832 821 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   252684 853 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   355623 876 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1408398 873 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   52471 967 +   227596  
i caeJap4.Scaffold17545 I 21 I 94

a score=-7156.000000
s ce10.chrX             3065774 16 + 17718866 TCCTAGC-----------------------TCACTTTTT
s cb4.chrX              8115653 38 + 21540570 GTTGACCTTTTGCTGTAAATGGCATTTAGATGGTGTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253537  7 -  4500979 TCCAACC--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   356499 24 - 33334924 TCCAACT---------------GGTTATGCTGACCTTTT
i caeSp111.Scaffold629  C 0 I 125
s caePb3.Scfld02_0      1409271 24 +  4147112 TTTCACT---------------CAATGGTATGACCTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   53438 94 +   227596 I

a score=-19961.000000
s ce10.chrX             3065790  89 + 17718866 CAAAAAATGTGGAGA----------AATTAGTAAAACTTATTTCTATGGTGTTCAAATGTCCAAAGAT------------------------CATGATAAAACCTTTCAAATAGAAAT------------------------------------------------------------------------TGGAA---------
s cb4.chrX              8115691 199 + 21540570 CAGATAACAGAgggaatttagtgggatttagTAAAATTTA-----TTGAGatggaaatgaaaatgaatatCTGTTCGAGGGGAACCTTCTCATAGTTTGGGAACTGAGGaatataaatttgaaatatataaaaatcattgatttttcagaaaatcttctCTGCAAATTTAAGGTTCAATACAGACCCGGACAAATAGGTGCCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253544  37 -  4500979 -------------------------AGTTAGT-------------TTGACCTTTCTGTGAAAATGAAT--------------------------------------------------------------------------------------------------------------------------CAGATGG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1409295  51 +  4147112 ---ATAAAGGGACGGATGT------AGATGGT-------------GTGAAAGATAAATAATGAGGGAT--------------------------------------------------------------------------------------------------------------------------TAGGA---------
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold17545   53438  94 +   227596 I
e caeSp111.Scaffold629   356523 125 - 33334924 I

a score=-2430.000000
s ce10.chrX             3065879  55 + 17718866 ATTTTGGTACTTTTGTG----------TGAAT------------------------CGAACTCAGTTTTC-----------ACCAGTAACAATAAACATT
s cb4.chrX              8115890 100 + 21540570 GTTTTTATTCTTCTGTGAAAAATACAGAGAATTCTTAAATAAAAGCCCACCCTACAcgaactcaattatctaggtttcttcaacagatataaaaaatttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253581  50 -  4500979 -------------TGTGAAAGATA---AGCGT------------------------CGAACGT--TTATTTGG--------AGGAGAACTAACAGGTGTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1409346  56 +  4147112 I
e caeJap4.Scaffold17545   53438  94 +   227596 I
e caeSp111.Scaffold629   356523 125 - 33334924 I

a score=-5869.000000
s ce10.chrX             3065934 69 + 17718866 ---TCTCGCAATAAAAATTTTCCAAAATTTTTTTTCAAAAATGATATGTAGTAATTTAGCA----AAATTTTGACA
s cb4.chrX              8115990 59 + 21540570 tcaattgatga--agCA-----TTGGTgtttttttgatgaataa----------cttagcagttgacaatttgtca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253631 39 -  4500979 T---------------------TGGGCGTTTAGCTAACTAATTA----------TTTAGGA----ACGA--TGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1409402 53 +  4147112 ---tttcaaaatgaaaa-----caagtgTATTTCAGAT--ATGAT---------TTTAAGA----ATACTTCAACA
i caePb3.Scfld02_0      I 56 I 252
e caeJap4.Scaffold17545   53438 94 +   227596 I
e caeSp111.Scaffold629   356523 125 - 33334924 I

a score=-20832.000000
s ce10.chrX             3066003 293 + 17718866 TT--------CATAGTAAAGGCACAAATTGTTTTTCTGAGTGGGTCTCGCCACGATCTCAGTTAAAA--TGCTTGCTACAGGCGCGAATATATACAAATTT-----------GTTGTTAACTTGATAATAAAATTAAAGT-----TTGTGAACTTTTAAATTTTAAAGTGAACC--------------------TAGAAAAAATAGTC--GATAGTACATATTTTGAT--GCCTTTCAAATTAGAAAATTTTCAAGAATTACTATC---ATGCTACATTTTTCAATTTATAACATTTG---ACTTAACAATATATAATTGCTCTCTCTAACTCATATTGCT-------------------GAAATGGT
s cb4.chrX              8116049 359 + 21540570 cagaaatcgagataattga-gctcaaa--actcTATAGAGTATGTCTCCATGAGATTATAGACAATAGTTAACTTTTGAAGTCTAAGAAATATTCGAGATTATATCGTTCTGTTTGGTAATTTG-TGGTAGTAAGAGAGTTACGTTTCTGTATCCCCCATTTTTTGGCCATATCCATCATATTTCGTTCGTTAGCAGAAAATAAGCTCTTGAAATGTCAAAATCGGATCCGAAATGAAAATTGTGA-CACTTCAA-AACCGTTTACCTTGTTTTGTAGCATTC-CTacagaaaatttgtcaact--acaaaatcaaagttttaattttgattaGTACACCCGGAATTTTTTAGACATTGTGAAATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253670 134 -  4500979 CA---------------------------------------------------------AGACGATA----------------------------GGGATT------------------------TATTAGCAAGTAAGc------------------------------------------------------ctgaaaaaaagttc------ggtAGAATTCTGAT------TTAAAATTTCGATCACTACGATAACtgttgaa---aattgttattctCC-GTCCAGAAAGGTTT----CT--CCAAA-------------------------------------------------TGAACAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1409455 252 +  4147112 I
e caeJap4.Scaffold17545   53438  94 +   227596 I
e caeSp111.Scaffold629   356523 125 - 33334924 I

a score=-3061.000000
s ce10.chrX             3066296 31 + 17718866 ATAAATTTTTA--------AGGATAAAAAATCATAGCAG
s cb4.chrX              8116408 34 + 21540570 --ATACTTCTTTTTCAGACAAGAATAAAAGACA---GAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   253804 19 -  4500979 --ATGACTCcc---------------agaaaca---aat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   356648 25 - 33334924 ACAAATTTTCT-----------ACCagaaatca---cat
i caeSp111.Scaffold629  I 125 C 0
e caePb3.Scfld02_0      1409455 252 +  4147112 I
e caeJap4.Scaffold17545   53438 94 +   227596 I

a score=1773.000000
s ce10.chrX             3066327 6 + 17718866 CTTCCA
s cb4.chrX              8116442 6 + 21540570 ATTCTA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   253823 6 -  4500979 tttttg
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   356673 6 - 33334924 tttctt
i caeSp111.Scaffold629  C 0 I 4
s caeJap4.Scaffold17545   53532 6 +   227596 CTTCCA
i caeJap4.Scaffold17545 I 94 C 0
e caePb3.Scfld02_0      1409455 252 +  4147112 I

a score=237901.000000
s ce10.chrX             3066333 742 + 17718866  
s cb4.chrX              8116450 844 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   253831 756 -  4500979  
i caeRem4.Crem_Contig0  I 2 I 19
s caeSp111.Scaffold629   356683 757 - 33334924  
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1409707 740 +  4147112  
i caePb3.Scfld02_0      I 252 C 0
s caeJap4.Scaffold17545   53538 733 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-1984.000000
s ce10.chrX             3067075 18 + 17718866 GATGTGGCTCGTCAACCA----
s cb4.chrX              8117294 12 + 21540570 ------GATCGTCACTTC----
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold629   357440  9 - 33334924 ---------CGCCACTTG----
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1410447  9 +  4147112 ---------CGCCACTTG----
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17545   54271 15 +   227596 -------GATGGCACTTGATTG
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   254587 19 -  4500979 I

a score=123335.000000
s ce10.chrX             3067093 233 + 17718866 CCCCTAATGTATCATTGACTGCTG--CTCTCAATAAAAAGATTACAAGGGAATTAGCTCAGGGGGCTGGT---------GGCAATTGATTCAATTTACACTCAGCACACACACACACACTGACAAAT-ACACGTATACACCTGTCGTCT-CCTTTGTCCGATGA-GCTC-CCGGATGAATAAAAAATGAAG-----ATGATGCTAATTTGGGAGAAATGTGTATGATATGGGGGAAGGCA--------------AAAGTTTGACACC
s cb4.chrX              8117315 225 + 21540570 TTCATAATGTATCATTGACTGCTG--CTCTCAATAAAAAGATTACAAGGGAATTAGT-C-GCAAGCTGGTGCTGGTGGTGGCAATTGATTCAATTTACGCTAG-------CAAGTCCGTATACAAATCACACGTATACACCTGTCGTCCGCTTTTGTTCGATGA-GCTCTCCGGATGAATGACAAAT-CAG-----ATGATGCTAATTTAGGGAG---------GAGGGTGGTGGGGGC---------------AAAGTTGGAATAT
i cb4.chrX              I 9 I 98
s caeRem4.Crem_Contig0   254606 206 -  4500979 CCCATAATGTATCATTGACTGCTGCTCTCTCAATAAAAAGATTACAAGGGAATTAGC-C-ACAGACTGGTGTCGT---------TTGATTCAATTTACACGAA-------------GGCACACAAAT-ACACGTATACACCTGTCGTCT-CTTTTGTCCAATGA-GCTC-CCGGATGAATGACAAAT-CAG-----ATGATGCTAATttagggaga--------gagaaaaaaggaggca--------------AAAGTTGG-----
i caeRem4.Crem_Contig0  I 19 I 20
s caeSp111.Scaffold629   357462 220 - 33334924 CTCATAATGTATCATTGACTGCTG--CTCGCAATAAAAAGATTACAAGGGAATTAGCCC-AGACACTGGAT--------GCCAATTGATTCAATTTACACGA--------------TGCTCACAAAT-ACACGTATACACCTGTCGTCT-CTTTTATTCAATGAGGCTC-CCGGATGAATGACAAAT-CAG-----ATGATGCTAATTTAGGAGGA--------GAGACAACTTTAGCCA-----TGTGATGCTAAAGTTTGACAAC
i caeSp111.Scaffold629  I 13 C 0
s caePb3.Scfld02_0      1410467 224 +  4147112 CTCATAATGTATCATTGACTACTG--CTCTCAATAAAAAGATTACAAGGGAATTAGCTC-GTCGACTGGTG--------GGCAATTGATTCAATTTACACGA--------------TGCTCACAAAT-ACACGTATACACCTGTCGTCT-CTTTTGTCCAATGA-GCTG-CCGGATGAATGACAAAT-CAG-----ATGATGCTAATTTAGGGGGG--------AAAATAAGGGAAGTTACATTGTTTGGTGCTAAAGTCTCACAAC
i caePb3.Scfld02_0      I 11 I 214
s caeJap4.Scaffold17545   54286 193 +   227596 --TCCGGTGTATCATTGACTAGAG--CTCCTAATAAAGAGATTACAAGAGAATTAGC-----------GTT--------GGCAATTGATTCAATTTACATAGA--------------------ACAG-ACACATGTACACCTGTCGTAGCCTTTTGTTCAATGA-ATTC-CTGGATGAATGAT-GAT-GAGCTTCTATTCTTCCGATTGGAGGCAA--------ATTACAATATGTGC----------------AAAGTTTGGCG--
i caeJap4.Scaffold17545 C 0 C 0

a score=-74816.000000
s ce10.chrX             3067326 230 + 17718866 TTTAATCGGGATCATTGAACAGTTGATCA-----------------------CACTTGCA-----TATAGG----ACAAATTACAAAATTGTCTAGTTCTT-----------------------GATTTTCAGATTTTCGAGTA-TT----------------------------------------------------------------------TTACCGTATT---TCTTCTATTTTGCATCACGATTCTGTGTTTCGGCTGCTCACCAACTGGCAGAATATGTTTTTTACGTATC----TGATGATTTCCAAAG-----------------------------------GAACTAGGAT-AATACCTTTCAAGGTAAAGTAGTGGG---------ATCCTAAA
s cb4.chrX              8117638 391 + 21540570 CTGAAGTGGAATAAA-TATTTAGAGAACAAAAATGTCAAAGAGGACCTTTTTCActtctgaaatgttttgaatctATTACTTATGACAATACTCGCTTCTCAATCAGTGTTGCTTGAAagtaaaaat-----catttaaaagtt-ctgaaattaatttttttaaattctttatcaATAAACCAAGTAccatattttctctaaaagaAGCCCTTCCTAtaagtgcactttgagctcaatt----atctcgatttt-tgtgaaagatatcagaaatctgtccGAAGATGAAATTTtagtgataatatgatga-----aaattttattagccaacaatattttgatatctcgcatacgaaccgagataattgagctcaaagtgcaagtatagggtcGACCTCTATTAGAGA
i cb4.chrX              I 98 I 20
s caeRem4.Crem_Contig0   254832 133 -  4500979 CTAAAGATTGACAAA-CAATACGAGAGCA------------------------------------TGTTGA-------GCTCACACAAATAATTGCTCC---------------------GAAGAGT-----GGttacaaaatt-tt----------------------------------------------------------------------taagcATACT----------------------------------------------------CGACAGTGTGAT-------------TGGTGA-----GAAG-----------------------------------GCGCCAAGGT--------------------TACATGG---------ATTCATAA
i caeRem4.Crem_Contig0  I 20 I 17
s caeSp111.Scaffold629   357682 120 - 33334924 ----------ATAAATTAACCATTGACCA------------------------------------TGTTGC-----------------------GGTCCTC-----------------------GAT-----GGTTTCA-------T----------------------------------------------------------------------TCAGCTTACC--------------------------------------------------------------ATTTTCC--------AGATAA-----GAAG--------------------CCAAAGCTTCCGGAAAAACCTGAAT-----------TCTCGGAAATATAGAG-------TTATTCTAA-
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   54479 129 +   227596 ---------GGCGAA---TTCATTGAGCA------------------------------------TGCTCT---------------AATTGCCGGCTTATTTTC--------------------AGT-----GGTCTTACAATTAAT----------------------------------------------------------------------TTCGCTTATT----------------ATCATg------------------------------tgcaaaagttttttta---------ttccaa-----aaat-----------------------------------gcACACAATT------TCCCATAatctaaataaa--------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1410691 214 +  4147112 I

a score=273885.000000
s ce10.chrX             3067556 1072 + 17718866  
s cb4.chrX              8118049 1139 + 21540570  
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   254982 1036 -  4500979  
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold629   357802  940 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1410905 1086 +  4147112  
i caePb3.Scfld02_0      I 214 C 0
s caeJap4.Scaffold17545   54608 1010 +   227596  
i caeJap4.Scaffold17545 C 0 I 23

a score=1372.000000
s ce10.chrX             3068628 16 + 17718866 CAGCGTCCGT-TGACTG
s cb4.chrX              8119188 15 + 21540570 AA--GTATATAGAGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   256018 17 -  4500979 AACGGTATATATGACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   358742 17 - 33334924 AACGGACTGTCTGACTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1411991 17 +  4147112 AACGGAATATATGTCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   55618 23 +   227596 I

a score=1105414.000000
s ce10.chrX             3068644 2024 + 17718866  
s cb4.chrX              8119203 2143 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   256035 2073 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   358759 2035 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1412008 2060 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   55641 2009 +   227596  
i caeJap4.Scaffold17545 I 23 I 337

a score=1964.000000
s ce10.chrX             3070668 3 + 17718866 AAC
s cb4.chrX              8121346 3 + 21540570 AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   258108 3 -  4500979 AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   360794 3 - 33334924 AAC
i caeSp111.Scaffold629  C 0 I 169
s caePb3.Scfld02_0      1414068 3 +  4147112 AAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   57650 337 +   227596 I

a score=753.000000
s ce10.chrX             3070671 2 + 17718866 AA
s cb4.chrX              8121349 2 + 21540570 GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   258111 2 -  4500979 GA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1414071 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 I 587
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeSp111.Scaffold629   360797 169 - 33334924 I

a score=-1097.000000
s ce10.chrX             3070673 19 + 17718866 TTC------AGACAAATCCCGAAAC------
s cb4.chrX              8121351 25 + 21540570 GTGTCAATGTGGTGGATCTCGAAAC------
i cb4.chrX              C 0 I 153
s caeRem4.Crem_Contig0   258113 27 -  4500979 GTG----GGAGAAAAATCTCGACGTAGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeSp111.Scaffold629   360797 169 - 33334924 I

a score=634.000000
s ce10.chrX             3070692 112 + 17718866 TGCCGAATGCAAACTATGCACACTAGGCTTTTCCTAAAAGCAGAGTAACAACGCAATGCAACATGATCCAAACGAGCAATGATTTTCAGATAAAAAAG-CACTGAATAGAATT
s caeRem4.Crem_Contig0   258140 103 -  4500979 TGACGAAAG-----TTTGCAGTTTGAGCTGATTatgaatgcaaaaaagtaaaGTTGCAAGAAACCATTCTTACAA-----GGTTCTTAAATGAATGAGTCTCAGAATGAAATT
i caeRem4.Crem_Contig0  C 0 I 125
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8121376 153 + 21540570 I
e caeSp111.Scaffold629   360797 169 - 33334924 I

a score=0.000000
s ce10.chrX             3070804 24 + 17718866 CAATATAACTAGCTATGCTAGTGT
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8121376 153 + 21540570 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=460.000000
s ce10.chrX             3070828 51 + 17718866 AAAACCGCAGAAAA-------AATCAAAAATAGCAT-----GCTGCTTCGGCGTGCAAAAACT
s cb4.chrX              8121529 62 + 21540570 aaaattgaggaaaagtTTTATAACACAAAAAAGTATTTATCACAGTGTCGG-ACACAGAAACT
i cb4.chrX              I 153 I 115
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=0.000000
s ce10.chrX             3070879 128 + 17718866 AGCGACTAAAGCTAAAAATGAGTTTCAGCCCGAATGATGTTTCAGCTTTCTGACTAAAAGATGATGAGGTCTAATAGGTACATTGTGTGTGTTTTAATATTTGATACATCACTGATTTGAAATCAGCA
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8121591 115 + 21540570 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=459.000000
s ce10.chrX             3071007 68 + 17718866 CAATGGAAAACACTATC---TGAAAAGTTC--------------AGTAACAGTGACTACTTTTGATAGTTCATTTTGCA--TTTAGA
s cb4.chrX              8121706 82 + 21540570 CAATAAAACATTCTATCAAGTGACAAGTTTTCGATACCTTTGGAagaaacagagataatt-----gagctcaaagtgcacgtttAGG
i cb4.chrX              I 115 I 97
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=0.000000
s ce10.chrX             3071075 93 + 17718866 TTTTCCTGGCTGTGATCTTAAACTTGCTTCACACGTACAGTTCAGATTAACTGGTAACATCTTTTGGTACTTGTGTAGTATACCTAACACAAA
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8121788 97 + 21540570 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=-1683.000000
s ce10.chrX             3071168 408 + 17718866  
s cb4.chrX              8121885 519 + 21540570  
i cb4.chrX              I 97 C 0
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeSp111.Scaffold629   360797 169 - 33334924 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=-1057.000000
s ce10.chrX             3071576 84 + 17718866 ACTTTGTTTTACATATT-----Gaaatattt--------------taaaaattataaactaatatttatagttgtaaaaaattttCAGACCCTTTATGTTTGC
s cb4.chrX              8122404 84 + 21540570 ----ttgttttcac--------aGAACGTTT----AATTCAgtgattaaaattttaaactagCA---AAATTTGTTCAACATGGTCAATATCTGAATTCTcat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   360966 92 - 33334924 ATTCTGgtttatatttgaaaaagaaacgtttttgaaaactgataacaacaaattaaaattaaca-----------TCTGTACATTTAACGTCTTTTTGTCTgt
i caeSp111.Scaffold629  I 169 C 0
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e caeRem4.Crem_Contig0   258243 125 -  4500979 I

a score=-11905.000000
s ce10.chrX             3071660 60 + 17718866 TTGAAAATTTGTTCAAAAAGTTTTCAATAAAATATCA--TGTTGAAACATCGTTATCATTCT------------------------
s cb4.chrX              8122488 45 + 21540570 ------ctctg-------------------aatttct----------------tattATATCAAGCAAAAACATGTgtactgtttt
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   258368 58 -  4500979 TTAAAACTCTGttgag-------------aaatgttt-----tgaaac-----tatcGTTTCTAAC-AATTCACATCAACTG----
i caeRem4.Crem_Contig0  I 125 C 0
s caeSp111.Scaffold629   361058 64 - 33334924 -ctaatttttgatgaacacatt---aaatgaatattttcatctgaaat---tgtaTCGTAATTA---AAACTAG------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I

a score=-861.000000
s ce10.chrX             3071720 17 + 17718866 GAAAAATATATTTGCAA--
s caeRem4.Crem_Contig0   258426 17 -  4500979 AATAAATATAATACTAG--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   361122 17 - 33334924 CATAAAAAC--TTTCAGGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1414073 587 +  4147112 I
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8122533 29 + 21540570 I

a score=4977.000000
s ce10.chrX             3071737 13 + 17718866 AGTGAACAATGTC
s caeRem4.Crem_Contig0   258445 13 -  4500979 AGTGGACAATGAC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   361139 13 - 33334924 AGTGGACAATAGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1414660 13 +  4147112 AGTGGACAATAAA
i caePb3.Scfld02_0      I 587 C 0
e caeJap4.Scaffold17545   57650 337 +   227596 I
e cb4.chrX              8122533 29 + 21540570 I

a score=-6969.000000
s ce10.chrX             3071750 35 + 17718866 AACAATCGTTATATTTTTCACAACCGATTC-------------ATGAA
s cb4.chrX              8122562 46 + 21540570 ACCAAT--TGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAAt
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   258458 33 -  4500979 AAcaat-atgatatttttgacGACGTCTC--------------ACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   361152 19 - 33334924 AAGG--------------TATTACCTCT---------------GGAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1414673 32 +  4147112 AATAAA-GCGATAATTTTCACTACCACT---------------GAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   57650 337 +   227596 I

a score=38998.000000
s ce10.chrX             3071785  94 + 17718866 CAACGCGA----ATC-------TATTGTT------------TGTTATCAACGTCTAACAACTTACTAATACTTAATTTCCTGC-CGTATTA-CCTCTCTAGTTTTCCGGCTGTTTATGT
s cb4.chrX              8122608 114 + 21540570 aaatataatattttcagaaagttattGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGA-TACCT----TTTTCCTGATTTCCTGTTGTTTTCGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   258491  98 -  4500979 CGACGGAGGCAGTTC-------TTTTGTT------------TGTTATCAACCTCTAACAAATCACTAATACCTCATTTCCTGC-AACATTA-CTTTTCCTGGTTTCCGGTTGTTTTCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   361171  98 - 33334924 TAACACGGTCA-TTG-------TCTTGTT-----------TTGTTATCAACACCTAACCATTCACTAATACCTAATTTCCTGT-AATATTA-TTATTCCCGACGTCCGGTTGTTTTCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1414705  90 +  4147112 AGAC----------G-------TCTTGTT-----------TTGCCATCAACTTCTAACAATTCACTAATACCTAATTTCCTGC-GTTATTACTTCTCCCCGTCTTCCGGTTGTTTTTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   57987  97 +   227596 caatgcgATGACAAC-------CATTGTT-------------GTTATC-ACCACTAACCACTTACTAATACCTAATTTCCTGCAAATATTA-CTTTTCTCACTTTCCGGTTGTTTACGT
i caeJap4.Scaffold17545 I 337 I 41

a score=-6500.000000
s ce10.chrX             3071879 52 + 17718866 TTGGCGGCCACCTCCGTAAAACGTTAACTTAAACGTACAAATCTAATTTTAT
s cb4.chrX              8122722 33 + 21540570 TTAGTATCA---TCAATACGACCAAATTTTAAttg-t---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   258589 29 -  4500979 TTGGTACTA--------GACACCGCATTTTAATTGAG---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   361269 26 - 33334924 TTAGTAGC-------------CGGCATTTAAATTGTG-------------AC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1414795 24 +  4147112 TCAGTAGC-------------CAGCAGTTTAATGGTG---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   58084 41 +   227596 I

a score=36592.000000
s ce10.chrX             3071931 128 + 17718866 GCTGTCCCATC------------GTTTTCCCTCTTTCC--------CACTAACTAATAAGCAATATTTCCGGTCACAAACGGTC-----G--ATGAGCAACAATAATATCTGCATTC--T---CTTTGACGGACAGCTGT----AGGCC--CATTACCGGGGTTTT
s cb4.chrX              8122755 130 + 21540570 -----ctcttc--------------tctttctctcttctttagTAGCCGT---------GCGATATTTCCGGTCACAAACGGTTGATGAG--ATGAGCAACAATAATATCTGTTTTC--CACAAATGGGCCGACAGATGC----CGGCGGCCATTACTCGCGTGTT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   258618 120 -  4500979 -----CCCATC--------------TTTGTCTTGCCTCCGT-----CCGT-TCTAAGCAACGATATTTCCGGTCACAAACGTTC-----G--ATGAGCAACAATAATATCTTTAT--------AGGAGACAGGCAGATGT----AGACA--CATTACTACcctttt
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   361295 128 - 33334924 TCTCCTCCGTC------------AGCCTACGTGTCTAC--------CCGT----ATTCGGCAATATTTCCGGTAACAAACGGTC-----GAAGAGAGCAACAATAATATCTGGTCTGTTC---CAAAAGCGGACAGATGA----AGGCA--CATTACTCGGGTTTt
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1414819 118 +  4147112 -----CCCATC------------ATTTTATTTGTCTTC--------ATGT----AATCAGCAATATTTCCGGTCACAAACGGTC-----G--GAGAGCAACAATAATATCTGGTCTG--C---CATAAACGGACAGATGT----AGACA--CATTACT-GGGTTTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545   58125 139 +   227596 ACTATTACATCAATTATAACTTTACTTCAGCTTCATAC--------CAAT-----CTCAGCCACACTTCCGGACACAAACGGTC-----A--ATGAgcacgaaaaaattgttttctc--t---aGCTAACGACCAGATGTGAACAAACA--CATTAAAGGGGTTTT
i caeJap4.Scaffold17545 I 41 C 0

a score=5557.000000
s ce10.chrX             3072059 30 + 17718866 ATGAGGAAAAGAGGAACCGCTATATGGTGA--
s caeRem4.Crem_Contig0   258739 28 -  4500979 at-atgaaaa-aggAACCGCAAAACAGTGA--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   361424 29 - 33334924 atgaaggaaa-agagacCGCTCTACTGGGA--
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1414938 29 +  4147112 ATGAGGAAAA-GGAGACCGCTCATCAGAGA--
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545   58264 30 +   227596 GT-ATTAAAA-AGGAGCCGCTAGATAGTTGGT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8122885 25 + 21540570 I

a score=34424.000000
s ce10.chrX             3072089 150 + 17718866 ACTGTTATTAAGGGTACCG-AACACAGTCATCTGGAAAATTTACTAATCG--AATACACTACGGGTTTTCATTTT---TGTGTTGGA---A-TGACTAATGGGTCAAA------------------------------------------AAAAAT-TATC------AAAAATG-------------TAAACTACAGAGCTTTTTTTCAATTCTAA--------------AAAAAT------
s cb4.chrX              8122910 111 + 21540570 ACTGTTATTAGCGCTACCG-AACACACTCATCTGGAAAATGCACTAATCGAAAAAA------GGCACTGCATTTC---AAAGCATGA---A-TGACTAATG-------------------------------------------------AGAGAC----------------------------------AC--------------ACCGTTATGG--------------ACAAGT------
i cb4.chrX              I 25 I 111
s caeRem4.Crem_Contig0   258767 131 -  4500979 ACTGTTATTAGTGCTACCG-AACACACTCATCTGGAAAATGCACTAATCG--AATG------GGCACTGCATTTC---AGGGAATGA---A-TGACTAATGACTCTATT-----------------------------------------AAAGGCCGGTC------AACAAT--------------CAAAT--------------ACCGTTATGA--------------CCAGAC------
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold629   361453 130 - 33334924 ACTGTTATTAGGGCTACCG-AAAACAGTCATCTGGAAAATGCACTAATCG--ACAG------GGCACTGCATTTC---AGGGCATGA---A-TGACTAATGAGTCCTAT-----------------------------------------TAGGAA-GGTC------AAAAGT--------------TGAAA--------------TCTGTTATGC--------------ACAAGT------
i caeSp111.Scaffold629  C 0 I 32
s caePb3.Scfld02_0      1414967 146 +  4147112 ACTGTTATTAAGGATACCG-AAAACAGTCATCTGGAAAATGCACTAATCG--AATA------CGCACTGCATTTC---AGGGCATGA---ATTGACTAATGATTCTTTT-----------------------------------------CGGACC-GGTC------AAAACTG-------------GGGGA--------------ACCGTTATGAAGCtataaaaacggaaaaga------
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17545   58294 197 +   227596 ACTGTTATTAAGCGTACAGAAACGCTCTCACCTGGAAAATTCACTAATAG--AATG-------------CATTTCATGAGGCCATGACTGA-CGACTAATTATTTGGATGGTCCTTCCTTTCGTTGGTCGGCTATCTTTGACcgcacacaaaaaaa-agtcatccaaaaaaaCGAGGGGACGTGTATTCGAT--------------TCCGTTACAT--------------TTACTTTCTCAT
i caeJap4.Scaffold17545 C 0 C 0

a score=2293.000000
s ce10.chrX             3072239 11 + 17718866 GTATTGTAACA
s caeRem4.Crem_Contig0   258915 11 -  4500979 GTAGTAAAGCA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold629   361615 11 - 33334924 GAACCGCAGCA
i caeSp111.Scaffold629  I 32 C 0
s caePb3.Scfld02_0      1415150 10 +  4147112 -TCCTACAACA
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17545   58491 11 +   227596 TCAATGCAACA
i caeJap4.Scaffold17545 C 0 I 92
e cb4.chrX              8123021 111 + 21540570 I

a score=-6194.000000
s ce10.chrX             3072250 64 + 17718866 A---CAACTCAAGATAAGAGTGAGTTCCAGTAGTAAAATCA-----------TCAATTGAACATGTTCCTGAATTTTG
s caeRem4.Crem_Contig0   258926 65 -  4500979 A---CAGTGCCAATTA--ATCGGGTCATGATCACaaagttctgttttttttttcaactaaatttg-TACAG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   361626 46 - 33334924 AGTACTTTTTTAGGT-----------------GAGAAA--------------ACACCCTAATATG-TACAGTACTTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1415160 59 +  4147112 AGTTCTTTTCAAACTA----CAGAGGAACACCAAAAAG--------------TCACCCTAATATG-TACAGTACTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   58502 92 +   227596 I
e cb4.chrX              8123021 111 + 21540570 I

a score=91.000000
s ce10.chrX             3072314 1 + 17718866 A
s caeJap4.Scaffold17545   58594 1 +   227596 a
i caeJap4.Scaffold17545 I 92 C 0
e caePb3.Scfld02_0      1415219 0 +  4147112 C
e cb4.chrX              8123021 111 + 21540570 I
e caeSp111.Scaffold629   361672 0 - 33334924 C
e caeRem4.Crem_Contig0   258991 0 -  4500979 C

a score=180643.000000
s ce10.chrX             3072315 237 + 17718866 ---CTTCATGTCGGAAGACTT-----TTAAATTGAAGTGCGCGAAATTGGTAGGAGTCTGCGCTTGTTTGC-------CGCC----CGCTCACCAAAATACAAGGACAACCCATATA-CC----GGGAGGAATTTGTCGCC-TCGCCCGGATATTCGACAGACGTGACAAACGACTGCTTTT-CAAACTGCCAATTTCGATGTCACACCTGC-AGTTTTATAATTCCTTCGG------GTGGTCTCTAATCTTGTGCAGCGCCT-AATAAG
s cb4.chrX              8123132 237 + 21540570 ---CTTTTTGTcggaagattt-----ttaaattgaagtGCGCGAAATTGGTGGAATT---GTTCCATTCACCATCCG-CGCC--ACCGC-CAACAAAACACAAGGACAA---------CCAAGAGAGAAGGAATT--------TGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTATGAACCCGCCAATTTTGATGTCACACCTGC-AGTTTTATACTTTCTTCGGTTTGTCGTGGTCTCTAATCTTGCGGGGAGGCC-AATAAG
i cb4.chrX              I 111 C 0
s caeRem4.Crem_Contig0   258991 246 -  4500979 ---TACCTTGTCGGAAGA-CT-----TTAAATTGAAGTGCGCGAAATTGGTGGAATT---CGATTGTTCACTAGTCGCCGCCATACCGCTCAACAAAATACAAGGACAACACTGACACCCAAACGAGAGGAATTTGTCG----TGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTA-GAAACCGCCAATTTCGATGTCACACCTGC-AGTTTTATACTTTCTTCAG------GTAGTCTCTAATCTTGTGCAGCGCCC-AATAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   361672 237 - 33334924 ---TCCAGTGTCGGAAGA-CT-----TTAAATTGAAGTGCGCGAAATTGGTGGAAAT---TGATTGTTCACTGC----CGCCATACCGCTCAACAAAATACAAGGACAACATCGACA-CCTACCGAGAGGAATT---------TGTCCGGATATTCGGCTGCCGTGACAAACGACTGCTTTA-CAAACCGCCAATTTCGATGTCACACCTGC-AGTTTTATACTTTCTTCGA------ATGGTCTCTAATCTTGTGCAGCGCCCCAATAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1415219 237 +  4147112 ---TTCACTGTCGGAAGA-CT-----TTAAATTGAAGTGCGCGAAATTGGTGGAATT---TGATTGTCCACCGA----CGCCATACCGCTCAACAAAATACAAGGACAACACCGACA-CCTACCGGGAGGAATT---------TGTATGGATATACGGCAGCCGTGACAAACGACTGCTTCA-CAAACCGCCAATTTCGATGTCACACCTGC-AGTTTTATACTTTCTTCAG------GTGGTCTCTAATTTTATGTAGCGCCCTAATAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   58595 235 +   227596 CCTCATTTTGTCGGAAAA-CTGGAGGTTAAATTGAAGTGCGCGAAACTGACGAAATT---TGATTGTTCGGC------CGCC------TCCAACAAAACACAAAGACAACA-------CCGTACCGGAGGAATTTGTCACCGTCGTTCGGACAGTCGGCAGCCGTGACAAACGACTGCTTTACAAAACCGCCAATTGAAATGTCACACCTGCGATTTTTATACTT--TTCGGT-----CTAGTCTCTAATCTT-----GCGCCC-AATAAG
i caeJap4.Scaffold17545 C 0 I 82

a score=-100.000000
s ce10.chrX             3072552 2 + 17718866 AA
s cb4.chrX              8123369 2 + 21540570 gg
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   259237 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 273
s caeSp111.Scaffold629   361909 2 - 33334924 AC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1415456 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   58830 82 +   227596 I

a score=1555.000000
s ce10.chrX             3072554  8 + 17718866 -CATTTTCT-
s cb4.chrX              8123372 10 + 21540570 caatttttct
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   361911  8 - 33334924 -CATTTTTC-
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1415458  8 +  4147112 -CATTTTTT-
i caePb3.Scfld02_0      C 0 I 823
e caeJap4.Scaffold17545   58830 82 +   227596 I
e caeRem4.Crem_Contig0   259239 273 -  4500979 I

a score=-761.000000
s ce10.chrX             3072562 2 + 17718866 TT-
s cb4.chrX              8123382 2 + 21540570 -tt
i cb4.chrX              C 0 I 467
s caeSp111.Scaffold629   361920 2 - 33334924 GT-
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_0      1415466 823 +  4147112 I
e caeJap4.Scaffold17545   58830 82 +   227596 I
e caeRem4.Crem_Contig0   259239 273 -  4500979 I

a score=508.000000
s ce10.chrX             3072564 28 + 17718866 AACAAGA-AATTAAATCGT--TTTGAATGGA
s caeSp111.Scaffold629   361922 31 - 33334924 AAAAAGACAATGGTGTTGgaatttgaatgga
i caeSp111.Scaffold629  C 0 I 209
e caePb3.Scfld02_0      1415466 823 +  4147112 I
e caeJap4.Scaffold17545   58830 82 +   227596 I
e cb4.chrX              8123384 467 + 21540570 I
e caeRem4.Crem_Contig0   259239 273 -  4500979 I

a score=0.000000
s ce10.chrX             3072592 5938 + 17718866  
e caePb3.Scfld02_0      1415466  823 +  4147112 I
e caeJap4.Scaffold17545   58830   82 +   227596 I
e cb4.chrX              8123384  467 + 21540570 I
e caeSp111.Scaffold629   361953  209 - 33334924 I
e caeRem4.Crem_Contig0   259239  273 -  4500979 I

a score=225.000000
s ce10.chrX             3078530 11 + 17718866 ATAAATGCAAA
s cb4.chrX              8123851 11 + 21540570 ACAAAAACAGC
i cb4.chrX              I 467 C 0
e caePb3.Scfld02_0      1415466 823 +  4147112 I
e caeJap4.Scaffold17545   58830 82 +   227596 I
e caeSp111.Scaffold629   361953 209 - 33334924 I
e caeRem4.Crem_Contig0   259239 273 -  4500979 I

a score=-839.000000
s ce10.chrX             3078541 16 + 17718866 GTCATCAATGCAT---AAG
s cb4.chrX              8123862 12 + 21540570 -------GTCACTAAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   259512 16 -  4500979 GTCATCAGTCACT---TTA
i caeRem4.Crem_Contig0  I 273 C 0
e caePb3.Scfld02_0      1415466 823 +  4147112 I
e caeJap4.Scaffold17545   58830 82 +   227596 I
e caeSp111.Scaffold629   361953 209 - 33334924 I

a score=4481.000000
s ce10.chrX             3078557 21 + 17718866 CTTGCGTAACTTCATTAATTG
s cb4.chrX              8123874 21 + 21540570 TAGGCGCAACATATTTAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   259528 21 -  4500979 CCAACGCAACACTTTTTATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1416289 21 +  4147112 CTAACGCAACACTTTTAATGA
i caePb3.Scfld02_0      I 823 C 0
e caeJap4.Scaffold17545   58830 82 +   227596 I
e caeSp111.Scaffold629   361953 209 - 33334924 I

a score=-2201.000000
s ce10.chrX             3078578 27 + 17718866 TCAATTTACCCATCTT-------------------CACTGCTATCG
s cb4.chrX              8123895 46 + 21540570 ACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   259549 35 -  4500979 ACAATTAACTCATATT-----------CTTATACACTTTGCTATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1416310 21 +  4147112 CCGATTAACTCTTTCG-----------TTTAC--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   58912 20 +   227596 TCAATTTACTCATCCT-----------ATTG---------------
i caeJap4.Scaffold17545 I 82 I 8
e caeSp111.Scaffold629   361953 209 - 33334924 I

a score=266529.000000
s ce10.chrX             3078605 432 + 17718866  
s cb4.chrX              8123941 481 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   259584 433 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   362162 427 - 33334924  
i caeSp111.Scaffold629  I 209 C 0
s caePb3.Scfld02_0      1416331 451 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   58940 482 +   227596  
i caeJap4.Scaffold17545 I 8 I 1789

a score=910.000000
s ce10.chrX             3079037 1 + 17718866 T
s cb4.chrX              8124422 1 + 21540570 T
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   260017 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 3679
s caeSp111.Scaffold629   362589 1 - 33334924 t
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1416782 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   59422 1789 +   227596 I

a score=709.000000
s ce10.chrX             3079038 20 + 17718866 CGTTCTTAC-----AGGGACCATTT
s cb4.chrX              8124424 18 + 21540570 ATGACTAAT----GAGGGACCA---
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   362590 25 - 33334924 ctttcttttgacGGAGGGACCTCTT
i caeSp111.Scaffold629  C 0 I 107
s caePb3.Scfld02_0      1416783 21 +  4147112 ctttctatt----AAGGGACCATGT
i caePb3.Scfld02_0      C 0 I 20711
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=0.000000
s ce10.chrX             3079058 2 + 17718866 AA
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124442 0 + 21540570 C
e caeSp111.Scaffold629   362615 107 - 33334924 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=624.000000
s ce10.chrX             3079060 74 + 17718866 TTCGAGGTCAATGTGACAAGT--TGCTTTGCAGTTTGTTAGGAATCACACATCTTGAAATTTTTACAGAAATATCA
s cb4.chrX              8124442 64 + 21540570 ---GAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTAC---------TGCTTTCAGAAATGTCA
i cb4.chrX              C 0 I 5170
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e caeSp111.Scaffold629   362615 107 - 33334924 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=0.000000
s ce10.chrX             3079134 62 + 17718866 TTGTCTGACGTTGAAAAAGTACTTTAAAGTTACAAAATAGAAAATGTATATAATACACATTT
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124506 5170 + 21540570 I
e caeSp111.Scaffold629   362615 107 - 33334924 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=57.000000
s ce10.chrX             3079196 347 + 17718866 CAGGGGTTATTTGATGTTTGAATAAAAAATTATAACTAACAAAAACACTGATAATTTTTGAA-AATGCATTTTTGAATTGAAGCATAACTTACTAGTTAGTAATCTTTTAAAGGTAATTTACTCAAATATATTTTGGA-----GCATATTTTTCTGTAAGAACATTTTCTATTTCTGAAAATACAAATAGCACTAGAATT----AGTATTCACATGGTGACCAAATTAATTAGA------AACATTTTGGGAACCGCTGA-TGTGTCCTTTAGAACAGTGTTTTGCAGTTTTAAGCTATAAGATATTGTTTTTTTATTGTGGCGAAAAACCCTGAGCTGCTCTTTTTATAAACAGCGTTTTTGT
s caeSp111.Scaffold629   362722 285 - 33334924 CAGTGCTGATTTG---------------------------AAACACACcaataaatttcaaacagTATACCT---AATTGAA-----------TAGtacaaaatattt-----ataatttAA-CAATTGTATGTTTGATGAATGAATAATcatctttca----atttcatttttc----aataccATCA--ACTAAAATTACCCACTTCTCGCCTGTTCATCAGAAT-ATTAGatgttttgatatttt--caactGCTGATTGCGTC------AATAGTAGTTTGC------------CAACACAATACCAATTGATTTTCGAGATTGACATCGA-CCGCTCATAATTTGAACTGGGATTTTAT
i caeSp111.Scaffold629  I 107 I 95
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124506 5170 + 21540570 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=0.000000
s ce10.chrX             3079543 97 + 17718866 TTTAATTATTTTGCTTAACATTTAACAGACATGAATTTACTACAAATTTTTgatacttatgggtttcgttccccccaaaatgttttaattttctaCA
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124506 5170 + 21540570 I
e caeSp111.Scaffold629   363007 95 - 33334924 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=-2354.000000
s ce10.chrX             3079640 582 + 17718866  
s caeSp111.Scaffold629   363102 631 - 33334924  
i caeSp111.Scaffold629  I 95 C 0
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124506 5170 + 21540570 I
e caeRem4.Crem_Contig0   260018 3679 -  4500979 I

a score=1894.000000
s ce10.chrX             3080222 93 + 17718866 TTTTCGCCCATCATAGAAGTCCGACGTTATTTGTACATACGTTAGTTGTCAGAAGTCC---------AGTAAAAACAGAACATCGAGCCGAACCCTCG-------GCAG--
s caeRem4.Crem_Contig0   263697 99 -  4500979 TCTTACCCCGACATGTAGGTACAACGTCACTT-----CACTCGACTTTTCAGAGATCC-TGAGCTataatgaaaatagaaagtcA-----AACCCtttcgcattttcaga-
i caeRem4.Crem_Contig0  I 3679 C 0
s caeSp111.Scaffold629   363733 98 - 33334924 TGTTTGGACGACATGTAGGTAAAGCGTCATTG-----TGCACTACC-----AAGATCCATGTACTGGGATAAAAACACAAAGTCA-GCCGAACCCTCT--CATTTTCGGAG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1416804 20711 +  4147112 I
e caeJap4.Scaffold17545   59422 1789 +   227596 I
e cb4.chrX              8124506 5170 + 21540570 I

a score=1000.000000
s ce10.chrX             3080315 1 + 17718866 C
s cb4.chrX              8129676 1 + 21540570 C
i cb4.chrX              I 5170 C 0
s caeRem4.Crem_Contig0   263796 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   363831 1 - 33334924 C
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold17545   61211 1 +   227596 c
i caeJap4.Scaffold17545 I 1789 C 0
e caePb3.Scfld02_0      1416804 20711 +  4147112 I

a score=127802.000000
s ce10.chrX             3080316 325 + 17718866 ATTCAGACAAACTCAATATTTT---ATATTTTAGCTTGTTTT-GGT---TCGAACCAATC--CGTAAATTGGCAA-AAGGTTCC-CTCCTGTTAT-------TCTTTGTGTAAATTA-------GCTTGTTAGAACCGAGAGCTAGACTTCAAGAACTGCAGCGATAAAACTG---------------GGATGCGT--CGTGTGCATATATTTTTTTATTTTTTTCTCGATGCCCAACACATGGGACC--GGAATAATGAGGGCG-TTTTTTCTTTGCTTCCAAA-------TAC-----ACCACTAAACTTTTA------CTTATACTACCAAAGCTTCTTGTTCCAGAAATTTGTTCGTTAGAATTATTGTTTTTTGCTCACCAAG
s cb4.chrX              8129677 339 + 21540570 ATCCAGACAAATCCaatatttt---atgttttt-cttgtttttccgtttttgaacCAATCCTCCTAAATTGACGTGAAGGTTCC-CTTCTCTACTCACCCTATTTTTACGAAAATTACCACCCGGCTACAA-GA------GGCTAGACTTCAAGAACTGCAACTATAAAAC-GGATAGCTGTGTTTGTAGATGTGC--C---------TGCtttttttCGTCTCTCTTCAGTGCCAACACATGGGACC--AGCATAATGAGGACGtttttttCTTCGCCTCTAAA-------TTTCACCCGACACTAAACTTTTG--TATACTTGTACCACACAAACA--------CAGATTTACACCAGTC------ACAGATTTTTGCTCTCTTTC
i cb4.chrX              C 0 I 94
s caeRem4.Crem_Contig0   263797 295 -  4500979 atctaGACAAATCCAATATTTT---ACGTTCTTGCTTGTTTTTGGA---TTGAACCAATC--CCAAAATTGGCAT-AAGGTTCC-TACAtctttttatac-------aaaaaaatta-------gcgAGCT-GA------AGCTAGACTTCAAGAACTGCAACTATAAAAC-A---------------AGATGTGC--C--------ACGCTGTTTTTCTCCCGGCCTC--CTCTAACACATGGGACC--AGTATAATGAGGGCG-TTTTTTCTTTGGTCCTAAA-------TTT-----ACCACTAAACTTCTG--TATGCTTTTACC------ACT--------CAGACTTTTGCTAGTTGAA---ATAGATTTTTGCTCTTTTAC
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold629   363833 293 - 33334924 TTTCAGACAAATCTaatatttt---atgtttttgcTTGTTTT--GG---TTGAACCAATC--CCTAAATTGACAT-AAGGTTCTGCCCgcctatttct----tttttacgaAAATTA-------ACAAGATGGA------TGCTAGACTTCAAGAACTGCAACTATAAAAC-G---------------GGATGTGG--C--------ACgctgttttt--------tcaataccCAACACATGGGACC--AGAATAATGAGGgcg-ttttttcttcgctaCCAAA-------GAC-----ATTACTAAACTTCTGTATATATCTCTATTTCACTGACA-----------ATTGTTGAACATGGGA---ACAGATTTTTGCTCTC----
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1437515 291 +  4147112 ATTCCGACAAATCcaatatttt---atgtttttgcttgtttt-cgG---TTGAGCCAATC--CCTAAATTGACAT-AAGGTTCC-CCCGCcta---------tttttacgaaaatta-------GCAAGATAGA------AGCTAGACTTCAAGAACTGCAACCATAAAAC-G---------------AGATGTGC--C--------ACgatgttttt--------tccagacccaACACATGGGACCGGGGAATAATGAGGgcg-ttttttctttgcttccaAA-------CAC-----CCCACTAAACTTCTG--TATATTCTTACAGCACAGACA-----------ATTTTTGCTTAAGAGAA-TACAGATTTTTGTTCTCT---
i caePb3.Scfld02_0      I 20711 C 0
s caeJap4.Scaffold17545   61212 294 +   227596 atttgaacacatccaatattttttcacatttttgcttgtttt--gg---cTCGACCAATC--CGTAAATTGGCTCTGAGGTTCT----GTGTGGC-------TCTTTGTGAGGTT---------GTAAGCT-GACGATAGAGATAGACTTcaagaactgcagcgataaaAT-G---------------AGATGTGCGAC--------gcgctgttttttt------tcgcgatCCAACATATGGGGCC--GGCAAAATTAGgtcgtttttttcttcgccttcaaaatttttttac-----attaCCAAGTTTCTG--TATACGGCTA--------GGA--------CAAACATTTGG-----------ATAGAtttttgctcttcgag
i caeJap4.Scaffold17545 C 0 C 0

a score=4547.000000
s ce10.chrX             3080641 72 + 17718866 TGTAAA-------AAGTTAGAGAATTGAGCTTTGAGG-CTAATCTTTTCAAGAACTCTTTTGTTTATACTAGTTCCTTGC----------------------------------------
s caeRem4.Crem_Contig0   264103 73 -  4500979 AAAATCCAAGTGAGAATCCAAAGATTG---CTGaaca-ataacattttc---aactcTAATGTTTATACAGAGTTGTTAT----------------------------------------
i caeRem4.Crem_Contig0  I 11 I 19
s caeSp111.Scaffold629   364126 64 - 33334924 --TAAC-------CACTTTAAAGCTTT---TTGAACA-ATAACATTTTC---AACTCTAATGTTTATACTGAGTTGTTAT----------------------------------------
i caeSp111.Scaffold629  C 0 I 19
s caePb3.Scfld02_0      1437806 66 +  4147112 TGTATC-------GACTTTGAAGCTCT---TTGAACA-ATAACATTCTC---AACTCTAATGTTTATATTGAGTTTTTAT----------------------------------------
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17545   61506 95 +   227596 ----------------tttta---ttt---tttaatattttaaactttt---aagcCTAATGTTTATAAGAAGTTGGTGCATCAACACCCCTTGTTCGCCTAGTCTGAAAATAACTCCAC
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8130016 94 + 21540570 I

a score=-19152.000000
s ce10.chrX             3080713 58 + 17718866 ---TCTGGGTGGTTCGTTTTTGTGTCTACCAAAGAGTCCAATTCACATTTT--------------------------GTTTCTAAAC
s cb4.chrX              8130110 64 + 21540570 ------------TCTG-TCTTGTC-CgaccaaaaattctaaattacaTTTCTCACTATGTTTTCG--------ATatgtttctcaa-
i cb4.chrX              I 94 I 3
s caeRem4.Crem_Contig0   264195 52 -  4500979 ---ATATGttcttctgtttttgtctCGACCA------CTAATttgtatttc--------------------------atttttcaac
i caeRem4.Crem_Contig0  I 19 I 146
s caeSp111.Scaffold629   364209 80 - 33334924 ---ATTTGTTCGTTAGTTTTTGAGGTTACCA--GACTGAATGTTC--TTATTTGGTCTGTTTGGTctgaaaagttattttttttgtt
i caeSp111.Scaffold629  I 19 I 26
s caePb3.Scfld02_0      1437892 76 +  4147112 ---ACTCA---GTTTGTTTTTGTCTCGTCTA--GCTTgtaatttccatttttaggcAAGCTTCCTCAGAA---ttagttttctcaat
i caePb3.Scfld02_0      I 20 I 24
s caeJap4.Scaffold17545   61601 54 +   227596 TTTGCTTGGAACTCCAATTGTACGCTAATAA--AATGCAgaattc--tttt--------------------------gtttttt---
i caeJap4.Scaffold17545 C 0 C 0

a score=-20022.000000
s ce10.chrX             3080771  87 + 17718866 AAAGAATGATCGAAAAT---CTTTTCCTAGTCTGTAATATT--T------------------------TT---GAAAAATGGTGCAG---GGCACATCTTATAATACTATTTGCAGCATTAT-
s cb4.chrX              8130177  83 + 21540570 tcctaaTCAGTCAAGCTTCctattttctggaatgtttttaT--A------------------------CTCAAGGAAGGAAAGAGAG-------------TTAACGAAGTTTTgtgattcta-
i cb4.chrX              I 3 I 20
s caeSp111.Scaffold629   364315  88 - 33334924 tttttcataccAAACTT---AGCTTGTAAAACTGCTATACTTGA------------------------Ct---tggatgaaaaaaag--tagatcT--ATATAATGcgatttcttgtttttt-
i caeSp111.Scaffold629  I 26 I 11
s caePb3.Scfld02_0      1437992  88 +  4147112 CCCTACTTTCCCCAGTT---TGTTGGCTGTCTTGTTTTGGT--A------------------------CT---AGAATATATCGGAGTTTGGGACA--TTTTAATGcagttttctggttttt-
i caePb3.Scfld02_0      I 24 I 6
s caeJap4.Scaffold17545   61655 108 +   227596 -----gattgtttggtt---ttctttCCATGTTACTATTTT--ATACCGcccccgcccccacccccTCCC---GAACGATAACAACATTTAGCTAA--ATAGTatataattttattatttgcA
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   264247 146 -  4500979 I

a score=32495.000000
s ce10.chrX             3080858 321 + 17718866 AATC-------------------------ACGTTTGTCTTTTTCTTCTGTGGTTATTTCTGCAAATTTTCAA--CACAATACTTGA---ACAAGACTTG----------TGTTCC-AATGTGTC-------------TTTATTGAAAAAAAAACTTAATGCTCT--TTTAGATACCA-GT---------CTGCTTTTTGATTCTGAT--AGATC---------------------AAAAAAA---AACTC---------TCCCCTCCTCCTTTTTCGG----GCTCCATTCGTCTATAAATCTTGT----C-----CT-GATACTATCG-TTTTTTTTCTAT--------TTTCAACTT---------------TTTTTGCAATCCATCTTCCAGAT------------------ACCA---CAATGATGTTTATTCTGCAACAACTACTTCGGTTTTTTCGGCTCAAAAATTTTGAGGTA
s cb4.chrX              8130280 334 + 21540570 -----------------------------GCgttcccaatttttc------------------------caatttctggtGTTCCA---ACAAA---TA----------TAACcagatttcgtt-------------ttttcttggaGTC------ACCGCACT--TTCAAAGATCGTGCGTTCGTCATTCTTTGTTTGTTTTCcga--cattt---------------------gaaaaaactgaaaccg--------CCGGCT----TGTTTTTGAGGATCCCTTCTGTGTATATAAATCTCTTTTC-C-TTGTCT-GATACTATCT-TTTTTCCGCCGCTCATCGGTTTGCATCTGACGTAGTCCGCTTCGAATTCTCAATCCATCTTCCAGAT------------------ACCACTCGAGTCATGTTTATCCTGCAGCTCCTTTTGCGGTTCCTTCGGCTCAAAAAATGCGAGGTA
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   264393 350 -  4500979 CCACCAAAt--------------------gcgttttcagattttcgccGT---------TGTTAACAAGTGAGCATTGATGTTTCAAAGACAAAGCGCG----------TATCC--ATTTTGTTATCCAttgtgaacttttttcaaattc--a---aatgtaCT--ATCAAAAACCA-GATCGCATCTCTATTTATTCTTGctctga----------------------------gaaaaaa---gaacc---------tcgttt----cttttttga----ctcCACCCTGTCTATaaatcttttctctc-ttttct-gatACCATCTATCTTTTCTCCGC--------TTGTAGCTGACGTACTTCTC----AATTCTCAATCCATCTTCCAGAT------------------ACCA--CAGATGATGTTCATCCTGCAACTGCTTCTCCGATTCCTTCGGCTCAAAAAATGCGAGGTA
i caeRem4.Crem_Contig0  I 146 C 0
s caeSp111.Scaffold629   364414 347 - 33334924 acac-------------------------atgttttttgtttctttttgttgaaaa---tgtgAGTCCGTGAGCATTGATGTTCCCAAGACAAATTACATTAGAAGAATCTGTC--ACTTTTTA----------------TGTCAAAAGTGGA---AATGGACT--ATTTCAAATCA-GA---------TATCTGTCTGATTCCGAA--GATCc-----------------caggaaaaaaa---gagcc---------gCGTTT----GTTTTGTCG----GTTCCTTGTGTCTataaatctcttttttcggcgTTT-GATACCATCTCCCTGCCTTTCGT--------TTGTAACTGACATGCCTCAC----AACTCTCAATCCATCTTCCAGAT------------------ACCA---CCATGATGTTTATCCTGCAGCTGCTTCTACGATTCTTCcgactcaaaaatttcgaggta
i caeSp111.Scaffold629  I 11 C 0
s caePb3.Scfld02_0      1438086 345 +  4147112 CTGc-------------------------gctttttcaatgttctttgTTTTATAACTTTGTAAACCGTTGGACCTTGATgttccaatgaaaaattata----------acgtc--actttttc---------aatctcttttcAATAGAAGA---GAAGAACT---TCTCACATCA-GA---------TATCTGTTTGATTTAGGCTTacttt-----------------tagtaaaaaaa---aaact----------cgttt----gTTTTGGCG----GTCCCTTCTGTCTAtaaatctctttttcc-atGTCT-GATACCATCTATCT-CCTTCCGT--------TTGTAACATACGTAGCTCAG----AGTTCTCAATCCATCTTCCAGAT------------------ACCA---ACATGATGTTTATCCTGCAACTTCTTCTACGATTCTTcaggctcaaaaatttcgaggta
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17545   61763 369 +   227596 ----CACATCCCGGGGCCCCTTCTTCCAGactttttctgttcttttccTAGTCTGAACATGTCAAATC-TGAGCATTGGTGTTTCG-----------------------TTTCC--AATACGTT-------------TGCAACCAAATCA--G---ATTGCCCTTATCCTTgattca-ct----gtttttttttgtctgtttctTAT--ACTCGATTAAAacggaacaaaaaaataaaaaat---aagctGAAAAAGGCTCACtt----ggtttttgt-------tttggtttATATAAATCTTATTGCGC-TTATCCGGGTACCATC----------------------TTACAAC-----------------CCTGCTCAATTCATCTTCCAGATCTACGACGTTCTCCACCCACCA---TCATGATATTTGTTCTTCAACTGCTTCTCCGGTTCTTCAGACTCAAAAACTTTGAGGTA
i caeJap4.Scaffold17545 C 0 I 198

a score=-981.000000
s ce10.chrX             3081179 34 + 17718866 CTTG-TTT----ATTTTTTGTT--TTTTTTTTGTTT-----CGGTG
s cb4.chrX              8130614 34 + 21540570 Cttt-ttttcggcgttcttttt-atttttcagattt----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   264743 17 -  4500979 CTTg-t------------------tttttaagattt----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   364761 40 - 33334924 tttg-ttttcagatttgttttttatttttttggtttcaacg-----
i caeSp111.Scaffold629  C 0 I 301
s caePb3.Scfld02_0      1438431 34 +  4147112 tttgtttttcagatttttcgtt--ttcttttgtttt----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   62132 198 +   227596 I

a score=-25076.000000
s ce10.chrX             3081213 142 + 17718866 TGATTTGATTTTTTAAATTTTTTTA----------------AAGTCAATTCTTGATAAACAAA-------AATTAGA-----------------------------------ATTTTT------GGTGTTCTAAAATGAAGAAGCAATGAT---------CGCAAAGTTCAAAATCAA----CGTAAA---------TCCACATTTCCGG------------TTTTGAGCATTTTTGACT------
s cb4.chrX              8130648 237 + 21540570 ttgactggttttgcatattcatttttcacagacattttgaaggggtgggacatgaaaaaaaggtCAGGTCATATAGAAAAGGGTAAATCCAATAGTCGAGATATTCTATATTATTTGTGTTGGGTCTATTCTGGTGTCAAAATGGGAGGATATCAACGTAGGACGAGTTCCAGGTCGA---CCAAAAAAGCCACtacagaaaattctaaaccaACTGATGAGGTGAGAAGTTTCCT---TTTG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   264760  93 -  4500979 ttagCTTGTTTTTCACACTCTCTTT----------------ATGGTGAAACATGTGAA------------ATGCAGAAAA--------------------------------ACATGT------------------------------------------GGGCAAGT----GTTCAA---GCGGAAA----------------------------------GTCGgaagatttct----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1438465 172 +  4147112 --------tttttc-------tctt----------------gaaatga---ATGTTAAAAATATGACG--TTCGAGAAACGTGGTGCTACGATAGAACGGAAAAAgtaaattactttttcaatgaatcttcttgaatgaaaatataattat---------aaatgaaa----atttgatattcggaaa----------acaaatttt---------------gttcgggttttgttatttttgtcg
i caePb3.Scfld02_0      C 0 I 190
e caeJap4.Scaffold17545   62132 198 +   227596 I
e caeSp111.Scaffold629   364801 301 - 33334924 I

a score=-8526.000000
s ce10.chrX             3081355 172 + 17718866 AAGCTGGCTAAGT---------TTGCAAGTTCATCTAG-----------GGAATCAAACCTTAAAATATGTTTAAAGAGCTCTTCGAGCAACTGATTTGCCTACGGTGACACTAATTTTATATTCCCATTAACATGTGAAGTTGCAAAATTTTTAGATCAGTCAAACAGGCTCAATATGTTGAAAACAaaaa
s cb4.chrX              8130885 174 + 21540570 AGAATGGTT-AGTTCACGGAGACTAGAA----ATTTGGTTTTAGATTTAGtttccaaaactgaaaatgtacGGTAAATGCTCTATGAGAGGACGACCC-TGTACG-------TGAACTTTGACTTAGACTACCTCg-gttatttcagaaaacataaCAAGTTTTGAACTGATTAATTACTT----ATTATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   264853  88 -  4500979 gaaatgttt-agT---------CTGGAA--TGATTTGG----------------------TGAAAGTATACT-------------------------------------------ATTTCTTCTCTCATTATCCTG-GCGGTtcc----------------------ttgttcattttttt----tcgaaaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1438637 190 +  4147112 I
e caeJap4.Scaffold17545   62132 198 +   227596 I
e caeSp111.Scaffold629   364801 301 - 33334924 I

a score=180.000000
s ce10.chrX             3081527 1 + 17718866 t
s cb4.chrX              8131059 1 + 21540570 T
i cb4.chrX              C 0 I 128
s caeRem4.Crem_Contig0   264941 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1438827 1 +  4147112 T
i caePb3.Scfld02_0      I 190 C 0
e caeJap4.Scaffold17545   62132 198 +   227596 I
e caeSp111.Scaffold629   364801 301 - 33334924 I

a score=-4548.000000
s ce10.chrX             3081528 68 + 17718866 -gttaaaaaccacttctatgatgccaaaatggccaaatacaatagtactttccaaactctccaa--aactt--------
s caeRem4.Crem_Contig0   264942 40 -  4500979 tgttACA----------------------------AGGACGGCGGTAAA---CAGGttttcacctgaattt--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1438828 72 +  4147112 -GTTGAagatcattcatttttttcc----tgg-tgAGGAAAGTGATAACTT-CGAGCACTGTAATGAACTCTCAAACTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   62132 198 +   227596 I
e cb4.chrX              8131060 128 + 21540570 I
e caeSp111.Scaffold629   364801 301 - 33334924 I

a score=-50399.000000
s ce10.chrX             3081596 349 + 17718866 ttttgaaatttttttgtttagagccaaaaagtagcaatttttactgaaatt---ttttcaa-----cttctaaatttt-----atat----gaaatttagaaaaac-------------------atttttttgatt----tttttaaactgtaatatttggtcactatggtgcactaggcactttgaaaaaaattttctca-----------AATT--TAATCAAATCAAATCaaaatcgggaattttctgattttggataaat--ttagctcatttcattaaaaacttagagccgccgtaaaa-atctttgacaaattttttgagcGCTCATTTT---------------GTAATTGAGCCTTTCA------CTGAGAAATTAAAAACA---------CTGCAAAAAGTTCT---TAGAATCAATATCTCAGATGG
s cb4.chrX              8131188 364 + 21540570 --------TTGTG-------AATTGTTTAGGTA---AATTTGTCTAGAACTaccttctgaa-----aataaaaattctgagcAACATGTTAGATATGTTGCACAACTGGGCTACGCTGCCAAGAGATCtcaaaaacc----tgtcaattaaaaaatatttttaaaaaaga---------------tgaacaa---tttctcagttgac-----aact--ttttcatatcttgg----aTAGAAAATGTAATGAATTGGATCAAATG-TGAACCccgtctattacaggttt----------tacgacaactaaaaatacttttttca--gctaatttttttaaaatacccGAAGTCACTATCCCTTTTTTCCAGTGTAACAAATCAAGCACATCATTTTTTCCATAGAACCTCCTTTCTAAAAAC-GTATCACTG----
i cb4.chrX              I 128 C 0
s caeRem4.Crem_Contig0   264982 206 -  4500979 -------------------------------------------------ttcttttcttaa-----ttttcatatttt--acaatat-caagatttgttttacttc-------------------atttctataatt----tttaattaccAAGACATTTTGTGAGAGTG---------------TAG---------TCTCA--------------------CCAAAACTCAG---------------CATAAATTCAATT-GATG-TGCGTTCC-------AAACGTAT----------CACCA-AATTAATAtggctttttt--------gtttt-------gacgcgaag------------------aaagaagaaaaccagaaaaa--------------------------taaaaac--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1438900 304 +  4147112 --TCG---TTCTGCTCTTACCAGCGATAAAATAGGTAATTCGCTCATATTTCCATTCTGAACTTTGTTTCAATATCTT-----ATTTTCTATACTGCTCATGTCcct------------------atttttgtgtttccgattcaaattttctgtgattttgCTCGCCT----------------TGA---------TCCCACATGGCTTATGAACTCGTCTTCAGATCA------------------ACTAAATTTGA---GATATTGAGCCCC-------ATAGCTTG----------------ATCTCTTgcttctcttt---------atttt---------tgtgtctttacaatttcttttt--------------cctggAACCTTACTCCGTGTATTGATGTTCCAGTCTAGGAAC-GTATCACTA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   62132 198 +   227596 I
e caeSp111.Scaffold629   364801 301 - 33334924 I

a score=11709.000000
s ce10.chrX             3081945 148 + 17718866 AATTAATATTGCTTAA--GGTTTG--------------AATAACAAAACGCTAAAAGC--TAGAAAAAAA--------------------------AACGAAAATAGCA-------A--TTTTGCCTAGCATA----AAAT----ACTCCCTTTCTTTATTT--------TTGTGTTTTTTACACGGATCCCTG-----CTCGTTG-------GCACCCACCG------------------AGCGCA
s cb4.chrX              8131552 217 + 21540570 AATTAATatgacatttttgtttttcacgcATCTAGAACGcggaaaaaataacagaaaa--ggAGAGACAATAGGAGAAGCTGTTATTTCCG-----CATGAAATTAGGAGACTCATAGGGCCCACCCAGTGCCTGATCGCATTATATTCTTC-CTTTTCGTTTTATTTTGTTGTGCTCTGTACACGAATCCCGGGAAGTCTTCCTGGATATGTATATTC-------------------CGAAA---A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   265188 150 -  4500979 ------------------------------------------------------------cgagagaaaa---gagaagctGTTATTTCTG-----CATGAAATTAGGAGAGTCGTA--GCCCACCGAGCACC----CACA----ATTCTCC-GTTTTTATT--------TTGTGCTCTGTACATGAATCTCGGGGTTTTTCGTGGTAGAGGGGCACTCACCG--CTGAG--------CCAAACCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   365102 198 - 33334924 AATTTATATGACTTTCTTGTTTTG-ACGcatagaaagagaaaagagaaaaataaaaac--gcaaagaaag---GAGTAGTTGTTATTTCTG-----CATGAAATTAGGAGACTCGTA--GCCCACCCAACACC----CAGC----ATTCTCC-------GTT--------TTGTGCTCTGTACACGAATCCGAG----TCTTGTTG--GAGCATCACTCACCG---CAAGCTTTCCTCCA----GCA
i caeSp111.Scaffold629  I 301 C 0
s caePb3.Scfld02_0      1439204 208 +  4147112 AATTAATATGACTTTCTTGTTTTG-Acgcgaagaagaagaaagaagaaaaataaaaacgggagaaaaagg---gagaagcTGTTATTTCTGCATGAAAT-----TAGGAGACTCGTA--GCCCACCCGGCACC----CAAC----ATTCTcccgttttattt--------ttgtgcTCTGTACATGAATCCGGG----TT--------GGGGAGCACTCACCGGCTAGAGCTTCCTCCCAAAACGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   62132 198 +   227596 I

a score=117051.000000
s ce10.chrX             3082093 173 + 17718866 GCGGAGTACTTTAAATGATGTGAGACTGGCAGTTTTGAGGAATCC-------------AGAGA------AGCGGAT--TGGCTCAGCTGGC------CTTGGATACCAGCTCAATTACGTTTTGATGTGTGGTCCT------CTCATCCGGTTT--GCTGATAGCTTTCTAATTTCGGATGTATCG-----TTTCTGCGT--TCTTCATTCATCA
s cb4.chrX              8131769 183 + 21540570 GAGCCGTACTTTAAATGATGTGACAC--------TCTTGGAAAACGAGTgtgaaagaaagaga-----gaatgGAGCCCGGCTCAGCTGGT------CCTGTGTACCAGCTCAATTACGTTTTGATGTGTGGTCCT---CCACACATCCAGTTC--GTTGatagttttctaattttggatGAATC--------CCCGCGTTCTCTACATTCATCA
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   265338 184 -  4500979 GTGGCGTACTTTAAATGATGTGACACTACCAGTTTTCCGGGGACGGAGTGTCGAGT--AGAAG-----GATTGG----CGGCTCAGCTGGT------CCTCAGTACCAGTTCAATTACGTTTTGATGTGTGGTCCT---C--CACATCCAGTTC--GCTGATAGCTTTCTAATTTCGGATGTATCG-----TTACTGCGT--TCTACATTCATCA
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   365300 182 - 33334924 TCGGCGTACTTTAAATGATGTGACACTAGCAGTTCTTTGG----CTGGTGAAGAAG--GGAGA-----GAAGGGAT--TGGCTCAGCTGGT------CTTCAGTACCAGCTCAATTACGTTTTGATGTGTGGTCCC---G--CACACACAATTC--GCTGATAGCTTTCTAATTTCGGATGTATCG-----TTTCTGCGT--TCTACATTCATCA
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0      1439412 190 +  4147112 GTGGCGTACTTTAAATGATGTGACACTACCAGTTTTGTGA----CTAGTGAAGAGG--AGAAAGAGTGGAAGGGAT--TGGCTCAGCTGGT------CTTCAACACCAGCCCAATTACGTTTTGATGTGTGGTCCTCCAC--CACATCCAGTTC--GCTGATAGCTTTCTAATTTAGGATGTATCG-----TTTCTGCGT--TCTGCATTCATCA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17545   62330 170 +   227596 GCAGCGTACTTTAAATGATGTGTCTGAGCCAGTAATGC--------------------TCATA---------------GGGCTCAGCTGGTCTTCAGCTTCAGCTCCAGCTCAATTACGTTTTGATGTGTGGCCCC------CTCATTTGGTTCAAGCTGATAGGTTTCTAATTTCGGACGAATCGTTGCTTTCCCCCGT--TCTA-ATACACT-
i caeJap4.Scaffold17545 I 198 C 0

a score=-1384.000000
s ce10.chrX             3082266 11 + 17718866 TTCGAAAAATG-
s caeRem4.Crem_Contig0   265530 11 -  4500979 ttgaaaatgtg-
i caeRem4.Crem_Contig0  I 8 I 2
s caeSp111.Scaffold629   365490  7 - 33334924 ttca----gtg-
i caeSp111.Scaffold629  I 8 I 2
s caePb3.Scfld02_0      1439610 11 +  4147112 TTCAAGTggtg-
i caePb3.Scfld02_0      I 8 I 2
s caeJap4.Scaffold17545   62500 11 +   227596 -TCCGatggttt
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8131952 25 + 21540570 I

a score=-30150.000000
s ce10.chrX             3082277  74 + 17718866 TGTTTTGTTCTAGTTTT-TCA---------CGTTTTCC-------------------------------------TTAATG-----------------------TTTTTTTTTCATA---GCGTTTAATTGCTCTTTTTGCCTTG------TT
s cb4.chrX              8131977  99 + 21540570 tgctttgtttttgtttt-tcc---------ttcttGCTCATCCGGTGGATCT-----------------------ATACTGTAC------ATCAT------Cgggatttatttttga---aattttttttaattgtatagtttga------gc
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   265543 111 -  4500979 tgttttgtttctgttttcttc---------ttgttttccatcaataagatttttgCATATT----CTAAT--AGGGTACTgta---------------------gaattattctgaaatcagTTCTTGTCTATTTTGTAGTTTGA------TC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   365499  90 - 33334924 tgttttgtttctttctt-cct---------ttct--------------gtttttgaagtCT-----TACTGAAATTTACTG---------ATAAT--------CTACTGCTTCTAGC---ATCTTTTAT--------CAtccttc------tt
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1439623 129 +  4147112 tgttttgtttctctttt-ctt---------tttttt-----------agtttttgtaaaCTGTAACCAATAAGGGTtactggaaagaaaaacaattacaTGTACTACcttctttgga---aaatttcattgattttacgtttttctcggtttt
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545   62511 103 +   227596 tgttttgttttgttttt-ttcggtaTAGATTTCATTCACGTACAATAGATGTT----------------------TTGCTTCTAAAAAGGAAAGC---------TCCCACCTCTAGT--------TTcctatttttccatttt----------
i caeJap4.Scaffold17545 C 0 I 57

a score=-13430.000000
s ce10.chrX             3082351 20 + 17718866 GCAA-------------------------AGC--------ATCGTAAAATTAA------------------------------
s cb4.chrX              8132076 51 + 21540570 tca----------------------attaatt--------ggaaataacaaaa--aataccaaatGATCCCTTTCCTCAATta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   265654 55 -  4500979 TCAC--------------------TATTCACT--------AGTGAGAAAAACAGCAATACTGACCTAGCCAATTTACCAATta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   365589 73 - 33334924 ccaa------aaaaaatgtagt--tCTTTATTAATcgatcattgaaaaacaaa--actggTGTCCTATCCTTCTCGCCAATTa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1439752 78 +  4147112 ctgATGGTTTGAACGCTGCAATAATATCCAAGACTCG---AATAAAAAACGCA--ATGGGTGACCTATCCTATTTCCTAATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   62614 57 +   227596 I

a score=258765.000000
s ce10.chrX             3082371 578 + 17718866  
s cb4.chrX              8132127 668 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   265709 660 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   365662 599 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1439830 636 +  4147112  
i caePb3.Scfld02_0      C 0 I 70
s caeJap4.Scaffold17545   62671 596 +   227596  
i caeJap4.Scaffold17545 I 57 C 0

a score=910.000000
s ce10.chrX             3082949 1 + 17718866 A
s cb4.chrX              8132795 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   266369 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629   366261 1 - 33334924 a
i caeSp111.Scaffold629  C 0 I 56
s caeJap4.Scaffold17545   63267 1 +   227596 a
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1440466 70 +  4147112 I

a score=-951.000000
s ce10.chrX             3082950 1 + 17718866 -T
s cb4.chrX              8132796 1 + 21540570 -C
i cb4.chrX              C 0 I 34
s caeJap4.Scaffold17545   63268 1 +   227596 a-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e caeSp111.Scaffold629   366262 56 - 33334924 I
e caeRem4.Crem_Contig0   266370 29 -  4500979 I

a score=392.000000
s ce10.chrX             3082951 8 + 17718866 AAAAATAA
s caeJap4.Scaffold17545   63269 8 +   227596 aataaTAG
i caeJap4.Scaffold17545 C 0 I 42
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e cb4.chrX              8132797 34 + 21540570 I
e caeSp111.Scaffold629   366262 56 - 33334924 I
e caeRem4.Crem_Contig0   266370 29 -  4500979 I

a score=0.000000
s ce10.chrX             3082959 59 + 17718866 ATGTTCACAAAACACGAAGATCTTTGGAACAGTATTGCTGTAACTACAACTATGAAGAC
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e caeJap4.Scaffold17545   63277 42 +   227596 I
e cb4.chrX              8132797 34 + 21540570 I
e caeSp111.Scaffold629   366262 56 - 33334924 I
e caeRem4.Crem_Contig0   266370 29 -  4500979 I

a score=-1472.000000
s ce10.chrX             3083018 331 + 17718866 ATTAACTGAGCGCTTTAGAATTTTTCATGTTGAAAGTCCATAAGTGGAATTTTGAACAAATTTATCA-----------AAAAAAGTTATGACGGTTCAAATTAAACCA----------------------------------AGAACATTTTTAAAAACAGAGTATGGTCAGTGTG------TCAAAATTTCGAGGAATGTGGACTTTTTGAGTAATTTTAAACATAGCTGCATGTTTGAACGGCAAAAATGTTTGAATAAAAACAAATTGAACGAAAATAAAGTATTAAACTCCTAGAAAATCTTTCTTTAAACTTCCAAAATTATGATATGTCTGAGGTTTGACAACTTTCTGGCTGCCAAACGAAACATTTAGAAAAAT
s caeJap4.Scaffold17545   63319 296 +   227596 agcaaacgcgcccactggattttttcgcgc-gaaattc--------aaattttga-cgcattttttatgtttttcgggaaaaaaagcataaattcttaatttttcccacatgtgctccaacggaattatagctgaggtctttagagc-tttttaaagcctaagaacgtcgaatttggttcagccaccatttcgaaa----taatcgttttgagttttttgg------------tgtttttgcaggataaatcttt-----------------acgaaaatcgaagtttgggc--------aat-----tttatggtattaaaaatacgatacat---acattttacaa--------------------------agaaaaac
i caeJap4.Scaffold17545 I 42 I 166
e caePb3.Scfld02_0      1440466  70 +  4147112 I
e cb4.chrX              8132797  34 + 21540570 I
e caeSp111.Scaffold629   366262  56 - 33334924 I
e caeRem4.Crem_Contig0   266370  29 -  4500979 I

a score=0.000000
s ce10.chrX             3083349 186 + 17718866 TTTTAACTTTTTAGTTTAGTGTTTGAATATTTCAGCGCTAGAAGAGCAATTTAAGTCGTTTTTCTACTGGAGATTTTCACCTTAAAGTGCTCGTTTTCTAACAATATGCAATAATACTTTTTTTGTTAATTGGTTTGATGAGAATTCCAAAAAAAAAAAGTTTTTTGTCCAATGTTAAAGCACGAA
e caePb3.Scfld02_0      1440466  70 +  4147112 I
e caeJap4.Scaffold17545   63615 166 +   227596 I
e cb4.chrX              8132797  34 + 21540570 I
e caeSp111.Scaffold629   366262  56 - 33334924 I
e caeRem4.Crem_Contig0   266370  29 -  4500979 I

a score=227.000000
s ce10.chrX             3083535 7 + 17718866 AAAGTTA
s cb4.chrX              8132831 7 + 21540570 aaattga
i cb4.chrX              I 34 C 0
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e caeJap4.Scaffold17545   63615 166 +   227596 I
e caeSp111.Scaffold629   366262 56 - 33334924 I
e caeRem4.Crem_Contig0   266370 29 -  4500979 I

a score=937.000000
s ce10.chrX             3083542 5 + 17718866 AAAAA
s cb4.chrX              8132838 5 + 21540570 aaaaa
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17545   63781 5 +   227596 ATAaa
i caeJap4.Scaffold17545 I 166 C 0
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e caeSp111.Scaffold629   366262 56 - 33334924 I
e caeRem4.Crem_Contig0   266370 29 -  4500979 I

a score=-1107.000000
s ce10.chrX             3083547 1 + 17718866 -A
s cb4.chrX              8132843 1 + 21540570 -a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   266399 1 -  4500979 -A
i caeRem4.Crem_Contig0  I 29 C 0
s caeJap4.Scaffold17545   63786 1 +   227596 c-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1440466 70 +  4147112 I
e caeSp111.Scaffold629   366262 56 - 33334924 I

a score=214913.000000
s ce10.chrX             3083548 260 + 17718866 ----------------TTTCAGAGACGAAAGAAGCGAATGGAATTTTGTAACTGCAACGTTATATGGTTTTGGCATTGTCACAACATTAGGTACA--------TCATGATTTA----------TATACTTGCACCCATTTGGT--------TTTAAGGGTACAACAGAATTGCGCCAATAACTTATACGGGAAGAATGTTTTGTATCGTTTATGGCATTTGTGGTATACCAGTTACAATGATCATCATTGCAAATGTTGGCCAGTACCTGAACAATTTTGCAGGAGATTCGAGACGCAAGGT
s cb4.chrX              8132844 265 + 21540570 ----------------tttcagagacgAACGAAGCGAATGGAATTTTGTCACCGCCACCTTGTATGGTTTCGGTATTGTGACAACTTTAGGTAAc-----tcaatatttaaaa----------aaagcttCCACAAGATCTCT------TACTACAGGGTATAACAGAATTGCACCGATAACCTATACGGGACGAATGTTTTGCATTGTATACGGTATTTGCGGAATACCAGTGACAATGATCATAATTGCTAATGTGGGCCAGTACCTGAACAATTTCGCTGGAGACTCTAGACGGAAGGT
i cb4.chrX              C 0 I 481
s caeRem4.Crem_Contig0   266400 270 -  4500979 ----------------TTTCAGGGACGAAAGGAGCGAATGGAACTTTGTAACCGCTACATTGTATGGCTTTGGTATTGTGACAACACTAGGTAAC------CGACATCATAAG----------TCATCTATCTATAAATCATTACACACTTTTTTAGGGTATAACAGAATCGCACCAATAACCTATACGGGAAGAATGTTTTGCATTGTATACGGTATATGTGGAATACCAGTGACTATGATTATCATCGCCAACGTTGGTCAATACCTGAATAATTTTGCTGGAGATTCAAGACGAAAGGT
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold629   366318 263 - 33334924 ----------------TTACAGAGACGAACGGAGTGAATGGAATTTTGTAACCGCTACGCTATATGGTTTTGGAATTGTGACCACTTTAGGTATA--------ACGTACTACATTTTCCAGTAAAAACTGTCAGA---------------CTTGTAGGGTATAACAGAATAGCACCAATAACTTATACGGGAAGAATGTTTTGTATTGTATATGGTATTTGTGGAATACCAGTTACTATGATTATCATTGCAAATGTTGGTCAGTATCTTAACAATTTCGCTGGAGATTCACGGCGGAAGGT
i caeSp111.Scaffold629  I 56 C 0
s caePb3.Scfld02_0      1440536 266 +  4147112 ----------------TTACAGAGATGAACGGAGTGAATGGAATTTTGTGACTGCTACACTGTATGGTTTTGGAATTGTGACAACTTTAGGTACA-----TTTACATAGGATTtgt-------gaaactttcaaa--atcctC------TATTATAGGGTATAATAGAATAGCACCAATAACCTATACGGGAAGAATGTTTTGTATTGTATACGGTATTTGTGGAATACCAGTTACCATGATCATCATTGCAAATGTTGGTCAATACCTCAACAATTTTGCTGGAGATTCAAGGCGAAAGGT
i caePb3.Scfld02_0      I 70 C 0
s caeJap4.Scaffold17545   63787 283 +   227596 tttcaactttttttatttcaaggGATGAAAGGAGTGAATGGAATTTCGTCACTGCCACGTTGTATGGTTTTGGAATTGTGACAACTTTAGGTTTACTTGACCGTTATTTTATA---------------TGCCACcgtattttt----cttcttgtAGGGTACAACCGAATCGCACCAATAACATATACGGGAAGAATGTTCTGCATTGTCTATGGTATTTGTGGAATACCAGTAACAATGATCATCATTGCGAATGTTGGTCAATACTTGAATAATTTTGCAGGAGATTCAAGGAGAAAAGT
i caeJap4.Scaffold17545 C 0 I 29

a score=281.000000
s ce10.chrX             3083808 2 + 17718866 CA
s caeSp111.Scaffold629   366581 2 - 33334924 AA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1440802 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold17545   64099 2 +   227596 ca
i caeJap4.Scaffold17545 I 29 C 0
e cb4.chrX              8133109 481 + 21540570 I
e caeRem4.Crem_Contig0   266670 37 -  4500979 I

a score=-973.000000
s ce10.chrX             3083810 4 + 17718866 C-----TTG
s caeSp111.Scaffold629   366583 9 - 33334924 CAACAACGG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   64101 4 +   227596 -----cctg
i caeJap4.Scaffold17545 C 0 I 111
e caePb3.Scfld02_0      1440804 35 +  4147112 I
e cb4.chrX              8133109 481 + 21540570 I
e caeRem4.Crem_Contig0   266670 37 -  4500979 I

a score=575.000000
s ce10.chrX             3083814 3 + 17718866 ttt
s caeSp111.Scaffold629   366592 3 - 33334924 TTC
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   64216 3 +   227596 ttt
i caeJap4.Scaffold17545 I 111 C 0
e caePb3.Scfld02_0      1440804 35 +  4147112 I
e cb4.chrX              8133109 481 + 21540570 I
e caeRem4.Crem_Contig0   266670 37 -  4500979 I

a score=-8847.000000
s ce10.chrX             3083817  27 + 17718866 ---------tttaatttttttttaaattCCAAGTTC---------------------------------------------------------------------
s cb4.chrX              8133590  19 + 21540570 ---------tttaagtttttttcagatt-----------------------------------------------------------------------------
i cb4.chrX              I 481 C 0
s caeSp111.Scaffold629   366595  21 - 33334924 -----------TGTATCCTCGTTGAACtatga-------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   64219 105 +   227596 tttaacttgttcacatttttcatgggttacggtcacactcatctcaactgtgtcaaaaaatgcgcatcGAGATATTTcttgggaaaattggctattttcaaagtt
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1440804  35 +  4147112 I
e caeRem4.Crem_Contig0   266670  37 -  4500979 I

a score=29.000000
s ce10.chrX             3083844 1 + 17718866 T
s caePb3.Scfld02_0      1440839 1 +  4147112 C
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold17545   64324 1 +   227596 t
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8133609 0 + 21540570 C
e caeSp111.Scaffold629   366616 0 - 33334924 C
e caeRem4.Crem_Contig0   266670 37 -  4500979 I

a score=908982.000000
s ce10.chrX             3083845 1327 + 17718866  
s cb4.chrX              8133609 1399 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   266707 1358 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold629   366616 1341 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1440840 1383 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   64325 1611 +   227596  
i caeJap4.Scaffold17545 C 0 I 28

a score=-13261.000000
s ce10.chrX             3085172 31 + 17718866 TC------AGATTGA--------TGGACTTCAATGACAAA----------ACCAA-
s cb4.chrX              8135008 33 + 21540570 TT------TTATTgg----------------aacaaacaaaaaacatataaattt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   268065 30 -  4500979 AA------TGGCT------------------AATAATTGAACTTCTGAT-AATAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   367957 40 - 33334924 tt------tgtttgtgtACTGACCAAACTTCAATGATCAA----------AATGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1442223 35 +  4147112 tcaaaagatatttTT--------CGATGTTTAATGA--GA----------ATTGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   65936 28 +   227596 I

a score=98029.000000
s ce10.chrX             3085203 121 + 17718866 TTAAGGCACGGTCCGAGAAGGAAGTCAGTTTTGAACTTATCAAACTGTTCACCGGAACGAAGTGTTTCCCCATCTCCGATCAGGCATTCTTTAACTGGGGAGGGCCACAGAAGAGATTCGT
s cb4.chrX              8135041 121 + 21540570 tccagacatGGCCCCAGGAGAAAATCGGTATTGAATCTTGCCACTTGTTCTCCAGAGCGCAGTGTATCACCATCCCCTATTAGACATTCCTTGACAGGAGAGGATAATAGGAGGAATTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   268095 121 -  4500979 CTCAGGCATGGTCCAAGGAGGAAATCAGTATTAAACCTATCAAGTTGTTCTCCCGAACGAAGTGTCTCTCCGTCGCCTATCAGACATTCACTGACTGGAGAAGACAATAGGAGGAATTCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   367997 121 - 33334924 TTCAGGCATGGTCCAAGAAGGAAGtcagttttgaatttgacAAGTTGTTCCCCCGAAAGAAGTGTATCGCCTTCTCCTATTCGACATTCTTTGACTGGAGAGGATAATAGGAGAAACTCTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1442258 118 +  4147112 ---AGGCATGGTCCAAGGAGGAAGTCGGTACTGAATTTGTCAAGTTGCTCTCCAGAACGCAGTGTATCTCCCTCGCCTATCCGGCATTCGTTGACTGGAGAAGACAATAGGAGGAACTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   65964 121 +   227596 TTCAGGCATGGATCCCGAAGGAAATCGGTGCTCAATTTAGCGAGCTGCTCTCCGGAAAGAAGTACATCTCCATCACCCATTCGTCATTCGATAACAGGAGACGATAATCGCAGGAATTCAT
i caeJap4.Scaffold17545 I 28 I 807

a score=306.000000
s ce10.chrX             3085324 3 + 17718866 AGT
s cb4.chrX              8135162 3 + 21540570 AAT
i cb4.chrX              C 0 I 1419
s caeRem4.Crem_Contig0   268216 3 -  4500979 AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   368118 3 - 33334924 GAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1442376 3 +  4147112 Gat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   66085 807 +   227596 I

a score=-756.000000
s ce10.chrX             3085327 3 + 17718866 CCT-
s caeRem4.Crem_Contig0   268219 3 -  4500979 TCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   368121 3 - 33334924 -CTT
i caeSp111.Scaffold629  C 0 I 21
s caePb3.Scfld02_0      1442379 3 +  4147112 -ctc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   66085 807 +   227596 I
e cb4.chrX              8135165 1419 + 21540570 I

a score=183.000000
s ce10.chrX             3085330 19 + 17718866 GCGAAGAGTTTTACAAATT-
s caeRem4.Crem_Contig0   268222 17 -  4500979 GCAAA---AGTTGTAAATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1442382 16 +  4147112 tcaaa---ttttgtaaatt-
i caePb3.Scfld02_0      C 0 I 172
e caeJap4.Scaffold17545   66085 807 +   227596 I
e cb4.chrX              8135165 1419 + 21540570 I
e caeSp111.Scaffold629   368124 21 - 33334924 I

a score=183.000000
s ce10.chrX             3085349 39 + 17718866 GCCGCAGATTTTGTATTTTGTTTA-----AATAAATAAT-------GTATA
s caeRem4.Crem_Contig0   268239 51 -  4500979 GTAATTGATTATATTTTCCTTTCACTCATCATAAATGATTTCATCAGTATA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1442398 172 +  4147112 I
e caeJap4.Scaffold17545   66085 807 +   227596 I
e cb4.chrX              8135165 1419 + 21540570 I
e caeSp111.Scaffold629   368124 21 - 33334924 I

a score=0.000000
s ce10.chrX             3085388 366 + 17718866 CATATTATTACTGCATTTTTACAAATTTTGATTTTCAGACCAATGTGAAAAAACTAGTTGAACATATATTCCGTTGATACACAATTTTGCAAATAGAACAGAAAAAGTTTTATTTCAGAAATTTCGAGTTCCAATTATGAATTTATAATTTTTTTTTGAGGGCATATTTTGAACTACTGCCTAACTGCTGTGGTAATTTTAGCAATTATCAAAGTTGCTGACTGCCGAAAACGCCAATTGTCCAAATGTTTGTAATTCTATAAACTCGTGGAGTTTAGAGCTTCGGATATTTGAATATTTGGGGCAATTCAAGTTTGAATTCTTTCTCAAACTAATAAATGGAATAAAGTTTACTGCGCATGATAC
e caePb3.Scfld02_0      1442398 172 +  4147112 I
e caeJap4.Scaffold17545   66085 807 +   227596 I
e cb4.chrX              8135165 1419 + 21540570 I
e caeSp111.Scaffold629   368124  21 - 33334924 I
e caeRem4.Crem_Contig0   268290   0 -  4500979 C

a score=811.000000
s ce10.chrX             3085754 74 + 17718866 AGTATTAAATATCGATATTTTAGGTAA----AAGCCGACAAAACTACAATTCCAAATAAATATTAGAATAACTGTACT
s caeJap4.Scaffold17545   66892 60 +   227596 agtataaaatAACTAAATTCTAAGTACCTCCAAGTCTGGAAAATTACAGTTTGAAACATA------------------
i caeJap4.Scaffold17545 I 807 C 0
e caePb3.Scfld02_0      1442398 172 +  4147112 I
e cb4.chrX              8135165 1419 + 21540570 I
e caeSp111.Scaffold629   368124 21 - 33334924 I
e caeRem4.Crem_Contig0   268290  0 -  4500979 C

a score=-677.000000
s ce10.chrX             3085828 56 + 17718866 GAATATTTATTCAATTGTCAAACATAAAACTTACTCCCAATCCAATTATTTCAATT--------
s caeSp111.Scaffold629   368145 43 - 33334924 gaaaatttcttcgttttttgaacaataaatc-------------atcatttgaatt--------
i caeSp111.Scaffold629  I 21 C 0
s caeJap4.Scaffold17545   66952 47 +   227596 ----ATTTCTTCA--TGATAATTAATACATTTA-----------AATACTTTATTACCATACAT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1442398 172 +  4147112 I
e cb4.chrX              8135165 1419 + 21540570 I
e caeRem4.Crem_Contig0   268290  0 -  4500979 C

a score=-4584.000000
s ce10.chrX             3085884 33 + 17718866 TTATTACTGGCAGAAATTATTTCAG-------AGATTC--CC
s caeRem4.Crem_Contig0   268290 33 -  4500979 TTATCACCATTATACTTTATTTAGTAC-----AGATTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   368188 40 - 33334924 ttattttgaaaagaatctTGATAATCCCAATAAAATTTGT--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545   66999 33 +   227596 TCATTCATATAGAAAAATATCACCA-------AAATTTGC--
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1442398 172 +  4147112 I
e cb4.chrX              8135165 1419 + 21540570 I

a score=-16938.000000
s ce10.chrX             3085917 51 + 17718866 ATAAATCACAGTAGGt-taaaatataatttt------------------------aaatac----attaaaaCATTAAAC
s caeRem4.Crem_Contig0   268323 46 -  4500979 ----ATCA-AGTTATTATCATACACCATTATTAAA---TA---------------AAATAC-------AGAG----AAAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   368228 66 - 33334924 TTGAACCACAGTGATT---AAAGAGAATGTTTGAA---TACGTTGAAAACGTCTCAATTAT----ACCGAAA----AACC
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1442570 41 +  4147112 ATACTTCACagc-----------atattttttgg---------------------aattat---gaTTTGAG----AAAT
i caePb3.Scfld02_0      I 172 I 8
s caeJap4.Scaffold17545   67032 47 +   227596 -------------ACCAATACATGGAATTATTAAAGTTTG---------------AAAGAGCCCAATCAGCA----AAA-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8135165 1419 + 21540570 I

a score=448090.000000
s ce10.chrX             3085968 1200 + 17718866  
s cb4.chrX              8136584 1233 + 21540570  
i cb4.chrX              I 1419 C 0
s caeRem4.Crem_Contig0   268372 1025 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   368301 1017 - 33334924  
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1442619 1119 +  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17545   67079 1097 +   227596  
i caeJap4.Scaffold17545 C 0 I 872

a score=-11600.000000
s ce10.chrX             3087168 40 + 17718866 AAACA-AGAA------AATTGTTCTAAATTTGAAAAAAAATGTATAT
s cb4.chrX              8137817 38 + 21540570 AAA-ATATAT------TGAACTCTtccaatcaaaatttcaaaagg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   269397 35 -  4500979 GAA-A-GTAT------AAAA--TTTATAAGTTATAATTCATTGAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   369318 35 - 33334924 GAA-A-ACAT------GATGGATCCATGATCGAAAAT--ATTGAT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1443738 34 +  4147112 GAA-A-ATACTGCTTATAAGGTTAGTCGGTTGGAAG-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   68176 872 +   227596 I

a score=84034.000000
s ce10.chrX             3087208 244 + 17718866 AAATGCTCACATTTGCGCCCCACCAAAGTCAACTTTCCGTCTTGAACGAACGAATAGTGATATTCGCATAGCTCTCCGTTGTTTCCAAAACCTTCAGCAATTTTCTCAGACATGATC---AACTGAAAACATACATTTTAAATCAAAAAGAATTAG-----TACAAACATCTGAATATAAC---------AAA-AACGGAAGAAAGTTTATAAACGCG-GCAGGTGAAGTCGGAA-ACCAGGAAGTAAAAAGAGAAAAAGGAAG
s cb4.chrX              8137855 219 + 21540570 -cTTGCTTACATTGTCGGCCCACCAAGGTGAGCTTTCCATCTTGAAAGAAAGCGTAGTGATGGTCGCACAGTTCACCAAGACTTCCGAATCCGTCGGCAATTTTCTTGGACATTATTGAACACTG------AA------GTGATGGAGAAAGTTAG-----TGCAAAT-------TGAAAA-------------CGCAATACAAGGTTTATAAACAAA-CCCGG------CAGGCGACCAGGAAGTAACGAATAAGTGAAGAAG
i cb4.chrX              C 0 I 579
s caeRem4.Crem_Contig0   269432 247 -  4500979 -ActatatacatttttttccaacCAAAGTGAGTTTTCCGTCTTGAACGAACGAGTAGTGGTATTCACAAAGCTCGCCGAGGCTTCCGAATCCGTCAGCAATTTTCTCAGACATcgtt---cactgaaaaaaaa------gtaagtgAAAAAGTTAG-----TGCAAACATTAGAATAAAAGGTAATCTACGAC-CACAATGAATGGTTTATATACAAA-CACGATGCATTCGGGAGACGAGGAAGTGAAatgcaaaaagagaag
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold629   369353 232 - 33334924 -AACCCTTACACTTTTGTCCAAccaaagtgagttttccgTCTTGGACGAAGGTGTAATGATAGTCTTCAAAATCTCCAAGACTTCCGTAACCGTCAGCGATTCTCTCggccattttg---aactg---------------aaatgaaaagagttgA------ACAAACAATGAAAGGAAACGCCATCTTTGAATTGCGATTCACAACTTATATACAAATCACGG------CGGAAGACCAGGAAGTAAaat-tgaaaggaaaag
i caeSp111.Scaffold629  C 0 I 55
s caePb3.Scfld02_0      1443772 238 +  4147112 -GAAACTAACATTGGCGTCCAATCAAAGTGAGCTTTCCATCCTGAATGAAAGTGTAGTGATAGTCGCAGAGTTCTCCGAGAGTTCCGAAACCATCAGCGATTTTCTCAGACATGTTT---CACTG---------------TAAAGAAGAAGGTAAAGTAAGTACAAACATCAGCAGAAAACGTCAATTCTGAA-CGCAATTCACGGTTTATATACAAA-CACGGTGCGGTCGGAAGACCAGGAagtgaa-----aaagggaaag
i caePb3.Scfld02_0      C 0 I 49
s caeJap4.Scaffold17545   69048 218 +   227596 AAAAACTTACATTTACGTCCAACCAAAGTCAGTTTTCCGTCCTGAACGAACGAGTAGTGGTACTCTTCCAACGGTCCCAGTTCTCCAAAGCCGTTCGCaattttctgagccattttt---atctg------------------------aaatttg-----ctttatttttaattttaaaa---------ata-tctaaaaaCCAACTTCT-TGCAAA-GTTGGAGGCGTTGGAAGACGAGGAAGTAAGAAAAATAAAGCGA--
i caeJap4.Scaffold17545 I 872 C 0

a score=-62658.000000
s ce10.chrX             3087452 247 + 17718866 ATGTTCTGGGCAAACGGCCAAAGGTTGAACTCAATTCGTTCTTC-----TATAGA-----------------------ATTGACG------------------------GTTCAAA-AAGACATT--------------------------TAGACATAGAAGTCCTTAGAAGATTTCTAGA-----AAACTGGTTG-----------------CAAAA--CATATTCGCAAAACATTACGAAACGACTCTT--------TGCCGAATAAAATGAAAAATTTA-----TAGAACATAATTGGACATATAATAT----TTTATGTGAGG--TTTCAATAATATATTCTCA-------ACAACTCAAAAGAAAACACA
s caeRem4.Crem_Contig0   269741 311 -  4500979 AGGAAACCGGTTAATGGCCATAGGTCAAACTCAATTCAATTCTTGATACTTTCAAAGAATATTTCAGTTCCTGTTTCGTTTGAGAAGAACGATGGTTCACCGAATCCATGTAGGAA-GAAAAGTT--------------------------TAATCGTAGAA---TGACGAAAGTGTACTGG----TAAACTGGTAGAGATAGAG---------TGAAATGGATACCTTGGAAGAATTGCAAAACAAATACCACCTATACTACTTTTTGGGTTC-AAGGTGGAGGGTTTCTGGGAAAATTATTGGTTTGACACCtcagtttttatatt----tcaa----------cTG-------GTGGCTTTTAAAGaatgaag
i caeRem4.Crem_Contig0  I 62 I 7
s caeSp111.Scaffold629   369640 251 - 33334924 GTGAAACCAGTTTTAGGACAAAAGTCAAACTTTATTCTAGTTGT-----TCTTAT-----------------------TTTGAGA-------------ATCAAAAtgttctagaaa-aagaaatc--------------------------gcaTTACGAA------------ATGTATGGA------AACTGGAAGATGAATCA---------CAGAA--AATACGAAAGTAACAT----GAAGAAACCTTA-------TACTGCATGGAATG-GAAGAGAA-----TAGAGAAAGGTATGAAATATGACAC----ATTctgagaaa----tcaa-aataaatgtttgCTTGG--GTTTTTATAGGAGAATTATA
i caeSp111.Scaffold629  I 55 I 54
s caePb3.Scfld02_0      1444059 308 +  4147112 acggaacCGGTTAACGAGAAAAGGTCAAACTCCATTctatttattgaaatcttaa-----------------------tgtgaaa-------ttttagatgaaatttttctggaaatacgAAATTATGAAATACGTTCAAACTGGAATTCAACATCACAGAA-----ATGAATATGTTTGGA---TTGCTGTGTTAGGTAAACCAAATCCGTGTTAGGACTAGTATTTGTGTAACat-----aaaacgtttca-------aaaattattaattg-aaatttga-----ttcaatTAAATAATTAATATCACTT----GTtatggaaactttttcaa-ag-------ctgCCGAGTAATGCTTCCAAGGAAATTAcg
i caePb3.Scfld02_0      I 49 I 29
s caeJap4.Scaffold17545   69266 121 +   227596 -----------------------------------TTGTCTTTT-----TTCTGA-----------------------TCCAAAA------------------AAGCATGTAcgga--aaatatc--------------------------aaataacAATA--------AATGTTGTCGTAAATATAAATTATT-------------------CAAAA----------CGAAGCAC-----------------------TAATCAAT--ATTG-AATGCGCA-----GAGAACAgca------------------------------------------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8138074 579 + 21540570 I

a score=72876.000000
s ce10.chrX             3087699 152 + 17718866 TC-------CAAAAATCGATAAATGCGC-----------AAGGTGAGAGGC--AAAAATGGCTTAGAGAGC-------GGTGTATTTCTATTGGGGAAGTCCAG-TTTTATACG---TGTTGTTTGCCAGGTGGCCAGTGACTCATTGTGGGAAAATTGGGAGAATAAACAATATTGCGAAAT
s cb4.chrX              8138653 153 + 21540570 tt-------aaAAAACGACCTAAACGAA-----------CAGTCTAAAACACGAAAAAAGACCTGGAGCGTCCAGAAGGGT-TATTTCTAAC-CGAAAGTCCGG-TTTTATATACTCTGCTATTTGCAATGTGGCGAATGACTCAGTGTGCGAA---------AACAAACAATATTGCGAAAT
i cb4.chrX              I 579 I 473
s caeRem4.Crem_Contig0   270059 152 -  4500979 ---------agaaaactgacaaATCTGA-GTTTGCCAGTGGGTTcggagaatgaaaaaagaccTGGAGAGC-------GGT-TATTTCTGAC-GGCTAGTCCGG-TTTTATACA--CGACTATTTGCAATGTGGCGGATGACTCAGTGTGGGAA---------AACAAACAATATTGCGAAAT
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold629   369945 161 - 33334924 TAACAAGCTTGAAAATCGATGAATTCATGGTTTAAAAGTGGGTTctgaggaagaaaaaagacctGGAGAGT-------ATT-TATTTCTGAC-GGCCCGTCCGGTTTTTATACA--CGAATATTTGCAATGTGGCGAATGACTCAGTGTGAGAA---------AACAAACAGTATTGCGAA--
i caeSp111.Scaffold629  I 54 C 0
s caePb3.Scfld02_0      1444396 154 +  4147112 TA-------CGAAAATCAATGAATGCAGGGTTCAAATCTGAGTTCTAAGGCACAAAAAAGACCTGGAGAGT-------ATT-TATTTCTAGC-GGCCAGTCCGGTTTTTATACA--CGAATATTTGCAATGTGGCGAATGACTCAGTGTGGGAA---------AACAAACAACATTGCGAA--
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold17545   69387 132 +   227596 -------gtgaaaaatggaaaaatagaa-----------aaattcggagtta-aaaaaaGACTTGGAG-GC-------GGC------------ATTTAGTCCAG-TTTTATACG--CGAATATTTGCGGTGTGGCGAATGACTCACGGTGGGAA---------AACAAACAACATTGCGAAAT
i caeJap4.Scaffold17545 C 0 C 0

a score=-10739.000000
s ce10.chrX             3087851 185 + 17718866 CAAATATTCT-TCATGAAATTTCCATGGAAAGAATGAACACTGTCGGAAAATATTGTTATGTAATT------------------CTCACAGTGAACAACAACACGATTGTCCAAAAAAAAACTTTATTCATAATACTGCAAAGAAG----GGTGAA-------AGTGAATCAAA---ATGGAACTTG----------ACGTATTTGGTCAATAG-------CAGTAGTATTTGCT
s caeRem4.Crem_Contig0   270211 208 -  4500979 ------TTTCTTCATG--ATTTACATGAATAGAA--------GTTGGAATAT-TGCATATGTAATC-----TCCTGAACATCATTCACCAGTAAACAAGATCTTTTCTttgcaaaaataatatttatgtgtgaaaaaaaagtgttttcacAGTGGGAAAAGTTGATGAATAGAG-TTATTGAAGTGGAATACTGT--CCAAAAAGAGTCAATAGATCGGAAAAA--GTGTTTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370106 198 - 33334924 -----ATTCTCTCATG--ATTTACATGAATAGAa--------gtc-aaaaatatgaatatgtAATCCAATCCGATGGACAATAAACTGCAGTAAACAAC-TCAACTTTTTGCAAA--------TCTTTTGTGAGAACACATCTTTC---CAGTGGA--------acgaatcaaa-aaacgaaacttGAACAGTGAACACAACAATAGTcaattgaatgagaaaatggtgTTTGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1444550 181 +  4147112 -----ATTCT---------TTTACATGaatagaa--------accaaaaaatatgaatatgtAATC------------CGATGAACAGCAGtaaacatc--aaaaactttgcAAA--------TCTTTTGTAAAAATCCAATTT------AGTGGA-GTATTCTATGAATGAGATGAACACAACTTGAATATTGA--ACAACAATGGTCAATAGagcgagaaaa-aatgtttgcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   69519 165 +   227596 ---ATCTTCCTTTAACTTCATTTCCTGTTTGGAA------------ATGCATTTTGTTATGCAATA---------TGAATGGAAACGAGAATAAAAATCGTCAACCTTGACt-----------tttatcatgaaaaaaaaca--------tgagaa--------ataaatttgg-aaatgaaaatg-----------aaaatattggtgaaaat-------CAATTGTGTTTGTT
i caeJap4.Scaffold17545 C 0 I 1171
e cb4.chrX              8138806 473 + 21540570 I

a score=4033.000000
s ce10.chrX             3088036 44 + 17718866 GCGAACATTTACGGGGAATTTGGTATTTGCT-TTTGTCTGTGTAC
s caeRem4.Crem_Contig0   270419 43 -  4500979 CGAAATATTATCGGAACTCTTGctgttttctgtgttttcaaGT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370304 44 - 33334924 CAAAACATTTACGGAATTTCTGATGTCTTTT-TGTGTTCGAACAC
i caeSp111.Scaffold629  C 0 I 90
s caePb3.Scfld02_0      1444731 41 +  4147112 cAAAGTATTTACGGGAAATTCggtgttttt----tgttggagtAC
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8138806 473 + 21540570 I

a score=1226.000000
s ce10.chrX             3088080 115 + 17718866 TGTAAATACAAAGAAGTTTTGATCAAAAGTAGAAGTACCTACTT--TAAAAGTGGTAAATCTG----AAAATTAAACAGTTTGATG---TCTTGTAGGCTA-----CCAAAAAACATCAGTTATACAGC
s caeRem4.Crem_Contig0   270462 126 -  4500979 TGTGAATACAGAGTGGTACTAGCGAACAGTTGACGAAAACAGTTCATGTAAATGTTCAACTtgatataaaattgaaa---ttgaggtTTTCTTCCAGGTTATCATTTCAAAGGAATTCATGCATGCAGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1444772 103 +  4147112 I
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8138806 473 + 21540570 I
e caeSp111.Scaffold629   370348  90 - 33334924 I

a score=0.000000
s ce10.chrX             3088195 1201 + 17718866  
e caePb3.Scfld02_0      1444772  103 +  4147112 I
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8138806  473 + 21540570 I
e caeSp111.Scaffold629   370348   90 - 33334924 I
e caeRem4.Crem_Contig0   270588    0 -  4500979 C

a score=91.000000
s ce10.chrX             3089396 1 + 17718866 T
s cb4.chrX              8139279 1 + 21540570 t
i cb4.chrX              I 473 C 0
e caePb3.Scfld02_0      1444772 103 +  4147112 I
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e caeSp111.Scaffold629   370348 90 - 33334924 I
e caeRem4.Crem_Contig0   270588 0 -  4500979 C

a score=-379.000000
s ce10.chrX             3089397 48 + 17718866 TTAAACATTTTCTATCAGGTTTCT---ACTTATATCGTGTTATCGTTTACT
s cb4.chrX              8139280 42 + 21540570 ----tcagctatcCTC-----TCTCACATTTGGTCCCTTTACTTCCTTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   270588 43 -  4500979 TTAATCAACTTTCATC-----GCT---ATCCGTGTCCTATTCTGGTTGATA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1444772 103 +  4147112 I
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e caeSp111.Scaffold629   370348 90 - 33334924 I

a score=45170.000000
s ce10.chrX             3089445 129 + 17718866 -----------------------------TTTTCCTTTTCAATTTGAAAAACCAAAGACATCA-CTTTTGTTATTCTCTCTAC---TTTTTCTTTTG---------AAGAACCTTGATTCGCAGGACATGTTTCAATGAAGTCGGAGAAGGTAAGAG----AAAAGTGACAAGTG
s cb4.chrX              8139322 170 + 21540570 ATTC--AGCTACTCCATTTCAAGTTGTGTAtttattctcgaaatttccgaaaaaaa-acatcatcttttgttatttttcttatctatttttcttctccttctctaaAAGAACCTTGATGTGTTCAGCATGTTTCGTTGACGTCTCAGAAGGGTAGAAGA--AGAAACGACAATTG
i cb4.chrX              C 0 I 508
s caeRem4.Crem_Contig0   270631 149 -  4500979 TCTCATAGCAAACCCCTT------------CTTATTTTTAACACTATAATCTTAAA-ACATca-cttttgttgttttcgtt-----tttcttttctc-------aaaagaacCTTGATGTGTTCAACATGTTTCAATGGAGTCTCAGAAggttagaaaaagagaaacgacaATTG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   370438 129 - 33334924 -----------------------------ttttccttttgaaataaaaccTTCAAA-ACATCA--TTTTGTTATCTTctttcc---ctatttttctc-------aaaagaacCTTGATGTGTTCAACATGTTTCAATGGAGTCTGAGATGGTTAGAG----AGAAACGACAATTG
i caeSp111.Scaffold629  I 90 I 29
s caePb3.Scfld02_0      1444875 129 +  4147112 -----------------------------TTTTCCCTTCGAAATTGAACTTTGGAA-CCATCA--CTTTGttattctctttct---cttatttttct-------taaaGAACCTTGGTATGTTCAACATGTTTCAATGGAGTCTGAGAAAGTTAGAG----AGAAACGACAATTG
i caePb3.Scfld02_0      I 103 C 0
e caeJap4.Scaffold17545   69684 1171 +   227596 I

a score=640.000000
s ce10.chrX             3089574 9 + 17718866 GTCTACAAC
s caeRem4.Crem_Contig0   270784 9 -  4500979 GTCGATCAG
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      1445004 8 +  4147112 -TCGATGAG
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I
e caeSp111.Scaffold629   370567 29 - 33334924 I

a score=7990.000000
s ce10.chrX             3089583 51 + 17718866 ------------GTTTGTTTTCAATTTGCGACACTGCACGCACAAAAACGCTCCGTTGAGAAC
s caeRem4.Crem_Contig0   270793 63 -  4500979 ACTTGCCGAGTAGTCTGCTAGTAACACAACGGTTTGCACgcacaacgacactccgctacTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370596 51 - 33334924 ------------GTCTGCCAGTAATCCCACAGATTGCACGCACAACGACGCTCTAATGCTAAA
i caeSp111.Scaffold629  I 29 I 31
s caePb3.Scfld02_0      1445024 51 +  4147112 ------------GTCTGCCAGTATTGCGATCTTTTGCACGCACAAGGTCGTTTTGTCTCTCAA
i caePb3.Scfld02_0      I 12 I 3
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I

a score=-2792.000000
s ce10.chrX             3089634 53 + 17718866 CGATTTGATCTTGCTCTACG-------------GCGTAC-Agttttgtgttgttattatgttgtttt-
s caeRem4.Crem_Contig0   270856 67 -  4500979 AGATTCGATCTGGCTCTACGCGCGGGATAATCCGCGCACACAGTCTGTTTCGTTGGTCTCTATGGTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1445078 61 +  4147112 --CTAATAAATGACTGTTTGCCTGTCCAAAGCGGT-----CATTCTCATTCGATGGTCCTTTCCTTTT
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I
e caeSp111.Scaffold629   370647 31 - 33334924 I

a score=-10587.000000
s ce10.chrX             3089687  94 + 17718866 ----gatg---------ttgtttcgatgGTCCGTCAA---TATCGACTGTCCTTC----ACAGTTAGTCTTCGAGCGGTGGTCTCTT----GTGTCGCCTTTTTTTCTCATTTGTCCT------------------
s caeRem4.Crem_Contig0   270923 104 -  4500979 GAGGGGCGACCACCTCCTCATTCGTGTGGACCATTCTCGCCTTGGACGGTTCTCT----TTTCTTGGTCC-----TCTCTGCCTCTt----attaattctttttttctc---tgccCCCT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370678  93 - 33334924 ----GGCA---------CTGTTTCGATGGTCCCTTCT-GTTGAGGA-GGTCATCTACCCCTCATTCGTGT---AGTCCACTCCTCTCGAGGAC--agtcgttttttct-------cctct----------------
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_0      1445139 103 +  4147112 ------------------GGTTGAGGAGGGCCGTTGA-CCTAAGGACAGTCGTTT-CTATTCATTAGTCTGCGATTCTCCCCCTCCC----At--aatctctctttct-------tctttttggtttttttgtctt
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I

a score=-3508.000000
s ce10.chrX             3089781 42 + 17718866 CCCCCCCT----TTACC-----------------------ACTGCGCAAATAGATTT--------------GGGATCTAATGT---------
s caeRem4.Crem_Contig0   271027 91 -  4500979 CCTCTCCTCGCCTTGTCTTTTCGTGTTGTGTTTTTTGGCAACTGCGC-AATCGCTCACAAACAAACAAGACGGCCTTTGCCGCATTGAGGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370771 58 - 33334924 cccCTTTT----TTACCTTCTTGCG--------CACACAAACCGCGC-ATTGGCCTA--------------GGTCTCAACGGCAT-------
i caeSp111.Scaffold629  C 0 I 1
e caePb3.Scfld02_0      1445242 56 +  4147112 I
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I

a score=9825.000000
s ce10.chrX             3089823 43 + 17718866 ATGTAAGTGCGCTCTACCGCAATCA----ATGGGTTTCTCCAAACAA
s caeRem4.Crem_Contig0   271118 47 -  4500979 atgaaaatgcgctccattgcgAATTTTCTGTAGGTTTCAATAAACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370830 41 - 33334924 TcgcaaatgcgctctactgCACTCT------AGGTTTCTATAAACAA
i caeSp111.Scaffold629  I 1 I 11
s caePb3.Scfld02_0      1445298 43 +  4147112 ATGCAATTTCGCTCTATTGCAAAAC----GAAGGTTTTTATAAACAA
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I

a score=907.000000
s ce10.chrX             3089866 13 + 17718866 ATGCCCTTGCCA-T
s caeRem4.Crem_Contig0   271165 13 -  4500979 ATGCCCTTGCCAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1445341 12 +  4147112 CTGCCCTTGACA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I
e caeSp111.Scaffold629   370871 11 - 33334924 I

a score=10782.000000
s ce10.chrX             3089879 67 + 17718866 TTGAGAAACGAAACAGAATCTCTTGAAAACATTTCTGATAACCGATTCGTTTTAGTTTTCTAC--AATC
s caeRem4.Crem_Contig0   271178 55 -  4500979 TTGAGaaacgaaacaaga-----agaaaacatttgcGATAACCGATTTGCTTTT-----CTGCAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370882 49 - 33334924 TTGACAaacgaaaca---------gaaaacatttgCGATAAGCGATTTGTTTGA-----CTGc------
i caeSp111.Scaffold629  I 11 C 0
s caePb3.Scfld02_0      1445353 45 +  4147112 ------AACGAAACA--A-----CGAAAACATTTGCGATAAGCGATTCATTTTG-----CTGC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   69684 1171 +   227596 I
e cb4.chrX              8139492 508 + 21540570 I

a score=223196.000000
s ce10.chrX             3089946 543 + 17718866  
s cb4.chrX              8140000 523 + 21540570  
i cb4.chrX              I 508 C 0
s caeRem4.Crem_Contig0   271233 515 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   370931 519 - 33334924  
i caeSp111.Scaffold629  C 0 I 32
s caePb3.Scfld02_0      1445398 518 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   70855 418 +   227596  
i caeJap4.Scaffold17545 I 1171 C 0

a score=-12050.000000
s ce10.chrX             3090489 44 + 17718866 --TTATATTAGGAAATAAGTATAGGAAATAAGT-TATAATGA--ACTAT
s cb4.chrX              8140523 32 + 21540570 --------TTCGAAATCATT------TGGGACG-TTTCAAGT--ATCTT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   271748 33 -  4500979 --------TACCACTCTACA------GATGACTCTCTCATGA--ACTGc
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      1445916 33 +  4147112 -------TCACAATGAAACC------CTCAACT-AATCataa--aattc
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545   71273 42 +   227596 TGATTTTAttcttttcaaca------aaaaaaa-gatcaaaatTACTGT
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   371450 32 - 33334924 I

a score=142665.000000
s ce10.chrX             3090533 134 + 17718866 -ATTTTTCAGCCAACTCGAGCCACCAGTTCGATCGCTCATACCATCAAGGTTGCCCATAAGATCGATGAGACCAGAGAGAAAGCTCTTCTCGGAGGTGGAAAGAAGCGCGTCGACGCTCAACATGCTCGCGTAAG
s cb4.chrX              8140557 134 + 21540570 -AATTTACAGCCAACCCGTGCCACCAGCTCCATCGCTCATACCATCAAGGTCGCCAAGAAAATCGATGACACCCGCGACAAGGCTCTTCTTGGAGGAGGAAAGAAACGTATCGATGGTCAACATGTTCGCGTGAG
i cb4.chrX              I 2 I 27
s caeRem4.Crem_Contig0   271783 134 -  4500979 -tattttcagccgacCCGTGCAACCAGCTCTATCGCCCATACCATCAAGGTCGCCAAGAAGATCGATGATACCAGAGAGAAAGCTCTTCTCGGTGGTGGAAAGAAACGTGTCGACGCTCAACATGCTCGCGTAAG
i caeRem4.Crem_Contig0  I 2 I 2
s caeSp111.Scaffold629   371482 134 - 33334924 -atttttcagccaACCCGTGCCACCAGCTCTATCGCTCATACCATCAAGGTCTCcaagaaaattgatgagaCCAGAGAGAAGGCTCTTCTTGGAGGAGGAAAGAAACGTATCGATGCTCAACATGCTCGCGTAAG
i caeSp111.Scaffold629  I 32 I 15
s caePb3.Scfld02_0      1445950 134 +  4147112 -tcttttcagccAACCCGTGCCACCAGCTCTATCGCTCACACCATCAAGGTATCAAAGAAGATCGATGCTACGAGAGAGAAAGCTCTTCTTGGAGGAGGAAAGAAGCGTATCGATGCTCAACATGCTCGCGTAAG
i caePb3.Scfld02_0      I 1 I 10
s caeJap4.Scaffold17545   71315 135 +   227596 ATGCTTTCAGCCAACCAGGGCTACGAGCTCCATTGCTCATACCATCAAAGTAGCTCATAAGATCGATGAGACTAGAGAGAAAGCTCTTCTTGGAGGTGGAAAGAAGCGTATTGCTGCTCAACATGCTCGCGTAAG
i caeJap4.Scaffold17545 C 0 C 0

a score=-10356.000000
s ce10.chrX             3090667 33 + 17718866 ---ACATTTTTCCAAAAAA----AAAAACCTACTTAT-------ATG
s caeRem4.Crem_Contig0   271919 30 -  4500979 ---ACTTTATCCCCTAAGG-----------TAATTCATCaaata---
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   371631 17 - 33334924 ---------TTCCGAAGCA-----------Tcctatt----------
i caeSp111.Scaffold629  I 15 C 0
s caePb3.Scfld02_0      1446094 23 +  4147112 ---Acagtattcagaaaaa-----------tattcgc----------
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17545   71450 37 +   227596 TCTGCCTTtttaaataatgaaaaaaaaatacaataag----------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8140691 27 + 21540570 I

a score=1954979.000000
s ce10.chrX             3090700 2205 + 17718866  
s cb4.chrX              8140718 2375 + 21540570  
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   271949 2216 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   371648 2235 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1446117 2227 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   71487 2112 +   227596  
i caeJap4.Scaffold17545 C 0 I 33

a score=-9196.000000
s ce10.chrX             3092905 35 + 17718866 GGATATATCTCATTGTGATT-------CTGAAATTAGGCGAT
s cb4.chrX              8143093 41 + 21540570 TGA-ATGGGAtattaaaattataaaatccgAGATTTATGGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   274165 34 -  4500979 TAATATAGATTCTCAGAATC---AAATTCCAGTTTTG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   373883 33 - 33334924 aaa-ttttgtttaCAGTTTT---TAATCTTTAGTCAG-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1448344 33 +  4147112 AAA-ATGTATTCATAGAACT---TGAACATCGATTCT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   73599 33 +   227596 I

a score=197422.000000
s ce10.chrX             3092940 570 + 17718866  
s cb4.chrX              8143134 495 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   274199 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   373916 514 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1448377 514 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   73632 545 +   227596  
i caeJap4.Scaffold17545 I 33 I 104

a score=689931.000000
s ce10.chrX             3093510 1180 + 17718866  
s cb4.chrX              8143629 1174 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   274755 1150 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 129
s caeSp111.Scaffold629   374430 1129 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1448891 1165 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   74281 1543 +   227596  
i caeJap4.Scaffold17545 I 104 C 0

a score=3474.000000
s ce10.chrX             3094690 10 + 17718866 ATTCAAGAAA
s cb4.chrX              8144803  4 + 21540570 ATTC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   375559 10 - 33334924 ATTGAAGAAA
i caeSp111.Scaffold629  C 0 I 78
s caePb3.Scfld02_0      1450056 10 +  4147112 ATTCAAGAAA
i caePb3.Scfld02_0      C 0 I 208
s caeJap4.Scaffold17545   75824 10 +   227596 attcgaGAAA
i caeJap4.Scaffold17545 C 0 I 200
e caeRem4.Crem_Contig0   275905 129 -  4500979 I

a score=-2133.000000
s ce10.chrX             3094700 307 + 17718866 AATGGAATCGGTGTGGATCTAGCCATGCGGTTAACG---GAAGACGATTTATGACCGG-----CTATTCCACGCGTATGTGGAGCTAGATTTGTAGCTTGTTTGAAATTCCTACACTATTCGAACAAGTTATGTTCATTTTACTTTACAGAGTCTGATAAGAATTGAAAACCAAGAATAAATAAACATCCCCCCTCCCCTAATTTTACTTTTTCTACGTTACCATGTTTAGTGGTTAGATCGGTTTATAATTCTCTTATAAACCTTCACAGTTACCTCTTAAAATGTTAAATTTTGTTCTGAAGTTTTCCAAAAT
s cb4.chrX              8144807 192 + 21540570 -----------------TCAAGCTATATGACCAATGCATGAAGATAACATACGGAAGGAGGGATTCTATCAGGTATACCTATAACTA---CTGTA--------------CCTA-ACCATTTGATAGGCAGAAACGCATTTT-------AAAGTCTGATTA-------------------------------------------TTGGCCATTTc-----tactattttcaggagtc----------------------tggagctccactgtcaagtttcaaaa-----------actttggagtttcaaaaact
i cb4.chrX              C 0 I 172
e caePb3.Scfld02_0      1450066 208 +  4147112 I
e caeJap4.Scaffold17545   75834 200 +   227596 I
e caeSp111.Scaffold629   375569  78 - 33334924 I
e caeRem4.Crem_Contig0   275905 129 -  4500979 I

a score=0.000000
s ce10.chrX             3095007 226 + 17718866 AGATTGCGGCCTATCAATTTTACCTTTAAATCGAGTGATGAAAAAAAATGCGCTGTTAAAACAATTCTTACATGAAATAGTTTTAAATAAGATATAAGTACAGGGTGGTCCATAATTATGGACCACCCTGTATAAATGAGTCAAAAAATGTATATAAGAGTAAAATGTAAAACATAAAGTGAGATATAAACGGAATAACATTATAGAAGTTGTTTTTATTAGATTT
e caePb3.Scfld02_0      1450066 208 +  4147112 I
e caeJap4.Scaffold17545   75834 200 +   227596 I
e cb4.chrX              8144999 172 + 21540570 I
e caeSp111.Scaffold629   375569  78 - 33334924 I
e caeRem4.Crem_Contig0   275905 129 -  4500979 I

a score=246.000000
s ce10.chrX             3095233 166 + 17718866 AAATCGTGTTACACCCCTTTTTTATTAAAAGTTGCCAAAGTGTGTTC--TTCAGAAAACACACCATTTGCATGTCAGATTCTT---AAGTTGACCAGTTCAATGCAAACATTCAGTCAAAATTTCTACAAATGTGTAACCAAGAAGTCAGTTCCGTGAAATTTTTGTGAGC
s cb4.chrX              8145171 150 + 21540570 aaattctgtga------------atctaAAGTCCTCAATCTAGGTTCATTTC-----AcgttcttttttaatttcgaagtGTTTGAAAGCTGGACAGCCGAGCTCCTAACTATGATCAAAATGAACagaaat---caactaaaaaaatatttttgc-aaaTATTTCTGACC
i cb4.chrX              I 172 C 0
e caePb3.Scfld02_0      1450066 208 +  4147112 I
e caeJap4.Scaffold17545   75834 200 +   227596 I
e caeSp111.Scaffold629   375569  78 - 33334924 I
e caeRem4.Crem_Contig0   275905 129 -  4500979 I

a score=-1646.000000
s ce10.chrX             3095399 21 + 17718866 -----------ATTTGAAAATACGTGAAATAA-----
s cb4.chrX              8145321 30 + 21540570 AGTACAGTTTATTATCAA--TTCATGAAGGaa-----
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold629   375647 21 - 33334924 -----------atatgaa-----aaaaaggaacatAA
i caeSp111.Scaffold629  I 78 C 0
e caePb3.Scfld02_0      1450066 208 +  4147112 I
e caeJap4.Scaffold17545   75834 200 +   227596 I
e caeRem4.Crem_Contig0   275905 129 -  4500979 I

a score=-1513.000000
s ce10.chrX             3095420 4 + 17718866 AAGT-
s cb4.chrX              8145362 4 + 21540570 aaca-
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   276034 4 -  4500979 AAAT-
i caeRem4.Crem_Contig0  I 129 C 0
s caeSp111.Scaffold629   375668 4 - 33334924 -ATGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1450066 208 +  4147112 I
e caeJap4.Scaffold17545   75834 200 +   227596 I

a score=-14300.000000
s ce10.chrX             3095424 237 + 17718866 CACCAAGCAAGACAT-----TTATTT------------TTCAAAAAAGCAAGCATTACTACTATTTTCGAATGGGG---AAC-ACCCGTAAATTTATATTACAGACA-TCAGTAA--TGTAACGAA---GTTCACCTATTACAGAATAG-ATAAATAAATATATTACAAA------------------GCATGGTTCAGTAAGT--ATTAGAGTTCT---G-ataaattaaaactaaattttaaatgaattaaaacaacaaaatt----caataaaa--------------ttatt--CGTCGTAATAT
s cb4.chrX              8145366 213 + 21540570 GATCCAGGCATGCTTGATTACTATATATTTGGCA----TTTCATT----------------CGTTT-------------AAA-ACCCGTCGAATTATATTACAGACAATTAACAAAATGGG------CTGTTGGACTataacaaaaaatcacatttaaAAACATTA----------------------GCATCAATAAATAAGTAGATTAGCGTTAGCTta-ataaat--aattca----------------------tcagatT--C-TAGTACAAAATGTTGTTT----TAATT--AACAATTAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   276038 254 -  4500979 GGTCAAGTCAAACAT-----TTATTTAAATGGTAT---TTTCATTAAGCAGA-------GCCATTTTTGAGAAAGGGAAAGC-ACCCGTATAATTATATTACAGAAAGTTAACAAAATCAGAATAA-TCGTTGAACTATTACATTATATCACAGTATGAAGTAAT-----------------------GCATAAAACATGGGGCctattaaatatttttca-ataaat--aaattaaga---aa---actTGTAGTT-TCGAATTGGC-AAATAGTAAATAACCGAA----TACTTAAAACAATGACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   375672 259 - 33334924 GATGAAGCAAAAGTT-----ttactcgaaaaaaagacaatttACAGAGCacg-------acaattttttgaggggG---AGC-ACCCGTATAAATATATTACAGACA-TCAAGAA--TTAGATTATTTTCTCAAGCTATTACA--GTATCACAGTATAATGTATTAAAACGTCACCTATCTGTTTTTAGAATAAATTATaacacaaaa------------atatgaat--aatcggtaattcaa---aattaaagttATAAAATT--T-CGATGAAACGTATCTCGT----TGATT-----AATGGCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1450274 266 +  4147112 CAGCAAgcaatattt-----ttattcgaaaaagaCAC-ATTTGCAAAGCAGG-------ACAGTTTTCGATGGGGA---AAAGACCCGTTTAATTATATTACAGAtagttttgaa----aggaaaatcTCTCAAGCTATTACA---TATCACAGATTAGTGTTTTAAAAGTCAGCCTAATAGTCgtttgaataaataataacACAGAT------------A-ATAAAT--Attacaaagttcaa---aatgttaaCTAAATAATT--CGCCTTAAAAAGTGGTTAGTCTGATGATTATATCAATGGCAT
i caePb3.Scfld02_0      I 208 C 0
e caeJap4.Scaffold17545   75834 200 +   227596 I

a score=315795.000000
s ce10.chrX             3095661 399 + 17718866 TAGTGTTGTTGAGCAATTTCTGAGAAGAACTGAAGTACAGTGTCAGTGGAAACTTCGAGCTCAATCTTCGAGCCTGGGTAACAAGTGAGAATCAGTTTGTTGTATTCCGCAATTTGCTTGACAAATTGCTCTTGCATATCTCTCCATACAACTTGCAAAAGTGATGAATTGGCAACCAGGTTCTTCTCAATTTTCTTGTACAGTTGCTCGAGTCCTTTTTTCACTTCTTTTCCCGGATGTTGTGAAATTACCTGGAAAATTTA--------TGAAATGGCG-----------ATTTTGATGATTAACTAGAAATTCAACCTTTTTAAGCTCAATGCGACTGAATTGTTGTTGATACGAGATTTCATCAGGACGAATTCCACGCGTTTCGATAAAGTTGTTGACATTGTCGAAGAACGT
s cb4.chrX              8145579 399 + 21540570 TAATGTTGCTGGGCAATTTCTGAGAAGAACTGAAGCACGTTATCAGTCGACACTTCAAGCTCGATTTTGATTCCCGGATAGCAGGTTAGAATCAACTTGTTGTACTCGGCAATCTGCTTGATGAACTGCTCCTGCATGTCTCTCCAGACGACTTGAAGAAGGGACGAGTTGGCAACCAGATTCTTCTCAATCTTTTTGTACAGTTGTTCGAGACCTTTCTTAACCTCTTTTCCAGGATGCTGAGAGATGACCTGGAAaacaaagtatttttttaagGAAAG-----------CGTTTGGTGAT--------GTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   276292 401 -  4500979 CAGTGTTGTTGAGCGATTTCGGAGAAGAACTGGAGTACATTGTCTGTCGATACTTCCAGCTCAATTTTAGAGGCAGGGTAGCAGGTGAGAATCAATTTGTTGTACTCGGCAATCTGTTTGATGAACTGTTCTTGCATATCTCTCCAGACAACTTGAAGAAGGGAAGAGTTGGCAACCAAGttcttttcaatctttttgtACAATTGCTCAAGCCCTTTCTTGACTTCTTTTCCGGGGTGTTGAGAAATGACctacaaaataaa---------taaatagagGATTAATAACCCATTAAATGCT--------agttttacctttttcagttcaattctGCTGAATTGTTGCTGATATGAGATTTCCTCCGGACGAATTCCTTTCTTCTCAATGAAGTTGTTCACGTTATCGAAGAATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   375931 393 - 33334924 TAGTGTTGTTGAGCAATTTCTGAGAAGAACTGAAGAACGTTGTCTGTCGACACTTCTAATTCTATCTTTGACCCCGGATAGCATGTGAGAATCAGTTTGTTGTATTCGGCAATCTGTTTGATAAACTGCTCTTGCATATCTCTCCATACAACTTGAAGAAGGGACGAGTTGGCCACCAAGTTCTTCTCTATCTTCTTGTAAAGAGCCTCTAACCCCTTTTTCACTTCCTTTCCTGGGTGTTGGGAGatcacctgaaaaataaa--catgtTTGAAGTTATG---------CCCACTGCATG--------------TTACCTTTTTGAGTTCCATTCTACTAAACTGTTGTTGATAGGAAATCTCTTCAGGTCGGATTCCCTTCAACTCGATGAAATTGTTGACGTTGTCAAAGAATGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1450540 350 +  4147112 TAGTGTTGTTGAGCAATTTCTGAGAAGAACTGAAGCACATTGTCTGTTGACACttcaagttcaatttttgatccgGGATAGCATGTTAGGATTAATTTGTTGTATTCGGCAATCTGCTTGATGAACTGTTCCTGCATATCCCGCCATACTACTTGAAGAAGCGATGAGTTGGCCACTAAattcttctcgattttcttgTAAAGCTGCTCCAGCcctttcttcacttcttttccTGGATGTTGTGAGA--------------------------------------------------------------------TTACTTTCTTGAGTTCAATTCTACTGAATTGTTGTTGGTAGGAGATCTCTTCTGGACGGATTCCTCTCATTTCGATGAAGTTGTTGACGTTGTCGAAGaacgt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   76034 398 +   227596 TAATGTTGTTGAGCAATCTCGGAGAAAAACTGAAGCACATTATCCGTACAAACATCCAATTCAATCTTGGAACCGGGATAGCACGTGGAAATGACTCGGTTGTACTCCGATATTTGTTTGATAAATTGTTCCTGCATATCTCGCCAAACGACTTGAAGAAGCGACGAGTTGGGAACCAGATTCTTCTCAATCTTCTTATATAGTTGTTCGAGTCCTTTCTTCACTTCTTTTCCTGGATGTTGAGAAATCACCTGCAACTTTAT-----GTATGCATGAAAA-----------CGTCCAATATT----TAGTAGTCTCACCTTTTTAAGCTCAATCCGACTGAATTGCTGCTGATAGGAAATCTCATCGGGACGGATTCCTCTAAGCTCAATAGCATTATTCACATTGTCAAAGAATGT
i caeJap4.Scaffold17545 I 200 C 0

a score=3904.000000
s ce10.chrX             3096060 8 + 17718866 CTGAAATT
s cb4.chrX              8145978 8 + 21540570 CTGGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   276693 8 -  4500979 CTGCAATt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   376324 8 - 33334924 CTGCAACT
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1450890 8 +  4147112 ctgaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432 0 +   227596 C

a score=-4021.000000
s ce10.chrX             3096068 21 + 17718866 TTTGGAATACATATCGATAGT---------
s cb4.chrX              8145986  1 + 21540570 -------T----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   276701 14 -  4500979 -------tttatcttgaaagt---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1450898 18 +  4147112 ------------tttgaaagtaatGTAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432  0 +   227596 C
e caeSp111.Scaffold629   376332 13 - 33334924 I

a score=-3360.000000
s ce10.chrX             3096089 63 + 17718866 TTTGGGAGATTTTTGTTTAAAGGTGGAGTaccgaaattcgaatgagatgtttt----gaaaattcct
s cb4.chrX              8145987 43 + 21540570 -------GATTATTGGT---AGTTAGATGA--------------AGGCGTTCTGTCACAGAATCTCT
i cb4.chrX              C 0 I 274
s caePb3.Scfld02_0      1450916 26 +  4147112 ----GAAGATTTTCG-----AGCTGG-------------------GGC---------CAAAAT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432  0 +   227596 C
e caeSp111.Scaffold629   376332 13 - 33334924 I
e caeRem4.Crem_Contig0   276715  0 -  4500979 C

a score=-4829.000000
s ce10.chrX             3096152 325 + 17718866 caaaaaaagttatggaggttcaaagtcggaaaaaaggttttgcagctaaaatcacaatttttacaacttctcggtgtcgcagcgtctggaacttaatttttatttattgatcactctttaataaatttgttggtcttttatTGGGCGTATATGCGCTGAATTGTTGGGTCTAAAATAGCAAAGCCTCAAATTTTGGTACTCCAACTTTAAACTATGGTAGAGTGCCTTTTTTTACAAATGTTGTAGAATGACAAGCCAAAATTAGAAAGAAAAAACTAGTTTAAAGCATAATAGTCAAGTTTTTTTTCAAGCATTGGCAGCACAG
s caePb3.Scfld02_0      1450942 112 +  4147112 -AGAAATAGCTA-------------------------------------AATAACAA------CAACGTCCC----Tcaca----------------------------aacagtttttgatagaTATGCACGTTATTCATC------------------------------------------------------TGCTAGAACCCTAGACTATGAGTACATGCCACTT---ATAAAT-------------------------------------------------------TCAAGT-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432   0 +   227596 C
e cb4.chrX              8146030 274 + 21540570 I
e caeSp111.Scaffold629   376332  13 - 33334924 I
e caeRem4.Crem_Contig0   276715   0 -  4500979 C

a score=-859.000000
s ce10.chrX             3096477 11 + 17718866 TATTGAAACAT-
s caeRem4.Crem_Contig0   276715 11 -  4500979 tattgaaaaga-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1451054  5 +  4147112 -------GAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432  0 +   227596 C
e cb4.chrX              8146030 274 + 21540570 I
e caeSp111.Scaffold629   376332 13 - 33334924 I

a score=273.000000
s ce10.chrX             3096488 1 + 17718866 A
s caeRem4.Crem_Contig0   276726 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   376345 1 - 33334924 A
i caeSp111.Scaffold629  I 13 C 0
e caePb3.Scfld02_0      1451059 0 +  4147112 C
e caeJap4.Scaffold17545   76432 0 +   227596 C
e cb4.chrX              8146030 274 + 21540570 I

a score=-6983.000000
s ce10.chrX             3096489 22 + 17718866 AATTT------CCATAT--------TTATATATCAC
s cb4.chrX              8146304 18 + 21540570 AATTTCCT---TCTTAC---------------TTAC
i cb4.chrX              I 274 C 0
s caeRem4.Crem_Contig0   276727 32 -  4500979 aatattacaAGTGTTGC----ATAATAATATGTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   376346 25 - 33334924 AATTT------CCATACAGAAGTTAACAT-----AC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1451059 23 +  4147112 -------------GTACTCTCATTATCATTCCTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   76432  0 +   227596 C

a score=204947.000000
s ce10.chrX             3096511 283 + 17718866 CTGAATCTCTTTGAGTGGACGACCCATAAACTCTTTTACGTACGCATCAATATGTTCTTCCTTGAGCGCTTTCGCATCTTTTCGTTGTTGATCCAAACATGAGATTTTTAGCTCCGACAAAGTCACTGAAACATTTATCACC-------ATCACACTTTATTGTTT----------CCTAGAACACTTACAATAGAGCTCGTGGTAATTTTCAAACTTGACTACAGACGACGGAGACTTGCTGTATTGATTGGCGGCAGCTTTTTGTATCCCGTCACAAACCGCCCGGCAAAGATTGAAA
s cb4.chrX              8146322 280 + 21540570 CTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGttactaaaaaa-gaaaaatt------------aatttaaaactG-------ATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   276759 285 -  4500979 CTGAATTTCTTTCAGTGGCCGGCCCATAAACTCCTTGACATAAGCATCAATATGCTCTTCCTTGAGGGCTTTGGCATCTTTTCGCTGTTGTTCAAGGCATGAGATTTTCAACTCGGAGAGAGTAGCTGCAAta-aaaaaacc-------a-taaaattcaTAATTGC------ATGCCATTGCAACTAACACCACAGTTCTTGGTAATTCTCAAACTTTACAACCGATGACGGGGACTTGCTGTAAGGATTTGCAGCTGCTTTCTGAATTCCGTCACAAACTGCACGACACAAGTTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   376371 282 - 33334924 TTGAATTTCTCTCAATGGCCGACCCATAAACTCCTTGACATAGGCATCAATGTGCTCTTCTTTCAGTGCTTTTGCATCTTTGCGTTGTTGATCGAGGCAAGCGATTTTCAATTCCGAGAGTGTCACTGAAACC-AATTCAtgttctctcattttctttccaa-----------------taAACACTTACAGTAGAGTTCATGATAGTTTTCAAACTTGACAACCGAGGATGGCGATTTGCTGTACGGATTAGCAGCtgctttttgaattccatcACAAACAGCACGACATAAATTTAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1451082 286 +  4147112 CTGAATCTCTTTCAATGGACGACCCATAAACTCCTTGACATATGCATCAATATGTTCCTCCTTGAGTGCCTTAGCGTCTTTTCGTTGTTGATCGAGGCAGgcgattttcaattctgacAGCGTCACTGGAAAG-AAAGCGTG-------ATTTTATTTCGGAAGTCT------ATGACTTCACAACTTACAATAAAGTTcgtgataattttcaaatttgacaaCTGAAGAAGGTGATTTGCTGTATGGGTTGGCTGCTGCTTTCTGAATTCCGTCGCAAACGGCACGACACAAGTTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   76432 287 +   227596 TTGGATTTCTTTCAACGGGCGGCCCATGAACTCTTTTACGTACGCGTCAATATGTTCTTCTTTCAGAGCCTTGGCATCCTTTCTCTGCTGATCAAGGCATTGAATCTTGAGTTCAGAAAGTGTCACTGCAAGA-AAA------------GCCATATTGgcaaactgttgaaaaaaaacgagacaaCTTACAGTAAAGTTCAtgaaagttttcaaatttgacAACTGAAGACGGTGATTTACTGTAAGGATTTGCCGCTGCTTTTTGAATTCCGTCACAGACTGCGCGGCACAGGTTGTAG
i caeJap4.Scaffold17545 C 0 I 1185

a score=646246.000000
s ce10.chrX             3096794 895 + 17718866  
s cb4.chrX              8146602 844 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   277044 897 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   376653 890 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1451368 893 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   77904 847 +   227596  
i caeJap4.Scaffold17545 I 1185 I 2037

a score=64523.000000
s ce10.chrX             3097689 211 + 17718866 ATTGCAAGCCTTTGGACGGTTCGTTTTCAGCCAGTTGATAAGATCAGAGAGTGGAGAAAGGGCGCGAAAGCGTTGAGACTGTTTTGGAATACACAGTTCATGCCACTCATGATCCAAAGATAAGTCGTTCTGAA-----------AAAAAAACACGCGTTGAAAATGATTTTATACAGTGCGCGCGCTTGCTACAGGATTCTTCTAAAAT-TTATAATAG------------ATG
s cb4.chrX              8147446 184 + 21540570 GTTGCATGCCTTGGGGCGATTGGTTTTCAGCCAGTTGATGAGGTCGGAGAGTGGTGAGAGGGCGCGGAAACGTTGAGATTGCTTTGGAATGCATAGCTCGTGCCATTCGTGGTCCAGGGACAAGTCGTTCTGGAATGAATTCGGTAA-----------TT----ATTGAACTATGTGGTTTTCC--------------------CAAAAT-TTATAATCA---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   277941 164 -  4500979 ACTGCATGCTTTTGGACGGTTTGTTTTGAGCCAATTAATCAAATCAGACAGTGGTGAGAGAGCACGAAACCTTTGAGATTGCTTGGGGATGCACAACTCATGCCATTCATGATCCAACGAGAGGTCGTTCTGGA-----------AA-----------TT----ACCAAGTTAT------------------------------TAGAATACTACAACCA---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   377543 151 - 33334924 ACTGCAAGCTTTCGGCCGGTTTGTCTTTAACCAGTTAATCAAATCGGATAGTGGAGAAAGAGCTCGGAACCGCTGGGATTGCTTTGGAATACACAGTTCATGCCATTCATGATCCAAAGACAAATCGTTCTGAA-----------A----------------------------------------------------------CAATTGTTCACAATAA---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1452261 189 +  4147112 ACTGCAGGCTTTTGGACGGTTGGTTTTTAACCAATTGATCAAGTCGGAGAGAGGAGAAAGTGCTCGGAATCTTTGAGATTGCTTGGGAATGCACAATTCATGCCACTCGTGATCCAAAGACAAgtcgttctgaa-----------aa-----------------atcgattggtGTGAAGTTAGAACTT---------------TAGTGGTTCAATATAGGAATAGAAAATG---
i caePb3.Scfld02_0      C 0 I 158
e caeJap4.Scaffold17545   78751 2037 +   227596 I

a score=-18784.000000
s ce10.chrX             3097900 106 + 17718866 TATTGAAAAAACTCCACATTTTAACGTGAATCTATTGTGAA-ATTATGGTATGTGATGTAAAAAAAGCTTCGCATGCGC-----------------------------TGTAAAATATCTGAAATTCGAGAATTTT
s cb4.chrX              8147630 130 + 21540570 AACTGATCAAACTCTAC-CgttaattgaaaacttttgggAAAATACTAG---GTCATGCCACTGACGATTGAGCTACGCGGCCGCAAAACCGTCTCTCTATctcaaaatgtgaaattcccaaaact--agaatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   278105  29 -  4500979 CGGTGGC----CTCTTC---TTAGTTAAAAAC-----ggaa-----------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   377694  16 - 33334924 --------------------------------------GAA-ATATAAG--TGTTAT-------------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1452450 158 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I

a score=-6272.000000
s ce10.chrX             3098006  40 + 17718866 GG-----------TTGAAATTTTCAAAAAA----------------------TTCAGAGGGTCCTTT---------------------------------AGCGAG
s cb4.chrX              8147760 106 + 21540570 agaaaaatgttctCATCATTATTCTCAATGGGCCAATTTCAGGCTGGCACGGGTCGGCTGGTGACtcgcttcaaatttgaaactgcGGATAAAACAATAGATCAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   278134  27 -  4500979 -------------tgtcatttttc----------------------------atctgcttgt--------------------------------------atcaaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1452450 158 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   377710   0 - 33334924 C

a score=-16199.000000
s ce10.chrX             3098046 74 + 17718866 -----------------------------AGCGTGACCTCCGGAATTCTCTAATACTTCTACAATTTAGGGGGTCCTCGAGCAAGCAAGCACACGTTCATTGA
s cb4.chrX              8147866 93 + 21540570 -AGATAGAGCTCGGGGAGCGCTACAATTTCCAGTAAAATTCAAGC---AGTATT-----TGTTTCAGCCTAGGTTT-ATAGCACGCAGGGGAAAAATCATCGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   278161  8 -  4500979 -aaatagaa----------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1452608 61 +  4147112 AACATCAAA--------------------ACCGTAAATCCCCAACTTGTATATTCACTGTGTACTATCCAAAGTTTGATAT----------------------
i caePb3.Scfld02_0      I 158 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   377710  0 - 33334924 C

a score=397522.000000
s ce10.chrX             3098120 850 + 17718866  
s cb4.chrX              8147959 974 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   278169 881 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   377710 843 - 33334924  
i caeSp111.Scaffold629  C 0 I 23
s caePb3.Scfld02_0      1452669 947 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I

a score=-5711.000000
s ce10.chrX             3098970 24 + 17718866 AAAGTTGAAAGTATTATAGTTGGA------------------
s cb4.chrX              8148933 30 + 21540570 ------------aatttagTTGGAATTGGAATGGAGAATTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279050 25 -  4500979 ------------AATATGAATAGCACTCGAATGAG-----CT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1453616 19 +  4147112 -----------TGATTTATTTGTTATTTCC------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378553 23 - 33334924 I

a score=68386.000000
s ce10.chrX             3098994 107 + 17718866 TACCTTGTAGAGTTCTCGAATGAACTCGTCCTTTTCCTCAGCGGAACCAGCCAAAATCACATATTGATGATCACCGATAGTGATGTGGAACTCTGGTGATGCCTGAA
s cb4.chrX              8148963 107 + 21540570 CACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATggctaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279075 107 -  4500979 CACCTTGTATAGTTCTCGAATGAAATCATCTTTCTCTTCAGCAGATCCAGCTAGAATGACATATTGACGGTCGCCAATAGTAATATGAAACTCCGGAGAGGGCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   378576 107 - 33334924 CACCTTGTAAAGTTCTCGAATGAAGTCGTCTTTCTCTTCAGCTGAACCTGCCAGAATCACATACTGCCTGTCGCCGATGGTGATATGGAATTCTGGTGAGGGCTGAA
i caeSp111.Scaffold629  I 23 I 12
s caePb3.Scfld02_0      1453635 107 +  4147112 TACCTTGTAAAGCTCTCGAATgaaatcatctttttcttctgctgAACCAGCAAGAATCACATACTGACGGTCTCCAATGGTGATGTGGAATTCGGGCGATGGCTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I

a score=-10518.000000
s ce10.chrX             3099101 71 + 17718866 TTTTTTTAATGTTTGTCAGTTGAATAAAATTCT-----------------CAATTTTTTTTAAACCCAAAAAAACTTGAAGTAAATGC
s cb4.chrX              8149070 16 + 21540570 -----------------aaaaaaatcgaaatct-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279182  6 -  4500979 ---------------------------AGTTGT-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1453742 69 +  4147112 -------------------GAAAATAGATTTATGCGAGTCATCAGCTCTCAATTTGCTCTCGGGGAACAAAATGGTTAAATTCAATAC
i caePb3.Scfld02_0      C 0 I 203
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378683 12 - 33334924 I

a score=-1276.000000
s ce10.chrX             3099172 11 + 17718866 GAATTTAACTA
s cb4.chrX              8149086  5 + 21540570 gaCTA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279188  3 -  4500979 GAA--------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1453811 203 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378683 12 - 33334924 I

a score=-2539.000000
s ce10.chrX             3099183 140 + 17718866 ATTGATAAGCCATTTTGTCAAAATAATTCCTGCAATTTGCATCATCTTTTCGACAAATTTAGTGTACAATAACTATTCTTTCAACAACTTCTCACCTAACTTTAGCTAATTGCAATTTTTACAATTGATAAAGATCGTTG
s caeRem4.Crem_Contig0   279191  24 -  4500979 -------------------------------------------ATCTTTTTGACAGG-------------------------AACAATTTCT------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1453811 203 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e cb4.chrX              8149091   0 + 21540570 C
e caeSp111.Scaffold629   378683  12 - 33334924 I

a score=-2520.000000
s ce10.chrX             3099323 67 + 17718866 AAAAGTTGCGGCAAAATGGCGAATTTTTAGCTATTTTAGGTTGATAAACTCCATCAAACATTAGTGT
s cb4.chrX              8149091 50 + 21540570 ----------GGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279215 35 -  4500979 --------CGGCAAACTGTCaggtttttggtttctt----ttagTAT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1453811 203 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378683 12 - 33334924 I

a score=-1699.000000
s ce10.chrX             3099390 56 + 17718866 TCGTAAAACTTGAAAATCCTCAGTTATTCGAGAAGCTTCACATTTTTTGCGTTATG
s cb4.chrX              8149141  3 + 21540570 TCG-----------------------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1453811 203 +  4147112 I
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378683 12 - 33334924 I
e caeRem4.Crem_Contig0   279250  0 -  4500979 C

a score=-2701.000000
s ce10.chrX             3099446 49 + 17718866 TTCTTCGTTACGCTCACATTTGCTCACTACATATATCGTATAAATTGCG---
s cb4.chrX              8149144 15 + 21540570 --------------CCCATGTGCTTATTA-----------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1454014 46 +  4147112 TACTCCGTCA----CAAATGTATTTCATA--TTTAGGAGACGATTTGGCGCA
i caePb3.Scfld02_0      I 203 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeSp111.Scaffold629   378683 12 - 33334924 I
e caeRem4.Crem_Contig0   279250  0 -  4500979 C

a score=796.000000
s ce10.chrX             3099495 12 + 17718866 TGAATCCATATA
s cb4.chrX              8149159 11 + 21540570 -GAATCTGTCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   378695 10 - 33334924 TGAA--TACCCA
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0      1454060 12 +  4147112 TAACTTTACCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I
e caeRem4.Crem_Contig0   279250  0 -  4500979 C

a score=-3235.000000
s ce10.chrX             3099507 14 + 17718866 A--TTTTCAAATA---CTC
s cb4.chrX              8149170  9 + 21540570 -------CAATTT---CAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279250 16 -  4500979 A--TTCTCAAGTT-AACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   378705 19 - 33334924 GTCTTTTCAATTAGAAATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454072 17 +  4147112 A--CTCCAAaatcaaactc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   78751 2037 +   227596 I

a score=232631.000000
s ce10.chrX             3099521 361 + 17718866 ACTTTTTTCGGATTTATTCCGTCGATTTCTCTGACTTCTCTCAAATTGAACCTGTCCTTCTTTTTGAATGTATCATCTTTCTCCCCTTTCACAAAGTATAAACGGACGGCGATGGGGTGCTCGATTGTGACTGCAAGTTATCGATTTT-----TATACAGGACAAT-------TCCAAGAAT-------------TCTTACCTGCTAAACATAGTAGTGTCTGGTTTTTCTTCTTTTTTCCATCCAACTTTGAGACATTGACTATTGCTTGAATTCTTTCATCGTCTTTCTGGAAAAGTTGCCGCTGGATTATCTTCCTGATTGCAGACA--------TTCAAATCTGAAATTGAAAATTTATATAATCA--CATTGATTAAGTAGAATAATAAAA
s cb4.chrX              8149179 365 + 21540570 ACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCggtcttttttcttgaatgtATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACT----ACAACTGTGCAG-----TATTGTAGACAatcaattctttaaaaaattaaa---------ttttacctGCCAAGCAGAGAAGCgtctgatttttcttcttctttccgtCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACA--------TTTgcttctgaaat---aatttttaatgatGA--TTTTAACGATGAATCAGTgtaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   279266 355 -  4500979 ACCTTCTTTGGATTAATACCATCAATTTCTCTCACTTCTCGGAGATTGAAACGGTCCTTCTTTTTGAATGTATCATCTTTCTCTCCTTTCACGAAATACAAACGAACAGCGATTGGGTGCTCGATAGTAACTg--aacaattattgat-----ttttttaaac----------ttaagGATTGAAAATGTGGCTTTCTTACCTGCCAAACAGAGAAGTgtctgatttttcttcttctttccatccAATTTTGATACGTTAACTATAGCTTGAATGCGTTCATCGTCTTTTTGAAAGAGTTGCCgttgtattatttttctgattgcaGACA--------TGGgcttctgaaat---tatt-------------tttcaattaaaaatcgtaatgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   378724 343 - 33334924 ACCTTCTTTGGGTTGATTCCATCGATTTCTCTGACTTCGCGTAGATTAAATCGgtcctttttcttgaaagtgtcgtccttttctcctttcaCAAAATACAAACGGACCGCGATTGGATGTTCTATTGTAACTG--AAAGACCA----------TATATTGA------------TTCATTTATTCTGACGTTTCTGTCTTACCTGCCAAGCAAAGAAGTgtctgatttttctttttcttcccatcTAATTTTGATACATTCACTATCGCTTGGATCCGTTCATCgtctttttggaaaagttgtcgttgaattatttttctgatggcAGACa--------ttaatttctgaaac---aaa------------------aaggataaataaaagagaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454089 347 +  4147112 actttctttGGGTTAATTCCATCGATTTCTCTGACCTCGCGCAAATTGAATCggtctttctttttgaacgtATCGTCCTTTTCTCCTTTTACAAAGTACAATCGGACGGCAATTGGATGCTCGATGGTTACTG-AAAAGACCA--AAT-----TATGTTAGAC----------TTGAACTATATTGAC---TTCAATTTACCTGCCAAGCAGAGAAgcgtttgatttttcttctttttcccatcCAATTTGGAGACATTCACTATTGCTTGGATTCGTTCATcgtctttttgaaacagttgccgttgaattatttttctgattgcCGACa--------tatgtttctgaaaa---aaat----------------tcagtttgaa-aaatgtgtaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   80788 366 +   227596 ACCTTCTTCGGATTGATTCCATCAATTTCACGCACTTCTCGCAAATTAAATcgatctttctttttaaaCGTGTCATCCTTTTCACCTTTCACAAAATATAGTCGAACTGCGATCGGATGCTCAATTGTCACTT-AAAAAACTAGTTATAACtgttaattaaat----------tttaaaagttata------------CACCTGCCAAGCAGAGAAGTGTCtgatgttttttcttcttcccgTCCAATTTTGAAACGTTCACAATCGCTTGAATGCGCTCATCGTCTTTTTGGAAGAGTTGTCGTTGGATTATTTTTCGTATAGCAGACATctgatattttatttttatttt---aatttaatttaatgggttattaaataaata----aatgaaa
i caeJap4.Scaffold17545 I 2037 I 15750

a score=-8361.000000
s ce10.chrX             3099882 38 + 17718866 ATTTTAAACTTAAACC----AAGCATTAAAAAAG-------AAAACAAT-----
s cb4.chrX              8149544 37 + 21540570 -----aaagacaaaat----gagCG----AAACATTCAACAAGAATAAAC----
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0   279621 21 -  4500979 -----acaagcaaaaa----g--------------------agaataaat----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   379067 36 - 33334924 -----aaccgcaataaat--gagca----aaaca-------agggtgaaacACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454436 39 +  4147112 -----aaacatagaaaactagagcat---aaaaa-------agtgcaaaacagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I

a score=-8465.000000
s ce10.chrX             3099920 46 + 17718866 AAAATCAGG------------GAATTGGAAACAGTTATGC-CCAGTAAAAACATACGGA----------
s caeRem4.Crem_Contig0   279642 29 -  4500979 ---------------------gaagtacaa---------caacagtaaaaacaaaaata----------
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold629   379103 48 - 33334924 --------GAGAATTAGTGCTAAAGGGTCAA---TTGCGC----------ACACAAGAAACGCAACAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454475 47 +  4147112 --------g-----------taaacTGCAGA---TTCCGCAAcactcaaaacgaaaaatgcgCATAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149581 40 + 21540570 I

a score=-519.000000
s ce10.chrX             3099966 5 + 17718866 GTTAT
s caeSp111.Scaffold629   379151 5 - 33334924 TTGTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454522 5 +  4147112 GGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149581 40 + 21540570 I
e caeRem4.Crem_Contig0   279671 27 -  4500979 I

a score=1679.000000
s ce10.chrX             3099971 31 + 17718866 TCTGCGTCTCTGCAGTTTTCTGT-GGTGACTA----
s cb4.chrX              8149621 35 + 21540570 TCTGTGTCTCTCCCGTTTA-TGTATATATTTCTCCC
i cb4.chrX              I 40 C 0
s caeSp111.Scaffold629   379156 30 - 33334924 TCTGTGTCTCTCCCCAACT-AGT-GGTGTATT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454527 30 +  4147112 TCTGTGTCTCCTCCTTTTG-TGT-TATCTTTC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e caeRem4.Crem_Contig0   279671 27 -  4500979 I

a score=4389.000000
s ce10.chrX             3100002 46 + 17718866 GTACACGAAAAACACGCCA---GTGGCCGGTTAGCGTGCGCGTTTCTCG
s cb4.chrX              8149656 46 + 21540570 GCGCACGCAACGCGCACCATGCAT---CGACTGCCTTGCGCGTTTCTCG
i cb4.chrX              C 0 I 2540
s caeRem4.Crem_Contig0   279698 42 -  4500979 GCGCACAAGAAATGAGTCA---GT---CAGTCGCTTGGCGCA-TTCTCG
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold629   379186 44 - 33334924 GTGCACGAGAAACGCGTCA---GCA--TGATGGGAAGACGTGTTAACCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1454557 44 +  4147112 ACGCACACATTGTGCGTCA---ACA--ATATTGGACGACCCTTTTCTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I

a score=-9185.000000
s ce10.chrX             3100048 533 + 17718866  
s caeRem4.Crem_Contig0   279740 530 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   379230 529 - 33334924  
i caeSp111.Scaffold629  C 0 I 171
s caePb3.Scfld02_0      1454601 521 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I

a score=-460.000000
s ce10.chrX             3100581 14 + 17718866 AGTCGGGATTTTGA-
s caeRem4.Crem_Contig0   280270 14 -  4500979 TGTTGGAAGATGGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1455122 15 +  4147112 AGCTGGTGATTTCAA
i caePb3.Scfld02_0      C 0 I 158
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I
e caeSp111.Scaffold629   379759 171 - 33334924 I

a score=225.000000
s ce10.chrX             3100595 7 + 17718866 TGATCTG
s caeRem4.Crem_Contig0   280284 7 -  4500979 ACATCTG
i caeRem4.Crem_Contig0  C 0 I 193
e caePb3.Scfld02_0      1455137 158 +  4147112 I
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I
e caeSp111.Scaffold629   379759 171 - 33334924 I

a score=0.000000
s ce10.chrX             3100602 620 + 17718866  
e caePb3.Scfld02_0      1455137 158 +  4147112 I
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I
e caeSp111.Scaffold629   379759 171 - 33334924 I
e caeRem4.Crem_Contig0   280291 193 -  4500979 I

a score=450.000000
s ce10.chrX             3101222 7 + 17718866 GGTAGTT
s caeRem4.Crem_Contig0   280484 7 -  4500979 GGTTGTT
i caeRem4.Crem_Contig0  I 193 C 0
e caePb3.Scfld02_0      1455137 158 +  4147112 I
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I
e caeSp111.Scaffold629   379759 171 - 33334924 I

a score=-350.000000
s ce10.chrX             3101229 27 + 17718866 CTTAC---------AATTTGACTTGGGGCGGCATTG-
s caeRem4.Crem_Contig0   280491 30 -  4500979 CTGACTGTTGCTTTGATTTGGAT-------GGAATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   379930 20 - 33334924 CTTAC---------AACTTGGTT-------GCAATG-
i caeSp111.Scaffold629  I 171 I 1
e caePb3.Scfld02_0      1455137 158 +  4147112 I
e caeJap4.Scaffold17545   81154 15750 +   227596 I
e cb4.chrX              8149702 2540 + 21540570 I

a score=910.000000
s ce10.chrX             3101256 1 + 17718866 T
s cb4.chrX              8152242 1 + 21540570 T
i cb4.chrX              I 2540 C 0
s caeRem4.Crem_Contig0   280521 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   379951 1 - 33334924 T
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1455295 1 +  4147112 T
i caePb3.Scfld02_0      I 158 C 0
e caeJap4.Scaffold17545   81154 15750 +   227596 I

a score=54291.000000
s ce10.chrX             3101257 148 + 17718866 GCTGAAAGTCAGTGTCTTAAAAACGGTCGCCGAGGGGACGTAGCTTTCCGAAGGCGAACGTTTTATGAATTTCCCGTAAATAAATGTATTTTTCATGCTCGACACAAAATCATCGTGATCTGCAGACTCCAGCTGA-----AAAAATAGTTC-T
s cb4.chrX              8152243 115 + 21540570 GGTGTATGTCAACGTCTTATACACAGTAGTTGCTCCCATGTAGCCATCTAGCGGAACACGCTTGATGTACCGACCATAGATGAAGGTGCTTTTCAAGCATGAGATCAAATCCTCG---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   280522 148 -  4500979 GGTGAATGTCAATGTCTTGTAAACAGTTGTCGGTCCATAGTAGTGATCCAGGGGGACACGTTTGATGAATTTCCCGTAAATGAACATGCTCTTCAAGTAGGAAATGAAATCTTCGTGTTCCGCTGAGTCAATCTGT-----AATAATGATTCT-
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629   379952 145 - 33334924 GCTGAAAGTCAATGTTTTGTAGACAGTTGCTGCTTCTTTGTAGGTGCTCAGTGGAACACGTTTGATgaactttccaaaaatgaaagctTGTTTCAAGCAAGAAATCAAATCTTCGTATTCAACAGAGTCGATCT-------AAAATTGGTTC--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1455296 150 +  4147112 GTTGAAAGTCAATGTTTTGTATACAGTCGTTggtccaaaataattttctagaGGAACACGTTTGATGTATTGTCCGTAAATGAAGGTGCTTTTCAGACAGGAAATGAAGTCTTCGTGCTCGAGagcatcaatctga--aaaaaagttgtttt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   96904 149 +   227596 GCCAAAAAATAGTTTCTTGTATACAGTGTATGAATCAATGTACGTTGTGCGTGGCACACGTTTAATAATCTGTCCATAGATAAAATGACTCTTCAGGCACGTCACAAGATCTTCGTGCTC---AGCTTCAAGTTGCTaaaaaaaaGCGTTTA--
i caeJap4.Scaffold17545 I 15750 C 0

a score=-10367.000000
s ce10.chrX             3101405 33 + 17718866 GCTTTAAAAACTGCA--AATTTAGAACTCTATCTA
s cb4.chrX              8152358 15 + 21540570 -----------------AATTCGGAAGCA---TCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   380097 31 - 33334924 ATT----TAACTTCAGCGATGGAGTTGAATCTCTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1455446 32 +  4147112 tctgcCATGACTTTTGTGATTCTGATAAA---CAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   97053 26 +   227596 ---ATTATCAGTGgcgcaaaacaaaacaa------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   280670 29 -  4500979 I

a score=59424.000000
s ce10.chrX             3101438 110 + 17718866 ACCGTTGCCAATAAGTCGCTTTTAGCCTGATTGTAAACCACTAAGCCAATGCTACCCGACATAACTGCCTGCAGTTCACACTTTGCGTACGTGTAATATGCGGTTGTCAT
s cb4.chrX              8152373 110 + 21540570 GCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   280699 110 -  4500979 ACCGTAGTGAGCAGATCAGTTTTAGCCTGGTTGTAAATAACCAGACCAACATTCATAGGTGAGATTGCTTGAAGCTCACACTTTGCAAGCATGTAGTATGATGCTGTCAT
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold629   380128 110 - 33334924 ACCGTGGTCAATAAATCCGTTTTGGCTTGGTTGTACAAAACCAGACCAACAGTTCCAACCATCACAGCTTGCAATTCACATTTTGCATACAAGTAATAACATGTCGTCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1455478 110 +  4147112 ACCGTAGTCAGCAAATCTGTTTTGGCTTGGTTGTACACAACCAATCCAACTTGTCCGGTTGTGATCGCTTGTAGTTCACATCTAGCCAGCAGATAGTAAGCCGCTGTCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   97079 110 +   227596 acccTAGACTTTAGCTTTGTTCTTGCCTGGTGATACTTAACGAGTCCAACACTTCCAGTCAGAATCGCCTGCACTTCGCATTTGGCATATGCGAAATATGCCGCTTTAAT
i caeJap4.Scaffold17545 C 0 I 738

a score=12007.000000
s ce10.chrX             3101548 179 + 17718866 CACTGTTTGTTTGTCTCTGGTGAACAAGAATTCCTTTACAAAATCACTGGAACGGCGTGTGATGGCTTGCATCAGAAACGGGCCAGATGGTATTC---GAGCATTTTGCATTGACTCACACTGC-A----AAAAAAAATGTATTTTAAGCGACCAATGTGTA----CGTTTTTTTTCTTTTTTTTTC--TCTC
s cb4.chrX              8152483 165 + 21540570 GATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGC-A----AGATTAA------TGTAAAAAATCACGTTTTA----CCTTTG-----------AGTC--ACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   280809 162 -  4500979 GACGGTCTTCTTGCCACGACTGTACAAAAATTCCTTGACAAAGTCTGTTGAGCGTCGGGCTAACGCCTGCATCATATATGGTCCCGGTGGTCTTCGGGTAAAGTCA------TCTCCCAACTGA-AATTCATAATAA------TCAAAACAACTATTGTTTA----CGTTT--------------TCAAACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   380238 165 - 33334924 GATCGTCTGTTTACCACGCGTGTGCAAGAAGTCTTTCACAAAACTAGATGAGCGTCGCGTGATTGCCTGCATCATCATTGGCCCGGGTGACTTCATCGGATAATCGTAAACTGCATCGCACtgc-a----aaaatag--------aattcaaaTAGAACTGG----GTTTTA---------CAATTC--TCTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1455588 170 +  4147112 GACAGTCTGTTTCCCGCGTGAATGCAGAAAATCTTTTACAAACTTAGTAGACCGGTTTGCAATACTGTGCATTGACAACACACCAGGTGGTCTCATTGGATCCTCCCAAATATCATCAcactgcaa----aaaataa--------aagttaattTTAGTTTGTAATGTTCTG---------AAATGT--TCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   97189 738 +   227596 I

a score=38548.000000
s ce10.chrX             3101727 293 + 17718866 ACCACCGGCATCTCTCCACACCCGTGAGTCAGCATTGTGTGGTCACTGGCTTGTTGTAGAGTGTCAAAGTGAACATTACATTCGGAACAGAACCAATTAAACGACACGGGATGATTTAGGGTCTCGTGATGCTCCAAAGAAAATTGTGATACAAAATTTTCAGAACACGTTCCACAACGAAGCATTGCAAACTGACGGGATCTTGTTTTGGG----CTCA--GTT--------------------------------------------------------------------TTTTGC-------------------TCTTTGAGTTC------C-------------------------GTTTGAGGACGGTTCTC---ATT-----------GAGCCGACGC--------------------------------TTTTGCAAAATTTG-------------------CAATTTCGAAGG-------
s cb4.chrX              8152648 394 + 21540570 ACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCAT---CCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGG----TCTA--ACTG---------GCGCTTCCATT---------------TTGAG------TGTTGG---CATTTCCGTGACTTTTGG-------------------TGGTGTTGGTT------CTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATC--GAGC---------TGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATA--CCAAGGAT--------CATCCTTGGATA-------
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   280971 338 -  4500979 ACCAAAGGCATCTGCCCATCAGAATGAGTCATCATTGAATGATCACTTGCTTGCTGCAAAGTGTCGTAGCGAATGTTGCATTCCGAGCAAAACCAATTGAAGTAGTGTTGATGACATTTGGTTTCATGATATTCCAATGCAAACTGAGAAACGAAATCTTGAGAACAC---GAACAGCGCAGCATTGCATACTGACGAGTTCTAGTTCTCGG----TTCA--GTCG---------GTTTTTCAAT------------------------------------------------TACTGG-------------------TAGTGGGGGCTGCAGAACGGCAGGTGATAAATCCGGATAAGGCGGCACTGGCATAAAATTAGGATC---------CAAGTAGGGGAT--------------------------------GTTCTCATCTAGAcg------------------cagtttcaaaaa-------
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold629   380403 338 - 33334924 ACCACGGGCATTTGTCCACCGTCATGCGTCATCATAGTGTGGTCACTGGCCTGCTGCAAAGTATCGAACATGACATTGCATTCTGAgcagaagaaattgaaaagctCTGGATGCTCTTTGGTTTCGTGTTGTTCTAATGCaaattgagaaacaaaatcTTGATTACAA---GAGCAACGAAGCATTGCAAACTGACGGGTCTTTGTTGTCTT----TTCT---------------------------------------------------------------CCTGCACTGGTCTCAATCTCTAGTTCAGAGCTCTCTGTTGAAACCT------CTTTCGATGGAACCGCTGGTGTTGGTTTTCGAGAGAGGTTCTC---ATC-----------AAGACGTCGT--------------------------------TTCTTGATGATGAC-------------------CGATTTGGG----------
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0      1455758 347 +  4147112 ACCACAGGCATCTGTTCCGGACCATGAGTTAGGAGAGTATGGTCGCTGGCCTGGAGCAATGTATCAAAACGAATATCACACTCTGAGCAGAACCAATTGAAGAAATGCGAATGGTGTTTCGTTTCATGATGCTCTAAAGCAAACTGGGACACAAAGTCTTCAGTGCAA---CAGCATCGAAGCATTGCAAACTGCcgagtttttgttgttttcacaTTCTTAGTTG---------GTGATGCAAC---------------------------GGTAGA---AACGTTCACTGATCCCAA---------CGGAGAT---TGTGGGAAACT------A-------GGTAAAGATAATTGAGGTTTCGGAGGAGGGTTTTC---AAC-----------AGAACGAGGT--------------------------------TTTCGAATGTAGAC-------------------AGGCTTCAG----------
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17545   97927 396 +   227596 ACCACTGGCATTTGTCCACTTCCATGAGCCAACATCGAGTGCTCACTAGCCTGCTTCAACGTCTCAAACTCAAAGTCGCACTCTTCACAGTACCACGAAAACAGCTCCGGATGTATTTTTACCTCGTGGAACTCCAACGCAAACTCGGAGACAAACTGTTCACAGCAGTTGCCACACTGAATCATCGGAAACTGTCGCGATCCCATTCCCAT----GTTT--GATGCATCCGATTGTGTAGAAATTAAAATGTTTGCCGCGTTGGAAGCTGTTGTTGGGATCATTTTCACGG----TGG-------------------TCTTGTAACCC-----------------------------GGTGGATGAGGGAAGAAATT---TTCGTTCGGGCTCACTGGAGGAGC--------------------------------TTTTGGATTGACGCGAGCCGGGAGTGTGGCTGGGAGCTCTGGAACATCCACG
i caeJap4.Scaffold17545 I 738 C 0

a score=-3988.000000
s ce10.chrX             3102020 11 + 17718866 ---AATAGGCGTCT
s cb4.chrX              8153061 11 + 21540570 ---TTTGTCCTCCT
i cb4.chrX              I 19 I 3
s caeRem4.Crem_Contig0   281327 11 -  4500979 ---GACAGGAGGCT
i caeRem4.Crem_Contig0  I 18 I 3
s caeSp111.Scaffold629   380747 11 - 33334924 ---TTCTGATGGTT
i caeSp111.Scaffold629  I 6 C 0
s caeJap4.Scaffold17545   98323 10 +   227596 CTTATCGGAT----
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1456105 23 +  4147112 I

a score=43010.000000
s ce10.chrX             3102031 262 + 17718866 CCTCCTGTGTGAAATAGTTCTTAATACCCGCGAAAAGTTCTTGGAAAACGGTTTCCAATGGTTCAGGCTCGAGTCCACTGATTAGTGGATCGTAGCTA---CTGTGCTCTTCACCAAACATGTTCCGTTTCTCACCCTT------AAAGTAGACAGT----ATTGAT--------TTG--------------AGAAATAATCG-AGCGGTTGGAATA-AAA-------------AGAGAATGGAAGG---TTAGATGGGGGAACGCG------AGGACGG--------------------GGAAATGCAGCGCGAGACCGAAAGAAAAAAA-GATGGAGAAA
s cb4.chrX              8153075 270 + 21540570 CATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGGCTCCAGTCCACTAATGAATGGATCATACCCCGGTCTGAGGTCCTCCATGAACA-TGATCACCCGGAATACTTCCTACAAAAAACTAT-------ATTGGT--------TGGCaattaccgaaaaaaaaaacagtagtGGTGGTCAGAATA-ACGCCTG---------GGGGAGGGGAGCG---------AGAGAAAAATGGCGCGTAGAG------------------------------------Ggggaatgcaaaaaaaac-ggGGACAACG
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   281341 248 -  4500979 CAtc---attcaaatagtttttaattCCTGAGAATATCTCTTGGAATACTGTATCAAATGATTCCGGCTCCAATCCACTGATCAGTGGATCGTATTCAGTTCTGACCTCTTCGTTGAACATTGCCCGTTTGTAACCCCTTC----AAAATCTACAGA----ATTGAT--------TTG--------------GAAAATAGAAGTGGTGGtcagaata-atgtatg---------agagATGGGAGGG--------CAGGAAACAATG------AGAA------------------------------------GATAAAAACTAAGACAAA-GGCAGAGAAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   380758 253 - 33334924 CATCATGTGTCATGTAGTTCTTGACTCCAGAAAAGATCTCTTGAAAAACCGTTTCAAATGGTTCGGGTTCCAATCCACTGATCAAAGGGTCGTAGTCG---CTGCCCTCTTCTCCAAACATCGTCCGATCGTAGCCCT------------CAACACT----ATTGAT--------TAG--------------AGAAACGAAATGGTTgcttcaaatgaaaaacgg---------agagaaaagagagattatagatggagaggaaga------aaaaccg-------------------------------atgaaagagaaaaagagaa--tgggtGGGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1456128 260 +  4147112 CTTCCGGGGTTATGTAGTGCTTTATTCCGGAGAATAGTTGCAGGAATACGGTATCCAAAGGTTCAGGTTCTAATCCGCTGATCAACGGATCATAGGTG---CTAGCCTCCTCCTCAAACATCAGCCGATTTTGTTCCCT------CAAAATAACAGT----GTTGAT--------TAg--------------tggaaggaaaagaagattcgaaatg-aaaattg---------agagacaagagagtgtatagatagaaagaaatg------agaatgg-------------------------------ttgaagagaaaaaagagaaagtgaggagaaa
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold17545   98333 302 +   227596 CTTCTTGCGCAAAATAGGTTTTGATTCCAGAGAAGAGCTCCTGGAACACTGTGTCGAAAGGCTCCGGCTCCAATCCACTGATTAGGGGATCGTAATCG---TTCTTCTCCTCCTCGAACAT-----ATTTGTAACCCTA------AAAAGTTGGAATTGTACTTGATATTTAGGATAG--------------GAGAACAAGTAAAGGGACAGTAATA-ATTAATGGATCTCAATGAGCAAATGAGGG----CAGATGAGAGCAAGCA------AAGAAGGCGTCGCAAAGAGGTGGCCGGCGGAACGCAGAAGGCCGcggagagagagaaa-gagcgagaga
i caeJap4.Scaffold17545 C 0 I 45

a score=3383.000000
s ce10.chrX             3102293 12 + 17718866 AAGTACAAGTGA
s cb4.chrX              8153345 12 + 21540570 AAGAACAGATGA
i cb4.chrX              C 0 I 2713
s caeRem4.Crem_Contig0   281589 12 -  4500979 AAGTGCGGATGT
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   381011 12 - 33334924 GTGTAGGAATGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1456388 12 +  4147112 aagtaaaaataa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545   98635 45 +   227596 I

a score=5364.000000
s ce10.chrX             3102305 162 + 17718866 GAGGGTTCCGCAATGAGCAA-------AACCGT------GTGATTTAT--CTGGGAATTACAATGG----------CAAAAAACACGAGATATTGT-----------TTAAAGTATGATTCAAAGTGGAAACGTTATCAGTCAATAAACATTATTGAAGATAAGAGTGAAAGTGCAAAGCAATTAATAATCCTTATTT
s caeRem4.Crem_Contig0   281611 138 -  4500979 TAAAACTGAGCTGTGAGCAA--GCCAACTCAATGATGAAGCGTTTTTCCATTAGACACAATCAA------------GATGGAACACAAGGTCATGT-----------GTAAAGATTGATTCATCTCTTAAAC-TTATCAGTTGATAAATA-AATTGGAAA-GAGTG--------------------------------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629   381023 160 - 33334924 ---AACTT-GCAGTGAGCAAGTGTGTGGTCCGTTGTGAAACATTGTGT--TCAGAGTTCATCATTGTgtttggagagaaagaacACGAGACTTAAA-----------GTGAAGGTTGATTCACCCTTTTGTC-TTATCAGTTGATAAATA-AATTGTAAA-AAGTGCGAATGTG------------------TTATTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1456400 165 +  4147112 ---aactt-gCTGAGAGCAA--CAGTGGTCCGTAGTATAGCCCTTTGT--TCGAAGGCAATCGGAGTGATTG----AAAAGAACACACGGGCTGAATGTGTATAAGTGTAAAGGTTGATTCATTTCGACTTC-TTATCAATTGATaaata-aattgagaa-aagtgcGAGAGTG------------------TTATTT
i caePb3.Scfld02_0      C 0 I 97
e caeJap4.Scaffold17545   98635  45 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=-9271.000000
s ce10.chrX             3102467 138 + 17718866 GCGACATAAACAAGGACTTTTTCAACACCAACAATGCATTGA--AATAGT--ATTATGT-----AAGAAAAGCTCTAACTAGAGCTGTGTTGCTTGaaaaatta-taaaattatattaataaCCTTACAATACTGAAACAAAGC---TAAA-----------------
s caeRem4.Crem_Contig0   281749 120 -  4500979 -CAGCATTA--------TCGTTCGACGCAGATACGATAGTGA--AGTGGT---TTCTGT--------------------TGGAA-AGTGTTAGCAAAAAGAGGAATGAAAACATAAACATGTTTCTAGGAGA-TGTGATGAAACACATGCACTTTT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   381183 109 - 33334924 -----------------------GATTTAGAAACACTGACTATCAGTTGTTGATTCTAcatttcatgaaaa--------tagaa-tatgtttttgaaaagccTACTG--------------------------TGTTACGAAACAT-TATACTTTTTGAGAACATGCT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1456565  97 +  4147112 I
e caeJap4.Scaffold17545   98635  45 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=-5237.000000
s ce10.chrX             3102605 361 + 17718866 TGAAAGCTATGCAATATATTTTTCATGAAAAAAAAGTTTCGTAACATATTCGTATACATTTCGGA----AAATTTTGCAAAGTCTTTCCAGCATTGA----TTCTTCCACACTTTCTACATTTT--CTACACATTCATAACAAA--TGT---GACGGGGAGTGAGGCATTGAAA-AAATGAA---ATGGAATAGAATATTAGATGATGTGTCTAGATGATGAGGTGTTTCCACAAAACGAGATGA-----ACGTATGAGTGTC---TCTCCCCCCCCCCCCCCCCCCCAACCAACTCG-ACGGGGATGGT------CAGTGCTCTC-TCATCGA-------------------CTTTTGTGGTACGAGCCATTCAACGCGTGTGCTACTATCTCACTGTGGCCCACACGACGGCG
s caeRem4.Crem_Contig0   281869 338 -  4500979 CGAA---TTTG----ATACACT------ATGAAGGGCTTCAGAG------GaatgaaaaactagaaaatgaaGACTACTAACTCTTTGAAGCTTTCTCAACACTCTCATTTAGATATTGCTTCC--CTACGTATTCATAATGAAGCTTA---------------------GAGG-ATGTGTGAATAACATACAGAATGTTGGATGATGT-----TGAGACGAGGTG-AACGACAGAACGAGACTACGACTACTGAGCAgaacc---tctctctctctctttttt----------ttct-gcagtGATGATGGAAAGTAGTGCTCTCTTTCTCTAGTGCGCCTCTCTACTACATTTCTT---GTATGACCTATTCAAAGCGTGTG---CTATCTCACTTCGGTCCA--------CG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   381292 294 - 33334924 ------------------CTTT------GCAAAAGGATTCAAAG------CGAGCACACAAAAGA------------------TTTCCTAGGTTTGC----TTCTCCATCTTCAGATTGCTTTT--CTACGCGCTTCTAATAAA--TAAAGcgagagaaatagaa-----gagaaaagtgag---aacACATGGAATGTTAGAT----------TAAGATGAGGTG-ACCAGC-----------------ACCAAGAAGAGCCAGCCTTCTCTGTCTCTCGCTCGTC---CTAGCCCG-ACGGAGATGAC------TAGTGCTCTCCTCATCTACTCTGC----CTAATCCAACTCCTATGGCGAG----GGCCAACGCGTGTG---CTATCTTAGTATGGGCCA--------TG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1456662 287 +  4147112 TGAA-----------AGGTTTC------GAGAAAGGGTC---AG------AGATTAAGAACTGGA------------------TTTGCATGCTTTGCTG--TGCTTCATTTCATGATTggtttttccttctcatttctaataaa--tta---gaaaggaagagaag----gaggaatGTGTG---AACATAGTGAATGCTAGATTAGCC-----TAAGATGAGGTT-ACTAG-------------------------AGAGCC-GCTCACTCTCTTCCTCACAC----------CCCGCGCGGGGACGGC------TGGTACTCTCATCTCCTA-----------TACTCCAACTCCTTCAGCCCTACCCGTCTAATGCGTGTT---CTATCTCGCAAAGGGCCA--------CG
i caePb3.Scfld02_0      I 97 C 0
e caeJap4.Scaffold17545   98635  45 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=80984.000000
s ce10.chrX             3102966 210 + 17718866 GCAGTTATCG--------CCAA-AGCCGTTCATGTCAAA--CCAATTGTGTGC-----------GGTGGCCAATGCGGCCCTATCGATCGA---CCCAACAAACAGAC---GGCGAGGAGTAGTGTGAGC--TGCTGCGTTGGCAACGCG-G----AG-----AGA-----------ACCGTTCAGCCT----AGTGGTCAGCAGAGAAAAAAAGTAGATGAGACTTGACGC-TTGAGGCGAACAATTTGCAAGACGCA-AGGCAAT
s caeRem4.Crem_Contig0   282207 207 -  4500979 TCGGTTATCG--------CCTT-CGCCGTTCATCTCAAA--ACAATCGTGTGC-----------GGCGGACATTTCGGCCCGATCGATCGA---CCCAGCaaatagag--------gaaaaagagCGAGCTATGCCGTGTTGGCAACGCGTG----AG-----AGA-----------ACCGTTCAATG-----GGTGGTCagcagagaaaaaaagtagatgaGACTTGACGC-TCAAGGCGAACAATTCACAAGACAga-gaataat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   381586 226 - 33334924 CCGGTTATCG--------CCGACCGCCGTTCATGTCAAAACACAATTGTGAGCG--------TCGTCGGCCATCGCTGCC-TATCGATCGA---CCCaacaaatagaagaagagagggagagaagtGAGC--TGCTGCGTTGGCAACGCG-G----AGAGGAAAGA-----------ACCGTTCTGAGAGGT-GGTAGCcagcagag-aaaaaagtagatgAGACTTGACGC-TCTACGCGAACAATTCACAAGACACAGGGgtaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1456949 208 +  4147112 TTGGTTATCT--------CCAA-CGCCGTTTATGTCAAA--ACAATCGTGAGCG----------GGAGGCCATCGCAGTTGTATTGATCGA---CCCAACAAATAGAA---------GAGAGAAGTGAGC--TGCTGCGTTGGCAACGCG-G----AG-----AGA-----------ACCGTTCTGTGACG--ACTGgtcaacagagaaaaaaagcgaatgaGACTTACCACAACAGCCCGAACAAATTGCAAGACACA-Gagtaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545   98680 244 +   227596 GCGGTTATCGAGTATTTACGCA-AGCCGTTCATGTCAAAA-ACAAATGCGTGCGGGGTGGCGGTGGCGGCCAGCGCGTT--TATCGATCGGGTCCCCGACAAACAGAC---------GAGAGAAATGAGC--TGGCGCGTTGGCAACGCG-GATGAAG-----AGACCGACCGACCGACCGTCCGCCAGTGTGGTTGGTAGtcagagaaaaaaagtagaTGAGAATTGACGC-TCGAGGCAAACAATTTCAAACACCCA-GGGTCAT
i caeJap4.Scaffold17545 I 45 I 2131
e cb4.chrX              8153357 2713 + 21540570 I

a score=2352.000000
s ce10.chrX             3103176 11 + 17718866 GAGGGAAAAAA-
s caeRem4.Crem_Contig0   282414 12 -  4500979 tgagaaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   381812 11 - 33334924 tgagaaaaagg-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1457157 11 +  4147112 tgagaaaaaaa-
i caePb3.Scfld02_0      C 0 I 861
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=152.000000
s ce10.chrX             3103187 3 + 17718866 TGA
s caeRem4.Crem_Contig0   282426 3 -  4500979 tgg
i caeRem4.Crem_Contig0  C 0 I 59
s caeSp111.Scaffold629   381823 3 - 33334924 tCA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=-1048.000000
s ce10.chrX             3103190 77 + 17718866 GGGAAATACAAAGAAAAAAACGAGATTTCGCATATTT---TCAATATGAACATTTATTGAAACATTTGATACATTCACAC
s caeSp111.Scaffold629   381826 60 - 33334924 ---------ATTGAGACGAGTGGAGATTCTTATatttatttcgaaagaaaaa------gaaa-----gaaagagcaTTAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I
e caeRem4.Crem_Contig0   282429 59 -  4500979 I

a score=-25581.000000
s ce10.chrX             3103267 622 + 17718866  
s caeRem4.Crem_Contig0   282488 471 -  4500979  
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold629   381886 464 - 33334924  
i caeSp111.Scaffold629  C 0 I 69
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=-103.000000
s ce10.chrX             3103889 51 + 17718866 GCCGCATCAGGTGCAACCGGTGGGTTTCTTCTGAAATTTATCTTGATTAGA
s caeRem4.Crem_Contig0   282959 25 -  4500979 ---------------------GGGAATCTTTT-----TCTCCTTGATTAAG
i caeRem4.Crem_Contig0  C 0 I 173
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I
e caeSp111.Scaffold629   382350 69 - 33334924 I

a score=0.000000
s ce10.chrX             3103940 75 + 17718866 ATATTGGTCAGTGTTAATGAGAATATAATTGAATTGACACATCAcacgtgctaccaggctgtcccattatggttt
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I
e caeSp111.Scaffold629   382350 69 - 33334924 I
e caeRem4.Crem_Contig0   282984 173 -  4500979 I

a score=-2966.000000
s ce10.chrX             3104015 173 + 17718866 gacctacaaaaaatgcgggattttttttcgcctaaaaaaattgacgtcagcacaatcttaagcatgcgaaatcagttgagaactctgtgtctcttcttccgcattttttgaagatcttcgtagatcaagccggaatgagacactctgacaccacgtgAACGTGACTTGACCAA
s caeSp111.Scaffold629   382419  63 - 33334924 GCCAGACACATGGTGTGGGAACATGGTTCTCCTGAAA----------------------------------------------------------------------TTCAAACTGTTTCTag---------------------------------gaatttgaat-------
i caeSp111.Scaffold629  I 69 C 0
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I
e caeRem4.Crem_Contig0   282984 173 -  4500979 I

a score=-1913.000000
s ce10.chrX             3104188 71 + 17718866 GTGATTTTTA--------------AAAAAACATACGCTAAATATCGATTTTGCATTTCCTCCGAGAAAAAATCGGGCTCATAGCA
s caeRem4.Crem_Contig0   283157 73 -  4500979 GtattcattaaaattaaactGCCTAAAATACTCACTTGTCTTCTTCAGGTTCAAACATTTCC------------GGTTCCGAGAA
i caeRem4.Crem_Contig0  I 173 C 0
s caeSp111.Scaffold629   382482 49 - 33334924 ------------------------aaaatacaTACAAGAGTGTTTGAGCctccatttcttcc------------aattcttgTCC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e caeJap4.Scaffold17545   98924 2131 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=-316.000000
s ce10.chrX             3104259 21 + 17718866 ACGA--ATGACTT-TGTACATTGG
s caeRem4.Crem_Contig0   283230 21 -  4500979 ATGA--AGAACTT-TATCAGCCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   382531 24 - 33334924 ATGACCATAACTTATAGTGTCTTG
i caeSp111.Scaffold629  C 0 I 3
s caeJap4.Scaffold17545  101055 21 +   227596 ACGT--ATGATTT-TTTCCGGTGC
i caeJap4.Scaffold17545 I 2131 C 0
e caePb3.Scfld02_0      1457168 861 +  4147112 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=7248.000000
s ce10.chrX             3104280 103 + 17718866 AACGGAGTTGATGGGTAGGCGGTGAACTGACGGGCCATAAATATAAGCTTGCTTGAGCAGGTCGTTGATGGAAGCTGATTCGTCGACACAAACTTT------GCTA--GCA
s caeRem4.Crem_Contig0   283251  89 -  4500979 CATGCAGTCAACACGAAGACGACTGATGAATGGTCCGTAGATGTAGGTTATTTTGAGCAGATCGTTAATTGTGGCAGTAT---CA-----------------GCTG--GCG
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold629   382558  86 - 33334924 GATTGACTCCACAGGAACACGGCAAATTGATTTCCCGTAGATATACTCTTCCTTCAACAATTGATTGAGTGTTGCTGTTT-----------------------CTT--GTA
i caeSp111.Scaffold629  I 3 I 3
s caePb3.Scfld02_0      1458029  94 +  4147112 aaCAGATTGGATTGGAACGCGGTAAACGTCCTCCCCATAAATATACTTTTTGTTGAGCATCTCATTCAGATTAACTGTTTGGACG-----------------GCTTCAGTA
i caePb3.Scfld02_0      I 861 I 3
s caeJap4.Scaffold17545  101076 106 +   227596 CACAGAGTTAATTGACATACGGACGATAGATGGTCCGTAGATGTACTGTTGTTTGAGCAAGTCATTAATAGACGCAGAGTCTTCAATGCCCACTTTTTTACAGATT-----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8153357 2713 + 21540570 I

a score=65.000000
s ce10.chrX             3104383 10 + 17718866 GAAGCATTAG-
s caeSp111.Scaffold629   382647 10 - 33334924 GAGGGTCTGG-
i caeSp111.Scaffold629  I 3 I 14
s caePb3.Scfld02_0      1458126 10 +  4147112 AAAGTCTTGG-
i caePb3.Scfld02_0      I 3 I 24
s caeJap4.Scaffold17545  101182 11 +   227596 GAAGAATCGAG
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8153357 2713 + 21540570 I
e caeRem4.Crem_Contig0   283340 33 -  4500979 I

a score=-1930.000000
s ce10.chrX             3104393 22 + 17718866 TAACT--CCACTTTGA---CGCGAACC
s caeSp111.Scaffold629   382671 11 - 33334924 CA----------TTGA---AAtga---
i caeSp111.Scaffold629  I 14 C 0
s caeJap4.Scaffold17545  101193 24 +   227596 CAAATTCCCACTTTGATTGAGCAA---
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1458136 24 +  4147112 I
e cb4.chrX              8153357 2713 + 21540570 I
e caeRem4.Crem_Contig0   283340 33 -  4500979 I

a score=-2761.000000
s ce10.chrX             3104415 13 + 17718866 CACTGCTC-GCTGt---
s caeRem4.Crem_Contig0   283373 10 -  4500979 CATTG----ATTgc---
i caeRem4.Crem_Contig0  I 33 I 3
s caeSp111.Scaffold629   382682  5 - 33334924 ---------gtttt---
i caeSp111.Scaffold629  C 0 I 4
s caeJap4.Scaffold17545  101217 12 +   227596 -----TTctgttttctg
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1458136 24 +  4147112 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=560.000000
s ce10.chrX             3104428 18 + 17718866 aaaaattaaaaattaaat
s caeSp111.Scaffold629   382691  8 - 33334924 -aaaatt---------tt
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1458160 14 +  4147112 gaaaatt----actgATT
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17545  101229 17 +   227596 -aaaacttaAATTTAAGT
i caeJap4.Scaffold17545 C 0 I 846
e cb4.chrX              8153357 2713 + 21540570 I
e caeRem4.Crem_Contig0   283383  3 -  4500979 I

a score=-5194.000000
s ce10.chrX             3104446 44 + 17718866 tatgtaaaaattaaaaatta---aatGTAACACTAACGT-----------------TTGCTAAT
s caeRem4.Crem_Contig0   283386 61 -  4500979 ---aaataaaacaaaaaatattttttatcacGCAAATGAGATCAAGCTCACTTTTGCTGCAGAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   382699 49 - 33334924 caagatgaGCTTGAAAAAGATTAAGCAACTTACAAATGG---------------CGGAGGCGAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458174 48 +  4147112 CATTTATAACCCGTAAGTTACT-GGTAACTTACAAATGA---------------CAACGGAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  101246 846 +   227596 I
e cb4.chrX              8153357 2713 + 21540570 I

a score=10594.000000
s ce10.chrX             3104490 237 + 17718866 GGGTTGAAGAGCACTTTGGCCTCCTTTTTGATAGTCTCATTGTCCTTCGTTGTA---CCGGTCAACTTGCCAGATTGAGCAAGATGGCTGCTCACAAAGCTCCATATCATTCCTGATATACGACGCTGTGA------GGATTTTTTCCCGTAGTCTGATAGTG-CACCGTTTCCGAATATGGCATTATCCAGCTGGAAAC---------AAATAATTTGAATGTTATAAAAATCTGGT----CAAAGTGAAAAAA--TATTT
s caeRem4.Crem_Contig0   283447 222 -  4500979 GAATGAAACAATGCTCTTGCATGTAGCTTGATAGTTTCCCTATCTTCAACTGCAGTTCCTGTgatttttccggttttctgaAGATAACTGCTCAGAAAACTCCAGACCATTCCAGAAATACGACGATTTGCGTTTCTCAGATGAGATTCA----TTGTTCTgg---tcatttccaaaaatggcATTGTTCATCTGAAATATCG------GAATGACTT-------------AT---------TATAATTAAAGTAAA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   382748 227 - 33334924 GGGCGATAAAGTTTTTTGGCGTGTAGTTTGACAATATCATGATCAGATTGGGACAAGCCAGTCAATAACCCGAGTTCAGCAAGATGTTTGCTCAAGAAGCTACAGATCATTCCAGAAATGCGTCTCTGAGA------ggattttttatca----tttatATTGATCCCGTGTCCAACGATACTTTTGTTATACTGAAATAATATTgaatatataatttt-------tagagaC-----------CAATGATCATA-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458222 221 +  4147112 GGGCGGTCTAGCTTTTTGGAATACTCTTTGATCAAGTCGTGATCCTTTCTGGGATTTCCGGTCAGCAGTCCCAGCTTGGCCAAGTGCTTGTTCAAGAAGCTGAATATCATACCAGAAATACGTCGTTGAACATTCCTGGGATGTGTAT------TTTCTAGTG----CGTTTCCGATGATTGACTTATCATACTGCAAtaa--------acaacatttt-------taaaaat---------tataagTACAGGA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  102092 229 +   227596 GGATTGAATAATGCTTTAACTTCTTTCTTCACAATCTCATTGTCTTCCCGTGTT---CCGCTCAATTTTCCAGCTTGAGCCAAATGATTGCTCAAAAAGCTCCAAATCATTCCGGAAATTCGGCGTTGCGA------ACCTTTTTTCCCTCTTTCTGTTATAT-CCCCATTACCACAAATCGAGCTGTCTAGCTGGAAAAA--------AGATACTGTA------ATAGAGGCATATTCGCCTTAAATAACAA---------
i caeJap4.Scaffold17545 I 846 C 0
e cb4.chrX              8153357 2713 + 21540570 I

a score=68813.000000
s ce10.chrX             3104727 206 + 17718866 CTAACCAATGGAACAGTTTCTTTTCTATGTTCAGTTACGAGATGCTTGTTTATTAACCCGATTGTT---GCAAAAATA---TCTGCACAAATTGTGCATTTGAATACAAATGCTTGAGGATGTCTTTCAACTTCATGGAATTCCAACGCCAATTGTGTGGTGAATGAGCCTTGGCACATTGTACATTTGATGTGATTGGACGCTACATCTCG
s cb4.chrX              8156070 212 + 21540570 CTCACCAATGGCATTTGGTCGACGTTGTGAACCGCGACAAGATGCTTGCTCATAATATCAACGGTTCCAAAATACATTTTGTCTTCGCAAAGGAGACATTCATATGCAAAAAGCTCCGGGTGTCGCTCACATTCGTGGAACTCAATGGTCAATTGATTGGCGAACGCTGTCTCGCAAAACTTGCATTTGACTCGGTTGGATTGAATATCGCG
i cb4.chrX              I 2713 I 1946
s caeRem4.Crem_Contig0   283669 205 -  4500979 -TTACCAATGGTGCTGCATCTGTTTTATGATGTCCGACAAGATGTTTGCTTGCTACTTGAATAGTC---GAATAAATC---TCATCACAGAGAGTGCATCTGAATGCAAACACGTAAGGGTGTCTTTCGACTTCGTGGAATTCTAAAGCCAGTTTTGTGGTGAATGCCTGTTTGCAATAATTGCATTTGATGAAATTAGATGCAATATCTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   382975 206 - 33334924 CATACCAATGGGATAATTGGTTTGTTATGCCTCTTGACAATGTGAACGCTTGCGAATGAGAGCGTT---GCAAACGCT---TCATCACAGATAAGGCATTTGAATGCGTAAACACaacaatgtttttcaacttcatGAAATTCCAAAGCCAATTTAGTGCTGAATGATGCATTGCACATGTTGCATCTGATATGATTGGATGCAGTGTCTCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458443 206 +  4147112 TTTACCATTGGTATGCATGGTAGTTGGTGCATAGTAGTGAGATGATCACTAGCGCATCTAAGAGTT---GCAAACACA---TCGGTACACTTAGCACATTTGAATGCGTATACTCCGGAATGCCTTTCAACCTCATGGAATTCCAAACTCAATCTATTGTTAAATGTGGAACTGCACATATTGCACTTAACCAGGTTGGATTTTGTGTCCCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  102321 206 +   227596 CTCACCAGTGGAATTGTGTCTTTCCTGTGAACGGCGATAATGTGCTTGTTGGCCTCGGCAATATTC---GCGTAAATG---TTCGGACAGTGACGACATTGAAATGCAAACGCATTCGTGTGCCTTTCGACTTCATGAAATTCCAGAGCCAGCTGAGAAGTGAAAGCGCTGTGGCATTGTAGACAACGAATTTGGTTGGATGGGTGGTCCCT
i caeJap4.Scaffold17545 C 0 C 0

a score=7110.000000
s ce10.chrX             3104933 26 + 17718866 TGGAACTATTGACGACATTTCTGGAA
s caeRem4.Crem_Contig0   283874 26 -  4500979 TGGAACAAATGttgacatttctgaaa
i caeRem4.Crem_Contig0  C 0 I 135
s caeSp111.Scaffold629   383181 26 - 33334924 TGGAACAATATCCGACATCGCTGAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458649 26 +  4147112 TTTTACGAGTGAAGCCatgcctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  102527 26 +   227596 GGGTATAAGAACAGagattcctgaaa
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8156282 1946 + 21540570 I

a score=631.000000
s ce10.chrX             3104959 5 + 17718866 AAAAA
s caeSp111.Scaffold629   383207 5 - 33334924 AGTTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458675 5 +  4147112 aatga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  102553 5 +   227596 aaaaa
i caeJap4.Scaffold17545 C 0 I 652
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   283900 135 -  4500979 I

a score=-2301.000000
s ce10.chrX             3104964 13 + 17718866 AA-CAAATGAACGT------
s caeSp111.Scaffold629   383212 14 - 33334924 ATATTAGAGAACAT------
i caeSp111.Scaffold629  C 0 I 47
s caePb3.Scfld02_0      1458680 12 +  4147112 at--------tcattatTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   283900 135 -  4500979 I

a score=136.000000
s ce10.chrX             3104977 50 + 17718866 TGATAATGTTAA--CAATTCACTTACTTAATCTCACTGTTGGAGCTCTGTTG
s caePb3.Scfld02_0      1458692 43 +  4147112 CTATAACTTGACTTCAATTC--TTACTTATTCTAGTGGTTTGAG-------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   383226 47 - 33334924 I
e caeRem4.Crem_Contig0   283900 135 -  4500979 I

a score=-2001.000000
s ce10.chrX             3105027 31 + 17718866 ATTGGCAA-TGCAGAA--GGTTCATCGAGTTTCT
s caeSp111.Scaffold629   383273 19 - 33334924 ---------ATCAGCAACAGTGG------GCTCT
i caeSp111.Scaffold629  I 47 C 0
s caePb3.Scfld02_0      1458735 31 +  4147112 CTTGACTACTTCAACA--GGTTG-TTGTTGTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   283900 135 -  4500979 I

a score=-16160.000000
s ce10.chrX             3105058  93 + 17718866 GGGTAGTGTCTTCTCCA-----GCG---CCGTTTGAATCAAT------AT--------------TGAAGGACTGCATCGTATGTTTTTTGGCA-------GTTAGGAGAGGATGATTCTCGTTTTCA--A
s caeRem4.Crem_Contig0   284035 110 -  4500979 GATTGGTTTGTTCTCAGGTTCCGGA---ACATTTGAATCAGT------GTTTTCCAAAGGTTGAGCTTGAGTTCCCTGGTTCTGACTTTC----------CGGAAAATACAGTGGATTCCGGTTTgcaa-
i caeRem4.Crem_Contig0  I 135 I 127
s caeSp111.Scaffold629   383292  78 - 33334924 ----------------------GGA---ACATTTGCGTATGC------ATCTCCTGATGAGTAATATTGGTCTGCATAGGC--TGCTCTTGTT-------GTGGCAGCATACTG---------GTGA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458766 105 +  4147112 ----------------------GGATAGACACCAAAGTATTCAACACAATCATCAACTTGATTGTAATAGCCTTCGTTGATCATGTTCTCGTTTGGTGAATTGAGAGAAGATTGTTCCATAACTTGG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=-7306.000000
s ce10.chrX             3105151  99 + 17718866 AAGTTGA----TTGAG------CACATTGTTG---------------TTGAGTTA--TTGGCTTG--------------CTCCTCTGATAAGACGGTGCCA------------------------------GTGCATATGG--------------------AGAAGACATACTGCC-----AAGCGTTG----TCCTAT
s caeSp111.Scaffold629   383370 119 - 33334924 TAGTTCG-TTCTTGAG--------------AGAAC------------TTTAGTCACTTTGACCGGAAACAGA---ACTCTTTGTCTGATTGAGTCGTTCCGTT----------------------------GTTCATAAGG--------------------AGCATGACGATTGTT--CGAAAGAGTTGAAGttgtcat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1458871 199 +  4147112 TAGGTGGCTTCTTGAGTTTGTTGATCTTGTTGAACTTGTTGTGTTTGTTGGACTATTTCAGCTTGATGCCAATTGACTCCTTCTTTATATGGATGATGCCgtttgaatttattgattggAATAGGGAGTACTTTCACAGGGAAAAGAACTTTCTGTTTCGAAGTATCACGATTGCCAGTGGCACTGTTGGGAGGCTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   284145 127 -  4500979 I

a score=-33764.000000
s ce10.chrX             3105250 179 + 17718866 ------TACTAGTAGTTTTGCCGTGCT--------GTGGCA-----------GCACTTTGCTTATTTTTACGGGGAATAA--TGCTTTCGCCTTT--TTTTGGACCGGCTTAACGCTCTTGTACGGATGATGTTTGTTGG----ATTCTGCCAC-------AGGAGGAT---TTGAATACACTTTGGGTGCCGCATAAGTT--GTCTCATGAT---------TCATAGACGTT------
s caeRem4.Crem_Contig0   284272 219 -  4500979 ------TGCTGGTT-GTTGGTAGGCTACATACGTCGGAGTACTGTAGGGAattttcttcacatttctGAATGCAGCAGCTAGTTTTGATGGCTGACTGCTAGAAATT-CTGCTGATTTTTGTTGCGATGTTGTTTTTTACTGCTGACTTGCTGATTGTTGTAGTAGTTT---TTGCAACAGTTACCGCAGGTGTAGGTGCTGTATGATCTTGT---------TCAAACTcatatttgtt
i caeRem4.Crem_Contig0  I 127 I 78
s caeSp111.Scaffold629   383489 133 - 33334924 t-ttcttgttgacCATTTTGTTGACCA--------GAGCGTCTTGA-------------------------GCCGGAGCA-----------------GTCTGGAG------------------------------TGTAGCCATATCCTG-----------ATAGACCTCAATTGGACTCCCATTGTCAGTCGGAGTAGAG--AAGTCACTGG---------TTGGAGCTGGAGTA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1459070 218 +  4147112 TGTTGGTGTAGACC-TTTTGGTAGCCA--------GTGGCACTTGACTGAATATACTTCATTCTTTGATTCGACAAATCAA-TGCTCCCGTCTTTCCGTCTGAGAAT--TGATGGCTTCTGTTGTGA-GTTGTTTTGTGGCACTGTTCTGC---TTGCATAAGAAGACTCTATTGCGCCAGGTTTCTTATT--GACCAGTTTCAAATCATTGAGATCCATTCTTGAAGTCATAGTT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=602.000000
s ce10.chrX             3105429 24 + 17718866 CCAGC------------ATTGT----------TGGCATCTATTGTG
s caeSp111.Scaffold629   383622 43 - 33334924 TCAAC---TGTCAGCTCATTGTATTCAGTGACTGGGACCTCTTGTG
i caeSp111.Scaffold629  C 0 I 113
s caePb3.Scfld02_0      1459288 36 +  4147112 TCAACACTTTCCATCCCATTGT----------TGTTACTCATTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   284491 78 -  4500979 I

a score=-997.000000
s ce10.chrX             3105453 38 + 17718866 ATAGGGCCAGTAGTGTTAAAATTAGGAGTATGATGTAG
s caePb3.Scfld02_0      1459324 20 +  4147112 TTATGGCTTTTCTCGGT------------------TAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   383665 113 - 33334924 I
e caeRem4.Crem_Contig0   284491 78 -  4500979 I

a score=-5621.000000
s ce10.chrX             3105491 62 + 17718866 CTCATTTTCAGTAGTAGTAGGTATGGGTTGATTGATGCAGGGTTCCGTTTGTTCTCC--AGCTG------------------------------------
s caeRem4.Crem_Contig0   284569 68 -  4500979 CACATTTTCAGGGGTAACA--------TTTGTTGATAT---TCCTGGTTGACTATCGAAAACTGTGTCCAT--TTGA-----GAAT--------------
i caeRem4.Crem_Contig0  I 78 C 0
s caePb3.Scfld02_0      1459344 74 +  4147112 ----TTCT-----GTTTCC--------TTAGTTGCT-------TTGGTAGGTTCTTG--AACTGACTCCATACTTGACGCTTGAACTTGATCCTCCAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   383665 113 - 33334924 I

a score=-21367.000000
s ce10.chrX             3105553 179 + 17718866 ---------------------------------TCACTACCTC---ATCCGAAAAGTCAAAGTTACCATATACATCGTAGCCGT-TCATGTCTGTCATTTCCTGCA---------TGCCGAAT---------GGATACGAAAATGAATCATCCTT-----GATTGTGTA-------TCCATATTCATCATCTTCCTTTCTCATTTGACCATCTTCACCAAAAAACAAATCGTGTTCAAAAAGTGAA
s caeRem4.Crem_Contig0   284637 206 -  4500979 TCATCCGCTCCTCCGAAAACAGCAAGTCATGTGTAACATCAGTCGTACTGAATGGGTCAAAGCTATCAAGCGGGTTGAATCCAT-AAATTCCAACTGTGTCGTGCAGATTCATGGTGTTGAATAACGAATCTTCTTCCATAAGTT--CCACCGTC-----GGCTCTTCA-------TTTACAATGGGCATCGC----------------ATTATT---------CATTTCTTGATCAAAGAGCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   383778 168 - 33334924 --------------------------------TCAGTATCCTC---ATTGTCGAAGACAAATTCCGGATACGGATCATAGCCAA-ACATGCCTGGTTCACCGTGAAGATCT----TGTTGAAT--------GAATTCTGTGGGCG---------------GTCTGTCCAA------TTCATCTTGAGTATCCT---------GTTGATTATTATTTCCGTACAACGCTTCCGGGTCGAATGAGAAG
i caeSp111.Scaffold629  I 113 C 0
s caePb3.Scfld02_0      1459418 203 +  4147112 ---------------------------------CAACATCTTCCGAATTTCCAGGATCAAAGTTCAGGAAATGATCGTAATTGATGCCTCCATAGTtataagaaaacaaat----tatttgacTCC-CCTATGTTTCCGTAGTCG--CCAAAGTCGCTGAAGCTACCCAGACTCCCGCCATCTTCTACATCCTGAT---CAAGCTGGGAATGattgttgttgattttgtCTGTTCCAAACAAAGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  102558 652 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=23909.000000
s ce10.chrX             3105732 123 + 17718866 GAATCTCCGTAGATGCCATTGAACAGTTTGTCATTCTGCTGAGGAGTGATCGCCCCACTGATGAATGGATCTTCTTCAAACCGTAGT---TCACTACCCAAAAGTTCGTTACTGCTCAT---------------------------------AGTTTTG
s caeRem4.Crem_Contig0   284843 156 -  4500979 GTATCTTTGAACAAATCTTCGAACATGTTATCGTTGTCATGTATGAATGCAACACCACTGATAAATGGATCATCCGGAAAAAGTAGG---TCATTACCCAGAGATTCGTTACTGCTCATCATGATTATCTGAAAGAATTAATTTTGGAGGTGAATGTTa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   383946 126 - 33334924 GAATCACCAAGGAGATCGTTGAAGGCATTTAGGTTTTCTTGAGCAGACATCGCTCCTCCGATGAATGGATCATGTCCAAACAATAGGTGTTCATTACCCAGTGGTTCGTTCATTGTTGT---------------------------------AGTATTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1459621 126 +  4147112 TCTCCATAAAAATCATCGTCAAATAAGTTGAAATTTCCTTGTGAAGACGTGGCCCCGCTAATGAATGGATCATTCCCATACAATAGGTCATCATTACCCAGAGATCCGGTACCATTCAT---------------------------------ACTgtta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  103210 123 +   227596 GAATCTTCAAATATGTCTGGAAACAGCTGATCGTTGTGCTCCTCCGAAATTCCTCCACTGATAAACGGATCATCTTCAAATAGTAGT---TCATTACCCATCACAGTGCTGTTGTTCAT---------------------------------TGTTTTG
i caeJap4.Scaffold17545 I 652 I 1409
e cb4.chrX              8156282 1946 + 21540570 I

a score=-5733.000000
s ce10.chrX             3105855 12 + 17718866 ATTA---------------TCTGGAAA-----------------------
s caeRem4.Crem_Contig0   284999 50 -  4500979 aaagaaagacaaaaacaaatttaaaatcgatttttagaCTGAATTAGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   384072 21 - 33334924 TGAG------AATAACAATTTTGGAAA-----------------------
i caeSp111.Scaffold629  C 0 I 236
s caePb3.Scfld02_0      1459747 11 +  4147112 tta----------------tctgaaaa-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=-5612.000000
s ce10.chrX             3105867  75 + 17718866 --------------ATTAG--------TACAGTTAAAC-----------------------------ATGTGGAATAGTTAAGCGGTAGCGTAATTGAATTCAAAGTTAGGTAAAGtattttattt
s caeRem4.Crem_Contig0   285049 122 -  4500979 ATGAGGACAAATCCATTAGGAAACCTATGAATTAAAAGCACACCTCAGATTTACGACCGCAATAATTATGGGATTGGATTGAGGGAAA---TGAGCAGTCAGACAGATGCGCAGATGCTTTGgct-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1459758  70 +  4147112 --aatgccaaaat--------------tgaatttaaaa-----------------------------atgggttattgtt-----------taaactgtgaaaaaaatgaataaaagatCTTGCTT
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384093 236 - 33334924 I

a score=-747.000000
s ce10.chrX             3105942 28 + 17718866 t---aaaatatta-----------------------tctggaaaatttaaattt
s caeRem4.Crem_Contig0   285171 52 -  4500979 ttgaaaaagatgaacgAGCAGAAGCCgtgattcaaatttgaaaattttta--tt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1459828 36 +  4147112 I
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384093 236 - 33334924 I

a score=1446.000000
s ce10.chrX             3105970 16 + 17718866 ttaataaataaaataG
s caeRem4.Crem_Contig0   285223 16 -  4500979 ttaatagaagaaagag
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1459864 16 +  4147112 TTAGTCGGGAAAGCGG
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384093 236 - 33334924 I

a score=-21603.000000
s ce10.chrX             3105986 134 + 17718866 TTTATC--CAATAAATCCGTTTATGAAATTG--------TAAGA------------GGAAGATATATTAAATCCTT--AAAAAAATGTTCTTGCTCACGGAGCAA-GATCGATA------TA-----------ATGCTTATTTCATCAA--AAGTCACAGCCGAGAAATCAATTTTGT----------
s caeRem4.Crem_Contig0   285239 132 -  4500979 ----tct-ttaaaatttt-ttaaaagaatta--------taaaatgtatatttacggaaaagtgaaataatcgatt----------ttttttgtatgcGGAATTT---TCCATA------TA-----------ATCTATTTAATTTTAATGCGGTTAT--TGATGAAATCAAATAtgt----------
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold629   384329 132 - 33334924 TTTGTC--TGATAACT-----------------------GAACGCCTTCGAGAGCcgaaatatatatatattaaTTAAGGGTGGGCGTCTGCGCATAGGGAATATTTATCAATAGGGCCATG-----------AAGTTTTTGTTATTAA--CAGTTAC--CTAATGAatct----------------a
i caeSp111.Scaffold629  I 236 C 0
s caePb3.Scfld02_0      1459880 173 +  4147112 TGGGTCCATTATAATTAT-AAGATAGAAATGAGCAAAAGGAGGATGAGCAAGCACGGAAATAGACATCCGTGAACC---------CATCTtatgttaaaaaaaacaaatcgata-GACTGTGTAGACAGAGAAAAGGGAGGGGTGCTAA--TGTCCTC--TCAATAAATTTTACATGTCATCGCCACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=459.000000
s ce10.chrX             3106120 22 + 17718866 TTGATAAACAACAACAAAAGAT
s caeSp111.Scaffold629   384461 22 - 33334924 ttgatttttgacaaaatcaact
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1460053 22 +  4147112 TTCAAAACTGATAACATGTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   285371 16 -  4500979 I

a score=-11387.000000
s ce10.chrX             3106142 187 + 17718866 ---TTAGAAAAT-AACAAAAGATAGAATTCAAGAAA----------------TATAAATTTCTA--AGAAAGATTTGAAAAAACACCT-------------CTTGCTTTTTGA--------ATTGAAAAACGAATA-CCGCCATTTGAGAAGGAACACC-CGCGAGTT----TCAT----TGGC------GGGAATTGTCGGTGGAGCGCACTTGCATACAAC-GTCCCATGTCTTCTCTCGTGAGT----
s caeRem4.Crem_Contig0   285387 168 -  4500979 ttttt----agttaaaaaaatatag-----aaaaaa----------------tgtgaattttaatatgaaaaaattcaaaaaccaacg----------------aaatgct----------attcaaatgCCAAGA-ACCCCGCCAC-------------CGCCACTG----TTATCGGATGGCAATGGTGGGTGTTGTctgtggagcgcgtttgcaa-aaaC-------------CACCCAATAACGAGC
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold629   384483 176 - 33334924 tttgttaaaaat-aaaattggaaag-----aaaaaa------------------------------cgaagaa----cgtaggcaatt----------------gatttttga----accaaTTCGAATGAGAAGACCACCCGCGAAAGAATGCGAACA-CACCATTA--GGTCGTTGCATGGT-------GGTACTGTCcgtagagcgcgtttgcat-cGCCGCCCGCACCTCAACGTACCACAGC----
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1460075 232 +  4147112 TATACAGAGAGTAAAAACTGtaaag-----acaaaaaatcaatacgtTCCATCGTAAAtcttatctcaaaaaaatctcaaggacaatgagaaaaaaggggcTGAGATGGCTAACACCATTAATTCAAATGAAGAGG-CACCCTCCTCAGAAGACGAACAGCGATAGTGGTGGTCGTATAATGGC-------GAGGTTTGCCGTAGAGCGTATTCGCCT-CATC-TCTGGGTCTCCTCTCTCATCATT----
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=-1520.000000
s ce10.chrX             3106329 43 + 17718866 GAAAACATTATTGCAAGATAGGAGAGAAAAAGAAAGAGATGGT----
s caeRem4.Crem_Contig0   285555 31 -  4500979 GA----------GGCGGATGGACGGGAAACTAATAGAAATG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   384672 33 - 33334924 -------------GCAGAAGGGTGAG-accaaatgaaaatggaatgg
i caeSp111.Scaffold629  I 13 C 0
e caePb3.Scfld02_0      1460307 34 +  4147112 I
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=-6939.000000
s ce10.chrX             3106372 63 + 17718866 CAGAAAAATAAATACAATTGCAAG----ACTTC-CCTTGGCAA-------TTTCTGAATCCCT----CAACAAT---ATGTG
s caeRem4.Crem_Contig0   285586 55 -  4500979 --------------------CAAATGAAATGGGCCCTCAGCAA-ATGCGATTTCAGAATCTCGTCAACAATACT---AG---
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold629   384705 64 - 33334924 -----gACTAATGCCGTTGGGGAA----------TCTTGTCAACAAGGCCACCTGCCATCTCttgattaaaaat---atttg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1460341 80 +  4147112 CAGAAGGCTGAGGACAGATGAGAAGGAAATGGG-CCTCTTCTA-ATGCCTTTTTGGAATCTCGTCAGCCAGAGTACCACCTG
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I

a score=-270.000000
s ce10.chrX             3106435 1 + 17718866 A
s caeSp111.Scaffold629   384769 1 - 33334924 g
i caeSp111.Scaffold629  C 0 I 147
s caePb3.Scfld02_0      1460421 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   285641 38 -  4500979 I

a score=120.000000
s ce10.chrX             3106436 25 + 17718866 TTGTTTTCATAAATATTTTTCATGC
s caePb3.Scfld02_0      1460422 23 +  4147112 CAGCTCT--TAATTAATCTTCCTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384770 147 - 33334924 I
e caeRem4.Crem_Contig0   285641 38 -  4500979 I

a score=-5520.000000
s ce10.chrX             3106461  64 + 17718866 ----------TGAACAATAAAATCAATTCG--------ACATACTTGTGGAAT------------------TTTTGT----------------------------GAGCGAAAATAGATCATCGATGT
s caeRem4.Crem_Contig0   285679 114 -  4500979 ------caaacaaaaaagtcgttCAATTCGTTCAAAACAAGTGTGAGAGAAAT--------CAATAAACATTCATGTGACGGAATCTTACGCATTACGATTCGTGCGGAGAAACAATTATAATGATAA
i caeRem4.Crem_Contig0  I 38 C 0
s caePb3.Scfld02_0      1460445 115 +  4147112 TGaagggaaatgaagaaaatgaagaatgcgCCCA----ACGTACTGGAGAGATGTGTACCACAATCAATACACATAC-ATGTGATATAGTGAAACAT--------CAAAGAAGCGAGTGTGTcatcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  103333 1409 +   227596 I
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384770 147 - 33334924 I

a score=-1859.000000
s ce10.chrX             3106525 13 + 17718866 TCCCAATGCCAAT-
s caeRem4.Crem_Contig0   285793 12 -  4500979 TTACAAAgccaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1460560 12 +  4147112 tcgaaaaaaaac--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  104742 13 +   227596 TTTCAAAGTTGA-A
i caeJap4.Scaffold17545 I 1409 C 0
e cb4.chrX              8156282 1946 + 21540570 I
e caeSp111.Scaffold629   384770 147 - 33334924 I

a score=-395.000000
s ce10.chrX             3106538 2 + 17718866 GC
s caeSp111.Scaffold629   384917 2 - 33334924 aa
i caeSp111.Scaffold629  I 147 C 0
s caePb3.Scfld02_0      1460572 2 +  4147112 ca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  104755 2 +   227596 GA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8156282 1946 + 21540570 I
e caeRem4.Crem_Contig0   285805 0 -  4500979 C

a score=220741.000000
s ce10.chrX             3106540 402 + 17718866 AATAATTTATTCAAAATAATGAAATATCGAAGTGAATGCCAGAT---------TTTATGC---AAAGTGAAA----CGAAAAAGCAAAT---TT-------ATAGGGC----------------------TCTATTCAACTGTGGACATACATCGCCGAGACATGGATGGAGAACGAGAATTATGCTGACTTCGAGCAAAGAGAGAGCTCCGATTGTGGTTTTCAACGACAAATACATTCTGCTTCAACACCTCATCTTCACCGATTCTAAA-TAA--TAAATT-TCAGTCGAGTG---------------TAT------AACAAAAGAGAAA------CTGACCTATCAAAGATAAGACCATCGACGTTCATTTCATCCCGGAAATGTTTCTGAACTTCCTTCGAATTAAGATCATCTCCCCAAACGAATTTTATAAGTCCATATTTTTCAGCAATTTCTATTGGTTTTTGATCCTGAAA
s cb4.chrX              8158228 421 + 21540570 aataatttatt--atttaGTGATg-----aaaagaaagtgaaat---------tttatgcaaaaaagtgaagaaaacaaaaCGGCGAACGTTTCTTCGTCTATAGAGAAGACGTCG-------------TCCTATTCAACGACGGACATGCAGCGTCGAGACATGGATGGAGAGCGCGAGTTGTGTTGACTCCGAGCGAATAGAGAACTACGATTGTGGTTCTCGACTACGAATACGTTCTGCTTCATGACTTCGTCCTCTCCGATTCTGAATTAA--TGAGAA-TCAGATCCTGC---------------TAT---ACGAAAAGGCGGG---------CGTACCTATCAAAAATGAGACCATCTACATTCATTTCctctttgaaatgtttttgaatatctttcgAATTGAGATCATCTCCCCATACGAACTTCACCAATCCATACTTTTCAGCGATTTCAATGGGGTTACGGTcctaaa-
i cb4.chrX              I 1946 C 0
s caeRem4.Crem_Contig0   285805 433 -  4500979 -ataatttatt---ttttgtga-------aagtgAACACGAAAG---------TTTATGC---AAAGTGAAGAAGCTTGAAAA---------TTCTAATATGTAGTGCGCGGAACG--------------CCTATTCAACGGTGGACATGCATCGGCGAGACATAGAAGGCGAGCGAGAGTTGTGTTGGCTCCGGGCGAATAGAGAGCTCCGATTGTGGTTCTCCACAACGAATACATTTTGTGTCACTCCATCTTCCTCACCGATTCTGTAATAG--TCATAAgtcagaaatttcaaagaataatgggaatatttgaaaaaaaaacgggaaaatatGACCAACCTGTCAAAAATGAGACCATCgacattcatttcttctttgaattgtttttgaatatccTTTGAGTTCAGATCATCCCCCCATACAAATTTCACCAGaccatatttttcagcaatttctaTTGGATTTCGGTcctgaaa
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   384919 441 - 33334924 aataatttatt---aat---gAGA-----AAGTGAACGCCAGAG-----TTCTTTTATGC---AAAGTGAAAagcttgaaatttcaaataaatttccagtcctgaaattgaaaatattctctAATATTCTATCACTCGACAGTGGACATGCATCGCCGAGACATTGAAGGAGAACGAGAGTTGTGTTGGCTACGAGCAAAGAGAGAATTCCGATTGTGGTTCTCGACAACAAACACATTTTGCTTCATCACCTCGTCTTCCCcgattctaaa----------aa-tcagaagagtACAATTTTCGTTAAAGtgc-------aaaaatgagaattca---cAAACCTATCGAATATGAGACCATcaacattcatttcttctttgaaatgtttctgcACTTCTTTCGAATTGAGATCATCACCCCATACGAATTTCACTAATCCGTACTTGTCAGCGATTGTAATTGGGTTCCGgtcctgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1460574 421 +  4147112 aataatttatt---gatggGGAGA-----AAGTGAACGCCATAG--------TTTTATGC---AAAGtgaaaagcttgaaaattgaaataaatt-------ctGAAGTTTTAATTA----CTAA------ATCATTCCACAGTGGACATGCATCGTCGAGACATTGAAGGAGAACGAGAATTGTGCTGACTTCGAGCAAACAGAGAGCTCCGATTGTGGTTTTCGACAACGAATACATTCTGTTTCATCACCTCGTCCTCCCCTATTctgga----------aa-tcagaagaatG-GGTAGGGCTTGGAGTAT-------ACAAACGAAAATTCT---C--ACCTATCAAAGATCAAACCATCAAcgttcatttcttctttgaaatgtttctgaaCATCTTTTGAATTGAGATCATCGCCCCATACAAATTTGACCAATCCATATCTGTCAGCAATTGCAATAGGATTTCGGTCCTTAAA
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17545  104757 401 +   227596 AATaagtgaaa---aac------------aaaaaaacatggaaaaggGTTTGTTTGTTGC---AAAGTGAAG-----GAAAAGCCTGA-------------ACAAAGCC---------------------ATTATTCGATGGTGGACATACATCGCCGTGAGATCGACGGCGAACGGGAGGCGTGCTGGCTGCTGGCGAAAAGTGAGCTGCGATTGTGATTCTCCACGACGAACACATTCTGCTTAACCGCATCATCTTCCCCGATTCTGAAAGGAGTTTGAAA-TGAGCACATTT-----------GCAGTGG---Acagagaaacaaaa--------caaacctgTCAAAAATGAGACCGTCCACTCTCATCTCGTCTTTAAAAAGCTCTTGAACTTGTTTCGAATTGAGATCGTCCCCCCAAACCAACTTCACCAAACCGTACTTTTCCGCAATGGTTATTGGGTTTCTGTCCTGTAA
i caeJap4.Scaffold17545 C 0 C 0

a score=-634.000000
s ce10.chrX             3106942 5 + 17718866 ATGTA
s cb4.chrX              8158649 1 + 21540570 ----a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   286243 5 -  4500979 aaata
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   385360 3 - 33334924 --taa
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  105158 5 +   227596 ATACA
i caeJap4.Scaffold17545 C 0 I 75
e caePb3.Scfld02_0      1460995 33 +  4147112 I

a score=696.000000
s ce10.chrX             3106947 11 + 17718866 CTAATTATTTT
s cb4.chrX              8158650 11 + 21540570 acaattttttt
i cb4.chrX              C 0 I 356
s caeRem4.Crem_Contig0   286248 11 -  4500979 gtAATAGAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   385363 11 - 33334924 aaagttcattt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1460995 33 +  4147112 I
e caeJap4.Scaffold17545  105163 75 +   227596 I

a score=-1078.000000
s ce10.chrX             3106958 18 + 17718866 AACTTGATAATATAATGA----
s caeRem4.Crem_Contig0   286259 18 -  4500979 ----GACTACATGACGGAACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   385374 18 - 33334924 aGATCAATAATTTAAGGA----
i caeSp111.Scaffold629  C 0 I 3
e caePb3.Scfld02_0      1460995 33 +  4147112 I
e caeJap4.Scaffold17545  105163 75 +   227596 I
e cb4.chrX              8158661 356 + 21540570 I

a score=251.000000
s ce10.chrX             3106976 4 + 17718866 GCAT
s caeRem4.Crem_Contig0   286277 4 -  4500979 ACAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1460995 33 +  4147112 I
e caeJap4.Scaffold17545  105163 75 +   227596 I
e cb4.chrX              8158661 356 + 21540570 I
e caeSp111.Scaffold629   385392 3 - 33334924 I

a score=0.000000
s ce10.chrX             3106980 765 + 17718866  
e caePb3.Scfld02_0      1460995  33 +  4147112 I
e caeJap4.Scaffold17545  105163  75 +   227596 I
e cb4.chrX              8158661 356 + 21540570 I
e caeSp111.Scaffold629   385392   3 - 33334924 I
e caeRem4.Crem_Contig0   286281   0 -  4500979 C

a score=1096.000000
s ce10.chrX             3107745 21 + 17718866 CATGTTATTTTTTTTCAAAAT
s cb4.chrX              8159017 21 + 21540570 CatattgtcttttttttaagT
i cb4.chrX              I 356 C 0
e caePb3.Scfld02_0      1460995 33 +  4147112 I
e caeJap4.Scaffold17545  105163 75 +   227596 I
e caeSp111.Scaffold629   385392  3 - 33334924 I
e caeRem4.Crem_Contig0   286281  0 -  4500979 C

a score=-730.000000
s ce10.chrX             3107766 12 + 17718866 --AGATACTATCAA
s cb4.chrX              8159038  9 + 21540570 ---GATATCTCC--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17545  105238 12 +   227596 AAATACATTTTC--
i caeJap4.Scaffold17545 I 75 C 0
e caePb3.Scfld02_0      1460995 33 +  4147112 I
e caeSp111.Scaffold629   385392  3 - 33334924 I
e caeRem4.Crem_Contig0   286281  0 -  4500979 C

a score=2764.000000
s ce10.chrX             3107778 8 + 17718866 ACTCACGA
s cb4.chrX              8159047 6 + 21540570 --TTACAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   385395 8 - 33334924 ACTTACAA
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1461028 8 +  4147112 acctACAT
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17545  105250 8 +   227596 ACGCACAT
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   286281 0 -  4500979 C

a score=130392.000000
s ce10.chrX             3107786 222 + 17718866 TCAAAAGTTCTTCACTATGAAAATTAACGCCAAGAAGCTCACATCCAGCAGCGAAATTGGCTGCAATCTTGCTACAATCTGATCGGATATCCTG-AAAAGA---------TAAACTATTTTTCGCATTACACTTTTTTATATGCTCCTACTTGAAATGGCATATATCTGTTTGTCGCCCCAACCACCAAAAATGAAACCGGATACTTATGTTGTTTTTTTGTAATCCTGAAA--
s cb4.chrX              8159053 220 + 21540570 TCAATAATTCTTCACTATGAAAATTCACACCAAGGAGCTCACATCCAGCAGCAAAATTGGCTGCAATTTTAGAGCAATCAGATCGAATATCCTG-AAATAAATATT---CTCACTAATCTATGATTCTCT----TTTCTATTGCA--TACTTGAAAAGGCATATATCTATTAGTGGCTCCCACGACGAGAAAGGAAACGGGATACTTGTGCTGCTTCTTGGTTATCCTGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   286281 220 -  4500979 TCAGCAATTCTTCACTGTGAAAGTTGATTCCAAGAAGTTCGCATCCAGCGGCAAAGTTTGCTGCAATTTTACTACAATCTGACCGAATATcctg-aaataaatgtt----tca-----cTGTAAATTTCCACTATTTCTAATATAATTACTTGAAATGGCATGTATCTATTAGTAGCTCCTACCACCAAGAAAGATACGGGAtatttgtgttgttttttggTTATCCTGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   385403 171 - 33334924 TTAAAAGTTCTTCACTGTGGAAATTGACTCCCAGCAATTCACAACCAGCTGCAAAATTAGCCGCGATTTTGCTGCAATCCGATCGGATAT-----------------------------------------------------------CTTGGAATGGCATGTATCTGTTTGTTGCTCCGACAACTAAAAATGATACTGGATATTTGTGTTGCTTCTTGGTTATCCTGA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1461036 171 +  4147112 TCAGAAGTTCTTCACTATGGAAGTTCACTCCAAGAAGTTCACACCCAGCGGCAAAATTGGCTGCAATTTTACTGCAGTCCGATCGGATGT-----------------------------------------------------------CTTGGAATGGCATGTAGCGATTTGTGGCTCCTACTACCAAGAAGGAAACTGGGTACTTATGCTGCTTTTTAGTGATCCTGA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  105258 218 +   227596 TCAATAATTCCTCGCTGTGGAAGTTGACGCCAAGGAGCTCACACCCCGCTGCAAAATTGGCTGCGATAGTGCTGCTGTCCGATCGAATATCCTGCAAATACACATTTTCCTTGACAATCACTGAAACGTC--------------AATTACTTGGAACGGTACGTATCTGTTTGTGGCTCCAACTACTAAGAATGATACCGGGTACTTGTGTTGCTTTTTCGTGATCCTGA--AG
i caeJap4.Scaffold17545 C 0 I 134

a score=-15839.000000
s ce10.chrX             3108008 91 + 17718866 GTTTAAACTTATATCTGATAATAATACTATAGTTCTAGCTATCATAGTTTAGAAAATAATTGTCCCAGAGCTGAAAAATC--TCATCCACAT-A
s cb4.chrX              8159273 11 + 21540570 -----------------------------------------------------------------------AAAGAAATC--TC----------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   286501 20 -  4500979 -----------------------------------------------------------------------AAATTCACA--TCATGTATATA-
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold629   385574 27 - 33334924 ---------------------------------------------------------AATTAT--------AATTCCATCAGTCATCccact--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1461207 37 +  4147112 ---------------------------------------------AGCATAAATACCAATTAT--------AAATCCCTC--TCATATAAAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  105476 134 +   227596 I

a score=0.000000
s ce10.chrX             3108099 3 + 17718866 GGT
e caePb3.Scfld02_0      1461244 0 +  4147112 C
e caeJap4.Scaffold17545  105476 134 +   227596 I
e cb4.chrX              8159284 3 + 21540570 I
e caeSp111.Scaffold629   385601 0 - 33334924 C
e caeRem4.Crem_Contig0   286521 16 -  4500979 I

a score=0.000000
s ce10.chrX             3108102 13 + 17718866 TTTATAGCGTGTT
e caePb3.Scfld02_0      1461244  0 +  4147112 C
e caeJap4.Scaffold17545  105476 134 +   227596 I
e cb4.chrX              8159284  3 + 21540570 I
e caeSp111.Scaffold629   385601  0 - 33334924 C
e caeRem4.Crem_Contig0   286521 16 -  4500979 I

a score=-16909.000000
s ce10.chrX             3108115  96 + 17718866 GGAAAAGGGGTAGTGAATGTGGGAAAATAAACAAAAAA--CTGCAAGACTT-----TGAACAAGCGGCAGTTTCTC-----AAAATTTTTC--------AAAAAGTCTTATTAAAC
s cb4.chrX              8159287  13 + 21540570 -------------TCAAT------------------------------------------------GCAATTTC------------------------------------------
i cb4.chrX              I 3 I 16
s caeSp111.Scaffold629   385601  12 - 33334924 ----------------tt------------------------------------------------tctatttctc----------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  105610 115 +   227596 gcaaaataagtaatactt-tgaaaaaaaaaaaaataaatgctcaCAAACTCAACGAGGGGTGAGCTACTGActctctttttgaaatggttctgattcgggaacgttctgattcggg
i caeJap4.Scaffold17545 I 134 C 0
e caePb3.Scfld02_0      1461244   0 +  4147112 C
e caeRem4.Crem_Contig0   286521  16 -  4500979 I

a score=-353.000000
s ce10.chrX             3108211 20 + 17718866 TTCTCCTCCCATTAAACTTC
s caeJap4.Scaffold17545  105725 13 +   227596 gtagcctc-------agtTT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1461244  0 +  4147112 C
e cb4.chrX              8159300 16 + 21540570 I
e caeSp111.Scaffold629   385613  0 - 33334924 C
e caeRem4.Crem_Contig0   286521 16 -  4500979 I

a score=339566.000000
s ce10.chrX             3108231 404 + 17718866 CTTACATTGTACAAATATCCGGCTCAAAGCACGAAAATATGATTCTACGATTTCCCGCGTGTTCTGCTACTTCGGCTAGTATAATGTCAACAAATTTGTTTTGTTCAAAGTACCCCTGACATTCATGGCTCCCATCCTGCAAAC-TT----TGTTAACG-----------TTCCTAATTTA-----TTGTTCATTCTGCGTCACCTGCATATACATTGGATATTTAATCTCAATATTCAATCCTACATTCTCGTCAACGTGTCGTAGCACTTGTGCCAGCGAGGGAAAAGGTACGTGCAACTCGTCCGTCTCCGTCTTGCTGGGTGTCACCGACAAAGCAACC---GGGGATTCGGCAGACGAGCCATTCGCTCGAGAAATATGCTCAAAGTGCAAAAGATTGAGCTGTGCCAGAGTCAAGTCCTGA--G--
s cb4.chrX              8159316 399 + 21540570 TTTACATCGTGCAGATGTCCGGCTCAAAGCAGGAAAACACAATTCTCCTGTTTCCGGCATGCTCGGCCACTTCTGCCAAGATGATGTCCACGAATTTGTTCTGCTCAAAGTATCCCTCGCATTCATGGCTTCCATCCTAGAAAA-TTGGTGTTTCATAA-----------TCCCCCTTTTA-----AATTCTT------GT-ACCTTCATATACATTGGATATTTGATCTCAATATTCAATCCCACGTTCTCATCAACATTTCGCAGCACTTGTGCCAGTGAGGGAAAGGGTACGTGCAACTCGTCCGTCTCATTCTTGCTGGGTGTCACCGAGAGAGTCACG---GGCGAGTCCGGCGCGGTGCCATTCGCACGAGAGATATGCTCAAAGTGCAGCAGTTTGAGTTGGGCCAGTGTCAGGTcct----g--
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   286537 398 -  4500979 CTTACATTGTGCAAATATCCGGTTCAAAACAGGAAAACACGATTCTTCTCTTTCCGGCGTGCTCGGCTACTTCGGCCAGAATAATATCAACAAATTTGTTCTGCTCAAAGTATCCCTGACATTCGTGACTCCCATCCT--AAAA-TTGCAGTTTTAATC-----------TCTGTCCTCTG-----TCGTTTA------GTCACCTTCATATACATAGGATATTTGATTTCAATGTTCAATCCGACATTCTCGTCAACGAGCCGTAGTACTTGTGCCAGGGACGGAAAGGGTACGTGCAATTCATCCGTCTCGTTTTTGCTCGGTGTCACTGAGAGTGAGACGGGCGGCGAGTC---CGCGGTGCCATTGGCACGAGAGATATGCTCAAAGTGCAAGAGCTTGAGCTGAGCCAGAGTCAAGTcct----g--
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold629   385613 394 - 33334924 -tcacATCGTGCAAATATCCGGTTCAAAGCACGAAAACACAATTCTGCGATTTCCGGCGTGTTCAGCGACTTCAGCAAGAATGATATCTACAAATTTGTTCTGCTCAAAGTATCCCTCACATTCGTGACTTCCATCCT--GAAA-TTGTCGTTTTAATCC----------TGTGTCTTATG-----CCATTAA------GTCACCTTCATATACATTGGATATTTGATCTCAATATTCAATCCCACGTTTTCGTCCACATTCCGTAGCACTTGTGCCAGCGAGGGGAAAGGTACGTGCAATTCGTCGGTCTCATTCTTGCTCGGTGTCACTGAGAGTGAGACG---GGCGAGTC---AGGCGAGCCGTTGGCACGAGAGATGTGTTCAAAGTGCAAGAGTTTGAGTTGAGCCAGTGTTAAATCC-----t--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1461244 410 +  4147112 CTCACATAGTGCAGATATCCGGCTCAAAGCAAGAGAAAACGATTCTACGATTTCCTGCGTGTTCAGCGACTTCAGCAAGGATTATATCTACAAATTTGTTCTGTTCGAAGTATCCCTCACATTCGTGGCTTCCATcct--aaaatttgaagttttaatcTTCCAATTCTATCTGTCTCGTG-----TCGTCCC------GT-ACCTTCATATACATTGGATATTTGATCTCAATATTCAATCCCACATTCTTGTCCACATTTCGCAGCACTTGTGCCAGCGAGGGGAAGGGTACGTGCAATTCATCGGTCTCGTTCTTGCTCGGTGTCACCGAGAGTGATACG---GGTGAGCC---AGGCGAGCCATTGGCACGAGAGATATGTTCAAAGTGCAGAAGTTTGAGTTGAGCCAGTGTCAAATCCTGAGat--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  105738 406 +   227596 CTTACATTGTACAAATATCCGGTTCAAAACAAGAGAACACAATACGTCTGTTTCCGGCGTGCTCTGCCACTTCCGCCAGGATGATGTCAACGAATTTGTTCTGCTCAAAGTATCCCTGACACTCGTGGGTTCCGTCCT--AAAA-CTGCGCGTGTgaccgagt-------ttttttttttggttgcttTTTCT------GTCACCTTCATAAACATTGGATATTTGATCTCAACATTAATGCCCACGTTCTCGTCAACATTTCGCAGCACTTGTGCCAGCGAGGGAAAGGGTACGTGCATTTCGTCCGTCTCAGTTCTGTCAGGAGTCACCGAGAGTGAGACG---GGCGAGTC---GGGCGAACCATTCGCTCGCGAGATATGCTCAAAGTGCAGTAGATTGAGTTGTGCTAGGGTGAGGTCCT----GAA
i caeJap4.Scaffold17545 C 0 I 36

a score=2249.000000
s ce10.chrX             3108635 30 + 17718866 TGACAAAAACAATAACA---GTTTA----AAAAGTTC
s cb4.chrX              8159715 34 + 21540570 aagaaaacaaaaaagag---gttGAGAAGAGAAAGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   286935 37 -  4500979 agaaaaacaaaacaacgaGAGTTTAGAACAGAAGGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   386007 29 - 33334924 agaggaaaaaaaaagag---gttgA----AGA-ATAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1461654 30 +  4147112 agaaaaacataaaatag---gTTTT----AGAGAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  106144 36 +   227596 I

a score=113563.000000
s ce10.chrX             3108665 148 + 17718866 AACAGGGAAACAAACTTTGATTGCGATCTCGTGCAAGGACTTGTTTTCCCCGGCAGCTGTCGGTGTGCTGGACGGGGAATCTCTTCCAGCAACAGCGACAAGCACGTGGAAGTCGTGGTAAACAACTGTTTTCAAATCCTTCAA---------------------------------AAAA
s cb4.chrX              8159749 181 + 21540570 GGATGAAAAACGAACTTTGATTGCAATCTCGTGTAGAGATTTGTTTTCACCGCCAGCTGTCGGTGTGCTTGATGGGGAGTCCCGGCCAGCAACAGTGACTAACAGATGAAAATCGTGGTACACGACAGTTTTGAGATCCTGGAAGTGTGTATTCCTTGATAAGTGGATGGAGTTAATACAC
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   286972 145 -  4500979 AGA--AGAAACGAACTTTGATAGCAATCTCGTGAAGAGATTTGTTTTCACCGCTAGCTGTCGGTGTGTTGTTAGGAGAATCTCTTCCAGCAACAGTTACTAATAAGTGAAAATCATGATAAACAACAGTTTTTAAATCCTGAA----------------------------------ACAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   386036 148 - 33334924 GAACGAGCAACGAACTTTGATTGCGATCTCATGTAGAGATTTGTTTTCACCGCCAGCTGTTGGTGTGTTTGAAGGAGAATCCCTCCCGGCTACAGTGACAAGCAAATGGAAATCATGGTATAcaactgttttcaaatccTGGAA---------------------------------ACAA
i caeSp111.Scaffold629  C 0 I 64
s caePb3.Scfld02_0      1461684 144 +  4147112 GGCCGGAAAACGAACTTTGATTGCGATTTCGTGTAGAGACTTGTTTTCACCGCCAGCAGTTGGCGTGTTCGAAGGAGAGTCCCTTCCAGCAACAGTGACAAGCAAATGGAAGTCATGATAAACAACAGTATGAAGATCctggaa-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  106180 147 +   227596 -AACAGAGAACAAACTTTAATTGCAATCTCGTGTAGTGACTTGTTTTTGCCACTGGCAGATGTTGTATTAGTCGGAGAATCCCGGCCGGCAACAGCGACTAGGACGTGGAAGTCGTGGTAAACAACCGTTTTCATATCCTTAAA---------------------------------CAGA
i caeJap4.Scaffold17545 I 36 C 0

a score=-19266.000000
s ce10.chrX             3108813  41 + 17718866 TTTGTCATCG---------------------------------CATCTC---------------------------------------------------GTGTATTCTTATAATAATGTGACAC
s cb4.chrX              8159937 125 + 21540570 GGTGTAATGGAAGGGCTCCCACACTGTAAAacatgagctcaattatctccattcctatgaaagatatagaaaaggtgtcaactaataCATATAATGTccgtgatattatgataaagaaGTAATCA
i cb4.chrX              I 7 I 75
s caeRem4.Crem_Contig0   287124  27 -  4500979 TTTGTGATG----------------------------------TTTCTC----------------------------------------------------------------AAAATGGAATTA
i caeRem4.Crem_Contig0  I 7 I 15
s caePb3.Scfld02_0      1461828  18 +  4147112 -------------------------------------------tgtttc----------------------------------------------------------------aaaatataaaaa
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17545  106327   2 +   227596 ------------------------------------------------------------------------------------------------------------------AG---------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   386184  64 - 33334924 I

a score=287197.000000
s ce10.chrX             3108854 537 + 17718866  
s cb4.chrX              8160137 538 + 21540570  
i cb4.chrX              I 75 C 0
s caeRem4.Crem_Contig0   287166 498 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   386248 555 - 33334924  
i caeSp111.Scaffold629  I 64 I 32
s caePb3.Scfld02_0      1461869 607 +  4147112  
i caePb3.Scfld02_0      I 23 I 2
s caeJap4.Scaffold17545  106329 522 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-3531.000000
s ce10.chrX             3109391 17 + 17718866 GATTTATGG-TTTTGGGA
s caeRem4.Crem_Contig0   287664 14 -  4500979 TATTAAAAG-TTATG---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1462478 17 +  4147112 -ACTGACTGATTATGTGA
i caePb3.Scfld02_0      I 2 I 15
s caeJap4.Scaffold17545  106851  5 +   227596 --ttaaa-----------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8160675  0 + 21540570 C
e caeSp111.Scaffold629   386803 32 - 33334924 I

a score=-1054.000000
s ce10.chrX             3109408 25 + 17718866 ATTTTCTAAATAATAAAATATCTAT
s caeRem4.Crem_Contig0   287678 22 -  4500979 --CACTAGAAAAATATCACGTGGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17545  106856 21 +   227596 ----tcaaaaaatcaaaaaatctgT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1462495 15 +  4147112 I
e cb4.chrX              8160675  0 + 21540570 C
e caeSp111.Scaffold629   386803 32 - 33334924 I

a score=126993.000000
s ce10.chrX             3109433 287 + 17718866 -------------CTTACTAAGTTTTGAAGAGAAACAGTTCTTGTTCTAAACACAAGGTAATCTTGGTCATTTCTAAAAACTGATCCATTGAAATATTGGTCTCCGAAAATTGGGTCTTCTCTTGTCAGCACCT------G-GAAAACAACA------GAATCAAA---AAACAATTTAAAAAATTCAAAATTTAAAGCTCTTACGGAAAGATCGGTGTTGGAAAAGCAGGGAAGACTTGGAGTTGGCAAGTTAACCACATCGTCACCATCAATCT-AAATTTTTGAAGGTATTGT--------AAATTTTAAAATTAATAAGTA
s cb4.chrX              8160675 269 + 21540570 -----------------CTAGATTTTGCAGATTAACAGTTCTCGTCCGGAAAACCAAATAATCCAAGTCATTCCGGAAAACCGATCCATTGAAATATTGATCTCCAAAAATAGGGTCATCTCTTGTGAGCACCT------ACAAATATAGAA------GGTTACAT---GAATGATTTA--------------TGATTTGCTCACAGAGAGGTCGGTGTTGGAAAAACATGGAAGTTCTGGAGTGGGCAAACTGACGACGTCTTCACCATCgatctaaaa----------aataaattctgaaaaattaggaaaactGTGAGATG
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   287700 270 -  4500979 -------------CTTACTAGGTTTTGCAAGGAAACGGTTCGTGTTCTAAATACCAGGTAGTCCGTGTCATTCCGGAAAACTGATCCATTGAAGTACTGGTCTCCGAAAATCGGATCCTCTCTTGTGAGCACCT------G-GAATGTATGC------GTACACATGTCGAACTATTT---------------CAAATGACTTACAGAAAGGTCTGTGTTTGAGAAACATGGAAGGTCTGGTGTAGGCAAGTTGACAACATCTTCTCCGTCAATCT-ATA----------AATAGA---CAAGCACTTTGTAAATTCACAAAACG
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   386835 261 - 33334924 -------------CTCACCAAGTTCTGAAGTGAAACTGTTCTCGTTCGGAACACCAAGTAGTCCtggtcatttcgaaaaacggaTCCATTGAAATATTGGTCTCCGAAGATAGGATCTTCTCTTGTTAGGAcctcaaaaaa-gagaattgtt-----------CGT---GAAAGAC-T---------------GTTTAAACTTACAGAAAGGTCTGTATTAGAAAAGCATGGAAGCTCTGGAGTAGGCAAGTTGACAACATCTTCTCcgtcaatct-gaa----------aattat--------cttTTCTCAAGCTACTA-ACG
i caeSp111.Scaffold629  I 32 I 42
s caePb3.Scfld02_0      1462510 268 +  4147112 -------------CATACCAAGTTTTGAAGGGAAACAGTTCTGGTTCGAAACACGAGATAATCGATATCATTACGAAAAACAGATCCATTGAAATATTGATCCCCAAAAATCGGGTCGTCTCTTGTTAGTACCT------A-AAGTGCCGtttttttAGATTCcat---gaaatttgt---------------ttttcaactcacGGAAAGATCTGTATTTGAAAAGCATGGAAGCTCAGGAGTTGGCAAATTAACCATATCTTCTCCATCGatct-gaaac--------aaaagt--------tttttttcacttttcc--acg
i caePb3.Scfld02_0      I 15 I 9
s caeJap4.Scaffold17545  106877 288 +   227596 TGAGATGAAATGATTTACCATATTTTGAAGTGATACAGTTCGGGTGCGGAAGACCAAGTAATCCAGATTATTTCTAAAGAGTGATCCATTGAAATATTGATCTCCAAAGATTGGGTCTTCTCTGGTCAGCACCT------A-GATATTGAAGTTGAACGAAGTTGA---ACAAAACCT---------------CATAAAACTTACTGATAAATCAGTGTTTGAAAAACAAGGTAGCTCTGGTGTCGGCAAGTTGACCATGTCGTCTCCGTCCATCT-GAATAAC------CATAATTTAgcgttcttttttgaaataata-----
i caeJap4.Scaffold17545 C 0 C 0

a score=-1851.000000
s ce10.chrX             3109720 36 + 17718866 AGTGTCTTCCATTTAAAAATT--TTTT-TAAACACTATA
s cb4.chrX              8160959 22 + 21540570 ---------------AGGTTC--TTTTGCAACCACTAAT
i cb4.chrX              I 15 I 1
s caeRem4.Crem_Contig0   287979 21 -  4500979 ---------------AGTTTC--GTTC-CTATAACTAAT
i caeRem4.Crem_Contig0  I 9 I 13
s caePb3.Scfld02_0      1462787 28 +  4147112 ----------agttcaatttctaGTTT-CTAACACTACT
i caePb3.Scfld02_0      I 9 I 6
s caeJap4.Scaffold17545  107165 27 +   227596 ---------tAATTTAACTTT--TCTT-CTAACACTCTA
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   387096 42 - 33334924 I

a score=236637.000000
s ce10.chrX             3109756 491 + 17718866  
s cb4.chrX              8160982 421 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   288013 508 -  4500979  
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629   387138 471 - 33334924  
i caeSp111.Scaffold629  I 42 C 0
s caePb3.Scfld02_0      1462821 527 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17545  107192 544 +   227596  
i caeJap4.Scaffold17545 C 0 I 1056

a score=-255.000000
s ce10.chrX             3110247 36 + 17718866 GTTAATTAT-TTTCAATAGATTTGTGAAAAAAAACCA
s cb4.chrX              8161403 33 + 21540570 ---aattac-gtccgaaacagtttttaaaaaattcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   288521 31 -  4500979 ---aattttagtttgata---tgttcaaaaaatacaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1463348 28 +  4147112 ---aataacattttgaacattcggttaaaaa------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  107736 1056 +   227596 I
e caeSp111.Scaffold629   387609  0 - 33334924 C

a score=84862.000000
s ce10.chrX             3110283 149 + 17718866 GA-AACTCACTTTGACAAAACCATAATAGGCTCAGAAGTGTTATTTTCAGATGGATCCAGGTACATAACTCGAATGTATCGAAAGTTGAACTCTTTGATAGATGAGGGAACACTGACAATTGCATGGAAAGTGTTTCTA-AAACAGAAAAT-----
s cb4.chrX              8161436 146 + 21540570 ---aactcactttgaTAAAACCATAATTGGCTCGCATAAACTATTTTCCGAAGGATCTAAATACATCACCCGTAAGTATCGAAATTGGAATTCTTTCACTGTGCCAGGAACGCTGACCACTGCAT-GAAGGTGTCTCTG-GAACAAATCGT-----
i cb4.chrX              C 0 I 189
s caeRem4.Crem_Contig0   288552 150 -  4500979 gatAACTTACTTCGACAATACCATAATCGGCTCAGAAAGACTGTTTTCAGAAGGGTCCAAGTACATAACACGTAAATATCTGAATTGAAATTCCTTGACAAAGAACGGAACACTGACGACTGCATGGAATGTGTTTCTG-GAATAATTCAG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   387609 139 - 33334924 ----------TTGGACAGAACCATAACAGGTTCCGAAAGACTGTTTTCTGATGGGTCTAGGTACATTACCCGTAAATatcgaaattgaaattctttcACTGCAGATGGAACAGTCACAATTGCATGAAATGTGTTcct--aaataaaaatt-----
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1463376 148 +  4147112 ---aactcactttgataAAACCATGACAGGTTCTGAGAGACTGTTCTCTGATGGGTCCAAGTACATTACCCTCAAGTAACGGAAATGGAACTCCTTAACGGAAGCTGGAACGCTAACAATCGCGTGAAatgtgtttctgaaaataaaagtt-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545  108792 154 +   227596 GA-AACATACTTGGAAAGTATCATAATCGGTTCGGAAACACCATTTTCGGAAGGATCAAGATACGCCACTCGAATGTATCGGAAGTGAAATTGTTTCACCGAAGAAGGGACACTTATACTTCCAGAAAACACATTCCTG-CAAAACGTGGTAAAGT
i caeJap4.Scaffold17545 I 1056 C 0

a score=76963.000000
s ce10.chrX             3110432 412 + 17718866  
s cb4.chrX              8161771 422 + 21540570  
i cb4.chrX              I 189 C 0
s caeRem4.Crem_Contig0   288702 375 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   387750 394 - 33334924  
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1463526 387 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545  108946 412 +   227596  
i caeJap4.Scaffold17545 C 0 I 30

a score=-8418.000000
s ce10.chrX             3110844 41 + 17718866 G-------GAAAAAAAGTTGAATGATTATTTTTTCTTT--------------TTTCTTCTTC
s cb4.chrX              8162193 36 + 21540570 a-------------aggttctat--tcatttttttctt-----------tcattggCTCTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   289077 43 -  4500979 -----------------TTTGAT--TCAATTTCTATGTGTGAAGGGAACCTAGTGACTCCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   388144 20 - 33334924 G-------------AGGTTGGAT-----------------------------GCTACCCCTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1463913 32 +  4147112 gatgaaaagacaAAAGGTCTGG------------------------------GTTACCCTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  109358 30 +   227596 I

a score=116921.000000
s ce10.chrX             3110885 722 + 17718866  
s cb4.chrX              8162229 870 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   289120 847 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   388164 708 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1463945 806 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  109388 839 +   227596  
i caeJap4.Scaffold17545 I 30 I 398

a score=-6304.000000
s ce10.chrX             3111607 38 + 17718866 ttttaaaattaaatCTGGAATTTTTAGGTCTACAAATA
s cb4.chrX              8163099 13 + 21540570 ACTTGAATCAACA-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   289967 13 -  4500979 ACTGCACCCAACA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   388872 18 - 33334924 --------------------ttgAAAGACGCAAAAATA
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1464751 34 +  4147112 ACTTGAATCAACACTT----TTCGAAGACATGCAAATA
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17545  110227 398 +   227596 I

a score=-5788.000000
s ce10.chrX             3111645 27 + 17718866 ATTATTTCTCACGAGTTTACCATTACA--------
s cb4.chrX              8163112 19 + 21540570 ----------------CTTCTCTTCTTCCCAGTCT
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   289980  5 -  4500979 ----------------TTAAA--------------
i caeRem4.Crem_Contig0  C 0 I 59
s caeSp111.Scaffold629   388894 10 - 33334924 ----------ATGAGTTTAC---------------
i caeSp111.Scaffold629  I 4 C 0
e caePb3.Scfld02_0      1464785 41 +  4147112 I
e caeJap4.Scaffold17545  110227 398 +   227596 I

a score=0.000000
s ce10.chrX             3111672 17 + 17718866 AAAAGTTATCCTATGAA
e caePb3.Scfld02_0      1464785 41 +  4147112 I
e caeJap4.Scaffold17545  110227 398 +   227596 I
e cb4.chrX              8163131  7 + 21540570 I
e caeSp111.Scaffold629   388904  0 - 33334924 C
e caeRem4.Crem_Contig0   289985 59 -  4500979 I

a score=-7539.000000
s ce10.chrX             3111689 78 + 17718866 AATATATTGTGATACATCTACTACATAAGTGACCAAAAATTG-----TTTCCAATAAGTTTTCTATTCAGGCTTAGAAAAGCA----
s cb4.chrX              8163138 51 + 21540570 -------------------------AATACGA----CAACTGTTGCCCgtccgaaaattttt-------gattttgacaaaaaaacc
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold629   388904 59 - 33334924 AAAATGCCGGGAT----------AAAGAGAGG--AACAACGG-----CGTTTCAAGGAATTT-------GAGTACACACTGCA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1464826 57 +  4147112 AATAGATTGTAAT----------CAAAAGTGT----TCATTG-----CCATCGATCGGTTTT-------AAATTCGAAAAGTA----
i caePb3.Scfld02_0      I 41 I 320
e caeJap4.Scaffold17545  110227 398 +   227596 I
e caeRem4.Crem_Contig0   289985 59 -  4500979 I

a score=-1607.000000
s ce10.chrX             3111767 19 + 17718866 CTAATCCTAA---GCTTAATAG
s cb4.chrX              8163189 10 + 21540570 CCCACCCTGA------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   388963 20 - 33334924 CTCAACATTAAACATTTGAA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1464883 320 +  4147112 I
e caeJap4.Scaffold17545  110227 398 +   227596 I
e caeRem4.Crem_Contig0   289985 59 -  4500979 I

a score=-16735.000000
s ce10.chrX             3111786 146 + 17718866 TTAATATTTTTTGGGACTACACAAGTATCCCA------AATGACTCTGGGAAAAATGTTAGC--------AAAGTGACAATGTGCCGACATTTTGAGTGCACATTGCACTCTACACTGGACACTTCTCATCGCTTCT----------CAATTTAATG-TAAACATAGAGGC
s cb4.chrX              8163199  69 + 21540570 ---AAACTTTTT--------------------------ACTGACTTTGAAAAGCAGAGTTAC--------GAGACTTC------------------------------------------------------TTGCT----------CGTTATGAAG-caaaaattgagtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   290044  84 -  4500979 CTGACACTTTTC--------------------------GGGAA---GGAACAAAAGATATTG--------AGGACTCCCACA-------------------------------------------------GTTGTTCCGACACCAACGCTATTTAT-CTATAAATAATGT
i caeRem4.Crem_Contig0  I 59 I 3
s caeSp111.Scaffold629   388983 114 - 33334924 CTAACACTTTTCCTTGGCATGCAAATATCGCAACTGCTGCGAACAATAGGAAACAGAgatagagaagagaagaactgCAATGAA--------------------------------------------AACGTTCAT----------CGGAATCGATACAATCATCAA---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1464883 320 +  4147112 I
e caeJap4.Scaffold17545  110227 398 +   227596 I

a score=-7708.000000
s ce10.chrX             3111932 106 + 17718866 TAGACGGAAACTTAATCGGGT-------TTGTA---TGACGGACAATCACAACGAAGAATAT-----------------AAATGAGTGTAAACCTCGTGAAAGGTTCGAATTCAACGTTTCAAATTTGATAT-A
s caeRem4.Crem_Contig0   290131 100 -  4500979 ------ATTTATTGACTT----------TTGGA---TAAAAAATACTCAAGTTGTCGATTATCTTTCGTTTGTTCTGTTCAACAAGTCAGAACT----------TTCGAA---AGTGTTCAAAACTTGATTG--
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   389097  96 - 33334924 -ATACAAGATTTTAATCTGTATGTCAAATCGAAATCTAAAAAACGC-CAACATATCAAATtgcaaacatttg-------aaacaagCC----------------------------GTTTAAACTTTGGGTTT-
i caeSp111.Scaffold629  C 0 I 3
e caePb3.Scfld02_0      1464883 320 +  4147112 I
e caeJap4.Scaffold17545  110227 398 +   227596 I
e cb4.chrX              8163268   0 + 21540570 C

a score=-1160.000000
s ce10.chrX             3112038 7 + 17718866 GCCATTG
s caeRem4.Crem_Contig0   290231 4 -  4500979 GTCA---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   389196 7 - 33334924 TTCTTTA
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1465203 7 +  4147112 GTcgcaa
i caePb3.Scfld02_0      I 320 C 0
e caeJap4.Scaffold17545  110227 398 +   227596 I
e cb4.chrX              8163268 0 + 21540570 C

a score=-753.000000
s ce10.chrX             3112045 22 + 17718866 AAAAATGCTTTCTATCCAACAA
s cb4.chrX              8163268  5 + 21540570 -----------------aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   290236  5 -  4500979 -----------------AACAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   389203 12 - 33334924 GAAAAT----------TAACAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1465210 12 +  4147112 aaatgt----------caaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  110227 398 +   227596 I

a score=944568.000000
s ce10.chrX             3112067 961 + 17718866  
s cb4.chrX              8163273 989 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   290241 967 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   389215 938 - 33334924  
i caeSp111.Scaffold629  C 0 I 28
s caePb3.Scfld02_0      1465222 940 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  110625 951 +   227596  
i caeJap4.Scaffold17545 I 398 C 0

a score=-7511.000000
s ce10.chrX             3113028 25 + 17718866 TTGAATAGAATA-------TTAGGTGAAATCT
s cb4.chrX              8164262 29 + 21540570 ---attaccAAGTTTCCGAGGAAGGGGAGTTT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   291208 21 -  4500979 ---CATGAAATGCGT--------GAAAAGTAT
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0      1466162 13 +  4147112 -------------------TAAAGAGAAATTT
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17545  111576 26 +   227596 -----TTCGATAATTTTG-TTTCAAACAGTCT
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   390153 28 - 33334924 I

a score=1274963.000000
s ce10.chrX             3113053 1341 + 17718866  
s cb4.chrX              8164297 1357 + 21540570  
i cb4.chrX              I 6 T 1392
s caeRem4.Crem_Contig0   291238 1353 -  4500979  
i caeRem4.Crem_Contig0  I 9 I 6
s caeSp111.Scaffold629   390181 1343 - 33334924  
i caeSp111.Scaffold629  I 28 C 0
s caePb3.Scfld02_0      1466189 1347 +  4147112  
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17545  111602 1432 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-472.000000
s ce10.chrX             3114394 3 + 17718866 TTT
s caeSp111.Scaffold629   391524 1 - 33334924 --A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1467536 1 +  4147112 --A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  113034 3 +   227596 TTC
i caeJap4.Scaffold17545 C 0 I 40
e cb4.chrX              8165654 1392 + 21540570 T
e caeRem4.Crem_Contig0   292591 6 -  4500979 I

a score=-7764.000000
s ce10.chrX             3114397 26 + 17718866 AAGAGAATGTTTAACAAAATATGT---TT-
s cb4.chrX              8164262 29 + 21540570 attaccAAGTTTCCGAGGAAGGGGAGTTT-
i cb4.chrX              T 1392 I 1390
s caeRem4.Crem_Contig0   292597 26 -  4500979 GATACAGTACTTCCCAACAATCGG---TT-
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   391525 19 - 33334924 GCAACAA--------ATCAATCGG---ATC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1467537 22 +  4147112 CAAACAA-----CCTAGAAATGTT---TTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  113037 40 +   227596 I

a score=433.000000
s ce10.chrX             3114423 7 + 17718866 GGAAAAT
s caeSp111.Scaffold629   391544 4 - 33334924 ---AGAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1467559 4 +  4147112 ---AGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  113037 40 +   227596 I
e cb4.chrX              8164291 1390 + 21540570 I
e caeRem4.Crem_Contig0   292623 0 -  4500979 C

a score=479000.000000
s ce10.chrX             3114430 889 + 17718866  
s cb4.chrX              8165681 926 + 21540570  
i cb4.chrX              I 1390 C 0
s caeRem4.Crem_Contig0   292623 907 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   391548 866 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1467563 854 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  113077 913 +   227596  
i caeJap4.Scaffold17545 I 40 I 20

a score=-8348.000000
s ce10.chrX             3115319 22 + 17718866 TTTTCCTTAAATGGAGTGTCTC
s cb4.chrX              8166607  7 + 21540570 -----------AACAACA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   293530 18 -  4500979 TTAAC----GTATCAATATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   392414  3 - 33334924 -------------------TGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1468417 18 +  4147112 ATGGC----AAACAATCATTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  113990 20 +   227596 I

a score=224104.000000
s ce10.chrX             3115341 545 + 17718866  
s cb4.chrX              8166614 612 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   293548 620 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   392417 615 - 33334924  
i caeSp111.Scaffold629  C 0 I 336
s caePb3.Scfld02_0      1468435 624 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545  114010 528 +   227596  
i caeJap4.Scaffold17545 I 20 C 0

a score=-6542.000000
s ce10.chrX             3115886 52 + 17718866 tcaatatacacgcacaaacattaactca-caaacacacacacacacCG-CACTC--
s cb4.chrX              8167226 17 + 21540570 --------------------------ca----------aaaaaaacgt-cGCTC--
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   294170 18 -  4500979 -------------------------TCG----------ACACACACGT-CGCTC--
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1469061 28 +  4147112 -------------------------TCGCCACGCAAATACACACAAGT-TGATT--
i caePb3.Scfld02_0      I 2 I 4
s caeJap4.Scaffold17545  114538 54 +   227596 -taacacacacacacacacacattgaca-cacacaaacacacacacatacgcacac
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   393032 336 - 33334924 I

a score=106029.000000
s ce10.chrX             3115938 575 + 17718866  
s cb4.chrX              8167251 595 + 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   294188 600 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   393368 608 - 33334924  
i caeSp111.Scaffold629  I 336 C 0
s caePb3.Scfld02_0      1469093 600 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17545  114592 541 +   227596  
i caeJap4.Scaffold17545 C 0 I 76

a score=8105.000000
s ce10.chrX             3116513 62 + 17718866 C------------CGAAAGTTTTCAATGATAAAATATA-G-----AACAACACGAAGATGAAAAGGCGCA-----GTCGCTAGTC
s cb4.chrX              8167846 74 + 21540570 cttctttacagaaaaaaagtt---gatgatAAAAGACA-AGAGAGAATAACAAAATATTCGAGAAGAAAG-----G--GGTTGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   294788 64 -  4500979 C----------ACAAAAACTT---GAtgataaaagaag-a-----aataacaaGATGATGGAAAGAAGAATACTCG--GGTTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   393976 58 - 33334924 c------------acaAAGTT---GATGATAAAAACGGCC-----AAAAACAcaatgatgaaaagagaaa-----g--agtagTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1469693 61 +  4147112 tct--------cgacaAAGTA---GATGATAAACGAAG-C-----AAAATCAcaatgatgaaaaagagaa-----g--ggtTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  115133 76 +   227596 I

a score=26340.000000
s ce10.chrX             3116575 119 + 17718866 AA--TCGTTCTGAAGATCAAA-CTAGTGGCCGGA-------------GTAAATGGGAGGAGTTGGAAAATAATCAACGAGAAAA-----GTGTT--TTTCATT----GACATCAAAGAATGTTTTATATCAGTTATCACTGATCAC
s cb4.chrX              8167920 126 + 21540570 GA----------AAGATCAAACCCGGGTGGAGAAGATTGGGAATAAAGGAGGcggggagaa-aaaagaagaaccgagaagaaaa-----aagttaatttcgGT----GACCACAGAGAATGTTCGATATCACTTATCACAGATCAC
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   294852 115 -  4500979 GG----------AAGATCAAAACTGGTGGCAGGAAAACTG-------GGAGGggggaagag-aagagaataATCGGATAGCACA-----GAG----TTTCATT----GACATCAAAGAATGTTTGATATCACTAATCACAGATCAC
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold629   394034 127 - 33334924 GAA-GTGATGAGAAGATCAAA-CTGGTGGTAGGAAAC-----------AAAATGGGAGGAG-AATCGAATAATCGAGAATACCCCCTCTAGG----TTTCAATGACAGACAACAGAGAATGTTTCATATCACTTATCACTGATCA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1469754 103 +  4147112 GA----------AAGATCAAG-CTGATGGAAGAAAAT---------------TGGGAGGAG-TGTAGAATAATCGAGA-----------AAC----TTCCAGTGATAGACAACATAGAATGTTTCATATCACTTATCACAGATCA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  115209 100 +   227596 --AACCGAGCCTTAGAGAAGA-CTGGCGGGTCAAATG----------------GGGAGGAG-CGATGGATTCTC----------------------CTTCCAA----GACAACAAAGTATGTTTCATATCACTTATCAATGATCAC
i caeJap4.Scaffold17545 I 76 I 3088

a score=-1612.000000
s ce10.chrX             3116694 28 + 17718866 ------TAGTCACTAGTTTTTTCAATTTCTGAAA
s cb4.chrX              8168053 34 + 21540570 TGATCAGACAAACAAGGTTTTTAAATCACATAAA
i cb4.chrX              I 7 I 16
s caeSp111.Scaffold629   394161 32 - 33334924 --CACCGATTTTCGTgtgttcttctctttgtAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1469857 27 +  4147112 --CCCCGATCTTCGTGTGTTCTCAC-----TAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  115309 3088 +   227596 I
e caeRem4.Crem_Contig0   294967 20 -  4500979 I

a score=-108833.000000
s ce10.chrX             3116722 706 + 17718866  
s cb4.chrX              8168103 896 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   294987 661 -  4500979  
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold629   394193 498 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1469884 670 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  115309 3088 +   227596 I

a score=77082.000000
s ce10.chrX             3117428 505 + 17718866  
s cb4.chrX              8168999 524 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   295648 527 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   394691 499 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1470554 508 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  118397 563 +   227596  
i caeJap4.Scaffold17545 I 3088 C 0

a score=1084108.000000
s ce10.chrX               3117933 886 + 17718866  
s cb4.chrX                8169523 826 + 21540570  
i cb4.chrX                C 0 I 41
s caeRem4.Crem_Contig0     296175 882 -  4500979  
i caeRem4.Crem_Contig0    C 0 I 38
s caeSp111.Scaffold629     395190 877 - 33334924  
i caeSp111.Scaffold629    C 0 I 43
s caePb3.Scfld02_0        1471062 885 +  4147112  
i caePb3.Scfld02_0        C 0 I 40
s caeJap4.Scaffold17545    118960 877 +   227596  
i caeJap4.Scaffold17545   C 0 I 45
s caeAng1.scafRNAPATH2774     369 834 -    15448  
i caeAng1.scafRNAPATH2774 N 0 C 0

a score=0.000000
s ce10.chrX               3118819 37 + 17718866 GCATACCTTAACAAAAGTTCTACAATTAAATGTCTCT
e caeAng1.scafRNAPATH2774    1203  0 -    15448 C
e caePb3.Scfld02_0        1471947 40 +  4147112 I
e caeJap4.Scaffold17545    119837 45 +   227596 I
e cb4.chrX                8170349 41 + 21540570 I
e caeSp111.Scaffold629     396067 43 - 33334924 I
e caeRem4.Crem_Contig0     297057 38 -  4500979 I

a score=4742382.000000
s ce10.chrX               3118856 3101 + 17718866  
s cb4.chrX                8170390 3095 + 21540570  
i cb4.chrX                I 41 I 38
s caeRem4.Crem_Contig0     297095 3095 -  4500979  
i caeRem4.Crem_Contig0    I 38 I 41
s caeSp111.Scaffold629     396110 3094 - 33334924  
i caeSp111.Scaffold629    I 43 I 40
s caePb3.Scfld02_0        1471987 3102 +  4147112  
i caePb3.Scfld02_0        I 40 I 37
s caeJap4.Scaffold17545    119882 3048 +   227596  
i caeJap4.Scaffold17545   I 45 I 48
s caeAng1.scafRNAPATH2774    1203 3258 -    15448  
i caeAng1.scafRNAPATH2774 C 0 C 0

a score=0.000000
s ce10.chrX               3121957 41 + 17718866 TAAATTAAAAAATTTACAACTTATAAGAAGTCACTATAATT
e caeAng1.scafRNAPATH2774    4461  0 -    15448 C
e caePb3.Scfld02_0        1475089 37 +  4147112 I
e caeJap4.Scaffold17545    122930 48 +   227596 I
e cb4.chrX                8173485 38 + 21540570 I
e caeSp111.Scaffold629     399204 40 - 33334924 I
e caeRem4.Crem_Contig0     300190 41 -  4500979 I

a score=701275.000000
s ce10.chrX               3121998 734 + 17718866  
s cb4.chrX                8173523 771 + 21540570  
i cb4.chrX                I 38 C 0
s caeRem4.Crem_Contig0     300231 741 -  4500979  
i caeRem4.Crem_Contig0    I 41 C 0
s caeSp111.Scaffold629     399244 750 - 33334924  
i caeSp111.Scaffold629    I 40 C 0
s caePb3.Scfld02_0        1475126 763 +  4147112  
i caePb3.Scfld02_0        I 37 C 0
s caeJap4.Scaffold17545    122978 741 +   227596  
i caeJap4.Scaffold17545   I 48 I 38
s caeAng1.scafRNAPATH2774    4461 632 -    15448  
i caeAng1.scafRNAPATH2774 C 0 C 0

a score=-21041.000000
s ce10.chrX               3122732 35 + 17718866 CAACATTTTGA-------TGAACTGAATACATATGAATAATC-------------
s cb4.chrX                8174294 29 + 21540570 tga----gctg-------aaatttgaacctGT-TGTAT-ATA-------------
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     300972 30 -  4500979 tgg----gtTACTGCATTAGATTCTAAC-------TAT-GCA-------------
i caeRem4.Crem_Contig0    C 0 C 0
s caeSp111.Scaffold629     399994 33 - 33334924 tattgttATTA-------GGAATGCAGTAAAT-TAAGT-AGT-------------
i caeSp111.Scaffold629    C 0 C 0
s caePb3.Scfld02_0        1475889 32 +  4147112 cagtaTTATTA-------AGGTCGATGTATTT-TGTG--ACT-------------
i caePb3.Scfld02_0        C 0 C 0
s caeAng1.scafRNAPATH2774    5093 45 -    15448 -gttgttttta-------ttgtttatGTTTTG-TTTAT-ATAAGATATAATAACT
i caeAng1.scafRNAPATH2774 C 0 C 0
e caeJap4.Scaffold17545    123719 38 +   227596 I

a score=4194740.000000
s ce10.chrX               3122767 2804 + 17718866  
s cb4.chrX                8174323 2800 + 21540570  
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     301002 2805 -  4500979  
i caeRem4.Crem_Contig0    C 0 C 0
s caeSp111.Scaffold629     400027 2806 - 33334924  
i caeSp111.Scaffold629    C 0 I 30
s caePb3.Scfld02_0        1475921 2813 +  4147112  
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    123757 2803 +   227596  
i caeJap4.Scaffold17545   I 38 I 7
s caeAng1.scafRNAPATH2774    5138 2917 -    15448  
i caeAng1.scafRNAPATH2774 C 0 C 0

a score=-11655.000000
s ce10.chrX               3125571 33 + 17718866 ATCAGACTGTCAAATGTCTT--TAGTGATTTTAAG-----------------
s cb4.chrX                8177123 34 + 21540570 attagaatGACGGTTGGTCTG-GAATAGTTTCTAG-----------------
i cb4.chrX                C 0 I 2
s caeRem4.Crem_Contig0     303807 35 -  4500979 ttcaaaatttcaatcaaacttCCAATAAATTGTTG-----------------
i caeRem4.Crem_Contig0    C 0 C 0
s caePb3.Scfld02_0        1478734 34 +  4147112 -atgagTTGATGGTTTGATGCTTTagaaattttga-----------------
i caePb3.Scfld02_0        C 0 I 2
s caeJap4.Scaffold17545    126567 35 +   227596 TTGAGTGTGTgggtttatttatttatttttttcaa-----------------
i caeJap4.Scaffold17545   I 7 I 5
s caeAng1.scafRNAPATH2774    8055 36 -    15448 ----------------atttgataataattttccaattctagATAATAAAAT
i caeAng1.scafRNAPATH2774 C 0 C 0
e caeSp111.Scaffold629     402833 30 - 33334924 I

a score=183704.000000
s ce10.chrX               3125604 217 + 17718866 TACCTTGATGTGTTCGCTAGCGAAATGATTGTGTTGGATCATAGCGTTTCCGGTCTTGTCGAGGTTGGCGATGGTCTTAGCGTGAGCTTGAACCTCAGCTTCGAACGCTTCATGCTTCTGGATCTTGGCCTGAAA------ATGTTTTATGATTTACATTTGATCATACTTTCATTTTGAT----------------GTAAAAAAATTTTCTCTTTCAATTCATGC--TTCAAAACTAGTC
s cb4.chrX                8177159 209 + 21540570 TACCTTGATGTGATCGCTTGCGAAATGATTATGTTGGATCATGGCGTTTCCGGTCTTATCGAGGTTGGCAATGGTCTTGGCGTGAGCCTGCACCTCAGCTTCGAACGCTTCATGCTTTTGAATCTTGgcctgaaa---atcatttttgttg-------ttttgttgttctttttttgcttc------------a-gcTTAATCcgattt-ctttctttct--------tctaAAACCAGTT
i cb4.chrX                I 2 C 0
s caeRem4.Crem_Contig0     303842 208 -  4500979 TACCTTGATGAACTCGTGGGCGAAATGTTGATGTTGAATCATGGCGTTTCCGGTCTTATCGAGGTTGGCAATGGTCTTAGCGTGAGCCTGAACCTCAGCTTCGAACGCCTCATGTTTCTGGATCTTTgcctgaaaaatatcaaattctATG-------TCTGTTTCCACTTTT------------------------TTAATCCGATTTGCTCTTTTTATACGTAA--TTCATAACCAGTT
i caeRem4.Crem_Contig0    C 0 C 0
s caeSp111.Scaffold629     402863 209 - 33334924 TACCTTAATGTGATCGCTGGCGAAATGGTTATGTTGGATCATGGCGTTTCCGGTCTTATCGAGGTTAGCGATGGTTTTAGCGTGAGCTTGAACCTCGGCTTCGAACGCTTCATGCTTCTGGATCTTGGcctgaaa------aagtt------------tctgttttcacTTCATCCGTTTC------------ATTCATAATCcgatttgctctttttctttttaa--tccCAAACCAGTT
i caeSp111.Scaffold629    I 30 I 57
s caePb3.Scfld02_0        1478770 214 +  4147112 taccttgaTGTGATCACTTGCGAAATGGTTATGTGCGATCATGGCGTTTCCGGTCTTATCGAGGTTAGCAATGGTCTTAGCGTGAGCTTGAACCTCGGCTTCGAACGCTTCATGCTTCTGGATCTTGGCCTGaaa------aggtt------------tttgttttcattttgttctctacaacatttttcgaatgtaTAATccgattttctcaattccctC---A--ACCCAAACC----
i caePb3.Scfld02_0        I 2 C 0
s caeJap4.Scaffold17545    126607 174 +   227596 tactCTGATGATGTCACTGGCGAAATGATTATGTTGGATCATGGCATTTCCGGTTTTATCGAGGTTGGCAATGGTCTTGGCGTGTGCCTGAACCTCGGCTTCGAAAGCCTCATGCTTTTGGATCTTGGcctgaaa------ataat------------tttatgcTAAATATTTACTTTTC------------------AATAAGTACTG-------------------------------
i caeJap4.Scaffold17545   I 5 C 0
s caeAng1.scafRNAPATH2774    8091 191 -    15448 TACCTTGATGATATCACTTGCAAAATGATTGTGTTGAATCATCGAATTTCCGGTCTTATCAAGATTGGCAATGGTTTTGGCGTGAGCTTGAACTTCAGCTTCAAAGGcttcatgtttttgaatcttGGCCTGAAA------AG---------------TTTactttaatatttttctcatc-----------------------------caTTAGTAATTTGTGAGTTATATAACCAGTC
i caeAng1.scafRNAPATH2774 C 0 C 0

a score=-9860.000000
s ce10.chrX               3125821 24 + 17718866 AACTCTTACTCTCA------TTTTTTTTTC
s cb4.chrX                8177368 10 + 21540570 ----CTCTCTTCCA----------------
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     304050 15 -  4500979 ----TATttcaaca-----------tcatc
i caeRem4.Crem_Contig0    C 0 C 0
s caePb3.Scfld02_0        1478984 19 +  4147112 -----AGTTTTCCA------CTGTTTTGTC
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    126781  5 +   227596 ---------TCCCA----------------
i caeJap4.Scaffold17545   C 0 C 0
s caeAng1.scafRNAPATH2774    8282 23 -    15448 -------TCTCTTAatctatcttttttttc
i caeAng1.scafRNAPATH2774 C 0 I 249
e caeSp111.Scaffold629     403072 57 - 33334924 I

a score=-668.000000
s ce10.chrX               3125845 22 + 17718866 AACCGCTAAACCTAGCAACAGA
s cb4.chrX                8177378 13 + 21540570 ---------ATCCACTTATGTG
i cb4.chrX                C 0 I 25
s caeRem4.Crem_Contig0     304065 22 -  4500979 atcatcatcatccaccAACCCG
i caeRem4.Crem_Contig0    C 0 I 27
s caePb3.Scfld02_0        1479003 22 +  4147112 AACAAATTCATTCATCAaccca
i caePb3.Scfld02_0        C 0 I 26
s caeJap4.Scaffold17545    126786 18 +   227596 ----GTTacaaccaacaaaaaa
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeSp111.Scaffold629     403072 57 - 33334924 I

a score=10900.000000
s ce10.chrX               3125867 49 + 17718866 ----AACATAATCGCCTCATCT--ATCTTCTTAC--------------TCGTCAGTATTACTTATCATT
s cb4.chrX                8177416 57 + 21540570 ----attataatcgCC--------TTTCATCTACTACCGAGTAAGATACTCGGAGGGACGCTTATCACT
i cb4.chrX                I 25 C 0
s caeRem4.Crem_Contig0     304114 51 -  4500979 ----A-AATAATCGCCTCATCT--TTCCGTTTACTAC-----------TCCACAGTATTACTTATCAAT
i caeRem4.Crem_Contig0    I 27 C 0
s caeSp111.Scaffold629     403129 47 - 33334924 ----ACCATAATCTCCACATCT--TTC--TTTAC--------------TCTTAAGTAATACTTATCAAT
i caeSp111.Scaffold629    I 57 C 0
s caePb3.Scfld02_0        1479051 49 +  4147112 ----AATATAATCGTCTCATCT--TTCGGTCTAC--------------TCTTAAGTAATACTTATCAAT
i caePb3.Scfld02_0        I 26 C 0
s caeJap4.Scaffold17545    126804 55 +   227596 aagatttttaatCGCCTTATCTCCCCCCGCTCAG--------------GTATTGgtacaactttttttt
i caeJap4.Scaffold17545   C 0 I 18
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I

a score=-1580.000000
s ce10.chrX               3125916 14 + 17718866 CCAGGCA----TTACAG-G
s cb4.chrX                8177473 13 + 21540570 CCACCAG----TTTCGT--
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     304165 17 -  4500979 CCAGCAA-CCCTTCCGC-A
i caeRem4.Crem_Contig0    C 0 C 0
s caeSp111.Scaffold629     403176 18 - 33334924 CCAGAAGGCCCTTGCGC-A
i caeSp111.Scaffold629    C 0 C 0
s caePb3.Scfld02_0        1479100 19 +  4147112 CCAGGAGACATTTGCGCAA
i caePb3.Scfld02_0        C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeJap4.Scaffold17545    126859 18 +   227596 I

a score=42724.000000
s ce10.chrX               3125930 183 + 17718866 AAACCGGCGGATCAAGTC--AGGTCA-CGTCAGTTGCGATTACGC---------AGTGTCAAGGCCGTG---TACGAACGCCCGACTTTTTATAGATTC------CCGTCTATTACTATATGTATTCA-------TCTCATCTT-----------TC-GATC----GGAACGCATGAT-AAAAAAC----------GGCGGCGAGGATTAATTGGAACCCCCACA------GGAATTTATTGGG
s cb4.chrX                8177486 156 + 21540570 ATCCAATAGGATCAAGAG--GGGTCA-CAATAGTTCCGATTACGCTGTTTGGTATGTGTCAAGGACGACTACTCCGTTCG---TCTTTTTCATCCGTA-------CCG--------------------------TTCCCATCCG-----------TCAGATC----GGGATTTCCGATTAGAAAAC---------TGTCGG------------AAGAGACAGGGG-------AAATTG------
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     304182 190 -  4500979 AACCGAACGGATCAAGAGACAGGTCA-CATCAGTTCCGATTACGC---------AGTGTCAAGGACGCT--CTCCGAACGTTCTTCTTTTCATGCATT-------CCGTCTATTACTATACGTATGATT-CCCTTTCCCGTTCT-----------TC-GATC----GGAATTTACGATaaaaaaa-----------GTCGGTGTGGATTAATTGAGATTCCGCAA-------AAATTTGTCGGG
i caeRem4.Crem_Contig0    C 0 I 136
s caeSp111.Scaffold629     403194 165 - 33334924 AAACGAACGGATCAAGAC--GGGTCA-CATCAGTTCCGATTGCAA---------TGTGTCAAGGACGTT---------CG----TCTTTTCATGCATT-------CCGTCTATTACTGTATATAATTT------CTTTCGACAT-----------CC-GATC----GGAACGTTCGATTAAAAAAC----------ATTGGTGTGGATTAATTGAGATTCGGGAA------TGGA---------
i caeSp111.Scaffold629    C 0 C 0
s caePb3.Scfld02_0        1479119 163 +  4147112 AAATGAACGGATCAAGAC--AGGTCA-CATCAGTTCCGATTACGC---------TGTGTCAAGGACGTT---------CG----CCTTTTCATTTATC-------CCGTCTATTACTATATGT------------CCACTAGTT-----------CC-GATC----GGAACGGTCGAT--AAAAAA----------GTCGGTGTGGATTAATTGAGATTCCGTTATTCCGTTGGA---------
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    126877 216 +   227596 AAACGAACGGTCCAAGAC-CGGGTCACCACCAGTTCCGATCACGC---------AGTGTCAAGGCcacc---------ct-tttcttttttatgcaTTCTTTCTTCCGTCCTATACTATATGTACATATATCCCTTCCCATCATCATCCGTTTTCTC-AATCAGATGGAACGCTCGat-aaaaaatggttttcctcGTTGGTGTGGATTAATTGCAGATTGAAGA------TTGACTAATGTGG
i caeJap4.Scaffold17545   I 18 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I

a score=-11103.000000
s ce10.chrX               3126113 33 + 17718866 TTTTCAGTGTGTTTCA-------------------------TTATAAGTAAAGGTGAA
s cb4.chrX                8177642 16 + 21540570 -------------TAA-------------------------TTATGAATAACGG----
i cb4.chrX                C 0 C 0
s caeSp111.Scaffold629     403359 30 - 33334924 ATTTGACTAAGTGTCA-------------------------TTCTATGTGGTGAA---
i caeSp111.Scaffold629    C 0 I 43
s caePb3.Scfld02_0        1479282 32 +  4147112 ATTTGATGAGATACAAAT-----------------------TACTAACTTGCAAG---
i caePb3.Scfld02_0        C 0 I 6
s caeJap4.Scaffold17545    127093 51 +   227596 AGCTGGGTGGAAATGAAGAGAGGGAAGAGGTCACACACACACTATGTTTGA-------
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeRem4.Crem_Contig0     304372 136 -  4500979 I

a score=-13859.000000
s ce10.chrX               3126146 65 + 17718866 TGATATTAGGAGCAGTAAAAAATTGTT--TCCTCAAA--------GACTTTTTAACTCCTAA--------------TTTCTA------------------GCGCTCA
s cb4.chrX                8177658 21 + 21540570 -----------------------------------AG--------GATTTATATAATTT------------------GGCca-------------------------
i cb4.chrX                C 0 C 0
s caePb3.Scfld02_0        1479320 51 +  4147112 ------TAG------------------------TGGG--------GACTTTTTAGATTC------------------TTCTATAGTAATGTGGTACATCTGTGTCTG
i caePb3.Scfld02_0        I 6 C 0
s caeJap4.Scaffold17545    127144 81 +   227596 -GAAATAAATAGCAAGAAAAAAGTATCAAATTTCAAGATGCTCTTGGCTCTTTAGCTCCTAAACGTAATTTTGAACTTCACA-------------------------
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeSp111.Scaffold629     403389 43 - 33334924 I
e caeRem4.Crem_Contig0     304372 136 -  4500979 I

a score=-24652.000000
s ce10.chrX               3126211  61 + 17718866 --------------------------------------TATCTTCCAAAATGA---CGATATTGTG----------------------------TAAAAAGATTTCATTTTCATCTTTTCTGCTTCCCAG
s cb4.chrX                8177679  21 + 21540570 ----------------------------------------------------------------------------------------------ttcaaaa-atacttttccATCT--------------
i cb4.chrX                C 0 C 0
s caeSp111.Scaffold629     403432  58 - 33334924 --------------------------------------TGTCTGCTAAAATAAATCTGAATGTGTG-----------------------GGCTCTTGAATGAGCTCTATCCCATCTGAC-----------
i caeSp111.Scaffold629    I 43 C 0
s caePb3.Scfld02_0        1479371  45 +  4147112 --------------------------------------------------TACTTCTCAAGTATTG-----------------------GGTACATAAAAG-GTTGTAACCCATCTGAC-----------
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    127225 114 +   227596 TAGGTCCCATGGGTGAAACATGTATGTACAGCGGTGCTTTTGTGACGCAAAGCATTTTACTTTTtataaaaaatgccaaaagcGCATAATGTCCAAATAAGAgcagtggcctag----------------
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeRem4.Crem_Contig0     304372 136 -  4500979 I

a score=175.000000
s ce10.chrX               3126272 19 + 17718866 AAAAT--------------AACTAAGTTAGCAA----------------
s cb4.chrX                8177700 15 + 21540570 ----T--------------AATCAAGTTAGATG----------------
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     304508 19 -  4500979 AAGAT--------------AATCGAGTTACGCA----------------
i caeRem4.Crem_Contig0    I 136 C 0
s caeSp111.Scaffold629     403490 19 - 33334924 AAACT--------------AATTGAGTTAGAAA----------------
i caeSp111.Scaffold629    C 0 I 22
s caePb3.Scfld02_0        1479416 16 +  4147112 AAAAT--------------AATTGAGTTAG-------------------
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    127339 49 +   227596 aaaatgcaagcTCTTCCACGACTAAATTCCGCACGATccgacacagctg
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I

a score=-12137.000000
s ce10.chrX               3126291 26 + 17718866 ------------------------------------------------AATTCA----CATGTACTCCTCT--CTACTCG
s cb4.chrX                8177715 22 + 21540570 ----------------------------------------------------------GGGGaccctcttttctctttcg
i cb4.chrX                C 0 I 5
s caeRem4.Crem_Contig0     304527 11 -  4500979 ----------------------------------------------------------GTGG-----------CTATTCA
i caeRem4.Crem_Contig0    C 0 I 5
s caePb3.Scfld02_0        1479432 18 +  4147112 ------------------------------------------------------------GGTCCATCCCT--TCATACG
i caePb3.Scfld02_0        C 0 I 1
s caeJap4.Scaffold17545    127388 80 +   227596 aaatgagtgtgatcGTAATCCTTTTGAATATGAAGTGTGCACTCGTTTAATTTAATTGAAGGATTTTCTCTTTCTGTCCC
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeSp111.Scaffold629     403509 22 - 33334924 I

a score=-5267.000000
s ce10.chrX               3126317 105 + 17718866 ----------------------------AGCCAATTGTT--TATAAATGT------AAT-----------TGTGCACTACAT-TGCTTTCAGTT--CCTAATCTTCAAGTGAGCA--------------TGCATGTTGGGGGTCGCA------------GATG---CGTTTC----------------TCGAAACGAAGG-------------
s cb4.chrX                8177742 104 + 21540570 ----------------------------ACCCAATTGTT--TATACATGA------A--------------GTACATT--------TTCAAGGC--TCTAATCTTC-----AGCAAGTGGTTG-----TGTCCCTTCGCTGCTCACA------------AAAT---CTGTTT-----------TCCCCtcagaaaaagaa-------------
i cb4.chrX                I 5 C 0
s caeRem4.Crem_Contig0     304543 115 -  4500979 ----------------------------AAACAATTGTTTATATACATAA------AATGTGGATGTA--TGTGCACTG------CTTCTAGCCCTTCTAATCTTTATGTGAGCAAGTGGTCG------GCCCTTTGG-----CACT------------AAAT---CTATT-----------------TCGGAAAGAAGA-------------
i caeRem4.Crem_Contig0    I 5 C 0
s caeSp111.Scaffold629     403531 141 - 33334924 ----------------------------aaacaattgtt--taTACATAA------AATGGGAATGTAATTGTGCACTGCTT-CTCTCTT---C--CCTAATCTTCAAGTGAGCAAGTGGTC-------TTCATTCTG------ACCCCGGTCGCGGAagaagcttcttcttcttc----ttcttcttttcaaaagaaag-------------
i caeSp111.Scaffold629    I 22 I 13
s caePb3.Scfld02_0        1479451 135 +  4147112 ----------------------------AAACAATTGTT--TACACATAAAATGTGAATGGGAATGTAAATGTGCACTGCTT-TTCTTTTAGAC--CCTAATCTTCAAGTGAGCAATTGGCC-------CTCGTTTCG------ACC------------AAAG---CTTTTTCGCC----GTCTTCTATTGAAAAGAAGA-------------
i caePb3.Scfld02_0        I 1 C 0
s caeJap4.Scaffold17545    127468 175 +   227596 AACATATGAGCAatccaaaagaaaaaaaaaacaattgtt--tatGCATAC------A-------TATAAATTCGCACAATGTACATACTCAGCC--TCTAATCTTCAAGTAAGCCCGTCTTCTCTTGCCCTCGCTCCG------GCC------------GGGT---CCCAGTCGCAGATGGGCTCTTTTCGCAGCGAGCAACGGCGTGGATAG
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I

a score=-1212.000000
s ce10.chrX               3126422 27 + 17718866 --CACAGAG-----------AAAAGCGCTGAAGCGAACCA
s cb4.chrX                8177846 19 + 21540570 --ta----------------aaaagag---aatGGGACCC
i cb4.chrX                C 0 I 1
s caeRem4.Crem_Contig0     304658 27 -  4500979 --catagag-----------aaaagagaataatgGGACCC
i caeRem4.Crem_Contig0    C 0 I 6
s caePb3.Scfld02_0        1479586 20 +  4147112 --------------------GCTAGAGAAACAAGGGTCCC
i caePb3.Scfld02_0        C 0 I 6
s caeJap4.Scaffold17545    127643 40 +   227596 AGCAGAGAGACGTGagacaaaaaacaaaagaaaaggaCCA
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I
e caeSp111.Scaffold629     403672 13 - 33334924 I

a score=14873.000000
s ce10.chrX               3126449 216 + 17718866 CTCAAATCAATATATTTT------------------------TGCTGCTGCGCC-TTTGTC---GT---TGCTCCCAAAA------GACATTTG------------------------------TGTGCCCCCAAACAAGGCAG-CAGAAGAAAGGGGTCCGAGT-----------GTC---CCCCCGAGGGAAAATGAACCAAG-AGAAAAGAATTGTGCG------------------AGTTGTCGTCAAAA----AGGATTGAGAATGGAAAGCTGGGGACCAACCA----------------------------------------------------------CAGAAAATTTATGTTTTAGATAAC--TTTGAAA
s cb4.chrX                8177866 277 + 21540570 ------CTAATAC-TTTTTGTTGGTgcgtgtgtatgtgtgtgtgc-gCTGCGCC-TCTATCTGTGTCCCCATTGCCCAAAAACGATGGCGGCTGAGCTCCCCATGCTCTACAACAACGTTTCACTACGCCCACAAACAAGGAAA-GAA------------AGAATGGAACCCAAAAGCTGGAGTCTCAAGGGAAAATAaacgaag-aggaagaagaggagttGGTGTGCGCGGAAAGAAGAGTTGTcgtcaaaa----aaag-----------------agaggggacca----------------------------------------------------------aaaacattttcaattttctggagC--TGGTGAA
i cb4.chrX                I 1 C 0
s caeRem4.Crem_Contig0     304691 228 -  4500979 CTCAAATCAATAC-TTTT------------------------TGA-GCTGCGCC-TCTATCTGTGT---CAATGCCCAAA----ACGGCGGCTG----------TCTCTGCA------------TTTGCTC-CAAACAAGGAAA-GAG---------CCCCGAGTCGCCCACAAAACTC---GTCTCAAGGGAAAATAAACGGAG-AGGAAGGAATTGCGT-------------------AGTTGTcgtcaaaa----aaagaggaaaaagggaCCAACAGAGGggacta----------------------------------------------------------aaaa-attttcaattttcgagtgtGGTAGTGAA
i caeRem4.Crem_Contig0    I 6 C 0
s caeSp111.Scaffold629     403685 232 - 33334924 CTCAAATCAATAC-TTTT------------------------TGA-GCTGCGCC-TCTATATGGGT---CCCCACAAAAA----GAGGCGGCTG----------CCActgc------------tttttctt-cgaacAAGAGAGCTAA---AGAAGGACCCAAGTCGCCCACAAAGCTT---GTCCCAAGGGAAAATAAACGGAG-GGGAAAGAATTGCG--------------------AGTTGtcgtcaaaa----aaaga-gaaagagggacCATAAAAAGAGTC------------------------------------------------------------AAatacatttcaatttcaactaGTGTCTGTGAA
i caeSp111.Scaffold629    I 13 C 0
s caePb3.Scfld02_0        1479612 286 +  4147112 CTCTAATCAATAC-TTTT------------------------TGA-GCTGCGCC-TCTATCTGTGC---TTTTCCCAAAA-----AGGCAGTTG----------TGTATGTA-----TGTGGGCTGTTTCc-caaacaagaaaa-gag---agagggacCCAAGTCGCCCACGAAACTC---GCCCCAAGGGAAAATAAACCAAGAGGAAAAGAATTGTG--------------------AGTTGtcgtcaaaa----aaaga--aagaagggaCCAGAAAAGGAGACcagaaactttcaatttcctaGCATAGTAGTTGGGAATGATgaatgattttgagagaatGGAAAACTGGATGAA-----------GGTAGGAAA
i caePb3.Scfld02_0        I 6 C 0
s caeJap4.Scaffold17545    127683 211 +   227596 CTTAAATCAATAC-TTTT---------------------GTGTGG-CTCGCGCCGCCTCTATGTGC---T----CCAAAA----TGGGCGCTTG----------TCTCTGCG---------------TCAC--------------CAG---AGTGGTCCCCTCGCAGCAACAACAACTA---ACCTCAAGGGAAAATAAACCAAG-AGGAAAAGAAAGAATTTGGA--------------AGTTGAGTTGGGAAtttggaatttgaaaaatggaa----tAGGGGGACCA-------------------------------------------------------------ACATTTTCAATT-----------TATCATA
i caeJap4.Scaffold17545   C 0 C 0
e caeAng1.scafRNAPATH2774    8305 249 -    15448 I

a score=372999.000000
s ce10.chrX               3126665 495 + 17718866  
s cb4.chrX                8178143 511 + 21540570  
i cb4.chrX                C 0 C 0
s caeRem4.Crem_Contig0     304919 542 -  4500979  
i caeRem4.Crem_Contig0    C 0 C 0
s caeSp111.Scaffold629     403917 526 - 33334924  
i caeSp111.Scaffold629    C 0 C 0
s caePb3.Scfld02_0        1479898 516 +  4147112  
i caePb3.Scfld02_0        C 0 C 0
s caeJap4.Scaffold17545    127894 473 +   227596  
i caeJap4.Scaffold17545   C 0 C 0
s caeAng1.scafRNAPATH2774    8554 432 -    15448  
i caeAng1.scafRNAPATH2774 I 249 N 0

a score=40854.000000
s ce10.chrX             3127160  83 + 17718866 AAGAA----TGTAACAAAAAAAATCAGAGAGAGCTTT---AG-----AGGATAAATACAACGTGGGAACAAATAAT----GAC-----GAAGTGCGGA-------AAA---------GAA----
s cb4.chrX              8178654  80 + 21540570 ----A----TGC---------------CAAGAGCTTCATAGA-----GGGATAGATACAACGTGGAAACAAATACt----gtggaaaaaaagagagaa-------aga-gaatgctcaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   305461  87 -  4500979 AGGAA----TGCC-----AAAAAACCGCAAGAGCTTT---GG-----AGGATAGATACAACGTGGAAACAAATAAT----GTG-----AGAGAGCGGA-------AAATGACTGCTCAAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404443  92 - 33334924 AAGAA----TGCA----GAAAAAACCGCAAGAGCTTT---GG-----AGGATAGATACAACGTGGGAACAAATAATGACAGTG-----AGAGAGCGGA-------AAATGACTGCTCAAA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480414  88 +  4147112 AAGAA----TGCA----GGAAAAACCGCAAGAGCTTC---GG-----AGGATAGATACAACGTGGAAACAAATAAT----GTG-----AGAGAGCGGA-------AAATGACTGCTCAAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  128367 110 +   227596 aaaaaaaattgcg----agtgAGAGAGATGGAGCTTT---TGTGGATGGGATATACACAACGTGGGAACAAATAAC----GAAGG---AAAGAGAGGATGGCTTCAAATTGTGGCGGAAAAGAA
i caeJap4.Scaffold17545 C 0 I 226

a score=13873.000000
s ce10.chrX             3127243 56 + 17718866 TCACCTG-------------GGAGACAAAAAATAATAGA------------AAATGGGAAAG----CTTGTGGCTTTAATTTAAT-----
s cb4.chrX              8178734 72 + 21540570 ttagatg-------------agcaagagaagaaaacaaagctggaggaaatagagaaaaaaaatgcggaAACGCTTTTATTCATC-----
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   305548 80 -  4500979 TTAGATGAGAGcggaaaggaagaaaaagaagaaaacaaa-----aaggaaaaaagaggaaaagataGAGAAGGCTTTTATTTATC-----
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold629   404535 79 - 33334924 TTAGATGAGGGTaaaat---agaagcagaagaaaacaaa----gaggaaaaagagaggaaga----ggagaagctTTTATTTATCTCGCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480502 78 +  4147112 TTAGATGAGGCCGCaaa---agaagcagaacaaaacaaa----gaggaaaaagagaggaaga----gaag-agctTTTATTTATCTCGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  128477 226 +   227596 I

a score=-3319.000000
s ce10.chrX             3127299 23 + 17718866 AAGCTTATAAATT------CTACGAATGA--------------------
s caeRem4.Crem_Contig0   305645 36 -  4500979 -CACAGC------------CGGTGCATGTAAAACAAAAGGATTGCCAGA
i caeRem4.Crem_Contig0  I 17 I 1
s caeSp111.Scaffold629   404614 30 - 33334924 ACTCTGCTAAATCACTTGCCGGCGCATG-----TA--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480580 34 +  4147112 ACTCTGCCAAATCACTTG-CGGCGCATGTAAAACA--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  128477 226 +   227596 I
e cb4.chrX              8178806 34 + 21540570 I

a score=-16561.000000
s ce10.chrX             3127322  60 + 17718866 --------------------AAATTT--------------ACCAAGAAAGTGT-----TACT--CAAAAAGTATATCATGTC----------------AAAAGTAATTTTAAAAGGT
s cb4.chrX              8178840  45 + 21540570 ------------------GGAATGCT--------------CGAAAAAGAGTTG-----AAAT--GAGA---------------------------------GAGCACCGGAAAAGGG
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   305682  59 -  4500979 ------------------GAGATGCT--------------TAAGCATGAGCcgccaaaaaag--gaaaatag--------tC----------------ATTGAGAACTTCCAGAGGT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   404644  85 - 33334924 AAACAAAAGGATGCCCAAAAAACGCT--------------TGAAAAAGAGGAC-----AATT--GAGAACAGAAGT----TT-------ATCAGCTGGATAGAACACTTCCAGAAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480614 102 +  4147112 AAAGA----GATGCCT-AAAAACGCTTGAAGAGGCTGCGcccaaaaaaagtgt-----atttccCAAAAcagatgt----tcaaaaaaaattag-tggatTGAGCACTTCCAGAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  128477 226 +   227596 I

a score=8357.000000
s ce10.chrX             3127382 65 + 17718866 GGT------------TCCATTTCCAGCCCACACAACTGTCAAC--------------ATTT-TTGAACTGATAACAATATTTC-------------GATGAGTCA
s cb4.chrX              8178885 75 + 21540570 AGT---------------GTTTCCTGCCCACTCACTtgccattttgaattttttt--cactgcATACACGATAACATTGTTTG-------------TATGACTCA
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   305741 84 -  4500979 AGCTGATATTTGA--GGGGTTTCCTGCCTACGCACCTGTCAAC---AGtcttctc--ctct-cttttttgataACAATGTTTG-------------TATGACTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404729 72 - 33334924 AATAGGTAC------GGCGTTTTCTGCCCACACACCTGTCacc---at---------tttt-tcttagaGATAAGAATGTTTG-------------TATGACTC-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480716 79 +  4147112 AGCAGGT--------GGAGTTTCCTGCCCACTCATCtgtcaac---atttttctttctttt-ttttcctgataacAATGTTTG-------------TATGACTC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  128703 76 +   227596 -----------AATTTAACTTTCACGCCCACGTCTATGTCCAA--------------GTTT-TCT---TGATAACAATAAATAGTGCAGAATTGATTGTGAGTCA
i caeJap4.Scaffold17545 I 226 I 1

a score=-5721.000000
s ce10.chrX             3127447 33 + 17718866 GACTAACTCCGACTCCGCCGTTTACA----AGCTGTG
s caeRem4.Crem_Contig0   305825 18 -  4500979 --------------CAGTTG-TTGTA----AACCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404801 29 - 33334924 -ACT--CACTTTTTCGGCAG-TCGTt----aactatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480795 30 +  4147112 -ACTCACACACCCTCAG-GG-TCgta----aattctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  128780 31 +   227596 ----CACTCTCCGACAGTT--TCGCAATGCAGCTGTT
i caeJap4.Scaffold17545 I 1 C 0
e cb4.chrX              8178960 31 + 21540570 I

a score=-26776.000000
s ce10.chrX             3127480  83 + 17718866 -------TTGAAATTG-----AACACACAGCTGTCAGAAA-------------CAGAAGAGACATTA---------CAAAAAAGGGGTTTTGCACA----------------ATGCAGCAAATTTTGAAAATG
s cb4.chrX              8178991  61 + 21540570 -------ttcaaaaaa-----agctcACAGCTGTT------------------------GAACATTA--AAACTGGTAGCATTGCCATTGTTCATC----------------ATG------------------
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   305843  84 -  4500979 -------TCGAAATTG-----AACGCACAGCTgttaggaa-------------aaaaaagaactctC--TAACAGCTTCCAATGCAGCTGCGCGAA----------------ATGC-----GTCTCGTCAAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404830  60 - 33334924 -------ttgaaattaaaaacaaaccaCAGCTGTTGAAAATGGGTTC-----------------------------CAGATGTGATGATGCACACA-------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480825  80 +  4147112 -------tcaaaatttg----aacgcACAGCTGTCAGGAATCGTTTC------AAAGAGCCGCAGCA--CAATCCACAGCTGCAAAGCGGTTCACA----------------TTA------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  128811 104 +   227596 CGGGAGCTCAAA---------AAAGCCCAGCTCCT--TAATCGTTTATGTTTTTAGCAAGTGCACTCGCGGGCGAGACTCGACGAGGCTGGGCGCGGCGTCGGATTTGAAAGATG------------------
i caeJap4.Scaffold17545 C 0 I 22

a score=-2223.000000
s ce10.chrX             3127563 48 + 17718866 ATGAAACAAGAAAGAATATGCTCTCAAAGTGAA-AAAA-GGAGATGACTT
s cb4.chrX              8179052 24 + 21540570 ---aaaggagag----------------------agaa-agaggggTCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   305927 47 -  4500979 -CAAAACGACAAGAC-TATGTTTCAATTGTTCATAGAA-GGAGGGCTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404890 44 - 33334924 -----GCGCCAAGAC-TATGTTTCAATTGTTCGTAGAAgggggggggTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480905 47 +  4147112 -AAACGCGCCAAGGCGTCTGTTTCAATTGTTCGTAAAA--GGAGGCATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  128915 22 +   227596 I

a score=181576.000000
s ce10.chrX             3127611 482 + 17718866  
s cb4.chrX              8179076 536 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   305974 470 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   404934 481 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1480952 475 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  128937 417 +   227596  
i caeJap4.Scaffold17545 I 22 I 540

a score=-1666.000000
s ce10.chrX             3128093 116 + 17718866 CGGA--AGAAGTGAT-----GATGAAAGAGAAAGTGACAGAAATTATTAAAACGGGAAGCGGGAAA--------GCGGGAAGGATAACCGAA-----------AAAACATAACTTCAAAATTTGGAAGT-------AAAAGTGAGTAAA
s cb4.chrX              8179612  72 + 21540570 CGGGGCAGAAGTAATTGG-AAATG-----GAAAGTGACAAA---------------CAACAGGCGA-------------------------------------Ggggaaacacttttttgatgaaaaa-----------ag--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   306444 117 -  4500979 CGGAG-GGAAAtgatttg-aaatgaaatagaaagtgacaaa---------------caacggaaaacaaatccaactggaagaaaaatgaaaatgtgaactATGGCAAAACAATTTGTCTTTGAAAGAT-------TATAG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405415 112 - 33334924 Cg----ggaaatgatttgaaaatgaaattgaaagtgaCAAA---------------CAACgggaaa--------aattgacgaaatcTGGAGA----------GGTTGAGAGATTACTGAATATAAAATGGGTAAAGATAATTATTGAG
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1481427  99 +  4147112 CG----GGAAATGATTTGGAAACGAAATCGAAAGTGACAAA---------------CAACGGGAAA--------AA------AGTAATAGAAA----------ACTATATGAcctttcaaattcaaagt-------gACAGTGATTAAA
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold17545  129354 540 +   227596 I

a score=-3937.000000
s ce10.chrX             3128209  7 + 17718866 TGAGCAA-----------
s cb4.chrX              8179684  7 + 21540570 tga----------ttca-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   306561 17 -  4500979 TGAACATAGCAACATCG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405529  7 - 33334924 -----------AAACCAa
i caeSp111.Scaffold629  I 2 C 0
e caePb3.Scfld02_0      1481526 27 +  4147112 I
e caeJap4.Scaffold17545  129354 540 +   227596 I

a score=-25643.000000
s ce10.chrX             3128216 225 + 17718866 ---------ATTAGAAATTTCTTTGCACAAAAGAATATTCGT-TTTAGTTTAAAAACCACGATACAAAACCTCCAAACTCAAA---TAACTACATCCAC------TTACGCTAAACAACTGAATGATTTAAAACAATAGGGGACCCCATTCTATCAAATCTAAAAGCATCCA-CACAAAAAGCCGAAAAAGG-GATTCTTCAAG----GGCTTTTTTCTTAAG-----TGACATGGTC-AAGCTTTGGTTCATA-----------AC-
s cb4.chrX              8179691 140 + 21540570 ----a-----TTAGGAAAATGT-----------------AGTGGTTGGTCTAGAAAATA----CTATA------------------CGacagagt----------tt-----------ttgaataattcagaGCAATAGAA----------------------------------------------------AAGGCTTCAAT----GGA--ATCCTGTAAGACAATAAACATGGTC-AAGCATTGGTTCAGAGAGCCCTCCTcgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   306578 200 -  4500979 ----AAAT-CTTAAGTATATCTT----AAGCATAACATAAACAATTGATCTGAAacacg----aaaaa------------------gaaaaagac----------ttGAGTTAGACACTTGAATAATTTAGAACAATAGAGTGCTATGCTAC-TCAAATCCAGAAACAGCCC-ACCCA--GATAGATATAAC-AAGCCTCAAAT----GGAGCATTTTGTGAG-----AAACATGGTC-AAGC-TTGGTTCAGA-----------ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405536 191 - 33334924 gctaaaattttcaaagcacTGG---------ATAACgttcgattctgaaatgaaatgta---tACAAA------------------TGACAGGACAGATTA----TTAAGT-------TTCAATCAACTat-----tagatttcaaaaattc----aag--aaaaacagatc-TACTATCAACGGaaacaa--agtttttcgaa----gga-ATTTTTTAGTG-----AGAATTGGTCGAAAC-CTGgttcaga-----------aca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1481553 224 +  4147112 Gctaa----ttcagaaaaacgt----------taactttaaaatttcaagcaaaaaacg----acaaagtc-----actcaaaactttacaacaaaaacTAGTGTTGGAgtaaaacaattgaataatTTATAACAATAGAGtgaaaaaatgcttcgaaGTAAAGAATAGAACATACTA--AACCGGCACAATGAAGGCTTCAAACtcggtt-ttttctttgag-----ataCATGGTC-AAGC-TTGgttcaga-----------aca
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold17545  129354 540 +   227596 I

a score=67352.000000
s ce10.chrX             3128441 110 + 17718866 AAAAGT----GAGCAAACACCGGAAACGGGGAGCCGCGCCAAATCTGTCAAGTG-CCGGATGGAGGCCACCTGCG---------TTCG----AAAACTTCC-----------TGCGGACACA----TGAGTGAAGGACG--------------GCAA
s cb4.chrX              8179831 128 + 21540570 aaaactaataaaacaaACACCGGAAAC-GGGAG-----CCAAATCTGTCAAGTG-CCGGATGGAGGCCACCTGTGCGCCGTTCCTACGTTTAAAAACTTCC-----------TGTGG-----------ACCGAAGGACATTTTTCATGTGGTCGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   306778 117 -  4500979 AAAAGT----GAGCAAACACCGGAAGT-GGGAGCCGATCCAAATCTGTCAAGTA-CCGGATGGTGTCCACCTGTG---------TTCGT---AAAACTTCC-----------TCCGGAC---------ACTGAAGGACATTTTTCATCTGG--GGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405727 117 - 33334924 aaaagt----gGACAAACACCGGAAAC-GGGAGCCAATCTAAATCTGTCAAGTGCCCCGATGGTGACCACCTGTG---------TTCC----GAAACTTCC-----------TGTATGC---------TACCAAGgacatttttcatctga--GAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1481777 116 +  4147112 aaaaga----gaacaaacACCGGAAAC-AGGAGCCGATCCAAATCTGTCAAGTA-CCGGATGGTGGCCACCTGTG---------TTCC----GAAACTTCC-----------TGTGGGC---------AATGAAGGACATTTTTCATCTTG--GAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  129894 120 +   227596 AAAAGT----GAGTAAACACCGGAAAT-GGGATCCGGCTTAAATCTGTCAAGTG-CCGGATGGCGGCCACCTGTG---------TTCT----AAATTATCCGCTCAATGTTTTATGAACGAACGGGTGGATGGaggaaa------------------
i caeJap4.Scaffold17545 I 540 I 1379

a score=8896.000000
s ce10.chrX             3128551 43 + 17718866 TGA------------AGGAGAAGGAAACACA-AATGAAAACTATTAGT--------TCTCTCTC
s cb4.chrX              8179959 55 + 21540570 GAACTTGAGgattgaagagaaaaagaagaca-aatgaAAACTATTAGTTTTTCCTA--------
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   306895 36 -  4500979 GGAC-----------GAAGAGGACGAGGACA-AATGAAAACTATTAGT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405844 33 - 33334924 ---------------TGCGAGTGAGAGGAGACAATGAAAACTATTAGT----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1481893 32 +  4147112 ---------------GGGGAGAGGGAGGACA-AATGAAAACTattagt----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I

a score=5832.000000
s ce10.chrX             3128594 22 + 17718866 GTTTTCGAGTTCGTCACACTCT--
s caeRem4.Crem_Contig0   306931 21 -  4500979 -TTTTCTAGTTCGTCACActga--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   405877 23 - 33334924 -TTTTCGAGTTCGTCAcacaaaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1481925 23 +  4147112 -ttttcaagtttgtcactcagaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180014 13 + 21540570 I

a score=25669.000000
s ce10.chrX             3128616 74 + 17718866 GAGAAGAGG--CAAAGAAATTCGATACAGCTCG--GGGCGACGTTTCGTTGAAGACGGAGGGCAGAGCATCTTTCAAA
s cb4.chrX              8180027 74 + 21540570 aataagaag--aaacgAAATCCGATACAAAACGATGGGAAACGTTTCATATAAG--TGAAAAGGGAGCATCTTCTAGA
i cb4.chrX              I 13 I 1048
s caeRem4.Crem_Contig0   306952 60 -  4500979 atgaagaag--aaacgaaattcGATACGA------GGGAAACATTTCAT----------GGGGTGAGCATCTTCAAGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   405900 60 - 33334924 ---gagaag--aaacgaaattcGATACAAGAA---GGGAAACATTTCAT----------GGGGGGAGCATCTTCAAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1481948 62 +  4147112 ---gagaagaaaaacgaaattcgaTACTAAGA---GGGAAACATTTCAT----------GGAGGGTGCATCTTCAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I

a score=7093.000000
s ce10.chrX             3128690 28 + 17718866 -TTCTTATTTTACGTCAGAATTTGGCATT
s caeRem4.Crem_Contig0   307013 28 -  4500979 -GACTTATTTTACGTCAGTATTTGGCATT
i caeRem4.Crem_Contig0  I 1 I 225
s caeSp111.Scaffold629   405960 29 - 33334924 TACTCTCTTTCACGTCAGTATTTGGCATA
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1482010 27 +  4147112 TGGCCCCTT--ACGTCagtattcaacatt
i caePb3.Scfld02_0      C 0 I 480
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I

a score=592.000000
s ce10.chrX             3128718 63 + 17718866 GA--TGCCAACGGAAGTTTTGTTTGAAATG-AAGAATAAAACATTATAGAAAATAcagtgtgggaa
s caeSp111.Scaffold629   405991 66 - 33334924 GAACTGCGAATATGGAAAACGTTGGAAATATACAAAGATAACATAAGTGAATATAAAGTCTTGGAA
i caeSp111.Scaffold629  I 2 I 151
e caePb3.Scfld02_0      1482037 480 +  4147112 I
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I
e caeRem4.Crem_Contig0   307041 225 -  4500979 I

a score=0.000000
s ce10.chrX             3128781 2471 + 17718866  
e caePb3.Scfld02_0      1482037  480 +  4147112 I
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I
e caeSp111.Scaffold629   406057  151 - 33334924 I
e caeRem4.Crem_Contig0   307041  225 -  4500979 I

a score=14.000000
s ce10.chrX             3131252 6 + 17718866 GTGTTC
s caePb3.Scfld02_0      1482517 6 +  4147112 gTGAAT
i caePb3.Scfld02_0      I 480 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I
e caeSp111.Scaffold629   406057 151 - 33334924 I
e caeRem4.Crem_Contig0   307041 225 -  4500979 I

a score=1138.000000
s ce10.chrX             3131258 32 + 17718866 ATTAAAAATATAATACGATTTCGAGTTTAAAT
s caeSp111.Scaffold629   406208 27 - 33334924 ACT-----AATAGTACAATTCGCTTGTCAGGA
i caeSp111.Scaffold629  I 151 C 0
s caePb3.Scfld02_0      1482523 32 +  4147112 ACTGAAGGGATAGTACACTTTGCCTGTCAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I
e caeRem4.Crem_Contig0   307041 225 -  4500979 I

a score=14815.000000
s ce10.chrX             3131290 129 + 17718866 CCCATCAATCTTTTTCACATTTTGTCATTTTTCTATCATCTTTTCAAAAGGGTGATAGCA---GCGCTACAAAAAAAGATGCAAG-AG-AAACATTAAATTAC-----------------ACAAC-----AAAATTGAGTGGTTCC---ACCAAATATT--
s caeRem4.Crem_Contig0   307266 150 -  4500979 CCCATCAATCTTTATCACATCTTTACATTTCTCTATCATCTTTC-AAATACGTGAAAGTAGG-GTGCCGC--AAAAAGATGCAAACGG-AAGGAGTGAATGAGTGATAATGGAAGGTTACACAACTGTGATAAA------tgttctattaaaaaaaatgtt
i caeRem4.Crem_Contig0  I 225 C 0
s caeSp111.Scaffold629   406235 147 - 33334924 CCCATCAATCTTTATCACATC-TCACTATTCTCtatcatcttcaaaaatgcgAAATCGTAGAGGGGTCGC--AAGAAGATGCAAACAG-AATGGGCAAa-------agacgaaaaga---agaactgaGAACAACTAGGTTATTTTCTAAACAAACATTTG
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1482555 155 +  4147112 CCCATCAATCTTTATCACATCTTTAGAATCTTCTAACATCTTTCAAAATACGTGATTGTAGA-GTGCCGCCAAAAAAGATGCAAACGGAAATGAGTAAATTATTTTGGTTTAGtact---aaaactgaaaaaaa--aagagagtagtTGAACTAAGATATC
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I

a score=-3429.000000
s ce10.chrX             3131419 55 + 17718866 -TTAAAGCGGATCGCTGTTT-----CTCTAATCTTTATAGGTGTGACAGC----TTAATTT-TTGA---
s caeRem4.Crem_Contig0   307416 69 -  4500979 ttagaatGGGAAAGTGGTTAGATGGAACTGATATTTAAATGCGAGAAACTAGAATGAATTTGCTACTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   406384 51 - 33334924 -TGAAATCGGAC--TAATTTGATACAGCGGGT---------CAAGAAGATAG--TAAATTT-TTAT---
i caeSp111.Scaffold629  I 2 I 6
e caePb3.Scfld02_0      1482710 80 +  4147112 I
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I

a score=-11791.000000
s ce10.chrX             3131474  80 + 17718866 --------------GAAAATAAATAAAAAAAAC------------TGTAAAGATCCAAGGAAAAAAGTAA------------------------CCAAAAAA----------------TGAGATTTCACATTTC-----GAACGACATGGA
s caeRem4.Crem_Contig0   307485 125 -  4500979 AAAGCTCGgtagcaaaaaagagaaatatgaaac----gtttttattttaatgaGGCATGTTAAGTGATGAGCTGTAGTCACCTT----------CCtgactt------------ttcaaaatgttgataaCTTCCGGCGATAAAACATGGG
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   406441 118 - 33334924 -------------GAATAAAACATTCATCTAACT---ATGTCTATTGCAAAATCTAAAGTTTGATA-CAAATTATCGACGTTTTTACTGTTATTTCGAAAGT----------------TGAAGTTGTAAACTTCCCGAAAAGTGACAGGAA
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_0      1482790 120 +  4147112 -------------gaaaataactCACAACAATCGGGAGTAGATTTTGCGGAA---AAACTTCTATAGCAACCCATATAC---------------ccaaaagtagaaaaataacttttgtgaAGTCGtaacttttccgaaaagtgACAGGAA
i caePb3.Scfld02_0      I 80 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I
e cb4.chrX              8180101 1048 + 21540570 I

a score=64188.000000
s ce10.chrX             3131554 251 + 17718866 AAA-------ACAAAAAAAATCAACCCAATT-----AACAAAGATTACAACA-AGAGCGATGACAGAGTGAGAAATGAAAACAAG-ACAACAATAAAACCGGA----GAAAACATATGATGGTGGTAAAAGC-----AGTGTCTATAAAAAATTGC-TTTT---CTCTGGGTCCGAAGAGAATC----TCGTCTAATTATT-CAAATGGT-GAGAGACACT------------------TTATCTC-AAG-----------CA-AAGAAAAAA----CTGCCGTTGTTCAACACAGT--TCCATTTATTCAGTT--GAACGGA
s cb4.chrX              8181149 275 + 21540570 aaaacaag------aCAAAT-------GACTTCAATATGAAAGATGGGAACACAAGGCGTTAACAAAGTGAGAaatcaaaacaag-aaaacgtTAATCCTAGATGGTAGAAACATATGGTGGCAGTAAAAACTGGAGAGTGTCTGTGAGCAATTACATTCTTGCATTTGAAA--TACAAATGCT---CCACACCAATTATT-CAGAAGATTCAAAGACACCGGTCA-----------GATGATTCATCAGATgtaaa----aa-aaccgaaaa----atgccGTTGTTCAACACA-TAGTAC-------TGATTTCAAATGAA
i cb4.chrX              I 1048 C 0
s caeRem4.Crem_Contig0   307623 289 -  4500979 aaaacaagaaataaacaAAGATGACAAgacttcaaaaagaaaaatgagaacg-aGAGCGATAACAATGTGTgaaaggaaaacaag-aaagcAATAAATCTGGA----GGAAACATATGGTAGCAGTAAATGT-----GGTGTCTGTGAGAAATTAC-TTCTTGCCAATGAAGCTTCCAAGTGTCTGGCTCCTCCAATTGCT-CGGTGGATCAAAAGACACCGTT---------------TCATTCG-AAGGTATgaatcagaa-aagaaaaaa----atgccGTTGTTGAACATAGTAGTGCATTTTGTAGTATTCGAACGGA
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629   406559 275 - 33334924 ----------GTGAAAAGAGATGACAGCATCGGgacatgaaaaatgagaaca-agAGCGATAACAAAGtgagaaaggaaaacaag-aaaacgatAAATCTGGA----GGAAACATATGGTGGCAGTAAAAAT-----GGTGTCTGTGAGAAATTAC-TTCTTGCCACTGAAC---------GTC-GGATTCTTTAGTTATTGGGATGGATTATCGGACACTGAGTAGTTGAAGGAACGTTGattca---------------ga-gaagaaaaacgctATGCCGTTGTTCAACATAGTAGTGCATTCCTTCGCGTCCGAACGGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1482910 266 +  4147112 ----------GTGGAAAAAGATGACAGCAtt--gacatgaaaaatgagaaca-agagCGATAACAAAGTGggaaaggaaaacaagaaaaacgatAAATCTGGT----GGAAACATATGGTGGCAGTAAAAGT-----GGTGTCTGTGAGAAATTAC-TTCTTCACAGTAGA----------GCC-AGACCCACCAATTATT-CTATGGATCATAGGACACCGAGTAGATGAGTACTGGATGATTCA---------------AACGATTAAAAA----ATGCCGTTTTCTAACATAGTA---CATTCTTTCTGGTCGGAACGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  130014 1379 +   227596 I

a score=141054.000000
s ce10.chrX             3131805 228 + 17718866 TCGCC----------GCG-----AAAGAGG--C-----------AAAGATGAGAGGAATATTATCTCGAGGTCATTTGCCGTTTTGCCTCTCGGATGACACTCGTCTA---TTAGTTTGAA--AG----GAATG-GTT-GTCATTGGAAAGATATGATTCAGCG-TTGTGT--GAGAGTGTCATTGCTCTTAGAGTGTTTGTTGAACCAAAA----AAAAAAACTTATTCTCAAACAAACTCTGGGTTAGAATGCTGGTT---------------------TCTCTATGTTTGTA
s cb4.chrX              8181424 245 + 21540570 CGGGAGTAGATACGGGCGGCAGAAAAGTGGGcagaagaaaagaggaaaatgagGAGGATATTATCTTGAGGTCATTTGTCGTTTCGCATCTCCAATGACACTCACTTCCCATAAGTTTGAA-AAGAGGTGAATG-CCATGT-GTCGAGAAGATATGATTCAGAGCTTTTGT--GAGGGTGTCATTGCTTG--GAGTGTTTGTCGAATGCACAG---AAAAATTCTTA---TCAAACAAACC-----------------TT--------------------ACCTTTGTGTTTGAA
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   307912 223 -  4500979 TCGGA---------GGCGgcaggaaaaagg--aaaagaaaagaggaagatgagGAGGATATTATCTCGAGGTCATTTGTCGTATCGCATCTCCAATGACACTCACctt---taagtttgaa-aaa----gaatg-cCA-GT-ATTGAGAAGATATGATTCAGAG-TTTTGT--GAGGGTGTCATTGCTCT--GAGTGTTTGTTGAATGCACA----AAAACTGCTTA---TCAAACAAACT-----------------TT---------------------TCTTTGTGTTTGTA
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   406834 225 - 33334924 TTGAA---------GGCGGCAGGTAAAAGG--TaagaaaagtggaaagaTGAGGAGGATATTATCTCGAGGTCATTTGTCGTATCGCATCTCCAATGACACTCACCCA---TAAGTTTGAATGAG----GAATGCCCA-GT-GTTGAGAAGATATGATTCAGAG-TTTTGT--GAGGGTGTCATTGCTCC--GAGTGTTTGTTGAATGTACA----AAAACTGCTTA---TCAAACAAACT-----------------TT---------------------TCTCGATGTTTGTA
i caeSp111.Scaffold629  C 0 I 5566
s caePb3.Scfld02_0      1483176 221 +  4147112 TTGGA----------GCGGCAGGAAAAAGG--T-AGGGGAGAGGAAAGATGAGGAGGATATTATCTCGAGGTCATTTGTCGTATCGCCTCTCCAATGACACTCACCTA---TAAGTTTAAA-AAG----CAATG-GCA-GA-GTTGAGAAGATATGATTCAGAG-TTTTGT--GAGGGTGTCATTGCTCT--GAGTGTTTGTTGaatgcaca----aaaaatgctta---tcAAACAAACT-----------------TT---------------------TGTCGATGTTTGTG
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17545  131393 216 +   227596 ---------------TCGGAACGAAGAAAA--C----------GAAGGAGGCGAAGGATATTATCTTGCAATCATTTGTCGTATCGCCTCTCCGGTGTCACTATTCTA---CAAGT------GAG----GACAG-----AT-G----------ATGATTCAGAG-TTTTGTGAGAGGGTGTTACTGCTCC--GAGTGTTTGTCGAATGCACAGGAAAAAACTGCTTA---TCAAACAAAAC-----------------TTTTCTGCCCGCCAGTGTGTATGTTTCAATGCTTGTA
i caeJap4.Scaffold17545 I 1379 I 19

a score=-11543.000000
s ce10.chrX             3132033  76 + 17718866 AGTCA--------GATTTACAAA---------------------ATAATTTA------------TGTTGTCATACAAAAACTGTTAAAGTTAAAtaaaaatttgtaaaaa------tttgtaa
s cb4.chrX              8181679  64 + 21540570 AGT----------GACAAAGGTA---------------------TTAGGTTC------------TGATGGAAGTGAAACAG-TGGTAAGTTGATAgaaatt---------------tcagtaa
i cb4.chrX              I 10 I 8
s caeRem4.Crem_Contig0   308145  80 -  4500979 agt----------gaaaaagaaa---------------------ttaggTTT------------TACTGGCAGTAAGGAAGATtgctgtctgaaaaaaactatgtgATACTGAGCATTTGTAA
i caeRem4.Crem_Contig0  I 10 I 9787
s caePb3.Scfld02_0      1483421  54 +  4147112 AGT-----------------------------------------TTAGGTTA-------------GCTAACAATGGAGAACaagtaaaattgaaacaatta---------------cTTATAA
i caePb3.Scfld02_0      I 24 I 4
s caeJap4.Scaffold17545  131628 101 +   227596 AGTCAAAGGGGATGATGCACAAAAATTATCACTGTATTTATTATGTAGATTGGAATTTCAAACGTGCCAAGAATGAAGAACATGT-------ACACAAATA---------------TGTGTGA
i caeJap4.Scaffold17545 I 19 C 0
e caeSp111.Scaffold629   407059 5566 - 33334924 I

a score=-4555.000000
s ce10.chrX             3132109 171 + 17718866 aaCAA-AACACCAATTAGAAATATAA----------------CATGT----------AAAATGATTTC------------AGATTACAATTGAAAAACTTTA-----AATATCATTT--CAAACT------TTTCCCGCATAGTA-TGTATCTGTTCCGTCA------ATCTGTTGG-----------AAAGTGACTCGCTACTTAATTCCACGGAATGCA---GAATTCATG-GAAGAGATAGA
s cb4.chrX              8181751 218 + 21540570 AGTAGTTAGACCAGTTTGTTATTTCACTCTCTCATGCATGAAAATGT-TGCTTCCGAATGAATGTTCCTTTAGaacgaacaaaaaagaattaagAAATATAT-----AATTACTGCGAGAAAAAT------CTCCCGGTATGTGACCGTATCCATCTTGCCGGGAACTATCTGACGG------------AAATGACTGGTCACATATTTGTAAGGAATGTGTT-GATCTATTG-GAAGAGATAG-
i cb4.chrX              I 8 C 0
s caePb3.Scfld02_0      1483479 158 +  4147112 ------AAGACAATTCT-------------------------AATGT-TG-------AAACACAAtcc-----aacaaa-agaaaaaaactcgaaaatgtgG-----AGTACGGTTCAGTAGAA---------------ACATGATTGTATCTCTTCCATCG------ATCTGACGG------------AAGTGAGAGGACACATATTTGAAAGGAATGTA---GATTCCATA-AAACAGATAGA
i caePb3.Scfld02_0      I 4 I 7156
s caeJap4.Scaffold17545  131729 217 +   227596 AACAATTAAACAAAATGAGTGttta-----------------tatgtatgtatgtgaatacacatttttctaaaa-----acatttgaatttgaaaatattgTAACTACCACATTTCAAAAGGGTATTCTATTTTCTGTATTGCATTGTATCAAATGCGACA------ATCGGTCGGTCGGACGGACAGAAACGAGTTGTCACTTATTCTTGCGGAATGTGTCGAATCTGATGTGAACAGATAGA
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   407059 5566 - 33334924 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=-854.000000
s ce10.chrX             3132280 27 + 17718866 ---ACGCATCGGTGACAG--AAATAAATGTAA
s cb4.chrX              8181969 20 + 21540570 ---------CGGT-AGGG--AGGCGGCCGAAA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17545  131946 32 +   227596 ATGGTCAATTGGCAAGAGTCAAATGAATGCAA
i caeJap4.Scaffold17545 C 0 I 3750
e caePb3.Scfld02_0      1483637 7156 +  4147112 I
e caeSp111.Scaffold629   407059 5566 - 33334924 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=815.000000
s ce10.chrX             3132307 10 + 17718866 ATGACGAATG
s cb4.chrX              8181989 10 + 21540570 ATGACAAATG
i cb4.chrX              C 0 I 8299
e caePb3.Scfld02_0      1483637 7156 +  4147112 I
e caeJap4.Scaffold17545  131978 3750 +   227596 I
e caeSp111.Scaffold629   407059 5566 - 33334924 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=0.000000
s ce10.chrX             3132317 2641 + 17718866  
e caePb3.Scfld02_0      1483637 7156 +  4147112 I
e caeJap4.Scaffold17545  131978 3750 +   227596 I
e cb4.chrX              8181999 8299 + 21540570 I
e caeSp111.Scaffold629   407059 5566 - 33334924 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=397.000000
s ce10.chrX             3134958 9 + 17718866 TCACAAGCA
s caePb3.Scfld02_0      1490793 9 +  4147112 TCGCAATCG
i caePb3.Scfld02_0      I 7156 C 0
e caeJap4.Scaffold17545  131978 3750 +   227596 I
e cb4.chrX              8181999 8299 + 21540570 I
e caeSp111.Scaffold629   407059 5566 - 33334924 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=559.000000
s ce10.chrX             3134967 24 + 17718866 TAATTTGCCAAACTACCAATT--GGA
s caeSp111.Scaffold629   412625 22 - 33334924 TAGTTAGCCAAACCTCAAAAT----G
i caeSp111.Scaffold629  I 5566 C 0
s caePb3.Scfld02_0      1490802 26 +  4147112 TTATCAGGCAAACTTCATGATGTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  131978 3750 +   227596 I
e cb4.chrX              8181999 8299 + 21540570 I
e caeRem4.Crem_Contig0   308225 9787 -  4500979 I

a score=15404.000000
s ce10.chrX             3134991  96 + 17718866 ATCCTCTTTTCAAGTAACACGGTCAGAAAATATCACAACGCCT----------CATCC-ATTGTTTCTGGTCTT---TTTTTTCCCAGGCCGTATGCATACGAACGAATT
s caeRem4.Crem_Contig0   318012 105 -  4500979 ATTCGCCTTACGAGTAGATCAGACAGAAAACATTCCGCCGATTTCTCTCATCCAATCCTTTTGTTTTTGGTCTT---TCTTCGAAAAGACAGTATGCATACGAAC--ATC
i caeRem4.Crem_Contig0  I 9787 C 0
s caeSp111.Scaffold629   412647 107 - 33334924 ATTCGGCTGACAAGAAGTTTTGTTGGACAACAACATAATGTCTTCTTTCATCCTATCC-GTTGTTTTTGGTCTATCTTCTTTATGTCGACAGTATGCATACGAAC--AAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1490828 104 +  4147112 ATTCGCCTTACAAGTAGATTCGATGA--AACACAATAATATATTTTCTCATCACATCC-TTTGTCTCCAGTCTATC-TCTTTACGCGGACAGTATGTATTGGAAC--ATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  131978 3750 +   227596 I
e cb4.chrX              8181999 8299 + 21540570 I

a score=4985.000000
s ce10.chrX             3135087 8 + 17718866 GTGCGACT
s caeRem4.Crem_Contig0   318117 8 -  4500979 GCCCGACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   412754 8 - 33334924 GTGTGACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1490932 8 +  4147112 GGGCGACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  135728 8 +   227596 gCGCGACT
i caeJap4.Scaffold17545 I 3750 C 0
e cb4.chrX              8181999 8299 + 21540570 I

a score=50688.000000
s ce10.chrX             3135095 146 + 17718866 AGAATAGATAAAGCGAGAGACGAGACAGAAAGAACGGGTTTCTTTAG--CGC-----------AATATGACAGTCGCACTCGCCATCCAGCACTCC-----TTCCCTTCCAATCA--------CTTTTG-------------------TTTTGAATCTAAAT----AGAGAATGA----------------------------TGTG--TTAATCTTTCTTTCTC---
s cb4.chrX              8190298 132 + 21540570 AGAATAGATAGAGTGAAACGGGAGAAA-ATAGAACGGGTTT-CTTCG--CGCGGCGGTGCGCAAAAATGACAGTCGCACTCAGTGTCAG---------------------AATCA--------CTTTTG-------------------TTTTGAATCCAAACAGAAAGAGATTCA----------------------------------TTCCTTTTC----------
i cb4.chrX              I 8299 I 110
s caeRem4.Crem_Contig0   318125 136 -  4500979 AGAATAGATAAAGCAAGACGAGAGAAA-----AACGGGTTTCCTTAG--CGC-----------AAAATGACAGTCGCACTCGCCGTCCAACACTGC------------ccaatca--------tttttg-------------------ttttgaatccAAAC----ACAGATTCA----------------------------TGTGgcttaatttttgtatatc---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   412762 135 - 33334924 AGAATAGATAAAGCGAGACGGGAGAAG-----AACGGGTTT-TCTTAGCGGC-----------AAAATGACAGTCGCACTCGCCGTCCAACACTCC---------CCTCCAATCA--------CATTTC-------------------CTTGGAATCCAAAT----Agag---------------------------------tttttcttaatttttgtattcc---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1490940 132 +  4147112 AGAATAGATAAAGCGAGACGGGAGAAA-----AACGGGTTT-CCTCG--CGC-----------AAAATGACAGTCGCACTCGCCGTCCAACACTTC------------CCAATCA--------CATTT--------------------CTTGGAATCCAAAT----AAAGACT------------------------------TCTCTCTTAATTTTTGTATCCT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  135736 203 +   227596 AGAATAGATAAAGCAAGCCGAAAT--------AACGGGTTTTTGCAA--TGC-----------GTAAAAACAGTCGCACCCGTCGTCCAGCAATACACTCTTCCAATCCCAATCAAAGTCGTGCttttgatagattttatgtgtttaatttttaattttaaa----ggaaattaaatgaaaagaaaagaaaattaacaTAATATTGTTGCTATTTATTATTTTCCCAC
i caeJap4.Scaffold17545 C 0 C 0

a score=2296.000000
s ce10.chrX             3135241 4 + 17718866 CAAT
s caeRem4.Crem_Contig0   318261 4 -  4500979 taat
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold629   412897 4 - 33334924 TAAT
i caeSp111.Scaffold629  C 0 I 18
s caePb3.Scfld02_0      1491072 4 +  4147112 TAAT
i caePb3.Scfld02_0      C 0 I 116
s caeJap4.Scaffold17545  135939 4 +   227596 TATT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8190430 110 + 21540570 I

a score=-8853.000000
s ce10.chrX             3135245 69 + 17718866 TGCACACCAACTTTTTAGTTGTTAAATTAAAAAAT----AAAAGTT---------------GTAAAAAATGCAAAAACCAATTCGTAT
s caeRem4.Crem_Contig0   318279 88 -  4500979 ttctccGTCATTTATTCCCTCATTTATTCTTGTTTTAGCAGAATTTAGTggttattgagaaaaaagagatggtGAAAACTGTCCACTT
i caeRem4.Crem_Contig0  I 14 I 2
s caeSp111.Scaffold629   412919 61 - 33334924 ttctctctcgctTCTCTACGAATAAATTTGCAtat----aaaatct-------------------gaaatcgaaaacaatattt----
i caeSp111.Scaffold629  I 18 C 0
s caeJap4.Scaffold17545  135943 48 +   227596 --TTCAgtacgttattttt-------tttttgttt----gaaaagt---------------aCAAAACACCCACAT------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1491076 116 +  4147112 I
e cb4.chrX              8190430 110 + 21540570 I

a score=-9695.000000
s ce10.chrX             3135314 37 + 17718866 CGATCTCGAGTAATTACAGGACCGATCGATC--------------TCGCAT
s cb4.chrX              8190540 31 + 21540570 CGGTTACCGGCAATGAAACGGCcgatttatt--------------------
i cb4.chrX              I 110 C 0
s caeRem4.Crem_Contig0   318369 10 -  4500979 ---------------------CCAATCTATT--------------------
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   412980 38 - 33334924 -------tagTTATGAAACcatccgtttttctttctctctaacaa------
i caeSp111.Scaffold629  C 0 I 7
s caeJap4.Scaffold17545  135991 21 +   227596 -------atatttcgaaaaagtttgcct-----------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1491076 116 +  4147112 I

a score=95088.000000
s ce10.chrX             3135351 337 + 17718866 TTACTTTTCTGTCTT--CCCCCTCTCAATGTTC----TGTTCTTTCTCCTTG-AATTGGCCGCGTTTCCATTCC---ATTTATCGTTTTGCCGGCCCAC------------AGATCATTCGATCTTCT--------AACACTTTTTCTAATTTCATTTTTATTT---------------------------------AA-----------TTTCAG-AATGGCCCGTGGACATCAAAAAGCTTTATCTCAACAACGAAACGCAGAAAAAACAGCGAAAGCTAAGAAGGCCGTGGTGAGTTTTCGAATGTGAAAAGTCCCTTTTTTGAAAAAAAA---ATACATTTTCAGGGAAGTGATCAAAAGAATGCTGCAATGGCATCTCTGCACCACAAGTGCACCGTTTGCATGGTACGT
s cb4.chrX              8190571 387 + 21540570 ttctctttttctcttg-gCCTCTCCTAATTTAT----AACAGTATT-CATCAGTTTTGGCCACGTTTCCCATT---------TCGATTCTCTATTCAACCGCCCGCA-CGAAagacctctaaacttttc-----ccgattgtttttcttcttc--ttcttcttactcctttttcttgttcccatcgtttacttcAAGAATTCTATTCATGTTTCAG-AATGGCTCGTGGACATCAAAAGGCTCTATCCCAACAGAGGAACGCTGAAAAGACAGCTAAAGCCAAGAAGGCAGTGGTAAGTCCCTTTATTCA-AAAGAGCCTTTTATTCCAAAATTG---TCTTTTTCTAGGGAAGCGATCAAAAAACCGCAGCGATGAAGTCACTCCATCATAAGTGCACCGTATGCATGGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   318379 343 -  4500979 TCTCCTTTCgatctttcttctctcttgaTTTTC----TATTGTCTC-CCTCGTTTTTGGACACGTTTTCATTTC--------CCGATTCGTCGCTGGAC------------ACGACCTccaactttct-------------tttctctccttc--ctTTTGTTTGCCTTTCATCT----------------------AAATCCTTTGTTGTTTCAG-AATGGCTCGCGGTCACCAAAAAGCTTTATCCCAACAAAGAAATGCTGAAAAGACAGCAAAAGCCAAGAAAGCTGTGGTATGACTTTTGACc---------ctttttcagtcaaaattgaaagaagTTTGCAGGGAAGCGACCaaaaaaaTGCAGCAATGAAGTCGTTGCATCATAAATGCACCGTTTGCATGGTACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413025 339 - 33334924 -tttctctc--------atctctcttcactctcttAGTACTGTCT---ATCG-TTTCGGCcacgttttcatttt--------ccgttttctaaCCGGAG------------AAGACTTTCAACCt----------------attctctcgttt--tctccgTTCTATCaactttc-------------aatttgaagaaaattttt----tttcagaaatggcTCGTGGACACCAAAAAGCTTTATCTCAACAGAGAAATGCTGAGAAGACAGCTAAAGCCAAAAAAGCCGTGGTAAAAACTTAGTCCCTTTCAGCGTTTCTTCAATCACAATC--------TTTGCAGGGAAGCGATCAAAAAACGGCTGCTATGAAGTCACTCCACCACAAATGCACCGTATGTATGGTACGT
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1491192 323 +  4147112 -TTTCTTTT--------CCATCTCCTCATTTCTCGTGAACTG-------TCA-TCCCGACCAAGATCTCATTCC--------CTGTATTGTAATTGGAA------------AAGACCTTCAACTTGCC---------ACAAATTCCCTTCTTT--GTTCCGCGC-----------------------------AACAAAAGATATC----CTTCAG-AATGGCCAGAGGACACCAGAAGGCTTTATCCCAACAAAGGAATGCTGAGAAAACTGCGAAGGCTAAAAAAGCCGTTGTGAGTACAATGATTCCTATTGTCCCGTTtcaatgaaagtt--------tt--caggGCAGCGATCAAAAGACTGCTGCAATGAAATCGTTGCATCACAAGTGCACCGTTTGCATGGTACGT
i caePb3.Scfld02_0      I 116 C 0
s caeJap4.Scaffold17545  136012 349 +   227596 tttcttttctct-----cactctccaaatttat----cgccttct--cattt-ttcttttctttttctccttctcgACCGCACCGCATCGCGGCCACGTTCATCGAATCGAATCGCATCTTATCGCATCGCCTACAGAGCGTTTTTCAACTTA--ATTTAATTT---------------------------------CCAAACTTT----CTACAG-TATGGCTCGTGGACATCAGAAGGCACTGAGTCAGCAACGAAATGCTGAGAAGCAGGCAAAAGCAAAGAAGGCAGTGGTaagttttgtaaaaaaaaaaattttttttt------aatt--------tttttagggAAATGATCAGAAAAACGCAGCAATGGCGTCCCTCCATCACAAGTGTACCGTTTGCATGGTAGGT
i caeJap4.Scaffold17545 C 0 I 43

a score=1998.000000
s ce10.chrX             3135688 47 + 17718866 AATAAAAAGCAATTTCCTTTCTACGTAACGCGTCTGATCTTTC----------------ACTC-------
s cb4.chrX              8190958 48 + 21540570 AAGGGAAAgtaatttcctcttt---------------ttctcggGGCCTATTTCCTGCAATTC-------
i cb4.chrX              C 0 I 89
s caeRem4.Crem_Contig0   318722 30 -  4500979 GATAAAAAGCAATTTCCTTAGT---------------TTCC------------------ATCC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413364 39 - 33334924 AATACAAAtcaatttcctttct---------------tttttg----------------atccCTTAAGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491515 36 +  4147112 AATAGAAACCAATTTCCT---T---------------TGTTTG----------------ACCCCGTATCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  136361 43 +   227596 I

a score=-5752.000000
s ce10.chrX             3135735 26 + 17718866 CATCGAAAGCTTCCCCCGTCTGAGCC------
s caeRem4.Crem_Contig0   318752 14 -  4500979 CAAGAATAGGT---------TGA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413403  1 - 33334924 ----------------------A---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491551 10 +  4147112 ----------------------ACTCCCGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  136361 43 +   227596 I
e cb4.chrX              8191006 89 + 21540570 I

a score=-1203.000000
s ce10.chrX             3135761 61 + 17718866 ACATTTAACCTGACTTCCTTTTGTT--------TGAACCTTACT-------------------CTGTTTACGATTGCAGTTTTTTAAA
s caeRem4.Crem_Contig0   318766 77 -  4500979 GCCCTTGATCccatttcctttttcg--------aaaacctttTCGATTC---TGCTGACGAAACTGCTTACGACACCGGTATACGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413404 86 - 33334924 ACGTTTGATTccatttcctctcttt--tgCAACTAAACCTTACTGGGCTCTTtgcttacgacactgcttacgacactgGTTTTTGTCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491561 74 +  4147112 AATTTTGATTCCATTTCCTGTCACTAACGCAACACAACCTCTTTGGGCT--------------TTGCTTACGACACCAGatttagtag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136404 46 +   227596 ACGTTTAACACTAAACTCTGTTTGC-GTGTAAAagacactttttaaa-----------------------------------------
i caeJap4.Scaffold17545 I 43 C 0
e cb4.chrX              8191006 89 + 21540570 I

a score=3467.000000
s ce10.chrX             3135822 68 + 17718866 AATTTGTAGTTACTTTACTGCAGTGTTAT-TTTTGGT-GCATTTTGATTGGGATTTC------TAGACATTGTAGT
s cb4.chrX              8191095 64 + 21540570 ATTTTGTAGTCTTTTT-----TCGTTGTTATTCCAGGCCCCGATTTAGAGGTTTTC-------TAGACATTGTAGT
i cb4.chrX              I 89 I 22
s caeRem4.Crem_Contig0   318843 68 -  4500979 ACTTTGTATTCggttt-----tgatttat-ttttgatttccgtTTGATTGGGTTTCGAGT--ATAAAAAATGTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413490 62 - 33334924 ACTTTGTAGCCGTTTT-----CATATTAT-TTCTGGTTCCAGTTTGATTGGTTTTGG------TAGACATTGTA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491635 62 +  4147112 tttttgtagccaattt-----tttgttat-ttttggtagaaataagatttggttttc------gaaaaattgta--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136450 64 +   227596 aaaatgtagtgGATTC----CAGTGTTAT-TTCTGGTAGC-TTTTGATTGAGTTTGGTCTCAATACAAAT------
i caeJap4.Scaffold17545 C 0 C 0

a score=-4015.000000
s ce10.chrX             3135890 22 + 17718866 ---GTTGGCAGGGGATTAACTGGCA
s caeRem4.Crem_Contig0   318911 18 -  4500979 ------TGGAAGAGATTACTCGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413552 22 - 33334924 ---GCTGGTAGGAGATTATCCCATC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491697 21 +  4147112 ---tgtggaaagaaa-aaaccagTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136514 25 +   227596 GTCTCCGACAGAATAGGAATTGAGG
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8191159 22 + 21540570 I

a score=-4161.000000
s ce10.chrX             3135912 73 + 17718866 -ACTACCAGA-----------CTTGGCAAAGAGACCATCTGTA--------AACAAAA-GATAGTGATGACGTCTGAAAA-----TCTCTGAAAATGTC
s cb4.chrX              8191181 35 + 21540570 ---------------------CCT-TCCA------GTCGTGTC--------AACA-----------ATGACGTCTGA-----------------GTGTC
i cb4.chrX              I 22 I 11
s caeRem4.Crem_Contig0   318929 73 -  4500979 -AGAACCAGACTAAACCCA--TGT-CCCA------TATCTGTA--------AACAAA--GGTGATGATGACgtctgaag------attctgaaggtGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413574 66 - 33334924 -GCTCCCAGA-----------CTTGATCA------TATggata--------aacaaaa-aattgtgttGACATgtacaa------aatttgaaagtgtC
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1491718 79 +  4147112 -TCTACCAGACAAAATGTAGTCGTGGCAG------TGTCTGTA--------AACAAAAGAATGGTGATGACGTaaagaag-----aatctgaaaacgtC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17545  136539 82 +   227596 CCCAACCAGA-----------CTTgcata------tgtatgtatgcatgtcaacaaaaaaaagatgatgACGTTGTAGAAGCTTCCACCTAGATATATA
i caeJap4.Scaffold17545 C 0 C 0

a score=-8916.000000
s ce10.chrX             3135985 43 + 17718866 AGAGACTTATGCGACGGATGTTCTTTGTACCGGAAACAATGAT
s cb4.chrX              8191227 32 + 21540570 ATAAATTT-TACAGCGTGTATACTTTGTACCGA----------
i cb4.chrX              I 11 C 0
s caeSp111.Scaffold629   413645 34 - 33334924 AGGAAGC------GTCTGTGTTCTTTGGACCAAGACTAAT---
i caeSp111.Scaffold629  I 5 I 3
s caePb3.Scfld02_0      1491801  7 +  4147112 ---------------------------------GGTTGAT---
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17545  136621 20 +   227596 ---------AATGCGACGTGTTCTTTGAA--------------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   319002  0 -  4500979 C

a score=-12492.000000
s ce10.chrX             3136028 109 + 17718866 TCACATTAGTAGCAGATAATACTGTAAAATGTTCAGAAAATACATACATAGAAAAATCGTTATTTTGAGAAGAAGCGAATCCAAAATTTTTGAATCAATTTAGTAATTT
s cb4.chrX              8191259  32 + 21540570 ------------------------------GTCTTGAAA----GAACTTGAAAGAAAGAGTACTGT-------------------------------------------
i cb4.chrX              C 0 I 7
s caePb3.Scfld02_0      1491808  33 +  4147112 -------------------------------------------GCATATAACACCGTGTATACTTTGAACCTATGC---------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136641  30 +   227596 -------------------------------------------ACACTCgaacgttttatttttttttaaact------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   413679   3 - 33334924 I
e caeRem4.Crem_Contig0   319002   0 -  4500979 C

a score=516.000000
s ce10.chrX             3136137 7 + 17718866 ATTAAAT
s caeJap4.Scaffold17545  136671 6 +   227596 -ttaaat
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1491841 0 +  4147112 C
e cb4.chrX              8191291 7 + 21540570 I
e caeSp111.Scaffold629   413679 3 - 33334924 I
e caeRem4.Crem_Contig0   319002 0 -  4500979 C

a score=-3033.000000
s ce10.chrX             3136144 20 + 17718866 ATAAGGAATTTGCGAAAAAC
s caeSp111.Scaffold629   413682 12 - 33334924 --------ATTACGTATGAG
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1491841 19 +  4147112 -TAATGAAACTGCGTAAGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136677  3 +   227596 ---------------aTG--
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8191291  7 + 21540570 I
e caeRem4.Crem_Contig0   319002  0 -  4500979 C

a score=-27827.000000
s ce10.chrX             3136164 157 + 17718866 TTAGTTAAAACATAAAACTTAGAACCTTTTCACATATTCTAAGAAATTATTTCTACGAAATAACCTGGCTGGTGCAGCTAATTTAAATTAACTTTAATGATATTAACGTTTGGATTTGTTTTTGAACGATTAATTAAACGAGTTAATCTTCAATTTA----
s caeRem4.Crem_Contig0   319002  85 -  4500979 TTGGTTGAATGAT-ACATTTAGA------TTGTGTCTTCTTTGAACCCATGATCACG---Taattgggatactgtagttgg---aaAGTAATT--------------------------TTTTG-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413694  27 - 33334924 -------------------------------------------------------------------GACACTGTAAccaa---aaat---cta------------------------attttg-------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491860  30 +  4147112 -------------------------------------------------------------------GAGGGTGAAAtcta---aaataaactt------------------------ttcttg-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136680  26 +   227596 --------------------------------------------------------------------------TATGTAA---ATATGTACA-------------------------TTTTTG---------------------------------CTTT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8191291   7 + 21540570 I

a score=101908.000000
s ce10.chrX             3136321 101 + 17718866 TTCAGTCCATGATGCCGGACCCGAAAACCTACAAGCAACATTTCGAGAGCAAACACCCAAAGAGCCCCATGCCCCCAGAGTTGGAAGGAGTTCAAGCATGA
s cb4.chrX              8191298 101 + 21540570 TTCAGAGCATGATGCCGGATCCAAAAACCTACAAACAACACTTTGAGAGCAAGCATCCAAAGAGTCCCATGCCACCAGAGTTGGAAGGAGTCCAAGCCTGA
i cb4.chrX              I 7 I 531
s caeRem4.Crem_Contig0   319087  99 -  4500979 --CAGAGCATGATGCCGGATCCAAAAACTTACAAGCAACACTTTGAAAGCAAACATCCGAAAAGCACCATGCCCCCAGAGTTGGAAGGAGTTCAAGCATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413721  97 - 33334924 --cAGTCAATGATGCCGGATCCAAAGACATACAAGCAACACTTCGAGAGCAAACATCCAAAAAGTCCAATGCCACCAGAGTTGGAAGGAGTCCAAGCAT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491890  98 +  4147112 --CAGTCCATGATGCCCGATCCAAAAACCTACAAACAACACTTCGAAAGCAAACATCCAAAGAGCCCAATGCCCCCAGAGTTGGAAGGAGTCCAAGCATG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136706  98 +   227596 --CAGTCAATGATGCCGGACCCGAAAACCTACAAACAGCATTTTGAGAGCAAGCATCCAAAAAGCACAATGCCCCCCGAGTTGGTTGATGTTCAAGCATA-
i caeJap4.Scaffold17545 C 0 C 0

a score=5330.000000
s ce10.chrX             3136422 197 + 17718866 ATTAAATCACAAGCTGCGATTGC----------------TCATCTGACAT------TCTTTTTAACATTAATGAAATGTCGAATAAATTA-TTGTCTCCCTCGAAACCCTTTGTCAAAC------ATTTCAGATTT-----------------------------GTCTTGCTACTTGCTTATATTCCTAATCCATTTGCCATTTATCACTGA-TAGATCACGGTAAATCCTATTGTTTCATTG----------------TTTCAAATGCCA
s caeRem4.Crem_Contig0   319186 201 -  4500979 AAGAGTTCACATG----------------------------ATTTATCGT------TCTTTT--------CTTAAATGCCAAATAAATTA-TTGCCTCCCATAAAATCCCTTTTAAATCTGTTT-GTCACCGATCTGCTCG-ATCGCATTTGCAGA---ATCAAAGATTTCATGCCTGTTAGCAATCCGGA------TGCCATTTGACACTGATTAGTTTATGTTTAATCC-GATGTTTCATTG----------------TGTTAAATGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   413818 214 - 33334924 AAAAAGTCCCCGG----------------------------ATTTGCAGT------TTTTcc--------accaa----aaaataaattatttgttttctttgaagcCCCTCT-CAGTCTCGTG-ATTACTAATTTTCTTACACCCCGGTTTACAA---ATCAAAGATTTTGTGCGAACTAATAATCCTAT------TGCCATTTGGCAATGATTAGGTCACGGTTAATCC-AATGTTTCATCTCTTCCAGACGAAATACTTCtgcttgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1491988 196 +  4147112 AGAAAGTCATTTG----------------------------ATTCG----------TTTTGT--------GCTgatt--aaaataaatta-ttatctTAACTGAAACCCCTCTGTAATTTGATACGTTGCAAATTAGACAACATTGATG-TAACAA---ATCGAAGACTTCGTATTCACTTATAATCCTAA------TGCCATTTGCCACTGATTAGGTCGCGGTTAATCC-AGTGCTTCATTG----------------TGTTGAATGTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  136804 219 +   227596 GTGAATTCACTCGACGTCATTTCGTTGGATAATACACTTCCATTCATTATCAATAATATTTA--------CCACAATGCAATAAAAACTG---ATTTTC-----AACCCTTTGAAAGTC------TTCTCAAAATCCTCTCCCTCGCATTTGCAAACTGATCCAAGACCCCGTGCAAGTTCATAGCTCTAG------TGACATTTATCCTTAGCTAGATCAC--CTAATCT-ATTGCTTCACAA----------------------ATATCA
i caeJap4.Scaffold17545 C 0 I 7598
e cb4.chrX              8191399 531 + 21540570 I

a score=-5716.000000
s ce10.chrX             3136619 37 + 17718866 TTTGGGGTGGAAAAATAATAAAAAAATGTTCTACAGA
s caeRem4.Crem_Contig0   319387 24 -  4500979 ATCCTCGTCG-----------AAGAATTTTCAGCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   414032 22 - 33334924 atgaaaaac---------------aatcgtTTCAAGG
i caeSp111.Scaffold629  C 0 I 290
s caePb3.Scfld02_0      1492184 26 +  4147112 ATCCGGAGCG-----------TCGAATCTTCTCTTGT
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I

a score=361.000000
s ce10.chrX             3136656 33 + 17718866 TCATTCATCTTTGATTGGCATATTGTAAT---------CTGC
s caeRem4.Crem_Contig0   319411 42 -  4500979 CTACTCATAGGTTTCCATTGTATTGTaaaaaaacgaatctga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1492217 32 +  4147112 CGACTCAT-GGTTTCTGGGATTTTGTAAG---------CCGC
i caePb3.Scfld02_0      I 7 I 58
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I
e caeSp111.Scaffold629   414054 290 - 33334924 I

a score=-960.000000
s ce10.chrX             3136689 59 + 17718866 A------TTGTGAGAAACTTTGTGTTTG-----CAACAACTTACCTAGCTCCATAATCGAGTCAAAATAA
s caeRem4.Crem_Contig0   319453 63 -  4500979 aaatatcttctCAGGGA-TTTCTTTTTGCACGTCAAAGATCCGCTCAGC------ATTAACCTGCACAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1492249 58 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I
e caeSp111.Scaffold629   414054 290 - 33334924 I

a score=3205.000000
s ce10.chrX             3136748 62 + 17718866 CAAAAGTGTTAGCTCTGTGAGAAC---------AATAGATGT--------TATTGCCCTGATTAGTTATCATGGTGTTT
s caeRem4.Crem_Contig0   319516 78 -  4500979 CAAAAGTATTAGTACTCTTCGGTCTAACAgattaaaaaatga-aggagcACGGATCCCGGTTTAGTTATATCGGcgttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1492307 78 +  4147112 cgaaagtattAGCACTTCGAGGACT-TCGGATTAACATACAATAGCACAACATTTACCAGTTTATTAATATTGGCGTTT
i caePb3.Scfld02_0      I 58 I 131
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I
e caeSp111.Scaffold629   414054 290 - 33334924 I

a score=-495.000000
s ce10.chrX             3136810 134 + 17718866 TCAAGTCTTTTTTGTT--TAATTTGTACTATTTTTCAAGCGGATTAACTATTCAAGTGTAT-ATGTATACCGAATAAGTTTTAAGGAAAGTAC-------------------AATGGCTACAGTACTCCAGATTTTTGGAATTGACTTTAAATTTA
s caeRem4.Crem_Contig0   319594 129 -  4500979 ctacatttttgtgatTCCTAAT-----CCATTTAACAAG----------ATTAGAGTGCATGATATGTACTGGATAATCCAAGATCAAACCaccactctctttttcttcggaaataactaccgtaaccc-gattttcaga--tgagt---------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1492385 131 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I
e caeSp111.Scaffold629   414054 290 - 33334924 I

a score=271.000000
s ce10.chrX             3136944 11 + 17718866 TATTTCACCCC
s caeRem4.Crem_Contig0   319723  1 -  4500979 ----------c
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1492516 11 +  4147112 tatctcgtCCC
i caePb3.Scfld02_0      I 131 I 4
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I
e caeSp111.Scaffold629   414054 290 - 33334924 I

a score=-4536.000000
s ce10.chrX             3136955 24 + 17718866 CTTGCTCCCAGTTTCTTCAAATAT------
s caeRem4.Crem_Contig0   319724 24 -  4500979 ATCGACCCCCGTTATATCCAATCT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   414344 27 - 33334924 TTTGGTCCCTGTT---TTCAACCCATTTAC
i caeSp111.Scaffold629  I 290 C 0
s caePb3.Scfld02_0      1492531 24 +  4147112 TTGAGTCATGGAC---CTCGGTTGA---GC
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8191399 531 + 21540570 I

a score=34197.000000
s ce10.chrX             3136979 111 + 17718866 TTCAAATGAAACCGAGCAGCTGCTCATGAAAAATTCACTTCCTTTTTCTAACAT-----GATCTAGCCATTGTGTTTATTAACAATTCA-AAAAATGATG-TTATAAAAAACCAATTA
s cb4.chrX              8191930  97 + 21540570 TCCCAACAAAACCAAGCAGCTGCTCATGACTAATTCACTTCCTTTTCTT----T-----CATCTATCGGACCTTTTTAGAGACTA-----------GATGCTCAT-AAAAACTAATTA
i cb4.chrX              I 531 I 3757
s caeRem4.Crem_Contig0   319748 110 -  4500979 TTTGTCCGAAACCATGCAGCTGCACATGAAAaattcacttctttttctt-atat-----CATCCAGCGATTGGGTTCATTGAcaattcataaaaatgatg-TTAT-AAAAACCAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   414371 107 - 33334924 CCAAAACAAAACCAAGCAGCTGCTCATAAAGCATTCACTTCCCTTTTCT----T-----AATCAAACTATGGGagtcattcaaaattcaaaaggatGATG-TTAT-ATGAACCAATTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1492555 113 +  4147112 CCAAACTTGAAACAAGCAGCTGCTTATTACCAAttcacttcctttttgt----tttcaaggtCGAGCGATTGGGTTGattaaaaattcataaaaatgttg-gcataaaaaaacattta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I

a score=-6228.000000
s ce10.chrX             3137090 19 + 17718866 GAGTTTTTGATGGCCACCA---------------
s caeRem4.Crem_Contig0   319858 15 -  4500979 ----GCATGATGGCCATCG---------------
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold629   414478 18 - 33334924 --------GA--------GTTTTTGATGGACCCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1492668 19 +  4147112 --------gatGACC--CGtttttttAG-----C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=-1914.000000
s ce10.chrX             3137109 56 + 17718866 GTGATGCAGTGATGTTAGTAT--TTCTGGTCGCCTAATTTTAATTCAGGCTTTTGAGT
s caeSp111.Scaffold629   414496 28 - 33334924 ------------TGTTAGTATACT------------AGTCTAGGCCA------AAATG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1492687 26 +  4147112 ------------TGTCAGAAT--T------------GTTTGAAGGCA------TGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   319873 43 -  4500979 I

a score=3274.000000
s ce10.chrX             3137165 88 + 17718866 GAAAGAGTACGCGTGTG---TCAGTG---AAAGTGTGCATGATCCAGCTCAGTCTCGCGATGTTTGCTCCATTCATAAGTCATGTCaaaaatat--------------
s caeRem4.Crem_Contig0   319916 77 -  4500979 ATGAGAGTACGTGTGTC---CtgttggagaaaaagaaaaagatccAGTTCAATGG-CCGATGTTTGCTC-------------TTTCGAAATGAT--------------
i caeRem4.Crem_Contig0  I 43 C 0
s caeSp111.Scaffold629   414524 76 - 33334924 AcatcagaaaatgagttgCGCCCT-----GAAACGTGCATCTCTCAGCTCAATGGATCGGTGTTTGCTC-------------TGCCAGAATGAT--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1492713 87 +  4147112 ACGAGAGTACATGAGTC---TTCC-----ACAATGAATATGATTCAGTCCAATAATTTGGTGTTTGCTC-------------AATTTGGATGATGTTATCTAAAATAT
i caePb3.Scfld02_0      C 0 I 1218
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=2252.000000
s ce10.chrX             3137253 38 + 17718866 acaaaaaaaattaaaaatttattGTAGGTTCTGCAAAA
s caeRem4.Crem_Contig0   319993 31 -  4500979 ATGAAATGAATTACATG-------TAAGGCTTGCAGAA
i caeRem4.Crem_Contig0  C 0 I 1507
s caeSp111.Scaffold629   414600 32 - 33334924 AGAGAATGAGTTATGAGT------TAAGTTTTGCAGAA
i caeSp111.Scaffold629  C 0 I 1067
e caePb3.Scfld02_0      1492800 1218 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=0.000000
s ce10.chrX             3137291 844 + 17718866  
e caePb3.Scfld02_0      1492800 1218 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   414632 1067 - 33334924 I
e caeRem4.Crem_Contig0   320024 1507 -  4500979 I

a score=268.000000
s ce10.chrX             3138135 5 + 17718866 TGTTG
s caeSp111.Scaffold629   415699 5 - 33334924 TGGTG
i caeSp111.Scaffold629  I 1067 C 0
e caePb3.Scfld02_0      1492800 1218 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   320024 1507 -  4500979 I

a score=7146.000000
s ce10.chrX             3138140 64 + 17718866 CTTCCGTCACAGAGTTTGTGTCTTCTGCTAGATGTTGAAACTACAACTGTAGAGTCACGCGAAA
s caeSp111.Scaffold629   415704 63 - 33334924 CTTTCGTCACACAGTTTCTGTCTTCTGGCTCGGTTGACAGATACAATTTCCG-GTCACGAGAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1494018 63 +  4147112 CTTTCGTCACACCGTTTCTGTCTTCTATCGGGGTATGAGAATACAATTGCCA-ATCACAAGAAA
i caePb3.Scfld02_0      I 1218 I 1004
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   320024 1507 -  4500979 I

a score=1301.000000
s ce10.chrX             3138204 182 + 17718866 GTAGACACTTGGTACTAGATCATTGTAGAGA---CTCATAT---------AAATCCTCAA----------ACTAGATCTTCTGTCGATATATTGTATGCGATTTTCA----------GACAGAACCCATTTGTTTACCAGTTACCTGTCTAGAATGACAACCTCCTTCTGATACATATCAGGTCAATGTCAGAACCCAGTATGATTTTTATTCC
s caeSp111.Scaffold629   415767 199 - 33334924 G-ACATAATCCGTATC---TCATGGTATAGAGCTCTCAGATCATACGAAAAAATCAGCAGTCAGGTTGATTCTAGATCTGAT-TCGACATTTTGTATTTGATTTGTAGCTATGAATGGACAAAATCCTGTTGTTTAC-----ACGTACAAACTATAAAATTTTGCGCATGACACAGATCAGTTCCAGATCAGAAACA-----GATTTTAGTTCC
i caeSp111.Scaffold629  C 0 I 783
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   320024 1507 -  4500979 I

a score=0.000000
s ce10.chrX             3138386 330 + 17718866 GTGTTTTGGTACAGACAGTGTGAGTGTGGGTTAGAATGAATTCATACGCTAAAATTGTACAGCTCAGACGCCGAATTCAGACGCCAAAACTGATTCAGAGGCTATAATTTTTGATCTATAACTGGCTATGAATAACAGCACGGGTGTCTATAAAATGTGAAATGCAAGTTAAGTAAATGATTGCTTATACTTTTGATTGAAAACTTTGTAATGCAAAAACATATTCGTTTTGAAAGATCATAGAAAAGGGTTTCATATGTTTCGTGCAAACTCAACGTGTTACAAACCGTTGCACAACAGCAGAAAACACAGCGCAAAAATCAGACCAAT
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   415966 783 - 33334924 I
e caeRem4.Crem_Contig0   320024 1507 -  4500979 I

a score=4885.000000
s ce10.chrX             3138716 234 + 17718866 TCCTAGTATTGCATTCTGCAATATCACCAACATCTAAG--AATCTTATGGTGG------TTTTGAAAGATCA---TTAGTGGTGAA--GAATACTGTAGCTATATATAAAAAAGTTATTTTTTTAGTTGAATTAGTCACATTTCAGCTGTCCAATTAACAC------GAAACAACACCAAGGTTCCCTGTAGTCGGCGTATCTCCTTCAAAAAAAAACATTGACTAAGACCACAGTTCAAGCACACGGCTTTT
s caeRem4.Crem_Contig0   321531 240 -  4500979 TTTTCGTCTTGC-TTTTGATATATCACCCACACTAGAATTAATCATAAAACGGGTGAGATTTTGAATGATCTGATTTGGAAGCAAacggagtactgtagttgtaTAT------GTTGTTTTCGTATTTTGTCTGAACAGGTTTCAGCTGCTCTAT-AACACCTGTAGGACACATCTCCAAGGCT-----TAATTTACCTTTTTGGTATAACAATAAACATCAGCTAAGACCACACTTCAAGCACATGATTTCT
i caeRem4.Crem_Contig0  I 1507 I 105
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   415966 783 - 33334924 I

a score=0.000000
s ce10.chrX             3138950 827 + 17718866  
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   415966 783 - 33334924 I
e caeRem4.Crem_Contig0   321771 105 -  4500979 I

a score=894.000000
s ce10.chrX             3139777 52 + 17718866 TCTGAAACTTTTTTGACAA-AATCCCTTAGAATTGCATTTTATTTCAAATTGC
s caeRem4.Crem_Contig0   321876 50 -  4500979 tcttataattttcagataatcatCCCCTCgaatcaaatttcagctc---tTTC
i caeRem4.Crem_Contig0  I 105 C 0
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   415966 783 - 33334924 I

a score=-920.000000
s ce10.chrX             3139829 42 + 17718866 TGACAAGTCACAC-ACCGTTTGTCAATT-------CAACG------------------ATTGATAACC--------
s caeRem4.Crem_Contig0   321926 75 -  4500979 CGGCAAGTT-CAATATCTCTCACCTGTTTTCGCAACAACTTAGTATGATAAATCATGCGTTAACCgtcgttttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   416749 42 - 33334924 TGACAAATCACACTATCGTTTACCCGTT--------AACT------------------GTTGATAGcc--------
i caeSp111.Scaffold629  I 783 C 0
e caePb3.Scfld02_0      1494081 1004 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=31151.000000
s ce10.chrX             3139871 391 + 17718866 AATTTCCTTTA-TCAATAGT--CGTTTCCTG--GATGTCTAG-GAACCTCATCATTGTTC----------TTTAAATTGGCCAATTTCCTGACACAATTGACGTGGTGGCTGAGCA-CCAACCAGATAAAGTAGATTAAGTTGTCGCGACCCA------CAAG-----TTTCAGCAGCTAG--ATCAAGCAAAAAAATCCGGAAAATGAGCTGGATTATACTATGTGATTATCGCAATTTCCGGTCAC---GCGCAAGCACTTTACGTAAATTTTGACCAACTAAACCCTGTGAAGCAAATGTGCAGAGCTGCTTGCCGGAAG--ATAGCTCA------------CACGTAAGGTCTAGAGTAGATCAGGTGAGGGTTGCAAAGACACATCCGATCCATCATA-CTTGCAGGAATGAATGAGGAAGTTCATGACGCAAG
s caeRem4.Crem_Contig0   322001 383 -  4500979 aatttcctatG-CCAACGGT--CATTTCCTGTCGAAGTCTGGaaaattccattattt-tcgatttcgaaaaaataattggataATTTCCGGTGACTGTTGACGT------TATGCACGCTATCCGGTG---------TAGCTATCGTACCCCGGCGATTCCAG-----ACTCTcctctttg--aaaaaatggagagtctgcaaaaatggagaggaTAACGCTACGTGATCAGGGTAATTTCCGATCAT---ACGATACCACTT---GACGTCTTTGACCAATTGAACTGATGT----------GCAGAA----TTTCCGGGAGAAAAAGCTCAA-----TTCTCGCACGTCAGGTCT--CACTAGTCAGATGAGTGTTGCAAAGTTACATCCGATCCAATAAG-TTTgca-aattgaatgaaaaaagt-gtgacaAAAG
i caeRem4.Crem_Contig0  C 0 I 361
s caeSp111.Scaffold629   416791 384 - 33334924 aatttcctatt-ttttggaTACCACTTCCGAAAAGTGTCTAG-AAGTTATACCAGTG-CC----------AAataatttatcaatttccGGTGACTGTTGACGT------GAGGCA-GGTATCCGGTG---------TAGTTATCATGCCAAGCTC---CCTG-----ACCCagatcatcgaaaaaaagtagaaCATCGTGATACATGAAACTGATTACACTTTATGCCAAAGTCAATTTCCGATCACGAGGTTCCAGTAAGT---GTAACTTTTGACCAACCAAACTTTTGG----TTATGTGCTAAA----TTTCCGGAAGAAACAGCTTAGCC---CCTACCCACGTCAAGTCT--ATTAGGTCAGGAGTGTTTTGCAAAGCTGCATCCGATCCCATGAA-TTTGCT-GCACGGACCAGGAAGTTCGTGACGCAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1495085 372 +  4147112 aatttccttttgttttcaatcccATTTCCGAGTGAAGTCTAG-AAGTATCATCATGG-TC----------TAGAACTTGGTTAATTTCCGGTGACTGTTGACGT------CTGGTA-TCCATCCGTTG---------TAGCGATTGTGACTAGGAG---CCCGTATCTACCCAGCTCATGG--AAAAAGCAAAACATCCTGATA---------ATTTACA-TCGATGATGAGGTTAATTTCCGGTCAC---ACTCCGAAAATT--CGCAACTTTTGATCCAGCAAGTTTCCGG------------TGAA----ACACCGGAAGAAACAGCTTATCCTATTCCTCCCACGTTAATTCT--ATGTGGTCAGGTGGGAGTTGCAAATTAGCATCTGATCCTAGCAACTTTGCA-AGGTTGACAAGGAAGTTTATGACGCGCA
i caePb3.Scfld02_0      I 1004 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=573.000000
s ce10.chrX             3140262 2 + 17718866 TG
s caeSp111.Scaffold629   417175 2 - 33334924 TG
i caeSp111.Scaffold629  C 0 I 359
s caePb3.Scfld02_0      1495457 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 I 368
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   322384 361 -  4500979 I

a score=0.000000
s ce10.chrX             3140264 687 + 17718866  
e caePb3.Scfld02_0      1495459 368 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   417177 359 - 33334924 I
e caeRem4.Crem_Contig0   322384 361 -  4500979 I

a score=442.000000
s ce10.chrX             3140951 6 + 17718866 ATGTTC
s caePb3.Scfld02_0      1495827 6 +  4147112 ACGTTC
i caePb3.Scfld02_0      I 368 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   417177 359 - 33334924 I
e caeRem4.Crem_Contig0   322384 361 -  4500979 I

a score=150.000000
s ce10.chrX             3140957 2 + 17718866 CC
s caeSp111.Scaffold629   417536 2 - 33334924 CC
i caeSp111.Scaffold629  I 359 C 0
s caePb3.Scfld02_0      1495833 2 +  4147112 gc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeRem4.Crem_Contig0   322384 361 -  4500979 I

a score=12382.000000
s ce10.chrX             3140959 151 + 17718866 ATTGTGTAGCTGTTCATCCGTATTTCCCAGTTGATCTCCTTGATCT---TTACGTC--TTTCCTGCAAAATCCCATACCATAAAGAAATC-AGCAGTCCAAGTTCTCCAGTTTGTCG-------GGCGCCATCTGAATCTAATAAATAGAAATGGAATGAGACG-----
s caeRem4.Crem_Contig0   322745 148 -  4500979 ATTGTTTAGATCGTCA-TCATTATATAGAGATGATCTCGTTGATCT---TCTGGTCA-TTTTCTGCAGTATCTCAGCCATCGTCCTAATGAAATAGTTCAATTTCTAAAGATT-----------GTCGTCATCTTCAACCAAT---TA--AAGAGAACGATATGCGAAC
i caeRem4.Crem_Contig0  I 361 C 0
s caeSp111.Scaffold629   417538 147 - 33334924 ATTGTTTAGTTGTTTACCCGTCCTTGAGATCTGATCTAGATGATCTCAATTAATACACTTTTTTGCAATCTCTCAATC---AAATGAACG-AGTAGTCCATTTTCTGCAAACCC----------GGTGTCACCTGAATCCAAT---TAGAAAGTGAACGAAATG-----
i caeSp111.Scaffold629  C 0 I 68
s caePb3.Scfld02_0      1495835 156 +  4147112 attgttttgttgtttattCGGCCTTGACAATTGATCTAGATGATCTCAATCTGTACACTTTTTTGCAATCTCTCATTCCAAAAGCTAATG-AAAAACCCATTTGATGAAGACCCTTTGGAAGAAAGCGTCACCAGAATCTATT-------GAACGATCGAAGTG-----
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=-4739.000000
s ce10.chrX             3141110 74 + 17718866 ATACC-------CCCCCCCAGATTAATGTTCGATTTGACTTGATTTGGTGTCGGCATCAA-CGAACCTGTAAAGCCTCTCCA----
s caeRem4.Crem_Contig0   322893 52 -  4500979 ATATT-----------CTGAGATCT-----AGAGTAAACATGCTTTA--------------TAAATCTGAAGAATATCGGTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1495999 84 +  4147112 ATACTATCATCTTGCCCTCAGATTTTCG--AAGGATACCACTTTTTGGAAGTGCCGTTTGCTAAATTGAAACGTCCCCCGCTAACA
i caePb3.Scfld02_0      I 8 I 1
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I
e caeSp111.Scaffold629   417685 68 - 33334924 I

a score=1489.000000
s ce10.chrX             3141184 69 + 17718866 CTTCAAAGAATTGCTGACAGATGGCTACGGCTACTACAGTCGACCTTTGAAATTC-----AGCATTCTCAAAGA
s caeRem4.Crem_Contig0   322945 61 -  4500979 -GTTTGTGAATTGTTGACATCTGTTGACGATTC--CTTGTCTTCTTTT--AAGTCTGAGTGGAATA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   417753 59 - 33334924 CTTCTGTGAATTGTTTACAGATGTTTACGAATG--ATCTTGAATTtgc--aattc-----aaaattct------
i caeSp111.Scaffold629  I 68 C 0
s caePb3.Scfld02_0      1496084 58 +  4147112 TTTCAGCGAAATGTTGGCAGATGTTTACCAATA--ACGGTGAAACttc--cattc------aaatttt------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8192027 3757 + 21540570 I

a score=29348.000000
s ce10.chrX             3141253 168 + 17718866 CGCCTTATCTTGGTCGTG------TTGTTTACT---TATACA-TTGCAACAATT--CCCTTGTCTAAACTCCCGATTACACGCTATTAAAGGACTCAACGAACTAGAACAGTTCCGTTTGTTAATTCCA------GGCAATGTTA---------AGAATGC-ATTC------------GATTTTGTAGAATTCGCAGTGATGTTTGTT
s cb4.chrX              8195784 173 + 21540570 CGTCTTATCTTGGTCACAAACACATTGTTTACTTTCTTTACATTTGCAACACTTTCTTCTTGCCCAAACTCGCAATGAGATGT-----AAGGACTCATCGTACTCGAACAGTTCCGCTCTTCTATTCTA------GAAATGTTTC---------AGTACGC-GCGCTACTT-------AATTT-------TTGAGACTGACGTCTGTT
i cb4.chrX              I 3757 I 14335
s caeRem4.Crem_Contig0   323006 181 -  4500979 CCTCTTATCTTAGTCACAAATGTTTTGTTTACT---TTTACGTTTGCAACACTT--CTCTTGCCCAAACTCA-GATGCTATCA-----GAGGACTCATCGAACTTGAACAGTTCCGCTA-GCCATTCTA------gaaactcttcattttcttgagTACGT--TTCTGCTTTGTTGCAAGTTT-------TGCACGAAGTtgtttatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   417812 169 - 33334924 ---cttATCT-AGTCACAAACG--GTGTTTACT---TTCACATTTGCAACACAT--TTCTTCGCTAAACTCGCGATTACATGCTATT-AAGGACTCTTCGAACTTGAACAGTTCCGCTATCTGATACTGTTTA--AGATTGTTAC---------CGTATCC----CTCTTGAga----tattt-------ctgaat-tctagTTCTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1496142 176 +  4147112 ---cttatcTCAGTCACAAACA--TTGTTTACA---TTTACGTTTGCAACACAA--CTCTTGCATAAACTTGCGATTAC---------AAGGACTCTTCGAACTTGAACAGTACCGCTAGTTCATGCTGCTTGACAAACTTATAA---------TGTATTCAATTCTGATAAGC----AAGTTTGTTTACCTAACTGTTTTGTTTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  137023 7598 +   227596 I

a score=21801.000000
s ce10.chrX             3141421 510 + 17718866  
s caeRem4.Crem_Contig0   323187 513 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   417981 534 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1496318 541 +  4147112  
i caePb3.Scfld02_0      C 0 I 4992
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I

a score=-526.000000
s ce10.chrX             3141931 4 + 17718866 TGCT-
s caeRem4.Crem_Contig0   323700 4 -  4500979 TGAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   418515 4 - 33334924 -GGTT
i caeSp111.Scaffold629  C 0 I 1147
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I

a score=70.000000
s ce10.chrX             3141935 14 + 17718866 AGACTATAAATAAT
s caeRem4.Crem_Contig0   323704 14 -  4500979 GACAAGTTAATAAT
i caeRem4.Crem_Contig0  C 0 I 471
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   418519 1147 - 33334924 I

a score=0.000000
s ce10.chrX             3141949 1379 + 17718866  
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   418519 1147 - 33334924 I
e caeRem4.Crem_Contig0   323718  471 -  4500979 I

a score=4502.000000
s ce10.chrX             3143328 153 + 17718866 AAGAATTCCAATTAACTCTACTTGGTCATCTGGGTCCGGGTTTCTGGCAATGACGCAAGATTAGGTCTTTCGGCGTAGGCAGACAAGT-------CTGAAACGAGTCAAACATTACAAATTCTGTGGTCCAGACAATCTTGTCTTGTTTCTTGTCCTTTT
s caeRem4.Crem_Contig0   324189 156 -  4500979 AATAAATTTAATGAATTCCATTCGATTctcatgttttaattttttgaagatgatgCGTGACTGAGTCATTTTGAGGAGACTGATGATCTACTACGCTAACCCGAGTCAAATATTAAGAATTCAGTGGTCCAGACGAtct----gtttttcttgttctttt
i caeRem4.Crem_Contig0  I 471 I 420
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   418519 1147 - 33334924 I

a score=0.000000
s ce10.chrX             3143481 227 + 17718866 AGGATCCAGCAGCAAAAACTCGAAGCTTCGACATTTTCTTGAAACCAATTTTATGTCAAGTTAGAAATTGTGTCTTTAATTTGGATGGACATGCTTTGAAAGCACATTAAGTATAACTATCGTAGTGACATAATTTGCGGAGACAGTTCAGTTTTTCCCAGTAGTTTAAAAACACGGCCAAGAAATCAAAAAGTCAAGTTTATATCAAAACATTGATTTTGGATTTT
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   418519 1147 - 33334924 I
e caeRem4.Crem_Contig0   324345 420 -  4500979 I

a score=719.000000
s ce10.chrX             3143708 76 + 17718866 TTTCAATTACATAAATTGACTCAAAAAAGATGCATGTTGATTCATTTCTTTT--CCAGACTTTTAC--TGATTAATATCG
s caeRem4.Crem_Contig0   324765 73 -  4500979 TTTCAATTA--TAGTTCGGCTTTTAGAAAATCCAGGGTG-----TGTCTTCTAACCAGACGTTTTCCTTCATTCTCGTCA
i caeRem4.Crem_Contig0  I 420 C 0
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   418519 1147 - 33334924 I

a score=11241.000000
s ce10.chrX             3143784 164 + 17718866 ATAACAATTATGTTCATTAAAAACA--GGTTGATATTGGTGATATTTGTTTGAGACAATTATAAAATGGCTACCAAATCAGACAGCCAGCTGGTAGCTGCCACAGATGATATCACT---------TGTCTTTTAAAAACAAAAAGTCTCTGTGATTTTCTCCAATTTGTCATAAT
s caeRem4.Crem_Contig0   324838 158 -  4500979 ACCCCAATT-TGTTCATTAAAAACACCGATTGAACCTGGTG---------TTAGTCACATATGAAATGA----CAATTCAGGCTACCAACTTGTGCCAGCCACAAGTGATATCACTGT-CTTCCGCGACTAATCataacaacaatttttgaaag--ttgctAGATTTGTCATAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   419666 155 - 33334924 ATAACAATTGTATCCATTAGCAGCA--GATTGAGACTGGCG---------TGGGGTA-----AACATGA----CAATTCAGGCTACCGAATGATGCCAGGTATAGGTGATATCACTGTCCCTCTATGCCTAATAATAACAAAACTTTTCTCCCGCATCATAAGATTTGTCATAAT
i caeSp111.Scaffold629  I 1147 I 2677
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I

a score=105.000000
s ce10.chrX             3143948 7 + 17718866 CATAAGT
s caeRem4.Crem_Contig0   324996 7 -  4500979 TAAACGT
i caeRem4.Crem_Contig0  C 0 I 5030
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I

a score=0.000000
s ce10.chrX             3143955 1385 + 17718866  
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  137023 7598 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=5508.000000
s ce10.chrX             3145340 232 + 17718866 CAATTTTCCTTGAATTTCTAACCTTTATCCGCCATTTCCCGTACGTGCCACCAAGTACTCCAAGGCCACGCCCTTTTTGCTGTTCGGAGCACAAAACTCGTCATGATTTTTTTGCGCCGAGGGGTGGAGCCTTCTGCTATATGGTGTTCTGCGAAAGAAGGTATGGGGCGTGGCTTGGTAGACATTATATATTGTGCCTTCACCAGTTCAAAATTCAGATTCTGCTTGTTGT
s caeJap4.Scaffold17545  144621 212 +   227596 caaatttgtCTAGATATACAGATTTTCTGCCATATTTTCATTCCGTGCCATCTCGTACTT-GTGGCTCCGCCCATAAAGCTGT---------GGAGCCCGTCATGATTTCTTTCAAAGGCTGGGCGGGGCCTCTTTCAAGGTTCTGCTCTG-------AAATATGGGGCGGGGTCTAGCAGGCAATATATATTGTGCCTTCCTCAGTACAAATTTCAA---TTGACTGTTGT
i caeJap4.Scaffold17545 I 7598 I 237
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=0.000000
s ce10.chrX             3145572 254 + 17718866 TTCAATCACAATCCTTCTGTCTTCAATTGTACTGGTCTGCCCCGACTACAGCTCCACAAACTGATAAAGTAAGTTAAATCTCAACTCACTACATTCTCATTCATTTCTCATTTTCTATATGCATACTTTGATTAATATCACACTTTTTGACTCATCCTTTCCCTTCTATGTTTTCAATGCATTCGGTTGCTTTGTGCTTTATAGTTATTCTCATATGCTTTCTTACTTTGTTTCTCATTTCAAATTCAAGTTAG
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  144833 237 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=3236.000000
s ce10.chrX             3145826 137 + 17718866 AGATCGCTTGATGTGGTGTCGGTGGGTCTAGTGTCATTGC-------GAAAATTAGTCTCCAAGTAGAAAAGAATACATGAAAGCACTCGCATGACGTGATCGGACCACA-TTGTTTGCAATAATGGCCGATATATTGCGTGTCT
s caeJap4.Scaffold17545  145070 135 +   227596 AAAGCGCTTGTTGCG-TAGCATTAGGACTAGAGGCACAACACATCCAGGAAATTAGGTTCAAAGAGAAAAAGCAGGCATGAAGGCATAACAATGACGTGATGAGACAACATTTATTTGCAAT---------TGTGTCGCCTGTCT
i caeJap4.Scaffold17545 I 237 I 983
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=0.000000
s ce10.chrX             3145963 860 + 17718866  
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  145205 983 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   419821 2677 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=238.000000
s ce10.chrX             3146823 13 + 17718866 CCAGGATGCCATT
s caeSp111.Scaffold629   422498 13 - 33334924 CCAGTATGTTCGC
i caeSp111.Scaffold629  I 2677 C 0
e caePb3.Scfld02_0      1496859 4992 +  4147112 I
e caeJap4.Scaffold17545  145205 983 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=584.000000
s ce10.chrX             3146836 3 + 17718866 TTA
s caeSp111.Scaffold629   422511 3 - 33334924 TCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1501851 3 +  4147112 TCA
i caePb3.Scfld02_0      I 4992 C 0
e caeJap4.Scaffold17545  145205 983 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=5836.000000
s ce10.chrX             3146839 174 + 17718866 CTTATGACTTCAAGTATAACGAAACTATCCAGGGATGTTATGAAGATGACGGTGTCTCCAAAGACTTTTGCAACGATGAATGCAAAGTTGAAGTCAAGA---GTTACGCCGCCGAAGGCGATAACGTCAAGAAATACCCAGTCGCATTCTGCTGCTGCCGATCATC------CCATTGCAATG
s caeSp111.Scaffold629   422514 171 - 33334924 CTTATGATATGAACCGCAACGAAAAGATCCAAGAGTGTTTCCATATGCCTGTCGAGAGTATCGACACTTGCACTCCAGAGTGCAAGTTGAACATGAAGA---TCCATTCATTTCAAGGGAAACGAAAGTATATA---CCAGTGGGATTCTGCTGTTGCACCACAAC------CAATTGCAATG
i caeSp111.Scaffold629  C 0 I 9875
s caePb3.Scfld02_0      1501854 177 +  4147112 CCTATGACATGAAGAGGAACGAAACACAACAATTCTGCTTCGAAAATCCAATCCAGTTCCCGGAACTCTGCAAAGATGAATGCGAGATGAACTTCAAAG---CCTACTCGTACCAAGGAAGAAATGTCTACAAA---GGAGTTGGCTTTTGCTGCTGCAGAACTGAGTTGTGCAATCTCAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  146188 174 +   227596 CCTACGACTATACGAATAAAATAACAGTGCAAGGATGCTACGACATCTCCAC---GTATGACTTCTCATGTCAGGACGAGTGTGTTTTCAACGTGAGGAAGCACAACACGATGCCAGGAAGCTCAGTGAAGTCTGCCGTGGTGGGATTTTGCTGCTGCAAGACATC------CAACTGCAACA
i caeJap4.Scaffold17545 I 983 C 0
e cb4.chrX              8195957 14335 + 21540570 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=-509.000000
s ce10.chrX             3147013 3 + 17718866 CAG-
s caePb3.Scfld02_0      1502031 3 +  4147112 CAG-
i caePb3.Scfld02_0      C 0 I 13445
s caeJap4.Scaffold17545  146362 3 +   227596 -AAA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=2380.000000
s ce10.chrX             3147016 199 + 17718866 TATCAAAGGTATCAAATATTTTCAAATTCATATTTTCAAAACA-AATTTTACCACGACACTGACACCTAACATTACAGAAACTACTTGATGCTGCATACGAACGTTACGTCAGCAACCAAAATCGTCATACACATCACCACAAGCATCACAACAATAATAAAGAGACGATGAGCTTTTGGGATAGATTCAGCAGCTTCTA
s caeJap4.Scaffold17545  146365 182 +   227596 TTTCCGAAGTA-AGAATACCACAAAACT-----TTTAGAAACGTGATCCTACTACGAAGGTTATAGGTCCCAATGCAAAAA------------GCTTACGATGCTTACTTATCGAAGCGTGAGGAGCACCACCATCACCATCATCATCGCGACACTAATCAAGATACGGCTAACTTCTGGGATAGCATTCGCCGCTTTTA
i caeJap4.Scaffold17545 C 0 I 3903
e caePb3.Scfld02_0      1502034 13445 +  4147112 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=0.000000
s ce10.chrX             3147215 2781 + 17718866  
e caePb3.Scfld02_0      1502034 13445 +  4147112 I
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I
e caeRem4.Crem_Contig0   325003 5030 -  4500979 I

a score=816.000000
s ce10.chrX             3149996 314 + 17718866 CCTTATCACAAACTCTGAAAAAAAATGGAATGTCTGAGAAAGTTGAGTCATA---ATATGAAACTAACCAGACAACATCAATCTTTTTTC---CTTTTTCACAGGCAATTTTACCAACC----AGACATCCAAAAAGGACAAAGTGTCTACTTGAAATATCTACAAAGAAACTTCTAGCGTCCTAGA--GATCAACAACTGGATGTTGTAGAAAGCAAATCATTTCTAAAAAACGAACACAA---GTTCGGGATATTGTCAACACTTTACCCGTGT----------ACAGGTGTTTTCAGAAGGGCAGATGCCGGTTCTGATATCCACGTGAATTCACC
s caeRem4.Crem_Contig0   330033 302 -  4500979 CCCTTTCACaaactccaaaaaagtttgaa-----cgGGAAA--TGAATCACATTTACTTTTACCCGGACAGATGAAACAGACAGCTTTTCAGACTTTTAGAAATTCAAGT--AGGAACCTTGTAGACATTCACAAAGGTCAAACCGtctacttt-----tc--------aatttcagccgtttttgaTAGACCGACATTCCAAGTGTGAAGAAG-------ATCTCTGAAAA-------CATTCTGTCTGCTAtattttca-catgtttctGGTTTTCCGGTTGCCACAGGTGATTTCGAACAGACAGGAATGGAAAGTCACATACACTTATGCTCCAT
i caeRem4.Crem_Contig0  I 5030 C 0
e caePb3.Scfld02_0      1502034 13445 +  4147112 I
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I

a score=10422.000000
s ce10.chrX             3150310 152 + 17718866 TTTTGGGTGTCAGATG-TTTCTTGGAGTGTTTTCTAAACTTACGACATCGTCTAGACAGATTTAT----TTGTCTTGGATTTATTTTTGC-----------GAAGAAAATTGGAAAAATGTCTGTGGTGTGTAGTGGAGAAGGAGGGAGTACAAACCTGGAAAAGAAA
s caeRem4.Crem_Contig0   330335 150 -  4500979 TTTTAGGTGTCAGTTGTTTTCCTGTTGTGTTCTCTAAACTCTCGACATCGTCTAGACAGATTTAG----TGGTCTCG-----CTTCTTGGCTACACGTCCTGAA------TTGAAAAACGTCTGTGATGTT--GTGAACATAGATTAACGttagctcaaaaaataaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1515479 152 +  4147112 TTTTAGTTGTCAGATGTTTTCCTAGAGTGTTTTCTGGTCTAACAACGGCGTCTAGACCGATTCAGCCtcccgttttc-----ttttttgg--gcaTTGTCTGAA------TTGAACGAAGTCTGCGAAGTT--GGGAACATAGATTAACA-CAACACTGGGAATGAAA
i caePb3.Scfld02_0      I 13445 I 1685
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I

a score=492.000000
s ce10.chrX             3150462 17 + 17718866 GCAAAAAT----AATTTTGGA
s caeRem4.Crem_Contig0   330485 21 -  4500979 gcaaaCGTCGAAAATTCCGGA
i caeRem4.Crem_Contig0  C 0 I 1149
e caePb3.Scfld02_0      1515631 1685 +  4147112 I
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I

a score=0.000000
s ce10.chrX             3150479 652 + 17718866  
e caePb3.Scfld02_0      1515631 1685 +  4147112 I
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I
e caeRem4.Crem_Contig0   330506 1149 -  4500979 I

a score=200.000000
s ce10.chrX             3151131 2 + 17718866 CC
s caeRem4.Crem_Contig0   331655 2 -  4500979 CC
i caeRem4.Crem_Contig0  I 1149 C 0
e caePb3.Scfld02_0      1515631 1685 +  4147112 I
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I

a score=-368.000000
s ce10.chrX             3151133 41 + 17718866 ----TGAACAACAATAACCTTTTATTCTAAAC------ATCATCTCAATGC-
s caeRem4.Crem_Contig0   331657 52 -  4500979 TGAACAATCAATCAGTAACCTTCAAACGTAATCAAAACACTCATTGAACATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1517316 42 +  4147112 ----TAATCAGCAGTCGACCTTCAATCGTAAG------ACCGTTTGAACGGT
i caePb3.Scfld02_0      I 1685 C 0
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I
e caeSp111.Scaffold629   422685 9875 - 33334924 I

a score=2505.000000
s ce10.chrX             3151174 11 + 17718866 GGTGCCACATG
s caeRem4.Crem_Contig0   331709 11 -  4500979 CGCGTCATTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   432560 11 - 33334924 GGCGTCACATA
i caeSp111.Scaffold629  I 9875 C 0
s caePb3.Scfld02_0      1517358 11 +  4147112 GGCGTCACAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  146547 3903 +   227596 I
e cb4.chrX              8195957 14335 + 21540570 I

a score=20903.000000
s ce10.chrX             3151185 56 + 17718866 GAACGCGGCGTTGACTTTATTTCCAAACATATTTGC-ATTGAATTCGGCGAACGA-TC
s cb4.chrX              8210292 48 + 21540570 GAACGCATCGT--ACTTTATTTCCAAACATGTTAGCTATTGGAATAATC--------C
i cb4.chrX              I 14335 C 0
s caeRem4.Crem_Contig0   331720 55 -  4500979 GAACGCATTTCA-ACTTTATTTCCAAACACATCTGC-ATTGAATTCAGCGAACAA-GC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   432571 53 - 33334924 AAACGCATGGTT-ACTTTATTTCCAAACAATTTTGC-ATTGAA---AGTGAACAATtc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1517369 55 +  4147112 GAACGCGTAGTA-ACTTtatttccaaacatttttgc-aTTGAATTCAACGAACAA-TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  146547 3903 +   227596 I

a score=77374.000000
s ce10.chrX             3151241 356 + 17718866 AAAGCT-TGAAA---AGAAAAAGTTAATAGTT--------------------------------AAGTGGTTAAGTGGTGGAGAGCGGGGGACAGGGGACAGGAAAAAAAT-AAGGAAGTTCGA----TTAAAAAAAGTGAATGAAAAATATA-GAGAACGAG----------------GAACCAAATCATTTTCCAACAGT---------------------------TCGTATCGAAACAGCTTT--------------AAGGTTAAAAATGTGAATGATTTGAG----------------GATGTTG-----TTG--------GTAT--G--AAAGT--AATACATTAAATAGTGTACATGTACCAATTGAAAAG----------CATTC---TGGTTTATTTT---TCGGT---GCGTTTGACAGATTGAACTCTCTTCAGGATGCTGCTCATTTGCTTTTTGAACTCCTCATCTTCAGATTGATTTTGGGACATACGCTGCAAA
s cb4.chrX              8210340 368 + 21540570 AAAGCTCC-AGACAGAAAATAAGCTAATA---------------------------------------GGTTAGGA------------CGGACAGGTGACAGACAAAATAT---------------------------------------ATA-TCATACGAA-------------CTTGAATCACGTCATTCCTTAGTCAGTGAGACAGTTGATTTAAAGAACGGAAGTGAATAAGGAACA------------AATATAAAACATGACGATTGGAATTGGGTGGAGAGGATGATTAATAGA-AATGACG-----GTGGTggtggaattcaaa--aaagg--aatataTTAGA-ATTGTACA-------CTCTGAAAGATGGTGGatctgatt---tttcttattcCTCGTTGGT---GCGCTTGACAGATTGAACTCTCTTCAAGATGCTGCTCATTTGCTTCTTGAACTCCTCGTCTTCCGATTGGTTTTGGGACATGcgctggaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   331775 338 -  4500979 AAAGct-c-agaaagagaaaaggcTAATAGTT--------------------------------AGGTGATTATTT------------GGAACAGGTGACAGACAAAAAAT--------------------------------------CATAGTTAATTGAA---------------TGAATCACGTCATT--TTAGT------------------------------TGACTATGAGACAGTtga----tttaaagaaaaaagtgaaaat--aaaacatgatGAGGGGGTGATTAATAGAGAACGACG-----TTG--AATGAAACTT--C--AAAGG--AATATATTAGA-ATTGTACAAGT-TCGTTCGGAAAG----------TATTC---TGGTTTATTCC---TTGGT---GCGCTTGACAGATTGGACTCTTTCCAGGATGctgctcattttcttcttgaattcCTCATCTTCCGATTGGTTTTGAGACATGCGCTGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   432624 334 - 33334924 aaagct-c-aaa---aaaagaagctaaTAGTT--------------------------------ATGTGATAAAAT------------AAGACAAATGACAgacaata------------------------------------------ata-aaaaacatgaagaaaGTAATCAATGGAATCACGTCATTG---------TG-------------------------TGACAGTGAATTGGTTTT-----CAAGCG---AAGTTTATCA---ATAATAAGTGA----------TAATGTG-AAtgacg-----ttt-ttttcaatttt--c--aaagg--aaTACGTTAGA-ATTGTACAAGA-TCGTTCGGAAAG----------TGTTT---TGGTTTATTCCTCAGCGGTGGGGCGTTTGACAGATTGAACTCTTTgcaaaatgttgctcatcttcttcttgaacTCCTCGTCTTCCGATTGATTTTGAGACATACGCTGAAAA
i caeSp111.Scaffold629  C 0 I 19
s caePb3.Scfld02_0      1517424 342 +  4147112 AAAGCT-CGAGA---AGAAAAAGCTAATAGAT--------------------------------AGGTGGTTATTC------------GATTTAATTGTAagacaaaa------------------------------------------tta-aaaaatggg------------aACTGGATCACGtcattgtttgatttttt-------------------------tgatagtgaAACAGTTCG----ATaagtgaaaaagttcaaaa---aatataagataAG--------TGATGTG-AATgacgtgtttttt-ttttgaaattt--caaaaagg--aatACATTAGA-ATTGTACAAGT-TCGTTCGGAAAG----------TGTGC---TGGTTTATTCCTCATTGGT---ACGCTTGACAGATTGAACTCTCTTCAAGATGGTGCTCATTTGCTTCTTGAACTCCTCGTCTTCAGATTGGTTTTGGGACATGCGCTGAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  150450 384 +   227596 aaagtt-t-gaaaacaaaaaaaaacagtagaTCAAAAACCTTTATTCACAGTTAGATTGCGGAGAACTGGCAAAAT------------TAAACAATTGCCAAGTGGGGTggggaagaaattcaaaaacttaggaaaagttaaaaaggaaagga-aaggacggg------------aacgggaac---------------------------------------------ggggagaggaaTAATTAACCACACCacaagaaaatttc-------aatttcttcAGAAAGAATGGTTA------AATGTGG-----TGA-----------T--C--GGGGGTCAATAGATTAGG-ATTGTACAACC-TCATT-GAAAag----------tgtttcaattttttattcctcGTTGGT---GCGTTTGACAGATCGGACTCTTTTGAGAATGCTGCTCATTTGCTTCTTGAATTCTTCGTCCTCCGATTGGTTTTGTGACAtgcgctg----
i caeJap4.Scaffold17545 I 3903 C 0

a score=-12897.000000
s ce10.chrX             3151597 51 + 17718866 AAAATACCGGTTACTCATTTTTTTTTTTGCA---------------AAATGT--------TCTGCGATGTTTAG
s cb4.chrX              8210708 23 + 21540570 -----------------attgaatttttat----------------------------------caattttgga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   332113 23 -  4500979 -----------------TATTGCTCTGTTT----------------------------------CTAGTTTCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1517766 26 +  4147112 --------------CTGTTGAAGTTTGTGC----------------------------------TGATCATTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  150834 67 +   227596 -------aaatttttttttttaattttttaattttagtttaGAGCCAAATGTCTGTCTTCTTAGCAATGCTTAG
i caeJap4.Scaffold17545 C 0 I 9
e caeSp111.Scaffold629   432958 19 - 33334924 I

a score=-35917.000000
s ce10.chrX             3151648 335 + 17718866 TTGTTTAACTTT------CAAAACTGCAGTTCCCACGGTTTCATTCATTCAAAAAACTTTTTTACTATGTCTAAACTTTCAGGGTGTTTTAGTAAATTTTTGTTATGTTTCACGTGAGAAAATACGTGGCTTTCTAAAATTTGTTTTCGAGG---TTTGAAAGTATGGATGTTTGGACTTTAACCC-TAAGTTGCAAATGATAAGGGAATGAAAACATTTGATTTAGTGATTGTGCAGTGAATCTTGTAAGATTTGGTCTTACTAAGATTTGATTTTACTTTTGTAAAACTCTTACCCACTTCAAAATAGACACAGAAAAAGTTTTGTCTAAAGTTTTTCAAAAG---------
s cb4.chrX              8210731 122 + 21540570 cttttcttattt-------------------------------tgatatatcg---------------------------------ctc-------------ttatttatt-------------------------------gtttttgttgcTCTTTGAAGTTTCTACTTGTTG----TTATTCA-TAATT-------------------------------------------------------------------------------CATTTTGTACTTGGGGC---------GACTTCTA---------------GCCTTT--------GTAgtagaaaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   332136 156 -  4500979 AAGTTTGTATTT-------------------------------TGTGTTCTAGGA----------------GAAGCCGGAAACATGCTT-------------TAGGGTACTTCACACG------------------------GATTTAGTAGAACTTT--AACTACAAATTTTTG----TTAACCAGTacgt-------------------------------------------------------------------------------gtttttgtttttgtgca---------CTCATCCAAAC------------Accttt--------tttgtgagaaaaagtaaaag
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1517792 235 +  4147112 TTTGATTTGTTTGTGAGAAAGAACTCAAGTACT-----TCTCACGTTTTCTCTAAACCTTTTTG-------AAAGccttgaaaatgttt-------------tcaagtttGGCGTGAGAAAGTGCGTGA-------------GTTTTAGTAGGTTTTT--GGCAGTGAATGTTTG----AACTCCA-TTCGT----------AAGATcacaaaaagattcaaaatgaGGAATGAGC--------------------------TAGAGGGGACTTTCCAAATTGTAAGA---------TTCTTcgaaac------------ccaatt--------tttttcaacag---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  150901   9 +   227596 I
e caeSp111.Scaffold629   432958  19 - 33334924 I

a score=-1781.000000
s ce10.chrX             3151983 59 + 17718866 CTAGGTGAAACTGAATAGTTTAAACTACGtcttgcgcaactcttgctcaactcttgcca
s caeRem4.Crem_Contig0   332292  9 -  4500979 t----------------------acTACTTC----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1518027  0 +  4147112 C
e caeJap4.Scaffold17545  150901  9 +   227596 I
e cb4.chrX              8210853  0 + 21540570 C
e caeSp111.Scaffold629   432958 19 - 33334924 I

a score=-6413.000000
s ce10.chrX             3152042 46 + 17718866 aactcttgcAAAAAGCTAGAAGAGCGAAATAGAGG--------TGCTTTTATCT--
s cb4.chrX              8210853 25 + 21540570 ------tacatataaaC-------------ACTGG--------TGTTTGGA----C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   332301 32 -  4500979 ------TGCATATAACTCTA----------AGTGG--------GGGTCTCACTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   432977 38 - 33334924 AACTCTTGGAAGCAGTCAAA----------AGCAGCAATATACTGTTT--------
i caeSp111.Scaffold629  I 19 C 0
e caePb3.Scfld02_0      1518027  0 +  4147112 C
e caeJap4.Scaffold17545  150901  9 +   227596 I

a score=-2909.000000
s ce10.chrX             3152088 17 + 17718866 TTCCAAATTAAAA--T---ATT
s cb4.chrX              8210878 20 + 21540570 TTTTAAATAGAAT--TTAGGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   332333 16 -  4500979 TTTCAAAGTGGAT--T----AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   433015 16 - 33334924 TCCGATATTGTATAGT------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1518027 14 +  4147112 ttctGGATTCAAT--T------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  150901  9 +   227596 I

a score=321606.000000
s ce10.chrX             3152105 789 + 17718866  
s cb4.chrX              8210898 667 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   332349 728 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   433031 742 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1518041 686 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  150910 769 +   227596  
i caeJap4.Scaffold17545 I 9 I 61

a score=-8901.000000
s ce10.chrX             3152894 82 + 17718866 TTGATCAAGGCGTAGCAGTTTGAGAATTCAGTGGCCTGGGGTGACAGAAATG------AATTATAAATTATGACAAA------GTCAAATAAAA
s cb4.chrX              8211565 66 + 21540570 TTGATTAA-----AAGAC-TAGTGA------------AGAAGGGGTGAACTG----------TTTGGGGGTGTGGAGgcttttttctccttcct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   333077 75 -  4500979 TTGATTAAGACGTAGGAG-TGGAGA------------AAAGGGGTGAAACTGTACCAAAAACTTTGATGATGATAAG------TTGAAATAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   433773 55 - 33334924 TTGATTAAAGCGTTGGAG-TTAAGT----------------AAATGAATGTG-----AAAAGTTAAGAATTGAGtag-----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1518727 71 +  4147112 TTGATTAAGGCGTAGGAG-TTGagta----------tgaaaaattaaaaatg-----aaaaagtgaggaataagttg------agaaaaaaaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  151679 61 +   227596 I

a score=25404.000000
s ce10.chrX             3152976 275 + 17718866 CTGCCTCC------------GCAAATCAAAA-AAAA--------------AAGAAAGAAAAA-----GAAACTTAAATTTTGA-----AACTAAGTACGTATTTGTATTAACACTTGCCTCCTCCTCC-TCTTCAATTCACC--TATGACTCAAA-----CCGGTAGACATTGGTGA-AA----------------TAGAAACATTCAACAAATACCTGGAGAAAGCCCC---ACTAGTTG------------TGTGA-TGACTAAACAGCATGAACAATTAGAACGTATAAT------------------------------TTAAGAAAAATAGAA------------------------AATCGTACAGTTTCG-TTAGAA-----------G-------------AGAAATGACCGACGGCGGG-CGTC
s cb4.chrX              8211631 356 + 21540570 c-------------------GAAAATCAAATAAGATTTTTAGTTATGAAAAAGTTAAGGTTA-----AAAGTATCAACATTCA-----A---ACCTCCTTACTT----------------------------CCCACTTACCAGTGTGAGTCAGAATAGACCGGTAGAACTGGGAGGAAAAGGGGACTATAAGAATAAAAAACATTCAACAAATACCTGGAGAACGCCCC-ACA-CAGTTG-GTTCGGGGCGAGATGACTAACTAAACAGTATGAACAATTAGATCTGAAAGTGGGCAAAAATGAGAAGTGGAAGGGGGTGGAAAACGAAGAGAGGAAGGGATGGTG-----------GTGAAATCGTATAGTTTTGGTTGAAAAGTGGAAAGAGG--GAAGGAGACATACGATTTGAAAAAGGCGGG-TATC
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   333152 308 -  4500979 CGA-----------------GAAaatcaaat-agattttttgtt------gaattcaggaaa-----aaagagaaaaaatgcagAACGA---AACTACTTATTTGTATCAAC-----------CCACC-CAATCCATTTACCAGTATGAGTCAGAATAGACCGGTAGAAgacggaagaaa----------------aaaaaacactcgaCAAATACCTGGAGAACGCCTCAACACCAGTTGCGTTCAGAG---GGTGATTAACTAAACAGCATGAACAATTAGAATTGAaagt------------------------agttgaaaaagaagagaggaa--------------------gtGAAATCGTATAGTTTTGTATGAAA-----------G--GATGGCG----AAGATTGGACGAAGGCGGG-CATC
i caeRem4.Crem_Contig0  C 0 I 10785
s caeSp111.Scaffold629   433828 315 - 33334924 ----------------------aaatcaaat-aaaatattgg--------aagaggaaaaaaaaagtgagaattgaatttgaa-----g---aaagaattaTATGTATCAAC-----------CCACC-CAATCCATTTAACAAAATGACTCAGAACAGTCAGTTAga----------gg----------------aaaaaacatttaacAAATACCTGGAGAACGCCCCTGCACTAGTTG------AAG----GTGACTAACTAAACAGCATGAACAATTAGAACTGAAAGT----------------------AGGGGGGAAaggggagaaaagaagaaggggcGAGTTGGTTGAAAGAGAATCGTATAGTTTTGGTTTGAAGACTGT-----GTTGATGGTT----TAAATCGAAAGGAGGCGGGCCGTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1518798 308 +  4147112 --------------------gaaaatcaaac-aaact-tcag--------aagttgaa---------gaaatttgaaactgga-----g---AACTACTTATTTGTATCAAC-----------CCACCTCAATCCATTTACCAGTATGACTCAGAATAGACCGgtagaaaaaggaag-ga----------------aaaaaacattcaacaAATACCTGGAGAACGCCCCAACACTAGTTG------AAG---AGTGACTAACTAAACAGCATGAACAATTAGAACtgaaagt-------------------------gggaaaaaagaagagaggggggggggggg----ggttgaaATAGAATCGTATAGTTTTGGTTTGAAGACTGG-----G--GATGGTT----GAGATTGGACGAAGGTGGG-CGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  151740 237 +   227596 ---CCCCCTCCGCCTACTTAACAAATGAAAG-AAACTAACTttc------gaattgacaaaaattttgaaaaaaaattctctt-----t---gCCTACTTATTGTGTTCAGC-----------CCACC-CGATCCATTTA-CACGATGACTCACGT----------------------GG----------------AAAACGCCCTAGGTGAACAATTA----------CAACTGTAAATG------------GGTGA-TGGACGAGCGGTTCGGAGACCCGGCACGTATAGT------------------TTTGATGGGGGGAAAAGTGGAAAAGAAGGCGGTGTC--------------------------------------------------------------------------------------
i caeJap4.Scaffold17545 I 61 C 0

a score=37616.000000
s ce10.chrX             3153251 88 + 17718866 GCCGAG-TTATCAGCCAACAATTACACTTTTGATGGTGATTTAAGATAAGGCGTGGTTA--TGGAGCCTGT-----ACT-GACTGACCTGTGTGTGT--
s cb4.chrX              8211993 86 + 21540570 ATACAGTTTATCAGCT--CAATTACACT----GTGCCGATTTAAGATAAGGCGTGGTTG--TGTC-CCCTCTCTGTACTAAACTGACC--TGCGTGC--
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold629   434143 83 - 33334924 ATGCAG-TTATCAGCT--CAATTACACTCTT-GTGGTGATTTAAGATAAGGCGTGGCTG--TGTC-CCTAC-----ACTAAACTGACC--TGTGTGT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1519106 84 +  4147112 ATACAG-TTATCAGCT--CAATTACACTTTTGGTGGTGATTTAAGATAAGGCGTGGTTG--TGTC-CCTCC-----ACTAAACTGACC--TATGTAT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  151977 89 +   227596 --ACGG-TTATCAGCT--CAATTACACTTTG-GTGGTGATTCAAGATAATACGTGGTTGGTTGTC-CTTGA-CTGTACTAAACTGAGC--TGTGCGTGT
i caeJap4.Scaffold17545 C 0 I 1627
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=2102.000000
s ce10.chrX             3153339 105 + 17718866 TGTACGCTTCACTTTTATAACCCTTTATGCCGATTTCAGTGGTGATAAGGAA--------GCGTATGGAGAACTGA--AGAGATTATGCAAAAGTTTGATGGCGAAAAGAGAATA-
s cb4.chrX              8212079 100 + 21540570 TGTA----CTGCTTTTATAACCC------TTTTGTTCA-TGGTGCTCTGAGAAAGAAAGTGTTTGATAAGAACTGGGAAAGTGCTCCAGAGGGGACGG-----GCCAAGGGGAATa
i cb4.chrX              C 0 I 1183
s caeSp111.Scaffold629   434226 103 - 33334924 CGTATGCCTTGCTTTTATAACCACCTTTGTCTTTCTCA-AGGTGCTCAGCAA--------TACTGATAAGgaca----aatgaaaagaaggaaaagagagcaCGAAATTAGGAATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1519190 100 +  4147112 TGTATGGCTTGCTTTTATAACCCTCTACGTCTTTCCCG-ACGTGCTCATAGA--------GCTTGATAAGAACACAG-AATTGCTatatggaaaatg------gaaaatggaagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=7637.000000
s ce10.chrX             3153444 138 + 17718866 GGAAGAA--AATACTGTTATGGTTTTTA---CGGTGCAACTGAGACTGAAATTTCAAATTTTGAATCATGTTCAACTCGGTATAATCTGATAATAAGTGCTAGAAAATGTCGTGATTTTATTAAAGTGCAAGAAAAGTAAAGA-----
s caeSp111.Scaffold629   434329 132 - 33334924 GGAGGAAGGAATACTGTTTTGACTTTTGGTTCAGTGCTA----GAACAAagtttggaaatttgaattcaaactGAGTCGCTGTAATTAGATAAAAAGGTTAAATGAAC-------TGTTCGCAAAGTGCATGACATTTAAAGA-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1519290 123 +  4147112 ggaggaaggaATACTGTTTCGACTTTTGGTTTAGTGcta-----atgaaaatttcaaaatttgaatttgaat----------gaatatgaTAAAAAGTACCAATGAAC-------ATCCACTAAAGTGCATGTCA---AGAGAAAGGA
i caePb3.Scfld02_0      C 0 I 435
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e cb4.chrX              8212179 1183 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=111.000000
s ce10.chrX             3153582 25 + 17718866 AGTGTATGATTCTTGATTTCGAAAT
s caeSp111.Scaffold629   434461 20 - 33334924 CATTTCgga-----agtttcgaaat
i caeSp111.Scaffold629  C 0 I 258
e caePb3.Scfld02_0      1519413 435 +  4147112 I
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e cb4.chrX              8212179 1183 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=0.000000
s ce10.chrX             3153607 1029 + 17718866  
e caePb3.Scfld02_0      1519413  435 +  4147112 I
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e cb4.chrX              8212179 1183 + 21540570 I
e caeSp111.Scaffold629   434481  258 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=22.000000
s ce10.chrX             3154636 18 + 17718866 TTCACGCCTGGCGCAATG
s caeSp111.Scaffold629   434739 15 - 33334924 TTCACGCTCGATT---TT
i caeSp111.Scaffold629  I 258 C 0
e caePb3.Scfld02_0      1519413 435 +  4147112 I
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e cb4.chrX              8212179 1183 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=10366.000000
s ce10.chrX             3154654 295 + 17718866 TTTAATCTATCGATCACT-CTGATAGTTCG--ACACTTGGTCGACATA-GACCGGAAGAGCATAAAACTTCCTTTTACCATTCCTAGTTACGTCAGATGATTTTATT---------GGGGCGAGACATGACGCTTCTTCTTCATTTTTTTTTTAGCTACTTACCCTGTTAAAAATCGAA--GTCAAGCGGTGACAAAAA--------------CACAATTTTGTGAACATGGGCAAA--GGAAAGAAT------------TAGGCAACCAAAAAAAAC--------AGT--GAACAGGAGACTTGATTTCGGGGACGACGCGGCGCGACTGGTGTG--CTCA---GCATAACA-----
s caeSp111.Scaffold629   434754 315 - 33334924 TCTAATCTTTCGGCCTGT-TTGATAACTCTTGTCAGTCAATCTAAAAAGGACCGGAAGAGCGTCAAACAAA---TGCCCATTTGTGTTTACATCAGATGAGTTTATCGCCTGGAAGGGACCGAGGTATGACGTTG-------------TTTCTCG--------TCTACCGGAAATTAAACTGATGTGCgtgaggaagaaaaaacacagtGCTAAATGATGTTTTGAACAT-TGCAAAACACAATGAGA-----ACTGTCatcggagaaga---aaaaccagaGGGAAATTCGAGCGGAA-----GATTCCGGA---GGCGCATCGACACGAGTTCGTACACACACCCATCACACACT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1519848 307 +  4147112 TCTAATCTATCGGCTCACGTTGATAACTTT--GCAGTCAATCGACAAAAGAACGGAAGAGCATGAAACG----------TTTCCTGTTTACATCATATGAGTTTATGGTCTATAAGGGACCGAGACATGacgttg-------gttttttttcaaa--------ctcaccgGAAATCAAATGATAGAGCattaacaaaagaaaac---------agtgaggttgtgaaaat-gacaaa--aaaacgagaaaaacatggtcattggaaaataaagaaaactagGCAAGAAT--GAACGGAA-----GATTCCGTA---ATCGCGGAGACATTGGTTCG--CACACACTCACAACACACTa
i caePb3.Scfld02_0      I 435 C 0
e caeJap4.Scaffold17545  152066 1627 +   227596 I
e cb4.chrX              8212179 1183 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=4379.000000
s ce10.chrX             3154949 28 + 17718866 TGAAAACGAGACAGGGAGTGCCCCTCGA-------------
s caeSp111.Scaffold629   435069 25 - 33334924 AAAAAACGAGACAGGGAGTG---TTCGA-------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1520155 25 +  4147112 aaaaaaCGAGACAAGGTGTG---TTCGA-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  153693 38 +   227596 TAGAAATCAGGCGGGGAGTG---GCCGGTCCGCCGCCAGGC
i caeJap4.Scaffold17545 I 1627 C 0
e cb4.chrX              8212179 1183 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=54088.000000
s ce10.chrX             3154977 101 + 17718866 TGCTTACCGTTGAGCTCATCTTTTGA---TGGAGAGAAACA--GTGGGCG--------GACAAG-GT---------------TTGCC-----TCCGTCATTAGTCATTTTGCCCTTGTTGGCAAATATGGTTTTT
s cb4.chrX              8213362 133 + 21540570 TGCTTACCGTTCGGCTCATCTTTTGG--AAGGAGAGAAACACGGTGGGTGGTGGTGGAGACTAGTGTTGCGACGACCACACATTGTCTCCTTTCCGTCATTAGTCACTTTGCCCTTGTTGGCAAATATGTTTTTT
i cb4.chrX              I 1183 C 0
s caeSp111.Scaffold629   435094 115 - 33334924 TGCTTACCGTTAAGCTCATCTTTTGG---AGGAGAGAAACA--GTGGGTG--------GACTAA-GTTGCGACCA-CACACTTTGTC-----TCCGTCATTAGTCACTTTGCCCTTGTTGGcaaatatgtttttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1520180 113 +  4147112 TGCTTACTGTTGGGCTCATCTTTTGG---AGGAGAGAAACA--GTGGGTG--------GACTAG-GTTGCGAC---CACATTTCGCC-----TCCGTCATTAGTCACTTTGCCCTTGTTGGCAAATATGTTTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  153731  95 +   227596 TGCTTACCGTACAGATCATCTTGCGAACAACAACAGAAACA--GTGGGCG--------GACTAG-GT---------------TTATC--------------AGCCGCATTGCCCTTGCAGGCAAATATATGTTTT
i caeJap4.Scaffold17545 C 0 I 831
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-520.000000
s ce10.chrX             3155078 2 + 17718866 --GA
s cb4.chrX              8213495 2 + 21540570 GG--
i cb4.chrX              C 0 I 35
e caePb3.Scfld02_0      1520293 0 +  4147112 C
e caeJap4.Scaffold17545  153826 831 +   227596 I
e caeSp111.Scaffold629   435209 0 - 33334924 C
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=305.000000
s ce10.chrX             3155080 33 + 17718866 CTAGGGGCGAATTTTTTCGTTTTTTTCTCCTTC
s caeSp111.Scaffold629   435209 24 - 33334924 --------ggattgaT-CGCGCCGTCTTCCGAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1520293 25 +  4147112 --------GGATTGATCCGCGGGGCCGTCCGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  153826 831 +   227596 I
e cb4.chrX              8213497 35 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=2422.000000
s ce10.chrX             3155113 585 + 17718866  
s cb4.chrX              8213532 565 + 21540570  
i cb4.chrX              I 35 C 0
s caeSp111.Scaffold629   435233 614 - 33334924  
i caeSp111.Scaffold629  C 0 I 59
s caePb3.Scfld02_0      1520318 461 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  153826 831 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=74.000000
s ce10.chrX             3155698 17 + 17718866 ---ATAGTGCGTTTCGGGAT
s cb4.chrX              8214097 17 + 21540570 ---attgtgaaatttgaaat
i cb4.chrX              C 0 I 15
s caePb3.Scfld02_0      1520779 14 +  4147112 TCAGTT------CTCgaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  153826 831 +   227596 I
e caeSp111.Scaffold629   435847 59 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-5797.000000
s ce10.chrX             3155715 483 + 17718866 AATATTGAAAATAAATAAGAAGTTTCTGTTGGAAACTGGGGTTttttttacgtagagactcaaagtgtgctcaaatgaacaaatttcgcaatgcaacttttcaaaattttttcaaaattttttaatgatggttcgaacattcaaaaaaaaatcgcctaattttagctaaaatctccaaatttctgcaatttttTTTGTGaagataaatttaaagcc--gttaggtaattatt----tttagtcacctatcggcattaaatgtatcttacttatagaaataacgtgaaataccgaattatgcaatatagaatgatatttcagaa--aaaagtcaactttggg-tcgctgcgatataaaaaaatggccaaaattgaaaattttacctaacattaggcgatttttttctaaattctgaaaagttttattacgaagtttgtttatgTCAGCAAATTATGGGGTTGTACCTAGATATTACCACGAACCATGCCTTCT
s caePb3.Scfld02_0      1520793 272 +  4147112 gata----------agaaatagTTCTTAGTAATAACT----------------AGAAAACAAAATCGTG----------------TGGTTGTTTATCTATTCGGAATCGT----AAAGTATTCTATGGCCGTTGG----TGCAAAAACGA---------------------------------------------TATGAAAACGGTTTGAAAGTTTGGCTACGTCAGTGCTCGCATTTGATAAGCAAGTG-CAGTGAGTTTGAATTGGGAATAGGAAT--TGCGAAATAGCT----------TATGGTGTGAGAATTTAGAATCGGAACTGTACATTGGAATCGTTTccgttt----------------ttgaaactctttccTAAAACTAAAC------------------------------------------------------------------------------------------------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  153826 831 +   227596 I
e cb4.chrX              8214114  15 + 21540570 I
e caeSp111.Scaffold629   435847  59 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=32393.000000
s ce10.chrX             3156198 299 + 17718866 TAAAAAAATAGTGCAA---CATCGTTAACCTACGTGTTCC--TACACAGTTTCACTCACAAAAGGTGCCATACACATTCAATTTGCATAAACCCTAAACCTTTGCGCGATTTGCATATTGGAATGCAATCCGACTGCAGAC-CTAAAGCACAG--AATCAC------TTTTCAATAAACTTGATTGATTC--------------------GGTCGGAAGAGATTGAAAACAGAAACGAACAGAAAAAGATTGGAAATGCGAACACGGAGA------AACACCCACAAAGACAACTTTTTTGGAGCGGGGGTAGGAGGGGGGGGGGGTGACAATG------ACGAG
s cb4.chrX              8214129 264 + 21540570 tagaaaaatcaTGAACAAATGTCGTTAAGCTACGTGTTCC--TCTCTTCTACAA--------------------AACTCTATTTGCATAAATCCTGC-----------ATTTGCATATTCGGATCTAATCCGACAGCATTTTCCTTTACACCT--CTACACAGTTTCGCTTCTATAAACTTGATTGATTCATTTGTAGAAATAAA--AACGACCAGGGTGAagtgaaatcgaaaaagacaggaagagaagaagaagaacgaacACACCGA---------------A---ATAATTT--------------------------GGGGCGTCAAGAATGAAGAGAAG
i cb4.chrX              I 15 C 0
s caeSp111.Scaffold629   435906 275 - 33334924 TAAAAGAGAAGTACAG---TGTCGTTAACCTACGTGTTCTCACTCGTCATGTAAC-------------------AATTTCATTTGCATAAGCCTTTT------GGTTCATTTGCATATTGGAATCAAATCCGACAGC-----CCATAGCACAG--AATCACAGTTT-GTGACTATAAACTTGATTGATTCATCACACGGATCGGAATAGCGACAGGAAGCGaatgaaaacagagaatgaaataaaaactgaagGAAGGCGAACACACGGACGGCGAAACACCCACA--GACAATTT--------------------------AGGGCGTCAAAA------TGAAG
i caeSp111.Scaffold629  I 59 C 0
s caePb3.Scfld02_0      1521065 263 +  4147112 TAGAAACAGACTACAC---CATCGTTAACCTACGTGTTCC--CTCGTCATGTTGC-------------------AATTCAATTTGCATAAAACCTCCAA----GGTTCATTTGCATATTGGAAGCAAATCCAGCAGA-----CCATAGCACagaaaatcacagttt-tctACTATAAACTTGATTGATTCATCGGACGGATTAGAATAGTGACAGGAAACAAacgaaag--------gaaagaaaaac-----gaagccGAACACACGGACAGAGAAACACCCACA---ACAATTT--------------------------GGGGCGTCAAGA------TGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  153826 831 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=51657.000000
s ce10.chrX             3156497 208 + 17718866 AGGTAATGAACGAATGACCCACTTCTCATT-TATGTAG---TTTTTAAATGGAC---------AAGAAGAGAGTGG--GTGTTAACTTATCGATGAGTAATTGGAA-----AATGGAAGACTGAACAGAAAGAGTGACAGATTTGGTGACTAATGAG----------------AAGAT--AGAAATGGTAATGAACAAAAAGATGA---AAAAAGATGGAATATCTTTTGC--TGGAAAATGCGATTAAGG
s cb4.chrX              8214393 206 + 21540570 AGGTAATGAACGAATGACCCACTTTTCATTATATGCAG-tttttttCAACCACAGTGGGACGGCGAAAGAGAGTGG--GTGTTAACTTATCGATGAGTAATCGGAaa---taatgaagaaa---aatggtgGCAAGAAAGATTTTACGACTAAGGATGGAGAAAAGA------TGGAT--AAGTCAGGG--------------TGG---GAGGAGATAAGGAAAT--------GGGGAAACACCCTCG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   436181 197 - 33334924 AGGTAATGAACGAATGACCCATTTTCTATtatatgtag---tttttcaacaaga--------agaggagagagtGG--GTGTTAACTTATCGATGAGTAATCGGGA-----AATGCAGAAT--------------GAGAGATTTGCTGACtaataagagaagaaagagagaaaaagatgagggTATTGT--------------CGG---GAGGAGATAAGAAAATCTCAAT--TGGGAAACACCCTAT---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1521328 190 +  4147112 AGGTAATGAACGAATGACCCACTTTCCATTATATGCAG---TTTTTCAACTGG----------GAAATCAGAGTGG--GTGTTAACTTATCGATGAGTAATCGGAA-----AATGCAGAAg---gtagagagaaagagagatttGCTGACTAATGAG----------------AAGAT--GGGAATGGT--------------TGG---GAGGAGATAAGACAGTCTCCTTGATGGGAAACACCCTCG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  154657 196 +   227596 AGGTAATGAACAACTGACCCATTTCCTATTATATGTGGGTTTTTCTAAATGAGAAGAAcactgtgtgtgtgtgtgggtgtgtTAACTTATCGATGAGTAATCGAAAAAGGAGATGGAAAAAGAtaaagggagagagagagaaatagTGACTAATTAGAA--------------AAGAT---GGAATAAC--------------TGGCCTTAGAAGATAAGAT-----------TGGGA-------------
i caeJap4.Scaffold17545 I 831 I 16
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-151.000000
s ce10.chrX             3156705 14 + 17718866 CGTGAGATGAATAA
s cb4.chrX              8214599  5 + 21540570 ---------AAAGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1521518  0 +  4147112 C
e caeJap4.Scaffold17545  154853 16 +   227596 I
e caeSp111.Scaffold629   436378  0 - 33334924 C
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=3877.000000
s ce10.chrX             3156719 23 + 17718866 GATAAAAACTTCTAAATGAATCA
s cb4.chrX              8214604 14 + 21540570 GATAAAAATTACTG---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   436378 15 - 33334924 GATGAAAACTACTG--------C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1521518 15 +  4147112 GATGAAAACTACTG--------A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  154869 23 +   227596 GATGAGAACTTTGAAATGAAtca
i caeJap4.Scaffold17545 I 16 I 2769
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=5460.000000
s ce10.chrX             3156742 148 + 17718866 ATGACGAATGGTTTATCATGAA-GAGGAT-------TTGTGAAGAGAAAACC-----ATTTTTAAATTAGAATAAATTACA----------ATGAGAACATGTTTCGGCATATATCAAAGGTGATTT-------CCCAA---------------TACTTGTCTAGGGAGAATTG---------ATCTGATCAGAAATCAGTT
s cb4.chrX              8214618 172 + 21540570 ------AATGGATCATCAAAAAGAAGTATGAGATCATTTCAAATAGATCATC--------TTGAAAC--GCATCAATTATAATTC------AGAAGAACGTGTTTCGGTGAATATCAAAAAGGTTTTGATGGCGTTTTA--------ACTTTTTCCGTTGTCTGAGACAAAATTGCGTCGAAGATCTGACCAgaaatcagtt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   436393 142 - 33334924 ATATTGAATggttcattgaaaa-atgaatggatcac---------------------cattcaaaat--gaatttatt-------------agAGAAACTCGTTTCGGTAGA----------------------TTTCAAAGCacataatttttcttctgccTCAGAC-TGCTTTCCTCTAATATCTGATCAAAAATCACTT
i caeSp111.Scaffold629  C 0 I 830
s caePb3.Scfld02_0      1521533 186 +  4147112 ATGACAAATGgtttatgagaaa-atgaataggatacttccaaattgatgatcttttttttttgaaaa--gaattcatCACATTTtgtcagaagaagaacatgtttcggtaaaaatcaaaaggttttt-------attcaaattacGCAATGTTTTATGTTTCTAA-----TCTGTCTTATAG-ATCtgatcaaaaatcactt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-8177.000000
s ce10.chrX             3156890 159 + 17718866 TTTTGAAAA--TAAC----------------TTCAATTTTTTGGGAGTCGTCGATCGAAAAAAAAGTATTTTCAAATTTATGGTCTATATATTGTAGGCCAAcaaaagctt------agtaattaccaaattttgactgccaataa----------aaaaagttcaaaagttgtttgaaaagtttaacattga
s cb4.chrX              8214790 181 + 21540570 ---tgaaaa--caGAAGAACGTTTCAAAATCGTTTGCCTTATGAAATTACgcaataaaagaaaaaatcccCTCAAAT---CGTGCCTAACTATGAAGTTCTGTAGATTCTGAAGGGGAGATTTCCCTAGAAGTTTGTTGAAAATCCCATATtgctaaaaaaaat----tgtgaagcttaatttttcactttga
i cb4.chrX              C 0 I 96
s caePb3.Scfld02_0      1521719 130 +  4147112 --ttgaaGGGTTAGAAGGACA----------GCCAATCTTATG----------ACAAAAGGACATGTTCTTTT-----------CCTTATT----AATGCAATAAAACTTG-------GACTTTTCCATGATTACACAACAAAGTC----------ACAGAATT----AGTGGCTCTAAGACCTAAAC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-50.000000
s ce10.chrX             3157049 112 + 17718866 tatttggttgttttggccgga----------------caaaagtgtttttgaataataaccccagtggggccgctccacatttaaAAAAATTTCAGGATATACTAAAACAGTGGAAAA-TATATTTGTA
s caePb3.Scfld02_0      1521849 115 +  4147112 -------TTGTATTGTTCAAATTAACAATGGAGCTTTCACAAGACTTATCGGATAGAAAGTACAATGATAAC---TCGTTTCCAATAAgctttta----atttcaaaacgatgaaaaagtACGTTCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e cb4.chrX              8214971  96 + 21540570 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-2002.000000
s ce10.chrX             3157161 45 + 17718866 TAAAAGTTTTTACACATGTATATTGCGTTCAATTGACTTATATTT---
s cb4.chrX              8215067 36 + 21540570 tcagatttctttcacggg------------aattgagatatatgggct
i cb4.chrX              I 96 C 0
s caePb3.Scfld02_0      1521964 30 +  4147112 -CAAAGCAGTATGTC--G------------AAATGacacaaattt---
i caePb3.Scfld02_0      C 0 I 184
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-118.000000
s ce10.chrX             3157206 172 + 17718866 TAAAATTGAAAATATTTTGTACTTTTATATAACCCAACAT-TTGAAAAAAAAATTTTTGTTTATCTATCCATAATAGTTGAACGTGATAAAACATTTCCGAAATTGCCTAAAATTGAGATTTTCATAAGCCTGAGAATTTGAAAATA----AAACCTTATGTTTTTCGTTAAAGTTT
s cb4.chrX              8215103 135 + 21540570 taaagttgacggt-ttggggaTATTTACATAATTTCGCGGGTTTAGAACAACATT---------ATACCCAAAATA----------------CGCACCCGG--ttactgaaaatt---atttttacaa-------aaattgcagatattgaaaaatttctgtttggC----AGGTCT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1521994 184 +  4147112 I
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-26600.000000
s ce10.chrX             3157378 691 + 17718866  
s cb4.chrX              8215238 559 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1522178 679 +  4147112  
i caePb3.Scfld02_0      I 184 I 134
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-977.000000
s ce10.chrX             3158069 117 + 17718866 AGCGAATGCAGTAAACTCAATATG---AAAATATTCACAAACGGCTATACACAATTTGAAAATTTGGAATCGTTATATGGAAAGAATAATTGAAAATGATT---TTTCACCTCACTAA---------ATTCC
s cb4.chrX              8215797 109 + 21540570 A----------TACACTATACATGTACAAAACACTGAGTGACA-CTGAACTCAAC---AAGGTCTAAA---GTTCAATGGTaggaa------aaaatgactgaattacaacccaaaaattcaatgtcatcca
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1522857 134 +  4147112 I
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-646.000000
s ce10.chrX             3158186 4 + 17718866 -ACTC
s cb4.chrX              8215906 4 + 21540570 aaca-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1522991 4 +  4147112 -Acct
i caePb3.Scfld02_0      I 134 I 1
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeSp111.Scaffold629   436535 830 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-769.000000
s ce10.chrX             3158190 4 + 17718866 -----ACTG
s cb4.chrX              8215910 9 + 21540570 attgaaaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   437365 4 - 33334924 -----acCA
i caeSp111.Scaffold629  I 830 C 0
s caePb3.Scfld02_0      1522996 4 +  4147112 -----gaaa
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17545  154892 2769 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=63942.000000
s ce10.chrX             3158194 173 + 17718866 AAAAAAAAAACC---------TAAACAAAATTGTACTCATTCACCCA-----------------AATATGCGTATGT-------TGGAAATAGAAATCGCC-GTG-----ATGAT----TCGTTTTCAATTGTT-------GTTACGCAAACAAAACTAGTAGTGATGCCT--CAATTGTTGTATAATATTTATCTATCTTTTCAGTA-TGCAACTTGCATCGATT
s cb4.chrX              8215919 192 + 21540570 atgtgaagaacCTACAGCACACACACAAAATCGTACTCATCCAcccaaaat--------taacaaaaatgtgTGCCG-------TTGGAATCGAAATCGGTGGTG-----AtgattctctctttttcaattGTTG------GTTACGCAAACAAAACTAGAACTGATGCCT--C--TAGTTGTATAATATT----TATCTATCTTTTATTGGAAGTTGTTTTAACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   437369 179 - 33334924 AATAAAAGAACCAACTG----CACACAAAA------TCACTCGCCCCAATA--------TAAC-AAAATGCGTGTTTTC-----TACGCATTGAAATCGCCGGTG-----ATGAt----tcgttttcaattgtt-------GTTACGCAAATAAAACTAGTACTGATGCCT--CAATTGTTATATAATATT----TATCTTTTCAGTA-TGCAACCTGCATCTACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1523000 184 +  4147112 aagagaagaaccAACTG----CACACAAAA-CGTACTCATTCACCCAAATA--------TAAC-AAAATGCGTGTAT-------GGCGTATCGAAATCGCCGGTG-----ATGAt----tcgttttcaattgtt-------gTTACGCAAACAAAACTAGTACTGATGCCTCACAATTGTTATATAATATT----TATCTTTTCAGTA-TGCAACTTGCATCGAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  157661 208 +   227596 aaaaaataaagcaaat-----cAAACGTAC-AGTACTCGCTCAACTACATACATAGTCGCAAC-AAAATATGTATACATGATGGGGGGCGTTGAAATCGCCCCGGACTGCATGAT--TTTCGATTTCAATAGTTGTTGGTTGTTACGCAAACAGAACTAGTACTGATGC----CGGCAATTGTATAATATT----TATCTTTTCAACA-TGCAACTTGCATCGCTT
i caeJap4.Scaffold17545 I 2769 I 260
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=414.000000
s ce10.chrX             3158367 67 + 17718866 CGCATACTACGGCGCGATTGTCCGT--CAATTTTTTCT-------------AGTTGGAGTGAAAGAGAG--TAGTGTGGGGAAA
s cb4.chrX              8216111 67 + 21540570 CACACAGTTT-----GACtgtcctc----atttttttttcaac--------cgattACCATACGAGTAGAATAATGGAAGTGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   437548 72 - 33334924 CACTCGATTTA--ACGACTGTCctc--caactttttttcctat------tgAGTTACGGAAACAAGTAG--TTATAGGAGGACA
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1523184 80 +  4147112 TACTCGATTTG--ACGATTTTCCCctgcaatctttttttctctattcggTGTGAAAAAGGAATAACTAG--TAATGGAAAGAAA
i caePb3.Scfld02_0      C 0 I 140
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-2951.000000
s ce10.chrX             3158434 72 + 17718866 T---TTTATGGAACA---TTGCATCA-ATCTAAACAAAAGTTACCAGAAC-------AATAAATGATACTTATATAAAAACAAGTG
s cb4.chrX              8216178 72 + 21540570 TTCCATTACTGGATAGAATGGAATTAGggcagaaaaatggaaaatatagaGGAAGAAAAACAGTTTCACATA--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   437622 81 - 33334924 ----TTTACTGTATA-AATTGGATTATATGATCAAGTAGGCTACCATAACTAGATAAAATAAATCCCATTTGAATCAAATCTACTG
i caeSp111.Scaffold629  I 2 I 188
e caePb3.Scfld02_0      1523264 140 +  4147112 I
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-319.000000
s ce10.chrX             3158506 45 + 17718866 TTCA----TCATTTTGAATAATTT---Tacgtgaccttttttgtccatatta
s cb4.chrX              8216250 42 + 21540570 TTCAGAGACCGTATTCATTAAATTCTATTCGcgaactgtttt----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1523264 140 +  4147112 I
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeSp111.Scaffold629   437703 188 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-10522.000000
s ce10.chrX             3158551 268 + 17718866 tgataacgctttttaatgctttttctaagcctg----aaaatgaaa--------gtcaatttcacgtttccattaaCTTATCATTTTGAAAAACAAACGTAAACGT--------ATTGG-------AAAATATTT-----TTGCACCAAACAAACACCCAATAACGGTACTGAAAAAAATAATTAAAGCATG---CTATAAGTTAGCA-------GAATAGAGAACTAGAATGATGGCACAACATTTTTTAAGTTAATTTAGAAATTTTTTCAAGACCTTAGCATTCACAGTTTCAAAATAC----GTAGTTAT
s cb4.chrX              8216292 205 + 21540570 ---------ctttttaaaaatcaattagaagaaagtgaaaattgaa---gaaaaactaatttctt-ttcggaaaatcctaatatttttgtgaattaAGGATATTTC--------GTTGGACGCATAAACttaatt-----ttgcg--------aattttctta------------------tttaaaaaata---ttatttaatCATA-------GAATAG-----------TGTGACAAA------TTCAATGTTATTT------------------------------AGTTTAGAACCCAATGTTTGttag
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1523404 266 +  4147112 TGAGATTGGTTTCTAGAAAGTTGATTAGATTAA----AAAatggaatccaaaaaattgagttcat-CCTTTATTCTTC-ATTATATTTGAG-GCTACGAAAAATTCTTGTAGGAATTTGACACACGAATGTGTTTCAGGGTTGCATAAAATACAATTTCATCAA----------------GTTTGAAGCATAATTTTCGTTGTTCATAACTTCTTGAATA------------TTTGCCCAA------TCAAAGataattcataa---ttttcaaacagcTATCTTCACTGAATGTAAAACCC----TTGGTCAT
i caePb3.Scfld02_0      I 140 I 57
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeSp111.Scaffold629   437703 188 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-651.000000
s ce10.chrX             3158819 420 + 17718866 TTTTCCAGGTAACGCAAAAGTAGGTCCAAAAAAATAATCTACCTTCGAGAAATCATATCTCGGT-TAATCTTAATTTTTTAAAAGTCAATTGAAAAA-GTCAATTGAAGAAAAATTGTATTTTTTCTCAACAGTT-GTTCAAACAACTGTTTCGTGATATTTTTGA--AAAAAAGAGCAAAAAAATTTATACTAAAATGAAGGGATAGCATTCAAGCTTGCAAAAGGAAAAACGGTGTTTACATTAATGTTCAGTGTATCTATGCTCAATGATTGAAAAAGAAAAACTACGAATAACAAAGTCGCGTGTTGAAGTTTGGAAATTGAAATAAAACGGTTTTGATCAATTTCAAAATAGTTTATTTCATTGTTTTATTGAAAAAATTTTGTTGTTTTTCGGTACGTTTACAAAAAAACACCTCGAAA
s cb4.chrX              8216497 312 + 21540570 ttttc----------------aactgaaaaaaagtaacttttttttaaacaa-caTGAATGGATATAACTGCAATTTTTGAGTGATGTGTCGAAAAATGGGAGTTgaa---attctacaattttttagaaaatttagttgaaaaaacaattttctggttttggtAATCAGAAATCACTGGAATAATGTTCAGTAAACT------------TCCAAGCTCGCA-------------TTTTTACTTTAG-------------------------------AAAATAATTTATGAAAAAC---------TATTACAtttaagaaa--gaaaaacagcAACCTCGAAGGATTTCAAAACA------TCTGCGGCTCCTTTGAAGACAT-------------GGCGAAAgtatagaaaa-------gaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1523670  57 +  4147112 I
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeSp111.Scaffold629   437703 188 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-5421.000000
s ce10.chrX             3159239 88 + 17718866 AACAAATATTTTAAAGATTCAATATTGCAAATTTCAATTCCTAACTAAAAGCTCACTTCATTAAAATAAAAATGTT-GAAAAATGCTGC--
s cb4.chrX              8216809 43 + 21540570 ---aaaaaagctacaTATAC-ACGATG-------------------------------TGCAAGA------------GGAGAAGCTTTTC-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1523727 70 +  4147112 AACAAACAGTTTGCAGTTTG-ACATTGC--------------aattaa------actttgaaaaaataaacctACATGCAGAAACATGTGC
i caePb3.Scfld02_0      I 57 I 13
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeSp111.Scaffold629   437703 188 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=5163.000000
s ce10.chrX             3159327 25 + 17718866 AAGCA-------TCTTTTT-----TGGTTGCGCATCA
s cb4.chrX              8216852 37 + 21540570 ATGCATGTCCTTTCTATTTCTGTGTTGTTGCGCAaga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   437891 25 - 33334924 AGGCG-------TCTATTT-----TAGTTGCataaga
i caeSp111.Scaffold629  I 188 C 0
s caePb3.Scfld02_0      1523810 25 +  4147112 AGGCG-------TTTATTT-----TAGTTGCgtaaga
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17545  157869 260 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=32384.000000
s ce10.chrX             3159352 71 + 17718866 GAAAA----GAGAGGCT--ATGCGAAAAATATTT---GGTCTTTGGTTTCGAAAAGCAAACAC---TCGAATAACCGGTTGTT
s cb4.chrX              8216889 80 + 21540570 gagaaaatgggaaaagtgGATGCGAAAAACATTTGTCGGTCTTTGGTTTGAAAATGCAAACAC---GATAATAACCGGTTGCC
i cb4.chrX              C 0 I 16
s caeSp111.Scaffold629   437916 75 - 33334924 gagaa----gaaatagtGGATgcgaaaaacatttct-ggtctttggttttgaaaagcAAATAC---ACGAGGAACCGGTTGTA
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1523835 75 +  4147112 gaaaa----ggaaaaatggatgcGAAAAACATTTCT-GGTCTTTGGTTTCGAAAAGCAAATAC---ACGAAGAACCGGTTGTA
i caePb3.Scfld02_0      C 0 I 350
s caeJap4.Scaffold17545  158129 73 +   227596 gaaag----gagA----GGAcgaggaaaacattttt-ggtctTTGGTTTTGCGA-GCAAATATTGGGAGGAAAACCGGTTCTC
i caeJap4.Scaffold17545 I 260 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-30904.000000
s ce10.chrX             3159423  86 + 17718866 GCCAT------------TTTTT------CGAATGCACTTTTT----------------------------CAATGTTTTA-------GTTGGAAATGTTCAA------------GGAAAAA--------GTTTCTAGATGCTATTCttataaaaaaaac
s cb4.chrX              8216985  86 + 21540570 -----------------------------gcacttttttttg---------------------acaagaGTAACCCTTaa-------ttatcaaaactt---tgtggTTCATATGAAAATA--------GTGTTCGAAttctctttaaa-----aaaac
i cb4.chrX              I 16 I 1
s caeSp111.Scaffold629   437993 140 - 33334924 GTCATGTCTTTCTgcacttttt------cagattctcttttttgaaattactaACAAGTGTTTGGAAGTCTGATACT-------------GCTAGAATCGAGTATCATTGATCTGGAACTAAGGGAGAGGTTATTGAACGCTTTGGGTATCTTTAAAAC
i caeSp111.Scaffold629  I 2 I 115
s caePb3.Scfld02_0      1524260  93 +  4147112 gctat------------ttttt------cacattttcttctt----gcttct--------tGTGCAAATGTGACATCCCA-------CTAGCAAAAATTCAGTGTT-----------------------GCCGTTACATGTTGTggcca-----aaaa-
i caePb3.Scfld02_0      I 350 C 0
s caeJap4.Scaffold17545  158202  64 +   227596 -------TGTTTAGTCCCTTGTGCACGGCATGTGTACTTTTT-------------------------GTCTAATTCTTCAATAAATTGTAGCGAAG---------------------------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-14239.000000
s ce10.chrX             3159509 86 + 17718866 aaa--------------tttaag--------aatttatattttatcaagttaattttttttcaaatt--atttatctaatttaaGATT-CAAAAAAAAACC------TTGACAGCGA
s cb4.chrX              8217072 71 + 21540570 -----------------atgaaa--------aatatataatttgaaaaa---------tttcaagtggAGTTGACTCTATAAACGATGAACAAGATAAATC------TAGA------
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0      1524353 76 +  4147112 aaactgattgcaTTGCCTTGAAGCCTTTTTTACTATa-aagtagaaaaa---------atacaCGTT--GTTGGTTTTATTTCCAcgg-----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  158266 74 +   227596 --------------------------------TTATA-AAGTTAAAGAT-------TTTTTGGAGTT--CCGTGTGCATTTTAAGAAG-GAAAGGGCAACCGTCTAATGAACAGGGA
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   438133 115 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-3723.000000
s ce10.chrX             3159595 23 + 17718866 --AAAAAGACTTCAAAAGTTAAAAA
s cb4.chrX              8217143 23 + 21540570 --ACAATTACGTCAAAAATCTAACA
i cb4.chrX              C 0 I 29
s caeSp111.Scaffold629   438248 16 - 33334924 --aataatgtttcaaaaa-------
i caeSp111.Scaffold629  I 115 C 0
s caePb3.Scfld02_0      1524429  5 +  4147112 -------------aaaaa-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  158340 23 +   227596 TTAAATATGTAGTAAAGAAAAAA--
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-12955.000000
s ce10.chrX             3159618 44 + 17718866 --TGCTGAGGGTGGCATTATTTCTTTAAAGAAAG---------------------------------------ACCCACATA----CAC
s caeSp111.Scaffold629   438264 83 - 33334924 --tgatgactGAGAGTTCCtattattgaagaaaa----aaatcagttgacATCCTATTGGAACCAAATCCTCGTTTCGCAAAATCATGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1524434 26 +  4147112 --tg------------tgtttttatCGGAAA------------------------------------------TTCCGAGAA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  158363 72 +   227596 TGTGTCAATGCAAATATTTTCAAGTGGAATATATTCATGTATatatttaaatacaaaaaaagcgaaa----------aaaaa-------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8217166 29 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=272903.000000
s ce10.chrX             3159662 917 + 17718866  
s cb4.chrX              8217195 909 + 21540570  
i cb4.chrX              I 29 I 374
s caeSp111.Scaffold629   438347 888 - 33334924  
i caeSp111.Scaffold629  C 0 I 32
s caePb3.Scfld02_0      1524460 913 +  4147112  
i caePb3.Scfld02_0      C 0 I 184
s caeJap4.Scaffold17545  158435 890 +   227596  
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=0.000000
s ce10.chrX             3160579 36 + 17718866 GTACTTTTTTTTTCTTCCGGAAAAAATTTAGAAACT
e caePb3.Scfld02_0      1525373 184 +  4147112 I
e caeJap4.Scaffold17545  159325  0 +   227596 C
e cb4.chrX              8218104 374 + 21540570 I
e caeSp111.Scaffold629   439235 32 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=113117.000000
s ce10.chrX             3160615 362 + 17718866 TTTCACTTTTCAGCTTGCCAACAAGCAACTAGAAGCCGAGCGTGAGCAGTTCAAAAAACTCTACGAAGATGCTCATGGACGGTCGATATTTCTCGAACGGAAGTTTACATCACTTCAACTTGATCAAAAACGAGACGAAGCAGAAACTCCAAAAGTAGTTGCAG------CTGT------GGAGGATGACATCAAAATTGCCAAGCTTGAGGTTGGGAATTATAGAAAAGGA-------ATGATCTAAAACTAATT-----TTTTTTAGAATCAAATTATGAATCTTTCGAAACGTTGTGATGATAAAGAAGACGAGTTGTCAGAGCTGTCAAGTATTATAACTCAAATCAAGGGAGAAAATATGGTATTAAAAGAGGTAA---------------TGAAA
s cb4.chrX              8218478 376 + 21540570 tttccatttttagctTGCCAACAAACAGCTCGAAGCAGAAAGAGAGCAGTTCAAGAAACTGTACGAAGACGCTCATGGACGGTCGATCTTTTTGGAGCGCAAGTTTGCGTCGCTTCAACTGGACCAAAAAAGAGATGAAGCAGAAGTTCCAAAACCATCGACTC--ACGTC----------GAAGATGATGCGAAGATTACAAAATTAGAAGT---------TGGAAATAGAAATT-GGCTGGCCAAAAAACGTTA---TTCTTTTCAGGGTCAAATTATGCGCCTGTCTCAACGATGTGATGACAAGGAGAATGAGATATCGGAACTAACATCGGCTATCAGAGCGTTGAAGGAAGAAAAGGAGCAACTTCTGGAGGTAAAACTAGCTGGCATATTCGGT
i cb4.chrX              I 374 I 151
s caeSp111.Scaffold629   439267 367 - 33334924 TGTTATTTTACAGCTTGCCAATAAACAATTGGAGGCTGAGCGTgaacagttcaaaaaactttatgAAGATGCGCATGGTCGTTCGATATTCTTAGAACGAAAGTTTGCATCGCTCCAATTGGATCAAAAACGGGACGAAGAAGAATCCCCAAAGCCGGCGTCTC---ATTCAAC------AGAAGACGACGGGAAACTCACAAAGCTTGAGGTAG-------TTTTAATGGAACTC---ATGGCCATAATCGAACATTTAAACTTTTAGAATCAAATAATGAGTCTTTCTCAACGATGCGAtgacaaagaagaagaaatatccGAGCTGTCGTCAGTCATTAGCACTCtcaaagaagagaatatgaTGCTCAAAGAGGTAA---------------TCAGA
i caeSp111.Scaffold629  I 32 I 60
s caePb3.Scfld02_0      1525557 357 +  4147112 CTTTGATTTTTAGCTCGCCAACAAACAACTGGAAGCAGAACGTGAGCAATTCAAGAAACTTTATGAGGATGCTCATGGTCGttcgatatttttggaaaggaAGTTTGCATCTCTGCAGTTAGATCAGAAAAGAGACGAAGCAGAGACTTCAAAAGTGGcatcttccacttcttc------gGAGGACGAGAAGAAACTAGCAAAACTAGAGGTAC-------TTGTGAAAGA-------TTAACAGGAAAGgaata---aaagtttcagatcCAAATAATGAACCTTTCTCAACGATGTGACGACAAAGAAGAGGAAATATCAGATCTATCGTCTCTCATCACAACTATCAAAGGAGAGAACATGCATCTCAAGGAGGTA---------------------
i caePb3.Scfld02_0      I 184 C 0
s caeJap4.Scaffold17545  159325 357 +   227596 ---------------CGCGAATAAAAATCTTGAAGCGGAGAGAGAACAGTTTAAAAAACTTTATGAAGATGCACACGGACGTTCTATTTATCTGGAACGGAAGTTTGCTTCCATGCAGTTGGATCAAAAGAAGACCGAGGAAGAGGCTCCGAGAGTTGCTTCAA---TGTCGGCGAAGGTGGAGGATGAcgctaaaataattaaattagaGGTATGTGTAT-TTTTAATGTCGTTTTGTATAATATGGAAATAATA------ATTACAGAATCAAATAATGAATCTTTCAAAGCGTTGCGATGATAGGGAGGATGAAATTTCCGAGCTCTCAAGTTTAATTACTGCTCTAAAAGGAGAGAATAGCAATCTCAAAGAAGTAA---------------T----
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-466.000000
s ce10.chrX             3160977 22 + 17718866 AAAATTGCTGGTTAACTTGACC
s caeJap4.Scaffold17545  159682  6 +   227596 ----------------TTTTCT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1525914  0 +  4147112 C
e cb4.chrX              8218854 151 + 21540570 I
e caeSp111.Scaffold629   439634 60 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-6887.000000
s ce10.chrX             3160999 132 + 17718866 TATGTTGTTA--------TTGATGCTTTAAAAAAATTGAATTTTAAAAATGTTTCCGAGTTTGTCAACTATACATCTAAAGTATTTACAAATTTGTTGAAGCTTGAATATTTGTACGTTTTCAATTTTCTAGTTAATTGA
s caePb3.Scfld02_0      1525914  42 +  4147112 -----TGTTA----------AATACTGTGAAAGA--------------------------------------CAATGAAAGTAGTTAGA------------------------------------CTTCTA---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  159688  67 +   227596 ATcattgttatggacctattcataggagaaaaaa--------------------------------------aaacaaaaacaaaaaat-----------------------gtttgtttttgttttt------------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8218854 151 + 21540570 I
e caeSp111.Scaffold629   439634  60 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-28960.000000
s ce10.chrX             3161131 181 + 17718866 TGCCCGAACGCATCAGACTGCAAAGTTTAGGGAATTCTGTAAAGCTAATTTTCTTATTGAATTGTTGAGCATGTAAACACACAGTT-TTAAATAAAAAAT----------------------------GTTGTCAAAACCAGACCCGCCAGAT---------------------GTCAGCTGCTGTAACTTTTTCAGGAACAGT--GTTGTAGAATTTTGTATTCCACAAAAA
s cb4.chrX              8219005 192 + 21540570 tgcttaaac-------------caaccaaaaaactgttataaagcaaaaaatcctattaaac-----------------CACGGCTGTGAGAAACAGAGCGGCTAGACGCAACCAGTGCCGTGGGTAGGTTGCCGGAAATCAAACtgaccgatttttc-------gaaaacaagcTCAGCCA----AAACCTTCTAGGATcactaggccaccaaattttaCACATCCCaaaaa
i cb4.chrX              I 151 I 69
s caePb3.Scfld02_0      1525956  99 +  4147112 ----------------------TGGCCAAGA--------------------------------------------------------TTAGAAAAGGGTC----------------------------GTTGAAGGAAGGCg---taactcatttttcatgttatgAAATGCGAGTCAGTTG------------------CGCTTATCAATTGAGtt-----cacctgaaa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  159755  35 +   227596 -------------------------------------------------tttcttatt---------------------catagatgtcaaacaat--------------------------------gtttaaaaa------------------------------------------------------------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   439634  60 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-4432.000000
s ce10.chrX             3161312 84 + 17718866 TGTAGGAAAAATAAT--TGGCAACATTTTTTTTAGTTAAAAACAATTTGTTAGCTATGTATTATATTTTTGATCCTCATTTGAAGA
s caePb3.Scfld02_0      1526055 22 +  4147112 t--------------------------ttttttggtaa--------------------------------------caTGTCGAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  159790 60 +   227596 tgtcaaaaaacgaatcctatgaataggtccattaaata------------------------ttattttttatt--tatttcaaac
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8219197 69 + 21540570 I
e caeSp111.Scaffold629   439634 60 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-2397.000000
s ce10.chrX             3161396 29 + 17718866 ACTCTTCTTCGAAAACGAATACGATATTT
s cb4.chrX              8219266 24 + 21540570 ACTCTTctt-----aaaaatacgaaattg
i cb4.chrX              I 69 I 30
s caePb3.Scfld02_0      1526077 21 +  4147112 ---ATTGAT-----AATGAAACTAGATTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  159850 11 +   227596 gtttttttt-----tc-------------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   439634 60 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=197569.000000
s ce10.chrX             3161425 556 + 17718866  
s cb4.chrX              8219320 604 + 21540570  
i cb4.chrX              I 30 I 41
s caeSp111.Scaffold629   439694 605 - 33334924  
i caeSp111.Scaffold629  I 60 I 26
s caePb3.Scfld02_0      1526099 608 +  4147112  
i caePb3.Scfld02_0      I 1 I 36
s caeJap4.Scaffold17545  159861 604 +   227596  
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=0.000000
s ce10.chrX             3161981 34 + 17718866 AAAAAGCGAGTTCTCAATTATCCTTACTGTTTTA
e caePb3.Scfld02_0      1526707 36 +  4147112 I
e caeJap4.Scaffold17545  160465  0 +   227596 C
e cb4.chrX              8219924 41 + 21540570 I
e caeSp111.Scaffold629   440299 26 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=130420.000000
s ce10.chrX             3162015 227 + 17718866 CAGAAAAATGCTGGTCACATTGCGACACGAGAAGATGGAACGATCACAAAACCCAAGAAAAATCTCGAGGCACAATCGATCATCAGCACACGACGAGGA---GTCTGCTCGTAGGAGGAGTAGAACATTTTCACAAGATGACA------CTGCAGTGCCAAATGATCCGGATTCTAAAAATGTTTATTATGAGAATCAGCTGTCGAAGAAGGATTATGATATTCAAGAGCTTAGGT
s cb4.chrX              8219965 230 + 21540570 CAGAAAGATGCTCGTTACGTTGCGCCACGAGAAGATGGAGAGATCGCAGAATCCTAGAAAGATTTCGAGGCACAATCGTTCTTCAACATATGAGGAGGATCCGGCTACTCGGAGAAGGAGTAGAACGTACTCACAAGATGACA------CAACAGTTCCGAATGATCCGGATTCGAAGAATGTGTACTATGAGAATCAGTTGACGAAGAAGGATTTTGATATTCAAGAGCTAAGGT
i cb4.chrX              I 41 I 424
s caeSp111.Scaffold629   440325 230 - 33334924 cagaaaaatgttagTAACATTGCGTcatgagaaaatggagagaacACAGAATCCGAGAAAGATTTCAAGACACAACCGTTCATCTACTCACGATGATGATGTGTCGTCACGGCGACGAAGCAGAACATTCTCACAAGATGATG------CTGCTGTCCCAAATGATCCAGATTCTAAGAATGTTTACtatgaaaatcaattgtCGAAGAAAGATTATGACATTCAAGAATTGAGGT
i caeSp111.Scaffold629  I 26 C 0
s caePb3.Scfld02_0      1526743 230 +  4147112 CAGAAAAATGTTAGTGACGCTGCGccatgagaaaatggaaagaacaCAAAACCCACGGAAAATTTCTCGGCACAATCGCTCATCTACTCATGATGAAGATGCAGCAGCTCGGCGGCGCAGCAGAACTTTCTCACAAGACGATA------CTGCAGTTCCGAATGATCCAGACTCCAAAAATGTGTACTACGAGAATCAACTCTCGAAGAAAGACTACGACATTCAAGAGTTGAGGT
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold17545  160465 234 +   227596 TAGAAAAATGTTGGTGACATTGCGGCAtgaaaaaatggagagaaCTCAAAATCCGCGCAAAATATCTCGACACAACCGTTCGTCCACTCATGATGAAGACGCGAATGCTCGCCGTCGGAGCAGAACGTTTTCTCAGGATGACAACTCGGCCGCTGTTCCGAATGATCCAGACTCGAAGAATGTGTACTATGAGAATCAATTGACCAAAAAGGATTATGATATTCAGGAATTGAG--
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=1037.000000
s ce10.chrX             3162242 9 + 17718866 TTGTGATTT
s caePb3.Scfld02_0      1526973 9 +  4147112 TGGTGGGTT
i caePb3.Scfld02_0      C 0 I 936
s caeJap4.Scaffold17545  160699 7 +   227596 --GTGAATT
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8220195 424 + 21540570 I
e caeSp111.Scaffold629   440555 0 - 33334924 C
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-450.000000
s ce10.chrX             3162251 59 + 17718866 ATTTGACGATAATAAAAAAAAACTTAGCTTGCAAGATTATTTCCACTCGAAAAACAAAA
s caeSp111.Scaffold629   440555 36 - 33334924 -----ATGATAGTAGAAACAa-----------gagaatatt-------gaaaagcaaaa
i caeSp111.Scaffold629  C 0 I 192
s caeJap4.Scaffold17545  160706 43 +   227596 -GTATATGATAGGaaaataatgtaaggcg---aaaaatgtc-------gaaaaa-----
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1526982 936 +  4147112 I
e cb4.chrX              8220195 424 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=746.000000
s ce10.chrX             3162310 8 + 17718866 TGCAAAAA
s caeJap4.Scaffold17545  160749 8 +   227596 tgcaaaaa
i caeJap4.Scaffold17545 C 0 I 1429
e caePb3.Scfld02_0      1526982 936 +  4147112 I
e cb4.chrX              8220195 424 + 21540570 I
e caeSp111.Scaffold629   440591 192 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=0.000000
s ce10.chrX             3162318 1406 + 17718866  
e caePb3.Scfld02_0      1526982  936 +  4147112 I
e caeJap4.Scaffold17545  160757 1429 +   227596 I
e cb4.chrX              8220195  424 + 21540570 I
e caeSp111.Scaffold629   440591  192 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=525.000000
s ce10.chrX             3163724 72 + 17718866 AAAAAAAAAACTCTTATTCCACAGTTGTTAACCCCATTTGAAAC--ATCTGAAACTTTGCATTTATTAATCTGA
s caeJap4.Scaffold17545  162186 50 +   227596 aaaataaaatttttcgtttcac--------------tttgtaatttatccgaaaatttggattt----------
i caeJap4.Scaffold17545 I 1429 C 0
e caePb3.Scfld02_0      1526982 936 +  4147112 I
e cb4.chrX              8220195 424 + 21540570 I
e caeSp111.Scaffold629   440591 192 - 33334924 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=179003.000000
s ce10.chrX             3163796 844 + 17718866  
s cb4.chrX              8220619 916 + 21540570  
i cb4.chrX              I 424 C 0
s caeSp111.Scaffold629   440783 808 - 33334924  
i caeSp111.Scaffold629  I 192 C 0
s caePb3.Scfld02_0      1527918 792 +  4147112  
i caePb3.Scfld02_0      I 936 C 0
s caeJap4.Scaffold17545  162236 934 +   227596  
i caeJap4.Scaffold17545 C 0 I 89
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-3276.000000
s ce10.chrX             3164640 28 + 17718866 ---CAATGAAGAAATGATGTGATAATGAAGA
s cb4.chrX              8221535 19 + 21540570 tttttttaaacaaattttg------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   441591 19 - 33334924 TCCCAATCATGAAATTCTA------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1528710 17 +  4147112 gaaatttcacaaaatgc--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  163170 89 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=67042.000000
s ce10.chrX             3164668 125 + 17718866 AATGATTTCAGCAAATAATTCAAGAACAAGACGATGAACTGGAGCTCGTCGGAAATTCGGTGCGAACGTTGAGAGGAATGAGTTCGATGATAGGCGACGAATTGGATCAGCAATCTACGTAAGTT
s cb4.chrX              8221554 124 + 21540570 -gtttttccagCAAATAATTCAAGAGCAAGATGAGGAGCTGGAGTTGGTGGGAAATTCAGTGAGGACGTTGCGAGGGATGAGTTCGATGATTGGAGATGAGTTGGATCAGCAATCAGTgtgagtt
i cb4.chrX              C 0 I 539
s caeSp111.Scaffold629   441610 120 - 33334924 ---TTTTGCAGCAAATAATCCAAGAACAAGATGAGGAGTTGGAACTAGTTGGAAATTCTGTGCGAACGTTGCGAGGAATGAGTTCAATGATTGGTGATGAACTGGATCAGCAGTCAATGTAAG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1528727 121 +  4147112 ---ATTTACAGCAAATAATAAACGAACAAGATGAAGAGCTAGAAATGGTGGGGAATTCGGTGAGGACGTTACGAGGAATGAGTTCAATGATTGGAGATGAGCTCGACCAACAGTCCATGTAAGT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  163259 122 +   227596 aatttttgtagcaaattctCCAAGATCAAGATGAAGAGCTGGAATTGGTTGGACAGTCGGTGCGGACGTTACGAGGAATGAGTACGATGATTGGAGACGAGCTGGAGAGTCAGTCAACGTAt---
i caeJap4.Scaffold17545 I 89 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-10407.000000
s ce10.chrX             3164793  27 + 17718866 GACC--------AGCTTATTTCAAC-----------TTAGA---------------------------------------------------------AATAT
s caeSp111.Scaffold629   441730  27 - 33334924 ------------AAATTACATCGAAAATG-------TTCAA---------------------------------------------------------GAAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1528848 103 +  4147112 GACTGGAACGTTAAATAATGTCAAAACCGGAGTGGATtcaacgcaaaaaaaaaacggtgcCATTACGCAACCAAGCTCATCAACAGATGCTTTTGCCGGAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  163381  25 +   227596 ----gagttatttatttat-----------------ttctg---------------------------------------------------------ggaat
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8221678 539 + 21540570 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-1303.000000
s ce10.chrX             3164820 10 + 17718866 TAAAATTTTG
s cb4.chrX              8222217  3 + 21540570 TAA-------
i cb4.chrX              I 539 C 0
s caeSp111.Scaffold629   441757  3 - 33334924 TAA-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1528951 10 +  4147112 TGATATTTGA
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17545  163406 10 +   227596 tgaAATCCTG
i caeJap4.Scaffold17545 C 0 I 1028
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=56064.000000
s ce10.chrX             3164830 109 + 17718866 CGATTT--------------------------------------------------------------------------------------------------------CAGAATGCTAGACGATTTAGGACAAGAAATGGAGTACTCGGAAACTCGACTGGACACTGCTATGAAGAAAATGGCAAAGCTGACGCACCTGGAGGATGGTATG
s cb4.chrX              8222220 117 + 21540570 CGTTTT------------------------------------------------------------------------------------------------CCGTGTTTCAGCATGCTAGATGACCTTGGACAAGAGATGGAATACGCCGAGACAAAGCTGGACACTGCTATGAAGAAAATGGCAAAGCTGACTCACCTTGAAGACGGTAAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   441760 109 - 33334924 CAATTT--------------------------------------------------------------------------------------------------------TAGAATGCTTGATGATCTCGGACAAGAGATGGAGTATGCTGAGACTCGGTTAGACACGGCTATGAAGAAAATGGCAAAACTGACTCACTTGGAAGATGGTAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1528995 213 +  4147112 CAATTTACTGTccgctctttttttcacaatgtcctttttagaaaaaaccgTTCAGAATCCTCGTAAAAGCTTAGGACATGTATTGAGTTCAAATCAACATATCTGTTTTACAGAATGTTGGATGATCTAGGGCAAGAGATGGAGTATGCTGAGACACGGTTAGACACAGCAATGAAGAAAATGGCCAAGCTGACTCACCTGGAAGATGGTAAG
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17545  164444 109 +   227596 TGATTT--------------------------------------------------------------------------------------------------------CAGAATGCTAGACGATCTCGGAGATGAAATGGAATATGCGGAGACGCGACTCGACACGGCTATGAAGAAAATTGCAAAGCTGGCTCACTTGGAAGATGGTATG
i caeJap4.Scaffold17545 I 1028 I 66
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-5967.000000
s ce10.chrX             3164939 51 + 17718866 T------TGCTGGCCCGTAGAATG-----TAAACGATTTTGTTTATGTTAGCACCGGAAGCT
s cb4.chrX              8222337 50 + 21540570 G------GGgtgttttttcaaacatcggcaaaacttttttgcttcCGTTATTGC------CT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   441869 37 - 33334924 GCTTTTATATTGATTCTCGAAACA-------------------TTCAACATAGC------tt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1529208 41 +  4147112 GCTTT--GATTGATTCCTAGGAAA-------------------CACAATATTGCGAAGAGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  164553 66 +   227596 I
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=-11710.000000
s ce10.chrX             3164990 45 + 17718866 A---GGAAGCAAAGTGTATCATCGAACACATAGCGCCTCCTCGTTT--TC
s cb4.chrX              8222387 46 + 21540570 AGTTGGATATTGCATCCTT--TCGAACAAAAAACGTTTCGTTTCTTGC--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   441906 33 - 33334924 a--tcgaagaaaa-----------aactgaaaacactttttatATT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1529249 33 +  4147112 A--TGGATGTAGC-----------AACATTCAGTCTTCTTGCCCTT----
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17545  164619 31 +   227596 ---AGGAGGATGTATGT-------GAaacaatacatttttt---------
i caeJap4.Scaffold17545 I 66 C 0
e caeRem4.Crem_Contig0   333460 10785 -  4500979 I

a score=3395.000000
s ce10.chrX             3165035 42 + 17718866 AATCAGAAAACATCCAATACTTTCACAAGATGCAGCGTTTCC
s cb4.chrX              8222433 40 + 21540570 --GGAAAAGCAGCATTCTCGGCTTTTAACATGCAACGATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   344245 42 -  4500979 agtcagagagtgcgtcatAAACTCTAAAAATGCAACGTTTCT
i caeRem4.Crem_Contig0  I 10785 C 0
s caeSp111.Scaffold629   441939 30 - 33334924 --GTGAAGAAAGCC----------ATAGCATGCAACGTTTCC
i caeSp111.Scaffold629  C 0 I 44
s caePb3.Scfld02_0      1529290 33 +  4147112 --GCTAAGAAAGCCTAG-------AAAACATGCAGCGTCTCC
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17545  164650 40 +   227596 --gttatGAAAATGTCACAGCCACATGCGATGCTACGATTGT
i caeJap4.Scaffold17545 C 0 C 0

a score=-11509.000000
s ce10.chrX             3165077 44 + 17718866 AGCAGGAAGCTACTTTGAAACTTTC---------------ACCAACTT-----CTTTCTATTCT
s cb4.chrX              8222473 37 + 21540570 ------------ATCCTGTATTGCCAG-------------TTGAGCCTATTCTCATACCATT--
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   344287 38 -  4500979 ------------CTTTCGAAGCTCCCA-------------ATCCACCTATTC-CTTACTATTCC
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0      1529323 46 +  4147112 ------------CTTTGCAACTTCCTACTAGTAA----TTCTCAGCCTAGT--TGCCCTGTTTC
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17545  164690 43 +   227596 --------------CGCAAAGTTCCCACAATTCAACGTTTATGAACCA-----TATTCCACC--
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   441969 44 - 33334924 I

a score=69393.000000
s ce10.chrX             3165121 1169 + 17718866  
s cb4.chrX              8222517  923 + 21540570  
i cb4.chrX              I 7 I 16
s caeRem4.Crem_Contig0   344334  912 -  4500979  
i caeRem4.Crem_Contig0  I 9 I 8
s caeSp111.Scaffold629   442013  886 - 33334924  
i caeSp111.Scaffold629  I 44 C 0
s caePb3.Scfld02_0      1529382 1383 +  4147112  
i caePb3.Scfld02_0      I 13 I 42
s caeJap4.Scaffold17545  164733  918 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=119.000000
s ce10.chrX             3166290 5 + 17718866 AAAAT
s caeJap4.Scaffold17545  165651 5 +   227596 tagat
i caeJap4.Scaffold17545 C 0 I 762
e caePb3.Scfld02_0      1530765 42 +  4147112 I
e cb4.chrX              8223440 16 + 21540570 I
e caeSp111.Scaffold629   442899 0 - 33334924 C
e caeRem4.Crem_Contig0   345246 8 -  4500979 I

a score=-7220.000000
s ce10.chrX             3166295 39 + 17718866 AACTTTGTTATAATTTTGTGATAATAGTTTTTCAAAAAA--------
s cb4.chrX              8223456 18 + 21540570 --------------------AAGCTAAATCTAGTTG---------GT
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   345254 27 -  4500979 --------------------Aagatcttttttcttgaaagaaaaaat
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   442899 26 - 33334924 ---ttt-------tttcacgaaaattttttcacgaa-----------
i caeSp111.Scaffold629  C 0 I 13
e caePb3.Scfld02_0      1530765 42 +  4147112 I
e caeJap4.Scaffold17545  165656 762 +   227596 I

a score=407427.000000
s ce10.chrX             3166334 566 + 17718866  
s cb4.chrX              8223474 522 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   345281 572 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   442938 567 - 33334924  
i caeSp111.Scaffold629  I 13 I 32
s caePb3.Scfld02_0      1530807 572 +  4147112  
i caePb3.Scfld02_0      I 42 I 9
s caeJap4.Scaffold17545  166418 595 +   227596  
i caeJap4.Scaffold17545 I 762 C 0

a score=-7841.000000
s ce10.chrX             3166900  9 + 17718866 TG----------CGATGTA-------
s cb4.chrX              8223996  9 + 21540570 TA----------AAGTGGA-------
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   345853 11 -  4500979 TAT--------TTATTGCA-------
i caeRem4.Crem_Contig0  C 0 I 13
s caePb3.Scfld02_0      1531388  6 +  4147112 -------------GTCGAA-------
i caePb3.Scfld02_0      I 9 I 3
s caeJap4.Scaffold17545  167013 24 +   227596 --TCAATACTTTCGTAGAAGaatggg
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   443505 32 - 33334924 I

a score=-3713.000000
s ce10.chrX             3166909 25 + 17718866 ----CATCTAATTTGTTCACATCTACATT
s caeRem4.Crem_Contig0   345877 18 -  4500979 ----Attcaaa-ctttgagaatt------
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0      1531397 18 +  4147112 ----CTTCTAA-TTGTTCCTGTT------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545  167037 21 +   227596 gaaaaaattaa-ttcttAAATT-------
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8224005 27 + 21540570 I
e caeSp111.Scaffold629   443505 32 - 33334924 I

a score=910.000000
s ce10.chrX             3166934 1 + 17718866 T
s caeRem4.Crem_Contig0   345895 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   443537 1 - 33334924 T
i caeSp111.Scaffold629  I 32 C 0
s caePb3.Scfld02_0      1531415 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  167058 1 +   227596 T
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8224005 27 + 21540570 I

a score=187423.000000
s ce10.chrX             3166935 289 + 17718866 AGGTACGAGTTTGTGAGCACATTGATACAACTACGAATCGGCCATTGTTTGCCTCGGAACAGTGTCTTGGCGAGGGGCATCATCTGGGCACACTTACCAAAGAAATATGCTCACCGAGCAAACAACAAATTTTAGAGCAGGTTTGCTAATACAAAATATG------TAGT-TTC--ATGTT----TTCTCATATCAGATCGTTGAAAAAGTGGGATCAATTGGAGCAAAGTCGGTGTTCGTAGCAAGCGACAAAGATCATATGATAGATGAAATAAACGAGGCTTTGAAGCCATATGAGGTA
s cb4.chrX              8224032 293 + 21540570 AGGTCAGAGTTTGTGATCACATTGACTTGGAGAAAAATCGACCTCTTTTTGCTTCTGAGCAGTGTCTAGGAGAAGGACATCATCAAGGACAGCTCACCATGGAGATGTGTATTCCAAACAAACAACAAATCGTGGACATggtattt---ttcagcaaataaaTCGCTAGT-TTC-GATGAA----ATGTTGTTTCAGATCGTTGAAAAGGTGGGCTCAATAGGCGCCAAGTCAGTATTCGTAGCCAGCGACAAAGATCATATGATTGATGAAATCAATGAGGCCCTAAAGCCGTATGAGGTG
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   345896 289 -  4500979 AGGTGCGAGTATGTGAACACATTGACGTCGaaaaaaaTCGCCCACTATTTGCTTCTGAACAGTGTCTTGGGGAAGGTCATCATCTGGGAAAACTCACAAAGGAGATGTGCATCCCCAACAAACAACAGATTGTGGATCAGGTACAT---TATATCTGTTAA-----TAGTACTT-AAAGAC----CAGCAAGTTCAGATTGTGGAGAAAGTGGGATCGATAGGAGCAAAGTCGGTGTTTGTGGCCAGTGATAAAGACCACATGATAGATGAAATCAATGAAGCACTGAAGCCATATGAGGTA
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold629   443538 290 - 33334924 AGGTTCGTGTGTGCGATCACATTGACACAGAAAAGAATCGACCGTTGTTTGCATCTGAACAGTGTCTTGGCGAAGGCCATCACTTAGGACAATTGACAAAAGAAATGTGTAATCCAAGTAAGCAGCAGATTTTGGAGCAAGTTCGT-AGTACATT----------CTTAT-TTCATATCATACggatttttattcagataGTTGAAAAAGTGGGGTCGATCGGTGCAAAGTCTGTGTTCGTCGCTAGTGACAAAGATCACATGATTGACGAGATCAACGAGGCTCTGAAACCATACGAGGta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1531416 291 +  4147112 AGGTGCGTGTCTGTGAACACATCGACACTGAGAAAAATCGACCACTGTTCGCTTCTGAACAGTGTCTTGGAGAAGGTCATCATCTCGGAAAGATCACAAAGAGCATTTGTATTCCCACCAAAGAACAAATTTTAGAGCAGGTCTGT-ACTCTAATGTTTGA---ACTCAC-ttt-catcat-----tcttttttcagattgtggAGAAAGTAGGATCAATCGGAGCCAAGTCGGTCTTTGTTGCCAGCGATAAAGATCACATGATCGACGAGATTAATGAGGCCTTAAGACCTTATGAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  167059 288 +   227596 AGGCGCGAGTCTGCGAGCACATCGACTCTGAGAGAAACAAGCCGTTGTTTGCCTCCGAGCAGTGTTTAGGAGAAGGCCATCATCTAGGAAAACTGACTGCAGAAATGTGCCTGCCGACAAAACAGCAGATTTTAGATCAAGTGAGG--ATGCACAATTGAAAACTatatc-ttt-----------ttttcaattaagaTTGTTGAACAAGTGGGATTAATTGGCGCCAAGTCTGTTTTCGTAGCAAGCGACAAAGACCACATGATTGACGAAATCAATGAGGCACTGATGCCATACGAGGTA
i caeJap4.Scaffold17545 C 0 C 0

a score=-12976.000000
s ce10.chrX             3167224 51 + 17718866 ATTTTTTTAAAACTGTTTTATTTACTTTTTATTAAGTCGTAGTGCAATTTG-------
s cb4.chrX              8224325 35 + 21540570 -------CGACTTCCTCTTGTTTGCAGCCAAACAAATAATCG----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   443828 30 - 33334924 ---------------------tttcaactaataaaatggtTCTTGAAACAG-------
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_0      1531707 30 +  4147112 ---------------------TTATTATTAGTTCTGTGGACTTTGAAGTGA-------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17545  167347 44 +   227596 --------------GGAAAGCTTGAGTTTATACGAGGAGGTATGAAATATGAAAACTG
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   346185 34 -  4500979 I

a score=138388.000000
s ce10.chrX             3167275 220 + 17718866 AGTT--CATTATAGATCGAAGCTCATCGTCAAGAACCTGATGACATGTACACATCACTTGCCATCATGGGAAGGGCTGACTTGTTTGTTGGAAATTGCGTCTCCACATTTTCACATATTGTAAAACGAGAACGAGATCATGCTGGACAATCTCCAAGACCTTCTGCATTTTTTGGAATCCGGGCGGTCAAAAGACATATCGATTTGTGATCTA-------ATATTTTCT
s cb4.chrX              8224360 224 + 21540570 -----ACGTTTCAGATCGAGGCTCATAGACAAGAAGTTGATGACATGTACACATCGCTCGCTATCATGGGACGTTCTGATTTGTTCATTGGCAACTGTGTGTCCACATTTTCGCATATCGTGAAACGGGAAAGAGATCACACTGGACAGTCGCCACGACCATCCGCATTTTTTGGAGTCCGATCCGCCAGGAGACATATTGATTTATagttttttaataaaaacttCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   346219 222 -  4500979 aattcatttttcagattgaagcTCACAGACAAGAACTAGACGACATGTACACTTCACTTGCGATAATGGGACGAGCGGATTTGTTTATTGGCAACTGTGTTTCTACATTTTCACACATTGTCAAGCGAGAACGTGATCACACTGGACAGACCCCCAGACCATCAGCATTCTTTGGAGTCCATGCAGCTAAAAGAAATATAGAATTGTAGTTTT-------ATGTTTatt
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold629   443870 208 - 33334924 ------------AGATTGAAGCATACCGTCAAGATCCGGATGACATGTATACGTCACTTGCCATAATGGGAAGAGCTGATTTGTTCATTGGAAATTGTGTTTCGACGTTTTCACACATTGttaagagagaaagagattaCACTGGACACAGTTCAAGACCATCGGCATTTTTTGGCGTTCATAGTGCAAAAAGACATATAGAACTGTGA---------ACATTCATTat
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0      1531746 220 +  4147112 ------AATCACAGATTGAGGCTCATCGTCAGGATCCGGATGACATGTATTCATCTCTTGCGATTATGGGAAGAGCTGATCTTTTCATCGGGAACTGtgtttccactttttcccacATTGTGAAACGAGAGAGGGACCACACCGGACCTTCACCAAAACCATCAGCATTTTTCGGAGTATACCCCACAAAAAGGAACATTGAGTTGTGATTTT---ATTCGTTTATTTT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17545  167391 220 +   227596 AGTT--TCATTCAGATCGAAGCTAGACGGCAAACCCCTGACGATCTCTACACATCTTTGGCCATTATGGGACGCGCTGATCGGTTTCTTGGTAACTGCGTCTCGACATTCTCTCATATCGTGAAACGAGAAAGGGACCATTCTAGTCAAATAGCAAAACCTTCCGCtttttttGGAGTTCATGTCGCGAAAAAGCACATTGAATTGTGATCTc-------ttatgtttt
i caeJap4.Scaffold17545 C 0 I 1467

a score=-30436.000000
s ce10.chrX             3167495 112 + 17718866 ACTTAGATCTCCAAAAGT--TTGTGATACACTAACAATTGTAACTTTATTATTACTTAATAAAACAACTAGTCATGTAAGTTAACAACGataaaaacataatta---aaatataatt-----------------------------------------------
s cb4.chrX              8224584 107 + 21540570 -----GATCTC------G--TT--------TTAACAGTTGGAGAACT-TTATTGTTGGAT--------AAATGTTGT--Tttaaca------gagaaaaaatgc---aAGAAAAGTAGAAGGAGCCGGagtaa---aaaaagaataaag-----------aa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   346441  91 -  4500979 -----gatctcaaaaaaa--tc--------aaaatggtTGTGAAA---------TTGGAT--------TAATAATG---AATAACACTG--TGATAaatgattt---gagaaaaacttgtG----------------------ATAAAG-----------AACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   444078  90 - 33334924 -----gatctcaaaaaaagttt-----------ttcattgaataa------------------------aatgaagc--TTCTACATTGATTATAAAATTATTG---GAGACAACTAGG-----------------CAACTAAATGACA-----------ATC-
i caeSp111.Scaffold629  C 0 I 98
s caePb3.Scfld02_0      1531966 113 +  4147112 -----GATCTCAAAACTG--TT-----------ATTGTTGTGATA------------------------AATTAAG--------TATTGGTTttaaaaaacttgagaaagaaaatgggggatatgtgaaataataccaaaagaatgaaatgtaaaaaaggatt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  167611 1467 +   227596 I

a score=-15594.000000
s ce10.chrX             3167607  88 + 17718866 -------attgaataataGTG------------ACCTTA----------------TTGTTAGAATACAG---AACCACTGGGAGTGATTGGAA-ATTCTTTTTGCGCAATGTAATGCTGACTCCAGC-------------------------
s cb4.chrX              8224691  89 + 21540570 -------aCTCAACAACAA--------------TCGCGC----------------TCCATTGAAACTCAGTTGACCATCTCACACTCTTCGGAGTTCCCTTTCACATCCTTTGACGCAGATCTCTG--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   346532  66 -  4500979 -------ATTCGAT-GCAG--------------ACCTGC----------------TCCTCAGAGAA------GACAACGACAC-----------TTTCCTTTTG------TTTATTCTCGTTTCTGC-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1532079 144 +  4147112 attgaaaaatggaaaacaaagaCGACATAGGATTCATGCAATGATTTCACACTCATCGTTTGAAAAAC----GGACACGACGCTCACGTTGTA-CTGGTTCTTGaat---atttctcttctttctgcaAATGCAACAAGCACAGCAGACAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e caeSp111.Scaffold629   444168  98 - 33334924 I

a score=-35587.000000
s ce10.chrX             3167695 220 + 17718866 -------------AATGGTCACAGTAACAAGAAAAACAATAG---------TAAGAAGGATGATTA----------TTAACATCAAGTTTCTGTCGAGGAACTGTGAGAACTC---TGATTTGAGA--AGTGCACGATGCCTGAGGACCTCTTCAGTGTTTCCATAATTGGCTTCCAGTTTATCGAGATCTTC-ATGGCTCACTGGGAGGTG-GTCCTAAATAAACATGTTTTGTTGTTAATTTT-----------------AATAAGAATTTCAA------------
s cb4.chrX              8224780 230 + 21540570 --GTGAACATAGAAGTAAATACC--GAAGAAAACGATGGAGA---GGATCACAAGCAAGCCGATTCC---------CCAAAT--GATGATCTGTTTGATGTAACCGATGGCTCG--TGGTTCGAGA--AGTTGCCGATGTGCCGAGATTTCCAGATGTTCTCCGAGGAGGGAATGCAGTTTGTCGAGGTCATC-GTGAGTGACGGTGAGATT-GTCCTGAAAG----------------AATTTTTGTTGTCATCAattaagaattcaaa------------------
i cb4.chrX              C 0 I 720
s caeRem4.Crem_Contig0   346598 212 -  4500979 GAGTGATC-----------CACCA-GACCAAAACGACCGCAACGTGGGCCA-AAACAAG--AACTCCTAccgaaatccaaaa--aaagcaCTCTTGAAGACCATTTGGCGcttt--tgatttcaga--agaatGCGGTGCTTGATGATTTCCGGATGAGGTCCATGAAGAGCTTCCAGGTAATTGAGGTCCTC-GTTGTTGATTTCGATTAG-TTCctgga------------------aatttt-----------------aaatgaaa------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   444266 218 - 33334924 -------------AACGGATGCgatgatgaaaaa-------------ggaacaaaGGAGAAAGATG----------GCAACG--AATAG--TAGTTCCGGCGAATGACCACTCTGCTTACTCAAGATCATTTTACGACTTTCAGCGAGTATTGGCCATTTTCCATATTGCTTCTCAAGACTATCGATGTCATCAGTGTTTACAGGAGGTACC-TTCTTTAAAA----------GTTAACAGTCTT-----------------AATTGAACATCCAG--CCGATATCAA
i caeSp111.Scaffold629  I 98 C 0
s caePb3.Scfld02_0      1532223 214 +  4147112 -------------AATAACGACGATGACGAAAAATACAGCAATA-ATGCTATAAGCAAGATAGCTG----------TCAATG--AAC----------------GTGATCTTTCT--TTTAGGGAGAAGAGAACGCGACTTTC--TTAATTCTGGGATATCTCCATGTTTGTCTTCGAGCTCGTCAAGATCTTC-GTGCGAAAACGGTTTGTTGTTCTGGAAAG----------AAAGATAGTTTT-----------------CATAGCATTTCCAGAACTTCATTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  167611 1467 +   227596 I

a score=-7800.000000
s ce10.chrX             3167915 254 + 17718866 CTCACCGCCTCTGTGTTAACTGCAAAATGATCGAAC-----GCATTAAGTG--ATTTTCCAAAAACTTTGACGTTATTGAATTTTGCATACGAACCAATTGGGAGCAATAAAGAAACGTGCTGCGAGATGCCCAT---TTGATGAGTTGAATAATGTCCATGAATCATTGTTTGATAAGCCT--------GAGACGATTTTTTTTTTGAAT-TCCAATATTTTTAAAG------CCAGTCA------------CATACTTCTGCGACTGCTGCGACAAC----ACTATAATCACC
s caeRem4.Crem_Contig0   346810 238 -  4500979 ---------tagATATTGGCTTGAAAATGATTACCGAATCTTGGTTGATAGTTCGCATCTTTGGAAGTTCAGTC-----------GCCTTAGGATTCATAGGAATTTTCACAAAGAGATGCTTGGAATCCACCAT---ATGGAGTGTGCTGTTGTGTCCATAAATGGTGAACTCATGCTCCT--------GTAA-------TCATATCTac-tg------ttttcgaaaaa---tcatttaCGAAAAT-----ATTACTTTCAAATTTGAAGCAACAACTACGAATCCGTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   444484 264 - 33334924 CTCACCATTCCTACATAGATCGGAAAATGATCGTAA-----TCGTGCAGAG--CGTGTCCATAGACGGTGACATTTCCAAAACGAGCCCACGAAGAATAAGGAAGACGCAAAGCAACATGTCGAGAAGCGTCCATTGCATGAGTTTC---CATCTTTCCATCGATGAAAGTGGTATAGTTCTATAATAGAGAAG-------TTTTTTAAACGTGA---ATTTATCAAT------CCAGGCAGAGAAATGATCActtacttcaaaaaaagaagcaacgAC----GGTCCATTCAC-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1532437 252 +  4147112 CTTACCACGTTGTTAATGATGCTGTAGTGAGTGAAG-----TTGCTAGTCG--CATGACCATAGACCTTCACCGGACCAAATTGAGCATAGGAGGTGTTTGGAAGGCGCAAAACAACATGCTTACTGACATCCAT---ATAGTGTTCAGAAACAGTTCCATTGATCATAGTTgtgtatttct--------gaaa-------tttttcaaac---------ttttcaataacTGCTCAGGCATGAGATT-----TTTACCTCAACGTTGGCAACAACCAC----ACTGTATTCTCC
i caePb3.Scfld02_0      C 0 I 15032
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8225010 720 + 21540570 I

a score=1966.000000
s ce10.chrX             3168169 24 + 17718866 AACATATTCTCTAACAAAAACTTT
s caeRem4.Crem_Contig0   347048 24 -  4500979 GTCAAAATTTCTGACAAATAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   444748 22 - 33334924 --CATAGTCTCGAATGAAAACTTT
i caeSp111.Scaffold629  C 0 I 7110
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8225010 720 + 21540570 I

a score=3596.000000
s ce10.chrX             3168193 321 + 17718866 AGTAGGAGCCATCACAAC--CTCGACCGGACAATTTTCGGGGCTGGTAACCGTGCAAGTAGTATTCCGAGATATTTGGCATTCGTAGTAATTTTTCTG--AAACTTTGAATGACTACAGTTTGATGTTTTATCACAAACCAGAAAACGACAGGAATCCATTGAAAATAATTTGCCATCGTACAACACCGCGTGTGTAGAAATGTTTCGATATTTGAACACCGTCCCGAGTGATGAGAAATGACCAATTGAGGCGACCTTTAATATATTGATTGTCAGGGATTCCACTTGCAAGAAAATGTGACACTTGATACCCACAGATGTCTT
s caeRem4.Crem_Contig0   347072 312 -  4500979 GTTCGGAGTTAGTGCAGCAACTTGGTCG--CATTTCTCATAGTTGGAAACTGAGCAGGTGTTGTTTCTCGAAACCGTACACTCTTGGAATGTTCCCTGAAAAACATTaatataagaaaaattgtCGTATTATCACTCACGTAATCAAGACAGGAGTCAACCGATATTATCTCATTGCCAACTGCCACAGCCCATTCCGAAATGTTTGTGTACTTGTATATTGTTCCGAGCTCCGTGAAATTTCCGACGGAGAGAATCTAAAATCTTACGATAACCTGTATTACTAT-----------TATTACATTTAACAATTACAGATTTCCT
i caeRem4.Crem_Contig0  C 0 I 3174
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8225010 720 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I

a score=0.000000
s ce10.chrX             3168514 619 + 17718866  
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8225010 720 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I
e caeRem4.Crem_Contig0   347384 3174 -  4500979 I

a score=3690.000000
s ce10.chrX             3169133 586 + 17718866  
s cb4.chrX              8225730 598 + 21540570  
i cb4.chrX              I 720 I 6512
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I
e caeRem4.Crem_Contig0   347384 3174 -  4500979 I

a score=0.000000
s ce10.chrX             3169719 1674 + 17718866  
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8226328 6512 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I
e caeRem4.Crem_Contig0   347384 3174 -  4500979 I

a score=891.000000
s ce10.chrX             3171393 25 + 17718866 AATTTGAAAATCAACAAAAGTATGA
s caeRem4.Crem_Contig0   350558 25 -  4500979 AGTTTTGCAATCAGcacaagtttca
i caeRem4.Crem_Contig0  I 3174 C 0
e caePb3.Scfld02_0      1532689 15032 +  4147112 I
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8226328 6512 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I

a score=91.000000
s ce10.chrX             3171418 1 + 17718866 A
s caePb3.Scfld02_0      1547721 1 +  4147112 a
i caePb3.Scfld02_0      I 15032 C 0
e caeJap4.Scaffold17545  167611 1467 +   227596 I
e cb4.chrX              8226328 6512 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I
e caeRem4.Crem_Contig0   350583 0 -  4500979 C

a score=1516.000000
s ce10.chrX             3171419 7 + 17718866 AATTTCA
s caeRem4.Crem_Contig0   350583 7 -  4500979 aaattga
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0      1547722 7 +  4147112 aaattag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  169078 7 +   227596 aatttta
i caeJap4.Scaffold17545 I 1467 C 0
e cb4.chrX              8226328 6512 + 21540570 I
e caeSp111.Scaffold629   444770 7110 - 33334924 I

a score=-440.000000
s ce10.chrX             3171426 64 + 17718866 TTTAT-----TCATTGTAGAACAAATT----------ACAAAGTAGGATTGCGGTCTAACACCTGC------AGTGAA----------GAAAAAA---------------
s caeRem4.Crem_Contig0   350600 82 -  4500979 TTTAGAATCAtcagtttattttatttgaagtAGTGGAACAAAGTGTGAATGCGGTCTAACACCTTC------AATGAGTTAGAC----TAAA------------------
i caeRem4.Crem_Contig0  I 10 I 10
s caeSp111.Scaffold629   451880 84 - 33334924 tttat-----tcattgaattcaagTTTAATCAATAGAACCATAAATGATTGCGGTCTAACACCTGG------GGTGAATCAGTTTTTGCGAGAAt---------------
i caeSp111.Scaffold629  I 7110 I 2
s caePb3.Scfld02_0      1547729 75 +  4147112 tttat-----TCATTACAGttcatttt--ccgagaaaa--aaagatgattg-gGTCTAACACCAGG------AGTaggttgaat----aaaaaaa---------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545  169085 97 +   227596 tttat-----t--tttcaataaaaaag--acAAGAAGACAAAGTGTGATTTCGATCAAACTCCTGGAAAAATAAGAAGTTGCAT----TGAAAATGGAAGACGGAAAGGA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8226328 6512 + 21540570 I

a score=133345.000000
s ce10.chrX             3171490 245 + 17718866 CAAAGCACAAATG----AGTAAAAACCACTGGAATGAAAAAGC----AAAGAAAAAGTCACAGCCG--GTAAAGCAGTTATACAAT---AATATTAAGA-------ATATCTTGACTTCATTGCAGTC--AAATGAATCGTGTTTATCATGTTGGTTTAGTCAGTTTCTTGTCCCGATTTTAAAGCAAAA--TATA--AGTTGACATGTACTATTGAGGCATCGTATTTAGTTGATTTTGAGATCCACCAGGTCTCCTGAAATGGAATTAT-
s cb4.chrX              8232840 234 + 21540570 -----CAAAATacgtttggaaaaaa----aggaatggagaagcgaaaaaag-aaacgtcACAGCCG--GTAAAGCAG-TATACAATTAAAGATAGAAAAGcaggaaaaagagagattttgaaaagaat--------------tgtAATCAGTTGGTTTAGTCAGTGT----TCCCGAGTTTAAAGCAAAAATTA-ATGTGTTGACATGTACTATTGAGGCATCgtattcagttgattttgagatCCAATAGATCGCCTG-----AAATtat-
i cb4.chrX              I 6512 C 0
s caeRem4.Crem_Contig0   350692 241 -  4500979 -----caaagaaa----agaaaaaa-cacaggaatggagaagc----aaag-aaaagTCACAGCCG--GTAAAGCAGTTATACAATTACAATAATAGCAGACAGAAGGAAATAATGTTCAATGTGAAT--TAATTAAA---ATGTATCGTGTTGGTTTAGTCAGTTT---GTCCCGATTTTAAAGCAAAA--TA-A--TGTTGACATGTACTATTGAGGCATCGTATTTAGTTGATTTTGAGATCCACCAGGTCACCTGGaagaaaactat-
i caeRem4.Crem_Contig0  I 10 I 22
s caeSp111.Scaffold629   451966 233 - 33334924 aaaagcaaaagaaga--aaaaggaa-cacaggaatgaaaaagc----aaag-aaaagTCACAGCCG--GTAAAGCAGGTTTACata---atttatgaaa-------aaataaagagtTCATTGTGAAT--GAGTTAAC---GTGTATCGTGTTGGTTTAGTCGTTTT---GTCCCGATTTTAAAGCAAAT--TA-A--TGTTGACATGTACTATTGAGGCATCGTATTCAGTTGATTTTGAGATCCACCAGTTCCCCTG-----AAAACGT-
i caeSp111.Scaffold629  I 2 I 3
s caePb3.Scfld02_0      1547806 230 +  4147112 aaaagcagaaggttc--agcaaaaa-cacaggaatg-aaaagc----aaag-aaaagtCACAGCCG--GTAAAGCGAGTATACAAT---AATTAAAACAGC-----AAAAGAAGAGTTCATTGTGATT--TAGTTAAC-------AACTTGTTGGTTTAGTCAGTTT---GTCCCGATTTTAAAGCAAAT--TA-A--TGTTGACATGTACTATTGAGGCATCGtattcagttgattttgagaTCCACCAGGTCGCCTT-----AAAGAAT-
i caePb3.Scfld02_0      I 2 I 3
s caeJap4.Scaffold17545  169182 245 +   227596 -----CAGAGC------ACAGGAAA-CACAGGAATGgaaaagc----gaag-aaaagtcacagccgaaaaaaagcagaataatattaaaaagaaaggaagaaaagaaaagaaaagattcATCGTGGATAATAATACAA---ATATAAACGTTGGATTTAGTCAGTTT---GTCCCGGAGTTaaagcaaat--tttt--tgttgacatGTACTAATGAGGCATCGTATTCAGTTGATTTTGAGATCCACCAGATCGCCTGGAAAAAGAACAGA
i caeJap4.Scaffold17545 C 0 C 0

a score=-13484.000000
s ce10.chrX             3171735 61 + 17718866 GTGTTTAGGACAAGTATCTAATGTAATATGTAATATGTCTTATATGTTACAGTATTAAAAT---
s cb4.chrX              8233074 44 + 21540570 --attt-----caataaaaaatacagGAGGAAGTAATT----------AAAGTGATTAGGA---
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629   452202 33 - 33334924 -------------GAGTAGAACACGGAAGTTA--AATT-------------TCGGTGAGAA---
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1548039 35 +  4147112 -------------GtacggaaaaaagaagtgattaTCT-------------GAGATTAGGT---
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545  169427 29 +   227596 ----------------------ACGGTTAGGAGAAGTT-------------TCGACAAGAAGAA
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   350933 22 -  4500979 I

a score=194684.000000
s ce10.chrX             3171796 393 + 17718866  
s cb4.chrX              8233119 379 + 21540570  
i cb4.chrX              I 1 I 5
s caeRem4.Crem_Contig0   350955 386 -  4500979  
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold629   452235 377 - 33334924  
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1548074 392 +  4147112  
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17545  169456 535 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-10195.000000
s ce10.chrX             3172189 34 + 17718866 AGATACC--GTTTCACTATAAGT------TGATTTCTTTGAC
s cb4.chrX              8233503 24 + 21540570 aaataat--ttttgacaCTCG----------------AAAAC
i cb4.chrX              I 5 I 7
s caeRem4.Crem_Contig0   351341 27 -  4500979 ---------tttcaacatttagT------GAATAGATAAAAC
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   452625 13 - 33334924 -----------------------------aaataaaaagaaa
i caeSp111.Scaffold629  I 13 I 7
s caeJap4.Scaffold17545  169991 40 +   227596 -GTTCCCAATTTTTACCATTATTTtccacaaattaaaaaaa-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1548466 34 +  4147112 I

a score=43736.000000
s ce10.chrX             3172223 108 + 17718866 ACTACTGTAAC--ACATATTAAATTAAAC----------TTTTCCTAAA-GCTTTGG--AACATTCTCTCACGCAGACAAGGTTGAGAC-----AAAGTTGAC------------TCTAACAAGAATTGGACA--ATT----GTTT----------
s cb4.chrX              8233534 110 + 21540570 ACTATTGGGACATATATATTAAATGAAAC--GTTGTTGTTTTCCCTAAATGC-TCAGATAACATTCT------CAGACAATGTTGGGAC-----AAAATTGAC------------TC------GATTCGGACAGGTTT----GTTC----------
i cb4.chrX              I 7 I 2
s caeRem4.Crem_Contig0   351375 102 -  4500979 ACTATTGGAAC--ACATAGTAAATTGAAC---------TTTTCCCTAAA-GC-TCGA--AACATTCT--CACGCAGACAATGTTGGGAC-----GAAATTGAC------------TCTAACAGGAATCGGACA----------TTT----------
i caeRem4.Crem_Contig0  I 7 I 2
s caeSp111.Scaffold629   452645 106 - 33334924 actactGGAAC--ACATATTAAATTAAAC--AT-----GTTTTCCTAAA-GC-TCGA--AACATTCTTTCACGTAGACAATGTTGGGAC-----AAGATTGAC------------TCTAACAGGAATTGGACa----------cat----------
i caeSp111.Scaffold629  I 7 I 67
s caePb3.Scfld02_0      1548500 105 +  4147112 actattggaaC--ACATATTAAAAGAAAC---T-----GTTTCCCTAAA-GC-TCGA--AACATTCTCTCACGCAGACAATGTTGGGAC-----AAAATTGAC------------TCTAACAGGAATCggaca----------ttt----------
i caePb3.Scfld02_0      I 34 I 7
s caeJap4.Scaffold17545  170031 144 +   227596 actaatggGTC--ACATagtaatttaaataaat-----atgtatgtatgtac-atac--acAATTCA--CACGGACAAAATTTTCggacacaaaaaaattaacgggATTTCGACATTTTTCAATAATAGGACAATATTTTTGGTTTCCTCATGTTA
i caeJap4.Scaffold17545 C 0 C 0

a score=-15812.000000
s ce10.chrX             3172331 48 + 17718866 ------CAAAAATTT--GAATTTCAAGTATGTATGAAGACG---GAACCTGGCAATATT
s cb4.chrX              8233646 42 + 21540570 ------TAGAGAT---ACAATTTTGGATGGCACTCAAA------TGTTAT--CAGTGTT
i cb4.chrX              I 2 I 4
s caeRem4.Crem_Contig0   351479 42 -  4500979 -----------------CACTTTCGCTTATTATTCCAAATAACTGGTTATAATAATGTC
i caeRem4.Crem_Contig0  I 2 I 4
s caePb3.Scfld02_0      1548612 33 +  4147112 ------tgaaaatttggaattttcactTCGCTTT----------GATTG----------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17545  170175 38 +   227596 CCATCGtttgggttttggatctccttttcatttt----------catt-----------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   452751 67 - 33334924 I

a score=255200.000000
s ce10.chrX             3172379 770 + 17718866  
s cb4.chrX              8233692 867 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   351525 777 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   452818 751 - 33334924  
i caeSp111.Scaffold629  I 67 C 0
s caePb3.Scfld02_0      1548645 746 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  170213 818 +   227596  
i caeJap4.Scaffold17545 C 0 I 797

a score=-4471.000000
s ce10.chrX             3173149 10 + 17718866 TGCTCTTAAA
s cb4.chrX              8234559 10 + 21540570 CATGTTGCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   352302  2 -  4500979 CA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   453569  2 - 33334924 aa--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1549391  2 +  4147112 GA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  171031 797 +   227596 I

a score=-2722.000000
s ce10.chrX             3173159 11 + 17718866 TCA---ACTATAGC
s cb4.chrX              8234569  9 + 21540570 TCA--TACCGT---
i cb4.chrX              C 0 I 200
s caeRem4.Crem_Contig0   352304  5 -  4500979 ------ACTGT---
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   453571  5 - 33334924 ------aatgt---
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1549393  5 +  4147112 ------ACtat---
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17545  171828 11 +   227596 tcaaaaattga---
i caeJap4.Scaffold17545 I 797 C 0

a score=623973.000000
s ce10.chrX             3173170  978 + 17718866  
s cb4.chrX              8234778  884 + 21540570  
i cb4.chrX              I 200 C 0
s caeRem4.Crem_Contig0   352318 1015 -  4500979  
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold629   453580 1003 - 33334924  
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1549403  991 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17545  171839  884 +   227596  
i caeJap4.Scaffold17545 C 0 I 126

a score=-12698.000000
s ce10.chrX             3174148 21 + 17718866 TTTAAGCTCAATCG--CGTC--------------------------------ACA
s cb4.chrX              8235662 26 + 21540570 TTAAAAATCAAGGCTCTATGCTG-----------------------------TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   353333 17 -  4500979 tCTAAAA---------CGTGTGA-----------------------------CCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   454583 19 - 33334924 TTCATGA---------TATCTTC---------------------------ATACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1550394 14 +  4147112 ttcaata---------taTA--------------------------------ACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  172849 47 +   227596 TTTAAAct--------tgtattaaatcttgaggattttccttaaaaaacgacaca
i caeJap4.Scaffold17545 I 126 I 121

a score=617800.000000
s ce10.chrX             3174169 661 + 17718866  
s cb4.chrX              8235688 658 + 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   353350 658 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   454602 658 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1550408 660 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  173017 663 +   227596  
i caeJap4.Scaffold17545 I 121 C 0

a score=-6854.000000
s ce10.chrX             3174830 37 + 17718866 ATTTGCTTTAATGATCAATGGTT----ATTAGG--TTATGCAA
s caeRem4.Crem_Contig0   354011 32 -  4500979 --------aaaaagtttactgttgaactttatt--attttca-
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   455260 29 - 33334924 --------aaaaaataaacaatt----ccAATT--ATATTCTG
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1551068 31 +  4147112 --------aaaaaataaacaata----ttttttaaacattcCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  173680 37 +   227596 ACAAATGATAGAAATAAATACCC----ACTACGAATTATTA--
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8236346 37 + 21540570 I

a score=1916980.000000
s ce10.chrX             3174867 2391 + 17718866  
s cb4.chrX              8236383 2432 + 21540570  
i cb4.chrX              I 37 I 2
s caeRem4.Crem_Contig0   354043 2381 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   455293 2395 - 33334924  
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1551099 2355 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17545  173717 2477 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=0.000000
s ce10.chrX             3177258 3 + 17718866 AAT
e caePb3.Scfld02_0      1553454 3 +  4147112 I
e caeJap4.Scaffold17545  176194 0 +   227596 C
e cb4.chrX              8238815 2 + 21540570 I
e caeSp111.Scaffold629   457688 0 - 33334924 C
e caeRem4.Crem_Contig0   356424 3 -  4500979 I

a score=-10072.000000
s ce10.chrX             3177261 110 + 17718866 CAAGCTTTTGATTAATAAATACATATACCTGTTAAATGTTAAGTTGAAAGTTGGTAGTGACTTCAAGTTTTTTCTTCAATTTGAAAAATCAATATGAAATTGAGATTATC
s cb4.chrX              8238817  37 + 21540570 AAAACTGTCAATAAAT---------------------------------------------------------TTTAGCTTCGAGCAG----------------GTTATC
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0      1553457  27 +  4147112 CTAGTGTTTAaggaat-------------------------------------------------------------aatttgaaaaa----------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545  176194  16 +   227596 -----------TAAAT---------------------------------------------------------ATAGAATATGA--------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   457688   0 - 33334924 C
e caeRem4.Crem_Contig0   356424   3 -  4500979 I

a score=-457.000000
s ce10.chrX             3177371 16 + 17718866 AATAACATACTTTTTA
s caePb3.Scfld02_0      1553484  1 +  4147112 ---------------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  176210 16 +   227596 AATAGTACACATATTC
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8238854  0 + 21540570 C
e caeSp111.Scaffold629   457688  0 - 33334924 C
e caeRem4.Crem_Contig0   356424  3 -  4500979 I

a score=411.000000
s ce10.chrX             3177387 7 + 17718866 ACAAAAA
s caeRem4.Crem_Contig0   356427 7 -  4500979 Acaagaa
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   457688 5 - 33334924 --AATAA
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0      1553485 7 +  4147112 acgaaaa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  176226 4 +   227596 ATGA---
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8238854 0 + 21540570 C

a score=-12853.000000
s ce10.chrX             3177394 134 + 17718866 ACATCAGCTGAAAATTTAAAATCGATTTTTTTTTCAAGATCATTTCGGAGAAAAATAGAAA---CTAAATTCCTCCAATTTTTTACTTATTTTTTAAGCCACTTCGCAAGAAAATGTATATAAAATTCCATAGTTTC
s caeRem4.Crem_Contig0   356434  27 -  4500979 atgtttatttttagttCAAC--------------------------------------AAA---CTGA---------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   457699  24 - 33334924 --ACtgattgaaaactgaaa--------------------------------------ata---ata----------------------------------------------------------------------
i caeSp111.Scaffold629  I 6 I 1
s caeJap4.Scaffold17545  176230  22 +   227596 -------CTGAAAAGTGCAA--------------------------------------AGAATTCTG----------------------------------------------------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1553492   1 +  4147112 I
e cb4.chrX              8238854   0 + 21540570 C

a score=0.000000
s ce10.chrX             3177528 1 + 17718866 A
e caePb3.Scfld02_0      1553492 1 +  4147112 I
e caeJap4.Scaffold17545  176252 0 +   227596 C
e cb4.chrX              8238854 0 + 21540570 C
e caeSp111.Scaffold629   457723 1 - 33334924 I
e caeRem4.Crem_Contig0   356461 1 -  4500979 I

a score=702799.000000
s ce10.chrX             3177529 1052 + 17718866  
s cb4.chrX              8238854 1003 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   356462 1014 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   457724  945 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1553493 1014 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545  176252 1155 +   227596  
i caeJap4.Scaffold17545 C 0 I 210

a score=294106.000000
s ce10.chrX             3178581 801 + 17718866  
s cb4.chrX              8239857 796 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   357476 831 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   458669 778 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1554507 882 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  177617 739 +   227596  
i caeJap4.Scaffold17545 I 210 I 85

a score=3255.000000
s ce10.chrX             3179382  94 + 17718866 AATTGGAAATTTACAACCCAAAT----TGGATAGGTGA---------------------CCTTG----CGCAAACACTGATCAAAA---------------ACTTTTT--ATGAGTCCCAAAAGCTTGTTGGAATTGCAG
s cb4.chrX              8240653  91 + 21540570 ------GAAATGAA------AGTTTCTCGGTTAGGGGC---------ATGCA-------ACCTG-TGACAACGACCtttcttag-----------------attttttaaaaggatCCCAAGAGCTT---AGAAATACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   358307 109 -  4500979 ------AAGTTTACGACACTAATATAACGTGTAGGTGT---------TTGGC-------ACCAGATGCCCAAAAAATATCTCAGGA---GGGCATTGGAAAACTTTT---ATGGATCCCAAGAGCTT---AGAAATGCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   459447 104 - 33334924 AAGTGTGAGTTTACGACATCAATATAGTGCGTAGGTGT---------GTACC-------AATAG---CCTTGAAAACATATCAGAA---GGAcattta--aactttttt-atggATCTCAAGAGGTT-----------AA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1555389 133 +  4147112 AAGTGGGAGTTTACGACAGCAATATAGTGTGTAGGTGTAGTAGTCAAATATCCTTTCAAGATAA---CCTTAGAGATGAATCAAAAGTTGGACATCCA-GAACTTTTTTAATGGATCCCAAGAGCTT---AGGAATGCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  178356  85 +   227596 I

a score=8777.000000
s ce10.chrX             3179476  86 + 17718866 GAACATGACGTAATGGACAA------------------------TGAG--CCGGTGAAAAATGATATTCGGAACGTG--CTCCA------TCTG---------TCTGACTCTAA--CCT--TTGTCG----TCCTGG
s cb4.chrX              8240744  73 + 21540570 AAACATGACGTAATG-----------CAGAAGCTCGTTTCTCGCCGAA--CCGGTGAAAAATGATATTCGGAA-------------------------------------------CCTTATCCTCT----TT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   358416 117 -  4500979 GAACATGACGTAATGGGCAATAAGTCCGAGAGCT----------CGAT--ccggtgaaaaatgatattcgGAACGCAGCCTCCC-AtttttttGCTATTG---CTGTCCTCCGACTCCCAATCTCCTTCTCTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   459551 110 - 33334924 AAGCATGACGTAGAGTCCAATAAGTCTTGAATCT----------CGATCCccggtgaaaaatgatattcgGAACGTGCCCTCCA--TTTTTCTGTCGT-----CTGGACTCTGA--CCCTATTTCCA----AC----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1555522 112 +  4147112 GAACATGACGTAACGGCCAATAAGTCCTAGAGCT----------CGAT--CtggtgaaaaatgatattcggAACgtgccctccatttttttctgtcgttgTCGCCTGCCTCTAA--CTC--TTTCCA----A-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  178441  77 +   227596 GAAAATGACGT---------------TGAGAGTT----------GAAA----GGTGATATTTGATATTCGGAACGCg-cctcga-tttttttttttgc-----cctgtCTCGG------------------------
i caeJap4.Scaffold17545 I 85 I 37

a score=4377.000000
s ce10.chrX             3179562 21 + 17718866 TGGTAGCCGTCTATCTCTGGC
s cb4.chrX              8240817 14 + 21540570 ---TAGGGCTC----TCTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   358533 18 -  4500979 ---TGGCGCTCCATTTCTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   459661 18 - 33334924 ---TCTGGCTCCATCTCTGGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1555634 13 +  4147112 --------CTCCATCTTTGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  178518 37 +   227596 I

a score=143938.000000
s ce10.chrX             3179583 273 + 17718866 GCCGTTCTC---TATCC------CCATATCCTTCTCCCCCAC-ACATTCCTAGTCAAAAAAGGGCACGATAC---GAAACCATTCAGAATGATACATTGGCG----TGTGCACC----------CCGCG---CCAGTGAACCCGGCCGAGCATTAACATTCTCATTTGCAATTGATGAACATCTACTATGCTGATGCGC-------G----CGTCTCCCGTTT------TTCCGCGCT-TCTTTCTGAA------CTCGGCT----CAACTCATTCCACCATAAAAAGAAACGAAAGAACAAGAGCAAAAGATGA-GCTG---GAACCGGAA-GCT
s cb4.chrX              8240831 262 + 21540570 GCCGTtctc---ctttc------t----tttttatctcccGCGACATTCC--------AAAGGGCACGATAC---GAAACAATTCAGAATGATACATTGGCGTGCTTGCGCACACACGACCCCGCCGCG---CCAATGAACCC-TCCGAGCATTAACATTCTCATTTGCAATTGATGAACATCAAGTATGCTGATGCGCTGTCGGAAGGAGCCGCACACTCTCT---CCATTTTTGCT-CTTCTCT-----------------------CTTA-------------------AAAAGAACAAGAGCAAAAGATGAGGCTGAAAAAACCGGAAGGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   358551 277 -  4500979 GCCGTTCTCTATCCTCC------C----CCTCTATCCATTTGAGCATTCCTA---AGAAAAGGGCACGATAC---GAAACAATTCAGAATGATACATTGGCG----TGTGCACC----------CCGCG---CCAATGAACCCGGCCGAGCATTAACATTCTCATTTGCAATTGATGAACATCTACTATGCTGATGCGCCGTCGGGA----CCGCTCCCCTCCCCAACCATTTTTGCC-TCTTTCTGGA------CTCCGCT----TGGCTTATTCT-TGATAGAA----GTGAAAGAACAAGAGCAAAAGATGA-GCTG---GAACCGGAA--GC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   459679 264 - 33334924 gccgttctc---tttttttttcgc----tcgCTATCCGTTTC-ACATTCCAA---AGAAAAGGGAACGATAC---GAAACAATTCAGAATGATACATTGGCG----TGTGCACC----------CCGCG---CCAATGAACCCGGCCGAGCATTAACATTCTCATTTGCAATTGATGAACATCTACTATGCTGATGCGC------GG----CGGCTCcctctt----caatttttgccTTCTCTCTAGA--------------------CTCATTCT-TGGTAGAA-TAAGTGAAAGAACAAGAGCAAAAGATGA-GCTT---GAATCGGAA-GTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1555647 263 +  4147112 GCCGTTCTC---CCATT-----------CCCCTATCCCTTCC-ACATTCCAA---CAAAAAGGGCACGATAC---GAAACAATTCAGAATGATACATTGGCG----TGTGCACC----------CCGCGCCACCAATGAACCCGGCCAAGCATTAACATTCTCATTTGCAATTGATGAACATCTACTATGCTGATGCGCTGTCGGAG----CTGCTCCTCCCT------AGTTTTGTC-TCTTTCTGGA--------------------CTCATTCT-TGATAGAA-GATGTGAAAGAACAAGAGCAAAAGATGA-GCTG---GAACCGGAA-GCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  178555 256 +   227596 GCTGGTAgc---ttctc-----------tctttctcttctCA----------------AAAGGGCACAATacgaagaaacaattttgaatgATGCATTGGCG----TGT-----------------GCG---CCAATGAACCCTGCCCAGCATTAACATTCTCATTTGCAATTGATGAACATCTACTATGCTGATGcg-------------cttctctttttt----cttcctttttt-tcttccaggcCGCCTCCTCCGCTGCCGCGCTTctgttt-ttgaagaa--aaaggaaaaaaaaaaccgaaagaaCAA-GCAA---GAGCCTAGA-ACT
i caeJap4.Scaffold17545 I 37 I 369

a score=1946.000000
s ce10.chrX             3179856 35 + 17718866 GCAATGTGAACCCTTCGTTTTTTTT--TGGC------TGTAAA
s cb4.chrX              8241093 42 + 21540570 GACA-TCGAACTTGTCGTTTTTTCGGGTGGTAGTGGATGTAAA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   358828 31 -  4500979 GCCA-TCGaacttg--gtttttttcagt---------tgtaaa
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   459943 24 - 33334924 ACTA-GCGAACttgatgttttttgt------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1555910 36 +  4147112 GGCG-GCGAACTTAGCGTTTTTTCTGTCTGC------TGTAAA
i caePb3.Scfld02_0      C 0 I 85
e caeJap4.Scaffold17545  178811 369 +   227596 I

a score=-4212.000000
s ce10.chrX             3179891 64 + 17718866 AAATTCGTTTTATTTCGTCATCAAAATCTAGATG---------CTTGAT-------TTTTAAACTTCACTC-------ACTAAAAAA--
s cb4.chrX              8241138 54 + 21540570 -----------------------aaattgaagttttttcgGGATCAAATAGAGCAAGTTGGAACGGCActt------------aagaaa
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   358862 55 -  4500979 -----------------------GAATCTAAATC---------TCATGTCTGGC--GTTGGAACGGCATTTTCCGCGGCATTCAAGAGG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   459967 57 - 33334924 -------ttttatttgtaaAGTTGAATCTAAATC---------TCAAAT-------CTTCGAACGGCACTT-------GCTTCGAGA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1555946 85 +  4147112 I
e caeJap4.Scaffold17545  178811 369 +   227596 I

a score=-3938.000000
s ce10.chrX             3179955 108 + 17718866 TTTCAAAAATTGCTCAGCCGGAGAATGG---GAAG--CAACACT-----------TGAGAAAACGGGAAAACAATCCTATCAAAAAA--------GTGCACTACTTAAACAAAT-TGAGCTGATCTTT--TTTGA
s cb4.chrX              8241192  98 + 21540570 --------attgaaaaaaaaaacagggatAAAAAGTGCAATACTGCGCTCCATCCTCA--------TGATAAAGTACTATGATAAAG-------TGCGAGCGCTCTCAGCGAATCT--------------CGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   358917 105 -  4500979 --------GTTAGCAAGTAAAAAATGAGT---AAGTGTGATACT-----------TAA--------GAAAACAACACtatcaaaaaagcaatttGGCGCACTTATTTAACAAATATTAGAGACAGTTTGACAGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   460024 107 - 33334924 TGATGGatattgaaagaagaaaaaaagat--aaagtAAGATACT-----------TGA--------GAGGGCAAtcatatcaaaaaagcaat-----GAGCTCATTGAGCAAATCTTAGCGGAACGTT--TTTGA
i caeSp111.Scaffold629  C 0 I 94
s caePb3.Scfld02_0      1556031  87 +  4147112 tttaaaaaagtgaagagtGAAAAGGTGA---AAAGTGCAACACT-----------TGA--------GAAAACATCCCTATCAATAGGCCAA------------------------TTTGCCGCAGCTC--TATGa
i caePb3.Scfld02_0      I 85 C 0
e caeJap4.Scaffold17545  178811 369 +   227596 I

a score=-6231.000000
s ce10.chrX             3180063 52 + 17718866 --------------------------------------------GCTCGGGTTTTGAGGACAAACGATTTGACAGCTCAAAAAAATTGACGCAAAA
s cb4.chrX              8241290 35 + 21540570 GAAGTG------------------------------------------------------AGAAc-----gagaactgaaaaaatttcaaataa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359022 89 -  4500979 GAAGAGTCACGGAAATTTCTATAAGGTTTAGGCAAGAGGGGTTGA--CACACTTTAGAGAGAAAC-----GACAGTTATTAAAATTTAGTATAGAA
i caeRem4.Crem_Contig0  C 0 I 37
s caePb3.Scfld02_0      1556118 45 +  4147112 --------------------------------------------g--caaatttgagaaaaaaaa-----aacagttctgaCAAGAGgaagtaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  178811 369 +   227596 I
e caeSp111.Scaffold629   460131 94 - 33334924 I

a score=-3914.000000
s ce10.chrX             3180115 24 + 17718866 GAAAAAGAGCG--------------------------AGAGAGAGGTATC------------------
s cb4.chrX              8241325 13 + 21540570 -------------------------------------tgaGAAAGCTTTC------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1556163 67 +  4147112 -aataagaaaaatatagGGATTACAGATCCACCACGGTGATTAATATTTcgagagaatgaaaatattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  178811 369 +   227596 I
e caeSp111.Scaffold629   460131 94 - 33334924 I
e caeRem4.Crem_Contig0   359111 37 -  4500979 I

a score=-3276.000000
s ce10.chrX             3180139 14 + 17718866 -TAGATTCGGAAATC---------
s cb4.chrX              8241338 14 + 21540570 -AATATTCCTAAA--------AT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359148 22 -  4500979 -CAGATTCTGAAACAACGATGAG-
i caeRem4.Crem_Contig0  I 37 C 0
s caePb3.Scfld02_0      1556230 24 +  4147112 caaaaacgggaaaaaacacaaatt
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17545  178811 369 +   227596 I
e caeSp111.Scaffold629   460131 94 - 33334924 I

a score=-2253.000000
s ce10.chrX             3180153 25 + 17718866 CTTTAATCAACAC---GATGTGCG------TTTT
s cb4.chrX              8241352 16 + 21540570 -CCTAAATCacac-----------------tttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359170 16 -  4500979 -CATACACcatta-----------------tttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   460225 34 - 33334924 ATTTAATCCATATCTGACTCTTTATggtattttt
i caeSp111.Scaffold629  I 94 C 0
s caePb3.Scfld02_0      1556259 28 +  4147112 atttaacAGATATCTGGTTACATG------TTTT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold17545  178811 369 +   227596 I

a score=21304.000000
s ce10.chrX             3180178 69 + 17718866 TGTT---AATCAAGAATTTTG---TAGCCGTG----------------CGTCATCTTATTGGAAT--------------TCGCGAGATGTCACAAATCATCTGAT
s cb4.chrX              8241368 89 + 21540570 tcttctaaattaACAAGTTTACGTAATTAAAG----------------CACCAACTTTTTGGGGCGGGACGAAGAGAATCTAGGAGATGTCACTGATCATCTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359186 90 -  4500979 tgtt---aattaaaGTTTTTGGGCAATGAGAGACTTGCG--------TCACCTCCATATTGGGAT----TCTTGGGGATTTAAAAGATGTCACAGATCATCTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   460259 72 - 33334924 tgtt---aattaaGAGTTCTCGAGAAGGCATG----------------CGTCAGAGtattgaaac--------------caaaaagatGTCACAGATCATCTGAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1556287 68 +  4147112 CTTT---AATTAAGATTTCC----AAGATAGA----------------CGTCACATTGTTGAACC--------------AACAAAGATGTCACAGATCATCTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  179180 85 +   227596 TGTT---AATTAAGATTTTCA---GAAGCGAGCGTTAAGAGCCGCTTGCGTCACCTTATTGGCAT--------------GGAATACATGTCACAGATCATCTGAt
i caeJap4.Scaffold17545 I 369 I 553

a score=442.000000
s ce10.chrX             3180247 6 + 17718866 CCACAA---
s cb4.chrX              8241457 6 + 21540570 GTGCAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359276 6 -  4500979 GTGcaa---
i caeRem4.Crem_Contig0  C 0 I 369
s caeSp111.Scaffold629   460331 9 - 33334924 GTGCAAtaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1556355 9 +  4147112 GGGCAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  179265 553 +   227596 I

a score=1287.000000
s ce10.chrX             3180253 26 + 17718866 ----AGAGAAGGATCCCTTGGTAAATAGAC
s cb4.chrX              8241463  8 + 21540570 ------tgaaagaa----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   460340 30 - 33334924 aggaaatgaaagacGCCAGGACAAATACAC
i caeSp111.Scaffold629  C 0 I 351
s caePb3.Scfld02_0      1556364 30 +  4147112 AGGAAATGAAAGGCGCTAGGACAAATACAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  179265 553 +   227596 I
e caeRem4.Crem_Contig0   359282 369 -  4500979 I

a score=-9419.000000
s ce10.chrX             3180279 137 + 17718866 GTGTGAAAGAACTGCCAAATCGGGAT-GTATAATGTTTACACGATTGTGTTTATTAGAAAAGTAATTCTTTGAAAC---------------ATGCAATAAGAAATGT----------TAATCTAAACGTTCCA--------------------------AAAATAGCTACCGGGTTTCATTA---AAACTTT-
s cb4.chrX              8241471 108 + 21540570 atgaagaaaagc-gTCAAAGTTGGCTACAATGACGTGCG----------AGAATCAGGAAA------------------------------ACTCCCAaataaatgt-----------aaaaaaaatattt----------------------------acaaTACTTTCAAG----TATTATGTAATCTCT-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1556394 167 +  4147112 -----------------AAGTGGGTT-CATTGACGTGAGCAC---CGCCAAAATTAGAGAAGAAATGTTT----ACCGGATTTTTGTTCTCacgacccaaaaattttgtttatttttgaacaaaaatgcCTTAAGACAGAAACGTTGGTTGATGATAccataaaagtttcaaag-ttcattCATTAAGGtttt
i caePb3.Scfld02_0      C 0 I 356
e caeJap4.Scaffold17545  179265 553 +   227596 I
e caeSp111.Scaffold629   460370 351 - 33334924 I
e caeRem4.Crem_Contig0   359282 369 -  4500979 I

a score=-950.000000
s ce10.chrX             3180416 211 + 17718866 ----AATATTAATTAAAAACAGTGTAGGGAAAATGGGGATTTTGTCAAAATCTATTCAACATTTTGAAATGGTAAAAAGTCTAAATACAGAATtgccatatttcctctattagtcttgcaaaactaattttcaattggttcgtaggagtgcaagtctaaaaaaagcagcaagactattttttgaatgctattttttaaattttagacttt---gaact
s cb4.chrX              8241579 122 + 21540570 TTTAAATAGTAAACAAGGATGTTATTTGCGGAATTAGGAATTCCGCAAAAACT--------------------------------------------------------------------GACTATTTTC-------------Ggattgaaattccagaaa------------tatttCTCAAG---TATTTTCTCAGTATTACAGTTTTTCGAACT
i cb4.chrX              C 0 I 19
e caePb3.Scfld02_0      1556561 356 +  4147112 I
e caeJap4.Scaffold17545  179265 553 +   227596 I
e caeSp111.Scaffold629   460370 351 - 33334924 I
e caeRem4.Crem_Contig0   359282 369 -  4500979 I

a score=0.000000
s ce10.chrX             3180627 76 + 17718866 ttgggccaaacattttttatagaaatcatagctggatattgtttaaacaatgaaaatacacacttttacacttttt
e caePb3.Scfld02_0      1556561 356 +  4147112 I
e caeJap4.Scaffold17545  179265 553 +   227596 I
e cb4.chrX              8241701 19 + 21540570 I
e caeSp111.Scaffold629   460370 351 - 33334924 I
e caeRem4.Crem_Contig0   359282 369 -  4500979 I

a score=-2636.000000
s ce10.chrX             3180703 567 + 17718866  
s cb4.chrX              8241720 459 + 21540570  
i cb4.chrX              I 19 C 0
e caePb3.Scfld02_0      1556561 356 +  4147112 I
e caeJap4.Scaffold17545  179265 553 +   227596 I
e caeSp111.Scaffold629   460370 351 - 33334924 I
e caeRem4.Crem_Contig0   359282 369 -  4500979 I

a score=1524.000000
s ce10.chrX             3181270 14 + 17718866 ATGCATTTCCCGAA
s cb4.chrX              8242179 14 + 21540570 TTGTCTCTCTTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359651 14 -  4500979 ATGTCCTTCTCGCC
i caeRem4.Crem_Contig0  I 369 C 0
s caePb3.Scfld02_0      1556917 14 +  4147112 atgtCCTCTCCGAC
i caePb3.Scfld02_0      I 356 C 0
e caeJap4.Scaffold17545  179265 553 +   227596 I
e caeSp111.Scaffold629   460370 351 - 33334924 I

a score=34203.000000
s ce10.chrX             3181284 155 + 17718866 ATAATTAGCATAGTGG-GACGAAACAGAACGCCGTATGG--CC-AGATGATGTCACATTAAGGAGCAAAAAGGGAGCGCCGTCAG------CTGGATAGGACATTGTTAGATGCGAATCATCCTATCGGTACTTTTACGTCTTATTC-AAAAGTATTCAAAGGGAC
s cb4.chrX              8242193 120 + 21540570 ATAATTACCATAATAGTCAAG--------------ATGG--CCGAGATGATGTCACATGAAACGG--------AAAAGCCGCCTGTGCTACTTCcttg-aaaattg-tggaaa-------tcgGGTAAATCTTTCCTCG-------A-AAAAGTATTC-----GAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359665 126 -  4500979 ATAATTACCATAATAG-CGAG--------------ATGA--GC-ACATGATGTCACATCAGATGG----------GAGCCGTCTG------CTCCTCG-AATATTG-TGAGAAAGAATTGTCACATCGGTACTTTTCCGTC---TTC-AAAAGTATTCAAAGGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   460721 138 - 33334924 ATAATTACCATAATAG-CGCGAGA---AACGCCGTATGG--CT-TGATGATGTCACATTAGAG------------GAGCCGACTG------CTCCTCGAAAAATTGTTGGGGGAGAATCGTCACATCGGTACTTTTTCGTC---CtcaaaaagtattcaaaGGGAC
i caeSp111.Scaffold629  I 351 C 0
s caePb3.Scfld02_0      1556931 133 +  4147112 ATAATTACCATAATAG-CGCGCGA---AACGCCGTATGGCACT-AAATGATGTC-----AGAT------------GAGCCTTCTG------Ctccctgaaaaattg-tgagaaagAATCGTCACATCGGTACTTTTCCGTC---TTC-AAAAGTATTCAAAGGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  179265 553 +   227596 I

a score=115870.000000
s ce10.chrX             3181439 177 + 17718866 TAGACATATACACGACACACACACAC---GCAAAAAAAGCG---------------------CCGCCTTTTCTGCTCA-CCAAATGAAATAAAGAAGAGAAAGAGGAAAG------------------AAGAAAAAGGAAGAAGAGAGGCTCCC---TTC-AGCTCGGGTCCCTCTTT------------GGCTGGATCATTGCCTACGGATATGTTTCAATAGTGGATTAGCGGG---
s cb4.chrX              8242313 184 + 21540570 TAGACACATATACGacatacga---------aaaaaaatagagaa----------------tcgGTTTTTCCCGCAGA-CCAAATGAAATAAAGACGAGAAAAGGGAAAGGAgctatagaaaaaaaaggaagaagaaagagaagagagggtcc--------ta--ctcttcttttttc-------------gttggATCATTGCCTACGGATATGTTTCAATAGTGGATTAGC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359791 168 -  4500979 TAGACATATACACGACACACAC---------aaaaaaaGCG---------------------CCGCTTCTTCCGCAGT-CCAAATgaaataaagacgagaaagaggaaag----------------aagaagaagaaaaagaagagaggctCCC---TTCATG--CGGGTCCCTCTTC-------------GCTGGATCATTGCCTACGGATATGTTTCAATAGTGGATTAGC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   460859 178 - 33334924 TAGACATATACAcgacacacac---------aaaaaaagcG---------------------CCGCTTTTTCCGCAGA-Ccaaatgaaataaagaagagaaagaggaaag-----aagaagaaggaggaaagaagaagaagaagagagggtCCC---TTC-AG--CGGGTCCCTCTTC-------------GCTGGATCATTGCCTACGGATATGTTTCAATAGTGGATTAGC------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1557064 155 +  4147112 TAGACATATACAcgacacacac----------aaaaaagcG---------------------CCGCTTTTTCCGCAGACCCAAATGAAATAAAGACgagaaagagga----------------------------aagaagaagagaggcTCCC---TTC-AG--CGGGTCCCTCTTT-------------GCTGGATCATTGCCTACGGATATGTTTCAATAGTGGATTAGC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  179818 199 +   227596 tatacaTATACACGACACAtacacacagaaaaaaaaaatagaaaaagacgGTGGCTCTTCTTTCCTTCCTTTCACAgc-cgaaatgaaataaaaaggagAGAAGAGCACG---------------------------------GAGAGTTTCTTCAGCTC-AG--CGGGTCCCTCTTTTCGGCTAGCCGCGGACGGATCATTGCCTACGGATATGTTTCAATTGTGGATTGGC---TGG
i caeJap4.Scaffold17545 I 553 I 1834

a score=29302.000000
s ce10.chrX             3181616 1160 + 17718866  
s cb4.chrX              8242497 1279 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   359959  985 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   461037  965 - 33334924  
i caeSp111.Scaffold629  C 0 I 31
s caePb3.Scfld02_0      1557219 1276 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  180017 1834 +   227596 I

a score=-8829.000000
s ce10.chrX             3182776 24 + 17718866 GTACTAATATAGCCCAAA--------------------------ACCCAT-----------
s cb4.chrX              8243776 32 + 21540570 ACTTTGTTAACGAAAAGA--------------------------AGTTCTAAAGTtg---t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   360944 61 -  4500979 tttctgaaaaaaaaacaagcataTACAATTACATAAAACATTTTACTTCTGGAGTTGGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1558495 27 +  4147112 ---TCAGTAAGAAATTGA------------------------TCAATTATCTAt-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  180017 1834 +   227596 I
e caeSp111.Scaffold629   462002 31 - 33334924 I

a score=2327.000000
s ce10.chrX             3182800 116 + 17718866 GTAAA------ACAATAAAATA-----TTATGACCTAT-AAAACAAT----TTAATTCGAGTGAAGTGGT---TTAACATCAAACTTAAT-----------TGGAA------------AGCATTCAAACTTT---GCGGCAGGAACCCTCCTCACCTCGCC
s cb4.chrX              8243808  91 + 21540570 gaaaacaaatttcgatATAGTA-----------------------------TTGGCA--ACGAAATCTAG-------------------------------AGAAACCATCA------AACATTAAAACTCTGCGGCGGCGGCAA-TCGCGGCACCCCG-C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   361005 145 -  4500979 TAAAATTGG--TCAATAAAATACCTAATTATGTCTTTA-AAAAGAATGAGTTCAGTA--ATAAAATCAAACTATTTATGTTTAATTCGATGTTAAACGATTGAAAAGCTTTG------AACATTAAAACTCT---GCGGCGGGAA-TCGCCGCACCCGG-C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   462033 146 - 33334924 ATAAAATGG--TCgataaaaaa---tgttataGCTATACAAAACTATGAAATTAATACGAGGAAAATTGGATATTTATGTTGAGATCAAT-GAAAACGTTTTAAAAGCTTTCG-----AACATTAAAACTCT---ACGGCGGGAA-ACGGCGCACCCGGCC
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_0      1558522 144 +  4147112 --------g--tgaataaaaac---aatttcaattgagCAGTTCAATAAAGTTAGCTGCACGAAAACTGGGTATTTATGTTCGAGTTATTGGAAAACGTTTTGGAAGCATTAAAACTCAACATTAAAACTTT---GCGGCGGCAA-ACGCCGCACCCCAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  180017 1834 +   227596 I

a score=44200.000000
s ce10.chrX             3182916 106 + 17718866 GCGCTATCACGATAATTATCTTGATGAATTGGAAACAAGTGATTTTACACTG--------AAGCTTTCGAGCTCAAAACA----AAAGAGCT------------------CGCCGGATGAACCAGAAGGCAGA--AAT
s cb4.chrX              8243899 103 + 21540570 GAGC---CGCGATAATTATCTTGATGAATTGGTAACAAGTGATTTTACACTGAT--CACAAAGCCCAGAAGCTC----CG----AAAACCAG----------------------GAAAAAGTGGCAATACATCCCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   361150 131 -  4500979 GCGCTATCACGATAATTATCTTGATGAATTGGAAACAAGTGATTTTACACTGGT---GGAAAGCTTTTGTGCTCAAAACA----AAAGACAGAAATGTGTTTGAGCCCACCGtcaaagaaatcaagaaacagaacaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   462179 115 - 33334924 GCGCTATCACGATAATTATCTTGATGAATTGGAAACAAGTGATTTTACACTGGTCCTCGACAGCTTTTGTGCTCAAAACAAAGCAAGGAATG------------------AGTCGACAAAGCCAAGAGc-----agaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1558666 110 +  4147112 GCGCTATCACGATAATTATCTTGATGAATTGGAAACAAGTGATCTTACACTGATTGCGAAAAGCTATTGagctcaaaaca----aaagaatt------------------tgTCGATTGGAGCAAAAgt------gaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  181851  86 +   227596 GTGCTATCACGATAATTATCTTGATTAATTAGAAATAAGGGATATAACACTGGC---CAACAGC------------AACG----AAAACACT------------------AGGGGAAAGAact---------------
i caeJap4.Scaffold17545 I 1834 I 40

a score=-3215.000000
s ce10.chrX             3183022 32 + 17718866 ACAATTTTTCT-AG--------CCTCTACTGAA----TCTCAAAA
s cb4.chrX              8244002 36 + 21540570 AAATACCTCGGCTA--------ACCAAAATACAAGTGGAAAAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   361281 35 -  4500979 aaagttttttg-tg--------cCGATATTGAATGTATCTCAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   462294 44 - 33334924 atacatttttt-ttgtcctATGCCGTTATTGAACATGTCTCAAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1558776 36 +  4147112 tcacttttttg-tt--------tcgttatTGAACGTATCTCAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  181937 40 +   227596 I

a score=60338.000000
s ce10.chrX             3183054 149 + 17718866 TACAAGTGGGGGGAACAGAACAG-ACAATAGAG-CCGAC-----TGATAAGAATAGATAAATATTGAGC--AAGTAACTGTCAAATAAAGGG---G--TGAGATAACC------AG-GAGA-------TGATCAGTGAACAG----------AAAACAGAAAGCACAGAAAACACAGAAAACCACAG
s cb4.chrX              8244038 141 + 21540570 ---------GCAGAACCGAACAGAACAGTAGGG--AGAG-----TGATAAGAATAGATAAATATTGGGCCACACTAACTGTCAAATAATGAG---ATGTGAGACAACT------AGAGAGGCGAGTGGTGATCAGTGAACAG----------AAAACAGaaagcagagaaaaaat-----------g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   361316 137 -  4500979 ---------GGAGGGCAGAACAGAACAATGGAGTCCGAG-----TGATAAGAATAGATAAATATTGAAC--AACTAACTGTCAAATAAAGAG---A--TGAGATAAGT------AACGAGGAAA----TGATCACTGAACAG----------AAAGcagaaaacacagaaaaact---------CAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   462338 141 - 33334924 TACAAGT-GGAAGGGCAGAACAGAACAATGGAGTCCAAG-----TGATAAGAATAGATAAATATTAGAGAGAACTAACTGTCAAATAACGAG---A--TGAGATAACT------AGAGAGG-------TGATCACCGAACAG----------AAAGCAGAAAACACAGGCTACCT------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1558812 123 +  4147112 TACAAGT-GG----------CAAAATACAAGTGGCAGAG-----TGATAAGAATAGATAAATATTGAaccaaa--aactgtcaaataaCGAGGAAA--TGAAATAACT------AGAGATG-------TGATCACTGAACAG----------AAAGCAGAAAACAC---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  181977 157 +   227596 TGCAAGT-GG-------GCACAGAACAACGAAAGTCGGACTTCTTGAAAAGAATAGATAAATATTGAAC--GACAAACTGTCAAATGATGAT--AA--CCAAAAGACTAAAGTAAGAGAGT-------TGCTCATTGAGCAAAATCAGTCACAAAGCAGAAAACACAGTTGATCG---------CGG
i caeJap4.Scaffold17545 I 40 I 44

a score=-9421.000000
s ce10.chrX             3183203 61 + 17718866 GCTACAACGCGTTGATC--------CGGATTT--CATTTTCACACGTATTACATTATATCTTAGTTCATCG
s cb4.chrX              8244179 56 + 21540570 gtCAGAATGACCTGGATTGAAAAgatatatttttagatttttc-------------tattttattcc--GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   361453 58 -  4500979 GATGTGATGACTCGACCTTCGCTGCCatgtttttcaagttcaa-------------aactTCAGTTCTGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   462479 48 - 33334924 ---GGGAAAAGTtgact--------cacttttttcaacccAAC------------GTATTGTTGTTCTCAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1558935 34 +  4147112 ---GGGATGACCTGACC--------CAATCCT----ACTCCAC----------------------CCTCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  182134 44 +   227596 I

a score=136945.000000
s ce10.chrX             3183264 276 + 17718866 TGGAATTTTACGTT----------AAAAAAGAGAAGCAAAAC-AAGT------TTTGTTCC----AGCTAGCCTCTT----CTTTTTTTGGAACT--GGCAATCAAATTGTATT-----CTCGCCACACGAAAACTG-GCTAATGGCA-CCCGTGGGTTGATAAAGTGTAAAAGAATGGGGCAGGAAGTGCCCCGC-------GGAGCATGCCTTTCTCCTC-----------CTCATTCCCC---CC--TCTCTCCGCTGCTGTTCGGTGG-CGAAAAAAGTGATCCGC----AAACACATATCATAACAAGATATTGAAACCTT-TTGCTTCTCGTT
s cb4.chrX              8244235 313 + 21540570 TGAGAGTT------------AACAAAAGAAGAGCATAAAAATGAAGAGCTAGGTTAATTTTCTcaagaacttttttctctattttttttggaactcaaGCAATCAAATTGTATTCG--CCTGGC--CACGAAGACTAGGCTAATGGCACCCCGTGGGTTGATAAAGTGTAAAAGAAT--GGCAGGAAGTGAGTTGCTGCGAGATGAGCATGCTTCTCCTTTCTCTTCAAACGCCTCATCCGCC---CCGTTTTCTCTGCTGCTGTTCGGAAACAAAAGAAAGTGATCCGC----AAACACATATCATAACAAGATATTGAAACCTT-TTGCTTCACATT
i cb4.chrX              C 0 I 807
s caeRem4.Crem_Contig0   361511 288 -  4500979 TAACATTTTACGTTTGTCACAACAAAAAAGGGGAACAGAACC----AATTGTGttactttc----agattttttttc----tttttttcggaact--gGCAATCAAATTGTATG-----CTAGC--CGCGAAGACTA-GCTAATGGCA-CCCGTGGGTTGATAAAGTGTAAAAGAAT--GGCAGGAAGTGAGTGCC-------CGAGCATGCTTCTCTTTCC----------CCTCATTCACTCCGCCGTTTTCTTCACTGCTGTTCGG----GCAAAAAAGTGATCCGC----AAACACATATCATAACAAGATATTGAAACCtt-tctcttctcgtt
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   462527 280 - 33334924 AAACTTTACACAATTTCACAcccggaaaaaag--aaaaaaat-aagattcGTCTTTGTTTC----AGCTTTCTTGTC-----TTTGTTTGGACCT--GACAATCAAATTGTATC----TTTTGC--CACAAAAGCTT-GCTAATGGCA-CCCGTGGGTTGATAAAGTGTAAAAGAAT--GGCAGGAAGTGAGTGCT-------CGAGCATGCTTCTCTTCCC----------------TCATC---CCCCTTTCCTCACTGCTGTTCGG----GTAAAAAAGAGATCCGC----AAACACAATTCATAACATGATATTGAAACCTT-TCACTTCTCGTT
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1558969 272 +  4147112 GAA----AAAca-----gaacacagaaaaaagtaataaaaat-aagtttgtgggttttttc----ag-tctctcgt----------tttggaact--gaaaatcaaattgtaTC-----CTTGC--CGCGAAGACTA-GCTAATGGCA-CCCGTGGGTTGATAAAGTGTAAAAGAAT--GGCAGGAAGTGAGTGCC-------CGAGcatgcttcttcttcc----------cctcatTCTTC---CCGTTTTCTCTGCTGCTGTTCGG----GCAAAAAAGTGATCGGC----AAACACATATCATAACAAGATATTGAAACCTT-TCTCTTCTCGTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  182178 241 +   227596 -------------------------------------------tggaattcaGTTTCTTCC----GACCAACAAGCC-------------TAACC--GACAATCAAATTGTACCCATCCCATCC--CGCGGCGGCTA-GCTAATGACA-CCCGTGGGTTGATAAAGTGTAAAAGAAT--GGCAGAGTGCCCGAGCC---GAGCCGAGCATGCCTTGCTCACT------------------------CT--TTTCCCCGGGGCTGTTCGCACG-GCAAAAAAGTGATCCGCAAGGAAGCACATATCATAACAAGGTATAGAAACCTTCTCTCttctccgc
i caeJap4.Scaffold17545 I 44 C 0

a score=13141.000000
s ce10.chrX             3183540 112 + 17718866 TCGTTTAAAGCAAAGACACAAAAAAAAAACGTCGAATGATCG-GGTTCATAAGTGCCTTGAGGCACTTATGAAACTT--TTAGTGAGA---TGGCAT--------AT-ATTCAATATTCCGGTTATA
s caeRem4.Crem_Contig0   361803  88 -  4500979 ctactgaaagcaaaaaaa-------------------gatcg-AGTTCATAAGTGCCTCGAGGCGCTAAAGAAACTT--TCGGAGCTA---CTATTC--------CT-ATTC-ATA---CTGTAAT-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   462808 104 - 33334924 TTGCTGAAAGAATGGATTAAAACGA--------GAGTGATCGAGGTTCAGAAGTGCCTCAAGGCATTCataaaacgt--tttgaaaaa---gtatgt--------ATGATGT-ATATTTCtgtcat-
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1559242 103 +  4147112 TCGttgaaagcaagaaaaaaactga--------gagtGATCG-GGTTCATAAGTGCCTCGAGGCACTTATGCaactttctttgaaaaa---tgatat-----------attc-atttttctgttatg
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545  182419  94 +   227596 ctcttcacgggAAGAAGACAGGAAA----------ATGATCG-GCTTCATAAGTGCCTCAAGG-------GAAACTT--TTAGTGAGAAGGGGGTATTGAATGTGAT-Gttt-ata-----------
i caeJap4.Scaffold17545 C 0 I 727
e cb4.chrX              8244548 807 + 21540570 I

a score=-582.000000
s ce10.chrX             3183652 9 + 17718866 CATCATCTT
s caeRem4.Crem_Contig0   361891 5 -  4500979 -ATCCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1559345 9 +  4147112 GATTCTCTT
i caePb3.Scfld02_0      C 0 I 495
e caeJap4.Scaffold17545  182513 727 +   227596 I
e cb4.chrX              8244548 807 + 21540570 I
e caeSp111.Scaffold629   462912 0 - 33334924 C

a score=-3222.000000
s ce10.chrX             3183661 66 + 17718866 TTCACTTCTTTTATTGACAGATAAG---------------TCAGGAAAA-------CACGAGAAAA--------AAGTTTTCTGCAGTTATATAAA
s caeRem4.Crem_Contig0   361896 82 -  4500979 TTTATTGGTTTTCTTTGCATATGTGAAATCACTGTAGCTCTGAGCAAAA------TCCTAGGAAAA--------AGTATTTctccaaaaacagaaa
i caeRem4.Crem_Contig0  C 0 I 126
s caeSp111.Scaffold629   462912 79 - 33334924 ------atttttctt------catgatATCACTATGAACATCATCAAGAATGATGTTTTcggtaacttttttctaatttccctctaataaa-----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1559354 495 +  4147112 I
e caeJap4.Scaffold17545  182513 727 +   227596 I
e cb4.chrX              8244548 807 + 21540570 I

a score=1008.000000
s ce10.chrX             3183727 36 + 17718866 TGTTCATAAAAAAACGTTTTCAATGTTAGAAAATGT
s caeSp111.Scaffold629   462991 36 - 33334924 attttcaaaaaaaatacttttaattttttaaactgt
i caeSp111.Scaffold629  C 0 I 159
e caePb3.Scfld02_0      1559354 495 +  4147112 I
e caeJap4.Scaffold17545  182513 727 +   227596 I
e cb4.chrX              8244548 807 + 21540570 I
e caeRem4.Crem_Contig0   361978 126 -  4500979 I

a score=0.000000
s ce10.chrX             3183763 934 + 17718866  
e caePb3.Scfld02_0      1559354 495 +  4147112 I
e caeJap4.Scaffold17545  182513 727 +   227596 I
e cb4.chrX              8244548 807 + 21540570 I
e caeSp111.Scaffold629   463027 159 - 33334924 I
e caeRem4.Crem_Contig0   361978 126 -  4500979 I

a score=91.000000
s ce10.chrX             3184697 1 + 17718866 A
s caeJap4.Scaffold17545  183240 1 +   227596 A
i caeJap4.Scaffold17545 I 727 C 0
e caePb3.Scfld02_0      1559354 495 +  4147112 I
e cb4.chrX              8244548 807 + 21540570 I
e caeSp111.Scaffold629   463027 159 - 33334924 I
e caeRem4.Crem_Contig0   361978 126 -  4500979 I

a score=13409.000000
s ce10.chrX             3184698 31 + 17718866 CCGGAAATTTCAATTTATTACCTCGG--CGGTG
s caeRem4.Crem_Contig0   362104 31 -  4500979 CCGGATGTGATGTTTTATTACCTAGC--TCGCG
i caeRem4.Crem_Contig0  I 126 C 0
s caeSp111.Scaffold629   463186 33 - 33334924 CCGGATGTGATGTTTTATTACCTAGCTTTCGAG
i caeSp111.Scaffold629  I 159 C 0
s caePb3.Scfld02_0      1559849 31 +  4147112 CCGGATGTGATGTTTTATTACCCAGC--TCGAG
i caePb3.Scfld02_0      I 495 C 0
s caeJap4.Scaffold17545  183241 31 +   227596 TCGGAAGTTTTGTTTTATTACCTTGC--TTCCA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8244548 807 + 21540570 I

a score=20996.000000
s ce10.chrX             3184729 62 + 17718866 ATGATTCATGAAA-GGAAATAA-AATAGGAG-----------------------CGGAA--------TAGAGCACAAACTTATTTTGTGAAGCGG
s cb4.chrX              8245355 87 + 21540570 ATGATTCATAAAA-GGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAG-------CTGAAGACCAAACTTATTTTGTGAAGAGA
i cb4.chrX              I 807 I 12
s caeRem4.Crem_Contig0   362135 75 -  4500979 ATGATTCATGGAC-GGAAAtaa-agagaagg--agagaaaattgtcAG------TGAAG-------CTGGAGACCCAAGTTATTTTGTGAAG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   463219 79 - 33334924 ATGATTCATGAAA-GGAAATAG-GACGAAAG-------AGTTggcaaaatg---agaaaacc----tTCAAGACCAAACTTATTTTGTGAAGGGG
i caeSp111.Scaffold629  C 0 I 96
s caePb3.Scfld02_0      1559880 74 +  4147112 ATGATTCATGGAACAGGAATAG-ATGGAGAG----------TTGTGAGAGG---TGAAG-------CTCAAGACCAAACTTATTTTGTGGAGAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  183272 90 +   227596 ATGATTCATGAgt-ggaaacaa-aaaagaaaaacggcaAGGACGTGGGGCG---TGGGAAGCActttttggcgaaaaacccATGTTGCGAACTAG
i caeJap4.Scaffold17545 C 0 C 0

a score=8711.000000
s ce10.chrX             3184791 69 + 17718866 -----------TGTTGAAGAAGAGCGCGTCTAGGACAAAGTTG-----AGATCGG---GTAGGAATTTAATTAAAA---TGC--GAGACAGGA
s cb4.chrX              8245454 78 + 21540570 -----------AGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGgggtgaa-aaatttaattaaaa---tgCGAGAGGCAGGC
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   362210 58 -  4500979 ---------------TAGGGTAAATGC-----GGGGAAGGTT------GGATCGG---AAA-GAATTTAATTAAAA---TGC--GAAGCTGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1559954 59 +  4147112 --------------------GAAACTCAAAGAAAGGAAAGTTT-----GGATCGA---GTA-GAATTTAATTAAAA---TGC--GAGACGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  183362 85 +   227596 agaaaattggaaacaaaaaatggatgAAAGAATGGATAAATTGGAT--AGATCAA---GTg-gaatttaattaaaaatgcgC--GAGACAAGA
i caeJap4.Scaffold17545 C 0 I 403
e caeSp111.Scaffold629   463298 96 - 33334924 I

a score=12453.000000
s ce10.chrX             3184860 158 + 17718866 CCGAATG----------CTCCACGCTCGACTTGCCAGTTTAATGGAGTTGCAC-TTTGACTGTA-TATTACCGCGAGCTTTTGTT--------TTTTTTTTTCAGATAACAAAA------------------ATAG-------AGACAAAAAACAGACAGAATCTGAATGAGGAAGAGTGAGCAGGCACTGGTGACTGTG-AGA
s cb4.chrX              8245532 181 + 21540570 ACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCAC-TTTTACTGTATTTGAAGTGTCAacatctcttcttttttcctttttttttgtttttccaga-agcttcttcTTTTGGAGCTATTA-----TGACGAAAAACAGACAGAC------------AGAATGAAAATG----AGTAACcgtgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   362268 160 -  4500979 CCGAAAA----------CTCCACGTTCTGCCTGCCAATTTGATAGAGCTGCAC-TTTTACTGTA-TTGAAGTGTCagcctcttttctctcttatttttttctcatt-----------attctgtttttgtggatat-------cgaaaaaaaacagagacaT-------AAGCAAGAATGGAAATG----GGTGAGCG---AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560013 172 +  4147112 CCGAGAG----------CTCCACGTTCCGCTTGGAAATTTGATAGAATTGCACTTTTTACCGTT-ATGAAGTGTCAGCCTGTTTTCACATCCACTCTGTTTTGAGCAAAGAAAATAACAGATAcatttgagaataaaaatgagtgGTGAAAACGAGCG----------------GGAGAGAGAATG----AGTAAccgtg-aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  183447 403 +   227596 I
e caeSp111.Scaffold629   463298  96 - 33334924 I

a score=18006.000000
s ce10.chrX             3185018 128 + 17718866 --ATGAAAAATAATGAAAACAGACATAGTCTGGAATGGCATTAATTCCATTTTCAGGGAGA------CTGAA----------------TCTTTTGCCGCG--AAAATGAGAGAAAAAGGATAGGATGAAGGG------------------TCTCGTGCTTTCAGAAGAGCTT
s cb4.chrX              8245713 123 + 21540570 --ataa-------tgaaaaca-cGGAACACTGGAAGGCCAttaattccattttcagacaaaaa---gcTGAA----------------TCATCttgagaaatagaaaaagagaaaaaatggaagagacCAGGA-----------------TCTTGTGGTTTTGGAAGAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   362428 133 -  4500979 --ATGAGTATCCGTGAAAACAGCCATAGTCTGGAATGACATTAATTCCATTTTCAGGCGAAAA----CTGAA----------------TCCTCGTCTATGCAAAAATAAGAGGAGAATGGGGGGATGACACTT-----------------CCTCGTGAATTCAGAAGAGCCT
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      1560185 124 +  4147112 --atgaaaa----tgaaaacagacaTCGTCTGGAATTTCAttaattccattttcaggc-----------GAA----------------TCCTcttcattggaaaaataggagcaaaataggaaaaagaagagaag---------------agtggAGCCTTCAGAAGAGCCT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17545  183850 164 +   227596 ATACAAAATGACACAAAAACAAACACCG-CTGGAATGTCATTAATTCCATTTTCAGGATGATGAATACTGAAAACCATCTATCTCATCTCATCCGTCtgggaaaaaaatgaggaaaaaggaaaaaagcaaaaaaaaaaaaacaacagagcTCTCGT---CTCATGAGT----
i caeJap4.Scaffold17545 I 403 C 0
e caeSp111.Scaffold629   463298  96 - 33334924 I

a score=-1897.000000
s ce10.chrX             3185146 28 + 17718866 TTCCG-TATCT--CGACACAAGAGAGGG---CAC----
s cb4.chrX              8245836 10 + 21540570 ---------------------GAGAGGGTGC-------
i cb4.chrX              C 0 I 294
s caeRem4.Crem_Contig0   362567 22 -  4500979 TTCCGTTATCC------AAAAGAGAGGG----------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   463394 25 - 33334924 TTCCGTTAtct--cgg-aaaaaagaggg----------
i caeSp111.Scaffold629  I 96 C 0
s caePb3.Scfld02_0      1560315 25 +  4147112 TTCCGTTAtct--aga-aaagaagaggg----------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17545  184014 31 +   227596 TCCCGTAATCTGGCGA-GCTAAAGGGGG------TCAC
i caeJap4.Scaffold17545 C 0 C 0

a score=15768.000000
s ce10.chrX             3185174  73 + 17718866 ---------ATACACA------------------TACCACTGGTATCACATTTGATTGCTTTTTC------GAGAATCCA-TCCGCATTT-------------------------------CTTTTCAAAATTGAATT
s caeRem4.Crem_Contig0   362589  64 -  4500979 ------------CGTA------------------CACCATTGGTATCACATTTGATTGCTTTTTT------GAGAAGCAGCTTTGTTTAG-----------------------GGATTTTGGT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   463419  94 - 33334924 ----------------------------------cACCATTGGTATCACGTTCGATTGCTTTTCG------GAGAATCCA-TCCGTTTAG---AGGTCTCGGGGTTGGGTTTtggtttctgtttttcgaaattaaatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1560340 101 +  4147112 ------------cGCA------------------CACTATTGGTATCACATTTGATTGCTTTTCC------AAGAACCCA-TCCGTTTAGGAAGGGTCTTGCGGTTTGGTGTTGGGTTTTggctttcaaaattgaatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  184045 107 +   227596 ATTCCAAACATGCGCACCGCATCGCATCGCATCGCACCATTGGTAGCACGTTTGATTGCTTTTTCAAGAGAGAGAATACA--CTGAAtgg-----------------------------cgtttttcgaaattggaTT
i caeJap4.Scaffold17545 C 0 I 311
e cb4.chrX              8245846 294 + 21540570 I

a score=819.000000
s ce10.chrX             3185247 3 + 17718866 TTT
s caeSp111.Scaffold629   463513 3 - 33334924 ttt
i caeSp111.Scaffold629  C 0 I 499
s caePb3.Scfld02_0      1560441 3 +  4147112 ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184152 311 +   227596 I
e cb4.chrX              8245846 294 + 21540570 I
e caeRem4.Crem_Contig0   362653 0 -  4500979 C

a score=273.000000
s ce10.chrX             3185250 1 + 17718866 T
s caeRem4.Crem_Contig0   362653 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560444 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 60
e caeJap4.Scaffold17545  184152 311 +   227596 I
e cb4.chrX              8245846 294 + 21540570 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=242.000000
s ce10.chrX             3185251 57 + 17718866 TTGTTCTCCCACCCTTCTCCCCCTGATTCTCTAC-CTAAATGAGAAAAACCAAAAATC
s caeRem4.Crem_Contig0   362654 48 -  4500979 TTGGT-TCTCAATATTGAC-------TTTTCTATactaaattagaaaaa--aataatg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1560445 60 +  4147112 I
e caeJap4.Scaffold17545  184152 311 +   227596 I
e cb4.chrX              8245846 294 + 21540570 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-2522.000000
s ce10.chrX             3185308 72 + 17718866 CCAAAACACGAGTCACAGTGTGTACTGTGTATTATGCTCTTTCATCCGGTCTTCAAT-------TAATTCATCATATTT
s caeRem4.Crem_Contig0   362702 60 -  4500979 --tggaggcaattaa---------------gtttttttaattaatcCA--CATGAACTCATTGAAACATATACACGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560505 61 +  4147112 CAGAAAGACCATTCA-AGTG----------GTCATTTCAGATGCTCCAGTAATCaac-------aatctcaaaattttt
i caePb3.Scfld02_0      I 60 C 0
e caeJap4.Scaffold17545  184152 311 +   227596 I
e cb4.chrX              8245846 294 + 21540570 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-9446.000000
s ce10.chrX             3185380 45 + 17718866 CTAAGTAC--GAACT-----------CGTCTT-------GGTAAAATAA--------AACTTGGAAAAAATTG-----------------
s cb4.chrX              8246140 79 + 21540570 ctcaatgT--GGACTTATCGGATGGGCTTCTAGTAG---AGCAAGAATGGA------AACCCAAAACAGACTGATCTCAGTGATTCTCTA
i cb4.chrX              I 294 C 0
s caeRem4.Crem_Contig0   362762 39 -  4500979 -TTGATGTTCGAACT-----------CTTCTG----------AAGAAT---------AACGTGAAA--------------------TTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560566 57 +  4147112 --cagaga--aaact-----------atTCCAAAAGTTTAGTAGGAAAACATTCttgatcccaaaa-aaattg-----------------
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold17545  184152 311 +   227596 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-1351.000000
s ce10.chrX             3185425 25 + 17718866 ATGAAATAGCAGAATAGCCCCTCCG
s cb4.chrX              8246219 16 + 21540570 ATGAAGTAAGTATATA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   362801 11 -  4500979 ATGACCTACGG--------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1560623 20 +  4147112 I
e caeJap4.Scaffold17545  184152 311 +   227596 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-13036.000000
s ce10.chrX             3185450 102 + 17718866 AGTGCAATTCTCACAAGACCTCTAG-----ATCCAATTGACCTCTG------------------------AT------------AGAACTCT------------------CAT---CTTCGTCATCTGGAATA-----------TCAAATTTCAGCGGTCGTGTTTTTCAGAACT---
s cb4.chrX              8246235 139 + 21540570 --ATTGAAAtccaaataaaaaatat-----atctcATTAATTTTTGACCCACGGTTCTTCTTTGTCCTCAAGTTGTC-------cgaactttttctctttttccatttaTCCT---CTTTGCCATCTGCAATA-----------TCATATTTCAA----------AGGCTGCATTTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   362812 107 -  4500979 ------------AACCAATACGTAT-----ACTTTGTTGAGTCTTG---------TCTTTTGAGCC----AGTAATCGGGGTAGCGAACTCT-------------------------TCTGTCAtctgaaata-----------tcaaatttcaa-----gacTTATCCTGTGTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560643 133 +  4147112 agagtagttttcaaaaaaccaattccaGCAAATGTATTAtctcttg----------ctcttttttc----aaaaatcagaaattcaaaattt------------------ccttagCTCAGACCGCTATGaaaaaaaCGGAcacttttattttga----------ttttagaaCT---
i caePb3.Scfld02_0      I 20 I 140
e caeJap4.Scaffold17545  184152 311 +   227596 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-6062.000000
s ce10.chrX             3185552 158 + 17718866 TCTTTCGAAAAAAAGCTACGTAGAGGAATAAAGTTACTTGGATTGAAATTGGTAAAGGGAAGGGTCAATGTGGTCAATTGAAAAAAGtaaaaaaaataaaatttgtataagaaat---attgatataattgaataattaCAGGAAAAAGAAATAAAAATAT
s cb4.chrX              8246374  90 + 21540570 ---------------ACATGT-------------------------GACC----Aagggaaa-----------ttttcagagagaa-----caCGAT--------GAAAAGTAATTGGATCATTCTA---GAAAGGAGATATGAATAAGGAATGAGGGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   362919 132 -  4500979 ------GCTCAAAAAATATGTTAAGACACGA------------TAAAATC----aaggaaaa-gtggaaaaggttctttgagaaaatagttcaaaatga------gagaagaagcTTTGTCAATGTATTGGGAGTAAAACACAAATcttaatttagttttt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1560776 140 +  4147112 I
e caeJap4.Scaffold17545  184152 311 +   227596 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=-30050.000000
s ce10.chrX             3185710 242 + 17718866 TAATAGCATAAAAATAGTACAAGATAAAATAAATCATATAATTATGCATCATA--ATTTTCGATGACCCGAATGTTT-AAAGTTTTTAGTAATTGTTTTCAGATAAATCTCACAAGCTCCAA----AAAAAGACAAAAAT----GAAATCTAATAGTTTTTGATATTGAAAAACAAAAATGAAAATAAATTTGCTTCTCTAAAAG----TTTTC-TCAAATTCTCCAACACATTCGTTTTATGTATTCCTGGTAAACA----------------------
s cb4.chrX              8246464 156 + 21540570 GAGAATTTTcc----agtgaaa---------aattttgaag------aaaata--tttcttcatagctccaattttttgaaacttactg------------------------aaaatccaa----aaaaataaatgaag----taAAT-------------------------------------------------ATAAAAGAAACCGAAC-AAATAATCCAGAATATGTA--------------TGTGAGTTCG-------AGTTTTagaataaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   363051 169 -  4500979 t----ttttccgaaaagtacAA---------AATTCTATCA------AACACA---------ACGGGACTA-------GGAATATatgg------------------------aaaattaaatttcaagtCTGGATGAAGAGGTCAAACGTCCT------------------TCAGGAG---------------TTCAACGAAAGGGA-CGGAC-ACAAAATTACAAATATATT--------------CTGGAATACGAGGGCATAGTTTTGA---AAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1560916 178 +  4147112 -----------gaagagtaTAAAAACAGTTCAACTCTATaa------aaaaaaGGCGCCCGAAGAGTCCGA-------GGAACGCCATG------------------------AATATTTT-----AAGACTACCAGaga----caaatttcat--tttctgtcagtAGAGGTCATGGG---------------TCCTTTCAAAAGTT-TGCCCTACCAAAACAGAAATATATT--------------CTGGAAAATGCttga--agtt-----------
i caePb3.Scfld02_0      I 140 C 0
e caeJap4.Scaffold17545  184152 311 +   227596 I
e caeSp111.Scaffold629   463516 499 - 33334924 I

a score=112553.000000
s ce10.chrX             3185952 178 + 17718866 AGCACAAAAAA-GGATGAAAATG-AGAAATGTCATCTATTTCGAAGAAAAGTGGAAGGAAGA---------GATCACAAAACATTGAT------------------ACAC--TTTTAGTACAT-GGAAAGGGCGAGATAAGGCGTGAGAGCTC--GACG-----GCAAAAATGGAACAAAGGAGACATTCATAAAGTGGGTACATGACAG---CTCCTTT
s cb4.chrX              8246620 194 + 21540570 agaaagaaaaa-agacgggaatg-aaaaatttcatctatttcaaggaaaaaa---aagaagaggggcAAGGGACCACAAAACATTGATACACACAAAACCACAAACACAC--TTTTAGTGCAT-GGAAAGGGTAAGATAA-------GAACCGGAGAGGTT----cctagaag----aaaaaagacattcATAAAGTGGATACATGACAG---ATCCTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   363220 182 -  4500979 Aggcaaaaaga-agagggaaatg-agaaatgtcatctatttcaaagaaaaaa---aggaaga---------caCCACAAAACATTGAT------------------ACAC--TTTTAGTGCGT-GAAAAGGGTAAGATAAGGCGTGTGAGCTCAGAAGGTTTGAGCCtaaaaagagcaaaagaaaCATTCATAAAGTGGATACATGACAG---ATACTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   464015 180 - 33334924 gaagaaaaaagcaaagggaaatg-agaaatgtcatctatttcaaaggaaaaa---gggaaga---------cACCACAAAACATTGAT------------------ACAC--TTTCAGTGCAT-GAAAAGGGTGAGATAAGGCATGAGAGCTT--GAGGTTCGcccgaaaaaagag-caaagcGACATTCATAAAGTGGATACATGACAC---ATCCTTC
i caeSp111.Scaffold629  I 499 C 0
s caePb3.Scfld02_0      1561094 188 +  4147112 ggagaaaaaaa-agagggaaatg-agaaatgtcatctatttcaaagaaaaaaaaggagaaga---------caCCACTAAACATTGAT------------------ACACTTTTTTAGCGCGTGGAAAGGGGTAAGATAAGGCATGAGAACTT--GAGGTTCGAgcacaaaaaaag-caaagagtCATTCATAAAGTGGATACATGACAATAGATCCTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  184463 159 +   227596 agaaaaaaaat-aaatgaaaatgtcaaaatgtcaTCCATTTTCC-----------AGGAAGG---------AACCACAAAACATTGAT------------------ACTT--TTGT----CTT-G----GGGTGAGATAAGGCATGTGAGCTC--Gcgg------caaaaaaagagcaaaagagACATTTATAACGCGGATACATGACAG---CTTTTCT
i caeJap4.Scaffold17545 I 311 I 689

a score=6056.000000
s ce10.chrX             3186130 53 + 17718866 GC--AAGGAACACTGG-CGTACACCC-------TCGAATTTTCATTTTCATGTTTGTTTGTTT------
s cb4.chrX              8246814 55 + 21540570 GCCCCGAGAGCACAAATCGAACACACTTcaatttc----ttttgtt----tctttgttttttc------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   363402 48 -  4500979 TT-----GAGTACATA-CGAACACAc-----tctc----tcttgttttcatttttgttttttt------
i caeRem4.Crem_Contig0  C 0 I 82
s caeSp111.Scaffold629   464195 52 - 33334924 TT-----GAGGTCTTA-TGAACACAC-------TC----ttgtgttttcattttcgtgtttttctgTGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1561282 46 +  4147112 TT-----AAGAACAAA-CGAACAcac-------tc----ttttctttcaacttttgtttgttt------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I

a score=409.000000
s ce10.chrX             3186183 3 + 17718866 TTT
s cb4.chrX              8246869 3 + 21540570 tgt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   464247 3 - 33334924 TTT
i caeSp111.Scaffold629  C 0 I 105
e caePb3.Scfld02_0      1561328 0 +  4147112 C
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeRem4.Crem_Contig0   363450 82 -  4500979 I

a score=-1146.000000
s ce10.chrX             3186186 17 + 17718866 TTTGTTTCGTTGCAACA
s cb4.chrX              8246872 17 + 21540570 tttggccagttttgaca
i cb4.chrX              C 0 I 85
s caePb3.Scfld02_0      1561328  3 +  4147112 -------------gaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464250 105 - 33334924 I
e caeRem4.Crem_Contig0   363450 82 -  4500979 I

a score=1567.000000
s ce10.chrX             3186203 38 + 17718866 ATTTTGGTTTTGGTTTTGGTTTAACATTTTTCAAGTGA
s caePb3.Scfld02_0      1561331 38 +  4147112 gTGTTATCTTCAGTTTgggttcaatttttttcaaataa
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8246889 85 + 21540570 I
e caeSp111.Scaffold629   464250 105 - 33334924 I
e caeRem4.Crem_Contig0   363450 82 -  4500979 I

a score=0.000000
s ce10.chrX             3186241 486 + 17718866 CTTTACGTGATGTTAACTTTTTTAAATCTAAAAGTTCTACAAGTAATTGAGCCCAACCAATCTGATTCGATAATTTAAAGTTTTTGAAAATGTCTTCAAATTTAATGATGATTTGTAATCTTGAAAACTAAAGCTTCAGTTAGCTCAAATCTGCATATTTGACAGCTCTCGATGCGCCGGAAACTATTTTTTTTATTCAAATATAGTTGGAGGTTTAGTCGAACAATAGTTACTATAGtccaaaatgcctgatattataataaaacaacacttcaaaaatttatagatttttaaaaatgtttggtcaaagttttggcaaattgccTCATATCATAAAAAAGTGGAATATACGGAAAGGTTAGAAAAAAAAAGGAAAATTGATATTAACAAATTTTAGATCATGTTTTGTCAGTCAAAAAAATTGTTGTAAAATTAAAAACTCATACTATAAATTCGGTCTGTTAGCAGAACTGAAAACTGAAAAGC
e caePb3.Scfld02_0      1561369  50 +  4147112 I
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8246889  85 + 21540570 I
e caeSp111.Scaffold629   464250 105 - 33334924 I
e caeRem4.Crem_Contig0   363450  82 -  4500979 I

a score=662.000000
s ce10.chrX             3186727 34 + 17718866 AAACGGAAT-TGTGGCGTATTTTAAAAGT-----------AATATA
s caeRem4.Crem_Contig0   363532 46 -  4500979 AAACGGAACCTATGACGTGGTTAAAAAGTTAGcttcaggaaaaaaa
i caeRem4.Crem_Contig0  I 82 C 0
e caePb3.Scfld02_0      1561369 50 +  4147112 I
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8246889 85 + 21540570 I
e caeSp111.Scaffold629   464250 105 - 33334924 I

a score=447.000000
s ce10.chrX             3186761 6 + 17718866 TTTGGT-
s caeRem4.Crem_Contig0   363578 6 -  4500979 -atggaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   464355 6 - 33334924 tttgga-
i caeSp111.Scaffold629  I 105 C 0
s caePb3.Scfld02_0      1561419 6 +  4147112 tttgga-
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8246889 85 + 21540570 I

a score=143246.000000
s ce10.chrX             3186767 552 + 17718866  
s cb4.chrX              8246974 529 + 21540570  
i cb4.chrX              I 85 C 0
s caeRem4.Crem_Contig0   363584 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   464361 553 - 33334924  
i caeSp111.Scaffold629  C 0 I 329
s caePb3.Scfld02_0      1561425 568 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I

a score=-2245.000000
s ce10.chrX             3187319 37 + 17718866 -------------------GAGTTTC--------CAGCTGCCGGTAG-TTTTACAGCAGCATATG-----
s cb4.chrX              8247503 56 + 21540570 aagattttttggtAAGAAGAATTTTCAGG-----CAGCTGCCAA----TTGTACGGAAGCACATG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   364140 37 -  4500979 GGGTTT----------------------------CAGCTGTTCAAAGTTCCTATGGAAGCATATG-----
i caeRem4.Crem_Contig0  C 0 I 273
s caePb3.Scfld02_0      1561993 47 +  4147112 ------------------gaaatttcaaagtctTCAGCTGCTT-----TTTTCGCGAAGCACGAGCTACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I

a score=-1406.000000
s ce10.chrX             3187356  8 + 17718866 ---------GTAGTACT---------------
s cb4.chrX              8247559 32 + 21540570 GTGACACGGATAGAGTCACTAACCACGTCATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1562040  8 +  4147112 ---------GTAGTGCT---------------
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=625.000000
s ce10.chrX             3187364 84 + 17718866 ACTTAGTACAAG---ATTCCATGTTTTTTCTAGAACAGTTGGT-GAAAGAATAGATGACCTCAAACCAAAAAAAAAGACGTCAAAGTC
s cb4.chrX              8247591 83 + 21540570 TCTTAACAGAAGTTTGTTTCAATTTGACTCTAG-----TTAGTAGAAAGCAAATAGAGCCTGTAAGACATGAAAAAGTAGTAAAAATC
i cb4.chrX              C 0 I 149
e caePb3.Scfld02_0      1562048 56 +  4147112 I
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=0.000000
s ce10.chrX             3187448 5 + 17718866 TTCTA
e caePb3.Scfld02_0      1562048 56 +  4147112 I
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8247674 149 + 21540570 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=82.000000
s ce10.chrX             3187453 162 + 17718866 CTCTTTA-----CATCATGAACAGGCATTAATTAAGGAAGTA-------AGTTTAAGATATGAA-AAAATTTGCAGTACATGCTTTTGACTAAAGAAAAAAAAATTATTTTTTGAAAACTGGTTATGATTTAAACAAGTAGAACAAAAAGTCATTTTCAACAAATAATTCCAGCA
s caePb3.Scfld02_0      1562104 150 +  4147112 CCCTTTGGTAAGCGTAACTAACTGGTACTAATTCAGAAAAGAGCATTGTAGTACAGGACACGAATACCAGCTGCA----ATGGTATTGGATAAAG---------------TTAGACGTGtacttttgaatgaaatcaGTA-----AGAAGTTGATCTCAA-Atttggactcaaaa
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e cb4.chrX              8247674 149 + 21540570 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=-10982.000000
s ce10.chrX             3187615 219 + 17718866 ---------AAAATTATATAAATTTCTGttaatagt---------------ggaatagcgccagttaaa--atattgttaaaacaagatcaaaatga------cccaaaaagtaatttattttgatgaaacaaactgattattttttca-------------aatt------ttgga---------------aagaatctggtcaaataatatata-----------------tggta------aaatactaaaattttataaaattta--------------aacct--ttttagaaatttagagcatacatagttgcgtcat
s cb4.chrX              8247823 291 + 21540570 agtttcatagacatttcacg------tgttagtggttttctccccttcgttgaaata-----aataaat--aaataaataaaataaa---taaataa------------aactcATTTACCGTTCCATCACTAATGGAAGCTCTTCCAATCCTTTCAATGtgaattcaattatctcagttcttgaGAAAGATATGAATTTtgccaactgaaaaattattcacCACAATATCATcggcattttttcagttatgaaatttttgatatctttcacaggaattatGAAGCTTGAAATTGACGGTTTAGATAA-----GTTTCTATCAT
i cb4.chrX              I 149 C 0
s caePb3.Scfld02_0      1562254 204 +  4147112 ---------aaaattagaca------aGCCAA-------------------Gaaatg-----aatcgattcaaattGGCGCAATAGAATCTTAATAAAGTTATCTC---AACTTCTTTATGGTCTCAAAACTGAC--AAGGTTTAACAA-------------AAACAGGCTGCTCCA---------------CTGTATTTCACTAATCGATGAACT------------------GGAA-----TCAatactaaaa------ataatttt--------------agctT--CACTAACCTTCTAGGCAAT---CATTTGTGTGAT
i caePb3.Scfld02_0      C 0 I 105
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=-845.000000
s ce10.chrX             3187834 127 + 17718866 aaatactcacagtgtttagattcaaaaaaaaattaaaattgaaatttgttgaaaaaaattttttggccgacttccaaaatgtggcaaaaaat----gagaaattgcaactgggagtaaatTTGT-----------------------------------------------------TTCAAAC
s cb4.chrX              8248114 164 + 21540570 AAGGAAT-ACAAT------AATCGaaaacaaagtaaacctgaaa---gtatgaaaaaat----------agtttctataaatcataaaaaattaaaGGGAGATCGAAAACGTGTACAATTCTATATTGATAAACCTAAAGCAAAGCAAAAATAAACgcttttcttcatttcctgacattcaaat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1562458 105 +  4147112 I
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=-6496.000000
s ce10.chrX             3187961 129 + 17718866 -------ATTATTTGAAAA-----TATTTATTATGTATTTTTAACTATAGAAATAGCCGTTT-TAATCTCCCTAAAAAACTTA---------------------AATTCGACACATAATTTCAAATTGAAATCCTCAAAAAAGAATTATCCTAATGTGACTTT------
s cb4.chrX              8248278 154 + 21540570 tctacaaaatatttga--------ttttttttctaaattttttcatagGGAAGTCGTCATTTGTGAATTGACCACTAGGCTTGTAGAGGTAATTACGGCTAAGAAATATAACA---ATtctcattttaaattttt--aataaaaatttactACAGGTATCTCAAACT--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1562563 122 +  4147112 -------AATATTCGAGAGCGAcgtaattttgagaaattttgt---------------aTCCATCAACTA---ATTGGActtg--------ataaaaatcaaaaaacaaagca--------cACTTTGGAGT------ATAGGTGTGTTTTGTAACTAACTACAACTTT
i caePb3.Scfld02_0      I 105 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeSp111.Scaffold629   464914 329 - 33334924 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=-4244.000000
s ce10.chrX             3188090 20 + 17718866 TCTACATTTCAAAATC----------GTGG---
s cb4.chrX              8248432 20 + 21540570 -------------ACTACAAATCCAATCGATCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   465243 21 - 33334924 Tccagttttgaaaact------------gatca
i caeSp111.Scaffold629  I 329 C 0
s caePb3.Scfld02_0      1562685 15 +  4147112 --------TGATACCT----------TCGATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I
e caeRem4.Crem_Contig0   364177 273 -  4500979 I

a score=13749.000000
s ce10.chrX             3188110 52 + 17718866 GATGAACAAAGCAC------------AAGATGACCGACCGAACTATTG---CACTTCACATTCATT-------C
s cb4.chrX              8248452 69 + 21540570 GATGAACAAACCACATTACCACTAACAAACTAACTGACCAAACTATTGCACCACTTCA-----ATCGTGTGCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   364450 56 -  4500979 GAGGAACAAACCAC---ACTGTGGGGGCACAAGCTGACCGAACTATTG---CACTTCA-----ATC-------C
i caeRem4.Crem_Contig0  I 273 C 0
s caeSp111.Scaffold629   465264 55 - 33334924 GATGAACAAACCAC---ACAATTGG-AACCAAACTGTCCGAACTATTG---CACTTCA-----CCA-------A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1562700 54 +  4147112 GATGAACAAACCAC---AACATCCG-AGACCAGCTCAACGAACTATTG---CAC-TCA-----ATG-------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  184622 689 +   227596 I

a score=159733.000000
s ce10.chrX             3188162 338 + 17718866 AGGTCCTCGAAAAGTCTCAAAAATTATTTTTAAACAT--CACTGGAAACACCCTAC-----CGATTTT--------------TACCAGCTCCGAGGT------AAGTAAACTCACA-AAA-GTTCTG---CCTATCACTTTTTTTTTTGTGG--------GAAACAGCAACAGCAAACAA--------------------------------AAAATCGCAACTTGTACCGTG--------------------------CAAAAAAA-------------------AAAATG----AAAAGAACAAAAGGGTATATGAAAGGTA--AGAGGCTCA-----------CTTAA-TGAATGGGTCGATATCTCTGTATTTGGTGGT---TTATTTGATTAGTGGATTACGGACGG-------CTCTAATTACCCTTTGATCG------------GGTC--GAGAC-----GCACGGGAAATTGCGATTGAA---GATGGTGATAACTA
s cb4.chrX              8248521 375 + 21540570 ACGCTCTCGAATagtctcaaaaactattttaaaaCATCACACTGGAAACATC-------CACGATTTGTTG----------CTTCTcgtcggggggggggggcgagTAAACGTAAA-AAC-TTCTTGCCTCCTATCACTTTTTTGTTCGTGG--------GAAACAGTAACGGTAAACAATAATGCT------AAGACAgatagc-agaaaaaaaaacgcaacttgctttttttctcg--------------------------------------------acAGAAAATG----GAAC-----AAAAACGGAATGACAGG-------------------------TCAT-TGGAGGGGTCGATCTCTCTGTATTTGGGTCTTTAATGTTTGATTAGCGGATTACGGACGG-------CTCTAATTACCCTTTGATCG-------CGATGAGAGAAGAGACATAAGGCACGGGAAATTGTGATGGGG---AATGGTGATAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   364506 415 -  4500979 AGACCCTCgaaaagtctcaaaaactattttaaaacat--CACTGGAAACACCCTGCTCTCccgatttctt------------ttcttcccgGGGTGA------GAgtaaactcaaa-aactttcttg---cctaTCAC---TTCGGTCGTGG--------GAAACAGTAACAGTAAACAA-AATGCT-----AAAGACAGGagtcgagaaaaaaaaacgcaactTGCTTCCTGTCCTGTaggaaacaaagagaaaag--caggaaaaaaggga---------atcgaaagtg----aaacacacaaaaaacgGTATGACAGGCT--AGATATCTAACC-------TTCCGT-TTGAGGGGTCGATCTCTCTGTATTTGGGTCTTTTATGTTTGATTAGTGGATTACGGACGG-------CTCTAATTACCCTTTGATCG-------AGA--AGGCGAGAGAC-----GCACGGGAAATTGTGATGGGG---AATGGTGATAACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   465319 418 - 33334924 AGGCTCTCGAAAAgtctcaaaaactattttaaaaCAT--CACTGGAAACACCCAGCTCTCGTTATTTT--------------ATCATCCCGGGGAGT------GAGTAAACTAAAGAAAC-TTCTTG---CCTATCAT---TTT-GTCGTGG--------GAAACAGTAATAGTAAACAAAAACgtt----------gagaaaacgagaagaaaccCCGCAACTTGCTTCCTGTTCTTTTggaaacaaagagaaaaaagcaagaaaagctgggaaga----gagggagaatgcaaagaaacaaaaaaaaacggtaTGACAGGCA--AGATATTCAACCTCTCTCCTTCCGT-TTGAGGGGTCGATCTCTC--TATTAGGGTGT---ATGTTTGATTAGTGGATTACGGACGG-------CTCTAATTACCCTTTGATCG-------C-A--AGAT--GAAAC-----GCACGGGAAATTGTGATGGCG---AATGGTGATAACTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1562754 395 +  4147112 AAGCCCTcgaaaagcttcaaaaactattttaaaaCAT--CACTGGAAACACCCTACTCTTGCGATTT---------------------CCCGGGAGT------GAGTAAACGTAAG-AAC-TTCTTG---CCTATCAC---TTTGGCCGTGG--------GAAACAGTAATAGTCaacaaa-------------------aaagccaaaagaaaaatcgcAACTTGCTTCCTGTCCTGTagaaagcggagagaaacaa-caagaaaaaatagaaaaa----ggtgaagaagg---aggagaaaaaaaaaacgatatgACAGGCAAGAGATATTGAACC--------TCCGT-TTGAGGGGTCGATCTCTCTGTATTTGGGTTT---ATATTTGATTAGTGGATTACGGACGG-------CTCTAATTACCCTTTGATCG-------CAA--AGAC--GAAAC-----GCACGGGAAATTGTGATGGGG---AATGGTGATAACAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  185311 437 +   227596 AGGCTTTTGAATGTCTTGGAAAACTATTTTAAAGCAT--CACT---AACTGC------TCACAATCAACGGAGCAAAAAACTCGCCTCTCGGAGGGC------GAGTAAACG---------CCTTTG---TCTATCAC--GTTTTGTCGtgggaaagaaagaaacagTGACagtaaacaaaaaagttgcggaAAGGGGAAGAAGCAAGAAGG------GCAACTTGGTTTTGTTGCTATCCCAATATCAGcaaaag---caaaataaaagcaaaagaacagaacaaaaaacg----acaaaaatgaaaagatagaagagaaaaa--gGATATTCACCG--------TCTATATATCAAGGTCGATAGCTCTGTATTTGAGTAA---ATGTTTGATTAGCGGATTATAAACGGCTCTCCTCTCTAATTACCCTTTTATCGGTCGGTGCAA--AGAAg-gaaat--------tgagaaattgtGATGATGCTAGATAGTGATAGCTG
i caeJap4.Scaffold17545 I 689 I 97

a score=-3033.000000
s ce10.chrX             3188500  95 + 17718866 ACCCAGAC----GGGTG---GTT--------------------------TGA---------------------------ATTCTTCCAATTTCCTCCCTGTTCATTGGCTCAATCTGTGAGGTCTTCTCACCA---AATTTTTGAATGCTACTGTAG-----------------------------------T
s cb4.chrX              8248896 161 + 21540570 TCCCAGACT---GTGTGTGCGTAAATCGAAGGAAAATGAGCGAAATGAGTGAGCAGCTTTGATTCTTctgcaaactcaaaaattt--aatttcctgAGTGCCCG-------AA------AGATTTTGGCCTCT---ATTTTTCTAGAGCTACAGTAG-----------CTACTTTTTTCAGCCACCTATACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   364921 153 -  4500979 -CCCAGAC----GGGGGTCTGTTAATCGGAGAAA---------------TGAGTGGTCTCAATTCTGCAAGAATTccaatttcttccaatttcctgAGTGCTCACA---TCAA------ACACTCAAAAC-------CTTTTC----GTTACAGTAGtagaactttttcttttcttttcggtACCTCTGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   465737 137 - 33334924 -CCCAGACGGGAGGGTGTG-GTCTATCGCAGAAA---------------TGGAAGAACtcaattctc-----------atttcatccAATTTCCTGAGTGCTCACA---TCAA------AAGCTCGCCTCT-----TTTTGTC----ACTACAGTAG----------CAAACTTTTTCCACCTCCCATAAAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1563149 142 +  4147112 -CCCAGACG---GGGTGTG-GTTAATCGGAGAAA---------------TGAAAGGACC--------------------GCTCTTCCAATTTCCTGAGTGCCCAAAAGCTCAA------AACCCTTCCCACTTGTATTTTGTT----GTTACAGTAG-AATCTCTCTAAAACTATTTCCACCACCTATAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  185748  97 +   227596 I

a score=92559.000000
s ce10.chrX             3188595 576 + 17718866  
s cb4.chrX              8249057 540 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   365074 536 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   465874 544 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1563291 528 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  185845 574 +   227596  
i caeJap4.Scaffold17545 I 97 I 1206

a score=-1013.000000
s ce10.chrX             3189171 32 + 17718866 ATCGCAATCTGTAGTGTTT----------AAAGTTTCGCAAC
s cb4.chrX              8249597 35 + 21540570 CATCCAAGCCCTTGTATAG-------GCAACAATTTTGTAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   365610 22 -  4500979 ----CAATCCTTACTata----------------tttgcaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   466418 37 - 33334924 ----AAAGCC-TTGTATAGCAGAATAAAGAGTATTTCgtaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1563819 30 +  4147112 ----CAAGCC-TGCTATGG-------AATAATATTTCGTAAC
i caePb3.Scfld02_0      C 0 I 294
e caeJap4.Scaffold17545  186419 1206 +   227596 I

a score=-1285.000000
s ce10.chrX             3189203 4 + 17718866 AAAA-----
s cb4.chrX              8249632 7 + 21540570 --AATTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   365632 4 -  4500979 --aa---tg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   466455 4 - 33334924 aaaa-----
i caeSp111.Scaffold629  C 0 I 229
e caePb3.Scfld02_0      1563849 294 +  4147112 I
e caeJap4.Scaffold17545  186419 1206 +   227596 I

a score=-79.000000
s ce10.chrX             3189207 28 + 17718866 TATACTGTTGCCTAGATGAGAAAAGTAG
s cb4.chrX              8249639 24 + 21540570 TACAGTGATTAGTTA----AGGAACTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   365636 28 -  4500979 aatattatttCGTAATAGTAAAACGTAG
i caeRem4.Crem_Contig0  C 0 I 246
e caePb3.Scfld02_0      1563849 294 +  4147112 I
e caeJap4.Scaffold17545  186419 1206 +   227596 I
e caeSp111.Scaffold629   466459 229 - 33334924 I

a score=382.000000
s ce10.chrX             3189235 4 + 17718866 TTGG
s cb4.chrX              8249663 4 + 21540570 TTGG
i cb4.chrX              C 0 I 438
e caePb3.Scfld02_0      1563849 294 +  4147112 I
e caeJap4.Scaffold17545  186419 1206 +   227596 I
e caeSp111.Scaffold629   466459 229 - 33334924 I
e caeRem4.Crem_Contig0   365664 246 -  4500979 I

a score=0.000000
s ce10.chrX             3189239 844 + 17718866  
e caePb3.Scfld02_0      1563849 294 +  4147112 I
e caeJap4.Scaffold17545  186419 1206 +   227596 I
e cb4.chrX              8249667 438 + 21540570 I
e caeSp111.Scaffold629   466459 229 - 33334924 I
e caeRem4.Crem_Contig0   365664 246 -  4500979 I

a score=2150.000000
s ce10.chrX             3190083 11 + 17718866 CTTGAGTTAGA
s caeRem4.Crem_Contig0   365910 11 -  4500979 CTTgagataaa
i caeRem4.Crem_Contig0  I 246 C 0
s caeSp111.Scaffold629   466688 11 - 33334924 Cttgaaataaa
i caeSp111.Scaffold629  I 229 C 0
e caePb3.Scfld02_0      1563849 294 +  4147112 I
e caeJap4.Scaffold17545  186419 1206 +   227596 I
e cb4.chrX              8249667 438 + 21540570 I

a score=14749.000000
s ce10.chrX             3190094 82 + 17718866 TTGCA------------AAAAAAAATAAATTGAAGGTTGACCGATGATGTGAAACTCAAGGATGTCTCT--TTTTGG-CGCATTCAAACAAC---CTCAC-------
s caeRem4.Crem_Contig0   365921 97 -  4500979 ttgaaaaaaaaaactagggGAAAACCTATTCGAAGGTCA---TTTGATATGAAACTCAAGGATGCCTTTTCTTTCAATCTCATTCGCGcattgaattcaa-------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   466699 98 - 33334924 ttggaaaaaaaca-tcggaaaaatccaatttgaAGGTCG---TATGATATGAAACTCAAGGATGTCTCT--ATCCAATCTCATTCGCgcatt---ttctattgaaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564143 83 +  4147112 ttgga------------gaaaaaacgaattcaaaGGTCG---TATGATATGAAACTCAAGGATGTCTCT--ATCCAATCTCATTCGcgcatt---ttttgtt----c
i caePb3.Scfld02_0      I 294 C 0
e caeJap4.Scaffold17545  186419 1206 +   227596 I
e cb4.chrX              8249667 438 + 21540570 I

a score=28303.000000
s ce10.chrX             3190176 68 + 17718866 AAAAAAAACA-------GAAGGTTGTCTAAATTCACTAACGAGACAGAA------GAACGATTGGGTGATAGATGAA-GAAA
s cb4.chrX              8250105 59 + 21540570 --aaagaagaaa-----agaggttAT-TTCAC-------CGAGAAC--------AAGGGGATTGAGTGATAGATGAATGAAA
i cb4.chrX              I 438 C 0
s caeRem4.Crem_Contig0   366020 73 -  4500979 --aaaaaacaaggTACTAAAGGTTGT-TGCATTCATTCACGAGAATAGA-----AGGAGGATTGAGTGATAGATGAA-GAAA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   466797 80 - 33334924 aaaaaaaacgaggTACTAAAGGTTGT-TGCATTCATttacaaagaagaaaaggggagaGGATTGAGTGATAGATGAA-GAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564226 76 +  4147112 gaaaaaaacgagGTACTAAAGGTTGT-TGCATTCATTTACGAGACAGAA----GGGGAGGATTGAGTGATAGATGAA-GAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  186419 1206 +   227596 I

a score=30640.000000
s ce10.chrX             3190244 36 + 17718866 CAGTGGTCG-----------CACCCGCAGCGGGACACCACCGTGGCG
s cb4.chrX              8250164 47 + 21540570 CAGTGGTCACCGTCGTCGTCCGCACACAGCGGGACACCACCGTGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   366093 38 -  4500979 CAGTGGCCACCG--------CAC-CTCAGCTGGACACCACCGTGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   466877 35 - 33334924 CAGTGGTCG-----------CAC-CGCAGCAGGACACCACCGTGTCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564302 35 +  4147112 CAGTGGTCG-----------CAC-CGCAGCAGGACACCACCGTGTCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  187625 36 +   227596 caGGTGTTG-----------CAAACCCAGCGGGACACCACCGTGTCG
i caeJap4.Scaffold17545 I 1206 I 15

a score=5776.000000
s ce10.chrX             3190280 13 + 17718866 GAC-GAATGATTTA---
s cb4.chrX              8250211 17 + 21540570 GACGGAATGATTTAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   366131 16 -  4500979 GCC-GAATGATTTAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   466912 13 - 33334924 CCT-GAATGATTTA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564337 16 +  4147112 GCC-GAATGATTTAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  187661 15 +   227596 I

a score=120797.000000
s ce10.chrX             3190293 180 + 17718866 GGT------GGTGCACTTAAAGACCCCCAGCAGCAGCCGCCT---------------TTCTAAAGTCCCTGATGCAATTCATCATCTTATTACACTTACTCGGCAGTCATCCAGCATTTAACCCACTACTA--CCACTCTCAAATGTTATCCATTATTTTATAATGCTACATTTATC-AAGTTGAGCGTTTTACAAT-CTGTGGG
s cb4.chrX              8250228 188 + 21540570 GGTGTGGTTGGTGCACTTAAAGACCCC--GCAACAG-------------GCACGTTCTTCAAAGTCCTTTGATGCAATTCATCATCTTATTACACTTACTCGGCAGTCATCCAGCATTTAACCC-CTGCCAACTAGCCCCCGAATGTTATCCATTATTTTATAACGCTACATTTATC-AAGTTGAGCACTTAACAATCCTGCGGG
i cb4.chrX              C 0 I 349
s caeRem4.Crem_Contig0   366147 187 -  4500979 GGT-------GTGCACTTAAAGACCCC---TAGCAGCCCCCctcccttctctctctctcttaagTCCCCTGATGCAATTCATCATCTTATTACACTTACTCGGCAGTCATCCAGCATTTAACCCACTACTA------CTCTCAATGTTATCCATTATTTTATAACGAGACATTTATC-AACTTGAGCGGTTTACAAT-CTGTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   466925 171 - 33334924 GGT------GGTGCACTTAAAGACC-----CAACAGCCCCCC----------TTTGCTACTAAGTCCCCTGATGCAATTCATCATCTTATTACACTTACTCGGCAGTCATCCAGCATTTAACCCACTC------------TCAATGTTATCCATTATTTTATAATGCTACATTTATCAAAGCTGAACGTTTTACAAT-CTGCGGG
i caeSp111.Scaffold629  C 0 I 207
s caePb3.Scfld02_0      1564353 170 +  4147112 GGT------GGTGCACTTAAAGACC-----CAACAGCCTCCC-------TCTTTTGCTACTAAGTCCCCTGATGCAATTCATCATCTTATTACACTTACTC---------CAAGCATTTAACCCACTACCA------CTGCCAATGTTATCCATTATTTTATAACGCTACATTTATC-AAGTTTAACGTTTTACAAT-CTATACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  187676 153 +   227596 GGT------GATGCACTTAAAGACA-----CGACAGAAGGCC----------------TCCGAGGTCCCTGATGCTATTCATCATCTTATTACACTTACTCGGCAGTCATCCAGCACTTAATTCTCTTTCT------CCACCCTTCTCAATCATTATTTTATAATGCAAGATTCATC-AAGTTGGAG------------------
i caeJap4.Scaffold17545 I 15 C 0

a score=-1140.000000
s ce10.chrX             3190473 58 + 17718866 TTAAGTGTGCGGGAAGTGGGTGCAGCAAGTGGATT-AGCAACTGATGTGATTAATTGGT
s caeRem4.Crem_Contig0   366334 41 -  4500979 ----------GGGAAGTGCTTTGA-------GGTT-GACAATTGTCATGACTATTATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1564523 33 +  4147112 ----------GAGGAGTGAGttaa------------gaaaatt----tgagaagtttct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  187829 47 +   227596 ATAAA-----AGAGAGTGTATGTA-------TATGAAGCAACTGTTGTTATTAATTGAT
i caeJap4.Scaffold17545 C 0 I 236
e cb4.chrX              8250416 349 + 21540570 I
e caeSp111.Scaffold629   467096 207 - 33334924 I

a score=-553.000000
s ce10.chrX             3190531 12 + 17718866 TCAGTGAAAATT----------
s caeRem4.Crem_Contig0   366375 18 -  4500979 ----TGAGACCCAGTGAAAACT
i caeRem4.Crem_Contig0  C 0 I 278
s caePb3.Scfld02_0      1564556  8 +  4147112 ----TGAGAACT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  187876 236 +   227596 I
e cb4.chrX              8250416 349 + 21540570 I
e caeSp111.Scaffold629   467096 207 - 33334924 I

a score=-4256.000000
s ce10.chrX             3190543 395 + 17718866 CCGAAAACTTTGGAAACTTTTTGTGTTGattttttttaaataaaaaataCCAAATTTTAGCACACTCAGGCGGCGAATTAGGCTTAGGCCTACCCTAGGTTTAGGCTCAGACCT-ACGGCCGACCCCTTCAAATACAAGATAACTTTAAAAGTGGAAAACTGAAAAAATATAGATTAAAAATTTTTCTCGTACATTTCCCAAGTCCCTGAAATTTGCTAAAAGTGGattttttaaaaaataaattcaaaaaaaaaatCTGTCAGATATCCCAAATTAAAGTTGGGTAAACTTAGTAATTTTGCCTATAAATTGTCGGTTTTATTACACGTGCTCTATAAATTTTGCCTAAAAATGTCGTTTTCCATAAAAATTTTCCAAATCTGGGACATCTGTTG
s caePb3.Scfld02_0      1564564 224 +  4147112 GTGAAAG-----------------------------------AAACACATGAGATTTTG-------------------------------------AAGTCTAGATTCGATCCTTAAGGTAAGttgttttgagtttcagaaaaaatta------------tgaaaaaa------------------------cgTTAGCTCAGTCATTCAGAATC-------------------ATAACTGAG--CGAAAGAGAGATCGG--------ACCACCTTCATGCTAG-----CTCAGAGTTTTGGCTTTTATATTGAC---------------------TGAGGAACActcgaaaatatc---------aaaaaagtgcTTGACCTCGTAAAACTGTCA
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold17545  187876 236 +   227596 I
e cb4.chrX              8250416 349 + 21540570 I
e caeSp111.Scaffold629   467096 207 - 33334924 I
e caeRem4.Crem_Contig0   366393 278 -  4500979 I

a score=0.000000
s ce10.chrX             3190938 28 + 17718866 AGGTTTAAAAAAATGTTAGAAAAAACTG
e caePb3.Scfld02_0      1564788 11 +  4147112 I
e caeJap4.Scaffold17545  187876 236 +   227596 I
e cb4.chrX              8250416 349 + 21540570 I
e caeSp111.Scaffold629   467096 207 - 33334924 I
e caeRem4.Crem_Contig0   366393 278 -  4500979 I

a score=-558.000000
s ce10.chrX             3190966 242 + 17718866 AGAAAATGTTGATTGTATGTATACAATATCAAACTTAATGTTTTGAAAACCTACAAATTTCACCTAAAAACAATATTTTTCTATATAACCTGGAAACACTGACAAAAAGAACTGCAACTTTGGGACTATACTACTGGAAAACATCTGAAAAAAGCTAGGTTTTTGGGTTATAAAACTCAATAT-AACGATTTAGAACATTACAAATTTAGCCAAAATAAATAATGAACAAAA---AAATCTTGTAC
s caePb3.Scfld02_0      1564799 160 +  4147112 AAAACACGTTGATT-------CATCCTCGTGAccttaattttcagaaaactgctACATTTCAC------------GTTTccttggttttttcaaaacacaaaaaatgagaa-----------------------------------gaaaaaa-----------------caagagtcAAGATGAATGAGCAAGAATAC---------------GGTATATGGTTCACAAAAGCAATATCTGggac
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold17545  187876 236 +   227596 I
e cb4.chrX              8250416 349 + 21540570 I
e caeSp111.Scaffold629   467096 207 - 33334924 I
e caeRem4.Crem_Contig0   366393 278 -  4500979 I

a score=-543.000000
s ce10.chrX             3191208  9 + 17718866 -ATGTTCTTT
s caeSp111.Scaffold629   467303  9 - 33334924 -atgaccact
i caeSp111.Scaffold629  I 207 C 0
s caePb3.Scfld02_0      1564959 10 +  4147112 aaaaacaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  187876 236 +   227596 I
e cb4.chrX              8250416 349 + 21540570 I
e caeRem4.Crem_Contig0   366393 278 -  4500979 I

a score=526.000000
s ce10.chrX             3191217 26 + 17718866 TGAAAAT----ATAGTTGCGTTTTCAACA--C
s cb4.chrX              8250765 30 + 21540570 tgaaaattggcataTTTA-GATTTTCGCAAC-
i cb4.chrX              I 349 C 0
s caeSp111.Scaffold629   467312 25 - 33334924 tgaaaat----atgtttttggttttggcA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564969 23 +  4147112 --aaaat----gtgTTTACGGCTCCTGGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  187876 236 +   227596 I
e caeRem4.Crem_Contig0   366393 278 -  4500979 I

a score=-20555.000000
s ce10.chrX             3191243 208 + 17718866 AAG---------AAAGTT-T--------------TGTTTATGATTTCTCTATTTTTC-----------TTGAACCACAAATTAGTTGAAATTTCATAT-------GTGATTACAGGCCTTCTCACTTGTTACAGCTCTGTCAA-----------------ATGACCGTTGCCACAGACCACACAAA---GTTTGTGGAAATCTAATTCC-----AGTTAATTTCCA--AGACCACTCACCTTCCA-------TGTCAAA-------AAGCGGGCGATGGGGCCAAAGTGTG
s cb4.chrX              8250795 209 + 21540570 -AATCCGAGTCAACAACTCT--------------TATTTATGACTCCTTTTATTCGTGGCTAAAGAGCCTGAACCACAAACTGGCTGAAATT---AATGTACCACTTGACCACAGAGTT-------------TTCTCGCCTAA-----------------------------ACAAACAATATTTA-----GCCAAAGAAAACAATCGG-----GGCTAATTTAAATGAGA-TGCCCACTCTTTATTTCTTCGGTCACACGGTGGGAA---------GGGaccaaaaag--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   366671 188 -  4500979 -AA--------AACAACT-T--------------TGTTTATGACACCCTCTCAGAATGGTG-------CTGAACCACTAATTAGTTGCAATA---TAT-------CTGATTACAGTATTCATCA-----TAACGCTAGTTAAA-------------------AACCG-----ACAAACCATAAACA---AGGCGAAATAAACCAACCAAATGATAGGTAATTTTGA--AAA-GGCACACCTTTTG-----------ACA-------AA---------GGGACCAAAATgtg
i caeRem4.Crem_Contig0  I 278 C 0
s caeSp111.Scaffold629   467337 191 - 33334924 ------------ACAATC-TGAAAGGCGAGTTTATATTCATGACTCTAT----------------------GATCACAAATTAGTTGCAGTT---TAC-------AGAATTATAGTCGC-------------CACTCTTCCAAATTAGATCCTGGAGTC---AACTG-----TCAA--CAAAACTGTTTGGAACTCCGAAAATAGTT--------Gttaatttctatttga-tGCACACCTTCAA-------CGTCAAA-------AA---------GGGTCCAAAATGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1564992 166 +  4147112 ------------ATAGTC-T--------------------TGAACCT----------------------------CCTAATTGGCTCGAATT---TTC-------AGGATTACTGTCAC-------------TACTATaacaa---aactcataaatttcaaaactg-----tcaa--caaaaata---gtgacacaaaacaaaatttg-----agttaATTTCTGTTTGA-CACACACCGTCAA-------TGTCAAA-------AAG--------GGGCCCAAAATGTg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  187876 236 +   227596 I

a score=155889.000000
s ce10.chrX             3191451 204 + 17718866 TGT--AAGGGAAAAACGGAAA----AAGAGAAAGAAAAG-CAAATCGTAGTTGTGT--TGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGG-CTCTCGTCAACTAAGTGATGTGCTCAGCAGATATACTACGTCG-------TCGGACAAG-----TT--GAACATTCTCTACGT--CTTCTCTTCACGCGCACCTT-CTC---------ATTCCCCGTTTTAGA--
s cb4.chrX              8251004 196 + 21540570 --------------------g----aagaaaaagaatag-cAAATCGTAGTTGTGTTGTGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGGCCTCTCGTCAACTAAGTGATGTGCTCAGCAGATATACTACGTCGTCGCCTTTCGAACAAG-----TTTCGAACATTTTCTGTCA--CTTT--------CTC-CCTT-CTC--TCACATGTACTACCTTTTTAGA--
i cb4.chrX              C 0 I 125
s caeRem4.Crem_Contig0   366859 180 -  4500979 aa--------------aggaa----aagagaaagaaaag-caAATCGTAGTTGTGT--TGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGG-CTCTCGTCAACTAAGTGATGTGCTCAGCAGATATACTACGTCG-------TCGAGCAAG-----TT--GAACATTCTCTGCTC--CTCT--------CGCACCTT-CTC-------------ATCTTTTTAGA--
i caeRem4.Crem_Contig0  C 0 I 122
s caeSp111.Scaffold629   467528 188 - 33334924 TG--------------AGGGGGgctaaagaaaagaaacg-caAATCGTAGTTGTGT--TGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGG-CTCTCGTCAACTAAGTGATGTGCTCAGCAGATATACTACGTCG-------TCGAACAAG-----TT--GAACATTCTCTGCTCCTCTCT--------CACACCTTACTA------------TCCTTTTTTAGA--
i caeSp111.Scaffold629  C 0 I 168
s caePb3.Scfld02_0      1565158 180 +  4147112 ta--------------ggaag------agaaaagaaaagccaAATCGTAGTTGTGT--TGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGG-CTCTCGTCAACTAAGTGATGTGCTCAGCAGATACACTACGTCG-------TCGAAcaag-----tt--gaacattttctacTC--CTCT--------CGCacctt-ctc------------tcctttttcaga--
i caePb3.Scfld02_0      C 0 I 157
s caeJap4.Scaffold17545  188112 213 +   227596 --tggaaaggaaaggaaaaga----aaggaaaagaaaag-caaaTCGTAGTTGTGT--TGTTGGTTGTTCAGTTAGGAGATGGTAATCAAATTGACGCGAGAGAGG-CTCTCGCCAACTAAGTGATGTGCTCAGCAGATATACTAAGTTG-------GAGAACAAGTCCGTTT--CGCCGTGCCGTGCCG-TTTCT--------CGCACCTT-TTTAGTCGCTgcgtttcttttcttttatt
i caeJap4.Scaffold17545 I 236 C 0

a score=-17724.000000
s ce10.chrX             3191655 33 + 17718866 -----ATCCTTTCGG------AAAACTGAAAGCAGTGA-----------------GTGTCG---
s cb4.chrX              8251325 38 + 21540570 -----aacttctgaa------aaaaaggaaaacagaaaGT------------CCTGACTCG---
i cb4.chrX              I 125 C 0
s caeRem4.Crem_Contig0   367161 38 -  4500979 -----aacaacaggg------aaaaatggaaacaaaaact------------tgggaaaga---
i caeRem4.Crem_Contig0  I 122 C 0
s caeSp111.Scaffold629   467884 12 - 33334924 ---------------------------------AGAAAC----------------GAATCG---
i caeSp111.Scaffold629  I 168 C 0
s caePb3.Scfld02_0      1565495 34 +  4147112 -----GTACTTTTGG------GAGTTGTAAGAAAGAAAT----------------GGatcg---
i caePb3.Scfld02_0      I 157 C 0
s caeJap4.Scaffold17545  188325 64 +   227596 ttctttttttcttggcTAGTTATGGTGAAAAATAGATACTAGATTTCAATAGCAGGGAGCACTG
i caeJap4.Scaffold17545 C 0 I 61

a score=-4635.000000
s ce10.chrX             3191688 40 + 17718866 GTGTC------------------------------TCATGTGGC---TCGAGGTGTTGCGCATCAATAATAGA
s cb4.chrX              8251363 47 + 21540570 AATTC-----------------CTATAAGTGAGACTCATGTGGTCCGCAAA---------TAAAGAAAATATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   367199 61 -  4500979 atatctcaagaaaaaaaagaaactgaatgTGAGTATTACATGGT---TAGA---------TAACGGTGATATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   467896 38 - 33334924 A-----------------------GAAACTGAGCCTCATGTGGT---TCTA---------CATTGGAAATATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1565529 42 +  4147112 aaaac-----------------ggaaaaatgag--TCACGTGTT---TCAA---------ATTTAGCAATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  188389 61 +   227596 I

a score=89598.000000
s ce10.chrX             3191728 406 + 17718866  
s cb4.chrX              8251410 499 + 21540570  
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   367260 409 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 639
s caeSp111.Scaffold629   467934 375 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1565571 375 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  188450 524 +   227596  
i caeJap4.Scaffold17545 I 61 C 0

a score=-7136.000000
s ce10.chrX             3192134 33 + 17718866 TTAAATCAATTA----AAAATTTGAATTCAGATGTTT
s cb4.chrX              8251917 35 + 21540570 taAAATCAAAGGCTCACAACTGCAAAATTAAGTTT--
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold629   468309 33 - 33334924 cagcATCAGGAG----agattttggaattgaattttt
i caeSp111.Scaffold629  C 0 I 626
s caePb3.Scfld02_0      1565946  8 +  4147112 -----------------------------GAATCTTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  188974 34 +   227596 TGGAATGGATGATGACACAAAATCAAACAAAGTT---
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   367669 639 -  4500979 I

a score=-3090.000000
s ce10.chrX             3192167 58 + 17718866 TGCA-----------------GAAATGAAGAAATG----AAAATGGGGCTGA---AGTTGAA----AGTTTAATGTGTTAAAGTTG------
s cb4.chrX              8251952 69 + 21540570 TGCATGAACCCTAGAAAGTTTGAAACG--AGAATGATGTAAAATATCGttg----agttgaa----aattt------tgaagata-------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1565955 53 +  4147112 TGCA-----------------GAAATG--GTAAAG----GAAATCTTGTTG----ATTGGAATCttagttt------ttaaaattg------
i caePb3.Scfld02_0      I 1 I 943
s caeJap4.Scaffold17545  189008 62 +   227596 GGCAGAG--------------GAAATG--GAAATG----GGAACGATGTTTAGACACTGGAA----AAATC------AGAAGAGCAAGCAAg
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   468342 626 - 33334924 I
e caeRem4.Crem_Contig0   367669 639 -  4500979 I

a score=749.000000
s ce10.chrX             3192225 6 + 17718866 TTTGTA
s cb4.chrX              8252021 6 + 21540570 tgTATA
i cb4.chrX              C 0 I 1816
s caeJap4.Scaffold17545  189070 6 +   227596 cttgta
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1566008 943 +  4147112 I
e caeSp111.Scaffold629   468342 626 - 33334924 I
e caeRem4.Crem_Contig0   367669 639 -  4500979 I

a score=636.000000
s ce10.chrX             3192231 40 + 17718866 CGGAAGAAATA-GTTAGAAAATTT-------GATAAATAGTGAATTGG
s caeJap4.Scaffold17545  189076 48 +   227596 gaaaaaaaatacttttggaaatttatttttaaaaaaatagggaaatag
i caeJap4.Scaffold17545 C 0 I 2041
e caePb3.Scfld02_0      1566008 943 +  4147112 I
e cb4.chrX              8252027 1816 + 21540570 I
e caeSp111.Scaffold629   468342 626 - 33334924 I
e caeRem4.Crem_Contig0   367669 639 -  4500979 I

a score=0.000000
s ce10.chrX             3192271 1596 + 17718866  
e caePb3.Scfld02_0      1566008  943 +  4147112 I
e caeJap4.Scaffold17545  189124 2041 +   227596 I
e cb4.chrX              8252027 1816 + 21540570 I
e caeSp111.Scaffold629   468342  626 - 33334924 I
e caeRem4.Crem_Contig0   367669  639 -  4500979 I

a score=141.000000
s ce10.chrX             3193867 20 + 17718866 AATACAAAAGTTGAGCAATT
s caeSp111.Scaffold629   468968 14 - 33334924 AATACAGGAG------AGTG
i caeSp111.Scaffold629  I 626 C 0
e caePb3.Scfld02_0      1566008 943 +  4147112 I
e caeJap4.Scaffold17545  189124 2041 +   227596 I
e cb4.chrX              8252027 1816 + 21540570 I
e caeRem4.Crem_Contig0   367669 639 -  4500979 I

a score=2287.000000
s ce10.chrX             3193887 9 + 17718866 GAGCATGGC
s caeRem4.Crem_Contig0   368308 9 -  4500979 GAGCTCGAC
i caeRem4.Crem_Contig0  I 639 C 0
s caeSp111.Scaffold629   468982 9 - 33334924 GTGCGCAAc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1566951 9 +  4147112 GAGCATAAC
i caePb3.Scfld02_0      I 943 C 0
e caeJap4.Scaffold17545  189124 2041 +   227596 I
e cb4.chrX              8252027 1816 + 21540570 I

a score=2910.000000
s ce10.chrX             3193896 3 + 17718866 GTC
s cb4.chrX              8253843 3 + 21540570 gtc
i cb4.chrX              I 1816 C 0
s caeRem4.Crem_Contig0   368317 3 -  4500979 gtc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   468991 3 - 33334924 gtc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1566960 3 +  4147112 GTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  189124 2041 +   227596 I

a score=85550.000000
s ce10.chrX             3193899 155 + 17718866 AAAAATCAGAAAAAGGAAAAAAATAATGTGAAGGAT--GTGCAGAGCAG------CATCAAAAGAAGCATATGCGATGTGACAAGTGATATGTC-----TCG---GC-AAAATTGCCTCCGAATTATTTTATGGAGATTGCCAGCTTCTAGTGCT-----------------CTCCGACGAGAATAAAG
s cb4.chrX              8253846 160 + 21540570 aaaaatcaaaaga------atg-----cCGAAGATG--GCTCAA---------------AAGAGAAGCATATGCGATGTGACAAGTGATACGTCCCGCGCACGCGGC-AAAATTGCCTCCGAattattttctgaagattGCTTTCTTCAAGTGCTCTCCATCGCACAATCTCCTCCGTCGAGAATAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   368320 149 -  4500979 aaaaatcaagaga------atAAGAATTTGAGGGAT--GCACAGCGAGA------CATCAAGAGAAGCATATGCGATGTGACAAGTGATACGTC-----CAC---GC-AAAATTGCCTCCGAATTATTTTCTGAAGATTGCCTTCTTCAAGTGCT-----------------CTCCGTCGAGAATAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   468994 142 - 33334924 aaaaatcagaagg-----gAGAAGAATGTGAAGGAT---------GAGC------CATCAAAAGAAGCATATGCGATGTGACAAGTGATACTTC-----GCC---GC-AAAATTGCTTCCGAATTATTTTATAGAGATTGCTTTCTTCAAGTGCT-----------------CTCCGTCGAGAATAGA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1566963 150 +  4147112 AAAAATCCgaagg-------aaaaaatgtgaagGATGCGCACAAGGAGC------CGTCAAATAGAGCATATGCGATGTGACAAGTGATACGAC-----CAC---GC-AAAATTGCCTCCAAATTATTTTATGGAGATTGCCTTTTTCAAGTGCT-----------------CTCCGTCGAGAATAAAA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17545  191165 137 +   227596 aaaaatcaaaaga------agaagaagaagaggcaA--ATATGGAGCACGAATATGATCCAAGAAAGCATATGCGATGTGACAAGTGATATGTC-----CGC---GAGAAAATAGTCTGTGAATTATTTCCTAGCGG-CACTCTCTTCAG----------------------CTCC-------------
i caeJap4.Scaffold17545 I 2041 C 0

a score=-2738.000000
s ce10.chrX             3194054 16 + 17718866 TGGCGCGGGAAGGGAG
s cb4.chrX              8254006  2 + 21540570 --------------AG
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   368469  2 -  4500979 --------------AG
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   469136  3 - 33334924 -------------GAA
i caeSp111.Scaffold629  C 0 I 7
s caeJap4.Scaffold17545  191302  1 +   227596 ---------------G
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1567113 10 +  4147112 I

a score=246726.000000
s ce10.chrX             3194070 410 + 17718866  
s cb4.chrX              8254015 447 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   368479 414 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   469146 404 - 33334924  
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1567123 409 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17545  191303 426 +   227596  
i caeJap4.Scaffold17545 C 0 I 1979

a score=18371.000000
s ce10.chrX             3194480 70 + 17718866 GACAAAATGACGCTTCAACACTGAGAA-AATAAACAGATGATCCATT-----TTGT-------------ATAAAGATAAAACAATGAGA
s cb4.chrX              8254462 62 + 21540570 GACGAAATGACGTTTT---------AAGAATAAATAGA-GCCGTGTT-----TTGTC------------ATGAGAAGCAAAGAATGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   368893 81 -  4500979 AACAAAATGACGTTTTAATACTGGGAAGAATAAACAGA-GCTTGTTT-----TCGTc--tccaaaaaatataaaaataaaacgaagCGA
i caeRem4.Crem_Contig0  C 0 I 797
s caeSp111.Scaffold629   469550 75 - 33334924 GACAAAATGACGTTTTAATACTGGGAAAAATAAACATAGGCCTATTT-----TCTTGAAtccaga----acaaaaaacaaagaa-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1567532 79 +  4147112 GACAAAATGACGTTTTAATACTGGGAAAAATAAACAGA-GCCTATTTTGCCATTGTCAGGGTAga----gcaaaaacgaaaaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  191729 1979 +   227596 I

a score=-377.000000
s ce10.chrX             3194550  8 + 17718866 ---G-----AAATCTG
s cb4.chrX              8254524  8 + 21540570 ---A-----TAATatg
i cb4.chrX              C 0 I 726
s caeSp111.Scaffold629   469625 11 - 33334924 taaa-----TCATCTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1567611 16 +  4147112 caaagaatttcaTCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e caeRem4.Crem_Contig0   368974 797 -  4500979 I

a score=984.000000
s ce10.chrX             3194558 6 + 17718866 GCAATA
s caeSp111.Scaffold629   469636 6 - 33334924 AAAATA
i caeSp111.Scaffold629  C 0 I 1829
s caePb3.Scfld02_0      1567627 6 +  4147112 AAAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e cb4.chrX              8254532 726 + 21540570 I
e caeRem4.Crem_Contig0   368974 797 -  4500979 I

a score=332.000000
s ce10.chrX             3194564 43 + 17718866 GTTGATAAAATAAAC-ATTCAGTTAAAAAGAGCCTACGTGGTTG
s caePb3.Scfld02_0      1567633 44 +  4147112 GTATTCAGAGTACGTGATGAAGGGAAAGAAAGACTGTATGATTG
i caePb3.Scfld02_0      C 0 I 872
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e cb4.chrX              8254532 726 + 21540570 I
e caeSp111.Scaffold629   469642 1829 - 33334924 I
e caeRem4.Crem_Contig0   368974 797 -  4500979 I

a score=0.000000
s ce10.chrX             3194607 1161 + 17718866  
e caePb3.Scfld02_0      1567677  872 +  4147112 I
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e cb4.chrX              8254532  726 + 21540570 I
e caeSp111.Scaffold629   469642 1829 - 33334924 I
e caeRem4.Crem_Contig0   368974  797 -  4500979 I

a score=395.000000
s ce10.chrX             3195768 27 + 17718866 GAAACTGCTGAAAATATTGTAATTTGC
s caeSp111.Scaffold629   471471 22 - 33334924 gaatctactaaaaatc-----atttca
i caeSp111.Scaffold629  I 1829 C 0
e caePb3.Scfld02_0      1567677 872 +  4147112 I
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e cb4.chrX              8254532 726 + 21540570 I
e caeRem4.Crem_Contig0   368974 797 -  4500979 I

a score=-71.000000
s ce10.chrX             3195795 28 + 17718866 AAAAGTAAGTAGCAAAAAAAA-TAGATTT
s cb4.chrX              8255258 29 + 21540570 aaaaataaataaataagaaaactatggtt
i cb4.chrX              I 726 I 4
s caeSp111.Scaffold629   471493 20 - 33334924 -aaaactaacaaaacagatta--------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1567677 872 +  4147112 I
e caeJap4.Scaffold17545  191729 1979 +   227596 I
e caeRem4.Crem_Contig0   368974 797 -  4500979 I

a score=4697.000000
s ce10.chrX             3195823 10 + 17718866 TTTGAAGTCG
s cb4.chrX              8255291 10 + 21540570 tttgaaggag
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   369771 10 -  4500979 TTTGAAgggg
i caeRem4.Crem_Contig0  I 797 C 0
s caeSp111.Scaffold629   471513  7 - 33334924 ---gaagtcg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1568549 10 +  4147112 ttagaagtcg
i caePb3.Scfld02_0      I 872 C 0
e caeJap4.Scaffold17545  191729 1979 +   227596 I

a score=68867.000000
s ce10.chrX             3195833  94 + 17718866 AAA----AAATGAAAAGCT----TGCGCATTTGGTTGTTTC-TGCTATTTTCTCACATATC----------GAGTGAAATCTGAGAA-ACATCAAATCTTCTGGTTTTTGCTTC
s cb4.chrX              8255301 105 + 21540570 aaaaaataaacggaaaaGTGCTCCGCGCATTTGGTTGTTTC-ATCTATTTTCTCACATATCCTC-------TCGTGAAATCTGAGAA-ACATCAAATCTGCTGGTTTTCTTTTC
i cb4.chrX              C 0 I 702
s caeRem4.Crem_Contig0   369781  94 -  4500979 aaaa---aaacg--agagtGCT-TGCGCATTTGGATGTTTC-ATCCGTTTTCTCACATATCCTA-------GAGTGAAATCTGAGAA-ACATCAAAT---CTGGTTCccctt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   471520  97 - 33334924 aaa----aaaggaaaagaa----ggcgCATTTCGTTGTTTC-GTCCACTTTCTCACATATCCTC-------GAGTGAAATCTGAGAA-ACATCAAATCTGCTGGTTCCCTCTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1568559 100 +  4147112 aaa----aaatgaaaaagcccT-GGCACATTTGGTTGTTTC-GTCCATTTTCTCACATATCCTC-------GAGTGAAATCTGAGAA-ACATCAAATCTGCTGGTTCCCTCTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  193708 107 +   227596 aaa----aaatgaaaaagaccT---CGTCGTTGGTTGTTTCAATCAGTTTTCTCACATATTCTCGTCAGAAGGGTGAAATCTGAGAATACATCAAATCCACTGGGCCCTTCCCT
i caeJap4.Scaffold17545 I 1979 C 0

a score=-228.000000
s ce10.chrX             3195927 51 + 17718866 TAAATTTTGCAACGTCT-----------TGGTGCCCTTCTT-------TTT-------TAAAACTATATACGTTTG
s caeRem4.Crem_Contig0   369875 74 -  4500979 caatttttgcagtgcTC--TCTTTCTtatgtttcttcatttccagttgtttaaaaaattacagcTAAAGAAAGTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   471617 57 - 33334924 -GGTTTTTGCAAGGTCC--TCCTCCGTCTTTTTTCCCTATA-------TTT---------CAGTTATATACATTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1568659 61 +  4147112 -GAAATCTGCAAGGtcccttcttccttctcttcctcctttt-------ttt-------tctagttatatacatttg
i caePb3.Scfld02_0      C 0 I 650
s caeJap4.Scaffold17545  193815 39 +   227596 -----------------------CGAtaacttttttgcttt-------ttc-------ctcAGTTATATACGgatt
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8255406 702 + 21540570 I

a score=-20943.000000
s ce10.chrX             3195978 103 + 17718866 CTCAT--------------------------------------------------CTTTTTTG------TCCTCCTAAAAATGTTTTTTTTTTC------------------TCAAATGCA------------------AAA--------------------AGAAAAAATTAT--TATTGGCAAAAGAA--GTTGACAATTGAATTGGAAAAATTGGG
s caeRem4.Crem_Contig0   369949 217 -  4500979 --CAGTGAAGGTGATAAGATGGAGAGAAGATTCGATGTTCTTTATTTTGAgcactattttttgaaatcattctATCAAATATGTTCTTCATGCATTTCATTTATGGAATTTTCACAGTGCAAAATCTTTTGATTTGtttaaaagttttcgtttTACATTTCAAGACAGGGTTATTGTCTCATTAAAACAGCATTCATAAAATAAGTTTGAACTACTTGG
i caeRem4.Crem_Contig0  C 0 I 75
s caeSp111.Scaffold629   471674 100 - 33334924 -------------------------------------------------------ATT-----------TTCCATTAGAAATGTTCATCTTGGA------------------CACAGAACA-------TTGATTACGGAAAATGTTTATG------------AGATAGG--TAT--TTTAATCAAAAGAA-------GGAGTACATGTGAATAA-----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  193854  91 +   227596 ----------------------------------atcttctttttttttgttttgtttttttgtt----ttttgttaaaaagaATGTTCATCTG------------------TGCACAATA-----------------------------------------ATTATTGAGTAC--TGATATCGAATGAG-----------------------------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1568720 650 +  4147112 I
e cb4.chrX              8255406 702 + 21540570 I

a score=-363.000000
s ce10.chrX             3196081 28 + 17718866 AATTGTGATGCGAATATGACAAATTTAT
s caeSp111.Scaffold629   471774 24 - 33334924 AGTTTTGATCGGAAGATGTCATAT----
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  193945 23 +   227596 --ATGGAATGAGGGGTTGAAAAATT---
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1568720 650 +  4147112 I
e cb4.chrX              8255406 702 + 21540570 I
e caeRem4.Crem_Contig0   370166 75 -  4500979 I

a score=-3623.000000
s ce10.chrX             3196109 71 + 17718866 TGAAAATATATTTTTTTGAGGTTTAAGTA-TAAAT-----------TCTGCCGTTACAGATATG----------ATTTTCGGAAAGTAGTGAT------
s caeRem4.Crem_Contig0   370241 86 -  4500979 tgaaaat-tatttgacaGAGAACGAAGTTATAAGTTTTGAGATTAATCTGACAGAGCAgatatgaatgaaaagaattgTCAGAAAAG------------
i caeRem4.Crem_Contig0  I 75 C 0
s caeSp111.Scaffold629   471798 48 - 33334924 -GAAAAT-----------------------TGAGT----------ATCTGTCAGTACAGATATG-----GGAGAGTttacagaaaag------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  193968 74 +   227596 --AACAT-GAGCTTTCTAACGGTGCGG---TGGGT---GCGATGTACATGCAGATGCAGATATG----------ATTGGCacaaaaa------ggagaa
i caeJap4.Scaffold17545 C 0 I 56
e caePb3.Scfld02_0      1568720 650 +  4147112 I
e cb4.chrX              8255406 702 + 21540570 I

a score=-2927.000000
s ce10.chrX             3196180 54 + 17718866 CATTTATGTCAA-----TATGGAGTTCAGATCGATTAGTTCACTATTGGTAT-----TGAGGTG-
s caeRem4.Crem_Contig0   370327 45 -  4500979 ---TAATGTCAGACAgataaatgtttttaaaa-aaaaattg----------------tgaggtga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   471846 56 - 33334924 ----aaaatcag-----tAAGAGTTTTAAGGGCAACAATTGAAGAGTAATACTGCAATGATGGGa
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1568720 650 +  4147112 I
e caeJap4.Scaffold17545  194042 56 +   227596 I
e cb4.chrX              8255406 702 + 21540570 I

a score=-4316.000000
s ce10.chrX             3196234 34 + 17718866 ATTACAATTGATTAAAATACATGGGCCAATGTTA
s caeRem4.Crem_Contig0   370372 18 -  4500979 agtaaaaaggagacaaag----------------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   471902 32 - 33334924 agaacgaagaagaaagaaagatagG--AGTGTTG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  194098 18 +   227596 atttcaatt----------------tcaatttta
i caeJap4.Scaffold17545 I 56 C 0
e caePb3.Scfld02_0      1568720 650 +  4147112 I
e cb4.chrX              8255406 702 + 21540570 I

a score=-4202.000000
s ce10.chrX             3196268 28 + 17718866 ------TGAGATGATCAGACAAGTAAATCAA------------TAA
s caeRem4.Crem_Contig0   370392 19 -  4500979 ------aaaaataattgaacaa---------------------aaa
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold629   471934 30 - 33334924 ------AATGAtgtaaagaaaagaaatgtaa----------TTTGA
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1569370 19 +  4147112 ------TGAGATGGTTAGAAAA---------------------TGA
i caePb3.Scfld02_0      I 650 I 1
s caeJap4.Scaffold17545  194116 46 +   227596 tgaggtataaaagaaaagaaaagacacagaaaaagTATATATATAA
i caeJap4.Scaffold17545 C 0 I 1
e cb4.chrX              8255406 702 + 21540570 I

a score=168017.000000
s ce10.chrX             3196296 213 + 17718866 TTACAAGAAACGGGAGACAAGTTGTGAAATTTTGGTGTCAAGTAGAGATTCGAGATAACTAGTTGGGTAAAATTGAATTTCGGCGAGGAGGAGTAGCAGTTTTCCAAATCGGGAAGGCGATGAGTCAAGTTTCAGACAGCATTGTTGAAGCAGGCAAATGCATTGGTCTAGTTGCTCTTCAAATTGATATTGAGAGTCTTCAGTTGCTGGAAA
s cb4.chrX              8256108 213 + 21540570 TTACAAGAATCGCGAGacaagaaaagaaattttagaatcgaGAAGTGATTCAAGGTTACTGGTTTGATagaaatgaatttcagaaaggagaagaagaagttttcCAAATCTCGAAGGCGACGAGTCAAGTTTCAAACAGCATTGTTGGAGGAGGCAAATGCATTGGTCGAGTTGTTCTTCGAATTGGTACTCGGAATCATCGTTGGctgaaat
i cb4.chrX              I 702 I 1
s caeRem4.Crem_Contig0   370412 213 -  4500979 TTATAAGAAACGGGTCACAAGATAAGATATTTTAGTATCGAGAAGTGATTCCAAATAGCCGGTTTGATAGAAATGGATCTCAGAAAGAAGGAGCAGAAGTTTTCCAAAACGGGATGGGGATGAATCGAGTTTCTGGCAACACTGTTGAAGGAGACAGATGCATTGATCGAGTTGGTCTTCGAATTGGTAGTGAGACTCTtcattggctgaaaa
i caeRem4.Crem_Contig0  I 1 I 1
s caeSp111.Scaffold629   471965 213 - 33334924 TCATATCAGTTCAGAAACAATGTGAGGAAGTTTTGTTTCAAGGAGAATTTCGATATTATTTGTTGGATAGAAGTGGACCTCTGCAAGTAGAAGCAGAAGTTTTCCAAACCGGGATGGGGATGAATCAAGTTTAAGGCAGCATTGTTGAAGAAGACAGATGCATTGATCGAGCTGTTCTTCAAATTGATAATGCATTTCCTCGTtagctgaaaa
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1569390 213 +  4147112 TCACAAAAATTCGGATAGAATGTGAGGGAGTTTAGATTCAAGAAGAAGTTCGATATCATTAGTTGGATAGAATTGAAGTTCGGCAAGAAGGAGGAGTAGTTTTCCAAATCGGGATGGTGAGGAATCGAGTTTCAAGCAACATTGTTGAAGAAGGCATATGCACTGATCAAGGTGTTCTTCGAATTGATATTGGTGATCTTCGttagctgaaaa
i caePb3.Scfld02_0      I 1 I 936
s caeJap4.Scaffold17545  194163 213 +   227596 TTACAAGAAACGAGCGACAAGTTGAGAGATTTTAATATCAAGGAGAGATTCAATATTGTTAGTGGGATAGTATTGGATTTCAgcgagaagaaggagaagttTTCCAAAGCGGCAAGGTGAGGAATCGAGCTTGAGACAGCATTGCTGGAGGAGACAGATGCATTGGTCAAGTTGGTCTTCAAATTGGAATTGAGAGTCTTCAGATGCTGAAAA
i caeJap4.Scaffold17545 I 1 C 0

a score=-829.000000
s ce10.chrX             3196509 1 + 17718866 -T
s caeSp111.Scaffold629   472178 1 - 33334924 -t
i caeSp111.Scaffold629  C 0 I 163
s caeJap4.Scaffold17545  194376 1 +   227596 G-
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1569603 936 +  4147112 I
e cb4.chrX              8256321 1 + 21540570 I
e caeRem4.Crem_Contig0   370625 1 -  4500979 I

a score=-5282.000000
s ce10.chrX             3196510 56 + 17718866 ------TGG---------TTTTA---TTTGCAGATGGTTTTATTTTTTTCACAAGTTCTTCACAAATTGGAATT
s cb4.chrX              8256322 60 + 21540570 ------ataaaatttcccctttaaatttttaa--------ttttttttgaaatgttttctcGCAAATCCCGATT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   370626 33 -  4500979 ------tta---------cttta---tTTGTA--------CGATGTATGGATTGatttt---------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold17545  194377 57 +   227596 TAATGATGA---------ATGTAGGTTGTTAA--------TAACTTTTGAACTATTCCGTTCCAATTAtgaatt
i caeJap4.Scaffold17545 C 0 I 9
e caePb3.Scfld02_0      1569603 936 +  4147112 I
e caeSp111.Scaffold629   472179 163 - 33334924 I

a score=-928.000000
s ce10.chrX             3196566 25 + 17718866 ATAATACAAATGTTGTGAAGCAACC
s cb4.chrX              8256382 19 + 21540570 ATACTTCTAGTGT------GCAACC
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   370659  3 -  4500979 ----------tgt------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1569603 936 +  4147112 I
e caeJap4.Scaffold17545  194434  9 +   227596 I
e caeSp111.Scaffold629   472179 163 - 33334924 I

a score=-5000.000000
s ce10.chrX             3196591 380 + 17718866 CCCAACTAATAGTTTGACTAATCAAATTTAGCAAATTCACCTATTTTACTTGCCAATATTGATACATTTACACTGGTCTAAACCTTTTTGTTTTAACACTGTGATAACTTTTTTCTCGTTCACTTTTTTTAGTGCACGGACtagggcttccatgagaagcaggcgaggtttcaaggcctgacgcctgcctccaaccctcacctcaaaccggtcttttgtctcgtttctgcactatggcaaaaaatcaatggctcggtatttacaccacatagtgcgaaaagtggtttttttcgacgcggccgacacttttcgggttccgcgccgcaatattcagaaggcacgAGGTGGACGTTTTGTCGCCTACCTGGAAGCCCTAGCGA
s caeRem4.Crem_Contig0   370662 203 -  4500979 ------------------------------------------attctgattGC-------------------------------------TTCGAGCTGTGTG----CTTATGTATGATTTGTGCTGTTCTCTGAACGGGTCC---CaaccattaaaaaaatttgaggacCCAAGGA-------------------------TCAAAA-------------------TACATT-----------TCAATGTCAC---ATTCAAAATAAGTACTGTAAaagatt-tctttttaaaaatgtttgaagatCTTCTG-------------------AGAACGC------------TTCCTTTGGTTTCATGCCATCCCTAGAG-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1569603 936 +  4147112 I
e caeJap4.Scaffold17545  194434   9 +   227596 I
e cb4.chrX              8256401   2 + 21540570 I
e caeSp111.Scaffold629   472179 163 - 33334924 I

a score=-7543.000000
s ce10.chrX             3196971 186 + 17718866 GAAGATGTGAAAATGGTATAACTCA---------------CTTTTGAAAAAATTATAACTAAAA---AGTGTTTTTTTAACTCGA----TTGCAATAATCTCATATCT--TTTGAAATTCCAGTATTTTTAGTGTGAGGAAACCAGCTTTATTTAAATAATGTTTGCCCTTTTACGTAAAAACTTGTTTGATTCATTCAAATTCGGAAAA-------
s caeRem4.Crem_Contig0   370865 121 -  4500979 -----TTCCACA-TGATTTTATACG------------------------GAGTTAAAATAAAAGCActacattttctcattttgaaaacgcgCAA------TCTGTTCAACTTTCACTTCCCTTATGA----------CAAacttattgaatttca--------------------------------------------------aaagtaatAGA
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      1570539 157 +  4147112 gaaaattcgaaagtgaTATCATTCACACCCACTTATCAGTCTATTATATGACTTAGAACAAAACCTCAGTGTTTTATGTATCTCGAACTGTG-AA------CATATCC--CTTGTAATTCAATTATCC----------GAACCCcactttgtttta-------------ttttaca--------------------------aCAGAAAGCAACC--
i caePb3.Scfld02_0      I 936 C 0
e caeJap4.Scaffold17545  194434   9 +   227596 I
e cb4.chrX              8256401   2 + 21540570 I
e caeSp111.Scaffold629   472179 163 - 33334924 I

a score=-3000.000000
s ce10.chrX             3197157 1 + 17718866 --G
s cb4.chrX              8256403 1 + 21540570 -G-
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   370991 1 -  4500979 -g-
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      1570696 1 +  4147112 T--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  194434 9 +   227596 I
e caeSp111.Scaffold629   472179 163 - 33334924 I

a score=17307.000000
s ce10.chrX             3197158 61 + 17718866 TCATATCTTTTTTCAATGCTT-TATGTAA-------CCGATCC-CTTTTACATTTGACCCATggttttag
s cb4.chrX              8256404 55 + 21540570 TAAAATCATTCGTAAAAACTTCTATGTAA-------CCGATCC-TTTTTACATTTGACCCAAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   370992 63 -  4500979 taaatctcttttttcgaatgtaTGTGTAA-------CCGATCCATTTTTACATTTGACCCATGGATTCCA
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   472342 61 - 33334924 caaatctcattttgaaaagtt-tgtGTAA-------CTGATCC-TCTTTACATTTGACACaaggtttgaa
i caeSp111.Scaffold629  I 163 C 0
s caePb3.Scfld02_0      1570697 61 +  4147112 TCAATCTTTTCCCCCATATTT-CATGAAA-------CCGATCC-CTATTACATTTGACCcatcgtttcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  194443 60 +   227596 tccttttttttttaaataaaa-tatgTAAATTCAATCCGATTC---------TATGAACCGCATGTTTGA
i caeJap4.Scaffold17545 I 9 C 0

a score=-15116.000000
s ce10.chrX             3197219 44 + 17718866 gttttaggttttaggttt---------taagttttaggA---TCCGTGC-TCCGGTG
s cb4.chrX              8256459  9 + 21540570 -------------------------------------AG---TACCCAT--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   472403 20 - 33334924 ----------------------------aa-----agga---TGTACAT-TGCATTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1570758 24 +  4147112 ----------------------------aa-----aagaagttttacATGTACACTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  194503 34 +   227596 TTCATAGGTCATAGTTTTGGCTTTGAGCAA-----ACAA------------------
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   371055 13 -  4500979 I

a score=459155.000000
s ce10.chrX             3197263 715 + 17718866  
s cb4.chrX              8256468 741 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   371068 692 -  4500979  
i caeRem4.Crem_Contig0  I 13 I 39
s caeSp111.Scaffold629   472423 685 - 33334924  
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0      1570782 682 +  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17545  194537 723 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-896.000000
s ce10.chrX             3197978 8 + 17718866 --TAAGTATA
s cb4.chrX              8257211 8 + 21540570 --CAAGtgta
i cb4.chrX              I 2 I 28
s caeSp111.Scaffold629   473116 7 - 33334924 ---AATTATA
i caeSp111.Scaffold629  I 8 C 0
s caePb3.Scfld02_0      1571472 8 +  4147112 --CAATTATG
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17545  195260 8 +   227596 TCAAAACA--
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   371760 39 -  4500979 I

a score=-4438.000000
s ce10.chrX             3197986 30 + 17718866 ----TTTGTTTTAGCGCTGTTACCCTATTTCACC
s caeSp111.Scaffold629   473123 18 - 33334924 ----GATAATTTGAAA---------GAACTC---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1571480 21 +  4147112 ----GATGAGCTGTTG---------GAATTCAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  195268 33 +   227596 GCTATACAACATGAAAGTTTTCCCCAAATTCAG-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8257219 28 + 21540570 I
e caeRem4.Crem_Contig0   371760 39 -  4500979 I

a score=945.000000
s ce10.chrX             3198016 4 + 17718866 CTCA
s caeRem4.Crem_Contig0   371799 4 -  4500979 TTTA
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold629   473141 4 - 33334924 TTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1571501 4 +  4147112 TTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  195301 1 +   227596 ---A
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8257219 28 + 21540570 I

a score=316973.000000
s ce10.chrX             3198020 430 + 17718866 CCTTCTCATCTTCTGTTTTCCCGTCACTAGCACTAGATGGGGAATCTTCCCTTTTCATCATATTAGAATGTCCCATTATTGCAGACACGGCACCTGCATACTCTCTGAAAAAGTTTTGTGGATCCATGTCAAGGGCGGGTCGGATTGTGGCGGTATTTCTCGGTTGTCTCTCATTTTGTACTGCTG-AAAGTTGGAAATCATTTTTCCATTGTTTCTTCTGAA----ATT-CT-------TACCATCTTTATTCATTCCCTTGTTAAGGCATTTTTTAAGTCTACATGCTTGACATTGATTTCTATGTGCTTTGTCTACAACGCAGTTGCCGGTTCCTGCCTGGCATCTATAAATCAGCCGCCTTCTTACTGATCGCTTGAAGAAGCCCGAACATCCATTGCATGCCAAGATACCTTTAAGACGAAA----TAAATATA---TTTTGA-TA
s cb4.chrX              8257247 421 + 21540570 CCTTCTCATCTTCAGTTTTACCATCACTGGCACTGGATGGTGAATCTTCCCGTTTAATCATTGTTGAGTGTCCCATAATTGCGGACACAGCACCTGCATACTCCCGAAAGAAGTTCTGAGGATCCATATCGATTGCTGGTCGGATAGTTGCCGTATTTCTAGGTTGCCTCTCATTTTGTACAGCTG-AAAC-TCGACACGATTCTCCAG----ATATATGAAA----TTCACG-----AATACCATCTTTGTTCATCCCCTTGTTCAAGCACTTCTTGAGACGGCAAGCTTGACATTGGTTGCGATGGGCTTTATCGACAACACAGTTTCCGGTTCCTGCTTGGCATCGATAGATCAGTCGTCTTCTGACTGATCGCTTGAAGAATCCAGAACACCCATTGCAGGCAAGAATGCCTTAAA-----------TAACCAAA---ATGTCt-cg
i cb4.chrX              I 28 I 17
s caeRem4.Crem_Contig0   371803 423 -  4500979 CCTTTTCATCTTCAGTTTTCCCATCACTAGCACTAGAAGGAGAGTCTTCTCTCTTAATCATAGTAGAGTGTCCCATTATTGCAGAAACAGCACCTGCGtactctctgaaaaaattctgaggATCCATATCTAACGCCGGTCGAATTGTCGCAGTATTTCTTGGTTGTCGTTCATTTTGAACAgctg-aaaagttgagaaaactATCATA----ATCCGTCGAA----TGT-CT-----GATACCATCTTTGTTCATTCCTTTGTTGAGACATTTCTTGAGACGACACGCTTGACATTGATTACGATGAGCCTTATCAACAATACAGTTCCCAGTACCCGCTTGACATCGGTAAATAAGTCGTCTTCTGACTGATCGTTTGAAAAAACCCGAACATCCGTTGCACGCAAGTAttcctaaaa---t-------tgaaaaag---atttcTATG
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold629   473145 427 - 33334924 CCTTCTCATCTTCCGTTTTTCCATCACTCGCACTAGACGGTGAATCTTCCCGCTTAATCATGTTAGAATGCCCCATGATAGCAGAAACAGCTCCTGCGTACTCTCTGAAGAAGTTTTGAGGATCCATATCGATCGCAGGTCTTATTGTTGCTGTATTTCTTGGTTGCCTCTCATTTTGAACagctg-aaat-agaaaataatttgt----------ttctttATTAGTCT-CTTATGATATACCATCTTTGTTCATTCCTTTGttcaaacactttttcagcCGACAGGCTTGACATTGGTTACGGTGTGCTTTGTCGACGACACAGTTTCCAGTACCTGCCTGACACCGATAAATCAAACGCCTTCGAACAGATCTTTTAAAGAAGCCGGAACATCCGTTACAAGCCAGAATACCTTAAA---TGAa----tcattgta---tttttt-ca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1571505 430 +  4147112 CCTTCTcgtcttcagtttttccatcACTGGCACTTGATGGAGAATCTTCCCGTTTGATCATATTCGAGTGACCCATGATTGCTGAAACAGCTCCCGCGTACTCTCTGAAGAAGTTTTGTGGATCCATATCGAGAGCTGGTCTAATTGTAGCGGTATTTCTAGGTTGCCTTTCGTTTTGAACAGCTG-AAACGATACGATAACCTCTGAA----GTCTTCTTTA----TCT-CT-----GATACCATCTTTGTTCATTCCCTTgttcaaacactttttcagtCGACATGCTTGACATTGGTTTCGGTGTGCCTTATCCACAACGCAATTTCCTGTTCCAGCTTGACATCGATAGATCAAACGTCTTCTAACAGATCTTTTGAAGAAACCAGAACACCCATTGCAAGCCAGAATGcctaaaa-actcaa----tttccgcAACTATTTTT-CA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  195302 426 +   227596 CTTTTTCATCTTCTGTTTTCCCATCACTCGCGCTCGACGGCGAGTCTTCTCTCTTCACCAAGTTGGAGTGTCCCATAATTGCCGAAACAGCTCCTGCATACTCTCGGAAAAAGTGCTGCGGATCCATGTCAATTGCTGGTCGGATTGTAGCTGTGTTTCGTGGTTGCCTCTCATTTTGAACTGCTACAAATGACTAGTTAGTCACTAAA----ATGTTCCTAT----TCA-TT-----TTTACCATCTTTGTTCATTCCCTTATTCAAACATTTCTTAAGTCGACACGCTTGACACTGATTACGATGTGCTTTATCTACTACACAGTTTCCAGTTCCCGCTTGACATCTGTAGATCAATCTCCTTCTGACAGATCTTTTGAAAAACCCAGAGCACCCATTGCATGCAAGAATCCCTGAAAATCTGGGCTTTTGATCATA---A--------
i caeJap4.Scaffold17545 C 0 C 0

a score=-4914.000000
s ce10.chrX             3198450 10 + 17718866 -GGTTTTCTTT
s caeRem4.Crem_Contig0   372237  3 -  4500979 -AGA-------
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold629   473572  9 - 33334924 -agatctCTT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1571935  5 +  4147112 -----CCTTG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  195728 10 +   227596 AACTTGTTTT-
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8257668 17 + 21540570 I

a score=200516.000000
s ce10.chrX             3198460 227 + 17718866 CAATATTACCATAGTGCTTCCCACTACTGACATCCCCACAAACTGCACAGCATAACGTAGGAGAAGAAGCTGTGGGTGGGCTATCAGTCTTTACGGATCCCATAGATGGGAAGCTGTTCACACTGATAGTGGTGTGATCCAAGGGAGGGGAAACACTTGCATTCATCCGCTGCTGATTGAAAGACATGGCCAACGCAGCAGCAATATGAGGAGAAATTACACCttaa
s cb4.chrX              8257685 227 + 21540570 cATTATTACCATAGTGTTTCCCACTGCTAACATCGCCACATACTGCACAGCAAAGCGTTGGAGACGATGATGTTGGAGGACTGTCCGACTTAACTGATCCCATAGAGGGGAAGCTGTTCACACTGATAGTGGTATGGTCCAATGGTGGTGATACGCTAGCGTTCATCCTCTGTTGATTGAATGACATGGCTAGAGCGGCAGCAATGTGAGGAGAAATCACGCCTAGA
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   372240 227 -  4500979 GAGTGCTACCATAATGCTTTCCACTGCTAACGTCGCCGCACACAGCACAACATAATGTTGGTGAAGATGAAGTCGGAGGGCTGTCTGTCTTCACTGATCCCATTGATGGGAAACTGTTCACACTGATAGTTGTGTGGTCGAGTGGTGGAGATACACTAGCATTCATTCTTTGTTGGTTGAATGACATGGCAAGAGCTGCAGCGATATGTGGAGAGATTACACCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   473581 224 - 33334924 ATCAATTACCATAGTGTTTTCCGCTGCTCACATCTCCACAAACTGCACAACACAAAGTGGGAGAGGATGCAGTTGGTGGACTATCTGTTTTCACAGATCCAACTGATGGGAAACTGTTGACACTGATTGTTGTATGGTCCAATGGGGGTGATACACTAGCATTCATTCTTTGTTGATTGAAAGACATCGCAAGCGCCGCAGCAATATGAGGAGATATAACACCT---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1571940 227 +  4147112 TTCTATTACCATAATGCTTCCCACTGCTCACATCTCCACAAACTGCACAGCATAAAGTTGGTGAAGAAGATGTTGGTGGACTATCAGATTTGACAGAGCCTACTGATGGGAAACTGTTCACACTGATGGTAGTGTGATCCATAGGTGGTGAAACACTGGCATTCATTCTTTGCTGATTGAATGACATGGCAAGAGCCGCAGCGATATGAGGAGATATAACACCTAAA
i caePb3.Scfld02_0      C 0 I 571
s caeJap4.Scaffold17545  195738 226 +   227596 -TAACGTACCGTAATGCTTTCCACTGCTAACGTCGCCACAGACTGCGCAACACAAAGTTGGTGATGATGCAGCTGGCGGACTTTCTGTTTTTACTGATCCGACTGAAGGGAAGCTATTCACACTAATAGTAGTATGGTCCAGAGGAGGTGAAACACTAGCATTCATTCTTTGCTGATTAAAGGAAATAGCAAGAGCAGCAGCAATATGGGGAGATATCACtcctgaa
i caeJap4.Scaffold17545 C 0 C 0

a score=90.000000
s ce10.chrX             3198687 1 + 17718866 a
s cb4.chrX              8257912 1 + 21540570 A
i cb4.chrX              C 0 I 909
s caeRem4.Crem_Contig0   372467 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   473805 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  195964 1 +   227596 a
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1572167 571 +  4147112 I

a score=546.000000
s ce10.chrX             3198688 1 + 17718866 a
s caeRem4.Crem_Contig0   372470 1 -  4500979 A
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   473806 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  195965 1 +   227596 a
i caeJap4.Scaffold17545 C 0 I 17
e caePb3.Scfld02_0      1572167 571 +  4147112 I
e cb4.chrX              8257913 909 + 21540570 I

a score=-33603.000000
s ce10.chrX             3198689  48 + 17718866 atttg---atacaaaaatatatttt-------------------------------------------aaaattta---------CATCG----AATACTGGTA----------------------------------------------CTC-
s cb4.chrX              8258822  46 + 21540570 ATTTG-----ATGAAGATCCCCACT-------------------------------------------ACAACCTT---------TGTCA----AAtaccaaaa----------------------------------------------atc-
i cb4.chrX              I 909 I 6
s caeRem4.Crem_Contig0   372471 100 -  4500979 ATGTGtatatacaaaaataaatact---------ttTCTGG-----------------------GTTGAAAGCGTTCTC----GACGCTA----ATtacaaaaa------ggagaaattacAAGA-------AACTACGTTTTAGACCAGATT-
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold629   473807  41 - 33334924 -----------------------------------------------------------------ATCTAAGTGTT----------GTTT----TTCATCCAGA------TGAACTAATTCTA---------------------------ATC-
i caeSp111.Scaffold629  C 0 I 2
s caeJap4.Scaffold17545  195983 149 +   227596 -----AATTAACAATATTagtttttaggtttttttctcTGGCAAGAATAtcataaataataaaaactaaaaattgtcCCTCGAGGCGTTATCATAATGCTAGAAATCATCGGAACTATAACTATATAGCTTTGattgtttttcatttctcacCC
i caeJap4.Scaffold17545 I 17 C 0
e caePb3.Scfld02_0      1572167 571 +  4147112 I

a score=189750.000000
s ce10.chrX             3198737 307 + 17718866 ACCCGCATTAAACATTGGAGGAGGAAAGAGCAAAGGTGTATTGAAAATTGATCGAACTCCAAGAATCCCCTCTTTCG---ACTCTTCTGAAAATCGTAATAAATGTAATTGGAAAACAGTTTTCCATCTCTA-TTCTCA-TTCTC---------------GATCTATTGGCCTGGTTCAAAAACAAAGACAGAGAGGAAAGATGTCATGTGCATTTGATTCAACGACGCCATAATTTCCTGTCAGAAGCACAATAATAA-CTATCGTCGGTG-------GCGCAATGATGAGAA---TAGAAATGTCAAATGAGGCAG-----------GAGAAAGCAAG-----ATATCTATA
s cb4.chrX              8258874 292 + 21540570 ACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCtttg---tgtcttctgaaaataattattgttCT--------CGCGCCGCTATATTTCC--TCCTCA-TTCTC---------------GATCTTATGGCGCGACTCAAAAACAGAGAC----AGGAAAGATGTCATGTGCATTTGATTCAACGATG-CATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCG---CGGGGCCCTAtattgatgatga--tgagaaaTGTCA------AGAG-----------GAAAAAGCAGAGTCTTCTA------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   372577 304 -  4500979 ACCTGCGTTGAACATTGGTGGCGGAAACAGAAGTGGCGTGTTGAATATTGACCGAACTCCGAGAATACCCtctttga---cgtcttctgaaaatcgtaATAAAC------------CGTCTATCTAATTCTAATTCTCA-TTCTC---------------GATCTATTGGCTCGACTCAAAAACAGAGAC----AGGAAAGGTGTCATGTGCATTTGATTCAACGATG-CATAATTTCCTGTCAGAAGCACAACAATAA-GTATCGTCGGCACACCAACCAATaatgatgagaa--gagaaaatgtcaaatgaGAAAG-----------GAGAAAGCAAGAATATATAACTTTA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   473850 288 - 33334924 ACCTGCGTTAAACATAGGAGGAGGAAACAGAAGTGGAGTGTTGAATATTGAACGAACACCCAGAATCCCCTCTTTta---cgtcttctgaaaatcataat-AAC------------AGTTCATCTCG------TTCTCA-TTCTC---------------GATCTTATGGCTCGTCTCAAAAACAGAGAC----AGGAAAGATGTCATGTGCATTTGATTCAACGATG-CATAATTTCCTGTCAGAAGCACAACAATAA-GTATCGCCG----ACCAG-ATAtaatgatgagaa---aagaaatgtcaAATGAGAAAG-----------GAGAAAGCAAGAA---ATATCTTCA
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1572738 294 +  4147112 ACCTGCATTAAACATTGGTGGCGGAAATAGGAGAGGTGTGTTGAATATGGAACGAACACCAAGTATTCCCTCTTTGA---CGTCGTCTGAAAATCGTAATAAAC------------AGTTCTGCTAA------TTCTTATTTCTC---------------GATCTCTTGGCTCGTCTCAAAAACAGAGAC----AGGAAAGGTGTCATGTGCATTTGATTCAACGATG-CATAATTTCCTGTCAGAAGCACAACAATAA-GTATCGTCGCCACACCAG-ATATaatgatgagaa---gagaaatgtCAAATGAGAAAG-----------GAGAAAGCAAGCA---ATATTTTCA
i caePb3.Scfld02_0      I 571 C 0
s caeJap4.Scaffold17545  196132 319 +   227596 ACCGGCATTGAACATTGGAGGTGGAAACAGCAATGGCGTATTAAAAATAGATCTCACTCCAACGAAGTCTTCTCTTGAACCGTCTTCTGAAATCACTTGCAA--------------CGTTTCGGAGGTTGAA-GGCAGA-CTGTCGAAGACAGTGAACAAGATTTGTTG--CCGTTTCAAAAACAGAGAC----CGGAAAAATGTCATGTGCATTTGATTCAACGATG-CATAATTTCCTGTCAGAAGCACAACAATAA-CTAACGCCGTCA-------CTATA-TGATGAGAATAGGAAAAATTCTAAATGAGAAGGCATGGCTAGcagaaataaaatgaa---atacgGATA
i caeJap4.Scaffold17545 C 0 I 25

a score=-4447.000000
s ce10.chrX             3199044 17 + 17718866 GTATATTAGCTGCTCGA
s cb4.chrX              8259166  1 + 21540570 ----------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   372881  5 -  4500979 GCGT------------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   474138  5 - 33334924 ATAT------------A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1573032  3 +  4147112 CTA--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  196451 25 +   227596 I

a score=-6133.000000
s ce10.chrX             3199061 54 + 17718866 -CGGGAAC---TGCGTCAGTTTTTTTTTTC----------------AAAAAGTGATTTTGAAAACAGATAGAAA----
s cb4.chrX              8259167 49 + 21540570 -CAAGAAAAGTAACGTCA------------------------AAAGAagatatgatttttgaaacggaTAGGTG----
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   372886 57 -  4500979 -CGGAAACGGCTACGtcaatattt----------------agaaaaaatagataattgGAAAAACGGATAGAGG----
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   474143 73 - 33334924 -CGGAAACAGCTACGTCAATTTCTCTGCAGTGTGTGAGCGcgaaaaaatgaggtttttttgaaacggatAGAGA----
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_0      1573035 51 +  4147112 -----------TACgtcaattcttttttgctgtccga------------aaagtgttttttgaactgaaaacga----
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17545  196476 46 +   227596 CGAGAAAGGGGAACGCCCTTTCTT--------------------------------TCCGGAAATCAACAAGTAAAAT
i caeJap4.Scaffold17545 I 25 C 0

a score=-6582.000000
s ce10.chrX             3199115 21 + 17718866 GGAAGTAGGTGTAGTTGTGAA----------
s cb4.chrX              8259221 18 + 21540570 ATGGGTAGA-GT--GCGTAAA----------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   372951 20 -  4500979 ACGAGTAGA-GTAAAAGTTAA----------
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0      1573098  9 +  4147112 ACGAGTGAA----------------------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17545  196522 18 +   227596 -------------AGAGCTAATTTTTGGTGC
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   474216 15 - 33334924 I

a score=223244.000000
s ce10.chrX             3199136 461 + 17718866 ATAGAAAAAATATTCGGAAAAAACTCCAAAAAAAATCTATGAGAGCTCGAC-AAACGGAAATTGAACAGGAA---------------GAA-------GTATGAAATCATGAACATACCTGTAGCTTTTGATGTCGAAAAATTGAGCGGCTCATCCTCATCGCTCATTTTCAAAATATCAGCCAACGCAGACGCCAGTGTTGACTGTAGAAGTGGTCTTCCTTTTG---TCGAAGATCGAATGACTTCTTCTTCCAGTTTTGACTCGTGCCACTTCAAGCTCCTCCCACC--AGA-CCGAGGTCAGT-GA-AGCGCTGACCCAGCACTTGGGACAGCCAATCGACGCGTCCCACCAAGACACGCCCACTTGTTTT-CAACTTTTGCTTCTG--TGGAGATAGTAGAAAGGGGTCCAGCCTGTGCTTCTTCTTTGTTTGGGTTTGG-------TGGTGCTCAATCTGATTACTGTTGACTGCAATTGAAAAG-----CTGAAAACAAAA-
s cb4.chrX              8259239 419 + 21540570 ------------------------------CTCG------------CAGACTAGCCGGAAATAGGaggaaga---------atcaa-aaatagagaGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTcactcattttcagaatatcaaccGCCGCAGACACCAGC-TTGACTGTCGATGTGCGC--AACTTGTGTCGCAAATATCAAATGA---CTTCTTTCAGTCTTGACCCCTGCCACTTCAAGCTCCTCCCACACCCCA-CGAAGATCAGA-GGCAACCACGGCTCTGGCGGCGGCACGACCAATCGACGCGTCCCAGCAAGACACGCCCACTTGTTTTCCAACTTTTGCCTTTGAATGGTAATCG-------------AGAC-------CAGTGTCTGTGGGTTCTGGTAGTGTAT-GTCTTCAATTCGATTACTGTCG---TCAATTAAAGTG---AGCTGAAAGGAAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   372971 413 -  4500979 ------------------------------ATCAGTCTGGATGTGCTAGACTAAGCGGAAATTGAACGGGAA---------ACCCG-AAA---------ACGAAACGATGATGTTACctgtagtttttgatgtcGAGAAGTTGAGCGGCTCATCCTCGtcactcatttttgaaatatcaaccAATGCAGACACCAGC-TTGACTGTAGTCGAACG----ACTTGT---TCGAATATCAAATGA---CTTCTTCCAGTCTTGACCCCTGCCACTTCAAGCTCCTCCCACA--AGA-CGAAGATCAGA-GA-GGCACCAGCTCAGCACTTGGGACAACCAATCGACGCGTCCCACCAAGACACGCCCActtgtttt-caacttttgccTTTG-ATGGAAATAGTAGGA------CCAGAC-------CCTTCTTTTCTAGGTTTGG-------T-GTCTTCAATCTGATTACTGTTG---GCAATTGAAGTA---AGCTGgaagaacaa-
i caeRem4.Crem_Contig0  C 0 I 474
s caeSp111.Scaffold629   474231 440 - 33334924 ATAGCAAAAGT----------------TAAATCAGTCTGGATGTGCTAGACTAAAcggaaattgaagagataGTGAGAGTGACcaacaaa-------tgaaatcat--tgtCG-TacctgtagtttttgatgtCGAAAAGTTCAGCGGCTCATCTTCGtcactcattttcagaatattggCCAATGCAGATGCCAGG-TTGACTGTCTAAGATCG----ACTTGG---TCGAATATCAAATGA---CTTCTTCTAGTCTTGACTCGTGCCACTTCAAGCTCCTCCCACC--AGT-CTGAGGTCAGT-GA-AGCGCTGACCCAGCACTTGGGATAGCCAATCGACGCGTCCCACCAGAACACGCCCACTTGTTTT-CAACTTTTGCCTTTG-ATGGAAATAGTAGGA------CCagac-----ttctttcttttttaggtTTGG-------T-GTCTCCAATCCGATTACTgttg---gaaattgaagaagagatctgaatggaaa--
i caeSp111.Scaffold629  I 15 I 401
s caePb3.Scfld02_0      1573107 424 +  4147112 ---GCAAAAGT----------------TAAATCAGTCTGGATATGCTAGACTCAgcggaaa-tgagaagagagt-------atcaa-aaa-------tggaataatgATGTTGTTACCTGTAGTTTTTGATGTTGAAAAGTTCAGCGGCTCATCTTCGTCGCTCATCTTGAGAGTATCGTTTATAGCGGAAACCAGT-GTGACTGTAATAGATCT----ACTTGG---TAGAATATCAAATAA---CTACTCTTAGTCTTGACTCGTGCCACTTCAAGCTCCACCCACA--AATACTGAGGTCAGTAAA-AACTATGACCCACCACTTGGGACAACCAATCGTAGCGTCCCACCAAGACACGCCc-cttgtttt-caacttttgccTTTG-ATGGAAATAGTAAAA------CCAGG--------CTATCCTTTCTGAGGTTGG-------T-GTCTTCAATCTGATTACTGTCG---GCAATTGAAAAG-----ctgaaaggaaa--
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  196540 401 +   227596 ---------------------------ACACATAGTTTACAGACACTTAGAAAAACGTAAA-TGAGCAATGA---------TATAA-AAA----TAGAtataaaataatttatttaccTGCCGTTTTTGAAGTGGAGAAATTGAGCGGCTCATCCTCGTCACTCATTTTAAGAATATCAGCTAGTGCAGACGCCAGT-TTGACTTTAGAATAG------CCCGGA---AGGAAGACAGAATGA------CTTCCAGTCTTGATTCGTGCCACTTCAAGCTCCTCCCACT---GC-TTGAGGTCAGT-GA-AGCGCTGACCCAGCACTCGGCGCAGCCAATCGACGCGTCCCACCAAGACACGCCCACTTGTTTT-C-ACTTTTGC-TTCG-ATAAAA----TGGGA------CCAGAC----------TCCTTTC-------GG-------T-GTCTTCAATCCGATTACTGTCT---CCAATTAAGGATCGAGACTGAAAAAACA-A
i caeJap4.Scaffold17545 C 0 I 60

a score=-34019.000000
s ce10.chrX             3199597 800 + 17718866  
s cb4.chrX              8259658 641 + 21540570  
i cb4.chrX              C 0 I 59
s caePb3.Scfld02_0      1573532 514 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17545  196941  60 +   227596 I
e caeSp111.Scaffold629   474671 401 - 33334924 I
e caeRem4.Crem_Contig0   373384 474 -  4500979 I

a score=-519.000000
s ce10.chrX             3200397 42 + 17718866 AGTTAACTACTATCCTCGTTGAAAACCACTTTTTTGGTTGAC
s caePb3.Scfld02_0      1574046 14 +  4147112 ------------------tctaaaatca----------tAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  196941 60 +   227596 I
e cb4.chrX              8260299 59 + 21540570 I
e caeSp111.Scaffold629   474671 401 - 33334924 I
e caeRem4.Crem_Contig0   373384 474 -  4500979 I

a score=-2565.000000
s ce10.chrX             3200439 36 + 17718866 TTACAAAACGTG---TGATACTGTAAATT--TTAAAAGTTT
s cb4.chrX              8260358 41 + 21540570 TTACAAAAACGAGCCGCCGAACATCTGTccctaaaactttt
i cb4.chrX              I 59 C 0
s caePb3.Scfld02_0      1574060 18 +  4147112 ---------------TCATAGCATCAGTC-----AA---TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  196941 60 +   227596 I
e caeSp111.Scaffold629   474671 401 - 33334924 I
e caeRem4.Crem_Contig0   373384 474 -  4500979 I

a score=-8200.000000
s ce10.chrX             3200475 78 + 17718866 CAAAAATG--TTTTGAAAAGCTTCATTAGGATTTTCCAACTGACGATCCTTCATCTTTAAGAACCAGAACAAGTATTGTA
s cb4.chrX              8260399 73 + 21540570 ttcgggtgattttgaaagggattttttgggggt-----actggggattttCACATCATATGAA--AGAGCgaatcaacta
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0      1574078 37 +  4147112 TATGAGTg---ttggaggaaa-------------------------------------aaaag--agaac-aatcgACCA
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17545  197001 63 +   227596 CAAGATTG--TTTTTACAAGTCTAG-------------ATTTgaacttttccttttttggaaa--cgtaaaaatatcaaa
i caeJap4.Scaffold17545 I 60 C 0
e caeSp111.Scaffold629   474671 401 - 33334924 I
e caeRem4.Crem_Contig0   373384 474 -  4500979 I

a score=-9762.000000
s ce10.chrX             3200553 70 + 17718866 AAAAATG--AAACAGATGTG----------------AAAATTTCC----AAAAAAAAAGTTGATCACTC----------GAAAACAATGTGTCAACAGAAAA
s cb4.chrX              8260473 83 + 21540570 --aaatttgaaataacgTTGCTAGAGttaagagcaaaaaaaaatc-aagaaataaaAAGTCGTTGAATC----------------GATGAGTcaacgagaaa
i cb4.chrX              I 1 I 2
s caeRem4.Crem_Contig0   373858 63 -  4500979 aaaaatt-----taacattg----------------aaaaagttc-------caaaaagttGGTCACTCT-------GCGCCGATAGTGagtcaac----ac
i caeRem4.Crem_Contig0  I 474 I 2
s caePb3.Scfld02_0      1574127 52 +  4147112 ----------------------------------agaaaaaattc----cgagaaaaagtTGGCCACTC------------TAACGGTGAGTCACCATTAAA
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17545  197064 65 +   227596 ------------------------------------aagaaacacaaaacaaaggaaattttgtcaatttaatgttaaaaaaagaaaagaaacgacaacaa-
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   474671 401 - 33334924 I

a score=143934.000000
s ce10.chrX             3200623 208 + 17718866 AAAAGTTGGTCAAG-T----TTTATTTGTG---CTAATGGAAGACATCAG------------AAAAATT-----TTCGATGACAAATGGTTTTCGATGTAACATTTGAGCCATCTTT------CCTGCTTCAACTGCTAACACTTATGAAGGTAATCAAGTGGCAA-----CAAGCACCTCA--AGAGTATATCACGGAATTAATGAGGTGGCAAGCAGCACG------CCGCCGACAATCAG-AAATTGCCT
s cb4.chrX              8260558 231 + 21540570 gaaagttggACAAG-T----TTTATTTCTCTGACCGACGTTAG-AAGCAAGTAGCCATTGCACGAAATTTTGTATCTCGTGACAAATGGTTTTCGATGTAACATTTGAGCCATCCTCAGGATGCCTCTTTACTGCCCCAACACTTATGAAGGTAATCAAGTGGCAA-----CAAGCACCTCAAGAGAGTATATCAAGGAGTTAATGAGCTGGC-AGCAG--G-------ATGCCGACAATCAG-AAATTCCTC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   373923 209 -  4500979 aaaagttggtcaag-t----tttatttttttt-tcgacggTAG-CAG---------------CGAAATTCTCAATCTTATGACAAATGGTTTTCAATGTAACATTTGAGCCATCTTC------CCTGCTTTCAATGCCAACACTTATGAAGGTAATCAAGTGGCAA-----CAAGCACCTCA--AGAGTATATCAAGGAGTTAATGAGGTGGC-AGCAGCAC-------ACGCCGACAATCAC-AAATTTCCC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   475072 210 - 33334924 AAAACCTGGTcaagtt----tttattctttg--CTAATGGTGG-TAGAAG------------CG--------AATTCAATGACAAATGGTTTTCGATGTAACATTTGAGCCATCTTT------CCTCACTTTACTGCCAACACTTATGAAGGTAATCAAGTGGCAACAAGCCAAGCACCTCA--AGAGTATATCATGGAATTAATGAGGTGGC-AGCAGCAT-------ACGCCGACAGTCAAGAGATTTCCT
i caeSp111.Scaffold629  I 401 I 28
s caePb3.Scfld02_0      1574179 212 +  4147112 ---ACCTGGtcaag-t----tttatttctcg--GAGATGGTAG-Ctgcat------------ca-aattttcaattctatgaCAAATGGCTTTCGATGTAACGTTTGAGCCATCTCT------TC-AGCATTACTGCCAACACTTATGAAGGTAATCAAGTGGGAAGAAGCCAAGCACCTCA--AGAGTATATCATGGAATTAATGAGGTGGC-AGCAGCATA------ACGCCGACAATCAC-AGATTTCCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  197129 208 +   227596 aaaagttggaCAAG-CTGAATTTGCTTTTCG--CTAATGGAGG-CCG---------------CACAATTTTT--CCCGATGACAAATGGTTTTCGATGTAACATTTGAGCCATCGCC------ACTACTGTCGCC-----TACTTATGAAGGTAATCAAGTGGCAA-----CAAGAACCTCA--AGAGTATATCACAGAATTAATGAGGTGGC-AGCAGCACACAGCACACGCCGACAATCAG-AAATG----
i caeJap4.Scaffold17545 C 0 C 0

a score=-13283.000000
s ce10.chrX             3200831 45 + 17718866 CGCAAGCCTGCCCCCCTGAGCGTCTGTGTGAGCCCC----ATATGAGTT
s cb4.chrX              8260789 43 + 21540570 TCCGAGTAAG--GCAATAAGTCCC---ATGAGCCTCGAT-TGATGAGTT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   374132 33 -  4500979 -------------CACTAGGCTTC---ATAAACCAAAACATCAACGGTT
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      1574391 31 +  4147112 -------------CACTA-GTCCC---ATGAGGAGAACCAACATTGTT-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  197337 18 +   227596 ---------------CTCAGTTCACATGCGAGT----------------
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   475282 28 - 33334924 I

a score=-26656.000000
s ce10.chrX             3200876 100 + 17718866 TTTAGTGTCAGAACA-GGCAATAAAAAGAAAAGAAGACACACGCGGTAGATGGAAGAGAAAG------AGGAATGACAA----------ACAAGT-TGT-AA-------AATGCAAACAAGGA-TAT
s cb4.chrX              8260838  62 + 21540570 TGTGCGAACAGAAAT----------------------------------ATATGGCGGTAAc------gaaaaacaata----------gaaa---tgT-A--------CAATCTGGAGAGAGT---
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   374171  70 -  4500979 CTTAGAATTAAGAAT----------------------------------AGgggagaaagag------gaaaaagaaaa----------aagagt-tgt-aA-----ACCATACTGCATGGATTTCT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   475310  89 - 33334924 TTTGATGACAGAAAA-GGC------------------------------AAAGGAGAAGGCG------GTGAATtagaacaaagaaaagagaagt-tgtaaaaaagtataaaacaAGAAAGGATTTG
i caeSp111.Scaffold629  I 28 C 0
s caePb3.Scfld02_0      1574423  74 +  4147112 TTACGTGACACAAAA----------------------------------CAGAGACAAGGCG------GTAAAACGGAA----------AGAAGT-Tgt-aaaaattataaaacatGAAAGAA-TGG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545  197355 106 +   227596 TTTAGTGGCAGCAGGCggtaaaaacaataaaactgGCTCGATTC-----AGATGAAAACGAGTTTGTTGTAAATCGGAA----------CGGACCACGT-ATGGAAATGCATACTAATATGT-----
i caeJap4.Scaffold17545 C 0 I 37

a score=-11543.000000
s ce10.chrX             3200976 30 + 17718866 CATGGAAATAAAAAGGTGCCGGAT----------------------GAATTC
s cb4.chrX              8260900 14 + 21540570 --TGTAAAGTTAT--------CAT----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   374241 52 -  4500979 TATGTAAATTAATGTATAGTGCATTCTTATGTTGAAAGGTACCGAGGAACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475399 27 - 33334924 CATTTAG----AGGGAAActa---------------------aaaagaattg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574497 35 +  4147112 TGTTTGGTGAAATGGAATGTAtaa-----------------gaaaagaatag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197461 37 +   227596 I

a score=-66079.000000
s ce10.chrX             3201006  50 + 17718866 CAAT--------AGCACTGT-----------------------AACATCTGTTTCATCCTTT---------------------------------------------------------AAAAATC---A---------ATAATTTGATA
s cb4.chrX              8260914  73 + 21540570 ------------ACATCTGTGTATGTGTGCATGTATATG----AAAGGTTTTATTCaggttt---------------------------------------------tggcgggaaattgtAAATC---A---------ACATCTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   374293 116 -  4500979 GGTA--------ACATCTGTCAAAATATATGTGTGTGAGTTCTAATGGCTATATACTTCTTTACCACCCCCA----ACGGAGGTTTTA-------GACA-----AAAGGGAAAAACACTATAAACTG-GA---------ACATCTGTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475426 120 - 33334924 aatg--------------gtCGCGA---GCAGACATTCGTGTCGAAATCGGTCAACACACTTGGTACCAGCTGTTGATGTGAGTTTTAATGTCTCTATATCTATAA----TATTTCATAGTAGATAGGGA---------ACAACGCTATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574532 140 +  4147112 aaagtAG--GCTCCGTCTGTCAAAATTTACCGACATATACGG-GACATCTGTT--CGAGTATGATTCCTATAGTT-ATTCAATCTTCAATG----CACACTCCTAAGGGGGATCTCatgaaaagcggaaaaaaaactatataatAGAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  197498  73 +   227596 ----CAATTGCGCCGACATTtgacattaaaataaataaatgaatacaATCTTTTCAACGTTT--------------ACTAGTACTTTGACG-----------------------------------------------------------
i caeJap4.Scaffold17545 I 37 I 95

a score=-13776.000000
s ce10.chrX             3201056 46 + 17718866 -------TGCAAATCTAGAA-------------ACTCAATCTATCACATTAT-------TTGAAAAATGTAAG-------
s cb4.chrX              8260987 46 + 21540570 -------TCAGAA--CAGAT-------------ATTCGGTTT-CCAAAtatc-------tttccaaaaaaaatagg----
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   374409 52 -  4500979 GACTTGCTCTAAA--AAACT-------------AATTACTTT------TGAC-------TTCATATTAGAAATCTGCACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475546 58 - 33334924 -------TATGGA--AAGAATCTTCTTTCGTTGActtgtttt------tgataataataataataataataat-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574672 29 +  4147112 -------TCTG----------------------ACTTGTTTT------TG---------TCAAAAGTAATAAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197571 95 +   227596 I

a score=-2288.000000
s ce10.chrX             3201102  6 + 17718866 ---TTC---------ATG
s caeRem4.Crem_Contig0   374461  6 -  4500979 -ACT-----------ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475604 18 - 33334924 tgcttttcatttcaaatc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574701 18 +  4147112 TACTTTTTACCTTGGATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197571 95 +   227596 I
e cb4.chrX              8261033 13 + 21540570 I

a score=-5867.000000
s ce10.chrX             3201108 38 + 17718866 GAACCT----------CCG--ACAAA-----------GTGCATAG------------ATCCTCTGCAACT-----TCT-
s caeRem4.Crem_Contig0   374467 47 -  4500979 AAAGGT----------tcaatgaaaa-----------gtgaaaagagtcAATT----TCTCGTCGCAAC------TTT-
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   475622 59 - 33334924 aaaagtaTGT------TCA--GAAGA-----------GTAAACAAAGCCAagctttatttttttgcaacCTAAAATAT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574719 65 +  4147112 AAAAGTGGGCGCGCAGTCA--AAAGAGTACATGCTATGTAAACAGagtcaag-----tttttttgcaaC------TCT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  197666 47 +   227596 gaacatcTGT------TAA--AAAAG-----------GTCAGACGCGTTC-------GCTCTCTGTAAC------TTTT
i caeJap4.Scaffold17545 I 95 C 0
e cb4.chrX              8261033 13 + 21540570 I

a score=967.000000
s ce10.chrX             3201146 2 + 17718866 TG
s cb4.chrX              8261046 2 + 21540570 TA
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   374519 2 -  4500979 ta
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   475681 2 - 33334924 TC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574784 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  197713 2 +   227596 TG
i caeJap4.Scaffold17545 C 0 I 112

a score=-2183.000000
s ce10.chrX             3201148 22 + 17718866 TGTTCTTTTCCAGC-TGTAATCA
s cb4.chrX              8261048 22 + 21540570 TGTTTTTTAAGAGC-AATAATTA
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig0   374521 19 -  4500979 ctttcttcaaaatg-taTCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475683 23 - 33334924 TATTATACCGATTtccattatta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574786 22 +  4147112 TGTTCTCTTCATCT-AATTATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197715 112 +   227596 I

a score=-4846.000000
s ce10.chrX             3201170 80 + 17718866 -------------TTGGGTGCTGATCGCACGAGGGCACCCAAATAACAGGCTTTGCAC--------AAATGTTGTGGTGATTTTTGG------------TGAATCAATTACAC--
s caeRem4.Crem_Contig0   374540 76 -  4500979 TTAACTTCTGATCTTAGCTTCTGG----------------AAATGATATGTTTGGTGC--------AAATGCTTTGAAGATTTCTGA------------TGATTCAATTA---CA
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   475706 71 - 33334924 ------ttattttttggtttttga----------------aaatcaagacCCTGTTCC------CAGAATAACATT--GGTTTTCGA------------TGAACCGACTAGCC--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574808 84 +  4147112 ------Attgctttttgattttag----------------attttgaaacttttttcccgatttcaaaataata----gctttttGAGGGGATTAGTGGTGAGCCAATTA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197715 112 +   227596 I
e cb4.chrX              8261070 64 + 21540570 I

a score=-3311.000000
s ce10.chrX             3201250 17 + 17718866 CGGATAATGGCTAGTCG
s cb4.chrX              8261134  3 + 21540570 --------------CAG
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig0   374629  3 -  4500979 --------------CAG
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629   475777 17 - 33334924 TGGAtaatggaaatgag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574892 15 +  4147112 -GGGAAGTAGCAATT-G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  197715 112 +   227596 I

a score=83122.000000
s ce10.chrX             3201267 200 + 17718866 AA----CTTC------TTG---------TTATCCAC--TTTG-TATGTTTATT----CAAATTGCT----GCAGAAAGTAATCTACAGTAATAAGGGGGTACGC--------GATGACCCC----------TGGGGTCTGCGCGAGCAGGAGGCG-AAGAACAAAGGATACCCCCGTCTCCTTATTGGATTATTGAAATGGAGCAG---AGAT----------GTGGGTAGA--CGGAAGA-----TTGTGCCGGGGTTATGATTGCAA
s cb4.chrX              8261137 240 + 21540570 ATACC-CATTAGAAACTTG---------TTATCCGCAGTGTGTTTTGTTTGTCTCCATGAATTGTAATGGATAAAAAGCAATCTACAGTAATAAGGGGGTTCAG-CAT----GATGACCCCATGGGGGGCGAGCACCA--TGCGAGCAGGAGGGC-AAGAACAAAGGAT--TGCCGTTTCCTCATTCGATTATTGAAATTGAGCGCAGAAGATGCATGCGTGTGTGTGTTTG--TGGAAG------ATGAGTC-TAGTTATGATTGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   374632 209 -  4500979 AAACTACATC---AACTTG---------TTATCCAC--TTTGTTTTGTTTGTC----TAAATT-------CTAGAAAGCAATCTACAGTAATGAGGGGGTACAACCATCACGGATGACCCC----------TGCAGTC--TGCGAGCAGGAGGGCTAAGAACAAAGGAT--CGCCGTTTCCTTATTGGATtattgaaattgagag----agatg---------GTGTGTCTG--AGGATGA-----ATGAGCT-CCGTTATGATTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   475794 200 - 33334924 aaacaacATC---AACTTG---------TTATCCAT--TTAG-TATGTTTGTC-----ATGTT-------TAAGAAAGcaatctacagtaataaTAGGGTACA---------GATGACCCT----------CGGGGTC--TGCGAGCAGGAGGGC-AAGAACAAAGGAT--TGCCGTTTCCTCATTGGATTATTGAAATTGAGCAT---AGATG---------GTGCGTGGG--GGGAAGAGACTGGTCTGC----GTTATGATTGCAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1574907 189 +  4147112 AAACTACATC---GAATTG---------TTATCCAC--TTTG-AATGTTTGTC-----ATGTT-------TGAGAAAGCAATCTACAGTAATAACAGGGTAGG---------GATGACCCC----------TGGGGCCT-TGCGAGCAGGAGGAC-AAGAACAAAGGAT--TGCCGTTTCCTCATTGGATTATTGAAATTGAGCAGAGAAGATG---------GTGTGT-----------------CTCAGT----GTTATGATTGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  197827 188 +   227596 ----------AATTTCTTGTTATTTTCTTTATCCAC--TCTG-TACATTGTTT-----ATTCT-------AGAGTAAGTAATCTACAGTAATGAGGGGTTT-----------GATGAATCG----------TGC------TCAGAGTG--------AAGAACAAAGGAT--CGCCGTGGACTGATTGAATTATTGAAATTGAGCGG---AGATG---------GTGTAGCAGAAGGGAAAA-----AGAAGG--AGGTTATGATTGCAA
i caeJap4.Scaffold17545 I 112 I 212

a score=9410.000000
s ce10.chrX             3201467 20 + 17718866 ATAGGCGCACTCATCTGGTT
s cb4.chrX              8261377 16 + 21540570 TTTA----ACTCACTGGGTT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   374841 20 -  4500979 TTTAGCGCACTCATCTGGTT
i caeRem4.Crem_Contig0  C 0 I 275
s caeSp111.Scaffold629   475994 20 - 33334924 TTTAGCGCACTCATCTGGTT
i caeSp111.Scaffold629  C 0 I 332
s caePb3.Scfld02_0      1575096 20 +  4147112 TTTAGAGCACTCATGTGGCT
i caePb3.Scfld02_0      C 0 I 381
e caeJap4.Scaffold17545  198015 212 +   227596 I

a score=740.000000
s ce10.chrX             3201487 70 + 17718866 GGCTTACCAAAACTCTGGCCAAATCAAGAAGGGGGTATTAATAGAAATTGTGATGAAAAAGCCAAATTTT
s cb4.chrX              8261395 68 + 21540570 GGTTTTC--GGATTTTGGTATCCTTGAATAGGGGAAGTCGAAAAGAGTGATgagtgaaaaatggaatttt
i cb4.chrX              I 2 I 134
e caePb3.Scfld02_0      1575116 381 +  4147112 I
e caeJap4.Scaffold17545  198015 212 +   227596 I
e caeSp111.Scaffold629   476014 332 - 33334924 I
e caeRem4.Crem_Contig0   374861 275 -  4500979 I

a score=0.000000
s ce10.chrX             3201557 110 + 17718866 GTAATTGTAATTTTAATAACCCAAGCGAAATTACAAATAACAGCTCACTATAATTTTGAAACACTTTTGTCGTGTTTTACCCAGTAATCTTGTATATACTATACTCTACT
e caePb3.Scfld02_0      1575116 381 +  4147112 I
e caeJap4.Scaffold17545  198015 212 +   227596 I
e cb4.chrX              8261463 134 + 21540570 I
e caeSp111.Scaffold629   476014 332 - 33334924 I
e caeRem4.Crem_Contig0   374861 275 -  4500979 I

a score=-5476.000000
s ce10.chrX             3201667 689 + 17718866  
s cb4.chrX              8261597 873 + 21540570  
i cb4.chrX              I 134 C 0
e caePb3.Scfld02_0      1575116 381 +  4147112 I
e caeJap4.Scaffold17545  198015 212 +   227596 I
e caeSp111.Scaffold629   476014 332 - 33334924 I
e caeRem4.Crem_Contig0   374861 275 -  4500979 I

a score=213.000000
s ce10.chrX             3202356 1 + 17718866 -T
s cb4.chrX              8262470 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   375136 1 -  4500979 -T
i caeRem4.Crem_Contig0  I 275 C 0
e caePb3.Scfld02_0      1575116 381 +  4147112 I
e caeJap4.Scaffold17545  198015 212 +   227596 I
e caeSp111.Scaffold629   476014 332 - 33334924 I

a score=-1305.000000
s ce10.chrX             3202357 44 + 17718866 -TTTCCTGACTT-CTTTCTCATCAGATTAGCGACAGTTTCAAGTGG-
s cb4.chrX              8262472 40 + 21540570 -CTTTTCAACTCCGCTTctcatcttttc-----aatttttcaatcc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   375137 36 -  4500979 -CTTCCTAA----ACTCTTCATCAACTC-----CATTCCCAAAGTG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1575497 40 +  4147112 tttcttcaatt--tgttcTCATCACTTC-----CGTCTTTAGAATTG
i caePb3.Scfld02_0      I 381 I 1
e caeJap4.Scaffold17545  198015 212 +   227596 I
e caeSp111.Scaffold629   476014 332 - 33334924 I

a score=-4501.000000
s ce10.chrX             3202401  8 + 17718866 TTTCAA-----------CA
s cb4.chrX              8262512 19 + 21540570 tTCCAATTCCTCTAGGACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   375173  6 -  4500979 GTCC-------------CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476346  3 - 33334924 -TCT---------------
i caeSp111.Scaffold629  I 332 C 0
s caePb3.Scfld02_0      1575538  7 +  4147112 -TCCCA-----------TA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17545  198015 212 +   227596 I

a score=207995.000000
s ce10.chrX             3202409 265 + 17718866 CAAAATCTCT--TTATTTT-----GG--CTAGGTATGATGAGCTATCGCTCT-----C--TTCCAGTGAGCGGGGGCCACATCTGCCCTGTTAGTAGATCGAATTA----TCCGAA------GGGTCG--GTGTTATTGC-CGGCTTCTTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGAATCC-TCTTCTCTCCATATATATGTCT--------------------------TCCGA-----TGAGTGCCTCAACTTGTTATTTTTATTTGCAATGTGT------CACAGAT-----------GTGCGGTAATCTGTTGCGACTAGC
s cb4.chrX              8262531 312 + 21540570 CAACAATTTCCATCAATTTCTCGCGGTACTAGGTAGGATGAGCTATCGCTCTCTTC-CTATTCTT-------TGGGACACATCTGCCCCGTTAGTAGATCGAATTAGGACG-GCCG------AGGTCGCTATGTTATTGCTCGGCGTCCTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGAATCC-TCTTCCG----TCTATATATCCTTTTTTCCCGCGCATTTTCCAAAGATGATGA-----CAAGTGCCTCAACTTGTTATTTTTATTTGCAGAGTCA------CAAATACACTCATAGCAAATGCGGTAATTTGCCGCGTTTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   375179 257 -  4500979 caacaacttt--tcaattt-----gGTACTAGGTAGGATGAGCTATCGCTCT-----CTATTCCT-------GGGGGCACATCTGCCCTGTTAGTAGATCGAATTA----T-CCCA------GGGTCG--ATGTTATTGC-CGGCGTCCTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGAATAA-TCTTCTC----TATAGGTTTCC--------------------------GACGA-----CAAGTGCCTCAACTTGTTAGTTTTATTTGCAGTGTCA------CACAGAT-----------GTGCGGTAATTTGCCGCGTTTGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476349 258 - 33334924 CAACAATGTC--TATGTTT-----GGTACTAGGTAGGATGAGCTATCGCTCT-----C--TTCCA-------TGGGCCACATGTGCCCCGTTAGTAGATCGAATTA----TCCCCG------GGGTCG--GTGTTATTGC-CGGCGTCCTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGAATCCTTCTTCTC----TATATCCTCCC--------------------------GACGA-----CAAGTGCCTCAActtgttatttttgtttgCAGAGTCAG-----CACAGAT-----------GTGCGGTAATTTGTTGCGCTTCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1575545 259 +  4147112 CAACAATTTC--TATGTTT-----GGTACTAGGTAGGATGAGCTATCGCTCT-----C--TTCCA-------GGGG-CACATCTGCCCCGTTAGTAGATCGAATTA----T-CTCG------GGGTCG--GTGTTATTGC-CGGCGTCCTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGAATCCTTCTTCTC----TATATCTTTCC--------------------------GACGA-----CAAGTGCCTCAActtgttatttttatttgcAGAGTCAGTCACCCTCAGAT-----------GTGCGGTAATTTGTGCCGCATC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  198227 262 +   227596 CAaccttttt--tctgttt-----ggcacTAGGTGGGATGAGCTCTCGCTCTATTCGC--TTCCA-------GGGA-CACATCTGCTCCGTTACCAGATCGAATTA----T-CCCGGGGGCAGGGTCGGTGTGTTATTGC-CGGCGTCTTCTTTGTGATATGTACACTGGTGTAATCCATTTACGGCAATCGAGA-----TCTTCTG----TACAT--------------------------------GGCGAAGAGGCATGAGTACCAacttgttatttttatttgcaaaGTGT------CACAGAT-----------GTGCGGTAATTTGCGGCGCAAAGC
i caeJap4.Scaffold17545 I 212 I 30

a score=-2571.000000
s ce10.chrX             3202674 12 + 17718866 AGTCGCTACA--GG
s cb4.chrX              8262843 14 + 21540570 GGCTAtttaaagaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   375436  9 -  4500979 GGCTGCT-----AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476607  9 - 33334924 AGGCACA-----AA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1575804  2 +  4147112 ------------GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  198489 30 +   227596 I

a score=104049.000000
s ce10.chrX             3202686 320 + 17718866 CTTGATGACT-CGCTCTTTCA------ATTTTTCATAACTCGGTTGACAC--------G-----ACATCAAAGG----AGACCGACGCGGCT-TGTCTTG-TAACTTGAACAAACTATTTGAAC---TTTTTCTCCGTTTATTTAACAAAGCGGATG--T---GAAAAAA---TA-----GAATGACGATTTGA-------AGGaaaaataaaa---attaattttatCAAATGGAATGCTGCTTTTGTATGAGTTTCTCCGCGGGAACATTTCGTCTTGAGGTATCGTTGGTGGGGGTGCAGTTCTAGTTC--TCCGTCT--GTTCAGAAAACTTGTAGGCCAACACCAACAGTAGAGTCCCAAGAATACTGAAA--
s cb4.chrX              8262857 308 + 21540570 gaagatgaga-catgtttcca-------tttttcataact-atttgaaa---------a-----acttcaaagggAGAATACCGA--------CTTCTTG-TGGCCTTAACA-TTTGTTTGAAC---T---------TTTATTCAGCGTA-------------AAACACAAGGAGGTTGTAAGTGAAGTGATTGCATGAGTGTGAGAAGTAATA------AGTTTAATCAAAAGGAATACTGCTTTTGTAGGAGTTTCTTCGCGGGAATATTTCATCTTGTGAGATCACTGGCGGGGGTGCAGTAC--GGTTCATCCGTTT--GTTGAGACGGCTCGACGGCCAACACCAGCAATACAGTGcgatgaaaactgaaa--
i cb4.chrX              C 0 I 1666
s caeRem4.Crem_Contig0   375445 319 -  4500979 GACGATGACG-cgctctttcattttttttttttcataatt-tcttgaGAAC-------A-----ACTTCAAAGG----ACACCGACAACTCT-CGTCATG-TAACCTCAATA-TTTGTTAGAAC---T---------TTTATTAAGAATATAGGTTA--TGgtagaaataagaaa-----aagtggagtGTTCA-------ATGGGAAATAATACATTTTAATTTAATCAAAGGGAATACTGCTTTTGTACGAGTTCCTTCGCGGGAACATTTCATCTTGAGAGATTATTGGAGGGGGAGCAGTAC--GTTT------TTG--ATTCAACCTGCTTGTAGGCCAACACCAGCAATACAGCCCGatgaatactgaaa--
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold629   476616 321 - 33334924 GATGACGATGACgctctttca------atttttcataa----ctcAACATAGCGAGTGA-----ACTTCAAAGG----ATACCGACCACTCA-TGTCTTGTTAAcctcagaa---aaattgaacttttt----tccgtttatttgaagaaaaagatt--t---gaacaaaag-ag-----aaatggatagttag-------atgaaaaagaatacatTTGAGTTTAATCAAAGGGAATACTGCTTTTGTAGGAGTTCCTTCGGGGGAACATTTCATCCTGAGATATCACTGGAGGGGGAGCG------GTTT--TCCTTTC--GTTCAATCTACTTGTTGGCCAGCACCAACAGTATAAACCGATGAGTACTGAAA--
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1575806 321 +  4147112 GACGATCGTg--gttgtttca------atttttcataa----cttgAGAAAGAGAATGACGAGGGCTTCAAAGG----GTACCGACTAGCCATTGTCGAGGTCAACTTTAGA---AAGTTCAAC---TT----TCAATTtatttaagaaaaaagttg--t---taagaGA---AG-----AAGTGGATGGTTGG-------ATGACAATACATA-----GAGTTTAATCAAACGGAATACTGCTTTTGTAGGAATTTCTTCGAGGGAACATTTCATCTTGAGATATTATTGGAGGGGGAGCacgac--gtct--tcttttcttgttcaGCATACTCGACGGCCAGCACCAACAGTAGAGCGCCAGgaatactggaa--
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold17545  198519 282 +   227596 CATGATGACA-cgcttttctc------atttttcacaaCTCGC---------------C-----ACTTCAAAGG----AAAC------GCCG-CTTTATG-------AGACA---------------TG--------tttatttgagaaaaaaaatgatt---gaaaaagcGTGA-----AAATGA---------------GAGACAGATTGTT-TCGCACGTTTAATCAAACGGAATACTGTTTTTGTAAGAGTTCCTTCTGGGGAATATTTCATCTTGAGAGATCATTGGAGGAGGTGCTGTACGACGTC--TTCTTTT--GTTCATCCGGCTGTTGGGCCAACACCAACAGTACAACCACAGTAATACTGTAAAA
i caeJap4.Scaffold17545 I 30 C 0

a score=-1518.000000
s ce10.chrX             3203006 16 + 17718866 TGTTATGAACTTTTTG
s caeRem4.Crem_Contig0   375776 14 -  4500979 AGCCTTGAA--TTCTT
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0      1576148 10 +  4147112 AACCATGAA------C
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17545  198801 16 +   227596 AGTGATcatgtttttg
i caeJap4.Scaffold17545 C 0 I 4
e cb4.chrX              8263165 1666 + 21540570 I
e caeSp111.Scaffold629   476937  3 - 33334924 I

a score=-210.000000
s ce10.chrX             3203022 10 + 17718866 CGATCAGAAT
s caeRem4.Crem_Contig0   375790 10 -  4500979 TGATAAATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1576158 10 +  4147112 CAAAAAGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  198817  4 +   227596 I
e cb4.chrX              8263165 1666 + 21540570 I
e caeSp111.Scaffold629   476937  3 - 33334924 I

a score=-13915.000000
s ce10.chrX             3203032 68 + 17718866 T------------------------AAACGTTTTTTCAAAAG--TATTTCTCAAA--AACAAATAAAAAGTTATG----TTTT-------CATTTCTCTGAATTAAA
s caeRem4.Crem_Contig0   375800 50 -  4500979 ACAGTAGGC----------------ATGATTTCTACAAATGA--CATT-----GA--AAC-----CGTAGCCC---------------------------AAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476940 47 - 33334924 -------------------------GAAGATTCTTCTAATGA--TATT-----AA--ACCAAGTACAATGTTC--------------------------GAATCAGA
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1576168 73 +  4147112 TCAAAGAACTTGGGATCGGAAGGAGagaggtttttcaaaaaatgtatc-----aa--aacaATCACCAAACTT---------------------------AATTTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  198821 75 +   227596 -------------------------ttaACATTTTGACAAAA--TACC-----AAGTAACAAGTACAAAATTagggaaattttctaaaagcgtttttctcatttaaa
i caeJap4.Scaffold17545 I 4 T 314
e cb4.chrX              8263165 1666 + 21540570 I

a score=-12024.000000
s ce10.chrX             3203100 89 + 17718866 GCCCCTCGAGAACTGAAAAAAATATAGATGGATAAA-TGATATTTTATCAAAATGAGGACTCATAATATTACATAGTTGAAGAAAATACT
s caeRem4.Crem_Contig0   375850 48 -  4500979 AACATGTACATTTTAG-----------ATCGGTAAG--TCTAATTTATCATA--------------------------TACTATACC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476987 52 - 33334924 AGTATTAAACAGTcgg------------tcgaaaaaaaattaatggaTTAGA--------------------------GAGAAAAGCGAT
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1576241 78 +  4147112 GGAATTCAGAACTTgg-----gttttcattgaaaaattttggtagCATTGGA---AGTGTCCATGATGATAC----TTAAGAAAAGTTCT
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=375.000000
s ce10.chrX             3203189 38 + 17718866 --AAACACAATTATACAGAAAACAAACAGAAAAATTATTT
s caeRem4.Crem_Contig0   375898 24 -  4500979 ATACACAtaatga----------------aataattattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477043 20 - 33334924 --AAACACAATT------------------CCAATCATTC
i caeSp111.Scaffold629  I 4 C 0
e caePb3.Scfld02_0      1576319 55 +  4147112 I
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=-25447.000000
s ce10.chrX             3203227 125 + 17718866 GAACAGGTTCA---------------------------AAGTTTTTGGATTGCTAGGGAAAAAGGTAAAAATTTTTGTTAGATGACC---------CAAAACTTAAAAATTCGTGAATGGAGAAAAACTATTGT-TCGATAATCGG--------------CTAGATAAAATT------------CCAA
s caeRem4.Crem_Contig0   375922  86 -  4500979 ----------------------------------------------cacGT------------------TGTGCTTGTTTTCTAACGGttcaaaatcagga---aaacgtTCATAAAGAAAGTTTAACACGTAA-----------A---------------------ATATTGGGTACTTGATAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477063  64 - 33334924 ---------------------------TACTAA-----Tacttttcgacat------------------ttttatcatttaaT---------------------------------------TATAGCCAGTGA---------CGA--------------CAAGATCAAACTa-----------cca-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1576374 165 +  4147112 AGAcagtttccattttgaatttgtatttACTGAATGTCGACTTCTCCATatggcagaaaaaaattcacgttTTTTCGGTTATTAGCCGT----------------AACTTTC----TGGAGGTTTGACAAATGAATCG--AGTCGAACTCACTTGCTTTTCTAGATTAAGTTAAGTACTAGGTTCCA-
i caePb3.Scfld02_0      I 55 I 37
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=-2888.000000
s ce10.chrX             3203352 26 + 17718866 AAAAAGATAAAGCACTGGTCAA---GTGT
s caeRem4.Crem_Contig0   376008 16 -  4500979 ---------AAGCTCTTATGAACAt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477127  3 - 33334924 -------------------aaa-------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1576539 37 +  4147112 I
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=-3077.000000
s ce10.chrX             3203378 14 + 17718866 GGATTTTTCTAG------------TC---
s caeRem4.Crem_Contig0   376024 14 -  4500979 ggtttttgataa------------tt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477130  5 - 33334924 ------------------------ttcta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1576576 29 +  4147112 AGACTTTTATGactcttttcattattttg
i caePb3.Scfld02_0      I 37 C 0
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=-99.000000
s ce10.chrX             3203392 2 + 17718866 CA
s caeSp111.Scaffold629   477135 2 - 33334924 aa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1576605 2 +  4147112 cG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I
e caeRem4.Crem_Contig0   376038 0 -  4500979 C

a score=-3149.000000
s ce10.chrX             3203394 15 + 17718866 TACAACAAA------------------AAAAAA-
s caeRem4.Crem_Contig0   376038 15 -  4500979 tttaaaaag------------------atgaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477137 15 - 33334924 ttcaaaaa-------------------atcagta
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1576607 34 +  4147112 CTTAATAAACTCTCTATTAGTTCAATTATCAGCA
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8263165 1666 + 21540570 I

a score=16006.000000
s ce10.chrX             3203409 59 + 17718866 ACTTACATGTGAATATAATAATACACGACAAACAGCTGATAACGAGAGTTCTATCATGA
s cb4.chrX              8264831 59 + 21540570 aCTCACATACAAACAGGATGATACATGATGAGCAATACGTTAACAGCCAGATGCCGTCC
i cb4.chrX              I 1666 C 0
s caeRem4.Crem_Contig0   376053 59 -  4500979 actcACGTGTAAATAGTACAATGCATGCGATGCAACAGAAGAAAAGAACGCCCTCATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477152 59 - 33334924 acTCACTCATGAATATTATGATACAAGCCAAACAGCACCAGAGAAGAGCTGTATCATTA
i caeSp111.Scaffold629  C 0 T 435
s caePb3.Scfld02_0      1576649 59 +  4147112 ACTCACATGTGAATATCAGGATGCACGACATACAACATATGATAAGAACCCCTTCGTTC
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17545  198896 314 +   227596 T

a score=36265.000000
s ce10.chrX             3203468 208 + 17718866 ATGGGGAACATGAAACACGAAGGTTTGTAGGA---TCTCATGTACGGAAAAGTGCAGTAGTATTGGTAGTAGGGCGGGTCGCTTGG-------AAAAAAGTTGGGTAACCTGCAAAAAAAA--GGCATTTCTTGTAGTTCGCAAATTCGATTCGAACTTCGTATTTTCAACAGA-------TTTATTCTAAACT----GTAAATATATTTTTTGT---TGATACCAAATTTGAA
s cb4.chrX              8264890 223 + 21540570 GTCGGAAGCATACAACAAGATGGTTTATAGGA---TTTTAAATAAGGAAATGTACAGCAATATTTGTAGTGCGACGGATCACTCGGTCCTGGACAGAATGCTGGGTAACCTGGAAAATATTTGAttatttggtttttctttAGAAATTA-----GACTTCCGCATTCGCCcacaaagtttttttctgttatctATTGGGTAAACATCATTATTTT---TGATGCCAACTTAGGA
i cb4.chrX              C 0 T 2104
s caeRem4.Crem_Contig0   376112 225 -  4500979 ATTGGAAACATGCAACAAGAAGGCTTGTAAGACCCCCCTAAGTACGGAAATGAGCAACAATATTTGTAGTGTGGTGGATCACTCGGTCCCGGACAAGACGCTTGGTAACCTGAAAACAGTC--AttatttgattcttttttgcAGGTTACTTCTGACTTCCGCGTTCGCCcaca------cttttttttatctTTATGGTAAACACTATTGTTTTCTGTATTGCCAACCTAGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1576708 189 +  4147112 ATCGGAAACATGCAACAAGACGGTTTGTACGA---TCCAAGGTACGGAAAAGAGCAACAATATTTGTAGTGTGGTGGATCACTCGGTCCCGGACAAGACGCTGGGTATcctgaaaacaatc--aacatttgaatttttcc--aaagttaaTTAAAACTTCCGCGTTCGCCCACA-------CTTTTGTCATCCT------------------------TAATGtcaa-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  198896 314 +   227596 T
e caeSp111.Scaffold629   477211 435 - 33334924 T

a score=-167.000000
s ce10.chrX             3203676 4 + 17718866 TAGA
s caeRem4.Crem_Contig0   376337 4 -  4500979 TAGA
i caeRem4.Crem_Contig0  C 0 T 736
s caePb3.Scfld02_0      1576897 3 +  4147112 cag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8265113 2104 + 21540570 T
e caeSp111.Scaffold629   477211 435 - 33334924 T

a score=1499.000000
s ce10.chrX             3203680 131 + 17718866 TTTTAGTTTGTTGTTAAGATGCGCTGATAAAATGAGACATAAAAAAT------GCTCAAAGGGCTCATCACAATTCTAAATGTTT---CATAAGAATTACACAAGTAAATTATAAAAGTATCT--TTATAAGGTTTGGTTTT
s caePb3.Scfld02_0      1576900 128 +  4147112 -ttttgttttttttcaaa------tgccaAAGTgatacaaaaatgatttttcggttcTAAGGG-------TAATTTGTAGTGATTTGACATTATGGATGaacatgaaaattttaaaactagtgaattgtaatttttggtttt
i caePb3.Scfld02_0      C 0 T 1053
e caeJap4.Scaffold17545  198896 314 +   227596 T
e cb4.chrX              8265113 2104 + 21540570 T
e caeSp111.Scaffold629   477211 435 - 33334924 T
e caeRem4.Crem_Contig0   376341 736 -  4500979 T

a score=0.000000
s ce10.chrX             3203811 3276 + 17718866  
e caePb3.Scfld02_0      1577028 1053 +  4147112 T
e caeJap4.Scaffold17545  198896  314 +   227596 T
e cb4.chrX              8265113 2104 + 21540570 T
e caeSp111.Scaffold629   477211  435 - 33334924 T
e caeRem4.Crem_Contig0   376341  736 -  4500979 T

a score=956.000000
s ce10.chrX             3207087 43 + 17718866 GAGATGGTTATTTAACAAAGCGGATG--TAAAAAATAGACTTGAA
s caeJap4.Scaffold17545  198582 42 +   227596 GACATGtttatttgagaaaaaaaatgattgaaaaa---gcGTGAA
i caeJap4.Scaffold17545 T 314 C 0
e caePb3.Scfld02_0      1577028 1053 +  4147112 T
e cb4.chrX              8265113 2104 + 21540570 T
e caeSp111.Scaffold629   477211 435 - 33334924 T
e caeRem4.Crem_Contig0   376341 736 -  4500979 T

a score=302.000000
s ce10.chrX             3207130 2 + 17718866 AG
s caeSp111.Scaffold629   476776 2 - 33334924 aa
i caeSp111.Scaffold629  T 435 C 0
s caeJap4.Scaffold17545  198624 2 +   227596 AA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577028 1053 +  4147112 T
e cb4.chrX              8265113 2104 + 21540570 T
e caeRem4.Crem_Contig0   376341 736 -  4500979 T

a score=2102.000000
s ce10.chrX             3207132 9 + 17718866 AAAAATACA
s caeRem4.Crem_Contig0   375605 9 -  4500979 AATAATACA
i caeRem4.Crem_Contig0  T 736 C 0
s caeSp111.Scaffold629   476778 9 - 33334924 aagaataca
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  198626 9 +   227596 TGAGAGACA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577028 1053 +  4147112 T
e cb4.chrX              8265113 2104 + 21540570 T

a score=139.000000
s ce10.chrX             3207141 4 + 17718866 AATT
s cb4.chrX              8263009 4 + 21540570 AATA
i cb4.chrX              T 2104 C 0
s caeRem4.Crem_Contig0   375614 4 -  4500979 TTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   476787 3 - 33334924 -tTT
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold17545  198635 4 +   227596 GATT
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577028 1053 +  4147112 T

a score=116753.000000
s ce10.chrX             3207145 151 + 17718866 --------AATTTAATCAAATGGAATGCTGCTTTTGTATGAGTTTCTCCGCGGGAACATTTCGTCTTGAGATATCGTTGGTGGTGGTGCAGTTCTAGTTC--TCCGTCT--GTTTAGTAAACTTGTAGGCCAACACCAACAGTAGAGTCCCAATAATACTGAA
s cb4.chrX              8263013 151 + 21540570 --------AGTTTAATCAAAAGGAATACTGCTTTTGTAGGAGTTTCTTCGCGGGAATATTTCATCTTGTGAGATCACTGGCGGGGGTGCAGTAC--GGTTCATCCGTTT--GTTGAGACGGCTCGACGGCCAACACCAGCAATACAGTGcgatgaaaactgaa
i cb4.chrX              C 0 I 1667
s caeRem4.Crem_Contig0   375618 145 -  4500979 --------AATTTAATCAAAGGGAATACTGCTTTTGTACGAGTTCCTTCGCGGGAACATTTCATCTTGAGAGATTATTGGAGGGGGAGCAGTAC--GTTT------TTG--ATTCAACCTGCTTGTAGGCCAACACCAGCAATACAGCCCGatgaatactgaa
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold629   476791 145 - 33334924 --------AGTTTAATCAAAGGGAATACTGCTTTTGTAGGAGTTCCTTCGGGGGAACATTTCATCCTGAGATATCACTGGAGGGGGAGCG------GTTT--TCCTTTC--GTTCAATCTACTTGTTGGCCAGCACCAACAGTATAAACCGATGAGTACTGAA
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1575975 151 +  4147112 --------AGTTTAATCAAACGGAATACTGCTTTTGTAGGAATTTCTTCGAGGGAACATTTCATCTTGAGATATTATTGGAGGGGGAGCacgac--gtct--tcttttcttgttcaGCATACTCGACGGCCAGCACCAACAGTAGAGCGCCAGgaatactgga
i caePb3.Scfld02_0      T 1053 C 0
s caeJap4.Scaffold17545  198639 159 +   227596 GTTTCGCACGTTTAATCAAACGGAATACTGTTTTTGTAAGAGTTCCTTCTGGGGAATATTTCATCTTGAGAGATCATTGGAGGAGGTGCTGTACGACGTC--TTCTTTT--GTTCATCCGGCTGTTGGGCCAACACCAACAGTACAACCACAGTAATACTGTA
i caeJap4.Scaffold17545 C 0 C 0

a score=1446.000000
s ce10.chrX             3207296 3 + 17718866 ATA
s caeRem4.Crem_Contig0   375774 3 -  4500979 ATA
i caeRem4.Crem_Contig0  I 11 I 1
s caeSp111.Scaffold629   476936 3 - 33334924 ATA
i caeSp111.Scaffold629  C 0 I 272
s caePb3.Scfld02_0      1576126 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  198798 3 +   227596 AAA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8263164 1667 + 21540570 I

a score=-1338.000000
s ce10.chrX             3207299 4 + 17718866 ----GTTT
s caeRem4.Crem_Contig0   375778 4 -  4500979 ----CCTT
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      1576129 4 +  4147112 ----attt
i caePb3.Scfld02_0      C 0 I 516
s caeJap4.Scaffold17545  198801 6 +   227596 AGTGAT--
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939 272 - 33334924 I

a score=884.000000
s ce10.chrX             3207303 34 + 17718866 GAACTTTTTATTTAGtattactggttagcaagat
s caeRem4.Crem_Contig0   375782 32 -  4500979 GAATTCTTTGATAAATA--AACAGTAGGCATGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17545  198807 32 +   227596 catgtttttgtttgtta--ACATTTTGACAAAAT
i caeJap4.Scaffold17545 C 0 I 3407
e caePb3.Scfld02_0      1576133 516 +  4147112 I
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939 272 - 33334924 I

a score=196.000000
s ce10.chrX             3207337 8 + 17718866 cacttcaa
s caeRem4.Crem_Contig0   375814 8 -  4500979 TTCTACAA
i caeRem4.Crem_Contig0  C 0 I 228
e caePb3.Scfld02_0      1576133 516 +  4147112 I
e caeJap4.Scaffold17545  198839 3407 +   227596 I
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939 272 - 33334924 I

a score=0.000000
s ce10.chrX             3207345 1125 + 17718866  
e caePb3.Scfld02_0      1576133  516 +  4147112 I
e caeJap4.Scaffold17545  198839 3407 +   227596 I
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939  272 - 33334924 I
e caeRem4.Crem_Contig0   375822  228 -  4500979 I

a score=168.000000
s ce10.chrX             3208470 4 + 17718866 TTCA
s caeJap4.Scaffold17545  202246 4 +   227596 TTCC
i caeJap4.Scaffold17545 I 3407 C 0
e caePb3.Scfld02_0      1576133 516 +  4147112 I
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939 272 - 33334924 I
e caeRem4.Crem_Contig0   375822 228 -  4500979 I

a score=409.000000
s ce10.chrX             3208474 3 + 17718866 AAC
s caeRem4.Crem_Contig0   376050 3 -  4500979 aaa
i caeRem4.Crem_Contig0  I 228 C 0
s caeJap4.Scaffold17545  202250 3 +   227596 AAA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1576133 516 +  4147112 I
e cb4.chrX              8263164 1667 + 21540570 I
e caeSp111.Scaffold629   476939 272 - 33334924 I

a score=18409.000000
s ce10.chrX             3208477 59 + 17718866 ACTTACATGTGAATATAATAATACACGACAAACAGCTGATAACGAGAACACCATCATGT
s cb4.chrX              8264831 59 + 21540570 aCTCACATACAAACAGGATGATACATGATGAGCAATACGTTAACAGCCAGATGCCGTCC
i cb4.chrX              I 1667 C 0
s caeRem4.Crem_Contig0   376053 59 -  4500979 actcACGTGTAAATAGTACAATGCATGCGATGCAACAGAAGAAAAGAACGCCCTCATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1576649 59 +  4147112 ACTCACATGTGAATATCAGGATGCACGACATACAACATATGATAAGAACCCCTTCGTTC
i caePb3.Scfld02_0      I 516 C 0
s caeJap4.Scaffold17545  202253 59 +   227596 ACTTACGAGCAAACAAAACAATGCACGCTAAGCAGCAAGTGATAAGGACTCCTTCATGC
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   476939 272 - 33334924 I

a score=80110.000000
s ce10.chrX             3208536 211 + 17718866 ATGGGGAACATGCAACACGAGGGTTTGTAAAA---TCCCAAGTACGGAAAAGTGCAGCAATATTGGTAGTAGGGCGGGTCGCTCGGACCTGGGCAAGATGCAGGGTAACCTG--AAAAAAATTGCTTTAGTTGGCAATTTC---------------AATT---CG-AACTTCCGCTTTTTCTTCCCACA--------AGCTTTAATCTAAACTGTAAACAT--------------AATTTTTT-------------GTTGATACCAATTT
s cb4.chrX              8264890 219 + 21540570 GTCGGAAGCATACAACAAGATGGTTTATAGGA---TTTTAAATAAGGAAATGTACAGCAATATTTGTAGTGCGACGGATCACTCGGTCCTGGACAGAATGCTGGGTAACCTG--GAAAATATTTGAttatttggtttttctt------tAGAAATTA---------GACTTCCGCATT---CGCCcacaaagtttttttctgttatctATTGGGTAAACAT--------------CATTATT--------------TTTGATGCCAACTT
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig0   376112 210 -  4500979 ATTGGAAACATGCAACAAGAAGGCTTGTAAGACCCCCCTAAGTACGGAAATGAGCAACAATATTTGTAGTGTGGTGGATCACTCGGTCCCGGACAAGACGCTTGGTAACCTG--AAAACAGTC--Attatttgattcttttt------tgcAGGTTACTT---CT-GACTTCCGCGTT---CGCCcaca------cttttttttatctTTATGGTAAACAC--------------TATTGTT--------------TTCTG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477211 224 - 33334924 ATTGGAATCATGCAACAAGATGGTTTGTATGA---CCCCAAATATGGAAATGAACAGCAATATTTGTAGTGTGGTGGGTCACTCGGTCCTGGACAGAACGCTTGGTatcctgaaaaaacaata--aaaactttatttttgc----------aAGTGAGTTTAGAT-GACTTCCGCGTT---CGCCTACT-------CCTTTGTTATCTCAAATACAAACAC--------------TGATGTTCTTTCTCGATGCCACTTAATAT------
i caeSp111.Scaffold629  I 272 I 71
s caePb3.Scfld02_0      1576708 186 +  4147112 ATCGGAAACATGCAACAAGACGGTTTGTACGA---TCCAAGGTACGGAAAAGAGCAACAATATTTGTAGTGTGGTGGATCACTCGGTCCCGGACAAGACGCTGGGTATcctg--aaaacaatc--aacatttgaatttttcc--------aaagttaaTT---AA-AACTTCCGCGTT---CGCCCACA-------CTTTTGTCATC-------------------------------------------------CTTAATGt------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17545  202312 241 +   227596 ACCGGATATCTACAGCATGAGCCTTGGTAGGAACCACCCAAGTATGGAAAGGAACAGCAATATTTGTTGGCTGACGGGTCACTTGGTCCTGGACAAGATGGTGGGTatcctg--aaaataaat--aaaaataaaaaattatcacAGTTTCCATTTCATTT---CTCAACTTCCGCATT---CGCCCACC-------TCGCAGTCATCTTTAAAATAAACATGAGGGGGCTTATCGTAtttttttGTAGTTACATA-TTT-----------
i caeJap4.Scaffold17545 C 0 I 644

a score=0.000000
s ce10.chrX             3208747 6 + 17718866 CAAAAT
e caePb3.Scfld02_0      1576894 5 +  4147112 I
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I
e caeRem4.Crem_Contig0   376322 0 -  4500979 C

a score=-2303.000000
s ce10.chrX             3208753 37 + 17718866 TTGTTTAGGTTTGT---TATTGCAAAACG-CTGGTAAAATG--------
s caeRem4.Crem_Contig0   376322 31 -  4500979 -----------------TATTGCCAACCT-AGATAGAACTGATAGTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1576899 39 +  4147112 --gttttgttttttttcaaatgccaAAGTgatacaaaaatg--------
i caePb3.Scfld02_0      I 5 I 19
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I

a score=-220.000000
s ce10.chrX             3208790 27 + 17718866 AGGAAATATATGTATACGACAGATAAA
s caeRem4.Crem_Contig0   376353 18 -  4500979 atcaaat---------tgaaagaaagG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1576938 19 +  4147112 I
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I

a score=-8891.000000
s ce10.chrX             3208817 180 + 17718866 AATATGTGAAAAAGTCAAAACAGTGAATTGA--ttaattattgtggtag--catggacgttttttaaaagcaatttctccgctggagctactCTTTTTTTAAACCAGTAATAATACTTATTTCTAATTTTGcatgtggtgtcagaatgtcccatttcggtttgatctccgagatttgcgggaat
s caeRem4.Crem_Contig0   376371  94 -  4500979 ------TGCATCAG--AAAACATTAA--TGAAGTATAACTTAGTGAATT--CCTAGA--------------AATTATATCATTCGAGTTAT-----------------------------------------------TGTCAGA-----------------AAATTACTATTTCTGAGGGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1576957  79 +  4147112 -----------------AATTTGTAG--TGA--TTTGACATTATGGATGaacatgaa--------------aattttaaaactagtg-aat-----------------------------------------------tgt---------------------aatttttggtttttcagaaag-
i caePb3.Scfld02_0      I 19 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109  85 + 21540570 I
e caeSp111.Scaffold629   477435  71 - 33334924 I

a score=-1041.000000
s ce10.chrX             3208997 84 + 17718866 tacgacgcatcaagacacagacctttcaattgattttgcttggttaagattttgctgacgccacattatttggaaaaaaattcc
s caePb3.Scfld02_0      1577036 25 +  4147112 -----------------------------------------------------------gcCACACTCCTTTAGGAACAGTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I
e caeRem4.Crem_Contig0   376465  0 -  4500979 C

a score=0.000000
s ce10.chrX             3209081 19 + 17718866 cgcgttttttgtagatcaa
e caePb3.Scfld02_0      1577061  0 +  4147112 C
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I
e caeRem4.Crem_Contig0   376465  0 -  4500979 C

a score=-616.000000
s ce10.chrX             3209100 88 + 17718866 accgtgataagacaacccgccaccacgtgATTTTGTTTCTAAACTAATATGAGCCGAAAAATCTGCATTGCACAATTTTTAAATAGAT
s caeRem4.Crem_Contig0   376465 56 -  4500979 ACTGCAATCAGActatct------------tttt--------------------cagaaaaacgtcTTCAAAGAATGTAGAAAGTGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1577061  0 +  4147112 C
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I

a score=38.000000
s ce10.chrX             3209188 1 + 17718866 C
s caeRem4.Crem_Contig0   376521 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1577061 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I
e caeSp111.Scaffold629   477435 71 - 33334924 I

a score=615.000000
s ce10.chrX             3209189 4 + 17718866 CAAC
s caeRem4.Crem_Contig0   376522 4 -  4500979 TTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477506 4 - 33334924 catc
i caeSp111.Scaffold629  I 71 C 0
s caePb3.Scfld02_0      1577062 4 +  4147112 CAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I
e cb4.chrX              8265109 85 + 21540570 I

a score=-693.000000
s ce10.chrX             3209193 205 + 17718866 ------AAAAATATAATTCCAAAAAATAAAATTGGGAAAACTCCTCC---------AAAAATAGGACTTTCCATTTAAAAT----------AGAAGACAGTTGATACCTCAATAGGTACATTCCATGTCAGAGAATGTGCCGAAAAGCGTT---CATTCTATTGACACTTTGTTCTTTAG-AAATATTTGAAAAGGGTG-AGGACA---------TTAGAAACATGACTGGAAAGTTGATACAT---------------------------------------
s cb4.chrX              8265194 208 + 21540570 ------agaaatctgattttccaaaaaaaa---gggagaaattCTTC---------AAAGA-------CACTGTT----------------TGATGACAACTGATACCTCAAAAGGTGTGTTTTATTTCTCGGAATGTGCCGAACGGTGTT----TTTCTATTGACAAACAGTT-TTCAATAGAAATTGGGAGAAAGGATGGAAAG----AATGGTTTGGAATGTATCT------TGAAGAAAAAggataattg--------------aaaaaagaga-----
i cb4.chrX              I 85 C 0
s caeRem4.Crem_Contig0   376526 205 -  4500979 ------AGGCATTTAATCT----------------------GTTTTC---------------------TGCTTTT----------------AAATGTCATGTGATACCTCTATAGGTGCATTT--TTTCAAGGAATGTGCCGAGAAACATT----GTTCTATTTACAAACAGTtcttgaaaagaaacattaagaaatttttgagtgcgtcaatagaatgagaaaaattt------tagataaaaa-tattattgttgcgaaaaacaccaaaaatgaaaatcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477510 206 - 33334924 gaaaatagaaacttga-aaacaagagaaa----------------tccgaaaatcaaaagaaacaatttgttatttgaagaaaaaaggtcgaaaagaCAGATGATACCTCTATAGGTGCATTT-AGTTCTCACTGAATGCCGAAAACGTTT----CTTCTATTGACACAATGTcctttag-aaaaatttgaaaacattccaGAACA---------TTAGGAATGTGACA------TGAATACat---------------------------------------
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_0      1577066 171 +  4147112 AAGGAAAAGAATTAGATTtgcaagaaaaa----------------tc---------aaaga------------------------------aaaagacagaTGACACCTGAATAGGTGCTTTT-AGGTCTTAGAATGTGCCGAGAACATTTTTCCCTTTTGTTGACATTTCGTTCTTCAG--AAACTTTGAGAATATTGAAGAACG---------TTTGGAATGCAAca------tagaaatag---------------------------------------
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17545  202553 644 +   227596 I

a score=-7574.000000
s ce10.chrX             3209398 43 + 17718866 TCCCTTCAGGCAGATTTTT-TTTTATT-------------TTCAATGTTATGCCGTC---------
s cb4.chrX              8265402 53 + 21540570 -----------gcatTTAT--GTTTTTAGAAGTAATGCACATCAATGTTTGAACCACACAGGTGgc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   376731 41 -  4500979 ----------tgaatttatccgttttt-------------ttttgtttttgacgcTGACACGT--c
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1577250 29 +  4147112 -----------atgattgt-cattttt-------------gtccattttgtATC------------
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I
e caeSp111.Scaffold629   477716 15 - 33334924 I

a score=-20445.000000
s ce10.chrX             3209441  72 + 17718866 -----AAAAAATTTTTTCACTGTGAATTTACATTTATTGACTCAAAAAAAAAACATTATTTT-----------------------------------------AATCAC--------AAAAATGAA
s cb4.chrX              8265455 106 + 21540570 aatccagaaaaaa-------tacaaaaaa-------------cacaaaaaaaagttggattttCTTGAATCATTTTGTTTATTCCCCTCATCCATATGCTTCCAaccaaaactacaaaaaactgAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   376772  31 -  4500979 agatcaacaaaa---------------------------------aaaaagaaat--------------------------------------------------------------aaaatagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   477731 110 - 33334924 -----aagaaattgTTCCATTGTGAAATacaa-------atgaatagaaaaaacaataattatttttacttCTCATTGCAAAACCCGCTATCAA----ACATCAACCCTGAAcactaaaaaaacaa
i caeSp111.Scaffold629  I 15 C 0
s caePb3.Scfld02_0      1577279  64 +  4147112 ---------AAAAGTGCCATTgcgatttc-------------aacaaaaaaaattctaat-------------------aaaa--------------------aaCTCT-AACacaaagaattcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  202553 644 +   227596 I

a score=173894.000000
s ce10.chrX             3209513 262 + 17718866 A------CTAACCATGTCCTCCTTCACACCAGTTGATATCCCGTTTCTGAAGAACGCGCATGAAATTGGAATCCATATC-----TTTGCCTAGGTGAAGAA-----CGCAA-AGAATAGA-TGCTA-----GGTGTAGCACAATAGGTAACCATGTGGGCAAAAAAT--TGAGAAGGGAGAGGAA--AAGGAAAGGTGCGGTC-GTTGTGCAAACAAGATATGAGGTCGAATGTCTTCGGCGGTAAACACCCATGGA---CCGAGTG----------------TGGACAGCTCAGCATTCAGGCAAATC
s cb4.chrX              8265561 254 + 21540570 G------CTCACCATGTCCGCTTTCGCACCAGTTGACATCTCGTTTCTGTAGAACGCGCATGAAATCCGAAGACATGTTCACAAGGATC-----------------GGCAATCGAATAGAGGGCTA-----GGCGTAGCACAATAGGTAACCATGTGGGCAAAAAAT--TTGTGGAGAGAGGGAA-AGAGAGAAGGTGCGGTC-GTTGTGCAAATAAGATATCAGGTCGAATGTCTTCGGCGGTAAACA-TCATGGACCGCCGACTGGCCAAAACAGACCGCACCGA----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   376803 276 -  4500979 g------CTCACCATGTCCTCCTTCACACCAGTTGATATCCCGTTTCTGAAGAACGCGCATAAGATCCGAGGACATATT-----GAATCCGCCGACTGAGG----TGGCAA-AGAATGGA-GGCTA-----GGTGCAGCACAATAGGTAACCATGTGGGCAAAAAAT--TGGGgagggaaaagga-aaaggaaaggTGCGGTC-GTTGTGCAAATAAGATATCAGGTCGAATGTCTTCGGCGGTAAACA-CGATGGA---CCGACTGGCCAGAACAGA---GACCGACAGCTCAACATTCGGGCATTTC
i caeRem4.Crem_Contig0  C 0 I 163
s caeSp111.Scaffold629   477841 268 - 33334924 a-aaaaactcaccatgTCCACTTTCACACCAGTTGACTTCCCGTTTCTGAAGAACGCGCAGGAGATCCGAGGACATATT-----GAATCTGAGG---------------AAACGAATCGA-GGCTA-----TGCCGAGCACAATAGGTAACCATGTGGGCAAAAAAT--TGAGGAGGGGAAGGGG--AAAGGAAGGTGCGGTC-GATGTGCAAATAAGATATCAGGTCGAATGTCTTCGGCGGTAAACA-CAATGGA---CCGACTGGCCAAAACAGA-----CCGACAGCTCAACGATCAGCCAATTG
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1577343 281 +  4147112 attcatacTCACCATGCCCACTTTCACACCAGTTGATTTCCCGCTTTTGGAGAACACGCATCAGATCAGAGGACATATC-----GAATCCCGGAACGGCTA-----GACAGAAGAATGGG-GACTA-----TGCGTAGCACAATAGGTAACCATGTGGGCGAAAAAT--TGgggaggagaaagagaaaaagaaaggtgCGGTC-GTTGTGCAAATAAGATATCAGGTCGAATGTCTCCGGCGGTAAACA-TTATAGA---CTGACTGGCCAAAACAGA-----CCGACAGCTCAACGATCAGGCAATTC
i caePb3.Scfld02_0      C 0 I 176
s caeJap4.Scaffold17545  203197 279 +   227596 ------ACTAACCATGACCACTTTCACACCAATTGACTTCTCGCTTTTGCAGCAATCGAATAAGATCCGAGGACATTTA-----AAGTAGGGTGAAAGCGGAAGAAATGAAACGGATAGC-GGCGACTCACTGTTGAGCACAATAGGTAACCATGTGGccaaaaaataacagaaagaGGAGAGAATGAGAGAAGTGTGCGGCCGGTTAAGCAAATACGGTATCAGGTCGACTGTCTTGGGCGGTAAACA-CC--GGA---TCGGCTGGCCAAAACAGA-----CAG---GCTTCGTTTTCTGGCA----
i caeJap4.Scaffold17545 I 644 C 0

a score=0.000000
s ce10.chrX             3209775 7 + 17718866 TCACTGG
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e caeJap4.Scaffold17545  203476 0 +   227596 C
e cb4.chrX              8265815 0 + 21540570 C
e caeSp111.Scaffold629   478109 13 - 33334924 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=703.000000
s ce10.chrX             3209782 12 + 17718866 GAGATGGCACAA
s cb4.chrX              8265815  8 + 21540570 ----CCGCGGCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   478122 12 - 33334924 AAGATAGCAGAA
i caeSp111.Scaffold629  I 13 I 182
s caeJap4.Scaffold17545  203476 12 +   227596 GGAACAGCACAC
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=-132.000000
s ce10.chrX             3209794 9 + 17718866 CAACTTGAA
s cb4.chrX              8265823 8 + 21540570 -AACTCGAA
i cb4.chrX              C 0 I 41
s caeJap4.Scaffold17545  203488 3 +   227596 Caa------
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e caeSp111.Scaffold629   478134 182 - 33334924 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=-1304.000000
s ce10.chrX             3209803 102 + 17718866 AATTTCCCTTTCAATAAAAAATATTTTCATAGAATGGCATATGGAATTAACACAACACACTCAAACAAAATTATTAAATTGTCTAATTGCGTTTAAGATCGC
s caeJap4.Scaffold17545  203491  51 +   227596 ----------------aaaaaCGGT------GCAaggtgtatg----------------------------tatgtatgtatgtatttacATT-ACGATTTC
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e cb4.chrX              8265831  41 + 21540570 I
e caeSp111.Scaffold629   478134 182 - 33334924 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=-24568.000000
s ce10.chrX             3209905 541 + 17718866  
s cb4.chrX              8265872 391 + 21540570  
i cb4.chrX              I 41 I 1
s caeJap4.Scaffold17545  203542 528 +   227596  
i caeJap4.Scaffold17545 C 0 I 2
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e caeSp111.Scaffold629   478134 182 - 33334924 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=-551.000000
s ce10.chrX             3210446 12 + 17718866 AAACACTGTAAG---
s cb4.chrX              8266264 12 + 21540570 AAACATCCATAA---
i cb4.chrX              I 1 I 12
s caeSp111.Scaffold629   478316 12 - 33334924 aaatattactAA---
i caeSp111.Scaffold629  I 182 C 0
s caeJap4.Scaffold17545  204072 15 +   227596 ggacactgtgtaaac
i caeJap4.Scaffold17545 I 2 C 0
e caePb3.Scfld02_0      1577624 176 +  4147112 I
e caeRem4.Crem_Contig0   377079 163 -  4500979 I

a score=1877.000000
s ce10.chrX             3210458 32 + 17718866 ATTTGAA-----ATACAATAAA-ATTTATTCAC-----AAGGA
s cb4.chrX              8266288 37 + 21540570 attttac-----aaaaaatcta-atttattCTCTTCtgaagat
i cb4.chrX              I 12 I 13
s caeRem4.Crem_Contig0   377242 33 -  4500979 attt---------aaaaaatta-ttttattttctggtATAGGC
i caeRem4.Crem_Contig0  I 163 I 3
s caeSp111.Scaffold629   478328 41 - 33334924 AATTAATACacgaaaaaatcta-atttatTCTCT-CTGAAGgc
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold17545  204087 33 +   227596 atttaaa-----caaaaacataTATTTATTCTTT-----AGAA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1577624 176 +  4147112 I

a score=242627.000000
s ce10.chrX             3210490 598 + 17718866  
s cb4.chrX              8266338 511 + 21540570  
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   377278 470 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   478369 477 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1577800 467 +  4147112  
i caePb3.Scfld02_0      I 176 C 0
s caeJap4.Scaffold17545  204120 550 +   227596  
i caeJap4.Scaffold17545 C 0 I 814

a score=-10114.000000
s ce10.chrX             3211088 38 + 17718866 G--AATTGTTAATTTATATTGATTTATTGA--------TTATGTGACA----
s cb4.chrX              8266849 32 + 21540570 a--aa-----aaaatta-----ttcattga--------TTCTCTCAGATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   377748 28 -  4500979 G--CA-----GATAGCT-----TTGGTACA--------ATTCATAAAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   478846 43 - 33334924 ggaaa-----aacgaaacaatatttattgaaaacataCATTCGTTACT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1578267 26 +  4147112 G--AA-----AAcgtaa-------ttttga--------gtttgtgagg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  204670 814 +   227596 I

a score=294.000000
s ce10.chrX             3211126 1 + 17718866 T
s cb4.chrX              8266881 1 + 21540570 C
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   377776 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold629   478889 1 - 33334924 C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1578293 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 156
s caeJap4.Scaffold17545  205484 1 +   227596 T
i caeJap4.Scaffold17545 I 814 C 0

a score=198349.000000
s ce10.chrX             3211127 206 + 17718866 ACCTTAACAATAAGTTTAACATCGGCGACGTCGGGTCCGGAGCCATCGCATAGAATGGGTTGCAATTATCGGGAAGGACAAATTCACCGCCACGTGGCAAAAGTTGCACGAGCAGATACGTATTTTTATCATCCTCTATCAAATGTTTTTCCAACGCTCGAGCTACCAACTGCGGCATTCGATCTCCATTTTCTATCTGAACCAAG
s cb4.chrX              8266894 201 + 21540570 ACCTCAACATCAAATTCAACATTGGCGACGTCGGATCCGGAGCCATAGCATAGAACGGATTGCAGTTGTCAGGCAACACAAATTCACCGCCACGTGGCAAAAGTTGGACGAGcagatatttatttttctcatcgTCTATCAAATGTTTTTCAAGCGCGCGGGCGATGAGTTGAGGCATGCGATCACcgttttcaatctgaa-----
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   377792 206 -  4500979 ACCTTAACAATAAATTTAGCATCGGCGATGTTGGATCTGGAGCCATTGCATAAAACGGATTGCAATTCTCTGGTAACACAAATTCCCCGCCACGAGGCAATAGTTGAACAAGCAGATATTTgttcttttcatcttctatcaaatgtttttctaaTGCTCGAGCTATTAACTGCGGCATTCTATCTCCATTTTCGATCTGAAACAAA
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   478890 206 - 33334924 ACCGTAACAAAAGATTCAACATCGGTGACGTCGGATCTGGAGCCATTGCATAAAACGGATTACAGTTGTCCGGTAACACAAATTCTCCACCCCTTGGTAGTAATTGAACGAGAagatatttgtttttttcatcttctatCAAATGCTTTTCCAATGCTCGAGCGATTAACTGTGGCATTCGATCTCCATTttctatctgaaaaaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1578450 206 +  4147112 ACCTCAACATCAAATTCAACATGGGCGATGTTGGATCGGGAGCCATCGCATAGAATGGATTACAATTATCCGGCAGCACGAATTCACCGCCTCTCGGTAACAGTTGCACAAGAAGATATttgttcttttcatcttctatCAAATGTTTTTCCAATGCTCGAGCAATTAGTTGTGGCATTCGATCTCCgttttcaatctgaaacaaa
i caePb3.Scfld02_0      I 156 C 0
s caeJap4.Scaffold17545  205485 206 +   227596 ACCTTAAAATCAAATTCAACATTGGCGACGTTGGATCAGGAGCCATTGCGTAGAAGGGGTTACAGTTTTCTGGGAGCACAAATTCGCCGCCACGTGGCAAAAGTTGCACAAGCAGATATTTGTTCTTATCATCTTCAATCAAATGTTTTTCCAGCGCTCGATCAATAAGCTGTGGCATACGGTCTCCATTTTCAATCTAAAGAAAG
i caeJap4.Scaffold17545 C 0 I 856

a score=-7053.000000
s ce10.chrX             3211333 30 + 17718866 CAACTCATTTTTTGAT--------CAGAGTAACT--CCAA
s cb4.chrX              8267095 32 + 21540570 -aagttgttttcagaaa-------taggGTCATGCCAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   377998 34 -  4500979 CAATTTGATTTCAGCCACTTTTCTTGATGTAATG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   479096 32 - 33334924 tgccG-AATTGTGGCTAATTTGA-CAGAATAATA------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1578656 32 +  4147112 CAACATAATTGAAGCCACTCTT--CAGGTTCATG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  205691 856 +   227596 I

a score=226285.000000
s ce10.chrX             3211363 254 + 17718866 ATTTGTCTTACCTTAATGCATTTATAATTTGCACCGTCAGTATTCTGAAGATCATCGTCAAGTCCGACTCTTGCTAGATAAAACGAATTTTGTGCTTGCGAATTTCCATTTGCAGAGAGAGAAGATGAAGATGAGCAACTTGAAGCGTCGCTGCCCTTTTTCTGATGTGAAAACACTTTCGAATCGAATACTTCGGCAAGTCGCGTTCTGATAGGTGTAGCACTCCGGGACAGCGATTGGGTTCCACTCTGAAA
s cb4.chrX              8267127 254 + 21540570 TCCTCACTCACCTTTATGCACTTGTAATTTGCCCCATCAGTATTTTGGAGGTCATCATCCAGTCCAACTCTAGCCAAATAAAAGGAATTTTGTGGGGGTGACGATCCATTGGCTGATAAAGATGACGAAGATGAGCAACTGGACGCGTcgcttccttttttctgatgCGAGAAGACTTTAGAGTCAAACACTTCTGCCAATCGTGTCCGGATAGGAGTTGCACTTCTGGATAAAGATTGGGTGCCActctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   378032 250 -  4500979 ----AACTTACTTTTATACATTTATAATTGGCACCATCAGTATTCTGAAGATCATCGTCCAAACCAACTCTTGccaaataaaatgaattttgtgCTTGAGAATTGCCGTTTGCTGAtagagatgaagaagatgagcaACTGGAGGCATCACTTCCTTTCTTTTGGTGGGAGAACACTTTTGAATCGAATACTTCTGCTAGTCGGGTACGGATTGGAGTTGCACTTCGCGATAAGGATTGGGTACCACTCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   479128 250 - 33334924 ----AGCTTACTTTGATACATTTGTAATTGGCTCCATCAGTGTTTTGAAGATCATCATCCAGACCAACTCTTGCCAAATAGAATGAGTTCTGTGCCTGTGAAGATCCATTCGCTGATAAAGACGAGGAAGAAGAGCAACTCGAGGCATCGCTTCCTTTCTTCTGATGAGAGAACACTTTCGAGTCGAACACTTCGGCTAATCTTGTACGGATTGGAGTTGCACTTCGAGACAACGACTGTGTACCACTCTGCAA
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1578688 251 +  4147112 ---TTTCTCACTTTTATGCATTTATAATTGGCTCCATCAGTATTCTGAAGATCATCGTCAAGACCAACTCTCGctaaataaaatgaattttgagtcTGAGATGATCCATTTGCTGATagagaagatgaggaagaacaGCTCGATGcatcacttccttttttctgatggGAGAATACTTTGGAGTCAAACACTTCTGCTAGCCTGGTACGGATTGGAGTTGCACTTCGGGATAATGATTGTGTAccactctgaaa
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold17545  206547 251 +   227596 atattTCATACCTTGATGCATTTGTAGTTAGCACCATCGGTGCTCTGAAGATCATCATCCAAACCAACTCTTGCTAGATAAAAAGAGTTTTGCGCTTGCGAGGAACCATTTGCCGACAAAGACGAAGAGGATGAGCAACTGGAGGCGTCGCTTCCCTTTTTCTGATGCGAGAACACTTTCGAATCAAACACTTCGGCAAGTCGGGAACGAATCGGTGTGGCACTTCGCGAGAGAGACTGCGTTCCACTCTG---
i caeJap4.Scaffold17545 I 856 C 0

a score=-990.000000
s ce10.chrX             3211617 8 + 17718866 ATAA--CAAA
s caeRem4.Crem_Contig0   378282 8 -  4500979 -TCAATTAA-
i caeRem4.Crem_Contig0  C 0 I 221
s caeSp111.Scaffold629   479379 8 - 33334924 Atca--taaa
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold17545  206798 7 +   227596 -TTA--TACA
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1578939 29 +  4147112 I
e cb4.chrX              8267381 0 + 21540570 C

a score=440.000000
s ce10.chrX             3211625 10 + 17718866 AATTTGAATT
s cb4.chrX              8267381  2 + 21540570 --------tt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   479387 10 - 33334924 aattataatt
i caeSp111.Scaffold629  C 0 I 198
s caeJap4.Scaffold17545  206805 10 +   227596 ATTTtgaggt
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1578939 29 +  4147112 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=273.000000
s ce10.chrX             3211635 1 + 17718866 A
s cb4.chrX              8267383 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17545  206815 1 +   227596 a
i caeJap4.Scaffold17545 C 0 I 22
e caePb3.Scfld02_0      1578939 29 +  4147112 I
e caeSp111.Scaffold629   479397 198 - 33334924 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=-717.000000
s ce10.chrX             3211636 218 + 17718866 CCATGTAACTTGAAGTTCAGCGAGTTTCTCATTAAGTGATCTAGTAGATTTTTTGATCAGCCAATTCTTTTTTGATAAAAATTTGGTACTTGTGATTTTTAACCCACaaaattaaatttttaaatcaattttataGGCAAAAGCGTGGATGATTTTTCTATTCTCATGCTTGGGGAATGTCATTTTAAAACCATAAAAAAGGCTATAATGTTTAGTCA
s cb4.chrX              8267384 167 + 21540570 taattta--ttaaaaatgttcaattttttttccaagtgtC-------ATTTTACAATTTGTTGGTTCATTTACAGAAGAAA---AGTAATTGTTttatttctttc------------tttcttattCATTTCA---------------ACCACTTTTCT-------TACAAATAGACCACAATTTTAACACCACAACGAG-----TCATGCTTGGCCG
i cb4.chrX              C 0 I 71
e caePb3.Scfld02_0      1578939  29 +  4147112 I
e caeJap4.Scaffold17545  206816  22 +   227596 I
e caeSp111.Scaffold629   479397 198 - 33334924 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=0.000000
s ce10.chrX             3211854 151 + 17718866 AAATTTATAATTCAATGCATTTTTAATTTAATTTTAACGTGTGTGGTTTTTAATCGAGAGATCGCGGCAATTGGAAGCttatttggaaataggttttgtttaagttgacagatactgaaaattgaaaattgctttacaacaattttggcca
e caePb3.Scfld02_0      1578939  29 +  4147112 I
e caeJap4.Scaffold17545  206816  22 +   227596 I
e cb4.chrX              8267551  71 + 21540570 I
e caeSp111.Scaffold629   479397 198 - 33334924 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=552.000000
s ce10.chrX             3212005 11 + 17718866 tttatcagaaa
s caePb3.Scfld02_0      1578968 11 +  4147112 tttgtttgaaa
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17545  206816 22 +   227596 I
e cb4.chrX              8267551 71 + 21540570 I
e caeSp111.Scaffold629   479397 198 - 33334924 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=-13898.000000
s ce10.chrX             3212016 242 + 17718866 tttcaacagcgattttcaactttatgacaatttttg----agcatttttcaaaatttttcagctgaaacgaatactattttTTATAGCAAGCATTCAAACAGCATGTTCAAATAAAATTTTGCAGTATCATTTTACTTGAACATGGAAAGTTATAACTTTCAGATTTCAGAAAACTATATTTTTCAAATCAAATTATATTTTAAACTAGGTGGTAACAATTTAAAAAAAGTAGTAACAGGAAAAAA
s cb4.chrX              8267622 102 + 21540570 ------------------------tttcgctcgttg--------------------tttttgt-----------ct---ttttttgg----------------------------------------------cat--tagcatcgtattttttga-------------------tgttttcttcgaaaaaccTCACAATTGTTTC-----------AGCTCC---ACATCAATTAAACTA-----
i cb4.chrX              I 71 C 0
s caePb3.Scfld02_0      1578979 193 +  4147112 ------------tccTCAAAAGCGTCACACCTCTTGCGAAATGATGACTCACAACATGCTGGC-----------CTAGCTTTCTCGAAAAAC--TCTTCTGGCCt------------------agtgtcgatttac--gggcaTAGAATTTTCTAggcgtctttttt--------tctcttttctccagtTTATTATAATTATTCACTTAtgatgagagttttgaaacacaaaacataCTAACGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  206816  22 +   227596 I
e caeSp111.Scaffold629   479397 198 - 33334924 I
e caeRem4.Crem_Contig0   378290 221 -  4500979 I

a score=-198.000000
s ce10.chrX             3212258 9 + 17718866 TTGCTTGTA
s caeRem4.Crem_Contig0   378511 9 -  4500979 ttgtttttt
i caeRem4.Crem_Contig0  I 221 C 0
s caePb3.Scfld02_0      1579172 6 +  4147112 ---TTATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  206816 22 +   227596 I
e cb4.chrX              8267724 0 + 21540570 C
e caeSp111.Scaffold629   479397 198 - 33334924 I

a score=-323.000000
s ce10.chrX             3212267 5 + 17718866 ACGTC
s caeRem4.Crem_Contig0   378520 5 -  4500979 tagac
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1579178 5 +  4147112 TTAAC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17545  206838 5 +   227596 ATGAT
i caeJap4.Scaffold17545 I 22 C 0
e cb4.chrX              8267724 0 + 21540570 C
e caeSp111.Scaffold629   479397 198 - 33334924 I

a score=365078.000000
s ce10.chrX             3212272 480 + 17718866  
s cb4.chrX              8267724 485 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   378525 480 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   479595 468 - 33334924  
i caeSp111.Scaffold629  I 198 C 0
s caePb3.Scfld02_0      1579184 471 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545  206843 539 +   227596  
i caeJap4.Scaffold17545 C 0 I 430

a score=-6340.000000
s ce10.chrX             3212752 27 + 17718866 GTTTAAATCGCTTAAAAATAAAAAATA
s cb4.chrX              8268209 24 + 21540570 -TTTCAAGAGTAGTCagaataaaa--a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   379005 24 -  4500979 -GCTGACCagttttaaaaccaaaa--a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   480063 18 - 33334924 -tcaattcaatcaaaacat--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1579655 18 +  4147112 -tttgattaattcaGATAT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  207382 430 +   227596 I

a score=784173.000000
s ce10.chrX             3212779  915 + 17718866  
s cb4.chrX              8268233 1085 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   379029  980 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   480081  945 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1579673  952 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  207812  912 +   227596  
i caeJap4.Scaffold17545 I 430 I 631

a score=-10529.000000
s ce10.chrX             3213694 32 + 17718866 AAT------GTTCTACCTTGATTATAA------------------ATCACGTATCA
s cb4.chrX              8269318 30 + 21540570 GAATTG---TTGCTA----AATCACAAGA-------------------ATGAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380009 40 -  4500979 AAA--------GGTA----GATTACAAGAAATAGTGCA----ACGTTGATGAGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481026 52 - 33334924 ATAGGTTGAGTTGTA----GTTTGAGCTTTTTGACTCATTTGAACTTTATAAATCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1580625 38 +  4147112 GT-------TTTGTA----GTTTAAAACATGAGTCACA-------TTTATAAATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  208724 631 +   227596 I

a score=367648.000000
s ce10.chrX             3213726 351 + 17718866 AATAGACTTACCGCATCCCAAAACGTCAGTTGCTCGGCAATTTGCACGCAATTCTCTTTTCCAACATCAAACATTTTGACGCGCTCTTTGATATTATTAGGATAGTCGGAAGGGTCAAATCCCATGTCAGCAACGTACTGGCCAAGTGATGGAAGAGCGGCTTGCATTCCACCTTCATCATAGATTCGTTTGAACACTTCTCTTTGCTTTCGAGCTTTAGCCCGTAATTCGGTGAGCTTATTGCGACCGCCAAAGTCGAGAAGGCTGCTGAGCATGGCGAAATCTTTGTCCGAATCATAAAAGTCTTCTGGATATGTTTCGAGCCAGCACATCACAATTTGTCGGATAGAG
s cb4.chrX              8269348 351 + 21540570 TCATTACTAACCGCATCCCAAAACGTCAGTTGCTCGGCGATCTGCACGCAGTTCTCTTTTCCAACATCAAACATTTTGACCCGCTCTTTGATATTATTGGGGTAGTCGGATGGGTCGAAACCCATGTCAGCCACGTATTGACCAAGTGACGGAAGCGCCGCTTGCATTCCACCTTCATCATAGATTCGTTTGAACACTTCTCTTTGCTTTCGAGCTTTGGCACGTAGCTCGGTGAGCTTGTTGCGGCCTCCAAAGTCGAGTAAGCTGGAGAGCATGATGAAATCTTTGTCAGGATCGTAAAAGTCTTCTGGATATGTCTCAAGCCAGCACATCACAATTTGACGTATAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380049 351 -  4500979 TTTAAACTAACCGCATCCCAGAACGTCAGTTGTTCGGCAATTTGCACGCAGTTCTCTTTTCCGACATCAAACATTTTCACTCGCTCTTTGATATTATTCGGGTAGTCTGAAGGATCAAATCCCATGTCAGCAACATATTGGCCAAGTGATGGGAGAGCTGCCTGCATACCACCTTCATCATAGATTCGTTTGAATACTTCTCGCTGTTTTCGAGCTTTTGCTCGTAGTTCGGTTAGCTTGTTGCGCCCTCCAAAATCGAGTAAACTGGATAACATTGCGAATTCTTTATCAGCATCGTAGAAATCTTCTGGATATGTTTCAAGCCAACACATCACAATTTGTCTGATCGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481078 351 - 33334924 TTCGAACTAACCGCATCCCAAAACGTCAGTTGCTCGGCGATTTGCAcgcagttttcttttccaacatCAAACATTTTGACCCGCTCTTTGATATTATTGGGGTAGTCAGACGGGTCAAATCCCATGTCAGCAACATATTGACCAAGTGATGGAAGAGCGGATTGCATTCCACCATCATCATAAATTCTTTTGAAGACTTCTCTCTGTTTTCGAGCTTTTGCACGTAATTCAGTAAGCTTGTTGCGGCCTCCGAACTCGAGTAAACTGGTGAGCATCGCGAATTCTTTGTCTGGGTCATAGAAGTCTTCTGGATACGTCTCAAGCCAGCACATCACAATTTGTCTTATAGAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1580663 351 +  4147112 TTCAAACTAACCGCATCCCAAAACGTCAGTTGCTCAGCAATTTGCACGCAGTTCTCTTTTCCGACATCAAACATTTTGACTCGCTCTTTGATATTATTGGGGTAGTCGGAAGGATCAAATCCCATGTCGGCAACATATTGACCGAGTGATGGAAGTGCAGCTTGCATTCCTCCTTCATCATAGATTCTTTTGAAGACTTCTCTCTGTTTTCGAGCTTTGGCACGTAGTTCTGTGAGCTTGTTTCGACCTCCGAAGTCGAGTAGACTACTCAGCATGGCGAAATCTTTGTCGGAATCGTAGAAATCTTCTGGATAGGTTTCAAGCCAGCACATCAAGATTTGTCTGATAGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  209355 351 +   227596 aaaaaactaacCGCATCCCAAAACGTCAGCTGTTCTGCAAtttgcacacaattttcctttCCGACATCAAACATTTTCACTCTTTCTTTGATATTATTAGGATAATCGGATGGGTCGAAACCCATATTAGCGACATATTGACCCAAAGACGGAAGAGCGGCAATCATTCCTCCCTCGTCATAGATCCGTTTGAACAATTCTCGCTGCTTGCGTGCTTTGGCGCGCAATTCTGTCAATTTGTTGCGTCCTCCAAAGTCGAGCAGATTGGTGAGCATTGCAAACTCTTTATCTGGATCGTAAAAGTCTTCTGGATACGTTTCCAGCCAGCACATCACAATTTGTCTGATAGAG
i caeJap4.Scaffold17545 I 631 C 0

a score=4917.000000
s ce10.chrX             3214077 6 + 17718866 CTGAAA
s cb4.chrX              8269699 6 + 21540570 CTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380400 6 -  4500979 CTGGAA
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold629   481429 6 - 33334924 CTGAAA
i caeSp111.Scaffold629  C 0 I 40
s caePb3.Scfld02_0      1581014 6 +  4147112 CTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  209706 0 +   227596 C

a score=-1137.000000
s ce10.chrX             3214083 13 + 17718866 AGTAAATTATTAT--
s cb4.chrX              8269705 11 + 21540570 --ATAAtcattgt--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1581020 13 +  4147112 --ATGGAGGTTTTAT
i caePb3.Scfld02_0      C 0 I 116
e caeJap4.Scaffold17545  209706  0 +   227596 C
e caeSp111.Scaffold629   481435 40 - 33334924 I
e caeRem4.Crem_Contig0   380406 24 -  4500979 I

a score=91.000000
s ce10.chrX             3214096 1 + 17718866 T
s cb4.chrX              8269716 1 + 21540570 t
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1581033 116 +  4147112 I
e caeJap4.Scaffold17545  209706 0 +   227596 C
e caeSp111.Scaffold629   481435 40 - 33334924 I
e caeRem4.Crem_Contig0   380406 24 -  4500979 I

a score=0.000000
s ce10.chrX             3214097 789 + 17718866  
e caePb3.Scfld02_0      1581033 116 +  4147112 I
e caeJap4.Scaffold17545  209706   0 +   227596 C
e cb4.chrX              8269717   0 + 21540570 C
e caeSp111.Scaffold629   481435  40 - 33334924 I
e caeRem4.Crem_Contig0   380406  24 -  4500979 I

a score=551.000000
s ce10.chrX             3214886 12 + 17718866 AAATTTTGCAAT
s cb4.chrX              8269717 12 + 21540570 aaattttttaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1581033 116 +  4147112 I
e caeJap4.Scaffold17545  209706  0 +   227596 C
e caeSp111.Scaffold629   481435 40 - 33334924 I
e caeRem4.Crem_Contig0   380406 24 -  4500979 I

a score=366.000000
s ce10.chrX             3214898 10 + 17718866 AAACAAGGAC
s cb4.chrX              8269729  9 + 21540570 aaatcagaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380430 10 -  4500979 AGACAAGAAG
i caeRem4.Crem_Contig0  I 24 C 0
e caePb3.Scfld02_0      1581033 116 +  4147112 I
e caeJap4.Scaffold17545  209706  0 +   227596 C
e caeSp111.Scaffold629   481435 40 - 33334924 I

a score=-1748.000000
s ce10.chrX             3214908 5 + 17718866 AATCA-
s cb4.chrX              8269738 2 + 21540570 ----aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380440 5 -  4500979 -AATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1581149 5 +  4147112 AAACA-
i caePb3.Scfld02_0      I 116 C 0
e caeJap4.Scaffold17545  209706 0 +   227596 C
e caeSp111.Scaffold629   481435 40 - 33334924 I

a score=5730.000000
s ce10.chrX             3214913 6 + 17718866 ACTCAC
s cb4.chrX              8269740 6 + 21540570 actcac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   380445 6 -  4500979 ACTCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481475 6 - 33334924 ACTCAC
i caeSp111.Scaffold629  I 40 C 0
s caePb3.Scfld02_0      1581154 6 +  4147112 ACTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  209706 0 +   227596 C

a score=74502.000000
s ce10.chrX             3214919 76 + 17718866 TTTTGAACCAACAAAGCTGATGTGCTGCCGTTCACTTCATTTTCCAGTGTTTCGTACCTCCGCAACAAACTGAAAA
s cb4.chrX              8269746 76 + 21540570 ttttgaaCTAACAACGCTGATGTACTGCCGTTCACCTCGTTCTCCAGTGCTTCGTACCTCCTCAACAAGCTGAAAA
i cb4.chrX              C 0 I 363
s caeRem4.Crem_Contig0   380451 76 -  4500979 TTTTGAACTAGAAGTGCAGATGTGCTTCCATTCACTTCATTTTCCAGCGCTTCGTACCTCCTCagtaaactgaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481481 76 - 33334924 TTTTGAACCAGTAATGCAGATGTACTTCCATtcacttcattttccaatgCTTCATACCTCCTCAGCAAACTACAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1581160 76 +  4147112 TTTTGAACCAATAATGCTGATGTGCTTCCGTTTACCTCGTTCTCCAGTGCTTCATACCTCCTCAGCAAGCTACAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  209706 76 +   227596 TTCTGCATCAATAATGCAGATGTGCTGCCGTTCACTTCATTTTCCAAAGCTTCGTATCTTCGGAGTAGACTGGAAA
i caeJap4.Scaffold17545 C 0 C 0

a score=-12331.000000
s ce10.chrX             3214995 45 + 17718866 TGGT---GGGGGT--ATTATAACCGATTAATTTATTCTCCAA---GACAATTC
s caeRem4.Crem_Contig0   380527 33 -  4500979 ---t---tgacga--aTTTTGAT--------TCATTCGCCAAAT-GGCAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481557 35 - 33334924 ---T---GAATGT--GTTTTGAT-------GTTATGCTCTCAATTAACGA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1581236 45 +  4147112 ---GAAAGAATGT--GTTTTGGTTCATTTCATTATGAATTAATTCAGTGA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  209782 41 +   227596 -----AGTGGTGTCAAATTCGAATTAAAAAGTTATAAAGAAA---AACT----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8269822 363 + 21540570 I

a score=499569.000000
s ce10.chrX             3215040  984 + 17718866  
s cb4.chrX              8270185 1020 + 21540570  
i cb4.chrX              I 363 C 0
s caeRem4.Crem_Contig0   380560  983 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   481592  989 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1581281  973 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  209823  968 +   227596  
i caeJap4.Scaffold17545 C 0 I 653

a score=4425.000000
s ce10.chrX             3216024 74 + 17718866 AGCATTCAGTATATAGAGTACGGGGTGTGTAGATAGTTG---AA------AAAAGGTCGTGTCTTTTATGTACAAAAGGTTTT
s cb4.chrX              8271205 64 + 21540570 ---AGAGAAT-CATGAAATACGGAA--AATG---AAATG---TA------TATAGGTCGTACTCTTTCTAAGAAATTGGTTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   381543 71 -  4500979 AGCAGAAAAT--ATAGTGTACGAAGT-GATG---AAGTGAGAAA------GAAAGGTCGTACCTTTTATGTACAGAAggtttt
i caeRem4.Crem_Contig0  C 0 I 393
s caeSp111.Scaffold629   482581 58 - 33334924 AGCATAGA-------------GAAACCTATG---AGGTG---TC------AGAAGGTTGTACCTTTTATGTACAGACGGTTTT
i caeSp111.Scaffold629  C 0 I 207
s caePb3.Scfld02_0      1582254 54 +  4147112 AGCAGAGA-------------GAAGTGTATG---AAGTG---TAGAATAGAAAAGGTCGAACCTTTTATGTAC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I

a score=-23922.000000
s ce10.chrX             3216098 434 + 17718866  
s cb4.chrX              8271269 579 + 21540570  
i cb4.chrX              C 0 I 101
s caePb3.Scfld02_0      1582308 308 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I
e caeSp111.Scaffold629   482639 207 - 33334924 I
e caeRem4.Crem_Contig0   381614 393 -  4500979 I

a score=-607.000000
s ce10.chrX             3216532 71 + 17718866 CTTTATCAGCCAATAATGTTTGAAGTATTCATAATCCCACACTGTAGAGGTTCAAACATGCGTCAGTGCTT
s caePb3.Scfld02_0      1582616 51 +  4147112 CATTACC---------TTTTCGAAATAAT----ATAGAATACTGTAATGG------CACACGGAAGT-Cga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I
e cb4.chrX              8271848 101 + 21540570 I
e caeSp111.Scaffold629   482639 207 - 33334924 I
e caeRem4.Crem_Contig0   381614 393 -  4500979 I

a score=-22551.000000
s ce10.chrX             3216603 312 + 17718866 --------TACATTTCTAAAAAAAAAGT------GGCGCAAACTCAGTTTTCACCAATTTTAGACTAGAAAATAATAAA------------------------AAAAAACTGTCCAAAATTTTTTA----AAGTTATACCATGATATTT------------------------------TTTCATTTTTTTACCTGGTTTTGATCAT----------TTTCACATT-----GTTCG---------TACTCCAAAAA-------------TCAAGT------TTTAAAACATAAATTTCGTGG----CTCGAAAGTTGAGCG------AAAATTTTCAGATCGACTTTTTCTTGC-------------------------------------TCAGAGAGCCGGTAAATT-------------TTCTGTAGGGACCTATTC------------AAA--AAGTTCGAAGTTGCTTTTGAGAT--------TGCGAAATATCC--TCCTGAAGA
s cb4.chrX              8271949 499 + 21540570 TATACTtcaaaacctttaatagaagggtcactgaatttggaatcaaaatttcacgTTATTC---TTAGAAAATATAAAGAAATAGTCAACTGTAAAATTGTTTATAAATATATCAGCAATAGTatat---aatatcagcaatagtatatttgctctaatagaggTCAACCGTATACAAGCAGTATggcctcaattatctcggttcttatgtaaaatattttaaaacgTTTAACTAAAActatatttatcataatatgaccATTATTTCATCATTTGAGAGATTTTCGATAT--ATCTCATAGAAATCTgaacaattgagctcaaggtgCAAGTTTAGGGTAGGATTCCATTTGAGAAAATGaggtatttttcaaatgaggaatttctgaaataagaACCAAGATGAATTATGTCAAAAGCATTTCTAT-TGGAGGTCCTCAACTATCTCGCAAAATGTTGTCAAAAGCTTTTTGGTCGATGTGTCTCCAccaaaataatt--tatcaaag-
i cb4.chrX              I 101 C 0
s caePb3.Scfld02_0      1582667 280 +  4147112 --------taaatgttcaaaaagaaaatcaaatcgtTACTAGTCAAATCTCT------TTT---CCAAAAGCCATTAGG----------------------TCAAAAATCTGACAAAAACAATGTATTTCGAAATCTAAAACAAAACAT------------------------------CATTCTTTGTTCAATC-TCCaggttgat----------ttttgaaac-----actaa---------tATTTTAATAT-------------TCAAGTAAACAGTTCTAAGCAT--TTTTATAAAAAGTAACAACAAATGAACT---------------------------GTTTGA----------------------------------AAACTAGAGCAGAATTGAATC--------------------------TCCTC------------CAATGATGTTTGAA----------------------AACAGATAAATTCATGTCTGAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I
e caeSp111.Scaffold629   482639 207 - 33334924 I
e caeRem4.Crem_Contig0   381614 393 -  4500979 I

a score=2689.000000
s ce10.chrX             3216915 39 + 17718866 AACACATGCAAATCCAATAGT--GATTCATTTCACTGGAGA----------
s cb4.chrX              8272448 37 + 21540570 AGCACATGC--------------AATAAAtcgtaattcaaaattctcggCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   482846 41 - 33334924 AGCACATGCAAATGTGCTGAGGAAATTAATCTTCATCAAGA----------
i caeSp111.Scaffold629  I 207 C 0
s caePb3.Scfld02_0      1582947 41 +  4147112 AGCACATGCAAATGTGAGAGGATAATGTATCTCAATCAAGA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I
e caeRem4.Crem_Contig0   381614 393 -  4500979 I

a score=22798.000000
s ce10.chrX             3216954 222 + 17718866 --------ATCTTGATTGATGGAACAAATGTTT----GCAATA-TATATGCTTTCTGAGAATCTAAATTAGTATTTGATAAATTGATGT----CTTCC---TAGCCATCTCCAT----------------TTT------TACTGCC------TTCATTTA---------GTCATTCAGTCAGTCA-----TCATACAAAACGATTACATACATTT---------------------------CTGGAAACAGTTATGCATGATGTCTCAAGAA------CATTA-TCCGAACG------GCTGACAAGATCAGATCATGGAACA
s cb4.chrX              8272485 243 + 21540570 ------------AGTCTGATGGATGGAATGTTT----TCAATCTTCCCCA----TCAAGAA--GAGACAAGAATGAAACAAAttgattctcaattttctcaaaggCTC--CCCC--AGCAAAGA-AATGCTTC------TAATGCTTATCCTCTTGTCTCTTGCTGCTACTTCTTGATTCT-TTGATTCAACAGACACATTAA--------CTTTAATTGTGTT----------------------GAACAGTTATTC-------GGCGTGAATATGTGTATCA-TCAGAATG---------GACAAGATCATATCATGGAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   382007 252 -  4500979 --------aTGTTGATTGATGGAACAAATGTTT----CCAATC-TACACA----TCaagaattgaaatgagaaagaataGAATATATGT----TTTGCTCGTAGA-------AA--AGCAGACACGATGCTTCTTCATGTAATTTCAATTCCTTTGTCTC---------CATCTTCATTCT-TCG-------AAGCACATTTGTAACGTTTCTATGAAtgtgtttctgttt-----------cttgaaacagttATTC-------CGCGCGAA------TATCA-TTTGAACACATAAATATGACAAGATCAGATCATGGAACA
i caeRem4.Crem_Contig0  I 393 C 0
s caeSp111.Scaffold629   482887 265 - 33334924 ATTCGAAGACATTGATTGATGGaacaaatgttt----tcaatc-tACACA----TCAAGAA-TTACACAAGA---AATTACATTCATGT----TTAAC---TAGGCTCATACAGGCAGAACACACAATGTTCA----TCTAATTTC-----TTTTGTCTA---------ATTCTTGATTT--CCACCCATTCAAACGCAATTGTTACGTTCAGATGAATGTatatgttgtttttttttgcaactgGAAACAGTTATTC-------CGCGTGAA------TATCATTCTGAACA------GATGACAAGATCGGATCATGGAACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1582988 257 +  4147112 ATTC-------TTGATTGATTGAACAAATGTTTCCAATCAATC-TAAACA----TCAAGAA-TTACACAAGA---ATAGTGAATTAGGA----TTTAC---AAGGCTCGTATCG--AGAAGACATAATGCCTT----CGTGATTTC------ATTGTCTA---------GTTCTTGATTCTGTTGCCCGTTCTAATGCAATTGTTACGTTCGGATAAATGtgttgatggtttttttttt---cttggaacagTTATTC-------CGCGTGAA------TATCA-TCTCAACA------TATGACAAGATCAGATCATGGAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  210791 653 +   227596 I

a score=55515.000000
s ce10.chrX             3217176 363 + 17718866 GTCTAATGGTGTG--TATGTATGTGCGTGCAAAGTTTTCAA--------CAAACCTGT-CG-TCGTCGGAACACCAAATCTCAC--------------------TGACGCACGAACATTATTTTTTTTTGTGTGTGTCACAAAGAAACGTTTCATTGGTTTTGGC------GAGGAGAC-TTTGTGGTGGTGGTGGTAGTAGTAGCGGGAAATACGAAAATGAA--AATTAGAATTAGCATTAGCGAGGAGAACTGCCTCTCTCGTG----TAATTTATATCGATAGTGACAGATGATTGAGTTGAACTAAATGACAAGAAGAGAAACG-AGGAAGAGGAACAGGACAGATAATGA---------------TGAAAAGT------G--GAGCAAGAATCAAAACATATACAAAGTG-CTCTAGAAATTGTAAA--------------------
s cb4.chrX              8272728 315 + 21540570 GTCTAATGATGTGTATATggatg------aaaagttttcaacacAGGGGCAAACCTGT-TGAAC----GAACGCC-AATCTCACGTTTTCG------TGTGTGGTGAAG-ACGaacattcctttttttcgtgGTT---GGAATGAAACgtttcatttgtttttcc--tCTTCATGCGGT-TTCGGTGTGGT-----------------TAACAACAAGA-------------CACAAGAATTAGT---GT---------TTCTTGGGGAACTCAACTTTATCGATAGTGACAGATGATC-CGTTCAG--------TGATGAAAAGGAGG-AGGAAGCAGATTAAGAATGTAAAGAA-----------------------------A--GAGC--AAATCAAAACATGAGATATGTCTGCCACCAT----------------------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   382259 348 -  4500979 GTCTAATGATGTGTATATGGatg-------aaagttttcaa--------caaaCCTGT-TG-------GAACGCC-aatctcacttttc------------ttctgacg-acgaacatta---ttttttgtgtta---gAAAAGAAACGTTTCATTGGTTTT--A--GCTAGGTGTGGT-TTTGTGGTGGTGGTTA----AATGGCGGTATCGACaagaat-----------aaaaagaattaGTGAGGG---------TCCTCGTG----TTATCTTTATCGATAGTGACAGATGATTGAGTTCAGCTAAATGacaatgaaaaagtggaaggaGGAAGAGGAACAAAGTGAACAAGACAG------AAATTGTAGTGAAGTGGTA--GAGCTAGAGTCAAAACATATGCTGCGTC-GCCACCACATTGTCAC--------------------
i caeRem4.Crem_Contig0  C 0 I 49
s caeSp111.Scaffold629   483152 334 - 33334924 GTCTAATGATGTG--TGTGGATG-------AAAGTTTTTAA--------CAAACCTGT-CG-GC----GAACACC-AATCTCACTTTTC------------GTGTGACG-CCgaacatta---ttttttgtgttt----agAAGAAACGTTTCATTGGTTTTCAA---CAAGGTGCGGTCTCTGTGGTTTTG---------------GCAATGCCAAGAAT-----------AATGAGAATTAATGGGGG---------CCCCCGGCGAT-TAATTGTTATCAAAAGTGACAGATGAAG-AGTTTGACTAACTGacaaagagaaggaag-a--aacaagaacga-aagaagaacaagagatTGGGGGAGAATGTAGTGC------A--GAGC--ACGTCAAAACATATGTTACGAC-GTTACCGAATTGTCAC--------------------
i caeSp111.Scaffold629  C 0 I 29
s caePb3.Scfld02_0      1583245 346 +  4147112 GTCTAATGATGTG--TATGgatg-------gaaattttcaa--------caaacctGTCCG-AA----GAACACC-AATCTCACTTTT-------------GTGTGATG-gtgaacatta---ttttttgtgtgt--caCAAAGAAACGTTTCATTGGTTTTGGAAGGCTAGGTGCGG--CTTGTGGTTTTGGGTG----GTGGCAAGAAGTGGCAAGAAT----------AAATGAGAACTAATGTGGA-----------CCCGTCGAT-TAATTGTTATCGATAGTGACAGATGATG-AGTTCAACTAAATcggaaggaggaagagg-aacaagatgaacaagaagagaaacaagacAC------AGAATGTAGTCA------ATCGAGC--AAATCAAAACATATGCTACGTT-GTCATTACTTTGTCAC--------------------
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold17545  211444 330 +   227596 GTCTAATGATGTG-AGAGAAATG-------AAAG-TTTAAA--------CAAACCTGC-TG-------GGACAAG-AATCTGAATCTGCTGCCAGAATGTTGCTTGACG-CAAgacatta---ttttttgtttga-----aacgAAGCGTTTCAATGATTTTAGT---------------GTAGAGG---------------------AATAGGCAAAAAAGAATTGATCAACATGTGAAAGGAAgggaa---------aattaaagaat-ttaTATAAACGAATAGTGACAGTTGAAG-AGGAATGCCCAACGACAAGGC-AAGGATG-AAGAAGCAG----------------------------AGATTGATGCAC------T--GAGC--AAGTCAAAACATGTGTTATTCG-CTCACCACGTTGTCAATCACGTACGAAAATTTTGAG
i caeJap4.Scaffold17545 I 653 C 0

a score=-4964.000000
s ce10.chrX             3217539 14 + 17718866 AGCCCACATG------ATGA------
s cb4.chrX              8273046 13 + 21540570 -------ATTCCGAACAGGA------
i cb4.chrX              I 3 I 2
s caeSp111.Scaffold629   483515 14 - 33334924 ATTATGTGTT------AGGA------
i caeSp111.Scaffold629  I 29 I 7
s caePb3.Scfld02_0      1583621 16 +  4147112 ATTAGATATT----ACAGAA------
i caePb3.Scfld02_0      I 30 I 15
s caeJap4.Scaffold17545  211774 10 +   227596 ----------------AGGGCATCGA
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   382607 49 -  4500979 I

a score=13940.000000
s ce10.chrX             3217553 221 + 17718866 --ATAAA------AGCTGTCCAACATATATGGGTGGTTGAAATGGTAAAAGTGC--------ACCTTTAATCTAGGTCAACAAGCAGTAAAACCAGTAATCC-----------------------AGCTGTTCATAAACCTCCTTCTGT-----------------------------------------ACAACCGAACGAGTAGAATT---GTGA---------------AAAAGCGTGACAAAATC---------------------------ACCCACCTGGTACGGAA--TATCTGGCAC-CAAGAATGAATTCAAAATCACAGATGT-----GAA-----------ACGTAAA-------------CAGATG
s cb4.chrX              8273061 204 + 21540570 ---------------------ATGAAATGTGGGTGGT--ATATGG-AAAAGTACAGATTTCTA-TGTATATCTAGGTCAACAGGCAATAAAACCACTAATCC----------------------CAGCTGTTCGC--TTTCCCCTTTAG-----------------------------------AGGATAAAAATG----------AATG---ATGA---------------AAAAGCAT--TGAAATC---------------------------ACCCACTTGG-------------TGGTAC-CGAG--------TGAGAGTATATCTAC-----GCA------AAACCCCAACAGCTGCAGTTTCGAACAGATG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   382656 267 -  4500979 --agaaa------aaataaatataacaCATGGGTGGT----------AAAGTGC--------A-TTGAGATTTAGGTCAACAGGCAGTAAAACCAGTAATCC---------------CTAAAGGCAGCTGTTCGCTATTTTCGCACTAGC-------CGCAAAGCTGA-GTGAAAT------GTGAAATAGAGATGGAA--AATTCAATGCT-ATGAATTTTATTGAGATG-AAAAGCATGACTGAATT---------------------------ACCCACCTGGTACTAAG--TATCTGGCAC-CAAAG---GATTTGAAATCACAGCTGT-----GTATTTTATAGAACACACCAG-------------CAGATG
i caeRem4.Crem_Contig0  I 49 C 0
s caeSp111.Scaffold629   483536 261 - 33334924 --CGGAA------AAAGAACTA-AACACATGGGTGGT----------AAAGTGC--------A-TTGTGATCTAGGTCAATAGACATAAAAACTAGTAATCC----------------CAAAGACAGCTGTGCGATTATTTCGCATTGGGGCTTTCACAAAAAGCTTATGTGATCTGGGTGGGTAAACCGAGaac-------attgaatttcaatggcttaagcagagaaaaaagag---gaatgaaTT---------------------------ACCCACCTGGTACTGAG--TATCTGGCAC-CAAAA---GACTCAATATCACAGCTGT-----GAA------------CACTAA-------------CAGATG
i caeSp111.Scaffold629  I 7 I 94
s caePb3.Scfld02_0      1583652 269 +  4147112 --CAGAA------AAATAACTA-AACACATGGGTGGT---------AAAAGTGC--------A-TTGAGATGTAGGTCAACAGGCATTAAAACCAGTAATCC----------------CAAAGACAGCTGTGCGATTTTTTCGCACTGGGT------TATAAAGCTTATGAGATCT-GGTGGTCTGGCTTGGaacggaa--aataaaattttattgaattgaagCGATATGAAAAAGCGTGACTGGATT---------------------------ACCCACCTGGTACTGAG--TATCTGGCActcaaaa---gattcaaaatcacAGCTGTCTATCGAA------------CACCAA-------------CAGATG
i caePb3.Scfld02_0      I 15 I 1
s caeJap4.Scaffold17545  211784 271 +   227596 ATAGAAAGTTGGTAAAGGATCA-AACACAT--GTGGT---------AAAAGTTC--------A-CAGAGATGTAGGTCAGACAGCAGTAAAACCAGTAATCTGGCAGTGGGTGGTCTACGAGGGCAGCTGggaatattttttctgttgttg------CGCAAAGCT------------------------GTaatgggaaaaataaaata---aaaa---------------acgagTGGGCCGTAACGTTTCCCATCTTATTTTATGGTGTGCAAATCCACCCGGTCCTAATACCATCCGGCGC-CGGT----TGTTC----TCGCAAGAGT-----AGA-----------GTATAAA-------------CAGATG
i caeJap4.Scaffold17545 C 0 C 0

a score=-4725.000000
s ce10.chrX             3217774 52 + 17718866 -TGTT----------GA--TGTGCTTGGTGAAAAATAT------------TCTAGCTGACGGGAAAA-GTAAAGAGAT
s cb4.chrX              8273265 63 + 21540570 ----T----------GCTGTACGTGCTATGTATATTTTCCTTTGGCAAAAAACCTCCCACGAGAAAA-TAAACTGGAT
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   382923 49 -  4500979 ----T----------GC--TATGGGTTATGTATATTTT------------GATTGTCAACCGAGAAA-GAAACTGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1583922 53 +  4147112 -TGGT----------GC--TGTGGGTTATGCATATTTT------------CACATTCAACCGGGAAACAAAACTGGAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17545  212055 60 +   227596 TTGGTCTTTCGACTAGC--TGGGTTAGATGTTgaaaac------------tggatacaatagaaaca-aaaataa---
i caeJap4.Scaffold17545 C 0 C 0
e caeSp111.Scaffold629   483797 94 - 33334924 I

a score=-6722.000000
s ce10.chrX             3217826 58 + 17718866 ATGCAACG------GAAGAAAGCTAATATAAAAAACAATTGAAAAGTAGGAAGAAAA---AATGGGA
s caeRem4.Crem_Contig0   382972 36 -  4500979 -TTC--------------TCTTCTACTAGCAAAAGCAGacaggaa----aaaaac------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1583975 44 +  4147112 --------------------TTTTACTAGCAAAAGCTGTCGGGAGATGCAAAAACAG---TGTAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  212115 61 +   227596 ------taataaacgaggatctaaaaaagaaaaagaaaacgaagaagatgaagaaaatccaacggaa
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8273328 47 + 21540570 I
e caeSp111.Scaffold629   483797 94 - 33334924 I

a score=-2903.000000
s ce10.chrX             3217884 16 + 17718866 AGAATAAGAATAAGAA
s caeRem4.Crem_Contig0   383008  3 -  4500979 -------------gga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   483891 13 - 33334924 ---agaaaaagaaata
i caeSp111.Scaffold629  I 94 I 3
s caePb3.Scfld02_0      1584019  3 +  4147112 -------------GTA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17545  212176 15 +   227596 -aacggaaggCAAGTA
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8273328 47 + 21540570 I

a score=407707.000000
s ce10.chrX             3217900 766 + 17718866  
s cb4.chrX              8273375 854 + 21540570  
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   383011 722 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   483907 693 - 33334924  
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1584025 731 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17545  212191 685 +   227596  
i caeJap4.Scaffold17545 C 0 I 1046

a score=4029.000000
s ce10.chrX             3218666 137 + 17718866 GGAACAATAA----------------GAGCATTGTTTGGGAAAGGCGCTTTCCGGTGGACACCCAAAA----GTTACTGATTGCGCAATGAGTCATAT--AGTTGGTCGAAAAAAAACCGCGATAAGACCAACTTGCTCTGACATC--------AAGT-------------------------------------------------------------------------------------------ACTGATAAA
s cb4.chrX              8274229 146 + 21540570 ATGATGATAATTTGTCTCAAAA----TAAGGGAGGTT-----ACCTTCCTTCCGGTGAGCAGCTGGCT-C--GTGACTGGTTGAGCAATGAGTCagagaaaatc-aagaaacaaAGGCTGCGATAAGACCAAGGTGCTCCAACAAT--------GAGT-------------------------------------------------------------------------------------------TTTGTTAAA
i cb4.chrX              C 0 I 1022
s caeRem4.Crem_Contig0   383733 149 -  4500979 ATAAAATTGGtgtgcaacaaaaaaactaatgaTGGT------------CTTCCGGTGGGCAGTTCCCTCC--GTGACTGATTGCTCAATGAGTCAGAG--CTCC-CAAGAACAAAGACTTCGATAAGACC-AGGTGCTCgaactatcaaaaatcaagg-------------------------------------------------------------------------------------------tctgataaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   484600 108 - 33334924 CGTGCAATGC---------AAA----AAACAATGGT------------CTTCCGGTGGGCAGCTCCCT-CTAAGAACTGATTACTCAATGAGTCAGAA--CACCGAAGAAACAAAGACCATGATAAG--------------------------------------------------------------------------------------------------------------------------ACTGATGGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1584756 231 +  4147112 CCTACATTGTTT----GCAAGA----AAACAATGGT------------CTTCCGGTGGGCAGCTCTCC-C--ATTACTGATTGTGCAATGAGTCAGAC--CGTC-AAGAAACAAAGACCGTGATAAGATC-ATGTGCTCGAAAGTCACGAATTTGAGGCTTCATTAATGAATTCGGGGTTAATGGCCTGCATTTCATCTTCAGATTCTttagattactgtatttttgttgTACTCCCAAAGGAATGTCAACTAATGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I

a score=-3836.000000
s ce10.chrX             3218803 18 + 17718866 TAAGATGCTACAATTGAA
s caeRem4.Crem_Contig0   383882 10 -  4500979 --------tgaaattgaa
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold629   484708  2 - 33334924 -----TC-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1584987 12 +  4147112 -----TCATCTTTTTGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I
e cb4.chrX              8274375 1022 + 21540570 I

a score=-616.000000
s ce10.chrX             3218821 33 + 17718866 CAAATATCTATATTGTAGGGATATATAATAAGT
s caePb3.Scfld02_0      1584999 27 +  4147112 CATGTGCTTA------ACAGAAAAATTCTCATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I
e cb4.chrX              8274375 1022 + 21540570 I
e caeSp111.Scaffold629   484710  0 - 33334924 C
e caeRem4.Crem_Contig0   383892 37 -  4500979 I

a score=-42296.000000
s ce10.chrX             3218854 237 + 17718866 AAAGTTGATCTTACTGAATTAGTAACTTATTTAGCAATTAAAAAAAA--------------------------------------------------------------AAGCTAAAAAAGCTAACAAATAGTTTTCAATAAACTAGTTGTTATGT-------------AAAATCTGCGCCGTTTTTATTAGGCAAAT------------------------TTGAAAAT-----TCAAAA-------------------GCATGTATTATT-CTACCCTTTATTCAAAATTTTTTTAAAATCCAAAAA-----------------------------CTAGTTAATTTGTCCAAGATTAAATGCAAATGCCTTAGTATTTTTT----TAAATG
s caeRem4.Crem_Contig0   383929 125 -  4500979 aaagtttt----------------------------tctctgaatta------------------------------------------------------------------------------------------------------tTCGTATTTCC---------AAA-----------------TAAGTGAAC---------------------------ATCAA-----TGTAATCAGAGGACAGTG-------TCTTGAGA-GGT-CAAACCACA---CTGGG------------------------------------------------CAATTAAATTTACGT-----------------GTTTCGAACTTTTC----TAAATG
i caeRem4.Crem_Contig0  I 37 I 12
s caeSp111.Scaffold629   484710 128 - 33334924 ---------------------------------GAGCTCGCGAAACA--------------------------------------------------------------------------------------------------------------------------AAAGTTTG-----------ATAAGTAAac-------------------------gaaatat-----ttgaaactgG---------------CCCCGTGCTAGT-TTCCCGATA---CTAGaactgtttcaattt-----------------------------------tttttaaatttacgAC----------------ACTTCAGATTTCACCTTCAACATG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1585026 375 +  4147112 ACATTTTTGCTTGCTAAAAcgtgaa---aatcagaatttgtGAAAGAATGTTCCACTGatactctaatagaagtgcaCCTACAAGCTCGTTTAAAACACCATAGCTTAAATGCCAGCAAAGCTGTTAGAAGGTTGT---TGAATAAGACTTTGTTTTTGcttcagcttcaaaaattg-----------ttcggTAAACAACTTTCCGATACCATCTTGTGATGGAAACATGGGGCTCCAAACACGTGACAACAGCTGCACCCCTGATTTAGTACTCATGATAGTGctagacatttttcagttccaaaatcCTAACAGCAAAATTAGCTCGTTATGCTACTCTTTCATTCGGAActaaaaagaatcaaa-aattttatactttttctt-AACAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I
e cb4.chrX              8274375 1022 + 21540570 I

a score=-2668.000000
s ce10.chrX             3219091 14 + 17718866 CAAA--------ACTAAATCAA
s caeSp111.Scaffold629   484838  4 - 33334924 TTCG------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1585401 22 +  4147112 CTTGAAACGTGCACTGTCTATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I
e cb4.chrX              8274375 1022 + 21540570 I
e caeRem4.Crem_Contig0   384054 12 -  4500979 I

a score=-36852.000000
s ce10.chrX             3219105 193 + 17718866 AATACAATATATT-----------------------------------CGTATGAC--TTAAAATATAAAAATTGGG---------TATTCCTAGAACTAGGTTAAACTTGAAAAAAAACAATTTTTTTGCTTTAAACTTACTTGAAAGCTCT-ATT---------------------------------------------------------------------------------------------------------------TCCAGAGTTTTAATATTATCAAAAATCGCAAA----TTATC-ACTGGGAACTTTAAACAAATTCAGAAAAACAATTTTTTCA-----------------TATCCA
s caeRem4.Crem_Contig0   384066 125 -  4500979 AATAC----TTTT-----------------------------------TGTATAAC------------------------------ATCTAATAAAA----------------------CAATtact--tcttcgtttttt-------gttttcaat---------------------------------------------------------------------------------------------------------------ttaattG-------------GTTGGTCTCGAACTTCTTATCAATCACAAACTTTCGATGACCTTTTGAACA----TTCT--------------------ACACCT
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold629   484842  78 - 33334924 ------------------------------------------------TTTAAGGC------------------------------AATCACTAGAA--------------------------------TCTCCTGAATCG------GGATCTCAGTGACCT----------------------------------------------------------------------------------------------------------TTCA----------------AACAGTC-------------CTAATGGGATT------------------------CTTT--------------------Gaatca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1585423 340 +  4147112 AATAC----TACTCTGTTAATTAATTCTAAAGtccttgaaaaaatatttttcagactgttaACTTATAATCGTTGAGCACTGTGTAAGTTgctagaa---------------aaaacaacaatcaaT-GCCTTCAAAATGG-----AAGTTCTCAGTAAGCTGAACATAACTTTTATGATAATTATTCCTCAGACTCTTGACGCAAGTTCAAAGGAACTTTTGATCCTATTTTGTGATAAACCGtgacaatttttattttgtcacGTCTTCAAAGT----ACACCACCAACAATCACTAACACCTTATCaagtgaaatttcaaaatgaccttttgaaaa----ctttccattCTACTCTCCCactaaaaaaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  212876 1046 +   227596 I
e cb4.chrX              8274375 1022 + 21540570 I

a score=1101.000000
s ce10.chrX             3219298 16 + 17718866 ATTCCTCGAAAAAATG
s caeRem4.Crem_Contig0   384191  8 -  4500979 AT--------AAAACG
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   484920  9 - 33334924 atc-------aaaatg
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1585763  9 +  4147112 att-------aaaacg
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17545  213922 16 +   227596 atttttacaaaaaaaa
i caeJap4.Scaffold17545 I 1046 C 0
e cb4.chrX              8274375 1022 + 21540570 I

a score=104804.000000
s ce10.chrX             3219314 179 + 17718866 CTTACCGAGCTAATATAATGAGCAAATTTTGAGCATCTGTCTTCAAAATCAAGACTATAGGAATGAAGCCTAAGACTGCTCCAAACGTTCATCCTTTCGTAATT------CTAGCA-ACGAA-ACTGGAGCT----CAGTGGTCGCGTGTCAAATATTCGTCACTATGTTATA-TGTGGCAAATGTTTTATT
s cb4.chrX              8275397 165 + 21540570 CTTACCGAACTGATGAAATGAACCAGTCGCGAGCACTTATCCTCGATATCATAGCTATATGATCGTAGTTTGAGACTGCTCCACA---------TTTCGTAAGC-----AAGAGCA-AC----AAGGCAAAA------AAGTTAGAATGGAATATATTTGTCACGATGT--TGAAGTTGCGAATGTTTTATT
i cb4.chrX              I 1022 C 0
s caeRem4.Crem_Contig0   384204 172 -  4500979 CTTACCGAATTGATATAATGGACGAGTCTTGAACATTTATCCTCAATATCATAGCTGTAGGATCGTAGTTTTAAACTGCTCCAAACGTTCAT-GTTTCGTAAGT------CGAGCA-ACGAAAAATGGAGCC------AATGTCGCGTGTCAAATATTCGTCACTATGT--TG-TGTTGCGAATGTT---TT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   484934 176 - 33334924 cttaCCAAACTAATATAATGAACAAGTCTAGAACACTTGTCTTCAATATCATAGCTGTAAGATCGTAGCTTCAGACCACTCCAAACGTTCAT-GTTTCGTAATT----CGTGAGCC-ACGAG-AATGGAGCT-----GGGTGTTGCGTGTTAGATATTCGTCACTATGTTGTG-TGTTGCgaatgtt---tt
i caeSp111.Scaffold629  I 5 C 0
s caePb3.Scfld02_0      1585777 174 +  4147112 CTTACCGAACTGATATAATGAACGAGTCGGGAACATTTTTCCTCAATATCATAGCTATAGGATCGTAGTTTGAGACTACTCCAAACGTTCAT-GTTTCGTAAGC----CAAGAGCCAACGAA-AATGGAGCC------AATGTCGCGTGTTAGATATTCGTCACTATGT--TG-TGTTGCGAATGTT---TT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17545  213938 188 +   227596 attaccgagcTGAGATAATGCACaagttttgagcattttgacTCAAAGTCATAACTTCTTGTTCGTAGCTTGAAACTGCTCCAAACGTCCATAGTGttgagagcaaaaaacgaaaa-atgaa-aagagagagagagaatgtGCCGCGTGTCATAAATTCGTCACTATGTTTTG--Gttacaaatgttttttt
i caeJap4.Scaffold17545 C 0 I 1000

a score=-10400.000000
s ce10.chrX             3219493 201 + 17718866 T-----TCTAT-GGCCA---CAGGATTCACAAGCTTTT-------GCCATGTTTCAAAACTTTTTCTGAGTTTTCATG-TG------------ATTTTGAGAATTGTGAATAATACGTAGAATGTTCCAGAGTTCCAGAAATGTGAGAAGAATTCGCGAAGAA----------------CGGAAAA------------------------AAATAAGTGGCACTCAGCTTCATCTATAGGAAAAAGGGGAA--AAGGAG-------GATTA--ACAAATTT
s cb4.chrX              8275562 158 + 21540570 T-----TGTGTAGGCCT---CGGGATTTGCAAGCTTTTCTCTCAAGccatgtttcaaaacttttta--------caTGACg----------tgatttcaa------tgaaa--------aagtttt-----------------------gaatttatattgaaattttttttt------tgaaata------------------------aagcTAAAA---CTCAACAATATCC------------------CCGGAG-------TAGCT--ACAACTTT
i cb4.chrX              C 0 I 11501
s caeRem4.Crem_Contig0   384376 171 -  4500979 T-----TGTAT-GGCCGGGATGGGATCCACAAACTTTTT------gccatgtttcaaaatttttta--------catgATGATATGAAACCTCATATcta------ggaaa--------aaa--------------------------------------gaagttttcaatggcacgatgaaatc------------------------aaacaaaag---ttCAACTGCAAAC----AGAAAACGTGATGATTGAGA-------TAACCCGCTAACCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   485110 157 - 33334924 tctctctgt---gcC-----CGGGATTCACAAGCTTTT-------GCCAtgtttcaaaacgttttt---------atggtg------------atttcaa------tgaaactgactataaaaagt-----------------------gaaaatgaggTGAA----------------CAAAAGA------------------------GAACTAGAG---CCCT---AGAGCCGCAGGAAAAAACTGA---TGGgag--------attc--gaaaattg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1585951 175 +  4147112 T-----TGT---GGC-----TGGGATTCACGAGCTTTC-------GCcatgtttcaaaacgttttt--------catggag------------atttcaa------tgaaaccaacacaaaaaatt-----------------------ggaaac----tgaa----------------caaaaaatatggaaactatcaaacggaaaatgaaggaaag---ttttg--ataaCC-------AAAAGTGC---TTGATATccctttttttt--ataaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  214126 1000 +   227596 I

a score=-873.000000
s ce10.chrX             3219694 5 + 17718866 TGGAT
s cb4.chrX              8287221 5 + 21540570 TTCGT
i cb4.chrX              I 11501 C 0
s caeRem4.Crem_Contig0   384547 4 -  4500979 -TAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   485267 5 - 33334924 agggt
i caeSp111.Scaffold629  C 0 I 68
s caePb3.Scfld02_0      1586126 5 +  4147112 tctcT
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17545  214126 1000 +   227596 I

a score=-10323.000000
s ce10.chrX             3219699 98 + 17718866 -------CAATGCAAAATC--------ACAGAAAGAAAAGTT-----TTA----CCAAATGACCAATTTTGTAATCACCCAATGCATAGCACTTTTGAAAATATTTTAGAAATACCTAAAAA-------
s cb4.chrX              8287226 57 + 21540570 -------CAATTC--------------------AAACCAatt-----cta-----------aacatttt-----------gattCGGAATGACCttatcaaaac-------------aaaaata-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   384551 92 -  4500979 -------CCAATTAATTGT----------ATGAAAACGAATTACCCCCTATCGTCGCAGTCATTATTTTT--------CCTATCCATCATTATCTTACagaaactttaga-------aaaaata-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1586138 99 +  4147112 TAACCTTCAATCTGGCTGTGTTCTTGGACACATAAACGGTTT-----GCG----CAGAGgtattattttt--------ctaatccATCATTATCTAAgagataa-------------gaaaatgaaaaa
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17545  214126 1000 +   227596 I
e caeSp111.Scaffold629   485272 68 - 33334924 I

a score=26619.000000
s ce10.chrX             3219797 121 + 17718866 GATTCTAAAAAGTTACCGTAAAAACGCTGGTTTTCCTGAGTCTCATATCTG--CGGCAATGTTTAGGTTTGCAAAAAC-AATATGCGATA----AG---------ACAATCTGTGGGGGACAG------GAAATAAGG-TGATG
s cb4.chrX              8287283 116 + 21540570 gaaatgaaaagattaccgtaaaaacgCTTGATTTCCGGAGTCTCATTT-TGAccgaaat--ttt-------------------cgagagattttagaattaaaaCAACAAC------GGATAGAGTGAACGAATACGGTTGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   384643 107 -  4500979 gaaac-----ggTTACCGTGAAAACGCTTGATTTCTTGAGTTTCATTT-TG--CAGAAT--ATTAGGTTTTGTT-----CATACAAGACGTTTTAG---------AAAAGT------GGACAG------TGAATAAGG-AGATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   485340 123 - 33334924 gataaaaaatatttaccGTATAAACACTTGATTTTCTAAATCTCATCTCTG--CAGAATTGTTTAGgtttgaagaaacaaatatGAGATATCGAAG---------AAATGT---GAGGGGCAG------AGAATAAGG-TGATG
i caeSp111.Scaffold629  I 68 C 0
s caePb3.Scfld02_0      1586237 118 +  4147112 aaaaacaaactgttACCGTAAAAACGCTTGATTTTCTGAGTCTCATCT-TG--CAGAAATGTTTAGGTTTGAAGAAAC-AATGTAATATATCTGAG---------AAAAGT------GGACTG------AGAATAAGG-TGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  214126 1000 +   227596 I

a score=279172.000000
s ce10.chrX             3219918 401 + 17718866 TGGTCG--GAAGAC---GG-AAAAGG--TATGAATGGGAAAAAGAACAATTCA----------CCCCCCGTGAAATGGGTCGAGAAACTGTATCTTACAACCATCTGGACTAC--TTCGAAAT--G---CAAGATTGTGATCAC-AAAGC--ATAT---ACGTTCTTCC-ATTCCAATTTCA-TTTTATTGGGCCAAGC-----------CTA----CTA--------GCGTC--------------AA----------GAAAA---ATGTTTT---TTGTGTGTGTGTGTATATATGTATGTAGTATTT-----TTCTTCCTGAAAAGCAGCAGTGAAATGTACATACCGGAACACCTTCGTATCCTTGTGGCGGCACATATCGAACCTTACGTAAATATACAGCATATATTGCGTCCGGGTGTTTTTCGTCACCCCAGTAACGCGTAGCCATTTAAGATTGGTCTG--AGTTCTTCTGACGATGG--TTTCTCT
s cb4.chrX              8287399 462 + 21540570 TGGTCGGAGAAG-C---CGAAAAAGGTttatgaaaagagaaaagaccAATTCA----------CC-TCCGTGAAATGGGTCGAGAAACTGTATCTGACAACCATCTGGACTACTTTTTGGAATTGG---CGAGATTGTGATCACAAAAACATATAT---ACGTTC--CCAAttccaattttgtttttattataCAAACTTCCCCTTCCCGCTTTCTTCTGTTGTACATACTTA--TTTCCCCTATC-CATCCCTAACAAACACTTCGAGGCTTCGTCTACT-TCTATGTATGCATGTGTGGGTGGtggtatatattttttcctgaatagaTGCA---AAATGTACATACCGGAACACCTTCGTATCCTTGCGGCGGCACATATCGAACCTTGCGTAAATATACAGCATAGATTGCGTCCGGGTGCTTTTCGTCACCCCAGTAACGCGAAGCCATTTAAG--TAGTCTGATAGTTCTTCTTCGGACAG--AGTCGGT
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   384750 387 -  4500979 TGGTCG--GAAG-C---TG-AATAGGTATATGACAGGAGAAAAGAACAATTCA----------CC--CCGTGAAATGGGTCAAGAAACTGTATCTTACAACCATCTGGACTAC--TTCGAAAT--G---TGAGATTGTGATCACAAAAGC--ATAT---TCGTTC--CT-ATTCCAATTTCG-TTTTATTGGCCAAACC-----------CTTTTTCCTA--------ACATG--TCGGCACCACC-AA--CATAAGGCGCAAT---AAGTTTTGTC---------------------------GTggta-----tttttcttgaatag--------aAATGTACATACCGGAACACCTTCGTATCCTTGCGGCGGCACATATCGAACCTTGCGTAAATATACAGCATAGATAGCGTCCGGGTGTTTTTCGTCACCCCAGTAACGTGAAGCCATTTATG--TAGTCTG--AGTTCTTCTGACGATTG---GTCTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   485463 384 - 33334924 TGGTCG--GAAG-C---GG-AATAGG--TAtaaatggagaaaagaacaattca----------CC--CCGTGAAATGGGTCGAGAAACTGTATCTTACAACCATCTGGACTAC--TTCGAAAT--G---CGAGATTGTGATCACAAAAGC--CAAT---ACGTTC--CC-ATTTCAATTTCG-TTTTATTGGACAAACC-----------C------CTA--------ACATCGTCCAGCAGCACC-AA--CAT-AGGCGCAAT---AAGTTTT---TCGT-----------------------TTGgtt-----attttcttgaatag--------AAGTGTACATACCGGAACACCTTCGTATCCCTGAGGCGGCACATATCGAACCTTGCGTAAATATACAGCATAGATAGCGTCCGGGTGTTTTTCATCACCCCAGTAACGGGAAGCCATTTAGG--TAGTCTG--AGTTCTTCGGACGACGATGGTTCTAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1586355 385 +  4147112 TGGTCG--GAAG-C---GG-AAAAGg--tatgaatgagaaaaagaacaattca----------CC--CCGTGAAATGGGTCGAGAAACTGTATCTTACAACCATCTGGACTAC--TTCGAATT--G---CGAGATTGTGATCACAAAAGC--ATAT---ACGTTC--cc-attccaatttca-ttttattggtCAAACC-----------CTT----CTA--------ACATCG-CCAGCAGCACCAAA--CAT-AGGCGCAAT---AAGTTTTTGCTTGT-----------------------GTggta-----tttttcttgaatag--------aAATGTACATACCGGAACACCTTCGTATCCTTGTGGCGGCACATATCGAACCTTGCGTAAATATACAGCATAGATAGCGTCCGGGTGTTTTTCATCACCCCAGTAACGGGCAGCCATTTAAG--TAGTCTG--AGTTCTTCGGACAATGG----TTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  215126 386 +   227596 TGATCG--GAAG-CAAGCG-GATAGG--TatgaaatgaagaaataacaaTTCAATTCACCTTGCC--CCGTGAAATGGGTCGACAAACTGTATCTTACAACCATCTGGACTAC--TTTGGAAT--GGGAAGAGATTGTGATCACAAAAGC--ATATAGAACGTTC--CC-ATTCCAATTTCG-TTTTATTGGGCCGGAC-----------G------AGA--------AAATC--GAGGAAAGAgg-gg------gggTGTAGT---TTGTGGTAGATGGT-----------------------TTGGTA------TTTTCTTGAATAG--------AAATGTACATACCGGAACACCCTCGTATCCTTGTGGCGGCACATATCGAACCTTGCGTAAATACACGGCATATATGGCGTCCGGGTGTTTTTCTTCACCCCAGTAACGGGAAGCCATTTGAG--TTCT-TG--ACGGTTTCGGTTG-------------
i caeJap4.Scaffold17545 I 1000 C 0

a score=-922.000000
s ce10.chrX             3220319 19 + 17718866 ----CACTGATCCTGTTGATTCT
s caeRem4.Crem_Contig0   385137 17 -  4500979 ----AATGGATGTTGTCGATT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   485847 18 - 33334924 ----TCTTGATCTTGTTGTTTC-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1586740 18 +  4147112 ----TCTTGATCTTGTAGATTA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  215512 18 +   227596 CACTTTTCCAGCTAGCCG-----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8287861 26 + 21540570 I

a score=-73810.000000
s ce10.chrX             3220338 725 + 17718866  
s cb4.chrX              8287887 673 + 21540570  
i cb4.chrX              I 26 I 92
s caeRem4.Crem_Contig0   385154 486 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold629   485865 438 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1586758 438 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  215530 507 +   227596  
i caeJap4.Scaffold17545 C 0 C 0

a score=-4763.000000
s ce10.chrX             3221063 15 + 17718866 TT---------------------------GAAATAAAAAAAA
s caeRem4.Crem_Contig0   385680 15 -  4500979 TT---------------------------GGGATAATCAAAT
i caeRem4.Crem_Contig0  I 40 I 7
s caeSp111.Scaffold629   486303 42 - 33334924 ataTCTAATGTTCAAAAGTTTCGTATAcaggaatcaaaaaag
i caeSp111.Scaffold629  C 0 I 20
s caePb3.Scfld02_0      1587196 13 +  4147112 -----------------------------ggaagaaggaaaa
i caePb3.Scfld02_0      C 0 I 532
s caeJap4.Scaffold17545  216037 15 +   227596 -----------TCAGAC------------GGAATATAt----
i caeJap4.Scaffold17545 C 0 C 0
e cb4.chrX              8288560 92 + 21540570 I

a score=-2392.000000
s ce10.chrX             3221078 38 + 17718866 -----TTATGTCACTGCTTGTGAGCAAAGGAAA------TAAAAAAATA
s caeRem4.Crem_Contig0   385702 26 -  4500979 -----TCATTTGATTGAT------------AAA------TTGACAGATT
i caeRem4.Crem_Contig0  I 7 I 30
s caeSp111.Scaffold629   486365 23 - 33334924 -----tcttttggttgca------------aaa---------aataatt
i caeSp111.Scaffold629  I 20 I 31
s caeJap4.Scaffold17545  216052 37 +   227596 ttgtattaattttttgaa------------aaaacagggAAGAAAAACG
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1587209 532 +  4147112 I
e cb4.chrX              8288560 92 + 21540570 I

a score=-6996.000000
s ce10.chrX             3221116 53 + 17718866 AATGAAGTCTCTTCAC---AAAATTCAAGAATTTTCTCAGTTCAAAAGC----------GTTTATG
s cb4.chrX              8288652 44 + 21540570 AGTCacgtttctcga----aaaatttcggggt-----------AAGAAC-------tgagtttttt
i cb4.chrX              I 92 C 0
s caeRem4.Crem_Contig0   385758 48 -  4500979 GATATCAATCCTAGGCAACAAACATTAGGAGT-----------GAAAAT-------agggattttg
i caeRem4.Crem_Contig0  I 30 I 6
s caeSp111.Scaffold629   486419 42 - 33334924 aattaaattcaTG------AATGATTAAGGAG-----------AAAAAT-------ATACATTTTG
i caeSp111.Scaffold629  I 31 I 12
s caeJap4.Scaffold17545  216089 34 +   227596 ---------------------Agtacagaaat-----------aaaaatcagcGGAAGCGATTAGG
i caeJap4.Scaffold17545 C 0 C 0
e caePb3.Scfld02_0      1587209 532 +  4147112 I

a score=-18249.000000
s ce10.chrX             3221169 214 + 17718866 -TCGTTCTCAAA-------AGTAC---------------------AGATTCTCGAACAGT---TTTGGCTTT-T-------CCAAAAGACACAAAAGGGAAACGAAGAAATGATAAATGG---------------AATGTGATGACAAAGG--TAAACGAATATGG------AAATGAGAGGT-------------AAC-----GGTGCCGAC------------------CAAA-------CGGAAAAAA---------ATGAAACATCATCCG---AA--------ATGAGATTGGA-----------------------AAA---GAGATGCGGATTC---TGGA----------------------------------------AC-----------GACACAAAAAAAAACT--CGG
s cb4.chrX              8288696 288 + 21540570 -tcatttctcca----gtaaattg---------------------aaaattccgaacaCCACATCTGACTTT-CGAGAGGTTGGAATACAGGAATATTgaattgaaaagatgaaaaatgg---------------aaagtgaTGACAAATGTATAGACGAATATGG------AAATGAGAGGTAGAAATTGAATACACC-----GGTACAACA---------ACGTCACGGTTGG-------AGGTaaaaaaaaGTAACAGTGAAACATGGAGAATGGAA--------TTTGGATTGCGGTTAACGGAAGCGAAttccgttgaaa---aaaaaaggtatgT---GGAA----------------------------------------AA-----------GGAGCGTTGGTAAGCTGACag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   385812 269 -  4500979 -tcattctggaaaattgtGTATTG---------------------TAATTATCGAACACTACAGACG--TTT-c---aggtaaaaaaaaagaaaagggaaactAGGAAGATGACAAATGG---------------GAAGTGATGACAAAGG--TAGGCGAATCTGG------AAATGAGAGGTATAAATTGAATGCAAC-----GGTACCGTAC--------ACAACACAACTAG--------GAAGACAAATGGAAACAACGAA-------------AA--------TCCGGATTATGTT-------------TCTTTCTGGAA---AAGATAGACA-AT---GAAA----------------------------------------AACTTAGAAGCACGGAAGTTTAAAAAACGGATTG
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   486473 261 - 33334924 -------TCGAG----AAACATTCA------------TAAACGACAGAATCCGGAACACT---TTTGACTTT-C---GAGTGg---taggaaaaagagaaaatagaaagatgACAAATGG---------------AAAGTGATGACAAAGG--TAGACGAATATGG------AAATGAGAGGtagaaattgaatataaC-----GGTa-----------------aaaaaacagg-------cggaaaaaaaCGG-----ATGAAACATGAACAG---AATCAGAGATTTCGGTTTGCGGAATA-----------CTTTCTGACG---GAAAGACCGTTTT---GAAA----------------------------------------AC-----------GGAAGTACAGAGAATTAATAA
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0      1587741 276 +  4147112 -tcgttttcaaa----agagattc-----------------cagaaaattcccgAACACT---TTTGACTTT-C---GAGtggaattgaacaaaaagggAAACAGAGAGATGACAAATGG---------------AAAGTGATGACAAAAG--TAGACGAATATGG------AAATGAGAGGTACAAATTGAATACAAC-----GGTACcgac---------cagaaaaaaaaggaaaaagtaaaaaaaaaatgg-----atgaaacaTGAACAG---AA--------TTGGGTTTGCGGAAAA----------TCTATTtcacg---gaaaaaaatgtttcgagaAA----------------------------------------AC-----------GGAAGCAgcgaaaattagaga
i caePb3.Scfld02_0      I 532 C 0
s caeJap4.Scaffold17545  216123 373 +   227596 ATAACTGCAAAAGGAGAAGAATAGGTGGGAATGGTTTTAATGGAAAAAGTTGAGGGTGTGGCGGTTGGTTTTAC---GGATAACAATAAACGATGAGATGGGAAAAAAGAGGAGGAGTGGTATACGTATACATACAGATTCACAacaaaaa--ggaagaaaaatcaCTCATCGGATAAGGTGTTGAGATTTTGCATTATCTTTGGGTTTCATCAACTGTTGGAAGTGATGATAGT-------AGGTCAGGGATAG-----TTATAAGAGGaaaga---ga----------gagatagagagaga---aaatacacatttttgaagcttaaAATTAGCCTTT---GACATTTTAGATTTctcaattattgtgttttcaatcgatttgcgac-----------atgagaacgcgaaact--ccg
i caeJap4.Scaffold17545 C 0 I 97

a score=-1555.000000
s ce10.chrX             3221383  83 + 17718866 AAACTAA----------------------TACTGCAGAGTTTCA--CAGAAAACGG------------AGAAATATTAAGGGTGTGGTAGTTTTTC-GGAAAAGAGACTGGAAAACGGGG
s cb4.chrX              8288984  92 + 21540570 ataaaaaaattaggatttgtTAGAA----AATGGCTGAGTTGGATTTGAAAAGAAGTTC-----------GTACGTGGAGGGTGTGGTCGGCTTCT-------------GGATGAAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386081 100 -  4500979 AAATTAACACACGGattgaaaacaaatggaaTGTCTAGGTGGAA--TGGAGTGAAATTCC-----AGGAAAAACTGAGTGGGTGTGGTGgttttcc-------------agatgaaaaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   486734  99 - 33334924 GAACAAACTG-------------------GAGGTCTGGGTGGGA--TAGAAAATGGTTCACCAGGGGCAAAATTCAGGAGGGTGTGGCAATTTTCTCGGAACAGATATTGCagaaaactg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1588017 104 +  4147112 aatcaaaatgagaga--------------aatgtCTGGGTGGGA--TAGGAAACTGTTTCCAGGAGGCAAAAATTTGAAGGGTGTGGTGACATTCCTGGATgaaacacaagaaagaacga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  216496  97 +   227596 I

a score=-5271.000000
s ce10.chrX             3221466 52 + 17718866 GCAAA-AAAATGGTGAC---------G-----------AAAAGAATAA------TGAAGAAAAAAA-----------ACGAAAGATACAA
s cb4.chrX              8289076 74 + 21540570 AGGGATGGATTGAGAAATATc-----g-----------ggaagaacaaaaaattggaaaaaatggataaGACAAAccatgaaacctgtaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386181 64 -  4500979 tgaga-aaacggagaaatgtctaaatg-----------agaagaagaaaaa---tgaagaaataga-----------acaaaagCTGGAG
i caeRem4.Crem_Contig0  C 0 I 76
s caeSp111.Scaffold629   486833 61 - 33334924 ggaga-aaaatgggaga---------a-----------aaaagaagaaaacgtatggtaaag-aaagaaa-------atgaaaaggtaAC
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1588121 73 +  4147112 gacga-aaattgagaaa---------gtcagagaaattggaagaaaaagaagtgagaaaaagtaaagctg-------atgaaaagttgag
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17545  216593 50 +   227596 ----a-caatctaatat---------t-----------taaaaaaaaaattatttggaaaac---------------aaaaaaaatgcaa
i caeJap4.Scaffold17545 I 97 C 0

a score=-4738.000000
s ce10.chrX             3221518  6 + 17718866 -----------------TAAGAG-------
s cb4.chrX              8289150  4 + 21540570 -------------------taga-------
i cb4.chrX              C 0 I 666
s caeSp111.Scaffold629   486898  6 - 33334924 -----------------TATGAA-------
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1588198  6 +  4147112 -----------------aatgaa-------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17545  216643 30 +   227596 cgcggtgtttgcgtacttttgaaaatttaa
i caeJap4.Scaffold17545 C 0 C 0
e caeRem4.Crem_Contig0   386245 76 -  4500979 I

a score=-10676.000000
s ce10.chrX             3221524  76 + 17718866 ATGGGAAGAAAAA-----------TAACAATA--------------------------CTTCTTTACTTCTTGGAATCTAACAGTTTAATGAAAAGTTT-AAAAT------------------TTTT----TTAAA
s caeSp111.Scaffold629   486904  92 - 33334924 TCATTATCAAAACTGTACGGAAGCTATCTAAAAGGTCAAGGGAATTCGTTT-------TTAAtttatctc------------attttatt----tgttc-caaat----------------tatttt----gtaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1588204 120 +  4147112 TCACTATCAAAAT---------ACCAACAAAATAATTTAGGAAAACCatgttcaaaagttgattCATCTCAAAGAACaca--attttgat----agttt-caaatAGAATATTGGACCCTATACTTCAACGGTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  216673  86 +   227596 ----------------acggcaatgaaagaaacagtt---------------------cccattttcgtttga---------attttaaa----agtacgcaaacaccgcgttgaattttttgttttcacaataaa
i caeJap4.Scaffold17545 C 0 I 19
e cb4.chrX              8289154 666 + 21540570 I
e caeRem4.Crem_Contig0   386245  76 -  4500979 I

a score=-7123.000000
s ce10.chrX             3221600 37 + 17718866 CAAATCACTACAGTTATTTGA----TTTGAAAACATATAAT----------
s caeRem4.Crem_Contig0   386321 31 -  4500979 CGAGAAACAACAGTTATttcc----aaacagaaaa----------------
i caeRem4.Crem_Contig0  I 76 I 23
s caeSp111.Scaffold629   486996 34 - 33334924 -------caatttttccgccgaaattaataaaaaataaaag----------
i caeSp111.Scaffold629  C 0 I 39
s caePb3.Scfld02_0      1588324 30 +  4147112 -------CTATTTTCACTTTA----TACCAGAACAcacatt----------
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17545  216778 51 +   227596 CAAATCGCCATTGCTTGTTTAGATGTTTTAGAGCATCATATATAACAACGT
i caeJap4.Scaffold17545 I 19 C 0
e cb4.chrX              8289154 666 + 21540570 I

a score=35722.000000
s ce10.chrX             3221637 142 + 17718866 CCAGAAA---AT-----ATAACAAAAATCA----------------ACTGAACGTCATTATTTCCCAT----GGCGTCAATTTTCCCACAACG-AGGAAAATGAAAGCTGTT-TAAA--AGTAAAAACAGGTTGAATACA---TCCCAA-AAA-GTACCGACGAGACGG--CTA-----------------G----AAAAAC-
s cb4.chrX              8289820 162 + 21540570 -CCAAAAAGTAC--------ACGGAAAGAA----------------AGAGAACGTCATATTTTTCCGGCCAAGGCGTCACTTTTCCCATGATG-GAAGAAATGAaagtttgt-------tgaaaaaacgAGTTAAACGTA-TCTCCGTC-AAATGTACAGA-GATAGAAATAACGGTCTGAccgcagagaaa----aaaaac-
i cb4.chrX              I 666 C 0
s caeRem4.Crem_Contig0   386375 151 -  4500979 -CCGAAA---AC--------ACGTAGAACA----------------AGCGAACGTCATCATTTCCCAG----GGCGTCAACTCTCCCATGACA-AAATGAATGCAAAGTGGcgcaaaaagcaaaaaacgaGTTAAACGTA---TCCGAC-AAA-Gtacaga-aaagtga--aaagaccTGACCGC------A----AAAAAC-
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold629   487069 151 - 33334924 cagaaaa---ac--------acCGGAGAAA----------------ACAGAACGTCATCAATTCTCAA----GGTGTTAATTTTCCCATAacgaaaaggaaagaaagtgggcggaaa--AGCGAAAACGAGTTGAACGTT---GTCGAC-AAA-GTACATACGGGAGGA--AGA-----GACcgc------aaaataaaaac-
i caeSp111.Scaffold629  I 39 C 0
s caePb3.Scfld02_0      1588396 152 +  4147112 CCTGAAA---AC--------ACGGAAGAAA----------------ACATAACGTCATCATTTTCCAA----GGCGTCAATTTTACCATGAcg-aaagaaatgaaagtgGGCGGAAA--AGCGAAAACGAGTTGAACGTA---TCCAGCAAAA-GTACAGGCGAGAGGA--AGAGACCTGACCGC------A----AAAAAC-
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold17545  216829 158 +   227596 -CTAAAA---ATGAACAGTGACAGAAAGCGCGATTCAAATTAAAATGCAGGAAATCATAA-TTCTCAA----GGCGTCAACTTTCCCATAACA------AGTGAAATCTG---------GACAAAAACGAGTTAAACACTTTTCCCTAC-AAA-AGGTGGGTGGCAGCA----------GACATCT-----A----GACAACC
i caeJap4.Scaffold17545 C 0 I 15

a score=4462.000000
s ce10.chrX             3221779 15 + 17718866 CTTTGATTTTGTTA----------------G
s cb4.chrX              8289982 31 + 21540570 cacttaTTTCGTTAATATGGAAGTAGTGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386526 17 -  4500979 CATTGATTCCGTTACT--------------G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   487220 22 - 33334924 cattGATTCCGTTAATATGGAA---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1588548 22 +  4147112 CATTGATTTCGTTAATATGGAA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  216987 15 +   227596 I

a score=125564.000000
s ce10.chrX             3221794 398 + 17718866 ACGGT----TGGAGAAAACAATA--------TATGTAAAATTAGTTGAAAATG-------------GATAGAGAGAATGTAGTAGCAGAAAAAAAATTGGGAGAAGATTGATTGAA------AAAG-----GAAAAGACAGTGG----AATGAGGTTGATGCAATGTAGGAAATTCATTCGCAAGGTCACCGTCCCGCTAGATACTACTTCGAACAC------GG-CCGTTCGAATTGTGCCTTC--------------------CTGGATTTTGAAAAAAAATTATCTCTTGAAA---------AGTCGCAATTATTGGAAGATCAAAATTT----------------TATATAAGAAAACGATAATCAAGCTGCTAGCA---------ATGTTTTTTGGGTCCCGGAAATTAGTCT--AGCGACAAGAAACCGAGATTAGCGACAATGATAATGT-----GAAGGAGTGGTGATAG-AGATAATGAGACAGAATGAAACTGACAA
s cb4.chrX              8290013 384 + 21540570 GTAG-----CGGTGAAAACAATA----TATGTATGTaaaattagtcgaaattg-------------ggtaga--------aaaaagggaagaa----------aagattgattggaagaaataaga------aaaagacaGTTGTGAAATTGAGGTTGTCGCAATGCAAGAAATTCATTTGCAAGGTCACC--------AGATACTTTTTCCACAGTTCCACGGGCCCTTAGAAAGTGGTCCAC-------------ATTAATAAGTGGGTTTTGTTTATCCCT-CCCGTTAGAAA---------AT-----TGGATTGATGCACTGTTATT-------------------CGGAGGAAAACGACaagaaaaaacccaaaaatctaaT--TTGTTTAT---TTCCCGGAAATTAGTTT--AGCGAC---AGGACGAGATTAGC------GATAATGT-----TTAGTGGTGATAGTGG-TGATAATGAGACAAATTGAAACTGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386543 397 -  4500979 GTG-------GGTGAAAACAATA----TGTGTATGTAAAATTAGTCGAAA-TG-------------GGTAG---------AGTagggaaaaaa----------aagattgattgga------aaaa------gaaagacattGG----AATGAGGTTGACGCAATGTAGGAAATTCATTCGCAAGGTCACCAGTCCGCTAGATACTACTTTCAACACTTTTCGGCCCCGTTCGAATCGTCCCATT--ATTCACT--GATTGTTAGGTGCCCATTGTTTGTACTTGATTACTAGAAATTATCTTGTAA-----CAGATTGAATTAGCGAGAAT-------------------TGG-GGAAACCGATTATAATTGGACAAAAAAGCTATTGGGTGTTTTT---GTCCCGGAAATTAGTCT--AGCGAC-----GACGAGATTAAC------GATAATGTG----GGAGGAGTGGTGATAG-TGATAATGAGACAAAATGAAACTGACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   487242 376 - 33334924 -TGG-----TGGTGAAAACAATA--TGTGTGTATGTAAAATTAGTTGAAA-TA-------------GGTGg---------agtag-aaaaaaa----------gagattgattgaa------aaaa------ggaagacaTTGG----AATGAGGTTGACGCAATGTAGGAAATTCATTCACAAGGTCACTATCCCGCTAGATACTATTTCCAACACTTTTCGGG-CCGTTCGGATTCTCTGATTGAGTTCAATTGGAtgcttttttgagttttg----------attaCTAGAAATTATCGTCTAG--AGAAATACTAACAAATCAA-----------------------CGGCTACGAACCGTTAGTTGTGGGTTCGC----------GTGTTTTT---GTCCCGGAAATTAGTAT---------------TGAGATTAGC------GATAatgtg---aaaagaaatgatgatagTTGATAATAAgataaaatgaaactgaCAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1588570 400 +  4147112 GTGG-----CGGTGAAAACAATA----TGTGTATGTAAAATTAGTGGAAA-TG-------------GGTAG---------AGTAG---GAAAA----------gagattgattgaa------aaaa--aaagaaaagacagtGA----AATGAGGTTGACGCAATGTAGGAAATTCATTCACAAGGTCACTATTCCGCTAGATACTACTTCCAACACTTCTCGGG-CCGTTCGGTCTGTCCTATT-AACTCATTCGGAGTTCCAAttggtcacttttttgttttcattgctAGAAATTAGCACCCAAtcattaaaatgaaaaaagcg-------------------------gTCGGCGAACGGTTAGTTGTTGGCAAGCAATTG-----GTGTTTTT---CTCCCGGAAATTAGTCT--AGCGAC-----AACGAGATTAGC------GATAATATG--TAGAATTGGTGGTGATAGTTGATAATGagacaaaatgaaactgacAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  217002 427 +   227596 ----AAGCCGAGTGAAAACAATACTTATGAAGGAGGAGAATCGGGagaaaatgaaattgaaattgaaattg---------ggtag-gcaaaaa----------aagattgattgaa------aaaaaaaaagaaaagacagtGG----AATGAGGTTGACGCGATGTAGGAGAATCATTCGCAAGGTCACCACCCCGTTATACACTACTTCCAACACATTTCGGG-CTGTTCGGACTGATTTGCC--------------------CTTGCTATTGTTTTG-----ATTGCCAGAAAGTATAATG-AGGTGGACAGTTTGACATAGCGATATATATATACTTTTTCCAAACGAAgagggaaaaaataaagataaatGGAATA---------TGGTTTTC---CATTCTGGAAGAAGTCTTTTGTGGTCGCTGAACGAGATTTGC------GATAATGCGATAGAGGATGATAGTGTTAG-AGATGTTGATACAAAATGAAACTGACAA
i caeJap4.Scaffold17545 I 15 I 3880

a score=8249.000000
s ce10.chrX             3222192 26 + 17718866 GGCAACAGAATTAGTGGAAGAAAAAA
s cb4.chrX              8290397 21 + 21540570 CAC-----ATTTCATGGGAGAGGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386940 26 -  4500979 CACAACAGAATTAGtggaagaagcag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   487618 26 - 33334924 GACAAGAGAATTAGTGGAAGAAACAA
i caeSp111.Scaffold629  C 0 I 378
s caePb3.Scfld02_0      1588970 22 +  4147112 CACAAGAGAATTAGTGGAAGCA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I

a score=180.000000
s ce10.chrX             3222218 1 + 17718866 A
s cb4.chrX              8290418 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   386966 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 286
s caePb3.Scfld02_0      1588992 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I

a score=-1997.000000
s ce10.chrX             3222219 5 + 17718866 CAAAG--
s cb4.chrX              8290419 5 + 21540570 -GAATG-
i cb4.chrX              C 0 I 43
s caePb3.Scfld02_0      1588993 5 +  4147112 --CATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I
e caeRem4.Crem_Contig0   386967 286 -  4500979 I

a score=-290.000000
s ce10.chrX             3222224 59 + 17718866 GCAAAGAAGATGGTGTAGAAATTAAAACAAGTTGGTGTCATGCAATTGTACTTATTATT
s caePb3.Scfld02_0      1588998 36 +  4147112 gcgaataaaa-----------------------agtttactgctaatttgttcatttct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e cb4.chrX              8290424 43 + 21540570 I
e caeSp111.Scaffold629   487644 378 - 33334924 I
e caeRem4.Crem_Contig0   386967 286 -  4500979 I

a score=-5226.000000
s ce10.chrX             3222283 165 + 17718866 -------TTTATACTATTCATTATCCGTATTAGTTTTTAGAGGGTCAACAATTATGGAAGTAGtaaataaaatatttt-----aaaaaaattCAAGACGTATATATTTTTTTGATTGCAGTTAGAAAAAAGAAATCAAGGAAAAGAAAGAAGAATACAAAACAaaaataaacaattg
s cb4.chrX              8290467 101 + 21540570 -------tttattctatttttgaggtacttctgatattat----------aaaATGAAACACTCCAACCAGAAGTTTT----------AACTAGAG-----TAAATTGTGCggg--aaaattaaataaaattaca------------------------------------------
i cb4.chrX              I 43 C 0
s caePb3.Scfld02_0      1589034 165 +  4147112 cgtttctttttcctcaCTTTGTTTCTCTTTCCAGTGTTAT----TtaataaaaacagaagaattcaAT--GTTGTTTTGTTCAGGAAAAATTAGAG-----AATGTCatattggaaaaaactgaaaacagtggcagaaaagagag-aagagagacatagaacaataaaaaatacttG
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I
e caeRem4.Crem_Contig0   386967 286 -  4500979 I

a score=-1773.000000
s ce10.chrX             3222448 574 + 17718866  
s cb4.chrX              8290568 408 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1589199 148 +  4147112 I
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I
e caeRem4.Crem_Contig0   386967 286 -  4500979 I

a score=1157.000000
s ce10.chrX             3223022 116 + 17718866 -------------AAAAAGAAACTAAAGCA----CGACTATTGAAAAATGAGAGTTTAGAGCAATGCGGAAGCATAATATTT---CTCTCAAA-AAAATTTTTGTGTATACGAATCAGAACTCAAAACTAATAAACA
s cb4.chrX              8290976 106 + 21540570 AAACCCCATTTATTAAACATTCATAAAAGAGTGAGGAACACAATACAA-------------AAATGCGGAAGCATTCCG---------------CCCTACGTTTTGtatacaaaatcaaa---aaaactaataaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   387253 105 -  4500979 -------------AAAAAGGGGcgaaaaaagttgtgatcATTGAAAAA-------------CGAAGCGGAAGAATTTTGTTTAAACTCtcaaatccattttttttgtatacaGA---TAG---AAAAgtaataaaca
i caeRem4.Crem_Contig0  I 286 C 0
e caePb3.Scfld02_0      1589199 148 +  4147112 I
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I

a score=-4546.000000
s ce10.chrX             3223138 60 + 17718866 AAACAAAAAGTAAGAGGATCCCCCAATTCCAACAAACACACACACATACACAATTATTAT
s cb4.chrX              8291082 33 + 21540570 aaacaaaa--tgagg---------------gaaaaaGACTGAAA-------GATTTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   387358 40 -  4500979 aaa-aaca--tgtgGAG---------CTTTGTCCAACACTTAAA-----ACGATTAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1589347 48 +  4147112 aaacaaaagttttgaga---------gctcactcaactctcaaaaaaagacaattag---
i caePb3.Scfld02_0      I 148 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   487644 378 - 33334924 I

a score=147405.000000
s ce10.chrX             3223198 459 + 17718866  
s cb4.chrX              8291115 536 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   387398 443 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 239
s caeSp111.Scaffold629   488022 451 - 33334924  
i caeSp111.Scaffold629  I 378 C 0
s caePb3.Scfld02_0      1589395 439 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I

a score=-1802.000000
s ce10.chrX             3223657 18 + 17718866 TATTCATTTGTTCATTTT
s cb4.chrX              8291651  2 + 21540570 -------------AA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   488473 17 - 33334924 GAGACA-TTTTTTATCTT
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1589834 18 +  4147112 GAGATAtttttttAACTT
i caePb3.Scfld02_0      C 0 I 132
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeRem4.Crem_Contig0   387841 239 -  4500979 I

a score=-682.000000
s ce10.chrX             3223675 24 + 17718866 -TCCATGT--ACTAATCTATGTTTTTT
s cb4.chrX              8291653 14 + 21540570 AGTCTTTT-------------TTGATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   488491 26 - 33334924 -ACCATTTGCACCTAATTGTGTTGTTT
i caeSp111.Scaffold629  I 1 I 289
e caePb3.Scfld02_0      1589852 132 +  4147112 I
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeRem4.Crem_Contig0   387841 239 -  4500979 I

a score=-6632.000000
s ce10.chrX             3223699 947 + 17718866  
s cb4.chrX              8291667 874 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1589852 132 +  4147112 I
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   488517 289 - 33334924 I
e caeRem4.Crem_Contig0   387841 239 -  4500979 I

a score=-4052.000000
s ce10.chrX             3224646 130 + 17718866 ATAGTTTAAAAAATTAAAAGAAAATGGAGAGATTGGATGCCACAGTACAACAAAATGAAAACAATTTTGTAAGAAGCACATACATGGTGACATGAA-----------AAAAACTTACATAATTCTATCAAATTATAGTGAG------
s cb4.chrX              8292541 116 + 21540570 atattttaaattttaaaggaAACCTGTCAAAAT------CTTGAACtcgagaaaaccaaaa-aatggtacagtaagc---cgtttggaaa----aatgtct------aaacagtca-----------aaaattaaataaaaagtCGG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1589984 115 +  4147112 ATAGTGggaagaaataagaaacaaTGGGAGAA-----------AAGCCAAGCAATCGGAGA-ATTTTTATCGTGAAG---CATATAATGATGggaatttccattgaaaaaaattga-----------aatgttatactgaa------
i caePb3.Scfld02_0      I 132 I 7
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeSp111.Scaffold629   488517 289 - 33334924 I
e caeRem4.Crem_Contig0   387841 239 -  4500979 I

a score=-4214.000000
s ce10.chrX             3224776 44 + 17718866 AATTTGATAAAAACTGAAAGTTAGTTAAA-------TTTACTGGCGAGGCG---
s cb4.chrX              8292657 27 + 21540570 -----------------GAGTTGTTAGAA----------AAGGATGAGAGAGCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   488806 45 - 33334924 aatTTGCTTTCAGTTTAATGTTATTGAAA------GTTACCAAATGACAGT---
i caeSp111.Scaffold629  I 289 C 0
s caePb3.Scfld02_0      1590106 46 +  4147112 aat---attgaagtt--ATATTATTGGAATGGCTCGTTAACTAACGGCAGC---
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I
e caeRem4.Crem_Contig0   387841 239 -  4500979 I

a score=13687.000000
s ce10.chrX             3224820  92 + 17718866 --AGTGCTAAGTTAAGCGATGGAAATGTTCAAACAAAAAAGTTCAAAAAGTAAATAATAAGTCGGGAGTTGGAAAGAGATGAG------------AAGAAAGTTCC
s cb4.chrX              8292684  21 + 21540570 ------------------------------------------------------------------------AGAGTGACGGG-------------AAAAAGTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   388080 104 -  4500979 AGTGAGAAAGT-AAGctgttgaaaatgttcaaacaaaacggtttcaaaagtaaataaaaagTCGGGAGTT-GAGAAAGATGGGGTAGCTGGGAGGAGGAAAGTTCC
i caeRem4.Crem_Contig0  I 239 C 0
s caeSp111.Scaffold629   488851  90 - 33334924 --TGGGCAAAAGAAAGCTCAGAAAGTGTCCAAACACAACGGTTT-AAAAGTAAATAAAAAGTCGGGAGTT--GAAAAGATGGG-----------AAGAAAAGTTCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1590152  90 +  4147112 --AATGCAGTA-AAAACTAAGAAATAGTCCAAACAAAACGGTTTCAAAAGTAAATAAAAAGTCGGGAGTT--GGAAGGATGGG-----------GAGAAAAGTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  217429 3880 +   227596 I

a score=225384.000000
s ce10.chrX             3224912 431 + 17718866  
s cb4.chrX              8292705 445 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   388184 382 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   488941 378 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1590242 379 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17545  221309 386 +   227596  
i caeJap4.Scaffold17545 I 3880 I 421

a score=3591.000000
s ce10.chrX             3225343 6 + 17718866 TGATGT
s cb4.chrX              8293150 6 + 21540570 TGAGGT
i cb4.chrX              C 0 I 98
s caeRem4.Crem_Contig0   388566 6 -  4500979 TGATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   489319 6 - 33334924 TGATGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1590621 6 +  4147112 TGATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I

a score=1686.000000
s ce10.chrX             3225349 5 + 17718866 GAGAA
s caeRem4.Crem_Contig0   388572 5 -  4500979 AAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   489325 5 - 33334924 AGGAA
i caeSp111.Scaffold629  C 0 I 147
s caePb3.Scfld02_0      1590627 5 +  4147112 AAGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I

a score=-1426.000000
s ce10.chrX             3225354 3 + 17718866 GTG-
s caeRem4.Crem_Contig0   388577 3 -  4500979 -TTG
i caeRem4.Crem_Contig0  C 0 I 178
s caePb3.Scfld02_0      1590632 1 +  4147112 --T-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I
e caeSp111.Scaffold629   489330 147 - 33334924 I

a score=823.000000
s ce10.chrX             3225357 22 + 17718866 GAGAGTCGGAAAATTATTATTC
s caePb3.Scfld02_0      1590633 22 +  4147112 GTCAGTCGAAGTATTGTAATTC
i caePb3.Scfld02_0      C 0 I 90
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I
e caeSp111.Scaffold629   489330 147 - 33334924 I
e caeRem4.Crem_Contig0   388580 178 -  4500979 I

a score=0.000000
s ce10.chrX             3225379 996 + 17718866  
e caePb3.Scfld02_0      1590655  90 +  4147112 I
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156  98 + 21540570 I
e caeSp111.Scaffold629   489330 147 - 33334924 I
e caeRem4.Crem_Contig0   388580 178 -  4500979 I

a score=934.000000
s ce10.chrX             3226375 15 + 17718866 AATTGAAATTGAAAA
s caePb3.Scfld02_0      1590745 15 +  4147112 AAGTGAGATTGAAAG
i caePb3.Scfld02_0      I 90 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I
e caeSp111.Scaffold629   489330 147 - 33334924 I
e caeRem4.Crem_Contig0   388580 178 -  4500979 I

a score=594.000000
s ce10.chrX             3226390 12 + 17718866 TATATCAAATTG
s caeRem4.Crem_Contig0   388758 12 -  4500979 TGTTTCAACTGG
i caeRem4.Crem_Contig0  I 178 C 0
s caePb3.Scfld02_0      1590760 12 +  4147112 TAAATGAATCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I
e caeSp111.Scaffold629   489330 147 - 33334924 I

a score=-488.000000
s ce10.chrX             3226402 6 + 17718866 GAGCAC--
s caeRem4.Crem_Contig0   388770 6 -  4500979 --GCGCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   489477 6 - 33334924 GAGTGT--
i caeSp111.Scaffold629  I 147 C 0
s caePb3.Scfld02_0      1590772 4 +  4147112 --GTGT--
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17545  221695 421 +   227596 I
e cb4.chrX              8293156 98 + 21540570 I

a score=41704.000000
s ce10.chrX             3226408 220 + 17718866 AGGATCAAATAACTT---TTAGGATCAAGTTATTGACCAACGATCGGAAATGATAAACAA---AATATAT--TTTGAGTTAAAAGTTACGCTTAACTTTTCATTTGTCAATATACACATTTATTATACAATCGCAACATTTG-ACAGAATACACTAAACCTTATCAGT-TAGTGAGAGTCTTCCAGAGCATTTGCCAA-CGAGAAAGTAGAAAAGA-----GCTCAAAAAAAA-----------GTA---
s cb4.chrX              8293254 218 + 21540570 AAGATCAAATAACTTTGAATCAGATCGAATTATCGACCAATGAGCACAAATAATAAACAACcgaaagatt--ttgaaagttctcaTTTTCAACGTGACA--GTTTTGCAGTATATACAAT-----------CGTAATA-TAAAACACAACGTATTAAACCTTATCAGT-TATTGAATGTTTCTATAAGCAGGTGTTAGTTGGAAAAGTGCa-aaatttgttgtggtgaaaaaa-----------att---
i cb4.chrX              I 98 C 0
s caeRem4.Crem_Contig0   388776 221 -  4500979 GAGATCAAATAACTC---ACAGGGTCGAATTATCGACCAATGAGCACCaataataaacaa---aaactttcCTTCAGAGTTC-----CTCAGTGAAACAACATTTTACGATATACACATT-----------CGCAACATTAGTATAACACGCACTAAACCTTATCAGT-TTCTG--CTTTCTCGAAAGCAAGTGCTAA-CAAAAAAGTACATAAATGCTTTGTTGGAAACAAATATTCTGGACTGTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   489483 194 - 33334924 GAGATCAAATAACTC---TTAGGATCGAATTATCGACCAATGAGCAGAaataataaacaa---aaacttt--cta--------------tcataaaataatatttggCAATGTACACATG-----TACAAACGCAACAATTG------TCGTACTAAACCTTATCAG--TATTCAAACTTCTTGAAAGCATGTGCTCA----AGAAGTGCAAGAA------AAAGTGCAAGAA-----------ATAACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1590777 208 +  4147112 GAGATCAAATAACTT---TCAGGATCAAATTATCGACCAATGAGCAgaaataataaacaa---aaacctt--ttgaagtt-------ttccctAAAATATAATTTGACAATACACACTT------------TGCAACATTTG-ACGATTCGCATTAAACCTTATCAGCATGTTTTAGTTTCTTGATAGCATGTGTTTA-TTTAAAAGTACAGAAAT--GGTCAAGgattaaaa-----------ataata
i caePb3.Scfld02_0      I 1 I 91
e caeJap4.Scaffold17545  221695 421 +   227596 I

a score=-5253.000000
s ce10.chrX             3226628 36 + 17718866 CATATGA----GAATACCTATTCGGAACGCTT----GAA-----CTCAT----
s cb4.chrX              8293472 29 + 21540570 -----------caaaaag---atgaaacattttttcgaatgaa----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   388997 34 -  4500979 -----------CAAAAAgtgtttgaaacattt----gaggGATGCTCAT----
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold629   489677 46 - 33334924 ---AAGgcttagaaaaaatatgggAAAAGTTC----AAGGAATTTGCAATAAC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1590985 91 +  4147112 I
e caeJap4.Scaffold17545  221695 421 +   227596 I

a score=-241.000000
s ce10.chrX             3226664 29 + 17718866 CTTTCGATACTTGGAACACGAGC-AAGAAC-----------------
s cb4.chrX              8293501 25 + 21540570 -----aaaaagtgaaacaggataaaaGGAC-----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   489723 47 - 33334924 CTTCTGATATTTGAAACATGCACAAAGAATGATTCggtggaagaaag
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1590985 91 +  4147112 I
e caeJap4.Scaffold17545  221695 421 +   227596 I
e caeRem4.Crem_Contig0   389031 21 -  4500979 I

a score=-6509.000000
s ce10.chrX             3226693 24 + 17718866 AAGAAGCTCAATGTCTGGCTCGCC-------
s cb4.chrX              8293526 23 + 21540570 -------AAAATGTGTTTCTT-CCGGTAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   389052 19 -  4500979 ----AAGAAAATAAAGT------CGG--GAg
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold629   489770 21 - 33334924 aaggaaaaaaatgattt------cgg--A--
i caeSp111.Scaffold629  C 0 I 10
e caePb3.Scfld02_0      1590985 91 +  4147112 I
e caeJap4.Scaffold17545  221695 421 +   227596 I

a score=49.000000
s ce10.chrX             3226717 3 + 17718866 ----AAA
s cb4.chrX              8293549 7 + 21540570 AAAGGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   389071 7 -  4500979 gaagaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   489801 3 - 33334924 ----GGC
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1591076 3 +  4147112 ----AAC
i caePb3.Scfld02_0      I 91 C 0
e caeJap4.Scaffold17545  221695 421 +   227596 I

a score=288022.000000
s ce10.chrX             3226720 432 + 17718866 AGAAACATATTGCGTGTTACGTCACAAACGTGTGCTTATTTCTTATGTCATCGGATCGAAAGGAACGCGGCAAAAGTGGTTTGTCGAGTGGGCTTTG----GGAAGGCTCAAGCTAGACAATGCGCAGACGCAACAA-AAAAAACGACGGCTTGAAGAAGGAAGCGAAGAAAAAA-------GAACGAGAATGGAATTGTGTATCTTGGCAAAGGGTAAGGCAACAGCGACTAAGACAAAAGCTGTCAGTTGGAATTTTCGGGGAGTGAGAGAGCCTCCGAACGGTGAGGGTGGTA-----GCG--------CGCGCG----AGTTTTCCT-TGGGAACCGTTCGGAGAGGGTGCAGAGCAGCAAA--------------GAG-CCATTGCCTGGTCATTGGAGCAgtatatgc-gt---------gtgtatgtgtgtgtgtgttttgtgtgtTTAGAGCAAATACCGTT----GCGATGCGCAGCTCAGC
s cb4.chrX              8293556 439 + 21540570 AGAAACATCTCACGTGTGACGTCACAAACGTACCA--ATTTCTTATGTCATTGGATCGAGAGGAACGCGGCAAAAGTGGTTTGTCGAGTGGGCTTTAGAGGGGGACGCCCAGTCAAGACAATGAGCAGACgagcaagaaaaaaacggcTGCTAGGA---AGcaccaaagaaaaaa----aataagctgGCAAGGTATTGTGTATCTTGGCAAAGGCCGAAACAACGACGACTAAGACAAAAGCTGTCAGTTGGAATTTCTCG--------------------TAGTGGCGGTAGCCCGCCGGTGCGCGCTGCTGCGCG----ACTTTTCCACCAGGAACAGTTCGGAGAGGGTGCAGATcagcagagagagagagagaaagag-ccaTAGCCTGATCATTTG------gtgtgttgt---------gtgtgtgtgtgtgtatg---tgtgtgttcAGAGCAAATATGGTTCCCGGCGATGCGCCACGAAGC
i cb4.chrX              C 0 I 2350
s caeRem4.Crem_Contig0   389078 430 -  4500979 agaaaaatatcacGTGTGACGTCAC-ATCGTACCCTTTTTTCTTATGTCATTGGATCGAGAGGAACGCGGCAAAAGTGGTTTGTCGAGTGGGCTTTA----GGGAGGCTCAAGCAAGACAATGCGCa---taggaaacaaaaaatgactgcTTGGAAGGAGCAGCGGTGAAAAAACGGGAGTGTGTTGGTAAGGCATTGTGTATCTTGGC-AGGATCGAAACAACGACGACTAAGACAAAAGCTGTCAGTTGGAATTTCTCGGG-----GAAAGCC-----ACCGTGAGGGTAGGTGGCCGCCG--------TGCGCG----ACTTTTCCACTAGGAACAGTTCGGAGAGGGTGCAGATCAGCAGAG-------------GAG-CCATAGCCTGGTCATTTGAGCAGTAtgtgttgt---------gtgtgtgtgtgtgtgtg---tgtgtgtacaGAGCAAATACGGTC----GCGATGCGCGACGAAGC
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   489804 409 - 33334924 AGAAACATATCACGTGTGACGTCAC-ACTATACCC---TTTCTTATTTCACTGGATCAAGAGGAACGCGGCAAAAGTGGTTTGTCGAGTGGGCTTTA----GGGAGGCTCAAGCGAGACAATGAGCagacgaga----aaaaaacggcTGATGGGAAGAAAAGcaagtgaaaaaa--acagtGTGATGGTAAGGCATTGTGTATCTTGGT-AGGATCGAAACAACGACGACTAAGACAAAAGCTGTCAgttggaatttttcgga-----gaaaGCC-----ACCGTGAAGGTGGCC----GCCG--------TGCGCG----ACTTTTCCTCTAGGAACAGTTCGAAGAGGGTGCAGATCAGCAGA--------------GAG-CCATAGCCTGGTCATTCGAGca---------gt---------atgtgtgtgtgt-tgtg---tgtATGTTCAGAGCAAATACCGTT----GCGATGCGCGACGAAGC
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1591079 401 +  4147112 AGAAACATCTCACGTGTGACGTCAC-ACTGTACCT---TTCTTCATGTCACTGGATCGAGAGGAACGCGGCAAAAGTGGTTTGTCGAGTGGGCTCTA----GGGAGGCTCAAGGAAGACAATGCGCATAcgagatgagaaaaaacgacTGCTTGGAAGAG--------GCAAAAA--ATGGTGTGATGGTAAGGCATTGTGTATCTTGGC-AGGACCGAAACAACGACGACTAAGACAAAAGCTGTCagttggaatttttcggg-----gaAAGCC-----ACCGGGAGGGTGACC-----------------GCGCG----ACTTTTCCTCTAGGAACAGTTCGAGGAGGACGCAGATCAGCAGA--------------GAGCCCATAGCCTGGTCATTCGAGCa---------gt---------atgtgtgtgtgt-tgtg---tgtatgttcagagcaaatACCGTT----GCGATGCGCGACGAAGC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17545  222116 391 +   227596 AAAAACCCATCACGTGTGATGTCAC-ACCGTAAtc---tttttttcgtcatttgaTCGTGAGGAATGC-GCAGAAGTGGTTCTTCGAGTGGGCTTT-----GGAAGGCTCAAGGGAGACGGTGCgcagagaaac----aaaaaaccatGGATGAGAAGGG--------GAAGAGG----AGT------GTATGGCATTGTGTATCTTAGC---AGTCGAAACAACGACAACTAAGACAAAAGCTGACAGTTGGAA--------------GACAATT-----TGTGTGGGAGCGACC----GCCA--------TGCGCGACGCACGCTACCTCTCGGAACGGTTCGGAGAGGGTGCAGATCAGCA----------------GAG-CCAGAGCCTGGTCATTTGAGCAGTATGCGACGTtgtggtgtggtgtgtgtgtgtgtgtg---tgtgtgtacaGAGCAAACACC-------GAAAAGCGAG-------
i caeJap4.Scaffold17545 I 421 C 0

a score=12154.000000
s ce10.chrX             3227152 141 + 17718866 GGTGAACGAT---------GCGGCAGGGCA-GAC-----------GATAGTCAAAATATTCTGA-TTTCTTA--CCGACAACACGCTGCCG-----C---------TTTCCGCT----GCGTGCAATGATATTTTATTCGCGGGTGGAGCT-------GACGAA-----ACTTTTGAAACTCGATATATGTGACA
s caeRem4.Crem_Contig0   389510 158 -  4500979 CTCGAACGATGCGGCTGT-GTGGCGGCATGAGAAAAGTAGAGAAGGATACGCAATATATTCTGA-TTTCTCG-CCTGACGACACGTTCCCG---------------TTCGCTCTTGAGACACGCAAAGATATTCGATTCTCGGGAGCTACTA------GACAAA---------TTGAAACTTTCTAAAGAT----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   490215 173 - 33334924 CTCAAACGATGCGACGGTAGCGGCGGCACG-GAAAAGTAGAGAAGGATACGCAATATATTCCGA-TTTCTTTTCCTGACAACACGTTCCTGATGTTCTG-------TTCACGCTTCGAACACGCAAAGATATTTGATTCTTTGGGAACGCTCTCCATTGACACC---------TGAATTCATTCAATATAT----
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1591482 115 +  4147112 CTCAAATGAT---------GCGGCGGCACG-GAAGAGTAGGAATGGATACGCAAtatattcagattttctttCTCCGACGACACGTTTCGGGTGTTC---------TTCACGTTTGAGACAAGCCATGATATCA-------------------------------------------------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17545  222507 157 +   227596 AGCGAATGAC---------TCGGCGGCACGAGAA-------GACGGACACGCAAAATAATCTGA-CTTCTCG--CCGACGACACGTTTCCGTTGTTCAGTCAGTAATTCCCGCAAGAATGTAAGAACGATATTACATTCGCAACCG------------GATGCCTTATGAAATTCAATACTTTCAACA-------
i caeJap4.Scaffold17545 C 0 N 0
e cb4.chrX              8293995 2350 + 21540570 I

a score=2189.000000
s ce10.chrX            3227293 10 + 17718866 AGAAATTTGA
s caeRem4.Crem_Contig0  389668  9 -  4500979 -GAAATTTAA
i caeRem4.Crem_Contig0 C 0 I 19
s caeSp111.Scaffold629  490388  9 - 33334924 -GAAATTTGA
i caeSp111.Scaffold629 C 0 I 8264
e caePb3.Scfld02_0     1591597  0 +  4147112 C
e cb4.chrX             8293995 2350 + 21540570 I

a score=-747.000000
s ce10.chrX            3227303 62 + 17718866 AACTAACGTTCGATCACAGAACTTGGAGTATTTTCAATGTCAAAATACAAATCTCATAATTT
s caePb3.Scfld02_0     1591597 39 +  4147112 AGCCATGATACGA---------ATGGACCGTTTc---ggttgaaattcaaa-----------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8293995 2350 + 21540570 I
e caeSp111.Scaffold629  490397 8264 - 33334924 I
e caeRem4.Crem_Contig0  389677 19 -  4500979 I

a score=-2738.000000
s ce10.chrX            3227365 55 + 17718866 -AA------ACTGAAGTGTGGTTTCGTAACTGAGAATATATTTTTTGG-------ATAGAGACGTTCAA
s caeRem4.Crem_Contig0  389696 44 -  4500979 -AA------ACTGAAG-------TTGGTAATTA------ATCATTTGACACTTCGATAATAACG-----
i caeRem4.Crem_Contig0 I 19 C 0
s caePb3.Scfld02_0     1591636 36 +  4147112 aaatgtactaTTGAGA-------ATGTTATTGA-----TATCATTTGA---------------------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8293995 2350 + 21540570 I
e caeSp111.Scaffold629  490397 8264 - 33334924 I

a score=-6335.000000
s ce10.chrX            3227420 43 + 17718866 AAAATACTTCTTCAG---TTATAGCGTTAAAAAAATAAGGTCAAAT
s cb4.chrX             8296345 43 + 21540570 ---aaaatttttaaatggtcGTTGTTTTAGAAAGTTATGACCAGtt
i cb4.chrX             I 2350 C 0
s caeRem4.Crem_Contig0  389740 29 -  4500979 ----AAAATGTAAAA-----GTTAATTCGAA--------GTCAACA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     1591672 29 +  4147112 ACACAAGTTCTTAAC---------TTTTGAC---TTCTGAT-----
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  490397 8264 - 33334924 I

a score=-13917.000000
s ce10.chrX            3227463 54 + 17718866 TGTATAATCCTG----GAAATGTTAAACATTTGAAAAT----TGAAACGTTTATTTACGAGA------
s cb4.chrX             8296388 48 + 21540570 -actttattttttgttggaaccacgataattaaaaata-----------tttattcagga--------
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  389769 26 -  4500979 -ACATTGCTCAT----------ACGGTTAT-----------------------TTCGGGA--------
i caeRem4.Crem_Contig0 C 0 I 2165
s caeSp111.Scaffold629  498661 61 - 33334924 TGtgtcaatttg-------aaaacaaatatctgaaatgaaataaaaatatttattaataTAAAAGAGA
i caeSp111.Scaffold629 I 8264 C 0
s caePb3.Scfld02_0     1591701 45 +  4147112 TTTATCACTTTG--------TCACAGTCAGTTGAACCA--------------Atccacaaaaaacag-
i caePb3.Scfld02_0     C 0 C 0

a score=-817.000000
s ce10.chrX            3227517  5 + 17718866 ----ATATC-
s cb4.chrX             8296438 10 + 21540570 aaaaataatc
i cb4.chrX             I 2 I 1
s caeSp111.Scaffold629  498722  5 - 33334924 ----CTATT-
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1591746  0 +  4147112 C
e caeRem4.Crem_Contig0  389795 2165 -  4500979 I

a score=569.000000
s ce10.chrX            3227522 10 + 17718866 ATTTAACAAA
s cb4.chrX             8296449 10 + 21540570 ctTCCAGGAA
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  391960 10 -  4500979 ATTTTAGAAG
i caeRem4.Crem_Contig0 I 2165 C 0
s caeSp111.Scaffold629  498727 10 - 33334924 ATTTCCCCAA
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1591746  2 +  4147112 --------aa
i caePb3.Scfld02_0     C 0 C 0

a score=-5079.000000
s ce10.chrX             3227532 5 + 17718866 -TGTCC
s cb4.chrX              8296459 3 + 21540570 -ATT--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   391970 4 -  4500979 -TTTC-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   498737 5 - 33334924 -ATTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1591748 4 +  4147112 -atcc-
i caePb3.Scfld02_0      C 0 I 21494
s caeJap4.Scaffold10737    7948 5 +    47500 TGTCG-
i caeJap4.Scaffold10737 N 0 C 0

a score=361233.000000
s ce10.chrX             3227537 659 + 17718866  
s cb4.chrX              8296463 665 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   391975 661 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   498742 663 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1613246 665 +  4147112  
i caePb3.Scfld02_0      I 21494 C 0
s caeJap4.Scaffold10737    7953 666 +    47500  
i caeJap4.Scaffold10737 C 0 I 38

a score=-10808.000000
s ce10.chrX             3228196 32 + 17718866 AATAATATAAACTACCTAACTTCTGAAATG---CT
s cb4.chrX              8297128 29 + 21540570 attcagaaaatggtATTAATGC---AGTGG---CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   392636 29 -  4500979 ATTTTAACGTGAAAATTAACTC---TTTCG---GT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   499405 28 - 33334924 AACAACTGTTTCTTGTTAA-------ATGGTCTAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1613911 25 +  4147112 AATATATTATGCATGTTGA-------TTAG---AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737    8619 38 +    47500 I

a score=5116.000000
s ce10.chrX             3228228 325 + 17718866  
s cb4.chrX              8297157 458 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   392665 308 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   499433 313 - 33334924  
i caeSp111.Scaffold629  C 0 I 22
s caePb3.Scfld02_0      1613936 294 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold10737    8657 241 +    47500  
i caeJap4.Scaffold10737 I 38 C 0

a score=-3955.000000
s ce10.chrX             3228553 20 + 17718866 TGTTCACTGATTTGAGCTTC-----
s cb4.chrX              8297615 17 + 21540570 tgtcccccga---aattttt-----
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   392973 19 -  4500979 TCAtcatcaa-ataattttc-----
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      1614232 19 +  4147112 tcattttttg-gtgaatttc-----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold10737    8898 20 +    47500 ----ttataa-ttgttttttgttgt
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   499746 22 - 33334924 I

a score=376899.000000
s ce10.chrX             3228573 566 + 17718866  
s cb4.chrX              8297667 568 + 21540570  
i cb4.chrX              I 35 I 32
s caeRem4.Crem_Contig0   392993 578 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 10
s caeSp111.Scaffold629   499768 565 - 33334924  
i caeSp111.Scaffold629  I 22 C 0
s caePb3.Scfld02_0      1614251 577 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737    8918 564 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-4949.000000
s ce10.chrX             3229139 15 + 17718866 TTAAT------ATTGAAAAAT
s caeRem4.Crem_Contig0   393581 10 -  4500979 -----------TCTATGTTTT
i caeRem4.Crem_Contig0  I 10 I 5
s caeSp111.Scaffold629   500333 15 - 33334924 attat------actATAATAT
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1614828 21 +  4147112 AGAGTGAATCAAATGTAATCT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold10737    9482 20 +    47500 GTAATGAATGCGCTTCAAAT-
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8298235 32 + 21540570 I

a score=230764.000000
s ce10.chrX             3229154 415 + 17718866 AAAAATC-----AATTCTGTAAT--------ACTCACGTCCGAGTGGATCCTTAACAGAAAGGGAACCAAATTCAGAGGAAGTGGTGACATAGATAAACGTTGTGTTGCTATCAACCGGCACAAACCATGGAAGAGATCCATCAGTGCACGAATAATTTGCGGGTCCGGTAGGATCTTGAAGAATTGATGCTCCATACAAGGATGGCAGATATGAATTCATGAGCT-GAA------AAACTAGATTTAAAAAGCTTCC-----CAGGGTTGC---TAACTTACAGAGACGATATTGGAGCTATCAGTAAACAAAATGTTTCCACTGGATCCATATCCAAGCCATGTCATATCTTGGACATTGTTGACACCCTCGAATGTTGGGCAGTTTGCAGACTTTGAGACAATGTAGTGAAGCTAAAAATTTTCAAAATT------GTTTCAATCT-
s cb4.chrX              8298267 411 + 21540570 aaaaaca-----aagTCCATGA---------ACTTACGTCCAAGTGGGTCCTTGACGGACAGAGATCCAAATTCAGAAGCAGTGGTAACATAGATAAATGTGGCGTTGGAATCAATTGGAACGAACCATGGGGTGGAACCATCGGAACAGGTGTAGTTGGCAGCTCCAGTTGGGTCTTGAAGGACTGAAGCTCCGTAGAGAGATGGAAGGTAGTTGTTGAGGAGCTGGAAATA---TGACATGATTGACATACGCACc-------agatcaattttttcttacaGTAACAAGGTTGGCCACATCAGTGAAAAGAATATTTCCACTTGATCCGTATCCTAGCCAAGTCATATCCTGGACATTGTTGACACCATCGAATGTTGGGCAGTTGGCAGTCTTGGACAGAACGTAGTGCAACTGAAAAACC--------------ATAATTATTC-
i cb4.chrX              I 32 I 6
s caeRem4.Crem_Contig0   393596 414 -  4500979 -aaaact-----gttttt--------------cttacGTCCAAGCGGATCTTTCACGGAAAGTGATCCAAACTCAGATGATACAGTGACGTAGATAAAAGTAGTGTTTGCATCAACTGGAACAAACCATGGAAGTGAGCCATCGGAGCAAGTGTAGTTAGTGGGTCCGGTTGGATCTTGAAGAACTGATGCTCCATACAATGATGGGAGATAGTTGTTGAGGAGCT-AAAATGcattcaaatatttgaaactc-cTTC-------GAGTGAA---TCTCTTACAGAAACAATGTTATTGGAGTCCGTGAAAAGTATGTTTCCACTTGATCCATATCCGAGCCAAGTCATGTCTCGGACATTGTTGACACCATCGAAGGTTGGACAGTTGGCTGATTGTGAGACAACGTAATGGAGCTGAAAGTac---taatttcacaaaaaagtattc-
i caeRem4.Crem_Contig0  I 5 I 5
s caeSp111.Scaffold629   500351 401 - 33334924 AAACATA--TAGAAGTTT--------------CTTACGTCCGAGTGGGTCCTTGATGGAGAGAGATCCGAACTCAGAAGATGTGGTAACATAAATGAATGTAGTGTTAGCATCGACTGGTACGAACCATGGAACTGATCCATCAGAGCAAGTGTAATTAGCACCTCCTGTTGGATCTTGAAGAACTGATGCTCCATACAGAGACGGCAAATAGTTGTTCAAAAGCT-GAATTC---TAGTAATTTTCATACAAATACT-TGTGTTTAAACA---------TACCGTGACAATGTTATCAGAGTCAGTGAAAAGAATGTTTCCACTTGATCCGTATCCAAGCCATGTCATGTCTTTGACATTGTTGACACCGTCAAATGTTGGGCAGTTAGCTGTCTTTGAAAGGATGTAATGCaactaaaa------------------atatgaatat-
i caeSp111.Scaffold629  I 3 I 5
s caePb3.Scfld02_0      1614852 410 +  4147112 TAAAATAGCTAAAA------------------CTTACGTCCAAGTGGGTCCTTGACGGAAAGGGATCCGAACTCAGCAGAAGTTGACACATAAATGAAAGTGGTGTTGGCATCAACTGGAACAAACCATGGAAGAGATCCATCAGAGCAAGTATAGTTGGCGGCGCCAGTTGGGTCTTGAAGGACAGATGCTCCATACAAGGATGGCAAATAAACATTGAGAAGCT-AAA---------CAAGTTCTATGCATATTCTATATGCGAAGCCAC--TATTCTTACAGAAACAAGGTTGTCGGAATCGGTGAAAAGGATGTTTCCGCTGGAACCATATCCAAGCCAAGTCATGTCTTTTACATTGTTAACTCCATCAAAAGTTGGGCAGTTAGCAGTCTTAGAGAGGATGTAAtgcaactgaaaaaca---aaaat------aaatgaattt-
i caePb3.Scfld02_0      I 3 I 14
s caeJap4.Scaffold10737    9502 366 +    47500 -----------AAAATTCGTAATAGAAATAAACATACGTCCACGTGGATCCTTGACAGAGAGCGATCCGTATTCAGATGAGGTGGTAACGTAGATGAAAGTAGTGTTGATATCAACTGGTACATACCACGGGATAGATGCATCAGAGCAAGAGTAGTTGGAGATTCCGGTTGGGTCTTGAAGCACCGAGGCTCCGTACAGAGATGGCAAGTACGCCTCAAGAAGGC-----------------------------------------------------------TGACAATTCCATTGCTGTATGTAAATAGAATATTTCCACTGGATCCGTATCCGAGCCATGTCATATCTCTGACATTGTTGACTTCATCGAATGTTGGACAATTCgaagtttttgaaataatGTAGTGCAACTAAAAAGAT--------------TGATGATTTTT
i caeJap4.Scaffold10737 C 0 C 0

a score=-5513.000000
s ce10.chrX             3229569 18 + 17718866 AGAAATTAAAGTAAGAAA
s cb4.chrX              8298684 12 + 21540570 ------CTCACTAACAGT
i cb4.chrX              I 6 I 2
s caeRem4.Crem_Contig0   394015  2 -  4500979 ----------------AT
i caeRem4.Crem_Contig0  I 5 I 2
s caeSp111.Scaffold629   500757 14 - 33334924 ----ATTAAAATATCAGT
i caeSp111.Scaffold629  I 5 I 5
s caeJap4.Scaffold10737    9868 17 +    47500 GGACAGTGTTGCGAAAA-
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1615262 14 +  4147112 I

a score=213817.000000
s ce10.chrX             3229587 324 + 17718866 CATACATGGGCTTCGGTGTTGAACAGCGAATTCATAGCTTCTCCGTATTTGTTGAGATCACTTGGGCCAGCAGCTGTAACTAGGAAAATCTCACTGTTTGGAATGGAAATCACATTATCGTGCTCCAGGAGATGTGCGAGAACTCTGAAAACGAGAGTTTGGTTTGAACATTCAGTCATTATGCTT---------------TTACCCTAAATATGGCATGCTGCAAGCTCCGTCAGTTGAGATTGCGGTTGATTGAGCTGTCAAGTCGGTAATCAAAGCATCGATAGTGGTGTAGTTGTACTTCTCGAATGTTCTTCCAGTGGCTGAATTA----TCTCTCAA
s cb4.chrX              8298698 325 + 21540570 CTTACATGTGCTTCGGTATTGAAAAGTGTGTTCATTGTCTCTAAATACTTGTTCATGTCGGATGGTCCAGCAGCGGTGACCAAGAAGATTTCGCTGTTTGGCGTGGCAATCACATCATCGTGCTCCAAGAGATGCGCAAGAACTCTGAAAACGCTGTTGTAAATTAAA-ACTGACTACTGTATATC---------------CTACCCAAGATATGGCAAGCTGCATGCACCATCGGTGGAAATGGCGTTGGATTGAACGGTGAGATCAGTGATGAGGTCATCGATGGTAGTGTAGTTGTACTTCTCAAATGTTCTTCCGGTGTC--TAGAATTGCATGGTTGA
i cb4.chrX              I 2 I 1
s caeRem4.Crem_Contig0   394019 327 -  4500979 CTTACATGAGCTTGAGTGTTGAACAGGGTGTCCATGGTTTCTCCATATTTGTTGAGGTCACTTGGTCCTGCCGCTGTGAACAAGAAGATTTCACTATTTGGCATGGCGATAACATTATCGTGTTCCAGAAGATGAGCCAGaacactaaaaatattttataagtTTGCG-ATTCTATAAAGCTTTTA---------------TTACCCAAGATATGGCAAGCTGCAAGTTCCATCAGTGGAAATAGCAGCGGATTGAGCAGTCAGATCAGTGATGAGATCATCAATGTTGGTGTAGTTGAAGTTCTCGAATGTTCTTCCAGTGGCTGTAAAAACGCAAGTATAA
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold629   500776 329 - 33334924 CTCACATGAGCTTCGGTGTTGAAAAGAGTATCCATTGTTTCTCCGTATTTATTGAGATCGCTTGGTCCAGCGGGAGTGACCAAGAAGATTTCACTGTTTGGCATAGCAATAACATCATCATGTTCGAGAAGATGAGCAAgaactctgaaaa----acagaa----gaa-atcgagttatttttcaatttcagagagAGATATTACCCCAGATATGGCATGCTGCAAGCACCATCAGTGGTAATTGCATTTGATTGGGCGGTCAGATCAGTGATCAAAGAATCAATGCTTGTGTAGTTGAAGTTCTCGAAGGTTCTTCCAGTGgctgaaaa-----ttgatcaa
i caeSp111.Scaffold629  I 5 I 31
s caePb3.Scfld02_0      1615276 328 +  4147112 CTTACATGAGCTTGAGTGTTGAAGAGAGTATCCATTGTTTCTCCGTACTTGTTGAGATCGCTTGGTCCAGCTGGAGTGATCAAGAAGATTTCACTGTTTGGCATAGCAATAACGTCATCGTGCTCCAAAAGATGAGCAagcactctgaaaa----attggaacataGA-ATTGAATCAATTGTTCA----------AGACCCTACCCAAGATATGGCATGCTACAAGCTCCATCAGTAGAAATAGCATTCGATTGTGCAGTGAGGTCAGTGATGAGGGCATCAATAGTTGTGTAGTTGAACTTCTCGAAAGTTCTTCCGGTGGCTGTAAAGAAGTGTTCtcaa
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold10737    9885 320 +    47500 CTTACGTGCGCCTCAGTGTTGAACAAGGTATCCATGGTGTTGACATAGTTGTCGAGATCGCTTGGTCCGGCAGCAGTTACCAAGAAGATTTCACTGTTTGGAATAGCAATAACATCATCGTGCTCCAAAAGATGGGCAAGAACTCTGAAAT----GTTATAAATCACAAAATCCTTATATAATTTT---------------TAACCCAAGGTATGGCAGGCTGCAAGATCCATCCGTCTGGACCTGGCTGGCTTTGCTAGAAAGGTCGGTAACAAGATCAGCAATATTCGCGTAATcgaacttttcgaaagttcTTCCAGTGTCTGCAATATTGAACTG----
i caeJap4.Scaffold10737 C 0 C 0

a score=-7981.000000
s ce10.chrX             3229911 25 + 17718866 ------TTTTAAAGACTAACGCAATTATCTC
s cb4.chrX              8299024 20 + 21540570 -----------GATGAAAACAACAAGAATTC
i cb4.chrX              I 1 I 5
s caeRem4.Crem_Contig0   394347 21 -  4500979 ----------TTGTATATACAGGCTGAATGC
i caeRem4.Crem_Contig0  I 1 I 2
s caePb3.Scfld02_0      1615604 25 +  4147112 ------taggaaaaaaagaaaacaaaaaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   10205 25 +    47500 AATTATTGTTTtacaaataaaacat------
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   501105 31 - 33334924 I

a score=2520617.000000
s ce10.chrX             3229936 3421 + 17718866  
s cb4.chrX              8299049 3363 + 21540570  
i cb4.chrX              I 5 I 37
s caeRem4.Crem_Contig0   394370 3416 -  4500979  
i caeRem4.Crem_Contig0  I 2 I 2
s caeSp111.Scaffold629   501136 3357 - 33334924  
i caeSp111.Scaffold629  I 31 C 0
s caePb3.Scfld02_0      1615629 3369 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   10230 3368 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-10899.000000
s ce10.chrX             3233357 43 + 17718866 CAACCATGAAGATTCTGTAAAACATTGAAAAACTAGTCGATAC------------------
s caeRem4.Crem_Contig0   397788 25 -  4500979 ------------------CAAATTTCCACAGTCTCATCTATTT------------------
i caeRem4.Crem_Contig0  I 2 I 9
s caeSp111.Scaffold629   504493 33 - 33334924 CAGCC----------CAGCTAGAATTTACACTTCAATTTATCT------------------
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1618998 31 +  4147112 CAGTT------------GTTGAcgcttgttttttgttcagttg------------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold10737   13598 39 +    47500 ----------------------CATTTAATCTttgtttattttgaatttccaGGAAATGAC
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8302412 37 + 21540570 I

a score=229993.000000
s ce10.chrX             3233400 519 + 17718866  
s cb4.chrX              8302449 536 + 21540570  
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   397822 537 -  4500979  
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold629   504530 524 - 33334924  
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1619033 528 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold10737   13637 782 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-6412.000000
s ce10.chrX             3233919 42 + 17718866 CCTGAAAAATAAAATATTTGATGACCAATTTAGGCTGGCTCA
s caeRem4.Crem_Contig0   398359 41 -  4500979 CCTG-CAATAAAGATTTTTATCGCCATAATAATGCCGGCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   505054 35 - 33334924 CCTG----TGTaaataattaata---aaatcATGGAGTCATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1619561 35 +  4147112 CCTA-----GAAAACGTTAAATGC--AAATCACGCATCTTCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   14419  8 +    47500 CCTG-----AAAG-----------------------------
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8302985  0 + 21540570 C

a score=-12438.000000
s ce10.chrX             3233961 101 + 17718866 AAAAAGTGTCCTTTTTAGAAGGTTGTCTTTGTGTTATCAACCATGTAGCACATCAATGGCAACATAGCGTTTTCTATTTAACAGCTCTAGTTACAGTATTC---
s caeSp111.Scaffold629   505089  14 - 33334924 TGT---------------------------------------------------------------------------------------ATACAAAATAA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1619596  14 +  4147112 AGA---------------------------------------------------------------------------------------TTTTGAACTCT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   14427  38 +    47500 ---------------------------TTTTTACTACCATCGATTGAtcgg---------------------------------------tttcaatttttttt
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8302985   0 + 21540570 C
e caeRem4.Crem_Contig0   398400   0 -  4500979 C

a score=910.000000
s ce10.chrX             3234062 1 + 17718866 A
s caeRem4.Crem_Contig0   398400 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   505103 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1619610 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   14465 1 +    47500 a
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8302985 0 + 21540570 C

a score=830117.000000
s ce10.chrX             3234063 1566 + 17718866  
s cb4.chrX              8302985 1511 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   398401 1491 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   505104 1487 - 33334924  
i caeSp111.Scaffold629  C 0 I 11
s caePb3.Scfld02_0      1619611 1547 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   14466 1453 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-4452.000000
s ce10.chrX             3235629 26 + 17718866 ATTC-------CACGCCCTTTGCATTC----------TAATTG
s cb4.chrX              8304496 16 + 21540570 -----------------TTTTCAATCA----------CAGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   399892 22 -  4500979 -----------TACAGCTCATTAAATA----------TAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1621158 42 +  4147112 -CTCCGCGGCACACACCTTTCCAGCCAATCAAAAGTGCAACTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   15919 25 +    47500 -TTC-------CATTGCTCTTTCATTT----------TACCTG
i caeJap4.Scaffold10737 C 0 T 8060
e caeSp111.Scaffold629   506591 11 - 33334924 I

a score=-5607.000000
s ce10.chrX             3235655 19 + 17718866 AGTA-----GTAGCAGAATAATG-T
s cb4.chrX              8304512 23 + 21540570 GTGGAGAAGGTTGCCAAAAAGTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   399914 19 -  4500979 TTTTA----ATAGTGAAAAAGTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1621200 17 +  4147112 TGAGT----CTTGCGTAA---TGC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   15944 8060 +    47500 T
e caeSp111.Scaffold629   506591 11 - 33334924 I

a score=-34706.000000
s ce10.chrX             3235674 116 + 17718866 ------CACAGAATACGAT-------------TTTGTATCATCAAATTATTATCAAGCACTTT-CTGATGAT--TTCGACTTGA----------------------AGTTCAACCACTAGTAAAGTTTATTGAATTGCCATCACATTTCACTTTTGTATT
s cb4.chrX              8304535  69 + 21540570 CA---TTAGAAATGCCGCG--------------------------CTTTTTATCATATAAGAT-CT--------TTTTAATTGCCTCTT----------------------------------------------TGAGACCGTTTTCGTATT-------
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   399933 141 -  4500979 CATTGTTAAACGTGGCGTGGCATTATCAAACACTGACAGTAC-TATCTTCTGGTTTATAACGT-TT--------TTCGACTTGATTACTGTACtgatttgatctgaaatttga--attaatgTTGATTATTCAAGTGACTTCAGCTTTGGCTT-------
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold629   506602  71 - 33334924 ---------------------------------------CACCTAATATATTTAATCAAAAGTGCA--------TTCGAAGTGACTGAA------------------------------------------AAAGAGTGTGCACGTTTTTCTACTGAATT
i caeSp111.Scaffold629  I 11 C 0
s caePb3.Scfld02_0      1621217  89 +  4147112 ---TATTAAAAACTGTGAG--------------TGATATTGTATCATTTCTTTCCTTGAATGT-CATATTACTTTTTACAGTAACT-----------------------------------------------------TTCTCCTTTTGTTTCTAAATG
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold10737   15944 8060 +    47500 T

a score=-2185.000000
s ce10.chrX             3235790 16 + 17718866 --ATATTTTTTCTCTC-GT
s caeRem4.Crem_Contig0   400091 15 -  4500979 --ACATTTTATTCGTCG--
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold629   506673 15 - 33334924 -AATATTTGttctgaa---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1621317 16 +  4147112 aaatcttccttTTGGG---
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold10737   15944 8060 +    47500 T
e cb4.chrX              8304604 33 + 21540570 I

a score=-5590.000000
s ce10.chrX             3235806 34 + 17718866 AATTT-TGATTTTTCGGTCCAACACAT---AAATTGTT
s cb4.chrX              8304637 35 + 21540570 aattg-tga--tttgtGTTTGTCTTGATGGTAATAAAT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   400106 31 -  4500979 -ATTT-TGA--TGtaagtaaatttgaa---aaaataat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   506688 31 - 33334924 tatt--tga--aataggttaattttga---aaagcaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1621333 33 +  4147112 TGTTGCCGG--AACAAATTTCAGGTAT---TAACTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   15944 8060 +    47500 T

a score=151183.000000
s ce10.chrX             3235840 350 + 17718866 AAATAATGATAA--GTTTATTAA----------AATTCA----AATTAT--TTCAG--TGATTTCCG-GGTCGACTGCCTTAGTTGTTGATACAGTAGACACCTCCATTGGCGCTGAAA-----ATAAGA----ACATTTCACTTAATGAACACACTTATATA----------TCTTACTTGGCATTGAGGATAAGTTGCTGAATGGTCTTAATTTGGTTATTCAAACTAGCAAAATCTGGAGCTGTAAACGAGCAAGCACTTCCTCCGGAAATAGTTTGCAACTTGTTGTTATCAGTCGCGCCACCATAACCAATAGTGATGATTCCGTATTGCTTCTGCGCGAGAATTGTCTGAGCTGCCGGAGTTGGATCGGTGTCGAAGCTAAAAA----
s cb4.chrX              8304672 353 + 21540570 TCATGA--------ATTCATTAA-------AGCAATTAA----AGTCtttattcaatgaaaaaacaC---TTATTCCATTCAGTTGTTTGTGCAGTACACTCCTCCATTGGtgctgaaattgtgaaaaaagttagaatttcACTT--TCTCAATAAAT-TG------------TCTTACTTGGCATTGATGATCAATTGTTGGATCGTTCTGATCTGGTTGTTCAATCCAGCGAAATCGTTAGCAGTGAATGAGCAAGCAGCACCACCGGAGACAGCTTGCAGTTTGGTATTATCAACTGCATTTCCCATACCAACGGTGATGATACCGTATTGTTTCTGAGCAATGATGGATTTGGCTGTTGCTGTGGGGTCCAcgtcaaatctgaaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   400137 350 -  4500979 taatga--------atttattga--aaaggaGAAGTTAACAGGAAtcatcttttaa--aaaaagc--------ttCCATTCAGTTGCTTTTGCAGTAATTTCCTCCGTTGGTGCTGAAA-------------CAATATCTCATTTAATctcagaaaat-aatt---attttgttcTTACTTGGCGTTAATAATAAGCTGTTGGattgttttgatttgattGTTTAAACTAGCAAAATCAGGAGCAGTGAATGAGCAAGCAGCTCCTCCGGATATAGTCTGCAACTTATTGTTATCGAAACCAGTTCCGTATCCTATAGTGATAATTCCGTATTGCTGTTGGGCAATGATAGTTTGAGCAGTTGGAGTTGGATCAGtgtagaatctg---a----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   506719 355 - 33334924 aaataatgaaaaatatttattaatcagacaa-------a----aaccat--ttcaa--aacaattat-cAGCAAGTCTCTCAGTTGTTGGTACAGTAGTTTCCTCCGTTCatgctgaaa-----ataaaaatcaa---tcaGGTATATTTTAGGAGTG-TATG----------TCTTACTTGGCATTGACAACCAACTGTTGGATTGTTCTGATTTGATTGTTCAAACTGGCAAAATCAGGAGCAGTGAAAGAGCAAGCGGCTCCTCCAGAAACTGCTTGCAACTTGCTGTTATCGAAACCTGTTCCAAATCCGATAGTAATGATTCCGTATTGCTTCTGAGCCAGAATGGTTTGAGCCGTTGAAACTGGGTCAGAGTTGAATCTGGAAA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1621366 356 +  4147112 AAACAActtaaaatatttattatttgaaaaaacagaaga----aattaT--TTCCA--AAC---------GCAACCCATTTAGTTGCCGGTACAGTAGACTCCTCCgtttgagctggaa-----aaaaca---------taactgtttttgaaaattt-tatga--aaaataatcttACTTGGCATTGATGATAAGTTGTTGGATGGTTCTGATTTGGTTGTTCAATCCAGCAAAATCAGTAGCAGTGAATGAACATGCGGCACCACCAGAAATAGACTGCAACTTGGCATTATCGAAACCAGCTCCATACCCAATGGTGATAATTCCGTATTGCTTTTGAGCCAAGATTGTTTGAGCAGATGGTGTTGGGTCGGTGTAgaagctgaaaa----
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold10737    7884 377 +    47500 AAATAATAACataattttattga-aattgggatagtaaa----aatgaa--attca--acTGGGCATTGAATGTGTCGTTCAGTTGTTGGTACAGTAGACTCCTCCGTTGCTGCTGTAA-----ATGTTT--CAgaggttgttttttttttcaaaatt-tctaatttcaGTTTTCTCACTTTGCGTTAGAAATAAGTTGACGGATTGGGCTGATAGCATTGTTCAAACCAGCAAAGTCAGAAGCGGCAAAAGAACAAGAGCTTCCACCGGAAATGGCTTGCAGTTTGTTACTATCGGCATCGTTTCCATATCCGATAGTAATGATTCCGTACTGCTTGCTAGAAATGATACGCTGAGCAGCCTGTGTTGGGTCGGTGTCGAACCTGAATGCcga
i caeJap4.Scaffold10737 T 8060 C 0

a score=-6335.000000
s ce10.chrX             3236190 30 + 17718866 -----ATATTAATTTTATCTGGCAATCTTTTGAAC-
s cb4.chrX              8305025 28 + 21540570 -----aaaacag--gtgattactaaaaatttgaat-
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   400487 28 -  4500979 -----aaatcaa--ttgtttgttggaaattgaaaG-
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   507074 25 - 33334924 --------TCAA--TTCAGCAATCATGTTTATGAT-
i caeSp111.Scaffold629  C 0 I 9
s caeJap4.Scaffold10737    8261 34 +    47500 aattcaattcaa--ttcaatagCTCATTTGCGGGCA
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1621722 34 +  4147112 I

a score=199304.000000
s ce10.chrX             3236220 329 + 17718866 ACTTACGCAGTAGTTGTAGTAAGGTAGATCAACACATGGTTGCTAATGCCACTACGGTAACCATTGTTCGCCGCCATGAAATCGGGAGAAGACACAATTTGAAGAGTGTAGTTAAGAATTTGCCCGGCGTCTTCAAAGTCAGTGTAGCCACCGCTGAGTTGGGCCAAGTTAGAGTTCAACATTGCTTGAGAGGAGAGGGAGTTCAGATTGGCAGCAGGAGGAATTGGGTTTGTGATATCACCTCCGACGACAATTAATCCAACACGAGCTCCACTCTGGCCAACATTGAACGAAACCATGAATGTTTGAACAAATTTGGTGAGCTGAAA
s cb4.chrX              8305058 328 + 21540570 -CTTACCCAGTGGTAGCTGTGAGGTAGAAAAGAACATGATTACTGATGTCGCTACGGTATCCTGCATTCGTGGCCATATAATCAGTTGAACTGACGACTTGGAGGTTGGAGTTGAGGAGTTGTCCAGCGTGATCAAAATCTGCGTAGTTGTCTTTGAGAAGCGCCAAGTTAGAATTGAGATTAGCTTGAGAAGTAATGGAGTTTAGATTTGCAACTGGTGGTGGTTGGTCATCCAAATCCGGAGCAACAATTATGATTCCAACACGAGCTCGGTTCAAGCTAATATTGAAGGAAACCATGAAGGTTTGAATGAATTTCGTGAactggaa
i cb4.chrX              I 5 I 28
s caeRem4.Crem_Contig0   400520 323 -  4500979 ACTAACGCCGTGTTGGTAGTAATGTATACGAGAACGTGGTTGTCGATGTTACTACGATATCCAGCA------GACTTGTAGTCATTGGAAGTTACAATTTGGAGATTGTACGTGAGTACTTGACCAGCATGATCGAAATCGGCGTAGTTTTCTTTGAGAAGATTCAAGTTGGAGATAAGCGACGCTTGCGAAGTGATCGAGTTAAATTGGGCAGCCGGTGGAGGCTGGTCATCGAGATCAGGTGCAACAACGATTAATCCAACACGAGCACCGTTCAACCCAACGTTGAAAGAAACCATGAATGTTTGAACAAACTTggttaactgaaa
i caeRem4.Crem_Contig0  I 5 I 3
s caeSp111.Scaffold629   507108 329 - 33334924 ACTCACGACGTGGTGGTAGTAATATAAATAAGAACATGGTTGTTAATGTTACTACGGTATCCAGCAGAAGCTGACATGTAATCAGCAGATGTGACCACTTGAAGATTTTCAGTTAGAAGTTGTCCGGCATGGTCGAAGTCAGCATAGTTGTCCTTGAGAAGATTCAAATTGGAAATCAATGAAGCTTGAGAAGTGATAGAGTTCAACTGAGCAGCTGGTGGAGGCTGATCATCAAGATCTGGAGCCACAACAATCAAACCAACACGTGCATTGTTTACTCCAACGTTGAAAGAAACCATAAATGTTTGAACAAATTTGGTGAgctaaaa
i caeSp111.Scaffold629  I 9 C 0
s caePb3.Scfld02_0      1621756 329 +  4147112 AGTTACTTGGTAGTTGTGGtgaggtagatcaaaacgtGATTGTTGATGTTGCTACGGTATCCCGCAGAGGCTTGCATGAAATCGGTTGAAGTAACAACTTGAAGATTATAGGTGAGTACTTGTCCAGCATGATCGAAATCTGCATAGTTGTCCTTGAGAAGAGCCAAGTAAGAGTTCAAGATAGTTTGAGAAGTTATGGTAATCAATTGAGCAGCTGGTGGAGCTTGGTCATCAAGATCTGGAGCAACAACGACTAATCCGACACGAGCGCCAGCCAATCCAACGTTGAAGGAGACCATGAAGGTTTGAATGAACTTCGTGAACTAGAA
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold10737    8295 320 +    47500 ACTAACGATGTTGTTGTGGTTAGGTAGATAAGCAGATGGTTTGAAATATCCTGACGGTATCCGCTATTG------ATATAGTCATCCGAAGTAGCGATCTGAAGGGCGGTGTTAAGAACTTGTCCTGAATGCCCGAAATCAGCGTA---TTGTTTGAGGTAGGACAATTCTTTGTTCAAAACAGTTTGAGAACTAATGGAGGTGAGTTGGTCAGCTGCCGGAGATTGATCGGCGTTATCTGCAGCCACCACAATCATTCCAACGCGTGCCTTATCCTGGCCAACGCTAAAGGAAACCATCAATGTTTGAACGAACTTTGTgaactaaaa
i caeJap4.Scaffold10737 C 0 I 4

a score=-1841.000000
s ce10.chrX             3236549 18 + 17718866 TTCATATGATGGAAACAT
s caeRem4.Crem_Contig0   400846 18 -  4500979 ttcagaaaatgaactTAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   507437 11 - 33334924 -------aaagagataaa
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1622085  9 +  4147112 -------Atggaa--caa
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold10737    8619 18 +    47500 ttaagatgTTGAGCATAG
i caeJap4.Scaffold10737 I 4 C 0
e cb4.chrX              8305386 28 + 21540570 I

a score=-2032.000000
s ce10.chrX             3236567 8 + 17718866 AAAGGGCA---
s caeRem4.Crem_Contig0   400864 8 -  4500979 GACTGACT---
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   507449 8 - 33334924 aattgaat---
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold10737    8637 8 +    47500 ---TAATCTCG
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1622094 29 +  4147112 I
e cb4.chrX              8305386 28 + 21540570 I

a score=-2732.000000
s ce10.chrX             3236575  9 + 17718866 -----TATAATGTA
s cb4.chrX              8305414  9 + 21540570 -----taaaatata
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   400876  9 -  4500979 -----TGAGTTCAT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   507457  9 - 33334924 -----taaGAGATA
i caeSp111.Scaffold629  C 0 I 4
s caeJap4.Scaffold10737    8645 13 +    47500 TCATTTTAATTCC-
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1622094 29 +  4147112 I

a score=159663.000000
s ce10.chrX             3236584 493 + 17718866  
s cb4.chrX              8305423 422 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   400885 458 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   507470 508 - 33334924  
i caeSp111.Scaffold629  I 4 I 14
s caePb3.Scfld02_0      1622123 456 +  4147112  
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold10737    8658 441 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-10413.000000
s ce10.chrX             3237077 28 + 17718866 CTTCTGAGTTTATTCTCTTGTGAAGGGA
s cb4.chrX              8305845  7 + 21540570 ----------------ccAATTA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   401343  7 -  4500979 ----------------CTCAAAA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1622579 21 +  4147112 -tttatatttttcaggttcagG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737    9099 18 +    47500 --TTCATCTGTTTAATATCA--------
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   507978 14 - 33334924 I

a score=654923.000000
s ce10.chrX             3237105 1136 + 17718866  
s cb4.chrX              8305852 1136 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   401350 1131 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   507992 1126 - 33334924  
i caeSp111.Scaffold629  I 14 I 17
s caePb3.Scfld02_0      1622600 1135 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold10737    9117 1079 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-8382.000000
s ce10.chrX             3238241 24 + 17718866 TTACAACTGATATGTATCAGAGGA----------------
s cb4.chrX              8306988  7 + 21540570 ------------ttt-----ggaa----------------
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   402481  4 -  4500979 --------------------GGGA----------------
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0      1623736 15 +  4147112 TTATAAC----ATGT-----AGGA----------------
i caePb3.Scfld02_0      I 1 I 5
s caeJap4.Scaffold10737   10196 22 +    47500 ------------------ATTGAACTGAATTATTGTTTta
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   509118 17 - 33334924 I

a score=2300841.000000
s ce10.chrX             3238265 3075 + 17718866  
s cb4.chrX              8307008 3027 + 21540570  
i cb4.chrX              I 13 I 27
s caeRem4.Crem_Contig0   402493 3034 -  4500979  
i caeRem4.Crem_Contig0  I 8 I 3
s caeSp111.Scaffold629   509135 3026 - 33334924  
i caeSp111.Scaffold629  I 17 I 2
s caePb3.Scfld02_0      1623756 3032 +  4147112  
i caePb3.Scfld02_0      I 5 I 2
s caeJap4.Scaffold10737   10218 3024 +    47500  
i caeJap4.Scaffold10737 C 0 C 0

a score=-10615.000000
s ce10.chrX             3241340 22 + 17718866 ATTG--------ATATGG-GAGATATAAA-GT-------
s caeRem4.Crem_Contig0   405530 20 -  4500979 AGt---------tttcga-tttaaaaaaat---------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   512163 21 - 33334924 ATTA--------TTACATGAACAAAGAAA----------
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1626790 28 +  4147112 ATTACAAATCTCTTTCGT-AACATTCAAA----------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold10737   13242 27 +    47500 AGTA--------ATAAAC-GGGAGGAAAC---TTTTAGT
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8310035 27 + 21540570 I

a score=208635.000000
s ce10.chrX             3241362 348 + 17718866 GAAGTGACTTACGGTCGAAATAGTGCTTCTGTCGCTGAAATAGAAAGTGTTACCACTTGAACGAGCAGCCATGTCCACCATATCTCTATATGCAGAGTTATCTGGAGATGAGTTACATCCATCGGCTGGAGATGGTTGAACGTAAATGAAGTAGATCTGAAAT---------TTAAATA---------GAGTCAACATTATTTGCTTTCATGTTATTTACCGGTGCTCTCCAATAAGATTCCAGATGGAACACAGTTTCCTTCTCAGCACTATCATTTGGAGTGGCGTCCGTAATCACATAGATCGGGGATTTGTTTGTTGGATAGAGAGAAAGTGCAGATCTGT-AATGAATTAGCATTTTTAAAC-------
s cb4.chrX              8310062 344 + 21540570 CAAGTGACTCACTGTAGATACAGCGGTTTGGTTTTCGAAATAGAATGTGTTACCACTAGTGCGAGCAGCCATATCAACCATATCTCTGTATGCAGAGTTGTCTGGAGACGTGTTGCATCCATCAGCTGGTCCTGGTTTGACGTAGATAAAATAGatctgggaa--------aaaaaata--tttgtaagaatttataatttttacg--------ACTAACCGGAGCTCTCCAGTAAGATTCCAAATGGAAGACTGTTTCCTTTTCAGCGCTGTCGTTTGGATTGGCGTCGGTGATAACATAGATCGGAGACTTGTTGGTTGGATATTGAGAGAGGGCAGCACTAA-AAGAAAT----ATATTTAGAT-------
i cb4.chrX              I 27 I 19
s caeRem4.Crem_Contig0   405550 342 -  4500979 taatttgcaTACGGGAGAGATGTTTGTTCTGTTGCTGAAGTAGAAAGTGTTACCACCGGTACGAGAAGCAATATCAACCATATCTCTGTAAGCACTGCTATCTGGAGACGTGTTACAACCGTCAGCTGGTCCTGGTTGGACATAGATAAAGTACACCTGAAAAGCGACATCAAGAAATA-----GGAAG-----ATGGTTGTAGAA--------ACGTACCGGAGCTCTCCAGTAGGACTCCAGGTGGAAAACGGTTTCTTTTTCTGCGTTGTCATTCGGATTGGCATCAGTGATCACATAGATTGGAGACTTGTTGGTTGGATATAAAGAAAGAGCAGAGCTGA-AAGAG------ACATTCAGAT-------
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   512184 340 - 33334924 ---GCTGCTCACAGTTGAAATAGTAGATCTATCATTGAAATAGAATGTGTTACCACCGGAGCGAGCAGCCACGTCGGTCATATCTCTGTATCCAGAGTTATCTGGAGACGTGTTGCAGCCATCACCGGGAGCTGGTTGAACGTAAATGAAGTAAAGCTGC--------------AATTA-ATTTCTGTGAACCAACAAGAATGAAA----CGATACTTACTGGCGCTCTCCAGTATGATTCAAGATGGAACACTGTTTCTTTCTCGGAACTGTCATTTGGATTGGCATCAGTGATGATGTAGACTGGAGATTTGTTGGTTGGGTAGAGGGAAAGAGCAGAACTGG-AATATAA----CTATGGAAAT-------
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_0      1626818 338 +  4147112 -------CTCACGCTGTTGATGTTAGTTCTGTTGCTGAAGTAGAAGGTGTTACCACTAGAGCGAGCAGCCATATCCATCATATCTCTGTATCCGGCGTTGTCTGGGGATGTGTTGCAACCATCAGCTGGAGCAGGTTGAACATAGACAAAGTAAAGCTGCATG--------AAGAATTATATTcatagaaaatataaaatatga----------ACTCACTGGGGCTCTCCAGTAAGATTCCAAAtggaaaactgtttctttttcaatgctGTCATTTGGATTGGCATCAGTGATAATGTAGACTGGAGACTTATTGGTTGGGTATTGTGAGAGAGCAGCACTGGAAATACAT----ACATACAAAC-------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold10737   13269 345 +    47500 -AAGCAACTCACTGTAGTGACAGCTGTTCTATCAGTGAAATAGAAAGTGTTTCCACTGGTGCGAATAGCCATATCAACCATATCTCTGTAGGCAGAGCTGTCTGGCGATGGATTGCAGTTGTCAGCTGGTGGTGGAGTCATGTAAAAGAAGTAGATCtggaac----------aaaata------aaaaagacaataaataaaaag--taagTAAGTTACTGGAGCTCTCCAGTATGACTCGAGATGGAAAACGGTCTCCTTCTCGGCACTGTCGTTCGGGTTGGCATCAGTGAAAACGTAAATTGGAGACTTGTTGTTTGGGTACTGGGACAACGCAGCGCTAT-AA---------GCATTTAATCTttgttt
i caeJap4.Scaffold10737 C 0 C 0

a score=-2684.000000
s ce10.chrX             3241710 17 + 17718866 ATTATTACATACCAGTG
s caeRem4.Crem_Contig0   405901 11 -  4500979 ------ACATGTCAAGT
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold629   512536  6 - 33334924 -----------ATAATT
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0      1627163  6 +  4147112 -----------ACAATC
i caePb3.Scfld02_0      I 7 I 8
s caeJap4.Scaffold10737   13614 17 +    47500 attttgaatttccaGGA
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8310406 19 + 21540570 I

a score=103106.000000
s ce10.chrX             3241727 149 + 17718866 ---AACTTACGCAACAGCAGACATGACAACATCATCACATCCTCCTTCGCTTGGAGCGGAATGGATAGCTTTTGTAAGATCGACCATTGCAGCGTCCCATGAATCATATTGTCTGTTCACCAAGAGCTCTGAAA--TAATACACTTTCATGTCA
s cb4.chrX              8310425 150 + 21540570 ---AACTTACGCAACAGATGAGAATACAACATCATCGCATCCACCATCAGTTGGAGCCGAGTGAATTGCTTTAGTAAGATCAACCATGGCTTTATCCCATGAGTCATATCTCTCGCTGAGAAGGAGTtctgtaaaa-attgaattgtgaTATCA
i cb4.chrX              I 19 I 18
s caeRem4.Crem_Contig0   405912 151 -  4500979 ---GACTCACGCAACAGCTGAGAAAACGACATCATCACATCCTCCATCTGTAGGAGCAGAATGGATAGCTTTGAGGAGATCAACCTTTGCACCATCCCATGAGTCATATCTTTTGTTGAGCAGTAGTTCTGAAAAGTGTTGAGTTTTGACACTG
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold629   512542 150 - 33334924 ----ACTTACGCAACAGCAGAGAACACAACATCATCACAACCTCCATCCGATGGAACCGAATGGATGGCCTTAGTGAGATCAACCATAGCCGCATCCCACGAACTATATCTCTTATTGACCAGAAGCTCTGAAAAGTGAAAGCTTTTGACACTG
i caeSp111.Scaffold629  C 0 I 19
s caePb3.Scfld02_0      1627177 150 +  4147112 ---AACTCACGCGACAGAAGAGAACACGACGTCATCACAACCGCCATCTGATGGGGCAGAATGAATAGCTTTGGTAAGATCAACCATAGCAGCCCCCCATGAGTCATATCTTTTGTTGACCAGGAGTTCTGCAAA-TTACAGGATTTAACACCA
i caePb3.Scfld02_0      I 8 I 12
s caeJap4.Scaffold10737   13631 150 +    47500 AATGACTCACGCGATAGCAGAAAACACAGAGTCAGTGCAACCACCATCTGATGGGGCCGAGTGAATGGCCTTCGTCATATCGACCATAGCCGCATCCCACGAATCATATCTTTTGTTGCTCAAGAGTTCTGAAAA----TGCACTTATATTTTA
i caeJap4.Scaffold10737 C 0 I 151

a score=-15523.000000
s ce10.chrX             3241876  8 + 17718866 A----------ATA---TGT------------------T-
s cb4.chrX              8310593 22 + 21540570 A---GGAAATCATA-AGTGT-------------CAATGT-
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   406083 35 -  4500979 A---TGGAATTATA-GGTGTAACCCTCTCATAATACTGT-
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold629   512711 36 - 33334924 a---gaaaactatacGATATAACCCGCTTAAATTTCTAT-
i caeSp111.Scaffold629  I 19 C 0
s caePb3.Scfld02_0      1627339 39 +  4147112 ataagaaaaaagtaaggTATGACATGGGTTAACATTTGT-
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold10737   13932  8 +    47500 --------------------------------aatttgtt
i caeJap4.Scaffold10737 I 151 I 115

a score=145436.000000
s ce10.chrX             3241884 217 + 17718866 --------------------------------TTAGATCAAAACTCACTTCCGTTATCAAAAAGAACAACAATGAACTTTGATAGATATCCAGGTTCACTAGCGAGAAGATCAACAATACTTTGAACAGACTCAGTTGCTTGTTCAATAACTGCAGAGAGCTGGCTTCTTGATCGGATGACAAGGGTGAGAGTTGGGTTTTCAGCGTTGAAGTCAAAGCCTGACATGTCGGTACACAAGACTGCAAA--GT--
s cb4.chrX              8310615 215 + 21540570 --------------------------------TTGCGTTTCTACTAACTTCCGTTATCGAAAAGAACGACGATGTAATTGGTGAGGTAACCAGGTTCGGAGGCCAATAGGTCCACAATCTCTTTAACAGAGTTGGTGGCTTGCTCAATGACAGCTGAGAGTTGAGTTCTGGAACGGATGACAAGGGTGAGCGTCGGATTTTCGGCGTTGAAATCGAATCCAGAAGTTTCGGTACAGACGACTGCAAT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   406118 215 -  4500979 --------------------------------TTGCTTTCACACTTACTGCCGTTATCAAAAAGAACAACGATGAAATTGGAGAGGTAACCAGGTTCGGAAGCCAGTTCTTGAACAATTTCATCGGTTGCATTCGTAACTTGTTCAATGACATCCGAAAGTTGGTATCTCGAACGAATGACAAAAGTGAGTGTTGGGTTCTCGGCATTGAAGTCAAATCCAGATGTGTCGGTACAGATAACTAAACT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   512747 215 - 33334924 --------------------------------TTGTATAAACACTCACTGCCGTTATCGAACAGAACAACGATGAAATTGGTAAGGTAGCCAGGCTCGGAACTGAGCAGATCAACAATATCAGTAACAGCTTGAGTAGCATTCTCGATGACAGCAGAAAGTTGAGTTCTTGAACGGATGACAAGAGTAAGAGTCGGGTTTTCCgcattgaaatcaaatccAGAGGTGTCAGTACAGATAACTAAAAC------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1627378 217 +  4147112 --------------------------------TTGCAATACGACTCACTTCCGTTATCAAAGAGAACGACAATGAAGTTGGTGAGGTATCCTGGTTCAGAAGCCAACAAATCAACAATGCTAGTGACAGCATCAGTAGCTTGTTCGATGACAGCTGAGAGTTGAGTTCTCGAACGAATGACAAGAGTGATGGTTGGGTTCTCAGCATTGAAGTCGAATCCAGAAGTGTCGGTACAAACAACTGGAAAGC----
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold10737   14055 249 +    47500 ttgaattaaaatgggTGTAACCGTTGGCATATTTGCTTGTGTACTCACTGTTGTTATCAAAGAGGACGATGATAAAACTGGTCAAATAATCGGGTTCGGTGGCAAGAGTTTGAGTCATTTCAGTAACGGCACTTGCAACTTGTTCAATGACTCCGGAAAGTTCGGAACGAGAACGGATGACAAGGGTAAGAGTTGGGTGCTCGGCATCGAAGTCGAATCCAGACGTGTCAGTACAAACAACTAAATG----Aa
i caeJap4.Scaffold10737 I 115 C 0

a score=-12406.000000
s ce10.chrX             3242101 31 + 17718866 TATTATGTTTTAAC--------------AGATAATTTTTACTAGT
s cb4.chrX              8310830 23 + 21540570 TTTTGAGTT---------------------ACAAGCTTT-TCTCT
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   406333 33 -  4500979 TATCGAAATGATAACAC-----------AAACACGTTTT-TCTGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   512962 35 - 33334924 -AGTGAGAGTTAAACTC--------TGAAACCACATCAT-CTAAT
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold10737   14304 38 +    47500 -atttatgtatgtacatatgtcGCCTAAGTGTAAAGTGT------
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1627595 36 +  4147112 I

a score=155338.000000
s ce10.chrX             3242132 311 + 17718866 GCATACTATTCTGGCAATGGAAGCCACTGAATCCTTCTGGGCATTGACAACGGTCACTGGTTGGAGTCGGCAAGAAACCTTAATAGttat--tataaaaaatatat-------aatttCAAGGATGAATT------GTACCTCCGTTAGCACAGAGCATTTGCGAGCAAGTACTTCCAGAGTAAAGTCCAAAGCAATAACAATATGCAACTCCATTAGAGTCAGTAAGCAACTGCCCTCCGTTTTGACAAGAAGTTATCGGTGCTGCAGGTGTTGTCGGGACAGCGGGGGTAGTAGTTGTTACTGGTGGTACTGAAAAGGTACTTT
s cb4.chrX              8310864 258 + 21540570 TCTTACTGTTTTGGCAGTGGAATCCAGTGAATCCCTCGGTACAAACACAACGATCGCTGTCTGGAGTTGGGAGG--------------------------------------------------------------ATTCCTCCATTAGCACAGATAATCTGGCCACAATCACGTCCACCGTACAATCCGAAGCAGTAGCAATAAGGATTTCCGCCAGCATCCTTGAGAAGCTGTCCTCCATTCTGGCAAGATGTGAGTGGTGCTGCTGGAGTGGTGGGAGCTGGGGCGATGGTAGTAGTTACTGGAggcactgaaaaaa------
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   406367 309 -  4500979 ACTTACTGTTCTGACAATGGAATCCCATGAATCCTTCTGGACATTGACAACGATCACTTGTCGGTGTTGGGAGGAAGCCTGAAAAGTAGG----------ATTTAT-------AAATTTCCTATATGGCTTAAGACATACCTCCGTTAGCACAAATCATTTGAGAACAATCATTCCCTGACCACAATCCGAAACAATAACAGTAAGGAGCACCGCTTGCATCCGTTAAGAGCTGTCCTCCGTTTTGACAGGTGGTGAGTGGAGGAGTCGGTGTTGTTGGAGAAGGAGCAATAGTTGTACTTACAGGTGGCACTGAACAAAAACGGT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   512997 309 - 33334924 CCTTACTATTTGTACAATGGAATCCAGAAAATCCCTCTGGACATTCGCATCTTTCACTTGTCGGGGTTGGCAAGAATCCTGAACAGTAAT------AGAATGTTATCTTTT--AAATTTCCTAATCAGTC-------TACCTCCGTTAGCACAGAGCATTTGCGAACAGTCGTTTCCGCTGTACATTCCAAAGCAATAACAATATGGATTTCCACTGGCATCCTTCAGAAGTTGTCCTCCATTCTGGCAGGAGGTGATCGGTGCAGCTGGAGTGGTTGGAGCAGGAGCAGTAGTTGTAACAACTGGTGGCACT--AAAACTGGGGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1627631 306 +  4147112 ACTAACTGTTTTGACAATGGAATCCGGTGAATCCTTCTGGGCACTGGCATCTTTCACTAGTTGGTGTTGGAAGGAATCCTGAACAAACTT----------TGTTATCAGTG--AAATTTCATAATCTGTT------ATACCTCCATTAGCGCAAAGCATTTGAGAACAATCATTTCCAGAGTACAATCCGAAACAATAACAGTAAGCAGCGCCATTGGCATCAGTCAAAAGTTGACCTCCGTTCTGGCAAGAAGTGATTGGAGTGACCGGTGTAGTTGGAGCTGGAGCCATTGTGGTAGTCACTGGTGgcactgaaaaacagaa--
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold10737   14342 311 +    47500 ACTTACTGTTTTCACAGTTGAATCCAGTAAATCCTTCTGGGCACTCACAACGGTCGTCAGTTGGGTTTTTGAGATATCCTGAAAGTTTTTACTACCATCGATTGAtcggtttcaatttt---------tt------ttacctcCATTAGCGCAAATAAGTTGAGAACAATCTCTTCCACTATGAAGTCCAAAACAATAGCAATACGGATTTCCGGAAACGTCGTTAAGAAGTTGTCCTCCATTCTGGCATGACGTAAGTGGAGCTGGAGATGGAGTAGGTGCAATAGTAGTCGTGGTAGCCACAGGTGGcactgaaaacaaaattt
i caeJap4.Scaffold10737 C 0 I 24

a score=-10961.000000
s ce10.chrX             3242443 44 + 17718866 TTCTTAAAAGTCTTATAT---AAACTTCTTATATACACTACAAAGAA
s cb4.chrX              8311122 36 + 21540570 -----------ttcaaatgagaaaatccgtaaaataagcaaaaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   406676 28 -  4500979 ----------CTCTATACcatattatttttgatattga---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   513306 26 - 33334924 ----------TTTTAAAT---GGCAAACTTGAAAA--------CACC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1627937 30 +  4147112 --------------atac---atTATGCTTGAAAGGAATATGCAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   14653 24 +    47500 I

a score=692344.000000
s ce10.chrX             3242487 1135 + 17718866  
s cb4.chrX              8311158 1092 + 21540570  
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   406704 1087 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   513332 1118 - 33334924  
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1627967 1134 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold10737   14677 1080 +    47500  
i caeJap4.Scaffold10737 I 24 C 0

a score=-466.000000
s ce10.chrX             3243622 11 + 17718866 AAAATATTAGT
s caeRem4.Crem_Contig0   407795 10 -  4500979 AGAA-ATTAAG
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   514454 10 - 33334924 agaa-atcaGT
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1629106 11 +  4147112 AGGGTATTAGT
i caePb3.Scfld02_0      I 5 I 24
s caeJap4.Scaffold10737   15757  7 +    47500 ACAGtat----
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8312250 53 + 21540570 I

a score=-5015.000000
s ce10.chrX             3243633 25 + 17718866 TTTTTTGGAAGCAAACTTGAAGGGG-
s caeRem4.Crem_Contig0   407805 20 -  4500979 ---CCTTTAAG--AACATGAAAACA-
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   514464 18 - 33334924 -----TAGAAC--GGCGGGGAATTA-
i caeSp111.Scaffold629  C 0 I 6
s caeJap4.Scaffold10737   15764  8 +    47500 ------------------gaagaaga
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1629117 24 +  4147112 I
e cb4.chrX              8312250 53 + 21540570 I

a score=0.000000
s ce10.chrX             3243658 7 + 17718866 TATTATC
e caePb3.Scfld02_0      1629117 24 +  4147112 I
e caeJap4.Scaffold10737   15772 0 +    47500 C
e cb4.chrX              8312250 53 + 21540570 I
e caeSp111.Scaffold629   514482 6 - 33334924 I
e caeRem4.Crem_Contig0   407825 10 -  4500979 I

a score=413074.000000
s ce10.chrX             3243665 1119 + 17718866  
s cb4.chrX              8312303 1194 + 21540570  
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   407835 1131 -  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629   514488 1140 - 33334924  
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_0      1629141 1149 +  4147112  
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold10737   15772 1162 +    47500  
i caeJap4.Scaffold10737 C 0 I 983

a score=70421.000000
s ce10.chrX             3244784 68 + 17718866 CTTCCACATAGAACTTGTCGTTGTAGGCAATTGGGAAGACATCTTCATTGAGCTTTTTCAGTTGCTGA
s cb4.chrX              8313497 68 + 21540570 CTTCGACGTAGAATTTGTCGTTGTAGGCGATGGGGAAAACGGCTTCGTTGAGCTTTTTGAgttgctga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   408966 68 -  4500979 CCTCCACGTAGAACTTGTCGTTGTATGCAATCGGAAAGACGGCCTCGTTGAGCTTCTTGAGTTGCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   515628 68 - 33334924 CCTCCACGTAGAATTTGTCGTTGTAGGCAATTGGAAACACTGCTTCGTTGAGTCTTTTGAGTTGCTGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1630290 68 +  4147112 CTTCGACGTAGAATTTGTCGTTGTAGGCAATTGGAAAGACagcttcattcaattttttgagttgctGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   17917 68 +    47500 CCTCCACGTAAAACTTGTCGTTGTAGAGAATTGGGAATACGGACTCGTTGAGCTTTTTGAGCTGCTGA
i caeJap4.Scaffold10737 I 983 C 0

a score=1820.000000
s ce10.chrX             3244852 2 + 17718866 AA
s cb4.chrX              8313565 2 + 21540570 aa
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0   409034 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 108
s caePb3.Scfld02_0      1630358 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold10737   17985 2 +    47500 AA
i caeJap4.Scaffold10737 C 0 I 3459
e caeSp111.Scaffold629   515696 0 - 33334924 C

a score=-2459.000000
s ce10.chrX             3244854 45 + 17718866 ---TTATAG----TAAATTGAAAAATCGAGTTTCGAGTTTT--ATGAAGT-------TCGT-------
s cb4.chrX              8313599 60 + 21540570 ---TGTTAA----TCAACTGGAACAt-caaatcagaatttttaaagaggACAAGTTGCTGAAGCTGGC
i cb4.chrX              I 32 I 138
s caePb3.Scfld02_0      1630364 52 +  4147112 TCATGATAAGTTTTCATgcagaata--aaaattagtgttttggaCGAAGA-------CTGA-------
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e caeSp111.Scaffold629   515696  0 - 33334924 C
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-77.000000
s ce10.chrX             3244899 59 + 17718866 GTATTTTTTGTTGAGGTTTGAAAAACAAATAGGATTTCAGAAATCGCGTTTTACTGATG
s caePb3.Scfld02_0      1630416 35 +  4147112 AC-TTCCGTGAAGATGTTCGAAAGACA-----------------------TCACTGGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313659 138 + 21540570 I
e caeSp111.Scaffold629   515696  0 - 33334924 C
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=302.000000
s ce10.chrX             3244958 2 + 17718866 AA
s caeSp111.Scaffold629   515696 2 - 33334924 AA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1630451 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 I 92
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313659 138 + 21540570 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-679.000000
s ce10.chrX             3244960 68 + 17718866 AATGGGAAGGCTAAATTAAATTTAAAAGGTGGAGGTTAAAATCATCTGTTTGGTTCAAGAGTGAGTGA
s caeSp111.Scaffold629   515698 27 - 33334924 AATGTGAATGC----------------------------AATGATGCGTTT-------------GTGC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1630453 92 +  4147112 I
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313659 138 + 21540570 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-1044.000000
s ce10.chrX             3245028 11 + 17718866 AGACCTTCAGC
s caeSp111.Scaffold629   515725  2 - 33334924 --AG-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1630545  8 +  4147112 AGAGCTTC---
i caePb3.Scfld02_0      I 92 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313659 138 + 21540570 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-28680.000000
s ce10.chrX             3245039 174 + 17718866 AAACTTTGAGTGTGCTTCAGCAA------ACTTTGAGTTCAACTACTTGTCTGACATGC-------------TCGGTAGGCTACAACGTATTTTAACAGCTCATTCTATGCCAATTTACA-------CAATTTT---------------CACAGGTACAGAATACAGGGCAATGTT------GAAAGCTTCAAAAAT--------------GAACAGCAAAGTCGGCCTAGGTTT
s cb4.chrX              8313797 171 + 21540570 ATAATTGGAGTg-------gttatagaattttttgactt------cttgTTTTCCATCTGCATCCTCATTCATTgttaaattagaaaa------aaaaactgg--------cacctAATAATCCTGTTAGCTTT-----------------------ACTCGTGTCGATTGGGttttatgttgaaaaatttaacaattgattacaaaaatggctcaaatgA--------------
i cb4.chrX              I 138 C 0
s caeSp111.Scaffold629   515727  85 - 33334924 --ATGTCACATG-------ATAA------TTTATGAGTT------TTTCCt----------------------------------------------------------------------------cagtttt--------------ccaaaaataagtcttgaag------ttttct---gaaa--------------------------ctctATAAAG----CAAAGTCAT
i caeSp111.Scaffold629  C 0 I 4
s caePb3.Scfld02_0      1630553 176 +  4147112 --ACATCACGTG-------AGTA------AACCTGAGTA------GCTTCTTTATATTCGAGTGAAC-----TAGCTAGGCCGTGAAA------AACCATTTG----------GTTGACAA------CAGATTTTGGTTGTGCCTGGACCGCGGATAATTCATTCAGA-CGGTTCTTCTACAGAAAAGCACGAGTCTTCAT----------GCTCTATGAAGTCGCCATAGACTT
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-1335.000000
s ce10.chrX             3245213 21 + 17718866 GCTTTTTTAGCCATTCACAGA
s cb4.chrX              8313968 21 + 21540570 GGGATCCAAACAAGCTCCAAA
i cb4.chrX              C 0 I 282
s caeSp111.Scaffold629   515816 16 - 33334924 CGTTTCTTA-----CTCATGA
i caeSp111.Scaffold629  I 4 C 0
e caePb3.Scfld02_0      1630729 32 +  4147112 I
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-42.000000
s ce10.chrX             3245234 11 + 17718866 ATATATATAAA
s caeSp111.Scaffold629   515832 11 - 33334924 CTTTCTTTCAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1630729 32 +  4147112 I
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313989 282 + 21540570 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-3563.000000
s ce10.chrX             3245245 70 + 17718866 -TCGGAACAGAATTTTATTGAGTGGGCTCACATTCACTGCGTGCAAGAGTAATATTCAATTTTTTAAGACG
s caeSp111.Scaffold629   515843 25 - 33334924 TCTGAATctaaagtttttcaa-------aaca---------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1630761 42 +  4147112 -ttcaaaaagaaatttagcAA-------CCCA-----TGAGCGCAGGCCTATTAG----------------
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313989 282 + 21540570 I
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=-233.000000
s ce10.chrX             3245315 97 + 17718866 CAAAAATTAAGGCTACATCATATTCACATTGATCGAGAAAATATGGGTTTCATTTAATATTATGAATTCTAGTTCGTTTCATAACATACATTTCCTT
s caePb3.Scfld02_0      1630803 78 +  4147112 GAAGTCTTCAGGCTTCTTCAC--------------AAGAAGTATTGGTTTTGTGCTCTATT-TCAGCTCAAATCC---TCCAACCACAAGTTTAC-T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313989 282 + 21540570 I
e caeSp111.Scaffold629   515868  0 - 33334924 C
e caeRem4.Crem_Contig0   409036 108 -  4500979 I

a score=300.000000
s ce10.chrX             3245412 1 + 17718866 C
s caeRem4.Crem_Contig0   409144 1 -  4500979 C
i caeRem4.Crem_Contig0  I 108 C 0
s caePb3.Scfld02_0      1630881 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   17987 3459 +    47500 I
e cb4.chrX              8313989 282 + 21540570 I
e caeSp111.Scaffold629   515868 0 - 33334924 C

a score=455.000000
s ce10.chrX             3245413 4 + 17718866 AACA
s caeRem4.Crem_Contig0   409145 4 -  4500979 ACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1630882 4 +  4147112 AGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   21446 4 +    47500 aaaa
i caeJap4.Scaffold10737 I 3459 C 0
e cb4.chrX              8313989 282 + 21540570 I
e caeSp111.Scaffold629   515868 0 - 33334924 C

a score=-1314.000000
s ce10.chrX             3245417 12 + 17718866 AATTAATAAATT
s cb4.chrX              8314271 12 + 21540570 aacTCAAAAACA
i cb4.chrX              I 282 C 0
s caeRem4.Crem_Contig0   409149 12 -  4500979 ACTTTTCAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1630886 11 +  4147112 -GTTTTctagga
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold10737   21450  9 +    47500 aattaaaaa---
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   515868  0 - 33334924 C

a score=81996.000000
s ce10.chrX             3245429 472 + 17718866  
s cb4.chrX              8314283 523 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   409161 507 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   515868 527 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1630913 544 +  4147112  
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold10737   21459 637 +    47500  
i caeJap4.Scaffold10737 C 0 I 8273

a score=-4700.000000
s ce10.chrX             3245901 232 + 17718866 AGTAAA------------ACACGGAGGATAACCGCGCGCAAA---TTGTGTTTATTCAAAACAATC----GCCCTCTGTTTAG-CG----TTGCGGAGCGTCGTTT-------GT--AC---------ATACGAAACTAATGTGACTAGCCGGGAAA---GA----GAGGAGACGA------GAAGAGAACACATGTGTTA-AGAGGCAGGTGACGACGGCCACCTCGTGGTGGC--TTTTGTTTA----------------AAATAAAATCGGAAGTATAAAAAATAGTTTATTAACACA-AGAAT------------------
s cb4.chrX              8314806 252 + 21540570 GTGAGATATCGGGGGAGAGGACACAGGTAATCTGCGCGCGCGCGAACACCCGAATTCAAATCGGCCTACTGCGCGTTGTTTAG-CGG---GTGCGGAGTGTCGTTC-------GAGGAG---------ATGGGCAA-----------AGCGAGAAAA---GG----AGAGAGATTGTGTAGCGAAGTAAACACACGTGCGG-CGGCGCAGGT---GACGGCCACCTCACTGCAG---------TCTCTTATAAATAC-----TTTCTAAACATAACTTTTGCTAAgtgaagttt--------gtttttttttgcag---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   409668 263 -  4500979 ATATGA-------------AACGTGGTTTGACTGGGcgataaataataataatattcaaaaacgAACGC-GCGCCTTGTTTAA-CGGAATGACCGGAGTGTCGTTT-------GC--AC---------GTAAACGG-----------AGGGGGAAAC---GGGGGAAGCGAGGGGGCATAGGAGAGTAAACACACGTGCGA-TGAGGCAGGT---GACGGCCACCTTGTGGCAGCAGTTTGCTTCATTTACGAATACAATTGCATCCGAGTTTTGTGTTTAGAAAGCGAATTTA--------AATATTGTTAAAACAAGAAT---
i caeRem4.Crem_Contig0  C 0 I 55
s caeSp111.Scaffold629   516395 223 - 33334924 AAGAAA------------ACGCGGGGATATAATACGCGCGAAAT-ACGTATGTGTTCAGAAAAGGAC---GCGCATTGTTTAGTCG----AAACGGAGTGTCGTTG-------GC--AC---------GTGAACAA-----------AGTAGGAGGGATTAG----GGGGCGACTGAGT---GAAGTAAACACACGTGTTG-CG--GCAGGT---GACGACCATCGTGTGGTAGTAGTATTGGTTG----------------TATTAGAACAGAAATT--------GGATATTT--------AGCATTTATTATCa------a--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1631457 251 +  4147112 ATGAAA------------ACAGGGAGATTTGATGCGCGAGA----ATGGCTATATTCAAAATCGAGA---GCATGCTGTTTAG-CG----AAACGGAGTGTCGTTGCATATATAC--ACcagaaaaaggggaagaa-----------aagaaaagag---ag----tgggCGACCAACT--GGGGGTAAACACACGTGTTGATG--GCAGGT---GACGGCCACCTTACGGCAGCAGTTTTGGCCG----------------tattagaacaaaattttcacgAA-TGATATCTCCGCGCTAGGCATTTCTCGTAG------AAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I

a score=-8877.000000
s ce10.chrX             3246133 71 + 17718866 TC---------AAAAAAAAATTAACACGAAAACTTAAATCCCTTACAAGTTC-AATTAAAATATATATTCATTTATTTATG----------
s cb4.chrX              8315058 70 + 21540570 -----------aaaaaaagcttaaaaatgagacgaaaaacgtgatgaaaaaT-AACACAGATGTT---------ATATTCAAAAGTCTGGG
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold629   516618 79 - 33334924 ttaaatttgattttaaatagttgaaacagaaaaaaagtaggcTAAGAACACC-TACT--AATTTTTCTGCG---TTCTATAAATG------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1631708 85 +  4147112 TCaggtaggaaaaaaaagactcgGAATAGAACTTTCGTAAATTGAGAGAATTGTACTCGAATTTCCATACACGTTGGTAGAAAAG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e caeRem4.Crem_Contig0   409931 55 -  4500979 I

a score=5009.000000
s ce10.chrX             3246204 265 + 17718866 -TTTG--------ATG-----TTTAATAACGT--CATAGAAATTTTTTTATTGCAAGACATATGTATGAGTCAGGTTGATTCGTCTAACAA------AAAACGAATC--ACCTGG-AAAGAATGAT---GGGCGCGGTCGAACACGAAAGATT---------------TCAAATTAAATTTTATTGGTGTTGAACTTCATTAAGGAA--------GTTT-----------------------GTCGTGA----------------------------------------------------AAAGTACAT---ATGAAAAAG-----------ATA-AACTT-------TTGGATTTTACTTTCAACTTAATAAGTTGGAAAATGTAAAATTATTTGAAATTTTAATTGAA----GA---------------------------------
s cb4.chrX              8315132 259 + 21540570 -Ttgggaagaaaaagg---------aaaacgtCACACAAA-----TCCCATGG--GTGAATTGGTATGAATCA---CGATTCGTCCAACAACCAAACACAACGAATC--ACccgg-aaaaaagaatgaaggGTGCGGTCAAAca-gata-ttttttctcacGTCAGTTTCTACTTTTTactaaatgaaaa--------aataaaaaaaa------attt-----------------------gtatttt--------------------------------------------------------tccttTGGTTTTTAATG-------GCTACTA-ACCta-------gaatttccagttttc---------------------------------------tagcaaaa----gaaaaag---------------ttctcATAGAATG
i cb4.chrX              I 4 I 25
s caeRem4.Crem_Contig0   409986 299 -  4500979 -TTTG--------AAG---------AAAACGT--CATAAA-----TCCCATGG--GGGAAATCGTATGAATCA---CGATTCGTCCAACAACCA---ACAACGAATC--ACCCGG-AAAAAAGAAT---GGGTGCGGTCAAACACAATAGTTCTTTTTTACATCAACGTCAAATTCTTTTTCGATAATGACGAACTTGAATAAAAACAGAA-GTCATTA-----------------------ATCTTAT--------------------------------------------------------TCCTT---TTTATAGGA-------TCAATta-atctt-------ttctcttctcatttcaa------aagacata------aaaatgatttaaag--gTAATAAAACCCCGAAAAAATTGgacttcttttccttttcattaAAAG
i caeRem4.Crem_Contig0  I 55 I 85
s caeSp111.Scaffold629   516697 276 - 33334924 TTTAG--------AGGAAATGCTTTGAAACGT--CATAAAAA-TCCTCCATGG--GAAAATCAGTATGAATCA---CGATTCGTCCAACGGCAG---ACAACAAATC--Acccgg--aaaaagaaa---gggtGCGGTCAAACgcaatagttttttct-acaTCAACGTCAAATCGTTCATCGATAATGACGAacttgaatagaaaatacaTGTCATTA-----------------------ATCTCTT--------------------------------------------------------TTACT---TTTT--ATG-----GGCCTGACACATCTT-----------TTGTTctctagaa--gaagaagattaa------aagacgattcgaaa-------agaa----atcaaga----------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1631793 378 +  4147112 AATGG--------AGGGGGTTTCGAAAAACGT--CATAAAA----TCCCATAG--GGAATTC-GTATGAATCA---CGATTCGTCCAACGGCCA---ACAACGATTCCAccccggaaaaaaagaaa---gggtgCGGTCAAacacaatagttttttttcacatcaaCGTCAAATTGTTTTCCGATAATGACGAACTTGAATGGAAAATATCTATCACTACTTCACTTTTATGGCCCTTATTcatcttttgttcttttgaagaaaatagatTATGAAGAATTCAGAGAATAAAAGACTACTAAAAGTTAGT---GTTTCAATGATTTTAGGCTAATA-ATTTTAGAGCAataaatttctcttttcag--taATGAGTTCTT------AAAATTATTCGAGA--AATTTAGAA----TCCAAAG----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I

a score=-4862.000000
s ce10.chrX             3246469 14 + 17718866 -----AGTTTAAACCATT-----------------T
s cb4.chrX              8315416 35 + 21540570 AGTTTACTAGAGATCATTGACGTTGGTCTTGGTAT-
i cb4.chrX              I 25 C 0
s caeSp111.Scaffold629   516973 11 - 33334924 -------tCTAACGAATT------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632171 14 +  4147112 ----TATTTTGACTAATC------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e caeRem4.Crem_Contig0   410285 85 -  4500979 I

a score=-49938.000000
s ce10.chrX             3246483 178 + 17718866  
s cb4.chrX              8315451 274 + 21540570  
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   410370 288 -  4500979  
i caeRem4.Crem_Contig0  I 85 C 0
s caeSp111.Scaffold629   516984 341 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632185 430 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I

a score=-1910.000000
s ce10.chrX             3246661 16 + 17718866 CTGCCTCACCTCAATG
s caeRem4.Crem_Contig0   410658  8 -  4500979 CGGCTTTT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   517325 13 - 33334924 CGGCTCAA-CCTAG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632615 14 +  4147112 CGGCTAAACCCCGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e cb4.chrX              8315725 26 + 21540570 I

a score=23469.000000
s ce10.chrX             3246677 73 + 17718866 CACTGCCAACA----CTCGCTCTCTTCGCACATTGGCAGCTGCT---TTTCGAGGTGAAAAGG---TAAAAGGGAGAGT--------GAGA--
s cb4.chrX              8315751 85 + 21540570 ---CACTCAGA---GCTCGCTCGCCTCACACATTGGCAGCTGCTGTGTTTGGGGCTAGGTGAGAACTACAA--AACATTCGGATGAGGAGGAA
i cb4.chrX              I 26 I 118
s caeRem4.Crem_Contig0   410666 77 -  4500979 GGCGGCTCACACTTGCACACTCTATTCACACGTTGGCAGCTGCC---TCTGGGTTTGGATAAG---Tacaa--aacatt--------gagaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   517338 74 - 33334924 CGTTGCACACACTTGCACACTCTACTTACACATTGGCAGCTGCC---TTTGAGGTTGGATAAA---TACAA--AACAAT--------GAG---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632629 75 +  4147112 CGTTGCTCACACTTGCACACCCTACTCACAGATTGGCAGCTGCC---TTTGGGTTTGAATAAG---TAAAA--AACATT--------GAGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I

a score=273.000000
s ce10.chrX             3246750 1 + 17718866 A
s caeRem4.Crem_Contig0   410743 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1632704 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e cb4.chrX              8315836 118 + 21540570 I
e caeSp111.Scaffold629   517412 0 - 33334924 C

a score=-1168.000000
s ce10.chrX             3246751 31 + 17718866 ATTTTTTAAAAAATAG---TAATAAGTTTTAACT---
s caeRem4.Crem_Contig0   410744 30 -  4500979 -------gagagttGGGCATGAGGAATCTCATTTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   517412 21 - 33334924 -------GAAAGACTG---CGAAGAATCTTA------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1632705 21 +  4147112 I
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e cb4.chrX              8315836 118 + 21540570 I

a score=-3729.000000
s ce10.chrX             3246782 57 + 17718866 TCAGATTTTTGTTTTGTTTTAAATTTTAA-------------AATGAGACACGAAAGTTGAAAATGATTT
s caeRem4.Crem_Contig0   410774 51 -  4500979 ------CCAAATCCTTagaaaaacattcattttgaattcttcgggaaaacagaagaa-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   517433 53 - 33334924 TCTAATTTATATTCTTTGCACGATTTCTA---TG--------GGTGAACcgggaagaaaacaaa------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632726 60 +  4147112 TCTAATTTATATTCTTTGCACAATTTCCA---AGGACTC-AAGGAGAAACTGAACAATAGcgag------
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I
e cb4.chrX              8315836 118 + 21540570 I

a score=14295.000000
s ce10.chrX             3246839 277 + 17718866 CGAATTTATACGAAAA-TGGAAAACTACGAA---CTAGCCCGTTTGTC--TGTGTTATCATATTTACCATCACGTCAAAAAAGGCCCATTTTAGATGATAATGGGTTT-TGT--GGATCGT-----TTTCGCTGAAACAATTATTTCTGAGTA---ACGGGT-AGCGA--AGAATACCGACAAAA---------------CTTGAACGATCGTTG-----AATGTTGACATTGCACGACATACAA---ATATTTATTACAATTATTTTGAGAAC-------------ATGAAAAGAA---------GGTTTACTTAACATTGAATTCAGAGA---AAAAATGTAG
s cb4.chrX              8315954 278 + 21540570 ----------CGAATAGAAGGAAACAGCAAGTTTCCGAgtcgtttttc-gttttttatcaaatttatcACCACATTAAA-AAGGCCCACTTATGATAATGACAC---TGTGTAGTGGTGGCGG-TTTTTCGCTGAAACAATTC---CGAGAAACTGATCGAT-GAcat--gaagaaggaaaaaaaagttttattgcTGTTCAGTAACGAGAGGAGGAACGATAGGGGA-ATAAAACGGGGCGAGA-----TTTTATTAC-ATAGGTTTGACAgaaaaaagccttgaaaaaagaaaaa--------------------------------ttg---aaaagcg---
i cb4.chrX              I 118 C 0
s caeRem4.Crem_Contig0   410825 293 -  4500979 -------atgtgAGAATCAGGAAACTACAAA---CTGGCttgtttcacagttttttatcaaatttattACCTCTTCAAA-AAGGGTCAATTTTGATGATAATAA---T-TGTAAGGGGCGC-----TTTCGCTGAAACACTTT---GTGGAAA------GATAGGCAC--AAAGTTCCGAGAAA----------------CTGAAGTGATCGATGGTATGAAATTGCACATAAAATCGTAcaaaagaaacttttattgCTGCCATTTCGATAGAAAGTAACgaccaaaaaacgaaaaaacgagAGTGGTTTTATTATAGTTTA--CCTTTTG---GAAAGCAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   517486 283 - 33334924 -----------ga------ggaAACTACGAA---ACATCAtgcttctc---tttttatcataTTTATGACCACTTCAAAAACGGGCCTTTTGTGGTGATAATGG---T-TGT--GGGGCGCTTGCTTTTCGCTGAAACACTAT-------AAA---ATCGA--AGCACAGAAAATTCGGAGAAA----------------CTGAAATGTTCGATGGTATTGTATTGTACATAAAACGATACAAAGAAAACGTTTATTGCTGtcattccaagaaa--aaagcgaCGAAAAATGTAAGA-TCGGGTGCGGTTTTATTATAGGTTA--CTGGAGAACGaaaattggcg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1632786 276 +  4147112 -----------gaaga-aggaaaactaCGAA---ATAGcatgtttctt--atttttatcatATTTATGACCGC-------ACGGCCCGTTTTTGATGATAATGG---C-TGT---AGGCGCTT-CGTTTCGCTGAAAGACTTT------GAAA---GTTGA--GGCAC--AATATTCCGAGAAA----------------CTGAAGTGATCGATGGTATCGAAGTCGATAT-AAATGACACCAGAGGAATGTTTATTGCTGCCAATTCACTAGA-TAAAACGAGGCAATGACAGAAT-TTTTGTGGGGTTTTATTATATGTta--ccattga---aaaattgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   22096 8273 +    47500 I

a score=-8791.000000
s ce10.chrX             3247116 34 + 17718866 A------------------AAATAGGAAAATAAA-------GATCACAAGAAAAAAGCA
s cb4.chrX              8316232 26 + 21540570 ------------------tgaataa---------------tgataataaaaaagtagta
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   411118 37 -  4500979 G-GTAAGAGTGT-----TTGAATGA----------------GATAATacaaaggagaaa
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold629   517769 41 - 33334924 g----------------gtaaataagaaaatacattgtactggcaataaaaaa--tgta
i caeSp111.Scaffold629  C 0 I 20
s caePb3.Scfld02_0      1633062 59 +  4147112 gcataaaaataaaaaaaatgaagaagaatatgggttgtatagataataaaaaagcggaa
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold10737   30369 38 +    47500 ------------------Aatacaagaaaacaaaatga---tttcatgaaaaatgagcA
i caeJap4.Scaffold10737 I 8273 C 0

a score=-2153.000000
s ce10.chrX             3247150 1 + 17718866 -T
s cb4.chrX              8316284 1 + 21540570 -G
i cb4.chrX              I 26 C 0
s caeSp111.Scaffold629   517830 1 - 33334924 -a
i caeSp111.Scaffold629  I 20 C 0
s caePb3.Scfld02_0      1633145 1 +  4147112 -g
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold10737   30407 1 +    47500 T-
i caeJap4.Scaffold10737 C 0 I 34
e caeRem4.Crem_Contig0   411155 43 -  4500979 I

a score=760.000000
s ce10.chrX             3247151 35 + 17718866 AAATACCAAATTACAGAGCTCAGTGACCGTGTTCT
s cb4.chrX              8316285 20 + 21540570 AAACGG-AGAT----GAGC-ATGTGA---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   517831 29 - 33334924 aaacgg-aaat----gagc-aagtgagagcataaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1633146 30 +  4147112 aaatggaaaat----gagc-atGTGAGAACGTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   30408 34 +    47500 I
e caeRem4.Crem_Contig0   411155 43 -  4500979 I

a score=1092.000000
s ce10.chrX             3247186 2 + 17718866 AT
s caeSp111.Scaffold629   517860 2 - 33334924 at
i caeSp111.Scaffold629  C 0 I 10
s caePb3.Scfld02_0      1633176 2 +  4147112 AT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold10737   30442 2 +    47500 AT
i caeJap4.Scaffold10737 I 34 C 0
e cb4.chrX              8316305 0 + 21540570 C
e caeRem4.Crem_Contig0   411155 43 -  4500979 I

a score=208175.000000
s ce10.chrX             3247188 448 + 17718866 GATTTATGTTTCCATATTAATGCTTATCACCAATTACTAAAGAATGAATTTCAGTACCCGCACGAACTCGACAATCGCAGCACGTTGAAGTTGTGATAACTGTGGGAACCCAGCGTCCGTTATCACGACGGAGCACATCAACGTTTCGATATTGTTGGACACACTCACCCCAGCCTATAAATATCCGAATTTTAGATGAAAACTCTTACAGAATCTAGGAGTTTAGAATACGGATTATAGATCGTTTGCACTTTTTTTATATTGTAATAAAAATACGTGAATTTTTATT-----TGAATACTTTGAAATAACCTTGCTATGCTATAAGTTTATTTTTCAATTTTTCAACACTAACCTGATAAGCAAAAATCATCTGGCTTACAACTCAGTTCGTTTATGATTCTTGGAAAATAATTTTCTGGTAGTTGTCGCCACGTCCAACAAGACCCTAAA
s cb4.chrX              8316305 320 + 21540570 GAGTTGTGACCCCCCATCAGTGCTTATCACCAATTACAAGAGAATGAATTTCTGTACCCGCTCGAACTCGACAGTCACAACATGTAGAGGttgtgattactgtaggcaCCCAACGGCCGTTGTCTCTCCGAAGGACGTCGACGTTGCGGTATTGTTGCACACATTCTCCCCAACCttaa-------tatttttga-------------------------------------------------------------------------------------cttttcttt-----caaattt-ttgagaaaaa-------------------actgtt----------------ACCTGAGAGACAGTAATCATCAGGTTTACAACTGAGCTCATTGATAATTCTTGGAAAATAGTTTTCCGGAAGCTGCCTCCAAGTCCAACACGACCCTAAA
i cb4.chrX              C 0 I 486
s caeRem4.Crem_Contig0   411198 321 -  4500979 GACTGATG---CCTCATCAATGCTTATCACCAATTACAAGCGAATGTATTTCAGTACCCGCACGAACTCGACAATCACAACAAGTTGAAGTTGTAATTACAGTTGGTACCCAACGGCCGTTGTCTCGACGTAGAACATCTACGTTCCGATATTGTTGAACGCATTCTCCCCAACctgaa-------taattgt----------------------------------------------------------------------------------------tttttttt-----ctaatttgttCACCTGAT-------------------ATTTTCAAAC----------CAACCAGACAAACAATAGTCATCCTGTTTGCAGCTGAGCTCGTTAATAATTCttggaaaatagttttctggTAATTGTCTCCATGTCCAGCAGGACCCTTAA
i caeRem4.Crem_Contig0  I 43 I 27
s caeSp111.Scaffold629   517872 311 - 33334924 cgatggTG---ATTCATCGATGCTTATCACCAATTACAAGAGAATGAATTTCTGTACCCGCACGAACTCGGCAGTCACAACACGTTGACGTCGTTATGACTGTTGGAACCCATCGTCCGTTGTCTCGACGAAGAACGTCCACGTTTCGATATTGTTGAACACATTCTCCCCAACCTG---------TGA---TAG--------------------------------------------------------------------------------------ATAGTGGTAAAGACGATTCT--------AAA-------------------GTCTTTCGGT------------ACCTGACAAACAGTAATCATCGGGTTTACAACTGAGTTCGTTAATTATCCTTGGGAAATAGTTTTCCGGCAGCTGTCTCCACGTCCAGCACGACCCT--A
i caeSp111.Scaffold629  I 10 I 2
s caePb3.Scfld02_0      1633188 316 +  4147112 GATTGGTG---CCTCATCAGTGCTTATCACCAATTACAAGAGAATGAATTTCTGTACCCGCTCGAACTCTACAGTCACAACACGTGGATGTTGTAATGACTGTTGGCACCCAACGTCCATTATCACGACGGAGGACGTCCACGTTTCGGTATTGTTGAACACATTCTCCCCATCCTGAA-------Tgacttcaa--------------------------------------------------------------------------------------tttgtttt-----cgatttg--------aaa----------------tctGTTTTCATTT------------ACCTGACAAACAATAATCATCGGGTTTACAGCTCAACTCGTTTATAATTCttggaaaatagttttcaggCAACTGCCTCCAAGTCCAACATGAccctgaa
i caePb3.Scfld02_0      I 10 I 2
s caeJap4.Scaffold10737   30444 325 +    47500 GAGCTGCG--TTTTCTTTACCGCTTGTCTCCAACCACCAAGGAATGAATTTCGGAACCCGCATGAATTCGACAGTCACAACAAGTGGACGTGGTGATAACCGTTGGCACCCAGCGACCATTTTCTCGCCGTAAAACATCGACGTTTCGATATTGCTGAACACATTCTCCCCAACCTATA-------AAATCAGAG------------------------------------------------------------------------------Tacaaaatgttttgtt-----gttgtttttcgtGTTAGT-------------------GTTGT-----------------ACCTGACAGACAATAGTCATCCGGTTTGCAGCTGAGCTCGTTTATAATTCGGGGAAAGTAGTTTTCCGGCAACTGACGCCATGCCCAACACGATCCTAAA
i caeJap4.Scaffold10737 C 0 C 0

a score=0.000000
s ce10.chrX             3247636 1 + 17718866 C
e caePb3.Scfld02_0      1633504 2 +  4147112 I
e caeJap4.Scaffold10737   30769 0 +    47500 C
e cb4.chrX              8316625 486 + 21540570 I
e caeSp111.Scaffold629   518183 2 - 33334924 I
e caeRem4.Crem_Contig0   411519 27 -  4500979 I

a score=-6874.000000
s ce10.chrX             3247637 30 + 17718866 ACTCCATTAATTAGTATTC------------TCAGAACTTTA----
s caeSp111.Scaffold629   518185 21 - 33334924 AC-------ATATATATTT--------------AGAAGAAGA----
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1633506 34 +  4147112 ac-------atgaaaattt-cagtttttcaatccGAAATCCA----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold10737   30769 34 +    47500 ------------ACAACTTGGAATGAAAGAggctaaaaattatttt
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8316625 486 + 21540570 I
e caeRem4.Crem_Contig0   411519 27 -  4500979 I

a score=-431.000000
s ce10.chrX             3247667 5 + 17718866 TACTT
s caeRem4.Crem_Contig0   411546 5 -  4500979 TACCC
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold629   518206 5 - 33334924 TAGGC
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0      1633540 5 +  4147112 TATGA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold10737   30803 5 +    47500 ttttt
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8316625 486 + 21540570 I

a score=179383.000000
s ce10.chrX             3247672 414 + 17718866 TACCGCATAACGCTAGCATATCATCTTCAGAATCGCCCCGTTGCATGCAATTTATCGTGAATCTTTTACCAATCACTACAGAAGGATTTGCTCGCTTTTGTCGATCTGAAATT-----------TTTTTTCTGAAACA-GAACAAA-ATTTGGCA-GTTACTTTTAAATCC------------GC------CAAACAATCCTCCAAACCAATTATGGTTATTATTGTTTTCTCCAGA------ACCTCCGCCGCCCCAACCT---GGAAACCCAATATTCCCACCG---CCGCCAGTGCCACC---TCCCCATCCAGGAACTTGTGGAACTTGAGGAACTGCTGGAGCGGGTGCTGGCTGG------ATTTGAACTGGCGTT------TGGGGGGATCCACCACCTCC------GCCATTTCCTTGA---------CCATTGCCGTTA---CTTCCCCATCCACCTTGCCATCCATTTCCGACAGCTGAAA-
s cb4.chrX              8317111 425 + 21540570 TACCACATAATGCCAGCATATCATCTTCTGAGTCTCCTCGGTTCATGCAATTAATAGTAAACCGCTTCCCGATAATTGTCGGTGGCTCTGCACGTTTTTGacggtctgaaaaaaag---cagtAAATCAACAGCAGCT-GCATAACAATAATAAT-CTCACTCTTGAAACCTAATCCTCCCAAGA---TTCCGAATAG------------TGGATGATTGTTATTGTTCTCGCCTGA------tccaccacctccccaacctccattaaatccaccattaccaccaaacccgccattaccacc---TGTCCA---TGGAAGTGG------TTGAGGAACAGCTGGTGCTGGTGCGGGAGCT------GGTTGAATGGGAGTT------TGTGGCGatccaccaccacc------gccaTTTCCTTGT---------CCGTTTCCATTTCCGTTACCCCAACCACCTTGCCAACCGTTGCCaacagctgaa--
i cb4.chrX              I 486 C 0
s caeRem4.Crem_Contig0   411551 424 -  4500979 TACCGCATAATGCTAACATATcatcttcagaatctccacGTTGCATGCAGTTGATTGTGAAACGCTTTCCAATAATAGTTGGTGGTTCTGCTCTTTTTTGACGGTCTGAAAtcagg----ataatttcttttgaaact-tcCAAAGTGTTTCATT-CTCACTCTTGAATCC------------AA---TCCCAAATAGACT------GAATCCATGATTGTTGTTATTCTCTCCAGA------ACCACCTCCTCCCCAACCGCCATTAAATCCTCCATTTCCACCAAATCCTCCATTACCACC---TGTCCA---AGGAAGTGG------TTGAGGGACGGCTGGTGCTGGTGCAGGAGCA------GGTTGAAATGGAGGC------TGAGGTGATCCGCCACCTCCACCATTGCCGTTTCCTTGC---------CCATTTCCGTTCCCTTGTCCCCAACCGTTTTGCCAACCATTTCCGACagctaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   518217 420 - 33334924 TACCGCATAAAGCTAGCATAtcatcttcagaatctccACGTTGCATGCAGTTGATGGTGAACCGTTTTCCAATTACTGTTGGCGGATCTGCTCGTTTCTGACGATCTGTAACCAAAGCCTCATAATCCATCTAC-------------GTCTTTCTAATTACTTTTGAAACC------------AA---TTCCGAATAAGCT------AAATCCgtggttgttgttgttttcccCTGA------TCCGCCTCCACCCCAGCCTCCGTTAAATCCTCCATTTCCTCCAAATCCACCATTTCCA------GTCCA---AGGTATTGG------TTGAGGAACAGCTGGAGCCGGAGCAGGAGCAGGAGCTGGTTGGAAAGTTGAC------TGTGGAGGGGCGCCTCCAGC------ACCGTTTCCTTGTTGCCCCCAACCGTTTCCTTGC---TGTCCCCAGCCGTTTTGCCATCCATTTCCAACTGCTGAA--
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_0      1633546 416 +  4147112 TACCGCATAATGCTAACATATCATCCTCAGAATCTCCTCTTTGCATGCAATTTATGGTGAATCTCTTTCCAATAACTGTTGGTGGATCAGCTCTTTTATGTCGATCTGTGAACAACATTTAGAATACTACAAACA--------AGGtgtctctct-ctcactcttgAAACC------------AAAGCCTCCTAATAATCCTCCAAGAAATCCATgattgttattgttttcacCAGA------ACCACCACCACCCCAACCTCCATTAAATCCTCCGTTTCCACCAAATCCTCCATTACCACC---TGTCCA---AGGAAGTGG------TTGAGGAACAGCAGGAGCTGGGGCGGGAGCA------GTTTGGAAAGGAGGT------TGAGGGGATCCTCCACCAGC------ACCATTTCCTTGTTGACCCCATCCGTTT------------------CCGCCTTGCCATCCATTACCCACAGctagaa-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold10737   30808 410 +    47500 taccacaaAGCGCCAACATATCATCTTCCGAATCGCCTCGAGACAAGCAGTTTATTGTAAATCTTTGACCGATTATTGCCGGAGAAGTGGCTCGCTTATATCGTTCTgtcaaaaaa--gttgcaatttatttcaatttatcaaaaaaataataat-cttACGCTTGAATCC------------TC------CGAATATCCCTCCAA------------TGCCATTGTTATCTCGAGCCTGTGTTCCACCGCCACCCCAGCCTCCTCCAAAATGACCACCACCACCAATTCCGTTACCCCCGCCATTTGACCAGACAGGAGTTGG------TTGCGGAGCCGCTGGGGCAACAGCAGGGTGG------ACAGGGACGGGTGGTGTCGCCTGCGGAAATGCACC------------CCGATTGCCTTGC------------------------TGTCCCCATCCATTTGACCACCCATTTCCGACAGCTGAA-A
i caeJap4.Scaffold10737 C 0 I 40

a score=-47597.000000
s ce10.chrX             3248086 155 + 17718866 AGCTGATATTTTTGAAATTTTCAATGTGTATCGTAATTTTGTAAAAATGTCGTAAAAGTCCGT------------------------------------------TAAAGGAGCACATTATATTCTGAGTAGGTCTTGCCACGATCTCAGTCATAGTGGTAGTCACAGATGGAAAATTTTGTATCG-----------------------GATGTAGAAAA---------------
s cb4.chrX              8317536 199 + 21540570 ----------------attttggaagaagGAGTGATTTATGT---GGCTCCGCAACGTTTCACAAAtgcgacgtttcgaaagtaaCAGCTTTGCGCtttttttGCacagaaaaaacggaaaactttGTT-------TTCTAAGATTTAATCTAGTTT----------CTTGAGAAGTTCTGTGTCTTTTTAAGACTGCTTCCCACATTTACTTTCGAAACGTCTTACTTGTGAAA
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   411975  60 -  4500979 ------------------------------aataaattatgt-------------------------------------------------------------------------------------------------tcatattta----------------------------ttttgtgtCTGCTTAA-----------------ACTTTTATAAGG---CATTTaggaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   518637  56 - 33334924 ---------------------------------AGATGATAT-TCGATACCGATGCTTATCAT------------------------------------------------------------------------------GAACTTCGATCATGTT----------------------------------------------------ATTTTAGTATA---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1633962 143 +  4147112 -----atgtttttgtgaatctaatgaaaaaattaaatgaaac-tTGACTCTGCAAATAAACAT------------------------------------------TCAGGGAATAGGAAAGCGTTTGAA----------TAAAacttctttcagttt----------caaaaaaaatcaagggacATGAAAATTCGGTTG---------GTTTTAGGAAA---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   31218  40 +    47500 I

a score=-4471.000000
s ce10.chrX             3248241 17 + 17718866 TGGGAATGCGGAAAGTT----------------
s cb4.chrX              8317766 13 + 21540570 ----aatcagaaaattt----------------
i cb4.chrX              I 31 C 0
s caeSp111.Scaffold629   518693  3 - 33334924 --------------TTT----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634105 19 +  4147112 --------------CGTGTAACTACCGAAACTT
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold10737   31218 40 +    47500 I
e caeRem4.Crem_Contig0   412035  0 -  4500979 C

a score=-5975.000000
s ce10.chrX             3248258 92 + 17718866 -----------------CAAGTTCTAAAGATCACTGTGCCCCTACATAGCACCGAAAATGTATCATAAAGTTTTTATACAGTTTTTTCTCGATTACTAC-----CTATTATAAG
s cb4.chrX              8317779 93 + 21540570 aatattttaaagttttttaatttccaaaaatgaaactactgtgtttta---------------------atttttacgttttttttttccaaagaatGAAAACTTTAGTATGAT
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold629   518696 42 - 33334924 -----------------CAATGAACAGGAATAATGATCCAGGTAGCTA----------------------------------------CCAAGGATTGG---------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1634124 76 +  4147112 I
e caeJap4.Scaffold10737   31218 40 +    47500 I
e caeRem4.Crem_Contig0   412035  0 -  4500979 C

a score=-4728.000000
s ce10.chrX             3248350 31 + 17718866 AAACTAAAATA--ACAAAACAATAGATGCAAAA
s cb4.chrX              8317879 28 + 21540570 CAACAGAAATG--TCAAACCAATGGGCGCA---
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   412035  9 -  4500979 ---------------aaactaatt---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   518738 14 - 33334924 ----AGAAGGGAATAAAA---------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1634124 76 +  4147112 I
e caeJap4.Scaffold10737   31218 40 +    47500 I

a score=-8982.000000
s ce10.chrX             3248381 24 + 17718866 -----------TTACAAGAATTTTAATATAGAATT
s cb4.chrX              8317907 20 + 21540570 TATATCACATTTTTCACAAT---------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   412044 14 -  4500979 ----tctca--tttaaaaaT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   518752 16 - 33334924 -------------------TTACGGATGAGTGGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634200 24 +  4147112 -----------TTCCTAGATCTCCCATGTGTTGTT
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold10737   31218 40 +    47500 I

a score=-6104.000000
s ce10.chrX             3248405 38 + 17718866 CATGGTTTTGAAGGTAATTTCAAAATTTC-----AATGTTTCA------
s cb4.chrX              8317930 47 + 21540570 CGCAG--TTTGAGACCACCCTCcaattttagcaaaattttgaaatttca
i cb4.chrX              I 3 I 163
s caeSp111.Scaffold629   518768 35 - 33334924 -------TCAAAGGAAACTGGATAA-CTCATTAGAATGTATG--T----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634224 38 +  4147112 CATAG--TTCATTGAGACTTG-----CTCATTAGAGTATCTGATT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   31218 40 +    47500 I
e caeRem4.Crem_Contig0   412058  0 -  4500979 C

a score=-8265.000000
s ce10.chrX             3248443 175 + 17718866 CCCCGTACCAATAACTAACGAATTAACTGAGTTTGAGTAGTATTCTAGTATAAATGCCTAACTTCAGTTTTCTAATCTTTTTCAAATAATCCTTCCATATAAGTGAATAATGATACAAATTTACCAACATTGGCAGGTATTACACTTATATCATATCTTTTATAATTTTATCAGC
s caeSp111.Scaffold629   518803  57 - 33334924 AGCTTCATCA------GACAGAACAAATGTGTT------------------------TCAAC---------CTAATGTTTTCCAAATCACTC------------------------------ACCA-------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634262  79 +  4147112 TCCTTTACCGCTGAATGACCACAAAAACAAGTTAG----------------------AAAAC---------CCAGACACTCATGAATCATGC------------------------------ACAA----------------------------------CATGAGCTCACgag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   31218  40 +    47500 I
e cb4.chrX              8317977 163 + 21540570 I
e caeRem4.Crem_Contig0   412058   0 -  4500979 C

a score=0.000000
s ce10.chrX             3248618 4 + 17718866 AACC
e caePb3.Scfld02_0      1634341 0 +  4147112 C
e caeJap4.Scaffold10737   31218 40 +    47500 I
e cb4.chrX              8317977 163 + 21540570 I
e caeSp111.Scaffold629   518860 0 - 33334924 C
e caeRem4.Crem_Contig0   412058 0 -  4500979 C

a score=273.000000
s ce10.chrX             3248622 1 + 17718866 T
s cb4.chrX              8318140 1 + 21540570 T
i cb4.chrX              I 163 C 0
s caeRem4.Crem_Contig0   412058 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1634341 0 +  4147112 C
e caeJap4.Scaffold10737   31218 40 +    47500 I
e caeSp111.Scaffold629   518860 0 - 33334924 C

a score=92889.000000
s ce10.chrX             3248623 292 + 17718866 ACTATTTTGAATAGGGTTCCT-----GATTGCTTCA----------GAAATGGCTTGACCGGCTGGCTCCCAAAATCTTCCTGAA----------CAAAAACGCAGTTTTTTCTC---TTT---------TTTAACCAAAAAATAACTC-----ACCATTCCAGTGATGTTGTATCCCATTGATATTCTGGAAGTTTCTGGGATTTTGAAAttgttgttgctgttgaaaacgtggttgctgctgaaactgttgttgttgttgccatggtct------tt---------------------gttgGAAATTGTTCTGATTCTGTTGT---GGAAACTGTCGCTGGGCATTATTTTGAAACTGATT
s cb4.chrX              8318141 276 + 21540570 ACTGTTTTGAATTGGGTTTCT-----TATTGCTTCT----------CCAATTGCATGTCCTGCTGGTTCCCAGAATCTTCCTCAAATTGGTAGACTTTAAATGAAACATGCTACA---TTT---------CCC-----------TTCTT-----ACCATTCCAATGTTGTTGAACACCATTAAAACTCTGAAACGGTCTTGGATTCTGGAACTGTGGACG------------TGGCTGCTGGAACTGCTGTTGTTGTCCTTGCCAGGGTCTTTGAGGTT---------------------GTTGGAAA---TTCTGATTC---------GGACGTTGTTGTTGGAAATTGTTCTGGAAATTGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   412059 293 -  4500979 ACCGTTTTGAATGGGATTCCG-----AATTGCTTCC----------CCTATTGCTCGTCCAGCTGGCTCCCAGAATCTTCCTATAAAtagt----ttttagtattttttgctaaaagtttt---------cgctaaaattt--ttcatt-----accATTCCAATGTTGCTGACCACcgttaaaattttgaaacggtCTTGGGTTTTGGAACTGTGATTGC---TGAAACCTTGGCTGTTGAAATTGCTGTTGCTGCCCTTGCCATGGTCT------TT---------------------gttgaaag---ttttgattttgttggAAAGGACGTTGTTGC---AAATTATTTTGGATGTTATT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   518860 264 - 33334924 ----TTCTGTATGGGGTTTCT-----GATTGCTTCG----------CCAATGGCACGACCAGCTGGCTCCCAGAATCTacctgaaa---------tcaaaaacgtTCCCatctaa---ttt------------------tctatttttttgcaaacCGTTCCAATGTTGTTGGACACCATTAAGGTTCTGCAATGGTCTAGGATTCTGGAATTGTGGTTGC---TGGAACC---GTGGTTG---------TTGCTGTCCCTGCCATGGTCg------tt---------------------gttgaaaa---ttttgattctgttGG---GAAGGCCTTTGA---ACATTATTTTGGAAGTTGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634341 312 +  4147112 ----ctttgaaaaacttttctttttcaattatttcactCACCGTTTCCCACAGCGTTACTTACTGGTTCCCAGAATCTGCCTGAAAGT-------TCAAAGTTCTTTTGATTAAG---TCT---------CACTTATAATCAATATCTT-----ACCATTCCAATGTTGTTGTACtccgttgaaattttgaaatggtcTGGGATTTTGCAGCTGAGGTTGT---TGGAATCTAGGTGGCTGGAA------TTGTTGTTGCTGCCttggtgg------ttgaaactgttgttgaggtcttggttggata---ttttgattttggttt---tggtttcgttgg---aaattgttttgaaaattgtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   31258 272 +    47500 ACCGTTTTGAATAGGATTTGT-----GATCGCACTG----------GAAACAGCATGACCAATTGGCTCCCAGAATCTTCCTTAAACAA------gtcaattttatatttttcaa---tatgTAAGTACATATTCACAGTTTTATTCTC-----ACCATTCCAATGTTGTTGTACCccattgaaattttgaaatggtCTAGGATTTTGGAATTGAGAC------TGAGACTGAGGTTGTTGAAA---------CTGTTGCTGTCTAGGTCT------TTGAACTTgag------------gttgaaaa---ttttgattttgctGG---AAG------------CCATTATT------------
i caeJap4.Scaffold10737 I 40 C 0

a score=422.000000
s ce10.chrX             3248915 1 + 17718866 T
s cb4.chrX              8318417 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   519124 1 - 33334924 T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634653 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   31530 1 +    47500 C
i caeJap4.Scaffold10737 C 0 C 0
e caeRem4.Crem_Contig0   412352 1 -  4500979 I

a score=72437.000000
s ce10.chrX             3248916 83 + 17718866 GCTCTCTGTTGCGCCTGGAACCGGTTTCTCATTGCCTGGTTGTTGCGGAATTGGGTTCTTTGATTTTGTAA------TTGGTTTTGGTT
s cb4.chrX              8318418 80 + 21540570 GCTCTTTGCTGCGAATTGAACCGGTTTCGCATTGCTTGGTTGTTCCGAAATTGCGTTCTTTCGTTTTGTTT------TCGGTT---GTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   412353 80 -  4500979 GCTCTCTGCTGAGAGTTGAACCGGTTTCTCATTGCCTGGTTGTTCCGAAATTGCGTTCTTTGGTTTTGTAA------TTGGTT---GTT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   519125 80 - 33334924 GCTCTTTGCTGGGCGTTAAACCGGTTTCTCATTGCCTGGTTGTTCCGAAATTGCGTTCTTTGGTTTTGTAA------TTGGTT---GTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634654 80 +  4147112 gctctttgttgggcttggAACCTGTTCCTCTGTGCCTGATTGTTTCGGAATTGTGTTCTTTGGTTTTGTAA------TTGGTT---GTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   31531 83 +    47500 GCTCTTTGTTGGGTATTGAACCTGTTTCTCATCGCCTGGTTATTTCGGAATTGCATTCTTTGATTGTCCAACGCATTTTGATT------
i caeJap4.Scaffold10737 C 0 I 879

a score=27542.000000
s ce10.chrX             3248999 101 + 17718866 CTGCAACTTTTTTACGGAAATAAGGCAAAAATTCG---ATTTTTTTTGAAAAGTATACCTGATTAAAATTTCCCTGCCCTTGCATATTTTGTTGGTTTCTGTTG
s cb4.chrX              8318498  90 + 21540570 CTGTAG-----------AACAAAAAGTAACTTTTGGGAATTTGGTTT---TGGGTTACCTGATTAAAATTTCGTTGTCCTTGCATACTTTGTtggtttcttgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   412433  88 -  4500979 CTGTAA-----------A--TGATGCCAATAATTGCAAACTCGTTTT---TGCCATACCTGATTGAAATTTCGTTGTCCTTGcatattttgttgatttcttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   519205  92 - 33334924 CTGTaa-----------atatatattcaataattgaaaactagTTTCC-ACCTCCTACTTGATTGAAATTACGCTGCCCTTGCATATTTTGAGGGTTTCTCTGg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634734  91 +  4147112 CTGTAA-----------GggtattttcaataattgacTATTAGTTCCC--CATCCTACCTGATTGAAATTACGCTGTCCTTGCATATTTTGGGGGTTTCTCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   31614 879 +    47500 I

a score=45854.000000
s ce10.chrX             3249100 198 + 17718866 TTCTGATTTTGGTTCCG---------TGGACGATT---------------------AGGCGAATTTCCATTTTGgttattattattgttgttgttattgttattgttgttgttaCGATTGTTTTGTGGAATCTGAAAATGGTTTTTTTAAGCTTTTGTAAAAC-------TTTTCCC----------AT----------------CTATCCCACTGGTGGAGACGCGGAAGGGGGAGATCCATGATTGGAACGAGACCG-CG
s cb4.chrX              8318588 219 + 21540570 ttttgattttggttcTGATTCAGGTTTTG---GTTTCTGTTAGGGTTACGATTACCCGGAAAGTTTCCattattgttgttgttgttattgttattattg---ttattgttgtttcgattattttgAGGGATCTGTAACCAA-TTTGTGAagt-----caaaac-------ttgaaaa----------aattg-------------agatcttACTGGAGGAGATGCAGAAGGTGGAGATCCATGATTAGAGCGAGAACG-TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   412521 187 -  4500979 ttttggttctggttttga------ttttg---attacGGTTAGG------------CGTGGAGTTTCCA---------TTTCCATTCTGATTATTCTGA---TTATTGTTGTTTCTGTTATTTTGAGGCAcctgaataca------------------aaaaa-------tcgtatattttctttttatttg-------------aagCCTTACTGGAGGAGATGCTGAAGGAGGAGATCCTTGACTAGAACG---ACG-TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   519297 180 - 33334924 ttttgattctgatttcg---attgtttggagaatt------------------------gaaatttccattttgattgttttggttgttg---------------ttattgtttcggttgttttgtGGaatctgaagttt------tgaaat-----caaaat-------gcaaatg----------aattga------------agaacTCACAGGTGGAGATGCTGAAGGAGGAGATCCGTGATTAGAACGAGAACGATG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1634825 209 +  4147112 TTTTGATTCTGGTTTCGGTTGTTGTTTGGAGAATTCCCatttgggttatt------tggagaattgccattttgattattttggttgttgttgttc------ctattgttgtttcgattattttgAGGAATCTGAAac-----------aac-----gaaaattttttagttagGTT----------ATTT--------------CTAACCAACTGGAGGAGATGCGGACGGAGGAGATCCTTGACTAGAGCGAGAACG-TG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   32493 203 +    47500 ttaCGATTTTGGTTTGGATTACGATTCGA---ATTCCAATTAGGGTTCC---------------TTGAATTcaggttgttgttgttgttcagATTA------GCATTATTATTTTGGTTATTCAGCGGACTCTTCAAGCA-----------------GTAAAC-------ATATACT----------TTTTGAGCATTAAAAAAGAAAGCTTACAACAGGAGATGCAGATGGAGGAGACCCTTGTCCAGATCTAGTCTG-CG
i caeJap4.Scaffold10737 I 879 I 14

a score=-1662.000000
s ce10.chrX             3249298  8 + 17718866 GA------GAAGAT
s cb4.chrX              8318807 11 + 21540570 TATT---TGATTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   412708  8 -  4500979 TA------GATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   519477 10 - 33334924 TGGA----GATTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635034 14 +  4147112 TAGAAGACGATTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   32696 14 +    47500 I

a score=86551.000000
s ce10.chrX             3249306 200 + 17718866 GGGGAAATTGTACTTCGAAATTGTTGGCCAGCACTGATAAGACTTTGAATATAGGAAGGAACAATTGGAGGCGGGACCGGAGCAATAATTGGTCTGGCTAAATTATAACGTGGACAAAGATTAGGTTGAACTTGGTTTTGAGGTAGGGGAGATATTGAAGATCTGGAAAATT--------------------TTGATTATATCGT--CAATTCCCCACTCTA
s cb4.chrX              8318818 188 + 21540570 GGTGAAATTGAACTGCGGAATTGTTTTCCAGCATTGATTACACTTTGCATATAAGAGGGAACTATTGCGGGCGGAACAGGAGCAATCACTGGTTTAGGAAAGTTGTACCGTGGACATAAGCTAGGATTTAATTGTTGCTGAGGTAGTGGAGCAAtggaagatct--gaaatt--------------------ttg------------gattttttattcGTT
i cb4.chrX              C 0 I 773
s caeRem4.Crem_Contig0   412716 189 -  4500979 GAAGATATTGTACTTCTGAATTGCTTGCCAGCATTGATCACACTTTGAAGATAAGGGGGGACGACAGCAGGTGCAACTGGAGCAATAACCGGTTTGGGGAAATTATATCGTGGACACAACGCAGGATTGAGTTGTGTCTGAGGTAGAGGAGATATGGaggatct-ggaaaat--------------------ttg------------gagttttctcCAATT
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold629   519487 198 - 33334924 GCAGATATTGTACTACGGAATTGGCGGCCTGCATTTATCAGACTCTGAAGATATCCGGGAACGTTAGGAGGTGCAACCGGAACAATGGCAGGTCTAGGGAAATTAAAACGAGCGCATAGATTAGGTCTCAATTGTGATTGAGGTAGAGGAGAAATCGaagatct--gaaaga----------------------aaatagacTGCTCAAACTCATCATCGTC
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1635048 200 +  4147112 GGAGAAATTGTACTACGAAATTGGCGACCAGCACTTATCAAACTTTGAAGGTATCCGGGTATTGCGGCTGGAGCAACCGGAGCAATAACTGGCTTCGGGAAATTGTAACGCGGACATAAATTTGGATTAACTTGAGCTTGAGGTAGGACAGGGATTGAAgatct--gaaata--------------------ttgattatACAACGTGATTTCCGCATGATT
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold10737   32710 210 +    47500 GCTAATATTGTACTACGATATGATTTTCCGGCTGATATTAAACTTTGAAGGTACGTTGGAACTACTGGTGGAACAGCCGGTGAAGTCGCAGGGCGAGGAAAATTGTAGCGTGGGCATAGAGATGGgtttatttgattttgagGTAGAGGCGTTATAGATGACCT--AAAATTGTTCAATTAAtatattgaaattgaaaagaaagTCTCATTT----------
i caeJap4.Scaffold10737 I 14 C 0

a score=91530.000000
s ce10.chrX             3249506 117 + 17718866 ACCTGTAATTGGAAGGGATGAAGCCAAGAGCACCAAGTCTGTGATAAAGCAGAGAAAAGCATTGCATACATTCTTGAGATTGGCAAGAAAATGTATTACTGTTCTAAATAGAAAGGT--
s cb4.chrX              8319779 117 + 21540570 ACCTGTAACTAGAAGGTATGAAACCAAGATCGCCCAGTTTGTAATAAAGCAGAGAGAAACATTGCTGACATTCCGAACTGCGACAAGAGAATGTGTTgctgttctgaaaatgagaga--
i cb4.chrX              I 773 C 0
s caeRem4.Crem_Contig0   412930 117 -  4500979 ACCTGTAATCTGATGGTATGAAGCCAAGATCACCGAGTTTGTGATAAAGCAGGGAAAAACATTGCTGACATTCTTGTGTACGACATGAAAAAGTATTGctattctgaaatcaaaaat--
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold629   519690 117 - 33334924 ACCTATAATCCGAAGGAATAAAACCAAGATCACCAAGTTTATAATAAAGCAGAGAAAAACATTGCTGACATTCTTGAGTACGGCATGAAAATGTGTTACTATTCTGAAAGGAACAAA--
i caeSp111.Scaffold629  I 5 I 2
s caePb3.Scfld02_0      1635259 117 +  4147112 ACCTGTAATCTGAAGGAATGAAACCAAGATTATCAAGTTTACGATAAAGCAGGGAGTAACATTGCTGACATTCTTGAGTTCGACAGGAAAACGTGTTActgttctgcaaaaaaaagt--
i caePb3.Scfld02_0      I 11 I 35
s caeJap4.Scaffold10737   32920 119 +    47500 GCCTGTAAGAAGATGGTATAAATCCAAGGCCTGAAAGTTTATTGTATAAAAGGGAAAAACATTGCTGACACTCTTGATTTGTACATGAGAAGGTATTACTGTTCtgtaaaaaaacaact
i caeJap4.Scaffold10737 C 0 C 0

a score=-9055.000000
s ce10.chrX             3249623 28 + 17718866 TTTCGTTCGTACTGGAAGCTTA----------------------TCGAGC
s cb4.chrX              8319896 26 + 21540570 --tgACCCTGAGGTAAAATCTA----------------------TCGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413047 13 -  4500979 --t----------tgaaat-------------------------tttatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   519809 15 - 33334924 -------------TAACATCTA----------------------TAGTGT
i caeSp111.Scaffold629  I 2 C 0
s caeJap4.Scaffold10737   33039 39 +    47500 -----------tttcaaGTTTATACTGgcggaccgccaaaatggtcgaac
i caeJap4.Scaffold10737 C 0 I 128
e caePb3.Scfld02_0      1635376 35 +  4147112 I

a score=910.000000
s ce10.chrX             3249651 1 + 17718866 T
s cb4.chrX              8319922 1 + 21540570 T
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   413060 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold629   519824 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 10
s caeJap4.Scaffold10737   33206 1 +    47500 t
i caeJap4.Scaffold10737 I 128 C 0
e caePb3.Scfld02_0      1635376 35 +  4147112 I

a score=133990.000000
s ce10.chrX             3249652 150 + 17718866 AAACTTACAATTAAAGGAGCTGCATTGTTGC--TATGTTTTGTCAGATCTAGAAAGGATAAAATTGCTTCTTCATAGTTTACAGCAATATATCGAGAATCATAAGATATGCATTGTTGCGATTGTGGATGAATCACGCAAGGACACTGAAA------------------A
s cb4.chrX              8319928 168 + 21540570 AAACTTACAATCAGAGGGGCAACATTACTAC--TGTGTTTCGAAAGATCAAGAAAAGATAAGATCGCCTCTTCGTAGTTGACAGCAACGTAGCGGGAATCATAAGAGATGCATTGTTGTGAGTCCGGGTGAATTACACAAGGGCACTGAAAGTATGAGTTTTGCATGGta
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   413073 150 -  4500979 AAACTTACAATTAAAGGCGCAGTATTAGTGC--TGTGTTTCGATAAATCGAGAAAAGATAAAATTGCCTCTTCATAGTTAACTGCGATGTAACGTGAGTCGTATGATATACATTGTTGAGATTCAGGATGAATCACGCAGggacactgaaa------------------a
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold629   519835 153 - 33334924 AAACTTACAATTAACGGTGCAGCGTTACTGC--TGTGTTTCGATAGATcgagaaaagataaaattgCCTCTTCGTAGTTGACGGCGATGTAACGAGAATCATATGAAATGCATTGTTGAGATTCCGGATGAATCACACAAGGACACTGAAT---------------TATA
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1635411 153 +  4147112 AAACTTACAATTAGAGGGGCAACGTTACTGC--TATGTTTGGAAAGATCGAGGAAGGATAAGATCGCCTCTTCATAGTTGACAGCAATATAACGGGAATCATATGAGATGCACTGTTGAGAGTCTGGGTGAATCACACAAGGGCACTGAAA---------------CGGA
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold10737   33207 150 +    47500 gaactcaCAATTAGAGGAGC--CGGTAATGCATGATGTTTCGACAGGTCAAGAAACGATAAAATTGCTTCTTCATAATTGACTGCAATATATCGAGAATCGTATGAAATACACTGTCGAGATTCCGGATGTATCACACATGGGCACTAAAG------------------A
i caeJap4.Scaffold10737 C 0 I 41

a score=-29274.000000
s ce10.chrX             3249802 105 + 17718866 ATTGAAATACTACACGTGAAAAGCGCCGGTGGCTTTTTCAAACCAAAACATAGTTTAAAATTGGAAGCATGCTGCTAGGATTTAACT---AGGTTTTGCAATTTTTGC
s cb4.chrX              8320096  85 + 21540570 gtgaaaatttta---attgaaagATCGAG------TCGGACATTC---TCAGGTTTCGGGGC---------CTGGTAAGCCtggattcaaaaaagttgtaaaaagT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413223  17 -  4500979 atggaaattt----------------------------------------------------------------------ctagatt---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   519988  16 - 33334924 AACAA-----------TTGAAGTCACG---------------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635564  85 +  4147112 AAgaatattt-----cttgaaacagcaGT------ATTAAAATTTATGCAAAGTTTCAATCT---------AGCCTTTGACTTAACT---ATAATTCGTCAATCTTTC
i caePb3.Scfld02_0      C 0 I 61
e caeJap4.Scaffold10737   33357  41 +    47500 I

a score=-14167.000000
s ce10.chrX             3249907 86 + 17718866 GATTGAAATTTT------ATGATTTGTTGGTCTGCTAAATATTTGGGTCTGCT---AAACATTTTGGGTCTGCTGATTGTTTTCTTAAACAATTA----
s cb4.chrX              8320181 90 + 21540570 -------ATTGTTAAACAATtctttgcaaattttcaaaacaaacatTTCTTTTATAAACTGTtttatattt--cgaaaatctttttgaaaagacaagta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413240 33 -  4500979 --------ttat------------------cTCTCAAAAACGACATTTCCctt----------------------------------------caaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520004 22 - 33334924 --TGctcacttt------------------ttctcagaatat---------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1635649 61 +  4147112 I
e caeJap4.Scaffold10737   33357 41 +    47500 I

a score=-31913.000000
s ce10.chrX             3249993 100 + 17718866 AGAAACGTTTAATTGAAAA--------------------TCCATCAA--------------AATCTTGGAGTGAAATATGAGTTCAACTCTCCTCCACGGGAAAATTTTTTGCAAATTTTTTCGTCCCAAAAAA
s cb4.chrX              8320271 122 + 21540570 --aaacattt--ctgaaaacccggACCGGGTCGAGAAAGTTCTGCAAAAGCCCAGCCCGGCAAGTATGGAAGAAAGTCtgaat--aaaatgtttcaa------atctatttccagatttttgtgGCTTATATTA
i cb4.chrX              C 0 I 107
s caeRem4.Crem_Contig0   413273  31 -  4500979 --aactactt--tt-------------------------ttctatgA---------------------GAAG--------------------------------------TGCAGATTC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520026  39 - 33334924 ---------------------------------------tccttcaa---------------------tatt------------------ttttcaa--gaatacttttttttaatttc---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635710  55 +  4147112 ---------------AGAAACGGAA--AATCAAACACAGTCTTTCAA---------------------GA----------------------TTCAA--GTTGAGCTCCgttc--tttc---------------
i caePb3.Scfld02_0      I 61 C 0
e caeJap4.Scaffold10737   33357  41 +    47500 I

a score=-5652.000000
s ce10.chrX             3250093 58 + 17718866 AAAGAAAAAAAAACCAAAATAAAAATTTTGAATTTTTGGGGGAATTGATATGGtaaaa
s caeRem4.Crem_Contig0   413304 20 -  4500979 --------------------------ACCTTGAATTCAAG------------GTAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520065 36 - 33334924 --------aaaaacttttataaaaattccCGGTTTTCAAG--------------GAAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635765 33 +  4147112 --------aaaa--ttgaattga---tcCTTTTTGTTATG------------CTAAAC
i caePb3.Scfld02_0      C 0 I 77
e caeJap4.Scaffold10737   33357 41 +    47500 I
e cb4.chrX              8320393 107 + 21540570 I

a score=-1650.000000
s ce10.chrX             3250151 27 + 17718866 aataattttaatgtaaataaaaactaa
s caeRem4.Crem_Contig0   413324  7 -  4500979 --CCATTGT------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520101  7 - 33334924 AATAATT--------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1635798 77 +  4147112 I
e caeJap4.Scaffold10737   33357 41 +    47500 I
e cb4.chrX              8320393 107 + 21540570 I

a score=-7836.000000
s ce10.chrX             3250178 59 + 17718866 aaaaataGGTGTTCAAATTTGCACTTTTTCACATTATGCATCATTTTTTTTCCTTCTAC
s cb4.chrX              8320500 55 + 21540570 AAGAAT-AACGTTTTAA--GAAACTCATtaatattttg-ataatttttttttctatgac
i cb4.chrX              I 107 C 0
s caeRem4.Crem_Contig0   413331  7 -  4500979 -----------------------Ctcttt-----------------------------c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520108 15 - 33334924 -------ACcgttgaa-------cttttt------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1635798 77 +  4147112 I
e caeJap4.Scaffold10737   33357 41 +    47500 I

a score=-15641.000000
s ce10.chrX             3250237 103 + 17718866 TAATTTGTATTCTGATTGTGAAAATGTTTAAAATA-----------------------------ATTTCTACCGTGTGACGAAAACATG-----CTAAACAACTTGAGA-CATTAAATCAAGAACTTAAGAACAAC--AC
s cb4.chrX              8320555  92 + 21540570 ---------------------gaacattcgaaaaaaaaccccaaatttcatctttcaaaaaatctgttcGTTC-TGTGACGTA-----------ACAGCC-TCTTGAAA-TATA--------TAT---GTAGTATT--GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413338  80 -  4500979 ---------------------gaactttttgaaaa-----------------------------tgttcagta-TGTGACGTAAGAAAG---ATACAGTCAACTTCAAA-TATAACCTTAAGGAC---ATAACAAT--CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520123  66 - 33334924 ------------gaatc----ga-------------------------------------------CTACAAT-TATGACGCAG--AAA---GTACAATCAACTCGAGACTGTA------AGGTC---AAGATTATGAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635875  95 +  4147112 TGAACTTTGttcaaatt----gaacttttgaaaat-----------------------------agttcCGTC-TGTGACGTAACCAAATTGGCAGAGTCAACTTGAAACTATA------AGGTC---GAAACACT--AA
i caePb3.Scfld02_0      I 77 C 0
e caeJap4.Scaffold10737   33357  41 +    47500 I

a score=117662.000000
s ce10.chrX             3250340 204 + 17718866 AA-GTTTACCTGCTGAATTTTATTTCCTCGTGTCTTTTGTCGAACGACATCTTGAAAAACATCGTTGGTTGCCTGCCGTTTCACAGTATGGCCACTTGAAAAAACGATGAA---AA-TTGAAAA-----GATGAGCACAACAAGCCTCATCTACATTTACAGTTGTTTCCAAACAGATTTG--TGCTGAAAAATG------TTTTTTTT-----TATTTCAAAGAAA
s cb4.chrX              8320647 189 + 21540570 A--AAGTACCTGTTGAATTTTATTTCCTCGTGTCTTTTGTCGAACCACGTCTTGGAAGACTTCATTTGTCACTTGCCGTTTTGCCACGTGTGCTTTGGAGAGAACAATGAG---AACTGAGCAACAGATGATGAGCACCACAAGCCTCATCTACATTTACAACAG-TTGCAGACGAATATTAGTACTGAAAAAAG--------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413418 193 -  4500979 AATATATACCTGTTGAATTTTATTTCCTCGTGTTTTCTGACGAACGACATCTTGAAAAACTGTACGTGATGCctgtcttttttcaatatgacCATTGGagagaacaacaaa---aa-tgagaaa-----aatgagcacaacAAGCCTCATCTACATTTACAACAG-TTCCGGACAGATTTT--CACTGAAAGAAAGGAAT-TTGCG---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520189 209 - 33334924 AA-TCTTACCTGctgaattttatttcctcGTGTTTTCTGTCTAACGACATCTTGAAATACTTCATTCGTCGCTTGCCGTTTGACAATATGACCGTGCAAAAGAAcaatgaa---aa-cgagaaa-----aatgagcaCCACAAGCCTCATCTACATTTACAACAG-TTCCCGACAGATTTT--aactgaaaagagagacgATTGAGGAT-----GACTCTAGACGAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1635970 185 +  4147112 AA-GTATACCTGTTGAATTTTATTTCCTCGTGTTTTCTGTCGAACGACATCTTGAAAAATGTCATTCGTCGCCTGCCGTTTCACAATATGACCACTTGAAAGAACGATGAA---AA-CGAGATA-----GATGAGCACAACAAGCCTCATCTACATTTACAACAG-TTCCAGACagatttt--cactgaaaat--------ttgag---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   33398 207 +    47500 AA-TCTTACTTGCTGAATTTGGTTTCCTCTAGTTTTCTGACGCACCACATCCTGAAAGGCATCGTTTGCTGCTTGCCGTTTTGCAACATGAGCGCAAGAAAGAAAGATTGAGCTGA-TGCTGAA-----GATGAGC---GCAAGCTTCATCTACATTTACAACGA--TCCCAATGTATATT--CTCTGAAAACCA------TTCTTCGCACTGATATTCCAAAGCAA
i caeJap4.Scaffold10737 I 41 I 1208

a score=-88653.000000
s ce10.chrX             3250544 439 + 17718866 ACGAAAAATTTTGTAGGACAAGAAAATACGACGTTTACTGACTGTCTAGTGCATTAATCTATGACCTAGTAAAAGTTAAAGTTAACTCTCACAATTTCAGTATTCTAGTCATGAATTAGTGATACAAAAAATGTATCCAAAAAATATATCCAGTTCTTACTGGATAACAATTATTCTAGAAGCGACTTTTTTAGAAACATCTACAAAAAATGAAGGATGAAATATCAAAGATTAATGTAAAAGAAGATAACGGTAATAGGTTCTTAAGGTCAAAACACAGGTTCCTTATCCGAAAGTGTAAAGCAGA-----------AAATAAATAATTGAACAAGTCTTGAACCGCTTTTTGTGATTTCTTCTCATGACTAGTGTAAGGATGTAGTGCCCAAGGACATACACAACCATACAATAATGAC---------TTGATAACG----GATGA-----------AAAAAGTTTTA---AAAT
s cb4.chrX              8320836 179 + 21540570 --------------------------------------------------------AACTATTTCAGTGAAA-GGTCAGA-------------------------------------------AAACGAGGTTCATG--------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGGTGTAACAAAAT-----------GAGAAGATG---GAACTTGTCTTGCATGGTT--------------TCTATGATTTGTTCTACAGACGA---------AAAATTAGCAAGGACAGATGAGTAAC---------TGGAAGACTAGGCGGTTAGACAAAGAAGgatggaaaacagaaaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   413611 215 -  4500979 -----------TGAGGGAAAAGCA-------------------------------TAGATATTGTAGTGCAATGGTCAAA-------------------------------------------ACACGAGATTCACGGAGAAAAGA-------------------------------AGGTGTAA------------------------------CATGATGTAGTAAGAAGTGTTGGAACTAGTCGTCTCG--AACAGTTTTTCTATG----------ATTTCTACATGAGACAAGGCGAGAAAGT-----------AAGCATCAA---GGACT---CCTGCAT--------------------------------------------------AAAAC-----------GATGAGTAAC---------TGAAAA---GGGCGATTC-----------ATTCAATACTG---AGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520398 211 - 33334924 ACTA-------TGAATACAAATGA-------------------------------ATCGTGTTCTTCAGCAAAGGTCAAA-------------------------------------------GCATAGATTTCATC-----AGGG-------------------------------AAGTGTAA-TGAAACAGAGTGACtaccgaaaaaaatacaacAGGTCTTGGATAGTTTTTATGACTTTTCATG-------AGGATTC-----------------------------AAAGTAAAACGAAGC--------------------------------------------------------TTCAAGGACAATCAAA---------------------------------ATGAGTAAT---------TGGTGGAAGTTTGCACTA-----------TATTGACAGTA---GATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1636155 247 +  4147112 ------------------------------------------------------------attttttagaaaaagcttct-------------------------------------------acaaaaatt----------aggt-------------------------------agacggaa-------------------gaaaaaataaaaattgttctttGACAAAGGTCAGAACAC-------------AGGTTTCACT-------------------------GAAAGTGTAATGAGACATGGGGGTATCTTGCGAGTG---AAACTAGTCTAGAACGGTTTTTTGCGGG---TTTTTAGGGTAAgtcagaaaaatga---------agcatCAAGGACAGAGGATGAGTAACAATAGTGGGTTGTGAATGATGTGAATG-----------TTTTAAATGTG---ATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   33605 1208 +    47500 I

a score=24284.000000
s ce10.chrX             3250983 64 + 17718866 GGAATATTCAGCGAAT-ATAAAC----AGGCCATCAGTTTGCTTCAAAAACTGTTCGCCTAACATTTC-A
s cb4.chrX              8321015 66 + 21540570 ttaatatttagCGAATCTTCGAA-AATATGACATCAAGTTG--TTTGGAACTGTTCGCCTAACATTTT-A
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   413826 67 -  4500979 AAAATATTCAGCGAATATCAGAGTGGGATGACATCAAGTTG--TTTGGAACTGTTCGCCCAACGTTTA-T
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold629   520609 62 - 33334924 GGAATATTCAgcgaat-ttaaaa----atgacatCAAGTTG--TTTGGAACTGTTCGCCCAACGTTTT-T
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0      1636402 62 +  4147112 GGAATATTCAGCGAA--TCAAAA----ATA--CTTGAGTTGCTTTTGGAACTGTTCGCCTAACGTTTTGT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold10737   34813 59 +    47500 GGATTACTCAGCAAAT-AAAGAT----ATGACTTCACTTCA--AAGGCTAATGTTCGCCAAACGAT----
i caeJap4.Scaffold10737 I 1208 C 0

a score=-4514.000000
s ce10.chrX             3251047 30 + 17718866 ACCAAAATCAATGCTGTTTATTTTTTTATT------
s caeRem4.Crem_Contig0   413905 18 -  4500979 AGAAAG---AAAACCGTTTAG---------------
i caeRem4.Crem_Contig0  I 12 I 10
s caeSp111.Scaffold629   520677 18 - 33334924 TCCaaa---aaaaCCGTTTAG---------------
i caeSp111.Scaffold629  I 6 I 10
s caePb3.Scfld02_0      1636470 18 +  4147112 TCCTAA---AAAACGGTTTAG---------------
i caePb3.Scfld02_0      I 6 I 10
s caeJap4.Scaffold10737   34872 17 +    47500 ----------GTTCTGTTCTT---------TCTACA
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8321081 53 + 21540570 I

a score=160530.000000
s ce10.chrX             3251077 248 + 17718866 ---------------TCATTC-CAATCTTCGGTGTTTTCCAACA-----CCGACAAAAAAGACGGAAGGAG---TG-------ACGGCACTTTGAAGGTGAAGCGTAAGTTCAAGTGACAGCAAGAATTAATTTTCATTACTATAGATGGGCGATGATCGGAC--GAAAAACTGGAATT--A--------------------CGTACACTTTGCAACAGCTTGTA----ATGTGTGCGTGTGTGTGTAATTTGGTAAAGCGAATATGTTTCAATTGGG----TTTCGGATAG--TCTGTGAAA-----------T----ATGAACATG
s cb4.chrX              8321134 266 + 21540570 ---------------tcattccattttttc-----------acgCCTTTCCGCCAAAACGACCCCAATGAG---TG-----AAAAGGCACTTCGAAGATGAAGCGTTAGTTCAAGTGACG----------TCTCTCATTACTATAGAT----GATGATCAGGCTTTTGAAACTGGAATT--ACACATACACAACACACCTACCATGCGCTTTGCAACGGCTTGTT----TTGC----GGGTGTGTGTAATTTGGTAAAGCGAATATGTTTCAATTGGGGCTTTTTTGAATGGGAGatgtgaaaaaatagaaaatt----gagaacatG
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   413933 229 -  4500979 ---------------TCATCATTAATATTC-----------ACA-----CCGCCAAAA-GGCCATAATGAG---TG-------GAGGCACTTTGGAGATGAAGCGTAAGTTCAAGTGACAgcaagaat--tttttcattactATAGATGGGCGATGATCAGAC---CGAAACTGGAATT--A--------------------CATACACTTTGCAACGGCTTGTC----ATGT------GTGTGTGTAATTTGGTAAAGCGAATATGTTTCAATTGGG---TTTTTGGATGG--GCTGTGAAA-----------T----AAGAACATG
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629   520705 228 - 33334924 ---------------TCactattcattttc-----------aca-----CCGTCAAAA-GACCATAATGAG---TG-------AAGGCACTTTGAAGATGAAGCTTAAGTTCAAGTGACGGCAAGAA---TTTCTCATTACTATAGATGGGCGATGATCAGAC----GAAACTGGAAATACA--------------------CACACACTTTGCAACGGCTTGTA----ATGT------GTGTGTGTAATTTGGTAAAGCGAATATGTTTCAATTGGG----TTTTGGATGG--GCTGTGAAA-----------T----AAGAACATG
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1636498 228 +  4147112 ---------------tcatca-tcattttc-----------aca-----cCGCCAAAA-GACCATAATGAG---TG-------AAGGCACTTTGAAGATGAAGCGTAAGTTCAAGTGACGGCAAGAA---TTTCTCATTACTATAGATGGGCGATGATCAGAC----GAAACTGGAATT--A--------------------CACACACTTTGCAACGGCTTGTcatgtatgt------gtgtgtgtaaTTTGGTAAAGCGAATATGTTTCAATTGGG-----TTTGGATGG--GCTGTGAAA-----------T----AAGAACATG
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold10737   34889 244 +    47500 TCAAACTATGTATAATCTCCA-TTGTTTTC-----------ACA-----CCGCCCGTA-AACCTCAATTAGAtttgaaacgaaacgaaacgatgAAGATGAAGCGTAAGGTTAAGTGAAGGCACGGC---ATTCTCATTACTATAGACAAACGATGATTACAC----AGAACTGGAATT--C----------------------CACACTTTGCAACGCGTTGTC----ATGT----------GTGTAATTTGGTaa--caaaaatgtttc-attAGG-----TTTGGATGG--GCAGTGAAA-----------TCAAAAAGAACATG
i caeJap4.Scaffold10737 C 0 I 1104

a score=-4319.000000
s ce10.chrX             3251325 23 + 17718866 TCGGGAAGGGCAGAAAACATGTC
s cb4.chrX              8321400  2 + 21540570 TC---------------------
i cb4.chrX              C 0 I 128
s caeRem4.Crem_Contig0   414162  8 -  4500979 TTG----GCGCA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520933  8 - 33334924 ACG----GCGCA-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1636726  8 +  4147112 TCG----GCGCA-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I

a score=5200.000000
s ce10.chrX             3251348 33 + 17718866 TTTCACGCCTATAGGTGTTTTCAAAATTG--------AAAA
s caeRem4.Crem_Contig0   414170 24 -  4500979 TTTCACGTCTG-----GTTTCCGAAAATG------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   520941 32 - 33334924 TTTAACGTCTG-----GTTTCCGAAAATGGTTAAAAA----
i caeSp111.Scaffold629  C 0 I 50
s caePb3.Scfld02_0      1636734 24 +  4147112 TTTTACGTCTG-----GTTTCCGAAATTG------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e cb4.chrX              8321402 128 + 21540570 I

a score=83.000000
s ce10.chrX             3251381 43 + 17718866 CCATAAGACATTCAAAACTAAACGAAAATTGGGGAAATGTTCT
s caeRem4.Crem_Contig0   414194 25 -  4500979 --GTTAGACAT------------Gacgtttca----ataattt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1636758 27 +  4147112 --GTTAGACAT------------GCCGTTTCG--atataattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e cb4.chrX              8321402 128 + 21540570 I
e caeSp111.Scaffold629   520973 50 - 33334924 I

a score=1233.000000
s ce10.chrX             3251424 61 + 17718866 CTTTTTTAAATA---AAGTATATAAA------------GTACGATTAAAAGTTA------AACTAGTCGAATTGTCTAAATT----------
s caeRem4.Crem_Contig0   414219 84 -  4500979 gtttttcaaaaaaggaagatgatAGATGGTCGAATTTTGTATAATAAAACGTTACGG---CGCCAGacgaga-----aaatggaaagaataG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   521023 54 - 33334924 ----------------------------------ttttgtaaaatgaaACGTTACGTTGCCGTCAGACGAAA----GAAGTGGGAAGAAAAG
i caeSp111.Scaffold629  I 50 C 0
s caePb3.Scfld02_0      1636785 84 +  4147112 gtttttcaaaaa---aagatgatagaTGGTCAAAATCTGTAAAAGGAAACGTTACGAAGTCGGCAgacgaga----aaaatgaaaag-aaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e cb4.chrX              8321402 128 + 21540570 I

a score=73856.000000
s ce10.chrX             3251485 190 + 17718866 GGTAAACACTTCAAATTGGTT-TGTACTT-------GTA-------------GGGTAAAAATTAG-AAAAGTAGAAACGAC------CACACAGTAATAGCAAGTCATGCAAAAATCTGATGAACATG---TC--GTTTCCA--TCTTTGTCTCTTCTTGATACTTTGATCAATTCGCAACCTTGAAATGTCTACAGCACTTATGTTCTTCACTGCATCAAAATC-
s cb4.chrX              8321530 196 + 21540570 GGTAAACACTTCAGC---GTTTTGTACTTCTAATTGGTA-------------GTCGAGagtttgcaaaaatttgagacGACCACACATACACGGTCAT-----GTCAGA-AAAATTGTG-AGAACacagtttcaattttct---tcgttGTCTCTTCTTGATACTTTGATTCA---ACAACCTTGAAATGTCTGCAGCACTCATATTcttga-atcttgaaaaatt
i cb4.chrX              I 128 C 0
s caeRem4.Crem_Contig0   414303 173 -  4500979 GGTAAACACTTCAGTTCGGTTCTGTACTT-------GTA-------------Gggtgaaaattgc-aaaattggAGAC-------CACACACAGTAAT-----GTCAAACAAAAACCTG-TGAACACAGTTTC--TTCTCtatctttttgtttcatctTGATACTTTGATCCA---ACAACCTTGAAATGTCTGCATCACTTATGTTCTTGA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   521077 177 - 33334924 GGTAAACACTTCAAATTGGTTCTGTACTT-------GTA----------------CAAAAATTGC-AAATTTGAAGAC---------CACACAGTAAT-----GTCAAACAGAAACTTG-TGAACACAGGCCC--TCCTCTa--tctttgtttcttcttgatACTTTGATTCA---ATAACCTTGAAATGTCTACGGCA--TATGTTCTTGACATCATCAAAGTC-
i caeSp111.Scaffold629  C 0 I 320
s caePb3.Scfld02_0      1636869 191 +  4147112 ggtaAACACTTCAGATTGGGTCTGTACTT-------GTAAAGGGAATCTGTCGAGAAGAACTTGC-AAATTTGGAGAC---------CACACAGTCAT-----GTCAAACAAAAACTTG-TGAACACAGTTTT--TACCCTG--TCTTTGTTTCTTCTTGATACTTTGATCCA---ATAACCTTGAAATGTCTACGGCACTCATGTTCTTGACATCATCAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I

a score=-65687.000000
s ce10.chrX             3251675 579 + 17718866  
s cb4.chrX              8321726 407 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   414476 286 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1637060 378 +  4147112  
i caePb3.Scfld02_0      C 0 I 79
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e caeSp111.Scaffold629   521254 320 - 33334924 I

a score=-3646.000000
s ce10.chrX             3252254 90 + 17718866 taatatttggtcacggtggtgccatgtacactttttaaagcaatttaaa---aatcgcactggcgct------actc------tacTACCTTTGATGGATTAATC
s cb4.chrX              8322133 91 + 21540570 aaagatttgATTTTGTTGTTGGCA-----ACTTTTTAGTACGAATTCATCCGAATAAGATAGGCCTTTAG--AACTT------TGAACTTCTTACTATTCCTgt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   414762 89 -  4500979 agaaattttactttgtAGTTCTC----------------ACAACTCAAAACGAGTATAACTCATTCTCAGGAAACTCTACTCATGATCAATTTGCTAGTCCAATC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1637438 79 +  4147112 I
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e caeSp111.Scaffold629   521254 320 - 33334924 I

a score=-9894.000000
s ce10.chrX             3252344 68 + 17718866 ATAGGGTTAAC-----ACATGAAAAACTATTCTATTGCTAT----TACTATTCTTAGTTTAAGACATATTTTTTCAA-
s cb4.chrX              8322224 40 + 21540570 ----------------actt--------------tttgaca----tcttgg---TGGTTTTAAGCAATATTCCTTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   414851 60 -  4500979 ---AAAGAAACAAC--ACGTAAG---------AATCAGAAA----TCATAGACTTTGGATAAGGAAATGCTATTTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1637517 74 +  4147112 ATTAGGTAAACAACTGAATTAGGTTTGTTTCCAATAAAACAAGTTTGTTAG---TGGTATGAGAAGTTTTGTTTCAG-
i caePb3.Scfld02_0      I 79 I 13
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e caeSp111.Scaffold629   521254 320 - 33334924 I

a score=-3000.000000
s ce10.chrX             3252412 54 + 17718866 GCTTGAAATTCCAAGAATCCAAAAGTCTTATTATGTAAAAAAACGATTGCAG---AA
s cb4.chrX              8322264 47 + 21540570 ----TTGATTAttcg--tacaaaaaagttgataactacaaa----attgaagttctg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   414911 41 -  4500979 ----GCAATTTCACT--TCCGGAACTATAAATGAC----------Atgtaagtttat
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1637591 13 +  4147112 I
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e caeSp111.Scaffold629   521254 320 - 33334924 I

a score=-14769.000000
s ce10.chrX             3252466 164 + 17718866 TTTTTGAAATTATTAATAAAATTTGATTGGATATTTT-------------------ACCTTATTTTTCTGAATGTTAAAGTTGTCCAAATTTTTAAAACCTTTTTTT--TAAATCCTAATACATATCATCTTTTTCAGATCCCAATACATTTCATG-----ACAACTGCCAAAATTGACATCGTTATTTA-
s cb4.chrX              8322311 152 + 21540570 tttttgt-----ttagtaaatctgaaatgtat-ttttttcatttgctGCTCTGTATAGCCAAGCTTCTTGGTCATCAGCATTTCCCAGTTTTGTCCAAAATTCTATCTTCAAATCTT-----------CCCACTTTA------AAACAGCTTCATTGGGGGAAAAAACT---------------TATTTT-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   414952 128 -  4500979 tttttgt-------------------atgtcTACTTTTTAGagtgattttctgaaaaccctcgattttttattgttaG--------AGATGGCTCGCACATTCCGtgaaaaaatctt-----------tcagaTTCACAT--CAAGTAGTTTCATT-----ATAAAA-----------------TATCTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1637604 113 +  4147112 ---------------------------------TTTTCATAGCTGATAATC-----ACACTCAATTCTTTTTGA--GGCACCTGCAAgttattgc----attttttc--aaaatctg-----------tctTTCTTCGTT--TAAATAACTTCATT-----ATAAATATC--------------CATCTTG
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I
e caeSp111.Scaffold629   521254 320 - 33334924 I

a score=30489.000000
s ce10.chrX             3252630 89 + 17718866 ---CATCTTAATAATTCCCTCCGGAAAACTGATT--------------CATCTTCAAACTCTTCACATAATCTTATGTGGCGTGACACACACATTT-CTTTCCTCAT
s cb4.chrX              8322464 87 + 21540570 CGTCTTGTTTATAATTCCATCCGTAAAACGT-----------------CCTCTTCA---TCTTCATATAATCTTATATGGCGTGACacacacattttttcttcccat
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   415080 97 -  4500979 CATCTTGTTTGTAATTCTTTCCGGAAAAcgtagttttctttttctctgcatcttca---tcttcatatAATCTCGTATGTCGTGACAGAA-------TTCTCCTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   521574 78 - 33334924 ---cattttctaaatgttttccgaaaaacctcatctcctt--------catttt-----------cataatctTATGTGGCGTGAcatat-------ttcttctcat
i caeSp111.Scaffold629  I 320 C 0
s caePb3.Scfld02_0      1637717 82 +  4147112 -------TTAATAATTCTTTCCGGAAAACgtctttctctt--------catcttca---tcttcacatAATCTTATGTGGCGTGACACAT-------TTCTTCTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   35133 1104 +    47500 I

a score=184031.000000
s ce10.chrX             3252719 432 + 17718866  
s cb4.chrX              8322551 433 + 21540570  
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   415177 444 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold629   521652 442 - 33334924  
i caeSp111.Scaffold629  C 0 I 39
s caePb3.Scfld02_0      1637799 438 +  4147112  
i caePb3.Scfld02_0      C 0 I 69
s caeJap4.Scaffold10737   36237 401 +    47500  
i caeJap4.Scaffold10737 I 1104 C 0

a score=-14527.000000
s ce10.chrX             3253151 21 + 17718866 ---------------------------------TGAAAGATGT--------------------GCTGTAATACC-------------
s cb4.chrX              8323000 12 + 21540570 ---------------------------------taCA-----------------------------GTACAACC-------------
i cb4.chrX              I 16 I 23
s caeRem4.Crem_Contig0   415659 19 -  4500979 ---------------------------------TACATGATTT----------------------TGTAAAACC-------------
i caeRem4.Crem_Contig0  I 38 I 40
s caeSp111.Scaffold629   522133  3 - 33334924 ---------------------------------TCC---------------------------------------------------
i caeSp111.Scaffold629  I 39 I 4
s caeJap4.Scaffold10737   36638 87 +    47500 CGAGATGCGTGTTTCGTTATTTCGGAAGctttttaaaagaaataatAGACAGAAAAAGGGCCAACGATATCACCCTCtacagtggtt
i caeJap4.Scaffold10737 C 0 C 0
e caePb3.Scfld02_0      1638237 69 +  4147112 I

a score=231104.000000
s ce10.chrX             3253172 262 + 17718866 TCTTT----TTTCAGGTGTGGACGACGACTCATTCAACACATTCTTCTCGGAAACGATGGCTGGCAAGCATGTACCACGCGCTATAATGGTCGATTTGGAGCCGACCCCGATTGGTAAGAAG------------CG-------GGAGTGTTGAGCAATTATGTGGGAGACTAGTAGCGGTGCGCGCGTGCTTGACAAAG-------------------CAATTGTGCATGCGGAAAACGATCATTGTCTTGATTGATGCTC-TAC-----CCTTCAAATGGTGTCGATTATAAAGCTATTGGAAGCGATT
s cb4.chrX              8323035 281 + 21540570 --TTT---ATTTCAGGAGTAGAAGACGACTCATTCAATACATTCTTCTCTGAAACGATGGCTGGCAAGCATGTGCCACGTGCGATAATGGTGGATTTGGAGCCGACCCCAATTGGTAAGAATTGCGGCAACGACAGCCAAAAGAGAGTGTCGAGCAATTATGTAC-------------GCGCGTGCTTGCTTGACAAAGGCCTTTTGGTAGTGGGCCCAAATTGTGCATGCGGAAAACGATCATTGTCTTGATTGATGCTC-TA------TAT----ATGGTGTCGATTATGAAGCTATTAAGAACAATT
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   415718 277 -  4500979 ACTGT---ATTTCAGGAGTGGATGATGATTCTTTCAACACGTTTTTCTCGGAAACGATGGCAGGCAAACATGTACCACGCGCTATAATGGTCGATTTGGAGCCGACCCCAATTGGTAAGAAT------------GGCCAAAA-AGAGTGTTGAGCAATTATGGGA-----CAGCAGCGGTGCGCGCATACTTGACAAAGACCTTTT-GCAGTAA----AAATTGCGCATGCGGAAAACGATCATTGTCTTGATTGATGCTC-TA------TATTCAAATGGTGTCGATTATATAGCTATTGAGAGCAATT
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold629   522140 275 - 33334924 TCTTT---ATTTCAGGTGTGGAAGACGATTCTttcaacacatttttctcgGAAACGATGGCTGGAAAACACGTGCCACGTGCTATTATGGTGGATTTAGAGCCGACCCCAATCGGTAAGAAT------------GCCCAAAA-AGTGTGTTGAGCAATTATGTGT--------TGGCGGTGCGCGTGTGCTTGACAAAGCCCTTTC-GCAGCAA----AAATTGGGCATGCGGAAAACGATCATTGTCTCGATTGATGCTCATA------TATTCAAATGGTGTCGATTATAAGGCTATTGGAAGCGATT
i caeSp111.Scaffold629  I 4 C 0
s caePb3.Scfld02_0      1638306 284 +  4147112 tctttcaaattccagGTGTCGAGGATGATTCCTTCAACACATTCTTCTCGGAAACGATGGCTGGAAAGCATGTGCCACGTGCTATTATGGTGGATTTGGAGCCTACCCCAATTGGTAAGAAT------------GCCCAAAA-AGAGTGTTGAGCAATTACGTCC--------TGGCGGCGCGCGCATGCTTGACAAAGACCTTTT-GCAGTAA----AAATTGGGCATGCGGAAAACGATCATTGTCTTGATTGATGCTCATATATATGTATTCAAATGGTGTCGATTATAAGGCTATTTGAACCGATT
i caePb3.Scfld02_0      I 69 C 0
s caeJap4.Scaffold10737   36725 245 +    47500 -tttt---tttccaggagtCGAGGACGACTCGTTTAACACGTTTTTCTCGGAAACGATGGCCGGAAAACATGTGCCACGCGCTATAATGGTGGATTTGGAGCCGACCCCAATTGGTAAGAAT------------GG-------AGAGTGTTGTGCAATTATGTGT-----------------GCGCATTTTTGCCGCAAAC-----------------GAATTGTGCTTACGGAAAACGATCATTGTCTCGATACATTCTC--A------GACTTGAATGGTGTCGATTATAAAGCTATTAAAAGCAATT
i caeJap4.Scaffold10737 C 0 I 72

a score=4621.000000
s ce10.chrX             3253434 22 + 17718866 CGAGCGTGTTGTGTAGAACGGA
s cb4.chrX              8323316 19 + 21540570 GGAGCGT---GTGTTTTGGGGG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   415995 20 -  4500979 GAAGCGTA--GTGTAATACGGA
i caeRem4.Crem_Contig0  C 0 I 228
s caeSp111.Scaffold629   522415 20 - 33334924 GAAGCGTA--TTCAGGAGCGGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1638590 20 +  4147112 GAGGCGTA--GTGTAGAACGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   36970 72 +    47500 I

a score=-1197.000000
s ce10.chrX             3253456 5 + 17718866 AGAGT--
s cb4.chrX              8323338 4 + 21540570 ATAG---
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold629   522435 5 - 33334924 --AGTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1638610 5 +  4147112 --AGTGT
i caePb3.Scfld02_0      C 0 I 261
e caeJap4.Scaffold10737   36970 72 +    47500 I
e caeRem4.Crem_Contig0   416015 228 -  4500979 I

a score=1114.000000
s ce10.chrX             3253461 7 + 17718866 TTAGGAA
s cb4.chrX              8323342 7 + 21540570 GTAGGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   522440 7 - 33334924 GTACGAA
i caeSp111.Scaffold629  C 0 I 204
e caePb3.Scfld02_0      1638615 261 +  4147112 I
e caeJap4.Scaffold10737   36970 72 +    47500 I
e caeRem4.Crem_Contig0   416015 228 -  4500979 I

a score=114.000000
s ce10.chrX             3253468 24 + 17718866 CTTTCAAAGTGTGAATAGTACGAG
s cb4.chrX              8323349 17 + 21540570 C-------GGAAGATTAGTATGAG
i cb4.chrX              C 0 I 1362
e caePb3.Scfld02_0      1638615 261 +  4147112 I
e caeJap4.Scaffold10737   36970 72 +    47500 I
e caeSp111.Scaffold629   522447 204 - 33334924 I
e caeRem4.Crem_Contig0   416015 228 -  4500979 I

a score=0.000000
s ce10.chrX             3253492 748 + 17718866  
e caePb3.Scfld02_0      1638615 261 +  4147112 I
e caeJap4.Scaffold10737   36970  72 +    47500 I
e cb4.chrX              8323366 1362 + 21540570 I
e caeSp111.Scaffold629   522447 204 - 33334924 I
e caeRem4.Crem_Contig0   416015 228 -  4500979 I

a score=91.000000
s ce10.chrX             3254240 1 + 17718866 T
s caeSp111.Scaffold629   522651 1 - 33334924 T
i caeSp111.Scaffold629  I 204 C 0
e caePb3.Scfld02_0      1638615 261 +  4147112 I
e caeJap4.Scaffold10737   36970 72 +    47500 I
e cb4.chrX              8323366 1362 + 21540570 I
e caeRem4.Crem_Contig0   416015 228 -  4500979 I

a score=-2093.000000
s ce10.chrX             3254241 33 + 17718866 GAT-----------------------TCATAT-CTATAATCATCCTGTCCAGACTGT
s caeRem4.Crem_Contig0   416243 21 -  4500979 GAT-----------------------GTATAC-GTACAATCATCC------------
i caeRem4.Crem_Contig0  I 228 C 0
s caeSp111.Scaffold629   522652 43 - 33334924 GATTCATTTCTCCGTTCCTGTATTTAGTATGCTGTACGAACAT--------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1638615 261 +  4147112 I
e caeJap4.Scaffold10737   36970 72 +    47500 I
e cb4.chrX              8323366 1362 + 21540570 I

a score=194.000000
s ce10.chrX             3254274 26 + 17718866 ATAATCATTTTAACTA--TCTTGTCTAC----
s caeRem4.Crem_Contig0   416264 21 -  4500979 -----CATGTCTGCTA--TCACAACTGC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   522695 32 - 33334924 GTTATCATTTCAACTGCTTTATGACGACATAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1638876 31 +  4147112 ACAATCGTTTCAACTATATTGCATCCAC-TAG
i caePb3.Scfld02_0      I 261 C 0
e caeJap4.Scaffold10737   36970 72 +    47500 I
e cb4.chrX              8323366 1362 + 21540570 I

a score=3750.000000
s ce10.chrX             3254300 8 + 17718866 ACTGTCAT
s cb4.chrX              8324728 8 + 21540570 ACTATCAT
i cb4.chrX              I 1362 C 0
s caeRem4.Crem_Contig0   416285 8 -  4500979 CATATAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   522727 8 - 33334924 TCTATCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1638907 8 +  4147112 TCTATCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   36970 72 +    47500 I

a score=608924.000000
s ce10.chrX             3254308 696 + 17718866  
s cb4.chrX              8324736 752 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   416293 745 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold629   522735 736 - 33334924  
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1638915 740 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold10737   37042 744 +    47500  
i caeJap4.Scaffold10737 I 72 I 4

a score=-9918.000000
s ce10.chrX             3255004 29 + 17718866 --TTCAGA-----GAAGGCTGGT---------CTAATTGCTATAG
s cb4.chrX              8325491 35 + 21540570 --ttcaaaaattctgaaaattatttgatgtttttaat--------
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold629   523478 27 - 33334924 --TTTTAa-----tgatgatttc-----atttctaacCT------
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1639660 27 +  4147112 --tataaaaagt-TGAGAATTCC---------CAAATTG------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold10737   37790 27 +    47500 CTTTGCAA-----TGGGAAGTTT----GAGCCTTGA---------
i caeJap4.Scaffold10737 I 4 C 0
e caeRem4.Crem_Contig0   417038 33 -  4500979 I

a score=94414.000000
s ce10.chrX             3255033 85 + 17718866 TTAAGGTTGCTGAAATCACCCAACAATGTTTCGAGCCAGGAGCGCAAATGGTCAAATGTGATCCAAGAAGAGGAAAATATATGGT
s cb4.chrX              8325526 85 + 21540570 tttaggtCGCTGAAATCACTCAACAGTGTTTCGAACCAGGAGCGCAAATGGTGAAATGTGACCCGAGAAGAGGAAAATACATGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417071 85 -  4500979 TTTAGGTCGCCGAAATCACTCAACAATGTTTTGAGCCTGGAGCTCAGATGGTCAAGTGTGACCCAAGAAGAGGAAAATACATGGT
i caeRem4.Crem_Contig0  I 33 I 43
s caeSp111.Scaffold629   523505 85 - 33334924 TTTAGGTTGCTGAAATCACTCAACAATGCTTTGAGCCTGGAGCTCAGATGGTAAAGTGCGATCCGCGGAGAGGAAAATACATGGT
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1639687 85 +  4147112 TTTAGGTTGCTGAAATCACTCAACAATGTTTTGAACCAGGAGCACAAATGGTGAAATGCGACCcaagaagaggaaaatatATGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   37817 85 +    47500 TTCAGGTGGCAGAAATCACGCAACAATGTTTTGAACCTGGTGCGCAAATGGTGAAGTGTGACCCAAGGCGAGGAAAATATAtggt
i caeJap4.Scaffold10737 C 0 C 0

a score=-26.000000
s ce10.chrX             3255118 5 + 17718866 GAATT
s cb4.chrX              8325611 5 + 21540570 GATAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1639772 2 +  4147112 ---AT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold10737   37902 5 +    47500 gcatt
i caeJap4.Scaffold10737 C 0 C 0
e caeSp111.Scaffold629   523590 3 - 33334924 I
e caeRem4.Crem_Contig0   417156 43 -  4500979 I

a score=-253.000000
s ce10.chrX             3255123 5 + 17718866 TATTT--
s cb4.chrX              8325616 5 + 21540570 AATTT--
i cb4.chrX              C 0 I 30
s caeJap4.Scaffold10737   37907 5 +    47500 --ttttt
i caeJap4.Scaffold10737 C 0 I 31
e caePb3.Scfld02_0      1639774 5 +  4147112 I
e caeSp111.Scaffold629   523590 3 - 33334924 I
e caeRem4.Crem_Contig0   417156 43 -  4500979 I

a score=0.000000
s ce10.chrX             3255128 429 + 17718866 CGCATATGGCACATAAAAAACATTCCAAATGAATTGCCAAGTTTCTGACAGAAAGTTGATACTGTGTAAAAAAGTTGATGCTAATAGTAAGCTCAGAGAACAGTTTTTCCTATTGTGCCAAAATGACCAAATTTTTTCTAACAATTTTTATTCCGTTTCAAAATGTGGTCTCACTTTTTTTGAAAGTCGTGTTTTTTTGGAAGAACCTACGTTTCAAATATTAATATTAAAGCATTGTAGGGGTTCTCAAAATGTGCCAAAAACTCAGTAATTACCACTTTCAAAAAATTTTTTGTAAATTGATACTTGCCACCGGATGGCAAATTAACATTTGACCCTAATAAAATATAAGAATATTGAAAATACAAAACCCGATCTCAATTAGAAACAGTATTCAATTTCAGGATAAATTTCAACAAAGTTACAACA
e caePb3.Scfld02_0      1639774   5 +  4147112 I
e caeJap4.Scaffold10737   37912  31 +    47500 I
e cb4.chrX              8325621  30 + 21540570 I
e caeSp111.Scaffold629   523590   3 - 33334924 I
e caeRem4.Crem_Contig0   417156  43 -  4500979 I

a score=447.000000
s ce10.chrX             3255557 12 + 17718866 ATCCATTTTTTG
s caeSp111.Scaffold629   523593 12 - 33334924 ATTCACTTAGTG
i caeSp111.Scaffold629  I 3 C 0
e caePb3.Scfld02_0      1639774  5 +  4147112 I
e caeJap4.Scaffold10737   37912 31 +    47500 I
e cb4.chrX              8325621 30 + 21540570 I
e caeRem4.Crem_Contig0   417156 43 -  4500979 I

a score=-914.000000
s ce10.chrX             3255569 27 + 17718866 CAATTCGGCC-CCGTTATCTAACTTTGT
s caeSp111.Scaffold629   523605 20 - 33334924 CAGTTCTTGTgtaattgttt--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1639779 24 +  4147112 CAATTCTGGT-TCACTGTTTA---TAAT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold10737   37912 31 +    47500 I
e cb4.chrX              8325621 30 + 21540570 I
e caeRem4.Crem_Contig0   417156 43 -  4500979 I

a score=-2405.000000
s ce10.chrX             3255596 4 + 17718866 TTAA---
s caeRem4.Crem_Contig0   417199 4 -  4500979 ---TCAA
i caeRem4.Crem_Contig0  I 43 C 0
s caeSp111.Scaffold629   523625 3 - 33334924 -tct---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1639803 4 +  4147112 CCAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   37912 31 +    47500 I
e cb4.chrX              8325621 30 + 21540570 I

a score=129602.000000
s ce10.chrX             3255600 160 + 17718866 TTGCAGGCTTGCTGTTTACTGTACAGAGGAGATGTAGTTCCGAAAGACGTCAACGCTGCAATTGCATCAGTTAAAACAAAACGTTCGATTCAATTTGTCGACTGGTGCCCAACAGGATTCAAGGTTACCT---------CTTTTTCCATTCTTCACGTTTTCGATTTCA
s cb4.chrX              8325651 161 + 21540570 TTTCAGGCTTGCTGCCTTCTTTTCCGTGGAGATGTAGTTCCAAAAGACGTCAACGCTGCCATCGCTTCAGTGAAGACAAAACGTTCAATCCAATTTGTCGATTGGTGTCCGACTGGATTCAAGGTGACTTTttaaatcactttttcttatcatcTTGTGTT--------
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   417203 154 -  4500979 TTCCAGGCGTGTTGCCTTCTCTTCCGCGGAGACGTAGTGCCAAAAGATGTGAATGCTGCAATTGCATCAGTGAAAACGAAACGTTCAATCCAATTTGTCGATTGGTGCCCAACCGGATTCAAGGTTACTTTC-------ATTGTTCTTATCaacttatttc--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   523628 153 - 33334924 gttcaGGCGTGTTGTCTTCTCTTCCGTGGAGATGTAGTTCCGAAAGATGTGAATGCTGCAATCGCATCAGTTAAAACGAAACGCTCAATCCAATTTGTCGACTGGTGTCCAACTGGATTCAAGGttgttt--------cctcttctctatcatcttctttt--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1639807 161 +  4147112 TTTTAGGCATGTTGCCTCCTTTTCCGCGGAGATGTTGTTCCAAAGGATGTAAATGCTGCAATCGCATCAGTGAAGACAAAACGCTCAATCCAATTTGTCGATTGGTGCCCAACCGGATTCAAggttattttcattttccttttttcttatcatcttatttt--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   37943 160 +    47500 TTTCAGGCATGTTGTCTTCTGTATCGTGGAGATGTAGTTCCAAAAGATGTTAACGCAGCAATTGCATCGGTGAAAACTAAACGTTCCATTCAATTTGTGGACTGGTGCCCGACCGGATTTAAGGTTCAATTTGtggccgtttttttttgttgcgatgtca---------
i caeJap4.Scaffold10737 I 31 I 801

a score=-1078.000000
s ce10.chrX             3255760 14 + 17718866 TAGT-----TTTTCTT--ATC
s cb4.chrX              8325812 10 + 21540570 --GT-----TTCCTTC----C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417357 14 -  4500979 --tt-----ttttctctcatc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   523781 17 - 33334924 --ttcctcgtttCCCA--ATC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1639968 12 +  4147112 --at-----ttaCCTT--ATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   38103 801 +    47500 I

a score=207279.000000
s ce10.chrX             3255774 205 + 17718866 TTTGCCCA--TTTTGCCACAAA--TCACAAA----TCTACAGGTCGGCATCAACTACCAACCTCCAACTGTGGTCCCTGGTGCTGATCTCTCAAAGCTCCAACGCGCTGTGTGCATGCTCTCCAACACAACAGCTATCGCAGAGGCATGGGCTCGTCTTGATCACAAGTTTGATTTGATGTACGCGAAGAGAGCATTTGTTCACTGGTGAG-TC
s cb4.chrX              8325822 197 + 21540570 TCAA----------ATCACAAA--TCACAAA----CCTACAGGTTGGCATCAACTATCAACCACCAACTGTGGTCCCTGGTGCGGATCTCGCGAAACTTCAACGAGCCGTGTGCATGCTCTCAAACACAACAGCCATCGCCGAAGCATGGGCTCGTCTCGATCACAAGTTTGATTTGATGTACGCCAAGAGAGCATTTGTTCATTGGTGAG-TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417371 197 -  4500979 acAA----------ATCACAAA--TCACAAA----TCTACAGGTCGGCATCAACTACCAGCCGCCAACTGTGGTCCCTGGCGCGGATCTCGCTAAACTACAACGTGCTGTTTGTATGTTATCCAACACAACAGCCATCGCCGAGGCATGGGCTCGTCTTGATCACAAGTTTGACTTGATGTATGCGAAGAGAGCATTTGTTCATTGGTTAG-TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   523798 198 - 33334924 ACTA----------ATCACAAA--TCACAAA----TCTACAGGTCGGCATCAATTATCAGCCGCCAACTGTGGTCCCTGGCGCCGACCTCGCTAAACTGCAGCGTGCTGTGTGTATGCTTTCAAACACAACAGCCATCGCCGAGGCTTGGGCTCGTCTTGATCACAAGTTTGATTTGATGTATGCGAAGAGAGCATTCGTTCATTGGTGAGCCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1639980 197 +  4147112 ACGA----------ATCACAAA--TCACAAA----TCTACAGGTCGGCATCAACTATCAACCACCAACTGTGGTCCCTGGTGCTGACCTAGCTAAACTACAACGTGCTGTGTGCATGCTCTCAAACACAACAGCAATTGCTGAGGCATGGGCTCGTCTTGATCACAAGTTTGATTTGATGTATGCCAAGAGAGCATTTGTTCATTGGTGAG-TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   38904 209 +    47500 ----TTCACCTGTGATGACAAAATTAATAAAGCATTTTCCAGGTCGGCATCAACTATCAACCGCCAACTGTGGTCCCGGGCGCTGATCTCTCAAAACTACATCGAGCCGTGTGCATGCTTTCAAACACAACGGCTATTGCTGAGGCATGGGCACGTCTTGATCACAAGTTTGATTTAATGTACGCCAAGAGAGCATTTGTTCACTGGTTGG-TT
i caeJap4.Scaffold10737 I 801 I 43

a score=910.000000
s ce10.chrX             3255979 1 + 17718866 A
s cb4.chrX              8326019 1 + 21540570 a
i cb4.chrX              C 0 I 65
s caeRem4.Crem_Contig0   417568 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold629   523996 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640177 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   39113 43 +    47500 I

a score=-1300.000000
s ce10.chrX             3255980 28 + 17718866 ACGCATCTGGCAATCGGGCGTTTTTTAA
s caeSp111.Scaffold629   523997 15 - 33334924 GAA-----GATAACTAG--------TGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640178 15 +  4147112 GAA-----GAAAATTAG--------AGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   39113 43 +    47500 I
e cb4.chrX              8326020 65 + 21540570 I
e caeRem4.Crem_Contig0   417569 47 -  4500979 I

a score=-2275.000000
s ce10.chrX             3256008 12 + 17718866 TTTA--TTTTTTTG----
s cb4.chrX              8326085 12 + 21540570 TCTATGTTCTTT------
i cb4.chrX              I 65 C 0
s caeSp111.Scaffold629   524012 12 - 33334924 ------TTCATTTCGAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640193 12 +  4147112 ------tctgattggaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   39113 43 +    47500 I
e caeRem4.Crem_Contig0   417569 47 -  4500979 I

a score=-2649.000000
s ce10.chrX             3256020 2 + 17718866 -------GA
s cb4.chrX              8326097 2 + 21540570 -------TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417616 2 -  4500979 -------GT
i caeRem4.Crem_Contig0  I 47 C 0
s caeSp111.Scaffold629   524024 9 - 33334924 AATGTGTGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640205 7 +  4147112 aa--agtgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   39113 43 +    47500 I

a score=120376.000000
s ce10.chrX             3256022 174 + 17718866 TTTTAGGTATGTTGGTGAGGGCATGGAGGAAGGAGAATTTAGCGAGGCGAGAGAGGATTTAGCAGCATTGGAAAAAGACTATGAAGAAGTTGGACTGGATGC---AGGAGAA---CCTGATGAGGAGGATGATTACAGTCATTATTG-AGGAAGCTTACTTACAAATTG------CAATATTAGAAA--------
s cb4.chrX              8326099 169 + 21540570 CTTCAGGTATGTCGGAGAAGGAATGGAAGAAGGAGAGTTTAGCGAGGCTCGAGAGGATTTAGCTGCGTTGGAAAAGGACTACGAAGAAGTTGGGTTGGATGC---AGGAGAG---CCAGACGAGGAGGATGATTACAGTCATTATTG-----AGAATATTTTTATGATA------TTG-GTAAAAAA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417618 158 -  4500979 CTTCAGGTATGTTGGCGAAGGAATGGAAGAAGGAGAGTTCAGTGAGGCAAGAGAAGATTTGGCCGCTTTGGAGAAAGATTATGAAGAAGTTGGATTGGATGC---TGGGGAA---CCTGATGAAGAAGACGATTATAGTCAT-----------AGCCAttattaaaata------tt------aaaa--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   524033 169 - 33334924 CTTAAGGTATGTCGGAGAGGGaatggaagaaggagagTTTAGTGAGGCTCGAGAAGATTTGGCTGCTCTCGAGAAAGATTATGAGGAAGTTGGATTGGATGC---TGGAGAA---ccagatgaagaagatgattaTAGTCATTACTA-----GAACAAACAACAAGTTT------TAA-ATTGAATA--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640212 176 +  4147112 ctTAAGGTATGTTGGAGAGGGAATGGAAGAAGGAGAGTTTAGTGAAGCACGAGAGGACTTAGCAGCTTTGGAGAAAGACTATGAGGAGGTTGGATTGGATGC---AGGAGACCATCCAGATGAAGACGACGATTATGGACATTATT-------GAGAAATGACAAATTGGGAACATGA-ATTAAATC--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   39156 185 +    47500 TTGTAGGTATGTGGGTGAAGGAATGGAGGAAGGAGAATTCAGTGAGGCAAGAGAAGACTTGGCAGCCCTGGAAAAAGATTATGAAGAAGTTGGATTGGATGCCGGAGGAGAA---CCGGATGAGGAAGATGCTTACAGTCAATACTAGACAGAAtcgttttgttattta------ttg-attgaaaatCTAGAAA
i caeJap4.Scaffold10737 I 43 I 2405

a score=-22225.000000
s ce10.chrX             3256196 73 + 17718866 TGATGTT-----------------TGACAAATATAAATATTAAAACTTTGAAATCAAACATAAATATTTAAATCTAAAGTTCAATTGGAT
s cb4.chrX              8326268 73 + 21540570 CA----TTATAGTGAATTGTATGGaaaaaaaTGCGAAG-----GACTTTATTGt----cgtgaaattttaaatttaa----agcTTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417776 26 -  4500979 ta----t---------------------------------------------------------aTTCAACATTTAA---CCACTCGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   524202 11 - 33334924 TA----T-----------------AGAGGAAT----------------------------------------------------------
i caeSp111.Scaffold629  C 0 I 21
s caePb3.Scfld02_0      1640388 29 +  4147112 CA---CT-----------------AGAGAAACGTAATT-----AAATTCAATGG------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   39341 2405 +    47500 I

a score=-9730.000000
s ce10.chrX             3256269 49 + 17718866 TTTTCAGTACTTTTTCAAGCTGTGTAAGATAGTGTAAGTGTAAG--------ATAAT---
s cb4.chrX              8326341 49 + 21540570 -tg-tagagtttttt-------tttcaaataaattatttctAGGGAAAATCTTCAata--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   417802 26 -  4500979 -tgatagaa-----------------aaatatatta----------------cCAATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1640417 15 +  4147112 --------------------------CAATAACTT-----------------TTAAAG--
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold10737   39341 2405 +    47500 I
e caeSp111.Scaffold629   524213 21 - 33334924 I

a score=-69908.000000
s ce10.chrX             3256318 259 + 17718866 ATGATGTTGCAAAAAACATTCTAAGTATAACTGGAATTCAATGTTATAGAATAAACGTACAGAGTTTGTACATATCATGAATA-----------------CAAAAAC------------------TCTATTTTGTAATACTGTCGCGCTCATGGAAACCATTCAAATTGGAATTCCAAGGAGAA---TTATCATCAATGGAAAAATTATTAAAAATGCAGACTTACCAATAAAAAACAGGGCAA-----AAGAAACAGTGAAAAAAAT------------------------------------TCGAATTTTAGTAA-------------------------------TTT-TTTGAAAATG--TTCTAAA---------
s cb4.chrX              8326390 308 + 21540570 --tttactgaaaaaaaagtttgtactAGAATTGT--TCCAAGAAGAcggaaaaagttttcagatttcatacAGTTTATGTATT-----------------CTAAACTACCAAGATTTTCCACAtgtatttt-------------------------------cagg------ttacaaaCAATATTGTGATTCTTGATAATAAATTCtgttaaaaaaataagtttttgtttgaagactaaaaaatatatattaaGTGGCagagatattttttttcaaattgaatttgatttttcaaatttctcattga-----aattaaatttactttatttttaatattttcattaaaatt-ttgaaattcaagttttaaa---------
i cb4.chrX              C 0 I 172
s caeRem4.Crem_Contig0   417828 136 -  4500979 ACTTCgttgaaaacaaa-----taataaaCTTGG--TTTGAAA-----------------------CGTACATTTTATTTAAA-----------------GTGGAAT-----------------------------------------------------------------TCACAAAGAAGA----------------------------------------------TGTAAACCAATAAG-----AGTAACCAGCAG-------------------------------------------CTGA-----GGTGA-----------------------TcccaaaaattgttaaaaaccA--TTTGAAA---------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   524234 129 - 33334924 -------------ATGATCTCgtaaaatactttt--ttcaata------aacaaaTACACAAGAGCCACacagatttttgatatatatatatCTGAGAATGCggatt------------------t------------------------------------caga------tttcaataaat-----------------------------------------------------------------------------------------------------------------------------------gtta-------------------------------ttt-ttcga-------TATAAAGATGAGCCA-
i caeSp111.Scaffold629  I 21 C 0
s caePb3.Scfld02_0      1640433 139 +  4147112 -------------acatttttgtaa-----tttt--ttcgata------ataaa---------------------TCATgtta-----------------gttgatt------------------tttttt-------------------atgga-------CAGA----ACTgttaaaaaact------------------------------------------------gaatcaaatCAT-----CGTAAAAGATCGGAACGCT------------------------------------TCCA-----GGTGA-------------------------------ATT-TTAGACTC----TCAGAGAATAAGCTAG
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold10737   39341 2405 +    47500 I

a score=-14653.000000
s ce10.chrX             3256577 114 + 17718866 CCGGTCCTTTTACGAAAATTGTATTGTTCAGCGACTTTCGGTTTTTCCAG-----GTGTCTAATC-GTTCCTTTTCTATTCGTTTTATTTATACGTTTCAGCACCACATTTCCGTATTCT
s caeRem4.Crem_Contig0   417968  55 -  4500979 CTGTTCATATT---------------------------------CACTAGAATTTACACGTGAACATTGCTCCTTTTtgtctttattt--------------------------------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   524363  64 - 33334924 ---GTTATATTA--AATGTT------------------------CTATGGAGGATGGATACAA---ATACAATATTTGTTCAGGATTTC------------------------CCATTCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640572  95 +  4147112 TCTGTTATAACA--AAGCCTTTAATAGTAA------------TTTTACAAAGAATGAAACTAATCCGTATCATTTTTAATCAACATATCTAGA-----------AACGTTTCTTTATTCT
i caePb3.Scfld02_0      C 0 I 163
e caeJap4.Scaffold10737   39341 2405 +    47500 I
e cb4.chrX              8326698 172 + 21540570 I

a score=-1487.000000
s ce10.chrX             3256691 37 + 17718866 TCCATTTTTTCAAAGACAAATTTGCAGGAATACCCTT
s caeRem4.Crem_Contig0   418023 37 -  4500979 ttgatattttcaaacaacaCTTCGCAGAGCAACGTTT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   524427  5 - 33334924 --------------------TCCAC------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1640667 163 +  4147112 I
e caeJap4.Scaffold10737   39341 2405 +    47500 I
e cb4.chrX              8326698 172 + 21540570 I

a score=-24430.000000
s ce10.chrX             3256728 142 + 17718866 GGTTTTTGTAA------TCTTTTAGAAATACATTTAGCTTTTGGAATGCGGATTTTTTTC----------------------------------TTCATATTATCGTTTCCCCCGTTCCACAGTTTTCTGTTTGATCAGCTTTCTCCAGCCTCA-GTTTTCAATTTTTATTTCTAACCTCTAA------
s cb4.chrX              8326870 173 + 21540570 GGTTT------------TCTTCagataaaaattccaaaatttttgtttcagagttttttcATATAGATTCATAGATCCAAAGATTTTCCCTTTCCACACACGACCGTTAGAGATGGACGAGTTTTATTTGTTCAGGATTTTCCCAATCATGccatattttcaatttccagt----aCTTCCACACCAAA
i cb4.chrX              I 172 C 0
s caeRem4.Crem_Contig0   418061  93 -  4500979 GATGTAAGCATGCACCGTCCTGggattaaaattgaaa----tctgtT-----ATTTGTTC-----------------------------------------------------------AGTTTTGTCTGTTCATTGAATTCCCTTTGAAG-CACATTTT---------------------------GG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   524432  36 - 33334924 ----------------------------------------------------------------------------------------------------------------------AATATCTCTCTTTATGTTGAGCTCCGTGTCATGAAA-----------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1640667 163 +  4147112 I
e caeJap4.Scaffold10737   39341 2405 +    47500 I

a score=21454.000000
s ce10.chrX             3256870 76 + 17718866 CCGTCATAAATCAATTGTATGTAGTTGCTACTTCTGTGTGCTAAC--CAAATGTATTATCAGTTTTCTCCGACCGTTC
s cb4.chrX              8327043 69 + 21540570 CTGTTATAAATTATTAG--------TGCTCCCATCA-ACCTTGCTTACTCCTTGATTATCAATTTTCTCCGATTTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   418154 74 -  4500979 TTGTCATAAATCAATAGTAT-TAACTGCTACCTTCA-GCGTAAACAACTTCcc--ttatcaattttctccGATATTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   524468 74 - 33334924 TTGTCATAAATCAATATAAT-TAAATGCTACTTTTC-GCGTAAAC-AC-AGTTTGTTATCAGTTTTCTCCGATAAATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640830 75 +  4147112 CTGTCATAAATCAATAGAAT-TATGTGCTACTTTTA-GCGTAAAC-ACAAAttaattatcaattttctccGATATTTT
i caePb3.Scfld02_0      I 163 C 0
e caeJap4.Scaffold10737   39341 2405 +    47500 I

a score=381614.000000
s ce10.chrX             3256946 1208 + 17718866  
s cb4.chrX              8327112 1197 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   418228 1239 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold629   524542 1190 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1640905 1237 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   41746 1169 +    47500  
i caeJap4.Scaffold10737 I 2405 C 0

a score=-9864.000000
s ce10.chrX             3258154 28 + 17718866 GCCATTTTCAAAAATTGCATGAT---------CTCAC-
s cb4.chrX              8328309 20 + 21540570 --------aaaaaattttgtgtc---------ttctc-
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold629   525732 22 - 33334924 ---------ggcAATTCcgattcaaa------ttcaa-
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1642142 26 +  4147112 ---------ACAGTTTtcgatttgaac--tttttgga-
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold10737   42915 28 +    47500 ----------acaattttcattcaccccttcttttaaa
i caeJap4.Scaffold10737 C 0 C 0
e caeRem4.Crem_Contig0   419467 30 -  4500979 I

a score=18185.000000
s ce10.chrX             3258182 41 + 17718866 -AAAAAA------AAACGAATGAACAGATG---GAGGTCAAACATCG----------AAAG
s cb4.chrX              8328336 50 + 21540570 -cataaattttccaaatcatTGAACATTATCTGCTGATCAAACATTG----------GGAG
i cb4.chrX              I 7 I 2
s caeRem4.Crem_Contig0   419497 51 -  4500979 -aacaaa------aaacgaatgaaCGGAAT---CCGATCAAACATTGAAGGACACGCGGAA
i caeRem4.Crem_Contig0  I 30 I 2
s caeSp111.Scaffold629   525759 41 - 33334924 -aacaaa------aaataaaagaacgGCTA---GCGATCAAACATTG----------ATAG
i caeSp111.Scaffold629  I 5 I 48
s caePb3.Scfld02_0      1642173 40 +  4147112 -aacaaa------aaa-gattgaacGGCTA---GCGATCAAACATTG----------ACAA
i caePb3.Scfld02_0      I 5 I 14
s caeJap4.Scaffold10737   42943 42 +    47500 aaaatga------aaatgattgAACAGCAG---TCGATCAAACATTG----------AAAG
i caeJap4.Scaffold10737 C 0 C 0

a score=-3101.000000
s ce10.chrX             3258223 22 + 17718866 TGGACA--------TAGAACAGATTAGCCA
s cb4.chrX              8328388 12 + 21540570 TAAAAAACG---ATT---------------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   419550 27 -  4500979 TAAAAAACG---AGTAGAACCGATTAATCA
i caeRem4.Crem_Contig0  I 2 I 1
s caePb3.Scfld02_0      1642227 20 +  4147112 TAAAAA----------GAACTAATTCATCA
i caePb3.Scfld02_0      I 14 I 1
s caeJap4.Scaffold10737   42985 29 +    47500 -ATACATCGTGCAACGAAAACGATTAATCA
i caeJap4.Scaffold10737 C 0 I 2
e caeSp111.Scaffold629   525800 48 - 33334924 I

a score=13676.000000
s ce10.chrX             3258245 12 + 17718866 AGGTACAAAGTA
s cb4.chrX              8328400 12 + 21540570 GGGTACAGAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   419578 12 -  4500979 GGGTACAAAGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   525848 12 - 33334924 AGGTACAAAGTA
i caeSp111.Scaffold629  I 48 C 0
s caePb3.Scfld02_0      1642248 12 +  4147112 GGGTACAAAGTA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold10737   43016 12 +    47500 GGGTACAAAGTA
i caeJap4.Scaffold10737 I 2 I 1458

a score=8161.000000
s ce10.chrX             3258257 81 + 17718866 -------GATGGGTCTATTGTAGCCCAATA--AAACGTG-AGAATCGTATTGGCCAATTTACGGGAAAG--------GCCATCTGGAAAACAATGATCT
s cb4.chrX              8328412 81 + 21540570 TGTGGATGAGAGGTCTGTTGTAGTC-------CAATA---GAGATCAGATTGATCATAGTATGCATGAG--------ACCCTctggggaaaaaaaagat
i cb4.chrX              C 0 I 186
s caeRem4.Crem_Contig0   419590 64 -  4500979 -------GATGGGTTTATTGTAGTC-------AAATATTGTAGATCAGTTTGACCAATGTATACGTGAG--------ACCCT---GGGA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   525860 62 - 33334924 -------AATGGGTATCGTGTAGCC-------AGTTATT-GAGATCAGATCGGTCAATGTCCATGAGAG--------TCCATCTG--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1642260 77 +  4147112 -------GACGGGTCTAATGTAGCCGAACAAAAAACGCC-AAGATTAGATTGACCGATGTACGTGAAAGGTGGTAAATCCTTCTG--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   43028 1458 +    47500 I

a score=-3967.000000
s ce10.chrX             3258338 11 + 17718866 CTAATATGA-AT------
s caeRem4.Crem_Contig0   419654 10 -  4500979 -CAATATTA-AT------
i caeRem4.Crem_Contig0  C 0 I 182
s caeSp111.Scaffold629   525922 11 - 33334924 ------CTA-ATGGGAAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1642337 11 +  4147112 ------ATATATGTGTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328493 186 + 21540570 I

a score=-31.000000
s ce10.chrX             3258349 1 + 17718866 T
s caeSp111.Scaffold629   525933 1 - 33334924 C
i caeSp111.Scaffold629  C 0 I 162
e caePb3.Scfld02_0      1642348 0 +  4147112 C
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328493 186 + 21540570 I
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=-288.000000
s ce10.chrX             3258350 122 + 17718866 CTGTCATCTGGGAATAGGGCTCAAACATTTGAAAACCAGAAAAAAAAACAAT--------TTTGTGTCTTAAAAATTTTAGCTAGTGTTGAA-AGTTTAAAAATATTTTTGAAAAATTGTGTTTTATGGGA
s caePb3.Scfld02_0      1642348 113 +  4147112 TTTTGAACAGAAAGGACTGTTCAAA------GAAAGCATTGTAAAAGGCAATCCATCATCTTTATCTCCTCA---TCTTAGC--ATGGGGAATAGCATCAAACTAC-------GGACTGTATCTGATAAGA
i caePb3.Scfld02_0      C 0 I 84
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328493 186 + 21540570 I
e caeSp111.Scaffold629   525934 162 - 33334924 I
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=0.000000
s ce10.chrX             3258472 63 + 17718866 TCCTTACAATATTTTTTCGTTTTCATTTTGAAACCAAAAAAACCCAAAACCGAATGTACCGAA
e caePb3.Scfld02_0      1642461 84 +  4147112 I
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328493 186 + 21540570 I
e caeSp111.Scaffold629   525934 162 - 33334924 I
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=253.000000
s ce10.chrX             3258535 63 + 17718866 ATTCTG----------CGGCAAAAAAAC--TTTTTTTCTGAAGTCGTTTTCTTTTTCTGTGGGTCGAATTCTATA
s caeSp111.Scaffold629   526096 73 - 33334924 ATTCTGATACTGATGTCGTCCAAAACACAATCTATTCTTGAAACTACCCCAATTTTCTCACGGATGATTTCTA--
i caeSp111.Scaffold629  I 162 C 0
e caePb3.Scfld02_0      1642461 84 +  4147112 I
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328493 186 + 21540570 I
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=-2981.000000
s ce10.chrX             3258598 27 + 17718866 TGAATAAAAATTTTCATA-------ATTTTTTCC----------------
s cb4.chrX              8328679 48 + 21540570 TGAAGAAAA--TCATGTAGTCCATCATTCGCTCTTTTAGCAATTTAGCTC
i cb4.chrX              I 186 I 3
s caeSp111.Scaffold629   526169 16 - 33334924 ---AG--------ATGTA-------CTTTGTTCC----------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1642461 84 +  4147112 I
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=0.000000
s ce10.chrX             3258625 3 + 17718866 GGT
e caePb3.Scfld02_0      1642461 84 +  4147112 I
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328727 3 + 21540570 I
e caeSp111.Scaffold629   526185 0 - 33334924 C
e caeRem4.Crem_Contig0   419664 182 -  4500979 I

a score=-28270.000000
s ce10.chrX             3258628 155 + 17718866 AGTTTTTT------TTG---GTTTTCCAAAGTCCCAGCCCTGCATGGATTGTGTTTTGAACTGCAGACCTGAAGACCTGTTGCCGTATTCAATGTTTGCTGAAGAAATGGAGAATCATACTATAGACTATGAAAGATAATGATAACATAAAATTATATCAACCA-----
s cb4.chrX              8328730  93 + 21540570 AGttttttctgtcattc----tttttcgacatctggatcttcttccatttggttttt----------------------------tatttcatgtgtttCACA------------------------TCCCACGGACCA---------------ACATCAATCG-----
i cb4.chrX              I 3 I 40
s caeRem4.Crem_Contig0   419846  57 -  4500979 aattattt------ttc----tttttctacatA-----------------------------------------------------ATGTCGTGCTTTGAGAA------------------------TGTAAAAGA--------------------GTCAAACT-----
i caeRem4.Crem_Contig0  I 182 C 0
s caeSp111.Scaffold629   526185  80 - 33334924 -------T------TTCCA-ACTTTCCAAAGGACTCAGCTAATCTATCttcagtcat----------------------------ttttttctgcattccTGA------------------------ACCGAAGC---------------------GTCAGAAAGTG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1642545  65 +  4147112 agtttttt------ttccatgctTTCCCAGAGATC---CTAA--------------------------------------------------CGGATTACACA------------------------TGTGAAAC---------------------ATCAAAGTATgct
i caePb3.Scfld02_0      I 84 C 0
e caeJap4.Scaffold10737   43028 1458 +    47500 I

a score=-11309.000000
s ce10.chrX             3258783 94 + 17718866 AATAAGGAAATTGCAATTCGATTCGCCTTAAACCTTCAACGAAATTATTTTGAGTTGATTGTTCGGTCTTCCAGGACCCGATTCATGCAACTAC-
s caeRem4.Crem_Contig0   419903 66 -  4500979 ---------TTTGTGTCTTGATCCTCTAGCTTCAACCAATcaaaccattttttcttccg--------------------GAAAAACGGACTCGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   526265 41 - 33334924 -----------------------TACAATGAG-----AATCACCCCATTCCAAT-------------------------GGCACATGGATTCCt-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1642610 81 +  4147112 ----------ttttgcagtttttttcaatgatgcgccaaccaatccatcttcattttttcttt---tcttttttaatccGAAACGAAGAATCAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   43028 1458 +    47500 I
e cb4.chrX              8328823 40 + 21540570 I

a score=3597.000000
s ce10.chrX             3258877 121 + 17718866 TCTCTTCAAAAATATCCGA----ACTGACCCCAACACACGGAACAAAAAAAATCTGCCCCGAATCATTTATGCTACACTCTCTTTCGAT-ACCC--ATCCGAGTCCAGC-CGTCCATCTCTGCTAATCG
s cb4.chrX              8328863  63 + 21540570 ----------------------------------------------------tctcttcaaaatctC-------ACACTATTTCTAGTTGACCC--TTT----TCTATCGAGTCCGTCA-TGATAATCT
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   419969 115 -  4500979 --------GAAACATCCAATGTGAATCACCCCACCAAATGGCACACGGA--ATTTGTTCAAACTCTCTCCAATTACACGCTCTTTTATTGACCC--TTCCGAGTTCATC-AGTCCGTCG-GTCTAATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   526306  73 - 33334924 ---------------------------------------------------atctct---atctctctccaaaactacactctttttttgccCCCGATCCGAGTTCAAG-CGTCCATCG-TGATAATCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1642691 113 +  4147112 --------GAAATGTCCGATGTAAATCGCCTCATCCAATGGCACATTAA-AATGTCT---GATTCTCTTCAATCTCACACTCtttttttGACGC--ATCCGAGTTCACC-AGTCCATCG-TGATAATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold10737   43028 1458 +    47500 I

a score=550710.000000
s ce10.chrX             3258998 745 + 17718866  
s cb4.chrX              8328926 825 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   420084 767 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1743
s caeSp111.Scaffold629   526379 761 - 33334924  
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1642804 806 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold10737   44486 762 +    47500  
i caeJap4.Scaffold10737 I 1458 C 0

a score=-6373.000000
s ce10.chrX             3259743 24 + 17718866 ATTCAGAAACTATTGTAATTTT--TG
s cb4.chrX              8329751 21 + 21540570 -ttcaaat--tactgtgatttttg--
i cb4.chrX              C 0 I 1116
s caeSp111.Scaffold629   527141 16 - 33334924 A-TCGAAT-----TGTGATGAC----
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1643611 17 +  4147112 ATTTGTAT-----TGTGATTTC----
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold10737   45248 17 +    47500 -GCTAAACGTCATTATTA--------
i caeJap4.Scaffold10737 C 0 C 0
e caeRem4.Crem_Contig0   420851 1743 -  4500979 I

a score=309.000000
s ce10.chrX             3259767 20 + 17718866 TATGAATTGATTTCTCAATG
s cb4.chrX              8330888 16 + 21540570 tctgaatt----ttccaatt
i cb4.chrX              I 1116 I 1273
s caeSp111.Scaffold629   527157 18 - 33334924 TATCgcttta--tttcaatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1643628 18 +  4147112 TATGgcttta--tttcaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   45265 19 +    47500 TATGCtttataatttcatg-
i caeJap4.Scaffold10737 C 0 C 0
e caeRem4.Crem_Contig0   420851 1743 -  4500979 I

a score=-2432.000000
s ce10.chrX             3259787 20 + 17718866 TACTTTTTTTGCCACTGATG-------
s caeSp111.Scaffold629   527175 20 - 33334924 tctttttcattgtaactttc-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1643646 19 +  4147112 ttctgtttttatgaacTGC--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   45284 26 +    47500 -ttttcttttgtaaaatttcactgtat
i caeJap4.Scaffold10737 C 0 C 0
e cb4.chrX              8330904 1273 + 21540570 I
e caeRem4.Crem_Contig0   420851 1743 -  4500979 I

a score=-2355.000000
s ce10.chrX             3259807 22 + 17718866 TATTTC------------------AAGTTTCAAATAAACT
s cb4.chrX              8332177 31 + 21540570 TCTTTCAAGCTTTTG---------AACAGCGAATTGTGTC
i cb4.chrX              I 1273 C 0
s caeSp111.Scaffold629   527195 40 - 33334924 aatttcaatcatttttgttttctaaattttgattcttaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1643665 16 +  4147112 ------------------------AATTCTGAATTCTAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold10737   45310 22 +    47500 tttttc------------------aattttgtaataaatt
i caeJap4.Scaffold10737 C 0 N 0
e caeRem4.Crem_Contig0   420851 1743 -  4500979 I

a score=1119.000000
s ce10.chrX            3259829 4 + 17718866 GAAA
s cb4.chrX             8332208 4 + 21540570 GAAA
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     1643681 4 +  4147112 GAAA
i caePb3.Scfld02_0     C 0 I 1805
e caeSp111.Scaffold629  527235 0 - 33334924 C
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=1030.000000
s ce10.chrX            3259833 22 + 17718866 AGTTAGATCGATTCTGTAATGT
s cb4.chrX             8332212 22 + 21540570 ATGTTAATTGATGCGTTAACTT
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629  527235 22 - 33334924 aaataaattcattcttgaaagt
i caeSp111.Scaffold629 C 0 T 773
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=-967.000000
s ce10.chrX            3259855 297 + 17718866 GATATGGGGCAA-AAAATAAGAAAAATAACGCGGTTCTTTTGTGATTCA--TGCTGCATAGCCCTCTGAAGTTTTTTGTTTGGGAAATGTTTTCACTGGTTTAAAAATGTACATATTAGGAGTTCTAGAAAGCAAAGTTGATTAAAATTTGAATTTTTGTTAACGTGTAAAAGTGACACAAGTGTTAAAAAGAAAATTTTGCACATTGAAGACTTGAAATTAAGAAT-----CAAATTATCAGATGAATTGAACCTATGCTGGAATCAAAACATGAAAGTTCGATTGCGCCGTGATATTTGCAAA
s cb4.chrX             8332234 219 + 21540570 TGTCTAGGACACTAAAATA------------------TTTCATAGTTCAGATAATTTTTAgcc-----gaaattttgattcgaGGGACGCAGATACTGCAAGAGAAATCCacaaatttagatttctg-----------CGATTAAA---TTActcttttctga----------------aagttttga--------ttttgta-----ATGACTATTAATTATGAACTTTTGCAAGGAATTATATGATTT---------------TCGAAAGATAAA----CAAATGCTTC-TGACATTTCTATA
i cb4.chrX             C 0 I 21
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeSp111.Scaffold629  527257 773 - 33334924 T
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=0.000000
s ce10.chrX            3260152 27 + 17718866 AACGTAATTCAAAACACAAAAAGGACA
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e cb4.chrX             8332453 21 + 21540570 I
e caeSp111.Scaffold629  527257 773 - 33334924 T
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=-1461.000000
s ce10.chrX            3260179 402 + 17718866 CAACCAGTTTAAAATTTCGGGTGGGTCAAAATCCAATCA-CTTTTCGGTTTTTTT-----------TTTTCGATGTTGTGTTCGAAA---GTTTTCTATAAAATGGAGTTTTTTCTACTCTTTCGTATGCTCTTTTTTATTTTTTTTTTCCTGATTTTCACATTTAATT-------------TCTGAATAAGGTACCATTAAATAAGAACCATTTCTCAAAATA------CATAGTTTAATAACTAAAATCATTGGATCTTGAGGACCTCATTAAAAATATTTTTTTAAGTCTTAAATTGTTTGATGTGCAGTCAAAAAACGTAGCAGTTTTCTTTTCAATTTTCTTAACGCGTTTAAATTTATTTCGACAAAATT--CATTCTGCATTTCAACAAGTA-ATCGATGAATTGTTTTCGTTCGGTCTCTTAAATTTTGTT
s cb4.chrX             8332474 365 + 21540570 CAGCCAGTTT-----TTCAGCCGGTTT------CAGTCAGCGTCTTGGATAATTCATCAGGAAGTATTATCGAAATAATATTGGAAAcgagttttccagaaaat--------tcccaCAC----ATATACT---TTGAATTGCATGTTAGGGAATATATACATTTTATGAAACTCGGTTATATGTAGATAAAG-GCAAATAAAAGACCATCACTCCCAAAGCTATGGTTTCCTTGGTTAAgaactggaa-aattgaaattcaagga-----------GTATTCCTATCA------------------------CAAAAAACATACTCATAGCCCTCCCCTTTATCTCAAA-----------CATCTCTTCAGGACCACTATCCAGCCTCTAAACAATAACAATGTTCAGAGATTAACATGTGGTGTCATCAATGTTGTT
i cb4.chrX             I 21 I 152
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeSp111.Scaffold629  527257 773 - 33334924 T
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=0.000000
s ce10.chrX            3260581 122 + 17718866 TATTATTAGCTTCCAGGTGTTGTGAGGATTTTTGAAAATCAAGTAAGTCCGATCATCAATTTGTTGTTGCCATCCGTGCCGTGACCCTATATTACACACGTGGCTGACCTCAGTTTTATTGT
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e cb4.chrX             8332839 152 + 21540570 I
e caeSp111.Scaffold629  527257 773 - 33334924 T
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=354.000000
s ce10.chrX            3260703 44 + 17718866 GTTGTCGATTGAGCAACTGGGCGGAGTCTTGATCAATCTTCATT
s cb4.chrX             8332991 42 + 21540570 GCTGTAAATCCAGCGGCTG--CCGCTTCTTCCCAGGCCGTTATT
i cb4.chrX             I 152 C 0
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeSp111.Scaffold629  527257 773 - 33334924 T
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=-1643.000000
s ce10.chrX            3260747 81 + 17718866 TCTGTGGACACTTCAGTCATTCAGT-CATTGACTTGAACAAAAATGTCT-----TCGAAATTCCTCATCTTACTCGCAT--TTTGTGGA
s cb4.chrX             8333033 81 + 21540570 ---GCTGCTGCAGCAGCTACTGCCTCCAACCTTCCTACCCATTATGAGCAATCCCCAGCATCCCGC-----GATCGTATAACTCGTGGA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629  526484 81 - 33334924 TCCACTCAGACGTCAGTCGTTCTCT-CATCGACCCAACCGACCATGTGTG----CCAAAATCGCTC---TTGCCCTTCTTCTTGTTGGA
i caeSp111.Scaffold629 T 773 I 3299
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=-220.000000
s ce10.chrX            3260828 24 + 17718866 GCTACCCTTGTGGCTGCCGAACAG
s cb4.chrX             8333114 12 + 21540570 ------------ACTAATGATATG
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629  529864 24 - 33334924 GCTACTCGTTCCGCTTCTGATATT
i caeSp111.Scaffold629 I 3299 C 0
e caePb3.Scfld02_0     1643685 1805 +  4147112 I
e caeRem4.Crem_Contig0  420851 1743 -  4500979 I

a score=199312.000000
s ce10.chrX            3260852 587 + 17718866  
s cb4.chrX             8333126 582 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  422594 629 -  4500979  
i caeRem4.Crem_Contig0 I 1743 I 1519
s caeSp111.Scaffold629  529888 565 - 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1645490 667 +  4147112  
i caePb3.Scfld02_0     I 1805 C 0

a score=-2677.000000
s ce10.chrX            3261439 20 + 17718866 ---------AATAAATTTATTT-----TCAAGCA
s cb4.chrX             8333708 13 + 21540570 ---------AATAAA------------TTCATCA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629  530453 10 - 33334924 TTT------------------------TCTCGCA
i caeSp111.Scaffold629 C 0 I 2726
s caePb3.Scfld02_0     1646157 34 +  4147112 tgttcgagTAGTGAAATCCCTTTTCGATCTCgca
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0  423223 1519 -  4500979 I

a score=-121.000000
s ce10.chrX            3261459 27 + 17718866 ATCTTCTGA----TGTTTTCAATTTGGAATC
s cb4.chrX             8333721 27 + 21540570 AATGTACAA----TGTTCTCGAATACGattc
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     1646191 27 +  4147112 ----ttccactttttttctcattttcatatc
i caePb3.Scfld02_0     C 0 I 8450
e caeSp111.Scaffold629  530463 2726 - 33334924 I
e caeRem4.Crem_Contig0  423223 1519 -  4500979 I

a score=182.000000
s ce10.chrX            3261486 2 + 17718866 TT
s cb4.chrX             8333748 2 + 21540570 tt
i cb4.chrX             C 0 I 4319
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e caeSp111.Scaffold629  530463 2726 - 33334924 I
e caeRem4.Crem_Contig0  423223 1519 -  4500979 I

a score=0.000000
s ce10.chrX            3261488 4530 + 17718866  
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e cb4.chrX             8333750 4319 + 21540570 I
e caeSp111.Scaffold629  530463 2726 - 33334924 I
e caeRem4.Crem_Contig0  423223 1519 -  4500979 I

a score=2094.000000
s ce10.chrX            3266018 257 + 17718866 GCAAAAATAACTCTTCGAATGAACTACGCCGTGATTATTGTCACCGCAACTGTACTTATTTTTCGAAGCATATTCCAAACGGTATTTTGTTTTTTACCTGTAAACGTTTTCTTTTGAAATAACAT---GTTCAGATTGGCTCTGATCTCATCTCATATTGGCTCACTAATCTAGTAAATTTCTTGTTCTTCTCCATCGCAACTGTTGATCATGGAGTTGTTCTTTGCGTAGTGTGTTCACTTG----TACATATTGCTGGTGGA
s caeRem4.Crem_Contig0  424742 252 -  4500979 GCAAAAATGACTC---GCTTCAATTTCGGTCTCTTGATTATCACCGCGTGGATTTTGATTGCTCGAAATAGTGCTCTAGAGGTACTTTACCTTGGTTtcacaa-----tttcagccaaataaTATTGAACACAGACAAATTATGATGACCTGGCATCCTGCTTTACCAATCTTCTTAACTTCAATTTATTCTTCATCTGTATTGTCGATCTTATCTCT-TTATTTGTTCAGTCTTT---CTTGGCGATTCGTGTTGCAGTTGGA
i caeRem4.Crem_Contig0 I 1519 I 120
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e cb4.chrX             8333750 4319 + 21540570 I
e caeSp111.Scaffold629  530463 2726 - 33334924 I

a score=0.000000
s ce10.chrX            3266275 120 + 17718866 CATCGAAATGTTCCGAAAATAGTGTGGATCACTTTTCTGGTCTTAGCAGGATTGTTTTCGTTCTGTGCGACGGCAATAACTATCAATGGATTTCCAACCATCATCAATGATAATGGATAC
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e cb4.chrX             8333750 4319 + 21540570 I
e caeSp111.Scaffold629  530463 2726 - 33334924 I
e caeRem4.Crem_Contig0  424994 120 -  4500979 I

a score=2748.000000
s ce10.chrX            3266395 819 + 17718866  
s caeRem4.Crem_Contig0  425114 780 -  4500979  
i caeRem4.Crem_Contig0 I 120 C 0
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e cb4.chrX             8333750 4319 + 21540570 I
e caeSp111.Scaffold629  530463 2726 - 33334924 I

a score=-54.000000
s ce10.chrX            3267214 37 + 17718866 --TTTTTGTTTCATTTTTTTTTATTCAAT---TCTTTTTCCA---
s caeRem4.Crem_Contig0  425894 45 -  4500979 tttttcccttgatctttgctttttcaactgtttcatttttctcta
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  533189 40 - 33334924 --tttctctctccctcctcttttctcagt-cctcagttttctt--
i caeSp111.Scaffold629 I 2726 I 1
e caePb3.Scfld02_0     1646218 8450 +  4147112 I
e cb4.chrX             8333750 4319 + 21540570 I

a score=-5535.000000
s ce10.chrX            3267251 76 + 17718866 ---ATTTTTTCTCGATAATAAAACAAAAAT-----ATAAGTAAAATTCCACAGATTTATGCAATCACAAAAA---------------TGACA-ATTAGAA
s caeRem4.Crem_Contig0  425939 78 -  4500979 aactttactttttATTCCC-GGCAAATGCG-----TTTAAAGGTATTT---------ATTGAATATGACAAA------TAGctgaattgatt-tttgaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  533230 91 - 33334924 ---gttgttcttagtc------tcaaaatatcattttcaataatgttgaacaaattcattgaatatgATAAAACCAGCAACGTGAATTGACttgttaaaa
i caeSp111.Scaffold629 I 1 C 0
s caePb3.Scfld02_0     1654668 76 +  4147112 ---ATTTTTTCACGGCGAT-GATCAAAGAG-----ATTAGAAATTTTG--TAAACTCATTCCATATGACAAAACCTGCGA-------------GTTGGaa
i caePb3.Scfld02_0     I 8450 C 0
e cb4.chrX             8333750 4319 + 21540570 I

a score=338503.000000
s ce10.chrX            3267327 1054 + 17718866  
s cb4.chrX             8338069 1042 + 21540570  
i cb4.chrX             I 4319 C 0
s caeRem4.Crem_Contig0  426017 1074 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  533321 1076 - 33334924  
i caeSp111.Scaffold629 C 0 I 2
s caePb3.Scfld02_0     1654744 1095 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=387.000000
s ce10.chrX            3268381 2 + 17718866 AA
s cb4.chrX             8339111 2 + 21540570 GG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427091 2 -  4500979 GA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     1655839 2 +  4147112 GA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  534397 2 - 33334924 I

a score=49261.000000
s ce10.chrX            3268383 78 + 17718866 CACTGGTCACTCCAATTGTCACGACACTTGTAAATTCGCCAGCGATCTTCTACTGTGTAGTAGCATTTCCAGAGCTGA
s cb4.chrX             8339113 78 + 21540570 CACTGATCTCCCCAGTTATCACGACACTTATAGATGCGCCAACGGTCCTCCACAGTGTAGTAGCATTTCCACAGCTGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427093 78 -  4500979 CACTGATCAATCCAATTGTCACGACATTTGTATATCCGCCAGCGGTCTTCAACTGTGTAATAGCACTTCCAAAGCTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  534399 78 - 33334924 CACTGGTCAGTCCAGTTATCACGACACTTATAGATGCGCCAGCGCTCTTCAACTGTGTAGTAGCATTTCCATAACTGA
i caeSp111.Scaffold629 I 2 C 0
s caePb3.Scfld02_0     1655841 78 +  4147112 CACTGGTCTACCCAATTATCTCTACACTTGTATATTCTCCAACGTTCTTCAATTGTGAAGTAACATTTCCAGAGCTAC
i caePb3.Scfld02_0     C 0 C 0

a score=-8715.000000
s ce10.chrX            3268461 91 + 17718866 AACAAAATTGTGAAAGTTGATAGAAAACAGGTCATTGTTTTTGGATGTATTCCGTTATCGTTTCATCTTTTAAAATTGAATTTCAAATGAT
s cb4.chrX             8339191 80 + 21540570 ---AAAAGTTTATCGTTCAAGAGTGGAC----TATAATTTCTGGTTCTGGAACTTTAgca----gattttgagatttgggAAATACATAAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427171 40 -  4500979 ---AAAA-----------AGTAgtgaa------ataat--------------------------aaatttgaaagttga-----atTTACT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     1655919 33 +  4147112 ---------------------AAGAAA------TCAAT--------------------------GATTTCTAAAATTGA-----CTATGGT
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  534477  0 - 33334924 C

a score=-5469.000000
s ce10.chrX            3268552 31 + 17718866 TCATAAAGACTAGAAATAAAAAAACCT----------------CCCA------------------
s cb4.chrX             8339271 61 + 21540570 T--TGAAGTTCTCAA--AAGAAAGCTTTGTGGATGGTATTAAATCTAAGTTATAGATGACAAGAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427211 10 -  4500979 T------GTCCT-------------------------------TCCA------------------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     1655952  0 +  4147112 C
e caeSp111.Scaffold629  534477  0 - 33334924 C

a score=55.000000
s ce10.chrX            3268583 145 + 17718866 AAAATGCCCTTTTGTGACACTCTTAAATTTTAAATAAAAACACCAAATTT---AGATAAGAATCTGATAATTTTCAAAACTTCTACGTGTCGCAGCAAAAATTTAA-----ATTAGCCAGAAA---------AAATTCACGAAACAAAAGTTTAAAATCTGC
s cb4.chrX             8339332 152 + 21540570 AAAACAGATTTC----ATATTTTCGCTTTTCGTttaaaaatagtcaatttgtcagaaaaaagtac----attttttaaatttacaaTTCTTTTGGTACAAACTCGATCAAGATATGCCGAAAATGGCACGAAAAATTCACCGGA--AAGGCACGAAAATGGC
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0     1655952   0 +  4147112 C
e caeSp111.Scaffold629  534477   0 - 33334924 C
e caeRem4.Crem_Contig0  427221   0 -  4500979 C

a score=-1471.000000
s ce10.chrX            3268728 10 + 17718866 AAAAAAAAAC--
s cb4.chrX             8339484 12 + 21540570 ACAATCAAAAAT
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold629  534477  4 - 33334924 -------AGAA-
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1655952  0 +  4147112 C
e caeRem4.Crem_Contig0  427221  0 -  4500979 C

a score=-26298.000000
s ce10.chrX            3268738  99 + 17718866 CATAACTTGTTTG--------------------------------------------------AAAAATTCAAATTATCGTG-------AACCATTTTTTCCAAATTTTTTAATGAATTTTTGAGT-------------------------------ACGTTTTTA----------------------------------------------AGAAGTTTGTGAAAAAAAAAA--
s cb4.chrX             8339496 229 + 21540570 -AAGAGTTGTGTTTCTTTATTCGCTATTCTGAAGTGTTacgaaaaagtggtcaatcaGAGAAACGAAGTTTAATTTTCATTGAttgtgatatcaatttttccgaG-----CAATGAAATACCTGGGATACTTCTTTAAGACTCCAAAGTttaaaatatcttttttggtcaatttgGATAGATTCCAGACTGTATGTTGactcaaaaaaccgaaaaaatttaatagaaaccaaaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427221  28 -  4500979 ---------------------------------------------------------------CACAATCTCGTTgccattt---------------------------------------------------------------------------tcttcttcg---------------------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  534481  35 - 33334924 -------------------------------------------------------------------GTTTGAATGATATTA---------------------------------------------------------------------------TCATACGTA---------------------------------------------------TCTGATAACAA-------
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1655952   0 +  4147112 C

a score=25438.000000
s ce10.chrX            3268837 69 + 17718866 TCTTACCTGTCCATGAACACAATCTCTTTGCCATTTTCTTCTTTTACACTCCTTAGACAGTCTATTTTC
s cb4.chrX             8339725 69 + 21540570 CAATACCTGCCCCTCTACACAATCTCTCTGCCACTTCCTCCGTTTGCATTCCTTGGACAGCCGGTTCTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427249 24 -  4500979 ---------------------------------------------gcACTCTTTGGAAAGCCGATTTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  534516 66 - 33334924 ---TACCTGCCCTTCGACACAATCTCTCTGCCATTTCCTCCTTTTGCATTCTTTCGAAAgtctattttc
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1655952 69 +  4147112 TCTTACCTGTCCTTCTACACAATCACGTTGCCATTTTCTCCGTTTACATTCTTTGGATAGTCGATTTTC
i caePb3.Scfld02_0     C 0 I 1

a score=67.000000
s ce10.chrX            3268906 1 + 17718866 C
s cb4.chrX             8339794 1 + 21540570 C
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  427273 1 -  4500979 T
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  534582 1 - 33334924 t
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1656021 1 +  4147112 I

a score=299089.000000
s ce10.chrX            3268907 744 + 17718866  
s cb4.chrX             8339795 721 + 21540570  
i cb4.chrX             C 0 I 31
s caeRem4.Crem_Contig0  427274 722 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  534583 709 - 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1656022 731 +  4147112  
i caePb3.Scfld02_0     I 1 C 0

a score=-2720.000000
s ce10.chrX            3269651 41 + 17718866 ATTGATTAAGTTTGTAAGTCCAAACTAAATTCAAACAAACC----
s caeRem4.Crem_Contig0  427996 30 -  4500979 --------ACTTTGTAGTTAAGAATAATGTTAAATAAG-------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     1656753 36 +  4147112 ---------TTTTAATCCTAGAAAAAAGGATTAACCTATCCTCAC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8340516 31 + 21540570 I
e caeSp111.Scaffold629  535292  0 - 33334924 C

a score=206900.000000
s ce10.chrX            3269692 581 + 17718866  
s cb4.chrX             8340547 478 + 21540570  
i cb4.chrX             I 31 C 0
s caeRem4.Crem_Contig0  428026 484 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  535292 475 - 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1656789 480 +  4147112  
i caePb3.Scfld02_0     C 0 I 29

a score=-2785.000000
s ce10.chrX            3270273 43 + 17718866 AATACGTCTTTGACTCTCTCGATTTTTCTAGGTGACTAATGAA
s cb4.chrX             8341025 43 + 21540570 aataagattttatttttctcagtttttgcaattttttaaacaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  428510 36 -  4500979 aataagaagtttcttatc-aaattttcacatgttcTT------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  535767 33 - 33334924 ---ACGTGTTAGTTTCTGACTGAGATCACAGTTATT-------
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1657269 29 +  4147112 I

a score=78819.000000
s ce10.chrX            3270316 130 + 17718866 GACTTC----TTACCTCCACTCGACTCCAGTGCAGTTTTGATTGTTTGTATGTACATGATGATTATGTACATATAATCCTGTCAGAATGGTAGAACGACTGGGACAGCAGATTGGAGTTGTAACATAGCT------ACAA---
s cb4.chrX             8341068 129 + 21540570 --------aaaaacctcCACTCGACTCCTGTGCAATTTCCATTATTCGTATGCACATGATGGTTATGTACGTATAATCCAGTAAGAATAGTAGAACGACTAGGACAGCAAATTGGTGTTGTCACATATCT------GAAACAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  428546 132 -  4500979 -----------TACCTCCATTCGATTCCAGTGCAGTTTTGATTATTAGTGTGCACATGATGATTATGCACGTATAATCCGGTAAGAATAGTTGACCGACTGGGACAGCAAATTGGAGTTGTTACATATCTAataacaaaatag
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  535800 127 - 33334924 ---TTC----ATACCTCCATTCGACTCCTGTGCAATTCTGATTGTTTGTATGAACATGATGATTATGTACATATAATCCGGTCAGAATAGTCGAACGACTGGGACAGCAAATTGGAGTTGTTACATACCT------ACAA---
i caeSp111.Scaffold629 C 0 I 25
s caePb3.Scfld02_0     1657298 134 +  4147112 GATTTCTTAGATACCTCCACTCAACTCCTGTGCAGTTTTGATTGTTAGTGTGAACATGATGATTATGAACGTATAATCCGGTGAGAATGGTGGAACGACTTGGACAACAAATTGGAGTTGTGACAtacct------gaaa---
i caePb3.Scfld02_0     I 29 C 0

a score=-4599.000000
s ce10.chrX            3270446 17 + 17718866 AATTTTGGATTACGGTA--
s cb4.chrX             8341197 19 + 21540570 AACTATTTTATttacagta
i cb4.chrX             C 0 I 447
s caeRem4.Crem_Contig0  428678 18 -  4500979 aactctttGCTTAAAAGA-
i caeRem4.Crem_Contig0 C 0 I 3
s caePb3.Scfld02_0     1657432 17 +  4147112 aagtgaaatggagAATG--
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  535927 25 - 33334924 I

a score=-439.000000
s ce10.chrX            3270463 9 + 17718866 AAAATAAAA-
s cb4.chrX             8341663 7 + 21540570 --aaaaaaa-
i cb4.chrX             I 447 C 0
s caeRem4.Crem_Contig0  428699 9 -  4500979 GAAGTGAAA-
i caeRem4.Crem_Contig0 I 3 C 0
s caePb3.Scfld02_0     1657449 9 +  4147112 -AACATAAAG
i caePb3.Scfld02_0     C 0 I 6
e caeSp111.Scaffold629  535927 25 - 33334924 I

a score=198619.000000
s ce10.chrX            3270472 522 + 17718866  
s cb4.chrX             8341670 518 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  428708 468 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  535952 487 - 33334924  
i caeSp111.Scaffold629 I 25 I 21344
s caePb3.Scfld02_0     1657464 485 +  4147112  
i caePb3.Scfld02_0     I 6 C 0

a score=-673.000000
s ce10.chrX            3270994 23 + 17718866 TCAAATTTCTTGGCTCGACATTT
s cb4.chrX             8342188 17 + 21540570 -TGAGATTCTTGAC-----ATTT
i cb4.chrX             C 0 I 7569
s caeRem4.Crem_Contig0  429176 17 -  4500979 -TGTCACTCTTGAC-----ATTC
i caeRem4.Crem_Contig0 C 0 I 13
s caePb3.Scfld02_0     1657949 19 +  4147112 CGGAATTTCTTGGTT---GATT-
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  536439 21344 - 33334924 I

a score=-2220.000000
s ce10.chrX            3271017 101 + 17718866 GATATTGTCATGTGGAATTCCAAGTCCGGATGTACCTGAATGATTTACGACCTAGTAA-------------------CATGT------TAAATAAAATCAATACAATTTTTGATAA-----ATAAACGTTT
s caeRem4.Crem_Contig0  429206 112 -  4500979 --GAATGTCATATG---TAACAAGTTC-ATTCGCACTCAAAACCTTGAGACACAGGCATTTATTACTtcataattattattttatgtacattcaaaaataata------tt--taa-----tAAAACGTTT
i caeRem4.Crem_Contig0 I 13 I 14513
s caePb3.Scfld02_0     1657968 104 +  4147112 GCAAATGTCATTTA---TTTCAGGT---AATATGAATTAAAAATGTAGGATTCAAATA-------------------TATTTAGTAGGTATAGAAAAGGAATAATGTTTTT--CAAGAGCCGAAGACATCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8342205 7569 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I

a score=619.000000
s ce10.chrX            3271118 131 + 17718866 TATAATCTTTCAGGATTCTTTTCAGAAATGTCATAGATAATTTAAAATATTGTTTTTGATTGATAATTCTCATTGTTTAATATAATTT--TTGAAACTG---------TACAATAATAATTTTTA----AGAGTATGTATAATAAT
s caePb3.Scfld02_0     1658072 131 +  4147112 TGAAAGTTATCATAAT----------AATAGGATGGTTAATGTATCTTACAATCTTGGCTGGCTAA-----GTGGTTCAATATAATATAATTATAAATGAGagttattttcagtaaaaatttttccactagtgtttgtttcataat
i caePb3.Scfld02_0     C 0 I 3015
e cb4.chrX             8342205 7569 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=0.000000
s ce10.chrX            3271249 78 + 17718866 TGTGACAACCCATTCCAGATGTCTAGCGTATATAAATGCACAATTAAAACATATGAGAGGCTCATTAAAAAATTTCAG
e caePb3.Scfld02_0     1658203 3015 +  4147112 I
e cb4.chrX             8342205 7569 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=2342.000000
s ce10.chrX            3271327 108 + 17718866 ATAAAAAAAAATTTCAGGTTTCAGTGTCAGTGTC--GGTTGTCGGCATGCATTCAGATTCGGTATCCAGATTTTTCATTGGGCAGTTCCGAAGAACCAATATTTGTCCAG
s caePb3.Scfld02_0     1661218  96 +  4147112 attgaaattaCCTTCCGATATCAGTATCAGTATCCTGGTTAG------------AAATTGGGGAT--GGACTTCTCATTGGACAATTGGTAAGAACCAATCGCTGACCAG
i caePb3.Scfld02_0     I 3015 I 27395
e cb4.chrX             8342205 7569 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=0.000000
s ce10.chrX            3271435 3834 + 17718866  
e caePb3.Scfld02_0     1661314 27395 +  4147112 I
e cb4.chrX             8342205 7569 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=2016.000000
s ce10.chrX            3275269 38 + 17718866 ATTTTATATTATTGTTTTCAAAAACTACAATATTTTTG
s cb4.chrX             8349774 38 + 21540570 ATTTCATATTATTTTGCTTCAGAACTACAGCATTTCTG
i cb4.chrX             I 7569 I 25543
e caePb3.Scfld02_0     1661314 27395 +  4147112 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=0.000000
s ce10.chrX            3275307 830 + 17718866  
e caePb3.Scfld02_0     1661314 27395 +  4147112 I
e cb4.chrX             8349812 25543 + 21540570 I
e caeSp111.Scaffold629  536439 21344 - 33334924 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=589.000000
s ce10.chrX            3276137 15 + 17718866 AAAAGTACAGAATTT
s caeSp111.Scaffold629  557783 15 - 33334924 aaaaacgcagaaata
i caeSp111.Scaffold629 I 21344 C 0
e caePb3.Scfld02_0     1661314 27395 +  4147112 I
e cb4.chrX             8349812 25543 + 21540570 I
e caeRem4.Crem_Contig0  429318 14513 -  4500979 I

a score=11159.000000
s ce10.chrX            3276152 410 + 17718866 AAAACAAAAGTTCGAAAAAAAGAACGCATACTATGTGACA------------ATTCACAGGTATTCTTCATATCCACGGAAATCCACACTGTTGCCGATGATCTTCAGAAGCAC------TTCTTGCTCCTTCATCAGAGCAAAGACTCGGTCGCCGATAGCCGCATACTGAGCACGAAGAGGCTCCGACTGTTCGAGTTCTGATACTCTGAGATCTATGTAGCGAAGGCCACGAGTTATCAAGTCTGAAACA---GATTCAAATATGAAAAGGGCTGAAAGGATTCCAAATAAGTTGTGTGTTACCTGACTCATTGTTATCAGCAAATCTGGTATGCTCGGCAATTCTATCCAATTTTCTTCCTTTCAGTGTGTCGGCATTGGAATCTAAACAAAGGTTATAATAATCAACTTCAAACTAAA----CAAAAAAT
s caeRem4.Crem_Contig0  443831 402 -  4500979 aacacaaaaatcggGAAA---------GTACCAtgtgaaaatagataaaattgttcaattatGGTTTTTGTATCCCCGGTAATCCACACTTCCTCC------CAAGTAAACCACAAGGGTCTGCTGTTTTGTCATCAGGTCGTAGACTCTGTTGCTGATTGCCTGGTACTGTTCATGGAGTGGATCCGTGGTGTCCAGTTCGGAGAGTCTCAAATCAATGTAACGAAGTCCTCTGATTATTGTTTCTGAAAGA-GTAATACAAATGT---ACATTATGTTAGAATGCGAAAC----------TCACCACCCTCCATCACACCAGCCAATCGAATATTCTCAGTGAGTCTGTCGAGGTTTCGACCACGCAATGTGTCGGAGTCTTCTTCTGCAAGATAAGTAGTGT-TTGATCTTGGAACTAGTA---CAATTAGT
i caeRem4.Crem_Contig0 I 14513 C 0
s caeSp111.Scaffold629  557798 380 - 33334924 -------aaat--aaaaa---------atac-------aagtGGAATAATGCATCTAAACATGCTCTTCATAGCCACGGAAGTCGACACAATTTGCGACGATCTTGTAAAGCAC------TTGCTGATCCTCCATCAATTTGAAGACACGATCACATATTTTCTTGTAATCTTGTTGGAGTGGCTCACTTTCGTGAAGTTCAGTCACTCTCAAATCAATGAAGCGAAGACCTTTGCTGATCATATCTGGAAAATATGAGattaattt-----attgaaaaagaataaccAAA----------GTACCGGATTCGCTAGCTCCGTTCAGTGTGATGTTCTTGACAAGTTCATCGAATTTTCTTCCCCGAATTGAATTTGGCTccgtttctgaaaaaagaacctTA---------TGAAACTGATCTGTCAATGAAT
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1661314 27395 +  4147112 I
e cb4.chrX             8349812 25543 + 21540570 I

a score=9274.000000
s ce10.chrX            3276562 81 + 17718866 -TCACTTACCAACAGGCTCGCCAATATACAATAGCAAATCTTTGATAACGTTTTTCTCGCGGATGTTAGTCGACTCAGCAGC
s cb4.chrX             8375355 81 + 21540570 -TTGCTCACCAAGAGGTTCCTCAATGAATTTGAGAAGTAGATTGACAACACTAGTCTCTCCAAGGCCAGTCAGCTCGGCACC
i cb4.chrX             I 25543 C 0
s caeRem4.Crem_Contig0  444233 81 -  4500979 -TCTCTTACCAACTTTCTCGCCAATGTAACCGCACAGATTTCTAATAACGCTACGCTCGCGCATTCCAGAAAGGTCGGCGAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  558178 82 - 33334924 TCAACTGACCAACGTGCTCTTGGATATACGCCATCAAACCTTTGATAACGGTTCTTTCACGTTCCCCAGTGAGGTCTGCTGC
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1661314 27395 +  4147112 I

a score=19501.000000
s ce10.chrX            3276643 181 + 17718866 CACATCATTATCCAAAATATAAAGCATTGCTTTGGCAACTCTCAAGCGGAAAACATAAACATTCTGGAACTTTTGGAGCCGCTTCTGGATGAGTG-GTCTACGACC---GTGCTCAACAT-----TGCGAAGTCCTCCATTAGCTTTCTTGTCGGCAAGATACTTCAGGCGACGGAACATGTCTG---------CAAAT
s cb4.chrX             8375436 175 + 21540570 GTCATCAATGTCCAAAATATGGAGAGCCATCTTGGCCACTCTCTTTCGGAAGAGATAAGCCTTCTCAAATTTGGCCAATCTCTTTTGCATGGCCC-GCTTTTGGAAT--TCGTTG----------TGCATGGCCAT--GTTTGTATGGCCGTCGACGAGGAATTTCAATCGACGATACATATCTG---------TAAAT
i cb4.chrX             C 0 I 1330
s caeRem4.Crem_Contig0  444314 190 -  4500979 AATATCCTGTTCTAGAATGTGAAGCATGGCTTTTGCGATTCTATAACGGAAAATGTAAACGTTCATGAATGTCTTGAGTCTCTTCTTGACGacat-tcttctttctt--tcgtTG-AAGT-----TTCGAAGTCCTCCAGTAGATTGCTTATCGTAAATAAACTTCAAACGGCGGAACATATCTAAAACAAAACTATAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  558260 184 - 33334924 AGTGTCAATATCCATAATGAAAAGCATTGATTTGGCAACTCTCATACGGAACAAGTAAACGTTCAGGAATCTTTGAAGGC----GAATTTGAACCATTTTGCGGCGATTATGTTCCAAAT-----TTCTGAGACCTCCTTGAGATTTCTTGTCGGCTAACTGCTTCATGCGACGGAacatatctgaaa------aaaat
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1688709 169 +  4147112 CAAGTCTTCTTGCAGAATATGCAGCATTGCTCTTGCAACTCTTCTGCGGAAGAAGTAGAGGTTTCGGAATTTCTGCAGTCTCTGGTATATGAGTC-TCTCGTGCTCA--ATGCTACATATAAGTCTTCTGTTGCTAC--tgagat--------ggagaagaattt--------gaaacatgtctg---------aaaat
i caePb3.Scfld02_0     I 27395 C 0

a score=-4122.000000
s ce10.chrX            3276824 48 + 17718866 TTTTTTTCCTGATGTGAAAAACTGAGAGATTTATAACTACATACCATG
s caeRem4.Crem_Contig0  444504 32 -  4500979 ----------TAGTTAG-----CCCAATACGATCTTTTC-TTACCATG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  558444 39 - 33334924 --------aaaatttagaaGGACTTGAGATGATCAATGA-GTACCATG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1688878 40 +  4147112 --------tgaatttgagagACTGTTCAATAGGAAATAACATACTGTG
i caePb3.Scfld02_0     C 0 I 2238
e cb4.chrX             8375611 1330 + 21540570 I

a score=-4071.000000
s ce10.chrX            3276872 194 + 17718866 TAAAGCTGCATTGCACGCGCGTTCCACAAATTCAGGAGTT---GGTTTTGCTAAGTTCACCT---------TCCTAGCGTC---------AAAGAATTCGGTGTCAAAAAACAGAGTTGGGTATGTTGGTGCAGATC---TACTCTCCCGATTATTGTTGTCTGATAGACGTCCTTCTCTGAAAACAGAAAGTCGTAATAAATTGGAATCAGaataaa-------
s caeRem4.Crem_Contig0  444536 170 -  4500979 AAGATCGGGGTCACAAGTACGTTCAGGAAACATTTGATCA---GGATTTGCGAgctcaatttctttctctccatcCGCGTCATAAGTTGCAAGAGGTT---GGTTA----------CTATCTGTATCGTTTTCCGTT---TCTTCTCTCAACTCTTCTTGcct------------------------gaaaat------------atattaaatTAACACCTAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  558483 184 - 33334924 TAATTCCGGGTCACATGCACGCTCTACAAAAGTTGCAGCCACTGGATCAGCCATTTCCACTTCGAGCTCACTGCTCTCGTC---TGTTGGACCAATTTCCACTTCA----------TCATATTCGTCGTTTCCAGCTGAGCATCCTTTAGATTCCATTTGCTT--TGG-------TCTCCTGAAACAAAGAAT------------gtatcaaaataaa-------
i caeSp111.Scaffold629 C 0 I 58
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I

a score=-160.000000
s ce10.chrX            3277066 57 + 17718866 taagaataaaa----tttttcaatttttcaatttaaaattCACCAACCTGTCATCATCCAA
s caeRem4.Crem_Contig0  444706 55 -  4500979 AAAGCATACAAACCCTACTTGACTGATTCAGTTTG----TTCCGAAGTTGT--TGATCCAT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I
e caeSp111.Scaffold629  558667 58 - 33334924 I

a score=166.000000
s ce10.chrX            3277123 381 + 17718866 CGATGGCAACTCGTGTGCAGAACTGCACGAAGAGCATTCGCTTCCGTTGCCGTGCCTACGAACGCCTGGTCGGTAGTCATGAGTTATTGTCTGCCCTGGAACATACGCATCTGAGCCCTCGTCCTCTGGCTCAT------------CAGGGAGAGAAGTGTACTGAATATTGGAATGGGATACTCTGAAAATTTGAAATCATCAAAAATTTAATGTGGTACGTTTTGGGTAC-----ACATAC--------GTTTCGGGCATCTGC-AAAAGGTTTTGAGCTGCAAGCAAGGCATTATTCACAAAAGTAGTTGCCAAACCATCTGAAAACTGAGCTTCAACAGA-----------TTCC--------------------ATCGGTGATTTTCCATT--CTCTTCTTCT-----GGATTTATTGGCT-------CTTTGTCAT-------------------------------TACTTTTTAC
s caeRem4.Crem_Contig0  444761 440 -  4500979 -----------CGAATGGATAA---------------------TCAGCCGCATCAGGGTAAACTTCTGGACGATAGTCATAAGTAATTTTCTGTCCTGGAATGTATTTA---TCGGTCTCAGCATTGGTGTCATCGGACTTCTGAGCAG---GTGCATCATTCGGCGCATTAGAGGAAATTTGCCTGCAA---TTAAAT--ACAATTAATTATTGTTATTTGTTTTCGGTGTTTGAAACATACCCTGCTGGGGCGTATGGGGCTATCCAATATCCTTGCGCTGTGAGTATAGCGTTTTCGACATACAACGCCGCCATGCTGTCAGAGAAAACAGCTTCAACAGGAGTCAGCTCCTTCCTGGATGAGCTTTCCATTAGTGATTGATCCTTTTTTATTGATTCGTCTTCTCCCTTGgattcatttgttttcttggatgcgtcctcttttttggaggcatggttttgttttgttgtttctttcttc
i caeRem4.Crem_Contig0 C 0 I 164
s caeSp111.Scaffold629  558725 365 - 33334924 ------CGATTCCAACTCATCACTG------------------TCACCATCATGAGAACGAGCTCCAGGACGATAGTCGTGAGTGACTTTCTGTCCAGGAACATACTCATCGTCGTTCTCTTCTCCGCTGTTGT-----TTCTTGGCAGATAGTGGAT----------ATGAGAAGTGACGATTctgaaagtttcattt--ttaattcacAACACGGATTAGTATACTGTGGT----ACTTACT-------GATTAGTTGGTCTGT--AAAGATTTTGTGCTGCTATCAAAGCATTGTTCACAAAAACAGTAGCTGAGTGATCGGAGAAACTTGCTTCAACAGTTGTCGTTTCCTTTCC--------------------ATCCGTTTTCTGttgctgcttcttcttcttcttcttattctttgaCT---TTGAACTCGTCAC-----------------------------------------
i caeSp111.Scaffold629 I 58 C 0
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I

a score=7083.000000
s ce10.chrX            3277504 74 + 17718866 GATTTGCACATCAAACTTGGCTTCAACAAAAGAGTTATCATCAGCTATCATCACAAGTTTTTCAATCG------------------TCGATT
s caeRem4.Crem_Contig0  445365 92 -  4500979 AACttcaacatcaaaattcgcCTCAACAGCTGTCTTGTCATCAGCTGCCATAACAAGTTTCACCACCGCTTCAGATTCCAAagaattcgatt
i caeRem4.Crem_Contig0 I 164 C 0
s caeSp111.Scaffold629  559090 77 - 33334924 ---TTGCACATCGAACTCGGCTTCAACATATGAACCGTCGTCATCAGTCATCAGAAGTTTGGCAAGCATTTCTG------------TCGAAT
i caeSp111.Scaffold629 C 0 I 40
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I

a score=112.000000
s ce10.chrX            3277578 34 + 17718866 ----------CAGTTGCGTTGTCTTTTCCCTTTCCTTGTTCGCG
s caeRem4.Crem_Contig0  445457 40 -  4500979 tttgtagttcCAACAGCGCAGCTGCTTTCCTTGCCTT----TCG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I
e caeSp111.Scaffold629  559167 40 - 33334924 I

a score=428.000000
s ce10.chrX            3277612 10 + 17718866 CTTTGCCGCC
s caeRem4.Crem_Contig0  445497 10 -  4500979 TAAAGCGGTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  559207 10 - 33334924 CTTGGCTGCc
i caeSp111.Scaffold629 I 40 C 0
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8375611 1330 + 21540570 I

a score=6685.000000
s ce10.chrX            3277622 38 + 17718866 ---TTTGCAGCTTTTTTAGCTTTTTTAATGGAAGTTTTAGT
s cb4.chrX             8376941 38 + 21540570 ---TTTGCTGCTTTTTTGGCTTTCCTGATAGCGGTTTTTGT
i cb4.chrX             I 1330 C 0
s caeRem4.Crem_Contig0  445507 36 -  4500979 ---TTTGTGGGTTTCTTGGGTT--CTTCTGGCATTTCTGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  559217 41 - 33334924 ttttcagctgcttttcttgctttccttctttcagctttagt
i caeSp111.Scaffold629 C 0 I 1448
e caePb3.Scfld02_0     1688918 2238 +  4147112 I

a score=-150.000000
s ce10.chrX            3277660 1 + 17718866 G
s cb4.chrX             8376979 1 + 21540570 C
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  445543 1 -  4500979 G
i caeRem4.Crem_Contig0 C 0 I 116
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e caeSp111.Scaffold629  559258 1448 - 33334924 I

a score=1070.000000
s ce10.chrX            3277661 49 + 17718866 GGTTTTGAGACCTCCTCCTTGTCTGTTGAAGAAGCTGAATACTCCTCTG
s cb4.chrX             8376980 49 + 21540570 TGTTTTGGAGGTCCATCACTTTCCTGTGAAGCGGATGAAGAGTCTTCCG
i cb4.chrX             C 0 I 7275
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e caeSp111.Scaffold629  559258 1448 - 33334924 I
e caeRem4.Crem_Contig0  445544 116 -  4500979 I

a score=0.000000
s ce10.chrX            3277710 65 + 17718866 CTGGAGTTGAGGGGAAATCTTTTTCCTTCTCGATATTGTACTTATTTGCATCCAGCGTAGTAAAC
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  559258 1448 - 33334924 I
e caeRem4.Crem_Contig0  445544 116 -  4500979 I

a score=-1092.000000
s ce10.chrX            3277775 552 + 17718866  
s caeRem4.Crem_Contig0  445660 684 -  4500979  
i caeRem4.Crem_Contig0 I 116 C 0
e caePb3.Scfld02_0     1688918 2238 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  559258 1448 - 33334924 I

a score=-2174.000000
s ce10.chrX            3278327 67 + 17718866 TTTTGCTCAATTTTGGTGTCTGATCCTTTCTCAATAGTTCCATCCTCGCGCTTTTCAG------CAATATGAT-------
s caeRem4.Crem_Contig0  446344 60 -  4500979 ---TTTTCAACTTTG------GTTCCTTTCTGAACTTGGC-----------CTTCCTGAGTGACTTGTTTAACATCTGAC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     1691156 64 +  4147112 TTCTGCTCAATTCCA------GATGTATTCTGCTCAGAGCAAGCACCA---TTCTCGGTTTGACCACTATGAT-------
i caePb3.Scfld02_0     I 2238 C 0
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  559258 1448 - 33334924 I

a score=6602.000000
s ce10.chrX            3278394 155 + 17718866 --TTTCAGATCCATAAGC--------AACTGGGAAAATATCATTTTCCGTTAGTGGAGCAGATGTAAAAACCAGTGAGGT-----CGGAGCAACTTCTTGCTG-AGCGCTTTGCTTGAAACTATTCATGAAGTCTATTCCAGATTGATGAGTCTCCAGGATACTGAAAGAA
s caeRem4.Crem_Contig0  446404 165 -  4500979 TCTTTCGGTCCAGATTGTGAAGATTCGCCGGGATAAATATCAGCTTCAGTGAGTGCGTGCGATTTGAAATGTTCATCGCT------GGAGCCACCATCTGATGTGCCATTTTCCTTGAACTGATTGATGAATTCGACAGCAGATCTGGTAACCTCCGGGtgactgaaattg
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  560706 155 - 33334924 --TTTCGGATCCGTTGCT--TGAATCGGCAGAATACAGTTCATCCTCAGTGAAAGGGCGAGAATCAAATGCCGGTCCTTT------TGATTCATTATT------GCCATTCTCTTTGAACTTGTTCATGAAATCAATCCCTGTTTGACCAGTTATCggatctctgaaaatt
i caeSp111.Scaffold629 I 1448 C 0
s caePb3.Scfld02_0     1691220 155 +  4147112 --------TGCCATTAGC--CGGAGGAGATGGGTACAAATcggcttctgtgagtggaacAGTGTCGAAAACAACTTCGTTGAAAGCTGAACGCCTGTC------ACCGCTCAACTTGAACTTCTCCAAGAAATCGATTCCAGACTGAGTAGCAATGGGGTCACTGAAAGAA
i caePb3.Scfld02_0     C 0 I 65
e cb4.chrX             8377029 7275 + 21540570 I

a score=87.000000
s ce10.chrX            3278549 68 + 17718866 AATACTGTGCTGCATAAATTTTTAAAACAATGTAGTTTACATTTTCTCAGTCGGTGGAGCAGGAACTG
s caeRem4.Crem_Contig0  446569 63 -  4500979 -gaaattaagTTCAAAACAATCGG----AAAACCACCCACATTTTCTCCATTGGCTTAGCAGGAATTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  560861 64 - 33334924 ggagCGTTGATGTAGAGGTTTTCA----TATAGAACTAACGTTTTGACAGCTGCTGGCGCTGGAGTCG
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1691375 65 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I

a score=7945.000000
s ce10.chrX            3278617 1575 + 17718866  
s caeRem4.Crem_Contig0  446632 1380 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  560925 1393 - 33334924  
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1691440 1676 +  4147112  
i caePb3.Scfld02_0     I 65 I 14802
e cb4.chrX             8377029 7275 + 21540570 I

a score=-2178.000000
s ce10.chrX            3280192 71 + 17718866 ---ACCGTT-TTTCGGTGACTCTATTAGTCCTGAAAATATACAAATTTTGCAAAATAAAGAAACGACAAAACTTT--
s caeRem4.Crem_Contig0  448012 55 -  4500979 CCCGCCGATGTTTCGATGCCCTT-CTTGGCCTGTAATtaa--caaat----gaga-------------aaatgtt--
i caeRem4.Crem_Contig0 C 0 I 5
s caeSp111.Scaffold629  562318 67 - 33334924 --ATCTGTTGTTTCTGTTGCTTT-TCCGccctgaaaatgaattaatt----gaaatgaata---taataaaaGTTAT
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I

a score=224.000000
s ce10.chrX            3280263 15 + 17718866 GAGAATAAGT---------------GAGAG
s caeSp111.Scaffold629  562385 30 - 33334924 GAGATTAAGTTGAGGAAATGCGGTAAAGAG
i caeSp111.Scaffold629 C 0 C 0
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeRem4.Crem_Contig0  448067  5 -  4500979 I

a score=-2410.000000
s ce10.chrX            3280278 42 + 17718866 AAAG----GGAAACCGTG----------GTTTTCCAAGAGCAAAAGAAGCATATAA------
s caeRem4.Crem_Contig0  448072 51 -  4500979 aaAG----ACAAGCCGTTTTCcaa----gtttt---aaaaacaaagCCGCAGAGaattatgg
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold629  562415 55 - 33334924 AGAGGTCCATAAATGGTGGAATAATGCTGACTT---GAAGGGAAAG--GAAAACAA--ATGG
i caeSp111.Scaffold629 C 0 I 54
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I

a score=-186.000000
s ce10.chrX            3280320 40 + 17718866 TTTTC--------TACAACGTTTGGCATAAGAGGCATGTT-ATTAGT-CT
s caeRem4.Crem_Contig0  448123 48 -  4500979 ttttttttgaaaatacaacTAATTGCTCA--ACGCACGTTGATTAGTATT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  562470 54 - 33334924 I

a score=4096.000000
s ce10.chrX            3280360 270 + 17718866 ATAACATGTTTAAGCATTCTTCAAAGCAA------TCAGTTTTGTGA------GCCCC---ATTATTTCCTGCCAGTGTCTGTGTGAAGAT--AAACAGTAGGCGTGATTGATGCTCCTACTGAATAGAAAGTGA--------AAACAATTGTGCGACACACG-------AATGTGCATAAGGGAAAAAAGCAGGTCACAGTTGAGAGGCAC--AAAGAAATGGAAAAAAGAGGGCAAAGAGAAATGAATAAGGCTCGATTACTTGAAACAGACGGCCTAG----AGCCGCAATGCGACCGCGCTGCT---
s caeRem4.Crem_Contig0  448171 235 -  4500979 ACAACAC----------------------------TCGTTTCTTTTATAACTAGGACA---TTTATTCA---------TATATGCAAACATCTAGACATTAGGCGCGATTACTGCTTTGTGAGAATGCAGAAGGG--------AAAGAAACGAAAGGAACCCG---GAGAAAAGTGCAC----GAAAGCAGCAGGTCGAtagaaagaagaat--gaagaaaagcgaggaaa-----aaagaga----------gctTGACGGCGTGATACGGACGGTTCAT----AGCCGCGATGCAGCCGCTTCGCTGTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629  562524 270 - 33334924 GTAACACATGAGAGTGTTCCGC---GCAAATCggttttcttctctgaaaattcggctcctttttatttc---------tcttttccaaaat------------tgcTATTG--GCGTCGAGGAGATGCaaaaagggtacgtatgaaaaagagaagagaaaacggaagaaaaaagtgaat----gaagaTAGCAGGTCGATGTGGAAAGGACTTGGcaggaaggagaagaag-----aaaaggagagga--GAGGCTCAATGGCGTGATACGGACGGTCCATAGGCAGCCGC-ACGCAGCCGCACCGCT---
i caeSp111.Scaffold629 I 54 I 1744
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I

a score=396.000000
s ce10.chrX            3280630 24 + 17718866 TATGAATATGTTGATGATAATATT
s caeRem4.Crem_Contig0  448406 24 -  4500979 CATAAATTTCCTCCTGTTGGTGTT
i caeRem4.Crem_Contig0 C 0 I 496
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  562794 1744 - 33334924 I

a score=0.000000
s ce10.chrX            3280654 327 + 17718866 TTTCTAGTAGTTGAAAAAACATCTATCTCGCTGGGAAAATTTTTTGTACTGGAAGTATCTGATTCACAGATTAAAAAAAAGCTTTCTGAAAATGAGATTCTCCACAAAATGCCTCTCACGTTTTACTAAAGAGAAAATGAAAATGGAAGCTTAAAAAGTTAGAAAGCTGTATAAAAATTTTATCTTAGAAATAAAACACCTGCATGTATGACATTTTCAGAAAATTCAGCTGTCTTCGCGTTTTCACAAGTTGTAAAAAAATTCTGACCACTATTGATAATTTAAAAAGTTGATAGCCTCTTTCAGATTAGTTCCAGAAAAAAATAG
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  562794 1744 - 33334924 I
e caeRem4.Crem_Contig0  448430 496 -  4500979 I

a score=4122.000000
s ce10.chrX            3280981 244 + 17718866 ATTTTTTTTCATTAAAATCGTTCTAGAAGGATTCCATAAAATAGATGCGAGA---------------TTACCAGGACAACCAGTCAAAAAGTCCGCAACGCA-GTGTGAACATGCACACACGACACCACACTTGACGACA-----CTTCACACCCGTTCCCCTGCAAAGAGCATTTGT-----------GACTTGTTAC------CACCAGAACGTTCAGGTTCAGAAGAACCTTGGTCATTGATGACACAATATTTTGAATCATCAAAAACAGTTTAAAAT
s caeRem4.Crem_Contig0  448926 271 -  4500979 attttttttctcaaaaatagctGTTCAAGTTTTAC-TAGAATAACCACGAGAATAATTTAAATCTTGTTACTcgctcaaaaacaaaaaaagtccGCAACGAAAGTGTGCAAA----CACAATACATCACATTTGGCGCCAACTGTCTCAGCATTTTTTGTTCT----AGGGTATTTGTAGGAATTTTGTGACTTGTTACGCAATGAAAAAGAACGGTTTGGTACAAATAAAACATGATCAGTGATGACAGAACTTCTTAAATA--CGAAAACTTGGTAAAAT
i caeRem4.Crem_Contig0 I 496 I 1479
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  562794 1744 - 33334924 I

a score=0.000000
s ce10.chrX            3281225 1083 + 17718866  
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  562794 1744 - 33334924 I
e caeRem4.Crem_Contig0  449197 1479 -  4500979 I

a score=673.000000
s ce10.chrX            3282308 20 + 17718866 AACTGATATACACAAAGA----CA
s caeSp111.Scaffold629  564538 24 - 33334924 AACTGATAAACGctaaaatttcca
i caeSp111.Scaffold629 I 1744 C 0
e caePb3.Scfld02_0     1693116 14802 +  4147112 I
e cb4.chrX             8377029 7275 + 21540570 I
e caeRem4.Crem_Contig0  449197 1479 -  4500979 I

a score=3068.000000
s ce10.chrX            3282328 24 + 17718866 -TTCCCACTTCCGATAACTCCAGTT
s caeSp111.Scaffold629  564562 25 - 33334924 tttcacaTTTATAACAACTTTAGTT
i caeSp111.Scaffold629 C 0 I 38
s caePb3.Scfld02_0     1707918 24 +  4147112 -TCCCCATTTGCGATAACTCCGTCT
i caePb3.Scfld02_0     I 14802 C 0
e cb4.chrX             8377029 7275 + 21540570 I
e caeRem4.Crem_Contig0  449197 1479 -  4500979 I

a score=-486.000000
s ce10.chrX            3282352 38 + 17718866 --TGCCGATTTTTTTCCGGTCTGTCGGCAACCTTTGCATA
s caePb3.Scfld02_0     1707942 29 +  4147112 AATGTCG--CCATTTCCAGTATATGGAAGA---------G
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8377029 7275 + 21540570 I
e caeSp111.Scaffold629  564587 38 - 33334924 I
e caeRem4.Crem_Contig0  449197 1479 -  4500979 I

a score=123.000000
s ce10.chrX            3282390 2 + 17718866 TG
s caeSp111.Scaffold629  564625 2 - 33334924 TC
i caeSp111.Scaffold629 I 38 C 0
s caePb3.Scfld02_0     1707971 2 +  4147112 TC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8377029 7275 + 21540570 I
e caeRem4.Crem_Contig0  449197 1479 -  4500979 I

a score=23611.000000
s ce10.chrX            3282392 70 + 17718866 TTTGAGCTTTCTGAACTCGTGG--TTTTTCACGCATTTAATCATAAAATTCGAATATAACTGTGTTGATTAA------
s cb4.chrX             8384304 51 + 21540570 TTTGAACCTTGTGAACTCGTGA--TTTTCCGCAAACTC-------------------------GCCGCGTTGTGACCG
i cb4.chrX             I 7275 C 0
s caeRem4.Crem_Contig0  450676 70 -  4500979 TTTGAGCCTCGTGAACTCGTGA-TTTTTCCACACACTCGATAGTAAAATGCCGAT-------TGTTGGCTTATGACCG
i caeRem4.Crem_Contig0 I 1479 C 0
s caeSp111.Scaffold629  564627 71 - 33334924 TTTGAACCTCATGAACTCGTGATTTTTTCCACTCATTTGCTAGTAAAATGTCGGT-------TGTTGGCTTATGACCG
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0     1707973 71 +  4147112 TTTGAACCTCGTGAACTCGTGATTATTTCCACACACTTCATAGAGAAATGCCGAT-------TGTTGGCTTATGACCG
i caePb3.Scfld02_0     C 0 C 0

a score=41881.000000
s ce10.chrX             3282462 171 + 17718866 AAAATGCAGAGTCCACAATTTTC---------GCGACGCGGGTAAATGTACAAGATGACCACATCAACATATGTACATGGTCTTTCGA-------------TAGAAAG-GGGTTGGGCTTTTTGCAGGAAATAG--TGTTCTAGATAACAGTCATTTTACCGTAA-CCTCAT-----------------------TTCTGCACACCAGTTCAGTTTC----ATT
s cb4.chrX              8384355 167 + 21540570 AAAATGCTGAGTCCACAATCTCCTATCAATT---------------TGTGCAAAGTGGCCATAGAAACATATGTAAC--GCCTTTCGT--------TGCGGTAAAATTGGGGGTGGAGCATGGAGATGGGAAGGCACGTTCTCGATAAGAGTTCTGGTACAGTAT-CCAACG---------------CTTTG---CTTGGGAA---------GTTTC----ATT
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   450746 174 -  4500979 AAAACGCTGAGTCTTcaattttc--ccgattttcttTGC---TAAATGTACAAAATGACCAGAGAAACATATGTAAG--GTCTTCCGA--------TAGCGAAAAAGT-GGGCTGGGTCTTGAGCGAGTGAATG--TGTTCTCGATAAGAGttcttctacagtaa-ccc--------------------------cttTCGAAACCAAGTT-GCTTC----ATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   564698 168 - 33334924 AAAACGCTGAGTCCACAATTTTC--TTCTACTCCTCTGC----AAATGTACAAACTGACCACAGAAACATATGTAAA--GTCTTCCGA-------------TAAAAAGGTGGGTTgggtttgaagaaaaaaaag--tgttctcgATAAGAgttcttctacagtaa-cccaca-----------------------ctttcaacat-------ttttc--ctatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1708044 182 +  4147112 AAAATGCTGAGTCcataattttt--ctctctttcgaTGC-----AACGCACAAGCTGACCAGAGAAACATATGTAAA--GTCGtccgagagagagagagaggaaaaaagtggGTGGGGTTTG-CGGGAAAAAAG--TGTTCCCGATAAGAGTTCTTTTACAGTAACCCCGCA-----------------------CTCGCAACAC-------TTTCCGAATATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  506625 180 -   823664 AAATTGCTGAGTTTACAATTTGC----------------GGGAAAAGATGCAGAGAGACCAGAGAAGCACAGATGTA--ATTTCTTGA--------TATGGGGTGGGG-TGGGTGGCGTTTA---GTCAAAAAG--TGTTCTTGATAAGAAAT-TTGTACCGTAA-CCCCTCAAGTgttgcatttcattttgattcttttgattct------gtttc----att
i caeJap4.Scaffold18194 N 0 C 0

a score=-2162.000000
s ce10.chrX             3282633 27 + 17718866 ------TAACTTTTCTATCACACCATTA------GCAAT
s caeRem4.Crem_Contig0   450920 27 -  4500979 -----------CTCGTTTCA-GGTGCTACACGGAGCAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   564866 32 - 33334924 ------tcatttttatttcg-actACGAGGCGCTGCGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1708226 32 +  4147112 ------TCATTCTCACTTCA-AGTACGAGTCGGTGCAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  506805 35 -   823664 tctagttcaatttttcctc--attaccaatt--tGCAAG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8384522 28 + 21540570 I

a score=75714.000000
s ce10.chrX             3282660 224 + 17718866 CATGTTATTCAATGCGCCTCCGAATATTATTTACATGCTATTGTGTTTTTTACTGATGGATATCAGCAATACAGTATTAATGCTCCTTTTTCCAACTTTGGCAGATATTATAAATGAGATGAACAATCACACATTGTCAGCTCATTTTGGAATTGAACCGACTATTGCAAAGTGAGT--------------------------------------TTTCGAAT-----------GTGAGT---TCCCAAGCACTTATATATGTTT-----------------TAGTGTCAATG-------
s cb4.chrX              8384550 219 + 21540570 AATGACGTTCTCGGTACCTCCGAATGTTCTATATATGTTATTCTGTTTTGTGTTGATGGATCTCATCAATACTATCACCGTACTAATATTTCCAACATTAGCAGCTACAATAAATGAAATGAATAACCACACACTAAAATCTCATTATGGAATTCAGCCTACAGATGCAAAGTAAGT--------------------------------------catgaaat---c-------gaaaat---tttaaag------ttgagattt-----------------caattttcagt-------
i cb4.chrX              I 28 I 7
s caeRem4.Crem_Contig0   450947 225 -  4500979 TATGAAATTCTCAATACCTCCGAATTTGCTATACATGTTATTTTGCTTTCTTCTAATGGATCTTATAAATCAAATCACGCAACTGACATTTCCAACACTGGCGGAGACTATCAATGTTATGAATAATCACACACTAATTTCTCACTATGGTATTGATCCAACACCTGCCAAGTAAGTATA-----------------------------------TCTGATATGGAC-------TAGAAC---TGTAAAGAA---CTTATTATTT--------------------GTTTCAGT-------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   564898 221 - 33334924 CATGAAATTCTCAATTCCtcctaattttttatatttattattCTGTTGTCTTCTGATGGATCTGATTAATCAGATCCCGCAACTCACATTCTCGACATTGGCTGAAATAATAAACGTGATGAATAACCATACGTTAGTTGCTCATTATGGAATAGAAGCAACGACTGGAAAGTGAGT--------------------------------------TTCGTCATATGTATGCCCgcagaat---tttgaatat-------------------------------aatgTTTGGT-------
i caeSp111.Scaffold629  C 0 I 156
s caePb3.Scfld02_0      1708258 218 +  4147112 CATGAAGTTCTCTGTCCCTCCGAATATTCTCTACATGTTATTATGCTTTTTGTTGATGGACTTGATTAATCAGATTCCGCTTATGACATTTTCTACATTAGCTGATATCATTAATGAGATGAATAATCATACATTGATCTCACATTTTGGATTAGAAGGGTCAACCGCAAAgtaatt--------------------------------------tcc----------------caaaat---ttccaaaat-tcatcGAGCTGA-----------------CAATGCCAATT-------
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194  506840 292 -   823664 TATGAAGTTTTCAATTCCACCTAATCTCGTCTATATGCTATTCTGTTTTTTACTAATGGATATTATTAATCAAATTCAAATTACAACATTTGCAACGCTAGCAGATACTATCAATGTTATGAATAATCACACACTGATTACTCATTTCGGAGTTGAACCAACTACTGCGAGgtgaataaaattttaaaaggttAACTGATAGAGAGttaaattgttttaatttttgt-------gaGAGTGCGTTTAAAAGA-TAATAAATATGTAATAGATTCCATATTTACTGTTTTCAGTATATCTA
i caeJap4.Scaffold18194 C 0 C 0

a score=187910.000000
s ce10.chrX             3282884 479 + 17718866  
s cb4.chrX              8384776 476 + 21540570  
i cb4.chrX              I 7 I 62
s caeRem4.Crem_Contig0   451179 464 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold629   565275 460 - 33334924  
i caeSp111.Scaffold629  I 156 C 0
s caePb3.Scfld02_0      1708490 460 +  4147112  
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18194  507132 451 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9774.000000
s ce10.chrX             3283363 69 + 17718866 GCATTTTTCTAGC------TTTCCGCCTTGCAGA---AAATAATGATAACCGTCTGACAATCACAAACG---GTTA-----TGAC-G
s caeRem4.Crem_Contig0   451643 75 -  4500979 -------CCAAGTTTCATTTTCCCGCGCTGCAAAATTGAGTGTTGATAACA----GATGATCAGAAATGTAGTTTGCAAAATGAC-G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   565735 71 - 33334924 -----TTTCAAGCTGAATTTTTGCGCGCTGCAAGAACAAGTAGTGATAACA----GGTGACCGGAATCAT--CCTG-----TCACAG
i caeSp111.Scaffold629  C 0 I 17
s caePb3.Scfld02_0      1708950 68 +  4147112 ----CCTTCAAGTTTAATTTTTGGGCGCTGCAAA-------ATTGATAACA----GGTGACCGGAATTGC--TTTG-AAGATGAC-G
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18194  507583 25 -   823664 ---------------------------------------atttTGTTAACT--TTTATGGCTGGTG---------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8385252 62 + 21540570 I

a score=104496.000000
s ce10.chrX             3283432 321 + 17718866 TTTTGCA-----------------GTGGGATCTAAT------GAT------AAAATATGAATAAAAACGAAACTATCAAAACCA----------------TTCAA--GTTT----TACAGGTTTTCAATTGCAACACCAAATGTTCTCGGAAGGGCAAACACATGGGTTATCTTCCCGTTGGCAGTTTTGATGAGGTTGATAGTTCT----CTTGAAACAAGAATATA---AAAAATCTTT------TTGCAGTTCTACAGTAATTTTTTTCATGACTCTGCGGTTACCAGAGTCGCCAAAATGGCTAGTCAGACAGAATAAGATTGAAGAAGCGTCACGAGCGATTGAGTTTTACCATGGCGAAAACTGTTGTCTGAGTAAGAA--
s cb4.chrX              8385314 290 + 21540570 ttttgtagttattgGAACCTTGACGCCGGATGTAGA------GATAATAAAAAGATCGTTAAAT----ATTTCCAGAAGAG----------------------AATAGTTT----TGCAGGTTCTCCGTTGGTTCACCAAGTGCCCTCGGAAAACAGAACACATGGTTCATCTTCCCATTAGTCGTTATCATA----------------------------------------------------------AGTTCGATAGTGAATTTCGGCATGGCTGCTCGACTACCAGAATCTCCGAAATGGCTAGTTCGACAAAATCGGTTGGAAGAGGCGACACAAGCCATAGAGTTTTATCAAGGCGACAGCTGCAATTTGAGTAAGA---
i cb4.chrX              I 62 C 0
s caeRem4.Crem_Contig0   451718 338 -  4500979 CCTTGTGGTTTTGTTAACTT----GCAGGATGTAGt------gat------aaaatatttaaattggCACAGTCATGAAAACTATA--------------ACTAACAAGTT----TGCAGGTTTTCGGTTGCAACTCCAAATTTGCTCGGAAAAGAGAATACATGGTTTATCTTCCCATTAACTGTACTGATATGGTA-AAAA---------TTGAACGTCGAGTCCA---AAAAATATCTAATTATTTATAGTTCAATCGGAAATTTTGCGATGGCTGCCCGGCTACCAGAATCTCCAAAATGGTTGGTCAGACGGAACAGAATGGATGAAGCAGCGCGGTCCATTAAATTCTATCACGGGGAAAATTGTAGTTTGAGTAAGat--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   565823 341 - 33334924 --------------------TATTTTGACTTGCAACATCCTTGAT------AAAGAATGAAGATCAGAATCATCATAAAAACTACAAGAAGCTGTCAATCTTCAATTTAAT----TGCAGGTTCTCTGTTGGCTCTCCGAGTGTACTTGGAAAACCGAACACATGGTTTATCTTTCCACTGGCTGTCATGATAAGGTAGGAGG---------TCTGATtgaaagctca---aaaaactacTGATAACTTACAGTTCGTTAGTGAACTTTGCAATGGCGGCTCGTTTACCTGATTCTCCGAAATGGCTTGTGAGACAGAATAGAATGGAAGAAGCTGCGAAATCAATAGAATTCTATCATGGAGAAAACGTTTGTCTTAGTaag----
i caeSp111.Scaffold629  I 17 C 0
s caePb3.Scfld02_0      1709036 338 +  4147112 --------------------TCTTGTAGGATGTAAC------GAT------AAAGTATACAAAATTTAATTG-CATTGAAACAAGTCACAGATGTCAA--CTTGACATGATCTTCTGCAGGTACTCTGTGGCGACTCCAAATGTACTCGGAAAATCGAACACATGGTTCATATTCCCATTGACCGTCATGATAAGGTTGGTGG---------CCGAATTGACAGCCGa---aaaaaaGactgataattttcagttcgGTCATCAACTTCGCAATGGCTTCAAGACTCCCCGAGTCTCCAAAATGGCTAGTTAGGCAGAATAGAATGGAAGAAGCAGCACAATCTATTGAATTTTATCATGGGGAGAATTGTTGCCTAAGTGAGGG--
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold18194  507608 320 -   823664 ------------------------------ttttac------gac------aaaa-----aaat----gcaaccaaaaaaatatttat------------tcttGCGAAAT----TACAGGTTCTCAGTTGGCTCTCCGAATGTTCTCGGAAAAACGAACACCTGGTTTATCTTTCCACTTTTTGTCATGATAAGGTGAGAAGTCATAATCAACAGAGAAAAAGCGCAGTTAAAAATCATTGATAACTTCCAGTTCGTGTTTCAACTTTTGCATAACAGCGCGATTGCCAGAGTCTCCAAAATGGCTTGTGAGGCAGAACAGAATGGAAGAAGCTGCAAGAGCAACGGAGTTTTATCACGGGCATGACTGTTCTATAGGTATAAGAa
i caeJap4.Scaffold18194 C 0 I 13

a score=-3814.000000
s ce10.chrX             3283753 25 + 17718866 TTAGGCTTATTAGTTGTGGTTTAGA
s cb4.chrX              8385604 18 + 21540570 -GAA------CTATTGCGAAAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452056 15 -  4500979 tgaa----------taagaagaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   566164 12 - 33334924 ---a----------tcagaagaaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1709374 15 +  4147112 AGAA----------TGTGATGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507928 13 -   823664 I

a score=100492.000000
s ce10.chrX             3283778 272 + 17718866 AA--------TTTTT--GAAATTAT---------TTTTAGATGAAGTCGTTTCGTCATACATAAAGGAGAAGAATTTGACACAGGAAGATCAAATTTCCCTCCGCCAAGTTTGGGAGAACGATACAATGCGCGAGGTTTTAAATGAGCA-------------------GTACCCG---AAAATGTAGTATT----TTTCAGGCTTTAAAAGTGCTCTGCTCAGTTTCACTGTTTCTAGTTCTCGATTCTGGAGTTATTCAAGGTGTCTACACAGTACTCCTCCACAAAACTGCCGGATTCACAGTTCAAGAAGTGAA
s cb4.chrX              8385622 238 + 21540570 AACTCATATGTTGGACACAAATTAC-------------AGATGATGTTCTGACATCTTACATAAAGGAGAAGAATTTGACACAAGAGGATAAAATCTCATTTCGGCAGGTGTGGGAGAATGACACAATGCGTG------------------------------------------------------------------AGGCGCTCAAAGTTCTTTGCTCCGTTTCTTTGTTCctgattctggattctggagcTGTTCAAGGAACTTATACAATTCTTCTACACACCACTGCTGGGTACACAGTTCAAGAAGTatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452071 245 -  4500979 aa---agaagttgaGATCACACTAC---CCACTGATTTAGATGACGTGATGACATCATTCATCAAGGAGAAGAATCTGACAAAGGAAGATAGAATCTCTATTCGACAAGTATGGGAAAATGACACTATGCGGG------------------------------------------------------------------AAGCTCTGAAAGTTCTTTGTGCCGTCTCACTATTTCTGATTCTGGACTCAGGAGCCGTCCAAGGAACATACACAGTTCTTTTGCACAAAACAGCGGGATTCACTGTTCAAGAAGTAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   566176 284 - 33334924 aa--------cttcattcaatgaat------aaaatttagATGATGTGATGACATCCTTCattaaagagaaaaacttgacAACGGAGGACAGAATCTCACTCAAAGAAGTTTGGGAAAACGACACCATGAGAGAGGT------TGAGCTCATTGTTAa----------ggatcaa---aaaaatttatagaaaaattccaGGCTCTGAAAGTATTATGTTCTGTTTCcatgtttttaatttttgattccgGAGTGATTCAAGGGACTTACActgttcttcttcataaAACAGCTGGTTTCACTGTTCAAGAAGTAGG
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1709389 282 +  4147112 AC--------TTGCA--CAGTAtat-------gttttcagatgatgtcCTAACTTCCTatgtaaaagagaaaaacttgaCTTCAGACGATACAATCTCAATGAAAGAAGTCTGGGAGAATGACACTATGCGAGAGGT------GAAAAT--TTCTTAAAGGAGTTTGTGAATCCA---AAAACT-------ATGATTTCAGGCACTCAAAGTACTATTTTCTCTATCACTGTTCCTGCTTCTTGATTCTGGAGTAGTTATGGGAACATACACAGTTTTACTTCACAAAACCGCCGGTTTTACTGTTCAAGAGGtaca
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18194  507941 279 -   823664 -------------------aagtaCAGTAAACAGTTTCAGAGGAAAAACTATCATCTTttatcaaagaaaaaaacttgaCTATTGAAGATAGAATATCTCTGCGACAAGTATTGGAAAATGACACATTAAGAGAGGTTTGCAATGTGAA-------------------TaactaaattaaaattatCCCAAATTAATTCAGGCTCTAAAAGTACTTTTCTCAGTTTCACTTTTTCTCATATTTGACTCTGCATCAGTCCAGGGCACTTATACCGTACTACTTCACCAGCGCGCTGGTTTCACCGTCCAGGAAGTaat
i caeJap4.Scaffold18194 I 13 C 0

a score=-8859.000000
s ce10.chrX             3284050 19 + 17718866 ---ACAATACTGCTACTCACTT
s cb4.chrX              8385860  3 + 21540570 -------ttc------------
i cb4.chrX              C 0 I 440
s caeRem4.Crem_Contig0   452316 14 -  4500979 -------ATCTAGTggttatt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   566461  9 - 33334924 -------------Agaatattt
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold18194  508220 19 -   823664 aaaatgattttaaaaattt---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1709671 23 +  4147112 I

a score=-4054.000000
s ce10.chrX             3284069 16 + 17718866 -TTAATCTTTA--ATATTT
s caeRem4.Crem_Contig0   452330 16 -  4500979 -tgaaaataga--aagcat
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   566470 18 - 33334924 -tcaacaaaaaataggttc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1709694 16 +  4147112 -TCAATCTGAA--CAGTTT
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18194  508239 16 -   823664 gaggaaattga--cattt-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8385863 440 + 21540570 I

a score=108705.000000
s ce10.chrX             3284085 255 + 17718866 T-----TCCAGGCTTTGAATGTAAATCTAGTACTTGTAATAATCTTCCTCCCAACCAGATTTGTTGGAACATACATCATCGACCACTTGGGAAGGCGACCAGTTATGTTGATTGCAGGAATAATTGTGTAAGTTTTGATTACAAGATTCAGTAGATGGTA---AAATTTACTTT-----------CAGATATTCGAAAACTTGGTTGATGTTATCAACTCAATTTATAATTTATTTTGTTGGTCCAAGTGTTCTGACCAAATGGTTATGTAAGT
s cb4.chrX              8386303 253 + 21540570 t-----tccAGACTATGAATATCAAATTGATTCTTACAATCCTTTTCTTCCCAACTCGTTTCATCGGAACTTATCTTCTGGATGCACTAGGAAGAAGACCAGTTATGGCAATTGCTGGAGTGATAGTGTAAGTTCTTA----TATGTCCCCTGAATAGGC---AAAATTGATATTG---------CAGCTATTCAAAAACTTGGCTCATGCTTATCACTCAAATTATCATTTATTTTGTTGGACCTTCTCTTCTTACTAAAATTTTATGTAAGT
i cb4.chrX              I 440 I 6
s caeRem4.Crem_Contig0   452355 254 -  4500979 --------cagacaatgaaCATCAAACTTATTCTTGCTGTTGCCTTTTTTCCAACCCGATTTGTTGGAACCTACATTATCGAAGCACTGGGAAGAAGGCCAGTCATGTTCATTGCAGGCGTAATTGTGTAAGTAAACAGCCCTGTTTCTACGCAAAAGTT---CAGAATTGTACTT---------CAGATACTCAAAAACCTGGCTCATGCTTGCAACACAGTTTGTTATCTTCTTTACCGGACCAAGTTTGttgacaaaaattatgtgtaagt
i caeRem4.Crem_Contig0  I 9 I 31
s caeSp111.Scaffold629   566488 259 - 33334924 TTCTCATTTAGACTATGAATTTGAACCTGATTCTGGCTGTGGTTTTCTTCCCTACAAGATTTATTGGTACTTATATCATTGATTCTTTGGGTAGAAGAGCGGTTATGGGGATCGCTGGAGTTATTGTGtaag----------tttgatttttagagagTATTACAATCAACCACTG-----TTTGAAGATATTCCAAAACATGGTTAATGTTATCGACCCAGGTTATTATATATTTTGTTGGACCAAGCACTTTGACAAGGGTTATGTGTAAGt
i caeSp111.Scaffold629  C 0 I 40
s caePb3.Scfld02_0      1709710 255 +  4147112 T-----TGTAGACTATGAACTTGAACTTGGTACTAGCAATCTTATTCTTCCCAACAAGATTTATCGGCACGTATATTATTGATACACTTGGAAGAAGAGCAGTAATGATGTTAGCTGGGATCATTGTGTA--------------TGGCCACTAGATATCCTAACAATTTTATATCGGGATTTTTCCAGCTATTCAAAAACGTGGCTCATGCTTTCAACACAGTTTGTGGTATACTTTGTAGGGCCTAGTACTTTGACCAGAATCATGTGTAAGT
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold18194  508255 255 -   823664 ------tttaggCAATGAACATTAATTTGATACTAACCGTTGCGtttttccccacaaagttCATTGGGACATACATAATCGATGCTCTCGGAAGAAGGCCTGTCATGGCAATCGGTGGAATCATTATGTGAG----------TTGAGGatctaaaaattg---aaagagagtttgtggttttttttagaTACGCAAAGACTTGGTTGATGCTGGCCACTCAAACAATAATTTACTTCTTTGGTTCAAGTGCTCTGACTAGAATAATGTGTAAGT
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX             3284340 8 + 17718866 TGAAAAAA
e caePb3.Scfld02_0      1709965 34 +  4147112 I
e caeJap4.Scaffold18194  508510 0 -   823664 C
e cb4.chrX              8386556 6 + 21540570 I
e caeSp111.Scaffold629   566747 40 - 33334924 I
e caeRem4.Crem_Contig0   452609 31 -  4500979 I

a score=750.000000
s ce10.chrX             3284348 23 + 17718866 TTTGGAAATGTTTATTAGAATTA
s caeJap4.Scaffold18194  508510 19 -   823664 ----gagatttttctaaaaatta
i caeJap4.Scaffold18194 C 0 I 889
e caePb3.Scfld02_0      1709965 34 +  4147112 I
e cb4.chrX              8386556  6 + 21540570 I
e caeSp111.Scaffold629   566747 40 - 33334924 I
e caeRem4.Crem_Contig0   452609 31 -  4500979 I

a score=0.000000
s ce10.chrX             3284371 489 + 17718866 TATTAGAAATAGAATGATGAAAAAACGTTTTCAACGCTATTAAAAGGTAAAAATTTTGGTCGAGTATTAAGACCACTGGCGCTCAGACAGTAGCAGTGCCTGTATATATTGTGTTTCATTTGTCTCAGAATTGTTTATAAGACGCCAAGAAAAAAATGTTTTGCATTTTTTGCACTTTATCCTGTTAAATACCTACATTAATTAAATAAACTTTGAAATTTATTGCATATTGGGTAGTTTTTGACGAAAAATGTTTTTTATAACAGCTGCGACTAATTGGGAATTTTTTGTTTTTTTTTTTTGGTAAAATAGGCTTTTTTTAAATTTTTAACTGCCAAAACGCATTTTTAGAACATTTCTAAAAAATAAAATTATAACATTTGGTCGTCTGGGCCAGTCTAGTTAAGGAAACACGGATAAATTCTGCTTCATCTGTGCAAAAGAGAAATAAATGGCTGAAAATAAAACAGTTTCAGTTACTTCTATACA
e caePb3.Scfld02_0      1709965  34 +  4147112 I
e caeJap4.Scaffold18194  508529 889 -   823664 I
e cb4.chrX              8386556   6 + 21540570 I
e caeSp111.Scaffold629   566747  40 - 33334924 I
e caeRem4.Crem_Contig0   452609  31 -  4500979 I

a score=91.000000
s ce10.chrX             3284860 1 + 17718866 T
s cb4.chrX              8386562 1 + 21540570 T
i cb4.chrX              I 6 C 0
e caePb3.Scfld02_0      1709965 34 +  4147112 I
e caeJap4.Scaffold18194  508529 889 -   823664 I
e caeSp111.Scaffold629   566747 40 - 33334924 I
e caeRem4.Crem_Contig0   452609 31 -  4500979 I

a score=-741.000000
s ce10.chrX             3284861 26 + 17718866 CATGTAGCTTCTACTCAACTATAGAT----
s cb4.chrX              8386563 19 + 21540570 CATCTATCTTGTA-------ACACAA----
i cb4.chrX              C 0 I 3
s caeJap4.Scaffold18194  509418 28 -   823664 CATTCATCTTATTTTCAA--ACCGATAATT
i caeJap4.Scaffold18194 I 889 C 0
e caePb3.Scfld02_0      1709965 34 +  4147112 I
e caeSp111.Scaffold629   566747 40 - 33334924 I
e caeRem4.Crem_Contig0   452609 31 -  4500979 I

a score=-740.000000
s ce10.chrX             3284887 4 + 17718866 ---TTTT
s cb4.chrX              8386585 4 + 21540570 ---ATTC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   452640 4 -  4500979 ---tttc
i caeRem4.Crem_Contig0  I 31 C 0
s caeJap4.Scaffold18194  509446 6 -   823664 TTGATT-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1709965 34 +  4147112 I
e caeSp111.Scaffold629   566747 40 - 33334924 I

a score=327.000000
s ce10.chrX             3284891 4 + 17718866 TTTT
s cb4.chrX              8386589 1 + 21540570 ---C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452644 1 -  4500979 ---c
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      1709999 4 +  4147112 TTAC
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold18194  509452 4 -   823664 TTAC
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   566747 40 - 33334924 I

a score=65894.000000
s ce10.chrX             3284895 98 + 17718866 AGATATTGGTGTAGAATGTCTATCTGAATCATCATTAGCCACTGGAGTCACTTCTCTCGGAATTCTTTTCATCTCCGAACTTTTCCCTCCATCAGCAC
s cb4.chrX              8386590 98 + 21540570 AGATCTTGGCGTAGAAGCGTTATCCAATTCAACGTTTGCGACCGGTGTAGCTTCTCTGGGTATTCTATttatttctgaactttttccaCCGTCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452648 98 -  4500979 AGATGTCTCCGTTGAATGCTTGGCAGATTCAACATTGGCAACTGGTGTGGCTTCTCTTGGAGTGCTCTTTATTGCTGAACTATTTCCTCCATCTGCAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   566787 98 - 33334924 agaTATTGCTGTGGAATGCTTATCCGAGTCTACCTTGGCAACAGGTGTTGCCTCTTTGGGAATCCTTTTCATTAATGAACTGTTCCCTCCATCTGCTC
i caeSp111.Scaffold629  I 40 C 0
s caePb3.Scfld02_0      1710003 98 +  4147112 AGATATTGCTGTTGAGTGCTTGTCCGAGTCAATGTTCGCCACCGGTGTTACATCTTTGGGTATACTCTTCACTTGCGAACTTTTCCCTCCATCTGCAA
i caePb3.Scfld02_0      C 0 I 4597
s caeJap4.Scaffold18194  509456 98 -   823664 AGTTATTAGCGTTCAATGTCTTGCCGAAGCAATCCCGGCAACTGGAGTCACTTCGCTGGGAATTCTCTTCATCACCGAACTATTTCCACCATCGGCAA
i caeJap4.Scaffold18194 C 0 C 0

a score=12964.000000
s ce10.chrX             3284993 57 + 17718866 GAACCTGTGTTGCACAAGTAAGTTTTTTCTC-TGATAAAC-----AATTTTATTGACTATTTA
s cb4.chrX              8386688 57 + 21540570 GAACGACTGTTGCACAGGTAAGAGCACATTTATGAT-AAC-----TTTCTCTTTCCAATCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452746 57 -  4500979 GAACATCAGTTGCACAAGTAAGTACAGTTTTATGAT-AAC-----TCTTTTGCTGACATAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   566885 53 - 33334924 GAACATCGGTTGCACAAGTGAGAGTatttc----at-cac-----ttttcccATCAACTCCTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1714698 56 +  4147112 GAACATCGGTTGCACAGGTAAGTGCAACTTC-CGAT-AAC-----TGCTCTGCTGACATACTC
i caePb3.Scfld02_0      I 4597 C 0
s caeJap4.Scaffold18194  509554 59 -   823664 GAACATCAGTTGCTCAAGTCAG---ATTTTcacagc-aacaaaaaattttaactaacatttta
i caeJap4.Scaffold18194 C 0 I 7

a score=204339.000000
s ce10.chrX             3285050 577 + 17718866  
s cb4.chrX              8386745 559 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   452803 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   566938 546 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1714754 561 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509620 585 -   823664  
i caeJap4.Scaffold18194 I 7 T 3368

a score=23063.000000
s ce10.chrX             3285627 54 + 17718866 AACAAAACCTGCGATGTTTGCTTGCTTCATTGCCTTTTT---TGTACATATTGTCAC
s cb4.chrX              8387304 53 + 21540570 gctGATAAATTTAA---TTTCTTGTTTC-ATGCACTTTTGTATGTACATATTGCCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453359 54 -  4500979 GCTGATAACGGTGATACTTGCTTGCTTCAATGCACTTTT---TGTACATATTGTTAC
i caeRem4.Crem_Contig0  C 0 I 304
s caeSp111.Scaffold629   567484 54 - 33334924 ACTGATAACCGTGATGCTTGCTTGCTTCAATGCACTTTT---TGTACATATTGTTAC
i caeSp111.Scaffold629  C 0 I 287
s caePb3.Scfld02_0      1715315 50 +  4147112 GCTGATAACTGTGATGCATGCTCTC----ATGCACTTTT---TGTACATTTTGTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510205 3368 -   823664 T

a score=364.000000
s ce10.chrX             3285681 29 + 17718866 -GTCTCTCTTTAAATAAATGATTTCTTCGA
s cb4.chrX              8387357 24 + 21540570 -AATTTCAATGaagta-----ttttttaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1715365 28 +  4147112 GACTTTTGGTTAAATAAA--GTTCTTTCGA
i caePb3.Scfld02_0      C 0 T 7177
e caeJap4.Scaffold18194  510205 3368 -   823664 T
e caeSp111.Scaffold629   567538 287 - 33334924 I
e caeRem4.Crem_Contig0   453413 304 -  4500979 I

a score=60.000000
s ce10.chrX             3285710 2 + 17718866 AT
s cb4.chrX              8387381 2 + 21540570 gt
i cb4.chrX              C 0 I 207
e caePb3.Scfld02_0      1715393 7177 +  4147112 T
e caeJap4.Scaffold18194  510205 3368 -   823664 T
e caeSp111.Scaffold629   567538 287 - 33334924 I
e caeRem4.Crem_Contig0   453413 304 -  4500979 I

a score=0.000000
s ce10.chrX             3285712 3726 + 17718866  
e caePb3.Scfld02_0      1715393 7177 +  4147112 T
e caeJap4.Scaffold18194  510205 3368 -   823664 T
e cb4.chrX              8387383  207 + 21540570 I
e caeSp111.Scaffold629   567538  287 - 33334924 I
e caeRem4.Crem_Contig0   453413  304 -  4500979 I

a score=855.000000
s ce10.chrX             3289438 25 + 17718866 TTCGAACATTAC-AGCTTCATTCTTC
s caeSp111.Scaffold629   567825 26 - 33334924 TCCAATTGTTGCGACTTTTTCTCTAC
i caeSp111.Scaffold629  I 287 C 0
s caePb3.Scfld02_0      1708216 25 +  4147112 TCCGAATATTTC-ATTCTCACTTCAA
i caePb3.Scfld02_0      T 7177 C 0
e caeJap4.Scaffold18194  510205 3368 -   823664 T
e cb4.chrX              8387383 207 + 21540570 I
e caeRem4.Crem_Contig0   453413 304 -  4500979 I

a score=-1023.000000
s ce10.chrX             3289463 3 + 17718866 AAT-
s cb4.chrX              8387590 3 + 21540570 -aaa
i cb4.chrX              I 207 C 0
s caeSp111.Scaffold629   567851 3 - 33334924 -ATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1708241 3 +  4147112 -GTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510205 3368 -   823664 T
e caeRem4.Crem_Contig0   453413 304 -  4500979 I

a score=-2804.000000
s ce10.chrX             3289466  2 + 17718866 AA---------
s cb4.chrX              8387593  2 + 21540570 ag---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453717  2 -  4500979 aa---------
i caeRem4.Crem_Contig0  I 304 C 0
s caeSp111.Scaffold629   567854  2 - 33334924 ca---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1708244 11 +  4147112 CGAGTCGGTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510205 3368 -   823664 T

a score=67374.000000
s ce10.chrX             3289468 134 + 17718866 AACTATGAAGTTTCCGGTGACCACGAGAATTCTTTATGTATTGATATGCCTGTCTTTTTTGGATGTTCCGTGTGAAATCCTTACCCAGACGTTTCCCATTCTAGCGGATACTATAAATGACATGAATAATCACA
s cb4.chrX              8387595 134 + 21540570 aaaaatgaagttttctGTTCCCTCAAATATAATAtttctcttgttttgttttttactGCTAGATATTCTTGATGAAATTCTACTAGTCTTATATTCAACAATTGCCGAAGTTGTAAATGACATGAATAATCACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453719 134 -  4500979 aaaaatgcaattttccgTTCCTCATaacttactttttcttcttttttgttttttattactGGATATTCTTGATGAAATTCTATTGAACACATTCTCCACACTCGCCGAAGTTGTGGGTAAAATGAATAACAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   567856 134 - 33334924 gaatatgaaattttccGTTCCTCAAAATGTTCTATTTCtacttctttgttttttgttactGGATTTTCTAGatgaaattcttctttccacATTCTCAACAATATCAGAAGTCATAAGCATAATGAATAATCATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1708255 134 +  4147112 AACCATGAAGTTCTCTGTCCCTCCGAATATTCTCTACATGTTATTATGCTTTTTGTTGATGGACTTGATTAATCAGATTCCGCTTATGACATTTTCTACATTAGCTGATATCATTAATGAGATGAATAATCATA
i caePb3.Scfld02_0      C 0 I 24102
s caeJap4.Scaffold18194  506837 134 -   823664 AAGTATGAAGTTTTCAATTCCACCTAATCTCGTCTATATGCTATTCTGTTTTTTACTAATGGATATTATTAATCAAATTCAAATTACAACATTTGCAACGCTAGCAGATACTATCAATGTTATGAATAATCACA
i caeJap4.Scaffold18194 T 3368 C 0

a score=11809.000000
s ce10.chrX             3289602 44 + 17718866 CTTTGATGACACACTATGGAATTACACCAACTGTTACAAGG--T---------AA
s cb4.chrX              8387729 47 + 21540570 CATTGTCAACTCACTATGGGATCACACCGAATGAagcaaag--t------ttgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453853 48 -  4500979 CTCTTGTAAATCATTTTGGTATTGAACCAACGGATTCTAGG--T-----AATATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   567990 55 - 33334924 CGTTAATATCTCATTACGGATTAGAGCCAAACAGAGCAAAGTTTGTAAAAGTGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732491 53 +  4147112 CCTTGGTGGCGCACTATGGGATTACGCCAACTGAAACAAGG--TGAAgaaatgga
i caePb3.Scfld02_0      I 24102 C 0
s caeJap4.Scaffold18194  506971 44 -   823664 CACTGATTACTCATTTCGGAGTTGAACCAACTACTGCGAGg--t---------ga
i caeJap4.Scaffold18194 C 0 C 0

a score=-1290.000000
s ce10.chrX             3289646  3 + 17718866 CTT--------
s cb4.chrX              8387776  3 + 21540570 ttt--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453901  3 -  4500979 TTT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1732544 11 +  4147112 ttagaaagagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507015  0 -   823664 C
e caeSp111.Scaffold629   568045  0 - 33334924 C

a score=-7807.000000
s ce10.chrX             3289649 190 + 17718866 --------ATAATATTTTATCAGCGA---------------TTAATTTA-----------------------------------------------------CTTGTAGCATTTCAATTATGAATTCAATGATAACATCATCCGAAACGGTAGGAACATTATTATCACTAATTTTTCTGATCCCCATGGCTGACACAAAAGGAAGAAAGTTTCTCGTCATCTACATGCGGT---ACCGAAAA---TCACATCGGA--GCTTGACT--------TAATCCTGA
s cb4.chrX              8387779 189 + 21540570 --------cttgaacaTATAGTAGGG----------------CAACTTCTG---------------------------------------------------ATTTTAGCATGTCTTTTCTAACTTCAATGGTATCTGTTCTAATGACTTTTGGAACAGTActctcattattttttgttattccgTTAGCAGAATCTAAGGGAAGAAAATTTGCAACAGTGCATTGCAGGT---GGGGAAGA---TTATCCCAGT--TTTTGTAA--------tagaa-ta-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   453904 197 -  4500979 --------TCACAATGTTTTTCACCG------------GCCTTAACTATGA---------------------------------------------------CTTGcagtgtttcttttttaactTCTATGGTTACCGTATCACTCACAATCGGAACTGCGGTATCACTTTTCTGCCTGTTTCCAATTGCTGAAACTAAAGGGAGAAAATTTGCTACTGTATATTGCAGGT---ATGATAAATGTTTGTAAAGAT--CATGGTGA--------Tatacttg-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568045 182 - 33334924 --------TCCGgatttaattgaaaa----------------caat--------------------------------------------------------gtttCAGCACTTCATTTCTAACATCTCTCGTGTCGGTTGCAACAACCGTTGGTACAGGTATTTCTTTATTCTTGGTGCTTCCTGTAGCAGAAACAAAAGGTCGAAAATTTGTCACTGTGTATATTAGGT--------ATG---CTTTTCCCGTTTCTTAATAC--------tccttctg-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732555 208 +  4147112 --------ttcaaatttcgtGACAAA----------------TAATTTGAATGAT-TTGCG---------------------------------------TATTTGCAGTATATCATTTCTTAATTCATTCATCACATCTGCTGAGACTTTTGGAACGTTACTGTCCTTAATATTTATTTTACCGATTGCCGACACAAGAGGAAAGAAGTTGTTGATTGTCTACATGCGGT---GAGAAAGG---TGATTACTGG---ATAACACCGAGGCAGTATGCCTA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507015 266 -   823664 ataaaattttaaaaggttAACTGATAGAGAGttaaattgttttaatttttgtgaGAGTGCGTTTAAAAGATAATAAATATGTAATAGATTCCATATTTACTGTTTTCAGTATATCTATCTTGAACTCGTGCATTACCTCATCAAGTACGGTTGGAGTTTTTATTTCATTATTCTTTGTAATGCCATATGCTGAAACCAAAGGTCGGAAGTTTGCAGTTATTTACTTAAGGTTTTGTGAAAAG---TGTGAAAATA--TTTCATAA--------TATAAA---
i caeJap4.Scaffold18194 C 0 I 1

a score=63341.000000
s ce10.chrX             3289839 175 + 17718866 AATTTCAGATCTGCCCTGTTGATTTTATCAGCGCTTTGTCAGGTGTTATCCGCGTACTCTCAATCTGCTGAATTTTTCATAATGAGTAAACTATTCGAAGGCCTGCAACATCCTCTGGGCACATTTCTTACGGCATTGTTCATAGCCGAATGTGCACCAGATAAGAATCGAGGTA
s cb4.chrX              8387968 174 + 21540570 -atttcagaattttcttattAATAATAGCAGCgttatttctgattttttcatcatttttcacttcttctgaGTTATTTCTTCTTGCTGAAATATTCATCGGTATAGAGCATCCGTTGAGAACGTATACCACAATTATGTTTGTAACCGAGTGTGCGCCAGACAAAAATCGAGGtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   454101 174 -  4500979 -ttttcagaatttccttATTGTTCATTGCTGCTGtttgtcaaattttgtcgttcttttttcgagcatctgaattttttctactCGCTCAGTTTATTATCGGCATGGGACACCCACTGCGAACGTTTATCACTATTTTCTACGTTACCGAATGCTCTCGAGATAAAAATCGaggtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568227 174 - 33334924 -ttttcagactAGCCTTAATTTTCTTCGCAGCGCTatctcatttattttcttatttcttccaAGCGTCGgagtttttcctttttgggCAATTAATCATTGGAATAGAACATCCACTACGAACTTTTATCACTATTTTGTTTGTAACAGAATGCGCACCCGACGAAAATCGAGGTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732763 174 +  4147112 -ATTTTAGTTTCGGATTAACTATGGTATCAGCTATATGCCAATTGTCGTCAGCTTTTCTTCAAGCCACAGAATTCTATATTTTGAGTCGCTTTTTTGATGGTCTTCACCATCCCTTGAGGTCTTTTCTAACATTTATGTATGTAACAGAGTGCGCTCCTGACAAAAATAGAGGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507282 175 -   823664 AAGTTCAGATTTGTTCTGACTTTGACCACATCAATTTGCCACTTAACTGCTGCTGTTTTCCAAGCCTCTGAACTTTTTATCATTGGTCAGATATTCTCAGGATTACAACTCCCACTTCGACTTTTTGTTACTCTGCTTTTTATCACAGAATGCGCTCCTGATAGGTACCGAGGTA
i caeJap4.Scaffold18194 I 1 I 365

a score=-19960.000000
s ce10.chrX             3290014 72 + 17718866 AATCTTGAACAAGTATGAAACTTCCGAAATTCTATTTCTTTCAGGATTCGCTTGTACATCGCTGGTAGTTTT---------------
s cb4.chrX              8388142 40 + 21540570 tgt---------------------aaaaata--------------ttttaga------------ttttttctgaggattgaaatttt
i cb4.chrX              C 0 I 3050
s caeRem4.Crem_Contig0   454275 10 -  4500979 tg--------------------------------------------------------------tttctttt---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568401 18 - 33334924 AAC------------------------------------------TTTTGCA------------ATTATgtt---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732937 67 +  4147112 GGcaatg---aaatatttattatcAGAAATATCAGT--TTTCAGGATTTGCATGCACAGCTTTGATTATATT---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507457 365 -   823664 I

a score=-27740.000000
s ce10.chrX             3290086 426 + 17718866 ---AGTTGGAATTGTGAGAATGATCATGTGAGTGCAAATATTTTCAAACCGTAAGTCAGAAAAATGTCAATCTTAAGAGTTTGTATGTGACCGAACA--TTGATTTTGTATTCTCATCAGTGAGATTACTAAGAAGTCACAGTTCATATATTTTACGCACGTGATTGCCATCTCATAGG--------------TTTTTAAACCAAAAATTCTGCACTATTCGCGCGTGCTGATAAAATAGTTTAACAACCGCAAAAACCACAAGTGTGCAATTATCAACATTTTACTGCAGGTTGCCCATAGCGTCACCAGCTGTGTTAGGAAAAGCGGACACTTGGTTTGTGTTCCCACTGGCCGCACTGATAAGGTAT--GACTTTTGGCACAAAATACAAAATTGGCAATGAAACAACT-----------TTTTCAGCAGTTTTTTGGTTTTAATATGGGTATGC
s caeRem4.Crem_Contig0   454285 293 -  4500979 tcatagaaGAAGTAAACAGATAGAATT----------------------------------------------TGAGGGTTTG--------CAAGTA--ccgttctcattttttctactGTAA-------------------TTGGCA--------------GGATGCT--ATTGTGAG--------------TTTATTTTACTAT----TAGTGAC-----TGATAGTCAATGTA--AGTAGCACAGATATACT-------------------------TTTTA---TAGGTATTCCTTGGGATCTCCTGGTTTTTTCGGGAGTGAAAACTCATGGTTTGTCTTTCCCGT---------------GTTT--G----TTGCAATCAGgtatacaaaaaaattagcaTAAACAGGCCAAATTGGTATTTAGCTCTATCGTGATGCTTCTGGTGACAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568419 226 - 33334924 ---catttaatttttaccGTTGTTACC------------------------------------------------AGGTTTTG--------CAAGTA--CTGCTCTCATATTTGCAACAGTTA-------------------TTGGTA--------------GATCTCT--TTTGTAAGTTCAAGCaata---tttctctttcgaaCATTCTGT------------------------------------------------------------------TTTCA---TAGATATTCTCTGGGATCACCTAGTTTCTTTGGAAAGgttgaaacttggtttgtatttccatt---------------gttt--g----ttattcttggatc----------------------------------------tgtttttgtg---ttgttgttgACTCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733004 337 +  4147112 ---GAATGGGATGGTACGCATGGTAATGTAAG--------------------------------------TCGAGATATATTG--------CGAAAAATCTGCG-TCATTTCTGGAAT--TCC-------------------TTTATATTCTTT-------TGATCTCta-gctgaaaatcagaataaaaaattatatgtttcaaa-atacGGTACC-----CAATTGCTGATAAA--GGTTCAACCTCCATAAATGTCAA------------ATCAAACTTTTA---CAGGCTTCCCATAGCGTCACCAtcatttcttggaaaatcGGACACTTGGTTTGTGTTCCCGCTTGCCGCACTGATAAGGTTTTGA----TTAGTACAAAATCGACAGTAAACT----ACTAaca-----------ttttcagtggttttctGAACTTGTTTTTGACTTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507457 365 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=23773.000000
s ce10.chrX             3290512 115 + 17718866 CGGTTACCTGAGTCACCGAAATGGCTGGTCTGCCAAAACAGAATAGAGGAGGCTAAACGGTCCATTGAATATTACCATGGG------------AACGATTCCTC------GG-------AGAAT--TTCAGTAAGCAATGCA
s caeRem4.Crem_Contig0   454578 132 -  4500979 AAGTTACCAGATTCTCCGAAATGGCTGGTTTATCAAAATAGAATCGATGAGGCTAGGACGTCTATTCAATATTATCACGGATCTGGATGTTCCATCGGTTTTTTCTTTGTGA-------AGAATGGTTCAATAAGca---ca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568645 110 - 33334924 CGTTTACCTGATTCTCCCAAATGGTTGATCTGTCAAGACAGAACAGAAGAAGCAAAACAGTCAATTCAGTTTTATCATGGA-----------------------------AAACAGCAGAGAATAGgttgaatgaaa---ca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733341  96 +  4147112 CGTTTACCAGAATCACCGAAGTGGTTGGTGTGTCAGAATAGGatggaagaagcaaaaaagtcgGTTGAATACTATCATGGA-----------------------------GA-------AGATTGTTTTG----------CA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507822 115 -   823664 CGATTGCCAGAGTCTCCAAAATGGCTTGTGAGGCAGAACAGAATGGAAGAAGCTGCAAGAGCAACGGAGTTTTATCACGGGCATGACTGTTCTATAGGTA----------TA-------AGAacacatcgaa----------
i caeJap4.Scaffold18194 I 365 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1476.000000
s ce10.chrX             3290627 5 + 17718866 GGCCT
s caeRem4.Crem_Contig0   454710 4 -  4500979 aata-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568755 4 - 33334924 aata-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733437 5 +  4147112 AGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507937 0 -   823664 C
e cb4.chrX              8388182 3050 + 21540570 I

a score=20969.000000
s ce10.chrX             3290632 121 + 17718866 GATAATAGTTAATTGAGT------------------GTTTCAGATAACGTTTTGCTATCTATTGTGAAAGAAAAGAACCTAACAATTGAGTCGCATATATCTTTAAGAGAAGTCTTACAAAATGACACATTACGAGAGG
s caeRem4.Crem_Contig0   454714 103 -  4500979 ------------------------------------atttcagataaagttATTCGATCCTtcacaaaagagaaaaacttaACAATCGAagcaaaaatctcatttcgaCAAGCGATGGGAGATGAAACTCTCCGAGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568759 122 - 33334924 GACTCTGATTACTATCTT-----------------TATTTCAGATAATGTGGTTGCGTCGTTcgtgaaagagaaaaatttaacaGTCGAATCGCAGCTATCATATAGCCAAATTTTCGGAGATATTACATTAAGAGAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733442 134 +  4147112 GACACTAATT--TAATTTAATCGGG-ACAGGAA--TATTTCAGATGGTGTTTTACTCAACTTCATCAGAGAAAAGAACCTGACAGAAGAATCTCACATTTCATTGAGGGAAATCTGGGAAAATGATACATTGCGCGAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507937 121 -   823664 ------------------aatgaagtaCAGTAAACAGTTTCAGAGGAAAAACTATCATCTTttatcaaagaaaaaaacttgaCTATTGAAGATAGAATATCTCTGCGACAAGTATTGGAAAATGACACATTAAGAGAGG
i caeJap4.Scaffold18194 C 0 I 36
e cb4.chrX              8388182 3050 + 21540570 I

a score=-4124.000000
s ce10.chrX             3290753 32 + 17718866 T------AGCATTACTTCAGTTGATATTTGATCTGAAT
s caeRem4.Crem_Contig0   454817 38 -  4500979 TGAGTTGaatgttttcgtttttctcaacCTGTACATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568881 31 - 33334924 T-----GAACACTCT--CATTTTCTAACATTTCAgtat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733576 30 +  4147112 t--------tgctttgaaaatttataatgAATCATGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508058 36 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=27332.000000
s ce10.chrX             3290785 134 + 17718866 ATTAGT-------TTTCCAGGGGTTCAAAGTGCTGTTTTCatttttattttttatattaatCGATTCTGATAATGCATTGTCAGTTTACACTGTCCTACTTCACAAAAGTGCAGGATTTACCACACAAGAGGTGAAACATT
s caeRem4.Crem_Contig0   454855 125 -  4500979 -------------TTTTCAGGCCATAggcattcttctttttctcactctcttcttccttttggATTCTACTAGTACTCAGGCCGTTTATACAGTCTCACTTCATAAAGATGCTGGTTTTACTGTGCAAGAAGtgagtt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   568912 135 - 33334924 ttttatg------tttttaggCTCTCGGAGTTCTATTTgcaaacacatttttctttttgctcgACTCGACGAGTATCCAAGCAATCTACACAGTCCCACTTCATAAAGATGCCGGATTCACAGTTCAAGAAGtgagatttc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733606 141 +  4147112 TGcaaggaaaaatatttcagggGCTGAAAGTATTGTTCTCATATTTGTTCTTTATGTTATTTGACTCAGCTAATGTTCAAGCTGTATATTCCGTACTACTTCATCAATCAGCCGGCTATACGGTTCAGGAAGTTAGAAATA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  508094 125 -   823664 ----------ATTAATTCAGGCTCTAAAAGTACTTTTCTCAGTTTCACTTTTTCTCATATTTGACTCTGCATCAGTCCAGGGCACTTATACCGTACTACTTCACCAGCGCGCTGGTTTCACCGTCCAGGAAGTaa------
i caeJap4.Scaffold18194 I 36 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=796.000000
s ce10.chrX             3290919 3 + 17718866 TAA
s caeRem4.Crem_Contig0   454980 3 -  4500979 tga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1733749 2 +  4147112 -GA
i caePb3.Scfld02_0      I 2 I 23
s caeJap4.Scaffold18194  508219 3 -   823664 taa
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569047 0 - 33334924 C

a score=-283.000000
s ce10.chrX             3290922 3 + 17718866 -ATT
s caeRem4.Crem_Contig0   454983 3 -  4500979 -att
i caeRem4.Crem_Contig0  C 0 I 23
s caeJap4.Scaffold18194  508222 3 -   823664 aat-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1733751 23 +  4147112 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569047 0 - 33334924 C

a score=522.000000
s ce10.chrX             3290925 17 + 17718866 GATAAttaaaagtggag
s caeJap4.Scaffold18194  508225 17 -   823664 gattttaaaaatttgag
i caeJap4.Scaffold18194 C 0 I 1210
e caePb3.Scfld02_0      1733751 23 +  4147112 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569047  0 - 33334924 C
e caeRem4.Crem_Contig0   454986 23 -  4500979 I

a score=0.000000
s ce10.chrX             3290942 499 + 17718866 caccaatggggaaattttcaaaaaccactcttatcctattaaaacgacgaagtatcatagtaaaatgtatcaaaaaaaatttgaaaaatttttattgacaatcaaaaagcaattaccgagttGAGGCTTCACggtatcaggctgtctcatttcggtttgatctacgtagatctacaagaattttggtaattcggacgcagatttctcaactgattccgcatggttaagaacgtgttgacggctcttgttttgaggaaaaaatttccgcgtttgttgtagatcaaaccgtaatgggacagtctgacactacgCAAAATTCGAAGTATTTTTTTTTTGATCGACGACttcaaaaaaaacttaaaactgaagaaaactgagtttttttcaattttcaaaaattcatatcaaattttgaataatttccaattttttcctatggtatttggccattgtggtgccataatcagtttccttactggcgctattccatcATCAAAAA
e caePb3.Scfld02_0      1733751  23 +  4147112 I
e caeJap4.Scaffold18194  508242 1210 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569047   0 - 33334924 C
e caeRem4.Crem_Contig0   454986  23 -  4500979 I

a score=799.000000
s ce10.chrX             3291441 21 + 17718866 AAAATCTATTAACGTGAGAAA
s caeSp111.Scaffold629   569047 21 - 33334924 aaattcaataaacacaaaaaa
i caeSp111.Scaffold629  C 0 I 5
e caePb3.Scfld02_0      1733751 23 +  4147112 I
e caeJap4.Scaffold18194  508242 1210 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   454986 23 -  4500979 I

a score=25242.000000
s ce10.chrX             3291462 121 + 17718866 TTTCACAGGCAATCAATATCAACTTGATAATCTCCATAGTATTTTTCCCAACTCAATTCATTGGAACATTGTTAATTGATTATCTTGGTAGGCGTCCGGCCTTTTGTATTGGCGGATTCAT
s caeRem4.Crem_Contig0   455009 121 -  4500979 TTTCGCAGACAATGAACATAAGTTTGATTCTGACCATTGTATTTTTCCCTACCAAATTCATTGGCACATATATTATAGATGCTTTGGGAAGAAGGCCAGTCATGATTCTTGCCGGTGTCAT
i caeRem4.Crem_Contig0  I 23 I 73
s caeSp111.Scaffold629   569073 121 - 33334924 ttgtTTAGGCTATGAACATAAATTTAATTCTTTCAATTGTATTTTTCCCGACAAAATTTATCGGGACATTTATAATGGATGCATTGGGAAGAAGGCCTGTCATGCTAATTGCTGGAGTTTT
i caeSp111.Scaffold629  I 5 C 0
s caePb3.Scfld02_0      1733774 121 +  4147112 TTATACAGGCTCTAAACATAAACTTGATAATGACGATGGTATTTTTTCCAACACAATTCTTCAGCACTTTTCTGCTCGACTACCTCGGACGACGACCGGTCATGTTGATTGCAGGAATACT
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold18194  508242 1210 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=-5365.000000
s ce10.chrX             3291583 75 + 17718866 GATGTGA------------GAAACAAAAATTTAAACATTGAGTCAGGTGATTACTTGTATACAGATTCATTAAAAGTTGCCTCCTAT
s caeSp111.Scaffold629   569194 69 - 33334924 ATGGTATGTTTCCTGATGGttgacaaaaatt-------tgaaaaaaaccttaGCCTTTCAAAATCTGTATTGA-----------TGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733895 69 +  4147112 GACGTAC-TCACTCAATCAACCCCAGATCTT------ACGAATTAAATTGTAGGTATTCTATGTCCTGGCTAA-----------TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508242 1210 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   455130 73 -  4500979 I

a score=1313.000000
s ce10.chrX             3291658 102 + 17718866 TACTCGTTCAATTTGCTATATATTTTTTTGGAGCAAACCTGATTACAAAAATAATTGGTATGAATTTTTTTTTAGTAAGTTATTCAATATACTTAACAC---------GAC
s caeRem4.Crem_Contig0   455203  95 -  4500979 TGATAACACAGGTCGTGATTTATTTTGTGGGGCAGAGCTTACTCACCAAGATAAT--GTGTGAGTTCTCAATATTCAATCAACTTGTAACA---AGCGC-----------A
i caeRem4.Crem_Contig0  I 73 C 0
s caeSp111.Scaffold629   569263  97 - 33334924 TTTTCACTCAAACAGTTATCTATTTTATCGGACAGAATAGAATTACTAAGGTCAT--GtgtgagttttcagaatcatgACTATTTGCTATA---AGAAC---------TTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733964  95 +  4147112 TGATCACACAATGGATAATTTATCTTTTCGGCTCAAGTTTGTTAACCAAAATTTT--ATGTTAGT-----------TGCCGTTTGGCTATC---AGTATTCCACTTTGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508242 1210 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=7196.000000
s ce10.chrX             3291760 25 + 17718866 TTTCAGATATTATCATTGCATGTCT
s caeRem4.Crem_Contig0   455298 25 -  4500979 CTTTAGATGTGGCCGTTGAATGTCT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   569360 25 - 33334924 TTTTAGACGTGAGCGTAGAATGTCT
i caeSp111.Scaffold629  C 0 I 16
s caePb3.Scfld02_0      1734059 25 +  4147112 ATTCAGATCTCGTGATGGAGGTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509452 25 -   823664 TTACAGTTATTAGCGTTCAATGTCT
i caeJap4.Scaffold18194 I 1210 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=-2739.000000
s ce10.chrX             3291785 16 + 17718866 AGGCTCTGGGCCG---AAT
s caeRem4.Crem_Contig0   455326 13 -  4500979 AGGCTCCATACCG------
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      1734084 16 +  4147112 TAGCAATGCGTCGTTG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509477  8 -   823664 --------TGCCGAAG---
i caeJap4.Scaffold18194 C 0 I 8
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569385 16 - 33334924 I

a score=37120.000000
s ce10.chrX             3291801 80 + 17718866 GCAACTGGAATGTCTTCGCTTAGAATATTATTCATAACCGAACTATTTCCGCCGTCGGCAAGAACCTCCATATCCCAGGT
s caeRem4.Crem_Contig0   455339 80 -  4500979 GCTACCGGAGTTACATCATTACATGTACTTTTCATTTCGGAACTGTTTCCGCCATCTGCAAGAACTTCCGTTGCTCAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   569401 80 - 33334924 GCTACTGGAGTCACTTCTTTGcatattctttttattgCCGAACTGTTTCCCCCATCAGCAAGAACACCGGTTGCACAAGT
i caeSp111.Scaffold629  I 16 C 0
s caePb3.Scfld02_0      1734100 80 +  4147112 AACACTGGAGCTACGGCGTTAAGAATACTTTTTATTACGGAACTGTTTCCTCCGTCTGCTAAAACCGCGGTTTCACAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509493 80 -   823664 GCAACTGGAGTCACTTCGCTGGGAATTCTCTTCATCACCGAACTATTTCCACCATCGGCAAGAACATCAGTTGCTCAAGT
i caeJap4.Scaffold18194 I 8 I 32
e cb4.chrX              8388182 3050 + 21540570 I

a score=-3259.000000
s ce10.chrX             3291881 14 + 17718866 AGGTCGAAAAGC-----TT
s caeRem4.Crem_Contig0   455419 14 -  4500979 GAGTTCACAAAT-----GA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   569481  2 - 33334924 -----------------TG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734180 19 +  4147112 ATACTTTAAAATTCTTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509573 32 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=-477.000000
s ce10.chrX             3291895 41 + 17718866 ACAGTTCGTTATGTTACATT------------TTCAGATAATGCTCTTCACAA
s caeRem4.Crem_Contig0   455433 43 -  4500979 ACAACGCACAGGTTTTCAATTC----------TACAGGTCATGATTATCATAG
i caeRem4.Crem_Contig0  C 0 I 4374
s caeSp111.Scaffold629   569483 53 - 33334924 GTTGAGTAGATTATTCCATtttaaaatcgaatttcagatAATGATAATCACAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734199 44 +  4147112 GCTGAGCA-ATAATTTCATCTGAA--------TTCAGGCGATGTTGTTCACCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509605 38 -   823664 acattttaaattgttttttt------------ttcaggcaaTGATGTTAG---
i caeJap4.Scaffold18194 I 32 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=23035.000000
s ce10.chrX             3291936 94 + 17718866 ---GTCTAGCAATCAATTCGTCTCTTTTGTCGTCTTTTCCACTACTCTACTCTTGGTTCCCACCAGCATTTTTCACACCACTTGTATTCACGCAAAT
s caeRem4.Crem_Contig0   459850 94 -  4500979 ---CTTTGGCGATGAACTCATCTCTAATGTCGTCTTTCccagttttgttttctttttttccaccGGGATTTTTCATGCCATTTGTGGTCACTCAGCT
i caeRem4.Crem_Contig0  I 4374 C 0
s caeSp111.Scaffold629   569536 94 - 33334924 ---CTATAATAATTGATTCTCCAATGATTACTCTGTTTCCTTACAtatattcttattttccacCAGGattctttcttccatttgtGATTAGTCAAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734243 94 +  4147112 ---ACTTGGCTATAAATTCTTCACTGATGTCAAGTTTCCCTattttgtattcatttttcccgCCTGCGTTTTTTACTCCTTTCGTGTTCACACAATT
i caePb3.Scfld02_0      C 0 T 15404
s caeJap4.Scaffold18194  509643 97 -   823664 GTTCAATTGGTCTCGCTTTTCCAATCAGTTCATCATTTCCAATAGTTTACTCGTTCTTCACACCGGGATTTTTTATGCCCCCTATAATCACCCAATT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1529.000000
s ce10.chrX             3292030 22 + 17718866 GTTTTTCGGTATCTACTTGTAC-----------------------------------------------------------
s caeRem4.Crem_Contig0   459944 22 -  4500979 GATATTTGGTGTGTACATGTAC-----------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold629   569630 22 - 33334924 TGTGTTTGGTATTTACTTATAC-----------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1718933 22 +  4147112 CGTGTTTGGAACTTATCTTTAC-----------------------------------------------------------
i caePb3.Scfld02_0      T 15404 C 0
s caeJap4.Scaffold18194  509740 81 -   823664 TCTGTTAGGAACGTACTTGTTCAGGTATTGGTTGCACACTTTTCGATTAGATACACAAATTGATGATGTGGAACGTTTTAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=2292.000000
s ce10.chrX             3292052 4 + 17718866 AGGT
s caeSp111.Scaffold629   569652 4 - 33334924 AGGT
i caeSp111.Scaffold629  C 0 I 53
s caePb3.Scfld02_0      1718955 4 +  4147112 AGGT
i caePb3.Scfld02_0      C 0 I 50
s caeJap4.Scaffold18194  509821 4 -   823664 AGGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   459966 52 -  4500979 I

a score=36258.000000
s ce10.chrX             3292056 164 + 17718866 ACATGCCCGAAACTAAAGGTCGGGCGGTTTGTGATATTATAGAGTCATTCGACGAAGAAGTCGCGTCAAGAGTAAGAAACCGAATTTTCT--AATCAGA-----TCGAAATATT----AATTT-CAGTCCGTTTCATTCCTGCAGGAAAAAACTCCATTAATTCGAAAAAGAGTAA
s caeRem4.Crem_Contig0   460018 164 -  4500979 ATATGCCAGAAACTAAAGGACGTACAGTATGCGACATCATTGAGTCAATGGATGAGAATGTTATGTCTAGGGTGA------AAATTTCTGCTCAGTAAA-----gatagaaactcaaaaattt-cagaccgCTACACTTGTTGAAGAAAAGATTCCTCTAATTAAGTCTAGAGTGg
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold629   569709 163 - 33334924 ACATGCCAGAAACCAAAGGAAGAGCCGTATGCGATATTATTGAATCAATGGAGCAGGATGTCTTCACTAGAGT--------AAGTTCTCACTAATTTTA-----TCTAAacaattctttatttttagacTCACTCTTTACTCGAAGAGAAAACTCCATTGATCAGAGATCGGGTAT
i caeSp111.Scaffold629  I 53 C 0
s caePb3.Scfld02_0      1719009 173 +  4147112 ATATGCCTGAAACAAAAGGACGTCCTGTATGTGATATCATTGAATCATTAGAACAAACTGTTACATCAAGAGTGAG-Tgtcaagttttcg--aatttcaaagtttctataaattctgatttttgtaggCTCAATCGCTATTGGAAGAGAAAACGCCTCTAATCAGAGAACGGGTTT
i caePb3.Scfld02_0      I 50 C 0
s caeJap4.Scaffold18194  509825 164 -   823664 ATATGCCGGAGACTCGGGCTCGAGCGGTTTGTGATATTATTGAGGCTATGGATCAGGAAGTTGCATCCAGGGTAAACGga-gatttttta--aatcttt-----cttgtata---gaaaattt-cagactgcaTCAGTTCTCGAAGAGAAAATACCATTGATTAGAGATAGGGTAA
i caeJap4.Scaffold18194 C 0 I 12
e cb4.chrX              8388182 3050 + 21540570 I

a score=-382.000000
s ce10.chrX             3292220 9 + 17718866 GTTGTTATA
s caeRem4.Crem_Contig0   460182 9 -  4500979 gttgaacac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   569872 9 - 33334924 GTCAGTTCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1719182 9 +  4147112 GTTTATCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509989 12 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=-4420.000000
s ce10.chrX             3292229 14 + 17718866 AATTA--CCAATAAAC--
s caeRem4.Crem_Contig0   460191 12 -  4500979 ttttt--tcagc--aC--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   569881 10 - 33334924 ATCTA--Tta----ac--
i caeSp111.Scaffold629  C 0 I 5773
s caePb3.Scfld02_0      1719191 12 +  4147112 TTTTATTTTA----AT--
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18194  510001 14 -   823664 ATTTT--TCAGA--Atgc
i caeJap4.Scaffold18194 I 12 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=273.000000
s ce10.chrX             3292243 1 + 17718866 T
s caePb3.Scfld02_0      1719227 1 +  4147112 T
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold18194  510015 1 -   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   569891 5773 - 33334924 I
e caeRem4.Crem_Contig0   460203 3 -  4500979 I

a score=19465.000000
s ce10.chrX             3292244 74 + 17718866 --------------------GTGTAGAT-------TTCAGTCCAACACGCATGCCTTCAAAAGAAACAGCATTCTCAACACTTCTCGAACAAGAGTATGC----A
s caeRem4.Crem_Contig0   460206 76 -  4500979 ------------------------ATCTAATTTTATTCAGGCTTGGACATTGGCGGCAAAACGAAATAGTATACTTACTATTTCCAGATCCAGGGTAAT-----T
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   575664 75 - 33334924 -----------------------gatcT-------TTCAGGCCAGAACTGTCGCTGTAAAAAGAAATAGCATACTCAACACTCCTCGAACAAGGGTGAGAGCACA
i caeSp111.Scaffold629  I 5773 C 0
s caePb3.Scfld02_0      1719228 71 +  4147112 -----------------------GATCT-------TTCAGGCCAGAACTCTCGCGGTAAAGAGAAACAGCATACTCAACACTTCTCGTACACGGGTATGA----A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  510016 94 -   823664 ctttaaaaatttttctaaaattaaaCCT-------TCCAGGCTAGCACATTTGCCACAAAGCGAAACAGCATTCTCAACACTTCACGCACACGAGTATGA----A
i caeJap4.Scaffold18194 C 0 T 486
e cb4.chrX              8388182 3050 + 21540570 I

a score=-202.000000
s ce10.chrX             3292318 77 + 17718866 TGAGAGAGTTTATA---GTATCATAGTACTTTGAAAATTTCAGGCTTTAACTTTCGATCATATGTTAATTCCAAGGAGAA
s caeRem4.Crem_Contig0   460282 69 -  4500979 AAACTTGTGTTTCACATGacttaaagt-ttt------tttcagacattgaCGTACGATcagaagtacattcccaaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575739 72 - 33334924 AAAGATAAGCGACGTGCAAAATACAACCAAT------TTTCAGGCCTTGACCTTCGATCACAAGTTCATTCCGGAGAA--
i caeSp111.Scaffold629  C 0 T 808
s caePb3.Scfld02_0      1719299 69 +  4147112 AAACGGAATCAAAATATTCGGGAAAGTATCT------TTACAGGCTGCCACCTATGACCAAACGTTGATTCCCCA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=762.000000
s ce10.chrX             3292395 7 + 17718866 AATGAAA
s caeRem4.Crem_Contig0   460351 7 -  4500979 aatcaaa
i caeRem4.Crem_Contig0  C 0 I 1674
s caePb3.Scfld02_0      1719368 4 +  4147112 ---GAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575811 808 - 33334924 T

a score=1100.000000
s ce10.chrX             3292402 100 + 17718866 ATTAATACCTTCTT--CAATGataattatatgtattt-------tttcaataaaaattataatattttaCAACACACGAATGCT----------TCAATGAAAAATTTTCGATTATTCT
s caePb3.Scfld02_0      1719372 118 +  4147112 ATTCATATCTACTGAACGAGGTCTATTATATACAGTTGgacatatttcaaaagaactGAGGATA-ATTACTAAacagaaactttcaaaatgaactcatGGAGCAGTTTTTGATTACTTT
i caePb3.Scfld02_0      C 0 I 17214
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575811 808 - 33334924 T
e caeRem4.Crem_Contig0   460358 1674 -  4500979 I

a score=0.000000
s ce10.chrX             3292502 3916 + 17718866  
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110  486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575811  808 - 33334924 T
e caeRem4.Crem_Contig0   460358 1674 -  4500979 I

a score=369.000000
s ce10.chrX             3296418 27 + 17718866 AAAAAGTAAAAAATGAGCATAACCTA-------A
s caeRem4.Crem_Contig0   462032 34 -  4500979 aataaataagaaaaagacacaaattattgaaaaa
i caeRem4.Crem_Contig0  I 1674 C 0
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575811 808 - 33334924 T

a score=17525.000000
s ce10.chrX             3296445 243 + 17718866 -CATTACAGGTATATCAAATCTTTGCTAATTCTTGCCGTTGAAACGATCATTTATATATTTGGTTCAAGTTTAATGACAGAAATTACG-GTAAAT-----GCATTTTAATTTTTGAAACTAGAAAAG------TTCAGATATCATTGTGGAATTTTTGTCAACGGTTGTGCCGGCAACTGGTGCAAACGCGATTCGATTATTATTTGTGACCGAGCTTTTTCCTCCATCGGCAAGAACGGTTGTAGGGCAGGTAAG
s caeRem4.Crem_Contig0   462066 251 -  4500979 -tgattcagaTATTCAAAATCTGTTTTACTTTTGGCAACTGAAATCATCATTTATATTTCCGGTGCAAGTTTTTTGACGGAAAGTTTATGTGAGTGACCTAAAAGAGAATTGTTTGaga-atgaaagttt---ttcagatgttgTGGTAGAATTACTGTCATCATTGGCTCCTGCAACTGGTATGAATTCCATTCGAATTTTGTTCGTATCTGAGTTGTTTCCACCTTCTGCCCGAACAGCGGTTGGGCAAGTGAG
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold629   575003 251 - 33334924 cattttcagaatatcaaaaTCTGCGTTGATGCTGGCAACCGAATCAATTGTATACGTCTCAGGGCCAAGTATTCTCACAGAAATGATGTGTAAGTTGC--AAGAGTCAATATCTCATT---TAGTAGTTTCCCTTCAGACATTGTGGTTGAATCTCTTCTAGCATTAGTCCCAGCGACAGGAGCAAACTCTCTTCGGATACTCCTTGTCTCGGAACTATTTCCACCATCTGCAAGAACAGCTGTTGGACAAGTGAG
i caeSp111.Scaffold629  T 808 C 0
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=-169.000000
s ce10.chrX             3296688 20 + 17718866 AT--------GTTTTGAAGTTAAA--AAAA
s caeSp111.Scaffold629   575254 30 - 33334924 GTTGAATGAGGGTTCAAAGTTTAATCAGAA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   462317 23 -  4500979 I

a score=0.000000
s ce10.chrX             3296708 737 + 17718866  
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575284   0 - 33334924 C
e caeRem4.Crem_Contig0   462317  23 -  4500979 I

a score=584.000000
s ce10.chrX             3297445 20 + 17718866 TCAAAGTCAAAACAAATGTA
s caeRem4.Crem_Contig0   462340 20 -  4500979 TTGAACcccaaataaataaa
i caeRem4.Crem_Contig0  I 23 C 0
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e caeJap4.Scaffold18194  510110 486 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575284  0 - 33334924 C

a score=273.000000
s ce10.chrX             3297465 1 + 17718866 T
s caeRem4.Crem_Contig0   462360 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold18194  509624 1 -   823664 t
i caeJap4.Scaffold18194 T 486 C 0
e caePb3.Scfld02_0      1719490 17214 +  4147112 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   575284 0 - 33334924 C

a score=11663.000000
s ce10.chrX             3297466 21 + 17718866 TTCAGGCAATGTTATTTGGAT
s caeRem4.Crem_Contig0   462362 21 -  4500979 ttcaggcGATGATGTTCATTT
i caeRem4.Crem_Contig0  I 1 T 6907
s caeSp111.Scaffold629   575284 21 - 33334924 TTCAGGCAATGATGTTCTTCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736704 21 +  4147112 TTCAGGCGATGTTATTCACTT
i caePb3.Scfld02_0      I 17214 C 0
s caeJap4.Scaffold18194  509625 21 -   823664 ttcaggcaaTGATGTTAGGTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=23172.000000
s ce10.chrX             3297487 94 + 17718866 CAATGGCGGTTGGTATGCCAGTGGTATCACTATTTCCCATAATCAACTCAATATTTTCTCCAATATTTTTCGTACCATTTGTGATTGTGCAAAC
s caeRem4.Crem_Contig0   455476 94 -  4500979 CAATGATAATTGATACACCGTTGCTAGCCATGTTTCCTTTTGTATACTCCTATTTTCCTCCAGGGTTTTTTGTTCCATTCGCAATTTCTCAAGT
i caeRem4.Crem_Contig0  T 6907 C 0
s caeSp111.Scaffold629   575305 94 - 33334924 CTCTTGGAATCAGCTCACCTATCATTTCGCTGTTTCCTATTATCAACTCTATATTCCCACCAATCTTCTATGTTCCGTTTGTTATTagtcaatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736725 94 +  4147112 CAATGGCGATAGGCACACCAATTCTATCCATCTTTCCAATAATCAACTCAATTTTCCCTCCTGCTTTCTTCATACCATTTGCGATTTCCCAATT
i caePb3.Scfld02_0      C 0 T 2482
s caeJap4.Scaffold18194  509646 94 -   823664 CAATTGGTCTCGCTTTTCCAATCAGTTCATCATTTCCAATAGTTTACTCGTTCTTCACACCGGGATTTTTTATGCCCCCTATAATCACCCAATT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=10261.000000
s ce10.chrX             3297581 26 + 17718866 AGTATTTGGAATTTACTTATATAGGT
s caeRem4.Crem_Contig0   455570 26 -  4500979 GATATGCGGAATTTATTTGTACAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575399 26 - 33334924 gttttttgggatCTATTTATATCGgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734337 26 +  4147112 AGTGTGTGGAACTTTCTTATACAGGT
i caePb3.Scfld02_0      T 2482 C 0
s caeJap4.Scaffold18194  509740 26 -   823664 TCTGTTAGGAACGTACTTGTTCAGGT
i caeJap4.Scaffold18194 C 0 I 56
e cb4.chrX              8388182 3050 + 21540570 I

a score=-6430.000000
s ce10.chrX             3297607 49 + 17718866 TTG----T--TTCATTGAAATAACGTAAACCAAAAAGATAACATGGCTGGATTAA
s caeRem4.Crem_Contig0   455596 42 -  4500979 -TAGtc-t--gattttgatttgaacAATATCGAAAAGG---------TTGTTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575425 41 - 33334924 ataatcat--gattttcagtttaaagGAATTCTAAG------------AATTTTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734363 38 +  4147112 TTGATCATGGGGCATTCATTT-----ATACCATACG------------TTATTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509766 56 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=36716.000000
s ce10.chrX             3297656 83 + 17718866 GGTATATGCCAGAAACACGTGGGCGCGCTGTGTACGACATCATTGAATCCATGGATAAGGACGTGGCTTCCAGGGTAGGTGCA
s caeRem4.Crem_Contig0   455638 83 -  4500979 GACATATGCCTGAAACTAGTGGTCGTGCAGTTTGCGACATTATTGAATCGATGGAAAAAACAGTGACGTCGAGGGTGAaccta
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   575466 83 - 33334924 GGCACATGCCAGAAACAAGAGGTCGCGCTGTATACGATATCATTGAGTCACTAGATAGAGACGTTGGTTTCAGGGTaaggaaa
i caeSp111.Scaffold629  C 0 T 2458
s caePb3.Scfld02_0      1734401 83 +  4147112 GGCATATGCCGGAAACTCGAGGTCGTGCTGTGTGTGATATTATCGAATCAATGGATGAAGACGTTGCATCAAGAGTTTGTTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509822 83 -   823664 GGTATATGCCGGAGACTCGGGCTCGAGCGGTTTGTGATATTATTGAGGCTATGGATCAGGAAGTTGCATCCAGGGTAAACGga
i caeJap4.Scaffold18194 I 56 C 0
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1266.000000
s ce10.chrX             3297739 84 + 17718866 GAGTTTTGAA---TAAAATTTGATTTTGTGGC-----------------T---TTCCAGGCGGTTTCT---ATCGACGAAGAGAATACACCGCTGATTAAAAATCGTGTA
s caeRem4.Crem_Contig0   455723 84 -  4500979 aatatttgtt--gtaTAAT---GTTCCATTTT---------------------CTTCAGGCCCACTCACTGTTATTGGATGAGAAAACACCACTTATCAGAGATAGAGTT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   573091 90 - 33334924 GAGTTTCATC---TATAAC-TGAAAccatgaat----------tgaaaat---tttcagagtttctCA---TTCATCGAGGAAAACATTCCTCTTATCAAATCTAGAGTA
i caeSp111.Scaffold629  T 2458 C 0
s caePb3.Scfld02_0      1734484 88 +  4147112 ------CATTGGGTATAAt-taattcaacaaa------------aaaaatcaatttcagacGTTCTCA---TTCATAGGAGAGAGCACTCCTTTAATGAAATCGAGAGta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509905 83 -   823664 ---------------------gattttttaaatctttcttgtatagaaaa---tttcagactgcaTCA---GTTCTCGAAGAGAAAATACCATTGATTAGAGATAGGGTA
i caeJap4.Scaffold18194 C 0 T 3177
e cb4.chrX              8388182 3050 + 21540570 I

a score=-7829.000000
s ce10.chrX             3297823 47 + 17718866 AGT----TTTCGAAATCGTTTTTAAAGTCCAGCTGCCCT----ATTTGAACTATA--
s caeRem4.Crem_Contig0   455807 51 -  4500979 Cgttatcttttt--ctcat---taaatGTCAATCAGAATTGAACTTGAAATTGATC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573181 35 - 33334924 AGT----TTTTG--ATCa----------tcaatcagttt-----tttcatctAATT-
i caeSp111.Scaffold629  C 0 T 3295
s caePb3.Scfld02_0      1734572 39 +  4147112 tgt----tttta--tttgt-------gtttgacctcttt-----ttttacttgcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=20072.000000
s ce10.chrX             3297870 69 + 17718866 TTATAGGCTAGAACTCTTGCAACAAAACGGAATAGCATATTGAACACACCTCGTACACGGGTAACAATG
s caeRem4.Crem_Contig0   455858 69 -  4500979 TTTCAGGCACAAACGttgacaacaaaaagaaacagcATACTCAACTCTTCTCGTACACGGGTAATAGTG
i caeRem4.Crem_Contig0  C 0 I 4354
s caeSp111.Scaffold629   569921 69 - 33334924 TTTCAGGCCAGAACATTTGCAACAAAAAGGAACAGCATTCTTAACACTTCTCGTACAAGGGTAAAAATA
i caeSp111.Scaffold629  T 3295 C 0
s caePb3.Scfld02_0      1734611 69 +  4147112 tttCAGGCAGGAACATTGACTATGAAGCGAAACAGCATCTTGAACACTTCACGTTCTCGAGTAAGCATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=-955.000000
s ce10.chrX             3297939 5 + 17718866 ATAAG
s caeSp111.Scaffold629   569990 2 - 33334924 AA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734680 5 +  4147112 GAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   455927 4354 -  4500979 I

a score=1713.000000
s ce10.chrX             3297944 65 + 17718866 -------------------AAAAGTTGCACCAAAAACCTTAAT-----TTTCAGGCAATGACTTTTGATCACAAGTTCATTTCAGAGAA
s caeRem4.Crem_Contig0   460281 72 -  4500979 -----------------TAAACTTGTGTTTCACATGacttaaagtttttttcagacattgaCGTACGATcagaagtacattcccaaaaa
i caeRem4.Crem_Contig0  I 4354 I 2550
s caeSp111.Scaffold629   569992 67 - 33334924 ------CTCAGTGAAACTATAAATATATTC-----------AA-----TTCCAGGCTTTAACATGTGACCAAAGGGTGATTTTAAACAA
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1734685 72 +  4147112 CATCTTTTCAGT----TCAGAAAcacatttc--------tgaa-----tttcagactTCAACCTACGATCAAAAGTAcatattgaacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1322.000000
s ce10.chrX             3298009 9 + 17718866 CTGCACCTA-
s caeRem4.Crem_Contig0   462903 4 -  4500979 ------CTGA
i caeRem4.Crem_Contig0  I 2550 C 0
s caeSp111.Scaffold629   570064 9 - 33334924 AAGTATTTT-
i caeSp111.Scaffold629  I 5 I 9
s caePb3.Scfld02_0      1734757 9 +  4147112 aaacatctA-
i caePb3.Scfld02_0      C 0 I 222
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=-6142.000000
s ce10.chrX             3298018 105 + 17718866 ---------------------AATTCT--TGATAAAGACTTGTGTGATTACTGATAATATG----ATCAGTG---CACTTTTTGTACAGATTAACCTTTTA---CTTGTTTGATAAATGATGTTTG--------ATATCAAAAAAC--
s caeRem4.Crem_Contig0   462907  87 -  4500979 --------------CATTCTTGATACT--TGGTTGTGATAAGACTGATGTGTGCTCCGATG--------------CACTTTT--------TGTATTGTATA--------tcaatgaatttttgttc---------------aaaagaA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   570082 146 - 33334924 AATGggttgaaaaccaaaatagaTCTTCATCATTACGATTGGgcatatttttgtttgaacgtcttctcaatttgacattttttaaataaatacattttttaacatcttctcaatctcttttttttctcttcttgatgTTATAAAAC--
i caeSp111.Scaffold629  I 9 I 201
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=409.000000
s ce10.chrX             3298123 41 + 17718866 GACTATTTTATAACACACGAAGTAAAT---GTAGAA-ATGAAAAA
s caeRem4.Crem_Contig0   462994 45 -  4500979 TAAAATGTCTTAATATGAAGAGTCAATCAGatagaagatgaagaa
i caeRem4.Crem_Contig0  C 0 T 2485
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   570228 201 - 33334924 I

a score=0.000000
s ce10.chrX             3298164 173 + 17718866 TTTGCGATCAGTCTGATGGATTTTAGTATGGCTAACCCAGATTGACGCAAAAAATATGGTCTCTAATTCACAATGTGATTTATTGAAACATTATTTTAATATTATGATTTTTTCAAAGTGAAATTTACCTCAAATTTTAACATTTTGTCCTTCAAGCAGCATTTGAGAGTTAA
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   570228 201 - 33334924 I
e caeRem4.Crem_Contig0   463039 2485 -  4500979 T

a score=665.000000
s ce10.chrX             3298337 62 + 17718866 TTTTCAATAATCTTGTAAG-------------TTTTTCGTATGCGT---------------TTGTAGTATATTT--------TGGGTTTTTGAGTTTC
s caeSp111.Scaffold629   570429 98 - 33334924 CTTGCAGTGATCTTATAATGGACAAGTTATACTTTTTCTAATGAATGACACTGATTCAGTTTCATAATATATTTATCATTTATCGGTCTTTCCGTTTC
i caeSp111.Scaffold629  I 201 I 54
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   463039 2485 -  4500979 T

a score=0.000000
s ce10.chrX             3298399 40 + 17718866 TTCAAACAGTAGGTTTACAAAGATCATCAAAATGCGATGT
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   570527 54 - 33334924 I
e caeRem4.Crem_Contig0   463039 2485 -  4500979 T

a score=-2586.000000
s ce10.chrX             3298439 354 + 17718866 GAAAGTTT-------AAAAA--------AGCAGAAAAAAGGTTAATAAATAAG----------TAACAAATTATTCCCCGATTTCCCGTTTTACAAGTCAGCGGAAAAAGT------------AGGTTACTGAAAACG-------GCAAAAAATTAGCCACTTC--------------ACAATTTCAT--ACATTCTCCGTTATTCAAATACTCTTATACTATTCAAAAGCATTACAAAACTACATAGAAAAAATTCACATTTCCAAAAGTTACGCATAGCTACAAAAACTATTTAAAAATGTGAAAGTAATATAAAACTACATAATTTCTAGTCAGTTAGTATTTCGACCTTACAAAAAAT---TTGCCTGGTGTGTTTACATATTGATTGGCCACTTGAC-----TCGCTGAAGAATA-TA
s caeSp111.Scaffold629   570581 353 - 33334924 gaaatttttgatcgcAAAGACGACTTTTGGCGGGAGAATCACTGATAAACTAGAATGCACTTTCAGTACATTATT------GTTTTTGCTTAAC---TCGGTTGTGAAACTGAACTTTGATCCAAACTACGGAAAACGACTCAGAGCTAAAATTTGGAGATTTCTGAGATCTCGGAGAACGAATCGGTGGACATTTTCC------TGAATGCtcagat----tcaaaaataattattcaaCTACCTATAAAAAG----------CAATATTTGATCAACAtaataaa-------tagaaatt-----gtCATTCAATACCATATAAATTA-----------------------ACAAGAAATCGATTCTCGAATG------AACGACAGTTGGTCACTCGCTGTCCGTCACAGTTAGATACTT
i caeSp111.Scaffold629  I 54 C 0
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I
e caeRem4.Crem_Contig0   463039 2485 -  4500979 T

a score=-271.000000
s ce10.chrX             3298793 69 + 17718866 TGGAAAAAGTGGGTGG---TTCTGATAAGA-AGTCAA-----CACACAATACCAACAA-----------ATTGTCCTATTGTGCAATTC
s caeRem4.Crem_Contig0   460554 55 -  4500979 TGGAAAAAGTGT-------TCTTGATAAGAGAATCAAGAACTGTCCTGATACCAGTTC---------------------------AGTC
i caeRem4.Crem_Contig0  T 2485 C 0
s caeSp111.Scaffold629   570934 84 - 33334924 TAAGAAAAGTAGGTGGacattccgaaaaaaaaaccga-----atccTGATAACAGTTTTGCTACATTTACTTGCTTTCCTAtataaatt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e caeJap4.Scaffold18194  509988 3177 -   823664 T
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1211.000000
s ce10.chrX             3298862 35 + 17718866 TCAACTCATTCTCACTCCTAACAAAGACTTTTGCC---
s caeRem4.Crem_Contig0   460609 25 -  4500979 TCAGTTTTTCCTGGTGTC----------ACTTGCA---
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   571018 28 - 33334924 ttattcttttcttgtttc-------gaTACTCAAC---
i caeSp111.Scaffold629  C 0 I 8
s caeJap4.Scaffold18194  506811 30 -   823664 tcaatttttcctcattacca--------atttGCAAGT
i caeJap4.Scaffold18194 T 3177 C 0
e caePb3.Scfld02_0      1734766 222 +  4147112 I
e cb4.chrX              8388182 3050 + 21540570 I

a score=37950.000000
s ce10.chrX             3298897 187 + 17718866 ATGAAGTTCACCGTTCCTCGAAATATTCTTTTCATGATATTCACTTTTGT-ACTGTTGGATATTGTAATGCAGATGCAAGTACTCACATTCTCTGCTCTAGCAGAACTTGTAAATCAGATGAATAATTATACATTGAGTGCGCATTTTGGTATCACGCCTACAGAGACTAGGT-----GAGTCTTATTAGAGG---
s caeRem4.Crem_Contig0   460637 180 -  4500979 ACGATGTTTTCTATTCCTAGGAATATTATTTTCATGATATTATGTTTTCT-ACTCTTGGATACCATTAACCAAATGCAAGTTCTAATGTTTTCATCATTATCCGAAGTGATCACTGCAATGAATAATCACACTCTTGTCTCACATTTCGGTTTGGAACCTACCGGAACACGGt-----aatttgca----------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   571054 179 - 33334924 ATGAAGTTACCTGTGCCAAAGAGAATTCTTTCAATGATAGTT-TCATTGTCTCTGATGGATTTTTCTGCTGAAATCCTATCTCAAACTTTTCCAATCCTTGCTAGCACTATTCGAAACATGAATAATCACACATTGTCGACACATTACGGAATCAAGCCTACAGAAACAAGgt-----aaattgc-----------
i caeSp111.Scaffold629  I 8 C 0
s caePb3.Scfld02_0      1734988 178 +  4147112 atgaaattctccgTGCCCAGAAATATTCTCTATATGATAGTTGTTACTAT-GCTGTTGGATATTATCAATCAGATTCAAGTGCTGACGTTTTCCACGTTGGCTGAGGTAGTTGGAGAGATGAACAATCATACACTCGTTAACCATTTTGGATTGCAACCCACAAAAGCtaggt------attttt-----------
i caePb3.Scfld02_0      I 222 C 0
s caeJap4.Scaffold18194  506841 187 -   823664 ATGAAGTTTTCAATTCCACCTAATCTCGTCTATATGCTATTCTGTTTTTT-ACTAATGGATATTATTAATCAAATTCAAATTACAACATTTGCAACGCTAGCAGATACTATCAATGTTATGAATAATCACACACTGATTACTCATTTCGGAGTTGAACCAACTACTGCGAGgtgaataaaatttt--------aaa
i caeJap4.Scaffold18194 C 0 I 229
e cb4.chrX              8388182 3050 + 21540570 I

a score=-1906.000000
s ce10.chrX             3299084 74 + 17718866 CAGATTAACTTTGGATCTGAGTTATTTTTTATGGTAGGTGTTTTTTGGAATTGACGAAAATTTTCATTGGTGTG
s caeRem4.Crem_Contig0   460817 13 -  4500979 --------------------------------------------------------aaaaactgCAGTA-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1735166  0 +  4147112 C
e caeJap4.Scaffold18194  507028 229 -   823664 I
e cb4.chrX              8388182 3050 + 21540570 I
e caeSp111.Scaffold629   571233  0 - 33334924 C

a score=-19743.000000
s ce10.chrX             3299158 88 + 17718866 ACTTTGAATGT---AATCGAAAAAGTATGGTGTTACATAATACAATATTACTATAATTCTGAAAATTTAAATCATAAGAAAAAAGTTGT--AA
s cb4.chrX              8391232 43 + 21540570 -------ATCTcgaatttca--------------------------------------tcaaaaaactaattt-catCAAGAAACTTAA----
i cb4.chrX              I 3050 C 0
s caeRem4.Crem_Contig0   460830 17 -  4500979 --------------AAttca-----------------------------------------------taatt--------gaaaat-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571233 33 - 33334924 ----tcagttt---aaacCT--------------------------------------CTCATCACCTAATT-----------CATTAG----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735166 35 +  4147112 ----tgaatat---agttga--------------------------------------cagaaaaattaaag-----------aattgTAA--
i caePb3.Scfld02_0      C 0 T 2617
e caeJap4.Scaffold18194  507028 229 -   823664 I

a score=2420.000000
s ce10.chrX             3299246 69 + 17718866 CTTCTTATATTTACAGTGTTGGCGTTCTGAACTCAATTTTCGCAGTTACACATGAAACTGGAAACGCTC
s cb4.chrX              8391275 58 + 21540570 -----------TTCAGACTAGCAATGATGAACTCAATTATGACAACTACCCATGAAATCGGAAATGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   460847 58 -  4500979 -----------ttcagattggcTTTGATGAACTCAGTTATGACAACAACAACCGAAATAGGGAATGCGT
i caeRem4.Crem_Contig0  C 0 T 2617
s caeSp111.Scaffold629   571266 52 - 33334924 ----------------CATATCTGTTCTCAACTCTTTCATCACTTCTGCGGAAACTATCGGAACCTTA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732584 68 +  4147112 ATTTGCGTATTTGCAGTATATCATTTCTTAATTCATTCATCACATCTGCTGAGACTTTTGGAACGTTA-
i caePb3.Scfld02_0      T 2617 C 0
e caeJap4.Scaffold18194  507028 229 -   823664 I

a score=14621.000000
s ce10.chrX             3299315 78 + 17718866 -TCGCAATTATTTTTCTATTACCTGTTGCAGACTCAAGAGGCAGAAAATTTATGGCAGTTTATTTACGGTAGCATTTAT
s cb4.chrX              8391333 77 + 21540570 -TATCGATAATATTCCTCTTGCCTGTTGCTGATTACAAAGGAAGAACATTTGCAGCTATTCATCTTCGGTAACAATGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   458288 78 -  4500979 -TATCATTACTGTTTGTGATTCCGTTGGCTGAAacaaaaggaagaaaataTCTTGTCATTTACATACGGTAAGAATTTG
i caeRem4.Crem_Contig0  T 2617 C 0
s caeSp111.Scaffold629   571318 77 - 33334924 TTGGCATTACTTTTGATCATTCCGTTGGCTGAAAATAAGGGGA--AAGTTTCTTGTTGTGTACATGCGGTACGagtttt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732652 79 +  4147112 CTGTCCTTAATATTTATTTTACCGATTGCCGACACAAGAGGAAAGAAGTTGTTGATTGTCTACATGCGGTGAGAAAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507028 229 -   823664 I

a score=14930.000000
s ce10.chrX             3299393 134 + 17718866 TTTAAAGTTATTACTTCACAT--TAAATACT------TGATTACAGATTTGCATTATTATTTTTAACGGGATTTTTCCATTTGTTAGCCACTTCCTTCCAAGCTGCTGAAGCTTATACTTTGGGACAATT-GTTTCTTGGAAT
s cb4.chrX              8391410 126 + 21540570 ----------cttatttaaattttaaaaaaa------gaaatttagatTCGGTATCACAATTGCTGTTGCAGTATGTCAATTGTTAGCAGCGTGGTTTCAAGCATCTGAAATTTACATTCTCGGACAATTCATTCTG-GGATT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   458366 132 -  4500979 G----AGTCACtgtcaaaaacttttaaactC------CATCTTCAGCTCTGCTCTGACAATGCTTACTGCCGTTtgtcaaatattttcagcattcttCCAAGCCACCGAGTTCTATATTCTCAGTCAGTT-ATTCTACGGACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571395 133 - 33334924 atc--tctttttagATAGTACTTTAAGACTG-------AAATCTAGGTCTTCATTCACTGTTATTGCTGCCATCTGTCAACTCTCCTCTGCCTATTTCCAAGCTActgagtttttcattcttggTCAGTT-TTTCGACGGACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732731 135 +  4147112 G-----ATTACTGGATAACAC--CGAGGCAGTATGCCTAATTTTAGTTTCGGATTAACTATGGTATCAGCTATATGCCAATTGTCGTCAGCTTTTCTTCAAGCCACAGAATTCTATATTTTGAGTCGCTT-TTTTGATGGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507257 129 -   823664 ---TGTGAAAATATTTCATAATATAAA----------TAAGTTCAGATTTGTTCTGACTTTGACCACATCAATTTGCCACTTAACTGCTGCTGTTTTCCAAGCCTCTGAACTTTTTATCATTGGTCAGAT-ATTCTCAGGATT
i caeJap4.Scaffold18194 I 229 C 0

a score=3879.000000
s ce10.chrX             3299527 25 + 17718866 ACAAAGCCCGCTGCATTTGCTCATC
s caeRem4.Crem_Contig0   458498 25 -  4500979 TCAACATCCTCTCCgatcatttttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571528 25 - 33334924 TCATCATCCGCTGAGAACTTTTGTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732866 25 +  4147112 TCACCATCCCTTGAGGTCTTTTCTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507386 25 -   823664 ACAACTCCCACTTCGACTTTTTGTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8391536 25 + 21540570 I

a score=24623.000000
s ce10.chrX             3299552 46 + 17718866 ACGCCCATGTATATTTTAGAATGTGCTCCAGATAATTGTAGAG-----GTA
s cb4.chrX              8391561 44 + 21540570 acacaaatttttatattagAATGTGCACCGGACAACTGTAGAG-----g--
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   458523 46 -  4500979 acatttatGTATGTAACTGAATGTGCACCTGACAAAAACAGAG-----GTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571553 51 - 33334924 ACGTTCATGTATGTAACGGAGTGTGCACCGGACAAGAATAGAGGATTTGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732891 46 +  4147112 ACATTTATGTATGTAACAGAGTGCGCTCCTGACAAAAATAGAG-----GTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507411 46 -   823664 ACTCTGCTTTTTATCACAGAATGCGCTCCTGATAGGTACCGAG-----GTA
i caeJap4.Scaffold18194 C 0 I 170

a score=-10118.000000
s ce10.chrX             3299598 38 + 17718866 AATTTCAA---TTTATGGAATTTCAA---CAATTTTTGTAATTC
s cb4.chrX              8391605 44 + 21540570 taatttaaaaatgtgtATAATATATACagcaaatttcgaatttc
i cb4.chrX              C 0 T 3467
s caeRem4.Crem_Contig0   458569 39 -  4500979 TACTACAAAATTGGGAGTGATTTTCA-AGTAAACTC----TTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571604 38 - 33334924 TGCATTGCACTT----GTAATTCTGAATGGAACTGTCAAAAT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1732937 37 +  4147112 GGcaatgaa-------atatttattatcAGAAATATCAGTTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507457 170 -   823664 I

a score=-7859.000000
s ce10.chrX             3299636  81 + 17718866 AGGATTTGCAAGTACTGCTTTAATTTTCTCATTTTCGATTGGAAA--ACTGTTAATGTAAGATTGTTTCATTTATTC-------------AAAAAT------------------
s cb4.chrX              8388182  57 + 21540570 aggatttgcAAGTACAGCACTGATTTTTGCACAAGTGGTTGGGAG--AATGTTATTGTA-------------------------------------------------------
i cb4.chrX              T 3467 C 0
s caeRem4.Crem_Contig0   458608  76 -  4500979 AGGATTTGCATGTACAACACTGCTTATTTTGAATGGAATCGTCAA--AATGATAATGTATG--------------TC-------------ACAAGGCTTACACGT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   571642 102 - 33334924 -GGCTATGTGAgtac----ttgttt---ttcattggtATTCCACAATCATATAAACGTTTG--CGCtttctt--tccgaaaaaaatttaagaaagCTCTGGTCATTTATGCCAT
i caeSp111.Scaffold629  C 0 I 47
s caePb3.Scfld02_0      1732974  98 +  4147112 AGGATTTGCATGCACAGCTTTGATTATATTGAATGGGATGGTACG--CATGGTAATGTAAG--------------TCGAGATATATTGCGAAAAATCTGCGTCATTTCTGGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507457 170 -   823664 I

a score=-6364.000000
s ce10.chrX             3299717 22 + 17718866 -------------TCAATTCTCTACATTA----------AAAAA------------------------------------A
s cb4.chrX              8388239 15 + 21540570 ---------------AGTTTCCCTACTTA---------------------------------------------------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   458684 68 -  4500979 -------------CCAATTTTCTGACTGAAAGttggtcaaaaaatagtttgaactTCTGCAATTGAATTGACAGAAAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1733072 45 +  4147112 TCCTTTATATTCTTTTGATCTCtagctgaaaatcagaataaaaa------------------------------------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507457 170 -   823664 I
e caeSp111.Scaffold629   571744 47 - 33334924 I

a score=-1803.000000
s ce10.chrX             3299739 7 + 17718866 --ACACATG
s cb4.chrX              8388254 7 + 21540570 --TTACATA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   458752 7 -  4500979 --TGATAAC
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      1733117 7 +  4147112 --ttatatg
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold18194  507627 7 -   823664 aaccaaa--
i caeJap4.Scaffold18194 I 170 C 0
e caeSp111.Scaffold629   571744 47 - 33334924 I

a score=49850.000000
s ce10.chrX             3299746 255 + 17718866 TAAATA---------------TTTAACTT--C------TCAATTC-AGGTTCTCAGCTGCGTCTCCTACATTTCTCGGAACTATAGACTCTTGGTTTATTATTCCGCTGTTTGAGATGGTATGGTAAGA------ACTTGATTATCAAAAATTAT----TCTA--TGCAACATTAAATCTCAGCTCCGTG--ATGATTCTTTGCC-TAATG-------ATTCATCTGCCGGACTCACCGAAATGGCTCATTCAGCAAAACAAGGTTAAAAAAGCAGAAGACTCCATAAAATTTTATTATGG
s cb4.chrX              8388266 244 + 21540570 ---------------------GAAAATTC--C------T---TGCTAGGTATTCCTTGGGCTCTCCAGGAATTTTCGGTACAACTGGGTTGTggttcatttttccagtttttgtgGCTGTATGGTAA--------GCTTCTAGAAACAACTT-------TAAA--Cttgacattg------aaaaattcagctCAGCTCTAATGCTCATTA--TCACTTCTAAGTTACCAGACTCCCCTAAATGGTTGGTTTGCCAGAATAGAGTTGAAGAAGCTAAAAGAGCGATAAATTATTATCATGG
i cb4.chrX              I 5 I 44
s caeRem4.Crem_Contig0   458765 269 -  4500979 CAAGTTTCAATATAGTAAATTGACAGTTT--C------T---TGC-AGGCTACCAATAGCGTCACCTTCAGTCTTTGGTAAATCTGACACCTGGTTTGTGTTTCCATTAACTGCTCTGATAAGGTGA--------AATTCAAAGTACAACacagaaaaatcaa--ctgaatattgtttttcagcaattta--tTAATCTTAGTGC-CAGTA-------TCCAAACTGCCAGAGTCTCCGAAATGGTTGGTTTGTCAAAACAGGATGACAGAAGCAAAAGAGTCTGTAGAATACTATCATGG
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   571791 259 - 33334924 TAAATGTCAT-----------TTTACTTTGGT------T---TGC-AGGTTACCAATAGCGTCACCAGCTATCTTCGGAAAAGCTGACACTTGGTTTGTGTTCCCTCTTGTGGCATTGATAAGGTTTG-------ACCGCAGAGTACAATATCGGCAA-TGAA--GCAAATAATT----TCAGCTGTGTT--Ctgattttgattc-ttttg----acTTCGCGGTTACCAGAATCTCCAAAATGGCTTGTATGTCAGAACAGAATAGAGGAGGCAAAGAAATCTGTTGAATACTATCACGG
i caeSp111.Scaffold629  I 47 C 0
s caePb3.Scfld02_0      1733168 253 +  4147112 TAAATGTCAA-----------ATCAAACT--T------T---TAC-AGGCTTCCCATAGCGTCACCAtcatttcttggaaaatcGGACACTTGGTTTGTGTTCCCGCTTGCCGCACTGATAAGGTTT----------TGATTAGTACAAAATCGACAG-TAAACTACTAacattt----tcagtggtttt--ctGAACTTG---T-TTTTG----ACTTCGCGTTTACCAGAATCACCGAAGTGGTTGGTGTGTCAGAATAGGatggaagaagcaaaaaagtcgGTTGAATACTATCATGG
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold18194  507634 268 -   823664 aaaata---------------tttattct--tGCGAAAT---TAC-AGGTTCTCAGTTGGCTCTCCGAATGTTCTCGGAAAAACGAACACCTGGTTTATCTTTCCACTTTTTGTCATGATAAGGTGAGAAGTCATAATCAACAGAGAAAAAGCGCAGT-TAAA----AATCATTG----ATAACTTCCAG--TTCGTGTTTCAAC-TTTTGCATAACAGCGCGATTGCCAGAGTCTCCAAAATGGCTTGTGAGGCAGAACAGAATGGAAGAAGCTGCAAGAGCAACGGAGTTTTATCACGG
i caeJap4.Scaffold18194 C 0 C 0

a score=5742.000000
s ce10.chrX             3300001 19 + 17718866 AAAACACTGTCATTTAGGT
s caeRem4.Crem_Contig0   459034 19 -  4500979 AAAAGATTGCTTCTCAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572050 19 - 33334924 AGAGGAGTGTTTCTCTAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733421 19 +  4147112 AGAAGATTGTTTTGCAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507902 19 -   823664 GCATGACTGTTCTATAGGT
i caeJap4.Scaffold18194 C 0 I 319
e cb4.chrX              8388510 44 + 21540570 I

a score=-7097.000000
s ce10.chrX             3300020 28 + 17718866 TGGTTTAG-TAAACTTAAAGTT---CCAAAAA---
s caeRem4.Crem_Contig0   459053 29 -  4500979 AAAAGAACCTATTAtgggaaat---ttgagaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572069 29 - 33334924 ATG------TAAAACTTGAGAtgtcttgaaaaaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733440 30 +  4147112 AGGA-----CACTAATTTAATTTAATCGGGACAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507921 319 -   823664 I
e cb4.chrX              8388510 44 + 21540570 I

a score=28744.000000
s ce10.chrX             3300048 131 + 17718866 ATTTTATAGTTTCGAG---TTTTAGATGAAGTTGTGACGTCTCTCATAAAAGAGAAAAACTTAACAAAAGATAATCGAATTTCTTTGAGACAAATATGGGAAAATGATACATTGAGAGAGGTAAACTTGAAAAT---
s cb4.chrX              8388554 119 + 21540570 attttgtattT----AAGTTTTCAGACCAAGCTTTAAGTTCTttaatcaaagaaaaaaacctgACCACCGAAACCAAGTTGTCTTTCAAACAAGTAATAGGAGATGAAACTATGAGAGAAGC-------A-------
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   459082 119 -  4500979 at----tattt----a---tttcaggtGGCGTGCTTATGTCACTcctcaaagaaaaaaacttgacaGTAGAATCTCATGTAACTTTGAATCAAGTTTGGGAAAACGACACTTTGAGAGAGGT-------GGAAGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572098 112 - 33334924 --------act----g---tttcaggTGGAATATTATTGTCTTtcatgaaagaaaagaatttgacTAGAGAAACTCACATTACTTTGAAAGAAATATGGGAAAATGACACGATGAGAGAggt-------aaaat---
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1733470 119 +  4147112 --------AAT----A---TTTCAGATGGTGTTTTACTCAACTTCATCAGAGAAAAGAACCTGACAGAAGAATCTCACATTTCATTGAGGGAAATCTGGGAAAATGATACATTGCGCGAGGttgctttgaaaat---
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold18194  507921 319 -   823664 I

a score=-5719.000000
s ce10.chrX             3300179 27 + 17718866 ATTTTTTGTTTAAATGAGGTTACATTT---------
s cb4.chrX              8388673 10 + 21540570 ---CTTAATGTTA-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459201 26 -  4500979 -GCTTTGATGCTA---------cgtcacaaactttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572212 28 - 33334924 ---ttttctgcCAATGAAAC--CATACCAATCT---
i caeSp111.Scaffold629  I 2 I 3
e caePb3.Scfld02_0      1733589 29 +  4147112 I
e caeJap4.Scaffold18194  507921 319 -   823664 I

a score=29431.000000
s ce10.chrX             3300206 123 + 17718866 TTCTTCAGAGTCTAAAAATATTATTTGCCGTTACTGTTTTTCTTCAATTTGATACCACAACGGCTCAATCGGTATACACAATTGATTTTCACAAAACAGCTGGATTTACAGTGCAAGAGGTTG
s cb4.chrX              8388683 100 + 21540570 ---------------------TCTTTGCGATTACATTCTTCTTCCTGCTCGACGGAACAAGTAGTCAATCAGTTTATACAGTCGTCTTACATAAAAATGCGGGTTTCTCAGTTCAGGAGGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459227 123 -  4500979 ttttttagggTTTCAAAGTGCTGTTtgcctttttgtttttcttccttctggATTCGGCTAATGTTCAATCAATGTACTCTGTCCAGTTACACCAAAGTGTGGGATTCACTGTTCAAGAGGTTG
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold629   572243 123 - 33334924 GTCTTCAGGGTCTGAAAgttctgttttcattttcatttttcatgattttcgATTCGACCAATGTCCAGAATATGTATTCCGTGCAGTTACACCAAGATGCGGGTTATACGGTTCAAGAGGTTT
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1733618 123 +  4147112 tatttcagggGCTGAAAGTATTGTTCTCATATTTGTTCTTTATGTTATTTGACTCAGCTAATGTTCAAGCTGTATATTCCGTACTACTTCATCAATCAGCCGGCTATACGGTTCAGGAAGTTA
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold18194  507921 319 -   823664 I

a score=-1613.000000
s ce10.chrX             3300329 18 + 17718866 AAAATAAAAATTTTTATC
s cb4.chrX              8388783 10 + 21540570 --------AATAGGAACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   572366 13 - 33334924 -----CAAAGTTGAAAAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733741 13 +  4147112 -----GAAATATTGAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507921 319 -   823664 I
e caeRem4.Crem_Contig0   459350 37 -  4500979 I

a score=-3363.000000
s ce10.chrX             3300347 15 + 17718866 -----GTAGA--ATTGTAAATT
s cb4.chrX              8388793 15 + 21540570 -----GTATC--CTTGTAGATT
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold629   572379 15 - 33334924 -----ATAGG--TGTGTAAAAT
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0      1733754 17 +  4147112 -----ATTGGAATGTTCAATGT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194  508240 15 -   823664 aggaaattga--cattt-----
i caeJap4.Scaffold18194 I 319 C 0
e caeRem4.Crem_Contig0   459350 37 -  4500979 I

a score=35386.000000
s ce10.chrX             3300362 132 + 17718866 TTCAGGCGTTGAATATAAACTTGATCCTCACAACTGTCTTGTTCCCCACCAAATTCATCGGTACATTA----TTTTTAGATGCATTGGGAAGAAGGCCTGCTATGGGAGTTGCTGGTGTGATGAAGTGAGCT--GAAT
s cb4.chrX              8388822 136 + 21540570 ttcagacaatgaaCATTAGCCTGATTTTGGTTATTGTGTTTTTCCCTACTAAGTTTATTGGAACATACATAATTGATGCACTGGGAAGG-AGACCAGTTATGCTACTAGGTGGAATAATT-TGGTAAGATTCACCTAT
i cb4.chrX              I 14 I 1
s caeRem4.Crem_Contig0   459387 134 -  4500979 TTTAGGCTCTCAACATCAACTTGATTCTTTCAATTGTATTCTTCCCAGCGCAGTTCCTTAGCACAGTT----TTGTTAGACTGGATTGGTAGACGTCctgtctttttcatttcagcaGTTCTAATGTAGTTCCCCAAA
i caeRem4.Crem_Contig0  I 37 I 1
s caeSp111.Scaffold629   572400 132 - 33334924 AACAGGCTCTTAACATCAACTTAATTCTTCTCATCGTATTTTTTCCAACCCAATTCTTTGGTTCATTT----CTAATAGACAATCTTGGGAGACGACCTGTCATGCTGATAGCGGGATTATTAACGTGAGAA--CAAT
i caeSp111.Scaffold629  I 6 I 24
s caePb3.Scfld02_0      1733777 134 +  4147112 TACAGGCTCTAAACATAAACTTGATAATGACGATGGTATTTTTTCCAACACAATTCTTCAGCACTTTT----CTGCTCGACTACCTCGGACGACGACCGGTCATGTTGATTGCAGGAATACTGACGTACTCACTCAAT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194  508255 132 -   823664 tttaggCAATGAACATTAATTTGATACTAACCGTTGCGtttttccccacaaagttCATTGGGACATAC----ATAATCGATGCTCTCGGAAGAAGGCCTGTCATGGCAATCGGTGGAATCATTATGTGAGTT--GAGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-3299.000000
s ce10.chrX             3300494 5 + 17718866 CTTTA----
s cb4.chrX              8388959 1 + 21540570 ---C-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   459522 2 -  4500979 ---CA----
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold18194  508387 5 -   823664 ----atcta
i caeJap4.Scaffold18194 C 0 I 1096
e caePb3.Scfld02_0      1733911 0 +  4147112 C
e caeSp111.Scaffold629   572532 24 - 33334924 I

a score=-3152.000000
s ce10.chrX             3300499 22 + 17718866 CCGTATTTCCGTAAATTTTGAT-----
s cb4.chrX              8388960 12 + 21540570 ----------AGATTTATTAAT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459524 22 -  4500979 TTGAATTGCAATAGTTATTGTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1733911 25 +  4147112 --CAACCCCAGATCTTACGAATTAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508392 1096 -   823664 I
e caeSp111.Scaffold629   572532 24 - 33334924 I

a score=-4318.000000
s ce10.chrX             3300521 31 + 17718866 -TT-TAGATAC---TCAAAATCCATGTTGTTATTGG---
s cb4.chrX              8388972 39 + 21540570 CTGTTCGGTTCAGTTTCTCTAAATCAGTTCTGATGATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459546 34 -  4500979 TTG-CAGGTAC---TTCGCAAGTTGGATTGTTCTGATC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572556 31 - 33334924 -TT-CAGATAC---GTCATGACCTGGTTAATTTTGA---
i caeSp111.Scaffold629  I 24 C 0
s caePb3.Scfld02_0      1733936 31 +  4147112 -TG-TAGGTAT---TCTATGTCCTGGCTAATTTTGA---
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold18194  508392 1096 -   823664 I

a score=810.000000
s ce10.chrX             3300552 25 + 17718866 CTTTTGAAATTTTGGTGTTCATCAG
s cb4.chrX              8389011 25 + 21540570 CGACCCAACTTGTGATTCACTTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459580 23 -  4500979 --ACCCAGTTGATTGTGTTCTTCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572587 25 - 33334924 TTACTGAATTCATCATATACTTCTC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1733967 25 +  4147112 I
e caeJap4.Scaffold18194  508392 1096 -   823664 I

a score=-666.000000
s ce10.chrX             3300577 102 + 17718866 CGGATCCAGTTTGATCACAAAGATCATGTGTAAGTGAACAC--ATCAAACATTAACCATA----TGACC---AATT--TGCAGATGTTGCGGTTGAA---CTGTTAAC--CATCCTTG
s cb4.chrX              8389036 106 + 21540570 TGGAGAGAGTTTGCTGACAAAAATGATGTGTAAGCATTTGG-----ATACACTGATACTTC---AAATCAATAAGG--TTCAGACGTTGCCGTCGAGAGTTTGACTGC--AGCAATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459603 105 -  4500979 CGGTCCCAGTTTGCTAACCAAGATTATGTGTAAGTAAAAGAAAATTACAAACTGACTTTGT---TATTc---atat--ttcagatgtttctaTGGAG---TCTATTGG--ACAGATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572612 101 - 33334924 CGGGCCGAGCTTGTTGACAAAAATATTATgtttgtttccat---ttt----ttaacATTCTAAACACTC---AATT--TTTAGATGTTCTCATGGAA---TGTACAAG--ATGTGCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733992 105 +  4147112 CGGCTCAAGTTTGTTAACCAAAATTTTATGTTAGTTGCCGT---TTGGCTATCAGTATTC----CACTT---TGTTAATTCAGATCTCGTGATGGAG---GTTCTTAGCAATGCGTCG
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold18194  508392 1096 -   823664 I

a score=34610.000000
s ce10.chrX             3300679 88 + 17718866 TTCCAGTGACAGGTGCAAACTCAATAAGAGTGTTGTTTGTTACAGAATTGTTTCCACCATCTGCAAGAACAGCAGTTGGACAGGTCAG
s cb4.chrX              8389142 85 + 21540570 C---TGCGACTGGAGTCAATACTCTACATGTACTATTTATATCTGAATTGTTTCCCCCATCTGCACGAACATCCGTAGCACAGGTGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459708 85 -  4500979 CTAGTAACACAGGAGTCGCAATCCTTAGAATTCTCTTCATCACCGAACTTTTCCCACCTTCTGCACGAACATCAGTTTCACAGGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572713 85 - 33334924 CTGGTAACACTGGAGCATTTTCTCTCAGAATTTTGTTCATCACAGAGTTATTTCCCCCATCAGCTAAAACTGCAGTTTCTCAAGT---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734097 83 +  4147112 TTG--AACACTGGAGCTACGGCGTTAAGAATACTTTTTATTACGGAACTGTTTCCTCCGTCTGCTAAAACCGCGGTTTCACAAGT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509488 88 -   823664 TCCCGGCAACTGGAGTCACTTCGCTGGGAATTCTCTTCATCACCGAACTATTTCCACCATCGGCAAGAACATCAGTTGCTCAAGTCAG
i caeJap4.Scaffold18194 I 1096 I 37

a score=-15519.000000
s ce10.chrX             3300767 94 + 17718866 TTGAATATATCATGAGACAGAACATATTCTGAAAATGACATAAGTGACTGAATTATAATGCCACCCTCGTGGTGGGCATCATTCAATCAGCTTG
s cb4.chrX              8389227 45 + 21540570 TGGAAACTA-------ACataattgtctgaaaaaag----------------------------ctCGGCCCGCTGCAAG--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459793 20 -  4500979 --------------------------------AAAT----------------------------CTTGGTGCTTAGCcat--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572798 21 - 33334924 -------------------------------AAATT----------------------------CCCATTATCAATCAAC--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734180 28 +  4147112 -----------------------ATACTTTAAAATT----------------------------CTTCATGCTGAGCAA---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509576 37 -   823664 I

a score=39419.000000
s ce10.chrX             3300861 195 + 17718866 ACGTTTTCTTTTTTCTAACTTTGATATCAT---AATTCTCATCATCACAAAAAAGTTT-----GCAGGCAATGTTGTTTGGTTCAATGGCGGTCAATTCACCAATTGTAGCATTATATCCTATAGTCAACTCAATTTTCCCTCCAATATTTTTTGTACCATTTGTAATTTCACAAATGATATTTGGAATATATTTATACAGGT
s cb4.chrX              8389272 163 + 21540570 ------------------------TATGCTCAATATTG----------ACAAATGTTT------CAGGTTTTGCTAATAACTGCAATTGTCATTGATTCTCCACTACTCTCACTATTCCCATTTGTGTATTCTATTTTCCCACCGGGATTTTTTGCGCCATTTgcaatatctcaatttttcttcggAATTTATCTGTACAGGT
i cb4.chrX              C 0 I 226
s caeRem4.Crem_Contig0   459813 157 -  4500979 ------------------------taaaat---tattg------------aaatgttt-------AGGCAATGCTATTTGCAACTTTGGCGATGAACTCATCTCTAATGTCGTCTTTCccagttttgttttctttttttccaccGGGATTTTTCATGCCATTTGTGGTCACTCAGCTGATATTTGGTGTGTACATGTACAAGT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   572819 156 - 33334924 ----------------------------CC---GATTA----------CAATAAGTTT------CAGGCAATGCTCTTCATAAACTTAGCCATGAATTCTTCTCTaatgtcttcttttccaattttataTGCATTTTTCCCTCCAGGCTTCTTCATACCATTTGTTGCTACCCAATTAGTCTTTGGTGTTTATTTGTATAAGT
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1734208 154 +  4147112 -----------------------------T---AATTT----------CATCTGAATT------CAGGCGATGTTGTTCACCAACTTGGCTATAAATTCTTCACTGATGTCAAGTTTCCCTattttgtattcatttttcccgCCTGCGTTTTTTACTCCTTTCGTGTTCACACAATTAGTGTGTGGAACTTTCTTATACAGG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509613 153 -   823664 --------------------------------------------------aattgtttttttttcaggcaaTGATGTTAGGTTCAATTGGTCTCGCTTTTCCAATCAGTTCATCATTTCCAATAGTTTACTCGTTCTTCACACCGGGATTTTTTATGCCCCCTATAATCACCCAATTTCTGTTAGGAACGTACTTGTTCAGGT
i caeJap4.Scaffold18194 I 37 C 0

a score=-3870.000000
s ce10.chrX             3301056  5 + 17718866 -TTTG-C------
s caeRem4.Crem_Contig0   459973  5 -  4500979 -tttgt-------
i caeRem4.Crem_Contig0  I 3 I 2539
s caeSp111.Scaffold629   572982  4 - 33334924 -TTTC--------
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1734362  4 +  4147112 -TTTG--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509766 11 -   823664 ATTGG--TTGCAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8389435 226 + 21540570 I

a score=-62.000000
s ce10.chrX             3301061 3 + 17718866 ACT
s caeRem4.Crem_Contig0   462517 3 -  4500979 AGT
i caeRem4.Crem_Contig0  I 2539 C 0
s caeSp111.Scaffold629   572986 2 - 33334924 -AC
i caeSp111.Scaffold629  C 0 I 2455
s caePb3.Scfld02_0      1734366 2 +  4147112 -AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509777 3 -   823664 ACT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8389435 226 + 21540570 I

a score=28086.000000
s ce10.chrX             3301064 167 + 17718866 ----TTTAAGTTATCCAGTTAAAGCTT-------TTTATTTAGACATATGCCAGAGACTCGAGGTCGTGCGGTCTATGATATCATTGAATCTTTAGACAGGAATGTGGCTTCAAGGGttattaatttaaatagttttaaaatctgtt-aattataaat----ttttCAGACTGCATCAGTTAC
s caeRem4.Crem_Contig0   462520 161 -  4500979 ----TTTAACTTGCTCTCATGTATTAT-----------TTTAGACATATGCCAGAAACTCGAGGGCGCGCAGTTTATGACATCATTGAGTCTATGGATAGAGATGTTGGCTCAAGGGTACT---TTCAATGATCATT--CAGtagtt--ttctaaaattatgttttcaggCTGCATCAATTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575443 154 - 33334924 ----ttaaagGAATTC----------T-----AAGAATTTTAGGCACATGCCAGAAACAAGAGGTCGCGCTGTATACGATATCATTGAGTCACTAGATAGAGACGTTGGTTTCAGGGTaa----ggaaaaaattctttccaGCTgac--atttcgaat----tttataGGCTGCGTCGGTTTT
i caeSp111.Scaffold629  I 2455 C 0
s caePb3.Scfld02_0      1734368 154 +  4147112 ----CATGGGGCATTCATTTATACCAT-----ACGTTATTAAGGCATATGCCGGAAACTCGAGGTCGTGCTGTGTGTGATATTATCGAATCAATGGATGAAGACGTTGCATCAAGAGT--------------TTGTTCACATTGGGT--ATAAttaat----tcaacaaaaaaaatcaatttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509780 174 -   823664 TTTCGATTAGATACACAAATTGATGATGTGGAACGTTTTATAGGTATATGCCGGAGACTCGGGCTCGAGCGGTTTGTGATATTATTGAGGCTATGGATCAGGAAGTTGCATCCAGGGTA-----AACGgagattttttaaatctttcttgtatagaaa----atttcagactgcaTCAGTTCT
i caeJap4.Scaffold18194 C 0 T 2791
e cb4.chrX              8389435 226 + 21540570 I

a score=-241.000000
s ce10.chrX             3301231 44 + 17718866 AGATGAAAACACTCCTCTGTTTAAAGA---------CCAAGTAAGTTTTTTTT------------
s caeRem4.Crem_Contig0   462681 44 -  4500979 CGAAGAAAAACTACCTCTTATCAGAGA---------TCGAGTAAGTTTATCAT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575597 44 - 33334924 CGAGGAGAAATTGCCATTGATAAGAGA---------TCGGGTGAGATCATGAT------------
i caeSp111.Scaffold629  C 0 I 26
s caePb3.Scfld02_0      1734522 60 +  4147112 -----agacGTTCTCATTCATAGGAGAGAGCACTCCTTTAATGAAATCGAGAGtatgtttttatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389435 226 + 21540570 I

a score=-829.000000
s ce10.chrX             3301275 1 + 17718866 T-
s caeRem4.Crem_Contig0   462725 1 -  4500979 -A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1734582 1 +  4147112 t-
i caePb3.Scfld02_0      C 0 I 2476
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389435 226 + 21540570 I
e caeSp111.Scaffold629   575641 26 - 33334924 I

a score=-395.000000
s ce10.chrX             3301276  6 + 17718866 TCAA----AA
s caeRem4.Crem_Contig0   462726 10 -  4500979 TGCAGTTTAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1734583 2476 +  4147112 I
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389435 226 + 21540570 I
e caeSp111.Scaffold629   575641 26 - 33334924 I

a score=-440.000000
s ce10.chrX             3301282 5 + 17718866 AAATG--
s caeRem4.Crem_Contig0   462736 5 -  4500979 --ATGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1737059 5 +  4147112 AATTG--
i caePb3.Scfld02_0      I 2476 C 0
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389435 226 + 21540570 I
e caeSp111.Scaffold629   575641 26 - 33334924 I

a score=-5757.000000
s ce10.chrX             3301287 24 + 17718866 CACCCAAGTACCTAAGAGCTTATA-------------------------------
s cb4.chrX              8389661 10 + 21540570 ---CT-----------ATCATGAA-------------------------------
i cb4.chrX              I 226 C 0
s caeRem4.Crem_Contig0   462741 13 -  4500979 AATCC-----------GAATTGAA-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1737064 39 +  4147112 ----------------AACCTGAAGTTGCAAACTTTCatatcaatcaaaatttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e caeSp111.Scaffold629   575641 26 - 33334924 I

a score=22560.000000
s ce10.chrX             3301311 77 + 17718866 TTTTCAGACAGAAAA---TCGTGATGGAAAATGGAATAGTCTCCTCAATACACCCCGAACAAGGGTAAAAT----AAATTTGTG---------
s cb4.chrX              8389671 80 + 21540570 CTTACAGGCAAGTACACTACTGGCGACCAAAAGGAATAGCATACTCAACACTTCTCGAGCACGGGTACAAGC-------------AAATTCTG
i cb4.chrX              C 0 I 1520
s caeRem4.Crem_Contig0   462754 86 -  4500979 CTTTCAGGCCAGAAC---TCTTGCAGTTAAACGGAATAGCATACTAAACACTCCTCGCACTCGGGTAAGAGCAC-aaagataagaaaatg---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575667 82 - 33334924 cTTTCAGGCCAGAAC---TGTCGCTGTAAAAAGAAATAGCATACTCAACACTCCTCGAACAAGGGTGAGAGCACAAAAGATAAGC--------
i caeSp111.Scaffold629  I 26 C 0
s caePb3.Scfld02_0      1737103 81 +  4147112 cttcCAGGCTCGAAC---TCTAGCTGCAAAACGAAATAGCATACTAAACACTCCTCGCACACGGGTAAGAGCAC-AATGATAAGG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509954 2791 -   823664 T

a score=6985.000000
s ce10.chrX             3301388 56 + 17718866 ----TACCTCCTCAGAACATTTTGTTTGCAGGCGTTGACTTTCGAGGAAAATTCTCATTC-
s caeRem4.Crem_Contig0   462840 57 -  4500979 ---ttAATGCTGCAAAATTGGTCTTTTTCAGGCGTTGACTTTTGACCACAAGT-TCAATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575749 55 - 33334924 GACGTG----CAAAATACAACCAATTTTCAGGCCTTGACCTTCGATCACAAGT-TCATTC-
i caeSp111.Scaffold629  C 0 T 2436
s caePb3.Scfld02_0      1737184 59 +  4147112 GACGTGATTTCTGCAAATATTCACTTTTTAGGCTTTGACCTTCGATCACAAGT-TCATTC-
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I

a score=2089.000000
s ce10.chrX             3301444 13 + 17718866 ACCAAATTGATGT
s caeRem4.Crem_Contig0   462897 13 -  4500979 AAAGAACTGACAT
i caeRem4.Crem_Contig0  C 0 T 2541
s caeSp111.Scaffold629   573368 13 - 33334924 TAATAATTTGTAT
i caeSp111.Scaffold629  T 2436 I 5
s caePb3.Scfld02_0      1737247 13 +  4147112 AAAGAACTGACAT
i caePb3.Scfld02_0      I 4 T 2059
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I

a score=381.000000
s ce10.chrX             3301457 13 + 17718866 -AAACATATATAGC
s caeRem4.Crem_Contig0   460369 13 -  4500979 AGTAcgaatacag-
i caeRem4.Crem_Contig0  T 2541 C 0
s caeSp111.Scaffold629   573386 13 - 33334924 -GTATGTATAAAGC
i caeSp111.Scaffold629  I 5 I 132
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I

a score=-899.000000
s ce10.chrX             3301470  98 + 17718866 TTAAAACAAAACCAAACCAATGGGTCATAAATACTCGTTTCATAGATCT----ATCATTTGTAGAT------------------------------TCTTACTCCAGCCAAATGTCAATTTT------------AAATCCCG------TG
s caeRem4.Crem_Contig0   460382 147 -  4500979 --aaaaaaagttaatgtAAATACCTCATGAGTACTC-CTTAATAGTGCTTATGAACTTTTGTAAATAAACATGAAATGTAatcaatttgttgtttttttcactgatatgaatcattatttttgtatgCTACATCAAGTTCCGATATGATG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I
e caeSp111.Scaffold629   573399 132 - 33334924 I

a score=-9167.000000
s ce10.chrX             3301568  90 + 17718866 --------------ATTTCCCTCAGTTAAA-----GTT----------------------------------------TTCCG---TTTACAA-----------------------------CTGTGGACGAATGAATTTTGTGAAATAAAATGTGCTA-GACAAAACA-------------------------CTTATAACTGTTG
s caeRem4.Crem_Contig0   460529 207 -  4500979 ATTGCAGGAAACATGTAGGCTGCCCTGGAAAAAGTGTTCTTGATAAGAGAATCAAGAACTGTCCTGATACCAGTTCAGTCTCAGTTTTTCCTGGTGTCACTTGCAAGTACGATGTTTTCTATTCCTAGGAATATTATTTTCATGATATTATGTTTTCTACTCTTGGATACCATTAACCAAATGCAAGTTCTAATGTTTTCATCATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573531 131 - 33334924 --------------ATTTGCCTACATGAACAACCAGTT---------------------------GATGTAGGTTCAGTTCCA---TTTCCTA-----------------------------TCAAAGGAAAAGAgcactttgaaaatgaaattctccA-TCCCAAGGAATATTCTGTATATGCTTATTTTA--TTTGTGACTTTTG
i caeSp111.Scaffold629  I 132 I 35
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I

a score=-221.000000
s ce10.chrX             3301658 29 + 17718866 T--AAAATAATGCAATACAATTAAAAGATGA
s caeRem4.Crem_Contig0   460736 30 -  4500979 TCCGAAGTGAT-CACTGCAATGAATAATCAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I
e caeSp111.Scaffold629   573662 35 - 33334924 I

a score=-6435.000000
s ce10.chrX             3301687  70 + 17718866 ACACTTGATACGG-CATTAT---------------GGCACATGTGTGTA-----------------------TAACGCAAA-------ATATTTTTAAT-TGATCATAATCACAATA---
s caeRem4.Crem_Contig0   460766  81 -  4500979 ACTCTTGTCTCA--CATTTCGGTTTGGAACCTACCGGAACACGGtaatt-----------------------tgcaaaaaactgCAGTAAAttcataat----tgaaaat----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573697 114 - 33334924 ACACTTGCTGAAGTCATTAC----TGAAATGAATAACCATACGTTGACTAATCATTTTGGGCTCGAACCGACTAAAACAAGGTGAAG-AATTACGTAGTGTGATACAAATCA-AATAAAG
i caeSp111.Scaffold629  I 35 C 0
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e cb4.chrX              8389751 1520 + 21540570 I

a score=-2262.000000
s ce10.chrX             3301757 4 + 17718866 ------TCAG
s cb4.chrX              8391271 4 + 21540570 --TTAA----
i cb4.chrX              I 1520 C 0
s caeSp111.Scaffold629   573811 4 - 33334924 CCCC------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1737260 2059 +  4147112 T
e caeJap4.Scaffold18194  509954 2791 -   823664 T
e caeRem4.Crem_Contig0   460847 0 -  4500979 C

a score=13393.000000
s ce10.chrX             3301761 44 + 17718866 TTCAGCCTTGCATTTGTTGATTCAATAATTACATCTAGTTACCA
s cb4.chrX              8391275 44 + 21540570 TTCAGACTAGCAATGATGAACTCAATTATGACAACTACCCATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   460847 44 -  4500979 ttcagattggcTTTGATGAACTCAGTTATGACAACAACAACCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573815 44 - 33334924 TTAAGATTGGCAATGATGAATTCGATTCTTACTTCTTCGAACGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735201 44 +  4147112 TTTAGCATTTCGATGATGAATTCCATAATGACAACAACCAATGA
i caePb3.Scfld02_0      T 2059 C 0
e caeJap4.Scaffold18194  509954 2791 -   823664 T

a score=17362.000000
s ce10.chrX             3301805 123 + 17718866 GGTTGGGAATGCTCTTTCAATTTTGTTACTGCTCCCAATTGTTGATTTCAAAGGCAGAAAGTTTGTGGCGGTTTATATGAGGT---ATTTT-GTTTGAATTAATTGTTAAGTT-----AAGTTAAAGTTGAT------
s cb4.chrX              8391319 117 + 21540570 AATCGGAAATGCTCTATCGATAATATTCCTCTTGCCTGTTGCTGATTACAAAGGAAGAACATTTGCAGCTATTCATCTTCGGTAACAATGT---cttatttaaattttaaa---------aaaaga---aat------
i cb4.chrX              C 0 T 2001
s caeRem4.Crem_Contig0   460891 112 -  4500979 AATAGGGAATGCGTTTTCAATTCTATTACTTTTACCAGTCTCTGATTTGAAGGGACGAAAATATGCTGCAGTATATTTACGGT---agttt---ctgatt--atttttgaa---------gtcaaa---gat------
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   573859 108 - 33334924 GGTTGGAAATTTTCTCGCAATTCTTCTCTTGCTCCCAATAGCTGATTTCAAAGGAAGAAAATATGTGGCAGTTTATATCCGGT---AACTTAAAtcgattaattttttgaa---------------------------
i caeSp111.Scaffold629  C 0 I 10
s caePb3.Scfld02_0      1735245 116 +  4147112 TGTCGGAAATGCTCTAGGTATTCTTTTCTTGGTTCCAATTGCAGATAACAGAGGTAGAAAATACGTTGCAGCCTATATCAGGT---GAACT---TCGAATTTCGTTTTGAAT-------AACCAAA---AAT------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194  507163 125 -   823664 GGTTGGAGTTTTTATTTCATTATTCTTTGTAATGCCATATGCTGAAACCAAAGGTCGGAAGTTTGCAGTTATTTACTTAAGGT-------T---TTGTGAAAAGTGTGAAAATATTTCATAATATA---AATAAGTTC
i caeJap4.Scaffold18194 T 2791 C 0

a score=60151.000000
s ce10.chrX             3301928 267 + 17718866 AGGTTCGTTTTGATTTTTTCCACTGGCGTTTGTCAATTGCTAGCTGCAGTGCTTGAAGCTTCAGAAATATTTATTTTGGGTCAGTTTCTTCTTGGAATACAAGGTGCACTTCGGTTTTTTGCGACGCAGATGTTTATTGTAGAGAGTTCTCCGGATAACTGTAGAGGTAACA--TACTAACTAGGTGAAAATTGTCAACTAAAATG-----TTCAGGTTTTGCAAGTGCTTTTCTAATATTTGCTTTTGTCATTACAAAACTGGTTATGTGAGT
s caeRem4.Crem_Contig0   461016 266 -  4500979 aggTTTGGTATAACGTTTGCATCTGCGTTGTGTCAGTTGTTAGCAGCTTGGTTCGAAGCATCCGAACTATACATACTAGGCCAGTTAATACTGGGATCTCATTATTCCTTACGTACTTTTGTCACTCTAATCTTTGTATTAGAGTGCGTTCCAGACATGTTCCGAGGTAATCTCAGCTCggaaattttaaatattga---aacatt-----tttaggTTTCGCGAGTACCatattcatgttttcattTGTATTCGCTAAAATGATCATGTAAGT
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629   573977 263 - 33334924 AGATTCGCCATCACATTTGCGACTGCAATCTGTCACTTGCTCGCATCATTGTTCCAtgcatctgaaatttatttaatAGGTCAATTCATTCTCGGACTCCATTATAGCCTAAGAACATTTGTATCTCCTATTTTTATCCTGGAGTGTGCCCCAAACAACTGCAGAGGTGATT------CATTAATTATATCAAACTTATTAAAAGT-----TACAGGATTTGTGAGCACCGCggtaattttttcctttgtcTTTGCGAAATGGATTATGTGAGA
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1735371 265 +  4147112 AGATTCGCAATTACTTTTGCAACCGCCATTTGTCAACTATTGGCAACATTATTCCAAGCTTCTGAAGTTTATCTACTCGGACAACTCATTCTTGGGTCTCATTATTGCTTGCGTACTTTTGTGTCAGCAATTTATATTCTTGAATGTGCTCCGGATAACTGTAGAGGTAACT--agaaaacaaatgataaaCATGCAATTAAGATT-------CAGGATTTGCTAGTACtgtactcattttttcttttgtctttgCAAAATTGATTATGTGAGT
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194  507288 270 -   823664 AGATTTGTTCTGACTTTGACCACATCAATTTGCCACTTAACTGCTGCTGTTTTCCAAGCCTCTGAACTTTTTATCATTGGTCAGATATTCTCAGGATTACAACTCCCACTTCGACTTTTTGTTACTCTGCTTTTTATCACAGAATGCGCTCCTGATAGGTACCGAGGTAGGA--GG--CACGAAATGTAAATAACTGGAAAAACGTCCAAGTACAGGTTTCGCCTCAACTGCTCTCGTCTTTTCCGACGTTATCGGGCAAACCATTATGTAAGC
i caeJap4.Scaffold18194 C 0 I 59
e cb4.chrX              8391436 2001 + 21540570 T

a score=-5411.000000
s ce10.chrX             3302195 19 + 17718866 GATCA-----------TTGAATCATATTTG
s caeRem4.Crem_Contig0   461282 19 -  4500979 GGGAA-----------ATggtctttttttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574240 28 - 33334924 TAAAACGCCAAGAAGCCAGAGTTTATTC--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735636 15 +  4147112 T---------------CTTATTTTATTCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507558 59 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=16133.000000
s ce10.chrX             3302214 107 + 17718866 ---AAAAAAAAA---------CATTAATTAAAATTTT------------TAGGTTTTCTGTCGCTTCACCGAACTTATTGGGAACATCACAGGTATGGTTTGTTTTCCCATTATTTGGAATGATAAGG-----T---AA
s caeRem4.Crem_Contig0   461301 107 -  4500979 ---gaattgtaG---------ACTT--------TTGT------------TAGGTTTTCTGCTGCATCACCGAGTTTGCTAGGAACGAGTTCACTTTGGttcatttttccaatcatTGTGATGATAAGGTAACATTTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574268  93 - 33334924 ---------------------CGTT--------TTCT------------CAGGTTTTCGACATCTTCTCCAGACTTATTCGGAACGACTTCATTATGGTTTGTTTTCCCGGTATTTGCAATGATAAGG-----TTTGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735651 108 +  4147112 ---GAGAAGGAAT------ATCATT--------TAAT---------TGACAGGTTTTCTGTCGCATCCCCAAATGTTCTTGGAACTAGTTCTTTATGGttcattttcccattatttGCGATGATAAGG-----TAGGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507617 123 -   823664 aaaaaaatgcaaccaaaaaaatatt--------tattcttGCGAAATTACAGGTTCTCAGTTGGCTCTCCGAATGTTCTCGGAAAAACGAACACCTGGTTTATCTTTCCACTTTTTGTCATGATAAGG-----TGA---
i caeJap4.Scaffold18194 I 59 I 67
e cb4.chrX              8391436 2001 + 21540570 T

a score=1877.000000
s ce10.chrX             3302321 57 + 17718866 CCGAAACAATAATTTATCAAAAAAAAAAAGAAACACAATT-TAAGTTCAACGATAGTT
s caeRem4.Crem_Contig0   461408 49 -  4500979 TTGCAAGAACTCCTTC---------AAGACGTACAAAATTATCAGTTCTGTTGCTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574361 48 - 33334924 ATAGAGTGATGCTTTT--------AAATACGACCATA--TATCAGTTCTGTTGGGATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735759 58 +  4147112 GTGATAACATgcattcttgaaaaaaaaaaccaccaaagTTATCAGTTCTGTTGCTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507740 67 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=35316.000000
s ce10.chrX             3302378 125 + 17718866 TTTTGTTTCATGGTGCAACTACCAGAATCTCCAAAATGGCTCATTCAACAAGATAAAGTGGAAGAAGCTAAAGTTTCGATCAGATTTTATCACGGAAAAAATT--GCACTATACGTGAGA----ATTTAAA--
s caeRem4.Crem_Contig0   461457 125 -  4500979 CTGTGCATGCTCACTCGGTTTCCTGAATCTCCAAAATGGCTCATTCAGCAGAACAGAGTGATGGAAGCGAGAGATTCAGTTCGATTTTATCATGGCGCTGATT--GTCATTTAAGTAAGA----CTTTCAA--
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold629   574409 117 - 33334924 CTTTGTTTGACTGTCCGCCTTCCGGAATCTCCCAAATGGTTGATCCAACAAAATAGGATTAGAGAAGCAAAAGAATCGATTCAATTTTATCACGGAAAGGACTCAGAAACTAGTG--------------AG--
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1735817 123 +  4147112 CTGTGTTTGACCGTTCGACTTCCGGAATCTCCCAAATGGCTCGTGCAACAAAACAGAATTAGAGAAGCAAAGGAAGCAATCCAATTTTATCACGGGCAGAGCT--GCAATTTGCGTATGG------TTCGG--
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  507807 131 -   823664 TTTTGCATAACAGCGCGATTGCCAGAGTCTCCAAAATGGCTTGTGAGGCAGAACAGAATGGAAGAAGCTGCAAGAGCAACGGAGTTTTATCACGGGCATGACT--GTTCTATAGGTATAAGAacacatcgaaa
i caeJap4.Scaffold18194 I 67 C 0
e cb4.chrX              8391436 2001 + 21540570 T

a score=-5907.000000
s ce10.chrX             3302503 26 + 17718866 A------TATTTGAA---TATTCCCAAACCCGTTC
s caeSp111.Scaffold629   574527 30 - 33334924 A----ACTATATGAACCTGGTATGCAAAGTTTTC-
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1735941 26 +  4147112 AGCGcaccatttgaa--------aaaaacctaat-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  507938 14 -   823664 ----------atgaa----gtaCAGTAA-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8391436 2001 + 21540570 T
e caeRem4.Crem_Contig0   461582 28 -  4500979 I

a score=45000.000000
s ce10.chrX             3302529 107 + 17718866 ATATTTTCAGATGAGGTGGTAACTTCTTTCATTAAAGAAAAAAACTTGACAGACAAAAATAGAATTTCTTTGAAGCAAATTTGGGATAACGAAACTCTTAGAGAAGT
s caeRem4.Crem_Contig0   461610 107 -  4500979 acaatttcagatgaagTTGTGACTTCAAtgatcaaagaaaaaaacttgacacatgaaaataaactttcaTTGCGTCAAGTATGGGAAAATGACACATTGAGAGAGGT
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold629   574557 104 - 33334924 ---TTTACAGACGAAGTTGTTACAtctattttgaaagagaagaaccTGACACAAGACAATAAACTTAGTTTACGTCAAATCTGGAGTGATGATACATTGAGAGAGGt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735967 104 +  4147112 ---tttccagatgagGTTCTCACATCtacaatcaaagaaaaaagtttaacaGAGGAGAAGAAACTAACATTGCGTCAAGTTTGGGAGAACGAAACTTTGAGAGAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507952 107 -   823664 ACAGTTTCAGAGGAAAAACTATCATCTTttatcaaagaaaaaaacttgaCTATTGAAGATAGAATATCTCTGCGACAAGTATTGGAAAATGACACATTAAGAGAGGT
i caeJap4.Scaffold18194 C 0 I 23
e cb4.chrX              8391436 2001 + 21540570 T

a score=-292.000000
s ce10.chrX             3302636 19 + 17718866 CAGTTTCACATGTTTTAAT
s caeRem4.Crem_Contig0   461717 18 -  4500979 -ATACTTGTGATTTGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574661 15 - 33334924 ----ttcattagttgaaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736071 17 +  4147112 AATATTCATTAGTTGAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508059 23 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=-3637.000000
s ce10.chrX             3302655 16 + 17718866 GAGCTATTCTATAGAC
s caeRem4.Crem_Contig0   461735 14 -  4500979 AA--TACTGcatgaat
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   574676  9 - 33334924 -------TTAATAAAA
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1736088  9 +  4147112 -------Tcctcaaaa
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194  508082 11 -   823664 aaattatCCCA-----
i caeJap4.Scaffold18194 I 23 C 0
e cb4.chrX              8391436 2001 + 21540570 T

a score=-1650.000000
s ce10.chrX             3302671 10 + 17718866 AAACAACTAT
s caeRem4.Crem_Contig0   461750  5 -  4500979 aaaaa-----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   574686 10 - 33334924 AAGTAGTTGG
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold18194  508093  6 -   823664 AATTAA----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1736097 12 +  4147112 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=30010.000000
s ce10.chrX             3302681 118 + 17718866 TTTAGGGGTTGAAAATAGTATTTGCACTGTTACTGTTTCTTGAATTTGACACATCGTATGTAACATCAGTTTACACTATTGATATGCATAAATCAGCTGGATTCACTGTTCAACAAGT
s caeRem4.Crem_Contig0   461755 118 -  4500979 tttaggcATTCAAAATCCTGTTAGCAGTATTGTTTTTCCTTGAGTTCGACACTACGTATATACTTTCTATTTACACAATAACTTTCCATAATACAGCTGGATTCAGTACACAAATGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574696 118 - 33334924 TTCAGGCTTCTAAGATTTTGTTAGCGGTTATAATGTTCATGGAATTCGATACGGCTTTCATGCAATCAACATACACGATTCTACTTCACAAAACTGTTGGTTTCAGTGTTTCTGCGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736109 118 +  4147112 tttaggcTTTGAAAATCCTGTTAGCCGTACTGATATTCCTTGAGTTTGATACGTCTTATGTGATATCAACTTACACATTGCTTCTGCACAAAACTGCAGGATTTAGTGTTATTGCggt
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194  508099 118 -   823664 TTCAGGCTCTAAAAGTACTTTTCTCAGTTTCACTTTTTCTCATATTTGACTCTGCATCAGTCCAGGGCACTTATACCGTACTACTTCACCAGCGCGCTGGTTTCACCGTCCAGGAAGT
i caeJap4.Scaffold18194 C 0 I 27
e cb4.chrX              8391436 2001 + 21540570 T

a score=-4466.000000
s ce10.chrX             3302799 23 + 17718866 --CTGTTTGCAAAGTTTCCAAATTC
s caeRem4.Crem_Contig0   461873 23 -  4500979 --TAGTTTACAATCACTCGGCTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574814 20 - 33334924 --GAttcattcaaagaaaaac---a
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736227 25 +  4147112 aagatttttttaataatgaactctg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508217 27 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=31392.000000
s ce10.chrX             3302822 144 + 17718866 ATTTCTTAC--TTTA----CAGGCACTGAATATCAATTTAATAATCACAATTTTCTCCCTACCCACAAAATTCTTCGGTACATTTTTATCAGATTCTATTGGAAGAAGGCCAATTTTTGTTATAGCTGCTCTTTTGCAGT---AAGTG-----AAGGT
s caeRem4.Crem_Contig0   461896 145 -  4500979 GGACATTGTA-GTTT----CAGGCAATGAACATCAACCTGATTATCACAGCTGTTTCGcttcccaaaaatttcattggAACATACATTCTGGATGCTCTTGGAAGGAGACCAACTCTGTTCATTGGCGGTCTGATGCtgt---aaataaataa-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574834 144 - 33334924 ataaattata-ttttgaTATAGGCAATGAATATAAATCTGATAATTACAACAGTACTCTTTCCAACAAAGTTTATTGGAACGTTTCTTCTTGATGCTCTTGGAAGACGACCAACATTATATATTGCTGGTTTTATGCAGT---AAGAA----------
i caeSp111.Scaffold629  C 0 I 26
s caePb3.Scfld02_0      1736252 143 +  4147112 attatttgaa-tttc----taggccatgaatATCAACCTTATTGTTACTATAGTCTTATTGCCAACAAAATGCATGGGTACCTTTATACTTGATGCTTTTGGAAGAAGGCCAACGATGATGATTGCTGGAACAATGCAGTTTGTAGAA----------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  508244 127 -   823664 --aattgacattttt----taggCAATGAACATTAATTTGATACTAACCGTTGCGtttttccccacaaagttCATTGGGACATACATAATCGATGCTCTCGGAAGAAGGCCTGTCATGGCAATCGGTGGAATC-------------------------
i caeJap4.Scaffold18194 I 27 C 0
e cb4.chrX              8391436 2001 + 21540570 T

a score=-4688.000000
s ce10.chrX             3302966 14 + 17718866 ---ATGATAGACATTGG-
s caeRem4.Crem_Contig0   462041 10 -  4500979 ---gaaaaagaca-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1736396  7 +  4147112 ------ACGGTAG-----
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  508371 14 -   823664 ATTATGTGAGTTG----A
i caeJap4.Scaffold18194 C 0 I 1066
e cb4.chrX              8391436 2001 + 21540570 T
e caeSp111.Scaffold629   574978 26 - 33334924 I

a score=-66.000000
s ce10.chrX             3302980 14 + 17718866 CTTAAAACTATAAG---
s caeRem4.Crem_Contig0   462051 14 -  4500979 ---caaattattgaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1736403 11 +  4147112 ---AAAGCTATCAg---
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold18194  508385 1066 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T
e caeSp111.Scaffold629   574978 26 - 33334924 I

a score=-117.000000
s ce10.chrX             3302994 124 + 17718866 -ATTATAGGTATTTCCGAACATGCATTATATTCA-GTCTTGAGATT-ACAATTTACATATTTGGATCGAGTTGGTTAACAAGAATTACATGTAGGCGGCTGTA--CAATAGTGTTAAAGTTGAGATCTA
s caeRem4.Crem_Contig0   462065 127 -  4500979 atgattcagaTATTCAAAATCTGTTTTACTTTTG-GCAACTGAAATCATCATTTATATTTCCGGTGCAAGTTTTTTGACGGAAAGTTTATGTGAGTGACCTAAAAGAGAATTGTTTG-agaatgaaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575004 125 - 33334924 -attttcagaatatcaaaaTCTGCGTTGATGCTG-GCAACCGAATCAATTGTATACGTCTCAGGGCCAAGTATTCTCACAGAAATGATGTGTAAGTTGCAAGAGTCAATAT--CTCATTTAGTAGTTTC
i caeSp111.Scaffold629  I 26 C 0
s caePb3.Scfld02_0      1736423 126 +  4147112 -tttttcagtgtCACCAAGTCAATTTTAATGCTATTCGATCAAATT-ATCATTTACTTTTCTAGTTCCAGTTTACTCACTGAAATTATCTGTAAGTT-CTTCATTGAATGTAATTTGTTGAGTTTACTT
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold18194  508385 1066 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=39466.000000
s ce10.chrX             3303118 133 + 17718866 TTTCCAGATAATATGGTTGAATTTTTGGCAGCACTTGTTTCAGCAACAGGTGTGAATTCTCTCCGCTTGTTGCTCACAATGGAATTGTTTCCTCCGTCGGCTAGGACAGTTATAGGACAGGTAAGAGATTTAC
s caeRem4.Crem_Contig0   462192 132 -  4500979 ttttcagatgttgTGGTAGAATTACTGTCATCATTGGCTCCTGCAACTGGTATGAATTCCATTCGAATTTTGTTCGTATCTGAGTTGTTTCCACCTTCTGCCCGAACAGCGGTTGGGCAAGTGAGTGCGct-c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575129 126 - 33334924 CCTTCAGACATTGTGGTTGAATCTCTTCTAGCATTAGTCCCAGCGACAGGAGCAAACTCTCTTCGGATACTCCTTGTCTCGGAACTATTTCCACCATCTGCAAGAACAGCTGTTGGACAAGTGAGG-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736549 126 +  4147112 TGTTTAGATGTTGTGGTTGAAAGTCTTGCTGCAATAGTTCCTGCAACAGGAGTTCATTCCATTAGAGTTCTCTTTGTATCGGAATTGTTTCCACCAGCCGCAAAAACTGCAGTTGGACAGGTGAGT-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509451 133 -   823664 TTTACAGTTATTAGCGTTCAATGTCTTGCCGAAGCAATCCCGGCAACTGGAGTCACTTCGCTGGGAATTCTCTTCATCACCGAACTATTTCCACCATCGGCAAGAACATCAGTTGCTCAAGTCAGATTTTcac
i caeJap4.Scaffold18194 I 1066 I 13
e cb4.chrX              8391436 2001 + 21540570 T

a score=-10793.000000
s ce10.chrX             3303251 82 + 17718866 TAATTGTGTTGAAAAAACGTAGAAGAAAGTAATATCGCAACATGGTGCATCGACGCAGGATTCAATGTATAAGGAATAGTCG
s caeRem4.Crem_Contig0   462324 34 -  4500979 taat---------------------------------------------tttcagcatgtCTTGAACcccaaataaa---ta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575255 28 - 33334924 T-------------------------------------------------TGAATGAGGGTTCAAAGTTTAATCAGA-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736675 28 +  4147112 TATT---------------------------------------------CAGCAGTACTTTTGGAAGTATTAC---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509584 13 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=33519.000000
s ce10.chrX             3303333 186 + 17718866 ------------------------TTTATTCAACACTGTAGAATTTGTTGATCAACTTTAATCATTATTTAAAGACGCAAATGATCGCCTCAATATTAATTGGCTTTCCGATTCTTTCTTCTTTCCCAATCATCAACACCATGTTTCCTCCCATCTTTTTCGTCCCATTTGTAATCACACAATTGCTACTTGGAATCTATCTTTTCAGGT
s caeRem4.Crem_Contig0   462358 145 -  4500979 ------------------------aattttc-----------------------------------------aggcGATGATGTTCATTTCTATGGCAATTAATACTCCTATCACAACTTTCTTCCCAATTGTAAACTCAATATTCCCTCCGATCTTTTTTGTACCTTTTGTTATAACACCACTGATTCTGGGCACCTATTTATATAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575283 142 - 33334924 ---------------------------ATTC-----------------------------------------AGGCAATGATGTTCTTCTCTCTTGGAATCAGCTCACCTATCATTTCGCTGTTTCCTATTATCAACTCTATATTCCCACCAATCTTCTATGTTCCGTTTGTTATTagtcaattgttttttgggatCTATTTATATCGgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736703 142 +  4147112 ---------------------------ATTC-----------------------------------------AGGCGATGTTATTCACTTCAATGGCGATAGGCACACCAATTCTATCCATCTTTCCAATAATCAACTCAATTTTCCCTCCTGCTTTCTTCATACCATTTGCGATTTCCCAATTTGTTCTTGGAATTTATCTGTTTAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509597 169 -   823664 tttaactaacattttaaattgtttttttttc-----------------------------------------aggcaaTGATGTTAGGTTCAATTGGTCTCGCTTTTCCAATCAGTTCATCATTTCCAATAGTTTACTCGTTCTTCACACCGGGATTTTTTATGCCCCCTATAATCACCCAATTTCTGTTAGGAACGTACTTGTTCAGGT
i caeJap4.Scaffold18194 I 13 I 50
e cb4.chrX              8391436 2001 + 21540570 T

a score=-90.000000
s ce10.chrX             3303519 3 + 17718866 TTG
s caeRem4.Crem_Contig0   462503 3 -  4500979 ATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575425 3 - 33334924 ata
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736845 3 +  4147112 TTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509766 50 -   823664 I
e cb4.chrX              8391436 2001 + 21540570 T

a score=-1731.000000
s ce10.chrX             3303522 2 + 17718866 TG-
s cb4.chrX              8389435 2 + 21540570 -AG
i cb4.chrX              T 2001 C 0
s caeRem4.Crem_Contig0   462506 2 -  4500979 -AA
i caeRem4.Crem_Contig0  C 0 T 2524
s caeSp111.Scaffold629   575428 2 - 33334924 -at
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736848 2 +  4147112 -AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=90.000000
s ce10.chrX             3303524 1 + 17718866 A
s cb4.chrX              8389437 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459984 1 -  4500979 a
i caeRem4.Crem_Contig0  T 2524 C 0
s caeSp111.Scaffold629   575430 1 - 33334924 c
i caeSp111.Scaffold629  C 0 T 2442
s caePb3.Scfld02_0      1736850 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=-8335.000000
s ce10.chrX             3303525 27 + 17718866 ---AT-AATGCTAGTTTGAACTGATTTGAAA
s cb4.chrX              8389438 31 + 21540570 TTAATGTGTGTTTCAAAACTTACAAAAGCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   459985 24 -  4500979 ataat-tttgctCAAGAATTAATG------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   572989 25 - 33334924 ---AT-TATGCTGAATAGAACTTGTTTAA--
i caeSp111.Scaffold629  T 2442 C 0
s caePb3.Scfld02_0      1736856 27 +  4147112 ---TT-CTTGTCGAAAACACAATATTCGAAT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=51908.000000
s ce10.chrX             3303552 83 + 17718866 TTTTCAGACACATGCCGGAAACACGTGGTCGGGCAGTATATGACATTATTGAGTCACTGGACAAAAACGTCGCTTCTAGGGTA
s cb4.chrX              8389469 83 + 21540570 ATTCTAGACATATGCCAGAAACAAGTGGACGAGCTGTGTATGACATTATTGATTCAATGGAGCAAGTTGTTTTCTCATGGGTg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   460009 83 -  4500979 ATTCTAGACATATGCCAGAAACTAAAGGACGTACAGTATGCGACATCATTGAGTCAATGGATGAGAATGTTATGTCTAGGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573014 78 - 33334924 -----AGGTACATGCCTGAAACGAAAGGACGAGCTGTATGTGATATCATTGAAGCTATGGATGAAGAAGTTGCGTCAAGAGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736883 82 +  4147112 -TTCCAGGCATCTGCCGGAAACCAAAGGTCGTGCGGTTTACGATattattgaaagttttgatagaGAAGTTGGCTCCAGGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509816 83 -   823664 TTTATAGGTATATGCCGGAGACTCGGGCTCGAGCGGTTTGTGATATTATTGAGGCTATGGATCAGGAAGTTGCATCCAGGGTA
i caeJap4.Scaffold18194 I 50 I 5

a score=-3260.000000
s ce10.chrX             3303635 102 + 17718866 ATAATACCTGACTCGTT------TTAATTAA-------------GAAA--------AACATACATTTTCAGGCCACATCAATCTTGGAAGAAAATACTCCTCTCATCAA----AAATCGGGT---AA------------ATCTTTTTC
s cb4.chrX              8389552 100 + 21540570 a-------------------atcgaaattca-------------gaaattattgTTAACTCAGTTTTCCAGAGTCAAACATTGGCTGACGAGAAAGTTCCGTTACTCAG----AGATCgggtaaaat------------gtttttctc
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   460092 106 -  4500979 AAAATTTCTGCTCAGTAAAgatagaaactca-------------aaaa-----------------tttcagaccgCTACACTTGTTGAAGAAAAGATTCCTCTAATTAAGTCTAGAGTGggttgaac------------acttttttc
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   573092  97 - 33334924 AGTTTCATCTATAACTGAAAccatgaattga-------------aaat-----------------tttcagagtttctCATTCATCGAGGAAAACATTCCTCTTATCAA----ATCTAGAGT---AA------------GTTTTTG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736965 102 +  4147112 ---------TATAAGTAAAGtt-tgaactcattttcaagaagataatt-----------------tttcagagtgcTTCAATTTATGACGAAAAATCTCCTTTGATTAG----AGATCGGGT---AT------------GAATTGAAC
i caePb3.Scfld02_0      C 0 T 2484
s caeJap4.Scaffold18194  509904 104 -   823664 ----------------agattttttaaatctttcttgtatag--aaaa-----------------tttcagactgcaTCAGTTCTCGAAGAGAAAATACCATTGATTAG----AGATAGGGT---AATATTTACATTCCATTTTTC--
i caeJap4.Scaffold18194 I 5 C 0

a score=2972.000000
s ce10.chrX             3303737 185 + 17718866 ------ATACTTATTCCTAACTTAAATATAA-TGGTTTCAGGCTAGAAC---CTTTGGCGCAAAACGAAATAGCATTTTGAACACGCCTCGTTCTCGGGTA-------ATATAATCATGACAGGAATATTATTCTGC----AAAACTTAATTT---------------TTTTCAGGCTGTGACATTCAACCACAAGTTCGATTCA---GAAAGTTAAATACTT---T
s cb4.chrX              8389653 172 + 21540570 -------------aTA-ATTATCTATCATGA--ACTTACAGGCAAGTACACTACTGGCGACCAAAAGGAATAGCATACTCAACACTTCTCGAGCACGGGTA------CAAGCAAA-------------------TTCTGATAATTCAAAGTTCATATCGG--------TTTTCAGTCTTCTACGTACGATCAAGAATTAATTCCACGGAacattgaaata------t
i cb4.chrX              I 1 I 1234
s caeRem4.Crem_Contig0   460199 162 -  4500979 -------------gcaCGTAATCTAATTTTA-----TTCAGGCTTGGAC---ATTGGCGGCAAAACGAAATAGTATACTTACTATTTCCAGATCCAGGGT--------AATTAAA------------CTTGTGTTTCACATGacttaaagttt---------------ttttcagacattgaCGTACGATcagaagtacattccc---aaaaatcaaata------t
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   573189 180 - 33334924 ------ATCatcaatcagttttttcatctAA--TTTTGCAGGCTGGAAC---ATTAGTGATGAAACATGTTGTTGTTCTAAATACCACGCGTTCTAGAGTA---------ataaa--------------tttgtttc----aaaacaaattttatattaa------ttttttcagacatcAACATACGACAAGAAGTATGTTCCA---AACAAGCAAATCTTTTGAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734583 182 +  4147112 ------gtgtttgacctctttttttacttgc-ttttttCAGGCAGGAAC---ATTGACTATGAAGCGAAACAGCATCTTGAACACTTCACGTTCTCGAGTA------AGCATAGA----AAACATCTTTTCAGTTCA----GAAAcacatttc---tgaa---------tttcagactTCAACCTACGATCAAAAGTAcatattg---aacaaaaacatc------t
i caePb3.Scfld02_0      T 2484 C 0
s caeJap4.Scaffold18194  510008 197 -   823664 AGAAtgctctttaaaaatttttctaaaattaaaCCTTCCAGGCTAGCAC---ATTTGCCACAAAGCGAAACAGCATTCTCAACACTTCACGCACACGAGTATGAACTTTTACAAA--------------GATCATTG----CACTCtaattttttatcatttttttttatttcaggcGCTCACATTTGACCACAACTTGATTCAG---GGCAAGTATAAT------T
i caeJap4.Scaffold18194 C 0 C 0

a score=-19255.000000
s ce10.chrX             3303922 85 + 17718866 CCTAGTTGATAAGAAGTTTTCGTGGTCTTGAATCAATGTACTTTTTGCATACAATG-------CTTT-----ATAAGGAGCCTTTGATTTGATAAAA
s caeRem4.Crem_Contig0   460361 28 -  4500979 ----attgATGGAG-----------------------------TAcgaatac--------------------agaaaa----------------aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573369 29 - 33334924 AATAATTTGTATTA-----------------------------TGTGTATGT--------------------ATAAAG-------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1734765 10 +  4147112 ACTAGTTTAT---------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  510205 74 -   823664 ----GCTGATTGTGCTTCTTTTTGATCACCCGTTTATCGCATTTTTGTACAAAATGAAAGAATCTTTGttcgataaaa-------------------
i caeJap4.Scaffold18194 C 0 T 3465
e cb4.chrX              8389825 1234 + 21540570 I

a score=-6428.000000
s ce10.chrX             3304007 72 + 17718866 GTTTTGATTAAAAAGTCAAGAACATTCCGGATTTAGGAATTATTCAGTTAAGTTATACATACACTTTACTAC
s caeRem4.Crem_Contig0   460389 54 -  4500979 gttaatgtAAATACCTCATGAGTACTC----CTTAATAGTGCTT--------------ATGAACTTTTGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573398 39 - 33334924 --CATTTTCAACCTTCCACAATCAA------ATTGAT-------------------------ACTTTACCCT
i caeSp111.Scaffold629  C 0 I 38
s caePb3.Scfld02_0      1734775 41 +  4147112 ---CTATTCAACCTtctggaaacaatt----tttaat------------------------gacttttttct
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194  510279 3465 -   823664 T
e cb4.chrX              8389825 1234 + 21540570 I

a score=-480.000000
s ce10.chrX             3304079 57 + 17718866 GTATAACTGACATATGAATTATAAATCTGTATTTATATTTAAAAAAAGGTAAATAAT
s caeRem4.Crem_Contig0   460443 51 -  4500979 ATAAACATGAAATGTA----atcaatttgttgtttttttcactgata--tgaatcat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1734819 34 +  4147112 ---aacttg------------------tatttttgtatataaaaaaa--taaataag
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194  510279 3465 -   823664 T
e cb4.chrX              8389825 1234 + 21540570 I
e caeSp111.Scaffold629   573437 38 - 33334924 I

a score=-25687.000000
s ce10.chrX             3304136 255 + 17718866 TGTTATGAACTGTTGCAAAACGGTAAAGCCCTTATAGAATAAAATAAAAATACCCACAAAACCTCAGAAGCAGCTGAACAGTTAAACAGTTGAAGATTTTTA------CAAAACTATTAAAAACGTGCTCCAAATCTTTGAATGCATGTT-CTTGACATGCCGATTGATTTCCATCTGCATTGATTACCACGGAAAATGACTGTTTTAGATAAAAACTTGAAGTTCAGTTCAATCAACTCCGCAACGTTGTGTGGAGTGATC
s caeRem4.Crem_Contig0   460494 117 -  4500979 -------tatttttgta------------tgCTA---CATCAAGTTCCGATAT-----------------------------------------GATGATTG------CAG------GAAACATGTAGGCT--GCCCTGGAAAAAGTGTT-CTTGATAAG-----------------AGAAT------CAAGAA------CTGTCCT-GATACCA-------GTTCAGTCT------------------------------C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573475  97 - 33334924 --------------------------------------------------TGC-----------------------------------------GATGATTA------CTG-----CAAAATAAGTG-Tct--ctctggaaaaaaaaactaggtGATAAG-----------------AATTTGCCTA-CATGAACAAC--CAGT--T-GATGTAG-------GTTCAGTTC------------------------------C
i caeSp111.Scaffold629  I 38 C 0
s caePb3.Scfld02_0      1734853 106 +  4147112 ----------ttttGTA------------CTTT----CAT-------CGCTTC-----------------------------------------GCTTATTATGTGGGCAG-----TCATGTatgta--------ctggaaaaaaacgcC-TTTGATAAG-----------------GAGTGGGTTA-CAAGAA---------------ATGCAGTT-----GTTCAGTTC------------------------------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510279 3465 -   823664 T
e cb4.chrX              8389825 1234 + 21540570 I

a score=-3930.000000
s ce10.chrX             3304391 26 + 17718866 ATTTTGTTTCCATGAAAATCGGCAAA
s caeRem4.Crem_Contig0   460611 19 -  4500979 AGTTTTTCCTG-------GTGTCACT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold629   573572 26 - 33334924 ATTTCCTATCAAAGGAAAAGAgcact
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1734959 23 +  4147112 ATTTTATGTTC---TGAAAGACTCca
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194  506814 26 -   823664 atttttcctcattaccaatttGCAAG
i caeJap4.Scaffold18194 T 3465 C 0
e cb4.chrX              8389825 1234 + 21540570 I

a score=82940.000000
s ce10.chrX             3304417 185 + 17718866 AATGAAGTTCTATGTTCCTAGCAATATATTATTAATGATTGTCTTATTCCTTCTTTTTGATGTTATCACGCAAATACAATTAATAACATTTTCTGTCCTATCCGAGATTATAACAGAGATGAATAACCACACTTTAAGTACTCACTTTGGAATTGTACCCACTGAGACCAAGT-----ATG--TAAATTTTT
s cb4.chrX              8391059 185 + 21540570 aatgaaattttctgttcCCAAAAATATTCTTCTCATGATAGCATGTTTCCTACTACTGGACACTCTGAATCAGGTACAAACGTTAATGTTTTCCACACTGGCTGAGGTTATCACTGAAATGAATAACCATACCTTAATGAACCATTTTGGATTAGAACCCACTGAAACCAGGT-----ATC--Tcgaatttc
i cb4.chrX              I 1234 C 0
s caeRem4.Crem_Contig0   460636 179 -  4500979 TACGATGTTTTCTATTCCTAGGAATATTATTTTCATGATATTATGTTTTCTACTCTTGGATACCATTAACCAAATGCAAGTTCTAATGTTTTCATCATTATCCGAAGTGATCACTGCAATGAATAATCACACTCTTGTCTCACATTTCGGTTTGGAACCTACCGGAACACGGt-----aat--ttg------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   573603 186 - 33334924 aatgaaattctccATCCCAAGGAATATTCTGTATATGCTTATTTTATTTGTGACTTTTGATACTATCAATCAGATACAGGTCCTGACTTTTTCTACACTTGCTGAAGTCATTACTGAAATGAATAACCATACGTTGACTAATCATTTTGGGCTCGAACCGACTAAAACAAGGTGAAGAATT------ACGTA
i caeSp111.Scaffold629  I 5 C 0
s caePb3.Scfld02_0      1734987 187 +  4147112 aatgaaattctccgTGCCCAGAAATATTCTCTATATGATAGTTGTTACTATGCTGTTGGATATTATCAATCAGATTCAAGTGCTGACGTTTTCCACGTTGGCTGAGGTAGTTGGAGAGATGAACAATCATACACTCGTTAACCATTTTGGATTGCAACCCACAAAAGCtaggt-----attttttgaatata
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194  506840 185 -   823664 TATGAAGTTTTCAATTCCACCTAATCTCGTCTATATGCTATTCTGTTTTTTACTAATGGATATTATTAATCAAATTCAAATTACAACATTTGCAACGCTAGCAGATACTATCAATGTTATGAATAATCACACACTGATTACTCATTTCGGAGTTGAACCAACTACTGCGAGgt-----gaa--taaaatttt
i caeJap4.Scaffold18194 C 0 I 138

a score=6115.000000
s ce10.chrX             3304602 79 + 17718866 TTTCAAAAATACTATCAACTT--TAAATAATTATAATGTTAGATTGTCATTTGTAAATTCGATAATTACAACAAGTAACCA
s cb4.chrX              8391244 75 + 21540570 atcaaaaaac-----taatttcatCAAGAAACTTAAT-TCAGACTAGCAATGATGAACTCAATTATGACAACTACCCATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   460815 76 -  4500979 --caaaaaactgCAGTAAAttcataattgaaa--att-tcagattggcTTTGATGAACTCAGTTATGACAACAACAACCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573789 70 - 33334924 G-TGTGATAC------AAAT---CAAATAAAGCCCCT-TAAGATTGGCAATGATGAATTCGATTCTTACTTCTTCGAACGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735174 71 +  4147112 gttgacagaa------aaat---taaagaattgTAAT-TTAGCATTTCGATGATGAATTCCATAATGACAACAACCAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507025 138 -   823664 I

a score=101972.000000
s ce10.chrX             3304681 386 + 17718866 AGTTGGAAATGCTCTTTCAATACTGTTACTGCTCCCGGTTGTTGATTACAAAGGCAGAAAGTTTGTGGCGGTTTATCTGAGGT-------T---TTTTTTTTAAATATGATTA--TCCAGTTAATTTGGGTATATTAGATTTGCACTGATTTTTTCCACTGGTATTTGTCATTTGCTAGCTGCACTGTTTCAAGCGTCTGAAGTATTCATTTTGGGCCAGTTTCTGCTTGGGGTACAAACTTCACTTCGTTTTTTTGCTACACAAATGTTCATTGTAGAGAGTTCTCCGGATAACTGTCGAGGTAATT-----TGGTTCCTCATGAAAT---TTGTATG-----TTT----GTTTAGGTTTTGCAAGCGCTTCACTTGCCTTTGCATTCGTCATTTCAAAATTAGTCATGTAAGT
s cb4.chrX              8391319 386 + 21540570 AATCGGAAATGCTCTATCGATAATATTCCTCTTGCCTGTTGCTGATTACAAAGGAAGAACATTTGCAGCTATTCATCTTCGGTAACAATGT---cttatttaaattttaaaaa--------------aagaaatttagatTCGGTATCACAATTGCTGTTGCAGTATGTCAATTGTTAGCAGCGTGGTTTCAAGCATCTGAAATTTACATTCTCGGACAATTCATTCTGGGATTTACCTTTTGTTTGCGAACATTTGGAacacaaatttttatattagAATGTGCACCGGACAACTGTAGAGgtaatttaaaaatgtgtATAATATATA---Cagcaaatttcgaat-----ttccggtTTCGCCAGCACTGCACTCAtattttctttcgtttttggaaaacttaTCATGT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   460891 391 -  4500979 AATAGGGAATGCGTTTTCAATTCTATTACTTTTACCAGTCTCTGATTTGAAGGGACGAAAATATGCTGCAGTATATTTACGGT---agttt---ctgatt---atttttgaag--tcaaagatcttcaaaagtttcaggTTTGGTATAACGTTTGCATCTGCGTTGTGTCAGTTGTTAGCAGCTTGGTTCGAAGCATCCGAACTATACATACTAGGCCAGTTAATACTGGGATCTCATTATTCCTTACGTACTTTTGTCACTCTAATCTTTGTATTAGAGTGCGTTCCAGACATGTTCCGAGGTAATCTCAGCTCggaaattttaaata---ttgaaac-----att-----tttaggTTTCGCGAGTACCatattcatgttttcattTGTATTCGCTAAAATGATCATGTAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   573859 377 - 33334924 GGTTGGAAATTTTCTCGCAATTCTTCTCTTGCTCCCAATAGCTGATTTCAAAGGAAGAAAATATGTGGCAGTTTATATCCGGT---AACTTAAAtcgattaattttttgaa---------------ccattCATTCAGATTCGCCATCACATTTGCGACTGCAATCTGTCACTTGCTCGCATCATTGTTCCAtgcatctgaaatttatttaatAGGTCAATTCATTCTCGGACTCCATTATAGCCTAAGAACATTTGTATCTCCTATTTTTATCCTGGAGTGTGCCCCAAACAACTGCAGAGGTGATT------CATTAATTATATCAAACTTATTAAA-----AGT-----TACAGGATTTGTGAGCACCGCggtaattttttcctttgtcTTTGCGAAATGGATTATGT----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735245 387 +  4147112 TGTCGGAAATGCTCTAGGTATTCTTTTCTTGGTTCCAATTGCAGATAACAGAGGTAGAAAATACGTTGCAGCCTATATCAGGT---GAACT---TCGAATTTCGTTTTGAATA--ACCAAAA--ATCCAAACATTCAGATTCGCAATTACTTTTGCAACCGCCATTTGTCAACTATTGGCAACATTATTCCAAGCTTCTGAAGTTTATCTACTCGGACAACTCATTCTTGGGTCTCATTATTGCTTGCGTACTTTTGTGTCAGCAATTTATATTCTTGAATGTGCTCCGGATAACTGTAGAGGTAACT--agaaaacaaatgataaaCATGCAATTAAG-----ATT-------CAGGATTTGCTAGTACtgtactcattttttcttttgtctttgCAAAATTGATTATGT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  507163 395 -   823664 GGTTGGAGTTTTTATTTCATTATTCTTTGTAATGCCATATGCTGAAACCAAAGGTCGGAAGTTTGCAGTTATTTACTTAAGGT-----------TTTGTGAAAAGTGTGAAAATATTTCATAATATAAATAAGTTCAGATTTGTTCTGACTTTGACCACATCAATTTGCCACTTAACTGCTGCTGTTTTCCAAGCCTCTGAACTTTTTATCATTGGTCAGATATTCTCAGGATTACAACTCCCACTTCGACTTTTTGTTACTCTGCTTTTTATCACAGAATGCGCTCCTGATAGGTACCGAGGTAG----GAGGCACGAAATGTAAATAACTGGAAAAA-----CGTCCAAGTACAGGTTTCGCCTCAACTGCTCTCGTCTTTTCCGACGTTATCGGGCAAACCATTATGTAAGC
i caeJap4.Scaffold18194 I 138 I 258

a score=4854.000000
s ce10.chrX             3305067 228 + 17718866 --GAGCTTCGCTAATCTGAAAATATTATCAGATTTGCATTTTAAATTTTGTAAAACCCTCAAAATACATGCTCAACACATAATTT---TAGGTTTTCTTCGTCTTCGCCAAGTCTATTGGGAACATCGGATTTG---TGGTTTATTTATCCAGTATTCGAAATGATAACGTAAGA--------GTGG------CATTTTTTCTTACA---ATCAATTAATCAATCTGTTAGCGCAACGATAATTTTCTGTTTG
s cb4.chrX              8391705 191 + 21540570 --GAGAT---------------------------------Tttatttctccaaaa-----aaaaaccgtaatcCTGAAATTAATT---TAGGTTCTCTACGTCGTCTCCAAGTCTTCTTGGAACTTCCAGTTTA---TGGTTCATTTTCCCTCTATTCGTCATGATAAGGTAAGATGTCAATCAGAAAGTGATAAACCTCTC--------GAAAATG--------TATCAGCTCGGTTGTTGTTTATATCTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   461282 184 -  4500979 GGGAAAT---------------------------------ggtcttttt----------------ttggaattgtaGACTTTTGT---TAGGTTTTCTGCTGCATCACCGAGTTTGCTAGGAACG---AGTTCACTTTGGttcatttttccaatcatTGTGATGATAAGGTAACATTTATATTGCAA------GAACTCCTT--------CAAGACGTACAAAATTATCAGTTCTGTTGCTGTTCTGTGCATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574236 182 - 33334924 --GAGAT-----------AAAACGCCA--AGA-----AGCCAGAGTTTATTC-------------------------CGTTTTCT---CAGGTTTTCGACATCTTCTCCAGACTTATTCGGAACG---ACTTCATTATGGTTTGTTTTCCCGGTATTTGCAATGATAAGGTTTGT----GATAGAGT------GATGCTTTT--------AAATACGACCATA--TATCAGTTCTGTTGGGATTCTTTGTTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735632 194 +  4147112 --GAGTT---------------------------------CTTATTTTATTCGAG-----AGAA---GGAA---TATCATTTAATTGACAGGTTTTCTGTCGCATCCCCAAATGTTCTTGGAACT---AGTTCTTTATGGttcattttcccattatttGCGATGATAAGGTAGGA----AGTGATAA------CATgcattcttgaaaaaaaaaaccaccaaagTTATCAGTTCTGTTGCTGTTCTGTGTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  507558 258 -   823664 I

a score=33837.000000
s ce10.chrX             3305295 138 + 17718866 ATGCTGCATTTACCCGAATCTCCAAAATGGCTCATTCAACAAGATAAACTGGATGAAGCAAAAATGTCTATTAAATTTTATCACGGAAAAAAGTGCACTATTGGTA--AGA---CTTTGAAATA---TCAAATTTTCCACAAACTC
s cb4.chrX              8391896 130 + 21540570 CTCCTTCGGTTTCCGGACTCACCAAAATGGCTTGTCCAACAAAAAAGAGTGGCAGAAGCTATAGATGCAATTCGGTTTTATCATGGGGCCGAGTCTAAAATTTGTA--AGGAC-CTTTATAAATATCAGAGAG-------------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   461466 138 -  4500979 CTCACTCGGTTTCCTGAATCTCCAAAATGGCTCATTCAGCAGAACAGAGTGATGGAAGCGAGAGATTCAGTTCGATTTTATCATGGCGCTGATTGTCATTTAAGTA--AGA---CTTTCAAAGT---AGAAAGTCACTacaatttc
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   574418 139 - 33334924 ACTGTCCGCCTTCCGGAATCTCCCAAATGGTTGATCCAACAAAATAGGATTAGAGAAGCAAAAGAATCGATTCAATTTTATCACGGAAAGGACTCAGAAACTAGTG--AGAAA-CTATATGAAC---CTGGTA-TGCAAAGTTTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1735826 129 +  4147112 ACCGTTCGACTTCCGGAATCTCCCAAATGGCTCGTGCAACAAAACAGAATTAGAGAAGCAAAGGAAGCAATCCAATTTTATCACGGGCAGAGCT--GCAATTTGCG-----------TATGGTT---CGGAAG-CGcaccatttga
i caePb3.Scfld02_0      C 0 T 2485
s caeJap4.Scaffold18194  507816 138 -   823664 ACAGCGCGATTGCCAGAGTCTCCAAAATGGCTTGTGAGGCAGAACAGAATGGAAGAAGCTGCAAGAGCAACGGAGTTTTATCACGGGCATGACTGTTCTATAGGTATAAGAacacatcgaaaat-----gaag-taCAGTAAAC--
i caeJap4.Scaffold18194 I 258 C 0

a score=0.000000
s ce10.chrX             3305433 4 + 17718866 GCTC
e caePb3.Scfld02_0      1735955 2485 +  4147112 T
e caeJap4.Scaffold18194  507954 0 -   823664 C
e cb4.chrX              8392026 9 + 21540570 I
e caeSp111.Scaffold629   574557 0 - 33334924 C
e caeRem4.Crem_Contig0   461604 10 -  4500979 I

a score=47977.000000
s ce10.chrX             3305437 107 + 17718866 AAGTTTTCAGATGAAATAGTAACTTCATTTA--TTAAAGAAAGAAACTTGACTAATAAAAATAAAATATCTTTAAAAGAAGTTTGGGATAACGAAACTCTTAGAGAAGT
s cb4.chrX              8392035 107 + 21540570 AACGTTTCAGATGAAACTGTCAATAATGTGA--TCAAAGAGAATAGTCTAACCAAAGAAAACAAGCTATCTTTGAAGCAAGTTTGGGAAAATGACACGTTAAGACAGGT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   461614 103 -  4500979 ----tttcagatgaagTTGTGACTTCAAtga--tcaaagaaaaaaacttgacacatgaaaataaactttcaTTGCGTCAAGTATGGGAAAATGACACATTGAGAGAGGT
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold629   574557 104 - 33334924 ---TTTACAGACGAAGTTGTTACAtctattt--tgaaagagaagaaccTGACACAAGACAATAAACTTAGTTTACGTCAAATCTGGAGTGATGATACATTGAGAGAGGt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1733470 107 +  4147112 AATATTTCAGATGGTGTT-TTAC-TCAACTTCATCAGAGAAAAGAACCTGACAGAAGAATCTCACATTTCATTGAGGGAAATCTGGGAAAATGATACATTGCGCGAGGt
i caePb3.Scfld02_0      T 2485 I 2521
s caeJap4.Scaffold18194  507954 104 -   823664 --AGTTTCAGAGGAAAAACTATCATCTTtta--tcaaagaaaaaaacttgaCTATTGAAGATAGAATATCTCTGCGACAAGTATTGGAAAATGACACATTAAGAGAGG-
i caeJap4.Scaffold18194 C 0 C 0

a score=-5569.000000
s ce10.chrX             3305544 24 + 17718866 AAGCTTCCG-----TAGTGTCAAAAGGTT--
s cb4.chrX              8392142 29 + 21540570 aacatcttgaaaaaatgtatcaaaaaact--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   461717 24 -  4500979 ATACTTGTG-----ATTTGGAAAAATACT--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   574661 18 - 33334924 ------ttc-----attagttgaaagTTA--
i caeSp111.Scaffold629  C 0 I 1
s caeJap4.Scaffold18194  508058 21 -   823664 -----TTTG-----CAATGTGAATaactaaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1733577 2521 +  4147112 I

a score=35877.000000
s ce10.chrX             3305568 131 + 17718866 -TTAAAGAAAT--------ATTTAGGGTTTGAAAATTGTATTTGCGGTGTTACTGTTTCTTGAATTCGACACGTCATACGTAACTTCAGTTTACACAATTGATTTTCATAAATCGGCAGGATTCACGGTTCAACAAGTAA
s cb4.chrX              8392172 131 + 21540570 -taaataAACA--------TTCTAGTCTTGCCTGATAATTCTAGCCAACATGATGTTCATGCAATTTGACACAAGTTATGTTCTATCCATTTACACTATCATGTTCCATAATCAAGCTGGATTCACAACTCAGATGGTGA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   461744 131 -  4500979 -tgaatcaaaa--------atttaggcATTCAAAATCCTGTTAGCAGTATTGTTTTTCCTTGAGTTCGACACTACGTATATACTTTCTATTTACACAATAACTTTCCATAATACAGCTGGATTCAGTACACAAATGGTTA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   574680 134 - 33334924 -TAAAACAAGT---AGTTGGTTCAGGCTTCTAAGATTTTGTTAGCGGTTATAATGTTCATGGAATTCGATACGGCTTTCATGCAATCAACATACACGATTCTACTTCACAAAACTGTTGGTTTCAGTGTTTCTGCGGT--
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1736098 131 +  4147112 -taaaaaaaat--------gtttaggcTTTGAAAATCCTGTTAGCCGTACTGATATTCCTTGAGTTTGATACGTCTTATGTGATATCAACTTACACATTGCTTCTGCACAAAACTGCAGGATTTAGTGTTATTGCggtaa
i caePb3.Scfld02_0      I 2521 C 0
s caeJap4.Scaffold18194  508079 140 -   823664 ttaaaattatCCCAAATTAATTCAGGCTCTAAAAGTACTTTTCTCAGTTTCACTTTTTCTCATATTTGACTCTGCATCAGTCCAGGGCACTTATACCGTACTACTTCACCAGCGCGCTGGTTTCACCGTCCAGGAAGTaa
i caeJap4.Scaffold18194 C 0 I 7

a score=274.000000
s ce10.chrX             3305699 2 + 17718866 GC
s cb4.chrX              8392303 2 + 21540570 GC
i cb4.chrX              C 0 I 1239
s caeRem4.Crem_Contig0   461875 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  508226 2 -   823664 at
i caeJap4.Scaffold18194 I 7 C 0
e caePb3.Scfld02_0      1736229 0 +  4147112 C
e caeSp111.Scaffold629   574814 0 - 33334924 C

a score=-6538.000000
s ce10.chrX             3305701 22 + 17718866 TTGCAAAT------TTTATAAAGATATG----------
s caeRem4.Crem_Contig0   461877 25 -  4500979 TTACAATCACTCGGCTTTTGGACAT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574814 18 - 33334924 ----GAtt------cattcaaagaaaaa----------
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0      1736229 18 +  4147112 ----gatt------tttttaataatgaa----------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194  508228 22 -   823664 ----------------tttaaaaatttgaggaaattga
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8392305 1239 + 21540570 I

a score=71523.000000
s ce10.chrX             3305723 215 + 17718866 TATTGTTTAA--CAGGCACTAAATATTAATTTAATCATCACAACTGTCCTATTCCCCACGAAATTCATTGG-TACATTTTTATTAGATGCACTTGGAAGAAGACCAGTTTTAGCTATTGCTGGTATCATACAGT----------------------------------------------------------TTTCCCG---------ATCTTGCCTTATATTA-TCTGTTGAAATTATAATTTACGCCTTTGGATCAAGTTGGTTGACAAGAATTATGTGTAAGT
s cb4.chrX              8393544 258 + 21540570 TATTCCTT----CAGGCAATGAACATCAATCTCATAATCACAATTGTACTGCTTCCAACGAAATTCGTTGGCACCATAC-TTCTTGATACGCTTGGAAGACGCCCAACATTCTTTATTGCTGGAATTATGCAGT--ATAAATATGGAAACCAGTTTAAGAA--TCAAA----TACAAAAT--------------TCCAGATacacaaaatcaattttgatctTT-GCAACAAGTATCATCATATTCATTTCTGGCTCTAGTTTGATTACTCAGATCATGTGTGAGC
i cb4.chrX              I 1239 C 0
s caeRem4.Crem_Contig0   461902 258 -  4500979 TGTAGTTT----CAGGCAATGAACATCAACCTGATTATCACAGCTGTTTCGcttcccaaaaatttcattgg-AACATACATTCTGGATGCTCTTGGAAGGAGACCAACTCTGTTCATTGGCGGTCTGATGCtgtaaataaataagaaa--------aagac--acaaattattgaaaaat------------gattcagaTATTCAAAATCTGTTTTACTTTTG-GCAACTGAAATCATCATTTATATTTCCGGTGCAAGTTTTTTGACGGAAAGTTTATGTGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   574840 258 - 33334924 tatattttgaTATAGGCAATGAATATAAATCTGATAATTACAACAGTACTCTTTCCAACAAAGTTTATTGG-AACGTTTCTTCTTGATGCTCTTGGAAGACGACCAACATTATATATTGCTGGTTTTATGCAGT---------AAGAACCcgtt---------tctagattttttctgat--------ttcattttcagaatatcaaaaTCTGCGTTGATGCTG-GCAACCGAATCAATTGTATACGTCTCAGGGCCAAGTATTCTCACAGAAATGATGTGTAAGT
i caeSp111.Scaffold629  I 8 C 0
s caePb3.Scfld02_0      1736258 259 +  4147112 tgaatttc----taggccatgaatATCAACCTTATTGTTACTATAGTCTTATTGCCAACAAAATGCATGGG-TACCTTTATACTTGATGCTTTTGGAAGAAGGCCAACGATGATGATTGCTGGAACAATGCAGT------TTGTAGAACACGGTAGAAAGCTATCAgaatattctgt---------------ttttcagtgtCACCAAGTCAATTTTAATGCTATTCGATCAAATT-ATCATTTACTTTTCTAGTTCCAGTTTACTCACTGAAATTATCTGTAAGT
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194  508250 260 -   823664 -cattttt----taggCAATGAACATTAATTTGATACTAACCGTTGCGtttttccccacaaagttCATTGG-GACATACATAATCGATGCTCTCGGAAGAAGGCCTGTCATGGCAATCGGTGGAATCATTATGT---GAGTTGAGGa----------------tctaaaaattgaaagagagtttgtggttttttttagaTACGCAAAGACTTGGTTGATGCTG-GCCACTCAAACAATAATTTACTTCTTTGGTTCAAGTGCTCTGACTAGAATAATGTGTAAGT
i caeJap4.Scaffold18194 C 0 I 1110

a score=29725.000000
s ce10.chrX             3305938 160 + 17718866 AGTGATGGAAATAGTGA--AATGTTGAA--ACATTGTTT------CAGTCGTTGTTGTTGAATCATTATCACCAATTGCTTCAGCAACAGGTGTAAACTCTATCAGATTGTTGCTCACAATGGAATTGTTTCCTTCGTCGGCGAGGACAGTTGTAGGACAAGTATGT---TTG
s cb4.chrX              8393802 165 + 21540570 TTTcggaaaattcatat--tttacaaaattctattttttcttttccagatcTTGGTGTTGAGTTTCTAGCGGTGCTGGTTCCAGCGACTGGAGTTAACTCTATCTTAGTACTTTTTGTATCAGAACTGTTCCCACCGTCTGCAAGAACGTCTGTCGGCCAGGTAAGC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462160 161 -  4500979 GACCTAAAAGAGAATTG--TTTG-agaatgaaagttttt------cagatgttgTGGTAGAATTACTGTCATCATTGGCTCCTGCAACTGGTATGAATTCCATTCGAATTTTGTTCGTATCTGAGTTGTTTCCACCTTCTGCCCGAACAGCGGTTGGGCAAGTGAGTGCG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575098 160 - 33334924 TG--CAAGAGTCAATAT--CTCATTTAGTAGTTTCCCTT------CAGACATTGTGGTTGAATCTCTTCTAGCATTAGTCCCAGCGACAGGAGCAAACTCTCTTCGGATACTCCTTGTCTCGGAACTATTTCCACCATCTGCAAGAACAGCTGTTGGACAAGTGAGG---TTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736517 160 +  4147112 T---CTTCATTGAATGTAATTTGTTGAGTTTACTTTGTT------TAGATGTTGTGGTTGAAAGTCTTGCTGCAATAGTTCCTGCAACAGGAGTTCATTCCATTAGAGTTCTCTTTGTATCGGAATTGTTTCCACCAGCCGCAAAAACTGCAGTTGGACAGGTGAGT---TA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508510 1110 -   823664 I

a score=-2046.000000
s ce10.chrX             3306098 36 + 17718866 ATAGTTACAGCCGGATTTCTGTCAATAGTACATCAA
s caeRem4.Crem_Contig0   462321  2 -  4500979 ---------------ct-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1736677 31 +  4147112 -----TTCAGCAGTACTTTTGGAAGTATTACATTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  508510 1110 -   823664 I
e cb4.chrX              8393967  0 + 21540570 C
e caeSp111.Scaffold629   575258  0 - 33334924 C

a score=470.000000
s ce10.chrX             3306134 14 + 17718866 AAATAGTTTTTAGT
s caeRem4.Crem_Contig0   462323 12 -  4500979 --ctaattttcagc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1736708  0 +  4147112 C
e caeJap4.Scaffold18194  508510 1110 -   823664 I
e cb4.chrX              8393967  0 + 21540570 C
e caeSp111.Scaffold629   575258  0 - 33334924 C

a score=-1247.000000
s ce10.chrX             3306148 70 + 17718866 CCTTTTGAGCAAGATCATAACAAAAAAAAAACAAAAAAAAACAACGGGATTCTACAGAGATAAATATTGA
s cb4.chrX              8393967 20 + 21540570 TCTTT-------------------Actaaaacgagaaaa-------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1736708  0 +  4147112 C
e caeJap4.Scaffold18194  508510 1110 -   823664 I
e caeSp111.Scaffold629   575258  0 - 33334924 C
e caeRem4.Crem_Contig0   462335  0 -  4500979 C

a score=-1725.000000
s ce10.chrX             3306218 31 + 17718866 AATTATCTTTCAAAACTTTGTGAGACTTGAT
s cb4.chrX              8393987 12 + 21540570 --------tt-----ttaaaacaga------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   575258 28 - 33334924 AATGAGGGTTCAAAGTTTAATCAGAATT---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1736708  0 +  4147112 C
e caeJap4.Scaffold18194  508510 1110 -   823664 I
e caeRem4.Crem_Contig0   462335  0 -  4500979 C

a score=-6115.000000
s ce10.chrX             3306249 44 + 17718866 ATCTATTGAGCAAAATGGTTCTATACCGCGCAATTGATAAATGA
s cb4.chrX              8393999  8 + 21540570 ------------------------------------aAGCATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462335 24 -  4500979 atgtCTTGAAC-----------------cccaa---ataaataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575286  2 - 33334924 ---------------------------------------CA---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1736708  0 +  4147112 C
e caeJap4.Scaffold18194  508510 1110 -   823664 I

a score=-1565.000000
s ce10.chrX             3306293 9 + 17718866 -TTATTTGAA
s cb4.chrX              8394007 8 + 21540570 -GTTCTCTA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462359 7 -  4500979 -attttc-a-
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  509620 9 -   823664 tttttttca-
i caeJap4.Scaffold18194 I 1110 C 0
e caePb3.Scfld02_0      1736708 0 +  4147112 C
e caeSp111.Scaffold629   575288 0 - 33334924 C

a score=70310.000000
s ce10.chrX             3306302 137 + 17718866 GGCAAAATTATTTGGATCAATGCTAATTGGTACCCCTATTGTTTCTTTATTTCCAATTATCAACTCATTGTTTCCTCCCATCTTTTTCGTACCATTTGTGATAACACAGCTGTTACTTGGAATCTATCTTTTTAGGT
s cb4.chrX              8394015 137 + 21540570 GGCTATGATGTTTGGTTCGATGCTGATCAACACGCCAATTGTCAGTGTGTTCCCAATAGTAAACTCAATTTTCCCGCCAATTTTCTTCGTACCATTTGTTATCACTCAggtgatttttggaatctacTTATACAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462366 137 -  4500979 ggcGATGATGTTCATTTCTATGGCAATTAATACTCCTATCACAACTTTCTTCCCAATTGTAAACTCAATATTCCCTCCGATCTTTTTTGTACCTTTTGTTATAACACCACTGATTCTGGGCACCTATTTATATAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575288 137 - 33334924 GGCAATGATGTTCTTCTCTCTTGGAATCAGCTCACCTATCATTTCGCTGTTTCCTATTATCAACTCTATATTCCCACCAATCTTCTATGTTCCGTTTGTTATTagtcaattgttttttgggatCTATTTATATCGgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736708 137 +  4147112 GGCGATGTTATTCACTTCAATGGCGATAGGCACACCAATTCTATCCATCTTTCCAATAATCAACTCAATTTTCCCTCCTGCTTTCTTCATACCATTTGCGATTTCCCAATTTGTTCTTGGAATTTATCTGTTTAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509629 137 -   823664 ggcaaTGATGTTAGGTTCAATTGGTCTCGCTTTTCCAATCAGTTCATCATTTCCAATAGTTTACTCGTTCTTCACACCGGGATTTTTTATGCCCCCTATAATCACCCAATTTCTGTTAGGAACGTACTTGTTCAGGT
i caeJap4.Scaffold18194 C 0 I 50

a score=-1955.000000
s ce10.chrX             3306439 6 + 17718866 TTGTGA
s cb4.chrX              8394152 6 + 21540570 AAGCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462503 6 -  4500979 ATGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575425 6 - 33334924 ataatc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736845 6 +  4147112 TTCAGA
i caePb3.Scfld02_0      C 0 I 24
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=608.000000
s ce10.chrX             3306445 19 + 17718866 --ATAATGCTAGTTTGAACTG
s cb4.chrX              8394158 21 + 21540570 CAGTATTCCTAACTTTAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462509 19 -  4500979 C--TATTTATAGTTTTAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575431 20 - 33334924 -atgattttcagtttaaagGA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1736851 24 +  4147112 I
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=-8333.000000
s ce10.chrX             3306464  8 + 17718866 -------------ATTCGAGA
s cb4.chrX              8394179 18 + 21540570 GTTCGAAATGGAAATTCC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462528 14 -  4500979 GCTCT-CATGTA---TTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575451  7 - 33334924 -------------ATTCTA-A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736875  7 +  4147112 -------------ATTCGA-A
i caePb3.Scfld02_0      I 24 C 0
e caeJap4.Scaffold18194  509766 50 -   823664 I

a score=56516.000000
s ce10.chrX             3306472 84 + 17718866 T--TTTCAGACACATGCCGGAAACACGTGGTCGGGCAGTATATGACATTATTGAGTCACTGGACAGAAACGTTGCTTCTAGGGTAA
s cb4.chrX              8394197 83 + 21540570 ---GTTCAGAAACATGCCTGAAACTCGTGGACGCGCAGTTTATGATATTATCGAATCCATGGACAATGAAGTTGGATCAAGGgtaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462542 83 -  4500979 ---TTTTAGACATATGCCAGAAACTCGAGGGCGCGCAGTTTATGACATCATTGAGTCTATGGATAGAGATGTTGGCTCAAGGGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575458 85 - 33334924 GAATTTTAGGCACATGCCAGAAACAAGAGGTCGCGCTGTATACGATATCATTGAGTCACTAGATAGAGACGTTGGTTTCAGGGTa-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736882 84 +  4147112 T--TTCCAGGCATCTGCCGGAAACCAAAGGTCGTGCGGTTTACGATattattgaaagttttgatagaGAAGTTGGCTCCAGGGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509816 84 -   823664 --TTTATAGGTATATGCCGGAGACTCGGGCTCGAGCGGTTTGTGATATTATTGAGGCTATGGATCAGGAAGTTGCATCCAGGGTAA
i caeJap4.Scaffold18194 I 50 I 54

a score=-1181.000000
s ce10.chrX             3306556 55 + 17718866 ---TGATACTGGTTCACTTTAATTTCTAAAAAAC------TATGTTTTAGGCTGCGTCAATAAA
s cb4.chrX              8394280 51 + 21540570 tt----------ttctttattttttctgacttATTGT---GAGTTTCCAGGCTGCATCCATACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462625 56 -  4500979 TTTCAATGATCATTCAGtagttttctaaaattat--------gttttcaggCTGCATCAATTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575543 54 - 33334924 ---aggaaaaaatt-------ctttccaGCTgacatttcgaattttataGGCTGCGTCGGTTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1736966 57 +  4147112 AT-AAGTAAAGtttgaactcattttcaagaagat------aatttttcagagtgcTTCAATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  509900 54 -   823664 I

a score=160674.000000
s ce10.chrX             3306611 480 + 17718866  
s cb4.chrX              8394331 532 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   462681 522 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   575597 497 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1737023 514 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  509954 589 -   823664  
i caeJap4.Scaffold18194 I 54 I 231

a score=2332.000000
s ce10.chrX             3307091 3 + 17718866 CGT
s cb4.chrX              8394863 3 + 21540570 CAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   463203 3 -  4500979 CAT
i caeRem4.Crem_Contig0  C 0 I 114
s caeSp111.Scaffold629   576094 3 - 33334924 Cat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1737537 3 +  4147112 CAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510543 231 -   823664 I

a score=998.000000
s ce10.chrX             3307094 9 + 17718866 GAACCTCAT
s cb4.chrX              8394866 9 + 21540570 TTATTTTAt
i cb4.chrX              C 0 I 182
s caeSp111.Scaffold629   576097 9 - 33334924 aaaatctat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1737540 9 +  4147112 ATACTCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510543 231 -   823664 I
e caeRem4.Crem_Contig0   463206 114 -  4500979 I

a score=975.000000
s ce10.chrX             3307103 6 + 17718866 CTTAAT
s caeSp111.Scaffold629   576106 6 - 33334924 ttttat
i caeSp111.Scaffold629  C 0 I 113
s caePb3.Scfld02_0      1737549 6 +  4147112 CTTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510543 231 -   823664 I
e cb4.chrX              8394875 182 + 21540570 I
e caeRem4.Crem_Contig0   463206 114 -  4500979 I

a score=151.000000
s ce10.chrX             3307109 3 + 17718866 ACT
s caePb3.Scfld02_0      1737555 3 +  4147112 ATT
i caePb3.Scfld02_0      C 0 I 646
e caeJap4.Scaffold18194  510543 231 -   823664 I
e cb4.chrX              8394875 182 + 21540570 I
e caeSp111.Scaffold629   576112 113 - 33334924 I
e caeRem4.Crem_Contig0   463206 114 -  4500979 I

a score=0.000000
s ce10.chrX             3307112 1076 + 17718866  
e caePb3.Scfld02_0      1737558  646 +  4147112 I
e caeJap4.Scaffold18194  510543  231 -   823664 I
e cb4.chrX              8394875  182 + 21540570 I
e caeSp111.Scaffold629   576112  113 - 33334924 I
e caeRem4.Crem_Contig0   463206  114 -  4500979 I

a score=301.000000
s ce10.chrX             3308188  90 + 17718866 AAATTTTA----TTGTGTTACTA----TCATTTTACACGTTTTTCCCCTC----TTTTTTATATTGGAACAGGCAATTGCCCTTT--------------------------TTCAAATATAAAGG--------TTC
s caeSp111.Scaffold629   576225 135 - 33334924 aaatttcagattttttgttccCAAAGCTCAGTTcagatgttttttcaatcaaacttttttttctttgagcGGATACTT-CCTTTTAATATCATACTCACATTTTGAACCGATCCgaatctaaaaaaagagCATTCC
i caeSp111.Scaffold629  I 113 C 0
e caePb3.Scfld02_0      1737558 646 +  4147112 I
e caeJap4.Scaffold18194  510543 231 -   823664 I
e cb4.chrX              8394875 182 + 21540570 I
e caeRem4.Crem_Contig0   463206 114 -  4500979 I

a score=-1948.000000
s ce10.chrX             3308278 5 + 17718866 CTCCC----
s caeRem4.Crem_Contig0   463320 5 -  4500979 ----CTACA
i caeRem4.Crem_Contig0  I 114 C 0
s caeSp111.Scaffold629   576360 5 - 33334924 --ATCGA--
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1737558 646 +  4147112 I
e caeJap4.Scaffold18194  510543 231 -   823664 I
e cb4.chrX              8394875 182 + 21540570 I

a score=1092.000000
s ce10.chrX             3308283 2 + 17718866 AA
s caeRem4.Crem_Contig0   463325 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576365 2 - 33334924 AA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1738204 2 +  4147112 AA
i caePb3.Scfld02_0      I 646 C 0
e caeJap4.Scaffold18194  510543 231 -   823664 I
e cb4.chrX              8394875 182 + 21540570 I

a score=17204.000000
s ce10.chrX             3308285 130 + 17718866 GAACACTTAAAAAAATGCCAGTTTTGGTTTTTTCCCCATTCCGTTCAAGA-------CGAGCAAACAATCTCTTTTCC----CT---TCGCTCCACAAATCCATCGTATTTTTTAATTTTCCCGTAGC--------ACAACAATT--CTTGCT----G
s cb4.chrX              8395057 142 + 21540570 GAACACTT-TACAAATGTCGGTtcca----tttttaagaaattttttctccgttttaaaaccaaaaaaattccatttg----cC---TCACACAA--AATCtatatattctttt--tttgctcgGGGGTGGCTTAAATAATAGTTGCAATGATGGTGG
i cb4.chrX              I 182 C 0
s caeRem4.Crem_Contig0   463327 119 -  4500979 GAACACTC-TACAAATGccagttcca---ttttttgagcCACATTCGCGCC------AAAGCAAACATGCCCTCTCAT----TG---CCACACCA-----------ATTCGTAT--TTTTTCCGGAGG--------GCAATAGTTGCAATGATGGT-G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576367 125 - 33334924 GAACACTT-TACAATTG-Tggttcca---tttttccagtttcattTGAGT-------AAAACAAATATGCCCTCTTTCATCGCCCCTCCCCACCA-------ATccgtattttt--tcttcccggAGG--------GCAATAGTTGCATTGGT----G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1738206 122 +  4147112 GAACACTT-TAAAATTG-cggttcca--tttttttcagtttcatttgaGA-------AAAGCAAACATGCCCTCTCAT-TCGCC---ACACAcca-------atctgatttttt--tctgctcgGAGG--------GCAATAGTTGCATTGGC----G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  510543 231 -   823664 I

a score=236536.000000
s ce10.chrX             3308415 318 + 17718866 AATTCAAA--TGTGTGTA----TGAAATCCAATA-------CATTTTTTCCA---TACGATGACCCATCCATTATGTTTCATTTCG-------------------------------CTCCAAAACTATGTGCGCCCGCACTATTTCCCGGAG-A-----AGAAGCCGAGAGACATA----------TACACAT----TGAGCGCGCCAG--------GGGCCTCCCATCA-TTTTATATCCAACGTCTCACAC-------TTGTTCCTTC-ATTGCC----GTATGTTTATCAAAAAAAAAAAGCGGCGTCGCC-GGGGGCTATCAATCTCAATTCATCTCTTTCATCACTAC--------AACATCCATTATTCTTCCACGTTT-----TCTAATTTTTACCGGCGCTGCGGAAATAT
s cb4.chrX              8395199 314 + 21540570 CATTCAAA----TGTGTA----TGAAATCCAATACG-----CATTTTTGC---------ATGACCCATCCATTATGTTTCATTTCGGCTGCCCTCCCATCTCCTCTCCCGACACATCCACCAAAACTATGTCCACCAAT-----TTCCCGGggaa-----aaaa---gagcaacaaG-------------------------------GG--------GGCCCTTCCATCACTTTTATATCCAACGTCTCACAC-------TTGTTCCTCC-ATTGCC----Gtatgtttatc-aaaaaaaaaagtggcgTCGCCCGAGGGCTATCAATCTCAATTCATCTCTTTCGTCACTAC---------ACATCCATTAttcttccacatttttttgtccaatttCTACT----------AGATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   463446 314 -  4500979 CATTCAAATGTGTGTGTA----TGAAatccaata-------cattttttcca---tACGATGACCCATCCATTATGTTTCATTTCG---------------------------CTCCCTCCAAAACTATGTACGTCCACAA---TTcccggag-a-----aaaa---gagaaacaca----------CACACAA----T--GTGCGCCAG--------GGGCCTCCCATCA-TTTTATATCCAACGTCTCACAC-------TTGTTCCTTC-ATCGCC----Gtatgtttatc-aaaaaaaaaagcggcGTCGCC--GGGGCTATCAATCTCAATTCATCTCTTTCATCACTAC--------AACATCCATTATTCTTCCACGTTT-----TCTAATTTCTAGTGCCTTTGTGGAGAGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576492 311 - 33334924 TATTCAAA--TGTGTGTA----TGAAATCcaata-------cattttttcca---taCGATGACCCATCCATTATGTTTCATTTCG---------------------------CATCCACCAAAACTATGTACGTCCACTA---ctctcgaag-a-----aaaa---gagaaacaca----------cacacacacaat--gTGCGCCAG--------GGGCCTCCCATCA-TTTTATATCCAACGTCTCACAC-------TTGTTCCTTC-ATCGCC----GTatgtttatc----aaaaaaagcgCCGTCGCC-GGGGGCTATCAATCTCAATTCATCTCTTTCATCACTAC--------AACATCCATTATTCTTCcacattt-----tctaatttcttgTGATGTTGTAGAGA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1738328 313 +  4147112 TATTCAAA--TGTGTGTA----TGAAAtccaata-------cattttttcca---taCGATGACCCATCCATTATGTTTCATTTCG---------------------------CTTCCTCCAAAACTATGTACGTCCACTA---CTctcgaag-a-----aaaa---gagaaataca----------CACACAT----T--GTGCGCCAG--------GGGCCTCCCATCA-TTTTATATCCAACGTCTCACAC-------TTGTTCCTTC-ATCGCC----Gtatgtttatc-aaaaaaaaaagcggcGTCGCC-GGGGGCTATCAATCTCAATTCATCTCTTTCATCACTAC--------AACATCCATTATTCTTCcacaatt-----tctaatttctactGCCGTTGTGAAGAGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  510774 364 -   823664 AATTCAAA--TGTGTGTATGTTTGAAATCCGAtatgctttcttttttttccgtactACGATGACCCATCCATTATGTTTCATTTCG----------------------CTGCTTTTCTACCAAAACTATGatggaatgaaa---------aag-aaaatgaaaa---gagaAGCACACACCCAGACTCACACAT----T--GAGCACCAGTAGGAGAAATGCCTCCTATCG-TTTTATATCCAGCGTCTCACACACACTTGTTGTTCCTTCTATTTTCTTCAGTAGGTTTATC-----AAAAAAGCAATGCAAGTGAGGAGCTATCAATCTCAATTCATCTCTCTCATCACTACATACAAACAACATCCATTACTCTTTCacattt-----ctaatttttttttgcccgcgGGCACAT--
i caeJap4.Scaffold18194 I 231 I 508

a score=180.000000
s ce10.chrX             3308733 1 + 17718866 T
s cb4.chrX              8395513 1 + 21540570 T
i cb4.chrX              C 0 I 152
s caeRem4.Crem_Contig0   463760 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1738641 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  511138 508 -   823664 I
e caeSp111.Scaffold629   576803 0 - 33334924 C

a score=-7976.000000
s ce10.chrX             3308734 67 + 17718866 TGATGGACTTTCTGATTGTGACAGCTAGCAAATGAGCCAGA---------GGAAATAGAACA------TCTGAAATATTTTC
s caeRem4.Crem_Contig0   463761 30 -  4500979 ---------------------------GGATGGAAGGAGCA--TGGGGTGACAACTTGA-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576803 74 - 33334924 --------GGTGCTTTCCTGATAAATGAGTTGAGAGTAgaagttgaaagaaaaaatgaaacatagAGGACAGAAGTTACTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1738642 76 +  4147112 AGATAAATGGTGCGTGTGTGATAAATTGGTTTTGAGAAGGAGCCGGAGCCAAAACCAAGACA------AATGgattggtttc
i caePb3.Scfld02_0      C 0 I 1035
e caeJap4.Scaffold18194  511138 508 -   823664 I
e cb4.chrX              8395514 152 + 21540570 I

a score=-5199.000000
s ce10.chrX             3308801 80 + 17718866 GAAACTGCCTAGTTTTTGCATGATCAAATATGGACTACGCTCGGTGGGGAAATGATTGAAAATCAATGCTAAAATTACCG
s caeRem4.Crem_Contig0   463791 34 -  4500979 ------------------------CAAATGAAAT-------------------GACCAGGACCAAtctgaaaagaca---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576877 70 - 33334924 ---ACTAATATGCGTTTCATTTTCCTAATGAGATTTAC---TGatgataaaa-aatcagagatTAGCAGAATATTCA---
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1738718 1035 +  4147112 I
e caeJap4.Scaffold18194  511138 508 -   823664 I
e cb4.chrX              8395514 152 + 21540570 I

a score=-39448.000000
s ce10.chrX             3308881 301 + 17718866 AAAATCATAATA--------AAATTAAAAGTGTT--------------TATTTTTTG--------ATTTGA--GTCAAAAAGCGGTTAAAAC-----TAAGTTTCCACCAATTTCCAGTTTTTTTGGAAGTCGTCGATATTTTTTAATTATGCTTAAAATATGCATATTTAAATTTTTTTTGGAAATGGCCAAGC-----------TCAGTTTTCACCACTTTTTGACACGGTATAGAGTCTTTTCTAAAAAATTTTGAAAAGC-------TTTGCTA------TAACGATTTGTCA-----TTTCGGCATCATATGCATAGATTTTACCGTTTTCCCATTGGCCGTGGTC----CACTTTCAAAAAATGT--
s cb4.chrX              8395666 344 + 21540570 AGGTTCTCATCA--------GAATGAAAATTACCTATTCAATGAGCTCTATTTTTGGTcggtaaaatttcaaattcctagAGCAATAGGAAcacttttagat-------attt-------ttttcGGACTCCAAAGTTCGCTTTTCATTTTAACTGGAAAAAGCAGAACAAGATATATTTTTGCAATA-CTataaattaatatttttcaaaattcaaa----cttgatCC--CATGTAGGCTGGCCctgaaaatgtcgaatttcGATGGTTTTTTCCACTACTGTAACTTTATTTCAAATtgcttcttgttttttacaaacgaaattccttttttcttcccatttGCAGTTCTACCGTattctccaaaaatat
i cb4.chrX              I 152 I 36
s caeRem4.Crem_Contig0   463825 170 -  4500979 aaaatttcaccaaactttttaaataaaaaataat---------aactcTACTTTTTTCCAGTGGAATTTTA--------------------------TAGAT--------------------------CCCCG---------------------------------------------CTTTGTAGCA------------------TCCATAttcaaa-----------------------------taataatttcagactCC-------TTGTCTTCTGTT-TAGCC-------------CTTCAtccctttt-------------ctattttcttcacCTCCACGTTT----CGTTTT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   576947 223 - 33334924 ------------ATGTTTGTAGATGTATAATGCA----TTatgaatgtttcttttttctaaaaacatttct----------gttAATTGAATAT---TACAT-------AATTGA-----CATTAGGAATCAA-----------------------------------CAATGAGTTCCTTTTGAATATCTAGGAATTTGC-----TCTCTTTTTATA-----------------GAATTTTGCTTCCAGGAATATTGGATTCC--------------------TAATCTGAGCTCAGAAA-CTTCCGATTTATTCCTG---------tttttttATCAACTTCTAAAATC----------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1738718 1035 +  4147112 I
e caeJap4.Scaffold18194  511138 508 -   823664 I

a score=-2307.000000
s ce10.chrX             3309182 32 + 17718866 GGAATAAGCTTTTAACATTCAACAAGAATTCC-
s caeRem4.Crem_Contig0   463995  4 -  4500979 -----------------------------TCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   577170 17 - 33334924 --AATATTCTCTT-------------GATTCC-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1738718 1035 +  4147112 I
e caeJap4.Scaffold18194  511138 508 -   823664 I
e cb4.chrX              8396010 36 + 21540570 I

a score=-2445.000000
s ce10.chrX             3309214 19 + 17718866 -----TTCCAAGGAATGCCACGAA-----------
s cb4.chrX              8396046 19 + 21540570 -----tttcgTGCA-----------TTGCCCCCAC
i cb4.chrX              I 36 C 0
s caeSp111.Scaffold629   577187 34 - 33334924 TTGCAGTTCGAGCACCTCCACGTTTTCGTTTCCA-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1738718 1035 +  4147112 I
e caeJap4.Scaffold18194  511138 508 -   823664 I
e caeRem4.Crem_Contig0   463999  0 -  4500979 C

a score=89470.000000
s ce10.chrX             3309233 403 + 17718866  
s cb4.chrX              8396065 436 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   463999 398 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   577221 432 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1739753 445 +  4147112  
i caePb3.Scfld02_0      I 1035 C 0
e caeJap4.Scaffold18194  511138 508 -   823664 I

a score=223602.000000
s ce10.chrX             3309636 472 + 17718866  
s cb4.chrX              8396501 484 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   464397 500 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   577653 487 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1740198 500 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  511646 515 -   823664  
i caeJap4.Scaffold18194 I 508 I 63

a score=10026.000000
s ce10.chrX             3310108 63 + 17718866 CGCAACTTA---TTTGACATCCA----------TACAGTAATAGAAAAGTG-TGTTATATTACTGTTCAAATATAAG
s cb4.chrX              8396985 64 + 21540570 CACATTTTAGTCGTTGTCGCTTA----------TTGT---CGCTTATTGTGAGGTTGTATTACTGTATAAACATGGG
i cb4.chrX              C 0 I 901
s caeRem4.Crem_Contig0   464897 52 -  4500979 CGCCTCTTA---TTTGTCACTTA----------TTGTACAAGTAAAAAGTG-GGTTCTATTACTGT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   578140 71 - 33334924 CGCCATTTA---TTTGCCACTTATTGTCATTTGTTGTATAATGAAAA---AGGGTTCTATTACTGTATAAATACAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1740698 64 +  4147112 CGCCTATTC---TTTGACACTTA----------TTgtataatgaaaaaagaaggttctATTACTGTATAAACATACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  512161 63 -   823664 I

a score=103.000000
s ce10.chrX             3310171 8 + 17718866 ACACATAG
s caeSp111.Scaffold629   578211 4 - 33334924 ----GAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1740762 4 +  4147112 ----GGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  512161 63 -   823664 I
e cb4.chrX              8397049 901 + 21540570 I
e caeRem4.Crem_Contig0   464949 0 -  4500979 C

a score=-90292.000000
s ce10.chrX             3310179 422 + 17718866 GTAACATAATTTTCTTTATCCACCACTCGCAGAACAAACGTATTTAATACGTATTTCTT-GAATTTTGACATACGTGTTACTAATTTTAATACAGAGTATTTTCTATATTACTATTGCATACAATAC---TATTCTTCTATTTGAGACTTTTAGATGCAACGTTACTACGATTGCAGGAGTGCTTAGAACTATACTTTAGAACTTAAGGT-----------AAAATGGAA------------------------CATTTTTCATTCCCCAATATAATAACTAATCATAAGT--TGTTGTAAGATTTATAGACTTTGGCAACTGAACATTAAAATTCCAATAAACGTATAGTCCAAATATTGCATT----------------TGCTGTCAGAATATTTCAATTG--CCATACTTATTTTT--AAAGAAGAGC-TAGAAATGCAATATCTTTTTAAGCTGC-------TCATTGTTTAAAATATAAACTAATG
s caeRem4.Crem_Contig0   464949 156 -  4500979 -----ATAAACAT---------------------------------ATATACTAAACTA-AGAGTATGA-------------AGTTTCA-----------------------------------------TATAACTCTATATAACGTGTAGAG------------------------AG------------CAAAGTAAATCcta-------------------------------------------------atttctt---------------------------------------------------------------catttgaagTCTATTtaataaacatt------------------------------------------------attt--tcactttttttatctTGATAA--------------------------------------------CCCGTATGATTTGAGTTACGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   578215 153 - 33334924 GT-GCGAAGTAAT---------------------------------ATACGC---CTTC-TTAGTGTGA-------------AGTTTCA------------------------------------------ATActtataaataatttttattg------------------------agtTCTTATCCTGCCTCACTGAAAACTA-------------------------------------------------ACGTTTC---------------------------------------------------------------CAATGATATTATGAAGATTCGATATT------------------------------------------------ATCA--TTAAACTTTTCTCC--GATA--------------------------------------------------AAAGTATGA-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1740766 156 +  4147112 AT-GTGAAATTTT---------------------------------ATACACTCATTTG-TAACTATGA-------------GG------------------------------------------------TATTTCTCACTTACTCTTCCTGCTAC--------------------AAAGTATATGAGGATATACTG-AACTTA-------------------------------------------------ATTTTTC---------------------------------------------------------------CTATAGGACTCTAA----CTTATAGT------------------------------------------------TTCAGCTCGCACACTTCATC--AATG---------------------------------------------TACTCAAAGTcaaa-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  512224 372 -   823664 ---atgaaattat-----tttttcactcgaaa--------------atgtacttttttgagaaattcgg-------------gGTGCCG--------------------------------TGATATGTACATAAAAGTGTgcaatgtacatacatac--------------------aggTGTAAGTAGTAAGAAGTAAGACGTAAGATGTAAGCAAAACAAAGTAGCAAACAGTTTACCGCCACTTATTTGCCACTTCTc-----------atatactgaataataggttctattacatactgtacatacata----------catatacataataatgtacaAGTATG--GAATAAAGAAATAAGAGACGAAATGAAATGAAGTGGAAATGT----ATGT--CCATATGTACATAT--AACAAACTGTAGAAAAGTAGAAAACCTATTCGAcacgcttcttcttcttcttccaactttccacccatt-
i caeJap4.Scaffold18194 I 63 C 0
e cb4.chrX              8397049 901 + 21540570 I

a score=21107.000000
s ce10.chrX             3310601 113 + 17718866 AATTTTCCTTTCTCAAA--------------TCTTTTCCGACAAGCCAACAAC-----------------ATATTC--------------CACCTTGAAGGTCATC----ATATC--CACACTTATCTCGAAAACATAACCAGG---CC-AACGTGCCTCGACACCAT
s cb4.chrX              8397950 110 + 21540570 --------------------------------------------------aacttttttttctaatt---ttgttcACAAGTTACGGATATTCATTGAAGGTCATCCCAGACATC--CACACTTATCTCGAAAACATAACCAGG---CCAAACTTGCCAAAACACCAT
i cb4.chrX              I 901 I 22
s caeRem4.Crem_Contig0   465105  72 -  4500979 ----------------------------------------------------------------------ATGTTC--------------TTTCTTGAAGGTCAACC---AAATC--CACACTTATCTCGAAAACATAACCAGG---CC-AACTTGCCAAAACAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   578368  75 - 33334924 ---------TTT------------------------------AAGT-TACGA------------------GTGTTC--------------TGTTTTGAAGGTCACT----AAATC--CACACTTATCTCGAAAACATAACCGGG---CC-AACTTGC-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1740922  85 +  4147112 ---------ttgtggaa-----------------------aaaagtACATGG------------------GTGTTC--------------TTTCTTGAAGGTCATC----AAATCCACACACTTATCTCGAAAACATAACCAGG---CC-AACTTGC-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  512596 138 -   823664 ttcttcaccttttcacattcGACACGCTTACTTTCTTCCACCAGACAAACGGAACGGCCTCATAATTCAAAAGTTA--------------CGTA-TGAAGGTCATCAC--ACATC--CACACTTATCTCGAAAACATAACCAGGACACC-AACTTGCC----------
i caeJap4.Scaffold18194 C 0 C 0

a score=-1126.000000
s ce10.chrX             3310714 33 + 17718866 CAACATACGCGTGGTA----------GACAAGACAAGGGGGGC
s caeRem4.Crem_Contig0   465177 12 -  4500979 --------ACGCGTTG----------AATG-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   578443 20 - 33334924 CAAAATACATGCGCTG----------AACG-------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1741007 20 +  4147112 CAAAACACATGCGTTG----------AACG-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  512734 24 -   823664 ----ACACATGCATTGTTTTCTGGGCAA---------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8398060 22 + 21540570 I

a score=162778.000000
s ce10.chrX             3310747 203 + 17718866 CAAGAAATCGGTGGGCCGAA--TCTATCGGCGTTCACGGTGTGGTGTGACTAATTGATGGTT------------------GTTAGTACG----GGAGTAG-TAGTACATGAGATGTCGACGGCGGATAACCAGACGAAGG------ACCTACTCGAGGTCGTGTCCGGTTGTTCACAGTCT---CTTTTCCTCACCT-------------TTCATCCCT-TTTCCAAT--TTAATGAGCCTTCTAATTATGTG
s cb4.chrX              8398082 225 + 21540570 CAAGAAATCGGTGGACCGAA--TCTATCGGCGTTCACGGTGTGGTGTGACTAATTGATGGTTGGCGTGGTGAAGAGGAAAGGTGGTAGTC---GTTGTAGTTAGTACATGAGATGTTGTCGGTGGATAACGAG----GAGTCCCTCTCCTACTCGAGGTCGTGTCCGGAG----ACAGTCTTTCTTTATTCTactcctttt--------------tcat-ttttcgtttcTAAATGAACCTCCTAATTATATG
i cb4.chrX              I 22 I 181
s caeRem4.Crem_Contig0   465189 208 -  4500979 CAAGAAATCGGTGGCCCGAA--TCTATCGGCGTTCACGGTGTGGTGTGACTAATTGATGGTT------------------GGTAGTAG-------TGTAG-TAGTACATGAGATGCTGTCGGTGGATAACGAG----AGG------GTCTACTCGAGGTCGTGTCCGGCTGTCCACAGTCTTTCTTTCTCCTTACCTTTTT-CATCA---CCCCctcct-ttttcatt--taaatAGACCTCCTAATTATATG
i caeRem4.Crem_Contig0  C 0 I 225
s caeSp111.Scaffold629   578463 215 - 33334924 CAAGAAATCGTTGGCCCGAA--TCTATCGGCGTTCACGGTGTGGTGTGACTAATTGATGGTT------------------GGTAAGAGTA---GTGGTGG-TAGTACATGAGATGTTGTCGGTGGATAACAAGAC--AGG------ACCCATTCGAGGTCGTGTCCGGCTGTCCAcagtctttctttttcctcaccttcttccatca---ttctcttct-tttttgtc--taaatGAACCTCCTAATTATATG
i caeSp111.Scaffold629  C 0 I 231
s caePb3.Scfld02_0      1741027 222 +  4147112 CAAGAAATCGGTGGCCCGAATCTCTATCGGCGTTCACGGTGTGGTGTGACTAATTGATGGTT------------------GGTAAGAGTAGTCGTCGTGG-TAGTACATGAGATGTTGTCGGTGGATAACGAG----AGG------ACCCACTCGAGGTCGTGTCCGGCTGTCCAcagtctttctttttcttcacctCCTTTCATCAGACTTCCCTCCCATTTTCGTC--TAAATGAACCTCCTAATTATGTG
i caePb3.Scfld02_0      C 0 I 289
s caeJap4.Scaffold18194  512758 196 -   823664 ----AAATCCGTGGCCCGAA--TCTGACGGCGTTCACGGTGTGGTGTGACTAATTGATGgtt------------------agta---------gtagtag-tagtacaTGAGATTTCGTCGGCGGATAACGAG----AGG------GCCTCGACGAGGTCGTGTCCGATCGTCCACAGTCTTTCTTCACCCATGTCGTCC----------GTCcccctt-tttctttt--caaatcgACACTCTAATTATGTG
i caeJap4.Scaffold18194 C 0 C 0

a score=480.000000
s ce10.chrX             3310950 37 + 17718866 -----CCATCAGACTCGGAGTATAATTATAACCTTTAAGACA
s caeJap4.Scaffold18194  512954 35 -   823664 GATACCTAT-------GGCACATAATTACAAGGTTTCCGACA
i caeJap4.Scaffold18194 C 0 I 199
e caePb3.Scfld02_0      1741249 289 +  4147112 I
e cb4.chrX              8398307 181 + 21540570 I
e caeSp111.Scaffold629   578678 231 - 33334924 I
e caeRem4.Crem_Contig0   465397 225 -  4500979 I

a score=0.000000
s ce10.chrX             3310987 792 + 17718866  
e caePb3.Scfld02_0      1741249 289 +  4147112 I
e caeJap4.Scaffold18194  512989 199 -   823664 I
e cb4.chrX              8398307 181 + 21540570 I
e caeSp111.Scaffold629   578678 231 - 33334924 I
e caeRem4.Crem_Contig0   465397 225 -  4500979 I

a score=160.000000
s ce10.chrX             3311779 3 + 17718866 GAA
s caeJap4.Scaffold18194  513188 3 -   823664 GGA
i caeJap4.Scaffold18194 I 199 C 0
e caePb3.Scfld02_0      1741249 289 +  4147112 I
e cb4.chrX              8398307 181 + 21540570 I
e caeSp111.Scaffold629   578678 231 - 33334924 I
e caeRem4.Crem_Contig0   465397 225 -  4500979 I

a score=546.000000
s ce10.chrX             3311782 2 + 17718866 AA
s cb4.chrX              8398488 2 + 21540570 AA
i cb4.chrX              I 181 C 0
s caeJap4.Scaffold18194  513191 2 -   823664 AA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1741249 289 +  4147112 I
e caeSp111.Scaffold629   578678 231 - 33334924 I
e caeRem4.Crem_Contig0   465397 225 -  4500979 I

a score=105476.000000
s ce10.chrX             3311784 341 + 17718866 GTAATAAAACTTGTCATTTCGCTGGCTGTTATGACAATG-CATGTTTGACTTTAGCC-A--AAAATTAATCAAC----------AAGCT---ACCTATGCCACCAA-----AAT--GT-----ATTGTCGGTG-TTTCTTTTTGCCGTTTGCGGTA------AACC-GAATAACATGCAT----GCAAATATTAG-TTTACCGTTG-GCGATGAAAGGTCGCAGAGCCCTAATTCGTACTGACAGCCGTGTGAGGCGAGTAGGGGACCCA-----------CTGATTTATTGCTCT-------CCGCCAAAAGTTTTATTACCT-----------CCTTTTCG----TCTTG-------------CC----------AAATTCCAC-TAAATTGCACTGGA---A--AACCCAGCGGCTCAAGAATCAGCTGCTCACCCTGGAGCT
s cb4.chrX              8398490 295 + 21540570 GCAATAAAAC---CCTTGTCATT--------TAACAATT-ATTCTTTTCTTTGAGCC-A--AAAACTAATCAAC---CGC---TCAGGT---A--TATGCCACCGA-----AAC--ATGTAACATTGTCGGTA-TCTCT--------TTTGCGGTA------AACGTGAGTTACATGCGTTTTGGCAAATATTAG-TTTACCGCTACGCGG------------GAGCCCTAATTCGTACTGAC------------------AGGGTCCCCCACCACCACTCTTGATTTATTGCCTTGCTTCTCTCGCCAAAACTTTTATGA-CT-----------TCCCCCAAAAACCCACA-------------CC----------AAAATCCACTTCCATCGGAATGAA---ATGAACCT----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   465622 317 -  4500979 GTAATAAAACTTGCCATTTCATTAGCTGTTATGACAATG-CATGTTTGactcaactc-a--aaaattaatcAGC---GG-----TAGCA---A--TATGCCACCAA-----AAC--AT-----ATTGGCGGTA-TTTCTTTTTGCCGTTTGCGGTA------AACG-GAATTACATACAT----GCAAATATTAGTTTTACCGTTG-GCGGCAAAAGGTCGCAGAGCCCTAATTTGTACTGACAGCCG----------GGAAGGGACCTC----------TCTGATTTATTGCCTT-------CCACCAAAACTTTTATTA-CC-----------CCTTTTCG----TCTTG-------------CC-----------AATTCCACTTCTATCGGAATGGA---A--AACCT--------GAGGCTCAGCTGCTCTCTT-------
i caeRem4.Crem_Contig0  I 225 C 0
s caeSp111.Scaffold629   578909 331 - 33334924 GTAATAAAACTTGccatttcatcagttgttATGACAATG-CATGGTTGACTCGACTCTA--AAAATTAATCAAC---AGC----TATGT---A--TATGCCACCAA-----AAC--AT-----TTTGTCGGTGTCGCTTTTTAGGCTTTTGCGGTA------AACC-GAATTACATGCAT----GCAAATATTAG-TTCACCGTTG-GCAAAGAAAGGTTACTAAACCCTAATTCGTGCTGACAGC---------------CAGTTCCCC----ACCA--TCTGATTTATTGCTTT-------CCGCCAAAACTTTTATTA-CC-----------CCTTTTCG----TCTTGTgctc---tt------------------ttccaattttatcGGAATGGAAGGA--ACCTT--------TGGGCTCAGCTGCTCTCTTTAGAGTT
i caeSp111.Scaffold629  I 231 C 0
s caePb3.Scfld02_0      1741538 330 +  4147112 GTAATAAAACTTGCCATTTCAACGGTTGTTATGACAATG-CATGTTTGACTAGACTC-A--AAAATTAATCAGCAGTAGC----AATGT---A--TATGCCACCCA-----AACATAT-----ATTGGCGGTA-CGCCTTTTTGTTATTTGCGGTA------AACC-GAATTACATGCAT----GCAAATATTAG-TTTACCGTTG-TCGTCGAAAGGTCGCTGAGCCCTAATTCGTACTGACAGC---------------CGGGTCCCA-----------CTGATTTATTGCTCT-------CCGCC--AACTTTTATTACCC-----------CCTTTTCG----TCTTGTGCTT---CTTTGCC-----------AATTCCACTTGCATCGGAATGGA---A--AACCT--------GAGTCTCAGCTGCTCTTCT--GGTCC
i caePb3.Scfld02_0      I 289 C 0
s caeJap4.Scaffold18194  513193 350 -   823664 GCAATAAAGGTTGACATTTTCATTGCCCC--TAACAATGTTATGTTTGGTTTTGCTT-GACAAAATTAATCAGT---GGCATATCAGGTCGGG--TCGGCTGGCAACTCACAAC--ATA----ACTTTTTGCG-GTTCCTTTGTATTATTGCGGTAAAAACCAATC-CAATTACATG-------GCAAATATTGA-CGTGTCGTCA------GAAAAGCC---GATACCTAATTGGTACTGACAGC---------------------CCG----------GCTGATTAATTGCTCT-------CCGCC-AAACTTTTATTG-CTTGCGTGCTCAAtctttttt----tcctgcttttagGTTTTCCCTGCTTTTAAGAAACTGAACTTGGA--AGAAAAGA---A--ATCCT----------GGCTCAGCTGCTGACTC--AAGCT
i caeJap4.Scaffold18194 C 0 I 29

a score=10436.000000
s ce10.chrX             3312125 65 + 17718866 CCTGGAGTATCTCAAGAGGTTGTGAGTCAAGCTTTTG--------CAATGGTCGCAAGCAGCCGC--------------------CAGTCCCT
s cb4.chrX              8398785 69 + 21540570 ----GG----TTGAGGACCCTGTGAGTCAAG----------------CAAGAAGCAGCCGCTCAAGAAACAGCACTCGCGAGAGATAGACAca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   465939 83 -  4500979 ---GGG----TTCGAGAGGTTGTGAGTCAAGCTTTTGCTCTAA--CTCTGGCCGCAAGCAGCCGCTATTCAGGACTCGAACCAG-CCGACACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579240 67 - 33334924 GGTGGG----TTCGAGAGGTAGTGAGTCAAGCTT---------CTCTCTGGCCACAAACAGCCGTCAGCTAG-------------CCgacaca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1741868 76 +  4147112 TGAGAG----TTCGAGAGGTTGTGAGTCAAGCTTTAGTTCTGATTCTCCGGCCGCAAACAGCCGCGAGCTGG-------------Ccgacaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  513543 29 -   823664 I

a score=68982.000000
s ce10.chrX             3312190 311 + 17718866 TTTTTTTC----GTT-----GTTCTGCCGTTTTAATTAATGATCTGATCG--G-GCGGGTGTTAAAGAACAG-AAGAACGGCTGATCGATTG-CTCACGGCGCAGGGCACAC-ACTTGAAGAGTATATTTTTTTCTTT----TTGTTCTAAGC-----------TTTTCTGCTGGAAATGA--AAGAAGATTGATGAGTCGAATAAACAAGC--------CATT---------------TCCCCCAGTTGTTGCAAGTATTCCTGTTTG---TTTTTCAACT----ACAAATTATAACCCATTATTACTGTGTACTTG-----AAA-----T----------------TGTTATCAAA-ACGCGGTGAAAGTAACAAAGGAAC---TGTTTGCA----------TTTGTAGAA
s cb4.chrX              8398854 313 + 21540570 gctttttt----ctttccaagtTCCGTCGTTTAAATTAATGATTTTATCG--GTTGGGGTGTTAAAGAAGAGCCCGAACGGCTGATCGATTGCTTCCCTAC------TAC---TCGTGTGgagt-tgttcttttttttcctcttgttCCATGC-----------TCTG------GAAGTGG--AGGAAGATTGATGAGTCAAATAAACAAAAAGCGGcgtagtgttttttttcttgctgttTCTGTTTCTTGGGAGATGTATCTGTTTGTGCTGCAACTACT----ATA-----------ATAATTG---CATTTCTATTTGAAAG----------------------CGCTATCAAA-AC-TTTC--------CCAAAGG--------TTACA-------ATGTTTACAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   466022 332 -  4500979 ATTTTTTC----CTC-----GTTCCGTCGTTTAAATTAATGATTTGATCG--G-CGGGGTGTTAAAGAACAG-AAGAACGGCTGATCGATTGGTTTTCTACGAAGAGCAC---ACTCGAGgagt-tgttctttt--------ttgttccatGC-----------TTTG---------CTGG--AAGAAGATTGATGAGTCAAATAAacaaga--------aatgttttttttctcccaattcTTGTGGTGTTGCAAAAGCTGTTGTTTG---TGTAACTACT----ACACATTATTACCCATTATTA---GATTTCTA--AGAAAGTGTTCTGTTCAAC---TTCCAATGCTATCAAA-AC-TTGCAAAAGTGACCAAATT--------TAACAAAGGCG-ATGTTTACAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579307 301 - 33334924 attttttcttctgtc-----gTTCCGTCGTTTAAATTAATGATTTGATCGGAG-AGAAGTGttaaagaacag-aaaaacgaCTGATCGATTG-TTTTCTACGTAAAGCAC---ACCCGAAGAGT-TGTTCTCtttgttccatt-------ttc-----------tttg---------ctGG--AAGAAGATTGATGGGTCGAATAAACAAgc--------c----tttttttgtt----ttcttctagtGTTGCAAGAGTTG-TGTTTG---TCCAACTAAATATTACACATTATTACCCATTATTcctgaatttctg-----aat-----tcaacaAC---TTCCAATGTTatcaaa-ac-ttccaaaagTAACCG------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1741944 328 +  4147112 atttttta----gtC-----GTTCCGCCAGTAAAATTAATGATTTGATCG--G-AGAAGTGTTAAAGAACAG--AAAACGGCTGATCGATTGCTTTTCTACGTGAAGCCCACAACTCGAAGAgt-tgttctttcttcttcctt-----catgC-----------TCTG---------CTGG--AAGAAGATTGATGAGCCAAATAAAcaagc--------cattttttctttgtt----ttctcgTAGTGTTGCAAGAATCGTTGTTTG---TTCTACTACA----ACCCATTATTACCCATTATTC---GGTTTTAA-----ACG-----TGTTCAAC---TCCCATTGCtatcaaa-actttccaaaagtAACCGAATGTC------TAACAATGGCG-CTGTTTGTAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  513572 316 -   823664 TTTTTTCT----CTC-----ATTCTGTCGTTTAAATTAATGATCTGATCG--G-CGGGGTGTTAAAGAACAG-GAGAACGGCTGATCGATTGCTTGTT---------------ACGCCGAaact-tcctctttttttt----ttcgtccattCAGTTGTTCGTTTCTGCTCACGGACACGGACACAAAGCTTCTGGAATTTA--AAACATGC--------tgccttttcttcttc----ttct--------------------tcttct---ttcatCCACT----ACG-GTCCCAAC--ATTATTC---TAATATGA-----AAG-----TGTTGAAAGTGTCAGAGTAATATCAAACACCCTTT-----TGACAGGAGAATTGGTGTGTCCAATTCCGCATTTTTACAA--
i caeJap4.Scaffold18194 I 29 I 127

a score=12266.000000
s ce10.chrX             3312501 51 + 17718866 CACGCCATAATTTC--------TTTCATAAACATTTGACCTCCATTAGTGTTACATAAC
s cb4.chrX              8399167 48 + 21540570 CACGCAACAAT---GAATG---TTCCATTA--GTTTGACCTCC---TGAATTGCATAAC
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   466354 56 -  4500979 CACGCAATATTTCCGAATAC-TTTTCATTA--GATCGACCTCCATTAGTATTGCGCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579608 31 - 33334924 --------------------------ATTA--GTTTGACCTCCATTAATGTTGCATAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742272 57 +  4147112 CACGCAATACATTTGTACAAGTTTCCATTA--GTTTGACCTCCATTATTGTTGCATAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  513888 127 -   823664 I

a score=-3024.000000
s ce10.chrX             3312552 37 + 17718866 TTTCC------------------------AGGAACCACGGCGTTACATTTTCATAT---AAAAG-----
s caeRem4.Crem_Contig0   466410 36 -  4500979 -----------------------------CTCTGGTATTGCGGTTCCCTTTTAAG----AAAAGATTTg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579639 51 - 33334924 -------------ACAACCTCCaatggaaaagtgaaatgtCGGTTccctttttattctgaaaag-----
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1742329 61 +  4147112 TTTTTGcgcaaaaagaaaagtgagggaaaaaataaaatagcgGTTCCTTTTCAAGT---AAAAG-----
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18194  513888 127 -   823664 I
e cb4.chrX              8399215 47 + 21540570 I

a score=-221.000000
s ce10.chrX             3312589 5 + 17718866 GAATA
s caeRem4.Crem_Contig0   466446 5 -  4500979 ctata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579703 3 - 33334924 --gaA
i caeSp111.Scaffold629  I 13 C 0
e caePb3.Scfld02_0      1742390 22 +  4147112 I
e caeJap4.Scaffold18194  513888 127 -   823664 I
e cb4.chrX              8399215 47 + 21540570 I

a score=1188.000000
s ce10.chrX             3312594 6 + 17718866 GAAAAA
s caeRem4.Crem_Contig0   466451 6 -  4500979 aaagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579706 6 - 33334924 TGGGAA
i caeSp111.Scaffold629  C 0 I 5
s caeJap4.Scaffold18194  514015 6 -   823664 aaaaaa
i caeJap4.Scaffold18194 I 127 C 0
e caePb3.Scfld02_0      1742390 22 +  4147112 I
e cb4.chrX              8399215 47 + 21540570 I

a score=-3271.000000
s ce10.chrX             3312600 10 + 17718866 ---------------------TAAAAGCCGA
s cb4.chrX              8399262  2 + 21540570 ---------------------------CA--
i cb4.chrX              I 47 C 0
s caeSp111.Scaffold629   579717 10 - 33334924 ---------------------TAAAAGCGAA
i caeSp111.Scaffold629  I 5 C 0
s caeJap4.Scaffold18194  514021 31 -   823664 tttcgtttttaatttttcttcaaaaaactaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1742390 22 +  4147112 I
e caeRem4.Crem_Contig0   466457  0 -  4500979 C

a score=86304.000000
s ce10.chrX             3312610 266 + 17718866 AAGCGTGAAAACAAAGAAAAGC-------------CTTTGAAGATT----TAA------------------AGTTCAAGGAATTCTG-------TCGGCGCTTTTTT-TTTGGTTGCCTGTTCCGGTAG-CCAT-GATCTCGTTC------CGTTTTTCACATTA-CACTACCTCAC--ACG-CACATTTATTTCTCGCCTTTTCACCT-----TTTTCACCTTCTCACCTACATTACG------TCTTTCTGTTTCACCACTTTTTGTGCGAATTCTCAAATAGTCT--------------CATAAAAGTG-----CGAAATCATTACCATGGTCATGCTCATTGCGTTC
s cb4.chrX              8399264 256 + 21540570 AAAGCTGAAGGTTATGCAAAATTCC----------TCCTGGAAGTTGTCCTAA------------------------AAACTACCTGCCCTCTCGCGGCGTTCTTTT-----------TGTTCCGGTAA-CCC----CCTCATTC------CGTTTTTCACATTACCCCCA--------CCACCAAATCCCATTCTCGCCTTTTTACCTCCACATTTTCACCTTCTCACCTAGAT------------------ATTTTCTATggtct-------ttttcaaattgtctcATCTATCTCCCTCCATAAATCTG-----CGAAATCATTA-CCTGGTCATGCTCATTGCGTTC
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   466457 243 -  4500979 --aaatgaaaacaaaggagaat-------------tcctggaagtt----caaggaggaaaaaag----taagggggaaaaTACCTG------CGCGGCGTTCTTTT-----------TGTTCCGGTAG-CCC---GTCTCGTTC------CGTTTTTCACATTACCACCG--------CCA-CACATCCCATTCTCGCCTTTTTACCC-----TTCTCACCTTCTCACCTAGATTCAG-----------AGAATTCACCA-------------CTTTCAAATTGTCT--------------CATAAAACTG-----CGAAATCATTA-CATGGTCATGCTCATTGCATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579727 223 - 33334924 ----------------GAGAAT-------------TTCTGGAAGTT----CAAGGTGGTCTTAAGAGGCAAAGCaaaaaaaCGACTG-----TGGCGGCGTTCTTTT-----------TGTTCCGGTAGCCCT---GTCTCGTTC------CGTTTTTCACATTACCACTGACACCCGACCA-CACATCCAATTCTCGCC--------------TTTTCACCCTCTCACCTagat----------------------tcgt-------------ttttcaaattgtct--------------CATAAAACTG-----CGAAAGCATTA-CATGGTCATGCTCATTGCATTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742412 233 +  4147112 -AAgtataaaaacaaagaaaat-------------tccTGGAAGTT----CAAGGTGTTgttgag-----gaagaaaaaaaagcctg---CTTGGCGGCGTTCTTTT-----------TGTTCCGGTAG-CAT---GTCTCGTTC------CGTTTTTCACATTACCACCGACACCAG-CCA-CACATCCAATTCTCGCC--------------TTTTCACCTTTTCACCTagat----------------------tcca-------------atttcaaatagTCT--------------CATAAAACTG-----CGAAATCATTA-CATGGTCATGCTCATTGCATTC
i caePb3.Scfld02_0      I 22 I 6
s caeJap4.Scaffold18194  514052 274 -   823664 ------aaacttcaaaGCTCATTCCGTCTTCCACGCCTTGCAAGTT----CAA---------GGGTGGCCGAATCAAAACATACCTG----CCTGCGGTGTTCCTTTGTTTCGTTC--CGTTCCGGTAG-CGCGAGACCTCACGCATGCGTCGTTTTC--TGTTAC--CTG--------CCG-C-CACCCTATTCTCGCC--------------TTTTCACCTTTTCACCTACATTCgtcggtgtttttttttcttcccta-------------GTTTGAAATTGTCTCATCT---------CGTAAAAGCGCGAAACGAAATCATTA-GATGGTCATGCTCATTGCCTTT
i caeJap4.Scaffold18194 C 0 C 0

a score=-12611.000000
s ce10.chrX             3312876 31 + 17718866 TTCG-----TTCGAGACGC--GCATTCAACGTGGCCAC
s caeRem4.Crem_Contig0   466700 19 -  4500979 ---GGGAGGTTAG----------AATGAAGGG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579950 17 - 33334924 ---------TTCGGGA-------AAAGAAGGGG-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742651  9 +  4147112 ---------TTCG---------------ACGAC-----
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194  514326 22 -   823664 CTCT-----CCCGGGACACTGGTAGCC-----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8399520 14 + 21540570 I

a score=109269.000000
s ce10.chrX             3312907 158 + 17718866 TCTTTGTCTCTAAT----TACACACAGCCTTCCTGGAAGGTCG-TTTTTAAAT-GAACGTACTTCTAGCGTGATATGTTATTCGGTTAGTGTCTGTTCAG-TTTCGTATGT--------TCGCAA-T---TTCAATGGTCTTTAACGGTCGATTTGTCAGAATTTCCGGCGGGTGGT
s cb4.chrX              8399534 139 + 21540570 TCTTTGTTTCTAAT----TACA------CTTCCTGAAGGAcggatttttgaatggaaCGTACTTCTAGCGTGATATTT------------------------TTCGTATGTACACCCCATC-CGATT---TTCAATGGTCTTTAACGGTCGATTTGTCAGAATTTCCGTCTTTTCGG
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   466719 144 -  4500979 TCTTTGTCTCTAAT----TACACAC--GCTTCCTGGAAGGtcg-tttttgaataaaacgtACTTCTAGCGTGATATGTTGTT------------ATTGGG-GTTCGTATGT--------TC-CGA-T---TTCAATGGTCTTTAACGGTCGATTTGTCAGAATTTCCGGCGGGTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   579967 150 - 33334924 CCTTTGTCTCTAATTACATACGTTC--CCTTCCTGGAAggtca-tttttgaatgaaaagtaCTTCTAGCGTGATATGTTGTTCG----------ATTCAG-TTTCGTATGT--------TC-CGA-T---TTCAATGGTCTTTAACGGTCGATTTGTCAGAATTTCCGGCGGGTGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742660 147 +  4147112 TCTTTGTCTCTAAT----TACGTTC--GCTTCCTGGAAGGTCG-TTTTTGAATAGAACGTACTTCTAGCGTGATATGTTGTTTC----------GTTCAGTTTTCGTATGT--------TC-CGA-T---TTCAATGGTCTTTAACGGTCGATTTGTCAGAATTTCCGGCGGGTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  514348 135 -   823664 TCTTTGTCTCTAAT----TACA-----CTTTCCTGGGAGGTCG-TTTTTGAATGGAAAGCAGTTCTAGCGTGATATTCT----------------------TTCCTTATGT--------TG-TTA-TGTGGTCAATTGTCTTTAGCGGTTAACTCGGCTGAACTTCCGGTAgctgat
i caeJap4.Scaffold18194 C 0 I 56

a score=14138.000000
s ce10.chrX             3313065 130 + 17718866 ACGAGTCAACAG---TGGTGATTGACTGCTACTGCAAGGAATTGAACAGAGAGTCGAACGAAAACTTTG-ATCAATTTTTTTTGTCTGCCCTGTTTGTGAAATCAGAAAATCATTAAATCTAACAATGACTCAT
s cb4.chrX              8399673  98 + 21540570 TTGTGTTGAGTG---TGgggat--------------------tgaag---------aaaaaaaaagttgaatgaaccctcttcttctctcctgtt----gaatcagaaaatcatCAAACTCCATGGTGAGTCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   466863 113 -  4500979 ACGAGTCAACAG---TGGTGACTGC-TGG-------------TGAAgagagattgaaaaaagaaagttgaatgaacttttctctttctttctgtc----gaatcaaaaaatcattaaactCCATGGTGAGTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   580117  53 - 33334924 ACGAGTCAACAG---TGGTGACTGC-TGC------------TTGTGGAAtagattgaagaaa-------------------------------------aaatcaa----------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742807 122 +  4147112 ACGAGTCAACAGTGATGGTGACTGCTTGG------------TTGTAGgataaattgagaaaaagtgttgaatGAACTTTCCtctctgtttctttctttcaaatcaaaaaatcattaaacTCTATGGTGAGTCAT
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold18194  514483  56 -   823664 I

a score=-3567.000000
s ce10.chrX             3313195  9 + 17718866 ------------GTAAAATGA-
s cb4.chrX              8399771 22 + 21540570 GAACTCTACGATATTGTACAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   466976  9 -  4500979 G-------------TTAACAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   580170  9 - 33334924 ------------gttgaATGA-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1742929 26 +  4147112 I
e caeJap4.Scaffold18194  514483 56 -   823664 I

a score=1011.000000
s ce10.chrX             3313204 6 + 17718866 GCATTT
s cb4.chrX              8399793 6 + 21540570 GATTTG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   466985 6 -  4500979 GTTTTT
i caeRem4.Crem_Contig0  C 0 I 119
s caeSp111.Scaffold629   580179 6 - 33334924 actttc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742955 6 +  4147112 ACGTTT
i caePb3.Scfld02_0      I 26 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I

a score=-10112.000000
s ce10.chrX             3313210 82 + 17718866 TCACAAAAAAAGTGCACTATTAGAAAACTGATATAACTTTTTTTTAAAGTTTAGATAGATTGGAGAAACTGTATATTTTTTA
s cb4.chrX              8399801 66 + 21540570 TTCTGATAAGATTTCACAACcagcaa--------agtttttttttcacgttttcct--------GAGAATGTAGAGTTTTTA
i cb4.chrX              I 2 I 16
s caeSp111.Scaffold629   580185  4 - 33334924 tcct------------------------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1742961 43 +  4147112 TCCtgagaaaatt--ataaataGGAA--------AGCT----------------------------GAATCTAAAGCGcga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-3061.000000
s ce10.chrX             3313292 53 + 17718866 GTTTTGTTAGTTAGGAAATGTTTTCTCACAATTTT------CATTATTGATTTAGTTGT
s caeSp111.Scaffold629   580189 22 - 33334924 -------------------------------cctt------ctttctttctttcgaatc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743004 46 +  4147112 gttttat-------------ttttccatgCACTTTAGTGAGTTTTCCATGTACCGTGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I
e cb4.chrX              8399867 16 + 21540570 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-7812.000000
s ce10.chrX             3313345 60 + 17718866 AAA---------AAAAATTTAAAAT--GCCGGAAAAGTGTCACCG-------------GAGAAAAATACTGAAAAAAGTCATAG---
s cb4.chrX              8399883 74 + 21540570 aaa---------aagagcaggAAATCAGTC-GGAAACTGTTATTGCCTCTTTAACCGGATAAAAAGTACAACTATAGGTTATGG---
i cb4.chrX              I 16 C 0
s caeSp111.Scaffold629   580211 35 - 33334924 -aa---------aaaatcattaaac-------------TTCATGG-----------------------------TGAGTCATGAGAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743050 47 +  4147112 -AATATAggttcaaaattctgaaac------gaaaattttta---------------------------------aaatcaacaCAG
i caePb3.Scfld02_0      C 0 I 227
e caeJap4.Scaffold18194  514483 56 -   823664 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-12302.000000
s ce10.chrX             3313405 220 + 17718866 TAAGAAGTTTCTTAAAAAATTGTTATTTTGTTTGA--AAAAAGTGATAATTGTTTAGTTTTGGTCATTTTTTATGAACGCCGTGAATCAAAAAAAATGTTGTTTTTCGAATTTTTAAGTGTACTTACATTATAAT--------------------GAATTTAATTTTTT-TG---TTG----AAACTTCAGTACTGTATTTTTTTAA-------AGAGGCaaaactcaataattgccac-------------------tttttg--actgtcattaaa
s cb4.chrX              8399957 222 + 21540570 --------------------AGCTTTTTTA-------GTACCACAATGATTGctt-------tttatttct---------------------aaaaaatttttttccattcttgGAGCTATAGTTGTacgaaattccgattttcagcccaGAACGACAGATAATGTTTC-tgactttgagaaaaatttgaacgaCATTTACTGTGGACACTCCTATAGAAGACAATCACTActcgcactttgagctcaattaactcaatttctgtaagagatatcaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   580246 124 - 33334924 CAAGAAGTT----------GTATTTTCTTGTATGTACGTACCgcaataatt---------------------------------------------cattttttcccgcTC----------AAATATGAAAgatt--------------------aaaaataagattttatGA--TTgagcaaaa-----------------------------acaaaaaagaat--------------------------------tttccg--ACTGGTAT----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1743097 227 +  4147112 I
e caeJap4.Scaffold18194  514483  56 -   823664 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-9760.000000
s ce10.chrX             3313625 50 + 17718866 --------------------------aatgtttaaaaattgctttgaaaagttttattatgga-----atttggtaatttt---
s cb4.chrX              8400179 73 + 21540570 aatttgtgaactgataaaaagtttgtaatattatca---------ccaatattttatcaggcgataggtttttgatattttt--
i cb4.chrX              C 0 I 80
s caeSp111.Scaffold629   580370 18 - 33334924 -------------------------------------------------AA-----------------CCTTTAGAATTTTGAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743324 35 +  4147112 --------------------------GATGCTTACA---------GCAAAATCC--------------CTTTTCAAACCTTGAA
i caePb3.Scfld02_0      I 227 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-2296.000000
s ce10.chrX             3313675 56 + 17718866 ggcacTATCTTCGGATAAAATATTTGATTTTAGAATTTAGAAATTCTAGACC-----TCTT
s caeSp111.Scaffold629   580388 31 - 33334924 GAC----TCCCACAATA--------------------------TTCTGAACACACTTTCTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743359 40 +  4147112 GGCA-TACCTCCAGATAGATTGT--------------------TCCTGACCccaatttttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I
e cb4.chrX              8400252 80 + 21540570 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=-7738.000000
s ce10.chrX             3313731 62 + 17718866 TTTCAAATTTA-CGATTCCTATTTAAAAATGACTTCCTAAGAATCTTGTTCCCACTAGGG----ATC
s cb4.chrX              8400332 59 + 21540570 tttcaagttttcggaatattcttTGTTCAGACCCTCTTAAAACC-----ACcaaataattg---ttt
i cb4.chrX              I 80 C 0
s caeSp111.Scaffold629   580419 46 - 33334924 TTTCGGATTTA-----------Ttgtgaaag-----tgaaaaaa-----gccTGATAACATATCCCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743399 20 +  4147112 actcaaactca---------------------------aagaaa--------------------ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  514483 56 -   823664 I
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=3453.000000
s ce10.chrX             3313793 6 + 17718866 TTATAT
s cb4.chrX              8400391 6 + 21540570 ttgttt
i cb4.chrX              C 0 I 16
s caeSp111.Scaffold629   580465 6 - 33334924 Ttatat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1743419 6 +  4147112 ttattt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  514539 6 -   823664 TTGTAT
i caeJap4.Scaffold18194 I 56 C 0
e caeRem4.Crem_Contig0   466991 119 -  4500979 I

a score=80139.000000
s ce10.chrX             3313799 394 + 17718866  
s cb4.chrX              8400413 440 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   467110 381 -  4500979  
i caeRem4.Crem_Contig0  I 119 C 0
s caeSp111.Scaffold629   580471 403 - 33334924  
i caeSp111.Scaffold629  C 0 I 40
s caePb3.Scfld02_0      1743425 395 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  514545 317 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-6358.000000
s ce10.chrX             3314193 43 + 17718866 AACC----ATAGCTTTGTACAGTT--TGAGTGAGTTCAATGCTTCTGAA
s cb4.chrX              8400853 35 + 21540570 --------ACCACTCCATACAATTCCTTTA------CAGTGttttttgc
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   467491 33 -  4500979 --------ACCGATCTAACCAATT--TATA------CTGTTTCTTTTGT
i caeRem4.Crem_Contig0  C 0 I 15
s caePb3.Scfld02_0      1743820 39 +  4147112 TATATGTCTCTGATCCATACGGTT--TTAG------TAGCATTCTT--C
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194  514862 37 -   823664 ------------ATCCATTCCGTTCTTTTGGGGCTTCTACATATTTGCA
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   580874 40 - 33334924 I

a score=194407.000000
s ce10.chrX             3314236 365 + 17718866 TCGTCTTCTTTCG-----------AACTTTTTT-------CTC------------------CAGCTTCTTGATGGGTTAATGTG--CAATGCAATGA-------AGCACATGTACATAGTACTCTCTTTCTTCCACACATATGGTTTACGTTTCCTATGTGTCCCTCTCCTTGATGCAATCTCTTAGCAGCCT-TCACTCTATACATGATTTTTAAT------------ATA------TATCTTTC-----TTACA-AAACTTGTTTCTTT-TCTTCTC---------CCAATTTTTTTCCATTT-----TCTTT----------------------------GCTCTGAGTCACGGTGTTACTAGAGAAGTCATCTGCCAAAAA---CTCATATTGCGGTTGGTCCTCACACCTATTCTCT------ACCTATTCATC-----GTAGAAGCCCAATTGGTTTTCTCATTACTTCACACCCTCA------TCTACCGC
s cb4.chrX              8400902 345 + 21540570 ----ttttcttcc-----------cattcgtct-------ttttcatttct-----ctcgggggattcttGATGGGTTAATGTGCACAATGAA---AATGAATCAGCACATGTACATAGTATT--------CTTTTACATATGGTTCACGTTG----CGTGTC-----TTCCGAACCAATCGCTTAGCCGTCT---------TACATGAtttttaatatgtttatacacata------tatctt-------ttaca-aaactttcttttttgttgtccc---------tccttttttctctgagTACTACTAC---------------------------------GTGAGTCACAG-------ATAGAAGTCATCTGCCAAAAAACTCATATATTGTGGTTGGCCCC--------TCTTCT------ACCTATTCATC-----GTAGAAGCCCAATTGGTTTTCTCATTACTTCACACACTC---------------
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   467539 354 -  4500979 ----TCGTATACC-----------CATTATTTTGCTCTGcctcccattttttcaagctCATCGGATTTTTGATGGGTTAATGTg--caatgaaatgaatgagCAAGCACATGTACATAGTA----------CTCTTACATATGGTTCACGTTTCCTCCGTGTC-----TTACGATGCGATCTCTTAGCAGTCCTTCACTCTATACATGAtttttaat------------ata------tatctt-------ttaca-aaacttgtttcttt-tctttcc---------acttcttttctttGAGT-----TAC----------------------------------TGAGTCACAG-------ATAGAAGTCATCTGCCAAAAA---CTCATATTGTGGTTGGCGCT--------CTTTCT------ACCTATTCATC-----TTAGAAGCCCAATTGGTTTTCTCATTACTTCACACACTCA------TCTAC--C
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   580914 363 - 33334924 tcgttttctttcgtaATTCCTcaaaatttgtgt-------ttt----ttgttcaagcTCTTCGGAATCTTGATGGGTTAATGTg--caatgaaatgaatgagcAAGCACATGTACATAGTATT------CCTCCATACATATGTTTCACGTTTCCTCTCTGTC-----TCCTAGTGCAATCTTTTAGTAGCAT-TCTCTCTATACATGATTTTTAAT------------atatctctttctctt-------ttaca-ATACTTGttccttt-ccttttc-------------------tttgaGG-----TTT---------------------------------CTGAGTCACAG-------ATAGAAGTCATCTGCCAAAAA---CTCATATTGTGGTTGG-GCC--------TCCTCT------ACCTATTCATC-----GTAGAAGCCCAATTGGTTTTCTCATTACTTCACACCCTCATCTACCTCTAC--C
i caeSp111.Scaffold629  I 40 C 0
s caePb3.Scfld02_0      1743862 355 +  4147112 TCGTTTCTCTccg-----------aatttgttt-------tttgttcttgttcaaGCTCTTCGGAATCTTGATGGGTTAATGTg--caatgaaatgaatgagcAAGCACATGTACATAGTATT------CCCTCATACATATGTTTCACGTTTCCTCTCTGTC----TTCCTAGTGCAATC-TTTAGTAGCTT-TCACTCTATACATGATTTTTAAT------------ATA------TATCTT-------TTACa-aaacttgtttcttt-tctttcc-----------ttcttttattcGTGG-----TCT---------------------------------CTGAGTCACAG-------ATAGAAGTCATCTGCCAAAAA---CTCATATTGTGGTTGG------------CCCTCT------ACCTATTCATC-----GTAGAAGCCCAATTGGTTTTCTCATTACTTCACACCCTCATCTACCTCTAC--C
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194  514899 409 -   823664 TGGTTTTTTCTTA-----------AAC-------------TTCCAGTCagccaaaacttttt---ttcgtaATGGGTTAATGTG--AAATGAGATGAATGAGCCAGCACATGTACATAGTACT------CTTACGTACATATGGTTCACGTTTTCTTCCTCTG----CCGTAGACCCAATCTCTTAGCATCTT-CCACTCTATACATGAtttttaat------------atg------tctcttttctttgttagatagatatgtttcttt-cctttttattattttttcttttcctctttggtt-----ttttcatcttcttcttcttcttcaaccTCCCTGATTGTGAGTCACAT-------TTAGAAGTCATCTGCCAAAAA---CTCATATTGTGGTCGG-TCC--------TCTTCTCCTCACACCTATTCATTTGACGGTGTGGCTCCAATTGGTTTTCTCATTACTTCACACCCCCCTCTAGTGC------
i caeJap4.Scaffold18194 C 0 I 112

a score=-3540.000000
s ce10.chrX             3314601 50 + 17718866 GAGTACAACGTTCGC-TTTTTCATTTCTCCATTTTTT-------------------AGAGTACCGAAAG-----T
s cb4.chrX              8401247 34 + 21540570 -------ACTCTCTC--TTTTCACTCAC---------------ATCA---------Gatgtatcaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   467893 62 -  4500979 TAGTACAACCCTCTC--TTTTCACTCGC-CGTATCTATCACGaataa---------aaagtataaaaagaGAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   581277 63 - 33334924 TAGTAcaacattctc--ttttcatttgcccgtttctttttcatctta----cGAATAGTCTACAGAAAT------
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1744217 67 +  4147112 TAGTACAactatctcttttttccactctCCGTTACTTTTTC--CTTAGATTCCATCCGTGTACAAAAGT------
i caePb3.Scfld02_0      C 0 I 78
e caeJap4.Scaffold18194  515308 112 -   823664 I

a score=-9944.000000
s ce10.chrX             3314651 55 + 17718866 -------------------------------GTCATTGGTGGTAT-AAATTGCTCTTTTGAATTTCTGGGA----ATAGTCAGGAGCAACA
s cb4.chrX              8401281 42 + 21540570 --------------------aattg------tgttcTAATGATAT---TCCACTTTTTCTAATGCCTCGTA--------------------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   467955 68 -  4500979 GTCACTACTAACTaatttggaattgaaaacAGGCCTTAATTgcat---tccaaatttttgagaggCATAAA--------------------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   581345 57 - 33334924 ------------------ACATTTAAAGGCAGCACTTAATATTATGcgttcatttcttctcaagGATGGTTTAAT----------------
i caeSp111.Scaffold629  I 5 C 0
e caePb3.Scfld02_0      1744284 78 +  4147112 I
e caeJap4.Scaffold18194  515308 112 -   823664 I

a score=476531.000000
s ce10.chrX             3314706 1207 + 17718866  
s cb4.chrX              8401325 1267 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   468025 1334 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   581402 1339 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1744362 1303 +  4147112  
i caePb3.Scfld02_0      I 78 C 0
s caeJap4.Scaffold18194  515420 1408 -   823664  
i caeJap4.Scaffold18194 I 112 I 118

a score=12996.000000
s ce10.chrX             3315913 122 + 17718866 ATAAAAA----TAATGCATAAAAATAATGCTATTTCA---------AATATCAACCAGATCTCGACCC---CTCGCAATAGTCA----------AAAA-GTCACTAAACC-TCTTCAGAA---AATTGATGACACCGATTA----------GGGGCAGGTGCA
s cb4.chrX              8402592 119 + 21540570 ATTAAAA-ATTTATGATTCCAGCATTATGCAAcattatcttcttcttctcctcacaACA--TCAAGTAGGGGCCACA--AGTCAAGATGTCGAGGAC--------------------------CGATTAGGGGGCCG--TC-----------GGGCAGGTGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   469359 128 -  4500979 ATTAACA-ATTTATGGTTCAAACATTATGCAACATTA---------TATCCCCTTAACG--TCAAATA---GCCACA--AGTCA-----TCGAGAATG-GGTACTAAATC-CATGCAATGCAATGATGATGACACCGATTA-----------GGGCAGGTGCA
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629   582741 116 - 33334924 ATTAGCAGATTTACGATTCAAACATTATGCAACA-TA---------TCTCCCTT-------------A---GTCACA--AGTCA-----ACGGGAATATGATACTAAACCGTCCTcgaga---tgatgatgacacCGATTA-----------AGGCAGGTGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1745665 132 +  4147112 ATTAGCAGATTTACGATTCAAACATTATGCAACATTA---------TATCCCATCCACA--------A---GTCACA--AGTCA-----GCGATAATA-GGTAATAAACCGTATGCCAAA---AGATGATGATTCCGATTACATCCCGATTGAGGCAGGTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  516828 118 -   823664 I

a score=-2627.000000
s ce10.chrX             3316035 13 + 17718866 TGTGTAATTGCCG-------
s cb4.chrX              8402711 14 + 21540570 -GATCCATTTAGACG-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   582857 17 - 33334924 ---TCCATCGACATTTGCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1745797 17 +  4147112 ---TCCATTGACATTTGGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  516828 118 -   823664 I
e caeRem4.Crem_Contig0   469487 29 -  4500979 I

a score=-2541.000000
s ce10.chrX             3316048 3 + 17718866 TA-A
s cb4.chrX              8402725 2 + 21540570 -C-A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   469516 3 -  4500979 TC-A
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold629   582874 3 - 33334924 GC-T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1745814 4 +  4147112 TTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  516828 118 -   823664 I

a score=273084.000000
s ce10.chrX             3316051 665 + 17718866  
s cb4.chrX              8402727 611 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   469519 751 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   582877 689 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1745818 695 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  516946 754 -   823664  
i caeJap4.Scaffold18194 I 118 I 26

a score=5249.000000
s ce10.chrX             3316716 34 + 17718866 CGAGTATCTGGTCGAGCCTATCA---------AATAAAAAAGA
s cb4.chrX              8403338 36 + 21540570 ACCCAATTCACCTGAGCATCTCG-------CTAGGTAAAAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   470270 31 -  4500979 TGCCAATTCACCTGTGTat------------tgaggaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   583566 43 - 33334924 TGTCAGTTCATCTGTGTATATTGAGGTAGACTGAGCAAAAAGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1746513 43 +  4147112 TGCCAATTCCGCTGTGTATATTGAGGTGTATTGAGTAAAAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  517700 26 -   823664 I

a score=259208.000000
s ce10.chrX             3316750  732 + 17718866  
s cb4.chrX              8403374  854 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   470301  882 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold629   583609  942 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1746556  920 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  517726 1042 -   823664  
i caeJap4.Scaffold18194 I 26 C 0

a score=403.000000
s ce10.chrX             3317482 15 + 17718866 GGAAATAG--------ATTTAGA
s cb4.chrX              8404228 19 + 21540570 ----atggtttctagtgtttttg
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold629   584551 15 - 33334924 aGTAATGG--------GTTGTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1747476 15 +  4147112 ggtaatgg--------atttttc
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold18194  518768 15 -   823664 GGTAATGG--------AAATGGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   471183 28 -  4500979 I

a score=104736.000000
s ce10.chrX             3317497 293 + 17718866 TTTTCAATTCG-----ACGTG----------AAACATGCGAAAAT---TGTGGTTGTACGCG------GCAACTCATATGATTAGAAA-----GCATTGGTTTGATTTGGTGAGCTCAAAAAATTCAATTGAG----------GATGCCAGC---------------------AGACC----CGG-----------GTCCTATTT---GCTCTTTTTAGGCACATC-TCTC--GGTAGCCTTGTTGA-----CCGCATATCAGATT-AGGCATTGTCGGAAAAAGGATGAGAATACATAATGTCAACAA-----ACGGGGCTACATGACAAAGCA---------------------TACAATGATAAGTACAC--TAAACCAAAAAATA--AAGGCGGCTGAAATATGAT
s cb4.chrX              8404252 291 + 21540570 -ttttagTACAAATTTGCgta----------gcaaaaagaaaaat----------cca------------gGCTCATTTAATTAAAAAA---CGCATTGGTTtgatttg----actgaaaaaattgaattgagtCAAAGCAC-GGCGGGAG-TCAAAG--------GGGGTCACAAAAAGAGCGG-----------GCCCTATTT---GCTCTTTTTATCCAAATT-GCTCGTGGTAG-CTTGTTGA-----CCGCAGATCAGATT-AGTCTT-----------GGCAAAGCATACA--------------------GGGGTACATGACAAAACAAGC--------------AAAACACAGGGAAGAGTAaactgtagatcaaaaaata--ttccgcTTTGTAACATGAT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   471211 319 -  4500979 ttttcatctcaaTGCAACAAA----------GATACAAAAAAGATAGACATGAGACCACCC-------GCAACTCATATGATTAGACG-----GCGTTGGTTTGATTTGGtgagctcaaaaaattcaattgag---aAGGCC-GATGTGAGCTGAAAG--------CAAACCACAACC----CGG-----------GTCCTATTT---GCTCTTTTCATCCAAATT-GGTC--GGTAG-CTTGTTGA-----CCGCACATCAGATT-AGGCCTTAGCGG---AAGGATGAGAATGCATAATGTCAACA--------TGGGGTACATGACAAAACAAGC--------------AAGGGAGAATGATAAGTACac--tagatcaaaaaatt--atgcCGGCTGAAATATGAT
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold629   584566 335 - 33334924 GTGTGAGGTCGAAAATGCGAAATGTGCAgtcgaaaaagaagggac------CAGACGACCC-------ACAACTCATATGATTAGACG-----ACGTTGGTTTGATTTGttgagctcaaaaaattgaattgga---aaGGAGAGATGTGAGCTAGAATCAGAGAGCAAACCAAAAACC----CGA-----------CGCCTATTT---GCTCTTTTTATCCAAATT-GGTC--GGTAG-CTTGTTGA-----CCGCTCATCAGATTAAGGTCCAGGCGG--AAAGGATGAGAATACATAATGTCAATA--------GGGGGTACATGACAAAACAAGC--------------AAAAGACAATGATAAGTACAC--TACATCAAAAACGGC-TTGTCGGCTGAAATATGAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1747524 325 +  4147112 ATGTGAAACCG-AAATGTGCATTGTGTataggaaagagaaaaaaa---gggcaGACCACCCA------ACAGCTCATATGATTAGACG-----ACGTTGGTTTGATTTggtgagctcaaaaaattcaattgag---aAGGATGGATGTGAGCTAAA----------AGAGCCAAAACC----CGG-----------GTCCTATTT---GCTCTTTTTATCCAAATTGGGTC--GGTAG-CTTGTTGA-----CCGCACATCAGATT-AGGCTTAGGCGG---AAGGATGAGAATGCATAATGTCAACA--------TAGGGTACATGACAAAACAAGC--------------AAGGGACAATATTAAGTACac--tagatcaaaaaatg---tgccgGCTGAAATATGAG
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold18194  518783 310 -   823664 ------------TGTTGCATA----------------------GC---CCGGGGCCCACCCAGCCGACACATTTCATATGATTAGACGAGCTAGCTGCGGTTTGATTTGGTGAGCTCAAAAAATTAGATTGAA---------------GAGCAAAA----------AGCAACACAACC----CGGAAAGCTTCTCTATCCTTTTTAGGGCTCttttttt---ATCT-GGTC--GGCAG-CTCTTTGACCGTGCCGTGCAGCAGATT-AGGCTT-----------------------GTAATGTCAACACTGGATAGATAGATACATGACAAAACAAGCGGTGGGGGCTATGGGAAGAGCAAAGATAAGTACAC---AGATCAAAAAGGGTAGTGCCGGCAGAAATTTGAC
i caeJap4.Scaffold18194 C 0 I 56

a score=-4767.000000
s ce10.chrX             3317790 19 + 17718866 AGGGTGCTCTTAAACTCTT-------------
s cb4.chrX              8404543  5 + 21540570 --------------CTCTT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   471530 13 -  4500979 ATGA------GCACCTCTT-------------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   584901 21 - 33334924 -----------CACCTCTTCTGTTATATTCTT
i caeSp111.Scaffold629  C 0 I 16
s caePb3.Scfld02_0      1747849 18 +  4147112 -----------CACTtcct---ttctgttttt
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194  519093 56 -   823664 I

a score=-1122.000000
s ce10.chrX             3317809 20 + 17718866 TCAAC-TCTTTTCCAATTAAT-----
s cb4.chrX              8404548 20 + 21540570 GAGAC-CCTTTACCTATCAAG-----
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   471547 21 -  4500979 GGGACATCTTCACCTATCAAG-----
i caeRem4.Crem_Contig0  I 4 I 14
s caePb3.Scfld02_0      1747868 24 +  4147112 -tgAA-GCATCATCTGAAGAGCACAG
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194  519093 56 -   823664 I
e caeSp111.Scaffold629   584922 16 - 33334924 I

a score=180.000000
s ce10.chrX             3317829 2 + 17718866 AA
s cb4.chrX              8404570 2 + 21540570 CC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   471582 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold629   584938 2 - 33334924 AA
i caeSp111.Scaffold629  I 16 C 0
s caePb3.Scfld02_0      1747892 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  519093 56 -   823664 I

a score=172249.000000
s ce10.chrX             3317831 187 + 17718866 ATTATGTTTCAGGAGAATGCAGTCACCAATTGGGAATGTCAAATCGAAAGATTCGTGATGAGCAAATCTCGGCGTCTTCGAGTTTCGACTTGCAAAGCACTGGACCTCAACATGCTCGGTAAGT--GGTTTGGGAACTACTCATTTGAAATTCGTA--------CTACGTTTGAATCCCTTGAAACTTTAATGCAAA
s cb4.chrX              8404572 175 + 21540570 ATAATTTTGCAGAAGAATGTAGCCACCAATTGGGAATGTCAAACCGCAAGATTCGGGATGAGCAGATTTCGGCGTCTTCGAGTTTCGACTTGCAAAGTACTGGACCACAGCATGCTCGGTAAGTGAAG--GGAGAACGA---ATTTAGAATTCGTA--------AAACGT---------TTGAAACATTAATGCAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   471584 176 -  4500979 ACTAATTTGCAGGAGAATGCAGTCACCAATTGGGAATGTCAAACCGCAAGATTCGTGATGAGCAGATCTCGGCGTCTTCGAGTTTTGACTTGCAAAGTACTGGACCTCAACACGCTCGGTAAGT--AG--GGAGAACGACTCATCGGAAATTCGTA--------AAACGT---------TTGAAACATTAATGCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   584940 176 - 33334924 ATTGTTTTACAGGAGAATGCAGTCATCAATTGGGAATGTCAAACCGCAAAATTCGTGATGAGCAGATCTCGGCTTCTTCAAGTTTCGACTTGCAAAGCACTGGACCTCAGCATGCTCGGTAAGT--GG--TGTGAACTGCTCATTGAATATTCGTA--------GGACGT---------TTGAAACATTAATGCAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1747894 176 +  4147112 ATTAATTTGCAGGAGAATGCAGTCATCAATTGGGAATGTCAAACCGCAAGATTCGTGATGAACAGATCTCAGCGTCTTCAAGCTTCGACTTGCAAAGTACTGGACCTCAACACGCTCGGTAAGT--GG--TGAGAACTCCTCATCGGAAATTCGTA--------AGACGT---------TTGAAACATTAATGTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  519149 177 -   823664 ATTAAATTACAGGGGAATGCGGTCATCGTTTGGGCATGTCAAACCGCAAAATTCGCGATGAGCAGATCTCAGCGTCTTCGAGTTTCGACTTGCAAAGCACAGGACCTCAACACGCTCGGTAAGT--GG---------ATGTCATTTGAAATTCGTATAAGTACGGAACAg---------ctgaaaaattaatgaata
i caeJap4.Scaffold18194 I 56 I 114

a score=7874.000000
s ce10.chrX             3318018 17 + 17718866 TT-------------TCCACGGACTTG-ATA
s cb4.chrX              8404747 31 + 21540570 TTTGATGCATTATGCTCCATTAAGTTGCACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   471760 17 -  4500979 TT-------------TCCATGGACTTG-ATA
i caeRem4.Crem_Contig0  C 0 I 81
s caeSp111.Scaffold629   585116 17 - 33334924 TT-------------TCCATGGACTTG-ATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748070 17 +  4147112 TT-------------TCCATGGACTTG-ATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  519326 114 -   823664 I

a score=-7385.000000
s ce10.chrX             3318035 72 + 17718866 GAAACATAGAAAATTT-GAATTACTTTCTCTCTGCCAATCCTTTTAGCATTTTCTCACGAGTTATTTGAATTG
s cb4.chrX              8404778 25 + 21540570 ---------------T-AAATAT----------TC---------------CTTATTGGGAGCT-------TCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   585133 31 - 33334924 --------------CT-AAAtgt-----tctcttc---------------cttctctcatAGT-------TCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748087 46 +  4147112 --------------CTAAAATGTTCATCTCTCTTCA------TTTGGCTTCTTTTCTGCCACT-------TTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  519326 114 -   823664 I
e caeRem4.Crem_Contig0   471777 81 -  4500979 I

a score=-7321.000000
s ce10.chrX             3318107 30 + 17718866 TGGGGACC--------GTTCAAATTT-GAA-----ATACACTAC-------
s cb4.chrX              8404803 28 + 21540570 ATAG------CTACCCGTTCAAATTA-GAaccttc----------------
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold629   585164 29 - 33334924 TAGGGACCTAATACTAATtcaaatgc-aaa---------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748133 30 +  4147112 ATGGGACCTTATATTactttaaattcaaaa---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  519440 34 -   823664 TAGGGAcc--tttttatttgaaaaga-aga--------------aaagaat
i caeJap4.Scaffold18194 I 114 C 0
e caeRem4.Crem_Contig0   471777 81 -  4500979 I

a score=279894.000000
s ce10.chrX             3318137 503 + 17718866  
s cb4.chrX              8404834 547 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   471858 535 -  4500979  
i caeRem4.Crem_Contig0  I 81 C 0
s caeSp111.Scaffold629   585193 561 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748163 547 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  519474 546 -   823664  
i caeJap4.Scaffold18194 C 0 I 8

a score=-2984.000000
s ce10.chrX             3318640 1 + 17718866 A-------
s cb4.chrX              8405381 8 + 21540570 AATTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   472393 7 -  4500979 AGTGGAA-
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold629   585754 1 - 33334924 A-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748710 1 +  4147112 A-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  520020 8 -   823664 I

a score=600.000000
s ce10.chrX             3318641 1 + 17718866 G
s cb4.chrX              8405389 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   585755 1 - 33334924 G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748711 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  520020 8 -   823664 I
e caeRem4.Crem_Contig0   472400 10 -  4500979 I

a score=-50.000000
s ce10.chrX             3318642 21 + 17718866 CCACACAACGAGAAATTGCAA-
s caeSp111.Scaffold629   585756 20 - 33334924 --GGGCAACTTGAGAAACGTAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1748712 19 +  4147112 --GGGCAACTTGAAACTTCAA-
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold18194  520020  8 -   823664 I
e cb4.chrX              8405390  0 + 21540570 C
e caeRem4.Crem_Contig0   472400 10 -  4500979 I

a score=345.000000
s ce10.chrX             3318663 35 + 17718866 TATACAATAGTATAAATATAAAATAACATACTTTT
s caeSp111.Scaffold629   585776 33 - 33334924 TGTGGAAGAACAT--ATATACATTCAgagatttct
i caeSp111.Scaffold629  C 0 I 1
e caePb3.Scfld02_0      1748731 32 +  4147112 I
e caeJap4.Scaffold18194  520020  8 -   823664 I
e cb4.chrX              8405390  0 + 21540570 C
e caeRem4.Crem_Contig0   472400 10 -  4500979 I

a score=0.000000
s ce10.chrX             3318698 423 + 17718866 TATCACTTAAAGGTGAACTACGGTCAGTAGAGAAATATTCCTAATCTTCTAAAATATCCAAATAACTTATTTTTTGTGTAGAATATTTTTATTTTCAGTCAAAAAGCGGTAAAAAACGGTTATTTTAAAAACCTCTAATTGTGaatactgtcgcatgcataaacccctactgtcttgagataggaattttccaaataaaattaaacataaaactgaatggaacatatttttttcttgatttacgatgtccaaaaaatgggtgaaaactgagttttcaccgctttttgacttgaaatgaaatttccaatattttttgaaaagttttattACAAGATTGGAAGCACCATAGGAATGTTTTTTGTCTACCTACAAGTCTCAAATTTAATACATTTAAACATTTATCGTTATGTATTGTTTTCACAT
e caePb3.Scfld02_0      1748731  32 +  4147112 I
e caeJap4.Scaffold18194  520020   8 -   823664 I
e cb4.chrX              8405390   0 + 21540570 C
e caeSp111.Scaffold629   585809   1 - 33334924 I
e caeRem4.Crem_Contig0   472400  10 -  4500979 I

a score=301.000000
s ce10.chrX             3319121 27 + 17718866 GGGAATGAATTTTATATTTTAATATTC
s caeJap4.Scaffold18194  520028 24 -   823664 GGAAATGAAGTT---GTAGTAAAGTTG
i caeJap4.Scaffold18194 I 8 C 0
e caePb3.Scfld02_0      1748731 32 +  4147112 I
e cb4.chrX              8405390  0 + 21540570 C
e caeSp111.Scaffold629   585809  1 - 33334924 I
e caeRem4.Crem_Contig0   472400 10 -  4500979 I

a score=300.000000
s ce10.chrX             3319148 1 + 17718866 C
s cb4.chrX              8405390 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194  520052 1 -   823664 C
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1748731 32 +  4147112 I
e caeSp111.Scaffold629   585809 1 - 33334924 I
e caeRem4.Crem_Contig0   472400 10 -  4500979 I

a score=-15.000000
s ce10.chrX             3319149 3 + 17718866 AAT-
s cb4.chrX              8405391 3 + 21540570 AAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   472410 3 -  4500979 aat-
i caeRem4.Crem_Contig0  I 10 C 0
s caeJap4.Scaffold18194  520053 3 -   823664 -ATT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1748731 32 +  4147112 I
e caeSp111.Scaffold629   585809 1 - 33334924 I

a score=-3769.000000
s ce10.chrX             3319152 7 + 17718866 TCAATTT---
s cb4.chrX              8405394 7 + 21540570 CCTATAT---
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   472413 7 -  4500979 tggaaat---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1748763 6 +  4147112 caaaaa----
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold18194  520056 7 -   823664 ---ACACTTG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   585809 1 - 33334924 I

a score=282412.000000
s ce10.chrX             3319159 453 + 17718866  
s cb4.chrX              8405407 442 + 21540570  
i cb4.chrX              I 6 I 9
s caeRem4.Crem_Contig0   472420 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   585810 457 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1748769 457 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  520063 456 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=4856.000000
s ce10.chrX             3319612 25 + 17718866 GACACACCATTTTGACACACCATTC----------
s caeRem4.Crem_Contig0   472867 16 -  4500979 ---------TTTTGACACGCCATTC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   586267 16 - 33334924 ---------TTTTGACACGCAATTC----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1749226 16 +  4147112 ---------TTTTGACACGCTATTC----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  520519 22 -   823664 -------------GACACGTCGTTTGTACTCTCAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8405849  9 + 21540570 I

a score=295249.000000
s ce10.chrX             3319637 812 + 17718866  
s cb4.chrX              8405858 795 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   472883 834 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   586283 832 - 33334924  
i caeSp111.Scaffold629  C 0 I 130
s caePb3.Scfld02_0      1749242 858 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  520541 881 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-200.000000
s ce10.chrX             3320449 16 + 17718866 TGCTT-CAGTAATCCTT
s cb4.chrX              8406653 11 + 21540570 ------CCGTAATCCTA
i cb4.chrX              C 0 I 70
s caeRem4.Crem_Contig0   473717 10 -  4500979 -------TGTAATCTTT
i caeRem4.Crem_Contig0  C 0 I 124
s caePb3.Scfld02_0      1750100 17 +  4147112 TGGATGCCGTAATCTTT
i caePb3.Scfld02_0      C 0 I 137
s caeJap4.Scaffold18194  521422 11 -   823664 TTGATTCGGTA------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   587115 130 - 33334924 I

a score=0.000000
s ce10.chrX             3320465 25 + 17718866 GGCGGAATAAAAGTGTTATGCGGAT
e caePb3.Scfld02_0      1750117 137 +  4147112 I
e caeJap4.Scaffold18194  521433  0 -   823664 C
e cb4.chrX              8406664 70 + 21540570 I
e caeSp111.Scaffold629   587115 130 - 33334924 I
e caeRem4.Crem_Contig0   473727 124 -  4500979 I

a score=249.000000
s ce10.chrX             3320490 31 + 17718866 AACCGTTCGTCGCAGGATTACCTAATAGACT
s caeJap4.Scaffold18194  521433 15 -   823664 ----------------ATAACCAGATGGACT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1750117 137 +  4147112 I
e cb4.chrX              8406664 70 + 21540570 I
e caeSp111.Scaffold629   587115 130 - 33334924 I
e caeRem4.Crem_Contig0   473727 124 -  4500979 I

a score=-12098.000000
s ce10.chrX             3320521 160 + 17718866 ATTTGGG-------------AATAAATAAGAAT-------------AAATTGTAGTGAATAATGAATTGAGGCAGTTTATTTTTTGTATATTTT---------------TTTTGTTGATATTTTTGCAA------------ATTGTTCAAATGAT-TATAACTTCGAATGAATTAATAAAATACTGCT-CAAAACTATATTAACTTGTGTTTGCA
s cb4.chrX              8406734 213 + 21540570 ATTAGGGCGTACAGATGTGAAATATATGCAAACCTGCTAAAACGTGAAGTTGTAC--AGTACTGAACTAATTTATAttatgttttaaatttttcagagaggcAAACAACTTTAGTTAGGCTTTCTGAAATAGCAGTACAGAATGTTTcatataatctgaaaaatgcagAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACAtttttttGTA
i cb4.chrX              I 70 I 18
s caeJap4.Scaffold18194  521448  45 -   823664 -------------------------------------------------------------CTTAAGGGAAATATATTGTGTTACAAGCTATCT----------------------GAGACATCAGGA---------------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1750117 137 +  4147112 I
e caeSp111.Scaffold629   587115 130 - 33334924 I
e caeRem4.Crem_Contig0   473727 124 -  4500979 I

a score=-214.000000
s ce10.chrX             3320681 25 + 17718866 TGTATTAGGAATTCACTAAATTcat
s caeJap4.Scaffold18194  521493 15 -   823664 -------AAAAATGACTAATTT---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1750117 137 +  4147112 I
e cb4.chrX              8406947 18 + 21540570 I
e caeSp111.Scaffold629   587115 130 - 33334924 I
e caeRem4.Crem_Contig0   473727 124 -  4500979 I

a score=-20082.000000
s ce10.chrX             3320706 303 + 17718866 gggaaaaaataaagcgttcgacatctcataagtcttgttttgatgatgataaataaaacgactataactcaaaaactacatttaataaaaagtttgtgaaagtcacaTTTGTTTGAAAAA-------TTTGCAAAATTAAAAAAAAAACTCATTGGCCAGCA--CTGT------AAATGAACATCACTTTTGCTCTATTGAAACAAAATTCCATGT---TTTATACCTTCTGAGAAATCTAACGCCATGAAAAATTCAAAAAAATTTTGTTGTCATTTTACAGGTGTTGATTTTAGTGTTTC---------ATCCAATTTATCGTTAA--------------------TT
s cb4.chrX              8406965 277 + 21540570 GTTATAAAATAGCACAATTATCAGCTCA--ATTCTATTTTTG-------------------CCAT--TTTAGGCACtttttttGGTGACAA-------------AGGTTTATCTTAAAGAAATCGAGCTGgtatcatctgaaaaaaagcttaTCCCATAGTATTCTGT------AAA-----------------CCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAAC-----------AGAGccaaacataattttttttgtgtaatac---tgtgaattcaattttttcgaaatttgaactCAATCCCACTTTAGCTGTTCTTCacaaaatgctttt
i cb4.chrX              I 18 C 0
s caeJap4.Scaffold18194  521508 122 -   823664 GGGGAGGAAT-----------CATTTCCTAATTATTAATATA------GAACACCAAACGACGAT---------------------GACAA----------------------GTAGACA-------ATAGCG-----CACGAAACCATATGTTGAACAATA--TTGTTCGCCCAAA-----------------TTGTTTGAATACATGATGA-----------------------------------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1750117 137 +  4147112 I
e caeSp111.Scaffold629   587115 130 - 33334924 I
e caeRem4.Crem_Contig0   473727 124 -  4500979 I

a score=1356659.000000
s ce10.chrX             3321009 2095 + 17718866  
s cb4.chrX              8407242 1886 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   473851 2048 -  4500979  
i caeRem4.Crem_Contig0  I 124 C 0
s caeSp111.Scaffold629   587245 1995 - 33334924  
i caeSp111.Scaffold629  I 130 C 0
s caePb3.Scfld02_0      1750254 2177 +  4147112  
i caePb3.Scfld02_0      I 137 C 0
s caeJap4.Scaffold18194  521630 1913 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1863.000000
s ce10.chrX             3323104 4 + 17718866 GCAT
s cb4.chrX              8409128 4 + 21540570 TCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   475899 4 -  4500979 ACAT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      1752431 4 +  4147112 TCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  523543 4 -   823664 TCAT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   589240 0 - 33334924 C

a score=779.000000
s ce10.chrX             3323108 38 + 17718866 AGGTAAGCATTTTGTGCATTAATGGTGAAAGATTTATA
s caePb3.Scfld02_0      1752435 35 +  4147112 AGGtatccattattt---ttcatggaaacaAATCCATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  523547  0 -   823664 C
e cb4.chrX              8409132  0 + 21540570 C
e caeSp111.Scaffold629   589240  0 - 33334924 C
e caeRem4.Crem_Contig0   475903  1 -  4500979 I

a score=0.000000
s ce10.chrX             3323146 224 + 17718866 GCTTGAACTTGAGAAAAAAAATTTCTTTACCTGTAGCTCGAAAGTTATGTCCTAGACTCCCAGTGCTCCATTTCAACAAAACAACTAAAATAGTTGAACACTTTTATGTAGGCCAAACATAATCGAAATATAAGCTGTTGAAAAATTAATAGTGGTGTAAATTTAATAGGAAAAATAAGATAATTAGTACTGTTTATTATACCTTGAATAATTTTATTTAACTT
e caePb3.Scfld02_0      1752470   0 +  4147112 C
e caeJap4.Scaffold18194  523547   0 -   823664 C
e cb4.chrX              8409132   0 + 21540570 C
e caeSp111.Scaffold629   589240   0 - 33334924 C
e caeRem4.Crem_Contig0   475903   1 -  4500979 I

a score=-1368.000000
s ce10.chrX             3323370 62 + 17718866 CAACATTATTTTAACTTAAATTAGACAAAACCCGAACACCCCGGAGTTAAAAAAAGTGGTTC
s caePb3.Scfld02_0      1752470 10 +  4147112 CGTCATTATT----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  523547  0 -   823664 C
e cb4.chrX              8409132  0 + 21540570 C
e caeSp111.Scaffold629   589240  0 - 33334924 C
e caeRem4.Crem_Contig0   475903  1 -  4500979 I

a score=631.000000
s ce10.chrX             3323432 4 + 17718866 TTAC
s caeSp111.Scaffold629   589240 4 - 33334924 TCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1752480 4 +  4147112 TTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  523547 0 -   823664 C
e cb4.chrX              8409132 0 + 21540570 C
e caeRem4.Crem_Contig0   475903 1 -  4500979 I

a score=910.000000
s ce10.chrX             3323436 1 + 17718866 A
s cb4.chrX              8409132 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   589244 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1752484 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  523547 1 -   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   475903 1 -  4500979 I

a score=159901.000000
s ce10.chrX             3323437 154 + 17718866 GAGATATTGCTGCTCGAAATTGCCTTGTTGACGGAGAAGGCAATGTAAAAATTGCCGATTTCGGAATGGCCCGATCTCTTTATTCTCAAGAATATTACAAAGTTGAGGGAAAGTTTGTGCTCCCGATTCGCTGGATGGCATGGGAAGCTTTGCT
s cb4.chrX              8409133 154 + 21540570 GAGATATCGCAGCAAGAAATTGCTTAGTGGATGGAGAAGGAAATGTGAAGATTGCCGATTTTGGAATGGCTCGCTCCCTTTACTCACAAGAGTATTATAAGGTCGAGGGAAAATTTGTTCTCCCGATCCGATGGATGGCTTGGGAGGCTTTGCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   475904 154 -  4500979 GAGATATTGCTGCCAGAAACTGTTTAGTCGATGGAGAAGGAAATGTCAAGATTGCTGATTTTGGAATGGCTCGATCGCTCTACTCTCAAGAATATTACAAAGTTGAGGGCAAATTCGTGCTTCCGATTCGATGGATGGCTTGGGAAGCATTGCT
i caeRem4.Crem_Contig0  I 1 I 51
s caeSp111.Scaffold629   589245 154 - 33334924 GAGACATTGCTGCTCGTAACTGTTTAGTCGACGGAGAAGGAAACGTCAAAATTGCCGATTTTGGAATGGCTCGTTCTCTCTATTCTCAAGAATACTACAAAGTCGAAGGCAAATTTGTTTTGCCGATCCGATGGATGGCTTGGGAAGCTCTGCT
i caeSp111.Scaffold629  C 0 I 47
s caePb3.Scfld02_0      1752485 154 +  4147112 GAGATATTGCGGCACGCAATTGTTTGGTTGATGGAGAAGGAAATGTCAAAATCGCGGATTTCGGAATGGCTCGCTCTCTTTACTCCCAAGAATATTACAAGGTTGAGGGCAAATTTGTTCTGCCAATCAGATGGATGGCTTGGGAAGCTTTGCT
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18194  523548 154 -   823664 GAGATATTGCTGCGCGCAATTGTTTAGTGGATGGAGAAGGAAATGTCAAAATTGCTGATTTTGGTATGGCTCGCTCGCTCTATTCACAAGAATATTACAAAGTGGAGGGCAAATTCGTGTTGCCTATTCGCTGGATGGCGTGGGAGGCGTTGCT
i caeJap4.Scaffold18194 C 0 C 0

a score=273.000000
s ce10.chrX             3323591 1 + 17718866 A
s caePb3.Scfld02_0      1752661 1 +  4147112 A
i caePb3.Scfld02_0      I 22 I 27
s caeJap4.Scaffold18194  523702 1 -   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8409287 1 + 21540570 I
e caeSp111.Scaffold629   589399 47 - 33334924 I
e caeRem4.Crem_Contig0   476058 51 -  4500979 I

a score=-13180.000000
s ce10.chrX             3323592  3 + 17718866 CT-------------------------------------------------------C
s cb4.chrX              8409288 48 + 21540570 CTGGTAA-GTCAATAGA--------GAGATTTGCATCAC-ATagaatgttcttttttc
i cb4.chrX              I 1 I 2
s caeSp111.Scaffold629   589446  1 - 33334924 ---------------------------------------------------------c
i caeSp111.Scaffold629  I 47 I 2
s caePb3.Scfld02_0      1752689  1 +  4147112 ---------------------------------------------------------c
i caePb3.Scfld02_0      I 27 I 2
s caeJap4.Scaffold18194  523703 58 -   823664 TTGGTAATAAGAATAAACTTTTTTCGGGATGTAGATGActataaaacattttttatag
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   476058 51 -  4500979 I

a score=391910.000000
s ce10.chrX             3323595 817 + 17718866  
s cb4.chrX              8409338 863 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   476109 889 -  4500979  
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold629   589449 801 - 33334924  
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1752692 800 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  523761 821 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=100.000000
s ce10.chrX             3324412 1 + 17718866 G
s caeJap4.Scaffold18194  524582 1 -   823664 g
i caeJap4.Scaffold18194 C 0 I 189
e caePb3.Scfld02_0      1753492 0 +  4147112 C
e cb4.chrX              8410201 0 + 21540570 C
e caeSp111.Scaffold629   590250 0 - 33334924 C
e caeRem4.Crem_Contig0   476998 0 -  4500979 C

a score=-13566.000000
s ce10.chrX             3324413 107 + 17718866 CAATTCTGGATATAGTATATATATATAAATATGAT--AAGTTGGGTTCTTTAAAGAAACTGGAGATGTAAAAAATGGAAAAAGATTTACCAACAAAGTGTATGAAACGG
s caeRem4.Crem_Contig0   476998  31 -  4500979 --------------GGAAATAGACGAAAATAAACTTGATGTCTTT----------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   590250  41 - 33334924 -------------ag--aataatt---attttatt--agaGCAGTTTAATTGAA----------------------------------CCAATAA--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1753492  41 +  4147112 -------------GGAAAACAATTCACGCTatatttgaaaactggttattggaa-------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  524583 189 -   823664 I
e cb4.chrX              8410201   0 + 21540570 C

a score=30752.000000
s ce10.chrX             3324520 164 + 17718866 GAAACAAATTACAAATCTTTGAAATAAACACTTTTTCTACCCGACAAATGTAACATTACAGTACAATTGAATACTTACATCTCCGCTCAAATTGTCCCAATCAACTGAAGTTGGGAGTGATGATTGCTTTCTTTCCCGAATTGGTTGGATGATAGGAAGTGCTG
s cb4.chrX              8410201 124 + 21540570 ----GAAGCA--AAACCcttataattgtttttttt-----------------------------aat--tcggtCCACCTCGTCACTCAAATTATTCCAATCTATCGCTTCTGGTTTTGCAGA---TTTCCTCTCGCGAATTGGTTGAATTATTGGAAGAGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   477029 109 -  4500979 ------------acattctaaaaataattttt-------------------------------------------cacctCGCCGCTCAAATTATCCCAGTCTATTGGTGCTGGCTTTGGTGAGATCTTTCTTTCACGTATTGGTTGAATAATTGGAAGTGCTG
i caeRem4.Crem_Contig0  C 0 I 69
s caeSp111.Scaffold629   590291 124 - 33334924 -GAATAATTT--CCAATGTCAAAACAGAAACT-------------------------------------TAGTCTCACATCATCACTCAAATTATCCCAGTCTATCGGTGTTGGTTTTGGTGAACTCTTTCTTTCACGAATCGGTTGAATTATCGGAAGTGCTG
i caeSp111.Scaffold629  C 0 I 62
s caePb3.Scfld02_0      1753533 112 +  4147112 --aataa-------------acaATAAGACTT-------------------------------------GAAACTGACATCAGCACTCAAATTATCCCAGTCTATCGGCGCGGGACTTGgcgattttttcctttcacgAATAGGTTGAATGATTGGAAGAGCTG
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18194  524583 189 -   823664 I

a score=0.000000
s ce10.chrX             3324684 28 + 17718866 TCaaaatttttttaatttaatatttaaa
e caePb3.Scfld02_0      1753645 36 +  4147112 I
e caeJap4.Scaffold18194  524583 189 -   823664 I
e cb4.chrX              8410325  0 + 21540570 C
e caeSp111.Scaffold629   590415 62 - 33334924 I
e caeRem4.Crem_Contig0   477138 69 -  4500979 I

a score=-4247.000000
s ce10.chrX             3324712 447 + 17718866 taGTTAGCAATATACCATAGCTCTATGAATTCTAGTATTAGAAAGTTACCAGGAAAATCCAAAAAACTTTTCACACAAATCAAGTTTGCTCTGATCTCATATAAATAGGCAAAAAAGTTAACGAAACATTTTGGAATGTATAATTTCAACGTGAACTTTCAAACTTCTTATCA------AGCTAATCTGCGTCAGGCTTTTGTGCAG-----CAGATATATTTTCTTTTCCGATTTTTTTTTTCCAATG-----TAATTTATGTTATGTATACCTTTATTAC-CGAACTCCTAGGTGAACATATTTCAATTGCAATTTGAATTAATACTTTTGAACGAACTTTTGAACTTTTGAATAATTTTGAATTTGAATGAATACAGGAAAAACATTATTGATTTTTTTTGCATAGGTATTTGAAAACAGAGGAAAACTTGAAGTCAAACAATTTTGCTTACGATTAACTG
s cb4.chrX              8410325 258 + 21540570 -------------------------------------------------AAGAAACATCCGaaaca-tttttatagaaa-----tttaCTATG---------AAATATGCAATAGAA-----------------------------------GAGCTTTCAAA----TTATCAAGTCAtagcttatttatctc-ggttcttatgcaAGATTCCAGAAATG--------------------TGTCAAACGACCAAAAACttatgat---------tttatgataaaaaatcatCAGTGAACAGATATC-----------------------TCACATGAGCCC---------------------AATATGACTGGAAGTAGAAA----attgagggcccttctaatacag---------acTGTAGGGTATTTTGAAGCTATAA----------------ACCTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1753645  36 +  4147112 I
e caeJap4.Scaffold18194  524583 189 -   823664 I
e caeSp111.Scaffold629   590415  62 - 33334924 I
e caeRem4.Crem_Contig0   477138  69 -  4500979 I

a score=-182.000000
s ce10.chrX             3325159 9 + 17718866 TTTCCGGCA
s cb4.chrX              8410583 5 + 21540570 TTTTC----
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194  524772 9 -   823664 TTTACAACG
i caeJap4.Scaffold18194 I 189 C 0
e caePb3.Scfld02_0      1753645 36 +  4147112 I
e caeSp111.Scaffold629   590415 62 - 33334924 I
e caeRem4.Crem_Contig0   477138 69 -  4500979 I

a score=-2096.000000
s ce10.chrX             3325168 11 + 17718866 AGATTGTCAAA
s cb4.chrX              8410588  1 + 21540570 ----------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   477207 10 -  4500979 AGATT-TTGAA
i caeRem4.Crem_Contig0  I 69 C 0
s caeJap4.Scaffold18194  524781  7 -   823664 AGATTCA----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1753645 36 +  4147112 I
e caeSp111.Scaffold629   590415 62 - 33334924 I

a score=250385.000000
s ce10.chrX             3325179 283 + 17718866 CTTACATTGCCTTTTAGCTTTTGCCGGTGTCGAAACGACAGGTTGTGGCGGTGG---TGGTGCGGGTGTGCTTGACTGAAGAACAACAATCATAATAATTTTTAATCCTAT-------------------CTCATG---------------AAAACTTGCCGGCGTTTTTGAAAGCCGTCCTTTATATTCGTCATACAGTTGATATTTCCCGTTTTTGAGACTTTGAATGGTTTCTGTGGTGGCCGTTGAAGCTCGACGCTCCCGGTTCTTGTAGTCCATCCAATCCTCATAGAACTTGTTAGCTTTTGTTGCCT-G--TTAT
s cb4.chrX              8410589 307 + 21540570 CTGACATTGTCTCTTGGCTTTGGCGGATGTCGACACGACAGGTTGA---GGTGG---TGGTGTGGGTGTGCTTGACTGAAGAATAACAATCATCATAATTTTTAATCCTAT--------TCCCTCTCCCTCTCTGTCTGTATATATCCCCAGAAACTTGCCGGCGTTTTCGAAAGCCGCGCTTTGTATTCGTCATAAAGCTGATATTTCCcgtttttgagacttttaaTCGTTTCGGTGGTGGCCGATGAAGCTCGACGCTCACGATTCTTGTAGTCCATCCAATCTTCGTAGAATTGGTGCGCATTGTTGGTCT-G-ATCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   477217 298 -  4500979 CTCACACTGTCTCTTAGCTTTAGCTGATGTCGAAACAACAGGTTGA---GGTGGTGTTGGTGTTGGTGTGCTTGACTGAAGAACAACAatcataataatttttaatccTAT--------CCCCTTTGTATCCCTCT-----------TCCCAAAACTTGCCGGCGTTTTCGAAAGCCGCGCTTTATATTCGTCATAAAGCTGATATTTCCCGTTTTTGAGACTTTGAATGGTTTCGGTGGTGGCCGATGAAGCTCGACGCTCACGATTCTTATAGTCCATCCAATCCTCATAGAACTTgttagctacagtaacct-g--taAT
i caeRem4.Crem_Contig0  C 0 I 102
s caeSp111.Scaffold629   590477 285 - 33334924 CTCACATTGTCTCTTTGCTTGTGCTAATCTTGAAACGACAGGTTGAGGCGGTGG---TGGTGTAGGTGTGCTTGACTGCAGAACAACATTCAT----AATTTTAATCCTAT--------CCCC-------CCATTC-----------TGCCAAAACTTGCCGGCGTTTTCGAAAGACGCGCTTTGTATTCGTCATAAAGCTGATATTTCCCGTTTTTGAGACTTTGAATCGTTTCGGTGGTGGCCGTTGAAGCTCGACGCTCACGATTCTTGTAGTCCATCCAATCCTCGTAAAACTTGTTAGCATTTGTTGCCTAG--G---
i caeSp111.Scaffold629  I 62 C 0
s caePb3.Scfld02_0      1753681 293 +  4147112 CTCACATTGTCTTTTAGCTTTTGCTAGTGTAGAAACAACAGGTTGA---GGTGG---TGGTGTTGGTGTGCTTGACTGCAGAACAACAATCATAATAAATTTTAATCCAATTGcaaccccccc-------cccttt-----------tcccAAAACTTGCCGGCGTTTTGGAAAGCCGCGCTTTATACTCGTCATAAAGCTGATATTTCCCGTTTTTGAGACTTTGAATCGTTTCGGTTGTTGCCGATGAAGCTCGACGCTCACGATTCTTGTAGTCCATCCAATCCTCGTAAAACTTGTTAGCAGCATTTGCCT-G--T---
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18194  524788 277 -   823664 CTCACACTTTCTTCTGGATGTAGGCGCCGGTGAAACAACAGGTTGT---GGTGG---TTGTGTCGGTGTGCTTGACTGCAGAACAACAATCAT----AACTTTAATCCTAT------------------------T-----------TCATAAAACTTGCCGGCGTTTTCGAAAATCGGGCTTTGTACTCGTCGTAAAGGCgaaattttccacctttcacGCTTTTAATCGTTTCTGTGGTGGCCGTTGAGGCTCGACGCTCACGACTTCTGAAATCCATCCAGTCCTCGTAAAACTCATTTGCCGCAGTGGCCT-AAATAAT
i caeJap4.Scaffold18194 C 0 C 0

a score=895.000000
s ce10.chrX             3325462 6 + 17718866 AATATT
s cb4.chrX              8410896 6 + 21540570 AGTTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   590762 6 - 33334924 ATTATT
i caeSp111.Scaffold629  C 0 I 69
s caePb3.Scfld02_0      1753974 6 +  4147112 AATATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  525065 6 -   823664 TAGATT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   477515 102 -  4500979 I

a score=273.000000
s ce10.chrX             3325468 3 + 17718866 TTA
s caeJap4.Scaffold18194  525071 3 -   823664 TTA
i caeJap4.Scaffold18194 C 0 I 301
e caePb3.Scfld02_0      1753980 0 +  4147112 C
e cb4.chrX              8410902 0 + 21540570 C
e caeSp111.Scaffold629   590768 69 - 33334924 I
e caeRem4.Crem_Contig0   477515 102 -  4500979 I

a score=-32045.000000
s ce10.chrX             3325471 669 + 17718866  
s cb4.chrX              8410902 481 + 21540570  
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0      1753980 350 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  525074 301 -   823664 I
e caeSp111.Scaffold629   590768  69 - 33334924 I
e caeRem4.Crem_Contig0   477515 102 -  4500979 I

a score=0.000000
s ce10.chrX             3326140 7 + 17718866 tattttt
e caePb3.Scfld02_0      1754330 0 +  4147112 C
e caeJap4.Scaffold18194  525074 301 -   823664 I
e cb4.chrX              8411383 5 + 21540570 I
e caeSp111.Scaffold629   590768 69 - 33334924 I
e caeRem4.Crem_Contig0   477515 102 -  4500979 I

a score=8311.000000
s ce10.chrX             3326147 236 + 17718866 --ttttcaaatttaaattttaaaaaCTTACTTTTTGCCGTGCTGCCATATTTGC-AACAATAATAAATAAAATGGATATATGCTGTTTCTTTTTGATTTTCGAGTTCAAATCCATCCATCTCGTAGCTTC----------CCATTTTTTCGCGTTGCCACTAGCAATTGC--------ATGT--TTCCCTTCT-TATTATGACCGAAAAAAATTCAAT-------T-------CGGAGAC----------TAGAGGCAAGTT-----------TGC----AGAGCTAGATAGATTCGAA
s cb4.chrX              8411388 250 + 21540570 --ttc---ac---gttttcttaAAACTCACTCTTTGCCTCGGTGCTGCCATGAT-GAGAAGAA---TAAAAG------TATTATGTCTCTTTTCGATGtttgaaacc-aatttttttctttcattccGTCCTGACCCCATCCA--TCCGTCCGTTACCCCTAGCAATCACGCGCACG-CCACCATCTCATTCCGTTTCAC--------AAAATTTATTCTTTCC-C--CCAATATGCCAC--CCAAACAAGAGGAATGAGCA-----ACATCTTGC-Tctgggaggaaaaa--------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   477617 233 -  4500979 --ttctgaaa---aaatactgaaaactcactttttgttttgcgGCCATTTCGAT-GTAGAGAA---------------TATGTTGTTTCTTTCcgatttctgaattcaaattcatcTCTCTCATGGCTTC----------CCG--TTGGCGCGTTGCTATTGGTAATCACGAAAAAG-CCAT--TTTATTTCcgatttat------------tttattcatccC-TAGTCAA-ATGCCACCGCTCGACTCTAAGAATGATGA---------CAtgt-tcgaaaagaaaaaata------
i caeRem4.Crem_Contig0  I 102 C 0
s caeSp111.Scaffold629   590837 241 - 33334924 -ttttgaaaa---taactttttgaacttacTTTCTGTCTTGCCTGCATTTTGAGAgtcgaaaaaggaaaaaa------tgcgTTGTTTTTTGCTGGTTTTTGACTTCGAATTCATCCATCTTATGCATTT----------CAT--TTTGCGCGTTGCCATTAGCAATCACTTCGGAG-CCca--tcccatttt-tttcat--------aaatttcattcttcccGC-------ATGAAAC----------AAGAAACGTTTGGAGAAGCAAAATGc-cctgaaagaaaataga------
i caeSp111.Scaffold629  I 69 C 0
s caePb3.Scfld02_0      1754330 238 +  4147112 actcgaaaaa---aaaatgtttcaactcACTCGTTGTCTCGCAGCCATTTTGAT-GTTGAAGAATGAAataa-------gaatgttttttttccgatttttgaattcgaattcatCCATCTCGTGGCCCC----------TCA--TATGCGGGTTGCCATTGGCAATTACTTCCGAGcccca--tttcatttt-ttttct--cc----cgtttTCATTCTTCCC-C-------ATCAGAC----------CACAAACGTTTT-----GCGAAATGCACaggaaagaaaataga------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  525074 301 -   823664 I

a score=230288.000000
s ce10.chrX             3326383 332 + 17718866 AAAAAAGTTGACGGAAATAGTGGAAATTGTTGCAC-ACTCTCCTGAACATCTAAAAACGAAAACACAGCACGAC------ACAGTCATTAACAAGACAAATTAAAGCCTA--------------AAATCACAGCGTAATACTATTGTCAGCGGCTGCC-AATTCTATTGTTTTCGAGCCCCCAGGTGGACGGCGGCCGG-CCTCGTTTTCCGGCTAATGTACCCGG--GCGGCGCCC-CAAATGTTTGCCGCGCAGCTT-GCTCCG--TCGCCACCCATGCACAACCATCTTCGGGATTCATCACACCTTATTTCCTCACAC----CT---GT---CAGGTC-----GTTCATGATTTCCCGATTTATTCTCATTT
s cb4.chrX              8411638 333 + 21540570 -agaaagttgaC---------GGAAATTGTTTCACTCTGCT----------TGCAAATGAAAACACACGATAAC------AAAGTCATtaacaagcgaaaaaaaaa-tcaggagaatcttctggaaatttcggcGTAATACCATTGTCATTGACTGCCAAATTCTATTGTTTTCAAGTC-----ACGGGCAAAATCGCGTCGTCGTTTTCCGGCTAATGTACCCGG--GGGGTTGCCTCGAATGTTTGCCGCGCAGCTT-GCTCCGCACCGCCACCCATGCACAACCATCTTCGGGATTCATCACACCTCATTTCCTCACAC----CT---GTCGCCGGATCGACGAGACAACCATTT-Tcgattgttcttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   477850 302 -  4500979 gaaaaagttgaC---------GGAAATTGtttcac-ctg---------------aaaacaaaacacacGATGAC------AAAGTCATTAACaagcaaaaatgaag-cta--------------aaaTCTTAACGTAATACCATTGTCGTTGGTTGCC-AATTCTATTGTTTTCAAGCC-AAAGACGGCCGACGGCTTG-CGTCGTTTTCCGGCTAATGTAGCC----GAGGCTGC--GGAATGTTTGCCGCGCAGCTT-GCTCCG--CCGCCACCCATGCACAACCATCTTCGGGATTCATCACACCTCATTTCCTCACAC----CT---GT---CGGGTC-----GACCATGATTT-CCGATTCGTTTTCATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   591078 302 - 33334924 agaaaagttgAC---------GGAAATTGTTTCAC-TCA---------------TGAGCAAAACAGACGATGAC------AAAGTCATTAACAAGCAAAAATGGAG-CTA--------------AAATCTCAGCGTAATACCATTGTCAACGGTTGCC-AATTCTATTGTTTTCAAGTC--AAGGCGATCGGCGACTTG-CTTCGTTTTCCGGCTAATGTACCCGGGTGGGCCTGC--GGAATGTTTGCCGCGCAGCTT-GCTCCG--CCGCCACCCATGCACAACCATCTTCGGGATTCATCACACCTCATTTCCTCACAC----CT---GT---CGGGTC-----GCCCATGATTT-ccgattcatttttc---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1754568 305 +  4147112 --aaaagttgac---------ggaaattgtttcac-aca---------------aaaacaaaacacaagatgac------aaagTCATTAACAAGCTAAAATGAAGCCTA--------------AAATCTGAGCGTAATACCATTGTCAACGGTTGCC-AATTCTATTGTTTTCAAGTC--AAGGCGGTCGGCGGCTTG-CGTCGTTTTCCGGCTAATGTAGCCGG--GGGCCAGC--GGAATGTTTGCCGCGCAGCTT-GCTCCG--CCGCCACCCATGCACAACCATCTTCGGGATTCATCACACCTCATTTCCTCACAC----CTGTCGT---CGGGTC-----GACCATGATTT-CCGATTCATATTTCGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  525375 303 -   823664 AAGAAAGTTGAC---------GGAAATTGTTGCGC-TGG-----------cggcaaaacaaaacacatgaaaattgacaaaaagtcATTGACAAGCGAAAATGAGG-CCA--------------AG--CTCAACGTAATACTATTGTCGTCGTCTGGC-AATTCCATTGTTTTCAAATC--AGAGCCAGAGCTAGCTTG-CGTCGTTTTGCGGCAAATGAACC-----GGGGCGGC--GGAATGTTTGCCGCGCAGCTTGGCTTCT--TCCCCCGCCCTGCGCAACCATCTTTGGGACTCATCACACCTCATTTTCTCACCCTTAGCT---GT---TAGTtc---------------c-tagatttttttttgttt
i caeJap4.Scaffold18194 I 301 I 193

a score=-63463.000000
s ce10.chrX             3326715 265 + 17718866 CAATTAGCATTGATTTTTATCCAGATTTTTT-TG----------------TTATCATTTTTTTACAT---------------TGTACAAAGTGTTGTTGGTCTATGTATAAGATTCCAAAAAAGACCAAGACACAATTCAT------------------TAA--AATTCATGAGG-GGA--------GTGG------------------------TGAT-TGAA-----AGAAGAAAATTTGCATATATCCTCGGGTTTTCAAATTTTCAAGCCGTCACAACAATGTTTC---------------TTTTTG--------------CTTGCTTCGAGAAAGTGTCATGAAAATTTT----------TACGCGTTTTTTT-----------TTAATTTTGAAGTTAAC-------------------------------
s cb4.chrX              8411971 173 + 21540570 t------caattgtca--ACCAATAATTCTCATT----------------TTTGCGGTCATTC---C---------------CGCAAAAAGTTTTGT-----------------------------------CGTATacca------------------caattttttcaagtggcgAATGT------TGG------------------------CAGT-TGAA---------------------------Tctagttctctttttttcc--------------tatttttttcacatGTCAACCTATTTGA-------------CCT-------------------------------------TATTCGTT----------------TGACTgtaaaaaattgc-------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   478152 151 -  4500979 ----------TGGTCATTGCCaatggttttt-tt----------------ctcgatttccgAC---T---------------CTCACAAAGTTTTGT-----------------------------------ACAATGCCC------------------CAA--CTTTCAAGTGG-GAAAAT------TGG------------------------CAGTAAAAA---------------------------TCCAGTTCTTctcattgtc---------------atttt-----------------tttga-------------cCT-------------------------------------TATGAGTTA---------------CCCCTTCTTGAAATTGC-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   591380 194 - 33334924 ------------gtcactttgaattgtcttt-tt----------------tcttctttactct---t---------------acaaaaaagttttgt-----------------------------------tcAATAC--------------------CAA--TTTTCAAGTAT-GTATGT-----GTGT------------------------GGGT-TGAA-------TGGA----TTGCCAGTCACATCTAGTTTCCCAATTTCCC--------------CATCCT---------------TCTTTGA-------------CCT--------------------CACTTATAGT-------------------------------TGCTTTTCTGG--TGTTCTGGGATG--TTTTTTGGGTGTGTTGGTAAC
i caeSp111.Scaffold629  C 0 I 112
s caePb3.Scfld02_0      1754873 368 +  4147112 T---------TGGTCATtgccaatagttttt-ttggcaATCCTCACCaagttttgttcaattt---tcaagtggTAGGGTTGCCAGTAACATCTAGTTCTTCCCAATTTG----------------------TCAACACTTTTGACCTTATTCGTTCTGCAT--TCTTTAACCAC-GGGTGTTTTGGGTGTAGCATCGAGAAAAACACACAAACAAAGT-TAAAATTCAAGGAGG----GTGTGGTTCGTGTCTTGGCATGAAATTTGCA--------------TATTTT----ACACGGGCcgctttttgaagaaaacacaaaTCTTGCT-----GAAGATTTATAACACTCATAGTGTTGAGATATATGTTTCATCTGCCCGATtcgtgattttcaaaacttttctgaaacgaCTTTTCTTGTTCAGTGAGC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  525678 193 -   823664 I

a score=-23925.000000
s ce10.chrX             3326980 139 + 17718866 -----TATTTTTTACC------------CTAAAATCATCTGACGTTTCATATTGAAAAAAA----------AATGTTATAGATT----TGATTGTTATGGATTTTACT-----ATTTTTGGTTTTAACCATTCA-------------------Gttttttttttaaatttaattag----aattaaatGT-------------------------TATTCAAC-----------
s cb4.chrX              8412144 199 + 21540570 -----attttttgggtGTGGAGAGTAggcagaaa----------------atggaaaaaca----acaaataacGTTtacatttcaaataaaatggctcaattaa--------atttgcatttttctcgaATAGGAATTTGGAATTCGTAGAAATTTTCGGTTAAAAACTGATCAG--AGATTTACACTcgaaaaatcagcaaaattgaaatcttaTTTTCACAAGTGGGTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   478303 132 -  4500979 -----TGTTTTCggtt------------caaaaa----------------tgggaaaaacaT---ACAAATAAAGTTAGAATTTAAGATGGGTGTGGTTAGTTGTACAATAACATTTGCATATTTCTC-------------------------CCTTCTTgccaaaatttgttttg------ttgcATTT--------------------------------CAAGTG---GTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1755241 123 +  4147112 GGATAGTTCCTCCGTTCTTT--------CAAGA-------------------TGAAAAACGTTCCGCAAA-AACGCT---ACTTTACGTGA------TAAACTCTAGAATGAAATTCATACATT------------------------------------GTTGGAATTGAATTAGTAAGAATCACGCTT-----------------------------TGCCAT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  525678 193 -   823664 I
e caeSp111.Scaffold629   591574 112 - 33334924 I

a score=-48123.000000
s ce10.chrX             3327119 271 + 17718866 TTTTTGATAGC-------TTCA-----------AAAATAT---AAACGATGACGAATAGTTTTTA------TAGTGATATTGCCTTATT------------------------ATAAGTTAATATACCTAATAGTTATCAGCTTCAAGCATGATT---TTT--TTT----ATACTT-------------------CACATATTG---------------------------------T---------------GACGTATTA-------TAGGCTACGAAAATTGCAAATTGCTTGAGACTTCAATAGAACTGCAACGTCTCATT-------------TTTTGT-GAGTCTTTAAATAGTTCAAGTGTCT--ACAGTCC--------------------TTTGCGGTCTCAAGGAAAGAGTT----GAACACGACACGCACCGCC
s cb4.chrX              8412343 354 + 21540570 ---TTTTCGACAGAGAAgttca-----------aaactctg--aaaaaatcgtaAAGCACATTTTTTGGgctaact----tttttcatctttataatttctgaaacaatcgaaaaaaaacagta-attctttaaacagaattttttc-tataaat---atTGATTTAAA-AAACCTGAATAGTGAAACGATTTCCGATACATCGATACAATCTTTAatattgaaagttttgaaatccc---------------gggaacttt-------t--ttttcgaaaagcg-atttttttccagacttgAATCA---------TGTTTATT-------------CCGTCTCCAATGTTCAAATAGTTCAAGTGCCTAAACacttctcccaaaaaaaaagaac---ttggAATT----AGAATAGAGTTTGAGGAACGT-----------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   478435 193 -  4500979 ---TTTCTAAC----------------------AAACTATG------------------CAGTTT------TAACG----ATTTGTATC------------------------AAAACACA-------------------------------------CTTGAATTAGGTAAGCTTGAA----------------GATATATCA---------------------------------C---------------AAAGATTTA-------T--GCATCAAATAACC-AAGCTTTTCA----------------------GTGTATT-------------CCTTCT---ATGTACAAATAGTTCAAGTGC----ATATGTCT-----aaaaaaaGAAC---TTAACGGTCTGAAGAAGAGAGTTT---GAACGC-----------CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   591686 239 - 33334924 TTTTTGCTGAC-------TTCA---------------------ATGtgagatt---ttttggttt------caatg----TGTCAAATC------------------------GTTAAATCTTC-AAGTGACATTCTatgatttcct-----------ttt--ctt------atAT-------------------TATAATCCT---------------------------------c---------------gctgttttt-------t--ttttcaaaaagca-acATTCACCGAAG-------------------ATTAATTCGAAATAAAGCACTTCGATTAAACTTTCAAACAGTTCAAGTGT----TCATTCC------ACGAGAAAAACTAAACGGCGGtctgaagaaaagagtt----gaATCT-----------CC
i caeSp111.Scaffold629  I 112 C 0
s caePb3.Scfld02_0      1755364 271 +  4147112 ---TTATTGAA-------TTTAATCCATATCAGAGGCTTTATTATGTGAtgttgaatttcatttt------cagtg----tatTTCAGC------------------------A-TAAACAATC-AGCTTTCGTTCGAGAATTTCACATAGAAatcggttt--tttgga-aaattt-------------------tatacTTCA---------------------------------CCTTCTGTACATCTGGGCAGTTCttgacttcat--ttttc---------acattccaaaagt-------------------tttcatt-------------ttcaat---gtttctaaaTAGTTCAAGTgt----tcatttc------aagaaaaaaac--agtaacgGTCTGAAGAAAAGAGTT----GAATGT-----------CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  525678 193 -   823664 I

a score=190581.000000
s ce10.chrX             3327390 370 + 17718866 GGA---AAACTGTCACAGTAAATAGTAGAAACTGTCAATC-GGTGCGTGAGTCTT-CGC-AATTC-----GTTCGATCGTTTAATTGCCC-ATTATTATCCATCAAAATACAG--TGGC------TGCCATTGGAGGGCTGGAGCGGT----CTAG--TTCTGATATAATGAAA--GTAGGCTAAA-TGACACAACTTCTAG-ATTACTTGAGATATCGCTTTGCCCTCCGTTGATTCCATAACCCCCT----TTCT----TCTCCGTTCTATGACAAT--GCCT---CATTCTGTTTCTCCTCTCTTTCT-----CTC----------CGTGG---------------AAAGTCGAACGTCCGACCTAGTTTTAATTTTAATATGGAAACATTTCATGTATCATTTGCATCTAAATACCAATTTTCACT--TATTGCCCGTCCT-
s cb4.chrX              8412697 335 + 21540570 CGG---AAACTGTCACAGCAAATAGTAGAAACTGTCTGTTGGAGTCGT---CTTCTCACAAATACTTCCAATGCAACTGTCTAATTGCCTAACCATTATCCATCAAAACACAGAATGAC-TGTATTGCCATTGGAAGG--------GTAGGGCTAGTTTTCTGATATAGTAAAAATATAGGCTAGATTGGCACTAT---------------AGATACCCT-----------------CCCGGTCCACTTGTTATGCA-------------T---CCGAT--GCCT---CT--------------------------CTCG---------GAAAGGca-aaaggaagaaaagagaTGAACGTTCGACCTAG------ATTTAATATGGAAACATTTCATGTATCATTTGCATCTCAATACCAATTTTCACTTGTGTTGCCCTACCT-
i cb4.chrX              C 0 I 457
s caeRem4.Crem_Contig0   478628 364 -  4500979 CGGGAAAAACTGTCACAGCAAATAGTAGAAACTGTCAATCCGGTGCGTGAGTCTTTCAC-AATAC-----GTTCAACAGTCTAATTGCCC-ATCATTATCCATCAAAATACAG--TGGC------TGCCATTGGGGCG--------GT----TTAG--TTCTGATATAGTAAAA--GTAGGCTAAA-TGGCACTACTTCTAG-ATTACTTGAGATATCGTTTTCCGC-CTATTGATGCCTATCCCGCCTGTTATGTGTTCACTTGTTCTCT---CCAAT--GCCT---TTCTCtaccct-------tttctttttcctcg---------gTAGG---------------AGAGAAGAACGTTCGACCTAG------ATTTAATATGGAAACATTTGATGTATCATTTGCATCTCAATACCAATTTTCACT--TATTGCCCTACCT-
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold629   591925 350 - 33334924 GGA---AAACTGTCACTGCAAATAGTAGAAACTGTGAATC-GGTGCGTGAGTCTC-CAC-AATAC-----GTTCAACTGTCTAATTGCCC-ATCATTATTCATCAAAACACAG--TGAA------TGCCATTGGGAGG-------GGT----CTAG--TTCTGATAT------A--GTAGACTAAA-TGGCACTACTTTTAG-ATTACTTGAGATATCGTTTTT-----------TGCCTATTCCGCCTGtcatatt----tctcttctctatgACAAT--GCCT---TTTGcctccctttctctctctcttttccttcg---------gGAAG---------------AATGACGAACGTTCGACCTAG------ATTCAATATGGAAACATTTATTGTATCATTTGCATCTCAATACCagatttcact--ttttgtccTACCT-
i caeSp111.Scaffold629  C 0 I 23
s caePb3.Scfld02_0      1755635 368 +  4147112 GGA---AAACTGTCACAGCAAATAGTAGAAACTGTCAATC-GGTGCGTGAGTCTT-CAC-AATAC-----TTTTAACTGTCTAATTGCCC-GTCATTATCCATCAAAATACAG--TGGC-----TTGCCATTGGGACG-------AGT----CCAG--TTCTGATATAGTAAGA--GTAGACCGAA-TGGCACTACTTTTAG-ATTACTTGAGATATCGCTTTCTGC-CTGTTGATGCCTATTCCGCCTGCC-TCTT----CCTGTTCTCTATGACAAT--Gcctttattttcccttcttcctttcttttcttttcctc----------ggAAG---------------GATGACGAACGTTCGACCTAG------ATTTAATATGGAAACATTTATTGTATCATTTGCATCTCAATACCAATTTTCACT--TATTGCCCTACct-
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold18194  525871 362 -   823664 gaa---aaaccGTCACATATAATATCAGAAACTGTCAATC-CGTGCGTGAGTCTT-CAC-AATACT----AACCGACCGTCTAATTGCCC-GCCATTATCCATC-AAATACTG--TGGTATGGTCTGCCA----AACT-------ATT----CTAG--TTCTGATATAGTAAAA--GTTGGCTAAA-TGGCACTGCTTCTGGTATTACTTGAGATATCATCTTG------ACTGTTGTTTTGCCCTCACATCCTCCA-------------T-TGACAATAGGCCA---CCCATTCTCTT-----------------CTCGAATGATGGAGgaaggaagaaaagaaga--aatggAGAACGTTCGACCTAG------ATTTAATATGGAAACATTTCATGTATCATTTGCATCTGAATACAAAATTTCACT--TATCGGTCAgtctt
i caeJap4.Scaffold18194 I 193 C 0

a score=4518.000000
s ce10.chrX             3327760 31 + 17718866 GAAGTTTTCATTTCTCTGATACCGATTCCAT
s caeRem4.Crem_Contig0   479011 31 -  4500979 aactttttcatttcattgatACCGATACTGA
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold629   592298 31 - 33334924 AAGATTTCTCTTCCGTTGATACCGATACCAA
i caeSp111.Scaffold629  I 23 C 0
s caePb3.Scfld02_0      1756022 27 +  4147112 ----tTTCCATAGTTTTGATACCGATACTAA
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18194  526233 18 -   823664 ttgcttgtcttttctttt-------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8413032 457 + 21540570 I

a score=25234.000000
s ce10.chrX             3327791 65 + 17718866 -CGTTCTTATTTTAAATTTGTTCCGAAACAAACT--TCCATTTGCTTCTTTATGTTGTATCACTTGAT
s cb4.chrX              8413489 53 + 21540570 -CGTTC-TGTTTTAAATTTGTTCAGAAACGCAAA-------------TTTCGTCTTGTATCACTTGAT
i cb4.chrX              I 457 C 0
s caeRem4.Crem_Contig0   479042 67 -  4500979 -CGTTCTTGTTTTAAATTTGTTCCAAATCGTAGaaatcttccattttcttgGTGTTGTATCACTTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   592329 58 - 33334924 -TGTTCTTGTTTTAAATTTGTTCCGAAACATACT---------TCGATTCAGTTGTGTATCACTTGAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1756049 58 +  4147112 -TGTTCTTGTTTTAAATTTGTTCCGAAATGAACT---------TCCTCTGTATGTTGTATCACTTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  526251 55 -   823664 cttttcttgtctt-gtcttgttctgccttgtcct------------gccctgccttgccGTATTTGAT
i caeJap4.Scaffold18194 C 0 I 116

a score=13003.000000
s ce10.chrX             3327856 60 + 17718866 ACGACC----TTCAGGCGATATTT--------------TAGTTGGATTAGA--AGCAATCGCAAAATG------------------AACACGAACACA
s cb4.chrX              8413542 93 + 21540570 ACGACC----TTCAAA-GGAATTCTTAGGAAGTAGTAGTAGTTGGATTAATAGAGTGGACACgggaaaggaaaagaaaaaacgattaGGATGAACATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479109 57 -  4500979 GCGAcc----ttcaaa-aacatttt----------tagtagTTGAATTAGT--AGTGGACACT------------------------AGATGaacata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   592387 65 - 33334924 ACGACC----TTCAAA-GACATTTTTG--------TAGTAGTTGGATTAGT--AGTGGACGGAAGATG------------------AACAagaacatt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1756107 69 +  4147112 ACGACCGACATTCAAA-GACATTT-----------------TTGGATTGGT--AGTGGacggaagatg---------aagatgaacaagaagaacata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526306 116 -   823664 I

a score=111872.000000
s ce10.chrX             3327916 148 + 17718866 C-TTTTTT--------CCCATGTACTAATCCGGGAGGGCACCTTTCTCACTTCT--TCTTTCCT-------------TTTCCGTCT-CACATTATTTGCCCAACATTCTGAAGTACATCTACTTG--------------------------TGGACGCCTTTTTCTTAAGCGCAACCCTAAACATTTCGCACTGGTTT--G
s cb4.chrX              8413635 168 + 21540570 CACTTTTTTCTGGCTGGTCATGTACTAATCC--GAAGGCACCTTTCtcacttcttcctcttcttcttcttatttccaTTCTCGTCG-TA---TATTTGTCAAGCGTTCTGAAGTACAACTACTTG--------------------------TGGACGCC-TCTTCTTAAGCGCAACTCTAAACATTTCGCACTGGTTTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479166 141 -  4500979 caattttt------------tgtactaaTCC---AGGGCACctttctcacttcttcttcttcgtt------------ttctcgtCT-TA---TATTTGTTGAACGTTCTGAAGTACACCTACTTG--------------------------TGGACGCC-TTTTCTTAAGCGCAACCCTAAACATTTCGCACAGGTTT--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   592452 155 - 33334924 c-tttttt--------tacatGTACTAATCC---GGGGCACctttctcacttcttctccttctcttttttccttt--ttctcgtcTGTA---TATTTGCTGAACGTTCTGAAGTACACCTACTTG--------------------------TGGACGCC-TTTTCTTAAGCGCAACCCTAAACATTTCGCACTGGTTT--A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1756176 153 +  4147112 cacttttt--------tgcatgtactaatCC---GGGGCACCTTTCtcacttct--tcctttttctacCCCCTTT--TTCTCGTCT-TA---TATTTGCTGAACGTTCTGAAGTACACCTACTTG--------------------------TGGACGCC-TTTTCTTAAGCGCAACCCTAAACATTTCGCACTGGTTT--G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  526422 160 -   823664 --tttctttccga---tGCATGTACTAATCC---GGGACACC-TTCTCAATTCT-----------------------CGTGCGATT-T----TATTTGCCAAACGTTCTGAAGTACACCTACttggacggacggacggacggacacacggacggacgC--GTTTCTTAAGCGCAACCCTAAACATTGCGCCCTGGTTC--A
i caeJap4.Scaffold18194 I 116 I 25

a score=12522.000000
s ce10.chrX             3328064 33 + 17718866 GTTTATGGACATGTAGAAAAAA-CCGATAAACCC
s cb4.chrX              8413803 32 + 21540570 TTTTATGGACAAGT--GAAGACACCGATAAACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479307 26 -  4500979 GTTTATGGAC-------AAGAC-CCGATAAAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   592607 26 - 33334924 GTTTATGGAC-------AAGGC-CCGATAAACCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1756329 25 +  4147112 GTTTATGGAC-------AAGAC-CCGATAAA-CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526582 25 -   823664 I

a score=3158.000000
s ce10.chrX             3328097 134 + 17718866 GC--GACGCGTTCA---GCGCCCTCC-CCAGGCATTTGTTATACTGATCGTGGCAGC--------TGAACAACAGCTGTGG-----------------ATAGATTTCTCTACAT--GTACTTTTTT----CGTTTTCGT-----------C------------------GAATTGTTGGCACCTGTGG-----------------TGAAAATCTATG
s cb4.chrX              8413835 171 + 21540570 CCAGGACGTGTTCGGATTTGTTTCCC-TCAGACATTTGTTATA------GTCGCAGCTGTTGTGTTGTATAACAGCTGCAA-------------------------------------AGCCTTTTTCTTAACTTTATTATGTTTGGGTCC--GAAATGACCTTCAACACATTTTCATGCACCTGTGGTCCACAAGCAGctgttcattttatttttg
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   479333 126 -  4500979 ----GACGTGTTCA---------TCG-CCAGACATTTGTTATA------TTGGCAGC--------TGAACAACAGCTGcaggaggaaaagaaaaaagggtgGATATCTGTACAT--GTAAACCCTCGcttaactttttt-----------t--gaaa------------------------------------------------atgttatgtttG
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold629   592633 139 - 33334924 ----GACGTGTTCA---------TCGTTCAGCCATTTGTTATA------ATGCCAGC--------TGAACAACAGCTGCAA-----------GATTGGGTGGATTTCTGTACAC------CCTTTC----AAGTGTTTT-----------T--CTGTCGGCCttcatcaaaattcattGCACCTGTGA-----------------TGGGTATCTTtg
i caeSp111.Scaffold629  C 0 I 351
s caePb3.Scfld02_0      1756354 122 +  4147112 ----GACGTGTTCA---------TCGTTCAGGCATTTGTTATA------TTGGCAGC--------TGAACAACAGCTGCAA-----------GATTGGGTGAATTTCTATAGATCTGTGGCCTTTC----AGGTTTTTT-----------CGGTTGCCGGCTGCCGACAGAATTT------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  526607 146 -   823664 TC--GTCTCGTCCT---ATCCCATCC-GCAGACATTTGTTATT------ATGGCAGC--------TGAACAACAGCTGTGG------------------TGGATTTTCGTACCcgcacaacttttttttggccttcatt-----------t-----tcgGCTTC-----GATTGAGTGGCACCTGTGAAAGGGCA----------AAAATATATT--
i caeJap4.Scaffold18194 I 25 C 0

a score=4100.000000
s ce10.chrX             3328231 11 + 17718866 GACTACAGCTG
s cb4.chrX              8414023  9 + 21540570 --ttacagttt
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   479476  9 -  4500979 --CTGCAGCTG
i caeRem4.Crem_Contig0  I 17 C 0
s caePb3.Scfld02_0      1756476 10 +  4147112 -ACTGCACCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  526753 11 -   823664 GGCTGCAGCTG
i caeJap4.Scaffold18194 C 0 I 613
e caeSp111.Scaffold629   592772 351 - 33334924 I

a score=273.000000
s ce10.chrX             3328242 1 + 17718866 T
s cb4.chrX              8414032 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479485 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 230
e caePb3.Scfld02_0      1756486 0 +  4147112 C
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I

a score=9.000000
s ce10.chrX             3328243 15 + 17718866 TAGCTC-------GGTTTTGAA
s cb4.chrX              8414033 19 + 21540570 ---ttCCCATTCTGATTGTGTA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1756486  9 +  4147112 -------------GATTTTGTA
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-150.000000
s ce10.chrX             3328258  70 + 17718866 TATAGATCAAATAAC---------------------------------GCCAAAAAATTGA---AAAAATCCTAAAT---TTGATTATTCTTTGATGCTCCATAGAAAA
s cb4.chrX              8414052 108 + 21540570 T-TACATCTAATAACTGATGAAAATCTTAAGCTTTTCAAGTCGTGCTGACtagaaaatttgtttgaaatttcaaaatatcttaATTCGTCCTCAAAAAtctattggaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1756495  27 +  4147112 I
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-5925.000000
s ce10.chrX             3328328 136 + 17718866 TTCTGTTCAAACAGTATTTTGAAAATT----------ATATT-------------ACTATCGGCAAATTGTGTGTTCTGTTCATTTGAAAACGCTT--AAATTG----TCATGATTACGGT--GGAAAAACAACCAAACAGAGTAAAACTATTCAAACA-TTTTttga
s cb4.chrX              8414160 133 + 21540570 ---tttttaa--gaaatataATAAACTTGACATTACGTTTCtagagaaaataataattAGTGACGATTGGT-----TTGTT-GTTTGTGAACGTCTGAAAATAGCATATTACGTGCACATC----AAAAAT-------cttcgt-------------catttttttga
i cb4.chrX              C 0 I 54
s caePb3.Scfld02_0      1756522 127 +  4147112 TCTTAttcaa--attatttaaaaaact---------gattct-------------aTTTTTGCCATCTGGCg----ctatt-attttttcaagc----aaaCGGCGCTCCACAGaaacattccagaaaaataa--aaatggcgtgaaa------aaaCAAGTGCTTGA
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-399.000000
s ce10.chrX             3328464 45 + 17718866 aaaatttttattgacagtcacaaaatggcaattactgagtttttg
s caePb3.Scfld02_0      1756649 28 +  4147112 AAAGTAGTCACTGATA-------------AATTCGTGAAGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e cb4.chrX              8414293 54 + 21540570 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-7253.000000
s ce10.chrX             3328509 242 + 17718866 ccactTTAAAAAAAACAGTCCCTACAGTGTTTGAATATTAATATTTGTTAA---CCATAAATTTTGAAAGAATTTT----TTTCCAAAAATgattttcaaaaaagtggcaaaaaagtggtaaccactttttaaaacaaaatttaagaattcaaaaaagttttgaatagcgttactatgatatttgaatatcgtggcaccataaaagtggtttttaacaatttttcccactggaact----actctacAACAGA
s cb4.chrX              8414347 214 + 21540570 caatattcaaaaaaaatattttaaaaatattt---tatt-ctaATTACTGAGTGCCATAaagttttaaagatttttgcgGTTTAGGTTAATGTTTAATTAAATAcagtttctcaatttttaattattcccttcaa-aaaatttcgactttcacatttttttttaat----tctacaaaatagacaaaaatc--------------------tTGAACAATTCTTT------GAAGT----ACCATAAAATCGA
i cb4.chrX              I 54 I 50
s caePb3.Scfld02_0      1756677 152 +  4147112 ---------AAATGACGAATTTGA------------------AGTTGCAAAACAC----AAGTTTGAagtgtttttgtgatttcaagTAGGATTTTTgtaagaaaa------------caaattat----------gaaaattcaattttcgtgtT--------------------GAATAGTGGAAA------------------------TTGGTATTTCTTCC----GGAATTTTCGACTATAAAACCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-712.000000
s ce10.chrX             3328751 33 + 17718866 TACGTAAACCGACAACCCAACCCAAGTTATAAC
s caePb3.Scfld02_0      1756829 28 +  4147112 GTCAGAAAATAACATTCTGtctgtattt-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e cb4.chrX              8414561 50 + 21540570 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-11172.000000
s ce10.chrX             3328784 253 + 17718866 AAATCTAACGTTA-----------------TTATAAAATTCAAAAAATAGGAAAAAAATACAAATTACGAATTT-CTATTGTTCAGTGCTTTTGTCAAAAAGTGA------TTTT-TAACAGTTTTTTTTACTGAA------TTTCCCCACTG----CACTACTCCACCTCTGTTTGATCTGAATCAGAAATTGTACTGGAATTTTTTTTTTGGAAAATTTCAAGTTTCAACTTTGTAAAACGCAAATGATGCGACTCAATTAACTGTGTATGGAATAGATTTTTCAT
s cb4.chrX              8414611 243 + 21540570 AAATCAAATATTAATCAACTGCCAAAACGCTTATAATATTATAATga------------acaaattatcagttgacaatttttaaatatcttccacaggaactcagaaaatttttctcaaagtttaaattttgtGGGCCCCTCTTATACGGTGTTTCCATTGATGGAAATAT------TATGAATTTGAGAACgcatcttcatttttttcct----ttcttctctCTTCATATT----------------------CCCACTGTTTT-GTatagaaaatcttttttag
i cb4.chrX              I 50 I 69
s caePb3.Scfld02_0      1756857 164 +  4147112 ----------ttta----------------tttcgatcTTAT---------------------------AGCTG--AAGTATAAAGCAGTTTTCAGAGCTACTAATGCAATTTCT-ttacactttttattttttga------ctt---caGTG----CACTCCCGG--------------TTAATTT---------CCGTCAGTTTTCCACC----CATTTCTCTTTGAA---------------------------CCATTGAATG-ATCTTGAATACGTCCTTAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-1037.000000
s ce10.chrX             3329037 62 + 17718866 AATTGTCCTACTTTTTAAACAAATTTACAAGTATATTAGAAAAAATGTTCAAACCGATTCAG
s caePb3.Scfld02_0      1757021 20 +  4147112 AGTTGTTC---------------------AGTTCACTAAAA---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e cb4.chrX              8414854 69 + 21540570 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-1700.000000
s ce10.chrX             3329099 21 + 17718866 TAATTATTCACTTTTCTCCAT--
s cb4.chrX              8414923 18 + 21540570 TAATAGTTCACTAAACTG-----
i cb4.chrX              I 69 C 0
s caePb3.Scfld02_0      1757041  8 +  4147112 ---------------CTGCCGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I
e caeRem4.Crem_Contig0   479486 230 -  4500979 I

a score=-1110.000000
s ce10.chrX             3329120 10 + 17718866 -TCATCCGGT----C
s cb4.chrX              8414941 10 + 21540570 ACATTCCGtc-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479716  9 -  4500979 -TCGCCCGGT-----
i caeRem4.Crem_Contig0  I 230 C 0
s caePb3.Scfld02_0      1757049 13 +  4147112 -CCGTCCGGTAGCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I
e caeSp111.Scaffold629   592772 351 - 33334924 I

a score=-1658.000000
s ce10.chrX             3329130 115 + 17718866 ----ATCG---GTTCAATTCTCGGA----------AAAAAC-------AACCGCCG--TAAATAC--TTTACGTCTTCATTTCAAACTGTCCAA---------ATTCATTTATTC--AGTTACACAGT------------GAAACGTCGTGCACTAACCGAAACCT
s cb4.chrX              8414951 120 + 21540570 aagaattgagaaaaaagttttcgggaaaacccagaaaaaaa--------acggcgg--CAGTTTT---GTACTTATTCATTCAGAACGGTT------------TTTTCCCGAACC--TCTTGCATTTT---GTTC--------ACATCGTGCACCT--------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   479725 137 -  4500979 AGCAATTG---GAATggttttcggg----------aaaaaa--------acgGTGA--CAGCTGTA-CGTACTTCTCAACAGAAAACTGTCTAAGTTCATCCGTTTTCTCCATTCAGTGTTACGCGAT---CTTCTCAATCGAACGTCGTGCACTG--CGACAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   593123 126 - 33334924 ----atca---gttcatttttcaat----------agcAACATTTTTGAACGGTAG--GAAAATTACTGTGCTTCATCACAG---ACCGACCAAT----------ACATTTGTTCTGTGTTACGCGAT---CTTTTCGATAGAACGTCGTGCACTA-----AGACC
i caeSp111.Scaffold629  I 351 C 0
s caePb3.Scfld02_0      1757062 138 +  4147112 ----ATCA---AAATAGTTTTCGGG----------AAAAAC--------GCGACAGCTGTACTTTCTCTTCCGTCTTCACAGAAAACTGTCCAACTTCATTTCAATCGTTCATTCAGTGTTACACGATCTCCTCTCCAATTGAATGTCGTGCACTA---Agagact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  526764 613 -   823664 I

a score=193763.000000
s ce10.chrX             3329245 777 + 17718866  
s cb4.chrX              8415071 712 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   479862 823 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 93
s caeSp111.Scaffold629   593249 803 - 33334924  
i caeSp111.Scaffold629  C 0 I 167
s caePb3.Scfld02_0      1757200 793 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  527377 804 -   823664  
i caeJap4.Scaffold18194 I 613 C 0

a score=91.000000
s ce10.chrX             3330022 1 + 17718866 T
s caeJap4.Scaffold18194  528181 1 -   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1757993 1 +  4147112 I
e cb4.chrX              8415783 1 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685 93 -  4500979 I

a score=-47.000000
s ce10.chrX             3330023 7 + 17718866 TCGTGTG
s cb4.chrX              8415784 7 + 21540570 TGGGGTG
i cb4.chrX              I 1 I 360
s caePb3.Scfld02_0      1757994 7 +  4147112 taCCATG
i caePb3.Scfld02_0      I 1 I 2
s caeJap4.Scaffold18194  528182 7 -   823664 ttttgtc
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685 93 -  4500979 I

a score=140.000000
s ce10.chrX             3330030 27 + 17718866 TTAACATGAGAACAAAGTTTTTGTACG
s caePb3.Scfld02_0      1758003 21 +  4147112 TTAATGTAAGTAGA---CTTTGGT---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  528189 20 -   823664 ttaatGTAGG-------TATTTGTATG
i caeJap4.Scaffold18194 C 0 I 511
e cb4.chrX              8415791 360 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685 93 -  4500979 I

a score=-7021.000000
s ce10.chrX             3330057 702 + 17718866  
s caePb3.Scfld02_0      1758024 315 +  4147112  
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194  528209 511 -   823664 I
e cb4.chrX              8415791 360 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685  93 -  4500979 I

a score=0.000000
s ce10.chrX             3330759 44 + 17718866 caaaatCTTAAATGAGCTTAAATAGTTTCAGAATAAAACATGTT
e caePb3.Scfld02_0      1758339 27 +  4147112 I
e caeJap4.Scaffold18194  528209 511 -   823664 I
e cb4.chrX              8415791 360 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685 93 -  4500979 I

a score=232.000000
s ce10.chrX             3330803 58 + 17718866 TTTCAAAGTTTTCACTGATTTGTTTTTTCCTCTTCCTCCTCACATATTTCACATATTT
s caePb3.Scfld02_0      1758366 57 +  4147112 TTTTAATTATCTGACTCCAatattctattctttttttcttctcatttccttgAAACT-
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194  528209 511 -   823664 I
e cb4.chrX              8415791 360 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I
e caeRem4.Crem_Contig0   480685 93 -  4500979 I

a score=742.000000
s ce10.chrX             3330861 6 + 17718866 CAATGT
s caeRem4.Crem_Contig0   480778 6 -  4500979 CATTAT
i caeRem4.Crem_Contig0  I 93 C 0
s caePb3.Scfld02_0      1758423 5 +  4147112 -AATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528209 511 -   823664 I
e cb4.chrX              8415791 360 + 21540570 I
e caeSp111.Scaffold629   594052 167 - 33334924 I

a score=28406.000000
s ce10.chrX             3330867 349 + 17718866 TTGTTCCAATCGTATC---TACTATTCCTTTTGAACA----CACTTTACGGACAA-CTATCTTTGTTGAATCATGTTTC---------CAAC----AAAAGTTT-----TCAATGCTACTTTTGCACAAAGAA------ACTGAAAAATAAACTAAAACGGACAGACAACATTTTTGTTTTAGTTTTTT-----GTAGTAACGAGTAGTCTTCATTT------TC----------CCAAG---------------TTTTCCGCATAGATTAGCTTCG-TTTTCG----------ATAATGAAGTAGAGG--TGTTTAAAGATGG------------GGCGTGA---AGAATGTGATAATGCGTATTAGCATGTAAAGCATTCTGTCC------GCCCTTTAACACTTTTCCACCCATTTTTTGTTCATTTTTAAACAAGAGTTCTGCTCGG
s caeRem4.Crem_Contig0   480784 387 -  4500979 TTGTTCCAGTCGTATC-TATAATG------CAGAATACATATATTTTACGGAACA-CCA-CCCCGTTGAATCATGTTTCTTTAGTTTTCcac----aaaaacatgaaagtt--tttttgtgcAGCACAATa--------gatgagaaagaaaagaagacgaa-----aactTTATTGTTCTAACATTCT--------CTTACAAGTTggcttcattt------tcatctttc---cCATATTTTAAATGTCT---GCCCATATATAGATTAGCTTCg-ttttcacatattttct-------ctcgaaca--tttttgatagtGAAGTTTGTGTGTATGTGTGA---AAAGCGTAATAATGCGTATTAGTGGGTTAAGCAGTCAgaccgttttctttttttcacacattc-gattttttttctaactcacCTAAATGAGAGT--CATATCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   594219 375 - 33334924 TTGTTCCAATTGTATTGTCAAATActccttcgaaaaa--tatattttacGGAACA-CCA-CCCTGCTGAATCATGTTTCTAcagttttcatc----aaaaacat-----cT--TGTTACTTGAGCACAAAAGAACTGCTGGCAAGAA--AATAGACAACAAA-----AACGTCTTTGTTCTAGTATTCT--------------------CTTCAtgtct----tcattttt----ccacgTTTTAAACAT-----TGTTTCGCATAGATTAGCCTCA-TTTTCACACCTTACTTGTCATAATTTAGACACTTCTCTGATAGTGA--------TGGAGGTTTGA---GAAGCGTAGTAATGCGCATTAGCAGGTTAAGCAGACAGTTC------CCATTTGTAcgcattt---cttctcttctgtcCAACCTCATTGAAAAGAGTTCAGGAC
i caeSp111.Scaffold629  I 167 C 0
s caePb3.Scfld02_0      1758428 402 +  4147112 ---TTCCGGTCGTATCATCCAATTTTCCgtcggaaaa---atttcatgtggaACACCCA-CCCTgctgaatcatttttcgttaGTTTTCAGCCAAAGAAAACAT-----CG--TATTAGTTGAGCACAATA--------Ggcaagaa-gaattgaagacaaa-----aac-tttttgttctaATATTCTATTTACATTTTCCCATTTGgcttcatttctcttctcattttctgaatgaagTTTCAGtcgtctcaattttttatataGATTAGCctcatttttcacacttttcgtGTTATAATTTGAACA-TGCTTTGATAGTGA--------GGAGTGTGCGAAGGAGGGCGTAATAATGCGCATTAGTGGGTTAAGCAGGCACCTC---TTTTCATTATTacgcattt---tttcttttcagaatactCCCAATTAA-----TTTGCTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528209 511 -   823664 I
e cb4.chrX              8415791 360 + 21540570 I

a score=6326.000000
s ce10.chrX             3331216 46 + 17718866 ACACGTA-CCGAAGCAGTTCGATTTTTTTCCCGAGAGATGAAGAATT
s caeRem4.Crem_Contig0   481171 38 -  4500979 ACACGTA-CCGA-----TTCAATGCCTTCAACGCTCGA--AAAACT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   594594 40 - 33334924 ACACGTG-TCGA-----TTCAATGTCCTTAGCGATTGAC-AAAAATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1758830 40 +  4147112 TCACGTACCCGA-----TTCAATGTCCTTAGCGCTTGA--AAAAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  528720 27 -   823664 ACACGTA-TTGA-----ATCAATAC------------A--AAATATT
i caeJap4.Scaffold18194 I 511 C 0
e cb4.chrX              8415791 360 + 21540570 I

a score=150905.000000
s ce10.chrX             3331262 253 + 17718866 CTTACAAATG-TTGGCAGAAGCACAAATAGAGACATACATTATGGC---AAAAATTGAG-TCA--------------GTGTGAGGAGACAAGTGAGAGGAAATAGAGGTAGAGAGAG----AAAGTGGTG---------------AAATGTGAAAGCAAGC---------------ACACATACGTGTGCGCAGTATCGGTCC-----ACAGTG----CAA-GCGGCTAGTCCTTTTTCCGGTTGC----------CGAAATGCGATCTTCC-----CTGATCTTTTTC-----------------ACCGA------GCGGGCGTCATGCCATGTTAACCCG-AATTACTGACGA
s cb4.chrX              8416151 311 + 21540570 CCTACAGGTG-TTAGCAGAAGCACAA------ACACACATTAAGGC---AAAATTTGAG-CTCCACAGTAAGTGATTGTAGAGA------AATAGGAGGCTa---aggaatggaaaa----aaagtagGGCGAGCAACGTAGGGAAATTGTGAAAGCAAGCAGCACACACATACAAACACATACGTGTGCGC-GTATCGGTCCACAAAACAGT-----CAACGCGGCTAGTCCTTTTTCCGGTTATGTGTTTGCCGCGAAATGTGATCTTCC-----Ctgatctttttc----ttctatcgCCGAGACGGACAACGTGAAGGGGACCCGCCATGTTAACCCG-AGTTACTG----
i cb4.chrX              I 360 C 0
s caeRem4.Crem_Contig0   481209 226 -  4500979 CTTACAAATG-TTGGCAGAAGCACAAACAGAGACATACATTATGGC---AAAAATTGAG-CCA--------------GTGGAAG------AGTGAGTGTTT-----GGGAGGGCAGA----AAAGTAGGG---------------AAATGTGAAAGCAAGC---------------ACACATACGTGTGCGC-GTATCGGTCC-----ACAGT-----CAA-GCGGCTAGTCCTTTTTCCGGTTGC----------CGAAATGTGATCTTCC-----CTGATCTTTTTT----C------------ACGGA----------------CGCCATGTTAACCCG-AATTACT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   594634 221 - 33334924 CTTACAAATG-TTGGCAGAAGCACAAACAGAGACCTACATTATggcgaaaaaaagtgagccCA--------------Gtgag------------------------gaaagagagaaatggagagTAGGA---------------AAATGTGAAAGCGAGC---------------ACACATACGTGTGCGC-GTATCGGTCC-----ACAGT-----CAA-GCGGCTAGTCCTTTTTCCGGTTGC----------CGAAATGTGATCTTCT-----CTGATCTTTTTC----T------------ACGGA----------------CGCCATGTTAACCCG-AATTACT-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1758870 215 +  4147112 CTTACAAATGTTTGGCAGAAGCACAAACAGTGACATACATTATGGC---AAAAATTGAG-CCA--------------GTGgg------------------------gggagagaaaa----agagtaggA---------------AAATGTGAAAGCAAGC---------------ACACATACGTGTGCGC-GTATCGGTCC-----ACAGT-----CAA-GCGGCTAGTCCTTTTTCCGGTTGC----------CGAAATGCGATCTTCC-----CTGATCTTTTTC----C------------ACGGA----------------CGCCATGTTAACCCGAAATTAGT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  528747 212 -   823664 CTTACAAATG-ATGGCAGAAGCACAAACAGAG----ACATTATGGA---AAA-----TG-CGA--------------GTGAG---------------------------------AA----AGGGGGGCG---------------AAATGTGAAAGCGAGC---------------ACACAAACGTGTGCAC-GTGTCGGCCC-------AGTGGTGACGG-ACGGCCAGTCCTTTTTCCGGTTGC----------CGAAATGCGATCTCGCCTTGGCTGATCCTTTTCGCCGT------------GCCGA----------------CGCCATGTTAACCCA-AATTGCCGACAA
i caeJap4.Scaffold18194 C 0 I 2364

a score=32215.000000
s ce10.chrX             3331515 155 + 17718866 GATGAAAGTGTAGTGTGG---CGTGTGAGTTTACAT-----------------------GTGCTCATTGAGCTTTGC-------TTCTT---CATTG-GTAACCGTTCACACAAACAGTACCGCAACTTTGTTTTACGACTCTGTTTGAATTTGAGATTTGAAT--------TCCTATATTGATGTAGGTCAGGTGACAA
s cb4.chrX              8416462 125 + 21540570 --TGGCAGCAAAATTTTG-----------------------------------------TTGCTCATTGAGCTCTTcgccattttttctttaagtTGAGAAACCGTTC--------------------------------ATTGTTTATGTTTGAGATTTTCACCAGTTCTTTCTTTCTGTGATGTAGGTCAGGTGGCAA
i cb4.chrX              C 0 I 248
s caeRem4.Crem_Contig0   481435 170 -  4500979 --TGGGGGCGGGGTCTTGAAGCGTGTAAATTTACGTGAGTG-TGTGAGAGAGGAGCACTGTGCTCATTGAGCtcttc-------tttcc---------aaaaccgttcCGACAAACActtttc-aactctttttttc--gattgtttatatttgagattttgaa--------ttcaaCGTTGATGTAGGTCAGGTGACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   594855 150 - 33334924 --TGG----------------CGTGTGAGTTTATGTGT----TGGAAGCGAAGAGCACTCTGCTCATTGAGCTCTTC-------TTCCC---------AAAACCGTTCTGgcaaacagttttt--tttacttttttc--cattgtttATATTTGGGATTTCAAA--------ACCAAGTTTGATGCACGTCAGATGGCAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1759085 155 +  4147112 --TGG----------------CGTGTGAGTATACGTGTGCCCTGTGAG-GTGGAGCACTGTGCTCATTGagctcttc-------ttctc---------aaaaccgTTCTAACAAACacttttcaaccttttttttac--ttttgtttaTATTTGGGATTGTGAA--------TCCTAGTTTGATGTAGGTCAGGTGACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I

a score=2026.000000
s ce10.chrX             3331670 13 + 17718866 TACGAAAGTTTCT
s caeRem4.Crem_Contig0   481605 13 -  4500979 TTCACAAGTTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   595005 13 - 33334924 TTCACAAGTTTTT
i caeSp111.Scaffold629  C 0 I 97
s caePb3.Scfld02_0      1759240  8 +  4147112 -----ACGTTTTA
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I

a score=1066.000000
s ce10.chrX             3331683 12 + 17718866 ATTTTTCTATGT
s caeRem4.Crem_Contig0   481618 12 -  4500979 ACTTGCTTCTGT
i caeRem4.Crem_Contig0  C 0 I 124
s caePb3.Scfld02_0      1759254 12 +  4147112 atttttttctcc
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I
e caeSp111.Scaffold629   595018 97 - 33334924 I

a score=-2119.000000
s ce10.chrX             3331695 361 + 17718866 CAAGTTTAGAGTTTTGAATTTTTTGTTTGTTCGATGCTTCCGAGTGAATTTCCTTTTGAGAATCAGTGAAAAAGTCGTATATTTTTTTACTGTGATAAAACAATTTCGACAAAATTTTGGAAAATATTTTATTTTGTTTCAAAAAGTTGCAATAACTGAGTATTACCACTTTTTGCGAAATCCGTAGCACTGTCGAATGTTCGAATCCCTACAATCTTTGAATACTAGTATTTGAAACGTACATAAGTTGACAACAAAATTCAATGCAACATTTTTTTGATCGACTCCTTCCaaaaaattaactataaaaaaataaatataaaaaCTGGCCTACTCCACTTTTAAGTTTTCAATAGACAAA
s caePb3.Scfld02_0      1759266 221 +  4147112 aagtttttctgttaaaaGTTGTTTGCCT---------CTCCAAGctaaacattttctgaatacCTGc----cagttg-aaattttt---------cggaacaattttttccaaatt-------attttcgaattccagtcaaaaa--------aatcaagt--------tttttggataa--------------aaatgattaaatttttagaat---------------ttgcAATTGTTCaggagtt----------------------ttttgttgttcaac------------------------AAAATAAGGGTG-------------------TCAAAGTTtaatatgaacaaa
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I
e caeSp111.Scaffold629   595018  97 - 33334924 I
e caeRem4.Crem_Contig0   481630 124 -  4500979 I

a score=0.000000
s ce10.chrX             3332056 97 + 17718866 TATACATAATTTTATTGGAAAACTGCGAAAAATCATTGAAAAAttaaaggcgcactaccccttgtgcaatgaataagcatgtgtcgtgtcaaaaccg
e caePb3.Scfld02_0      1759487 51 +  4147112 I
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I
e caeSp111.Scaffold629   595018 97 - 33334924 I
e caeRem4.Crem_Contig0   481630 124 -  4500979 I

a score=-1041.000000
s ce10.chrX             3332153 95 + 17718866 tgtacttacttttagcgtaataaatcacaaaattgatagtctaggtaataTGAACCGTGCAAGTTGAGCAATGATGGTGCAAGACTAATCGAAAA
s caePb3.Scfld02_0      1759538 38 +  4147112 tgaattttttttt-----------tcacaaaatt-----------------------tgaaaattgaccttt-----------------------
i caePb3.Scfld02_0      I 51 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I
e caeSp111.Scaffold629   595018 97 - 33334924 I
e caeRem4.Crem_Contig0   481630 124 -  4500979 I

a score=-1064.000000
s ce10.chrX             3332248 39 + 17718866 -------------------------------ACTATATAATTTATTTTCTATGATTTTACTTCACAATTT
s caeSp111.Scaffold629   595115 36 - 33334924 -------------------------------ACTATAtattctgttct---tttttttacctttcttctc
i caeSp111.Scaffold629  I 97 C 0
s caePb3.Scfld02_0      1759576 65 +  4147112 tttttaattttttttttcagatgccatttttcccatattttccCTACT---TGGTTTTATC--CCCGCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I
e caeRem4.Crem_Contig0   481630 124 -  4500979 I

a score=-2637.000000
s ce10.chrX             3332287 168 + 17718866 ----TTATCC--------ACCTTTCCATCTCATC-CACCACGTTCCCCTTTTTTTCGAACAATGGGTAATGAATCTTAACAGT--------------------TTTTTCTTTTTCTTCGAAATCTGTGAATGTGTGTCATTTAATGTTTCCTTCCGTTGTAATCAGAAGAAAAAAGTCT-ACAGTTGTGGAATATGCATATG--
s caeRem4.Crem_Contig0   481754 157 -  4500979 TTGTTTATCTTCTGCTTAGATCTTCCAATTCTCTACG-------------TTTTCTGAACAATGGCTAATGAATCAAAAAGGTGAATTAGATTTACATTA---CATTTTTCTCCCTTCAAAAACT------------------GTATGTACTCAATGTTCCTCACAAAAAAGGCGTTTG-------------ACTACATATaat
i caeRem4.Crem_Contig0  I 124 I 1
s caeSp111.Scaffold629   595151 141 - 33334924 ----ttatctt-------aatttttcatctcGTT-CA-------------CTCATTCAACAATAGCTAATGAATCTAACAAAT------AAT---CATTAGCCTACTTTCCTTGAATCTA------------------------TGTTTCTTCTAGTTGTCactaaaaaacagaagaagaaaaaa----gagaatgcaTATAA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1759641 147 +  4147112 ----TAATCTC-------AGAATCTCAGttcgtt-ca-------------tttttcgaacaataGCTAATAGATCAGACAAATTGACGACAC---CATTA--CTTTTTTCCTTCACCCAAAAA--------------------GTGTCTCCCCAATTCGCCACCAGAAAAAAGAGGCAG-GATAT----GAAAACACATAT-A-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8416587 248 + 21540570 I

a score=45796.000000
s ce10.chrX             3332455 195 + 17718866 AAAA--GGGGAATAATTAACAGTGTGGACAG----TGTGGTGTAATTGCATA-CCGAGTCACTTGCGGACCACCGTGTCTGACCTTTCTATTCAC----CATTT-----TTTCGCTGCCGTCCTCCTGC---CCAACAATCGTGTCGTGTTGTGTA--------GATTTCGTAAGATTTTATATTTTTTTTACTAAGGATTTTTTTGAAT--A---TGGGTTAACAG
s cb4.chrX              8416835 177 + 21540570 AAAC--AAGGAATAATTAACCAA------CGTCGTCCCGGTTTAATTGCATA-CCAAGTGACTTGCGGACCACCGTGTCTGACCTTTCCATTCATAtacctctt-----tttctctgtttc-----------------------------cgTGTGTTTGCAATGATTTCCGT----TTCTTGCCATTTCTTATGAGGTTTTTTGTTGAT--GTT-TGGGTGATCAG
i cb4.chrX              I 248 I 16
s caeRem4.Crem_Contig0   481912 184 -  4500979 aaacgaaaagaatAATTAACAGG------AG----ACCGGTGTAATTGCATA-CCAAGTGACTTGCGGACCACCGTGTCTGACCTTTCTAttcat----ccttt-----tttctctACCTCATTCCTCCACTCTCAAAACCGTGTCATGTTGTGAATTCGCGTTGATTTCC-----------GCtagtttttttgga----ttcattCAT--ATTctgcat------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   595292 185 - 33334924 TACC--ACCGAATAATTAACTGG------TG----ACCGGTGTAATTGCATA-CCGAGTCACTTGCGGACCACCGTGTCTGACCTTTCCAttcattcccttttt-----tctctctactTTCCTCCACC-------AAATCGTGTCATGTTGTGTATCTGCGTTGATTTCCGacagtttcttttcaatggTCTCAAA-CTTTTTGCCTAT--A--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1759788 176 +  4147112 TAAA--GGGGAATAATTAACTGG------AG----ACCGGTGTAATTGCATAGCCGAGTCACTTGCGGACCACCGTGTCTGACCTTTctattcattccttttttctgtctttctcCACTTTCCT-------------ATTCGTGTCATGTTGTGTATTTGCGCTGATTTCCGA-----------CAACggtttctaa-ctttttttttgttca--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I

a score=-646.000000
s ce10.chrX             3332650 39 + 17718866 ATTCTCTTGTATTCTATTTC-------AACTATTCAA--TTCATTTCG
s caeRem4.Crem_Contig0   482096 42 -  4500979 gtttttttttctagaatttctgTATGAAGTGATCAAA--TTCTG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   595477 23 - 33334924 -TTTTCTTT------------------AGTGATCAAA--TTCTG----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1759964 37 +  4147112 -gtttttttgttgtaaattc------aagtgattgaaatttctg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I
e cb4.chrX              8417012 16 + 21540570 I

a score=-41818.000000
s ce10.chrX             3332689 364 + 17718866  
s cb4.chrX              8417028 708 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   482138 392 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   595500 353 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1760001 381 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  528959 2364 -   823664 I

a score=112736.000000
s ce10.chrX             3333053 148 + 17718866 TCTA------CTTCCGTTTATT-TTGAC-TGCCAATTACCAAC------------TTTCGATAATACGT---------TTATTTCCAGAAAA------CCACTAAACTGGAA-----ACCACTGCCATCGCTCAGTTTCCTTCACAGGATACGAAGTCTGCGCAACGGC---AAAAGTTTCCCACGTAAGT
s cb4.chrX              8417736 161 + 21540570 TCTGTCtttctttccgtttttcgttttt-tgccAATTACCAAC------------TTTCGATAATTTGT-GCCCGCCGTCATTT-CAGAAAA------CCGCTAAACTGGAA-----ACCACCGCC-CCGCTCAGTTTCCTTCCTAGGATACGAAATCTGCGCAGAGGC---AACAGTTTCCCATGTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   482530 149 -  4500979 TCCG--TTTACTTCCGTCTGTT-TTTGT-TGCCAATTACCAAC------------TTTCGataattcat---------tcattt-cagaaaa------ccgcTAAACTGGAA-----ACCACCGCC-CCGCTCAGTTTCCTTCCTAGGATACAAAGTCTGCGCC-AGGC---AACAGTTTCCCACgtaagt
i caeRem4.Crem_Contig0  C 0 I 217
s caeSp111.Scaffold629   595853 149 - 33334924 TTTG--TCCTCTTCcgtctgtt-tttttctgccAATTACCAAC------------TTTCGATAATttgt---------tcattt-cagaaaa------ccgCTAAACTGGAA-----ACCACCGCC-CCGCTCAGTTTCCTTCCTAGGATACGAAATCTGCGCC-AGGC---AACAGTTTCCCATGTGAG-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1760382 149 +  4147112 TTTG--CCGTTTTCCGTCTGTT-TTTGT-TGCCAATTACCAAC------------TTTCGAtaatttgt---------tcattt-cagaaaa------ccgcTAAACTGGAA-----ACCACCGCC-CCGCTCAGTTTCCTTCCTAGGATACGAAGTCTGCGCC-AGGC---AAAAGTTTCCCTCGTGAGT
i caePb3.Scfld02_0      C 0 I 53
s caeJap4.Scaffold18194  531323 178 -   823664 ------tctctctctctctctt-ttttt-tgccaattataAACCAACGTTTCACTTTTCCCTAATTTTCcacccattttcattttcagaaaacaccATCTGGTGGACTGAAACTTCTAGCTTCCCT-CCGCTCAGTTTCCTTTCCAGGATACAAAGTGTGCGCT-AGGACGGAAAAGTTT-CTGTGTGA--
i caeJap4.Scaffold18194 I 2364 C 0

a score=-577.000000
s ce10.chrX             3333201 13 + 17718866 -GTTTTATTATGAA-
s cb4.chrX              8417897 11 + 21540570 ---TTGTTAATGAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   596002 11 - 33334924 ---TTTACAATGAA-
i caeSp111.Scaffold629  C 0 I 100
s caeJap4.Scaffold18194  531501 15 -   823664 GTTTTATCAATTCAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1760531 53 +  4147112 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=324.000000
s ce10.chrX             3333214 7 + 17718866 GTTGTTT
s cb4.chrX              8417908 7 + 21540570 GCAGATT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194  531516 7 -   823664 TTTGCTT
i caeJap4.Scaffold18194 C 0 I 796
e caePb3.Scfld02_0      1760531 53 +  4147112 I
e caeSp111.Scaffold629   596013 100 - 33334924 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=768.000000
s ce10.chrX             3333221 90 + 17718866 -------------GAAACCAAAATATGGTTGaaaattatattcataataaataaaaattCATTTGGGTTTTTCAAACTTGAAGTGCAGTTTGATTTAAAAAAT
s cb4.chrX              8417915 96 + 21540570 TCTCAACacaaaagaaatgaaaaggaAACTGTAAATAATA---ATATTGGATTAGAATTCAGTGAAGCCTCT----TctcgatttcaattttttgtaaacaaT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1760531 53 +  4147112 I
e caeJap4.Scaffold18194  531523 796 -   823664 I
e caeSp111.Scaffold629   596013 100 - 33334924 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=0.000000
s ce10.chrX             3333311 580 + 17718866  
e caePb3.Scfld02_0      1760531  53 +  4147112 I
e caeJap4.Scaffold18194  531523 796 -   823664 I
e cb4.chrX              8418011   0 + 21540570 C
e caeSp111.Scaffold629   596013 100 - 33334924 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=178.000000
s ce10.chrX             3333891 8 + 17718866 AAGTATTT
s caeJap4.Scaffold18194  532319 8 -   823664 aaataaat
i caeJap4.Scaffold18194 I 796 C 0
e caePb3.Scfld02_0      1760531 53 +  4147112 I
e cb4.chrX              8418011 0 + 21540570 C
e caeSp111.Scaffold629   596013 100 - 33334924 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=701.000000
s ce10.chrX             3333899 8 + 17718866 TAAACCTA
s caePb3.Scfld02_0      1760584 8 +  4147112 taaacaaa
i caePb3.Scfld02_0      I 53 C 0
s caeJap4.Scaffold18194  532327 8 -   823664 caaaCAAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8418011 0 + 21540570 C
e caeSp111.Scaffold629   596013 100 - 33334924 I
e caeRem4.Crem_Contig0   482679 217 -  4500979 I

a score=114078.000000
s ce10.chrX             3333907 288 + 17718866 ATTTGTTTTACAGATAAACGAACGATT--GATC--AAAC-TTTTGTTCCT-----TGAAAGAAGTATTTCATAAAAACAAAATAAAAAAC--AAGAA----------ATGGATTGCAATGG---AAACATTGCGGAAAACCCTTTCCTCAAGGTA---ATTTTTTTT---TTAACCAACA---------ATAA--------CTT------CTCTTTC----------------------------------AAAACTGCCACCCACTTTTG-----------------------TCATTTTCAGCAGGACAATGCAGCAAAGCGTTTGATAAGAAGGCGTCCGATTATAATCAGAGATACCGACACCAAGAAATGTAAGCACTGA--TATATTCAAACAAT
s cb4.chrX              8418011 295 + 21540570 GTTTATTTTGCAGATTAACGAACGATTGGAACC--AAAT-TCTTGTTTCTTATTGTCAAAGAAATAT--------aattcaatattcaaa--aaaaattcaac----atggATTGCAACGGCAACAACATCTCAGAAAATCCATTTCTAAAGGTAATTAATACCACC---CCACCCAAAATTTCCGGCCAGAAACTATTTCTAC------CTC--------------------------------------------CCCGCCCATTTCAAATTAC---------------CTCCTTTTTTCAGCAAGACAACGCTGGCAAGCGGTTGATAAGGCGGCGGCCAATAATTATTCGGGATACGGACACTAAAAAATGTGAgt---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   482896 315 -  4500979 atttcCATTGCAGATTTACGAACGATACGGATC--AAAC-TCTTGTTTCTTATTGtgaaagaaatat----aaaaaataaaacgaaaaac--aaaaaacaagg----atGGACTGCAACGG---TAACATATCGGAAAACCCATTCCTCAAggtatttacttttttc-aattgactAACAT--------AGAAATTGttacttt------tttcctt-----------------------------------ttacacccgcccaattttatttta---------------tttcttttttcagcagGACAGTGCAGCCAAGCGCTTGATAAGACGGCGGCCAATCATTATTAGGGATACGGACacaaagaaaagtgagtttcaa--t---tttcaatata
i caeRem4.Crem_Contig0  I 217 I 2
s caeSp111.Scaffold629   596113 276 - 33334924 atttcatttgcAGATTTACGAACGATTCGGatc--aaactttttgtttcttattgtgaaagaaac----------agaaaaataaaagaattaCGAATAAATC----ATGGATTGCAATGG---AAACATCTCGGAGAACCCCTTTCTTAAAGTATGCG--------GAATTGACTAACT---------ATCA--------CTT------TTCT-------------------------------------------CCCGcccaattttgatttt---------------atttctttttcagcagGACAACGCTGCCAAACGGTTGATAAGAAGACGCCCAATCATTATTAGGGATACGGACACCAAGAAAAGtgggttttt-----------------
i caeSp111.Scaffold629  I 100 C 0
s caePb3.Scfld02_0      1760592 295 +  4147112 -----atttgtaGATTTACGAACGATACGGATC--AAAC-TTTCGTTTCTTATTGtgaaagaata----------aataaaataaaaga---aaaaagaaaac----atggatTGCAATGG---AAACATCTCGGAAAACCCATTTCTCAAGGTATGCACCCTTTTCTGATTGACTAACA---------ATCatctctcccttt------ttct-------------------------------------------cccgccccattcaattttt---------------atttctttttcagcagGACAATGCTGCCAAGCGATTGATAAGGAGACGGCCAATTGTCATTCGGGATACGGACAccaaaaaatgtgagtttcag--T---GTTAATCAAT
i caePb3.Scfld02_0      C 0 I 56
s caeJap4.Scaffold18194  532335 357 -   823664 ATTTCTATTTCAGTTTTGCGAACGATTCACACCTGAAAA-TCTCTTCCGccacaagaagaagaag----------aagaaaaagaagaaa--acaagtATAATAACAATGGACTGTAACGG---GAACATTTCAGAAAACCCATTTCTCAAGGTAATTGCCCCTTTT-TGTTGAC--------------ATGTATTGTTTATTTACGTGGTTTTGTAGTAAATAAACAAGATTAAGAAATAAACCCAAAAGAATGCAACCACCCACTCCCACCTTTTTTCGCTCGCTCCAACTTTTTATTTCAGCAGGACAACGCGGCAAAGCGATTGATAAGGCGGCGACCAATCATTATTAAGGATACGGACACCATCAAATGTAAGTTTGGAGCT-------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-17287.000000
s ce10.chrX             3334195 68 + 17718866 ACTTTTATTTTTCTGATTCATAAAAAAAAGCGCTCCATAATAGTAA---AAAATCGGTTCAAATTGT------TTGA
s cb4.chrX              8418306 18 + 21540570 -------------------------------------------------aaaatt----cacatttt------ctga
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   483213 63 -  4500979 ttttcaaaagaaattattca-----aaaaatg------agtagcGGACAAAAATT-ACGCAAATTTT--ATCATTCA
i caeRem4.Crem_Contig0  I 2 I 12
s caeSp111.Scaffold629   596389 57 - 33334924 ---------ctttttatttagCATGATAATTG------AGTAGGAAAT-AGTATT----CACATATACAAATAGTAA
i caeSp111.Scaffold629  C 0 I 9
s caeJap4.Scaffold18194  532692 66 -   823664 -TTATTAGATTCCGAGTTTCCAAATAGGCTCGGTGCATAATACG-----TAGATT----CCCGTTCG-aagttttaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1760887 56 +  4147112 I

a score=90782.000000
s ce10.chrX             3334263 519 + 17718866  
s cb4.chrX              8418336 526 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   483288 492 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold629   596455 488 - 33334924  
i caeSp111.Scaffold629  I 9 C 0
s caePb3.Scfld02_0      1760943 518 +  4147112  
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold18194  532758 523 -   823664  
i caeJap4.Scaffold18194 C 0 I 235

a score=-2659.000000
s ce10.chrX             3334782 6 + 17718866 GAAAA-A
s cb4.chrX              8418862 6 + 21540570 gagaaa-
i cb4.chrX              C 0 I 109
s caeSp111.Scaffold629   596943 4 - 33334924 a-aaa--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1761461 5 +  4147112 gtgaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  533281 235 -   823664 I
e caeRem4.Crem_Contig0   483780 0 -  4500979 C

a score=-2529.000000
s ce10.chrX             3334788 11 + 17718866 TTGAAACAGTT-----------
s caeRem4.Crem_Contig0   483780 11 -  4500979 tcgagaaagtt-----------
i caeRem4.Crem_Contig0  C 0 I 173
s caeSp111.Scaffold629   596947 11 - 33334924 ---acaaaac--------aaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1761466 19 +  4147112 ---ataaaatcaggtgtgaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I

a score=-2128.000000
s ce10.chrX             3334799  5 + 17718866 CAAAA-----------------------------
s caeSp111.Scaffold629   596958  5 - 33334924 aaaaa-----------------------------
i caeSp111.Scaffold629  C 0 I 97
s caePb3.Scfld02_0      1761485 34 +  4147112 gaaactacgtggtgtagagaaaatAAGTTCGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I
e caeRem4.Crem_Contig0   483791 173 -  4500979 I

a score=-2154.000000
s ce10.chrX             3334804 590 + 17718866  
s caePb3.Scfld02_0      1761519 466 +  4147112  
i caePb3.Scfld02_0      C 0 I 59
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I
e caeSp111.Scaffold629   596963  97 - 33334924 I
e caeRem4.Crem_Contig0   483791 173 -  4500979 I

a score=0.000000
s ce10.chrX             3335394 48 + 17718866 CTTGAACAAGTTCCAAAAAAATTTGATGATTGAAAATTAACTTCTTAT
e caePb3.Scfld02_0      1761985 59 +  4147112 I
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I
e caeSp111.Scaffold629   596963 97 - 33334924 I
e caeRem4.Crem_Contig0   483791 173 -  4500979 I

a score=1211.000000
s ce10.chrX             3335442 41 + 17718866 GATTAAAGCAGTAAAATTTGGAATTAACTGAAGAATAGATA
s caeSp111.Scaffold629   597060 41 - 33334924 gatttaaaaaataaccATTGGAAAGCACTGAAGGAtaatga
i caeSp111.Scaffold629  I 97 C 0
e caePb3.Scfld02_0      1761985 59 +  4147112 I
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I
e caeRem4.Crem_Contig0   483791 173 -  4500979 I

a score=-2086.000000
s ce10.chrX             3335483 105 + 17718866 TTTTGACAAAAAATACGTTGTACATATATACCTGTATTTTTCTTTGTATCTCCAATAGGATCATTGCCTAATTTCAATTCGAACGCACCCACGTGGAATGTGATT
s caeSp111.Scaffold629   597101  69 - 33334924 ---tttaaaaaaatttgacg---------------------------ATCTT---TGAAATCATTATCTGATT---AGTCATCCTAAACTACAAAGGAATAAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762044  61 +  4147112 cTCTGTGAAAAACTACAATG---------------------------AC--------------TAATGTAATT---TGTCATATCCAACCACGTAGAAATAAGAC
i caePb3.Scfld02_0      I 59 C 0
e caeJap4.Scaffold18194  533281 235 -   823664 I
e cb4.chrX              8418868 109 + 21540570 I
e caeRem4.Crem_Contig0   483791 173 -  4500979 I

a score=13381.000000
s ce10.chrX             3335588 22 + 17718866 CCCTTCCGGTT-TGATTTCACGT
s cb4.chrX              8418977 23 + 21540570 CTCTTCCGGTTGAGATTTCACGT
i cb4.chrX              I 109 C 0
s caeRem4.Crem_Contig0   483964 22 -  4500979 CTCATCCGGTT-CGATTACACGT
i caeRem4.Crem_Contig0  I 173 C 0
s caeSp111.Scaffold629   597170 22 - 33334924 CTTTTCCGGTT-CCATTTCACGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762105 22 +  4147112 CTCATCCGGTT-TCATTTCACGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  533281 235 -   823664 I

a score=25831.000000
s ce10.chrX             3335610 192 + 17718866 AATTAGCGTTCCTTCCT------TACCGGC-ATGTGTCAAACTTCACGCG--AAATCTCTGAGATCACAAATGTATTTGCTCAACTC-----GAGCTCT--------------------------------CTCTCCCGTTCTTTGCC------TCAACTAGC-------------ACAGCTTTTCTTACGGCTTT---TCCATAAAGTATATTGATCTT----------------------AATT---------------AAGAAAATTTGTAA--ATATTCTT---TTTTTTT------------------------------CTTGCTT
s cb4.chrX              8419000 185 + 21540570 AATTAGCGTTCC-------------CGGGC-AGGTGTCAAACTTCTCACCATAAATCTCTGAGATCACAAATATATTTGCTCAATTT-----CCACACT------------------------------------CCCGTCCTTC------------ACTCT--------------ACTTTTCTTTCTACGGCTTT---CTTTTCGATATCCTC--TTTT--CCATTAGTT---------TCACTT---------------AAAATACAGTACAA--Cttattat---tttctat------------------------------tttacTT
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig0   483986 180 -  4500979 AATTGGCGTTCCAT----------ACGGGC-AGGTGTCAAACTTCTCGCC--AAATCTCTGAGATCACAAATATATTTGCTCAACTC-----TAAAGCTACAGCT----------------------------CACCCGTTCTTCT----------TATTCC--------------TCCTCTCTATTCTCAACTTC---TTTCACTACGGCTCT--TTTT--------------------------------------------ATCGAACACgatccctttttt---cttctat------------------------------cgtTCTT
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold629   597192 183 - 33334924 AATTGGCGTTCTAT-----------CGGGC-AGGTGTCAAACTTCTCGCA--AAATCTCTGAGATCACAAATATATTTGCACAACTC-----TAAAGCTACAGCC-------------------------TTCTTTCCGTTCTTCTCC--------TACTCTC------------AACTTC-TTTCATCCGGCTCT---TCTCCCGAacacttt--tcct--------------------------------------------ttttgtttctt--ctattagt---ttacgaa------------------------------tttattt
i caeSp111.Scaffold629  C 0 I 27
s caePb3.Scfld02_0      1762127 195 +  4147112 AATTAGCGTTCCTT----------ACGGGC-AGGTGTCAAACTTCTCGCA--AAATCTCTGAGATCACAAATATATTTGCTCAACTC-----TAAAGCTACAGct-------------------------ctcctcccgttcttctcc-------aaactctc------------aacttctttttctacggctctctctctATCGAACACTta--tcct-----------------------ttt---------------tcattttgtttcta--ctattagt---tttcaat------------------------------tttgttt
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold18194  533516 323 -   823664 AACCAGCGTTCTTTTGTGGAATAGCTGCGCAAAGTGTCAAACGTTCCACC--AAAACTCCAAGATCACAAATATATTTGCTCAACTCCTAGTCAAATCCGCAGCCAGCCACTACGCTGCTGCacctttttattttcctaTCCTTCTCTAGTTCGTCAGCTTTtgagtttgaataaaaacttggtcattcctatttt---ttctttcatcaCCAG--TTATGACTACTAACTGTACATAGAGCAGTTCAGCGcatgatgagaaaaaaaaattacga--gtatttttgaatttttatggcAGCACAAATAAGTAAACATTAACATTCGTTGCCT
i caeJap4.Scaffold18194 I 235 C 0

a score=-1109.000000
s ce10.chrX             3335802 74 + 17718866 ATCGATTAT---GATGTCAA-----CTCAACATTTCGCACGTTTATTGCATTTTA-------GTTTTCGTATCAT----CAATGTTTGATAGT
s caeRem4.Crem_Contig0   484190 81 -  4500979 AGGAgttat---aatgaaaaat--gtttatagtTTTATATGCTtgcttcctttttcttct--ccatttttttca-----tgcAGCTTGATAGT
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold629   597402 76 - 33334924 aaaagttttctcaaTATGAAAT--GTTTATTGCTTTATAGGCGTGCTTCTCTTT--------CCATTCTTGTCATCTATTGATG-------GT
i caeSp111.Scaffold629  I 27 C 0
s caePb3.Scfld02_0      1762349 88 +  4147112 agcttttttctcaatgagaAAT--GTTTATAGCTTTATAGTCttgcttctcttttcttc---ccattcttGTCATCTCATGCTGCTTGTCAGT
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold18194  533839 84 -   823664 Tgccattcattcattcattcattcattcattcattcatcctctctcctctctcctcttccaaccatttctgtttt---------cttcatAGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8419185 117 + 21540570 I

a score=79761.000000
s ce10.chrX             3335876 204 + 17718866 ATAGTT-------TGAAAACCGAGAAATACCAAACAAGAAGGAAAATGAGAAAAAG-AAAGTAAACAAA--------------AAAAAACGAGTACACATTATGCTAATTTTTCG-TCTTTCATGTAAAATCATCATGTAAAATCTGTG-----TCA------AATTGGAA-TGCGACCACACCGTAGATATCAGAATCTCTCCACAA---GCCGCACATCTAAGATCTCATTTTTTTTGTC---
s cb4.chrX              8419302 198 + 21540570 ATAGCTGTAcaactaaaaa----------atatataataggaaagatgagaaaagg-aaagcaaacaacatgaacaaaaaaaaaagaaacgagtACACATTATgctaatttttccatttcc------aaaTCATCATTCGAAATCTGTGTCAGATCG------AATGGAAATTGCGACCTCAccatagatatcaaaaatttt---------gcctTTCCTCTGACA---------TACA------
i cb4.chrX              I 117 C 0
s caeRem4.Crem_Contig0   484271 185 -  4500979 ATAGTT-------TGgaaa------------acataat-ggaaaaatgagaaaaggaaaagtaaacaac-------------aaaaaaacgagtaCACATTATGCTAATTTTGCC-TTTCC------AAATCGTCGTGTAAAATCTGTG-----TCG------AATGGAAA-TACGGC--CACCATAGATATCAGAATTCTCCTGCAGCAACCTTTTAGTCTGAGACCTACCAACCACA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597478 184 - 33334924 ATagtt-------cgaaaa------------atataat-agaaagatgagaaaagg-aaagcaaacaac--------ta----aaaaaacgAGTACACATTATgctaatttttct-attgc------AAATCATCGTGTAAAATCTGTG-----TCG------AATGGAAA-CGCGAT--CACCCTAGATATcagaattcttcttcaagCAACCTTTCATCTAAGACCTCACAACCAT-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762437 182 +  4147112 ATAGTT-------TGGgaa------------atataat-aaaaagatgagaaaagg-aaagcaaacaac--------cgaaataaaaaacgagTACACATTATGCTAATTTTTCT-ATTGC------AAATCATCGTTTAAAATCTGTG-----TCG------GATGAAAA-CGCGAC--CACCCCAGATATCAGAATTTCTCCTCAAGCAACCTT-------AGACCTTCATACCACA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  533923 169 -   823664 ATAGTA-------TGCAAA-------------TAtcgc---------caaaaaaag---------------------------aaaaaaagtgtaCACATTATGCTAATTTCTCTCTTCTC------AAATCATCGTCAAGAATCTGTG-----TCGTACGAAAAGGAAAA-TGCGACCCCTTGAAAGATATCAGAATTCAT-----TGCAAGCGTTCATCTAAGACCTCCTACCCTTT---TTC
i caeJap4.Scaffold18194 C 0 I 250

a score=17707.000000
s ce10.chrX             3336080 110 + 17718866 TCTTTCCCCTACATTTATTCCTCGGAGATTGCAGATGACGGTTCAATAACCACATTGGGTCGCCTGGTTTTTTTTTCGCATTATTTTAGTAGTGGTGTAGCTAGTTACGC
s cb4.chrX              8419500  65 + 21540570 -ACCTCTCATCTACCATTTTCTCGGAGATCGTCGCTGTCgattca-----------------------tgtttt-----------t----------ttcgaCAATATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   484456  90 -  4500979 -TTTTTTCCTTCATCTTTCTCTCGGAGATCGTCTATGACGATTCAATAACTACATCGA-TC------TTGTTTT--AGTATTCTCT----------CTAGCTAGTAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597662 100 - 33334924 ---TTTCCCTTCATTTATGTTTCGGAGATCGCCCATGACGATTCAATAACTGCATcgattc------ttgttttttgttgtttcttctATA-TGTAATAGCTTGTAATTC
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1762619  91 +  4147112 ---TTTGCCTGCATTCATTTCACGGAGATCGTCTATGACGATTCAATAACTACaccgattc------tttttttttgcgatttccT----------GTAGCTAGTAATAC
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18194  534092 250 -   823664 I

a score=-2586.000000
s ce10.chrX             3336190 17 + 17718866 ATGCATACTTTTTGCTG
s cb4.chrX              8419565  9 + 21540570 CTATGTA--------TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   484546 15 -  4500979 CTATATACCTT--GTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597764 11 - 33334924 TTACCTAGCCC------
i caeSp111.Scaffold629  I 2 C 0
e caePb3.Scfld02_0      1762710  5 +  4147112 I
e caeJap4.Scaffold18194  534092 250 -   823664 I

a score=12346.000000
s ce10.chrX             3336207 73 + 17718866 TATTTACCGGC----GCTTGTAT----TTATTTCATCTAACACCAAA------AGGCTAATGT--TATGCAAAACAAATAACAGG--TTCA
s cb4.chrX              8419574 84 + 21540570 TAGCTAGTAATGTAGACTTGTATATTACCTCTTC-----CCACCTATTAATGGATTATAATACTATATGCAAAACAAATAACAGG--TTCA
i cb4.chrX              C 0 I 140
s caeRem4.Crem_Contig0   484561 68 -  4500979 TATTTAGTGAC----ACTCATAT----TCATTCC-----ACACCTAT------AGGATAATGT--CATTCAAAACAAACAACAGG--TTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597775 66 - 33334924 TATTCACCGGC------TGGCAT----TTGTTTC-----ACACCTAT------GGGATAATGT--TAGCCAAAACAAACAACAGG--TTGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762715 58 +  4147112 TATTTACAAGC-------AATAT----T--------------CACGT------AGAGTAATGT--TATCCAAAACAAACAGCTAGTTTTGA
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18194  534092 250 -   823664 I

a score=-1124.000000
s ce10.chrX             3336280 4 + 17718866 TCCT---
s caeRem4.Crem_Contig0   484629 4 -  4500979 TCTT---
i caeRem4.Crem_Contig0  C 0 I 91
s caeSp111.Scaffold629   597841 1 - 33334924 ---T---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762773 4 +  4147112 ---TTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I

a score=-1317.000000
s ce10.chrX             3336284 26 + 17718866 TTTTCCTTCCAGATT--TTTTGCCGGGA-
s caeSp111.Scaffold629   597842 12 - 33334924 -----------------TTGTATCCAGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762777 28 +  4147112 GTCATTTTCACGCTTGGTTTTGCCTAGA-
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I
e caeRem4.Crem_Contig0   484633 91 -  4500979 I

a score=573.000000
s ce10.chrX             3336310 6 + 17718866 GTGCTA
s caeSp111.Scaffold629   597854 6 - 33334924 Gtgcta
i caeSp111.Scaffold629  C 0 I 84
e caePb3.Scfld02_0      1762805 76 +  4147112 I
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I
e caeRem4.Crem_Contig0   484633 91 -  4500979 I

a score=0.000000
s ce10.chrX             3336316 723 + 17718866  
e caePb3.Scfld02_0      1762805  76 +  4147112 I
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I
e caeSp111.Scaffold629   597860  84 - 33334924 I
e caeRem4.Crem_Contig0   484633  91 -  4500979 I

a score=46.000000
s ce10.chrX             3337039 21 + 17718866 ATAAAAACAACTCTAAACCCC
s caeRem4.Crem_Contig0   484724 17 -  4500979 atcaataaaacttcAGA----
i caeRem4.Crem_Contig0  I 91 C 0
e caePb3.Scfld02_0      1762805 76 +  4147112 I
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I
e caeSp111.Scaffold629   597860 84 - 33334924 I

a score=0.000000
s ce10.chrX             3337060 1 + 17718866 G
e caePb3.Scfld02_0      1762805 76 +  4147112 I
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I
e caeSp111.Scaffold629   597860 84 - 33334924 I
e caeRem4.Crem_Contig0   484741 0 -  4500979 C

a score=5463.000000
s ce10.chrX             3337061 11 + 17718866 AACTTAGTGAT
s caeRem4.Crem_Contig0   484741 11 -  4500979 AACCTGGTGat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597944 11 - 33334924 AACCTAGTgat
i caeSp111.Scaffold629  I 84 C 0
s caePb3.Scfld02_0      1762881 11 +  4147112 AACCTAgtgat
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18194  534092 250 -   823664 I
e cb4.chrX              8419658 140 + 21540570 I

a score=1910.000000
s ce10.chrX             3337072 2 + 17718866 CT
s cb4.chrX              8419798 2 + 21540570 CT
i cb4.chrX              I 140 C 0
s caeRem4.Crem_Contig0   484752 2 -  4500979 ct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   597955 2 - 33334924 ct
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1762892 2 +  4147112 ct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  534092 250 -   823664 I

a score=189715.000000
s ce10.chrX             3337074 284 + 17718866 TTCCG--TCTTCATCTCGTTTTTTCGTTGATT--------------TTCCGTA---TCCATTCAAGAGCTTTT---CTTTCAC---TTATTTT--GTGCCCATCCGAAAA-AGCACTC-AAGAATA---TAGTGCCACTGATACGGTCATTTGTTAGCTCACGCTCATGCA-TTTCTCGCTCACTTGATTGCC----CCTCCCTGC--------CCGTAAAACACAGGTTTGT------AGAGGCTTCCTCGCTTTTTCT--------------TCCGAATGACCAA----CACTCTT--------CAACATGCACATTGT---TTTACGATTAGCAG-ATTTTGGTGCTCGTCTTTAAAAAGCA
s cb4.chrX              8419800 309 + 21540570 TTCCA--CTCTCCTACCATTCCTTT---------------------TTCCGTA---TCCATTCAAGAGGCTTT-------------TTGTTTT--ATTCCCATCCGAAAA-AGCACTC-AAGAATA---TAGTGCCACTGATACGGTCATTTGTTAGCTCACGCTCATGCA-TTTCTCGCTCACTTGATTGCC----CCTCCTTGCTTTGTTGGCCGTAAAACACAGGTTTGTAAAGAAAGAGTCTTCCTCTTTTCCTCTATCTTTTTTCGTCGTCCAAATGACCAAGAGGCACTCTTGAAAACAGAATCATACACATTTTTGCTCCAAGATTAGCACTCATTT-----TCTTCCTTAAAGATCA
i cb4.chrX              C 0 I 709
s caeRem4.Crem_Contig0   484754 307 -  4500979 tttcgtcttttttcaccattcctttttcctatttttctattttctattccgta---tccattcaagagctttttG-CGACCATCCATCGTTTT--GTGCCCATCCGAAAA-AGCACTC-AAGAATA---TAGTGCCACTGATACGGTCATTTGTTAGCTCACGCTCATGCA-TTTCTCGCTCACTTGATTGCC----CCTCCTTGCTTTTCTGGCCGTAAAACACAGGTTTGT----AAAGAgtcttcctttctttttct--------------tccgaGTGAC-------CACTCTT--------CACTATGCACATTCT---TTTACGATTAGCAC-CATTT-----ATTTCTTTAAAGAACA
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629   597957 280 - 33334924 tttc---ctctttttccgttCCATTTTCCTCA--------------TTCCGTA---TCCATTCAAGAGCTTTTCG-CGTCCA----TCGTTTT--GTGCCCATCCGGAAA-AGCACTC-AAGAATA---TAGTGCCACTGATACGGTCATTTGTTAGCTCACGCTCATGCA-ATTCTCGCTCACTTGATTGCC----CCTCCTTGCTTTTCTGGCCGTAAAACACAGGTTTGT----AAAGAgtcttcctctctttttct--------------tccgaatgaC-------CACTC-------------AATGCACATTCT---CTTACGATTAgcat-cattt-----ttgtctttaAAGAAC-
i caeSp111.Scaffold629  C 0 I 72
s caePb3.Scfld02_0      1762894 292 +  4147112 tttctt-cttttttttcactttctatTCCTTT--------------TTCCGTA---TCCATTCAAGAGCTTTTCACCGTCCAT---TCGTTTT--GTGGCCATCCGAAAA-AGCACTC-AAGAATA---TAGTGCCACTGATACGGTCATTTGTTAGCTCACGCTCATGCATTTTCTCGCTCACTTGATTGCC----CCTCCTTGCTTTTCTGGCCGTAAAACACAGGTTTGT----AAAGagtcttcctctctttttct--------------tccgaatGAC-------CACTCTTCA------CAAAATGCACATTCT---TTTACGATTAgcat-cattt-----tcatctttgaaaaac-
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18194  534342 261 -   823664 ttcc---tttttcttccttttta-----------------------taCCGTAATTTTGGTTTGAGAGCTTT--------------TCATTCTGGGTGACCATCCGAAAAGAGCACTTGAAGACTAGAGCAGTGCCACTGATACAGTCCATTGTTAGCTCACGCTCATGCA-ATTCTCGCTCACTTGATTGCTGCAGTCTTCTTGCTTTTCCCATCGTAAAACACAAGTTTGT---CCTCCACTCTCCCTTGATTTGCTT--------------TCCGAGTGAC-------CACTCTTTTT-----CACAGAACACACTTT-----------CAGCAG-ATTT----------------------
i caeJap4.Scaffold18194 I 250 C 0

a score=-28285.000000
s ce10.chrX             3337358 102 + 17718866 AAATAGTTTGCTTAGCGAC------------------------TTATTTTTAATAT-------------------ATTCTTGTACTTCAAAACTCAGCTT--TTGTGCC--CGTTGTAGCTCTTTTTCGAC--------TCGAGTAAA-TTTTCTCCA----
s caeRem4.Crem_Contig0   485090  88 -  4500979 AAACTAGATTTAGATCTAC---------------TGAAATTAATAGAAATGACCGT---------------------------------TCAGTCACATTCGTTCTGCC------TAATCCTTGTTTTGCc--------tc--------tctttctca----
i caeRem4.Crem_Contig0  I 29 I 19
s caeSp111.Scaffold629   598309 122 - 33334924 AAACCCTTAGTGAAATTGCGATATCCTCCTCAAATTggattcatttttatgaatat-------------------aTTATTCCAGCAGTTTAGTCAAGTT--TTCAATC------TAAATATATTGTTCTC--------TCCGTTAAT-TCACGTTTA----
i caeSp111.Scaffold629  I 72 I 24
s caePb3.Scfld02_0      1763208 129 +  4147112 AGATTTTACGTAGGACTAC----------------------CGTAATCTGGAATACGATGCCAATTAGTGGCTGAATCTTTCCAAAA--TGAGTCAAATT--TTGAGAC---GATTCATCATATTTCTCTCATAACATTTCCAGAAGTGTCATATTCA----
i caePb3.Scfld02_0      I 22 I 92
s caeJap4.Scaffold18194  534603  61 -   823664 --------------------------------------------------GCTCAT---------------------------------TAACTTTTGTT--TCCTACCTTCCGTTCTTCATTGTTCTCTT--------TT--------TGTCTTGCAGAAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8420109 709 + 21540570 I

a score=706192.000000
s ce10.chrX             3337460 1315 + 17718866  
s cb4.chrX              8420818 1346 + 21540570  
i cb4.chrX              I 709 C 0
s caeRem4.Crem_Contig0   485197 1364 -  4500979  
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold629   598455 1339 - 33334924  
i caeSp111.Scaffold629  I 24 C 0
s caePb3.Scfld02_0      1763429 1354 +  4147112  
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold18194  534664 1357 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=3820.000000
s ce10.chrX             3338775 4 + 17718866 AGGT
s cb4.chrX              8422164 4 + 21540570 AGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   486561 4 -  4500979 AGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   599794 4 - 33334924 AGGT
i caeSp111.Scaffold629  C 0 I 77
s caePb3.Scfld02_0      1764783 4 +  4147112 AGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536021 0 -   823664 C

a score=-1118.000000
s ce10.chrX             3338779 3 + 17718866 GAT-
s cb4.chrX              8422168 3 + 21540570 AAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   486565 3 -  4500979 AAg-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1764787 3 +  4147112 -AGT
i caePb3.Scfld02_0      C 0 I 88
e caeJap4.Scaffold18194  536021 0 -   823664 C
e caeSp111.Scaffold629   599798 77 - 33334924 I

a score=1115.000000
s ce10.chrX             3338782 12 + 17718866 GGGACAAAAATT
s cb4.chrX              8422171 12 + 21540570 TAGCCAGAGATT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   486568 12 -  4500979 tgaacaaaaatg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1764790 88 +  4147112 I
e caeJap4.Scaffold18194  536021  0 -   823664 C
e caeSp111.Scaffold629   599798 77 - 33334924 I

a score=556.000000
s ce10.chrX             3338794 57 + 17718866 TAAACAGAAAAA-TATGAATTCTAAATACATCGGGt-----aaaattaaaaatttgaaattaa
s caeRem4.Crem_Contig0   486580 63 -  4500979 aatacacAAAAACTGTGACTGGTTAATATTTCTAGTGTTCAAAGATTCATAAATCGTAGATAA
i caeRem4.Crem_Contig0  C 0 I 22
e caePb3.Scfld02_0      1764790 88 +  4147112 I
e caeJap4.Scaffold18194  536021  0 -   823664 C
e cb4.chrX              8422183 25 + 21540570 I
e caeSp111.Scaffold629   599798 77 - 33334924 I

a score=0.000000
s ce10.chrX             3338851 809 + 17718866  
e caePb3.Scfld02_0      1764790  88 +  4147112 I
e caeJap4.Scaffold18194  536021   0 -   823664 C
e cb4.chrX              8422183  25 + 21540570 I
e caeSp111.Scaffold629   599798  77 - 33334924 I
e caeRem4.Crem_Contig0   486643  22 -  4500979 I

a score=455.000000
s ce10.chrX             3339660 5 + 17718866 TTTTT
s caeSp111.Scaffold629   599875 5 - 33334924 TTTTT
i caeSp111.Scaffold629  I 77 C 0
e caePb3.Scfld02_0      1764790 88 +  4147112 I
e caeJap4.Scaffold18194  536021 0 -   823664 C
e cb4.chrX              8422183 25 + 21540570 I
e caeRem4.Crem_Contig0   486643 22 -  4500979 I

a score=-153.000000
s ce10.chrX             3339665 13 + 17718866 TATAATTTAAAAA
s cb4.chrX              8422208  8 + 21540570 tacaattt-----
i cb4.chrX              I 25 C 0
s caeSp111.Scaffold629   599880 13 - 33334924 CGTAATTGTAGTA
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1764790 88 +  4147112 I
e caeJap4.Scaffold18194  536021  0 -   823664 C
e caeRem4.Crem_Contig0   486643 22 -  4500979 I

a score=2562.000000
s ce10.chrX             3339678 4 + 17718866 TTGC
s cb4.chrX              8422216 4 + 21540570 ttgC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   486665 4 -  4500979 ttgc
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold629   599893 4 - 33334924 TTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1764878 4 +  4147112 TTAC
i caePb3.Scfld02_0      I 88 C 0
e caeJap4.Scaffold18194  536021 0 -   823664 C

a score=231985.000000
s ce10.chrX             3339682 431 + 17718866 AGGTCCTTAACGACGCGGACACCAACAAATCTGAACCAGAATTTGTACAAATTGCACGACGCCTCCGTAGATTCCAACCAGAA---ATCCATGATACGTTTGCCAACGTGACAAATGTATCAAGCAACACAAATGTtactactactactactactaTtaataataataataataataataTTCACATCAATAGTTCC------------TATTCATTGAAAGCAACAACTCTGCCTCCCACGCCGACTCACGCGGCTCCAGTGCGTCCTGCCACACTCTGTGAGT--------TTACTCTCTAT-CTCTAATTTCTTTT--------------------------GCAACGT--TTAC-----TACTTATAGCAATGTGGCAACGTAAACAACCAGATATCCCTCAATATTCCGAAGCAGCTAAAATAATCAGAGAGACGTGTGACATTGCAGTTTTGCCATCTGATCCCCATTCTGCAAGGTAAGTG
s cb4.chrX              8422220 407 + 21540570 AGATTCTCAATGACGCCGATAGTAATCAAGGAGAACCAGAATTTGTACAAATCGCTCGTCGTCTACGTAGATTCCAACCAGAACACACACATGATACGCC---------------------------TCCTAGTCCAGCTACAAATGCTCATA---------TTGTTATAAATAATAATATTCAC------------------------AAGCCA---------ACATCTTTGCCGCCCACGCCTACTCAAACGGCTCCGGTCCGTCCGGCGACTCTCTGtgagt---tcttctt---cttttt-tattctcttttttcacattaGTCCGCTCTTCATCACGCTGTTCATCTCATTAT-----TTCTTGCAGCGATGTGGCAACGCAGACAACCAGAAGTCCCACAATTCTCGGATGCGGCCAAGATAATCAGAGAGAACTGCGACATCGCCGTTCTGCCGCCAGACCCACACTCAGCCAGGTATGAa
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   486669 450 -  4500979 agGTTCTGAATGACGCCGACAGCAGTAAAGGAGAACCAGAATTTGTACAAATTGCACGACGCCTCCGCCGATTCCAACCAGAG---ATCCATGATACATTTGCATCTGCG---AATGCAAGCACAAATACAAATACAACTACAAGCGTTCATAACAATATtgttaataataataataatattcaCATCAATAGTTCT---------ACAAAATCATCAATTGCCACATCATTGCCACCCACGCCTACTTCAGCAGCTCCGGTCCGCCCAGCGACTCTTTGTGAGT---TCTTATTATCCTCTTT-TCCTATCCccattcatttta-------tttcatc------tttttttcatt-t-----ttcttgcagCAATGTGGCAACGTAGACAACCAGAAGTGCCTCAATATTCCGATGCAGCCAAGATAATCAGAGAGAATTGTGACATTGCGGTTTCTCCACCAGACCCACACTCAGCTAGGTATGTG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   599897 438 - 33334924 AGGTGCTGAATGATGCCGATACAAACAAATCAGAACCAGAATTTGTACAAATCGCTCGACGTCTCCGTAGATATCAACCAGAA---ATTCATGATACTACAGTATCTGTG---AACACAACAACAACTAACAGCGCAAATAGTCATGTTataaacaataataacaatattaataataatatgcacataaataatTCG---------CCGAAGCCAACAACCGCCACCTCATTGCCGCCCACGCCGACCCAAGCGGCTCCTGTCCGCCCAGCGACTCtctgtgagt---tttttttatccTGTTT-TCTTATTACTTTCT--------------------------CTCacttcattat-----tttttgcagCAATGTGGCAAAGCAGACAGCCGGAAGTCCCACAATATTCTGAGGCAGCTAAGAtaatcagagaaaattgtGACATCGCAGTTCTGCCGCCAGACCCACATTCAGCCAGGTATGTG
i caeSp111.Scaffold629  C 0 I 45
s caePb3.Scfld02_0      1764882 431 +  4147112 AGGTCTTGAACGATGCCGACACAAACAAAGGAGAACCAGAATTTGTACAAATCGCTCGACGTCTTCGTCGTTTCCAGCCAGAA---ATCCATGATACAATTGTATCTGTG---AATAATACTACA------AGCACATCTCTTCa---taacaacaatactactaataataataataacgttcatataaataatTCG---------TCGAAGCCCACAATTGCCACATCATTGCCACCCACGCCTACTCAAGCGGCTCCGGTCCGCCCCTCGACTCTTTGTGAGT---TCTTATCCCCTCATTTATCCCATTAAATTTC--------------------------GTCAcgttattctttttgtttttgcagcaATGTGGCAACGTAGACAGCCGGAAGTCCCACAATATTCCGAAGCAGCGAAGATAATCAGGGAGAATTGTGACATTGCAGTATTGCCGCCAGACCCGCACTCAGCCAGGTA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  536021 427 -   823664 AAGTTCTCAATGACGGAGAGGCTGTTGCCGGCGAGCCAGAGTTTGTGCAAATTGCTCGACGACTGCGCAGATTCCAGCCGCAA---ATCCATGACACTGCTCAATCGTCG---------------------AATACAACTTC---TGTCTCCTACACGAATTCTACTAATAACAACAACATGCACAATAATAACTTTGCTTCTTATTCGACAAAAACAACCGAAGCTCCTATGCCTGTGCCGCCTGCTCAACCGGCTCCGGTCCGCCCAGCCACTTTATGTGAGCCGATTACATTTATTTCTTC-CCACACTTTcttta--------------------------ttattgttttctt-----GTCTTTCAGCGATGTGGCAACGCAGGCAACCAGAAGTTCCCCAATATTCGGAAACGGCTAAAATAATCAGAGATACATGTGACATTGCCGTGCTGCCGCCAGACCCGCATTCAGCCAGGTAAG--
i caeJap4.Scaffold18194 C 0 C 0

a score=-2476.000000
s ce10.chrX             3340113 38 + 17718866 TGTGTGGCAGACGAG------------AAGAGTTGAGTGTCGAAATATCA
s cb4.chrX              8422652 47 + 21540570 caca---caaacgAGATTCACACAGAGAAGCGTGAGATTCggagaaaata
i cb4.chrX              I 25 I 9
s caeRem4.Crem_Contig0   487121 20 -  4500979 ---------------------------AGGCATgaaat---gagatttta
i caeRem4.Crem_Contig0  I 2 I 8
s caePb3.Scfld02_0      1765313 36 +  4147112 TGTGT--CAGACGAG------------TAGAGTGAGAAGGACGGATTTTG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194  536448 38 -   823664 CGCGTGGCAGACGAG------------GGGAGCAGGATATTGAAATAGAG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   600335 45 - 33334924 I

a score=141046.000000
s ce10.chrX             3340151 239 + 17718866 TATAATTTTAAGAGTCTCCATACAACCAATTCCATCAATTATAAGTGAA------------------------AACAGCAGCCGTTCGACGACTCCTGTCAAGGCAAGCCCCCCACCAGAGGAGCCAAAGCCGAATGTGGTTTGTTACATTTCCGGTCGGATTATCCGTCATTTAATGCAA----T--------GTT-----------------TTTTTTCAGTTAGAAACGTACGCGCAATACAGGAAAACTGTTGTTGATATATCATCTACCGATAGAACATGTAAGttt
s cb4.chrX              8422708 266 + 21540570 TGTAAATTCCAGAGTCTCCAAACAACCAATACCTTCAATCGGAAGCGATATTAGTAGCAGCAGTGGCAGCAGCATCAGCGGTCGATCGAACACGCCGAGCGACGCCAGCCCGCCCCCAGAGGAGCCGAAGTCGAATGTGGTTAGTCAACGGCGCCGCCGGATTATCTGC-------TACAAATTCTTATTTcgcattt----------------atttttcagttggagACTTACGCGCAATTCCGAAAGACAATCGTCGACATCTCTTCT---GACAGAACATGTGAGTTT
i cb4.chrX              I 9 I 13
s caeRem4.Crem_Contig0   487149 230 -  4500979 tgTGAATTCTAGAGTCTCCAAACAACCAATACCTTCAATCGGAAGCGAG---------------------------AACGGGCGATCGAATACGCCGGTGGAGACAAGTCCGCCCCCAGAGGAGCCGAAGGCAAATGTGGTTTGTCACC-GCCCGGTCGGATTATCCGt-------tacaattttt--------gtta----------------ttttttcagttggagAGTTACGCGCAGttcagaaaaacaattgtCGATATTTCTTCT---GACAGAACATGTAAGTTT
i caeRem4.Crem_Contig0  I 8 I 189
s caeSp111.Scaffold629   600380 226 - 33334924 taTGAATTTTAGAGTGTCCAAACAGCCAATTCCTTCAATCGGGAGCGAG---------------------------AACTCTCGATCGAATACACCGGTAGAGGCAAGTCCGCCTCCAGAGGAGCCAAAGCCGAATGTGGTTTGTCGTTAAC--GATCGGATTATCTGT-------tacaa--att--------gtt-----------------ttttttcagttagaGAATTATTCtcagttcagaaaaacaatcgtTGATATCTCTTCT---GACAGAacttgtgagttt
i caeSp111.Scaffold629  I 45 C 0
s caePb3.Scfld02_0      1765359 220 +  4147112 TATGAATTCTAGAGCGTCGAAA---------CCTTTGATCGGAAGCGAG---------------------------AACGCTCGATCGACTACATCAGTTGAGGCAAGCCCGCCTCCAGAGGAGCCAAGGCCGAATGCGGTTTGTCGTTTGCCAGAT-GGATTATCTGT-------TACAattctt--------gtt-----------------atttttcagttagaGAATTATTCGCAGTTCCGAAAAACAATCGTTGATATTTCTTCT---GACAGAAcatgtgagttt
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194  536486 247 -   823664 TTTATTTTTAAGAGGATCGAAACAGCCAATACCCTCCATAACAACGGAA---------------------------AACGACCGCCCATCCATACCAGTGGAAACTAGTCCACCGCCGGAGGAGCCGAAACCGAATGTGGTTTGTTcttttgaaaatcatttttttact-------tttcattCAT--------ggaagaaaaccaaaaaacactattttcaGTTAGACAATTACTCCCAGTTCAGAAAGACAATTGTCGATATTTCGTCA---GATAGAGAATGTGAGttt
i caeJap4.Scaffold18194 C 0 C 0

a score=-11133.000000
s ce10.chrX             3340390 25 + 17718866 tatt---------------tatgat----attttttttcaattt
s cb4.chrX              8422987 25 + 21540570 tttt---------------gaattt----tttcttgttttcgtA
i cb4.chrX              I 13 C 0
s caeSp111.Scaffold629   600606 40 - 33334924 ttttatttatatgAATCATAGATTT----ATTCATGTGAGATTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1765579 11 +  4147112 cttt--------------------------ttcccat-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  536733 32 -   823664 -----------ctaaataaaattttggcaatttttataaattt-
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   487379 189 -  4500979 I

a score=2352.000000
s ce10.chrX             3340415 16 + 17718866 taaatttaCTGTTCAA
s cb4.chrX              8423012 16 + 21540570 TAAACTAATTAATCAA
i cb4.chrX              C 0 I 1002
s caeSp111.Scaffold629   600646 16 - 33334924 TGTGCTCAATGCtcag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1765590 14 +  4147112 --tgttcattaatcag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536765  0 -   823664 C
e caeRem4.Crem_Contig0   487379 189 -  4500979 I

a score=-41.000000
s ce10.chrX             3340431 5 + 17718866 AAACT
s caeSp111.Scaffold629   600662 5 - 33334924 aaatt
i caeSp111.Scaffold629  C 0 I 77
s caePb3.Scfld02_0      1765604 3 +  4147112 aaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536765 0 -   823664 C
e cb4.chrX              8423028 1002 + 21540570 I
e caeRem4.Crem_Contig0   487379 189 -  4500979 I

a score=-5820.000000
s ce10.chrX             3340436 575 + 17718866  
s caePb3.Scfld02_0      1765607 325 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536765   0 -   823664 C
e cb4.chrX              8423028 1002 + 21540570 I
e caeSp111.Scaffold629   600667  77 - 33334924 I
e caeRem4.Crem_Contig0   487379 189 -  4500979 I

a score=4207.000000
s ce10.chrX             3341011 49 + 17718866 AAAAA----CGATTAAATAAATCCTGTTTGTGATACAGTTCCTATTACTTCAT
s cb4.chrX              8424030 48 + 21540570 aaaca----ccatctaa-aaatctagtttCAGTTCCAGTTCCTTATACTTTct
i cb4.chrX              I 1002 C 0
s caeSp111.Scaffold629   600744 43 - 33334924 AAAAAcgtttgatcaaa-aaatccgGTTCTTGTTCCAGTTCCAT---------
i caeSp111.Scaffold629  I 77 C 0
s caePb3.Scfld02_0      1765932 31 +  4147112 ---AA---------GAA-AAATCCGGTTCCAGTTCCAGTTCCAT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536765  0 -   823664 C
e caeRem4.Crem_Contig0   487379 189 -  4500979 I

a score=-4103.000000
s ce10.chrX             3341060 36 + 17718866 TG--TCAATTTCTACCTATTAAAATATTGTTTATTTTT
s cb4.chrX              8424078 27 + 21540570 ------tattt---caaagt--tttaatgGTTGTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   487568 28 -  4500979 TG--TCCATTTGTACCAATG--TTAAATG------TTT
i caeRem4.Crem_Contig0  I 189 C 0
s caeSp111.Scaffold629   600787 25 - 33334924 TGTCTCCAACTGTACCTAT-------TTG------TTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1765963 29 +  4147112 TG--TCCATCAATACCtat-------atgtttcttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  536765  0 -   823664 C

a score=225136.000000
s ce10.chrX             3341096 330 + 17718866 CAGCAGCTGTGAATAGTGTCTTCAAGTACGACAATTTATCGCC---------------AGCTGT--CAAGAGTCCAATA---AGTAGCAATCTTTGGAAACCAACTATAAATAGTC---CAACAATGTCTACCACCGAATCA---ACCATCTCGCCTGTAGCCTCCTCAC------------------CAACTGCTTCAAAACTTCCGTTCGTTTCGCGCAAAGTGGATGACGTCGGCGCCAAGTCGATGATCACTTCTT------------CAAATGTGGTGTCCATATCCGTCAAAGCTCCTGTATCCAACCGGATTTACTCAAACTGTGAGTC----------------AGAT---TTTTGGTAT-----------TTGGG-G---TAGCAATAAATAAAGTG-CCTCAAATATTGAC
s cb4.chrX              8424105 359 + 21540570 TAGCCGCTGTGAACAGTG---TCAAATACGACAACCCATCGCC---------------GGCAAT--AAAAAGTCCGATTACCACCAACAATCTTTGGAAGCCAACTATCAATAGTCCGTCGTCAATGTCA---TCGGAATCATCGAC------------AGTGTCATCGCCGGCGGTGTCGGCAGCGGCAACCGCTTCAAAACTACCGTTCATCTCGCGTAAAGTGGATGACGTCGGCGTCAAATCAATGATC---------ACAT------CGAACGTCGTGTCTATATCCGTGAAAGCTCCCGTCTCAAACTGGATTCACTCAAATTGTGAGTCATATGAGAAACAAGAGAGGT---GTTTGGTTT--------TAATAAGATG-AGTCGGGGATGATTGAGTGTTCTCAAATATTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   487596 348 -  4500979 CAGCAGCTGTGAATAGTGTCTTCAAATACGACaacccaccaccaccaccaccgtcTCAGGCAAT--TAAAAGTCCGATT---ACTAACAATCTTTGGAAGCCAACTATCAATAGTC---CATCAATGTCA---TCGGAATCA---AC------------AGTGTCCTCGC------------------CAACTGCTTCAAAACTTCCGTTCCTTTCCCGTAAAGTGGATGACGTCGGCGCCAAGTCAATGATCACTTCGTCAACAG------CGAACGTGGTGTCTATATCCGTCAAAGCTCCAGTCTCAAACCGGATTTACTCAAATTGTGAGTC----------------AGAT---GTTTGGTATCAGGGTAGCAataatg-g-aagagaaaaagatagagtG--CTCAAATATTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   600812 320 - 33334924 CAGCCGCTGTGAATAGTGTCTTCAAATACGACAGTTCATCACC-----------------------AAAGAGTCCAGTC---ACTAATAATCTTTGGAAACCAACACTTAATAGTC---TATCAATGTCT---TCGGAATCA---AC------------AATGTCCTCAC------------------CAACTGCTTCAAAACTTCCGTTCTTTTCTCGTAAAGTGGATGACGTCGGCGCCAAGTCGATGATCAGTTCGTCATCAG------CAAATGTTGTGTCTATATCCGTCAAAGCTCCAGTCTCAAACCGGATTTACTCAAACTGTGAGTC----------------TGAT---ATTTGGTAG--------CAATTGGG-GTCGGGGCAAAAGATAGAGTG--CACAAATATTTAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1765992 319 +  4147112 cagctgctGTGAATAGTGTCTTCAAATACGACAACCCATCACC---------------TGCAAT--CAAGAGTCCAGTT---ACCAATAATCTTTGGAAACCAACTCTCAATAGTC---CATCAATGTCA---TCTGAATCA---AC------------GATGTCCTCAC------------------CAACTGCTTCAAAGCTTCCATTCTTCTCTCGTAAAGTGGATGACGTTGGCGCCAAATCAATGATCACTTCGT------------CGAACGTTGTCTCTATATCCGTGAAAGCTCCAGCTTCAAACCGGATTTACTCAAACTGTGAGTC----------------AGAT---ATTTCTCAg--------caattggg-a-aaaaaaagaagatggagtG--CTCAAATATTTAC
i caePb3.Scfld02_0      C 0 I 206
s caeJap4.Scaffold18194  536765 333 -   823664 cagcggtcgcaaacaccgtgttcAAATACGATAACACCTCATC-----------CCCATACATTGAAAAGAGCCCGGTG---AGCAACAATCTCTGGAAACGAA---TGAACAG-----CAATAGTG-CA---CCGGAGACG---GT------------TGTTTCCTCGC------------------CGACAGCCTCGAAACTCTCGTTCCTTTCTCGTAAAGTGGATGACGTCGGCGCCAAATCGATGATCAGTTCGCCGGCAGCTGCGACCAATGTGGTCTCAATATCCGTAAAGGCTCCCGTATCGAACAGGATTTACTCAAACTGTGAGTC----------------AGATATGATGTGATGA--------Gatgtgcg-a-aaaaaaaataattcaagtG--CACAAATATTTA-
i caeJap4.Scaffold18194 C 0 C 0

a score=-1297.000000
s ce10.chrX             3341426 9 + 17718866 ACATCAGTT
s cb4.chrX              8424464 4 + 21540570 -----AACT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   487944 4 -  4500979 -----AACT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   601132 8 - 33334924 -CTATGATT
i caeSp111.Scaffold629  C 0 I 178
s caeJap4.Scaffold18194  537098 7 -   823664 --ATTAGCT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1766311 206 +  4147112 I

a score=1040.000000
s ce10.chrX             3341435 4 + 17718866 GGCA
s cb4.chrX              8424472 4 + 21540570 TGCA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   487952 4 -  4500979 GGCA
i caeRem4.Crem_Contig0  I 4 C 0
s caeJap4.Scaffold18194  537105 4 -   823664 AACA
i caeJap4.Scaffold18194 C 0 I 227
e caePb3.Scfld02_0      1766311 206 +  4147112 I
e caeSp111.Scaffold629   601140 178 - 33334924 I

a score=-2256.000000
s ce10.chrX             3341439 36 + 17718866 CGGTTTTCGTTGTCTTCAAATTTAGGATCAATTAGT-------
s cb4.chrX              8424476 20 + 21540570 C------------TTTCTA----AAGCTGCGTTAGt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   487956 39 -  4500979 CAAGTTGagaggttttcag----aaaattcataaTTGATTTGT
i caeRem4.Crem_Contig0  C 0 I 150
e caePb3.Scfld02_0      1766311 206 +  4147112 I
e caeJap4.Scaffold18194  537109 227 -   823664 I
e caeSp111.Scaffold629   601140 178 - 33334924 I

a score=781.000000
s ce10.chrX             3341475 145 + 17718866 -TGAAATCTTTTTCGTCTAGTACTGTGATCACTCATATATT------CTCAAAAATCAACCGGATTTTCAAAAATGTTGAATTAAATTTTCA---AATCTTAA---CTTCAAATTTTCATTAATTTATTTATATAC-TTTGCAAAGTAA-CAAGTTTTCT
s cb4.chrX              8424496 153 + 21540570 atgaaattttct--gtttaaaattt--gtaaatcATAAATTAGATCTCTCAGTATCGACACAAATATCCTTATTTGTTG---TCATTTTTTAGTCAATGGTAATTACCTCAAATTTCTGCAGATTTGGTTAGATGCGTTTGAAAAGTTATCAGGTCCACt
i cb4.chrX              C 0 I 210
e caePb3.Scfld02_0      1766311 206 +  4147112 I
e caeJap4.Scaffold18194  537109 227 -   823664 I
e caeSp111.Scaffold629   601140 178 - 33334924 I
e caeRem4.Crem_Contig0   487995 150 -  4500979 I

a score=0.000000
s ce10.chrX             3341620 212 + 17718866 AGCTCAGTTCACTATTTGGTACCTCACTGAACATGTTTTACCACAAACCTGTTCGAttaaaggacaagtagcgccaacggggaaactgttaaaaaccactcatatgatgccagtacttttcaaaatgatttttgaaaacatttttattgagaatcaaaaagtggcaattactatgttttgccactttttgaaaaaactattacactgtcgca
e caePb3.Scfld02_0      1766311 206 +  4147112 I
e caeJap4.Scaffold18194  537109 227 -   823664 I
e cb4.chrX              8424649 210 + 21540570 I
e caeSp111.Scaffold629   601140 178 - 33334924 I
e caeRem4.Crem_Contig0   487995 150 -  4500979 I

a score=-2339.000000
s ce10.chrX             3341832 349 + 17718866 ttttcgaattccaacaacatttgaatattaatatttgaaacataagtagaccata-------aaattcgaaggaaattttttttgatcgatgacttccaaaaaagtggcaaaaattgagtaattTGTGAAACAAAATAAAAAACTTTTGAAAAATTGTTGAAAAGTCTGGCAATATTTGTTGCCT--TAATTTATAACATTTTTACTAAATTAGGGTCACTTTCTATCTTTTGAATAATAATAATTTTTTTGAATAAGGCGGTATTAGGCGTACAAATTACTTTAAACGATTTGTGTAGAGATTTTTGAAGCAAAAGTTTCAAGCTCCCAAGGAGCATAATGTTTAGAATTTAAATTG
s cb4.chrX              8424859 244 + 21540570 TTGTTCACTTCACTAAACTTTTCAATattact--ttaaaaaatctacttACTATACTCTCAGACAtccaaagttgactattttttactga-------------aatagataaaatcaa--aatttaccCGATCTAGCACAGATC----------------AAACGTTTCTTCTTGTGTATTACCTGCCAATCTGGAACATTTCGAT---------ACCATCTCCTCTCATTT-------------CTCTTTCA------------------------------TAAACATCGTGTTTACAACT---------------------CTGCCAACAAACTGAAT--------Tgtaaaatg
i cb4.chrX              I 210 C 0
e caePb3.Scfld02_0      1766311 206 +  4147112 I
e caeJap4.Scaffold18194  537109 227 -   823664 I
e caeSp111.Scaffold629   601140 178 - 33334924 I
e caeRem4.Crem_Contig0   487995 150 -  4500979 I

a score=-1190.000000
s ce10.chrX             3342181 59 + 17718866 AAACACGCGAATTCAATAATATTTACAAATAAAATTTGTCAACA--------------GCATTACCTTTTTTT
s cb4.chrX              8425103 30 + 21540570 aaac----------aaaattgCTTATCAATG----TTGCCAACG-----------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1766517 56 +  4147112 AAAC------------GCTTGCTTACAAATA-----TGCCAACAACTAAATGCGAACTGCATAAcggttttct
i caePb3.Scfld02_0      I 206 C 0
e caeJap4.Scaffold18194  537109 227 -   823664 I
e caeSp111.Scaffold629   601140 178 - 33334924 I
e caeRem4.Crem_Contig0   487995 150 -  4500979 I

a score=-793.000000
s ce10.chrX             3342240 14 + 17718866 ---TTGTTTTTGTTTTT---
s caeRem4.Crem_Contig0   488145 14 -  4500979 ---TTGTTCTTATCTAT---
i caeRem4.Crem_Contig0  I 150 C 0
s caePb3.Scfld02_0      1766573 20 +  4147112 tatcaaataCTATCAATTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  537109 227 -   823664 I
e cb4.chrX              8425133  0 + 21540570 C
e caeSp111.Scaffold629   601140 178 - 33334924 I

a score=-10649.000000
s ce10.chrX             3342254 101 + 17718866 ----------------TTTCTTA------TCAACTCTCTTGCGACTAGCA--TTGAAACCAACACT---TTACTCGTCGGTTC----------CCCAGT---TTTTCA--CCACTTCAAAAAATTTTGTGGAGGCCAAC-GGCG
s cb4.chrX              8425133  75 + 21540570 -----------------------------CTTTC----TGCCGCCCTACA---TGGAACCGGCACT--------------CCTACTTCT-ATTCATAATCTACCCTTT--CTGCCGGAAAA---------------ACA-CCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488159 118 -  4500979 ------------TTAGTTgctaactcattttttcacgtttccaCCCAAAGTGTTGGAACCAACACTTTCTTTCTT-CCGCTCCACTTTTCGTTCATAAT---CCCTCA--CTGTCGAAAAACATTC-------ACCACA-CTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   601318 122 - 33334924 TTTCTTATCAACTTTGTTGCTGAA-----TTCACAcgttttcattcgatt--ttgGAACCAACACC---TCACTT-CCGCTTCACTTTCTGTTCACAAT---TCCCTTcacaacagaaaaacaatt-------gccAAT-ACAG
i caeSp111.Scaffold629  I 178 C 0
s caePb3.Scfld02_0      1766593  92 +  4147112 ---------------GTTGCTAAC-----TTCACACGTTTTTACTCGGTT--TCAAAACCTACACC---TCATTT-CCGCTTC--------------GT---TCCctt--caacagaaaaacaatt-------gcCAATGACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  537109 227 -   823664 I

a score=71050.000000
s ce10.chrX             3342355 275 + 17718866 CGAGT-AAAT-------CGAACAAAACCAGTAG------ATATAATTGACAAAATTGACT--CAATGTATTGTCGATCGATGC--------ATTGCAGACCAGATGTCTCCACACAACAGGGGTCTCGAT------------TCCTTATATTGCCTTTTCCATTCAATTTCTCCATGTGCATTGTGCCGCCCACGGTCACAATAAG------ACATCACGAT---------------------TTTTCTCGAATGTTGTTTCGACACCCCCA---------------AAACC-CCTCTACAGGTCTTTGTGTC-GATTGGCG-----------------CCCACGTTTTGAACAATTCTTC----CTTGATTGAGT
s cb4.chrX              8425208 312 + 21540570 CTAGTCTAGC-------T--ATGGAACCAGTAGATACATATATAATTGACAAAATTGACTCCCGTCGATTGTC--GTCAACGCcagcgaaaaaaagagaccaGATGTCCCCCC-------GGGTCTCAAT------------CTCTTTTCTTTGATTCCTTATATG----TGGGTGGTGCAATGTGCTAT------ATACAATAGGACAGGCACACAATgatttccat-ttctt---ttca--ttttctcgaaAGTTGTTTTGACACCCCCTACCGCG------ATGAAAAC---------GGCCTTTGTGCCCGATtcatgaaagaaaaagagaggaatGCACGTTTCGAACAATTCCGC---ACTTGATTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488277 293 -  4500979 CCGCT---GC-------TGAATGGAACCAGTAG------ATATAATTGACAAAATTGACT--CATTGTATTCT--GTCGACGCC-------AAAAAAGACCAGATGTCTCCATACA--GGGGGTCTCAATTCCATGTC---CTTctcctttttgatttttcttgtg----CATTTAGT-------------------CACAATAGG------ACATCAcgatttccat-tttctcgattcc--ttTTCTCGAAGGTTGTTTTGACACCCCCAACTGCG------ATGAAACCGCC---GCAGGTCTTTGTGCC-----GATGGACGGTGAGTGAGGGCGCTCACATTTTGAACAATTCCTC----TTTGATTGAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   601440 319 - 33334924 CTAGTGTGGG-------CGAATGGAACCAGTAG------ATATAATTGACAAAATTGACT-CCATTGTATTGC--ATCGACAGC-------AAAAAAGACCAGATGTCTCGCCCCAACGGGGGTCTCAATaccatttc-----tttcatttttatttcttcttttgattctctcTTGTGCAATGTGCCTTTTTC-GTCACAATAGG------GCATCacgatttccatttttctcgattccGATTTTCTTGAAGGTTGTTTTGACACCCACAATTGAG------ATGAAATC-CC---GCAGGTTTTTGTGCC-GATTGACGCCGGGAAGAAGAGGTTACTCACGTTTTGAACAATTC-----------ATTCAAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1766685 322 +  4147112 CTTGTGTAGGAGTGAGTCGAATGGAACCAGTAG------ATATAATTGACAAAATTGACT-CCATTGTATTGC--ATCGACG---------CGAAAAGACCAGATGTCTCCACAACAGGGGGGTCTCAATaccatttctttcttttcatttcgtttttctcttttgatttttccttgtgcaatgtgcctttttc-ATCACAATAGG------ACA--------------ATTCtcgatttccattttcttgaaGGTTGTTTTGACACCACCAGCTGCG------AAGAAATC-CC---GTAGGTCTTTGTGTC-GATTGGCGCCGG---GTATGGGGTactcacattttgaacaattcctCT-TCTTTGATTGAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  537336 257 -   823664 CGACAAAATC-------TAGACAAAACTAGTAG------ATATAATTGTCAAAATTGACT--CATTGTGTT----GGCAGCACTGGGGG--GCGCAAGACCAGATG-------------------TTAAT------------ACCTCTTTTC------------------TTGCCTGTGCACGACACTAC-------CACAATAGG------ACAT-------------TTTGCCTCTTTTCATTTTCTCGAAGATTGTTATGACACCCCCAACTGCGCGTCCAAACGAATT-TC---TCCGGCTTTCCTCCT-CCTCAGAA------------------TCATTTCTTTTACGTTTTCTTTCTCCTTTATCGAGT
i caeJap4.Scaffold18194 I 227 I 27

a score=2282.000000
s ce10.chrX             3342630 21 + 17718866 ATGTCTTCGGCCTAGTA-GCGT
s cb4.chrX              8425520 14 + 21540570 ------TCGTCCTACAA-GCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488570 13 -  4500979 -------CGGCCTACTA-GCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   601759 18 - 33334924 --GTCTTTGCCCTACTa-gcc-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1767007 19 +  4147112 --GCCTTTGGCCTACTAGGCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  537593 27 -   823664 I

a score=7738.000000
s ce10.chrX             3342651 108 + 17718866 TTGGTCATTTGATACTTTCCCTTGT--AGAAAGG---ATGTAGTTGTGGAAAC--TTAT----AATCCTCAACTT-------TCAGTTT--------------CAATTTATCG-------CACCTTACAA----TAATC------TGAGATAATCGC
s cb4.chrX              8425534 130 + 21540570 TTGGTCATTTGTTACTTTCGCTTGT--GTGGTAG---AAAAACGTGTAGCAACAAATTC----GACTCCTTTTTTGAT----TCGGTTT--------------TGGTAGAATACTCCCTCTTTTTCTCAGCGGTTAATCTGACATTGAGATAATCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488583 114 -  4500979 CTGGTCATTTGATACTTTCCCTC-------------------CATGTAGgaac--tttc----aatttctctaCCGTTC---CCCGTTT--------------TGGTATTGTAACCACT-GACTTCTCAGCAGTTAATCTGACATTGAGATAATCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   601777 122 - 33334924 tttttcatttgaaactttctctcgatgaaattataaaaaagagatgcAGCAAC--TATTGGTgaattctct-----------tccattt--------------cggTTAAATAaccag--aaattttcaatggtTAATC------CCATTTAATCGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1767026 138 +  4147112 TTGGTCATTTGATACTTTCTCTTAC--AAATTCT---AAGGAGAAGTaccaac--tttc----aattttcccctCATACAGATCCGtttttttATCCGCTTtacttttgaaagaagag--gTATTCTCAAAAGTTAATC------TTCGATAATCGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  537620  91 -   823664 TCGGTCATTTGATACTTTCCCTCA-------------AAAAGGATGTAGCAAC--tttc----a------------------ttcgttt--------------ttttttctaa-------agtttCTCACAAA--ACCC------AGAGATAAtcgc
i caeJap4.Scaffold18194 I 27 I 19695

a score=2458.000000
s ce10.chrX             3342759 6 + 17718866 ATCTTG
s cb4.chrX              8425664 6 + 21540570 ATTTCG
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   488697 6 -  4500979 ATTTCA
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold629   601899 6 - 33334924 ATTTCC
i caeSp111.Scaffold629  C 0 I 10
s caePb3.Scfld02_0      1767164 6 +  4147112 ATTCTA
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18194  537711 19695 -   823664 I

a score=-6893.000000
s ce10.chrX             3342765 52 + 17718866 GTTAGAAAATTTGAA----TCCCCATTTT----TCTTCATCGTTTTCACCAGCAGTACAC--------
s caeRem4.Crem_Contig0   488718 49 -  4500979 --GACAAGAAAcgta----tatattttta----ttccc-----ttttttcgac----ctctatttttt
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   601915 51 - 33334924 TCGACAAAATACAAAAGGTTATAAGATTTTATATTCAC------AATACCAGC----CACT-------
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0      1767180 40 +  4147112 ttttcgaaa-acaaa----tttatgattt----ttctc--------tACCAAc----catc-------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e cb4.chrX              8425670 58 + 21540570 I

a score=8959.000000
s ce10.chrX             3342817 146 + 17718866 --------ATTGTTCTATTT---TTTTGCATATACTAGTTTTAGTTATAGTCCCCCATTCAGCAAATAATC-----------------ACCGTTTGGTG---TACTGTTAGGTGAGACAGAGATA----AAAGTTA---------GTGCGAC--TGTGATGAGTAAAA----CTGGTTGGTTTG--------TTTTGGAAATTG--
s cb4.chrX              8425728 152 + 21540570 --------ATTGCTGAAATC---TCTCAGAAAGACCAGTTTCAGT------------------------CCAAATCGTAAGAGTTTTGACCTTTTAATG---TACTG-TAGGAATGAAGAAAACATAGTGACAGGAACCGATAGTGTGAGACCTTGCAATGAGTAATT----AT-TCCaattat--------ttttgtcatttA--
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   488767 142 -  4500979 --------attg------tt---cctTACCAAGACCAGTTTCAGTA---------CGATCAG-------TCAATACGTCGGAGTTATGACCTTTTAGTG---TACTGTTAGAAACAACTAAGACA----GAAGGGAAT---GAGTGTGGGAC--TGGAATGAGTAAGA----A---CTGTTTTT--------TATTGTAA--TA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   601966 157 - 33334924 A-TTTTCTATCA------TC---TCTTCCCAAGACCAGTTTCAGAT---------TGATCAGCAAATAATTGTTACGTCGGAGTTATGACCTTTTTGTG---TACTGTTCAGAACGACTTAGATA----GAATAAGA--------GTGTGAC--TGTGATGAGTAAACTTAAA---TCGGTTTT--------TATTGTAC--AATG
i caeSp111.Scaffold629  C 0 I 153
s caePb3.Scfld02_0      1767220 173 +  4147112 acttttttattg------tcCGTCTTTCCCAAGACCAGTTTCAGAT---------TGATCAGCAAATAATCATTACGTCGGAGTTATGACCTCTCGATGTACTACTGTTCAAAACGAGTAAGACA----GCAGAAAAT-GAATGTGTATGAC--TGTGATGAGTAAAA---------CAGTCTTGTACTCAATATAGAAC--TATC
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194  537711 19695 -   823664 I

a score=-9962.000000
s ce10.chrX             3342963  96 + 17718866 TTTCGCatatttaaaaaagaataaaaacaaatgtt-------------atctaaaacattttttaaatatttttatggtaa-----------------aatttgaaattttgtttttatttcaaaa
s cb4.chrX              8425880  65 + 21540570 ------------GAACCATAGTTTAG-------------------------------TTTAGCAAGACCTGTTTTTTACA------------------AATCTTCTAGCTTGAAGCGAAGTCGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488909  64 -  4500979 ------------AGACCAaagacaaaataaaaata-----------------agaactcCAATGAgaagtgttttt----------------------atttttaaaatctgtag-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1767394 121 +  4147112 TTTC-----TGCAAATTagtgttggaaaaaaattcgatggTGCAAGCACGCTAGAACATCAGTTAGCTATGATTTTTCTACCCGTTCAAATGgaaaggattttttgaatttgttttttttttggaa
i caePb3.Scfld02_0      I 1 I 78
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e caeSp111.Scaffold629   602123 153 - 33334924 I

a score=98.000000
s ce10.chrX             3343059 15 + 17718866 atag---tttttttCAGT
s cb4.chrX              8425945 18 + 21540570 AAACATTATATTTTGCGc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   488973 11 -  4500979 -------gttttttcagt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1767515 78 +  4147112 I
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e caeSp111.Scaffold629   602123 153 - 33334924 I

a score=-545.000000
s ce10.chrX             3343074 438 + 17718866  
s cb4.chrX              8425963 493 + 21540570  
i cb4.chrX              C 0 I 172
e caePb3.Scfld02_0      1767515  78 +  4147112 I
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e caeSp111.Scaffold629   602123 153 - 33334924 I
e caeRem4.Crem_Contig0   488984   0 -  4500979 C

a score=0.000000
s ce10.chrX             3343512 117 + 17718866 ttatCTTAAGTACGGTCAAAGTCTTCCTAGTTGACGGATTTTTAATCCATGCACATAGAGTTCTAGGCTTCAAACCAAATTACAGTTTTTAAATTGAAAGTTTGTAATATTTTCAAA
e caePb3.Scfld02_0      1767515  78 +  4147112 I
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e cb4.chrX              8426456 172 + 21540570 I
e caeSp111.Scaffold629   602123 153 - 33334924 I
e caeRem4.Crem_Contig0   488984   0 -  4500979 C

a score=321.000000
s ce10.chrX             3343629 68 + 17718866 ATTTTAAAACTTTTTATTTCTCAAAAACTTTGAT---------------CTTCAATGCTG--CTTGTGTCCAAATCACCCGCCAT
s caeRem4.Crem_Contig0   488984 85 -  4500979 gttttgcAACTCTTTgccaaacacaaaaattgttttaccGGtttttttCCTTTAGTACTAGTTTTACATTTAGATCTTGCTCTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1767515 78 +  4147112 I
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e cb4.chrX              8426456 172 + 21540570 I
e caeSp111.Scaffold629   602123 153 - 33334924 I

a score=-389.000000
s ce10.chrX             3343697 14 + 17718866 TTTTCCTGGTAATC
s cb4.chrX              8426628 13 + 21540570 TTTTCCTCAAATT-
i cb4.chrX              I 172 C 0
s caeRem4.Crem_Contig0   489069 13 -  4500979 -TGTTGTAATATTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1767515 78 +  4147112 I
e caeJap4.Scaffold18194  537711 19695 -   823664 I
e caeSp111.Scaffold629   602123 153 - 33334924 I

a score=-4065.000000
s ce10.chrX             3343711  4 + 17718866 TG--------------TC---
s cb4.chrX              8426641  2 + 21540570 ----------------CT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   489082 18 -  4500979 GGATGAACAGTCTATCTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  266937  4 +   823664 -----------------TGGC
i caeJap4.Scaffold18194 n 19695 C 0
e caePb3.Scfld02_0      1767515 78 +  4147112 I
e caeSp111.Scaffold629   602123 153 - 33334924 I

a score=116133.000000
s ce10.chrX             3343715 371 + 17718866 GGCAATCTATTCTCGAAATCAATTCAA-TAACCC--TC-GAACACAGAG----------GTTGTACACTCATCC--CTCTCTCCCTCGCAGATAAACATCATTCT-----ATCGG-----------------------GAGAGAAAAGGGGTGTCATCCGCACTGTTTTAGTATATACTCGTGTTTTCGCGCATCCG------T-CCGTCCTCCTCTTCCTTACACACGCCGCGCTCTACTTTACTCCACCT-CACTGTCTGCCTGTTACCTAGGGTGCCTCTAATCTGAAACTGATAGCCATC-GGTTCATTTCATATGCC--GAATTG-------ACCGCCGCCT-CGTTTTCTTGTCAAGGACCAC-----GTGTGTAAT------GTAATGCGATTTGAT--GCGTTTCTGTCCCCCACGGTGGGTCACTTGACATTCATT--TT
s cb4.chrX              8426643 339 + 21540570 GGCAATCTATCCTCAGGATCCCGTCGGTTAACCC--TCAAAACATCGGGAT------GTTTTGTACACTCA----------TCCCTCGCAGATAAACATCATTCATAGTCATCGGAGGGGACCGAAAAGGAatagagaaggagagagaggGTGTTATCCTCACTGTTTTAGTATATACTCATGTTTTCGCGCATCCGATAGAGT------------------------TCCCTTTTCTGCCCTCTTCTACCT-------------------------ACACCCAGTCTGTAAATGATAGTCATC-GGTTCATTTCATATGCCCGGGAATAGGCAACAAAAGATTCTC---GA----TTTCAAAGACCGC-----ACGTGTGACAT-----TGATGCGCACTGTT--T-------------------GGGTCAGTTGACTTTCC----AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   489100 368 -  4500979 GCCAATCTTTTCTCGAGATCCCGGCGG-TAACCC--TC-AAACATCGAGGTTGA--GATGTTGTACACTCATCC----CT-TCCCTCGCAGATAAACATCATCCG-----ATTGG------CCGAAAAG-------------GAGAGAGGGTGTCATCCTCACTGTTTTAGTATATACTCGTGTTTTCGCGCATCGGGTTCGTTTTTGTCCTCATCttgtcttctttcttctttttctacctCATTTTACCT-CGTCGGAGGTG-------------ACA-CCAATCTGTAATTGATAGCCATC-TGTTAAATCCATATGCC--GAAATGGAAAAC----GACCCCC---TAGTCTTGTCAAGGACCAC-----GTGTGTAATGC----GTGATGCGATTTGAT--TTGTCTTGAC------TGTGGGGTCATTTGACTTTTA----AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   602276 374 - 33334924 GGCAATCTGTTCTCGGGATCAGTACTG-TAACCCCGTC-AAACATCGAGGTTGA--GATGTTGTACActcatcctcttctcctcctcgcAGATAAACATCATCCG-----ATTGG------CCGAaaag---------gagaggaagagggTGTCATCCTCACTGTTTTAATATATACTCATGTTTTCGCGCA-----TTCGTT-TTGTCCTCACTCTg---------cctctcttctttct--ttttacct-aaacacacacacatactc------CCATAAAATCTGTAACTGATAGTGATC-GGTTCATTTCATATGCC--GAGATGTAAAATGACCGTCGCCCACCTAGTCTTGTCAAGGACCAC-----GTGTGTAAT------GTGATGCGATTTAAC--CCGACAG---------TCTTGGGTCATTTgacttttctt--at
i caeSp111.Scaffold629  I 153 C 0
s caePb3.Scfld02_0      1767593 366 +  4147112 GGCAATCTATTCTCGAGATCACTCCTG-TAACCC--TC-AAACATCGAG----------GTTGTACACTCATCC----CTCCTCATCGCAGATAAACATCATCGG-----ATTGG------CGGAAAAG---------GGGAGAAAGAGGGTGTCATCCTCACTGTTTTAGTATATACTCGTGTTTTCGCGCATCGGGTTTGTT-TTGTCCTCACACTGTCT------TCTCACTCCTCCCT--TTCTACCTCAAGTTGAGGCG-------------GCATTGAATCTGCAATTGATAGCCATCGGGTTCATTTCATATGCC--GAAATGTAAATGGGAGATAACCC-------TTTGT--AGGACCAC-----GTGTGTAATTCGTCAGTGGTGCGATATAAT--TCGACTTGACC-----GTTTGGGTCATTTGacttttctttaat
i caePb3.Scfld02_0      I 78 C 0
s caeJap4.Scaffold18194  266941 304 +   823664 AACAATCTGTTCACGAGATCATCTCGC-TAACCC--TT-AAACACCGAGGTTGGGTGGCGTCGT-------------------CGTCGCAGATAAACATCA---------GGCGG-----------------------GGGGCCCAAAGGGTGTCA--CTCACCGTTTTAG--TATACTCGTGTTTTCGCGCACGCATCGCCTC------------------------GCCCCCCTCATCTT--CTCGacct-------------------------ttttctgttttgcAATTGATAGCCATT-GGTTTAGTTCATATGCA--G------------ATGACCGCTT---------GGTCAAGCACCACCAGGGGGGTGTAAT------GCAATGCCATTTGACAGTTGCTTTGTCAGTTGCAGTTG---CAGTTGACATTCAGT--TT
i caeJap4.Scaffold18194 C 0 I 24

a score=-6435.000000
s ce10.chrX             3344086 23 + 17718866 ATCCATTGTTGC------------------------------------------------CAGTTG---GAAGC
s cb4.chrX              8426982 62 + 21540570 CTTC-----TACCCATCCGTTGCCGTTTCAAAAGTGG---TTTTGTCTA----ATGATTCCAGTTGAACAAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   489468 70 -  4500979 TTTC-TTGTTGCCTATTCCTATTCTTTTTTGGGTTTGTTCTTCTGCCTACAGGCCGCTGCCAGTTG---GAAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   602650 60 - 33334924 tttccttGTTGCCTA----------TTCTTTATTTGGGTTTCCTGT-TACCTTCTAATGGCAGTTA---GAAGC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1767959 42 +  4147112 ttttcttgtttcc-------------tctTCATTTGGTTTTCCT----------------CGGTAG---GAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  267245 24 +   823664 I

a score=3071.000000
s ce10.chrX             3344109 227 + 17718866 -CCAATCATTTC-AA--CCTTCTCA-TGTCCTTTTTAAGCATCCAATTCTGGGAACCT---TGGTCGGCCATTT---CT-TTTT-----GATGTCTTTTATC--AGAATCACACACACACACACATAACTTTTTCCTGTTATATTCGTCTGTT-GAACTT-GGCAAATA---------TTCTTTGTAATGTTAA-------------------------------GTTGATTTGTCGTCGTT----TTCTGTTCCCA------CGTTCTGAGTGCTGGAATGGTCTC--------GGGCTTTTTTA
s cb4.chrX              8427044 190 + 21540570 -CAAAATTTTCC-CAAGCCCATTCA-TTTCCGTCC-----------CTGTGTGAACGT---C-GATggcc--tt---ct-ctttttccaaatgTCCTTTATC--AGTATCAT-----------------------------TCTACGTTAACT-GAACTT-GGCAAACACTTCTTTTCCTCCATTCATTCATT--------------------------------TTACGTTCGtctttttttggagaataGACCAA------GTTTTAGA------------TGT---------AGGCGTTTTTT
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig0   489538 206 -  4500979 -CGAGACCTTCT-CATGCCCATTCA-TTTCCGCTTTGTAGACCAAATTCTGAGAACGG---CGGGTGGCCA-TT---CG-CTTT-----AGTGTCTTTTATC--AGAATCAC----------CTCTAACG-----------TTTTTGTCACTC-AAACTTAGGCAAATA------TTCTTCGATTCAATGTTT--------------------------------TGTTGGCAAACTTTTTT--GGTCTTCGTTCAactctctatttttga------------tctc--------aaaTGTTCCTC
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629   602710 203 - 33334924 -CAAGACCTTCT-CATGCCCATTCGTTTTCCGCTAAAAGACCCTTTTTCTGAGAACGT---CGGTCGGCCA-TT---CGTTTTT-----AATGTCTTTTATCAGAGAATCAC----------ACACAACGGTTT------TTCTATGTCAGCT-GAACTT-GGCAAACA---------CTTATTCCTATCTTCA-------------------------------GTTGGTGAAATTTCTCG----TCGtcgttcaa------tttttttt------------gtt---------gggtCTTTTTC
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1768001 197 +  4147112 -CAAGACCTTCT-CATGCCCATTCA-TTTCCGCTAAGAAGACCCAATTCTAAGAACGTCGGCGGTCGGCCA-TT---CG-TTTT-----AATGTCTTTTATCAGAGAATTAC----------ATATAACGTTTTT---TATTCGAAGTCAGCT-GAACTT-GGCAAAta---------cttcattcattcttt--------------------------------ttttgtcagacGCTTTG------gtcgttcaa------tttttt----------------------------gcctctttt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  267269 248 +   823664 CCGGTGCCTGCTGCCTTCCCTGTTG-TTTCCCATGCAATAATGTGATGGCCTAACCTA---CAAGCGGCTA-TTTGCCG-TTTT-----AGTGCGTTTTATC--AGAATCAT--------TCACATAACGTT---------TCGTCGTTTGTTCGAACTT-GGCAAATA---TATTTATTCGATTTCGCGTTGATAGACGGGTGGGAAGAATGAAAGAAACGTCCAGACGTCAGTGGTTTCC------ACAATTTCA------TTTTCCAC------------TGGCATGACCAACAACCCTCTTC
i caeJap4.Scaffold18194 I 24 C 0

a score=-18618.000000
s ce10.chrX             3344336 65 + 17718866 AGCTTTATAAAAAATGTTTTTCCTTTAAATCTGT---TTTTTTAATCTTGAATT---TAGACA--------------------CTTAAAGT---
s caeRem4.Crem_Contig0   489757 71 -  4500979 aaattgaaaaaaagttttgcacaTTACTCTACATGGGAGGTTCATTATTTCATTAAGCTGTTA--------------------GACAAGAG---
i caeRem4.Crem_Contig0  I 13 I 1
s caeSp111.Scaffold629   602914 73 - 33334924 ------------AGTCTCTT---TTTAGCTGTATGGGtggtcaaaaattgaata---ctGTAAAAAATTGCTTCTAATGACCTTTTAGAGT---
i caeSp111.Scaffold629  I 1 I 1
s caePb3.Scfld02_0      1768199 37 +  4147112 ------------aatttc-------------------cagttcTAGATTGGCTT---TTGTAG--------------------TCCAGGAG---
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18194  267517 55 +   823664 ----------------TTTTTCGTTGCTTT-------TCTTTTTAGTTAGAACT---TTCTGA-------------TTGTCTGTTCATGAATCT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8427234 85 + 21540570 I

a score=331266.000000
s ce10.chrX             3344401 726 + 17718866  
s cb4.chrX              8427319 806 + 21540570  
i cb4.chrX              I 85 I 1119
s caeRem4.Crem_Contig0   489829 782 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   602988 745 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1768237 773 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  267572 826 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7694.000000
s ce10.chrX             3345127 110 + 17718866 CGAGTGCCAGAAAACTTCGAATTACGCCGTAAACAGCAAGTGAAAGCCCTTTTCCGGATACA----TGGAAG---------ATGTTTGAAATTTGCTG--------TTGCTTTC-CTTGATTTTTAT-----CTAAA
s caeRem4.Crem_Contig0   490611 105 -  4500979 ------CAAGAGAAAACAAGACTA----GTGAAAAGCAAGTGAAAGTCCTCTCCGGTATCCG----GAAAGGTGTTTGGTTTTGCTTG--ATGTGATG--------TTGCTTTA-ATTGTATCCT-------GTGAA
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold629   603733  96 - 33334924 CGA-AATGAGAG----------------TTGAAAAGCAAGTGAAAGTTTCTGAACAAATCCG----GAAACG---------CTGTTTG--GTGTGTTG--------TTGCTTTA-TTTGTGTCCCGTTTTAAATGAA
i caeSp111.Scaffold629  C 0 I 17
s caePb3.Scfld02_0      1769010 103 +  4147112 ----AGTGAGAGAAA-----TCTA----TTGAAAAGCAAGTGAAAGCCCTAAATCCGACCCGGAAAGAAACA---------TTGTTTG--ACGTGATG--------TTGCTTCATTTTGATTCCCGATTT--TTGAA
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18194  268398  76 +   823664 ----------------------TG----TT---------TTGAGAACTCTTAAT----TCCA----TAAATAGCTTTTAATGTGTTTA--ATTTGCTAAATTATACTTGCCGTG-CCCTTTC---------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8428125 1119 + 21540570 I

a score=156144.000000
s ce10.chrX             3345237 234 + 17718866 -----------TTTGTTGCATTTTGAGGTTCTATTGTCTTTTCAGGAGCCCACTAATGAGACCCAAAAGCTTGCAGAACCTTCCGCCACTAACATTGTTAATCAACAGGTGACGT--------------------GAGGAACAAAACAAGGCATAATGTTTA---------------------TGTG--CTTTCAGGATGAATCGGATGACAATTCCGACGGCGACAGTCGCGATGGTAACGACTCATATGACATCACGCCAATGCGTCCAAACTCTCTTGTGGTAAG
s cb4.chrX              8429244 222 + 21540570 -----------ctttttgca------------------ttttcaggaGCCCACTAATGAATCCCAAAAGCTCGCTGAACCTACCGCCACTAACATTATCGCTCATCAGGTACCTATTG-TAGCTTTTGTCGagccaaaaaacattttaaaatt------------------------------------attaaaggATGACTCTGATACCAATTCCGATGGCGATAGCAACGATGGCAACGGCTCCTATGACATCACTCCAATGCGTCCAAACTCTCTTGTGGTACG
i cb4.chrX              I 1119 C 0
s caeRem4.Crem_Contig0   490747 213 -  4500979 -----------ttccatGCA-------------------TTTCAGGAGCCCACTAATGAGTCCCAAAAGCTCGCTGAACCTTCCGCCACTAACATTGTTGCTCAACAGGTGATTTTTGATAG-------------AGGAttcaatataaaatt------------------------------tgtG--TTTATAGGATGACTCAGACGACAATTCAGATGGAGACAGTCACGATGGAAACGGCTCCTATGATATCACACCAATGCGACCAAATTCTCTTGTGGTTag
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold629   603846 218 - 33334924 -----------ATCCATGCA-------------------CTTCAGGAGCCCACTAATGAGACCCAAAAGCTCGCTGAACCTTCCGCCACTAACAATATTGCTCAACAGGTGACGTGTC-----------------AATTCACACTTTGACGCA--ACTTTTA---------------------TGTGTATTTTCAGGATGAATCTGACGACAATTCAGATGGAGACAGTCACGATGGCAACGGCTCATATGACATCACTCCAATGCGCCCCAACTCGCTCGTGGTGAG
i caeSp111.Scaffold629  I 17 I 2
s caePb3.Scfld02_0      1769128 217 +  4147112 -----------ATCCATGCA------------------TTTTCAGGAGCCCACTAATGAGACCCAAAAGCTCTCCGAACCTTCCGCCACTAACATTGTCGCTCAACAGGTGACGTCAG-----------------AAATAAGAGATTGAAGCA--ACGTTAA---------------------TGTG--TTTTTAGGATGAATCTGACGACAATTCAGATGGAGACAGTCACGATGGCAACGGTTCATATGACATCACCCCAATGCGCCCAAATTCTCTCGTGGTAAG
i caePb3.Scfld02_0      I 15 I 61
s caeJap4.Scaffold18194  268474 266 +   823664 TTGCTTTTCTAGACCCCGCA------------------ATTTCAGGATCCCACTAATGAGACCCAAAAGCCTGCTGAACCTTCCGCCACTAACATTGCTGTTCATCAGGTAAATCGTGAAAAAATTACAGGAA--AGTACATAATTGAAAAcattaattcaaaaataaaagcaCTAGAAACGGTTTA--ATTTTAGGACGAGTCAGATGACAATTCAGATGGCGACAGCCACGATGGCAACGGATCGTATGACATCACACCTATGCGTCCAAATTCCCTTATGGTTGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-4415.000000
s ce10.chrX             3345471 21 + 17718866 --------------TGTTCTAAATGaaataatttt-
s cb4.chrX              8429466 16 + 21540570 --------------TTGACAacaggaaa-----tt-
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   490960 10 -  4500979 --------------atttcaat-----------tt-
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold18194  268740 27 +   823664 TCATTTGACTTAAGTattcaatat---------tta
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1769345 61 +  4147112 I
e caeSp111.Scaffold629   604064  2 - 33334924 I

a score=-10.000000
s ce10.chrX             3345492 4 + 17718866 tttt-
s caeRem4.Crem_Contig0   490971 4 -  4500979 tttt-
i caeRem4.Crem_Contig0  I 1 I 83
s caeJap4.Scaffold18194  268767 4 +   823664 -ttta
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1769345 61 +  4147112 I
e cb4.chrX              8429482 37 + 21540570 I
e caeSp111.Scaffold629   604064 2 - 33334924 I

a score=-44.000000
s ce10.chrX             3345496 11 + 17718866 gtaaaatgaaa
s caeJap4.Scaffold18194  268771 11 +   823664 ttaacaTCATC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1769345 61 +  4147112 I
e cb4.chrX              8429482 37 + 21540570 I
e caeSp111.Scaffold629   604064  2 - 33334924 I
e caeRem4.Crem_Contig0   490975 83 -  4500979 I

a score=0.000000
s ce10.chrX             3345507 710 + 17718866  
e caePb3.Scfld02_0      1769345  61 +  4147112 I
e caeJap4.Scaffold18194  268782   0 +   823664 C
e cb4.chrX              8429482  37 + 21540570 I
e caeSp111.Scaffold629   604064   2 - 33334924 I
e caeRem4.Crem_Contig0   490975  83 -  4500979 I

a score=430.000000
s ce10.chrX             3346217 15 + 17718866 ctaccccacttttaa
s caeSp111.Scaffold629   604066 15 - 33334924 CTAACGCTCTTCAAA
i caeSp111.Scaffold629  I 2 C 0
e caePb3.Scfld02_0      1769345 61 +  4147112 I
e caeJap4.Scaffold18194  268782  0 +   823664 C
e cb4.chrX              8429482 37 + 21540570 I
e caeRem4.Crem_Contig0   490975 83 -  4500979 I

a score=-462.000000
s ce10.chrX             3346232 24 + 17718866 --TAATTTGAGCAGCAAACTTTTAGC
s caeSp111.Scaffold629   604081 26 - 33334924 tacaaatttgaaacaataaatttaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1769406 21 +  4147112 --tagttttctcacaaaattttt---
i caePb3.Scfld02_0      I 61 C 0
e caeJap4.Scaffold18194  268782  0 +   823664 C
e cb4.chrX              8429482 37 + 21540570 I
e caeRem4.Crem_Contig0   490975 83 -  4500979 I

a score=1390.000000
s ce10.chrX             3346256 7 + 17718866 AACACAA
s caeRem4.Crem_Contig0   491058 7 -  4500979 aatatga
i caeRem4.Crem_Contig0  I 83 C 0
s caeSp111.Scaffold629   604107 7 - 33334924 aaaacaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1769427 7 +  4147112 cacatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  268782 0 +   823664 C
e cb4.chrX              8429482 37 + 21540570 I

a score=964.000000
s ce10.chrX             3346263 2 + 17718866 AA
s caeRem4.Crem_Contig0   491065 2 -  4500979 ta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604114 2 - 33334924 aa
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0      1769434 2 +  4147112 aa
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18194  268782 2 +   823664 AA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8429482 37 + 21540570 I

a score=215257.000000
s ce10.chrX             3346265 226 + 17718866 TTTCAGTTCACCCGCCTAGCGAACGAAGAAGAAATGGGAGGTGATGGAAATGTGATCAGTCGCAGCCTTCTGTCCTTGGTGGCCGAAGAAGATTTGCCAGACTTTCTCGTTGCTCTCAACGAGAAGCCCATTCGATATGTAGTTGTTGAAGAATCAGAAAAGCCGAGTACTTCCAGCATACTCAGATCGAGAGATGCTAGAAAGGAAGAAAAGGTTCAGAAGGTGG
s cb4.chrX              8429519 226 + 21540570 tttcagtTCACCCGTTTGGCCAATGAAGAAGAGATGGGAGGTGATGGCAATGTGATCAGTCGTAGTCTTCTGTCCCTGGTTGCCGAAGAGGATCTGCCGGATTTCCTCGTTGCTCTCAACGAGAAGCCGATCAGATATGTTGTCGTCGAGGAAACTGAGAAGCCAAGCACCTCCAGTATTCTACGCTCCAGAGATgttcaaaaagtggaaaaagcGCCAAAGGTAA
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   491067 226 -  4500979 ttACAGTTCACCCGCCTGGCaaacgaagaagaaatggGAGGTGATGGTAACGTAATCAGCCGCAGCCTTCTATCTTTGGTTGCCGAAGAAGATCTGTCAGATTTCCTCGTTGCTCTCAACGAGAAACCCATCAGATACGTTGTCGTAGAAGAGTCGGAGAAACCAAGCACTTCAAGCATTCTCCGTTCAcgagatatcaaaaaagaagagaaagctCCAAAGGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604123 226 - 33334924 tttcagttcacCCGTTTGGCaaacgaagaagagatgGGAGGTGATGGAAATGTGATCAGCCGAAGTCTTCTGTCCTTAGTGGCCGAAGAAGATCTGCCAGATTTCCTCGTTGCTCTCAACGAGAAACCCATCAGATACGTCGTCGTAGAAGAATCAGAGAAGCCAAGTACTTCAAGCATTCTTCGTTCAAAAGATAtcaagagagaagaaaaagcttCGAAGGTGA
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1769443 226 +  4147112 tttcagttcactcGTTTGGCcaacgaagaagaaatggGAGGTGATGGAAATGTGATCAGCCGAAGTCTTCTGTCCTTGGTGGCCGAAGAAGATTTGCCTGACTTCCTCGTTGCTCTCAACGAGAAACCCATTAGATATGTCGTTGTCGAGGAATCGGAAAAACCAAGCACATCAAGTATCCTTCGATccagagatatcaaaaaagaggagaaagcTCCAAAGGTAA
i caePb3.Scfld02_0      I 7 I 30
s caeJap4.Scaffold18194  268784 226 +   823664 TTTCAGTTCACTCGCATGGCAAATAAGGAGGAAATGGCAGGAGATGGCAACATCGTCAGTCGCAGTCTTCTGTCTCTTGTAGCCGACGAGGACATTCCAGAATTTCTAGCTTCTCTCAGTGAAAAACCAGTGAAATATGTTGTCGTGGAGGAATCCGAGAAACCAAGTACATCGAGCATTCTCCGCTCACGAGATGTAAAGAAAGAGCCGAGATCTGAAAAGGTAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-4445.000000
s ce10.chrX             3346491 5 + 17718866 GTAGT--
s cb4.chrX              8429745 1 + 21540570 ----A--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491293 1 -  4500979 ----A--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604349 2 - 33334924 ---GA--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  269010 5 +   823664 --ACAAT
i caeJap4.Scaffold18194 C 0 I 32
e caePb3.Scfld02_0      1769669 30 +  4147112 I

a score=-3059.000000
s ce10.chrX             3346496 27 + 17718866 TGAG----AAGAATTAATCAATGACCAGTTC
s cb4.chrX              8429746 27 + 21540570 ACAG----TAGGGTTGTccgattttaaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491294 31 -  4500979 ACAGAATATGGGGAGCCACAGAAACTAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604351 27 - 33334924 CCAG----TGAAAATtgtgtctgaaaaattg
i caeSp111.Scaffold629  C 0 I 1
e caePb3.Scfld02_0      1769669 30 +  4147112 I
e caeJap4.Scaffold18194  269015 32 +   823664 I

a score=-1679.000000
s ce10.chrX             3346523 6 + 17718866 AACATG
s cb4.chrX              8429773 6 + 21540570 tatgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491325 6 -  4500979 TATTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604379 6 - 33334924 aaactg
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1769699 6 +  4147112 AAGAAA
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18194  269015 32 +   823664 I

a score=205449.000000
s ce10.chrX             3346529 427 + 17718866 TTTTCAGGGTTCCACGCGAATCAGATTCTGTACAGACAACGCTATGGCTTATGCGTATTTGGATGAAATTACAGCAACACGATCATTACAGTGGGATGATGGAACTGTCATCGAGTACTCATACTTTAAAGACTTAGAAGCTGCGGAGGAAGCCGCC---ATGGCACATAATGACCCGACATTGGCGTTGATTGAACAATGGGAGCAACAAATCGCAAACGATAATAGTAAGGAATTTTTATTTTCGATTCtaataataataataacaataataataataTTTATTCATGACACAAATAGAAACACAAAGAGAACAATTGTAGAAAGCCGATTCTAAAACAAAACTCAATAA--TTTTCAATTTCAGTCCACCCATTGACACACGATTTGACTTTCTCGGATAGTTGTCTAGA---AACATCTGCTGTGTAAGTT
s cb4.chrX              8429779 348 + 21540570 gTTTCAGGGAACTACAAGAATCCGTTTCTGTACAGAGAACCCGATGGCATATGCCTATCTAGACGAGTATACAGCTACACGGTCGCTTTCTTGGGATGATGGAACAGTCATTGAGTATTCTTACTTCAAGGACTTGGAAGCAGCTGAAGAAGCCGCT---CTATCCCATAATGACCCTACTTTGGCTCTGATTGAGCAATGGGAACAACAAATTGCGAATGATAACAGTAAGTA---------------------------------------CCTAAAATTAAT--GGGAaacaagtt-----------------------------------------caaaattcaaaa--ttcaagatttcagtTCGCCCACTCACCCATGATTTGGCGTTTTCCGATAGCCGAATAGAACCAACTACGGCTGTGTGAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491331 339 -  4500979 A-TTCAGGGAACAACGCGTATCCGTTTCTGTACAGAAAACCCGATGGCATACGCTTACCTCGATGAGTACACAGCAACCCGATCACTTCAATGGGATGACGGAACAGTCATAGAATATTCATACTTCAAAGATTTGGAAGCAGCTGAGGAAGCTGCTGCATTATCACATGGTGATCCAACACTGGCTCTAATTGAGCAGTGGGAACAGCAAATTGCTAATGATAATAGTGAGT----------------------------------------CATAGGATTAAt-------ataattta----------------------------------------taaaaatgattg--ttt---ATTGCAGTTCGTCCGTTAACCCATGATTTGACTTTCTCCGATAGTCGAATAGA---AACTACCGCTGTGTAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604385 332 - 33334924 aatttagGGAACAACTCGCATCCGATTCTGCACAGAAAATCCAATGGCATATGCTTATTTGGATGAATACACAGCAACTAGATCTCTACAATGGGACGATGGAACTGTTATCGAGTATTCttatttcaaagatttaGAGGCAGCAGAGGAAGCTGCT---TTGACACATAATGACCCTACACTAGCTCTCATCGAACAATGGGAACAACAAATTGCAAATGATAATAGTGAG------------------------------------------------TTtgt-------tcaaatag----------------------------------------aaaatatagaac--tttgaattttcagttcgtCCGTTGACTCATGATTTGACATTCTCCGACAGTCGACTAGA---AACATCTGCTGTGTGAGTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1769705 335 +  4147112 ATTACAGGGAACAACAAGAATCCGATTCTGTACAGAGAATCCAATGGCATATGCTTACTTGGATGAATACACAGCCACTAGATCTCTCCAATGGGATGATGGAACTGTGATCGAATATTCATATTTCAAGGATTTGGAAGCTGCTGAAGAAGCTGCA---TTGACTCACAATGATCCGACTTTGGCTCTTATTGAACAATGGGAACAGCAAATTGCGAATGACAACAGTGAG-----------------------------------------------AATTTT-------CCAATTCG----------------------------------------agaatttcaaacaaactaAAGTTTCAGTTCGTCCACTTACCCATGATTTGACATTCTCCGACAGTCGACTAGA---GACATCTGTTGTGTAAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  269047 332 +   823664 TTTCTAGGGAACGACGCGTATCCGATTCTGCACAGAAAACCCAATGGCATATGCGTACTTCGATGAGAGCACCGCCATTACGTCACTTCAATGGGACGATGGAACGATCATCGAGTATTCTTACTTTAAAGATCTTGAAAACGCCGA------------------------TGACCAAACGCTACAGTTAATTGAGCAATGGGAGCAGGAGATCGCCAACGATAATAGTGTGTTTTGCAT---------------------------------TGTAGAAACTAT---AGAAACAGATAGAT--------------------------------------AAATAACTAGtt--cttgaattttcagttCGTCCTCTGACCAATGACCTGGTTTTTGGTGAAAATCGACTGGA---ATCATCAGCACTgtaagtt
i caeJap4.Scaffold18194 I 32 I 376

a score=-13170.000000
s ce10.chrX             3346956 34 + 17718866 ----GTTACCCACCAAATAT--CTAA-ACTCAGTTATCAAT-----
s cb4.chrX              8430127 33 + 21540570 ---AAG----Ctcagaaaat--ttcg----gaattttttttttcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491670 34 -  4500979 ---GAAATTCTTCAAGAAACAACTTA----Aaatatattgt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604717 34 - 33334924 ---aatta--ttctgaatga--tCAGCATTAAAACatgcat-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1770040 40 +  4147112 TGGAACTATTTTTTggatgt--tcaa----aaattatgtttcgTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  269379 376 +   823664 I

a score=14996.000000
s ce10.chrX             3346990 218 + 17718866 TTTCAGGAGCTCTGCATACTGATGCACTCGGATCTCATCGT---TTTAAT-------TAAATGTCATCAATGTTCACACATTTGTTTTT-TCACCAAAATTGAGACACTATATTTC------------AA---TATGCTCC--CAATTTACTTTTTCCTCCCTGTCCAAAA-----------A---------TACTTTG-TTAGGTCTT------ATAAACCTTT-TTCCCTTT--CCTTTAA---TTATACTTT--TTCCT---TTGT--------------------TCCTGTCTCCTGTTG-
s cb4.chrX              8430160 241 + 21540570 tttcagaagctCTGTATACTGATGCGGCCGGATCTCATCTCACACCTAATCAAA--AGAATCGTCATGCAAATTTTCAACCTgttatttcttttc-------aaaacctttATAC-----------------------------------------TTCATCTCTCAATAC-----TATTTTCAACTGTCCTTATTTTG-TTAGGTTTTTACA--ACATTCTTCA-GTCCTCTcaatctttca---tttttcccttcTCCCTGTATTTATAGCTCCTcctgcttcttttttctgtctaTT-TCT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   491704 226 -  4500979 tttcagaagctCCGTATATTAATGCAGTCGGATCTCATCTC---CGTAAT-------AAACCGTCATCTAAA-CCCAAACCTGTTTATTATTTACTCATgcgaaatgctgaaaat-----------------------------------------tcttcCTTTCCAAAC-----TACTGTC---------TACTTTG-TTAGGtttttcaa--acatacttcctgtcccttt--tctttca---tttccttcaatttcct---ttttcaactcatctgttcgcttcttcctgtctatt-ttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604751 235 - 33334924 tttcagaagttctGCATACTGATGCGGTCGGATCTCATCAC---AGTAAT-------AAATCgtcat---ttttcctcttcttcctgtTATTTAccattgataaaaaatgaatttc------------aa------------------ttatttcttttccctgtaaaaag-----ttttctt---------tacTTTG-TTAGGTCTTCAAATTACAGTCAACT-GTCCCTAT--TCTTTCA---TCCCCTTTTATTTATC---CTGTCATTTTCCCTGCTTTTCTT-TCCTGTCAACT-TCT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1770080 246 +  4147112 TTTTAGAAGCTCTGCATACTGATGCGGTCGGATCTCATCTT---CCTCTT------GAAACCGTCATGAATTTTTCTACACCCGTTCTAATTTTCTGATCGAAAAGATTTAATAT-------------AA------------------TAATctctttccatttccaaaaaccttttttcttc---------tactttg-TTAGGT-TTTATACTACAGTCTTCT-GTCCCTAT--TCTTTCAGCTTTCTTCTTTAATTATC---CTGTCATTCTGTCCGCTTTTCCTGTCCTGTCCATT-TCT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  269755 242 +   823664 TTTCAGGAGCTCTGCATACTGATGTGGTTGAATCTCATATG---TCCATTCAAATCCAATCAGTCATTAATTTTATTGACTCTTTTATACTTTACAA-----GAAAACTTTACATTTTTGGTCATTGAAACCGTATATTTCAATAATtcacttctgtttttttttctaaaa---------------------tatgCTGAAAAAGAGCACAAA--ACTGTATTTA-TTCCCAAT--TCTCACT---TTCTCATCCTCTTTGT---CT----------------------TCCTATTTCCC-ACTG
i caeJap4.Scaffold18194 I 376 I 1200

a score=13938.000000
s ce10.chrX             3347208 29 + 17718866 GAACGATGTTCGAAGTTATTTGAATGAAA
s cb4.chrX              8430401 29 + 21540570 GAACGATGTTCAATTatatttgaatgaaa
i cb4.chrX              C 0 I 3563
s caeRem4.Crem_Contig0   491930 28 -  4500979 GAACGATATTCAATGATATTTGAATGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   604986 29 - 33334924 Taacgaaattcaaatatttttgaatgaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1770326 25 +  4147112 GAACGATATTCaa----tattgaatgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  269997 1200 +   823664 I

a score=-96.000000
s ce10.chrX             3347237 1 + 17718866 T
s caeRem4.Crem_Contig0   491958 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   605015 1 - 33334924 t
i caeSp111.Scaffold629  C 0 I 1407
s caePb3.Scfld02_0      1770351 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  269997 1200 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I

a score=903.000000
s ce10.chrX             3347238 16 + 17718866 GATTGAACACCTTTAT
s caeRem4.Crem_Contig0   491959 16 -  4500979 GTTTTGAGATATTTAT
i caeRem4.Crem_Contig0  C 0 I 1893
s caePb3.Scfld02_0      1770352 16 +  4147112 gttctaatttttgtat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  269997 1200 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   605016 1407 - 33334924 I

a score=284.000000
s ce10.chrX             3347254 14 + 17718866 CTTTAAAATTAAAA
s caePb3.Scfld02_0      1770368 14 +  4147112 tgtggaattcaaaa
i caePb3.Scfld02_0      C 0 I 2796
e caeJap4.Scaffold18194  269997 1200 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   605016 1407 - 33334924 I
e caeRem4.Crem_Contig0   491975 1893 -  4500979 I

a score=0.000000
s ce10.chrX             3347268 1046 + 17718866  
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  269997 1200 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   605016 1407 - 33334924 I
e caeRem4.Crem_Contig0   491975 1893 -  4500979 I

a score=728.000000
s ce10.chrX             3348314 55 + 17718866 ATACGGTAATGGATACATGTGGTATCATAACTTAAGTATGAATTAACATTCAAAA
s caeJap4.Scaffold18194  271197 51 +   823664 ATAGTATAATGTATACacata----caaaaaataaaaacctaatgataACCAAAA
i caeJap4.Scaffold18194 I 1200 C 0
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   605016 1407 - 33334924 I
e caeRem4.Crem_Contig0   491975 1893 -  4500979 I

a score=-829.000000
s ce10.chrX             3348369 1 + 17718866 -A
s caeSp111.Scaffold629   606423 1 - 33334924 -A
i caeSp111.Scaffold629  I 1407 C 0
s caeJap4.Scaffold18194  271248 1 +   823664 T-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeRem4.Crem_Contig0   491975 1893 -  4500979 I

a score=16024.000000
s ce10.chrX             3348370 75 + 17718866 TTTTAAGGAATGCCAGTCAACA---GCGTCCTTTGCCATTTTTCTTCCGACTTTTCATTGGGCCTCATATTGCAAGGT
s caeRem4.Crem_Contig0   493868 75 -  4500979 ttttcagagacgAAGCTCAACG---TCGCAGACTTCCATTTATATTCCGTCTTATCATTGGTCCACAAATCGCAAGGT
i caeRem4.Crem_Contig0  I 1893 C 0
s caeSp111.Scaffold629   606424 78 - 33334924 TTTTCAGGAATGACGATCAACAACTTCGCAGAATTCCATTCTTGTTCCGTTTCTTCATTGGTCCCCATATCGCAAGGT
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  271249 70 +   823664 -----AGGGTTAACGATCGTCA---ACGTCGCCTACCTTTCTTCTTCCGTTTGATCCTTGGCCCACGAATTGCACGAT
i caeJap4.Scaffold18194 C 0 I 571
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e cb4.chrX              8430430 3563 + 21540570 I

a score=38.000000
s ce10.chrX             3348445 1 + 17718866 G
s caeRem4.Crem_Contig0   493943 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   606502 1 - 33334924 A
i caeSp111.Scaffold629  C 0 I 37
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I

a score=91.000000
s ce10.chrX             3348446 1 + 17718866 A
s caeRem4.Crem_Contig0   493944 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 431
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   606503 37 - 33334924 I

a score=0.000000
s ce10.chrX             3348447 43 + 17718866 GTTAATACTATCTTTTTTCCTTTTTTTAAATAGAAATTTAGCT
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   606503 37 - 33334924 I
e caeRem4.Crem_Contig0   493945 431 -  4500979 I

a score=1489.000000
s ce10.chrX             3348490 52 + 17718866 TTTCAGATATCTAAGAATGCGAAGACTTATGAACGAGGCCAGGCGACAAAAC
s caeSp111.Scaffold629   606540 49 - 33334924 tttcagatacATGCGTATGCGTCGTGCTATGCGTGAAG---GGCGTCAAAAC
i caeSp111.Scaffold629  I 37 I 344
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeRem4.Crem_Contig0   493945 431 -  4500979 I

a score=0.000000
s ce10.chrX             3348542 264 + 17718866 TTGATGGCACATCGTCGTCAGGACAACGCGAACACAAGTTCCAACTCATCTGTTGTGCAACGCTCGTCGGTTTCAGAAACCTACTAGACGTGAATGTAATTCGCGTCGGGTATTTTCAAATCTGAAAGTTTTATAAATTCTGTGAATTCATACATTTGTCCTAACGAAATACTTATTTTCAAGTAGAACTTTTATTTATATGGAATGACTTTTTCaataataaaaataaaaataataatgataatTTTTTTTCACATCCGAAAC
e caePb3.Scfld02_0      1770382 2796 +  4147112 I
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   606589 344 - 33334924 I
e caeRem4.Crem_Contig0   493945 431 -  4500979 I

a score=91.000000
s ce10.chrX             3348806 1 + 17718866 A
s caePb3.Scfld02_0      1773178 1 +  4147112 a
i caePb3.Scfld02_0      I 2796 C 0
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   606589 344 - 33334924 I
e caeRem4.Crem_Contig0   493945 431 -  4500979 I

a score=-184.000000
s ce10.chrX             3348807 15 + 17718866 AATACAATAATGCCA-------
s caeRem4.Crem_Contig0   494376 17 -  4500979 -----AATCAAATAATTAGTTC
i caeRem4.Crem_Contig0  I 431 C 0
s caePb3.Scfld02_0      1773179 15 +  4147112 aatacaattataCAA-------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194  271319 571 +   823664 I
e cb4.chrX              8430430 3563 + 21540570 I
e caeSp111.Scaffold629   606589 344 - 33334924 I

a score=-751.000000
s ce10.chrX             3348822 2 + 17718866 -GT
s cb4.chrX              8433993 2 + 21540570 -GT
i cb4.chrX              I 3563 C 0
s caeRem4.Crem_Contig0   494393 2 -  4500979 -GC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1773201 2 +  4147112 GG-
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194  271319 571 +   823664 I
e caeSp111.Scaffold629   606589 344 - 33334924 I

a score=51174.000000
s ce10.chrX             3348824 104 + 17718866 TCATTTTCCCTCCCACATTTGTTTCTGC-AACGAGTACAAGTTATAAGAGCGATGAGAACAATAGAACAACCAATATAGTCAAAACTGAAGTAGTGCTCTCCGCC
s cb4.chrX              8433995 105 + 21540570 TCACTTTCCCTCCCACATTTGCTTCTGGAAACAGAATCGAGTTAGAAAAGAACTGCAACTAGGAACACAACCAGAATAGTCAGAACGGATGATGATTTCTCGGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   494395 104 -  4500979 TCACTTTCCCTCCCACATTTGCTTCTGT-AACACTTCAAAGTTAGAATAGCAATACAATAAGTGAAACAACCAGAATAGTCAAGACGGATGAGGATTTCTCAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   606933 104 - 33334924 TCACTTTCCCTCCCACATTTGTTTCTGT-AACTTTAGTGGGTTATCAAAGCAAGGAAATGAACAAAACAACCAAAATAGTCAGAACAGatgatgatttttcagcA
i caeSp111.Scaffold629  I 344 C 0
s caePb3.Scfld02_0      1773203 104 +  4147112 TCACTTTCCCTCCCACATTTGCTTCTGT-AACAATTGAACGTTATCAAAACAAGattatgagaaaaacaacCAAAATAGTCAGAACGGAAGACGATTTTTCAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  271319 571 +   823664 I

a score=130357.000000
s ce10.chrX             3348928 135 + 17718866 GAATTCAGCTTACACTGTGGGAGCATTGCTTTTGTGGGACGTACGATCATTTCGCGTACTAGTTGCCAGGCCCGGAAGCCGCATTCATATCGAATCGGATATTTCACACAATCGATGTAGTTTCGCATTGCTCTG
s cb4.chrX              8434100 135 + 21540570 GTGTTAAGTTTGCATTGGGGCAGCATTGCCTTCGTTGGACGAACGATCATCTCACGAACCAGTTGCCATGCTCGATATCCACATTCGTAGCGGATGGGATACTTCACACAGTCAATGTAGTTTCTCATTGCTCTG
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   494499 135 -  4500979 GCATTCAGTTTGCATTGAGGAAGCATTGCTTTTGTTGGACGGACTATCATTTCACGGACCAGTTGCCAAGCACGATACCCACATTCATATCGGATTGGGTATTTGACACAGTCGATGTAATTCCGCATAGCCCTG
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold629   607037 135 - 33334924 GTGTTTAGTTTGCATTGTGGTAGCATCGCTTTTGTAGGACGGATGATCATTTCACGGACTAACTGCCATGCACGGTAACCACATTCATAGCGGATTGGATATTTGACACAGTCGATGTAGTTACGCATTGCTCTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1773307 135 +  4147112 GTGTTGAGTTTACATTGCGGAAGCATTGCTTTGGTAGGGCGGATGATCATTTCACGGACCAGTTGCCAAGCACGGTAGCCGCATTCATAGCGTATTGGGTATTTAACACAGTCGATGTAGTTTCGCATAgctctg
i caePb3.Scfld02_0      C 0 I 51
s caeJap4.Scaffold18194  271890 135 +   823664 GAGTTGAGTTTACATTGTGGAAGAAGAGCTTTGGTTGGACGAGCGATCATCTCTCTCACTAATTGCCAAGCACGGTATCCACATTCGTAGCGGATTGGATACTTTACACAATCGATGTAGTTTCTCATTgctctg
i caeJap4.Scaffold18194 I 571 I 50

a score=207.000000
s ce10.chrX             3349063 11 + 17718866 TGTAGAATTTT
s caeSp111.Scaffold629   607172 11 - 33334924 AATAAGATATT
i caeSp111.Scaffold629  C 0 I 45
e caePb3.Scfld02_0      1773442 51 +  4147112 I
e caeJap4.Scaffold18194  272025 50 +   823664 I
e cb4.chrX              8434235 31 + 21540570 I
e caeRem4.Crem_Contig0   494634 51 -  4500979 I

a score=0.000000
s ce10.chrX             3349074 511 + 17718866 TTATGTTAATAGGCTCATTTAGGCTTGACCCAAAGTTAtcaaaggtggagtagcgccagtgggcaacgtgtttgaaactactcgtatggtgccaaaatgaacaaatgtaatagaaaaacttttcaaaaaagaaaatataaattgttttttactgtctaaaaatgccacttattcagttttggccactcataaatttggaaatcgacccaaaaaaaaattttgtacgagatttttacttttattttattttagttagtcttgttgaaatgttctagggatcggaacatgcgacgttgcactggattcccttaaaccctaatatttttcaaaactttggtaatttgccaaactttgaccggaaattttaagacacctaacattttttggagtattttattatatcatgatatctgacagttttggatcattattagacattattagacattatatggcacttagacaaaattcccactggtgctattccatctttaaTAATAATTTGATATGC
e caePb3.Scfld02_0      1773442  51 +  4147112 I
e caeJap4.Scaffold18194  272025  50 +   823664 I
e cb4.chrX              8434235  31 + 21540570 I
e caeSp111.Scaffold629   607183  45 - 33334924 I
e caeRem4.Crem_Contig0   494634  51 -  4500979 I

a score=182.000000
s ce10.chrX             3349585 2 + 17718866 AA
s cb4.chrX              8434266 2 + 21540570 aa
i cb4.chrX              I 31 C 0
e caePb3.Scfld02_0      1773442 51 +  4147112 I
e caeJap4.Scaffold18194  272025 50 +   823664 I
e caeSp111.Scaffold629   607183 45 - 33334924 I
e caeRem4.Crem_Contig0   494634 51 -  4500979 I

a score=1119.000000
s ce10.chrX             3349587 4 + 17718866 AGTT
s cb4.chrX              8434268 4 + 21540570 agtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   494685 4 -  4500979 AGTT
i caeRem4.Crem_Contig0  I 51 C 0
e caePb3.Scfld02_0      1773442 51 +  4147112 I
e caeJap4.Scaffold18194  272025 50 +   823664 I
e caeSp111.Scaffold629   607183 45 - 33334924 I

a score=-1763.000000
s ce10.chrX             3349591  4 + 17718866 A-----------GGA
s cb4.chrX              8434272 15 + 21540570 aaaaattgcACGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   494689  4 -  4500979 A-----------GCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  272075  4 +   823664 A-----------GCA
i caeJap4.Scaffold18194 I 50 C 0
e caePb3.Scfld02_0      1773442 51 +  4147112 I
e caeSp111.Scaffold629   607183 45 - 33334924 I

a score=1476.000000
s ce10.chrX             3349595 3 + 17718866 AAT
s cb4.chrX              8434287 3 + 21540570 CAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   494693 3 -  4500979 AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   607228 3 - 33334924 AAC
i caeSp111.Scaffold629  I 45 C 0
s caeJap4.Scaffold18194  272079 3 +   823664 AAC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1773442 51 +  4147112 I

a score=239123.000000
s ce10.chrX             3349598 341 + 17718866 TTACCCGCAAACCGCTGCATCATTTGCCCCTTTAACTTC---TGAATGACTTTCTGAGATTTTCCTTGTATCTGAAACCAGCTCGGCTTGACATTGCATCATTTCACTTCTCGTCAGCGTTTTTGTGAAACACTCGATGTTTCTGAGCATTTCTGAAATA--TTTTAAATATATTTC--------ATTCACTGTTGCCTACA----AATTTTGATCT----ACCTCCATATCCATCCCGACACAAAAAGTCTAGAATTTTAATCGCCGCATCGTAGTTGAATCGAGCTCTATCGGCTGCAAAGCAAACATCCTTGTATGGTTCGATGCAGACATCAAATAAGAAGAAATTGCTGGAAATTGT-
s cb4.chrX              8434290 334 + 21540570 CTACCCACAAACTGCTGCGTCATTAGctccagaaacttc---tgaatGACTCTCGGAGATTTTCCTAGTATCCGACACCAGCTCAGCTTGGCACTGCATCATTTCAGATCTAGTTAGGGTCCTTGTAAAGCATTCAAAGTTTCGtagcatttctgaaaaa----------ataattt--------gggaAACTATgtgttta----aaaattgaaac--aaaccCCCATATCCATCTCTGcacagaaaatccaaaattttaatcgCAGCGTCATAATTGAAACGGGCCTTGTCTGCAGCAAAACAAACATCTTTATAAGGCTCAATGCAGACATCAAATAGAAAGAAATTgctggaaaatg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   494696 329 -  4500979 TCACCCGCACACAGCTGCATCATTTGCTCCGGAAACTTC---TGAATGGCTTTCTGATATCTTTCTGGTGTCAGAAACCAATTCTGCTTGACACTGCATCATTTCAGATCTAGTCAACGTTTTAGTGAAACATTCAATGTTTCGAAGCATTTCTAAAGAA-------CGTGTAATTTTTCATGCCAGAGAACAATATTT----------------------ACCTCCGTATCCATCACGACacaagaaatccaaaattttgatagcAGCATCATAATTGAAGCGTGCCCGGTCTGCAGCAAAACAGACGTCTTTATAGGGTTCTATGCACacatcaaaaagaaagaaattgctgaaaaaag--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   607231 337 - 33334924 ATACCCACAAACAGCTGCATCATTAGCTCCAGAAACTTC---AGAAtgactttctgaaatttttcttgtatcCGAGACAAGCTCAGCTTGACACTGCATCATTTCGGATCGTGTCAATGTCTTCGTGAAACATTCGAAATTCCGAAGCATTTCTATAAACATGATGACGTGTGTTGT--------GGCAAACAATTAAC-----------TTGAAAC--CAACCTCCATACCCATCTCTAcaaagaaaatccaaaattttaattgCTGCATCATAGTTGAATCTAGCACGATCTGCAGCAAAACAAACATCCTTATACGGCTCAATGCAGACATcgaataagaagaaattgctgaaaatag--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1773493 331 +  4147112 TTACCCGCAAACTGCAGCATCATTGGCTCCAGAAACTTC---AGAGTGACTTTCCGAAATCTTCCTAGTGTCCGAAACCAGTTCAGCCTGGCATTGCATCATTTCTGATCTTGTCAATGTTCGAGTGAAACATTCAAAGTTTCggatcatttctgaaaaattctctac---TGTT-T--------GAGAAGCTTTTA-------------TAGATGCCTCAACCTCCATATCCATCTCTACacaagaaatccaaaattttaattgCAGCGTCATAATTGAACCTAGCCTTGTCTGCTGCAAAACAAACATCCTTATATGGTTCGATGCAGACATCGAATAGGAAGAAATTGCTGAAATC----
i caePb3.Scfld02_0      I 51 C 0
s caeJap4.Scaffold18194  272082 345 +   823664 TGACCCACAAACAGCCGCATCATTAGCTCCGGCAACCACCAGCGATTGGGTTTCAGACACTTTTTTGGTGTCAGACACCAGTTCAGCTTGGCACTGCATCATTTCGGATCTGGTCAGGATTTTTGTAAAGCATTCAAAGTTGCGGAGCATttctgagaaa-------tttttttttt--------gaaagatgtTGACATGAGCTTAAGACTATTAC--AAACCTCCATATCCGTCGCGGCATAagaaatctaaaattttaacgGCAGCGTCATAATTAAATCTAGCCTTGTCCGCAGCAAAGCAGACATCCTTGTATGGTTCGATGCAAACATCAAATAGGAAAAAGTTGCTGAAAATAA-T
i caeJap4.Scaffold18194 C 0 I 31

a score=-2083.000000
s ce10.chrX             3349939 32 + 17718866 GTCTTGTA----TCAA--ATATAGCCGTATGCAAATAA
s cb4.chrX              8434624 20 + 21540570 ----agaatttcggGA--GT------------AAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   495025 19 -  4500979 ----tgaa----gtga--gctta---------aaataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   607568 18 - 33334924 -----gaa----ataa--attca---------aaacaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1773824 20 +  4147112 -----GAA----GTAATTACTTA---------AAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  272427 31 +   823664 I

a score=246302.000000
s ce10.chrX             3349971 551 + 17718866  
s cb4.chrX              8434644 578 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   495044 563 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   607586 558 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1773844 563 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  272458 593 +   823664  
i caeJap4.Scaffold18194 I 31 I 862

a score=34897.000000
s ce10.chrX             3350522 109 + 17718866 ataagaaaaataa---------------taataatatatGCAAAATTTCGCGTGCGCCGACTGTGTGTACTGTTTGAGGTTT----TGAGTG--TGTTCTTTTGATTTTGTCGCTTCCGCGCGTTAAAAG
s cb4.chrX              8435222 123 + 21540570 ataataataatattattATTGAAAGGGAGTGAAAAAGGGGACAAGTTGCGCATA-------TGTGTGTACTGTTCAATGTTCGAAGTGAGTGAGTGTGCTTTTGATTTTGTCGCTCCCGTTTGCTAAAAG
i cb4.chrX              C 0 I 1297
s caeRem4.Crem_Contig0   495607 104 -  4500979 ataataataatac---------------acAGAATAAGGAAAACATTACGCGCA-------AATTTGTACTGTTTGATGTTT----CGACTGAGTGTGCTTTTGACTCGTTCACTTCCGTTCGTTAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   608144 101 - 33334924 ataataagaataa---------------taataataaggAAAATTGTGCGCGCG-------AATTCGTACTGTTTGATGTTT----TGAGTGACTGCGCATTCGATTTT---GCTCCCGTTGGTTAATAG
i caeSp111.Scaffold629  C 0 I 313
s caePb3.Scfld02_0      1774407  99 +  4147112 ATAATACGAATAA---------------TAATATAACAGAAAATGGTGCGCGAG-------AATTTGTACTGTTTGATGTTT----TGAGTGACTGCGCTTTCGATTTTACCGTTTCCG-----TGAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I

a score=3485.000000
s ce10.chrX             3350631 48 + 17718866 GTTTGTGTAATGCTCTTCGAGGGATAACAACGGGTGTAACACAAAAGA
s caeRem4.Crem_Contig0   495711 40 -  4500979 --CTACATTCGGCTCTTTAGAGAATAGTAAGG------ATACAAAAGA
i caeRem4.Crem_Contig0  C 0 I 316
s caePb3.Scfld02_0      1774506 40 +  4147112 --CTACATTGTGTTCTTAAGTGGAaagcaaaa------atacaaaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I

a score=-1672.000000
s ce10.chrX             3350679 194 + 17718866 GGTACAAAACTGTACGTGCAAACATTAACAATAGAAGCGAAAATTGAATAAAAAACTAAA-----TGCTCGAAGGAAGGCCTAGTTGGTGGTTAGAAAATTCAAACTAGCCACCTACTTTTTTGGGGTTTTTCATGCAAAACACCGTAAGAAAACTCTAATTTTTCGAGGTTAA--CTGTTATCATATTCGGAATCAGTGT
s caePb3.Scfld02_0      1774546 148 +  4147112 cTAAC--TATTGTTTGTTCAAG-------AACACCTTCTTGAATTGTGTGAAATGGGAAAAGGtcagcacaaaaaaaagatgggttcac-attggaaaataaaa---------------------------tcat--------tcctaagaggaaactaattttcagtgaCTCGTTCTGTTTTC--------AATcgctgt
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=0.000000
s ce10.chrX             3350873 76 + 17718866 GTCGAAAACCCGCTAATTTGAAATTTTCCCACACTTCAAAAATTTAGAAGTTCCCACAAACACTTTGCAGTATCGA
e caePb3.Scfld02_0      1774694 38 +  4147112 I
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=-667.000000
s ce10.chrX             3350949 255 + 17718866 ACAATAGTGTTCAAAAATTGATAGTACA---------GCAGTTTTTTGTTGATGGTGCTGCTGGAGACTTCGAAACTTGCATAGTGC------AATTGAATTTGGTAAAACCGTATCCTTTAAAATATTATGCAATTTCCTAAATTTTTCAATTATGAAACGGCTGATTTATTTTTGAATTTCCGCAAATTGTATG-AATCTGAAATAATGGGATATAATTTTTTTACCGTATGAAACATTTCTTTTTTGAGTATTCATCTTGAATTAAAA
s caePb3.Scfld02_0      1774732 212 +  4147112 ACCATtgttttaaataatttttggtcTGCTTGTGGAtacagttttttcaagaagtcaTTATT----CCTTTG----TCGTGTAGTTCTCTATTAATGTTTTTTAATAGAACCGT-TCAAACACAATTTGATGCAATTTC------------------aatcaactcatttttttcggtttttatcctggtttttCATAGTCTGGCCTGAT----------------------TGCAACA----------GGAAAGTTAGCTTGAGTTTAAA
i caePb3.Scfld02_0      I 38 I 48
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=0.000000
s ce10.chrX             3351204 43 + 17718866 AAAGAGCATATGACTTATTCTTGAATTTCCTAATAAAGTTAAT
e caePb3.Scfld02_0      1774944 48 +  4147112 I
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=-994.000000
s ce10.chrX             3351247 261 + 17718866 GTATTGTTTTTCTTTAATTTTTTACCTTTTGAGTACGTTTTGTTTTGTCGCTTTACCCCCAGTTTAACATAAGTTTGACCCAATTCTCGCTAAACTTTGACCACAACTTTTTTGCGTTGCTTTAAATTTAGGTAAGAATTTGACAAAAAAATAAAGAATTCGTCAAGAAAATATTATAAACTTTTTTTCCATTTCTTATTTCACAAACATCTTCATTTTCTATTTTTTCAAATATTTTCTAAAGATCTACA-------GCAAAACAAA
s caePb3.Scfld02_0      1774992 159 +  4147112 GTATT-CTTTTCATTAGTTGTACTTTTTCTGGtaatgtttcgatt--------------------------------------------------------------ttttttgc------------------------ttggcAA----------TATTTGTTCTGCAATTGTCGATTACTATGCTATAATtcattatttcgaa------------ttttgtctTCCGAAAAACTTTCTAGCCAGTTACATAGAtcttcaaaacaga
i caePb3.Scfld02_0      I 48 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeSp111.Scaffold629   608245 313 - 33334924 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=2564.000000
s ce10.chrX             3351508 44 + 17718866 AAGATACAGAAGTTCAGCGTC-TAT--ATGCATTCCATTCCGCCACC
s caeSp111.Scaffold629   608558 42 - 33334924 AGAAGACAAAAGTTCAATGTTGTAAATATATATCTTTGTTCA-----
i caeSp111.Scaffold629  I 313 C 0
s caePb3.Scfld02_0      1775151 39 +  4147112 -aaagacaAAAGTTCAATGtcacaa--atatatttttgttca-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I
e caeRem4.Crem_Contig0   495751 316 -  4500979 I

a score=22145.000000
s ce10.chrX             3351552 118 + 17718866 AGCGAGCCATCTGGAATTATTCAC--ATAACAAGTGCATTGTTCTTTTCTTGTGCCCTC--------------TATTGTGCTGGCGGTTTGCCAATGCGTTCACTGACCTTAGAGAGGAAGAC-----ATACACCCCCC
s caeRem4.Crem_Contig0   496067 123 -  4500979 AGAAAGCCATTTGGAATTATTCACCAGAACCAAGCTCATTCTT---TTCTTCGGCTTTTCCATTGTGTTGCCAGTTTGTGTTGCCAGTTTGCCA--GTGTTCACTGTCTTAGGGGCGGCACACCTCAC-----------
i caeRem4.Crem_Contig0  I 316 C 0
s caeSp111.Scaffold629   608600 103 - 33334924 AACAAGACATCTGGAATTATTCAC--AAAACAACCacatttcta--ttcttttgCTTCT----------------TTGTGTCGCCGGTTTGCCAATGCGTTCACTGTCGTTGGGGCGGCACAC----------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1775190 112 +  4147112 aacaaGCCTTATGGAATAATTCAC--AAAACAAGCCTATTCTTC--TTCTGGTGCTCCTC-------TTCCCCTATTGTGTTGCCGGTATGCCAATGCGTTCACTGTCGTTGGGGCGGCACAC----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I
e cb4.chrX              8435345 1297 + 21540570 I

a score=-1244.000000
s ce10.chrX             3351670 13 + 17718866 CCCTTTCTTCCTA--
s cb4.chrX              8436642 14 + 21540570 -ctcttttttcttaa
i cb4.chrX              I 1297 C 0
s caeSp111.Scaffold629   608703  5 - 33334924 --------TCCTC--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1775302  5 +  4147112 --------TCCTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  273051 862 +   823664 I
e caeRem4.Crem_Contig0   496190  0 -  4500979 C

a score=44301.000000
s ce10.chrX             3351683 151 + 17718866 GCGCGTCATATAACTTCATTAGTAAATTCCACTCAAGA-CGAAACATTGCTTGGGCGTGCAAACACACGCAC------AAAAAACCTGCACCATCATGTATGGGTTCG--TCAATT-------TTTCTTACATCCTTT--CACA----------------------------TCCTT--------TTTTTCTGTAGGG----TATATTG
s cb4.chrX              8436656 135 + 21540570 caGCGTCACATAACTTCATTAGCGAATTCCACT----------------C-TACTCGtgcaaa------cac------aaaaatctTGCATCATTTTGCGTGGGGGcaccttgttt-------tttttctgcaagtCCAGAATA----------------------------TTCTT--------TTGTT--CGGGTAATATTACATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   496190 132 -  4500979 AAGCGTCATACAAC-----TAAAGAGTTCCACTAAAGA-CAAAACATAGC-TGGGCGtgcaaa------cac------aaaaaacttgcATTGTCATCTGTGAGGACG---------------tttttttACCGgttc--aata----------------------------ttttt--------ctat-----agtaaaattcattca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   608708 144 - 33334924 GAGCGTCATATAACTTCATTAGTGAATTCCACTCAAGA-CGAAACGTGGC-TGGGCGTGCAAA------CAC------AAAAA-CCTGCATCATCATGTGTGGGGGCaagctattt-------tttcttcttgttttc--aata---------------------------gTCCTT--------TTGTT--GGGGGA----TACATTa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1775307 144 +  4147112 GAGCGTCATATAACTTCATTAGTGAATTCCACTCAAGA-CGAAACGTGGC-TAGGCGTGCAAA------CAC------AGAAA-CCTGCATCATCGTGTCTGGGGTAAAG-------------TTTTTTCTAGCCTTC--AATA---------------------------ATCCTTACTTGGAGTTGTT----AGAA----TACATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  273913 182 +   823664 GTGCGTCATATAACTTCATTAGCGAATTCCACTCAAGACCGAAACG-----TTGGCGTGCAAA------CATAGCGaaaaaaaCCCTGCAACATCATG--TGGGTGCACCGAGTTCTCTcgcgtttttttcttaatac--AATGTGCATtagcaaaacaacaagaaaacatttcttt--------tttttttcttgat----ttttttg
i caeJap4.Scaffold18194 I 862 I 128

a score=-12048.000000
s ce10.chrX             3351834 102 + 17718866 AAAAATTAGAGCA-------ATACCa----ttaaaaataatttt--------ttataaaaaaGAGTTCAAAAAAAAATTT----------CCATAGTCT--GCCTTTTCCAAAAGTTTAAACTTTATTGAGAA
s cb4.chrX              8436791 114 + 21540570 GGATAGTGGAGAATAGTTCTTTTTCGACATtacgaaatattttt------tgtcacAAGGAAGAAC----------CTTCTTTTTGtctgtgtgtatgtgtgcGTTTCT---GAGAGTAAACTTTGTTTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   496322  90 -  4500979 aaaaattgcatag-------CTTTCAAAATCTTGAAGCA---GT------CGTCTcacggaagaaaaa-----aagattc----------------tgCGTGCCCTTT------Gagtaaattttgtttgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   608852  92 - 33334924 ggaaaacaaagtt-------ttgttaagatttcgaaatgttttt--------------gaaggaaCTG----AAAAGTTC----------TTAGTATGTGATCTTTTT------CGTAAAACtttgtttcaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1775451 102 +  4147112 CATAAACAAGAAA-------TTCAttggattttaatttttttttcgtttttttcctactAAAGAATTG------CAGTTC----------CTGAATTGT--TCCCTGC------GAGCAAATGttatttgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274095 128 +   823664 I

a score=131780.000000
s ce10.chrX             3351936 389 + 17718866  
s cb4.chrX              8436905 400 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   496412 444 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   608944 427 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1775553 463 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  274223 392 +   823664  
i caeJap4.Scaffold18194 I 128 I 2046

a score=8897.000000
s ce10.chrX             3352325 260 + 17718866 CTCCGATGTACGCATTATTTCGCAACTGATTAGCTCTAACCGTTCATG----ACGTAATTTT---AGTAAGAATGCATAATATTA----------TAGTCGTGAAT--------TTCTAGCTCTTTATTAATGTTGTTTTTCCAAC--TTGCTGAATCTATTTGATCTTTTCACTGC-TTCTCATTGACGAGAGCTACAAGAAATTGCACGTAGCGTTCCCTACAACAGTTTACTCAGTTTACCCACTTTTTGAGTACTT----------------TATGTTCTAA----CTAAACAAT-----CAAAAATCG
s cb4.chrX              8437305 242 + 21540570 CTC---GT-----------------CCATTTTTGTATCCTCATTTGCATCCAAAATAATACT---AACCAAGATTTATTACATATCCACGAATC-TAGGTTCTATTAATGGCACATCCACTTGTATAAT-TCGTCGTTTTTCGTGTCATCCATTAATTTATTTGATT--TCCACTTT-T--------ACCGGAGTTACAACAATCTGCACGTAGCGTTCACAACTTGTG-TTAGCTAGTTTACACGATGTTTGAGTACAT----------------TTT-TTCGCA----TTACAG-CT-----CG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   496856 250 -  4500979 CTC---TTAG---CTAAACTC---ATCATTTATTATTCATCCTTGATTTTAAAAACCACGTTCTCAATCGGAATATGGTAATTGTTGCTAAAAT-AAAA--CTACTATAACTACACC--------TAGC-TTGTTACTTTCACTAC--TTCCTGAATCTATTTGATC--TTCACTTT-T--------CCGAGAGTTACAACAAATTGCACGTAGCGTTCACAACCTGTGTTTCGCTAGTTTACACAATGTTTGAGTACTT----------------TTTGTTCGCACTACCTAcgg-ct-----ca-------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   609371 254 - 33334924 CTCAGGTTGGTCCCtaaat------ttacatttttatGGTGGTATAACACCTATCTCGCATA---AGTC---ATGTAAGAAGTTT----------TAGTTCTCAAtcgaaacacttttttatttatagT-TTA-AGCTTG-TTCAC--TTCCTGAATTTATTTGATC--TTCACTTT-TACT--TTGCCGAGAGTTACAACGAATTGCACGTAGCGTTCACAACCTGTGTTTCTTTAGTTTACTCAGTGTTTGAGTACtt----------------ttt-ttCGCA----CTACAC-CT-----CGAAAACCG
i caeSp111.Scaffold629  C 0 I 1665
s caePb3.Scfld02_0      1776016 263 +  4147112 GTCAGgttaa----------------tgaatttttattagGGAGCTTGGTTCAGATAATATA---AGTC-------AAAAAATATCCCAAGCACGTAGTTCTCAGT--------GTTTTTTCTTGTGGG-ATA---CTTGTTTCAC--TTCCTGATTTTATttgatc--ttcattttctact--tTGCCGAGAGTTACAAGAAATTGCACGTAGCGTTCCCAACCTGTGTTTCTCAAGTTTACATAGTGTTTGAGTACTCGACGcctcaaaaatcgttt-tttgta----CTATAT-ATTATGATGAAAGTCG
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-65762.000000
s ce10.chrX             3352585 533 + 17718866  
s cb4.chrX              8437547 242 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   497109 297 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      1776294 519 +  4147112  
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeSp111.Scaffold629   609625 1665 - 33334924 I

a score=77403.000000
s ce10.chrX             3353118 221 + 17718866 AAAAATATCCT------C-ACACACGAACAACACTTGAGCGACGTCAAAATTTGGTTAAGTTCAAGTAGTTCCCAGAAGAGA-CAAAAAAC-----TTCGAGCCCTTCTTATTTCTTT------TTTCGTTGTCTCCCTC--T------------AAC---------TTTC-ATTTTTGATGTTTGTAACT-CAACTCTACTTGTCAAGCTAT--------GCTCAC-CCCAGCAATATATGTGG-ACCATAAAATACTTCACCTCATTTTTTTT
s cb4.chrX              8437789 238 + 21540570 -----------------gaaaa-tcgaacaacactcaa-----gtcaaaa-aaaattcagttcgAGTAGTTCCCAGAAGGGCTCAACAGTTTTGAGAAGGGGTCCCTTCCATTCTcatatattcattttttgtctctcgc-ttctttttttttgagacgTCGGggcttctcaatttttgatgtttgcaACT-CA-----ACTTGCCAAGCTATGCATTTAGACTCAC-TCCAGC-----CCATGGAACCATAAACTACATCacctcattttcttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   497406 197 -  4500979 -----------------G-AAA-TCGAACAACACTTGA-----GTCGAAATTTGGTGTAGTTCGAGTAGTTCCCAGAAGAGC-CGTGAGTT------AAGACTCCCCT----------------ATTTTTTGTCTCCCAC-TT------------GAC-----Ggcttctc-atttttgatgtttgtaACTCCA-----ACTTGTCAAGCTATGCATTC--ACTCAC-TTCGGC--GATATATGG-ACCATAAACTACATCACCTCATTTTCTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   611290 212 - 33334924 aacaaaatcttcGTACCC-ACA-ACGAACAACACTTGA-----GCCGAAATTTGGTGTAGTTCGAGTAGTTCCCAGAAGAGC-TGAGAGTT-----GAGGgttcc-------t-----------cttttttgtctctcaC-TT------------GAC-----GGCTCctc-atttttgatgtttgTAACG-CA-----AGTTGTCAAGCTATGCATTC--ACTCA--CACAGC--TCGATATGG-ACCATAAAATACATCACCTCATTTTCCGT
i caeSp111.Scaffold629  I 1665 C 0
s caePb3.Scfld02_0      1776813 216 +  4147112 -----TATCAT-GTTTTC-ACA-ACGAACAACACTTGA-----GTCAAAATTTGGTGTAGTTCGAGTAGTTCCCAAAAGGGC-CGAGAGTT-----GAGGAGTccctcctatt-----------tttttttgtctttcacTTT------------GAC-----GGCgtctc-atttttgatgtttgtaACT-CA-----ACTTGTCAAGCTATGCATTC--ACTCACTCCCAGC--TAGATATGG-ACCATAAAATACATCACCTCATTTTCCGT
i caePb3.Scfld02_0      C 0 I 149
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-8942.000000
s ce10.chrX             3353339 73 + 17718866 TCC---------GCAAGACA------------TCACTTTCTTCATACACGGTTTTGGTGGAAAGATTTTACAAAGTTGGTGGTTTTAGAAAGTG-----------------
s cb4.chrX              8438027 62 + 21540570 tttctgcttcgTGCGTCATA------------TCATCTTTT----------------TGGGTAG---------------------GATAAATTATCACTGAAAATACATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   497603 50 -  4500979 -----------GGCGTCACA------------TCATTTTTT------------------GGTagcttc----------------caaaaaattggttgtAAGAAAA----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   611502 59 - 33334924 ------------GCGTCACaaagtcttcttcttcttttttt------------------ggtatctttt-----ttttctggtgtGAGAAATTG-----------------
i caeSp111.Scaffold629  C 0 I 145
e caePb3.Scfld02_0      1777029 149 +  4147112 I
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-4666.000000
s ce10.chrX             3353412 110 + 17718866 TGGGAACTAAATAT-ATTTTTTGTGCCTCTGAGAACAAAGTAGATAGGAAATTCATAGTATTGTGTAG-------TTCACA---------AGCATTATTTGTTAAATTTTTTGGT------TCCTGAAATAG----------------C
s cb4.chrX              8438089 144 + 21540570 CAggatcaaaaaatcatatttgaaatttttcagtagaAGATAGGAAGGAAGTTTTGAAGGTCAAACAAAGTTGTCTTCAAGTAGTGTCtgagcttcatttttcaa-----ttgataatttcttttaaaatagaTCGAAACCAGATAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   497653  71 -  4500979 TAAGTTCTCAAAATAGGATGTTGCATTTTTTATTCCAAG------------------------------------TTCAGg----------------ttttttta-----ttggt------ttttagGGCAGGT---------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1777029 149 +  4147112 I
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeSp111.Scaffold629   611561 145 - 33334924 I

a score=-21736.000000
s ce10.chrX             3353522 110 + 17718866 ---------------------ATTTTTGAAAGATCGT--------------------------------------------ATTTAC---------------AGGCACAATGAAGATT-----TATTTAGAAAAATGTGTACGTTAtattatccaggcgcaaaattata-------cgcaaagtgcactaaaattacggtat
s cb4.chrX              8438233 192 + 21540570 GCTTTTGAAGTGACACAACTCCAATTTAAGTGCTAATTAACTCATTTCAAGATACTTGCGGCTAAATGTGAGAcagggaatttcaaaaagattttcagccttatttccagtaattattttttctgttttcaaaaatttttg----gattcaacaaa----aaaattataaaaagcttgcaaatctcagcagaatgaaatt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   497724  90 -  4500979 -----------------------------GTGTTCATTA------------------------------------------TATGAAAGAACTATGA-----ATGTACGATGGTCACT-----TGTTATTACGATAT----------TTCATCTAG----AAAATTGTC-----CTGACAGTTGTCAGAA------------
i caeRem4.Crem_Contig0  C 0 I 42
s caePb3.Scfld02_0      1777178  66 +  4147112 ---------------------atttttcaaaatttatcgg-----------------------------------------TTCGAA---------------GTATCTcatgaatatt-----cattttt-----------------cttaccCAG----CCAGATATA---------------------------------
i caePb3.Scfld02_0      I 149 I 9
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeSp111.Scaffold629   611561 145 - 33334924 I

a score=-2882.000000
s ce10.chrX             3353632 36 + 17718866 ccggtctcgacacgattg--------tttttccaaatgcaataa
s cb4.chrX              8438425 27 + 21540570 -----tcgcaaaaaa-----------atttgcaaa-tgcaaaaa
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold629   611706 27 - 33334924 ccagtttttaaaaaatag--------cttCTCCAA---------
i caeSp111.Scaffold629  I 145 C 0
s caePb3.Scfld02_0      1777253 35 +  4147112 ACAATTTTCATCTAATGGAGAATGCACTCTTCCAA---------
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeRem4.Crem_Contig0   497814 42 -  4500979 I

a score=-10977.000000
s ce10.chrX             3353668 59 + 17718866 ggtgcgcgcctttgagaagt-----------------------actgtaatttgaacctttaattgctgGTTTTTCTTTGGT-
s cb4.chrX              8438466 83 + 21540570 agtacatatattttgaaattttcagacgaatccgaaaatttgaactaCTTGTTcacaacttcaaaatttatctTTCACTGAAT
i cb4.chrX              I 14 I 21
s caeSp111.Scaffold629   611733 10 - 33334924 ----------TATGGGAACC---------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1777288  7 +  4147112 -------------AGCAACA---------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeRem4.Crem_Contig0   497814 42 -  4500979 I

a score=16033.000000
s ce10.chrX             3353727 381 + 17718866 TAGTCATATT---------------------------------------TTAAAGTTATGCGAAGCTCCTGAGATTACTAGACCTATACAAAAGATTTTCAAGGAAGGAAATTTCGCTTTTCAGTTTGAAACTACTCTATTAT-CCCCTTGTGAAATCCAAAACt--------------atttttaaaaaagttaa---tttttaactgatttgaaaaatattt------ttattttattttat-------tttttGTGCATGTTTGTTTTTC-CTGTTGCAGA-AAACTTCAAAAAAGCAAAAAAGGCACTTCCTCTC--------ATATTCAAAATCTCCACATTTTTTCGCGTTTTTTTT-------TGATTCACATGTGGCACCGATT-------TCCAGTTGGATCACTTTCTTCAC----TTCCAATTTTC------CCCGCCGAAGCT----CTCTCGTGTGTAAGAGTGTTTTG----AAAATTT
s cb4.chrX              8438570 405 + 21540570 TAATCCTGTTT----TaccgaaatttcaattattttgtgattctgaattttgtagtttctcAGAACCCC----ATTAA-AGACTTCATCACCAA---------------AAATCTGGTCAGCAGATTGAA--TACAatattttctctgtttttcaaaCTAGCATTCTCTTCTCATTACTAGCTCTCTAAAATTCAC---CACGTAACCAAT------AGTTTCCTTTATGCTgtcttttcttgaaaaacttttttcatt----cttgtttttt------------------cagttGCTAGAGAAAAGCACTTCccttctcgaaaaaaaactcgcaacc------atttttctcgttttccttgactttttttttcacatgtGGCACCGATTCTGTCCGTCCGGATGGATCGCTTCCGGCGGGTTCTCCCCATTTTCACACAGA---------------ATCCAAAGTGT-------TTTTCCGTtgaaa---
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   497856 340 -  4500979 TAAACATATTTTCCCTACCAAAA--------------------------TTGTACTTTC-----------------------CTTGATCACAAA--------------TTGACTCAACCAACAAATTGAA--tacaatattt--tttattttcgagtTTGGCtctttttcccca-----attttgcCAATATTGGCTTGCACGTAACCCAT------AGTTTCC----TGGCGTTTTCTCCttcaa-----ttttc---------tgtgtttt------gcaga------aaaaaaaacagaaaaaggcaCTTCCTTCC--------AAAATGGCAAcc-------cttttctcgttttcctga------tttttcacATGTGGCACCGATC-------TCCGGATGGATCACTTCCGGCGG----TTCCAATTTTCCTAGGGCCC-----TCTT----ATTCGATGTGTAAGAGTATTTTc----aagattt
i caeRem4.Crem_Contig0  I 42 I 24
s caeSp111.Scaffold629   611743 255 - 33334924 ------------------------------------------------------------------------------------CATTCACA----------------------------------------------------GTTATTTTGAGTTTCG-------------------GTGTCTATAG-GTT------CAGGTAACCgat--------tttct------gagtttttttctag-------tttttgtg----catgttttttcctgtttcagg-------------AGGAAAAAAGGCACTTCCTCCA--------AAACTCGCAAcc-------cttttctcgttttcctgG------TTTTTCACATGTGGCACCGATC-------TCCGGATGGATCACTTCCGGTGG----TTCCAATTTTCTGGGGGTCC--CGCTTCTCCTACTCCAATGTGTAAGAGTgttttc----aagattt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1777295 298 +  4147112 ------------------------------------------------------------------------------------TAACCATAAA-----------------------TCAACTGTGTGCT--TATACCAGCGG-GCTTTTTTGGGGTTTA-------------------TTCTATTTAGTGCT------CACGTAACCAAT------AGTTTCC------Ctgttttctgcttt-------tttttgcgTGTATGTGTTTTTTCCTGTAGCAGGaaagcgaagaaaaaagaaaaaaggcacTTCCTTCC--------AAACTCGCAAcc-------cttttctcgttttcctgg------tttttcacATGTGGCACCGATC-------TCCGGATGGATCACATCCGGCGG----TTCCAATTTTCTTGAGctccg-caatttt----tttcaatgtgtaAGAgtgttttc----aagattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-2627.000000
s ce10.chrX             3354108 18 + 17718866 CATCGAGGGGCAAGAG--CC
s cb4.chrX              8438975 15 + 21540570 ---tgagaagaaggagga--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   611998 13 - 33334924 ---caatatgaagaag----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1777593  7 +  4147112 ---caat------gAG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeRem4.Crem_Contig0   498196 24 -  4500979 I

a score=21669.000000
s ce10.chrX             3354126 418 + 17718866  
s cb4.chrX              8438990 424 + 21540570  
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   498220 435 -  4500979  
i caeRem4.Crem_Contig0  I 24 I 55
s caeSp111.Scaffold629   612011 423 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1777600 486 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-7719.000000
s ce10.chrX             3354544 36 + 17718866 ATGTGGTACATTTTGGTTTAAGTTTTGTTTTCAA---CA--------------------------------
s cb4.chrX              8439426 36 + 21540570 ctattttccgTGTTGTTTGAGATCCGATGTATAA---CA--------------------------------
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold629   612434 68 - 33334924 tcatatttctatttgaaccaatttctgtttctca---tAGTTCcgactcttttcttttattataGAACGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778086 55 +  4147112 ctcttttcct-----------tttcagtcTATTGAGCTATTCCTGGCTCTCTTATATTCTT-----TCGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I
e caeRem4.Crem_Contig0   498655 55 -  4500979 I

a score=17496.000000
s ce10.chrX             3354580 50 + 17718866 -----AAACATGTT--CTCACTACAGCACATTATCTTGT--TCTTTATTACCTTCTATT
s cb4.chrX              8439462 54 + 21540570 ---TATAATATTTCGTTTCAGAACAACATATTATCTTAT--AGTTTATTACCTCCAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   498710 57 -  4500979 ACACATATTACTAC--TCCACGAAAATACATTATTGTATACATTTTATTACCTCctatt
i caeRem4.Crem_Contig0  I 55 C 0
s caeSp111.Scaffold629   612502 50 - 33334924 -----TGAGATATT--TCCACAAAAACATATTATCTTAT--ACTTTATTACCTCCCATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778141 50 +  4147112 -----TTATTCTTC--TGCCCAACAACACGTTATCGTAT--ACTTTATTACCTTCCATT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-6370.000000
s ce10.chrX             3354630 33 + 17718866 AGTAGAGTATGGCGATTTGCAAGGAGAGCACGC---
s cb4.chrX              8439516  7 + 21540570 ------TTCTT--------------------AC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   498767 20 -  4500979 ------ttctgaatatatgTAAGA-------AC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   612552 12 - 33334924 -----------------TGCcata-------tctgg
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1778191  6 +  4147112 I
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=-1039.000000
s ce10.chrX             3354663 72 + 17718866 CAAAAAAAAAAACGTTGACAGCAATTGTCTTG------------TGGTCTATT--------CT------GAATTATTGGTGGTTCGTGGCCATATTAG
s cb4.chrX              8439523 64 + 21540570 ----TGGAACAATTACGA---TGCCTTCATTC------------TTGCCCAACTCTGG---ATCCCCTAGAATTAT---TGGTTTTTA---------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   498787 61 -  4500979 ----TGGAAAAA----GA---CGATTGTCATC------------TGGGCCTTTTTTGG---CT------GAATTAT---TGGTTTGTGCCAAGAC--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   612564 72 - 33334924 -----aaaaatacTCCGG---caattgtcttctttttctttttctggacCTTGTCTTGT--CT------GAATTAT---TGGTTTGTGCC-------A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778197 68 +  4147112 TATCTAGAAAAACGCTCA---CAATTGTCTTC-----------ATGGGTCTTGTCTTTTTCCT------GAATTAT---TGGTTTGAGCC-------T
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18194  274615 2046 +   823664 I

a score=58376.000000
s ce10.chrX             3354735 130 + 17718866 AGTTGAGGTTGGCTCAAGT---AGTATTCAACCTCTTCA----------GTCCGAC---TCGATCT----------GTCAAGTAGAGC-AGCAGAGCAACACGCCTTAAGTCTCTGCCAATGGTCAAGTA----GCACA-AAGTATCATTTCATCATCGTAA
s cb4.chrX              8439587 133 + 21540570 GGGACCTTCCAACTCATGT----------ACCCTCCCCGC----CTCA-ATACGTCTTCTCGATCCTCAAATTCCTGTTAAGT-GAGC-AACAGAGCAACAC-CCCC--GTCTTC----TCGGTTAAGTA-----TACCAGtgtatcattttatcattgtGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   498848 142 -  4500979 AgggggggCCGACTCAAGTAGTATTATTCAACCTCTTCACCCTGCCCA-GTACGTCT--TCGATCC----------GTCAAGT-GAGC-AACAGAGCAACAC-CCTCAAGTCTCTACCAACGGTTGAGTA----GCACAAAAGTATCATTTCATCGTTGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   612636 133 - 33334924 AAAAACGACCGACTCAAGT---AGTATTCAACCTCTTCACTCCGCCCC-ACACGTC---TCGATCC----------ATCTAGT-GAGG-----GGGCAACAC-CCTTAAGTCTATGCCAATGGTCAAGTA----GCACA-AAGTATCATTTCATCATCGTAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778265 140 +  4147112 AAAAACGACCGACTCAAGT---AGTATTCAACCTCTTCACTCCGCCCCAACACGCC---TCAATCC----------GTCAAGT-GAGGCTACAGAGCAACAC-CCTTAAGTCACTGCCAATGGTCAAGTA----GGACAGAAGTATCATTTCATCATCATAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  276661 119 +   823664 AATTGTGGCTGGCTCAAGT---AGTCA--ACCCACTTCACCCCGCCCA-----------TGCATCT----------ATCAAGT-GAAC-AACA-------AC-GCTTAAG------CCAGTGGTCAAGTAGCAAGCACA-GAGTATCATTTCATCATCAGAA
i caeJap4.Scaffold18194 I 2046 I 117

a score=-17942.000000
s ce10.chrX             3354865 113 + 17718866 TG---TAGATGCTTCGTATGCTTTTTCTTTTCTCTTTTTTC-----------TTGTCCCGGAATAACA----TAGTACACGAT-------TTTGCGCACTTCTTGCAG-------ATGTCAGGAACTTTTGCAG-TTTTTGAAATA----------------------------------------
s cb4.chrX              8439720 118 + 21540570 TGCTCCGAATGCTCCTTATtcatcattttctcttttcttttgacTCGTTTTGTGGTCCC--TGTAGTTGTCCTCACAAACGTT--------TTGC-----CTCGGTGC----------CCATGAACGTTTTTTC---TCTGACGTA----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   498990 111 -  4500979 TG---CAAAAGATTTTTCTGCGTTTTCTggtcttttttcttg-------ttcttgtCCT--CATAATT----TAGCAGAAGGT--------TTGCG----CGTGGTATCAAACAGATGCTAAGAACACTTTT-------TGACGTA----------------------------------------
i caeRem4.Crem_Contig0  C 0 I 266
s caeSp111.Scaffold629   612769  92 - 33334924 TG---CACGAGCTTCGTATG------------ttattctt------------ttgtttc--catCGTG----AAGCAGAAGTT-------GTTTC-----TTTTGCAG-------ATGCTAAGAACACTTGCTC------------------------TTTCTCTGAC------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778405 148 +  4147112 TG---TATCAGCCTCCTATGA----------TTTATTTCTTC-------CAGTTGATCT--CATAAAG----AAGCATAAAATAGCAAAAGTTTC-----TCTGCAAA-------AGCCCAAGAACATTTGTCCTATTCTGACGTATGTTAGGGCTTGTTCCCCAGACTAGATAATTGCTAAATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I

a score=-8725.000000
s ce10.chrX             3354978 53 + 17718866 ACATTTTAAGAGCTAGCGCTAGATACAAAAATATTGTTTC------TAGATA-------------------AAGCATT
s cb4.chrX              8439838 51 + 21540570 TC---------------------------ATGCCTTTTTTGAAGACTAGATAATTGGGGACAAAAACACCAAAGcgtt
i cb4.chrX              C 0 I 234
s caeSp111.Scaffold629   612861 11 - 33334924 -----------------------------GTCCCTGTTTC--------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778553 45 +  4147112 ACTTGTTATGAGTTTGC-----------AGTGAATGTTTC------TGCATGGTT----------------ATGCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-17502.000000
s ce10.chrX             3355031 206 + 17718866 CAATATTTGGAATGTTAACTAATAAATGGTAAGCCTAACTCAAATATTGTTATATTTGGAGAT---------AAAATACCCATAAGACATAGTAAAACATTTTAAA-----AATTCCAAATTGTTTAACACC--TTGTCAAAAGCTACGATTTAATATATGAAAAATATTTAATCCTAGTGATCCTAAAACAATAGAAAGCTTT------AATATTTT----------------------------------------------CTGTAGGGCT-----------------------------------------------------------
s caeSp111.Scaffold629   612872  96 - 33334924 -------------CTTGACTATATAATTGC------------------------------------------AAAATG---ATCTG-------------------------AATGTTGTTCTTTTAgttaacattttt-------------------tgacgaaaacA-----------CGATCAT------------TGCTTTTG----TGCATTCG----------------------------------------------CAGTTCG--------------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778598 315 +  4147112 TGGTCTTTCGTAACTTTACTAACCAATTGCTAtcc-aacacatttttttttgatactgaaggttaatgaagaaaaatt---atccGAGTTGATAGGATTTTTTCCTATTGTAACTTTGTATTGCTAGACATCAATTTTATCTGGATTCGTTCTCATCTGATGACAACA------------GTTCATTACACAAT--TATGCTTTTGAAAAGGAATTCGAAAGGCAGTAGTTGCCAATCATGAAAACTGATCAAATTGAACACATCtgtttggaaatcaaaaaaccgaCATAATTTATTTCTTGATAGAAGGTTCTAGGACGGTGTGTCAGACT
i caePb3.Scfld02_0      C 0 I 74
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8439889 234 + 21540570 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-382.000000
s ce10.chrX             3355237 13 + 17718866 CCCAAATGGGAGC
s caeSp111.Scaffold629   612968  6 - 33334924 TCCAAT-------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1778913 74 +  4147112 I
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8439889 234 + 21540570 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-803.000000
s ce10.chrX             3355250 24 + 17718866 CAAAAacgccgcaatccaaatctt
s cb4.chrX              8440123 24 + 21540570 cagaaactcagcatttcagaattt
i cb4.chrX              I 234 C 0
s caeSp111.Scaffold629   612974 22 - 33334924 -ACATAGTTGTAATACCAGTAAT-
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1778913 74 +  4147112 I
e caeJap4.Scaffold18194  276780 117 +   823664 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-2403.000000
s ce10.chrX             3355274 25 + 17718866 ---taaagcgatac-gcggaacccaaaaa
s cb4.chrX              8440147 28 + 21540570 cagaaactcagaatctcagaatctcaga-
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold629   612996 11 - 33334924 ---TAAAGCAAAAC---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1778987 24 +  4147112 ---GAAACCATAAT--TGGAATTCTAAAA
i caePb3.Scfld02_0      I 74 I 44
e caeJap4.Scaffold18194  276780 117 +   823664 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=0.000000
s ce10.chrX             3355299 8 + 17718866 gtgtcgga
e caePb3.Scfld02_0      1779011 44 +  4147112 I
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440175 18 + 21540570 I
e caeSp111.Scaffold629   613007 0 - 33334924 C
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-16909.000000
s ce10.chrX             3355307  81 + 17718866 cgcggaa----------------------------caaagtt---------------------------------------tgaa-------------ctaaatat-----------agggtacggctctatttggtgcaaactctgcttcgcgtacga----cacttttcgggtt
s cb4.chrX              8440193  81 + 21540570 -----------------------------------------c---------------------------------------tcagaacct--------ctgaatctctgaaccTTATAATAT-GATTTTTGTTtcgaattaaattt--tttttctccaa----caAATTGCCGGCT
i cb4.chrX              I 18 C 0
s caeSp111.Scaffold629   613007  66 - 33334924 -----------------------------------CAGAATT---------------------------------------TGAGAATAGTTATCA--CTGTATTT-----------AAA---TATTACTG-----AATCGAATTT-----------GA----TACATTTTGAGAT
i caeSp111.Scaffold629  C 0 I 78
s caePb3.Scfld02_0      1779055 162 +  4147112 cgcgtgAAAACAAAGCGGATCGTACGATACTAGATCAATATTAGATCAACTCTACTTGCAAGTCTGGTAccagaacaaaaatgaaaactataataaatttgtatttttg--cttcaaaaatt-tagtactgtccaaaataaaatct-----------ggagttcattttctgagtt
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=311.000000
s ce10.chrX             3355388 2 + 17718866 tc
s cb4.chrX              8440274 2 + 21540570 TC
i cb4.chrX              C 0 I 223
s caePb3.Scfld02_0      1779217 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I
e caeSp111.Scaffold629   613073 78 - 33334924 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=186.000000
s ce10.chrX             3355390 4 + 17718866 gcgc
s caePb3.Scfld02_0      1779219 4 +  4147112 tcgc
i caePb3.Scfld02_0      C 0 I 110
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440276 223 + 21540570 I
e caeSp111.Scaffold629   613073 78 - 33334924 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=0.000000
s ce10.chrX             3355394 99 + 17718866 atcgctttaaagaGAGAGAGAGAGAGGTGTTTGCGGCGCCCACATGGGGACCCTCCTGTTCAGAGAATCAGCCGCCTGGCGAAAAGGTAACGATCGAAT
e caePb3.Scfld02_0      1779223 110 +  4147112 I
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440276 223 + 21540570 I
e caeSp111.Scaffold629   613073 78 - 33334924 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=274.000000
s ce10.chrX             3355493 26 + 17718866 TATGTTTCCACTTTACATTTGTTTTA
s caePb3.Scfld02_0      1779333 26 +  4147112 TATGTTTTCTTCATTGATATAATCAA
i caePb3.Scfld02_0      I 110 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440276 223 + 21540570 I
e caeSp111.Scaffold629   613073 78 - 33334924 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-571.000000
s ce10.chrX             3355519 79 + 17718866 CTATTT--TTATACTCTGTTGAAAAATTAATAGT--GCAAGGTATCATTTGCGTAA-TCTCAAAT----------CCGACAATATGGAAGTTAT
s caeSp111.Scaffold629   613151 92 - 33334924 TTATTT--AGataatcaattcaaaaacaaaaatttacgaatacttgtttttcatgattcCCAATTTACCTCTCCATTCTGAATATCTAATTCTC
i caeSp111.Scaffold629  I 78 C 0
s caePb3.Scfld02_0      1779359 84 +  4147112 TTATCTCCGAAGAACACATTGAATAATGAATAACTGGGAAGTTGTATTTTGCACCTGTTCCAAAT----------ACCTGAATATGCATTTAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440276 223 + 21540570 I
e caeRem4.Crem_Contig0   499101 266 -  4500979 I

a score=-1724.000000
s ce10.chrX             3355598 22 + 17718866 ------TCTC-ACACACT-------GCCTCGAAAGT----
s caeRem4.Crem_Contig0   499367 22 -  4500979 ------tCCCAAC------------CCCTTCAACAAAATT
i caeRem4.Crem_Contig0  I 266 C 0
s caeSp111.Scaffold629   613243 29 - 33334924 GCCCATTCACAAAACACT-------Ctctccaaaga----
i caeSp111.Scaffold629  C 0 I 8
s caePb3.Scfld02_0      1779443 36 +  4147112 CCTCATTCTCAATATATTCAGCCCAcactccaaaaa----
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194  276780 117 +   823664 I
e cb4.chrX              8440276 223 + 21540570 I

a score=894.000000
s ce10.chrX             3355620 10 + 17718866 --GGGC----ACCACA
s cb4.chrX              8440499 16 + 21540570 GGCCACTCCAATCCTC
i cb4.chrX              I 223 C 0
s caeRem4.Crem_Contig0   499389 14 -  4500979 --GAGCTTCGGCCCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   613280 14 - 33334924 --gagctTTGACCCCA
i caeSp111.Scaffold629  I 8 C 0
s caePb3.Scfld02_0      1779481 14 +  4147112 --gagctttGACTCCA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194  276780 117 +   823664 I

a score=177478.000000
s ce10.chrX             3355630 372 + 17718866 CTCTTC--CCCCGACAAATTTCTAA-TTCTCAACTCCTAATGTTTATACAAAGGAATTAATTTGTTGGTC--AAAAAACAATCTCCGCG-CCCAACG----CC---TTTCCTC-----------ATTTTAGTGAGAAGTGGGGTAGT------GGAGAATAAGCAGAA-----------------GGAGGGCG--AAGGCTCGAAGT-GGCTCATAAACGATCTGCAATTCGACActtcttttttc-ctccttcttctcgtt------ttttttcctt---------tctta-------ttcttctccttttc---------ctccAGTCAGGCCGTCGTTCC--AGTGTCTTCCAA--CTTTGCGCG-TTTATTTTG----------AGAAATCCGTCATGTTTTTTTTCTCGGCAATATTTTTCATCTGTCTTATTTTCTTCATTTTTTTA---------TATTTTCTGCAACTCC--------
s cb4.chrX              8440515 429 + 21540570 -----C--TCCTGA-AAATGCCTCATTTCTCG---TGTGATGTTTACACAAAGCAACTAATTTGTTGGTC---AAAAATAATCT-CGCGCCCCAACGAcgccc--atttttttcttgcttgTCGGTTGAAGTGAGAAGT--GGTATTATATTGGGAGAGGAAAgagtagaaaaatgaaagggCGGAGAGGGTGAAAAGGCTCGAAGTGGGCTCATAAACGATCTGCAATTCGACActtctttctcctcttctcctccctcttccttctttttttgctttattcttattcttattctgc-ttcttcttctttttttcctattcctCTAGTCAGGGCGTCGTTCC--AATGACTTCAAATGTCTTCAAAG-TTTATTTTG----------AGCAATTCGACATGtttttct----------atgctttctctattttttttcctattttttttca------tcctattttttccagcttC--------
i cb4.chrX              C 0 I 107
s caeRem4.Crem_Contig0   499403 372 -  4500979 C---AC--TCCTGA-AAAATGCTCA-TTCTCG---TTTGATGTTTACACAAAGGAACTAATTTGttggtc--aaaaaataatcT-CGCG-CCCAACg----cc--atttcttc-----------atttgagTGAGAAGT--GGTatt------ggaggaggagaaggagaaaa------------agagggcg--AAGGCTCGAAGT-GCCTCATAAACGATCTGCAATTCgacacttcttttttc-ctccttctcctccttccactattcttctctttttttttg-tcttattctta-ttcttctttttttt---------cttcagtcaGGGCATCGTTCC--AATGTCTTCCAA--CTTTCTGCg-tttattttg----------agaaatccgacatgttttt--------------------tctattttttcttctttttttcttcaatg--ttCCGTTTGATGTGAGA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   613294 358 - 33334924 CTCTAC--TCCTAA-AATATTCTCA-TTCTCG---TTTGATGTTTACACAAAGGAACTAATTTGttggtc--aaaaaataatct-cGCG-CCCAAcg----ccatttttcttc-----------attctagTGAGAAGT--GGTATT------GGAGGAGAAGC---------------------GGAGAGCA--TAGGCTCGAAGT-GCCTCATAAACGATCTGCAATTCgacacttcttttttc-ctcctcctttttctt------tttttttct----------tcttattc----ttctacTCCTATTC---------CTCCAGTCACGGCGTCGTTCT--AATGTCTTCCAAC-TTTCTTCCg-tttattttg----------agaaatccgtcatgtttttct------------------atttttttctgttcttgttttttcaactgCTCCCctattgttttgattttg--------
i caeSp111.Scaffold629  C 0 I 35
s caePb3.Scfld02_0      1779495 356 +  4147112 CCCTCCAACCCTTA-AATATTCTCA-TTCTCG---TGTGATGTTTACACAAAGGAACTAATTTGttggtc--aaaaaataatct-cgCG-CCCAACG----CC--TTTTCCTC-----------ATTCAAGTGAGAAGT--GGTATT------GGAGGAGAAAC---------------------GGAGGGCG--AAGACTCGAAGT-GCCTCATAAACGATCTGCAATTCGACActtc-tttttc-cgcctcctccttc--------tttttttct----------tcttattcttattttttctactcttc---------ctccAGTCACGGCATCGTTCT--ACTgtcctccaac-ttttttctgttttattttg----------agaaatccgtcatgtttt----------------------cttttctattttttctattttttgactagattccttttgttttGATCTCA--------
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18194  276897 352 +   823664 --ctcc--tcccAC-G------TCA--TCCAA---TGCAATGTTTACACAAAGAAGTAAATTGTCtggtcaaaaaaaataatct-cGAG-CTTGACG----TC-----------------------TTGAGTGGGAAGT--GGG---------TGAGAAGAA-----------------------GGAAAGCA-AAAGGCTCGAAGT-GCCTTATAAACGATCTGCAATTCGACACCCCCCAGtcc-tccctcatttccatcc-----ttccttcct----------tcttcct-----tcctcctttttttc--------actccAGTCGCGGCATCGTTCCCGAATgtcttccaaattttttcgcgttttgttttgaaaagaacgaaaaaattcgacGTGCTCTCTT---------------TCCCTCCtcctctttttcttatttttgca---------tttttttttcgccttctCAGTTCC
i caeJap4.Scaffold18194 I 117 C 0

a score=-2754.000000
s ce10.chrX             3356002 8 + 17718866 AAATCACT----
s caeRem4.Crem_Contig0   499775 6 -  4500979 --AGGAGG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   613687 8 - 33334924 TGattggt----
i caeSp111.Scaffold629  I 35 C 0
s caePb3.Scfld02_0      1779882 8 +  4147112 AGATTGGt----
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold18194  277249 8 +   823664 ----CAGTTCCT
i caeJap4.Scaffold18194 C 0 I 1194
e cb4.chrX              8440944 107 + 21540570 I

a score=11127.000000
s ce10.chrX             3356010 113 + 17718866 ----AAAAGAGAGAATATTCAT------------------------ATGGAGAGGAAAGAAAATGAGAACCGGATGA-----CAACATTGGGGGGTCC----AGTCCAGAAGGATCAGATC--AAAAATCCCATTTGTAACCTCCCTCT----CGT
s caeRem4.Crem_Contig0   499781 140 -  4500979 ----GAAGCCTGAGACTCTGCCGTTTATCCCAAAATATCTGGACTCTttga--agaaaggaaatgagaaacGGATGACAATTAAATGTT-GGTGGTCC----AGACCAGCCGgaccaattc--aaaaattctatttgTAATCTCTTAGTTTAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   613695 112 - 33334924 ----gaaaaataagaaacgGATGAC---------------------Tttgactagaaaaaagagaagaa------aa-----aaacact-ggTGGTCCGGCAAGTCCAGCTGGtcctatttgaaaaaatcccaTTTGTAACCTCTCTAT-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1779890 128 +  4147112 aagaaaagaataagaaacggatgacaat-------------gagatttcgagaagagaaaaaagaagaaagggacAA-----AAGTAGC-GGAGGTCCAGTTAGTCCAGTCGgaccaattc--aaaaatcccatttgTAATCTCTGTGT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  277257 1194 +   823664 I
e cb4.chrX              8440944 107 + 21540570 I

a score=116496.000000
s ce10.chrX             3356123 351 + 17718866 -GCCGT---GTGGAAC----------GCAATAGATAGCAAAGGGAACCACATTATCCT-ATGA--CTCGTTCTCC-TAGTATCCGGGCCCCGGCCGGCTTGTTTTTCGACTCGACTG-----------ACTGAAGTGGATAAGTGACGGAAGTGATTTCCTTTTGTTCCGCATGCAGTTCGTTTTCCATTTCCAATAAATAAACGCATATACCCCCC--CCCCCCC-CCCCCACTAACA-----------------------TTCTCATGCTCCACTAATTTTTTGTTGAAAAA--------------------------AAAAACGCATATTTGGTACGCGACCTCAGGGTACATGCGGAAACTTTTGAAATTTTTTTGGTGTGTCACGTGCC--GGAGCA-TTTTTGAAACGGCGAA---------TCGTGGAGGTCGAATT
s cb4.chrX              8441051 392 + 21540570 -GCCCT---ATGGACCTAAATATTCTACAA-AAACAG--GGTAAAACTACATTATCTTCCTGA--CTC--TTCCCATCGTATCC--GTA-------TTCTGTTTTTCGACTCGAACACAGACAACCACACAAAAGTGGGAAAGTGACGGAAGTGATTTCCTTTTGTTCAT--TGCGGttcgttttctcttttttctccacaAA--TGCACACCCA----TGCTAGGAACCTAACTAACTTTCCAACCTTCCTTTTC-AGTCTTCTTCATTCTTCACTAATTTTCTGGGATCTGAGAAGCTatggaagcaaaaaaaaccgcCGAAACGTAAATT-TTGGTGCA--------------gagaaaac-ttggaaattgtTA------GTCACGTGCCGagcgaca-tttttgaaatgatcgagattttttttcgtggaggtcgtatt
i cb4.chrX              I 107 I 1491
s caeRem4.Crem_Contig0   499921 352 -  4500979 ---------ATAGAACGGGACA----GCAATAAATAG--TAAGGAACCACATTATCCT-ATGA--CTC--CTCTC-TTGTATCCTAGCC-------GTTTGTTTTTCGACTTG---------------ACAGAAGTGGAAAAGTGACGGAAGTGATTTCCTTTTGTTCCGCATGCggttcgttttcttttttctacacatACA--CACATACCCGTC--TGTTAGG-TTCTAACTAACATCCCAACCTT-CTTTTC-AG---TCTTCATGCTTCactaattttttggaaaccgA------------------------ACAAAAACGTACATTGGTGGTGCAACC----GACAAAGacggaaat-tcggaaattgTCG----GTGTCACGTGcc--attacatttttttaaacgacCAA----CTTTTTCGTGGAGGTGGTCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   613807 352 - 33334924 GTCCGT---GTGGAAC----------ACATCGGATAG--AAAGGGACCACATTATCTT-ATGACTCTC--TCTCC-TAGTAT-CTATCC-------GCTTGTTTTTCGACTTG---------------ACAAAAGTGGAAAA-TGACGGAAGTGATTTCCTTTTGTTCCGCATGCggttcgttttcttttttctac----------aaacATCCGTCAGAGTTAGG-TTCTAACTAACATTCTAACctt-cttttc-aa---tcttcATGCttcactaattttttttggggagg-----------------AAGAAAGGCAAAAACGTACATTGGTGGTGCAACC----GACGAAGAcggaaat-ttggaaattgtcG----GTGTCACGTGCC--atgaca-tttttgaaacgacCAC----AAATTTCGTGGAGGTCGGATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1780018 340 +  4147112 GCCCGTGTGGTGGAAC----------GCATCGGATTG--AAAGGAACCACATTATCTT-ATGA--CTC--CCTCC-TAGTATCCTAGCC-------GCTTGTTTTTCGACTTG---------------ACAGAAGTGGAAAAGTGACGGAAGTGATTTCCTTTTGTTCCGCATGCggttcgttttcttttttctac------------acaCCCGTC--TGTTAGG-TTCTAACTAACAttccaacctt-ttttttgag---tcttcatgcttcactaatttttttggaggaga-----------------aaaaa----accgaCGTACATTGGCGGTGC------------AAGACGGAAAC-TTGGAAATTGTCG----GTGTCACGTGCc--atgaca-tttttgaaacgacCAG----AAATTTCGTGGAGGTCGGATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  277257 1194 +   823664 I

a score=-48690.000000
s ce10.chrX             3356474 291 + 17718866 ---------------TTTTCCCATTTATTTTTTTAG--------TATATTCTGGGAGTAA--ATATTGAAAATCACAGTTCC-----------------------------------------------ATTAGAAA------ATTTGTGAATATTCTACAATTTTCATTAAAGTGAGATATcag--tgggga----a-------------------attgc----tttaaaacgtgcatggcataacaaAAAATAACTCACTTAATTTAATACCCCCCC---CCCCCAAATTTTAA----------------------AATTTCACTCATAAATTCTT------TAAGATTCTACAACA--------------------------------------------ACTTGCGAAAAATTAA-AAACATTTTTTTA----------TACAGAAATTCCATGACAATTATTATAAACCAG-------ATTTTTA-
s caeRem4.Crem_Contig0   500273 457 -  4500979 TGGTAGTTTCCTTGCtttttttATAAACTCTTATAGAGAC----TGTTAAtagaacaaaataataaattgaaaaagaatactggctgaaatcagttttttaataGGTGTATTGTTTTTTGGTTCATTATCTCGAACGACCAGtaatcacaacttttttgtaatttaaaCTAAAATGTGAT-TCAAACTGAAGATTTTATTGCCTAAAAAAGAGTCATGTTAT----TTGAGAAAGTTAATGT--TAGTTTGCTGAGATTCGCAAAAGTCTGCTTCAATATTCAAATCACTATCTAAT-TgatgacttcatttttctgagaacCTAGTCTAATATCTTTG------GTAAATTGTCTTATG----TTAGTCCAGACTCTGTCATtataaataattcaaaaatagtgttttgaaaatatgaattttcatttgtttACAGTACCACCAGTTAGAATAGTA-------GATTTCaaaccaat------aatttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   614159 256 - 33334924 -GG-----TTTTTGGTAGATCTAGCCAATCTCATAGAGCTAACTTATTCGAAGTGAGCAATTATaacggaaaaatgaaaaac-----------------------------------------------atgaaacg-----------------------------AAATAACAcaactt-ttct--caaaatttata-------------------CTTAT----CGGAGAAG-----------------------------------TGTATCTTAAT---TAATGCAGTTTAAC----------------------AATCTCTTATGTTAACTCCTTGATAGGCCGATTTTCTCCCA-----------------------------------------TGCATT------ACGCCTA-ACCCATTACTCTG----------AACTCAAAATGT---------GCTTTCAATCGTTCTTTGCATTTCGT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1780358 317 +  4147112 -GG-----TCCTTGGTAGCTCAAGCAATTTTCATAGAGCTAACGTTTTTCTCTGGAGTCATTATCCTTGAAAGAAGAAGCAC--------------TTTCACCAGG-----------------------ATGGAGAG-------------------------TTCcaattaaaatgaaat-tgga--tgaGAATTCTA-------------------GTTATGGAACTGAAAAG----------TAGC---------------AAAGCCTATTTCCCTAT---AATTCTAGTTTCACGTATTGAGTTCA-------GAGAATCTAGTTTA-CAACTTTT------GCAGATATCAtccaagaaatggaaaaaaa-------------aatcattctaaaTTTGAGTTTCTAAGACACGca-tctcatt--tttg----------aactcgaaaaac----------tTAGGAACCATT------ATTTTCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  277257 1194 +   823664 I
e cb4.chrX              8441443 1491 + 21540570 I

a score=7417.000000
s ce10.chrX             3356765 63 + 17718866 TCGTTTCTCAGTGTCCATCGCCAGTTTTCCGTTTTCATCAACTTTT-------CTGAATCATCAATT-CTC
s cb4.chrX              8442934 67 + 21540570 tcgtttttctgtcttc----cccttcttcttcttctttcaacttttcttcCTCCTGATTCACCAATTCTCC
i cb4.chrX              I 1491 C 0
s caeRem4.Crem_Contig0   500730 60 -  4500979 tcttttttgttcctt-------ttttctgttctttcctcaactttcat---tcctgattcatcaatt-ttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   614415 51 - 33334924 ----TCTTATGTCTT------------TATACTCTCATCAACTTTCCATT---CTGAATCATCAATT-CCC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1780675 50 +  4147112 ----TACTTTGtcgt------------tattcttttttc----ttccattctccTGATTCATCAATT-ATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  277257 1194 +   823664 I

a score=67779.000000
s ce10.chrX             3356828 306 + 17718866 TTATTTACTCTCTG-----------------CCTTTCTTTGTTTCCTCTGTTCTGGTCCCGA-TACTGGAAATGTGCTGTCTCATGGAAATTTC---CATCTCC----TGATGACG-------CACAATAC--CTCTTCCTGACGCTTTGACACTTTAACTGCAAAAATCGGTGCTC-----TTTTTATTTTAGAGCTT-TGGATGATTCCGT--GATTCCAGAA---TCCAATAATGTGGCTGCCGAAATGTATGTTTACTCG----------TAAATGT--TTG---------TATGTGTAGATGTGC-----TGTGTGT---------ACGCTCAATT--CAAATAGTCTAGAAG--------TTTAC----------------------ACC--CGACCACA-AGTTTTAAAA---------------------------ATGC
s cb4.chrX              8443001 352 + 21540570 TTATTTACTCTTTGTCgcc------------tttctctttttgtttcc---tCTGTTCTTGGTCCCTGATTCTGAGGTGTCTGACGACAA-TTC---GCCCATC----TGATGACA----CATCATCATCT-CATCTATTTGACgc------atttttact-caaaaatcgGTGCTC------TCTTGTTTTAGCGCTT-TGGATGATTCCGtgagattccagaaaattccaataatGTGGCTGCCAAAATGTATGTTTACGCAAGGGTATTCATTAGTGTGATTCTATTGT---TTTGTG-AAACGTGT-----AATGTGT---------CCTTTAAGTTCGAAgataatcccaaaaaaaaaatgtttctttgt------------------gtc--ttaaaa--------caaaaaaacgggCC---TAAATTGCTC-----TCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   500790 357 -  4500979 ttatttactTCTTGACGCC------------TTTCTCTTTGT---------TCAGATTTCCATCAGAAGGCTGGAGCCGTCTGACGACAATTTC---TGCCTTT----TGATGACGCATCCatcctcatct-tcttttcttaaCGC-------CTATTACT---AAAACCGGTGCCC------TTTTATTTTAGAGCTT-TGGATGATTCCGT--GATTCCAGAA---TTCAATAATGTGGCTGCCAAAATGTATGTTTACGCG--------TTTCAATGTGGTTCAAATCTGTGTTTGTGTAGATGTATTTATGAGCGTATTCGTGTCCACCCTCAAATC---AAATAGTCTAGTAAA-------TTTACCCGTC------------ACGTAATT--TTAACacattgtttcaaaacgacaAGAT---TGTGTCGATG-----CCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   614466 335 - 33334924 TTATTTAC---GTGTcgc-------------tttttctttgtctcttcttccttgGTCCCAAATAGGAGGATGGTGTTGTCTGACGACAATTCC---CCCCTTT----TGATGACG-------CACCATCC-TCATTTCTTGACGC-------CTTTTACT---CAAATCGGTGCTC------TTTAATTTTAGAGTTT-TCGATGATTCCGT--GATTCCAGAA---TTCAATAATGTGGCTGCCGAAATGTATGTTTACGCG--------CTTT-------CTC---------GTTGTGTAGATGT----------GTGT---------ATGTGTAGTC--ACGATAGTCCAGAAG--------TTTACTTCCCTCC------CCAACACAATTTATTCCCacatagttttgaaaagtctaaattcttctttcgttC-ATCTCCAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1780725 351 +  4147112 TTATTTAC---TTGTCGCC-----------TTTTCTCTTTGTCTTCTCTGTTCTGGTCCCAAACAGGAGGATGGTGTTGTCTGACGAGAATTCCTTTTCCTTTC----TGATGACG-------CATCATCC-TTCCTACTTGACGC-------CTTTCACT---ccaatcggttttt------ttttattttagagTTTGTGGATGATTCCGT--GATTCCAGAA---TTCAATAATGTGGCTGCCGAAATGTATGTTTACGCG--------TTTTC------CTC---------GTCGTGTAGATGTATGTATGAGCGTGT---------ATGTGTACTC--ATGATAGTCCAAAAG--------TTTACCCCTTTTCTCCACACCAACACAAT---TCTCCAcatagtttcgaaatgtctcaat-----ttttgttcaaccACCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  278451 324 +   823664 ----ttactCGTTCTCCCcacttgtttattttttatgttcGGTTCATCTTCTCTTCCTCC----------------TCGTCCAACGACACTTCC---AGGCTCCGGGATGATGACGCATCC--CGTGGTCCGCCTCCCCCTAACATATACATACGTTTGCCCCCCGAATCGGTGCcctcttttttctgttttagaGATT-TGGATGAGTCCGT--GATTTCAGAA---TTCAATAATGTCGCTGCCGAAATGTATGTTTACGCT--------TGTCTATGTGTTTA---------AGTGTGTGAGCGTATT----TATGTGC---------ACCCTAGCCT----CACTGCAACGAAG--------TATATACCC-----------------------CACAGACCTAGTTTAAAAACGC----------------------------
i caeJap4.Scaffold18194 I 1194 I 433

a score=22707.000000
s ce10.chrX             3357134  97 + 17718866 -------------ACCATCATACGCACCAA----CACTGCTTTTGTTTCTTCATTCC---TTCGTTTCCCTTTCTCGTCCCTTTTTTTTCATATTTTCGCAGCATGAAT---------TTTCGGAC
s cb4.chrX              8443353  93 + 21540570 AAAACC-------ACCACCA--------GA----CCATA--tttgtttcgtttttcctagtttattttttgtttc------tctttc------cACCGACAGCATGCATTTCTAGGCCTTTTGCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   501147  95 -  4500979 --AACT-------ACCACCATGCACACTAA----CCCTGcttttgtttcttacttcc---ttcgtttcttatttt------cttttttactagCACAGCCAGCATGAAT---------TTTTGTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   614801  99 - 33334924 --GATTTCCTACAACCACCATGTACACCAATGGCCACTGcttttgtttcgtttttct---ttcgtttccttttct---atttctttt----------gccagcatgcat---------ttttAGAC
i caeSp111.Scaffold629  C 0 I 4186
s caePb3.Scfld02_0      1781076 100 +  4147112 --AACT-------ACCACCATGTACACCAA----CACTGCTTTTGTTTCTTCCTTCC---TTCGTTTCCTATTTTTGCGTTTCTTTC-ACCGGCTCAGCCAGCATGAAT---------TTTAAGGC
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194  278775 433 +   823664 I

a score=1764.000000
s ce10.chrX             3357231 26 + 17718866 G---TGTTACATTTTGGGCACGTTTATTT------------------------
s cb4.chrX              8443446 25 + 21540570 ----CGCTATGTCTTGGTTCCGTTTTCTT------------------------
i cb4.chrX              C 0 I 594
s caeRem4.Crem_Contig0   501242 25 -  4500979 ----CGCCATGTCTTGGCTATGTATGTCT------------------------
i caeRem4.Crem_Contig0  C 0 I 440
s caePb3.Scfld02_0      1781177 53 +  4147112 GTGTCGCTATGTCTTGACAACGTTTacgtttctgttttctctttttgtgaatt
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194  278775 433 +   823664 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I

a score=282.000000
s ce10.chrX             3357257  98 + 17718866 CCACCACCTAGTTGCGA------AAAATGTAGTGGGCCATA-AAAAACATTTGCTGTGTTTTC----TAGGAAAAATAGATTACACACATCCTGGATCAAAGAAGCAAA
s caePb3.Scfld02_0      1781230 108 +  4147112 tttcagactggttATGAGAAGCTAAAAATTAGCGAGGCATAGGGAGACGGAATCTTTGTTCTCGGTATAAGCAACCTATATT-TATGTATCTggtatgaaaaacaaaaa
i caePb3.Scfld02_0      C 0 I 155
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I
e caeRem4.Crem_Contig0   501267 440 -  4500979 I

a score=0.000000
s ce10.chrX             3357355 215 + 17718866 GTATCACATATAAGATTTTTAGAAATGAAGTACTTAACGAATTAGTTACATTTGCCAAATAAATGGCACAAACTCCCTAAAAATGCTATACTAATTTTACATAACGGTGGACTGTTTTAAATTACCACAAATGACTCCAATACCCCAAATATATCAAGAGGTTTTTTTTGTATATATGACTAGTCTAAGTTGGTTGACCGTATTTTTTACTTTTT
e caePb3.Scfld02_0      1781338 155 +  4147112 I
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I
e caeRem4.Crem_Contig0   501267 440 -  4500979 I

a score=-1462.000000
s ce10.chrX             3357570 479 + 17718866 GTACCAAATTTTTTAAG-ACTTTTTCACAATTTCTTTGTGGACGATTTGGGGTCACTTGGAGTATTTTAAAACTGAATCCACACAAGGAGGCAATTGTACTCTCAACTT---ACGCTTTAACCACGACTGATTTTTAGTTTCGAGGTTA---TCTTAAACTTCAGGTCTTGGCACGAAGatattaaataaattaaaaataattCAACAGTTTCAGGATGGGATTTATTTTGCTTTTAAAAAGTAAAAGTAGCTAGCTAAAATGGCTAGATTACGGTTTACTTTAATATACTGCTGTGTTAAATGAAATTTATATTTTCTTGCTTAAAAGCCTTGAGACAGAAGCATAATCGGAGGAAACAAAACTTTAAGTTTGAAAAGTGTTAGACATTTTATCGAATACTGTTGAACT-TTTTAATTTTTGGAACATTATTTATTTA-TAGAAAA-------CCTTCAATTTCATTATAATTCTGAACATTTTCTATTTCTGG
s caePb3.Scfld02_0      1781493 415 +  4147112 atgcaaaattttcaaaacactgtttttctattttttttagaagggTTTTAACT-ATATATAGGACTCCAAAGTTGGAACGTCTC-------CTATTATTTTCCCTCTTCTTGATGCTTT---CATAACCCGTAGTAAAATACAAAGCTAATGTAATAATCTGTGACTCCTGACCCCAG---------------AAAACTAACAcaaca---------------------tgttttcagaaatcaattaTTATTCCGTAAGCCACACAGATTGTATCTGACTTCCAGTT--TTCCtcgtt--------ttcccatttt-----taaaaagtgtt--gTCAACAACAT----------TTCTAACCTTTAAGTCAGCAAAACCTCAGTTAATTT------TAGTCTTCACTTATTTCAGTCTACCCAAGATTAGCAACatagtaaaaaaagaagagtctTGCacgtcatcatcgtcatcatcttTTCTTACTTCTCG
i caePb3.Scfld02_0      I 155 I 219
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I
e caeRem4.Crem_Contig0   501267 440 -  4500979 I

a score=0.000000
s ce10.chrX             3358049 102 + 17718866 TAAACGTCATTGCATTTTGATCATTACCATAAATTCCAAACTAAAGTATGCACATCATCGTTACAACATTCTCAATCGTGTACTCTCAACTTTTGCAGAAAC
e caePb3.Scfld02_0      1781908 219 +  4147112 I
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I
e caeRem4.Crem_Contig0   501267 440 -  4500979 I

a score=691.000000
s ce10.chrX             3358151 22 + 17718866 GCTAATTTTAGTCCGCA-CTCTT----------
s caeRem4.Crem_Contig0   501707 33 -  4500979 GTTAATTTTAGTCTGCATCTCTTTGTCGTCTAC
i caeRem4.Crem_Contig0  I 440 C 0
e caePb3.Scfld02_0      1781908 219 +  4147112 I
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I
e caeSp111.Scaffold629   614900 4186 - 33334924 I

a score=6421.000000
s ce10.chrX             3358173 126 + 17718866 CCCAGATTAGCAAC-----AAGAAAATAGTCGTCTCTGTTCAATGATCGTAATCGTCAT-----TTTTTTTTCCAGTTTCCGATCAAAATTCTAACTTCAA----CTACAAC----TATTA--TAAGATTTTCTCCTTTTTGTGTA
s caeRem4.Crem_Contig0   501740 146 -  4500979 CCGAGATTAGCAACAtagcaagaaaaatgagcGTTGCGcgtcatcatcgtcatcagcATCacttttttagtattttttctCGATCGAATTTACAACTACAATCTCCTATAACTACGtgttaaaaatgaagttcttcGTACttttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   619086 124 - 33334924 CCAAGATTAGCAACATAGTaaaaaaaGAGTGTCTCGtacgtcatcatcatcatc----------tttttccttcaCGTCTCGATCAAATTTACAACTACAATTTCTTACAAC-----ATCAActataaatttttaagtt-------
i caeSp111.Scaffold629  I 4186 I 3
e caePb3.Scfld02_0      1781908 219 +  4147112 I
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I

a score=-10807.000000
s ce10.chrX             3358299  88 + 17718866 GTATTCTCGTTTTTTAAAAATTGA---------AATTGA-----AATAGTCTTA----------------------------GATACTTACTTCCT--------TAAATGCACTCAACACTCAAAAAAGGTGTT--TTCA
s caeRem4.Crem_Contig0   501886 113 -  4500979 -agatttaatctttttaaaa-------------cattcc-----aattttcttt------cgttttttgtgtGTTCTCAAAAGACAATAATCTCCAAACGGAGACGGAAATCGTGAAAGTTCCAGAAGGCATTC--CTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   619213 140 - 33334924 TTGTCTGCCCTTTTTGGAAAGTTAAGCTCTTTTTAATCactcaaaatgtttttctcaattcattcTGTGAGCGTTCTATTGAAACGCTAATCTTTGAGCGGCGAGAAATTTAGGAGGAGTTCCCAGAAGAACTCGTTTCC
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1782127  74 +  4147112 GTTTTTACATCTTTTGAGAA-------------TAAT-------AATATTTATC------------------------TTAAAAC----------------TGATGAAAGTAGGTCagttttctagaaca------ttct
i caePb3.Scfld02_0      I 219 C 0
e caeJap4.Scaffold18194  278775 433 +   823664 I
e cb4.chrX              8443471 594 + 21540570 I

a score=-4851.000000
s ce10.chrX             3358387 35 + 17718866 CACTTTCAATAAGAAATAGGAAAAATAAGTTAGGC
s caeRem4.Crem_Contig0   501999 35 -  4500979 ACCTCttctgagaaaataaaagaaaaaagtcgaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   619353 26 - 33334924 ctttgaataaaaaggaTCGAAGAGtg---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1782201 17 +  4147112 caatgttctaagaaaat------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  279208 31 +   823664 CATTTTCTTGAAGACGTTGAGAAAAACAggc----
i caeJap4.Scaffold18194 I 433 C 0
e cb4.chrX              8443471 594 + 21540570 I

a score=32453.000000
s ce10.chrX             3358422 137 + 17718866 AAAAAAGAAGTC-------GACAAACTGCTTAATCAAGTTAAAAGTGTGGATTAAATCAACAGAAGAATGCG------------AATGCTGTGTCATTTAAAG---------------AAAAAAAAAC--GAAAGCTATTTTTTCCTCGCCGTTCTTTTTGTCCGACTTCTAA--
s cb4.chrX              8444065  98 + 21540570 aaaaaaattgtt-------gaaaaactcCTTAACCAAGTTAAAAGTGTGAATTAAATCAAC-------------------------------------TGctg---------------ggaaaaaatt--cgaa--------------ggcgttttttttcttatttttttga--
i cb4.chrX              I 594 I 59
s caeRem4.Crem_Contig0   502034 123 -  4500979 -agagaatagttg-----agaaaaaCTTCCTAATCAAGTTAAAAGTGTGGATTAAATCAACAGAAGAATGGA------------GT------------TGAGG---------------CTGAAAAATA--GGCAACTTCTCTGT-CTTGGtgttcttcctttttctttttt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   619379 120 - 33334924 aggaaaaaagttg------agaaaatTGTCTAATCAAGTTAAAAGTGTGGATTAAATTAACAGAAGAATGCA------------GA------------AACGG---------------GTGAGAAGtc--gccaatttttcaa----agacgttcttttttgctttttctg----
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0      1782218 125 +  4147112 aagaacaaaGTCGACAAGAAAAAACCTCCCTAATCCAGTTAAAAGTGTGGATAAAATCAAcagaagaatgtg------------aa------------aaaag---------------ctgaaaaaaaagagcaacttTT-------AGgcgttctctttttctgtttctt----
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194  279239 150 +   823664 ---ggaaaagttg------aaaaaacttTGTAATCAAGTTAAAAGTGTGCCTTGAATCAACAGAAGAATGCATGAAGCAAAGACGA------------AGAAGGAAGGATCGAGCTACGGGAAAGAAT--AGAAATGTCGttctttccttcgttctttctttctttttttc--gt
i caeJap4.Scaffold18194 C 0 C 0

a score=-12489.000000
s ce10.chrX             3358559 47 + 17718866 CTCGCCTAA-----CTTCTGCGT-----------------TACTGCTGTAAA-----TGCTAAT----AT------ACATAATT
s caeRem4.Crem_Contig0   502157 43 -  4500979 tttgattaa-----ctCTTTCTG---------------------CCTGTAAATTCTTT----ATCTAGAt------ata-----
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold629   619504 84 - 33334924 tccaaccagtgtttcttttttgaaatacgtaaatatgttaaaattcaatttattttttgatgattttgttcttttgatgttatt
i caeSp111.Scaffold629  I 5 I 34
s caePb3.Scfld02_0      1782348 57 +  4147112 TCCTCCTAA-----CTTTTCTGA-----------GTTTTGTTGCTCAATAAA-----TGCTAATCTTGAT------ACATAATT
i caePb3.Scfld02_0      I 5 I 31
s caeJap4.Scaffold18194  279389 50 +   823664 ttttttttc-----tttttttgt-----------------ttgcataGTGAA--TGTTGTTAATCTTCAC------ACTT----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8444163 59 + 21540570 I

a score=1662.000000
s ce10.chrX             3358606 7 + 17718866 ATTTGCT
s cb4.chrX              8444222 7 + 21540570 attttct
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig0   502219 7 -  4500979 agttttt
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold629   619622 7 - 33334924 aatctag
i caeSp111.Scaffold629  I 34 C 0
s caePb3.Scfld02_0      1782436 7 +  4147112 ACTTTCC
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold18194  279439 7 +   823664 AATTGTT
i caeJap4.Scaffold18194 C 0 I 812

a score=-64298.000000
s ce10.chrX             3358613 358 + 17718866  
s cb4.chrX              8444229 341 + 21540570  
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   502226 450 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   619629 410 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1782443 493 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  279446 812 +   823664 I

a score=13260.000000
s ce10.chrX             3358971 51 + 17718866 AGTTATAAACACA--TCAGC--CAAATTTTGGCATT--TCCCTCCAAAATTGTGGCT-----------
s caeRem4.Crem_Contig0   502676 65 -  4500979 AGTTATGAACACG-CCCAACCACAAACTTTTGctta--tttttcccatttttcggTGTCCCGGCGgtc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   620039 67 - 33334924 AGTTATGAACACGTCCCAACCACAAAGTTTtgcttc-tcttttcacattttttggtgTCCCGGCGGTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1782936 66 +  4147112 AGTTATGAACACG--CCAACCACAAagttttgcttctttttttcacatattttggtGTCCGGGCGGTc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  279446 812 +   823664 I
e cb4.chrX              8444570 42 + 21540570 I

a score=865.000000
s ce10.chrX             3359022 36 + 17718866 CAAAACTGCCGC----AGA--AAAAAGAAAAC---GAACGTG-TTT
s cb4.chrX              8444612 35 + 21540570 caaaacttaaga----aga--aaatttaacac----aatttt-ttc
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0   502741 41 -  4500979 caaaaaccaaaagatgata--gaagtaaaaaat--gaatgtg-ttT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   620106 39 - 33334924 CTCAaacattga----aga--aaaaagaaaaattggaatgcA-TTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1783002 42 +  4147112 cagaaacaaaga----aaagcagagcgaaaaaatggaatgtgtTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  279446 812 +   823664 I

a score=99175.000000
s ce10.chrX             3359058 102 + 17718866 CAGATATGTGGCTCGTCATTCTTTGTTTCGTCTTGCCGGCTATCATCTTTTTTGTTTTTGCATTAATTGCGTGGCTCCGAGTACTGCAGCTGAATTATAGGT
s cb4.chrX              8444647 102 + 21540570 cagatatgtGGTTGGTTATTCTGTGCTTTGTCCTCCCCGCTatcattttctcgatttttgcaCTGATCGCGTGGCTTCGGGTTCTACAATTGAATTACAGGT
i cb4.chrX              C 0 I 268
s caeRem4.Crem_Contig0   502782 102 -  4500979 CAGATATGTGGCTCGTGATTTTGTGTTTTGTCCTTCCGGCAAtcatcttctcaatttttgcacTCATCGCCTGGCTACGTGTGCTACAACTCAACTACAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   620145 102 - 33334924 CAGATATGTGGCTTGTTATCCTCTGTTTTGTCCTTCCGGCAATCATCTTCTCTATATTCGCACTGATCGCTTGGCTTCGTGTTTTACAGCTCAATTATAGGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1783044 102 +  4147112 CAGATATGTGGCTCGTCATCCTCTGTTTTGTTCTTCCGGCAatcatcttctccatttttgctTTGATTGCTTGGCTCCGCGTGCTACAGATCAATTATAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  280258 102 +   823664 CAGATATGTGGCTCGTCATCCTGTGCTTTGTCCTTCCGGCAGTTATCTTCTCAATTTTTGCACTGGTCGCGTGGCTGCGCGTGTTGCAGATCAATTATAGGT
i caeJap4.Scaffold18194 I 812 C 0

a score=-123.000000
s ce10.chrX             3359160 3 + 17718866 GAG
s caeRem4.Crem_Contig0   502884 1 -  4500979 -A-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   620247 3 - 33334924 AAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1783146 3 +  4147112 GAG
i caePb3.Scfld02_0      C 0 I 282
s caeJap4.Scaffold18194  280360 3 +   823664 GAG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8444749 268 + 21540570 I

a score=63.000000
s ce10.chrX             3359163 11 + 17718866 TTTTTTTCAAA
s caeRem4.Crem_Contig0   502885  8 -  4500979 ---CTTTTTTG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   620250 11 - 33334924 Aagctttcgaa
i caeSp111.Scaffold629  C 0 I 298
s caeJap4.Scaffold18194  280363  6 +   823664 -----TTCAAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1783149 282 +  4147112 I
e cb4.chrX              8444749 268 + 21540570 I

a score=616.000000
s ce10.chrX             3359174 5 + 17718866 TGAAG
s caeRem4.Crem_Contig0   502895 5 -  4500979 TATAG
i caeRem4.Crem_Contig0  I 2 C 0
s caeJap4.Scaffold18194  280369 5 +   823664 TGGAG
i caeJap4.Scaffold18194 C 0 I 89
e caePb3.Scfld02_0      1783149 282 +  4147112 I
e cb4.chrX              8444749 268 + 21540570 I
e caeSp111.Scaffold629   620261 298 - 33334924 I

a score=675.000000
s ce10.chrX             3359179 18 + 17718866 GGATAATAGTAGTGCCAT
s caeRem4.Crem_Contig0   502900 18 -  4500979 TGATAATATAGGTGTTAT
i caeRem4.Crem_Contig0  C 0 I 293
e caePb3.Scfld02_0      1783149 282 +  4147112 I
e caeJap4.Scaffold18194  280374 89 +   823664 I
e cb4.chrX              8444749 268 + 21540570 I
e caeSp111.Scaffold629   620261 298 - 33334924 I

a score=0.000000
s ce10.chrX             3359197 819 + 17718866  
e caePb3.Scfld02_0      1783149 282 +  4147112 I
e caeJap4.Scaffold18194  280374  89 +   823664 I
e cb4.chrX              8444749 268 + 21540570 I
e caeSp111.Scaffold629   620261 298 - 33334924 I
e caeRem4.Crem_Contig0   502918 293 -  4500979 I

a score=495.000000
s ce10.chrX             3360016 20 + 17718866 ACTGACAAACGACAAAACCA
s cb4.chrX              8445017 20 + 21540570 acggaaaaaataaatagcCA
i cb4.chrX              I 268 C 0
e caePb3.Scfld02_0      1783149 282 +  4147112 I
e caeJap4.Scaffold18194  280374 89 +   823664 I
e caeSp111.Scaffold629   620261 298 - 33334924 I
e caeRem4.Crem_Contig0   502918 293 -  4500979 I

a score=1986.000000
s ce10.chrX             3360036 12 + 17718866 ATGTTTGAACTC
s cb4.chrX              8445037 12 + 21540570 ATATAAGAACTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1783431 12 +  4147112 atatttgaactt
i caePb3.Scfld02_0      I 282 C 0
e caeJap4.Scaffold18194  280374 89 +   823664 I
e caeSp111.Scaffold629   620261 298 - 33334924 I
e caeRem4.Crem_Contig0   502918 293 -  4500979 I

a score=966.000000
s ce10.chrX             3360048 9 + 17718866 TTACACCTA
s cb4.chrX              8445049 8 + 21540570 -TTACCCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   503211 9 -  4500979 tttcaccta
i caeRem4.Crem_Contig0  I 293 C 0
s caePb3.Scfld02_0      1783443 3 +  4147112 ------cta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  280374 89 +   823664 I
e caeSp111.Scaffold629   620261 298 - 33334924 I

a score=-3390.000000
s ce10.chrX             3360057  8 + 17718866 ATTTT---------GTG---
s cb4.chrX              8445057  5 + 21540570 TTTTT---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   503220  4 -  4500979 -tttt---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1783446 14 +  4147112 tttttgttttctat------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  280463  8 +   823664 ATTTT------------GCA
i caeJap4.Scaffold18194 I 89 C 0
e caeSp111.Scaffold629   620261 298 - 33334924 I

a score=165619.000000
s ce10.chrX             3360065 361 + 17718866 -------TTCCAGACGGCGACGTGCGACTGAAGCAGCTGACCGAGAAGCAAAAAAGAAGGCGTCACAACTAGAAAGTCTCATTACAAAGTTAG--------------TTTTCCC-----AAACGTACTT--------TAATAATGATTATTTGTTTCAGAAAAGATGGGAAAGTGATTTGCCACATACCTATACAGGTGGAAGACATTGAAACTGGGGCAATGTTTCTCTACAATTCAGATGAAAACTTGGCAATAATTGGAGAAGATGCAAAAATTCCGCTTGTAGAGCAGCAGCTTGTGTGAAATTGATACTCACAAATATTTGAAA------------------GTTACCCCT--ACCTTAATTCATATCA-------------------------TAATCATTAAATTCAAAACAACAAAAGATGTATGCCCATGT-------
s cb4.chrX              8445062 342 + 21540570 ----------CAGACGTCGGATGGCTGCAGAGGCTGCTGGTcgagaagcaaaaaagaaggCATCACAACTCGAAAGTCTCATTACGAAGTGAGC-----------AAAGTTTCT-----ATTTTTGC----------ATAaagcgaatttt--tttcaggaaggaTGGAAAAGTGATTTGTCACATTCCGATTCAAGTTGAAGACATTGAAACCGGGGCCATGTTCTTATACAATTCAGATGAGAATTTGGCAAATATTGATGAAGACGTCAAGGTTCCATTGGTCGAGCAACAAGTTGTATGAAG----AACTTTCGAATATTCGAaagatgtttttttctctcaaatcaCA---------------ATAT---------------------------------TTTGAATC------ACGAAAATAATACACAACT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   503224 359 -  4500979 ----------cagACGGCGACTGGCTGCAGAGGCTGCTGATCgagaagcaaaaaagaaagcaTCACAGCTTGAGAGTCTCATTACAAAGTaag--------------atttttt-----agttttgcaaAACTT---ATTAAACAAAGTATGCTTGCAGGAAAGATGGAAAAGTGATTTGTCATATTCCAATCCAAGTGGAGGACATTGAGACTGGGGCAATGTTTTTATATAATTCGGACGAAAATCTGGCGACGATTGGAGAAGACGCAAAAGTTCCTCTCGTTGAACAACAAGCTgtgtgaaa----aa----taattatttcaaa------tttctctttaAAATTACACGC---CTTGG-TTCATATCA-------------------------TCTCTATCAAGTTC------ACAAAATTTGTTTGCCGATTT-------
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold629   620559 346 - 33334924 -------ttccagaCGACGAATGGCTGCAGAGGCAGCTGATcgagaatcgaaaaagaaggcgTCTCAACTGGAAAGTCTAATTACCAAGTGAG--------------TTATTCG----GCTATTTTGTTCGCATGCCAGTcaatgaatttgtttttcaggaaaGACGGAAAAGTGATCTGTCACATTCCAATTCAAGTTGAGGATATTGAAACTGGAGCAATGTTTTTGTACAACTCAGATGAGAATCTTGCGATAATTGGTGAAGACGCAAAAGTTCCACTTGTCGAACAGCAAGCAGTGTGAAG----------TCATCAGTCTAAT------------------ACTTCACAT--GCTTCATTTCATATCA-------------------------------TCACATTC------ACAAAACCATTTTTGTAAA---------
i caeSp111.Scaffold629  I 298 I 18
s caePb3.Scfld02_0      1783460 345 +  4147112 -------ttccagACGGCGAATGGCTGCAGAGGCAGCTGATcgagaagcaaaaaagaaggcGTCTCAATTGGAAAGCCTAATTACAAAgtaag--------------agttttgaaaaaagatttgcttCTATTAAGGGTTAATGATCCTG--TTTCAGGAAAGACGGAAAAGTGATTTGTCACATTCCAATCCGAGTCGAAGACATTGAGACTGGAGCCATGTTCCTCTACAATTCGGATGAGAATTTGGCTATCATTGGTGAAGATGTCAAGGTCCCACTTGTCGACCAACAAGCTGTGTGAA-----------CCATT--TCCAAC------------------ATAACACGT---CTTCA-TTCATATCA-------------------------------TCATGTTC------ACACAGTTCTTCTCTTTGCct-------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18194  280471 413 +   823664 TTCCAATTTTCAGACGACGAATTGCTGCGGAGGCAGCTGACCGAGAAGCTAAAAAGAAGGTGTCGCAACTTGAAAGTCTTATCACAAAGTAAGCCTAACTACTTTCACACTTTT-----ATAGTAGCTTTGTTTATCAATCAA----------TTTCAGAAAAGACGGCAAGGTAATTTGCCACATACCAATTCAAGTTGAAGACATTGAAACAGGAGCCATGTTCCTGTACAATTCGGACGAAAATCTAGCGACAATGGAGGAAGAAGCAAAAGAGCCACTTGTCGACTCGAATGTCGTGTGAAT----TGCA--TAAGCATTTCAAG--TATTTTGTTCC-----GTTCCACTTTTGCCTACTTTCATATCAACGCTCAAAACAATTACTGCTatctttttcatctttttc------aagagtttatttttttgaaaaagatgta
i caeJap4.Scaffold18194 C 0 C 0

a score=756.000000
s ce10.chrX             3360426 6 + 17718866 CTTGTT
s cb4.chrX              8445404 6 + 21540570 CTCGCT
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold629   620923 6 - 33334924 cttctt
i caeSp111.Scaffold629  I 18 I 14
s caePb3.Scfld02_0      1783814 5 +  4147112 -ttctt
i caePb3.Scfld02_0      I 9 I 14
s caeJap4.Scaffold18194  280884 1 +   823664 -----t
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   503583 31 -  4500979 I

a score=42528.000000
s ce10.chrX             3360432 51 + 17718866 TTTCAGTA-TTTC-TATTT----TGCATTCCCTGTGATCTCCAATTCTGGTATGAGT
s cb4.chrX              8445417 56 + 21540570 CGTCAGTA-TTCCATAATTTCAATGCATTCCCTGTGATCTCTAACTCTGGTATGAGC
i cb4.chrX              I 7 I 1
s caeRem4.Crem_Contig0   503614 52 -  4500979 tgtcagta-TTCCGTATTT----CGCATTCCCTGTGATCTCTCACTCTGGTATGAGC
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold629   620943 51 - 33334924 CATCAGTA-TTCCTTATTT----CGCATTCCCTGTGATCTCTCACTCTGGTATGAG-
i caeSp111.Scaffold629  I 14 C 0
s caePb3.Scfld02_0      1783833 52 +  4147112 CGTCAGTA-TTCCGTATTC----CGCATTCCCTGTGATCTCTCACTCTGGTATGAGT
i caePb3.Scfld02_0      I 14 I 82
s caeJap4.Scaffold18194  280885 52 +   823664 tttaagtattttcataatt----t-CATTCCCTGTGATCTCAAACGCTGGTACTTGC
i caeJap4.Scaffold18194 C 0 C 0

a score=-12525.000000
s ce10.chrX             3360483 49 + 17718866 ------------------GGCGCCCTCACAATGAACTTAATTGC-----ATTATACGTTTTTTTCTATCGAA
s cb4.chrX              8445474 47 + 21540570 ------------------TCCAATCCCATCCAAAACctaaaaactgtaaatttatTA-------TCACAGAA
i cb4.chrX              I 1 I 44
s caeRem4.Crem_Contig0   503666 19 -  4500979 -----------------------------------TCTCGaaac-----gtttttc-------------gaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   620994 33 - 33334924 ----------------------------------CTCCCAAAAC-----ATCTTTAATGCTTCCTCATTAAA
i caeSp111.Scaffold629  C 0 I 16
s caeJap4.Scaffold18194  280937 67 +   823664 AGCAACCGATTTTTCTTATTCAAATCCCTTTGATTACTCCATGC-----TTGTTACGTTTTTGtcaatcgaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1783885 82 +  4147112 I

a score=-3396.000000
s ce10.chrX             3360532 20 + 17718866 ---------GGTATTGTTCAATTTCTAAT
s caeRem4.Crem_Contig0   503685 10 -  4500979 ---------aacacttttc----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   621043 12 - 33334924 ---------TGTATTTGTAAG--------
i caeSp111.Scaffold629  I 16 I 27
s caeJap4.Scaffold18194  281004 20 +   823664 tcgaatcgttttgtttttaa---------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1783885 82 +  4147112 I
e cb4.chrX              8445521 44 + 21540570 I

a score=-3381.000000
s ce10.chrX             3360552 21 + 17718866 TCTAAAGAGAGTATGGTCTGT
s caeRem4.Crem_Contig0   503695  3 -  4500979 ----------------cct--
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   621082 21 - 33334924 tatgaaaaaaacatgttcaAG
i caeSp111.Scaffold629  I 27 I 7
s caePb3.Scfld02_0      1783967 21 +  4147112 TCTTAAAAGTTTTTGGTctct
i caePb3.Scfld02_0      I 82 I 5
s caeJap4.Scaffold18194  281024 10 +   823664 -----------tataaTTTGC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8445521 44 + 21540570 I

a score=56098.000000
s ce10.chrX             3360573 330 + 17718866 ----AATTAAAATTTGTTTCATGCAATCAATCCTTTTAAGACTTGTAAAACATTGGTCTCGTATCATTTTCTAAATATTGCTTTTTCATTTTTCTTCCCTTCGAAATTT----TTTATAATAATCTTGATGTTACTTCTTT---TTTTTGTAGC------ATTTTTTTGATAAAACAGTATGATCAATAAAT-----TTTCAATTTTCAATAGTGAATTTTGTTTTGCCACAAAGTGATTGCCCATCCAGGAAGATTGACCCACTCAGGACACCAACCTGCCATCGAATGGTACCCGGCTAGGCTGAGCAGTCCTCGGAGTTGTCTCATATTGGTTGGGATTCGGCCTGAAA
s cb4.chrX              8445565 232 + 21540570 ----AATTAAACTGTATGT--------------------------------------------TCAACTCTC-------------ATAATATTTGTATTTCCAGACATG--------TAATCATATT-----------TTT---ATAAGataa-----------------------aatataa------------tattttta--attagTGATTGATTTTGTTCTGCCACAAGGTGAGAGCCCAACCAGGAAGATTGATCCATACTGGACACCAACTAGCCATAGTTTGGTGACCAGCCAGCATGAGGAGTCCACGAAGGCATCGCATGTTGGTAGGAATAcgacctggaa
i cb4.chrX              I 44 I 47
s caeRem4.Crem_Contig0   503699 318 -  4500979 ----atttaaatttttttttgat------agcatataaaaaaacctgaa--atggagtttttctcaactttctctTGGTTATTCTGTATTAATTCTGCCTGTGAAAACG----TTCATAATTAATTC-----------TTC---ATTTCgtaattcattcattttgttGG--TAACAACATAATAAATTGAT-CTTATTTCTATTGTTAATgattaattttgttttgcCATAGAGTGAGTGCCCAACCAGGAAGGTTCACCCAGACCGGACACCAACTAGCCATTGTTTGGTAGCCAGCCAACATAAGAAGTCCTCGAAGGGATCGCATATTAGTCGGAACACGTCctgaa-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   621110 280 - 33334924 ----ATTTTGGTCTCTCGTCGA-----------------------------------TTTCCATGAACTTTC----------tgagaaataattttgcttttaatt-----------taaatattttg---------cttt---ttgatgTATCTTGTGAATTCAAtccgaataaaaatttaattaattaaCACGTTTTTTCAGCATTaatgatttattttattttgccACAAAGTGAGAGCCCATCCAGGAAGGTTTACCCAAACAGGACACCAAGAGGCCATCGTTTGATACCCAGCAAGCATAAGAAGTCCTCGAAGAGATCGCATGTTCGTCGGAACTCGTCCTGGAA
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1783993 274 +  4147112 ----atttcaatttccccCTGA-----------------------------------GTTTTATAATTTCTG----------CTTGTAAC-ATTTCTCCGCTAACT-----------TAAA----TTG---------ATTTACATGActgtaattttt--attgaaaacgatTACAAAATAaatc--taaatatttttcatggaagttaatgattaattttgttttgccAAAGTGTAAGTGCCCACCCAGGAAGGTTGACCCAAACTGGACACCAGCTTGCCATTGTTTGGTAGCCTGCAAGCATAAGGAGTCCTCGAAGAGATCGCATGTTGGTCGGAACTCGTCCTGCAA
i caePb3.Scfld02_0      I 5 I 2730
s caeJap4.Scaffold18194  281034 308 +   823664 ACCGACTTGTCTTCCTCATCACATGTTCTTTCCTTTCCA------------------TTTCTATCGTTGTTC---TGTTCATTTATAAAATACTTTTTCAATAAAGCTGAAACATAACAATAAAAGTg---------gtat---ttaataaaa-------atttaaattttaaacatGTATGTACAGTCAAT----GCAATTATATTTAATGACTAATTTTGTTCTGCCACAAAGTGAGAGCCCATCCGGGAAGGTTTAACCACGATGGAAACCAACTTGCCATGGTTTCGTGCCTGCTGATCTGAAGAAGCCCGCGGAGAGATCGTAGGTTGGTTGGAACTCGTcctgaaa
i caeJap4.Scaffold18194 C 0 I 750

a score=-23275.000000
s ce10.chrX             3360903 163 + 17718866 ACTTATAAGATGTACATTGCCGGCTAATATTCTATTGGCTTTCGGATGCTTAAGTTGTTCAAAAATTGTAACTCAAATGCTGTGATAGCTATCAAAAAAAATTCT----------------------------------------ACTAACACAGTTTGTTATGTTGTCATAATCAGTTAACTCGATTCCGGGAAGAGTTTTA
s cb4.chrX              8445844 191 + 21540570 GTTTAAGAGAAGGATGTGG------AAAATCTAATAAAATCGc-----acaatatttttcagtaaaagtCTATCggagatttcaatttttgtatcaaA-TATCATAGGTGTCGCTACCGGCTGTGCAGTACAAAGGAAGTTATGTAatattttgacctattttcattggaaaattgTAATATTAAAGtgctgaaaaagtttta
i cb4.chrX              I 47 I 259
s caeRem4.Crem_Contig0   504017  42 -  4500979 ------------------------------------------------atgacatttttccgt----------------------tttttg------------------------------------------------------actaatttaATTTACTATTCT-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   621390  77 - 33334924 -------------------------------------------------TGACATTTTCTGgctaatttaattttcaagactccgtttctgtaaaaaattatcttttg-------------------------------------TCGAAAGTGACTCAGTTC----------------------------------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1784267 2730 +  4147112 I
e caeJap4.Scaffold18194  281342 750 +   823664 I

a score=-12588.000000
s ce10.chrX             3361066 209 + 17718866 GCAGCTGACATCCAGAGGGTCTGTTTTGGACTA-GAATTAGTAAGCGATCCACAACTTTGAAGCTAGGCGTTC---ATGAAACAAAGTTCCTTTTTCGGACTAAAACACCAAATTACCTTTTTAAATGTTTAAAAAAAATTGACTAAAGAAATAGGTTTTGTTACAAATCTTCCTACGCATATTTGCGATTCTAGTAAACTTTTTAGATCGTT---
s caeRem4.Crem_Contig0   504059  98 -  4500979 -----TGAGTTCTTGAGGGAC-------------AAATGAGTCAG------ATGTCTTTAAAGGGAAAACTTCTAAATGAAGTCAGA--------------------ACCAAG--------------GGTCA------------------------TCATGTTTCAACA---------------------------------TTTGGATGATT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   621467  69 - 33334924 -----------GTTGCaaaac-----aaaactaaaaacgggt---------atatcgacgaaggg-----------ttgaaataaaa--------------------atca-----------------------------------------------------caaaa--------------------------------------ataactgtt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1784267 2730 +  4147112 I
e caeJap4.Scaffold18194  281342 750 +   823664 I
e cb4.chrX              8446035 259 + 21540570 I

a score=-1149.000000
s ce10.chrX             3361275 4 + 17718866 TTTT-
s cb4.chrX              8446294 4 + 21540570 TTCC-
i cb4.chrX              I 259 C 0
s caeRem4.Crem_Contig0   504157 2 -  4500979 --TC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   621536 4 - 33334924 -ttca
i caeSp111.Scaffold629  C 0 I 2
e caePb3.Scfld02_0      1784267 2730 +  4147112 I
e caeJap4.Scaffold18194  281342 750 +   823664 I

a score=-429.000000
s ce10.chrX             3361279 4 + 17718866 AAAT
s cb4.chrX              8446298 4 + 21540570 AACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   504159 2 -  4500979 A--T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   621542 4 - 33334924 attt
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1786997 4 +  4147112 aaCT
i caePb3.Scfld02_0      I 2730 C 0
e caeJap4.Scaffold18194  281342 750 +   823664 I

a score=407928.000000
s ce10.chrX             3361283 618 + 17718866  
s cb4.chrX              8446302 562 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   504161 601 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   621546 607 - 33334924  
i caeSp111.Scaffold629  C 0 I 27
s caePb3.Scfld02_0      1787001 614 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  282092 666 +   823664  
i caeJap4.Scaffold18194 I 750 C 0

a score=-17506.000000
s ce10.chrX             3361901 61 + 17718866 -------------------------ttatatttaa-aaaatttaCAAACCATGAAAAAATTAATTAATAAAAGAAACCAATGACAAC
s cb4.chrX              8446865 29 + 21540570 --------------------------CTCATATTA-ATGATT--------------------------ATATCACGCCAC-----AC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   504767 34 -  4500979 -------------------------TTTAGTTTTA-ATAATTTGGAGA--------------------ATAGAAAAACAA-------
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      1787615 33 +  4147112 -----------------------------GAATTACCTGATGTGTTGA--------------------ACAGAAATTAGA-----AT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  282758 67 +   823664 aaaaaactaaaaggtgtaaacagactttcaggtaa-aaaaaaagaaaaaaaagagaaaa---------aaagaaaac----------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   622153 27 - 33334924 I

a score=237481.000000
s ce10.chrX             3361962 383 + 17718866 TTACAGTCACTGCGGAAAATGCATTGTTCACTAGAATATCCAATTGGTTATCGGTTTCACTTGCAACTTCATCGAAGAATTTTTCCACTTCATCCATATTACTGTGGTCGACATATCGAACATGACAAATTCCACCACGTTTCCTACATTCTTCAGCGGTCCCCTCCAATGTTGGAAGATAGGTTAGCTCCGAAGAAAGAGTTTTAGATGGTGCACGTCCAGTAATGTACAAGGTACATCCAGCTTCCGCAAGTTGAAGAGCAACTCCTGTTAA--------A----TTGGC-----------TCATTATAAC---AAGATGATACCTTTCA---ACATACCTCTTCCACATCCTCTCGAAGCTCCGGTAACGATGGCGATTTTACTTTTAAGAGACAT----------GCCTAATAAAAGA
s cb4.chrX              8446894 396 + 21540570 TTACTGTGACTGCCGAGAATGCGTTATTCACTAAAATATCCAACTGATTGTCTGTCTTTCGTGCaactttattgaaaaactCTTCCACCGCTGCCATATCACTGTGATCTATATAATGAGGATAGCAAGTTCCACCACGTTTTCTGCATTCTACAGCTGTGTCTTCCAGTGTTGGTAGATAGGTTAGTTGGGATGATAAACTCTCTTCTGGGCACCGAGCGGTTATGAATAATGTGCACCCCGCTTCGGCGAGTTGTAGTGCAATACCTT--AA--------AACGTTTcagttggaaaaaaatagttagTAA---AAAA----------GT---ACAAACCTCTACCACAACCGCGAGACGCTCCAGTGACAATTGCAACTTTACCTTTCAGGGACATTATGAAAATATTCGTTCCAATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   504801 384 -  4500979 -TACCGTTACAGCAGAAAATGCGTTATTCACAAGAATATCCAGCTGATTGTTTGTAAATCTTGCGACTTCCTCAAAAAACTCTTCAACTTCAGTCATGTTGCTGTGGTCGATGTAGTGAGGATAACAAATACCACCGCGTTTTCTACATTCCTCAGCAGTAGATTCAAGAGTTGGAAGATACGTGAACTGGGAAGAGAGACTTTTTTCCGGAGAACGTGCAGTTATGAACGAGGTACATCCGGCTTCTGCCAACTGCAGAGCGATTCCTG--AA--------A----TTTAG------AATACGagttataaa---aaaaataacttattgC---ACATACCTCTGCCACAACCTCTTGACGCTCCGGTAACAATTGCAACTTTTCCGTTCAGAGACAT----------TTCTTACGAATG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   622180 382 - 33334924 TTACCGTAACAGCAGAGAACGCGTTGTTTACAAGGATATCTAACTGATTATCAGTTACTCTGGCAACTTCTTCAAAGAACTCCTCAACTTCTGTCATATTACTGTGATCGACATAATGTGGATAACACTTCCCGCCACGTTTCCTACACTCTTCTGCAGTTTCTTCAAGAGTTGGGAGATAAGTCAGTTGGGAAGAAAGACTTTTTTCTGGTAACCGAGCTGTGATGAACAACGTACATCCTGCCTCAGCTAGTTGCAAAGCGATTCCTG--GA-----AGTa----tttga------agttgaaaatagaaaagggaaa----------ac---acGTACCTCTACCACATCCTCTCGAAGCACCAGTAACAATTGCAGTCTTACcgttcaaaaacat----------ttcaaatgaatga
i caeSp111.Scaffold629  I 27 C 0
s caePb3.Scfld02_0      1787650 387 +  4147112 TTACGGTCACTGCAGAAAATGCGTTGTTCACCAGAATGTCTAGCTGATTGTTTGTAATTTTTGCAACTTCTTCAAAGAATTCTTCTACTTGAACCATGTTACTATGGTCTACATAACGTGGATAACATACTCCTCCACGGTTTCTACATTCTTCCGCTGTATCCTCGAGTGTTGGAAGATAAGTCAGTTGTGAAGAAAGACTCTCATCCGGACACCGTGCAGTTATAAACAGTGTACATCCAGCTTCAGCAAGTTGCAGTGCAATGCCTG--AATTCATCATA----TTTGC------AACAACaactttcaa---gaaa----------acttgACGTACCTCTACCACAACCTCTCGAAGCGCCTGTCACAATTGCAACCTTGCCGTTCAATGACAT----------TTCTGATGAATAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  282825 383 +   823664 aaaccgTAACCGCCGAAAACGCATTGTTCACGAGAATATCTAACTGATTGTCCGTAATTTGTGCAACTTTCTCAAAAAACTGCTCTACTTCAGCCATATCACTATGATTAACATAGAAATGATAGCATTTTGCACCACGTTTTTTACATTCTTCCGCCGTATCCTCAAGAGTTGGCAGATATTTCAATTGTGATGATAAACTCTCTTCTGGTTTTCTGGCAGTGATAAATAAAGTGCACCCAGCCTCAGCAAGTTGTAGAGCGATTCCTG--AA-TTGAAAGG----TTAAA------AGGAAGCAAAGTTAT---AAAG----------GT---ACATACCTCTTCCACATCCTCTAGAAGCTCCAGTAACAATGGCAACTTTTCCTGATAAAGACAT----------TGTTAGAAAGAAA
i caeJap4.Scaffold18194 C 0 I 30

a score=-5032.000000
s ce10.chrX             3362345 23 + 17718866 CGATTA--------TTTATGTCTCCACCCTA
s cb4.chrX              8447290 18 + 21540570 -CATTA--------TTCTCCA----AGTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505185 21 -  4500979 --ATTT--------TTCATCAGCACGGTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   622562 21 - 33334924 -gaat---------ttCATCTGAACTGTTCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1788037 30 +  4147112 -GAACAAATGGATGTTTATTCTCACATCTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  283208 30 +   823664 I

a score=17144.000000
s ce10.chrX             3362368  79 + 17718866 TTCCTTTTAAACTA--CTTT-----GTTTTTGCTCTTTGT------------TGCCATTTTTCTC---AAAAGGGCAACATTTTT------TTGTCAATTTTGATTG
s cb4.chrX              8447308  82 + 21540570 CTCCTTTTATACTA--TATC-----ATCTTTTTTGTCATCAGACAGTCTACATTTCACTTTTCTT-------GTGCATAGATTTT------TCG-----TCTGATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505206  87 -  4500979 TCTTTTATATGTTA--TACc-----accatttttctgattacaTTGTCTAGGTGTCACATTTCTCT--CAAAGtgcaacaatttt------tta-----tttgattg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   622583  86 - 33334924 TATATATTGTAACAATTTTC-----GTTATATTTCTCTAT---TTGTCTaggtttcatttttcgtc--taaagtgcaacattttt------tca-----tttgattg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1788067  84 +  4147112 TCTCTTTTATATCA--CACc-----gtcaaatttttctgt---tcgtCTAGGTTTCACTTTTCCTT--GAAAGTGcagacatttt------tca-----tttgattg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  283238 101 +   823664 TCTCTTTTATATTG--CATCTCGGAATCGGAATTCTTTTG----ACCACAAATCTCAGTTTCCCTCTACAAAGTGCAACATTTTTGATTGATTGTcagttttgtttg
i caeJap4.Scaffold18194 I 30 I 402

a score=20321.000000
s ce10.chrX             3362447 93 + 17718866 ATGTATAAGT--GTTGTTTGGTGTAAACTGTCTGTCTGAAAGATTTAATCAAACGCGTTCACTGGTGAAAAACATTTAAAAGTGCAGAAACTTCT
s cb4.chrX              8447390 86 + 21540570 ATGTCTAGTCTTGTTGTTTGTCATATGTTTGTTGACGGTGTCTTTGATTAGAACCGTTTGGATAGA---------TAAAAAGTGCAAGAACTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505293 86 -  4500979 atGTCTAGTTTAGTGGTTTGATATGTCCTTACTGTCGGCGTCTTTTCATTAGACAgtttacagtga---------caaaaaggGCAAAAACTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   622669 85 - 33334924 atGCCTGATTTTGTTGTTTGGTGTGATCTTACTGTCGGCGTCTTTTGATAAAAACTGTTTCGTAGA----------CAAAAGTGCAAGTTCTTCT
i caeSp111.Scaffold629  C 0 I 387
s caePb3.Scfld02_0      1788151 85 +  4147112 atGTCTAATTTTGTCTTTTGGTGTGACTTTACAGTCGGCGCCACTTGATAAAAACAGTTTAGCAGA----------AGGAAGGGCAAGAAGTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  283339 402 +   823664 I

a score=4742.000000
s ce10.chrX             3362540 12 + 17718866 CCAAAGTGCAAG
s cb4.chrX              8447476 12 + 21540570 CGAAAGTGCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505379 12 -  4500979 TGAAAGTGCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1788236 12 +  4147112 GGAAAGTGCAAG
i caePb3.Scfld02_0      C 0 I 179
e caeJap4.Scaffold18194  283339 402 +   823664 I
e caeSp111.Scaffold629   622754 387 - 33334924 I

a score=-831.000000
s ce10.chrX             3362552 1 + 17718866 T-
s cb4.chrX              8447488 1 + 21540570 T-
i cb4.chrX              C 0 I 501
s caeRem4.Crem_Contig0   505391 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1788248 179 +  4147112 I
e caeJap4.Scaffold18194  283339 402 +   823664 I
e caeSp111.Scaffold629   622754 387 - 33334924 I

a score=434.000000
s ce10.chrX             3362553 53 + 17718866 GCTGGCCCTCTAATCATGGTTTTTATTTCGGAAAAA----AAAGAAAAAAAAACGAT
s caeRem4.Crem_Contig0   505393 57 -  4500979 GTCGTCTAGAGGAAGATGTTGTTTATCAAGAAAAGGttttaaagataaaaaatTGGT
i caeRem4.Crem_Contig0  C 0 I 352
e caePb3.Scfld02_0      1788248 179 +  4147112 I
e caeJap4.Scaffold18194  283339 402 +   823664 I
e cb4.chrX              8447489 501 + 21540570 I
e caeSp111.Scaffold629   622754 387 - 33334924 I

a score=0.000000
s ce10.chrX             3362606 3889 + 17718866  
e caePb3.Scfld02_0      1788248  179 +  4147112 I
e caeJap4.Scaffold18194  283339  402 +   823664 I
e cb4.chrX              8447489  501 + 21540570 I
e caeSp111.Scaffold629   622754  387 - 33334924 I
e caeRem4.Crem_Contig0   505450  352 -  4500979 I

a score=1528.000000
s ce10.chrX             3366495 110 + 17718866 GAAAGTTACGCTAAGCTACTTAAACTTTTTCAGTGTCAAGTCTTCAATGTTGTTTCGAATTTTATTTTTAT-TTTGACCTTACTAAAACATCACGACTGTTTC-AAAAACAA
s caePb3.Scfld02_0      1788427 103 +  4147112 gaaagttATGCTAA-----TCAAAAGttatcacagaaaaattgtaaaaactgcttcaaa----atttttgcatgCGGTCATATTGAACCTTCacgcttttttttggaaccaa
i caePb3.Scfld02_0      I 179 C 0
e caeJap4.Scaffold18194  283339 402 +   823664 I
e cb4.chrX              8447489 501 + 21540570 I
e caeSp111.Scaffold629   622754 387 - 33334924 I
e caeRem4.Crem_Contig0   505450 352 -  4500979 I

a score=-1154.000000
s ce10.chrX             3366605 206 + 17718866 TTATAGAACCTTCAA--AACAAACAAAACAAATAT----------------------------------ACGCCCGAAAAGTGCACGTTTCAAATTTGACGACTTCAA-AAATCAAGTCAACTTTTACAAAATGAATTACCGCGTACTGTAAA---AAAATTTTATAATTGGTCGGACCCGAATTTTCAACGAAACAAAAAAAAC-------CGAACTACCCTCGAAATACAAATCAGAT----CTAATCG--TGCGAA
s cb4.chrX              8447990 186 + 21540570 ttatacaatttttcaacaaaaaaaaaattggaatt-----------------------------------tatcCGGAAAGTACAATCATACAATTTGATGGA------GAATTAAAACAATTCccg----------------attctgaaaatacaaaatctaataattgatc-------aattttca-------aattaaaatccGTACACAAACC--ATTTCAAACTCACatcacttatcaaaaaatgcattaaaa
i cb4.chrX              I 501 C 0
s caePb3.Scfld02_0      1788530 209 +  4147112 tTGTGGATATTTTTA--AATCCATAgattgaaactgatttttttcgatacatccatttcaaaataacaaataTTCGAAAAGTACAAAC-TTCAATTTGATGGACATAATAactttgaactatttt-------------------tccagaaaa---aaaaacaaataattgacc-------aattttca-------tatttaaac-------caaatttaattttaaatttccagtattt----cgaaccgattttgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  283339 402 +   823664 I
e caeSp111.Scaffold629   622754 387 - 33334924 I
e caeRem4.Crem_Contig0   505450 352 -  4500979 I

a score=-644.000000
s ce10.chrX             3366811 21 + 17718866 CTC--AGAAAAACCT--TTTCGCAT-
s cb4.chrX              8448176 25 + 21540570 tttggaaaaaaagatagTTCTGTAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505802 22 -  4500979 CTT--aaaaaaaCGTA-TTCCGAGA-
i caeRem4.Crem_Contig0  I 352 C 0
s caePb3.Scfld02_0      1788739 23 +  4147112 ctc--aaaaaatagca-tttttaAAG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194  283339 402 +   823664 I
e caeSp111.Scaffold629   622754 387 - 33334924 I

a score=18565.000000
s ce10.chrX             3366832 51 + 17718866 ATAAATCAGTTCTTTGGGAACCAATGTACATTGC---AAAAAATGAAGACTCGT
s cb4.chrX              8448201 51 + 21540570 ATaaatcagaaactttgaaacc--caaataatgcaaaaaaatgggTGGGCT-GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505824 52 -  4500979 Ataaatccaaattttcgaaacctatacataatgc-aaaaaatgtaTGGACT-GC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   623141 52 - 33334924 ataaaTCAGTTAGATTGGAACCGATACATAATGC-AGAAAAAGTGTGGACT-GC
i caeSp111.Scaffold629  I 387 C 0
s caePb3.Scfld02_0      1788763 51 +  4147112 ATAAATCAGTCATATTGGAACCGATACataatgc-a-aaaaaatgtggaCT-GC
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194  283339 402 +   823664 I

a score=183340.000000
s ce10.chrX             3366883 330 + 17718866 GCATCCGAATGCA-------ATAATTGACGTACGAGATAGTAGTGGATGCGGCGGGTAACTCAGGGAGTCAGAC-GAAAAACCGGAAACGAA-TC-GCATATGACTG------GAGATTTCGGCCCAATGGGCGAACAGTTTGTTCCA-------ATTTCTTTTTCGCACTGATCTTTTGTTAGACTCTA---------CCGCCGATGGTTCAATTTTCACAAATCCGTTTCAATTATTAGGA--TCGACTGAGTCA--GTGAATCAGGTTTAGTGA----GCGACAAA-------GAATCATAACAAATGTTGTCGCT---GGTAATCTCCTAT-TGTCGGTTACATGATGAGTATGTCTATTTATGAGCCGA-CATGGTT
s cb4.chrX              8448252 333 + 21540570 GCATCCACATGAA-------ATAATTGACGTGCGAGATAGTGCTGGATTTGATGGACAACTCGGGATGTGAAAC-GAAAAACCGGAAACGAACCT-GTGTGTGACTA------AAGATTTCGGTCCATTCCAGGAGGAGTTTCGTTTGGCCATATA----TATTTTGCACTGATCTCTTGTTAGACTCCGGGCGTCCCCCCA--AAGAGAGGAA-TTTCACAAATCCGCTTCAATCATTAG-------------TCAGGTTGAATCGGGTTTTTTGGGGTTGAGCGGAA-------AGAGAATAACAAATGTTGTCGCT---GGTAATCTCCTAT-TTTCGATGTCATTATGAT--GGTTTCTGTGCGAGCtga-catagtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   505876 320 -  4500979 GCATCCACATGTA-------ATAATTGACGTGCGAGATAGTGCTGGATGAGGTGGATGACTCGGGATGC-AAAC-GAATAACCGGAAACGAA-CT-GCCTGTGACTG------GAGATTTCGACCCATT---GGAGGAGTTTGTTCCG-------A----ATTTTTGTACTGATCTTTTGTTAGACTCCG---------CCG--GAGGgttcaatttttacaaatccGTTTCAATCATTAGGA--TGAACTGACTCA--CTGAATCAGGTTTAGTGAG--CGcgacaaa-------gaaaaataacaaatgtTGTCGCG---GGTAATCTCCTAT-TTTCGATGACATTATGAG--GGTCTGTGTGCGAGCTTG-tatggtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   623193 319 - 33334924 GCATCGGAATGTA-------ATAATTGAAGTGCGAGATAGTGGTGAATTCGATGGATGACTCGGGATGG-AGAG-TAAAAACCGGAAACAAA-CT-ACGTGTGACTG------GAGATTTCGGTCCATC--GGGAAGAGTTTGTTCCA-------A----AGTTTTGCACTGATCTCTTGTTAGACTCGC---------CC----CTCATCTGTTCCTCCCCAATCCGTTTCAATCATTAGGA--TGAACTGACTCA--CTGAATCAGGTTTAGTGAG--CGCGACAAA-------GAATAATAACAAATGTTGTCGCG---GGTAATCGCCTAT-TTTCGATGACATTATGAA--GGTCTCTACACGAGCTGA-CAtggtt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1788814 318 +  4147112 GCATCGAAATGTA-------ATAATTGAGGTGCGAGATAGTGATGGATTTGGTGGATGACTCGGGATGC-AGAG-TAAAAACCGGAAACGAA-CC-GCGTGCGATTG------AGGATCTCGGTCC-TT--TAAAATAGTTCGTTCCG-------A----ATTTTTGCACTGATCTTTTGTTAGACTCGG---------CCG--GGTGGTTCAATTTTTACAAATCCGTTTCAATCATTAGGA--TGAACTGACTCA--CTGAATCAGGTTTAGTGA----GCGGCAAA-------GAATAATAACAAATGTTGTCGCG---GGTAATCTCCTAT-TTTCGATGACATTATGAT--GGTCTCCGTGCGAGTTGA-CATGGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  283741 343 +   823664 GCATCCGAAAAAATTCATCCATAATTGGTGGACGAGATAGTGCTGGATTTTGTAAGCGAGTCAGGGCGACAGAGTGAAAAACCGGAAATGAA-CTAGCGTGGGGGTGCTGACTGAGATTTCGGTCCGCGATGAAGATCCTCTGTTCCGA------A----AGTTCAGCCCTGATTTTTTGCTGAACTTAA-------TTCCG--ACAGATTTG--TCCAATAAATA-----CCATCATTGACAACTAACCTGACTCATTGTGGTTCAGATT---------GGAAACAAAACGAATTGAATCACAGTGAATGTTGTCGCTGGCGGTAATCGTTTGTATTTTGATGACATTTTTTC--GTTCAGT-TGCGAGCCGACCATGGTT
i caeJap4.Scaffold18194 I 402 n 402

a score=17315.000000
s ce10.chrX             3367213 28 + 17718866 TTTTTT-----CCATCACCAAACATTCGTTTCA
s cb4.chrX              8448585 33 + 21540570 ttttttttccaccatCATCAAAcattcatttca
i cb4.chrX              C 0 I 1656
s caeRem4.Crem_Contig0   506196 28 -  4500979 tttttt-----ccatcATCAAACATTCATTCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   623512 25 - 33334924 tttt--------catcatcaaacattcatttca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1789132 28 +  4147112 TTTTCA-----CCATCATCAAAcattcattcca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  284084 402 +   823664 I

a score=8878.000000
s ce10.chrX             3367241 60 + 17718866 ----TTTCCCTTCGAGTATTCATT-----------TTCCAGTTCGGTTTTTTGTCGGTTTGATAATTCTTTAAAA
s caeRem4.Crem_Contig0   506224 57 -  4500979 ----TCGGCCTCGATGAAATTATTATTCGTCATTATTTCACATCGGTTtcattttgatcaa--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   623537 75 - 33334924 tttgtcCCCCACGATGAATTTAATATTCGTCATTATTTCACTTTGGTTTCAAACCGATCAAATATTCCTTTATAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1789160 74 +  4147112 ttc-tttttcatgATGAATTTAATATTCGTCATTATTTTACTTTGATCTCATTCCGTTTAAATATTCCTTTATAA
i caePb3.Scfld02_0      C 0 I 905
e caeJap4.Scaffold18194  284084 402 +   823664 I
e cb4.chrX              8448618 1656 + 21540570 I

a score=-790.000000
s ce10.chrX             3367301 5 + 17718866 GTATT---
s caeRem4.Crem_Contig0   506281 5 -  4500979 ---ttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   623612 5 - 33334924 GAACT---
i caeSp111.Scaffold629  C 0 I 622
e caePb3.Scfld02_0      1789234 905 +  4147112 I
e caeJap4.Scaffold18194  284084 402 +   823664 I
e cb4.chrX              8448618 1656 + 21540570 I

a score=1569.000000
s ce10.chrX             3367306 166 + 17718866 GGTCAGACGCGGATAACAGAG-ATCTACATTCTGTCACTTTTCAAAAATGCAGTTGTGTTCCTTTTTGTGGAA--AATGGAAAATACATCCATT----ATAGAGACCACTCTTTTTTAC--ATAGCTTGTGCCTTTA-GGGTCCCCAGACGTCTTCGAAAATTATTTTCTCCGAAA
s caeRem4.Crem_Contig0   506286 166 -  4500979 cgt----CGCTTATAAGAATGCATTTATA-TCCGTCATTTTCCAAATAT----CTAAACTGCTCGAAGCGGAACTCTCAGAAAACAGGTCcattaaaaacagaaacaccTTGTTTTTGCTAGTTTCTTGTTCCGTGACGGGTCCCTAGACAACGTC-AACATCGTTTccttggaaa
i caeRem4.Crem_Contig0  C 0 I 487
e caePb3.Scfld02_0      1789234 905 +  4147112 I
e caeJap4.Scaffold18194  284084 402 +   823664 I
e cb4.chrX              8448618 1656 + 21540570 I
e caeSp111.Scaffold629   623617 622 - 33334924 I

a score=0.000000
s ce10.chrX             3367472 1142 + 17718866  
e caePb3.Scfld02_0      1789234  905 +  4147112 I
e caeJap4.Scaffold18194  284084  402 +   823664 I
e cb4.chrX              8448618 1656 + 21540570 I
e caeSp111.Scaffold629   623617  622 - 33334924 I
e caeRem4.Crem_Contig0   506452  487 -  4500979 I

a score=1226.000000
s ce10.chrX             3368614 30 + 17718866 ATTATAGTCTCTCTTTTTACACACAATAAA
s caeSp111.Scaffold629   624239 30 - 33334924 aTAATagtctcctttttttcaattcacaaa
i caeSp111.Scaffold629  I 622 C 0
e caePb3.Scfld02_0      1789234 905 +  4147112 I
e caeJap4.Scaffold18194  284084 402 +   823664 I
e cb4.chrX              8448618 1656 + 21540570 I
e caeRem4.Crem_Contig0   506452 487 -  4500979 I

a score=311.000000
s ce10.chrX             3368644 2 + 17718866 AT
s cb4.chrX              8450274 2 + 21540570 ac
i cb4.chrX              I 1656 C 0
s caePb3.Scfld02_0      1790139 2 +  4147112 aC
i caePb3.Scfld02_0      I 905 C 0
e caeJap4.Scaffold18194  284084 402 +   823664 I
e caeSp111.Scaffold629   624269 0 - 33334924 C
e caeRem4.Crem_Contig0   506452 487 -  4500979 I

a score=1562.000000
s ce10.chrX             3368646 10 + 17718866 AAAATCACCA
s cb4.chrX              8450276  8 + 21540570 aaaatcac--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   506939  8 -  4500979 aaaatcac--
i caeRem4.Crem_Contig0  I 487 C 0
s caeSp111.Scaffold629   624269  6 - 33334924 --atttga--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1790141  8 +  4147112 AGAATCAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  284084 402 +   823664 I

a score=239226.000000
s ce10.chrX             3368656 688 + 17718866  
s cb4.chrX              8450284 752 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   506947 708 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   624275 725 - 33334924  
i caeSp111.Scaffold629  C 0 I 13
s caePb3.Scfld02_0      1790149 733 +  4147112  
i caePb3.Scfld02_0      C 0 I 56
s caeJap4.Scaffold18194  557406 710 -   823664  
i caeJap4.Scaffold18194 I 19695 C 0

a score=-15284.000000
s ce10.chrX             3369344 47 + 17718866 --------------------------------ACACTAATAACAGTTGGCTGAGTTGAGAGTTAATTGTTCAAATTGTT-------------------------------
s cb4.chrX              8451042 27 + 21540570 --------------------------------aaactttgTTATGTTATCT--------GGTTACTA-------------------------------------------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   507655 40 -  4500979 --------------------------------aattttttctgtgttttct-------cAATTACTAGTTCACACTGTT-------------------------------
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold629   625013 37 - 33334924 --------------------------------ATATCCTGTCCcgctattt----------ttaaaagttgaGCGGGGC-------------------------------
i caeSp111.Scaffold629  I 13 I 7
s caeJap4.Scaffold18194  558116 99 -   823664 CCAAAACATCCTAAAggaatttaaaaacaataaaactgttttccttttttc-----------tactGGATGGTCGGGGTAaatgaaacggaaaaaagtgcaaaattcGAG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1790882 56 +  4147112 I

a score=365992.000000
s ce10.chrX             3369391 599 + 17718866  
s cb4.chrX              8451069 589 + 21540570  
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0   507715 582 -  4500979  
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold629   625057 555 - 33334924  
i caeSp111.Scaffold629  I 7 C 0
s caePb3.Scfld02_0      1790938 567 +  4147112  
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold18194  558215 598 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=174.000000
s ce10.chrX             3369990 2 + 17718866 GT
s caeRem4.Crem_Contig0   508297 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   625612 1 - 33334924 -T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1791505 1 +  4147112 -a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  558813 2 -   823664 GT
i caeJap4.Scaffold18194 C 0 I 11
e cb4.chrX              8451658 32 + 21540570 I

a score=-453.000000
s ce10.chrX             3369992 4 + 17718866 TCTA-
s caeRem4.Crem_Contig0   508299 4 -  4500979 TTCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   625613 4 - 33334924 TTTA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1791506 5 +  4147112 tttca
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold18194  558815 11 -   823664 I
e cb4.chrX              8451658 32 + 21540570 I

a score=-924.000000
s ce10.chrX             3369996 34 + 17718866 tcaggttgtcccataagttttt-gtactatttttt
s caeRem4.Crem_Contig0   508303 30 -  4500979 -----TTTAGCTCAAAGAATtcaatataattattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   625617 28 - 33334924 -----TTATGCTGTTGTTGTTT--TAAAACTTGTT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1791511 26 +  4147112 I
e caeJap4.Scaffold18194  558815 11 -   823664 I
e cb4.chrX              8451658 32 + 21540570 I

a score=182.000000
s ce10.chrX             3370030 2 + 17718866 tt
s caeSp111.Scaffold629   625645 2 - 33334924 TT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1791511 26 +  4147112 I
e caeJap4.Scaffold18194  558815 11 -   823664 I
e cb4.chrX              8451658 32 + 21540570 I
e caeRem4.Crem_Contig0   508333 0 -  4500979 C

a score=0.000000
s ce10.chrX             3370032 1209 + 17718866  
e caePb3.Scfld02_0      1791511   26 +  4147112 I
e caeJap4.Scaffold18194  558815   11 -   823664 I
e cb4.chrX              8451658   32 + 21540570 I
e caeSp111.Scaffold629   625647    0 - 33334924 C
e caeRem4.Crem_Contig0   508333    0 -  4500979 C

a score=95.000000
s ce10.chrX             3371241 18 + 17718866 GAAGTTTTGAAACCGTTG------
s caeJap4.Scaffold18194  558826 24 -   823664 GGAGATTTGTAACAATTATTAGTT
i caeJap4.Scaffold18194 I 11 C 0
e caePb3.Scfld02_0      1791511 26 +  4147112 I
e cb4.chrX              8451658 32 + 21540570 I
e caeSp111.Scaffold629   625647  0 - 33334924 C
e caeRem4.Crem_Contig0   508333  0 -  4500979 C

a score=273.000000
s ce10.chrX             3371259 1 + 17718866 A
s caePb3.Scfld02_0      1791537 1 +  4147112 a
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold18194  558850 1 -   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8451658 32 + 21540570 I
e caeSp111.Scaffold629   625647 0 - 33334924 C
e caeRem4.Crem_Contig0   508333 0 -  4500979 C

a score=-1107.000000
s ce10.chrX             3371260 1 + 17718866 -A
s cb4.chrX              8451690 1 + 21540570 -a
i cb4.chrX              I 32 C 0
s caePb3.Scfld02_0      1791538 1 +  4147112 -a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  558851 1 -   823664 T-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   625647 0 - 33334924 C
e caeRem4.Crem_Contig0   508333 0 -  4500979 C

a score=2501.000000
s ce10.chrX             3371261 5 + 17718866 TATTC
s cb4.chrX              8451691 5 + 21540570 tattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   508333 5 -  4500979 tattt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1791539 5 +  4147112 cattc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  558852 5 -   823664 TTTTC
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   625647 0 - 33334924 C

a score=101229.000000
s ce10.chrX             3371266 118 + 17718866 T-AGGTTAATGAAGTAGAACTTTTAAATGCTACAATCCGCCCAGAAATGTTTGAAGCTAACCATTCATTTGTTCAAAGGTGCAGTTTTACAAATGGAACACGAATCTATAATTGTAAGT
s cb4.chrX              8451696 119 + 21540570 taaggTTAATGAGGCGGAACTTTTGAATGCTACTATTCGCCCAGAGATGTTTGCCCCTAACCATTCATTTGTTCAGAGATGCAGTTTCACAAATGGAACCAGGATTTACAATTGTGAGT
i cb4.chrX              C 0 I 458
s caeRem4.Crem_Contig0   508338 118 -  4500979 t-gggTGAACGAGGCGGAATTACTGAATGCAACAATTCGTCCAGAGATGTTTGCTCCAAACCATTCTTTTGTTCAGAGATGCAGTTTCAATAATGGAACTCGTATTTACAATTGTAAGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   625647 118 - 33334924 -CAGGTAAACGAGGCTGAGTTATTGAACGCAACTATTCGTCCGGAAATGTTTGCTCCAAACCATTCTTTCGTCCAGAGATGTAGCTTCAAAAACGGAAGTCGTGTGTATAATTGTAAGT
i caeSp111.Scaffold629  C 0 I 10
s caePb3.Scfld02_0      1791544 117 +  4147112 --aggTGAACGAAGCCGAATTATTGAATGCTACTATTCGACCCGAAATGTTTGCACCGAATCATTCATTCGTGCAGAGATGTAGTTTTACAAATGGAACACGAATATATAATTGTGAGT
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194  558857 118 -   823664 -AAGGTCAATGAAGCAGAATTACTCAACGCGACTATTCGTCCGGAAATGTTTGCCCCAAACCACTCGTTTGTTCAAAGGTGTAGTTTTCCGAATGAGACGAGGATTTATAACTGTGAGT
i caeJap4.Scaffold18194 C 0 C 0

a score=-2846.000000
s ce10.chrX             3371384 13 + 17718866 ---TTACAAGTTA-TGC
s caeRem4.Crem_Contig0   508457 13 -  4500979 ---ATGAAAAACT-TGC
i caeRem4.Crem_Contig0  I 1 I 32
s caeSp111.Scaffold629   625775 13 - 33334924 ---ATTAAAACAG-CGC
i caeSp111.Scaffold629  I 10 I 47
s caePb3.Scfld02_0      1791673 14 +  4147112 ---GTTTAGTTTGTTAT
i caePb3.Scfld02_0      I 12 I 78
s caeJap4.Scaffold18194  558975 16 -   823664 TTGTTTGAAGCAA-CAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8451815 458 + 21540570 I

a score=203280.000000
s ce10.chrX             3371397 347 + 17718866 ------------------------AAAAAGTTCGGTGCCTCATGCTGGAATCGAACCAGCGACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGCATAAGAGAAACACTTTTCTCTCCGTAGAA---ATGCATGCCGCTAGCCAACTAACCGAACGACCGCCG---------AAAGG-TTAGGGAAACGAGAGGAAGTCA--------CATTGCAGGCCCCTACAATCATCTCTTCTCGCATACTTCCCTGTCTGACAAGAATATTGGATGGATTGTTTTGTTTGTCTCGATTTTCTGCCTCGTTATGTGTCTTGTGGGAATTGTATACTTAATTCAGGTAT-----------CCCAAAATTCATGAAAGTTTGAAAAAAAAACAAAAT
s cb4.chrX              8452273 335 + 21540570 ------------------------aaaaatttcggtGCCTCATGCTGGAATCGAACCAGCGACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGGACGAAAGAGAGAAG------GTTGTAGCGCAAACATATACA---AGACACG-GGAGC-----GCGCCGGGAGC----GAGAAaccagagaaacgagagaaaagG---------CATTGCAGGCCCTTACCACCACCTCTTTGCCTACACTTCTTTGTCGGACAAGAATATTGGATGGATTGttctttttatttcaattttctgctTGGTTATGTGTTTAGTAGGGATTGTTTACTTGATTCAGGTAA-----------TCT----TTAAagaaagtttttagaaaaaaat-aat
i cb4.chrX              I 458 C 0
s caeRem4.Crem_Contig0   508502 352 -  4500979 ------------------------aaaagtttcggtgCCTCATGctggaatcgaaccagcgACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGCATGACATAGC-----------CTGTAGTCTCTGCGTATACA--TAGGCA---GCAGCCGCCGCCGCCGTAAACTTGAAAGAGACCGGAGAGACAACAGAGAAAGAGTGAGAAAAACTTCAGGCCCATACAATCATCTATTTGCGAACACTTCTCTCTCGGACAAGAATATTGGATGGATTGTCTtgttcatttcaattttctgtttggTTATGTGCCTTGTCGGAATAGTTTATCTGATACAGGTAA-----ATATTGTAT----TAACGAAAAATCCATACAAGTaagt--at
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold629   625835 324 - 33334924 ------------------------aaaaagttcggTGCCTCATGCTGGAATCGAACCAGCGACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGGACGAATGA-------------GTGTAGTT---ATGTTTGCG--TAGAAGTGCGAAGCAGCCAGCGGCGCCGGT----AAGAG-Cgacagagaaacgagagaaa----------aactgCAGGCCCGTACAATCATCTCTTCGCAAACACTTCTCTGTCGGACAAGAATATCGGATGGAttgttttattcatttctatcTTCTGTTTGGTCATGTGTTTAGTTGGGATTGTGTACTTGATCCAGGTAA-----------TTC--------AAAGAATA-GAGGAATCATCT--GT
i caeSp111.Scaffold629  I 47 C 0
s caePb3.Scfld02_0      1791765 326 +  4147112 ------------------------aaaagtttcgGTGCCTCATGCTGGAATCGAACCAGCGACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGCATGTCTGC-------------CTATAGAG---ACGCCCGCG--TAGATATTCGTAGCAGCGGGCGCCGGTAGT----GAAAg-cgagagagaagagag---aa----------aacttCAGGCCCCTACCACCATCTCTTCGCAAACACTTCTCTTTCGGACAAGAATATTGGATGGATTGTTctctttatttcaattttttgtttggtcaTGTGTCTAGTTGGAATTGTTTATTTGATACAGGTAA-----------TAC----ATCaaaagaatattcaaaattaact--gt
i caePb3.Scfld02_0      I 78 C 0
s caeJap4.Scaffold18194  558991 353 -   823664 aaaaaaaaCCGAACtccatttccaaaaaatttcggtGCCTCATGCTGGAATCGAACCAGCGACCTTCTGTTTACTAGACAGACGCTCTGCCACTGAGCCAATGAGGCGGTTGGGAGT-------------GGGAAGAT----TGTTTAAA--TAGAGA---AAAGTGGCGCTAGTCGTAGTG----GAAaa---agagaaacgagagaaaaaaagta-----cACTGCAGGCCCATACAATCATTTCTTCGCGTACACTTCTCTCTCGGACAAGAGTATTGGATGGATTGTGTTGATCGTGTCTATTTTTTGCCTTGTCATGTGCCTTGTTGGTATTGTTTATCTTATACAGGTACTGAATATGTTGTGT----TGATGAAAAA---GTAAAAT---------
i caeJap4.Scaffold18194 C 0 I 763

a score=-3457.000000
s ce10.chrX             3371744  6 + 17718866 CT----CGTT
s cb4.chrX              8452608  6 + 21540570 cc----tGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   508854  6 -  4500979 tt----ttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   626159 10 - 33334924 ACATGTGTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1792091  5 +  4147112 at-----ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  559344 763 -   823664 I

a score=302342.000000
s ce10.chrX             3371750 362 + 17718866 TTCAGAAACTACTAGACGGGCATGCAGCAAATTACGTTCGAAACCTACTTTCAAAGCAATGCCCCGGAATGTGGAAGCCTTGTACTGGCTACCTCGTAATGCTAGTTGGACTTGTAGTCACCATATTGGTAGAACATCAAAACCCCATACTTAGAAAAAGGTACAC-ATTCTTTATTATTTAGATCCAATCAAACAGTATATTCTCGTCTTCACTGACTCCATTGGTCGGTAGCGGAGTTGTGACACTAGAACAGATGTACCCACTTGTCTTGGGAAGTAACATTGGAACTACGTTCAGTGGTGTTCTTGCTGCTTTCTCAACAGATCCGTCAAGATTTGAAAAGTACAGATAACGAAAAGAA---
s cb4.chrX              8452614 353 + 21540570 TTTAGAAGCTACTTGATGGTCATGCCGCCAACTACGTGCGAAACCTACTATCCAAAGAATGCCCGGGAATGTTCAAACCATGTACCGGTTACCTGGTCATGCTGGTCGGATTAGTCGTCACTATCCTGGTAGAACACCAACa-tccgattttaaaaaaaggtaaaa----ttccattttttagattcaatCGAACagcattttttcgtcttctctGACACCATTGGTCGGAAGCGGGGTTGTGTCCTTAGAACAAATGTATCCGTTGGTTTTGGGAAGTAATATTGGAACTACGTTCAGTGGAGTACTTGCTGCTTTCTCAACTGATCCTTCAAGATTTGAGAAGTACA---AACAC--TACA---
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   508860 360 -  4500979 ttcagaagttGCTGGACGGTCATGCTGCGAACTATGTGAGAAACCTACTTTCCAAGCAGTGTCCCGGAATGTGGAAACCGTGTACAGGCTACCTTGTGATGCTTGTGGGACTTGTCGTGACTATTCTGGTAGAACACCAACACCCCTATTTCAAGAAAAGGTACAATCATTCTCCTTTCTCAGATTCAATCAAACAGCATATTCTCGTCTTCTCTGACACCTTTGGTCGGAAGCGGTGTTGTGACATTAGAACAAATGTATCCATTGGTTCTGGGAAGTAATATTGGAACTACATTCAGTGGAGTACTTGCTGCTTTCTCAACTGATCCGTCACGATTTGAAAAGTaca---aacataaaaaa---
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold629   626169 353 - 33334924 TATAGAAACTTCTTGATGGACATGCAGCTAATTACGTACGAAATTTACTTTCAAAGCAATGCCCAGGAATGTGGAAACCGTGTACCGGATACTTGGTTATGCTTGTCGGTCTTGTGGTCACGATTCTGGTAGAGCATCTACATCCccatttgagaaaaaggtacat----ttatttttat-agatTCAATCAAACagtattttctcttcttcccttACACCTTTGGTTGGAAGTGGTGTTGTGACATTAGAACAGATGTATCCATTGGTTCTGGGTAGTAATATTGGAACTACATTCAGTGGTGTTCTTGCTGCTTTCTCAACAGATCCTTCAAGATTTGAGAAGTA-----Tacatgaaaaa---
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0      1792096 353 +  4147112 tacagaaacttCTTGATGGACATGCTGCTAACTATGTCAGAAACTTACTATCAAAACAATGCCCGGGAATGTGGAAACCGTGTACTGGATACTTGGTTATGCTAGTTGGACTTGTTGTTACTATTCTGGTAGAACATCAACATCCCCATTTAAGAAAAAGGT--at----taatttttctcagattcaaTCCAACAGTATATTCTCATCTTCTCTAACACCATTGGTTGGTAGCGGAGTTGTGACATTAGAACAGATGTACCCTCTGGTTCTGGGAAGTAATATTGGAACTACATTCAGTGGAGTACTTGCTGCTTTCTCAACAGATCCATCAAGATTTGAGAAGTAT----TGCCTgggaaa---
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  560107 355 -   823664 TTCAGAAACTTCTCGAAGGACATGCAGCAAACTACGTCAAAAGTCTCCTCTCAAAACAGTGCCCAGGAATGTGGAAACCTTGCACCGGATATCTCGTTATGCTCGTCGGACTAATAGTTACCATTCTGGTAGATCAGCAAAACGGAACGTTAAAGAAAAGGTAGAA----CCGTTTT----AGATTCAATCCAACAGCATATTCTCCTCCTCTCTGACTCCATTGGTCGGAAGTGGTGTTGTAACACTTGAGCAAATGTACCCGTTGGTGTTGGGCAGTAACATTGGAACTACATTCAGTGGAGTGCTCGCTGCCTTCTCAACAGATCCTTCTAGATTTGAGAAGTACT---AACAATCGCATGTT
i caeJap4.Scaffold18194 I 763 C 0

a score=-4278.000000
s ce10.chrX             3372112 19 + 17718866 TTGTGGGGGTTATTGGTGA
s cb4.chrX              8452971 19 + 21540570 ttatgaatttcatccaaaa
i cb4.chrX              I 4 I 3
s caeSp111.Scaffold629   626524 15 - 33334924 tagtcagaaa----aaata
i caeSp111.Scaffold629  I 2 I 2
s caePb3.Scfld02_0      1792451 17 +  4147112 ttatgaaatg--ttcaata
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold18194  560462 19 -   823664 GTACAGAGCAGATAAATAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   509220 19 -  4500979 I

a score=97306.000000
s ce10.chrX             3372131 188 + 17718866 A-----TTTTTCAGAGCGTTGCATATGGCAATGTGCCAAGTGATCTACAATATCATTGGAACGTGCTTGTTCTATATTGTACCATGTACAAGGAAGTTTCCAGTATATTTATCAGTAAAACTGGGGGTAATTACGGACCATGTAAGTT--TGGACTACAAATTCTATAAATTTTCTTTGACTGCTGTACGTACAG
s cb4.chrX              8452993 156 + 21540570 t-----cttttcagagCTCTTCATATGGCAATGTGTCAGGTTATCTACAATATCATTGGAACTTGCCTATTTTATATTGTGCCATGCACcagaaaatttccagtttaTCTTTCTATCAAGCTTGGTGACATCACGGACAAAGTAAG----TGAA------ACTCGATAAAG------------------------
i cb4.chrX              I 3 I 1
s caeRem4.Crem_Contig0   509239 159 -  4500979 A-----TTTTTTAGAGCGTTGCATATGGCTATGTGCCAAGTTATTTACAACATCATCGGAACCTGTTTGTTCTACATTGTGCCATGCACCAGAAAATTTCCTGTCTATCTTTCTATAAAACTGGGAGATattactgataaagtgagTTCCTGTT------ATTTG-TAGAG------------------------
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold629   626541 148 - 33334924 aatccctttttcagAGCTCTTCATATGGCAATGTGCCAAGTGATATATAATATAATTGGAACTTGTCTCTTTTATATTGTGCCTTGCACAAGAAAGTTTCCAGTCTATTTATCAATAAAGCTTGGTAATATCACCGACCAGGT-AG----TAG------------------------------------------
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1792470 145 +  4147112 a-----tgtttcagagCATTACATATGGCAATGTGTCAAGTAATTTACAACGTAATTGGAACTTGTTTGTTTTACATTGTGCCTTGCACAAGAAAGTTTCCAGTATATCTTTCCATAAAATTGGGTAACATAACTGATCAGGTGAG----TGGA-----------------------------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  560481 131 -   823664 ---TGTGATTTCAGAGCTCTTCATATGGCAATGTGCCAGGTAATTTACAATATCATTGGAACTTGCCTGTTTTACATTGTTCCATGCACCAGGAAATTTCCCGTTTATCTTTCTTTAAAACTTGGAGAAATCAC-------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-15072.000000
s ce10.chrX             3372319 79 + 17718866 AGCGTCATTCGAATAATAACCAGAGTTTTTGTAAATGAAGAAGTACTTAATTTTATAAAACACATTTTGAAATGAATAG
s cb4.chrX              8453150  7 + 21540570 ---------------------------------------------AGCAAGT---------------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   626689 23 - 33334924 ------------------------------------------TTccctaatt--------------ttcaaataaaaag
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1792615 21 +  4147112 -------------------------------------AAACAGTCCTCAACT--------------CTgaat-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  560612  8 -   823664 ---------------------------------------------------------------------AAATGAAG--
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   509398  0 -  4500979 C

a score=-1109.000000
s ce10.chrX             3372398 55 + 17718866 CCGGAGTCCTAGACAAAGTAGTTTTTTTTTTAATTCATTTAAGAAAAACTATACC
s caeJap4.Scaffold18194  560620 23 -   823664 --TTAGTTTTGCTCAAAGTTGTACC------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1792636  0 +  4147112 C
e cb4.chrX              8453157  0 + 21540570 C
e caeSp111.Scaffold629   626712  0 - 33334924 C
e caeRem4.Crem_Contig0   509398  0 -  4500979 C

a score=-504.000000
s ce10.chrX             3372453 11 + 17718866 TCTGGTATTTT
s cb4.chrX              8453157  5 + 21540570 -CTAAA-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1792636 11 +  4147112 tttggaacttt
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194  560643  0 -   823664 C
e caeSp111.Scaffold629   626712  0 - 33334924 C
e caeRem4.Crem_Contig0   509398  0 -  4500979 C

a score=0.000000
s ce10.chrX             3372464 3 + 17718866 TCA
e caePb3.Scfld02_0      1792647 3 +  4147112 I
e caeJap4.Scaffold18194  560643 0 -   823664 C
e cb4.chrX              8453162 0 + 21540570 C
e caeSp111.Scaffold629   626712 0 - 33334924 C
e caeRem4.Crem_Contig0   509398 0 -  4500979 C

a score=-1155.000000
s ce10.chrX             3372467 19 + 17718866 ATCATTGTGTATTATTTTA---
s cb4.chrX              8453162 13 + 21540570 ------GTGTCTCATTTCA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   509398  6 -  4500979 ----------------TCAAGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1792647  3 +  4147112 I
e caeJap4.Scaffold18194  560643  0 -   823664 C
e caeSp111.Scaffold629   626712  0 - 33334924 C

a score=-1911.000000
s ce10.chrX             3372486 77 + 17718866 CTTAAGTATTTCTTTATAATCTCCCAAATGTATTTATATGTATTTAATACTTACTAAGTACTTATTTATTGGCGGAA
s caeRem4.Crem_Contig0   509404 11 -  4500979 --------------------------------------TGAACGTAATA----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1792647  3 +  4147112 I
e caeJap4.Scaffold18194  560643  0 -   823664 C
e cb4.chrX              8453175  0 + 21540570 C
e caeSp111.Scaffold629   626712  0 - 33334924 C

a score=-417.000000
s ce10.chrX             3372563 26 + 17718866 AAGTTAATTTCTTGCTAGAAAATCAA
s caeJap4.Scaffold18194  560643  8 -   823664 AAGTTAAA------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1792647  3 +  4147112 I
e cb4.chrX              8453175  0 + 21540570 C
e caeSp111.Scaffold629   626712  0 - 33334924 C
e caeRem4.Crem_Contig0   509415  0 -  4500979 C

a score=-1309.000000
s ce10.chrX             3372589 9 + 17718866 TATGTAACT--
s caeRem4.Crem_Contig0   509415 1 -  4500979 --------T--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   626712 9 - 33334924 tatGTAATT--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  560651 9 -   823664 --TGGGGTTTC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1792647 3 +  4147112 I
e cb4.chrX              8453175 0 + 21540570 C

a score=274827.000000
s ce10.chrX             3372598 465 + 17718866  
s cb4.chrX              8453175 460 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   509416 461 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   626721 466 - 33334924  
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1792650 464 +  4147112  
i caePb3.Scfld02_0      I 3 I 25
s caeJap4.Scaffold18194  560660 532 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-4054.000000
s ce10.chrX             3373063 22 + 17718866 AACTCCTGCCGTTAACACTTTA--------
s cb4.chrX              8453635 13 + 21540570 ---------TCCACACAATTCA--------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   509886 15 -  4500979 -AA------TTCTTGCATTTAA--------
i caeRem4.Crem_Contig0  I 9 I 5
s caeSp111.Scaffold629   627190 22 - 33334924 gaagtcttcATTACACATTTCA--------
i caeSp111.Scaffold629  I 3 C 0
s caeJap4.Scaffold18194  561192 30 -   823664 AAACTATGTATTTCACACCCAGTCACTCTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1793114 25 +  4147112 I

a score=338124.000000
s ce10.chrX             3373085 699 + 17718866  
s cb4.chrX              8453651 688 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   509906 753 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   627212 734 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1793139 763 +  4147112  
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold18194  561222 797 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1913.000000
s ce10.chrX             3373784 3 + 17718866 AAA
s cb4.chrX              8454339 3 + 21540570 aaa
i cb4.chrX              C 0 I 39
s caeSp111.Scaffold629   627946 2 - 33334924 -AA
i caeSp111.Scaffold629  C 0 I 41
s caePb3.Scfld02_0      1793902 2 +  4147112 -AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  562019 3 -   823664 AAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   510659 0 -  4500979 C

a score=100.000000
s ce10.chrX             3373787 1 + 17718866 G
s caeJap4.Scaffold18194  562022 1 -   823664 G
i caeJap4.Scaffold18194 C 0 I 2053
e caePb3.Scfld02_0      1793904 0 +  4147112 C
e cb4.chrX              8454342 39 + 21540570 I
e caeSp111.Scaffold629   627948 41 - 33334924 I
e caeRem4.Crem_Contig0   510659 0 -  4500979 C

a score=-4665.000000
s ce10.chrX             3373788 221 + 17718866 CAAAACAGATACTGTTAAGTAGCATTAGAATGAAAGTCTGAAAGGCAGATTAGCGCTTGAAACAAATTGGAAATTTTGCCAAGTTTTAATAGCCTACTTGGGTAGAAAAATGTGTATGGTCAAATAAAACTTAAAAAAAAAACTTAAATTTGAAAAAAGAGCAATGTAATTTGAAACAGTAATTTTTGGTCACAACGGTTTATTTACGATCAGATAATATA
s caePb3.Scfld02_0      1793904  38 +  4147112 ---------------CAAGTTACACTCGAAT---------------------------------------------------------------------------------TATATAGTC-------------------------------------------------------------TTTCT--------------------------CTGATATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  562023 2053 -   823664 I
e cb4.chrX              8454342  39 + 21540570 I
e caeSp111.Scaffold629   627948  41 - 33334924 I
e caeRem4.Crem_Contig0   510659   0 -  4500979 C

a score=0.000000
s ce10.chrX             3374009 143 + 17718866 AAATCCTCAAGTACGCGTGGTGAGACCCGTGTGTCTAAATTATTATTTTTCGACGTCTACGTAATAGTAATGTTTTCAATATTATAAACACATACATATATTCAAACTTTGGTCGTTTTACGAGATGAGCGATACTCATGCCA
e caePb3.Scfld02_0      1793942   0 +  4147112 C
e caeJap4.Scaffold18194  562023 2053 -   823664 I
e cb4.chrX              8454342  39 + 21540570 I
e caeSp111.Scaffold629   627948  41 - 33334924 I
e caeRem4.Crem_Contig0   510659   0 -  4500979 C

a score=573.000000
s ce10.chrX             3374152 19 + 17718866 AAAATACGTAGTTTTCTTA
s caeRem4.Crem_Contig0   510659 19 -  4500979 AAAAAACTAATTGTTTTTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1793942  0 +  4147112 C
e caeJap4.Scaffold18194  562023 2053 -   823664 I
e cb4.chrX              8454342 39 + 21540570 I
e caeSp111.Scaffold629   627948 41 - 33334924 I

a score=-945.000000
s ce10.chrX             3374171 24 + 17718866 ACTTTTCCAATTTTCCCGCCAAAT----
s caeRem4.Crem_Contig0   510678 19 -  4500979 ATCTCGTCCACTT-----CCAAAT----
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold18194  564076 22 -   823664 -ACTTCTCTACTA-----CCCCATAAAC
i caeJap4.Scaffold18194 I 2053 C 0
e caePb3.Scfld02_0      1793942  0 +  4147112 C
e cb4.chrX              8454342 39 + 21540570 I
e caeSp111.Scaffold629   627948 41 - 33334924 I

a score=-1106.000000
s ce10.chrX             3374195 3 + 17718866 -ACT
s caeRem4.Crem_Contig0   510698 2 -  4500979 -AC-
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      1793942 3 +  4147112 -ATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564098 3 -   823664 TAT-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8454342 39 + 21540570 I
e caeSp111.Scaffold629   627948 41 - 33334924 I

a score=165520.000000
s ce10.chrX             3374198 170 + 17718866 TACTTTGTGTAGGTAAGTGTCGATACATGGATCTTTCCGAGTACATGTCGTATCCATCCATGAAATTGCGCAGCTGTTTGAACATGCTTGACAGACGGAAATTACAACTGCCATATTGTCGCGTAGTGATGCATTGACGCAGGACTCCGCGGTGCATTTGAAGATTGTCT
s cb4.chrX              8454381 170 + 21540570 TACTTTGAGTTGGCAAATGTCTGTACATGGAACGCTCGGAATACATATCATACCCATCCATGAAGTTGCGAAGCTGCTTGAACATACTCGACAGACGGAAATTGCAACTACCGTAATGCCGAGTGGTGATGCATTGGCGAAGGACACCGCGGTGCATGTGAAGACCGTCT
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   510700 170 -  4500979 TACTTTGTGTTGGTAGATGCCGATACATTGAGCGTTCAGAGTACATATCATATCCATCCATGAAGTTACGCAGCTGTTTGAACATACTGGACAACCGGAAATTGCAGCTTCCATAGTGTCGGGTGGTGATGCATTGACGGAGGACACCGCGGTGCATTTGAAGATTGTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   627989 170 - 33334924 TACTTTGTGTTGGCAAATGACGATACATTGACCTTTCCGAGTACATATCATATCCATCCATGAAGTTACGAAGTTGTTTGAACATGCTCGACAATCGGAAATTGCAATTCTCATATTTTCGGCTATTGATGCATTGACGAAGAACACCGCGGTGCATTTGAAGATGGTCT
i caeSp111.Scaffold629  I 41 C 0
s caePb3.Scfld02_0      1793945 170 +  4147112 TACTCTGTGTTGGAAGATGTCGATACATAGATTTCTCCGAATACATATCGTAACCATCCATGAAATTACGGAGCTGTTTGAACATGCTTGATAACCGGAAATTACATGTCTCATGCTTCCGAGCAGTGATGCATTGTCTAAGAACACCGCGGTGCATTTGAAGATGTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564101 170 -   823664 CACTTTGCGTTGGCAGATGCCTGTACATGGATCGTTCCGAATACATGTCATATCCGTCCATAAAGTTGCGTAGTTGTTTGAACATGCTCGACAAGCGAAAATTACAGCTCCCATAGTGTCGGGTAGTGATGCATTGTCGCAGAATTCCACGATGCATTTGAAGATTATCT
i caeJap4.Scaffold18194 C 0 I 50

a score=5888.000000
s ce10.chrX             3374368 55 + 17718866 A---AGAATTGATGAGATTTGCCGGGA-----------A-AATCTCAGTATCCTGTC----TATATTTTAGA-GC
s cb4.chrX              8454551 64 + 21540570 AAAGAAAATTAATGAggtttttgcaaa--aatcc---CA-AATCTGGGAGGAAAATC----TAAATGCGAAA-AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   510870 66 -  4500979 ----GAAATAAATGAGATTTCCGAAAAGCAGTGCATTCA-AATCTTGATGgctcatc----ttttttcaaaagag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   628159 67 - 33334924 ----GAAATTAATGAGATTTCCGGCGc--atttcattcagaatctTGATGCaaaatcttgatttttgCG-AA-TG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794115 67 +  4147112 ----GAAATTAATGAGATTTCCGGCGC--ATTGCATTCA-AATCTTGATTggaaatctagattttttggCAA-AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564271 50 -   823664 I

a score=77078.000000
s ce10.chrX             3374423 170 + 17718866 CTTACCCATTTGGTTGCGAGGTTGATGAATGGACCAATAGTCGGAGATCAACGCGATGACCAGCATTCCAGTGCCGACCAGAAGAAGTATCCATGATACCACCTAGAAAAT------------------------CAAATGTTCGA-------ATCAATTTTTTTTTAT----AAT---------TTA------ACATTACCAAATCTTAACTTTGAATT
s cb4.chrX              8454615 190 + 21540570 CCTACCCATTTGGTTGCGCGGTTGATGAATGGACCAGTAGTCGGAGACCAACGCGATGACCAACATTCCCGTTCCCACCAAGAGAAGTATCCATGATACTAcctaaaaaa--------------agtgggaataCCAAATGACAAAAGATCCCGtaatttcgatgtttt----------------ttaGAATACGAAATGCTCTATTAAACCTCTAcctt
i cb4.chrX              C 0 I 403
s caeRem4.Crem_Contig0   510936 127 -  4500979 caTACCCATTTGGTTGCGGGGCTGATGGATGGACCAGTAGTCGGAGACGAATGCAATAACCAACATTCCCGTTCCGACCAGAAGAAGTATCCATGATACGACCT-------------------------------------------------GTAACAT--ATGTTAT----------------CTG------GAAATG--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   628226 160 - 33334924 CATACCCATTTGGTTGCGGGGTTGATGGATGGACCAGTAGTCAGAAACCAATGCAATAACCAACATTCCAGTCCCGATTAGAAGCAGAATCCATGATACGAccttaaaaataattt-------------------gaattctcaaa-------ataaattctccatatc----aat---------cca------aaaatagtcaa---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794182 193 +  4147112 CCTACCCATTTGGTTGCGTGGTTGATGGATGGACCAGTAGTCGGAGACCAATGCAATAACCAACATTCCGGTCCCAACCAGAAGAAGGATCCATGATACGACCTAAAATAGGACTCAGCCTTTTAGTGGGAagtagaaaaattaaa-------atagcCTCTGTGTTCC----AACTGCTGAGAGTTT------GAATTGGTAAAAAAGA----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564321 150 -   823664 CGTACCCATTTGGTTGCGCGGTTGATGAATGGACCAATAGTCGGAAACAAACGAAATTAGCAGCATCCCCGTGCCAATGAGAAGTAGTATCCATGATACCACCTGGAatc-------------------------gaaaatataaa---------aatttgaatctaACAAGAAac---------ata------aaatt---------------------
i caeJap4.Scaffold18194 I 50 C 0

a score=-4803.000000
s ce10.chrX             3374593 30 + 17718866 GGCATTTTTTAAAGTTATTTATTAAAAATA
s caeRem4.Crem_Contig0   511063 13 -  4500979 GGCGGACCCCTGA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1794375  9 +  4147112 AGCGTTTCA---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564471 24 -   823664 ---gttttgttaaaaTAGCCAACTCGA---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8454805 403 + 21540570 I
e caeSp111.Scaffold629   628386  0 - 33334924 C

a score=28319.000000
s ce10.chrX             3374623 50 + 17718866 CAAACCTGTAGGCCGGTGAATTGCATAGCCATT-TTGAATTCCTCGTAATC-------------------------------
s cb4.chrX              8455208 47 + 21540570 CATACCTGGAGGCCTGTGAATTGCATAGCCATA-GTGAGATCCTTCTA----------------------------------
i cb4.chrX              I 403 C 0
s caeRem4.Crem_Contig0   511076 50 -  4500979 CAAACCTGAAGGCCGGTGAATTGCATAGCCATG-TTGAGATTGCAGTACTC-------------------------------
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold629   628386 47 - 33334924 ---acCTGAAGGCCAGTGAATTGCATAGCCATG-TTGAGATAGTAGTCTTC-------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794384 50 +  4147112 CTTACCTGGAGGCCTGTGAATTGAGTAGCCATA-TTGAGATAGTCGAACTC-------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564495 82 -   823664 CTCACCTGCAGGCCAGTGAATTGCATGGCCATGTTTGAGATTGCTTTTTCAGCTTTCTCAGCTCTTCCGCGGAAATATCCTC
i caeJap4.Scaffold18194 C 0 C 0

a score=-1323.000000
s ce10.chrX             3374673 13 + 17718866 AGACGAACTTCAT
s caeSp111.Scaffold629   628433 10 - 33334924 ---TCCGCTCGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794434  9 +  4147112 ---TCGGCTT-AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564577 13 -   823664 AATCTTATTCCAT
i caeJap4.Scaffold18194 C 0 I 28
e cb4.chrX              8455255  0 + 21540570 C
e caeRem4.Crem_Contig0   511126 21 -  4500979 I

a score=-590.000000
s ce10.chrX             3374686  7 + 17718866 ---GCGTAGT-
s cb4.chrX              8455255  8 + 21540570 ---GCGCATCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   628443 10 - 33334924 GAAGCGtctt-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794443 10 +  4147112 GAAGTacaat-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564590 28 -   823664 I
e caeRem4.Crem_Contig0   511126 21 -  4500979 I

a score=5322.000000
s ce10.chrX             3374693 36 + 17718866 -TTACGTATCCATTGCAAAGTGAACAAAACCCAA----CCT
s cb4.chrX              8455263 36 + 21540570 -TTATGATTCCATTTC-CAGTATG---AACCTGAGCTTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   511147 38 -  4500979 -TTATGACTCCATTGC-GAGAATA-ACAACCTAAGCACTCA
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold629   628453 40 - 33334924 ttcaagttttcatcGCAGAAAGTA-ATCACCTATATTCTCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794453 40 +  4147112 tttatgatttcattTCGGAGAGTA-ACCACCTAAGTTTCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564590 28 -   823664 I

a score=110765.000000
s ce10.chrX             3374729 278 + 17718866 AA--TATAAATTTATTCTATATCGGTA-----ACATCAAAGTACGAGAGATTAATGAT------ATTATTCAGAA-----A--------------AGAACAAGGTAGCGTAATTAAACT--------AAAAGAAGCAGA-AGTGCAGTGAATATAAAAGAA------------------------GGGGAGGATAAGGAGGAGCACGGAGAGT------GCG-AGTAGTTAACTAACAGCGATTCATAAATATGCATGGC------------AGT----------AAAGGCGGGCAGTGTTGTGGTCACTCAAAGATTTTGTTAGATTGACTTTTTGA---GCACGAG-TGCG--AAGAGGC----AAGGGAATT------GGAATTG----
s cb4.chrX              8455299 328 + 21540570 CACTTATGAATCAACTCCAATTAGACGAAAGTGCAAGAAA---------------------tcctttcttttcaaaacgGACAAATGAAATGGATTTAACAAGGTAGCGTAATTAGACtccagaagaaaagaaggcggGGAGAAAGGGCGGCAC-GATGAAAAGAGA---------------TGGGAATaagaggaggaggagcaaAAAGAGCAGTACGAGG-AGCAGTTAACTAACCGCGATTCATAAATATGCATAGCAAGGAAGTGTGAAGA-A-------GAGTGA-GGGCAGTGTTGTGGTCACTC---GATTTTGTTAGATTGACTTTTTGAG--GAAGCAC-AACACTGAGAAGTAGTAAGGGGAAAT-------Gaaatg----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   511185 295 -  4500979 GAGATATGAATTAGATTTAATTAGAAG-GAGTGCAAAAAC---TGGGAGCAGAAGATTTCTTTGCTTCTTTAGAAAACGGA--------------TGAACAAGGTATCGTAATTAGACC--------aagaaaggcggagaggacaagaggcgg-gaagaa------------------------gaaaaaggggaggaggagcaaagagagT------ACG-AGCAGTTAACTAACAGCGATTCATAAATATGCATAGC------------AGT-A-------GAGCAAGGGGCAGTGTTGTGGTCACTCGAAGATTTTGTTAGATTGACTTTTTGA---GCAGAAT-TGCTTCGAGTACT----AAGGgaatt-------gaaatg----
i caeRem4.Crem_Contig0  C 0 I 82
s caeSp111.Scaffold629   628493 283 - 33334924 AA--TATGAATTTGGTTTGATtagata-------aaaaaagaatgaaaggaATAGGAA---CGTATTCTATTGAA--ACGA--------------TGAACAAGGTGGCGTAATTAGACC-------AAGAAAATGCGGAGAAGGCAGTAGGCGgcgatgaa-------------------------aaagaaaagaggaggagcaaAAAGAGT------ACGAAGCAGTTAACTAACAGCGATTCATAAATATGCATAGC------------AGTCA-------GGACGAAGGGCAGTGTTGTGGTCACTCGAAGATTTTGTTAGATTGACTTTTTGA---GCACGAG-AGCC--GACTACT----AAGGgaatt-------gaa-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794493 288 +  4147112 AA--GATGAATTAGCTTTAATTAAAAG-GAGtgcaaaaaataatggatgctaaatgaa----gttttctttgaaaagaaga--------------cgaaCAAGGTAGTGTAATTAGGCC-------ATGAAAACGCGGAGAGTGCAATGGgcgg-gaagaa-------------------------gaaaaaggaaggaggAGCAGAGAGAGT------ACG-AGCAGTTAACTAACAGCGATTCATAAATATGCATAGC------------AGT----------AGAGGAGGGCAATGTTGTGGTCACTCGAAGATTTTGTTAGATTGACTTTTTGA---GCACTAC-TGCTCGGAGTACT----AAGGgaatt------ggaa-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564618 329 -   823664 --GATATGAATTAAGTCTAATTAGAGT-GAGTGCAAAGGGATTCGTGAAGTGAGAGAGCAGTGAATGCT--------------------------CGAACAAGGTGGCGTAATTAGACA--------AAGAATAGCAGCATGCAAAGGAGAGATAAaggaaaagagagagagaagacgtggggggaaaaaaaagaaggaagcgCGAGAAGAGT------ACT-AGCAGTTAACTAACAGCGATTCATAAATATGCATAGC------------GGC-AAGCGGGGAGGTGTGGGGCAATGCAGTGGTCACTC-AAGA-TTTGCTAGATTGACTTTTTGAGACGCACGACGAGCTGACAGAATG----AAGAGAAGACAGTGGGGAATTGGATG
i caeJap4.Scaffold18194 I 28 C 0

a score=8517.000000
s ce10.chrX             3375007 30 + 17718866 GCGCGTTGGAATTAGAATTCAAATTGAAAT
s cb4.chrX              8455627 17 + 21540570 -------------gaaattggaaatgaaaC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   628776 26 - 33334924 ----attggaattggaattgaaattgaaac
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794781 26 +  4147112 ----attggaaatgaaattgaaattgaaac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  564947 21 -   823664 ---------GAGggaatttgaaattgaaac
i caeJap4.Scaffold18194 C 0 I 106
e caeRem4.Crem_Contig0   511480 82 -  4500979 I

a score=-9711.000000
s ce10.chrX             3375037 55 + 17718866 TAGATTCTGAGCA------CAAATTTTTTCGTCAGTTTCCGTTGCATATAATTTTTGGACA---------
s cb4.chrX              8455644 27 + 21540570 AATTATCCGTGCATTGCGCAAGATAAT-------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   628802 60 - 33334924 aattatAGGAGAAGTGAGCCAAAGAGCATAGATAA----------ATGGAATTTCTGAATGCAAACGACG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794807 32 +  4147112 aattataCGCGGAGTAAACGGGAG------------------------------------GAGAAAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564968 106 -   823664 I
e caeRem4.Crem_Contig0   511480 82 -  4500979 I

a score=-21835.000000
s ce10.chrX             3375092 69 + 17718866 CTTTCCGGTAGAGTACACACGATGAAAATTTTGTTAG--------GTC--------CGAAAATC-----------------AGaaaaaataaataa-------attaaa-----
s cb4.chrX              8455671 54 + 21540570 -----------------------GGGAGGaaaaaaaGGGttgaaacta--------gaaaaacg-----------------aaggaaagaAGAGCA-------CATGAA-----
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig0   511562 66 -  4500979 cttttccatcgaCCACAC---CTGGGAATTAtatgag--------ctc--------aaaaaatt-----------------tggaatatgaaataa-------aatgaa-----
i caeRem4.Crem_Contig0  I 82 C 0
s caeSp111.Scaffold629   628862 52 - 33334924 -TTTTCAATATGCCACAC---CTGAGAATATTGAG----------CTC--------GCGGAGCt---------------------------------------catgaaat-ga
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794839 95 +  4147112 ------GGGGAGGTAGAA---ATAGAAAGATGAAA----------TTCAAATGCAAACGACGTTTTCTCCAAACCACACCTGAGAATTGTGGCTCACCAAGCTCATAAAGTGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564968 106 -   823664 I

a score=35.000000
s ce10.chrX             3375161 18 + 17718866 taaaaaCGAGAGAAAAAT
s caeRem4.Crem_Contig0   511628 12 -  4500979 aaactcc--gaCAT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   628914 18 - 33334924 aaacgtcGGGACATATGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794934 18 +  4147112 AAAAGTCGGGACATATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  564968 106 -   823664 I
e cb4.chrX              8455725 59 + 21540570 I

a score=-4627.000000
s ce10.chrX             3375179 16 + 17718866 GAAAGTGGAAACATTG-----------
s caeRem4.Crem_Contig0   511640  4 -  4500979 ---AGTG--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   628932  7 - 33334924 TTCaatg--------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794952  7 +  4147112 TTCAATG--------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  565074 16 -   823664 --CAAGG---------GGAACGTATAg
i caeJap4.Scaffold18194 I 106 C 0
e cb4.chrX              8455725 59 + 21540570 I

a score=69658.000000
s ce10.chrX             3375195 375 + 17718866  
s cb4.chrX              8455784 471 + 21540570  
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig0   511644 387 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   628939 392 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1794959 372 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  565090 320 -   823664  
i caeJap4.Scaffold18194 C 0 I 1098

a score=58295.000000
s ce10.chrX             3375570 344 + 17718866 AATAGGAAATACACATGGTGCATACATTGACGGA---TTTCTATTC-----------GGAACAAAAGA---CTTTAGTTTTCTCAG-----------------AGCAAGAATTG--------AGCTGACAACGCTGACGACTACTACAAAAACACCTCTTCCTGCTGCCGAAGATT-GGAAAATTTTAATTGTGACTCGTA-GATGAAAAATTGTGATTT-GAGCCG--------A-------CGAGTCTGCTGTTGTTGCTGGACAAGGCAAAAAAGGCAAGTCGTTTCTTATGTGAA-GTAGGAGTCCAAGCCCCAGAGTGACGGGAAATATGAAGTATGTAATTTT-----TCGTTCAGTTT-----ACATTTGTGACGA---C-------CACTCTACGATAAAAATTATGAGCTTC----------------AGAA
s cb4.chrX              8456255 325 + 21540570 ---AAGGAATA---------AATACATTGACTGGgatttttcattcgaaaagaaaaaaaaacaaaagacttctttagttttttcagttgtttttttttttggaaaaaaaaaata---------------------------------------------tctcga-----gagaga-aaaaatcgtTAATTGGAAGTCGTGCgatgaaaaattaagatttcgAGATATCCGGTTCTGTCACG-AGAGTCGG-------------------AGAAACACACATGGAGTCCCCGAAGTAAGCGAAAG--------------------ATGAAATATGGACTAGATACATTC-----TTGTCGAGTTTTGtc-tcttcttcaaaaa---tctcagaacg-tgtaaaataaaatttatgtGCTTTCTTGGTCCGAGAGGAGA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   512031 328 -  4500979 ---GAGAAATACACATGGTGCATACATTGACAGA---TTCGTATTC-----------AGAACAAAAGA---CTTTGGCTTTCTGAg-----------actggaaaaaagaactgaCAAATGAAAATGACGACGGAGGCGACTTCAACAAAAACAC--CTTCTCGACT--CGAGATT-GGAAAACGTTAATTGTAAGTCGca-gatgaaaaattgtgattt-gaGCTA--------AGGCAAGCCGAGTTGA-------------------AGCAAAAAGCATAGAGTCCCCGAAGTAAA-GAAAG--------------------ATGAAATATGAAGTAGACAGCTTTAGGAGTTGTTCAGTAG-----TCTTGTGAAATGG---CGTTAGAACGTTATACGATAAAATTTATGTTCGTC----------------A---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   629331 330 - 33334924 ---AGAAAATACACATGGTGCATACATTGCCGGA---TTCGTATTC-----------AGAACAAAAGA---CTTCAGTTGtctaaa----------------agaaagaaaatggaacaagagaatgaaaacgaGGACGTCTTCAACAAAAACAC--CTCCTGGCTTCACAAGATTAGACAAATTTTAATTGTAAGTCGCT-GATGAGACGTTGTGATTT-GAGAAA--------AGTCAAGTCGAGttag--------------gagaaaaagaaaagaaaagagtccCCGAAGTGAA-TAAGA--------------------GTGAAAAATGGAGTGGACGCTCCC-----GGGTCCCGCCC-----AGTTATGAGACGCC--CGTCAGAATGTTGTACGATAAAATTTATGTGCTTC----------------AAAA
i caeSp111.Scaffold629  C 0 I 28
s caePb3.Scfld02_0      1795331 320 +  4147112 ---AAGAAATACACATGGTGCATACATTGACGGA---TTCGTATTC-----------GGAACAAAAGA---CTTTAGCTTTCgaag----------------aaaaagctagtaaatgaaaacaaaaagaacgacg-----tacaacaaaaacac--ctactggaaaagCgagatt-gaaaatttttaattgttaGGCGCA-GATGA-AGATTGTGATTT-GAGAAA--------AGTCAAGTCAAGTTAG------------------------ACAAAAAAGAGTCCCTGAAGTGAA-GAAGG--------------------GTGAAAAAGGGAGTCGCTGCGTCT-----TGGTCCCGCCCCTTGGACTTGTGTGACGCCGTCGTCAGAACGTTGTACGATAAAATTTATGTGCTTC----------------AAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  565410 1098 -   823664 I

a score=180.000000
s ce10.chrX             3375914 1 + 17718866 G
s cb4.chrX              8456580 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   512359 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1795651 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194  565410 1098 -   823664 I
e caeSp111.Scaffold629   629661 28 - 33334924 I

a score=-1929.000000
s ce10.chrX             3375915 20 + 17718866 ACAACTAAATACAC-------------------CCTTAA
s cb4.chrX              8456581 39 + 21540570 AAAACTCGAGCCATCCCCTCTCCCGGTGTCCCGCCCTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   512360 30 -  4500979 AAAGCTTCAGCCGG---------TGAAGAAGCGGTGTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1795652 27 +  4147112 I
e caeJap4.Scaffold18194  565410 1098 -   823664 I
e caeSp111.Scaffold629   629661 28 - 33334924 I

a score=-107037.000000
s ce10.chrX             3375935 693 + 17718866  
s cb4.chrX              8456620 977 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   512390 509 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   629689 475 - 33334924  
i caeSp111.Scaffold629  I 28 C 0
s caePb3.Scfld02_0      1795679 516 +  4147112  
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194  565410 1098 -   823664 I

a score=60147.000000
s ce10.chrX             3376628 129 + 17718866 A---TACGCACATAGAC----GTGTAC-ATCTCATCCGGC-----------CACTTTTCATCCG-AAATCTTGTGAT--TCTTG-TCGACGAATACACTAATTACCAGTGGTTATACGTGCGCACACAT-TCTC-----CAATC---------------------GGATCAAATTCGAG
s cb4.chrX              8457597 163 + 21540570 ATACTACGTACACAGACCCGAGGGCTC-ATCTCATCCGGCCAATC--TGCTCACTTTTC-------AATCTCGTGCTCGCCATA-TCGAAGAATACACTAATTAACAGTTGTTCCATCTACACACACACATATA-----CAAACACATAAAAAGCTTTTCAGATCGGATCAAATTTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   512899 133 -  4500979 A---TATGCACATAGAC-------CGC-ATCTCATCCGGTCAATC--TGCTCACTTTTCATCTA-AAATCTTGTGCT--TCGTG-TCGAAGAATGCACTAATTAACAGTTGTTATACAAACACACACATATCTA-----TA------------------------GGATCAAATTTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   630164 132 - 33334924 A---TATGCACATAGAC-------GCCTTTCTCATCCGGCCAATC--TGCTCACTTTTCATGCC-GAATCTCGTGCT--CCTTG-TTAATGAATACACTAATTAACAGTTGTTGAACAAACACACACTTGTATC-------------------------------GGATCAAATTTGAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1796195 133 +  4147112 A---TATGCACATAGAC-------GCC-ATCTCATCCGGCCAATC--TGCTCACTTTTCATGCCGGGATATTGTGCT--TCTTTCCTAATGAATACACTAATTAACAGTTGTTACACAAACACACTCTCGTAAT-------------------------------GGATCAAATTCGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  566508 132 -   823664 A---CATGTACATAGAC----GGGGGC-ATTTCATCCGGCCAATCAGCGCTCACTTTTCATGTC---------------CCATA--GAGAAAATAGATCCATTTTTAATTGGCACGTG-ACACaatctttcctttttttcattc---------------------gGATCAAATTTAAG
i caeJap4.Scaffold18194 I 1098 I 335

a score=67925.000000
s ce10.chrX             3376757 238 + 17718866 --CA-CAGCAGAATATTCTATACTTTTTCTCGTCACACGGGGCGAAAAATGA-AGC------TG---TCC------------ATGAAAGCATTTTGTGTTTATTTGGAGATGAGAATACCTATTGCTGTTTTGAAGGAATGGAAATGACGCGG-----AAAAGGGGAGGGAGAGAAAAAGCAAGCGAAACGACCTCACGCGTC-GTTTT-CATTCAAACTATGTACAGCTCGGTTTTTATTTGAAATTGAGAA-------------AATGGGAACAAATTTGA
s cb4.chrX              8457760 223 + 21540570 AACA-tcgcc----------ttctttttttccgagaaaaaaatgaaaaacga-ttctgttgatgtcgtcctaaaaaatgaaaaaaaaagaattatctGTTTATTCGTAGACGAGAATACCTATTGCAGTTTTGGAAGAATGGAAATGACgcga------------------gaaaaagaacaagCGAAACGACTTCACGCGTCGGTTTTTCACTAAAACTTGGTGC-TTCTGGTTTTTGTTT--TACGGAAGC-------------GA----G----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   513032 216 -  4500979 --TA-GTGCCCActc--ttattctctttttc----------gtgaaaaacgA-TTC------TGTcgtcc-------tgaaaaaaaacgcatTCTCTGTTTATTCGTAGATGAGAATACCTATTGCTGTTTTGGAGGAATGGAAATGACGCGA----------------GGGGGAATAAGCAAGCGAAACGACCTCACGCgtc-gtttttcattcaaactaCA----ACTTGGTTTTTATTTCATATCGAGGC-------------AA----AAACTCCAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   630296 233 - 33334924 --TA-ATGGCAATTCtacacttttatttttt----------ccgagaaaCGATTTC------TG--AACG-------GGAATATAGAAGCATTATATGTTTATTCGTAAATGAGAATACCTATTGCTGTTTTGAAGGGATGGAAATGACGCgagaagtggaagaaaagggaGTGAACAAGCAAGCGAAACGACCTCACgcgtc-gtttttctttcaaactaca----acttggtttttatttcactttggaaa-------------aa----aaatgaattgg
i caeSp111.Scaffold629  C 0 I 404
s caePb3.Scfld02_0      1796328 243 +  4147112 --AAGGTGCCTAATCCATCTTTTTATTTTAG----------GCGTAAAATGA-TCC------tg--atcc-------aga--aaaaaagcgtAGAGTGTTTATTCCTCAATGAGAATACCTATTGCTGTTTTGGAGGAATGGAAATGACGCGAGAAATGGAAGGAGA-GGAGAGAACAAGCAGGCAAAACGACCTCACGCGTC-GTTTTCCTTTCAAACTACA----ACTTGGTTTTTATTTCACTCCGAGAAGGATAAATATGGGAA----AAGTGGTTTGA
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18194  566640 335 -   823664 I

a score=-13969.000000
s ce10.chrX             3376995  77 + 17718866 AAATTGGAAGATTATATGGACAAATTATTAATCAATAATCACAAAAGTAATTGGCCACAATGTATCGAAT-----------------------------------------------------------------------GAAAAAA--
s cb4.chrX              8457983  40 + 21540570 -AAGTGGACGA------------------------------------AAAATTG--GTTATgcgtttcct-----------------------------------------------------------------------gtgaaaaaa
i cb4.chrX              C 0 I 339
s caeRem4.Crem_Contig0   513248 146 -  4500979 CAAATGGATGCATTTGGCGTTGAATTATC--TCATAAAGCAAAcaataaacttg--aaaatggatttatttcaaaataagagAATTCTTTCTAATATTATCATTTTACAAGAATATAAATCATCTTTATTTAGCACTAAAAGTAAAATAA
i caeRem4.Crem_Contig0  C 0 I 44
s caePb3.Scfld02_0      1796575  49 +  4147112 GAACTGGG---------------------------------------AACCTGG--AAAACCCATTCACTCAAACggaagat-----------------------------------------------------------ggaaaaga-
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18194  566640 335 -   823664 I
e caeSp111.Scaffold629   630529 404 - 33334924 I

a score=607.000000
s ce10.chrX             3377072 5 + 17718866 GTGAA
s caeRem4.Crem_Contig0   513438 5 -  4500979 TTGGA
i caeRem4.Crem_Contig0  I 44 C 0
s caePb3.Scfld02_0      1796624 5 +  4147112 atgAA
i caePb3.Scfld02_0      C 0 I 578
e caeJap4.Scaffold18194  566640 335 -   823664 I
e cb4.chrX              8458023 339 + 21540570 I
e caeSp111.Scaffold629   630529 404 - 33334924 I

a score=1090.000000
s ce10.chrX             3377077 95 + 17718866 TTCAGAGTTTGGCTTTAACAAAATATACACACATACATGACGGTTCGGTGGCT--CACTAGCCAAACCGGAAACACTAAACAAAAGTGGGTTGGCTA
s caeRem4.Crem_Contig0   513443 84 -  4500979 ATCTGAGCAAGGcactgacaaaatatacaCAAA-ACATA------CGGTGTCTGGTATCAAACAGA-CAAAAATACT--GCGAAAATTGGTTG---A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1796629 578 +  4147112 I
e caeJap4.Scaffold18194  566640 335 -   823664 I
e cb4.chrX              8458023 339 + 21540570 I
e caeSp111.Scaffold629   630529 404 - 33334924 I

a score=496.000000
s ce10.chrX             3377172 10 + 17718866 TTTCCGCAGT
s cb4.chrX              8458362 10 + 21540570 ttttcggaat
i cb4.chrX              I 339 C 0
s caeRem4.Crem_Contig0   513527 10 -  4500979 ATTCCGTTAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1796629 578 +  4147112 I
e caeJap4.Scaffold18194  566640 335 -   823664 I
e caeSp111.Scaffold629   630529 404 - 33334924 I

a score=-1139.000000
s ce10.chrX             3377182 2 + 17718866 AG-
s cb4.chrX              8458372 2 + 21540570 -at
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   513537 1 -  4500979 -A-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   630933 2 - 33334924 AA-
i caeSp111.Scaffold629  I 404 C 0
e caePb3.Scfld02_0      1796629 578 +  4147112 I
e caeJap4.Scaffold18194  566640 335 -   823664 I

a score=1165.000000
s ce10.chrX             3377184 4 + 17718866 TTTC
s cb4.chrX              8458374 4 + 21540570 GTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   513538 4 -  4500979 GTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   630935 4 - 33334924 TGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1797207 4 +  4147112 TTTC
i caePb3.Scfld02_0      I 578 C 0
e caeJap4.Scaffold18194  566640 335 -   823664 I

a score=87285.000000
s ce10.chrX             3377188 100 + 17718866 AGTCTGTAGATGGAGAAGGCTTCTTCGAGCTTGTAAGAGATTTCAGAAGATTCCGTAGAGACGGTTTTGAGTGGCCACGTTTCACAGGAGCAGAACATCT
s cb4.chrX              8458378 100 + 21540570 AGTCGGTCGACGAGGATGGTTTCTTGGAGCTTGTCAGAGATTTTAGCAAATTTCTGAGTGATGGTTTCGAGTGACCACGTTTGACAGGAGCCgagcatct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   513542 100 -  4500979 AGTCCGTTGAGGGAGAAGACTTCTTTGAGCTTGTCAAAGATTTCAACAACGTCCGCAGAGATGGTTTGGAGTGACCACGTTTGACTGGTGCTGAGCATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   630939 100 - 33334924 AATCGGTCGAGCCagatggttttttggaacttGTAAGAGATTTCAACAGATTGCGCAGCGAAGGCTTTGAGTGACCACGCTTGACTGGTGCAGAGCATCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1797211 100 +  4147112 AGTCGGTAGAAGCAGATGGTTTTTTCGAACTTGTAAGAGACTTCAGGAGATTGCGGAGGGAAGGTTTTGAGTGACCACGTTTGACTGGAGCGGAGCATCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  566975 100 -   823664 AGTCCGTGGAAGAGGAAGGCTTTTTCGAACTTGTTAAAGATTTCAAAAGGGTTCGAAGGGAAGGTTTTGAATGACCACGCTTCACAGGAGCAGAACATCT
i caeJap4.Scaffold18194 I 335 C 0

a score=2112.000000
s ce10.chrX             3377288 4 + 17718866 GCAA
s caeRem4.Crem_Contig0   513642 4 -  4500979 GGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   631039 4 - 33334924 GAAA
i caeSp111.Scaffold629  C 0 I 49
s caePb3.Scfld02_0      1797311 4 +  4147112 GGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  567075 4 -   823664 GTAA
i caeJap4.Scaffold18194 C 0 I 3835
e cb4.chrX              8458478 0 + 21540570 C

a score=113.000000
s ce10.chrX             3377292 8 + 17718866 GTTGTATA
s caeRem4.Crem_Contig0   513646 8 -  4500979 TGAGTATA
i caeRem4.Crem_Contig0  C 0 I 201
e caePb3.Scfld02_0      1797315 0 +  4147112 C
e caeJap4.Scaffold18194  567079 3835 -   823664 I
e cb4.chrX              8458478 0 + 21540570 C
e caeSp111.Scaffold629   631043 49 - 33334924 I

a score=0.000000
s ce10.chrX             3377300 338 + 17718866 TATACATTCATGTCTTAGTTTCTTTGAAAATTGTATTTTCGTGGTACATTTCCAGGTGCAAAAAACATGTACGAAAATGCTAATTCTCCAGGTGAAAATTGGAATTTCTTGGCATCTATGTAGTTGTGAATTTGCAAAAGTGGTCTGAATACCTATGCAAAAACAACTTGACACAACATTTCAATAAACTTAAATGCTTAAGAAACAAAAGTTTAAAGCCGAATTTCGAAATAAGATCTCCCGAAAATTCTTAAAAACGTCTTTATGTAGGTTGtttaatattaaataaaaataatCTCAGAAATTTACAGCAACTTGGATACTGAAAAATGACAACC
e caePb3.Scfld02_0      1797315   0 +  4147112 C
e caeJap4.Scaffold18194  567079 3835 -   823664 I
e cb4.chrX              8458478   0 + 21540570 C
e caeSp111.Scaffold629   631043  49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=-1093.000000
s ce10.chrX             3377638 103 + 17718866 GCAAAAAATTCAAGACACTAAAGATAGGTGAGAAGTTGCCACAGTTATTTCGAAAATTGCTATAGTTGGCGGGAAACTTTTCGGAGGGTACAGTTTTGGGGGT
s cb4.chrX              8458478  54 + 21540570 ggaaaaaattacaatcaTCCA------TTGAGCAATTG----------TTCAA---------------GCGAAAAACgt-------------attttg-----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1797315   0 +  4147112 C
e caeJap4.Scaffold18194  567079 3835 -   823664 I
e caeSp111.Scaffold629   631043  49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=1022.000000
s ce10.chrX             3377741 14 + 17718866 TCAGAAGTTTCGAC
s cb4.chrX              8458532 12 + 21540570 --agaaatattAGC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1797315 14 +  4147112 TGAAAAGTTCCAAT
i caePb3.Scfld02_0      C 0 I 272
e caeJap4.Scaffold18194  567079 3835 -   823664 I
e caeSp111.Scaffold629   631043 49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=-2130.000000
s ce10.chrX             3377755 128 + 17718866 TATTTCCGGGTCCCATATTAGATTTTTTTAATTATCTGAGGACAGTAGTTGCGTAAGAAATTCAGTTTTTATTTACCCATCACATTTTCTTGAACATTATACATAGTAGATTCTTATAATGAAATTTA
s cb4.chrX              8458544  57 + 21540570 TA-------------------AATTCTTGGAtta-------------------------------------------------attttcactgaaaacgtac---ggagATTGTTTATTTCAAActac
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1797329 272 +  4147112 I
e caeJap4.Scaffold18194  567079 3835 -   823664 I
e caeSp111.Scaffold629   631043  49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=-3147.000000
s ce10.chrX             3377883 108 + 17718866 GTATTTTGAGTTAATTTTGACTTTTTTTGAGTAACAATATTACACATCGATAGTACATTTTCAAA----------GAACGTTTTTA----CAGGAAATACGTGTCTGCTAGTTCAATTTTAC
s cb4.chrX              8458601  76 + 21540570 acattttgaa--------gacTGTCTTTTTGTTACA------CGGAACTACGGCGcgttttgaaa----------gaa---ttttg----aagaaccTTCATTTCTA---------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194  570914  98 -   823664 GTATTTTCtg----ttttataaatatttttggaaCAATGTT-CACAACGACGTTATTCCGTAGAAAATGGGAActaaacatttttgagctaggaaaacacaat-------------------
i caeJap4.Scaffold18194 I 3835 C 0
e caePb3.Scfld02_0      1797329 272 +  4147112 I
e caeSp111.Scaffold629   631043  49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=-2804.000000
s ce10.chrX             3377991 28 + 17718866 TTTTTA--AACAAATCACTGAGCAATGAAC
s cb4.chrX              8458677 22 + 21540570 ---TGGTCAACCgatttctcatcaa-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1797601 27 +  4147112 TTTTGA--AACCATAAgcttaaaaataaa-
i caePb3.Scfld02_0      I 272 C 0
s caeJap4.Scaffold18194  571012 22 -   823664 ttttca--aa-----ttcttcgAAATCGA-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   631043 49 - 33334924 I
e caeRem4.Crem_Contig0   513654 201 -  4500979 I

a score=42566.000000
s ce10.chrX             3378019 105 + 17718866 AAACTCACTGAGCAATTACTGCGAAGTCGTCTATCAAATCTTCATCGAAATCCACATGATCGTTCTGTAAAACTTTATT--------------TAAGATAACT----TT------TTTT--CAATTCCAGT---
s cb4.chrX              8458699 101 + 21540570 aaactTACTGCGCTATGACAGCAAAGTCGTCGATCAAGTCCTCATCAAAATCTGTGTTTTCGGTCTG---AACACCGTT-----------------ATTGACC----TT------TTCAAGAATATTCACC---
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   513855 103 -  4500979 AAACTCACTGTGCAATCACGGCGAAATCGTCAATCAGTTCTTCGTCAAAATCCACGTGGTCACTCTG---AAATTAGTT-----------------GTTGCATGTTGTG------TTCA--GATATTGAAC---
i caeRem4.Crem_Contig0  I 201 C 0
s caeSp111.Scaffold629   631092  99 - 33334924 AAACTCACTGAGCAATAACAGCAAAGTCGTCGATCAAGTCTTCATCAAAATCCACATGATCGCCCTG---AAAagaatt--------------ta-gtttttt----ag------ttta--gaaactga-----
i caeSp111.Scaffold629  I 49 C 0
s caePb3.Scfld02_0      1797628 106 +  4147112 aaacttactgtgCAATAACAGCGAAGTCGTCAATCAATTCCTCATCGAAGTCCACGTGATCGCTCTG---AAATCAGTT--------------TGCATTCGCT----AGGAACGTTTTG--GGTTTCAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  571034 119 -   823664 AAACTTACTGGGCAATTACTGCAAAATCGTCAATCAAATCATCATCGAAGTCCATTTGGTCGGTCTG---CAATTTTTCTTTACTTAAAATTATACACAAACT----TT------TCCA--TCTATTTGGCAGT
i caeJap4.Scaffold18194 C 0 I 286

a score=155038.000000
s ce10.chrX             3378124 219 + 17718866 ATCTTACTCCAGTCGGATCTCTTGCTATTCCTTCTACAATCGTTCCGATAACACTTGGAGAAACGTTCGCCAAACTTGTCGACAAAAAGTTATGAAGTGATACGTAGTATATTTCAATCCACGTTTTATCAAAATACTTTCTAAATGGCTCGGTGTCCTTTGCATGGTGGTTGTAGGGAAATGCTGAAAG---------------------------------------------------TTGAAACAATGACCATTTTTCAAAAAAAA--
s cb4.chrX              8458802 216 + 21540570 AGCTTACCACAAGCGGATCCCTTGCTATCCCATCCACAACCGTTCCAATAATGCTTGGCGATACTGTCGCGAGACTTGTGGAGAGAAAATTGTGCAGTGAGACGTAGTAGATTTCAATCCACGTCTTATCGAAATACTTTCGGAACGGCTCGGTGTCTTTTGCGTGTTGCATGTAGGGGAATGCTGAAAT------------------------------------------------------ATTTGTCATTGGTGGGTGAGTGAAAG--
i cb4.chrX              I 2 I 19
s caeRem4.Crem_Contig0   513958 219 -  4500979 AACTTACTCCAAGCGGATCTCTTGCAATCCCTTCCACTATTGTACCAATAACACTAGGTGACACTGTTGCCAAGCTCGTCGAGAGGAAGTTGTGCAGTGACACGTAGTATATCTCAATCCATGTTTTATCGAAGTACTTTCGGAACGGTTCCGTGTCCTTGGCATGATGGTTGTAAGGGAATGCTGGAAG---------------------------------------------------ttagtttcattttgttgtCTTAATAAATG--
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold629   631191 208 - 33334924 aacttACTGCAAGAGGATCTCTGGCAATCCCTTCAACGATAGTTCCAATGACACTGGGCGAAACTGTTGCAAGACTCGTTGATAAGAAGTTGTGAAGTGATACGTAGTATATCTCAATCCATGTTTTATCAAAATACTTTCGGAAGGGTTCGGTGTCCTTTGCGTGATGATTGTATGGGAAAGCTGGAAA--------------------------------------------------------------ATgttgtttcaaatgaaa--
i caeSp111.Scaffold629  C 0 I 61
s caePb3.Scfld02_0      1797734 209 +  4147112 GTCTTACTCCATGGGGATCTCTGGCTATCCCTTCCACAATCGTTCCAATGACACTGGGTGATACGGTCGCAAGACTAGTCGAGAGAAAGTTGTGGAGTGACACGTAGTATATCTCAATCCATGTCCTATCAAAATACTTCCGGTATGGTTCAGTGTCTTTGGCTTGATGATTGTACGGGAAtgctgaaaa-------------------------------------------------------------tacaatttttcataaaaaa--
i caePb3.Scfld02_0      C 0 I 624
s caeJap4.Scaffold18194  571439 272 -   823664 atctcaCCCTTATCGGATCTCTTGCAATTCCCTCAACTATTGTTCCAATCACACTCGGAGACACTGACGCTATACTCGTTGACAGAAAGTTGTGAAGTGACACATAGTAAATTTCAATCCATGTCTTGTCAAAGTATTTTCGAAACGGTTCCGAGTCTTTGGCGTGATGATTGTAGGGAAATGCTGAAAAAAGATATGCGTGTTTTAATTTTCGTTCCACAAACACCACTGtcacaaatttttaattgcacTACAACCTCactaacgaaaaa
i caeJap4.Scaffold18194 I 286 C 0

a score=-428.000000
s ce10.chrX             3378343 10 + 17718866 AAAACCGGCA
s cb4.chrX              8459037  8 + 21540570 --AACTAGGG
i cb4.chrX              I 19 I 284
s caeRem4.Crem_Contig0   514191  8 -  4500979 --AATTGCAG
i caeRem4.Crem_Contig0  I 14 I 51
s caeSp111.Scaffold629   631460  6 - 33334924 aaaact----
i caeSp111.Scaffold629  I 61 C 0
s caeJap4.Scaffold18194  571711 10 -   823664 aaaattaact
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1797943 624 +  4147112 I

a score=252061.000000
s ce10.chrX             3378353 543 + 17718866  
s cb4.chrX              8459329 714 + 21540570  
i cb4.chrX              I 284 C 0
s caeRem4.Crem_Contig0   514250 510 -  4500979  
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold629   631466 546 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1798567 824 +  4147112  
i caePb3.Scfld02_0      I 624 C 0
s caeJap4.Scaffold18194  571721 519 -   823664  
i caeJap4.Scaffold18194 C 0 I 4276

a score=-21771.000000
s ce10.chrX             3378896 148 + 17718866 TGTTT-----GTTTATG---------------TGATTGCGAATAAAAAAGG-------------------TAT-----TCA--------------------ACATGAAAAATCAATTA---TATAT----GCCCTCAGAAAAAGTAAAA-TGCGCTCTAATGCAAC--ACATT--CAAGTAAACACACGAAAAGGTGTGCGT-TCATCGATCGGTCGTC-GTCACA--
s cb4.chrX              8460043 172 + 21540570 tattt-----ttgcgAG----------------AATTCGTTAGGAAAAAGATGCAAAACGT---------GTT-----TTT----TCGTCGATAT------AAATGACCAATCAATTCGTTTATATAACATTCACTTGCTG-ttgaaaa-cgcgctctaatgcaTCAAACTCG--CATATAAACAGTTT---TTGTTTACAA-TAATCGACGAATTGAA---GACATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   514760 200 -  4500979 TATTTGATAATTGTAAACAA--GCAAAACTATTGATTTGTAAAGATAAAGTGGCACAAAAT---------TAT-----TTT----GCGAGGGTGTTTCACAAGACGGCCAATCAATTAGTTTATAC----TTCGTCTGCAGCCcaaaaa-cgcgctctaatgctACACACTCT--CAAGTAAACATATGAAAGAGAGTGCGT-TGATCGATTTACCCAGCGTGCCGTA
i caeRem4.Crem_Contig0  C 0 I 81
s caeSp111.Scaffold629   632012 199 - 33334924 tattt-----ttgaaatcagttgTGAAggt-----ttttcaac--aattaaTGCAATAATCTCAGTATTTTATATACACTG----CTGCAGGTGTTTCActaaacaa-aaatcaattagtTTATAC----TTT-TACGTAA-ACTAATAGCACGCTACGaaggaaataaaatgatCAGGTAAACACGAT---AGATGTTCACGTGATCGATTAAACACA-ACACCG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1799391 191 +  4147112 TGTTT-----GTGAAAG-AGTGATTGAAATATtggttttcgatgaaaatgcTGCGCTGAAC---------GATAGAGACTGTGAATTGGATATG------CATAAGA-AAACTGATTAGTTTATAG----TTTCTCTATAA-ACAAATA-CGCTTCATGATGCTAATAACACA--CCAGTCAACACAAA---CAAAATGCGT-TAATCGATCAAAAGAT-GCGACA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  572240 4276 -   823664 I

a score=-9987.000000
s ce10.chrX             3379044 57 + 17718866 AACAAAACAAAAACGAGT----------CCTGCCGATTTATATTGGCGGTTTAGCATTT------TAATAT-----GA------
s cb4.chrX              8460215 83 + 21540570 -AAGCTGGTAAAATGAGAatttccattattattcgagctttttcttaattttcttattttggtagcattttttgcggaatttcG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   632211 52 - 33334924 AAAGGCGGCAGAAGG-------------TTAAACGATTTCTTATTAGAACGC-------------TAATTC-----AATACTC-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1799582 58 +  4147112 AGCGATGG-AAAAGG-------------CAACGCaaccttctttttcaatgcACTATT-------TATTTCT----GATTCTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeRem4.Crem_Contig0   514960 81 -  4500979 I

a score=-24618.000000
s ce10.chrX             3379101 155 + 17718866 ---GAAAGTTGTTATAAAAAAATATTTCACAATTGAAACAC----------TTACTGAAGTAATAAATTAGAAATTCGCAAAAATACACGTTACAGAGCTATAATCATTGTCGTT-TATACGTCAATAAGCGCCCAAAAAAT--------GCCGGATCACTCCGAGTGGAGT----------ACGTG
s cb4.chrX              8460298 154 + 21540570 CGAAGATATTGAACTGCAACTTACTTTTACAAACgtaatattgattt----ttaaagaaataat---tcaaaaaataccagGAATAGTCATCAAAGAAGGAATAGTCGAGCTG---AAAAGACTACTAAAAA----ATAAAT---------CGGCACTTGTCCTCGAGAAGT----------ACACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515041 150 -  4500979 -GAAAATGT---------------------ATATGAAAAGTTGTTCTCCACTTACTTGAATAAC---ttaaaaagtataaaaa-----caGCAGAAATGTTATGGAAAGACTA---GAAGAATCATTTATGA----ACACGTAAACAGTAACGGAATTAATTCCGGAGTGGTCGGATTGGGAACATG
i caeRem4.Crem_Contig0  I 81 C 0
s caeSp111.Scaffold629   632263 149 - 33334924 TCAATTTGTTTATCttcttgattattttttgaa---aatagcttACT----TTAAATAATGaat---ataagaaaaacaaaaat-----atatacaGTTGAATAGCCCCGTTA---GAAGTACATGGGTGAG----GAAAAA------TTATAACGCTCctccgagaggact----------acacg
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1799640 157 +  4147112 TACATAtagtaaaagtgaaaaagaattaccaaa------agactttt----tcagttagcaaattgaaaaagagatagaaaaatcaATCATTCACAAGCAATGAACCTCGTTATTGGAAATgtaaatgaaag----aaaaat------atcttGGAATTGTCCGTGAGGAGT----------ACACG
i caePb3.Scfld02_0      C 0 I 6324
e caeJap4.Scaffold18194  572240 4276 -   823664 I

a score=-3705.000000
s ce10.chrX             3379256 43 + 17718866 -CGCGATGGCCGAAGATTTGC-------------------GCATGGCCGAGCCGGGAAGAACC
s cb4.chrX              8460452 52 + 21540570 GCCGAGGGGACTAGGATTCGCAAGAAGAGCGGCC-----------AGCGCGCGCGCACACACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515191 63 -  4500979 GCCTCCTGGCCTAGAATTTCCCGTCTTGACGGCCTCCGACGCATGTGCGCGCGCGGACACCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   632412 28 - 33334924 gCCGAGTGGCCGAGGAGTCGCAAGAAAC-----------------------------------
i caeSp111.Scaffold629  C 0 I 85
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I

a score=-5696.000000
s ce10.chrX             3379299 109 + 17718866 TTGTAAACGCGATGCATAAAAAAACAAT-----GTGTGTTCAATGAATATTGGATAAAAACAAGACTATGCGACTTACGAAATTAATACCTTACATAAAATTTTGAAATTTTTT
s cb4.chrX              8460504  83 + 21540570 TAGAGAGGACAATGG------CAACAATTGAAGGAGTGTTCAAAATGGAAT--------------TCATGCGGAAAATCGGATCAAC-----------AGGTCTTCAATTGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515254  75 -  4500979 CCGTGTGTTTTCCGC------AAATGATCGTC-GAGTATTAAAGGATGAGTAGATGA-------ACcaggagaaaaattgaa------------------------aact-att
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeSp111.Scaffold629   632440  85 - 33334924 I

a score=-11256.000000
s ce10.chrX             3379408 74 + 17718866 TCAGACTGAA----------------------------GCAGTTTTGTTG---ATTCTGGGTAATGTTTGTTATTTTAAGGTCGGTTTTAAATCATAACATTTGT
s cb4.chrX              8460587 68 + 21540570 CTGGACCGAAATGGAATCAACTTGATGTGAGATGAGCAGCAAAATGGTGa--------------------gtattttgattttg----------a-agt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515329 85 -  4500979 gtGGAAGGAA-------------GGTttgaaatttactgaaaaatcttAATACGTCTTGTTCTTTATAAGATGTTTTCAACTTGACCAAAGCGCA-AAT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   632525 57 - 33334924 --------------------------------------GCAAATTGGAAA---ggtttgtgttt------ttttcttcaagttGAGTTTTACACA-ATCATTTGT
i caeSp111.Scaffold629  I 85 I 22
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I

a score=-1636.000000
s ce10.chrX             3379482 51 + 17718866 TGAAGAATCAAGTAAATATAGGAAATTTTGAGAACAATTTTCCAGTGGCAA
s cb4.chrX              8460655 29 + 21540570 tacAAAACCGGCTAAAC-----TCTTTGCTAGAA-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515414 45 -  4500979 CGGGAAATCAACTTAAT-----AAGTTTTGAAGATTATGAT-GAGTGACAA
i caeRem4.Crem_Contig0  C 0 I 109
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeSp111.Scaffold629   632582 22 - 33334924 I

a score=257.000000
s ce10.chrX             3379533 9 + 17718866 TATTTTGTT
s cb4.chrX              8460684 9 + 21540570 TAGCTCGCT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeSp111.Scaffold629   632582 22 - 33334924 I
e caeRem4.Crem_Contig0   515459 109 -  4500979 I

a score=-4228.000000
s ce10.chrX             3379542 120 + 17718866 --ATTCTTTATATATTTTTTTAAAGCATTTTTTAAAACCCTGCATTTTTGAAAATGAATGAAATTTTCATGAACACATGTTTTTCTCATGATAATTGGTACTTTCCAAAGTCTCAAATTCGC
s cb4.chrX              8460693  82 + 21540570 GAGATCTGAATGCTTTTCAGAACACGA-----TAAAACATTGTAATT------CTAGTCAAAACGCGAACAAAGATGg---------------attgttcttttttgg--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   632604  65 - 33334924 --GTCCTTTGTGAATTTTGTTATACAA--------------------------ctgttcaaatttttcacttgaaTAT---------------ATTGGCATTTATCAA--------------
i caeSp111.Scaffold629  I 22 C 0
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeRem4.Crem_Contig0   515459 109 -  4500979 I

a score=-15698.000000
s ce10.chrX             3379662 140 + 17718866 ---------ACGCTTTAATTTTTTACAAGTAAACTCATTTTTAAAAATTCTTTAAATTT-----TTGATTTGGTGCTCTGTTGTTCAGTGTGAGATTTGAAAATTGTGTAGGTGTAATGAAACGTTGTATTACTTGTTTTACAGTTTTGAGAGG
s cb4.chrX              8460775  71 + 21540570 ---------tCGCATCACTTCTTTG-----AAATGGTATTTTAGTAGCTCATAAACC---------GATTCGATGAC-----------------TTTTGACGA-----------------------------------ATACAGTA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515568  98 -  4500979 ---------TTGCAtgtattttt---------attgtattctAAAAAACCATTGACTCT--TGATAAATTTGACAAC-------TCATTAAATATTTTAGCGATCCTT---------------------CTACCTACCTCATGGCT--------
i caeRem4.Crem_Contig0  I 109 C 0
s caeSp111.Scaffold629   632669  84 - 33334924 CAACTTTCGTTGTTTATGTTctc-------------gattttgaaattcaaaaaacaataaaaatctattcatcaat------tttgttaaaatattcagaaa---------------------------------------------------
i caeSp111.Scaffold629  C 0 I 77
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I

a score=-4345.000000
s ce10.chrX             3379802 159 + 17718866 TGTTTTTGTTAC------------CGTTGTATTCATTTGAAAGTTGGTAAAATTTCAATCGTAAT-ATTTTGACACAGTCACGTACAGTTTTCAAAATGGTTA-AAATTTTTGGGGCAGGTATACTACACATGCACTCTGAAATATTT---------AACTTTTATTTGATTACCATTTAA-----------A
s cb4.chrX              8460846 128 + 21540570 --GTTTTATTAC------------CGTCATAT---------AGTCAATAAATGTGTTACTGTAGTATTTATTAT--------------TTCTCAAAAGGACTTTAAA-----AGAGCCG---------------ACTCAGAAATTCCTTATGAAACAACtcattggtttttttcttggcCAGt--------tc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   515666 140 -  4500979 --GTATTATTGCACTGTTTTATGACGGTGTAG---------AGTCAATGAAAATCTTACTGTATT-TTTAtgct--------------ttttcaaa---actatataTACTTAGCACTG---------------ACTCGAAAAACTGT---------ATCTATTGGGCTGTTTCTCTTTCCAtgtctttcatt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1799797 6324 +  4147112 I
e caeJap4.Scaffold18194  572240 4276 -   823664 I
e caeSp111.Scaffold629   632753  77 - 33334924 I

a score=-7540.000000
s ce10.chrX             3379961 63 + 17718866 TTTGAAATTAAA-----ATACATCAA---------AAAAAGCTCGT-------TGTTCAACCTTACCATGCCACTTTTCCGATG
s cb4.chrX              8460974 54 + 21540570 tttg----------------tttcaa---------aaaacccaaacAGTT---GTTTTGAAGCCCTTTTGCCA--AATCCAATG
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   515806 57 -  4500979 tttg----------------tttcaa---------agaaCTATCGTAGTCCGACTTTTGGTACAGCCATGGCA--TCTCAAATA
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold629   632830 51 - 33334924 --------------------ATTCAAAACCG----AAAACTCTCGT-------TTTTTAGTACACACGTGCCA--TGTTTAATA
i caeSp111.Scaffold629  I 77 I 7
s caeJap4.Scaffold18194  576516 72 -   823664 tttgaaattgaacaTGGATTTCTCAAATATGCAGCAAAACTTGAAT-------TGCGTAGTTCAAA---ATCT--TCCgtaatg
i caeJap4.Scaffold18194 I 4276 C 0
e caePb3.Scfld02_0      1799797 6324 +  4147112 I

a score=280207.000000
s ce10.chrX             3380024 809 + 17718866  
s cb4.chrX              8461036 838 + 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   515871 844 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   632888 833 - 33334924  
i caeSp111.Scaffold629  I 7 I 27
s caePb3.Scfld02_0      1806121 852 +  4147112  
i caePb3.Scfld02_0      I 6324 I 4
s caeJap4.Scaffold18194  576588 863 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-10864.000000
s ce10.chrX             3380833 27 + 17718866 CCGCAAAAGAAAAA-----------CCAGAAAATAAAA
s cb4.chrX              8461874 27 + 21540570 tctcaaaaaaaaaaaa--------tctaatcagTA---
i cb4.chrX              C 0 I 135
s caeRem4.Crem_Contig0   516715 15 -  4500979 TCTTA--------------------TTACTTAATC---
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      1806977 14 +  4147112 TCCTG--------------------TGAGGTAAC----
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194  577451 22 -   823664 ------AATAGAGATATTGAAAGTTTTA----------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   633721 27 - 33334924 I

a score=3143.000000
s ce10.chrX             3380860 12 + 17718866 AAAATACATTTA
s cb4.chrX              8462036 12 + 21540570 GAAATACTTCTA
i cb4.chrX              I 135 C 0
s caeRem4.Crem_Contig0   516731 12 -  4500979 GCAATCCTTTCG
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      1806991 12 +  4147112 Cgtatattttcg
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194  577473 12 -   823664 GAAACACTTTTA
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   633721 27 - 33334924 I

a score=3244.000000
s ce10.chrX             3380872 4 + 17718866 ATTT
s cb4.chrX              8462048 4 + 21540570 GTTT
i cb4.chrX              C 0 I 195
s caeRem4.Crem_Contig0   516743 4 -  4500979 ATTT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   633748 3 - 33334924 -ttt
i caeSp111.Scaffold629  I 27 I 1
s caePb3.Scfld02_0      1807006 3 +  4147112 -ttt
i caePb3.Scfld02_0      I 3 I 1
s caeJap4.Scaffold18194  577485 3 -   823664 -CTT
i caeJap4.Scaffold18194 C 0 C 0

a score=181207.000000
s ce10.chrX             3380876 222 + 17718866 CAGAATCGAACTGCTTCTTTCATTCACTGGCTAGGTGGAGTTAACATCACATCGAATTTTAACTTTAACCAAAAATCAATGGAAATGAGTGATTTGAAAATTTTCAACAACAGATTATTATCAGTGGATGATAAAATCGGAGTTGTCTACTGGCTGAGAAACGGCACCGCAATTCCATGGGTAATCTCGTCAACGGGAAATGGATCTTCAAGTAGTCGTAAG
s cb4.chrX              8462247 222 + 21540570 CAGAACCGAACTTCCTCTTTCATCCACTGGTTGGGAGGAATCAACATCACGTCCAAcatgaatttcaaacaaaGATCCATGGAGATGAGTgacctcaaaattttccgaaaccGACTTCTATCAGTCGACGACAAACTTGGTCTCGTCTATTGGCTCCGAAATGGAACTGCCGTTCCATGGGTGATCGCTTCGACTGGAGATGGTTCGACGGCTACACGTAAG
i cb4.chrX              I 195 C 0
s caeRem4.Crem_Contig0   516749 222 -  4500979 CAGAACAGAACTTCATCGTTCATTCACTGGTTGGGTGGAATCAACATCACCTCTAACTTCAActttaatcaaaaatcaatggaGATGAGTGACCTGAAGATCTTCCGTAATAGACTTCTTTCGGTTGATGACAAACTTGGTGTCGTTTACTGGCTGAGAAATGGAACTGCAATTCCTTGGGTTATCGCATCTACTGGAAATGGTTCATCAAGCACACGTGGG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   633752 222 - 33334924 tagaatcgCACCACTTCCTTCATTCACTGGATGGAGAAAGTGAACATCacatcaaatttcaatttcaatcaaaagtCTATGGAGATGAGTGATTTAAAGATCTATCGAAATAGACTACTTTCTGTTGATGACAAGATCGGGGTCGTGTATTGGCTTAGAAACGGTACTGCAATTCCATGGGTTATCACTTCGACTGGTGATGGAACGAAAAGCACTCGTAAG
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1807010 222 +  4147112 tagaacAGAACAACCGCTTTTATTCACTGGATGGAGAAACTCAATATCACTTCTAACTTCAACTTCAACCAGAAATCTATGGAAATGAGTGATTTGAAAATCTATCGCAACAGACTTCTCTCTGTCGATGACAAAATTGGAGTCGTTTACTGGCTTCGCAACGGAACTGCTATTCCATGGGTGATAACCTCAACTGGAGATGGTACCAAAAGCACTCGTGAG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  577488 222 -   823664 CAGAACCGCACTTCATCTTTTATCCATTGGCTCGGTAGCGTGAACATCACATCTAACCTTAACTTTAATCAGAAATCCATGGAAATGAGTGACTTAAAAATATACCGTAATCGTTTGCTTTCCGTTGATGACAAAATCGGAGTTGTTTACTGGCTTCGAAATGGGACGGCGATTCCATGGGTTATTGCGTCGACTGGAGATGGAACGTCGAGTACACGTAAG
i caeJap4.Scaffold18194 C 0 I 21

a score=910.000000
s ce10.chrX             3381098 1 + 17718866 T
s cb4.chrX              8462469 1 + 21540570 T
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig0   516971 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold629   633974 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 36
s caePb3.Scfld02_0      1807232 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold18194  577710 21 -   823664 I

a score=0.000000
s ce10.chrX             3381099 957 + 17718866  
e caePb3.Scfld02_0      1807233  18 +  4147112 I
e caeJap4.Scaffold18194  577710  21 -   823664 I
e cb4.chrX              8462470  61 + 21540570 I
e caeSp111.Scaffold629   633975  36 - 33334924 I
e caeRem4.Crem_Contig0   516972  42 -  4500979 I

a score=643.000000
s ce10.chrX             3382056 27 + 17718866 TTTAAATTTCC----TCAAAAACCTTTCTTC
s caePb3.Scfld02_0      1807251 31 +  4147112 tttgaatttccatgTTCAACGGGTGTtgttc
i caePb3.Scfld02_0      I 18 C 0
e caeJap4.Scaffold18194  577710 21 -   823664 I
e cb4.chrX              8462470 61 + 21540570 I
e caeSp111.Scaffold629   633975 36 - 33334924 I
e caeRem4.Crem_Contig0   516972 42 -  4500979 I

a score=1510.000000
s ce10.chrX             3382083 7 + 17718866 AAAACAT
s caePb3.Scfld02_0      1807282 7 +  4147112 aaaactt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  577731 7 -   823664 AAAACAT
i caeJap4.Scaffold18194 I 21 I 1
e cb4.chrX              8462470 61 + 21540570 I
e caeSp111.Scaffold629   633975 36 - 33334924 I
e caeRem4.Crem_Contig0   516972 42 -  4500979 I

a score=1119.000000
s ce10.chrX             3382090 4 + 17718866 AAAT
s cb4.chrX              8462531 4 + 21540570 AAGT
i cb4.chrX              I 61 C 0
s caePb3.Scfld02_0      1807289 2 +  4147112 --gt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  577739 4 -   823664 AAGT
i caeJap4.Scaffold18194 I 1 C 0
e caeSp111.Scaffold629   633975 36 - 33334924 I
e caeRem4.Crem_Contig0   516972 42 -  4500979 I

a score=910.000000
s ce10.chrX             3382094 1 + 17718866 T
s cb4.chrX              8462535 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   517014 1 -  4500979 t
i caeRem4.Crem_Contig0  I 42 C 0
s caePb3.Scfld02_0      1807293 1 +  4147112 t
i caePb3.Scfld02_0      I 2 I 3
s caeJap4.Scaffold18194  577743 1 -   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   633975 36 - 33334924 I

a score=109349.000000
s ce10.chrX             3382095 128 + 17718866 TTCCAGCTTTCAAAGGAGAGTGGATGACAATTAGAAACAATAAATTGTACCTTGGAAGCAGCGGACACGAGCTTCGGACATTCACGGGAGAATACCTTAACGACGATGAAATGTACATTAGGGTAGGC
s cb4.chrX              8462536 128 + 21540570 TTTCAGCATTCAAAGGAGAATGGATGACGATCAGAAATGATAATCTTTACTTGGGATCAAGTGGACATGAAGTTGTGACAGCAACCGGGGAATACATCAACGATGATGAGATGTACATCAAGGTGAGA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   517015 128 -  4500979 tttcagcGTTTAAAGGAGAATGGATGACTATCAGAAACGGAGATCTTTATCTTGGAAGCAGTGGACATGAGGTTGTAACAGCTAAGGGAGAATACATTAGTGATGATGAGATGTATATCAGAGTGAGT
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold629   634011 128 - 33334924 TTTTAGCATTCAAGGGGGAATGGATGACTATTCGAAACAACGACCTCTATCTTGGAAGCAGTGGACATGAAGTTGTGACTGCTACTGGAGAATATATCAATGATGATGAAATGTATATCAGAGTGAGT
i caeSp111.Scaffold629  I 36 I 2
s caePb3.Scfld02_0      1807297 128 +  4147112 tTACAGCATTCAAAGGAGAATGGATGACTATTAGAAACAACGATCTCTACCTTGGGAGCAGTGGACATGAAGTTGTTACTGGAAATGGCGAGTACATCAACGACGATGAAATGTACATCAGAGTAAGT
i caePb3.Scfld02_0      I 3 I 2
s caeJap4.Scaffold18194  577744 126 -   823664 TCTCAGCATTCAAAGGAGAATGGATGACTATTCGAAACGATGAACTTTACTTGGGTAGCAGTGGTCATGAAGTGGTCACTTCATCTGGTGAATACATCAACGATGatgaaatgtttattaggGTAA--
i caeJap4.Scaffold18194 C 0 C 0

a score=-12332.000000
s ce10.chrX             3382223 42 + 17718866 TTTTGAATTATTTTACAAAAAAAAAACATTTT-------AACATTCTGT-
s cb4.chrX              8462671 32 + 21540570 TATTGAGTCTAACATCCAACTTGCTAAAGTTA------------------
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold629   634141 33 - 33334924 tatgaaaaagaatgacag-------aaaattt-------agaacTTT---
i caeSp111.Scaffold629  I 2 C 0
s caePb3.Scfld02_0      1807427 37 +  4147112 TATTGACATCAGTGA----------AGAGTTTCATCCTGAGTTATTT---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  577870 34 -   823664 -------CTGAGTAatctaaaaattaaattta-------ttttttct--t
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   517143 38 -  4500979 I

a score=385457.000000
s ce10.chrX             3382265 620 + 17718866  
s cb4.chrX              8462703 552 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   517181 594 -  4500979  
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold629   634174 606 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1807464 611 +  4147112  
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18194  577904 552 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-12488.000000
s ce10.chrX             3382885 45 + 17718866 -------tttGTA------TCAACTTCTTTAGAGAACAGCAAA-CCTGAGCA------CTGAACG---
s cb4.chrX              8463255 41 + 21540570 -------ATGTTA--------AAGTTCTCTGAATAGAA--CAA-ATAAAGTG------TGGAccg---
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   517775 38 -  4500979 -------Atttta------------tctttgaaaaata--caatatttCGCT------TTAATCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   634780 29 - 33334924 -----------------------AGtatataaatgaaa--aaa-ttagagc----------ACCG---
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  578456 67 -   823664 gttgaacattttaaaaatataaaattcaaagaacaataataaa-gcaaagcaaaaaaCCTGAACAGCG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1808075 31 +  4147112 I

a score=229080.000000
s ce10.chrX             3382930 534 + 17718866  
s cb4.chrX              8463302 537 + 21540570  
i cb4.chrX              I 6 I 4
s caeRem4.Crem_Contig0   517813 531 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   634809 520 - 33334924  
i caeSp111.Scaffold629  C 0 I 28
s caePb3.Scfld02_0      1808106 544 +  4147112  
i caePb3.Scfld02_0      I 31 I 11
s caeJap4.Scaffold18194  578523 553 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9860.000000
s ce10.chrX             3383464 35 + 17718866 ---------------ATTGTCATT------CTTTCTC---AAT-TTAGCTAACTTTTTTC---
s cb4.chrX              8463843 34 + 21540570 ---------------ATCGTAACTCTTGAAATTTCGG---CAGATTTCTCAG-----------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   518348 27 -  4500979 ---------------ACTGTAATT------ACTTCGA---AAG-TTAATGAA-----------
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      1808661 24 +  4147112 ---------------GATATAATC------GCTTCCA---TGT-TTTTT--------------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194  579076 48 -   823664 TTTGAGGGAGGAGgtaattttatt------gtttttattcaat-ctactgaa--------aaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   635329 28 - 33334924 I

a score=206294.000000
s ce10.chrX             3383499 415 + 17718866 TCAACTTACAGAACTGAAAACTTGTAGCTTGTGAATGTCGCATTTAAT-----ATTTGAAACTTCCTTTTTCTCATGACAGCGCACTTTTTCTTGAATGTCATTGAACACTTTCTCCATCAAAAGTCCAGATTTAATTCGGATTCCTTTGGAGCTTTTGTATTCACCGACTGAAGACATAACTGCGAGCGCC---TGAAA---AAGGAATATTTACTTT-CATCCAATGTAATACTAATGTA------GTACTTACACTATAAAATACATGAAGCGATTCTTTATAAGCACCTTCATTGAACCACGATGGAACTGCTAATCCGGCTTCTTTTTCCAAAATTAGTGCTGGCAGATTTTCACCTCCTCTATCTTGGAGAAAATCAGTTTTAGTTACTGCCTTTCTCAAGGCCTTGTCACTGACAAACCACTG-AAA
s cb4.chrX              8463877 409 + 21540570 CTCACTCACCGTGCTGAATACTTGGAGCTTGTGACGGTCACAACTGATATGtcccttttga-----tttttctcatggcacctcactttttcttgaatgtcgttcaaaattttgtccagCAAAAGTCCCGTTTTAACTCTGATCCCCTTTGAACTTTTGTACTCTCCAACAGATGACATCACAGCTAGAGCC---TGAATTCAAAGAAACATTGACT-T-CATTTAAATTCCA---------------TTATTTGCCTTGTAGAACACAGTAAGCGACTCTTTGTAGGCTTCCTCGTTGAACCAGGACGGAACTGCTAGACCCGcatctttttccaaaatcaaagCTGGAAGATTTTCATCGGATCTTTGCTGGAGAGTTTGGGATGCGGCAGTTGCTCGTCGCAAAGCTTTCTCACTGATAAaccactgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   518375 416 -  4500979 TAAACTCACGGAACTGAAGATTTGAAGTTTCTTCTGATCGCAACTAAT-----TCTATTgacacttttcttttcatggCAACGAATTTTTTCTTGGatatcattgaaaattttatcaagaAGAAGTCCTGCTTTAATTCGGATTccttttgaacttttataTTCTCCAACAGATGCCATGACAGATAGTGCC---TAAAT--------ATATTTACTAT-CAtaaatgttccaaaaaaagagagagttttttttACACTGTAGAACACATGCAACGATTCCTTGTATGCCTCCTCATTGAACCATGCTGGAACTGCGAGACCTGCTTCCTTTTCTAAAATCAGCGCTGGAAGATTTTCTTCCGACTTTTCCTGAAGAGTCACTGATTTGGATGTCGCTTTTCGCAGAGCTTTGTCGCTGATGAACCACTG-AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   635357 406 - 33334924 AAGGCTTACAGTGCTGAAAACTTGTAGTTTCTGCCGATCACAGCTGAC-----ACCTTCGGT---TTTCTTCTCATGGCAtcgaactttttctttgatatcATTGATTATTTTATCCAGAAGCAATCCagttttgattctgattccTTTCACACTATGATATTCTCCAACGGAAGCCATGACAGACAGCGCc---tagaa--------actttttcaatggaTTAACCTTCAATAACCTAAA------GTT--TACCTTATAGAAAACAGTAAGTGACTCCTTGTAAGCTTCTTCATTGAACCATGAAGGAACTGCTAGCcctgcttctttttctaggaTCAAAGCAGGAAGATTCTCTTCAGATCTTTCTTTCAGTGTATTTGACTGACTTGTTGCTCTTTGTAATGCTTTCTCACTTATGAaccactg-aaa
i caeSp111.Scaffold629  I 28 C 0
s caePb3.Scfld02_0      1808685 408 +  4147112 GTAACTTACAGAACTATAAACTTGGAGTTTTTGACGGTCGCAACTGAT-----ATTGcttgtcacttttttgtcATGGCATCTAACTTTCTCTTGGATATCAGTGATAATTTTGTCTAGAAGCAGTCCtgttttgattctgattccTTTTGTACTCTGATAATCTCCAACTGAAGCCATCACAGAAAGTGCC---TAGAA--------AATTTATATGT---TTGGcagtttcagatttgaa------gTTCCTACTTTATAGAAGACGTGGAGAGACTCTTTGTACGCCTCCTCGGTGAACCAAGATGGAACAGCAAGTCCAGCttctttctccaaaatcaAGGCAGGTAGATTCTCATTTGATCGTTCTTTTAGAGTTGATGATTGAGCAGTGGCTCTTCTCAAAGCTCTATCACTGATATACCACTG-AAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  579124 399 -   823664 aaaactcacagtaCTGTAAACTTGAAATCTTTTCTCACCACAGTTTGC---------TTGA-----TTATTTTGATAACAGTCTGCTCTTGACTTGATATCCTGCAGAATTTTGTGAAGGAGAAGTCCAGATTTCGGTCGAATGCCTCTTGGGCTGTAGTAGTCTCCGACCGATGACATGACGGATAGGGCCtgttaaaa--------atgttaaatgt-tttttatccTTTTCTGA-----------TGCCTTACACTATAAACGACTTCTTTTGCCTCTTTATACGCATCCTCGTTGAACCATGAAGGAACCGCTAGACCAGCTTCTTTTTCTAAAACCAGAGCCGGTAGATTTGCTTCTGCTCTTCCTTTGAgtaaaactgatttttctgCTGCTCTGCGCAATGCTCTTTCACTAACATCCCACTG-AAA
i caeJap4.Scaffold18194 C 0 I 1229

a score=-9413.000000
s ce10.chrX             3383914 45 + 17718866 TTTTATTTAATATTAAACATAGATAACTATTATTTTGCT------TACTGG
s cb4.chrX              8464286 43 + 21540570 taaaa--tgagaaTT-GAATCAATTAGGTTCTTATAAGA-----Ataccgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   518791 48 -  4500979 TACTA--AGATATTG-GTATAGGTAGAGGTTACAGAATGTTCCCATACCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   635763 40 - 33334924 aacaa--aaaagtta--gaaGAATTATAATATTATATTC-------ACCGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1809093 44 +  4147112 TCTGA--TGATTTCATTTCTTAACTAGAATATCTTTGTC-----CTACCgg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  579523 1229 -   823664 I

a score=148945.000000
s ce10.chrX             3383959 271 + 17718866 ATTTTTTCTAGCCATCTTCTTATCTGACTCTGTTAGGTTGAAATAGTTGTCCCATTCTCCTAGTTGAAAGTCACAATCAAGTTTGGGAACGAGTAACTGCAATCAGCATATTAAAAAC-------------TTGTGTTCTGTTTCCATGAACCTACAAAGTCATCCGGTTTAGCTACAGTCTGCACCGGAGGCGTAGCATTCGGAAACATTGTATTTCCGACCGTTTGAAGAGTCATCAAACATCGCTCGACAGGGCTACTCCGAAACAATAACTGAAAACTGA
s cb4.chrX              8464329 269 + 21540570 attttttttggcttgcTTCTTGTCATTTTCAGTTAGATTGAAGAAATTGGTCCATTCATCAATTTGGAAAGCACAGTCAAGTTTTGGAACCaggagctgaaaataa--aaggTAAGCT-------------TTGTACTCAAAGTGCGAGAGCTTACAAAATCATCCGGTTTTGCAACAGTTTGCACCGGTGGAGTTGAATTCACAAACATAGTATTTCCTACTGTTTGAATTGTCATCAAACATCTCTCAACTGGACTACTACGGAAcaacaactgaaaaaagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   518839 269 -  4500979 GTTCTTACGAGCTttatctctctcttcttcgGTCAGGTTGAAAAACAGTGCCCACTCATCAATTTGAAAAGAGCAGTCAAGTTTTGGAACTAGCAGCTGAAAATTAGGATGGTTTCCT-------------ATGGAGTTTCTCTCTGTATTCTCACAAAATCATCAGGCCTCGGCATTGTTTGCACCGGTGGTGTTGCATTCGGGAACATTGTGCTGCCGACTGTCTGAATTGTCATCAAACATCTCTCGACAGGACTACTCCGGAACAATAACTGAAAGTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   635803 271 - 33334924 ATTCCTCCTAGCTTTTTGcttgtcattttcagtcaaattgaaaaatagaccCCACTCGTCCAGTTGAAAATTGCAGTCAAGTTTTGGAACCAGTAACTGAAAACATAATCTGTTACTG-------------TATAAAACGTTCTTTGAGTTCCTACAAAATCGTCAGGTTTTAAAACAGTTTGCACTGGTGGAgttgaattcgaaaacattGTGTTGCCGACAGTTTGTAATGTCATCAAACATCTCTCAACAGGACTACTCCGGAATAATAACTGAAACAACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1809137 272 +  4147112 atttcttttcgatttttctttctcctcttcggtcaaattgaaaaagagtcCCCATTCATCCAGTTGAAATGAACAGTCAAGTTTAGGTACTaacaactgaaattgaaaaatatcaatg------------aggtgtcattttttctgatttcttacAAAGTCATCCGGTTTTGGAACAGTTTGCACTGGTGGTGTGGCATTTGGAAACATAACCTCTCCGACAGTTTGTAATGTCATCAAACATCGCTCGACTGGACTACTCCGGAACAAtaactgaaagaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  580752 284 -   823664 ATCTGTTTTAATGTGCTCTTTTTCTTGTTCAGACAAGTTGAAAAACTGTTGATACTCATCGAGGAGAAAGGGACAATCCATTTTTGGGAGGAGAAGCTGAAAAccatttatatttttttctcagtgcatgtttataaatttttcaaataaacttACAAAATCATCATTTCTGGGCACAGTTTGAACAGGCGGAGTTGCGTTCGGAAACATCACTTTCCCTACCGTTTCAATAGTCATCAAACACCGTTCCACGGGACTACTTCTGAATAATACCTAAAAAACAA
i caeJap4.Scaffold18194 I 1229 I 109

a score=177905.000000
s ce10.chrX             3384230 303 + 17718866 -------CA-TTATTCAAATTATATTC---------------------------------------------------------------------------------TTTACTTGGAATTTTACTTGCGATGAGAGCATTCTCGCATCAACGAA---AGAGTTAACATATCGATCACGAAGTACTTTACCCATCAGTCTTGCTTGCTCGAAACCTTCCTGAA-AAATATCAGATACT-TTGTTA---TCTGCTAGATATCATTTGATCGC-AAAGTGATTAATTTTGTTAAGATAACATACATCTGTCAGTTGTCCCAAACCACGGTAAAAATAAGACTTTGCCTCCTCCGATGTGACGTTGAGAACCGGTGCTCGAGCTCCATGGCGGAATATCTAGAA
s cb4.chrX              8464598 309 + 21540570 -------catcattttcaaccaaatttc--------------------------------------------------------------------------------cATATGCCCTTTCTCACTTGCGTCGGTAACATTCTGGCATCCACAAA---CGTGTTCACATAACGATCTTTGAGTACTTTTCCAATCAATTTTGCTTGCTCGATACCTTGCTGAagtaaaaacaaatttt-ttgtatctgtTATCT-GATGACACTTGATCCAGCAAGTCATTAATTTTGTTAAGATAACATACGTCTGTCAGTTGGCCCAAACCACGATAGAAATAAGATTTTGCCTCCTCCGAGGTGACATTGAGAACTGGTGCACGAGCTCCATGACGGAAGATCTATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   519108 305 -  4500979 ----------TATTTTGTGTTATGTTTC------------------------------------------------------------------ATTCTTG------TCATAGTCTC---CTCACTTGCGTTGGCAACATTCTAGAATCGACAAA---CGAGTTCACATAGCGATCTTTGAGGACTTTTCCTATCAGTTTTGATTGCTCGATTCCTTCCTGAAAACAGACGAGAGATA-TTGTGT---TTTTCT-GCTAACATTTGATC---CAAGTGATTAATTTTGTTAAGATAACATACGTCCGTCAGTTGGCCCAAACCACGATAAAAATAGGATTTTGCTTCTTCCGAAGTTACATTGAGAACTGGTGCTCTGGCACCGTGACGGAAGATCTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   636074 295 - 33334924 -------TG-TGTTTTGATTTCC-------------------------------------------------------------------------------------CATATTTAC-TTCTCACTTGGGTTGGTAACATTCTGGGATCTACAAA---TGAGTTGACATAACGATCTTTGAGTACTTTACCGATCAGTTTCGATTGCTCGATAccttcctg---aaaaatgagagatatTTGGAT---TTTGCT-GATAGCATTTGATCTG-AGAGTGATTAATTTTGTTAAAATAACATACGTCCGTCAGTTGTCCTAAACCAcgg-aaaaataagattttgcTTCCTCCGATGTGACATTGAGAACTGGTGCTCGAGCTCCATGACGGAAAATCTGCAA
i caeSp111.Scaffold629  C 0 I 150
s caePb3.Scfld02_0      1809409 300 +  4147112 -------ta-tgCTTTGTTCTTTGTTG---------------------------------------------------------------------------------TATTGTGAT-TCCTCACTTGTGTAGGCAACATTTTTGCATCCACAAA---AGAGTTCACATAGCgatctttcagaatttttcccaTCAGTTTTGCCTGCTCAACtccttcctgaa-aaaaatgagagata-tCGTGT---TTTTCT-GATAGCGTTTGATCTC-AAAGTGATTAATTTTGTTAAGAAAACATACATCCGTCAGTTGTCCTAAACCGCGATAGAAATAAGATTTTGCCTCCTCTGATGTGACGTTGAGAACTGGTGCTCGGGCTCCGTGACGgaaaatctgaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  581145 382 -   823664 CAAtattca-gaatttaaattcaGGtttttttCTCAAGAAAAGTTTTTGAGTCTTACAGAAAACTCGTTTAAAATCTTCTAcgtgacagttctgattcgtgGTAGTCTCATTTGTACCTACATACTTCTGATGGAATCAACCGTGGATCTATAAAATGCGGGTGAAGATATTTGTCCTTAAGGAATTGCCCAACAAGAGTCGCCTGCTCGACTCCTTCCTG---AAATTCGAGAGATA----------TT--CT-TGTGGCATTTAGATCG-AAAGTGATTAATTTTGTTAAGTAAACAAACATCCGTCAGTTGGCCTAAACCACGGTAAAAATAAGATTTCGCTTCCTCCGAAGTGACATTGAGTGCTGGCGCTCGAGCACCATGccggaaaatctgaa-
i caeJap4.Scaffold18194 I 109 C 0

a score=-1285.000000
s ce10.chrX             3384533 3 + 17718866 GAA-
s cb4.chrX              8464907 3 + 21540570 CAA-
i cb4.chrX              C 0 I 175
s caeRem4.Crem_Contig0   519413 3 -  4500979 ATA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1809709 3 +  4147112 caa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  581527 3 -   823664 -aat
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   636369 150 - 33334924 I

a score=1885.000000
s ce10.chrX             3384536 5 + 17718866 GGAAT
s caeRem4.Crem_Contig0   519416 5 -  4500979 AAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1809712 5 +  4147112 aaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  581530 5 -   823664 gaaat
i caeJap4.Scaffold18194 C 0 I 400
e cb4.chrX              8464910 175 + 21540570 I
e caeSp111.Scaffold629   636369 150 - 33334924 I

a score=-1124.000000
s ce10.chrX             3384541 23 + 17718866 -----ACTTAGATGACAAAGAAAATTTT
s caeRem4.Crem_Contig0   519421 28 -  4500979 CTCGAATAAAGATGAGTgagataatttt
i caeRem4.Crem_Contig0  C 0 I 86
s caePb3.Scfld02_0      1809717 13 +  4147112 --------aggatga--aaggtc-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  581535 400 -   823664 I
e cb4.chrX              8464910 175 + 21540570 I
e caeSp111.Scaffold629   636369 150 - 33334924 I

a score=732.000000
s ce10.chrX             3384564 18 + 17718866 GAAACATGTTAGCAGTGG
s caePb3.Scfld02_0      1809730 18 +  4147112 aaaaaatgagagaagtgg
i caePb3.Scfld02_0      C 0 I 222
e caeJap4.Scaffold18194  581535 400 -   823664 I
e cb4.chrX              8464910 175 + 21540570 I
e caeSp111.Scaffold629   636369 150 - 33334924 I
e caeRem4.Crem_Contig0   519449 86 -  4500979 I

a score=0.000000
s ce10.chrX             3384582 577 + 17718866  
e caePb3.Scfld02_0      1809748 222 +  4147112 I
e caeJap4.Scaffold18194  581535 400 -   823664 I
e cb4.chrX              8464910 175 + 21540570 I
e caeSp111.Scaffold629   636369 150 - 33334924 I
e caeRem4.Crem_Contig0   519449  86 -  4500979 I

a score=367.000000
s ce10.chrX             3385159 203 + 17718866 CCAAAATTCTAGGTACATTTTTTTCAAC--ATAATTTTGTTTATTGTGATA--AAAAATGTTCTGATATAGTTCCAGAT-AGATATTTTAAAACAACTTCTCTTTAAAATT---GATGTTTCTGCTTACACT--ACTATTGCTCAAAACGGCAACAATTTTTAAAACTAGTTCAACTAA------TCCTACAAATAGTCTGAAAAATTATACTT-CCAC-------T
s cb4.chrX              8465085 199 + 21540570 cCTAAATGTAagacaaaaagttttcaactgataaatt-gtttatcataatatcaagagtgtttcg--------tcagttgacatattttaata----ttttacATAGAACTTAAGATATtcaagctcaaacttgactgt-----AAAAGGGct----tttttattacaggttcAACGGAATCATTTTTTGCA------CTGAAACATTGTTTGTGCCACATTTATGG
i cb4.chrX              I 175 C 0
e caePb3.Scfld02_0      1809748 222 +  4147112 I
e caeJap4.Scaffold18194  581535 400 -   823664 I
e caeSp111.Scaffold629   636369 150 - 33334924 I
e caeRem4.Crem_Contig0   519449  86 -  4500979 I

a score=584.000000
s ce10.chrX             3385362 3 + 17718866 TTC
s cb4.chrX              8465284 3 + 21540570 TTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   519535 3 -  4500979 TTT
i caeRem4.Crem_Contig0  I 86 C 0
e caePb3.Scfld02_0      1809748 222 +  4147112 I
e caeJap4.Scaffold18194  581535 400 -   823664 I
e caeSp111.Scaffold629   636369 150 - 33334924 I

a score=207.000000
s ce10.chrX             3385365 1 + 17718866 G
s cb4.chrX              8465287 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   519538 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   636519 1 - 33334924 G
i caeSp111.Scaffold629  I 150 C 0
e caePb3.Scfld02_0      1809748 222 +  4147112 I
e caeJap4.Scaffold18194  581535 400 -   823664 I

a score=21959.000000
s ce10.chrX             3385366 249 + 17718866 ACTAACCACATGAACCGAAATAAGTTGCGTATG-GACAGAAGCTATGATCACAAGTATGGACACGTAGAATAACACCCTCATCCTG--CAACAGTATAG------CTTT----------------------AGAATGTTACGTGATTTTATAGTGAATTGAAGTTGAGG----TTTAGAGTATAATATATTCCGTTCACAAT---------------AACGACGACTGGAAAA---TGCGAGCGGGGAAAAT-GAAAACAAAAG-----AGATGTATTCTGCAAACTCAATAGTCATTGAAAA---------TTTGC---------------------
s cb4.chrX              8465288 264 + 21540570 ACTTACAACATGAACTGAAATCAGCTGTGCCTGAGATAG-GGCAAAAATCACAAATGGGAACACGTAGAATAATACCCtcatcctg--aaaa---atag------ac-----------acacgaaatattcaaaacttgaC----TTATAAAGGGT-GCATCGAAACGGGGTTATGGTATTTTAATTTATTCCATCTCCTAC------TAGTTTtcaaaagaagaggaagaagaataacagtcgaaaaagag-acaaaaaataaaGCAGAACACAATGCTGAA---------ATGATTCAGAG---------TTTCC---------------------
i cb4.chrX              C 0 I 112
s caeRem4.Crem_Contig0   519539 245 -  4500979 ACTTACGACATGAACAGAAATAAGTTGAGCTTG-GATAGCTGCAATAATCACAAGTATGAACACGTAGAATAATACCCTCAtcctgcaaaaa---atga------attg---------aattggaaaa---gaaaCGCGAC----TTTTATCGTGA-TTGTTGTAGCGG----ATTATACTATAATTTATGC-----------------------CAAAGGATGATGGAATAAAAATACAGGCGGCGAAGAACGGAGACAATAAAAC--ACCAGAATGATAAG-------TTATTGATAACAA---------TGTTC---------------------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   636520 245 - 33334924 ACTCACCACATGAACAGAAATGAGTTGGGCCTG-AATGATAGCAATGATCACAAATAGGAACACGTAGAATAATACcctcattctg--aaataatattaTTCACTGTTG---------ACACG--------GAAGAGGCAC----TTTTATAGGAG-TACTAGAAAAGG----ATTAAACTATAAtttattctgtt------------tctttGTTTGTAGGGGCT----------TGTAgtagagaaaagagcaaaacaACGA-----TCCA---TTTTGAA-----------CAATAGAAA---------CGTCGAGATTTt--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1809970 297 +  4147112 ACTTACCACATGAACTGAGATGAGTTGTGCTTG-AACGGTACCAATAATCACAAGGAATAACACGTAGAATAATAccctcattctg--aaaatatacaa------attggacaaaaaaacacg--------gaaataCAAC----TTTTATAGAAGATTTTCGAATCCG----ATTATACTATAATATATGCTGTTCGATGCAAACTGCTTGTGTCGGAAGAGGGTGAGAAtga--taaaatagaaaatggacaaacacaaaaa-----acaaaacttatgAA---------TTTGATAGAAAGAATGTTCCCATTgtaaatttccgaaaattcagaa
i caePb3.Scfld02_0      I 222 C 0
e caeJap4.Scaffold18194  581535 400 -   823664 I

a score=-1337.000000
s ce10.chrX             3385615  75 + 17718866 AACGTATGAGTC----AGACGACGCCAAGAAAA-------------TGTCTGTTACCAATTGA-----GAC-----AATGAATGT-GCTGATGCTCTGATAGC
s caeRem4.Crem_Contig0   519791 101 -  4500979 AACACATGAATCAGTGACAAAACACAAAGAAGAGGGGAAAATGACAGAAtcttgatgaaaaaagtgCGTGCATCGAAATGAATGA-GCAGGTACT-TCCTCGG
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold629   636765  69 - 33334924 --tataaaa-------gaaaagtgcAGAGAAGG-------------TTTTCATGCTTGGATA------TCC-----AATGAATGATCCTGGTACT-TGCTCAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810267  82 +  4147112 aacataaaattcaatgggaaagagaaaaaaaga--------------catcaTGATCAAATATCTGTGTCT-----AGTGAATGA-CTTGgtact-tgctcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  581535 400 -   823664 I
e cb4.chrX              8465552 112 + 21540570 I

a score=9701.000000
s ce10.chrX             3385690 21 + 17718866 AATTTATCGGTGGAAATTTTT
s caeRem4.Crem_Contig0   519892 21 -  4500979 AATTTATCGATGAAAACTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   636834 16 - 33334924 AATTTATCGatagaaa-----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810349 16 +  4147112 aatttatcgatgaaaa-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  581935 21 -   823664 aatttatcgatgaAAAGACCT
i caeJap4.Scaffold18194 I 400 C 0
e cb4.chrX              8465552 112 + 21540570 I

a score=80319.000000
s ce10.chrX             3385711 127 + 17718866 TTTTTTTGCTGGATGATGATTGTGTTGTAATTTG-CAGAAGGTGGTGCCCTCTC-----TGCCCACCGCTCAACGATTTATGGCTTGTCGTAC------ATACGTG--GGG---GCCCCAGAG---------GCGAGAGATAGAGATCCC------GAC
s cb4.chrX              8465664 143 + 21540570 aatttggggtgCAAGGTGATTGTGTTGTAATTTTCCAGA----GGTGCCCTCTATCTGCTACCCACCGCTCAACGATTTATGGCTTGTCGTACGACACGAGACGGT--GGG---CCTCGACCGAC-------ACAAGAGATAGAGATCCCGAGACTGAC
i cb4.chrX              I 112 C 0
s caeRem4.Crem_Contig0   519913 123 -  4500979 -------------AGATGATGGTGTTGTAATTTG-CAGA----GGTGCTCTCTCT----TGCCCACCGCTCAACGATTTATGGCTTGTCGTAC-ATGCGAGACGGT--GGTGGCCCCCCATCGACTG-----CCGAGAGATAGAGATCCC------GAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   636850 133 - 33334924 ctttttgaatgggTGTCGATTGTGTTGTAATTTG-CAGA----GGTGCCCTCTC-----TGCCCACCGCTCAACGATTTATGGCTTGTCGTAC-----GAGACGGT--GGC---CCCCGGTCGCCTGACAAAACGAGAGATAGAGATCCC------GAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810365 135 +  4147112 gtttttgaatgggtGATGATTGTGTTGTAATTTG-CAGA----GGTGCCCTCTC-----TGCCCACCGCTCAACAATTTATGGTTTGTCGTAC-----GAGACGGTGGGGC---CCCCCGACGCCTGACGAAAGGAGAGATAGAGATCCC------GAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  581956 113 -   823664 -----------TTGGATGATTG---TGTAATTTG-CAGC---------CTCCTC-----TGTCCACCGCTCAACAATTTATGGCCTGTCGTACATAACATGACGGT--GGG---CCGGGAGCAAGT------GCGAGAGATAGAGATTTC------AAC
i caeJap4.Scaffold18194 C 0 I 21

a score=-3419.000000
s ce10.chrX             3385838 48 + 17718866 TTCGGGcttctt--cttcttcttcttcttcttcttttccttccttttctt------------
s cb4.chrX              8465807 62 + 21540570 TGAGAATTTTCTCGCggcttcttcctcttctttcttctgcttcttattctccttGCATCGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   520036 20 -  4500979 TGAGGATATTT---CGGCTTCTG---------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   636983 36 - 33334924 TGAGA--ATAt---cggcttcttcttctttttctttttttt---------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810500 24 +  4147112 TGAGAATATAt---cggcttcttc--------------ttt---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582069 21 -   823664 I

a score=67083.000000
s ce10.chrX             3385886 143 + 17718866 TCGAGAAG------ATGGACACGAGGGCAACAATGAAGGCAATGATGGG--TGAACTA-GTGCAATTAAACAAGCAATAAGATTCAATTGCTCACTTGCTTTTTTAA-CCCATCAATGTGCCCCT--TAATCTTGGTTTC--------------------ATATCTAACA-AATAA
s cb4.chrX              8465869 146 + 21540570 TCAAGGAGGG-----------------CAACAATGAAGGCAATGATGGG--TGAACTAGGGGCAATTAGACAAGAAATGAG-----ATGGCTCACTTGCTGTTTTAA-CCCATCAA-GCGCCGCTAAtatgctttttttttccaatctcTCATCTTCTGTGTTTTTGACA----AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   520056 151 -  4500979 TCGAGAAGGACACGACAATGACGCGACCAGCAATGAAGGCAATGATGGG--TGAACTA-GAGCAATTAAACAAGAAATGAG-----ATTGCTCACTTGCTTTTTTAA-CCCATCAA-GTGTCTTTAATGTGCTCCGTTTT--------------CTCTGTATTTTTGACA-CAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   637019 149 - 33334924 tcgagaagga---CAAAACGATGAGGGCAACAACGAAGGCAATGATGGG--TGAACTA-GAGCAATTAAACACGAAATGAG-----ATTGCTCACTTGCTTTTTCAATCCCATTAA-GTATCACTAATATCCTCTTGTTT---------------TATGTTATTCTGCGGACATAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810524 143 +  4147112 tcgagaAAG-----AGGACGATGCGGGCAACAATGAAGGCAATGATGGG--TGAACTA-GTGCAATTAAACACGAC---GG-----ATTGCTCACTTGCTTTTTTAA-CCCATCAA-GTGTCACTAATAGGCTTCCGTTT---------------TATGTATTTTTGAGAGGAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  582090 133 -   823664 TCGAGAAGGA----------GCGCGA-AAATAATGAGGTCAATGAAGGAATTGAAGTA-GAGCAATAAAACACGGAATGTG-----ATTGCTCACTTGCTTCTTCAA-CCCACAAA-TTGGTTCTGTTATG------TTT---------------TCCGAATGTAATACACGA---
i caeJap4.Scaffold18194 I 21 I 4247

a score=2930.000000
s ce10.chrX             3386029 98 + 17718866 AAACTATTTTGTATGATTCAAATTTGTGAAAAAAAAGGACTGAACAGG----GAATACACAAAAAAACAACAAAAAAA-----------------AAGAAAATATCA------AATCTTATCAAT
s cb4.chrX              8466015 96 + 21540570 CCAA---------------------GTTAAAGCAGATAAATCAACAAA-------AGTGCCAGTggaa-ggaagaaaagagaattgGTTGGGCAGAACAAAACAATATGACCTAATCTTATCAAT
i cb4.chrX              C 0 I 2714
s caeRem4.Crem_Contig0   520207 88 -  4500979 gcaat-------------------ttttaaagaatataAATCAACAGATTACGACAGAACATATGTAC-Gcaggagaa-----------------aacaaaacgttaTGATCTAATCTTATCAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   637168 91 - 33334924 CGAACATGTTGga-----------tgggaaaaaatgagaactaATAGACTACAACTAGAC-----GGC-gtaaaacaa-----------------atgaaaacaacatGTTCCAATCTTATCAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1810667 85 +  4147112 ACAACTATAtcta-----------caaaaagaaataagaactAATAGATTATGAATg------------tcaaaataa-----------------aagagaacATCATGTTCTAATCTTATCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I

a score=629.000000
s ce10.chrX             3386127 4 + 17718866 TGAA
s caeRem4.Crem_Contig0   520295 4 -  4500979 TGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   637259 4 - 33334924 CGAA
i caeSp111.Scaffold629  C 0 I 545
s caePb3.Scfld02_0      1810752 4 +  4147112 TGAG
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I

a score=-547.000000
s ce10.chrX             3386131 2 + 17718866 -TG
s caeRem4.Crem_Contig0   520299 2 -  4500979 -TG
i caeRem4.Crem_Contig0  C 0 I 1483
s caePb3.Scfld02_0      1810763 2 +  4147112 tt-
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I

a score=461.000000
s ce10.chrX             3386133 73 + 17718866 TGTTGGTTGATAATGAATAAGAGCATGCAATGCAACTTGAACGAAAATAATAAAATATTTTTTGGCCCAACAT
s caePb3.Scfld02_0      1810765 66 +  4147112 tatttattagtGGAGAAGAAAGACAAACAAGG-AAGTCAGTTGGAAACAGT------TTCTCTCATTGAACAT
i caePb3.Scfld02_0      C 0 I 168
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=0.000000
s ce10.chrX             3386206 188 + 17718866 CTCACAAAAAAATTGTGAGATGAACTGCAATGTCTAAGGTGTAAAACTTGTGACAGGGCTTATGGGCTTAACGGCCACTTTTTCAGATTGAAACTCAGCACTTTGTATACATCAAGTTCTTTATAAAACTTTCTTGTGTGAAAAGGTGAACCTCCATTTTGACAAAACTCGTACAGGAAGTGAAGCTG
e caePb3.Scfld02_0      1810831 168 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=1504.000000
s ce10.chrX             3386394 103 + 17718866 AGTAAGCTTTCAAATAACAAAATTTGAGTGAATGAACCGTAAACTAATTCAG--CAAAACTAATTCAGCAAGGGCAGTAAGGTCATACTAATTGATATTATTTAA
s caePb3.Scfld02_0      1810999  95 +  4147112 ggtaaaattacaaatgaaaaaagttgagtaaaagtgc--------aattcagtacaaaaCGTGTTCAACCGtgaaatttatattttcgaaaatgaga--atttaA
i caePb3.Scfld02_0      I 168 I 96
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=0.000000
s ce10.chrX             3386497 88 + 17718866 GCATATTTTAAATTGCTAGACACTCAACTTTGGTTACTTTGAATGCCTGTCGACCAAAAATGTACCGAAATTAACAAAAATACCAACA
e caePb3.Scfld02_0      1811094 96 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=640.000000
s ce10.chrX             3386585 114 + 17718866 AAAAAAAAACTAAAA-CCCTGCAACTGCGCCAAAATCAAATTGAATTTTAGCAAAGTTATCACAAAACTGTGATTTGCTATAATTTTTTAAAAAATTGTTTTCGTTCAGTCGTTT
s caePb3.Scfld02_0      1811190  91 +  4147112 aaaaaaaaacaaaaagtacagaaactgtctt---------ttgaaatttgaatagtttgCCGCAAGGc-gtga------ataaatttttc--------tctccACTTATGTGTTT
i caePb3.Scfld02_0      I 96 I 20
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=0.000000
s ce10.chrX             3386699 26 + 17718866 AGTGATTTCGGGTGATTTTGAGTCTA
e caePb3.Scfld02_0      1811281 20 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=-465.000000
s ce10.chrX             3386725 308 + 17718866 GTTAAGCAC-GAAAATCAACAAACACAACTCACCCCTCCAGAA------CAAATATTTTAGTCAGTTAGACATTCTCTAAGTGGATATAAAGGAACAAAAAACAACCCTATCTAGTAAAGTTGGCTCTTTAAAAAAATTATCATAATACATCAAAGCGGTTTGAATTAAAATATTTGTTCACTTAAAATTACAAATTAGATATGCTAACCATCTTCTGTATTTTCTGAACTTTCTTTCAATTTTAATTT-------AAGTCACTGTATTTATTAAATTTAGTTCTACTCACTTTCAATTTTTCA---AAACCTTTTTTTCCCGT-------C
s caePb3.Scfld02_0      1811301 262 +  4147112 gtgaaacactgaaaatcgttagaaa------------tcggaaaaatttcaaaaattgcgaaCAATTA----------------CTATAAAATTACATAACTCGAC----------------------------AACTTTTAATGAGACAACGATGTGTTTTCAGTAAAAGT-CCTGCCTGCCCTGAAGTATGCtttaaa----------attcttttttttttcaatcttttttgtttattctattttcccgccaaaattggtccctttctcaagtt---ttttatacaatctcagtttttcaggCAAATAATTTATGTCCATTCGTGTac
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   637263 545 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=23675.000000
s ce10.chrX             3387033 432 + 17718866 AGGTTCAAAAAGTGT-AGATTAAAATT-TAAATCCTTTCTCATACTTGTAATCCGATCATAATATATGTTTG-------------GTCAGGATGTGTAGTCACAATTT----AACAGT-----TTTTAAGCACaaataaaattgtaaatttaataattaaaaaaGAAAGGTTTCAAATGAAAGCAAAAAAAAATCATATTTG-----------------GAACTAAATAAAATAGCTAATTAATTATAATGCAGATGCCCAGCCAAAGTGCTGAGCGCCACTTGAAAATCACAGCAGATGGTAGTACAATGGAAGAGATGTGTGTTCCGTGTGAAGGTCTGATGTTCTTGAAATAAATAGTTGAGAATTTTGAAATAAACACGAGCGTTGTACGACAAGAGTGTAA-------ATTTTGCACTAAAAATGAT-----TAAAAATAAAGAAATTCTG-----ATAACCTCTCGTTATCATTCCGACACACC
s caeSp111.Scaffold629   637808 433 - 33334924 aagttcaaaaagtatCGGATTATACTCACAAATCCT---ACACATGTGTGAACCGATTACCACacacatttt----aaaaatctggTTAGGATGTGTGGTCAAACGTTCTCAAACAGGAAGTATCTCAATTAACACTGGAGTACAAtcttcattca--gaaaaaaaacaaat--aaatgcaa--aaaggaaaatcaaaCAGA------GCAAATCTGCAGAACTCCATAAATGAGTTAATTACAT---ATGCAGCTGCA---TCATAA-TCGAAGAAGCACTTGAAAATCACAGCAGATG----------GGAAGAA----GTGTCGAGagtgaaaagatgaaat--ctgaaataaacaattgagaa---taaaaaatagacgAGCAGTGA----CCTCACTGTCTTTTGTGatgtcaaaaatagaaaattcatttctgtaaaaagagaaatttca-----gaaa---cacGTTATCACACTGACACACC
i caeSp111.Scaffold629  I 545 I 372
s caePb3.Scfld02_0      1811563 440 +  4147112 aagttcaaaaagtatCCGATTACAGTCACAAATCCT---CTAGATGTGTGAACCGATTACCACACacattcggaaaaaaaatctggttaGGATGTGTGGTCAAACGTTTTCAAACAGGAAGTGT----ATTAAAAATAAAGTACATAAGttatttattgaataaaaaaaagt-----tgaat--aagtAAAAACCACATAAACGAACCATAAAATGAAGGAACTTTATAAATGAGCTAATTAGAT---ATGCAGCTGCAC--CCAGAA-GTGAAGAAGTACTTGAAAATCAAAGCAGATG----------GAGAGAA----GTGTTCCGTGTGAAAAGATGAAA---CTAAAATGAACAGTTTATAA---AATTAAAGGGAAGAATGATGGTGGTCAAAATTGTCT-------AGTtgataaaaaaagttatatttataacaaaacacaaatttcaatttcacaa---ttCGTTATCTATTCCACACACC
i caePb3.Scfld02_0      C 0 I 431
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=0.000000
s ce10.chrX             3387465 1271 + 17718866  
e caePb3.Scfld02_0      1812003  431 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeSp111.Scaffold629   638241  372 - 33334924 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=297.000000
s ce10.chrX             3388736 63 + 17718866 GTTGACACCGTTTTTGGTCGCACGAACAGTTTTGA--AAATTCTATTTGAATTTTTTACGAATCT
s caeSp111.Scaffold629   638613 52 - 33334924 GCtgactgtttttttgttcgaaaaattgggTTTAATTGAAtcctatttcaaa-------------
i caeSp111.Scaffold629  I 372 C 0
e caePb3.Scfld02_0      1812003 431 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=957.000000
s ce10.chrX             3388799 46 + 17718866 ATTTTATTTTGTATGTGATCTAC--AAT--CGGTGAAACCTTGTGACAGT---
s caeSp111.Scaffold629   638665 34 - 33334924 -----attttgaatgcgATCTACACAGT--------------GTTTTAGTTTA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1812434 49 +  4147112 ATCTGATTTTGTCGGTGATCTACTAAATTTCGACAAAA----GTTTCAGTCTG
i caePb3.Scfld02_0      I 431 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8466111 2714 + 21540570 I
e caeRem4.Crem_Contig0   520301 1483 -  4500979 I

a score=-4906.000000
s ce10.chrX             3388845  912 + 17718866  
s cb4.chrX              8468825  891 + 21540570  
i cb4.chrX              I 2714 C 0
s caeRem4.Crem_Contig0   521784  967 -  4500979  
i caeRem4.Crem_Contig0  I 1483 C 0
s caeSp111.Scaffold629   638699  901 - 33334924  
i caeSp111.Scaffold629  C 0 I 143
s caePb3.Scfld02_0      1812483 1041 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I

a score=-12764.000000
s ce10.chrX             3389757  95 + 17718866 ---------TGGCAATACTTTTTAATCCCGTTTTTTTGTAGTT--TTGTTCTATCAA-------GAA---------------AGCTATATATTT--CTTTTTAGACTTGTG--TACGTGTTTTTAAATC-----------TTT--
s cb4.chrX              8469716  85 + 21540570 ---------AGTCAAAATTCGA------TGTTCATTTGAACTT--TTGTAT-------------AAA---------------GATCAAGTC---------ATAAAAAAGTC--AGTTTGTTTTATAGTaaa---actct-ttttt
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   522751 109 -  4500979 ---------TATCTATATATAT------CATTACTTCTGATTTAATTTCAT-------------AGATCATAAAGTCACGTTGACTAAATCCTT--TTTTATAgaga------aatttgttttcaaatcaacTGATCCtgttttt
i caeRem4.Crem_Contig0  C 0 I 24
s caePb3.Scfld02_0      1813524 105 +  4147112 TCGAACATGTAGTAGAACatat------cacatttttgaaatt--tcacattttaAACGTTTCCAAA---------------GATCACATATTCCATTTTATGACTA-GCCAAAGTATGTTTTCAAGTC----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e caeSp111.Scaffold629   639600 143 - 33334924 I

a score=-676.000000
s ce10.chrX             3389852 11 + 17718866 AAAACATTAAA
s cb4.chrX              8469805 11 + 21540570 caaaatttaaa
i cb4.chrX              I 4 I 33
s caePb3.Scfld02_0      1813629  7 +  4147112 CAGTAAT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e caeSp111.Scaffold629   639600 143 - 33334924 I
e caeRem4.Crem_Contig0   522860 24 -  4500979 I

a score=-1189.000000
s ce10.chrX             3389863 18 + 17718866 CAAATAAACTAA-----AATGCA
s caePb3.Scfld02_0      1813636 23 +  4147112 CCTGTGTTCGAATTGTTGTCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8469816 33 + 21540570 I
e caeSp111.Scaffold629   639600 143 - 33334924 I
e caeRem4.Crem_Contig0   522860 24 -  4500979 I

a score=38.000000
s ce10.chrX             3389881 1 + 17718866 C
s caeRem4.Crem_Contig0   522884 1 -  4500979 C
i caeRem4.Crem_Contig0  I 24 C 0
s caePb3.Scfld02_0      1813659 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8469816 33 + 21540570 I
e caeSp111.Scaffold629   639600 143 - 33334924 I

a score=3932.000000
s ce10.chrX             3389882 50 + 17718866 AAAAAAATGAGCAAAATGTGTTGTCTATT--TACATGTCTTCTCCGTTT----TAT-------
s cb4.chrX              8469849 49 + 21540570 AAAAAAGCGATTAAAACTTGGTCTCGTTTGGTATTCATC--------------TCTATCTATG
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   522885 61 -  4500979 CCAAAAACCATTAAAACTTGGTCTCTTTC--TATTCGTCTTCCTCATTCGTTTTCTGTCTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1813660 52 +  4147112 ATAAAAACCATTAAAACTTGGTCTCTTCTCAACTATGTCTTTCTCGTTC----TCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e caeSp111.Scaffold629   639600 143 - 33334924 I

a score=-21748.000000
s ce10.chrX             3389932 519 + 17718866  
s cb4.chrX              8469898 516 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   522946 536 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   639743 514 - 33334924  
i caeSp111.Scaffold629  I 143 I 6
s caePb3.Scfld02_0      1813712 473 +  4147112  
i caePb3.Scfld02_0      C 0 I 49
e caeJap4.Scaffold18194  582223 4247 -   823664 I

a score=904.000000
s ce10.chrX             3390451 5 + 17718866 TCAAT
s cb4.chrX              8470414 5 + 21540570 ACAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   523482 5 -  4500979 TTGGT
i caeRem4.Crem_Contig0  C 0 I 64
s caeSp111.Scaffold629   640263 5 - 33334924 TCAAT
i caeSp111.Scaffold629  I 6 C 0
e caePb3.Scfld02_0      1814185 49 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I

a score=-991.000000
s ce10.chrX             3390456 9 + 17718866 TTATACTCA--
s cb4.chrX              8470419 9 + 21540570 TTACTGTAA--
i cb4.chrX              C 0 I 107
s caeSp111.Scaffold629   640268 9 - 33334924 --TCAATAATG
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1814185 49 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e caeRem4.Crem_Contig0   523487 64 -  4500979 I

a score=-155.000000
s ce10.chrX             3390465 32 + 17718866 CAGTACAC----ACACAGT-------ACACTCACAGTAGGAGT
s caeSp111.Scaffold629   640277 43 - 33334924 TAATACACTTGGATACTATGAGGGAAACACACTGAACATGTGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1814185 49 +  4147112 I
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8470428 107 + 21540570 I
e caeRem4.Crem_Contig0   523487 64 -  4500979 I

a score=45.000000
s ce10.chrX             3390497 12 + 17718866 -CCAATTAAGCAA
s caeSp111.Scaffold629   640320 13 - 33334924 GCTGATAAACTAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1814234 13 +  4147112 CCAATTCAATCAT
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8470428 107 + 21540570 I
e caeRem4.Crem_Contig0   523487 64 -  4500979 I

a score=-15022.000000
s ce10.chrX             3390509 91 + 17718866 -----CTGTACAAACACTTTTTTGGCTTGAGG----AACTAACTTCTTAATT------------TCCGTATGTCTGTAGAATTTGtaaaattttatatttaa------aaaacaatat---
s caeRem4.Crem_Contig0   523551 98 -  4500979 -----ttgaataaaaatttt----atttgata----aaaaa--gtcAGAATATGAACAAGTTATTTCCAGtcaattcgaaaattct--gatttaCTATACAA------CAAATAAACCAAA
i caeRem4.Crem_Contig0  I 64 C 0
s caeSp111.Scaffold629   640333 70 - 33334924 CAATATTTTGTGAATATT-C----ATTCGAAA----GCCAA--TTCACAATG------------CCCGTATCACTATAAAAA--------------------------CATACAGGGCA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1814247 97 +  4147112 CCGTAGCACCTGATTATTAT----GTGTGAAACATGACCTG--TTCTGTTTg-------atttcctccttttcttctggaaat------gttttttctaaaactttttcataaa---ca--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I
e cb4.chrX              8470428 107 + 21540570 I

a score=-2313.000000
s ce10.chrX             3390600 240 + 17718866 ttCATTCGAATATTTTTTGATATTTACAAATAAGACTTAATATTCTGGGATTATC---------AGATATCCTATTC------ACATTTCCGCTTGT----------CACAAGGTTCATGCTTACGGAACAGATG-TACG-TAACACACCGTGGCTTTCAGAGAAAAAGTAAACATAAAAGGTTC----TTTTC--TGTTTTCT--------CGG---------AGACA-------TCATATCGTTTCTTTTTTTCTGCTTTCTTTT---GTTAGCTGTCTATATGTTGAATCTT--TT-ATC
s cb4.chrX              8470535 245 + 21540570 TTAACTTGAATACCtttttttA-----GATCAACACTTGA--ATCCAACTTTGACGCTAG----AAGCTTCCTTTCA----Caatcttttttctcgt--------tttttcctattcaatcagc---aacatttt-tttgttattagaACGTGGCATT------GAAAATCAAcataaaacgttt----tttcttgccattttc--------attgaattcaaCCAACACAATCACCCTATGTATTCATCGTTT--TATTTTCGTTTTGCTT----------TGTTTGAAATCTCAGAC-ATC
i cb4.chrX              I 107 C 0
s caeRem4.Crem_Contig0   523649 227 -  4500979 TCAATTTGAATACTT-------------------GATTGA--TTTTAATATTGACgtctgttctatattttctttcaattttccttttttccctcGTGACGCGTCTTCTCGCAATTCAATCAGATCGAACATTTCGTTTGTTGTTAGAACGTGGCAAC------GAAAATCAACATTAAAGgttc----ctttt--ctattttt--------ctt---------tgacA-------TCTATGCGTTcgcttttt--ccatttcatt----gt----------TGCCTCAATTCTC--GT-ATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   640403 202 - 33334924 -----ATGAATCCTTTTGt---------------gtttga---------------------------tttctttttt----cctcctgTTTCCTTACGTCAGATTTCCATAAAATTCAATCAGATGGAACACGTA-TATGTTAGGAAAACGTGGCATC------GATTATCAACATACAAGGGTTGTgaatttt--cccttttttg------cgT---------TGACA-------TCACTgcattcac-tttt--tgatttctttt---gt----------tatGGCGATTCTT--GC-ATT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1814344 191 +  4147112 -----tcgaagccttt---------------------------------------------------cttccttttc----aatctttttcattttc--tatattttgaaacaaatcaatC-------ACACGTT-TCTATTGACAATACGTGGCATC------GATTATCAACATAAAAGGGTC-TGATTTCC--CTCTTTTTCGTTGACACGT---------TGACA-------TGAAtacattcacttttt--tgctttctttt---gt----------TGTGTCAAATCTC--TCAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  582223 4247 -   823664 I

a score=94035.000000
s ce10.chrX             3390840 239 + 17718866 GAAAATGATGGCAAAGTGATA--------TAT---CCTATCGAAAC-GGCGAGTCG---TTGCTGATTTCGGACACGTTCAAAGTGGAAGG--ACACTT-----GCGGCCA-GA-----AACTTATG------------CAAAACGTCATTTGG--------AATGTGTAATGGACAT--------CTTCTTCTC------------T-----CGCTCACACGACAT-CCGGACCGATAGCATGC----TTTTTGAAAT-----CGAATATGGTTGAGAAAG--GAGACATTTTACCATCTGGCTTTGCTTAT-------TCGTTCT---TTCT--
s cb4.chrX              8470780 244 + 21540570 GAAAGTGATAGAAATGTGATAAATCTCTCTTT---TCCATCAA-----GTAAG----------------------CGTTCAAA--AGG-----ACA-TTAGCCACCGCCAG-GAAAGCGAACTTATG------------CAAAACGTCATTTGA--------AATGTGTAATGGACAT--------CTTCCTTct-cctctctctttt-----ctcgCACATGACAT-CCGT-CCAAC-----GCACATTTCTTGAAAT-----CGAATATGGTtgagaaaa-tgagacattCTACCATCTGGTTTTGCttatatttttctcttctt---tat---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   523876 229 -  4500979 GTTAGGGATGACAAAATGATA----------T---CCCATCGAAAC-GGTAAGT---------TGATTTCGAATACGTTCTGA--TGA-----ACA-TT-----CTGACCA-GA-----AACTTATA------------CAAAACGTCATTTAG--------AATGTCTAATGGACAT--------CTTCATACG--ATGTCTCTCGC-----CGCTCACATGACATGCGGG-CCAAT-----GC----TTCTTGAAAT-----CGAATATGGTTGAGAAAG--GAGACATTTTACCATCTGGTTTTGCTTAT-------TTCTGCT---CAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   640605 236 - 33334924 GAAAGTGATGGAGAAGTGATA----------T---CCCATC-AAAC-GGTGAGTCG-----ACTGATTTCGGACACGTTCAGA--TGAAGG--ACA-TT-----GCGGGCA-AA-----AACTTATG------------CTAAACGTCATTTGG--------AATGTGTAATGGACAT--------CTTCTTTTGgcgtctctttctc--tctcgcTCACACGACAT-CCG------------GC----TTCTTGAAAT-----CGAATATGGTTGAGAAAG--GAGACATTTTACCATCTGGTTTTgcttat-------ttctttttgatgt---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1814535 244 +  4147112 GAAAGTGATGGAGAAGTGATA----------T---CCCATTGAAAC-GGTGAGTCG-----ACTGATTTCGGA------CTGT--GGAAGGACACA-TT-----GCGGCCAGAA-----AACTTATG------------CTAAACGTCATTTGG--------AATGTGTAATGGACAT--------CTTCTTTAGGcgtttctctcttcatctcgCTCACATGGCAT-CCGG-GCAATAGCATGC----TTCTTGAAAT-----CGAATATGGTTGAGAAAG--GAGACATCCTACCATCTGGTTTTGCTTAT-------TTCTTCT---GTT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  586470 271 -   823664 GAAAGTGATGGCAAAACGATA----------TGTGACCATTGAAATGGGTGAGTCCATTTAAGTGATATCGGC------------AGG-----ACA-CC-----GCCACCG-AT-----AACTTATGCgaaaaacgaaacgaaacatCATTTCGTTTAAACTAATGGAAAATAGACCTTGAATTCCCTCCTTCACTCATATCTCTCTC--------TCGCATGTCAT-TCGACCAGATCGCATGT----AGCTTGAAATGAAACCAAATAtggttgagaaaaaaaaggcatT-TACCATTT-ATTTGGcccct-------ttctccc---ttt-ct
i caeJap4.Scaffold18194 I 4247 I 2054

a score=10024.000000
s ce10.chrX             3391079 199 + 17718866 AATAGCTCATTGGATTTAAACATTCGCTTTTCAT---------T---TTCAAATCCTAAACTTTTTGCAAAATTT----C-GTTTTGTTTGAATTGAGACTT-----TTGCTTACCCCGGTGAACAAGGATTGCACATGTGCT--CACTTTTCCACG-----TTTTGCG-----AGCT-CACCGGAAGTGGCAAGTGCAATTTCCTTTAGCTG-CGTTCGTTC----ACTTTTTGAC--AA---------------------------------------
s cb4.chrX              8471024 213 + 21540570 -----CCCATC--ATTTTCATCCCCACTTCTCGTCTAATTTTGT--CCCCAAATCCT-----TTGCACAAGTTTG--CAC-ATTTTGTTTGGATTGAGAGAGGGTGAACTGCTATACCGGT---CAAACACT---CGCATGCTCTTCCATTTTGCCATCCATTTTTGCAAAGAGAGCTCCACCGGAAGTTCA----------------------ATTtccttttgatatttttttggacTAT--GTTCGTTTC-------------------TTGGAAA-
i cb4.chrX              C 0 I 1511
s caeRem4.Crem_Contig0   524105 219 -  4500979 -----CTCATC------------------CTCTTCTAATTTTGTTGCTCAAAATCCTCGAAATCCCAAAAGTTTGCACAC-ACTTTGTTTGAATTGAGAACT------CTGTTTCGCCGGT---CAACGATTGCACATATGCTTCCCCATTTTGCCA-----TTTTGCAGAGA-AGCT-CACCGGAAATTCGAAGTgcaattttctccatttctacttcctctcgttacttttttag--tgt--gttcgtttcttc------------ttttttg-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   640841 203 - 33334924 ----gCTCATC-------------CACTTCTCA-CTAATTCTGT---TCTCAAT------ATCCCTCAAAGTTTG--CACTGCTTTGTTTGAATTGAGAACC-----CTGCTTTCACCGGT---CACCAATTGCACAAATTCT--CCCTTTTTTGCC----ATTTTGCA-----AAC-CTACCGGAAGTGCA-------GTTCCcttcatttt-cgttttccccGCCACTTTTTTAG--TGT--GTTCgctcttct------------cttttcg----t
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1814779 213 +  4147112 ----GCTCAT------------------------CTAATTCTGT---TCTCAATTCTTGAAATCCTCAAAACTTG--CAC-GCtttgtttgatttgaaaaac-----tctgcTACACCGGT---CAACAATTGCACATATGCT--CTCATTTCGCCA----TTTTTGCA-----AACTCTACCGGAAGTGCA-------GTTTCCTTCATTTG-CCTTCTCCTTCTGACTTTTTTAG--TGTACGTTCGTTCTCCTTCCTCGTTCCCCTTTCTCG----C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  586741 2054 -   823664 I

a score=18634.000000
s ce10.chrX             3391278 120 + 17718866 AAAAAACTAATCGACTTT-TTCCTACTTTCA------AAGTTTTCTT-----ATTTTGTTTTTCAGTTTTCTCTCTCGCG---AAGAAGCAAAATGA---AGCCGATTC-----AATCTCATTTTATT---------TAGGAAATTGAAATC
s caeRem4.Crem_Contig0   524324 134 -  4500979 tgaaaactcaTCAACTTTGTTCCAATTTCCC------CATTTATCCT-----------TTCCTAACTTTCGTTTAGCGAGTGCGAAA-ATAGAGCAGTTTAgcctttttttctgaatctcattttgttttttttttacggGAAATTGAAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   641044 140 - 33334924 ---aAACTCATCAACTTTGTTCCAATTTTCCGCATG-CGctcctctt-ttttatcctttttttcacattcttTTAGGGAgtgcaaaaaataaaacaattcattcttttc-----aatctctttttctacttt--ggataggaaattgaaatc
i caeSp111.Scaffold629  C 0 I 35
s caePb3.Scfld02_0      1814992 147 +  4147112 --AAAACTCATCAactttgttccaattttccgtATGCCGCtttttttatctcattcttttttccaaactcttTGAGTGAGTGCAAAATGTGAAACAATTTAGCATTTTC---TAAATCGTTTTCCCTCTTTTAAGgataggaaattgaaatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I

a score=-2623.000000
s ce10.chrX             3391398 31 + 17718866 TTGAAAACAAAACCTTTCGAAAACTTCAAAG-----------------------------------------
s caeRem4.Crem_Contig0   524458 52 -  4500979 --------------------AAGCTCCGAaaccttttctttttatccaaaaaaacaacagaaactCATTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1815139 11 +  4147112 --------------------aagCTTTAAAG-----------------------------------------
i caePb3.Scfld02_0      C 0 I 19
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeSp111.Scaffold629   641184 35 - 33334924 I

a score=-5222.000000
s ce10.chrX             3391429 224 + 17718866 -TATTTCTCAT--CGAATTTGAAAAATTCACCGCCCACATTTTAAAATTATT------TTCAGCCACAACTTTTACTTTTCCTAAATG-ATATTCTACGTATCCTACTTGAAGTA-------TA--------AAAGTATCCCTTCAGGC-------------GATAC--TATGAGCTTTTCCTACCCAAAGAACTAAATACAC-TCTGTCAATTCATCTCTT--CAAAAGTACGTTCTCTTA----CTCGTACATAATTTGTAAATGCA------TT
s caeRem4.Crem_Contig0   524510 232 -  4500979 -CATTTCT-----CCTTTTC----------CCGCCCAAATTCTACGTTCGTGTCTCAAATTGTTTA-TAATTGttggtttc--------ttttcttctctggaACACACACAATATCTTTAGTA--------GACGTAACCCCCCAGGCATAGACACATTGCGatactttttcgtttttatatCTGC-AAGAATGAAATGCACTTC-----ATCCATCTTTTCTTGAGAGTACTCTTCACTACTCTTCAGTACACAATTTGTGAATGAA----TT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   641219 216 - 33334924 TAATTTTCA----CCAATTC----------CCGCCCAcaacctttttttttg----aatttgtttatttcttGTTAGTCCC--AAGTCTCTCTATTCGTTGGAACACTTGAAATA--TGTATTG--------AAGATA--CCCTAAGGCTC---TATCTCACTAtac-ttttcatctttttgtttg--aagACTGAAATGCAC-CC----------TCTATTCCTTTGAAGACTTTCTTCT------TTGTGCATAA--TTTGAATATACATT----
i caeSp111.Scaffold629  I 35 I 63
s caePb3.Scfld02_0      1815169 216 +  4147112 CAATTTCCCAAATCGGATTC----------CCGCCCAcaacatatttttgtt------tttgtttactATTTCCAACTCTC--AAGTATATCCGTTAGCTTGAACACTTGAAAAA--TGCAGTAGATACCCCGAGATA--CCCCTAGGC------ATCCTACGATAC--TATAgtcttttc-------aagaa-aaagtgcACATC----------TCTATT-TTATAAGCATTTTCTTCCA----GTAGTACACAAGTTCTGAATGCA--------
i caePb3.Scfld02_0      I 19 C 0
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I

a score=-1775.000000
s ce10.chrX             3391653 141 + 17718866 TTTCCTTCATTTTTCA-----CTTTTTT--TCCGTTGCTCCATTATTCATTAGAATTTGTTTGCGTTCTTTGCTTTCTCCGGCTTCAATCATAGTTCTTGCTCAAACTTTTCAAACATTTTGAAATAGGCAGAAAAAAAAAGAAAAAA----------------
s caeRem4.Crem_Contig0   524742 105 -  4500979 ----------TCATCCGAGCTCTTTTTTCATCTGCTTTTCCATTATTCATCAGTACGCGTTCTACTCCTTTAACTTggc-------------atttca-----aaacttctcatTTCTT-----------------AAAAAGAAAACGTG--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1815385 122 +  4147112 -TTCGTAAATTTctcggagttttttttt--tgcgctGTTCAAtaattcatcaaaatgttctc----CGTTTTACTTGTC-------------AGTTTG-----AAAACGTACGTTTCTC-----------------ATTTCGAAAacgctttttttcaatcgca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeSp111.Scaffold629   641435  63 - 33334924 I

a score=23756.000000
s ce10.chrX             3391794  93 + 17718866 -------------------------CAATGTTTAGATTCGCCGTGTTGTTTAGAAA--TTCCTACGACACG-----GGAAACTAGACAACATGGACATAATTTAAGCATAAATGTGTTTTGCTCT
s caeRem4.Crem_Contig0   524847 119 -  4500979 CAGTTTTTCCTCGTTTAGTCCcacacattttttgtgttatgCATTTCACTTAGAAAA-TTCCTACGAGAGA-----AGCCACCAGACAACAATCACATAAATTGTTTATGAAAGTGTTTTGCTCT
i caeRem4.Crem_Contig0  C 0 I 382
s caeSp111.Scaffold629   641498  99 - 33334924 -------------------------cattttttgtgtttagCATCTCATTTAACAAA-TTCTTACGACAAAAAGCCAGCCACCAGACAACAATCACATAAATTGTTTATGAAAGTGTTTTGCTCT
i caeSp111.Scaffold629  I 63 C 0
s caePb3.Scfld02_0      1815507  99 +  4147112 -------------------------CGTTTTTCGTGTTAGGCGTCtccttaaaaaaatttcttacgAT-GAAAGCTAGCCACCAGACAACAATCACATAAATTGTTTATGAAAGTGTTTTGCTCT
i caePb3.Scfld02_0      C 0 I 1056
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I

a score=100.000000
s ce10.chrX             3391887 1 + 17718866 C
s caeSp111.Scaffold629   641597 1 - 33334924 C
i caeSp111.Scaffold629  C 0 I 960
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeRem4.Crem_Contig0   524966 382 -  4500979 I

a score=0.000000
s ce10.chrX             3391888 747 + 17718866  
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeSp111.Scaffold629   641598 960 - 33334924 I
e caeRem4.Crem_Contig0   524966 382 -  4500979 I

a score=7058.000000
s ce10.chrX             3392635 362 + 17718866 TTTCTCATTGTTCTCATCCTTATCTGAAAC-----ATCATGTCAGCAAATAAGGAG----CTGTGCTCCCAAAAATGCATGACTCTTCTCTCATCCTTCTCTTATTTTGTCTCACTATTATTCAGCCGACGTTGGCTCTC-AAATGAAATGCTTCGAACCAAAAATACTTAACAGTGAGAGTTAGAGCACTGACCACTACT---AGTAATTTTTGACTCGTGCGCTACATACA--CATCCACTTTGGCTGAACGATTTTTTTCTCGCCGACTTCAAGGT------------TTTGCAAGGAAAATAGAGTAAATATCGTATAATTTCCTATTCAGCTGAGTCAATAACATTTTTCCAGCTATTTTG------AAAGTTTTCTT--TTCCAAACTTCC
s caeRem4.Crem_Contig0   525348 369 -  4500979 ttttttgctttttttatc-TCATCTGAAACCTCGAATCATGTTGTCAAGAAATGAGAGGTCCATGCTCC-AAAAATGCATgactccttttt--tcttcctctcatTTTGT-TCTCTGTCAA-CAGCTTTTCTGGTCCTTCTAAATGAAAAGCC---GACCGAAAATACTTACCACGAGGAGAGATAGAAGTGACCACTACTTGGCGTAATTTTT------TGGGGTACATTTTTTCAACCACTTTGACTGAACGATTTTTCTATGGCGGAAGTCCTGGtggttttgttttgttttcaa-------aaagtcaacatTGCATAATTAGC--ATCTGTACAAACATTAATAGTTTT----CTATATTGgacacaaaactttttttgattccaagttttc
i caeRem4.Crem_Contig0  I 382 I 246
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeSp111.Scaffold629   641598 960 - 33334924 I

a score=0.000000
s ce10.chrX             3392997 567 + 17718866  
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e cb4.chrX              8471237 1511 + 21540570 I
e caeSp111.Scaffold629   641598 960 - 33334924 I
e caeRem4.Crem_Contig0   525717 246 -  4500979 I

a score=994.000000
s ce10.chrX             3393564 64 + 17718866 CATAAACAAAT------CTTTTTTTAGCCGGTAC--TACACTTTTTTCAGTAACTTTTTAGAACTCCTCAAT
s cb4.chrX              8472748 72 + 21540570 CATAGATGAATTTCCTGCTCGTTTTATGTCGTAcgtcacaattttttgagaaacttaTCTTCacattccagt
i cb4.chrX              I 1511 C 0
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e caeSp111.Scaffold629   641598 960 - 33334924 I
e caeRem4.Crem_Contig0   525717 246 -  4500979 I

a score=-1478.000000
s ce10.chrX             3393628 74 + 17718866 TTTGTTCAAAATATACCCTCATGAAAAGCTTTCTCGATTT------------TTCTTTGGTGTGCAGCAC----CCATGCACCCATCTGG
s cb4.chrX              8472820 76 + 21540570 -ttttt---gatgCACTC------ATTCTGTTCTCATCtcatttcaaattcatttgTTGATGGAGTGGCC----CCGCACTAACTTTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   525963 83 -  4500979 ttttttcaaaatatgttc------AAATTGTTCTAGTTTT-TCTAAACAGCATTGGTCTGTGTATTGGTCGGGTCCCTCCATACATTCAC
i caeRem4.Crem_Contig0  I 246 C 0
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I
e caeSp111.Scaffold629   641598 960 - 33334924 I

a score=1466.000000
s ce10.chrX             3393702 6 + 17718866 CTCTCA
s cb4.chrX              8472896 6 + 21540570 CATTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   526046 6 -  4500979 Cattcg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   642558 6 - 33334924 CCCTCA
i caeSp111.Scaffold629  I 960 I 1
e caePb3.Scfld02_0      1815606 1056 +  4147112 I
e caeJap4.Scaffold18194  586741 2054 -   823664 I

a score=16378.000000
s ce10.chrX             3393708 73 + 17718866 TTTTGTTTATTTCTCTTGCAGAGAACA--------------CTTCTTCTC-GGTCCATCTGCACCCGAGTTTGTTCACAAACATTTCC
s cb4.chrX              8472902 73 + 21540570 TTTTGTTTACTTctctt----cgaattttgaaacactCCTCCCGATTTTG-CGTACACCTGAACCCCA----------CATCAATTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   526052 71 -  4500979 ttttgtttctttccctT--GATGAACATTGAAACACT----TTGCTTCTC-CGTCCACCTGAACCCCT----------CATCGATTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   642565 71 - 33334924 TTTTGTTTATTTCACTGTTTGAGAACATTGAAACACC----TCTTCTCTC-CGTCCACATGCACCTCT------------TCATTCTC
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1816662 71 +  4147112 ttttgtttatttctctCCCAACGAACAGtgaaacaca----ttttctttCTCGTCCACATGCACCTCT------------TC-CTCCC
i caePb3.Scfld02_0      I 1056 C 0
e caeJap4.Scaffold18194  586741 2054 -   823664 I

a score=58559.000000
s ce10.chrX             3393781 189 + 17718866 AG---TTCCCCTTTCTTTG------TGTTTCTCGTTCCCC-------------------------------------CTTGATT-GCTTTT---------CAAAACTTTTCAATTTACTATCAGATGTTCACACTTCTCACTCGAGGGATCCCGTCTCTAAAAACTCGTGGTTACTTCAAAGCTAGATATCAAACCGGGTCAGATGTCTATGAATC---ACTGGTAAGTTTTGAATCCCCCATATTTA----
s cb4.chrX              8472975 183 + 21540570 AT-------CCATTCTTca----attgttatttttccttctcttt-aA-------------------------TT--CTTATGA-TCCTATCATCC----CAAACCT---------AATCTCAGATGTTCGCACTTCTCACACGAGGGATACCATCTTTGAAAAAGCATCgatatttcaaagaaaaatatcaaaatagtTCAGATGGCTATGAATCATTATTGGTAAGT------------ACTTCTa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   526123 219 -  4500979 TTCATATCACCATTCTCCG------TGttattttttcctctcttt-catctcttaatctcttttgttattcattt--cctgttt-tcttattgttctcCACAAGTTTCTC-GA---AATCTCAGATGTTCACACTTCTCACTCGAGGGATACCATCTCTGAAAACTCGTGGTTTTCTTAAAGTCAAATATCCGGGTAGTTCAGATGTCTATGAATC---ACTGGTGAGT------------ACATTGA----
i caeRem4.Crem_Contig0  C 0 I 119
s caeSp111.Scaffold629   642636 218 - 33334924 CT---ATCACTCTCTTCCATTcaa-tgttattttttgtccGAT---CATCTTCTAATCTC-TTTGTTATTAATT--Tcctgtttctctctttgttc----CACATTTCCT-GA---ATTCTCAGATGTTCACACTTCTCACTCGAGGGCTACCATCTCTTAAAACTCGTGGTTTTCCCAAAGTCAAATATCCGGGTAATTCAGATGGATACGAACCATTATTGGTGAGT------------AGTTGAC----
i caeSp111.Scaffold629  C 0 I 21
s caePb3.Scfld02_0      1816733 224 +  4147112 GT---ATCACTCTCTTCCACacaattgttgttttttccacCTTTTCCATCTTCTAATCGC-TTCGTTGATAATTTATcctgttt-tcttcttgttc----cacAATTCATCAA---ATCCTCAGATGTTCACACTTCTCACTCGAGGGATACCATCTTTAAAAACTCGTGCCTTTCCCAAATTCAAATATCCGGGTAGTTCAGATGGCTATGAACCATTATTGGTGAGT------------ACCTgaa----
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold18194  588795 178 -   823664 -----agttcaaTTGTTtc------tgttcttttcttttctat----------------------------------tcAATTA-AACTA----------CCAACCACCT------GTATTCAGATGTTCACCCTTCTCAGTCGAGGGATACCGGCGTTAAAAACTCGAACATTCTTCAAAGACAAGTATCTGGGCAACAATGACGTTTATGATCAATTACTGGTAAgt------------agaaatgtttt
i caeJap4.Scaffold18194 I 2054 C 0

a score=-10590.000000
s ce10.chrX             3393970 31 + 17718866 -------ATGGTCAATATGAAAACACGGATA----GTAAAAC
s cb4.chrX              8473158 19 + 21540570 -----------------aggtca-aaaatca----ataaaa-
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629   642875 33 - 33334924 -------CCTATctatgagaaaa-acaattgaaatatgAAC-
i caeSp111.Scaffold629  I 21 C 0
s caePb3.Scfld02_0      1816978 30 +  4147112 -------AGTGTTATTGCGATAA-GAGagta----atgaaac
i caePb3.Scfld02_0      I 21 I 39
s caeJap4.Scaffold18194  588973 29 -   823664 ttgttcggACCTCACGGCCATGA-AAAAAC------------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   526342 119 -  4500979 I

a score=-6230.000000
s ce10.chrX             3394001 36 + 17718866 --TTGAGGGCAT--GTACGTAGTTC---GTCATGAATTTTTAT
s cb4.chrX              8473178 16 + 21540570 --ttgcaACAATTTGTAC-------------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold629   642908 32 - 33334924 --TTGATGCACTTGATACGTA---------CCCAAACTTTCAT
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  589002 43 -   823664 AGTCCATGCACTTGTTTTGCACCCCAGGGAAAAGAGGGTCTAG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1817008 39 +  4147112 I
e caeRem4.Crem_Contig0   526342 119 -  4500979 I

a score=-7358.000000
s ce10.chrX             3394037 23 + 17718866 TATTTTTTT-----------------------GTCGGTGGTGTAAT--------------
s cb4.chrX              8473194 42 + 21540570 ----TATTGTCGCACTCGAAACCCAAACAACCATGGTTCTTGGCTT--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   642940 20 - 33334924 ---TTGTTA-----------------------ATAGTTTTTGGCTT--------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1817047 23 +  4147112 CATCTTTTA-----------------------ATGGTTTCTGACTT--------------
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18194  589045 26 -   823664 ----------------------------------AGTTCTTTTATTTTAAAGCGACGCAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   526342 119 -  4500979 I

a score=519359.000000
s ce10.chrX             3394060 1148 + 17718866  
s cb4.chrX              8473236 1067 + 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   526461 1177 -  4500979  
i caeRem4.Crem_Contig0  I 119 C 0
s caeSp111.Scaffold629   642960 1167 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1817070 1198 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  589071 1250 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1332.000000
s ce10.chrX             3395208 2 + 17718866 TA
s caeRem4.Crem_Contig0   527638 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   644127 2 - 33334924 TA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1818268 2 +  4147112 tg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  590321 2 -   823664 TA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8474303 5 + 21540570 I

a score=-1927.000000
s ce10.chrX             3395210 2 + 17718866 -AG
s caeRem4.Crem_Contig0   527640 1 -  4500979 -A-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1818270 2 +  4147112 -ag
i caePb3.Scfld02_0      C 0 I 143
s caeJap4.Scaffold18194  590323 1 -   823664 C--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8474303 5 + 21540570 I
e caeSp111.Scaffold629   644129 0 - 33334924 C

a score=-2399.000000
s ce10.chrX             3395212 54 + 17718866 AGATTTGGATTCTTGATGGTTTGATCTAGAGGGAAATAGATACAAAGAACTTTA
s caeRem4.Crem_Contig0   527641 23 -  4500979 -----------------------ATCAAACGACGAATGAGT--------CTTTA
i caeRem4.Crem_Contig0  C 0 I 12
s caeJap4.Scaffold18194  590324 11 -   823664 -----------------------------------ATACCT--------ATTTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1818272 143 +  4147112 I
e cb4.chrX              8474303  5 + 21540570 I
e caeSp111.Scaffold629   644129  0 - 33334924 C

a score=-1070.000000
s ce10.chrX             3395266 44 + 17718866 TATCCATAGTATGCAGTTTGAAAAAAAAAACAGAAAAGACAATC
s caeJap4.Scaffold18194  590335  8 -   823664 CATACATA------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1818272 143 +  4147112 I
e cb4.chrX              8474303  5 + 21540570 I
e caeSp111.Scaffold629   644129  0 - 33334924 C
e caeRem4.Crem_Contig0   527664 12 -  4500979 I

a score=0.000000
s ce10.chrX             3395310 5 + 17718866 TAATT
e caePb3.Scfld02_0      1818272 143 +  4147112 I
e caeJap4.Scaffold18194  590343 0 -   823664 C
e cb4.chrX              8474303 5 + 21540570 I
e caeSp111.Scaffold629   644129 0 - 33334924 C
e caeRem4.Crem_Contig0   527664 12 -  4500979 I

a score=-9059.000000
s ce10.chrX             3395315 88 + 17718866 TGGGTGACAATAATAATTATTTTTTGTAGTTTTTGAAATATAATAGTATAGAAAGTTTGGTATCAGTATCGTTTCTGGAAATTATACC
s cb4.chrX              8474308 29 + 21540570 CAGATAACA----------------ACaagtttttataaaaaatg-------------------------------------------
i cb4.chrX              I 5 I 5
s caeSp111.Scaffold629   644129 33 - 33334924 TGCATGACA--------------Ttatagaatttgaaaaacaatatt-----------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194  590343 18 -   823664 ----------------CACTTTTCCATcttatct------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1818272 143 +  4147112 I
e caeRem4.Crem_Contig0   527664 12 -  4500979 I

a score=402.000000
s ce10.chrX             3395403 12 + 17718866 ATGTTGCATTTT
s caeJap4.Scaffold18194  590361  9 -   823664 ---ttgtttttt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1818272 143 +  4147112 I
e cb4.chrX              8474337  5 + 21540570 I
e caeSp111.Scaffold629   644162  0 - 33334924 C
e caeRem4.Crem_Contig0   527664 12 -  4500979 I

a score=194999.000000
s ce10.chrX             3395415 229 + 17718866 TGCATTTTCAGACAATGTGGGCATGTATGGGAGAACTCGGCGGAATGACAATTTCATTGGATGAATTTTTTGGAACACCAGAACTCTGGCAATGGGCGATGGGATTTCCTCTACTCCTCTTACTCCCGGCTCTCGTCGTCATCTGGCATGCGCCAGAATCTCCAAGATACCTTTTCATTGAGAATCGTGAAGACGAGGCTCGTAAAGCCATGTCGTACTATCAGGTGAG
s cb4.chrX              8474342 220 + 21540570 --------cagACAATGTGGGCTTGCATGGGTGAGCTTGGAGGCATGACAATCTCGTTGGACGACTTTTTTGGGA-TCCAGAGCTCTGGCAATGGGCTATGGGCTTCCcacttcttgttcttctcccCGCACTCTACATCATCTGCCATGCCCCTGAATCTCCCAGATATCTTTTCCTGGAGAATCGTGAAAACGAAGCTAGGAAAGCAATGTCGTACTATCAGGTGAG
i cb4.chrX              I 5 I 9
s caeRem4.Crem_Contig0   527676 225 -  4500979 ----GTTTCAGACGATGTGGGCTTGCATGGGAGAACTTGGAGGGATGACAATCTCATTGGACGAGTTTTTTGGAACTCCGGAGCTCTGGCAATGGGCGATGGGTTTCCCTCTTCTTGTGCTTCTACCAGCTCTATACATTATCTGCCACGCTCCTGAGTCGCCGAGGTATCTGTTTCTGGAGAATCGAGAGAATGAAGCACGGAAAGCGATGTCGTACTATCAGGTGAG
i caeRem4.Crem_Contig0  I 12 I 39
s caeSp111.Scaffold629   644162 224 - 33334924 ----tttatagaCAATGTGGGCATGCATGGGAGAACTGGGTGGAATGACAATATCTCTTGATGACTTCTTTGGAACTCCGGAACGTTGGCAATGGGCAATGGGTTTCCCACTTCTCGTTCTTCTCCCGGCTCTTTACATACTGTATCATGCTCCAGAATCTCCAAGATATCTATTCTTGGAAAATCGAGAGAACGAAGCTCGGAAGTCTATGTCTTATTATCAGGTAA-
i caeSp111.Scaffold629  C 0 I 14
s caePb3.Scfld02_0      1818415 229 +  4147112 AGCGTTTTCAGACAATGTGGGCTTGCATGGGAGAACTTGGTGGTATGACTATATCACTAGAcgagttttttggaactccTGAGCTCTGGCAATGGGCTATGGGCTTCccacttcttgttcttctcccAGCCCTCTACATCATTTGGCAAGCTCCAGAATCTCCAAGATacctatttttggaaaatagagagaacGAAGCTAGAAAAGCAATGTCATATTATCAGGTGAg
i caePb3.Scfld02_0      I 143 I 38
s caeJap4.Scaffold18194  590370 229 -   823664 ttccttttcagaCAATGTGGGCTTGTGTGGGCGAACTGGGAGGTATGACAATTTCACTGGACGAGTTCCTTGGAAATCCTGGCATGTGGCACTGGGCCATGGGCTTTCCACTTTTAGTCCTCCTACCTGCACTTTTAATCATCTGGCATGCACCCGAATCGCCACGATATCTGTTCTTGGAGAACCGTGAGAGTGAAGCACGCAAAGCAATGCTGTACTATCAAGTGAG
i caeJap4.Scaffold18194 C 0 C 0

a score=-1168.000000
s ce10.chrX             3395644 12 + 17718866 CAGTTTGCCAAG
s cb4.chrX              8474571 12 + 21540570 CTGAGCAATGAG
i cb4.chrX              I 9 I 3
s caeSp111.Scaffold629   644400 12 - 33334924 CATTCCTTCGAA
i caeSp111.Scaffold629  I 14 I 1
s caePb3.Scfld02_0      1818682 12 +  4147112 TATGgcatcaaa
i caePb3.Scfld02_0      I 38 I 4
s caeJap4.Scaffold18194  590599  5 -   823664 -------CCCAG
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   527901 39 -  4500979 I

a score=145019.000000
s ce10.chrX             3395656 350 + 17718866 TTCTCATGA---------TGAATAAAC-------AATTTGCAGAGTCCAGCAGATTGTAAACAATCTATCGAGGAGATTTTGCTTGAAAAGCAATTTGTGAGTTTTGGGGAATTGTT----------------TTAA-TGAATTGTTTGAACA---CACT-------------CGGTTTGCAGACTATGGAAATGATCAAAGAAAAAGTCGATGAAAATGGAAATACTAGGAAAAAGGAACCAGCAGGGCTACTGAGCTCAATTTGTGAACGTTTGAAGGTCAGGCAAACAGTCTTGAGCATATTTTTAAAA---GCTTAATTTT-----------AGGATGGAAGGTTCACTCGTGCGCTTCTAATTGCTCTTTTTGTTCAGACATTTGTGCATCTTGATGATTGGGTAAGA
s cb4.chrX              8474586 309 + 21540570 Tcctgaaaa---------cttctgaaaataaacgaTTTTGCAGAGCCCTGCCGATTGTAAACAATCAATCGAAGAGATTCTGATCGAGAAGCAATATGTGAGTTT----GAGTGCTG---------------TTGTA-CTTCGTGTTTAAACATATGTTT---------------TGTTGTAGACATTGCAAATGGTGaaggaaaaaattgatgagAACGGAAACTcgagcaaaaaagagaaagatacCTTGTGGAACACGATTATTGAACGTTTGAAA-----------------------------------------------------------GATGG-AAATTCACCAGAGCGTTGTTAATTGCACTTTTCGTTCAGACGTTTGTGCATCTTGATGACTGGGTAAAA
i cb4.chrX              I 3 I 31
s caeRem4.Crem_Contig0   527940 344 -  4500979 TCCACATAA---------CATACCAGA-------ACTTTGCAGAGCCCTGTGGATTGTAAACAGTCGATTGAAGAAATTCTCATGGAAAAGCAATTTGTGAGTTC-----AGTTTTT---------------AGAGA-GTCAATGTTTGAACA---ACTT---------------TGTTACAGACGTTGCAAATGgtgaaagaaaaagtggatgAGAACGGAAACTCttccaaaaaagagagagatggaTTAGTAACGTCAATAATAGAACGACTTAAAGTGGGTGTGAGGGcactgaacatttttctaaaa---acataaTTAC-----------AGGATGGAAAATTCACACGCGCTCTACTTATCGCTTTAtttgttcaaacttttgttCACCTTGATGATTGGGTagat
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold629   644413 345 - 33334924 ------------------------AAT-------ACATTGCAGAGCCCGGCAGACTGTAAACAATCGTTTGAGGAAATTCTTGTTGAAAAGAATTTCGTAAGTTT-----GGTTTTTAATTCGAATGATTTGTGGAG-AGGACTGTTTGAACA---ACTT-------------GTTTTTGCAGACTCTTCAAATGcagaaggaaaaagtggatgagaatggaaattctagcaaaaaggaaaatgacaGTCTCATTCGCTCAATATTGGAACGCCTAAAG------------gttcgaaatgaattttccagA---TGTCAAGTATATATTTTGTTTAGGATGGAAAATTCACTCGTGCTCTTCTAATTgctctttttgttcaaacATTTGTGCATCTTGATGACTGGGTAAGA
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0      1818698 309 +  4147112 tttttataa------------ataaac-------atttttcagagccCTGCAGATTGTAAACAATCCTTTGAGGAAATTCTCGTCGAAAAGCAATTTGTGAGTTT-----AATCTTC-ATTcgattctttttcgaaatagagatttttgaaca---acct-------------aatttt-cagacaatgcaAATGGttaaagagaaaattgatgaaaatggaaactcaagaaaagagaaa---ggaggaTTGATTGACACAATTTTGGAAAGACTCA-----------------------------------------------------------AGGATGGAAAATTCACTCGTGCTCTTCTCATTGctctttttgttcaaacttttgttCATCTGGATGATTGGGtaagg
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194  590604 379 -   823664 CTGACATGAATAAACAAACACAGAAAA-------GTTTTGCAGAGCCCGACAGATTGTAAACAATCCATGGAAgagattttaattgaaaaacaatttgtgAGTGA-----AATTACA-AATTAATT------TCAAG-GGAAATAATTTAGca---acttttaatttttgttgttttttgcaGACAATGCAAATTTCAAAGgagaaaatcgatgaaaacgGAAACTCTAGCAAATGTGTAAAAGACGGCTTTGTTAACTCTATTTTAGAAAGGCTGAAGGTATGTACCTGAAACTTTactataaaacaaaaatatttttaaattt-----------aggaTGGAAAATTCACCCGGGCACTTCTCATTGCTctttttgtccaaactttCGTTCATCTTGATGACTGGGTAAGA
i caeJap4.Scaffold18194 C 0 I 1

a score=-1331.000000
s ce10.chrX             3396006  9 + 17718866 TTACACAAA-
s caeRem4.Crem_Contig0   528284  9 -  4500979 ataaaaaga-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   644758  9 - 33334924 TTAGAACGA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1819007  9 +  4147112 aaatagaaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  590984 10 -   823664 TTACCGggaa
i caeJap4.Scaffold18194 I 1 C 0
e cb4.chrX              8474895 31 + 21540570 I

a score=1299.000000
s ce10.chrX             3396015 3 + 17718866 AAC
s caeSp111.Scaffold629   644767 3 - 33334924 AAC
i caeSp111.Scaffold629  C 0 I 21
s caePb3.Scfld02_0      1819016 3 +  4147112 aat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  590994 3 -   823664 aac
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8474895 31 + 21540570 I
e caeRem4.Crem_Contig0   528293 0 -  4500979 C

a score=13.000000
s ce10.chrX             3396018 6 + 17718866 ACAAAT
s caePb3.Scfld02_0      1819019 6 +  4147112 gagaat
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18194  590997 6 -   823664 tgtaat
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8474895 31 + 21540570 I
e caeSp111.Scaffold629   644770 21 - 33334924 I
e caeRem4.Crem_Contig0   528293 0 -  4500979 C

a score=-1.000000
s ce10.chrX             3396024 105 + 17718866 AG---------TATAACGTGGTTTTCCAATTAGTATTGCATACCAAATTCATTTTTG--AACAAGTTTTAAATATGTGATTTCTTTTCACTTGGCCGGCGCTTAACCACGTTCAAA
s caeJap4.Scaffold18194  591003 107 -   823664 agaagcgccccTCTAAATCACCGTTCTTATTGGGGTTTTCAAATAGTTTGACTTTTAGAAAtaagctttaaaaata--atacCATTTCGGTTGGAA-------AATTACATGCGAA
i caeJap4.Scaffold18194 C 0 I 40
e caePb3.Scfld02_0      1819025  15 +  4147112 I
e cb4.chrX              8474895  31 + 21540570 I
e caeSp111.Scaffold629   644770  21 - 33334924 I
e caeRem4.Crem_Contig0   528293   0 -  4500979 C

a score=0.000000
s ce10.chrX             3396129 137 + 17718866 GGTGCACTATCGTCAGTAGAGATTTAGTGTAAATGCACGTATATTTGTTAAATATGACCAAATATCATAGCAGAAATAGTCCAATTTTTTAGAAAGATTTTCTAAAATGTTCAGTAAACAATTCCAAAATTATGTCC
e caePb3.Scfld02_0      1819025  15 +  4147112 I
e caeJap4.Scaffold18194  591110  40 -   823664 I
e cb4.chrX              8474895  31 + 21540570 I
e caeSp111.Scaffold629   644770  21 - 33334924 I
e caeRem4.Crem_Contig0   528293   0 -  4500979 C

a score=-883.000000
s ce10.chrX             3396266 95 + 17718866 AAAAAGTTGTTTGAAAAATTTTTCTATGATATTGCATTTGTAGGCTTAAAAAAACTAATCTTAAGCCTAAAATAACACACGAGTACTCTAATTTT
s caeJap4.Scaffold18194  591150 40 -   823664 aaaaaGATGGttgaaaa---------tagaagcgcatgtgc--------------------------------------------ctcta--tta
i caeJap4.Scaffold18194 I 40 C 0
e caePb3.Scfld02_0      1819025 15 +  4147112 I
e cb4.chrX              8474895 31 + 21540570 I
e caeSp111.Scaffold629   644770 21 - 33334924 I
e caeRem4.Crem_Contig0   528293  0 -  4500979 C

a score=-2175.000000
s ce10.chrX             3396361 35 + 17718866 ------------AAAGTGTTATAGCTA----TTATAAAGACTAAAAGAAAA
s caeRem4.Crem_Contig0   528293 26 -  4500979 ------------aaagtacAA-AACCA----TCATAAAG--TAAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  591190 41 -   823664 caggttttacgataGTTGCCA-AATCAAAGCTTGTAGtg--taa-------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1819025 15 +  4147112 I
e cb4.chrX              8474895 31 + 21540570 I
e caeSp111.Scaffold629   644770 21 - 33334924 I

a score=-174.000000
s ce10.chrX             3396396 21 + 17718866 TATGTTAATATTCTAATATCG
s caeJap4.Scaffold18194  591231 14 -   823664 attgtttttattct-------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1819025 15 +  4147112 I
e cb4.chrX              8474895 31 + 21540570 I
e caeSp111.Scaffold629   644770 21 - 33334924 I
e caeRem4.Crem_Contig0   528319  0 -  4500979 C

a score=110204.000000
s ce10.chrX             3396417 133 + 17718866 ATTTTTCAGCTTTGGATATCATACTCGACACAAATTTTCGAAAATTTCGGCCTAACCTCTGGAAAAGCTCAAACTGCGTCACTGATCATGTCGCTTCCACAAGCCGTCATTAGTATTGCACTCCTTGGGTAAG
s cb4.chrX              8474926 133 + 21540570 ATTTTCCAGCTCTGGATTTCGTATTCGActcaaatatttgaaaatttcggattgaGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAG
i cb4.chrX              I 31 I 1238
s caeRem4.Crem_Contig0   528319 130 -  4500979 ---TTTCAGCTGTGGATTTCCTACTCGacacagatttttgaaaactttggattAACGTCAGGAAAAGCACAAACTGCGTCTCTGATCATGTCACTACCACAAGCTGTGATTAGTATTGCTTTGTTAGGGTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   644791 133 - 33334924 ATTTTGCAGTTGTGGATTTCTTACTCTAcgcagatttttgaaaactttggtTTGAGCTCGGGACAAGCTCAGAAAACATCATTGATAATGTCACTTCCACAAGCTGTTATCAGTATTGCACTTCTAGGGTAAG
i caeSp111.Scaffold629  I 21 I 2
s caePb3.Scfld02_0      1819040 133 +  4147112 ACTTTTCAGCTATGGATTTCATACAGCacacaaattttcgaaaacttcggACTCTCTTCTGGACAAGCTCAGAAAACATCATTGATCATGTCATTGCCACAAGCTGTTATCAGTATTGCACTGTTAGGgtcag
i caePb3.Scfld02_0      I 15 I 178
s caeJap4.Scaffold18194  591245 129 -   823664 --tcttcaGCTGTGGATTTCCTATTCAACGCaaatatttgaaaactttGGACTTTCCTCTGGAAGGGCTCAAACTACCTCGTTGATCATGTCCCTTCCACAAGCTGTTATCAGTATCGCACTTCTTGGGTA--
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX             3396550 10 + 17718866 ATTTCATCGT
e caePb3.Scfld02_0      1819173 178 +  4147112 I
e caeJap4.Scaffold18194  591374  0 -   823664 C
e cb4.chrX              8475059 1238 + 21540570 I
e caeSp111.Scaffold629   644924  2 - 33334924 I
e caeRem4.Crem_Contig0   528449  0 -  4500979 C

a score=-20770.000000
s ce10.chrX             3396560 172 + 17718866 GAACCGGTTTCTCATTTTTATACAAGAACTGAAAACTTTCAATACAATGAAAGAAACTTTGATCAGTTTATTTTTAATGTAAATTGATTTTGAAAACTTGTAAAATCTCTAGGCATATTTTTTTGAACCAAAGATTTCTTGAGAACCAACTTTTATTTCACGACAATGGAAA--
s caeRem4.Crem_Contig0   528449  77 -  4500979 -----------------------------------------------------------------TTTTATTT--------AATCACTCATAAAGTATTCAAAA------AGGCA--------------AAAGATTCA--AAAGATCAATTTTCTCCTCACACCCATTTGAC--
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   644926  39 - 33334924 ---------------------------------------------------------------------------------AATACATCTTGCAGT----------------------------------------------------ATCTTCCAGTATTGTACATTGAAT--
i caeSp111.Scaffold629  I 2 I 1
s caeJap4.Scaffold18194  591374  35 -   823664 -------------------------------------------------------------------------------------------------------------------------------------------TGtagaccttttttttttggaattttatcAGAACT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1819173 178 +  4147112 I
e cb4.chrX              8475059 1238 + 21540570 I

a score=-1325.000000
s ce10.chrX             3396732 5 + 17718866 ---ATGTT
s caeRem4.Crem_Contig0   528531 5 -  4500979 ---ATGTC
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      1819351 5 +  4147112 ---acagt
i caePb3.Scfld02_0      I 178 C 0
s caeJap4.Scaffold18194  591409 4 -   823664 TGAA----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8475059 1238 + 21540570 I
e caeSp111.Scaffold629   644965 1 - 33334924 I

a score=265025.000000
s ce10.chrX             3396737 283 + 17718866 TTCGTTCCAGATGCTTTGACAACTTTGATCGCCGAACTCTTCTCATTGTTCCGACAATTCTCAGCGTGATATTTGGTTTTTTGGCGATCGTCTTCTCCAGCCCAGGACTGTCGAATGTCATTCCCCTATTTGTTATCATTCCCATCTTAGCAACTTTCGATTTATCCGTCGCTGCGATCAGTGGCGAATCGGCTTACGCGATCGTACCCGAACTATTCCTCGCAAATGATAAAGTTTTGGGATCAGCTATTGTGGGCATCGTTCAGGTTTGTTCATGATGTTT
s cb4.chrX              8476297 279 + 21540570 TCCATTCCAGATGCTTTGACAACTTTGATCGCCGAACACTTCTCATCGTTCCAACGATTCTAAGTGTAATATTCGGTTTCCTCGCCATCGTCTTCTCCAGCCCCGGCCTCTCAAACCTTGTACCGCTATTTGTTATCATACCCATACTAGCCACTTTTGATCTATCAGTTGCCGCGATCAGTGGAGAATCGGCTTACGCGATTGTACCCGAACTTTTCCTTGCAAATGACAAAGTGCTGGGATCAGCTATCGTTGGCATCGTTCAG----GTTTGTGATCTCT
i cb4.chrX              I 1238 I 7
s caeRem4.Crem_Contig0   528536 283 -  4500979 TCTTATTCAGATGCTTCGATAACTTTGACCGCCGAACGCTTCTCATCGTTCCAACAATTCTCAGTGTAATATTCGGATTCCTTGCTATCGTCTTCTCCAGTCCACTTCTTTCAAACGTTTTACCGCTATTTGTCGTTATACCCATTCTAGCCACTTTCGATTTATCGGTCGCCGCGATCAGTGGAGAATCGGCTTACGCTATCGTGCCCGAACTATTCCTTGCAAATGATAAAGTATTGGGATCAGCCATCGTCGGCATCGTTCAGGTTTGTTTGTGATATGT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold629   644966 282 - 33334924 -CTATTCCAGATGTTTCGACAACTTCAACCGCAGAACACTTCTGATCGTTCCAACAGTTCTCAGTGTAATTTTCGGCTTCTTTGCTATCGTCGTTTCCACTCCTGCCTTCTCCAACTTCATTCCACTGTTCGTTATCATACCCATCTTAGCCACTTTCGATTTGTCTGTCGCCGCGATCAGTGGCGAATCGGCTTATGCGATTGTACCTGAACTCTTCCTTGCAAACGATAAAGTTTTGGGATCAGCTATCGTCGGCATCGTTCAGGTTTGTTTGTGATATAT
i caeSp111.Scaffold629  I 1 I 7
s caePb3.Scfld02_0      1819356 283 +  4147112 CATTTTCTAGATGTTTCGACAACTTCAATCGCCGAACACTCCTCATCGCACCAACCGTTCTCAGTGTAATATTCGGTTTCTTTGCTATCCTCTTCTCCAGTCCTGGCTTCGCAAACTTCATTCCTCTGTTCATTATCATACCCATCTTAGCCACTTTCGATTTGTCCGTCGCAGCGATCAGTGGTGAATCGGCTTATGCGATCGTACCTGAACTTTTCCTTGCAAATGATAAAGTTCTGGGATCAGCTATCGTCGGCATCGTTCAGGTTTGTTTATGATATCT
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold18194  591413 283 -   823664 TCGGTTCCAGATgctttgaccattttggtcgTCGACCTCTTCTCATTGTTCCGACAGTTCTCAGCGTTATCTTTGGATTCCTGGCGATCGTTTTCTCCAGTCCTAGCTTTGCCACCGTCATCCCGTTATTCGTTATCATTCCCATCTTGGCCACTTTGGATCTTTCGGTCGCTGCAATAAGTGGAGAATCTGCTTACGCAATCGTTCCTGAACTGTTTCTTGCAAAAGACAAAGTGCTGGGATCGGCAATCGTCGGTATTGTCCAGGTTACTGTACTAGATTT
i caeJap4.Scaffold18194 C 0 C 0

a score=-7129.000000
s ce10.chrX             3397020 22 + 17718866 CGCTGTAACAAT---------TTTTTAAGGT
s cb4.chrX              8476583 23 + 21540570 CGTACAAACCAGAATAT----ATGTTG----
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   528826 18 -  4500979 CACGCAAAAAAG---------TTCTTA----
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold629   645255 15 - 33334924 CACATCAAACGA---------TTC-------
i caeSp111.Scaffold629  I 7 C 0
s caeJap4.Scaffold18194  591696 23 -   823664 CGTGTAAATCAAACAACCAGAAT--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1819639 28 +  4147112 I

a score=1946830.000000
s ce10.chrX             3397042 2831 + 17718866  
s cb4.chrX              8476606 2807 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   528844 2831 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   645270 2815 - 33334924  
i caeSp111.Scaffold629  C 0 I 19
s caePb3.Scfld02_0      1819667 2819 +  4147112  
i caePb3.Scfld02_0      I 28 I 29
s caeJap4.Scaffold18194  591719 3003 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1107.000000
s ce10.chrX             3399873 1 + 17718866 -T
s cb4.chrX              8479415 1 + 21540570 -T
i cb4.chrX              I 2 I 35
s caeSp111.Scaffold629   648104 1 - 33334924 -t
i caeSp111.Scaffold629  I 19 I 1
s caeJap4.Scaffold18194  594722 1 -   823664 A-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1822486 29 +  4147112 I
e caeRem4.Crem_Contig0   531675 1 -  4500979 I

a score=-3498.000000
s ce10.chrX             3399874 15 + 17718866 -------GGTTTCAGCTGAACA--------
s caeRem4.Crem_Contig0   531676 15 -  4500979 -------AGTTCTGACTTTTCA--------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold629   648106 10 - 33334924 -------GTTTCTTACT-------------
i caeSp111.Scaffold629  I 1 C 0
s caeJap4.Scaffold18194  594723 30 -   823664 ATTTTCAAGCCCAGGCCACGTATCCGAAAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1822486 29 +  4147112 I
e cb4.chrX              8479416 35 + 21540570 I

a score=-5267.000000
s ce10.chrX             3399889 24 + 17718866 GTCATTAGAAAAAATTGCCGAGA--------T-
s caeRem4.Crem_Contig0   531691 16 -  4500979 -Ggcttgaagaaaa------aga----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   648116 18 - 33334924 GTCATTGTATGAAA------AGA--------T-
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0      1822515 26 +  4147112 ATCattctgacaga------aaaaaaacggtt-
i caePb3.Scfld02_0      I 29 I 3
s caeJap4.Scaffold18194  594753 18 -   823664 ----TTCGGTAAAA------GAA-----GCTTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8479416 35 + 21540570 I

a score=264719.000000
s ce10.chrX             3399913 439 + 17718866 AACTTACGGTTTCTAATTGTAGCACCCGTCCATGTGTATGCAATTGGCAATATGAAACTTGCCACGAGAAGGAATTTGCCTAATAGCATGCTGAAA--AAATAC------AAAAATATATTTATTCAGAAATACGTTC--ACC--AAATTTTCGAATGAGAAGAATGGGTGAAAGGGCTATTGCGG----AAAAACAAGCAATTTAAAGGAA-CAAAAATGACCAAAATGTACATAGGTAGCCGGAC-TGGTGGCGGTTGTTTGAGCACCTCGGCT-----CACAATGCACT-TCGTACAGTGTGCTCATTTTCCAACGATTATCGCTCA--AGGCGAAAAGAAA--TGAGGATGGGTGAGTGAGG--------GGGACTC------CACTT-TCCGCAAAAACCACCGCACAAAC-AATAAA----ATTATGAC--GATTT--------GAGTCAATCCAA-----GTATCCAA-----GAAAAAAACAAATTTGAATAAAACACG
s cb4.chrX              8479451 455 + 21540570 TACTTACGGTTTCTAATAGTTGCACCAGTCCAGGAATAAGCAATTGGCGTTATGACACATGCTGCCAGGAGAAGCTTTGCTAACAGCattctg-----aaaaac------ggaaatgaaatgaa----aattattttcaaaacgacACTGGTCAA-----------GAGTG-GAGGGCAATTGCGGAAGAAAAAAC-AGCATTTTCAAGGGaacaaaaatgaccaaaatgtACATAGGTAGCCGGACGGGGTGGTGGTTGTTTGAGCACCTCGGCTTCCACCACAATGCACT-TCGTACAGTGTGCTCATTTTCCACCGATTATCGCTCAGGGGGCAAAAGGAAA--TAAAGATGGGTGAGGAAGAGAAGCGGAGGGGCTCCTCACTCTCTT-AGCGCAAAAACCACCGCACAAACAAATCAAAATCATTAAGACGAGATTT--------GAGACAAAACATCAGATCTGTC---------TGGAGAAGACAGCTGACCAGA---TA
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   531707 413 -  4500979 aactcacgATTTCTAATTGCTTCACCGGTCCATGAGTAAGCAATGGGTAATATGACACATGCTGCGAGGAGTAGCTTGGCTAACATCatcctgaaatcaaaatt------aaaaataggtCGAT----GAATGATTTc--aacgaaaatttcaaa-------aagcggGTG-AAGGGCTATTGCGG----AAAAAC-AGCATTTCCAAGGAA--CAAAATGACCAAAATGTACATAGGTAGCCGGAC-TGGTGGTGGTTGTTTGAGCACCTCGGCT-----CACAATGCACT-TCGTACAGTGTGCTCATTTTCCACCGATTATCGCTCA--GGGCGAAAGGAAA--TAAGGATGGGTGAG-------------GGGGCTC------CTCTT-AGCGCAAAAACCACCGCACAAAC-AATCAA----ATTATGAC--GATTC--------GAGacaaatgat------tttc---------aaaacattatgCTCAACTCG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   648137 415 - 33334924 AACGTACGATTTCTGATAGTAGCGCCTGTCCAAGAGAAGGCGACGGGTAGTGTAACACACGCCGCAAGGAATATATTGGTTAACAGCATCCTGAAATAACACAT-----TTAGAATAGACCAAT----GAATGATTTC--AAcgagaattttcaa------aaagcggGTG-AAGGGCTATTGCGG----AAAAAC-AGCATTTTCAAGGAA--CAAAATGACCAAAATGTACATAGGTAGCCGGAC-TGGTGGTGGTTGTTTGAGCACCTCGGCT-----CACAATGCACT-TCGTACAGTGTGCTCATTTTCCACCGATTATCGCTCA--GGGCGAAAGGAAA--TAAGGATGGGTGAG-------------GGGGCTC------CTCTT-AGCGCAAAAACCACCGCACAAAC-AATCAA----ATTATGAC--GATTC--------GATACAAATGG------ATTTC---------ACAA-GATATCCCAGGAGAGA-----
i caeSp111.Scaffold629  I 3 C 0
s caePb3.Scfld02_0      1822544 425 +  4147112 AACTTACGATTTCTGATAGTAGCTCCCGTCCAGGAGTAGGCGATGGGGAATAAAATGCATCCGGCTAGGATTATTTTGGTTAATaacatcctgaaaaaatagacaggaaatgaaataaaacgGG----GAAcgatttc--aacgaaaaattttga------aaagcgggTG-AAGGGCTATTGCGG----AAAAAC-AGCATTTTCAAGGAA--CAAAATGACCAAAATGTACATAGGTAGCCGGAC-TGGTGGTGGTTGTTTGAGCACCTCGGCT-----CACAATGCACTCTCGTACAGTGTGCTCATTTTCCAACGATTATCGCTCA--GGGCGAAAGGAAA--TAAGGATGGGTGAG-------------GGGGCTC------CTCTT-AGCGCAAAAACCACCGCACAAAC-AATCAA----ATTATGAC--GATTC--------GAGACAAatgat-----atttc---------aaaacaatatgcTCGTTCACA---TG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194  594771 416 -   823664 AACTTACGATTTCTGATTGTTGCACCTGTCCAGGCGGTGACACTGACATATATAAAGCAAACGGAAAGGAGAAGTTTGGCCAACAACATCCTGCAAAGTTCAAT------TTAAGAGAGTCAGT----AATAATTTTA--ATAGAAAAGGCGCGA---AGGAGAGC-AGTC-ataaaaaatggggg----aaaaac-aACA-TTTCAAGGAA--CAAAATGACCAAAATGTACATAAGTAGCCGGAC----TGGTGGTTGTTTGAGCACCGCGGCT-----CACAATGCACT-TCGTACAGTGTGC----TTCCCACCGATTAACGCTGA--GGACGCAAGGAAAATGAGGAATGGGTGAT-------------GGG----------CTCTTAAGCGCAAAAACCACAGCACAAAC-AATCAA----AATATGAC--GATTCTTCCACAGGAACGAAATCGG-----ATTGCCCAAATCCAAAAACAACGCG---------------
i caeJap4.Scaffold18194 C 0 I 47

a score=-7458.000000
s ce10.chrX             3400352 51 + 17718866 TAGACAATAATCAGGCCTGTACCAGGCCAAAAGGTAGAATAATTGAGTTGG
s cb4.chrX              8479906 13 + 21540570 TAGGAA--------------------------------GTCACC------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   532120 13 -  4500979 TGGAAA--------------------------------ATGACC------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   648552 23 - 33334924 --GGGACA-----------------GTCAGAAGAG---ACGACC------G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1822969 28 +  4147112 TTGGAAAT-----------------GCCCAAAAAGAGAACGACC------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595187 47 -   823664 I

a score=-18559.000000
s ce10.chrX             3400403 198 + 17718866 TCCGTCAGGCAGCCAAC-------AAAAAT-GTCTGAATGATTGTGGCTACATAGAA-----------TGGTCTCTACATGGGAAGGTGGGCGGAGCACC-TTATCTAGGTCAATCTCG---GCCCATTAA---TGCGGC---CCAGA------------CCCTT-TATGACATCATGAACAATAGCCG-------AG-CAGGATTTGATCTTTGCTCTCTA----ATAAGAAGGGTGTTAATGAATGAGCA
s cb4.chrX              8479919 187 + 21540570 TCCACTAGAAGAATACC------------GGGCTAGAATGACTAGGGGTCC-TGGTC-----------TGGCACACATCGGGCCAATTGGGCGTGGTCTA--------------CCCGGATAGTCTGTCAGCCTAATGGT---CCAGGTCACAGAC------------TGACGTCATAAACAATAGGTG-------AGAAAAGGTCTGGTCTTTGATCGCAT-CTTCTGGG-AAGG---TAATAACTGAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   532133 199 -  4500979 TTCA-GAGAAGAATACCAAAATCCAGAGGGGACAAGAATGAGACTGAGT-----GACAAAAGACGGTATGGTCCATGTAGGTGagaatgggcgtggccta--------------tcTGG---GTCAAATAG---AATGGT---CCAGA--ACAGTC-------TT-TATGACGTCACACACACAAAGAG-------AG---AGATTTGGTCTTTGATGTCTT-CCTCTGGGAAAGG---TAATGAGTGAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   648575 207 - 33334924 TCCTCCAGGTGAACACA-------AATGAG-GAATGACAGATTAAGATGA----GGA-----------TGGTCCGTGTGTCTAAGA--GGGCGGGGTTGGCCTATCT-TGTTAATCTGG---TACTTGCCT---GACGGA---CCAGA--ATATTCTAGATCTTT-TATGACGTCATAAATAAAGACTGTATGAGAATGAGTGA--TGGTCTTTGATGTCTTCCCTCTGGGAAAGG---TAATGA--GAGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1822997 194 +  4147112 TTTGTCGAGTG-GCATC-------TTCGAGAGAATGAATAAATCTGGGTC----GAG-----------TGGTCCGCAACACGAAGG-TAGGCGGGGCTAA---------GGTAATCTTG---GCCAAACAG---AGAGGA---CCAGA--CTAATCTAGATCTTTCTATGACGTAATAAACAATGACCG-------ATGGATAGATCGGTCTTTGATCTCTTATCCTTTGG--AGG---TAATGA--GAGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  595234 184 -   823664 CTCATCAGGAGCACACA-------AAACTC-GAATGAATGGATCTGAACA----AAA-----------CACCGCACAATGACagaaaagggcggagcctg-----cCTGGGTCATCTCA---TCCCAATGA---GTCGGTATCCCAGA----------GGTCCCT-TATGACGTCACCTGTA------G-------AT---CGG--TGGTCTTTGGCCTCTT----ATAAA-GAGGTGTAAATGAGGGAAca
i caeJap4.Scaffold18194 I 47 I 1412

a score=4208.000000
s ce10.chrX             3400601 26 + 17718866 GTCTACC------AACAT--TGATTGAAGAGACA
s cb4.chrX              8480106 25 + 21540570 GAATACC------AAATGTTTGATGGAAGGG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   532332 26 -  4500979 GAATACC------AACTG--TGATTGAAGAGGTA
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold629   648782 22 - 33334924 GAATACC------AATGA--TGATTGAGGA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1823191 28 +  4147112 AAATAccgacgatgatga--tgattgaaGA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I

a score=838.000000
s ce10.chrX             3400627 29 + 17718866 GTCGTAAAGATGGTAATCT---------TGTT--GCTCAG
s cb4.chrX              8480131 38 + 21540570 GTATTAGAGATGGACATCTATGGATGACAATT--GCTCGG
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold629   648804 37 - 33334924 --GGGAAAGATGGTAATCTTTATGTCA-AATTGAGCCCAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1823219 36 +  4147112 --CGTGTAGATGGACAGTTATGGATT--TATAGGGCTCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e caeRem4.Crem_Contig0   532358 36 -  4500979 I

a score=5813.000000
s ce10.chrX             3400656 18 + 17718866 TAAG---ATTGAAAGATCAGA
s cb4.chrX              8480170 18 + 21540570 AAAG---ATCAAATGATCAGA
i cb4.chrX              I 1 I 1079
s caeRem4.Crem_Contig0   532394 18 -  4500979 TAAG---ATCAAAAGATCAGA
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold629   648841 21 - 33334924 TATGGACGACCAAAGATCAGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1823255 18 +  4147112 TATG---GTTCAAAGACCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I

a score=-462.000000
s ce10.chrX             3400674 8 + 17718866 CTACAAAA---
s caeRem4.Crem_Contig0   532412 8 -  4500979 ---CAAGAAGA
i caeRem4.Crem_Contig0  C 0 I 1279
s caeSp111.Scaffold629   648862 8 - 33334924 ATACAAAA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1823273 8 +  4147112 Tgatcaaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8480188 1079 + 21540570 I

a score=-857.000000
s ce10.chrX             3400682 2 + 17718866 CA---
s caeSp111.Scaffold629   648870 2 - 33334924 GA---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1823281 5 +  4147112 gaaca
i caePb3.Scfld02_0      C 0 I 1264
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8480188 1079 + 21540570 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=451.000000
s ce10.chrX             3400684 10 + 17718866 -----GTTGGGAAAT
s caeSp111.Scaffold629   648872 15 - 33334924 TCAATGTAGAGAAAT
i caeSp111.Scaffold629  C 0 I 1046
e caePb3.Scfld02_0      1823286 1264 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8480188 1079 + 21540570 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=0.000000
s ce10.chrX             3400694 1050 + 17718866  
e caePb3.Scfld02_0      1823286 1264 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8480188 1079 + 21540570 I
e caeSp111.Scaffold629   648887 1046 - 33334924 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=100.000000
s ce10.chrX             3401744 9 + 17718866 AGAGTACGA
s caePb3.Scfld02_0      1824550 9 +  4147112 AGAGCCCTT
i caePb3.Scfld02_0      I 1264 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8480188 1079 + 21540570 I
e caeSp111.Scaffold629   648887 1046 - 33334924 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=7558.000000
s ce10.chrX             3401753 126 + 17718866 CTCATCCATTTTCGCATTTTAAAATGCTCCTTTTACTTTTCGCCCTCTGCGGTGGG------------TCTCG----ACGAACACAATTTTTCTCGT----------------GGACGACTGAGTCATTTGCACATCCCACAATGGGTGTCCTTTCCT
s cb4.chrX              8481267 152 + 21540570 CTCAGCCATTT----ATATC-TCGGGTTCTCcat-cttttttcctttcacaCTAGGAGAAAGGGGTTCTCTAGCAAGACGAACGCAATCTTTTTTCCTATTGGATTATGTGTGTGGTGTACGACTCATTTGCACATTTGGCGTTGTGTGTCCTTTCCT
i cb4.chrX              I 1079 I 610
s caePb3.Scfld02_0      1824559 127 +  4147112 CTCACCCGTTT----ATGTTGTCGAGTTCCCTTTCCCCTTTTGCCCTCGTATTGGCAG----------TCTCGCTCTACGaacacattctttttttc-----------------gttgagtGACTCATTTGCACATCCAACAATGAATGCCCTCTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e caeSp111.Scaffold629   648887 1046 - 33334924 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=60.000000
s ce10.chrX             3401879 2 + 17718866 TT
s caePb3.Scfld02_0      1824686 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 I 499
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   648887 1046 - 33334924 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=0.000000
s ce10.chrX             3401881 581 + 17718866  
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   648887 1046 - 33334924 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=656.000000
s ce10.chrX             3402462 61 + 17718866 AAAAATTCAAAAGCaaaaatataaatgtttattaaattttttttC---CCAGT-----AAATCAGTAAA
s caeSp111.Scaffold629   649933 63 - 33334924 aaaagttaaaTAGCAAGAacac------ttttcaaatattgtTCTGATTCAGTCTACAACATCAATTCA
i caeSp111.Scaffold629  I 1046 C 0
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I
e caeRem4.Crem_Contig0   532420 1279 -  4500979 I

a score=8004.000000
s ce10.chrX             3402523 48 + 17718866 -CTTTCAGGATGTTATGGTTGAACTCGCGGCGGCCTTTGGAGAAGAAAA
s caeRem4.Crem_Contig0   533699 48 -  4500979 -CCTTTAGGATATCATGGTTGAACTTGCCGCATCTTACGGAGAAGAGAA
i caeRem4.Crem_Contig0  I 1279 I 94
s caeSp111.Scaffold629   649996 49 - 33334924 CATTACAGGACATCATGGTTGAGCTTGCCGCTGCTTACGGAGAAGAAAC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I

a score=191.000000
s ce10.chrX             3402571 2 + 17718866 TG
s caeSp111.Scaffold629   650045 2 - 33334924 TG
i caeSp111.Scaffold629  C 0 I 148
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I
e caeRem4.Crem_Contig0   533747 94 -  4500979 I

a score=0.000000
s ce10.chrX             3402573 553 + 17718866  
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e caeJap4.Scaffold18194  595418 1412 -   823664 I
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   650047 148 - 33334924 I
e caeRem4.Crem_Contig0   533747  94 -  4500979 I

a score=480.000000
s ce10.chrX             3403126 38 + 17718866 TTTTATTTCAACACAATCATTGGTTTCTCTCTACATAG
s caeJap4.Scaffold18194  596830 32 -   823664 ttctatttcgaaaaagt------tttactccgaaacag
i caeJap4.Scaffold18194 I 1412 C 0
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   650047 148 - 33334924 I
e caeRem4.Crem_Contig0   533747 94 -  4500979 I

a score=-791.000000
s ce10.chrX             3403164 42 + 17718866 TTATGTATCCTTAAACTACAGAAAAATTTTTAACTTCA------TTCA
s caeRem4.Crem_Contig0   533841 48 -  4500979 TTGTGAAGTCTTAACATATTTAAAATGTCttgattctgaaatgtttGC
i caeRem4.Crem_Contig0  I 94 C 0
s caeJap4.Scaffold18194  596862 33 -   823664 ---------ttctatttcactacaatttcaaaattttg------ttcc
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1824688 499 +  4147112 I
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   650047 148 - 33334924 I

a score=1375.000000
s ce10.chrX             3403206 11 + 17718866 AGCAATCATTC
s caeRem4.Crem_Contig0   533889 11 -  4500979 AACAATTATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1825187 11 +  4147112 AACATTcactc
i caePb3.Scfld02_0      I 499 I 1
s caeJap4.Scaffold18194  596895 11 -   823664 AACTTTCCTAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8481419 610 + 21540570 I
e caeSp111.Scaffold629   650047 148 - 33334924 I

a score=-2530.000000
s ce10.chrX             3403217 2 + 17718866 AG-
s cb4.chrX              8482029 1 + 21540570 a--
i cb4.chrX              I 610 C 0
s caeRem4.Crem_Contig0   533900 1 -  4500979 A--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1825199 1 +  4147112 a--
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold18194  596906 2 -   823664 A-T
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   650047 148 - 33334924 I

a score=34043.000000
s ce10.chrX             3403219 86 + 17718866 ----------AAAAACTTATAACGGTCACATATACGTCGACCACGATATGCACGTTGAATT-----AGAAGAGTGACA-GCTGTA----------CTCTGATCGCTACCTGA-
s cb4.chrX              8482030 92 + 21540570 ----------aaaagataaaaacgGTCACATAGACGTCCACCAGATTTTGCACGCAGAGTTACCGCACGAGAGTGACAGGTTGTA----------CTCTGATCGCTACTTTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   533901 90 -  4500979 ----------AATAGATAATAGCGGTCACATAGCTGTCCAACACATTCAACACGTCGAATAGATGCAATAGAGCGACA-CTTGTA----------CTCTGAACGTT-TATGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   650195 90 - 33334924 ----------AAAAGATAAAACCAGTCACATAAACGTCGAACAGATTTGGCACGTCGAATTGATAGAGCAGAATGACA-CTTGTA----------CTATGATCGCT-ACTTT-
i caeSp111.Scaffold629  I 148 C 0
s caePb3.Scfld02_0      1825203 90 +  4147112 ----------taaaaatgatagCGGTCACACAAACGTCCACCAGATTTAGCACGTCGAATTGATGGTGCTGACTGACA-CTTGTA----------CTCTGATCGCT-ACTTA-
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194  596908 96 -   823664 AGAAGTTCTGAGAAAATAACGACTG-----CAAACGTCCAATACATCTTGCATGTC----------AGCCAAATGTCA-GTTATAGTCTCCATCTTTCTGATCACT-TCGTTT
i caeJap4.Scaffold18194 C 0 I 5169

a score=-303.000000
s ce10.chrX             3403305 1 + 17718866 A
s cb4.chrX              8482122 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   533991 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   650285 1 - 33334924 T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0      1825293 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  597004 5169 -   823664 I

a score=922067.000000
s ce10.chrX             3403306 1031 + 17718866  
s cb4.chrX              8482123 1030 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   533992 1029 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   650286 1031 - 33334924  
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0      1825294 1031 +  4147112  
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   16537 1026 +   823664  
i caeJap4.Scaffold18194 n 5169 C 0

a score=12909.000000
s ce10.chrX             3404337 106 + 17718866 ATTTGAAAATATATTTTACGGGCTTTTGATAGCTAACTCTAACAGCAG-----CACAC------AAGTTTTCAGGTTTCTGGACCAAAGGAGGAGATCGTCTACTCCATGGAAAACG
s cb4.chrX              8483153  86 + 21540570 ----GGGAATAT----------------AAAGATATGTCACTATTTCA-----TTTAT------ATCATTATAGGTTACCGGACCAAAGGAGAGCCTCGTCTACTCCGCCGGAAACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   535021  89 -  4500979 AATTGAAACTAC----------------AAAGTTAACGTATAAAACCT-----CTCTT------A-CATTTCAGGCCACTGGACCAAAGGAAGACATTGTTTACTCTGGCAAAAACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   651318  82 - 33334924 AATTG------------------------ATTAGAAATCATTACTCAT-----TTAAT------CTGTTTTCAGGTCAACGGACAAAAGGAAGACATCGTCTACTCTGTCGGAAATG
i caeSp111.Scaffold629  I 1 N 0
s caePb3.Scfld02_0      2178336  89 -  4147112 atttg-----------------------aaaaaaaaacccctaGCAGT-----TTACTGAACCCCTTTTTATAGGTCACCGGACCAAAGATGGACATCGTCTATTCCAATGGAAACG
i caePb3.Scfld02_0      n 10 C 0
s caeJap4.Scaffold18194   17563  85 +   823664 --------------------------GCAATTATAACTTACTAAAACTAAATGTATCT------GAAACTTAAGGTTACTGGAACAAGAGAAGAGATTGTCTACTCTATGGGCTACG
i caeJap4.Scaffold18194 C 0 C 0

a score=142506.000000
s ce10.chrX             3404443 259 + 17718866 AGAAGCTTATTGAGCAATTCTACCAACAAGGAGACAAGGCTGAGGTCAACCCATTCAAGGCTATCGAGATGGAGCAGAAGGTTGAGCAACTTCAAGAAATCTTCCGCCAAATTCAAGAGCACGAGCAGAACACCCCAGAAACTGTCCACCTTATTGCCCGCGCCGTCCGCATGTTCCGCATGTGCACCATCGAAGAACTCAAGAAGGTTCACACCACCATCTACACTAAGGCCGAGAAGAAGGTAACCAATACACATTT
s cb4.chrX              8483239 257 + 21540570 AGTGGCTCATTGAGCAATTCTACCAACAAGGAGACAAGGTCGAGGTCAACCCATTCAAGGTTATCTCCCCAGAGCAAAAGTTCGAGGAGCTCAGAGAGATTTTCCGTCAAGTCCAAGAGCTTGAGGAGAACACTCCAGAAACCGTTCATATGCTTGCCCGTGCCGTCCGCATTGTTCGCATGCTCTCCATCGAAGAGCTCAAGAAGGTCCACACCAAGATCTACACCGAATCTGAGAACAAGGTAAGTTGTAC--ATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   535110 252 -  4500979 AGATGCTCATCGAGCAATTCTACCAACAAGGAGACAAGGTTGAGGTTAACCCATTCAAGGTTATCACTACCGAGCAAAAGATGGAGCAACTCCAAGAGATTTTCCGTCAAGTTCAAGAGCACGAGCAAAACACTCCAGAAACCGTTCACCTCATCGCCCGCGCTGTCCGCGTTTTCCGTATGTGCACCATTGATGAGCTCAAGAAGGTTCACTCCGCCATCTACACCAAGTCTGAGGAAAAAGTA--CTGTAA-----C
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2178425 251 -  4147112 AAGAGTCTATTGAGCAATTCTACCAACAAGGAGACAAGGTTGAGGTCAACTCATTCAAGGTCATCCCATCCGAGCAGAAGATTGAGCAACTCCAAGAGATTTTCCGTCAAATCCAAGAGCACGAACAAAACACTCCAGTAACTGTACACCTTTTGGCTCGTGCCGTTCAACTTTTCCGCATGTGCACCATCAATGAGCTCAAGAAGGTTCACACCACCATCTACACTAAGTCTGAGGAGAAGGTA--TCATT------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   17648 252 +   823664 ATCAGCTCATCGAAGAGTTCTATCAAAAAGGAGACAAGGTCGAGGTCAATCCATTCAAGGTTTTGCCAACTGAACAAAAACTTGAGCAGCTCCAAGATATCTTCCGTGAAATCGGAGAACAAGAAGAGAACACCCCAGAAACTGTTCACTTGATCGCTAAGGCTGTTCGTCTCTTCCGTATGTCCACCATCGAAGAGCTCAAGAAGGTCCACACCATCATCTACGCTAAGGCGGAGAAGAAGGTATACATTT-------
i caeJap4.Scaffold18194 C 0 I 30

a score=-4178.000000
s ce10.chrX             3404702 26 + 17718866 CATAATCACTAATATCA-------TGCT--CTCTC
s cb4.chrX              8483496 33 + 21540570 AAAACTGAGCAATCTAT--ACACATGCGAATACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   535362 30 -  4500979 AAGAC--AACAAACTCA--TCacctgtt-cttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2178676 30 -  4147112 GAAACTTACTAACCTCTTGACACATGTG-----AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   17900 30 +   823664 I

a score=825150.000000
s ce10.chrX             3404728 1219 + 17718866  
s cb4.chrX              8483529 1219 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   535392 1219 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2178706 1219 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   17930 1220 +   823664  
i caeJap4.Scaffold18194 I 30 C 0

a score=1488954.000000
s ce10.chrX             3405947 1555 + 17718866  
s cb4.chrX              8484748 1555 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   536611 1555 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5589931 1556 + 20921866  
i caeSp111.Scaffold630  N 0 C 0
s caePb3.Scfld02_0      2179925 1561 -  4147112  
i caePb3.Scfld02_0      C 0 n 0
s caeJap4.Scaffold18194   19150 1549 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=567941.000000
s ce10.chrX             3407502 734 + 17718866  
s cb4.chrX              8486303 724 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   538166 716 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5591487 718 + 20921866  
i caeSp111.Scaffold630  C 0 I 32
s caePb3.Scfld02_0      1826335 720 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194   20699 670 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9945.000000
s ce10.chrX             3408236 39 + 17718866 TAAGGCTGAATGATGTGTAGTTTTAACAAAATACATATT
s cb4.chrX              8487027 37 + 21540570 TAAGAGTGAGT--AAACCTGTTGAAATCGGTTGCAAATC
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   538882 37 -  4500979 TATGCTCTAAC--tgctttttcactttcaattaaacaac
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      1827055 31 +  4147112 -----TCTAAC--TATCACTTTGATGCATAAT-cacatt
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18194   21369 36 +   823664 TTTACAAAAGT--TGTTTAACAtccaaacaattaaaat-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5592205 32 + 20921866 I

a score=267237.000000
s ce10.chrX             3408275 307 + 17718866 TTTCAGAACTCGTCAAGAAGACCCTCATCAAGGAGTTCTCCAACCGCGTCTGCTTCTCCATCGAGCCAGTCTCTGAGTGCCGCCGTGGACTCGAATCCGAGAAGACTTCCAACAAGAAGATTCGTTTCACTTGCATGCCACGCCACAGCAAGAACGCTCGTCGTTTCTTGAAGGAAGCTCGTGAGCAAACTGTTGCCGAGTTGGTCGATTTCCCAGTCTCCTTCGTTGAGTCTGTCAAGATCCCAACCGCCTGCGTTGC--CTATTAGAT----TTCATAT---------------GTTTTAT----------TA-ATT----TTCTATTAAA--TAAAGCATTT
s cb4.chrX              8487073 331 + 21540570 TTTCAGAGTCCGTCGAGAAGACCCAAATCAAGGAATTCTCCCACCGCGTCTGCTTCTCCCTTGAGCCAGTCGCCGAGTGCCGTCGTGGATACAAATCTGGAAAGACCTCCACCAAGAAGATCCGTTTCACCTGCATGCCACGCCACAGCGAGAACGCTCGCCGTTTGTTGAAGGAGGCTCGTGAGCAGAACATTCTTGACTTGTCCGACTTCGAAGTCTCCTACGTCGAGTCCGTCAAGGTCCCAACCACCTGTGTTGAGGCTTTCTAAT-CTGTCTATACGTGTCACCTTCTTGTGTTTTAT----------TT-GAAGTAGTTTctcaaaa--taaaactttt
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   538925 309 -  4500979 tttcagaatctgttGAGAAGACCCTCATCAAGGAATTCTCCAACCGCGTCTGCTTCTCCCTTGAGCCAGTCACCGAGTGCCGTCGTGGATTGGAATCCGAGAAGACTACCTCCAAGAAACTCCGCTTCACCTGCATGCCACGCCACAGCAAGAACGCCCGTCGTTTCATGAAGGAGGCCCGTGACCAGACCATCCTCGACTTGGCTGACTTCCCAGTATCCTACGTTGAGGCTGTCAAGATCCCAACTGCCTGCGTCGC--CTATTAGAT-TTTCCCACAC---------------GTTTTAT----------TT-GAATCACT-----GCAA--TAAAACTTCT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5592237 310 + 20921866 TTTCAGAATCTGTTGAGAAGACCCTCATCAAGGAGTTCTCCCACCGTGTCTGCTTCTCCCTCGAGCCAGTCACTGAATGCCGTCGTGGATACGAATCAGAGAAGACTTCCACCAAGAAGATCCGTTTCACTTGCATGCCACGTCACAGCACCAACGCCCGCCGTTTCTTGAAGGAGGCTCGTGAGCAAAACGTTCTCGACTTGGCCGACTTCTCCGTCTCCTACGTCGAGGCCGTCAAGGTTCCAACTGCCTGCGTCGC--CTTCTAGAT-ATCTTATCAC---------------gttttat----------tc-gaa----tttcattcaa--taaaattttc
i caeSp111.Scaffold630  I 32 C 0
s caePb3.Scfld02_0      1827093 312 +  4147112 ttttagagTCTGTTGAGAAGACCCTCATCAAGGAGTTCTCCCACCGCATCTGCTTCTCCCTTGAGCCAGTCACCGAGTGCCGCCGTGGATACGAATCCGAGGAGACTACCTCCAAAAAGATCCGTTTCACCTGCATGCCACGCCACAGCGAGAACGCCCGTCGTTTCTTGAAGGAGTCCCGCGAACAGAACGTTCTTGACTTGGCTGACTTCCCAGTCTCCTTTGTGGAGGCCGTCAAGATGCCAACTGCTTGCGTCGC--TTATTAGacaatttttccat---------------gttttat----------tctgat----tttaaatcaa--tgaaactttt
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18194   21405 323 +   823664 tttcagaacttgTGAAAAAGACCCTCGTCAAAGAATTCTCCCACAGAGTCTGCTTCTCCCTTGAACCAGTCACCGAGTGCCCCCGTGGATTCGAGCCAGAGAAGAACTCAACCAAGAAGCTCCGCTTCACCTGCATGCCACGTCACAGCAAGAATGCTCGCCGTTTCCTTAAAGAAGCTCGCGATGAGA---TTCTCGACCTGGTCGACTTCCCAGTCTCGTACATTGAGGCCATCCAGATGCCAACTGCCTGCGTCGC--CTATTAAAT-ATTTCCTCATGCAT-----------GTTTTACAACCAATAAAta-gtt----tttaattaaaattaaattgttt
i caeJap4.Scaffold18194 C 0 n 0

a score=-66135.000000
s ce10.chrX             3408582 192 + 17718866 TCACTAGA-A------TGATTTTTTTTCT---------CATCACTTCTAGAAAACA----------------------AA---------------------------------TACACATGTTGTAA-------GGATGTCA--------------------------------------------------------------------------------------------------ATCGAAA--CACAGC-----------------TT-------TGCACCAAT-AGTTTTTATTTACGCGTGTATTTAAGGCTTCGAAGGAGATGAT--AGTGCTT-GCAGTAAACACG------AAAATTAGTGATAATTATGAAAATCAATA--------TAATTTTAAGGAT--
s cb4.chrX              8487404 201 + 21540570 ccCTAGATAA------TCAGctgttttga-------------------aaagaaaa----------------------aattcttatCAGTTGC-------------------TACATTTGATGCAA---CTATGTATaata--------------cattt----------------------tctt--------------------------ttttcacttcaa---------------gtcaaaa--aa--aaattt-------------ca-------tgtaCCAAG-TAAGTTTGACTACGCGT-TAATGAAA-------------------AACACTC-ACAATGAGCACA------AATAATAATTT----TGAGATAA-AATat--------gataattaatttt--
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   539234 273 -  4500979 GCATtagt-a------ttattttttctgattttgacaTTATCAT---CAAATAGAAACATTCTGGAGAACTAAAAGCCAATACTCTTTGATTTC-------------------TTCATCTGACGTAACATCCGTGAATgcta---------------gttt----------------------tctgaa-----------aaacatcgAT-GATTGTTATTTGAACAGT-----AAAATCGTCGAAA--A----------------------TG-------TGCACCAAG-tttttttATTTACGCGTGTAATTAAGGCTGTGAAGGAGATGAT--AGTACTCGGTAGTGAGtaaa------aa-aacaa-------tgagaaaataatta--------gaaaatcGGTGAT--
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold630  5592547 343 + 20921866 tcattaaaaaaacgttctagttttcttca-------------------aaatgaaa-------aaaaaactgaaaa--agtgtcaatCTGTCACTAAATTAATAAAACAGACATCAACGTGAAGTAA-ATTTGTGGAAGACTACAGTTTTGACTGACGTCCACAAGAAAGTCAATTGACAGCATCCTCAATCATCGAATCACACCACCGG-----------Tgtaaattccaaaaaaaatttctaaa--aacggGACTTGCCAAAATGAACATG-------TGCACCaag-aatatttatttacGCGTGTACTTAAGGCTGTGAAGGAGATGAT--AGTACTC-ATAGTGAGCACAAAACATAATATCA--------AGAGGAAATAATTA--------AAACTTCGATCAT--
i caeSp111.Scaffold630  C 0 I 40
s caePb3.Scfld02_0      1827405 346 +  4147112 tctctagAAA--------GGTTTTTTGCAACAGAATTGAAGCAC----AAATGACA---GTTTAAATGACTACAAA--AAGATCACATTATCTC------------ACAAACACCGAAGTGATGCAACATTTGTGAGAAGCATCAAAAGAAGGTGATGTCT--------TTCAGCTG------TCATTCACCATTAGTTCATGCGTCagg-gctttttttttgataaatatatcacaattttcaaaactaaggGAAACTGTTCACACTAGGGGGCAGAAGTTGCaccaa--aatgtttatttacGCGTGTACTTAAGGCTTTGAAGGAGATGAT--AGTGATC-ATAATGAGCACG------AATATCAGTGA---GAGcagaaataatta--------aaaattcgATGAT--
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194  602173 157 -   823664 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tagctATAAATTACTTGTTATTTAA----------------CTTGAAA--CACAACGA---------------TG-------TGCACCatgctttttttatttacgCGTGTACTTAAGGCTGTGATGGAGATGACGAAGTAATT-ACTAT-------------AGAAAtagttt----tgagaaaaaaaatacaataattaaaaattaattttaa
i caeJap4.Scaffold18194 I 5169 C 0

a score=-14152.000000
s ce10.chrX             3408774 30 + 17718866 ACTTA--GAGGGCAATCAAAAAGCTTCTCGAC-------------------------------
s cb4.chrX              8487623 25 + 21540570 ATGTT-----TGCAGTTTGTAAGATGACT--A-------------------------------
i cb4.chrX              I 18 I 6
s caeRem4.Crem_Contig0   539533 27 -  4500979 ACTGC-----TGCAGTTTAAAACaagctttgt-------------------------------
i caeRem4.Crem_Contig0  I 26 I 6
s caePb3.Scfld02_0      1827762 31 +  4147112 ACATTA-AAACTCAAGTTGTGACATCATAGGT-------------------------------
i caePb3.Scfld02_0      I 11 I 6
s caeJap4.Scaffold18194  602330 58 -   823664 -----tagaatacagcaaaaaaacgttttgtttcTCATAATTCCATAGCcatatttgttttgt
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5592890 40 + 20921866 I

a score=1051327.000000
s ce10.chrX             3408804 1427 + 17718866  
s cb4.chrX              8487654 1435 + 21540570  
i cb4.chrX              I 6 I 23
s caeRem4.Crem_Contig0   539566 1438 -  4500979  
i caeRem4.Crem_Contig0  I 6 I 46
s caeSp111.Scaffold630  5592930 1375 + 20921866  
i caeSp111.Scaffold630  I 40 I 34
s caePb3.Scfld02_0      1827799 1442 +  4147112  
i caePb3.Scfld02_0      I 6 I 25
s caeJap4.Scaffold18194  602388 1390 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX             3410231 18 + 17718866 AAATTGGAAAATAAATTT
e caePb3.Scfld02_0      1829241 25 +  4147112 I
e caeJap4.Scaffold18194  603778  0 -   823664 C
e cb4.chrX              8489089 23 + 21540570 I
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=-1038.000000
s ce10.chrX             3410249 11 + 17718866 GAAAC----------TGGTTT
s cb4.chrX              8489112 15 + 21540570 GGGCCTTTG------TAACTT
i cb4.chrX              I 23 C 0
s caePb3.Scfld02_0      1829266 21 +  4147112 GAAACTTtggagaaatgattt
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold18194  603778 11 -   823664 ----------GAAAATGGTGT
i caeJap4.Scaffold18194 C 0 I 288
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=-19821.000000
s ce10.chrX             3410260 234 + 17718866 TTTG--TCTGAAAACGTATTTGGAACACTCGAGTCATTTAAAACAAG-----------------------------------TTTCCTTCTATCAAAAT---------------------------TAAATCTCTGTTAGAGTTGCACTGACA----ATAAGCTACTGAAAAGATGTTTGCATTCCGGTAGTATTAAAAATTCACGCATACGTTCAGGTTTTTTTCTACATTATTTGTT--GATAGTTTCTGAAAAAAAAGTTCGC-----------------------------TCAGTGTTTTTTTTAATGTTTT---------------ATCAAAT-------------------------AAAAAGCAT
s cb4.chrX              8489127 128 + 21540570 TGTA--------AAAGTAATAggtaccgt-----------------------------------------------------atttcttctaacGGTAT----------------------------------------------------------CGCACCCGATgcatcaattttgagct--------------gaattaac-----------------------tcctat-------gaaagat------ataagaGCTCAA-------------------------------------------AGTGTGTTGGGTGGGCTTGT---Atcaaag-------------------------gaaa-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1829287 341 +  4147112 ttcaatgcaaataaaatgatgagaaaCATAAAG---TTCAACAAATGCGCCCCCCTGGAAAACGCGAAAAATCCTCGGTTGAATCATTTTTAACGGAATTATTACAATTTGGAAATTATGATTTAATTATTCCTTTCGAAAGTTACAAAAGGGAAAGCAAAGCCTATCGATAGGCACTGAGTTATTGGTCTTTTTAGGAATTCAG-----------------------TGTTGTTTATTCAGAAAGTtc-----attggagcgcacttgTTGACTTGCttgttttctgatattttcctGAGTTATCTTTAATTCACTGCAGTAACCTGTTGAaacaaagttattttttgataatttgacaATGTGAAA-GCTT
i caePb3.Scfld02_0      C 0 I 72
e caeJap4.Scaffold18194  603789 288 -   823664 I
e caeSp111.Scaffold630  5594305  34 + 20921866 I
e caeRem4.Crem_Contig0   541004  46 -  4500979 I

a score=226.000000
s ce10.chrX             3410494 49 + 17718866 GAAACTTCAGCGAAAAGCTCACGCGAAATTATCTTTTTTGGAATTAAAA
s cb4.chrX              8489255 30 + 21540570 -------------------tacggtaactgttttcaattgaaattaaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1829628 72 +  4147112 I
e caeJap4.Scaffold18194  603789 288 -   823664 I
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=0.000000
s ce10.chrX             3410543 36 + 17718866 AATACAACTTAACACAAACCTAATAGAATAACATGT
e caePb3.Scfld02_0      1829628 72 +  4147112 I
e caeJap4.Scaffold18194  603789 288 -   823664 I
e cb4.chrX              8489285  0 + 21540570 C
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=-65.000000
s ce10.chrX             3410579 3 + 17718866 AGT
s caeJap4.Scaffold18194  604077 3 -   823664 ACC
i caeJap4.Scaffold18194 I 288 C 0
e caePb3.Scfld02_0      1829628 72 +  4147112 I
e cb4.chrX              8489285 0 + 21540570 C
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=-2807.000000
s ce10.chrX             3410582 64 + 17718866 ATTTCGAAATACTTTAAGCGGAACCTTTGTGGAGAATTTTCAAAAACTAATCCAATATTACAAT
s caePb3.Scfld02_0      1829700 61 +  4147112 atttcagaaaaatgtgaacCGAATTCATCTGATCAGTTTTT---CACTTAAGCCTGATGGAAAA
i caePb3.Scfld02_0      I 72 I 1
s caeJap4.Scaffold18194  604080 53 -   823664 ATTtccagat-ttttaa----aattcatcaaaaaaa-----aaaaaaaaaaaaaacaataaaa-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8489285  0 + 21540570 C
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=-460.000000
s ce10.chrX             3410646 1 + 17718866 -C
s caeJap4.Scaffold18194  604133 1 -   823664 a-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1829761 1 +  4147112 I
e cb4.chrX              8489285 0 + 21540570 C
e caeSp111.Scaffold630  5594305 34 + 20921866 I
e caeRem4.Crem_Contig0   541004 46 -  4500979 I

a score=474841.000000
s ce10.chrX             3410647 508 + 17718866  
s cb4.chrX              8489285 503 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   541050 494 -  4500979  
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold630  5594339 507 + 20921866  
i caeSp111.Scaffold630  I 34 C 0
s caePb3.Scfld02_0      1829762 503 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  604134 508 -   823664  
i caeJap4.Scaffold18194 C 0 I 19

a score=-11135.000000
s ce10.chrX             3411155 81 + 17718866 GATTTAGCTTTCCTATTAACCGTTTCACTTTGCACTTTTTCTGTTGCCAAAGCGTCTCACTAATACTTAAATATTTCA---------TCA
s cb4.chrX              8489788  7 + 21540570 ----------------------------------------------------------agaaatt-------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5594846 31 + 20921866 --------------------------------------------------------CAAACAATTTGTTTAGATTTCAAACTAACCG---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830265 17 +  4147112 --------------------------------------------------------TTATAAATATCT-----TCTCA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  604642 19 -   823664 I
e caeRem4.Crem_Contig0   541544  0 -  4500979 C

a score=-17638.000000
s ce10.chrX             3411236 131 + 17718866 ATGATTTTTACTATTTTTCGCACAATTGACAAAAAAACTACAGTAACAa------caagcgctacagtagttttttaaaggatcaatgtggttttcgctacgaaatactttaaatatgttgcgcaatatgaattttc
s cb4.chrX              8489795  91 + 21540570 -tgttttcca---------aCTCATTTAATCTAAAAACT---GTGATAATAtggcaaactgataaaacgtt---------------tgtgatatt---------atgctTAACagct---------tatcagttgac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   541544  39 -  4500979 -TGATCTTTA---------GCTTGAGCAATTTTAA-------GTGATAA------AAACTAA---------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5594877  38 + 20921866 ----AGTACA---------ACAGAAGTTCCTCTAGCAGTAC-GCGGCAA------CGA-------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1830282   0 +  4147112 C
e caeJap4.Scaffold18194  604642  19 -   823664 I

a score=-17086.000000
s ce10.chrX             3411367 140 + 17718866 ----------agaattttCTACTTTTGCAAGTGAAGACTAATTATTTTAAAGAAACAATTTATCTGAAAATTAGTATTGCAGCCATATTAAAATATAATGCAGCCATACGGCTTCAATTTCTAGTATTAAATAGTAAAATCACCGTGCAA
s cb4.chrX              8489886  91 + 21540570 aacttttccatGTTTTTGGCA------GGAACCGAGACAGATTAGCCTAAAGTTAAAAGTCA-CAGGGTCCtactattaca--------------------agttttacgg----------tagtttt----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5594915  22 + 20921866 -------------------------------tggaaacaaagaaatttgagaa-------------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830282  42 +  4147112 ----------GGAATTGTcta------caaaccaaaaaaaaaagaattgaaaataaaa--------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  604642  19 -   823664 I
e caeRem4.Crem_Contig0   541583   0 -  4500979 C

a score=32209.000000
s ce10.chrX             3411507 103 + 17718866 TTAAAAATATAAAAACTCACCGAGAACTACGGCAGT------TCCTCTAGCAGTGCGAGGCAAAGACGGGAACAATGCGGTTTGAGAGAATTCCGACATTCTG-CAAAA---------------A
s cb4.chrX              8489977 101 + 21540570 --------------acttACCCAAAACTACCGCAGT------TCCTCTGGCGGTTCTTGGAAGTGATGGGAATAGAGCAGTTTGAGAGAACTcggacattctg-aaaat---tgggttattttat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   541583 101 -  4500979 --------------ACTCACCAAGCACGACAGCGGT------TCCTCTTGCAGTTCGAGGCAACGATGGAAACAGGGCGGTTTGAGAGAATTCCgacattctg-gaaaa---tattatattttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5594937  56 + 20921866 ------------------------aactcCGACATTCTGAAATACTCTGAC-------------------TACTGGATAGTC---AAAAACttgga------g-aaaaa----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830324 104 +  4147112 --------------actcaccaagAACTACAGCAGT------TCCTCTAGCAGTCCGTGGCAACGATGGGAACAAGGCAGTCTGAGAAAACTCCgacatcctg-aaaaaattcaagaaatgttTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  604661 103 -   823664 TTATAGTTGTTGAAACTCACCAAGAACGACAGCGGT------ACCTCTGGCGGTCCGTGGCAACGATGGGAAAAGAGCATTAAGCGAGAACTCTGACattctgtaaaaa----------------
i caeJap4.Scaffold18194 I 19 I 10523

a score=-10997.000000
s ce10.chrX             3411610 34 + 17718866 TTGTAA-----AAATTGAGCAGGAATCCAAAAGATCGAA
s cb4.chrX              8490078 32 + 21540570 tttgaa-----gtgTCCAACGAAGGCTT--AAGGtctca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   541684 33 -  4500979 tttcaaaaaacgtatACAATTGACGC------GATCGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5594993  2 + 20921866 ------------------------gt-------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830428 12 +  4147112 TTTGAA-----GTTT---------GT-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  604764 10523 -   823664 I

a score=28599.000000
s ce10.chrX             3411644 111 + 17718866 GGAAG------------AAAAT----CAATAAAATCAAACGAGAGCAT-TGAGAAGA--AATAGTGACGACAGCGGGTGAGGAACTAATGAGGGTGCGGAAGGACAGCGGTCACTGGTCACTAACAAACA
s cb4.chrX              8490110 112 + 21540570 acaagaaaaaaaaacagaagat----cAATGAATCCGGACGAGC-------AAATGGAGAAAAGT----CCGATGGACGGCAAACTAATGAGGGTGCGGAAGGAC---GATCATAGGTCattaacaaaca
i cb4.chrX              C 0 I 182
s caeRem4.Crem_Contig0   541717 116 -  4500979 CCAAGAAC---------AAGAT----CAATAAATGCAAACGAGCCTAG-CTAAGAGGACACAAGTGAGGACAGTGAGTGACAAACTAATGACGGTGCGGAAGGCCATTGGACATTGGTCAGTAACAAATA
i caeRem4.Crem_Contig0  C 0 I 206
s caeSp111.Scaffold630  5594995  95 + 20921866 -----------------aaaat----caATGAAT-CGAGGGAGC-------AAAAGA---CGTATGAGGACGACAAGTGAGGACTTAATGAGGGTGCGGAAGGACTGTGGTCATCGGTCAGTGACGA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830440 102 +  4147112 -----------------AAAATGGGAAAATCAAT-TGAACGAGC-------ATAAGG---TCAGTGACGGAAAGGAGTGAGGAATTAATGAGAGTGCGGAAGGACAGTGGTCGGTGGTCAGTAACAAACA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  215457 105 +   823664 ------------gaaaaaaaat----cgattggATCAAACGAGCAAAGCCTAGAGAGAAAAGAGTGGCGAAAACGCGTGAGGAACTAATGAGGGGGTG---GGCCGCTCGACGACGG------ACAAACA
i caeJap4.Scaffold18194 n 10523 C 0

a score=0.000000
s ce10.chrX             3411755 1 + 17718866 G
e caePb3.Scfld02_0      1830542 1 +  4147112 I
e caeJap4.Scaffold18194  215562 0 +   823664 C
e cb4.chrX              8490222 182 + 21540570 I
e caeSp111.Scaffold630  5595090 0 + 20921866 C
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=-1219.000000
s ce10.chrX             3411756 24 + 17718866 TGCGCGCGGCC-------GAGATGGGGTTTC
s caeSp111.Scaffold630  5595090 13 + 20921866 ------------------GGGACgaggtggc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830543 28 +  4147112 TGT---TGACCCTGAGAGGAGACAGAGTGTC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  215562 24 +   823664 --CAAACGACCCT-----GAGAACGTATTTC
i caeJap4.Scaffold18194 C 0 I 95
e cb4.chrX              8490222 182 + 21540570 I
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=682.000000
s ce10.chrX             3411780 37 + 17718866 CTAGGCCGCAAAGATTGAACAACTGT--------------TTTCTTTGCTT
s caeSp111.Scaffold630  5595103 45 + 20921866 ctag------aaaaatgaataggtATGAGACCTCGACCACTTACTTCGCTC
i caeSp111.Scaffold630  C 0 I 28
s caePb3.Scfld02_0      1830571 32 +  4147112 CTAG------AATAATTGACATATGCG-------------TTTCTTCGTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  215586 95 +   823664 I
e cb4.chrX              8490222 182 + 21540570 I
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=-363.000000
s ce10.chrX             3411817 34 + 17718866 GAAATATATAAGTTTTTCG-----ACGGaattt--tataat
s caePb3.Scfld02_0      1830603 41 +  4147112 GAAAGGTTTCTGATTTGGGTTGAAACCAAATttaccaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  215586 95 +   823664 I
e cb4.chrX              8490222 182 + 21540570 I
e caeSp111.Scaffold630  5595148 28 + 20921866 I
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=-1359.000000
s ce10.chrX             3411851 90 + 17718866 tgaaat--tttctttttttt--------ttctaagaaaaaattattaatttGGTCGATCTATTTTTGTTGATAACGAAGAACAATGCGATAGTTATTTGT--------
s caeSp111.Scaffold630  5595176 91 + 20921866 TGCAACTATCAATTTTCTCCGA------TTCAAAGAACTGA-GGACAAACCTAACAATCGAT-----CGGTTACGTAAGAACAAAG-----GATATTTTCAgggagaa
i caeSp111.Scaffold630  I 28 C 0
s caePb3.Scfld02_0      1830644 93 +  4147112 taaaac--ttagACTTCATTGGTACGTTTTTGAAGGTATTA-GATTAAACCGATCCATCGAT-----TTGTTACGTAAGAacaatt-----gaagttttc--tgaaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  215586 95 +   823664 I
e cb4.chrX              8490222 182 + 21540570 I
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=289.000000
s ce10.chrX             3411941 3 + 17718866 GAC
s caeSp111.Scaffold630  5595267 3 + 20921866 aag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830737 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  215681 3 +   823664 gAA
i caeJap4.Scaffold18194 I 95 C 0
e cb4.chrX              8490222 182 + 21540570 I
e caeRem4.Crem_Contig0   541833 206 -  4500979 I

a score=-1138.000000
s ce10.chrX             3411944 4 + 17718866 GTGA-
s caeRem4.Crem_Contig0   542039 4 -  4500979 atga-
i caeRem4.Crem_Contig0  I 206 C 0
s caeSp111.Scaffold630  5595270 2 + 20921866 --ga-
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      1830740 2 +  4147112 --ga-
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  215684 4 +   823664 -GGAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8490222 182 + 21540570 I

a score=139798.000000
s ce10.chrX             3411948 235 + 17718866 AAAAAGTGA------ATAAGTGTTATTGTTGTGAGA-AA------GAGGAGGTCAATAGAAAACGGGGCC-CGCCGGC---TCGCCG----------GGTGGGAAAGCATTC---GACAGCAAGA----CGTGTTTTTCAATCTGCGACTCGGCGATTCCCATCATCACTCGA---CAATCGAGA--AACGGAGG----TTCACGCAAACAGAGGATCGGCTGTAAACTCCTCGTTGCTCATCGACCGCTTTTTTTATTATTAGCCGTCACTG----GAAAA
s cb4.chrX              8490404 257 + 21540570 GGAAAGAGA------ATAAGTGTTATTGTTGTGaga-aagaggaggaggaggtcaATAGAAAACTCGCCG-GCTCGGCCG-TCGCCGCCGGCCCATCGGGTGGAGAGCATTCGAAGACAGCAGAA----TGTCTTGTTTCGTCTGCGACTCTGCGATTGCCGCTGTCTATGAG---AAATGATGGGAAGAAAAGG----TTCACGCAAACAGAGGATCGGCTGTAAA--CCTCGTCGCTCATCGACCGCTTA-TTTATTATTAGGAGGACCCG--AGAGAAT
i cb4.chrX              I 182 C 0
s caeRem4.Crem_Contig0   542043 243 -  4500979 aaagagaga------agaagtgtTATTGTTGTGAGA-AA------GAGGAGGTCAATAGAAAACGAAGCT-GGCCGGC---TCGCCGCCGACCC-TCGGGTGGAGAGCATTCGACGACAGCAAAA----CGTCTTTTGATTTCTGCGACTACGCGATTGCAATGAACTCTAAAtacaaatgagaagaaaagaagg----ttCACGCAAACAGAGGATCGGCTGTAAA---CTCCTCGCTCATCGACCGCTTATTTTATTATTAGccgga----------aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5595274 244 + 20921866 agagagtga------ATAAGTGTTATTGTTgtgagagaa------gaggaggtCAACACAAAACGAGGCC-CGCCGGC---TCGCCGTCGACCCCTGGGGTAGAGAGCATTC---GACAGCCAAa----cctcttttcatttctgcgACTACCCGATCTCAGTAGACACTCAA---TAATGGGAG--AAAGGAGG----TTCACGCAAACAGAGGATCGGCTGTAAA---CTCGTCGCTCATCGACCGCTTA-TTTATTATTAGCCGTTGACg--tcgaaaa
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      1830744 242 +  4147112 aaaaaagaa------ataagtgTTATTGTTGTGAGA-AA------GAGGAGGTCAACA-GAAACGAGCCCGGGCTGGC---TCGCCGTCAACCTCT-CGGTGGAGAGCATTC---GACAGCAAAA----TGTCTTT--ATTTCTGCGACTACTCGATTGCAGTGAGCACTCAA---TAATGGGAG--AAAGGAGG----TTCACGCAAACAGAGGATCGGCTGTAAA---CTCGTCGCTCATCGGCCGCTTA-TTTATTATTAGCCGTCGTCGGAcgagaaa
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  215688 250 +   823664 --AAAAGGATTACACAAAAGTGTTATTGCTATTGAA-AA------ACG--GGTCAACTTGTAACGAGTCT-TGCCGGGAGATCGCCCTCGCTCCGGGAGTGAGTGAGAAAGA---GAGAGCAACAAAGTCGTCTTTTGACGTCTGCGACTTCCCGATTCACCCAAACACTCGA--------ACGA--AAACGAGGTTGATTCACGCAAACAGAGGATCGGCTGTAAA---CTCGCCGCTCATCGACCGCTGCATTTATTATTAGTCGCCATCG--GTGAA--
i caeJap4.Scaffold18194 C 0 I 766

a score=18055.000000
s ce10.chrX             3412183 138 + 17718866 ATCGATAA------ACCTGCGGGGGA------AGCTTT---GGGTGAAAAACACGTTTTTTTTTCTCGAACAACATGTCGAAA-CAAAACAAAATAAGAAGAAAATTGGTCGGGTTTTG---CAATAACTTT--TCGAATGAGAAATGA----------AACATTTTCT-
s cb4.chrX              8490661 142 + 21540570 ATCGATAGGGATTTGTGTGTGGGGGAAGAAAGAGTGATTGGGATGGAAAAACAAGTTC-----------AGAAGCA-----------ACGAAAATAAGACGAAAATTGGCACGGTTTCG---CAGTTTTTGT---CAAATAAGAAACACTCCAttcattcacttttttcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   542286 126 -  4500979 atcgataa------gtGTGCGGGGGA------AGTGAT-----GGGAAAAACAAGTTC---------GAACAAGCagttgaaa-atcaagaaaataagaagaaaattggCAT-GTTTCGCAACAATTCTTCC---CATTTGAAAGA-------------CGCATTTCGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5595518 122 + 20921866 atcgataa------atgTGCGGGGGA------AGTGAT------GGGAAAACAAGTAA---------GAAcaagaagttttcaaatttgagaaataagaagaaaattgg--t-gTTTCG---CAATTCTCaa--ggaaaaagggga-------------aacATTCCTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1830986 124 +  4147112 atcgataag-----aaTTGCGGGGGA------AGTGAT------GGAAAAACAAGTTA---------GAACAAGAAgtttgga---ttgaaaaataagacgAAAATTGGCCC-GTTTCA---CACTCGCCAGTTGCAACAAAGAGA-------------ATCATTTTCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  215938 766 +   823664 I

a score=66698.000000
s ce10.chrX             3412321  99 + 17718866 CGATGAGACAACTCACCAAGCACATGTGATTCATGTTG-CATACACG-----TTAAGGAGGGGCTGACTAAGCGAACTATAGCCTTATC-------GCAACAAAAAACGATT
s cb4.chrX              8490803 103 + 21540570 cgATGAGACAACTCACAAACCACATGTGATTCATGTTT-CCAATATggcagaaaaaagaggagctGACTAAGCAAACGTAAGCCGTATG-------GCaac-aaaaatgatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   542412  98 -  4500979 CGGTGAAACAACTCGCAAACCACATGTGATTCATGTTCACCAATACG------CAAAAGGGAGCTGACTAAGCAAACGTGAGCCTTATC-------GATAC-AGGGATGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5595640  95 + 20921866 CGATGAGACAACTCACAAACCATATGTGATTCATGTTC-CATATACG--------TCAGGGTGCTGACTAAGCAAACGAGAGCCTTATCG------GCAAC-AAAGATGAT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1831110  94 +  4147112 CAATGAGACAAATCACAAACCACATGTGATTCATGTTC-CGTATACG--------TCAAGGGGCTGACTAAGCAAACTATAGCCTTATC-------GCAAC-AAagatggt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  216704  97 +   823664 CGATGAGGCAACTCACAAAGAACGCGTGATTCATGTTC-------CG--------CAGAGAAACTGACTAAGCAAATGAAAACCTTATCGGCggtcgcaaaaaaaaataatt
i caeJap4.Scaffold18194 I 766 n 766

a score=8013.000000
s ce10.chrX             3412420 55 + 17718866 TTTTTCCTCCCTTTTCTACTTTTCTCGTAT-GAATTTGTGCAAACTAGAATATGAT
s cb4.chrX              8490906 44 + 21540570 -----------atttcTTTTCCCGCCGATG-TGACTTGAACAAAGTAGAACATGAC
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   542510 41 -  4500979 -----------TTTTCTTTG---GCCGAAT-ACAATTGTACAAAGTAGAACATGAC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5595735 45 + 20921866 -----------GCTTTTTCGTTCACCAACATTGAATTGTGCAAAGTAGAATATGat
i caeSp111.Scaffold630  C 0 I 2095
s caePb3.Scfld02_0      1831204 38 +  4147112 ------------tttttgagcaaacCAAAA------TGTGCAAAGTAGAATATGAT
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18194  216801 766 +   823664 I

a score=271.000000
s ce10.chrX             3412475 61 + 17718866 TC--CCCGTGAGTCACCGGAAGAGCTAAATTTTCAATATCAATATAT------------TCATTAATATAAAAAA
s cb4.chrX              8490954 63 + 21540570 TCCTTTTTTGACTcacaaaaagaaacattttctgGTAACCGGTACAT------------ATATTagtgacaaaaa
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   542555 67 -  4500979 TC--TTCTTGACTCACACGAG-----CCTTTTTACAAACCAATATATTTGtatcaata-attttattaattgaaa
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      1831246 64 +  4147112 TC--TTTCTGACTCACAAACGAA---GTTttatcccgaaaaaaatat------caatacaGCTCAACACAGAAAA
i caePb3.Scfld02_0      I 4 I 3328
e caeJap4.Scaffold18194  216801 766 +   823664 I
e caeSp111.Scaffold630  5595780 2095 + 20921866 I

a score=-951.000000
s ce10.chrX             3412536 1 + 17718866 G---
s cb4.chrX              8491017 1 + 21540570 a---
i cb4.chrX              C 0 I 62
s caeRem4.Crem_Contig0   542622 4 -  4500979 atag
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1831310 3328 +  4147112 I
e caeJap4.Scaffold18194  216801 766 +   823664 I
e caeSp111.Scaffold630  5595780 2095 + 20921866 I

a score=91.000000
s ce10.chrX             3412537 1 + 17718866 A
s caeRem4.Crem_Contig0   542626 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 2269
e caePb3.Scfld02_0      1831310 3328 +  4147112 I
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491018 62 + 21540570 I
e caeSp111.Scaffold630  5595780 2095 + 20921866 I

a score=0.000000
s ce10.chrX             3412538 57 + 17718866 CATGTTATTATTTAAGTCCAAAAGTATTTTTGAATAAAGAGTACTACAATCCAAACT
e caePb3.Scfld02_0      1831310 3328 +  4147112 I
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491018 62 + 21540570 I
e caeSp111.Scaffold630  5595780 2095 + 20921866 I
e caeRem4.Crem_Contig0   542627 2269 -  4500979 I

a score=273.000000
s ce10.chrX             3412595 61 + 17718866 ACATACTAAAAGCTTATAAA--AAATTGCTGACAACTTGGCTTCTCGAGATGT--------------TTCAATAGGA
s cb4.chrX              8491080 77 + 21540570 atgaattaaaaatttagaaattaatttaaagaaaaaaatgattacTGTGACGTACTAGAATTGAAGATTCAACAAGA
i cb4.chrX              I 62 C 0
e caePb3.Scfld02_0      1831310 3328 +  4147112 I
e caeJap4.Scaffold18194  216801 766 +   823664 I
e caeSp111.Scaffold630  5595780 2095 + 20921866 I
e caeRem4.Crem_Contig0   542627 2269 -  4500979 I

a score=0.000000
s ce10.chrX             3412656 133 + 17718866 ATATTCGAAAAACAAGTAGATCataaaaatttgtatatttaattttttaaaaCTGTTTTTCTTTCTCTAGAGCCAACATATTTGCAGGATTCAAGTGTGTGCAGCAATTCTGTGGAGTATGGCCAGTGGGAAA
e caePb3.Scfld02_0      1831310 3328 +  4147112 I
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491157   0 + 21540570 C
e caeSp111.Scaffold630  5595780 2095 + 20921866 I
e caeRem4.Crem_Contig0   542627 2269 -  4500979 I

a score=499.000000
s ce10.chrX             3412789 47 + 17718866 AATTTGAAATGTTTTTTCTGGCAAAAAAAGCTTCAATCG-GTGAT-CAA
s caePb3.Scfld02_0      1834638 49 +  4147112 aatgtgaaaattttctcctAGAGTAACTAATTCGAAGCATGTGATTCAG
i caePb3.Scfld02_0      I 3328 C 0
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491157  0 + 21540570 C
e caeSp111.Scaffold630  5595780 2095 + 20921866 I
e caeRem4.Crem_Contig0   542627 2269 -  4500979 I

a score=253.000000
s ce10.chrX             3412836 11 + 17718866 CTTTAAAAAAA
s caeSp111.Scaffold630  5597875 10 + 20921866 -CTTCAAACCA
i caeSp111.Scaffold630  I 2095 C 0
s caePb3.Scfld02_0      1834687 11 +  4147112 ACttaattcca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491157  0 + 21540570 C
e caeRem4.Crem_Contig0   542627 2269 -  4500979 I

a score=-923.000000
s ce10.chrX             3412847 59 + 17718866 ---------AGATTCTAAAAAATTAAGTT---------CACACGAAAACT---------TTTTTATCTGAAAAATAGCA-TTCAATA
s caeRem4.Crem_Contig0   544896 81 -  4500979 AGCTTTTAAAGAATTCGATAA----AACTGTAAGAAGATATTTAAATATCTGAATTAAAACTTCATATCatgca-aaaa-atcaaga
i caeRem4.Crem_Contig0  I 2269 C 0
s caeSp111.Scaffold630  5597885 55 + 20921866 ---------AAAATGTAGtaa----aatt---------taataaaatgCT---------ACTTtatatgagaga-aaaatttcaaca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1834698 67 +  4147112 ---------aattttcggtCACCTGAGTTTTCACGAAATAATAAAATGCT---------ATATTATATGAAAAA-AGGA-GTCAAca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  216801 766 +   823664 I
e cb4.chrX              8491157  0 + 21540570 C

a score=-7450.000000
s ce10.chrX             3412906 26 + 17718866 AAAAAAAATCATGATAAAAATGAACG------------
s caeRem4.Crem_Contig0   544977 20 -  4500979 tc-acttaacaaaataaaaat-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5597940 22 + 20921866 agaaataaatatatgggaaata----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1834765 20 +  4147112 ag-aataaata-atttgaaaaa----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615287 28 -   823664 ------aaacaaaataataatg----cagataaaaaca
i caeJap4.Scaffold18194 I 10523 C 0
e cb4.chrX              8491157  0 + 21540570 C

a score=123695.000000
s ce10.chrX             3412932 162 + 17718866 AAAATGGATAAACGTGAAATGA------TAAAA-----ACTCTAATTATTCTTTCTCGAGTTCTTCGCTTGATAAGAGGCAACACGATGCTTATGAACTCCGAGCATAACAACAGGGACGAAAAGTACTTTGAAAAACCAAAAGGAGAACAATGTTCCAAGGGCAACCTGAAA
s cb4.chrX              8491157 168 + 21540570 AAAGTAAACAAATATGAAATGATTATATGAACT-----GAGTTATTTATCCTTTCCAGAATTCTTAGCTTGATATGAGGCAACGCGATGTTTATGAACTCCAAGCATTACCACTGGGACGAAGAGAACTTTGAAGAACCAGAAGGAGAAGAGTGTTCCGAAAGcgacctgaaa
i cb4.chrX              C 0 I 340
s caeRem4.Crem_Contig0   544997 160 -  4500979 --agaatataaatatgaaatga------aaatt-----aaactactcgcttttttttgaattcttggCTTGATAAGAGGCAACACGATGCTTGTGGACTCCAAGCATCACAACTGGAACAAACATGACTTTGAAGAACCAGAAGGAGAAAAGCGTTCCGAGAGCGACCTGgaa
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold630  5597962 150 + 20921866 ---------aaaaatgaagtga---------tt-----ATATAACTAATTGTTTTTGGAGTTCTTGGCTTGATAGGAAGCAACACGATGTTTGTGAACTCCGAGCATGACAACAGGAACAAACATGACTTTGAAGAACCAGAAGGAGAACAGTGTTCCGAGAGCAACCTGAAA
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      1834785 150 +  4147112 ---------aaaaacgaaatga---------tt-----ATGCAATTAGTTGTTCTTAGAGTTCTTGGCTTGGTAGGAAGCAACACGATGTTTGTGGACTCCAAGCATTACAACAGGGACAAACAGAACTTTGAAGAACCAGAAGGAGAAGAGTGTTCCGAGAGCAACCTAAaa
i caePb3.Scfld02_0      C 0 I 75
s caeJap4.Scaffold18194  615315 160 -   823664 ------aaaaaatattaaattg------aatttttcaaaaactaatcatttttgctctgattttttgcctgGTAAGAAGCGACACGATGCTTGTGCACTCCGAGCATCACAATTGGAACAAACAAGACTTTGAAGAACCAGAAGGAGAACAGAGTTCCAAGAGCAATCTGCA-
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX             3413094 37 + 17718866 TTTTGCAATATTCAGACCACTAAGACACCATTGATTT
e caePb3.Scfld02_0      1834935 75 +  4147112 I
e caeJap4.Scaffold18194  615475  0 -   823664 C
e cb4.chrX              8491325 340 + 21540570 I
e caeSp111.Scaffold630  5598112 36 + 20921866 I
e caeRem4.Crem_Contig0   545157 61 -  4500979 I

a score=157576.000000
s ce10.chrX             3413131 175 + 17718866 TACCTGAACATCATGTTGCACACAGCCCGTTGTGATTTCCCAATTAGTCCCGATAATTCTGACAGCTTGTTTGGCAAAGTTTTCAGGGGTGACAACGAAGATATTGTTCGCTTCTTCAGCTTCATACGAGGCGACCTTGGTAGCAACGAGCATTGGAATGAGACACTGGA-----AAAAT
s cb4.chrX              8491665 175 + 21540570 TACCTGAACATCATGCTGCACACATCCGGTAGTAATCTCCCAGTGGGTTCCGATAATTCTGACAGCTTGCTTTGCAAAGTTTTCTGGAGTTACCACGAAAATATTGTTGGCCTCTTCGGCTTCATACGATGCTACTTTTGTGGCGACCAGCATTGGGATAAGGCACTGAA-----ACAGT
i cb4.chrX              I 340 C 0
s caeRem4.Crem_Contig0   545218 180 -  4500979 TACCTGGATATCGTGTTGCACACATCCAGTGGTGATTTCCCAAGTTGTTCCGATGATTCTGACGGCTTGTTTTGCACAATTTTCAGGAGTGACCACGAAGATGTTGTTGGCCTCTTCTGCTTCGTAGGAAGCGACTTTGGTTGCAACGAGCATCGGAATGAGACACTGAAAATCGACAGA
i caeRem4.Crem_Contig0  I 61 I 2773
s caeSp111.Scaffold630  5598148 171 + 20921866 TACTTGAATATCATGCTGAACACAACCAGTAGTGATTTCCCAAGTTGTTCCGATGATTCTGACAGCTTGTCTGGCAAAGTTTTCAGGAGTGACCACAAATACGTTATTTGCTTCTTCAGTTTCATATGAAGCAACTTTGGTAGCAACGAGCATTGGAATGAGACactaaa-----a----
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      1835010 171 +  4147112 AACCTGAATATCGTGTTGAACGCATCCAGTAGTGATTTCCCAGTTTGTTCCAATAATTCTGACAGCTTGTTTAGCAAAGTTTTCTGGAGTGACAACAAACACGTTATTAGCTTCTTCAGTTTCGTATGAAGCAACCTTAGTGGCAACTAGCATTGGGATGAGGCACTGAA-----A----
i caePb3.Scfld02_0      I 75 C 0
s caeJap4.Scaffold18194  615475 164 -   823664 --------CATCGTGCTGCACACATCCAGTGGAAATTTCCCAA---GTTCCGATGATTCGAACAGCTTGCTTGACAAAGTTATCAGGAGTAACAACGAAGATGTTGTTGGCCTCTTCTGTTTCGTAGGAAGCAACTTTGGTCGCGACGAGCATTGGGATGAGACACtgga-----aaatt
i caeJap4.Scaffold18194 C 0 C 0

a score=-430.000000
s ce10.chrX             3413306 5 + 17718866 GAATA
s caeJap4.Scaffold18194  615639 2 -   823664 aa---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1835181 0 +  4147112 C
e cb4.chrX              8491840 0 + 21540570 C
e caeSp111.Scaffold630  5598319 0 + 20921866 C
e caeRem4.Crem_Contig0   545398 2773 -  4500979 I

a score=-14694.000000
s ce10.chrX             3413311 125 + 17718866 AACTTACACTTGAGTTTTTTTTTAAAGTTTGTGAAGAAAGATTTTGAGTTAAAATACAATACGTTTAACAATAAATTGAATCAGTTCTGGCAAAATCATTACATGTAACTGGTTACGTTTAGACG
s caeSp111.Scaffold630  5598319  70 + 20921866 ----------ataggttttt-----------tgaggaaaCA-------ATGATATACAGTTAGTTTAA-------------CAGTCCTGACAGAACAACTTGACATTACTA--------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1835181  54 +  4147112 ----------TGATTTTATT-----------CGTGGCTCTA-------TTCATTGTCG---CGTTTTC-------------CAAGttataagaaacaa---------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615641  68 -   823664 --------------tttcaa-----------cGAGAAAAAG-------TACTATAACTGTGAGTTTAACCGCTGTTTCCTGAGGTTTTCTCAAAGTCCCT-------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8491840   0 + 21540570 C
e caeRem4.Crem_Contig0   545398 2773 -  4500979 I

a score=-36172.000000
s ce10.chrX             3413436 169 + 17718866 TGCGACATTTAAATTAAAAACTCCGTTGTTGTAAGTATTAATATATACATTTTATAGA----------ATACAAATTTTCAGATAAGCATGTCATTTGACAGCTCGTTTTTCGATTAGGTATCTACAATTAT--TCAAAATGCAAGAACACAACT----CAAAAGCTTTCTGAAAGTATTTCAGT
s caeRem4.Crem_Contig0   548171  62 -  4500979 TGAGACACTGAA------------------------------------AATCGACAGATGAATACTTCACATAGCTTTACGGAT-------GC-----------------------------CT---------------------GAGCACCACT------------------------------
i caeRem4.Crem_Contig0  I 2773 C 0
s caeSp111.Scaffold630  5598389  26 + 20921866 -----------------------------------------------------ACAGA----------ATAAACCCCTCAAAAT-------TCAGT-----------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1835235  21 +  4147112 -------------------------------------------------------aaa----------acatgatctttcgttt-------tc--------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615709  91 -   823664 ---------------------------------------ACTCTGCTGTTTCATCAAG----------ACTAGATTCTGAGCTT-------AC----------------------------TGTACAATTGGCATTTTGATGCACAATCGCAGTGAGACCAACAGCCTACTGTAG----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8491840   0 + 21540570 C

a score=-9662.000000
s ce10.chrX             3413605 76 + 17718866 GCATTTAAGGCTGTTTAACGAAGGCTCTATATATTTGAAATTTTGAA----TTTCAATTTTGAATGCCTTGAAGGAATAT
s caeRem4.Crem_Contig0   548233 20 -  4500979 -------------TTTAA--------------ATTTGATATTCCGCA---------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1835256 16 +  4147112 --------------ttta--------------aTGTGAAAAAAT------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615800 29 -   823664 ----------------TA--------------GCACGGAATTGCGGAGGCATTTCTACC---------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8491840  0 + 21540570 C
e caeSp111.Scaffold630  5598415  0 + 20921866 C

a score=-15067.000000
s ce10.chrX             3413681 62 + 17718866 TTAAAACGTATTGGACAAT---AAATCGGTAATTGTTAAGATTTAAATTTAAAGTGTACCTATTG
s cb4.chrX              8491840 36 + 21540570 -----TCATAAtgaataattcgaaa-------------------atttttcaaatgtatc-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   548253 30 -  4500979 -----ACATTGTCCACCAT---AAA-------------------ATGTT---AGTGAAAT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1835272 14 +  4147112 -----CTAAAGCCGGCACT----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615829 22 -   823664 --------------------------------------ATATTCATATGTGAGCTGTATC-----
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5598415  0 + 20921866 C

a score=295684.000000
s ce10.chrX             3413743 550 + 17718866  
s cb4.chrX              8491876 521 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   548283 528 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5598415 526 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1835286 534 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  615851 484 -   823664  
i caeJap4.Scaffold18194 C 0 I 654

a score=150114.000000
s ce10.chrX             3414293 429 + 17718866  
s cb4.chrX              8492397 387 + 21540570  
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   548811 532 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5598941 535 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1835820 516 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  616989 489 -   823664  
i caeJap4.Scaffold18194 I 654 C 0

a score=-3917.000000
s ce10.chrX             3414722 11 + 17718866 ACAGTTGGTGA
s caeRem4.Crem_Contig0   549354  7 -  4500979 GTG----GGAA
i caeRem4.Crem_Contig0  I 11 I 1
s caeSp111.Scaffold630  5599476  6 + 20921866 GC-----GCAA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      1836336 11 +  4147112 gtgTTTAGCAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194  617478  6 -   823664 ----ttggCT-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8492784 42 + 21540570 I

a score=14365.000000
s ce10.chrX             3414733 105 + 17718866 CAAGAC----AAGAATGTAATAATTTGGGTCAGAAAATGCA-----------------GGAGATGAGAGAAATGTAGCAAACATTGACA-----CAGATAGAAAAC-CTTTTATGAGTAAGAGTAA---GA---AGAA
s cb4.chrX              8492826 105 + 21540570 TAAAAC----------------AAAGTGGTAGATTTTTGCATTGATGAACGATAT---GAAAATCGCGGAGGAAAGACG----GTGACA------GGATAGAAAAC-CTTTTACGAGTACGAGTAAGTCGG---AGAA
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0   549362 106 -  4500979 ------------------------CGTGGCGAAATATTTGATCAACGGAAGACAGACAAAGAATCGGTGTAAAATGACGAA-AGTGATGGTCGACGGATAGAAAAC-CTTTTATGAGTACGAGTAA---GA---AGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5599485 121 + 20921866 TAAAAcgacgaaaaatg-agagaaatcgGTCAGACATTGTATTGAtgaaagaaa----ggaaataGGTGAAAAGTGAC-----GAGACAGTCAACGGATAGAAAAC-CTTTTATGAGTACGAGTAA---CA---AGAA
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      1836350 124 +  4147112 tgaaacaaagaaaaaagttgaaaaatcggtCAGAAGTTGTATTGATGAAAGATA----GGAAATAGGTGAGAAGTGAC-------GACGGTCAACGGatagaaaacgtttttatgAGTACGAGTAA---GATGCAGAA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194  617484 100 -   823664 -------GAGGAAAATCTAATAAAAAGAGctaaaaaccaaa-----------------caaaataAGAGGAGGGAAACGTATCGggaag-------aattgaaaaa-atgcaatgtagaagaagaa---ga---agga
i caeJap4.Scaffold18194 C 0 I 2498

a score=39854.000000
s ce10.chrX             3414838 317 + 17718866 CAGTAGCCTGCA-------GAAAGGAGGATAATGAGCGGAATGATCCAAGGCCGCGTGTCGG------C------GCACACAG-----------------------------------GAACT----------------------------------GTGTGCGGATGACCTCG---TCGTCCC---------TCCATTTTAG------G-------GGGGAAAATGGGGGGGGGGGGGACGGTCAGATTGATAGTTTTGGAGTGTGTGTGTGGAAACGGACGTTGTC--C------TATATGACGAGA-------AGAATGCAATCACCAGCGGCAACAGCATACAGTGGAGATTGGTATATGAAATGTTTGACGCAACAAGTGACCAAGTGTAAAAAGATATTTCTCGTTCTTTTATTGGATT--CGTAATACTTATTGTCTGAA-
s cb4.chrX              8492931 325 + 21540570 CGG-GGCCAAT-------------TCGGATAATGAGAAAAGTTATCCAAGGCCACTCTTGCGGACGTACAGACAGGCGGCTAG------------ACACACCAACTTG-GAGTGTGTCGGGCGTCTTTCTGAAGCCGACCAATAACA----------GCGTACGGATGACCTC------------------------GCGCAA---CTAG-------GGACAGGA------GACGATATGC----------ATAGTTTTGTGG------TGGGGATATTCTGACCGTCCTAGttgtgaagaagaaaaagataaagaaGAATGCAATC-------AGAA-AGCAAACAG-------TGG--TATGCAACAGTTG----GAAAAGTGACCAAGTGTAACA--------CCGGCCATTTTATTGGATTTGTGTAAtggttgtt-tttcaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   549468 366 -  4500979 CGG-GGGCAACG-------GAAAGGAGGATAATGAGTGGAATGATCCAAGGCCGTCCGCGCGCGCGTACAAACGAGTAGACAGTAAGTGAGCGGAGCGTGTGTATGCGTGAATGTGT-GAGCGTATACCAAAA---GAAATATGTCA----------CCGCACGGATGACCTCG--TTGATCGT---------GTCTGTTCTA---CTGG-------GGCCAAGAC-TGTGGGGGATAGACAG----ATTGATAGTTTGGTAT------ACAAGATATGGTGACTGTC--AAATGT-AAGTTGAGAAAG-------AGAATTCAATC-------GAAACATTGGACAGTG--GATTGG--TATGCAATGTTTG----AAGAAATGGGCAAGTGTAACATGATGTTTCTCGACATTTTATTGGATT--TGTAatacttgtt-tttcaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5599606 322 + 20921866 CGG-GGCCAGCAACGGGGCGAAAGGAGGATAATGAGAGAAATGATCCAAGGCCGTCCGCACA------CCTACAGGCAGACAG-----------------------------TGTGT-GAGGA----------------GTGTGTCAGCGTCACCCCCCGTACGGATGACCTCG--CTCATCTC---------TTGAGGCTAAAACCTAG-------GAAGAAAA-------gggggggACAG----ATTGATAGTTTGGTG-------TGCGGATATTGTGACCGTC--A------tagttgagaaaa-------agaatgcaaTC-------AAAGCATCGTACAGTG--GATTGT--TTTGCAGTGTTTG----AAGAAGTGACCAAGTGTAACACTGTATTTC---CTATTTTATTGGATT--TGTAATACTCGTT-TCTGAA-
i caeSp111.Scaffold630  C 0 I 453
s caePb3.Scfld02_0      1836474 367 +  4147112 CGG-GGCCGGTA-----GAGAAAGGAGGATAATGAGAGGAATGATTCAAGGCCATACGGTCG------CATTCAGCCAGACAG----------------GCTAGCGTT-GTATGTGG-GAGAACCT-CCAAAG---AAGGGATGTTA----------TCGTACGGATGACCTCGCTCTCATCTCTGTTCTACTTTTTGGATAAAACCTAGAAAACTAGGAGAAAA--AGTAGGAGGGAGGCAAGTGTACTAACAGTTTCGTGT-ACAGATACGGATATTGTGGCCGGC--C------TAGTTGAGATGA-------AGAATGCAATA-------GAAGCATCAGACAGTG--GATTGG--TATGCTATGTTTG----AAGAACTGACCGAGTGTAACACTGTGTTTCTTGCCATTTTATTGGATT--TGTAacacttgtt-ttgaaa-
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194  617584 2498 -   823664 I

a score=-10299.000000
s ce10.chrX             3415155 51 + 17718866 GTTCCCACAGTTCCATTGAA-CTAAATCTGAAGA--TTATGCAAACCAGTTTGT---------------
s cb4.chrX              8493256 44 + 21540570 --------aatt---ctgca-------CT-------TTCTAACAAAAACTGAGAAGAcaggttttttgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   549834 54 -  4500979 --------agtg---ttgAAGGGGCGGCtgaagaagttttgaaaagcatttcaaaaacag----tggGT
i caeRem4.Crem_Contig0  C 0 I 55
s caePb3.Scfld02_0      1836842 28 +  4147112 ---------gtg---ttgaa-GAGAGGCTGCCGAAGTTT-----------------AC-----------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I

a score=-1395.000000
s ce10.chrX             3415206 26 + 17718866 TTTTCTACCACGTT-TCAAGTGTTAAA
s cb4.chrX              8493300 27 + 21540570 tgttccaGCAGTTTATCGAGTGTCAGA
i cb4.chrX              C 0 I 1788
s caePb3.Scfld02_0      1836870  3 +  4147112 --TTC----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I
e caeRem4.Crem_Contig0   549888 55 -  4500979 I

a score=131.000000
s ce10.chrX             3415232 64 + 17718866 AAAAAACGAATCCCAAGTACTCTTAAAATGTAATAACTATGTACTAAAAAATGTCATTTATTTA
s caePb3.Scfld02_0      1836873 57 +  4147112 ---AGATGATTTCT---TATTCTGGCAACTTGA-ACATATGTTTTTAGAGGAGTAAtgtttttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e cb4.chrX              8493327 1788 + 21540570 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I
e caeRem4.Crem_Contig0   549888 55 -  4500979 I

a score=-20468.000000
s ce10.chrX             3415296 398 + 17718866 TTTACTCTAATACGTTTTTGTTTACCTTGTATTGCTGGTAAAAGTAATGAGATTACTACATGAACCTGAAAATAAAACGTATGCCAA------AAAGGTCTA----------TTAAAGTTTTTTGTGTCTACCTGGAAAATATCAATAAACCTCCGTCTATTTGATTCAGAATAATTAATTTCTATCTGCATTGGGAATATCTTTGAAAATTTTTATTTAAATTCAGAACTTATTTTATAGATTTTGTTTCAACTTAAAAATGAACTAACTTG------CAAGCTGTCACAGTTACACATTATTTTGGTTTTTGGATGATTTTTTTAATAA--GTTAGGG----------GAGTATGTTCTTAAAAACTGATTCGTTCAACAAGAAACTTTGAATGACCTGCACCTGCCTGGGAGTTCTCT---CCTAAAT------GCAA------
s caeRem4.Crem_Contig0   549943 184 -  4500979 --ttttcccaaacattttt-tt------------cttttgaatgaaaaa---------------------actagaatgttttgtca------aaa----ta----------tcaggaa-------------aatagaatttttggaGAACTaaagtatagtttttt--ga--------------------------------------------------------------------CGAGTATTTTTAG------------------TTG------CAGAGTGTC-------------------------------------CACTAAcgat---------------gaaaatgt-------------------caaatataCAGTTCAA---------------CTGCAAGCCTTTTT--CCCGGAT------AAAA------
i caeRem4.Crem_Contig0  I 55 C 0
s caePb3.Scfld02_0      1836930 348 +  4147112 ----------agtgtttttgtT------------CTGATGAAAGACAAG-----------------TAGTACTACAACGTTTTTCGATCTATGAAA----TAGTACGAACGTTCAAGAAGTGTTGCGAgagtaaaaaaagtttaagaAAATAATCATATATTCGTTT--GAACTATCA--TGGTATTTATATTG-------TCTAActagtttttatgaaaatcaaaattggatCTAGcagggttttttttg------------------ttgaatgaaCAGTATATAGCTTTCTCG----ATTTAGGT-----AAAGATTCAGGTAATAACAGTTAGGTGaatctttccaaaaatgttcctTAGA---GGTTttgacaaaaagaaattccaa---------------TACTGAACATTctgaacttgaattttttcaaaagtgtag
i caePb3.Scfld02_0      C 0 I 65
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e cb4.chrX              8493327 1788 + 21540570 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I

a score=-561.000000
s ce10.chrX             3415694 115 + 17718866 AAGCAGACGAAAG--GTAGGTAAGAAGGCGCAAACGAGACACGTGCGCCTTGAAACACGTGTTTTTAGTT----CAATTGAAAGCTCAATTAGGTTTCTTTAGCACCGTAAAATCTTCAAC
s caeRem4.Crem_Contig0   550127  81 -  4500979 CAGCTAACGGAAACAGTGAATAAG-------------------------------------TTTTCAATAACCACAATTCAAAG---AACTATTGTTGTTTCAAACATCAAAACActcaaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1837278  65 +  4147112 I
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e cb4.chrX              8493327 1788 + 21540570 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I

a score=-10579.000000
s ce10.chrX             3415809 217 + 17718866 ATGTTTTCGATACAAAACTTG--CAAAATCAGGTGCACTACCATATTCTGTTTGCCAGTAAAAAATAT-----------TTCTAAAAATGTTTGAAAAT-TAAAATTGAAAAAGTTT--AGATAAACGTTG---------ATAAATTTTAAAAACAATTTATTTTATCTGATTGTAAAGTGTCAGATCAAATTGGAAGATACGCCCAAATAAAAAAAGTTGGAACTACATATTTTCCATCTA
s caeRem4.Crem_Contig0   550208 181 -  4500979 ---------atgtaaaaatgaatCGGAATTTGAT--CTTATCTTattctttttataaaaaaataccttgagattttttcttttgacatTGTTTGATGATCCtaaacttgatttttctgtAGATAAGAGGCG---------Gtaa-----------aactttggttttttgatt------tgcaGAAT----------GATCTAT--------------TTGTACCTGTatgtttcttaattt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1837343 133 +  4147112 -----------------atga-----------------------------tttcaaaacgACGGTTTTGAAATTGCGTGTTCACAAAATGT---------CCGAATTTCAACggtccaaagaaaaaaaaagtttcatagCGCGG-----------AATTTATATTCGTTAATT------TTTCCGAT----------GGTGCCC--------------TTTCCcctaca-------------
i caePb3.Scfld02_0      I 65 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e cb4.chrX              8493327 1788 + 21540570 I
e caeSp111.Scaffold630  5599928 453 + 20921866 I

a score=-1790.000000
s ce10.chrX             3416026 98 + 17718866 --CTTCCTATATCTATAATTAGTATTTTTGATATTGTTCTTAGCAC-------CCTTGTAACCATT-CTAAATGTTAATGCCCCAATCC-----CCCTTTACTTCTGCTAATA--
s caeRem4.Crem_Contig0   550389 99 -  4500979 --tttctttttgtcacaACCCTTGTTTCAGTTATGTGCTTTTGGCC----TTCGAATATGACCATT-CCAAAAG-------CCTAATCCAAAGATAGATTACTTCCGTGCTGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5600381 88 + 20921866 cctctcaattttttata--tattctTTTGGTTATGTTTCATTGCACTCAATTTCAATATATCCATTCCGAATAT-------CCTAATCC---------CTGTTTCT---------
i caeSp111.Scaffold630  I 453 C 0
s caePb3.Scfld02_0      1837476 92 +  4147112 -cttt---ttttttaga--tcttcTTTTAGATATGTGTATTTGCACACTGCTTCATCATAACCATT-CGACAAG-------GATaatcc---------cttttttttggaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e cb4.chrX              8493327 1788 + 21540570 I

a score=41869.000000
s ce10.chrX             3416124 276 + 17718866 AACTTCCTCTCCC-AGCAACATGAATGAACTAGA--------TAAGCCCAAAGCTTAAAA--AATTAATAAT------AGCAGAAGAACATTAAATCCTTTG-AATGTGATTCCCTAA--ATCACATCATTTACT--TCGT-GTATTTTCTAGGAATTGTCCTCCTGAAATAATCCCTTTCTGTTTAACTAC-------TAAATTGT-----CATCATAAA-----CATCA-CAGTCGCCGTCCTTTGCAGAGTGACCAAA------------------------ACGATATCATTGTGAAACCCTAAATATGAATTTTAATACCATAAAAATCAAAAAAC
s cb4.chrX              8495115 293 + 21540570 AACTTCCTTTATAGGGGatcacaacaaaaaaagaatagtGGATTAGGcgaaagctcaaaaatatttgataaTGTACTAAGCAGAAAAACATTAGATTTCCTA------GCTTCCTAAGATATAACATCACTCTC---AAATCGCTGTTTCTAGGAATTC---TTCTAAAATAATCC--TTGATTTTAACAAACTTCGAGTTGTTCTC-CACGTATCATTTT---GACATCA-TAAT------------CCAAAGCATC--ATTTTAATCGGCAGATCTGACTTCGACGTTTCCATTTCGAAACCTTATAATTA--------------AAGAATCAGACA-C
i cb4.chrX              I 1788 C 0
s caeRem4.Crem_Contig0   550488 231 -  4500979 --------------AGGATCATAACAAGCGTTGA---------TAAGCTaaagctcaaaa--aattaataatgcACTAAACAGAAAAACACTAAATCCTTTC-GTTGTGCTTCCTAAG--ATAACATCATTCTT---CTAT--TCAATTCTAGGAGTTG---TCTTAAAATAATCC--TTTATTTCAACAAA-------TGGATTTT-CAC-TATCATCAT---TTCTTTG-CAG---------------AAAGCa-----------------------------acgttttcattttgaaaccttATGATT---------------AAGAATCAAACAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5600469 262 + 20921866 -ACTTCCTTTCTAAAGGATCATGATAAACATAGA--------TTGGGCtaaagctttgaa--aattaataatgTACTGAGCAGAAGACCATTAAATCCTTTTGATTGTGTTTCTCAAG--ATAACATCATttgtt--tcat--cttcttctcagaaTAG---TTCTAAAATAATCC--TTCATTTTGACAGT-------TGGATTCTAAAA-CATCATCGACTATTCATCATTTGTTTCT------TGCAAACGAAT---AGATAAA------------------ACGTTTTAGATCTGAAACCCTGCGTTC---------------AAAAACC-------
i caeSp111.Scaffold630  C 0 I 34
s caePb3.Scfld02_0      1837568 265 +  4147112 cacttCCTTACTAAAGGATCATAACAA--ATGGA--------CTTAgccaaagctcaaaa--aattaataatgaACTAAGCAGCAGAACATGAAATCCTTTTAGATGTGATTCTT-AT--ATAACATCACTTTTCCACCAT--TCGCTTCTCagaatta---ttctgaaataatcC--TCTATTTCAACAAC-------TAGATTTT-CAA-CATCATCTA-----CATCA-TTGTTTCC------TGCAAAAGGATCTAATCTGAG------------------ACGTTTCTAAACTGAAACCCTATGCTC---------------AAGAATCAAAAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I

a score=-8330.000000
s ce10.chrX             3416400 66 + 17718866 TAGTTCACGACACGGGCTACGGATTTCGAGGAGTTCCTCGAAACTACAAAAGAAACAACAAAAAAG
s cb4.chrX              8495408 37 + 21540570 TAAATTATCAAAACAGTt-----ttatgttc--------------aaaaaataaac----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   550719 46 -  4500979 TAAAATCTAGAACATGTT----GCTCTGTTCATTTTCT------TAAGAATTGGAC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1837833 28 +  4147112 ----------------------TTTAtgatggaaattt------tcagaatcggaT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e caeSp111.Scaffold630  5600731 34 + 20921866 I

a score=-2794.000000
s ce10.chrX             3416466 58 + 17718866 TCGCTCAAGCGTCTCACGATGCTCCACGCGGTGCCATTCACTATTGTTGGTAAACA-CT
s cb4.chrX              8495445 35 + 21540570 tc-------------aTTGTGCTCCAGTTGGCGCGATTC----ATtatggtt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   550765 48 -  4500979 TCGGTAGAG------GTTTTCTTATGGGTGGTGCCATCT----TCTCTCGTAAACA-AT
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold630  5600765 52 + 20921866 TCGTTCGAG-----CGTAGCGTTCCTGCCCGTGCCATTCAT--TTTGTTGTAAACATGA
i caeSp111.Scaffold630  I 34 C 0
s caePb3.Scfld02_0      1837861 52 +  4147112 TCGCCGAAC-----CGCAACGTTCTTGTCGGTGCCATTCAT-ATTCTTTGTAAACA-AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I

a score=-4126.000000
s ce10.chrX             3416524 36 + 17718866 GCTCTCAAACTGTGACTTGTACCTGATATATTATAG
s cb4.chrX              8495480 16 + 21540570 ---------------ttcaaaatgaaaa-----aga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5600817 14 + 20921866 --------------GCTTGTGATTAACA--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1837913 14 +  4147112 --------------GCTAATGATCAAGA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  617584 2498 -   823664 I
e caeRem4.Crem_Contig0   550813 42 -  4500979 I

a score=-1453.000000
s ce10.chrX             3416560 14 + 17718866 AATTAAAAAAAAAC
s cb4.chrX              8495496 14 + 21540570 aatctaaaaaccac
i cb4.chrX              C 0 I 22
s caeSp111.Scaffold630  5600831  9 + 20921866 -ATC----AGATAC
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      1837927  4 +  4147112 ----------ACAT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194  620082 14 -   823664 AGtaaataacaaac
i caeJap4.Scaffold18194 I 2498 C 0
e caeRem4.Crem_Contig0   550813 42 -  4500979 I

a score=11191.000000
s ce10.chrX             3416574 51 + 17718866 GAAAAACGAAAAAACAAACAAAATGC------AATA----AAGTTTTATTTCCTTCGAAA--A
s cb4.chrX              8495532 51 + 21540570 ------aacaaaCAAGAACATATTTAcagcacaaaa----aagttttatttccTCCGAAA--A
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   550855 36 -  4500979 ----------------Gacgaattt-------aaaa----ataatttattctttttgaaagta
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold630  5600850 43 + 20921866 --TAAACACAAAGAAGCACA------------AAAT----AAGTTTTAtttccttcgaaa--a
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      1837941 41 +  4147112 ----gatataaaaatataca------------aaat----aaGTTTTATTTCCTTCGAAA--A
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194  620096 48 -   823664 -aaaaaattgaaaataaata------------aaaaattcaagttttatttccttcgaaa--a
i caeJap4.Scaffold18194 C 0 I 50

a score=-8194.000000
s ce10.chrX             3416625 39 + 17718866 --TAAAGGTTTGAAACATGAAAAA----------TTGATACTCTCCGGCTC
s cb4.chrX              8495583 25 + 21540570 ---ATATTATCAACATACcacgaa-----------------------aaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   550891 42 -  4500979 ---aTGCATTTGAAACTCGacaaatttgaatgaattatTG------GAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5600893 31 + 20921866 ----aatattttacaCACCACAAA----------ATAGAT------ACTCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1837982 35 +  4147112 TAGGCAAAATTCGGACACGACAAA----------TTAATA------ACGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  620144 50 -   823664 I

a score=-27713.000000
s ce10.chrX             3416664 199 + 17718866 TGGTTAA--------------------AATACACAGGATTC--------------------------------AAAAATAAAT-------AGTTC------ACCGAGATC-GTTTGGGATCGAAAAATACCGGAATGCTACGGAAC----------------------CTCATGTG---AGCTTT-------------TCTCTCTAGCG-GCATGAAATGATTATC------------------------AAAATGTGGGGTGTAACTATG-ACTAAA--------------------ATGCGCAACAACACAAATATAAGTACATCAAAAAAAAAA-------------TAACAGATTATC--
s cb4.chrX              8495608 244 + 21540570 taattaatggGCGGACACTTTTAGTTTGACAAGAAAAATGG---TGGGGCACAGGGAAAATtgtaattcaga-aaaaataga--------atgctTCTACAACCGAGATC-GTTTTGTTTACAAATATACCGGAACGCTACATAGCAGTGATTTCGTTTTGTGTGATTTTTAGGGG--------------------------GATGGGGGTCATGAAATGATTATC------------------------A-----TCGAAGAGA----TT-ATTGGT--------------------TCACAAA----------TATGAACA----AAAATAGGAA-----------TGAAGCAGAGCGTC--
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   550933 256 -  4500979 TGATTAAAATGAAAACACATGTA----AACAGAAAAACTCGAATGGGGGCAAATGAGAACGGGACAAGgagacaaaaataaa--------attgctTAAC-ACCGAGATCGGCTCTGATGAAAAATAAGTTGG-ACGCCATGGAAC----------------------TTTAGAAGTTGAACACA---------------ATGTTAGCGTGCATGAAATGAGTATC-----------------------GA-----TTAAACCGACATCTA-gttgat--------------------taaaaaacaaatacg--CATGAACA----AGAATAAATACGTGAACTCTGCGAAACAGAGTTAA--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5600924 204 + 20921866 TTAGTTA--------------------AGCATGA----------AACAGCAA-TAAGAAACGGCA----------AAATAAAT-------ACATCATATC-ACCGAGATC-GTTTTGATACAAAATATACCGG-AAGCTACAGAAC----------------------CTTTCGAG---AGCACG-------------TTTTTCTAGCG-GCATGAAATGATTATC------------------------A-----TGGAGAAGA---GTA-ACTGGT-----------------ATTTCACACACGAATAGGAACATGAGTA----ATAA-GAGGA-------------AAACATCGAGAA--
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      1838017 230 +  4147112 TGATTAG--------------------CACAGGAAG--------AaaagcagttgaaaaatgggGGT------ACAAATAAAT---ATGCATATCACATC-ACCGAGAtc-tttttgatacaaaatatACCGG-ACGCTACAGAAC----------------------CTTATGAG---AGCAcatgtgtgttttttttgtttctagcG-GCATGAAATGATTATT------------------------A-----TGGAAAAGA---TTAGATTAGC--------------TAGAGTTCGCa---aaataggaacatggata----aaaataataa-------------aaatagagaaaa--
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18194  620194 244 -   823664 Tgatgag--------------------aaaaagaaa--------aaaaccaaa--------------------ataaataattgatataGTCGTTTTTTC-ACCGAGATC------AATACAAAATATACCGG-ATGCTATTGAAC----------------------CTTATCAC---ACGATG-----------GGATTGTCTAGTT-GCATGACATGAGTAGATTAGCAagaacagagaaaaaaagaa-----aagaaaaga---aaa-atcaacgaaaagtACATCTGCAATGACTACAGA-GGGTGGGAGCAAAtata----aaaaaagaga-------------aataatAAGATATG
i caeJap4.Scaffold18194 I 50 C 0

a score=-4949.000000
s ce10.chrX             3416863 24 + 17718866 ATTATTATTGTTCAGCATGGATAT
s caeRem4.Crem_Contig0   551192  9 -  4500979 ------------TCGAACAAC---
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5601132 17 + 20921866 GTTA-------TTAAAATGGGAAA
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      1838251 24 +  4147112 ataatgAGAATTTAGAGTGCAAAG
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194  620438 19 -   823664 -----AtttttttACAATGAATAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8495852 31 + 21540570 I

a score=781585.000000
s ce10.chrX             3416887 1681 + 17718866  
s cb4.chrX              8495883 1542 + 21540570  
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   551201 1639 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5601149 1633 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1838275 1640 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  620457 1690 -   823664  
i caeJap4.Scaffold18194 C 0 I 24

a score=-9752.000000
s ce10.chrX             3418568 27 + 17718866 TTTCTAG---TGGTTTTTCGGTTC------------------TTCAAG
s cb4.chrX              8497425 20 + 21540570 TCCTTAT---TGCATTT-------------------------GTCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   552840 25 -  4500979 TACATAT---CAATTTTC--GAAC------------------GGCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5602782 13 + 20921866 CAATTAT-----------------------------------AGAGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1839915 43 +  4147112 TAAATATGTCCGCTTCT-----ACTTTATCTTGCTATGCGGAAGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  622147 24 -   823664 I

a score=-22092.000000
s ce10.chrX             3418595 40 + 17718866 GAGGAGATTTT----------------TTTGAATCAAT------GTAGCTTTTTGTTTTG-TT
s cb4.chrX              8497445 24 + 21540570 ATGAA---TAg---------------------------------aatgcttttttttgga---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   552865 51 -  4500979 GTagaaattagttttcaaat---ctAATTTGAAAGAGC------AGCGCTTTGTTTTCCT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5602795 46 + 20921866 GTgcaaattca---------------atttcgaagGGCAAATATTCAGCTTCTGTCTTGTT--
i caeSp111.Scaffold630  C 0 I 54
s caePb3.Scfld02_0      1839958 43 +  4147112 ATACAGATGC-----------------TGATAATGGATTTTTATTgtgcttttgtttttg---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  622171 37 -   823664 -----------------AATGagatattttcaaaaagt------atTGTCATCAATTGCT---
i caeJap4.Scaffold18194 I 24 C 0

a score=-13523.000000
s ce10.chrX             3418635 50 + 17718866 AAGCATTGATGCTTTCCAAGACAAG---GAAGTACTGCAAAAGTTTTGATTTT
s cb4.chrX              8497469 24 + 21540570 -----------------aatattat---CTAGATCTGCGACAGC---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   552916 33 -  4500979 -----------------TATCCTGG---TAAGACTTGGAATGGCAGCAATTAA
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      1840001 28 +  4147112 ------------------atttcagaaccAGGAACTAAAACGTAGG-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  622208 43 -   823664 -AGTTATGAtaaa----aacacaaa---taagaaaacaaagagtttagaat--
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5602841 54 + 20921866 I

a score=-5550.000000
s ce10.chrX             3418685 45 + 17718866 AAACATTAAACACTTAACACGACATTTCACAAGAGAAAAGTCAAA
s caeRem4.Crem_Contig0   552954 42 -  4500979 --GACCAGAACACTTAACACAAT-CACTTTCAGATAACCTATCAA
i caeRem4.Crem_Contig0  I 5 I 1
s caeSp111.Scaffold630  5602895 36 + 20921866 gaaaactaaCTAGACAGTGAGA---------AGAcaagaatcaaa
i caeSp111.Scaffold630  I 54 I 44
s caePb3.Scfld02_0      1840029 36 +  4147112 AAAGAAGAAACGGTTAGCATGA--CTCCTCCAGACAAA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  622251 27 -   823664 gaagtttaaaaaattcataaaa-----------acaag-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8497493  0 + 21540570 C

a score=-14626.000000
s ce10.chrX             3418730 47 + 17718866 TCTCTGAATGATTTTGATAA--------------TCGACGGAAAATGCTAGACTTAGTGGA
s cb4.chrX              8497493 37 + 21540570 ------------TCAGCTAG-------AGAACGGTACATGGAAATTTCGAAGG-----GCA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   552997 46 -  4500979 -----------TTTAGTTAGAGATGAAAGAAcaggagaaggagaatgaAACGA----TGAA
i caeRem4.Crem_Contig0  I 1 I 8
s caePb3.Scfld02_0      1840065 27 +  4147112 ----------------------------------CTCTTGAGGAATGAGGTGTTATTTGAA
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18194  622278 34 -   823664 --------CTATTGAGTTAG---------AACTACGGTAGGTTTATGCGGA----------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5602931 44 + 20921866 I

a score=21061.000000
s ce10.chrX             3418777 431 + 17718866  
s cb4.chrX              8497538 467 + 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   553051 426 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5602975 397 + 20921866  
i caeSp111.Scaffold630  I 44 C 0
s caePb3.Scfld02_0      1840107 424 +  4147112  
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18194  622312 386 -   823664  
i caeJap4.Scaffold18194 C 0 I 17

a score=-576.000000
s ce10.chrX             3419208 22 + 17718866 AAAGGCAAGAGAAGGAGATAGC
s cb4.chrX              8498005  5 + 21540570 -----------------CGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   553477  7 -  4500979 ---------------TGAGAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5603372  9 + 20921866 -------------GCTGAGAGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1840531  9 +  4147112 -------------GCAGAGAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  622698 17 -   823664 I

a score=45891.000000
s ce10.chrX             3419230 196 + 17718866 -TTAAA-GTGGGCGGGGATTTGG---CAAAAC-----TAGGAAAAA---------CGGACTACGG----------TGTTCT-----GTTCAGCT----CCTAGGC-------AGGACAACGGCTGTGCTCTAGAAGACTAGAAAAGGCGGCGCTTCAG---------GGCATTTT--TAGTAAT---AATGAG-TTTAACGCTAACACATGTCTAAACATATGCTTGCATCACACAAGCAATTGGATGTTCGT---TTG-------------
s cb4.chrX              8498010 230 + 21540570 -tggaaaatgggcggagcccaCC---TTTCCCTCTTTCCAAAAAAgacgggggggggggcagCAGAAGACTACAATGTTTC-----GGTCAAGAAAGTCTTAAGCTTTTCACAGAACAACGGCTGTGCTCTTGGAGACtagagggggcggagctttggTTTTCTCTTGAG----TAGTGGTACTAGCAATCAG-TT------TAACACATG---AAACAC---CATGGACCACATTTGGCTGCTGATGTTCGT---TTT-------------
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig0   553484 205 -  4500979 -TGacaaaggggcggagtcaaca---TGAACC-----CAGTGAAGGAAAATGGGGGTGTCAACGG----------TGTTTC-----GTTCAGAA----CTTGAGC-TTTCACAGGACAACGGCTGTGCTCTTGGAGACTACAAGAGGCGGCGTTTTAA---------GAAAATTCAGTAGCACT---AATGAG-TT------TAACACATGCCTAAACAC---CATGCATCACATTTGGCAACTGATGTTCGT---TTT-------------
i caeRem4.Crem_Contig0  C 0 I 121
s caeSp111.Scaffold630  5603381 201 + 20921866 -tgaaa--tgggcggagtcaggC----GAAAC-----TGGCCGAGAAGACGGGGGCTGACTACGG----------TGTTCC-----GTT---------TTTGAGC-TTTCACTGGACAACGGCTGTGCTCATAGAGACTAGAATGGGCGGCGCTCCAA---------AAGACTTTAGTACTTCT---AATGAGTTT------TGACACATGTCTAAACAC---CATGAATCACATTTGGCAACCGATGTTCGTTTCTTT-------------
i caeSp111.Scaffold630  C 0 I 39
s caePb3.Scfld02_0      1840540 203 +  4147112 -TGAAATGTGGGCGGAGACTTG-----GAAAC-----TTGTTGAAAAGAAGGAGGCAGACTACGG----------TGTTCACCCTGGGT---------CTCAGGC-TTTCACAGGACATCGGCTGTGCTCGTAAAGGCTAGAATGGGCGGAGCTGATG---------GACAATTCAGTAGTTCT---AATGAG-TT------TAACACTTGTCTAAACAC---CATGAATCACATTTAGCAACTGATGttcgt---ttt-------------
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18194  622715 184 -   823664 Ctgaaa--gaggcggagcttttGTCTTAATAC-----ACGGCAAAA-------------CTACGG----------TGTTCG-----A-----------ATCAGGC--TTTAGAGGACATCCGCCGTGCTCTTGATGAC---AAAGTGCAGCGCATCCA---------GTAAAGTT--GACTACT---GAggat-tt------taat---tatctg--------cATTCGTTTCA--AGGAAACTGATACTAGT---TTTGTCGcataatcag
i caeJap4.Scaffold18194 I 17 C 0

a score=-6598.000000
s ce10.chrX             3419426 50 + 17718866 GAAGTGATGGGAATGGA-------ACAGTGCCCTTTTTTGCAAAGTTCACTA-------ATCAG-
s cb4.chrX              8498301 44 + 21540570 aagttgatAAAATTAAAAGTGGAGAAAGTGAC------------GTGAACTA--------CTAA-
i cb4.chrX              I 61 C 0
s caeSp111.Scaffold630  5603621 48 + 20921866 CGAATGATAAAATTAAA----GACAGAATGAC------------GTGCACTACTGTTGCCCTGT-
i caeSp111.Scaffold630  I 39 C 0
s caePb3.Scfld02_0      1840782 47 +  4147112 TAGCTGATAAAATTAAA---GGAAAAAGTGAC------------GTG-ACTG-TGTAGGTCTGT-
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18194  622899 43 -   823664 --------aaaattaac-TCAAAGAAACATAC------------gcgcaaaa-tttaaaaatgag
i caeJap4.Scaffold18194 C 0 I 144
e caeRem4.Crem_Contig0   553689 121 -  4500979 I

a score=-1760.000000
s ce10.chrX             3419476 76 + 17718866 AGACACAATTTACAAAGTAACAACATACAAA-AAATACAA-AACATGCGTTAATTTTATCATTCTCAGATTTTTTTTT
s cb4.chrX              8498345 56 + 21540570 AGTTT---------------CAATACATA---CGATGTGACTATT----GTggttttaggattttcgaattttctcgt
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630  5603669 64 + 20921866 AGTCTCTACTCTGAGAAACACAACAcataaagaaaattga-aaaa----gtgaattcaGGA--CTCGCGTT-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1840829 64 +  4147112 AGTCGTTACTTTGAGAATCACAACACATAAATCGGTACAG-TACA----GAAAATTCAGGA--TTCAAATT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  622942 144 -   823664 I
e caeRem4.Crem_Contig0   553689 121 -  4500979 I

a score=-9505.000000
s ce10.chrX             3419552 36 + 17718866 TCAAATTAGAT--------------------ACCCTG-CCAAACAAACTGGGAACTG
s cb4.chrX              8498404 31 + 21540570 CTAAATT------------------------TACTGT-CCAAATGAGGCGGACGGT-
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   553810 55 -  4500979 TTGAATTAGATGAAAGTGAATTCAGGATTAGAACTTC-CTCGGCAAAACGACGAAT-
i caeRem4.Crem_Contig0  I 121 C 0
s caeSp111.Scaffold630  5603733 20 + 20921866 -----------------------------------TT-CTGGCCAGAACGCAGATT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1840893 21 +  4147112 -----------------------------------CCATTGGCAAAAACAAGAACT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  622942 144 -   823664 I

a score=106301.000000
s ce10.chrX             3419588 230 + 17718866 CCAAAGATCTGTTTGCAAACAATAGTAG--ATCGCGT-----------TATATATAGACCTGAGGCATGTACTTTTGCTGGTTTTTATAATGAGCT------AAACGCGTTTAGCGATTCAAGTGATTTCATAAAACGTAGTATTGTATTAGGAACT---GGC-ATCTC----TACAGAGACTGATTACAAACCGATGGACTAGAAGTATCTGCAACGATGACGTTCG--TGGATTCTGATTCCGAATCTGATTTT--GTG
s cb4.chrX              8498435 222 + 21540570 -----AAACAGTCTGCAGACGATGGCACTACATTGGATCGGCGGGCATTTTATAGAGAGAAG-GGCATGTACTTTCGCTGGTTTTTGTAATGAGCTTTCGTAATAAAAAGATCTGGGT----GTGAT-----GCAACAAAGAACTGTTTTAGAAAAACCCCATCATCTG----CCTGGAGACTGATTAGGAACCGATGCTTCGGATGATTT-----TGATGACGTTCCGTTAGTTTCTGATGT---------------GTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   553865 221 -  4500979 -----AAACAGTTTGCAAACGGCAGTAC--AATTGGATCGGA------TTTATATATACATG-GGCGTGTacttttgatggtttttatAATGAGCT------AAGCCCAGATCTCGTTTCAGGTGAT-----GAAACAAAGAACTGTATTAGGAGTG---AACAATTTG------TAGAGACTGATTACAAACCGATGGTCTAGTCGTTTT----GCGATGACGTTCA--TGGATTctgatttccatttttgtttctGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5603753 222 + 20921866 -----GGACGGTTTGCAATCGGCAGTAC--ACTTTGATAGG-------TTTAAATAACCATG-GGCGTGTACTTTTGATGGTTTTTATAATGAGCT------AAACACAAATCTCGTTTCTGGTGATTTCATGAAACAAAGAACTGTATTAGGAG-G---AAC-ATATT-------AGAGACTGATTGCAAACCCATAGTCTAGGCGGTTT----ACGATGACGTTCG--TGGACCCTGATTCCCATTTTTGTGTCTGGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1840914 224 +  4147112 -----GGACTGTTCGCAAACGGTAGTAC--ACTGGGCAGGG-------TTTAAATAGACATG-GGCATGTacttttgatggtttttatAATGAGCT------AAACGCAGATCTCGTTTCTGGTGATTTCACGAAACAAAGAACGGTATTAGGAGTG---AACAATTTG-------AGAGACTGATTGCAAACCGATGGTCTAGGCGGTTC----TCGATGACGTTCA--TGGATTCTGATTCCTATTTCAGATTCTGGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  623086 223 -   823664 CCA--AAGCGATTTGGAACTGTTTGCAA--AATTTGTGCGATAGG---TTTAAATAGCCAGT-GGCATGTacttttgatggtttttataATGAGCT------AAACGCGAATCCCGTTTACGATGATTTCATAAAACAAAGAACTGCGTTAGGAGGA---AAAATTACGGCAATGCAGAGACTGACTGCAAACCGATAATCGAGAAGTTTC----ATGATGACGATTG--CTGGATTTGTCCT---------------GTG
i caeJap4.Scaffold18194 I 144 I 53

a score=11904.000000
s ce10.chrX             3419818 66 + 17718866 TCCACCACAGTTCATACA-------------GCGCGGCGCGACTACTGTACCTGCTGACCG---TAAACAGCCGTACGA-GAC
s cb4.chrX              8498657 55 + 21540570 TCCACCACAGTTCACCG---GCTTGT-----G---------ATTACAGTA-----TGTCTG---TCAACA-ATTTGATCGG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   554086 71 -  4500979 TCGACCACACTTCATTGAGCGGTTTT-----GAGAAGAACTACTACAGTACCATCTGACTG---TCAACA-CCGTAAGC-G--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5603975 74 + 20921866 TCGACCACAGTTCATTGAGACGTAGT-----GGAAAAGATGACTACAGTACCTCCTGATCAGCGTCAACA-CCGTAGAA-A--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1841138 76 +  4147112 TCAACCACAGTTCATTGAGCGGttattcgaaataaaaaatgactaCAGTACCTTCTGACTA---TCAACA-CCGTAAGC-G--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  623309 53 -   823664 I

a score=51914.000000
s ce10.chrX             3419884 141 + 17718866 TGATCTGACGAGAAAACAAATAGCCAGTTAGTGCAATAGCTAATTTG--TTGGTGACGTCAAGATTGGTGAAAGATTG-CCGGTCACTTCA-----TACTAATTTTGACT------------------ATCAAGTGTTTAAAATTAGAAGAA--AAAAAAGAAACTTCC
s cb4.chrX              8498712 114 + 21540570 TCAGCAGgcaggcaaaaaa----aaa--cagtgcAGGTGCTAATT------TGTGACGTCAAG---------AGACTATCCAGTCATTT-------TGCCAATTTAGAGTTCAA--------TGTAGC--------------atttgtaaaa-----aaagaaacttcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   554157 150 -  4500979 TGATcaggatgaaaaaaaa----acagtcagTGCAATTGCTAATTTG-TTGTGTGACGTCAAGATCGGCGGAAGAGTG-CCGGTCACTTCAAACAGTACCAATTTAGAGTTCAG--------TGTTGCAGCCAGTG---AAAATGcgtaaaa--ttgaaagaaacttcc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5604049 153 + 20921866 TGATTGGTcgaacgagaaa-aaaatagtccGTGCAATAGCTAATTTAAGTGTGTGACGTCAAGACCGGCGAAAGACTG-CCGGTTACTTGAAACAGTACTAATTTGGAGTTCAG--------TGTAGCATCAAGTG----AAATGCgcgaaa--aaatgagaaacttcC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1841214 160 +  4147112 TGATCgggcaacaaaaaaataacacaGTCAGTGCAATAGCCAATTTGAGTGTCTGACGTCAGGATCGGTTGGAGACTG-CCGGTCACTTCAAACAGTACTAATTTAGAGTTCAG--------TGTAGcagcaaatgaaaaaaacgcgtaaaatcaagaaaaaaacttcc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  623362 146 -   823664 TGATCAGGAAAAAAGGAAG----------TGCCCAATAGCTAATTTG--TGTGTGACGTCAAGAGTGGAAAGATTTGG-TTTGTCGTTTTC-ACAGTTTTAATTCGAAGTTCAGGTCTAGACTGTAGTATTCAGCG-------tgaataaaa--aatggaaaaacttCC
i caeJap4.Scaffold18194 I 53 I 2614

a score=45787.000000
s ce10.chrX             3420025 267 + 17718866 --ATTTTCACCAGTCTGGATTGTTCTTGA-----------------------------TGTTCAAGATGTAG------AAGATGTTGAACAGGTGC---AGAATTCAAATAGT-------------GGGCCAATTGTTTCTTGAAAAT------------TCGGAG-------------GAA-------ACTGTTTCACTG--CTCCCTTGCGCAATACTACAATAAA------------GGTGAAAGCT---ATAAGATG---ATAT---TCAAGTTT----TAAAATGTT-TC-TTGCG-------C-----AAATTTGTGTGATTAGAATAAGATATGC----------AG-ATGAAACAATAT--------TAAAATTTCTGATCTGTGATGCCACTTCTCATAATTT
s cb4.chrX              8498826 353 + 21540570 gttttttt----ctccgGATTGTTCGAGAACTATACCGTGACGATGATGTCGCTGAAGTTGTGACGTCGCTGTCTTCAAGGATATG----AGATGATGGTGAACTATAGTCCCAAGTAGTGTCTGTAGATCAATTTTGT----AAGA------AT-----TCGGTAACAGGTTCAAGTGGAATAGTTGTATTGTTCCAATGCTCTCTCGTCAAGAA-GTAGTGAGGAA-----------GAATCAAATATGAAATCAGATCGCCAAATTTATCTAGTCGGGCATACATTTTC-ACTTTGCGATAATACA-----AATTTTGTGTGATT------AGATATGCGCAAAACGAGGT-AT---ACGATAT--------TTACTCTTCTGATCTGTGATGCCACTtttcttaactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   554307 296 -  4500979 --tttttt----ctccggATTGTTCAAGAACTATACCGTAAGACTGATGACGTT---TTGATGACGT-GCAG-----AAGAATATT----AGAAAC---TGAACTGTACTCCC---------------TTCAAAACCGG----AAGACGTTTGAA-----TTGGAGAAAGGTTGACTTTGAG-------ACTGTTCCACTG--CTCACGATAAGAATATTGCGTCGAA-----------AGATGAAGATTCAAATCGTATC-TCaaat---tctagttt----tgaaatttc-ac-ttgCG-------C-----AATTTTGTGTGATT------AGATATGC----------AG-AT---ACAATAT--------TTACACTTCTGATCTGTGATGCCgttttctccgattc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5604202 298 + 20921866 --CTTTTT----GTCCGGATTGTTCTAGAACTTTACCGTAACACTGATGACGTTTGACTGCTGACGTTGTAG------AGAATATT----TGAGGC---TGAAGTTCAGTTTC---------------CTCcaaattgtttcaaagaCGTTTAGA-----TCAGTG-------------AGA-------ACTGTTTCATTG--CTCACATTGAGAATACATTAATATA---AGttcattgaatgaaaattcaaatcatgTG-TAATAT---TCAAGTTG----TGAATTCCCTTC-TTGCG-------C-----AATTTTGTGTGATT------AGATATGC----------GG-AT---ACGATAT--------TTACACTTCTGATCTGTGAtgccatttt-tctcattt
i caeSp111.Scaffold630  C 0 I 74
s caePb3.Scfld02_0      1841374 317 +  4147112 --c-tTTT----GTCCGGATTGTCCTAGAACTTTACCGT---ACTGATGACGTTCCACTGATGACGTTGTAG------AAAATATT----AGATGT---TGAACTGTAGTGAC-------------GGAACCAAAGTGTTTCGAAGACGTTTAAATAGTTTCAGTAG---------GTCGGA-------AGTGTTCCAATG--CTCACATTGA-AATATGTGAATATGTGTAATTTGTCGAATGAAAAGTCAAATCATATC-TTTTat---tctagttt----tgaaatttc-cc-tTGCG-------CAATGTAATTTTGTGTGATT------AGATATGC----------GGCAT---ACGATATTCCAATTCTTACACTTCTGATCTGTGATGccactt----taattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I

a score=-11087.000000
s ce10.chrX             3420292 49 + 17718866 ------------GTACGGTTTTT---GTACATTACATT------------TGTA-------------CAGAACCGTCAGGTTTCTTGAA-----
s cb4.chrX              8499179 63 + 21540570 ttttttcattgtctacagtaacc---atttgATTTTGT------------TCC--------------TAGAAGATTTGATCTCCT--ACTTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   554603 69 -  4500979 tc------cCGACTACCGTATCC---ATTTGACTCATT------------TCCAGATCAGATAAAAACAGAACGTTTGATTTAGT--CATC--A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1841691 79 +  4147112 ----tttccagattactGTATCccatatttttattattcattaTTAGTCATCCAAGTCAAATC----TAAACGAGTCAGATTATG--AA-----
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e caeSp111.Scaffold630  5604500 74 + 20921866 I

a score=8514.000000
s ce10.chrX             3420341 36 + 17718866 GTGTGCAATGGTCCAGG----------AGTACATGTTGCGTTCTTT
s cb4.chrX              8499242 43 + 21540570 --GTATTCTGATTCAGAGCCCAGCAGCAGTACACGTGAAGTTCTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   554672 34 -  4500979 --GCATGTTGATCTGGA----------AGTACACACCAAGTTCTTC
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold630  5604574 36 + 20921866 GTGTGTCATAATCCCAG----------AGTACACGAGAAGTTCTTT
i caeSp111.Scaffold630  I 74 C 0
s caePb3.Scfld02_0      1841780 36 +  4147112 GTATCCGCTGATCCGAG----------AGTACAGCAGAAGTTCTTC
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I

a score=-6034.000000
s ce10.chrX             3420377 50 + 17718866 --------ATAAAAAGAAAACCGAAGAAACCTGAAAACAAGAAACCGAAAAGAAAAC-----A
s cb4.chrX              8499285 30 + 21540570 ATTTGatgattaaaa--------------------------------ataaaaaaataaaca-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5604610 26 + 20921866 --------CTTGAAACCTATTC-----------------------TGATAtggaaac------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1841816 27 +  4147112 --------ATCAAAACCTATCC----------------------TTTgtatcaaaat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e caeRem4.Crem_Contig0   554706 35 -  4500979 I

a score=81427.000000
s ce10.chrX             3420427 746 + 17718866  
s cb4.chrX              8499315 708 + 21540570  
i cb4.chrX              C 0 I 2105
s caeRem4.Crem_Contig0   554741 765 -  4500979  
i caeRem4.Crem_Contig0  I 35 I 10
s caeSp111.Scaffold630  5604636 716 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1841843 756 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I

a score=-3571.000000
s ce10.chrX             3421173 26 + 17718866 -----CCATTGGAAATGATCGGAAATTAGGG--------------------------
s caeRem4.Crem_Contig0   555516 52 -  4500979 -----CGGTATGAATTGCACACAAACTACGGGGTGAACTCCATAATATATAATTGAG
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5605352 31 + 20921866 TCTTAGAATGAGAAAAGCACACAAACTACGG--------------------------
i caeSp111.Scaffold630  C 0 I 1501
s caePb3.Scfld02_0      1842599 20 +  4147112 TGCTGGAGTTTGTATTGCGC-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I

a score=-9298.000000
s ce10.chrX             3421199 288 + 17718866 TCAACATAATCAGAGGGGAATGCTTTTTTAAATGTTTCTTAACTACCAGTGTTTTGAAATGAAATGTAGCCATAAATATTGCTAAATAGCTGGGTATTTTCCTTTTAAAGGTAATCTTAACAAACTAGAAAATTTTCAAAATTTGAGATTGGGTCCGACTCATTATAGACTAGGCTCATT-TTTGGTC-------AACTAA-------TTAAAAAAAAACAACAATACATCTTGCA-----------------------TTTTCTGAGAAAAAAACAAACACATATCATATTTTTTACTTCATGTTCTGCTTTTACATTATAGCTC--------------
s caeRem4.Crem_Contig0   555568 288 -  4500979 TCAAGTCAATCAAAAGTgtaaatgttttct----tttctcaattgcTGTTGTCT-----GGAAATGTTGTGATGAAGTTCATAAAA---------ACTTGATTAATGTAAGTGAG-gtgaaatgttggaaaa---tcaAAGTAGAAAAT---------CTACATGCCTACAGTATATCTCATTTTGCTATTATAGaacaaatgtttttctcatgaatgaaaaaggaagatttCTCAGAATCGTatcg------------ttttc-----gaaaaacaaaaacata----atttttttctttttcatcacaTTTCGAATTTCGGTTTTCTCATTATAATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1842619 240 +  4147112 -----ACAAAATACGGGGGTCATAACTACA----TTGAGCA--TAATGAAATC--------GAATGCTAGAATACATTTC----------------CTCGTTTGCTGAAA---------AGGTGTAGGAGAA-GGTCAaagttctgaatt---tctgaTTAGATGCA-ACTGTACTCCTTTTCTTGTT-------AACAAACATCTTTTTGATAAGAGATGAAAGAAAACTTCTCA----------gaattgtgttgttttttt-----gaaaaac---------------ttttttcattttcatcagccttcatatttttgttc--------------
i caePb3.Scfld02_0      C 0 I 99
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I

a score=-279.000000
s ce10.chrX             3421487 89 + 17718866 ATTTTAACACCAGGAACGGTATGAAATGTTGAAAAAATAAACAAGTCAGGTTTTTGTATTGCATCTGAAAATTTAAGTTCCGGGTAGAC
s caeRem4.Crem_Contig0   555856 83 -  4500979 AATACACCCTCA--CATGGGTTAGGTTCTTG----AACATCAAAGTCAAATATCACTATTCTACCaagaaatttgggttttttgatACC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1842859 99 +  4147112 I
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I

a score=1297.000000
s ce10.chrX             3421576 9 + 17718866 ATAATAAAA
s caeRem4.Crem_Contig0   555939 9 -  4500979 ATAATGAGA
i caeRem4.Crem_Contig0  C 0 I 1278
s caePb3.Scfld02_0      1842958 9 +  4147112 aaaacaaaa
i caePb3.Scfld02_0      I 99 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I

a score=-2835.000000
s ce10.chrX             3421585 934 + 17718866  
s caePb3.Scfld02_0      1842967 906 +  4147112  
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I
e caeRem4.Crem_Contig0   555948 1278 -  4500979 I

a score=0.000000
s ce10.chrX             3422519 124 + 17718866 CTATCATATTTTTGTCTAACTTTCCCCCAAAATCGCCAATTTCTAAACAAAGTTGGTACTTTGTGGGCTAAACTTAGCCATAAAGTTTTTACGAAATGTAGAGGAATAGCTGGCCGAGTCTATT
e caePb3.Scfld02_0      1843873 103 +  4147112 I
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I
e caeRem4.Crem_Contig0   555948 1278 -  4500979 I

a score=-969.000000
s ce10.chrX             3422643 277 + 17718866 ATGAATTTTTTAAAACATCGGCCTTTTTAAATTTATTATACAATGATATTAAAGTTTAAGATGATGTTATTTTTATGCGATTTCAAAAAATAAATTTCCAACAATCAATTGGAAATGGGTGGGTGTCAAATATGGTACTTCTTCACTATTTTTCTAAATTTTTTGTATTTCAAATGTTCTTCTGAATCTATTTATTAT----TTGAATTTATTGTCATTTTGAAACTTGACACAATTATCATGGTTTCCATTTTCATCTATGACATGTTGAACCAGCACTC
s caePb3.Scfld02_0      1843976 205 +  4147112 ATAGGTTTGGGAAAAAACCAACATGTTT--ATTTA-TAAATAAAAATCCTCTCgct-------atatttattttttctggttactggaaat---ttttaaa---------------gtttggaTCTTAAAAA---------TTCATAACGTTTCTAAA-------GAGACAAGACAGTCTTTTGGAGTTATCCGAGATATCCTTGAACTGATC---------------------AATGTCGTGATTTC-----------GGGAAACGGTGATCCTTCACTC
i caePb3.Scfld02_0      I 103 C 0
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I
e caeRem4.Crem_Contig0   555948 1278 -  4500979 I

a score=0.000000
s ce10.chrX             3422920 2 + 17718866 CA
e caePb3.Scfld02_0      1844181 0 +  4147112 C
e caeJap4.Scaffold18194  623508 2614 -   823664 I
e cb4.chrX              8500023 2105 + 21540570 I
e caeSp111.Scaffold630  5605383 1501 + 20921866 I
e caeRem4.Crem_Contig0   555948 1278 -  4500979 I

a score=1692.000000
s ce10.chrX             3422922 3 + 17718866 AAC
s cb4.chrX              8502128 3 + 21540570 AAC
i cb4.chrX              I 2105 C 0
s caeRem4.Crem_Contig0   557226 3 -  4500979 AAC
i caeRem4.Crem_Contig0  I 1278 C 0
s caeSp111.Scaffold630  5606884 3 + 20921866 AAC
i caeSp111.Scaffold630  I 1501 C 0
e caePb3.Scfld02_0      1844181 0 +  4147112 C
e caeJap4.Scaffold18194  623508 2614 -   823664 I

a score=225349.000000
s ce10.chrX             3422925 457 + 17718866  
s cb4.chrX              8502131 529 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   557229 477 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold630  5606887 481 + 20921866  
i caeSp111.Scaffold630  C 0 I 313
s caePb3.Scfld02_0      1844181 425 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  626122 451 -   823664  
i caeJap4.Scaffold18194 I 2614 C 0

a score=-999.000000
s ce10.chrX             3423382 10 + 17718866 ---AATCAGACTT
s cb4.chrX              8502667 10 + 21540570 ---AGAcatgttt
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   557722 10 -  4500979 ---ACATATATTT
i caeRem4.Crem_Contig0  I 16 C 0
s caePb3.Scfld02_0      1844606 10 +  4147112 ---GCATTGGAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  626573 13 -   823664 ACATACCAGACTT
i caeJap4.Scaffold18194 C 0 I 358
e caeSp111.Scaffold630  5607368 313 + 20921866 I

a score=-598.000000
s ce10.chrX             3423392 39 + 17718866 TTCTCATGTTTT---CCTTA------C----------ATGGTTGAAGAAAGAAAAGAA
s cb4.chrX              8502677 49 + 21540570 ttattttggtgt---atttc------ttttttcagagcttgttaaaaaaacaaaaaaa
i cb4.chrX              C 0 I 873
s caeRem4.Crem_Contig0   557732 35 -  4500979 TCcatatgtttt---gtttt------ttt--------ctagtt------acagaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1844616 54 +  4147112 TCGTTATTTTTTcgcatttcaaaactttttttcaa--ttagttgaaaaaacaaaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  626586 358 -   823664 I
e caeSp111.Scaffold630  5607368 313 + 20921866 I

a score=1232.000000
s ce10.chrX             3423431 18 + 17718866 CAAAGAATTTTCATTTCC
s caeRem4.Crem_Contig0   557767 18 -  4500979 caaaaaagtttgacttAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1844670 17 +  4147112 -tgagctGTTTCATTTCC
i caePb3.Scfld02_0      C 0 I 366
e caeJap4.Scaffold18194  626586 358 -   823664 I
e cb4.chrX              8502726 873 + 21540570 I
e caeSp111.Scaffold630  5607368 313 + 20921866 I

a score=209.000000
s ce10.chrX             3423449 30 + 17718866 AACCCAATTAA---AATGAGGGTGGGCAACAAA
s caeRem4.Crem_Contig0   557785 33 -  4500979 TTCCTCATTCATATAATGAGAACCTGCAGGAAA
i caeRem4.Crem_Contig0  C 0 I 262
e caePb3.Scfld02_0      1844687 366 +  4147112 I
e caeJap4.Scaffold18194  626586 358 -   823664 I
e cb4.chrX              8502726 873 + 21540570 I
e caeSp111.Scaffold630  5607368 313 + 20921866 I

a score=0.000000
s ce10.chrX             3423479 1159 + 17718866  
e caePb3.Scfld02_0      1844687  366 +  4147112 I
e caeJap4.Scaffold18194  626586  358 -   823664 I
e cb4.chrX              8502726  873 + 21540570 I
e caeSp111.Scaffold630  5607368  313 + 20921866 I
e caeRem4.Crem_Contig0   557818  262 -  4500979 I

a score=125.000000
s ce10.chrX             3424638 6 + 17718866 ATCATT
s caeRem4.Crem_Contig0   558080 6 -  4500979 ATGAGT
i caeRem4.Crem_Contig0  I 262 C 0
e caePb3.Scfld02_0      1844687 366 +  4147112 I
e caeJap4.Scaffold18194  626586 358 -   823664 I
e cb4.chrX              8502726 873 + 21540570 I
e caeSp111.Scaffold630  5607368 313 + 20921866 I

a score=-47.000000
s ce10.chrX             3424644 13 + 17718866 GTTTGAACTCTCA---------------
s caeRem4.Crem_Contig0   558086 24 -  4500979 GTTTGGACTCGTGTAG----ACATAACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5607681 26 + 20921866 GTTCGAACTCCTACAGTGACACATAA--
i caeSp111.Scaffold630  I 313 C 0
e caePb3.Scfld02_0      1844687 366 +  4147112 I
e caeJap4.Scaffold18194  626586 358 -   823664 I
e cb4.chrX              8502726 873 + 21540570 I

a score=14866.000000
s ce10.chrX             3424657 159 + 17718866 AGATCTCTGAACTACATGTACTTATTAGACATGTTATATATTGCAAACACACAACCAGAACACATGC-TCCTTGTCAGACTTTATCTGTCT--------------AAGATACTAGGCATTCTCCGAGACAAACAACACTGTTACTGAA-CATTGATAAGCCATGATCCATAATTT-------------------
s caeRem4.Crem_Contig0   558110 167 -  4500979 AGATCTTTGG--CAAGTGTACTAGTCAGACATG-------TTACAAA-ACACAATCACAACATATTA-AGATTCTTAAAGTAGATCTGTCT---AAAAAATGGAGAACGTACCTAAAGGTTTCCGTCACAAACATCAATGCCAACGAA-CGCTTAT------------CTAATTTTAGCCAAGATCAACAACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5607707 159 + 20921866 AGATCTTTGG--TACCCGCTGAGATCAGACATTT--ATAATCACAAA-ACACAATCAAGACGTACTC-CTGTTCTTGGACTTGATctatctagaaaaaagtgtttaatGTACTTGATGTTCGGAGAAACATACATCTTAACCAATAAATTGcttat------------tcaatttt------g-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1845053 164 +  4147112 AGATCTTTGG--CAAACGCACTAATCAGACATGT--CTTATCACAAA-ACACAATCACAGCGTACTCACGATTCTTGAACTTAATccgtct--gaaaaaatgtacaatGTACTAGAAACTTTGAGGAAAAAACATCCATACCAGGGGAACGCTGAT------------TCAATTCCGGTCGGG-----------
i caePb3.Scfld02_0      I 366 C 0
e caeJap4.Scaffold18194  626586 358 -   823664 I
e cb4.chrX              8502726 873 + 21540570 I

a score=20851.000000
s ce10.chrX             3424816 56 + 17718866 ----AATTGCA----CTTTACAGCACGCGATTAGCATTTCCCTACAGAAGAGAGCCAAATTCAA
s cb4.chrX              8503599 59 + 21540570 AATTGGCCTC-----TATTTCAGAACACGACTGACATTTCCATACCGTCGAGAACCCAACACGA
i cb4.chrX              I 873 C 0
s caeRem4.Crem_Contig0   558277 49 -  4500979 ---------------TTTTCCAGAACGAGAATTGCATTTCCATACCGGAGAGAACCTAATTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5607866 55 + 20921866 ----aactAC-----TTTTCCAGAGCAAGAATAGCATTTCCATACCGAAAGGAACCAAATTCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1845217 60 +  4147112 ----ATCTACATATTCTTTGCAGAACGAGGATTTCATTTCCATATCGAAGGGAGCCAAACTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  626586 358 -   823664 I

a score=232904.000000
s ce10.chrX             3424872 586 + 17718866  
s cb4.chrX              8503658 667 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   558326 622 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5607921 632 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1845277 626 +  4147112  
i caePb3.Scfld02_0      C 0 I 554
s caeJap4.Scaffold18194  626944 807 -   823664  
i caeJap4.Scaffold18194 I 358 C 0

a score=1275.000000
s ce10.chrX             3425458 3 + 17718866 TTT
s caeRem4.Crem_Contig0   558948 3 -  4500979 TTT
i caeRem4.Crem_Contig0  C 0 I 80
s caeSp111.Scaffold630  5608553 3 + 20921866 TTT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  627751 2 -   823664 -TT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1845903 554 +  4147112 I
e cb4.chrX              8504325 0 + 21540570 C

a score=-6440.000000
s ce10.chrX             3425461 48 + 17718866 TGATAAAAGTTTTT---GAAATTGTTACTTGGATTTAGTTATAGAAACCTA
s cb4.chrX              8504325 17 + 21540570 ----------------------------TTGGCcgaaaaaattta------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5608556 23 + 20921866 ----------------------------TTAgctttaatttttgaagccAG
i caeSp111.Scaffold630  C 0 I 9
s caeJap4.Scaffold18194  627753 31 -   823664 --------GTTTTTTCCAAGA-------TTTACTCAAAAAATACGA-----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1845903 554 +  4147112 I
e caeRem4.Crem_Contig0   558951 80 -  4500979 I

a score=-9426.000000
s ce10.chrX             3425509 33 + 17718866 AAATTCTGAACaattttt-------------taatataaaaaaaaa
s cb4.chrX              8504342 15 + 21540570 -------------------------------cattttatcaaattc
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   559031 46 -  4500979 AAATCGTGAAACAGTTTTACAGTACGATATGTACCTTAGAAAACTA
i caeRem4.Crem_Contig0  I 80 I 22
s caeSp111.Scaffold630  5608588 29 + 20921866 AAGTCTGgatttaatttaatt----------tatttcat-------
i caeSp111.Scaffold630  I 9 C 0
s caeJap4.Scaffold18194  627784  5 -   823664 --------------------------------AACTT---------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1845903 554 +  4147112 I

a score=125401.000000
s ce10.chrX             3425542 125 + 17718866 tttCAGATGCTCTTGCACTGCCCCCTGTCCAACAGAGTGGAATCCAGTATGCGATAAAAAAGGTCAAACTCATGCAAACTTTTGCACTTTTTTGAACTCAAAGTGTTATCATAAAAACCAGTAAG
s cb4.chrX              8504362 125 + 21540570 tttcagatgttccTGTACTGCACCATGTCCAACTGAGTGGAATCCAGTTTGCGACAAAAAGGGACAGACGCATGCAAACTTTTGCACATTTTTAAACTCCAAATGTTATCACAAGAATCAGTGAG
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   559099 125 -  4500979 CTTCAGATGTTCCTGTACAGCACCTTGTCCTCCGGAATGGAATCCAGTTTGTGACAAGAAAGGACAGACTCATGCCAACTTCTGCAcgtttttaaactcaaaatgcTATCATAAAAACCAGTAAG
i caeRem4.Crem_Contig0  I 22 I 380
s caeSp111.Scaffold630  5608617 125 + 20921866 ttacAGATGTGCCTGCACAGCTCCTTGTCCAACAGAATGGAATCCAGTTTGCGACAAAAAAGGACAAACTCATGCTAACTTTTgcacatttttaaattccaaGTGCTACCATAAAAACCAGTAAG
i caeSp111.Scaffold630  C 0 I 161
s caePb3.Scfld02_0      1846457 125 +  4147112 TTCCAGGTGTTCTTGCACAGCTCCGTGTCCTACTGAATGGAATCCTGTATGTGACAAAAAGGGACAAACACATGCAAACTTTTGcacatttttgaactcaaagtGCTATCATAAAAACCAGTGag
i caePb3.Scfld02_0      I 554 C 0
s caeJap4.Scaffold18194  627789 124 -   823664 -TTTAGATgttcttgtacagctccatgcCCAACCGAATGGAATCCAGTATGTGATAAAAAGGGTCATACTCATGCCAATTTTTGTACTTTCTTGAATTCCAAATGTTATTCTAAGAACCAGTAAG
i caeJap4.Scaffold18194 C 0 C 0

a score=546.000000
s ce10.chrX             3425667 1 + 17718866 T
s cb4.chrX              8504487 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1846582 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 246
s caeJap4.Scaffold18194  627913 1 -   823664 T
i caeJap4.Scaffold18194 C 0 I 5
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=-951.000000
s ce10.chrX             3425668 1 + 17718866 -C
s cb4.chrX              8504488 1 + 21540570 -T
i cb4.chrX              C 0 I 69
s caeJap4.Scaffold18194  627919 1 -   823664 A-
i caeJap4.Scaffold18194 I 5 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=669.000000
s ce10.chrX             3425669 13 + 17718866 AGATGGTAAATGA
s caeJap4.Scaffold18194  627920 13 -   823664 AGATTTTGAATGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e cb4.chrX              8504489 69 + 21540570 I
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=0.000000
s ce10.chrX             3425682 29 + 17718866 GCATAGAAAAAAGATATTCTAAAACCATA
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933  0 -   823664 C
e cb4.chrX              8504489 69 + 21540570 I
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=-490.000000
s ce10.chrX             3425711 213 + 17718866 CATATACTTGACG------TATGA-GTCATTGTGACGAATA-------CCAGATTTG----AACACAAAATACAAACCGACCCAGTTTTTGA-----------AACTTTTTTTGTATGCAACAATTTTACAAAATCATGACAAATAGGATTGATAAATCAAAGAGAAATTTG--TTCAAACTTGTTCTACATTTTTGGAAAATCCGAGGG--------AGCTAAATGAACACATGTT------------ACTTTTG------AAAAATAC
s cb4.chrX              8504558 233 + 21540570 CACTTATTTGACGACTTTTTGTGATAGTATTAAAACGAATAACGTCATCCCGATGTGTGAACATACAAAATACAAG----------TTTTGAGTAGagttgttaatttttttggctt---------------------------tatGAGTAATCAACAGATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTgggaaattggaaatgttTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGC
i cb4.chrX              I 69 I 162
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933   0 -   823664 C
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=0.000000
s ce10.chrX             3425924 193 + 17718866 ATGAGCATGAAAATTTCATAATTGTCATAACCAGCAGTTTTTATATCTAAATTAAAATTGACTGATTCTTAGTGATATCTAAGAAATCAGGTGAACTGTACAAATTCTGTAAAACTGCTGGCAAACGTTGGTTCTATAGGCGTTTATTGGCAATTACAATTTTTTCTAGATACATCTCAAATGATGGAAAAGC
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933   0 -   823664 C
e cb4.chrX              8504791 162 + 21540570 I
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=338.000000
s ce10.chrX             3426117 209 + 17718866 TCAGCAATTTC--AAAAACTTACGTATTCAATCTGTTAGTCATGTGAAACCCTGGAAGCGTTAA------CAAGAAAAGAC-----AATAAAAATATCTGCGATTTTTCGACTTAAC--TTGATTTGAAATTTTTAGTCAAACATTTTT-----TGAAAAGTTTCAAAGTTACAGGGTTTTAGTCGAGTATTTCAAAATTTACAACTTTCATAAA-CTAATT--TTCAAAGT
s cb4.chrX              8504953 215 + 21540570 TCAGTAACGTcgtaaaaa---aaatgttgga-ctGTTAAagaattga----ctgaaaacgcaaaaaatatcgagaagaaacctaaaaatgaaaatgtttttagtgTACGG---TAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAA------ATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAAT
i cb4.chrX              I 162 I 168
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933   0 -   823664 C
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=0.000000
s ce10.chrX             3426326 167 + 17718866 TTTTGGGGTACTGTAGTAGGTTGAAATACAAATATATAGACCACCCAATTTGTTGGCTTTCCCAGAGAGCTTCTAGATTTATTTTTGAAAACTTTCTCTAATAAGTTTAAACTGATTAAAATTTAGAAATTTTGAAGATATTAACAGGCCTCGGATAAATTGGAATA
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933   0 -   823664 C
e cb4.chrX              8505168 168 + 21540570 I
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=-471.000000
s ce10.chrX             3426493 61 + 17718866 GCAGACCATAAAAGCTG---CAACTGAT------------------TTCAAAACAAAAATTAATTATGAAAACGCGTTTTGA---
s cb4.chrX              8505336 85 + 21540570 gcaagatgtaaaaaatgtgccaactgacCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATgttactct
i cb4.chrX              I 168 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933  0 -   823664 C
e caeSp111.Scaffold630  5608742 161 + 20921866 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=2480.000000
s ce10.chrX             3426554 19 + 17718866 AAAATTTTTAACTTTTGAA
s cb4.chrX              8505421 19 + 21540570 gaaattttgaagctttgag
i cb4.chrX              C 0 I 52
s caeSp111.Scaffold630  5608903 19 + 20921866 aaacttttcaatttctaaa
i caeSp111.Scaffold630  I 161 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933  0 -   823664 C
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=-94.000000
s ce10.chrX             3426573 4 + 17718866 ATGT
s caeSp111.Scaffold630  5608922 4 + 20921866 aaac
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e caeJap4.Scaffold18194  627933 0 -   823664 C
e cb4.chrX              8505440 52 + 21540570 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=-2568.000000
s ce10.chrX             3426577 26 + 17718866 GTTTTTCTAATTACATACGCTAGTT---T
s caeSp111.Scaffold630  5608926 27 + 20921866 gGATTACCAAT-ACATG-ACTAACTGAAT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  627933 20 -   823664 --ATTTTCCCT-TCATT-ATGAAC-----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I
e cb4.chrX              8505440 52 + 21540570 I
e caeRem4.Crem_Contig0   559224 380 -  4500979 I

a score=1671.000000
s ce10.chrX             3426603 5 + 17718866 TTTAA
s cb4.chrX              8505492 5 + 21540570 tttgc
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   559604 5 -  4500979 TTTCC
i caeRem4.Crem_Contig0  I 380 C 0
s caeSp111.Scaffold630  5608953 5 + 20921866 CTTAC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  627953 5 -   823664 TTTTC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1846583 246 +  4147112 I

a score=91483.000000
s ce10.chrX             3426608 522 + 17718866  
s cb4.chrX              8505497 513 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   559609 530 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold630  5608958 555 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1846829 578 +  4147112  
i caePb3.Scfld02_0      I 246 I 1
s caeJap4.Scaffold18194  627958 523 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-3144.000000
s ce10.chrX             3427130 19 + 17718866 TAGCTATACTAACAACATC
s cb4.chrX              8506010 13 + 21540570 ------TCCAGTTAAAttg
i cb4.chrX              C 0 I 17
s caeSp111.Scaffold630  5609514 19 + 20921866 ttattgtgttttcatcttc
i caeSp111.Scaffold630  I 1 I 4
s caePb3.Scfld02_0      1847408 19 +  4147112 ttattgtgtttttgttttg
i caePb3.Scfld02_0      I 1 I 15
s caeJap4.Scaffold18194  628481 15 -   823664 ----aaaaaaaacaacatc
i caeJap4.Scaffold18194 C 0 I 6
e caeRem4.Crem_Contig0   560139 40 -  4500979 I

a score=143380.000000
s ce10.chrX             3427149 203 + 17718866 AATATA--CACTTTTCAGGCAAAGTGTCGTCAAATGAGACGAGGAATTGGCAAAAAACGACTGCAAATTGCCGGTGTTGGCCCGTGTAAGCCGAAAAATCCCTTCTTCCGGTCATTTGATTATTTTGTGAATCGATCTGTGAATTATAGTCAAACAAATACTAATCGAGTAGTATAAGAAGT----------AATTGCCAATAAAT-----ATGCCAAAA
s cb4.chrX              8506040 211 + 21540570 TACATA---ATTTTCCAGGCAAAGTGCCGGCAAATAAGACGTGGTACCGGAAAAAAGCGTCTGCAAATTGCTGGTGTCGGACCGTGCAAGCCGAAAAATCCACTTTTCCGATCATTTGATTATTTCGTCAACCGATCGGTCAATTATCGCCAATCAAAAGCTAATCGAGTAT-----GAGTTTGTGAAATCCAATTGCCAATGAAC-TATTGTCTCTGTG
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   560179 196 -  4500979 ----------ttttttaggCTAAATGTCGTCAAATGAGGCGAGGAACCGGGAAGAAGCGTCTCCAAATTGCTGGTGTCGGTCCGTGCAAGCCTAAAAATCCCCTTTTCCGATCATTTGATTATTTCGTCAACCGATCTGTAAATTACCGCCAATCAAAAACTAATCGAGTAT------AGTT------ATTGAATTGccaataaaa--attttgccAAAA
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold630  5609537 201 + 20921866 ATTGTA---TACTTTCAGGCAAAATGTCGAcaaatgagaagaggaaCCGGAAAGAAACGCCTTCAGATTGCTGGTGTCGGTCCATGCAAGCCGAAAAATCCACTTTTCCGatcatttgattattttgtAAACCGATCTGTAAATTATCGCCAAACCAAAACTAATCGAGTAT------AGat------atcaaattaaaaataaaa----agtgccAAAA
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      1847442 205 +  4147112 aatgta---tgcTTTCAGGCGAAATGTCGTCAAATGAGGCGAGGAACCGGGAAGAAGCGTCTTCAAATTGCCGGTGTTGGTCCCtgtaaaccaaaaaatccactTTTCCGATCGTTTGATTATTTTGTTAACCGATCTGTAAATTATCGACAGACGAAAACAAATCGAGTGT------AAAT------TTTAAATTGccaataaactttttgtgccaaaa
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18194  628502 195 -   823664 --AGTAAtttttttGCAGGAAAAATGCCGCCAAATGAGACGTGGAAGCGGAAAGAAACGACTTCAAATTGCAGGTGTTGGACCATGCAAACCAAAGGATCCACTTTTCCGCTCTTTCGATTATTTTGTCAATCGTTTTCCCATTGTTCACCCGACACGAGTAAATCAATTAT------gaat---------aaatt---aataaat-----ttggTAAAA
i caeJap4.Scaffold18194 I 6 I 11413

a score=-18492.000000
s ce10.chrX             3427352 546 + 17718866  
s cb4.chrX              8506251 601 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   560375 542 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5609738 541 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1847647 536 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  628697 11413 -   823664 I

a score=94609.000000
s ce10.chrX             3427898 117 + 17718866 TGTTT----------------------------TCTAGACGGGATCGATTTCCACCCCGTCAATGTCGATTGAGTTGTATTGCACAATTTTCGGCCTTTCTCGATGTTTATTGATTATGTCGCAAATGTCATCATAGATCTGAAA--
s cb4.chrX              8506852 145 + 21540570 gttttaaaaaaaattaatctttTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAA--
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   560917 128 -  4500979 TCTTTGCAGAAAATT-----------------GATTAGACTGGGTCGATTTCCACACCGTCGATGTCAATCGAGTTGTATTGCACAATTTTTGGTCTTTCTCGGTGTTTGTTGATTATGTCGCAGATGTCGTCGTAGATCTAAAA--
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  5610279 128 + 20921866 TCTTTGTGGATA-TTGT----------------TTTAGACTGGGTCAATTTCAACTCCGTCGATGTCGATGGAGTTGTATTGAACAATCTTCGGGCGTTCGCGGTGCTTGTTGATAATGTCGCAGATGTCGTCATAGATCTGAGA--
i caeSp111.Scaffold630  C 0 I 38
s caePb3.Scfld02_0      1848183 131 +  4147112 TCTTTGGGGTTAGGTGTT--------------ATTTATACTGGGTCAATTTCAACTCCATCGATATCAATCGAGTTGTATTGAACAATCTTTGGTCGTTCTCGGTGCTTGTTAATGATATCGCAAATGTCATCatagatctgaaa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  640110 119 -   823664 ----------------------------TGTTATCTAGACTGGTTCAATTTCAACTCCATCGATGTCAATCGAATTGTATTGCACGATTTTTGGACGCTCACGATGCTTGTTGATTATATCACAGATATCGTCGTAAATctacaaaa
i caeJap4.Scaffold18194 I 11413 C 0

a score=726.000000
s ce10.chrX             3428015 2 + 17718866 AT
s cb4.chrX              8507004 2 + 21540570 AT
i cb4.chrX              I 7 C 0
s caePb3.Scfld02_0      1848314 2 +  4147112 at
i caePb3.Scfld02_0      C 0 I 197
s caeJap4.Scaffold18194  640229 2 -   823664 ac
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5610407 38 + 20921866 I
e caeRem4.Crem_Contig0   561045 18 -  4500979 I

a score=-1403.000000
s ce10.chrX             3428017 24 + 17718866 GTT------------------ATCATATTTG----------ATTTTGTCTGT
s cb4.chrX              8507006 52 + 21540570 ATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194  640231 27 -   823664 ---------------acaaaactcatgtttt----------tttttctctat
i caeJap4.Scaffold18194 C 0 I 3
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeSp111.Scaffold630  5610407 38 + 20921866 I
e caeRem4.Crem_Contig0   561045 18 -  4500979 I

a score=343.000000
s ce10.chrX             3428041 66 + 17718866 CAATTTTAAAAATGTCACATATTCATGTGAATATGCACGTT-------------------------TTTTGAAAACTATTTTAAA-AGTTAT
s cb4.chrX              8507058 86 + 21540570 CACCGTGAAAAATGTTACATA------TAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAAT
i cb4.chrX              C 0 I 175
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258  3 -   823664 I
e caeSp111.Scaffold630  5610407 38 + 20921866 I
e caeRem4.Crem_Contig0   561045 18 -  4500979 I

a score=0.000000
s ce10.chrX             3428107 120 + 17718866 GTAGGTGGGGAAATATTTGGTTTTTGTTGTGTTCAAAACTTTTTGAAACGTCAGATACttaaaggtggagtaccgaaaattgtgactttgtttttttaaatctaaaatgacacaaaacta
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258   3 -   823664 I
e cb4.chrX              8507144 175 + 21540570 I
e caeSp111.Scaffold630  5610407  38 + 20921866 I
e caeRem4.Crem_Contig0   561045  18 -  4500979 I

a score=314.000000
s ce10.chrX             3428227 333 + 17718866 ccgaatttcttaatgagacgtattgaaaatttctaaaaaaaaaaagttacggtggtttaaaTTTTTAGAAAAAAAACTGATTTTCAACTAAAAT------CCATTTTTTTAAACGGTCAGTGTGGCCCAAATAAAAGTTGCATTTTGTGCCCCACCGACCGAAAATGTACTTAAATCAACGAATATACGCCTAATGAAATACCACAA---TCTTTATTcgcca---taacttttttttttcaaaatttttcaaagcgtcttattataaaattcgttagtttt--------gggtcattttggggct--aaaaaagcaaagtctc------aaatttcggtaatccacttttaaACTGATGT
s cb4.chrX              8507319 320 + 21540570 TTTAGTTCCTaggtgaga--tatcaaaagtttgtcaactgataaaatattggtgt------------------aaataaattttcagttaaaatgTGTTGACATATTTCagaagaaccaagataattgtaCTCGAAG-TGCATTT--------------ATAGGATGGGCTTCTAACAGAGAAAGT-----TTATGAAGAAccccaaaactcaaaattgacccAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTAcatta-acaattttttaataatagTAAAGGGGAAAATTCTgctgttcaaaaaaatcaatatcttCGGCAGAAATtaagataaattaggtcaaaattgatat
i cb4.chrX              I 175 I 113
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258   3 -   823664 I
e caeSp111.Scaffold630  5610407  38 + 20921866 I
e caeRem4.Crem_Contig0   561045  18 -  4500979 I

a score=0.000000
s ce10.chrX             3428560 100 + 17718866 ATATAGAGTGCGCGAGATTGTTTCCGAATCCCAACATTTGTTTTTTCATTTGATGTGTTTAAGACATTTCTAAGCTCTTTATGGAACACTAATATAGGTA
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258   3 -   823664 I
e cb4.chrX              8507639 113 + 21540570 I
e caeSp111.Scaffold630  5610407  38 + 20921866 I
e caeRem4.Crem_Contig0   561045  18 -  4500979 I

a score=147.000000
s ce10.chrX             3428660 213 + 17718866 TTGGATTCA---GCCTGATATCTTAAAAATTGAAAACCAAAAAGCAAACACTTGAAAAATCGACCCACAATTGTTATAGGGTCACGTAAGATTT-----TGAAACAT----------TTTTGCAGAAAACCTTCAAATCAGAAATGTCGAAGATACCACAAAAATTTTCTAGACGAACTTC----------ACTATGATATTTGA------------GTTTATGGGACTATAGGGGTTTTTTCATTTACCCAC
s cb4.chrX              8507752 230 + 21540570 ttgagctcaattatctgaattcctgcaag--agatatcaaaaagttttcaaatgataaat-------tattcatcatgatatcataaacgtttttttaatgacacatttcagatatcttttgcaggaa---tcgagatcattaagctcaaag--------tggatgGTTTAGAATagcttctatcagagaaaatacggtatgtcAGTTCTCAGCGTGGTTTATGAAAC---ATGAAGTTTTTGATTGACTCCC
i cb4.chrX              I 113 C 0
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258   3 -   823664 I
e caeSp111.Scaffold630  5610407  38 + 20921866 I
e caeRem4.Crem_Contig0   561045  18 -  4500979 I

a score=-1657.000000
s ce10.chrX             3428873  8 + 17718866 ----------GTTC-------------------ATGT
s cb4.chrX              8507982 37 + 21540570 CCTAGTTTTCTTTCACTCAACAATATGGCCAACAGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561063  9 -  4500979 ----------GTTCA------------------AGGT
i caeRem4.Crem_Contig0  I 18 C 0
e caePb3.Scfld02_0      1848316 197 +  4147112 I
e caeJap4.Scaffold18194  640258  3 -   823664 I
e caeSp111.Scaffold630  5610407 38 + 20921866 I

a score=-2325.000000
s ce10.chrX             3428881 14 + 17718866 ---TTTTAAT------GATTAAA
s cb4.chrX              8508019 17 + 21540570 ---TTTCGGAAGCTTGCATT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561072 11 -  4500979 ---TTTTGAC------TATC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1848513 14 +  4147112 tttttatgaa------actc---
i caePb3.Scfld02_0      I 197 C 0
e caeJap4.Scaffold18194  640258  3 -   823664 I
e caeSp111.Scaffold630  5610407 38 + 20921866 I

a score=182.000000
s ce10.chrX             3428895 2 + 17718866 TT
s caeJap4.Scaffold18194  640261 2 -   823664 tt
i caeJap4.Scaffold18194 I 3 C 0
e caePb3.Scfld02_0      1848527 0 +  4147112 C
e cb4.chrX              8508036 0 + 21540570 C
e caeSp111.Scaffold630  5610407 38 + 20921866 I
e caeRem4.Crem_Contig0   561083 0 -  4500979 C

a score=241541.000000
s ce10.chrX             3428897 332 + 17718866 ACCTTGTGTACATCTCCAACCGTCACTAATCCCAAAGTTTGTGCAATATCCCCTTCCATCACCTCGATCCAAATAATGTTGCGCTTGATTGTCCGATGATTCTGAAAA-GTCGAAAAACTCGTTGAGCCATACGA--TTCCCCGGTTGTTTTTCCC-----CTCACATCTGGTGTATATGTTTTTCCTTTACTTGTTTTCTGGACGTTCAGTATTTCAGCTGTATATGATCCACCGCGTTTCGAGCAATCAAACCGCCTTGGACGATAGACGATCGCTTCATCCGCAACGTACACAATCCCACCTCGACGAATCTGAAACGGATTGAATTGAGCAAAAAG
s cb4.chrX              8508036 330 + 21540570 ACCTTGTGAACGTCTCCAACAGTGACCAATCCCATTGTCTGAGCAATCTCGCCCTCCATCACCTCGATCCAGATGATATTTCGTTTGATCGTTCGTTGATTCTACAaa-----cagaaa-acttcaaaaatgtttaattaaGTCATTAATTATTCACTTTGCTTGAATCCGGTGTGTATGTCTTTCCTTTACTTGTCTTCTGGACCTGAAGAATCTCGGCAGTGTATGATCCGCCCTTCTTGGAGCAGTCGAAGCGTCTCGGACGGTAGACAATGTTCTCATCGGCGACATAGACAATTCCACCTCGACGGATCTGAAA---GAA-ATCGGGATGAAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561083 328 -  4500979 ACCTTGTGGACATCTCCAACAGTGACCAATCCTAGAGTTTGTGCAATTTCTCCCTCCATAACCTCAATCCAGATAATGTTGCGTTTGATCGTGCGAtggttctggaaa-----aaaacataattcaTGCATACT---TtccattgttttcttttcttttcgctTACATCTGGTGTGTATGTTTTTCCTTTACTTGTCTTCTGGACGTTCAAAATCTCGGCAGTATATGATCCTCCACGTTTGGAACAGTCAAAACGTCTTGGACGGTAGACGATAGCTTCATCGGCGACATAAACAATTCCACCTCGACGAATCTGAGA---AAT-AGATGAATGagatg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5610445 315 + 20921866 ACCTTGTGAACATCTCCAACCGTCACAAGTCCTAATGTTTGGGCGATCTCTCCCTCCATGACTTCAATCCAAATGATGTTTCTCTTGATCGTCcgatgattctgaa-------ataaaacatttcctGCAtac----ttctct-----tcttttc------cttacATCTGGTGTATATGTTTTTCCTTTACTCGTTTTCTGAACGTTCAGAATCTCGGCAGTATATGATCCTCCACGTTTTGAACAGTCGAAACGTCTTGGACGGTAAACGATAGCTTCATCGGCAACATAAACGATTCCACCTCGACGAATCTGAAG---ATTGATGAGATTGagaga
i caeSp111.Scaffold630  I 38 C 0
s caePb3.Scfld02_0      1848527 329 +  4147112 ACCTTGTGAACATCTCCGACCGTCACCAATCCCAAAGTCTGAGCAATCTCTCCCTCCATAACCTCAATCCAGATGATGTTTCTTTTGATCGTCCGATGATTCTGAAGAAGGCGAAAAACTCGTTCATGCATAC----TTTTCTCACTACTTTTTCA----ACTTACATCTGGTGTGTATGTTTTTCCTTTACTCGTTTTCTGAACGTTCAGAATTTCGGCAGTGTATGAGCCTCCGTGTTTTGAGCAGTCGAAACGTCTTGGACGGTAAACGATAGCCTCATCAGCTACGTAAACGATTCCACCTcgacgaatctgaaa---aaagaaaagggtggaatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  640263 319 -   823664 aCCTTGTGCACGTCCCCAACTGTCACCAATCCAAGCGTCTGAGCAATCTCCCCCTCCAGCACTTCAATCCAGATAATGTTCCGTTTGATGGTTCGGTGATTCTGGAAT-----A------GGCTCATCTATAACT--TTTTATAATGCTAGTTTTA-----CTTACATCTGGTGTGTAAGTTTTTCCTTTTGAAGTTTTCTGAACATTTAATATTTCTGCTGTGTAGGAGCCTCCACGTTTTGAGCAATCGAATCGTCTCGGTCGATAGACAATTGCCTCGTCGGCCACGTACACAATACCACCGCCGCGAATCTAAAA---AAGAAATTGGGAATAAGG
i caeJap4.Scaffold18194 C 0 I 252

a score=26777.000000
s ce10.chrX             3429229 108 + 17718866 AAATAGgaagaagaagaagaagaaagaggaga------------aATGATGTCAGAGA-----TGACAAGGAAATGGTCGGAGAGGGGATGCAAAGACAATTGAATTTCCACGAAAATCCATGCC
s cb4.chrX              8508366 100 + 21540570 AAAGCAAC--------------AAAAAAGCAAGTGAATACAAGGAGTGATGTCACA---------AAAAGGAAATGGTTGAAGT--GGATGAAGACACAATTGTGTTTCCTCTCAAGTCCACACC
i cb4.chrX              C 0 I 213
s caeRem4.Crem_Contig0   561411  92 -  4500979 aaatagaa--------------aaaagagaaa------------agtgatgtCAGACA-----TGACAAGGAAATGGTTGGGGA--GGATGAAGAGACAATCTCATTTCCACAAAAGTCCATCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5610760  88 + 20921866 agataaaa------------------aaggGA------------GATGATGTCAGACA-----GGACAAGGAAATGGTTAGAAA--AGATGAGAAGGCAATTGAATTTccccaaaaattttattt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1848856 109 +  4147112 ggatgaaaactgaaactgg--gagagaagaaa------------gatgatgTCAGAAATAGACTGACAAGGAAATTGTTGAgga--ggatgagaagaaaatccaatttccacGAAAACCTATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640582 252 -   823664 I

a score=-1935.000000
s ce10.chrX             3429337 10 + 17718866 -TGTTTTGGT-C
s caeRem4.Crem_Contig0   561503 10 -  4500979 -AGTTTTGGTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5610848 10 + 20921866 ctccTTTGCT--
i caeSp111.Scaffold630  C 0 I 156
s caePb3.Scfld02_0      1848965 10 +  4147112 TGGATTTATC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640582 252 -   823664 I
e cb4.chrX              8508466 213 + 21540570 I

a score=273.000000
s ce10.chrX             3429347 1 + 17718866 T
s caeRem4.Crem_Contig0   561513 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1848975 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 178
e caeJap4.Scaffold18194  640582 252 -   823664 I
e cb4.chrX              8508466 213 + 21540570 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I

a score=4.000000
s ce10.chrX             3429348 5 + 17718866 ACGCT
s caeRem4.Crem_Contig0   561514 5 -  4500979 GTCCT
i caeRem4.Crem_Contig0  C 0 I 282
e caePb3.Scfld02_0      1848976 178 +  4147112 I
e caeJap4.Scaffold18194  640582 252 -   823664 I
e cb4.chrX              8508466 213 + 21540570 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I

a score=0.000000
s ce10.chrX             3429353 616 + 17718866  
e caePb3.Scfld02_0      1848976 178 +  4147112 I
e caeJap4.Scaffold18194  640582 252 -   823664 I
e cb4.chrX              8508466 213 + 21540570 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I
e caeRem4.Crem_Contig0   561519 282 -  4500979 I

a score=432.000000
s ce10.chrX             3429969 7 + 17718866 CAAAAAA
s caeRem4.Crem_Contig0   561801 7 -  4500979 CATAAAA
i caeRem4.Crem_Contig0  I 282 C 0
e caePb3.Scfld02_0      1848976 178 +  4147112 I
e caeJap4.Scaffold18194  640582 252 -   823664 I
e cb4.chrX              8508466 213 + 21540570 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I

a score=58.000000
s ce10.chrX             3429976 2 + 17718866 -AA
s cb4.chrX              8508679 3 + 21540570 aaa
i cb4.chrX              I 213 C 0
s caeRem4.Crem_Contig0   561808 2 -  4500979 -AT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1848976 178 +  4147112 I
e caeJap4.Scaffold18194  640582 252 -   823664 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I

a score=-706.000000
s ce10.chrX             3429978 2 + 17718866 AC
s cb4.chrX              8508682 1 + 21540570 a-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561810 2 -  4500979 AC
i caeRem4.Crem_Contig0  C 0 I 3
s caeJap4.Scaffold18194  640834 2 -   823664 AT
i caeJap4.Scaffold18194 I 252 C 0
e caePb3.Scfld02_0      1848976 178 +  4147112 I
e caeSp111.Scaffold630  5610858 156 + 20921866 I

a score=137026.000000
s ce10.chrX             3429980 135 + 17718866 ACTCACTTCAGAATTTGTTCCATCATCAAGAATAAACGCGTCGACATGCCACCTGTACCGAACTGAAGAATCGGGAACTCCGGGGTCACAATGGCGGCCAAATACACAGCCCATCTTATTTCATAACCTG----AAAAT
s cb4.chrX              8508683 139 + 21540570 actcacttccgAATTAGTTCCATCGTCAAGAATGAAAGCATCCACGTGCCATCTGTAGCGAACGGATGAGTCCGGCACTCCTGGATCACAGTGACGACCAAAGACGCAACCCATCTTATTTCATAACCTGgaataaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561815 133 -  4500979 ACTCACTTCTGAGTTTGTTCCATCATCGAGAATGAATGCGTCGACGTGCCATCTGTAGCGTACGGAGGAGTCCGGCACTCCGGGGTCACAATGGCGGCCGAAAACGCAACCCATCTTATTTCATAACCtg------aat
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5611014 135 + 20921866 ACTAACCTCTGAATTGGTTCCATCATCAAGTATGAATGCGTCGACGTGCCATCTGTAGCGTACGGATGAGTCCGGAACTCCGGGATCACAATGGCGGCCAAAAACGCAACCCATCTTATTTCATAACCTG----AAAGC
i caeSp111.Scaffold630  I 156 C 0
s caePb3.Scfld02_0      1849154 135 +  4147112 ACTAACCTCTGAGTTGGTTCCATCATCAAGAATGAAAGCGTCTACGTGCCATCTGTAGCGTACGGATGAGTCCGGCACTCCGGGGTCACAATGGCGGCCAAAAACGCAACCCATCTTATTTCataacctg----aaaaa
i caePb3.Scfld02_0      I 178 C 0
s caeJap4.Scaffold18194  640836 133 -   823664 ACATACCTCAGAGTTTGTTCCGTCGTCTAGAATGAAGGCGTCGACGTGCCATCGGTAGCGAATTGACGAATCGGGTACTCTGGGGTCGCAGTGTCGGCCGAATACGCAACCCA--TTATTTCATAACCTG----AAAAT
i caeJap4.Scaffold18194 C 0 I 1138

a score=-32309.000000
s ce10.chrX             3430115 195 + 17718866 TCAAATTTTTTTTTCGATTAATGATTTATAGAATATTTAAGAGTGTGCAACAACTACG---GTAGAATATATCATCGTAAAAAGGTGAG---GGTGCTAGTGTAGTACCTGTACCCAAAAGTATTATCATTACATTTTC-CATTCATTTTTTTTGAATATTAAATTCAAACGTAAAGGTTATGTTAAAAAATTGAAACGCTT
s cb4.chrX              8508822 138 + 21540570 taaaatattaacc----tgaattttctgagaaaga-AGGGATGTACGGAAGAATAGAA---AAGGACT----------GAACACTTGAC---AAAGTAAGTT-ACCGC------------GCTTTCTTATGATTTATGCATGTCTAGGTT--ATGAGACGAAAAGTCAGCTGTT----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   561948 145 -  4500979 tgaaacatttttg----tggtATATATattaaa-------acgaaaagaaaaaaagaa---gataac-----------aaaaaattcct---AAAGTTAG-----------------------TTTTTATGGTTTAT--ATACTGGATTT--CTGAATAGAAACTTGCGTtgtgactg--aaaatggaaaactgaaactcgc
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold630  5611149 134 + 20921866 GGAAGAACTTTAT----TTctgaatctgaagaa------aataagaagaagaagaagaaagaaagaac------tcgagaacgcttgaaaagaaaattagtg-ACTAT---------------TTTCTTTGACTTCTTCTTGTCTAGCTC--------ACAAAAGTCAGCTGTT----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1849289 120 +  4147112 tgagg----------------gaGTATGAGTAC------AGTGAGTGGAAAAGCAGTA---ATAGAGT------CAGAGAAcacttgaaaagaaaattagtg-AGTA----------------------TGACTTATACTAGTCtagctcttttttgtttgaaagtcAGCTGTT----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640969 1138 -   823664 I

a score=-532.000000
s ce10.chrX             3430310 23 + 17718866 CGAAATCTTTTGGTTA-CGGCTAC
s cb4.chrX              8508960 11 + 21540570 CGA------TTCGTCAC-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5611283 10 + 20921866 CGA------TTagtca--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1849409 10 +  4147112 CGA------TTcgtca--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640969 1138 -   823664 I
e caeRem4.Crem_Contig0   562093 41 -  4500979 I

a score=-8955.000000
s ce10.chrX             3430333 363 + 17718866 TTTTGGGT--------TAGAAATAGTTTCTGGAAAAATTC-TACTGAAGTTTTTTTTCGAATAAATTATTCACTCGCACTCATGAAATTAAATGGGACAAT-AGGCGATGAAGTAGTTCTCATaaaaaaaaaaaata----aaaacaag------------------aaaaa--------------------aagg--aagaTTCATGAATACTGTCTTTTT-------------------ACAAGAAAATTTGAT----------TCAA------------TTAT---------TCAAAAAAGGAAGTAAAATATGAAGATAGA--------GAATATAACAAAGTACGATGAGAAGCGTGAAAGAAAAAAGGAAATCTGACTGAGAATAAGTGAAAGAGCAGTTGAGG--------GGCTCTTTTATACATGCACGATGGGCGGAGTTCATT----GTGCG-GACCCATTCAATT-----TTGAGCTCTCA
s cb4.chrX              8508971 257 + 21540570 -TCTGAAT---------CGAATTTG-------TGAACTTC----tcaaa-------------------------------------------------aac-a--cgaaaaag-------------AAGGGAAGTGA----Acccgaaa------------------acaaa--------------------aataggaGAACTT-------------------------------------TCCCCTTGCCTCCTTCTCAATAGATTAA------------TTATTCCGCGAAATCGAG-----------TCCATGAGAACAGA---------------GGCAAACGCAA------------GGAAAGAGGGGAAATCCGTATG-----AAGTGAAAGAGCAA--AACG---AGGAGGTCccttcca-aaaaaagagatgggCGGGGCTCTCCGAGTGCACACGGACAgccc---------tttttttcca-
i cb4.chrX              C 0 I 71
s caeRem4.Crem_Contig0   562134 290 -  4500979 TGATGAAtgagagaaagtgaaaatg-------aaaaattc----agaaa-------------------------------------------------aat-aactggtccat-------------taggaaaatcacgttactaaaag------------------aaaaa--------------------agta--aaaacgtATTATGA-----------------------------ATCTCATAGTTTGCC----------TTAA------------TTAT-------AATCAAG----------AACCATTTAGACATA---------------ACAAAATACGACGAGAA--GagtgaaagaaagagaaatccGAATGCGAACAAGTGAAAGAGCAACCGACGAGCAGAAGGGCTCTTTTATACACGCGAGATGGGCGGGGTTCCCC----GTACACGGCCCCTCCAAAACGGAATTGTGCTCTGA
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold630  5611293 341 + 20921866 -tttgatt--------ctgaat---------------ttcgtACTAAAG-------------------------------------------------AATGAGACaatgaag-------------aaggaaagt------GCGAGAGT------------------AGAACTCGACACGTTTTAgttt---aatt--gaaaatcataaaaactgTACGAATCTGAGCGACTATACgaataattaaaatattcACC----------TTCA-ATATTCTGATGTtgt-------aatcgaaaaaaga----aactatcagaatata------aaggaaagaacaaaacacaaagcaaa----aaaaaggaaaaagaaatctgaatGTGAATAAGTGAAAGAGCAACCGAAGAGCAGTAGGCCTCTTTTATACATGAAAGATGGGCGGAGTTCACC----GTGAG-GGGCCCTCCAAATAAGAATGGTGCAATAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1849419 359 +  4147112 --ttgaaa--------ttgaatttg------------ttcgTCTACAAG-------------------------------------------------AAc-agacaaaaaagt-----------aaaaagaaga------atgagaataataaaaatgtaaacggaagaaatTCACAGCCTCTAATactagaatg--aaaaataattttcattgggAGGTCc------------------gttaaaaaagttttc----------ttaaGAAGTTCTCATGATAT--------ATTGAAGAAGGatgc-ggcgaacaaaacataCTCcgtaaaaatagaacaaagtACGATGGGAA-TGCgtgaaagaaaaggaaatccGAATGTGAATAAGTGAAAGAGCAACCGAAGAGAAGCAGGCCTCTTTTATACATGAGAGATGGGCGGAGTTCACC----GTGCG-GGGCCCTCCAGACCAAAATTGTGCTCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640969 1138 -   823664 I

a score=2543.000000
s ce10.chrX             3430696 60 + 17718866 ATCAGGTTTGAAATAG-----------AGAAT-GGGAATCAAAATTAAATGTTGGCAGAAAATATTAGCTTA
s caeRem4.Crem_Contig0   562424 58 -  4500979 ATGTTCTCCAAAATAATAAC-------AggcttagaaaaaaaaacgaaacgcCTACGAAGAATAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5611634 70 + 20921866 ATGTGCttcaaaataacaacaaTAATAAGGCT--TAAACAAAACCTCAACGCCCACAGAAACGAGAAATGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1849778 57 +  4147112 ATGCGTTCTAAAATAATAAC-------AGGCT--GTGAAAAAGACTGCACGCCcaccgaaacaaa------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640969 1138 -   823664 I
e cb4.chrX              8509228 71 + 21540570 I

a score=22013.000000
s ce10.chrX             3430756 223 + 17718866 AATGATGATTATCC------TATTCGAAAAATGAAATGAAAATGTGAGATTTTTTGAGAG----------------AATAAATCGAAAAA----------GGTGTGATGAAATTGCATATAATTCCAG-AAACACTTTGCATTCTCATACAGTTTTTGCTTATCAAG-------GTTATTCAGTGAAAACGGTCTACGTGATGTATAAGAGGCAAAGTTTAGTGGAAACCGGATGCACATACACACACAC-----------ACACAAACGTG-------------------GA
s cb4.chrX              8509299 202 + 21540570 AATGATGGATTTATTCGAAATATTCGAtaaagataagaaa------------------------------------aaagaaatgaaaag--------------ttGTGAAATCGAGT----TTCCAG-AAACACAT-------------GCGTAGTTcttatcatca------atttttcggtGAAAACGGTCTACTTGATGTAAAAGAGGCAAAGTTTAGACGAAACCGGATGCTAAAACAGACACT----------------AAACGTATAG-AGAAGAAGCTGGGGAGA
i cb4.chrX              I 71 C 0
s caeRem4.Crem_Contig0   562482 251 -  4500979 ---TATGGAGACACGT----TATTCAAACAAGATAAGAAATG----AAGGTtatctatgttttttttccattttggaaATACTTGAAATGCGTGTTTCATCATATTTTCGAggaaaat----ttctag-aaacatATC--------ATCACAGTTGTGCTTATCattacatttcatttttcggtgaaaacgGTCTACGTGAGGTACAAGAGGCAAAGTTTAAGCGAAACCGGATGC--ACACAGACACTG-----------GCACAAACGTGAAGCAGGAGA-----GGAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5611704 237 + 20921866 AAGCatgga-----------aaaaggagagagataAGGAAAT----ACAGTTATCAACAGTGATATAAAcga----aaacattcgaaa-------tgaGTAGTATGATGAAATTA-------TTCCAG-AAACAATCT--------ATCATCATTGTGCTTATCTCAT------ATAGTTCGGAGAAAACCGTCGGCGTGATGTACAAGAAGCGAAGTTTAAACGAAACCGGATGcacgcacacacacacacacaactCTCGCACAAACGTGA---AGCAGA-----GAGTGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1849835 237 +  4147112 aagtatggA-----------ATAGAAATATagataagaaaattgaagaaattctcGATAGTTCTTTCccaga----aacttttcgaaacg-----tgtgtaaaattgtgaaatta-------ttccagaaaaaaatag--------agcacAATTTTGataacacttc------ttttttcggtgaaaCCGGTCTACGTGATGTACACGAAACAAAGTTTAAATGAAACCGGATGCACATACATACATAGACATAACTCG-GCA-AAACGTG--------GA-----GAGTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  640969 1138 -   823664 I

a score=22383.000000
s ce10.chrX             3430979 214 + 17718866 GCATCAATGG----AGAAG-GCA----AGAGAAGAGGCGTT--TGTGAATG------CCCGTCGCACATCAAGAA--GCTTGAAATAGGATCTGTGTGCGAATTA-----------------AGCTT--CGCATTTGA-GCAAAGTGCGCATTTTCAGGT-----GGGC------TTGGTCA--------------------AGAGGGCTTTTGGT------CTAGACATTTTTGGTAATGAGTTGAGTA----GTTTCAAACAAAA---AAAGGAGATGAGGCTCTTGAGAGGAAT
s cb4.chrX              8509501 214 + 21540570 GCATCAATGGAGA-AAAAA-GGCACAGAGAGG----GCATT--C---AATG------CTCCTGGCACATCAAGAATGGCTTGAAATAGGATCTGTGTGCGAATTAGAGACGGCCGGCGGGTGGGACCATCGTATTTGGAGCAAAGTGTGCATTGTCAGGTGTAGCGGAC-----------TATTA---------GGGAGA--GAAAATAGTGAA----------CGAATTAGCAGAAAACAG---GAATATGGAGTTCGGA-------------------------------GTAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   562733 217 -  4500979 GCATCAATGG----AAAAT-GGC----AGAGA----GCGTT--TGTGAATG------CC----GCACATCAAGAA--GCTTGAAATAGGATCTGTGTGCGAATTA-----------------GGCCCGACGTATTTGG-GCAAAGTGCGCTTTTTCAGGTGCCGAGGGCACTCGATTGGTTATTAAAACTGGATGGTCTA--AGAAACAGTTTCAT------TTTGACTTAATAAAAAAC-----GAATACAG-TTTCGCATTA---------------------CCCGATTGTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5611941 199 + 20921866 GCATCAATGG----AAGAA-GGC----ACGGA----GCGTGAATGTGAATG------CC----GCACATCAAGAA--GCTTGAAATAGGATCTGTGTGCGAATTA-----------------GGCCC--CCTATTTGG-GCAAAGTGCGCATTTTCAGGTGCCAAGGGc-----attggtttttcaaaaagtacgatgctataaaaatattttggttAAAAACTTAGTTTTTTAA----C-----CAAAA----GTTCAT-----------------------------------CC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1850072 179 +  4147112 GCATCAATGG----AAAAACGGC----AGAGA----GCGTT--TGTGAATG-----CCC----GCACATCAAGAA--GCTTGAAATAGGATCCGTGTGCGAATTA-----------------GGCGT--CGTTTTTGG-GCAAAGTGCGCTTTTTCAGGT------GGC-----ATTGGTTTTTAGGAA-------------AAACGtactttttt------ctcggttttcttA----------GAATA----GTTCATAACA---------------------C--------AAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  642107 206 -   823664 GCATTATTAaagataaaaa-cga----aaaag----gcACG--T-AGGATGAGACATCC----GGACCTTCAACA--ACTTGAAATTGGAGCCGTGTGCGAATTA-----------------AAGCT--CGTATTGGGGGCAAAGTGTGCCTTTGCAAAA------TGCTTCCGACTACTTTT-------------------CGTAATATGTTGTT------Ggtg-------------------aaaaa----gttcaaaaaaaaattgcaaagagTGGAGGTTCGCGGAGTGAAT
i caeJap4.Scaffold18194 I 1138 I 1687

a score=-9773.000000
s ce10.chrX             3431193 39 + 17718866 TTTCA--AAGAACAAAAGAAGAT-----AAC-TCGAA-------AATTGGTTTT-----------
s cb4.chrX              8509715 45 + 21540570 gttca--aaacacaaaactaGTT--GTAaat-tgggaaga----aaaaagtttc-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   562950 47 -  4500979 TTTCA--AGCTACACTGCAATTTTATGAAAC-TTCACAGA----AGGTCCTTCC-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5612140 56 + 20921866 TTCTA--AAtgacaaaaactttt--tgaaacttttgaagaacagaaaaacttgaaaattg-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1850251 61 +  4147112 TTTTAACAATAAGTGAAAC-TAT--TGAAAC-TTGGAGGAAccaaaaaacgtgaaaattggCTTT
i caePb3.Scfld02_0      C 0 I 2328
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-32216.000000
s ce10.chrX             3431232 171 + 17718866 -------------------------GGAAAAATAATTTTTAATTTTCTAGCAAATTAGTTAGGCTTTAAGTAT---------TTTTAGTTATAGCAACCT--CGTTTTACTTTA---AAAAAAA---AAGTATTTTCAACTATAATTTAAAAAAAAACCTTATGT--------CCTTA-TCAA--AA--------TTTCTAACAAATGAGGTCTTAAAACTGTTTTGTTTCT-----------
s cb4.chrX              8509760 184 + 21540570 gaa------------------gaaCACAAA--------TTAGTTTTC-----------TTGTCTTTTCAAGGTTA-GTC---TACTTGTTTCTTGAACTC----ATTTTTCGTA---GAATGAGT--CAGTATTCT-GAGGATAGTTCAAAAAACGGAGCCAAGT--------GTTCATTGAAACAAATTGACTGATAATTACTGTTCAATTATGAGTGAATTACTGGTTTTAGAATGATGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   562997 225 -  4500979 ATACTTCCACCGCTGAGGTTTGAACCTATAAGGTATTTCTAGCTTCC------ACTGTTTATGTTTAACAAATAATGTCAAATACTGCTTTCACTAACttctggattttcagtacCCGAAACAGttcctttatttt---------tccaaatgatAATGACGAATTCGATCAAGCTTA-TGAAATAA--CAACTGTTGCCTATCAACTTAATTTAGATGACGTAGTTGTACTGTAATAATTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5612196  97 + 20921866 ------------------------------------------------------------------------------------------------------agttttccaGAG---GAAAGCCTATCAACCCTCT---------TTTCGGAACAGAAAAGGAGTT-------GTCTG-TAAATTag------tttctctttctattttcttct-------cttttttttct-----------
i caeSp111.Scaffold630  C 0 I 60
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-1089.000000
s ce10.chrX             3431403 85 + 17718866 GGAACACATGGCACCGAATTACGTCAAAGAAGCAAAAGTAGTC---TATTTATAGAATCACTCCAAATACACTTAAATTTTTTGAAAA
s cb4.chrX              8509944 53 + 21540570 gtttcaaaag-----aattttcggTAAAGA--CGAACattgttttatattttcaaaaata----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   563222 62 -  4500979 GGAACACATGGTATTGAATTACGTCAAAAA--CGACTGatgc----tattttcagaaata------acgCTCCT--------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I
e caeSp111.Scaffold630  5612293 60 + 20921866 I

a score=189.000000
s ce10.chrX             3431488 34 + 17718866 AGTTATAATAAACAAATACATGCATAGAAATATT
s cb4.chrX              8509997 31 + 21540570 ---cagagaAAGTGAAAATCTCCCAAAAATTATT
i cb4.chrX              C 0 I 236
s caeRem4.Crem_Contig0   563284 32 -  4500979 --TCATTTTAAAACAGGACGcttggaaaattttt
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  5612353 31 + 20921866 AGTTAGATTAAgcaag---tttcagaaaaagctT
i caeSp111.Scaffold630  I 60 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-12682.000000
s ce10.chrX             3431522 246 + 17718866 AGTTTAAATATTT--TGTAGATAAGGAAAAATGCAAAAAAAATAGAGTGGGTGGGCGGAAGTTGGACAAAAAAAATGCCAGTGATAAAGGTACACTACAGTTTTGAAAATGTTTGAACATGAGTTCATGAGCCTGTGGCAACTGAAATATTGGCCAGCTGG--CAATTGCCCAATTTGCCGAACGCAAAAATAGTCCACATTTTTGGTCAATGCCAAATCTTGAAATGTTTGAATTTGGTTACAAGAAAC
s caeRem4.Crem_Contig0   563337 205 -  4500979 -ggttCCGTATCTATTGTTg--tatttcaaatg---aaaaaatgaaaaaaac---caaacagtgataagagaaaaaaacggaaaaaagagtG------GGAGTTAAGAA------------------TGGGTGCGACGTGCTTGATCTGTACAACCTCCGGTTCAACTTCCCTCTTGATAAA----TAAGGTGGACTACA------GTAAACTCCCAATTTTGCAATACTCGAA--GGGATATTAAAACC
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  5612384 121 + 20921866 ---------------TGT----Tatggaaagtg---aaaaaatgaagtttgt---CTTATCTTCTC------------------------------------TTCACAA-----------------------GTGACGTTACTTAACAGTTCTGAAACCGG------TGTTCTCTACGTCAA----TACAATATgtca--------------tttctattttgagaTGC---------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I
e cb4.chrX              8510028 236 + 21540570 I

a score=-2731.000000
s ce10.chrX             3431768 23 + 17718866 AAGCAAAAAATTTCGAAAGAATA
s cb4.chrX              8510264 20 + 21540570 aaactgaaaattctgaggca---
i cb4.chrX              I 236 C 0
s caeRem4.Crem_Contig0   563542 21 -  4500979 --GATGGAGATAtagaaaaagta
i caeRem4.Crem_Contig0  C 0 I 64
s caeSp111.Scaffold630  5612505 13 + 20921866 -TATTAGAAGAATA---------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-1723.000000
s ce10.chrX             3431791 65 + 17718866 AAAGTTTTGAAAAAAGCACTAAAAA----ATTTGTACATTTTTCGGTAGATTTCACTTTTT-TGGTATTT
s cb4.chrX              8510284 60 + 21540570 ----tttttagaaaagtatcaaaaacaaaaatggagcAtttt------catggtatttttcatggtattt
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630  5612518 36 + 20921866 -----AATTGGAAACACCCCAAGAA--------------TTT------GTTTCCATTCgtc---------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I
e caeRem4.Crem_Contig0   563563 64 -  4500979 I

a score=-32870.000000
s ce10.chrX             3431856 227 + 17718866 GCCAAGTTATTAATGAAATAA----TTATCAAA--TTTAAAATGAATCAAATTTTCAAATAG----AAATTGC--------------CGTTAAGTTAGCA---------------AAATACGTTCTTAAAATATATAGGAAATTGTTGGTAAATTAAAATTT---AAACTTT------TTCCAGTGGTCCTTTTAACTTTTACGTTTTCCGTTCAAAATAAAAAATGTTAGGAAAAA-AAAAGAAT-ATCATGCAAATTCACTTAAAAATTATATTA
s cb4.chrX              8510346 256 + 21540570 atgatatt-tcaaaaatcccagaCCCTTCCAGAAGTTT--------TCCGAAGCGTATGAAAACTTAAAGTGTTCCATTATGAACCGATTTTGGATGTTCtgcaggtttttttttgaatactttcTTTGTTGTTATGTGAA----TTGCTATATCTACATATCAcgaaataattaaaattttggtcCTAGTCTGGtttttttAG--CCTGATAAGAAAGAAAGGAAGTTAGGTGCGA-AATGAAATTCTTGCTCCATCTTGTTTGGAAACTA-----
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   563627 122 -  4500979 ACCACGTtgtcagaaattcaa----tttccatA--TTT--GATGGATTGAAATCAgataaaa----aaaatgt--------------attgagaATGCTA---------------GAATACt-------------------------------------------ggaataa-------------------------------------------aaagagaaaatgaaaagaacgA-ACAACAAT----------------------ACCA-----
i caeRem4.Crem_Contig0  I 64 C 0
s caeSp111.Scaffold630  5612554 149 + 20921866 --------acaaaaaaatcac----tattcgga--------------aaaaagcatagataagaaaaaaatg---------------agtagGAGTT------------------GAATGGT------------------------------ATGCACCTGACCTGAACTGT------CTCCGGTTCAACTCTGA-------------TAATTAGACATGGAGGTTGAAAACCGCTAGACTACGCTTAtttttttAG--------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1850312 2328 +  4147112 I
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-5540.000000
s ce10.chrX             3432083 551 + 17718866  
s cb4.chrX              8510602 594 + 21540570  
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   563749 345 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5612703 551 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1852640 562 +  4147112  
i caePb3.Scfld02_0      I 2328 C 0
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=-15756.000000
s ce10.chrX             3432634  35 + 17718866 ------------------------------------------------------------------------------------------------GGTTTTTGCTTTTGTCTCTATTTCGGTGTGGCTTA
s caeRem4.Crem_Contig0   564102  77 -  4500979 GGTGGGGAGGAATATGTCTAGAGGGTGGTTTT-----------------------------GCAAAGT----------------------AGAAgacttttttgactgatttttctttctgagGTACA---
i caeRem4.Crem_Contig0  I 8 I 8
s caeSp111.Scaffold630  5613254 109 + 20921866 ----------------TTCATTG---GGTTTTTGACCAGAAGTTAACGAGTTTAAAAGTGGGTcaagtttttccaaaagtttttgtttccatAATAATTCTTCaac---attttcgttttgatgtcttgtc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1853202  42 +  4147112 ----------------cttattg---gttttt-----------------------------gTCAA------------------------ATAATGG-----------------CATTCTGGTGGTCcgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  642313 1687 -   823664 I
e cb4.chrX              8511196  51 + 21540570 I

a score=-89581.000000
s ce10.chrX             3432669 262 + 17718866  
s cb4.chrX              8511247 372 + 21540570  
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig0   564187 289 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5613363 287 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1853244 411 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  642313 1687 -   823664 I

a score=119896.000000
s ce10.chrX             3432931 127 + 17718866 CTAACGTT---AGATGGGTTGT--CGTCAC------GAGAGTGAACTGAAATGGACATAATCGAGTACCTTTTGTGTTTG-CATTCATCTTTAATGTATGAGATTTTTCGGGGCTC-------------------------CCGTTTTTATTGATGTGATCGGT
s cb4.chrX              8511619 133 + 21540570 -----GGTCCAAAATGGATTGTCGCGTCACGAGAATGAGAATGAACTGAAATGGACATAATCGAGTACCTTTTGTGTTTCGCATTCATCTTTAATGTATGAGATTTC---GTGC-----------TTCT------------CCATTTTTATTGATGTAATCGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   564476 131 -  4500979 -----GGT---AGATGGATTGT--CGTCAC------GAGAGTGAACTGAAATGGACATAATCGAGTACCTTTTGTGTTTC-CATTCATCTTTAATGTATGAGATTTT---GTGCTTCAAAC-GCTTTCG------------CCGTTTTTATTGATGTGATCTGT
i caeRem4.Crem_Contig0  C 0 I 400
s caeSp111.Scaffold630  5613650 133 + 20921866 -----GTT---AAATGGATTTT--TGGCACGA----GAGAGTGAACTGAAATGGACATAATCGAGTACCTTTTGTGTTTG-CATTCATCTTTAATGTATGAGATTTT---GTGCTTCAAAC-GCGTTTG------------TCGTTATTATTGATGTGATCGGC
i caeSp111.Scaffold630  C 0 I 14
s caePb3.Scfld02_0      1853655 132 +  4147112 -----GTT---AGATGGATTGT--CGTCAC------AAGAGTGAACTGAAATGGACATAATCGAGTACCTTTTGTGTTTG-CATTCATCTTTAATGTATGAGATTTT---GTGCTTCAAAC-GCTTCTGC-----------CCGTTTTTATTGATGTGATCGGT
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18194  644000 149 -   823664 CTAACGTT---AGATGGATTTT--CGTCAC------GAGAGTGAACTGAAATGGACATAATCGAGCACCTTTTGTGTTTG-CATTCATCTTTAATGTATGAGATTTT---GTGCTGTGCACAGCCCGCGTATTAAGGAAAACCTCTTTTATTGATGTGATCGAT
i caeJap4.Scaffold18194 I 1687 C 0

a score=-2558.000000
s ce10.chrX             3433058 10 + 17718866 TGAAGAAG-----GA
s cb4.chrX              8511752 12 + 21540570 ---AGTAGTGGCAGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5613797 15 + 20921866 gaaaaaagaacaaga
i caeSp111.Scaffold630  I 14 C 0
s caePb3.Scfld02_0      1853810 15 +  4147112 CGAAGAGGTACCAGA
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18194  644149 10 -   823664 -GGAAAAATga----
i caeJap4.Scaffold18194 C 0 I 394
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=1086.000000
s ce10.chrX             3433068 36 + 17718866 AGCCAGTGG-AGCATTGCAGAGGACTAA----------ATGTGAGT-T
s cb4.chrX              8511764 37 + 21540570 ACAAAAAGAGAGGATtgtagaaaacaaa----------aagtgaggT-
i cb4.chrX              C 0 I 298
s caeSp111.Scaffold630  5613812 35 + 20921866 gtTCGATGA-AGCGttgcagaaaaaaga----------cagGGGTA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1853825 45 +  4147112 ATTCAATGA-AGCATTGCAGAGAACAAAGAAATTGGTTAAGGGAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  644159 394 -   823664 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=427.000000
s ce10.chrX             3433104 11 + 17718866 AAATTTTGACT
s caeSp111.Scaffold630  5613847 11 + 20921866 AAATCATGATT
i caeSp111.Scaffold630  C 0 I 149
s caePb3.Scfld02_0      1853870 10 +  4147112 AGATCATGCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  644159 394 -   823664 I
e cb4.chrX              8511801 298 + 21540570 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=939.000000
s ce10.chrX             3433115 35 + 17718866 TAGCTATTCATGGTTTGGACTTTTTGCTCTACGTG
s caePb3.Scfld02_0      1853880 35 +  4147112 CATCTACTAGTTGGTTCGGTTGTTTGATTTACATG
i caePb3.Scfld02_0      C 0 I 221
e caeJap4.Scaffold18194  644159 394 -   823664 I
e cb4.chrX              8511801 298 + 21540570 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=0.000000
s ce10.chrX             3433150 128 + 17718866 TGCTCCACATTTTTGAAGGAACTACAACATTATCACAGACAAACGAAAGTAAATCAATTCACATTTTCTATCGTTTTCTAATAATCTTACACCTCTGCTGTTCCAATTTAAACATTTATATCACAACT
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e cb4.chrX              8511801 298 + 21540570 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=956.000000
s ce10.chrX             3433278 80 + 17718866 GTTTTAGGTTTTATCAAAAAACAATTATGACCCGTCTTTTTCCTG-GTAAAATTATTTACATGAAAGA-----------TACAAAATCTGCC
s cb4.chrX              8512099 92 + 21540570 atttcagagtataccaaaaaacgattttcagttgacaattttttgcataAATCCATCAAAGCAAAATACCATAAACCTGTACTAGATGGGCC
i cb4.chrX              I 298 I 100
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=0.000000
s ce10.chrX             3433358 79 + 17718866 AACGTAGATCAAAGAGAGTGCAAATTATAGGAGCAATACCGTGTTTTTAAAAATACCATGTCCTAATTTTAAGTGAAAC
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e cb4.chrX              8512191 100 + 21540570 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=-686.000000
s ce10.chrX             3433437 311 + 17718866 CAAACTGCG-AACTACTTTGTCAGTGCAATTTTATGAATTTTCAATATTAGGCAGATAATTGTCTCCAAGTAAAAACACAACATTTGTGATAAAAATCCCGCAAATACTGTGTAAATTTTTAAAAAAG--------TTGCCAAAATCGATGAATATTCCAAATTTTTAAGA---TAACCTAGCAAAAACAAGATTATAAAACCGGCAAGACAACATTTTTATAGTACAAAA---------TAAATTAGCGAA-----CTTTATTTGCAGAAAGTACCAT-TTTTTTCATTCGATTCTAAGA---CTCGTGAGGTTTCCTAC--AATTTTTACTAGAAATCAAC
s cb4.chrX              8512291 295 + 21540570 CAAATGGCACAACTTTTATAGCATTGTtcattttggcatttt--------------taattatttatgATTATAA--AAAGCACGTCTcatcaaaat---------------ggaatttgaaaaaaagattacagattacaaaaatcaa-aatttttcctgttttgtatgattttgaattaatggaaa----atcctaga-----------aatatttttaggacTCTAAAGCTGTCCCTGAAAATGTCGAAGCATGATATATTTCTATCTAGTACCGTAACTTGTCATGAAATATTACGAAATTTTGTTAGCTCTACTTATGAAATGTTATTGGAAA-CAAC
i cb4.chrX              I 100 I 106
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=0.000000
s ce10.chrX             3433748 107 + 17718866 TATCATAACTTAGGCAACAAAATCTGGCATAATTTAATCGTCGAACTTCAATTCTTTTTACCTGAGCAAAAATTGAGGAAGCTTAGCCGACTAGGTACCAAGACAGT
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e cb4.chrX              8512586 106 + 21540570 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=60.000000
s ce10.chrX             3433855 2 + 17718866 AA
s cb4.chrX              8512692 2 + 21540570 ag
i cb4.chrX              I 106 C 0
e caePb3.Scfld02_0      1853915 221 +  4147112 I
e caeJap4.Scaffold18194  644159 394 -   823664 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=-750.000000
s ce10.chrX             3433857 7 + 17718866 ACAATTA--
s cb4.chrX              8512694 7 + 21540570 --atttttc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1854136 7 +  4147112 ACATGTA--
i caePb3.Scfld02_0      I 221 C 0
e caeJap4.Scaffold18194  644159 394 -   823664 I
e caeSp111.Scaffold630  5613858 149 + 20921866 I
e caeRem4.Crem_Contig0   564607 400 -  4500979 I

a score=10611.000000
s ce10.chrX             3433864 145 + 17718866 ----TGCAACAAGAAAAAAGAAACGAGGGTACGGCGCTGTTT-----AAAATTGG----AGAAAATTGTTCAAATGAAATTTAT----------TTCTTGGCCGCTC--GCCAGAAAATAAAATTTTGTGAAGGGTTTGGTTAAAAACATGTGGTG----------T------------TAAAAACTTTTGT
s cb4.chrX              8512701 159 + 21540570 tccAGCTAGTACAGAATAAGAAA----ATCCTAGCTCAGTTTAGAGAAACATTGGAATTgggaaaatgttcaaatgaAATTTCC-------CCCTGCTCTTCGTACCGAGCCAAACAAAATAGTGC-ATCCCAAGCCAG-----------ATGGTG----------TCAAAATTAGTCCGAAACATATTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   565007 135 -  4500979 ----TGCAGTACGCAAGAAAAAG----AATCCGGCGGAGTTTAAGGAACAATTGG--------GGATGTTCAAATGAAATTTCCGTCTTTTGCCTGCTCGGCAGACC--ATTGAATGGGAGCGCGC--------------------------GGTG----------TCAAAACTAA---GCAAAATGTCTTG
i caeRem4.Crem_Contig0  I 400 C 0
s caeSp111.Scaffold630  5614007 146 + 20921866 ----CATAgtacacaaaaaagaa----aatccgGCGTAGTTTAAAGGAAAATTGG-------GAGatgttcaaatgaaatttcc----------ttCTTTGCGGCGA--GGCAGACAATAGTGCACTATTCAGAGTTTAGGATTCTG-GCATGGTG----------TCGGA--------ACAAGATTTTGAG
i caeSp111.Scaffold630  I 149 C 0
s caePb3.Scfld02_0      1854143 150 +  4147112 ----TGTAgtacac-aaaaagaa----aatccggCGCAATTT-----AAAATTGG-------GAGatgttcaaatgaaatttcc----------TTTCCTTTAGATT--GGCAGACAATAGTGCATTCTATAAAGTTAGAGCTCATG-GGAtggtgattttttgaatctca--------tcaAAATGTTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  644159 394 -   823664 I

a score=10122.000000
s ce10.chrX             3434009 152 + 17718866 AA----ATAAATCTTGAAATTAAA---ACGC--------GAGAAAAGGTACTCTC------------TTT---ATGCATGACTG------ATGCTTTCATTATTCGCACAATAAAAAACAAAAAAAG---AAATATCAATGAAAGTAAATTATTATTGTCTT------AACT---AGAA--------GTA------GAGTG---------AGCC------CA--------------TGCTACA
s cb4.chrX              8512860 178 + 21540570 AGAACAAAAGAATCAGAG---AAA---GCAA--------AAATAGAATTAAGTTCTTCTTCGTTTTGTTCTCACAGCTTGATCG------CTGTTTTCATTATTCATTGGATTCGAAATAAGAAGCG---AAAAAC---TACGAATAAATTATTATTGTTTT-----GAATGGATAGAAAAGGAAATGAA-----TGAGAG---------AACC------GA--------------cgcaaca
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   565142 203 -  4500979 ACGGTTTTAAAATCAGAA---TAG---ACAACACAACacagaagaaagaaagttc------------ATCACAATGCTCGATCG------CTGTTTTCATTATTCATTGGATTTGAAATAAGAAGCG---AAAAAC---TacgaataaattattattgtCTTGcggagaatg---agaaaaaaaaccgaa-aaattgagagataaAGAGAAATC------GACCATTTCATTCTTTCGCCATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5614153 188 + 20921866 TC----TTGAAATCGGAGAATTAGCGCGTTG--------TCAAATGTAGAATCTA------------ACTTGTACACTAGATTG------TTGTTTTCATCATTTATTCGATTCAAAATGAGAGGGT---GAAAAC---Tacgaataaattattattgtct--cggcgaaga---agaaaaaggaaaatgatgCTCAAAAG---------AATG----GGAaccatctc-tttttttgccaCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1854293 187 +  4147112 ACAA--TCAGAATCTAAAactaaa---atag--------aaaaaagaagaacttc------------tTCTCGATGCTCAAACG------CCGTCTTCATTATTCATTGGATTTGAAATAAGAAGCG---AAAAAC---TacgaataaattattattgtCTG-CGGAGATCa---agaaaaagcgaagaa------aaaag---------aacaaagcgGGACCATTTCATTATTTCGCCAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  644553 143 -   823664 -----aaaaaaattgttaaatgaa---aaat--------gaataaaaagaa----------------cTCTCTGTTCTTGAtcgtcatttttattttcattattcaT-GGATTTGAAATGGGAAACGAACAAAAAC---TACGAATAAATTATTATTGTCTC-----GACCA---GGACCAAGCtcg--------------------------------------------------------
i caeJap4.Scaffold18194 I 394 C 0

a score=-5938.000000
s ce10.chrX             3434161 39 + 17718866 TCGAATATTCATTGAGC----CCAA----------------------TATTTGGGA------------AATTAGAAC
s caeRem4.Crem_Contig0   565345 29 -  4500979 TCGAATATTCATTGAAC----CCAG-----------------------TTCTCGga---------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5614341 57 + 20921866 CTGATTATTCACTGAAC----CAAGA----AAGCTCCCCGGGAAAAaagattcgaa------------aattaaacC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1854480 67 +  4147112 TCGAATATTCATTGAACCTTACCAGA----AACCC------GaatagaatttcgaaatttcgccGTGGAATTAAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  644696 47 -   823664 gcggaaaaaaattgagc----ccCGATTCCAGTCCCGTCAG-------cttccaaa------------aa-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8513038 53 + 21540570 I

a score=88114.000000
s ce10.chrX             3434200 210 + 17718866 GAAAAAACTAAGGGGGAGACTAAAGACTA---------AATACAATT----------------GAATA----TTTAG-------------------TCTTGTCCCAATAGGAA---GAAAAACGTGTATAGGGAGA------GTCGAATAGAAAACT---GACAGCCGA-GCACAGC---AGAGCCAAATGCGGAGGAGAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTGAAGTGTGGG----------GACGGGG---GGTTAACACAAAAAAAAA-------TTGA
s cb4.chrX              8513091 224 + 21540570 -aaaaaaaCTAGTT---AAGAGGAGGCTG---------AATCttctt----------------gaata----ttttt------------------cctgGGTGccaaat-aaaaacaaaaaacgtgTG-TGAGCAA------AACGAAAGCAGCACTAGGGGAAGCTCA-ACACAGAAGGAGAGCCAAATGCG-----GAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTGAAGTATCGGACATGAGGACAACGGGACCCGGGGAAC-----GAAGAAAGCCTTGTTGA
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   565375 210 -  4500979 -caaaaattaaaat---ggcCGAAGACTG---------aatactttt----------------gaatt----tttttgt---------tcctctGCCCTTGtcccaatt-gaa---aaaaaacgtgag-AGGGAGA------ATCGAATGGAAAACT---GACAGCCGA-GCACAGC---AGAGCCAAATGCG-----GAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTGAAGTGTGGGAC----GGACGACGGGG---ggtgaac-----aaaaaa-------ttga
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5614398 190 + 20921866 -----------------GAGTAAAGACTG---------AAGACGCGT----------------GATTA----TTTTT-----------------GTCTAT-CCCGAATAGGGG---GAAAAACGTT---GGGAAGA------TTCGAAGGGAAAACT---GACAGCCGA-GCACAGC---AGAGCCAAATGCG-----GAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTGAAGTGTGGGACGGA-GGACAACGGGG---ggtgaac-----aaaaaa-------ttga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1854547 194 +  4147112 -----------------GAGCAAAGACTG---------AATACgttt----------------gaatatgttttttt-----------------ttctatgtccCAATA-GGG---GAAAAACGTGA--GAGGAAA------ATCGAATGGAAAACT---GACAGCCGAGGCACAGC---AGAGCCAAATGCG-----GAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTGAAGTGTGGGACG---GGACAACGGGg---ggtgaac-----aaaaaa-------ttga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  644743 233 -   823664 ---gaaaaaaaaat---gacgtgAGACCATTTTGTTCCAATTCATTTCCACTTCACGAGCCCAAAAAA----TGTTGGCAAACGGCAGTGCAACATCTTTGCCACAAATGGCG---GAGCAATGAGTGAAAAGAGACCaaagaatgaagaaaaaagt---gaCAGCTCG-GGAC------AGAGCCAAATGCA-----GAGGATTTGATTTAATTGAAGTGTGACACAAGTGTTTAAAGTGTTgt--------------------ggtgaa------aaaaaa-------tgga
i caeJap4.Scaffold18194 C 0 I 628

a score=2910.000000
s ce10.chrX             3434410 3 + 17718866 TGG
s cb4.chrX              8513315 3 + 21540570 TGG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   565585 3 -  4500979 tgg
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5614588 3 + 20921866 tgg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1854741 3 +  4147112 tgg
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold18194  644976 628 -   823664 I

a score=-5757.000000
s ce10.chrX             3434413  7 + 17718866 GCGCTGT-------------------------
s cb4.chrX              8513321 30 + 21540570 --GCAAAAACGAGAgaagagttgaaaaaaatg
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   565591  7 -  4500979 --ACACGA-----------------------G
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5614591  7 + 20921866 -aGCAAGA------------------------
i caeSp111.Scaffold630  C 0 I 10
e caePb3.Scfld02_0      1854744 18 +  4147112 I
e caeJap4.Scaffold18194  644976 628 -   823664 I

a score=16717.000000
s ce10.chrX             3434420 101 + 17718866 GATGTGGCCAAA-TTGAAACCTTTTGTC-------CGCATGACTTGATAGGCAT--------CCCAAACACTTTTTT--GGAATAAAATT-----------GAAAAACGCAAC-----A---TTTGTGGA--CTTTTAAA
s cb4.chrX              8513351 122 + 21540570 gatgtGACCGGATTTGAAACCTTTTGTCACTTTGACGCGTGACACAT-----ATGAATGAACACAAGAGAATTCACggcgaaattgaaaaatcgcaaCATTCAAAAGCGCAACaataga---ttttcatg----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   565598  83 -  4500979 GATGTGACCGGA-TTGAAACCTTTTGTC-------CACATGACTTGT-----AT-----------ACAAAATTTAtg--agaattgaa-------------taaaaacgcAAC-----A---TTTTGTGG----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5614608  94 + 20921866 GGGATGACCGGA-TTGAAACCTTTTGTC-------CGCATGACTTGA-----at--------acattcaaaaat-----gagaacaatA------------TGAAAACGCAAC-----A---TTTTTTggcaattttgaa
i caeSp111.Scaffold630  I 10 I 63
s caePb3.Scfld02_0      1854762 100 +  4147112 gatgtGACCGGA-TTGAAACCTTTTGTC-------CGCATGACTTGa-----at--------gaaatggaatttttg--ggaattgaaa------------tgaaatcgCAAC-----AATTTGTTTCGGTGGGTTTCAA
i caePb3.Scfld02_0      I 18 I 22
e caeJap4.Scaffold18194  644976 628 -   823664 I

a score=-2027.000000
s ce10.chrX             3434521 5 + 17718866 TTTAT----
s cb4.chrX              8513473 5 + 21540570 aatac----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   565681 5 -  4500979 AAGAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1854884 5 +  4147112 ----ttttt
i caePb3.Scfld02_0      I 22 I 100
e caeJap4.Scaffold18194  644976 628 -   823664 I
e caeSp111.Scaffold630  5614702 63 + 20921866 I

a score=-7295.000000
s ce10.chrX             3434526 101 + 17718866 ---AATTCAACACGCCACACAATGAAGTATGAATGAGCGGATTCTAAATTCAGGCAAACT------------------------------TTAAAACATTAGAGAGAATCTAAGAAAGTATCATCTGAAGTTTC
s cb4.chrX              8513478 126 + 21540570 cAGAATGAGTAGGACGACACAA--------AACTGggcattttttaaatgaaaccAAACCAGACGTGTTTGAGGTCATAGGTCTTGTTTGTAACAAAGCCTGAATAgatccaaaaatgtttcatatcAGTTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   565686  22 -  4500979 ---AATGGGATTGACTATTCGA--------AAT-----------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1854889 100 +  4147112 I
e caeJap4.Scaffold18194  644976 628 -   823664 I
e caeSp111.Scaffold630  5614702  63 + 20921866 I

a score=-27596.000000
s ce10.chrX             3434627 159 + 17718866 AGATATTT--------------CAGATATGAATT---AAAAAC---AATTAAAAAAAACCGGAAATTATCGAGGTGT-------------------CGGAGATATCGTTTA--AAC---------CAAAAATT-----------------------ACAGTT------------CAGGTAGATCAG---------------------------------ACaaatttttgaaaatttt-----------------atttgaagaagtctcatca--caaaatttgttcattCATAC
s cb4.chrX              8513604 272 + 21540570 ATATATTTTGGCTACTGTAGACcaatgaaacattttgaaaagttctattTCTAAAGAAATGTAACATTTGAAGGTATAGGGTTATATAATTTTCGCTGCATACATGAGTCATGATCTTGAATTTTGACAAAATC-AAAGTAACGTTTTTA------ACGACCAGGTTTTTATCGTAACTTAATCATGCAGTAGTTTGCGTAGAGTACCGTACAAACCAATCAAATATTTGGtgttttttag-----------------tttaaaagcAAGAttattctagatttttcggtttgtat
i cb4.chrX              C 0 I 91
s caeRem4.Crem_Contig0   565708 128 -  4500979 -TATATT------------------------------AAAAACtatgtttctaaaaaatggagacattaaaaaaaat-------------------tgaattcactagtca--------------gaaaaaat-----------------------------------------tgattggaaCATG--------------------------------TCAAAGTTTCAGCGATTGT-------------------------------GATTATTTGAGTAATTATCATTTGTAT
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      1854989 216 +  4147112 GAATATTTCGAATGGCTTGA--TAGTTAGGGATTCTCGAAAAc--tgttgatgaaaaaat--cacatgTGATAGATC-------------------CTTAACCAACACTTATCACA---------GAAATATTCTACAATAGGGACCTTGTCTGGTACTACC------------TACATAAGGCATTCAGGCTTATT----------------------CTAGAGTTTTAGAATGTTTTGGGCGCCATTCATCACatcttgaaaaatcagatca------aCGTTAACGT------
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold18194  644976 628 -   823664 I
e caeSp111.Scaffold630  5614702  63 + 20921866 I

a score=-6213.000000
s ce10.chrX             3434786 38 + 17718866 -------------------------------------------TGATTGATCACTAGTCTGtggttaagaacgtgctgtcg
s caeRem4.Crem_Contig0   565838  9 -  4500979 -----------------------------------TCTATG-------------------------------GTT------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1855205 80 +  4147112 TAGCTGAGGGTACTCAaatcggaccgaaaaaacaatCCAAGTATGA-AACTCACTACTTCCTAATACAGCACGTTTTCTCA
i caePb3.Scfld02_0      C 0 I 128
e caeJap4.Scaffold18194  644976 628 -   823664 I
e cb4.chrX              8513876 91 + 21540570 I
e caeSp111.Scaffold630  5614702 63 + 20921866 I

a score=-379.000000
s ce10.chrX             3434824 50 + 17718866 tcacatttttttggggaataaactcgcgcattttttgtagatcaaaccgt
s caeRem4.Crem_Contig0   565847 37 -  4500979 -----TTCCTTTAAAGAA-------ACGTACCTTAACTAGAACCTGCCa-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1855285 128 +  4147112 I
e caeJap4.Scaffold18194  644976 628 -   823664 I
e cb4.chrX              8513876 91 + 21540570 I
e caeSp111.Scaffold630  5614702 63 + 20921866 I

a score=-2909.000000
s ce10.chrX             3434874 73 + 17718866 aatATGTAAATTAAAGAGCAATTTAATTTAAAATTCCAAAGTTTTCT-----------ACGTGTAATCTAAAATCTGTTAACCT
s cb4.chrX              8513967 81 + 21540570 aaattgtcaactgatgaaatattttccATAATATTCCTAACATTTTATGAGTTGATAAATTTCTAATGt---ctctctcaaaat
i cb4.chrX              I 91 C 0
s caeRem4.Crem_Contig0   565884 40 -  4500979 -----atcaa--aattaga----------aataaaCTTAATCTTTCA---------------------------CTATCAGAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1855285 128 +  4147112 I
e caeJap4.Scaffold18194  644976 628 -   823664 I
e caeSp111.Scaffold630  5614702 63 + 20921866 I

a score=-15834.000000
s ce10.chrX             3434947  95 + 17718866 ------------------GTTGAAGTCACGACTATAGAATTTTGTGATTTGCACACAAAAAAA-------------GCTCAAAAAAACTTTTTGAAAATTT---CGTTTTTAAATTAAACTGAACTTGT
s cb4.chrX              8514048  96 + 21540570 -------tttca------attacaa-----aaagtataatttttttgttc-cgcataggaa-------ttttcag-gcaaatctcaaaattctgaa-atac---ttttttgaagaCTC--AAAATTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   565924  46 -  4500979 -------ATTCA------TTTGAAA----------------------------CATA---------------------------------CCTGAATATGT---TTATTTGTAG------CAAAGTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1855413 112 +  4147112 ACTGaagttttacagttttttgaaa-----gttgtttcaccttttcag-----aataaaaaaaacaactttgtagtgcTTGAATCA----ATTGAATATACGCTCTACTTCAAGATAAG-Acaagtt--
i caePb3.Scfld02_0      I 128 C 0
e caeJap4.Scaffold18194  644976 628 -   823664 I
e caeSp111.Scaffold630  5614702  63 + 20921866 I

a score=-9729.000000
s ce10.chrX             3435042 185 + 17718866 ---------------------------------------------ACCGGAGAATGTA--------------------------CGAATCAAGATATATTCACAATGATTATATCCTTGATAATAGCACGTTTTGACAAGGTT-------------------------------TTTGTCTCTTTTTT-----TTATTTTTTGGT--------CTGAAAAAAACAGATAAAGATTAATTGTTT-GAATTTGGGGATAAGATTAAACATATTGCAAAACG-------GAAACTAGAC-AGAGTCACGTGA
s cb4.chrX              8514144 275 + 21540570 CCTTTCTACCGAAATACAAAGCATGTTTGTGAGGAACTTTAGcatttcatgaattttattTCACTCAGAACTTGAAATTCATTGTTTCGTTGATCTTACC-----TGATT-TGTTTGGCACTTCCA-ATTATCCAAGTTTGAC-----CGTATAAATTCTTCTCTCAgctagc-tttttttttcttctatgt-TGCTTATTATCT--------CTGTAACACAG-AAAAAAGATTAACTGTTT-TAAT------AAAAGATT----ATAATCTGGAACGGATGAGAGAAACTAGACAAAGGTCACATGG
i cb4.chrX              C 0 I 69
s caeRem4.Crem_Contig0   565970 126 -  4500979 c-------------------------------------------ttgcaaaaatttca------------------------------------------------------------------------------------------------------------------a-ttttttcttattct-------ctttttctgt--------ctgaaaaaga--aatgaagattaATTGTTT-GAATCC-CAAATAAGATT----ATATTCCGGAACGAAT--ACGAAACTAGACAAGGGTCACGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5614765 183 + 20921866 -------------------------------------------actgCAGAGAAC--------------------------------------ACATACC-----TGAATATGTTTAT--------------------AGGATGTTTATGACTTGAACCTCTTCCGTGTTCactttttccttgtttct-----tattctttttgttgcGATAGCTGGAAAACAG-GATAAAGATTAATTGTTT-GAATTC-GGAATTAGATT----ATATTCTCAAAC--------AAAACTAGACAAGGGTCACGAGA
i caeSp111.Scaffold630  I 63 C 0
s caePb3.Scfld02_0      1855525 196 +  4147112 -----------------------------------------------cgaaaaatata---------------------------CACTCGAAACATACC-----TGATtatgtttgtttcttt-------tccaacAAGGAC-----TGGCTTATACTTGTCTGAAGTTCaa-ttttccttgtttctttatatatgtttttttc--------ctgaaaaacag------aGATTAACTGTTTGGAATCT-CAAACGAGATT----ATTATCAGGAACGGAT--AAGAAACTAGACAAGGGTCATGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  644976 628 -   823664 I

a score=-797.000000
s ce10.chrX             3435227 86 + 17718866 AGAAAAATTTAATCA--AGTAATAG-GATTGACATTTTCACCGAATGCCGTTCAGCTTATTACTGGAAATTGGCATATTC-TAGACCTAG
s caeRem4.Crem_Contig0   566096 64 -  4500979 -----AGATTAGTGATGAACAAAAG-GATTGATATTTAGGAGGAATAGCGTTCG----------TGTCTGAACCACATTC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5614948 57 + 20921866 -----GGATTAGAGTATAACAATGA-GATTAATATTTGGAAGAGATAGCGTTC-----------------AGTCGAATTC----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1855721 62 +  4147112 -----AGATTAGTCGTGAACAAAAAGGATTGATATTTAGAAA----AGCGTTca----------aggaaaaatggaatgct---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  644976 628 -   823664 I
e cb4.chrX              8514419 69 + 21540570 I

a score=0.000000
s ce10.chrX             3435313 1 + 17718866 A
e caePb3.Scfld02_0      1855783 0 +  4147112 C
e caeJap4.Scaffold18194  644976 628 -   823664 I
e cb4.chrX              8514419 69 + 21540570 I
e caeSp111.Scaffold630  5615005 0 + 20921866 C
e caeRem4.Crem_Contig0   566160 0 -  4500979 C

a score=68481.000000
s ce10.chrX             3435314 266 + 17718866 ATCGGAGGTTTGTAATCAGG---AA---TTCGAATGGG---TGGGGGGTTAA---AAACGAGTGAAAAAAACGTAAGCT--AAACGAG-----AAAAAAAACACACGGGGAAAATGGA-G-TGAAGTGTTCC-----GTTGTGTGAG----AGGACCCT--AGAAGCTAATAAGAAGTGAGTGAGAA---------GCAGCAAAAGTGAAAGGAAAATGAGAAGAGCGAC---GTTGGGAAGTGAGCAGTGGTGAGCAGGAACCGGTG-------------AAAAAGAAATAAAAACGAAACGACGAATAAAA-ATTTGAAATT
s cb4.chrX              8514488 286 + 21540570 ACTCTGAGATTGGCATCC-----GATTCGATGAACACT---Tgagatgtgaaaaaaaacggaagaaaaaagacc---ctagaagcgaa-----aaaaaaa--------caaggacaAG-G--GAAGTGTTCCGTTGTGCTCTCTGAAGGAGAGGACCCT-AAAAACCTAATAAGAAGTGAGTGAGAAAAGGGGGAGGGGGCAaaagtgaaaagaaaatgagaagatcGACGATGTTGGGAACCGAGCAG----gaaaagaaaccgatgccagaaccga--aaaaaagaaataaaaccgaag----aaataaaaattttgaattt
i cb4.chrX              I 69 C 0
s caeRem4.Crem_Contig0   566160 235 -  4500979 ----TGTAAGTGtcattccg---ga---aaaaaacact--------------gaaaaacgGAAGAGCAGAGG------TAGAAAcggaagaataagaaaa--------caagGACAAACC--GAAGTGTTCC---------------------GACCCC-TAGAAGCTAATAGCAAGTGAGTGAGAA---------GCAGCAAAAGtgaaaggaaaatgagaagagcGAC---GTTGGGAAGTGACTAG---TGAGCAGGAACcggtg------------aaaaaagaaataaaaacgaaacgacgaataaaatttttgaaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5615005 221 + 20921866 ----------TCTCATTTag---aa---gaacgac--------------------aaaaggaaagaaaagg-------t--gaacaaa-----aagaa----------aaaggataga-a--gaagTGTTCC-----GTTCTCTGTGTGTAAGGACCCT--agaagttaataagaagtgagtgagaa---------gcagcaaaagtgaaaagaaaatgagaagagcaa-------gaaaagtgaCTGG---TGAGCAGGAACcggtg-------------aaaaagaaataaaaacgaaacgacgaataaaa-atttgaaatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1855783 241 +  4147112 -----GAGATTGTCATCAGG---AA---CACAGACTTT-----------------GCACGGAATGAAAAAGCGt---ct--gaacaaa-----aagagaa------gtaaAAAATGGC-AGTGAAGTGTTCC-----GTTCCATGTG----AGGACCCT--AGAAGCTAATAAGAAGTGAGTGAGAA---------GAagcaaaagtgaaaagaaaatgagaagagcgAC---GTTGAGAATTGACTGG---TGAGCAGGAACcggtg---------a--aaaaaagaaataaaaacgaaacgacgaataaaa-ttttgaaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  645604 266 -   823664 -ATCGAAAATTTGCattcagtgaaa---aaaaaactgtaaacgagggaagaacataaatgggtgtgaaaaacga---ca--aagaaga-----agaaaaa--------ggaggaCAGA-G-TGAAGTGTTCT-----GTTGTGTAAG----AGGGTTCTTTAGAAGGAAATGAGAGCTtagaaaaat---------aaagtaaaaagcgagaaataaaaaaaaacgggaa---attgAACCGGGAGGGA---ATGACAGAAATTTCtg---------actggaaaaaaaactggaaaaaaatagcaaaagtaa-gttggaattt
i caeJap4.Scaffold18194 I 628 I 338

a score=825.000000
s ce10.chrX             3435580 15 + 17718866 GCCAAA-AAGAATCGA
s cb4.chrX              8514774 16 + 21540570 tcaatggaAACGAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   566395 16 -  4500979 gagaaagaagaatcga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5615226 15 + 20921866 gagcca-aagaatcga
i caeSp111.Scaffold630  C 0 I 171
s caePb3.Scfld02_0      1856024 15 +  4147112 gatgaa-aagaattga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  645870 338 -   823664 I

a score=186.000000
s ce10.chrX             3435595 13 + 17718866 CTCGGAATAGAAT
s cb4.chrX              8514790 12 + 21540570 GAGGGATCAAGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   566411 13 -  4500979 aaaggaaCAGAAT
i caeRem4.Crem_Contig0  C 0 I 1240
s caePb3.Scfld02_0      1856039 13 +  4147112 atagaaatagaat
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold18194  645870 338 -   823664 I
e caeSp111.Scaffold630  5615241 171 + 20921866 I

a score=1130.000000
s ce10.chrX             3435608 41 + 17718866 ATAATTCGGGT--TCAGCCGCATGGAAGATTAATATTTTAGTT
s cb4.chrX              8514802 43 + 21540570 AGAAATGGGGTGAACATCTActaggaaaatgaaatttccaatt
i cb4.chrX              C 0 I 135
s caePb3.Scfld02_0      1856069 36 +  4147112 aGAGGTCGGG---ATAGATGCATggagaata----ttttattt
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18194  645870 338 -   823664 I
e caeSp111.Scaffold630  5615241 171 + 20921866 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=219.000000
s ce10.chrX             3435649 6 + 17718866 TGTTAA
s caePb3.Scfld02_0      1856105 6 +  4147112 tagtAA
i caePb3.Scfld02_0      C 0 I 181
e caeJap4.Scaffold18194  645870 338 -   823664 I
e cb4.chrX              8514845 135 + 21540570 I
e caeSp111.Scaffold630  5615241 171 + 20921866 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=0.000000
s ce10.chrX             3435655 407 + 17718866 GGCAACTTCGTACTAGACGGAAATTGAAATAAAAGTGAGTGTGTTGTCAAACTGAAATGTACGGCAATCAAAGAAAATTGAAAAAAAAATTCCTTAGAAATTTATTCATGAATTTGTCattatattttttaaaatttaaattaCGCCAGTAAAAATGTTTCCGAAATATTACAGAAAATTTGAACAAAAACTCAAAAATGTTTCAATTTTTTATTGCAATTGTACTAATTCGGCAGTTCACCAAAACTTTGACTCAAAAATTTTAAAATATCTAACAATTTTTAACGTGTTTTATTATGATATGCAGTCATTTTAAACTACTAAAAACTTTTTTTTCAGGAAAAAAGTTTTTTGATATAATAATTTCACAAATTATTTAAAATCAATTCCAAAATAACATGGGAAAA
e caePb3.Scfld02_0      1856111 181 +  4147112 I
e caeJap4.Scaffold18194  645870 338 -   823664 I
e cb4.chrX              8514845 135 + 21540570 I
e caeSp111.Scaffold630  5615241 171 + 20921866 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=831.000000
s ce10.chrX             3436062 67 + 17718866 ATGCTCCAATATTCCCACATAAAATGTTTCCGCGAAAAAAAATGTATCTTTGTCATTTGAAGAAGCC
s caeSp111.Scaffold630  5615412 60 + 20921866 ATATTCCATTATTATCGTTCAAAA-------GCAAAAGGAAATATTCAGATATCATTTTTCGTCGTC
i caeSp111.Scaffold630  I 171 C 0
e caePb3.Scfld02_0      1856111 181 +  4147112 I
e caeJap4.Scaffold18194  645870 338 -   823664 I
e cb4.chrX              8514845 135 + 21540570 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=-702.000000
s ce10.chrX             3436129 14 + 17718866 AAGGATCAATATGC---
s cb4.chrX              8514980 14 + 21540570 aaaaaccaaaatcc---
i cb4.chrX              I 135 C 0
s caeSp111.Scaffold630  5615472 12 + 20921866 -----CCGAAACTGAGC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1856111 181 +  4147112 I
e caeJap4.Scaffold18194  645870 338 -   823664 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=2046.000000
s ce10.chrX             3436143 13 + 17718866 GAAATTCAAACCG
s cb4.chrX              8514994  9 + 21540570 aGAGCTCA----C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5615484 13 + 20921866 GAAATTCAAAGCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1856292 13 +  4147112 gaaattcaaagcC
i caePb3.Scfld02_0      I 181 C 0
e caeJap4.Scaffold18194  645870 338 -   823664 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=26571.000000
s ce10.chrX             3436156  94 + 17718866 CAAGTC----TTGATACA-CCAGTGAATTCTGAGA---------TCCGGGCCGTTATTTCACTA-----AAGAAA----AAAAAACCCGCAAACCCCAAATGACTTTCGCACACTT-----------T
s cb4.chrX              8515003 112 + 21540570 CACATA-TTTTCGATACACCCAGTTAATGTCGATGTGCTCGAATTCCGAATCGTTATTTCACAT-----AAAAACCCAAGAAGAA----------CCATATGACTTTCGCACACTTTTCGTCGCAAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5615497 103 + 20921866 CACATCTTTTTTGATACA-CTAGCCAATGctgaga-----aaaatcaaagtcgTTATTCCGCAT-----AAAAAC----GAAGAA----------CCATATGACTTTCGCACACTTTCCGTCGCAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1856305 104 +  4147112 CACATCTTTTTTGATACA-CCAGTGAATGCTGAGA-----AAAATCAACGACGTTATACCACAT----AAAAAAC----CGAGAA----------CCATATGACTTTCGCACACTTTCTATTGCAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  646208  88 -   823664 CACGTT----TTGATTCG-CCACTGAATTTTGTTG----------TCTTGTCTTCATTTCACAATAAAAAAGAGC----CAAGAA----------CCAGATGACTTTCGCACACTTT-----------
i caeJap4.Scaffold18194 I 338 I 1078
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=14506.000000
s ce10.chrX             3436250  91 + 17718866 GTGACTTT---------------------------GAGCCAGT------ATGCCTCATTCAATGAAAATA-----AAA---------AGTGGGTGGAAGGTCAAAAGATCTTG----GGGTAAGTGACCACATA-GTTGAGCA
s cb4.chrX              8515115 123 + 21540570 GTGACTTCTTGGTTAGTAGGACAGAGAGATAGAAAGAGTCGGT-------GGGTCTATTCAATAAGACAA-----AAAGTGGTTGGATATGTGTGAAAGGTCAAAAGTGATTC--------TAGTGACCACATTAGATGAGCA
i cb4.chrX              C 0 I 1478
s caeSp111.Scaffold630  5615600  95 + 20921866 GCGACTT----------------------------GAGCCAGT-------AGATtcattgaatgaaataaCAGATAGA------------GGGTGGAAGGTCAGACGAACCACAGAAGGGTTAGTGACCACACC-GATGAGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1856409  97 +  4147112 GTGACTT----------------------------GAGTCAGTCAGTAAGGGAcccattcaataaaaaaa-----aga------------gtgtggAAGGTCAAAAGAACCACAGGAGGGTAAGTGACCACATC-GATGAGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=-226.000000
s ce10.chrX             3436341 8 + 17718866 GTCAACAA
s caeSp111.Scaffold630  5615695 5 + 20921866 CTCAA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1856506 8 +  4147112 CCCAATGA
i caePb3.Scfld02_0      C 0 I 1677
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e cb4.chrX              8515238 1478 + 21540570 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=545.000000
s ce10.chrX             3436349 35 + 17718866 AAATGTGCAAGAGTGAGC------GAAATTTGAAAGAAAAC
s caeSp111.Scaffold630  5615700 28 + 20921866 -------------TGAGCACCcaggaaaattgaaaaacaac
i caeSp111.Scaffold630  C 0 I 2058
e caePb3.Scfld02_0      1856514 1677 +  4147112 I
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e cb4.chrX              8515238 1478 + 21540570 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=0.000000
s ce10.chrX             3436384 1332 + 17718866  
e caePb3.Scfld02_0      1856514 1677 +  4147112 I
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e cb4.chrX              8515238 1478 + 21540570 I
e caeSp111.Scaffold630  5615728 2058 + 20921866 I
e caeRem4.Crem_Contig0   566424 1240 -  4500979 I

a score=1002.000000
s ce10.chrX             3437716 328 + 17718866 AAATATGCCGAAGAAAAATTAAAATGGCATG--TTCTGGGTTTTGAATTACAGAGAAA-----AACGATGACGTTATGAAAGGCTAGTGAGACC-------CATTAAG--CTGGAACATGTGT-----TCTTGAATTCTAAAAAATAGCGGCTAAAAATAA------CATATTT-ATTTACACCCCTTTTGTTAATCTTTC--TGTTCGCTTTTTTTATATAAATCTT---GTTTAAATGAAACGAATCTCTTGTTTAAAC-AATAAATT---------------TTTGTTGAGCACTGCGTAGTGCAAA-------------------------AAAAATTGAAATTTCAAATTTAATAATGGAGTTTTGAAGATAAC---AATTTTGCTAATAGTAAGTTTTA
s caeRem4.Crem_Contig0   567664 390 -  4500979 AAGTATTCaaaaggaaatttgaaatgacaTGCATGTCAGGTTTAGAATTACagagagaggagaaaagatGACGACATCAA--GTTTCTCGGAACAAATCCACATTGAGaactgagaaaaatgtggaCGTATGAGATTCTAGAA----GCAATTAAACAAAAGAATTCAATATTTGATTTGC---TCAGTCGTTGATAGTTCAATGTTTACATCTTggat-taaattttcaaatgaaaatgacttggacattttgcagaaatgaacaaattacAGGAAAAAACTAGTTTGCTT-GCTCCCGGTTTTGCAGatctctaattttttattagtCATCATCagaatt-aattttaaaatttaagcA---ATCTTTGATATTAACTGAGATgttatcaaaaactaaaatta
i caeRem4.Crem_Contig0  I 1240 C 0
e caePb3.Scfld02_0      1856514 1677 +  4147112 I
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e cb4.chrX              8515238 1478 + 21540570 I
e caeSp111.Scaffold630  5615728 2058 + 20921866 I

a score=-1311.000000
s ce10.chrX             3438044 28 + 17718866 CGGAACATGAAATGAACTAAAAATCGGA-------
s caeRem4.Crem_Contig0   568054 35 -  4500979 caGTATTCCCATTGGactacatttcaaaaactaga
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold630  5617786 23 + 20921866 CAGAAactcaaatgaa---------agaaaat---
i caeSp111.Scaffold630  I 2058 C 0
e caePb3.Scfld02_0      1856514 1677 +  4147112 I
e caeJap4.Scaffold18194  646296 1078 -   823664 I
e cb4.chrX              8515238 1478 + 21540570 I

a score=600.000000
s ce10.chrX             3438072 1 + 17718866 G
s cb4.chrX              8516716 1 + 21540570 g
i cb4.chrX              I 1478 C 0
s caeRem4.Crem_Contig0   568103 1 -  4500979 g
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold630  5617809 1 + 20921866 g
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1856514 1677 +  4147112 I
e caeJap4.Scaffold18194  646296 1078 -   823664 I

a score=12033.000000
s ce10.chrX             3438073 30 + 17718866 AACAAATGCTTATTGGCCA-AAAACTGCCTC
s cb4.chrX              8516717 30 + 21540570 aaaaaaaacttattggCCG-AGAACTGCTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   568104 30 -  4500979 aaaaataagttattgGTTG-AGAACTGCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5617810 29 + 20921866 aagaaaaacttattgaatg-aaaattgctT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1858191 30 +  4147112 aaaaagaacttatTGGTCGAAAAACTGCTC-
i caePb3.Scfld02_0      I 1677 C 0
e caeJap4.Scaffold18194  646296 1078 -   823664 I

a score=122692.000000
s ce10.chrX             3438103 155 + 17718866 GAAGGCTAATAGAGGGTAACATGC-ACAGAATGAAGTCACATCACTGGCAATGTTTTGCGCGTCCCTCGGGGCATTTAGTCT-CATCCGTTTTCGCCGTGGTCAATTCAC------GCAGTT---TGGTACCCTCT-------TTCTCTTGTTTTGAT--------AAAATATTCAAA---TTT
s cb4.chrX              8516747 169 + 21540570 AAAGGCTAATAGAGGGTAACAT---GCAGAATGAAGTCACATCACTGGCAGTGTTTTGCGCGTCCCTCGGGGCATTTAGTCT-CATCCGTTTTCGCCCCGGTCAATTCGTCGGCGGGCAGTTTTGTGGGACCCCCTTCAGTTTCTCTGTTgatttgat--------aaaatattcaaa---ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   568134 152 -  4500979 GAAGGCTAATAGAGGGTAACTT---GCTGAATAAAGTCACATCACTGGCAGTGTTTTGCGCGTCCCTCGGGGCATTTAGTCT-CATCCGTTTTTG-CCCGGTCAATTCGC------GCAGTATT-TGGGACCTC---------CTCTCttgttttgat--------aaaatattcaaa---ttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5617839 153 + 20921866 GAAGGCTAATAGAGGGTAACAT---GCTGAATGAAGTCACATCACTGGCAGTGTTTTGCGCGTCCCTCGGGGCATTTAGTCT-CATCCGTTTTCA-CCCGGTCAATTCAT------GCAGTT---TGGGACCCTC--------ATCTCTTGTTTtgat---------aaatattcaaattttct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1858221 154 +  4147112 GAAGGCTAATAGAGGGTAACATGTAGTAGAATGAAGTCACATCACTGGCAGTGTTTTCCGAGTCCCTCGGGGCATTTAGTCT-CATCCGTTTTCA-CCCGGTCAATTCAT------GCAGTT---TGGGACTCCC--------ATCTCGTGTTttgat--------aaaatattcaaa---tac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  647374 151 -   823664 GAAGGCTAATAGAGGGTAAAAG---ACAGAATAAAGTCACATCACTGCGCATGTTTTGTTCGTCCCTCGGGGCATTTTACATGCCTTTGGTGGCGCTTCAGTTCATACCC------GCAGAC---------------------AATTCTTcttttgattgaaaaaaaaaacattttaa---ttt
i caeJap4.Scaffold18194 I 1078 I 683

a score=-15037.000000
s ce10.chrX             3438258 305 + 17718866 GCTGCCTTCTTTAGAATTTCTCACCGCAGATCAGCTGTCAAATGAAGAACAAC-AATGAAATAGGGTTAGAGGAGGAAGAAAAAACTCAAAATATGAATTTTTTGATAAC-TGTTCGCAGATCAAAAAGTTTCACTTTTGAAGTTT--------ATATTATATATTGG-------------------------------TTAGTGA----AAGTTATCATGCTATCA----------------------------------TAAAAAAAGTA-------------------TACGTGAC-AAGAAGAAGATCACAAA-----TGAGTCGA----------AAATGAGCTCTTTAAGTAGTC--------------------------------------CTCGACGGA---CTCTTGGGTTTCCTGAATAGTGAAGTAGA-ACAGATCACACGAAAGCTTT
s cb4.chrX              8516916 208 + 21540570 g------tgaagaacct----------------------------------aa-tgaaaggaacggcgaaagaagaaaaaagaagcgaaag-------------gtcaataaa--------------aattctatttctGCTCTTCCTCCTCAATTTTGTTCAATTGT-------------------------------TTGGCG-----GAGACACCAGATGTTCT--------------------------------------CAATTTA--------------------ATGCTATTGCAA--------AAAGCG----AGACTCAATGAGAATCCAAAAC-------------ATTAAACATTAC------------------------------GTGACTAAA---------------CAGAGTGAAATATAAAA---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   568286 324 -  4500979 a------aacacAACATTTCCCACC------------CCCACTAGAGGATAAA-GGAAAAGGAAAtccaaagaa-aataatgaagcGGAAATTATG-----TTTGGCAGCATATTC-----------AATTccattattattttct--------tcttttttcattgt-------------------------------ttagGGATATTGGCATAACTCGTGTTCT-----------AAAAGGGCAAACCgagaagaaatcaagaaattcatGAA---------------TACGTGACTGGAAAGAAGATCAAAAGG----AGGGTCGA--AAAACTTAAAACTCGTTCTTTAAGTAGTACATATTTC------------------------------CTAAGTCAAACCCTCTCCGATTTCCTGAATAATGGATAAAGAGCAGCTCAAACGAAAGCTTT
i caeRem4.Crem_Contig0  C 0 I 246
s caeSp111.Scaffold630  5617992 362 + 20921866 a------gctttgaaatttccCACT------------CCTACTTGAGgacaaagaagaaggaaatgcgaaaaga-aataatagaGCGGAAATTCTG----TTTTGACGGCATGCGC-----------TCTTCGATTATTATTTATTCGTC----TCTGTCTCTATTGTTTAGGATATCTGCCTAAAaatattcgagaaatcaGCATT------------------------AGAAGTGAGAAAAACATAAtaagaattgagaaaagaattcaagaaTAGAACGCTCGCGGTTACGTGAC-TAAAATAGGATCAAAAAG----CGGgtcaa--aaagtttaaaacTCGTTCTTTAAGTAGTCTATGTTTCC-----------------------------CTAAGTCGGGTCCTCTCCGATTTCCTGAATAATAGATTGAA-GCTGCTCTCACGAGagcttt
i caeSp111.Scaffold630  C 0 I 206
s caePb3.Scfld02_0      1858375 379 +  4147112 a------GCTTTGAAATTTCCCACT------------CCCACTGGAGGATAGA-AAGGCGGAAatgcaaaagaa-aataatgaagcgGAAATTATG----TTTTGATGGAATATTC-----------TTTCCcattattatt------tc----tttttttctattgt----------------------tcagGGATATTGGCACTT------TATCACGTGTTCTTGCAATCAGTTGCAAAGGGCGAGATTGACTGAATCAAGGAATACCCGAATA------TCAAAACTACGTGACTTaaaagaagatcaaaaagcAAACGGgtcga--aaagtttgaaacttacTCCTTAAGTAGTCTATGTTTTCTAAGTTCATGCTTCCCAAGTCCATGCTTTCTGAGTCGGGTTTTCTCCGATTTCCTGAATAATGGATCAGA-GCGGCTCACAcgaaattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I

a score=-19663.000000
s ce10.chrX             3438563 357 + 17718866 GTGCTATTTTGGAGTTGAAGCTAGGAGTAGTTGGAAATCGATAAACTTTTGTTTTAAA-------AATGTCAGAGTTGCAAGGTAACATGAACTATAAAAGTTATGGTTCTTACTTTTGTTACTTCAAAAATTGAAAGGAAATTTAATTTGTGTGCTATCGCATGTGAATGACGATTTT-TAAAATAAAAGTTAAAAG--TGGAAATCCATTTTTACAAATTTAGTTTT----------AAAAAAAGTCGAAAAATATTATAACTTAAGAGGGTCAGAACTCACAATTGCCCGTAGAAGAAATGATTTATGAAAAAACAGATTGGTTCTAGTTTTGGGGAAAAACAATCAAATATTAAAAACGGCAAAGTCACATAT
s cb4.chrX              8517124 251 + 21540570 ---------TGAAGATCAAAAAGcgagttcaaaaaaa-----ggagTT---TTTCGGAGAGGACCCATGTTTCGGGT--------------CCTCTCCGATT-----TCCTGAATAATGGATCTTCCAGACACGAAACGCATTCT--------------------------TCGATCCTCTGAAATGACATTTCAAAG--t-----cttatttttctagattctgtgcacttttaggaaaaaaagttaCGAA---------GATTCTGATGAATTTG-----------------AAATCAAGTGAGTGTTAGCTAATCA----------------AGCGAGATAAGCTCGAAAGTTATCGAT---------------
i cb4.chrX              C 0 I 6
s caePb3.Scfld02_0      1858754 187 +  4147112 ---ctcttttg----tttcattGCGAGCCAATGACA---------------TTTCAAA-------CATATTTGAACT-------------------------------------TGATCGGACAGTTAGAACCGAAACATAGT-------------------------------------TGGAATGTCCTTTCGATGCTT-----CTCAGCcaataaaatttcatattcCAGTTCG--AAATAGcttcgaa----------atttggaaaagtgtG-----------------GGAGGAGGGGA---------------------------------AAAACATGagtaaaaattg--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I
e caeSp111.Scaffold630  5618354 206 + 20921866 I
e caeRem4.Crem_Contig0   568610 246 -  4500979 I

a score=253.000000
s ce10.chrX             3438920 16 + 17718866 TTTCTAATTGTGTTTT
s caePb3.Scfld02_0      1858941 13 +  4147112 tttctaaGTA---TCt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I
e cb4.chrX              8517375  6 + 21540570 I
e caeSp111.Scaffold630  5618354 206 + 20921866 I
e caeRem4.Crem_Contig0   568610 246 -  4500979 I

a score=-22366.000000
s ce10.chrX             3438936 508 + 17718866  
s cb4.chrX              8517381 360 + 21540570  
i cb4.chrX              I 6 I 5
s caePb3.Scfld02_0      1858954 250 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I
e caeSp111.Scaffold630  5618354 206 + 20921866 I
e caeRem4.Crem_Contig0   568610 246 -  4500979 I

a score=0.000000
s ce10.chrX             3439444 8 + 17718866 CTTGTCAA
e caePb3.Scfld02_0      1859204 0 +  4147112 C
e caeJap4.Scaffold18194  647525 683 -   823664 I
e cb4.chrX              8517741 5 + 21540570 I
e caeSp111.Scaffold630  5618354 206 + 20921866 I
e caeRem4.Crem_Contig0   568610 246 -  4500979 I

a score=18479.000000
s ce10.chrX             3439452 38 + 17718866 --------TATGACTAATCGGTTTCACAAGA----------TAAAAACAATTGTTC
s cb4.chrX              8517746 47 + 21540570 ---------ATGACTAATCAATTTTATAATAGAAGCTTTGAAAACAACAATAGTTC
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   568856 53 -  4500979 TCATCACCCATGACTAATCGGTTTCATAAGACAAAATT---GAACAAcaatagttt
i caeRem4.Crem_Contig0  I 246 C 0
s caeSp111.Scaffold630  5618560 45 + 20921866 --------tatgacTAATCGTTTTCgtatgatgaaaat---gaacaacaAGAGTTT
i caeSp111.Scaffold630  I 206 I 3
s caePb3.Scfld02_0      1859204 44 +  4147112 ---------ATGACTAATCGGTTTCCTAAGATAAAACT---GAACAACAATAGTTC
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold18194  647525 683 -   823664 I

a score=-2029.000000
s ce10.chrX             3439490 30 + 17718866 ----AAGTGAGAACGAAATCTAACAAAAAATCGG---
s cb4.chrX              8517793 20 + 21540570 AGGAAATAGTGA-------TTtactga----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   568909 29 -  4500979 a-aaaattgtga-------ttgaCTCAGACTGGGGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5618608 26 + 20921866 ----AATCGTGA-------TTGACTGAGTCTAAGAGC
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_0      1859248 29 +  4147112 I
e caeJap4.Scaffold18194  647525 683 -   823664 I

a score=20223.000000
s ce10.chrX             3439520 91 + 17718866 CTAAAAACACCTAGATTGTGAAACGAGCACCCAAACGTG-TTAGACAGCG-GTTATTTGAAATTT---------GAAATCTCTATC--AAGTG----GGTCATGAGAC
s cb4.chrX              8517813 65 + 21540570 ---aaaacaagaaaagtgTG--------ACTGAAA------------------------AAATCTCGTCTGTTGGGAAT--AAACC--AAGTT----GGTCATAAGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   568938 92 -  4500979 CTGAAAACACGTACAATGTGACC----CACTGAAATGCG-CCAGACAAGCGGCCATCT-GAATTTTCTCCGCTAGGAAT----ACC--GAGTT----GGTCATAAGAC
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold630  5618634 94 + 20921866 CTGAAAACACGCACAACGTGACA----CGCTGAAATGTGCCCAGACAGTGTGATATCTAGAATCGAATCCGTTAGGAAT----ACC--AAGTT----AGTCATAAGAc
i caeSp111.Scaffold630  C 0 I 18
s caePb3.Scfld02_0      1859277 98 +  4147112 CTGAAAATACACAAAACGTGACA----CACTGGAATGTG-CCAGACAGCA-GTTATCTGAAATCTTCTCCGTTAGGAAT----ACCGAAAGTTGTTAGGTCATAAGAC
i caePb3.Scfld02_0      I 29 I 26
e caeJap4.Scaffold18194  647525 683 -   823664 I

a score=-507.000000
s ce10.chrX             3439611 33 + 17718866 TTTCCAAAGAATTGGAACTAAAAATTGAAAGAA
s cb4.chrX              8517878  5 + 21540570 ----------------------------AAAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1859375 26 +  4147112 I
e caeJap4.Scaffold18194  647525 683 -   823664 I
e caeSp111.Scaffold630  5618728 18 + 20921866 I
e caeRem4.Crem_Contig0   569030 13 -  4500979 I

a score=329.000000
s ce10.chrX             3439644 2 + 17718866 CA
s cb4.chrX              8517883 2 + 21540570 CG
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold630  5618746 2 + 20921866 ca
i caeSp111.Scaffold630  I 18 C 0
e caePb3.Scfld02_0      1859375 26 +  4147112 I
e caeJap4.Scaffold18194  647525 683 -   823664 I
e caeRem4.Crem_Contig0   569030 13 -  4500979 I

a score=1012.000000
s ce10.chrX             3439646 5 + 17718866 AAGAA
s cb4.chrX              8517892 5 + 21540570 GCGGG
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold630  5618748 5 + 20921866 AAGGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1859401 5 +  4147112 gAGGG
i caePb3.Scfld02_0      I 26 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I
e caeRem4.Crem_Contig0   569030 13 -  4500979 I

a score=15005.000000
s ce10.chrX             3439651 59 + 17718866 TGGGTGGCATCCAAAAAAGACGAATGGGTTCGGG-GGGC----------TCGTTTAGATATTTGCCTGGT
s cb4.chrX              8517897 57 + 21540570 TGGGTGGTGTCAAA--AAGATAAATGGGTTTGGTCTGGGATTGTTCGCACCATgt-----------ctct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   569043 48 -  4500979 TGGGTGGTGTCAAAG-AAGATAAATGGGTTTGGTTTGGT----------CCGTTT-----------TGgc
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold630  5618753 49 + 20921866 TGGGTGGTgtcaaaa-aagataaatgagtttggtttggt----------tcgttt----------ggttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1859406 52 +  4147112 TGGGTGGTGTCAAAAGAAGATAAATGAGTTTGGttcggt----------tagttttg--------gtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  647525 683 -   823664 I

a score=74430.000000
s ce10.chrX             3439710 363 + 17718866  
s cb4.chrX              8517954 407 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   569091 359 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5618802 356 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1859458 361 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  648208 409 -   823664  
i caeJap4.Scaffold18194 I 683 I 47439

a score=-11222.000000
s ce10.chrX             3440073  97 + 17718866 --CCAGTGGATA----CCAGAAAGCAACTTA-----ATGTAGCTGTTGAGTGGGAGACTGGTGTA---------------ATGGAAA------------------ATATA---ATGAGGGATATGAAACACA--TAATAGTAATTA-----
s cb4.chrX              8518361 130 + 21540570 CACCTGT-GATCCTCTCTGGAAAGCAactta-----a----------aaacgaa-----aatgtaCACGTATCCAAGAATACAACAAAAACTGACACTGTTATGAAGATGGgcatgaagaaaaagaaatacatTAAAAACTATACCAATGA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   569450 119 -  4500979 --CTAGT-GATC----TCGAAAAGCAACTTA-----A----------AAACgaaatgagaatgaaaacGTGT---GGAAAATAATAG-----GGGGCTTTTTAGGAG-TTTGCACGTATGCTGTGGATAACAATTGACAGAAAACTAAT-A
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5619158  98 + 20921866 --CCAGT-GATC----CC-GAAATCAacttaaaatca----------aaatgaaaaaaaagtgga---------------acaAGAA-----------TTCATGAACCTATTTacg-aaggagagaaaaaca------ggaagaaaaat--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1859819  98 +  4147112 --CTAGT-GATT----CCGGAAAGCAACtta-----a----------aaatgaggaaaaaatgaatg-------------gaaagaa-----------gTGTTGAATGTATGCACGTATGTTGAATCAAACA------AGATAACAATTG-
i caePb3.Scfld02_0      C 0 I 114
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=-11647.000000
s ce10.chrX             3440170 77 + 17718866 TTATCATTGAT---TCAGGAAGTATGTACGTAGTTGAGTTGGCTAGGCGAAACAAAAACAATGAAAGTGGAAAATTCGAA---------------------
s cb4.chrX              8518493 74 + 21540570 TGTTTATTGTAATTTTAGAACACAaat---------------gtaattcaaaaaaaatta-------t---aattgcAAATATGCC--AACTAACTTTCAA
i cb4.chrX              I 2 I 3
s caeRem4.Crem_Contig0   569571 79 -  4500979 TGAAAAGTgga---tgaagaggaagatg-------------aggaagtgaaaagaaacaa---agagT---AGATAAGAATGTTCTCGAGCTAGCTTCAAG
i caeRem4.Crem_Contig0  I 2 I 27
s caeSp111.Scaffold630  5619256 71 + 20921866 ------ataga---tgAATAGATAAGTGC----TCTAATTACTTGAATTAAACAAGATTACTTGAATT---AAACaagaaa-------agcgaa-------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1859917 114 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=-12460.000000
s ce10.chrX             3440247 123 + 17718866 ---AAAAAA---------------TTGTCTATCAAAACACTTTTGGTTTCTTTTTTTTTTTCAAGTACGCT-CTTTAATTGCTCTTTTTCCGTT----------TTTGTCGCTTCAAAAATAGCTAGATAA----AGAATG--TCCTGGGGGAGTTGG---------
s cb4.chrX              8518570  74 + 21540570 ---AAATAG------------TTATTTTCTGTCATAAT-----------------------------------------------------------------Gcgtctattttcaaaaataggaaaaaaa----ataaggaagtCCGAAGAAATTCC---------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   569677 113 -  4500979 ---AGACAA------------TT-CTCTCAATCACAacacttttga---------atttctcaagTATGATGCTTTAATGGCTCTTCGCTCGTT-------CAGCTTCTAGTTTCAAGAataacagaaaac----agaaag---------gCAATTTT---------
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold630  5619327 129 + 20921866 --aaaataCTCTT--------GT-TTCTCAATCAAAATACATTCAA---------ATTGCACAATTATGATGTTTTAACATC--CTTGTTCGTC-------ATGCTTTCAAActtaaaaatagaagaataaCCATAAAAAA---------GCTCCTCGGGGAGAAGA
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_0      1860031 139 +  4147112 aaaaaagtgtctTCCCAGACATT-TTTCTAATCGAAACAC-TTTGA---------ATGCTTCAAGTATGACGCTTTAATAGCT-CTTCCGCGTCGGAGCtagtatttttcattttcaaaattggagaaaca----aaaaaa---------gatccattgggaaa---
i caePb3.Scfld02_0      I 114 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=-2627.000000
s ce10.chrX             3440370 15 + 17718866 TGTGCAAAGCGAGAC----
s cb4.chrX              8518644 15 + 21540570 CTAGGGAAGTGAGCC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   569790 13 -  4500979 CTTGCG--GGGAGCC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1860170 10 +  4147112 ---------aaaacttcct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619456  8 + 20921866 I

a score=81405.000000
s ce10.chrX             3440385 248 + 17718866 ---GGATAATTGGGAGAAAA-----------ATAGTGTCGAAAAGC-----GTATTGCATATTCTTTCAAATGTTGCATGTCTG--------CACTATTTATCTTCTCGC---ACTCACTAATTGCTGGAGTCT------------------CT--TCAGGCACAAAAACGAATCGAATTGATG--------------------GGCTACTCTA--TTGCAGCGACAGGCGG--CTTCAGG------AAATGACGAACTCTGATTTGTTAGGACGTGATAAAAC----GCGTGTGATTTG-TGCCGGCAGCCAA-------------------------------AACGAAGTGTGAGAAAATA
s cb4.chrX              8518659 237 + 21540570 AAA--ATAATTGGAAGAGCATAAGAA-------------------------GTGttgcataattttt--tttttcgtgcgTGTGCTGGTGTACACTATTCATCTTCTCACTCTTTTCACTAATTGGTCGTGTCT------------------CTGCTCAGACAAGA-----AATTGAATTGATGGGAGGAGAGAGTCGCCGAGAGCC--CTCCT--------------------CTGGGTG------------CGAACTCTGATTTCTTGGGAGGCGATAAAACGCCCGCGTGTGATTagatgatg---------------------------------------aacattttgtgagaaaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   569803 287 -  4500979 AGAGgataattgaaagaaaa-atgaatggcGGTGGTGCCAGTGCACCTC--GAGTTGCATAATTTTT--CGTGTTGCATGTCTG--------CACAATTCATCTTCTCGC---TTTCACTAATTGCTAGAGTCT------------------CT--TCGGGcaaga-----aattgaattgatg--------------------GCC--CCCCTCTTTGCA---ACAGGCGGGCCTGGATGAG----GAATGACGAACTCTGATTCGTTAAGATGTGATAAAACA---GCGTGTGATTGGATGATGGTGGCCGTtgagttcttttttctgcac----gaaaaaatgacgaattggGAGAAAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5619464 280 + 20921866 ---GGATAATTGGAAGAAAC------------TGATGTGGAAGCACCTCGTGTGTTGCATAATTTCT--AGTGTTGCATGTCTG--------CACTATTCATCTTCTCGC---TTCCACTAATTGCTTGAGTCTTTCACTCTCTTGCTCAGCCT--TCTgacaaga-----aattgaattgatg--------------------GCC--CTCCA--CTGCA---ACAGGCGG--CT-----------GAGTGACGAACTCTGATTTGTTAGGCAGTGATAAACCG---GCGTGTGATTGGATGATGGTGGTCGTGAAGcgtttttttctgc------agaaaaatgacgaattgagagaaaata
i caeSp111.Scaffold630  I 8 I 266
s caePb3.Scfld02_0      1860180 279 +  4147112 ---ggataattggaagaaaa------------tgatgtgGAAGCACCTCGTGTGTTGCATAATTTCC--AGTGTAGCATGCTTG--------CACTATTCATCTTCTCGC---TTCCGCTAATTGCTTGAGTCT------------------CC--TCTGacaaga-----aattgaattgatg--------------------GCC--CTCCA--ATGCA---ACTGGCGT--TTTgggggggCGAGAAGGACGAACTCTGATTCGTTAGGACGTGATAAAACA---GCGTGTGATTGGATGATGGTGGTCGTGAAGGCtttttttCCGtgcagtgaaaaaaatgacgaattgagagaaaatt
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=-11418.000000
s ce10.chrX             3440633 175 + 17718866 CTTGGCCATCGG-AACAACGTCCAATATTCATAAA-AGAAACTACACTAGAAACATTTTTCCCGCCATATTAGTTGTAAGCAATTCATT-------TTCATGATTA-ATGTATAAAAAAC----TAGAGTAACCAACGTC---AAAGTATGTTGAATATTCGATGTAAAAA--------------------TTAGTTTCCTTCTTCAAAATT
s cb4.chrX              8518896 121 + 21540570 --------------------------atgtgtgaa-aaa---cGAACTATAAACATTT--CTGAGGACATCG------------TCATCGAAGGTGGTGATGAATG--GGCGCA-GGAAC------------------TG---aagaaacatcatttttcatttctga-----------------------atTGATGgcatttttatgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   570090 182 -  4500979 GACGACATTTTG-AACCAGGTCCCAGATGTGTGAA-AGAAACCGAACTATAAACGTTT---TGCCTATATCA------------TCATT--------TGGTGAATG-AGATGCATGGAGCTAATTGAGTTGACTGATGTG---ATGAAAC-TCAAGTATCATTTGTTAAAACACATCAGtgtataaaatttatttttagctGTTTCATAACT
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      1860466 140 +  4147112 aatgacatttttcaacaagGTCCCAGATGTGAGAACAAAAACCTAACTATAAACATTT---GGGCTACTTCA----------ACTTATC--------ATGTGAACAAATTTACATAGAGTTCACTGA-----------TGAACATGAAACACTAAAT----------------------------------GTTTTTA----CTTCAAAA--
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619744 266 + 20921866 I

a score=-745.000000
s ce10.chrX             3440808 49 + 17718866 ATAATTATAAACTTGAATTTTATCTGAAATATACGGTTTCATTTCGTTT
s cb4.chrX              8519017 40 + 21540570 ataatTAATAAC-----AGTTATATGGA----ataagttcgaaaaattc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1860606 36 +  4147112 -----CATTAAC-------CTTCTTGGA-TCTATTATTTCAATGCATTT
i caePb3.Scfld02_0      C 0 I 138
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619744 266 + 20921866 I
e caeRem4.Crem_Contig0   570272  2 -  4500979 I

a score=-664.000000
s ce10.chrX             3440857 159 + 17718866 ATTTCTAGATATTGGTGCCCGTATTTTTTAAAGAAATGCCAATATTATGAATCAATGTACTGCAAGTG-----CGTAATTCGTGTAATATGCACTCAATACACGTAGACAAAAAAAAACATTTGAGACCACACATAGCCCATTACGAACCTCAATTCATGTCGG
s cb4.chrX              8519057 134 + 21540570 tgttcTGGGCCGGGATTTCACGAATTTTCAAGGAGTTGGAAATTTCACGGACCacttta---aaattgtttttcaaaatctgtgaaatcagta--aaattcac-------aaaatgatTGTTTTCAGCCACAAAAAACAC------AACCT------------G
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1860642 138 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619744 266 + 20921866 I
e caeRem4.Crem_Contig0   570272   2 -  4500979 I

a score=-24373.000000
s ce10.chrX             3441016 477 + 17718866  
s cb4.chrX              8519191 269 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1860780 302 +  4147112  
i caePb3.Scfld02_0      I 138 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619744 266 + 20921866 I
e caeRem4.Crem_Contig0   570272   2 -  4500979 I

a score=-12549.000000
s ce10.chrX             3441493 113 + 17718866 TTCAAATTACTTTTTTTTTCTTTTT-TTTCG---AAATTCAGTATTCAATTTTCCCATTGAGAATAAATCAAATTTACATTCAAACTTTTTGAAACTATTATGAATTACCCGCAAAC----
s cb4.chrX              8519460  84 + 21540570 TTTAATTCATTTAACCGTTCGTTTCTTCCCA---ATAATCAATGTTCA--------TAAAACAATACCT-----TTCTTTTCA------TTGAG---ATTTGAA------------CGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   570274 106 -  4500979 TTCAAATTACCCTTCTGTTCATTTa-tccca---aaaataaaaaataaatt----ctatACTAATAACCGAAGATTTCACACA------TTGAAAC-ATTCGGAGAAAATtccattcaatc
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1861082  61 +  4147112 -----ATCACTTTGCCG---ATTT--TCCCATTCGAACtgaatcatca--------aaaaccgCCACGTAATGttctca------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5619744 266 + 20921866 I

a score=58752.000000
s ce10.chrX             3441606 752 + 17718866  
s cb4.chrX              8519544 633 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   570380 710 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5620010 679 + 20921866  
i caeSp111.Scaffold630  I 266 C 0
s caePb3.Scfld02_0      1861143 665 +  4147112  
i caePb3.Scfld02_0      C 0 I 2149
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=273.000000
s ce10.chrX             3442358 1 + 17718866 A
s caeRem4.Crem_Contig0   571090 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 1832
s caeSp111.Scaffold630  5620689 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1861808 2149 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e cb4.chrX              8520177 0 + 21540570 C

a score=699.000000
s ce10.chrX             3442359 15 + 17718866 ACTTGTATTTTTGAT--
s cb4.chrX              8520177 17 + 21540570 ACTTGCATTTGTTCTAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5620690 15 + 20921866 atttttatttacgAT--
i caeSp111.Scaffold630  C 0 I 3567
e caePb3.Scfld02_0      1861808 2149 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeRem4.Crem_Contig0   571091 1832 -  4500979 I

a score=875.000000
s ce10.chrX             3442374 40 + 17718866 AAAGTGTTGGTATATTTCTGAATTGATTCTTATTGTATAA
s cb4.chrX              8520194 38 + 21540570 GAATTatcag--agtttctgaaataatCTTTGTTTAATAA
i cb4.chrX              C 0 I 9380
e caePb3.Scfld02_0      1861808 2149 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeSp111.Scaffold630  5620705 3567 + 20921866 I
e caeRem4.Crem_Contig0   571091 1832 -  4500979 I

a score=0.000000
s ce10.chrX             3442414 3707 + 17718866  
e caePb3.Scfld02_0      1861808 2149 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e cb4.chrX              8520232 9380 + 21540570 I
e caeSp111.Scaffold630  5620705 3567 + 20921866 I
e caeRem4.Crem_Contig0   571091 1832 -  4500979 I

a score=91.000000
s ce10.chrX             3446121 1 + 17718866 T
s caeRem4.Crem_Contig0   572923 1 -  4500979 t
i caeRem4.Crem_Contig0  I 1832 C 0
e caePb3.Scfld02_0      1861808 2149 +  4147112 I
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e cb4.chrX              8520232 9380 + 21540570 I
e caeSp111.Scaffold630  5620705 3567 + 20921866 I

a score=123.000000
s ce10.chrX             3446122 2 + 17718866 TC
s caeRem4.Crem_Contig0   572924 2 -  4500979 tg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1863957 2 +  4147112 TC
i caePb3.Scfld02_0      I 2149 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e cb4.chrX              8520232 9380 + 21540570 I
e caeSp111.Scaffold630  5620705 3567 + 20921866 I

a score=4821.000000
s ce10.chrX             3446124 30 + 17718866 TACGTGATATTATTCGC-TTTTGCCCGTTTT
s caeRem4.Crem_Contig0   572926 31 -  4500979 tacgtgagaaaattgagattttgcaAGATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5624272 30 + 20921866 TACGTGacaaaattcat-ttccataGAATTG
i caeSp111.Scaffold630  I 3567 C 0
s caePb3.Scfld02_0      1863959 30 +  4147112 TACGTgagaaacttctt-tttttccggattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e cb4.chrX              8520232 9380 + 21540570 I

a score=7246.000000
s ce10.chrX             3446154 75 + 17718866 TTCCTTGTATTTGGATCTGAGTCACTATACGTCAT--AGGA---TTTTCCTAAAACAACA-AATCCTTTTCTTTTCAATCA---------
s cb4.chrX              8529612 71 + 21540570 TTCCTTGTAAGTGCCGGTGAATCATAAGACGTCAC--AAGT---TT----CCAAacaaaa-tgcgatttttgtttcttgtt---------
i cb4.chrX              I 9380 I 2
s caeRem4.Crem_Contig0   572957 74 -  4500979 CTTCctgtatctgaaaatgattcattCAACGTCAC--AAAcgaatt----caaaacaaaa-gtcGGTATTCCTTCCTCCTC---------
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold630  5624302 80 + 20921866 TTCCT--TATTCAGATATGATTCATAGGACGTCATCtaagt---tt----caaaacaaaa-gcAGCTTTTTGTTCCAccttttttgatca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1863989 83 +  4147112 cttCTACCATTCAATCATGATTCATGCGGCGTTTTCAAGGT---TT----TATAACAAAACAAAGACTTttgttcccttttttttcatca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=-1316.000000
s ce10.chrX             3446229 24 + 17718866 TGGGGGTGAAAATTC----ATATTTTTC--
s cb4.chrX              8529685 30 + 21540570 ttgattaaaaaatttcaacgcacggtttgc
i cb4.chrX              I 2 I 4
s caeSp111.Scaffold630  5624382 19 + 20921866 -------aaaagtttcg--attTGCTTT--
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      1864072 20 +  4147112 -------aaaaattctga-atgcGATTC--
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194  648617 47439 -   823664 I
e caeRem4.Crem_Contig0   573031 36 -  4500979 I

a score=3775.000000
s ce10.chrX             3446253 46 + 17718866 GAAAAC-ATAACTTGATATAAAA-GTGTTGC-GCGTCGACTTGAATT---------TA
s cb4.chrX              8529719 56 + 21540570 aaaaac-aaacctagataTAAAT-ACACAGACTTGGGTTCTGAGGAAGCATCCAAGCA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   573067 55 -  4500979 gaaaac-aaaactcaGTATAAAT-ATATCGg-gagagttttgaaaaagtatccAAGCA
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  5624408 55 + 20921866 GAAAAC-ATAGCCCGGTATAAAATCCTGAGC-TCCGTCTTTGGCTAC-CATCCCAACA
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0      1864099 56 +  4147112 gaaaacaaaaaataggtataaaa-ataaaGG-GCGGTCAACGGAAAAGTATCCAAGCA
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194  648617 47439 -   823664 I

a score=35770.000000
s ce10.chrX             3446299  88 + 17718866 TCAAACCATGAAGCTTCTCATCGTCCTCCTCGCTCTCATCGCTGTTGTTGTAGCCTCCAGCTACGGAGCTCAA---------------AACGACTACCCAACA-
s cb4.chrX              8529775  85 + 21540570 TTGAAATATGAAGTTCCTCCTTGTACTCTGTGCCCTAGTAGCCTTCGCTTTTGCA---AACTACGGCGTCAGC---------------AATGACAACTACCAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   573122  85 -  4500979 TCGAACCATGAAGCTCATCCTCGTCCTCTGCGCTCTCGTCGCCTTAGCTGTTGCC---AATTACGGAGTGAAC---------------AACGGAGGATACAAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5624463 103 + 20921866 TCAAATCATGAAGTTCCTTCTTGTTCTCTGCGCTGTTATTGCTGTCGCTGTGGCCTCTGCCTACGGAGGAAATGACTATCAACAACCGAATATCGGATACGTT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1864155  88 +  4147112 TCAAATCATGAAGCTCCTCCTCGTCCTCTGCGCTGTCATCGCTGCTGTTGCTGCCTCCGGCTATGGTGGACAC---------------AATAATGGATACAAC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696056  86 -   823664 TCTAACAATGAAGCTTATTCTTGTCCTCTGTGCTCTTATTGCAGTGGTTGCTGCG---AATTCGTACCGTAAC---------------AACAACAACTACAACA
i caeJap4.Scaffold18194 I 47439 I 40

a score=-7502.000000
s ce10.chrX             3446387 26 + 17718866 GATGTTGGATATGGAAACCC--TG-GCTA
s cb4.chrX              8529860 29 + 21540570 GTGGGAGGCTATGGACATCATGATAACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   573207 26 -  4500979 CAAGTCGCCTACGGAAACCA--AT-ACGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5624566 11 + 20921866 G---------------ATCA--AC-CATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1864243 11 +  4147112 A---------------ACCA--CG-GATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  696142 40 -   823664 I

a score=6780.000000
s ce10.chrX             3446413 6 + 17718866 GTAAGT
s cb4.chrX              8529889 6 + 21540570 GTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   573233 6 -  4500979 GTAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5624577 6 + 20921866 GTAAGA
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      1864254 6 +  4147112 GTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696182 6 -   823664 GTAagt
i caeJap4.Scaffold18194 I 40 C 0

a score=-12966.000000
s ce10.chrX             3446419 43 + 17718866 TATATAGCGGCTTCCATGAAATATTTTATAGTTA---CAATTTGTT--
s cb4.chrX              8529895 36 + 21540570 -------TCAATTCGATTGGTTACTTTTTGAATA---CGATATCTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   573239 36 -  4500979 -------TTTGCTC---TGCTCAAGATACAACTATAGCTAATTCAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1864260 39 +  4147112 -----TATTGTTTCGAATATATACATTTACACCAACTCAAATTT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696188 36 -   823664 --taaaatttgttt-------taccagaaaaata---atagttttttG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5624583 36 + 20921866 I

a score=86241.000000
s ce10.chrX             3446462 338 + 17718866 TAGTGACAACGGAAATCCCTTCTACAA---GCCACGCAAGCATCACAGAAGACGCCACGGACGTCGtggaagacacggaagacatggaagacat------ggaagaAGACATAGTGATTCA---TCCGATTCTAGCTCTGAATCAAGATCCAGATCATCGTCGGGATCCAGTTCATCCGAGTCACGCAGCTACGAG------AGA---GATTACTACTACGTC------CCAAGATGGCCAACCG--------------------------------CCCCA---AGTTACGGAAACACCGGTAACGATGTTCCAGCTGGAACAGCTTACGGATCACCAGCCAACGAT------------------CCACCAGCA------------------------------CCTGCTCCATACGG---TACCAACACATTTGGC-GGAAAGTA-----AATAA
s cb4.chrX              8529931 304 + 21540570 -TATAGTATCGACAGTCCATTCTACAAAGAGCC------GCATCACAAA------CAC---CGCCGTggaagacacggaagacacggaagacGT---CATCGTGGAGGCCGTag---ttcttcgtcttcttcaaGTTCAAGCTCCGAATCTCGCTCT------------------TATGAGTCTCGCTCGTACGAG------AGA---GATTACTATCCATAC--------------CCACACCA------------------------------TGTGCCA---AGCTATGGAAATGTTGCTCATGAGGCTCCAGCTGCTACAGCTTACGGATCTCCATCCAACGAT------------------GTTCCTGCT------------------------------CAAGCTCCATACGG---TGTGAACACATTTGGA-AAGAAGTA-----AAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   573275 325 -  4500979 -TTCAGACTCGAAAGCCCGTTCTACAAACCACC------ACACTACAAA------CGT---AGACATGGAAGACACGGAAGACACGGAAAACGT---CATCACAGAGACTCCAGCGATTCTGATTCCGACTCAAGCTCTGGCTCTCATTCTAGCTCG------------------TCTGAATCCCACAGCTACGAACATGATGGA---CACTACTATCCACACCCAATGCCA--ATGCCATACCC------------------------------AGTCCCA---AGCTACGGAAATATGGCTAACGAGCCCCCAGCAGCTAACACATATGGTTCTCCATCCAACGAC------------------Gtcccagct------------------------------ccagctccataCGG---TGCCAATACTTTCGGA-CGCAAGTA-----AATAA
i caeRem4.Crem_Contig0  C 0 I 114
s caeSp111.Scaffold630  5624619 319 + 20921866 CAGTGACAGCTACAATCCATTCTACAA---ACC------acacagaaga------catggaagacatggaagacacggaagacacggaagacacggaaAACATCATCGTCATAGTGACtct---tctgattctagctct---------tcttcttcttcatc---------ttcttccgaaTCGCGCAGCCATGAA------CGATTTGATTATATTCCTTAC------CAA--ATGCCATATCA------------------------------AGCGCCA---AACTATGGAAACATTGCTAACGAAGCTCCAGCAGCCACAGCTTACGGTGCTCCATCCAACGAT------------------GTTCCAGCT------------------------------CCAGCTCCTTATGG---TGCCAAcacatttgga-agaaaatgagtgaaa---
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      1864299 378 +  4147112 CAGCGATGACTACAACCCATTCTACAA---GCC------GTACCATaga------cacggaagacatggaaagcacggaagacacggaagacaT---CATCGTCACCATCACTCAGACTCTGACTCTGATTCCAGCTCTGGCTCTCACTCTCATTCTTCATC---------ATCCTCTGGATCCCACAGCTATGAG------AGAGATGATTACTATCATCAC------CCA--ATGCCATACCAG---------------------GCTC---CAGCCCCA---ACCTACGGAAACGTTGCCAATGATGCTCCAGCTGCTACTGCCTATGGTGCTCCAATCAACAACCCACCAGCCAACAAcccagctccagctccatGGGGAATGAACAACAACCCACCAGCACCAGCTCCATGGGG---TGTTAACACATTCGGACAGTAAATG-----AA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696224 321 -   823664 TAGAGCCTACGCGGATGCTTTCTACAA---CCC------ACACCACAGAAGACACCATGGACGTCGCGGGCGCCATGGAAGACACGGACGTCAC---CATCAT---------------------TCGGATTC---CTCAGACTCCGACTCTCGCTCC---------------------------GGAAGCTATGAG------GATGACTATTACTACTATTAT------CAA--CCTTCTTACAATCGTCCAGTTTACGGAGGATACGCTCAGGCTGCTCCAGTCAAATACGGAGCTGCTTCCAACGATGCTCCAGCTTCGTCCGCTTACGGATCCACCGCCAATGAT------------------AGCCCAGCT---------------------------------GCTTCATACGGGACTGCCAACACTTTCGGA-GGAAAATA-----AAT--
i caeJap4.Scaffold18194 C 0 C 0

a score=-6153.000000
s ce10.chrX             3446800 49 + 17718866 TTGCGATGTTT---TTATTAAGA-------TATTTTGGATGTGGTAATGAATGGTATCT----
s cb4.chrX              8530235 44 + 21540570 -----AT-TTTAAGTGATAATTA-------ATGTTTTTATGG--TAAtaaacacgtttt----
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold630  5624938 45 + 20921866 -----atGTTCAAGCGTTTATTA-------TAA--TTGAAGATTTAATGAATGATTATT----
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1864677 47 +  4147112 -----Atgctttatttttgaatg-------tcattTTGGGGGagtaataaatattttct----
i caePb3.Scfld02_0      C 0 I 89
s caeJap4.Scaffold18194  696545 59 -   823664 ----TGTATTTTGATTAAGaataaatgtattattttgAATGATTTTATAAATAAATGGTTTGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=-860.000000
s ce10.chrX             3446849 5 + 17718866 -AATTG
s cb4.chrX              8530286 4 + 21540570 -AATG-
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold630  5624984 5 + 20921866 -AATGA
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold18194  696604 5 -   823664 AACTg-
i caeJap4.Scaffold18194 C 0 I 5
e caePb3.Scfld02_0      1864724 89 +  4147112 I
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=182.000000
s ce10.chrX             3446854 2 + 17718866 AA
s caeSp111.Scaffold630  5624989 2 + 20921866 AA
i caeSp111.Scaffold630  C 0 I 129
e caePb3.Scfld02_0      1864724 89 +  4147112 I
e caeJap4.Scaffold18194  696609 5 -   823664 I
e cb4.chrX              8530290 0 + 21540570 C
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=966.000000
s ce10.chrX             3446856 22 + 17718866 CTTCCGTTTTC---TTTTGAAGAAT
s cb4.chrX              8530290 25 + 21540570 TTTCGATTTTCGCGTTTCGAAGAAT
i cb4.chrX              C 0 I 1146
e caePb3.Scfld02_0      1864724 89 +  4147112 I
e caeJap4.Scaffold18194  696609  5 -   823664 I
e caeSp111.Scaffold630  5624991 129 + 20921866 I
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=0.000000
s ce10.chrX             3446878 1874 + 17718866  
e caePb3.Scfld02_0      1864724   89 +  4147112 I
e caeJap4.Scaffold18194  696609    5 -   823664 I
e cb4.chrX              8530315 1146 + 21540570 I
e caeSp111.Scaffold630  5624991  129 + 20921866 I
e caeRem4.Crem_Contig0   573600  114 -  4500979 I

a score=452.000000
s ce10.chrX             3448752 37 + 17718866 AAATATTTAAAAATTGTAATTATCGAATCAAAGTTTT
s caeJap4.Scaffold18194  696614 32 -   823664 aaataaattaaaatt-taagtTTTGATTTA----TTT
i caeJap4.Scaffold18194 I 5 C 0
e caePb3.Scfld02_0      1864724 89 +  4147112 I
e cb4.chrX              8530315 1146 + 21540570 I
e caeSp111.Scaffold630  5624991 129 + 20921866 I
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=-566.000000
s ce10.chrX             3448789 10 + 17718866 --TTCACATGGC
s caeSp111.Scaffold630  5625120 10 + 20921866 --TTCACTTTGG
i caeSp111.Scaffold630  I 129 C 0
s caeJap4.Scaffold18194  696646 10 -   823664 GTCTTATTTC--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1864724 89 +  4147112 I
e cb4.chrX              8530315 1146 + 21540570 I
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=2366.000000
s ce10.chrX             3448799 11 + 17718866 TTTCCCTCCAG
s caeSp111.Scaffold630  5625130 11 + 20921866 CTTCCCACCGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1864813 11 +  4147112 TTTCCCTGTTG
i caePb3.Scfld02_0      I 89 C 0
s caeJap4.Scaffold18194  696656 11 -   823664 TTTCGCACTGG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8530315 1146 + 21540570 I
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=-1590.000000
s ce10.chrX             3448810 7 + 17718866 -----GAGCATG
s cb4.chrX              8531461 7 + 21540570 -----GAGAACT
i cb4.chrX              I 1146 C 0
s caeSp111.Scaffold630  5625141 7 + 20921866 -----GAGCGAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1864824 7 +  4147112 -----AAACACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696667 8 -   823664 AATCGAAG----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   573600 114 -  4500979 I

a score=526897.000000
s ce10.chrX             3448817 1102 + 17718866  
s cb4.chrX              8531468 1052 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   573714 1064 -  4500979  
i caeRem4.Crem_Contig0  I 114 C 0
s caeSp111.Scaffold630  5625148 1053 + 20921866  
i caeSp111.Scaffold630  C 0 I 38
s caePb3.Scfld02_0      1864831 1060 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  696675 1078 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=546.000000
s ce10.chrX             3449919 1 + 17718866 T
s caeRem4.Crem_Contig0   574778 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 39
s caePb3.Scfld02_0      1865891 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  697753 1 -   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8532520 4 + 21540570 I
e caeSp111.Scaffold630  5626201 38 + 20921866 I

a score=127.000000
s ce10.chrX             3449920 6 + 17718866 TAATtt
s caePb3.Scfld02_0      1865892 6 +  4147112 tcaatt
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold18194  697754 0 -   823664 C
e cb4.chrX              8532520 4 + 21540570 I
e caeSp111.Scaffold630  5626201 38 + 20921866 I
e caeRem4.Crem_Contig0   574779 39 -  4500979 I

a score=0.000000
s ce10.chrX             3449926 452 + 17718866 gaagttggagtaccgtcagtgggtacattgctttacaacaccacaatagccagaaaaagtagtgaaagtttttttttatctaaaaatttttaatgatttttttttaagttgaaaaactttcagcttgcgtaaaattaaatttgaacctccctccataagtatctgtttgatggaTTTTTTTAACCCGACtttacatgttttcagtgaagctttactgcaaatttgaagaaaacgtcaagataaatgtttttgatcataaagcaaatgtacaagcataaatctgtgaaattcaattatttcagatttaagctctttaaaaatgggtttagagagcaaactgagactttttcaattttcaaaaaattatacacatttcagaaaaatttttcaataattgtttcaataatattttatttgattgctgtggtgttctaaaaaaattttgccactgC
e caePb3.Scfld02_0      1865898  41 +  4147112 I
e caeJap4.Scaffold18194  697754   0 -   823664 C
e cb4.chrX              8532520   4 + 21540570 I
e caeSp111.Scaffold630  5626201  38 + 20921866 I
e caeRem4.Crem_Contig0   574779  39 -  4500979 I

a score=191.000000
s ce10.chrX             3450378 2 + 17718866 TC
s caeJap4.Scaffold18194  697754 2 -   823664 tc
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1865898 41 +  4147112 I
e cb4.chrX              8532520 4 + 21540570 I
e caeSp111.Scaffold630  5626201 38 + 20921866 I
e caeRem4.Crem_Contig0   574779 39 -  4500979 I

a score=32.000000
s ce10.chrX             3450380 20 + 17718866 AATCTTTAAATTACAAAAAA----
s cb4.chrX              8532524 20 + 21540570 aatctagaaaatgcgaaaaa----
i cb4.chrX              I 4 I 5
s caeJap4.Scaffold18194  697756 24 -   823664 aatttttgtcattttagaagcgaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1865898 41 +  4147112 I
e caeSp111.Scaffold630  5626201 38 + 20921866 I
e caeRem4.Crem_Contig0   574779 39 -  4500979 I

a score=365.000000
s ce10.chrX             3450400 17 + 17718866 -AAATCAAAGATTAACAA
s cb4.chrX              8532549 12 + 21540570 -aaataggaaa-----aa
i cb4.chrX              I 5 I 1
s caePb3.Scfld02_0      1865939 12 +  4147112 -aaataaaata-----ta
i caePb3.Scfld02_0      I 41 I 1
s caeJap4.Scaffold18194  697780 13 -   823664 aaattaaaatt-----ta
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5626201 38 + 20921866 I
e caeRem4.Crem_Contig0   574779 39 -  4500979 I

a score=321740.000000
s ce10.chrX             3450417 513 + 17718866  
s cb4.chrX              8532562 519 + 21540570  
i cb4.chrX              I 1 I 10
s caeRem4.Crem_Contig0   574818 511 -  4500979  
i caeRem4.Crem_Contig0  I 39 I 6
s caeSp111.Scaffold630  5626239 500 + 20921866  
i caeSp111.Scaffold630  I 38 C 0
s caePb3.Scfld02_0      1865952 504 +  4147112  
i caePb3.Scfld02_0      I 1 I 19
s caeJap4.Scaffold18194  697793 547 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9788.000000
s ce10.chrX             3450930 27 + 17718866 --------TATTAGTTTGGCTGTTCACTATATTAT-
s cb4.chrX              8533091 12 + 21540570 --------------tttt---------taaaaaat-
i cb4.chrX              I 10 I 11
s caeRem4.Crem_Contig0   575335 21 -  4500979 --------------TGTTAGGGACGGGTAGGATAT-
i caeRem4.Crem_Contig0  I 6 I 10
s caeSp111.Scaffold630  5626739 17 + 20921866 ------------------GTTTAATTGAAAGATAT-
i caeSp111.Scaffold630  C 0 I 10
s caeJap4.Scaffold18194  698340 36 -   823664 CTTTACTTTAGGAATTTTTATGTGCATACAAATACT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1866456 19 +  4147112 I

a score=151251.000000
s ce10.chrX             3450957 307 + 17718866 TACGTTATAAGCACTGCAACAATAAACAATACATTGAGAAAATAAGAAGAAACCAATAAAGCGGCTGAAAA-AAT----AATATGACTAG--TCTCGTTTAT---TCGGAAAA-----------AAACCTACCGATCAGAATAGCATTTGTAGTTCTTAAACTCGCCGATTGAGTTTCCTTAATAGTCACAATGGCAAGAGTATCTTCTTCTGGAACGTACTCGACTGTGATAGCCATCCTG--TTTCAGAAA--AGCGTTATGTCGA------------TAAGCATGTG-------------AGGGA---------------GCTAATATGAGTGG--AAGTGAGTTTGCCTTACGATGTCGTCATAGCAACC
s cb4.chrX              8533114 318 + 21540570 tACGTTATGAGCACCGCTACAATAAAcaaaacattcagaaaatatGACGAAATCAGTAATGCAGCTGGAATTGATTTACGCTGT--------TTTAACCAAAAATTGTTCA----------GTCAGACTCACCGATTAAAATGGCATTTGTTGTTCGTAAACTTGCCGATTGCGTTTCTTTAATTGTGACAATTGCCAGAGTATCTTCTTCGGGAACATATTCGACTGTAATAGTCATTTC-------AACGCAC-ACGTGCGGCAGT------------TAA-CTGGTGGTGGCGGGGGAATAGAGC---------------TCCAATAAGAGTGGAAGGGGGAGTTTGTC--ACGATGTTGTTATagaaacg
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   575366 319 -  4500979 CACGTTATCAACACGGcaacaataaataaaacattcaaaaagtatGATGAAATCAGTAATGCCGCTGGAAGAAAT----GAAGT--------Tcaaagtcaa---ttttcaaa------atgtaaaacTCACCGATTAGTATAGCATTTGTTGTTCGTAAACTTGCCGATTGTGTTTCTCTAATAGTAACAATTGCAAGAGTATCTTCTTCAGGAACATATTCAACAGTTACGGCCATGTCT--TTCAAAAGCCCAACGTGTAGTCGA------------TAAGCATGTGGTGAGAATGGAA-AGAGG---------------GCTAATAAGAGTGG--GAGTTAGTATGCC--GCGAGGTAGTCATGACAACC
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5626766 315 + 20921866 CACGTTATAAAAACAGCAACAACAAAGAGAACGTTCAGAAAATACGACGATATCAGTAACGCAGCTAAAAT--AT----TCAGT--------TTCATACTAT---TCTGAACA------TATTTTAACTTACCTATCAAAATAGCATTTGTAGTTCGTAAACTTGCAGATTGAGTCTCTTTGATTGTGACAACAGCCAGAGTATCTTCTTCCGGGACAAATTCAACAATTATAGCCATATCT--TTCAAGAGGCGAACGTAAAGTCGA------------TAAGCGTGTGATGTGGACAGAA-AGAGG---------------GCTAATATGAGTGG--GAGG--CTGTCCG--AAGATGTAACTATGACAACC
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      1866475 325 +  4147112 TACGTTATTAAAACAGCCACAATGAATAAGACATTGAGGAAATATGAAGAAATGAGTAATGCAGCTGAAAT--AT----CAAATGTTTATTGTCTATTTCAC---TCTGGAAA------CGTTTGTACTCACCTATCAAAATAGCATTTGTAGTTCTCAAACTAGCCGATTGAGTTTCCTTAATAGTAACAATAGCGAGAGTATCCTCCTCAGGGACATATTCCACTGTTATCGGCATATCT--GTTGAATGACTAACGGCAAGTCGA------------TAAGCATGTGGTGTGGTGAAAG-AGACA---------------GCTAATATGTGGGG--GAGGGAGTTTCCT--GCGATGTCTCCATGACAACC
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18194  698376 356 -   823664 TACGTTATAATCACTGCAACCATAAACAACACATTGAGAAAGTAAGATGATATGAGTAATCcggctgaaaa--tt----aaaat--cca---tctacttatt---tcaaaaaaatacacCACAAAAACTAACCAATTAATATTGCATTTGTTGTTCTTAAACTAGCAGATTGTGTTTCTTTGATTGTCACAATTGCCAACGTCTCCTCCTCCGGAACGTACTCCACAGTGATAGTCATGCTCAAGTTTAACGTTTAGCATAAAACCGTGCCACAAGCCACTATGCACGTGAAAAAAGGCGAGGAGAGCAGAATAGTGGTAGTTGCTAAAATTCGAGT--GGGTGAGATGCCG--ACGATGTAGTCATGACAACC
i caeJap4.Scaffold18194 C 0 I 1173

a score=12120.000000
s ce10.chrX             3451264 101 + 17718866 AA-CGAATTAGAATATCGGCGACGGAGAAGTGTGGGTGTGTATGTGTGTGTGTGCTCACTAAAAGCAGAGCAAAAGTAGGGAG---AG----CGGTGTTGTTCT-------TCCCA
s cb4.chrX              8533432  76 + 21540570 gggagaatga----ctaggagaagcaaaaatgaagagaag---------------------agagaaaaggaggga-gaggag---ag----TGGTGCTGTTCT-------TTTCA
i cb4.chrX              C 0 I 51527
s caeRem4.Crem_Contig0   575685  82 -  4500979 GGTGGAATTAGAATCTTGACGGCGTAAAACCGAGTGGACG----------------------GAgaaagagaggag-gaggaggcaaC----TGGTGTTgttct-------tttcg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5627081  80 + 20921866 GA-CGAATTAGAATTCTGGCGGCATAACacgaag---------------------------agagaagagggagAG-ACGTAG---AG----TGGTGTTGttgtttctcaatttca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1866800  84 +  4147112 GG-AGAATTGAAATCTTGGCGGCGTAAAATGGAGTGAATG--------------------AAGAGGAGATGGAGAG-AAGGAG---AGCAACTAGTGTTGTTCT-------TTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  698732 1173 -   823664 I

a score=-249.000000
s ce10.chrX             3451365 9 + 17718866 TGTGTAATC
s caeRem4.Crem_Contig0   575767 9 -  4500979 tttttaatC
i caeRem4.Crem_Contig0  C 0 I 188
s caeSp111.Scaffold630  5627161 9 + 20921866 tctCTAATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1866884 1 +  4147112 T--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  698732 1173 -   823664 I
e cb4.chrX              8533508 51527 + 21540570 I

a score=128.000000
s ce10.chrX             3451374 5 + 17718866 TTTTT
s caeSp111.Scaffold630  5627170 5 + 20921866 CGTTT
i caeSp111.Scaffold630  C 0 I 1717
e caePb3.Scfld02_0      1866885 0 +  4147112 C
e caeJap4.Scaffold18194  698732 1173 -   823664 I
e cb4.chrX              8533508 51527 + 21540570 I
e caeRem4.Crem_Contig0   575776 188 -  4500979 I

a score=-5687.000000
s ce10.chrX             3451379 470 + 17718866 GCTTTTGCGTAGTTAGGAAAATTTTCAAATAATTTGGAAAGGTAGGCTTTTGTTTTGGTAAAAATTCTTAAATTCTGCATTTCTTTTTAGAGCTATATATTTAAAATGTTTTCAGCTAACTCGTC---ATTGAGTATAGTTTTTATTAATTTTCCATGGTGTATAATTTTATCAAATTCTTTATGAAAAATTTTTCATCGGCTGACATCATGCGGGTCTCAGTTGGACCATGATTTGTATGTGAGCTACAGCTTAAAAATATAGTTTTTCCCAATTGAATAGAGTTTACTGATACTCTTCACAATATTGTCCAAGATCTGCAGTTTTGTTTCGCTTCAAATTTCCCAGAAAATTTTATACAAAAGCAAAAGAACACTCTTCACAATTTTTTATTTTTGGCCCTGTTTTTTTTGTTTTGAATGTATCTGGAAACTTCAGGGAAAATTTTAAGAATTTCACTCAAAATTCTACAT
s caePb3.Scfld02_0      1866885 189 +  4147112 ------------------------TCGAATG------------------------------------------------------TCTAATGCAGTGAATTTAGTAAGTGTGCAGCGCACTTTTCCTGATTGATTATAGCTCATAAAAGTtgttcttgtt---tcattttac----ttc-------aacactttttatt----------------------------------tttgcttttgag-------------------------------------------------------acaacattgatcaaaat---------------------------------------------------------------------------ttttttcctctgtcatcttagtttccaaaaaattaagcAGCTTCA---------------------------ACTCTCCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  698732 1173 -   823664 I
e cb4.chrX              8533508 51527 + 21540570 I
e caeSp111.Scaffold630  5627175 1717 + 20921866 I
e caeRem4.Crem_Contig0   575776 188 -  4500979 I

a score=-821.000000
s ce10.chrX             3451849 12 + 17718866 TTTGAGAAAATT
s caeSp111.Scaffold630  5628892  3 + 20921866 ---------TTt
i caeSp111.Scaffold630  I 1717 C 0
s caePb3.Scfld02_0      1867074  3 +  4147112 ---------ACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  698732 1173 -   823664 I
e cb4.chrX              8533508 51527 + 21540570 I
e caeRem4.Crem_Contig0   575776 188 -  4500979 I

a score=-1142.000000
s ce10.chrX             3451861 15 + 17718866 ATAAAAGTTTGAGCC
s cb4.chrX              8585035 10 + 21540570 ataaaaatT-----C
i cb4.chrX              I 51527 C 0
s caeSp111.Scaffold630  5628895  6 + 20921866 gtgaaa---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1867077 10 +  4147112 ATGAAAAAG-----C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  698732 1173 -   823664 I
e caeRem4.Crem_Contig0   575776 188 -  4500979 I

a score=-6492.000000
s ce10.chrX             3451876 49 + 17718866 -AAGTATATCAAAAATAGGTTTTTATGTTTTTTTTTTCATATGATATAAT
s cb4.chrX              8585045 41 + 21540570 -Aacgttatcaaaaata--ttttgctttattttattttat------ttat
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  5628901 16 + 20921866 -attgttttgaaaaa---------------------------------at
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      1867087 16 +  4147112 -Acagttttgtaaaa---------------------------------at
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  699905 42 -   823664 AAGtattgtaaaaacaaaaaccctttttttCATATTATAA--------AT
i caeJap4.Scaffold18194 I 1173 C 0
e caeRem4.Crem_Contig0   575776 188 -  4500979 I

a score=916531.000000
s ce10.chrX             3451925 1671 + 17718866  
s cb4.chrX              8585087 1589 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   575964 1665 -  4500979  
i caeRem4.Crem_Contig0  I 188 M 751
s caeSp111.Scaffold630  5628922 1647 + 20921866  
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      1867105 1637 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  699947 1784 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1045078.000000
s ce10.chrX             3453596 1967 + 17718866  
s cb4.chrX              8586676 1876 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5630569 1940 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1868742 1968 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  701731 1980 -   823664  
i caeJap4.Scaffold18194 C 0 I 23
e caeRem4.Crem_Contig0   577629  751 -  4500979 M

a score=5889.000000
s ce10.chrX             3455563 27 + 17718866 GAAGAACAAAAC-GCGAAATCTT--GCCCG
s cb4.chrX              8588552 28 + 21540570 agagaaaaaaga--cagaaTCTTGGGCccg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5632509 28 + 20921866 ACAGAACAAAGCAGCAAAATCTT--GCCcg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1870710 27 +  4147112 aaagaacaaagaagc-AAATCTT--GCtcg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  703711 23 -   823664 I
e caeRem4.Crem_Contig0   577629 751 -  4500979 M

a score=93077.000000
s ce10.chrX             3455590 300 + 17718866 AAATTCTCATTTTTCATCTTGTTTCCAAACCACCGGACAAGTGGCTCTTTAGCAGAACATTTGGCGCGCTTTGCCGGCATTT--CAGTGAGCACCACAGCAGGAGTATGAGCCACGGAGAAAAACGCGGCAGCAGGAGCACAAGAAGAAGAAGAAGAGCGGGATCCAGCAATTTATCATTGTTGGGA---CAATTGTTCGCACATAATTGAGATGTGTTGTACATCGG------------------CCCGTTTCCCGCTCATCTTCTTCTTGTTTTGCAGACAAGCGAG----AACAAGTGTTTAT-----------------------GACCCGTTGACG------------------------------------------AGTGAATGA----
s cb4.chrX              8588580 232 + 21540570 aaattctcatttttcatcttgTTTCCAAATCACCGGACAAGTGGCTCTTTAGCAGAACATTTGGCGCGTT--------TCTTT-CCCGAAGAG-------------AGGAGCCCGAGTGGGT--------------------------CCCCTCTCTGCCGATCCAAACAATTTATCATTGTTGGGGGGACAATTGTTCGCACATAATTGAGATGTGTTGTA---CGA----------------------------------------CTC------AGGAAA--AGAGATATAACAAGTGTTTAT-----------------------GACCCGTGAGTAG--------------------------------------Cttagatgatga----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5632537 268 + 20921866 aaattctcatttttcatcttgtTTCCAAACCACCGGACAAGTGGCTCTTTAGCAGAACATTTGGCGCGTTTTGCCGGCTTTTTCCCCTAAGCATC-----------AGGAGCCGccgagaat---------------------tgaaaagacgAGCAGTGGATCCAAACAATTTATCATTGTTGGAG---CAATTGTTCGCACATAATTGAGATGTGTTGTACATCGAG-----------AGGACCCGCGTTTTCTTGTCA-ATTCCTCTT------CAGACA--CGAG----AACAAGTGTTTAT-----------------------GACCCGTCACAA------------------------------------------AGTgaatga----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1870737 261 +  4147112 aaattctcatttttcatcttgtTTCCAAACCGCCGGACAAGTGGCTCTTTAGCAGAACATTTGGCGCGTTTTGCCGGCTTTTT-CCCTGAGCACC-----------AGGAGCCGACGAGAGT-----------------------AAAAGAAGAGCAGCGGATCCAAACAATTTATCATTGTTGGGA---CAATTGTTCGCACATAATTGAGATGTGTTGTACATCGC---------------CCccttgttttctcttca-attcttctt------cagaCA--CGAG----AACAAGTGTTTAT-----------------------GACCAGTCAAAA------------------------------------------AGaggatga----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  703734 339 -   823664 aaattctcatttttcatcTTGTTTCCAAACCGCCGGACAAGTGGCTCTTTAGCAGAACATTTGGCGCACATTTGTCCCTCTTG-CAAACAGCA-------------GTTGGATAGaggggga-----------------------aaaagaaaaagtgaagGATTCGACAATTTATCATTGTTGGGA---CAATTGTTCGCACATAATTGAGACGTTTTGTACAACATTGCCCGCCTGCCAACCTACCCACTTGCTGCTCA-TTCACCCTT--------GTCA----AG----AACAAGTGTTTATAGACTCTGATTTGCctgctctcggacgtttcaaaagtttttctgcattttgtcgtcgcggtgtttgcacacattcttaaaaaatgaatgg
i caeJap4.Scaffold18194 I 23 I 33
e caeRem4.Crem_Contig0   577629 751 -  4500979 M

a score=825.000000
s ce10.chrX             3455890 28 + 17718866 TGATG-----ATCACG-----ACTGATAAT-AAACTTCA
s cb4.chrX              8588812 30 + 21540570 tgatgggtACATGATGG----ATAGCTGACAAA-----A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5632805 28 + 20921866 tgaag-----atgatggcAACAATGATAAT-AA-----A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1870998 24 +  4147112 tgacg-----atgatgg----gTTGATGAT-AA-----A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  704073 33 -   823664 I
e caeRem4.Crem_Contig0   577629 751 -  4500979 M

a score=54742.000000
s ce10.chrX             3455918 66 + 17718866 CTCACCCAGGCAATCCGTGCCGTTCACGCACATCAGTGCCGAAGTCAAGCTGAAGACAGAGCCAAA
s cb4.chrX              8588842 66 + 21540570 CTTACCCAGGCAATCCGTGCCGTTTACGCACATCAGCGCCGAAGTCAAACTGAAGACAGAGCCAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5632833 66 + 20921866 CTCACCCAGGCAATCAGTGCCGTTTACGCACATCAGCGCCGAAGTCAAACTGAAGACAGAGCCAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871022 66 +  4147112 CTCACCCAAGCAATCTGTGCCGTTAACGCACATCAGCGCTGAAGTCAAGCTGAAGACAGAGCCAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704106 66 -   823664 CTCACCTAGGCAATCGGTGCCGTTCACGCACATCAGCGCCGAAGTCAAGCTGAACACCGAGCCGAA
i caeJap4.Scaffold18194 I 33 C 0
e caeRem4.Crem_Contig0   577629 751 -  4500979 M

a score=9279.000000
s ce10.chrX             3455984 166 + 17718866 TATCATTTGACTATGTCATAGGGTTACTCT--AAAATGTT---ACAA------------TTTTTGG--TAAGGA-----AA-GAGAAAA-AATTGTTTGAAGATCACAGAGAAGATGACAAG-------------------------ATTGAATTGAAAA---------------------AGGTTCATTAGGCTGATGA----------AAAGCAGTATAAGCCG-------------TCCCCTTCCGGAGAGAGCCACC
s cb4.chrX              8588908 155 + 21540570 TATCATTTGACTATGTCATAGGGttaatct--aaaatttt---gaaa--tgaata------tttgg--aaataatttttga-gagtTAT-AGAAGTTACAAGATTGGGAAACGGAgcagaag----------------------------aaatttgaaaaaatac--------------gagATTCATTAGTGGGA-----------------ATGGATAAAAC------------------------------GAAACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   578380 178 -  4500979 tATCATTTGACTATGTCATAGGGTTAGTct--aaaattttacagaaagttgattac---attttcg--aaaaaa-----ga-aagaaacgagaaatcagaaga--gaaaagcggaaacgaag------------------------ttctgggtgtagagaaagaT--------------GAGATTCATTAGCCTGATGAGTT----------GGTGTATAAACCA---------------CCCATCC-----GGAGGACT
i caeRem4.Crem_Contig0  M 751 C 0
s caeSp111.Scaffold630  5632899 189 + 20921866 TATCATTTGACTATGTCATAGGGTTAAtctataaaaatat---aaaactagaagaaaatgttccaG--AAACGA-----GATGAGAAGCAATacaagagaaaacaagaaagtaaaaagaaag------------------------ttttatGAT-GCAATAGACC--------------GAGATTCATTAGTCTGATGAGTTCGG----GAGAGGATATAAACCA---------------CCCTTCCG----GGACTACC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871088 180 +  4147112 TATCATTTGACTATGTCATATGGTTAatctaaaaagtttt---aaa-------------tttCTAC--AAATCA-----GA-GATGTACGAAAAGAGGAAGAGTAACGGAATAAAAAGTAGG------------------------AACTATGTTGGAAATAGGCA--------------GAGATTCATTAGTCTGATGAGTTCGGGGCTGGGGGGATATAAACCA---------------CCCTTCCG----GGACTACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704172 223 -   823664 TATCATTTGATTATGTCATATGGGTACGCTCTAGAATGGT---GTCA--TGTACGGtagtttttaattaaaata-----ga-aagaaag-agagggagggagagaaaagaaaaaaagggataaaaaTGTTGGGTGCAACCCGCAACAAATAAATGAAGAGAAAGTTCAGTTCAGTTTTCGGAGATTCATTAGCTTGATGAGTT-------------GTACAAACCTATGGCTGCTGcacacccccacc-------------
i caeJap4.Scaffold18194 C 0 I 29

a score=1773.000000
s ce10.chrX             3456150 26 + 17718866 CAGGGTGTA------TTTCT-ACGCGGAGGACG
s cb4.chrX              8589063 32 + 21540570 ATGGGTATA-TACGTCTTCTGTCTCTCACACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   578558 32 -  4500979 TTGGGTGTATTTCATCTTCT-CCTCCGACGCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633088 23 + 20921866 CTGGGTGGATTTCGTCTTCT-CCG---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871268 26 +  4147112 CCGGGTGTATTTCGTCTTGT-TCG------CCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  704395 29 -   823664 I

a score=84916.000000
s ce10.chrX             3456176 126 + 17718866 CC-----TCGACAAATGAC-----CATCG-CAATGACTAAC-CA---CAACACACGCATGACAAGGTTTCATCTTG-------CATCATTACTTTTCAGATTGAC--T-----AGCTAAACGAAATA--AGAGAATTTCGGGTAAGCAG-----GGAGACAA------
s cb4.chrX              8589095 136 + 21540570 TCATCCTTCGCCAAATGAC-----TATGG-AAAGTACTTACATACACACCCATACGCATGACAAAGTTTCATCTTG-------CATCATTACTTTTCAGATTGACCAC-----AGCTAAACGAAATAAGAGAGAATTCCG--------TTGGGTGGCGACAC------
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   578590 137 -  4500979 TC-CCCTCCGCCAAATGAC-----TATGGCGAAGGACTTACATA---AACCACACGCATGACAAGGTTTCATCTTG-------CATCATTACTTTTCAGATTGAC--T-----AGCTAAACGAAATA--AGAGAATTCCGGGTACGCTGTGTGTGAAGGCGA------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5633111 134 + 20921866 ----TCGCCGCCAAATGAC-----CATGG-CAAGGACTTACACA-ACCACCACACGCATGACAAGGTTTCATCTTG-------CATCACTACTTTTCAGATTGAC--T-----AGCTAAACGAAATA--AGAGAATTCCGGGTACGCACCACA-GAAGGCGA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871294 137 +  4147112 TC-ATCGCCGCCAAATGAC-----CATGG-CGAGGACTTACACA-TCCACCACACGCATGACAAGGTTTCATCTTG-------CATCATTACTTTTCAGATTGAC--T-----AGCTAAACGAAATA--AGAGAATTCCGGGTACGTACTGCA-AAAGGCGA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704424 150 -   823664 -----cgtcgcaaaatgaccaccacacGG-CTGGGACGTAT-TA------CGTACGCATGACAATGTTTCATCTTGCTTGCATCATCCCTACTTTTCAGATTGAC--TACATAAACTAAACGAAATA--AGAGAAGCTAGCTAGTGACCAGGA-GGAAGCAGAAGGAA
i caeJap4.Scaffold18194 I 29 C 0

a score=-16480.000000
s ce10.chrX             3456302  58 + 17718866 AAACG--GGGCG------------------------AGTAGATGGTGTG--------------GCTG---------GCGGTGGCGGTGGGTG-------------------------------AGAG-GAGACCCTCAC-------------------
s caeRem4.Crem_Contig0   578730  39 -  4500979 ---CGACGGCAA------------------------AGTAGG-AG---------------------------------ACGAGTAGT-GGTG-------------------------------AGAC---CA----CAC-------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5633245  51 + 20921866 CGACGACGGAAA------------------------AGTAGGAAG---------------------------------AAGAGTAGTGAGTA-------------------------------AGGAGGACACCATCAC-------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871431  45 +  4147112 CGACG--GGCAA------------------------AGTAGGAAG---------------------------------AGGAGTAGTCGGTG-------------------------------AGACCGGCA----CAC-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704574 156 -   823664 AAGTg--ggaaaatgcgctccattgaaaaaaaaaatagtaggCAGTGTGCGAAATTACACAGAGtcgtcacgcgacgcaaccgcagcgcgtggcgtcggcggcaaaataaagcgtttgaaaaaaggcagtcgccagcaccccacGAATAGATTCTCAc
i caeJap4.Scaffold18194 C 0 I 3
e cb4.chrX              8589231  35 + 21540570 I

a score=50531.000000
s ce10.chrX             3456360  95 + 17718866 AAAAATGCAATTGTTTACGATTGGTT--GAG--------AAAACGAAAAA-----------GACAAATGGGAAATGAGCTCCAA-CACTC----CCGATGTGAAGGCAGAGATAAAAGGTG
s cb4.chrX              8589266  98 + 21540570 aaaaatgaaattgtttACGATTGGTTTGAGA--------AAAACGCAAGA--------CGCGACAAATGGGAAATGAGCTCTCG-CGTTT------GATGCCAAAAGACAGATAATAGGTG
i cb4.chrX              I 35 I 15
s caeRem4.Crem_Contig0   578769  99 -  4500979 AAAAATGCAATTGTTTACGATTGgtt--gag--------aaaacgaaaa------------gacaAATGGGAAATGAGCTCCCGACGCTTCGAAGCGATTTCCAAGGACAGATAATAGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633296 102 + 20921866 GAAAATGCAATTGTTTACGTTTAGTT--GAGaaacg---aaaacgaaa-------------aacaaatgggAAATGAGGTCCGA-CACTTGAAAGCAATTTTGAGACACAGATAAAAGGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871476 103 +  4147112 AAAAATGCAATTGTTTACGATtggtt--gagaaaag--aaaaacgaaa-------------gacaAATGGGAAATGAGCTCCGT-CTCTTTGAAGCGATTCCTAGACACAGATAAAAGGtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704733  85 -   823664 aaaattgcaattgTTTACGATTggtt--ggaagaaaaaaaacacggaagaaaccgaaccgaaaaaaaagggaaatg-----tGA-----------------------------AATGggtg
i caeJap4.Scaffold18194 I 3 C 0

a score=-10978.000000
s ce10.chrX             3456455 29 + 17718866 ------AGCCGTGTCGTTTCGTTTC----------------------------TGATTGGGCA
s caeRem4.Crem_Contig0   578868 27 -  4500979 ------TGACTTGTTATTTCGCTTT-------------------------gactagaa-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633398 29 + 20921866 ------TGAAttgattcttgatttt----------------------------tagatgGGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871579 57 +  4147112 ------agaattgtttttgaatttttttttctgactcaaAAATCCTCACTGAATattttgact
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704818 24 -   823664 agtgagtgagtgacTGAATGAGTC---------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8589364 15 + 21540570 I

a score=24637.000000
s ce10.chrX             3456484 389 + 17718866  
s cb4.chrX              8589379 363 + 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   578895 380 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633427 391 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1871636 395 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  704842 321 -   823664  
i caeJap4.Scaffold18194 C 0 I 35

a score=-5030.000000
s ce10.chrX             3456873 46 + 17718866 TGCGCCCTGCCTCTC--CCATTCTCTACACCCCACAAGATACCCCCAC
s cb4.chrX              8589742 17 + 21540570 AGCGCCA----------CGGTCTCCC---------------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   579275 27 -  4500979 TGCGCCACCGCTACTACCCGTCTTCC---------------------C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633818 23 + 20921866 TGCGC------------CCGTCTTCTGTTC------AGA-------GC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1872031 15 +  4147112 TGCGC------------CCGTCTTCT---------------------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  705163 35 -   823664 I

a score=13951.000000
s ce10.chrX             3456919 660 + 17718866  
s cb4.chrX              8589759 781 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   579302 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5633841 544 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1872046 590 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  705198 850 -   823664  
i caeJap4.Scaffold18194 I 35 I 20

a score=-4509.000000
s ce10.chrX             3457579 35 + 17718866 TGT--GGTCGTGGCGGCGGCGGCGGTGGTGGTTTTTG
s cb4.chrX              8590540 11 + 21540570 -TTTCGGACG-------------------------TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   579886 14 -  4500979 ttttcgtACG-----------------------TTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5634385 10 + 20921866 T----GTACG-----------------------TTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1872636 10 +  4147112 T----GTACG-----------------------TTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  706048 20 -   823664 I

a score=27245.000000
s ce10.chrX             3457614 105 + 17718866 TCG--TTACGTTAAACTAGT--------------AGTGCAGCAGC--AGCA--CAAAAAGTCTATATTTCAATGTGAAACATATGATAATAGTGTGCGAAAAA---TGTCGCAAAAACGCGG------CGGT---------------GA
s cb4.chrX              8590551 126 + 21540570 ACG--TTACGTGAAACTAGTATATATATATCTAAAGCTCCGAGAGATGGAA--AGAAAAGTCTC--AATAAATATGAAACATATGATAATAGTGTGCGAAAAA-TGTGTCGCAAAAA-----------CGCAGGAGACTCCT-----GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   579900 116 -  4500979 CTG--TTACGTTAAACTAGT--------------AACTCTTGG----GGCA--AGTGAAGTCTT---CTCAATATGAAACATATGATAATAGTGTGTGAAAAA---TGTCGCAAAAACGCGTCCTCCCCGCAGAAAACGTTA-----TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5634395 111 + 20921866 TCG-TTTACACTAAACTAGT--------------AGTC---------GACCACCGAGAAGTCTATATTTCAATATGAAACATATGATAATAGTGTGCGAAAAA---TGTCGCAAAAATGCGT------CGCTCAAGAggtga-----ga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1872646 113 +  4147112 TCGTTTTACACTAAACTAGT--------------AGCC---------AACC----GAAAGTCTATATTTCAATATGAAACAAATGATAATAGTGTGCGAAAAA---TGTCGCAAAAACGCGG------CGGCGGCGTCGTTGCCATTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  706068  79 -   823664 ----------------TCGC--------------CACA---------TGTA--CGAAAAGTACG--------CGAAAAACGTAAAATAATAGtgtgcgaaaaaaaatgtcgcaaaaactcca------ccacca---------------
i caeJap4.Scaffold18194 I 20 I 47

a score=117.000000
s ce10.chrX             3457719 16 + 17718866 AGGAGT-----GTAGAAAAAT
s cb4.chrX              8590677 16 + 21540570 GGATGA-----GAAGAAGGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   580016 16 -  4500979 AGATag-----atagagaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5634506 16 + 20921866 agagag-----aaaagacggA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1872759 21 +  4147112 AGagggtttttgaagaaagga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  706147 47 -   823664 I

a score=47400.000000
s ce10.chrX             3457735 192 + 17718866 AAACGCGGA--GGTT------------ACGATGAGCTTC-AAGAAAATTGGAAGGAAAT---------------------------------------AGAAATGTGTGGAAAACGGGGGGGGGGGTG----AGCTC-----CGTTTCGTTTTCAAGTACT--ACTTCTGAATTGAGC-------------------CC-------GTG---CTGTCATCAAAGCTAGGAAAACGGAAGA---------------------------AGAAGACTGCAAAGCTATGAAAAAAAACAACAACAAAAATATATAT
s cb4.chrX              8590693 192 + 21540570 GAAAAactg--agaagaagaagg----acgatgagcttcgaagaaaattggaagaaaat---------------------------------------agaaaaat-----------------gggagaaaagaCTCGGGGAGGGCTCGTTTTCAAGTACTACACTTCTGAATTGAGC-------------------TCAGGATTGTTGTGCCTGTCATCAAATCC---GAAATAGAagacatt----------------------tagaaaaaaacaaa---------catagcaagaaaataaat------
i cb4.chrX              C 0 I 345
s caeRem4.Crem_Contig0   580032 168 -  4500979 gaaagtaGG--GGAGGAATCCGATGCTGCGATGAGCTTC-AAGAAAATTGgaaggaaat---------------------------------------agaaaaat-----------------gggag----gGCTC-----CGTTTCGTTTTCAAGTACT--ACTTCTGAATTGAGC-------------------TC-------TTG---CTGTCATCAAAGCC-AGAAAACGGAAGGAAAG----------------------CAGAagtatgcaaa---------------aaaaaaacaa--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5634522 160 + 20921866 GAAAGATGA--GGAT------------ACGATGAGCttc-aagaaaattcgaaGGAAAT---------------------------------------AGAAATG------------------GGGAG----GGCTC-----CGTTTCGTTTTCAAGTACT--ACTTCTGAATTGAGGTC-----------------TC-------TTG---CTGTCATCAAAGCC-GCAAAACGGAAGG------------------------------AGtatgcaaa---------aaaaagaacaacatAA---GATAT
i caeSp111.Scaffold630  C 0 I 350
s caePb3.Scfld02_0      1872780 151 +  4147112 gaaggagga--agat------------ACGATGAGcttc-aagaaaattggaaggaaaT---------------------------------------AGAAATG------------------GGGAG----AGCTC-----CGTTTCGTTTTCAAGTACT--ACTTCTGAATTGAGA-------------------TC-------TTG---CTGTCATCAAAGCT-----AATAgagga---------------------------------atgcaaa---------aaaaacaacacaacaA---GATAA
i caePb3.Scfld02_0      C 0 I 322
s caeJap4.Scaffold18194  706194 247 -   823664 GGACGTGGATGAGAT------------ACGATGAGC--C-GTGAAAATTGGTGGAAAACGAGGCGAGGCAATGTGAGGGGcgaagatgaagccgaagaagaagaagaagaagaagaagaagaagaagg----agctC----------CATTTTCAAGTACTACTCTTCGGAATTGAGCTTCTTCTTCTAGTCTCGTGTC-------TTG---TTGACATC--AGTC---GAAATGGAATGAGATGGAAAGAGACAACAAGgtccgaaaaaaaagtggaaa---------aaaagggaaaa-------------
i caeJap4.Scaffold18194 I 47 C 0

a score=406.000000
s ce10.chrX             3457927 34 + 17718866 AGAAATCAGGCGTGG-GACCCAAAACAAAAGCCTA
s caeJap4.Scaffold18194  706441 35 -   823664 aacgaTAAGGTGGAGCGAGCAAGAGCAACGGCTTG
i caeJap4.Scaffold18194 C 0 I 72
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I
e caeRem4.Crem_Contig0   580200  0 -  4500979 C

a score=-348.000000
s ce10.chrX             3457961 88 + 17718866 GCTCTAAAAAACCCCAAATTAAAGCCTAGAAGAGCA----GCATGAACAATGAAAAATTTTCAGACATTAAATAAAACAATTAATATTCACC
s caeRem4.Crem_Contig0   580200 73 -  4500979 ------aagaacaaCAAGATAGATACAGGAGGAAGAAGGCGCATGAATGGGCGAGAACCCGTAGAAAT-------GACTGTTGGTA------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e caeJap4.Scaffold18194  706476 72 -   823664 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-9916.000000
s ce10.chrX             3458049  76 + 17718866 GGGTCTTT------ATTTTTTTGC-----------------------------------------------AAAGCGGCCAAAATGTAAAAA--------------------CGAAACGAA-----------------------------------ACGTTCATAATTCTT----CCAACACGCTAAC
s caeRem4.Crem_Contig0   580273   6 -  4500979 -------------------------------------------------------------------------------------------------------------------AACGAA-------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  706548 188 -   823664 GGGTTTTTGGGGCCAATTTATTGCTACTGGGCTagaacgaaacgagaaggagaaagaagaggcgaagaagaaatgcagtcagcaaggaagaagaagaagaagaagagaagggggaaacgaaggaaAATGCAATAAAAGTCGAATGGTTTCGGCACAACGTTCATAtttttttGCACCCACACGCAAAC
i caeJap4.Scaffold18194 I 72 I 62
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-421.000000
s ce10.chrX             3458125 48 + 17718866 CAAGTCATTTAGATTTTTATTTA---TTTGTTACTTATAACATCTACCTTC
s caeRem4.Crem_Contig0   580279 36 -  4500979 TAAGATAATAGGGTTTTTGTGGAGAATTTATTGCTG---------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e caeJap4.Scaffold18194  706736 62 -   823664 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-4752.000000
s ce10.chrX             3458173 75 + 17718866 ATTTGTATATTTAGTCTAAAAAATGTTACCAACTATTCAGAAGTTTAATGTTGAA---ATCAGAA-CTAGTAATAGTGG---------
s caeRem4.Crem_Contig0   580315 48 -  4500979 ---------------CTGGACGAT--TGCCCACTACTGGCGTCCGTGATGGTG--------------TAGTGGTAGTGg---------
i caeRem4.Crem_Contig0  C 0 I 24
s caeJap4.Scaffold18194  706798 84 -   823664 ATTTGTTACTGT---TTAAAGGAGG-TTCCAACTTTTCGCGGAAACTGTTTTAAACACATCGGAATCGCACAAAAATTGCCTTGATTT
i caeJap4.Scaffold18194 I 62 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-1187.000000
s ce10.chrX             3458248 33 + 17718866 GTGCTATAATTATGGTGACA-----------CTATAAAATTT---------------------AT
s caeJap4.Scaffold18194  706882 60 -   823664 CTGcca-aatt----tgacaaaaaaaaaggtccacgaggttttctaggccggcggccgacaacgt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I
e caeRem4.Crem_Contig0   580363 24 -  4500979 I

a score=-917.000000
s ce10.chrX             3458281 52 + 17718866 CGCTACGGAAAATTGAT-------AACACAATTCGATACATTTCTAGTAACTTC--CACAT
s caeRem4.Crem_Contig0   580387 50 -  4500979 cGCTGCAGGGAGG-----------AACGAAATGCAATAAAGTCCGAATGGATTGGGCACAC
i caeRem4.Crem_Contig0  I 24 C 0
s caeJap4.Scaffold18194  706942 59 -   823664 cttttcgaaaaattgtttgtcatCAGCAAGAATCGCTTTGTTTCTTCTATTTCC--TTCAT
i caeJap4.Scaffold18194 C 0 I 137
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-673.000000
s ce10.chrX             3458333 128 + 17718866 ATTTATAGTACTATGATCGAAAAAAAAGAAGCTGATAATAATT--TTTAAAAAGAATTTTGAAATTCTATAAAGAGTGGAAAAAAGCGGTGTCAACTTCCTGCACGTCACCACTATATTAAAAATTTTGA
s caeRem4.Crem_Contig0   580437  97 -  4500979 GTTCATAATtttacacacacacacatagtCTACGATAGGCACTGCTTCAATAATAttgtttcaat-----------------------------atttcc----agTCACCACTTCTCTCAAAACAATGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e caeJap4.Scaffold18194  707001 137 -   823664 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-1526.000000
s ce10.chrX             3458461 14 + 17718866 GACCAACATGTTTT
s caeRem4.Crem_Contig0   580534  5 -  4500979 AACTG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  707138 13 -   823664 gataaacaatatt-
i caeJap4.Scaffold18194 I 137 C 0
e caePb3.Scfld02_0      1872931 322 +  4147112 I
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=-10752.000000
s ce10.chrX             3458475 100 + 17718866 TTTTCGATAAAAAACCG----TGAATACAAGGATTTCCTATTGAAAAGTCAAAGTCAAAAAGAAGCGCCAAGCTTTCTTAT--TCCGGCTGGCACA--GACGT-----------------TGGAC
s caeRem4.Crem_Contig0   580539  66 -  4500979 ------------TACAA----------GACGGATGTGAAAGTAGAAATCAGAATGCTTAACCGGGTGAGAAGCTTTC-----------ACCGCCTA--GAC------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1873253 102 +  4147112 ttttcagaagaaaacagtTCGCGAACTGAGGGatttgaaaacggaa---agaaagtaaaattcga-gaaaagttTTCCTTT--TCCGTCCTGCCTACCGACGC-----------------CTATC
i caePb3.Scfld02_0      I 322 I 20
s caeJap4.Scaffold18194  707151 114 -   823664 tttacaaagaaaaaaagttc-----tagagGGAC----AAAAAGAGGTGTAAAAGTTTAGAGAAGAGAGGAGGCGTCCATCCGTCCACTCCTCCCA--AACACGATAAAAATGAATACAGCAAAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8590885 345 + 21540570 I
e caeSp111.Scaffold630  5634682 350 + 20921866 I

a score=3362.000000
s ce10.chrX             3458575 19 + 17718866 AAACA---TATGGTTTTCA---GGA
s caeRem4.Crem_Contig0   580605 19 -  4500979 AAACA---TATCGTTTTCTTGG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635032 16 + 20921866 aaaCA---CATCGTGTTCT------
i caeSp111.Scaffold630  I 350 C 0
s caePb3.Scfld02_0      1873375 16 +  4147112 AAACA---GATCGTGTTTT------
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18194  707265 19 -   823664 AAACAAGCGATCGTATTCA------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8590885 345 + 21540570 I

a score=64281.000000
s ce10.chrX             3458594 406 + 17718866  
s cb4.chrX              8591230 398 + 21540570  
i cb4.chrX              I 345 I 34
s caeRem4.Crem_Contig0   580624 403 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635048 394 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1873391 384 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  707284 365 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1008.000000
s ce10.chrX             3459000 15 + 17718866 TTGT--GGTGGACACCC-
s caeRem4.Crem_Contig0   581027 11 -  4500979 TTG------GGAAACCc-
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold630  5635442 11 + 20921866 TTG------GGAAAACC-
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1873775 11 +  4147112 TTG------GGAAAACC-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  707649 18 -   823664 TTGGTAAACGAAAAACCA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8591628 34 + 21540570 I

a score=395.000000
s ce10.chrX             3459015 4 + 17718866 GACT
s caeSp111.Scaffold630  5635454 4 + 20921866 CTCT
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1873787 4 +  4147112 CTCT
i caePb3.Scfld02_0      I 1 I 46
s caeJap4.Scaffold18194  707667 4 -   823664 CACC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8591628 34 + 21540570 I
e caeRem4.Crem_Contig0   581038 45 -  4500979 I

a score=-2024.000000
s ce10.chrX             3459019 13 + 17718866 GGTAGCGGGGTCC-
s caeSp111.Scaffold630  5635458 13 + 20921866 ATTTCTTAGCCAC-
i caeSp111.Scaffold630  C 0 I 27
s caeJap4.Scaffold18194  707671  8 -   823664 ------AACGCGCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1873791 46 +  4147112 I
e cb4.chrX              8591628 34 + 21540570 I
e caeRem4.Crem_Contig0   581038 45 -  4500979 I

a score=1237.000000
s ce10.chrX             3459032 4 + 17718866 GTCC
s caeRem4.Crem_Contig0   581083 4 -  4500979 GTAC
i caeRem4.Crem_Contig0  I 45 C 0
s caeSp111.Scaffold630  5635498 4 + 20921866 GTCC
i caeSp111.Scaffold630  I 27 C 0
s caePb3.Scfld02_0      1873837 4 +  4147112 GTCC
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold18194  707679 4 -   823664 AAAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8591628 34 + 21540570 I

a score=30351.000000
s ce10.chrX             3459036 76 + 17718866 AAAACATCCGGTAAGAAAAAAGGCGAAAAAGGCAAAAAACCGAAAT-GAAGAGTGTCATGTTGACTCAACAGATTTT
s cb4.chrX              8591662 67 + 21540570 AAAACATCCGGTCCCGTTGA----GAAACGGTTCAAAAAAGGGAAT-GCAAAGTGTGATGTTGACCAAAAAG-----
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   581087 73 -  4500979 AAAACATCCGGTAGTATtca----aagaaagcaaaaaagtggaaatgggAAAGTGTGATGTTGACCGAAAAGATATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635502 64 + 20921866 AAAACATCCGG-------------GTGGAGTCagtcaaaatgaaataagtGAGTGTGATGTTGACCgaaaagatatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1873841 76 +  4147112 AAAACATCCGGTAGTATCtaa-atgcaaagaaaaaaaaatggaaatggaaatgtgTGATGTTGACCGAAAAGATATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  707683 65 -   823664 ACAACATCcggta-----------aagaaaaaaaaacacaagaaaT-GAGAAAGGTAATGTTGACCGAGAAGATTTT
i caeJap4.Scaffold18194 C 0 I 53

a score=9409.000000
s ce10.chrX             3459112 18 + 17718866 T--------------TTTCGGATAGGTAGTCA
s cb4.chrX              8591729 17 + 21540570 ---------------CTTAGCATAGGTAgtca
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   581160 32 -  4500979 TGGGTTGTGCTTGTTTTTTGGATAGGTAGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635566 32 + 20921866 ttttgtGTGCTTGTTTTTTGGATAGGTAGTCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1873917 32 +  4147112 ATTTGTGTGCTTGTTTTGTGGATAGGTAGgca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  707748 53 -   823664 I

a score=-9951.000000
s ce10.chrX             3459130 26 + 17718866 AGTGAATGTGCAATTTGATATTTTCA---------------------------------------
s caeRem4.Crem_Contig0   581192 50 -  4500979 -----------GTTC----TCATTGACTCCGGAAAAAATAGGATTGTATAATAACAATAACTACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635598 23 + 20921866 -----GTgt-cgatttgaatttttctcgc------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1873949 18 +  4147112 -----a-gt-cattt----ttttttgttc------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  707748 53 -   823664 I
e cb4.chrX              8591746 24 + 21540570 I

a score=-9717.000000
s ce10.chrX             3459156 21 + 17718866 ---------------------------------------------------------AAAGAACAAAACAAAACAATA
s cb4.chrX              8591770 25 + 21540570 --------------------------------gaaa---------------------aacaagcaaaaagaaagcaac
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0   581242 40 -  4500979 -------------AGCTagttgaga----aagaaaa---------------------agaaagtaaagtgaaaggaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635621 78 + 20921866 gaaaaataacaaaaactgGTGGGATTGTacatgaaaaaacaatagatTTCTTTTACTAGAAGTTGGGTAGatggaatg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1873967 63 +  4147112 aatgaatacaaaaaactggtggagtt---tataaaa------------ttttgagtgaGAAAGCTAAGAGAAAATAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  707748 53 -   823664 I

a score=55877.000000
s ce10.chrX             3459177 684 + 17718866  
s cb4.chrX              8591795 619 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   581282 693 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5635699 722 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1874030 691 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  707801 736 -   823664  
i caeJap4.Scaffold18194 I 53 I 63

a score=8549.000000
s ce10.chrX             3459861 62 + 17718866 GCATTGTCTCAAGCTGTCCTCTAATGGTAACGAGC-------TTGACACGGAAGATGGGGATGGAGGAG
s cb4.chrX              8592414 42 + 21540570 ----GGTCTCAAGCTGTT--CTCCTA----------CAGGGCTCCA-----------GGAACCCAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   581975 57 -  4500979 AGA-GGTCTCAAGCTGTC--CTAATGGTTACTAGCTCAGGAATTGACAT------TGGGAA---AATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636421 53 + 20921866 G---TATCTCAAGCTGTC--CTAATGGTTACGAGCTCACG--TTGACAt------tgggaa---aatga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1874721 55 +  4147112 G---TATCTCAAGCTGTC--CTAATGGTTACGAGCTCTTGGATTGACAT------TGGAAG---AATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  708537 63 -   823664 I

a score=65252.000000
s ce10.chrX             3459923 393 + 17718866  
s cb4.chrX              8592456 432 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   582032 443 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636474 369 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1874776 402 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  708600 415 -   823664  
i caeJap4.Scaffold18194 I 63 I 55

a score=3230.000000
s ce10.chrX             3460316 44 + 17718866 GTATGTGTTTCCCCAATAAA-----GTCGAAAAGATGTCGGCGGGTTG-----------C
s cb4.chrX              8592888 32 + 21540570 ------------CCGATGAAGTGTCGTC----------------GTCGTCCTCGGGGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   582475 16 -  4500979 ------------CCGATGAA-----GTC----------------GTCG-----------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636843 16 + 20921866 ------------CCGATGAA-----GTC----------------GTCG-----------T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1875178 16 +  4147112 ------------CCGATGAA-----GTC----------------GTCG-----------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  709015 55 -   823664 I

a score=32291.000000
s ce10.chrX             3460360 48 + 17718866 TTTATGACTCCAAACA-------AAAACCTCCAAATGTGGCAATAATTTATTCAT
s cb4.chrX              8592920 48 + 21540570 TTTATGACTCCAAACA------CAACAAC-CCAAATGTGGGAATAATTTATGCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   582491 47 -  4500979 TTTATGACTCCAAACA-------AAAACC-CTCAATGTGGGAATAATTTATGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636859 43 + 20921866 TTTATGACTCCAGAC--------AAAACC----AATGTGAGAATAatttattcct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1875194 44 +  4147112 TTTATGACTCCAAACA-------AAAACC----AATGTGGGAATAATTTATGCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  709070 51 -   823664 ttttcaaaacaaaacaaaaaagaaaagcc----cAAGTGCGAATAATTTATTCAC
i caeJap4.Scaffold18194 I 55 I 78

a score=-18193.000000
s ce10.chrX             3460408  97 + 17718866 CT------CTC-------------A--------TCTTCAGCCCGACGTTTTCGGTTC-AAACAAGCATATAT-TTTTTTTTAGTGTCTCATTTTTAGTGGCTTGTAAAAAA--------------GTAGAAACCTACTG-----A
s cb4.chrX              8592968  97 + 21540570 CCTAGTCGTTT-----TGTCGTTTAGGCTTTTCCTCTCTTCTCAATATGCT-------AGACATGCGcatgatgttttttt---------ttgctaggTT-----ATAAAA--------------TGAGAAGCTAG--------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   582538  85 -  4500979 CT---CCTTTT-----TATCGTTTA--ccctctctctccttttcttaTGCTTGTTTCGAAACAAGCATATCa-gtttt----------------tag--------acaaaa--------------atagaaacc-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636902  83 + 20921866 tt------tttctatctgaCGT---------------------------TTAGCTTCTAAACAGCCGTATCT-TTTTTA---------------TAGAGTTG--aacgaaaatt-----------aaaagaacCGGTCTCTGAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1875238 108 +  4147112 TC------TTT-----TGGCGTTTA--------CCCTCCTCCCACCATGTTAGCTTCTAAACAGGcatatct-tttttatt---------t---tagatttggaaacaaaaaatttgagtgaagaaagaaaaccgGTGT-----A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  709121  78 -   823664 I

a score=31011.000000
s ce10.chrX             3460505 436 + 17718866  
s cb4.chrX              8593065 440 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   582623 472 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5636985 506 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1875346 489 +  4147112  
i caePb3.Scfld02_0      C 0 I 110
s caeJap4.Scaffold18194  709199 537 -   823664  
i caeJap4.Scaffold18194 I 78 C 0

a score=-27812.000000
s ce10.chrX             3460941  90 + 17718866 TCTTGCCCC---------CGCCTGTTAAAATCCTT-------ATAACGG------------------------GTGAGTG------------AAGACGAGGAAGAAGA------AGTAATGGTAAAAAT-----GAAGTCAAAACTTGGTAC------A-
s cb4.chrX              8593505  73 + 21540570 ------------------------tttaaattgtt-------ataATCGGGTAT-------------------GTTTATAA-----TCCTTTAAAACAAAAGAtacga------atttt-------------------ttaaacaatcgAAT------A-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   583095  87 -  4500979 --acaatCT---------TCCCTGTTTAATTCAAT-------AAAACTGAGAATGGAG----------AGTGGGTTTGAA--------CtataaaacatgaaatatGA------------------------------CTACTCGATGGCAC------G-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5637491  92 + 20921866 -tccAAACC---------TTCATGTTCGAATTGTT-------ATAGTTG------------------------GTTTATA---------AAAAGAACATGAAATATGA------GTTTTGGATCAAA-----------TTTAGAAATAGGGTCCAGAGG-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  709736 157 -   823664 ---TAATCCGTGGTAATTCTACAGTTCGAATTCTTATTTCAAATGACTGAATACAGAGGAAATTGAGCAgcgagtcagcaaacgcgcccaggTGAACAAGGGCAATGATCGAAcggttttgctatttttttcccgttttcagaaaaaaaaacccggcaaa
i caeJap4.Scaffold18194 C 0 I 136
e caePb3.Scfld02_0      1875835 110 +  4147112 I

a score=-1654.000000
s ce10.chrX             3461031 8 + 17718866 TTTTTTGA
s cb4.chrX              8593578 8 + 21540570 CCCGCAAT
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   583182 8 -  4500979 CTAAATAA
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5637583 8 + 20921866 TCCAAgat
i caeSp111.Scaffold630  C 0 I 11
s caeJap4.Scaffold18194  710029 8 -   823664 ttttttaa
i caeJap4.Scaffold18194 I 136 C 0
e caePb3.Scfld02_0      1875835 110 +  4147112 I

a score=423361.000000
s ce10.chrX             3461039 676 + 17718866  
s cb4.chrX              8593597 589 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   583202 657 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5637602 663 + 20921866  
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0      1875945 675 +  4147112  
i caePb3.Scfld02_0      I 110 C 0
s caeJap4.Scaffold18194  710037 785 -   823664  
i caeJap4.Scaffold18194 C 0 I 2102

a score=-6604.000000
s ce10.chrX             3461715 12 + 17718866 GTATTTAAGATT---------------------------
s cb4.chrX              8594186 35 + 21540570 ----ttagGAGGATCGTGAATGTCTAggaaagaaatttt
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   583859 20 -  4500979 -------GGGTAATTGTTATT------------AATATT
i caeRem4.Crem_Contig0  C 0 I 57
s caePb3.Scfld02_0      1876620  3 +  4147112 GTA------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  710822 2102 -   823664 I
e caeSp111.Scaffold630  5638265  0 + 20921866 C

a score=-3577.000000
s ce10.chrX             3461727 57 + 17718866 CGCATTTCTTTTCAGAAAT-------TTGAAAAGCT--------------------CAAATTATTTCAATTTTCATTAAATTCT-----
s cb4.chrX              8594228 89 + 21540570 caaataaaattttcagagcaacggttttttgaaactgagaGAATGTTTCACactgagaaatttttttaaatttcaacctATTAAGTTCT
i cb4.chrX              I 7 I 176
s caePb3.Scfld02_0      1876623 37 +  4147112 --------ATTTCAAGAAC-------CTGTGGAGTTG-------------------GAAATTATCATGAAA------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  710822 2102 -   823664 I
e caeSp111.Scaffold630  5638265  0 + 20921866 C
e caeRem4.Crem_Contig0   583879 57 -  4500979 I

a score=-3873.000000
s ce10.chrX             3461784  85 + 17718866 ATAAAATAATGTTCCCTTTGATTTTTCAGTTTTTTCTCGATTCGCAA----TTTACATTGAAATTTC-------ATTTTGAAACttttt----------------attattt
s caeSp111.Scaffold630  5638265  41 + 20921866 ---------------------gtttctattttcgCGGAAGTTTAAAT------------ATAAGTGC--------------------------------------ATTATGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1876660 101 +  4147112 -----------ATCCCGCCGagttcttaattttttgatgattcagATTCTCGTTTCATGAGATGTgctacaaaatttttgaaacgtgtCAAAACGGGTGTAAAAAACTATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  710822 2102 -   823664 I
e cb4.chrX              8594317 176 + 21540570 I
e caeRem4.Crem_Contig0   583879  57 -  4500979 I

a score=-58035.000000
s ce10.chrX             3461869 323 + 17718866  
s cb4.chrX              8594493 457 + 21540570  
i cb4.chrX              I 176 I 1
s caeSp111.Scaffold630  5638306 109 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1876761 353 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  710822 2102 -   823664 I
e caeRem4.Crem_Contig0   583879  57 -  4500979 I

a score=48180.000000
s ce10.chrX             3462192 128 + 17718866 --------CAGATCATAAAA-AATATAACCTAGATCTCCGAAAACGGTTATTAGATTATGT---------------------CTCTTCGGTGTCTCTTA-AGAGATAACTAAATCC-----TT-TGCAAGATGAGATAACACCTC-----GACTTT------CTCCCACTTTTATT
s cb4.chrX              8594951 159 + 21540570 --------AAAGACATAAAT-TACATA---AAGATCTCCGAAAACGGTTATTAGATTATGTCCATTTTCGCTCTTTTCTCCCATCTTGATCCTCTCTTGGAGATAAAAGTAAATCCAGGATTTCTGCGAGATGAGATAACACTTCTTGTGTGTTCT-CGACAC----CATTTTATT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   583936 137 -  4500979 --------cagatcATAAAT-AATATG---TAGATCTCCGCAAACGGTTATTAGATTATGT-------------------CTCTCTCGGGTGTCCTTTAAAGATAAAAGTAAATCCAGGATTT-GGTGAGATGAGATAACACCTC-----CGTTCC-CGACACTTT-CTCTTTATT
i caeRem4.Crem_Contig0  I 57 C 0
s caeSp111.Scaffold630  5638415 138 + 20921866 CCCACAAAAGGATTATAAATAAATATG---TAGATCTCCGAAAACGGTTATTAGATTATGT-----------------------GTCCTCCGACCTTTGTAGATAAAAGTAAATCCAGG-------TGAGATGAGATAACACCTC-----CGTTCTCCgacactttcttttttatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1877114 143 +  4147112 CTCGCAAAAGGATTATAAATAAAACAT---TAGATCTCCGAAAACGGTTATTAGATTACGT-----------------------CTTCCCCTTTCTTTATAGATAAAAGTAAATCCAGGACTT-TATGAGATGAGATAACACCTC-----CGCTCT-CGACATGTTCTCCTTTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  710822 2102 -   823664 I

a score=462395.000000
s ce10.chrX             3462320 637 + 17718866  
s cb4.chrX              8595110 632 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   584073 647 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5638553 611 + 20921866  
i caeSp111.Scaffold630  C 0 I 40
s caePb3.Scfld02_0      1877257 620 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  712924 653 -   823664  
i caeJap4.Scaffold18194 I 2102 C 0

a score=1820.000000
s ce10.chrX             3462957 2 + 17718866 AA
s cb4.chrX              8595742 2 + 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   584720 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 64
s caePb3.Scfld02_0      1877877 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 117
s caeJap4.Scaffold18194  713577 2 -   823664 AA
i caeJap4.Scaffold18194 C 0 I 19
e caeSp111.Scaffold630  5639164 40 + 20921866 I

a score=0.000000
s ce10.chrX             3462959 11 + 17718866 CAATTGAGTAA
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeJap4.Scaffold18194  713579 19 -   823664 I
e cb4.chrX              8595744  0 + 21540570 C
e caeSp111.Scaffold630  5639164 40 + 20921866 I
e caeRem4.Crem_Contig0   584722 64 -  4500979 I

a score=-97.000000
s ce10.chrX             3462970 70 + 17718866 CGCTTCTGTGAATAATTATTTTTTAATGGTCTAAAA---ATCGCGTTGACAAATTGTGCAGTGCGGTTTACAG
s cb4.chrX              8595744 57 + 21540570 ----------aataaagataAATTAAGAACTCAAAAGTTATAGAGTTCAACAATGGAGC----CGG--TACAG
i cb4.chrX              C 0 I 26
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeJap4.Scaffold18194  713579 19 -   823664 I
e caeSp111.Scaffold630  5639164 40 + 20921866 I
e caeRem4.Crem_Contig0   584722 64 -  4500979 I

a score=0.000000
s ce10.chrX             3463040 59 + 17718866 TTTTTGAAAAACTGACGAATGAAGTTTTTTGTAACATTGATGGTCCAAATCTTCGGTTT
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeJap4.Scaffold18194  713579 19 -   823664 I
e cb4.chrX              8595801 26 + 21540570 I
e caeSp111.Scaffold630  5639164 40 + 20921866 I
e caeRem4.Crem_Contig0   584722 64 -  4500979 I

a score=-1697.000000
s ce10.chrX             3463099 324 + 17718866 TTCGGGGTTACCAAAAATTTTCAACTGACAAAATAGTGATAATTTTTTTT----TTCTGTAGTTTAACACTAAAAAATGAGGTGACATATTTGAACTGACTC----AGAAT---ATGCCGTTTTATTCTCTATTTGTGCGGCACCCCAACTGTTTAACTGACA-----GCATATGTCTCGAATGCTTTTGAAGATATTAAGAAGTTCAAAAACAATAAATTTACAGAGAAATTTAACAAAACTGTGCTCAGTTAAAATTTTTACAAAAAATCCAATTTGACCGAGATACGAAC--TGTCAGGGTTGAGCCATGGAAATGCCGCAGTAATAGAGATTATAAGG
s cb4.chrX              8595827 250 + 21540570 ctcaaaaacaccaaaaa---------gGCAAATTTCTGTTGAATTGTTATATAATTTTGTTG-TCAACA---------GAGGCTACTCGTTTTA--TGACCCTAGTAAAATCGAATTGCGAGTTTTTCATCGTTC------CATCCCAAAT-----ACGAACAAATTGGCACAGGTTTCAGCTAGGTTTTAAACTAGTAACGGATCCG------------------------TTAGGA-------------TTAACGTTCtga---------taatttttctgataCTCGAACAATGGCAG---------ACGGAAAAGCCAATGTGAT-----TTTCAAGG
i cb4.chrX              I 26 I 67
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeJap4.Scaffold18194  713579  19 -   823664 I
e caeSp111.Scaffold630  5639164  40 + 20921866 I
e caeRem4.Crem_Contig0   584722  64 -  4500979 I

a score=0.000000
s ce10.chrX             3463423 37 + 17718866 TAAACTGTCAAAGTAGAAAAGTGCAGGATTAAGTGAA
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeJap4.Scaffold18194  713579 19 -   823664 I
e cb4.chrX              8596077 67 + 21540570 I
e caeSp111.Scaffold630  5639164 40 + 20921866 I
e caeRem4.Crem_Contig0   584722 64 -  4500979 I

a score=620.000000
s ce10.chrX             3463460 27 + 17718866 AAAATACGTAATATTATTCAAAGTATT
s caeJap4.Scaffold18194  713598 27 -   823664 aaaaaatatcaaatttataAATGTATC
i caeJap4.Scaffold18194 I 19 C 0
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e cb4.chrX              8596077 67 + 21540570 I
e caeSp111.Scaffold630  5639164 40 + 20921866 I
e caeRem4.Crem_Contig0   584722 64 -  4500979 I

a score=-656.000000
s ce10.chrX             3463487 5 + 17718866 AAACT
s cb4.chrX              8596144 5 + 21540570 AAATC
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   584786 5 -  4500979 AAGAC
i caeRem4.Crem_Contig0  I 64 C 0
s caeJap4.Scaffold18194  713625 3 -   823664 -AAC-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1877879 117 +  4147112 I
e caeSp111.Scaffold630  5639164 40 + 20921866 I

a score=352570.000000
s ce10.chrX             3463492 375 + 17718866 TTACCTGAACTGTTCTTGGCCGAACTCGAAAGTCTTCGCGAAGCATCGCCAATTTTAACGATCCTTCGTTCGACTTCACTTCTCCGTGCTCGTTGCTGGCCACACAATAGTACGCTCCCGCATCGCTGTCTTTTCCGTTTTTTCCACTATTCACTTTCAGAAGAAACAGGGATCCCGTGTCGAGAACAATCCGGTGGCTGTTCACTTGCTCCTTATTCGTGATTACGGGCTGTCCATCCTTGTACCATGTGATTTTGGCGGTAGATGGCTTTGCACCACAGTTGAGGGTTGCTGGCGATCCCCTAGATACCACCACATCGATGGGATGTTCGATTATCACGGGAGCGAGATTTGAGGCATCTGAAA--------TTATATTCA
s cb4.chrX              8596149 381 + 21540570 TTACCTGCACAGTCCTAGGTCGCACTCGAAAATCTTCACGAAGCATCGCCAATCTCAACGATCCCTCATTCGATTTCACCTCTCCATGTTCATTGCTAGCCACGCAATAATATGCTCCAGCGTCACTATCCTTTCCATTCTTTCCACTGTTCActttcaacaaaaacaacGAGCCAGTATCCAGAACAATGCGATGACTGTTGACTTGCTCCTTATTCGTGATAACAGGTTGTCCGTCTTTGTACCATGTGATTTTGGCGGTCGATGGTTTTGCACCACAGTTTAGTGTGGCTGGAGATCCGCGGGATACAACCACATCGAGTGGATGCTCGATGATCACTGGAGCAAGATTTGAGGTATCTGTAAAATTTCggttataat--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   584791 373 -  4500979 TTACTTGAACAGTTCTAGGTCGTACTCTAAAATCTTCTCGAAGCATGGCTAATCTTAACGATCCTTCATTCGATTTCACTTCACCGTGCTCATTACTGGCCATACAGTAGTATGCTCCAGCATCACtgtcttttccgttttttccacTGTTCACTTTCAGAAGAAACAGTGATCCGGTGTCCAGTACTATCCGATGACTATTAACTTGCTCCTTATTCGTTATTACAGGTTGTCCGTCTTTGTACCAGGTGATTTTGGCGGATGATGGTTTTGCACCACAGTTGAGTGTTGCTGGAGAGCCTCTGGAGACAACGACATCAAGTGGGTGTTCGATTATCACAGGTGCAAGGTTtgaggaatctgaaa--------ttaaatt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5639204 374 + 20921866 TTACCTGAACAGTTCTTGGCCTGACGCGGAAATCTTCTCGGAGCATTGCTAATCTCAACGATCCTTCATTCGATTTCACTTCTCCATGTTCATTACTAGCGACACAGTAATATGCACCAGCATCACTATCCTTTCCGTTTTTCCCACTGTTCACTTTCAGTAGGAACAATGAGCCTGTGTCAAGCACAATTCTGTGGCTATTCACTTGCTCTTTGTTCGTGATAACGGGTTGTCCATCCTTGTACCATGTGATTTTAGCAGAAGCTGGTTTAGCTCCACAATTGAGGGTTGCTGGTGATCCTCTGGAGACAACAACGTCAAGCGGGTGCTCAATTATCACAGGTGCTAGGTTTGAAGCATCTGAAACAT-----ATACA----
i caeSp111.Scaffold630  I 40 C 0
s caePb3.Scfld02_0      1877996 374 +  4147112 TTACCTGAACAGTCCTTGGTCTGACACGAAAGTCTTCCCGAAGCATAGCCAATCTCAGCGAACCTTCATTCGATTTCACTTCTCCGTGCTCGTTACTGGCTACACAATAGTATGCTCCAGCATCACTATCTTTCCCGTTTTTCCCACTATTCACTTTCAATAAGAACAATGAACCAGTGTCGAGAACGATTCTATGACTGTTCACTTGCTCCTTGTTAGTGATAACGGGTTGTCCATCTTTGTACCATGTGATTTTTGCTGTGGCCGGTTTTGCACCACAATTGAGTGTTGCTGGTGATCCTCTGGATACGACAACATCAAGTGGGTGCTCGATTATTACAGGTGCAAGGTTTGAGGTAtctgaaagaa-----acaaa----
i caePb3.Scfld02_0      I 117 I 39
s caeJap4.Scaffold18194  713628 371 -   823664 GTACTTGTACAGTTCTCGGGCGCACCCTAAAGTCTTCCCGAAGCATTGCCAATCTCAGCGATCCTTCATTCGACTTCACCTCTCCGTGCTCATTGCTTGCCACGCAATAGTACGCACCGGCATCACTgtcttttccatttttcccacTGTTCACTTTGAGAAGGAACAGCGATCCAGTGTCCAGAACAATTCGATGACTATTCACTTGTTCCTTGTTGGTTATCACTGGTTGTCCATCCTTGTACCACGTGATTTTCGCCGATGACGGCTTTGCTCCACAGTTTAGAGTGGCCGGAGATCCTCGTGATACCACCACATCGAGCGGGTGTTCGATAATTACAGGGGCGAGGTTTGAGGGGTCTGAAG--------TTTCC----
i caeJap4.Scaffold18194 C 0 C 0

a score=-7107.000000
s ce10.chrX             3463867 25 + 17718866 AGATTTGAAAAGGTTCAAAACAACA-
s cb4.chrX              8596530 14 + 21540570 -----------tttttattttagga-
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   585164 14 -  4500979 -----------aattaaatatGGTG-
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  5639578 23 + 20921866 --Cgttaaaaaaactttctttgaaa-
i caeSp111.Scaffold630  C 0 I 4
s caeJap4.Scaffold18194  713999 17 -   823664 ---------ACTTTTGagtatagttt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1878370 39 +  4147112 I

a score=105638.000000
s ce10.chrX             3463892 261 + 17718866 --TCAT-----------TCCCCTGTTAGAA----TTTTTTTT-----ACTTTCCTCAT-----CTCCCATTCAT---------CTTATTTCCACATACATCAACAC-TTTGATTTTATCCATCTTG--ACAATGTGAATAAG-AAAGGAAACTTGTCCAAGTGCATTAAATCAATCTGACCGATCCGGCAC----GCG----CAATA---CTGTCACATCTGTAT------------TATGGTGTCGAAACGAACACC-TTCCCTCACCGATTTTTCAGTAGAGATGTGCGA-CACTATTGTCCTTGACGG---ACGGTAGGTAATAAA
s cb4.chrX              8596569 279 + 21540570 --ATTTAATTACGAAAACCCCTCAAACcaa----ttttcttc-----tccttc--cctGCCAGCCATTATTTCT-------CATGCCCTTGCCTATGCCTT------AGTGATTTTATCCGTCTTGACACAGTCTGAATAAG-AAAAGAAACGTGTCATAGTGCATTAAATCATTCTGACCGGTCCGGCACGCGTGCGCGCACGATCTCACTGTCACAGTTGGGTAGG-------AGAAACGCGATGAAACGAACACCTTTcgcaaat---ttttattccaag----------GATT-CTGTCCTTGACGAA--GAGAAAGGTAATAAA
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   585199 276 -  4500979 --TTCT-----TGTGAACCCAAGGTGTCAa----ttttctcctattatttttc--cctattatttttcttttcttcccatccacacattttccaatatatcacaaaaagtgattttatCCGTCTTG--ACAATctaaataag-aaaagaaacgtGTCAAAGTGCATTAAATCAATCTGACCGGTCCGGCAC----GCGCGCGCGATT---CTGTCACAGCTGTAT------------TATGGCGATGAAATGAACACC-TTCTCTCCT---CTTTCTGGTAGG-----GTGA-GATT-TCGTCCTTG-------GAAGGAGGTAATAAA
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  5639605 251 + 20921866 --cTTT-----------TCCCTATTtacat----ttctctct-----tttttcgtcctTCTCATCCCCATTTCA-----------------CCAATATATCACCAA-CGTGATTTTATCCGTCTTG--ACAATCTGACTAAGAAAAGGAAACGTGTCAAAGTGCATTAAATCAATCTAACCGGTCCGGCAC----GCGCACGCGTTA---CTGTCACAGCTGTAT------------TATGGCGATGAAACGAACAccttttcttcag---ttttttactAGT-----GCGA-GATG-TTGTCCTTG-------AGAGTAGGTAATAAA
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      1878409 245 +  4147112 --TTCT-----------CCCCGGGTGGCATTacattctttcc-----ttttttgtcct-----TTCCCATTC-------------------TCAATATATAACCAA-CGTGATTTTATCCGTCTTG--ACAATGTGAATAAG-AAAGGAAACGTGTCAGAGTGCATTAAATCAATCTGACCGGTCCGGCAC----GCG--CGCGATT---CTGTCACAGCTGTAT------------CAAGGCGATGAAACGAACacctttccttttc---ttttttggtagt-----GCGA-CACG-TTGTCCTTG-------AAGGTAAGTAATAAA
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18194  714016 261 -   823664 tttttt-----------tgtttggttccCC----TTTTGCCT-----ATTCTCTCCat----tcttttatttta--------ataCCGTCCCTTCTACCATTCTGA-CGTGATTTTATCCGTCTTG--ACAATCTGACTAAG-AAGGAAAACGTGACACAGTGCATTAAATCAAACTGGCCG-CCCGGCAC----GCG----CAATT---CTGCCACATCTGCAGTGTCAGCATCAGTATGGTGATGAAACGAACAC--------------CTTTTTCGTGGG-----GCGACGACA-GTGTCCTTGGATGGTCGGGTGGGGTAATAAA
i caeJap4.Scaffold18194 C 0 I 953

a score=28479.000000
s ce10.chrX             3464153 398 + 17718866  
s cb4.chrX              8596848 408 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   585475 509 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5639856 481 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1878654 479 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  714277 953 -   823664 I

a score=47975.000000
s ce10.chrX             3464551 118 + 17718866 TAACCTTTCAACAATCTAGCGTG-CCAGTGTCAAAATGTGCGCACGCGAGTAAACTATCCATGAACCAATGTATTGTACTCTGGCTACAATTTAATGGCCGTGTTAACCTTCAAAATAT
s cb4.chrX              8597256  68 + 21540570 TCACCTTT------TCCAACGAA--TAACCTCAAA-------------AATAAACTATTCATGAACCAA------------------------------AGGAATAGCCTTCAAAAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   585984 103 -  4500979 TACTCAAT------TCTAACCTG--GCATGTCAAAATGT------GAGAGTAAACTATCCATGAACCAATGTTTTGTACTTT--CTACAGTCTAATGGTCGTGTTAACCTTCAAAATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5640337  97 + 20921866 --------------TTCAACCTGGCGCGTGTCAAAATGT------GAGAGTAAACTATCCATGAACCAATGTATTGTATTCT--CTACAATTTAATAGGCGTGTTAACCTTCAGAATAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1879133 103 +  4147112 TCAACCCA------TTCAACTTG--GCGTGTCAAAATGT------GCGAGTAAACTATCCATGAACCAATGCATTGTACTTT--CAACAATTTAATAGACGTGTTAACCTTCAAAACAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  715230 101 -   823664 --------TATCCCTTCAACCTG--GCGTGTCAAATT--------GCGAGTAAACTATCCATGAACAAATGCATTGTCGTTGTGGAACAATTTAATGGCCGAGTTAACCTTCAGAACGT
i caeJap4.Scaffold18194 I 953 I 616

a score=-4160.000000
s ce10.chrX             3464669 4 + 17718866 TA--TA
s cb4.chrX              8597324 2 + 21540570 TA----
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   586087 4 -  4500979 TCTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5640434 4 + 20921866 CC--CA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1879236 4 +  4147112 TC--CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  715331 616 -   823664 I

a score=-4500.000000
s ce10.chrX             3464673 33 + 17718866 --------CTACGCTGCCTGCCCGCC----TT----TTCATCCATAGGC----
s caeRem4.Crem_Contig0   586091 40 -  4500979 -------------TTGTCGTTTTTCCCCCGTTGGAACCTATCCGTTggtgtga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5640438 45 + 20921866 CAACCACCGTACTCTTTGAAATTGGC----ATGAAATCTGTCTATTGGt----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1879240 33 +  4147112 CCA-------ACGTTTTCGAATTCCC----TTGAAATCT-----TTGGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  715331 616 -   823664 I
e cb4.chrX              8597326 22 + 21540570 I

a score=70983.000000
s ce10.chrX             3464706 251 + 17718866 AAGACAAAACCAAAGAGCTGTGAAGATGTACACATATCTCATCCTGTCAACACCCAATTTCACAATTC-----GCCCGTCATT-----------CTTTCGCAACA--CATTGGTGTT----GAAAGCTT-------------------CTG---CTAAAAAGCAGGCTGTCTTTCTAAAACATGAG-ATGCAACTGAATATTTTGGACAGCGCCAACAGCTCATTAATAACCTA----CTAGTCTCTGGGGAGGGATTTCAA----------------ATAG-CT-----------------TCTCATCTTCTATCAACCGCATGCTAATGATT------
s cb4.chrX              8597348 219 + 21540570 -------------AACACAAAG--------CAGA----GCTTCCTGTCAACACTCAATTTCACAATACACCATCCTTGTCATTCATGCTTCTGCCTTTCGCAACA----ATGTTGTT----GAAAGCTT---TTTCCT----------CTC---CATAG------------CTGTTAAAA--------------------------TGAGCGCCAACAGCTCATTAATAACCAGTGGACTAGTCTCCAGAGG---ATTAC---------------CCAATGTATTATCG----------------CATCTCCAACCAACCTTATGCTAATTATCGACTTT
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   586131 285 -  4500979 ------aaaacaaaacacaaagaGC-----TAGATGATGCATCTTGTCAGCACCCAATTTCACAATTC-----CCTCGTCATT-----------CTTTCGCAACATTCGGTGGTGTT----GAAAGCTTGACGATCCTACTTTGGCAACTC---CTT--------------CTGGTAAAACATGAG-AAGCGACAGAAT-TGATGGTGGGCGCCAACAGCTCATTAATAACCAGCGG-CTAGTCTCTGGAGA---ATTTCAAAAGCGTTGCAAGTCAAATAT-CCATCGCGCACTAATCTACACTCATCTCCAACCAACCTTATGCTAATGATTGACTtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5640483 273 + 20921866 -gggaaaaacaaaagcaCAAAGAAGCA---TTGATACATCTTCTTGTCATCACCCAATTTCACAATTC--CCTCCTCGTCATTCTT--------CTTTCGCAACA-TTGTTGGTGTTGAAAGAAAGCTT-------------------CAACAGCTT--------------CTCCTAAAACATGAG-AAGCGACAGAAT-TCCGGGTGGGCGCCAACAGCTCATTAATAACCAGTGG-TCAGTCTCTGGAGA---ATTTCAAAAGCATAGCT------AGAT-CTATCCGGCATTCATCTACACTCATATCCATCCAACCTTATGCTAATGATT------
i caeSp111.Scaffold630  C 0 I 608
s caePb3.Scfld02_0      1879273 265 +  4147112 -GTG-AAAACAAAGGCTCAACAAAGCGGT-TGGATGATATGTCTTGTCATCACCCAATTTCACAATTC-----CCTCGTCATTCTT--------CTTTCGCAACA-TTGGTGGTGTT----GAAAGCTT-------------------CTA---CTT--------------TTGCTAAAACATGAGAAAGCGACAGAAT-TCGGGGTGGGCGCCAACAGCTCATTAATAACCAGCGG-CTAGTCTCtggaga---atttcaaaagcaTTGCT------ATAT-CCATCCCGCACTCATCTACACTCATCTCCAACCAACCTTATGCTAATGATT------
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194  715331 616 -   823664 I

a score=-7158.000000
s ce10.chrX             3464957  69 + 17718866 --------------------------------------CTCAATTTTACGGATATTCGCATGCATCTTAAAACTGTGCTAAAATGTTTAAA--------TGACCC------AGGTTGGGGC
s cb4.chrX              8597567  70 + 21540570 ----CTAAAAAT-GCCGGAAAGAGA------------------------------TCTCTTGCATATTGAAAC--AGCAGCCCCTCATGAATCCATTTTTGAGAA--------------GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   586416 108 -  4500979 ----ctaaaa-----tgaaaagagaatggAGAAAGCTGATGAAGACTCA--AAGTTTCCTTGCATATTGAAAT--AGCTAGAGTCTATGAATTTGTTTTAAAGGACATGTGAGCTTGTGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1879540  93 +  4147112 CTCTCCAAAAggagatgaaatgaaa-------------atgatgccTAAGGAAGTTGCTTTGCATATTGAAAT--AGCTGGACACTATGCATTC-----TGAGCA------AGGTTG--GA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194  715331 616 -   823664 I
e caeSp111.Scaffold630  5640756 608 + 20921866 I

a score=-7960.000000
s ce10.chrX             3465026 17 + 17718866 AATTTA--------TCACATTGAAT---------
s cb4.chrX              8597637 14 + 21540570 CACCAA-----------GGTTAGAT---------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   586524 25 -  4500979 CACTGACAGAACAATCTGCTTCATT---------
i caeRem4.Crem_Contig0  C 0 I 22
s caePb3.Scfld02_0      1879633 18 +  4147112 AAACAA-------ATGGATTTCGAC---------
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold18194  715947 17 -   823664 -----------------AATTTGTCACTTTGCCA
i caeJap4.Scaffold18194 I 616 C 0
e caeSp111.Scaffold630  5640756 608 + 20921866 I

a score=490867.000000
s ce10.chrX             3465043 1460 + 17718866  
s cb4.chrX              8597661 1345 + 21540570  
i cb4.chrX              I 10 I 481
s caeRem4.Crem_Contig0   586571 1459 -  4500979  
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold630  5641364 1457 + 20921866  
i caeSp111.Scaffold630  I 608 C 0
s caePb3.Scfld02_0      1879693 1445 +  4147112  
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18194  715964 1339 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1526.000000
s ce10.chrX             3466503 4 + 17718866 TGAA-
s caeRem4.Crem_Contig0   588030 4 -  4500979 TGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5642821 4 + 20921866 TGAA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1881138 4 +  4147112 TGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  717303 4 -   823664 -gaaa
i caeJap4.Scaffold18194 C 0 I 1777
e cb4.chrX              8599006 481 + 21540570 I

a score=-63990.000000
s ce10.chrX             3466507 806 + 17718866  
s caeRem4.Crem_Contig0   588034 499 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5642825 449 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1881142 506 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  717307 1777 -   823664 I
e cb4.chrX              8599006 481 + 21540570 I

a score=4024.000000
s ce10.chrX             3467313 18 + 17718866 CAATAAGGTC-GTCAGAAA
s cb4.chrX              8599487 18 + 21540570 CAATAAGGTT-CTTATGAA
i cb4.chrX              I 481 C 0
s caeRem4.Crem_Contig0   588536 18 -  4500979 TAAGGGCGGT-TTTGCGCA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5643274 18 + 20921866 CAATAAGGTC-ATTATAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1881648 19 +  4147112 CCATAAGGTCTATTATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  717307 1777 -   823664 I

a score=201534.000000
s ce10.chrX             3467331 581 + 17718866  
s cb4.chrX              8599505 582 + 21540570  
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   588554 577 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold630  5643292 579 + 20921866  
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      1881667 567 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  719084 529 -   823664  
i caeJap4.Scaffold18194 I 1777 C 0

a score=-2527.000000
s ce10.chrX             3467912 16 + 17718866 TCTTT-TTCCGAAA-AGC
s cb4.chrX              8600105 13 + 21540570 ttttt-ttcca----tcc
i cb4.chrX              I 18 I 3
s caeSp111.Scaffold630  5643873 13 + 20921866 TCTTT-TTTCG----CGC
i caeSp111.Scaffold630  I 2 I 40
s caePb3.Scfld02_0      1882236 14 +  4147112 TCTTTATTTCG----CGC
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194  719613  7 -   823664 -----------gaagaac
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   589131 47 -  4500979 I

a score=-4644.000000
s ce10.chrX             3467928 27 + 17718866 AAA---AAGTTCAGAAGAAAGATGGCACAA
s cb4.chrX              8600121  9 + 21540570 -------------------tgatgtct--t
i cb4.chrX              I 3 I 6
s caePb3.Scfld02_0      1882250 22 +  4147112 --------GCTTCCCACAAAGCTGTCTTGT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18194  719620 30 -   823664 aaatgcaaatttatatgaaaattggaagaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5643886 40 + 20921866 I
e caeRem4.Crem_Contig0   589131 47 -  4500979 I

a score=-1560.000000
s ce10.chrX             3467955 12 + 17718866 TAACCAAAAA---GA
s cb4.chrX              8600136 13 + 21540570 --cctaaGAAACCAA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   589178 12 -  4500979 tatccagaaa---aa
i caeRem4.Crem_Contig0  I 47 C 0
s caePb3.Scfld02_0      1882279 10 +  4147112 TCTTCAGGGG-----
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18194  719650  7 -   823664 -----aaaaa---ga
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5643886 40 + 20921866 I

a score=53253.000000
s ce10.chrX             3467967 204 + 17718866 --AAAAAAAAAG-------------AAGCAAAA-AATGCAAAGAAAAGTG--TGATGGGATGGGAAAGTCTAC-CAG--GGAGAATA------------------------------------GAA----------TTGTGGTC---CGCCGCAATTCGTCATGGGGTCCACT------GGACACCTGCTCGACCGG-------------ACGACGG-GTCGATGGCGTGAAAAACGTGGATTG-GAATGGG--GGACGTCAA--------------AGAGGGGCAC---------GAAAGTGTGCGCCAAATGATTTTT
s cb4.chrX              8600149 219 + 21540570 ---CAAGAAAtg-------------cgaagaag------aaaaaagcgtC--TGACG----GGAAATGTCTAT-TAGAAGGACATCT-------------------------------------------------CTGTGGTCCGGCGCCGCAATTCATAAAGA----CGTGGGGGATGGACACCTGCTCGACAAGAA----GGGAGAAACTGGGG-GTCGATGGTGTGAAAAATGAGGGTTTCAAATGGGGTAAATGAGAATGGCAGA-----TGAGGGGAGCGA---------GCGGGTGTGCGCCAAATGATTTCT
i cb4.chrX              C 0 I 1169
s caeRem4.Crem_Contig0   589190 220 -  4500979 ---aaagtggcg-------------caaagaaaaaatgcaaagaaaCGTC--TGATGAGATGGGAATGTCAAC-CAGAAGTGCAATC------------------------------------AAA----------TTGTGGTC---CGCCACAATTCGTCAAAG----CACA------GGACACCTGCTCGACCGG-------------ACGATGG-GTCGATGgtgtgaaaaatgaggattg-gAATGAG--AAATGGAAACGGCACT-----GAATGAAATCAAATGTGGGACGCCGTGGTGCGCCAAATAGATTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5643926 221 + 20921866 --ACaaaaaaaG-------------CGggaaaa-aatgcaaagaaaCGTCTGTGATGGGATGGGAATGTCTTG-CAGAAGGTCAATCC--------------------------------ACAAAA----------TTGTGGTC---CGCCGCAATTCGTCATGA----CAAG------AGACACCTGCTCGATTGGTC------TAAGACCGATGGCGCTGATGGCGTGAAAAACGAGGTTTC-GAATGGG--AGATGGGAATGGCAGA------AAGAGGGGC-----------GCTAGTGTGCGCCAAatga-ttct
i caeSp111.Scaffold630  I 40 C 0
s caePb3.Scfld02_0      1882289 212 +  4147112 --AAAAGAGATA-------------Ttgcaaaa-aatgcaaagaaaCGTC--TGATGGGATGGGAATGTCAAACCAGAAGGTCAATCC--------------------------------ACAAAA----------TTGTGGTC---CGCCGCAATTCGTCTTGA----CTGG------AGACACCTGCTCTGCCGGACGAGGAGGAAGAACCAAGGCGCCGATGGTGTGAAAAACGAGGATCA-GAATGAG-TAAATGAGAA-------------------AGC-----------ACTA---TGCGCCaaatgatttct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  719657 258 -   823664 aagaaagaaaggatggaagcttagccaaaaaaa-aatcgctaaaaatgtG--TG-TATAATGGGAAAGTCGGA-TGA--GGACCACACCAATCGGCGGTCGTTGTCTTCTGCGGGGATGGACGGAATTACGTCGTCTTGTGGTC---CGCCGCAATCCG----------TCTG------GGCCACCTGCTTGACCGG-------------ACAACCC-GTTG--GGTGTGAAAAATGAG------CAGCGAG--AGATGTTGA-AGCAGACATCGAAACAGGGGC-----------GTAAGTGTGCGCCAAATGATTTCG
i caeJap4.Scaffold18194 C 0 C 0

a score=-4976.000000
s ce10.chrX             3468171 13 + 17718866 TCCCCCTCCCATC
s caeRem4.Crem_Contig0   589410 10 -  4500979 ---GACCTCTATT
i caeRem4.Crem_Contig0  C 0 I 324
s caeSp111.Scaffold630  5644147  8 + 20921866 -----tcttcatc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1882501  5 +  4147112 -----tcttt---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  719915  4 -   823664 ----ACCC-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8600368 1169 + 21540570 I

a score=-4082.000000
s ce10.chrX             3468184 173 + 17718866 TTTTCTCAATTCCGCGCTCCTTTGCCCCGCCAAGAAGTGGGTCGCCGGCGGAGCAAGTGGTCAGTGGCAGACGACGGTGAGCAAAAGTGGGTTATGCAAATATTC---------CTGCTCTC----------TCGGTGATATTGAATCTCTCTTTTT--AAATCCAAAGAAA--------CATGAGGTGCGTGAGAAATTAT
s caeSp111.Scaffold630  5644155 167 + 20921866 ------cgaCTGCGCGGT----------GCCAGATTGTGGGTC----AAAAAGCGAGTGGTCAG-------AGACGGTGAGCTTTAGTGGGTTATGCAAATATCCGAAAAactgcttttttcttcttgccGAACTTTGATATTGATCTCAAATCCCCCGGAAACTTGAGAAA--------GGTGAGTTGCGTGTGAGCATAT
i caeSp111.Scaffold630  C 0 I 204
s caePb3.Scfld02_0      1882506 127 +  4147112 ---------ttgcgcGGG------------CAAATTGTGGGTC----GAGGAGCCATTGGTCAG-------AGTCAGTGAGCTCC-GTGGGTTATGCAAATAGGCGAAAAACGGGGATTTTC----------ACACTAGATCTCATTTCAATTCTAC--AAATCCGgataaa------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  719919 115 -   823664 -------------------------------GGATTGTGG--C-------GAGCAAATGACCAACTGACG-AAATAGTGGGTGCC---GGGTTATGCAAATAGTTGAAAA----CTGCTTTG----------GC-------------------------GAAACGGAAGAAAAAGCCGAAAGGGGGCTGCGGAATATC----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8600368 1169 + 21540570 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-881.000000
s ce10.chrX             3468357 38 + 17718866 GATATGGAAGTTTTTAATACATGCACGTATAtttttcg
s caePb3.Scfld02_0      1882633 32 +  4147112 -aaacgaaatatgTTGATGTGCGTGTGTGAAT-----G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720034 23 -   823664 ---------------GATCTGGGCGCATATACCTCTAG
i caeJap4.Scaffold18194 C 0 I 175
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-2050.000000
s ce10.chrX             3468395 241 + 17718866 gcaatttcaaact-----ttcagacaatttttgagcactttttcaattgtttcaaatagagaacaagttattttcagataaaaaattaattttccattttttgtaactaaatttttatttaaaaaaaaactacttcggggaacatgccagactggctcattttgtagaattgccAGCCTGCATTTGCCGCGCACCTTTGGCACAAATgttaaagtagcgcggtagggagattggtgaaaactactc
s caePb3.Scfld02_0      1882665 137 +  4147112 ACCCTTGCAAACTAGGAATTCAGG-AATTTGAAAGT----------Tgggtttgaagaaaaactga-----------ataaaaaatcagc------TTTGATAtacattattttttacttgaaaata-----------------------------ttattct-------------cCTACG---------------------------TAACTCAATACGGGAGTGAGA------------ATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  720057 175 -   823664 I
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=209.000000
s ce10.chrX             3468636 45 + 17718866 ctatggtgctaaaataactaaatatctttgta---aaatatttcaaaa
s caePb3.Scfld02_0      1882802 48 +  4147112 TTTTGATGCTCACAAGATGAAATTTGTATCTATTGGAATAATCctaac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720232 44 -   823664 ctgtggc-ctagaaaatacAAATTCTTCTACG---AGTAAATTCAAAA
i caeJap4.Scaffold18194 I 175 I 41
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-675.000000
s ce10.chrX             3468681 59 + 17718866 attttcaaaggtttttgctgactgtcaaaaagtggcaaatactgagtttttgcaTTTTT
s caePb3.Scfld02_0      1882850 27 +  4147112 at----aaaattttttg--------------------aatacaaagtATTC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  720276 41 -   823664 I
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-1005.000000
s ce10.chrX             3468740 30 + 17718866 -TAAAATGAAAAATT---AGCACTGTCGCGTTTT
s caePb3.Scfld02_0      1882877 15 +  4147112 ------TGAA-------------TGCCGCTTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720317 31 -   823664 aaaaattgaaaattctcgagccgtgtcgcgt---
i caeJap4.Scaffold18194 I 41 C 0
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-1884.000000
s ce10.chrX             3468770 200 + 17718866 CAAATCCCCACAGAGttttaatattaaaatttgaattttttttttGATTGACAACGTCCAAAAAAGTAACAAAAACTGAATACACACGTTTGTAAAAATGAAAAAATTCAACAAAAAAAAGTTTTAAAAAGTTCAACTGTGTATGATATTTAGTCATGCGCCACTTTTAAACGATTTTATACCTTTCTAGAAGATACTAA
s caeJap4.Scaffold18194  720348 103 -   823664 cgcgtcgccaaaaaaattgaat------------gtattttttttgat----------------------aaaaactg-----------------AGATGAGAAAAACACGCCAGTGCACGTATCATAA--------------------------------------TAAACCAGCAAACACATGTCTGGGG--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1882892   0 +  4147112 C
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I
e caeRem4.Crem_Contig0   589420 324 -  4500979 I

a score=-1839.000000
s ce10.chrX             3468970 45 + 17718866 GAAAAATGCTTTAAAAAACAAGACAGAACATTTTATTCACTAATA
s caeRem4.Crem_Contig0   589744 38 -  4500979 gaaaaat----tagaatacaAAATGTCGCTTTGCAT---CTTCTT
i caeRem4.Crem_Contig0  I 324 C 0
s caeJap4.Scaffold18194  720451 22 -   823664 --------------CAGAAACGAGCGCACAttttat---------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1882892  0 +  4147112 C
e cb4.chrX              8600368 1169 + 21540570 I
e caeSp111.Scaffold630  5644322 204 + 20921866 I

a score=3308.000000
s ce10.chrX             3469015 7 + 17718866 CACTACA
s caeRem4.Crem_Contig0   589782 7 -  4500979 CACAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5644526 7 + 20921866 CACAACA
i caeSp111.Scaffold630  I 204 C 0
s caePb3.Scfld02_0      1882892 7 +  4147112 CACAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720473 4 -   823664 ---tata
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8600368 1169 + 21540570 I

a score=113460.000000
s ce10.chrX             3469022 426 + 17718866  
s cb4.chrX              8601537 442 + 21540570  
i cb4.chrX              I 1169 I 4
s caeRem4.Crem_Contig0   589789 459 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold630  5644533 433 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1882899 425 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720477 402 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-63.000000
s ce10.chrX             3469448 12 + 17718866 AAGAATAAGAGG
s caeJap4.Scaffold18194  720879  9 -   823664 CAGAATACG---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1883324  0 +  4147112 C
e cb4.chrX              8601979  4 + 21540570 I
e caeSp111.Scaffold630  5644966  0 + 20921866 C
e caeRem4.Crem_Contig0   590248 17 -  4500979 I

a score=201118.000000
s ce10.chrX             3469460 408 + 17718866  
s cb4.chrX              8601983 410 + 21540570  
i cb4.chrX              I 4 I 170
s caeRem4.Crem_Contig0   590265 405 -  4500979  
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold630  5644966 400 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1883324 399 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  720888 389 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-52984.000000
s ce10.chrX             3469868 166 + 17718866 -AAAAGTTAAAACTCATAT-----TTTACTTTCAAATAAAAAAATTCCAGTGCTTACAAATGTTGAATCAAGCGGAAAATTTAACATACATATTCtaaaaatttgatatt--------ttaattattaatattattaaattaa------------------------------------------------------------------------------------CTTG---------------------------TATTGACTCAATACAGAATATCA---------------AACATAGCCA--
s caeRem4.Crem_Contig0   590670  53 -  4500979 ------------------------TTTAGTT----------AGGTTTTGTAGCGTAC-------------------GAGCTT-------------------------------------------------------------------------------------------------------------------------------------------------CTTG---------------------------ACTTAA---AGAATAGAGTATGG---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5645367  55 + 20921866 -----------------------------CT----------AGGTTTTGTTGCATAT-------------------AGTTCTGac----------------------------------------------------------------------------------------------------------------------------------------------tttg---------------------------aattaa---aaataagagGTTGA---------------------GCTT--
i caeSp111.Scaffold630  I 1 I 8
s caePb3.Scfld02_0      1883723 223 +  4147112 ------------------------------------------agcTCTGTTGTATAT-------------------AAGCTTGACTTGAAGAATGAGAGAGTATGAATCT--------TCAGTtataagaaagaaagagacca-----------tgaaaaacaatttcctttttctattttcttcccGAAGCAGTTCATAACGGAAAGATTGTGAGGTCTGTGTAGGTTTGCAAGTCTTTTCAGGAAGCTCGAGAAGtaagtaa---aaataaaagaaaaagggggGACACGACAAAACAATGCTT--
i caePb3.Scfld02_0      C 0 I 117
s caeJap4.Scaffold18194  721277 206 -   823664 aaaaagtaaaaaaatagatacataaatagtgacaaaaaaaCAGACTCCGCTGAATGGAAAAGA-------------AAGCTCCACTCGGATAAcaatttcccatttttctcgTAGAAATCCATaacaaaaaagggaaaagtaaaagaaaaaaggtgTGAAACAAAGTGTATTTTCAAAGCTGT--------------------------------------------TTCG------------------------------TAA---GCAATCGaatacga------------cgctccaatgtttcG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8602393 170 + 21540570 I

a score=-20960.000000
s ce10.chrX             3470034 120 + 17718866 CACTCCA--------ACTTGGGA-----TTTCCACTAAATTTCAAAGAATTTCAAAAAGAA---ATTTCCAATTTCCTACATGCAAACGGATGTTTCTGGGACTTTCAAGTAGA------------------------AACTTTTTTTTTGCAAATTTTG
s caeRem4.Crem_Contig0   590723  20 -  4500979 -------------------------------------GTCTTTAG------TCATATAGA-------------------------------------------------------------------------------------------AAG------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1884063 121 +  4147112 AACTC----------GTTTAGTA-----TTTTGTATTGGTTCTAG------TGAATTAGAA-------TCTGGTTCCGACGTA-----------TTCTGAGATTTTTAAGCTGAATAAAATAATAACAAAGAGGTCCTAACCATAGTTATGAAGTATTTG
i caePb3.Scfld02_0      I 117 C 0
s caeJap4.Scaffold18194  721483 111 -   823664 CACTGCGCCTTGTTTACACAGGAGTCGTTTTTATCGAAACTAtcg------ataattaaaaaaaatttcgaactTCCATCAAACAG--------TTATTGTattttctaatcga------------------------aaattatttcg-----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8602393 170 + 21540570 I
e caeSp111.Scaffold630  5645422   8 + 20921866 I

a score=-4253.000000
s ce10.chrX             3470154 48 + 17718866 AAAGAGAATAGTGCAGAAAACAATGTCTTTTTTGAAATTTCCAATTTT
s caeRem4.Crem_Contig0   590743 38 -  4500979 --GAAGACGGCCatggaaaacaattt---tct-----ttttccatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5645430 43 + 20921866 aaatagaaaaatatgaaaaacaatttctcttt-----tttctcatttt
i caeSp111.Scaffold630  I 8 C 0
s caePb3.Scfld02_0      1884184 29 +  4147112 AGGTA-AAACTCATAGCAAGGAagtt------------------ttag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  721594 30 -   823664 ------------------aagtgtttttttttcaaaattgcgaaattt
i caeJap4.Scaffold18194 C 0 I 80
e cb4.chrX              8602393 170 + 21540570 I

a score=-13413.000000
s ce10.chrX             3470202 119 + 17718866 CT----------TTCCTCTCACAGTTAATAACGTGGGG--------GCATGTGA-AGCTTGAGAATCTTGAGAAAGAGCTCAAAAAGCAAGACGTC--------TTGGTCTTGGAAGGA---------AATAATAGTTGGCCAAGGGATGGTGGG
s caeRem4.Crem_Contig0   590781 117 -  4500979 ct--------cctcGTCAACCCAGTTCATAACGTAAGACTCAAGAAGTTGATGAAAGCTTGAGTCTTTTGAAAAACCaggaaaaactcaaagaaCCAAAAAGCTTAGGAATCATAAAGA----------ATGCTA--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5645473 114 + 20921866 tttggcAGTTCATAACTGAAAGATATTGCGGTTTGGAA---AGAAGGTTGGAGA--GCTCGGAAGGCTCAAGAAGTaagtaagaaaaagaaataatagaaaatggaggcagtggaagaa------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1884213 126 +  4147112 tttgaaaaaatcaagtccACAGAGAATGTCCTGTAGGA---AAACGGTTTTTGA-------------TTAAGAAAGAAGTATATTATCAAACTATTTTAGAACATGTGCCACGTAAGGAGTTTTTCTTGATACTG-------------TATTTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  721624  80 -   823664 I
e cb4.chrX              8602393 170 + 21540570 I

a score=-33233.000000
s ce10.chrX             3470321 158 + 17718866 ACAAAAAGAAACAAAACATAGT--------------------------GGCTTTCAGGTTTTTAGAGACAAC-TAA--GTATTGGATT------------CTAAAT------GTTTTGGGAAACAATCAAAAATGAATTCTGTGTGGGTTGGCATTGTT---GTTTATAAG--------------------------------GTTTTGTGTACGAA---GAATAAGGGGTAAAATGGAAATG---------
s caeRem4.Crem_Contig0   590898 135 -  4500979 -------------AGAAACTGT-------------ATTAATTTTATAATATTCtt-------tgaaaaccta------aaaactaACT------------ATGAAT-------CTTAGAgcaaaaaaagacaacaaattCGTT----GTTTGTAT--TTGGGGCGAAGAAA----------------------------------AGTGGGAGCTAA----------GGGAACTTGCGAATGG---------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  5645587 127 + 20921866 -------------aacaatagT--------------------------CGCTTTCAGGTTTTTAGAGACTTC------CTCTcgactt------------ttcaat-------atttggaaaacaatcaaaacacA-----------TTTGGTGT--TT---GCGTAAAAA----------------------------------GTTGTGTACAAA--ATGACACAGCGAACTGCCGAACTG---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1884339 216 +  4147112 TTATCAACCTTCTAACAACAGTTATAAGGTTGATAATTCAATCTTTGACGATTTCAA-----CAAAAGCATCATAA--ATCATGGATTGCA---------GTCAATTAAGGTGATTGaagttaaaatgaaaaaaaagtgaggt----tttggaaa--tt---gcaaaaaaaaactccaacggttttcaaaatttggtggGCAACTATTGTGTACGAA--TGGCTAAGAAGAACTGCCGAACTA---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  721704 138 -   823664 -------------ACCAACAGT------------------------Aacagtttc-------aaaaaacaaa-tggTTTTATCGGATTTCCGTTGCCTATTTCAAC-------CTTT-------------------TTTGGTT----GCcgattt--tg---gaagaaaaa----------------------------------aaagtaaaacaattttcactaGGATAAACTTCGAATGTATGTATATA
i caeJap4.Scaffold18194 I 80 C 0
e cb4.chrX              8602393 170 + 21540570 I

a score=23109.000000
s ce10.chrX             3470479 301 + 17718866 ACG------CTTCTG------CGGACCCATCGCACATTTAGCCCCAACGGACAT--------------------------ACGTTCATTTATCAAATGG--CTAAGTGCGCCTCGACTTCATGTCACCAAGTCATGCAACG--CCGCACCACCCAATGAG------------------AAA--------TAACTC-GGACGAGTTTTCTGGC---TGGCGAATTTTGA---------------CCATGAGACAGATTTTTGAAAAATTGAGTAACGTAGAGGGC---GGCGA-ACGGCGAGAGTAATCACTAATGGAGGTGGGGGGGGGGGGGGCAGGATGAGGTGA------GAACAGACCACTAAAAGCTTTTTATCTCTGTTTAATTGGATCTTC---------------
s cb4.chrX              8602563 258 + 21540570 -------ATGTTTCG---GCCCACATATTGTGCACTTTTTCGCCCCACAGACAT--------------------------ACGTTCATTTATCAAATGGGCATAAGTGCG------CTTTATGTCGTCAAGTCATGCAACTAACCCCT---CCCA--GCAGCCCACCCATCCAGAAACGAAGAACACAGAAACTT-GG--GGATTTAATGGTGTGTTGAG-AGA------------------------AGACGAA------AAATAACGGA----ATAAATATC---GGAAA-ACAT------TCTTCACTAATGG-------------------AAATTGAATTA-------GAACATCATCc----atttttgcc---------------gttttt---------------
i cb4.chrX              I 170 I 20
s caeRem4.Crem_Contig0   591040 267 -  4500979 -------ATCTTCTG---GCTCGGACCCATAGCACATTTTGCCCCCACGGACAT--------------------------ACGTTCATTTATCAAATGG--CTAAGTGCGTTTCGCCTTCATGTCACCAAGTCATGCAACC--CGCCA---CCCA--GCG------------------AAAGAACACA-AAACTT-GAACGGGTTTAATGAGGTGTTGTGTAGATCG---------------------AGATAAG------AAAAGAGGGAGACGGTAAATTTT---TGTAT-CTGTC-----TAATCACTAATGG-GTTGACGGTA--------AAATGGAGGTGT------GAACGTAACACTAAaagctttttc---------------attttt---------------
i caeRem4.Crem_Contig0  I 7 I 11
s caeSp111.Scaffold630  5645714 281 + 20921866 ATGCTTCATCTTCTGGCCCCCCGGACCCATCGCACATTTTGCCCCCACGGACAT--------------------------ACGTTCATTTATCAAATGGG-CTAAGTGCGTTTCGACTTCATGTCACCAAGTCATGCAACC--CTTCG---CCCGATGCA------------------AAAGAACTGA-GAACTT-GAACGGGTTTAATGTGGTGTGGTGAATATTG-----------------tcacagaa---------gaaaagaggaaaatgtagatttt---taaagaaaaag-----aagccattaatgaagatgag------------aaagtgagaaaata----gaaagtaGTTTGGAGACCTGATAA---------------AACTTG---------------
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      1884555 289 +  4147112 ACGCTTCATCTTGTG--CCCCCGGACCCATCGCACATTTTGCCCCCACGGACAT--------------------------ACGTTCATTTATCAAATGGG-CTAAGTGCGTTTCGACTTCATGTCACCAAGTCATGCAACC--CCCCGCCACCCAATGCg------------------aaagaacaca-aaacttgGAACGGGTTTAATGGAGTGTCGTGAATATTG-----------------CTTGAGGAAAC------GAAAGTGGGAATAGATGGATTTT---TGGCG-CCGGT-----AAATCATTAATGGAGGTGAT------------AGATGGATAGGACGGTGTGAACAGAATCCTAAAAACTGATTA---------------GACTTG---------------
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold18194  721842 287 -   823664 ----------------------------AACACACAGTGGACCCACCCATGCATTATCTAAGACTTaagcgaagaaaaaaaagttaattcaTCAAGCGC--CAAAGCGTA----------ATGTCAGAa----------------------tttgaagaa------------------gaagaaaaaa-ggtaTT-GAGGGTGTCGGATA---TGTCATAAATATTGCGGCGCaagagtgagtgagtgagacagc------agaaaaagaaaatagtgGGTTTTGCATGAAA-TCGGG-----TAATCGCTAATGGAGGCCGGGCCA--------GGCCGTCGGTGA------GAACCGAACGCTAAAAGGTTTTTC---------------ATCTTCATTTAATTAGGCTCC
i caeJap4.Scaffold18194 C 0 I 11

a score=-2812.000000
s ce10.chrX             3470780 13 + 17718866 TAGGGCTACGAGA-
s cb4.chrX              8602841 13 + 21540570 aaaaactactttt-
i cb4.chrX              I 20 I 23
s caeRem4.Crem_Contig0   591318 13 -  4500979 GAACACTATGgga-
i caeRem4.Crem_Contig0  I 11 I 19
s caeSp111.Scaffold630  5646018  7 + 20921866 AAAGGCA-------
i caeSp111.Scaffold630  I 23 I 7
s caeJap4.Scaffold18194  722140 14 -   823664 GAAAGCAACAGAGA
i caeJap4.Scaffold18194 I 11 C 0
e caePb3.Scfld02_0      1884844 44 +  4147112 I

a score=90623.000000
s ce10.chrX             3470793 236 + 17718866 ACTACCAGCGCGA--------------------------------------AAATCGTAAAATTGAGAGTGA----------------AAAGAAGAAATATGTGAAGA----------------------------CAGCTCAAAATGGCC-------------------AGAA-----TGGGGATGAGAC--AGCGGCAG-------CGCACAAAAACAGAAATGAGATGGATGGCATA----------------------AGAAGGAAG----AAAGG----AAGGAAGAAGCGAACACTACTTATTCACTAAAGCTCTTGCTGTAAATGGCAGTGCTAAACGA---TTTTCGTCGTTTTTTT------TTGTT-----------GTTG-------------TTCCGTC--------------AAG
s cb4.chrX              8602877 280 + 21540570 GCCAGCAAGAGAAAA------------------------------------GAATcgtaaaattgtc--------------------------aaaaatatgtgaaga----------------------------cagctcaaaatgg----------------------aaaaatgtggaGGATGAGACTGAGCGGCTGCTGCTTTTGCTCAAAAACAGAAATGAGACGGATGGCATGGcaaagaagaagcagaataAGAAAGAGAAGTAT--GAAAACGACGAAGAAGGACCGAACACTACTTATTCACTAAAGCTCTTGCTGTGAATGGCAGTGCTAAAcactctttttcttc-ctcttcta-----gTGCTCTCCTTCAGCGTTTG--------------CCCCAT--------------AAA
i cb4.chrX              I 23 I 70
s caeRem4.Crem_Contig0   591350 261 -  4500979 accaccaagaaaaaaacgaaaatagtACTCGGACTAAATACTTCACAAGTGAAATCGCAAAATTGtcagtaaa---------------aaagaagaagaatgtgaaGA----------------------------CAGCTCAAAATG----------------------------------GGATGAGAC--AGCGAC---------TGCACAATAACAGAAATGAGACGGATGGCAtg----------------------aagaaaagtga--agaaa----aaagaagaagcgaaCACTACTTATTCACTAAAGCTCTTGCTGAGAATGGCAGTGCTaaatgc-----ttcttc-ttcttct------gtgtt-----------TTTG--------------CCTTTC--------------AAG
i caeRem4.Crem_Contig0  I 19 I 7
s caeSp111.Scaffold630  5646032 212 + 20921866 GCTACC---------------------------------------------AAATCGTAAAATTGTCactgag---------------agaaaagaaatatgtGAAGA----------------------------CAGCTCAAAATGG----------------------GGAATCG-GGAGGATGAGAC--AGCGGC---------TgcacaaaaacagaaatgagaCGGATGgcatg----------------------aagaag-------aaaaa----ggcaaaGAAGTGAACACTACTTATTCACTAAAGCTCTTTCTGTGAATGGCAGTGCTAAAcgc----------------ttt------ctgtt-----------tttg--------------tctTTC--------------AAG
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0      1884888 230 +  4147112 ACTACCAA-------------------------------------------AAATCGTAAAATTGTcagcga----------------aaagaagaaatatgtGAAGA----------------------------CAGCTCAAAATGG----------------------GAA-----TGGGGATGAGAC--AGCGGC---------TggacaaaaacagaaatgagaCGGATGGcatg----------------------aagaagacgaagaaaaaa----gacgaagaagtgAACACTACTTATTCACTAAAGCTCTTGCTGTGAATGGCAGTGCTAAacgc----------------ttt------ttgtt-----------tttg--------------ccttTCAAAGCGAAAAAGTGAAG
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold18194  722154 293 -   823664 --------------------------------AATGCatac----------aaatca-aaaattgtcaGTTATTTATGTATTCAATCCAAGAACAAAAAGTGTGATGAAAGAAAGAGATATATAGACTTCTCAGCTCGGCTCGAAATGGACTGCTCTGCTCTGCTCGCCGAGCG-----AGCGCGTAAAGT--GACGAC---------GGAACAAAAACAGAAATGAGACGGATGGCGTG--------------------------------------------------GAAGCGAACACTACTTATTCACTAAAGCCCTTGCTGAGAAAGAGAATGGCATCAgaaattttgtttcttttttctgtcctcctatt-----------tttgttctcattttagtttcttcC--------------AA-
i caeJap4.Scaffold18194 C 0 C 0

a score=-2131.000000
s ce10.chrX             3471029  70 + 17718866 TGACTCTA------------------------------CGTCGCAAAATGAAGCT------CATAGAAACAAAGAGAGAGTTGTACT----TGC-------CCGAAGTTTG---------GCGTTC
s caeRem4.Crem_Contig0   591618  74 -  4500979 TGACTTCA------------------------------CATAAAAATTGGGAATC------TATTCAA---ATGGAATTAATGTACT----TGTTCCGTCACCCAAGTAGG---------AAGTTC
i caeRem4.Crem_Contig0  I 7 I 8
s caeSp111.Scaffold630  5646244  86 + 20921866 TGACTTCA------------------------------CATTAAATTCG-AAATCTACTCTTTTCGAGGGAAACGAATTAATGTACTTCtgtccttcttttctcaacttCG---------ATGTTC
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      1885118  76 +  4147112 TGAATTCA------------------------------CATAAAATTCGTAAATC------TTTATAG---AACGAACTAATGTACTTC--TTCTCCCATTCCCAAGTTAG---------ATGTTC
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194  722447 109 -   823664 TGAGTTTGGCCCTTGAGTCACGCCTCATGCGAGTGACTCGAAGAATACAAGAATA------GatgtaaaattgaaaatatgtgtaCT----TAT-------CCGAAGTTGGCGTTCTGTTGTGTTC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8603157  70 + 21540570 I

a score=114294.000000
s ce10.chrX             3471099 182 + 17718866 TGAGAACGTGAATCGG-------------------------------------TTAGTGACATAAGGGGGGAGGGCATCGG-CAATG----------AAGATTCTAACGAGCGATAAACGAATTTTGGGCGTCGAGGAGAA--CGTG------ACACTGTGTAAGCCCATTGG--T-----------------------GAAAACA--GGCAGATGGTC-AATGATTTGGAG---CAAAT----GGTGACATT-ACCAT-TCATCATGTTT--------------------------------------------------TCAG
s cb4.chrX              8603227 301 + 21540570 TCAGAAAGTGAATCGGTGGGGTTGGGTGGAAGAAGAAAGGGCTGGCTATCGGACGGGTGACATAAGGG----GGCCATCGGCCAATG-------GGTGAGATGCTAACGAGCGATAAACGAATTTCGTGAGTCAAGGAGACCTAAAG------ACACTGTGTAAA-CCGTTGTGACGCCGTCTGCATCATTTTGCCGTTGTCGACAGGGGCAGATGGCT-CGCAATTCGGAGCATCAATG----GGCGACAATCGTCAA-taatcatgtttttttctttgaaagtaGGATTTGGGAAAGATCACCCGTCGGTTTTCTTAGATTTG
i cb4.chrX              I 70 C 0
s caeRem4.Crem_Contig0   591700 191 -  4500979 TCAGAAAGTGAATCGG--------------------------------TTGGAGGAGTGACATAAGGG----GGCCAACGG-CAATG----------GAGATGCTAACGAGCGATAAACGAATTTTGTGCGTCAAGGAGAC--GAAG------ACACTGTGTAAA-CCATCGT--CGCCGTCC--------------TCGTCGACA--GGCAGATGGCC-AACAATTCAGAG---CAAAG----GGTGACAAT--TCAATTCATCATGGTT--------------------------------------------------TTTG
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5646335 186 + 20921866 TCAGAAAGTGAATCGG---------------------------------GGTAGAGATGACATAA-GG----GGCCATCGG-CAATG----------GAGATGCTAACGAGCGATAAACGAATTTTGTGCGTCAAGGAGAC--CTAT------ACACTGTGTAAA-CCGTCGC--C-----------------TAAGCCGTTGACA--GGCAGATGGTC-AGCAATTCAGAG---CAAAG----GGTGACGAT-GTCAT-TCATcatgttt--------------------------------------------------tcaa
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      1885205 189 +  4147112 TCAGAAAGTGAATCGG---------------------------------TTAAAGGGTGACATAAGGG----GGCCATCGG-CAATG----------GAGATGCTAACGAGCGATAAACGAATTTTGTGCGTCAAGGAGAC--CTAG------ACACTGTGTAAA-CCGTCGT--C---------------TTTCACCCGTTGACA--GGCAGATGGCC-AGCAATTCGGAG---CAAAG----GGTGACGAT-GTCAT-TCATCATGTTT--------------------------------------------------TCAG
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194  722556 209 -   823664 AGAGAAAGTGAATCGG---------------------TGTATATGCGAGTATGGGAGTGACATAAGGG----GGCCATCGA-TGTTGATGTCGCGGGGAGATGCTAACGAGCGATAAACGAATTTTGTGCGTCAAGGAGAT--GAAGAAGAATACACCGTGTAAA-CCGTCGC------------------------------ACA--GGCAGATGGTCGAGCGAATTGGAG---CAAAGGGGTGGCGAAAAC-GTCAT-TCATCATCTTT--------------------------------------------------TTGG
i caeJap4.Scaffold18194 C 0 I 270

a score=-1531.000000
s ce10.chrX             3471281  7 + 17718866 GAATAAT---
s cb4.chrX              8603528 10 + 21540570 CCGGAATCAg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   591891  9 -  4500979 TCGAAAT-AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5646521  7 + 20921866 gaaaaat---
i caeSp111.Scaffold630  C 0 I 483
s caePb3.Scfld02_0      1885394  7 +  4147112 GAATAAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I

a score=-4801.000000
s ce10.chrX             3471288 44 + 17718866 --TGGGGTTTTTCTCGaaaaaaaataatttaaaaaaaaaCGAAAAT
s cb4.chrX              8603538 36 + 21540570 --cagaatt--------agaaaaataatccGATAAAAATTAAGAAT
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   591900 17 -  4500979 --CGGA---------------------------GAAATCTTCgaat
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      1885401 10 +  4147112 GGTAAA---------------------------GAAA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-3078.000000
s ce10.chrX             3471332 52 + 17718866 -------ACCTTGGGAGATTTTGGTGTCCAGAGAGTTATGACATTTCGAATTCAAAATA
s caeRem4.Crem_Contig0   591919 57 -  4500979 tcttcgtttcatcGACAGTTTCAGTGT--GGTAGGGCATAACGTTTTTATCTACAacca
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1885411 23 +  4147112 TCGGCGTCCAATTAATGGTTTCG------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e cb4.chrX              8603574 51 + 21540570 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-9227.000000
s ce10.chrX             3471384 50 + 17718866 AAATCTTACCCAATTCAATTT------TGCGCTAGTTATTT---TCACATACGAATGCT
s cb4.chrX              8603625 52 + 21540570 CAGTCTTAATCAATTATGATTGGCAGGTGCATCGTTTCTTTGTGTGA-ACGCG------
i cb4.chrX              I 51 I 4
s caeRem4.Crem_Contig0   591976 39 -  4500979 -----aaaaccagaaaaaagtga-----gcaCTGTCTATAT---TAA-ACACA------
i caeRem4.Crem_Contig0  C 0 I 142
s caePb3.Scfld02_0      1885434 20 +  4147112 -----------------------TTGATGTTACGTccatct---tc-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-432.000000
s ce10.chrX             3471434 50 + 17718866 TAAATATGGGGTTTCAATCCAACTAGCAAGCATAGAATAAAATAGTTAAC-
s cb4.chrX              8603681 36 + 21540570 CAAACATGGCGTGCTAGATTCAA---------------AAGGTGGTTAATT
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_0      1885454 40 +  4147112 caaaaatgagATAGCAGTCTTAGTTG----------GCAAAATAATTGAC-
i caePb3.Scfld02_0      C 0 I 107
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I
e caeRem4.Crem_Contig0   592015 142 -  4500979 I

a score=-804.000000
s ce10.chrX             3471484 134 + 17718866 GTGTTATGGAAATTATTTTGTTTGTATAGAAAAACAACTTAACTTCATTCTTTTTTAAATT--TGAAGCGCC---TTGATGTGAAGC------TTTTTGTGAAATTTTCAAAGAAATCATATCTGCAAAAACTTAAAGGTCAATA
s cb4.chrX              8603717 123 + 21540570 GCTCTATTTCAGTTA-ATTGCTAGTTTagg-------------------cttttgaaaattcctgaaactCCAGTTTGATACGGATCAATAATTCAGTTTCAGACTTTGAAATGtaactgaaatgaaaaaagatgaCAATT--TA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1885494 107 +  4147112 I
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I
e caeRem4.Crem_Contig0   592015 142 -  4500979 I

a score=153.000000
s ce10.chrX             3471618 10 + 17718866 ----AAATCATGAT
s cb4.chrX              8603840 14 + 21540570 AGGCCagtctaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   592157 10 -  4500979 ----AGATTCTGAT
i caeRem4.Crem_Contig0  I 142 C 0
e caePb3.Scfld02_0      1885494 107 +  4147112 I
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-17491.000000
s ce10.chrX             3471628 146 + 17718866 TATTGTCACAATGTGCTAGTTATC--------TTAATGGTTTACTATAGAG--------ATAAAACAGTAATTTTTTCGGCTTAATTACATGTATTTGAG-CATCTAGAATTGAAAATAGCTGCATAAAAACAAAATTGATCAAGGATTTTTAAAATTAGAAA--
s cb4.chrX              8603854 137 + 21540570 ttttcaaaaattttggaaattttttgtgaagactaatttttttcgacgggaattcaaatttcaatcaccagaatttttgaaaaggttg-----AACTGAC-CAT---AGACTGTA-----------gaggaaaaaactga--aatcatttt----atcaAGAG--
i cb4.chrX              C 0 I 88
s caeRem4.Crem_Contig0   592167 121 -  4500979 TAATCAAATGTTTC----ACTATT--------CCAATATTATTGAATAGA---------TTGAGAAACCAGACTGGCCAACGGATTTG-----AATTACT-AAT---TAATTGAAA------ACACGAAAAGGACATTGT--AAAAAGTTC----ATCAGTAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1885601 114 +  4147112 TATTGAC---TTAC----AACATT--------ACAACTGTGTTCC--------------TTGAGACACAAAGAAGACTTACGCA--TG-----ACTTAGCAAAT---AGAATGATA------GCTTTGTGATTAATCTAA--AGGTTTTTG----TTCacagaaa
i caePb3.Scfld02_0      I 107 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-5219.000000
s ce10.chrX             3471774 62 + 17718866 TGTCCAA-----TTTAGGAAACATATT-----ACCTGGCCTATAAGTTTTTGGACACCAGAAAAGGACGCCT----
s caeRem4.Crem_Contig0   592288 27 -  4500979 ------------TGTACAGAATCTGGT------------TTACTG------------------------ACTAAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1885715 63 +  4147112 tgacaaaaaaaactgacgaaaCTTGATCGTGAAACCAGACTAATGGTTTT-------------AGGGAAACTAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e cb4.chrX              8603991 88 + 21540570 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-45435.000000
s ce10.chrX             3471836 276 + 17718866 TGTAAGCTTTCACTTCTAATATTGAAAAATTCAA--------GAAGA----TGTAAATA----------------------------TTGCTTAAA-AAAAGTACGTGATCTGACAAAAC--ATTTCTGGAATTTAAG-GTTTAGGGGTGCAGAATCTAAGTTGTTGTGGACTTAGGCAAGAACCAAGA--TA---TGCTTGTTCTACGTGAATAA--GAGGAATCTTGCATTGCCCA---GAAACAAAGGAAAAGTA----------ATTAGTAA----AACGCGTTTAT------AAGATCCCAAATCTTAATT------------AAATGTT--------AGCCACTAAAGTGCAATTTG-----TTGAAC-------------------T
s cb4.chrX              8604079 368 + 21540570 TGCGAATTTGAACTTCTAGATTACGGAAATTCATTGTGAATCAAACAAGAGTTTAAATGAAGCAGTTATCTGGTCCGATCCTAAAAATCTTCTGAT-AGAAGAA--AAGTCtagaaaagtgagttttcaagGACGAAGTATTTCAAAATGCAGAAACC---CAACTACAAACTT-GGCATATGCCACAAGCTACACtgatt--------tggaaaaatgattaTTCATACATTTCCTTCTTGAGGCAAGAGATTGATTACAAAACCAGATTGACCACCACAGTGGTTTTGT-------TGGTAGAACTAATTAGTTGATTCAAACGGAAAATGATTTCCTAA-AAACTCTATTTGTTC--TTTCACAATCAGAATTCTTTAATTGGttgatct-
i cb4.chrX              I 88 I 66
s caeRem4.Crem_Contig0   592315 209 -  4500979 --------TAAGCTTT-----------GTTTCAT---------AACA----TTCAAAcg----------------------------ttttctattgaaaagaa--aagacaat--------GTTTTCAAAGTTGTAA-GTTCTGAATTGCTGAAG------AGCTTTGAA----GGAAATTACTGTGAATTA---taagt--------tagaaaa----------aaacagtcgCCT------------GGTCAATTCC--------ATTTGCTA----GAcggttttat-------catttttgttaattaCT-------------AACTGAT--------AAATAATACTGAGt-----------ttaaaa--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1885778 163 +  4147112 --------------------------------------AGTAAAACA----CATACATG--------------------------------------AGAACGA--TAGCCTAAAAA-----GTAATCAGGATCTAAG-----------------------------------------------------CA---TGATT-------ATGGGAAA----------ATCCGTTCCCAT------------GAAAAACT----------------------GACGGAAGTGTGGGAGAATAATTTTAGAAGCTGGTT------------GAAGGATCTTTTCGTACTCTCTATAGATTCAGTTT-----CTGGAC--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-3216.000000
s ce10.chrX             3472112 69 + 17718866 TTTTCTGGAACA-----TTGGGAAAGTT------TCAACAAGTTTCATGAGAT----AAAATAGTTAAAAAGTATACATCAGTG
s caeRem4.Crem_Contig0   592524 48 -  4500979 ------tgaataaatttttgggaaagtt--------------TACAATGAGCT--TTAAACTAAGTGAGA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1885941 69 +  4147112 AATTCTAGAAcacatttcaaataaaactgaCCAGATGACTAATACACTGATATTATTCAAATAGTTTCG---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e cb4.chrX              8604447 66 + 21540570 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I

a score=-303.000000
s ce10.chrX             3472181 31 + 17718866 CAAGTATGATTAATCGAAAAACCAGACATAT
s cb4.chrX              8604513 25 + 21540570 caactaaaaattttcaaaaaaaaac------
i cb4.chrX              I 66 C 0
s caePb3.Scfld02_0      1886010 26 +  4147112 TAACCAAAAGgaatggagaaaagaga-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I
e caeSp111.Scaffold630  5646528 483 + 20921866 I
e caeRem4.Crem_Contig0   592572  0 -  4500979 C

a score=-8059.000000
s ce10.chrX             3472212 20 + 17718866 CGTACAAACCATCAATT----------GTA
s cb4.chrX              8604538 26 + 21540570 tgtacaa--AAACAGTTTTCTCTCGAAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   592572  7 -  4500979 ----------AATGGt-----------g--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5647011 18 + 20921866 CGTACAA--Cttcgatt----------gaa
i caeSp111.Scaffold630  I 483 C 0
s caePb3.Scfld02_0      1886036 10 +  4147112 ------g--tgtGGATT----------G--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  722765 270 -   823664 I

a score=168670.000000
s ce10.chrX             3472232 353 + 17718866  
s cb4.chrX              8604564 431 + 21540570  
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   592579 361 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5647029 380 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1886046 327 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  723035 365 -   823664  
i caeJap4.Scaffold18194 I 270 C 0

a score=1259.000000
s ce10.chrX             3472585 3 + 17718866 GCA
s caeRem4.Crem_Contig0   592940 3 -  4500979 GCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5647409 3 + 20921866 GTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1886373 3 +  4147112 GTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  723400 3 -   823664 TCA
i caeJap4.Scaffold18194 C 0 I 2843
e cb4.chrX              8604995 24 + 21540570 I

a score=2237.000000
s ce10.chrX             3472588 25 + 17718866 TCCTCATTCTCTCTCTAGGTCTCAC--
s caeRem4.Crem_Contig0   592943 24 -  4500979 TCCATATTT-CCCTCTATTCCTCTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5647412 25 + 20921866 TCCCtcctt--tctctatttctctccc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1886376 25 +  4147112 TCCTCGCTT--TCTCTATTCCTCCGcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8604995 24 + 21540570 I

a score=97977.000000
s ce10.chrX             3472613 498 + 17718866  
s cb4.chrX              8605019 460 + 21540570  
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0   592967 494 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 344
s caeSp111.Scaffold630  5647437 505 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1886401 514 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I

a score=273.000000
s ce10.chrX             3473111 1 + 17718866 A
s cb4.chrX              8605479 1 + 21540570 a
i cb4.chrX              C 0 I 1543
s caeSp111.Scaffold630  5647942 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1886915 0 +  4147112 C
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-4817.000000
s ce10.chrX             3473112 93 + 17718866 GTTGGCATTCGGAGTGATGAAAAGAGGGGTCGGCGAGGGTCTGGCAATTGCCGACCGGAAATTCTACAAAATTAAAGTTAAATGAAATATTTT
s caeSp111.Scaffold630  5647943 64 + 20921866 g-------------------agagggTAGT------AGATCT---ATTCATTCACttaaaactctatttttccagacaACAACGTACTATTT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1886915 41 +  4147112 ---------------------------------------------ACTTATTCTGGAGAAGC-------TTATGAATCAAAACGAAATGTTTT
i caePb3.Scfld02_0      C 0 I 116
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-850.000000
s ce10.chrX             3473205 146 + 17718866 GAAATTACATGGCAGTTGCCATGGTCTCAGATAATCATAACGAGTAAATGTAAATGAAAAATAATTTCCTCACGATAATAATGATCGGaaatataaaatatatatatatttttCTAACAATTTGAAGCTGTGCCTTACTTTCTGAC
s caeSp111.Scaffold630  5648007 105 + 20921866 -------AATGGAAGCTATGA--GTTTTA---------------TAAGCTAGACTTATAAAAAACTTTCGCAGGATGA--------------ATTAGAAATGAATATTCGCTTGTGGCAAAACTGTGTTATGACTCA---TCCAAT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1886956 116 +  4147112 I
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-1275.000000
s ce10.chrX             3473351 69 + 17718866 ----GTGAGCATCA-AGAAGTATGTTTG-TATCATTCTGCAAGTTGTTACAGTTACTAAATTCAATA--TAAAAGCA-
s caeSp111.Scaffold630  5648112 69 + 20921866 ATCAGTAACGGAAAGAGTAACATGTATGTTATCAGCATGAGAAATCT-----TTACTCA----AATAAGTGAAAATGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1887072 54 +  4147112 ----GTGGCCCTAA-AGAAGTTTAGTTCTTATCAGAATGAGAAACCT----------------AACA--TAAAAATG-
i caePb3.Scfld02_0      I 116 I 76
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-715.000000
s ce10.chrX             3473420 84 + 17718866 CTTCTGAGACCCCATACAATTCATTTTTCTGTTGTCCTGGTCTAAATTTAGAACTACTAAATTCA---TCAAATCGAAAAAATTGAA
s caeSp111.Scaffold630  5648181 66 + 20921866 ------------TAGAAAACTGGTTTATCAGCATT-----TTCAAAT----AGGTACTGACTCTAGTACCATGTGGAAAATAGCAAG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1887126 76 +  4147112 I
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-9587.000000
s ce10.chrX             3473504 209 + 17718866 TTTGACTGT------ATTTTA---TGAATTTATTATACATATATCGAATCTCTATATTGAATCTACAGTTAAAATGTTTCAATTAAAAATTTAAATTTAGAAAATGAA-----TACAAATT-ACCATGTAATAGAAAAACAATGTGTCAATGATATGATCAACTTTTATTCAAAAGCTTTTAGTATGGA--ATATCAGAATTTGTCTGAAAAGCTGTT-ACGAAATG
s caeSp111.Scaffold630  5648247 165 + 20921866 -TTCCCT--------ATTTTTGTTCCAAACCTTTTTacttagaaaa-------atattagtCTAAAAAGACGAAG------------CGTTTTTACATAGGACACGAATATATTGCATTGGTTTTTTGCGCTTGAGAA-----------------TGAAGCTGTTATAGTGGTAGAC-AGTAGTATAGCTCAAACTCCACTTT----------------ACAAAATG
i caeSp111.Scaffold630  C 0 I 147
s caePb3.Scfld02_0      1887202 207 +  4147112 TTTAACTGAAATAAAGTTACAAgttaaattcatttttcagcacacG-------GTAATGGCTTTACAGTATGAAGAtactaaattatttttgttgtattgaagatgaagtttttgaaaaag-tttttgtgtttcaacaa---------aatattttggagttcccgtttttcaaaac--tttgtatcaaacaaaaaaaactttgtcc-AATATCGgtcaacaaaata
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-39.000000
s ce10.chrX             3473713 30 + 17718866 GAAAAAAGAAAATATTTCTCATTCGGACTG
s caePb3.Scfld02_0      1887409 14 +  4147112 aaaa----------------attccaactg
i caePb3.Scfld02_0      C 0 I 142
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeSp111.Scaffold630  5648412 147 + 20921866 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=0.000000
s ce10.chrX             3473743 169 + 17718866 TGTAATTTAGCCAGTTCTCATTGTTTCATTCTAGTGAGTATATAAATAAGTGAAATAATTCTAGAACTTCTTCCAATTGATTTACGTTTACCAACTTTATCTTCAATGAGTTTTCATTTTAAATTTGGCGTTTAGTAAATTTCAAATCGAAACTCTACTTTAAACAGAG
e caePb3.Scfld02_0      1887423 142 +  4147112 I
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeSp111.Scaffold630  5648412 147 + 20921866 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=-435.000000
s ce10.chrX             3473912 37 + 17718866 AAACAAGCAAAAGATGGAGCACAAGTAAGAAAAAGTG
s caePb3.Scfld02_0      1887565 31 +  4147112 AGACAAG-AACTGATGGTTTACCTG-----ATTAGAT
i caePb3.Scfld02_0      I 142 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8605480 1543 + 21540570 I
e caeSp111.Scaffold630  5648412 147 + 20921866 I
e caeRem4.Crem_Contig0   593461 344 -  4500979 I

a score=1692.000000
s ce10.chrX             3473949 3 + 17718866 ACT
s cb4.chrX              8607023 3 + 21540570 ACT
i cb4.chrX              I 1543 C 0
s caeRem4.Crem_Contig0   593805 3 -  4500979 ACT
i caeRem4.Crem_Contig0  I 344 C 0
s caePb3.Scfld02_0      1887596 3 +  4147112 ACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e caeSp111.Scaffold630  5648412 147 + 20921866 I

a score=73527.000000
s ce10.chrX             3473952 629 + 17718866  
s cb4.chrX              8607026 700 + 21540570  
i cb4.chrX              C 0 I 1473
s caeRem4.Crem_Contig0   593808 709 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5648559 658 + 20921866  
i caeSp111.Scaffold630  I 147 C 0
s caePb3.Scfld02_0      1887599 641 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I

a score=2292.000000
s ce10.chrX             3474581 4 + 17718866 GCTT
s caeRem4.Crem_Contig0   594517 4 -  4500979 GCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5649217 4 + 20921866 GCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1888240 4 +  4147112 GCTT
i caePb3.Scfld02_0      C 0 I 63
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I

a score=612.000000
s ce10.chrX             3474585 7 + 17718866 GCATGTA
s caeRem4.Crem_Contig0   594521 7 -  4500979 TTCTata
i caeRem4.Crem_Contig0  C 0 I 149
s caeSp111.Scaffold630  5649221 7 + 20921866 TTCTATA
i caeSp111.Scaffold630  C 0 I 151
e caePb3.Scfld02_0      1888244 63 +  4147112 I
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I

a score=0.000000
s ce10.chrX             3474592 16 + 17718866 TGTGTTTGTTTTATGT
e caePb3.Scfld02_0      1888244 63 +  4147112 I
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I
e caeSp111.Scaffold630  5649228 151 + 20921866 I
e caeRem4.Crem_Contig0   594528 149 -  4500979 I

a score=-854.000000
s ce10.chrX             3474608 114 + 17718866 TTGAAATTTGTTTTATGTTCGAAATTAATAAAAAGTAAT------------------------TTTTCGAAAACGTTTCTCAAGGTAAAACAACTGTTTTTTTAAGCA---TAACAATTTCTTTTTCAAAATTC----CTCTTG-----------------G
s caePb3.Scfld02_0      1888307 159 +  4147112 ttgaaaatgaatgtatgggagaga-gaacaaaaaagaatggagcCGACTGGAATAGAAAGATATGGCTGACAGAgttgattaaa--aaaacaaatgtttggTTAATAAAGTTGATATTACGTTCTTAAAGGTGCCAGGCTCTTGCAGAGAATGACCTGGGAA
i caePb3.Scfld02_0      I 63 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I
e caeSp111.Scaffold630  5649228 151 + 20921866 I
e caeRem4.Crem_Contig0   594528 149 -  4500979 I

a score=-1073.000000
s ce10.chrX             3474722 36 + 17718866 ATTTTTTTTTAATTTC---CAGTAG-----------TTCAGAGCAATGTT
s caeSp111.Scaffold630  5649379 35 + 20921866 ATCTTG-ATTGAATTT---GATTgg-----------ttaaaaatagaaat
i caeSp111.Scaffold630  I 151 C 0
s caePb3.Scfld02_0      1888466 50 +  4147112 ATATTATATTAAATTTTCATATTGACAActtttgacctaaaaataaaCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I
e caeRem4.Crem_Contig0   594528 149 -  4500979 I

a score=-36946.000000
s ce10.chrX             3474758 192 + 17718866 -----------------TGAACTCCTAAAGTGTCTTAATACAAAAAA--------TTC-------AAAAATAACTACAATGCAAAAAC-------------------TAGTAG-----------AAA-------ATTTTGAGCGACTTCAGCA--------------------TTTCCGACTGTAAATAGAAAACTTT--TTTTG--GAACGTTTC-------CCTAAGATTGTTAATTATTATAGCATT--------------------TTAATTTCTGATATT---------------------ATGGAATACA-----------------GAAACTACGAAAATCGA
s caeRem4.Crem_Contig0   594677 218 -  4500979 -----------------TGAACTTC-------------TGCAAGAAact------tactgaaaaatgaaatgttt----attAAGAAA----------TCTTTTGAATAGTTTGAATAGCGGCTGAA-------AGTTTTAATAAAGTTCGTGAAACCTTtttatttatcaaattt-----tgtaaaaaaaatctttt--tttcc--gaattttaa-------tATGAAAGAACAAACTATTGCGTCCTTATTAA-----------AAAGTGAGACTTGGTTTTT------------------------------------------------GGCTtaacaaaaaacta
i caeRem4.Crem_Contig0  I 149 C 0
s caeSp111.Scaffold630  5649414 165 + 20921866 gtta------------------------------------cgaaaaagatcatttttcttggcT-GCAAATActtccagagaaaaaaa--------actattttt--tagtCT--CTTCCATCCAAATTCCATCAGCTGCAACAA--------------------------------------GAAATTGACTCTCTTA-TGATC--AACCAACAACAACTCATAAGAAAAAGTACATTT------------------------------CAAATCCTGAGTATT-----------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1888516 304 +  4147112 GCCAGTTGTACAAGgtataaact-----------------caaaaaagg------ttCGAGAATAACAGATGTTTAGagctgaaaaaactggaaccCTTATTGTTAGTAGCCT--ATTGCTGCTAGA--CGAAACgtttgaacaattttagtctaagttt-------------ttt-----tggaactcgGGGTTTTTATTGATCGAAACTATTAGTTAGTC-CCAGAGTgagtactttttttcatatatctGAACTGTAACACCGAAAACGAACCCTTAGTTTTAATGATTTTGTAAGATcaaacatgaaacacaaaccaatcaaaaaccgaagcaaaacaaaaaacca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  723403 2843 -   823664 I
e cb4.chrX              8607726 1473 + 21540570 I

a score=51300.000000
s ce10.chrX             3474950 127 + 17718866 AACAAAA-----GTTTCCGGAAATGAATTCTCAAGTTGTAAGCAGATCCA---------CTTTGTA----ACAAATGTTGTCATTGAATACGAGAATGCTCAATGAGTCTTCTCCTTCCATGTGCCGAAATATATTTGCGT--GCAG
s caeRem4.Crem_Contig0   594895 121 -  4500979 agaaaatgtt--tttaccgGAAGAgagttttcaagttgaaaGCAGATC-----------CATTGTT----ACAAATGCTGTCATTGAATACGAGAATGCTCAACGAGTCTT---CCTCCATGTGCCGAAATATTT----GT--GCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5649579 111 + 20921866 ------------TTTTGCGGAAgcgaaatttcgatttgtgagcaga-------------aatcg-a----agaaatgtTGTCATTGAATACAAGATTGCTCAATGAGTCTT--CCTTCCATGTGCCGAAATATTT----GTCCGTAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1888820 127 +  4147112 aaaaaaaaagtattttccgGAAATGAATTCTCAAGTTGTAAGCAGATCCAAC-------ATTTGTA----ACAAATGTTGTCATTGAATACGAGAATGCTCAATGAGTCTT---CTTCCATGTGCCGAAATATTT----GT--GTAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  726246 123 -   823664 AACGAGA-----ACTGGCGGAA------TTGCAAATAGTAAGCAAATCCATCcacttttcattttatttcacgaaTGTTGTCATTGCATACGAGAATGCTCAATGAGGCTC-------CATGCGCCGAAATATTT----GT--GCAG
i caeJap4.Scaffold18194 I 2843 C 0
e cb4.chrX              8607726 1473 + 21540570 I

a score=77249.000000
s ce10.chrX             3475077 273 + 17718866 AAATAAGCAAATGACACAACAAAGCTTTGTTG-CGGGCAAGAAGACTCC-ATACACATACAAATTTATAAGCTCTCTT------GCTTTCTCCTTGCGAGTTTTGACAA--------TTTTCTAATGT------------ACCTGCGGAAAGAA------------AAATGTTTGATAGGAAAAAAAAA--TT---------AAAAA---TGT------TGGTCGCAAGCTCAAACTCG--AG----CTTTTTCCGATTTCTGGTGATT---------GATGGATATTCAAAGGCCT--TTTTTTGTTTGTTTTGATTAG---CTGCGAGATCAGAGCTAAC---AAAAACCGGAA
s cb4.chrX              8609199 254 + 21540570 AAATAAGCAAATGAC---ATAAAGTCATGTTGTCGGGCAAAAAGACTCC-----------------ATAAGCCC-CTC--------------GCGG-AAGTTTTGTCA----------------ATGTTCAT-----TATACCTGCGAAAGAAA------------tggaaatcaaagaaaaaaaatgt--tg----aattgaaaaa------------tgctcaaGCTGT----------AGGCG-GTGATTTCGATTTCTGGTGAGCAAGAAGGGGGAGAGATATCTTCAggctaa-ttttttgtttgttttgatCAATTCCCGTAAGATCAGAGCCAAC---AAAAACCGGAA
i cb4.chrX              I 1473 C 0
s caeRem4.Crem_Contig0   595016 279 -  4500979 AAATAAGCAAATGAC---ACAAAGCCATGTTG-CGGCC--GAAGACTCC-ATACACATAC-AAATTATAAGCTC-TTC--------------GTTGCAagatttgtcaa--------ttttcttaTGTTCAT-----TACACCTGCGGAAGAat------------caaacaataaaaattgaaaaagt--cg--------gaaaaattATGT------TGCTCAAGCGGTTTTTTCTTTGAGGCATGGGATTAAGATTTTTGGTGAGT---------GAAGGATATCCACAggctaa-ttttttgtttgttttgatCAG---CCGCGAGATCAGAGCCAACAGAAAAAACCGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5649690 302 + 20921866 AAATAAGCAAATGAC---ACAAAGCTTTGTTG-CGGAA--TGAGACCCCTCTACACATACAAAATCATAagccctctc------tctctcttcttgcaagttttcccaaattttcaattctcttatGTTCAT-----TATACCcacggaagaaa------------agaagaatcaaacaagaaaaatt--ttatagacttgaaaatgaatgt------tgCTCTTGAGTTTTGTTTCC--AGGCG-TTTATTCCGATTTTTGGTGTAC---------AACGGATATCCGaaagatga-ttttttgtttattttgattAG---CCGCAAGACCAAAGCCAATAG-AAAAACCGGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1888947 295 +  4147112 AAATAAGCAAATGAC---ACAAAGCCTAGTTG-CGGAA--AGAGACTCCCATACACATACAAAATTATAAGCTCTCTC--------------CTTGcaagttttctcaaat------ttctcttA--TTCAT-----TACACCTgcgggaaaaaat---------gagaagaatcaaataaaataatttgatGATGGAGACAAAAAT---TGTATAGCATGACACAGGCTCTTGTTCTC--AGCCG-TGTATTTAGATTTTTGGTGAGC---------AACGGATATCCGAAggcgaatttttttgtttgttttgatcAA---CCGCAAGATCAGagccaacaa-aaaaaccggaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  726369 247 -   823664 AAATAAGCAAATGAC---ATGGAGCT-TGTTG-CGG----AAGGGAGCC-ATACATATGCACATCTATAAgctcttttaaaattttttcttccgtCTAATTTCTCGCAC--------TTgtcatacatacatacatacatacctgagagcacattttttctgtcggagcaaaaacaaaaaggaaaaagc--cG--------ACAGAG------------CA--------------------Aggtt-ttcat--------------------------ga-------------------ttttttgtttgttttgattAC---CCGCAAGATCTGAGCTAACAGAAGAAaccggaa
i caeJap4.Scaffold18194 C 0 I 187

a score=7240.000000
s ce10.chrX             3475350 58 + 17718866 GTCGCCATTGTTTTA-CAAAGATATG-CATACATAGATTGACAG-----GAATCTGAATAATTTT
s cb4.chrX              8609453 65 + 21540570 GATATCTTTGTTCTTAAGCGGACATGTCGGGGGGATAGTGAcgacgaaaaaatctgaaaaatctt
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   595295 41 -  4500979 GATATCTTTGTTCTT-TGCGGAcatg-----------------------gaatctgaaaaatctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5649992 40 + 20921866 CGTGCATTTGCTCTT-TGAGGACATG-----------------------AAATCTGAATTATTG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1889242 39 +  4147112 GATGCCTTTGTTC-T-TGTGGAgatg-----------------------gaatctgaaaaatct-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  726616 187 -   823664 I

a score=-1567.000000
s ce10.chrX             3475408 12 + 17718866 -TGT-------TGATAAAAA
s caeRem4.Crem_Contig0   595336 12 -  4500979 gtATAAT----TGATA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650032  6 + 20921866 -TAT-------TGA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1889281 19 +  4147112 -tatAGTTTAGTGATAAGAA
i caePb3.Scfld02_0      C 0 I 1324
e caeJap4.Scaffold18194  726616 187 -   823664 I
e cb4.chrX              8609518  5 + 21540570 I

a score=-1804.000000
s ce10.chrX             3475420 16 + 17718866 ----------AGTCATAAGGATAAAA
s caeRem4.Crem_Contig0   595348 16 -  4500979 ---------ATTTCCCAGAGTTGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650038 25 + 20921866 AATGATAGTGATTCCTTATCTCAAA-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1889300 1324 +  4147112 I
e caeJap4.Scaffold18194  726616 187 -   823664 I
e cb4.chrX              8609518  5 + 21540570 I

a score=869.000000
s ce10.chrX             3475436 18 + 17718866 ATGTATTCACAATCTCTT
s caeSp111.Scaffold630  5650063 18 + 20921866 ATGTTCTCAGAGTCTTTT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1889300 1324 +  4147112 I
e caeJap4.Scaffold18194  726616 187 -   823664 I
e cb4.chrX              8609518  5 + 21540570 I
e caeRem4.Crem_Contig0   595364  0 -  4500979 C

a score=0.000000
s ce10.chrX             3475454 710 + 17718866  
e caePb3.Scfld02_0      1889300 1324 +  4147112 I
e caeJap4.Scaffold18194  726616 187 -   823664 I
e cb4.chrX              8609518   5 + 21540570 I
e caeSp111.Scaffold630  5650081   0 + 20921866 C
e caeRem4.Crem_Contig0   595364   0 -  4500979 C

a score=91.000000
s ce10.chrX             3476164 1 + 17718866 T
s caeRem4.Crem_Contig0   595364 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1889300 1324 +  4147112 I
e caeJap4.Scaffold18194  726616 187 -   823664 I
e cb4.chrX              8609518 5 + 21540570 I
e caeSp111.Scaffold630  5650081 0 + 20921866 C

a score=90.000000
s ce10.chrX             3476165 12 + 17718866 TGTGTTCACAC----T
s cb4.chrX              8609523 16 + 21540570 TGTATTCCCAGGAGCC
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   595365 11 -  4500979 --TGTTCCCAGA---C
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1889300 1324 +  4147112 I
e caeJap4.Scaffold18194  726616 187 -   823664 I
e caeSp111.Scaffold630  5650081  0 + 20921866 C

a score=1017.000000
s ce10.chrX             3476177 5 + 17718866 TTTCA
s cb4.chrX              8609539 5 + 21540570 ATCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   595376 5 -  4500979 TTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1890624 5 +  4147112 ttttg
i caePb3.Scfld02_0      I 1324 C 0
e caeJap4.Scaffold18194  726616 187 -   823664 I
e caeSp111.Scaffold630  5650081 0 + 20921866 C

a score=11164.000000
s ce10.chrX             3476182 25 + 17718866 ATTTCTCAGCCATATCA-----------------GAGTGCCT
s cb4.chrX              8609544 42 + 21540570 ATTTCTCAGCCATATCCCATTTTTTCGTTAAGTTGAATGTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   595381 37 -  4500979 ATTTCTCAGCCATATCAC-----TATGGGTAGTTGGATGTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650081 25 + 20921866 ATTTCTCAGCCATATCA-----------------AAATGGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1890629 36 +  4147112 atttctcaGTCATATCAC------ATTCAAAGTTGAATGTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  726616 187 -   823664 I

a score=253505.000000
s ce10.chrX             3476207 579 + 17718866  
s cb4.chrX              8609586 658 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   595418 533 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650106 548 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1890665 544 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  726803 552 -   823664  
i caeJap4.Scaffold18194 I 187 I 27

a score=-561.000000
s ce10.chrX             3476786 2 + 17718866 AA
s cb4.chrX              8610244 2 + 21540570 TT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   595951 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5650654 2 + 20921866 AG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1891209 2 +  4147112 GG
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold18194  727355 27 -   823664 I

a score=-13869.000000
s ce10.chrX             3476788  48 + 17718866 ----ATTT------------------------------TATTTTATATGCCGATGTTC-----------------------------------------CTCATTTTTTTTGCG-----------------------TATGTTTTT
s cb4.chrX              8610249 140 + 21540570 ----ACTTGGAAACtgttgaattgaaaattcctggATTGATTTGTGatgctattttttttgttaaccGATGATTTTGATCCCTGATTCCTAGGATGTGggacatttttgtagttctgTAATAGGTAAGTCTAGAAAatatattt--
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   595956  47 -  4500979 ----ACTTCACAA-------------------------GATTCATTATATTGTTCTTC-----------------------------------------GAGATTTATTTTGCT---------------------------TTT--
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5650656  26 + 20921866 ATTGATCTGGAAA-------------------------ATTCCGCTATGCT-----------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 I 5
e caePb3.Scfld02_0      1891211  55 +  4147112 I
e caeJap4.Scaffold18194  727355  27 -   823664 I

a score=-8705.000000
s ce10.chrX             3476836  8 + 17718866 --------------------------TCTCGATT-------------
s cb4.chrX              8610389 47 + 21540570 ccaaaaaaagatttgaaagttGTCAATGTGACTTGACAAATCCGATA
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   596003  8 -  4500979 CC---------------------------------------CTGATA
i caeRem4.Crem_Contig0  C 0 I 173
s caeSp111.Scaffold630  5650687  8 + 20921866 --------------------------TCAGCctt-------------
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      1891266  8 +  4147112 --------------------------TCTAGCTT-------------
i caePb3.Scfld02_0      I 55 C 0
e caeJap4.Scaffold18194  727355 27 -   823664 I

a score=-32827.000000
s ce10.chrX             3476844 210 + 17718866 --------------TATTGG----GCTAGTGTTAAAGAATTT----AGAAATT----------------------------AAAAATATTCTT-----CTTTTCAAAATCCTAGA-AACCTTCTTGAA-------AAATGAGGCAGAAACTAAGACGATCAAATACATCTCTTGTTGTTTCCAGTTGATTATTCGATTCTCTAATCAGCGTTT----------CTGCTTAGAAATTTCGTTTGATTCCA----TGATTGAATGAAGGAGAAGAGACATCAATTCAAT-------------
s cb4.chrX              8610457 228 + 21540570 TATCtctctcg-attactgtaaaaggttttgaaaaaagtttttacaaaaaatt------------------------tctgaaaaatatgatc-----ttttttgaaatttcaca-------ctgGAAATAACACAAGTCGAGTCAAAATT-----------AAAAGT--ATGGGGGTTTCTAA--GAT--TTCGGTAttcga--caaattttcaaaaaaaaactttttaagaTTTCA------TTATAATactgttt---tttgaaacaaaagaa-------TAATCGCGTTTGAAACT
i cb4.chrX              I 21 C 0
s caeSp111.Scaffold630  5650695  95 + 20921866 ---------gatatttttgt------ttctccgaaaattctt-------aatt---------------------------------------------tttctataag-CAACCA-----------------------------------------------ATGAAT-------------------------------------------------------TTATTCAAGG-----------CTCCAGCCGCGTTTTGATTAAAAAGGAAGGAG------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1891274 239 +  4147112 ---------CA-ATTATcgc------ttttccaaaaaattct-------gattcaaacgtttttttcagtagggtggcctgaaaattattttcatctatttctaaaaatcaaacatcGTTTTGTCGTAGTGTTTCAAGTTTGACGTAAATTATCTTGATCAGATAAAT--ATTGTAATTAGAAG--GAT--GTTGATGTcc----caaact----------gatttttcaagattttcatttgtttttatcCTTGTTGGAGTCAGCTAGCCAGAAG-------TAATtt-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355  27 -   823664 I
e caeRem4.Crem_Contig0   596011 173 -  4500979 I

a score=-16487.000000
s ce10.chrX             3477054 64 + 17718866 GTTTCATA----CATCAAATATATCTTCAAA----------------ATTTCTTAAGCAAGAAAAATTGAGATGCATATCTGAA
s cb4.chrX              8610685 55 + 21540570 GCGTCATAGgtggattttttaatttttcaat----------------ttttttaaa--aatcgcgATT-----------CTGAA
i cb4.chrX              C 0 I 333
s caeRem4.Crem_Contig0   596184 57 -  4500979 atttcaaa----ccTTGTACActtattcata----------------attttttgt--tattatgcTT-----TCATGACTTAA
i caeRem4.Crem_Contig0  I 173 C 0
s caeSp111.Scaffold630  5650790 16 + 20921866 --------------------AATTGTTAGAA----------------acctc--------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1891513 48 +  4147112 atttcagt----tctttttcaattttgaaaataacataaACCGATCCGcctc--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355 27 -   823664 I

a score=-18156.000000
s ce10.chrX             3477118 132 + 17718866 -TGAAAATTTTCTACATACATGTGTATGTAC-----GTACATTCAGATGAAAAATCTGATATTGGCTATGTTAAATT--------TATATTATTTTTAGCAT--TCATTAAACAATATCAGAATT--------AATTATAATTTGGATTGAAAGTG
s caeRem4.Crem_Contig0   596241 118 -  4500979 TTGAAACTTCTGGCTAAAATGATCTTTAGACTTCGGAATAATTTAGGAAAATCGCAAAGTCACAATT-AGTTAagct-----------gttttttttagaat--ccaataaa---------aatt--------atttcttgtTCAAAGC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650806  68 + 20921866 -tgaaaatat--------------------------gagca----------------------------ctcaaaca---------------------aaatgatcagaaaa---------aacg---tttgaattaatttttcggattggaatta
i caeSp111.Scaffold630  C 0 I 73
s caePb3.Scfld02_0      1891561 133 +  4147112 -caaaaatgttt-------tgatgtgTATATAACTAAAGCATCCTGGTTACCAGCAGGGTAacgttt-tctcagaaattttgaatatcgaTTTGTCTTAAATAAATACGAAA---------AACGGACTTTACAAGTATATTTCAAACATG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355  27 -   823664 I
e cb4.chrX              8610740 333 + 21540570 I

a score=-5985.000000
s ce10.chrX             3477250 92 + 17718866 ATGAATATAAATTTTGGATTGACAATCTCGGCGAACGAAAAGATCGAAAGATTATCGTGTAGGTAGAATAAAAACCAGAATAT-CGTTCTTTT
s caeRem4.Crem_Contig0   596359 57 -  4500979 -------------------------AATCTACAGTTTGCAAGACCAAATGATTC-----CACTTAACctattca--taaaaataccTAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1891694 73 +  4147112 ----ATGT---TATTGTGTTTTC-ACTtcttagattttgaaaacctaGAGATT---------GTAAGCTAACAA--GGaatgt-tttgctttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355 27 -   823664 I
e cb4.chrX              8610740 333 + 21540570 I
e caeSp111.Scaffold630  5650874 73 + 20921866 I

a score=-9341.000000
s ce10.chrX             3477342 53 + 17718866 ---GTTCGTAGTCTGGTGATTAATGCCGTATCAGGAA------CTTTTGATCTCG------ATAAA--CT
s caeRem4.Crem_Contig0   596416 42 -  4500979 ATTTCTAA--------------------TCTATCGAA------CTTTTGGTCTTCCCCCCACCAATCC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650947 31 + 20921866 ---GTTCA--------------------TTACCTGAA------TTTACAATCTTC------CGAAC----
i caeSp111.Scaffold630  I 73 C 0
s caePb3.Scfld02_0      1891767 53 +  4147112 ---tttcaca---taGTAAGCAAC-CTTccattcgaaaacatttttactttcttc------aCAAT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355 27 -   823664 I
e cb4.chrX              8610740 333 + 21540570 I

a score=-24571.000000
s ce10.chrX             3477395 205 + 17718866 ACTAG--GACTGACCATTTGATCTG----AATCAATTGTTATTCAAAAATCGAGATTGTCAGTTCTAAGAATTTCATATCCAATTCTGCTCCGGAGACTT----------TAGGTCGAAATTTTCAATTTCTTGAGGTAGATC--TTGCTATTTGAAATTGTCATTGACAGTATACAAT----------------------AATCT-GAAAAGTTG----AAACTCCGTTATATTCCAA--TTCTCTCATGA
s cb4.chrX              8611073 206 + 21540570 ATTAA--TGTTAACTTTTTGATCAC------------------TGATAACCGAT------------------TACCCGTTTCGTTAGTTTCCCGAAATTC-TAATCTTCCGATCTTTTGATCGAGGCCCGCTTCAACTAcactatatattttttgccaACAGCATAACCgataaaaatactttttccCCGCTCTTTTCCTTAATCTCGAAAcgtcg----aaattccgtt---ttaTAACTTCTCCAGCTGA
i cb4.chrX              I 333 C 0
s caeRem4.Crem_Contig0   596458 105 -  4500979 ACTAAAGtgttgtttttccaaaaac---------------------aaaccAAT----------------------------------------AAATTC---------------------------------------------atggttttttaaaacaaga-------------------------------------aatctcaaaatgttgaaacaaatTCCGTT--ATTCTAA--TTTCCACCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5650978 111 + 20921866 -------T----------------------------------------------------------------------TTTGATCCCGTTTACGAGACTA-----------------TAGTTTTTCATACC---CACAAACct---------------------------ataaatata-ttttttctgcttcc-------AATCTCGAAACGTTG----AAATTCCGCT--ATTCTAA--TTTCC-TTTGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1891820 212 +  4147112 -------TCCAATTTGCACTATCACATTCAATTGAATTCTAAACGAGAACTAATATCG--------------TTACCGTTTGATTGCACTTCCCGAACTACTCATCTTAAGAACTTTTGATCTTTCTAACCGTGTACTAAACT--CTTGTTTTTGCCAGCAACA-CACCCATaaatatacttttttaaatcttt-------AATCTCGAAACGTTG----AAATTCCGTT--ATTCTAA--TTTCC-TTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  727355  27 -   823664 I

a score=134909.000000
s ce10.chrX             3477600 163 + 17718866 CACCTGCACTAATCAGCGCGCATCTTTCCATTTTGCATCCTTGACG--GAAAACAGTTCCGTTTGTCTTTTTCT----------ACATTGCTTTTTCACATTCGG-AGGTGCTAAGAAACGATTAGCAATGAAAGCGAAA-TGTATACACAGTAATTACGATAAAACTAATCCGA-CT
s cb4.chrX              8611279 169 + 21540570 CACCTGAACTAATCAGCGCGCATCTC------TTGCATCCTTGACG--GAAAACAGTTCcgtttgtttttttccgtttttctcttcaaatgtTTTTCGTTATCGG-AGGTGCTAAGAAACGATTAGCAATGAAAGCGAAATTGTATACACAGTAATTACGATGAAACTAATCTGAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   596563 163 -  4500979 CACCTGAACTAATCAGCGCGCATCTCTCTCTTTTGCATCCTTGACG--GAAAACAGTtccgtttgttttttt---------ttctcgacgGTGTTTCGTTATCGG-AGGTGCTGAGAAACGATTAGCATTGAAAGCGAAA-TGTATACACAGTAATTACGATCAAACTAATTTCA--T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5651089 173 + 20921866 CACCTGAACTAATCAGCGCGCATCTTTTCCTTTCGCATCCTTGACG--GAAAACAGTtccgtttgtttttttttcaactgtcTGCTATCTGCTTTTCGTTATCGG-AGGTGCTAAGAAACGAATAGTAATGAAAGCGAAA-TGTCTATAGTATAATTACAATGAAACTAATTTTA-CT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1892032 167 +  4147112 CACCTGAACTAATCAGCGCGCATCTTTTCTTTCTGCATCCTTGACG--GAAAACAGttccgtttgtttttttct------tcagctatctgttttttgatatcgg-AGGTGCTAAGAAACGATTAGCAATGAAAGTGAAA-TGTCTACGCAGTAATTACAATGAAACTAATTTTA-CT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  727382 158 -   823664 CACCTAAACTAATCAGCGCACATCTTCAAAAGAC-CGTCTTTGACGATAAAAACAGTTccgtttgttgtttttt--------------gtgttttatgCTATCGGAAGGTGCTAAGAAACGATTAGAAATGAAAGCGAAA-CGTGTATA--GTAATTA-GATAGAAATGATCGGA-TT
i caeJap4.Scaffold18194 I 27 I 554

a score=-3546.000000
s ce10.chrX             3477763 3 + 17718866 GT-C
s cb4.chrX              8611448 2 + 21540570 GC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   596726 2 -  4500979 TT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5651262 2 + 20921866 GC--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1892199 3 +  4147112 TTC-
i caePb3.Scfld02_0      C 0 I 584
e caeJap4.Scaffold18194  727540 554 -   823664 I

a score=-2038.000000
s ce10.chrX             3477766  9 + 17718866 CGATTCTAT------------
s cb4.chrX              8611450 20 + 21540570 CGatc-tctcgaaaaaaaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   596728 17 -  4500979 CGgtcatcttcaaaaaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5651264  9 + 20921866 CGACTCTGT------------
i caeSp111.Scaffold630  C 0 I 18
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e caeJap4.Scaffold18194  727540 554 -   823664 I

a score=-547.000000
s ce10.chrX             3477775 15 + 17718866 GTGGCTACCTTAATT
s cb4.chrX              8611470 15 + 21540570 acagttttGCTATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   596745 11 -  4500979 ----ttgatctgCTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e caeJap4.Scaffold18194  727540 554 -   823664 I
e caeSp111.Scaffold630  5651273 18 + 20921866 I

a score=8245.000000
s ce10.chrX             3477790 23 + 17718866 TTACTGCAAAGTCGAAATGTCAA
s cb4.chrX              8611485 23 + 21540570 TTACTGTTAAATCTAAATGTCAA
i cb4.chrX              C 0 I 1376
s caeRem4.Crem_Contig0   596756 23 -  4500979 CTACTGTTGGATCAAATTGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5651291 23 + 20921866 CCACTGTTAGATCAAAATGTCAA
i caeSp111.Scaffold630  I 18 C 0
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e caeJap4.Scaffold18194  727540 554 -   823664 I

a score=781.000000
s ce10.chrX             3477813 9 + 17718866 AACATCGTT
s caeRem4.Crem_Contig0   596779 9 -  4500979 AAGATTATT
i caeRem4.Crem_Contig0  C 0 I 515
s caeSp111.Scaffold630  5651314 9 + 20921866 ACAActgtt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e caeJap4.Scaffold18194  727540 554 -   823664 I
e cb4.chrX              8611508 1376 + 21540570 I

a score=326.000000
s ce10.chrX             3477822 24 + 17718866 TTTTAAATACAAATTTCTTGTGAT
s caeSp111.Scaffold630  5651323 24 + 20921866 ttctgattgaatTTGTTTCTTGAT
i caeSp111.Scaffold630  C 0 I 541
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e caeJap4.Scaffold18194  727540 554 -   823664 I
e cb4.chrX              8611508 1376 + 21540570 I
e caeRem4.Crem_Contig0   596788 515 -  4500979 I

a score=0.000000
s ce10.chrX             3477846 1567 + 17718866  
e caePb3.Scfld02_0      1892202  584 +  4147112 I
e caeJap4.Scaffold18194  727540  554 -   823664 I
e cb4.chrX              8611508 1376 + 21540570 I
e caeSp111.Scaffold630  5651347  541 + 20921866 I
e caeRem4.Crem_Contig0   596788  515 -  4500979 I

a score=545.000000
s ce10.chrX             3479413 15 + 17718866 ATTTATGTCTTGTAG
s caeJap4.Scaffold18194  728094 15 -   823664 atttatttatttaag
i caeJap4.Scaffold18194 I 554 C 0
e caePb3.Scfld02_0      1892202 584 +  4147112 I
e cb4.chrX              8611508 1376 + 21540570 I
e caeSp111.Scaffold630  5651347 541 + 20921866 I
e caeRem4.Crem_Contig0   596788 515 -  4500979 I

a score=-556.000000
s ce10.chrX             3479428 2 + 17718866 -AA
s caePb3.Scfld02_0      1892786 2 +  4147112 -AA
i caePb3.Scfld02_0      I 584 C 0
s caeJap4.Scaffold18194  728109 2 -   823664 ca-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8611508 1376 + 21540570 I
e caeSp111.Scaffold630  5651347 541 + 20921866 I
e caeRem4.Crem_Contig0   596788 515 -  4500979 I

a score=-664.000000
s ce10.chrX             3479430 16 + 17718866 --AATATACACAGTTTTC-
s caeRem4.Crem_Contig0   597303 16 -  4500979 --AATTCAAATCATTTCC-
i caeRem4.Crem_Contig0  I 515 I 2
s caePb3.Scfld02_0      1892788 16 +  4147112 --GATATCCACCGTGTCC-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194  728111 19 -   823664 taagtacagcttaattttt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8611508 1376 + 21540570 I
e caeSp111.Scaffold630  5651347 541 + 20921866 I

a score=47.000000
s ce10.chrX             3479446 3 + 17718866 -AAT
s caeRem4.Crem_Contig0   597321 3 -  4500979 -AAT
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold630  5651888 3 + 20921866 -AAC
i caeSp111.Scaffold630  I 541 C 0
s caePb3.Scfld02_0      1892807 3 +  4147112 -AAC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194  728130 3 -   823664 gaa-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8611508 1376 + 21540570 I

a score=149625.000000
s ce10.chrX             3479449 745 + 17718866  
s cb4.chrX              8612884 895 + 21540570  
i cb4.chrX              I 1376 I 60
s caeRem4.Crem_Contig0   597325 861 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 31
s caeSp111.Scaffold630  5651891 808 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1892810 827 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  728133 733 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-8919.000000
s ce10.chrX             3480194 27 + 17718866 CCAATAAGAACAAAAATATATATATGT
s caeRem4.Crem_Contig0   598217 27 -  4500979 TTGTCATCCTCTTAGTTCTATCACCAt
i caeRem4.Crem_Contig0  I 31 I 22
s caeSp111.Scaffold630  5652700 22 + 20921866 ctgtaaTCTTC-----CCTACATGTAT
i caeSp111.Scaffold630  I 1 I 19
s caePb3.Scfld02_0      1893638 12 +  4147112 CTAATAT---------------TGAAA
i caePb3.Scfld02_0      I 1 I 17
s caeJap4.Scaffold18194  728866 19 -   823664 -------cctcaaaaatctCCAATCT-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8613779 60 + 21540570 I

a score=95164.000000
s ce10.chrX             3480221 258 + 17718866 ATGCTG-------TTCTGTTTC--CAGAATGACAT---TACTCAACTTGTTTT--ATTGTTTCTGCCTACTATTTGGAGCAGTTTTGGCGGATTCCAT---TCATGATGGTGGATCTTGTGGTACGAATTCAATTCCTTACAAAATGGAAGTAGACAGCGAAGGAAAACCAGGTAT-----TTACTAATTTTCC--AGAGCATCTCAAA--AAATTATC---CATTTC--AGTTATATCATGTGAAGCGCCATCCTGCCTTGGAGTTTCAAGCTCTGCAGCAAGACGCC
s cb4.chrX              8613839 257 + 21540570 ATCCag-------ttgaacttt--cagaatgaGATTACTACTCAACTTGTGTCTGCCTTTTTGTATTCTTT--TCGCATCCGCAATCGCTGATTCCTA---TCATGACGGTGGATCATGTGGTACCAACTCCATTCCATATAAAATGGAAGTGGACAGTGACGGGAAGCCAGGT-------ACGGTAGTTctcg----attttctagaa--aaaagttt---cgttCC--AGTAATTTCATGCGAGGCACCATCTTGCTTGGGACTCACATCGTCGCTAAAATCTCGTC
i cb4.chrX              I 60 C 0
s caeRem4.Crem_Contig0   598266 262 -  4500979 attc----------tcaatttttacagGATGAAGT---TACTCAACTTGTGCT--ATTTGCTGTCTTCGTTACTAGCACTAACACTTGCCGAGGCGTA---TCATGACGGAGGATCCTGTGGAACCAATTCGATCCCTTACAAAATGGAAGTTGATAGTGAAGGAAAACCAGGTATCTATCACCCAAAGTCTC-----ATTATCTAAGA--atcaatttgaatatttc--agttaTATCTTGTGAAGCACCATCATGTTTCGGTATTTCATCGTCTCCGTCAAGTCGCC
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold630  5652741 261 + 20921866 attctga----aattttacttt--cagaatgaaaa---tacTCAACTTGAACA--TCTGTGTATTGATTCTCATCGGTGTTACCTTTGCTGAAGTTTA---CCATGACGGTGGATCTTGTGGTACTAACTCGATTCCATATAAAATGGAAGTAGATAGTGAAGGAAAGCCAGGT-------AGGCTAATTCCCA--CCAGTATATAGAAccaaagtttt---taattt--agtGATTTCGTGTGATACGCCGTCTTGTTTCGGAATCTCATCTTCACCGTCAAGTCGTC
i caeSp111.Scaffold630  I 19 C 0
s caePb3.Scfld02_0      1893667 260 +  4147112 attttg--------cttcattt--cagaatgaaaa---tacTCAGCTTGAACT--TATGTCTTTTATCCCTCATTGGTCTAACATTTGCGGAAGAAAACGTCCATGATGGCGGTTCTTGTGGGACCAACTCTATACCGTACAAAATGGAAGTTGACAGTGAAGGAAAGCCAGGT-------CAGCTTAAACTTG--AAAGTATCCGaaa--aattcttt---caattttcagtaatttctTGTGAAGCTCCATCTTGTTTCGGCATTTCCCAATCCAGATCAGGTCGTC
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194  728885 253 -   823664 ------TCCCTATATCAAATTT--CAG-ATGAAAT---TAACAaacttgtctt--------ttttcctGCTGGTCGGTCTCATCTCCGCTGACATCTA---CCATGATGGTGGATCTTGTGGAACCAACTCGATTCCCTATAAACTGGAAGTGGACAACGATGGAAAACCAGGT-------AATGAAAGCCCTTTACAACCATCTAATT--ATCATCATG--TTTTGC--AGTGATTTCTTGTGACGTTCCCGCTTGTTTTGGAGTCTCCCGGTCAACGTCAAGTCGTC
i caeJap4.Scaffold18194 C 0 I 741

a score=11973.000000
s ce10.chrX             3480479 22 + 17718866 CAAGAGTTTTGGATGTGGTGAG
s cb4.chrX              8614096 22 + 21540570 CTAGAGAATTGTCGGTGGTGAG
i cb4.chrX              C 0 I 276
s caeRem4.Crem_Contig0   598528 22 -  4500979 CAAGAGAATTGTCTGTGGTGAG
i caeRem4.Crem_Contig0  C 0 I 308
s caeSp111.Scaffold630  5653002 22 + 20921866 CACGAGAACTGTCTGTTGTGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1893927 22 +  4147112 CACGAGAGTTGTCTGTTGTAAG
i caePb3.Scfld02_0      C 0 I 297
e caeJap4.Scaffold18194  729138 741 -   823664 I

a score=406.000000
s ce10.chrX             3480501 14 + 17718866 AGATACTTGAAAGA
s caeSp111.Scaffold630  5653024 14 + 20921866 TTATAtataaaaga
i caeSp111.Scaffold630  C 0 I 221
e caePb3.Scfld02_0      1893949 297 +  4147112 I
e caeJap4.Scaffold18194  729138 741 -   823664 I
e cb4.chrX              8614118 276 + 21540570 I
e caeRem4.Crem_Contig0   598550 308 -  4500979 I

a score=0.000000
s ce10.chrX             3480515 642 + 17718866  
e caePb3.Scfld02_0      1893949 297 +  4147112 I
e caeJap4.Scaffold18194  729138 741 -   823664 I
e cb4.chrX              8614118 276 + 21540570 I
e caeSp111.Scaffold630  5653038 221 + 20921866 I
e caeRem4.Crem_Contig0   598550 308 -  4500979 I

a score=336.000000
s ce10.chrX             3481157 39 + 17718866 TGATTATACATCCCGAATGTGTCTTGTTTG----------AATGTAAGG
s caeSp111.Scaffold630  5653259 49 + 20921866 TAATTATTCCCTCGGACCGTTTCTAGTTTGTTTCTAGATCAATGTTTTT
i caeSp111.Scaffold630  I 221 C 0
e caePb3.Scfld02_0      1893949 297 +  4147112 I
e caeJap4.Scaffold18194  729138 741 -   823664 I
e cb4.chrX              8614118 276 + 21540570 I
e caeRem4.Crem_Contig0   598550 308 -  4500979 I

a score=180.000000
s ce10.chrX             3481196 1 + 17718866 A
s cb4.chrX              8614394 1 + 21540570 a
i cb4.chrX              I 276 C 0
s caeRem4.Crem_Contig0   598858 1 -  4500979 a
i caeRem4.Crem_Contig0  I 308 C 0
s caeSp111.Scaffold630  5653308 1 + 20921866 G
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1893949 297 +  4147112 I
e caeJap4.Scaffold18194  729138 741 -   823664 I

a score=46543.000000
s ce10.chrX             3481197 250 + 17718866 TGTTTCTTTCACCCATTAAGCTTTA-----CGATCTTTGAGACTTATCCAATTAAAGTGGC------TAACTGAATCTTCGCCCGATTCGTCT--CGGCCGAAG-----CCTATTCA-T------CTTTTTTGA------TGTTCCTATTT-TAATTGTGAC----GACGTCA-AGC------GTACCA----AACAAGCTACGTATGCAAGCCAATTAATTGCGA----TG-C----GAGATTAGAAGTACATGAAACACTATGACCGGAATC---GTTCC--TCCGGATGAGTCGTCGTTGACCGAAAA
s cb4.chrX              8614395 249 + 21540570 tgtttcattAGTCCATTAGAGCGTCTCAGCTGATCTTTGAGACATAGCAAATTAA------------TCTAGAa----------tgtttcttctctttttgatG-----CTTATTCA-TCATCTGCTGCTTTAATG--CGTTCTCTGCCTTCTAATTGTGTC----CATGTCA-AGA------ATATAC--------------GTAAGCAAGCAAATTAATTGACG-GTGCG-CATCGGCGATCAAAAGTGCATGAAACTGGATGACCGGAACT---GTCCGCGTGTGTGTGTAC--TTCTTGGTCGAAAA
i cb4.chrX              C 0 I 74
s caeRem4.Crem_Contig0   598859 254 -  4500979 tgtttcatcAATCAATTAAACAAGCT-GCCCGATCTTTGAGACATACCCAATTAGAACACCGGCT--TCACCGA----------TATTTTGCCGATATTTGACTGTAGctttattca-t------cttttttga----cgTCTCTTCCTTTCTAAATGTGAT----CTCATCG-AGC------GTATAAATGAA------GAGGTAGGCAAGCAAATTAATTGAcgcgcgcg-c----gcgATCAGAAGTACATGAAACAGGATGACCGGAACT---GTCCA-----GGACATAC---GCTTGACCAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5653309 256 + 20921866 CGTTTTCTTTATCCATTAGGCTATCG----TGATCTTTGAGACGTATCCAATTAGAACATCGGACT-TCGCTGAATGTT--TCCGATTTCTTC--TAACCGAAG-----CTTCTGCgtt------cttttttga----tctatTATTCTTT-TAATTGTGACGACGCATAGCGTGGCagcaaaataaaa----a------gacgtatgcaagaaaatgaattgacg----CG-T----GCGATCAAAAGTACATGAAACAGGATGACCGGAACT---GGCCG-----GGATATGT---ACTTGACCGTATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1894246 247 +  4147112 tgtttctttcctcCATTAGCTTGTC-----CGATCTTTGAGGCTTACCCAATTAGAAAGGCGGCTTCTCGCTGAAT--------GATTTATTC--TCTCCGCAG-----cttattca-t------cttttttgatgtcTTTATTTTGCTTT-TAATTGTGAT----CAAGATGTAGC------ATATGC----A------TACGTAGGCAAGCAAATTAATTGCCG----CGCT----GCGATCAGAAGTACATGAAACTGGATGACCGGAACTACAGTCCG-----AGATATAC---ATGTGTCCATATA
i caePb3.Scfld02_0      I 297 C 0
e caeJap4.Scaffold18194  729138 741 -   823664 I

a score=-3729.000000
s ce10.chrX             3481447 32 + 17718866 AACTTTTGGCGGGCGTAGTATA----ATAAAACTT------G
s caeRem4.Crem_Contig0   599113 27 -  4500979 ------------GCGACGCGTT---CGTCAAATATAATGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5653565 24 + 20921866 ------------ACCCAGTGTTCGCCAATGAACCT------T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1894493 28 +  4147112 ------------GCatagtttt--ccgaaaaacataATGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  729138 741 -   823664 I
e cb4.chrX              8614644 74 + 21540570 I

a score=-486.000000
s ce10.chrX             3481479 11 + 17718866 ATTGA---ATGATG-
s caeRem4.Crem_Contig0   599140 14 -  4500979 TACGAAGTGTGACG-
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5653589 11 + 20921866 TTTGA---GTGATG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1894521 11 +  4147112 TTTGA---GTGATG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  729879 11 -   823664 -ATTA---AAAacag
i caeJap4.Scaffold18194 I 741 C 0
e cb4.chrX              8614644 74 + 21540570 I

a score=240350.000000
s ce10.chrX             3481490 287 + 17718866 TATAGCATTGGAAT--ATTTTTCCAGAGTTGCGACCCTTTCAAGGAGATTGTCTGCGTCAAAGACCTGCAATGGACTTCTGGGCTTGTGGAAATCAATAACGGAACACATAGAACA------------------------------------------------TTGAAAACCGAGTGTTGTTCGTACGAAGGAATGTCTGATGCGAAAACAATCAAGAGCATCTTCCTTGGACCAGGACAATCGTTTGTAGGAGGAATGGTGGAAAAGGATGGAGAGCAATCAGGATTCGATCTTATCAAGGAGATTAGGAAGACTGTCAACGCAGATAATCAGTA
s cb4.chrX              8614718 287 + 21540570 TACAAtattctatt--tcttttttagagCTGCGATCCATTCAAGGAGGTTGTTTGTGTGGACGAACTACAATGGACTTCTGGATTAGTGGAGATTAATAATGGAACACATAGAACA------------------------------------------------TTAAAAACCGAGTGCTGTTCTTACGAAGAAATGGCGACTGCTAAGAATGTCAAAAGCATCTTCCTAGGTCCCGGACAATCTTATGTTGGAGGGCTTGTAGAGAAAGATGGAGAAGAATCAGGATTCGATTTGATCAAAGAGATCAGAAAAACTGTGAACGCCGATAATCAGTA
i cb4.chrX              I 74 I 4
s caeRem4.Crem_Contig0   599159 278 -  4500979 TATGAGATTTTA-----------CAGAGCTGTGATCCATTCAAAGAAGTTGTATGTGTGGATGAACTTCAATGGACTTCGGGACTTGTTGAAATAAACAATGGAACTCATAGAACG------------------------------------------------TTGAAAACTGAATGTTGTTCTTATGAAGGAATGACAACAGCCAAAAACGTAAAAAGCATTTTCCTCGGTCCCGGACAATCGTACGTTGGGGGTTTGGTTGAGAAAGATGGCGAAGAATCTGGATTTGATCTTATCAAGGAGATcagaaaaactgtgaatgcagACAATCAGTG
i caeRem4.Crem_Contig0  I 5 I 4
s caeSp111.Scaffold630  5653600 289 + 20921866 TATGGGATTCTAAGAATATATTTCAGAGTTGCGATCCATTCAAAGAAATCGTATGTGTTGATGACCTTCAATGGACTTCAGGTCTTGTGGAAATTAATAATGGAACTCAcagaact------------------------------------------------ttgaaaactgaGTGTTGTTCTTATGAAGGAATGACATCTGCCAAAAATGTCAAGAGTATTTTCCTTGGTCCTGGACAATCTTATGTTGGAGGTTTGGTTGAAAAAGATGGTGAAGAAGCTGGATTTGATCTCATCaaggaaattagaaaaactgTGAACGCTGACAACCAGTA
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_0      1894532 287 +  4147112 TATGGTAT--GAGAGAAATGTTCCAGAGCTGCGATCGATTCAAAGAAGTGGTATGTGTGGATGACCTTCAGTGGACTTCAGGACTGGTGGAAATTAATAATGGAACACATCGAACA------------------------------------------------TTGAAAACTGAGTGCTGTACATACGAAGGAATGTCCTCTGCTAAGAATGTCAAGAGTATCTTCCTCGGTCCAGGACAATCTTATGTTGGAGGTCTAGTGGAGAAGGACGGAGAAGATTCTGGATTCGATCTTATcaaggaaatcagaaaaactgtgAATGCCGACAACCAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  729890 334 -   823664 gataatttttgaa---aattcttcaGAGCTGTGACCCATTCAAAGAAGTCGTTTGTGTAGATGACCTTCAATGGACTTCTGGTCTTGTTGAAATCAACAACGGAACTCATAGAACGTTAGGATATAAGTTtgattgacaaaaaatgctattaaaaaatttaagtttGAAAACCGAATGCTGTTCCTACGAGGGAATGACGTCTGCTCAAAACGTGAAGAGCATTTTCCTCGGTCCTGGAGAATCCTATGTTGGAGGGCTTGTGGAGAAAGATGGAACAGAAGGAGGGTTTGATTTGATCAAGGAAATTCGCAAAACAGTGAATGCTGACAACCAGTA
i caeJap4.Scaffold18194 C 0 C 0

a score=-2233.000000
s ce10.chrX             3481777 3 + 17718866 --AGA
s cb4.chrX              8615009 3 + 21540570 --AAT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   599441 3 -  4500979 --CAA
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      1894819 3 +  4147112 --AGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  730224 3 -   823664 TGA--
i caeJap4.Scaffold18194 C 0 I 31
e caeSp111.Scaffold630  5653889 26 + 20921866 I

a score=-4279.000000
s ce10.chrX             3481780 30 + 17718866 GAAATTTAAATGATCGGGTATTTTTGGAAC-
s cb4.chrX              8615012 20 + 21540570 GAGCTCTG-----------ATGTTTTAAAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   599444 18 -  4500979 TAACTT-------------GTTCCTAGAGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1894822 24 +  4147112 TTACTTTGGTATA------GTTCATTCAAC-
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194  730227 31 -   823664 I
e caeSp111.Scaffold630  5653889 26 + 20921866 I

a score=-1331.000000
s ce10.chrX             3481810  7 + 17718866 --AAAGT--TT
s cb4.chrX              8615032  7 + 21540570 --ATCGT--TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   599462  7 -  4500979 --AACAA--TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5653915 11 + 20921866 aaaattcaatt
i caeSp111.Scaffold630  I 26 C 0
s caePb3.Scfld02_0      1894848  9 +  4147112 ACAATGC--TG
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194  730227 31 -   823664 I

a score=49552.000000
s ce10.chrX             3481817 74 + 17718866 CTTATTTCAGAGTTCAATATATTGTTGGTGTCTACCGCATGCCTTGTGAAGCCACCTCCGATTCAAGTAAATTT
s cb4.chrX              8615039 70 + 21540570 ----TTCCAGGGTACAATACATTGTTGGAGTTTACCGTATGGTGTGTAACGCACGTTCTGACTCAAGTGAGCCC
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   599469 73 -  4500979 -TGATTTCAGAGTTCAATACATTGTCGGAGTGTACCGTATGGTCTGCAATGCCCCATCTGACTCTAGTGAGACA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5653926 66 + 20921866 ----tttcagagttcaaTACATTGTCGGTGTTTATCGAATGATTTGCAATGCGC---CTGATTCAAGT-AGTTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1894857 70 +  4147112 ----TTTCAGAGTACAATATATTGTTGGCGTATACCGTATGGTTTGCAATGCCCCATCTGGTTCAAGTGAGCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  730258 74 -   823664 CATTTTTCAGGGTTCAATACATTGTTGGAGTCTACCGAATGTCCTGTACCGCACCATCTTACTCAAGTAACCAA
i caeJap4.Scaffold18194 I 31 C 0

a score=-2038.000000
s ce10.chrX             3481891 6 + 17718866 -TTTGAA
s caeRem4.Crem_Contig0   599544 5 -  4500979 -attga-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5653992 6 + 20921866 -TTTGTC
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_0      1894927 6 +  4147112 -CTTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  730332 6 -   823664 CACAGA-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8615109 33 + 21540570 I

a score=-5371.000000
s ce10.chrX             3481897 35 + 17718866 ATTTTGAAATATTTT---TGCAATTTTAAGCTTCACTG
s caeRem4.Crem_Contig0   599549 30 -  4500979 at----aaatatttttcctgCAACTTGTAATTAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1894933 26 +  4147112 ------AGCTGGTTTACTTTCATAAAGTAGTT------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  730338 24 -   823664 ------GTTTCTCTTATCTTTACAGCACAC--------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8615109 33 + 21540570 I
e caeSp111.Scaffold630  5653998 24 + 20921866 I

a score=91.000000
s ce10.chrX             3481932 1 + 17718866 T
s caeJap4.Scaffold18194  730362 1 -   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1894959 1 +  4147112 I
e cb4.chrX              8615109 33 + 21540570 I
e caeSp111.Scaffold630  5653998 24 + 20921866 I
e caeRem4.Crem_Contig0   599579 0 -  4500979 C

a score=1168239.000000
s ce10.chrX             3481933 1670 + 17718866  
s cb4.chrX              8615142 1722 + 21540570  
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   599579 1684 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5654022 1685 + 20921866  
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      1894960 1710 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  730363 1627 -   823664  
i caeJap4.Scaffold18194 C 0 I 92

a score=17800.000000
s ce10.chrX             3483603 33 + 17718866 TCACTGTCGCCTTGCCATGTTGT--AAAATAAACA-
s cb4.chrX              8616864 33 + 21540570 TCACTGTCACCCTGCCATGTTTTAAGAAACGAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   601263 33 -  4500979 TCACTGTCACCCTGccatgtttt--gaaataaaca-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5655707 34 + 20921866 TCACTGTCAACATGCCatgtttt--aaaataaacaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1896670 34 +  4147112 TTACTGTTGCCTTGccatgtttt--gaaataaacta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  731990 92 -   823664 I

a score=-2718.000000
s ce10.chrX             3483636 70 + 17718866 TAACTTATTGAGTA---CAAACACTTTATGTTTCC------TTATTTTGCTTTCCATTTTCAGAGCCTAC------------AAAAAATAA
s cb4.chrX              8616897 87 + 21540570 TAAACGATGAATCTGtgcaaaaagttt---tttttgtcttgttgCTTCAAatgtc-ttttcaaaatctatacatttcaaaacaaaaaataa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5655741 69 + 20921866 tgtattatgatttt---caaacacttt---ttctc------ttgtttccattac---ttttaaaatcattattct-------aaaaaataa
i caeSp111.Scaffold630  C 0 I 81
s caePb3.Scfld02_0      1896704 43 +  4147112 t-----------------AAATACTCT---TAACT------TTATCTCCatcac-------aaattc---------------aaaaaacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  731990 92 -   823664 I
e caeRem4.Crem_Contig0   601296  0 -  4500979 C

a score=38.000000
s ce10.chrX             3483706 1 + 17718866 G
s cb4.chrX              8616984 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1896747 1 +  4147112 g
i caePb3.Scfld02_0      C 0 I 2431
e caeJap4.Scaffold18194  731990 92 -   823664 I
e caeSp111.Scaffold630  5655810 81 + 20921866 I
e caeRem4.Crem_Contig0   601296 0 -  4500979 C

a score=160.000000
s ce10.chrX             3483707 3 + 17718866 Gta
s cb4.chrX              8616985 3 + 21540570 gca
i cb4.chrX              C 0 I 1053
e caePb3.Scfld02_0      1896748 2431 +  4147112 I
e caeJap4.Scaffold18194  731990 92 -   823664 I
e caeSp111.Scaffold630  5655810 81 + 20921866 I
e caeRem4.Crem_Contig0   601296 0 -  4500979 C

a score=0.000000
s ce10.chrX             3483710 2261 + 17718866  
e caePb3.Scfld02_0      1896748 2431 +  4147112 I
e caeJap4.Scaffold18194  731990   92 -   823664 I
e cb4.chrX              8616988 1053 + 21540570 I
e caeSp111.Scaffold630  5655810   81 + 20921866 I
e caeRem4.Crem_Contig0   601296    0 -  4500979 C

a score=767.000000
s ce10.chrX             3485971 91 + 17718866 TTTTTATAAAATTAACAATTCCTGAGAAATTATCAAAACATTTTTAAAAAATGTCTTTTTTTCTATAATCTTGGTGTTTGCGAAACACATG
s caeRem4.Crem_Contig0   601296 67 -  4500979 tttttataatatAAACAACTTCT------TTAGC--------CTTGGAGA-----TTTTCTTTTACAA----GTagtttgctgaaaa-atg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1896748 2431 +  4147112 I
e caeJap4.Scaffold18194  731990 92 -   823664 I
e cb4.chrX              8616988 1053 + 21540570 I
e caeSp111.Scaffold630  5655810 81 + 20921866 I

a score=-951.000000
s ce10.chrX             3486062 23 + 17718866 --------GTACTTTGAAAGTGCGTATTGCC------
s caeRem4.Crem_Contig0   601363 37 -  4500979 aaaccttAATGGTTTCAGTACGAGTTGCATCATATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5655891 23 + 20921866 --------GCACTTTCAAAGTACTTTTCCTC------
i caeSp111.Scaffold630  I 81 C 0
e caePb3.Scfld02_0      1896748 2431 +  4147112 I
e caeJap4.Scaffold18194  731990 92 -   823664 I
e cb4.chrX              8616988 1053 + 21540570 I

a score=1580.000000
s ce10.chrX             3486085 8 + 17718866 AACCGAAG
s caeRem4.Crem_Contig0   601400 8 -  4500979 AACTAGAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5655914 8 + 20921866 GACTAAAG
i caeSp111.Scaffold630  C 0 I 5
s caeJap4.Scaffold18194  732082 8 -   823664 AATCAAAC
i caeJap4.Scaffold18194 I 92 C 0
e caePb3.Scfld02_0      1896748 2431 +  4147112 I
e cb4.chrX              8616988 1053 + 21540570 I

a score=1537.000000
s ce10.chrX             3486093 3 + 17718866 TTA
s caeRem4.Crem_Contig0   601413 3 -  4500979 TCG
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5655927 3 + 20921866 TTG
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      1899179 3 +  4147112 TTG
i caePb3.Scfld02_0      I 2431 C 0
s caeJap4.Scaffold18194  732090 3 -   823664 TTA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8616988 1053 + 21540570 I

a score=117398.000000
s ce10.chrX             3486096 292 + 17718866 TTCGAAACAATTG-----TTTCATG----TAAAATCCACGTTTTCGTAACATGTACACGATATATGTAATTCGAGTCG-------------GTTTTCAGTGTTT--GAA--AAGAACTGACCGAG----TGTTACAAAACA-TGTCTTCTCGTTTT-TGTGTCAGACGACATAGA-GAATGAGATATATATTCAGGACACCC---CATATCATTTACCTTTGCCG--------------CG-ACCCTGTTTTAGTGCA----------------AACTCTC--TTTTT-----CCTCTCTTTCTTGCTCTTTCTTGCTTGTCTTTAATGTTGACCTTTTGTCATTTGGTCCCAATTTT----------------------------GATCTTTT
s cb4.chrX              8618041 313 + 21540570 TTAAAAACTTATG-----TTTCATGTACATAGAATCCACGTTTTCGTAACATGTACACGATATATGTAATCCGAGTCGTGGAGGGCCCCCAATTCCAAGTGTTTTGAGA--AGAAACTGACCGAG----TGTTACAAAACATTGTCGTCTCAAATT-TGTGTCAGACGACGACAACGGATTGC--CGCTCGGCAAGTCTCGG---TATAT-------TCTTACCT--------------CA-ATTCTGTTTTAGTGCACGGGGGAGCTCTTCTTCAGCCTC--TTCTTGCCACTCTCATCT-----CCCTTTCT--CTTATC-----GGTTGACCTTTTGTCATTTGGTCCCAATTGT----------------------------TGCTTCTT
i cb4.chrX              I 1053 C 0
s caeRem4.Crem_Contig0   601416 259 -  4500979 TTCGAAAGCTATG-----TTTCATG----TAAAATCCACGTTTTCGTAACATGTACACGATATATGTAATCTGAGTAG-------------ATCTCCAGTGTTT--GAA--AAGAACTGACCGAG----TGTTACAAAACA-TGTCGTCTCATTTTGTGTGTCA---GACgagaaaagataag--aaataTTCAGGTTACTC---AATAT-------CTTTACCT--------------CAGAACCTCTTTTAGTGca----------------caatttc--tttct-----tctcattt-----ctc-------------------gtTGACCTCTTGTCATTTGGTCCCAATTGT----------------------------TGCTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5655930 282 + 20921866 TTC-GCAGCAATG-----TTTCATG----TAAAATCCACGTTTTCGTAACATGTACACGATATATGTAATTCGAGTAG-------------GTCTCCActgttt-gaaaagaaaaactgaccGAG----TGTTACAAAaca---tcttctcatttt-tgtgtCAGACAACAAGAG-AGATAAG--ATATATTCAGGTTACCCCCGTATAT-------CTTTACCT-----CAC------CA-ACCCTGTTTTAGTGca----------------caa------tttct-----tctc-------------------------------attgaCCTCTCGCCGTTTCGTTCCAGTTGTTCTTTTCCCGttttcacttgcgttttgtcgtatttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899182 264 +  4147112 TTCTGAAGGTATG-----TTTCATG----TAAAATCCACGTTTTCGTAACATGTACACGATATATGTAATCCGAGAAG-------------GTCTCcaggtttt-gaaa--acgaacTGACCGAG----TGTTACAAaaca---tcttctcatttt-tgtgtcAGACGACAAGAG-AGATAAG--ATATATTCAGGTTACCC---TATAT-------CTTTGCCT--------------CA-GCCCTGTTTTAGTgca----------------caatttcattttct-----tctc-------------------------------gttgACCTCTTGCCACTCAGCTTTCATTGT-----------------TGAAGTATTCCCCTATTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  732093 270 -   823664 CTAGAAAATAAAGGACATTCTGATGTACATGAAATCCACGTTTTCGTAACAACTTCACGTTGAATGAAATATGAGCAG-------------A--------GTTG--GAA--AAGAACTGACCAAGTATTTGTTACAAGGCA-CATCTTTCATTTTC-TGTCCAAGA-GTCGACAG-AGACAAA----ATATTCCGGTTATTC---TATAT-------CtttttttATCTTCACAAGAGTCT-GGCTTGGTTTAGTGCA----------------CACGACG--TTTTA-----CTTCAG-----------------------------GTTGACCTCTTGTCATTTGGCCCCAATTGT----------------------------TGCCTTTT
i caeJap4.Scaffold18194 C 0 I 390

a score=525.000000
s ce10.chrX             3486388 3 + 17718866 TGA
s cb4.chrX              8618354 3 + 21540570 CTA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   601675 3 -  4500979 CGA
i caeRem4.Crem_Contig0  C 0 I 378
s caeSp111.Scaffold630  5656212 3 + 20921866 tca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899446 3 +  4147112 CCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  732363 390 -   823664 I

a score=-7041.000000
s ce10.chrX             3486391 74 + 17718866 AAAAAGATGAATG-----------------------AATCCAGACA-------TTTTTCTTTGCGATTT----GATTTTTTGTTTTGTTTTTCGATTAGGTTTCTCCT
s cb4.chrX              8618358 74 + 21540570 ---GTGACGGATGGTGGGTCTTTGAGGGGTTTTTCTCTACTAGACAGGA----TATTTTCTTG----------CCTCtcggggtttttttt-----------------
i cb4.chrX              I 1 I 513
s caeSp111.Scaffold630  5656215 69 + 20921866 ------------------------------------acttctgacaaaattcttcttttcttg---ttttttgtcttgatcaattgatttcaagAGCAAGGTTCAGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899449 57 +  4147112 ---------------------------------------CCAGACAaga-----attttgttg---ttt----tcttccccagttgattttcagaacaaggTTCAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  732363 390 -   823664 I
e caeRem4.Crem_Contig0   601678 378 -  4500979 I

a score=4914.000000
s ce10.chrX             3486465 68 + 17718866 GGA-----------------AAAAACATATCAGAAGGTCCCATTGATA-ACATTGTGACGTATTATGTTTTGCAATTT--TTTTCTTC--
s caeSp111.Scaffold630  5656284 79 + 20921866 AGATGgtaagaaagaaagagagaaaaacttgaCAAGGTTCAATTGATATATCTTCTGACGTCtgctttttc---------ctttcttt--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899506 90 +  4147112 AGAtggtaagaaaaaagagaaaaaaaaattgacagggTCCAAGTGATATATCTTCTGACGTCTGgtttttctcattctatttttctctcc
i caePb3.Scfld02_0      C 0 I 188
e caeJap4.Scaffold18194  732363 390 -   823664 I
e cb4.chrX              8618432 513 + 21540570 I
e caeRem4.Crem_Contig0   601678 378 -  4500979 I

a score=390.000000
s ce10.chrX             3486533 127 + 17718866 GAAATAAACATCGGATACTTTGGGTTTTGTTCCTCCCAAATAGTTTTTGATAATTTAGGCTGAACT------AAAATCAATTTTCAAAAATTGAAAGATACATAAAATCAATTGATGTCAGCAAATATTTTTT
s caeSp111.Scaffold630  5656363 119 + 20921866 taaTCAAGGA--GGTCTCactaggttttttttct-----aagctCTCCTATAGTAGGGAATGAACttttgcaagaaaaagttttgaaagg--aaaagcaagataaaat---ttgaaa--aacaaacttttttt
i caeSp111.Scaffold630  C 0 I 81
e caePb3.Scfld02_0      1899596 188 +  4147112 I
e caeJap4.Scaffold18194  732363 390 -   823664 I
e cb4.chrX              8618432 513 + 21540570 I
e caeRem4.Crem_Contig0   601678 378 -  4500979 I

a score=0.000000
s ce10.chrX             3486660 916 + 17718866  
e caePb3.Scfld02_0      1899596 188 +  4147112 I
e caeJap4.Scaffold18194  732363 390 -   823664 I
e cb4.chrX              8618432 513 + 21540570 I
e caeSp111.Scaffold630  5656482  81 + 20921866 I
e caeRem4.Crem_Contig0   601678 378 -  4500979 I

a score=459.000000
s ce10.chrX             3487576 7 + 17718866 ACGAAAC
s caeSp111.Scaffold630  5656563 7 + 20921866 ACGcaac
i caeSp111.Scaffold630  I 81 C 0
e caePb3.Scfld02_0      1899596 188 +  4147112 I
e caeJap4.Scaffold18194  732363 390 -   823664 I
e cb4.chrX              8618432 513 + 21540570 I
e caeRem4.Crem_Contig0   601678 378 -  4500979 I

a score=185.000000
s ce10.chrX             3487583 6 + 17718866 CTTTTT
s cb4.chrX              8618945 6 + 21540570 ctttta
i cb4.chrX              I 513 C 0
s caeRem4.Crem_Contig0   602056 5 -  4500979 -CTTTC
i caeRem4.Crem_Contig0  I 378 C 0
s caeSp111.Scaffold630  5656570 6 + 20921866 aatctg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1899596 188 +  4147112 I
e caeJap4.Scaffold18194  732363 390 -   823664 I

a score=12958.000000
s ce10.chrX             3487589 69 + 17718866 --AAAACACTCTAGTCATTC------CAAAAAGTTACAAATAACAGCAACACAA-TAAGTGATTGA--TGTGACGATACC
s cb4.chrX              8618951 58 + 21540570 gaaatttac------AATTCATCCCAAAATCACTC------------TAACAGA-TAAATGATTGATGTGTG-CGC--TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   602061 56 -  4500979 GAAAACTACTCTAGTAATTC------AAAACATTG------------AACAAGA-TAAATGATTGA--TGTG-CGC--TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5656576 54 + 20921866 --aaaatactctagtcattc------aaaacattg------------aacaaga-gaaatgattga--tGTG-CGC--TC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899784 58 +  4147112 --aaaatattctagtTATTC------AAAACAACGA-----------AACAAGATGAAATGATTGA--TGTg-cgctttt
i caePb3.Scfld02_0      I 188 C 0
e caeJap4.Scaffold18194  732363 390 -   823664 I

a score=93608.000000
s ce10.chrX             3487658 360 + 17718866  
s cb4.chrX              8619009 405 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   602117 363 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5656630 358 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1899842 349 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  732753 417 -   823664  
i caeJap4.Scaffold18194 I 390 I 132

a score=-19768.000000
s ce10.chrX             3488018 123 + 17718866 CAAAGG--GATTAGTA----GCAGTAATATTATAC-ACGCATT-AGAACTTTGAACA----AAAA----------ACAACGTTTTTCTTTTT---------------TGGTTTCGAGATTCAAGATTAAATA---GAAAATAATTT------------AAAACAGTTACAGC---AGA
s cb4.chrX              8619414 136 + 21540570 --AGTG--GATTATGACTA--------TATTGTACAACATGTC-AAAGATTAGAG--TTTG--------------GCAACTTTTGACTtgctttttgaagtttcc--ttCTCTTTCGATACACATtc--------aaagataatttttttgtctc---caatcaatttcaaacctgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   602480 158 -  4500979 -AAGTGAAGATTAGAATTAGAGATTAGTATTATGCAACATGTC-AAAAAATATagcatttgaaaa--tagaaaaagcaGTGATATTTTTGTGCTGTcgattttct--ttctcaaaatacacacgtttttaactgaaaaaatagt--------------agGTCAAGTAGAGTAGTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5656988 149 + 20921866 CAATGG--GATTAGAA--------------TAtacaacttttcaaaaaatgtgaacatttcaaagatgaaattgtatatatttttctgttgtttgtTAGGAAACT--ACTTTTCGATTTgcatgtttt-------caaaattactttttcatatCTCGAGTGGTAgataaat----ga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1900191 144 +  4147112 CAAGAG--GATTAACA--------------TATACAACTTTTC-AAAGATGAGAACAATTCAATG--tatctttttcacttttttctgtgttctcCGGGAAAACTACACTTTTTGACATGCATGTT----------Actatgattttttcgaa-----agttgtaGTAAAATAGTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  733170 132 -   823664 I

a score=207302.000000
s ce10.chrX             3488141 288 + 17718866 C-----GAATAAGCACTAGGTGGTA--GCATTAATCA--TCAGAAATGCCAATGTGTCATGGCACC-ACATACAAACTCGA-CGATATATCCAAGTTGTCAGAACACGTCAGCTGACATTC-------------------GGGTTCGTAGCGAAAAGAGACCTTCTAGT------GTGCGGA-GTGGCAGAGAG----CGTCTATGGGCCATTTTCAC-GGCCGATTTGCAGGTGTC-AACCGCAGATTTATCAAAATCTGAATGTTGTTTCTGAGGTCTTCCTT--------------ACAAATTTCTATCCGGA------------TTT--------C--------A-----CATTTGGTTCCAATTTTCTC--TCTT
s cb4.chrX              8619550 336 + 21540570 a------aataatcaCTGGGTGGTATTGCATTAATCATCTC--GAATGCCAATGTGTCATGGCATAGGCATACAAACTCGA-CGATATATCCTAGTTGTCAGAACACGCCAGCTGACGTTCAGTGAGAGAAACGATAGGGAGGTTTGTAA-GAAAAGAGACCTTTTAGTATGGCGGTGAGGA-GACACCGAGAGAGATAGTCTATGGGCCATTTTCTCGGGGCGATTTGCAGGTGTC-AACCGCAGATTTATCAAAATCTGAATGTTGTTTCAGTGGTTATACTCATTTTCtttattgaaaaagttca--TGAGTC-----GGTG---TTT--------C--------------CATTTGTTTCCAATTTGCTCATTcgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   602638 306 -  4500979 ACGATCGAATAATGACTAGGTGGTA--GCATTAATCA--TC--GAATGGCAATGTGTCATGGCATC-GCATACATACTCGA-CGATATATCCTAGTTGTCAGAACACGTCAGCTGACGTTC------------------GGAGTTTGTAA-GAAAAGAGACCTTCTAGT------GAGCGGA-GAAACAGAG------CGTCTATGGGCCATTTTCTC-GGGCGATTTGCAGGTGTC-AACCGCAGATTTATCAAAATCTGAATGTTGTTTCTG-GTTTCCACTC--------------GGAAGTTCATTTGAGTC-----GGTGGAATTT--------CTGAA----ACGATTCATCTGTTTCCAATTTATGCATTCtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5657137 308 + 20921866 a-----gaataatCAGTAGGTGGTA--GCATTAATCA--TCA-AAATGCCAATGTGTCATGGCATC-GCATACAAACTCGA-CGATATATCCAAGTTGTCAGAACACGCCAGCTGACGTTC------------------ATAGTTTGTAA-GAAAAGAGACCTTCTAGT------GAGCGGA-GAAACAGAG------AGTCTATGGGCCATTTTCTC--GGCGATTTGCAGGTGTC-AACCGCAGATTTATCAAAATCTGAATGTTGTTTCTG-GCTTCC-------------------AAAGTTCATATGAGtcaagaaaatggaatttgcCCTATTCCTAATCGca-----catttgttttcaatttactcattctt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1900335 304 +  4147112 A-----GTATAATCACTAGGTGGTA--GCATTAATCA--TC--GAATGCCAATGTGTCATGGCATC-GCATACAAACCCGA-CGATATATCCAGGTTGTCAGAACACGGCAGCTGACGTTC------------------AGGGTTTGTAA-GAAAAGAGACCTTCTAGT------GTGCGGA-GAAACAGAG------AGTCTATGGGCCATTTTCTC-GGGCGATTTGCAGGTGTC-AACCGCAGATTTATCAAAATCTGAATGTTATTTCTG-ACTTCCTCTC--------------GGAAGTTCGTATGAGTCAAG-AAATGGAGTTT----TGTCCTTAG----A-----CATTTGTTTCCAATTTActcattctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  733302 280 -   823664 -----CGATTGACCACCGGGGTGAA--GAATTAATCA--TC--AAATTCCAATGTGTCATGGCAT--ACATACAAACTCGACCGATATATCCAAGTTGTCAGAACACGCCAGCTGACGTTC--------------------GGTTCGTAA-GAAAAGAGACCTTCTCGT------GTGCAGAGGGAACAGAG------AGTCTACGGGGCATTTTCTT----CGTTGTGCAGGTGTCAAACCGCAGATTCAT-AAAATCGGAATGTTCCTTC---GTTTCCTCTT---------------TGAGTAGTTATGAgta-----agtatg-ttt-----------------------tatttggGTCc-gtttatctatttt-
i caeJap4.Scaffold18194 I 132 I 129

a score=-51826.000000
s ce10.chrX             3488429 667 + 17718866  
s cb4.chrX              8619886 419 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   602944 382 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5657445 349 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1900639 555 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  733582 129 -   823664 I

a score=291530.000000
s ce10.chrX             3489096 605 + 17718866  
s cb4.chrX              8620305 619 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   603326 541 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5657794 539 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1901194 546 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  733711 541 -   823664  
i caeJap4.Scaffold18194 I 129 C 0

a score=1820.000000
s ce10.chrX             3489701 2 + 17718866 TT
s cb4.chrX              8620926 2 + 21540570 TT
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold630  5658333 2 + 20921866 TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1901740 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18194  734252 2 -   823664 tt
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   603867 0 -  4500979 C

a score=273.000000
s ce10.chrX             3489703 1 + 17718866 T
s caeSp111.Scaffold630  5658335 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  734254 1 -   823664 t
i caeJap4.Scaffold18194 C 0 I 55
e caePb3.Scfld02_0      1901742 23 +  4147112 I
e cb4.chrX              8620928 0 + 21540570 C
e caeRem4.Crem_Contig0   603867 0 -  4500979 C

a score=-699.000000
s ce10.chrX             3489704 4 + 17718866 GAAT-
s cb4.chrX              8620928 2 + 21540570 ---TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5658336 4 + 20921866 Gtat-
i caeSp111.Scaffold630  C 0 I 63
e caePb3.Scfld02_0      1901742 23 +  4147112 I
e caeJap4.Scaffold18194  734255 55 -   823664 I
e caeRem4.Crem_Contig0   603867 0 -  4500979 C

a score=419.000000
s ce10.chrX             3489708 23 + 17718866 TTATTTAAATCGACATTGtggag
s cb4.chrX              8620930 23 + 21540570 CTATATACATTATCAGTACAAAG
i cb4.chrX              C 0 I 427
e caePb3.Scfld02_0      1901742 23 +  4147112 I
e caeJap4.Scaffold18194  734255 55 -   823664 I
e caeSp111.Scaffold630  5658340 63 + 20921866 I
e caeRem4.Crem_Contig0   603867  0 -  4500979 C

a score=0.000000
s ce10.chrX             3489731 984 + 17718866  
e caePb3.Scfld02_0      1901742  23 +  4147112 I
e caeJap4.Scaffold18194  734255  55 -   823664 I
e cb4.chrX              8620953 427 + 21540570 I
e caeSp111.Scaffold630  5658340  63 + 20921866 I
e caeRem4.Crem_Contig0   603867   0 -  4500979 C

a score=722.000000
s ce10.chrX             3490715 85 + 17718866 TTTGCTTTCAAAATTGTTTTCCAAAAAAGGGAGCACAACTTATAGATTGCAAAATTATTAGAAGCTGCAATACtttatattattt
s caeRem4.Crem_Contig0   603867 54 -  4500979 ttttccctcaaaattgtttttggaaatAGCAAACTCATATTATAG----------TACTAGACG---------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1901742 23 +  4147112 I
e caeJap4.Scaffold18194  734255 55 -   823664 I
e cb4.chrX              8620953 427 + 21540570 I
e caeSp111.Scaffold630  5658340 63 + 20921866 I

a score=91.000000
s ce10.chrX             3490800 1 + 17718866 a
s cb4.chrX              8621380 1 + 21540570 A
i cb4.chrX              I 427 C 0
e caePb3.Scfld02_0      1901742 23 +  4147112 I
e caeJap4.Scaffold18194  734255 55 -   823664 I
e caeSp111.Scaffold630  5658340 63 + 20921866 I
e caeRem4.Crem_Contig0   603921 0 -  4500979 C

a score=-521.000000
s ce10.chrX             3490801 9 + 17718866 aaatttaat
s cb4.chrX              8621381 7 + 21540570 AAATTGC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   603921 9 -  4500979 AAATCACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1901765 9 +  4147112 AAAATCCAG
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold18194  734255 55 -   823664 I
e caeSp111.Scaffold630  5658340 63 + 20921866 I

a score=291249.000000
s ce10.chrX             3490810 332 + 17718866 ttttCAGATATCTGAGATAATCCTCGGCGTATTCCTAATAGTGATCGCCGCGTTGTTAGCCGTTGTTCGAAGACGCGTACTATTGCGATTAATGCAATGGAGGATAACAACAATAGATCGTAAGAA------CCATGAAACAT---------------------TGTCCCTTAAAAAACCAAC---------CTTCAGATTCCAACCAAGGCATTCACATTATTGGTTTATTGCTTTTTATGTTGCTTCAAATTGTGTACAACACAATAGCAGTACAAACACTGTGGGACGTGTTCGAATATCTTCGGCAGCGGACGATATTTA-TGTACAATCAGGAACGATCGCAAGTGCACCAGTACTTTTTGTGA
s cb4.chrX              8621388 334 + 21540570 TTTACAGGTCTGTGAAATTATCCTTGGCGTATTCCTAATAGTGATCGCTGCACTATTAGCTGTGGTCCGTCGACGTGTTCTTCTTCGGTTGATGCAATGGAGGATAACCACAATTGATCGTAAGTC------ATATATAAAGAA-------------------TTACcccaataaaaaattat---------tttcagactccaACCAAGGCATTCACATCATTGCTTTATTGCTTTTCATGTTCCTTCAAATTGTGTACAACACAATAGCCGTCCAAACACTATGGGACGTGTTTGAGTATCTTCGACAACGAAC-GTATTTCATATACAATCAGGAGCGCACCGCGGTGCACCagtattttttgtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   603930 342 -  4500979 TTTTCAGGTTTGTGAAATAATTCTTGGAGTGTTTCTTATAGTGATCGCAGCACTATTAGCCGTTGTTCGACGACGGGTTCTACTCCGTTTAATGCAATGGAGGATAACCACTATAGATCGTAAGAA------TAATGCCAtgaa--------------------catttctttttcaacctattcgtttttatttcagattccaacCAAGGCATTCACATTATTGGCTTATTGCTTTTCATGTTCCTTCAAATTGTGTACAACACAATAGCTGTCCAAACACTATGGGACGTGTTTGAGTATCTTCGACAACGAACAATATTTC-TATACAATCAGGAACGATCACAAGTACATCAATACTTTTtgtaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5658403 336 + 20921866 TTTTCAGGTTGTTGAAATAATTCTCGGAGTATTTCTCATAGTGATTGCTGCACTATTAGCTGTCGTTCGACGACGTGTTCTACTCCGATTAATGCAATGGAGGATAACGACAATTGATCGTAACAA------CCATTTGTCGG---------------------TCTCTCTTTCCCAACCTATTCGC-----TTTCAGACTCCAATCAAGGGATTCACATTATTGGCTTATTGCTTTTCATGTTCCTTCAAATTGTGTACAACACAATAGCCGTCCAAACGTTGTGGGACGTATTCGAGTATCTACGACAACGAACAATATTTC-TATACAATCAGGAACGATCACAAGTGCATCAGTATTTTTTGTGA
i caeSp111.Scaffold630  I 63 C 0
s caePb3.Scfld02_0      1901774 336 +  4147112 TTTTCAGGTGGTAGAAATAATTCTGGGAGTATTCCTGATAGTGATTGCTGCACTATTAGCCGTTGTACGACGGCGTGTGTTACTCCGTTTGATGCAATGGAGGATAACAACAATAGATCGTACGGC------CTataaattta---------------------tcatttttcatgaaccatcccat-----tttcagattctaatCAAGGTATTCACATTATTGGCTTATTGCTTTTCATGTTCCTTCAAATTGTGTACAACACAATAGCTGTCCAAACACTGTGGGACGTGTTTGAATATCTTCGACAACGAACAATATTCC-TATACAACCAGGAACGATCCCAAGTGCATCAATATTTTCTATAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  734310 349 -   823664 TTTTCAGATTTGTGAAATAATTCTTGGAGTGTTTCTCATAGTGATCGTTGCTTTGTTGGCGGTGGTTCGGAAACGTGTCCTTTTACGATTAATGCAATGGAGGATAACAACAATAGATCGTAAGAAGCGCTGCAGTttaacaaggaaaaaaaaacaaaagtagtcattttttc-------------------tttcagattCCAATCAAGGAATTCATATAATCGGTTTACTGCTTTTCATGATTGTCCAAATTGTGTACAACACAATAGCAGTCCAAACACTGTGGGACGTTTTTGAGTATTTTCGACAACGAACGATATTTC-TCTACAATAAAGAACGATCACAAGTTCACCAGTATTTTTtataa
i caeJap4.Scaffold18194 I 55 I 94

a score=-2187.000000
s ce10.chrX             3491142 5 + 17718866 GA---AAC
s cb4.chrX              8621722 5 + 21540570 aagac---
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold630  5658739 2 + 20921866 GA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902110 2 +  4147112 GA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734659 94 -   823664 I
e caeRem4.Crem_Contig0   604272 0 -  4500979 C

a score=-16840.000000
s ce10.chrX             3491147 225 + 17718866 TGTCTCGCGTATTATCAAGTTATTATTGCTCTTATTATTATTATTCCAATTTTTAATTTTAATTGAACAAGTTTTAGTTCTAGCCTCCAACTTAGTTGGATCATCCAAAGTGattttatttaaaaattttga---aaatttataaaaatCTATCTGAACTACAAGAAAAGATTTATGTAAATTTTCCACTTTTCAAAATCATTGTCACAAAAAGAAACAGTAGATACT
s caeRem4.Crem_Contig0   604272  74 -  4500979 ------------------------------------------------------aattaga----aaaaaatctca----------------------------------atgtTTTTCCTGAGAACTTT-----TATCCTTCTTACCACAATCTGA-------------------------------TTTTTC---------GACGTAGA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5658741  65 + 20921866 ------------------------------------------------------------------------TTTA----------------------------------CGATCCTCGCTAAAAGTTTTCCGATGATTTCTTATAAAATGATCTGG-------------------------------TTTTTC---------ATCGCATA-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902112  60 +  4147112 ------------------------------------------------------------------------ATTG----------------------------------TGATATTCACTGTAG----------AAGTTCTTACATACTGAtctgg--------------------------ttttatttttt---------gtcacaTA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734659  94 -   823664 I
e cb4.chrX              8621727  12 + 21540570 I

a score=-920.000000
s ce10.chrX             3491372 22 + 17718866 CCCCCAAAACAGTATTCAAAAG-
s caeRem4.Crem_Contig0   604346 15 -  4500979 -------TATTATATTTACCAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5658806 12 + 20921866 ----------GATATTCAAAAG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902172 12 +  4147112 ----------GATATTCACAAG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  734753 20 -   823664 ---CCATCAAAATAGTCACCgag
i caeJap4.Scaffold18194 I 94 C 0
e cb4.chrX              8621727 12 + 21540570 I

a score=39286.000000
s ce10.chrX             3491394 108 + 17718866 TTATTTAT--TGTCA-TTCTCTCACTC------------CCACAAAATTTTCTCCCATTTGCTTCGGGCCAA--AAC--GACATTGTGATGTATTTTATGTGATCTTTAGGAAACTAACATTTTGAT--
s cb4.chrX              8621739 104 + 21540570 ttatttat---------tttttacttc----aattttcttctcaaaaattt------acgATTTCGGGCCAACCATTC-AAATTTGTGATGTTTAAAATGTGATCTTTAGGGAACGAAAATTCT-----
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   604361 123 -  4500979 TTATTTATTGTGTCC-ATTCTTATTTCTCATCTCTTccttctcaaaaatgtctccCAATTGTTTCGggccaa--aatc-aaaaatgtgatgTATTCAATGTGATCTATAGGGaacaaaacttctgaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5658818 109 + 20921866 TTATTTAT--TGTCA-TACATTGTCTCTC----------CCCCAAAAATGTCTCCCAATTGTTTCGggccaa--aatcaaaaattgtgatGTATTTAATGTGATCTTTAGGAAACGAAATTTGG-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902184 114 +  4147112 TTATTTAT--TGTCA-TTCATTGTCTccc-----tttctcttcaaaaacttctcccAAACGGTTCGggccaa--aaacgaaaattgtgATGCATTCTATGTGATCTTTAGGaaacaaaattctg-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  734773 110 -   823664 ttatttat--ttacatttcTTCAACTCAATTCTCTTTCTCCT----------TTCCCTTCGCTTCGGGCCAT--TTCC--AAACTGTGATGCTATTAATGTGATTTGTAGAAAACCGAATTCTG---AT
i caeJap4.Scaffold18194 C 0 I 243

a score=96.000000
s ce10.chrX             3491502 22 + 17718866 CCTAGTCTCATAACGCT-------------TTAGT
s cb4.chrX              8621843 19 + 21540570 ---AATCTCCTAGAGCT-------------TTAGT
i cb4.chrX              C 0 I 166
s caeRem4.Crem_Contig0   604484 25 -  4500979 ac-aatcTCATTCAGAT---------ACGATTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5658927 32 + 20921866 ---ATTTCCATCTGAATTTATAACGTTCGATTCGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902298 32 +  4147112 ---attttcatctAATTTTGTCAAATACTATTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734883 243 -   823664 I

a score=11877.000000
s ce10.chrX             3491524 54 + 17718866 AATTTTTTTTTCAATGCCAG---GATTTGAAATAAATTGTTTCAATTGTCTAAAGTT
s caeRem4.Crem_Contig0   604509 54 -  4500979 AGTGTTTCTTCTGATGTTTG--ACTAttcaaataaa-tgtttcaattattttgaatt
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5658959 52 + 20921866 AGTGTTTCATTTGatgtttg----atttcaaataaa-tgtttcaattatttttagtt
i caeSp111.Scaffold630  C 0 I 147
s caePb3.Scfld02_0      1902330 56 +  4147112 AGTGATGCTATTGATGTCTGGAAAAACTCgaataaa-tgtttcaattatttGGAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734883 243 -   823664 I
e cb4.chrX              8621862 166 + 21540570 I

a score=142.000000
s ce10.chrX             3491578 18 + 17718866 ---TTGTTTCTTTTTGTTTTC-------
s caeRem4.Crem_Contig0   604564 18 -  4500979 ---gtGTTCCCTTGCCCTTTC-------
i caeRem4.Crem_Contig0  I 1 I 131
s caePb3.Scfld02_0      1902386 28 +  4147112 ATAGTGTTCCGGTggccttttctttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734883 243 -   823664 I
e cb4.chrX              8621862 166 + 21540570 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I

a score=318.000000
s ce10.chrX             3491596 124 + 17718866 GTTTCTCCGCAGTATTTGGCGCAATGAAAGTTCAATGTTAGGGAAAAT-TTTGATA-AAATTATAAGTTTTCAGTTATAAGAACTGTGTCACGCT-ATTTTTATTCAAATTTATTACAGAATAAAAA
s caePb3.Scfld02_0      1902414 122 +  4147112 gattattaaTGAATTTGATTATAAAAAGAGTACTACGCAATCCAATttgtctgaaacaaaatagaaGGCTTCCCTTTT-----CTGtgtctttctaatttttaacaGAAGTTCctacgaaacaaaaa
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18194  734883 243 -   823664 I
e cb4.chrX              8621862 166 + 21540570 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I
e caeRem4.Crem_Contig0   604582 131 -  4500979 I

a score=0.000000
s ce10.chrX             3491720 775 + 17718866  
e caePb3.Scfld02_0      1902536   5 +  4147112 I
e caeJap4.Scaffold18194  734883 243 -   823664 I
e cb4.chrX              8621862 166 + 21540570 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I
e caeRem4.Crem_Contig0   604582 131 -  4500979 I

a score=220.000000
s ce10.chrX             3492495 5 + 17718866 TTTGG
s cb4.chrX              8622028 5 + 21540570 TTCGA
i cb4.chrX              I 166 C 0
e caePb3.Scfld02_0      1902536 5 +  4147112 I
e caeJap4.Scaffold18194  734883 243 -   823664 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I
e caeRem4.Crem_Contig0   604582 131 -  4500979 I

a score=273.000000
s ce10.chrX             3492500 1 + 17718866 A
s cb4.chrX              8622033 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604713 1 -  4500979 A
i caeRem4.Crem_Contig0  I 131 C 0
e caePb3.Scfld02_0      1902536 5 +  4147112 I
e caeJap4.Scaffold18194  734883 243 -   823664 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I

a score=-3421.000000
s ce10.chrX             3492501 40 + 17718866 TTTTAATTGATTGTGATAAGTTCTCAAACTTTCTTGCAGT----------------
s cb4.chrX              8622034 47 + 21540570 CTTtaattgatt-tgaaaaattctc--------caTCACCAATTAAAATAAGTAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604714 50 -  4500979 TTCTTATCATTTGTGACAAGTTCTCgaacttttcttctcttttcaaaat------t
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1902541 34 +  4147112 ----tatcaaTC----GAACTTGTT--------CTATAGTTCTCAAGAT------T
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18194  734883 243 -   823664 I
e caeSp111.Scaffold630  5659011 147 + 20921866 I

a score=10646.000000
s ce10.chrX             3492541 35 + 17718866 GATTACTCA-TAGGGAGTGGCGT---------------CTCTTCTTTACCA
s cb4.chrX              8622081 51 + 21540570 GATTACTCATTTGGGAGTGGCGCTTCGTATCtcttcctaattttttttcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604764 22 -  4500979 gattacTCA-TTGGGAGTGGCac----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659158 22 + 20921866 GATTACTCA-TTGGGAGTGGCGC----------------------------
i caeSp111.Scaffold630  I 147 C 0
s caePb3.Scfld02_0      1902575 22 +  4147112 GATTACTCA-TTGGGAGTGGCGC----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  734883 243 -   823664 I

a score=41501.000000
s ce10.chrX             3492576 145 + 17718866 ATTATTT--TTTTTGTTTCCAAACTGAACTATACTCTTT--------CGGCAGCCCCTTCA------ACTTATCTCATTTTTATTGTTCCTGTTGTGATCAGCTC-----TCACACGTCACTTCAAATTATCTCTTTTTG----------------AGTAAAGTTTCAATGAC----ACATTT--------TTT
s cb4.chrX              8622132 154 + 21540570 tttattt--tttatcgtTAAAAAACGAACTTTGCTGTCT------CCCGTAAAACCCTTCC------TTGTTCTTGGTATC-----TGTCTGTTTAGATCAGCTCCTGTTCCGCAAGTCACTTTGAATcatcttc---------------------aaaaaagtttcaatgaGATTGacatccatttctttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604786 156 -  4500979 ----ttt--tctcttgtttcaaaatgaactaTGCtgctt------ctaaaaaaaaac--ca------ttctctttattctt-----tttctgttttgatcaGCTC-----CCGCATGTCACTTCCAATTAtctcctcttccttttttggcGGTTTTCACAGAGTTTCAATGACATTGACATCC--------TTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659180 166 + 20921866 ----TCT--TCTTCCATCCCTAATTGAACTATGCTGttttaaatttccaaaaaacccctTCCAAA--TATTCTTTCCTCTT-----TCCCTGTTTTGATCAGCTC-----TCGCACGTCACTTCAAATTATCTC--TTCTCTGTTTTGGCGTGTTTCATAGAGTTTCAATGACATTGACATCC--------TTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902597 169 +  4147112 ----TCTTCTCTTTCGTTCCAATTTGAACtatgctgttt--------caaaaaacccttcTAAAATCTATTCTTTTGCCTTTTTTGTCTCTGTTTTGATCGGCTC-----CCACACGTCACTTCAAAttatctcttttctctgttttggCGTGTTTCATAGAGTTTCAATGACATTGACatct--------ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  735126 132 -   823664 attattt--tatttccttt----------tattctactt-------tagggagtgcccaca------gctttttccattttccatttccttttCTCTAACCGAAC----------TGTCATTTTGAATTACCTATTTTTAC---------------ATGACTGTTTCAATGAC----ACGCGC--------TTT
i caeJap4.Scaffold18194 I 243 I 42

a score=-194.000000
s ce10.chrX             3492721 11 + 17718866 TCGG--ACTTT-TT---------
s cb4.chrX              8622286 23 + 21540570 tcggtaaaattggggtggttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604942 20 -  4500979 TCGG--AAATT-GGGTGGCTTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659346 11 + 20921866 TCGG--AAATT-GG---------
i caeSp111.Scaffold630  C 0 I 25
s caePb3.Scfld02_0      1902766 11 +  4147112 tcgg--aaatt-gg---------
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18194  735258 42 -   823664 I

a score=-2140.000000
s ce10.chrX             3492732 19 + 17718866 CCCT---------------------GTTTCCC-------TATCGTAG
s cb4.chrX              8622309 19 + 21540570 tccc---------------------atttatt-------ttttgttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   604962 47 -  4500979 CCACCGCCAACACATGAGTATGAAAATTTGCTGTGGTGGTttccttc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1902777 38 +  4147112 I
e caeJap4.Scaffold18194  735258 42 -   823664 I
e caeSp111.Scaffold630  5659357 25 + 20921866 I

a score=-1528.000000
s ce10.chrX             3492751 7 + 17718866 ---ATTGTTT
s cb4.chrX              8622328 7 + 21540570 --tctcttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605009 7 -  4500979 --ttttatt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659382 9 + 20921866 atttttggt-
i caeSp111.Scaffold630  I 25 C 0
e caePb3.Scfld02_0      1902777 38 +  4147112 I
e caeJap4.Scaffold18194  735258 42 -   823664 I

a score=4693.000000
s ce10.chrX             3492758 16 + 17718866 TCTCCCTCTCATGATG
s cb4.chrX              8622335 11 + 21540570 -----ttttctatata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605016 11 -  4500979 -----ttttcgtcaTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659391 16 + 20921866 ttttattcTCGTCATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902815 16 +  4147112 tttttttctcgtcatG
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18194  735258 42 -   823664 I

a score=50993.000000
s ce10.chrX             3492774 109 + 17718866 GG--------TATCCGA-----ATGAAAATAA----------------------ATAAAAATAGAATACTACTCCTCCTA---C--TCTGT---CACTTTTCCTTGAATAA---CAGCCGTTGCTAGTGTCAAGTTTCGTGTAGAAAC-ACTTTCG
s cb4.chrX              8622346 114 + 21540570 gGATAAACTACATTTAAATAGCATGAAAATAGCAA-----------------GTAT--------------CTTCTCACTG---CGGGTCGT---CACTTTTCTCTGAATAACATCAGCCGTTGCTAGTGTCGAATTACGTGT----AC-ACTTTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605027 116 -  4500979 GG--------TATCCGA-----atgaaaatagcat-----------------ttttccTATCCAACTACCCTTCTCCCTT---CGGGTCGT---CACTTTTCTTTGAATAA---CAGCCGTTGCTAGTGTCAAATTACGTGTAGAAAC-Actttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659407 112 + 20921866 GG--------TATCCAC-----ATGAAAATAGCTT-----------------TT-------CTATCCACACCCCACCCTACTCCGGGTCgt---cacttttctctgaataa---CAGCCGTTGCTAGTGTCAAATTACGTGTAGAAAC-ACTTTGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902831 116 +  4147112 GG--------CATCCGT-----ATGAAAATAGCTT-----------------TTCTCCACCCTATCCACATCCTCCCCTG---CGAGTCGT---CACTTTTCTCTGAATAA---CAGCCGTTGCTAGTGTCATATTACGTGTAGAAAC-ACtttga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  735300 136 -   823664 AG--------TAATTAA-----AtggaaacaacaaaaaaacagaaatcgaAGCTTTAAAAATAGGATGAGTTAAGTTGCA---TGAAACTTGCCCAATTTTCCTCGAATAA---CAACCGTTGCTAGTGTCGAATTACATGTAGAAACAACTTTG-
i caeJap4.Scaffold18194 I 42 I 89

a score=-3365.000000
s ce10.chrX             3492883 65 + 17718866 ATA-----------------------AGAGAGAACTGAAACA---AAAAAAAGTTTCAAAGATGATTACGATTTTTATATTTTTACATTTT
s cb4.chrX              8622460 53 + 21540570 GGAAACAGAGAGAATGAAGTAGAAGTTga-------gaaagagagggaaaacctt-------------------------------gtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605143 26 -  4500979 aga------------------------ga-------aaaacagagagaaaact----------------------------------tttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659519 56 + 20921866 GAG-----------------------TGG-------AAAACagcgaaaaaaacttttgaagatGAT-----TTGTTATGCTTTTGCGTTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1902947 53 +  4147112 aag-----------------------agg-------aaaaca---aaaaaaacttttgaagatgAT-----TCGTTATGCTTTCGCGTTTT
i caePb3.Scfld02_0      C 0 I 24
e caeJap4.Scaffold18194  735436 89 -   823664 I

a score=-13496.000000
s ce10.chrX             3492948 111 + 17718866 CAAAATTGTGTTTATTTTTTGACGCGAAAACTCCAAAAACATAATTTTTCCTGCTTTTCTGCCATCTTTTCATTTCAATTTGTTTCATTTTTTTGAGACGCAGAATTGAGG
s cb4.chrX              8622513  46 + 21540570 ------------------------tgaagatg--aagattata-----------cttttttctagattttgttCTCTGCTACc----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605169  23 -  4500979 ------------------------cg-----------------------------tttttgctaA-------CATCGACTGGC----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659575  23 + 20921866 -----------------------------------------------------------TGTTAA-------CATCAACTAGT-----------GAGACA-----------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1903000  24 +  4147112 I
e caeJap4.Scaffold18194  735436  89 -   823664 I

a score=-1686.000000
s ce10.chrX             3493059 59 + 17718866 AGCTGGAAGAAAAAG-------TATTGCAATAATTTATTTTTGCTT--TGATAATACCAAAACTTTTT
s cb4.chrX              8622559 36 + 21540570 aacaaagagaaaaaa---------------------------gtttaacgA-----GCAAAATTGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605192 53 -  4500979 AgtagtgagaaaaaaagaacaacgtTA----------TTTAGGTTTCTCAA-----ACGAAACTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659598 39 + 20921866 -----AGACGAAGAA-------GGTTG----------TTTTAGTCT--CCa-----ccgaaaacattt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903024 44 +  4147112 AGATGAGGCAAAGAA-------GGTTG-----------TTCAGTCT--CGAc----ccgaaaacattt
i caePb3.Scfld02_0      I 24 C 0
e caeJap4.Scaffold18194  735436 89 -   823664 I

a score=38599.000000
s ce10.chrX             3493118 128 + 17718866 T----TCaaaaaataagaaaaaaaaaccaaaaaaa-------aaaagtaaaGCCA-AATCCAATTTG--------------------AAGAAAACCTCAAAG---CTTC-------ACAACGATATAC--------A----TATGCAGACAAAGTTATCTTTGTCGCCATCCTGTTCCAAAA
s cb4.chrX              8622595 134 + 21540570 CCCAGCCAAAACATgaggagaaaaatgggagagAGCATCCCAAAAACCGAAACGacaattgaattt-----------------------gaaaacctcAAAG---TTTT--------TACTGCTGAA-----CAGAA----TATGCAGACAAAGTTATCTTTGTCACATTCCC---CCAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605245 129 -  4500979 -----TCAGAGGataag----aaaatgcaaaaaag-------aaaaagaaaacgacaattgaattt-----------------------gaaaacctCAAAG---TTTTG----GAGTAAAGCTAAAA---GAAAGA----TATGCAGACAACGTTATCTTTGTCGCCTTCCTATGCcagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5659637 131 + 20921866 -----tcagaaaaagag----caaatgcggaaaaaagt----aaaa--aaaacgacaattgaattc----------------------aaaaagcctcaaagttttttt--------tgtcgaCAAGC--TGAAGAA----TATGCAGACAAAGTTATCTTTGTTGTCTTCCTATTCcctaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903068 130 +  4147112 -----tcagaagaggAG----Caaaagcagaaaataga----aaaaggaaaacgacaattgaattct---------------------aaaaaacctcaaaa---tttt--------taacgACGAGC---GAAGAA----TATGCAGACAAAGTTATCTTTGTCGCCTTCCCATTccctaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  735525 171 -   823664 ----TCCAAAGAATACAGCAAAAAATAcgcgacaaaaa----aaagtaaatttgaCAATTGAGTTTTaccatagaaaaaaaaaaaaaaagaaaaccttCAAC---TTTTGCGTTGCCTACCGACTAAACATGAGGAATATGTATGCAGACGAAGTTATCTTTGCCGACCatgttttctaaaa
i caeJap4.Scaffold18194 I 89 I 897

a score=2086.000000
s ce10.chrX             3493246 38 + 17718866 TTGTTTGGAATTTATTCA---CATCACCAAACAAC---------ACACTT--
s cb4.chrX              8622729 19 + 21540570 ---------------------AACCACCAAACAAC-----------ACATC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   605374 34 -  4500979 -------atatttattcaaaaaaccatcgAACAac-----------aatttt
i caeRem4.Crem_Contig0  C 0 I 83
s caeSp111.Scaffold630  5659768 45 + 20921866 -aattccaaatttattca---aatcaccAAACAAC-AACCGCAGTCACTT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903198 46 +  4147112 -aattccaaatttattcA---CATCATCAAACAACAAAACCCAGCCGttt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I

a score=-1596.000000
s ce10.chrX             3493284 13 + 17718866 CCCCACAAGTCGT----
s cb4.chrX              8622748 13 + 21540570 ----CCATATACTTTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5659813 13 + 20921866 CTCTCCCCGTCAT----
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      1903244 13 +  4147112 ttttCCATCCCGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I
e caeRem4.Crem_Contig0   605408 83 -  4500979 I

a score=-1895.000000
s ce10.chrX             3493297 20 + 17718866 --------CATCTAAAGAGTAGCACACA
s cb4.chrX              8622761 18 + 21540570 ------CTTACTTAATAAATCGCG----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1903257 24 +  4147112 CATTCTCTTCCTCATAAGGTTTAG----
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194  735696 897 -   823664 I
e caeSp111.Scaffold630  5659826 23 + 20921866 I
e caeRem4.Crem_Contig0   605408 83 -  4500979 I

a score=188.000000
s ce10.chrX             3493317 48 + 17718866 TATTTTTTGTTTGAAATGAGAATCCAGAACCGCGTCCCAGAAAATATT
s cb4.chrX              8622779 28 + 21540570 --TCATTCCCttgaaa-----acccct-------------aaaaaaTT
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold630  5659849 36 + 20921866 TGTCTGTTTCTCGAAACGgatatcttt------------gaaaaaatt
i caeSp111.Scaffold630  I 23 C 0
s caePb3.Scfld02_0      1903283 42 +  4147112 TGTCTGTTTCACACAGTGGATATCGTTTAGAG------agaagaaatt
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I
e caeRem4.Crem_Contig0   605408 83 -  4500979 I

a score=-10251.000000
s ce10.chrX             3493365 208 + 17718866 GAAAATAATACTGAAAGAGAAGATAATACGATTATGTTTTTTTTATTACGAAAGCAATTTTTTTCCGTCTTGCTAAGATGACCTTCAGCTATGGGATT---TTTTTTCACTTTTAGAGATATAACAAAGGTCGGTGTCAAAAAATGATCCTTTTTAATCTTTTCAGTTTTCATGAAAAAAGGTTTAGAAAACCCACGGTTTT-------CTAATTCAA--------------------------------------------------
s cb4.chrX              8622818 113 + 21540570 GGAAAA---AGAAGGATAGAAGATAATACGATTA---TCTTACtcgcagaaaaaaaat--------------tgaaaatggttctaattc----tttt---tttttt---------------------gttccttg------tATGGCCTTCC--------------------------------------------------------CTAAGCTAGA-----------CCAA----------------------------------
i cb4.chrX              I 11 I 4
s caeRem4.Crem_Contig0   605491 127 -  4500979 gaaaaatgtaaaagaaGAGACAATAATGCGATTA---TTTTACTAATATGAATGcga-----------------gaaatgtttttttgtt----gcttccATTCTTT---------------------GTTCCGTG------TCTGACCTTCCCAAGT---------------------------------------------AAAATGCTAATCTAAA-----------TCAA----------------------------------
i caeRem4.Crem_Contig0  I 83 I 46
s caeSp111.Scaffold630  5659885 185 + 20921866 -------gtgaaaagagagaagaaaatgcgATTA---TTTTGCTAATacgaattgaa---------------agaaaatgttttggtgcc----catt---ttttcttgct---------------aaGA----TG-----AGATGACCTTCCGTGGT---------------GAAAGGCGGAACCAAGGCCAAACCGGactaaaaaattctattcaGATGTTTTCGGTTTCATATATAAATGT-----------TTTCATACCGTA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903325 200 +  4147112 -------gtgaaaagagagaagataaTGCGATTA---TTTTGCTAATacgaattgaa---------------agaaaatgtttttgtgcc----catt---ttttcttgct---------------aaGATGAGTG-----AGATGACCTTCCCAAGT---------------GAAAGGCGGAACCAAGGCCATACCGAACT-ATAAATCCAATTCtgaattctagattttcaaagaTGTGTTTTAGAACCAAAATTTCATACGGTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I

a score=-11320.000000
s ce10.chrX             3493573 77 + 17718866 TTTTTTGGTTATATGAAAAAAATTTGGTATTGGAAAAATAAAAATTTTTAATGATGAAAAATGAAAAAAGTTTTTAG
s cb4.chrX              8622935 34 + 21540570 -------------------GAATTTTATAT------AATAGAACTATAAAAGTTTATAG------------------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold630  5660070 45 + 20921866 ------------------------GTCCACC-----AAGAAAACCGTCTGGCATTGCTTTTC-AAAATCGTTTCA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903525 50 +  4147112 ---------------------ATCTTtcgcccaaaaaaaaaaaacggaatacaATGCATTTT----ACTGTTCAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I
e caeRem4.Crem_Contig0   605618 46 -  4500979 I

a score=-22801.000000
s ce10.chrX             3493650 140 + 17718866 TTTTTAGTATTCTCATACTTAAATATTAGTCGTTTCTATGCCAAAAATAATAATCAAAAATGATAAATCAACCAACAATTTGAAAAAAATGCGGCAATAGTTTTTTTT----TTTGGCAACTGCTCAAAATTGTTTAT---TAATTT---------
s cb4.chrX              8622969  74 + 21540570 --TACAAT------AGATCACGAATACAATC----------TAACAGTAGCTGTACGAGA----------------------------------------ACtttttt----gttggtaa-----------gatttttatttgattt---------
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   605664 109 -  4500979 TTTTCAGT------AGTGCAAGAAATTAACTA-----ATCGAAAAAATACGTGTACAAGGGTTT-----------CAGGTTACAAGAGATACT---ATACACTTTTTTCGTAGTTGTACA-----------GACCGGAA--TAATTT---------
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold630  5660115  66 + 20921866 ------------------TTCGGCACTagtc----------agaaaacaaatacaaaaaa--------------------------------------------cttt----gGAGAGAA-----------AGTTTGA---TGATTTTATTACTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903575  66 +  4147112 ------------------CCTGATACCAGCC----------AGACAACAAACATGGAAGA--------------------------------------------ATTT----ATTGGGAa-----------agtttga---tgattttattaCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I

a score=-5724.000000
s ce10.chrX             3493790 84 + 17718866 TCAATAAACAAAATAGGGTGTCAAACTGAATTAAGCAGTTTAGAAATTCTAAATTTTAAAAGTAACATTAAAAGTTATCATAAA----------
s caeRem4.Crem_Contig0   605773 49 -  4500979 ------------------------------TGGGAAAGTTTGATGATTTTA-----------TTACTTT----GTTATCATAACCTATGAGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5660181 11 + 20921866 -------------------------------------------------------------------------GTTATCATAAC----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903641 11 +  4147112 -------------------------------------------------------------------------GTTATCATAAC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I
e cb4.chrX              8623043 46 + 21540570 I

a score=8417.000000
s ce10.chrX             3493874 176 + 17718866 ----------TTTCAAAAACTAGTTTTGTTTTGATTTCTATTCTATTTTGCG--TTAGAAAAA-ATATAATACTACACCCATTTGAGATGTCATTAT-TCACTTCTATTCCGC-TCTCTCACTTGTCTCCCTAG--------AAGAACAACTATTCCTTCATATTTTATCATTCAACTTCCGAGATTGATCCAACATAC
s cb4.chrX              8623089 148 + 21540570 ----------CCCcgaaaacttgtttttttc---tttcttctcattcCTGTGACACCGGAAAA---GTGATACTACAGCCATTTGAGACG-----GTCGTATTTCT-TCCTACTCGTCCTACCCACAATTTTGCCAACCCAAAGGAACGA-------TCCCAA---CAC-------------AGATCCTT--GTC----
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   605822 147 -  4500979 ----------GCACAagaacttgtttttctt---tt--------ttcgtatG--ACCGGAAAAAAGATGATACTACAGCCATTTGAGACG-----AT-GTattctc-tttcatttctttcattccTCATTCTTT--------GGGAACGCTGATTCTTTCCGA---TCCA---------TTGAGATCGtt--gtctttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5660192 148 + 20921866 CTATGAGAACGAACAAGAACTTGTT-------------------TTCTTGCG--ACAGGAAGA----TGATACTATAGCCATTTGAGAC---------acatttctatttctcttcttc--tccttttttcta---------agGAACGACTATTC-ATCCAA---TCCCATTCAACTTTTGAGATCCTt--gtctttg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903652 148 +  4147112 CTATGTGAACAAACGA------GTT-------------------TTCTTGTG--ACAGGAAGA----TGATACTACAGCCATTTGAGAC---------ACATCGTAATTCttcctctttcatttttctctctc---------aggAACGATGATTCAATCCAATCCTCCCATTCAACTTTTGAGATCCTt--gtctttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  735696 897 -   823664 I

a score=77416.000000
s ce10.chrX             3494050 73 + 17718866 ATTTTTCCATATTTATTTGCTTAACAGC-TTACCTTGTCGCACACTTGACGGTATCCATATCTCAAACAGTAAA-----
s cb4.chrX              8623237 71 + 21540570 --TTTTT-GTGTTTATTTGCTTAACAGCTTTACCTTGTCGCGCACTTGACGGTATCCATATCACAAACAGTAAA-----
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0   605969 72 -  4500979 atttttt-gtgtttatttGCTTATCAAC-TTACCTTGTCGCGCACTTGACGGTATCCATATCACAAACAGTACA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5660340 72 + 20921866 atttttt-gtatttatttGTTTAACAGC-TTACCTTGTCGCGCACTTGACGGTATCCATATCACAAACAGTATA-----
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1903800 73 +  4147112 attttttcatatttatttgCTTAACAGC-TTACCTTGTCGCGCACTTGACGGTATCCATATCACAAACAGTATA-----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  736593 78 -   823664 atttttgtgtatttattTGCAAAGCAGC-TTACCTTGTCACGTACTTGACAGTATCCATATCACAAACAGTATATCAAC
i caeJap4.Scaffold18194 I 897 C 0

a score=-1871.000000
s ce10.chrX             3494123 28 + 17718866 TGACACCCCCTCTCTCGTGGC-AATGTCT--
s caeRem4.Crem_Contig0   606041 26 -  4500979 --TCAGTCTTCCCCTCATTAC-AATGTCT--
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  5660413 29 + 20921866 CACTGCCTCCTCCTTTATTTCGAATGTCT--
i caeSp111.Scaffold630  I 1 I 21
s caePb3.Scfld02_0      1903874 26 +  4147112 CACCAGTGTCCC---TACTTCTAATGTCT--
i caePb3.Scfld02_0      I 1 I 21
s caeJap4.Scaffold18194  736671 30 -   823664 TGGCATCCACCTCTCTGTCTg-gctttttcg
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8623308 55 + 21540570 I

a score=43974.000000
s ce10.chrX             3494151 64 + 17718866 AGAACAAAAGTGTTGACTTC---ATTTTCA---ATTTCCT----------ATCCAAACAATGTTCATTTTGTTTATATTT
s cb4.chrX              8623363 67 + 21540570 agaacaaaAGTCTTGactcc-------------tccttttttttctttcaatccAAACAATGTTCATTTTGTTTATATTT
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   606088 56 -  4500979 AGAAC-ACAGTGTTGACTTC-------------TTCTCCT----------ATCTAAACATTGTTCATTTTGTTTATACTT
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  5660463 57 + 20921866 AGAACAACTGTGTTGACTTC-------------TTCTACT----------ATCCAAACaatgttcattttgtttatattt
i caeSp111.Scaffold630  I 21 C 0
s caePb3.Scfld02_0      1903921 70 +  4147112 AGAACAAAAGTGTTGACTTCTACATTTTACTTTTCCTCTT----------ATTCAAACATTGTTCATTTTGCTTATATTT
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold18194  736701 63 -   823664 aaaaaaaaattgtcaggTTT---ATTTAC----TTTTCTT----------ATCTAAACACTGTTCATTTTGTTTatactt
i caeJap4.Scaffold18194 C 0 I 1464

a score=-6806.000000
s ce10.chrX             3494215 421 + 17718866  
s cb4.chrX              8623430 334 + 21540570  
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig0   606144 383 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5660520 365 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1903991 344 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=3945.000000
s ce10.chrX             3494636 43 + 17718866 GTTCCTCG----GTGAACCGCCTTGAGTTTAA---------TTTCGCCTCAAGGGG----
s caeRem4.Crem_Contig0   606531 40 -  4500979 ---------------GCTCCTCTTGAGAGAAA-----TGtattgaaattcaagaaagatG
i caeRem4.Crem_Contig0  I 4 I 10
s caeSp111.Scaffold630  5660885 60 + 20921866 AATCCTCACATCGAGGCGCTtcttgagagaaaaaaagcgtATTTCAATACAAGAAAGATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1904335 55 +  4147112 ACCCTTCAAAAAGCGACGCTTCTTGAGAGAAA-----TGTATTTCAATACAAGAAAGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I
e cb4.chrX              8623764 79 + 21540570 I

a score=45393.000000
s ce10.chrX             3494679 294 + 17718866 ----------AGTAGCAG---G----------AAGATTCCGAATTTTTTTGCAA----TTTATCC------GTT------------------------------------------------------------------CAATGACAGCTGCTTGTCATAGTTCT-TCAAATTATGAGATATTGTCGTTCGGTAGGGGGGGGGGGGGCGCC--------AACT-CACTTCATC--ACTTGTC-AC--CG-------AGCTGTGTGTTTGACAACAGGA--AC--CCATTCCC---------CCTAGCAATTGG----TCTCACCT----TAGCTTCTATCTCTT-----TTCCAATTGCCGAAC--ATCACATAGTTTGATAAATCGT-GTTTGTTCGAATCTTCGACTTTTGTTTTATGA---------------------------------------------------TTTATAGCATTTTTCTCAGGTG-------
s cb4.chrX              8623843 457 + 21540570 ----------AGTGTGAGGGCGTTTAGGAATTATTTTTACAAATGTTTCTTTTGCCCTTTTCTCCTAGAGCCTCTCCTTCTAGTGCTCCAGAGGC--------------TGCTCTTCCGTTTCAAATAGATCACTTTTCGTGTCGACAGCTGTTCGtcatactttcaaaaaattatgaggtA---TCGTTTGGTAGGAAAGATCAGGGTGCCAACCGAAAGGCTCTTTCTCATC--ACTCGTC-ACCTTGGACGACAAGCGGCGTGTTTGACAACAGCA--CC--CCATTTTTCTTATATTCTCGATCAATTGGTTTTTCTCACTTTGGGTGACtcctatctctt----------ttttctgatcttaacacattttttgacgaATCGCAGTTTGTTCAACA-CTTGTTTCGTGTTTTGTTGGACTTCAAAAGCAGGtggaatttattttgaaagcGGAAATTGAACAAGAGACTTTTgccctattttttcaatctccGGTT
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig0   606581 368 -  4500979 ----------AGTGTGAGTCCG---AGGCGTGGGCTTTGCAAATTATTTCTTAA--CGTTGCTGCTG----TTCTGCTCCTAGAGAT-----ggccttttttcttttttttttcttccgctCTCAATTTA-----TTTCATATCGACAGCTGTTAGTCATacttccaaaaaattatgaagtaTCGTCGTTTGGT----------AGGGCGCC--------GACGCCTACTCATC--ACTTGTC-AC--TGAGGGGACAGAGGTGTGTTTGACAACAGGAGGCC--CCATTTCT----TATCCCTAGTCAATCGG----TCGCACCT----TAACTTCTAtctcttcagtttttcattttctgaac--aacacattttttgatgaatcgt-GTTTGTTC-----------CTGAGCTCTGTTT---------------------------------------------------CTTGTGCTTTGTTGTTTCTGT---CGGTA
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5660945 341 + 20921866 AGCAATATGAAGTGTGAG-CCG----------AGCTTTGCAAATTATTTCTAAA--CGCTGCCGC------CTTTCTTCCTATGAAG----------------------TAGTTTTCTGCTTTCAATTCA--------TATATCGACAGCTGTTTGTCatacttccaaaaaattatgaggTA---TCGTTTGGTAGGGA-----AGCGCTCC--------G----CGACTCATCAAACTTGTC-TC--TGAGAAGACGGAAATGTGTTTGACAACAGGGCGCCGGCTATTTCT----TATCC-CTATCAATTGG----TCTCACCT----ATGCTCCTATCtctt----tcttcagtttttgaacacaacacattttttgatgaattgt-GTTTGTTCTA---TTCTTTGTGTCTCTAATTG---------------------------------------------------C----------TTGTTTCAGTG-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1904390 335 +  4147112 AGCATTATGAAGTGTGAG-ACg----------agctttgaaaattatttctaaA----CTGCTCC------CTT--ATGCTATAGCG----------------------TTGTTAT---------ACTC-----------CATTGACAGCTGTTTGTCatacttccaaaaaattatgaggTA---TCGTTTGGTAGGGA-----A--GCTCC--------GACGCCAACTCATCACACTTGTCATT--CGAGGAGACAGGAAAGTGTTTGACAACAGGCCGCCGGCCATTTCT----TATCCGATATCAATTGG----TCTCACCT----CTGCtcctatctctt----ttttcaa-tctcgaacacaacacattttttgatgaattgt-gTTTGTTCTAAACTCCACTTTGTCTTCAATCT---------------------------------------------------CTT------TGTTGTTTCGGTG-------
i caePb3.Scfld02_0      C 0 I 163
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=-47000.000000
s ce10.chrX             3494973 106 + 17718866 -----------------------------CTATCAA-------------------------------------------GTGTGGTATTTCAG---TTGTTCCAGGTGTTAA---------GGTG------TTAGGCGGTTAAATGGCAAGAGGAAGTGAGAAGCA-------------------------------AAATGGTGAAAAGTAACTTC---------------------------------------------CAGATAATCA------------------------------------------------------------------------------------------------
s cb4.chrX              8624300 349 + 21540570 TTTGACAAGTTGAGAGCTAAAAATATATGTATTCAACTTACAAATAAGTTAtataaaaatgcatttttcatttgattttttttcgatttttaaaatgttttgaaaattttcagagaccCGGAGCTCCGCTGTCGAGTTTCCGAGCACTgggaaaaatttggaagtaGTG--------------AAACAAACATACATAGGtgga-aaaatttgcattcgcaaaattttttttaaatcaccTTGCTTTTCTTTTTGCCGATATTTGAATATCATCTcttttggcccgtttttgtattgaaaatgttgtgt-ctttcagaaatcggcagatagctgaaaaactaaaaattttagaaata---ttttgtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   606949 237 -  4500979 TTTA------TTGCAGGTGAGAATatttataatcga---------aaatt-------------------------ttttgtgacgATTTCCAG---GTGTTACAAATATT-----------GGCT------TCTAGTCTTGAAATAA-GGAAGTAACATGGGAACATTGCTATTTCTATCTGACAATTAACTCAAA-AAGTAGC-AAGTGTAGCTATTGTGA----------------------------------------CCAAAAATCA--------GAGTCGTTTT-------ACAAAGCAATGTACTTTCATAATCCTCACCATTG-------------AATATGAGAGATAGGGTTGTGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5661286  61 + 20921866 --------GTTTCCAggtgaaaaatcatttgatcaA-------------------------------------------------AGTTTCAG---TTCGTATGAA---------------AACC----------GATTTCaaaca------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1904725 163 +  4147112 I
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=-69915.000000
s ce10.chrX             3495079 159 + 17718866 ACACAA----GTTTTGAAATT------TTTTGTTT-------TCAATCAAGT-------------------------TTCGAAAAG---------------TACAGAA----------------------------AAATATT----TTTG---TCAAA------------------------------------------------------------GTTAACAAAA----GTTTTTTCTAGA---CTAGAAAAGCTTCACTACATTGATATAAAAATTAAGTTAGTAGTGCCTAGTCATAATATTTCCA----AACTAT----------------------------
s cb4.chrX              8624649 212 + 21540570 atgcaa----attttccaatctaggtctgttttccACCC---TCCATAAAGC-----------------CCTGAGTTATAGAAAAC--------TTGACAgttgagct-------------------------ccagactcttgaaaatgg---tcgaaatg--------------------------gccgaaa------------------------accaactgaaaaatactttttttggaGATCTAATAGACTAGCACTGTATCAATATACGCTTT------------CTTTG-C-------TATCA----AATTTTGGCTAGAATGTATTTTGTGCCAAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   607186 184 -  4500979 ATACAATATTAGTTAGCTATTCAACTATTTATTTTAGCTACATACATCAAAC-----------------CACgcacaataaaaaaa--------tt-ctggtTCAGAA-------------------------TCAAACAGTT----ATTA---TCTAA-------------------------------CGTAA------------------------AGAAATTAAAAGTTCATCTTCTTATA----------------ATTGCAAAAAACGAAACGTT------------CGTTGCC-------TTTCT----AATTGC----------CATTTCCTGATAGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5661347 101 + 20921866 ------------atggaaatt------tttgattctt------ttataatac---------------------tattttgaaatag---------------cACAGAA----------------------------------------------TTTAA-----------------------------CCTGTGA---------------------------------------------------------------------------------------------------CTAACC-------TACAA----AAACTTTGATGGA---TGTGTTCCTCTAAATTT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1904888 308 +  4147112 ACACAA----ACTCTGAAATTCTaacgtttttctcttctaaGCTTAAAATATTTGTTCATGGGGTTTCTAACGTATTTCTAAAGAGAATAATAACTAAAGACACAGAAAATGAACACGAGAACGATGAATCCATCAGACTCAG----ATGAGCTTTTAAGCATCCCTAATTATATCCAAATTCATGGTTCTGTTAGGACAAATCCCTTTCAATTAATATGCTAACTGAA-------TGTTTTAGATACACATAAAGATA----TACCAAGAGCAAAATATT------------CCTATTC-------TGTAATAATAAGCTTGGTAGGA---TG-ACACTTCTAGACTAT
i caePb3.Scfld02_0      I 163 I 32
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=-1059.000000
s ce10.chrX             3495238 23 + 17718866 -------GCATAAAATTGAGTCAAGCTATC
s cb4.chrX              8624861 22 + 21540570 AAAGTTCCCTAATTATCGAGTC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   607370 22 -  4500979 G-----CACTAATTATTGAGTCAGAAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5661448 20 + 20921866 -----GCACTAATTGTTGAGTCAGT-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1905196 32 +  4147112 I
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=72.000000
s ce10.chrX             3495261 251 + 17718866 AAAAACCTA---------------------------------------AGAAAATTGAAGTCCATGACCGAATATAT--------AGAAAC--AGCAATTATCTTTTCATTGTTTCC---TCCCGTTTT-----C------TCAGTTTCTCT-------CAAATATTTT------TCTCAGCC--AT----------ATTTTCCAATCAAG----TACACCAAAGTTACAAAAAGCAATGACTTTTCTGAAA-----TCACATA-AAAAGTAAGTAGTGTTTCA-----------------AAATTGATATTA-----------------AATTCAGTT-------TCCGCGTCTGCCAAGTATTTTTCAGAT-----TCTAGTCTAGCGTTACC-----------
s cb4.chrX              8624883 273 + 21540570 --------------------------------------------------AGAATTGAAATGCATGACCCAATATAGGGGACAAAAGAAAG--AACAATTAtctcttcttcatttcc---tttcttttt-----ccttttatgtctttctccatcttctACAACATTCC----Aatattctca--gt------------ttttcaatcAGATGGTCAGCGCCA-------------CTGGATTACGTCAAAAGCAAATCAAATTGAAAG--------tgtattaa--aatt-------ttcaattttatagtAAAC--------C-----AATTTTAGT-------CTAGTTTTTGTGACCAACTTCTCGTAT-----ATTTTTATAAGCaaattctaccgtaatc
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   607392 252 -  4500979 ------------------------------------------------AGAGAATTGAAATGCATGACCCAATATAG--------ACATAC--AACAATTAtcgtttcttcatttcc---tttctctttttctccgtttaacctttttcttagttttGTGATACATTCCTTCAGGTTACCGCA--ATTTC--------GTTTCCAATCATAGGtacacaacaa--------aaaacaaagattacGTCGAAA-TAAATCACATT-AAAG--------TGTCACA-----------------AACTTTATATta-----------------aatttttct-------cttatt-----------cCCACCGTAC-----TTCTTTCTAGACTGACTCCC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5661468 279 + 20921866 -----------------------------------------------------ATTAAAATGCATGACCCAATATAG--------ACAAACGGGGCAattatcttttcttcatttcc---tgtCTCCGT-----TTCTTTGTCATTTCTTTA-------GATACACTCT----TGTTTCCGCg-cgt-----------tttttcaatcaaaggTACACGCtcagc---aaaaaaacaaagattacGTAGAAA-CAAATCACATA-AAAG--------AGTGGAAacgaatattaaaaattcaacacTACCGTATTCCAGTGTCTCGTAGAAATTGTGGTG------TTTGTTACCGCTACCacttattttctt-----ccttGTCTGACCTAACT-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905228 356 +  4147112 aaaaacttGAATGTTGTTTATGTTTCCGAACATGCACTAATTATTCGGTCAGAATTGAAATGCATGACCCAATATAG--------ACATAC--AACAAttatcttttcttcatttccccttcttttttt-----ttctctatccttttctta-------gatacattct----tgtttcggcgccgtttcttttctcatttttcaatcaaaagtaCTTACTCgacacaaaaaaagcaaagattACGCGGAAG-CAAATCATATT-AAAATTTCTCATCTTGatattgaata-aaatgattcCGC-TTACCGTATAC----GTCtt-----aacttcagaaaaaatagtggTCTTTGTAACCACCACTTTTTTCCTATACCCTGTCTGACCGAACT-----------
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=-418.000000
s ce10.chrX             3495512 12 + 17718866 AACAAAAAAAGT
s caeRem4.Crem_Contig0   607644 12 -  4500979 AAAAAGCAAGGT
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold630  5661747  1 + 20921866 -----------T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905584  1 +  4147112 -----------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I
e cb4.chrX              8625156 31 + 21540570 I

a score=95876.000000
s ce10.chrX             3495524 296 + 17718866 GTCACCTCAACTTTATGTCACATTCTGTATTTCGGCG-CATTACC------------TAACAAAGCCTATTATTATCTTCTCATTCAAAAAAAAAGTGTTGCAAA-ATTA----------------ACTGTCACGAATCGGAAATTTACGTTTTTGAAAAGGTCGTCAAATTATTTTTTTTCATGCGCGATTGACAGTACTTTAGATAGACGACAAGGGAGGGGGAGGGAAGGGGTAA---AATACTAGAAGACCGCCCTATTTCAATCCAATTTGAAATGCATCCTTTGAACTATAGGTAGTGCGCAATAAATAAACAAAATCGTCTA-------
s cb4.chrX              8625187 223 + 21540570 GTCACTTCAAATTTCTGTcatattccatttttt-ttgccttCGTCCTTCGCTTTTGGCAACAAAGCCTATCATTATCTCTtcactcaaaaa-a----gtttcgaaacttg-----------gGCAGACTGTCACT-----------------------AAGgtcgtcaa-----ttttt--------caagtgaCAGTACTTTACATTTTGAT------------GGAGCGAGAGTTATAGGAT---------CCGCCCA---------------CGAATGCAT-----------------CGGCGcaataaataaacaaaattgtctg-------
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   607699 266 -  4500979 GTCACTTCAACTTAATGtcatattccatttttt-----catcgac------------CAACAAAGCCTATCATTATCTTCTCACTCAAAAATA----GTAGCGAATGTTGCAATGCCACAAAGCGGACTGTCACGAAATGGAAACTTACGTTATTGAAAAGGTCGTCAAATTATTTTGC--------GAAGTGACAGTACTTTACTTTttgaa------------aggggcggagtca---gac---------cCGCCCC------TTCCAATTTTAAATGCATCTTTTGAACTATA----CTGCgcaataaataaacaaaatcgTCTa-------
i caeRem4.Crem_Contig0  I 43 I 58
s caeSp111.Scaffold630  5661748 266 + 20921866 GTCACTTTAAATTTGTGTcatactcttttttt------tattgcc------------CAACAAAGCCTATCATTATCTTCTCACTCAAAAATA----GTTGCGAA-GTTG------CGCTAAGCCGACTGTCacgaaatggaaattttcgTTATTGAAAAGGTcgtcaattcatttttt-----ggtaaaGTGACAGtactttactttttttc-------------gaggCGGGGTAA---GAC---------CCGCCCt------atccaatttcaaattcatcttTTGGACAGTACTGCCTGCGcaataaataaacaaaatcgtcgt-----tt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905585 274 +  4147112 GTCACTTCAAGTTTAtgtcatattctttttttt-gcg-tATTACC------------CAACAAAGCCTATCATTATCTTCTCACTCAAAAACA----GTTGCGAA-GTTG------CGCTAAGCGGACTGTCACGAAATGAAAATCTCCGTTATTGAAAAGGTCggcaatttattttttt--ggagtaaAGTGACAgtactttacttttttgt-------------gagACGGGTTAA---GCC---------CCGCCCC------AACCAATTTGAAATGCATCTTTTGGTCTGTA----CTGCgcaataaataaacaaaatcgTCTGCGCCAtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=-318.000000
s ce10.chrX             3495820 6 + 17718866 TCTTCG---
s cb4.chrX              8625410 6 + 21540570 ---tcgtca
i cb4.chrX              C 0 I 58
s caeSp111.Scaffold630  5662014 6 + 20921866 tttctg---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905859 6 +  4147112 tttttG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I
e caeRem4.Crem_Contig0   607965 58 -  4500979 I

a score=-1617.000000
s ce10.chrX             3495826 30 + 17718866 CAAACGAGTTAAAATGTTCCTCC---------CAAAAAT
s caeSp111.Scaffold630  5662020 33 + 20921866 c---tgtttcggtttttttattcaatcgG---ATGAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905865 34 +  4147112 C----GCTTCgg-atttttattcattctgtcaaaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I
e cb4.chrX              8625416 58 + 21540570 I
e caeRem4.Crem_Contig0   607965 58 -  4500979 I

a score=1975.000000
s ce10.chrX             3495856 12 + 17718866 TCCTAT--GAATCA
s caeRem4.Crem_Contig0   608023 12 -  4500979 --TCATCGGAAACA
i caeRem4.Crem_Contig0  I 58 I 1
s caeSp111.Scaffold630  5662053 14 + 20921866 TTCAACCAGGAACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905899 14 +  4147112 ttcaatcggaAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I
e cb4.chrX              8625416 58 + 21540570 I

a score=-18842.000000
s ce10.chrX             3495868 33 + 17718866 ---------------------------------------GATTTAATACCTGTGAT----------------CACAAAATGAGAAAAA
s cb4.chrX              8625474 46 + 21540570 -----------------GATTTGAT-----CGG-----TGATCGTagacaagttttg---------------aaaaagaaaatgtaag
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   608036 54 -  4500979 -----------------GTTTAGTG-----AAA-----tattcatactttcatattGA-------Gtgtcacaaaaaaaaaagacaac
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5662067 64 + 20921866 AGATTGATTGAGAAAAGGTTCAggtaactacag-----taatctgataGAGGGATTAT-------------------AATTGGGCAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905913 79 +  4147112 AGTTT-------AAAAGGTGTTGAT--TTATGGGCATATAATCTTTTCAAAGTTATATAAAGTTAGTTTCCAAACAGAAATGGGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  736764 1464 -   823664 I

a score=141013.000000
s ce10.chrX             3495901 824 + 17718866  
s cb4.chrX              8625520 859 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   608090 800 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5662131 778 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1905992 764 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  738228 791 -   823664  
i caeJap4.Scaffold18194 I 1464 C 0

a score=-1082.000000
s ce10.chrX             3496725 6 + 17718866 TTATTT--
s cb4.chrX              8626379 5 + 21540570 -TACTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   608890 5 -  4500979 -TATTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1906756 6 +  4147112 CTGTTC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  739019 6 -   823664 --attttt
i caeJap4.Scaffold18194 C 0 I 39
e caeSp111.Scaffold630  5662909 0 + 20921866 C

a score=43.000000
s ce10.chrX             3496731 5 + 17718866 AAGTT
s cb4.chrX              8626384 5 + 21540570 TAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   608895 5 -  4500979 GGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1906762 5 +  4147112 AAGTT
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold18194  739025 39 -   823664 I
e caeSp111.Scaffold630  5662909 0 + 20921866 C

a score=-647.000000
s ce10.chrX             3496736 1 + 17718866 T--
s cb4.chrX              8626389 3 + 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   608900 1 -  4500979 T--
i caeRem4.Crem_Contig0  C 0 I 7
e caePb3.Scfld02_0      1906767 25 +  4147112 I
e caeJap4.Scaffold18194  739025 39 -   823664 I
e caeSp111.Scaffold630  5662909 0 + 20921866 C

a score=-67.000000
s ce10.chrX             3496737 17 + 17718866 TTTGAGAATCTATAATT
s cb4.chrX              8626392 17 + 21540570 TGTTCATTTccacaaat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1906767 25 +  4147112 I
e caeJap4.Scaffold18194  739025 39 -   823664 I
e caeSp111.Scaffold630  5662909  0 + 20921866 C
e caeRem4.Crem_Contig0   608901  7 -  4500979 I

a score=0.000000
s ce10.chrX             3496754 372 + 17718866 GTTTCTAAAATTAGCCTTATTACGTTGTATTTTTGGCGTAAGCTTTAGAAACTTTGGGAAATCCTTTAATAAAGTGCGCAGTCTCGGTAGAGACTGGATTACTGTAACCGACAGGTAGGGTTCTATAGGTAAATTCCATCGATCGACCGGAATAGATATAAATTAATCAAGAAAAATTAAAGGTTTTTTGTAGTCAAACTAGGACTTTCAAGGCTGGCATACCTGCCCGGTGGCCTCACGCCGCGGCGCAAAGCCCTAAATGTGTCGGGCACTGAGAAAAATAGACTTATTGAACTATATGCCGGGAGGTTTTAggcatgcgtcaggcaggcatcagaccgtgaaaccacgcctgcctcccatagaagccGG
e caePb3.Scfld02_0      1906767  25 +  4147112 I
e caeJap4.Scaffold18194  739025  39 -   823664 I
e cb4.chrX              8626409   0 + 21540570 C
e caeSp111.Scaffold630  5662909   0 + 20921866 C
e caeRem4.Crem_Contig0   608901   7 -  4500979 I

a score=439.000000
s ce10.chrX             3497126 19 + 17718866 AAGTTGAACAAACGACGGT
s caeSp111.Scaffold630  5662909 19 + 20921866 AAGTTTAATGTCTGTCAGT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1906767 25 +  4147112 I
e caeJap4.Scaffold18194  739025 39 -   823664 I
e cb4.chrX              8626409  0 + 21540570 C
e caeRem4.Crem_Contig0   608901  7 -  4500979 I

a score=-678.000000
s ce10.chrX             3497145 16 + 17718866 ATAATCTAAAATTGAC
s caeRem4.Crem_Contig0   608908 16 -  4500979 ATAGCCCGTAGTTCTC
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5662928 10 + 20921866 ATAACC-----TTAT-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1906767 25 +  4147112 I
e caeJap4.Scaffold18194  739025 39 -   823664 I
e cb4.chrX              8626409  0 + 21540570 C

a score=-114.000000
s ce10.chrX             3497161 1 + 17718866 A
s caeRem4.Crem_Contig0   608924 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1906767 25 +  4147112 I
e caeJap4.Scaffold18194  739025 39 -   823664 I
e cb4.chrX              8626409 0 + 21540570 C
e caeSp111.Scaffold630  5662938 0 + 20921866 C

a score=910.000000
s ce10.chrX             3497162 1 + 17718866 A
s caeRem4.Crem_Contig0   608925 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5662938 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1906792 1 +  4147112 a
i caePb3.Scfld02_0      I 25 I 1
s caeJap4.Scaffold18194  739064 1 -   823664 A
i caeJap4.Scaffold18194 I 39 C 0
e cb4.chrX              8626409 0 + 21540570 C

a score=1032493.000000
s ce10.chrX             3497163 1210 + 17718866  
s cb4.chrX              8626409 1450 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   608926 1163 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5662940 1152 + 20921866  
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1906794 1157 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  739065 1308 -   823664  
i caeJap4.Scaffold18194 C 0 I 1883

a score=-4270.000000
s ce10.chrX             3498373 29 + 17718866 ATAATTGGGTAGTTGTAGAAAAAACTGGT
s cb4.chrX              8627859  4 + 21540570 GGAA-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   610089  4 -  4500979 tCAA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5664092  4 + 20921866 TTGA-------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1907951  4 +  4147112 ctaA-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  740373 1883 -   823664 I

a score=272536.000000
s ce10.chrX             3498402 361 + 17718866 TCAATGGAACATTACAA-----AAAACTTTTGAAATACATTTCAGTTTGACCGCCACCTTGGCCTCAATCGGAGCTGCTTCGGTACCATCTGCCGGACTTGTCACTATGCTCTTAGTTCTTACTGCTGTCGGACTTCCAGTCAAGGATGTTTCCCTTATCGTTGCCGTCGATTGGCTTCTGTATGGATTTTGGAAA---AAA---AAAC---TTTCTATGACCTAG--TATTTTTCAGTGACAGAATCAGAACTTCCATCAATGTGCTCGGAGATGCCATGGGCGCCGGAATTGTCTACCACTACTCTAAAGCCGATCTTGATGCACATGACCGTCTTGCCGCGACTACCAGATCTCACTCAATCGGTTTTGTTTTC-
s cb4.chrX              8627863 335 + 21540570 ----------------------------TCCAATATATACTTCAGTTTAACCGCTACATTGGCTTCCATCGGAGCTGCTTCTGTTCCATCTGCCGGTCTTGTCACTATGCTCTTGGTGCTCACCGCCGTCGGTCTTCCAGTAAAGGACGTTTCTCTTATTGTCGCTGTTGATTGGCTTCTGTAAGACCtcctaatt---ttg---aact---tcatgattgtt-----ttttttgtagcgaCAGAATCAGAACCTCCATTAACGTTCTCGGAGACGCTATGGGTGCCGGTATTGTCTATCACTATTCCAAGGCCGATCTTGATGCTCATGACCGTGTAGCTGCTACCACCAGATCCCTTTCCATCGGTATTTAGATT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   610093 338 -  4500979 ----------------------------ATCACAACCAATTGCAGTTTGACCGCTACTTTGGCTTCCATTGGAGCTGCCTCTGTCCCATCTGCCGGTCTTGTCACTATGCTTTTGGTCCTCACCGCCGTCGGTCTTCCAGTCAAGGACGTTTCTCTTATTGTTGCTGTCGATTGGCTTCTGTAAGGACTATCAGCTAGAATA---AAGT---ACACCAACAGA-----ATTATTTCAGTGACAGAATCAGAACTTCCATCAACGTTCTCGGAGATGCTATGGGAGCTGGAATTGTTTACCATTATTCGAAGGCTGATCTCGATGCTCATGACCGTCTTGCTGCTACCACCAGATCCCACTCTATTGGTATAAATCTt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5664096 337 + 20921866 ----------------------------tttcaaactgttttcagtttgacCGCTACTTTGGCTTCTATCGGAGCTGCATCTGTTCCATCTGCTGGACTTGTCACCATGCTTTTGGTTCTTACCGCCGTCGGTCTTCCAGTAAAAGATGTTTCTCTCATTGTTGCTGTCGATTGGCTTCTGTGAGGAATATTGGgt---tca---aaat---ccaaaacgatcaa---cttttttcagtgacCGAATCAGAACTTCAATCAACGTTCTCGGAGATGCCATGGGAGCTGGAATCGTTTACCACTACTCGAAAGCAGATCTTGACGCCCACGATAGACTTGCTGCTACCACCAGATCTCATTCTATTGGTATTCacatt-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1907955 342 +  4147112 ----------------------------TGAAATATATATTTCAGTTTGACCGCAACTTTGGCTTCCATTGGAGCTGCCTCTGTTCCATCCGCTGGTCTTGTTACTATGCTTTTGGTTCTCACTGCCGTCGGACTTCCAGTTAAGGACGTCTCCCTTATTGTTGCTGTCGATTGGCTTCTGT-AAGAATACTTCAT---GAA---AACTATACCAacattgtttgttttttttttcagtgacagAATCAGAACTTCCATCAATGTTCTCGGAGATGCCATGGGAGCCGGAATCGTTTACCATTACTCCAAGGCTGACCTTGATGCCCATGATAGACTTGCTGCAACCACCAGATCTCACTCTATTGGTATGATCTTT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  742256 372 -   823664 TCAATGAGGCTTAGCAATAAccaaaactcaagaaaaaaaatttagtttgacTGCTACATTGGCATCCATCGGAGCTGCCTCGGTTCCATCAGCCGGACTCGTCACCATGCTCTTAGTTCTCACTGCTGTTGGTCTTCCAGTCAAAGACGTTTCATTGATTGTTGCTGTTGACTGGCTTCTGTAAGACATCCCCTAA---TTAATTAAGT---cgcttattttaaatttttctgtttagCGACCGAATCAGAACTTCCATTAATGTGCTTGGAGATGCCATGGGAGCAGGAATCGTTTACCACTATTCAAAGGCTGATTTGGATGCCCATGACAGACTTGCTGCAACCACTAGATCCCATTCCATTGGTACtagttttc
i caeJap4.Scaffold18194 I 1883 I 29

a score=-7946.000000
s ce10.chrX             3498763 25 + 17718866 T--GAATGTGACTACATGTTTTACTGA
s cb4.chrX              8628198 24 + 21540570 TAATGATTT--CTAatgaatatc-tga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   610431 18 -  4500979 t-gtaattt--c-----aaaata-tga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5664433 23 + 20921866 c--ttattt--ttcatcaaagtATTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1908297 23 +  4147112 C--AGATAT--ATTTTCTGTATACTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  742628 29 -   823664 I

a score=181894.000000
s ce10.chrX             3498788 502 + 17718866  
s cb4.chrX              8628222 521 + 21540570  
i cb4.chrX              C 0 I 1123
s caeRem4.Crem_Contig0   610449 538 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold630  5664456 479 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1908320 515 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  742657 474 -   823664  
i caeJap4.Scaffold18194 I 29 C 0

a score=2934.000000
s ce10.chrX             3499290 11 + 17718866 TAAAATTGAAA
s caeRem4.Crem_Contig0   611004 11 -  4500979 AAGCGGAAAAA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold630  5664936 11 + 20921866 aaaagttgaaa
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1908836 11 +  4147112 AAACgttgaat
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  743131 11 -   823664 aaaagcttaaa
i caeJap4.Scaffold18194 C 0 I 730
e cb4.chrX              8628743 1123 + 21540570 I

a score=-2098.000000
s ce10.chrX             3499301 8 + 17718866 CGTGGA--GT
s caeRem4.Crem_Contig0   611015 6 -  4500979 TGGGGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5664947 8 + 20921866 tttaGAAT--
i caeSp111.Scaffold630  C 0 I 56
s caePb3.Scfld02_0      1908847 6 +  4147112 tctgaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I

a score=-7320.000000
s ce10.chrX             3499309  88 + 17718866 GAGGTCAGATAATGTCTGAATACATAATTTAA--------------------GTCAGCATTTCAGAGAAT--------TGAAATAATTC-------ATTTTTACCTTCTAAGTTCACACTTTA----
s caeRem4.Crem_Contig0   611021  99 -  4500979 ----------ATAATCCAAT--AGCAATACAAGATA----------aga---attataatttttga-agtgttggtccaaaaataattttgaaggGACTGTTA--TGCGGAACAAATTCTTTCTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1908853 102 +  4147112 ----taaaataaaatttgattagGTGATTGAGGATATCGGTCGCGCAGACATATTAGCATTCATGACAACaacga---gaaaagaaatt--gataaattttaa--AGCAGGAC--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I
e caeSp111.Scaffold630  5664955  56 + 20921866 I

a score=10068.000000
s ce10.chrX             3499397 750 + 17718866  
s caeRem4.Crem_Contig0   611120 515 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5665011 566 + 20921866  
i caeSp111.Scaffold630  I 56 I 164
s caePb3.Scfld02_0      1908955 682 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I

a score=-35.000000
s ce10.chrX             3500147 8 + 17718866 CAACACTT--
s caeRem4.Crem_Contig0   611635 8 -  4500979 ATACAGTT--
i caeRem4.Crem_Contig0  C 0 I 167
s caePb3.Scfld02_0      1909637 8 +  4147112 --ACAGTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I
e caeSp111.Scaffold630  5665577 164 + 20921866 I

a score=373.000000
s ce10.chrX             3500155 4 + 17718866 TCAA
s caePb3.Scfld02_0      1909645 4 +  4147112 TCAA
i caePb3.Scfld02_0      C 0 I 168
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I
e caeSp111.Scaffold630  5665577 164 + 20921866 I
e caeRem4.Crem_Contig0   611643 167 -  4500979 I

a score=0.000000
s ce10.chrX             3500159 815 + 17718866  
e caePb3.Scfld02_0      1909649 168 +  4147112 I
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I
e caeSp111.Scaffold630  5665577 164 + 20921866 I
e caeRem4.Crem_Contig0   611643 167 -  4500979 I

a score=-274.000000
s ce10.chrX             3500974 3 + 17718866 -AAC
s caeRem4.Crem_Contig0   611810 3 -  4500979 aaa-
i caeRem4.Crem_Contig0  I 167 C 0
s caePb3.Scfld02_0      1909817 3 +  4147112 -AAC
i caePb3.Scfld02_0      I 168 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I
e caeSp111.Scaffold630  5665577 164 + 20921866 I

a score=1084.000000
s ce10.chrX             3500977 19 + 17718866 TGTTCCCACGTCA-AGGTGA
s caeRem4.Crem_Contig0   611813 14 -  4500979 tgttcCCTTCTCAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5665741 13 + 20921866 TGTTCCCACGTCA-------
i caeSp111.Scaffold630  I 164 C 0
s caePb3.Scfld02_0      1909820 13 +  4147112 TGTTCCTACACCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I
e cb4.chrX              8628743 1123 + 21540570 I

a score=17919.000000
s ce10.chrX             3500996 35 + 17718866 ACAATCATATTATCAAACCATCCCCCTCTTCGAAA
s cb4.chrX              8629866 35 + 21540570 ACAACCATATAATCAAATCGTCACCTTTTTCGGAA
i cb4.chrX              I 1123 C 0
s caeRem4.Crem_Contig0   611827 31 -  4500979 -CCATCATATAATCAAATCATCACCTTTT---GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5665754 31 + 20921866 ATAGTCATATAATCAAATCATCACCTTT----GAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1909833 31 +  4147112 ATAATCATATTATCAAATCATCACCTTT----GAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  743142 730 -   823664 I

a score=238494.000000
s ce10.chrX             3501031 507 + 17718866  
s cb4.chrX              8629901 528 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   611858 504 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold630  5665785 499 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1909864 508 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  743872 485 -   823664  
i caeJap4.Scaffold18194 I 730 C 0

a score=1384.000000
s ce10.chrX             3501538 18 + 17718866 ACTCTGCAGTTGAGGTGT
s cb4.chrX              8630432 18 + 21540570 TGGGAGCTATTGAGgttt
i cb4.chrX              I 3 I 41
s caeSp111.Scaffold630  5666284 18 + 20921866 TGACAGCAGCTGAGGTAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1910372 18 +  4147112 TGACAGCTATTGAGGTGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  744357  3 -   823664 ----------TGA-----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   612362 36 -  4500979 I

a score=-7055.000000
s ce10.chrX             3501556 28 + 17718866 CGTT----TCTCTGCTCCACCATGATAGGATT
s caeSp111.Scaffold630  5666302 18 + 20921866 TTTT----TATT---------AT-AGAAGACG
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      1910390 29 +  4147112 CCATAAAATATTCGAGTTaaaat-ataaga--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  744360 14 -   823664 -------ACGTTGGAG-----AA-ATA-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8630450 41 + 21540570 I
e caeRem4.Crem_Contig0   612362 36 -  4500979 I

a score=-5117.000000
s ce10.chrX             3501584 15 + 17718866 AAAATTTCTATTT---------TC
s caeRem4.Crem_Contig0   612398 22 -  4500979 aaaattccaacaaaaaagttac--
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  5666329 13 + 20921866 ATGGTTTCAATAC-----------
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      1910419  7 +  4147112 atgattt-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  744374  9 -   823664 GAGATCCCT---------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8630450 41 + 21540570 I

a score=99215.000000
s ce10.chrX             3501599 159 + 17718866 AGGTGCCCGTGCTCTCATGGTACGGATGGAACTATGCCAACGAAAACTTGCAGGATGATGTCTTTTTGACGCTCACTGGGTTTTCAACCTGCCCAGTAACAGTGTTGGCTAATAACTACGATAATGTTACTGGTCAAGGAGACACTTACATGGGTTTGT
s cb4.chrX              8630491 159 + 21540570 AGGTGCAAATTCCGAGCTGGTATGGATGGAATTACGCGATTACCAGCGTTCAGGATGACGTGTTCTTGACACTAATGGGATTCTCTACGTGTCCAGTGACCCTGCTTGCCAATAATTATGATATTTCGACCGGACAAGGAGATACGTTCATGGGTAAGT
i cb4.chrX              I 41 I 10
s caeRem4.Crem_Contig0   612420 159 -  4500979 agttcCCCGTTCCCAGTTGGTATGGTTGGGACTATGCCGGACAGAATGTTCAAAACGATGTATTCTTGACACTGATGGGGTATTCGACATGCGCAGTTACCGTCTTGGCTAACAATTTTGATAATGTCACAGGACAAGGAGATACATACATGGGTGAGA
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5666342 159 + 20921866 AGATTGATATTCCAAACTGGTATGGATGGAACTACGCCTCAGAGAGTGTACAGAATGACGTGTACTTGACACTCACCGGATATTCAACATGTCCAGTTACAGTCCTTGCTAACAATATTGATACCGTGACTGGACAAGGAGATTCTTACATGGGTTGGT
i caeSp111.Scaffold630  C 0 I 51
s caePb3.Scfld02_0      1910426 159 +  4147112 agGTTGAAATTCCAAACTGGTATGGATGGAACTATGCTGGAGCTAATGTTCAAGATGACGTCTATTTGACACTCATGGGATATTCCACCTGTCCAGTTACCGTTCTTGCTAATAACATTGACTCGCTTACAGGACAAGGAGATACCTTCATGGGTAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  744383 145 -   823664 --------------TCTTGGTATGGTTTTAATTATACTGGAAGAAACGTGCAAGATGACGTTTACTTGACCCTCGTGGCTTTCTCGACGTCCCCCGTTACCCTTCTTGCTAATAACTACGATAATGTAACAAAACAAGGAGACACCTACATGGGTTTGT
i caeJap4.Scaffold18194 C 0 I 40

a score=-18507.000000
s ce10.chrX             3501758 102 + 17718866 ----------------------------------------AAAAAAACGCTCTCCTTACAATTTATATAACTTGAACATTAAATT-----AAATTGAATTTCTAGAACAGCGAAAAGTAGCCGGTAGTTGCAGATTTATTTTTAAAT
s cb4.chrX              8630660 117 + 21540570 GGG----atgat----ttgaaattc----------tttctcCGGAAT------CATCAAAATTCATGTA--GTGATCAATCTGCCCTTATAAGATGAGTTAGCCGGA-ACTGAGCAATCAGttccatct---tctttttttgaaaat
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   612590 116 -  4500979 agaaaacaggaTCTTCTTGATGTCCTACTTAttagttattttgaaaa------cttcaaaatt--------gagaaaaatacagC-----AAGAAGTGCTAGT-----------GATTCAACCCCATCTa-gcatttattttcaaat
i caeRem4.Crem_Contig0  I 11 I 7
s caePb3.Scfld02_0      1910585  68 +  4147112 ----------------------------------TTTGCTACGAAAA------TCTTGTGGTTT-------GAGGCCTATACGTT-----AAGG--------------------TATGAGGCTTTATTTg-ggttttgcat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  744528  40 -   823664 I
e caeSp111.Scaffold630  5666501  51 + 20921866 I

a score=-36590.000000
s ce10.chrX             3501860 663 + 17718866  
s cb4.chrX              8630777 601 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1910653 425 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  744528  40 -   823664 I
e caeSp111.Scaffold630  5666501  51 + 20921866 I
e caeRem4.Crem_Contig0   612706   7 -  4500979 I

a score=1242.000000
s ce10.chrX             3502523 8 + 17718866 AAACAAAT
s cb4.chrX              8631378 8 + 21540570 AAACGAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5666552 8 + 20921866 aaactaat
i caeSp111.Scaffold630  I 51 C 0
e caePb3.Scfld02_0      1911078 0 +  4147112 C
e caeJap4.Scaffold18194  744528 40 -   823664 I
e caeRem4.Crem_Contig0   612706 7 -  4500979 I

a score=-33.000000
s ce10.chrX             3502531 4 + 17718866 ATTT
s cb4.chrX              8631386 4 + 21540570 ACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   612713 4 -  4500979 attt
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5666560 4 + 20921866 tttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1911078 1 +  4147112 ---c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  744528 40 -   823664 I

a score=588066.000000
s ce10.chrX             3502535 1605 + 17718866  
s cb4.chrX              8631390 1651 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   612717 1804 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5666564 1632 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1911079 1682 +  4147112  
i caePb3.Scfld02_0      C 0 I 126
s caeJap4.Scaffold18194  744568 1570 -   823664  
i caeJap4.Scaffold18194 I 40 C 0

a score=-85085.000000
s ce10.chrX             3504140 433 + 17718866  
s cb4.chrX              8633041 469 + 21540570  
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig0   614521 577 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5668196 494 + 20921866  
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      1912887 539 +  4147112  
i caePb3.Scfld02_0      I 126 I 11
s caeJap4.Scaffold18194  746138 376 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1112.000000
s ce10.chrX             3504573 110 + 17718866 CAACTTCGCCGACTAAATTGCCTACA------------------------------TCACCACCAAGTACCGGTAAGATTATATTTAAATTTT---------CAATGAA---TTTCTGCGCTCTTACAAATTTATAGTATTGTATTTATTTT
s caeRem4.Crem_Contig0   615104 121 -  4500979 CTTCTTCGCCGACTACGCCGACTACTGTAGTTAATCCAGTTA---------CAACTGCTTCACCAAGCACCGGTAAGCTTTCTTTGGGATTTCAGATCATAGCGATGTA----TGCTTATTT------------------Tgtgtttgcttt
i caeRem4.Crem_Contig0  I 6 I 5
s caeSp111.Scaffold630  5668701 126 + 20921866 CATCTTCGCCAACTGTGCCGACAACTAGCACTC------TCA---------CGACATCTTCACCGAAAACCGGTAAGATTTTGTTTAGTTCTCA-AGCTTTGTAGTGCA----TTTTAAGTT--TATTGATTTG----ATTAAGTTCACTTT
i caeSp111.Scaffold630  I 11 I 2
s caePb3.Scfld02_0      1913437 106 +  4147112 CATCTTCGCCAATTGCTCCAACAACTAGCACT------------------------GCTTCCCCAAGCCCGGGTAAGATCTTGATCAGTTTT----------TAATGCAAAAGTTATAAGTT--------GTTA----ATAATACCTGCACT
i caePb3.Scfld02_0      I 11 I 2
s caeJap4.Scaffold18194  746514 108 -   823664 CGTCTTCGCCGGCTAAACAGTCTACTGTCGCTTCGACAGTCACTGTAAAATCGACACCAACGCCAAGCACTGGTAAG-------------------------AAAAGAA---CTGCAGGgat----------------agaaaatttaattt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8633510 103 + 21540570 I

a score=-25797.000000
s ce10.chrX             3504683 178 + 17718866 CAGTCG---GAACTTCACCAACGGCTCCTGCAAATCTAACAACTCCAA------CGACTGCGCCAGTGAACCC---------AACTAGTTCAACAACTGCACCAACTGCTCCAGTGAACCCAACAAGCCCAA------------------CAACCGCACCT---------------------------------ACAGTGCCTCCAGTCacaacaactacgccaacaa---ctactactagcaccacgac
s cb4.chrX              8633613 226 + 21540570 CAGCTACATCA---TCTACGGCGGCTCCAACAAACCCACCAGTCACGA------CTACTCAGCCTGCAGCTAC---------ATCAACTCCAACTGTCGCAACTGTAGCTCCG------CCAGCTTCCACCAGCACACAGCCAGTAGTGACTACTGTAACTGTTCCTGTAGTAACCACCCAAACTGTTCCCAACACTCCACCCCCATCTTCATCGGCTGCTCCACCGACTTCTACGGTAGCTACCACGAC
i cb4.chrX              I 103 I 103
s caeRem4.Crem_Contig0   615230 157 -  4500979 tagCTG---GA---ACCACAGTGACAACCACAGCGCCGCCAGTTA------------------CTGTGACCAC---------ACCCA---CAACTGCACCAACAGTTACTACA------CCAACAACTACCA------------CACCGACCACTACAA-----------------------------------AACCCACGACTACAGTCA-AGACAACTCTAACAA---CCGTGACAACTCCAACAAC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5668829 136 + 20921866 TAGCTG---GT---CCAACTGTGACCACTCCAA------------------------------GTGCTGCTCC---------ACCAGTAACAACAGCAACTACAGCAACTCCA------CCAGCTGTTACTA------------------CTACAACAACTGTC------------------------------GCGCCACCACCAACAT------------TAACCA---CCACAACAGCTCGACCAGC
i caeSp111.Scaffold630  I 2 I 6
s caePb3.Scfld02_0      1913545 127 +  4147112 CAGTTG---GA---TCCACAGTGACCACACCAA---------------------------------CAGTTGC---------ACCAGTTACTACAACCGTAACAGTCCCACAA------CCACCAGT---CA------------------CTACAACAACTGTT------------------------------GCACCACCACCAG---------------TCACCA---CTACTACTGCTAAACCACC
i caePb3.Scfld02_0      I 2 I 6
s caeJap4.Scaffold18194  746622 157 -   823664 ------------------caataacctttattaaacagtTAGTTTCAGTTGCTTCAACTCAGTCTACGGCTACTCCGCAAAAACCGGTGACATCAACATCCACAGTTACTACT------CCAGCTGC---AA------------------CAACTAAAACT---------------------------------ACACCAGCTGCAACTACAAAAAGTACTCCAGCTG---CAACTAC------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-10000.000000
s ce10.chrX             3504861 317 + 17718866 cacgacgacaacta---------caaccac------gacgactcaaaccaccccgacaa---ctccggtggtcactacaccgtcc------acaataacaccaacaacTCGGCCTGTAactcaacctgcatctcaac------cagctactcaacctgctacCACGCCGA---------CAACAACCAT-------CCCAACA--ACCACTCAATTCTCTTCCGCGGTTTCTGTGGCTCTTCCTGTTGTGCTTACCATGTTCTTTGCCCTCTTC---TAAC------CTCATTTA-----------------TTTAATTATT---ACTTTT---------CTCTTTCATTTGTTT------TATCATA---------------AAGTT---------TTGAA-------ATAAAAA----AAAC--TTCTTGAGTAGAAAACATTA
s cb4.chrX              8633942 340 + 21540570 cacaacaccaaccaccgcagcaaccaccacaactaaagctgctgcaaccacaccaacaa------caGTGGTCACGACGCCAACGGTTCCAGTTACAACTCCAACAACTCCAACAACTACAAAGCCAACACCAAAGG---------------TAGTAACCACTCCGACAA---------CAGTAACTACACAAGCTCCAAGTACTTCAACTCAATCCTCATCGATAGTTTCTACAGCTCTTCCAATGGTTCTTACCATTTTCGTTGCTCTCTTTCTCTAAAGTGCGTATAATTTA-----------------AATTATCATA---ACTTTATA-------CTTTTATGTCTGTGT------CACAATA-------------Aagggtt---------tcaaaa------attgaaa----agaa--attttg---------ctTCA
i cb4.chrX              I 103 C 0
s caeRem4.Crem_Contig0   615387 306 -  4500979 CGTGACAACGACTA-------AACCAACGC-----AAGCCGCGGTGACAACTCCGACAACTGCTCCGGTGACCACAACAACGAAG---------AAAACTACCACAACACCCACAACTACGACATCTAC---------------------------AACTACTACCACAG---------TTGCAACAAC-----CACCAAG-------------TTTTCTTCAGTGATTTCCCTGGCCACTCCAGTTGTCATTActgttctcttttctcttttt---taaa------acaattta-----------------attTATAATACTCATTTTGGA-------TTTCTCTTTCACTATTTAACACATAAcg-------------ataaatcgaaaaataaccaaac------attgaaa----acactttttttg---------cttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5668971 301 + 20921866 CTCTGCAACAACTA-------AACCAACTC------AAC--CAGCAACTTCTTCAACGACTGCTCCAGTGACATCTGCAACGACTGTCGTTACTAAAGGACCTTCTAGTTctacaactacaaca---------------------------------accactacaacga---------caactactacacaaactccaagcacttccacacaaTCGTCTTCAGTTATTTCCTTGACTCTTCCAATTGTTCTTACTGTTCTCtttgttttattc-------------aaaaatta-----------------aattaattta---ataTTTCA-------TATTATGCTCTGtta------taaaatc------------tgaaaatt---------ttgaaa------attagat----taac--ttttgt---------tttca
i caeSp111.Scaffold630  I 6 I 8
s caePb3.Scfld02_0      1913678 353 +  4147112 TACAGTTACAACCA-------AGCCAACTC------AGC--CAGTCACCACACCAACAAATCCTCCAGTGACTACACCAAAGAATGCCCCAGTGACAACGCCATCAACTGCCCCAGTAACAACACCAACAGTCCAAACCACACAGACTGTTCCAGTTACCACTCCACCAGTTACTGTTCCAGTTACTACTGTAGCTCCCAGCACTACTACACAGTCGTCTTCGATGGTTTCTATTGCCCTTCCAGTTGTTCTTACTTTCTTATTTGCTCTTTTC-------------TGAGTTTA-----------------ATGTTAAATT---ATGTtata-------cattttgatttttcc------cgagata------------taaaaata---------ttgaaaagatcCATTCAATAATACAAA--TTTGAG---------GCACA
i caePb3.Scfld02_0      I 6 I 30
s caeJap4.Scaffold18194  746779 310 -   823664 ------------------------------------------AAAAACTACTCCAGTTGCCACTCAGTCAATTCCCACAAGTACAGTTCCTCAAACGAATACTTCAACGACTCCAACTGTGCCA---------------------------------ATCACGTCGGCCA---------CTGACACTCC------ACCAAGTACCACAACGGATTCTTCTTCTACTATCTCACTTGTCATACCTGCGCTCtttacaattttctttgcaatcgtt---taattt----tttatttgttttttttgcagtgaatgtttctttta---attttataaATAATTTGTCTTCATTGTTTT------TAAGATAGGAGCTTTCCAaggaaatta---------atgaaa------aaccAAT----ACAC--AACTGC---------TATCA
i caeJap4.Scaffold18194 C 0 I 8

a score=-4839.000000
s ce10.chrX             3505178 20 + 17718866 ------TTCCG----TGACCATTTTCAACC
s cb4.chrX              8634282 17 + 21540570 ------TTTCG----TTTTATTTCA---TC
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   615693 19 -  4500979 -------ttcG----TTTCAATTCATATTC
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold630  5669280 24 + 20921866 ------TCCCGAGCTGTATAATTCACAAGT
i caeSp111.Scaffold630  I 8 I 5
s caeJap4.Scaffold18194  747097 20 -   823664 TTCATTTTCCG---CTTTTAACT-------
i caeJap4.Scaffold18194 I 8 C 0
e caePb3.Scfld02_0      1914031 30 +  4147112 I

a score=-71927.000000
s ce10.chrX             3505198 147 + 17718866 -----------------------GCTTCGAAATGAATTGAAAAT--AATAAAAAC-GAT-TATTTCTTATC----------TGTAACTGT------------ATGTGATTCAC-------------------------------CAGTCACTTTGTTCCAGAATTTTATTATTTGACGA------------------------TATAATAATGTAACACAGAG------------AAAAGAAAGTGAGATCATTAAA-TAC-------ATT
s cb4.chrX              8634337 148 + 21540570 -----------------------TCat------------gaaga--aataaaaat-aat-aat-------------gaaaacCCGACCTGGTGTGT------CTGTTAT-----------------------------------CAGTTGTGTTGGACAA--ATTCTATGTCTTCAACTATGCATGATTCATTTCTATCA---TAGAATCAaatgaaa-----------------tcataaaaataatgc-attttatttc-------att
i cb4.chrX              I 38 I 33
s caeRem4.Crem_Contig0   615753 195 -  4500979 -----------------------TCACCGgca-----agaaaac--aataaaaac-gaT-GACTTGTTATCAGTTGGACAATGCAATTCTATGCCTCAAA--CTGTGattcactt-----tgaaaaatcatacATGGGAAAGAATCGTCATATTGGAGAG-CAGTTTATTATTTAAAACATATTCCGTTGATTAGTAATAC--TGTAAATAAGTA------------------------AGAAGTAATG---GTATAGTTA-------TTT
i caeRem4.Crem_Contig0  I 41 I 25
s caeSp111.Scaffold630  5669309 144 + 20921866 -----------------------actcaaaaa-----tggaaat--aataaaaag-aaacgacTTGTTATCAGTAGAACAATGTAATTTTATGTCTTCAAATGtgtgattcattt-----tca---------------------gatt------------------cgcTTTTAGAAACATGCA-------------------CAAAAAAGGTCGAG------------------GGAAAAAAGTAAGgt--------ttc-------att
i caeSp111.Scaffold630  I 5 I 126
s caePb3.Scfld02_0      1914061 182 +  4147112 ------------------------------------------------------------GTCTTGTTATCAGTTGAACAATGTATTTCTATGTCTTTAATTTTGTGAATCACCT-----TCA---------------------GAATTATACATAGGCA--AGGCCGTCATTCAAAATATGCAACgtttattt-tattattttgtaaATATTCAAGACTGTAATacattgatttgaaaaaacgtaAATTGATAATTGTTCAAGGgagatc
i caePb3.Scfld02_0      I 30 I 12
s caeJap4.Scaffold18194  747117 195 -   823664 TTTACGATTATTTGATTCACCTTACATTGAAG-----TGAAAATGCAATGAAAACTGAT-TATTTCGAATTGCTCGTTCGCAAAAATCGTCTGGTTT-----TCATGAATAACATAACACAGA---------------------AAACTGTGAAAGGGTAGAACAATACAAATGAAAAGATATA---TTGAGTCGCAT-----TGTGAagggaaaatga----------------gaaaacaaATGGTGTT--------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-21921.000000
s ce10.chrX             3505345  96 + 17718866 ----------------------GGAGGATAGAATAAAGTTTGTTGTTTT-------GCATT------ATAAGAAATGATGAATACAGTATTTTGTTG---TGTATTGGTTACCG-TTTAAAAGAGTGATGATGAT----
s cb4.chrX              8634518  56 + 21540570 ----------------------GTGGGATAGGGGGAGAA--------------------------------GAATTAA-GAACACAGAATTTT----------------------TGTAAGAGATCGATGCGT------
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   615973  71 -  4500979 ----------------------CGGGGACGgttggaaaataa--------------gaaa-------gtgtAAAATGA-GAGAACAAAATTATATGA------------------CTCAGTAGATTGATGTGT------
i caeRem4.Crem_Contig0  I 25 C 0
s caePb3.Scfld02_0      1914255  78 +  4147112 ----------------------aacggatgattcaaaattca--------------aaaat------atatgggACGA-TAAGACGGGATACTTTGG------------TACTGTTTTAGGTGTGTGATGAGG------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194  747312 134 -   823664 AGAAAAGGCTTTTGGGTGAGAGGAGGAATAGAGTGGGCTTTTATATTTGCCACAGAGAGatcttttcaaaaatattaa-tcACAAtaaatttcttatttttggataaaatatc--tgaaaaagaagaatgaaT--TCAA
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5669453 126 + 20921866 I

a score=-19225.000000
s ce10.chrX             3505441  96 + 17718866 ----GTGCATTCAATA--ATAGATTATGATTCGTTTTTAGAATGACATAT-------GCAGACAAGA-AAATAAGTTAT----------------------------TGTAACAAGTG-TGACTGGAATTGAAACGAGA
s cb4.chrX              8634574  94 + 21540570 --------------TT--AATAATCAGGGTATGGATGCAAAAATAAGTTATTTTCCGATAGATAAGGCCAAATAATGAT----------------------------GCAGGTAATAA-TTTAGTGAGAGAAATCAAAT
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig0   616044  93 -  4500979 ----GCGGGACCAATT--TAAGATTATGGTTTTGgtgtgaaatgaaaaga-------gtAGGCAAATATAAATTAT--------------------------------TAGGCGACAAGCGTAACGGGAT-AGTCATAG
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  5669579  97 + 20921866 ----ATACAGTTTTTA--TGAGATTATGATTGTGTTCTGAAATGACATGT-------GCAGACAAGACAAATATCTCAG----------------------------GGAACTGATAG-TCGACGGAAAAAAGGCGAAA
i caeSp111.Scaffold630  I 126 C 0
s caePb3.Scfld02_0      1914333  98 +  4147112 ----GTGCAACCAATAATTAAGATTATGAATCAGTATTAAAATGACATGT-------GGAGACAAGACAAATAAATTAA----------------------------CGGGATGATTA-T-gactgaacaaaaatgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  747446 124 -   823664 AGGAATTCAAAGAAGA--CAGATTTCGTTTTTTgttataaaat----ttt-------tcagaaaaaa-aaagaagtgatGTGTGACCGTGCTTGGATTATGATTTTGGGAAGGTATTA-CAGTTGGAGTGGAAATGGGC
i caeJap4.Scaffold18194 C 0 C 0

a score=-3243.000000
s ce10.chrX             3505537 25 + 17718866 -----AGATAAT----------AAATGAAATCACATTATT--------------
s caeRem4.Crem_Contig0   616144 25 -  4500979 -----AGACAAG----------TAGAAAGATCACATGAGT--------------
i caeRem4.Crem_Contig0  I 7 I 1
s caeSp111.Scaffold630  5669676 22 + 20921866 -----AGTC-------------TGACGGTATCACatcatt--------------
i caeSp111.Scaffold630  C 0 I 40
s caePb3.Scfld02_0      1914431 19 +  4147112 -----a----------------cataagTATCACATCATT--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  747570 54 -   823664 ataataaataattatttgaagaTAAAAATATCAAACACTTAATTAGAATTTATC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8634668 63 + 21540570 I

a score=-5407.000000
s ce10.chrX             3505562 52 + 17718866 ACTTGGTCATTATTTGTAATCTTGAAGCCTTGGGATTC------TTGATTCTTATT----AT
s caeRem4.Crem_Contig0   616170 59 -  4500979 AATTAAACAATGCTCGCATCGTTGTGAGCAGCCGAATTGATGTGTTGGTTGTTCTTCAT---
i caeRem4.Crem_Contig0  I 1 I 6
s caePb3.Scfld02_0      1914450 39 +  4147112 --TTAATCA-----------GTAGAAGGTTTCGGAGTcaa----ttgattatttct------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  747624 55 -   823664 AACTGATC--TATTTGCGGTGTCGCTGAATTTGGAGGAGA----TCCGTTACCATTTATCA-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8634668 63 + 21540570 I
e caeSp111.Scaffold630  5669698 40 + 20921866 I

a score=2131.000000
s ce10.chrX             3505614 5 + 17718866 GGGTA
s cb4.chrX              8634731 5 + 21540570 GAGCA
i cb4.chrX              I 63 C 0
s caeRem4.Crem_Contig0   616235 5 -  4500979 GAGTA
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0      1914489 5 +  4147112 gaGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  747679 5 -   823664 GACTG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5669698 40 + 20921866 I

a score=192387.000000
s ce10.chrX             3505619 418 + 17718866 TCACAAAGCAACTTGAAA---AACAATTGACTGAATACATTGGTGTATGTGCTGCTATTATAA---ACGTTTACAGGTTTAGTTATCTCATCCGCACTGTTGCTGTCCACACTACCAGCGCTCTTCTCGACACGCTTTCTTCTTCTTGGTCTGTACACGTAGTCTGGATGGGCATTGAAATGCTCTTCGCGGAGTTGCTTTGCCTGCAAATGTA--CAATTATTTACAATTATTT----CGCGGAATATAGA--------AAATTTCAACTGATATCG-CCGTCAA-----------ACTCACGCGCTCAACAAAAGGAACTTTCTCGTGCTCCTCCATTTTTCGCCACTCAGCTCCAAGCATCTTTGAAATGTCAGAGTTGTGAAATTTCTGTCCTGTTGCTGCAATTTGTTGGCGACGTTGTTGCGACCACACCTTA--ATATAATCATT
s cb4.chrX              8634736 356 + 21540570 -------------------------TCATGGAGCAGACCAAAGAGTTGTTGTTGTTTG--------------GGAAAT-CACCCAACTCATCCGACGGAgcactttcaaaacttccggTGCTTTTTACAATACGCTTTCTTCTGCGTGGCCGGTAGACGTAGTCAGGGTAAGTGATGAAGTGCTCTTCACGGAGTTGTTTGGCCTGTAAT-------------------TCATCA----CAATGAACATTAA--------AGGGTTTCCCTTT------------A-----------ACTCACGCGCTCAACAAATGGAACTTTTTCCTCATCAGCCATCGCGCGCCACTCGACAcctaacatttttgaaatatcggaattgtgaaatttttgtcCGGTTGCCGAAATTTGTTGACGCCGTTGTTGTGACCACACCTAG--AAATTAAAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   616240 389 -  4500979 -------------------------GCTCTGAGAAGAAAGCGGCATAGATGTTAGTTGAAGCA------GTTGGAGATCCGGATGCCTCATCAGTGCTGACACTATCAACACTTCCCGTGCTTTTTCCGATacgctttcttcttcttggtcTGTAGACGTAGTCTGGGTAGGTGTGAAAGTGTTCTTCACGGAGTTGTTTGGCCTGTAAG------------TCAACGATCATTA----CActagaaataaacaaatagGAGAGTTTCATTGTTATCA---AGTAA-----------ACTCACGCGGTcaacaaatggaattttttcatcatCGGCCATCTTACGCCACTCAGCTCCGAgcattttcgaaatgtccgaATTGTGAAATTTCTGGCCTGTTGCAGCAATCTGTTGTCTCCGTTGTTGTGACCACACCTTA--ATTTAAGAAAT
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold630  5669738 414 + 20921866 TCTCAACACGACTGCA--------AGTGCAGTGAGCAAGCTAGCAAACGGGTTGATAGGAGAA---ATGATCGGAGATCCGGATGCCTCATCAGTACTGACACTGTCAATACTTCCCGTACTCTTTCCAATAcgctttcttcttctcggtCTGTACACGTAATCCGGGTAAGTATGGAAGTGTTCTTCACGCAGTTGCTTTGCCTGAAAT-------------CAGCATTAATTG----CA--AGTAACGAGCTAGTGACAGAGATTCTCtgttatc--------atttttcttttcactcaCGCGCTCaacaaatggaattttttcgtGTTCAGCCATTTTGCGCCACTCAGCTCCAagcattttcgaaatatcaGAGTTGTGAAATTTTTGTCCTGTTGCCGCAATCTGCTGTCTTCTCTGTTGTGACCACACCTTAACAAACAATGAAT
i caeSp111.Scaffold630  I 40 C 0
s caePb3.Scfld02_0      1914494 391 +  4147112 --------TTAGTGCA--------AGTGCGGCCATGAAGTTGGCATATGGAGTGGCAATAGCATTCATAGTTGGAGATCCCGATGCTTCATCTGTACTGACACTGTCTACACTCCCGGTGCTCTTCTCAATAcgctttcttcttcttggtctGTACACGTAGTCCGGGTAAGTAACAAAATGTTCCTCGCGGAGTTGTTTGGCCTACAAT---------------ATATTTGATG-----------AGCAAGCAAATTAGAAAGGTTTCCTGTTATC--------A-----------ACTCACGCGCTCAACAAAAGGAATTTTTTCGTGTTCCGCCATTGTGCGCCATTCTGCACCgagcattttcgaaatatcagAATTGTGAAATTTCTGTCCTGTTGCCGCAATCTGCTGCCTGCGTTGTTGTGACCACACCTAAACAAACAGTAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  747684 434 -   823664 TTTCGAATCAACTGTTGAACGAACAACTGACAAAATGCATTCGAGTACATGTTATTATAATTT---AGTGTAGGAGATCCTGATGCATCATCTGTGTTCAAACTGTCCACACTTCCAGAACCTTTTCCCATCCTCTTCCGACGTCGTGGTCTATAGACGTAATCGGGATGATCACGAAAATGTTCTTCACGAAGTTGTTTGGCCTGCAAAACGAAGCACAAATATACAATTATTAGACACAATCGTTGCGAA--ATTGTGCATGTTTCATAGATATGAGGGGGGTA-----------ACGTACACGATCAACAAATGGTATCTTGTCACGTTCGTCCATTTTTCGCCATTCTGCTCCGAGCATTTTTGATATGTCCGAGTTGTGAAATTTTTGTCCGGTCGCTGAAATTTGCTGGCGTCGTTGTTGAGACCATACCTAA--AAGTAATAGTT
i caeJap4.Scaffold18194 C 0 C 0

a score=-7434.000000
s ce10.chrX             3506037 10 + 17718866 -------TGATTTCCTT---
s cb4.chrX              8635092  2 + 21540570 ---------------GC---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5670152  4 + 20921866 -------------TGTT---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1914885  4 +  4147112 -------------AGAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  748118 20 -   823664 GTGTTATTTATCTTATCCTT
i caeJap4.Scaffold18194 C 0 I 192
e caeRem4.Crem_Contig0   616629 23 -  4500979 I

a score=182.000000
s ce10.chrX             3506047 8 + 17718866 ATTTTCCA
s cb4.chrX              8635094 8 + 21540570 ATATTCGA
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold630  5670156 6 + 20921866 GC--TAGA
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      1914889 8 +  4147112 ACATTAGA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194  748330 8 -   823664 ATTTTCCA
i caeJap4.Scaffold18194 I 192 C 0
e caeRem4.Crem_Contig0   616629 23 -  4500979 I

a score=36343.000000
s ce10.chrX             3506055 59 + 17718866 TGTT--TGA-ACGTTTATTACCATAAAAGCATTCATTGGTCTTTTTATGCGTGGTTCGCGTG
s cb4.chrX              8635111 53 + 21540570 AAGG--TGA-------ATAACCATAAATGCATTCATTGGGCGTTTGATTCGTTCTTCGCGTG
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   616652 55 -  4500979 TGGGCTTGA-------ATTACCATGAATGCATTCATTGGTCTTTTGATGCGAGTTTCACGTG
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold630  5670164 59 + 20921866 TGCG--CGA-TCTAATATTACCATAAAAGCATTCATTGGTCTTTTGATACGAGATTCCCGAG
i caeSp111.Scaffold630  I 2 I 54
s caePb3.Scfld02_0      1914907 53 +  4147112 TGCA--TGA-------ATCACCATAAATGCATTCATTGGTCTTTTAATGCGAGATTCTCGAG
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194  748338 60 -   823664 TATA--AGAAAAATATCTTACCATGAACGCATTCATCGGTCTTTTAATGCGAGCCTCCCGCG
i caeJap4.Scaffold18194 C 0 C 0

a score=-10338.000000
s ce10.chrX             3506114 60 + 17718866 C--AGTGCGGGGCTGTGAAGCCGATTTTTGTGAAGAATTCACAACATCTTTGATAGAGTTTC
s cb4.chrX              8635164 52 + 21540570 ---GGCTCACAGCTGACATCTCACGTTTGGAGCATCGT-------TTGGTTGCTGAGGACTT
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   616707 52 -  4500979 ---TTGTTTTTATTGGTGAATCGCTCTTTGATAAACTT-------TTGTCAGCTGCAGATTT
i caeRem4.Crem_Contig0  C 0 I 20
s caePb3.Scfld02_0      1914960 52 +  4147112 TT-GGCTTTGCACTGGCAACT-GCTTTAGAAGGATCA--------ATGGTAGATCTGGATTC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194  748398 57 -   823664 -TAGTTTTCAGGGTGGTA----ACACTCGAAACACTGTTGACGGTATTGCTGATCGAAACTG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5670223 54 + 20921866 I

a score=-15595.000000
s ce10.chrX             3506174 118 + 17718866 CATTCACATAATGT----CCGATTATGTCAGCAATTGTCGATG----------CTTG---------------AACAGATGAAAT--------CACGTTT---GGAGATTCGGT---------CGG---------------------AGA---------CTCCGGAGAGCTTGGTGA---------------------------GCTCAAACCATCTGAAT------CGTT
s cb4.chrX              8635236 136 + 21540570 -------------------AAACCATATCTTCATCGGGCATGTCGGCAACGAGCTTG---------------AA---ATCAAA---------AGGGTCCGATGGAGCGTCGAT---------TGGGGTTTGTGGAATCGCCATATCAGA---------ATCCGTGGAGCTTCG------------------------------GCGGgatctttcagaatctcttccGTT
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   616779  94 -  4500979 -------------------CCATCATCTCAGCATCGGAGATTT----------CTTG---------------AAT--ATCAGAC--------AAAATCT----GAGTGTCAGA---------TGG---------------------AGA---------ATCTGTGCGACT---------------------------------GGGAGAGCTATCCGAGT------CGTT
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold630  5670277 112 + 20921866 CAGTCATAT----------TAATGACTTCAGCAAGAGTCATTG----------TTTG---------------AAC--ATCAGCTACTTGTTTAAAGTTT---GGAGAATCTGA---------TGG---------------------AGA---------CTCGCTGGGAGT---------------------------------GCTCGATCTATCCGAAT------CGTT
i caeSp111.Scaffold630  I 54 C 0
s caePb3.Scfld02_0      1915018 126 +  4147112 ----CAGAT----------TGATTATCTCAGCAAGTGTCATGG----------TTTG---------------AAC--ATCAGCCTTTTCCTTGTAGGAT---GGAGAATCCgatttgaaagtttg---------------------agaGTCTTGATCCTCACTTGGAGT---------------------------------ACTTGAACTATCCGAGT------CGTT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194  748455 160 -   823664 -CTGCACTTGCTGTTTGGCTGATTATTTCGGCAAGCGTCATTC----------CTGGAGAGTTCGATTTCGAAAC--AACAGGC--------AGTGATT----GGTTTTCAAT---------CGA---------------------CGC---------CTCAAGTGGAGTAGGTGACTTTCGCTTTTCTGGTGTGATAGAACGGTTAAAACTGTCAGAAC------CGTT
i caeJap4.Scaffold18194 C 0 I 35

a score=-2539.000000
s ce10.chrX             3506292 32 + 17718866 GACTTGCTCAAACGATTTAACCGTAGCCATGA
s cb4.chrX              8635372 26 + 21540570 GGTGGCA------TCACTAGCAGACATTACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   616873 32 -  4500979 GGTGATATCTGTCTCACTCGGAGAAGACATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5670389 32 + 20921866 TCCATTCTCAAGCTCTTTTGCGGCTGTTATCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1915144 32 +  4147112 CCCAGTTTCCAGTTCTTTGGAAGCCGAAATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  748615 35 -   823664 I

a score=255049.000000
s ce10.chrX             3506324 1043 + 17718866  
s cb4.chrX              8635398 1113 + 21540570  
i cb4.chrX              C 0 I 2712
s caeRem4.Crem_Contig0   616905 1011 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5670421 1064 + 20921866  
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      1915176 1012 +  4147112  
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194  748650 1109 -   823664  
i caeJap4.Scaffold18194 I 35 C 0

a score=-30329.000000
s ce10.chrX             3507367  60 + 17718866 --------------G-----CTATT---------------------------------------------------------------------------------------TACAAGCTCTCGGAATCCAAGATAAA--GAAGGAG-----AGGTGGTGAAGTAA------------------------------------------------------CAAAAC-------C
s caeRem4.Crem_Contig0   617928 205 -  4500979 --------------GAATGTGTAttcacttcattttgaaatggagTGGGATAAAGCATGAGTAGGAGGACTGAGTTACGAGATCTCGTGCGTTGCCATTTTTGGAATCGGAGTACA-------------CAAAAGACA--CAAGGAGGGCGTAAgttatgaattgaaaatatttagaatACAATTGAATGATAATGATCTATTGTGTGCGAAATCTCACCCAAACTACGGTAAC
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5671497  70 + 20921866 --------------GTTGGTGTATT---------------------------------------------------------------------------------------TACa-------------cgaatgaaattgaatgag-atAGAGGCAGTGGTTTGA---------------------------------------GCGcgtgttttca---aaatt-------t
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      1916200  61 +  4147112 --------------G-----ATATT---------------------------------------------------------------------------------------TAca-------------caaaagaaa--gaaggag---agaagcTACGA---AA---------------------------------------GCGCGTGCTTCAACACCACTT-------T
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194  749759  57 -   823664 GATATTGTTAGGATG-----GTGTT---------------------------------------------------------------------------------------TACGTGAT---------TGGCCGGGA--GAAGGAG-----GAGTTACAAAACC---------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 I 2058
e cb4.chrX              8636511 2712 + 21540570 I

a score=-15045.000000
s ce10.chrX             3507427 556 + 17718866  
s caeRem4.Crem_Contig0   618133 668 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5671567 730 + 20921866  
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      1916261 696 +  4147112  
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I

a score=-1092.000000
s ce10.chrX             3507983 7 + 17718866 ACATGCT-
s caeRem4.Crem_Contig0   618801 7 -  4500979 -CCTCGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5672301 7 + 20921866 ACAAGGT-
i caeSp111.Scaffold630  I 4 C 0
e caePb3.Scfld02_0      1916957 17 +  4147112 I
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I

a score=10689.000000
s ce10.chrX             3507990 67 + 17718866 ---TTATCAGGGTTTGGTGGTGGGGGGTTGGTGGTAAAGCGCATTTGAGCAGAATCGAAATGTGCACTTT
s caeRem4.Crem_Contig0   618808 61 -  4500979 ATATCTTAAGAGGAAATTGG---------GGATGTGGGATGCATTTGAGCATAGGCAAAATGTGTACTTT
i caeRem4.Crem_Contig0  C 0 I 331
s caeSp111.Scaffold630  5672308 58 + 20921866 ---TTATCAGGGTAGAAAGG---------GGTTGCGGAGGGCATTTGAGCATAGTCACAATGTGCACTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1916974 57 +  4147112 ---TTATCAAGGAATCAGAG---------CTTTGT-TAGGGCATTTGAGCGGATACAAAATGTGCACTTT
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I

a score=3164.000000
s ce10.chrX             3508057 54 + 17718866 TGCGTATATTCTTGGAATCATTAGAATAATTTGTGCAAAATCTCAAGATTAGAA
s caeSp111.Scaffold630  5672366 42 + 20921866 TGCGGATATTCTTGGTATAA------------ATGCAAAAGTTACAGATTAAAA
i caeSp111.Scaffold630  C 0 I 152
s caePb3.Scfld02_0      1917031 27 +  4147112 CGCGGATATTCTTGGTATAA------------GTGCAAA---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I
e caeRem4.Crem_Contig0   618869 331 -  4500979 I

a score=-3745.000000
s ce10.chrX             3508111 296 + 17718866 GAAAATGGGTCAGGCGAATGTAAAAACGTTCTTATCAATTTTGATCTGCAATTTTGGGGTAAAGGTTCCATACAAATTCCTTTACTTTTGTAAGCTACCGTAACCCGTAACTTGCAATCCTGCTCAAGTCCGAGTTGTCCGAGGACATTTTTTCTTAACTATAAATGGAAACACAAGTGAAACAAAAATTTCACATCAAAATCTGGAGAAAAAAGTCGAAGACAATCAGAGCACTGGTTTAATTGTAGTTCTGAAAGGGAGCACGCGTTTTTGAACGGCCACGACCAGAAGAAAAA
s caePb3.Scfld02_0      1917058 110 +  4147112 -----------------------------------------------------------------------ACAAA-------------GTAAGCTCAGCAAACCAGTGTATCGGA-------------------------AGgatatttt--------------------------tggaaggaaaat----catagaaacc---------aaaacggaaatga-------------gtaactgaaattttgaa------------ttttt-------------cagagaaagaa
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I
e caeSp111.Scaffold630  5672408 152 + 20921866 I
e caeRem4.Crem_Contig0   618869 331 -  4500979 I

a score=0.000000
s ce10.chrX             3508407 45 + 17718866 CGTACGTTCCCGAAACAGGGATACTATTTCTTAGATTATCTAAAT
e caePb3.Scfld02_0      1917168 31 +  4147112 I
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I
e caeSp111.Scaffold630  5672408 152 + 20921866 I
e caeRem4.Crem_Contig0   618869 331 -  4500979 I

a score=-2257.000000
s ce10.chrX             3508452 464 + 17718866 AAAATAATATGATGGCATCATGGGGCATCAGTGACATGCACGGTGACAAAATTTGACTAGGTCGACGCAAAAGTTTTGAGAATTTTTTACATAGGCGCTCTGCCGTTTTTACAATATGTATGACCATCAATGTGCTTTGTAAATCGCGAATTTTGCTAAATTGACACCAAAATTTTAAAAATGTTGTTTTAATGCTGGTGTCATTTTTACGAACGTGTAAACTGCATTTCTCATCTATGTGGAACATCGAAACACGTTTGTATTTTATTTTGAAAAAAGAACGATCATTATTTCAGAAGAATGACGTAATGACTTTTCAAAACAATTTTGTTCAAGTTTCATCTTGCTAAAAATAATCTAACATGCATTCTTTTCACAATAACATTAAATAAATAATTCTGCGATTCAGATCAATGATACAACCCATATTTTGAAATAAAACTCACAAACTCAAAAAGTTCAAA
s caePb3.Scfld02_0      1917199 307 +  4147112 AAAATCGTTTTACGAGATGTTGA---ATCAGTGGTTTTCAT---------ATGTTTCAAGctcgattgaaaaa--------------taca----------------tttggaacatgaaagaccctaaatgttttttctgga--aaaaagttttc---atagaCTATAAGATGATcaaa-------tctga----------actttttcaga-----aaactgtatCCTCAAACTACGAAAACCAT---------------TTCTATTCTCAA---------ATTGTTCCTTGTGTAGAA--ATGTATAGAGTTCC-------------TCTAACTTTCATATGATTAATAATAAAGTTACCCATACCGTTTTT-----------------------------CTCAAGTt--------------taatctacagtaa---ccacaaattagaaaa---caaa
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I
e caeSp111.Scaffold630  5672408 152 + 20921866 I
e caeRem4.Crem_Contig0   618869 331 -  4500979 I

a score=291.000000
s ce10.chrX             3508916 25 + 17718866 AAAACAACCCACTTTTCTTGCTTGG---
s caeRem4.Crem_Contig0   619200 25 -  4500979 AACAGAACTTACCGTTTTCATCTGA---
i caeRem4.Crem_Contig0  I 331 C 0
s caePb3.Scfld02_0      1917506 26 +  4147112 -ata-aactcacttgTTTCAATTGCGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I
e caeSp111.Scaffold630  5672408 152 + 20921866 I

a score=-14936.000000
s ce10.chrX             3508941 254 + 17718866 ---GAGTACAAATTGAAAGCAGATGCATATGGGTGTGAAAGCATACCTGCAAA---ACCAAACAG------------TAAACGAAAA---------------------------------------------------------------------------------------------ATTACAGGTTTGTTCGAAAGGCAA---ACAATATAATAAGAACAAAATGACAGAAGCAATGCGATTCAGTTGTGTTTGATGAAT-----CGAGAAGTTTT---CAAAAATAAAAGAAACGAAATTACCCTTTTCTGTAAACATGTTATTTATAAAC--TCTATGC--ATTCTT---GTTTTCTTTCT----------------------------AACTAAGTTT--TTGAAT---------
s caeRem4.Crem_Contig0   619225 342 -  4500979 GATACATAAAGTTGGAAAGCAGATGCATATGGTAGAGAGAACATACCTGCAAACATaacaatcag-------ttttttttgctaaaa-taaAACGGAGAATGACAAATGGattgtacttttttttgtttatagaACATCTCAGCTATGCTAT-----------------------TGTTTATTATAA----AATAGAAAGGTGA-AGGCACTActataacaaaaaaacgac-----CGCTATGCATTGTTTGTATTCGATCAATGACTATAAAGAATCAT--GAAAATGT------------ACGATTTCTTTA-ATTGAAACGCT---CAAAAACCGTTTCTTC--TTtact---tctttgttttt-------------ttttgtagttttgacaTGCACCTTT--TCCGGTGTTTCAGA-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5672560 279 + 20921866 ---GAATATAATTGAAAAGCAGACGCATGTGGTGAAGAATACATACCTGCAAACATTTTAAATATCAAAAcatcttattttcaaaaa---------------------------------------------------------------------------------------------aaaacgg----aagaacAAAGTGAGACacattg--------------------------tattttttgtttgtggAACATCAGCTA-TGCAATTGTTTATTACAGAATGTAAAGGTGATGACACTACTATC----ACAAAAATCGA--------AC--GTTATTC--ATTGTTTGCATTTTATCaataagaaattcaaaagagtaCGGTTttaagaaacatttttgatcAAATATTCTTGAT
i caeSp111.Scaffold630  I 152 C 0
s caePb3.Scfld02_0      1917532 302 +  4147112 ---GAGTACAGTTGAAAAGCGGAAGCGTACGGTAGAGTGAACATTCCTGCAAATGTACAAAACGT-------TCTTATTGTCAAAAATGGACACAAAGAATGACAA--------------------------------------------ACGGAATGTTTTTATAGAACATCATTGTTTAATACAG----AATGAAAAGGTTGGCGACAGTACTATCAC-CAAAAACGAA-----CGTTATTCATTGTTTGTATTTGATCGGT---TGCAATGAGTTTTTAGGAGAAGT------------ACGATTCTT----AGAGAAATACA---CAAAgat--gtttttcaaactatt---aTTTTACTATT-----------------------------ATTATTACTTATTGTATGTTTTAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I
e cb4.chrX              8636511 2712 + 21540570 I

a score=77105.000000
s ce10.chrX             3509195 352 + 17718866 AGCGTGGGCGTCCAAAATTT-------------------CAT---GTTACGTTGTGTTGGAACTG---CAAAAC--GTATTAAAATTTTTGGAAGTAGTGCTAACTGAAAATGAAAAGGTCGTCTGGTCGGTCCGCCGGATTATTTGTGCAAGGATTT-------TAGGGATTTAAAAGAAA--------------------------ACATCTAGAA----ATGGACTTGAAAGCTTTCGAAAGTTCAGAACTCAACAAGATTAACGAAATCAGCTGTATGTCTACTTTTTCGAATTCTTAAAACAAATA---------ATTTTGCT--GTTTTGCACGTCTACACTTTGCTATTCTTATCCAAACACTAGACCGGTACAAT---GACACATCACAAGTACCGGAAAGTTGGGACAAATGACGGTAGAT
s cb4.chrX              8639223 337 + 21540570 AGTGGGGGTGTA----ATCT-------------------CAT----TGAGC---TGTGGGCACTG---CAAAAA-CggattaaaaatttccaaagcttG-------------TAAAAGGACA-CCGGTCTGTTCAA--------GTCTAAAAGGA----------TGGAGATCAAAAGAAGAGAGGGAGATAAAAGGATTTAGCATTCACATCCAGAACGATACACATTGAAAAGGTTTCTAAAGTTCAGAATCCAATGAGATTAGGAAAATCAGCTGCCCTTCTAT---------TTCGGAAAACAAACACAGCTCTTTTTTCCATTAGTTTCTGCACGTC------------------TTCAAACATCAGACCGGTACAATAAAGATTCAACTAAAGTTACGGAATGTTTCAACAAATGACGGTCGAT
i cb4.chrX              I 2712 C 0
s caeRem4.Crem_Contig0   619569 326 -  4500979 AGT--GGGCGTA----ATCT-------------------TACTCCATGAATCAATGTCTGGGCTG---CAACaa--ggatttgaatttttgaaaattt--------------caataggACGTCCGGCCTGTTCTG--------TTGTGCAGGGATTC-----TTTGGAGATCAAAAGAGGA----TTTATGAAAAGGT---------ACATCTAGAACAAGAgggataaaaatgtttttgaaagttcagaaTTCAATGAGATTAACAAAATCAGCTGTAGTTCAAT---------TCCTCAGCACTAACA-ATTtatttcttctagt--tttttgcACGTC------------------TTCAAACATGGGGCCGGTACAAT---GACACATGACAAGTACCGGAATGTTG-AACAAATGACGgtagat
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5672839 335 + 20921866 ----------CC----ATCTTTAAATTGAATTAAGACAGCAA----CTAATC--TGTTCggtttgaaactgaaatttcgcTGCAGACATCCAAAAGTTA---AAACGAAATTTGAAAGGGCATTTGGTCGGATCAA------ACATGTGCAAGGATTC-----TCCAGGAATCAAAAGAGGA----ATTAT----ATTA---------ACATCTAGAACggaat-----aaaatgttttcaaaagttttcaattcaatgagATTAACAAAATCAGCTGTACTcgtat---------ttctgaaaacaaaca-----attcgTTTTAGT--TTTCTGCACGTC------------------TCCAAACAGTGGACCGGTACAAT---GACACATCAAAAGTACCGG-ATGTTG-GACAAATGACAGTAggt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1917834 328 +  4147112 -----GGGTGTC----ATCC-------------------CAC----TTACTA--TTTCAGCGTTG---CAGAAGTTGCAACaaggatttggaaaatgtt---ctgaGAAAATTAAAAGGACACTTGGTCTGTTCA---------TTGTGCAGGGATTCATTCttttagaaatcaaaagaaga----attaGGAAAATCT---------ACATCTAGAACGGCaggga--aaaatgttttcaaaagttcacaatTCAATAAGATTAACAAAATCAGCTGTATTCttat---------ttcggaaaacaaata-----attcattttagt--tttttgcaCGTC------------------TTCAAACACTAGACCGGTACAAT---GACACATCACAAGTACCGGAATGTTC-AACAAGTGACAGTaggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  749816 2058 -   823664 I

a score=112619.000000
s ce10.chrX             3509547 143 + 17718866 TGAAATAAAAA---------ATGAGACGA----AGAAGAAGAAATAAGG-------------AGGAACGATTCATATTTGAACAAAGAAAATTGAACACTGCTA----------------GAGGAAATGGAAATTAGTCAGTGAGCGGAAACAAGGTTTT-ATAGTATT-CAATTATGTTTTACCTT
s cb4.chrX              8639560 156 + 21540570 TGAAAAAAGTA---------ACCTAACAA--GGAGAAAAAGGACAAGTGAAAAGAATAAAAGAGGAACGATTCATATTTGAACAAAGCAAATTGAACACTGTtg----------aaggaagaggaaaaagaaattagTCATTGAGCGGAAACAAAGTTTTAATAGTATT-TC--TA----TTAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   619895 141 -  4500979 tgaaaaaaaaa---------aaataagaa----aaaagaaaggcgAGTGA------------AGGAACGATTCATATTTGAACAAAGAGAATTGAACACTGCTG----------------GAGGAAATGGAAATTAGTCATTGAGCGGAAACAAGGTTTTAATAGTATT-CCATTA----TTACCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5673174 155 + 20921866 tggagaagaaaaaaccgaagaatgaagaaaaaagaaaagaagacgagtGA------------AGGAACGATTTATATTTGAACAAAGAGAATTGAACACTTTTg----------------aaggaaatggaaattagTCACTGAGCGGAAACAAAGTTTTAATAGTATTCCCATTA----TTACCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1918162 145 +  4147112 tgaagaaaaaa---------aatagaaagaaaaagaagaagggcgAGTGA------------AGGAACGATTCATATTTGAACAAAGAGAATTGAACACTACTG----------------AAGGAAATGGAAATTAGTCACTGAGCGGAAACAAGGTTTTAATAGTATT-CCATTA----TTAcctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  751874 156 -   823664 tgaaaaagaaa---------agaaaagaa-----aagaaaggaaaagaaa------------agaaacaattcATATTTGAACAAAGAGGATTGAACACTGTCAGAGAGGAGGCAAGGcgaagaaaatggaaattagTCATTGAGCGGAAACAAGGATTTAATAGTATT-CCATTA----TTACCTT
i caeJap4.Scaffold18194 I 2058 I 6881

a score=-6203.000000
s ce10.chrX             3509690 159 + 17718866 TT--------GGTGAGAAGAAA---TGTCGA--ATTT----AACAATTG----GCAACTATTTTTTC---ATTATAAACTC----------------------TG------ATCATGACCTAGTTGGCAGCCAATTTATATTGGATAACAGGATAACAAATTTCTAATCAAAATGTACATAAATTAACTTT--TTTCATGTTTCACTTGAAAT
s cb4.chrX              8639716 154 + 21540570 ------------TGGGGGGTGGACTTGTGAAC-GCTTTGTCAACACCTT-----TGAGTACTTCC-----AAAATGAGAC------AAAAGTTTTTTATGAATGAAAAAGGATCTTGACCT------TAAcc--------tc-------------agaaattttcaatcaaaatgcACATAAATTA--TGT-GTTGTTTCTTTCGCGTCAAAT
i cb4.chrX              C 0 I 2252
s caeRem4.Crem_Contig0   620036 153 -  4500979 -------A--GGTGAAAAGTAGGC-TGTGAAC-ATCT----AAGATTTtacaaatgaatg----------aaaaagaaatg--tagaaaag---tGGAGGAATGA------ATTTTGACCT------TAACC---TTGTGTT-------------ACTAATTTTTAATCAACATGcacataaattattttt-gttttatatttgatgaaaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5673329 155 + 20921866 CGGtgtga--aataagaa-aaggt-TGCGTACAAATT--TCAATccatt--------atgtttttttttcaatgagaaatg-atataatag------------aa------aatttgaCCT------CAACC------TGTC-------------agtaattttcaatcaacatgtacataaattatttttcgtttcaaatcCATCTTGAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1918307 163 +  4147112 tgaaaagaagaagaagaagaaggt-tgaAGAC-AATT--TTGATGTATT------GGatattttctcagaaaaaaaaaacgaatacaCAAC------------TC------AAGTTGACCT------CAACC--CGTATgtc-------------acaaatttcaaataaacatGCACATAAATTATCGTT-GTTTCTTTCTTGATTCGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  752030 6881 -   823664 I

a score=3576.000000
s ce10.chrX             3509849 8 + 17718866 CTGTCACC
s caeRem4.Crem_Contig0   620189 8 -  4500979 ctgacaTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5673484 8 + 20921866 CTGACATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1918470 8 +  4147112 CTGACATC
i caePb3.Scfld02_0      C 0 I 4308
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e cb4.chrX              8639870 2252 + 21540570 I

a score=-1016.000000
s ce10.chrX             3509857 13 + 17718866 -------GTTATGCGA---GATT
s caeRem4.Crem_Contig0   620197 13 -  4500979 --TCACTGTCA--------GATT
i caeRem4.Crem_Contig0  C 0 I 1669
s caeSp111.Scaffold630  5673492 23 + 20921866 TTtctcaatcatttcttttgatt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e cb4.chrX              8639870 2252 + 21540570 I

a score=710.000000
s ce10.chrX             3509870 123 + 17718866 GAACATGAGAAAACCTAACAAAGTTTGACTCT-----TTTGTTAAAAAGCACGGGCCTAACATTCAGACTGTCAAAAAAATTATTAATAAATGTGACATAGTGGTAGAAACAACAGGAAGAATGATGA
s caeSp111.Scaffold630  5673515 123 + 20921866 aaaaGTACTGAAGCATGACGAAAGTTGGGGTTGAAGGTTTGTTAATCAAGTCGGCTATTCACTTCAGAATAACACACAAAATAGAAATGTATTCAAAATAACACT-----CAAAGGGCAGAGCAATGA
i caeSp111.Scaffold630  C 0 I 1224
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e cb4.chrX              8639870 2252 + 21540570 I
e caeRem4.Crem_Contig0   620210 1669 -  4500979 I

a score=0.000000
s ce10.chrX             3509993 3780 + 17718866  
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e cb4.chrX              8639870 2252 + 21540570 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I
e caeRem4.Crem_Contig0   620210 1669 -  4500979 I

a score=6861.000000
s ce10.chrX             3513773 233 + 17718866 AAGTCCAAAGTTTAGAGAGGTCACTATTACTCACAACTCGAGTTTTCCTTACTCTTGAGTCTACGCCTAAAACGAATTTTCATGGTATTATTTGAGAAAAATCAAATATCCGTTGCGCTTCTTTTTTACTTTT----------CGCGAAGACACATCCAAATGCAATTTTTTTGCCTTTTTTTGTAAATTTCGTTTCTAGTACCTTTTCCAAAAA-TGTTGTCATTCTTTTTTTCTTTTTTATT
s cb4.chrX              8642122 229 + 21540570 AAGATCAAAGTTTTTTGAGGTCACTATTACTCACGTCTTTCATTTCACTTCCCC---AGTCG--GGTTAAAATTCAATTGTTCTCTATTATTCTCTTAAAATTGAATATCCTTTGCGcttcttttttacttttacttttttcacttttcggGACATCCAAATccaatttatcgac----------aaatccCATTTCTAGTACCTTTCCAAAAAAGTCTCGTcatgttgtttcttttttttctt
i cb4.chrX              I 2252 I 212
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I
e caeRem4.Crem_Contig0   620210 1669 -  4500979 I

a score=0.000000
s ce10.chrX             3514006 1721 + 17718866  
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  752030 6881 -   823664 I
e cb4.chrX              8642351  212 + 21540570 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I
e caeRem4.Crem_Contig0   620210 1669 -  4500979 I

a score=735.000000
s ce10.chrX             3515727 38 + 17718866 AAATTAACAACAAAAAAATTAATAACTAGTGTTCCCTT
s caeJap4.Scaffold18194  758911 33 -   823664 aaaatgaaaactaaaaaagaaaCA-----CGTTCTATT
i caeJap4.Scaffold18194 I 6881 C 0
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e cb4.chrX              8642351 212 + 21540570 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I
e caeRem4.Crem_Contig0   620210 1669 -  4500979 I

a score=273.000000
s ce10.chrX             3515765 1 + 17718866 T
s caeRem4.Crem_Contig0   621879 1 -  4500979 T
i caeRem4.Crem_Contig0  I 1669 I 7
s caeJap4.Scaffold18194  758944 1 -   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e cb4.chrX              8642351 212 + 21540570 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I

a score=0.000000
s ce10.chrX             3515766 11 + 17718866 TTCCCTCAACA
e caePb3.Scfld02_0      1918478 4308 +  4147112 I
e caeJap4.Scaffold18194  758945  0 -   823664 C
e cb4.chrX              8642351 212 + 21540570 I
e caeSp111.Scaffold630  5673638 1224 + 20921866 I
e caeRem4.Crem_Contig0   621880  7 -  4500979 I

a score=101716.000000
s ce10.chrX             3515777 200 + 17718866 CAATCTTTGAGCATTT--------CTC----GTCATGAAG--AAGATGCTCCATTTCGACACCG-----CGCACAT-----------------AAATTGAATGATATCATTGTCGTTACTATCAGAAATTGCATCTTTTCGGGGTG-TCGTCGACGCGGAAAATTGAATATTTTTGATTTA-GCAGGTGATCTG-----TTTTGCGCCGGTTTCTTC--------TCCGTCTTTTTTCATCCATCTTTT--TT
s cb4.chrX              8642563 206 + 21540570 CAATCTTTGAACATGTATTCCCGCCTC----AATAAAAGACGGCGATGCtcaa-ttcacaattt-----tctac-------------------AAATTGGATGATATCATTGTAGTGACTATCAGAAATTGGATCTCTTT-GGGCG-TCGTCGACGcggaaaattgaatatttttgattcataCAGGTTATCCGA----TTCTGCGCCAGttttttc-----ttcgccatcttttt-------tcttcttttt
i cb4.chrX              I 212 C 0
s caeRem4.Crem_Contig0   621887 212 -  4500979 CAATCTTTGAACATCCTTCACCATTTCtccaaatagaaaaaaaagatgctCCA-TTCTCCATTTCCAGGCCCACG------------------AAATTGGATGATATCATTGTAGTTACTATCAGAAATTGCATCTTCTC-GGGCG-TCGTCCACgcggaaaattgaatatttttgattcacCCAGGTGATCGAT----TTCTTTCCCAATTTCTT---------GCCtatccttc-------tttttttgtg
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5674862 207 + 20921866 CAAtctttgaacatttttt-tcgactc----ctcaaaaaa--gagatgctCCA-TTCAACA--A-----CATCTA------------------AAATTGGATGATATCA-TGTAGTTACTATCAAAAATTGCATCTTCTC--GGCG-TCGTCGACgcggaaaattgaatatttttgattcacCCAGGTGATCCAT----TTCTCCaccactttctctt---ttttcccgtcttatt--atccatttttttgtg
i caeSp111.Scaffold630  I 1224 C 0
s caePb3.Scfld02_0      1922786 196 +  4147112 CAATCTTTGAACACTT--------CCC----ACCAAAAA----AGATGCTTCA-TTCTCCATTT-----CATACC------------------AAATTGGATGATATCATTGTGGTTACTATCAGAAATTGCATCTTCTC-GGGCG-TCGTCGACGCgtaaaattgaatatttttgattcaccCAGGTGATCCATC---TTTTTCAACattcctcct---------ccatttttct--attcatcttttt-tg
i caePb3.Scfld02_0      I 4308 C 0
s caeJap4.Scaffold18194  758945 219 -   823664 --ATCTTTGGGCATTT--------CTT----G----------AACATGCTCAA-TTTCCCATTT-----TCCATTTCCTTTCCCGCACAAGGAAAATTGGATGATATCATTGTAGTTACTATCAAAAATTGCATCTTTTT-GGGTGAGCGTCGACGcggaaaattgaatatttttgaTTCGCGCAGGTGATCCGTTTGGTTGACTGCCATCtttttttGTATGTAGACATCTCTGC-GGCCCATCTTTTTT--
i caeJap4.Scaffold18194 C 0 I 24859

a score=-13632.000000
s ce10.chrX             3515977 132 + 17718866 TTGTGGCTG-----TTTGGCAATTTTGTGCATCCAATTTTGCACGATGGTTTGGTCATTGGAAATTTGTTTTTATT------TCGGTTTTCCACTTT---------CACTGTTTTTTTTTCGAGAGAATGAGTTCTATTTTCGAGGTTTTCA
s cb4.chrX              8642769 100 + 21540570 ttgtatcta--tttcttttttg--------------gtgctcaaaa--------------------cttttttagggCAAC-TTGAACAACTGTTTTGAAGGGTtaggttgtttttttttctaggg----------aT-----AGGTTTTCA
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   622099 110 -  4500979 ttgttgcTA--ACTTTTTTCGGATGGACGAAACCAAATGTGCAaga--------------------catttttctagtttt-ttcatCCACTCTTTC---------AGCCGCTTTTGTTACAAAAG----------ctgtttcaggttttca
i caeRem4.Crem_Contig0  C 0 I 1294
s caeSp111.Scaffold630  5675069 120 + 20921866 ttgtcgtcaaaacttttttccccCCGAAGAAACCAATTTTGCAGGAGGAaccattttct---attctttttttattgcaTG-TCCAGGTTCTGTTTTTTAG-----AGTTTATTCTGTGTTT---------------------AGAATTT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1922982 114 +  4147112 ttgttgccGACAACTTTTCTGGATAAACGAAACCAATTTTGCAAGAGgaaccatttctt---tttctgttt---ctgcaTTCTCTACTTTCCGGTTt---------agtttcctattttttt---------------------cgaatct--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=243.000000
s ce10.chrX             3516109 10 + 17718866 ATCCAAATCT
s cb4.chrX              8642878 10 + 21540570 ATCCTAATTT
i cb4.chrX              I 9 I 1810
s caeSp111.Scaffold630  5675189 10 + 20921866 AAATTACTCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1923096 10 +  4147112 gatcaagcct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=1335.000000
s ce10.chrX             3516119  9 + 17718866 --GAAATTTTT
s caeSp111.Scaffold630  5675199 11 + 20921866 AAGAAGTTTcc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1923106  9 +  4147112 --gaatttttt
i caePb3.Scfld02_0      C 0 I 1436
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8642888 1810 + 21540570 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=295.000000
s ce10.chrX             3516128 41 + 17718866 GGAACGCAAGCTTAAAACTGGTTTCAGAACCTAGTCGCAAT
s caeSp111.Scaffold630  5675210 31 + 20921866 aggaaa-------aaaacaagtttt---acCTAACCCCAAT
i caeSp111.Scaffold630  C 0 I 907
e caePb3.Scfld02_0      1923115 1436 +  4147112 I
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8642888 1810 + 21540570 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=0.000000
s ce10.chrX             3516169 1980 + 17718866  
e caePb3.Scfld02_0      1923115 1436 +  4147112 I
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8642888 1810 + 21540570 I
e caeSp111.Scaffold630  5675241  907 + 20921866 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=644.000000
s ce10.chrX             3518149 49 + 17718866 TACTTTTGTTTTACAAAGATCATTAAGCGTCAGACATTCTCAAAATATA
s caePb3.Scfld02_0      1924551 35 +  4147112 TGCATTTTTTCCACGAAGATCCTGAG--------------caaaacaga
i caePb3.Scfld02_0      I 1436 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8642888 1810 + 21540570 I
e caeSp111.Scaffold630  5675241 907 + 20921866 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=-554.000000
s ce10.chrX             3518198 19 + 17718866 -----TTCATGCCTGAATCTTCAG
s cb4.chrX              8644698 11 + 21540570 -----TTCACGTCTGA--------
i cb4.chrX              I 1810 C 0
s caePb3.Scfld02_0      1924586 16 +  4147112 tttttgtttcatctgg--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5675241 907 + 20921866 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=675.000000
s ce10.chrX             3518217 24 + 17718866 TCAT---ATGTTGCCTT-------TTTTCTTTTA--
s cb4.chrX              8644709 33 + 21540570 TCAT---ATGTTGTAAGCCCTGCCGTTTCATGTACA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5676148 24 + 20921866 TCAT---ATGTTGCTAA-------ACATCTTGTA--
i caeSp111.Scaffold630  I 907 C 0
s caePb3.Scfld02_0      1924602 25 +  4147112 TCATTGAATGTTGTT---------TCATCTTTCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeRem4.Crem_Contig0   622209 1294 -  4500979 I

a score=105885.000000
s ce10.chrX             3518241 290 + 17718866 CACAACA-AACTTGTCGCCCATAATTTAGTGGGACTAATTATTTCTAAAATACTCAACG-------CCTCCG--TGTCGTTAATCTCCTCTCTGTCTCC-----ACA-----CGAGCAGTGTCCGCCGAGAAAATTCATGCATATAGAT------ACAACAAAAAAAAAGACTCATCTGTCGGTTGCATACCAAATAGGGCCAAAACTCAGCAG----CCCTTTGC-GCGCGGGGGTC------------------CTAC-AACATCGTGTTATTCATCTATTTATTAACGCGTCGGTTCACTTCTTC--GGACATCCCTGACTTACACACACGTCCTTCGA-
s cb4.chrX              8644742 338 + 21540570 CACAACA-GACTTGTTACAAATAATTTAGTGGAACTAATtactctgaaaatccaatgCCATCCAGtcttccttcccttcttctctttttctctctcttcctcgtcttccttATTAGTAATGTCCACTCAAAACATTTATGCATGTagataaaaacaaagaaaaaaaaaagactcatATGTCCGTTGCATACCAAATAGGgcgaaaactcagaaaaagcCCCTTTTC-GAGAAGGGACCACGCGGTGTTACTGGCGACGAC-GACATCGTGTTATTCATCCATTTATTAACGCGCCGGTTCACTTCTTCGGGGACATCCTTGTCATCAGAA-ACCTCCCTCGG-
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   623503 273 -  4500979 CACGACACGATTTGTTACTCTTAATCTAGTGGGACTAATTACAGAGAGAATC--------------CTTCCT--CACtgttgtcttcttctcctttttc-----ctttcttattGGCATTACACACTCAAAACATTTAtgcat-------------aaaaataaaaaaaggcTCATCTGTCTGTTGCATACCAAATAGGGCTAAAACTCAGCAG----TCCTTTTC-TCTC--GGACCACGCGG------------CCGC-AACATCGTGTTATTCATCTATTTATTAACGCATCGGTTCATTTCTTC--GGACATCCTTGTCATTCAA--------------
i caeRem4.Crem_Contig0  I 1294 C 0
s caeSp111.Scaffold630  5676172 280 + 20921866 CA-AACA-TCCGCTTCTCCCATAATCTAGCGGGACTAATTACTCAAGAAATCCC------------ATTTTC--ATCTGCTATCTCCG--TTATTCTGC-----ATCTCTT-TCAGCCGTTTCCACTCAAAACATCCATGCATatagat------------taaaaaaagactCATCTGTCGGTTGCATACAAAATAGGGCCAAAACTCAGCAG----CCCTTTTC-GCTC--GGACCACGCGG------------CGACGGGCATCGTGTTATTCATCTATTTATTAACGCGTCGGTTCACTTCTTC--GGACATTCTCCCCCTTG------TCCCCTTGGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1924627 278 +  4147112 CACAACA-AACATGTTATCCATAATCTAGTGGGGCTAATTACTTGAGAAATCCCATAT--------ATTTTT--CTCTggtctcttcgtttttttccac-----atATCCT-TTAGCAATGTCCATTCAAAACATCCATGCATATAGAT--------------AAAAAAGACTCATCTGTCGGTTGCATACAAAATAGGGCCAAAACTCAGCAG----CCCTTTTCTACTC--GGACCACGC-------------------GGCATCGTGTTATTCATCTATTTATTAACGCGTCGGTTCATTTCTTC--GGACATCCTTGTCATT-------CCCCTTTGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=727.000000
s ce10.chrX             3518531 21 + 17718866 TTGCTCT---TTATTCTCTAGACA-----
s caeRem4.Crem_Contig0   623776 24 -  4500979 TTCCTTTGGGACCTGCTCTAGACA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5676452 19 + 20921866 ----------ACATGTTTTAGCCGTTAGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1924905 19 +  4147112 ----------ACATGCTCTAGACACTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8645080 22 + 21540570 I

a score=116500.000000
s ce10.chrX             3518552 625 + 17718866  
s cb4.chrX              8645102 583 + 21540570  
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   623800 508 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5676471 539 + 20921866  
i caeSp111.Scaffold630  C 0 I 31
s caePb3.Scfld02_0      1924924 533 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=-1115.000000
s ce10.chrX             3519177 10 + 17718866 ---------------------CGTCTCATGC
s cb4.chrX              8645685 10 + 21540570 ---------------------agtttctcgt
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   624308 10 -  4500979 ---------------------AGTTTTCAAA
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      1925457 31 +  4147112 agttttttcttttggatctTGAGTTCCTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677010 31 + 20921866 I

a score=13854.000000
s ce10.chrX             3519187 135 + 17718866 ------ATTCTAGTACATACATCAACTGCGTCATCATTTTCTCAACTTCCTGAATCATTAATGTGT-AAAGTGTTTGAACT---GAAAAAATTAA---TTTGTAGACTGTGGGTATTCTTCTCTTTTTTTACTCAAGTTTCTTAGGAG----------------
s cb4.chrX              8645712 136 + 21540570 TTTCAAGTTCGAGTACAT-------TTACGTCATCA---TCTCAACTTCCTGAATGTTTAATTTGCAAAAGTACCCTCCTCACTAGAATTACTTACATCTTCTAGACGG-------TTCATTATGATTCTACATCATACTTT-----------TCTCATCTAGG
i cb4.chrX              I 17 I 28
s caeRem4.Crem_Contig0   624322 138 -  4500979 GTTCTACTTCAAGTACTT-------TTACGTCATCT---ACACGACTTCCCGAATTTTTAGTT---GCAAGTACTCTTTTA---TGAATAATTTA---TTCGTAGACAG-------TTTATTATAAGTCCGCATCAATTTCTAAGTCTCGACATTTCTTCAAAG
i caeRem4.Crem_Contig0  I 4 I 6
s caeSp111.Scaffold630  5677041  78 + 20921866 ------GTTCAAGTATAT-------CTACGTCACCA---TCTTAACTTCCTGAATTCTTAATTTGT-GAAGTAACCTCTCT---TGCATTAATTA---TTC---------------------------------------------------------------
i caeSp111.Scaffold630  I 31 C 0
s caePb3.Scfld02_0      1925488 111 +  4147112 ------GTTCAAGTACAT-------CTACGTCATCA---TCTAAACTTCCTGAATTCATAATTTGCAAAAGTACCTTCACT---TGAATTACTTA---TTCCTGGATGG-------TTTATTATATGTCTgcatcatttt------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=-4523.000000
s ce10.chrX             3519322 28 + 17718866 TTCCAAAAATTTGTCGTGAGTAGCTTGT---------------
s caeRem4.Crem_Contig0   624466 31 -  4500979 -TTCCTACCAGTTTGGTAATGTAGTTGACAGT-----------
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0      1925599 38 +  4147112 -----ttcccttctctcattgaactcttttttgcGCAACTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e cb4.chrX              8645848 28 + 21540570 I
e caeSp111.Scaffold630  5677119  0 + 20921866 C

a score=-48530.000000
s ce10.chrX             3519350 176 + 17718866 TTTGGAAA-TAAGTGAATGCATA--------------TATAATCTTTTCTTTCCTCTATT--CCGCTAAAATTTA----GTCAAACATACAAGGGTTGAAGGTA-------GACATATATA-------CTATTTCCGATTTCAGAA-----AATGC-------TTCGAA--------------TTCAATTAGAATCATGTTAGTACGTATTTTAATGTAAATTTTCCAATGTTTTTG----
s cb4.chrX              8645876 214 + 21540570 TTCGTATATCAAAGAACTCATTC--------------ACTACTTTTCtgtgtttcatttttctggatAAATTCTATTGGTTCACGCGGAAAAATGTTGATGGTGAGTGACTAACATGCGGAAACTAGACTAAATTCAGTTTCGGAAAATCGACTGTTCAGTTACTTGAGTCTCAAAAACA---AGAATCTGCAACTCAGTTGTGTcgaaaaaaactgggaatC------CGTTTTAG----
i cb4.chrX              I 28 I 47
s caeRem4.Crem_Contig0   624497 162 -  4500979 TCTGTAAAAGAAACACCCAATTTAAGTAACCACATGGAACATTTTCCTGCTTTCCATTCT--CAGATATCGCTTGTAAAGTCAAGCGT----GTGTTAGTGGATTGTGGTTAACATGCGGAAACTAAATTCAATTTCGTTTACTCAAACTCACTGTTCAGT---------------------------------------------------------------------ATTTTCG----
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold630  5677119 127 + 20921866 ------------GTCAATCGTTC--------------ATTAAATGTCTGCATCTTCTCCT-------------------TTCA---------TAACTG-------------AACA-ACTTCAATT---TAAAGCTTGATTTCACAAGCTCCAATGT-------TTGAAT--------------Ggaaactaaaatttcaacagtttga----------------------attcaaaagtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1925637 144 +  4147112 ----CTAACTAAATCCATAGATC--------------CTAAAATGTGTCCATCTCTC-----------------------------------GAATTG-------------AACATACTGAAGTC---TTCATATTGCTTGAAAAGACAAAAGTGT---GTTAGTGGATTGTGGGTAACATGCGGAAACTGAACTAAATTCAGTTTG-------------------------TTCcaattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=-11593.000000
s ce10.chrX             3519526 50 + 17718866 GAGTACTATCTTTAGGTCAAACCCCAAGTTTGAGCATAT-----------AAGTTTTGATC-----------------------------
s cb4.chrX              8646137 79 + 21540570 CAACACTTAATTTTTG--GGAGTTGAAGCTCGAGCTGATTGAAATGCATCAAAATTCTCTCtgc---------gaaatatttttttcagc
i cb4.chrX              I 47 C 0
s caeSp111.Scaffold630  5677246 29 + 20921866 --------------------------------------------------aACATTGTCTATAACTAACTCTCGATGTA-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1925781 20 +  4147112 --------------------------------------------------agtattttttctag---------aataca-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeRem4.Crem_Contig0   624659 36 -  4500979 I

a score=-23339.000000
s ce10.chrX             3519576 64 + 17718866 ---------TAAAAATGTGAATTTAAAATG-------TAGTAGCGCTAAAAA-CAATTGCTATGGCGTTAAAAAACTGAAT-----
s cb4.chrX              8646216 79 + 21540570 cagaGATGTTCGAAATG-gcttttgcagaattttttgaagtgtcGTTAACTT-CTAGTAATATtccgtttttaaa--aattct---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   624695 59 -  4500979 ------------CAATT-GTGTTTACATAA-------AATTAGCGTTA---C-AGAGTATTCCCCCATTAATAAACTGATCAT---
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  5677275 66 + 20921866 --TAGACGCTTGAAAAG-------ACAAAA-------GTGTGTTAGTGGATTGAATGTAACATGGCG----CGAACTAAACTGAAT
i caeSp111.Scaffold630  C 0 I 134
s caePb3.Scfld02_0      1925801 46 +  4147112 --TCGAAAACAGAA----------ACTAGA-------ATGTGTTGACAATTT-------------------TGAGAGACTCTCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=-214.000000
s ce10.chrX             3519640 14 + 17718866 ---ATCATAATAAAATA
s cb4.chrX              8646295 14 + 21540570 ggaattt---cgaaata
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   624754 17 -  4500979 GTCATATTCATGAAACA
i caeRem4.Crem_Contig0  C 0 I 89
s caePb3.Scfld02_0      1925847 12 +  4147112 -----ATTAATAAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677341 134 + 20921866 I

a score=114.000000
s ce10.chrX             3519654 15 + 17718866 TTCC---AAAAAATTTTG
s cb4.chrX              8646314 15 + 21540570 attt---tcaaaactctg
i cb4.chrX              I 5 C 0
s caePb3.Scfld02_0      1925859 17 +  4147112 -TCCGAGTCAGAATCATG
i caePb3.Scfld02_0      C 0 I 57
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677341 134 + 20921866 I
e caeRem4.Crem_Contig0   624771 89 -  4500979 I

a score=-697.000000
s ce10.chrX             3519669 87 + 17718866 CATTTTTTTTTTC---ATTTTGAGTAAAAAAGAGGTGTGCGCCAATTTCTAgaaaactaaagca------------ctgtcgcatactc-------aacccctacaata---
s cb4.chrX              8646329 98 + 21540570 gGATTTTCATCACAAAACCTTGACTAA--------------CAGATTTCGAGAACGCCAAAATATGAGCCCTGATTCCGTTCCATACCCAGGAGGAAACTTCTTGAATGAGT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1925876 57 +  4147112 I
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677341 134 + 20921866 I
e caeRem4.Crem_Contig0   624771 89 -  4500979 I

a score=-518.000000
s ce10.chrX             3519756 1 + 17718866 ------t
s cb4.chrX              8646427 2 + 21540570 -----ct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   624860 7 -  4500979 CTGAATT
i caeRem4.Crem_Contig0  I 89 C 0
e caePb3.Scfld02_0      1925876 57 +  4147112 I
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677341 134 + 20921866 I

a score=-2005.000000
s ce10.chrX             3519757 25 + 17718866 ttaaacatgaatattttaaacacaa
s cb4.chrX              8646429 25 + 21540570 ttgacataccgtagtttacaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   624867 25 -  4500979 CTAAGAGTGCGGATGATATTAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1925933 20 +  4147112 -tcaaaaatcaggattCACAA----
i caePb3.Scfld02_0      I 57 I 15
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677341 134 + 20921866 I

a score=-78789.000000
s ce10.chrX             3519782 221 + 17718866 ttaaaata----------taaaactgaaagaaaacgcttt-----------------tttCCGA-----T---------------------TTGTTTTGAATAA--AAATAGATAA--------------------AAAATACTCCAGATTTTTTTGAAAAAATTTA----------------------------------------------------------------------------------------------------------------------TTATGATATTACAT---CATTTTAAACTATCCTGATTGGAT-TC----------------------------------------------CTTCTTGAAATTTTAAAAGTCGTAGAATA---AAATGTTCTTTGATGTCCTTTTGTATTTGCCATGTTCA--------------------------------TCTTTTCAATCTTAGTGTATCT--------
s cb4.chrX              8646454 463 + 21540570 ------tt-------------taattccaaaaaaagatttgaaaatttctgtagcaattttcgaaatggtGAATTCCGTTCCGCACATCCATGACATCTG--CG--AAACAGATAGCTTTCACCTTGACTCTTGAGAAAGTGataatgataatttttaaaaacctttccctcaactacagtaatccctgaaaaattttctctacttttctGGGCTTCCTACACCTCTTCGCATAGAATCTGACATTGCCGAATGacagcaaaatttcaaatttactaTTCAAGATTTCTGATTCAGGATCTATAACTTCCGAAATCTCTAT--GAC-TGCAGCGAAacgaagtttttaaaaattcgcaACTTCCAAGAATTGTTCTTCGATGCTATT------GGTGTTTGATTGGtggattttttctcattttctatc----ttgcactttttccaatttctagctttttgagatagttgtagttttttttctgaaattgactTTTCG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   624892 135 -  4500979 ------TT----------CACTACTTCCAGGAAAAAATGT-----------------TCTTCGATGTTGT---------------------TGGTGTTTGA-TG--GAATAGATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGATTCTACATATGTACTTTCTACTCTCCCGAT--ATC-TG-------------------------------------------------AACGCAATT------GTATTTTGACT-------------------------------------------------------------------------------TGGAATTGACTTTT-G--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5677475 176 + 20921866 -TGAAAGT----------CTGGAAATGCAATAAGAACTAT-----------------------------T---------------------Tggtttgaaattga-gaaaccAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGAGTTTTTTCCCGAAAT-------------------GAT--GAT-TG----------------------------------------------TTCATCGACATT------GATGTTTGATT---GAGGAATGTATAATGATCTGTC----TTACTCTCTTTG-------------------------ATCTTGTACTTTTCGATATCCAAATTCAGTTgtatct
i caeSp111.Scaffold630  I 134 I 24
s caePb3.Scfld02_0      1925968 173 +  4147112 -taaaaattcACATCTTCCGggaaatatggaaaatatTGT-----------------TCTCCGA---TGT---------------------TGGTGTTTGATTGGTGAATGTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATCTTTTTTACTCTTTGT-------------------GAT--CTTGta----------------------------------------------ctttccgaaatt------tccg---------------aCATCCGAAGATCTGCCG--GTTGTATTCCTTG------------------------------------TCTGAAATTGACTTTTAAATGTA---
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=-2935.000000
s ce10.chrX             3520003 29 + 17718866 AATGTGAAGCAGAACCCGTAGCTTTCCAC
s cb4.chrX              8646917 18 + 21540570 AATGT-----AGTACTAGTATCT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   625027 12 -  4500979 AATG-----------TAGTATTT------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1926141 11 +  4147112 -----------------GTATTTGTCCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I
e caeSp111.Scaffold630  5677651 24 + 20921866 I

a score=107094.000000
s ce10.chrX             3520032 450 + 17718866  
s cb4.chrX              8646935 505 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   625039 415 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5677675 422 + 20921866  
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      1926152 423 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  759164 24859 -   823664 I

a score=27284.000000
s ce10.chrX             3520482 45 + 17718866 ATGAATGCTTCAGAATCGTTCCTAGAATCATTAAATCTTCAGGT--A
s cb4.chrX              8647440 45 + 21540570 ATGAACGTCACTGACAGCTTTCTGGAATCGTTGAATCTGCAGGT--A
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig0   625454 45 -  4500979 TTGGACGTCACCGATGGTTTTCTGGATTCTCTGAGTTTGCCGGT--A
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  5678097 45 + 20921866 ATGAACGTCACGCCAGAATTTCTAGACTCTTTGAACCTGAAGGT--A
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_0      1926575 47 +  4147112 ATTAACGTCACTGAAGGTTTTCTAGAATCGCTGAATTTGCAGTTAAA
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194   41240 45 +   823664 ATGAACGTTTCCGACCGTTTTCTAGAATCTCTAAATCTGCAGGT--G
i caeJap4.Scaffold18194 n 24859 C 0

a score=-16419.000000
s ce10.chrX             3520527 54 + 17718866 AGCGT---------------------TTAC----TTCAAATC----------TCAGGCCTTGCTGCTATCCCGAATCA----------------AAATTTTATTC------
s caeRem4.Crem_Contig0   625508 94 -  4500979 aacttcagaattcccACGGAATCGTGTCACTTGTTTTTATTCATCTACGTCTTCTTGACTTA--------TTGAGCAG---TGAGAGTGAGGCTACATCTGACAC------
i caeRem4.Crem_Contig0  I 9 I 2
s caeSp111.Scaffold630  5678168 69 + 20921866 AGAAA--------------------GTAAC----TTTAATACA---------TCTTGACTTGCAAGAG--TCGAGCAGCGCCGAGAGCGA-GCAACATCTGACAC------
i caeSp111.Scaffold630  I 26 I 2
s caePb3.Scfld02_0      1926636 65 +  4147112 AGTAACA---------------Cttgtcat----ttttattca---------tcttGACTTGCTAGTGCATTGAGTTGCTCC------------ACATCTGACAC------
i caePb3.Scfld02_0      I 14 I 2
s caeJap4.Scaffold18194   41285 48 +   823664 ---------------------AGTCGtatc----tttatttta---------ttt---cttgTT------GCAAGATG--------------------TTGACACGCACTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8647485 79 + 21540570 I

a score=44398.000000
s ce10.chrX             3520581 75 + 17718866 CATTAGAAAATCTGATTACAAGTCGACTCAACTACTTATAATATTGTTTGAACTT-GA------------GAAAAGATAC-------CA-----------ACTGTC
s cb4.chrX              8647564 87 + 21540570 CATTAGTAAATCTGATTAGGAGTCAAGTCAACTAGTTGTAATATTCTTTGAACTAAGA------------AAGAAACCAT-------GATCTTCTCCTGCAATATC
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig0   625604 76 -  4500979 CATTAGTAAATGTGATTATGAGTCGAGTCAACTACTTATAATATTCTttgaactgaaa------------gaaaaattgc-------cA-----------ACTGTC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5678239 76 + 20921866 CATTAACAAATAAGATTATGAGTCGAGTCAACTACTTATAATATtctttgaactgaaa------------aaaaagttgc-------ca-----------ACTGTC
i caeSp111.Scaffold630  I 2 I 34
s caePb3.Scfld02_0      1926703 73 +  4147112 CATTAGTAAATCAGATTATGAGTCGAGTCAACTACTTATAATAttctttgaactg---------------aaaaagttgC-------CA-----------AGTGTC
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   41333 91 +   823664 CATTAGC-TACCTGGAAAAGAGT---ATCACATATTTAGCATAATCTTTGGACTAAAACACGCTGAGGTTGAATAAGTGCATGGTAACA-----------ACCGTC
i caeJap4.Scaffold18194 C 0 C 0

a score=-6587.000000
s ce10.chrX             3520656 21 + 17718866 -------------------------------CTCCCCGCACTAAACTTGATT
s cb4.chrX              8647651 20 + 21540570 --------------------------------TTCTCCTGCTAACCATGATC
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   625680 17 -  4500979 --------------------------------TCCCTCTACTAG-TATGA--
i caeRem4.Crem_Contig0  C 0 I 11
s caePb3.Scfld02_0      1926776 18 +  4147112 --------------------------------TCTATATACTCA--ATGTTC
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18194   41424 52 +   823664 CCGTAAAACTCAATTTATCcttctctctcgttttcttctcttctcttcgATT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5678315 34 + 20921866 I

a score=114597.000000
s ce10.chrX             3520677 426 + 17718866  
s cb4.chrX              8647686 439 + 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   625708 407 -  4500979  
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  5678349 385 + 20921866  
i caeSp111.Scaffold630  I 34 C 0
s caePb3.Scfld02_0      1926811 402 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194   41476 451 +   823664  
i caeJap4.Scaffold18194 C 0 I 1171

a score=886.000000
s ce10.chrX             3521103 5 + 17718866 GTTTT-
s cb4.chrX              8648125 5 + 21540570 gtttt-
i cb4.chrX              C 0 I 1696
s caeRem4.Crem_Contig0   626115 6 -  4500979 tttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5678734 5 + 20921866 TCTTT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1927213 5 +  4147112 TCTTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I

a score=-1560.000000
s ce10.chrX             3521108 366 + 17718866  
s caeRem4.Crem_Contig0   626121 469 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold630  5678739 465 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1927218 485 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-519.000000
s ce10.chrX             3521474 31 + 17718866 GTCATAA----TCATAAAAAAATCTGTCCCAAGCA
s caeSp111.Scaffold630  5679204 30 + 20921866 GCTGGAGCATTCTATT-----ATTTGTCCTAATGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1927703 35 +  4147112 TCCCTcacattcattctgaaaattcgttcTAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeRem4.Crem_Contig0   626590 20 -  4500979 I

a score=1705.000000
s ce10.chrX             3521505 83 + 17718866 CGTTCAAG------TTATGAATGATACTGATGGC-----TTTGGTAGAAT--------CTTGGTGAGTCCTTCAACTTGATAGACTTTGCAAAATATGAAAA
s caeRem4.Crem_Contig0   626610 50 -  4500979 TGTTCAAATAATGATACTAAATGATACGGATGACCAGACCGTGGTAAGTT----------------------------------------------------
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold630  5679234 84 + 20921866 --------------TTCTGAATGATACTGATGAACATAACTTGGTAAGCTTTGTACTTTTTGTTGACTCCCTCAATTGCGTTGAAATCCta----acaaaaa
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      1927738 84 +  4147112 --------------TGCTAAATGATACAGATGACCAAGGCTTGGTAAGTTTTGTACTTCTTATTGTCATACTTATCGCCGCCAGAATCCCA----ATGAGAA
i caePb3.Scfld02_0      C 0 I 83
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-4684.000000
s ce10.chrX             3521588 47 + 17718866 ATAACTGTGCATGTAGATCTTCTTTGGAGTGTGTAATCAGCTTTTAA-
s caeRem4.Crem_Contig0   626660 25 -  4500979 ----CTGTACTTGTTGTTGTCACTTCTAA-------------------
i caeRem4.Crem_Contig0  C 0 I 87
s caeSp111.Scaffold630  5679325 36 + 20921866 ------acgaGCATTGATatgatggaaga-gaagaacaag-----aaa
i caeSp111.Scaffold630  I 7 C 0
e caePb3.Scfld02_0      1927822 83 +  4147112 I
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-429.000000
s ce10.chrX             3521635 56 + 17718866 AATGATTTGCTCGCCGA-ACATCTGCTATTTCACCCGAAA----TCATTATATCAGTTCAA
s caeSp111.Scaffold630  5679361 56 + 20921866 aagttttcactCGCCGAGATAACCCCAA--TAACTCAAAACGTGTCTTGCTGGCAATT---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1927822 83 +  4147112 I
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeRem4.Crem_Contig0   626685 87 -  4500979 I

a score=3339.000000
s ce10.chrX             3521691 40 + 17718866 TCAATGAGCAGAGCATATCCTCAGGGCACCTGTTCAACTA
s caeSp111.Scaffold630  5679417 34 + 20921866 TCGATCAGCAGAG-ATATCTTCCG-----TTTCTCGAATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1927905 34 +  4147112 TCAATCAGCAGAT-ATATCTTctg-----tttctcagttt
i caePb3.Scfld02_0      I 83 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeRem4.Crem_Contig0   626685 87 -  4500979 I

a score=-2339.000000
s ce10.chrX             3521731 19 + 17718866 CC-------AATAACTTTTGAACGAC
s caeRem4.Crem_Contig0   626772 26 -  4500979 CCAATAACTCAAGTGTTGACACTGAC
i caeRem4.Crem_Contig0  I 87 C 0
s caeSp111.Scaffold630  5679451 14 + 20921866 ---------CATAGCGTTTCTTC---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1927939 17 +  4147112 ---------cataGGTTTTCTTCCAC
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-1489.000000
s ce10.chrX             3521750 17 + 17718866 AATTATGAACTGAGAAG-----
s caeRem4.Crem_Contig0   626798 15 -  4500979 -------ATTTCTGATTGACCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5679465 14 + 20921866 AAGT---AACTCAGAAC-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1927956 25 +  4147112 I
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-51837.000000
s ce10.chrX             3521767 340 + 17718866 AAATGTTTTTCAAACAACTTCTGAACTTTTTGTTTTAGAGAAAACTATCCAATTTTTAGCCTGATAACCAGCGTAAAAA--TTATTC--TTAACCAAAAATT---TTT---TCCACTCATAGTTGTGCTTGCCCTAATTAATATATTGAA---TCACTTGTT-----TACACAACGCA---------TTAATATTT--GAAAATCTCA--------------------------AGTTACGTTCG-------------AAGAACGGCATTTC-------TTCGAACG-TATCCGGACTATAACC-----CTATATCCAACTAATTATATCCGACATTATATAAGCCGGATTCAAATGTATAGCCAGAAAGTGTGATCTCTTGTAACTGTGAAACTCGGTTTTATTTTC-------ATTTCCTGTGT-----TT-------------
s caeRem4.Crem_Contig0   626813 265 -  4500979 AAATAT-CTTCAGTTG------------CTTGTTTTGT--GAGAGT-cccatttttttagttttagaaCAC----------CTGCTCAAGTaccaaaaacttttgttt---ttgactggAAGCTATTCAAACTTTGA--TACACTTTTCTTGCACTCCCGTT-------------------------GTAATTTCTCCTTAAATTAAG--------------------------TTAGAAGTCTG-------------AAAAACT--------------TTAGCGAG-CATCCAG----------------------------TTATTCTGGAacttgtg------------aaaaaaacaacgaaaa-----------ttgGAGTAGTCAAATCTAGATGCCTTTTTATTAC--GATCACTGTAC-----CT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5679479 381 + 20921866 ACCTGTTCTTCActtgatctct----tttttagtttattGGAAA----CCAATTATTGAACTGATAGTCAA------GATTTTGTCACATCTCTCATAGTTTATATTT--ATTGATTCGTGTTCCATTCGGTCCTAC--AACGTAACAAT---AGCTTCAATGTGAAGAAACGGAGAAGATTCCACAGTATTACCG--TGAAAACATGgtgttttttgtaaaaatgtTAATTTATGATCAGTCTGATTATATGGCTCTTTGGACCATACTTTGAACATATTTATG---CCGACAGTCCCTAATTGAATACGATATC-------TAATACATGACCCTC---------------AAAATGTTGT----------------TCTGAATAATACAATGCATTCGCCTCATGAtagatgattttttggaaaacttcTTTTCCTAT-GATT
i caeSp111.Scaffold630  C 0 I 156
s caePb3.Scfld02_0      1927981 296 +  4147112 ACATCTATTTCatcag---tat----tttttgtttcgt--aaaa----taggtttttgaatgggaaaacAT------AA--TTGTTA----------AAATGAGGTTTGAATTGATTAgaatgaaat----ttctga--aagacAAGAA----AACCTCATT-----CAAATGGAG-----------GTAGTTGCT--AAAAACCATGG-------------------------TGATCGATCTG------------TAAGgactctaatttt------ttgatgagttctgcagttcaaaattactttctttttct-accgGTAATCCCTATTctttat------------aaaaaagtttc----------------tc---------caACAGGTCTGGCTCATAAT-----ATTCACTGTAA-----CTTTTCAAATCGGTT
i caePb3.Scfld02_0      I 25 I 4
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-5392.000000
s ce10.chrX             3522107 121 + 17718866 GCAATTTTATAGCTTACAAATCTGCGTCGTGCATT--GGAAATTATTGGTTTTTAGAGGAAAAGAGAGTGACTGTGTT---GGGTATTTTAAACGTATAAACCTTATTTTAAAT----TAACAAATTTCG
s caeRem4.Crem_Contig0   627078  99 -  4500979 ---TCTCAAAAACCTTCAGACctgattttctaattttattaATCTTTTGTCTTCAcataatat-------------tt------tgttttata---------CTAACTGAGAATACCGAGCCAGTATACG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1928281  94 +  4147112 --------AAGACTTTGTAAGTTGA------------AATAAACTTCGAAATACAAGGAATataagaaaaagttcattaaAGGATGTTCT------------CCAACTTTAAGT----AGCCAAAGACcg
i caePb3.Scfld02_0      I 4 I 4
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeSp111.Scaffold630  5679860 156 + 20921866 I

a score=-2892.000000
s ce10.chrX             3522228 33 + 17718866 TTTTCAAAAAAAATCTCAACA------ATTTTTCATGGC------
s caeRem4.Crem_Contig0   627177 39 -  4500979 ATTTCGAAA------TGGATGCctaaaatttcatattttcatgaT
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold630  5680016 29 + 20921866 ttttcgaaaa----ctgaatA------GTCTTCTACTTT------
i caeSp111.Scaffold630  I 156 C 0
s caePb3.Scfld02_0      1928379 29 +  4147112 tttctgaaaa----acaaacg------gTTCTGGAAGTA------
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I

a score=-2301.000000
s ce10.chrX             3522261 49 + 17718866 GATTTAAAAA------AAACCCAGC-AATGTTATTCTTCCTTTCGCAAAAATTTTT
s caeSp111.Scaffold630  5680045 47 + 20921866 TTATTAACTG------AAACTCTGtgaatgtt---tttgttttcacagGAAGTCTT
i caeSp111.Scaffold630  C 0 I 68
s caePb3.Scfld02_0      1928408 52 +  4147112 ATTCCAAATGCATTGAGAACCTTATTAATTGTA-CGTTGTTTTCTTACGTTGT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeRem4.Crem_Contig0   627216 61 -  4500979 I

a score=-1277.000000
s ce10.chrX             3522310 44 + 17718866 CAAGCATAAAAAAAAGAAAAAATTATGCCAAAATCCTCGGTTAG
s caePb3.Scfld02_0      1928460 10 +  4147112 TGGTCATCAA----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e cb4.chrX              8648130 1696 + 21540570 I
e caeSp111.Scaffold630  5680092 68 + 20921866 I
e caeRem4.Crem_Contig0   627216 61 -  4500979 I

a score=45.000000
s ce10.chrX             3522354 3 + 17718866 GTT
s cb4.chrX              8649826 3 + 21540570 GTA
i cb4.chrX              I 1696 C 0
s caePb3.Scfld02_0      1928470 2 +  4147112 -TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e caeSp111.Scaffold630  5680092 68 + 20921866 I
e caeRem4.Crem_Contig0   627216 61 -  4500979 I

a score=2830.000000
s ce10.chrX             3522357 15 + 17718866 AATTGGATGCTCCAT
s cb4.chrX              8649829 15 + 21540570 ATTCAGATGCTCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   627277 15 -  4500979 AGTTCAACATTTCCA
i caeRem4.Crem_Contig0  I 61 C 0
s caePb3.Scfld02_0      1928472 15 +  4147112 AGTTCGATGCTCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I
e caeSp111.Scaffold630  5680092 68 + 20921866 I

a score=6170.000000
s ce10.chrX             3522372 8 + 17718866 CATCTGAA
s cb4.chrX              8649844 8 + 21540570 TATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   627292 8 -  4500979 CTTCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5680160 8 + 20921866 CATCTGAA
i caeSp111.Scaffold630  I 68 C 0
s caePb3.Scfld02_0      1928487 8 +  4147112 CATCTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   41927 1171 +   823664 I

a score=246205.000000
s ce10.chrX             3522380 588 + 17718866  
s cb4.chrX              8649852 623 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   627300 593 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5680168 615 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1928495 609 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   43098 519 +   823664  
i caeJap4.Scaffold18194 I 1171 I 1004

a score=-4641.000000
s ce10.chrX             3522968 14 + 17718866 --GTATTTC---AGAAATT-
s cb4.chrX              8650475 16 + 21540570 t-tttcaat---cagaAATT
i cb4.chrX              C 0 I 1031
s caeRem4.Crem_Contig0   627893 17 -  4500979 tgtttcttt---GAGAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5680783 14 + 20921866 --CTAAAAT---CAAAAGT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1929104 17 +  4147112 --CTAGATTTTGCCCAAGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I

a score=-28183.000000
s ce10.chrX             3522982 246 + 17718866 ------GTTTACACTTTTCTCCTTTCTGACACGTCATTTCAAAACTTGTATTTTTGAAAATATGTTATAAAGTATCAAAATTTTACAATGCTTTCGGA-ATAT-AAAATAATCAAAATTCATATATCAAAAGAAGAGATTACAAGATTTGAACAAGCTCCTCATAACCAACTTTATTTTTGATCTTTTTCTCTGAATATTTGTCAAACTGTAATTGCTTCAAGTATCTGAAAA-AGGAACTTGCA-----CATAGTATGA----------------------------------
s caeRem4.Crem_Contig0   627910 193 -  4500979 --AAACGTCG---------AACTAACTAACACGTCATTTCCAAA-----------GAGGGTAACTAGTGAag-atgaaactttttcaat-cgTGGGTG-GTCT---ATCGagtagaattt--------tcaatttgagttCGA------GTACATATTC-----------------TCTTCGCATCTAGACAAA-------------------------------------AATATTACCTTACT-----CATAAAACTCCTGCCCAAATATTGAACCTAGACAAAAAGTTTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5680797 217 + 20921866 GTGCGGGttgaaa------aaatcaggaacacgtcattc---aa-----------aaacatataTCCTGATA-ATGGAATTCTCATAAT------GTATATTT---TTCAAGGGGggttt--------aaaaaacaaattata-gAACAGTACATTCTCAGaataatc-attttatttcccAATTTTCGGTGAGTACATTTGCCA-----------CTTCTCCAgactgaaaatatcaaacCACT-----CATAGAACACACGCACAA--CTTGA-------------------
i caeSp111.Scaffold630  C 0 I 30
s caePb3.Scfld02_0      1929121 161 +  4147112 GCAATAGTTG--------------------ACATCACTT---AA-----------ATTGATAAGt--tgaga-ctttttttttcaaaat------tta-atgtGAGGTTGAGTGggatttctggg--aaaaaaacatatt---------ggaTATACTC-----------------------------------------TGCTC-----------CTT-----GCCTGAAAATATTAGATTACTCATAGCATAGAATACAAGAACCA--ATTGG-------------------
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=1453.000000
s ce10.chrX             3523228 14 + 17718866 TCGTCGTACTTTTA
s caeRem4.Crem_Contig0   628103 13 -  4500979 TTGTCGAACTTTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1929303 13 +  4147112 ATGTCGAACTTTT-
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeSp111.Scaffold630  5681014 30 + 20921866 I

a score=7889.000000
s ce10.chrX             3523242 173 + 17718866 TTTACATTTACCCATGCATCCGTATCTTATTCC-----------AATAACTGGAGATGGAAAGAATCGAAAACAACAA--------CTTCGTATC--------TTATTGTTGTGCAGC------------ATACTCATTTGATTCTTCAACTGCAG----AGG----AATAGTAAAAGC-AGAAGTAAACTTCGGTTTTAATAAACA---------------TTGATATT---TTGGT-C
s caeRem4.Crem_Contig0   628116 204 -  4500979 ----TATTTACTTATGAATCC------AATTTCAAATATGGAAAAAGAACTAAATATCTATGGCTC-AAAAACAAGAACCATTGTGCTTCAGCTCATTCCTGGGTATTGTTGTGCAATGCACGGT-----GTGCTCATTTGATTT--------CAGCAAAAAGCAATAGCTGCAGAAGACGAGGCCGAATTCTAGTTTCCGCAAACAAAGT-----------TCACTATTACTTTGGTC-
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold630  5681044 194 + 20921866 TTTCTATTTACCTATTCAtcc------aatttc--------gaaaaaaagttgattctcacggtttgaaaaacaacataCATTGTGcttcatttcattatttaaTATTGTTTTGCAACGCGTTTTTGCAGTTGCTCATTTGATTC--------CAG----ATG---GTTCagcaaaagg---aaaaaaattcttgatgCA-CAAACAAAGT-----------TTACTATTTCTTCGGT--
i caeSp111.Scaffold630  I 30 C 0
s caePb3.Scfld02_0      1929316 191 +  4147112 ----TATTTACCCATGCATCG------TATTAC----------AAAAAACTAGAT--------ATAGGGAAACAACAATCCTTGTGCTCCAACTCATTCCAGGGTATTGTTGTGAGATGCGCGCT-----CTGCTCATTTGATTC--------TAG----AAGCATATGctgcaaaaaa-acaacaaaactctGGAATTC-catagaaaataattttgaacgtttttgttttgtgggc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-1410.000000
s ce10.chrX             3523415 19 + 17718866 AAAAAAAATTGAAAGCCGT
s caeSp111.Scaffold630  5681238 15 + 20921866 T----AGCTTGCCCATAGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1929507 19 +  4147112 tcaaaagtttttcaatgtc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeRem4.Crem_Contig0   628320 14 -  4500979 I

a score=-30000.000000
s ce10.chrX             3523434 189 + 17718866 ---CAACA-----TTAGTGATCTTTAATAGCTT----------------CAAGAGGTTTCCGATTC-------------------------------------------TTGACAT------CGAACATCAAA------------TTTTTGGCAAA-------------GATA---------------AATTCATCCGC----------ATGTATGGATTTTTGAAAATGTTAAAGAGCTATTTTA----------------AAACTAATGAATC------ACTGGAAACAC-------------------TTTCGAA-------AAATTATTTTCTCCTCCCACATTATTCAGAATCAA
s caeRem4.Crem_Contig0   628334 212 -  4500979 TAATACTA-----TTggttttcatttc----------------------gaaaaggTTTCCAAT---------------------------------------------CCACGAT------CAAACATCT--------------TCCACAACCAA------------GAAca---------------aatttattcga----aattttgatttgaagagTTCTGAagtgttat--ttttatttttgtttattg--------aaGTAGATCAGtccaaaataatgaaataacACCTTTTGaatactatttttttctggaagataTAAGTTATTCTTTAGAATTGT---------------
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold630  5681253 191 + 20921866 TAATAATA-----CTGGTTGTGTTTTG----------------------TAAaggttttcaaatt--------------------------------------------cttcgaT------CAAACATCGTGATTCG-------TTTCAGACTCATCTCAGATTgatgaaaa---------------cttttattcga------------attaggggatcaaaaactgatga----------------------------aaacagaatattt----------gaagaaC-------------------GTTCTGACCAAAAAAGccaattttttagtttttattt-tttagtctCAG
i caeSp111.Scaffold630  C 0 I 18
s caePb3.Scfld02_0      1929526 329 +  4147112 tcCGACCAAAcatcttttttagttttaggATCTTCCGGGATTGTTGAACCAAATTTATTCGAATTAGTGGATTAGAATCTGGTCAAAAACAGAACGATATAAGAACACCCTGCGATTGACACCAAACATTTTCGTCTGGACATATTTTGCGAATAATGTCTAGTTGTTGAACAAAGAGTAGTCTATGTACTTTACTAGGTTCCCACACTGTCTTTAAAGTTTCACAACTCTTAAATTACCATTTTCGTGTTTTACTCCACTTAAGTGaagtgtttc-------tgaaaaaag-------------------tttcggatTCACTTTgatccttctttcttttcttatt-tataGCC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-1883.000000
s ce10.chrX             3523623 20 + 17718866 CCTAGGACGATATGTC---TGAA-
s caeRem4.Crem_Contig0   628546 12 -  4500979 ------------CTCCATTTGTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1929855  8 +  4147112 ------------TTCC---CGTA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeSp111.Scaffold630  5681444 18 + 20921866 I

a score=-16537.000000
s ce10.chrX             3523643 145 + 17718866 C-TCAGCTCA--TCTTAATTAGAATCTCAATGTTTCTATGATTTCTCACGTACTCGCTACCTCAATTTGTCTAGC-GTCCATTACTTC--------TTGGGAGCTCCC----------------TT----TTTTCTCGATGCTTTTTCTAATTATTCTCACGATTAGAGTA-TATGAT-----
s caeRem4.Crem_Contig0   628558 141 -  4500979 ------------CTTTTCTCAGACTAAAAAAGTTAACCT---CTGTgctttattat---tttcagttttcagagcGGTTCACACAACA--------CTTAATGCAATA----------------TTTAACGTTCATAACTTCTATTTCTAACTGTGTTTTGGTCAACAGTCTGAAGATTTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5681462 108 + 20921866 CTCATGCTTAATATTTAATTTGACTCTAAAGATGACTCCAGTTTGTGTTTTACAC-----CTCAAT------------------------------CTCGACACCCAC----------------TTCCTTCTTTATTGTTATTATCC----TCACTCTTTGCC--------------------
i caeSp111.Scaffold630  I 18 C 0
s caePb3.Scfld02_0      1929863 165 +  4147112 --CCAGTTCA--GTTCAATTagaatcacaatttttctttggattGTCACGTACTA-----GCCAGTAT---GAGCCGTCTAGAAAGTTGCCAATTGCTGGGAGCTCCCAGCAATTCAGGATGCATTAATATTTCATCGTTGTGATTTCTAATTATTCATTTACGCAGCGTC-AATGAT-----
i caePb3.Scfld02_0      C 0 I 65
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=476.000000
s ce10.chrX             3523788 5 + 17718866 TTCAT
s caeRem4.Crem_Contig0   628699 5 -  4500979 CCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5681570 5 + 20921866 TTCAT
i caeSp111.Scaffold630  C 0 I 18
e caePb3.Scfld02_0      1930028 65 +  4147112 I
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-423.000000
s ce10.chrX             3523793 34 + 17718866 TCTCGAAGGTCACTAGAAAATGT-----TTTACAATAAC
s caeRem4.Crem_Contig0   628704 34 -  4500979 TCCCAA-----ACAAGAGTTTTTCCGTCTTTGTATTCAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1930028 65 +  4147112 I
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeSp111.Scaffold630  5681575 18 + 20921866 I

a score=607.000000
s ce10.chrX             3523827 25 + 17718866 -----CCAATTTTTAACAATGTATTGAAAT
s caeRem4.Crem_Contig0   628738 25 -  4500979 TGGTCTCATac-----caatttctttcaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5681593 20 + 20921866 -----CCAGTT-----CAATtaattgaaat
i caeSp111.Scaffold630  I 18 I 31
e caePb3.Scfld02_0      1930028 65 +  4147112 I
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-237.000000
s ce10.chrX             3523852 31 + 17718866 AATACTTTTATAATTAATGCAGTTTCACTGT
s caeRem4.Crem_Contig0   628763 30 -  4500979 tataatcaaaaaatt-attcggaTTCTCACG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1930028 65 +  4147112 I
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeSp111.Scaffold630  5681613 31 + 20921866 I

a score=566.000000
s ce10.chrX             3523883 13 + 17718866 CATGAGGCGATAT
s caeRem4.Crem_Contig0   628793 13 -  4500979 TACGAGCCAATCT
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0      1930093 13 +  4147112 CTAGGGACGATAA
i caePb3.Scfld02_0      I 65 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeSp111.Scaffold630  5681613 31 + 20921866 I

a score=-2783.000000
s ce10.chrX             3523896 26 + 17718866 GCCTAAATA-TTTAAAATTCTGATGGA------
s caeRem4.Crem_Contig0   628813 24 -  4500979 GTCTAGATA-TCGCAACT--TGATGGG------
i caeRem4.Crem_Contig0  I 7 I 32
s caeSp111.Scaffold630  5681644 31 + 20921866 GTCTAGAAAGTCTCAAGT--TGGAGGGGTCTCC
i caeSp111.Scaffold630  I 31 C 0
s caePb3.Scfld02_0      1930106 17 +  4147112 ----------ACCAAAGT--TATAGG----TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-1146.000000
s ce10.chrX             3523922 22 + 17718866 TCAGAAACAAAAG---TGGTAAATT
s caeSp111.Scaffold630  5681675 18 + 20921866 CCACAATCGGAGA---TGC----AT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1930123 21 +  4147112 CCAGAGGCAGATAGCTTCG----GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I
e caeRem4.Crem_Contig0   628837 32 -  4500979 I

a score=-43464.000000
s ce10.chrX             3523944 409 + 17718866 TTGCTCAACTTTGCAATTTTTTAACATAATTTGTTAACTTTGGCCGCTGGGCGTATTATTACTAACGTT----TTCGAA---AAATAGTACAAACTTTTTGAGAATATCCGAGTAC-TGCTGAAGGTTTGGTGGTATAAAAATTGTAGATAGATAATTTTCGCTCTG-GTTAACAAGTTGTGATGTCTGAAAGCTTTGTAATTTTTTGGAAC------TTTCAACACATTTTTCAT----TGTGCCA--------------ATAATTTAAATTTCAATTAAAATAGTAGCTTCGCCCCG----AAATTTACTACACATTTTATGGAAAAAATGCAAACGCTTTCCGTATTATT--GAATTTTGCAACAGGATATTCATAACTTTCATAACTTTCAAAGTAAATACACAACATTGCGTTTGAAAGTGACACCATCAACATCACGATATT----------------
s caeRem4.Crem_Contig0   628869 301 -  4500979 tttttcatcgatgTGATTTCTAATTAT--TCTTTTA---------------CGTAGTGTCATT-GATCC----CTCCGACTCAG----------------------TTCCAATTTT-GTTTGGAACCAGGAAAATTTAG----TTGATGGAT-------TGGTTC---GTCCATACA-AACGAcgtct-----ctttttattttttgaaaaaaaagttt---------gtacTTGCATAGGGAGCTCAAAGTTAAGAACAAATGATCTA----------------------TTGTCTCTGCAGCAAAATCTGAAGAGTATTA---------------------------TATT-----TTCCTAAACACTTTATTACTGcc--------------aattgcattttttgccTTGCACCTA---------------------GAACATTTTCGATTGCAACTAca
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold630  5681693 221 + 20921866 TAATTCATCGTCGCGGTTTCTAATTAT--TCATTTA---------------CGTAGCGTCAATAGCTTC----TTTTGT---GG----------------------GTCCGATTGC-TACTCAAACCAGGA---------------AGGCAG-------TTTTTCTG-GTACATTGA---------------------TGATTATTGAGTCA------T---------GTTCCTGT----TGAGATT--------------TTGATTTA-----------------------TATCTCT----CAAGTCATCGAACGGTTTA---------------------------TCTCAGAAATTCCTGGAAATTAAGTTTATGAG--------------AAATG--------ACCGCGCATT---------------------------ATT----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1930144 236 +  4147112 TAGTTTAGGAT--TGGTTTTTCTCCAT--TCTGTTa---------------tgaagttttggaaggtCCAGGTTTTTGTTCCGGAGAGTAGAAA-------AACTCatctgatttcattttcaaaatctgaa------------tcaGAAAG-------TTGTCCCATATCCATAGA---------------------TCTTTGGTTCAACA------T---------CTTATCGT----GGAGTTC--------------ATACTCTAA---------------------CTGTTTCT----TTATTTGTCATgctattca---------------------------aatt--gaattcttcCAA-------TTCCGAG--------------AA-----------------CATTTG---------------------CGACATT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I
e cb4.chrX              8650491 1031 + 21540570 I

a score=-7243.000000
s ce10.chrX             3524353 42 + 17718866 -CTTTGTC---------------CTTGCACTTCCATCAATGGCA-GGTTG-------CAGAAAAAA
s cb4.chrX              8651522 51 + 21540570 cttttttctagctttgcACAAATAGTGCAA---------------Agaagaaagagcaaaaaaatg
i cb4.chrX              I 1031 C 0
s caeRem4.Crem_Contig0   629170 26 -  4500979 -ctttttc-----------------tgcaa---------------aaatg-------aaaaaagtg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5681914 36 + 20921866 -----------------------CCTGCAAGTGCACTTTTGCAAACTAcg-------caaaaaatg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1930380 29 +  4147112 -----------------------CTTGCAACTGaattt-------ctctg-------caaaaaatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   43617 1004 +   823664 I

a score=84898.000000
s ce10.chrX             3524395 258 + 17718866 AAGAAACGTGTATAGA-----------AGTGATCTCGTAAATGCAAAAC------TTTAC------CACCACGTCATTGGGACCAA----GTGGAAGAAATGGGG-----------------GCAATATATGTCCTGGGCTTTCTAATTTCCACATCTTCCTTGTTTTC-------ATACAACCGGTTTT------CTTTCGTCTT----------TATTTC--AACTTATTCTT-----TTTTTTTT--------GT--TTCCTTTTCATTATGA--------------------------------ATACTCATCTCCAACACAGATGTCTGACTCATTCAGAAG---CAATTC-------------ACGCGCATCTGATTTCTAGCA
s cb4.chrX              8651573 272 + 21540570 aggataCGTATACTAT---------------GTCTCATAAATGTAAAA-------GTTTCAACGA-CA-CACGTCATTGGAAACCA----ATGGAAA-------------------------AAAGGGGAGGT-----GCTGTCTAATTT-CGCATCTTCCTTGTTTTCTTTGTCAACTCAACTTTTTGTGCTACCCTGCATCCCTCGCTTCTtaatattccagaatttatTCTT-----TTAGATTCCTTATGTAGT--AGTACTCCT----------------------------------------------CCGCCTTCCC---TGTCTGACTCACTCAgaag---caatttttttctgcgCGAAGCTCGCGTCTGATTTCTAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   629196 302 -  4500979 gtgaAACGTGTACTCCCCTGT----CCAGCGGACTCATAAATGTAAAGTCCGCTTTTTTC------CA-CACGTCATCGGAACCAA----ATGGAAAGGATGGgg--------caatcgaagaaaaaagggga-----gcTTTCTAATTT-CGCATCTTCCTTGTTTTT-------AGCCAACTTTTCCT----------CTCCCTC---------TATTCC--AACTTATTCTTA----TTTCTCTTCATATGTAGT--AGTATACCCGCCACGT------ATTCGTCGTTTTCTTTTGACAAAGGCGACGTCGTCGTCTTCCC---TGTCTGAGTCATTCAGAAG---CAATTC-------------ACGCGCATCTGATTTCTAGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5681950 297 + 20921866 agaaaacgtGTACTCCCGTGT----CCAGTTGTCTCATAAATGTAAAGTCCGCT-TTTGA------CA-CACGTCATCGGAACCAAGAAGATGGGGgcaatcgag-----------------aaaaaag---------gctttctaattt-cacatcttccttgttttc-------agccaactttttct------ctctttccttc---------t-tccc--cttttattcaaaac-tttatTCTTCATACCCAGT--TTTCCCGCCATCTAGTCACCGGATCCGTCGTCTTcg------------ttcctcttcttcctctcc-acGTATGACTCATTTAGAAGAAACGATTC-------------ACGAGCATCTGATTTCTTGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1930409 284 +  4147112 agaaaacgtgTACTCGCCTGT----CCAGTGGTCTCATAAATGTAAAGTCCGCT-TTTAC------CA-CACGTCATTGGAACCAA----ATGGAAAAGATGGGG-----------------CAA----------------TTCTAATTT-CGCATCTTCCTTGTTTTT-------AGCcaacctttttc------ttcttccccca---------TATTCC--AACTTATTCTTA----TTCCTCTTCATATGTAGT--ATACCCGCCGCCACGT---------AGTCGTCTTCTTCGGGCGCCGTCTTCTTCGTTTGCTCCCCC-ACGTCTGAGTCATTCAGAAG---CAATTC-------------ACGCGCATCTGATTTCTAGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   44621 311 +   823664 AAGAAACGTGTATTCCTTCTTTTTGCAAGTGGTCCCATAAATGTAAATTCTGGC-GTTTCACTGGCCG-CACGTCATCGAAAccaa----atggaaaaaatgggcATAGAAAACGtcggaggaaaaaaaagagtgagGGCCTTCTAATTT-GGCATCTTCCTTGTTTTT-------CGCAGACTCTTTTC------CTCCTTCCTTGTATACT---TATTCC--GCCTTCAtctttttgcttcttttgcATATGTTGTCAGATATACCCGCCACGT-------------------------------------CGGCTTTTTTCCG-CCGTCTGACTCATTCAGAAG---CAATTC-------------AGGCGCATCTGATTTCTAACA
i caeJap4.Scaffold18194 I 1004 I 852

a score=-5458.000000
s ce10.chrX             3524653 14 + 17718866 TCTA---------------------------------TATATTTTTT-
s cb4.chrX              8651845 16 + 21540570 TATA-------------------------------gatctatttatt-
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   629498 47 -  4500979 CATATACCGTAAAAATTGTATTAGAGCGgcatgtcgctctatttttc-
i caeRem4.Crem_Contig0  C 0 I 214
s caeSp111.Scaffold630  5682247  8 + 20921866 TCTA---------------------------------------TATT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1930693  9 +  4147112 TATA---------------------------------------TATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I

a score=16202.000000
s ce10.chrX             3524667 166 + 17718866 -----------------------------CTTCTTGCCGCTATCTATTTTTTCTTCTACTAAATTTCATTCATTAGCTGCAGAG-CGAAAGACGTTCGGA-TGTCT----TTTCTCGTATTCTTTTTTGGAACC-ATGGTCCAAACAAAAC-------------TCATA-----------ACATCAATATTCCGTCATTCCATATGCTCCTATTTTGGAAACGTTC
s cb4.chrX              8651871 148 + 21540570 ct-------ttttt------tacttatttttttt-----tct-----tcttctttctactAAATTTCATTCATTAGCTGTAGAGCTCAAAGACGTTCCATATGTCTcggattcttttttctccttctgaAACCT--------------AGAT------------TCATA------------------TTTCTTGGATATGC-----------TTTTCGAATCCTTC
i cb4.chrX              I 10 I 77
s caeRem4.Crem_Contig0   629759 180 -  4500979 ctaatacagtttttacggtatatttatttcttct-----cCGTA---TCTTCTTTCCACATAATTTCATTCATTAACTGCAGG--CCGAAGACGTTCc---tgtct----tttctttttctccttttcaaaatt-atgatCCAAACAAAAAC------------TCATAACATTCCAGATCCCACATTTTCCCGTA----------------TTTTGGAGTCTTCT
i caeRem4.Crem_Contig0  I 214 C 0
s caeSp111.Scaffold630  5682255 145 + 20921866 ------------------------------TTct-----ccatc---tcttctttccactaaatttcattcattagCTGCAAA--CAGAAGGCGTTCCAA--------------ttttattcttgtttttgcaTGATGGTCCAGAAGAAAAGTATACTT-----TTatg-----------tcttcattttttctccaattt-----------tcttaggaaccttc
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      1930702 158 +  4147112 -----------------------------CTCCT-----CTATC---TCTTCTTTCCACTAAATTTCATTCATTAGCTGCAGA--GCGAAGACGTTCCCGAtgtc-----ttttttcccttctttcttatttttgatggTCTAAACAAAACTTATACATCCCCCTCATA-----------TCCatatttcttcgtt--tct-----------ttttctgaacctTT
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18194   44932 852 +   823664 I

a score=9866.000000
s ce10.chrX             3524833  79 + 17718866 ------------------CTAGACATCTTTATAACTTCTGGCACGTTCTGCTGTGTGGCTTTATGTGCAATTTTATTT--TCTT-------------ACCGTG--------AGCGCGGGC
s caeRem4.Crem_Contig0   629939 115 -  4500979 CTCGGAACCATTAGAATTTTG---ATCTATCTGCTTTCGAGCATTTTCCGCATTCTGGAATTGCGTGgctctccaatt--tttttcctcattttttgggtGTGTAGCAAACAACGGGGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5682406  96 + 20921866 -----------------tctg---atatttctgtttttcatcgttttgagcattctgaaattgcGTGGCCATTCGGTTCGTCTTCCGCTGTTT----GCTGTGTAGCAAACAACGGGAGA
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      1930865  94 +  4147112 -----------------TCTG---atcttcctgtttttcaacattctAAGCTTTCTGGAATTGCGTGGCcccttcgtt--tttttattcgttc----ACTGTGTAGCAAACAACGGGGGA
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652019  77 + 21540570 I

a score=74351.000000
s ce10.chrX             3524912 366 + 17718866 GATACCTCCGCCG-AAAATATCATTTTTCAACAAAAAAA---AACGAACGGGACGTCGTGAATAGGCAATGTGACAGAATTAGGGAGCGT--GTAGATCCTATTAGTAAAATAATAAT--GAGCATCCAAAGAGC------ACAACATACGTGATGTCTCGATGC--CTTCCCTTG-TT-CCGACCATA--------------TTCTGAA-TTTTC------------TGCCATTTCCTTGCTGACTCATGCCGCTGGA---AGA--------------CTCTTGCTCCC----------------------------------TCAGAAA--AAAAGTAATAAGAA---ATTATTTTGTGTTGGAGGAAAGAAAAAA-AAAGTTCCCAGTTCTAC--------------TTTTTTCACACGTCTTTTTTGC-AAATCAAGTTGACTG--------CGTGATTCAGCA--TGGGAAAAAATGTCCTTGATACT
s cb4.chrX              8652096 437 + 21540570 GATACCTCTGgcgaaaaatatcatttttcaaaaaaaaaagagaacgaatGGAACGTCATGCATAGACGATGTGCCAAAATTAAGGAGGGA--GAAGATCCCATTAGTAAAATAATAAT--GAGCGTCAGAAGAGACAGAGCACAAC--ACGTTGTGCTC----TT----CCCATTGTTA-AAAACCATA--------------CTACCTTATTCTCCCGTTACTCCAAAGG-----TTTCGCTGATTCAT-Ccagt------aatttttcatattttg-tttcTCTTCTCCAGAATTTCTAGTATGATCCGTATCctgaaaacttctag----aaaagtCAGGAGGA---ATGAATGTGAGacagaaggaaaaaagtagaaagtTCCCATTGAAAGTTAAataagtttctttttttctcacgtATCCTGCAAAAAGTC-CATTGATGAGAGTATCAAGTGATTCATCG------ACAAAAGTTCCTTGAGATT
i cb4.chrX              I 77 I 519
s caeRem4.Crem_Contig0   630054 361 -  4500979 GGTACCTCTGccgaaaaatatcatttttcaaa----------aacgaataGAACGCCGTGCATATACGATGTGCCAGAATTAAGGGAGGA--CTAGATCCCATTAGTAAAATAATAAT--GAGCATCTCAAGAAG------GCAAC--ACGTGATGTCTCGAACC----CCCGTTG-TG-CAAACcata--------------ttccatt-ttctc------------agG-------TCGCTGAATCATACCAATGaa---aaattctctcatttcGCTTTTTGTTCTC----------------------------------TCCGG----AAAAGTCATGAGAA------AATGTGTgactgaaagagaaaaaactaaagTTCCCAAAGAAAG-TGGATAA------CTTGTTCTCACGTATCttgcaaaaaatcgaattgaaCGGAG-----GCTGATTCAT-----------AGAGTTTCGTTAGATT
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold630  5682502 351 + 20921866 GGTACCTCTGCcgaaaaatatcatttttcaaa----------aacgaatGGAACGTCGTGCATAGAAGATGTGCTAGAATT-AGAGTGAA--GTCGATCCCATTAGTAGAATAATAATGAGAGCATCTGAA------------AAC--ACATGATGTCTAGATCCTTTTCTCCTTG-TG-TAAACTATA----------------ATTTT-CTCTC------------AGA-------TCGGTGATTCATACCAAACTG---ACATTTCCAG-------CTCCTTTAATC----------------------------------TTTGGTAGTGAGAGtcacaagaaaaaatgaatatgtGACGGAAG--------------GTTCCCATAGAAAG-TAAAAAA------CTTCTTCTCACGTATCCTGCAA-AAATCTGATTGGGTTACt-----attactttttga------tatacAATTGTGTGATAAT
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      1930959 385 +  4147112 GGTACCTTTGCcgaaaaatatcatttttcaaa----------aacgaatagAACGTCGTGAATATACGATGTGCTGGAATT-AGGGGCGAGTGTTGATCCCATTAGTAAAATAATAAT--GAGCATCTGAAGAAA------ACGAC--ACGTGATGTCTCGAACC------CCCTG-TGCCGAACcatattccgtttttttccttctttt-ttctc------------tga-------atcaTAGCAAAAgccaaaaagaataaattcccaa-------tttctcttgtc-------------------------------ttttttgaaagcaaaagtcatgagagaaaatgaatgtgtgacgggagaaaaa------aaagttcccatAGAAAG-TAAAGAA------CTTGTTCTCACGTATCCTGCAGTATATCTGATTGGGTTGCT-----ACTGATTCATGGGGTGGTGACagagttttgtga----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I

a score=963.000000
s ce10.chrX             3525278 69 + 17718866 --GGAAGTATGATCCAGACAATGACGAATGTTAGCTGATTG------CATTG------------------AGT--CAAAGTGTTCGAAATTTCTCAT
s caeRem4.Crem_Contig0   630444 71 -  4500979 -------------------------GAATATCAACTAATCAAATTGATATCTGAAGTACACCTATATTGCATTGtccaaatattgaaaatttttta-
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold630  5682858 77 + 20921866 AGAAATGTATGATGCAGacagtt-tgaaaatgaactgatTGAGACGACATTT------------------AAT-CAGAAGTGTTCGAAATAACTCAT
i caeSp111.Scaffold630  I 5 I 356
s caePb3.Scfld02_0      1931344 75 +  4147112 aaaaccgCATGATGTAGACGATT-TGAATATTGGCTAATTGAGGCGGCATTT------------------ACCACCAAAACGTTCGAAATTGGT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I

a score=-5201.000000
s ce10.chrX             3525347 90 + 17718866 GTTCAGCCTTTAAATCAAAGT-------GCCCGTATTCT-----TTTTCAGATAGAGCTGATTTTGAATTTTTGCTTCTTTTCATAAACTTTTTTATAAGTA
s caeRem4.Crem_Contig0   630515 85 -  4500979 --tcaatttt----tcaaagtttcgacAGCCTATAATACCTAATTTATCAGACGTATCTTGTTTca----tctacttcttct-------tttgttaTGAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1931419 38 +  4147112 --------------------------------GTATTGTGTGAGTTGAGAG-------------------TCTAGTCATTGT-----------CTAGGAG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I

a score=-442.000000
s ce10.chrX             3525437 338 + 17718866 GCACTATTAATTGATTGTTTTCATTGCCACAGTTGAATAGAAACAGTGTTCAAACAACTATTAGCTAATTTTGTTGGTAAAGTTAGACGGTGTGATCTTAAAATGTAATGGGCCAGAAATGGCGCCAAACACATCTGAGAATCATAATGAAACATTTTT----CAACGG---ATTTGCAGTTTTAAAATTTTA-----------AATTCAACGATTTGGT---GAATAGC------------AAGTTTCCAAAACGAAAACCTCATCTTCTTGATAAAGTTTTGTTTGaaaat--ttta-aaaatttcaaaaaaatttcaaaaattGGGCAAACTTAAAGTGTAACATTTTGAAAACCTTA-TTTGAAAAACAAT
s caePb3.Scfld02_0      1931457 298 +  4147112 ----------------GTTTTGAT---CAGGTTTGATTGGGAATAATCTT--------TATCAATCATTTT-------AATGttcga-------------aaatgt---------gaaatg--------CTCTTCTGTAATTTatgttcaaacttttttttcccaactgTGTATTTATTATCT--AGTTTTTAGTGGATACCCTACTTCATCTATTTGGTTTGGAATTTCTGCTCAATTCAGAGTTCTTCGCAGTGGAAGTTTCataatctt-------tttcatttttaaatgaTTTATAAAATACTAAACAACTATGAAAGGTCGTGTAACC----AATATAATGTATTTTGGGTTTtagtctgaaatgaaat
i caePb3.Scfld02_0      C 0 I 166
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630600   0 -  4500979 C

a score=0.000000
s ce10.chrX             3525775 43 + 17718866 GACGCGTTTTTTTTTTCAAAACCTGTATTTTGACGGTACGCTT
e caePb3.Scfld02_0      1931755 166 +  4147112 I
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630600  0 -  4500979 C

a score=3174.000000
s ce10.chrX             3525818 67 + 17718866 CATGCACTT-CAAATTACTAGATGTGTGTCCAAACGTGACTTGCTCATTTCAATGAATTCTGTGTCAT
s caeRem4.Crem_Contig0   630600 68 -  4500979 CATGTACTTTCCGATGGTTAGGAGTGTGTCCAAACGTGACTTGCACATCCCACTGGTTTTGATGTCAT
i caeRem4.Crem_Contig0  C 0 I 157
e caePb3.Scfld02_0      1931755 166 +  4147112 I
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I

a score=0.000000
s ce10.chrX             3525885 57 + 17718866 ACAAATAATGTAATGTTTTTTTTTAAGGTGGAGTACTGGGGATTTTGTCGAAAaaac
e caePb3.Scfld02_0      1931755 166 +  4147112 I
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=1129.000000
s ce10.chrX             3525942 68 + 17718866 acctcaaaaagttttagattttttcaaaaatatacagtcaaagt---gtggaaaa---------ttgttaaattttcaga
s caePb3.Scfld02_0      1931921 80 +  4147112 GCTTCCACAgtttttaggaattttgagaaataagaaGCCAAAAACAAGTTGGAAACCTTGAATCTTATTCATTCTTCGGA
i caePb3.Scfld02_0      I 166 I 91
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=0.000000
s ce10.chrX             3526010 124 + 17718866 gaaatatgagcttttattaaataccaaagcaatgtcgcatgcaattaaaacagaattggaatataaaaaccgtagaacttttttttgttcggtcgaatttcaaaattacgagtatcgaaactaa
e caePb3.Scfld02_0      1932001  91 +  4147112 I
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=-1342.000000
s ce10.chrX             3526134 182 + 17718866 ttaattgtcgtt---------ttttgagagtaac-------------taaaatatttcaag-ttttattcaaaacgttttactatgatatttggtcattttggaaaaagtttcaaacactttctgctctggcgctactccaccttCAGTACTCTCAATAGATTTTCAGTAATGATCACAAATGCCCTGTCCATTTTCCAATTCCG
s caePb3.Scfld02_0      1932092 141 +  4147112 TTTGATGTCATTATGATACACTTTTAAGAGTAACACTCCTTCGAAAATCCAATGTTTCAAGATTCCATTCA-------TCACTCCAATTTGCGAT-----TCGAAAAA----------------------------------------------CAGGAGATTGACCTTAGGAGTCTT---TGCTCCGTGTTTCTTTCGTT---G
i caePb3.Scfld02_0      I 91 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e cb4.chrX              8652533 519 + 21540570 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=-460.000000
s ce10.chrX             3526316 11 + 17718866 TTTACATTTAA---
s cb4.chrX              8653052 11 + 21540570 TTTGCTCTTGA---
i cb4.chrX              I 519 C 0
s caePb3.Scfld02_0      1932233  9 +  4147112 -----TTTCAACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e caeSp111.Scaffold630  5682935 356 + 20921866 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=-69.000000
s ce10.chrX             3526327 1 + 17718866 T
s cb4.chrX              8653063 1 + 21540570 T
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold630  5683291 1 + 20921866 T
i caeSp111.Scaffold630  I 356 C 0
s caePb3.Scfld02_0      1932242 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I
e caeRem4.Crem_Contig0   630668 157 -  4500979 I

a score=187.000000
s ce10.chrX             3526328 1 + 17718866 T
s cb4.chrX              8653074 1 + 21540570 C
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   630825 1 -  4500979 T
i caeRem4.Crem_Contig0  I 157 C 0
s caeSp111.Scaffold630  5683292 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1932243 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   44932 852 +   823664 I

a score=64477.000000
s ce10.chrX             3526329 91 + 17718866 ----TTGACAGAAAAAATATATCAATTTTCCATAACGCATGCAACGATTTCTTGATTTATA-TAGGC----ACCTGGTGGGAC--GGAATTTTAGATT---TCTC--
s cb4.chrX              8653075 92 + 21540570 ----CTGATAGATTACatatatcaattttcaatcaaaaattcaacgaTTTCTTGATTCATAGAAGGA----ATTGATTCataatcggaatttttgatt-----tc--
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   630826 96 -  4500979 ----CTGACAGATTACATATATCAATTTCTCATCAAGAATTcaacgattttttgatttata-aaaGA----GCCAAGAGCGGATAggaatttttgattcaacCTC--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5683293 90 + 20921866 ----TTGACAGATTACATATATCAATTTTCCATCAAGAATTCaacgattttttgatttata-cGAGC----GCCAGGTAAGaa--ggaatttttgatt----ttc--
i caeSp111.Scaffold630  C 0 I 35
s caePb3.Scfld02_0      1932244 94 +  4147112 ----CTGACAGATTACATATATCAATTTTCCATCAAGAATTCAACGATTTCTTGATTTATA-TAAGAGTGGGCCAAGTGGGAA--GGAATTCTTGATT----atc--
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   45784 96 +   823664 ttGCCTGAGAAATTACATATATCAATTTTCCATCAAGAATTCAACGATATTTTGATTTATA-TAGAA----GGTAGAAGTGTT--GGAATTTTTGATT----ACCAT
i caeJap4.Scaffold18194 I 852 C 0

a score=-6348.000000
s ce10.chrX             3526420 29 + 17718866 ATTTGCACAATCCTACGGTAGGCACTGAG
s cb4.chrX              8653169 28 + 21540570 ttccCTACGATTC-ACGGTGACCCTTCtt
i cb4.chrX              I 2 I 21
s caeRem4.Crem_Contig0   630924 29 -  4500979 CACTCCCCTCTCCTACGGTGACAACCATC
i caeRem4.Crem_Contig0  I 2 I 21
s caePb3.Scfld02_0      1932344 24 +  4147112 tttttttcggttcgtTGGTGTAGA-----
i caePb3.Scfld02_0      I 6 I 2
s caeJap4.Scaffold18194   45880 28 +   823664 ATCTACGTTGTCTTACAAGACCCTTTCA-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5683383 35 + 20921866 I

a score=501.000000
s ce10.chrX             3526449 30 + 17718866 CGTTTTTTAAAAACATTTTTTTTCGCCAGC--------
s cb4.chrX              8653218 22 + 21540570 tttactctagaaaaataataat----------------
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   630974 22 -  4500979 ttttttcgaaaaacattttgat----------------
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  5683418 22 + 20921866 CTCTCTTGAAAAACATATTCTT----------------
i caeSp111.Scaffold630  I 35 C 0
s caePb3.Scfld02_0      1932370 22 +  4147112 TCCcctaaaaaaatatgttcaa----------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   45908 30 +   823664 CATTCctcgaaaacacattttt--------tatcTAGC
i caeJap4.Scaffold18194 C 0 I 29

a score=747.000000
s ce10.chrX             3526479 22 + 17718866 ATGTTTG----AAGCCAGA------------GGGTTCC
s cb4.chrX              8653240 38 + 21540570 atattcGTGTTGGTCCAATATCCCTCCCCGTAGGTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   630996 29 -  4500979 ggttttg----gGACCAAT-----TTCTAGTGGGGTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5683440 29 + 20921866 AGTGTTG----GGACCAAT-----TTCTACTAGGTTCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1932392 22 +  4147112 gGTTTTG----AGACGTG------------TAGGTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   45938 29 +   823664 I

a score=23784.000000
s ce10.chrX             3526501 138 + 17718866 CCC-TCCTACACCGTTTTGCATCTTTTT---ATGCGACACTTATATCATTTTTCTAT-----TT------------------TTC-----TTTTCTAT--CTAAGAA------------ACTTGTCG-------AAAAACGTGAAC-GCATTCA-GTTTCAATCACCCTCTTGGGACCAATTTGACTGAG--GGG--
s cb4.chrX              8653278 156 + 21540570 gtcgtttt------ttttggaagcttTTTT-ATCAAACGCTTGTATCAT----TTCC-----CGAGAACCAACCAACAatattttgcacatttttttc--gaaaaaacgaaatggaG--ACTCGTAG----------AAGCTGAACGGCATTTTTGTTTCGATCACCCCCTTGGGATCAAGAGGAG-----------
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   631025 156 -  4500979 GCC-TTTA------TTTTGCATCttttttt-ATCTGAGGCTTATATCATTTTCTTCC-----CG------------------TGTtcgtattttttct--gaataaggaaaaacgagaaactTGTCGGAATA--CGAGAACTGAAC-GCATTTTAGTTGCAATCACTCTCTTGGGACCAATTTGACAGCTAG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5683469 136 + 20921866 GCC-TCCG------TTttgcatctttttttcatctgacGCCTATATCATTTCTTTCCGACAACG------------------tat--atattttcttt--gtaaaaataga-----------------------gaaaaactgaac-gCGTTAT-GTTTCAATCACCCTCTGGGGACCAATTTGACAGCT-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1932414 152 +  4147112 TCC-TCCG---CTCTTTTGCATCTTTTT---ATCTAAACCCtatatcatttttctcc-----cG------------------TAT-----TTctctttcaagaaaaatggaaa-gagaaaCTTGTCggagaaacgaaaaactgaAC-GCGTTAT-GTTTCAATCACCCTCCTGGGACCAATTTGACAGCT-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   45967 136 +   823664 TCC-TTCTACAcc-atttacatttttttt--ttctgccgtCCCTATCTTTTTCTTGC-----TA------------------TTC-----TTTTCCAT--GAA----------------ACTTGCGAAAAGT--AAGAGAACGTGC-ACATT---GTATCAATCACTCTCTGGGGACCTATTTGACAGCT-----AG
i caeJap4.Scaffold18194 I 29 C 0

a score=8545.000000
s ce10.chrX             3526639 89 + 17718866 AAAGAAAGGCAAAAGATGCATCATGTATCATGAAACTAGTTTCTGAAATAAGCAACGAAAAAAAA-------CGTGAAAGAGCAAGGAAGAT-------------CTTG
s caeRem4.Crem_Contig0   631181 79 -  4500979 -----AAGACAAAAGATGTATCataaa----------agtttctgaaaaa--cctggaaca-------------caaaaaaagaaaaaagttaacaaaaaaGCTGATCT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5683605 73 + 20921866 ---GAAAGACAAATGATCtatcataaa----------aatttttgaagaa---gaggaacaaaat-------ggcaaaaagaacaaagagaC-------------GTTT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1932566 69 +  4147112 ---GAAAGACAAAGGATGTATCATAAA----------GGTTcctgaaaaa---ctggaaca-----------tgcaggagaaaaaagaagaa-------------ttct
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   46103 78 +   823664 -----ATGACAAAAGACGTATGATAAA----------CGCTTctaaaaca---gaaaaacgaACTCTCTATCTGAAAAAGGACGAGTGACTG-------------Cttt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8653434 52 + 21540570 I

a score=168092.000000
s ce10.chrX             3526728 694 + 17718866  
s cb4.chrX              8653486 612 + 21540570  
i cb4.chrX              I 52 I 36
s caeRem4.Crem_Contig0   631262 684 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5683679 700 + 20921866  
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1932636 675 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   46181 621 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=546.000000
s ce10.chrX             3527422 1 + 17718866 A
s caeRem4.Crem_Contig0   631946 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5684379 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 69
s caeJap4.Scaffold18194   46802 1 +   823664 A
i caeJap4.Scaffold18194 C 0 I 78
e caePb3.Scfld02_0      1933311 0 +  4147112 C
e cb4.chrX              8654098 36 + 21540570 I

a score=727.000000
s ce10.chrX             3527423 44 + 17718866 TCCCAAGTTG--------TGCTCTCCAGAAAATCCAAAAAAAAAGAAGACGT
s caeRem4.Crem_Contig0   631947 36 -  4500979 TTCCGAGTTG--------TGGTCGTTTGACGATCCTTGTCACAT--------
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      1933311 36 +  4147112 TTCCGAGTTGTGGTCGGTTGGTCGCTTGACGATCCT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   46803 78 +   823664 I
e cb4.chrX              8654098 36 + 21540570 I
e caeSp111.Scaffold630  5684380 69 + 20921866 I

a score=-852.000000
s ce10.chrX             3527467 28 + 17718866 --------------TTTCTGATATT----------TTGGTTCCCTTGCACAA
s cb4.chrX              8654134 21 + 21540570 --------------tttccaatatt----------ttgggTTTCT-------
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   631986 31 -  4500979 --------------CCTCCAATATTTTGTCAGCCGTTGGGTTTTT-------
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      1933347 30 +  4147112 TGTcacatttcttctttccaatATT----------CGCGA------------
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold18194   46803 78 +   823664 I
e caeSp111.Scaffold630  5684380 69 + 20921866 I

a score=3870.000000
s ce10.chrX             3527495 16 + 17718866 -------CTGGTCTTCGGTGGTA
s cb4.chrX              8654155  8 + 21540570 -------------CTC--CGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   632017 14 -  4500979 -------CTGGTCCTT--CGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5684449 21 + 20921866 CCAGATTTCGGTCCTT--TGGTA
i caeSp111.Scaffold630  I 69 C 0
s caePb3.Scfld02_0      1933386 21 +  4147112 CGGGATTTTGGTCCTT--TGGTA
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold18194   46803 78 +   823664 I

a score=-20255.000000
s ce10.chrX             3527511 545 + 17718866  
s cb4.chrX              8654163 389 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   632031 468 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold630  5684470 447 + 20921866  
i caeSp111.Scaffold630  C 0 I 14
s caePb3.Scfld02_0      1933407 411 +  4147112  
i caePb3.Scfld02_0      C 0 I 59
s caeJap4.Scaffold18194   46881 391 +   823664  
i caeJap4.Scaffold18194 I 78 C 0

a score=-12333.000000
s ce10.chrX             3528056 77 + 17718866 --------------------CATC--ATTATAAAAATCTTGAATCTATCATGCAACTATTTTTTATAGTGAGAAAAGTTTTTGGAAAAAAGTTTGaaat
s cb4.chrX              8654552 32 + 21540570 --------------------AATC--CTTACAAAAATTT------------ACG--tgattttcaaac-------------------------------
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold630  5684931 36 + 20921866 --------------------GATCCACTTATATAGGCTGTA--------ATAC-----ATCGTCACAGT------------------------------
i caeSp111.Scaffold630  I 14 I 1
s caeJap4.Scaffold18194   47272 40 +   823664 CAGCAACACTGAAATACATTTAGC--GTCACAAAAATATTCG---------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1933818 59 +  4147112 I
e caeRem4.Crem_Contig0   632499 36 -  4500979 I

a score=-12965.000000
s ce10.chrX             3528133 60 + 17718866 ----ttaatttttttttaaatCTGGC---GTTTACCAATCTAGCAAAGTTTAAGACATTTTTTTATA
s cb4.chrX              8654592 52 + 21540570 ----ACATTTACTCATCTCATCTCATATCAGGCACacgtttttactttttcatgat-----------
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   632535 51 -  4500979 ----TTATTTTCTGTGTCGATCTCAT---CGTCACAAATACTTCAAGGTTTATGATA---------A
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  5684968 30 + 20921866 ----gtattttt-----------------cgtcaaaaa-----caaattttaagAC-----------
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold18194   47312 19 +   823664 TTCGATACGTTT-----------------ACTCATA-------------------------------
i caeJap4.Scaffold18194 C 0 I 73
e caePb3.Scfld02_0      1933818 59 +  4147112 I

a score=-5204.000000
s ce10.chrX             3528193 34 + 17718866 AATACTAAATACTAAATTTTTCAATAAGTCACTG
s cb4.chrX              8654644 12 + 21540570 --------gtgt--------------tttttttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   632586 31 -  4500979 GGGATGTAGTAT---AACTTCAGATATATTACCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5684998  5 + 20921866 -------AGTCT----------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1933818 59 +  4147112 I
e caeJap4.Scaffold18194   47331 73 +   823664 I

a score=-20776.000000
s ce10.chrX             3528227 93 + 17718866 GCGCTACCCCACCTCTGAGCAAAACTAAGAATAATTTAAAAATGACTTTT---------CTTTCAAAATCTGTAAAAGGTTGAGACAGTGTGAATAAATTCC
s cb4.chrX              8654656 28 + 21540570 -----------------------------------tcagaaaaaactttt---------ttcgaattatgtA------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   632617 30 -  4500979 -----------------------------------TGAGAATCGAAACCA---------GTCAACTTATCTC----------------------------CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685003 23 + 20921866 ---------------------------------CATAACTAATGTATATA----------------AATCCG------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1933877 63 +  4147112 ACGTTAACTCATTTAT-----------------CGTCACAGGTAGATATAACAGTTTAGTTAGGAGAATCTGCGAAA----------------------CTG
i caePb3.Scfld02_0      I 59 C 0
e caeJap4.Scaffold18194   47331 73 +   823664 I

a score=-10898.000000
s ce10.chrX             3528320 49 + 17718866 ATGACAAAGTAAATCAATCAACGTCCTTTCTTCTATCTTTCTATGTTAG
s cb4.chrX              8654684 45 + 21540570 --GGTAGGTGAtac--attcagatttttaagtttattttattttgtgaG
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   632647 33 -  4500979 CTAATAAAGAAAAT--GTAGCGATTCTT------------CTCTGTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685026 34 + 20921866 ---------TATCT--ACCAGAGTTTTTCTTCCTGTTTTCCTTTA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1933940 43 +  4147112 ATGATACATTAGGT--ATCTCAATTAGTCCTCCCTTTCTGCTTCA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   47404 44 +   823664 ATGGGACAGCAAAT--CCTTTTgctttt---tgtgattttccaTGCAGG
i caeJap4.Scaffold18194 I 73 C 0

a score=-8382.000000
s ce10.chrX             3528369 35 + 17718866 TGTGCCTCACAAATCGCAA---------TTTTCCAGCCTCGCAC
s caeRem4.Crem_Contig0   632680 10 -  4500979 ----------------------------------AGCTTCTCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685060 24 + 20921866 --------AAAGAT-GCGA-----------CGTgttctctccat
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1933983 28 +  4147112 ---GAATCAAGGAT-GTG------------TGCGTGCTTCCTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   47448 35 +   823664 ---------AGAGTCGTgctccttcttctttttctgcttttcac
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8654729 28 + 21540570 I

a score=-3713.000000
s ce10.chrX             3528404 87 + 17718866 TTTTTAATTGCTCCAGTTGTCTCTTTCTCAAGGG-----TCTTCACAATCGGTTTTCTTC-------CTTATTCTGACCTTTATG--TGTTTT-----GATCCAAA
s cb4.chrX              8654757 71 + 21540570 TTTCTAATTGCCCCTA--GTC----CTTCCTAGCATATATCCTCAA-------TCTGTTT-------TCTCATTTG---TTTCGA--CCTTGT-----GGC-----
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   632690 83 -  4500979 TTTTTAAATGCGCGTGTTGTCGCAACTTCCGAGC-----TTTCTCA-------TCTGTTTTTCTTGCTTTGCtctg---ttttg---ttttgt-----gaTCTAGA
i caeRem4.Crem_Contig0  C 0 I 96
s caeSp111.Scaffold630  5685084 78 + 20921866 tttttaattactcgagttttttcttcttctatga-------gtcgc-------ttcgttt-------tctgttttgagcttttGA--AGCTGT-----GATCTACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1934011 75 +  4147112 GTTTTAATtgctctagtttttt----ttctaaga-------tttcc-------ccttctc-------tttcttttgacCTTTC------CTGTGTGAAGATCTATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   47483 79 +   823664 tttttaattgCTCGCCTTGTCCTGTCCCCGTATT-------CTATC-------TGTTTTC-------CCTGTTCTGGCCTTTCCATGTGCTTT-----GATCCAA-
i caeJap4.Scaffold18194 C 0 C 0

a score=-10978.000000
s ce10.chrX             3528491 90 + 17718866 CAAGTCCTAACCTAT--TTGTTTTTTTTTCTTTATTTCCTCGTACTATATTTATAAATTTATG----TGTGCTACCAATAGAAA----ACACGCCAAAAA----
s cb4.chrX              8654828 75 + 21540570 CAAATTCTGATCC----Ttgttttattttcca------attGCGCAGCATCCTTATTTTTATA----T-------TCCAAGAAC----TGGTTCCAAAAA----
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold630  5685162 65 + 20921866 ----TTCTGATTCTATGTTGTTTCTTCTCCTA-------------------catctcttttca------------aaaaaaaacgttttcattcCAATCA----
i caeSp111.Scaffold630  C 0 I 17
s caePb3.Scfld02_0      1934086 48 +  4147112 ----tcctgatt-----ttgtttttt-------------------------cgtaatttttca------------tcaaaga------tTGTTCAAAATA----
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194   47562 85 +   823664 ----TCTTGATCC----ACGGTTTTCCCCTTCTAGAACATAGTAatctcccttttttttttgaaaact-------ctaaaaaaa----aagacccAGTCATAAA
i caeJap4.Scaffold18194 C 0 I 33
e caeRem4.Crem_Contig0   632773 96 -  4500979 I

a score=-7756.000000
s ce10.chrX             3528581 192 + 17718866 TATCA-AAAACCATCCACACTACTGC----A----AACCAATTTGGAAATT-----TTTCACta--aaattttattat--tttatttCTACCTCAAAA-----------------------------A--TTTTAGTAGT-----ACGGCCAATAAGCTGAAGCTGCCAATAACAGCCATTTTGA------------AT---TG-CGTAGTTGCAG--TCCGAGAATAGAG----------CCCCTCCCGTTTCCTCATTTC-------------------GTG-----AAAAAAGAC
s cb4.chrX              8654910 185 + 21540570 taac-----------tgaa--aattctcgGA----AAGCAATTcg-----------ttttattg--aaattcttcTTCGTAAAATTAATTCTCCAAAA-----------------------------A--TACGATTAC------GC---------ACGAAAACTGCCAAATACAGGC-------------------ACGTGTG-TGCAGTTGCAAGTCTCTACAATTGACC---------CATTTCTA--TCCCTTATTTTTCTAGCAAGTTGTTGCATAAA------GAAACAAAT
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   632869 183 -  4500979 TACCA-CAATCAatacaaa--agttc----a----aaacaacaga-----------tatctcaa--aaactttctttt----------ttttcccaaa-----------------------------a--tgttAGTACT-----AC---------GCAGGAGCTGCCAACAACACGCATCTTCATACTGCGTAGATATGTGTG-TGCAGTTGCAA-TCCTtagaatagatt---------tttttttcgtttcctcatttc-------------------at------gaaataaat
i caeRem4.Crem_Contig0  I 96 C 0
s caeSp111.Scaffold630  5685244 199 + 20921866 ------TATTTAGTGGGGA--AATTC----G----AATGTTTTCGAAGGTTCAGTTTTCCATAA-CAAATTTTATTCC-----GTtttccttccaaaa-----------------------------aatttttagtagT-----AC---------GCACGAGCTGCCAACAACAGGCATCTC-AAATTGCGT----ATGTGTGATGGAGTTGCaa-tcctggaaaaaaaac---------gtatTTTCGTTTCCTCATCtg-------------------aaaagtggaagaaaaac
i caeSp111.Scaffold630  I 17 C 0
s caePb3.Scfld02_0      1934145 195 +  4147112 ------TATTCAGAAAGAACTCCTTG----A----AAGAGGTTCAAGCCTCCAGGTTTTCATAA-CAAATtgtatttccttttttttttcttccaaaa-----------------------------a--ttttagtagT-----AC---------GCACGAGCTGCCAACAACAGGCATTTTGAAATTGCGT----ATGAGTG-TGCAGTTGCAA-ATCCAGGAATAGA-----------GCATTCTCGTTTCcttttatg-------------------a-------aataaaaac
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194   47680 240 +   823664 ---caTTAATAGTCATAAA--AATTC----AGAATAGACAATTTAGAGCTATA---TTTCGCTTGCCAACCGGACCACCTCTTTTTTATCTTTCGcaataaaacagaaaaatggtCCAATATTTTGCA--TTTTAGCAGCTCGCAAC---------ACAAAAGCTGCCATAAACAGATCTTTT-AAATTGCGTAG--ATAGTAG-CGgtgctgcaa-----aaaaaaagaataaaaaagaatAATTCCCATTTccttgttga-------------------a-------aaaaaagac
i caeJap4.Scaffold18194 I 33 I 27

a score=4396.000000
s ce10.chrX             3528773 20 + 17718866 CAAAAGAAAA------------GTTAAATTTT
s cb4.chrX              8655095 29 + 21540570 TATGACGAATTTcctcaatttgtttt---ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   633052 17 -  4500979 tatgaCGAAT------------GTTG---TTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685443 17 + 20921866 CATGACgaat------------gtta---ttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1934340 17 +  4147112 catGACGAAT------------GTTA---TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   47920 27 +   823664 I

a score=137828.000000
s ce10.chrX             3528793 126 + 17718866 TT--CAGCATGCGATGAGCGATTCCTCGCAACACCTACGGCTTGCGCTGACGGTCACACATCTGCTGCTCGTCGCTTTGGGATCCGTCAACCTCATCATTATTCTGTTAATTATCACAAGACCGTAAG
s cb4.chrX              8655124 126 + 21540570 tt--cagcatgcGATGAGCGACTCTTCGAAGCACTTACGTCTTGCGTTGACGGTCACGCACCTTCTGCTCGTTGCTTTGGGATCTGTCAACCTGATAGTCATTTATCTAATCATTAAAAGACCGTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   633069 126 -  4500979 TT--CAGCATGCGATGAGCGACTCTTCGCAACACTTACGTCTTGCGTTGACGGTCACGCATCTTCTGCTCGTCGCCTTGGGATCTGTCAACCTGATAGTCATTCTTCTCATTATCACAAGACCGTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685460 126 + 20921866 tt--cagcatGCGATGAGCGATTCTTCGCAACATCTCCGTCTTGCGTTGACGGTCACGCATCTGTTGCTCGTCGCCTTGGGATCCGTCAACCTGATAGTCATTCTTCTCATTATCACAAGACCGtaag
i caeSp111.Scaffold630  C 0 I 76
s caePb3.Scfld02_0      1934357 128 +  4147112 TTTACAGCATGCGATGAGCGATTCTTCGCAACATCTACGTCTTGCGTTGACGGTCACGCACCTCTTACTTGTTTGTTTGGGAGCTGTCAACCTGGTAGTCATTCTTTTAATTATCACAAGACCGTAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   47947 126 +   823664 tt--cagcaTGCGATGAGCGACTCTTCGCAACATTTGCGTCTTGCTCTGACGGTCACCCACCTTCTGCTGGTCGCCTTGGGATCCGTCAACCTCATAGTTATACTTTTAATTATCACAAGACCGTGAG
i caeJap4.Scaffold18194 I 27 C 0

a score=910.000000
s ce10.chrX             3528919 1 + 17718866 T
s cb4.chrX              8655250 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   633195 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1934485 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 102
s caeJap4.Scaffold18194   48073 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5685586 76 + 20921866 I

a score=546.000000
s ce10.chrX             3528920 1 + 17718866 T
s cb4.chrX              8655251 1 + 21540570 T
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig0   633196 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   48074 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1934486 102 +  4147112 I
e caeSp111.Scaffold630  5685586 76 + 20921866 I

a score=-2454.000000
s ce10.chrX             3528921 25 + 17718866 GGATAACCAG-----AAACCTTAATTTTCA
s caeRem4.Crem_Contig0   633197  5 -  4500979 GAAAA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   48075 25 +   823664 -----ATTCACTTTTgcactttaattttca
i caeJap4.Scaffold18194 C 0 I 10
e caePb3.Scfld02_0      1934486 102 +  4147112 I
e cb4.chrX              8655252 44 + 21540570 I
e caeSp111.Scaffold630  5685586 76 + 20921866 I

a score=-4058.000000
s ce10.chrX             3528946 426 + 17718866 TCGTGATGATGATAATGTAGCCTTTTTCTGCTGCTCAGATTTATTTAAATTTCTTATTGTTAAAATTTAAGGTTCTTGTGTGGTAGATCTACCCCAAAATG--TTTTGCAGTGAATAAAATTCAAAACGGTCACCACGGAAAAAAATAACCATTCTAATAGTATTTTTATTTATAGGCTTATGAATTATTTTTCCTAATTCACGTTTTATTATTTAAAAACTGAAAACATGTTGGGATGCAGCTAATACACAGCTAATACCAAATTTAGAAACTAACTTGAAAAATGACTAGCAAAAATAAAAAATTTGCTAATCAACAAAGTAGAACATTCTAATCCTAAAAATCTCAAAATAAATTTTTCCGAAAATAATAGAAACTGTTTCAAAAAAAAGCAAAACAATTTAGATTTAAAAATAAGTGCAAATAC
s caeRem4.Crem_Contig0   633202 209 -  4500979 ---------------------CTTGTTGTG----------TGAGTTGAATTGTTTACTGACAACATTCATGGAT----------------------AAATGGGTTCTGCACTT--TAAAG--caaaacctc----------aaaaacaaTAGTTGAcagaaaatttccattt------------------ttttccatttca------------------------------tggGA-------------------------AATCTATGGATTTCCTGGGAAA--------------TAGTAAATCTGTTA-----------------CTGCTATCCATGAAATCTAAGTACAAATT-----------------AGCCGTGTT-------------------------------TGtatgaaaatac
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1934486 102 +  4147112 I
e caeJap4.Scaffold18194   48100  10 +   823664 I
e cb4.chrX              8655252  44 + 21540570 I
e caeSp111.Scaffold630  5685586  76 + 20921866 I

a score=-1677.000000
s ce10.chrX             3529372 37 + 17718866 ATTTAAACCACAAGTACTATTAACTACAATCCCCTTT
s cb4.chrX              8655296 25 + 21540570 ATGCAAACCAAAAATCCCATgcac------------t
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   633411 12 -  4500979 ---------tgaaat----tgaCC------------T
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1934486 102 +  4147112 I
e caeJap4.Scaffold18194   48100 10 +   823664 I
e caeSp111.Scaffold630  5685586 76 + 20921866 I

a score=910.000000
s ce10.chrX             3529409 1 + 17718866 T
s cb4.chrX              8655321 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   633423 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685662 1 + 20921866 T
i caeSp111.Scaffold630  I 76 C 0
s caePb3.Scfld02_0      1934588 1 +  4147112 T
i caePb3.Scfld02_0      I 102 C 0
e caeJap4.Scaffold18194   48100 10 +   823664 I

a score=644169.000000
s ce10.chrX             3529410 990 + 17718866  
s cb4.chrX              8655322 923 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   633424 957 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5685663 918 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1934589 916 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   48110 950 +   823664  
i caeJap4.Scaffold18194 I 10 I 37

a score=-2596.000000
s ce10.chrX             3530400 6 + 17718866 TGATGA-
s cb4.chrX              8656245 7 + 21540570 tttagaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   634381 7 -  4500979 TCAAGAA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5686581 6 + 20921866 tattga-
i caeSp111.Scaffold630  C 0 I 27
s caePb3.Scfld02_0      1935505 6 +  4147112 cacgaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   49060 37 +   823664 I

a score=-3.000000
s ce10.chrX             3530406  7 + 17718866 TTTTTA---T
s cb4.chrX              8656252  7 + 21540570 tttcaa---t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   634390 10 -  4500979 CTCCAAAGTT
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      1935511  7 +  4147112 tttcaa---a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   49060 37 +   823664 I
e caeSp111.Scaffold630  5686587 27 + 20921866 I

a score=-10792.000000
s ce10.chrX             3530413 23 + 17718866 -----------------------------------------------------------------ATAATCTTCTTTATTACAATTTG
s cb4.chrX              8656259 14 + 21540570 -----------------------------------------------------------------atGAAGTTAATTTT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   634400 14 -  4500979 -----------------------------------------------------------------ACCAACTTATCTTT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1935518 13 +  4147112 -----------------------------------------------------------------ataaattcatttt----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   49097 77 +   823664 ACAGTTTATCTTATTAAAACACTCGTTCAACTAGGGCATACGCATGTTAAATGATCGCTGAACATCTCACCACATTT-----------
i caeJap4.Scaffold18194 I 37 C 0
e caeSp111.Scaffold630  5686587 27 + 20921866 I

a score=217040.000000
s ce10.chrX             3530436 373 + 17718866 TAGGTCCCCATTCTGGTTGTTCAATTTGTTTTCTGCCATCTTCCGGGTTCGAATAACAACACAATTAATGAGAATCATAGTCAACATCATTCACCTCTTCCCTTATGTGAACTGTGCACTTAATCCAGTATTATATGCATACCGAGCAGAAAACTTCCGGACCGCATTCAAATCACTGCTCTTCTGGAGCCGACGGTCAGTTTCTAGCAAATTGTGAGTACGAAAACTAC------------------------------------------AACAATACATTG-TT---------------CTTCCTGT-------------------------------------TATACTTTTCACTGACCAT-CAAAATATGTACGCGAGTGTGAAT-----------TTGTGAGCATGAAGCAGAGTGACAATTAG-CTGAATGTATACGTGGGTTCTCTCACGCTTTCCGATTG--TCAAGCAATTA
s cb4.chrX              8656273 324 + 21540570 TAGGTCTCCATTCTGGCTGTTCAATTTATTCTCTGCAATTTTCCGTGTTCGGATAACAACTCTATTGATGAGAATCATTGTAAATATCATTCATTTGTTCCCCTATGTCAACTGTGCTCTTAATCCGGTTCTCTATGCGTATCGAGCTGAAAACTTTCGCACTGCTTTCAAAAGTCTTCTATTCTGGAGTCGACGGTCAGTTTCT---AAACTGTGAGT------ACTT-----------------------------------------------------------------------------------------------------------TCAACGAAAAGTACACTTTTCAAAGAT----CGAA---------TGAGTGTGTA------------GTAGTTGTTTAAAG--------CAATT-------ATGTGTACGTGGGTTCTCACAGGCTCTTC-CCCA--CAAAGTAATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   634414 376 -  4500979 CAGGTCTCCATTCTGGTTGTTCAACTTGTTTTCTGCCATTTTCCGTGTTCGGATCACAACTCAATTGATGAGAATCATCGTCAACATCATTCATCTTTTCCCATATGTCAACTGTGCACTCAATCCTGTTTTGTATGCATATCGTGCTGAAAACTTCCGAACTGCATTCAAATCTCTTCTATTCTGGAGTCGACGGTCAGTTTCTTGCAAATTGTGAGT------ACTTC------------------------------------------TACAACACAATG-TTATGTTAG----------TTCTGTTCTCTAAAATTTCTATCTAG---TTCTCACTTAAAAGTACACTTTTCAAAGACCAG-CGAA---------TGAGTGT---------------ACATGTATGTAGAG--------CAATTAT-CGGAATGTATACGAGGTCTCTCTCAA---------TTG--ACAAGTAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5686614 392 + 20921866 taggTCACCATTCTGGttgttcaatttgttttctgcCATTTTCCGTGTTCGAATTACCACTCAATTGATGAGAATCATTGTCAACATCATTCATCTCTTTCCTTATGTCAACTGTGCTCTGAACCCTGTTCTCTACGCGTATAGAGCTGAAAACTTCCGGACAGCATtcaaatctcttcttttctggaGCCGACGGTCAGTTTCTAGCAAATTGTGAGT------ACTTC------------------------------------------TACAGAACACTG-TCATGTtta--------ctttttgttctttagATTAACTATCTAGATTCTTTCAC-AAAAAGTACACTTTTCAAAGACCAT-CGAA---------TGAGTGTACATGTAACATATGTATGTGAGTGTGAAG--------CAATTATACG-------------TGGTTTCACACACTTCCCGATTG--ACAAGTAATTA
i caeSp111.Scaffold630  I 27 C 0
s caePb3.Scfld02_0      1935531 401 +  4147112 taggtCACCATTCTGGCTGTTCAACTTGTTTTCTGCTATATTCCGTCCCCGGATAACAACTCAATTGATGAGAATTATTGTCAACATCATTCATCTCTTCCCATATGTAAACTGCGCACTCAATCCTGTACTTTATGCTTACCGAGCTGAAAACTTCCGGACTGCAttcaaatcgatatttttctgGACCCGACGGTCAGTTTCTAACAAATTGTGAGT------ACTTC------------------------------------------TACAACACAATG-TGATGTGCACTTTCACCCTTTCTGTTCTCTAGAAT-ACTTTCTGCCTAGTTTCACTGAAAAGTACAGCTTTCAAAGACCGA-C-AA---------TGAGTGTAC-------------ATATGTGTGAGAAG--------TAATTATCCGGAATGAATACTTCTTCTCTCACGGACTTCCCGATTGACACAAGTAATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   49174 380 +   823664 CAGGTCTCCTTTCTGGTTATTCAACCTGTTCTCAGCAATCTTTCGAGTTCGGATTACCACACAACTCATGAGAATTGTAGTCAACATAATCCATCTGTTCCCATATGTCAACTGTGCACTGAACCCAGTGTTATACGCATACAGAGCGGAAAACTTCCGGACAGCATTCAAATCTTTGCTCTTCTGGAGTCGACGGTCAGTTTCTAGCAAATTGTGAGT------GTTTTGCTGTTTCTGGTTTAGCTGTGATAAAACCGAAAATATAAATGAACAAAACAATGATCGCGTTTA--------------------------------------------------AAATGCACTTTTCAAATACGatgtgta---------tgtgtgt---------------gagtGTGAGCAAAA--------CAATTAT-----------ACGTGGATACTCAC--GCTTTCTGATTG--ACAAGTAATTG
i caeJap4.Scaffold18194 C 0 I 35

a score=-1201.000000
s ce10.chrX             3530809 26 + 17718866 AGAACTGAGTCGGTGTT-GAGAA------------TCTT
s cb4.chrX              8656597 39 + 21540570 GGTATTACGTTGATCTGAAAGAAAATCCCAGGCACCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   634790 33 -  4500979 AGCATCGCGTTG------AAAGAACTAAtagtttcttgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687006 38 + 20921866 AGAATTGAGTCGGTGTC-AGAGACCTAGtcgtttctcgt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1935932 29 +  4147112 GGAATTGAGCCGGTGTT-GAGTG---------TTGTtgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   49554 35 +   823664 I

a score=197020.000000
s ce10.chrX             3530835 322 + 17718866 -TTTCCCTAATTGAATTATTG-TT---GTGTAGGCGTTTT------ATAATTACTAATGTATCAATGATGAATA-GTCTTTTTTAGAAACCGACCACTTCCCTTACCGGAAGATGTGCGGAGCACGTCGGCTAGTACGTACTATAGGAACAGCAGCAAGTGAGTCCATCAAAA--------CAAG----TATT--TTTCGCAAAAGCTTATTTATCATTGCTTATTTTCAGCTTGGACTGTTTGAAATCCTCGTTGCCCATAAAGTCAACAATGGAGCCAGCATCCGTGTACCAACCAGAAGAAGAAAGTCCAGTGGACTCTACTGAAAACTTGGAAATGGAGAGGTA
s cb4.chrX              8656636 306 + 21540570 -TTTGTTTC-TATAA-TATTG-TTCACGTGTAGGAGTTTT------ATAATT----ATATGTGTATCCTCGATC-----TCTTCAGGAACCGACCACTTCCAGTTCCGGACGATATTCGAAGCGCGTCGGCAAGCACGTACTATAGGAACAGCAGCAAGTGAGtagaaaaca-----------------caat--ttttg----aacttatggaaatgttttctttttaagTTTGGATGGTTTGAAATCATCATTGCCCATTAAATCACCAATGGAAGCTCCGTCAGTATACCAACCGGAGGAAGAAAGTCCACTCGACTCCACAGAGAGGCTTGAGATGGAGAGGtg
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   634823 311 -  4500979 -tttccttc-tCAAGTTATTG-CT-ATGTGTAGGCGTGTT------ATAATT----ATGTACCAATGATGAATC---GTTTTTCAGGAACCGACCACTTCCGATGCCAGAAGACATCCGAAGCACGTCGGCAAGCACGTACTATAGGAACAGCAGCAAGTGAGTCCAAAATAA--------CAAC----AAGT--TCTTG----AACTGACgcgg--tttcttttttttagtttggaTGGATTGAAACCTTCTTTGCCAATCAAATCACCAATTGAAGCCGCATCCGTGTACCAACCAGAAGAAGAGAGTCCTGTggattcttcagaaaaaatagagatggAGAAGTA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5687044 313 + 20921866 -tttctttc---gagTTATTGTTT-ATGTGTAGGCGTTTC------ATAATT----AAGTATCACTGATGAATC---TCTATTCAGGAACCGACCACTTCCGATGCCAGAAGACATTCGAAGCACGTCTGCGAGCACGTACTATAGGAACAGCAGCAAGTGAGTCCACAAAAA--------CAACGA--TAATCCTTTTC----ACATGACGTAAAAATG---CTTTTCAGTTTGGACGGTTTGAAATCGTCGCTGCCAATCAAATCGCCAATGGAAGCACCTTCTGTATATCaaccagaagaagaaagtccAGTTGATTCggcagaaaaaatggagatggAAAGGTA
i caeSp111.Scaffold630  C 0 I 34
s caePb3.Scfld02_0      1935961 306 +  4147112 -attatttt---gaattattg-tt-GTGAGTAGGCGTTTT------ATAATT----GCGTATCAATGATGAATTCTATATATTCAGGAACCGGCCTCTTCCGATGCCAGAGGATATTCGAAGCACGTCGGCTAGCACGTACTACAGGAACAGCAGCAAGTAAgtacaacaaaa--------caaaaacgtgAT------------CATGAcgtatca------tttttcagtttggacGGCTTAAAAAATTCATTGCCACTAAAATCTCCAATTGAAGCACCATCAGTGTACCAGCCAGAGGAGGAAAGTCCAGTtgattccaatgaaaaaattgagatggaGAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   49589 326 +   823664 TTTTCTTTT---AAATTGATG-TT---GTGTAGGCGTTTTGTATGAATAATT----AGGTTTAAAAGATGAATT-----TTTCCAGGAACCAACCACTTCCCATGCCAGAAGACGCCCGGAGCACGTCGGCTAGCACATATTATCGGAACAGCAGCAAGTGAGTGGTTTACAAATCGTTTTCAATAAATCAAT--TATTA----AATTAATGATTaactattatttttcagtCTGGATGGTCTAAAATTGCAACACACTATCAAATCACCAATGGAAGCCACTTCTGTATATCTACCAGAAGAAGAAAGTCCAGTTGattcaaatgaaaaattggagaTGGAAAGGTA
i caeJap4.Scaffold18194 I 35 C 0

a score=-96.000000
s ce10.chrX             3531157 7 + 17718866 CTTGAAA-
s cb4.chrX              8656943 7 + 21540570 cttcaaa-
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0      1936267 7 +  4147112 ATAGAAA-
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18194   49915 7 +   823664 -CCGAAAC
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5687357 34 + 20921866 I
e caeRem4.Crem_Contig0   635134 1 -  4500979 I

a score=819.000000
s ce10.chrX             3531164 3 + 17718866 ATT
s cb4.chrX              8656950 3 + 21540570 att
i cb4.chrX              C 0 I 32
s caeJap4.Scaffold18194   49922 3 +   823664 ATT
i caeJap4.Scaffold18194 C 0 I 23
e caePb3.Scfld02_0      1936274 31 +  4147112 I
e caeSp111.Scaffold630  5687357 34 + 20921866 I
e caeRem4.Crem_Contig0   635134 1 -  4500979 I

a score=-3009.000000
s ce10.chrX             3531167 186 + 17718866 AATTAGTTTAGTTGATTATCAAAGTGAAGCTGAAAATTTTTATACTGAAATGGGTGACCTGAAAAATATTGAAAAGATAACAAATTAAACGGTCAGTGAAAATTTCAAAACACTATTTCATTGCTAAAAACTGTGCCCAGCACACCGTTATTAAGTACACATGAATGTGTTTTAGTAATTTATGTA
s caeRem4.Crem_Contig0   635135  42 -  4500979 -----GTCTA------TATAAAAGTG-------------------------------------------TGATAAAAGAA------------------------------------------------------------------------------------------TCTAACAATTTAcgta
i caeRem4.Crem_Contig0  I 1 C 0
e caePb3.Scfld02_0      1936274  31 +  4147112 I
e caeJap4.Scaffold18194   49925  23 +   823664 I
e cb4.chrX              8656953  32 + 21540570 I
e caeSp111.Scaffold630  5687357  34 + 20921866 I

a score=0.000000
s ce10.chrX             3531353 103 + 17718866 AAAAGCCCATTTGAAAATTGAAAATATCACTGCTGCTGTAGTGGTGTATGTCCAAACTAAGAAAACGTTTCCAATTTTCACTTTCATAGTTTGTTTCCATCTT
e caePb3.Scfld02_0      1936274  31 +  4147112 I
e caeJap4.Scaffold18194   49925  23 +   823664 I
e cb4.chrX              8656953  32 + 21540570 I
e caeSp111.Scaffold630  5687357  34 + 20921866 I
e caeRem4.Crem_Contig0   635177   0 -  4500979 C

a score=-1420.000000
s ce10.chrX             3531456 69 + 17718866 TTCAATAAGAAAATCTCAAATAAACACTCTTAGAATCAAAATATATAAATTTTGTGAACATGCCTTATC
s caeRem4.Crem_Contig0   635177 13 -  4500979 ttccagaaaaaaa--------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1936274 31 +  4147112 I
e caeJap4.Scaffold18194   49925 23 +   823664 I
e cb4.chrX              8656953 32 + 21540570 I
e caeSp111.Scaffold630  5687357 34 + 20921866 I

a score=0.000000
s ce10.chrX             3531525 5 + 17718866 TGATA
e caePb3.Scfld02_0      1936274 31 +  4147112 I
e caeJap4.Scaffold18194   49925 23 +   823664 I
e cb4.chrX              8656953 32 + 21540570 I
e caeSp111.Scaffold630  5687357 34 + 20921866 I
e caeRem4.Crem_Contig0   635190 0 -  4500979 C

a score=128.000000
s ce10.chrX             3531530 5 + 17718866 TCTGA
s caeJap4.Scaffold18194   49948 5 +   823664 Tttgt
i caeJap4.Scaffold18194 I 23 C 0
e caePb3.Scfld02_0      1936274 31 +  4147112 I
e cb4.chrX              8656953 32 + 21540570 I
e caeSp111.Scaffold630  5687357 34 + 20921866 I
e caeRem4.Crem_Contig0   635190 0 -  4500979 C

a score=153008.000000
s ce10.chrX             3531535 390 + 17718866 TTACAGAAAAAAAGCGGAACTTCAAGCCTGGCGGCCTTATGATGGAACTAACTGTGAAGTATTAGAAGTTCAATACGATCATCATAAATGCTCCGCCAGAAGTATCCTTCTCCCAGCTGTCACAGTGGACGAAGGAACAAAATTATGAT---GATGAAAA---CTTTGAAAATAAATTATAGGAACGTGTC-GCATTG--TCTCTT-----GCACACTTCCGGGTA-CGCATCTTTCCTCCCGATGAGAAATCAA-------------ATATTGTATTTGAAGTTGCATTTGTG--------------------TTTC----------------TTTTCTTTTCTTTCATTTGTATCGATAAATTTTAATTTATTATACGTTCCCTTAA--------------AAATAATCTCAAATAGTTGGTTATGTACATGTGTG--------------------AGGTTTAGTGCA----GAAGAGAAGATGAATCAC
s cb4.chrX              8656985 417 + 21540570 ttccaggaaaaaagcAGAGCTCCAGGCTTGGAGACCATATGATGGAACTAACTGTGAAGTGCTCGAAGTTCAGTACGACCACCATAAATGCTCGGCTAGAAGCATTATCCTTCCAGCTGTCACCATCGAGGAGGGCACAAAAttgtgatttcaa--aaaa---tcctgatAATTTC-TATAGGAACGTGTC-GCATGGTTTCTCTC-GTTTGCACACTTCCGggta-tttttttcctt-cccgTTGAACAATAGTCATTAAACACTTAAAATTGTATTCGATGTTGCATTTCTCTAAAATTATTATTAATTTAACACT----------------GTCTATTTCTT---TAATGTAAGAATGAA--TTAATTTATTG-------CTTT-----TTGTTGAATG-ATACAATCTC--AAAATTGATTATTTACAGGTGTA--------------------GATTTGAG--------GGAGAAGAAA-GAGTAAC
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   635190 376 -  4500979 -------------gctgcACTTCAAGCATGGAGACCATATGATGGAACAAATTGTGAAGTACTGGAAGTCCAATACGACCATCATAAATGTTCAGCTAGAAGCATCCTCCTTCCAGCTGTTACTATGGAAGAAGGTACAAAGTTGTGAT---AA--GAAA-----CTGATAATAAA-TGTAGGAACGTGTC-GCATTG--TCTCTC-ATTTGCACACTTCCGGGTA-TCTGCTTTTTCACCCGATAAAAAAGAAT------ACGCCT-AAATTGTATTCAATGTTgcatttgta----------------------------------------------ttttt---tgtggtACCAATAAA-CTTAATTTATTG-------Ctttaa-aattgtgaaacacACAAAATCTC--ATGATTAGATATGTACATGTCAA--------------------GAGTTGAGtatagagaaaagaagaaatgattcAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687391 406 + 20921866 -tttagaaaaaaagcggaACTACAAGCATGGAGACCTTACGATGGAACAAACTGTGAAGTACTTGAAGTTCAATATGATCATCATAAATGCTCAGCTCGAAGCATTCTCCTCCCAGCAGTAACTATCGATGAAGGAACAAAGTTGTGAT---AG--AA------ATTAACAATGAA-AGTAGGAACGTGTC-GCATTG--TCTCTCAATTTGCACACTTCCGggtattttgatttttctcccGTTG-AAAACAGA----------CA-AAATTGTATTCGATGTTGCATTTGCA--------------------Tatg----------------ttcaattttct--aattattatcaatgaa-attaatttattg-------CTTGAACACATGT-------GAATAATGTT--ATAATTGGTTATATACATGCTGAAAGAAAAGGTTTGATGATTTCAATCGAATAATGTGAAGGGAGAGGG-GAGT--C
i caeSp111.Scaffold630  I 34 C 0
s caePb3.Scfld02_0      1936305 390 +  4147112 tttcaggaaaaaagcaGAACTCCAAGCCTGGAGACCATATGATGGAACAAATTGTGAGGTACTCGAAGTTCAATACGATCATCATAAGTGTTCAGCCAGAAGTATTCTCCTTCCAGCAGTTACCATTGAAGAAGGAACAAAGTTGTGAT---AA--CAAA---TATTAATAATGAA-TGTAGGAACGTGTC-GCATTG--TCTCTCTTTTTGCACACTTCCGGGTA-TCTGATTTTTCTCccgttgaaaaacaaa----agaaacca-aaattgTATTCGATGTtgcatttgca--------------------tttt----------------ttttctttcat---cttaTTATTAATGAA-TTTAATTTATTG-------CTTTAAAAACTGT-------AAATCTCAAG--TTGATAGATTATGTACATATTGA-------------ATATTCTCGATTAGATCCAGTGAAA---------------C
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold18194   49953 341 +   823664 ttccagaaaaaaagcaGAGCTTCAAGCTTGGAGACCCTATGACGGCACGAACTGTGAAGTACTGGAAGTTCAGTACGATCATCATAAATGTTCGGCCAGGAGTATCCTTCTTCCAGCAGTAACTATGGACGAAGGAACCAAATTGTGAT---AA--TTTTTCTTCTTGAATACGAT-TGTAGGTACGCATCAAAATTT--GCTCGC----TAAAAATTTTcgggta-ttta-tttttcttccgaTGAAGTCTTGT-----CGCAAAA-GCATAACATTGACCGCCGCCCCTCCC--------------------CTTTTCCTCTCACTGTCCCATTTTGTCTTTT---TCAACCGTTAATGAA-TTTAATTGTTTA-------TT------------------AAACCAC----------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 I 130

a score=1147.000000
s ce10.chrX             3531925 16 + 17718866 ATGTGACCTT---GCGGAC
s cb4.chrX              8657402  9 + 21540570 ATGTGACTT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635566 17 -  4500979 ATGTGACTTGT--GCCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687797 19 + 20921866 ATGTGACTTGCGAGTCAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1936695 11 +  4147112 ATGTGACTTTC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   50294 130 +   823664 I

a score=58927.000000
s ce10.chrX             3531941 63 + 17718866 TTGTTGCAATTTGATTAGGATTTGCAACAAAGTGAATTGGGGGAAGCAGAGTCCTGCAATTTG
s cb4.chrX              8657411 50 + 21540570 -------------TTTAGGCTTTGCAGCAAAGTGAGTTTGGAGAAGCAGAATCCTGCAATTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635583 63 -  4500979 TTGTTGTAATTTGGTTAGGGTTTGCAGCAGAGTGAGTTTGGGGAAGCAGAATCCTGCAATTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687816 63 + 20921866 TTGTTGTAATTTGGTTAAGATTTGCAGCAAAGCGAGTTTGGGGAAGCAGAATCCTGCAATTAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1936706 63 +  4147112 CGGCTTTAAATTGGTTAGCCCTTGCAGCAGAGTGAGTTTGGGGAAGCAGAATCCTGcaatcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   50424 63 +   823664 TTGTTGTAATTCGCTTAGGCTTTACAGCAGAGCGAGTTCGGGGACGCAGAATCCTGCAATTTG
i caeJap4.Scaffold18194 I 130 C 0

a score=-4204.000000
s ce10.chrX             3532004 31 + 17718866 -----CTTGAATAATTTATCTCAAAAAAGCAACGAT----
s cb4.chrX              8657461 37 + 21540570 GAGATTatacaaaattca--gaatgagACAAGCAGAAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635646 36 -  4500979 ATGA-Tataaagaattca--aaaagaaagaagcaaTAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687879 15 + 20921866 AGca-cataaaaaatt------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1936769 37 +  4147112 ataa-aatgaataattcg--ggagggaagaaaaaaaaggt
i caePb3.Scfld02_0      C 0 I 178
e caeJap4.Scaffold18194   50487  0 +   823664 C

a score=-34776.000000
s ce10.chrX             3532035 153 + 17718866 CAAAACTT----TTTGGATCA---------------------------ATTTTTGTT----------------------------------TCTTGTAAGAA---------ATGGGAATATATTTTGAAGTTGGACGGACAACCTTTATTTTACTTAAGTACTCAAAACATTTTGC------CGATTGACTAAAATTTTTGGGCTCAGTAACCTGGGAAGGAACTAACTATTT---------------------------------------------------------------------
s cb4.chrX              8657498 264 + 21540570 -----CAA----GTTGTAGGAAGTAGAGTGCAAGATTTACAACCTAGCATTTGGATCAGTGCCAAAACACATCCATCCAGAAAGAAggggattttagaaaaa--------------------attatgggTCAAtcttgaatctttttttttcgttccttgTGTGAAATATCACAAAGTATTCAATTGTCAAAACGTTC--TTCACGATTTACTGATA-------AACGATTTTAGACATGTcttacagggaccgagataaatttggtcaaagttgacgattagAGATTTCGCTAGAGGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635682  40 -  4500979 -----CAA----GTCAAATGA------------------------------TTGACC----------------------------------TTTTAGAAAAA--------------------------GGTT---------------------------------------------------------------------------------------------------------------------GCACCGA----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5687894 142 + 20921866 caaaacaattgtGTTAAACGT------------------------------GTGACC----------------------------------TTTTTGAAAGAGCatgaaaaagtacaaaaagaTTAGAAGTTAGT----------------------------GGAAATGTTATAAG-----CAGGGATCAAAAACTGCAGTTTTTAATACTCCATAA-------GCCCAGTTCGCACAACTTCTC--------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1936806 178 +  4147112 I
e caeJap4.Scaffold18194   50487   0 +   823664 C

a score=-19186.000000
s ce10.chrX             3532188 65 + 17718866 ATAATTGGAAAAAAA---------------------GTGTATTATATATTATT-----------------TTCAAAAAGCACTATAAGCTCAAACTTC----TTCAA
s cb4.chrX              8657762 62 + 21540570 --------TTCAATCTCAATAAGATGCCCTGTTACCGTAAAC--------ATG-----------------TATTAGGAG------ggtccctaact------tttaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635722 19 -  4500979 ------------------------------------GTACAG--------ATA-----------------GATTA---------------CTAAC------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5688036 55 + 20921866 -----TGATGCAATC---------------------TTATAATATATTTTATA-----------------GTTTGAGAGTA----GGGACtgaactt-----tttaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1936984 80 +  4147112 aaaattggagaaa-----------------------gtACAGGATGTTTTATAAATGAGTTATTTCTAGTAATCGAGAGGG----ATgctccaattttcaactttag
i caePb3.Scfld02_0      I 178 C 0
e caeJap4.Scaffold18194   50487  0 +   823664 C

a score=169751.000000
s ce10.chrX             3532253 422 + 17718866  
s cb4.chrX              8657824 551 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   635741 359 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5688091 420 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1937064 512 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   50487 400 +   823664  
i caeJap4.Scaffold18194 C 0 I 58

a score=-10890.000000
s ce10.chrX             3532675 41 + 17718866 GGGAATTAAATGTTAATCGTGAACACTTGCTGCCATATTTG
s cb4.chrX              8658375 38 + 21540570 GGAACAGAGgggatttttctagttgat-aCTGT--TCTTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   636100 31 -  4500979 ggaatattgaaagaaattctgagagat----------ttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5688511 32 + 20921866 Ggatcagaaaatttga-taGTGTTGTT--------TTCCGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1937576 39 +  4147112 CGGTGATTAGTTTTGATTAGAATTTTC-actaa-gttttga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   50887 58 +   823664 I

a score=222596.000000
s ce10.chrX             3532716 279 + 17718866 CAACTCACATGCTTTGAAAACAAGAACGGAGAAAAGAAGAAAAGTCGAAAGTGTTCGAGTCATGGTGGTCGTC-GTATGCCTTCTCC-AACTTGCCTTCCAGCCATTTTTATAGAGCTTCTATTTGCGCAGCCCCACGAACATGCGAA---AGGAGCACAAAAAA-GCCTGGAC----ACATTTTTTGACGTTGTGTGGATTCATCTTC----------CACTTTGTTTACTCAC--GTGTATCAAATCTGATTTT-------TT-CTGTTGTTGCGTGTTCTTGCC---------ATTTTATTTGTTGACC-TTCTCT----
s cb4.chrX              8658413 293 + 21540570 AAACTTACATGCTTTGATGATAAGAGCGAAGAAAAG---AACGGAAGGAAGGGTTCGAGTCATGGTGGTCGTTAGAATGCCAT-TCC-AACTTGCCATCGCGCCATTTTTATAGAACCACTGTTTGCGCAG-GCTACGAACATGGAAAACGAAGAGCACAAAAAA-GGCtggac----acattttttgacGTTTTGTGGATACATCTTC----------CACTTTGTTTACTCACGTGTGTAtcaaatctgatttttctcctctt-ctgtTGTTGCGTGTTCCCCACCAGGCAAGCTTTTTATTTGTTGACCTTT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   636131 271 -  4500979 aaacttacatGTTTTCGAAATGAGAACAAAGAGAAG---AACTGTTAGAAGAGTTCGAGTCATGGTGGTCGTC-GAATGCCAT-TAC-AACTTGCCATCCGTTCACTTTTATAGAGCTTCTATTTGCGCAG-GCCACGAACATTGAAA---AGGAGCACAAAAAA-CCCTGGAC----ACATTTTTTGACGCTTTGTGGATTCATCTTC----------CACTTTGTTTACTCAC--GTGTATCAtatctgatttt-------tt-ctgttgttgCGTGTTCCTGcc--------ttttttatttgttgaCC-TT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5688543 273 + 20921866 TAACTCACATGCTTTTGAgacaagaataaaaagaaggaaaactgaaatgagAGTTCGAGTCATGGTGGTCGTC-TTATGCCAT-TTC-AACTTGCCATCCAACCACTTTTATATAGCTTATATTTGCGCAG-GCCACGAACATTGGAA---AGGAGCACAAAAAAGGCCTggac----acattttttgacgCTTTGTggattcatcttt------------ttttgtttgttcaC--GTGtatcaattttgatttc-------tcacTGTTGTTGCGTGTTCCTGCC---------ATTCTATTTGTTGACC-TT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1937615 270 +  4147112 aaacttacacgcctttgaaatgagaacaaaaagaag---aactgtAAGGAGAGTTCGAGTCATGGTGGTCGTC-GAATGCCAT-TCT-AACTTGGCAGTCAGCCATTTTTATAGAGCTGCTATTTGATCAG-GCCACGAACATTGAAA---AGGAGCACAAAAAA-CCCTGGAC----acattttttgacgttttGTGGATTCATCTTC----------CATTCTGTTTACTCAC--GTGTATCAATTCTGATTCT-------TC-CTGTTGTTGCGTGTTCCTGCC---------ATTTTATTTGTTGACC-TT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   50945 284 +   823664 CAACTCACAAACTTTGGAAACGAGAACGAAAAGGAT---AAAGTACTTGA---TTTCAGTCATGGTGGTCGCT--TTTGCCAT-TCCAAACTTGCCATTTTGTCACTTTTATATTACTTTTATTTGCGCAG-GCCACGAACATTGAAA---GCGAGCACAAATAA--CCTGGACACagacattttttgacgttttgtGGATTCAGATTCACCTCGTTCGCACTTTGTTTACTCAC--GTGTATcaaatctgatttt-------ttgctgCTGTTGCGTGTTC-TGCC---------TTTTTATTTGTTGACC-TC----CGCT
i caeJap4.Scaffold18194 I 58 I 2648

a score=29868.000000
s ce10.chrX             3532995 137 + 17718866 CACTCTGAAAAAAGACGTTTTTTATGCTGAAAATGGT-AACTGATAT------------GCTAAAGATAGGA-ATCATCAAAATGTGGACAA--AAGGGACA----GATGATTGAACTCTTAGTTATAATAAACATATTGAAAAATCAACAAAAATA
s cb4.chrX              8658706 144 + 21540570 --TTCCGAATAAAGGAATCTTGAAGTCGAGAATAGGGTGACTGATAG----TTGAA--GGATAGGAATAGAATTTGATCAGAAGTTGGACAG--TGGGGACGTCGTGATGATTGaacatttattc---aaaaagGTTTCTGtaaatcaacaaaaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   636402 137 -  4500979 --TTCCGAATAAGGAAATGTTCAAGTTGGGAGACTGG----TGATAG----GCGAA---GATAGGAATAGAA-CTGAACTGAA-TTGGACGGGAGAGGGACACACTGATGATTGAACTTTTAATC---ATAAACATTggaggaattca--aaaaata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5688816 142 + 20921866 --CtccaaatgaagaaatgttCAAGTATGGAAAAGGT----TGATAG---GAAGGAAGAGATAGAAATAGAA-CTGATCAAAA-TCAAATGT-AGAGGGACGCATTGATGATTGAACTTTCATTT---ATAAacaaattcagaaatcaacaaaaata
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1937885 142 +  4147112 --TTCCGaataaagaatttttcaagctGAGAAAAGGT----GAGTAGTGATGAGAAATGGATGAGAATAGAA-CTGATAAAAT-GGAAAT----AGGGGTCATGTTGATGATTGAACTTTTATTC---ATAAATACTTTGGAAATAtcacaataata
i caePb3.Scfld02_0      C 0 I 3683
e caeJap4.Scaffold18194   51229 2648 +   823664 I

a score=-2018.000000
s ce10.chrX             3533132 7 + 17718866 GGGTGGG-
s cb4.chrX              8658850 7 + 21540570 -atttttg
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   636539 7 -  4500979 -aatttgg
i caeRem4.Crem_Contig0  C 0 I 7212
s caeSp111.Scaffold630  5688958 7 + 20921866 agGTTTC-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I

a score=-26939.000000
s ce10.chrX             3533139 507 + 17718866  
s cb4.chrX              8658858 628 + 21540570  
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5688965 299 + 20921866  
i caeSp111.Scaffold630  C 0 I 42
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeRem4.Crem_Contig0   636546 7212 -  4500979 I

a score=-660.000000
s ce10.chrX             3533646 60 + 17718866 GAATCCAGAAGTTTTCATTTTTTCACAGTAA-AAAATTAATTTTTATGTGAGTTCCGAGGT
s cb4.chrX              8659486 47 + 21540570 gaagtccaTCGTATTTACTTTAACTGAATCGCaaaatcgaacttttt--------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5689264 42 + 20921866 I
e caeRem4.Crem_Contig0   636546 7212 -  4500979 I

a score=-9440.000000
s ce10.chrX             3533706 280 + 17718866 ACCAAAAATAGAAAAAAAAATCTCAATAAATATTTACTCATGGTAAATATTTCGTTTAAAACCTATTATCACCTTCTG----TTTTTTGGGCATAAAACAATAGCGCTT------TCAAAAATTTTGAAGATTTTAATTGAAATTAGCACTTTTTTTTGAAATTTTGAACAGCCAAAAAAGTTGTCCTCCTTAAGTTAAGGATTCAAACCTATATTCAAAAAAAAA-ATGTTTT-------TGGTGAATGTTAAATTTACAAGTCGTGTCATAATTTTGCGGACTTTTTTACTCTTGG
s cb4.chrX              8659533 246 + 21540570 -----caaactaaa---ttatctcgat----------ccttgggaaatatgtca---aaaac---ttgtca---actgatgaaatattggtcgTATTACGATAAAAAttactagttgacaatttttcgatatctttacagtaatcgagat--------aaatgagcgcgaagtt--gaaagttgacttctgttacggtatttttca--ctagttttttgaatgcca-atgtttttaaattttcatgaatgt------------ttacgctgtaattttGTCTATTCTCTAATTATTGG
i cb4.chrX              C 0 I 59
s caeSp111.Scaffold630  5689306 205 + 20921866 Accaagaaaataaaaagggattttggt----------tttttgataat--------------------tcaC--ACTG----CACATTTACTGTTTT----TAAGGTTT--TATTTCACAATTATTCCCCGTTTTTATGCAAGTTTCGACTTTCTTTAAAATCATACCCAAGTCAGGAAACTTGAGAACTTTAATGGACGTATGCA----------TTGGACACAATATGTTTC-------------ACGT------------TCACTTCGTA-----------TATCAAATT-----
i caeSp111.Scaffold630  I 42 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeRem4.Crem_Contig0   636546 7212 -  4500979 I

a score=-96.000000
s ce10.chrX             3533986 48 + 17718866 GCTTTGCCAAGCTTGACCATCTGGCCCAATTAATTAACTCTTAGATTG
s caeSp111.Scaffold630  5689511 18 + 20921866 ---------------GCCATTTGGTTCAA---------------ATTG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e cb4.chrX              8659779 59 + 21540570 I
e caeRem4.Crem_Contig0   636546 7212 -  4500979 I

a score=-5282.000000
s ce10.chrX             3534034 69 + 17718866 AGAAAAATTATTTCATTTTAACCTTTTTC----CTAGTGCGATTGCAAAAAAATCAAAGAA------------AAAACGCATTTA
s cb4.chrX              8659838 66 + 21540570 aaaataatta--------------tctCCCATTCTGGTGCACTTCT---TGTGTCAATCAGTTCATTTCCTGCAAGATTCTCT--
i cb4.chrX              I 59 C 0
s caeSp111.Scaffold630  5689529 22 + 20921866 ------------------------TCTGC----ATGATGC-----------TATCAGTCAG------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeRem4.Crem_Contig0   636546 7212 -  4500979 I

a score=1272.000000
s ce10.chrX             3534103 3 + 17718866 TAT
s cb4.chrX              8659904 3 + 21540570 TAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   643758 3 -  4500979 TAT
i caeRem4.Crem_Contig0  I 7212 C 0
s caeSp111.Scaffold630  5689551 3 + 20921866 TGT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1938027 3683 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I

a score=78316.000000
s ce10.chrX             3534106 576 + 17718866  
s cb4.chrX              8659907 487 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   643761 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5689554 569 + 20921866  
i caeSp111.Scaffold630  C 0 I 253
s caePb3.Scfld02_0      1941710 553 +  4147112  
i caePb3.Scfld02_0      I 3683 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I

a score=2025.000000
s ce10.chrX             3534682 10 + 17718866 TTGAGAAAAT
s cb4.chrX              8660394 10 + 21540570 CTAAGAATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   644317 10 -  4500979 ttgaaaaaat
i caeRem4.Crem_Contig0  C 0 I 150
s caePb3.Scfld02_0      1942263 10 +  4147112 TGCAGAAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I

a score=-17213.000000
s ce10.chrX             3534692 394 + 17718866 CATCTAAATACTATTA----------------TAAATAGAGTAGCGTCTGTGGA----TTGTTCCCCAAAATGACAGAAATTAATCGCAATATACCAATAATATTTACATGAAAAAGTGTAGCATTTTGAAAGCttt-----ttataattttttgtattaaaattttGCAACATGACAATATAATTTTTTTTGAATTACTCGCATAAACCAATTACGTAAAACTTTTACTA------------TTCGGCTGTTTTTTTTCCAGTAACATCGCATTTTCAGAAATTTTTCTGCAGaaatttttttaaat------ttaatttCAAACCGATTTCGAGTTTTTTCAAATTATTTTGGATTATTAAGTTTTCTTACGAAAAATCTC--TGAAAATGTGAT---ACGCAATGTTTGAACTTATAAATCCGAAAAAAATCGAAATTA
s cb4.chrX              8660404 362 + 21540570 TAATTATACTTTACTGGTCACATTTCACTGTTCAAATGGA--------TGTGGAGATGTATTGCCTCTAAGTTAT----TTGCTTCACAATTTAAAATTGGCGTT------------TTTGGAATTGtaaaaactttcattttca----cTTTCGTATTCTA---------------AGttcaatttgttttaaatttc-----aaaaccgattccttgaaagattttttgaaattggacgTATTC--CGGTTTGTGGTCTAATAAGTTGGTAGGTCTAATAAGGTTTGTG----------GTCTAATAAGTTGCtcatttctgacttttttttagtttttcgagattttttctttttgttcggCGGCA--ATGAACGTTTCTGccgaaaatttaatttaaagcAAATCGTG---TAActtat----aaaa-----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1942273 243 +  4147112 --------------------------------CA---------------GCGGAAGCGATTTTCCTGTa----------------------------------------------------------taaaaacatgcaaaatcAAGACCTTTTGTAATCGA---------------AACGCAAATT-------------------------CGCCCCAAAAACtatctcgaaat--------ttt--ttgtttttggt----taaGAT----GCTCCCATTCTGTCCATA----------ATTTAGT------TTCATCACAAACTTACTATATGATTGTAGAGACATGT--GGAATGTTTACAAGAA--ATaagaggtttt--tgaaaa-------taacacaTCCTTTG---TTATAGAT----AAAAACTCGACATCA
i caePb3.Scfld02_0      C 0 I 118
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I
e caeRem4.Crem_Contig0   644327 150 -  4500979 I

a score=-708.000000
s ce10.chrX             3535086 144 + 17718866 GGTATTT------GATTTGCGGGAATTCAAATATATGATAATTTGACCCTTTCGAATTTTTTTAGACTCTATTTTAGTACTTTTAAAGTAACAATCCTAAGTTTCAGTTTTAAGATTTCATTTCAATTCAATTGAAATTTTAGCT-----CAATC
s cb4.chrX              8660766 143 + 21540570 gtttttttaaatgaatgcATGCTACTTCAATCACAAagttatttcattttttaacattttgttCTGCTCGAAAT--GCgcttttcaatgaat---------tttccGCGGCAAAACT-CATCGCAACCGGACAAGAATAATAATTATCCACCTTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1942516 118 +  4147112 I
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I
e caeRem4.Crem_Contig0   644327 150 -  4500979 I

a score=-6474.000000
s ce10.chrX             3535230 133 + 17718866 GTATTAATTTCAGAAAATAACTTGTTCTGTCTGT-----TGC----------------CAAAAAACC---------TTATTTAAAAAAAACTTGCTTTAA---TTTTTAAACCAATTCA-----AATACTCGCGTATTTTGTTGCAAAGCGTTGCCTTTTCAAGCTAAAAT
s cb4.chrX              8660909 158 + 21540570 TTActaattt---aaaatattttcctcCACATTTTGATGAGCTTGTGAGTAAACTTCGCGAACAATT-------ATTCTTCTAGCTCAAAATCCTTTTAACATTTGCTGGACTAgtccacgaggagtacacGACTCTTGGGTTCCTAggccat---ttttcatattcGAAT
i cb4.chrX              C 0 I 35
s caePb3.Scfld02_0      1942634  83 +  4147112 GTGATAATTC---AAAA----------------------AGC----------------CGGATAATTCCTAGAAACTTTTCCGATCGAAAACTCTCTTA----TTCATTAACCAGC-----------------------GTTTATTAAGCT--------------------
i caePb3.Scfld02_0      I 118 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I
e caeRem4.Crem_Contig0   644327 150 -  4500979 I

a score=-230.000000
s ce10.chrX             3535363 52 + 17718866 TGTCTCAAAGTTTTGAGATTTTTCCaaataaaattaataaaaaaaaCTAAAA
s caePb3.Scfld02_0      1942717 46 +  4147112 TGCCAACAAGTTTTCTAGTTTACTCACATTCTCTGTGTCAAAACAA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e cb4.chrX              8661067 35 + 21540570 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I
e caeRem4.Crem_Contig0   644327 150 -  4500979 I

a score=-4834.000000
s ce10.chrX             3535415 75 + 17718866 TGACGTGTTGAACAATACAACtttttatttttaaactataaataagtttttaaatatCCGAAAATT-TCAAGACCC------------------
s cb4.chrX              8661102 52 + 21540570 TTACATGTTCAATAA-ACATcaatttctcttc-------------atttttcaatgtttttagTAC----------------------------
i cb4.chrX              I 35 C 0
s caePb3.Scfld02_0      1942763 53 +  4147112 -----TGTT------------------------------------GTTTATCAACAATTATAGTTTACCCAGACAGCTGACATAGAAGATGACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I
e caeRem4.Crem_Contig0   644327 150 -  4500979 I

a score=-6674.000000
s ce10.chrX             3535490 38 + 17718866 TGGAACTTCTAAAAATCTCTATAACGCAATCT-TACTAG
s cb4.chrX              8661154 18 + 21540570 --AAAAG-----------TAATAATTGAGAC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   644477 33 -  4500979 TAGAACGCCTGTGCACTTTTACCGCTCAAACTG------
i caeRem4.Crem_Contig0  I 150 C 0
s caePb3.Scfld02_0      1942816 16 +  4147112 ----------------TATTACCACAAAAAAC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I
e caeSp111.Scaffold630  5690123 253 + 20921866 I

a score=1844.000000
s ce10.chrX             3535528 3 + 17718866 GGA
s cb4.chrX              8661172 3 + 21540570 GAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   644510 3 -  4500979 GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5690376 3 + 20921866 GAA
i caeSp111.Scaffold630  I 253 C 0
s caePb3.Scfld02_0      1942832 3 +  4147112 GAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   51229 2648 +   823664 I

a score=94578.000000
s ce10.chrX             3535531 236 + 17718866 TACCC----TCAAAAAAATG-----AATGCAT-------------------GCCATATCTCACGTATTTTTTC---GCCTCGCTTC---GGTCCATCCCAGTTC------------TCTCGTT-------TTTTTCTCC-GCTC-----GTTGCGCCCTCAA----------TTTTTGTCATACTTCGCAGATGTGT--TGG---------------------AAGCTGTGCTTGCTCTAAAG--------AAAACAGGATTATTCAGTAGAGGGAGGGGGCAGTGCACTTT-TGCATCTCCTTTT-TCTCGTTTTTCTTC---TTCTCCAAAA-------AAACATT
s cb4.chrX              8661175 271 + 21540570 TACCC-----AGAAAAAGCGAACAAGATGAAT-----------------GTGCCACATTGCACGTATTCCATC---ACACTTGATT---CctccattcttttttttcttgctctcTCCACGTCTTCTCGTATTCTCTTC-TTTCGGGGAGAGGCgccctcaat--------ttttttttcatacttcgCAGATGTGCATAGG---------------------GAGCTGTGCTTGCTCCACGGAGGGAAGAAAAACGGGATTATTCAGTAG-----------GGTGCACTCTAgacatctcttttt-tcttgtcttctttttgggcaagaaaat-------aaacatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   644513 226 -  4500979 Tactc-----agaaaaaatg-----tttgtat-----------------gTGCCATATCTCACGTATTCCGTC---GTTTCTCTCG---GACCCATTCTATTTC-----------------TCTTCCCGTCTTCCCTTT-TCTC-----CATGCgccctcaa-----------ttttttcatacttCGCAGATGTGC--AGG---------------------GCGCTGTGCTTGCTCCAGAG--------AAAACGGGATTATTCAGTAG-----------GGTGCACTCT-TACATCTcctttt-t-tcgtcttctttt---gaaaaagaaa-------aaacatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5690379 233 + 20921866 TACCC-----AG-AAAACCG-----AATGTTCA------AAGA------GTGCCTTCTCGCACGTATTCCCTC---GTTTCCCTCGGTCCCTCCATTCTATTTC------------TCTTGGCTTCcc--cttccattt-tttc------atgcgccctcta---------ttttttgtcataCTTCGCAGATGTGT--TGG---------------------GAGCTGTGCTTGCTccagagaaga----gaaacggGATTATTCAGCAG-----------GGTGCACTCT-AGcatctcctttt-t-tcgttttcttc-----------aaa-------aaacatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1942835 233 +  4147112 Taccc-----agaaaaaatg-----aatgttt-------cgGA------GTGCCATATCTCACGTATTCCCTC---TTTTCCCTCGG--CCCCCATTCTATTTC------------TCTCgtcttccc--ctttttttcgcCTC------TTGCgccctcaa---------ttttttgtcataCTTCGCAGATGTGT--CGG---------------------GAGCTGTGCTTGCTCCAGAGAA-------AAACGGGATTATTCAGTAG-----------GGTGCACTCT-AGCAtctccttttct-tcgtttttcttt--------cgaaa-------aaacatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   53877 281 +   823664 TGCCCTCaattgaatgaatg-----aatgaatgacaAGTGGGATTGTATGGGACATATCTCACATTTCCcctccttttttctctct---cgGTCCTTCTATTCC------------TCGATTC-------ACTTTTTTG-CCTA-------TGCCTCCTCAACGGGCCCAATTTGTTGTCATACTTTGCAGATGTGT--TGGCGCGAAGAGGGAAAACGAAAAGAGCTGCGCTTTCTCC--------------AATGGGATTATTCAGTAG-----------GGTGCACTCT-tgcttttccttct-tttttttcttctcc---ttttttcaaacgtttccaaacatt
i caeJap4.Scaffold18194 I 2648 I 1248

a score=-40422.000000
s ce10.chrX             3535767 100 + 17718866 GCTATGCACCCTCCT-------------AAAACGTTTT--------------------AAAATCGAAATAGCTTTG----------------------------------------------------------------------------CTGCGAAACGCTTGAGTCAATACATTTTT--TGTAT----------TTGAAAATTTTTA---------------GTTTCAAGAT
s cb4.chrX              8661446 106 + 21540570 --tcgttttctattggttttttttttccaaaatgcgTTT-----------ACGTTGCCAGGAgcaaaac--gtttg-------------------------------------------------------------------------------aaaaacatttgg------atttttat--ttcAGTG-------------GTTGTTTG---------------GCCTCAAAAT
i cb4.chrX              C 0 I 118
s caeRem4.Crem_Contig0   644739 153 -  4500979 --tagtttttttttgtttgaattgtttgaaaatgttttttt------cagctgttg--aaaagcggaat--ttttgttttgaaaatt--------------------------------------------------------------agtgtcaaacacaaatgt-------ttttttt--ctcattgcgTTTCCTTCCCAGTTTTTTACAATTTGATATTCCTGCAACACGAT
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5690612  43 + 20921866 --tatttttctttta-------------aacatttgttttc--------------------------------------------------------------------------------------------------------------------------tcga------ggattttc--tttat------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943068 155 +  4147112 --tatgctctttttg-------------aaaacgttttttcttttccccattattt-------caggat--ttttc---ttaagttttaatttccgaatattcaaaaaaccagagaaataACTCAAAATCATTCATCAACCATTTGAAAGATTTAGAAATCAGCCGA------AGTTTATCGGTTTAT------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   54158 1248 +   823664 I

a score=-20095.000000
s ce10.chrX             3535867  89 + 17718866 ------------------------------GAGTT---TTTATGTGTATGCTCAAAAATAAA-------AGTAGTTGTATTTTGAT--------------TTCCATACTTGAGATAATGAAAAAAAATCTCC-------CCAAAGC----------------------TACT----
s caeRem4.Crem_Contig0   644907 166 -  4500979 gcagttttt--ttctattcgcCTACATCTCAGATTAGCCGTATTAGCATGTAGCTAATCAATCTCTGCTGTTCCTCTCGTTCTCTTCTAATCTCCCTTCGTTTTAATCTC---TTGTTAAACTAAACTCTGCAA-----TAAAAAACCGGTTAACGGTAGTTTCAGCTTGAAAGCT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5690655  86 + 20921866 -------tt--tt-------------tctcacatc-------------TGTGCAGAA------------GATCTTCAAAATTCCCT--------------TTCCCGTCAA---ATGAAAACGTGAGATTTTCAcgagattcaaaaa----------------------taca----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943223  94 +  4147112 -------CTGATT-------------TTTAGGATTaa------ttgaatgcaaaaaa------------gattGCTTTGATCTCTTGTA----------GTTCCAATCTC---CTAAAGATCTTAACTCtgcaa-----taaaaac----------------------tgaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   54158 1248 +   823664 I
e cb4.chrX              8661552 118 + 21540570 I

a score=-15962.000000
s ce10.chrX             3535956  84 + 17718866 -----ATGGATTACATC-TATAAAGTCACA----TTAATCACAT---------------TAAGATTAAC------ATCCAGCAATTATGTTTTTTATCGCCTGGTTCTTTCCTCT---------------
s cb4.chrX              8661670  74 + 21540570 -----ctAGCTTTAAGG-TAGAGAA----ATTTTATGATCATTT-------------------------------CATCAGGTGGCCATTTTATGACCATCACGGGGTTCCCCTA---------------
i cb4.chrX              I 118 I 3
s caeRem4.Crem_Contig0   645073  70 -  4500979 -----ATAGGTTACAGG-TAGAGAA----A----GTGATCATTT-------------------------------TGTCAGGTGGACTGTTTATGACCATCACGGGGTTCCCCCT---------------
i caeRem4.Crem_Contig0  C 0 I 107
s caeSp111.Scaffold630  5690741  91 + 20921866 aaatattAGTTCTAATC---TGATT----A----GTCATCATCTCAGATTA--------ACATATCAAC------AGATA-GTAAATTATCTCT-------------TCTCCCAATTGATCTCTTGTCGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943317 122 +  4147112 acaaaccGGTCCTAAGCATAGAACA----A----TTAAGCTTCTCATATAAGTAAAGCGACAGGTAGACGAAATGAGTCAGGTGAACTGTTTATGACTATCACGGGACACCCCAATTGTTCCTGTCCTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   54158 1248 +   823664 I

a score=-1061.000000
s ce10.chrX             3536040 14 + 17718866 -TTCAATTT---TTTTAA
s cb4.chrX              8661747  9 + 21540570 TCCCAGTCT---------
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold630  5690832 17 + 20921866 -TTTAATCTCCTGTTAAA
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      1943439 17 +  4147112 -TCTGATATCATGTTTca
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18194   54158 1248 +   823664 I
e caeRem4.Crem_Contig0   645143 107 -  4500979 I

a score=-2092.000000
s ce10.chrX             3536054 42 + 17718866 AACATAA---------------------CATATTGATACAATAAAAAAATATT-CAAAAAGAAA
s cb4.chrX              8661756 35 + 21540570 ----------------------------CACACTGATATCATATTTCAAGTTG-TCAAATGAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5690865 64 + 20921866 AAAACCGGTTGTTGATAGAAGCTTTTCAGGCATTAAAGTCAGGTAGAAAGGTGATCAGGCGAAC
i caeSp111.Scaffold630  I 16 I 26
e caePb3.Scfld02_0      1943456 36 +  4147112 I
e caeJap4.Scaffold18194   54158 1248 +   823664 I
e caeRem4.Crem_Contig0   645143 107 -  4500979 I

a score=-6873.000000
s ce10.chrX             3536096 47 + 17718866 --CATATA-------------------------------------------------CATTTATTTGTTAAAATAAATTAGTCATGTT------------GTCACGTTCA
s cb4.chrX              8661791 57 + 21540570 GGagtttttttcgtt------------------------------------------gtttatTTCGGTCAAA-AAACATACAATATATAGACAATAGTG----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5690955 85 + 20921866 --AGTCTACTTCTTTGATATCACATTACACGTTTTGAATGGAATTcctcttttgtttcattgttttgGTCAAG-AAACATTATATGTC----------------------
i caeSp111.Scaffold630  I 26 C 0
s caePb3.Scfld02_0      1943492 36 +  4147112 --cgtCCA-------------------------------------------------CATTGTTTTGGTCAAG-AGATGATTTATATC----------------------
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold18194   54158 1248 +   823664 I
e caeRem4.Crem_Contig0   645143 107 -  4500979 I

a score=10940.000000
s ce10.chrX             3536143 218 + 17718866 CAAGAAAATGTCGTCATTTTTATTTAT--AGA-TATTTATCAAA---CAAAAAATGACTTGGCACGTGACTAAACG----TTGAAACT------TGTAT---TTT-------GTTTCGAATTCTTCTACGATCCCC----------T----------TTTCCCTTTTTCTGT---GTATGCCTATTTATATCATTTTTCTCTTGCTTTTTTCTGC------------------TTTACAA--TGTCCTAATCAC----CTAATTTC------------------------------TCTGGGTTCGCTAGCAATCTCGAAA
s cb4.chrX              8661848 269 + 21540570 CATGGTAATGACGTCATTTGT-TTTTC--GAACTATTTATCACATCATGACAATTCTCCTAAAACGTAAC------------CAAGAA------GGGAT---TTCTACtcgctttttgaaattt-----gagtcccctttccctcga-----ttgtatctctttttctcttt---ttctggctttttctaaactttttttctttgatttttcc-----tgTTCTAAG------TACAGAAGCCTCCCTAATCAC----ATATATCCTAACAAACTCGTCAATCAAAATCAATGTCATCGGGTTCTTGtcccaatttcaaaa
i cb4.chrX              C 0 I 109
s caeRem4.Crem_Contig0   645250 220 -  4500979 CATGTCAATGACGTCATGTTTATTTAT--AGACAATTtaacaaa-cacaaaaa-acgcCTAAAACGTGAC--AATGTC--TTAAAGAAAAACGGAGGAT--------Ctccctttttgaaattt-----gagtcaC----------A-----TTGTATCTTTCTCCATATTT--CTTCTTGCtcttcccccatttttttgct----tttttccacCAGAATTCCTAG------TGCAAAA--TGCACTAATCAC----CCATATTC------------------------------TCTGGTTT-----------------
i caeRem4.Crem_Contig0  I 107 C 0
s caeSp111.Scaffold630  5691040 233 + 20921866 ------AATGACGTCATTTCTATTTATATGGGTTATTTATCAT----AGAAAAAACGCCTAGAACGTGACTTACTGacagttgaaaaa------aggattcctcc--ttctttttttgaaattt-----gagtcTC----------A---TGGTGtatctctcaatttcttcgCCCTCTCGTTCTCCTTCTCACtcttttcttgctttttttgctcaATGTCAAAAGTTTTTATACAAAA--TGCACTAAtcacccaaaaaaaatt------------------------------tcgaa--------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943528 223 +  4147112 ------AATGAcgtcatttctatttttgaaggtTATTTATCATA-CAAGAAAAGTTGTCTGAAACGTGACTGACTGACAGTTGAATAA------AGGAT---TTC--tgccttttttgaaattt-----gactctc----------atgttgttgtatctctcaatttctttttctctccattttttcttttgctc----------ttttttgctcaatGTTGAAAGTTGTTATACAAAA--TGCACTAATCAC----GTACATTC------------------------------TCTGAC-------------------
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194   54158 1248 +   823664 I

a score=1711.000000
s ce10.chrX             3536361 7 + 17718866 AGCGAGT
s caeRem4.Crem_Contig0   645470 7 -  4500979 AGAAAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5691273 7 + 20921866 agcaAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943753 7 +  4147112 AACAAAC
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194   54158 1248 +   823664 I
e cb4.chrX              8662117 109 + 21540570 I

a score=19669.000000
s ce10.chrX             3536368 59 + 17718866 CATCGTCGTCAATCAACAAGTGTCAATTGTA-C-TAGCGCATCAAATTTGAAATTTTGCA-A
s caeRem4.Crem_Contig0   645477 57 -  4500979 CAAAGTCGtcaatcaaaaagtgtcaatgGTCTCCCATCACATCAAA----TACGTTTGCA-A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5691280 55 + 20921866 CAGAgtcttcaatcaaaaa-tgtcaGCGGTC-CGTGgctcatcaaa----aaattttgca-a
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943760 57 +  4147112 CAAAGTCGTCAATCAAAAAGTGTCAATGGTC-CGtgtctcatcaaa----aaatcttgcAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   55406 58 +   823664 CATGCTCGTCGATCGAAAG-TGTCAAAGGTT-C-CCGCTCATCAAATTTAAAGGCTTGCG-A
i caeJap4.Scaffold18194 I 1248 I 592
e cb4.chrX              8662117 109 + 21540570 I

a score=-4569.000000
s ce10.chrX             3536427 22 + 17718866 TTTCCATTGGATATTTCTGGCA----------------------------------------------
s caeRem4.Crem_Contig0   645534 38 -  4500979 GTGCGCCTGGTTATTTCGAGAGTTAAAAATC-ACCG---GAA--------------------------
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold630  5691335 64 + 20921866 cTGCGCCTggctattttgaaattttgaaatcaccGGAAAACGT---TTTCACT-TGTGATTTAAGATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943817 65 +  4147112 GTGCGGCTGGTTATTTTTAAGTGTTGAAATCACCGG---AAAACGTTTTCACTCTGTGATTTAAGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   55464 592 +   823664 I
e cb4.chrX              8662117 109 + 21540570 I

a score=29816.000000
s ce10.chrX             3536449 294 + 17718866 -------ACTCTCAATGAGCAAACAGC-AGGG---TTTTTTT------------------------TCAAGTTCATGTGA-----------CAAAAGGTCAGG------------TGAAGCAAGCCAAAGTACCGA------AACCATATGATCATTCTCTGGTTAGATGTTTCTCAAGCTTTCGGGGCAAATTCTCGTTC----TCGAATTTTCT---------------------ACCCTAATCTAG----------------AAA---------------------ATGTTTAGGTAATCATATATAATT---CTT--ATACCTATGTTC---------------------TTTTAAACGACA------------------ATTGTCCTTTTCTTTTTTGCCACCACTGCC-AGTTTTT-----TCCTTATCAGT-TTAATTGTGTTTCCC-TTTCTTTTTGCAACGGT
s cb4.chrX              8662226 397 + 21540570 -------ATTTTCGGTGAGCAAACAGC-GGCAACTCCTGAGGTGCAGCAGAGGGACGCATTTCGTTTCG-TTTCATGTGATGTGTTGATACAAAAAAGTAGAGTGAAGAAGGAGATGAAGCAA--CATAGTACATACTGAGACACCTGATGATCATTCCCTGCTTCCTATTACCT-----------------TTTTCCTTCCATTTCAAAGTTTGTGAT------AGGAGGGAGGACATcgtaaaattgaattgatgGGACGAAAAAA-----------------TGGTTCTCGAAGGTTCTAGTACCCTCTAGTCTTT--TTTGCCATTCTCCGa------------tttttattataaaaaaaggaggttcactctctctctctttcaattttttatgtgTCCTTTCTTCTT-CATGCCT--------TTATCagt-tttctcacattttcccTTTCTGTTTGCGGTGGT
i cb4.chrX              I 109 C 0
s caeRem4.Crem_Contig0   645605 335 -  4500979 -------TTTCTCAGTGAGCAAACAGC-GGCA---CCTGAGG----GCACA---------------TCG-TTTCATGTGA--TGTTGATACAAAAAGGTTGAG------------TGAAGCAA--CAGAGTACAGATACACACACCTGATGAACATTCTCTGcttccattttcca-----------------tttcacCTA----TCGTAATTTTT----------------------CCTTAGGCTTG---TGATGtgatataaaataaaataaaaagagaaaatgcaTCTCGAAGGTTCTAGTACACTTGAGAATTT--TTATCCGTGTCC---------------------Ttataaaagaaa------------------tttgaaattttcttcttgttgATTTCTCTT-CGCATGTTgtatttcttatcagt-tttctcacatttt-cttttctatttgcGGCGGT
i caeRem4.Crem_Contig0  I 33 I 155
s caeSp111.Scaffold630  5691399 325 + 20921866 tcccatttttttcggtgagCAAACAGC-GGCA---CTCGGGG---GGCACA---------------TCG-TTTCATGTGA--TGTTGATACAAAAAGGTTGAG------------TGAAGCAA--CATAGTACAGACACAGGCACCTGATGATCATTCTATGCTTTCttttacct-----------------tttttctcc---tttgaGGCTTGTGATGGGCGGAGTGAAATGGGAATTGCCATCTCG----------------AAT---------------------ATTCTAGGACCTTCTTGTCGTTTA---TTT-----TCTATATAAGCAAA----------Ttgcttttttg-------------------------cttttcattttttttgttcgaattgCTTTTGCATGATT-------GTTATCAGTGTTTCCCACGTTTTCC-TTTCTATTTGCGGTGGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1943882 332 +  4147112 TCCC-TTTTTCTCAGTGAGCAAACAGCGGGCA---CTT----------------------------TCGTTTTCATGTGA--TGTTGATACAAAAAGGTTGAG------------TGAAGCAA--CATAGTACAGATAGAAACACCTGATGATCATTCTCTGCTTCCTTTCACCT-----------------TCCTTTTTT---ACCTCAGCTTGTGATGTATGccgagaaaagagaaaattcatATCG----------------AAT---------------------TTTCTAGGGTCCTCGAgtcgtttt---tttattcagcCATATAAGGGAGgaattctattttatttttttg-------------------------tttgccctttttttcaatttacccTTTCCTACACAAGT-------CTTATCAGTCTTTCCCAcgttttccttttctatttACGGTGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   55464 592 +   823664 I

a score=-2438.000000
s ce10.chrX             3536743 62 + 17718866 CAAGTTTTGAC--TAAAGATTCGCG---------ATATAAGAGAATTTGCAACAAAAAAAACTGTCGCATGGT
s cb4.chrX              8662623 54 + 21540570 -CAGTAGTGGCAGataaggcaaaaa-------aaaaagaaaaaagtccaC-----------TTGATCTCTACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5691724 54 + 20921866 -------CTAC-TAATAGATAAGCG-------AGATACGGCAGAGTCCAC----TCAGGGATTGATCTCCAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1944214 62 +  4147112 -------CTGCAGAAAAGATAAGCGGATAGCAAAGTGTGGTAGAGTCCAC----TCAGAGATTGATCTCCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   55464 592 +   823664 I
e caeRem4.Crem_Contig0   645940 155 -  4500979 I

a score=-6086.000000
s ce10.chrX             3536805 33 + 17718866 CTTGCCGTTCCCGTTCCA-------CTTACGCTCCGAG----------TG
s cb4.chrX              8662677 21 + 21540570 CT-----------------------------CTCCGAAATAGCCACATTG
i cb4.chrX              C 0 I 26
s caeSp111.Scaffold630  5691778 50 + 20921866 CTTTCCGAAAATGTGTTGAGCCGTTCTTACGTTCCGGGATAAACTATTTG
i caeSp111.Scaffold630  C 0 I 38
s caePb3.Scfld02_0      1944276 43 +  4147112 CTTTCCGAAATAGTGTCGAGCCGTTCTTTTGCCCCGAAAAA-------TG
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold18194   56056 31 +   823664 CTtgtcgttctttttttt-----gttgcttgctCCG--------------
i caeJap4.Scaffold18194 I 592 C 0
e caeRem4.Crem_Contig0   645940 155 -  4500979 I

a score=115905.000000
s ce10.chrX             3536838 387 + 17718866  
s cb4.chrX              8662724 402 + 21540570  
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   646095 416 -  4500979  
i caeRem4.Crem_Contig0  I 155 I 12
s caeSp111.Scaffold630  5691866 418 + 20921866  
i caeSp111.Scaffold630  I 38 C 0
s caePb3.Scfld02_0      1944355 431 +  4147112  
i caePb3.Scfld02_0      I 36 I 30
s caeJap4.Scaffold18194   56087 418 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-12404.000000
s ce10.chrX             3537225 36 + 17718866 ATTCAAACATTCGACTC-----------TTCTGATCAGGTG-----------TCC---------TTG
s cb4.chrX              8663126 31 + 21540570 --tagaacattct-----------------------caATG-----------ACCACAGATTAGTTG
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   646523 22 -  4500979 --TAGAACTTTCT-----------------------AGATG-----------GCC---------TTG
i caeRem4.Crem_Contig0  I 12 I 39
s caeSp111.Scaffold630  5692284 28 + 20921866 -------cttttg-----------------------cGATGTTGCAAGAGTTACC---------TTG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194   56505 40 +   823664 -TTTCTATATCTGAGTCAGAGATTGCGGTTCGGTACATATG--------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1944786 30 +  4147112 I

a score=-1931.000000
s ce10.chrX             3537261 8 + 17718866 --TAGCTATT
s cb4.chrX              8663163 5 + 21540570 --TGACT---
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold630  5692312 8 + 20921866 --TGACTTTC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194   56545 6 +   823664 TATATT----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1944786 30 +  4147112 I
e caeRem4.Crem_Contig0   646545 39 -  4500979 I

a score=-17987.000000
s ce10.chrX             3537269 34 + 17718866 --CATAACAAAAAATCCCTACTC--------------------------------TCTTTTTCTTCTC------------------
s cb4.chrX              8663168  3 + 21540570 ------------CAt-----------------------------------------------------------------------
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold630  5692320 26 + 20921866 --CAT-ATACAAAATGACAATGC--------------------------------CTTTGT-------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1944816 22 +  4147112 -------caaaacataaaaGGTC--------------------------------CACTTT-------------------------
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18194   56551 86 +   823664 CGTATGCATCAATATGCAGATTCTTGTGAGTCACTGTAAGGGGGCAAGCGTCATGTTCTTTCGTTCTTTGGTCAGTCACACATGTC
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   646545 39 -  4500979 I

a score=-13046.000000
s ce10.chrX             3537303 174 + 17718866 AATCC--GTGCCTTTTTGAA---ATTTGCAAAACTG--AACG----TTTTTTGCTGCC--------GATATCCTCTCA--CACTTTCCTCTACTCTCTTT---CTCTGCACCATATGCACAAGAGTCCTTCCCG---------------------------------CGGGTTT-CCCGATCAT-TCCTTCTCA-TTTTCGTTCAGCTGGTTTCGGCACTCGGTTTGCAACTCA
s cb4.chrX              8663177 139 + 21540570 gtttcaaaaacactTCCGAA--CGTTTTGCATATC-----------TCTATATCTCT---------ATTCCTCCTT------CTCT------CTCA-------------TTCATATGCATCCAC-ATCCGCCCT---------------------------------GGCATTc-gctcctcat-t---------ttttcgttCAGCTGCCTT--CTCGTCGG-TCGTATTTCA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   646584 162 -  4500979 GACTC--atacattttcgaa--tattttgcAAACCG--AACacctttttgtttcttt---------catccccttc-a--cactct------ctca--ct---ctctgcTTCATATGCACCCGC-CCCTCCCCG---------------------------------CGGGTTC-CCCCAACAT-TCCTCCTCAGTTTTAGTTCAGTTG------CTACTCGG-TTGCATTTCA
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  5692346 161 + 20921866 GATTC--Atccatattcaaa---tttttgcgTTCCG--AACG----TTTTTTGTTGTG--------TATATCCTCT----cggtct------ctctttct---ctctgcaACATATGCACACGC-CCCTTCCCG---------------------------------CGGGTTTCCCCCATCATatctcttcttattttcgTTCAACTC------CTGCTGCA-GTTCAACCCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1944838 160 +  4147112 GACTC--ATTCATATTCGGA---GAAAGTCGAAAAG--AACG----TTTCTTTTTGT---------CCTATCCTCTGA--CACTTT------TGCAATCT---CTCTGCAACATTTGCACCCGC-CCCTTCCTG---------------------------------CGGGCTT-CCCCATcat-tctctctcacttttcgTCGGACTA------CTACTCGG-TTTGAAATCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   56637 212 +   823664 CACCA--GTGCGGCAATAAAGTATTTTGGCAAGTTGCCAATG----TTTCGCTTTTTGGATTAGCTGATTTTCTTGAAGTCAATTT------CCTTATCTGTGCTTTTTCCAAGATGGAAGCTG-CCCTCATTGGTCGCatgtctaaaaaaaaaactcaaatatTTCCGGAATC-GGCAATTGCctttctcacatttttttttttgcc-------ccaTCGGA-ACGCAACTCG
i caeJap4.Scaffold18194 C 0 I 14

a score=-3926.000000
s ce10.chrX             3537477 4 + 17718866 AA--GG
s cb4.chrX              8663316 6 + 21540570 AACCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   646746 4 -  4500979 AA--CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5692507 2 + 20921866 CA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1944998 6 +  4147112 GAACTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   56849 14 +   823664 I

a score=13654.000000
s ce10.chrX             3537481 111 + 17718866 AAAGCTCCGTCTG-----------TCGGCCGAGTAAATATATCACAATATCAATTTCTTGTCAAAGATATGAGTTTG--GTTTCACTTCAACTTTTCACATCACTTTTTTC----TATGTTTTTTTTC
s cb4.chrX              8663322  98 + 21540570 GAAACGCGGAC-----A----CGTTCGGCCGAGTAAATATATCA------TCATTTCTTGTCaa-------agtttt--cttctttcatttttgctC---CTACTCTTTTC---TTATAATACCCGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   646750  92 -  4500979 AAACCACCGTCTGTCGA----CGTTCAACCGAGTAAATATATCA------TAGTTTCTTGTCAA-------GTTATTGAGTTCtatcttcatttctc---tttcacATTTC----------------C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5692509  83 + 20921866 ---CCGCTGTCTATCAA----CGTTCG----AGTAAATATATCA------TTATTTCTTGTCGA-------GGTTTT--Actcttcttcaacttttc---cGCTTATTTCA----------------T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1945004  88 +  4147112 AACCCGTCGTCTGCCGA----CGTTCGACCAAGTAAATATATCA------TTACTTCTTGTCGa-------gtttaa--aaacttttttactttttc-----tttgtttac----------------c
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   56863 119 +   823664 AAACCCCTGCCTGTCGATTCCCGATTAATTAAGTAAACatatca--ctgttttttttttgttaaattgtGAGTTTTC--CCTCTTTCTTGTCTCCTC-----TCTATTTGCTCTTGATACTTTGTTTC
i caeJap4.Scaffold18194 I 14 I 65

a score=-1924.000000
s ce10.chrX             3537592 30 + 17718866 TTACTAAAGCTC--TCCTCTAAT---------------A--------------------------TTTTTGCT
s cb4.chrX              8663420 43 + 21540570 TGATCAAAAATCATCGCGCAAAT---------------A---TATAAATG----------CGTT-TTCCAGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   646842 56 -  4500979 CGATCAAAGCTC--TGCgcaaatagttttttgattgtgA---TATACATA-----------GTT-TCTTGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5692592 43 + 20921866 CGATCAAAGCTC--TCGGCAAAT---------------A---AATGTTTT----------AGCTATTTTTAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1945092 56 +  4147112 CGATCAAAGCTC--TGCGCAAAT---------------AGTGAATGATTGTAAAGTTGAAAGTCATTTTTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   56982 65 +   823664 I

a score=402695.000000
s ce10.chrX             3537622 560 + 17718866  
s cb4.chrX              8663463 499 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   646898 548 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5692635 546 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1945148 551 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   57047 510 +   823664  
i caeJap4.Scaffold18194 I 65 I 423

a score=-4002.000000
s ce10.chrX             3538182 15 + 17718866 TT-CAGAAAATCATAA
s cb4.chrX              8663962 11 + 21540570 -----GAaggatttga
i cb4.chrX              C 0 I 598
s caeRem4.Crem_Contig0   647446 11 -  4500979 -----GAATCATTCGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5693181 12 + 20921866 T----GTAGCTTTTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1945699 12 +  4147112 C----AAAGATTCTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   57980 15 +   823664 -TTTATAAAACAGTAA
i caeJap4.Scaffold18194 I 423 C 0

a score=-3675.000000
s ce10.chrX             3538197 13 + 17718866 AACCA-AAAACAAA--------
s caeRem4.Crem_Contig0   647458  9 -  4500979 ----A-AGTGAGGA--------
i caeRem4.Crem_Contig0  I 1 I 4
s caeSp111.Scaffold630  5693193 11 + 20921866 ---GATAAAAAGTA--------
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      1945711 10 +  4147112 ---TA-GAAAAGTA--------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   57995 21 +   823664 ACCTA-AACAAAAACTAATGAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8663973 598 + 21540570 I

a score=197238.000000
s ce10.chrX             3538210 178 + 17718866 TTTCAGGACAACTCGTCGATTTTGCTGTAACACATGGATCTTATGACGGAGGAGATCAAGGATTATTGAACGACTTCTTTAGCAATTGGAGAGATCTTCCATCTGAGCACAGACTTCCATTCATTTACAACATGACAGCTGGAGCTTTCTACACATATGCCGCTGCCTACAAAAGGTA
s cb4.chrX              8664571 178 + 21540570 tttcaggacaACTCGTCGACTTTGCCGTGACACACGGATCTTACGATGGAGGAGACCAGGGATTGCTCAACGACTTTTTCAGCAACTGGAGCACACTCCCAGCTGAGCACAGACTTCCATTCATCTATAACATGACCGCCGGAGCCTTTTACACATATGCCGCCGCTTACAAGAGGTA
i cb4.chrX              I 598 I 51
s caeRem4.Crem_Contig0   647471 178 -  4500979 CTGCAGGACAACTCGTTGACTTCGCCGTCACCCACGGATCATACGACGGAGGAGATCAAGGATTGCTCAACGACTTCTTCAGCAACTGGAGAGATCTTCCATCGGAGCACAGACTTCCATTTATCTACAACATGACTGCTGGAGCTTTCTACACATACGCTGCTGCCTACAAAaggta
i caeRem4.Crem_Contig0  I 4 I 69
s caeSp111.Scaffold630  5693210 178 + 20921866 TTTCAGGACAACTCGTTGACTTCGCCGTGAGCCATGGATCATACGATGGAGGAGATCAAGGACTGCTCAATGACTTTTTCAGCAACTGGAGAGACCTTCCAACAGAGCATAGACTTCCATTCATTTACAATATGACTGCTGGAGCTTTCTACACATACGCCGCTGCTTACAAGAGGTA
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      1945724 178 +  4147112 TTACAGGACAACTTGTTGACTTTGCCGTCACCCATGGATCGTACGATGGAGGAGACCAAGGATTGCTTAACGACTTCTTCAGCAACTGGAGAGATCTTCCATCTGAGCACAGATTGCCATTCATTTACAACATGACCGCTGGAGCTTTCTACACATATGCCGCTGCTTACAAGAGGTA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   58016 178 +   823664 CTTCAGGACAACTTGTTGATTTTGCTCTCACCCACGGATCATACGACGGAGGAGACCAAGGACTTCTTAACGACTTTTTCAGCAACTGGAGAGATCTTCCTTCCGAGCACAGACTTCCTTTCATTTACAATATGACTGCCGGAGCCTTCTACACTTACGCGGCCGCCTACAAGAGGTA
i caeJap4.Scaffold18194 C 0 C 0

a score=-54.000000
s ce10.chrX             3538388 3 + 17718866 AGT
s caeJap4.Scaffold18194   58194 3 +   823664 CAT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1945902 0 +  4147112 C
e cb4.chrX              8664749 51 + 21540570 I
e caeSp111.Scaffold630  5693388 0 + 20921866 C
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=-1325.000000
s ce10.chrX             3538391 18 + 17718866 GTTTTTTACAG---TTTAAAT
s caeSp111.Scaffold630  5693388 19 + 20921866 --TGTTATCAGAAATTTAAGT
i caeSp111.Scaffold630  C 0 I 28
s caePb3.Scfld02_0      1945902 16 +  4147112 --TGATTGTAG---TTTACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   58197 19 +   823664 -ACATTAATAA-AATTTAACC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8664749 51 + 21540570 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=585.000000
s ce10.chrX             3538409  9 + 17718866 --AAAATTAGA
s caePb3.Scfld02_0      1945918  9 +  4147112 --GAAGTCGGA
i caePb3.Scfld02_0      C 0 I 300
s caeJap4.Scaffold18194   58216 11 +   823664 Agtaaactaaa
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8664749 51 + 21540570 I
e caeSp111.Scaffold630  5693407 28 + 20921866 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=182.000000
s ce10.chrX             3538418 2 + 17718866 AA
s caeJap4.Scaffold18194   58227 2 +   823664 aa
i caeJap4.Scaffold18194 C 0 I 6
e caePb3.Scfld02_0      1945927 300 +  4147112 I
e cb4.chrX              8664749 51 + 21540570 I
e caeSp111.Scaffold630  5693407 28 + 20921866 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=0.000000
s ce10.chrX             3538420 728 + 17718866  
e caePb3.Scfld02_0      1945927 300 +  4147112 I
e caeJap4.Scaffold18194   58229   6 +   823664 I
e cb4.chrX              8664749  51 + 21540570 I
e caeSp111.Scaffold630  5693407  28 + 20921866 I
e caeRem4.Crem_Contig0   647649  69 -  4500979 I

a score=486.000000
s ce10.chrX             3539148 23 + 17718866 TTTTTTATCTACGGACTTTGTAG
s caePb3.Scfld02_0      1946227 23 +  4147112 TTGTGTATGTACGATTTTTTAAA
i caePb3.Scfld02_0      I 300 C 0
e caeJap4.Scaffold18194   58229  6 +   823664 I
e cb4.chrX              8664749 51 + 21540570 I
e caeSp111.Scaffold630  5693407 28 + 20921866 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=391.000000
s ce10.chrX             3539171 16 + 17718866 CTCATATCAAAAATGT
s caeSp111.Scaffold630  5693435 16 + 20921866 ctcaTATTCACAATAA
i caeSp111.Scaffold630  I 28 C 0
s caePb3.Scfld02_0      1946250 16 +  4147112 CTCACTCAACTAACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   58229  6 +   823664 I
e cb4.chrX              8664749 51 + 21540570 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=680.000000
s ce10.chrX             3539187 3 + 17718866 CAA
s cb4.chrX              8664800 3 + 21540570 caa
i cb4.chrX              I 51 I 2
s caeSp111.Scaffold630  5693451 3 + 20921866 TGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1946266 3 +  4147112 TGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   58229 6 +   823664 I
e caeRem4.Crem_Contig0   647649 69 -  4500979 I

a score=-311.000000
s ce10.chrX             3539190 1 + 17718866 C
s cb4.chrX              8664805 1 + 21540570 a
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   647718 1 -  4500979 c
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold630  5693454 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1946269 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   58229 6 +   823664 I

a score=374838.000000
s ce10.chrX             3539191 770 + 17718866  
s cb4.chrX              8664806 805 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   647719 781 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5693455 751 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1946270 767 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   58235 835 +   823664  
i caeJap4.Scaffold18194 I 6 C 0

a score=13.000000
s ce10.chrX             3539961 5 + 17718866 GCATG
s cb4.chrX              8665611 5 + 21540570 gcACG
i cb4.chrX              C 0 I 54
s caeSp111.Scaffold630  5694206 5 + 20921866 Gcacg
i caeSp111.Scaffold630  C 0 I 107
s caePb3.Scfld02_0      1947037 2 +  4147112 TT---
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   59070 5 +   823664 GCacg
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=0.000000
s ce10.chrX             3539966 5 + 17718866 TCGGA
e caePb3.Scfld02_0      1947039 5 +  4147112 I
e caeJap4.Scaffold18194   59075 0 +   823664 C
e cb4.chrX              8665616 54 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=578.000000
s ce10.chrX             3539971 15 + 17718866 AACTATCAATTAATA
s caePb3.Scfld02_0      1947044 15 +  4147112 TGcaattgaatgatt
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   59075 15 +   823664 aaattttaaataata
i caeJap4.Scaffold18194 C 0 I 40
e cb4.chrX              8665616 54 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=273.000000
s ce10.chrX             3539986 3 + 17718866 TTT
s caePb3.Scfld02_0      1947059 3 +  4147112 ttt
i caePb3.Scfld02_0      C 0 I 110
e caeJap4.Scaffold18194   59090 40 +   823664 I
e cb4.chrX              8665616 54 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=0.000000
s ce10.chrX             3539989 32 + 17718866 TTGATATTGGCTTGAGATATGGAGTAATTAAC
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I
e cb4.chrX              8665616 54 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=970.000000
s ce10.chrX             3540021 93 + 17718866 ATGAAAAATCCTAAAAGAAAATGTTTCAAAATATTACATTTGTCGGGAGAACCTTAGAACACATTAAGTAAGTAGGTACGTGAATGATTTTTT
s cb4.chrX              8665670 74 + 21540570 ataaaaaa----agaagaaaaacattgaaaa-atcaatttggtcgaaagtattacgaaataagttaaa--------------aataatatttt
i cb4.chrX              I 54 I 97
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=0.000000
s ce10.chrX             3540114 109 + 17718866 ATAATCCATAGGGACTTATTTGAGAACGATTTAAATACAGGTAAATTGCATTGAAAAATCTTACTGAAGGAATAGAAACTTGGTTTTTTGCAGAGGACCTCTAAAAAAC
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090  40 +   823664 I
e cb4.chrX              8665744  97 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500  15 -  4500979 I

a score=1054.000000
s ce10.chrX             3540223 53 + 17718866 TGGAAATTTTAGTTTTTAGGTTATGTAATTCAAAATATAGATTTGTTTTGTTT
s cb4.chrX              8665841 44 + 21540570 CGAAAAGTCGagtttttg---------cttcaaaattcgtatttttttaattt
i cb4.chrX              I 97 I 44
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=0.000000
s ce10.chrX             3540276 57 + 17718866 GCGACCTCGCTTTTCCAATGACGTACTTTTTTTTAATCAGCACTTGGGATTTTGGTC
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I
e cb4.chrX              8665885 44 + 21540570 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=45.000000
s ce10.chrX             3540333 49 + 17718866 GTTCCTTAGTTAAGTAGTCCCGTAGTTACATAGT-TAGATAAGAATAAAT
s cb4.chrX              8665929 44 + 21540570 GTGCATCAGT-AAGTAGA-----GATTACTTAAAACATATCGGACTAGAT
i cb4.chrX              I 44 C 0
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I
e caeRem4.Crem_Contig0   648500 15 -  4500979 I

a score=-6646.000000
s ce10.chrX             3540382  93 + 17718866 TTAATATG-----------------------TTACCTTTTGAAAATTTGAAAAAA--------------ATTAGTGAAGATTCCTAC------AAAGTTATT--AATCCATATAAACAGTTTTT-------CATACCATATTAGC
s cb4.chrX              8665973 141 + 21540570 -TTGTAGGTGTTGAGAAGCTGAAACCCATGCTTAATTAGCCAAACTAAAAACCAACAAACGAACATTCTTctgttattgatttttatctgTCGGGCgttcccaaaaaattggaaaataattcCTATCGTCAAATATCATAAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648515  90 -  4500979 -------------------------------ttgatttttcaatttttgaatgag-------------ttcta--agggatttttcc------agagttctttaaattttttcagattcattttaacgttttcatccataat---
i caeRem4.Crem_Contig0  I 15 C 0
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090  40 +   823664 I
e caeSp111.Scaffold630  5694211 107 + 20921866 I

a score=-1800.000000
s ce10.chrX             3540475 4 + 17718866 ATGT--
s cb4.chrX              8666114 3 + 21540570 ---CTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648605 3 -  4500979 ---ttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694318 4 + 20921866 ATAC--
i caeSp111.Scaffold630  I 107 C 0
e caePb3.Scfld02_0      1947062 110 +  4147112 I
e caeJap4.Scaffold18194   59090 40 +   823664 I

a score=-2684.000000
s ce10.chrX             3540479 5 + 17718866 TACAA
s cb4.chrX              8666117 1 + 21540570 T----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648608 5 -  4500979 caCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694322 5 + 20921866 TCTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947172 5 +  4147112 taaat
i caePb3.Scfld02_0      I 110 C 0
e caeJap4.Scaffold18194   59090 40 +   823664 I

a score=166660.000000
s ce10.chrX             3540484 287 + 17718866 TTCAGGCCGCATCACCATCGACTGAGGAGCGCCGCGCCGCCTGGGAAGCCGGACAGCCTGATTACTTGGGACGTGACGCATTCGTTCACATTCAGGAGGCTCTGAACAGAGCGCTCAATGAGTAATT--CGCCGACA------------CATT-GCCTTTATAACCATT-CTTTGTTTTTT-------------TATACCTACACCCCCATTG------ACATCGT-AAAACA---ACTCGGTACAA-TTAC--TATT--------------------------------CCAAA-ATTCTCTTCTCCCCCACGTTTTTTTTAAACTTCATCTG---TTGC---------TCTGTTGACAATTATCCATATCAT
s cb4.chrX              8666118 294 + 21540570 TTCAGGCTCCAACTCCATCCACAGAGGAACGCCGCGCTGCTTGGGAGGCCGGACAGCCAGACTACTTGGGACGTGACGCATTCGTCCACATTCAGGAGGCCCTCAACAGAGCGCTCAATGAGTAATTTCTACCGACGCATTGCTCATCAAATA-CCGTTTTTC----TTACTTTCTTTGCC-------------CCTTCCCACTGACCCATTG------ACATCGTAAAAACA---ACTCGGTACAA-TTACAATATT--------------------------------ccatt-ctttc-----------atttttttccttattttatt-----tttc---cccaAGTCTGTTGGCAATTGTTCATATCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648613 282 -  4500979 TTTAGGCTCCAACTCCATCTACCGAGGAACGTCGTGCAGCTTGGGAGGCCGGTCAGCCAGACTACTTGGGTCGTGACGCATTCGTCCATATCCAAGAAGCATTGAACAGAGCGCTCAATGAGTAATAT-TGCCGACG------------ACTC-CCGTTCTTAC-TGTTACTTTCTTTATT-------------CAACTCCCTTGACCCACTG------ACATCGTAAAAACA---ACTCGGTATAA-TTACACTATT--------------------------------CCACA-TTTTC--------------TCCCTCTTTATTCTATTCG---TTGT---CCCCATtctgttga-attttttcatatcAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694327 300 + 20921866 TTCAGGCTCCAACTCCATCTACCGAAGAACGCCGCGCCGCTTGGGAAGCCGGTCAACCAGACTACTTGGGCCGTGACGCATTCATCCACATTCAAGAGGCATTGAACAGAGCGCTCAATGAGTAATT--AGCCGACT------------ACCC-TAATTCGTATATGTTACTTTCTTTGTTccaacccccccccccaccCTCTAAACCCATTG------TCATCGTAAAAACA---ACTCGGTACAATCCCCAATATT--------------------------------CCACA-ATTTG---------CCcgtattttcattattttattcG---TTGT---CCCTATTCTGTTGA-CTT-TTTCATATCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947177 294 +  4147112 tttaggCACCAACTCCATCCGTCGAAGAACGTCGTGCCGCTTGGGAGGCCGGTCAGCCAGACTACTTGGGTCGTGACGCATTCATCCACATCCAGGAGGCATTGAACAGAGCGCTCAATGAGTAATT--AGCCGACA------------ACTTGCTACTCTTACCTGTTACTTTCGTTTTT-------------CCACCCTACTGACCCATTG------ACATCGTAAAAACA---ACTCGGTACAA-CCACTATATT--------------------------------CCAAATATCTGCT-------CCCGTATTCTCCTTATTTTATTCG---TTGTCCCCCCTACTTTGTTGA-CTTCTTTCATATCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   59130 329 +   823664 TTTAGACTCCATCGCCATCCACCGAAGACCGCCGCGCTGCCTGGGAGGCCGGACAACCGGATTACCTTGGCCGTGACGCTTTCATCCACATCCAGGAGGCCTTGAACAGAGCTTTGAACGAGTAATT--TACC----------------CCTT-TCGTTTTT---TGTGActgtttttgtt-------------cttgttTTGCTACCCATCGCGAAACACGAACAAGAAACATTGACTTGGTATAA-TTACGACATTCATATCCTCCCCTTTCACCTtctgcccccccccccaa-atcTCCCTCTctttaatgtttttattttattttatttgaatATGT---CCCTGTTTTCTT-----TTACTCATATCAT
i caeJap4.Scaffold18194 I 40 I 24

a score=-897.000000
s ce10.chrX             3540771 36 + 17718866 GTCACTA-GGCCACATCCCCTTTCT-----TGA-----------------------------TTTTC------AATT
s cb4.chrX              8666412 72 + 21540570 TTCACTA-GGTTCCAAGATCCTGATGACTATGAATACACACTCACC--CGTTTATATCCACCTCttc--cctaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648895 54 -  4500979 ATCATAAGGGTCCCCCGGCTCTCTTGATAATGA------AATAACt--cgttt---------tattc------attt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694627 70 + 20921866 GTCTATA-GGCTCCATGACCTTGCTGATATTGT------TGAAACCAACGTTTTTATccacttcttttcctctattC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947471 68 +  4147112 GTCCATA-GGCTCCATGACCTTGCTGATATAGT------TGAAACCAACATTTTTATCCACTTCTTT--ATCTAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   59459 24 +   823664 I

a score=19646.000000
s ce10.chrX             3540807 112 + 17718866 TGTTT----TTTTTTTCAATAA---------TGCTCA--TCG---TAGCT-----TAG-TTG-CCTGAACAGTCTTTCATTTG-----TCTTAAATTTGACTGA-TGGTGTCAGACAATTGAAGA--------AGTATCAATAAAG---TTGAA
s cb4.chrX              8666484 115 + 21540570 ttcaa----ttcttcccGCCGT-------TTTGCTCA--CCACCTTAGAA-----TGG-TTGCCCTGAACTGTTTTTCTGACT-----TCTAATAATTGGTTGATTGGTTTCGGAC-------AA--------AGCTCCACAAATGAAGTTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   648949 119 -  4500979 tccct----CCCTCCTTTTTGTAC---CCTTTGCTCA--TTA---TAGAA-----TAG-TTG-CCTGAACAGTCTTTCTGATT-----TGTTACAATTGGTTGA-TAGTTTCGgacaattcaaaa--------agttccaatAAAGA--TTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694697 104 + 20921866 ATCCC----CCTTTCCCTCGTT---------TGCTCA--TTG---TAGAT-----TAG-TTG-CCTAAACAGTCTTTCCGTTT-----C-CCATAATTGATCGA-TGGTTTTAGACAATTCAAAT--------TGGTTCAATAA----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947539 120 +  4147112 TTCCCTTTGCCCATCCTCCCGT---------TGCTCA--TTG---TAGAT-----TAGTTTG-CCTGAACAGTCTTTCTAATT-----CTTCATAATTGATAGA-TGGTTTCAGACAATTGAAat-aca----aatttcaataaag---ttAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   59483 121 +   823664 -----------------------TGATTCTTTGCTCATTTTG---TAGTTTCTTCTAG-TTG-CCTGAACGGTCTTTCTTGTTGTTTCTTTTACAATTGAATAA-TGGTTTTTGACAAATGAAACGACAAAGTGaatcaaataaaa---tgaa-
i caeJap4.Scaffold18194 I 24 I 114

a score=-8131.000000
s ce10.chrX             3540919 14 + 17718866 TCAA---------------CAGTAAAGGA---------
s cb4.chrX              8666599 19 + 21540570 TCGAA----------TTCTCGGTAAATGA---------
i cb4.chrX              C 0 I 973
s caeRem4.Crem_Contig0   649068 28 -  4500979 TCAAACAttcgttt-ttctctctaatAGT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694801 30 + 20921866 --------ACATTtggtttccaaaaaaatagtaGAGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947659 37 +  4147112 ACAGAATCACATCT-TCCtccaaaaatgtattattGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   59604 114 +   823664 I

a score=-1668.000000
s ce10.chrX             3540933 11 + 17718866 AAGT--CTCCAAG-
s caeRem4.Crem_Contig0   649096  4 -  4500979 ----------AAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694831 13 + 20921866 AGATGGCTTCGAG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947696  7 +  4147112 ------TCTCAAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   59604 114 +   823664 I
e cb4.chrX              8666618 973 + 21540570 I

a score=1182.000000
s ce10.chrX             3540944 64 + 17718866 ----------CTATTTGCCAAGGCCATAAATATCG-----CGTCCGCGATCGTGGGTCACGATGGCAGGTGT-TGAGGGG
s cb4.chrX              8667591 56 + 21540570 ----------CTAGATGGCAAGGCCATAAAT-------------CTGCATCGTGGGTCACGCAAGCAGGTGG-CGATGAA
i cb4.chrX              I 973 C 0
s caeRem4.Crem_Contig0   649100 67 -  4500979 ----------ATATATGCTAAGGTCATAAATACAATGT--TGTCCTCCATTGCGGGTCACGTTGGCAGGTGG-CGATGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694844 78 + 20921866 AAACTCAT-TTTAGACAACCTAGCAATAATTGTAAATACCGACTGTTTCCTTCAGGTCACATAAACAGATGG-CAGCCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947703 80 +  4147112 AAATAGGCAATTAGCTAGTCTcgtccttctttttctctcctcttttttacTACAGGTCACAATGGCAGGTGGTCAGCTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   59604 114 +   823664 I

a score=-5006.000000
s ce10.chrX             3541008 238 + 17718866 GGAAAGACGCACA------------------------TAC-ACAC-ATACAAACGCTAA-------------ATGGGTCCCCTCTCCTCAATTGCCGGTC-AGAGGAGACAGCCAGGAAAGAAGGAAGACACAG-AC----------------GAACACTCGCCGTTCTGTGTCTCT--TCTCTCT---ACTCACGTTTGAATTGTT-------------------CA--CCGGCGGGAACGCTCATCATTCAAATTTGAAAAGC-----------TATT--TTATCTAAT---TTCTTAG----CTTTTCAAGGTTTCAAACTAGTTTTT----TCGTATGTAA-------
s cb4.chrX              8667647 275 + 21540570 GTGAGCGCGCGGACAAAACGct----cacaacacactcacaacac-acactcactcgca-cacaGACAGTCTATA----CAGGCCCTTGGACCGCTCAACACACAATTG-GCCGTGC---GGAGGACGACCCCGAAC----------------ACACATAac---gtctgcgtctcc--tcgtTTT-----------GCGCATTGCC---------------TCTTCT--TCGGCGGGAGTGTTCATCATTCAAATTT--CGGCTGCGTTTATC--TCTT--CTTTCCATTGCCTTTCGTCTTagtttttcaaggtttct-aCCGGTTTTTCGTGGCGCTATCAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   649167 261 -  4500979 GAGAGAGTGCGCA--------------GTCACTCACTCAC-ACAC-ATATACACTCACA-------------ATA----CAGGCCC-CGGACCGCTCTCCCCACAGCGACGACACAG---GGAGGACACCGTCG-GT----------------GTTcgtgtc----tctgcgtctct--tccctcT-----------TTGCATAGCCAATCAATTCAAATCGTCTCCT--ATGGCGGGAACGCTCATCATTCAAATTTGCCAACCCTTTTTATCG-TTTT--CAATCTAAT---TTCCGC-----TTTTTCAAGGTTTCGAACCGGTTTTTCGTGTCGCTTAGGA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5694922 250 + 20921866 AAAAC-----GTA------------------------TAC-ACAC-ATAGACACCCCAG-GAGAGACCA---CTAGGGCCGTCCTCTTCGATTGCCATCC--AAAAAGACGGCCAGC---GAAGGACTTCTCTG-AC----------------GAACggttg----tctgcgtctct--tctctct-atcgttttatttgaattgcC------------------TCT--CTGGCGGGAACGCTCATCATTCAAATTTGCGACgcatttttatctttttt--tcatctttt---cctcaac----attttcaaggtttcgaactggttttt--tGCAATTAAGGC-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1947783 262 +  4147112 GAGGT------TA------------------------TAC-AAAG-AAAGAGACACACA-GAGAGAGGA---ATA-----ACCATCTTCGATTGACGGGC---AAGAGACGACTTGC---GCAGGACCCCGCAG-acccacacacacacacaggaacacttc----tctgtgtctct--tctctCTCGTCATATCGTTTGAATTACC------------------CCCGGCTGGCGGGAACGCTCATCATTCAAATTCGCTTag--tttttatcgtttttcacaatctttt---ttccaac----tttttcaaggtttcgaactggttttA--TGTCATTGACTC-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   59718 256 +   823664 ---------------GGACAGTCGGACACTGCGCAATGAC-AGATGGTAAAGACTAGGAGGATAGAGGG---ACG---------TAGTCGATTGCGGGTC--AGTCAGACAACGAGA---GAGGACCGTCATTG-GA----------------ACACTTGCC----CCTGCGTCTCTAGCCGCCCT-------TCATTTGAATCGTC--------------------T--ATGGCGGGAACACTCATCTTTCAAATTGTCCTCTCTTCCTCCCC--TTTT--CTATCGTTT---TCATCTA----TTTTCTTCACTTTTAAACTGGTTTTC--GGCTATTTTCGGCAGGTAA
i caeJap4.Scaffold18194 I 114 I 35

a score=2777.000000
s ce10.chrX             3541246 45 + 17718866 TTTTGTTCGTTATAAAA--------TTGACCTCATCTGCAAGTGAGTCACTAG--------
s cb4.chrX              8667922 59 + 21540570 GTTTACTTGCAAGGTAATGGTACATATGTTGAATTTAACTTGT--GTTTCGGGTCTCCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   649428 43 -  4500979 ACTTCTTCGTTAAGTAA--------ATGCAAAATTCAACAAGT--GTTTCGAG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695172 43 + 20921866 ACTTTCTCTACAGGTAA--------CCGAGAGATTTAACATGT--GTTTCGAG--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948045 43 +  4147112 ACTATGCCGGTAGGTAA--------ACGACAGATTCTACATGT--GTTTCGTG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   59974 35 +   823664 I

a score=29118.000000
s ce10.chrX             3541291 130 + 17718866 TAAA------ATTTACTTATCATTAAGGTG-TGTTTATTTACGGACTATTGATTTTCCATA--ATTG--------GATTTC------CGTCATCTGATCA----AG--GCCAGA--AAA------ACTAGTAATCGAGAGTTGAAAACTTATTAGTCACGTTTCACT
s cb4.chrX              8667981 141 + 21540570 TCAAC-----AGTGACTGATGA--ACGGCG--ATTCATTCACGGTTTATCGACTTCAAAACGCATTC--------AAGATGGTAG--CGGTGCGCGTCAT----AGGTGgccaa--aaaagtaaaacttgTAATCGAGAGTTT-CGCATTATTAGTCACGCTTCGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   649471 140 -  4500979 TCAAA-----AGTGACTGATGA--GTGACG-CATTCGTTCAcggtttattgatttttgatag-attC--------GATTTGGCTGC-CGAAATCCATCAG----AG--GGCAGC--GAAAGTATTACTGGTAATCGAGAGTTT-AGCCTTGTTAGTCACGATTCGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695215 158 + 20921866 TCAAAAC---AGTGATTGATGACCCCGTCGGCATTCGCTTACGGTGTATTGATTTCTAACAG-ATTGGGTCGGCCCAGCCTGCTGCGCGTCACCTAGTAGCACAAG--GCCGGT--GAATGTAGAACTTGTAATCGAGAGTTT-AGCCTTGTTAGTCACGATTCGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948088 148 +  4147112 TGAAAA----AGTGACTGATGA--CCGTCGACATTCGTTTACGGCATATTGATTTCTGACAG-ATTA--------CTACTCGTCGCGCGGCGTC-ATTGGCTCAAG--GACAGCAAAAAAGTAGAACTTGTAATCGAGAGTTT-TGCCTTGTTAGTCACGATTCGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   60009 117 +   823664 ------TGGCATTGACTGATGA--CTGTGG-AAATTGTTCAcggtttattgatttt-------cttg--------cTAA--------CGGGGTG----------TG--GCCGTA--AAAAGTG--AGGGGAAATCGAAAGTTT--GGTTAGTCAGTCACGCTACATT
i caeJap4.Scaffold18194 I 35 n 35

a score=5611.000000
s ce10.chrX             3541421 33 + 17718866 GGG-----TGTCTAGGTTAGGGAATGCGCTAAACAAGT
s cb4.chrX              8668122 33 + 21540570 AGG-----CTACCGGGTTAAAAAATGCGCTAAATCGGT
i cb4.chrX              C 0 I 332
s caeRem4.Crem_Contig0   649611 37 -  4500979 GAGTTTCTCTACTAGGTTAACGAATGCGCTGAATTGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695373 27 + 20921866 AGG-----TTT------TAGAAAGTGCGctaattcatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948236 33 +  4147112 AGT-----TTTTCGGGCTAGTGAATGCGCTAATTTATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I

a score=-18514.000000
s ce10.chrX             3541454 148 + 17718866 AGTTCTGT--------------AGAACGTTATCTGGCACAGTATTAATCACATATTATCTACAAG----------TAAAAAACATA------------ATGGTTCCTTATCAGTAAGCCTAGACAATTAGATTATCAT------ACAAAATTACTTATAT----TCCGTCTGCAAAGTTCTGCG-----TTTTTCCCAA------------
s caeRem4.Crem_Contig0   649648 144 -  4500979 -AAACTTC-----------------------------------TGGAACGTTCTTTGGCACCGCG-------CGATAAAGGA---------GACTAGCGTGTCCTTCTATCAACA-----CAATTAATATTATCATTTG-----ATAAGAGTGTTTAGGATCAgtttaattagaaaaatatgct-----tttttccaatattttttcacaC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695400 174 + 20921866 ---tctttagttACTGTCATCGAAAACGTT-------CCTGTGCGGATTATTTCTTATCGTTAAGACAACATTGATAGAAGAAATG-ATATGATTA-CGTGTTCTT---------------GAGAAACatattgttttgaaaccaTAAAA-----TAGGA----TTCAAGAAAACAGATGTGTTCTAGATTTCTCCCGagttttttccga-
i caeSp111.Scaffold630  C 0 I 39
s caePb3.Scfld02_0      1948269 147 +  4147112 ---ACTTC--------------GCAGCGTT-------CCAAAGCGGATTATTTCTTATCGATGAG------CTGATAGAAAACGTGCATtttgtta--gtgttttttttgcagaa-----agaaaaacatcttG----GAAGCCATAAAG--TTTTAATC----TTCAGCCAAGC--ATGTGTT-----------CCAAGTGTTTTC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126  35 +   823664 I
e cb4.chrX              8668155 332 + 21540570 I

a score=-699.000000
s ce10.chrX             3541602 42 + 17718866 CCACTAAATCACCAAAAAATCTAAAACTTTCGGCCATATTTT-------------
s caeRem4.Crem_Contig0   649792 43 -  4500979 CCGTTAAATC--------ATTCCGAGTT--CAGAAAGAGTTCAGATCGTTAGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1948416 44 +  4147112 CCTCTAAATC--------ATTCGAAGCTAGCAGAAAGTTTTT---TCGCTGGTTT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18194   60126 35 +   823664 I
e cb4.chrX              8668155 332 + 21540570 I
e caeSp111.Scaffold630  5695574 39 + 20921866 I

a score=3512.000000
s ce10.chrX             3541644  82 + 17718866 TCATTGAAACCATCTGGCAGTGAGTCGAATGTTATAAGTTCAGTCTTTTTT--------------TTTCTATTT--------------TTTCTGTCTCTAAGAATGTAAA
s caeRem4.Crem_Contig0   649835  60 -  4500979 TTATTCAAACCATATGTC-----TCCGCAAGTAATAAATCTAGTTTTTTG---------------CTTGCATTCG-------------CTTCC-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695613 101 + 20921866 TCATTTAAACCACATGTT-----GGCGACAGTAATAaatcttggtttttttgttgcCTGTGACG-TTTCCATCTGATAAATGAGAATATTTCTAGA-CTAAGACAAAA--
i caeSp111.Scaffold630  I 39 C 0
s caePb3.Scfld02_0      1948466 100 +  4147112 TCATTTAAACCATATGTT-----GAGGATGACaataaatttagttttttgagccGCGTGTGCCGTTTTCCATCTGATAAATGAGTGGATTTCTg-----aagacggaaaa
i caePb3.Scfld02_0      I 6 I 49
e caeJap4.Scaffold18194   60126  35 +   823664 I
e cb4.chrX              8668155 332 + 21540570 I

a score=-1880.000000
s ce10.chrX             3541726 26 + 17718866 --------------CTCTAGATGTTGTCAGTAAAGATTTT
s caeRem4.Crem_Contig0   649895 20 -  4500979 --------------CACCATCT------GATGAATGACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695714 40 + 20921866 cctttgctctttttcacAACCTCGTGTAGAAGACAAACTG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1948566 49 +  4147112 I
e caeJap4.Scaffold18194   60126 35 +   823664 I
e cb4.chrX              8668155 332 + 21540570 I

a score=-4392.000000
s ce10.chrX             3541752 64 + 17718866 ATGGTTTCGATTTGTAACCTAA------ATATTACGCAACC------------ACCTATCGACACCGACAAACGGA-GTAGCG
s caeRem4.Crem_Contig0   649915 21 -  4500979 ----------TTTGCAACCGTCGAAAATAGA----------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5695754 74 + 20921866 ATCCTTTTG-TTTTGGAGCGAAGAAACTATATTACGTAACA--------CATTGCTTTGCCGTACCGACAAATAACGGCAGCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948615 76 +  4147112 atagttttg-ttttggGTGAAATAAACTATATCGCGCAACAAAAGGTGGCATTGCTTTGGTGTACCGACAA------GTAGCG
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I
e cb4.chrX              8668155 332 + 21540570 I

a score=6702.000000
s ce10.chrX             3541816 94 + 17718866 GTTGTTCGCACCATAAATTTTGTC------AACTACTCCTTGTAACT-TCCTTTCCTTCACCTTCACTTGTATTTGA---TC-TCATAAACTTGC-GGGTCATTTG
s cb4.chrX              8668487 97 + 21540570 GTTGTCCGCATCATAAATTTTGTG------AACTAGACCAACTAACACCATCGGCCACCCTCTTGTTTCTATCGCCA-CTTC-GTGAAATGTTAC-GGGTCACTTG
i cb4.chrX              I 332 I 253
s caeRem4.Crem_Contig0   649936 88 -  4500979 ---GTTCTCGCCA-GACTTTTGTGCTTTTTCACTTCTCAAAACTGCA-CACAGTTGACCCTTATATT------------TTG-GTAAAATATAACTATGTTACGCA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5695828 99 + 20921866 GTTGTCCGCATCATAAATTTTCCTC-----AACTACACCTACTACTT-TGCTTCCTATCTCCATTTTGTGGTTGTGGGATACTTCGAAAAGTTAC-GGGTCACTTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948691 98 +  4147112 GTTGTCCGGATCATAAATTTTCCTC-----AACTACACCTACTACTT-TCCTCCCCATCTTCATTTCCTGATGGTGGCCTAC-TCAGAATGTTAC-GGGTCACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I

a score=-3403.000000
s ce10.chrX             3541910 58 + 17718866 ----CTATTTAGTTC--TGCCTTACTACATGGATTTCTTTCGGAAATGGTTTTTTGTTCCGGAT
s caeRem4.Crem_Contig0   650030 33 -  4500979 CAAAGTAGTTAACAT--TGCTTTGG-----------------------------TGTACCGAAT
i caeRem4.Crem_Contig0  I 6 I 83
s caeSp111.Scaffold630  5695927 25 + 20921866 ----ACGATTAGCTT--TGCATTAC-----------------------------TGTTCC----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948789 26 +  4147112 ----ACGATTAGCTTCCTTCA-CAC-----------------------------TGTTCT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I
e cb4.chrX              8668584 253 + 21540570 I

a score=-3522.000000
s ce10.chrX             3541968 103 + 17718866 ATTTTTTGTTTCATTAAAAGAGTACATTCGattttataatattttttaaaaCTAGAAAACAATTTATTGTTCTGAATTTCAAAAAAAGCTATGATTTCCTGAC
s caeSp111.Scaffold630  5695952  24 + 20921866 --TTCCTGT---------------------------------------AAACGGAAGTGCAGTTT--------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948815  23 +  4147112 --TCCTTGT----------------------------------------AACGGAAATGAAGTTT--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126  35 +   823664 I
e cb4.chrX              8668584 253 + 21540570 I
e caeRem4.Crem_Contig0   650063  83 -  4500979 I

a score=-31931.000000
s ce10.chrX             3542071 269 + 17718866 TAAAATCTTGGGGCTTTTCGAAGTTTTCTCTTTTCCAACGGCTGG------taaatttatttaa----aattaatttGGTTATCCATATTTTGCACTTTCTCGTAATTAATTCTTTTTTCTGTTAAAGGCCATACATTTTGATAAATTTAACTCAACTTTTTTTAAAGACGGTACTTTTCTATTAAGTTTTTTATAGCTAA-----------CTTCATTTGAAATC---TACAAA-ATTGAAGTATTATAGTTCTTAGTGTTTTAGAATAAATTGTTTGTTTTTATTCTTTTTC-------
s caeRem4.Crem_Contig0   650146 232 -  4500979 TAAAATTCCGGGTCACTTGCGAATTAGCTTTATTTCGGTAACGGAAG----TTAGGTTTTATCCGGAAAGTTTTCTGTGTGTTTCTT----------------TATTCTAGTTCCGGTGTTT----------Tacattttg------------cagtttttccaaaaaatagaaagttcTCATTAGTTTATGTGTCATGTGTAGTAGTCTATATTTATTAAGATTC---TACATCGGCTAAGTTGACAACATAATT-----------------AGTCTATTTCTATTCTTCATT-------
i caeRem4.Crem_Contig0  I 83 C 0
s caeSp111.Scaffold630  5695976 160 + 20921866 ---TATCC-------------------------------------------AGAAGTTGTgt------gactatttttttaatcta-----------------cAAGCGAGTCAGgctgttt--------------ttttaaaga--------caGAACTTGCCATGATTAGC-------------TTTATTTGCAAACAA----------------TTTGGGTTA---AGCACT------CTTCTCAATGCACTTA------------ACACGGActgtatttctttttcacccGTTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1948838 185 +  4147112 ---GATCCTGGGT--TTTGTACATTGATATGAATCTTCCCAAAAAGATGTTTTGATTTATATCC----CACTAAACGTGTGAGTCA------------------AATCGATTCGCCCTCCTC--------------TTCTG-------------TGTATTAACCAAA---------------------TATATGACAGAAG----------------GTAGGGCTCTGTTGCACC------ACCATTATTGTcctt-------------------tctgattcatttcttcgttccttttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126  35 +   823664 I
e cb4.chrX              8668584 253 + 21540570 I

a score=-6509.000000
s ce10.chrX             3542340 108 + 17718866 GGAACAAGTAAAATTTCCTCATACATAAAATAGTGTTTCAGTCAATCAATAACATAAGATGGATTAGTTTCTATGCTGAGCCGTATAACCCTAGCCTAAAATGACACA
s caeRem4.Crem_Contig0   650378  55 -  4500979 ------------------------------TAGTAAGTGAGCC-----TTTATTTCTTATATTT---------GGCTGAACAACTTACCCCTATCCCAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5696136  39 + 20921866 --------------------------------------TTGCC-----ATAACTAAATAGGTAT---------TGTGACGTTACATACTCA-----------------
i caeSp111.Scaffold630  C 0 I 2
e caePb3.Scfld02_0      1949023   0 +  4147112 C
e caeJap4.Scaffold18194   60126  35 +   823664 I
e cb4.chrX              8668584 253 + 21540570 I

a score=-1485.000000
s ce10.chrX             3542448 29 + 17718866 ACGTTTTCTCCTTCGTTGCCGTTTATGAA
s caeRem4.Crem_Contig0   650433 16 -  4500979 -TTTTCTCATCTACTCT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5696177 29 + 20921866 CATTATTTATCCATTTTGCTTATATCTCA
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      1949023 29 +  4147112 acttttttactCTTGTTGTTACTAACCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I
e cb4.chrX              8668584 253 + 21540570 I

a score=-5173.000000
s ce10.chrX             3542477 28 + 17718866 TCATTTTTCTCTCTCAATTCTCCTTCTA
s cb4.chrX              8668837 25 + 21540570 ccttcttttcct---tcttttctttccc
i cb4.chrX              I 253 C 0
s caeRem4.Crem_Contig0   650449 25 -  4500979 TCACTTTTCTGT---GCTACACTCTtcc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5696206 25 + 20921866 TCGTCGTTATTT---AATGTACATTTTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1949052 10 +  4147112 CTAT------------ATGTAC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   60126 35 +   823664 I

a score=136982.000000
s ce10.chrX             3542505 355 + 17718866 TTGCTGTTCC----------------AATTAGTATAGTTTCA----CTCAGATGGAAAGTCAAAATCGAAGAATCAAGCTCAATCTACACAAATATAAAACGGCCGGAGTCCAGCAGTACAGCATTGACAAGATGTCA---GACGAGGATGCAGACGAGTATGACGATCAATCATCGAGTAAGTTGCTTTGTTGCAAACCTGAATGCTCCAGATGTTTG--CTATTGTTATTATGACTATATATC---TGATTTTTTCCAGTATCGTCAGTGTCG---GACGACGACGACTTCTCAGGCTCCGAGTCGGAAAGCTATCAGGACACGACTGAATCC------ACTGGACCTTCGGAAGCTACAACTGACGAGATGCTGTGGGGAAGGTGAG--------------------TT
s cb4.chrX              8668862 321 + 21540570 tAGTTG--------------------GAGTTAAACCATTCCCAAATTCCAGATGAATAACCAAAATCAACGTATCCAACTCAATCTACACAAGTACAAGACGGCTGGTGTTCAGCAGTTTGACATCGATAAGTCTTCA---GACGAGGAGTTCGACG---ATGACGATCAATCATCTCGTAAGTC--------AACATCC---CGAAACCAGATGGTTA--C-----------------GTAATC---TCGCCTTTTTCAGTGTCGTCGATCTCG------GAAGATGATTTCTCGGATTCGGAGTCAGGCAGCTATCAGGACACAACAGTCTCG------ACCACGCCTTCGGAAGCGACGACTGATGAGATGCTGTGGGGAAGGTGAG--------------------CG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   650474 320 -  4500979 caat-----------------------attcaattttttttttcagtaagaaTGCATAACCAAAACCAGAGGATTCAGCTTAACCTTCACAAGTACAAAACGGCTGGAGTCCAACAGTTCAGCATCGACAAATCGTCG---GATGAGGAGTTC---------GATGATCAATCATCTCGTGAGTCACTTCAGAAACATGCATATGGGACCATATGGTTA--t-----------------tttatc---tga---ttttcagtGTCGTCAATCTCG------GAGGACGATTTCTCAGACTCAGAGTCAGGAAGCTATCAAGACACGACGTTATCG------ACTAATCCTTCTGAAGCAACGACGGACGAGATGTTATGGGGAAGGTACG--------------------TT
i caeRem4.Crem_Contig0  C 0 I 2538
s caeSp111.Scaffold630  5696231 338 + 20921866 TTGC------------------------TTAAACATGTTTTT----TGCAGATGAATAACCCAAACCAGAGAATCAAACTCAACCTTCACAAATACAAAACAGCCGGAGTTCAGCAGTACAGTATCGACAAGATGTCT---GACGACGATGCTGACGACTATGACGATCAATCATCTTGTAAGTCACCCTGTCCTAATCCAC-TCTGACCATACa------------------------tatgtt---tca---ttttcagtgtctTCAGTATCG------GACGACGACTTCTCGGGATCTGAGTCAGAAAGCTTCCAAGACACAACCATTTCT------ACCGGACCTTCTGAGACAACAACTGATGAGATGCTGTGGGACAGGTTAGTGATATTCTGatgaaatagttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1949062 294 +  4147112 -------------------------------------TTTTT----TGCAGATG---------GACCAAAGAATCAAGCTTAACTTGCACAAGTACAAAACCGCTGGAATGCAGCAGTTTAACATTGATAGACTGTCTGACGACGACGATGCTGACGATTATGACGATCAATCATCACGTAAGTCTC----------TCCAG-AAGGACCATATGGTAA--C-----------------TATATCTgatca---tttttagtttcatcTGTTTCG------GACGACGAGTTCTCGGAATCTGAGTC---CAGCTATCAAGACACAACAGGATCG------ACTGGCCCATCGGAGGCAACAACTGATGAGATGCAGTGGGAAAGGTACG--------------------tc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  784023 344 -   823664 ------TTTCTTTTCTAAATAATATTttctcaagtttttttt----ttcagaaaatgaac---AACCAACggataaaattgaatttacacAAATACAAAACGGCTGGCATCCAGCAGTACAGCATCGATAAACTATCAGACGACGATGATGATGACGATTATGACGACCAATCTTCTTGTATGTT------------TTTGATGTGCATTAAATCACTaatc-----------------tttttt---taa---tatttagtGTCTTCTCATtctgacgacgacgacgagtTTTCGGGATCAGAGTCGGAGAGTTATCAAGACACCACCGGCTCCACGGGAACCGGGCACTCGGAAGCCACGACTGATGAAATTCTTTGGGGACCGTaag--------------------tc
i caeJap4.Scaffold18194 I 24859 C 0

a score=2664.000000
s ce10.chrX             3542860 4 + 17718866 CTTT
s cb4.chrX              8669183 4 + 21540570 TTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5696569 4 + 20921866 tctt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1949356 4 +  4147112 tttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  784367 4 -   823664 tttt
i caeJap4.Scaffold18194 C 0 I 5295
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=546.000000
s ce10.chrX             3542864 1 + 17718866 T
s cb4.chrX              8669187 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5696573 1 + 20921866 t
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1949360 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 4122
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=-2001.000000
s ce10.chrX             3542865 17 + 17718866 AAATGTTTTCAAAAGTT---
s cb4.chrX              8669188 17 + 21540570 ---TGAGCTTTGTAGTAGCT
i cb4.chrX              C 0 I 2485
s caeSp111.Scaffold630  5696575 17 + 20921866 aaatgaa-tacACAATTG--
i caeSp111.Scaffold630  I 1 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=457.000000
s ce10.chrX             3542882 48 + 17718866 GATATTA----------GATACTTTTGAAAAAATGTGCTGAAAATTATAAAACGTATT
s caeSp111.Scaffold630  5696592 57 + 20921866 TTTGTTATTCGTTctatgaaaattttgagaccATGC-CCAAAAACTATGATACTTTTT
i caeSp111.Scaffold630  C 0 I 2629
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e cb4.chrX              8669205 2485 + 21540570 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=0.000000
s ce10.chrX             3542930 758 + 17718866  
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e cb4.chrX              8669205 2485 + 21540570 I
e caeSp111.Scaffold630  5696649 2629 + 20921866 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=3616.000000
s ce10.chrX             3543688 293 + 17718866 CGCCCAATAAGAACATTTATTTTCACATTTGAAATGA------CAGAAACGCGTAGTAGTATTTGAGTCGGTATCACTGACCTGATTCATCCACTT--AAATGCCCATTTTC-GTCGTCAAATGTTTGCTTAAAAATATCCGCGCCTTTTCAAGTGAATCAATTGAACTTCTCTCAAAGTTTTTCTTGTTTGGCGTGTATACAATGTCATGAACGCACAAGTTTTGGATTTCCGGCAATCGATCGATTGTTAAAGGCTACAATAGCATAGGTGATTATTAAACGAGTCCCTCTATAATTTCC
s cb4.chrX              8671690 255 + 21540570 CATCGAATGACACCATTTGTGTTCCCCTTAAAAATTAATATTGCAAACATTCA-AACAGTTTATTTGTCGGTACCATTGACTTGATGTGTCCACTTGAAAATCGCCATCGCCAAACTTCAGATGTTTGTTCACACAT---------TTCTCATG------AATTCAAGTCGTCC-----GTTCTCCTATTTCTCGTTTAAACGATACGATTAAC--------TTCTTCTTTCCGG---TCG-----TTGCCAGAAAC----------TAGGTGATTATTATCCAATCGTCTCTATAATTTCC
i cb4.chrX              I 2485 I 1076
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e caeSp111.Scaffold630  5696649 2629 + 20921866 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=0.000000
s ce10.chrX             3543981 997 + 17718866  
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e cb4.chrX              8671945 1076 + 21540570 I
e caeSp111.Scaffold630  5696649 2629 + 20921866 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=910.000000
s ce10.chrX             3544978 16 + 17718866 ATCTCAGTTACGCAAA
s caeSp111.Scaffold630  5699278 16 + 20921866 ATTTCACTTGCGCAAG
i caeSp111.Scaffold630  I 2629 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeJap4.Scaffold18194  784371 5295 -   823664 I
e cb4.chrX              8671945 1076 + 21540570 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=-2218.000000
s ce10.chrX             3544994 6 + 17718866 ----AAGTC--G
s caeSp111.Scaffold630  5699294 8 + 20921866 ----GGTTTCAA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18194  789666 6 -   823664 AAACAG------
i caeJap4.Scaffold18194 I 5295 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e cb4.chrX              8671945 1076 + 21540570 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=-6043.000000
s ce10.chrX             3545000  83 + 17718866 TCTCAAATTCTCT----CAAAGTTTATTTTTGAAACCACA------CACACT-------CACAAACCTTAATTGGAA------AAT-AGCCTATTAAACATTATCCA
s cb4.chrX              8673021  91 + 21540570 TCTCAACTccttcttatcaatttttttgtctctaaTTTCC------CACACC--TTGGAATCCAATTCTAATTGGCA------AAT--GACTCCTAAAAATTGTAAT
i cb4.chrX              I 1076 C 0
s caeSp111.Scaffold630  5699302  65 + 20921866 TCTCAAATGTTCC---------GTTCTCCTCTTCACTTTT------GACACT-------------CTCTAATTG--------------GATTATCGATCATTATACC
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold18194  789672 100 -   823664 TCTCAATTTCCCT----CACCACGTATTGTTGACACCTCCATAGTGCAAACTCATTTGAAACCCAATCAAATGGCAATAATCCAATTAGGCTCTT-ATTACCGTA--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeRem4.Crem_Contig0   650794 2538 -  4500979 I

a score=9531.000000
s ce10.chrX             3545083 159 + 17718866 CCCATTAGTGTCCAAT--TGCA-------CTTTCCTGTCTTTTCACCCCATCTCGTCAC-------------------------ACGCTCT---ACCTTCCAG---------CTATAATCCC--------CCTA--CTGAAATTGACGGTTGTCAGCAGGATACTGTCCAAACAAAATTGTTTTCACTCCCTAATTAGCTCATCTTT-----TCTGTACT
s cb4.chrX              8673112 173 + 21540570 CCAATTAAGATCCTAT--TCCA-------CACACCGAGCCTCCAACT-------------------------------------GTGACACCTAACCTTCCCGCACTTCTTCCCTTAATACCCGTATGGTcatattgaaaaattaccgGTTGTCAGTAGGCTCCTGTCTAAACATGTTTATTTGCGTTACC-AATTATGGCATCTCTGGAAATCCGTCCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   653332 162 -  4500979 CCAATTAGTCTCCAAT--TGCA--------------ATCCTCCACCTCTCCTTCTCCCC-------------------------ATGAC-----ACCTTTCTG---TTTCCCCCTTAATACC--------CATATTCTGAAATTACCGGTTGTCAGTAGGAAACTGTCTAAACAAGACTGTTTGTACACCC-AATTAGTCCATCTCTTGATATCCTCCCA
i caeRem4.Crem_Contig0  I 2538 I 1
s caeSp111.Scaffold630  5699368 210 + 20921866 TCACTCAGTGTCTAATA-TCCAACGTGTGCGTGTTTACGTGTCACCCCTTTTTCGCCCCCGTTTCCCAGGTGCACAATATTGttgtgtctgc--gtctcctcgATGATCCCTCTCTAATACCCATATGACCATA-ACAGAAATTGACGGTTGTCAGTAGTGTCTTGTCTAAACAACGTCGTTCATCTCCCC-AATTAgcccttcttt-----tttgtctc
i caeSp111.Scaffold630  I 1 I 55
s caeJap4.Scaffold18194  789772 149 -   823664 CCGGTCAGCCAGCCATCTCCCA-------CTGACACGGTTCTCACC--------------------------------------AAACCTA---GCCACCTCG----TCCTCGCctaatttc-------------tcgaaaatcatTGGTTGTCACGTGGCTCATGTACAAACAAATCAGTTTGTCTCCAC-AATTAGCTCATCTCT-----ATCTTGCT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I

a score=-8936.000000
s ce10.chrX             3545242 31 + 17718866 ---TAGCGAACACGTG---TCATTTGC----AATGT--------------------GCTGA-------------
s cb4.chrX              8673286 40 + 21540570 ---CCGTCAATAGGACACGTCTTCTGCCCAGACCATCC------------------TTTGG-------------
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0   653495 57 -  4500979 ---TGTACAACATGTTAT-TCTTCCCCTCCAACTGTCAACCCGAGCGGACCACTAGTCTGG-------------
i caeRem4.Crem_Contig0  I 1 I 1
s caeJap4.Scaffold18194  789921 55 -   823664 AATTCTGACACACGGACT-CATTTTCCTCTCACTCTCC------------------TCTTTTATTGTAGGAGGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I
e caeSp111.Scaffold630  5699578 55 + 20921866 I

a score=-1258.000000
s ce10.chrX             3545273 17 + 17718866 GAATGTGCATTG--ATACT
s cb4.chrX              8673327 19 + 21540570 AACCTTGCGCAATGGTGTT
i cb4.chrX              I 1 I 21
s caeRem4.Crem_Contig0   653553 17 -  4500979 AACATTGCGTAA--ACGCA
i caeRem4.Crem_Contig0  I 1 I 13
s caeSp111.Scaffold630  5699633 17 + 20921866 GTGCGTGCGCGA--ATGTG
i caeSp111.Scaffold630  I 55 C 0
s caeJap4.Scaffold18194  789976 17 -   823664 GAAAGTACGATA--CGGTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1949361 4122 +  4147112 I

a score=-40408.000000
s ce10.chrX             3545290 383 + 17718866  
s cb4.chrX              8673367 402 + 21540570  
i cb4.chrX              I 21 I 29
s caeRem4.Crem_Contig0   653583 387 -  4500979  
i caeRem4.Crem_Contig0  I 13 I 4
s caeSp111.Scaffold630  5699650 380 + 20921866  
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      1953483 410 +  4147112  
i caePb3.Scfld02_0      I 4122 I 4
s caeJap4.Scaffold18194  789993 431 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7326.000000
s ce10.chrX             3545673 17 + 17718866 TGGCA-----AATGAACGACAC------
s caeRem4.Crem_Contig0   653974 13 -  4500979 AAGTG---ATCGTGGA------------
i caeRem4.Crem_Contig0  I 4 I 9
s caeSp111.Scaffold630  5700034 16 + 20921866 AAATGAGAATAGTGGA------------
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      1953897 11 +  4147112 CCGCA-----ACTGGA------------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194  790424 17 -   823664 -----TGGGCATTGAA------CGCAAT
i caeJap4.Scaffold18194 C 0 I 9
e cb4.chrX              8673769 29 + 21540570 I

a score=65193.000000
s ce10.chrX             3545690 124 + 17718866 AAGGAGATGTACTCGCAAATTCGGCGGGGAGACGACTCATCATTTCGATCACGTGACAGAT---TTGTTCCACCAAGAAGACCAAGGATGGGATACGGAT---CCAGCGATCTTTCAGCTATTGAGGTAA
s cb4.chrX              8673798 122 + 21540570 AGAGAGATGTACTCGCAGATTCGTCGTGGAGATGGTACACAATTCCGGCCCCGCGAGAAGT---TTGTTCCACCAAGAAGACCACGTATGGGTCATGGATCGT---GTGATTTGTCAGCTATTGAGGT--
i cb4.chrX              I 29 I 1
s caeRem4.Crem_Contig0   653996 127 -  4500979 CGAGATATGTACTCTCAGATCCGTCGCGGAGATGAGTCGCAGTTCCGCCCTCGTGACAAGT---TCATTCCACCAAGAAGACCAAGAATGGGGCATGgatctttcggcgatctttcggcgatTGAGGTAA
i caeRem4.Crem_Contig0  I 9 I 53
s caeSp111.Scaffold630  5700050 124 + 20921866 ---GAGATGTACTCAGAAATTCGCCGTGGAGATGGATCTTCGTTCCGTTCACGTGAGAAGT---TCGTGCCGCCGAGAAGACCAAGAATGGGATACGGTGCTACCAGTGATCTTTCAGCTATTGAGGTAC
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      1953908 121 +  4147112 ------CTTTACTCACAAATCCGTAGAGGAGAAGGACCATCTTCCCGTCCACGCGACAAACCAGTTGTGCCGCGGAGATTTCCAAAGATGGGAGTCGGCT---CCAGCGATCTCTCGGCTATTGAGGTAA
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194  790450 121 -   823664 AAAGAAATGTACTCGCAAATTCGCAGATCTGACGATGCGTA---CCGGTCTCGCGACAGAT---TTGTGCCCACTAGAAAACCCAAATTAATGCACGGAG---CTCCAGATTTGTCTGCTATTCAGGTAA
i caeJap4.Scaffold18194 I 9 C 0

a score=1276.000000
s ce10.chrX             3545814 6 + 17718866 TGGTTT
s cb4.chrX              8673921 6 + 21540570 GGTTGT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5700179 6 + 20921866 AGATTT
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      1954041 6 +  4147112 GGGTTT
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194  790571 6 -   823664 TGTCTT
i caeJap4.Scaffold18194 C 0 I 232
e caeRem4.Crem_Contig0   654123 53 -  4500979 I

a score=-10285.000000
s ce10.chrX             3545820 66 + 17718866 CGTAGTCATTTTAAAATATCAGCGAAGTATTTCAAAGGTGTAGTAGCGCATTCTATAGTATTAAAA------
s cb4.chrX              8673927 51 + 21540570 GGGAGCTCATGGGAA---------GACTTTTATGAGGATATAACG------TTTATAACGTTGGAG------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5700185 21 + 20921866 CAGGGCCCACTAGAG-----------------------------------------------GGAATT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1954047 23 +  4147112 CAGAGCTAGCTTCA-------------------------------------------------GAATTAAAA
i caePb3.Scfld02_0      C 0 I 159
e caeJap4.Scaffold18194  790577 232 -   823664 I
e caeRem4.Crem_Contig0   654123 53 -  4500979 I

a score=-11899.000000
s ce10.chrX             3545886 198 + 17718866 AATGACCAAATATCATAGTAAAACTTTTCAAAATTTTTATGAAAGTCCTGTATTTTGTTACAAACGTTGGTAAATTCTCAGTTTTAGTTACTCTTTTCGTCGATCAAAAATAATTTTTCCA--TTCAGATTTTACGATCAATTTATGTTTTCAACATAAATATTCAAAAATTAGATTCGAACATGTTAAACCGCTATAGT
s cb4.chrX              8673978  56 + 21540570 ------------------------------------------------------------------------AACTGCCACCTGT--GT-----------------------ATGACTGCAGATGGCAGTTAGCCGTCCAGTA--------CAGCACTAAT---------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5700206 114 + 20921866 -------------------------------------------------GTGCTTAG-TATATACGTATCTTAACTGGGATGTTT--TTCCGCTTGTCATcaatgaatcaaaatgacTACCGTTTGTGATATGACAACCGGTA---------ATCACTGAT----------------------TATCTTATCACTCT---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1954070 159 +  4147112 I
e caeJap4.Scaffold18194  790577 232 -   823664 I
e caeRem4.Crem_Contig0   654123  53 -  4500979 I

a score=-20388.000000
s ce10.chrX             3546084 173 + 17718866 TTTCTCAAAAAATGGCAAAAAAATCAGTGATTGACACTTTTTGACTGTCAGTGGttttaa------tatgaaatttggtcattttgtactataaaagtggtttttaaca----actttcccactggcacttctctaTTAAAAAATTAGGAATCTTTATTATTCATGTAGTGATCTCGTGTCTT
s cb4.chrX              8674034  74 + 21540570 ------------------------------------CCTTTTA------AGGTGTTCTTC------------------------TG---GTACAGTATAGTT-----------ACTTCACCAC--TCG------------------------CCCTACTGTGTG---TGCGATACAGTATCTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5700320  86 + 20921866 ----TCG-----------------CAACAG-------------------AATTACTTTTC------------------------TGCATACAAAACGTGGGA---AAGA----ACCTTTAAAGA-ATA------------------------CTATATTATTTGCA-TATGGACAAGAGTTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1954229 150 +  4147112 TTTATCGGAAAACGATAGA-----CTACAGGCAAAACCTTTGAATATCTAATCAGTTTTCGTTGACTGTCAGTTTTGAATA-ATCGCATGTGaattgtgaga---aaaatgacaCTTTCCCACATGTA------------------------ACCTGTCATATGAAGTGTGAAGAGGGCACTT
i caePb3.Scfld02_0      I 159 C 0
e caeJap4.Scaffold18194  790577 232 -   823664 I
e caeRem4.Crem_Contig0   654123  53 -  4500979 I

a score=-45635.000000
s ce10.chrX             3546257 172 + 17718866 TCCTTCCGTTTATCATGAAAATAATAACATTGATAAAATGCACAATGCACAATT---------------------GAATATCTTATCGACAAC-----------TGTCAATATTCTAATTTT--CGCATATCAAATATGGGAAAATACT-------GTACGTAATAA--------------TAGTAAGAACAACGATTGGTAGATCTCGACTTTCCGA------------------------------AAAAACGA-----G
s cb4.chrX              8674108 185 + 21540570 -----CCGTt---------------------agtagttttca------aaaaaaaagacaggaA-----------GAATATCTTATCAAACATGCCAAACCACTCATCATTATTCAAATATCAACGCATATCAATTGTGAGAAAACATTCT---------ACCAAAATTG--ACTTACAAGTAGGAAGAAAATAGT-------ACTTTACTTTTGAAACGTGTGGaaaa---------agaaagttt-gaaatcga------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   654176 244 -  4500979 TTCTTCCGTTTATCATAA----ATCAATGTCAGTAACATACAGTAACGAtaaaaaacaaaggaaaacGACGACACAAATATCTTATCATTGTTGCAAA------Tgtcaatattcaaatttc--cgcATGTCAAATGTGGGAAAACGCTCTCGAA-GAAGGCAGAAAGTGGTACTATCAATTGGTTACCAAACAGTTC-----ACTTTCTGTTTCTgacgttttgagaaaaaagtattagAAAGTTGAGAAACTGATGACCA
i caeRem4.Crem_Contig0  I 53 C 0
s caeSp111.Scaffold630  5700406  69 + 20921866 ----------------------------------------------------------------------------------------------------------------CCCAATCCTC-------ATTGACTTGTAAAACAG---------------CAAAAATT------------TGGCTAGAGAGAAAA---------------TATACCAAGT---------------------------GAGAATGA-----A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1954379  87 +  4147112 ----------------------------------------------------------------------------------------------------------------CCCA-------------ATTGACAGTTAGAAGAGGTTCACACGTGTATACATAAA--------------TGGTGAAAGTAacga---------------ttcaaaaagtt----------------agagGGATGGGAAAATGA-----G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  790577 232 -   823664 I

a score=72409.000000
s ce10.chrX             3546429 203 + 17718866 AGAGGG---GAAAATTAAATTAATGAAGTGCGT-CTTGATGGTTATCTCTAG-----TTGCAGGAAATGTCTCCAATTCGTTCATCGACTTACTCC------AGCAGCAGCGAA---GCACACAGACTA---TCGTCTCTGCGTGCTCAAACTGAGTGGAAGCCTCAGCTCACTTCAACAACTACATCGTTTCAGGTTGG-----TATTTGGA--------------------------------------------------ACTCTATAAATTTTGA
s cb4.chrX              8674293 192 + 21540570 ----AGAGAGAAGATTCAATTAATTTGATCA---CATGATGGTTATCGCTTTTTG--TTGCAGGAAATGTCTCCGATTCGTTCA---AATTACTCT------AGCAGTAGTGAAGGTGGACATCGCAT------GTCGTTGCGTCAGCAATCCGAGTGGAAGCCTCAACTCACATCGACTACTACTTCTTTCCAGGTAAG---------------------------------------------------------------ACCCAACAAATTTTAG
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig0   654420 243 -  4500979 AAAGAAATAGAAGTTTAAATTAATGACGCCCGTTTTTGATGCTAATCTTATGTTAACTTGCAGGAAATGTCTCCGATTCGTTCATCGAATTACTCC------AGCAGCTGCGAAGGAGGGCCAAGACTG---TCGTCGTTGCGTGCGCAAACCGAGTGGAAGCCACAACTCACTTCCACTACTACTTCGTTCCAGGTAAGTACTCTAACGG-----------------CCTGAGCAAGCc----------aaaggagaaagaaaattaaTGAGTTTTGT
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold630  5700475 210 + 20921866 TAGggg----aaaattaaattgatGGCGACAGT-ATTGATGGTTATCTAAAG-----TTGCAGGAAATGTCTCCGATTCGTTCATCAACTTACTCA------AGCAGCAGCGAA---GGACCGAGAGTG---TCGTCGTTGCGTACTCAGTCAGAGTGGAAGCCACAATTGACTTCAACTACAATGTCTTTCCAGGTATT-----TATTAATT---------------ACTCAGCTGT-------------------------AATAAAtatcgttt--
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      1954466 211 +  4147112 TGAGAGagataaaaagaaattaatgGAGACAGT-ACTGATGCCTATCTAAAG-----TTACAGGAAATGTCTCCACTTCAGTCGTCAACCTACTCC------AGCAGCAGCGAA---GGGCCAAGAATG---TCGTCGTTCCGCAATCCTTCAGGCTGGAATCCACAGCATACTTCAACTACCACTTCGTTCCAGGTATG-----AAACAGAA---------------TATGAGC----------------------------AATAAAGATCTTAT--
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194  790809 266 -   823664 ---AAAATGGGGAATGAAATTGATGAAGATCGTGACTGATCTCTATCTCTAG-----TTGCAGGAAATGTCTCCAATTCGATCGTCATCTTTCTCCACGAATACCAGTAGTGAA---GTACCCCAAATGCTCTCGTCGACTCGCGCCCCAGCCGATTGGAAACCACAGCTCACATCAACCACCACTTCTTTCCAGGTACGTGCAGAATTGAGAAGACTAGAAGACTAGATAGAGCATGACATACATATATAAAACGTAGTAAAAGTTAATGAGCTGG--
i caeJap4.Scaffold18194 I 232 C 0

a score=-12924.000000
s ce10.chrX             3546632  54 + 17718866 ------------------------AAAACCAAATAA---------------------------TTTTCAGCCACTCAGCCCG------------ATGAACCATCATGATAAAGAAAA
s caeRem4.Crem_Contig0   654695  63 -  4500979 ------------------------ataaattactAA---------------------------TTTCCAGGCCTTGTCTCTGACTCCGATGACTCTCAACCACC---CGAAGGGAAC
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold630  5700688  39 + 20921866 ----------------------------------------------------------------tttcagccTCTGACTCCA-CACCG------TCCAAACAAC-------AGCAAC
i caeSp111.Scaffold630  I 3 I 1
s caePb3.Scfld02_0      1954682  47 +  4147112 ------------------------AGAAA-----AA---------------------------CTTTCAGCCATTGCTTCCG-CTTCG------TCCAAGCACC-------AGCAGC
i caePb3.Scfld02_0      I 5 I 17
s caeJap4.Scaffold18194  791075 102 -   823664 AAAACAAACACATACTaggcagaaaaaaaagtataaaagaaAATGTTGTAAATCTCTGGTTTTCTTGCAGCCACTAAGTCCA-CTTGA------CAAGGACGAT-------AGTGA-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8674485  61 + 21540570 I

a score=214229.000000
s ce10.chrX             3546686 558 + 17718866  
s cb4.chrX              8674546 549 + 21540570  
i cb4.chrX              I 61 C 0
s caeRem4.Crem_Contig0   654758 560 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5700728 537 + 20921866  
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1954746 552 +  4147112  
i caePb3.Scfld02_0      I 17 I 28
s caeJap4.Scaffold18194  791177 638 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7872.000000
s ce10.chrX             3547244 28 + 17718866 TTTTATCCGATTTTGGCAACGTTTCGAC
s cb4.chrX              8675095 10 + 21540570 ------------TT------GTTGGAGA
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   655318 13 -  4500979 ------------tt---gaagttgCGAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5701265 11 + 20921866 -----------------gaaaattcaaa
i caeSp111.Scaffold630  C 0 I 12
s caeJap4.Scaffold18194  791815  8 -   823664 ----------------TGGCAATG----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1955298 28 +  4147112 I

a score=3222.000000
s ce10.chrX             3547272 36 + 17718866 GGCATCGATAAAATTTAGTTTTATCTGATCTTTC--------AA
s cb4.chrX              8675121 34 + 21540570 GAACTGGCAGAAAT-CGCTCTTATCTGATTTT-T--------AG
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   655336 29 -  4500979 GGATTGGCA-------TCTCTTATCTGATCTTGG--------AA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5701288 36 + 20921866 ggaTAGAAATAAAAACCGCCTTATCTGATTTTCG--------AA
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      1955326 44 +  4147112 GACAGGAAAGAAATATGTTCTTATCtgatcttttctttcttcac
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18194  791823 36 -   823664 GGGAGAGGAAAGTTTTTGTGTTATCTGATCTGTC--------GA
i caeJap4.Scaffold18194 C 0 I 18

a score=4401.000000
s ce10.chrX             3547308 44 + 17718866 GGGGTGTAGGTGTAAAAGTTTCC----CGGTCACCTTGGCGTCCTCAA
s cb4.chrX              8675155 34 + 21540570 -------GGGTGCTAAAATG-------TTTTAACCTTGAATTGCCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   655365 39 -  4500979 -------AAGTGTTAAAACTGGCAACCTGTCAACCTTG--TCGTTTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5701324 35 + 20921866 -------AGGTGTTATATTCGGC----AAGTAACCTTG--TTGCCAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1955370 35 +  4147112 -------agGTGCTAAAACTAGC----AGGTGACCTTG--TTCCTAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  791859 18 -   823664 I

a score=190757.000000
s ce10.chrX             3547352 688 + 17718866  
s cb4.chrX              8675189 632 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   655404 653 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5701359 630 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1955405 588 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  791877 626 -   823664  
i caeJap4.Scaffold18194 I 18 I 666

a score=-6944.000000
s ce10.chrX             3548040 19 + 17718866 TCGGTTCGTT-TTCTTGTAG
s cb4.chrX              8675821 13 + 21540570 tt-ttGATCGGTCA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   656057  9 -  4500979 TT-----TCTGTTC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5701989 20 + 20921866 TTGTTCCGCTGTTCTAGTAG
i caeSp111.Scaffold630  C 0 I 483
s caePb3.Scfld02_0      1955993 18 +  4147112 ttgttcttcc-ttCT-GCAG
i caePb3.Scfld02_0      C 0 I 310
e caeJap4.Scaffold18194  792503 666 -   823664 I

a score=0.000000
s ce10.chrX             3548059 1 + 17718866 A
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e cb4.chrX              8675834 0 + 21540570 C
e caeSp111.Scaffold630  5702009 483 + 20921866 I
e caeRem4.Crem_Contig0   656066 0 -  4500979 C

a score=-349.000000
s ce10.chrX             3548060 60 + 17718866 GAACTGAAGCTTGTTCAGCCTGATGTGCAACAATGTTTAGCATATTGCTTTTACGATGCT------
s cb4.chrX              8675834 45 + 21540570 ------AACCTTTTGCAGCCT-ACGCGC--------------AATTTTTAGTGTGTTGCGAGTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   656066 39 -  4500979 ------TACCTTCTGCAGCGT-AGGTGC--------------TATTTCTGTTGTCATCCT------
i caeRem4.Crem_Contig0  C 0 I 32
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I

a score=-825.000000
s ce10.chrX             3548120 73 + 17718866 CAAATGCAAAATTAATCAAAATTGGTAGTACAAAAAACTACTATATTTCAAACTCTTTGAAAAGAACATAACC
s cb4.chrX              8675879 44 + 21540570 GAGAt----------tcgatttttgtagttttcattgTTATTGTGCTTC-------------------TCACC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I
e caeRem4.Crem_Contig0   656105 32 -  4500979 I

a score=-21441.000000
s ce10.chrX             3548193 519 + 17718866  
s cb4.chrX              8675923 270 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   656137 338 -  4500979  
i caeRem4.Crem_Contig0  I 32 I 38
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I

a score=-92.000000
s ce10.chrX             3548712 29 + 17718866 GCGAAAAATCAGTGCAAGACTAATAGAGA
s cb4.chrX              8676193 15 + 21540570 --------------CACGCTTATCAGAGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I
e caeRem4.Crem_Contig0   656475 38 -  4500979 I

a score=-6040.000000
s ce10.chrX             3548741 108 + 17718866 ACATATTGTTTTTGAGTAATAATC----TTTCTTACACAAAATCCAATGATTACTTTTCAACGTAACTTCAGTTGAAACACTAGAGCAATTTCAAATTTCAACTATTCCATT
s cb4.chrX              8676208  85 + 21540570 ACTCGCCATTTTTGA-TAAAAGTCGTAATGACCTGC---AACTCCATC--TAGCCATTCGGCTT------GGCTAATTTTGTT-------CTCTCGTTTCA--------TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   656513  76 -  4500979 -----ccatttc-------aattt----tgttcttt---catttca-----aattattcaactT----TGGGCGGAAACTGTGGGGTATACTCTAATTTAA--------CAA
i caeRem4.Crem_Contig0  I 38 C 0
e caePb3.Scfld02_0      1956011 310 +  4147112 I
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I

a score=-17037.000000
s ce10.chrX             3548849 144 + 17718866 CGCTTATCAGTT-----TCGTTTCATGATAA---GTGGTTTGCGACTCCTAAATTCAATTTTGTTCTTTCGTTTCGCATAGT--CTGTCGGAAACTGAC------TGTGCCAATGTTAATAATCA----CCCTCACTCTTCTTTGGCTCAAGTTTTTGATTTTT---------
s cb4.chrX              8676293 125 + 21540570 CTCTTCTCAATT-----TCG-GTTGTAAcga---gaaattag--------------------------aaatttcaagttgT--GAGTTTGAACTCAAGTTTCCATTCACTCACTCTGATTTTCGAGCTCaacgattttcattt-------ttct---atttctct-cttCCA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   656589  76 -  4500979 TTCTCCcaaat----------------------------------------------------------agttttgattttt--gagcttggAAGAAAG------------------------------CCAagatttctcttt-------ctctctgattTCTCTGATTTCT
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      1956321 145 +  4147112 CGCTTATCAGTCGATGATAA-GTCGTAATGACCTGCAACTAGTGACTCC--ATTTATGTTTCGTTCtttcgtttcaatttgttcaactTTGAGCGGAAATTGTGGGCGTCTTAGGttaac---------ccatttttcatctca-------atttttgattttt---------
i caePb3.Scfld02_0      I 310 I 48
e caeJap4.Scaffold18194  792503 666 -   823664 I
e caeSp111.Scaffold630  5702009 483 + 20921866 I

a score=19725.000000
s ce10.chrX             3548993 55 + 17718866 GA-TTCAAAATTCCTAACCTCGAACTGACCATCATCGAGTTATTG--TTGTCGATTTG
s cb4.chrX              8676422 47 + 21540570 GAGGAAAAGATCTAAGATT---GAGTGACCAACAGA--------GAGTTGTCAATTCA
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   656669 54 -  4500979 GA-TCCAAGATCCATGATG---GAGTGACCAACAGAAAAAGGTTGACTTGTCATTTCG
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5702492 54 + 20921866 GA-TCCAAGATCCATGATT---GAGTGACCAACACAAAAAGGTTGAGTTGTCAATTCG
i caeSp111.Scaffold630  I 483 C 0
s caePb3.Scfld02_0      1956514 54 +  4147112 gA-TCCAAGATCCATGATC---GAGTGACCAACACAAAAAGTTTGGGTTGTCAATTCG
i caePb3.Scfld02_0      I 48 C 0
e caeJap4.Scaffold18194  792503 666 -   823664 I

a score=189568.000000
s ce10.chrX             3549048 1215 + 17718866  
s cb4.chrX              8676469 1309 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   656723 1266 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold630  5702546 1256 + 20921866  
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      1956568 1233 +  4147112  
i caePb3.Scfld02_0      C 0 I 238
s caeJap4.Scaffold18194  793169 1261 -   823664  
i caeJap4.Scaffold18194 I 666 C 0

a score=-3565.000000
s ce10.chrX             3550263 15 + 17718866 -------ATAATTTTTTGTATT
s cb4.chrX              8677779  7 + 21540570 -------CTGAAAC--------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5703809 14 + 20921866 -------TTGATTTTCC-TATT
i caeSp111.Scaffold630  I 7 C 0
s caeJap4.Scaffold18194  794430 15 -   823664 TCATTTCTTGGTTTT-------
i caeJap4.Scaffold18194 C 0 I 245
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=-291.000000
s ce10.chrX             3550278 11 + 17718866 ACAGGTGAACC---
s cb4.chrX              8677786  9 + 21540570 --GGGTTAACA---
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold630  5703823 14 + 20921866 TAAGGTTAAAAATA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=-313.000000
s ce10.chrX             3550289 38 + 17718866 TGTGGGAAAATAATTAAAAATTACTCCTATAATGAAAA
s caeSp111.Scaffold630  5703837 38 + 20921866 AGAGGGAAATTTCCTAGTGACGTGATACatgatttcaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e cb4.chrX              8677795 21 + 21540570 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=-1355.000000
s ce10.chrX             3550327 68 + 17718866 -AAAAA----TTTTGGAAAGTGTTTTTTTTTAAATTTTCGAGTCAAAAATCGTTGAAAAATCAGG-TCTAAAAC--------------
s cb4.chrX              8677816 46 + 21540570 -aaaaa----taccgaaa------atctTTACTATTT-----------------TAGAAATGAAGTTCCAacac--------------
i cb4.chrX              I 21 C 0
s caeSp111.Scaffold630  5703875 72 + 20921866 gaaaaactcgtatggaaa--tgagattttttatgtttttca-------------tAGAAATCGAA-TCTGACACGCCATATTTGAAAC
i caeSp111.Scaffold630  C 0 I 81
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=-869.000000
s ce10.chrX             3550395 313 + 17718866 TTTATTCGGAAGTCA-----TCAATCAAACAA-------ATTTTTACACCCAATTTTTATAGTCTAATCATGTTTTAAATATTGATATTCAAACATTGTAAAAATTCGAGCATACGACAGTGCTATAGATTTTTCAAAAAGTGACAAAAAAAACAGTAATTGCCACTTTCTGACTGCCTGtgtttgaaatatgaaatttgata-attttagcat--------cataaaagtggttt------taacaacttctcca---------ctggcgctactcc-------acctttaaaaaat---tatgAGA---AAATTTCACCTAAATCTGCAAATTTCGTAAGATTTACCAAAAACCTTCTGA
s cb4.chrX              8677862 311 + 21540570 ttt-----gaaatcaaaatcccGATCAAATAAttactggattttt--------ttttcggaattcgagattttttggaCTAT---------AATTTGTCAAAAGAGcgagaaaac-------------attttcttgcgGGTCTCGAACGAAACTCCTGTCACTATTTTTTGGC-----GTTTATGAAATCTG---TTTGTCACATTTTTGCGTTTCTGGGATGTGAAAAAGGTTTccgaaatatcaaatttttgaaaatcggagttTTCGACACTCCGAATAAgacattccgaacatccctgcgAGATTGGAAAtctacagaatttttcgaattttctaattttt--------ctctctga
i cb4.chrX              C 0 I 120
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e caeSp111.Scaffold630  5703947  81 + 20921866 I
e caeRem4.Crem_Contig0   657989  62 -  4500979 I

a score=0.000000
s ce10.chrX             3550708 94 + 17718866 GGCTAAAACGGATTTTATTGTCTATACACTCATTTCCAACTGATTTTATGTGAAATTCCAGGAAAGGAACTTTTAATACTGATTGGAAAGTTGC
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e cb4.chrX              8678173 120 + 21540570 I
e caeSp111.Scaffold630  5703947 81 + 20921866 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=126.000000
s ce10.chrX             3550802 25 + 17718866 CGTGCGTGGGT-----ATTACCAATAACTG
s cb4.chrX              8678293 26 + 21540570 CATGCGTGGCCCCCCGATTACCAG----AG
i cb4.chrX              I 120 C 0
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e caeSp111.Scaffold630  5703947 81 + 20921866 I
e caeRem4.Crem_Contig0   657989 62 -  4500979 I

a score=-3880.000000
s ce10.chrX             3550827 138 + 17718866 AAAAAGTTGTGTTTTATGAGATA---ATG-TTAGAA-----------------AAAATAGTTTTTATGCGTTTCACATTTACCTTGTATTTATCGAATTTGACATGCGAT-CGCTT--------TGGA---GCACTTGGAGACCTTATTCCCACTTAGTTGTCGA-CACACA
s cb4.chrX              8678319 147 + 21540570 AGAAAATTATGATATCCACATTTTATGTGATTGCCTTTCCATTCCACACCCACAAAcccttttttttattcctc-----------------aTCGAGAGCGCCATTCGTTTCTCAA--------CGAACCCAAAGCCTGGTGACATATTTCGACAAAAATAAAAGCAGCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658051 144 -  4500979 aaaaaatggagattttcgagaaatacATG-TTGACT-----------------AAATTGGttattttatggttt---------ttgctgaaattaaaaCCGACATGCGATACGCAGAATTTCTTCAAACCAGCACGTTGATAGCTCATTCCGACCTCATTTGAAG-AGCGAA
i caeRem4.Crem_Contig0  I 62 C 0
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I
e caeSp111.Scaffold630  5703947  81 + 20921866 I

a score=-4281.000000
s ce10.chrX             3550965 20 + 17718866 AAGTCGGC---ATAATTCGAACC
s cb4.chrX              8678466  3 + 21540570 -----AAA---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658195 16 -  4500979 -----CACTGCAT-ATTCGCAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704028 22 + 20921866 AAGTCGACTTCCTAATTTGTAC-
i caeSp111.Scaffold630  I 81 C 0
e caePb3.Scfld02_0      1957801 238 +  4147112 I
e caeJap4.Scaffold18194  794445 245 -   823664 I

a score=48971.000000
s ce10.chrX             3550985 104 + 17718866 TATGCTATTCTGCATCAAGCGGCCTAACTGCTGCATCCTTTCGATTATCGCAACGTGTCTACCGAGTTGTCTACGTCGGCAAAGTATGTTAAAATGGCTCTCCA
s cb4.chrX              8678469  87 + 21540570 -ATGCTATACTGTTTCAAAGGGTTTA------GCCTACGATCTCGTATCGCAACATGGCTACCAGCGTGTCTACGTCGACAAAGT--------A-AGCTCT-CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658211  96 -  4500979 TATGCTGTTTTGTTTCAAAGGACCTA------GTCTTAGGTCTATTATCGCATCGTGTCTACCAAGTTGTCTACGTCGACAAAGTATGTTTCAA-AGCTCT-CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704050  96 + 20921866 TATGCTGTTTTGCTTCAAGGGGCCAA------GCCTTTGGTCTATTATCATATCGTGTCTACCGAGTTGTCTACGTCGACAAAGTATGtttcaa-agctct-ca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958039  96 +  4147112 TATGCTATTCTGTTTCAAAGGACCAC------CGCTTTTATTAATTATCGCATCGTGTCTACCAAGTTGTCTACGTCGACAAAGTATGTTTCAA-AGCTCT-CA
i caePb3.Scfld02_0      I 238 C 0
e caeJap4.Scaffold18194  794445 245 -   823664 I

a score=65733.000000
s ce10.chrX             3551089 138 + 17718866 AAATCACTGTTTGTCATGTGTTCAT-AGTGTACTTGCGAGGTTTGATTAGTAC-TTTTGACAGGGCGGACACGGTTGCGATGAGGTGAGAAAC-----------TGACGGTTT----------TCCATCATTTGACTA--------CTGCCGA---GTTTTCT-------------CTTGCTCTA
s cb4.chrX              8678556 135 + 21540570 AAATTAGTGTTTGTCATGTGTTCATAAGTTTACTTGCGAGGTTTGATTAGTGCTTTTCGACA-TACACACACA--------TAGGTGAGAACC------------GACAGTTTAGTTGTACTTGTTAACATTTAACAA--------TGTCGCT---TTTATCG-------------TGgg-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658307 109 -  4500979 AAATCACTGTTTGTCATGTGTTCAT-AGTTTACTCGCGAGGTTTGATTAGTAC-TTTCGAC---------------------AGGTGAGAAAC------------GACAGTTT-----------------TGTGACTA--------CAtcgtt---ttttcct-------------tttgtttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704146 107 + 20921866 aaatcactttttgtcaTGTGTTCAT-AGTTTACTCGCGAGGTTTGATTAGTAC-TTTCGAC---------------------AGGTGAGAAAC------------GACAGTTT-----------------TGTGACTA--------CATCgag-----tattt-------------tttgtttta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958135 104 +  4147112 AAATCACTGTTTGTCATGTGTTCAT-AGTTTACTCGCGAGGTTTGATTAGTAC-TTTCGAC---------------------AGGTGAGAAAC------------GACAGTTT-----------------GGTGACTa--------cattgag--------tt-------------tttgtttta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  794690 145 -   823664 AAATCACTGTTTGTCCTGTGTTCAC-AGTTTACTCGCGAGGTTTGATTAGTAC-TCTTAGC---------------------AGGTGAGAAGCATTAGTCGAAGCAGCAGTTT-----------------TGTGACGAAATGGGTTTGTCAAGAAAGTTACTTGAAAATTTGCCGACTGGCTTTA
i caeJap4.Scaffold18194 I 245 I 22

a score=-14657.000000
s ce10.chrX             3551227 45 + 17718866 AATGT--TTTTGACC-----------------------------AATTTTGTT-------------------GGGGATGTGTGACATATCACACT
s cb4.chrX              8678691 48 + 21540570 --------------------------------------tcaaaaaaattggcg----atTATCGAAACAA---CACATCTATGATAACTcttc--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658416 74 -  4500979 ctttt--CCTTAACACT----------TCCCA------TCAGCAGTTTTAGCTTAGCAGTGTAGAGAGAGGTCAAgatgtttgaaaaatctt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704253 73 + 20921866 cttGCCCCCTTAACACTATTTTAACT-TCCCGCTTCTTT-----AGATGAGCT------------TAGAGGTCAGGATGTGTTGAAAGTCT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958239 77 +  4147112 cttgT--TCTTAACACTATCTTCCCTCTCTTACTCCATTTTAAGGGTTTAGCT------------TAGAGGTCAGGATGTATAGAAAATCT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  794835 22 -   823664 I

a score=51436.000000
s ce10.chrX             3551272 189 + 17718866 TTGCGCTATTTATCTTAATTCCCACCACATTG-----------------TCTCCA-----TGATTACACGCCTCTTATGGTATTAACTTTGTC--TC-TTATC----------AGAGAGCCCTC------GGTTTAT---GGAAACAGTGT---GAGGTGGAAGTGATGCCTA-GCCGTCAAC--CAAAATTGTTTATGAAG---CC----------------CCAGGTTTTTATTGTTTTT----AAAATTTATTTCCATC
s cb4.chrX              8678739 186 + 21540570 ---gat--tctttttttttc---------ttg-------gttcaaT---TCTCTCCACCACGATTACACACCTCTTAAAAGATTAACTTAGAT--TC-TTATC----------AGAGAGAGCCTTAGATAAGTGTAT--AGGAAACAGTTT---GAGAGAAAGGTGGTGATGATGGTTTTGGT-------CTGTTTATGAGG---CC----------------gta---ttttattgttttc-----aaatttatttgcatc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658490 176 -  4500979 ---gattATCTTTGTCGTTT---------TTG-----------------TCTTTC-----CGATTACCCACCTCTTAAAGTATTAACTTATATACTC-TTATC----------AGAGAGGCCCT------AGCGTAT---GGAAACAGTTT---GAG-GTGGCGTATTGTCGA-GTTCTCGATGATTCAATTGTTTATGAGG---Cc----------------atg---ttttattgttttc-----gaaattatttgcATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704326 178 + 20921866 ---GGCTATCTAGTCGATTT---ACTGGACTG-----------------TGTCCC-----TGATTACACGCCTCTTAAAGTATTAACTTATAC--TC-TTATC----------AGAGAGACCCT------GGGGTAT---AGAAACAGTTTG--AAGAGCATTGTCTTGTCAA-GTCGTACCT--------TGTTTATGAGGCCTCC----------------TTG---TTTTATTGattcc----aaaatttatttgcATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958316 170 +  4147112 ---GGTTATCTAGTC------------GAATG-----------------TGTCCC-----TGATTACACGCCTCTTAAAGTATTAACTTATAT--TC-TTATC----------AGAGAGACCCT------GGTGTAT---GGAAACACTTTT--GAGGTGATTGTGTTGGCGA-GCTGTCGat--------tgtttatgagg---cc----------------ttg---ttttattgttttttgaagaaatttatttgcatc
i caePb3.Scfld02_0      C 0 I 101
s caeJap4.Scaffold18194  794857 220 -   823664 CTACGTCAACTAACTCAACATCCAGAGCACTGCGCCTCCTTTCTACCCGTTTCTC-----TGATTACA--CTTCTTATAGTATTAACTTTTAC--TCGTTAtcagaaaaagagagagaggc---------aAAGCATGGAAGAAACACTGTGCCACGGTTCTGGTTTGGTCGA-GACGTTTGG-------TTGTTTATGAGG---CCGtccgtgtgtgtgtgtgtg---tcttaCTGTTTTT-----GAACtgattt-----
i caeJap4.Scaffold18194 I 22 C 0

a score=-28051.000000
s ce10.chrX             3551461 123 + 17718866 GCGTTCGCTTCCCCTCACTCTTCATTCCCACGCCTGTTTTTGGAACAACACATCACTGCCACGCATTTTGTA-------------------------------TCGACCGATAGAAATGAGGGGATGC-ACAGTTTTTATTGAGGACAACTTTCT----
s cb4.chrX              8678925  74 + 21540570 --------------------tcttttt-----tcaatttcaagagagagggagagaggcTAGCTAT-----A-------------------------------CCGAACGA------------Cacgtttcaattttttttga--------ttat----
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   658666 112 -  4500979 --------------------TTATTCCCTGCGTTTATTTTTAGAAAGC---AGAGATATCAATCAT-----A-ACACCAAATCACTACAAATTTATGCATCACCCGACCAA-ACAATT-----CAtgctaaaattttgattta--------ttct----
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  5704504  79 + 20921866 ---------------------CGATTCAAACGTCTATTTTTGGACA-----ATAAATATCAAAACT-------------------------------------TCGACCGGCATACCA-----CATGCACTAAAATGTATCCA--------ACAT----
i caeSp111.Scaffold630  C 0 I 21
s caeJap4.Scaffold18194  795077 121 -   823664 ----gcatttttctttcctttctctGCAATTGTTTCCCTTTATAGCCGCACAGTTCTTTAATATGTTttgtatgcaaaaaaaag-------------------aaggacgGTAATAAg-----tatgcgtt--ttttttttgg--------gcatttGT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1958486 101 +  4147112 I

a score=2079.000000
s ce10.chrX             3551584 8 + 17718866 TTAGTTTC
s cb4.chrX              8679008 8 + 21540570 TCGATGTC
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   658787 4 -  4500979 TTGA----
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5704604 8 + 20921866 ttgatttc
i caeSp111.Scaffold630  I 21 C 0
s caePb3.Scfld02_0      1958587 8 +  4147112 tcaatttc
i caePb3.Scfld02_0      I 101 C 0
s caeJap4.Scaffold18194  795198 8 -   823664 TCATTTTC
i caeJap4.Scaffold18194 C 0 I 252

a score=-10193.000000
s ce10.chrX             3551592 22 + 17718866 C--TCTTTTTTTCACA---------ATTATTGC
s cb4.chrX              8679016 27 + 21540570 T--CT----TTTTCGATATTGCCACTTTTTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658791 15 -  4500979 -----------TTTGA-------ACACTTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704612 32 + 20921866 ccattcttctctttcatattttcatttttct-c
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958595 25 +  4147112 t--ttttgatttcccatACTAAAATTG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  795206 252 -   823664 I

a score=76216.000000
s ce10.chrX             3551614 293 + 17718866 ATG-ACATTTAGAGTTTC----CTATAA-------AATTCAG-GTTCTTA---------------CTTTCTTTGATTTTCTCGAT----------------------------------------------------------------------TTCCATCCA--TTAAACATTGTTC-----------------------------------------------------------AAAATACTTTTCTCA-----GTATTTTCAA---AACC--------------ACACAATGAGCGACGAAGAG---GTTGACATTGTTGAAGAGCAGTCCATGACGGATACGAAATTTCAACGACGTGGCAGTCTGATTCGCCGTACATGGAACAATACGAGCGCGAAAATTCGCGGACGATCGCTAACGTGTGTGGAAGAGCGTGAAGAGTGCAGACGTTG--------GTCTTCTTTTTCCTTATCA------
s cb4.chrX              8679043 343 + 21540570 ATa-gctttgaaattcaaaggtCTAGCATTTTGGCACTtttg-aacaacaaaaaaaatcatttctctttcttcgccatttt--------------------------------------------------------------------------------------------ttcttt----------------------------------tttcacaatttcaa-----------aaaactgttttgtcACACAGTTTTCGTCATTCTGATAATacacacactcacacacaATGAGTGACGAAGAAGATGTCGATACGCTTGAAGAACAGTCGAAAACCGACGACAAACCTCAGCGACGTGGCAGCTTTATTCGTCGGACATGGAACTCAACAAGCGCAAAAGTGCGAGGCCGATCTTTGACTTGTGTCGAGGAGCGGGATGAATGCAGACGTTGGTAGTGGTGTATTCTTTCTCCTGT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   658806 392 -  4500979 ATATTCGTTGACAGTCAAATTTCTAGAG-------ACTTCCATATTAACAAAAGTGCCTAATTATTTTTCCTTATTGTTTTCCAATGAGGA-------------ATATCTAAACAGT--ATTCGCAACTAACTC---------------------TCCTATCTA--TTGAAAACTCTTTCCG-----CCACAAATCGTTTTT---------CGTTTTACTTTTCCAATGActtt----aaaactgttttgtcA-----GTCTTACCAAGCTGATA--------------ACACAATGAGTGACGAAGAG---GTGGATACGGTTGAAGAACAGTCTAAAACGGACGACAAACTTCAACGACGTGGCAGTTTTATTCGTCGTACATGGAACTCGACGAGCGCGAAAATGCGTGGAAGATCGCTTACGTGTGTTGAAGAGCGGGAGGAGTGCAGACGttg--------gtcttcttcttcatatttc------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5704644 403 + 20921866 ata-ttctcgatttccat----ttcGAATGGGAAAACGCCta-aattcaa-------tcattt---tttgcttGTTTTATTCGAATAAGGAAAGGATTATTGGTAGATCCCAACATTTCATTTAACctttcatctctctctctctctttctcgcCCACCATCTACGTTGTCGTTTCTCCCCC--------------------------------CTCATTTTTCCGATGATACT----AAAAGTATTTTGTCA-----GTGTTGTCGAGCAGATA--------------ACACAATGAGTGACGAAGAG---GTCGATACGATCGAAGAACAATCAAGAACTGACGACAAACTGCAACGACGTGGCAGTTTCATTCGTCGTACATGGAACTCGACCAGCGCTAAAATGCGTGGAAGATCGCTTACATGTGTCGAAGAGCGGGATGAGTGCAGACGTTG--------GTCTCTTCTCCCCTTCTTA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958620 371 +  4147112 GTG-TCTTCAAAACACAC--------------AGAACGTCAA-ATTGACA-------TCatt--------ctcgctttttttcaatgagaa----------------------------gtTCAAAACCCCA-----------------------CGCCATTTA--TCACCATCTTTATTCCAAGTATATGAAACCGTTTATATATGAAACCGTTTCACTTTTTCGCCGTcgttttaaaaaagtgttttgtcA-----GTGTTGTCAAGCTGATA--------------ACACAATGAGTGACGAAGAG---GTCGATACGGTCGAAGAACAGTCCACAACTGACGACAAACTGCAACGTCGTGGCAGTTTCATTCGTCGTACATGGAACTCGACGAGCGCAAAAATGCGTGGAAGATCGCTTACGTGTGTCGAAGAGCGGGATGAGTGCAGACGTTG--------GtctcttctcttcgttttA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  795458 296 -   823664 ATC-GCATTTCGCTTTTC----CT-----------ATATCCG-ATTG----------TTGCTAGACtttttttGCGTGCCACGTATCCCAA----------------------------------------------------------------CGCTATTAA-----------------------------------------------CTTCTCAATTTT---------------TGACGTTCTTTTTCA--------TTCCTAA---GAGT--------------AAATTGCGACGGACGAAGAC---------ATTATGGAAGACAATTCCAAGAATGTTGAGAAGTTTCAACGATGTGGAAAGTTTATCCAAAAGACGTGGAATACGACTAGTCTCAAAATGCGAGGCAGGTCGCTGACGTGTGTCGAGGAATGGGATGAAAGCAGacgttt--------gtctttttttttttccttcttatCA
i caeJap4.Scaffold18194 I 252 I 36

a score=3199.000000
s ce10.chrX             3551907 72 + 17718866 CTGAGTCTCTTTTTCTCACGGTCTCTCTAAATCACCCGATCTTTCTCCTCCTTCTAGTGCTCCAAAAATAGA
s cb4.chrX              8679386 34 + 21540570 -------------T----------------ATCACT-----TT----AATGTCGTAgtattctaaaaataga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   659198 43 -  4500979 t--------tatct----------------acaact-----tttttctacgttTTAGTGATCCAGAAATAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5705047 46 + 20921866 G--------TTCTT----------------ATCACC--aaccttttcttcctcttagtagtcaaaaaataga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1958991 49 +  4147112 GT-------TTCTT----------------ATCACTAAAAACTTTTCCTTCCTTTaaagttctaaaaataga
i caePb3.Scfld02_0      C 0 I 52
e caeJap4.Scaffold18194  795754 36 -   823664 I

a score=-2097.000000
s ce10.chrX             3551979 12 + 17718866 CTTGATTCGAAA---
s cb4.chrX              8679420 12 + 21540570 ---aattaatGCTGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   659241 12 -  4500979 ---AATTATGAGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5705093  9 + 20921866 ---aatgcgTAG---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1959040 52 +  4147112 I
e caeJap4.Scaffold18194  795754 36 -   823664 I

a score=-1075.000000
s ce10.chrX             3551991 17 + 17718866 T------------ATCGTAGGTGTGAAAT
s cb4.chrX              8679433 11 + 21540570 -------------TTTTGAGGGGG-----
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5705102 29 + 20921866 TAAAGAGTGTATATTCATAGGTgtgaaat
i caeSp111.Scaffold630  C 0 I 1
e caePb3.Scfld02_0      1959040 52 +  4147112 I
e caeJap4.Scaffold18194  795754 36 -   823664 I
e caeRem4.Crem_Contig0   659253  0 -  4500979 C

a score=-3302.000000
s ce10.chrX             3552008 297 + 17718866 GTGGACAGTCGAAGGTCTTAGTACTTTGGGGTTTTCGATTAAAAGTTAAACGTGTGTGTATTTTGTATGAGCCATTTGAAAAATGACTCGGAATTCAAAAATAAAATTTGAAAACATTATAATATACACGTTTTTATGAGTTGCTTTAAAATGGTTTTATTTAGTTTTCAAAAAATTACTTATTTAATTCTAAAACCACTGAATTACTTACTAAAACCTCCCCAAAAATCGAAGTTCACAGTAAGACTTCTTAAACATTTTTAAAAACTTTATGGA-GGTCCAAATTTTAAATGGACA
s cb4.chrX              8679444 138 + 21540570 ----------GAAGGCTGTGATAC-------------------GGCTGGGCGCA---GCATTTTGATTAGGGTACTTCTGAAAT--------------AAGTAAGAT------ACGGCGTGCTA------GTTTTGCTAGTGGCTT----------------------------------------------------CTGGGTCACTGAT--------------------------------------------CGTCTTTAGA------ATGGACGAACTGGCTTTTGAATGGACG
i cb4.chrX              C 0 I 58
e caePb3.Scfld02_0      1959040  52 +  4147112 I
e caeJap4.Scaffold18194  795754  36 -   823664 I
e caeSp111.Scaffold630  5705131   1 + 20921866 I
e caeRem4.Crem_Contig0   659253   0 -  4500979 C

a score=0.000000
s ce10.chrX             3552305 121 + 17718866 GCAATAAAGGTTTCAGGCAATAATTGAGGTCCTTGGAATTTGTCTAATATACTTGAAAAATGAGTACAATTTTTCTACACTAGCTCTGAAACTCATAAACAATAAGACACTTATATTAATT
e caePb3.Scfld02_0      1959040  52 +  4147112 I
e caeJap4.Scaffold18194  795754  36 -   823664 I
e cb4.chrX              8679582  58 + 21540570 I
e caeSp111.Scaffold630  5705131   1 + 20921866 I
e caeRem4.Crem_Contig0   659253   0 -  4500979 C

a score=646.000000
s ce10.chrX             3552426 22 + 17718866 TGGAAATTTTTATTGAAAAACT
s caeJap4.Scaffold18194  795790 22 -   823664 tagaagctattagaaagaaatt
i caeJap4.Scaffold18194 I 36 C 0
e caePb3.Scfld02_0      1959040 52 +  4147112 I
e cb4.chrX              8679582 58 + 21540570 I
e caeSp111.Scaffold630  5705131  1 + 20921866 I
e caeRem4.Crem_Contig0   659253  0 -  4500979 C

a score=-829.000000
s ce10.chrX             3552448 1 + 17718866 -T
s caeRem4.Crem_Contig0   659253 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  795812 1 -   823664 a-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1959040 52 +  4147112 I
e cb4.chrX              8679582 58 + 21540570 I
e caeSp111.Scaffold630  5705131 1 + 20921866 I

a score=-3052.000000
s ce10.chrX             3552449 27 + 17718866 -------TATT-AA---AAAT-TCGAAT---AAAAATTTTGA
s cb4.chrX              8679640 25 + 21540570 -------TCTT-GG---GGGT-TGGAAT---GAAAA--GAAA
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   659254 32 -  4500979 -------TATT-AGTATGTGTGTaaaatgcggaaaa--aagc
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194  795813 35 -   823664 tagaaagtattcaa---aaat-tcaaac---aaaaatgttgT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1959040 52 +  4147112 I
e caeSp111.Scaffold630  5705131  1 + 20921866 I

a score=3002.000000
s ce10.chrX             3552476 8 + 17718866 AAGTTAAA
s cb4.chrX              8679665 8 + 21540570 GATCTAAA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   659286 8 -  4500979 aaactaga
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5705132 7 + 20921866 -aaataaa
i caeSp111.Scaffold630  I 1 I 1
s caeJap4.Scaffold18194  795848 8 -   823664 GATTTAAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1959040 52 +  4147112 I

a score=84073.000000
s ce10.chrX             3552484 207 + 17718866 ACAAAAATGGTTCAGCATAA---TC------AAA--CCTCAACTG-TACTTTCCT-ATTTAGGCGAGAACAACTCTGACGATGCGAAGAGCCTGAGTCCCGAACAATCGCCCACGGATCACCACTTCTTGTGTCCTGACGACAATGGAGGAGTCTACGGAGCAGGGCCCGCTCATAGTGCTATTAAAAAGGTGGGTTGATGAAAGTATGGTGTTCATTCA
s cb4.chrX              8679681 190 + 21540570 ----------TC-----TAACTTTT------TCAACCTttaacttttatttttctattacaggcgaGAACAACTCGGACGATGCAAAAAGTCTCAGCCCAGACAGATCTCCAAATGATCACAACTTTTTGTGTCCAGATGACAATGGAGGAGTCTATGGAGCCGGTCCAACACACAGTgctatcaaaaaagtgagtt---------ttttggattactgt
i cb4.chrX              I 8 I 345
s caeRem4.Crem_Contig0   659306 180 -  4500979 a-aaaGGTAATC-----TAG---TT------CCAATTTACaa----tgttttattatttcaggtgAGAACAACTCGGACGATGCAAAGAGTTTGAGCCCAGATCGGTCTCCAACTGACCACAACTTCTTGTGCCCAGATGACAACGGAGGTGTCTATGGAGCTGGTCCAGCACACAGTGCTCTCAAAAAGGT---------------------TTGCCCT
i caeRem4.Crem_Contig0  I 12 I 1
s caeSp111.Scaffold630  5705140 176 + 20921866 acaaagaggggt-----taa---tt------tca--gttcaa----tttcttttt-tttcaggcgaGAACAACTCCGATGATGCTAAAAGTTTGAGTCCGGACAGATCTCCAACAGATCACAACTTCCTTTGCCCAGACGACAATGGAGGTGTCTATGGAGCTGGTCCCACTCACAGTGCTATCAAGAAGGTTggtt-----------------------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1959092 206 +  4147112 ATGAGAAtagttttgaataa---ttgtttCACAA--CTTTAA----TTATATGGT-TTTCAGGCGAGAACAACTCGGATGATGCCAAGAGCTTGAGTCCAGACAGATCTCCAACTGATCACAACTTCCTTTGCCCAGATGACAATGGAGGTGTCTATGGAGCTGGTCCAGCTCACAGCGCTTTCAAGAAGGTGGGTTTTGGAAGATTTAGGAACTA----
i caePb3.Scfld02_0      I 52 C 0
s caeJap4.Scaffold18194  795856 165 -   823664 ------------------------------GCGA--ATAAAAAGG-TGTGCtttt-tttCAGGCGAAAATAACACGAATGACAGCAAAAGCCTGAGCCCCGAACGACTTCAA---GACCGACACTATTTGTGCTCGGACGACGCAGGCGGTGTCTACGGAGCTGGTCCGGCACACACTGCGTACAAGAAGGTTTGTG-----------------cactc-
i caeJap4.Scaffold18194 C 0 C 0

a score=-14741.000000
s ce10.chrX             3552691 85 + 17718866 ACTATTCATTGATACAAAACGGATGCTGTCTGACTTTGAGTTTGTTCTTTTATTTATTCT-------TTTTTTT---GTGCTTCAAAA---ACTCTTC
s caeRem4.Crem_Contig0   659487 47 -  4500979 AAA----------------------------------------ATTCGTTTTTAggtta--------tttttcc---atttctcaaaaaaaacttttc
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold630  5705316 31 + 20921866 -------------------------------------------attctttcttt-------------ttctttc-----------aaattcaatataT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1959298 96 +  4147112 AGACTTTATTG--ACCAGTTAGAAACAGTCGAGCTTGTCATTAACTCTTGCTTTGATTtctcacaacttttttcgcAGTTTCCCGAAATTGGCTTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  796021 23 -   823664 --------------------------------------------ttcattttt--------------ttttctc-------------aatgaTT----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8679871 345 + 21540570 I

a score=52657.000000
s ce10.chrX             3552776 152 + 17718866 ATGT--------------------------------A-------------ACAGCTTCCGGTT--------------------TTGCAGAGCTCGGTTCGTCGTGCAGCGTCGTTCACCTTTTCGCCGAAGC---ACTCATCCTCAAAGACCAACCTGCGCCAGCTGAACGGACGTGAGGAAGATAAAGAAAAGAAGCGTTTTCTGTGAGT--TTTTCTTTT
s cb4.chrX              8680216 121 + 21540570 ATGT-----------------------------------------------AAGCTTCCTATC-------------------ACTTCAGACCAACGTTCGCCGTGCCGCTTCGTTCACTTTCTCACCAAAGCAATCATCGTCGTCAAAAAGCAGCCTTCgtga------------------------ggaaaaaaaacgttttctgtAAGt-----------
i cb4.chrX              I 345 C 0
s caeRem4.Crem_Contig0   659536 146 -  4500979 atGT--------------------------------C-------------CATGCTTCCGGTT--------------------TTTCAGACCTCAGTTCGTCGTGCAGCTTCGTTCACCTTCTCACCAAAGC---CGTCATCTTCAAAGAGTAATCTGCGTCAACTGAACGG------Agaagatagagagaaaaaacgttttctgtgagt--tttcttcca
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5705347 162 + 20921866 ACAT--------------------------TTCACTC-------------Tatcatttc------------------ttcatattcCAGAACTCGGTTCGTCGTGCCGCTTCGTTCACTTTCTCGCCAAAGG---CATCATCTTCGAAGACCAACCTTCGTCATTTGAACGGACGTGAtgaagatagagaaaagaaacgtttCCTGTGagtcctttttttct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1959394 213 +  4147112 ATGTGGACTGCAAAATGTCTTGATAACAGATTTACCCTGGTCTTATTTGATATGATTCCAATAGAGATAtaaccattttgaaatttcagagctCTGTTCGTCGTGCTGCATCTTTCACTTTCTCACCAAAGC---CATCATCTTCAAAGAACAGCCTTCGGACACTGAACGG------CGAGGAGCGAGAGAAGAAGCGCTTCCTGTGAGTCCTTGATCCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  796044 133 -   823664 -------------------------------------------------------TTCTCGTC--------------------TTGCAGACTTCTGTTCGTCGGGCCGCATCGTTCACATTTTCGCCCAAAA---------ACTCCAAAACAAATCTGCGCCAACTGAATGTTCG---GGAAGAATCGGATAAGCGTCGCTTTCTGTAGGT--TTTTTGTTT
i caeJap4.Scaffold18194 C 0 I 1379

a score=14205.000000
s ce10.chrX             3552928 52 + 17718866 CTAGTTGCTT----AACTGCCATGGCTAATCAACTAGTCAATTAGGCA-CAATTTTC
s cb4.chrX              8680337 52 + 21540570 ttttttGCTC----ATCTAGC-GGGCTGATCAAAAAGTCAATTAGGCCGCTATTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   659682 55 -  4500979 ttttttgttcgaCTAACTAGT-CGACTgatcaaaaagtcaattaGACC-CAATTTGC
i caeRem4.Crem_Contig0  C 0 I 147
s caeSp111.Scaffold630  5705509 52 + 20921866 gtgttttctt---CACCTAGT-TGACCGatcaaaaagtcaattaGACC-TACTTTGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1959607 41 +  4147112 TTTTCTGCT---------------ACAGATCGAAAAGTCAATTAGACC-AAATTTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I

a score=1638.000000
s ce10.chrX             3552980 3 + 17718866 ATT
s cb4.chrX              8680389 3 + 21540570 ATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5705561 3 + 20921866 ATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1959648 3 +  4147112 ATT
i caePb3.Scfld02_0      C 0 I 108
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e caeRem4.Crem_Contig0   659737 147 -  4500979 I

a score=-1809.000000
s ce10.chrX             3552983 2 + 17718866 ---AA
s cb4.chrX              8680392 2 + 21540570 TT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5705564 2 + 20921866 -TA--
i caeSp111.Scaffold630  C 0 I 181
e caePb3.Scfld02_0      1959651 108 +  4147112 I
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e caeRem4.Crem_Contig0   659737 147 -  4500979 I

a score=-445.000000
s ce10.chrX             3552985 86 + 17718866 CTTACGAAGTGGTGCGTCGCATTCGTAGAACCGAAATTGATTCACGGAAAGGTTATGCCAGAAATATGATTTTATGTGGTTGTTCA
s cb4.chrX              8680394 71 + 21540570 CATCC-ATTTGG----------TCGTGAGGCCGACATTA---CGCGAACGGCATAGACCAGGaaaaaaaGCTGA-ATGACAATTTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1959651 108 +  4147112 I
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e caeSp111.Scaffold630  5705566 181 + 20921866 I
e caeRem4.Crem_Contig0   659737 147 -  4500979 I

a score=-3811.000000
s ce10.chrX             3553071 52 + 17718866 AGTTGATATCATTCTATAGAAAAAAGTTC-----GAAGTACGACAATGATATCACGT----
s cb4.chrX              8680465 61 + 21540570 AGTGCAAATTAAGGTTCTGTGGAGGTgttatttgaaattattgggatcattttttgttatt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1959759 46 +  4147112 AATTAAAATTAATG---------ggtgtc-----aaaaaaatgagagaagagcGTGATGG-
i caePb3.Scfld02_0      I 108 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e caeSp111.Scaffold630  5705566 181 + 20921866 I
e caeRem4.Crem_Contig0   659737 147 -  4500979 I

a score=-3562.000000
s ce10.chrX             3553123 19 + 17718866 G-----TAACTTGAAAATTATCAG-
s cb4.chrX              8680526 19 + 21540570 ------ataCTGGAGAAATTATTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   659884 12 -  4500979 -------------ATAGCTTGATGA
i caeRem4.Crem_Contig0  I 147 C 0
s caePb3.Scfld02_0      1959805 24 +  4147112 GTAAATGAGCTTGAGAATTATATA-
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e caeSp111.Scaffold630  5705566 181 + 20921866 I

a score=-6708.000000
s ce10.chrX             3553142 261 + 17718866 ---AGCATCTTTCACTGA-TTTATCATGAAAT-----CATA--AAATCATAGAAC--CGTTTAAAG----ATT-GCAAAATATT----------TCAAGAAATACTATAG----GTAGGACT------------------------------CTACTATCCCA--CCCCTACTTATTTTTTC---------------C-------AAATCTT---ACCCATTTTTTGACTGCCACACGCGAG---GG-----------CACCTACCTAAATGCACATTTGTTCGGGACTATTGGACCGTGAGCAGGTGT-----AGTGGGGTTTGATCGGCTAGTCTACAAAAGATAAA---AGAATA--------TTTTCTTT-TCGTGA
s cb4.chrX              8680545 299 + 21540570 GATCATTT-----------TTTGGTATTA--------TACAGCAAACACATACTTAGAGATTCTAG----ATA-CGCGGATTTTCAGTGATAAGCTTCCAGTTTCTTGAACCCTCTCCAATTC--CATCCAGGTAGAATGTTTTATAGATGATTTCTACCCCA--CCCATACTGCTTCTTCAT--------------T---------GTCTC-GATTCTATTTTGG--TTGCAACAAAAAACGTTAGGGT--------AGACCAACTAAATGTACAATTGTATGAGACAAGTGGTCCAT------GTGGAAATTAGTGAAGTTTGATCGTTTG---GGATGAGGGTTTAGAGAACATCAGG-----TTTTGATGA------
i cb4.chrX              C 0 I 319
s caeRem4.Crem_Contig0   659896 278 -  4500979 G-CGGCGT-----------TCTGGAATTAAGTGAGACtatagtagatcaaaaatt----attatat----aaT-GGGggatttt----------ttcacaattatttcAA-CCTGAACAACCT--TGTTC----------------------TTGCTGTTCAG--TCATTACTCGTTCTTCTT--------------T-------TAGTCTG-TAACCTATTTTTG--ACGGTGAATAGAGC---AGAGG--------CGGCCACCTAAATGCGCAATTGTTCGAGATTGTCGAACCGTAAGGGAGTGTAAATTAGTGGAGTTTGATCGGTTAGtcggaaaagaattga---atcaTCGGAAGAACTTTTGTAG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5705747 297 + 20921866 ---AGTATcttcaa-----ctcattttcaagcTAAG-AACAGTTGATCATAGATT--AGAATGTAGTAAAGTGAAGTGCAC-TT----------TTCACAATT-TTACAA-CCTGAACGACTCT-CATTT----------------------CTTGTACTCATTGCTCTTAgctattctttctctt-----------ccccCAGTTCATctc-aaactcattttct--acgggggggggggg---aga----------cGACCACCTAAATGCACAATTGTTTGAGACTATCGGACCGTGAGAAGGTGTAAATAAGTGAAGTTTGATCGGTTAGTCTGGAATGGATTGA---GTGGCAAACGGAGCCATTGTGT-------
i caeSp111.Scaffold630  I 181 C 0
s caePb3.Scfld02_0      1959832 314 +  4147112 ---AGTACCAGCTAGTGGTGTCGGTTTTAAATGGAT-CACAGTTGATCAGAGATT--AAAGTGTTG----GTG-AGTGCACATT----------TTCACAAGT-TTACAA-CCTGAATGAGTCCATCTAT----------------------CTTGTACTCAT--CCCTCagttattctttcttttcttccatttaGT-------TCAtcacaaaactcattttcttgcCGGCGGGAAGGGG---ACAGCTACCACCTCCACCAACTAAATGCACCATTGTTTGAGACTATCGGACCGTGAGAAGGTGTAAATTAGTGAAGTTTGATCGGCTCGTCTGGAATGGAGTGA---GTGGTACAACTAACGGTAGTCT-------
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I

a score=3765.000000
s ce10.chrX             3553403 12 + 17718866 A-GTGGATGTTCC
s caeRem4.Crem_Contig0   660174 12 -  4500979 A-GTTGGTGTTTC
i caeRem4.Crem_Contig0  C 0 I 268
s caeSp111.Scaffold630  5706044 13 + 20921866 AGGCTGATGTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960146 12 +  4147112 A-GTTGATGTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e cb4.chrX              8680844 319 + 21540570 I

a score=2447.000000
s ce10.chrX             3553415 20 + 17718866 GATCTCGATCACTAGAAGGA
s caeSp111.Scaffold630  5706057 20 + 20921866 AATTTCGGTCacctggaaaa
i caeSp111.Scaffold630  C 0 I 221
s caePb3.Scfld02_0      1960158 20 +  4147112 AACCTTGATCatttagaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e cb4.chrX              8680844 319 + 21540570 I
e caeRem4.Crem_Contig0   660186 268 -  4500979 I

a score=-8235.000000
s ce10.chrX             3553435 631 + 17718866  
s caePb3.Scfld02_0      1960178 277 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e cb4.chrX              8680844 319 + 21540570 I
e caeSp111.Scaffold630  5706077 221 + 20921866 I
e caeRem4.Crem_Contig0   660186 268 -  4500979 I

a score=91.000000
s ce10.chrX             3554066 1 + 17718866 T
s caeSp111.Scaffold630  5706298 1 + 20921866 T
i caeSp111.Scaffold630  I 221 C 0
e caePb3.Scfld02_0      1960455 0 +  4147112 C
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e cb4.chrX              8680844 319 + 21540570 I
e caeRem4.Crem_Contig0   660186 268 -  4500979 I

a score=6068.000000
s ce10.chrX             3554067 40 + 17718866 AAATACTTC----CTCTTATTTCTTTGCATCA---------GTGAATCTGTCG
s caeRem4.Crem_Contig0   660454 49 -  4500979 aaatgcttTTTCCATCTCATTTAATTCTATCC----ATCCAGTGCATTCATCT
i caeRem4.Crem_Contig0  I 268 C 0
s caeSp111.Scaffold630  5706299 53 + 20921866 GAAtgctttttccatttcatttggTTGCATCTATTGAGTCAGTGCATTCATCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960455 36 +  4147112 -------------AACTCATTTATTCTTGTCC----AGTCAGTGCATTCATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  796177 1379 -   823664 I
e cb4.chrX              8680844 319 + 21540570 I

a score=-2313.000000
s ce10.chrX             3554107 5 + 17718866 ---TGGGG
s caeRem4.Crem_Contig0   660503 2 -  4500979 ---AG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5706352 2 + 20921866 ---CG---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960491 2 +  4147112 ---AG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  797556 5 -   823664 TGCAA---
i caeJap4.Scaffold18194 I 1379 C 0
e cb4.chrX              8680844 319 + 21540570 I

a score=50052.000000
s ce10.chrX             3554112 246 + 17718866 GAACAAACGT---ACCAAACTG--AGATGGGCTTATTGTAGG--TTTTCCCCGTGTCTTTCACTTTTTTTTGCTCTCCCA--------------------TGTCATTTGCG---CATGCCC-----TTACGCTTCACATATCTGTCT---CCCCACT----CGCCCCC-TTCTTGAAGCCACTGCCGC--------CCCGCGGCCCCCTTGCATTTTCTGCCATTGTTG--CCCTCCACCTCCTCCTGTTTG------GGTGGGAGCAGC----------A-GAAGAACAAGGACATCCCTTTTT--GC----CTCTTC---AGA
s cb4.chrX              8681163 235 + 21540570 GAACAAGTGT---ACCGAATCA--AGATGTGTCTATTGTAgg--gctct-------------ttttttttgctccttccAGTTAGTACACCTAACCCCCCTGTTATCCACA----AC-TCT-----TAACGCTTCACGTA-----------TCCACT----CGCCCCCATTC----AG-----------------------------GCTACATTTGTTTCCATTGTGC--TTCTTCATCTCCT--TGTTTGCTGCTCTGAGGGAGCAGTCAGAGGCAAGT-GAAGAGAAAGGACATCCTCTCTC---C----CTCTTCAGAAGA
i cb4.chrX              I 319 C 0
s caeRem4.Crem_Contig0   660505 256 -  4500979 GACCAAACGT---ACCAAATCG--AGATGTGTCTATTGTAGC--TTTTTCATGG--------CtttttttGTCTCTCTAACATCGGGTGCCCTGTCACCCTG----CCAGA----ATGTCC-----GTACGCTTCATGTATCTGTCT----TCTACT----CGCCCCC-TTC----AACCGCCGCCGCGGTCC-CTTTTG-----CCGCTACATTTTCCGCTATTGTTG--CTCTCCACCTCC---TATTTG-------GTGGGAGCAGTCA---GCAACA-GAAGAATAAGGACATCCCTCCTC---CAGAGCTCTTc---aga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5706354 264 + 20921866 GAACAGACGT---ACCAAACCG--AAATGTGTCAATTGTAGAGTCTCTCTCAAT--------CCTTTTTTATCCCCTCCATTTTTAACATCCCGGTGCCCTGTGACCCGTG--CTGCGCCC-----TTACGCTTCATGTATCTGTCT----TCCAACTTGCCGCCCTA-TTC----AAGCCGAGACAAG-------CCAG-----CCTCTGCATTTCTCTCCATTGTCGGCTCCTCTACCTCC---TGTTTG-------GTGGGAGCAgcaaaaaatagga-aaacgGGAGGGACATCCCCCCTT--TC----CTCTTC---AGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960493 225 +  4147112 GAACAAACGT---ACCAAAACG--AAATGTGTCTATTGTAGG--CTTTCCGGAG--------GCTTTTTTATC----CCATTTCCAACAT-CTAGTGTCCTGTCACCCGTG---TGCGCCC-----TTACGCTTCACATATCTGT----------------CGCCCCC-TTC----AACTTGTG----------------------CTCCAT-TTTCCCGCCATTGTTA--CTCTCCACCTCC---AGTTTG-------GTGGGAGCAGCCTGGAGCAACATAGAGAGAAAGGACATCC---------C----CTCTtc---aga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  797561 263 -   823664 GAACAAACGTGGAGCAGAACCGCAAAATGTGTCTATTGTAGG--T-----------------TTTTTCTTCTCTCCGTGCGCCCTAACGT-TGGTTGGCTTGTCGTCGTCGCCCCACGCCCtttttttACGCTTCACATATCTGCCTGGCCGCCACT----CGTTCCC-CGC----GAGTCTGGCACTGCACTGCAAAAGCAGCTCTCCCATATTTTCCATCATTGTTG--CGCTCTACCTCA---TGTTTG-------GTGG------------ACCAAA-GTAGAA-AAGGACATCTCCTTTCCTTT----CTCTTC---AAA
i caeJap4.Scaffold18194 C 0 I 38

a score=10356.000000
s ce10.chrX             3554358 46 + 17718866 AACGAG-----GTTTGTGCTTCG-ACCCTCTCTCTCACTGGTTTTGCAAGTC-
s cb4.chrX              8681398 39 + 21540570 AACAAGAAGTTTTTCGCGCTCCT-CCCCA------------CTTTGCAAGTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   660761 35 -  4500979 aacaag----tttttttgctCCT-CCCCA------------CTCTGCAAGTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5706618 38 + 20921866 AGCAAG-----TTTTGTGCTCCTCCCCCATT----------CTCTGCAACTCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960718 36 +  4147112 aacaag-----ttttttgcTCCT-CCCCATC----------TTTTGCAACTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  797824 38 -   823664 I

a score=150600.000000
s ce10.chrX             3554404 322 + 17718866 TCGGTGC--GTAC--CG----------------------------------AGAAGGCCTG---GAA----------------CAAATCGTCCAAGTTTATTTTC----CGT------TTCTCTAC-----ATTCTTGTCTTTAATTATTCCTCCAAGCCAAAACAATCTGTCAACAATTAGCGG---TCGTCGCCAACAGGACG-----CGTCAACTGACA-----ACACATCT---------CATTTTTTTCTC---TAC----------AAAAAATGGATATTCGTCGAAAAATTAGTACGCCGGTTCCC---GTCAACGCGTCAAAGCGGTTCATCCACAAATGGGCTTCAGTCCGCGAGATGGAGTCGCTCGGTATCTCGCCGCCGTCGTTTTCACCAATCACGACGTCACACAGGCAAG--CCAATTT
s cb4.chrX              8681437 334 + 21540570 TCATTCGTGGCAC-------------------------------------CAGAAGCCCTACGTGCT------------TCTTCCAGC------GGCTTTTCTTC----TTCCAGCCATTTGCTCT-----ACGGCTGCC--TAATTATTC-----AGCCAAAACAATCTGTCATCAATTAGTGG----TCTCTTGGA------------CGCTAACAACTGTCTCAGCACTTTT-----TCTTCCTGCTTTCCTC-ATCACGA-------AGAAAAATGGATATTCGTCGGAAAATTAGTACGCCGGTTCCCCCAGTCAGCGTGTCAAAGCGGTTTATTCATAAATGGGCTTCAGTGCGAGAGATGGAATCGTTGGGCATCTCGCCGCCGTCTTTCACACCGATTGTTTCGTCTCACAGgcgagttttctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   660796 383 -  4500979 TCGTTCTTGGTACAGAGTTTTCGGAGAAGAAAC------cgacgaagaaaaagaaatcctACGTGAA------------GTTTTCGACATCCCAGGCTTCACTTC----CTCCGAccatttgcttt-----tttcttgtctttaaTTATTCTATAGAGCCAAAACAATCTGCCGTCAATTAGTGG---TTCTCTCAAATTCGACGCGAACTGCTAACAACCA----AGCACATCTACCACTCTCCGTTTTTTCctc-tctac-----------aaaaatggataTACGTCGGAAAATTAGTACGCCGGTTCCT---GCTAGCGCCTCAAAGCGATTTATCCACAAATGGGCTTCAGTACGAGAGATGGAGTCACTTGGCATCTCGCCACCGTCCTTCTCACCAATCACTTCGTCTCACAGGCAAG--CCAATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5706656 378 + 20921866 CTGTTTCTGGTAC--CGGGCttgaagaagga------------gaggaagaagaagtccTACGTGAG---------AGACTTTTGGACATTTCAGTCTTCACTTC----CTCCAGccatttgtgtttttttggtGCTGCCTCTAATTATTCTGTAGAGCCAAAACAATCTGTCACCAATTAGTTG--TGTGTGTCAATTTGGACATC---TAACTACGAGCACCATCGCACATtc----------ctttttccctcttctaC---------AAAAACATGGATATTCGTCGGAAAATTAGTACGCCGGTTCCT---GTCAGCGCCTCGAAGCGATTTATCCACAAATGGGCTTCAGTGCGCGAGATGGAGTCGCTTGGCATCTCGCCACCGTCTTTCGCTCCAATCACGTCGTCTCACAGGCAAG--CCAATTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1960754 346 +  4147112 ------------C--CATACTTGGAGGAG----------------------AGAAGTCCTACGTGAGGAGCGGCAAAAACTTCTGGACATCTCAGGCTTCACTTC----CTT--GCCATTCGTTTT-------------CTCTAATTATTCTGTCGAACCAAAACAATCTGTCATCAATTAGTGGC-CTTGTGTCAAATTGGGCACC---AACCAAGACACA----CGTCTATTC---------GCTTTTTTCCTC--CTAC---------AAAAACATGGATATTCGTCGAAAAATTAGTACGCCGGTTCCG---GCCAGCGCCTCCAAGAGATTTATCCACAAATGGGCCTCAGTGCGCGAGATGGAGTCGCTTGGCATCTCGCCACCATCTTTTGCTCCCGTCACGTCGTCTCACAGGCAAG--CCAATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  797862 358 -   823664 -------------------------------TCATTGCtcactgaagaaaaaaaaaaactt------------------tttttttgtgttcatTGGCTCTCTTCGACACCCTTGctgtttctttc--------tttcccCCTAATTATTCAATAGCACCCAAAGAATCGGCCATCAATTAGTGGCATTGGTCGCCGGAAAGAAAC----Gacacacagaca----cacacaTCT------TTGCACAACTTGCTCGTCTAGGACATTTCTGAAAATATGgatattcgtcgaaaaattagCACCCCTGTTCCC---GTCAGCGCTTCGAAACGATTTATTCACAAATGGTCCTCTGTTCGGGAGATGGAGTCGCTTGGCTTCTCACCACCTTCATTTGCGCCAATCTCACCGTCTCACAGGCAAG--CTGTTTT
i caeJap4.Scaffold18194 I 38 I 778

a score=-5553.000000
s ce10.chrX             3554726 65 + 17718866 T------------ATAAA-----------ACACATACTTCTA----TCTAGCTCAAACAAATCTCGTTATAATTGAATAATGTCGCAAAAAA--
s cb4.chrX              8681771 67 + 21540570 ttgattagaTTA-TCGGGTCGCGGAGCATGCATGTAGGTTTAT------------AAGTA----------AATCAAATTA--TTGCAAAACG--
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig0   661179 66 -  4500979 ATGATATGTGTG-TTAG------------ACATGTAGATGTATTA-TATACCTCCAAGTA----------AATTTAATAA--CTGCAAAACG--
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5707034 75 + 20921866 TATATATATCTG-ATATCTAGAG------ACACATATACACACACCCATATCTTATAGTA----------AATTGAATAA--Ctgcaagaaaga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1961100 67 +  4147112 CATATCAATTTATATATC-----------ACACATAGAGACA----CATACCTGATACTA----------AATTGAATAa--ctgcaaaaagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  798220 778 -   823664 I

a score=18958.000000
s ce10.chrX             3554791 111 + 17718866 -----------------ATTGGGCAGA-----TTTTTCCACTTTACGCATATTACCTA--TTTGCTCGGCCGGAACTTGATTTCCCCACCAGCTGTGAAGCTAAAACATATATATGTGC-GAAACCAACTTCTGAT
s caeRem4.Crem_Contig0   661250 124 -  4500979 -----TCAGAGCAACTCACCGCGACGACTCCTTATTTCCACTTCTTGAGCATTACCCA--TTTGCACGCTTCGAACT--ATTTCCT-CCTGATCTTCAAGTTTAGA-ATATATACGTGAAGAAGTCAAATTTCAT-
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5707109 122 + 20921866 aaaagtcagAGC-ATTCATAG---CGACaccttttttccacttcttgCGCATTACCTA--TTTGCACGCTTGGAACT--CCTTCCTACCTGATCTTCAAGCTAAGA-AA----ACGTGTAGAAGCCAAATTTCAT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1961167 122 +  4147112 agaagtcaAAGC-ACTC---------AcgctttttttccacttcttgcGCATTACCTAGTTTTGCACGCTTGGAACT--GCTTCCTACCTGATCTTCATACTGAGA-AATTATACgtgaagaaatcaaatttcat-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  798220 778 -   823664 I
e cb4.chrX              8681838  90 + 21540570 I

a score=-18248.000000
s ce10.chrX             3554902 215 + 17718866 TATCATTCTATAATGACATCTCTTGTTTCTCCATTACTCTCGTTTCCAGTCTATACGTATT-TTCTATGA---AACTTGCA---CCTAGGCCACATCAGCATGCCAGGTCCAAATCCAGGTTTG----------------------------TACTGTAGTAAT---------------------ATTTTGGAAATTTAAAGTTTTATTCAAGAATTTATTAAACAAC-----ATTTTGT-------ATGTTG-------------------------------------TATGTTT----CAAG---------------------------TAGGACCTACAACTCAATT---
s cb4.chrX              8681928 277 + 21540570 TATC-----ACTATGTTATCTTGTGCTCGTG----TGTCTTCTTACGATTTTCCAACTAGT--------A---GAACGGCACTACCAAGACCAAGTCATCATGTGCGGTCTCGTTCAAGGTGAG------------------------CTTCAATTGTAACTCTAACTGGACTTTAACGGTTTCgatatttctgttttt--ctttttttttaaagctcacACACCAAC-----A-ACCAA-------Tcgttcaaatattcaaatctag-----------------tctttctttttttaacaaaaacaCTTCCTGAAAAGAGAGTTTGTTGtttgttctgaaactttccaCT-
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   661374 223 -  4500979 TATCATT-TATTATGACATTGTTTGCTCCTG---ATCTATCGCTGCCAGTTT-CAACTAATTCTCCATGA---GACTTTCAATGACAAAACCAAATCCCCATCTTCGTTCGAAATCGAGGTGAG------------------------AATGTGTTCTAGTTCC---------------GTTTTCACatctata---------acttttttaatACCAATTGATTTAC-----A-ATTAA-------GTGTTGA-----------------------------------CTGTTCTTTTATCGGA---------------------------TTGGTTATAAAACTATGTAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5707231 285 + 20921866 TATCATT-TATTATGTCATTTCCCCTTTTTG---GTGTCGCTCTTCTAGCCTTATACCAGT-TTCTATGA---AACTTTCAACGACAAAAACGCAACTTCATGTGAGGTCCAAATCAAGGTAAG------------ATGGGTGAGATCTTTCAATTATGATGTT----GTTCTATGACCTTTTCCTTGTTTACAAGTTCTAAGACCCTTGTAAAGTTCACAaaacagt--------ttga-------aatttgacAAAAACACTTCCTGAAACCTCGTGCGTTGTTTGTTCGTGTTTCCACTTGG---------------------------TAGGTCCAACAACTAGATT---
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_0      1961289 306 +  4147112 taTCATT-TACTATGTCATTTGGCCCTGGTG---TTGTTGCTCCTCAAATCTTCTATCATT-TCTTATGAATCAAATTCCAATGACAAAATCTCAACTGAATGTCAGGTCTAAATCAAGGTGAGCTTTGATGGGACATAGGTTaatacaataatttttgatgtg----TTGGGCTGA--------TTGTTTACATTTTCAACAGCTTTGGAATAGTTCGTGAATCAGctgagaa-attgaattcaagaagttgagaaaaacaCTTCCTGAATCTTCGTGTGTCGTTTGTTCATGTTTTCACTTGG---------------------------TAGGTCCTACAATTCAATT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  798220 778 -   823664 I

a score=-5798.000000
s ce10.chrX             3555117 22 + 17718866 -----------------GT--------AGAGACTTTAACGGGATTTT
s cb4.chrX              8682205 23 + 21540570 ----------CGGTGGGTC--------cgaaaactc-----aattt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   661597 34 -  4500979 GTTCATAAATCAGCTAGtt--------ggaatattca----aattt-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1961595 27 +  4147112 -------------TGAGTTCTCTCCgacaaaaagtc------attt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  798220 778 -   823664 I
e caeSp111.Scaffold630  5707516 24 + 20921866 I

a score=-40340.000000
s ce10.chrX             3555139 146 + 17718866 ------TCATAT-TTCTGAGTTATGCAAA--------TAAACGCTTTTTTGACGGCGTGTGCAGC--ATCACGTGCAGTGTTCTAGCA-----------ACTTTTTTTTC-TATTGAAAATCAAGTTATG---------------------------GTAGACCTTAACCTTTCCGGGGCGTCAGATAATC---GTTTGGTTG-----------------------------A--------------A
s cb4.chrX              8682228 114 + 21540570 gcaaAGTCAAAA--TCTGAATTATGCAAA----------------------------TGTGCGAAGTGTTACTT-------------------------GTTTTCTTACC------GCCCTCACAT-------------------------------GTCGACTGTT---TTTTCCGTGTGTGCTACGT---------------------AGAT------------------AGGCTGGGGTTCGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   661631 235 -  4500979 aaGCAGTTGAAAGTTCTG---TAGGAAAAACACTTCCTGAAC-TGGCGTATGTTGTTTGTTCGGGTTTTCACTTGGTAGGTCCTACAATTAGGTTTGAAGTTTGTTTGCCCGACAAGAATTCATATTCTGAATTATGTAAATCAAAACGAAGTGCGGGGCAACTCTT---TTCT-AGCGCGTGACGCGTTC---AACTTGTCACTCTGGGAGATCTgacaacaaaaagtttaagATTGAGCTCCG--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5707540 137 + 20921866 ------TCATAT--TCTGAATTATGCAAA-------------------TAGGGGAAAAGTGCGGA--ACCACTT---------TGACATCACGTGTGA-gcgttcttttt---------ctcacgTTT-----------------------------CCCGATCTTT--------CAAACCTGAAAAGCTCGGTGTCTTGCCA-------AGTTTG----------------AGATTTAGTTCC---G
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      1961622 120 +  4147112 ----------tt--tctgaattatggAAA-------------------TCCGAACAATGTGCGGA--ACCACTC---------TACCAGCACGTGAG--gtgttcttctt---------ctcgcttt---------------------------------gat-------------agatctgaaaaaatc---ttctgGTCA-------AGAGCC----------------AGATTGATTTCC---G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  798220 778 -   823664 I

a score=49426.000000
s ce10.chrX             3555285  96 + 17718866 ATAATTGGTAACACGATG-CT----GAATGGTAGGCGCG------CGCGCGCGACAATGG------TCATCAGTTATTCTTTGAAAGAATATCAACTTTCTCAGGG---TACATGT
s cb4.chrX              8682342 103 + 21540570 ATAATTGGTAACCCAACG-CTGCGAGGGAGGGAGGCAAG------AAAAGTTGGTAGTGG------TCATAAGTTATTCTTTGAGAGAATATCAACTTTCTTTGAGACACACATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   661866  90 -  4500979 TTAATTGGTAACCTAATG-CT----GGTAGGGTGCCCAC------AACG------AGGGG------TCATCAGCTATTCTTCCATAGAATATCAACTTTCTCAGGG---TATATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5707677  96 + 20921866 ATAATTGGTAACACAATGCCT----AGCGGTTGGTTAAC-------GCGCGCGACGTCGG------TCATCAGTTATTCTTTCAAAGAATATCAACTTTCTCAGGG---TACATGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1961742  89 +  4147112 GTAATTGGTAACTTGATG-CT----GGTAGTAG-------------GCGCCCGATGATGG------TCATCAGTTATTCTTCCAAagaatatcaattttctcagGG---CACATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  798998 107 -   823664 ATAATTGGTAACATAATG-CG----GGTATATCGAGAAGAAAGTGAGGGTGCAGTGTCGGGGGACATCATTGGTTATTCTATCAAGTAATATCAACTTTC-CTGAG---TACATGT
i caeJap4.Scaffold18194 I 778 I 397

a score=-617.000000
s ce10.chrX             3555381 270 + 17718866 GCATAACATAACAACGCGTCGTTTGGAGTTGACTC---GAGTGCATGTGAAATGCACACTG----CTT-------TTCCAGTAAATGAAAATTCATTTTT-TACAATGCTTGAATATTTGCAAACGAGATATAAATATGTAAATAAATACT-CTTTGGAAATTGGAAAG-------------------TAAAAGTGCAAGATAA--TAA-GGATGTTTGACTAGGGATTTATGAACTTTGTCGTTTATGTGAATGAAATCCACTTGGATTATCGACTAATCCGGCAGAAGGAATTCAAAAAAAGGA-----TA
s cb4.chrX              8682445 212 + 21540570 GCATAACATAATATTG---CTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAatgtgaattcaaag---tttcaaagaaGCC----CTATATAA-TGGAA-----AAAGATTTT--AACAAGAT-----TATAA-----TGTGTCACTGTCGGGA-----------------------------AAAGTGCATATGAA--GAA-GGATATT--AGATTCTATCTTA---TCTGGT------TAAgagaaagattca-aaaaattcttccc----------------------AAAGAACA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   661956 230 -  4500979 GCATAACATAACGTG-----TTTCTGAGTTGACAT---GAGTGCATGTGAAATGCACATTG----CTC-------TTTCAAAGAAGCC--AGCAACTAAC-TAGAA-----AAAGATTTT--AGCAAGAT-----TATGT-----CTTATC-TGGAAGGGAATAA-----------------TG----TGAAAGTGCACA-AAA--CGA-CGATGTTTGAGCATTTGTCTCAGCTTCCTGTA---CGTAAGAACAAAATCCAGAAGGATTATTATCCAATGGATTGGA----AT----AAAAAACA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5707773 275 + 20921866 GCATAACATAACATG----CTTTTTGAGTTGAGTT---GAGTGCATGTGAAATGCACACGA----CTCTTGTTCCTCCTATTGAAGCCAAAGAAATCGAC-AAAAG-----GAAGATTTT--AACAAAAT-----TATGT-----GTCATT-CCATAGAATATTAGATAAGATGTAAAAGGTTGATTCTGAAAGTGCAATGGGATCCGACTGATGTTTGAACGCggtttctgtctttttttc---aaaaagaatgaaatcgA-TTAGATTATTATCTAATCATTCGAGA--CATATTCAAAGAGGAAGATA--
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_0      1961831 230 +  4147112 GCATAACATAATACG-----TTTTTGAGTTGACTC---AAGTGCATGTGAAATGCACACTG----CTCCTTGTTCTTTCAAGGAAGCCAAAGaagctaacaaaaaa-----aaagatgtt--agCGAGAT-----TATGT-----GCCATC-TGGACTAATATGAAAATGGATTGAAGACTGTG----TAAAAGTGCATAGAGATTTTG-TGATGTTTGAACAC--TTCCTGGTGTTT------------------------------TCGTTATCTAA--ATCCAAA----ATCCGCAAAAA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  799105 397 -   823664 I

a score=-6580.000000
s ce10.chrX             3555651 37 + 17718866 GAGCCTATCTACCAACTATTATTATATCTAGTT----CGTC--
s cb4.chrX              8682657 17 + 21540570 -------------------ATTCACCCCCA-------CTTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   662186 24 -  4500979 -------------------TCATATTCCAAACCAGAGCACcat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1962061 22 +  4147112 -----------------ACCATTATCCCCAATGAA--CAtg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  799105 397 -   823664 I
e caeSp111.Scaffold630  5708048 26 + 20921866 I

a score=-21140.000000
s ce10.chrX             3555688 53 + 17718866 TTCACA---TAGATCGATTCTGACCACAGT----CGTAAACCGGGTGTACAC-----GACCAACT--------------
s cb4.chrX              8682674 51 + 21540570 TCGGAA---TAGCCTAATTATGAC--GGGT----CGTAAAACGA-------------GAC--GACGTGAATATCA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   662210 64 -  4500979 tctgaattttctcttcgttttgGC--CAATCTCCCATAATAAAA-------------AACCTGTCGTAAACGGAAGACT
i caeRem4.Crem_Contig0  C 0 I 54
s caeSp111.Scaffold630  5708074 19 + 20921866 ----------------------------------TTCAAATAGA-------------GGTCTA------ATA-------
i caeSp111.Scaffold630  I 26 C 0
s caePb3.Scfld02_0      1962083 35 +  4147112 ----------------------------------ttcaaaaagagagaaaaccaTGTGGTCAAACG---ACA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  799105 397 -   823664 I

a score=-13418.000000
s ce10.chrX             3555741 50 + 17718866 --------------CTCCCGCGCGCTGTCACCACTACTATAGTGCAGTTCACCCATTACTCTTC-----------------
s cb4.chrX              8682725 59 + 21540570 TCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTA-----CGCTCGT---TGTTCGGA--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5708093 24 + 20921866 --------------TGTCGATTGGGTGTG------------------------------TGCGCAGA-------------C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1962118 51 +  4147112 --------------CTCCCAAAGGGCAACTCGAT---------------CGATCGTT-TTGTGAAGACCTGTCGGCCCCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  799105 397 -   823664 I
e caeRem4.Crem_Contig0   662274 54 -  4500979 I

a score=-27043.000000
s ce10.chrX             3555791 222 + 17718866 ----------CCATCT---CCCCCCCCC-----TTTTCTCCCTATTGCGCACTATTCGATCACCTAATTAGCGC----ACAT---------CGACCGCCGGTCTCTCTGCATTCACCTTTTGCTGTCACAT----------TATGGCTGGCTCCAACTCGTCCGCCATGTCTTTGGACACTACTGATTTTGACTTTACTTCCACAA---TTCCCAGTACGCCG------------TCATCGTTTGATGATTTCTTTTTG-------ATCCCAACGCCTGC---------AAAAA
s cb4.chrX              8682784 214 + 21540570 ----------CTgttc---ttttccctt-----tttacTCCC-------CCTTATTCAACCA---AATTAGTGGGT--CCATCCTCTTCGACGACCA-------CCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAG------------------------------------ATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCA-------CTCCGAACCGTCCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   662328 178 -  4500979 ----------CTGTCC---CTCTCACCT-----TGTTCTCC---------------CATCCA---AATTAGTGGAC--CCGT---------CGACCAATT-CAGTCAGTCAGTCTTTCTCCTATTCCACAT----------GATGAATAGGAGATCTTCTA------------------------------------TTCTTCCTG---CTCCACGTTCTCCG------------GTGTCTTTCGACGATCTGTTTCTT-------ACCCCATCATCATCACCATACGGGGAAA
i caeRem4.Crem_Contig0  I 54 C 0
s caeSp111.Scaffold630  5708117 182 + 20921866 ACATACACAGCAGTCTGCACTCTTCCTC--ACAGTCTGCCC---------------TGGC-----GGTTAGCAC----ACGT---------CGTGCGGTCTTCTTTATTCGGTCGTTTAAcgattttctaa----------aatgaaaTCCACCATTTCGT------------------------------------CTCCGGCTA---TTTCTATCGGCCCA------------TGCTCGTCGgatgatttcttttca-------accCCTCAATCATC---------GAGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1962169 174 +  4147112 ACATAACCACCATTCC---CTCTCACTCGAACAGTCTCTCC-------------------------ATTAGTACGTCGACGT---------CGTCTTGTTACTTTTATTCCTTC------CAATCTGACAA----------AATGAAAGCCAACACTTCTT------------------------------------CTCCGGCTC---TTTCAATTGGCCCA------------AATTCTCATGATCCATTCTTCTTG-------ACCCCACAGTCGTC---------GAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  799105 397 -   823664 I

a score=514165.000000
s ce10.chrX             3556013  985 + 17718866  
s cb4.chrX              8682998  927 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   662506  886 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5708299  901 + 20921866  
i caeSp111.Scaffold630  C 0 I 21
s caePb3.Scfld02_0      1962343  897 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  799502 1047 -   823664  
i caeJap4.Scaffold18194 I 397 C 0

a score=-10981.000000
s ce10.chrX             3556998 34 + 17718866 GAAAAATA---AACTGTTTGGaaattaaaaataaatt
s cb4.chrX              8683925 17 + 21540570 ---------------GATC---AGTCTTGatataa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   663392 19 -  4500979 ---------------GATg---aaactgaatgaaatg
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      1963240 21 +  4147112 ----------------ATCCGAAATTTTACTCAAGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  800549 27 -   823664 --AAATTATCGAACAGTTT---ACTTGTGATT-----
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5709200 21 + 20921866 I

a score=43511.000000
s ce10.chrX             3557032 215 + 17718866 attattgattt-tttttttCAGATTCCTGCGTGACCGTCTATTCCTAGACCTCCTCGAAAGCTACGAGATTACCGATAAGGAGGACAAACCGTCAAGCTC------GAAAGACAAAAACTGAG---------CAATCATATTCTCAT---TTT---ATGATCTTTTTGTT----TTCC-CACCCCCGCACAATATAAATTGA--AGGT--AGTGCAAA--TGTGTCCTCTTTTTCTCTCTCT---CACGTA
s cb4.chrX              8683942 200 + 21540570 ------aattccaaattttcagcttccttCGCGACCGGCTCTTCTTGGATCTGCTCGAAAGCTACGACACTGGA------GACAACGGACCATCCACTTC------CAGCGCCCGTAACTAGG--------CTGCTC-----CATCT---ATTAACCAAAACTGTTTTCTAAAATCAT-GACTATTGCACAATAT---------TGCCTGAGTGCAAATCCGTATCCCGTT-------CTCTCCACACGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   663415 207 -  4500979 cttactaattaatttttttcagattcctccgTGATCGTCTCTTCCTTGACCTTCTGGAGAGCTATGATTCTGGAGATAAGGACGACAAGCCGTCAAGCTC------CAAGGACAGAAACTGAG--------CTGATC-----TACAC---TTTAACATGATCTTATGTT-----TCAT-T-CTCTTGCACAATAT--ATGATAATGCT--AGTGCAAA-ATGTGTCCCGTT-------CTCT---CACGTA
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5709221 208 + 20921866 ttcattaaTCGGTTTTTTACAGTTTCCTTCGGGATCGCCTGTTCTTGGATCTGCTCGAAAGCTATGATTCTGGAGACAAGGAGGACAAGCCATCGAGCTC------AAAAGAGCGTAACTAAG--------TGGCTCCTCATCACAC---TTCAATATGatctaat--------tcat-tttcttcgcaCAATAT---TTGT--TGGT--AGTGCAAA--TATCTTTTGTT-----CATCCT---TACGTA
i caeSp111.Scaffold630  I 21 C 0
s caePb3.Scfld02_0      1963261 205 +  4147112 ---ATGTATGTCtttgtttcagtttccttCGTGATCGTCTCTTCCTCGATCTTCTCGAGAGCTATGAC------GATAAGGACGACAAGGCTTCCACCTC------AAAAG------ACTAAGCAGAGCATTCGCTCCCATCCGCACCCATTTTCCATGATCTAAT--------TCTTGCTTTTGTGCACAATAT--ACTAT--TGCT--AGTGCAAA--TTTTACCAGTT------ATTAC---CACCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  800576 205 -   823664 TTTAAACATAT-TCTTTTTCAGTTTCCTTCGTGATAGAATATTTCTGGACTTTTTGGAAAGTTACGAAACTGGAGACAAAAAGGACGAACCCACTACTTCTGCGGTTAAGGATAAAAA--GAA--------TTGAGCCTATGTACAA---TTC--CATGGTCT-----------TCGC---CGtccacaaaaaac--aatta--tggT--AGTTCAAATGTGTGTTTAATT-------TCTC---CACGTA
i caeJap4.Scaffold18194 C 0 N 0

a score=989.000000
s ce10.chrX            3557247 35 + 17718866 GTTGTCATTTTC---ATTGGAAC-------TTTATCTGTACGTTT-----
s cb4.chrX             8684142 38 + 21540570 GTTGTCACTCTCGCCCCTTGAAT-------TCTATTCGTATGTTT-----
i cb4.chrX             C 0 I 810
s caeRem4.Crem_Contig0  663622 34 -  4500979 GTTGTCATTCCCAC----TGAAT-------TCTATCCGTATGTTT-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5709429 50 + 20921866 GTTGTCATCTCATACCTgtcaaatgtttcttttacCCTAACCCATCCGAT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     1963466 31 +  4147112 GTTGTCATTT-----CTTTAAAA-------CTTATTCCAACCC-------
i caePb3.Scfld02_0     C 0 C 0

a score=-1454.000000
s ce10.chrX            3557282 50 + 17718866 CTATTCTTTGAAACCTGTCTAAAATTTCAACATGCCGCTCATTTCGTTGA
s caeRem4.Crem_Contig0  663656 45 -  4500979 CAAACTATTGAATCCTGTCAAACAAGTTGCCA-----ACAATTTCCATGA
i caeRem4.Crem_Contig0 C 0 I 900
s caeSp111.Scaffold630 5709479 40 + 20921866 TGATTCAACAATTCTTGTCAAAtgcttcat----------tttctctcaa
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     1963497 30 +  4147112 ----------GATCCTGTCAAAAACGTAGT----------GTCTCTCCCA
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8684180 810 + 21540570 I

a score=-1647.000000
s ce10.chrX            3557332 192 + 17718866 GCTTTTTTCTCATCTTTTCTGTATTCTAATTGAATCAGACTCTTAATTG------CCAGTTTTTT-------CTCAC-----------------TGAATT--------TTTTTCCTATTATGTGT-TGTAAAAAAAGAA----GCAAGCTCTCATAACCGAAAACTTTTCTTCTCCCAACACAACACCTATCCC--TAATTCTCGCTTTTCCGTAT-TTTGATCTCTGTTATGAAGGT
s caeSp111.Scaffold630 5709519 209 + 20921866 gaaatttttcacGTCTGCCC---------TTAAGGCAAACTCTTACTTTCTTGTACCATGTTTCTGAGTTTTCCCATTCACACTAACTAACCCATCAACTCGTCTCTGTTTCTTGTACCATAAAA-TCCaaagaacaaa----acaaacccccat--ttgaaaaatctcttgCTTT----------GTCACCCC--CACCACACACTTCTCT-TTTAATTGATCTCCGTTTTGACGGT
i caeSp111.Scaffold630 C 0 I 577
s caePb3.Scfld02_0     1963527 194 +  4147112 TATATTAATCCATCCCACC------------------AATTCTTCGATT------TAATCCCTTTGAG----CTCATGCCAACTCATTTCACAATcaatc--tctcctttttctgtaccatgaaacttcaagaaacaaaaaacaaaaaatatttt--ttgaaaaatctcgcCCCAT----------TTTCTCCCAAAACTTCTCGCTTCCCT-TAT-TCTGATCTCCGCATTGACGGC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8684180 810 + 21540570 I
e caeRem4.Crem_Contig0  663701 900 -  4500979 I

a score=300.000000
s ce10.chrX            3557524 18 + 17718866 ATTACAGAGTTGTCTTGT
s caePb3.Scfld02_0     1963721 18 +  4147112 ATCGCCAATTTATTGTAT
i caePb3.Scfld02_0     C 0 I 729
e cb4.chrX             8684180 810 + 21540570 I
e caeSp111.Scaffold630 5709728 577 + 20921866 I
e caeRem4.Crem_Contig0  663701 900 -  4500979 I

a score=0.000000
s ce10.chrX            3557542 1171 + 17718866  
e caePb3.Scfld02_0     1963739  729 +  4147112 I
e cb4.chrX             8684180  810 + 21540570 I
e caeSp111.Scaffold630 5709728  577 + 20921866 I
e caeRem4.Crem_Contig0  663701  900 -  4500979 I

a score=166.000000
s ce10.chrX             3558713 44 + 17718866 TTGATTCGTGAAA---------AATTGGAACTGAAATAAAGTTGCGGTTAGTG
s cb4.chrX             13053047 51 - 21540570 TTGGtacatgaaatttttttttgacttgaagtgaaaaaagaaaatg--tattA
i cb4.chrX             n 810 C 0
e caePb3.Scfld02_0      1963739 729 +  4147112 I
e caeSp111.Scaffold630  5709728 577 + 20921866 I
e caeRem4.Crem_Contig0   663701 900 -  4500979 I

a score=1271.000000
s ce10.chrX             3558757 9 + 17718866 TACATTTTT
s cb4.chrX             13053098 9 - 21540570 TACATAGTT
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      1964468 9 +  4147112 TACATTATC
i caePb3.Scfld02_0     I 729 I 3
e caeSp111.Scaffold630  5709728 577 + 20921866 I
e caeRem4.Crem_Contig0   663701 900 -  4500979 I

a score=-5379.000000
s ce10.chrX             3558766 29 + 17718866 -------------------TTATGAACATTCAGAAATGTCAAAAATG-G
s cb4.chrX             13053107 29 - 21540570 GCATCAAATGTAGCAACTGataagaattt--------------------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630  5710305 27 + 20921866 -------------------TTAAGAATCTTCCGAA-AGTTCGTGACG--
i caeSp111.Scaffold630 I 577 C 0
s caePb3.Scfld02_0      1964480 29 +  4147112 -------------------TTATTATTTCTCAGAATCGTTGATGAGGC-
i caePb3.Scfld02_0     I 3 C 0
e caeRem4.Crem_Contig0   663701 900 -  4500979 I

a score=1680.000000
s ce10.chrX             3558795 13 + 17718866 TA------GTTTTTCAGAA
s cb4.chrX             13053136 13 - 21540570 tt------tcttttcaaaa
i cb4.chrX             C 0 n 0
s caeRem4.Crem_Contig0  3961683 13 +  4500979 TA------GTTCTCCAGAA
i caeRem4.Crem_Contig0 n 900 I 11
s caeSp111.Scaffold630  5710332 11 + 20921866 --------GTTTTGCAAAa
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0      1964509 19 +  4147112 TCTATAATGTCTCATAGCA
i caePb3.Scfld02_0     C 0 C 0

a score=-1476.000000
s ce10.chrX            3558808 13 + 17718866 --TACAAGAATGTGT
s cb4.chrX             8684990 13 + 21540570 --TACAAAAATTGCG
i cb4.chrX             I 810 C 0
s caeRem4.Crem_Contig0 3961707 13 +  4500979 --GATGATAAtgtca
i caeRem4.Crem_Contig0 I 11 C 0
s caeSp111.Scaffold630 5710343 14 + 20921866 ta-atgtatttttta
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     1964528 15 +  4147112 CATATGAAACTTTTA
i caePb3.Scfld02_0     C 0 C 0

a score=-9499.000000
s ce10.chrX             3558821 20 + 17718866 A-----ATGAATAGTA--------TTCTAGTGT
s cb4.chrX              8685003 22 + 21540570 A---TGAAAACAATAA--------TTCTAATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  3961720 25 +  4500979 aaatcagaaaaaataa--------tactaATGC
i caeRem4.Crem_Contig0  C 0 n 0
s caeSp111.Scaffold630  5710357 25 + 20921866 a--------aatgttgtCTGACTCTTCCAGTTT
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      1964543 15 +  4147112 C--------AAAGTAA----------Caagttt
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194  221469 20 +   823664 -----AATAACAAGTA--------ATTTATagc
i caeJap4.Scaffold18194 N 0 C 0

a score=269351.000000
s ce10.chrX             3558841 306 + 17718866 -GAAA-ATTTATT------------ATGGACTAAAAC-ATGA---TAAATGTGA--ATTTAATAGGCAACGCAGGCGGTTGGGATCTTGACAGACTCAACAAAGGAGACTGGGAAATCGACCAAGTCGGCGACGGTTTGCTCACGGGCCTCCTTCAAGAAACGGCGGGCGTTCTTGCTGTGGCGTGGCATGCAAGTGAAACGGATCTTCTTGTTGGAAGTCTTCTCGGATTCGAGTCCACGGCGGCACTCAGAGACTGGCTCGATGGAGAAGCAGACGCGGTTGGAGAACTCCTTGATGAGGGTCTTCTTGACGAGTTCTGAAAAA
s cb4.chrX              8685025 311 + 21540570 -GAAC-ATTCATTTCTATATTGGAAAACGACTAAGAC-ATGA---CATGTGTGA--ATTTAGAAAGCGACGCAGGCAGTTGGGATCTTGACTGCCTCGACGTAGGAGACTTCAAAGTCGGACAAGTCGAGAACGGTTTGCTCACGAGCCTCCTTCAAGAAGCGACGAGCGTTGTTGCTGTGACGTGGCATGCAGGTGAAGCGGATCTTCTTGGTCAAGGTCTCGTCGGTCTTGTATCCACGGCGACACTCGGCGACTGGCTCAAGGGAGAAGCAGACGCGGTGGGAGAACTCCTTGATTTGGGTCTGCTCGACGGACTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   664601 308 -  4500979 -GAAA-ATTTATT------------ATCGATTCAGTC-AAGT---AGTATATAATTATTTAATAGGCGACGCAGGCAGTTGGGATCTTGACAGCCTCAACGTAGGAAACTGGGAAGTCAGTCAAGTCAAGGATGGTCTGGTCACGGGCCTCCTTCATGAAACGACGGGCGTTCTTGCTGTGACGTGGCATGCAGGTGAAGCGGAGTTTCTTGGAGGTAGTCTTCTCGGATTCAAATCCACGACGGCACTCGGTGACTGGCTCAAGGGAGAAGCAGACGCGGTTGGAGAACTCCTTGATGAGGGTCTTCTCGACAGACTCTGAAATA
i caeRem4.Crem_Contig0  I 900 C 0
s caeSp111.Scaffold630  5710392 308 + 20921866 -AAAACATTTATT------------AACGACTAAGAAGGTGA---TAAATGTGA--AATTAGAAAGCGACGCAGGTGGTTGGAACCTTGACGGCCTCGACGTAGGAGACGGAGAAGTCGGCCAAGTCGAGAACGTTTTGCTCACGAGCCTCCTTCAAGAAACGGCGGGCGTTGGTGCTGTGACGTGGCATGCAAGTGAAGCGGATCTTCTTGGTGGAAGTCTTCTCTGATTCGTATCCACGACGGCATTCATTGACTGGCTCGAGGGAGAAGCAGACACGGTGGGAGAACTCCTTGATGAGGGTCTTCTCAACAGATTCTGAAACA
i caeSp111.Scaffold630  I 10 I 30
s caePb3.Scfld02_0      1964564 306 +  4147112 -gaaa-atttaTT------------AGCAGCTAAGAA-Atgg---taaaaatga--aattagaaagCAACACAGACAGATGGGATCTTGACGGCCTCAACAAAGGAGACTGGGAAGTCAGCCAAGTCAAGAACGTTCTGCTCACGAGACTCTTTCAAGAAACGACGGGCGTTATTGCTGTGACGTGGCATGCAAGTGAAACGGATCTTCTTGGAGGAAGTCTTCTCGGATTTGTATCCACGGCGGCACTCGGTGACTGGCTCGAGGGAGAAGCAGATGCGGTGGGAGAACTCCTTGATGAGGGTTTTCTCAACAgtctctgaaatt
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194  221489 304 +   823664 taaac-attt-tt----------------attataaT-GTGAATGCAAATGCAGTTTTCTAATAGGCGACGCAGGCAGTTGGCATCTGGATGGCCTCAACGTACGAGACTGGGAAGTCGACCAGGTCGAGAA---TCTCATCGCGAGCTTCCTTAAGGAAACGGCGAGCGTTCTTGCTGTGACGTGGCATGCAGGTGAAGCGGAGCTTCTTGGTGGAGTTCTTCTCTGGCTCGAATCCACGGGCGCACTCGGTGACTGGTTCAAGGGAGAAGCAGACTCTGTGGGAGAACTCCTTGACAAGGGTCTTCTTCAcaagttctgaaaat
i caeJap4.Scaffold18194 C 0 C 0

a score=-8404.000000
s ce10.chrX             3559147 37 + 17718866 TATGTATTTTGTTAAAACTACACATCATTCAGCTTTA
s cb4.chrX              8685336  9 + 21540570 ----------------------------TGAAAGTaa
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   664909 23 -  4500979 ----TCTTCTTGTT----------TAATTGAAAGTGA
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0      1964870 34 +  4147112 gaaatgttgTGATTA---TGCAACAAAGTGATAGTTG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194  221793 30 +   823664 ---tttttattgtaa----ataattttttaaatataa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  5710700 30 + 20921866 I

a score=342813.000000
s ce10.chrX             3559184 427 + 17718866 AACTAACC-------------CTTCTCAGTTTCCTTTTCA---TCGTAGTTGCTCTCGTAGTCGGAGCTGCTCTCGTAGTCGGACTTCTTCTCTTCTCTGTTCCATTTGTTTTTGTAGTTCTTCTTCTCGGAGATGCGGTCTTTCTCAACTTCGCATTCCTGAAAACGAAATAAATATATATTCAGTTTTTTGAAACAATATAGTT----------ACTTCGTTCTTGAGAAGGTAAGAGCGGTGGAATTCCTCAACATCCTCAGTTTCGTAGTTGTCAGCGGTCATGAACTCATTGTCTCTCTCACCGTCATTGTTTCCGCAAAGTCCGCAAAGTTGGTTTTGTGAAGCAACGGATGGCATGTTGGTCTTGACAGTGTATCCATCGAAACGAACCTCTCCATGTGGAAGACGAATAACAATAAGGTTATCTCCAAGAATTTCGATACTGAAA
s cb4.chrX              8685382 434 + 21540570 GGTTTACTCACTCTTCTCGGACTTCTCGGATTCCTCCTCGTATTCCTCGTAGCTCTCGGAAGAAGAT---------TggtctctcttcttctcctctctgtcccatttgtttctgtagttcttcttctcGGAAAGACGGTCGTTTTCAACTTCGCACTCCtgca----aattatttttgaatta--tttaaaGCAAAAATACAATT---GATAC-TACCTCGTTCTTGAGAAGGTAAGAGCGGTGGAACTCTTCAACATCCTCAGTCTCGTAGTTGTCAGCGGTCATGAACTCGTTGTCTTTCTCTCCGTCGCTGTTTCCGCAGAGTCCGCAAAGTTGGCTCTTGGAGGCAACAGATGGAAGGTTGGTCTTGATGGTATATCCGTCGAAGCGGACCTCTCCTTGTGGAAGGCGGATTACGACAAGGTTGTCTCCGAGGATTTCAATCCTGAAA
i cb4.chrX              I 37 I 1
s caeRem4.Crem_Contig0   664944 410 -  4500979 AGCTTACT-------------GTTCTCGGATTCCTCCTCA---TCTTCGTTGCTCTCGTATTGAGAc------------tcttgtctcttctcttctctgttccacttgtttctgtagttcttcttctcGGAAAGacggtcattttcaacttcgCACTcctgaaa--taaatagtttcttatca----------aaaatttcaatc---agtaCAAACCTCGTCCTTGAGAAGGTAGGAGCGGTGGAATTCCTCAACATCTTCAGTCTCGTAGTTGTCAGCGGTCATAAATTCGTTGTCGTTCTCTCCGTCATTGTTTCCGCAGAGTCCGCAGAGTTGGCTCTTGGAAGCAACAGATGGAACGTTGGTCTTGATGGTATATCCGTCGAAACGGACTTCTCCCTGTGGAAGACGGATGACGATGAGGTTGTCTCCGAGAACttccattctgaaa
i caeRem4.Crem_Contig0  I 12 I 1
s caeSp111.Scaffold630  5710730 411 + 20921866 AACTAACT-------------Gttctcggtctcttcgtcg---tcttcgttgctctcatattgagat------------tcctctctcttctcctctcttgtccacttgtttctgtagttcttcttctcggaGATACGGTCGTTCTCAACCTCGCATTCCTAtta--gaaataattatttac------------ATCTAtacatttgaaaacatttacCTCGTTCTTGAGAAGATACGAGCGGTGGAACTCCTCAACATCTTCAGTCTCGTAGTTGTCAGCAGTCATGAATTCGTTGTCCTTCTCTCCGTCATTGTTTCCGCAGAGTCCGCAGAGTTGGTTCTTGGAGGCAACAGATGGAAGGTTGGTCTTGATGGTGTATCCGTCGAAGCGGACTTCTCCTTGTGGAAGACGGATGACAATGAGGTTGTCTCCGAGgatttcgattctgaaa
i caeSp111.Scaffold630  I 30 I 577
s caePb3.Scfld02_0      1964906 411 +  4147112 AACTTACT-------------GTTCTCGGTCTCGTCATCG---TCTTCGGTGTTCTCGTATTGAGAc------------tcctctctcttctcctctctgttccacttgtttctgtagttcttcttctcGGAGAGACGATCGTTCTCAACCTCGCACTCCTGAAA--AACATAGTTGGCAAA------------AATTCTATAATGTTAAATGTAAACCTCATTCTTGAGAAGGTAAGAGCGGTGGAACTCCTCAACATCTTCAGTCTCGTAGTTATCGGCAGTCATGAACTCATTGTCCTTCTCTCCGTCATTGTTTCCACAGAGTCCGCAAAGTTGGTTCTTGGTGGCAACAGATGGGAGGTTGGTCTTGATGGTGTATCCGTCGAAGCGAACTTCTCCTTGTGGAAGGCGGATGACAACGAGGTTGTCTCCGAGGATTTCAATTCTGAAC
i caePb3.Scfld02_0      I 2 I 36
s caeJap4.Scaffold18194  221823 363 +   823664 aactTACG-------------GTTCTCGTTAGTCTCCTCA---CTGTCGTCTTGATCGTACTCCTTC------------TCCTCCTTCATCTCCTCTCTATTCCATTTGTTTCTGTAGTTCTTCTTCTCCGAGAGACGATCGTTCTCAACTTCACACTCC-----------------------------------------------------------TCGTCTTTAAGAAGGTAAGAGCGGTGGAATTCCTCCAAGTCCTCGGTTTCGTAGTTCTCAGCGGTCATGAACTCGTTGTCTCTTTCTCCGTCATTGTTTCCGCAAAGACCGCAAAGTTGGCT---GGAAGCGACCAATGGAAGGTTGGTCTTAACGTTGTATCCGTCAAAGGAGACCTCTCCTTGTGGAAGACGGATGACGATGAGGTTGTCTCCAATCATCTCGAGGCTAAAT
i caeJap4.Scaffold18194 C 0 C 0

a score=-123.000000
s ce10.chrX             3559611 1 + 17718866 A
s caeJap4.Scaffold18194  222186 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1965317 36 +  4147112 I
e cb4.chrX              8685816 1 + 21540570 I
e caeSp111.Scaffold630  5711141 577 + 20921866 I
e caeRem4.Crem_Contig0   665354 1 -  4500979 I

a score=-12041.000000
s ce10.chrX              3559612 37 + 17718866 -------ACGAGATTAGAAAAATTCATGTGAT-----TTAGAGTTAA-------AG
s cb4.chrX               8685817 30 + 21540570 -------GTGAAATTA-------TTTGTTATT-----CTGGAATTGG-------AT
i cb4.chrX              I 1 I 2
s caeRem4.Crem_Contig0    665355 33 -  4500979 -----------aataa-------ttatatttt-----taggaaaaagttTACTTAT
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold630  15330073 31 - 20921866 -----------tattg-------tttttcgtttgtAATCGACAATAG-------AC
i caeSp111.Scaffold630  n 577 I 2
s caeJap4.Scaffold18194   222187 33 +   823664 GTGAAATGTAAAAATA-------TACCATGAT---AGTTAAAA-------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       1965317 36 +  4147112 I

a score=1697574.000000
s ce10.chrX              3559649 1828 + 17718866  
s cb4.chrX               8685849 1821 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0    665390 1822 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  15330106 1829 - 20921866  
i caeSp111.Scaffold630  I 2 n 2
s caePb3.Scfld02_0       1965353 1834 +  4147112  
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18194   222220 1822 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1036316.000000
s ce10.chrX              3561477 1756 + 17718866  
s cb4.chrX               8687670 1737 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0    667212 1731 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       1967187 1737 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   224042 1737 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold630  15331935    2 - 20921866 I

a score=728088.000000
s ce10.chrX             3563233 896 + 17718866  
s cb4.chrX              8689407 898 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   668943 905 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5711718 898 + 20921866  
i caeSp111.Scaffold630  I 577 C 0
s caePb3.Scfld02_0      1968924 906 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  225779 897 +   823664  
i caeJap4.Scaffold18194 C 0 T 5202

a score=1268.000000
s ce10.chrX             3564129 24 + 17718866 GTTGCAGATGTCAGTTTTCCCTGA--
s cb4.chrX              8690305 23 + 21540570 G-TAGAACTGTCAACTCGTTTCGA--
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   669848 23 -  4500979 G-TAGaactgtcaattttttccaa--
i caeRem4.Crem_Contig0  C 0 I 35760
s caeSp111.Scaffold630  5712616 24 + 20921866 G-TGAAGATGAC-AGTTTTGCTGAGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1969830 25 +  4147112 G-TATaaatgtcaaaattttcaaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  226676 5202 +   823664 T

a score=4571.000000
s ce10.chrX             3564153 40 + 17718866 AGATCGACGCCTAAATGATGGT-TTCTGAATTTAATTGATA
s cb4.chrX              8690341 41 + 21540570 ATATCGACGGGTTAATGATCGGTGTCCAGAATCTGCTGATA
i cb4.chrX              I 13 I 10422
s caeSp111.Scaffold630  5712640 40 + 20921866 AAATAGACAGTATCACGATAGA-ATCTAATTCTTATCGATA
i caeSp111.Scaffold630  C 0 T 2312
s caePb3.Scfld02_0      1969855 40 +  4147112 agataGACGTTTCAGTGATTGG-GCTTCAATTTGATTGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  226676 5202 +   823664 T
e caeRem4.Crem_Contig0   669871 35760 -  4500979 I

a score=60.000000
s ce10.chrX             3564193 2 + 17718866 GA
s caePb3.Scfld02_0      1969895 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 1993
e caeJap4.Scaffold18194  226676 5202 +   823664 T
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5712680 2312 + 20921866 T
e caeRem4.Crem_Contig0   669871 35760 -  4500979 I

a score=0.000000
s ce10.chrX             3564195 3186 + 17718866  
e caePb3.Scfld02_0      1969897 1993 +  4147112 I
e caeJap4.Scaffold18194  226676 5202 +   823664 T
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5712680 2312 + 20921866 T
e caeRem4.Crem_Contig0   669871 35760 -  4500979 I

a score=371.000000
s ce10.chrX             3567381 8 + 17718866 GATTTTTT
s caeSp111.Scaffold630  5710368 8 + 20921866 GACTCTTC
i caeSp111.Scaffold630  T 2312 C 0
e caePb3.Scfld02_0      1969897 1993 +  4147112 I
e caeJap4.Scaffold18194  226676 5202 +   823664 T
e cb4.chrX              8690382 10422 + 21540570 I
e caeRem4.Crem_Contig0   669871 35760 -  4500979 I

a score=631.000000
s ce10.chrX             3567389 14 + 17718866 CATGTATTCTACTG
s caeSp111.Scaffold630  5710376 13 + 20921866 CA-GTTTTCTACTA
i caeSp111.Scaffold630  C 0 I 3
s caeJap4.Scaffold18194  221474 14 +   823664 CAAGTAATTTATag
i caeJap4.Scaffold18194 T 5202 C 0
e caePb3.Scfld02_0      1969897 1993 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeRem4.Crem_Contig0   669871 35760 -  4500979 I

a score=388.000000
s ce10.chrX             3567403 21 + 17718866 -TGAAAATTTATTATGGACTAC
s caeRem4.Crem_Contig0   705631 20 -  4500979 -gaaaaattt-ctaaaatctaA
i caeRem4.Crem_Contig0  I 35760 C 0
s caeSp111.Scaffold630  5710392 21 + 20921866 -AAAACATTTATTAACGACTAA
i caeSp111.Scaffold630  I 3 I 1
s caeJap4.Scaffold18194  221488 17 +   823664 ctaaacattt-ttattat----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1969897 1993 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I

a score=-2780.000000
s ce10.chrX             3567424 19 + 17718866 AAAATGATAAATATATGGA--------
s caeRem4.Crem_Contig0   705651 14 -  4500979 AAAGTGATA-----TTGAA--------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5710414 17 + 20921866 AAGGTGATAA--ATGTGAA--------
i caeSp111.Scaffold630  I 1 I 6447
s caePb3.Scfld02_0      1971890 17 +  4147112 TAGATAAGAA--TCACGAA--------
i caePb3.Scfld02_0      I 1993 C 0
s caeJap4.Scaffold18194  221505 22 +   823664 aaTGTGA-----ATGCAAATGCAGTTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I

a score=129271.000000
s ce10.chrX             3567443 501 + 17718866  
s caeRem4.Crem_Contig0   705668 484 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      1971907 482 +  4147112  
i caePb3.Scfld02_0      C 0 T 7303
s caeJap4.Scaffold18194  221527 431 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=95107.000000
s ce10.chrX             3567944 232 + 17718866 TTCTTGAGAAGGTAAGAGCGGTGGAATTCCTCAACATCCTCAGTTTCGTAGTTGTCAGCGGTCATGAACTCATTGTCTCTCTCACCGTCATTGTTTCCGCAAAGTCCGCAAAGTTGGTTTTGTGAAGCAACGGATGGCATGTTGGTCTTGACAGTGTATCCATCGAAACGAACCTCTCCATGTGGAAGACGAATAACAATAAGGTTATCTCCAAGAATTTCGATACTGAAAA
s caeRem4.Crem_Contig0   706152 232 -  4500979 TCCTTGAGAAGGAAGGAGCGGTGGAATTCCTCAACATCCTCAGTCTCGTAGTTGTCAGCGGTCATGAATTCGTTGTCGTTCTCTCCGTCATTGTTTCCGCAGAGTCCGCAGAGTTGGCTCTTGGAAGCAACAGATGGAACGTTGGTCTTGATGGTGTATCCGTCGAAACGGACTTCTCCTTGTGGGAGACGGATGACAATGAGGTTATCTCCGAGAACTTCCATTCTGAAAT
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0      1965086 232 +  4147112 TTCTTGAGAAGGTAAGAGCGGTGGAACTCCTCAACATCTTCAGTCTCGTAGTTATCGGCAGTCATGAACTCATTGTCCTTCTCTCCGTCATTGTTTCCACAGAGTCCGCAAAGTTGGTTCTTGGTGGCAACAGATGGGAGGTTGGTCTTGATGGTGTATCCGTCGAAGCGAACTTCTCCTTGTGGAAGGCGGATGACAACGAGGTTGTCTCCGAGGATTTCAATTCTGAACT
i caePb3.Scfld02_0      T 7303 I 35
s caeJap4.Scaffold18194  221958 229 +   823664 TCTTTAAGAAGGTAAGAGCGGTGGAATTCCTCCAAGTCCTCGGTTTCGTAGTTCTCAGCGGTCATGAACTCGTTGTCTCTTTCTCCGTCATTGTTTCCGCAAAGACCGCAAAGTTGGCT---GGAAGCGACCAATGGAAGGTTGGTCTTAACGTTGTATCCGTCAAAGGAGACCTCTCCTTGTGGAAGACGGATGACGATGAGGTTGTCTCCAATCATCTCGAGGCTAAATT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=-2564.000000
s ce10.chrX             3568176 37 + 17718866 ACGAGAT-TAGAAAAAT-TCATG-TGATTTAGAGTTAAAG
s caeRem4.Crem_Contig0   706391 28 -  4500979 ACGTATT-TAGAAAGA---------AGTTTACTTTTAA--
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold18194  222187 33 +   823664 GTGAAATGTAAAAATATACCATGATAGTTAAAA-------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0      1965318 35 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=111129.000000
s ce10.chrX             3568213 316 + 17718866 CTTACTTGTATTGTTCAAGTTCAGTTGGGTTAACCTTCTTTTCGTCAACCTTGACAAGGAACTTATCGTCAGACTTCTTCACAACAATTTCTTCCTCACGGCGGACAACCTTAACGAGAAGCTCCTCAGAGTTCTTGTTGATCTTCTTGGCAAGAACAGCGAATCTTGGCTGTTCGGAGCAATCCTTGGCAACAAGAGAGTAGCAGGTGGTGAGTGGAGCACGGTAGATCACGTTGTCAAAGGTAGAAACCTCAGATTGGCCAACCTTGCAGGTGGCTCCGGTCTTTTCCCAGGTTTGTTGGAACATGGCACGACG
s caeRem4.Crem_Contig0   706419 316 -  4500979 CTCACTTGTATTGCTCAAATTCAGATTGTTGGATCTTCTTTCCGTCAACCTTGACGACGAATTCCTCATCAGTCTTCTTGATAACAAGTTCTTCCTCACGACGGACAACCTTGACGATGAGTTCGTCAGAGTTCTTGTTCATCTTCTTGGAGAGCACAGCGAAAGTTGGTTGCTCAGAGCAGTCCTTGGCAACAAGGGAGAAGCAGGTAGTGAGTGGGGCACGGTAGATGACGTTGTCGAAGGTGGAGACCTCGGATTGATCAACCTTGCAGGAAGCTCCGGTTTTTTCCCAGACTTGTTGGTACATGGCACGGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1965353 316 +  4147112 CTCACTCGTATAGCTCAAGTTTGGAGGATTCGATCTTCTTTCCGTCAACCTTGACGAGGAACTCCTCATCGGTCTTCTTGACAACAATTTCTTCCTCACGGCGGATAACCTTGACGATGAGCTCATCGGAGTTCTTGTTCAACTTCTTGGCAAGAACGGCGAAAGTTGGCTTTTCGGTGCAATCCTTGGCGATAAGAGAGAAGCAGGTGGTGATTGGGGCACGGAAAACGACATTGTCGAAGGTGGTGGTCTCGGATTGGTCAACCTTGCAGGTGGCTCCAGTCTTCTCCATAACTTGTTGGAACATAGCACGACG
i caePb3.Scfld02_0      I 35 I 6731
s caeJap4.Scaffold18194  222220 316 +   823664 CTCACTCATAGTTCTCGAACTGGGTTCTGCTGATCTTCTTTCCATCAATCTTGACAAGGAAGTTTTCCTCAGTCTTCTCAATGATAACCACATCTGACTGACGGTTAACTTTAACCATGAGCTCTTCAGAATTCTTGTTCATTTTCTTGGCAAGTACGGCAAAGGTAGGCTCTTCAGAGCAGTCTTTCGCCACAAGGGAGTAGCAGTTGGTAAGTGGGGCACGGAAGATCACGTTGTCGAAAGTAGAAACCTCGGACTGGTCGACATTGCAGGAGGCTCCAGTCTTTTCCCAGATCTTGTTATCGATGGCACGGTA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=33958.000000
s ce10.chrX             3568529 106 + 17718866 AGCAATAGTTGGGAGAACGACGCGTGGAATACGAACATTCTTCAACTCAACTTCTTGTTCTGGAGTCTGGATGGTCATGTTCATGTATTGGCGGGAAAGTGGCTCA
s caeRem4.Crem_Contig0   706735 106 -  4500979 AGCGATGGTTGGAAGGAAGACACGTGGGATACGGACATTCTTGAGTTCgacttgttgttgttgagttTGGATGGTCATGTTGATGTCTTGGCGGGAAAGTGGCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1972400 106 +  4147112 AGCAATAATAGAGAGAAAGACTTGTGGAATACGGATATTTTTGACTTCATATTGTTGTTGTGGAGTTGAAATGGTCATGTTGACGTATTGACAGGTGTTTGACTTA
i caePb3.Scfld02_0      I 6731 T 6731
s caeJap4.Scaffold18194  222536 106 +   823664 TGCGATGGTTGGAAGAGCCACACGTGGAATGCGCATGTTTTTGAGCTCAACTTGTTGTTGTGGGGTCTGGAGAGTCATGTTGACGTATTGGCGGGACATGGGCTCG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=227227.000000
s ce10.chrX             3568635 600 + 17718866  
s caeRem4.Crem_Contig0   706841 600 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1965775 606 +  4147112  
i caePb3.Scfld02_0      T 6731 I 6129
s caeJap4.Scaffold18194  222642 600 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=792047.000000
s ce10.chrX             3569235 2361 + 17718866  
s caeRem4.Crem_Contig0   707441 2358 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 15
s caePb3.Scfld02_0      1972510 2351 +  4147112  
i caePb3.Scfld02_0      I 6129 C 0
s caeJap4.Scaffold18194  223242 2358 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=-2309.000000
s ce10.chrX             3571596 48 + 17718866 TTGTGTGCTACTTAAAGTAAATCTTGATACTTTGCAAAAAGCGGAAAA
s caePb3.Scfld02_0      1974861 27 +  4147112 AAGTCtgatttttaaagt-----ttgtttctt----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  225600 31 +   823664 atttttattgttttttgtaaGTTATTGTTCT-----------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   709799 15 -  4500979 I

a score=184455.000000
s ce10.chrX             3571644 572 + 17718866  
s caeRem4.Crem_Contig0   709814 574 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caePb3.Scfld02_0      1974888 569 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  225631 556 +   823664  
i caeJap4.Scaffold18194 C 0 N 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=110974.000000
s ce10.chrX             3572216 336 + 17718866 TTGAGCTCATCGGAAAGCTCACGTTGCTCCAAAGATTTGATTTTTGGCCATTGCTCAGATTGTGGAATGTGGGAAGCAGAGTACTGAATATCAATCAATTGAAGATGAATGTAACGATCATCAACAGCTTGAAGACGGGTACGGCAAGAAATCAGGGTTTGGGAAGCATCGGAAAATGTAGTTGGGAGTCCAGAGAGAAGAAGTCCGTCAAATTTGTAGACGTATTCGCTCTTTGGGGAGAAGGTACGGTCAAGAGCCGGAGAGGCGGCAATCGCCAAGGCGACAAGAGAGGCAATGATTATTGACTTCATTGCGAGAGTGATTATTCCCTTTCCA
s caeRem4.Crem_Contig0   710388 336 -  4500979 TTGAGCTCATCAGAAAGCTCACGTTGCTCCAAAGACTCCATCTTTGGCCACTGCTCGGTTTGTGGAATGTGGGAAGCAGAATAGATGACATCAGTCAATTGAAGGTGAATGTAACGGTCATCGATGGCTTGAATACGAGTACGACAGGAAATACGGGTTTGGGAGGCATCAGAAGAGGTTGTTGGGAGTCCAGAGAGGATGAGTCCATCGAATTTGTAGACGTACTCGCTCTTTGGAGAGAAGGTGCGGTCGAAAGCCGGGGAAGTGGCAATCGCCAAGGCGACAAGAGAGGCAATGATGATCGACTTCATTGCGAGAGTGATTATTCCTCTTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1975457 336 +  4147112 TTTAATTCGTCGGAAATCTCACGTTGCTCCAAAGATTCGAGTTGTGGCCACAGCTCGATTTGTGGGACGTGTGAAGCAGAGAGGACGACGTCGGTCAGTTGAATGTGAATGTTACTGTCATCAATAGCCTGAAGACAAGCACGGCATGATATACGGGTTTGGGAAGCATCGGAATTCAAAGTTGGAATTCCAGAGAGAAGAAGTCCGTTAAAGTTGTAAACATACTCATTCTTTGGAGTAAACGTGCAGTTAAGACCCGGCGAAACGGCAATTGCGAAAGCGACAAGAGATGCAATGATTATCGATTTCATCGCGATGGTGGTTTAACCTACTCCA
i caePb3.Scfld02_0      C 0 I 6126
s caeJap4.Scaffold18142   11483 333 +   343467 TTGAGCTCCTCAGTAAGTTCCGATTTCTCGAACGACTCCTTCTTTGGCCACTGCTCAGATTGAGTCATCTGAGAGTTAAGGTAGATAGCGTCAGTCAGTTGAAGATGAACATATCGGTCATCAATTGCTTGAAGACGAGCACGGCAGGAGAGACGGCTTTGAGAAGCATCAGAATAAGAAGTTGGGAGTCCAGAAAGAAGAAGACCGTCAAACTTGTAAACGTATTCAGTCTTTGGGGAGAAGGTTTTCTCGAGAACTGGAGCAGCGGAAATCGCCAAGGCGACAAGGGAGGCAATGATAATGGACTTCATTGCAAAAGTGATTTTATTTCTG---
i caeJap4.Scaffold18142 N 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=1019.000000
s ce10.chrX             3572552 36 + 17718866 ---GCGTTTCTATTTATACCAGTGTGTTTAATTGACATG
s caeRem4.Crem_Contig0   710724 36 -  4500979 ---GGCACCCCTTTTATACAGGAACACGAAATTGACATG
i caeRem4.Crem_Contig0  C 0 I 1702
s caeJap4.Scaffold18142   11816 37 +   343467 TCGCTTGCTAGTTTTATACTAATGTGGGAAATTGACA--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=802.000000
s ce10.chrX             3572588 96 + 17718866 GCAGGCACTTTGCCTTAGCATATTGAAGTTTTATCATTGTAAATAGATTTTCGGTTAAAAAGTGATTGGCAGTTTTGTAAGTTTTGACTTTATCGG
s caeJap4.Scaffold18142   11853 78 +   343467 -----------GAATTGAAAAATGTAAGCCT-----TTTTTGACAGGTTCCCAG--ATAATGTCTCTGCCAAtcttgtattttttgacattatcaG
i caeJap4.Scaffold18142 C 0 I 1947
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   710760 1702 -  4500979 I

a score=0.000000
s ce10.chrX             3572684 2260 + 17718866  
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e caeJap4.Scaffold18142   11931 1947 +   343467 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   710760 1702 -  4500979 I

a score=6037.000000
s ce10.chrX             3574944 198 + 17718866 GTATCATATCGCAGCGACACCCAATCTCTTTCTCTCCCGCTACGTCATTGTTCCTTTTTTTACATACGCCAAATTTAACGCTGCAAAAGAAATGTCT---TGGCGTCGTGGAGTCTTTTGAGATATTCTTTCTTTTTTCTTGTCTTTT-TTTTTGAAGCGCATCTTTCCTTTTCGTACTTTGTATTGGATTTAGTGCCGAAA
s caeRem4.Crem_Contig0   712462 197 -  4500979 GTGTCTCATGACATGGACACCCAAATTCTATGCCTCCACAAACGTCATTGTTCCTTTTCT----TGCGCCAGATTTTA-GTGGAGAAAGCCGAGTCTCCGTGGAGTTGTggccctttttgagatattctttctttccttttggcttttctttctCCTGCGCATCACTTCTCTCCAaattttgtttcgttttctacgtcagaa
i caeRem4.Crem_Contig0  I 1702 I 682
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e caeJap4.Scaffold18142   11931 1947 +   343467 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=0.000000
s ce10.chrX             3575142 852 + 17718866  
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e caeJap4.Scaffold18142   11931 1947 +   343467 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   712659 682 -  4500979 I

a score=1501.000000
s ce10.chrX             3575994 172 + 17718866 GATAAAAATGCTGGGAAACAATTTTAATGTTGAATGGTAA--------ATGCTTTTTAACAATTT----TTCGCTGAGCATACCTCACCTTTAAAAATTTTCTTAGCTCTAAAAT---TCCTTTCGGTT-------TTCAGTTTTTTG----------AACACCTTTATTTGCCAACACTGTTTTCCTAATTTTCATTGCAAAA
s caeJap4.Scaffold18142   13878 185 +   343467 gaaaaaaacgcttgaaagaaattttgagattg--tgagaattttttccattttttttaattttttgatttttgatgaaaatatC----------AAATATTCT--GTTTTGGAATAGGTGTTTCTGGTTATTttagtttaattttttatatttataatGATGCCACTAACTTTCAACatcatt-----aattttcttttcagga
i caeJap4.Scaffold18142 I 1947 I 9
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   712659 682 -  4500979 I

a score=0.000000
s ce10.chrX             3576166 14 + 17718866 CATATATCTGAAAT
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e caeJap4.Scaffold18142   14063  9 +   343467 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   712659 682 -  4500979 I

a score=216.000000
s ce10.chrX             3576180 166 + 17718866 TTTTTTTTTTGAAAATCCTAGCATTTTACATATTCCAGCAAACTTTTTTTTGACCATCCAATACCGTGGGAAACTTTCGTCATTTTGCATTGCGTTTCTTCTCTCCTTACCGATTTTTTTCATTTTTTTCTAT---------GCTTTAATATTTGCCGACAAAGTTATCTAACCA
s caeJap4.Scaffold18142   14072 129 +   343467 tttctcttttgaa-----ttttatttttgttattc--------ttcttctt-----------------------tttttccatattacattgtgttcttttatt--ttaaatgtttctcttgttttgttctttaaaataaaagaaataattTGTGT-----AAATTATctga---
i caeJap4.Scaffold18142 I 9 C 0
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   712659 682 -  4500979 I

a score=0.000000
s ce10.chrX             3576346 3 + 17718866 CTT
e caePb3.Scfld02_0      1975793 6126 +  4147112 I
e caeJap4.Scaffold18142   14201 0 +   343467 C
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I
e caeRem4.Crem_Contig0   712659 682 -  4500979 I

a score=1956.000000
s ce10.chrX             3576349 14 + 17718866 TGTTCTGAGAATAT
s caeRem4.Crem_Contig0   713341 14 -  4500979 TGATTTGGAaatat
i caeRem4.Crem_Contig0  I 682 I 6
s caePb3.Scfld02_0      1981919 14 +  4147112 tgctcTCGATATGC
i caePb3.Scfld02_0      I 6126 C 0
s caeJap4.Scaffold18142   14201 14 +   343467 tattttgaaaaatt
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8690382 10422 + 21540570 I
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=-3015.000000
s ce10.chrX             3576363 18 + 17718866 ---TAAAATA--AAATCAAA---ATT
s cb4.chrX              8700804 21 + 21540570 ---tGAAATC--GAGTAAAAAATTGC
i cb4.chrX              I 10422 C 0
s caeRem4.Crem_Contig0   713361 20 -  4500979 ---tgaaatctgAAGTAATA---TGC
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0      1981933 18 +  4147112 ---TGAgatg--aattgaaa---ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   14215 16 +   343467 tactaAATTC--TAGAAA--------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5710431 6447 + 20921866 I

a score=77480.000000
s ce10.chrX             3576381 439 + 17718866  
s cb4.chrX              8700825 484 + 21540570  
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig0   713381 593 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 65
s caeSp111.Scaffold630  5716878 456 + 20921866  
i caeSp111.Scaffold630  I 6447 I 69
s caePb3.Scfld02_0      1981951 414 +  4147112  
i caePb3.Scfld02_0      C 0 I 382
s caeJap4.Scaffold18142   14231 361 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=260997.000000
s ce10.chrX             3576820 265 + 17718866 ATTTCAGTATTTCTCAGTCGGAATCACGAACAAAATATTTTCTGCGGGATTCGGAACCGAACACGTGATCTTTCGTGTTTTCGGTCACAACACCAACAAGGTCATTGATCGGGAGAACGAGGTGATCGCATGGAAACAACTGGCAGAATATGGATTCGCTGCTCCTCTTTATGGAAAATTTAATAATGGATTGATTTGCGGATTTTTGGAGGGAAAAAGTCTAGCGATTGAACAGATGAGAGACTCGAAATTTAATATGTAAGTT
s cb4.chrX              8701399 260 + 21540570 ttttcagtatttctcaGTCGGCATCACTAACAAAATCTTCTCCGCTGGATTCGGAACCGAACACGTGATCTTTCGTGTCTTTGGTCACAACACCAGCAAGGTTATTGACCGGGAGAATGAAGTGACCGCGTGGAGACAGTTGGCAAAACATGGATTCGCTGCTCCCCTCTACGGAAAGTTCAACAACGGACTCATCTGTGGATTTCTGGAGGGGAAGAGTTTGAAGATCGAGCAGATGAGAGATTCTCGTTTCCATATGT-----
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   714039 265 -  4500979 ATTTCAGTATTTCTCCGTTGGAATCACTAATAAGATCTTCTCCGCTGGATTCGGAACTGAACATGTGATCTTTCGTGTTTTCGGTCATAACACAAGCAAGGTCATTGATCGGGAGAACGAGGTGACCGCGTGGAGACAATTGGCAGAACATGGGTTTGCAGCTTCTCTCTATGGAAAGTTCAACAACGGGCTCATTTGTGGATTTTTGGAAGGAAAGAGTTTAAAGATCGAAGAGATGAGGGACTCCCGTTTCCATGTGTATGTT
i caeRem4.Crem_Contig0  I 65 I 39
s caeSp111.Scaffold630  5717403 265 + 20921866 ttttcagtatttcTCAGTTGGTATCACCAACAAAATCTTCTCCGCTGGATTCGGGGGCGAACATGTGATCTTTCGTGTTTTCGGCCACAATACAAACAAGGTCATTGATCGAGAGAATGAAGTGACTGCGTGGAGACAGTTAGCAGAACATGGTTTCGCAGCTCCCCTCTACGGAAAGTTCAACAACGGACTCATTTGTGGCTTTTTGGAAGGCAAAAGTCTGAAAATCGAGGAGATGCGAGACTCTCGTTTTCATGTGTAtgtt
i caeSp111.Scaffold630  I 69 I 36
s caePb3.Scfld02_0      1982747 265 +  4147112 ATTTTAGTATTTCTCTGTCGGAATCACCAACAAAATCTTCTCTGCTGGATTTGGAACCGAACACGTGATCTTTCGTGTTTTCGGTCATAACACTAACAAGGTCATTGATCGAGAGAACGAAGTCACCGCGTGGAGACAATTGGCGGAACATGGTTTTGCAGCTCCCCTCTATGGAAAGTTCAACAACGGACTCATTTGTGGCTTTTTGGAAGGCAAAAGCCTGAAGATTGAGGAGATGAGGGATTCTAGTTTCCACGTGTatgtt
i caePb3.Scfld02_0      I 382 I 19
s caeJap4.Scaffold18142   14592 263 +   343467 --ttcagtatttttccGTTGGAATTACAAACAAAAtcttcgccgccaattttgaagaCGACCATGTGATTTTTCGTGTCTTCGGTCATAACACCAACAAGGTTATTGATCGCGAAAACGAGGTGATCGCATGGCGCAAACTTGCCGAGTACGGTTTTGCAGCTCCTCTCTACGGTAACTTCAACAATGGATTGATTTGTGGATTTTTGAAAGGAAAGAGCTTAATCATTGATCAAATGAGAGATGCTCGTTTTCATGTGTAAGTT
i caeJap4.Scaffold18142 C 0 C 0

a score=-2011.000000
s ce10.chrX             3577085 60 + 17718866 CTGAACTAAATTGTTCAGCTTTCAAATATTTTTACAAATT----TAT--GTGGAAGTTCCAGTCAA
s cb4.chrX              8701659 35 + 21540570 ----------TTGTTtgcatttcaaaaatagtcgAAA---------------------CAAGTCCA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   14855 62 +   343467 ---TTGTAAATTG-TAAACTTTCGGttattttgtgaaattttgatATTGGTGTATTTTTTAGtcaa
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1983012 19 +  4147112 I
e caeSp111.Scaffold630  5717668 36 + 20921866 I
e caeRem4.Crem_Contig0   714304 39 -  4500979 I

a score=182.000000
s ce10.chrX             3577145 2 + 17718866 AA
s cb4.chrX              8701694 2 + 21540570 AA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1983012 19 +  4147112 I
e caeJap4.Scaffold18142   14917 0 +   343467 C
e caeSp111.Scaffold630  5717668 36 + 20921866 I
e caeRem4.Crem_Contig0   714304 39 -  4500979 I

a score=0.000000
s ce10.chrX             3577147 423 + 17718866 TCTTGCTATCAAATGTTTTGCAAAATTATCGAAAAGTTGAAGTTTTTATTTGCTTTATTTTTTTTATTAGCTTTGTTCCTCTGCAAGCTAATCGAAAACTAGTCTTTCAGTTTCCATAAGCTCTGTGATTTAATAGTGAACATTTTGATCAGTTCTCTGCGTTCAAAGCATCAACAAAATTTTTGAAAAATTTGTATATTTTGAGGTTAAGACTCTATAAAACCAGGATTTTGTTGAAGAGCGTTCGAGAAAAAAGTATTGCCGTCAGTAAATTGAAACAGTAGGCTAGAAAAAAAAATGCATGCAGGCATTTAATAATGCCTACCTAAAATCTTTTAATAATTACGCCTACCAAAAAGTAGGCTCTATTAATTTTAATGGTTTTTGAAGGTTAATTGATTCAAATTGAGCATTCCAAACTTG
e caePb3.Scfld02_0      1983012  19 +  4147112 I
e caeJap4.Scaffold18142   14917   0 +   343467 C
e cb4.chrX              8701696   0 + 21540570 C
e caeSp111.Scaffold630  5717668  36 + 20921866 I
e caeRem4.Crem_Contig0   714304  39 -  4500979 I

a score=55.000000
s ce10.chrX             3577570 17 + 17718866 AAATCTAATATAATATG
s caePb3.Scfld02_0      1983031 17 +  4147112 aaagaggaaAGAATAAA
i caePb3.Scfld02_0      I 19 C 0
e caeJap4.Scaffold18142   14917  0 +   343467 C
e cb4.chrX              8701696  0 + 21540570 C
e caeSp111.Scaffold630  5717668 36 + 20921866 I
e caeRem4.Crem_Contig0   714304 39 -  4500979 I

a score=8263.000000
s ce10.chrX             3577587 10 + 17718866 TTCCAGGAAC
s cb4.chrX              8701696 10 + 21540570 TTTCAGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   714343 10 -  4500979 tttcagGAAC
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  5717704 10 + 20921866 TTGCAGGAAC
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      1983048 10 +  4147112 TTTCAGGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   14917  0 +   343467 C

a score=222979.000000
s ce10.chrX             3577597 425 + 17718866 ATTGCCAAAAGAATTGCCCAACTTCACTCTTCCGTTCCAACCAATGGAAAAACTCCAGTGTTTGAAAAAATGCGAACATTTTTACAACAGCTGAATCCGTCATTTGAAAAAGAAAGCCAACAGG--T----AATTTT----AATTTCCACGTCAGAAA----ATAAAATTGTTCATTGATATTA-CAGAATTTTTTCCACGAGAACTTTCCAACTGATCTAGGAGCAGAAATTTCCAAAATTGAAAAGATGATCGTAATGCTAAAAGAGCCAATTGTATTCTGTCATAACGACCTTCTTGTGCACAACATTGTGTATGACAGTGAGAAGAAATCAATCGAATTTATTGACTATGAATATGCATTCCCAAATTATGCTCTATACGACATTGCCAATCACTTTTGTGAATATGCAGGTACCTTTTTTAGTTTTGCAAATTTT
s cb4.chrX              8701706 410 + 21540570 ATTGCCAAGAGAATCGCCCAACTTCACGCTTCTGTTCCGACCAATGGAAAGACACTGGTGTTCGAAAAGATGCAGGAATTCTTGAAACAGTTAGACCCGAAATTCGAGGATGCTACAAAACAgg--tcagaagaa------aaagaaaaggttaAACT----GGAAAAT----------CATTTACAGGAATTTTTCGTGACCAACTTCCCACAAAACCTTGCCGCCGAAATCGAGAAGGTCGAGAAGCTAGTGATCAAATCCAAAGAGCCGGTAGCTTTTTGTCACAACGACTTGCTGGTCCACAATATTGTGTTCAATGGGGAGACAAAACGCATCGAGTTCATTGACTACGAGTACGCCTTCCCAAACTATGCTCTGTACGATATTGCTAACCATTTCTGTGAATATGCAGGTA--------TGATAATCactttta
i cb4.chrX              C 0 I 425
s caeRem4.Crem_Contig0   714353 398 -  4500979 ATTGCCAAGCGAATCGCGCAACTTCATACATCAGTGCCAAATGATGGCAAAGCCCGAGTTTTCGACAAGATGAGAACGTTCCTGAAACAACTTGATCCGAAGTTTGAGAAGAGTTGTCAGCAGg--t----aaca------aaagaaaaactctGACTTGTCgacaaat-------ttatattttcaggaatttttcGATAAGAAATTCCCAAAAGACTTGGAGgctgaaataaagaaaatcgAGAGCTTGATagtgaaattgaaagaacCAATTGCATTCTGTCACAACGATCTCCTTGTTCACAATATTGTCTACAACTCGGAAAAGAAATCAATTGAATTCATCGACTACGAATATGCTTTTCCCAACTACGCTCTGTTTGATATCGCCAACCACTTCTGCGAGTATGCAGGTA-----------------------
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5717714 419 + 20921866 ATCGCGAAGAGAATTGCACAACTTCACACATCAGTACCAACTGATGGAAAAACTTTGGTCTTTGAGAAGATGtaccaatttttgaaacaattagacaagaattttgagaaaccGGAGCAACAGGTAT----aacttt--tcaatg---aaaacgataa----tgaaaat-------tcaaactt-taGGAGTTCTTCACCAAAAACTTCCCGACAGACTTGGAAGCTGAGGTCAAAAAGCTAGAGCAAATGATCGTGAAGCTTAAGGAACCAGTTGCATTCTGCCACAACGATCTACTTGTTCACAACATTGTATTCaacggagaaaagaaaacgattgaGTTCATCGACTATGAATACGCATTCCCGAACTACGCACTCTATGATATTGCTAACCATTTCTGTGAATATGCAGGTAATTCCTTCCATCAAgtgtagttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1983058 413 +  4147112 ATTGCAAAGAGAATTGCACAACTTCATACATCAGTTCCGACAAATGGAAAATCGTTGGTGTTCGAGAAAATGCACCAATTCTTGAAGCAATTAGACACAAAGTTCGAGAAACCAGGGCAGCAGG--T----AATGTT--GCAATGTCTGGACCAAACT----CTGAAGG-------TTTCATTT-CAGGAGTTTTACGACAAAAATTTCCCTGCAGATTTGGAAGCTGAAGTCCAGAAAGTAGAGAATTTGATTGTGAAACTGAAGGAGCCCATCGCATTCTGTCACAACGATCTTTTGGTTCATAATATCGTAtacaacaaagaaaagaagactaTTGAATTCATCGACTACGAATATGCGTTCCCGAACTATGCATTATACGATATTGCTAACCATTTCTGTGAATACGCCGGTAA-------aaacaacaacttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   14917 411 +   343467 attgcaaaaagaaTTGCTGAGCTTCACAGTTTAATTCCCACTGACGGAAAATCGAGGATATTTGAGAAAACTCGTTCATTCTTGAAGCAGTTTAACCCACAGTTCCAAAATGAAGTACAACAGG--T----TAGGCTCAACAATAACAAAAATGAAAG--TCTAAAAAT-----GGTTATTTTTTCAGGAATTCTTCACAAAACACTTCCCAAATGATTTAGAGGCGGAAATTGAAAAAGTCGAGAGCAAAATAGTGAAGCTAAAAGAACCAATAGTATTTTGTCATAATGACTTGCTAGTCCATAATATTGTTTATAACAGTGAAAAAGAATCGGTAGATTTTATTGACTACGAGTATGCATTCCCAAATTACGCACTGTTTGACATTGCCAACCATTTTTGTGAATATGCAGGTA--------AGTAAAC--------
i caeJap4.Scaffold18142 C 0 C 0

a score=-6696.000000
s ce10.chrX             3578022 47 + 17718866 -TAAAGTTCAATTGTAAGAAATCCTAATTATCTGCAGTATTGTTTTTC
s caeRem4.Crem_Contig0   714759 32 -  4500979 -GAAGATCATgctgaa--------------tttttcttttcaatttt-
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5718133 21 + 20921866 -caaaaacaaattaa-------------------------tgATTTC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1983471 27 +  4147112 -gagaatcaaaatgaa-------------------agctTCACTTTC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   15328 43 +   343467 AAAACATCGAGCAAAA----AACCTTGTACTGTTCCATTCTGTTTTC-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8702116 425 + 21540570 I

a score=157972.000000
s ce10.chrX             3578069 227 + 17718866 AGGCGTCGAAGGATCTCCTGACTACTCAAAATGTTTGACAAAAGACGAGAAGTGGGCATTTATCAACGACTATTTACGTTTTTCAAATGGAAAAGAGCACTCTGACACCCGAATTGCTACAATGTTCAAGAACTTGCTATTGTTTGAAGCAGCC-----------------------------------------------------GCCCATCTTTTCTGGGCTGTGTGGGCACTTGTCCAAGCACAGAATTCAACGATTGACTTTGATTATTTAACGT
s cb4.chrX              8702541 272 + 21540570 AGGAGTCGAGGGCACCCCAGACTATACAAAATGTCTAACCAAGGACGAGAAATGGCTGTTCATCAACGACTATCTTCACttcaaagattccaaaaatcactgCGACGTTCGCATGAAAGCAATGTACAAACATCTTCCGTTGTTCGAAGCTGTAAG--AACATTTTGCGATACTTCCATCTCTAA------ATCTTAATTTCAGACTGCTCATCTCTTCTGGGCCATTTGGGCCCTTGTTCAAGCTCAAAACTCAACCATCGACTTTGACTATCTCACGT
i cb4.chrX              I 425 C 0
s caeRem4.Crem_Contig0   714791 271 -  4500979 aggaGTCGAAGGAACACCAGACTACTCGAAATGTCTGACAAAGGACGAGAAATGGCTTTTCATCAATGACTATCTCCGTTTCGGAAGAGAAAAGGAGCATTGTGATACTCGAATCGCTTCCATGTTCAAGAACTTGCCACTATTTGAGGCCGTTCGTCTAAATGTATCTAAACTT---TATTCAA------TTAGTCATTTCAGGCTGCTCATCTGTTCTGGGCCGTTTGGGCGCTAGTTCAAGCACAAAACTCAACTATCGACTTTGATTATTTGACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5718154 224 + 20921866 AGGCGTCGAAGGCACACCAGACTACTCGAAATGCTTAACAAAGGACGAAAAATGGCTGTTTGTCAACGACTATCTCCGTTTTGGGGGACAGAAGCAT---TGTGATGTGCGAATTGCAGCAATGTTCAAGAATCTTCCATTGTTCGAAGCAGCA-----------------------------------------------------GCTCATCTGTTCTGGGCAATCTGGGCACTTGTACAAACGCAGAATTCAACAATCGACTTCGATTACCTTACGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1983498 273 +  4147112 AGGTGTCGAGGGCACTCCAGACTACTCGAAATGTTTGACGAAAGATCAGAAGTGGCTCTTCATTAATGATTATCTGCGTTTTGGAAGTGAGAAACCTCAATGTGGTGTGCGGATCGCTTCTATGTTCAAGAATCTTCCATTGTTCGAAGCGGTAAGAAGTTATTTGGATATATTTTCCGAACCAA-------TCTAGTTTTTAGGCTGCTCATCTTTTCTGGGCCATCTGGGCACTTGTTCAAGCTCAGAATTCCACGATTGATTTTGACTACTTAACGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   15371 280 +   343467 AGGTGTGGAAGGAGACCCAGATTATTCAAAATGTCTAACAAAAGATGAGAAATGGCTTTTCATCAACGATTATCTTCGTTTTGGAAGCGACAAACAAGTTTGTCCGGATAGAATCGCCGCAATGTTTAAAAATCTTCCACTTTTTGAAGCAGTGAGTTCATAGAatcttaatttttattttctaaatttgcattacatttttaggcagcgcatcttttttggtcgatttGGGCTTTAGTTCAGGCTCAAAACTCTACTATTGATTTTGACTACCTCACGT
i caeJap4.Scaffold18142 C 0 I 37

a score=-9845.000000
s ce10.chrX             3578296 22 + 17718866 TAGGTTTTGCAAACATTTAAAA--------------------------
s cb4.chrX              8702813 22 + 21540570 GAG------------TTTGAGCAATATTTTGGaa--------------
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   715062 10 -  4500979 GAG------------TTTGAAA--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5718378 25 + 20921866 AAg-----------tcttgaat------------tttcaataagaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1983771 20 +  4147112 GAG----------TTCTTGATC------------GTTC------AAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15651 37 +   343467 I

a score=-6828.000000
s ce10.chrX             3578318 35 + 17718866 -------AATACTAACTGTAAATTGTAATTATTAAAATGAGT------
s caeRem4.Crem_Contig0   715072 24 -  4500979 -------------------AACCTTTG--TTTTATGATA---CTCtga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5718403 38 + 20921866 aagagctaaTCTGA--Tacaaactgtt--tttcaaaatgaat------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1983791 30 +  4147112 CAGTGTAAATGTCG---GTGAACTGTT------AAGATT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15651 37 +   343467 I
e cb4.chrX              8702835 19 + 21540570 I

a score=-3097.000000
s ce10.chrX             3578353 53 + 17718866 ATGCAACACAAACAC---TGTCGTTATAAAACGTTTTGAGAAATTTCCCAA---------------AAAAA-------------
s caeRem4.Crem_Contig0   715096 47 -  4500979 --atattacaaaaaaatctttc----tCA---GTCTTAAGAAActtaacaa---------------aaaaa-------------
i caeRem4.Crem_Contig0  C 0 I 50
s caePb3.Scfld02_0      1983821 74 +  4147112 ACGCATTGTGAAGAA---TGTC----TAA---CTTGCTATAAGAGTAATAGTTTGTTGTCTCCTCCAAAACTCCTGTTTGAATc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15651 37 +   343467 I
e cb4.chrX              8702835 19 + 21540570 I
e caeSp111.Scaffold630  5718441  0 + 20921866 C

a score=-1707.000000
s ce10.chrX             3578406 229 + 17718866 GTTGCGACCGTTCAAAGTGTTGGAAAAAGGCGTATTTTACAGCTAAAAT--CTCTGGTAGAAT--TTGAAATTTTATCTGAATATAAGTTTTTTCTCCAAAATTTTTAAATTTTTTTGAGAAATTTTCAGAACATCGGTAGTTTTGGGCAATTCTAAGTCTAAAAAAAATGCGAAGTCTT----CGATTTTGGTAATCCACAATTACTTTCAATAATTTCAGTCAATTAAAGAGACA
s caePb3.Scfld02_0      1983895 189 +  4147112 aacccgatttttttcaaatttgaaaaaaggggttttt----gCTGAAACAACTCTGACTCAACGGCTCCAAT----CCTgcacaaaa-----------aacactttttaacTTATTTGCAAG----CCCAATCAT-------------AAATTCTA--TCTACAAATATCATATTTTCATACAACAACTTTTGTATTTTAAAAC--------ACATTTTC--CTAGTGAACATTGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15651  37 +   343467 I
e cb4.chrX              8702835  19 + 21540570 I
e caeSp111.Scaffold630  5718441   0 + 20921866 C
e caeRem4.Crem_Contig0   715143  50 -  4500979 I

a score=-155.000000
s ce10.chrX             3578635 1 + 17718866 A
s caeSp111.Scaffold630  5718441 1 + 20921866 t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1984084 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15651 37 +   343467 I
e cb4.chrX              8702835 19 + 21540570 I
e caeRem4.Crem_Contig0   715143 50 -  4500979 I

a score=49672.000000
s ce10.chrX             3578636 58 + 17718866 TTTTCAGGTACGCTCACGCTCGATATCAACAATATCAAAAACGTCTTCATAAGTACAT
s cb4.chrX              8702854 58 + 21540570 ttttcagcTACGCTCACGCTCGCTACGAACAATATGAGAAACGGTTCCAAAAGTACAT
i cb4.chrX              I 19 I 1143
s caeRem4.Crem_Contig0   715193 58 -  4500979 tcttcagatATGCCTATGCACGTTATCAACAGTACGAAAAACGCTATCAGAAGTACAT
i caeRem4.Crem_Contig0  I 50 C 0
s caeSp111.Scaffold630  5718442 58 + 20921866 tctacAGATACGCTCATGCTCGTTATCAACAATACGAAAAACGCCTTCAGAAGTATGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1984085 58 +  4147112 TTTTCAGCTATGCCTATGCTCGTTACCAACAATacgaaaaacgttttgaaaagtaCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   15688 58 +   343467 ttttcagttatgcTCATTCTCGTTTCCAACAATACCAAAAACGTTACGAGAAATACTC
i caeJap4.Scaffold18142 I 37 C 0

a score=-1088.000000
s ce10.chrX             3578694 7 + 17718866 ATCGAAA
s caeRem4.Crem_Contig0   715251 7 -  4500979 CTCTGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5718500 7 + 20921866 TGATGGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1984143 7 +  4147112 TGCCACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   15746 7 +   343467 TTCGAGA
i caeJap4.Scaffold18142 C 0 I 4241
e cb4.chrX              8702912 1143 + 21540570 I

a score=2810.000000
s ce10.chrX             3578701 12 + 17718866 ATTGAACATTGA
s caeRem4.Crem_Contig0   715258 12 -  4500979 ACCCAACACTAA
i caeRem4.Crem_Contig0  C 0 I 698
s caeSp111.Scaffold630  5718507 12 + 20921866 CTTCATCACtga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1984150 12 +  4147112 GCTCAACACTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I

a score=546.000000
s ce10.chrX             3578713 2 + 17718866 TT
s caeSp111.Scaffold630  5718519 2 + 20921866 tt
i caeSp111.Scaffold630  C 0 I 762
s caePb3.Scfld02_0      1984162 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I
e caeRem4.Crem_Contig0   715270 698 -  4500979 I

a score=553.000000
s ce10.chrX             3578715  86 + 17718866 AAGTTTACAA--------AAAAAATTATGT--TTCTGTTTTATTTGTGACCCAATCTTGTGA-----TTTCTT----------AAAACTTTTTATTATGTTTAGTAGAAAT
s caePb3.Scfld02_0      1984164 109 +  4147112 TGGAATACaacaaggaacaaaaaaatgtgtaataAAACTTTATAAGTAACATAATTTCATGAGTAACCTTCCTCTGATTCAGAAACATTCTTGATTATG--TGATAGAAAT
i caePb3.Scfld02_0      C 0 I 1031
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I
e caeSp111.Scaffold630  5718521 762 + 20921866 I
e caeRem4.Crem_Contig0   715270 698 -  4500979 I

a score=0.000000
s ce10.chrX             3578801 1464 + 17718866  
e caePb3.Scfld02_0      1984273 1031 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I
e caeSp111.Scaffold630  5718521  762 + 20921866 I
e caeRem4.Crem_Contig0   715270  698 -  4500979 I

a score=100.000000
s ce10.chrX             3580265 1 + 17718866 G
s caeRem4.Crem_Contig0   715968 1 -  4500979 G
i caeRem4.Crem_Contig0  I 698 C 0
e caePb3.Scfld02_0      1984273 1031 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I
e caeSp111.Scaffold630  5718521 762 + 20921866 I

a score=6206.000000
s ce10.chrX             3580266 59 + 17718866 TAAGTAAACAACTTAAATATCACAAAGTTCTTTACTTTAAATATCACACGATTTGTTTT
s caeRem4.Crem_Contig0   715969 58 -  4500979 TGAGTAAACATTGTAAATGCCATCAAGTTCTACCCTGAAAATACCAAGTGTATTGTTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5719283 59 + 20921866 TGGGTAAACATAGTAAATGTCGTGAAGGTCTTTCTAGAAAATGTCAGACAGATTGTTTT
i caeSp111.Scaffold630  I 762 I 243
e caePb3.Scfld02_0      1984273 1031 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I

a score=-1551.000000
s ce10.chrX             3580325 267 + 17718866 CAGACTAGACAGTCCCCAGTGATTTTATGAAT--------AATAATTCTCAATTTGCAAGTGTTTTTTTTATTGAGTATTTTATGTTTTCCACTCTCAAAAACAATGATTTTTATTGATCAAGTCTTGAAGTGACCTT--TATTTCTCTCATGCTACCCTTTAAATTTTCGTTCA-ACATTTCAAATCCCCAGGATGAATGTATAGCGCTGAT--TGACCTTTTGTGGTATAAGGCTCATGGCTTATACTAGG-TCAACAAAAAACCTTTTTTTCTTTTTG
s caeRem4.Crem_Contig0   716027 233 -  4500979 CTGACGAGATGGTCCCTTGATAGTTTA---ATCTCTCTTAGACAGTTCTAGA---ACAGACGTTCCGTTTTATGCATATCCTTAATTGCCAATTTGCATTTA----GATATAcacttttgaaattaaaaaaaaaccttattATACCTCCCTTATTAAC------ATTTTCGATAAGACCTTT----------------ATTTATATGGAAAATCGTGACCTTCT----TATTAGTCCC--TGTCTATTTTGGGCTCTGCAAAAGAACGAAT----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1984273 1031 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8702912 1143 + 21540570 I
e caeSp111.Scaffold630  5719342 243 + 20921866 I

a score=382.000000
s ce10.chrX             3580592 4 + 17718866 TCAA
s cb4.chrX              8704055 4 + 21540570 TCGA
i cb4.chrX              I 1143 C 0
s caeRem4.Crem_Contig0   716260 2 -  4500979 --GA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1984273 1031 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e caeSp111.Scaffold630  5719342 243 + 20921866 I

a score=2784.000000
s ce10.chrX             3580596 24 + 17718866 AAAG---------------TTTTGACATGAACAACAGGA
s cb4.chrX              8704059 32 + 21540570 AAAATTAATGAACAAGtttttttGAC-------GCAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   716262 17 -  4500979 GAag---------------ttttgac-------acaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1985304 17 +  4147112 aaag---------------ttttgac-------ACACGA
i caePb3.Scfld02_0      I 1031 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e caeSp111.Scaffold630  5719342 243 + 20921866 I

a score=88244.000000
s ce10.chrX             3580620 373 + 17718866 --TATACTATCCATAAAACTCGTCA-CTTTCGTACTAGTTGTCACTAAGAAATAAAAAAACACACGCGAGAGAGCACAAGCTTTAATCAAAACTCATTC------CCTTTA----------C--GA--TTTCTAATTTTAACT---------CCCCAAGAAGTGTGATGTCGTCCGCAATCTCCGTTTTCGGCTACTGAATTTCAAATGATGACTTCGT---GCGGAAACGCATG--AAAATTTGCCAGTGTTT---GTGACGTCGGGTCT--------CGAACGTCCCCTCTCGAGTTGTAATGTTTATTAGTCATGAGCAAAAGTCGTTAAATTGGGATG----------------GGAAAACTTGTTGCCAAAAAT-AAATAT-------------------TATTGTTTTTGA------TGTTTAAATGAAAAAAACCCCCACAGCACT-TTGTGTTTTC
s cb4.chrX              8704091 379 + 21540570 TATGTAC-AACCATAAAACTCGTCATTTTTCGTACTAgtcc-------------aaaaag--------------------ttttaatc-AATCTCCCCTTGACTGCTTCCAG---CAACTtg--ga--tttctaattttaacttttcaatCGCT-------GCGTGAT---GTCCGCAATC-------TTGACTGCTGAATTTTAAACGATGACTTCGTGCAGCGGAAACGCATCCCGGAATcttc-aatgtttttgatgaCGTAGGATGTCATGAAGACGAACATCTTCTCCCTCTCAAAATCGTGCATTAGTCATGAAATGGAATCgttaaatttcgaattcaaa-----------aaataactccctgtcaga----aaatatagaatttcgaGAAGCGATATACTATTTTTGGAAGATATGCATAAAAGAACA----------AGCACTCTTgttttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   716279 329 -  4500979 aa--tac-aGCCATAAAACTCGTCA-TTTTCGAACAAGAtc----ttaatgagaaaaaagta------aggAAGC----TTTTTAATC-AAGCCCTTTT------CTTGTA----caattcc--gatttttctaattttaact---------CC-------ACGTGAT---GTCCGCAATC-------TTGACTGCTGAATTTGAGATGATGACTTCGT---GCGGAAACGCATTCCGGAATTTGC-AATGTTT---GTGACGTAG--TTATATGAGAATGAACATC---------------CCGTGCATTAGTCATGAGATGGGATCGTTAAattcagatgaagaa-----------aaaaaactccctGCTAGA----AAACGT-------------------TACTATTTC---------Cgtatcaaaaaaca----------agcact-ttctgttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5719585 322 + 20921866 --TATAC-AACCATAAAACTCGTCA--TTTCGTACTAGTTA----CAaccgatgaaaaaa--------------------ttttaatc-aaaCTCATCC------CTCCAATCTTTTGCTCCAGGC--TTTCTAATTTTAACC---------GC-------GCGTGAT---GTCCGCAATC-------TCGACTgctgaatttcaaatgatgaCTGCGT---GCGGAAACGCATCCCGGCATCCGCTAATGTTT---GTGACGTAG----TTATCAAGATGAACGTCCCTTAT---------TTGTGCATTAGTC-----ATGAAACC--GAATATTTGACGATGGG-----------GAAAAACCCTATGAAAAA----ACATGT-------------------tactatttttga------ta-aaaaataaacg----------aGCACT-TTGtgttttc
i caeSp111.Scaffold630  I 243 I 34
s caePb3.Scfld02_0      1985321 337 +  4147112 --TATAC-AGCCGTAAAACTCGTCA-TTTTCGTACTAGTtgt---caacaga--aaaaag--------------------ttttgatt-aaaCACATTC------TCTCGATTTCCATCTCC--GA--TTTCTAATTTTAACC---------GC-------GCGTGAT---GTCCGCAATC-------TTGACTGCTGAATTTAAAATGATGACTGCGT---GCGGAAACGCATCCCAGAATTTGC-AATGTTT---GTGACGTAG----TTTTCAAGACGAACGTCCGTTAT---------TTGTGCATTAGTC-----ATGGAATCGTGAAATTTAGAAGATGGACCTCCCtggatgaaaaaacaaaaaaaaaatatggaatga-------------------tactatttttga------tataaaaataaaCT----------AGTACT-TTCTGTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I

a score=647.000000
s ce10.chrX             3580993 9 + 17718866 CAGTGCTCC
s cb4.chrX              8704470 9 + 21540570 agactattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   716608 9 -  4500979 agacatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      1985658 9 +  4147112 AAACGTTTT
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e caeSp111.Scaffold630  5719907 34 + 20921866 I

a score=-2287.000000
s ce10.chrX             3581002  5 + 17718866 CA--------------CCC
s cb4.chrX              8704479 16 + 21540570 aGAGGAGA---TGGGTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   716617 19 -  4500979 tgaataagcTTTGAGCGTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      1985667 20 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e caeSp111.Scaffold630  5719907 34 + 20921866 I

a score=207.000000
s ce10.chrX             3581007 1 + 17718866 C
s cb4.chrX              8704495 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   716636 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  5719941 1 + 20921866 C
i caeSp111.Scaffold630  I 34 C 0
e caePb3.Scfld02_0      1985667 20 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I

a score=89639.000000
s ce10.chrX             3581008 238 + 17718866 AAACGCATCAATTAACGTTTGTGTCGAAAATTGAGTTGTTGATCTGAATGCAAAACGAGTCA-AAAGAGAAACAGAAATTCCCCCCCCCCCCCCCCTCAATGATATTTCACTCAATTTC------AAGATGACGTGACAAGGGCAGCATTTTTTATGAGAAAACCGAAGAAGCAACATGAAAAATGAAAAA-------GAAACCCAATAGACTACCAATTTTTGGGC-CACCTAATTAGGTCAATATGTAGAT
s cb4.chrX              8704496 204 + 21540570 AGATGCATCAATTAACGTTTT----AGAAAATGAGTTGTTGATCTGAATGCAAAACAAGTCA-AAA------TAATGAGTCCCT--------------TTTGATAGATGGTTTACTCTT----GGAAAATGACGCGACAAGGACCGAACTTTTCAT-------CTGGAGCGA--AGccgagaagagaaaaa----------actcGACCGActacaaatttcgaaacttgtCTAATT-GATAATTATGCAGAT
i cb4.chrX              C 0 I 2467
s caeRem4.Crem_Contig0   716644 212 -  4500979 AGATGCATCAATTAACGTTTA----GAAAATTGAGTTGTTGATCTGAATGCAAAACAAGTCA-AAA-------AACGAGTCCCC--------------ATTGATAGATGGTTTGCTCTT----GGAAAATGACGTGACAAGGGCAGAACTTTTCAT-------CTGAAGCAG--ATGGGGATagagagaaaaacggagaacaACCGACCGActacaaatttcgaaaa-tatctaATT-GATCATTATGTAGAT
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5719942 205 + 20921866 AGATGCATCAATTgacgtttg---aaaaaaatgagttgttGATCTGAATGCAAAACAAGTCATAGA-------AATGATTCCCT-------------AATTGAGAGATGGTCTACTCTTCTCAGGAATATGACGTGAGAAGGGCAGAACATTTGAC-------ATAAaggga------aaaacaagaaaag----------aaccGATCGACTACCAATTTCAATGT-CGTTTAATT-GTTAATTATGTAGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1985687 208 +  4147112 AGATGCATCAAttaacgtttt----gaaaattgagttgttGATCTGAATGCAAAACAAGTCA-AAA-------ACCGAGTCCCC--------------ATTGATAGATTACATGTTCTTCACTGGAAAATGACGTGACAAGGGCAGAACTTttcat-------ctgaaagaaaaaaagaaaacgagaggaa----------AACCAATCGACTACCAATTCAGAAGT-TGTCTAATT-GATCATTATGTAGAT
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I

a score=-1389.000000
s ce10.chrX             3581246 84 + 17718866 TATTGTGGCAACA-TTTTTTCT--AATTACAAAGAACAATGAGAGAACACCTAAGAACA-----------AACAAAAAAAATTGAAAATGTTGAGAAA-------
s caeRem4.Crem_Contig0   716856 95 -  4500979 TGTTCTAACAACATTTTGTTCAGgaactaaaaagaaaaaagaaca-----cttCGAATGGTCTGCCACGGcataatttaaaattca-atgttgTTGATTGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5720147 67 + 20921866 -----TGGCAACATTTTGTTCCGGAATCA------AAAGTGAACA-----CTGTGGATA------------------TAGAAtgcaaat----aaaaagaagacg
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      1985895 76 +  4147112 -----TAGCCCCG-TTTGTTCCtgaatgaaacaagaaaatgaacg-----ctctgaata------------------taaaattgagacattgagaaatgagaaa
i caePb3.Scfld02_0      C 0 I 1475
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=-2874.000000
s ce10.chrX             3581330 91 + 17718866 GTCGGACCCCTTTTTTGCTATGCTGAAAACGACCAATAAATTGGCACAAGTTTAAGTAGTTTGTTGACTGCGTGGCAAGACCCATTTACAA----------------
s caeRem4.Crem_Contig0   716951 63 -  4500979 ----------------------------------------ATGG-gtgtcttcatttttcttgat--ttgcATGAACA-ACTAATTTCTTATTccatgatttcattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5720224 57 + 20921866 ATCGAA-------TTTG-----------------------TTGG-ATGACTTCACATATCTTGAT--TTGCATGATCA-ACTCATTCTCAA----------------
i caeSp111.Scaffold630  I 10 I 91
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=184.000000
s ce10.chrX             3581421 88 + 17718866 AAGATACGACAAAAATTCTTGTATTTAGGCGTCTACGTAGCATTTCAAA-AACCATATGAACAGAGCCACT--TTACAACTCCTCTTTTAA
s caeRem4.Crem_Contig0   717014 69 -  4500979 ---------------ttgtttggtTTA-------ACGCTGAAGTTCAAACCACTGAACAAATAGGACCACTGACaacaacacaattttcaa
i caeRem4.Crem_Contig0  C 0 I 58
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeSp111.Scaffold630  5720281 91 + 20921866 I

a score=0.000000
s ce10.chrX             3581509 22 + 17718866 GCCTTTTTGGTTGACAAAGCCG
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeSp111.Scaffold630  5720281 91 + 20921866 I
e caeRem4.Crem_Contig0   717083 58 -  4500979 I

a score=-579.000000
s ce10.chrX             3581531 40 + 17718866 ACACATATTTGGAAATTCGGCATCATTCCGTCACTTAACC
s caeSp111.Scaffold630  5720372 12 + 20921866 acacgttttt----------------------------ct
i caeSp111.Scaffold630  I 91 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeRem4.Crem_Contig0   717083 58 -  4500979 I

a score=-1817.000000
s ce10.chrX             3581571 84 + 17718866 GGATGTTCCTT-CTGT--ATTATTCTTTGAGTATCAGTTATCCCGCATCCATTTCTCCTCC--------ATCGAGACTCCTGAAAGATATTTCCA-
s caeRem4.Crem_Contig0   717141 86 -  4500979 GGATGTTCATTGTTGCTGATTTTATGATGATTAGGATTCTTTG---ATTGAATTCATCTTTTA------TTCCAGAATCCCTTTTTATAGTTCCA-
i caeRem4.Crem_Contig0  I 58 I 39
s caeSp111.Scaffold630  5720384 89 + 20921866 ggat-tccatttttat--attgCACTTTGTATTTGGTTTATTG----TTAACCTGTTCtattgttgtttttccaagatccctttcaattttttcca
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=-221.000000
s ce10.chrX             3581655 47 + 17718866 -ATTACCCGAACCCAAAGTCTGGAACTCCA-GTCATCTCCGGCAAAACA
s caeSp111.Scaffold630  5720473 49 + 20921866 gactATTCAATTGTAAAACGCGGTAAGCAGCATTACTCGTGACAAAGAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeRem4.Crem_Contig0   717227 39 -  4500979 I

a score=17346.000000
s ce10.chrX             3581702 135 + 17718866 -TATGCAAGAAACCCATCCGGTTTCCCTGTTGTTTTGAATTCCAAAATATGACGCTGTTTTTTTTTTTCGAGGAATCATCCTATTGTCTTTG--------TGACGTTAATGCTATGTTGCAGACGGAT----------TTTCATCCTGTTGTGG----------
s caeRem4.Crem_Contig0   717266 133 -  4500979 -TTTGCAAGATACCCCTTC-ATTTCTTCGTTGTTTTGAATTCCGGAATTTGACGATGTTTTT-------GTGGAAACATCC--CCATCCTTT--------GGACGTTAATGGCATGTTGCAGACATCT--ATATGTCTTCTTATCCTGTCATCG----------
i caeRem4.Crem_Contig0  I 39 I 60
s caeSp111.Scaffold630  5720522 156 + 20921866 TCCTGCAAGATAccctttc-atttcttcgttGTTTTGAATTCCGGAATTTGACGATGTTTTG-------GTGGAAACATCCGGCCATCTTTTGGAGAGGAGGACGTTAATGGCATGTTGCAGACATTTCAATATGTCTTCTTATCCTGTCTTCGGACTCTTGGC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=-83.000000
s ce10.chrX             3581837 28 + 17718866 TTTGTTCTTC--CTTCTTTCACGTTTCTGT
s caeSp111.Scaffold630  5720678 30 + 20921866 TtctttcatcatcatcctaCAGAATCCCCC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeRem4.Crem_Contig0   717399 60 -  4500979 I

a score=7516.000000
s ce10.chrX             3581865 135 + 17718866 ---CCATTTCACAGATCGCTGACTAAACTTCGTGAGAACTCGGACTGAATTACAAATATAACTAGTTGTGAAGTGACCGGAATGTAATATGTAAGACAAAA------TAAAATCAGAA-CCAT-------CGACGTCAGCGTTATCAGTACA
s caeRem4.Crem_Contig0   717459 125 -  4500979 ---CCCCTTCACGAATTGCTG----AGTTTCA-GAGTACTGAAACTCAAATACACA----GGTAATTGTGCGACGACCGGAATCTAAT--------CAGAG--CCAACAAAATCAGAAGACACAG-----CGACGTCAGCAACGGGAGTaca
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold630  5720708 136 + 20921866 CGATTAAATCACAGATCGCTG----GGCTTCG-GAG-AATGAAA--CAAATATACGTTTTGACTATTGTCCTGTGACCGGAACctaat--------caaaaatctgacaaaatcagaagacgttgcATTCCGACGTCAGCACTGTTAGTACA
i caeSp111.Scaffold630  C 0 I 363
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=33.000000
s ce10.chrX             3582000 148 + 17718866 TTTTTTTCAGTAAAGTAGTCACGCG--TGAGTGCTTGAATACGGAAGACAGAAGACTTGTTTTTTGAA----------------GCTTTTGACAATTTG--GAAACTACAACCCGG-TCTTATGATCTGGTTCAGACAATAAATAACAAACAGAAAACAATCCAGAAAA
s caeRem4.Crem_Contig0   717584 162 -  4500979 atatctgaaa-aaggaaatgaagagaatcGGTCATGTGACACGACAAAACAATGACTTTGTCACTGGATTAGTCAAGATATTGTATTTATGACAACTAACCGAAGACACAACCCGGATTTTCTGACCTG----AGTCGATTGAAGGCAAAT--AACATAACCCGGAAAA
i caeRem4.Crem_Contig0  C 0 I 262
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeSp111.Scaffold630  5720844 363 + 20921866 I

a score=0.000000
s ce10.chrX             3582148 1206 + 17718866  
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeSp111.Scaffold630  5720844  363 + 20921866 I
e caeRem4.Crem_Contig0   717746  262 -  4500979 I

a score=5.000000
s ce10.chrX             3583354 6 + 17718866 TCTAAA
s caeRem4.Crem_Contig0   718008 6 -  4500979 TCCATT
i caeRem4.Crem_Contig0  I 262 C 0
e caePb3.Scfld02_0      1985971 1475 +  4147112 I
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I
e caeSp111.Scaffold630  5720844 363 + 20921866 I

a score=38566.000000
s ce10.chrX             3583360 414 + 17718866  
s caeRem4.Crem_Contig0   718014 528 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5721207 482 + 20921866  
i caeSp111.Scaffold630  I 363 C 0
s caePb3.Scfld02_0      1987446 488 +  4147112  
i caePb3.Scfld02_0      I 1475 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8704700 2467 + 21540570 I

a score=59104.000000
s ce10.chrX             3583774 170 + 17718866 ATGGCTATTTTGAGTGTTCCG--GAGACGCAAATAGCGTGTGAAAAAAAATTTTTTTTTTGATGACACACTTGGTGCGACA--TGGCTT-TTAAACTGAGCTGG------GTTTGCTTAGAAA----------AGTGTGGGAGGATTTGGATTTGAGTCGAAATAAGA-ATGGCTCAAA-GAAGCCGTTTTAG
s cb4.chrX              8707167 185 + 21540570 ACGTCTATTTTCAGCGTTCTGCGGAGACGAAAAT-AAGTGTGGGAAGAAA-----TGTGTGATGACACAAAT-GCAAAAGCTTTTAATT-TTAATCttagttggttttttttttcttaagaCCCCTTTTTTCTAGCGTAGGAGGAATTGGATTTGAGCCAAAACTAGATTTGGGTCAAAAGAAGCCATTTAGA
i cb4.chrX              I 2467 I 71
s caeRem4.Crem_Contig0   718543 161 -  4500979 ACGTCTATTTTGAGTGTGCC-CGGAGACGTAAATAAAATGTGGGAAAA----------TTGATGACACACTT-GCTTAAGA--TGGCTT-TTAATCTCAGTCGG------TTTTCTTAAGACA----------AGCGTAGGAGGATTTGGATTTGAGCCGAAACAAGA-TTAGGTCAATTGAAGCCAGCTAAG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5721689 159 + 20921866 ACGTCTATTTTGAGTGTTCCGGAGAGACACAAATAAAATGTGGGAAAA----------TTGATGACACACTCGTTTTGACA--TCGTTTCTTAATCTTAGTCGC------TTTTGTTAGCATT----------GGCGTAGGAGGATTTAGATTTGAGCCAATTCAGGA-GTGGGTCAAATGAAGCCGT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1987934 161 +  4147112 ACGTCTATTTCGAGTGTTCCG--GAGACGTAAATAAATCGTGAGAAAA----------CTAGTGACACACTTTGCCTGACA--TGGCTT-TTAATCTTAGTCCT------TCAGCTTAAGACG----------GGCGTAGGAGGATTTGGTTTTGAGTCGAAACAATA-CTGGGTCAAATGAAGCCGTTGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I

a score=-5950.000000
s ce10.chrX             3583944  93 + 17718866 -----TCGTCAAACTAATGTTGAGTTGCAACTATCAAAAAATTG-----------AACTCTCTAAAAGACGTAATACTAAA-TTTGTTTTTAGTCTCGGTA------------AATGTCACT-------
s caeRem4.Crem_Contig0   718704 105 -  4500979 -------GGCAAGTACATGACTAGTTGCAA-----AATGACTTGtttttttAT--AATACTTC-TTAGAAATATT--TGGA---TGATGTGCATCCAGCCA----ATTTTTGTAGTAACAATTGACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5721848 107 + 20921866 ---TGAAATTAAGTACATGACGAGTT-----------TGAATTGTTTGTTGTC--ATCCATCTGTGAGACTTATT--TAGATTTTGATTCACATCTCCAGACTG-ATATTTGTGGTATCAGTCGAC---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1988095 112 +  4147112 ATCTGAAACCGGGTGCATGACGAGAG-----------TGATTTGTTTGTTGACAAATTCGTCC-TCAGactgatt--tgaattttgatttataTTCGCTGAAAGCAAATACGTGGTATCAATCGAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I
e cb4.chrX              8707352  71 + 21540570 I

a score=-4159.000000
s ce10.chrX             3584037 184 + 17718866 ACTAAAAGTTATAGTTTTGTCTGTCGCAAATCCCACAATTTTATAGAACA----------AAATGAATGAAAAGG-----AA------AACACCTCCCAAGATCCGATAGATTTTTGATT-----------------TTAGGTTTTTCCTGCA---ATGATTGTTTTCCC---AAAGAAAAAAAAACAAAGTTCTCGAAGC------AACTCATCATCTCTCGTTACAACACCG
s cb4.chrX              8707423 159 + 21540570 -ATCCAAAATTATATTGTGTAGCTCCCaaaa--------------aaaCAACTGAGAATCAAATTGTCTATCagtttcatga-aattcaaagaa------------ttggTTGTTTTGAACCTAAGCAATTGTTTTCTCAAG--------GCA---AAGTTTG---------TATAAACCAACGAACATGGTCC-------------CATTCCCCGTCTC--------------
i cb4.chrX              I 71 C 0
s caeRem4.Crem_Contig0   718809 179 -  4500979 ---ACGAAATAAAGCTATGTCTGTCTGAACT--------------GAACG----------AGGCCTTTCATAAGT-----GA-AATCGAACGAACCCAGAGATATCTTTGTCGTTTGGAC------CAGTTCTTGGACCAGGT------TGCA---ATGAGTGTTTTCAC--TAAAAGTTGAcgaaaaaagttctcaaagCTC--TTCTTTCTCCATCTCCCGTC---AGACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5721955 175 + 20921866 GATTTGAATTATAGTCCAGTCTACTCGAAAT--------------TTACG----------AGT---TCCAAGGAA-----GA------AACACGTCCAAAGATCGGTGTGTTGTTTAGAC------CAA------GGTTAGGTTG----TGCAATGATGATTGTTTTTCC--GACAAGATGACGAACAAAGTTCTTGATGCTCCttctatttcaaatatcCCGGC---AGACTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1988207 180 +  4147112 AATTTGAGTTATAGTCCAGTCTGTCTGAAAT--------------GTACG----------Agtaaatggaaaaga-----gaaaattgaacgCGTCCAAAGATTCGGTCGTTGTTTGGAC------CAA------GGTTAGGTTT----TGCA---ATGATTGTTTTCCCGTGGAAGGTTGTCGAACAGAGTTCTTGATGCTC---CTATTTCCCATCTCCCGAC---AGACCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   15753 4241 +   343467 I

a score=17590.000000
s ce10.chrX             3584221  90 + 17718866 ------AATCTGACTCCAATGTTTTCGTTTTTGTAGACAGCC--------ACAGAGAG-CCAATTATGCTA-TCTAAAAATAGTGACCT--CGCGTTCAGATT----------------GCACA
s cb4.chrX              8707582  88 + 21540570 ---------------------CTATTGTTTTTCAAGAGATTCT--TCTAAAAGAGGAGCCCAATTATCCTATTCTAAAAATAGATCCCT--TATTGCAGGAATACCCc-----------actca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   718988 112 -  4500979 ------AATACGA--CCCCCACTATTGTTTTCCTAGACATCccaaaacagaagaagag-cCAATTATCCGA-TCTAAAAATAGTGACCT--TATGTGAAGAACATGCTGAAAAGCAGAAACACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5722130 104 + 20921866 ------AATCCGA--CCCCCGCGAATGTTTTGCTAGACATCTC--GAAG-AAAGAGAG-CCAATTATCCTA-TCTAAAAATAGTGACTT--AATGTTCCGAACATActgaaaag-----acaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1988387 108 +  4147112 ------AATCCGAC-CCCCCGCAAATGTTTTTCTAGACatccc--aaaacaaaaaaag-ccaATTATCCTA-TCTAAAAATAGTGACCTTATATGCACAGAACATGctgaaaaa-----gggaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   19994  79 +   343467 AATGAGAATCCAA--------------TTTCGCT-----------TCCGTGCAAAGAG-CCAATTATCCGA-TCTAAAAATACTGACCT--CTTGTCCTGATTTAACA----------------
i caeJap4.Scaffold18142 I 4241 I 381

a score=14459.000000
s ce10.chrX             3584311 466 + 17718866  
s cb4.chrX              8707670 357 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   719100 480 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold630  5722234 467 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1988495 524 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20073 381 +   343467 I

a score=-10443.000000
s ce10.chrX             3584777  62 + 17718866 --------------TGCTATGTTTT-----GGTGGattttaatttaaaatttaaaa--------------------------------------ttC----TAAAACTTGACGTTTGATATTT--
s cb4.chrX              8708027  46 + 21540570 --------------TACAa-----------catagttttt------------------------------------------------------ttcagatttgttcCAGAGAGAGGAaacagct
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5722701  59 + 20921866 ---------ATTCTCGTGAAATTTGCTCCGTGTAGGTTTTGAT---------------------------------------------------TTC----TTGTTAAAGGCAGCTGAAATTA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1989019 111 +  4147112 TGTTAAAGTATTcgtgtgaattttttt---tgtaatttttcatt-----tctaccAATTTTGACAAATCAGGATAGCCCGCTCAAGAAGTTCATTTC----TTGTTATGAGCAGCTGAAATTA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20073 381 +   343467 I
e caeRem4.Crem_Contig0   719580  39 -  4500979 I

a score=28835.000000
s ce10.chrX             3584839 171 + 17718866 ----------GAAGT-----CTTAATTCTATTTTTGGTGGTTCTTACAATACATGCAATTCTAGGAATCATTCTTCAGTGACCCTATCCGTCT-----AGAAAAAGATAATAT--AAACTCAACTACTCTCATTCCTTTTTTTGGGCAATGTTCA---AAAAGAGGGAGCCGGCAAAAGAGATAG--ACGGA----TCGAAA
s cb4.chrX              8708073 176 + 21540570 ----------gaaatttttagag-ccTCTATTTCTGGAGGCGCTTATAATATATTCATTCTCAGAGAACGGCATTCATCTTCTCTCTCCCCGCCT---aaaaaaaGACGATATAAAA----AACTACACCA---CtttttttAGGAGAGCATTCT---AAACAAGAAAGAAGCGAAAACGGATAG--AAAACTCCGTGTCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   719619 147 -  4500979 ----------AGAAT-----GTG-GTTCTATTTATAATTATTCCTGTTAAATATTCATTCTTAGAGAACGGCATTCATGCGGTCTTCCCTC-------AAAAGAAGATGATAT--AA----AACTACACCA---CCCTTTT---aggaacatttc---gaaaaaagaa------------gatag--aaaagC---TGGCAG
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  5722760 184 + 20921866 GTAGAGTGGAGAAaa-----ctt-cttctatttttatccGGTCTCATTAAATATGCATTCTCTAAGAACGGCATTCATCCggtcttctcttttcgaaaaaagagagatgatAT--GA----AACTACACCA--TCCTTTCA--GgggaacatttgaaaaagaaaagagaagaagaaaagagatgggAATAGAGC--TCACAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1989130 163 +  4147112 Gtaaggaaaagaaaa-----ctg--ttcTATTTCGGTGTATTCTTATAAAATATGCATTCTTAGAGAACGGCATTCATCCGGTCTTCcct--------aaaaaaagatgatat--aA----AACTACACCA---CCTTTTT--tgggaacatttt---------tgaagagaagaaaagggatAG--AGAAGTC--TCACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20073 381 +   343467 I

a score=22347.000000
s ce10.chrX             3585010 608 + 17718866  
s cb4.chrX              8708249 702 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   719766 768 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5722944 749 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1989293 746 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   20454 525 +   343467  
i caeJap4.Scaffold18142 I 381 I 43

a score=-676.000000
s ce10.chrX             3585618 68 + 17718866 A--AATATGAATCCGAGTGCAGA-GAATTTTGCAAATGGCAT-------------TG---------CTCTA--CCTTCA-------AACCTCAAAACAA----------AAC
s cb4.chrX              8708951 87 + 21540570 a--a--atccattcTGGTGAaagcaaattttggaaatgtcAT-------------TCACCCTAGC-CTCGGCGACTTTA-------TACATTTCATTCATCTCCCAGCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   720534 91 -  4500979 a--aatatccagTCTGctgtga--aaattttggaaatgtcATCGTACTCGGTGCCTCAACCAAACTCCCCATTATTCTA-------AACTTTTCGTCTA----------AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5723693 79 + 20921866 atgaaaattcAGTctggtgaa---aaattttggaaatgtcATCGTA---------TCGCTCGAgt-ctctctccttttc---------ttttgcGAC-A----------ACC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1990039 83 +  4147112 a-aaatattcactctggtgaa---aaattttggaaatgtcaTCGTA---------CC-----AGT-CTCCAGTCCTGACACATATACACTTTACGGCAA----------AAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20979 43 +   343467 I

a score=560449.000000
s ce10.chrX             3585686  945 + 17718866  
s cb4.chrX              8709038 1031 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   720625 1012 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5723772 1007 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1990122 1035 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   21022  935 +   343467  
i caeJap4.Scaffold18142 I 43 I 39

a score=-6344.000000
s ce10.chrX             3586631 35 + 17718866 GT------CAGTTGTATTTC----------------------------TCATTACGATCAT-TCCCACGT
s cb4.chrX              8710069 39 + 21540570 --------cagtttt------tttgtttatc-----------------tcTCTACAACGATTTTGTTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   721637 70 -  4500979 TTCGCCCccagttttgtttcagttgCTTCTCCTCCCGCAGTTCTCAATTCCCAACGATTATCCTTTATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5724779 42 + 20921866 TTTGTCTCCTG----TTCCCAGTT------------------------ATTCAACGATTATCTTCCGGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991157 46 +  4147112 ttcatcTCCAGTTATTTCCCAGTTCC----------------------CTCCAACGATTATCTTTT--CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   21957 39 +   343467 I

a score=-21510.000000
s ce10.chrX             3586666 235 + 17718866 TTTACCGGTTTTATG-----CTCCCTTCTTGTAAAAACTT-CAA-ATTCCGTGATCTCTGCTGGTTT---TTTTTGTACGA---AATTCTTCCTATGAATCTCTCCCTTTCTATCATAGT--------TTCTACTCGTTTTCTTGTTGTATCAGTTTCTATGGAACATTCA-----------------CATTTGGGTCGTTCATTAAATAAA--TTTTCTGTAATTTAAAAATCCAT---------GTTTGTTTTTGTTTATTTTCTTTTCAGTTTTCCAGAAT
s cb4.chrX              8710108 205 + 21540570 TTTActggttttctgaaatcccCATCTCTTGTAAAAATGCCCCGATTTTCGTGATTTCTGTTGGTGGTCCTTTT----------Tccccttctc-----------tcttttttttatgaaA-----CAATCACACCATTT--------------------GGatacatttc----------ctt-ttttgtttgggTTGGTCTTCAAATAAA-TGcttgtaaatttgaaaaaaaaaccctgtTCAAGTGTTgtcttatttttc---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   721707 208 -  4500979 TTTACTGGTTCATGAAACCCCCAATCTCTTGtaaaaacttttct-ttccCGTGATTTTTGCTGGCGG---TTTT----------ACCCCTTTTCATCCGTTccattcttatttttgttttatgaaaCAATCACa-cattt----------------------attcattca----------ttcattctatTTGGATTCGGACTCAAATAAA-TGCTTgtgtaaatgaaaaaaaact---------gtgttctcttctttttct-------------------t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5724821 209 + 20921866 TTTACTGGTTCTCGAA-------CATTCTTGT--AAATTTCCCC-TTTTCGTGATTTTT----GTAGTCCGTACCGGACAT---TCCCCTTTGTATGAATCTCCCT----------TCTT------Ccatcaattcatttcttttttg-------gtttatgAAACaatcttcattt----ctcaacTTATTTGGATT-GGAAACGAATAAACAAAttgt-aaaatgaaaaaaactt---------gtaGTTCCTTCTtgtta--------------------t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991203 225 +  4147112 TCTACTGGTttccaaa----tcttcttcttgt--aAATT--CAT-TTTCCGTGATTTTCGCCGGTGGCCCTTTCCGGAC-----CCTCATTTGTAtgaatctctctctctctctccttct------ctttctctccatctttttccct-------ttctatGGAACAATCACAACATtgaatttatcttttttgggTT-GGACATAAATAAA-ATGTTGT-TAAATAAAACAACagt---------gttctgtttttttcttc--------------------t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   21996 201 +   343467 TTTACTGGTTCCTTT-----GATCTATCTTGt--aatttcctctaattttgtGATTTCCACTTG------TTCTAGGGGATCTGAAATGTACTTGTACGCCAAACCCCTTCTTCCATTTC------ccagaaaatcgtttttaTCGGT-------TCTTATGGAACAATGA--------------ACacttttga--------------aaa-ggtttgt---------------ct---------gttttttattgttgttt----ttctgatttttaaaaat
i caeJap4.Scaffold18142 I 39 I 856

a score=-13618.000000
s ce10.chrX             3586901 38 + 17718866 TTCAGATCAAATTCACAAAGTTATGATTTTTCCAGAAT--------------------------------
s cb4.chrX              8710313 35 + 21540570 ------------------aggaacaaaaaattcagaaagctTC-ATTCTGAAAT----------------
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   721915 53 -  4500979 tgcagatgaaatagataaaataaataaaagctCACAACGGTGA-CTTATCAGAA----------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5725030 54 + 20921866 ttcagaaagaa-----aataaaaagaaagaggatg-ACAGTCATATCCTAATACATTTCA----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991428 68 +  4147112 ttcaggaTAAATAGTTATGATAAAGATGAATGATGAACAGTC--ATCATGATAAATTTTCAGGGGAAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I

a score=697.000000
s ce10.chrX             3586939 52 + 17718866 G---CTCCAAAAATAGAAATTTTTATGAATTCTGTGCAACGaaaaaaaaaagaaa
s caeRem4.Crem_Contig0   721969 41 -  4500979 ATCTTCTCAGAAATAGA--TTCACATGGATTCTATGCAGTAGC------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5725084 29 + 20921866 ---------GAAATaga--ttcaaatgaattctgtgcaat---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991496 35 +  4147112 ----ACCAGggaacaaattttcagctagatGCTGTGCAA----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I
e cb4.chrX              8710348 24 + 21540570 I

a score=38325.000000
s ce10.chrX             3586991 143 + 17718866 aaaaggaaaaagaaaaagcaaaag--cgagaaaaaaTTATG-AAAAACATGACGGCAGATGCAGTTGTTCCTGTTACT-TTATACGAGGTG---TTTTTT---CAGAAGAAAAAATTGGAGATCGAATTAGA----ACT-TGTTT--AGGATCGTTCAAA----
s cb4.chrX              8710372 135 + 21540570 -------------aaaaggaaaaaa-aagtgagaaatcat--aaaaacatGACGAC--ATGCAGATGTTcctgtttccattttttcgcctgtcttttttt---ctgactaaaaaattggagatcGAATTAGTCGC-GCC-TAGTTGAAG--CTGTTCGGA----
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0   722010 145 -  4500979 AGTGGCAGTGAgagaaagcaaaaaa-caagaaaaatttatgaaaaaacatGACGAC--ATGCAGATGttcctgtttct-tttttacggctg---tttttt---ctgttttagaaaTTGGAGATCGAATTAGTCTCAGCC-TGTTT--AG--CAGTTCGGT----
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold630  5725113 140 + 20921866 --------cggagaaaaagaaagcg-aacagaaaaattattgaaaaacatgacGGC--ATGCAGATGTTCCTGTTTCT-TTCCGacacttg---ttttt----ctgcttcGGAAATTGGAGATCGAATTAGTTACTGGC-TGATT--AG--CGGTTCGCTGAGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991531 135 +  4147112 -------------------AAAGCATAGAAGAAAAGTTATGAGAAGGCATGACGGC--ATGCAGATGTTCCTGTTTCT-TCCCAATGGTTG---TTTTTTCTGCTGCCTGAGAAATTGGAGATCGAATTAGTCTTCGGCTTGATT--AG--CGGTTTTGTTGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I

a score=-7611.000000
s ce10.chrX             3587134 34 + 17718866 -------------------------------TTATTTTGATATATTGAGCCCAGAGAGCCTGCTG
s cb4.chrX              8710507 41 + 21540570 AAATTCCGTTTTCCATCTGCATAGAACTCGATCAGTTTCAG------------------------
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold630  5725253 31 + 20921866 -----ATATGct-------------------tcagtttcaa-ttttcagaattgat---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991666 44 +  4147112 -----TCGTGTTCTAT-TGCTT-----CTGATCAGTTTCAG-TATACAGCTCAGAT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I
e caeRem4.Crem_Contig0   722155 47 -  4500979 I

a score=1056.000000
s ce10.chrX             3587168 102 + 17718866 --ATTTTAGAAACTT----------GTAAACAT-TCCATTTCTTTTTGATACTTTTGAT---TCATTAATATTATTGACACCAGAAACC--------TATTAATTCATAAAACAAAATATTTCAAA-
s cb4.chrX              8710559 112 + 21540570 gaaatcgag---atttttgCGGAGAGTAAACATGTTTCaatatttccagaacttttggGTCATCA-TGAAGTTg-tgaaatcgaaaatc-------ttttgaaatcatAGATC--CACATTTTCAG-
i cb4.chrX              I 11 I 1
s caeRem4.Crem_Contig0   722202 101 -  4500979 ATACTTGAA---ATT----------GTAAACAT-TCATATTGTTTTTGAGACTTCTGATTC-TCA-CAAGGTta-cgaaatcaaaaatctacaTAATTACGAAATCAT--------ACATCTTCAA-
i caeRem4.Crem_Contig0  I 47 I 93
s caeSp111.Scaffold630  5725284  92 + 20921866 --tcatcag-aaaat----------ataaacaA-TCCG--TGTGTT-------TTCATA---GCT-CTCCGTta-taaaatcagaaatcggAACAATTATGAAATCGTAGATC---TCAT----AAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991710 101 +  4147112 --ACTTAGG---TGt----------gtaaacat-tttc--tgtttttgagacCTTCGAA---CCA-CAAGGTta-tgaaatcagaaatctgAATAATGACGAAATCATAGATC---TTatcacaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I

a score=-1661.000000
s ce10.chrX             3587270 10 + 17718866 TTCATTACCT--
s cb4.chrX              8710672 10 + 21540570 CTAATGACTT--
i cb4.chrX              I 1 I 57
s caeSp111.Scaffold630  5725376  3 + 20921866 -------TTC--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991811  5 +  4147112 -------ctcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I
e caeRem4.Crem_Contig0   722303 93 -  4500979 I

a score=354.000000
s ce10.chrX             3587280 64 + 17718866 AAAGTGTGTATATCTGGGTAGAAAAT------------ATCCAAAATCCGGATTACTGAATCCTTATTTTTTA-----TTA
s caeSp111.Scaffold630  5725379 58 + 20921866 --------------TGGTAAggagat--------ttttttctagtagTC-GACTACAGacgttttttctgataaaggTCTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1991816 75 +  4147112 aaag-----aaatgaggtaAGAAGATAAGAATTCTCGTTTTCAGTAGCC-GACTACAGATTTATTCTTTGATAAAGGTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I
e cb4.chrX              8710682 57 + 21540570 I
e caeRem4.Crem_Contig0   722303 93 -  4500979 I

a score=353.000000
s ce10.chrX             3587344 9 + 17718866 ---TCCTCCACT
s caeRem4.Crem_Contig0   722396 9 -  4500979 TCATATTCT---
i caeRem4.Crem_Contig0  I 93 I 41
s caeSp111.Scaffold630  5725437 9 + 20921866 ---TGTTCCGTT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      1991891 9 +  4147112 ---TGTTCCGTT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18142   22197 856 +   343467 I
e cb4.chrX              8710682 57 + 21540570 I

a score=27490.000000
s ce10.chrX             3587353 240 + 17718866 --------------------------------------GTTAAAAAGAAGACTTTATTATTTT-CATATGTGCTTATAAAAGAGCTTATAACC-------TG------GAAATGTC-ATAG--ATGTG------------------------------ATCTTT--ACATTTTACCCATT-CTCTTCTAGGGTATAAATACATAAAAGCTCAAACTAGT--T----TTATTTTTAGGAGCGAGAA------AAAAAAACGCGACACAAA---AAGTAGTTGTAAAGA-AAGATTGGTGGTTAGCACAGGAAATAGTATA-CCA------AAAA----AGATTTAGTTCAGTTTCG-----
s cb4.chrX              8710739 217 + 21540570 --------------------------------------atcaaaaataa-------------g-aaaatatc----------------------------tGAGCGAATAAAACAC-ATTT--TAGTC--------------T----------------CTCTC--ACCCCCAC-ATTTC-ATCTC------------TATTCAAAA-CTCGAACCAGT--GTAACTTATTTTGGGA--CCAAGTCTTCCGacaaaaaagcaacaaaa----aagaagttgtATAGATTGGATCGGTCGCTTGTGCAGGAAATAGTATACCCACCCGACAAAACCGGAGAACCAGCtcaattcag-----
i cb4.chrX              I 57 I 35
s caeRem4.Crem_Contig0   722446 274 -  4500979 --------------------------------------ACCAGAAATAA-CCTATAC---TCT-AAGATTTCATTCATGAAAGACTTACAGTTGGAAATGTCAACCAACAAATTCC-ACTTAGAAGTC--------------TAGGAAGTGGAA----ACTATT--GCCTCTTCTATTTCTATCTCTTTGTGTTGCtttatttgaaa-cttgaacaagt--tt---ttatttttgga--gcCAAC------AAAGAAAAgcgacaaaaaaagaagtagtTGTATAGA-AGGATTGGTCGCTTGCACAGGAAATAGTATA-CCACCCGA-AAAAAGACAGATGCAGTTCAATTCAG-----
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold630  5725447 314 + 20921866 ATTGATACGGAAAAACAACCGGGGTGGCACAACAAACAACCAGAAATAA-CCTatat-aatataaaaataggTTTCATGAAAGGCTTACGGTC-------TC------CAAATGTC-ATTC--TCCTC--------------CGGAAATTGAAGTTATATTCTTGAatcgtttccttttt-ctctctttttgttgctttatttaaaa-cttgaacaaagttttattttatttttgga--ttccaC------AGAAAAAGgcgacaaaaaaagaagtcgtTGTATAGAAGGGACTGGTCGCTTGCACAGGAAATAGTATA-CCAcccg--aaaaaga-agaagcagttCAATTCAGCTCAA
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      1991906 324 +  4147112 GTTGATATTG-AAAACAGCC-GGGTGGCTAGATAAACAACCAAAAATAA-CCTATAT-ATCAT-AAGATTTCTTTCATAAAAGACTTACGGTT-------TC------CAAATGTCAATTA--TCTTCCGGTCATTTCAACtcggaaattggaattttattttt-aaccTCTTCTCCCTG-CTCT-TTTATGTTGCTCTATTTGAAA-CTTGAACaaag--ttgttttattttgggaAGCGCCGG------aaaaaaaTgcgac-aaaaaagaagtagttGTATAGAAGGGTTTGGCCGCTTACACAGGAAATAGTATA-CCacccga-aaaaaga-agaagcagttCAATTCAGCTCAA
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I

a score=-2094.000000
s ce10.chrX             3587593 46 + 17718866 GTTTTTTTTTGAGTTCTCTCTTTCCGCTAACATCCGGCTCATC---TAG---
s caeRem4.Crem_Contig0   722720 35 -  4500979 --------CTCAATTCTGTCGT---------CTCCGGCTCATCAGATGGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5725761 27 + 20921866 -------------ATTTGTCACTCT------CTCCGGCTCATC------GCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1992230 31 +  4147112 -------------ATTTGTCACCCT-----CCTCTGGCTCAGC---TCATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I
e cb4.chrX              8710956 35 + 21540570 I

a score=-733.000000
s ce10.chrX             3587639 261 + 17718866 GAATGTTCCAGAA--------AAAGGAGAAACCCTTTTGAAAGTTAACCAAATTTAGACTTTGG-TCAAGTA-AACAATTAGTT------------------------------------ATGTCGCAATATC--TCTGATGGACT--------TTTGATAGATTATGTTCCTTGAAAAACAGGTGATTTTCTTG-TTTTTCATCCCATGTTGGCGACCTTG-------------ATTTATGAAATAAAATCG----------------GTTGGAAGTTTCGAA-------AGAATTCAA---AAAATTTCATCACTTTTGAAGAAAGTTCATCGAATGGTTGAAAACCAATCTTTA
s cb4.chrX              8710991 273 + 21540570 GAAAGTTCTAG------------AAAGGAAACCTCAAGGATTATTGACCGAA-TTGGACTCTGA-TTTGACA-TATTATCAGTTGCTTTTAG----------------------------TTGTTTCTTTTATtgttaaatttgtt-tttcgatCTCAAGACttcattttcctgaaaaagcaggtgatatttttgttttttca---------------tctG-------------GTCCAC-GAATAAACTCGAGAACTACCTCTCCTTGTTTTAAAACTCCTAATTCCTGCAGCTTTGT---AGGGCTT------AACTTGAGATGATCATCCGAACCTTTTA--CTCCatcattc
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   722755 278 -  4500979 GAATGTTCCGGAAtaaacggaaaaaatgaaacctcGTGGATTATTGACCGCT-TTGGACTTTGA-TTCAaca-aattatcagtttttttccggatttttcgattc---------------cggtttctgtttctg-------tgtt-tttcGATCTAAAGTGTTTACGTTCC-ATGAATTCAGGTGATATTTTTG-CATATCA---------------CCTG-------------GTTTA---AGTAAATCCG-----CTCTTCCCCCCGTTTT-AGTTTCACAAT-----CGTTTTTATTCAAGAATTT------ATCTTTAGCCGATCACTGAAACCTTTTG---TCAACCTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5725788 256 + 20921866 GAATGTTCGTGAAGAAAT---AAATAGGACACCACATGGATTATTGACCAAA-TTGAACTTTGATTTCAACACAATTATCA---------------------------------------CTGgtgttttttc--ataaatagaAA----AGTGTTGAACTGTTTATGTTCC-AAGAAAGCAGGTGATATACTTA-CTTATCA---------------CTTGACTCAACCAAACCCCTTA--GTATAAATCTAAAAAGCGGCT----TTCTGttaaattttcca-------aatgttcAATGAATAACT----------TGCAGAAAGTAACTCGATCACTTGT------------G
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1992261 288 +  4147112 GAATGTTCGGgattgga----aaataagaaacctAGTAGATTATTGACCAAA-TTGGACCTTGGCTTTAACAGaattaacaaat-ttttcagattctcctgactttttttggttgtggttctgttttcttttccgacAAATGGATATTTTCGCCCCTAACTGTTTATGTTCC-TTGAAAACAGGTGATACTTTTG-CATATCA---------------Cctg-------------ctttt--cgaaaaatcta-----cGGTTTTAGTTTTGATACCTTTCACA-------CATTTACATTCAAGAACT-------ATCTGTAGAAGATCATTTGAACCTTCAC------------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   22197 856 +   343467 I

a score=76299.000000
s ce10.chrX             3587900 157 + 17718866 TTCCAAGAA-----AATGTGTT-----------CTCCACCTACA-------CAATAA-------AAAAACAC-AAAA----CTCACGCATAATTGCAAAAATACAATGAGAATC----------GGGAGCGCGGCGATGAAGCATGAAATAATCG--TGCT--CCGC----------------GCTTAATTCATATGACGTGTGTCAGAA----------------AAATGAGGAAGT
s cb4.chrX              8711264 201 + 21540570 ttcaaaaaa-----tacgtGTTCTTTCCATCTCCACCCACTTCCTCCGGcatgaaaa-------aagaacacaaaaa----gtcacactcaaatgcaaaaatacaaggaaaaTTAGTCTC----GGCTGCTCGGCGATGAAGCATGTGTTAATCGGTCG-------------GCGAA----AGACTTAATTCATATGACGTGTGgcagaaggagaagaaaaaaaacatataagGAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   723033 176 -  4500979 TTCTTAGAA-----TACGTGTT-----------CACCCGCCCCCTCt---------a-------taaaacac-aaaa----ttcacactcaattgcaaaaatacaAGGAAAATTAGACTC----GGGACCTCGGCGATGAAGCATGAGTTAATCGGTCGCT--CCGTG---CTCCAAGTCTGAGCTTAATTCATATGACGTGTgtcaaaa----------------aaatgaggaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5726044 185 + 20921866 TTCCAGGAA-----AACGTGTT-----------CTTCGCCCCCGTCTCGa--------------taaaacac-aaaa----ttcaCACTCAATTGCAAAAATACAAGAGGAATTAGTGTCGGGGGGCACCTCGACGATGAAGCATGCGTTAATCGGTTGCT--CCGTGTGTCCCAGAGCTTGAGCTTAATTCATATGACGTGCgtcaaaa----------------aaatgaggaagt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1992549 181 +  4147112 TTCCAAGAA-----TACGTGTT-----------CATCGCCccca---cgaaaaaaaaaaacattgaaaacac-aaaa----tgcaCACTCAATTGCAAAAATACAAGGGAAATTAGTCTT---GGGCACCTCGGCGATGAAGCATGAGTTAATCGGGCTCC--CCGGTTGT------------GCTTAATTCATATGACGtgtgtcaaaa----------------aaataaggaagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   23053 170 +   343467 TTCCTAGAAATGTGAATGCGTT-----------CTTTATTTCCACCC---------A-------CTCAGCAC-AACAATATTTCACACTCAGTTGCAAAACCACAACAG---------CC----GGCGTCTCAGCGATGAAGCGT--ATTAATCGGTCTATGACGGCGCGCAAC---------GCTTAATTTAGATGACGTGTGTCGGGG----------------AACAAGAGAaat
i caeJap4.Scaffold18142 I 856 I 686

a score=7466.000000
s ce10.chrX             3588057 90 + 17718866 CGGGCACGATGACTTG-AGTTT------TCAGATTTCCGGTGCGGTTACTATTACTTTGAACATTGAGATGTGTTTTTAAGGTTTGAATAT----TTGTTA-------
s cb4.chrX              8711465 78 + 21540570 CAGGAAAAATgaatct-agtttttcagaattgtttttttt--------ctatt--tttcagacatgAACTATGCTC-------------------TGGTCATTGTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   723209 66 -  4500979 cAGGCACGATGACTTG-AGTTT------ACAGATTTCCGT--------CAATTA-TTTCAGCATCGAACCTTGCT--------------------TGGTCAC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5726229 91 + 20921866 CAGCCACGATGACTcgcaattt------tcagatttccgC--CAATTATTGTTA-TTCCAGATTTGAACTGTGCTCTTTCAGACT-CGTTTGTGGTTGtta-------
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      1992730 81 +  4147112 cAGCCACGATGACtcg-agttt------tcagatttccgc----GCGACTATTA-TTCCAGAATCGAACTCTGCTCTATCAGG----ATTT----CTGTTA-------
i caePb3.Scfld02_0      C 0 I 278
e caeJap4.Scaffold18142   23223 686 +   343467 I

a score=-2891.000000
s ce10.chrX             3588147 33 + 17718866 AATGTCACGAAAATCGTTTTATTCGTTTTGAGT
s cb4.chrX              8711543 25 + 21540570 GGTGTAGT--------GTTTACAGATTTTGTGT
i cb4.chrX              C 0 I 50
s caeRem4.Crem_Contig0   723275 24 -  4500979 -ATTTATT--------GTTGTCATGTTTTGAGT
i caeRem4.Crem_Contig0  C 0 I 475
s caeSp111.Scaffold630  5726326 26 + 20921866 aatttcttcaa-----aatcgcAAAGTTCAT--
i caeSp111.Scaffold630  I 6 C 0
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I

a score=-1231.000000
s ce10.chrX             3588180 12 + 17718866 AGTTGAGTATTT-
s cb4.chrX              8711618 12 + 21540570 AGCTGAAAAGCT-
i cb4.chrX              I 50 I 45
s caeSp111.Scaffold630  5726352  6 + 20921866 -------GGGATT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=377.000000
s ce10.chrX             3588192 38 + 17718866 TATTTGctatgtaggcgccaatac--gcctgccctggctg
s caeSp111.Scaffold630  5726358 35 + 20921866 TATTCGC-----ACGATCCGGCACAAGTCTGTTTTGGttg
i caeSp111.Scaffold630  C 0 I 220
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e cb4.chrX              8711630 45 + 21540570 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=0.000000
s ce10.chrX             3588230 11 + 17718866 tcttgccggcg
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e cb4.chrX              8711630 45 + 21540570 I
e caeSp111.Scaffold630  5726393 220 + 20921866 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=654.000000
s ce10.chrX             3588241 52 + 17718866 atctcctaagctgca---acccgcgccttctgtatagt--gtagctcggaatccaaa
s cb4.chrX              8711675 57 + 21540570 attttttaagccaaatagatctgtatattcaaaaaagtccATTATCCGAAATCCAAa
i cb4.chrX              I 45 I 205
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e caeSp111.Scaffold630  5726393 220 + 20921866 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=0.000000
s ce10.chrX             3588293 123 + 17718866 aagtgtcgggcgctgcaaacagctggcctttgatttcactccagaaaagtggccacgggggcccagtgaggcgcagtaggcgtcaggctatattttaaaccgcccctgcctcccatggaagcc
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e cb4.chrX              8711732 205 + 21540570 I
e caeSp111.Scaffold630  5726393 220 + 20921866 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=281.000000
s ce10.chrX             3588416 15 + 17718866 cACACAATAGTACTT
s caeSp111.Scaffold630  5726613 15 + 20921866 CACTTATTACTTTTT
i caeSp111.Scaffold630  I 220 C 0
e caePb3.Scfld02_0      1992811 278 +  4147112 I
e caeJap4.Scaffold18142   23223 686 +   343467 I
e cb4.chrX              8711732 205 + 21540570 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=-3044.000000
s ce10.chrX             3588431 63 + 17718866 AATTTGACCTCGCATTTCGTTCAGCTTTGTTCCTTTCGCCTACATA-------------------CTTGCTTTTTCAACTTT
s caeSp111.Scaffold630  5726628 77 + 20921866 -ACTT---CTTTCATTTGGTACAATTGCGGAGGTTTC-CGGAAGTGTGTGGTATTTCAAAAGGCAGGTGTTCTTTAGACCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1993089 40 +  4147112 ----------------------AGTTTGTGGTATTTC-AATAGGCA-------------------GGTGTTCTTTAGACCAA
i caePb3.Scfld02_0      I 278 C 0
e caeJap4.Scaffold18142   23223 686 +   343467 I
e cb4.chrX              8711732 205 + 21540570 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=902.000000
s ce10.chrX             3588494 45 + 17718866 ------CTCTATTCTTTTCCAAGTTCAAATTTAGATT-TAAACGT--------TTGAATG-----------
s cb4.chrX              8711937 52 + 21540570 ------ctctttttttttc---------attcaa----caGGTGTTCTTCAGACTAGATGACGTTATTTTG
i cb4.chrX              I 205 C 0
s caeSp111.Scaffold630  5726705 42 + 20921866 GTGACgtctttttcacttc---------attCAAAGT-AAAATGT--------CTGGGTA-----------
i caeSp111.Scaffold630  C 0 I 150
s caePb3.Scfld02_0      1993129 43 +  4147112 GTGACGTCTTTTTTACTTC---------ATTCAAAGTAAAAATGT--------CTGGGTC-----------
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18142   23223 686 +   343467 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=-8004.000000
s ce10.chrX             3588539 105 + 17718866 TGCTTTTAATAG---AACGT-------------------ATG----CAGTGACGTAAGAATA----TGTAAGAACAATATCATTATTTTTTTAAT--------ACTTTGTAAAAATGTGCCAGACAGATCCG--------------------------CTTTAAGAAAA------
s cb4.chrX              8711989 163 + 21540570 CGCATTGCATAGAAAAACGTCTGGGTCCAGATTCCCACGATTAAGTCGTTTATGGAGAAGCACGTTCTCCAGA----ca-cgtagttttttttgaggaaaaatgtTCTAAGAA-------TAGTCAGTGGCGGGGTGAACAAACAAATAAACGATACTAGTCAAAAAATAGAGAG
i cb4.chrX              C 0 I 7
s caePb3.Scfld02_0      1993194  98 +  4147112 CGC-TTGAATAG---CACGT-----TCCAAGCTC-----ATT------TTGACGCGGAAAC-----CACCAGAAtagta-aataatttttttcga--------actttg------------attcaattttg--------------------------attccaGGAATA-----
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18142   23223 686 +   343467 I
e caeSp111.Scaffold630  5726747 150 + 20921866 I
e caeRem4.Crem_Contig0   723299 475 -  4500979 I

a score=-11650.000000
s ce10.chrX             3588644  53 + 17718866 TTTTGACGCAGTTCTTTTTTTTCTCTTGAAA-----------AAATTATTATGAAAA---------------------------------------TACAACC-------
s cb4.chrX              8712159  47 + 21540570 CTCTGATTTCATTTTA---GTTTTCCG---------------AAAATATTCTGA------------------------------------------TGTAGTTTGTA---
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   723774 110 -  4500979 TTTTGACGCAAAATGACTTGTGTTCCGGGAACGAAAAGATAAAAAACATTGTGAAAAGGAGTTCTAAGATTTCATTAGTCCACCCAAAATAGCGTTCGCTTTTTATAGGT
i caeRem4.Crem_Contig0  I 475 C 0
s caePb3.Scfld02_0      1993292  36 +  4147112 CGTTGATGT----------AGATTCTG---------------AACAC---CTGA------------------------------------------AATTTATTGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   23223 686 +   343467 I
e caeSp111.Scaffold630  5726747 150 + 20921866 I

a score=-13698.000000
s ce10.chrX             3588697 156 + 17718866 GACACCTGAAAT---AAGATACAT----CGAG--------------------GCTGAATGCTCAATAATTAGATTTTTTC-----AATAC---GA-----AATTTTGAAATTTTACAAGGTCTAAAAATAGATAAGTTCCATTTCTAA-----------------------TTAGTC---------------AAGATTCG----------TAGAATTTC--AGAAAAACAAAATAATC------------------AG---AAGACG
s cb4.chrX              8712206 209 + 21540570 GACACCTGAAGTTTACGATTGTCTTGTCTGTAAGAGAAA-------------ATCGAGAACTCAATGATCACGATTTTGCTTCTGAATGCCTGAAGACTCAGGCTCAA-----------ATCCAAATATAG--AACTTC-AAATCTAATTAG-------------------TTAGTGAAAAGATGAGCAACCAAGATGCATTAAGTCGGCTGAA---------AATAACATGACCactattgaaaaacaaaagtatAT---AAATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   723884 219 -  4500979 GACACCTGAAATTTATGATTGTCT----GGAAAGGGAAAGGGGTACCCTGTTGTGAAAAACTCAATGATCAAGTTCTGTCGTCTGAATGC---AAATTTCAAGCTTGAAGAATTAC-TGATCCAAAtatag--aatttc-aaaactaattaG-------------------TTAGTG---------------AAGATTCATCAAGAAGgctaaaattc---tgaaaaacataaacattcgtttcagatgaaaacacgttgaaaatat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5726897 185 + 20921866 GACACCTGAAATTGATAGTTGTCT----GGACTAGAagaaaac----------ctcaaaaatcaagatCCTTTT--------CTGAATAT---GA----TACGTATAG---CATGT-TGATCCAAATATAG--CATCTCTCATGCTAA-----------------------TTAGCA---------------AAGGTTCAgtgagaaaactgaaaactt--tgaaaag-atgaaaacaaaaggaaaacaaaga---ac---aagatt
i caeSp111.Scaffold630  I 150 C 0
s caePb3.Scfld02_0      1993328 184 +  4147112 -------------------TAtct----gaagaaggaaaaagtgacCCTTCCGCTGAAAGCTCAATAACCAGTC-----------AATGC---AA-----------------ATGC-TGATCCAAAtttag--aatttcgaaaactaattAGTGAAGATTCATCACGAAGgctaaaa---------------atg-----gaaagaaaactgaaaacctgctgaaaaacataaagtctgatgaaaacaaaaga---ac---aaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   23223 686 +   343467 I

a score=273843.000000
s ce10.chrX             3588853 898 + 17718866  
s cb4.chrX              8712415 819 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   724103 904 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5727082 835 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1993512 859 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   23909 753 +   343467  
i caeJap4.Scaffold18142 I 686 I 622

a score=5746.000000
s ce10.chrX             3589751 12 + 17718866 GGGGATCTGGAA
s cb4.chrX              8713234 10 + 21540570 Agggatctgg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   725007 12 -  4500979 CGGAATCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5727917 12 + 20921866 GGGGACCTGAAA
i caeSp111.Scaffold630  C 0 I 284
s caePb3.Scfld02_0      1994371 12 +  4147112 AGGGATCTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I

a score=846.000000
s ce10.chrX             3589763 3 + 17718866 GTT
s caeRem4.Crem_Contig0   725019 3 -  4500979 GTT
i caeRem4.Crem_Contig0  C 0 I 254
s caePb3.Scfld02_0      1994383 3 +  4147112 GTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I
e cb4.chrX              8713244 0 + 21540570 C
e caeSp111.Scaffold630  5727929 284 + 20921866 I

a score=-35604.000000
s ce10.chrX             3589766 616 + 17718866  
s cb4.chrX              8713244 737 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1994386 416 +  4147112  
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold18142   24662 622 +   343467 I
e caeSp111.Scaffold630  5727929 284 + 20921866 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=419.000000
s ce10.chrX             3590382 42 + 17718866 ATGCTTTTGTTCAAAAATTCACTTTTTTGGAAGCTTATAGAT
s cb4.chrX              8713981 42 + 21540570 tccttttttctcaagaaacCCATCTTGTGACGACAAGTAAAT
i cb4.chrX              C 0 I 101
e caePb3.Scfld02_0      1994802 94 +  4147112 I
e caeJap4.Scaffold18142   24662 622 +   343467 I
e caeSp111.Scaffold630  5727929 284 + 20921866 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=0.000000
s ce10.chrX             3590424 75 + 17718866 ATTTGCACAATTCTTGCTAATTTTAATGCTTAAATTCGATTTACACTGCCAGACGGAAATAATGAATCCGCAAGT
e caePb3.Scfld02_0      1994802 94 +  4147112 I
e caeJap4.Scaffold18142   24662 622 +   343467 I
e cb4.chrX              8714023 101 + 21540570 I
e caeSp111.Scaffold630  5727929 284 + 20921866 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=-16.000000
s ce10.chrX             3590499 6 + 17718866 TCCGGT
s caePb3.Scfld02_0      1994896 6 +  4147112 CTCATT
i caePb3.Scfld02_0      I 94 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I
e cb4.chrX              8714023 101 + 21540570 I
e caeSp111.Scaffold630  5727929 284 + 20921866 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=2193.000000
s ce10.chrX             3590505 24 + 17718866 ATGACGTCACTCCGATTTAC--CACT
s caeSp111.Scaffold630  5728213 26 + 20921866 ATGACGTCTCCCCAAATTAGagctct
i caeSp111.Scaffold630  I 284 C 0
s caePb3.Scfld02_0      1994902 26 +  4147112 ATGACGTAACATTGAGTTATCGCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I
e cb4.chrX              8714023 101 + 21540570 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=-1618.000000
s ce10.chrX             3590529 39 + 17718866 TTTCTTTATCT---ATTCATGCTTCATAAGTTCCGTGATTCG
s cb4.chrX              8714124 30 + 21540570 TTTTTCTGCCT---ATTCAATTTTC------TCCGTGTG---
i cb4.chrX              I 101 I 6
s caeSp111.Scaffold630  5728239 24 + 20921866 tccttttcttttcaactcaCGCGT------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1994928 21 +  4147112 TCTCTTTACTT---ATTCAAACTC------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I
e caeRem4.Crem_Contig0   725022 254 -  4500979 I

a score=74643.000000
s ce10.chrX             3590568 408 + 17718866  
s cb4.chrX              8714160 476 + 21540570  
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   725276 425 -  4500979  
i caeRem4.Crem_Contig0  I 254 C 0
s caeSp111.Scaffold630  5728263 398 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1994949 394 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   24662 622 +   343467 I

a score=225247.000000
s ce10.chrX             3590976 406 + 17718866 ---TCTTCTTTGCTCTCTT------CTTCATCAAGTTCAGGATTGGACATTTTGCTCAAATG------------------------------CTGGTTCTGATTCGCATTATCTTCTTCTCGAGAATCTGAAAATGGAGATGTTTGAGAC-------TGGAATTAGAAT------------TGGAACGAACTTTCACTGGCAGATGAACTAAATCCGTCCAGATTCGTCATTGAGATTGGTTCCATCA---------TGTCGAGTGCTGAAAATGACATATATTTTTGAAACCAAAGTGGATGAAACATTATAAAATAGGAAATTGTATACCAATTGGAAGACCATTTCGTGGGATATGGGTTTTCACTGCATCCTTTCTTGGGAGAGATACTTTGTCGGCAAATTGAGCTTCCGCAAAACTGTTTCGAACGGGAGCACGGCGAATGTCTCCACGGCGAGCACTCAACTAAAA
s cb4.chrX              8714636 389 + 21540570 ---CCGCCTGTTCGTTCTGAGCTCTTCTCGTCATGTTT------------------------------------------------------CTGGTTCTGACCGGCATTATCCGATT---TCGAAGCTGGAATA--TGATCATTGAGGCGACGAGCTAAAACGAGAATCTAGGCAGTGCCAGGCACAAACTTTC---------TGAATCAAATCCGTCCAGATTCGTCATTGAGATGGTTTCCATCATGTCCATGTTGTCCATAGCTGAAAACGACATG----TTTATAA--AAAGGGCA--GAGTAGATCAAAATGGATCAT----CACCAATTGGAAGTCCGTTCCGCGGGATGTGGGTTTTCACGCCGTCCTTTTGTGGAAGTGACACTTTGTCGGCAAATTGAGCCTCGGCAAAACTATTGCGAACTGGAGCACGACGAATGTCACCTCGACGAGCGCTGAGCTAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   725701 359 -  4500979 ---TCGTCTTTGC------------TCTCCTCTGGCTT------------------------------------------------------TTGATTCTGACCGTCATTATCCGCTT---GGGAAGCTGAAATA--TGATCATTGAGGC------TGAAACTAAGAAT------------GGAAACATACTTTCACTGTCATTTGAATTAAATCCTTCGAGATTCGTCATTGAGATTGGTTCCATCA---------TGTCGAGAGCTGGAAGTGACATA----TTTATAA--AAAGGACATGAAACAGATCAAAATGG---AT----CACCAATTGGGATTCCGTTCCTTGGGATGTGGGTCTTCACTCCATCCTTCTGTGGAAGTGACACTTTGTCGGCGAATTGAGCTTCCGCGAAACTATTGCGGACTGGAGCACGACGAATGTCTCCTCGACGAGCACTAAGCTAAAA
i caeRem4.Crem_Contig0  C 0 I 159
s caeSp111.Scaffold630  5728661 357 + 20921866 -----ttttttga------------tttcatcaggttt------------------------------------------------------ttgattctgaccAGCCTCATCTTCTT---GGGACGCTAAAAGA-GTGATCATTGAAGC-------TGGAATAAGAAT------------AGGAACAAACTTTCACTGTCAGCAGAATTAAATCCGTCTAGATTCGTCATTGAGATCGGCTCCATCA---------TATTGAGAGCTGCAAATGGCATG----TTTATAA--AAAGGACATGAAACAGCTCAAAGTAG---AT----CACCAATTGGGAGTCCGTTCCTTGGGATATGGGTTTTCACTCCATCCTTTTGTGGAAGTGACACTTTCTCGGAGAATTGAGCTTCAGCGAAACTATTGCGGACTGGAGCACGACGAATATCTCCACGACGAGCACTAAGCTGTAA
i caeSp111.Scaffold630  C 0 I 92
s caePb3.Scfld02_0      1995343 358 +  4147112 ---ctttctttga------------tttcatcaGGTTT------------------------------------------------------TTGATTCTGACCAGTATTATCCGATT---GAGAAGCTGAAATA--TGATCATTGAAGC-------TAGAATAAGAAA------------AGGAACGAACTTTCACTATCGGCAGAGTCAAATCCATCTAAATTCGTCATTGAAATCGGCTCCATCA---------TGTTTAAGGCTGCAAATGACATG----TTTATAA--AAAGGTTTTAAAGCAGATCAAAATGG---AT----CACCAATTGGGAGTCCGTTCCGTGGGATGTGGGTCTTTACTCCGTCTTTTTGTGGAAGTGACACTTTCTCGGCGAATTGAGCTTCAGCAAAACTATTGCGGACAGGGGCACGTCGAATATCTCCACGACGGGCACTGAgctaaaa
i caePb3.Scfld02_0      C 0 I 181
s caeJap4.Scaffold18142   25284 407 +   343467 tcttcctcttcctcttcctcaTCCTTTTCGCCAGACTC----------ATTTTGTTGTAATGGTGTAAGGGATTCAGATACTGGTTTGGCATTTGAATCTGA---GCCTTAATTAAAG---TAAAATCTAAAATT--AGA---TTCAAAT---------GAGTAAGGGG------------GCAAACGAACTTTCAATCGCAGgagattcaaaattttctagatTTGTCATTGAAATGGGCTCCATGT---------CGTTGAGAGCTGCAAATGACATG----------A--AAACAGCAATTAAAACCTGAATGTTGCTCATT---TACCAATTGGGAGTGCACTTCGTGAGATATGAGTTTTCACGCCGTCCCTATTTCCAAGGGAGACTTTTTCAGCAAATTGAGCTTCGGCAAAGCTATTTCGGACTGGGGAACGACGAATGTCACCACGACGGGTGCTCAGCTGAAA
i caeJap4.Scaffold18142 I 622 C 0

a score=333.000000
s ce10.chrX             3591382 5 + 17718866 ACAAA
s caeJap4.Scaffold18142   25691 5 +   343467 ATAAA
i caeJap4.Scaffold18142 C 0 I 39
e caePb3.Scfld02_0      1995701 181 +  4147112 I
e cb4.chrX              8715025 0 + 21540570 C
e caeSp111.Scaffold630  5729018 92 + 20921866 I
e caeRem4.Crem_Contig0   726060 159 -  4500979 I

a score=0.000000
s ce10.chrX             3591387 16 + 17718866 TCAGTTGCATGGGGAA
e caePb3.Scfld02_0      1995701 181 +  4147112 I
e caeJap4.Scaffold18142   25696 39 +   343467 I
e cb4.chrX              8715025  0 + 21540570 C
e caeSp111.Scaffold630  5729018 92 + 20921866 I
e caeRem4.Crem_Contig0   726060 159 -  4500979 I

a score=-6913.000000
s ce10.chrX             3591403 711 + 17718866  
s cb4.chrX              8715025 419 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      1995701 181 +  4147112 I
e caeJap4.Scaffold18142   25696  39 +   343467 I
e caeSp111.Scaffold630  5729018  92 + 20921866 I
e caeRem4.Crem_Contig0   726060 159 -  4500979 I

a score=846.000000
s ce10.chrX             3592114 3 + 17718866 TCT
s cb4.chrX              8715444 3 + 21540570 TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   726219 3 -  4500979 TCT
i caeRem4.Crem_Contig0  I 159 C 0
e caePb3.Scfld02_0      1995701 181 +  4147112 I
e caeJap4.Scaffold18142   25696 39 +   343467 I
e caeSp111.Scaffold630  5729018 92 + 20921866 I

a score=5244.000000
s ce10.chrX             3592117 27 + 17718866 TTTGACTCTTCTCATGAAACTGTGATT
s cb4.chrX              8715447 12 + 21540570 CTTGACTCTTC---------------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   726222 27 -  4500979 TCTGACTCTTCTCAAGTTACTATCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5729110 21 + 20921866 TTTGActcttg------aaatttgatt
i caeSp111.Scaffold630  I 92 C 0
s caePb3.Scfld02_0      1995882 21 +  4147112 TTTGACTCTTG------AAACTTGATT
i caePb3.Scfld02_0      I 181 C 0
e caeJap4.Scaffold18142   25696 39 +   343467 I

a score=228864.000000
s ce10.chrX             3592144 409 + 17718866 AACCTTGTTGATAACATCCTCCAATTCCTCATCTTCCTGAAACTCGATTCTTGGGCTATCTTCGACCACTTTCTGCTTCTGAGATGGAGCAGGTTGCTAAAATTTGTGAATTCAAT---CAATTTTCAAAACATTT----------------TCTCACTTTAGTGGTAGTTTTGAGCTCTTCCAACTCCTCATTAACTGGATCATCAAATGGCGAAAGTTGGGTCTCTTCGTCAATGTATCTGGCATTATCCTGCTGGTTCACACGAGTCTCGGCAACTCTCCGAGTCACCGGAAGGTCGCGACGGGCTGATGGAGTGGTTGTCCTTCCGCGGAAACGGCGTGGTCTAAAATCAAAAGAAGATGATCAATGGTGAAGTCC----TTGGAAAACGGGGGAAAATTGATT---------------CGAGACTGAAACAT---GTGATTTATG
s cb4.chrX              8715459 374 + 21540570 GACCTTGCTGATCACATCCTCCAACTCTTCATCCTCCTGAAACTCGATTCTTGGCGACTCCTCAACTGGCTTCTTTCTTTCAGATGGAGCTGGTTGCTGAAGATTCTCATCTTTTT---CAGatcatctcatttcct-----------gttcGCTCACCTTGGTCGTCGTTTTCAACTCTTCCA---TCTCATCAACTGGATCATCAAATGGAGACAACTGAGTTTCCTCATCAATGTATCTAGCGTTATCTTGTTGGTTGGCACGTGTTTCAGCAATTCGTCTGGTCACCGGAAGATCACGACGGGCTGATGGAGTGGTTGTCCTTCCACGGAAACGGCgtggtctag----aaaa---------ttatacga----------ttttgatt----------ttgact---------------------tgaaat-----gtgatttctg
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   726249 402 -  4500979 AACCTTGGTGATAACATCTTCTAACTCTTCATCTTCTTGGAATTCAATTCTTGGAGACTCCTCGactggtttctttttttgacttGGAGCAGGTTGcttaaatacaaaaattattt---caaagtttcaaacgTGCC-----------AGT-ATTTACTCTTGTAGTAGTTTTAAACTCTTCCA---ATTCATTTACTGGATCATCAAAAGGCGACAGTTGGGTCTCCTCATCAATGTATCTGGCGTTATCCTGTTGGCTGACTCGAGTTTCAGCAATTCGTCTGGTGACCGGAAGATCACGACGGGCTGATGGAGTGGTTGTCCTTCCGCGGAAACGACGTGGTCTGC----AACA--GATTGATCTATGAGAAAACTC----TTTTGAACCGAG------TCGACT--------------AAATTAATGAAATCAGACGTGATCTCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5729131 395 + 20921866 gaCCTTGCTGATAACAtcttctaattcttcgtcttcttggaattcgattcttggtgcttcttctaccgtcttctttctctg---tGGAGCAGGTTTCTAAAAACTCAATATGTGAT---CCCATTTCatagttttcc-----------gaa-aattacTTTAGTTGTAGTTTTAAGTTCTTCAA---TCTCCTCTACTGGATCATCAAAAGGTGAAAGTTGAACTTCCTCATCAACGTATCTTGCGTTGTCTTGTTGATTAATACGTGTCTCTGCAACTCTTCTGGTGACTGGAAGATCACGACGGGCTGATGGAGTGGTTGTCCTTCCGCGGAAACGACGTggcctga----aaaaaagagtgatcattgaaaaaaggcaTTATTTG--------------CAGACT-------------AAAGTGCCTGATTCTA---GTAgattttg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1995903 403 +  4147112 GACCTTGCTAATGACATCTTCCAATTCTTCGTCCTCTTGGAACTCAATTCGTGGTGCTTCGTCGACtgcctttttcttttg---tggAGCAGGTTGCT-GAAACTCAAattattcttcacttttttccttttttctc-----------aaa-aatcacttttgtaGTAGTCTTCAGTTCTTCCA---TCTCATTAATTGGATCATCGAAAGGTGAAAGCTGTGTCTCTTCATCAATGTATCTTGCGTTGTCCTGTTGGTTAACACGAGTCTCAGCAACTCTTCTGGTGACCGGAAGATCACGACGGGCTGATGGAGTGGTTGTCCTTCCGCGGAAACGACGTGgcctga----aaaa---agtgatcaaaggAAAAGCCC----TTTG--------------CAAAATCGGGGtagactgaaaaattaatgatttCC---GTGAATTTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   25735 389 +   343467 aaccttgctGATAACATCTTCCAGATCCTCATCTTCCTGGAATTCAATCTTTGGAGTCACCTCAGATGACTTCTTGCGTTGGGAAGGAGCAGGTTGCTGAAA--TGAagccattat---ttttttttgtatgtttCCTTCATATTTGAGTT-TATTACTTTTGTAATTGGCTTCAATTCCTCCAGAGTTTCAATTGCTGGATCATCAAATGGAGACAATTGAGTTTCTTCATCAATGTATCTGGCGTTGTCCTGTTGTTTGACATGGCTTTCCACAATTCTTCTTGCAGCAGGCAGGTCGCGGCGCGCGGATGGAGTGGTTGTCCTTCCGCGGAAACGACGAGGCCTaa----aaaa-aGAATGTTTCATaaag----------tt----------------tttatt---------------------caattcat---tttatttata
i caeJap4.Scaffold18142 I 39 C 0

a score=-25745.000000
s ce10.chrX             3592553 97 + 17718866 ATTTACAAGAGTGGTAGGGAGCAGATCATTATA------AAAATCTTTGACTCTTGAAAGTGCAAAACGAAGTTGAAACA-AATGATA-----------TATAATGCTGTTAAAA
s caeRem4.Crem_Contig0   726651 48 -  4500979 --------------------------------AGCTTACATATTT-------TCTGGAC-------ATTGATTTGTATTA-GATAATT--------------------GGTGATA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5729526 84 + 20921866 ------------------------atatttaaatggaagaaaatcttagatgtctgaaa-------aaatattcacaCTATCAGGACATAATTATGAAATGTTCTTCTATGGATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      1996306 64 +  4147112 ------------------------ATTACTAAAACACTCAAAATC-AGGGCCTCTGAAAT------GTGAATTCAATTTACGAGAATA--------------------GCAGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   26124 13 +   343467 ---------------------------------------------------CTCTGGAGTGGCG---------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8715833 37 + 21540570 I

a score=97825.000000
s ce10.chrX             3592650 319 + 17718866 ATGAATT--------------AATACGTAATATACTACTAAATTTTCTACCTATTTAGCGCCAGTAGA---AAATGTAAA---------CATACGTTTGTGTGACTGCAACCTG-------GTTTCGTTGCGAAGGGCTTTCATACTGCTCCATTGAGTTAAAGAATGAGTTTGCAATTTTTCTAGTCGT---TGGCTCTTCTGTAGTT---GTGGT------AGTTGT---TGGGCGAGTTCTTCTTATTCTTGGAGT------------AGTTTTTGTAGATTC---TTCTGTAGTGGTTGTAGGCTCTTCTGTTGTAGTAGTTGGTCGTGTTCTATGAGCTCTAACAACTTTCTTGATAATCTTTTTCACAATCTGAAA
s cb4.chrX              8715870 293 + 21540570 -----------------ATGAATTAGACAGA-TTTCtcaatggatttt----------------ttga---aaat--------------catactCTGGAGT------TGCATG-------TTGTCTTCTAGAGGGTCTGTCTCTCTGCTCCATAGAACTGAAGAAAGAACTCGACA-TTTTTTGGTGGT---TGGCTCTTCTGTAGTG---GTAGTTGGACGAGTTCT---TAGTCTAGTCACTCTG------GTAGTTGTCACTTCCTCAGTTGTACTAGGTTC---CTCAGT---TGTAGTTGGAGTTTCTGTTGTGGTGGT---TCTTGGTCTGTGCGCTCTGATCACTTTCTTGATGATCTTTTtgacaatctgaaa
i cb4.chrX              I 37 I 55
s caeRem4.Crem_Contig0   726702 316 -  4500979 ---------------------AATACATAAT-GGCTATAatcaatctt----------------caaa---aaatgaaaaataagaaaacgtACTCTGGAGTAGCGGAAGCATG-------TTGTCTCTGAGACGTTCTCTCATCTTGCTCCATTGAGTTGAAGAACGAGTTGGATAtttttttGGTTGT---TGGCTCTTCAGTAGTAGTTGTCGTTGGTCTCGTTCT---TGGACTCGTTATTCTTTCCGTCGTAGTTGTCACTTCCTCAGTTGTTGTGGATTC---TTCTGT---AGTGGTTGGAGCTTCTGTTGTAGTA------CGTGGCCTATGAGCTCggatcacttttttgataatcttTTTGACAATCTGAAC
i caeRem4.Crem_Contig0  I 3 I 1
s caeSp111.Scaffold630  5729610 313 + 20921866 AGTGATCTCAGATATTCGTTCAACagaca-------------ttttct----------------ttcaggaaACT--------------CTTACTCGAGGGTTGCTGCAATATG-------TTGTCTTCTAGATGGTCTATCCTCTTGTTCCATTGAATTAAAGAAGgagtttgaaattcttctGGTAGT---TGGCTCTTCAGTCGTT---GTCGTAGTACGAATTCT---TGGTCTGGTTACTCTTTGTGTTGTGGTTATGACCTCTTCTGTTGTTGTAGTTTCAGGTTCAGT---GGTAGTAGGAGTTTCAGTTGTGGTT------CTTGGTCTATGGGCTCTTATCACTTTcttgatgat-tttttgacaatcTAAAC
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      1996370 323 +  4147112 ACTGATTTCTGAATTATGTTT--CAGACAAt-tgaaacaaagtttttt----------------ttga---------------------cataCTCTGGAGTTGCTGCAACATG-------TTGACGAGGGAATGGTTTCTCATCTTGTTCCAtcgaattgaagaaagaatttgaaattcttcttgTGGT---TGGTTCCTCGGTAGTT---GTAGTTGGACGAGTTCTGGGTGGTCGGGTTACTCTCTCTGTTGTAGTTGTAACCTCTTCTGTCGTAGTTGTTTCAGCTTCAGTAGAGGTAGTAGGTGTTTCAGTGGTGGTA------CGCGGTCTATGAGCTCTGATCACCTTCTTGATTATCTTTTTAacaatctgaat
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   26137 263 +   343467 ----------------------------------------------------------------------------------------------------------ACTACATGACTCGGTCTGTCACTTCCAG----TGTCTTGTTCTTCAATTGAGCTGAAAAATGAGCTGACGAATTTTCGAGTGGTTTGTGATTCCGGTGTGGTG---GTTGTTGGGCGAGTCCT---CGGTCGGGTTGGCTTTGGCATGCTAGTTGTTGTTGCAGCTTCTGTGGTTACTTC---TTCTGCAGTAGTTGTTGGCGCTTCTgtcgttgttgttgtttttggtCTATGCGCTCTGATGACTTTTTTGATAATCTTCTTGACAATCTGAag
i caeJap4.Scaffold18142 C 0 C 0

a score=-12241.000000
s ce10.chrX             3592969 85 + 17718866 TTTTAGCATTATTAAAT-----TATCTGTATCGGT-----------TTTTGATTCATCTATGAAGTTTTTTttttcattcttttcattct---tttcattTTGT
s caeRem4.Crem_Contig0   727019 41 -  4500979 ----------------------------------------------TTGCAACATGtctaaacagttttt------------ttcagaccgGATCTGAT-----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5729925 37 + 20921866 ----------------------------------------------TTTT-AGAGGATTACCAAACTTTT---------------ATCCCGGATTTGCC-----
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      1996695 39 +  4147112 ----------------------------------------------ttttcaaaagcttatAAAGTTTTT--------------CATCCCGGATCTAAG-----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   26400 70 +   343467 atttaaaatcaaaaaatgtacatacatacataaattttagaatttatcttgaaaaatctaaaaagtTCTC----------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8716163 55 + 21540570 I

a score=256479.000000
s ce10.chrX             3593054 544 + 17718866  
s cb4.chrX              8716218 535 + 21540570  
i cb4.chrX              I 55 I 42
s caeRem4.Crem_Contig0   727060 537 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold630  5729962 538 + 20921866  
i caeSp111.Scaffold630  C 0 I 31
s caePb3.Scfld02_0      1996734 531 +  4147112  
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold18142   26470 531 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3593598 33 + 17718866 TGCAATTTTTTTTTAATTTTTCATTCTGAAAAT
e caePb3.Scfld02_0      1997265 32 +  4147112 I
e caeJap4.Scaffold18142   27001  0 +   343467 C
e cb4.chrX              8716753 42 + 21540570 I
e caeSp111.Scaffold630  5730500 31 + 20921866 I
e caeRem4.Crem_Contig0   727597 29 -  4500979 I

a score=107059.000000
s ce10.chrX             3593631 138 + 17718866 TACCAAAAGTTCCTTCGAAAATCTATGCTTTCCAGATGGTTGTGGGAATTGCTCATTTTCAAAGTTCACATCATCCAAGTTTTG------TGGTGGTCTTGCAGCTGGCGGACCAGCTTTTGGCGCCGAAACTGCCTCTGAAAA
s cb4.chrX              8716795 138 + 21540570 CACCAAAAGTTCTTTCGAGAATCTCTGCTTTCCAGCTGGCTGTGGGAATTGTTCATTCTCGAAATTCACATTCTCCAAGTTTTGTGGTGTTGGTGGTCGAGCGGCTGGTGGGCCGGC------GCGTGGAACAGGCTCTGGAAA
i cb4.chrX              I 42 I 39
s caeRem4.Crem_Contig0   727626 135 -  4500979 TACCAAAAGTTCCTTGGAGAATCTTTGTTTTCCTGCTGATTGTGGGAATTGCACATTCTCGAAATTAACATTGTCCAGATTCTG------TGGCGGTCTGGCGGCTGGTGGTCCGACTG---ATTGTGTTGCTGCTTCTGTAGA
i caeRem4.Crem_Contig0  I 29 I 3
s caeSp111.Scaffold630  5730531 138 + 20921866 TACCAAAAGTTCTTTTGAGAATCTATGTTTTGGAGCTGGTTGTGGGAATTGCTCGTTCTCAAAGTTAACGTTTTCCAAGTTTTG------TGGTGGTCTAGCTGATGGTGGTCCAGCTGTCTGTGGTGGAATAGCTTCtaaaat
i caeSp111.Scaffold630  I 31 C 0
s caePb3.Scfld02_0      1997297 138 +  4147112 CACCAAAAGttcctttgaaaatctttgttttcctGCTGGTTGTGGGAATTGCTCATTCTCAAAGTtaacattttccaaatcttG------AGGTGGTCTAGCTGATGGTGGTCCGACTGGTTGTTGTGGAACGGCTTCTGAAAT
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold18142   27001 128 +   343467 ----AAAAGCTCCTTGGAGAATCTTTGTTTTCCAGCTGGCTGTGGGAATTGCTCGCTCTCAAAGTTAATAGTCTCCAACTCCTG------TGGTGGTCTTGCAGCTGGAGGACCGTTTGTG------GGAATGGCTTCTGCAAA
i caeJap4.Scaffold18142 C 0 C 0

a score=-14298.000000
s ce10.chrX             3593769 40 + 17718866 ----AGCTTGTTT---------------TCCGAGCAGCTCCAGATAGATGCAATGACTC
s caeRem4.Crem_Contig0   727764 33 -  4500979 ----AAC----------------------ACAAAAACTTCTATATCAATTCTCTTAATT
i caeRem4.Crem_Contig0  I 3 I 2
s caeSp111.Scaffold630  5730669 17 + 20921866 -------------------------------------ttcttc-----tttttttggat
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      1997435 28 +  4147112 -------------------------------AAGATAATTTACATAAACTTAGTTAGAT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18142   27129 55 +   343467 AAAGAACACATGCATACAAATGCCAAAAACAAAGATCATTCTCATTATTATTCTC----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8716933 39 + 21540570 I

a score=261307.000000
s ce10.chrX             3593809 264 + 17718866 ACCAATTGGCTTTTCATTTGCATTCTGCAAAAGTTTGTTCAGAGATTGCTGGAAAATTTGTGCAGCCTTCTGTTCTGACTGAGCCGAGCCAATTTTTTTAACGATATCCTCGACGAGTTGTTGACTGAACACCGGGGTTTCCTGTGGGAATGTAGTTTCTTCGTCTGGAATTGG---CTCAGTGACTGGAAGCTCTTGTTCGACAGGAAGCTCTTCGGTGGTTGAAGTGGTTGGAGGGATTGTGACAAGAGCAAGGGAGACCTGAAA
s cb4.chrX              8716972 267 + 21540570 ACCAATAGGTTTCTCGTTTGCATTCTGCAAAAGCTTGTTCAAAGATTGCTGGAATATTTGTGCAGCCTTTTGTTCTGACTGTGCAGATCCAATTTTCTTCACAATATCCTCGACAAGCTGTTGACTGAAAACTGGAGTTTCCTGTGGGAATGTTGTTTCCTCGTCTGGAATTGGCTCCTCAGTGACAGGCAGCTCTTGCTCGACAGGGACTTCTTCGGTGGTTGTGGTAGTTGGTGGAAGAGTGACGAGGGCCAAGGAGACctgcat
i cb4.chrX              I 39 I 1
s caeRem4.Crem_Contig0   727799 264 -  4500979 ACCAATTGGTTTTTCGTTAGCGTTTTGCAAAAGTTTGTTCAAAGATTGCTGGAATATTTGTGCAGCCTTCTGTTCTGACTGAGCAGATCCAATCTTTTTAACAATATCTTCGACCAGCTGCTGACTGAAAACTGGCGTTTCCTGTGGGAAAGTTGTTTCCTCGTCTGGAATTGG---TTCGGTGACTGGAATTTCTTGCTCAACAGAGATCTCCTCTGTAGTAGAAGTAGTTGGTGGCAGTGTGACAAGGGCGAGGGACACCTAGAA
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold630  5730702 264 + 20921866 accTATTGGCTTCTCATTTGCATTTTGCAAAAGCTTGTTCAATGATTGTTGGAATATTTGTGCAGCCTTCTGTTCTGACTGAGCAGATCCAATCTTTTTAACTATATCTTCGACCAGCTGTTGGTTGAAAATTGGGGTTTCCTGTGGGAAAGTTGTTTCCTCCTCTGGAATTGG---ACCTGTGACTGGAATTTCTTGCTCAACAGGAATCTCTTCGGTGGTAGAAGTAGTTGGTGGAAGAGTTACAAGGGCAAGTGACACCTGGAA
i caeSp111.Scaffold630  I 16 I 32
s caePb3.Scfld02_0      1997473 264 +  4147112 ACCGATTGGCTTCTCGTTTGCATTTTGCAAAAGTTTGTTCAGAGATTGCTGGAAAATCTGGGCAGCCTTCTGCTCCGATTGAGCAGAGCCAATCTTTTTAACGATATCCTCGACCAACTGTTGACTGAAAACTTGTGTTTCCTGTGGGAAGGTTGATTCCTCGTTTGGAATCGA---CTCAGTGATCGGGAGTTCTTGCTCAACGGGAACTTCTTCGGTGGTGGTTGTAGTTGGTGGTAGAGTGACAAGAGCAAGGGAAACCTACAA
i caePb3.Scfld02_0      I 10 I 1
s caeJap4.Scaffold18142   27184 264 +   343467 ACCAATCGGTTTCTCGTTAGCATTGTGCAAGAGTTTGTTCAAAGACTGCTGGAAAATTTGTGCAGCTTTTTGTTCAGATTGAGCAGATCCAATTTTCTTTACAATATCTTCAACGAGCTGTTGATTGAAGAGTGGTGTTTCCTGCGGGAATGTAGTTTCTTCCTCTGGGATTGG---TTCGGTAATTGGAAGTTCTGGCTCAACTGGGAGTTCTTCAGTGGTCGTAGTGGTTGGTGGAATAGTGACTAAGGCAAGAGATAtctaaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-3442.000000
s ce10.chrX             3594073 2 + 17718866 CA-
s cb4.chrX              8717240 1 + 21540570 t--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   728064 1 -  4500979 A--
i caeRem4.Crem_Contig0  I 1 I 33
s caePb3.Scfld02_0      1997738 1 +  4147112 C--
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   27448 2 +   343467 -at
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5730966 32 + 20921866 I

a score=-3989.000000
s ce10.chrX             3594075 35 + 17718866 -GATGTTAAATTTTAATTTGGAAACAAAATTGTTAG
s cb4.chrX              8717241 29 + 21540570 ---ttttgaa----acatttcaaacacaagcgaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1997739  9 +  4147112 ---------------------------AATAGTAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   27450 33 +   343467 gaattttgtaattttttttttgga---aattgataA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5730966 32 + 20921866 I
e caeRem4.Crem_Contig0   728065 33 -  4500979 I

a score=-31402.000000
s ce10.chrX             3594110 603 + 17718866  
s cb4.chrX              8717270 465 + 21540570  
i cb4.chrX              C 0 I 26
s caePb3.Scfld02_0      1997748 306 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   27483   0 +   343467 C
e caeSp111.Scaffold630  5730966  32 + 20921866 I
e caeRem4.Crem_Contig0   728065  33 -  4500979 I

a score=-352.000000
s ce10.chrX             3594713 29 + 17718866 GCCGCTCTATTTACATGAGTGTGGTGAAA
s caePb3.Scfld02_0      1998054 18 +  4147112 ------ctaaaaacttgagCAAGG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   27483  0 +   343467 C
e cb4.chrX              8717735 26 + 21540570 I
e caeSp111.Scaffold630  5730966 32 + 20921866 I
e caeRem4.Crem_Contig0   728065 33 -  4500979 I

a score=-1577.000000
s ce10.chrX             3594742 43 + 17718866 ATTGTTAGTTGAATTTCTACTCCTAACGTTTACTGATTCCCCG
s cb4.chrX              8717761 19 + 21540570 ------------attttgagctagaattt------------cg
i cb4.chrX              I 26 C 0
s caePb3.Scfld02_0      1998072 24 +  4147112 -------ATTGGCTTTCAAATACTAACTT------------CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   27483  0 +   343467 C
e caeSp111.Scaffold630  5730966 32 + 20921866 I
e caeRem4.Crem_Contig0   728065 33 -  4500979 I

a score=-727.000000
s ce10.chrX             3594785 7 + 17718866 TTTCTCA-
s cb4.chrX              8717780 7 + 21540570 attttcg-
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0      1998096 7 +  4147112 TTGTTTA-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   27483 7 +   343467 -TTTATAA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5730966 32 + 20921866 I
e caeRem4.Crem_Contig0   728065 33 -  4500979 I

a score=910.000000
s ce10.chrX             3594792 1 + 17718866 A
s cb4.chrX              8717789 1 + 21540570 a
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   728098 1 -  4500979 A
i caeRem4.Crem_Contig0  I 33 C 0
s caePb3.Scfld02_0      1998106 1 +  4147112 A
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   27490 1 +   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5730966 32 + 20921866 I

a score=219295.000000
s ce10.chrX             3594793 708 + 17718866  
s cb4.chrX              8717790 611 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   728099 635 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5730998 619 + 20921866  
i caeSp111.Scaffold630  I 32 I 5
s caePb3.Scfld02_0      1998107 611 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   27491 543 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-4636.000000
s ce10.chrX             3595501 33 + 17718866 TAATTTAAATTATTATTGCAGTTTTAAACCTCA
s cb4.chrX              8718401  6 + 21540570 ------GAATTT---------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      1998718  8 +  4147112 -------AACTCTCA------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   28034 22 +   343467 ------AAATTATTACACATTTTCAACA-----
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5731617  5 + 20921866 I
e caeRem4.Crem_Contig0   728734  0 -  4500979 C

a score=-6771.000000
s ce10.chrX             3595534 117 + 17718866 CTTCGAAAATTTTAGAAAATATTTTCTATGATATTTGGACGTTCCGCTTCCCAAAGACACATTAATTTTTAATCAGAAATTAATGGAAAAAAATTGTTAAAATCTAGAATGTTCGTT
s cb4.chrX              8718407  14 + 21540570 ---------------------------------------CGTTCTGC-----------------------------------------GAAAAT-----------------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   28056  45 +   343467 CTACATAGACATGTGAAACTA------------------TGTTTAAC-------------------------------------GAGGCAACATTTTTAG-----------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1998726   0 +  4147112 C
e caeSp111.Scaffold630  5731617   5 + 20921866 I
e caeRem4.Crem_Contig0   728734   0 -  4500979 C

a score=-1294.000000
s ce10.chrX             3595651 21 + 17718866 CCTTGCTACTTATGTAGATAT
s caeRem4.Crem_Contig0   728734 14 -  4500979 CCCTGCAAACTCTG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142   28101  6 +   343467 ------TACTTA---------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1998726  0 +  4147112 C
e cb4.chrX              8718421  0 + 21540570 C
e caeSp111.Scaffold630  5731617  5 + 20921866 I

a score=0.000000
s ce10.chrX             3595672 6 + 17718866 GACGAC
e caePb3.Scfld02_0      1998726 0 +  4147112 C
e caeJap4.Scaffold18142   28107 0 +   343467 C
e cb4.chrX              8718421 0 + 21540570 C
e caeSp111.Scaffold630  5731617 5 + 20921866 I
e caeRem4.Crem_Contig0   728748 0 -  4500979 C

a score=753716.000000
s ce10.chrX             3595678 1073 + 17718866  
s cb4.chrX              8718421 1088 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   728748 1028 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5731622 1018 + 20921866  
i caeSp111.Scaffold630  I 5 I 1
s caePb3.Scfld02_0      1998726 1030 +  4147112  
i caePb3.Scfld02_0      C 0 I 248
s caeJap4.Scaffold18142   28107 1017 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-10217.000000
s ce10.chrX             3596751 46 + 17718866 CAAAGCATTCTTGGATATT-TGA--GAGAAATAGATGAAT--ATGGCACTT
s cb4.chrX              8719510 42 + 21540570 gaa---------aagtttcataaagaagaaggaaattcaaagatggcatat
i cb4.chrX              I 1 I 3
s caeRem4.Crem_Contig0   729777 41 -  4500979 Cgagtgaaattcaaattttgtga--------gaaatcGGA--ATGGCATTT
i caeRem4.Crem_Contig0  I 1 I 155
s caeSp111.Scaffold630  5732641 35 + 20921866 cgaatgaaatccGAATTTC-TGA--------GAGAGCGAA--ATGG-----
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold18142   29124 36 +   343467 -TAATGCAAAACCGATTTG-GGAGTAAGTAAGTGAGTG-------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1999756 248 +  4147112 I

a score=-16498.000000
s ce10.chrX             3596797 142 + 17718866 CAATCAAATTTATAGTGAATGAGTGATATAACAAATT--TGATATGTATCTTAAACGTAGGATGA----TGTGAAATTTGGTAGAAATAGATTTCATTACTACGTT----------------AAT------------------TTTTGA----------ATTGCTAGTGAATCTATTCCTTGTAACAAACAA------
s cb4.chrX              8719555 151 + 21540570 tatatatatatatatatat------atatatatattgtttgatatctcacTCAGATTAGAATTTC----CATTTGTATTGGAATTTATGATATTCATTATTGCGTTATGGGAAGTTCGAAATAat-----------------cttttga----------actttcagatgAACAAGTTCAT----CAGACTA------
i cb4.chrX              I 3 I 37
s caeSp111.Scaffold630  5732676 173 + 20921866 CATTCATCATTATGTCCAA------AGATAAGAATTA--TGATCTTT-------ATGAGAGTTGCGCGATAGATatgatgaagaaattgaCTTTCTGAACTTCCTTCCTAGAATATCTAAACAATGGAACTTAAACCAAGAACCTCTGATATCTGAAGTATTTTCAGGATACCATGTTGTt----cagaaaa------
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold18142   29160 109 +   343467 --------AGTGGAAGAAT------GAATGGAAGCTG--TGATAACTAAATT--ATGTAATATCT----ATGttggaatgaaaaaaaaagtattta--------------------------aat--------------------ttaa----------atttcaaggAAATTA-----------TAAACTAAAATGA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1999756 248 +  4147112 I
e caeRem4.Crem_Contig0   729818 155 -  4500979 I

a score=-2841.000000
s ce10.chrX             3596939 11 + 17718866 AACAGAAACAA------------------
s cb4.chrX              8719743 11 + 21540570 AAAATGAATGA------------------
i cb4.chrX              I 37 I 25
s caeRem4.Crem_Contig0   729973 11 -  4500979 AAAGTTAACGC------------------
i caeRem4.Crem_Contig0  I 155 I 20
s caeSp111.Scaffold630  5732850 11 + 20921866 acagtaagcCA------------------
i caeSp111.Scaffold630  I 1 I 6
s caeJap4.Scaffold18142   29269 29 +   343467 ATCATAAATACATATGTATaagcatttca
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      1999756 248 +  4147112 I

a score=348418.000000
s ce10.chrX             3596950 1011 + 17718866  
s cb4.chrX              8719779 1016 + 21540570  
i cb4.chrX              I 25 I 1
s caeRem4.Crem_Contig0   730004 1075 -  4500979  
i caeRem4.Crem_Contig0  I 20 I 1
s caeSp111.Scaffold630  5732867 1048 + 20921866  
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2000004 1072 +  4147112  
i caePb3.Scfld02_0      I 248 I 82
s caeJap4.Scaffold18142   29298 1245 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=144.000000
s ce10.chrX             3597961 1 + 17718866 C
s cb4.chrX              8720796 1 + 21540570 A
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   731080 1 -  4500979 C
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5733915 1 + 20921866 C
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   30543 1 +   343467 C
i caeJap4.Scaffold18142 C 0 I 30
e caePb3.Scfld02_0      2001076 82 +  4147112 I

a score=-5.000000
s ce10.chrX             3597962 5 + 17718866 ATGAA
s cb4.chrX              8720797 5 + 21540570 TTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   731081 5 -  4500979 TTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5733916 5 + 20921866 CAGAA
i caeSp111.Scaffold630  C 0 I 7
e caePb3.Scfld02_0      2001076 82 +  4147112 I
e caeJap4.Scaffold18142   30544 30 +   343467 I

a score=-2667.000000
s ce10.chrX             3597967  5 + 17718866 GTG------------------CT---------------
s cb4.chrX              8720802 38 + 21540570 AtggaaaataggaattttgaattgtgaAAAACTCTGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   731086  5 -  4500979 gtg------------------tt---------------
i caeRem4.Crem_Contig0  C 0 I 104
e caePb3.Scfld02_0      2001076 82 +  4147112 I
e caeJap4.Scaffold18142   30544 30 +   343467 I
e caeSp111.Scaffold630  5733921  7 + 20921866 I

a score=-821.000000
s ce10.chrX             3597972 211 + 17718866 TATACAGTGGTAAGACTAAACGCGGTTTGAGATAGACCTGTGT-----TTTTTTAAGTAGACGGTTATTACTAATATTCAAATTTTAGATTTCTTAACGAACGTTTATAACAAAGGTAACACGGAAAAGTTTGGAAAATTGCAACAAAAACTATCCA----AAAATCATGCGG--------AATAGAC--------------TGAAAATGATTTAGT-TTCAATATTTTCGCAAATGACTTTA
s cb4.chrX              8720840 222 + 21540570 TGTACAA----ATGACCAAA--TTGTTTGCAACAGA---GTATCaccatttttgaagaaaattgtaTATTCTCAAAT---AACATTGATTcactttatctcggttcttgtcaaagatatca---aaaagct------atcaacagataaattgttcatcataataccATAAgtgttttgccagttgacacattttttaatcGTAAAAAAGAAATAGCGTTGACTGCGTTCAAAATTGATTGTA
i cb4.chrX              C 0 I 90
e caePb3.Scfld02_0      2001076  82 +  4147112 I
e caeJap4.Scaffold18142   30544  30 +   343467 I
e caeSp111.Scaffold630  5733921   7 + 20921866 I
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=0.000000
s ce10.chrX             3598183 69 + 17718866 AGTGGGAACTCAAGTTTTTTTTTATCTATATACACGTAATTATACGATCTGTTTATACGTAATCGCACC
e caePb3.Scfld02_0      2001076 82 +  4147112 I
e caeJap4.Scaffold18142   30544 30 +   343467 I
e cb4.chrX              8721062 90 + 21540570 I
e caeSp111.Scaffold630  5733921  7 + 20921866 I
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=-261.000000
s ce10.chrX             3598252 207 + 17718866 ACTTTTCTTGCAGGTTT--GAAATGTTTAGAATGTTCAA-----GATCGGGCTCCTCACTGTTAAAATAACTGTTCACATTCACTACACTTTCTTCAAAATTAATTTAAAGTTAACTTAACTATTCCGATCGA---AATTAAAATCCAAAAATTGATTGATTTGGTAAAACTTTGTGTTCT---AATTTTAGTAATAAGTACCACAGTACAAATATCCAC
s cb4.chrX              8721152 189 + 21540570 ACTTCTGTAGCagatatccaaaaaattaacaaaatgcaaattataaacaattttatcatttttaga-----tgttt------------ttctttcaaaaattcagataataGAGCTTCAAATAATGTCATTGAATGAATTTATATCAAAGCATTTACT------GTGAA----TGTGCTTTCggactttcaaaaatctgtcccAC----CACGTTTCCCC
i cb4.chrX              I 90 C 0
e caePb3.Scfld02_0      2001076  82 +  4147112 I
e caeJap4.Scaffold18142   30544  30 +   343467 I
e caeSp111.Scaffold630  5733921   7 + 20921866 I
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=-732.000000
s ce10.chrX             3598459 3 + 17718866 AAA-
s cb4.chrX              8721341 3 + 21540570 CAA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5733928 3 + 20921866 -Aga
i caeSp111.Scaffold630  I 7 I 9
e caePb3.Scfld02_0      2001076 82 +  4147112 I
e caeJap4.Scaffold18142   30544 30 +   343467 I
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=-809.000000
s ce10.chrX             3598462 11 + 17718866 TTTCTATACTT
s cb4.chrX              8721344  9 + 21540570 --ACCATGTCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5733940  7 + 20921866 ----tttcttt
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2001158  7 +  4147112 ----tttctct
i caePb3.Scfld02_0      I 82 C 0
e caeJap4.Scaffold18142   30544 30 +   343467 I
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=2461.000000
s ce10.chrX             3598473 8 + 17718866 TTTTTCCA
s cb4.chrX              8721353 8 + 21540570 TCCTAACA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5733947 8 + 20921866 gcttttcG
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2001165 8 +  4147112 tcctttca
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142   30574 8 +   343467 tttttcca
i caeJap4.Scaffold18142 I 30 C 0
e caeRem4.Crem_Contig0   731091 104 -  4500979 I

a score=471266.000000
s ce10.chrX             3598481 585 + 17718866  
s cb4.chrX              8721361 577 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   731195 578 -  4500979  
i caeRem4.Crem_Contig0  I 104 I 1
s caeSp111.Scaffold630  5733956 579 + 20921866  
i caeSp111.Scaffold630  I 1 I 5
s caePb3.Scfld02_0      2001177 577 +  4147112  
i caePb3.Scfld02_0      I 4 I 210
s caeJap4.Scaffold18142   30582 576 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-3845.000000
s ce10.chrX             3599066 15 + 17718866 -----AAAGTTTTTTTTTAT----
s cb4.chrX              8721942 13 + 21540570 -----aaaatttcaagat------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   731774 13 -  4500979 -----GAAACTTTATACT------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5734540 10 + 20921866 -----GAATTCTTAT---------
i caeSp111.Scaffold630  I 5 I 31
s caeJap4.Scaffold18142   31158 22 +   343467 caaaataattttcaattt--atat
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2001754 210 +  4147112 I

a score=-93.000000
s ce10.chrX             3599081 11 + 17718866 AATGTTTGTCA
s cb4.chrX              8721955 10 + 21540570 tttgttTGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   731787 11 -  4500979 AGTATTCGATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142   31180 11 +   343467 attttttttca
i caeJap4.Scaffold18142 C 0 I 19
e caePb3.Scfld02_0      2001754 210 +  4147112 I
e caeSp111.Scaffold630  5734550 31 + 20921866 I

a score=-694.000000
s ce10.chrX             3599092  5 + 17718866 AACTC----------
s caeRem4.Crem_Contig0   731798 15 -  4500979 AATGTTGTTACACCC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2001754 210 +  4147112 I
e caeJap4.Scaffold18142   31191 19 +   343467 I
e cb4.chrX              8721965  0 + 21540570 C
e caeSp111.Scaffold630  5734550 31 + 20921866 I

a score=687.000000
s ce10.chrX             3599097 62 + 17718866 AATAAAGTATTCAATTTTAAAAAAAGT-TTTTTTTTTCAATTCTGAAGTGCTCTTTAAAATTT
s cb4.chrX              8721965 58 + 21540570 -TCGAAGAGTTTATTATCGTAAAACgtaattatttttctattcaaaaa----cttcaagaatT
i cb4.chrX              C 0 I 5
e caePb3.Scfld02_0      2001754 210 +  4147112 I
e caeJap4.Scaffold18142   31191 19 +   343467 I
e caeSp111.Scaffold630  5734550 31 + 20921866 I
e caeRem4.Crem_Contig0   731813  0 -  4500979 C

a score=0.000000
s ce10.chrX             3599159 789 + 17718866  
e caePb3.Scfld02_0      2001754 210 +  4147112 I
e caeJap4.Scaffold18142   31191  19 +   343467 I
e cb4.chrX              8722023   5 + 21540570 I
e caeSp111.Scaffold630  5734550  31 + 20921866 I
e caeRem4.Crem_Contig0   731813   0 -  4500979 C

a score=182.000000
s ce10.chrX             3599948 2 + 17718866 AT
s caePb3.Scfld02_0      2001964 2 +  4147112 at
i caePb3.Scfld02_0      I 210 C 0
e caeJap4.Scaffold18142   31191 19 +   343467 I
e cb4.chrX              8722023 5 + 21540570 I
e caeSp111.Scaffold630  5734550 31 + 20921866 I
e caeRem4.Crem_Contig0   731813 0 -  4500979 C

a score=-768.000000
s ce10.chrX             3599950 12 + 17718866 -------TTTTTATTGCG--A
s caeSp111.Scaffold630  5734581 21 + 20921866 tttttatttcttgatTCTATA
i caeSp111.Scaffold630  I 31 C 0
s caePb3.Scfld02_0      2001966  7 +  4147112 -------tttttg-------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   31191 19 +   343467 I
e cb4.chrX              8722023  5 + 21540570 I
e caeRem4.Crem_Contig0   731813  0 -  4500979 C

a score=2743.000000
s ce10.chrX             3599962 17 + 17718866 TCTTATTCCAACAA-ACA
s cb4.chrX              8722028 18 + 21540570 TTCTGTCCCAAAAATACG
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold630  5734602 17 + 20921866 CTTTGACACAACAA-ACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2001973 17 +  4147112 attggtcCCAATAA-ACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   31191 19 +   343467 I
e caeRem4.Crem_Contig0   731813  0 -  4500979 C

a score=54.000000
s ce10.chrX             3599979 1 + 17718866 A
s cb4.chrX              8722046 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5734619 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2001990 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   31210 1 +   343467 A
i caeJap4.Scaffold18142 I 19 C 0
e caeRem4.Crem_Contig0   731813 0 -  4500979 C

a score=301222.000000
s ce10.chrX             3599980 830 + 17718866  
s cb4.chrX              8722047 843 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   731813 825 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5734620 828 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2001991 801 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   31211 828 +   343467  
i caeJap4.Scaffold18142 C 0 I 93

a score=-7605.000000
s ce10.chrX             3600810 29 + 17718866 GATAAGTAATTTCAACCGAAAAAAATCTT
s cb4.chrX              8722890 24 + 21540570 ttttaacatt---AAC--AAAGAAACCTT
i cb4.chrX              C 0 I 147
s caeRem4.Crem_Contig0   732638  9 -  4500979 GATGGAAAT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5735448 12 + 20921866 gaaaagcaa---------aaa--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2002792 18 +  4147112 gaaaaacaa---------aaaacaact--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   32039 93 +   343467 I

a score=-5291.000000
s ce10.chrX             3600839 69 + 17718866 CCGGGTTGGGAGGCCCTTTTTGGTGAGTTTTTTTTTCATGTAACAAAAACGGGAGACAGAAAGAAATAA
s caeRem4.Crem_Contig0   732647  9 -  4500979 ----------------------TCATGCTTC--------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5735460  8 + 20921866 -----------------------caagtttt--------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2002810  8 +  4147112 -----------------------caaGTTTT--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   32039 93 +   343467 I
e cb4.chrX              8722914 147 + 21540570 I

a score=-6300.000000
s ce10.chrX             3600908 46 + 17718866 ACGGAAATGTATCTAGGAAACAGAATAAAATT--AAATATTTGAATTT
s caeRem4.Crem_Contig0   732656 29 -  4500979 -----------------AATagaaataacaac--aaaaacacaaattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5735468 30 + 20921866 -----------------gaGTTGATTTAAACCT-AAAAACTGCGTTTT
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      2002818 27 +  4147112 -----------------AAgttaactttaa----aaaaataataaatt
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   32132 36 +   343467 ATGGAA-----------GTTTTAACGTAAAGTTGGAAAATGGTATTG-
i caeJap4.Scaffold18142 I 93 C 0
e cb4.chrX              8722914 147 + 21540570 I

a score=-70179.000000
s ce10.chrX             3600954 196 + 17718866 GTATTT-----CATATTTTTCAGCATTTGGAAAAAAGTTTAGACTA---------------------------CCAAATGAACCCTATTTTATTCTAAAAAGAAGCTTTTAAATATATCTCTACAAAAAAAACTAGCAGCTGAGGAGCACTCTGAACAAAA--------------------------TTAAAAGTCGATTTGAAAATATTTCAGTGTATTTTTCGCTACTTCCTAGGCCTGTGAAATTGCTCCA----------
s cb4.chrX              8723061 233 + 21540570 GCTTTT-----AAtatgtttcaaaacttgaaattttgttgttgaaagaaattttatatttcagacAGTCTGTCgtaaattgtttcttttttaatttccaaataaatctttaa----ttttcgaaataatcccaaacaagtggaaaaattcgacaattcaaaattgaaaattttcaaaggaaaatgtctgaaaaatgaactttgaTCTAATTCTGAGTATACCataagaaatatt------------ttgtttaa----------
i cb4.chrX              I 147 I 18
s caeRem4.Crem_Contig0   732685  47 -  4500979 ----------------------------------------------------------------------------------ttctctt--------------------------------------------------------------------------------------------------caaaaaagaagacttgaGCTAA----GAGGATTCCACG-----------------------TCTCCA----------
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5735503  86 + 20921866 -------------------------------------------------------------------------GTA-------TCTCGTATTAAAAGCAAAT------------------------------------------GAATTCCACTACTTGAAgac-----------------------taaaaaagaagaattggcAGACGATGTAAGCTCTCGTG-----------------------ACTCCA----------
i caeSp111.Scaffold630  I 5 I 3
s caePb3.Scfld02_0      2002850  85 +  4147112 -------------------------------------------------------------------------CTAA-----GCCTCGCACGGAGTCTCA---------------------------------------------AATCCTACGACTTAAAATG-----------------------TAAAATGAAAGGCAAAAAAGGAGATGTAAGCTCTCGTT-----------------------GCTCCA----------
i caePb3.Scfld02_0      I 5 I 47
s caeJap4.Scaffold18142   32168 137 +   343467 GTTCTCAGCTGAAAATATGTACGAACTTGGGAT----------------------------------------AAAAAAGGTTAACCTTACACCATAAAA-----------------------------------------GACAATTTGcaagaagcaaaaaa-----------------------aaaaaaaaaaaattataattaatttaaacatttttgtt-----------------------tctcataaAACCACTA
i caeJap4.Scaffold18142 C 0 C 0

a score=-22599.000000
s ce10.chrX             3601150 88 + 17718866 AAGGTGAATTTTTGAAGTTTCAGATTTTTTTTGGAAAAAAAAATTTAACATATTG-------------------------------TGAACGAACATTTTTAGTC----AACAATAATTATTT
s cb4.chrX              8723312 97 + 21540570 AGAGTcgcttttgaaaatcgctgttttgcactgaaaacgagA-----------TGTTTTGTG--CCAAAACTTATATAACTCGGCTGGAACTGGCGAGCGGATTCTAATG-------------
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   732740 34 -  4500979 ------------------------------CTGGAAacagaa-----------tg-------------------------------gaaaaaaacatgGGAATCC----G-------------
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5735592 43 + 20921866 --------TCTCAAACGTATC---------TAGGAAacaaaa-----------tg-------------------------------ggaaa----atgtgTATTC----A-------------
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold18142   32305 72 +   343467 -GAGCCTAATTTGA-------TTCTTTATTctagaaaattga-----------agttttttaACCCAGAACtttt-----------tggacaattaatttta---------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2002935 47 +  4147112 I

a score=58961.000000
s ce10.chrX             3601238 822 + 17718866  
s cb4.chrX              8723409 890 + 21540570  
i cb4.chrX              C 0 I 528
s caeRem4.Crem_Contig0   732774 698 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold630  5735635 683 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2002982 710 +  4147112  
i caePb3.Scfld02_0      I 47 C 0
s caeJap4.Scaffold18142   32377 941 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-28001.000000
s ce10.chrX             3602060 108 + 17718866 TATTTTTGTACTCT--------AGTAA-TAGTGAAAACGTCAATTAAGAGGGAGAACATTTTC---TATAG--------ATCAG-------AATCGAAAAAAAAAACAGAAAAAAACCTAAGATTAGCCAAGACC
s caeRem4.Crem_Contig0   733482 118 -  4500979 --TTTTGTTGGTCAACAA----TGTAA-TAAAC----TAGAAATAATCAACTAAAGGATCGG----TAGAA--CACAGGTACTGCACATTTGTAATAGTTACAAAGTCTCAGGaaaaatgatatcaaaaatgcTG
i caeRem4.Crem_Contig0  I 10 I 34
s caeSp111.Scaffold630  5736318 105 + 20921866 -GTTTGTTGAGTCAATATAGAGTGCAA-CACGTGTTGTGTCAATCTTCTG----------------TAAAA--------TTAAGCAGG---AACTCATATACAAGATaagggagaaaaaaa-attaatcaacATC
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2003692 108 +  4147112 -GTTT-----------------TTCAA-TGGGTCATGTGTCAGTTATTAGTTAAGAAATTTGCTCTTTAAA--------TTATGCGCGCTTGAACGataaaggaagtagaaaagagaaaaataataataaagaca
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   33318 109 +   343467 -attttt---------------tgtaactAAGGGACCGCTTAATGCTTAAACCAAAGAAAA-----TAGGAGCAACATGTTCAGGGAATTTTTGCCACGGAATAGGCAGC-TCTAACTGACTATTAGCCTA----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8724299 528 + 21540570 I

a score=327805.000000
s ce10.chrX             3602168  961 + 17718866  
s cb4.chrX              8724827 1063 + 21540570  
i cb4.chrX              I 528 I 438
s caeRem4.Crem_Contig0   733634  880 -  4500979  
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold630  5736429  886 + 20921866  
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2003806 1016 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142   33427 1035 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-8739.000000
s ce10.chrX             3603129 18 + 17718866 AAGTAGTTCCAAT----TTT--TA
s caeRem4.Crem_Contig0   734514 14 -  4500979 ----AGTCTTGAT----TTTTA--
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold630  5737315  5 + 20921866 -----------AT----TTG----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2004822  9 +  4147112 -----------atgaagttg----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   34462  1 +   343467 -----------A------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8725890 438 + 21540570 I

a score=-3264.000000
s ce10.chrX             3603147 40 + 17718866 ---CAGAATCAGTATCAAATCTCACTATTATTTCAAAAACTCA
s caeSp111.Scaffold630  5737320 21 + 20921866 ---ATCAATAATTATCAATTTCCA-------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2004831 18 +  4147112 ---agaaatagttTGAAACTT----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   34463 24 +   343467 TCACTGgattatttaaaaatctaa-------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8725890 438 + 21540570 I
e caeRem4.Crem_Contig0   734528 51 -  4500979 I

a score=60.000000
s ce10.chrX             3603187 2 + 17718866 TC
s caeJap4.Scaffold18142   34487 2 +   343467 tt
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2004849 0 +  4147112 C
e cb4.chrX              8725890 438 + 21540570 I
e caeSp111.Scaffold630  5737341 0 + 20921866 C
e caeRem4.Crem_Contig0   734528 51 -  4500979 I

a score=230109.000000
s ce10.chrX             3603189 226 + 17718866 ---TTCAGGTCTACGGCCACCACTCTGGAATTCGTGATATTGGAACTAAGCGTTGGCTGGAGGGAAAGCTCAATGCCTATAACACCTCTCTTTTCACCCGTCCCGACTACCAAAAACGTGTTGAGAGACCACTAGCATCAGCAAGAAGCTACGTCCGATATATGCCAGTTGATGACGCCTTGGATATGTACAAGAAGAGATGTATGACAGTTGGAACGTTGTCGAAGGT
s cb4.chrX              8726328 226 + 21540570 ---ttcaggtctaCTCGCGTCACTCTGGAATCCGTGACATTGGAACCAAACGCTGGCTCGAGGGAAAGCTCAATGCCTACAACACCTCTTTGTTCACCCGCCCGGACTACCAAAAACGTGTCGAGAAGCCGATCGCCTCGACCAGAAGCTATGTGAGATACATGCCAGTTGATGATGCTTTGGATATGTACAAGAAGAGATGTATGACCGTGGGAACTCTTTCGAAGGT
i cb4.chrX              I 438 I 2
s caeRem4.Crem_Contig0   734579 226 -  4500979 ---TGTAGGTCTACTCTAGACACTCTGGAATCCGTGACATCGGAACTAAGCGTTGGCTCGAGGGAAAGTTGAACGCCTACAACACATCTCTTTTCACCCGCCCGGACTACCAAAAGCGTGTTGAGAAGCCAATTGCTTCCTCAAGAAGCTACGTCAGATACATGCCGGTTGATGATGCTTTGGATATGTACAAGAAGAGATGCATGACCGTCGGAACTTTGTCTAAGGT
i caeRem4.Crem_Contig0  I 51 I 88
s caeSp111.Scaffold630  5737341 226 + 20921866 ---TTCAGGTTTATGGAACTCACTCTGGAATCCGTGATATTGGAACTAAGCGTTGGCTCGAGGGAAAACTCAATGCTTACAATACATCTCTTTTCACTCGCCCGGACTATCAAAAACGGGTTGAAAGACCAGTTGCTTTCTCCAGAAGCTATGTTCGTTACATGCCGGTGGATGATGCTTTGGATATGTACAAGAAGAGATGCATGACAGTCGGAACTCTTTCCAAGGT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2004849 223 +  4147112 ------AGGTTTACGGAACTCACTCTGGCATTCGCGACATTGGAACGAAGCGTTGGCTCGAAGGAAAATTGAATGCCTACAACACCTCATTGTTCACTCGCCCGGACTACCAAAAACGTGTTGAGAAGCCAGTTGCTTCTACCAGAAGCTATGTCAGATACATGCCAGTCGATGATGCTTTGGATATGTACAAGAAGAGATGTATGACTGTTGGAACTTTGTCTAAGGT
i caePb3.Scfld02_0      C 0 I 62
s caeJap4.Scaffold18142   34489 229 +   343467 tttcaCAGGTCTACTCAAGGCACACCGGACTTCGTGACATTGGAACCAAGCGCTGGCTCGAGGGAAAACTCAACGCCTACAACACATCTCTCTTCACCCGTCCGGACTACCAAAAGCGCGTCGAGAAACCGTTGGCTTCCACCAGAAGCTATGTAAGATATATGCCAGTTGATGATGCTTTGGATATGTACAAAAAGAGATGCATGACAGTTGGAACCCTTTCGAAggt
i caeJap4.Scaffold18142 C 0 C 0

a score=-2289.000000
s ce10.chrX             3603415 6 + 17718866 AACGCA-
s cb4.chrX              8726556 6 + 21540570 ATTACA-
i cb4.chrX              I 2 I 34
s caeSp111.Scaffold630  5737568 1 + 20921866 A------
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold18142   34718 2 +   343467 -----ag
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2005072 62 +  4147112 I
e caeRem4.Crem_Contig0   734805 88 -  4500979 I

a score=637.000000
s ce10.chrX             3603421 7 + 17718866 ATTTTTT
s caeJap4.Scaffold18142   34720 7 +   343467 atttttt
i caeJap4.Scaffold18142 C 0 I 39
e caePb3.Scfld02_0      2005072 62 +  4147112 I
e cb4.chrX              8726562 34 + 21540570 I
e caeSp111.Scaffold630  5737569 0 + 20921866 C
e caeRem4.Crem_Contig0   734805 88 -  4500979 I

a score=-5598.000000
s ce10.chrX             3603428 459 + 17718866 AGACTACTGTTGTATTTTCTCCATTAGTCTTGCATTTTCGAGTTTATTAAATATCTTAGCAGTTTCTTGTAGGCACCGCATAAATTAAGAAATCCATAGAGTCATTGAATTTTGAAGAAAAATATAATTCGGTTTTTTATCCTCAGTCAGTTGAAAATGTATTTTGCAGTTTCTAGAAAATTAAAAATAAAGCTTGATGGCAATATTCATTCAATAGGAGTATTGAAAAACATGCTTTAAGTGAATTACAAATTAATATTTCTTTTTCATTAATTTGATTAGTTTTGGCGATACATATTTGTCTTTTGTATTATTCAAAAATTGATTACTGGCTGAACTAAAAATATGTATTATCCAGTTTTCTAGAGTTTTGTATATACTCATTTATTTCTTACTCACACTTGAGCCTAGATATAATCTTTTAAAACTCAATTTAAAAAAAAACCAAAATTCGGGTTT
s caeSp111.Scaffold630  5737569 199 + 20921866 -------------GTTTGCTac----------catttgaaattaaattgatGATGTTTTTAGTTTATTAGACGAATAACACCAA----------------------GAATATTG--------tctatttc------------------------------atttcacagtttgtgaaaa--------------------------------------------------------------------------------------------aagttgttcagTTTTATCGCTA--------TGTTTTATATACCTGCAAAAT---------ACAGAAATTAGAGCATCTA-----------TCCCGAGTTT------------------------------------CCGGTTATAATGTGTGAAGTCT-----------AATACCAAA----------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2005072  62 +  4147112 I
e caeJap4.Scaffold18142   34727  39 +   343467 I
e cb4.chrX              8726562  34 + 21540570 I
e caeRem4.Crem_Contig0   734805  88 -  4500979 I

a score=0.000000
s ce10.chrX             3603887 55 + 17718866 ATTAAAAGCCTCACAACTGGATACTCACTCTGCACAAGTATTATTTTTTAATAAA
e caePb3.Scfld02_0      2005072 62 +  4147112 I
e caeJap4.Scaffold18142   34727 39 +   343467 I
e cb4.chrX              8726562 34 + 21540570 I
e caeSp111.Scaffold630  5737768  0 + 20921866 C
e caeRem4.Crem_Contig0   734805 88 -  4500979 I

a score=562.000000
s ce10.chrX             3603942 10 + 17718866 ATGAAGTGCA
s caeJap4.Scaffold18142   34766 10 +   343467 ATGAAACACA
i caeJap4.Scaffold18142 I 39 C 0
e caePb3.Scfld02_0      2005072 62 +  4147112 I
e cb4.chrX              8726562 34 + 21540570 I
e caeSp111.Scaffold630  5737768  0 + 20921866 C
e caeRem4.Crem_Contig0   734805 88 -  4500979 I

a score=-14.000000
s ce10.chrX             3603952 5 + 17718866 ATCTA
s caeSp111.Scaffold630  5737768 2 + 20921866 ---TA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2005134 5 +  4147112 atatt
i caePb3.Scfld02_0      I 62 C 0
s caeJap4.Scaffold18142   34776 4 +   343467 -TCTA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8726562 34 + 21540570 I
e caeRem4.Crem_Contig0   734805 88 -  4500979 I

a score=351363.000000
s ce10.chrX             3603957  885 + 17718866  
s cb4.chrX              8726596  905 + 21540570  
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   734893  901 -  4500979  
i caeRem4.Crem_Contig0  I 88 C 0
s caeSp111.Scaffold630  5737770  934 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2005139  850 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   34780 1010 +   343467  
i caeJap4.Scaffold18142 C 0 I 32

a score=-4135.000000
s ce10.chrX             3604842 29 + 17718866 GTTTCGAAGAAATTACTACGTCATAAATC
s cb4.chrX              8727501 19 + 21540570 ttatT-------TCTCT---TAGAAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   735794 22 -  4500979 GTTTT-------TCACTGAATGAGGATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5738704 18 + 20921866 atTTC-------GAATTTA-TAAGGA---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2005989  0 +  4147112 C
e caeJap4.Scaffold18142   35790 32 +   343467 I

a score=242643.000000
s ce10.chrX             3604871 374 + 17718866 TTACCAGGTGGGCGCTCAGGAAAAACGTTCGTCGGAGCTTGGAATCCTTGGTATGTCCCTTGCACCAAGTAGTATGTCGGTGGAGCAGCATAGTACGTAGTGCCTGATTGCTGTTGCATATTTCCA---CCATATGCTGGTGGAGCAGCAAATGGACGAGCTCTAGATGCTGA-----------------AACAGAACCAAAACAT--TGATG--------GGAACTAT---------TCAAGACA-------------ATCGTACCCATGTCAGCAGCGCGAAGAAGTGCCTCTCCAAACTCGATGCATCCTCCTTTCGGGAAAGACAAACGCCATTCCGGACATCCATCAAAGTTGCCTCCAGGCATTGGTTGAACCCATCCCTGAAAAATTAAAAAT--GTGACTGCAAG-------------TCATTTAAGAT--------------------TGAA
s cb4.chrX              8727520 373 + 21540570 CTACCTGGTGGACGCTCTGGGAAGACATTTGTCGGAGCTTGGAATCCTTGATACGTTCCTTGCACCAAGTAGTAGGTTGGTGGAGCTGCATAGTACGTTGTGGCTGACGCCTGCTGCATATGAGCCGGAGCGTAGGCAGGTGGAGCAGCGAACGGGCGAGCACGAGATGCTGA-----------------ATAGTTCCT-----AT--TATGA----------GATTATTATGAGATTTCGC-----------------AACTCACCCATATCGGCGGCACGAAGAAGAGCCTCTCCGAATTCGATACATCCTCCTTTCGGGAACGACAAACGCCACTCAGGACATCCTTCAAAGTTTCCTCCTGGCATCGGTGTAACCCATCCCTGAAAAGACGAA-----TTGGTCGTGGT-------------CACACTACAATG-------------------TGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   735816 390 -  4500979 GTACCTGGTGGACGCTCTGGGAAGGTGTGAGTCGGTGCTTGAAATCCTTGGTAGCTTCCTTGGACCAAGTAGTACGTCGGAGGAGCTGCATAGTAAGTGGTGGCTGACTGTTGTTGCATATTAGCAGGAGCATATGCTGGAGGAGCAGCAAATGGACGGGCGCGTGATGCTGG-----------------AAATTAAATGAATAAT--TGAGG----------AACtat-----gatttttc-----------------aactaaCCCATGTCAGCAGCACGAAGAAGTGCTTCTCCGAACTCGATGCATCCTCCTTTTGGGAACGACAGGCGCCACTCCGGACATCCTTCGAAGTTTCCTCCGGGCATTGGTGTAACCCATCcctgaaacgaagaaaaacgtTTGTTGCGGT-------------CATATTACAATGATGAGAT-------GCGAATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5738722 383 + 20921866 ATACCTGGTGGACGCTCTGGGAACACATTGGTAGGAGCCTGGAATCCTTGATAACTTCCTTGAACCAAATAATAAGTTGGTGGAGCAGCATAATATGTTGTTGCCGATTGTTGTTGCATATTTGCAGGTGCATAAGCAGGTGGAGCAGCAAATGGACGAGCACGGGATGCTGA-----------------AAACCCGA------AT--TGTTG-------------CAT-----GTGTTCATAATGGCATATGAATCTGAACTCACCCATATCGGCAGCTCGAAGGAGAGCTTCTCCAAACTCAATGCATCCTCCTTTTGGGAATGAAAGACGCCATTCCGGACATCCTTCGAAATTTCCTCCTGGCATTGGGGTGACCCATccctgaaaaata--------gtttttgcgGT-------------GATATTACaatgttgaaaa-------ga-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2005989 394 +  4147112 -------GTGGACGCTCTGGGAACACATTAGTCGGTGCCTGGAACCCTTGATAGCTTCCTTGAACCAAGTAGTAAGTTGGAGGAGCAGCATAATAAGTGGTGGATGATTGTTGTTGCATGTTTCCAGCTGCATAAGCAGGTGGAGCGGCAAACGGACGAGCACGTGATGCTGA-----------------AAGCAATA------ACAATGTGATTAACGAAAAAACCAT-----TATTTCGTAAACAAAACCGCATCAAAACTCACCCATATCGGCGGCACGGAGAAGAGCTTCTCCAAACTCAATGCATCCTCCCTTCGGGAACGATAAACGCCACTCTGGACATCCTTCGAAGTTTCCTCCTGGCATTGGCGTGACCCATCCCTGAAAAAT---------GTCGTTGCGGT-------------TGTGTTACAATGTAGAAAA-------GG---CGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   35822 433 +   343467 TCACCTGGTGGGCGCTCCGGAAACACGTTGGTTGGAGCCTGGAATCCTTGGTATGTTCCTTGCACCAAGTAGTAGTTCTGCGGAGCAGCGTAGTAAGTGGCCGTTGATTGTTGTGGCATGTTTCCGGCACCATATGCTGGTGGAGCAGCAAACGGACGAGCCCGAGAGGctaaattaatgtttttttttgaaaaaaaattaatcag--cgtgt--------aaaattaa-----aaatttat-------------ttaatacTCACCCATATCTGCAGCTCTAAGTAGAGATTCTCCAAATTCGATGCAACCGCCTTTTGGGAAAGAAAGACGCCATTCCGGATTTCCCTCAAAGTTGCCTCCTGGAAGTGGTTCAACCCAACCCTgtcaaataaaattttatgttttgtgttgcacggcgtgttagagactacgtttcagaaaacttttttgagatcaaa
i caeJap4.Scaffold18142 I 32 I 166

a score=72922.000000
s ce10.chrX             3605245 192 + 17718866 AAAAAA---ACCTTGAGATAGTTTGGGGTGAGAAGTGGCTGTTCAAGTTTCACATCTCGCACTGAATTGAATGGCATCGCGAAGGATTTGAACTCATCTTTCTTGCTCTCGTTCATGAAAATTATCTGAAAAAATAAAGTTGAAATATTTGAA--------------------------------------------------------ATTTAGGATCAAACGTT--TTGGTTTTCAGCTAAAAT------------------------------------------------------------------------GAAAAAA
s cb4.chrX              8727893 294 + 21540570 AGTGTACCAACCTTGAGGTAGTTTGGAGTGAGAAGCGGCTGTTCGAGTTTCACATCGCGGACCGAGTGGAATGGCATTGCGAAAGATTTGAACTCGTCCTTCTTATTGTCGTTCATGaagatgatctgaaaaatcaattttctagaagccACGGCACATAT-------------------------------CTCGGGCGTCGCAGGCAACTTCTGGTCGAAGGTTTGTCAGATTTCGAATAAGCTAGAGCCAGTCACAGCCCAACAAACCTATGACAAGGTTCGGGCCACATattattccaattttattcATCATACCAAAATC
i cb4.chrX              C 0 I 96
s caeRem4.Crem_Contig0   736206 260 -  4500979 AATAAACCAACCTTCAGGTAGTTTGGAGTGAGAAGCGGCTGTTCGAGTTTCACATCTCTGACGGAGTGAAAGGGCATTGCGAATGATTTGAGCTCATCCTTCTTGCTGTCATTCATGAAGATGATCT---AaagcaatttttttgtgtgaagAACATTTATTTGGAGGAGATCTATTTCTTTTATTAGAAACCTCTTAAAT--------ATTCATAATCgc-------tcagtttttcaaaaagct--------------------------------------------catatt-tcataattt--ctcaatattttacAAAT
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold630  5739105 187 + 20921866 ---aaaccaacCTTGAGGTAGTTTGGAGTGAGAAGCGGCTGTTCAAGTTTGACATCTCTTACTGAGTGGAATGGCATTGCAAAAGATTTGAACTCGTCTTTTTTGCTCTCATTCATGAAGATAATCTGAAATG----------------------------------------------------------------------------ATTAGTGAGTGAAA-----GGGGACTTCAGATAATTG----------------------------------------------------TCCGTTTT--TGTGTCCTAagacaatt
i caeSp111.Scaffold630  C 0 I 37
s caePb3.Scfld02_0      2006383 180 +  4147112 AATAAACCGACCTTGAGATAGTTTGGAGTGAGAAGCGGCTGTTCAAGTTTAACATCTCTCACAGAGTGGAATGGCATTGCAAATGACTTGAACTCATCCTTCTTGCTGTCGTTCATGAAGATGATCTGAAGTATAAATTT---------------------------------------------------------------------GATAGTGAGTAAAA-----------CACAATGAATCA-----------------------------------------------------------------GTTCTTCGACAATG
i caePb3.Scfld02_0      C 0 I 753
s caeJap4.Scaffold18142   36421 154 +   343467 ---aaagaTACCTTAAGATAGTTGGGGGTGAGAAGCGGCTGCTCAAGTTTCACATCTCTGACCGAGTGGAATGGCATCGCGAACGATTTGAACTCGTCTTTCTTGCTATCATTCATGAAAATGATCTAAATTGTTGGAATTGTTAAT--------------------------------------------------------------TCTTTTTATT----------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold18142 I 166 C 0

a score=-12169.000000
s ce10.chrX             3605437 28 + 17718866 AAAACCTA----TCCAGAA---------ATGAAAATTTGC------------A
s cb4.chrX              8728283 34 + 21540570 AACGCCGATATTACCACAA-------TTCGAAGATTTGGC------------G
i cb4.chrX              I 96 I 18
s caeRem4.Crem_Contig0   736511 30 -  4500979 AAATCTTGACCTACTAA-----------CGAAAAATCAGC------------A
i caeRem4.Crem_Contig0  I 45 I 13
s caeSp111.Scaffold630  5739329 48 + 20921866 -----ttaaatttctcaAACGTTATTTCATAATAGTGAGCTTTGTGGTTTTTA
i caeSp111.Scaffold630  I 37 I 22
s caeJap4.Scaffold18142   36575  8 +   343467 --------------------------------ATGTAAGC-------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2006563 753 +  4147112 I

a score=82595.000000
s ce10.chrX             3605465 148 + 17718866 ACTCAAAAACT----------------------TTA---------------------------------AAACTCACTCTGTGTGAAGTGAGATAGAGGGCTCCCGACTTGGTGGACTTGAACGCAGGAACATTGTACTTCTCGAACTTCAGCTTTACATTTGTTGTGTAGAGAAGAATCCTGAAATTATAAAAACT-----------TATTTC-
s cb4.chrX              8728335 203 + 21540570 ATTCACAATATGAACAACGCGCATCTTGCGAAATCAGTATTTTACCACCGCCTAAtctgcaattttgaaaaactcactctATGCGACGTGAGGTAGAGAGCACCAGACTTTGTCGATTTGAACGCTGGAACGTTGTACTTCTCAAACTTCAGCTTTATATTTGTCGTGTAGAGGAGAATCCTAGAATCGAATTATTT-----------TCTCTC-
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   736554 174 -  4500979 AATcttaattt----------------------ttagatttttgcaACGGC------------------AAACTGACTCTGTGTGAAGTAAGATAGAGAGCTCCCGATTTCGTTGACTTGAACGCGGGAACATTGTACTTCTCGAACTTCAGTTTGACGTTTGTGGTGTAGAGGAGAATCCTTAAAGAAAACTAATTCATTCACGGGCTATCTT-
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold630  5739399 183 + 20921866 aattctaattt------catatgtatt------tcataatttt-------ctgaatcgaTTTTGTTGCGAAACATACTCTGTGTGAAGTAAGATAAAGAGCTCCTGATTTTGTCGATTTGAATGCCGGTACATTGTATTTCTCGAACTTCAGCTTGACATTCGTCGTGTACAggagaattct-gaattgaataaata-----------tttctt-
i caeSp111.Scaffold630  I 22 C 0
s caePb3.Scfld02_0      2007316 153 +  4147112 AAGCCTGATTT------CATA------------ACAAAAT-------------------------------ACTTACTCTGTGCGATGTAAGATAGAGAGCTCCAGATTTAGTTGATTTGAACGCTGGGACGTTGTATTTCTCGAACTTCAGCTTGACATTGGTTGTGTAGAGAAGGATTCT-GAAAAGTAACATTA-----------CATTTT-
i caePb3.Scfld02_0      I 753 C 0
s caeJap4.Scaffold18142   36583 130 +   343467 ----------------------------------------------------------------------AACTTACTCTGTGAGAAGTGAGATACAGAGCTCCCGACTTCGTCGATTTGAAGAGAGGATGATTGTACTTTTCAAACTTCAGTTTAACATTTGTAGTGTAGAGGAGAATCCTGCAATAGAAAT---------------TTTCTTC
i caeJap4.Scaffold18142 C 0 I 2181

a score=-9947.000000
s ce10.chrX             3605613 38 + 17718866 ATAATTTGAAAAGAATCAGTTTTGAGAAAGAATTTAAA
s cb4.chrX              8728538 15 + 21540570 AACTTTCAAATA-----------------------CAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   736728  8 -  4500979 ACTtttga------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5739582 17 + 20921866 cagttttaattca---------------------ttga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2007469 15 +  4147112 CACATCAAGATC-----------------------CAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   36713 2181 +   343467 I

a score=102560.000000
s ce10.chrX             3605651 409 + 17718866  
s cb4.chrX              8728553 380 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   736736 358 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5739599 404 + 20921866  
i caeSp111.Scaffold630  C 0 I 266
s caePb3.Scfld02_0      2007484 410 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   38894 511 +   343467  
i caeJap4.Scaffold18142 I 2181 C 0

a score=-37383.000000
s ce10.chrX             3606060 164 + 17718866 ---GGGCAGAATTGCCGGGAAATAAAGGTAATTAGGCAACGAGCTACTTTTGGAAAATTTTGAGTCGATTTTGGTCGTGT--ATTTAAACATTTCTGGA------------------AAAAAAACAAGT---AGTTGTATTAATTTGTTGAACAATTTGTGGTGA-AAGTTAA---------------------AATAAATAAATAAGAGAA
s cb4.chrX              8728934 100 + 21540570 -------AGAG-TATCGGGTAGCGATAATAATCAGGAAT-----------TGGAGAATTG----------------GTTT--ATGTGA----Ttcaaga------------------aaaacgagaaaaaagttttgtgctTA-----------------TATGACTCGTCAT------------------------------ATA------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   737095  66 -  4500979 ---------------------GTGGCGATAATCATGAATA----------TCGGGAATT-----------------GTTC--ATATAA----TTC-------------------------------------TTTCGGTTCTA---------------GGTATGA-TTGTTAT---------------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2007896  98 +  4147112 ---TTCAAGAGTTTTTGGTTATCGATAAT--TGATGGAA-----------TGCAGGTTTTC-------------CCGTTTCAATTTGC----TTCTCGT------------------CATATAGTA------CATCAtattaa-----------------aaaga-aaattac---------------------------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   39405 160 +   343467 GCGTAGAAGAATTAGAGGTGTGCA-----TATCAGGTAAAAT--------TGAAATACTTT---------------GTTG--ATTCAT----TTCAAGTTTTCCGCTTAAAATattgaagaaagaaagaaaaactcttattga-----------------attga-taatgaTTAAATATATACTTATGATTCAAacaaatagagaaaaaaa
i caeJap4.Scaffold18142 C 0 I 82
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-7765.000000
s ce10.chrX             3606224 54 + 17718866 CATTTATTATGTTAATTTGAAAGACTCTTAAAAATTTGGTGAATTCATTTGAAA
s cb4.chrX              8729034 43 + 21540570 -GTGCACTGTCTTacgtt------ttctggaaaaaatc----attCATTGCAAA
i cb4.chrX              C 0 I 73
s caeRem4.Crem_Contig0   737161 13 -  4500979 ----CAATGT------------------------------------GTTGTAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2007994 33 +  4147112 ----cCTTGT-------T------TGATCGGAAATTGg----cttcattcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   39565 82 +   343467 I
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-4394.000000
s ce10.chrX             3606278 96 + 17718866 CTTTTCTG-GTTTTTAAAGTAGATGTACTCCAAAGTATTCAAATGTTTCTTTTTTGTTTCTGTATAGTTCAACACATTATTATCCGGCCTAAGCTCC
s caeRem4.Crem_Contig0   737174 34 -  4500979 GTTTTGAG-GTTTTCAA--------CGTCATATAGT----------------------------------------CCATCAC--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2008027 55 +  4147112 ---ttgagaatttttaaaatagaTGCAGAAGAtagttgtgaaaaa-------------------------aatgtactatttc--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   39565 82 +   343467 I
e cb4.chrX              8729077 73 + 21540570 I
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-17480.000000
s ce10.chrX             3606374 147 + 17718866 AAAAAGTTCGAATGTTATGTTCACAATTTTAATTCACTTTAAAATGAGTATCATCATTTGCTTTGAATTTTAAGGAACTTTTGAAAGTGATAGTATCTATCAATCTAGGCTTTCTCTGTACACTTTGAAAA-TTAAAATTTCCTGAAA
s cb4.chrX              8729150  48 + 21540570 -aacaagtcgGA--------------------ATGGCATGtaaa--------------tatttt----tcga------------------------------------------------tattttgaaca-agaa------------
i cb4.chrX              I 73 C 0
s caeRem4.Crem_Contig0   737208  81 -  4500979 -TACACTTTGAATATTACCTTc--------atttgacagaaaaaagagaaat-----ctacTCTG---TTGAAGAAA-----------------------------------------TGCATTTTGAATATAGAAAAT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2008082  56 +  4147112 --------agaa------------------aaatagagtgaaaaaggaaactg----TTGCTACA---TGTAAGTAA-------------------------------------------AAACTCGAGAA-A---------------
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold18142   39565  82 +   343467 I
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-4263.000000
s ce10.chrX             3606521 62 + 17718866 TTCGTTTTATACACTAGGTAATCATATTTGTAAAACTTGACACTTGTAATAGCGTTCCTCTT
s cb4.chrX              8729198 21 + 21540570 -----tcaaaacat----------------------------tttgcaaccaca--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   737289 45 -  4500979 GTCAGTAAGAGTATTA---------ATTTGGAGAG---GAAATTTCTGACTACA-----CAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2008138 29 +  4147112 I
e caeJap4.Scaffold18142   39565 82 +   343467 I
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-11003.000000
s ce10.chrX             3606583 104 + 17718866 ----AACTGATATGTCGAAATTTCTAGAATTTCCTATAATATTATTTGTATTTTTGATTTAAATATCAATGAACAATATTATTCTGCCAAAAATTATATTAGTTCCT----------------------T
s cb4.chrX              8729219  35 + 21540570 ----------------aaaatt-------------------------------------------ctagaaaaaaata-----------aaatgattgtttatc-------------------------g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   737334  82 -  4500979 ----AGGGAATGAGTTGAAAtt---------------------------------------aagaataaaagaaaatagcATTC-----AAATTAAtgtttgttttcaaacaaattttaaacGTGAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2008167  54 +  4147112 aaataatgtgtGAGAAGAAACG-------------------------------------TGAATGCAGAAAACAATTA-----------AAACTTTTGTTG----------------------------G
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold18142   39565  82 +   343467 I
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=-2186.000000
s ce10.chrX             3606687 14 + 17718866 AGCGAAAAG--AAATG--
s cb4.chrX              8729254 14 + 21540570 aatcaaaaa--agatg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   737416 16 -  4500979 AACCAGAAATCAAATG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2008221 15 +  4147112 GACTGGAGAATaatt---
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18142   39647 14 +   343467 ----agaaaaaaaacatt
i caeJap4.Scaffold18142 I 82 C 0
e caeSp111.Scaffold630  5740003 266 + 20921866 I

a score=99787.000000
s ce10.chrX             3606701 271 + 17718866 AAGCTGAAAAACAAA-AAAAACGATTGATAGGGAATG-----TTTATCGAGTCGCGTTGGA------------TAAAAATGTTAAGTCGAACAATAAATACAAAATGAGTGGATCGGAGATTAAATTGAAACCATTGA-----------ATCAGAAAACACaaataataatactaataataataaattgttttttaataCAACACTTTATCAGCAAACACTGGAGCTTGTTCGACTTTTTGTCCCTTGTTGTGTCGGAGGATGGCAACTAGTGGGTGGACAGTTTCTTGCAAATCCTGAA
s cb4.chrX              8729268 229 + 21540570 -------gagaataataaa-------aaGATGGATAT------TT----------------------------TGAGGGTGATAAGCCGAACAATAAATACAAACTGAGTG-AGTGAAGATTAACTGAAGACCgttaa-----------g--aaatttttttactga-------gaaaatatt--tattctcTTTAATACAAAACTTTGTCGGCGAACACTGGAGCCTGTTCCACTTTCTGTCCCTTGTTGTGTCGGAGAATGGCAACGAGTGGGTGGACGGTTTCTTGCAAATCCTGAa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   737432 252 -  4500979 -------GAACTTGA-AAC-------AAGAAGTGTAT------TTATC-AATTGGttagaagaattgaagaaattggaatGATAAGAGGGAcaataaatacaaaataagTGAAATGAGGATTAAATGAAGACCGTTGG-----------ATCAGATTTCTGTG-TGA-------ATGAATA-----ACATGTTTTAATACAAAACTTTGTCGGCGAACACTGGTGCTTGTTCGACTTTTTGTCCCTTATTGTGTCGGAGAATGGCAACGAGTGGATGGACGGTCTCTTGcaaatcctg--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5740269 257 + 20921866 aaacttcgaagcaaa-aaagttgattgaGACGGGAAGGAATATTTatc-aatggaaaagaa------------attgaatgatgaGCCGAACAATAAAtacaaa----atggaagagagatTAATTGAGCGTAATTTTAGAATAAAGTAATCAAAAgtttg-------------------------attcttttcaataCAAAACTTTGTCGGCAAACACTGGTGCCTGTTCCACTCTTTGTCCCTTGTTATGTCTGAGAATGGCGACCAATGGGTGAACAGTTTCTTGTaaatcctgaa
i caeSp111.Scaffold630  I 266 I 30
s caePb3.Scfld02_0      2008243 215 +  4147112 aaaatggGAGGATAG-AAAGCTG---GAGAGGGAGAG---------------------------------------------TAAGCCGGACAATAAATACACAATATATGGATAGAAgattaaacaaaaacaattgt-----------atTAGAAGTCAC-------------------------ATGGTGTCTAGTACAAAACTTTGTCGGCGAACACTGGTGcttgttcaactttttgtcCCTTGTTATGTCTGAGAATGGCGACAAGTGGGTGGACGGTTTCTTGTAAGtcctgaa
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18142   39661 214 +   343467 -aggttacaaaataa-aga-------gatggaaaaaG------TCATC-CATGAGCGCG--------------GTGAAGTGATTAGCCAAACAATAAATACAAATTAACTGAAATGGGGAACAACTGGATGC--TTAA------------------------------------------------------TCTAATACAAAACCTTATTAGCAAGCGATGGTGCCGTTTCAACTTTCTGTCCCTTGTTGTGTCGAAGAATGGCGACCAATGGGTGTACTGTTTCTTGCAGATCCTGAA
i caeJap4.Scaffold18142 C 0 C 0

a score=-1348.000000
s ce10.chrX             3606972 3 + 17718866 GTG-----
s cb4.chrX              8729497 3 + 21540570 ata-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2008458 3 +  4147112 ata-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   39875 6 +   343467 --AACCGG
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5740526 30 + 20921866 I
e caeRem4.Crem_Contig0   737684 0 -  4500979 C

a score=546.000000
s ce10.chrX             3606975 1 + 17718866 A
s caeRem4.Crem_Contig0   737684 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2008461 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18142   39881 1 +   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8729500 0 + 21540570 C
e caeSp111.Scaffold630  5740526 30 + 20921866 I

a score=488.000000
s ce10.chrX             3606976 32 + 17718866 AAGATTT------AATAAGGTAGTTTCAGAAGCATAGA
s caeRem4.Crem_Contig0   737685 38 -  4500979 aaaatttcaagacaGTAGAGAAATTTTAGAATCTAAGA
i caeRem4.Crem_Contig0  C 0 I 2
s caeJap4.Scaffold18142   39882 23 +   343467 -------------AATA--TTAGCCTTAAAACTATAAA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2008462 29 +  4147112 I
e cb4.chrX              8729500  0 + 21540570 C
e caeSp111.Scaffold630  5740526 30 + 20921866 I

a score=182.000000
s ce10.chrX             3607008 2 + 17718866 TA
s caeJap4.Scaffold18142   39905 2 +   343467 TA
i caeJap4.Scaffold18142 C 0 I 4
e caePb3.Scfld02_0      2008462 29 +  4147112 I
e cb4.chrX              8729500 0 + 21540570 C
e caeSp111.Scaffold630  5740526 30 + 20921866 I
e caeRem4.Crem_Contig0   737723 2 -  4500979 I

a score=0.000000
s ce10.chrX             3607010 577 + 17718866  
e caePb3.Scfld02_0      2008462  29 +  4147112 I
e caeJap4.Scaffold18142   39907   4 +   343467 I
e cb4.chrX              8729500   0 + 21540570 C
e caeSp111.Scaffold630  5740526  30 + 20921866 I
e caeRem4.Crem_Contig0   737723   2 -  4500979 I

a score=182.000000
s ce10.chrX             3607587 20 + 17718866 AAATTTCACTTCCCCAA-------CCC
s cb4.chrX              8729500 27 + 21540570 aaacttcaatttccaaaaaatttccaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2008462 29 +  4147112 I
e caeJap4.Scaffold18142   39907  4 +   343467 I
e caeSp111.Scaffold630  5740526 30 + 20921866 I
e caeRem4.Crem_Contig0   737723  2 -  4500979 I

a score=273.000000
s ce10.chrX             3607607 1 + 17718866 A
s cb4.chrX              8729527 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2008491 1 +  4147112 a
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold18142   39907 4 +   343467 I
e caeSp111.Scaffold630  5740526 30 + 20921866 I
e caeRem4.Crem_Contig0   737723 2 -  4500979 I

a score=906.000000
s ce10.chrX             3607608 3 + 17718866 TAA
s cb4.chrX              8729528 3 + 21540570 caa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5740556 3 + 20921866 TGA
i caeSp111.Scaffold630  I 30 C 0
s caePb3.Scfld02_0      2008492 3 +  4147112 taa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   39907 4 +   343467 I
e caeRem4.Crem_Contig0   737723 2 -  4500979 I

a score=1386.000000
s ce10.chrX             3607611 3 + 17718866 TAT
s cb4.chrX              8729531 3 + 21540570 ttT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5740559 3 + 20921866 TAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2008495 3 +  4147112 tat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   39911 3 +   343467 TAT
i caeJap4.Scaffold18142 I 4 C 0
e caeRem4.Crem_Contig0   737723 2 -  4500979 I

a score=766269.000000
s ce10.chrX             3607614  969 + 17718866  
s cb4.chrX              8729534 1159 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   737725  954 -  4500979  
i caeRem4.Crem_Contig0  I 2 I 36
s caeSp111.Scaffold630  5740562  950 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2008498  960 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18142   39914  906 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=1596.000000
s ce10.chrX             3608583 4 + 17718866 TAAA
s cb4.chrX              8730693 4 + 21540570 GAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5741512 4 + 20921866 gaaa
i caeSp111.Scaffold630  C 0 I 32
s caeJap4.Scaffold18142   40820 4 +   343467 GAAa
i caeJap4.Scaffold18142 C 0 I 18
e caePb3.Scfld02_0      2009458 29 +  4147112 I
e caeRem4.Crem_Contig0   738679 36 -  4500979 I

a score=91.000000
s ce10.chrX             3608587 1 + 17718866 T
s cb4.chrX              8730697 1 + 21540570 T
i cb4.chrX              C 0 I 66
e caePb3.Scfld02_0      2009458 29 +  4147112 I
e caeJap4.Scaffold18142   40824 18 +   343467 I
e caeSp111.Scaffold630  5741516 32 + 20921866 I
e caeRem4.Crem_Contig0   738679 36 -  4500979 I

a score=0.000000
s ce10.chrX             3608588 680 + 17718866  
e caePb3.Scfld02_0      2009458  29 +  4147112 I
e caeJap4.Scaffold18142   40824  18 +   343467 I
e cb4.chrX              8730698  66 + 21540570 I
e caeSp111.Scaffold630  5741516  32 + 20921866 I
e caeRem4.Crem_Contig0   738679  36 -  4500979 I

a score=91.000000
s ce10.chrX             3609268 1 + 17718866 T
s caeJap4.Scaffold18142   40842 1 +   343467 t
i caeJap4.Scaffold18142 I 18 C 0
e caePb3.Scfld02_0      2009458 29 +  4147112 I
e cb4.chrX              8730698 66 + 21540570 I
e caeSp111.Scaffold630  5741516 32 + 20921866 I
e caeRem4.Crem_Contig0   738679 36 -  4500979 I

a score=1022.000000
s ce10.chrX             3609269 7 + 17718866 TAAATTC
s caePb3.Scfld02_0      2009487 7 +  4147112 TAAATTT
i caePb3.Scfld02_0      I 29 I 2
s caeJap4.Scaffold18142   40843 7 +   343467 taaacgC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8730698 66 + 21540570 I
e caeSp111.Scaffold630  5741516 32 + 20921866 I
e caeRem4.Crem_Contig0   738679 36 -  4500979 I

a score=-1723.000000
s ce10.chrX             3609276 4 + 17718866 TCTA---
s cb4.chrX              8730764 4 + 21540570 TCTA---
i cb4.chrX              I 66 C 0
s caePb3.Scfld02_0      2009496 2 +  4147112 TC-----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   40850 4 +   343467 ---ATTA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5741516 32 + 20921866 I
e caeRem4.Crem_Contig0   738679 36 -  4500979 I

a score=-1294.000000
s ce10.chrX             3609280 1 + 17718866 -A
s cb4.chrX              8730768 1 + 21540570 -A
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   738715 1 -  4500979 -A
i caeRem4.Crem_Contig0  I 36 I 3
s caePb3.Scfld02_0      2009498 1 +  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   40854 1 +   343467 C-
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5741516 32 + 20921866 I

a score=747912.000000
s ce10.chrX             3609281 1492 + 17718866  
s cb4.chrX              8730772 1486 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   738719 1446 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5741548 1477 + 20921866  
i caeSp111.Scaffold630  I 32 C 0
s caePb3.Scfld02_0      2009499 1521 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   40855 1597 +   343467  
i caeJap4.Scaffold18142 C 0 I 36

a score=6991.000000
s ce10.chrX             3610773 29 + 17718866 ACACCACAGTTGATGTCGCATGTGATCGG
s cb4.chrX              8732258 29 + 21540570 CAACAACAGTGGAGGTAGTGTTCGAGCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   740165 26 -  4500979 CAACAGCGGTGGA---AGCATGTGAGCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5743025 26 + 20921866 TGACAGCTGTGGA---AGCATGAGAACGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2011020 29 +  4147112 TGACGGAGTTGGAAGTAGCATGCGGCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   42452 36 +   343467 I

a score=11278.000000
s ce10.chrX             3610802 18 + 17718866 ATTCCGTTTCCAATCTGG
s cb4.chrX              8732287 18 + 21540570 ACTCCATTCCcgatctag
i cb4.chrX              C 0 I 654
s caeRem4.Crem_Contig0   740191 18 -  4500979 ACACCATTTCCGATCTGG
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold630  5743051 18 + 20921866 ACACCGTTTCCAATCTGT
i caeSp111.Scaffold630  C 0 I 39
s caePb3.Scfld02_0      2011049 18 +  4147112 GCGCCGTTTCCGATCTAG
i caePb3.Scfld02_0      C 0 I 70
s caeJap4.Scaffold18142   42488 18 +   343467 AACctgttttttattaaa
i caeJap4.Scaffold18142 I 36 C 0

a score=22155.000000
s ce10.chrX             3610820 117 + 17718866 AAAAGTTT--------------ACAAGT---------ATTATGAGCTCTATAC----------CATAATGAA--------CTCTTACCGGAACCTCTCTCACAGTGGATACACTCGAAGCAGTTGTCTTGCGGCTTCTATTTCCAGACTGAAATTATT
s cb4.chrX              8732959 104 + 21540570 aaaagttt--------------acgaTTTTTGCCC--CCAAC--------------------------------------CACTTACAGGAACTTCTCTCACAGTGGACACACTTGAGGCAGTTGTTTTACGGCTTCTACTTCCGGCCTAAACATGCT
i cb4.chrX              I 654 I 30
s caeRem4.Crem_Contig0   740231 142 -  4500979 aatactttttctaa--------acgttttttgccT--AGAacttgatttaaaa---aaacctttttaaaGAAT---GTATTACTCACCGGAACTTCTCGAACAGTAGATACGCTTGAAGCAGTTGTCTTGCGGCTTCTGCTTGACtgtaaaacatatt
i caeRem4.Crem_Contig0  I 22 I 28
s caeSp111.Scaffold630  5743108 128 + 20921866 ACAGGTTT--CAGA--------ACTATTCA-------ACAATAAAACTCATAAACAGAatattcccaaaaaaa-------aacttaccgGAACCTCTCGAACAGTCGAAACGCTCGAAGCTGTTGTTTTACGGCTTCTGCTTCCTGACTGAA------
i caeSp111.Scaffold630  I 39 I 34
s caePb3.Scfld02_0      2011137 148 +  4147112 ACAAATTT--CTGAAGTAGCACATTATTTATTTCCATAGAGTACCATTCATAA--CAAACttccacagaaaaaaatgaccaactTACCGGAACCTCTCTCACAGTCGATACGCTCGAAGCGGTAGTCTTACGGCTTCTGCTTCCTGCctaca------
i caePb3.Scfld02_0      I 70 I 39
s caeJap4.Scaffold18142   42506 102 +   343467 -------------------------------------aaaaggttttttttaa---------ctgtagACAAT-------TGCTTACTGGCATAGCTTTGATAGTCGAGACGCTCGACTCCGTCGATTTACGGCTTCTGTTCCCAGAATCAAGCT---
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3610937 45 + 17718866 TTCAAAATTTATTGGAAATACAAAAATTCTGCGAAATTTTTGGTT
e caePb3.Scfld02_0      2011285 39 +  4147112 I
e caeJap4.Scaffold18142   42608  0 +   343467 C
e cb4.chrX              8733063 30 + 21540570 I
e caeSp111.Scaffold630  5743236 34 + 20921866 I
e caeRem4.Crem_Contig0   740373 28 -  4500979 I

a score=50101.000000
s ce10.chrX             3610982 187 + 17718866 ACCTCGGAAGATTTCACGTTGGTGGCAGATGTCAACGCTGGAAGGTTGCCAAAGACGTCATCCAAGTTGATGCTGACAGCCGTGCTTCGCGACATGTCTGTACAAAAGACAC-----------------AATAATAGG-AGTTGT--------------TAAATTGTGGGAATGGAAAAATCGAGAACG-ATAAACAGTGAGAATTAAGAA-----AAATAGCAA
s cb4.chrX              8733093 175 + 21540570 ACCTCGGACGACTTGAAATTGTCGCCAGTGGTCAATGTTGGAAGGTTGCTAAAAACGTCATCCAAGTTGATGCTGACAGCCCCACTTCGTGACATGTCTGAAGAGATGGAGC---------------------------AGTTAAAAACAAAGAG----TGAACTGTGAGAA---GAACATGAAGAGcatat-----------aagaaaaa-----aataagaga
i cb4.chrX              I 30 I 3
s caeRem4.Crem_Contig0   740401 174 -  4500979 ACCTCAGAAGTCTTCTCGTTGGAAGAATACGCTAAAGTCGGAACGTTTCCAAAAACGTCATCCAAGTTGATGCTGACAGCCGTGCTTCTCGACATGTCtaaa------aatc---------------------------ggttcagtaca---------TAAAATGCGGGGA---AAAAGCACAGTTTTTATGGACGGG-AGAAAGTGAAA-----ACTTGGAGA
i caeRem4.Crem_Contig0  I 28 I 3
s caeSp111.Scaffold630  5743270 187 + 20921866 ACCTCAGAAGACTTCACATTAGTGGCCGTCGTAAGAGCTGGAAGATCGCCAAAAACGTCATCCAAGTTGATGCTTACCGCGTTGCCTCGCGACATGACTACA------AATC----------------agaaaacgtt-ggttgagaatgaa-------tgaaacgtgagaa---aaaagaatgg-----aagagtggagaaaaaCATAGATATGCAAATGGAGA
i caeSp111.Scaffold630  I 34 I 10
s caePb3.Scfld02_0      2011324 185 +  4147112 ACGTCCGAAGTCTTTACATTAGTGGCAGTCGTTAGAGTTGGAAGATTGCCAAAAACGTCATCCAAGTTGATGCTGACAGCATTGCTTCGCGACATGCCTATA------AAAT-----------------GAAAGCGTTaggttttgaatgaa-------tgaactgTGAGAA---CAAAATGTGA-----ACGATcgga-aaaaacagaga-atagaaatggaaa
i caePb3.Scfld02_0      I 39 I 98
s caeJap4.Scaffold18142   42608 175 +   343467 -------------------------------TCAACACTGGAAGTCCGCCAAAGACATCGTCCAAGTTAATGCTGACAGAGCCGACTCGCGACATGCCTATA------AATCTAATAATTGCCTGTTAAAACAATGTCTCggcgaaaataaaaagaagatcCATTTAGAAAG---CAAAGCATAG-----ACgtttagtgaaaaaaaacgg-----gCGGCCAAA
i caeJap4.Scaffold18142 C 0 C 0

a score=-8434.000000
s ce10.chrX             3611169 26 + 17718866 AACAAACTTATGCTAC--------------------ATATAAAATA
s cb4.chrX              8733271 36 + 21540570 aATAAACA-AGGT--TGGAAGAGT----GAACA---GTGTGAGTCA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   740578 42 -  4500979 GAAACGCATATGTAATGGAGAAGT----GAGAACTGTTGTGAGtca
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5743467 10 + 20921866 ------------------------------------GTGTGAGTCA
i caeSp111.Scaffold630  I 10 C 0
s caeJap4.Scaffold18142   42783 27 +   343467 ----------------AAATGAGTCATGAAACA---GTGGAAAATA
i caeJap4.Scaffold18142 C 0 I 49
e caePb3.Scfld02_0      2011509 98 +  4147112 I

a score=-2095.000000
s ce10.chrX             3611195 38 + 17718866 TGATTATTTCTGCAAACTTTGCTCAACTATC-------------ATCA-----AAG-----------------
s cb4.chrX              8733307 54 + 21540570 TGGTAATTTTTGGAGACCTT--TTAAATATGGAATGTTTCTTCGATCAGTTACATG-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   740620 46 -  4500979 ttctaattttttcagacttt--tga---aTAACATGCTTCTCCTATGA-----ATG-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5743477 63 + 20921866 TGTGAATCTT--GAGACCTT--TTAAGAATGGAATGCTGCTCC-ATAA-----GTGACTCACAATCATCAGAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2011509 98 +  4147112 I
e caeJap4.Scaffold18142   42810 49 +   343467 I

a score=273.000000
s ce10.chrX             3611233 1 + 17718866 A
s cb4.chrX              8733361 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   740666 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2011509 98 +  4147112 I
e caeJap4.Scaffold18142   42810 49 +   343467 I
e caeSp111.Scaffold630  5743540 0 + 20921866 C

a score=29337.000000
s ce10.chrX             3611234 149 + 17718866 ----CAAACCATTCCTA----------TTGTACTCCCCGTG---------AAAT---TATATTTGAAAC-----AGAAAA-----AC--CTGGCT-GAAAACGGAGATGATTGACC---GTGACGAAAGATCGGTAAAAGGCA--------AATTGC------------------ACGGTGTAATGGAGTGCAAAGACAGAAATGGC----AGAGCACTGC-
s cb4.chrX              8733362 195 + 21540570 ----CTCACTACAACTC---CCACTGACACCCCATAAAATATGGAAcacaaaatttgcaaaaacagAAT-------GAGT-----CCAGTTGCTC-AAAAATGG---TGATTGACC---GCGACGAAAGATCGGGAAAAGACAAGAGCAGAAAGTGTGTGAAAAGAAGTATTGCGGAGTTGTAATGGAGTGCAAAGTCGGCAATGGCATGAAGAGCACCAC-
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   740667 179 -  4500979 ----CTCACAACTACTAGGGTCACAGATTCTACTCCCACTA-Ggaatcaaaaat---ccaaaaaagacTTCTATCGGAGt-----cc--ttatttaaaaaatgg---tgATTGACC---GCGACGAAAGATCGGTAAAAGACAAGAGCAGAAAGTGT------------------GAGGTGTAAAGGAGTGCAAAGTCGGAAATGGC---AAGAGCACCGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5743540 161 + 20921866 -------------ATTT-----GCATTTTACACACCCACCA-ACTAcagtaaaa---aagaaagggaag-----aaaaataacgatC--CTTTCG-ATAAATGG---TGATTGACC---GCGACGAAAGATCGGTGAAAGACAAGAGCAAGAAGTGT-----------------GGAGGTATGAAGGAGTGCAAAGT----AATGGC---AAAAGCAGTGC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2011607 164 +  4147112 -------ACCAAAAGTT-----CCAGTTT-TACACCCACAA-GCAACccaaaaa---cacagaaaaagg-----TAGAAC-----CC--CCACCG-ATAAATGG---TGATTGACC---GCGACGAAAGATCGGTATAAGACAAGAGCAGAAAATGT------------------AAGTTGTAAAGGAGTGCAAAGTCGGAAATGGC---AAGAGCACCGC-
i caePb3.Scfld02_0      I 98 C 0
s caeJap4.Scaffold18142   42859 140 +   343467 caATCCAATCTCAATCA-------ATTTTCCgctttgatta---------aaaa------------aat-------gagc-----CC--C------CTGAATGG---TGATTGATCGCGGCGACGAAAGATCGGT------TAAGAGCAGAAACGGG--------------------TCTGTAATGGagtgcaaaaataaaagtgAC-----AATCGACGTC
i caeJap4.Scaffold18142 I 49 C 0

a score=1627.000000
s ce10.chrX             3611383 7 + 17718866 TTAAAAG
s caeRem4.Crem_Contig0   740846 7 -  4500979 TTGAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5743701 7 + 20921866 TCGAAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2011771 7 +  4147112 TTGAAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   42999 3 +   343467 TTG----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8733557 11 + 21540570 I

a score=79191.000000
s ce10.chrX             3611390 211 + 17718866 TTTCCTGTC-AAACCGTGTCG--CTTATCAATG--CGTGCCACGCATTACACCTTCTCGCGTCAGGCGCCAAAAACGTATTGTATATGCAGCTAACAA--------------CCGTAACA---------ATGGAACGAGAG------------------TATTGACGAGTTAAAT-CAAAAT----AAAAAATCGGTGGAGAGCGCTGAACTGAACTGAGAGTGA---GAGGGGATAAA-AACAAAGTTCGCGTGTTGTTT--GCCGA-
s cb4.chrX              8733568 219 + 21540570 TCTCCTGCC-AAAAC-TGTGC--CTTATCAGCGCATGTGCCACGCATTACACCTTCTCGCGTCAGGCGCC--ATACGTATTG--TATGCAGCTAACACAAAACCCCCACTCTCCGT-ACA---------ACAGAATGAGAGTATTGGAGAGGGTGACTATATTGACGagtaaa----aaaat--agaacaaaa---taaaaaata--------------gagtGAACTGGAGGGATAAA----AACATTGTTCTATTCGTG----TGA-
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   740853 204 -  4500979 CCTATTGCC-AAATCGTGTCT--CTTATCAGCG--TGTGCCACGCATTACACCTTCTCGCGTCAGGCGCC--ATACGTATTG--TATGCAGCTAACAA--------------CCAT-ACA---------ATAGAACGAGAGTATTG--------GCCACTATTGACGagtaaaat-caaaat--aaaaaaaga---agaagaggact------------GCGTGA---GGAGGGATAAAAAACAACGTTGGTTTGGTTCTA--GCTGA-
i caeRem4.Crem_Contig0  C 0 I 46
s caeSp111.Scaffold630  5743708 189 + 20921866 CCTATTGCCAAAACCGTGTCTCTCTTATCAGTA--TGTGCCACGCATTACACCTTCTCGCGTCAGGCGCC--ATACGTATTG--TATGCAGCTAACAA--------------CCAT-ACA---------ATAGAACAAAAG------------------TATTGACGagtaaaat-taaaat----aaaaaac---agaagagaacC------------A---------CAGGGATaaaaaaaCACACACGTTTTGATTCA--GCGGC-
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2011778 205 +  4147112 CCTCCTGCC-AAACCGTGTCCCTCTTATCAGTA--TGTGCCACGCATTACACCTTCCCGCGTCAGGCGCC--ATACGTATTG--TATGCAGCTAACAA--------------CCAT-ACA---------ATAGAACGAGAGTATTG--------GTGACTATTGACGAGTaaaat-caaaatagagaaaaaat---gaaaaagaact------------gGAGAA---CGAGGGATAAAAACCAACACACATTTCAATATA-----GA-
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   43002 190 +   343467 ------GCA-AAACCGTGTTT--CTTATCAGTTT-TGTGCCACGCATTAAAC---------TCAGGCGCC--ACACATTTTG--TATGCAGCTAACAA--------------CCAT-GTACATACACATGTACATTGAAAG---------------------TGAAGAGACGATCATAGAGT--GGgtaaaat---caaaataaaat------------aaacga---gAGCGGATCAAAAATAGAGTGCGTTTTGATTCCCCTCTGaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-9725.000000
s ce10.chrX             3611601 54 + 17718866 GACTAGC-----AGATGGTTGGGTTTTATTTCTACAAAAATGAGTAGATGCCATCATAA
s cb4.chrX              8733787 47 + 21540570 GGCTAGC----ACGATGGACGAATTGCTTTT---CTGTGTT-TCTAGTGGTCATA----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5743899 56 + 20921866 GGCTTGCAATGAAAAACAGTGAGATACTTTTT--CTGTGGC-AGTCGATGTCATTATTC
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2011985 51 +  4147112 GGCT-------AACAGcggtgaaatatttttctattgtcGT-ATTAACGgacattattt
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   43192 33 +   343467 -------------aaaaaGCAGG-----------CTGAAGT-GACAGATGTCGCCAAA-
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   741057 46 -  4500979 I

a score=3044.000000
s ce10.chrX             3611655 67 + 17718866 TTTTGGA---ACGGGTC----------------AAATTTTACAATACATCCCAATTGAAGGACATAATAGTTTACAGTTTAATTTG
s cb4.chrX              8733834 69 + 21540570 TTTTAAACGCGCGGGTTTAATAGTTCAATTTTAGAGGTTTACAGTA-------ATGGGAG----------TTTACAACTTAATTTG
i cb4.chrX              C 0 I 1907
s caeRem4.Crem_Contig0   741103 73 -  4500979 TTTTGGA---ACAGGTCAAACAGTTTAGATT--GAAGTTTACAACA------CATAAAAGGGCAGTA--TTTTACGGTTTAATTTG
i caeRem4.Crem_Contig0  I 46 I 1
s caeSp111.Scaffold630  5743955 81 + 20921866 AGTTGGA---ACAGGTCAAACAGTTTAATTC--ACAGTTTACAGTTCATTCACATTATAGGACACAGCCATTTACAATTTAATTTG
i caeSp111.Scaffold630  C 0 I 572
s caePb3.Scfld02_0      2012036 79 +  4147112 -tttgga---acaggtcGAATAGTTTAATTC--ACAGTTTACAGTTCACCGCCATTAAAGGGCGGAA-CATTTACGACATAATTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   43225 54 +   343467 -----------------------TTTCgttt----cattttcttctttttcctattGTA---CATAATATCGCAC-ATCTGTTTT-
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3611722 1 + 17718866 A
e caePb3.Scfld02_0      2012115 0 +  4147112 C
e caeJap4.Scaffold18142   43279 0 +   343467 C
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744036 572 + 20921866 I
e caeRem4.Crem_Contig0   741176 1 -  4500979 I

a score=-3070.000000
s ce10.chrX             3611723 49 + 17718866 CTAGAAAATGGA-----------ACGAAAGTTCTTA----------AGATACAATCTTTTAGTGAAAAAA
s caeRem4.Crem_Contig0   741177 66 -  4500979 --AGAAAGCGAATCTTAATT--CAAGGAAAAACACCTGCATTACATAGATATCATctttgaaagaaaagt
i caeRem4.Crem_Contig0  I 1 I 38
s caePb3.Scfld02_0      2012115 56 +  4147112 -TGGAAAGCGGa---caatttgtaaaaaaaaacaca----------agatAGCATCTCAAAGGGGAAAAA
i caePb3.Scfld02_0      C 0 I 883
s caeJap4.Scaffold18142   43279 30 +   343467 -----------------------------AAACTCT-----------GATCTGAACTTTATATGAAGAGA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744036 572 + 20921866 I

a score=-25551.000000
s ce10.chrX             3611772 236 + 17718866  
s caeRem4.Crem_Contig0   741281 578 -  4500979  
i caeRem4.Crem_Contig0  I 38 I 7
s caeJap4.Scaffold18142   43309 268 +   343467  
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2012171 883 +  4147112 I
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744036 572 + 20921866 I

a score=15133.000000
s ce10.chrX             3612008 219 + 17718866 ---------------AGTTTCA------GGACTGTTT----------------GCTCGC---ATGTAAA---GGACTGAACACATTATTGC-TTTTATTGAGAACAACATTGCATAAG--ATTGAATACTTTTGAAAAGA------GGGGAAAAAAGAGATGCTGAA--------------------CAAA-AAAACGTGAACTGAAATTGGAAGAAAAAGGTGAAACCCATCAAATACATGTCTAGCGGAGGAA----------GGTTGGAAAAAAATA-CAAGCGAAAACAATTGAAAAAT--
s caeRem4.Crem_Contig0   741866 204 -  4500979 ---------------TGTTTCAAGACACAAATTGTTT----------------GCTTGTTGAA-ATAAC-------TGAACACGTTATTGC-TTTTATTGAGGACAACATTGCATAAAatttaatacagtttttcaaaga------taCAGAAAAAT------------------------------------AACTGCAAAATGAAActggaggaaaaa---gaaacCCATCAAATACAAGTCTAGCGGAAGAA-------------GTTGAAAACGTA-CAagcagaaacaaaaataagaa--
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5744608 193 + 20921866 ---------------AGTTTCAAAGCG-AAACTGTTT----------------GCTCGT--AACATAAACGAAAATTGAACACATTATTGC-TTTTATTGAGGACAACATTgca------ttggaaaaat---gaataag------ttTAG-------------------------------------------ACGGTGGAGAAGTGCAATGAGAACAG---AAAACCCATAGGATACAAGTCTAGCGGAAAAA-------------TAAGATTAGATA-GAGGAAAATACAAGCATCATAA--
i caeSp111.Scaffold630  I 572 I 208
s caePb3.Scfld02_0      2013054 193 +  4147112 ---------------agtttcaaaatg-aaactgttt----------------GCTTGTTGAACACAGA---------AACACATTATTGCTTTTTATTGAGAA-GACATCGT-------TCGGAattatatcaaaaaaa------tttgggaa---------------------------------------aattgtGCAAAAGAACTGGAGGAGAAA---GAAACCCATCATATACAAGTCTAGCGGAAAAT-------------TGAAGTAAAGTACAAAGCGGATAAAAATACAATGA--
i caePb3.Scfld02_0      I 883 I 5
s caeJap4.Scaffold18142   43577 288 +   343467 ATTCCTCTTATCAGCAATATCT------AAAATGTTTCATATATTTTAAAAAGTCATGTTATGTTTAAA--AGAACAGAACACATTATTGC-ttttattttcgataattttgcataggttgtgaaaaaatatgacaaaaaaagtgttataaatatatatatatttaaaacagagagagagagagatgcaAACAAATTGTGCACTGAATTTGGA-----AA---ATGACCCATCACGTACAAGTCTAGCGAGTGAAAATGTTTTCAAGCAGGGAGAATGTATAAATAGGAAATAGGAAATACAGAT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8733903 1907 + 21540570 I

a score=-438.000000
s ce10.chrX             3612227 3 + 17718866 GAA-
s caeRem4.Crem_Contig0   742070 3 -  4500979 gaa-
i caeRem4.Crem_Contig0  C 0 I 119
s caePb3.Scfld02_0      2013252 3 +  4147112 caa-
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   43865 3 +   343467 -AAT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I

a score=-829.000000
s ce10.chrX             3612230 1 + 17718866 -T
s caePb3.Scfld02_0      2013255 1 +  4147112 -t
i caePb3.Scfld02_0      C 0 I 137
s caeJap4.Scaffold18142   43868 1 +   343467 G-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I
e caeRem4.Crem_Contig0   742073 119 -  4500979 I

a score=889.000000
s ce10.chrX             3612231 18 + 17718866 AAGATTCTCCCGAGTTGA
s caeJap4.Scaffold18142   43869 18 +   343467 AAGTTTTTACCaagttaa
i caeJap4.Scaffold18142 C 0 I 180
e caePb3.Scfld02_0      2013256 137 +  4147112 I
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I
e caeRem4.Crem_Contig0   742073 119 -  4500979 I

a score=0.000000
s ce10.chrX             3612249 959 + 17718866  
e caePb3.Scfld02_0      2013256 137 +  4147112 I
e caeJap4.Scaffold18142   43887 180 +   343467 I
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I
e caeRem4.Crem_Contig0   742073 119 -  4500979 I

a score=-515.000000
s ce10.chrX             3613208 74 + 17718866 TGTTTTCAAAACATGAAAAAATGAATCAGGAAACTTTTCTGTATAAAAAATTA-------TCTCAAACGTTTAAAACAC-AC
s caeRem4.Crem_Contig0   742192 58 -  4500979 tgttttcgaaattt--gaa---atattcagataCCTCC---------AAAGTG-------TCTCAAGTTTCCAAAATAG---
i caeRem4.Crem_Contig0  I 119 C 0
s caePb3.Scfld02_0      2013393 68 +  4147112 tgttttcaaagtttgagaa---gaattaaaaaaatttt---------agtagGAACTCATTCTCAAACTCTGGATTCAAC--
i caePb3.Scfld02_0      I 137 C 0
e caeJap4.Scaffold18142   43887 180 +   343467 I
e cb4.chrX              8733903 1907 + 21540570 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I

a score=-1527.000000
s ce10.chrX             3613282 18 + 17718866 CCCACCATTCAATTTAAA
s cb4.chrX              8735810  4 + 21540570 --------------CCCA
i cb4.chrX              I 1907 C 0
s caeRem4.Crem_Contig0   742250 16 -  4500979 --TACCATATTGGTCCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2013461 15 +  4147112 ---ACCACCAATTTCCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   43887 180 +   343467 I
e caeSp111.Scaffold630  5744801 208 + 20921866 I

a score=1832.000000
s ce10.chrX             3613300 8 + 17718866 ACTAAATT
s cb4.chrX              8735814 5 + 21540570 ---ACATT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   742266 5 -  4500979 ---AAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2013476 5 +  4147112 ---AACGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   44067 8 +   343467 ACTAAATT
i caeJap4.Scaffold18142 I 180 C 0
e caeSp111.Scaffold630  5744801 208 + 20921866 I

a score=116769.000000
s ce10.chrX             3613308 485 + 17718866  
s cb4.chrX              8735821 453 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   742271 519 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5745009 507 + 20921866  
i caeSp111.Scaffold630  I 208 C 0
s caePb3.Scfld02_0      2013481 498 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   44075 384 +   343467  
i caeJap4.Scaffold18142 C 0 I 187

a score=-3169.000000
s ce10.chrX             3613793 42 + 17718866 GACG----GTTTACGAGAC--AAG--GCAGCAACAATTCCTGTACATTGC
s cb4.chrX              8736274 42 + 21540570 gATGAAAGAGGTACAGTG---ACA--ACAGCAAAGTGTGCAGCAGTG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   742790 47 -  4500979 gatgaaa-atgtatGCTGTACGCG--ACAGCAAAGTTTCTTGTGCTATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5745516 35 + 20921866 GATGAAA-GTTTAT-------GCG--ACGGCAAAGTTTT-----CTGTGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2013979 40 +  4147112 GATGAAA-ATATAT-------TCGATACACACAAGTTCT--GTGCTATGc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   44459 187 +   343467 I

a score=105516.000000
s ce10.chrX             3613835 142 + 17718866 TCCTTATCAGTTTTATCG-------C-TTTTGT-----------CATACAAAATGATAATTTAAGACACGTACTTGTG-----CATAACGTATCGGACAGAGTAGATGACAATTTGACACAGTGAAATGAGGGATCCACCGGCGAACAGAGAGAATTGACCTGGAA
s cb4.chrX              8736316 144 + 21540570 T---------TTTTATCG-------C-GCTTGTTAatacacatacacacaaaaTGATAATTTAAGACACGTACTTGTGTGCTAAAAATCGTGA-----AATGTAGATGACAATTTGACAGAGAGAAATCAGGGAACCTCCGGCCCAAAGGGaaaattgacctgaaa
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   742837 126 -  4500979 T---------TCTTATCA-------C-TATTGT-----------CATTCAAATTGATAATTTAAGACACGTACCTATG-----AAAAACGTAACGAGCGAGGTAGATGATGATTTGGCAGAGCGAAATGAGGGATCCGCCTGCCCAAAGTGAGAATTGA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5745551 133 + 20921866 T---------TCTTATCG-------C-TTTTGT-----------CATTCTCAATGATAATTTAAGACACGTACTTGTG-----CAAAACGTAACGGACGGAATAGATGACAATTTGGCAGAGTGAAATGAGGGATCCGCCAGCCCATAGAGAAAATTGAcctggaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2014019 134 +  4147112 t---------tcttatca-------ctttttgt-----------cATACACAATGATAATTTAAGACACGTACTTGTG-----CAAAACGTATCGGGCAGTGTAGATGACAATTTGACAGAGCGAAATGAGGGATCCACCGGCAAAGAGAGAGAATTGACCTGCAA
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold18142   44646 151 +   343467 T---------TCTTATCAAACagttc-tttctttctttctctttcgTACAAACTGATAATTTGTGACACGTACCTGTG-----CAACACGTATCGGACAGAGTagatgacaatttgacataaCGAAATAAGGGATCCGCCAGCCCACAGTGAAAATTGACCTGAAA
i caeJap4.Scaffold18142 I 187 C 0

a score=494.000000
s ce10.chrX             3613977 4 + 17718866 AACG
s cb4.chrX              8736467 4 + 21540570 gata
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold630  5745684 4 + 20921866 aata
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   44797 4 +   343467 GGTG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2014153 25 +  4147112 I
e caeRem4.Crem_Contig0   742963 0 -  4500979 C

a score=-3107.000000
s ce10.chrX             3613981  1 + 17718866 A-------------------------------------------
s cb4.chrX              8736471 44 + 21540570 aatTACgaccaagaaaaaattttcaatcagaAAAGTGGTCATAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5745688  1 + 20921866 a-------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2014153 25 +  4147112 I
e caeJap4.Scaffold18142   44801  0 +   343467 C
e caeRem4.Crem_Contig0   742963  0 -  4500979 C

a score=-2403.000000
s ce10.chrX             3613982 189 + 17718866 CAATTTTAATATTGCAATACACTAACTAACAGTTGG---TATTT-----TTAAATTTTTATAAAGCTGTTAATTTGCAGTTT-TCACCTATC-------GTAAATATAGAGGT--------------------------------TGACAAA-----AAAATATT------------------TTCTACATTTT----TAATATTCTAATTATGCTTTATTTTTCATTTA------AACACCTCAGGCATTGT---TTGTAAATG-----------ACGCATTT
s cb4.chrX              8736515 282 + 21540570 AAGTTTGAAGATTGTTGTTCATAAGACTACTGATTACGGTACTAGCcaataaaatatttagaaatca--tagttttcagttgatttcctgccattttgagcaaattcaggagtctggagctcggatatcaagtttctgatcactttgaaaaatccggaaaatgtaaatcagacctagattaaataCTTCAtgttcacataattttttgaaaattcccagcTTCTCAGCTATTTTCCGATATCTTAAAtactgaaaactgaaaacgtgaaaaaaaacatgtgtct
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2014153  25 +  4147112 I
e caeJap4.Scaffold18142   44801   0 +   343467 C
e caeSp111.Scaffold630  5745689   0 + 20921866 C
e caeRem4.Crem_Contig0   742963   0 -  4500979 C

a score=-14316.000000
s ce10.chrX             3614171 168 + 17718866 CTTGGAAAACTGTTAGTTTTTGAAAACTTCGGTCATATAAACTATGTCAATCTT--------------ATTAAGACAAAGTCCCTACTACCGCGATTCAAATTTTAAATTTA-------------------------------CTGAA-----------TTATGCAACTTTAATCGAGGAGAGGATTCACAAATTC----------------------------------------------TTATCATTAT-----ACAATCATCATACAACTA
s cb4.chrX              8736797 265 + 21540570 ttcagaaatcggcgaatgactgaaaa--------ataggaatttt-cgaatgatCGTTAacgcgaaaattcaaatccaaGTCTATTTTA-CACCTTGCAAGTTTTCGATGTGATCGGAAACATggcagccaagctccagattcctgaaaacAGCCAAAATCCCGGAAATAAGATGGAAGGTACGTTTTCGTATATCTCAATGACCGGTAATGTAACAATCTAGAATTTCCATCGATctagtttttctatttttcagaattgtggTTTCACAGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   742963  49 -  4500979 ------------------CCTGAAAA--------ACGAAAGCTTT----ATGCT--------------TTCAAATCAA-----------------------------------------------------------------ctgaa----------------------------------------------------------------------------------------------tttcgatttt-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2014153  25 +  4147112 I
e caeJap4.Scaffold18142   44801   0 +   343467 C
e caeSp111.Scaffold630  5745689   0 + 20921866 C

a score=-1105.000000
s ce10.chrX             3614339 3 + 17718866 -TGT
s cb4.chrX              8737062 3 + 21540570 -CAA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   44801 2 +   343467 TT--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2014153 25 +  4147112 I
e caeSp111.Scaffold630  5745689 0 + 20921866 C
e caeRem4.Crem_Contig0   743012 0 -  4500979 C

a score=172.000000
s ce10.chrX             3614342 9 + 17718866 AATTTACTC
s cb4.chrX              8737065 7 + 21540570 --CAtactc
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630  5745689 4 + 20921866 -----aatt
i caeSp111.Scaffold630  C 0 I 5
s caeJap4.Scaffold18142   44803 9 +   343467 CAGTTACTC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2014153 25 +  4147112 I
e caeRem4.Crem_Contig0   743012 0 -  4500979 C

a score=412988.000000
s ce10.chrX             3614351 576 + 17718866  
s cb4.chrX              8737074 575 + 21540570  
i cb4.chrX              I 2 I 4
s caeRem4.Crem_Contig0   743012 551 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5745698 578 + 20921866  
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      2014178 576 +  4147112  
i caePb3.Scfld02_0      I 25 I 4
s caeJap4.Scaffold18142   44812 576 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3614927 4 + 17718866 TAAA
e caePb3.Scfld02_0      2014754 4 +  4147112 I
e caeJap4.Scaffold18142   45388 0 +   343467 C
e cb4.chrX              8737649 4 + 21540570 I
e caeSp111.Scaffold630  5746276 0 + 20921866 C
e caeRem4.Crem_Contig0   743563 0 -  4500979 C

a score=-14149.000000
s ce10.chrX             3614931 122 + 17718866 AGTTTAGATATTCGATAAAGGCAACCAAAAAAATGTGTAGTCCAAGATGGGGTGAACTTTTGTTTCAAAATGTAGTACTCGAGTTGAAAACACTTCCATTATTGCAGAAAAAAAGCTAGGAA
s caeRem4.Crem_Contig0   743563   8 -  4500979 ------------------------------------------------------AACTcctg------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2014758  25 +  4147112 -----------------------aacaga-------------------------aaattcaatt-----------------------------------------aggaaaaaa--------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   45388  19 +   343467 ----------------------------gaaaatattta---------------aattatgG------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8737649   4 + 21540570 I
e caeSp111.Scaffold630  5746276   0 + 20921866 C

a score=-4053.000000
s ce10.chrX             3615053 37 + 17718866 AATCTGTTACAATCAGCTTGTTTAGGTGAAAGtttaa
s caeSp111.Scaffold630  5746276  9 + 20921866 ----------------------------AAACCATCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2014783  3 +  4147112 ----------------------------------tgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45407 14 +   343467 -----------------------AGTTGTATctttaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8737649  4 + 21540570 I
e caeRem4.Crem_Contig0   743571  0 -  4500979 C

a score=-2682.000000
s ce10.chrX             3615090 14 + 17718866 aaaattaaaattta
s cb4.chrX              8737653  7 + 21540570 -------aaaatta
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   743571 12 -  4500979 --aaacaaaattta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5746285 11 + 20921866 ---AAATTAGTTTG
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2014786 11 +  4147112 ---aagaaaatttA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45421  3 +   343467 -------aaa----
i caeJap4.Scaffold18142 C 0 C 0

a score=-9279.000000
s ce10.chrX             3615104 53 + 17718866 acttttaaaaaCCTAGGATTATTCGGAATTTTATTCTGTT------GTGTATTGTATTT
s cb4.chrX              8737660  9 + 21540570 ----------------------------------t----------------ttaatgcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   743583 11 -  4500979 ----------------------------------tc--------------attattatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142   45424 21 +   343467 ------------------------------------ctttaaaaaagtgttttattt--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2014797  0 +  4147112 C
e caeSp111.Scaffold630  5746296  2 + 20921866 I

a score=-1210.000000
s ce10.chrX             3615157 10 + 17718866 TAGGCACTAT-
s cb4.chrX              8737669 10 + 21540570 gggcaacaat-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   743594 10 -  4500979 ttattactAT-
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold630  5746298 10 + 20921866 -TGTTGTAATT
i caeSp111.Scaffold630  I 2 C 0
e caePb3.Scfld02_0      2014797  0 +  4147112 C
e caeJap4.Scaffold18142   45445  0 +   343467 C

a score=-6203.000000
s ce10.chrX             3615167 113 + 17718866 TTTTTGAAGCCAATATGGCCTAGAAGTCGTGTCGTGGCCTACGATTAATTTGCGCACAAAATCAACTTCTGCGACTTTTTTTCGATTTCCATCTATTTTATTTTTAGTTATTA
s cb4.chrX              8737679  14 + 21540570 tttttgactatAAT---------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  5746308   9 + 20921866 -----AAAAACAAC---------------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2014797   0 +  4147112 C
e caeJap4.Scaffold18142   45445   0 +   343467 C
e caeRem4.Crem_Contig0   743604  10 -  4500979 I

a score=0.000000
s ce10.chrX             3615280 12 + 17718866 GAAAATTTGCTC
e caePb3.Scfld02_0      2014797  0 +  4147112 C
e caeJap4.Scaffold18142   45445  0 +   343467 C
e cb4.chrX              8737693  1 + 21540570 I
e caeSp111.Scaffold630  5746317  0 + 20921866 C
e caeRem4.Crem_Contig0   743604 10 -  4500979 I

a score=91.000000
s ce10.chrX             3615292 1 + 17718866 A
s caeJap4.Scaffold18142   45445 1 +   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2014797 0 +  4147112 C
e cb4.chrX              8737693 1 + 21540570 I
e caeSp111.Scaffold630  5746317 0 + 20921866 C
e caeRem4.Crem_Contig0   743604 10 -  4500979 I

a score=574066.000000
s ce10.chrX             3615293 885 + 17718866  
s cb4.chrX              8737694 887 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   743614 884 -  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5746317 875 + 20921866  
i caeSp111.Scaffold630  C 0 I 94
s caePb3.Scfld02_0      2014797 908 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45446 900 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=2350.000000
s ce10.chrX             3616178 4 + 17718866 AAAA
s cb4.chrX              8738581 4 + 21540570 GTAA
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   744498 4 -  4500979 gaaa
i caeRem4.Crem_Contig0  C 0 I 111
s caePb3.Scfld02_0      2015705 4 +  4147112 gaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   46346 4 +   343467 GAAA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5747192 94 + 20921866 I

a score=146.000000
s ce10.chrX             3616182 17 + 17718866 TAGAAGGAAATTTTAGT
s cb4.chrX              8738595 17 + 21540570 gaaaagagaaatcTAGT
i cb4.chrX              I 10 I 101
s caePb3.Scfld02_0      2015709 11 +  4147112 ------acaaatacgGT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   46350 13 +   343467 ----TTGAACatttaat
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5747192 94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=-6420.000000
s ce10.chrX             3616199  90 + 17718866 TGGCATTATTGTCTGCCGACTATTTTCTG---------------GGAAACAATTCTACA-CGATGCGCCATGTTGTTCTAAG------ATTTT------------TCAATAAAACTTTATATAT
s caePb3.Scfld02_0      2015725  43 +  4147112 --------------ACTGATTAGTT--------------------GAATC----------------------TTATTCTAA-------------------------TAATATGTTTTTGTATAT
i caePb3.Scfld02_0      I 5 I 81
s caeJap4.Scaffold18142   46363 113 +   343467 ttgtttattcttttactatttgttttctgtttttttatttttcaaaaatc-----tataGAGGCATGCTCATTTATTCTAAATTGAGCATCTTACGGCACTGCCCTCAGGGAACCTTT------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192  94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=-348.000000
s ce10.chrX             3616289 82 + 17718866 ATGaagtgcttaaaaatggtcttgaacttgccaattttcgtt---------------------ataatttgataatcgacaattggcagctcgcaggtcagtt
s caeJap4.Scaffold18142   46476 89 +   343467 -CGGAGGG---AATAACAACTTTTAGCCTGCTAATTTTAGGCTTGGCTTGGACAAAGAGCCGAATATTTTGATAGATAAATACGCACAACT----------TT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2015768 81 +  4147112 I
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192 94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=972.000000
s ce10.chrX             3616371 39 + 17718866 tttaacattttttctagaattttcagcttaaaaaatgat
s caePb3.Scfld02_0      2015849 36 +  4147112 TTTACCATTTCttcgagaa---aaagtttcaaaagctGA
i caePb3.Scfld02_0      I 81 C 0
s caeJap4.Scaffold18142   46565 34 +   343467 TATAACACTTC-----AAATatgtgattttaaaaatgtt
i caeJap4.Scaffold18142 C 0 I 188
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192 94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=735.000000
s ce10.chrX             3616410 12 + 17718866 attttcagataa
s caePb3.Scfld02_0      2015885 12 +  4147112 GTTTTTGGATAA
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold18142   46599 188 +   343467 I
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192 94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=0.000000
s ce10.chrX             3616422 141 + 17718866 accaagtgattttttatattttgacactttcttacttgaagaaatgtgtgaacaaggcgcaaaaggtcatcatgtGAAAAAAAATCGGAAATTTTTTGAATACTGAAACTCTATATATATATCTCTATATAAGTATACTAA
e caePb3.Scfld02_0      2015897 148 +  4147112 I
e caeJap4.Scaffold18142   46599 188 +   343467 I
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192  94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=276.000000
s ce10.chrX             3616563 37 + 17718866 GCTAATTTTTC-TGAAAAGGAAACGGGAAATGT-TAATT
s caeJap4.Scaffold18142   46787 36 +   343467 gaggattttccataaaaaggacac---aaatgtatgaga
i caeJap4.Scaffold18142 I 188 C 0
e caePb3.Scfld02_0      2015897 148 +  4147112 I
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192 94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=-14508.000000
s ce10.chrX             3616600 358 + 17718866 ATGTGGGTGAAACATCCTCTGAAAAAGTAACTGATTTT------CTAACTCAACGACT---AAAAATTTACGGCACATTTTAAATTGTACCCAACA--------------TAAAATTAGAAAAAAACTTGAATTGGCCGGGTAAACCTTCTTCT---ACTTGTAAAAATGCCATTTTATTAAATATAGAACGCCAACATT--TTGAGCGGTAA-------TTTAAATTTTATGGTATATTACCCTCACCCACAACTATTTATTTG----AACGGTTGAGGAATTTAAAATTATACAAAGAACTTTGACGTAAC---AATATTCTTTCCCAAACCATATGAATGTTTTATTCTCACAAATAGTAATAAAATATCATTTGCCTGTTAACTTTAACTTGTACC
s caePb3.Scfld02_0      2016045 302 +  4147112 GTGTAAGTTCAACTAACTGAGAAAACATAAGCGATTGG------CATATCGAAGAACTTGCGAAAACTGATCGT---TTTTTGCTTATG----------------------AATTTTAGAGAAGagcttcttttcg------aaattataTGCTCGAAGATCTAGAAACTGCATTgtcttgaa-acaaaaaaccga------tttggccgtaaac-----tttgaaacttcgATTCAATCAATCCCAACCAGGATAAGTT-----------TGGTTTTGGACTTTTGAATT------CAAGCTCACACGTA-----TACATCCAGTTCCAAA----ATG---GTTATATT------AAAAACTATCAAATATC---------Ctaattctgagtt-----
i caePb3.Scfld02_0      I 148 C 0
s caeJap4.Scaffold18142   46823 354 +   343467 aaacaaatttagaaaccggtcaataagtaa-caattggaaaaatctaaccaaattatt---gaaaaaag--------tgttaaattcattcccatatgagaggggccggtttattttagggggccgctCAATTTTG---ggtagccgttctatt---------ataagggccgttctattagagaattaaCGGCAAGTATaattttgcagaatttttatGTCTGGGTGTTATTTTTAAGTTGCCTAAACTTTTACGATTCAATTGATTAAATGATCCAGgaacattatttt------ttaattctttatgaacttaaaaataattttcataa----------GCTTAATT------AAATTATACAGTACATTCCACGCCTCTCCGTCTTCCactgcgcc
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192  94 + 20921866 I
e caeRem4.Crem_Contig0   744502 111 -  4500979 I

a score=-12956.000000
s ce10.chrX             3616958  72 + 17718866 -----GTT--------------TAGGATTTCTCAC----AATGCATTTTA------------AATAATGATACAAAGTATTAACAAATGTTCCAAGAATTTTT---TTAT
s caeRem4.Crem_Contig0   744613  59 -  4500979 -----gtt--------------ttcagttttttct----ag--CACATTATT----------AATGGAGACactacttgtt----------------ttttttacataaA
i caeRem4.Crem_Contig0  I 111 I 9
s caePb3.Scfld02_0      2016347  53 +  4147112 ----------------------------tttctcT----GAGTCACTTCACTA------CAAAACAATCACAGtggtcatt----------------attttt---tcaa
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold18142   47177 100 +   343467 accaagttcgtcggataataaatttatttttcactcaaaaatttgtttttttgagaatttaaaATCATTAT-Ctaattatt-caggatgacaccatcatttt--------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8738612 101 + 21540570 I
e caeSp111.Scaffold630  5747192  94 + 20921866 I

a score=910.000000
s ce10.chrX             3617030 1 + 17718866 A
s caeRem4.Crem_Contig0   744681 1 -  4500979 A
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5747286 1 + 20921866 A
i caeSp111.Scaffold630  I 94 C 0
s caePb3.Scfld02_0      2016419 1 +  4147112 a
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18142   47277 1 +   343467 a
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8738612 101 + 21540570 I

a score=20412.000000
s ce10.chrX             3617031 37 + 17718866 ACTTACGAAAGAATCACATATGTTCTGAAAGG------CATTT
s cb4.chrX              8738713 37 + 21540570 ACTTACAAGAGGGGGACGTAAGTTTTTTGGGG------CATCG
i cb4.chrX              I 101 I 8
s caeRem4.Crem_Contig0   744682 37 -  4500979 ACTTACGAGAGAAGAACGTATGTTTTCAGAGG------CATTT
i caeRem4.Crem_Contig0  C 0 I 50
s caeSp111.Scaffold630  5747287 37 + 20921866 ACTTACGAAAGAAGGACGTATGTTTTCAGAGG------CATTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2016420 37 +  4147112 acttacgaaagAAGGACGTAGGTTTTCAGAGG------CATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   47278 42 +   343467 atttaaaaacgaggaattttggtcagaaaatgaccgatcctt-
i caeJap4.Scaffold18142 C 0 C 0

a score=-10841.000000
s ce10.chrX             3617068 26 + 17718866 ------GTGA----GAGTAAAA-AAA-------------------CGCGG-----GGTTCA----------------
s cb4.chrX              8738758 30 + 21540570 ------GTGA----GCGCGAAC-ACAAAC---------------TTGTGA-----CACGCC----------------
i cb4.chrX              I 8 I 7
s caeSp111.Scaffold630  5747324 40 + 20921866 ------GTGAATATGCGTGAACGACAGCC---------------TCGCGCACACATACACA----------------
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2016457 31 +  4147112 ------GTGAATATGCGTGAACGACA-------------------TGCGC-----CACACA----------------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   47320 72 +   343467 agggttttaaaaatgcgccaggtagaaacaattttggaaggttGGGGTTC-----CGTGCATTCTACTATTAAGAAA
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   744719 50 -  4500979 I

a score=246936.000000
s ce10.chrX             3617094 470 + 17718866  
s cb4.chrX              8738795 459 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   744769 453 -  4500979  
i caeRem4.Crem_Contig0  I 50 C 0
s caeSp111.Scaffold630  5747370 447 + 20921866  
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2016494 462 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142   47392 475 +   343467  
i caeJap4.Scaffold18142 C 0 I 1462

a score=-715.000000
s ce10.chrX             3617564 1 + 17718866 T
s cb4.chrX              8739254 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   745222 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5747817 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2016956 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 54
e caeJap4.Scaffold18142   47867 1462 +   343467 I

a score=2491.000000
s ce10.chrX             3617565 78 + 17718866 GCGGCGGAA-------------------AAATGACGATCAGTTGAAATAAATGAGTAGGAAGAAAAATGAGGGTGTATGCATGTGCCGTATAGGAAG
s cb4.chrX              8739255 78 + 21540570 GTGGCCGAGGTCCTCGGGAGGTCAATTCATGGGATGATGCTttgaaaaag-----cagaaaaaggGGGAGGA----------GCGCGGAC----AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   745223 81 -  4500979 GAAGGAGAGGTCTCCTGGAGGTCAATTCA-ACGTCGATcctttgaaaaag-----gaagaaaaagggtAAGG----------GTACCGCCTACGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5747818 71 + 20921866 GAGGCAGAGGTCTTTCGGAGGTCAATTCTAATGACGATCCGTTAAAATAT-------GGAATAGGGG-------------------CCTCTATAAAG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2016957 54 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I

a score=3572.000000
s ce10.chrX             3617643 57 + 17718866 TATGGAGTCACTGCA----------------TTTTAAAACTAGATAAAAAAGTTCAGTTTTAATTACTATCTC
s cb4.chrX              8739333 73 + 21540570 TAGAGGTACTccatgaaaagaaaaacgggAGTAGGAGAAAACGAAGACGGAGTTCactttcaattattttctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   745304 56 -  4500979 TCtcgattcttctt-----------------tttgcgcGGAGGAAGGGGGAGTTCACATTCAATTATTCTCTC
i caeRem4.Crem_Contig0  C 0 I 239
s caeSp111.Scaffold630  5747889 49 + 20921866 TCTCGATT-----------------------CATGCAGAGGGTAGAAGagagttcatttttaattattctcT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2017011 49 +  4147112 TATAGAGT-----------------------TActctttatgaaaaaaagagttcatttTTAATTGCTCTTC-
i caePb3.Scfld02_0      I 54 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I

a score=600.000000
s ce10.chrX             3617700 1 + 17718866 C
s cb4.chrX              8739406 1 + 21540570 c
i cb4.chrX              C 0 I 2802
s caeSp111.Scaffold630  5747938 1 + 20921866 C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2017060 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e caeRem4.Crem_Contig0   745360 239 -  4500979 I

a score=-73.000000
s ce10.chrX             3617701 34 + 17718866 CACTCTGACTTTTAAGTTTTCATTATTTTGTCAT--------
s caeSp111.Scaffold630  5747939 34 + 20921866 CATGCCTAGTTTGAAATTATAACTATAATGCCAT--------
i caeSp111.Scaffold630  C 0 I 131
s caePb3.Scfld02_0      2017061 36 +  4147112 CAT------CTCATAGTTATTGCTATATTACCAACGCCTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeRem4.Crem_Contig0   745360 239 -  4500979 I

a score=310.000000
s ce10.chrX             3617735 145 + 17718866 ATCGGAGAAAATATAGAAAATTCACATAGAAAATAAAAAATAATT--------------------GACTATGCACATCATCTTTTTTTAGGTTTGTTAAATTTAAAAAAATGTATTGTTTAAAAAAAATGCACTCAGAATGGTCTATCAAAGGTTTGGCAAATTG
s caePb3.Scfld02_0      2017097 149 +  4147112 CCCGAAGGAAGTATGAAAACatttaattgagaaaaacacatcatttaaaaaaaggaaagcgaaaaaagtaacaatattctttttgtttgttttttttcagtccaaa-------atagcacagaaaaatgaaacttaaaaaag-------aaacttca--aaattg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5747973 131 + 20921866 I
e caeRem4.Crem_Contig0   745360 239 -  4500979 I

a score=0.000000
s ce10.chrX             3617880 778 + 17718866  
e caePb3.Scfld02_0      2017246   0 +  4147112 C
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5747973 131 + 20921866 I
e caeRem4.Crem_Contig0   745360 239 -  4500979 I

a score=430.000000
s ce10.chrX             3618658 32 + 17718866 TGGAAACAACTGTTAA----------ATGTTTCTCATTTTTG
s caeRem4.Crem_Contig0   745599 42 -  4500979 TGAAAAGGGCTGTTAATTCAAGACAACTGTCCTCAACTTTTC
i caeRem4.Crem_Contig0  I 239 C 0
e caePb3.Scfld02_0      2017246  0 +  4147112 C
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5747973 131 + 20921866 I

a score=273.000000
s ce10.chrX             3618690 1 + 17718866 A
s caeRem4.Crem_Contig0   745641 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5748104 1 + 20921866 a
i caeSp111.Scaffold630  I 131 C 0
e caePb3.Scfld02_0      2017246 0 +  4147112 C
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I

a score=110591.000000
s ce10.chrX             3618691 511 + 17718866  
s caeRem4.Crem_Contig0   745642 506 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 227
s caeSp111.Scaffold630  5748105 479 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2017246 479 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I

a score=2497.000000
s ce10.chrX             3619202 42 + 17718866 AAGTGTCAAACGTTTTTTCACAAGAAATTGGATATCAGTGCA
s caeSp111.Scaffold630  5748584 39 + 20921866 TATCAACAAA---GTTTCAATGAGAGATCGAATGTCAGTTCA
i caeSp111.Scaffold630  C 0 I 193
s caePb3.Scfld02_0      2017725 38 +  4147112 aatcGAGAAA----TTTCAACAACACATCGGACCTTAGTGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeRem4.Crem_Contig0   746148 227 -  4500979 I

a score=761.000000
s ce10.chrX             3619244 25 + 17718866 GGATAT----TTTTTGACATTTTTGAAAA
s caePb3.Scfld02_0      2017763 29 +  4147112 aaagatcttcttcttcacatttttcaaaa
i caePb3.Scfld02_0      C 0 I 2796
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748623 193 + 20921866 I
e caeRem4.Crem_Contig0   746148 227 -  4500979 I

a score=0.000000
s ce10.chrX             3619269 535 + 17718866  
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748623 193 + 20921866 I
e caeRem4.Crem_Contig0   746148 227 -  4500979 I

a score=420.000000
s ce10.chrX             3619804 15 + 17718866 CTGACTAGTAACGTG
s caeRem4.Crem_Contig0   746375 15 -  4500979 cCAACGAAAACCGTG
i caeRem4.Crem_Contig0  I 227 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748623 193 + 20921866 I

a score=10761.000000
s ce10.chrX             3619819 160 + 17718866 ACATGTCATTGCACTTTGTCATACAATACAGAGGTAACTTGATCTTGCTCAA-----------GGAGGTCATGTAGATGGAAAAATTGTAGACGGAAAAAAGAAAGAAATCAAAAAACGGTTGAGATATAGTT-GTCCAA--CATTTCATCGTTGATATTGAACAGCTGTCGTC
s caeRem4.Crem_Contig0   746390 152 -  4500979 ACATGTCACTGCACTTTGTCATGCAATCAGAATGTAACAtgatctttcagaaaaaaaatgttgggaGGTCATATAGATG--------------aggggaaaaaaagaaatcaaaaaacggtGGTTTTAGACGTCCTCCAACTCATTTGA--------AGTGAACAGTTGTCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5748816 143 + 20921866 ACGTGTCCAAGCACTATGTCATGCAATCAGAATGTAACATGATCTTTTTCAGAGAGGGTCTTGGTAGGTCacaaagac-----------------------aaaaaagtgcGAGAAACAGTTGTggttgaaat--ttgaaattactTCAT------TATAGAACAGCTgtcctc
i caeSp111.Scaffold630  I 193 I 348
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I

a score=1055.000000
s ce10.chrX             3619979 50 + 17718866 GCTGTGTGTATGAAGTGTAGTTGAAACTTAGGTTGAATGTTTGCTAAAAT
s caeRem4.Crem_Contig0   746542 48 -  4500979 A--AAGTATATAGAGTGCATATGAAATTTACACTATAGGTTTGCAataat
i caeRem4.Crem_Contig0  C 0 I 525
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748959 348 + 20921866 I

a score=0.000000
s ce10.chrX             3620029 1542 + 17718866  
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   47867 1462 +   343467 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748959  348 + 20921866 I
e caeRem4.Crem_Contig0   746590  525 -  4500979 I

a score=91.000000
s ce10.chrX             3621571 1 + 17718866 T
s caeJap4.Scaffold18142   49329 1 +   343467 t
i caeJap4.Scaffold18142 I 1462 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5748959 348 + 20921866 I
e caeRem4.Crem_Contig0   746590 525 -  4500979 I

a score=545.000000
s ce10.chrX             3621572 5 + 17718866 TTTTT
s caeSp111.Scaffold630  5749307 5 + 20921866 tTGTG
i caeSp111.Scaffold630  I 348 C 0
s caeJap4.Scaffold18142   49330 5 +   343467 ttttt
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeRem4.Crem_Contig0   746590 525 -  4500979 I

a score=18660.000000
s ce10.chrX             3621577 223 + 17718866 AATAATTGATGATTGGGTGCGAATAGTCTGA---TAGTGGGGCAAACT----TATCACCTGACATAAAATTCCTCACACTCTCCAACCCACATGATAAATCGCTGGTCCTCTTTTTTCGACAGATTG-----------------------GAGTTT---GAATGCGTGATCGGATGTAGGTGAAGAGATGGAACTCATT--GAGAAAAGTTTC----------TCTTTTTATTTTGCTCAATCTATACTTATATCGACCACACATACA
s caeRem4.Crem_Contig0   747115 237 -  4500979 AATAATTTATGA----GTTGAGATA----AAAGTAAGTGGAGCAAACT----TATCACCTGACAATAGATTCCTCACACTCTTTA-CCCACATGATAAATCGCTGGTCCTCT-TTTTCGACAGATTGAGGGCCTGATC---------GTAGTATTT---CTATGTGTAATGAAACAGAGGAGAACTAATTGAA-TGATT--GAACGGAAATTTGTTGCAAACGTTTACCCAATCACCTCCTCCCACACTT--TTAGACCTCAGGCatt
i caeRem4.Crem_Contig0  I 525 I 17
s caeSp111.Scaffold630  5749312 227 + 20921866 AATAATTGATGG-------GGGATAGTCTGAAGTAAGTGGTGCAAACT----TATCACCTGACATCAGATTCCTCACACTCTATATCCCTCATGATAAATTGCTGGTCCCCTACTTGCGACAGATTGAGTCCCTGATC---------GGCGAATTT---CAATGtgtaatgaaaaaaagaa----taattga---------GAACTAAACTGCTCGGCAAGCttttttttATCGGGCTAT-----CATTTAATGAGACCACacaaata
i caeSp111.Scaffold630  C 0 I 75
s caeJap4.Scaffold18142   49335 257 +   343467 gatGATtggtgg--tagtggtgatggt--ggtggtggtgggggACTTTGTGCTATCACCTGACATCAGATTCTTCACACTCTAT--CCCACATGATAAATCGTTGGGTATCT--TTTCGACAGATTGAGTTTTCAATCAGTTTGGGAGTGAGGTTTTTGCTCTGtgtaaaaaatcgataagaaCGGGAGTGGATTCtttaataaaacaattttttgttatttcttttttttttaagttgggttttttttt--ttcaattttattgga-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8739407 2802 + 21540570 I

a score=-244.000000
s ce10.chrX             3621800 67 + 17718866 TCATCCCCTTTTTTGTT---GTGAGAAAAAATATGTCAATCTTCGTAGAGATTGAACTTAGTAGAT--AAGT
s caeRem4.Crem_Contig0   747369 68 -  4500979 CTAATCCGGtctttgtttcagaaaacaaaaaccgaCCAATTAATTTACAGATTGAATTGAGCAGAT--AA--
i caeRem4.Crem_Contig0  I 17 C 0
s caeJap4.Scaffold18142   49592 56 +   343467 TCCCTCCAGTTTTTGCC-------------ATCTAAC-TTTAATCTAGTAATTAAGATAATCAGATTAAA--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8739407 2802 + 21540570 I
e caeSp111.Scaffold630  5749539 75 + 20921866 I

a score=-8262.000000
s ce10.chrX             3621867  68 + 17718866 ATTGTTGCAAGGATT------TTCTACATGATTT------------------TTCTAAATAAATTC--------ACAACAAAAACA---ATTTTTTCTTATGC
s caeRem4.Crem_Contig0   747437 103 -  4500979 ATTGTTGcgattttccaaatttttttccgggTTCGTTTTCAGTTCAGAAGTGATCTATGGAGATCCGATCTGTTGTGatacaaacaaaattttgttctTAATT
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold630  5749614  78 + 20921866 ACTGTTTCCGGGTTTCAA---TTTTATCTGattagtttttagttt-------ttccgTATAAATC---------ATTCTAAAAACG------TCTTCTCAAGT
i caeSp111.Scaffold630  I 75 I 39
s caeJap4.Scaffold18142   49648  59 +   343467 ------------------------------------AATCAATCTAG-----CTATTTAAAAATGGGAAAC---GCGACAAAAAGATAATTCAATTCAATAAC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8739407 2802 + 21540570 I

a score=163088.000000
s ce10.chrX             3621935 776 + 17718866  
s cb4.chrX              8742209 786 + 21540570  
i cb4.chrX              I 2802 C 0
s caeRem4.Crem_Contig0   747579 789 -  4500979  
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  5749731 783 + 20921866  
i caeSp111.Scaffold630  I 39 C 0
s caeJap4.Scaffold18142   49707 844 +   343467  
i caeJap4.Scaffold18142 C 0 I 255
e caePb3.Scfld02_0      2017792 2796 +  4147112 I

a score=5482.000000
s ce10.chrX             3622711 60 + 17718866 CTTTCTATCCTTTCGTTTCGAGTGATTTGTCCTTTTTGTC-------------TCCAAAAACATAGAACGAAA-
s cb4.chrX              8742995 56 + 21540570 CTTT--------GAGTTCCGAGTCATTTGTCCTTTTTTGTCACC---------GCCAAAAAGCCAACACTGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   748368 59 -  4500979 CTTTTACTCC-AGAGCTTCGAGtgatttgttctttttttt-------------gcacaaaaacaCATATGAAA-
i caeRem4.Crem_Contig0  C 0 I 147
s caeSp111.Scaffold630  5750514 73 + 20921866 ctttttatcc-ttttttccaagtgatttgtcctttttttcctttctttgtctatccaaaaaacaaagaacacAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I

a score=-99.000000
s ce10.chrX             3622771 2 + 17718866 AA
s cb4.chrX              8743051 2 + 21540570 GC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5750587 2 + 20921866 GA
i caeSp111.Scaffold630  C 0 I 82
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I
e caeRem4.Crem_Contig0   748427 147 -  4500979 I

a score=315.000000
s ce10.chrX             3622773 17 + 17718866 TTTCAAAAGATTTGGGA
s cb4.chrX              8743053 17 + 21540570 AAAGAACCGATTTGgga
i cb4.chrX              C 0 I 154
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I
e caeSp111.Scaffold630  5750589 82 + 20921866 I
e caeRem4.Crem_Contig0   748427 147 -  4500979 I

a score=0.000000
s ce10.chrX             3622790 875 + 17718866  
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I
e cb4.chrX              8743070 154 + 21540570 I
e caeSp111.Scaffold630  5750589  82 + 20921866 I
e caeRem4.Crem_Contig0   748427 147 -  4500979 I

a score=44.000000
s ce10.chrX             3623665 48 + 17718866 CATTTCT----AGAATGGAGAACAACTCTACGATTTTTGTGCGAGA---TTAACC
s caeSp111.Scaffold630  5750671 54 + 20921866 CATTTTTGTAGAGAACGtacaaaaacttt-taatcCTCGCACAAAAATCGTATTG
i caeSp111.Scaffold630  I 82 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I
e cb4.chrX              8743070 154 + 21540570 I
e caeRem4.Crem_Contig0   748427 147 -  4500979 I

a score=207.000000
s ce10.chrX             3623713 1 + 17718866 G
s cb4.chrX              8743224 1 + 21540570 G
i cb4.chrX              I 154 C 0
s caeRem4.Crem_Contig0   748574 1 -  4500979 g
i caeRem4.Crem_Contig0  I 147 C 0
s caeSp111.Scaffold630  5750725 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   50551 255 +   343467 I

a score=122239.000000
s ce10.chrX             3623714 419 + 17718866 AGATCGCTTCACGTGGGTGACAGATTTATCCGCCCGCATATTCATTCAAAATTGTACCTGATCAC--AGTAGATCAATACCAAAA-AAGAGATTA--AACTACTTTCAAAGAACGCATCTCT-CCGCCTTCA--TGAAAG------------------TACCATTTCATT---------------TCATTG--TTCGCAAATTTTCATTCACAAAATTATC-GCGTTTGAAA-ATGACCAATATTGTTCCGAGAATACTTGGTTTTGTCCTATTTGTACTAGGAGCTGCTATTTTTTTGACGGAAGTCATGCATTCTTATCATCGATTTGTGAAACAATCCGAGGAATATTCAATATCTAACTCGAATACCGACGATGCTCCAACGAAGAAAAAACAGATGAAGGCATTTTTCAGTTTATACCACAATATGGATGAACTAAAAGCGCAAAACAGTGACGTAAGT
s cb4.chrX              8743225 411 + 21540570 GGGTTGCTTCACGTGGGTGAAAGATTTATCGGCCGTTTTGTCCATTCATAATTGTACCTGATCTC--AATAGATCAATACCAAAA-ATGGGATTA--AACTACTTTCAAAGAGCGTTTTGGTAACGCCCACT--GGAGAA------------------TTCGGaatgaaatac-----------------------tgaaattcttcaCTACTCCCAGACCTGC-----AAGAATGACCCATCTAGTGCCTAGAATACTGGGCTTTGTGTTATTTGTACTAGGTGCTGCAATTCTTTTAACGGAAGTCATGCATTCTTATACTCGCTATATTAGGCAATCAGAAACATATACTGTGACAAGTGGAGATTCACAGGATCCACCGAAAAAGCAGAAAcagctgaaaacattttttagtcTCTACCGAAATATGGATGAGATTATTGAGCAAAACACTGATGTGAgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   748575 409 -  4500979 agACTGCTTCACGTGAGTGACCGATTTAACGGCCTACTATTTCATTCATAATTGTACCTGATCTC--GATAGATCAATGCCAAAA-AACGGATTG--AACTATTTTCAAAGAGCGTTTAGCT-CCGCCTCCT--TAGAAC------------------TACTCGATAAAA-ACGG----------TCA--G---TATGCACTGTTCTATTTCTCATTGATC-AC-----AAG-ATGACTCAATTATTGCCTAGAATTCTAGGATTTGTTTTATTCGTTTTAGGAGCTGCTATATTTCTTACTGAAGTTATGCATTCTTATCAAAGATTTGTTAGACAAGCAGAAGAGTACCCTATATCAAACAGTG------AAGATgttccaaaaaaggaaaagcaGATGAAGACGTTTTTCAGTCTCTACAATAATATGGATGAAATCTTTGGTCAGAACAGTGATGTAagt
i caeRem4.Crem_Contig0  C 0 I 235
s caeSp111.Scaffold630  5750726 420 + 20921866 AGACTGCTTCACGTGGGTGACAGATTCAACAACGGTATGTTTCATTCATAATTGTACCCGATCTC--GATAGATCAATACCAAAA-AACGGATTA--GACTACCTTCAAAGAGCGTTTCGAA-CCGCCTACTCCTAGAAA------------------AACTGTGTTAAA-ATAGAT--------TCa--g--ttctgatttttttgtctactggttgatc-aa-----aaa-atgaattaccTGCTACCTAGAATACTAGGTTTTATACTATTTGTCTTAGGAGCTGCTATATTCTTTACTGAAGTAATGCATTCATATCAACGATTTGTTAGACAATCAGAAGAGTACCCAATTTCAAATGGAGATATGCAAGATGCtccgaaaaaaccaaaacagATGAAGACATTCTTCAGTTTATATCATAACATGGACGAGATATTGGAGCAAAATAGTGATGTAAGA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   50806 436 +   343467 AGGGTGCTTCACGTGGGTGACAAATACATACTGTTTCATTCTCATTCAGAATTGTACCTGATCTCGAGACAGATCATTGTCAAACTGGCGGATTAATATATACCTTCAAAGAGCGTTTGGC--CCGCCCACA--GAGCAAAAgtttaatttgttttgtttcttattAACT-GCTACTCTTTCTGGTCATTggttttgtgcatttttttttgctg--tggCC-AC-----A---ATGACTTATATTCTACCCAAAATTCTATTTGCAATTTTATGTCTTCTACTGTTTGCTATATTCTTCAATGAAATTATGCATTCTTATACTGTATTCGAGAAACGTTCTGAAATGTTTTCCTTATCGAATA------------ACATATCaaagaaaggaaaggaaacaaaaatgtattttagtcTTTATCGAAATATGGAAGATATCATTAAGCAAAACAACCATGTGAGT
i caeJap4.Scaffold18142 I 255 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I

a score=180.000000
s ce10.chrX             3624133 1 + 17718866 T
s cb4.chrX              8743636 1 + 21540570 c
i cb4.chrX              C 0 I 84
s caeSp111.Scaffold630  5751146 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   51242 1 +   343467 T
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=161.000000
s ce10.chrX             3624134 5 + 17718866 TTAGA
s caeSp111.Scaffold630  5751147 5 + 20921866 TTTAT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   51243 5 +   343467 ttcga
i caeJap4.Scaffold18142 C 0 I 1245
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8743637 84 + 21540570 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=550.000000
s ce10.chrX             3624139 99 + 17718866 TTTGAATTTTGGGAAGCTGTTCTTTCAATAATGTGTTGGGTAGA---AGCCGTATCAAAAAGTGAACATTTCTAAACACGGAAGTTCAATTTTTTTATTATT
s caeSp111.Scaffold630  5751152 84 + 20921866 TTCAAGGTTTAAAACCATTGTCTTTAAGTTATTTTCTCACTAAATTTAgccg----aaaaatt----atttcta-------gagt---agttttttattatt
i caeSp111.Scaffold630  C 0 I 30
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   51248 1245 +   343467 I
e cb4.chrX              8743637 84 + 21540570 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=0.000000
s ce10.chrX             3624238 13 + 17718866 GCATAGGTTTAGA
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   51248 1245 +   343467 I
e cb4.chrX              8743637 84 + 21540570 I
e caeSp111.Scaffold630  5751236 30 + 20921866 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=-5525.000000
s ce10.chrX             3624251 714 + 17718866  
s cb4.chrX              8743721 455 + 21540570  
i cb4.chrX              I 84 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeJap4.Scaffold18142   51248 1245 +   343467 I
e caeSp111.Scaffold630  5751236  30 + 20921866 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=-4104.000000
s ce10.chrX             3624965 123 + 17718866 AATAATTGAAACATTA------TTAAGTTTTTGAGCAACTGCTTTCACTTCCAATTGTTTGACCTAACTATTTTACAGACACCCAATACATTTGTTTTTCAAAACGCTCTTCAAATATATTATAGGCAC
s cb4.chrX              8744176  75 + 21540570 ------------------------------------------ttctaCTTTCCAT-------CTTCACTTTCT--CAGGCAAAAAACAC---TGTTTCCTTAAAATATGTTCAAATTCATTTCACtctt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   52493  90 +   343467 AATGAAGGAAAAATTACGTCGcttaaattttggaaaaacaattttcagtttcCCC--------------------CGGGCTTTAATCat---tattttccta-----tttttcagcAC-----------
i caeJap4.Scaffold18142 I 1245 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e caeSp111.Scaffold630  5751236  30 + 20921866 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=91.000000
s ce10.chrX             3625088 1 + 17718866 A
s caeJap4.Scaffold18142   52583 1 +   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I
e cb4.chrX              8744251 0 + 21540570 C
e caeSp111.Scaffold630  5751236 30 + 20921866 I
e caeRem4.Crem_Contig0   748984 235 -  4500979 I

a score=56753.000000
s ce10.chrX             3625089 131 + 17718866 TTTCAGGTAGTTCAACCACGTGTTTTAAAAGGAACCGCTCGAGAGTTTTGCAACAACACAGATCACTGTATTCGCCCATTTTTAAACCATGAGACCAGATATCGAGTGAG------ACACCAATGCAAAGATCATAA
s cb4.chrX              8744251 137 + 21540570 tttcagacaatccAACCTAGAGTTCTAAACGGATCAGCCCACGAGTTTTGCAACAACACAGATCACTGTATTCGACCGTTTATGCGCCACGAGACTAGATACAGAGTGAGAACAAAACACTACGACAAAGATCACAA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   749219 130 -  4500979 TTTCAGATTATACCTCCGCGTGTTCTCAACAGTACTGCACATGAATTCTGCAACAACACAGATCATTGCATCCGACCTTTCATGCGCCATGAAACTAGATATAGGGTGAG------ACA-TACCGTAAAGATCACAA
i caeRem4.Crem_Contig0  I 235 I 7
s caeSp111.Scaffold630  5751266 129 + 20921866 TTCTAGGTTATTCAACCGCGAGTACTGAATGGTTCCGCTCACAACTTTTGCAACAACACAGATCATTGCATTCGTCCATTCATGCGGCATGAGACCAGATATAGGGTGAG------AC--TACCGCAGAGATCACAA
i caeSp111.Scaffold630  I 30 I 6
s caeJap4.Scaffold18142   52584 120 +   343467 TTCCA-------CAATTGCGAACACTTAACGGTACGGCTCACGAAATTTGTAACAACACAGATCACTGTATTCGACCATTTATCCGCCACGAGACTAGATACAGAGTAGG--GAAAATA-------AAAGATCTCG-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2017792 2796 +  4147112 I

a score=79375.000000
s ce10.chrX             3625220 111 + 17718866 TTCTAACTTTTATGTTAAAGGTCGCGCCGGATTACAAAATGGCCCACTGTGTAGTTCACAAGAGTATGTCTACGGTTATAACCGGGATCTGGTGTTATTTGTTCAATAGAA
s cb4.chrX              8744393 103 + 21540570 TTCTCAATTT-------AAGGTCGCGCCGGATTATAAAATGGCTCACTGTGT-GTTCACAAAAGTATGTCTACAGTCATTACAGGTATTATGTGCTACTTGTACAATCGAA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   749356 111 -  4500979 ttaacaagttttttgtaaaggTCGCGCCGGATTATAAAATGGCCCACTGTGTAGTTCACAAAAGTATGTCTACAGTCATTACGGGAATAATGTGTTATTTATACAATAGGG
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5751401 111 + 20921866 TCGAAAATCGTTTGTTAAAGGTCGCGCCGGATTACAAAATGGCACACTGCGTGGTCCACAAGAGtatgtctacagtaatcacgGGAATTATGTGTTACTTATATAATAGAA
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2020588 111 +  4147112 TTCTAACTGTTTTATCTCAGGTGTCTCCACAGTACAAAATGGTGAATTGTGTAGTTCAAAAGTCCATGTCCACTATGATGACAGGTACAATGTGTTACCTCTACAACGAAA
i caePb3.Scfld02_0      I 2796 I 73
s caeJap4.Scaffold18142   52704 110 +   343467 -TTCAACTTTTTGTGTGTAGGTTGCGCCGGATTACAAAATGACACATTGTGTAGTCCACAAGAGTATGTCTACAGTAATCACAGGAATAATGTGTTACCTGTTCAATAGGA
i caeJap4.Scaffold18142 C 0 C 0

a score=31425.000000
s ce10.chrX             3625331 103 + 17718866 ACCGTTTTGTGAGAGTCGATAAGCAAATGAACATGTCCGAATGGGATAAAGAATCGTGAGTGA--GGGAGCAAAGATTGAAGATTTGAAGATTGTTTAAGAGTGA
s cb4.chrX              8744496  63 + 21540570 ATTACTATTTGAAAGTTGACAAGCAGATGAACATGTCAGAGTGGGATAAAGCTGCgtgagttt------------------------------------------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   749467 102 -  4500979 ACCACTTTGTGAAGGTTGACAAGCAAATGAACATGTCGGAATGGGATAAAGCATCgtgagttttttggaattgaga---AAGATTAAAGAATGACTTGTAAAAGC
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5751512  94 + 20921866 ATCATTTTGTAAAAGTTGACAAGCAAATGAATATGTCTGAATGGGATAAAGCATCGTGAGtat--------taaaa---taaaactagAGATTAGTTGTGAGAGA
i caeSp111.Scaffold630  C 0 I 10
s caeJap4.Scaffold18142   52814  93 +   343467 ATCGATTTGTGAAAGTCGATAAGCAAGCAAACATGTCAGAATGGGATAAGGCGGCGtgagtta---------aaaa---aatattttgaaagcatcagaaaaaga
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2020699  73 +  4147112 I

a score=96501.000000
s ce10.chrX             3625434 219 + 17718866 AAAA-------------CTATTT-------------AAAAATTTAAGGCTCTGCCGAGGCGACAACACATTTCGTCATTTGAAGAGTCTTCAGAAAAAATATAATG---CGAGTGAAATGACTGGATGGAGTTTGTCAATGATAACACGAGATCCCATTGACAGATTCATATCGGGTTATGTGGATAGATGCATAAGGTTCGTCTAAAAG---TCCAAGTCCACAACAACTTCTTCCCCCATCAACTACCC
s cb4.chrX              8744564 225 + 21540570 acaatgtCGCCGGGAGTGTATTC-------CTACTATAAAATTTAAGACTATGCCGAGGGGACAACACATTTCGACACTTGAaaagtcttcaaaaaaagtacaaTG---TTAGTCAAACGGGTGGATGGAGTTATTCAATGATTACCCGCGACCCCATTGACAGATTCGTATCGGGTTATGTGGATAGATGTATAAGGTTTGTTTAAAAG---TCCAAA-------------ATGCCCCCATCTTCAAACT
i cb4.chrX              I 5 I 4
s caeRem4.Crem_Contig0   749574 219 -  4500979 ACAA-----CAGCTATTCTATTCTGGTTTTCTACTATAAAATTTAAGACTATGCCGAGGAGACAACACATTCCGACACTTGAGAAGTGTTGAAAAAAGGTTCAATG---CGAGTGAAATGGACGGATGGAGTTTGTCAATGATTACACGAGACCCCATCGACAGATTTGTATCTGGTTATGTGGATAGATGCATAAGGTTTGTTTAAAAG---TCCAa-----------------ctctcgtttt----ct
i caeRem4.Crem_Contig0  I 5 I 4
s caeSp111.Scaffold630  5751616 210 + 20921866 ACAA--------TTGCTCTGTTT------TCTACTATAAATTTTAAGACTATGCCGAGGGGACAACACATTTCGCCATTTGAAGAGTCTTCAAAGAAAGTACAATG---CCAGTGAAATGGACGGATGGAGTTTGTCAATGATTACACGAGATCCCATTGACAGATTCGTATCGGGTTATGTGGATAGATGCATAAGGTTTGTTTTGAGAAGTTTCAA-----------------AACCCACTC-------
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2020772 194 +  4147112 aaaa-------------ctgttt------tcag---------ttCAGGTTTTGCAAAGACAAAAATGAGTTCCACAGTGTTAACGATGTCCGTGATGCATTTAACATATCCTATGTAAAAACAGATTggagtttttcaatgataacGAGAGATCCTATCGATAGATTTGTTTCTGGTTATGTGGACAGATGTGTTAGGTGAGATTGAAAA-----CAA-----------------CCATCATCC-------
i caePb3.Scfld02_0      I 73 T 2994
s caeJap4.Scaffold18142   52907 202 +   343467 -------------------------aagatttac--GGAAAGTTTAGATTGTGTCGAGGAGAGAACACTTATCGATATTTGAGACACGTTCAAAACAAGTACAATG---CAAGTACAACAAATGGATGGAGCTATTCTATGATTACTCGCGATCCCATCGACAGATTCATATCGGGCTATGTGGATAGATGCATAaggttcttcttcttc---ttctt---------tttattcttcttcactt-------
i caeJap4.Scaffold18142 C 0 C 0

a score=1476.000000
s ce10.chrX             3625653 3 + 17718866 TCT
s cb4.chrX              8744793 3 + 21540570 TCT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   749797 3 -  4500979 tct
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5751826 3 + 20921866 TTT
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   53109 3 +   343467 tcG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2020966 2994 +  4147112 T

a score=188833.000000
s ce10.chrX             3625656 211 + 17718866 -CACCCC----------TCTTTACTT---TTTCTTCTTATTGTCAC-ATTGCAGAGTGGCTGAGGGACCGAGTCCGTGCAACGGATGCGATAAGAATATGACATGCTTCATTTTGAGCGAGTATGAAAGATTCAAAAAGCAAGCCCACAAAGGGGTTCTCACAAACACTTTTGAGGATCGACACTTTTATCCGCAGAATTGGTGAGAG---------------GAAGACTATTGAATTATT
s cb4.chrX              8744796 213 + 21540570 ---------------------CAC------TTCCTTTTATTGTGTC-ATTGCAGAGTGGCGGAAGGGTCCAGTCCGTGCAATGGGTGCGATAAGAATATGACATGCTTCATTTTGAGCGAGTATGAGAGATTCAAAAAGCAAGCCATCAAAGGGGTTCTCACAAACACTTTTGAAGATCGACACTTTTATCCGCAAAACTGGTGAGACGAATACTAAAAGGAAGGATTCTCGTGAATTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   749800 205 -  4500979 ---------------------cgcCG---TTTCACTATATTGTGAC-ATTGCAGAGTGGCGGAAGGACCAAGTCCATGCAATGGGTGCGATAAGAATATGACATGCTTCATTTTGAGCGAGTatgaaagattcaaaaagcAAGCCAACAAAGGGGTTCTCACAAACACTTTCGAGGATCGACACTTTTATCCGCAGAATTGGTGAGAAGACT-----------GGAGGCTCGTAAATTATt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5751829 207 + 20921866 -CCCCCC----------TCCTTAC------TCCTCTCCATTGTGAC-ATTGCAGAGTGGCGGAAGGACCAAGTCCATGCAATGGGTGCGATAAGAATATGACATGCTTCATTTTGAGCGAGTAtgaaagattcaaaaagcAAGCCACCAAAGGGGTTCTCACAAATACTTTTGAGGATCGACACTTTTATCCGCAGAATTGGTGAGA----------------GAAGACTTGTGAATTATt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2017972 197 +  4147112 -GCTCTC----------TCTTTTC------TACTCTCTATTGTGAC-A-TGCAGAGT---GCGAAGTCCCAGTCCATGCAATGGGTGCGATAAG-ATATGACATGCTTCATTTTGAGCGAGTatgaaagattcaaaaagcaAGCCACCAAAGGGGTTCTCACAAACACTTTTGAGGATCGACACTTTTATCCGCAGAATTGGTG---------------------AGACTCGTGAATTATT
i caePb3.Scfld02_0      T 2994 C 0
s caeJap4.Scaffold18142   53112 220 +   343467 TGCCCCTAAAAACGAAATCGACGCCGAATTCTCATCTCATTGTCCCTATTGCAGAGTAGCAGAGGGTCCGAGTCCATGCAATGGGTGCGATAAGAATATGACATGCTTTATATTGAGCGAGTATGAAAGATTCAAAAAGCAAGCAGTCAAGGGGGTTCTCACAAACACTTTTGAGGATCGACACTTTTATCCACAGAATTGGTG---------------------AGACTTatgaattatt
i caeJap4.Scaffold18142 C 0 I 87

a score=5697.000000
s ce10.chrX             3625867 30 + 17718866 AAGA-TTCTCGCGTTTTTC-------TGAATGATACCC
s cb4.chrX              8745009 37 + 21540570 gaga-ttctctttttttttttgttggtggATGATATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   750005 29 -  4500979 gaga-ttcttcttttttt--------tgcctCATATTC
i caeRem4.Crem_Contig0  C 0 I 156
s caeSp111.Scaffold630  5752036 29 + 20921866 gata-gttttctttttgt--------ttgatgATACCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2018169 30 +  4147112 GAAACACttggtttttgt--------ttgatgATACCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   53332 87 +   343467 I

a score=-698.000000
s ce10.chrX             3625897 19 + 17718866 ACAACAAAGAAA----AGGGTAA
s cb4.chrX              8745046 19 + 21540570 ---ACTT-CACGCTTTgggacaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5752065 16 + 20921866 ---ACGTAGAAA----AGGTCAA
i caeSp111.Scaffold630  C 0 I 58
s caePb3.Scfld02_0      2018199 15 +  4147112 ---ACAT-GAGA----GGGAAAA
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18142   53332 87 +   343467 I
e caeRem4.Crem_Contig0   750034 156 -  4500979 I

a score=932.000000
s ce10.chrX             3625916 10 + 17718866 AAACGTCAAA
s cb4.chrX              8745065  9 + 21540570 -aaaatgaga
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2018217 10 +  4147112 agacatcaaa
i caePb3.Scfld02_0      I 3 I 246
e caeJap4.Scaffold18142   53332 87 +   343467 I
e caeSp111.Scaffold630  5752081 58 + 20921866 I
e caeRem4.Crem_Contig0   750034 156 -  4500979 I

a score=1373.000000
s ce10.chrX             3625926 56 + 17718866 GAAACTTTTTGTGTGGAAGGGTTTGTCGTAAAAAATCAAAAAACGCGAAAAGTTTT
s cb4.chrX              8745074 56 + 21540570 gaaagatTTAAAATGAAGGAATATAATCTAAAGAATCAAGGAACTCTAAACGGCTT
i cb4.chrX              C 0 I 897
e caePb3.Scfld02_0      2018227 246 +  4147112 I
e caeJap4.Scaffold18142   53332 87 +   343467 I
e caeSp111.Scaffold630  5752081 58 + 20921866 I
e caeRem4.Crem_Contig0   750034 156 -  4500979 I

a score=0.000000
s ce10.chrX             3625982 1194 + 17718866  
e caePb3.Scfld02_0      2018227  246 +  4147112 I
e caeJap4.Scaffold18142   53332   87 +   343467 I
e cb4.chrX              8745130  897 + 21540570 I
e caeSp111.Scaffold630  5752081   58 + 20921866 I
e caeRem4.Crem_Contig0   750034  156 -  4500979 I

a score=749.000000
s ce10.chrX             3627176 84 + 17718866 TTCTCAAATTAAAAATAAAAATATCAT--TTGAATAT-AATACACCTAGAGTAAGACTCTGATTTTTCTATAAAATTACAAAAAAAA
s caeSp111.Scaffold630  5752139 83 + 20921866 ttctcgaatttcaaatcagAATGTTCTGATGAAGCATGAATATAGTTAAAAT----CTTTAATGCTTCTTCAATATGAACCTCAACA
i caeSp111.Scaffold630  I 58 C 0
e caePb3.Scfld02_0      2018227 246 +  4147112 I
e caeJap4.Scaffold18142   53332 87 +   343467 I
e cb4.chrX              8745130 897 + 21540570 I
e caeRem4.Crem_Contig0   750034 156 -  4500979 I

a score=-333.000000
s ce10.chrX             3627260 19 + 17718866 TTTCAAAATAACAACGTAC
s caeSp111.Scaffold630  5752222 18 + 20921866 -CTCTATATCAAAGCTGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2018473 15 +  4147112 TTTCAACATT----CTGAT
i caePb3.Scfld02_0      I 246 C 0
e caeJap4.Scaffold18142   53332 87 +   343467 I
e cb4.chrX              8745130 897 + 21540570 I
e caeRem4.Crem_Contig0   750034 156 -  4500979 I

a score=188.000000
s ce10.chrX             3627279 2 + 17718866 AA
s caeRem4.Crem_Contig0   750190 1 -  4500979 -A
i caeRem4.Crem_Contig0  I 156 C 0
s caeSp111.Scaffold630  5752240 2 + 20921866 TA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2018488 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   53332 87 +   343467 I
e cb4.chrX              8745130 897 + 21540570 I

a score=910.000000
s ce10.chrX             3627281 1 + 17718866 A
s caeRem4.Crem_Contig0   750191 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5752242 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      2018490 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   53419 1 +   343467 A
i caeJap4.Scaffold18142 I 87 C 0
e cb4.chrX              8745130 897 + 21540570 I

a score=148815.000000
s ce10.chrX             3627282 203 + 17718866 TTTTCC-----AGGAGATGTGATATCAAGACAATGCGAAATAAATATGAATTTATCAGATATTCAAGTGATGCATCGAAAGAACTCATGGAAGACTTATTCAAAATTGCTAGACGTCAAGGGGTGAGTGAG-GTTGAAAAT----------ACCGGCCGG---CTCATTAAAGTTATGAAAATAGTTTGTTTTGGAACACAAGCCGTGATGAAGCCACTTTT
s cb4.chrX              8746027 196 + 21540570 TTTTTC-----AGGAGATGTGATATTAGATCAATGAGGCACAAATACGAATTCATCCGATATTCCAGTGACCCATCTCAACAACTTATGGAGGACTTGTTCAAAATTGCCCGACGTCAAGGGGTTAGTTTC-TTTAAAA--------------GCAGCTA---CTCATTAAA---AGCAAAATGGATTGTTTTGGAACATAAACAATCATGAAGCCACTTTT
i cb4.chrX              I 897 C 0
s caeRem4.Crem_Contig0   750193 200 -  4500979 TGTTTC-----AGGAGATGTGATATTAAGACGATGAGAAACAAATACGAGTTCATCAGGTATTCCAGTGATCCATCAAAACAACTCATGGAAGACTTATTCAAAATTGCACGACGTCAGGGGGTAAGTATC-TTCGAAAA-----------ACACACAGA---CTCATTAAAG--GGGAAAAATGATTGTTTTGGAACACAAACTATCATGAAGCTACTTTT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5752253 193 + 20921866 TATTAT-----AGGAGATGTGATATCAAAACGATGAGAGACAAATATGAGTTCATCCGGTACTCCAGTGATCCATCTAAACAACTTATGGAAGACTTGTTCAAAATTGGTCGCCGCCAAGGGgtgag-----tttgaaaa-----------acac-CGGA----TCattaaa---atggaaatggtTTGTTTTGGAACACAAACCTTCATGAAGCCACTTTT
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2018492 201 +  4147112 --TTCC-----AGGAGATGTGATATCAAAACAATGAGAAACAAATACGAGTTCATCAGATATTCCAGTGATCCTTCAAAGGAACTTATGGAGGACTTGTTTAAAATTGGTCGACGTCAAGGGGTGAgtatcttttgaaaa-----------acacacgGG-GACTCATTAAAG--AGGGAAATGGATTGTTTTGGAACACACACTATCATGAAGCCACTTTT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   53420 217 +   343467 TTTTCCGGTTTAGGCGCTGCGAcatcaaaaaaatgcgcaaaaagtACGAGTTCATTCGTTACTCCAGTGATCCGACAAAACAACTCATGGAAGACTTGTTCACAATTGCTCGCCGTCAAGGGGTGAGT----ATTGAGAATGGTGATGTCAAAATACCGGCGGCTCATTATTGCAcgggaaattttttgttttgatgga-AAACTCTCATGAAGCCACTTTT
i caeJap4.Scaffold18142 C 0 I 198

a score=1000.000000
s ce10.chrX             3627485 1 + 17718866 C
s cb4.chrX              8746223 1 + 21540570 C
i cb4.chrX              C 0 I 124
s caeRem4.Crem_Contig0   750393 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5752446 1 + 20921866 C
i caeSp111.Scaffold630  C 0 I 18
s caePb3.Scfld02_0      2018693 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold18142   53637 198 +   343467 I

a score=-20558.000000
s ce10.chrX             3627486 124 + 17718866 ----GTTATTTTTTT-ATACTGCGGGTTTTGTGGCAGCATGA--AAAAAATGCTGAGATG---AAGATAAACATCAAATAACAA--------------TTCACTTTTATGGTCATGAATTACATTTTTGTTTCACTTATGCTTTACC----T------------------------------------------------------------
s caeRem4.Crem_Contig0   750394 105 -  4500979 TCTCATGGCGATCGCTAAACTAGGAAATagctgaaaagagaa--ataaaatga-gggat----aaaatgaaatgaaggaACTGA-----------------------------ATAACTT---------------CTGGAAaccatc----tca------------------aaaaat----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5752465 147 + 20921866 ----ATGAGTTTCAG------------TGACTAAAAACTTAC--AAAGCATGa-gggatttcaaaaatgaatagtaAAAAGTGACATTTTGTAGTTTCTTTAACCATAAAATAATGAAAG---------------TTGAGAAGAAAC----TAA----CAAACTCAGAGACCACGAActgaag----------ttttga-------------
i caeSp111.Scaffold630  I 18 C 0
s caePb3.Scfld02_0      2018712 161 +  4147112 ----ATGAAATTTTC------------TGGttgagaataaaatgaaagaaaaa-gggatgc--aaaatgaagagaatgaagtgG---------------TGAATAGTATAAT--TGAGTT---------------TTATGAATCAACATCATAGTCTTCAGATTTGGAAGAATAGAATAAAAGTAgtagacatttttgaaacatcaagtTAT
i caePb3.Scfld02_0      I 18 C 0
e caeJap4.Scaffold18142   53637 198 +   343467 I
e cb4.chrX              8746224 124 + 21540570 I

a score=-772.000000
s ce10.chrX             3627610 5 + 17718866 TTTTA
s cb4.chrX              8746348 5 + 21540570 tttga
i cb4.chrX              I 124 C 0
s caeRem4.Crem_Contig0   750499 5 -  4500979 cataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5752612 1 + 20921866 ----t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2018873 5 +  4147112 TCTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   53637 198 +   343467 I

a score=320239.000000
s ce10.chrX             3627615 461 + 17718866  
s cb4.chrX              8746353 499 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   750504 458 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5752613 456 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2018878 473 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   53835 524 +   343467  
i caeJap4.Scaffold18142 I 198 I 2506

a score=78860.000000
s ce10.chrX             3628076 436 + 17718866  
s cb4.chrX              8746852 467 + 21540570  
i cb4.chrX              C 0 I 1077
s caeRem4.Crem_Contig0   750962 462 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5753069 494 + 20921866  
i caeSp111.Scaffold630  C 0 I 55
s caePb3.Scfld02_0      2019351 458 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   54359 2506 +   343467 I

a score=546.000000
s ce10.chrX             3628512 2 + 17718866 TT
s caeRem4.Crem_Contig0   751424 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2019809 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 I 563
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I
e caeSp111.Scaffold630  5753563 55 + 20921866 I

a score=95.000000
s ce10.chrX             3628514 28 + 17718866 T-----------------TTAAAAGTTAATCAGGTAACAATTTGA
s caeRem4.Crem_Contig0   751426 45 -  4500979 taagaagaaataattttgttaaaaGTTCACCCAACAATAGAATGA
i caeRem4.Crem_Contig0  C 0 I 131
e caePb3.Scfld02_0      2019811 563 +  4147112 I
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I
e caeSp111.Scaffold630  5753563 55 + 20921866 I

a score=0.000000
s ce10.chrX             3628542 1043 + 17718866  
e caePb3.Scfld02_0      2019811  563 +  4147112 I
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I
e caeSp111.Scaffold630  5753563   55 + 20921866 I
e caeRem4.Crem_Contig0   751471  131 -  4500979 I

a score=354.000000
s ce10.chrX             3629585 42 + 17718866 gaaaataaaaaattgaaaaa---aaaaacagaaaaagg---------------taaaaaa
s caePb3.Scfld02_0      2020374 60 +  4147112 gagaaaaaaaaactgaaaaccctAGTAACTGATGAATGCAGCATGGGAACTAttaaatca
i caePb3.Scfld02_0      I 563 C 0
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I
e caeSp111.Scaffold630  5753563 55 + 20921866 I
e caeRem4.Crem_Contig0   751471 131 -  4500979 I

a score=1187.000000
s ce10.chrX             3629627 10 + 17718866 aaTTGTTTCG
s caeSp111.Scaffold630  5753618 10 + 20921866 aatcttttca
i caeSp111.Scaffold630  I 55 C 0
s caePb3.Scfld02_0      2020434 10 +  4147112 aagtttttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I
e caeRem4.Crem_Contig0   751471 131 -  4500979 I

a score=546.000000
s ce10.chrX             3629637 1 + 17718866 A
s caeRem4.Crem_Contig0   751602 1 -  4500979 a
i caeRem4.Crem_Contig0  I 131 C 0
s caeSp111.Scaffold630  5753628 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2020444 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   54359 2506 +   343467 I
e cb4.chrX              8747319 1077 + 21540570 I

a score=-1963.000000
s ce10.chrX             3629638 5 + 17718866 AATTG
s cb4.chrX              8748396 5 + 21540570 aattt
i cb4.chrX              I 1077 C 0
s caeRem4.Crem_Contig0   751603 5 -  4500979 aaatg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5753629 5 + 20921866 atgaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2020445 5 +  4147112 cCGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   54359 2506 +   343467 I

a score=310714.000000
s ce10.chrX             3629643 691 + 17718866  
s cb4.chrX              8748401 691 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   751608 703 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5753634 643 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2020450 694 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   56865 715 +   343467  
i caeJap4.Scaffold18142 I 2506 C 0

a score=-4587.000000
s ce10.chrX             3630334 266 + 17718866 GGTAAGAC-GGTTTTTTGTTGCAAggtctcgacacgacctaaaattccaagtgctggctgcaaaaaacagttatgcatctttaaacagtactattttcaaaATCTGTCTTCTGGGTCGAGTCCTAGTCAAATCAAGTGATTTTCAAAACTTTCTAGCTTTAAAGTTGTAAGGCGCAAAATGTTTGTTTCTCGCCTCAAATTGAAAAATGTGGGACAAATTCCAAAGACTTTGGCAATAGACTCATCAAATATTTTATTTTGCATTCA
s caeJap4.Scaffold18142   57580  71 +   343467 GGTACGTCAGGTTGTTTGTAATAA----------------------------------------------------ATCTTTTAA---------------------------------------------------------------------------AAAGGT--------------------------------ATTGAAGTAtgt-------atttttaacatttt------------------------------tattca
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2021144   0 +  4147112 C
e cb4.chrX              8749092   0 + 21540570 C
e caeSp111.Scaffold630  5754277   0 + 20921866 C
e caeRem4.Crem_Contig0   752311   0 -  4500979 C

a score=173177.000000
s ce10.chrX             3630600 428 + 17718866 GGCATTGTGATCTCAATGAAGATTTGGAATTTTTCGAGTTTATTCAATATTCCAATAATCCAGAAACCACAATGATGCCACAACTAGAAGAAATGCTGAAACGGCAAAAAGtaaa----------atatatttaaaaa---atatttattgtaaaacataattat-attttCAGGTACCAAGTGACTCGATCAGATTTATTAAAAATGAATTACTATATAAAAAGTCGAGTCATTCTACCACAGGGACACCAGCAAGCCGCTTCTATCGTTCCAGGTACTCA--TAATTTGAAC--------TTAACGTTTTAATATTAGT-------TTTTCAGATTGATGAGCTCGCCGTATTTACTGGAGTATATTGTTAAAATGTTCTACTATGATTTTATCAGATTTCACTATCCTTTGCCTCCTACTTTTT----GATAACGATT-----ATTCTAGTT-------TAATTTATTTTTA
s cb4.chrX              8749092 427 + 21540570 GGCACTGCGGCCTAAAtgaggaatttgaatttttcgagtttatCCAATACTCTGGAAACGCAGAGGACAAAATGGTCCCACAGCTTCAAGACCTCTTAGAAAGACAAAACGTGAG---------AAATTATTTTCGTGTtaacaaaattctgaaagttc-------ggTTTCAGGTTCCGGAAAAATCTATCGAGTTCATCAAAAACGAGCTTATCTACAAAAAATCAAGTCATTCAACAACGGGTACACCTGCTAAACGCTTCTATTACTCTAGG---TAA--GTCTGTGAGAACAATT--TCACCATTTCATT-taaattaacaaattttcagactcatgAAATCCCCATACCTGCTTGAATTCATCGTCAAAATGTTTTACTACGATTTTCTCCGCTTTCATTATGAGCTGCCACCAGGATTCT----Ga-------------gttttacgt-------tttttttttttgg
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   752311 418 -  4500979 GGCATTGTGATCTGAATGAAGAAgtagaatttttcgaatttattcAATATTCCAGTAATGCAGATGATAACTTGATGCCACAGTTTGATGATTTATTGCAAAGGCAAAAGGTTTG----------TATGAGTTATGTG---AAAGAGTTTACATAACTT-------TATTGCAGGTGCCCAGAAGATCTCGAGACTTCATTAGAAATCAATTGGTATATCAGAAGTCGAGTCATTCAACAACTGGGACACCAGCAAAGAGGTTTTATTATTCCAGG---caa--gttctgaaaaagaa----tcaaGGTTTTGAT-tgcgt-------ttttcagattgatgaAGTCACCGTACCTATTGGAGTTTATTGTCAAGATGTTTTACTACGATTTCCTTCAGTTTCACTATGAATTACCACAAGGTTTTTAGCGGG-------------ATAATAGGT-------TTTGTTAATTCAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5754277 421 + 20921866 GGCATTGTGATCTGAACGAGGAAGCGGAGTTTTATGAGTTTATTCAATATTCCAATAATGCGGAAGACAGATTGATGCCGCAGTTGGAAGATATGCTGAAAAGACAAAAGGTAAG----------TCTTTTCTTCGAT---ACATCTGTTAGGAATCTT-------CTGTTCAGGTACCAAGAGGATCTAttgaattcattaaaaatgaattattgaaCAAGAAATCAAGTCATTCTACTGCCGGTACTCCAGCAAAACGGTTTTATTACTCAAGGT--TTA--GTTTTTACACCTATTTcctcactttttcaat-------------gtttcagaCTTGTGAAATCTCCATATCTGTTGGAATACATTGTCAAAATGTTTTACTATGACTTTCTCCGATTCCATTATGAGTTGCCACCTGGTTTCT----AG-------------ATCACACTTACATCagttatttattttga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2021144 432 +  4147112 GGCATTGTGATTTGAACGAAGAGATGGAGTTTTATGAGTTTATACAGTACTCAAGTAATGCAGAAGATAGAATGATGCCACAATTGAAGGATTTGATGCAGAGACAGAAGGTCGG----------GAAATCTAGAGAA---ACATAAATTAACATAattagtttgaattttcaggttcCCAGAAGATCAATTGATTTCATAAGAAATCAATTGT---ACAAAAAGTCTAGTCATTCAACTACAGGTACACCTGCAAAACGTTTTTACTATTCCAGGTA-TTACTGATTTTCGGTTGATCTGCTGAACTAAtccat-ttga--------ttttcagattaatgAAATCACCGTATTTACTGGAATTCattgtgaaaatgttttattacGACTTCCTCCAGTTACATTACGAGCTGCCACCGGGTTTTT----GA-------------TTCAAgtattcagaattgaattatCttta
i caePb3.Scfld02_0      C 0 I 184
s caeJap4.Scaffold18142   57651 448 +   343467 gGCATTGTGACCTACCCGACGAGcgagaatttttcgagtttttacCATATTCCACTGACTCCGAGGAAGAATTCATGCCACATTTTGAAGACTTGTTGCAAAGACAAgatgtatgtacatacatataattttttttta---attctaagcAATAAATACGTTTAA-ATTTGCAGGTACCTGAAAGTTCAATCCAGTTTATCCGAGACCAATTTTCGACTAGAATACCAAATCATGCAACAACGGGTACTGCAGCCAAACGGTTTTATTACAATCGG---TAC--GTTTTTAGAATTCAAA--TAGAGATTTTGAA-TAAAACAG----TTTTCAGACTGATGAATTCACCGTATCTCTTGGAATTTATTGTCAAGATGTTCTATTGGGACTTTATTCAATTTCATTACGCTTTTCCTCCAGGATTTG----AACAATAATTAGTTACTTTTTGGC-------TTATTTATTTGTG
i caeJap4.Scaffold18142 C 0 C 0

a score=91.000000
s ce10.chrX             3631028 1 + 17718866 A
s caeJap4.Scaffold18142   58099 1 +   343467 A
i caeJap4.Scaffold18142 C 0 I 4018
e caePb3.Scfld02_0      2021576 184 +  4147112 I
e cb4.chrX              8749519 7 + 21540570 I
e caeSp111.Scaffold630  5754698 0 + 20921866 C
e caeRem4.Crem_Contig0   752729 4 -  4500979 I

a score=-4584.000000
s ce10.chrX             3631029 29 + 17718866 ACGTCTCTGTTATAAAATTCA--------AAAAT---------TTT
s cb4.chrX              8749526 39 + 21540570 ---atTATATTTTGTAGTTCCTTT----TGAGATCCTTTTGTGTTT
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   752733 26 -  4500979 ---tccatatttttcattcac--------GGGAT---------TTT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5754698 38 + 20921866 ------atagttCATATCTGCTTTCAAACGGgat--aaataatttt
i caeSp111.Scaffold630  C 0 I 236
e caePb3.Scfld02_0      2021576 184 +  4147112 I
e caeJap4.Scaffold18142   58100 4018 +   343467 I

a score=-5033.000000
s ce10.chrX             3631058  97 + 17718866 TCAAAGAA--------TATATTATTAGGTACTACTATTCGGAAAACATTT--ATGTATTACTTTCAATT------------------TGTGAAATGAAGAATT--TACAAGAATGAAAAAAGGAATG---
s cb4.chrX              8749565 126 + 21540570 TGTACGAGGTAATTTATTTATAAACAGAGTTTGCATTCCCAAATGCATATTGTTTTATTCGTTCAGTTTGTGAAATTGTGTCA--AAAAAGGAATAGAATCTTGTTCGAGAATTGGAA--GAGATTAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   752759 108 -  4500979 TCAtcgag--------tttaaaaaat----ttgaatcattATATGAATGT--ATTTATTGGTTTCAGTCAAAGTTTTAGTTCAATAATatggaatgaaaaatc-----aaaagtggaAACGGGGTTG---
i caeRem4.Crem_Contig0  C 0 I 255
e caePb3.Scfld02_0      2021576 184 +  4147112 I
e caeJap4.Scaffold18142   58100 4018 +   343467 I
e caeSp111.Scaffold630  5754736 236 + 20921866 I

a score=1248.000000
s ce10.chrX             3631155 85 + 17718866 TTTGTAT---GCAAGTA------TAAAGTTGCCTAATTGCAAATCAATTTTGAACATTAAGTACATATATTTATCTTTGAAGTACGAAAAGAAT
s cb4.chrX              8749691 93 + 21540570 ATTGAATTCGGAATGTAGCGGATTACAGTTGCCTATTTGTAAATCGgatgaaaataggaaaaataggt-tttttggtTGGGGTTGGAAAAGAAT
i cb4.chrX              C 0 I 161
e caePb3.Scfld02_0      2021576 184 +  4147112 I
e caeJap4.Scaffold18142   58100 4018 +   343467 I
e caeSp111.Scaffold630  5754736 236 + 20921866 I
e caeRem4.Crem_Contig0   752867 255 -  4500979 I

a score=0.000000
s ce10.chrX             3631240 1214 + 17718866  
e caePb3.Scfld02_0      2021576  184 +  4147112 I
e caeJap4.Scaffold18142   58100 4018 +   343467 I
e cb4.chrX              8749784  161 + 21540570 I
e caeSp111.Scaffold630  5754736  236 + 20921866 I
e caeRem4.Crem_Contig0   752867  255 -  4500979 I

a score=1099.000000
s ce10.chrX             3632454 52 + 17718866 TAAAGTTGCCTAATTGCAAATTAATGTTGAACACAGAGTATTAATTTCCATC
s caePb3.Scfld02_0      2021760 51 +  4147112 TATAATTGCCTATATGCAGATTGG-GTGAAGTTAAGGTTATATAGTCCCATC
i caePb3.Scfld02_0      I 184 C 0
e caeJap4.Scaffold18142   58100 4018 +   343467 I
e cb4.chrX              8749784 161 + 21540570 I
e caeSp111.Scaffold630  5754736 236 + 20921866 I
e caeRem4.Crem_Contig0   752867 255 -  4500979 I

a score=147.000000
s ce10.chrX             3632506 3 + 17718866 TTA
s caePb3.Scfld02_0      2021811 3 +  4147112 TAG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   62118 3 +   343467 tta
i caeJap4.Scaffold18142 I 4018 C 0
e cb4.chrX              8749784 161 + 21540570 I
e caeSp111.Scaffold630  5754736 236 + 20921866 I
e caeRem4.Crem_Contig0   752867 255 -  4500979 I

a score=1540.000000
s ce10.chrX             3632509 6 + 17718866 AAAAAA
s caeSp111.Scaffold630  5754972 6 + 20921866 aaagaa
i caeSp111.Scaffold630  I 236 C 0
s caePb3.Scfld02_0      2021819 6 +  4147112 TAAGCA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   62121 6 +   343467 aaaaaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8749784 161 + 21540570 I
e caeRem4.Crem_Contig0   752867 255 -  4500979 I

a score=1000.000000
s ce10.chrX             3632515 2 + 17718866 AA
s caeRem4.Crem_Contig0   753122 2 -  4500979 aa
i caeRem4.Crem_Contig0  I 255 C 0
s caeSp111.Scaffold630  5754978 2 + 20921866 aa
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2021825 2 +  4147112 CA
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18142   62127 2 +   343467 aa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8749784 161 + 21540570 I

a score=149747.000000
s ce10.chrX             3632517 214 + 17718866 GAAAAATAATAATTATGCAATTTTTTATGCTTCAGTTTTTGGGCGAGAGTTGATCCACGACTTGATCGAGTCGATCGCAGTAATTTTTTCAATGAATTCCTGTAGTTTTGGATATTTTCGAAGTGCACCAGGCAAGATTTTGGAGTTCATAAACCAGAAAATGTGGAAAATGGCAAGATCGGCGTAGGATATCTGAAATGAGAACACTTTGAAA
s cb4.chrX              8749945 204 + 21540570 GAGAAATGATAA----GACAATATTTAGGCCTCTGTCTTTGGGCGAGAGTTGATCCATTGCTTGATGGAGTCAATCGCAGAAATCTTCTCAACAAACTCATGGAGCTTTGGGTACTTGCGAAGTGCTCCCGGAAGGATTTTAGAGTTCATGAACCAGAAGATGTGGAAGATCGCGAGATCGGCGTAGGAGATCTAGAATAATTTATTA------
i cb4.chrX              I 161 C 0
s caeRem4.Crem_Contig0   753124 196 -  4500979 gaaaaaagataa----g-------ttAGGCTTCAGTCTTTGGACGAGAGTTGATCCATGACTTGATCGAGTCGATAGCTGAGATTTTCTCAACAAATTCGTGCAATTTCGGATACTTGCGAAGAGCTCCTGGGAGGATCTTTGAGTTCATGAACCAGAAGATGTGGAAGATGGCAAGATCCGCGTAGGAGATCTA-AATAATTGATTA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5754984 210 + 20921866 gagagagagaga----gaaaccaTTTAGACTTCAGTTTTTGGGCGCGAGTTGATCCATGACTTGATAGAGTCGATTGCCGAGATCTTCTCAACGAACTCGTAGAGTTTTGGAAACTTGCAAAGTGATCCTGGAAGGATCTTCGAGTTCATGAACCAGAAGATATGGAAGATTGCAAGATCAGCGTACGagatctgaaagaaaaaatgtttgaag
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2021844 201 +  4147112 GAAGGATAGAAA----AGAATGATTTAGACTTCGGTCTTTGGACGAGCAGCGATCCATGACTTGATGGAGTCGATTGCAGAGATCTTCTCGACGAACTCGTAGAGTTTTGGGAACCGACGGAGTGATCCCGgtagaatttttgagttcatgaACCAGAAAATGTGGAAGATGGCGAGATCAGCGTatgagatctgaaaaaaaaaa---------
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18142   62129 185 +   343467 ---------------gaaaagaatttAAGCCTCAGTTTTTGGGCGAGAATTGATCCACGACTTGATCGTGTCTATTGCGGCAATCTTATCCACAAATTCCAAAAGTTTTGGGTATTTGCGAAGAGCACCCGGCAGTATTTTGGAGTTCATGAAccagaaaatgtgaaaaattgcaaGGTCTGCGAACGAAATCTGAAAGT--------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-34923.000000
s ce10.chrX             3632731 152 + 17718866 TGAAACAAAATTTGTTGAG---TTTCAGTACAGTA---------GGAACAACATT--------TTCGGCAATT-CTATAAGTAGACACCTGCGGATTTACAAAATTTACGGCAATTCAATAATATGGTCATTCAGAAATGCGACAATTAGGAAAATGAACAATTATCAAGTTC
s cb4.chrX              8750149  72 + 21540570 ---------------TGAGAACATAGTGTAAGATA---------AGTGAGAGATT--------CTCAATTGTTACTGAAAATAAA------------TGTAAAAC-------------------------TACAGAGATCC--------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   753320  48 -  4500979 ---------------TGGG---ATTTTGCAATATT---------AGCGC---ATT--------TTTAGTTGC--Ctg---------------------gcaaaa---------------------------acaga-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2022045  50 +  4147112 --------------ttaaacaagtTTTGCAAGACACTTTTCAACAGAACATGATT--------TTCA-TCGT--C--------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   62314 103 +   343467 ---TGATACATGTTTTTGGAACTGTATGtactgta---------aaaactgtattaggtGCGACTCA-CTAT--CAGTGAAAGAAGTGCGCCTGTAATAGAGGAC-----------------------CGCCCCTAGGCCC--------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5755194   0 + 20921866 C

a score=148785.000000
s ce10.chrX             3632883 643 + 17718866  
s cb4.chrX              8750221 544 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   753368 617 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5755194 577 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2022095 601 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   62417 591 +   343467  
i caeJap4.Scaffold18142 C 0 I 38

a score=-6250.000000
s ce10.chrX             3633526  4 + 17718866 TATA-------------------------------------
s cb4.chrX              8750765 12 + 21540570 -------------------------atccca----aaatta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   753985 41 -  4500979 GTTTTCAATCAAATCCAATTCAGGGATCTCATTGGAAAATA
i caeRem4.Crem_Contig0  C 0 I 89
s caePb3.Scfld02_0      2022696  4 +  4147112 TATT-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   63008 38 +   343467 I
e caeSp111.Scaffold630  5755771  0 + 20921866 C

a score=-7461.000000
s ce10.chrX             3633530 41 + 17718866 GGTAACCGCGTGCGTATACTCTT------AGTTAATTTTCAAGTTTT
s cb4.chrX              8750777 18 + 21540570 -----------------------------gATAGGAAATTTTCTTCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5755771 25 + 20921866 ----------------aattgat------aattgttATTTGTGTGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2022700 36 +  4147112 ----ACC----AATtcaattcataaaaacaaGTGGGATTAGT---TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   63008 38 +   343467 I
e caeRem4.Crem_Contig0   754026 89 -  4500979 I

a score=-7220.000000
s ce10.chrX             3633571 26 + 17718866 CA--AACCAATATCTC-------------AACTTTTCAACT
s cb4.chrX              8750795 39 + 21540570 TA--GAGTCAAACGTCAACCCTACAAAAAACCAGATTGTTT
i cb4.chrX              C 0 I 16
s caeSp111.Scaffold630  5755796 26 + 20921866 CG--GATAAAAATGTT-------------GCGCAGTTGATT
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2022736 31 +  4147112 CGttgatcaaaaactc----------aaaacttaaTCAACG
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18142   63046 26 +   343467 CA--GATAGACGACCT-------------GTTTCCGTTACA
i caeJap4.Scaffold18142 I 38 C 0
e caeRem4.Crem_Contig0   754026 89 -  4500979 I

a score=110979.000000
s ce10.chrX             3633597 188 + 17718866 CACGCACTTGCTTTAATTTCCGGCCATGCCGACTTTTCCACTCTTTCATCCGTGTACTGCACTCCTGCGTAGGCGAAGATAAGCCTTGCGGGCTCAGCTCTTCCCATCATATTGAAATATTGCAGTTTGTACTCCATCATGACT---------GAATATAGTTGA----------AATTAAC-----AAAAAAAAAA----T---GTTCCAAACGAAAA
s cb4.chrX              8750850 197 + 21540570 TACGCACTTGGTTTAATTTCCGGCCACTGGGACTTTTCGATTCTTTCGTCCTTATATTGGACGCCGGCGTAGGCGAATATGAGCCGTGCTGGCTCAGCTCTTCCCATCATGTTAAAGTATTGAAGTTTGTACTCCGCCATGGCT-GGAAAAGTGCATGTGACAAG----------GTAtaca-----aaaaaataagga------attcaaaattatgg
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   754115 213 -  4500979 TACGTACTTGGTTTAATTTCCGGCCATGCGGACTTCTCGACTCGCTCATCCTTGTATTGGACGCCAGCATAGGCAAAGATGAGCCTGGCTGGCTCGGCTCTTCCCATCATGTTAAAGTACTGAAGCTTGTACTCGGCCAtggct-gaaataaaaaaggtaaaaagaaataatgacgtgtata-----aaataaaaacgatattggattaaaaattaagg
i caeRem4.Crem_Contig0  I 89 I 8
s caeSp111.Scaffold630  5755834 194 + 20921866 AACGTACCCTTTTTAATTTCCGGCCATGCTTGTTTCTCGATACGCTCATCGACGTATTGGACACCTGCGTAGGCGAAAATGAGTCTTGCCGGTTCGGCGCGTCCCATGATGTTAAAGTATTGAAGTTTGTACTCCGTCATGGctgaaaacatgaaacatACGTAG----------agttcga-----gaaaaat-------t---atgaaaaacaaaaa
i caeSp111.Scaffold630  I 12 I 256
s caePb3.Scfld02_0      2022779 203 +  4147112 AACGcacttttcttgatttccGGCCATTGCGCCTTATCGACGCGTTCATCGACATATTGAACACCGGCGTAGGCAAAGATAAGCCTTGCTGGCTCCGCGCGTCCCATGATGTTGAAGTATTGAAGCTTGTACTCCGACATGGCT-ATAACACAAAATAGA--TAG----------GAATCaaaccacaaaaaataaggggat---gggaagaaagaaaa
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18142   63072 191 +   343467 CACGTACTTGGTTTAGTTTTTGGCCACGCAGACTTTTCAACTCGTTCATCTTCGTACTGAACACCGGCATAGGCAAAGATGAGGCGGGCTGGCTCCGCGTGCCCCATCATGTTAAAGTATTGAAGTTTGTATTCTGTCATTGTTCTGGAAAATAAATATGAGTTG----------GGAATTA-----GAAAAGTACA--------ATGCGAAAT-----
i caeJap4.Scaffold18142 C 0 C 0

a score=-1042.000000
s ce10.chrX             3633785  7 + 17718866 CGA---AAAG
s cb4.chrX              8751047  4 + 21540570 ------TAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   754336  4 -  4500979 ------TCAG
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0      2022982 10 +  4147112 tgaggaaaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   63263  7 +   343467 ---TCAAAAG
i caeJap4.Scaffold18142 C 0 I 513
e caeSp111.Scaffold630  5756028 256 + 20921866 I

a score=-1422.000000
s ce10.chrX             3633792 12 + 17718866 TGGTCCAGGGAA---
s cb4.chrX              8751051 15 + 21540570 AAATATACCGACTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   754340 15 -  4500979 AGatgaaagaaggag
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2022992 12 +  4147112 tgataaaaggaa---
i caePb3.Scfld02_0      C 0 I 421
e caeJap4.Scaffold18142   63270 513 +   343467 I
e caeSp111.Scaffold630  5756028 256 + 20921866 I

a score=-1552.000000
s ce10.chrX             3633804 13 + 17718866 AAGTG------------------------------------TTGGACAA
s cb4.chrX              8751066 17 + 21540570 GAATAAAAT--------------------------------TTAGACAA
i cb4.chrX              C 0 I 413
s caeRem4.Crem_Contig0   754355 49 -  4500979 aaaaagtatGAGCATTCTGTTTTGAGACCCAGGCGGACCAGTTGGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I
e caeSp111.Scaffold630  5756028 256 + 20921866 I

a score=1746.000000
s ce10.chrX             3633817 63 + 17718866 TCAATTAGTGGTTGGAAGAGCACTGGG---AAAGTGCAATCAAAAAATTTATAGTGCTCTAATGAA
s caeRem4.Crem_Contig0   754404 65 -  4500979 CCAATTAGAGTTTGATAGAGGTTTCGGGAAAAAGAGCAATT-AGGAATTCTTAGTTTACTAATGAA
i caeRem4.Crem_Contig0  C 0 I 235
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I
e cb4.chrX              8751083 413 + 21540570 I
e caeSp111.Scaffold630  5756028 256 + 20921866 I

a score=0.000000
s ce10.chrX             3633880 947 + 17718866  
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I
e cb4.chrX              8751083 413 + 21540570 I
e caeSp111.Scaffold630  5756028 256 + 20921866 I
e caeRem4.Crem_Contig0   754469 235 -  4500979 I

a score=60.000000
s ce10.chrX             3634827 2 + 17718866 AG
s caeSp111.Scaffold630  5756284 2 + 20921866 aa
i caeSp111.Scaffold630  I 256 C 0
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I
e cb4.chrX              8751083 413 + 21540570 I
e caeRem4.Crem_Contig0   754469 235 -  4500979 I

a score=338.000000
s ce10.chrX             3634829 2 + 17718866 GC
s caeRem4.Crem_Contig0   754704 2 -  4500979 GC
i caeRem4.Crem_Contig0  I 235 C 0
s caeSp111.Scaffold630  5756286 2 + 20921866 gt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I
e cb4.chrX              8751083 413 + 21540570 I

a score=67.000000
s ce10.chrX             3634831 1 + 17718866 G
s cb4.chrX              8751496 1 + 21540570 G
i cb4.chrX              I 413 C 0
s caeRem4.Crem_Contig0   754706 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5756288 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2023004 421 +  4147112 I
e caeJap4.Scaffold18142   63270 513 +   343467 I

a score=15219.000000
s ce10.chrX             3634832 32 + 17718866 CCTCGACGAATTCCAAAAGTTTC-AACGAGAAA
s cb4.chrX              8751497 32 + 21540570 TCTCAATGAATTTCGAGAGTTtcaaaaggaag-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   754707 31 -  4500979 CCTCAATGAACTCCGAGAGtttc-aatgaaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5756289 32 + 20921866 CCTCAATGGTTTCGAAGAGTTtc-aatgagaga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2023425 32 +  4147112 CCTCAATGGATTTCGAGAGTTTC-AATGAAAGG
i caePb3.Scfld02_0      I 421 C 0
e caeJap4.Scaffold18142   63270 513 +   343467 I

a score=136923.000000
s ce10.chrX             3634864 239 + 17718866 AGAAATGAGA------GAAGGCGTGATGAGATGCAATTTTTAAGTGCTGAAATGATTTC-GGCAGGCGCCGGAGCGAAATTCAATTAACTACGGC---TGCTCGTCTGAACGAGAAA----------------------------------------------ATC---GGGCGGG-------CCTCAATCTGAC--GTA----TGCCTGCAAGGAGAGCTCACCAACCAAGCACCATCCCCCATCTTTTT-------------------GAGCACGAAGACGCC-CCCTTTTAGAGAAAAAGAGGTGATGGAAATGAAA----------AAA------AGGA---AAAA
s cb4.chrX              8751529 287 + 21540570 -aaaatgagagagaaggAAGGCGTGGTGAGATGCAATTTTTAAGTGCCGAAATGATTTCGGGCAGGCGCCGGTGCGAAATTCAATTAACTGCGCCCCTTGCGTGTCTGAACGAGAAA----------------------------------------------AACCCGGGGCGGGGTCTCGTTCTCAATCTGACGTGTA----TGTCCATGCA-CAAGCTCACCCACCAAGCACCaccccttttcttcttccttcttgtttttttcggaGTGCTTCAAACCACACCCTTTTC--CCACCTAAa--taattggaagaaaaaggtATAAGTTGGCTGACGAGAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   754738 249 -  4500979 -gaaatgggA------GAAGGCGTGGTGAGATGCAATTTTTAAGTGCCGAAATGATTTC-GGCAGGCGCCGGAGCGAAATTCAATTAACTGCGCC---TGCGCGTCTGAACGAGAAA----------------------------------------------ACC---GGGCGGG-------TCTCAATCTGAC--GTA----TGTCTGCACG-AGAGCTCACCCACCAAGCACCACCCTCTTTCT-----------------------ATGCGCAAAGACACTTCCCTTTTGGGCACataaa--tgattgaaaaaaggtATTAGAAATaag--agtgagaaaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5756321 229 + 20921866 agaaatgggA------GAAGGCGTGATGAGATGCAATTTTTAAGTGCCGAAATGATTTC-GGCAGGCGCCGGAGCGAAATTCAATTAACTGCGCC---TGCGCGTCTGAACGAGAAA----------------------------------------------ACC---GGGCGGG-------TCTCAATCTGAC--GTG----TGTCTGCACG-AGAGCTCACCCACCAAGCACCACCCCTTTTCTT----------------------GCACAAAAGCGCTCT-TCCGTTTAGGCaca-------gattgaaaaaaag-----gtatTAAG-------------AAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2023457 238 +  4147112 AGAAATGGGA------GAAGGCGTGGTGAGATGCAATTTTTAAGTGCCGAAATGATTTC-GGCAGGCGCCGGAGCGAAATTCAATTAACT--GCC---TGCGCGTCTGAACGAGAAA----------------------------------------------ACC---GGGCGGG-------TCTCAATCTGAC--GTG----TGTCTGCCCGAAGAGCTCACCCACCAAGCACCACCCCTTTTCTT----------------------ACACACAAAGACACTCCCCTTTTTGGCACATAAA--TGATTGGAAAGAAG-----GTattagg------agaa---aaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   63783 259 +   343467 AAAAGGGTGA------GAGGACGGGTTAGAACCAAtttttttAGTGCTGAAATGATTTT-GGCAGGCACCGAAgcgaaattcaattaaatGCTCC---TA-GCTtctgaacgaaaaaaaaaagaaagaaagagggagagagagagagagggagcgggagaAGGACC---GGGAGGA-------TCTCAATCTGAC--GTATTATTTTCTGTGCG-CAAGCTCAC-------GCAGCACC-----------------------------------------------TCCTTTTCACCgaaaaaacgagaataagaagaag---aagaagaaaa------agaa---aaa-
i caeJap4.Scaffold18142 I 513 I 2894

a score=35812.000000
s ce10.chrX             3635103 295 + 17718866 GTTTACGCTGATTGAAAACTAAATGAAAAAAAAACTTTGATTGGATATTT---TTGGTTTACTATTAGATTTTGATTAGACAAGCAAAGCCAAAATGA-AAATTTTGAGGCGAAACA------ACTTTGAGCAGGACAATCTAACGTCT------------------AAACCCAAGTAG-TCATTCACTGCAAAAACTTTTCAAGGAAAAGAAAAAAAACACGAAAA----------AAAAGACGGAAAGATGG----------AAAGGAGCAAACTCTATGTTAACAATGACTTTG---AAAAAACA------TGCCT-CTCTCTGACGTAGG------------AGCTCTGTTCTGCTTGAAAA
s cb4.chrX              8751816 265 + 21540570 --------------------------GGATAAGCCGTTGATTGga-------ttttattttct-ctaaattccAATTG-------AGAAGAGGTTGTC-GACTTTTAAG--CAAGTC------TCTCTTCGAA---------------------------------------------A-TCATTCACTgcggaaaatttc--gaaaaggcaaaaaaaacacgaaaaactaaaaagtagaaaaaaagaagaagaagaaggaaagaaagGAGCAAACACTATTCTGAcaatgagtttg---aaaaaaaaaaacatcgtcGTCTTTCTGACGTAGGAAGAAGCTAGGAAGCTTTGTTCtggttagaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   754987 272 -  4500979 gtttctt-------------------gaaaaatgtgttgatTGAAAGCGTTGATTGGTTTTGT-TTAAATT--------------AAAGGcgattgga-aaattggaaa--taagcC------TTTCGTGGCGTAGGAGGGTGAGCCAGATAGCTTACAGAGGCCGCGACTCCC----A-tcattcactgaaaaaactttg--agagagaaagaaaaaacacgaaaa----------agaagaatctaaggaga----------aaaggagcaaaCACTATTCTGAcaatgagtttg---aaaaaaca------tgcCG-CCTTCTGACGTAGT------------AGCTTTGTTCTGGTTGG--A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5756550 260 + 20921866 GTTTCCG-------------------AGAAATAGTGTTGATTGGAAACGTTGATTGGTTTTGT-TTAGATT--------------AAacttgatttga-aaaagttggg--AAAACG------TCTCACCGCTTGACACTAAAGCTCAG----------------AAAACTCCTTGGAATTCTTTCATAGAAGAATACTC----GAAGAGAAGTACGAgca--gaatg---------aaaagaaccaaataagga---------aaagaagcaaaCACCATTCTGACAATGAGtttgaacagaaaaca------tGCT--TCGACTGGGGtaaa------------aactttgttttgGATGA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2023695 286 +  4147112 gtttccg-------------------gaGAAATGTCTTGATTGAAAACGTTGATTGGTTTTGT-TTAGATT--------------AAAAGCGAttggagaaaagaagtg--aaaatgagtttttttggcGGCATG-CATCGGGACTTTGCTTACAGAGAACGAGCAAAACTTCGAAGAA-TCATTCACtcaacaaaacttt--gaaaaagcagaaaaaacacgaaaaa---------aaaagaagcaaagggaga---------aaaggagcaaaCACTATTTTGAcaatgagtttga--aaaaaaca------tgcc--TCGACTGACGTATG------------AGCTTTGTTCTGCTTGAAAA
i caePb3.Scfld02_0      C 0 I 1208
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=2955.000000
s ce10.chrX             3635398 23 + 17718866 GTTCGGTAAAACTGAAAAAAAAA
s cb4.chrX              8752081 17 + 21540570 ------aaaaagtgcagaataaa
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig0   755259 17 -  4500979 ------AAAAAGTGCAGAATGAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  5756810 16 + 20921866 -------Acaagtgaagaaaaat
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=552.000000
s ce10.chrX             3635421 12 + 17718866 CGCTACTGATTT
s caeRem4.Crem_Contig0   755283 12 -  4500979 TGCTGCCGAAAA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5756826 12 + 20921866 cgGTATTGAGTT
i caeSp111.Scaffold630  C 0 I 329
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8752098 78 + 21540570 I

a score=-1102.000000
s ce10.chrX             3635433 12 + 17718866 TT--------------------------------------TAATTATTGT
s caeRem4.Crem_Contig0   755295 50 -  4500979 TTGAGACACATAAGAAAGTGCGTAATAGAAGATGAGAACACACTTTTTGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8752098 78 + 21540570 I
e caeSp111.Scaffold630  5756838 329 + 20921866 I

a score=-4673.000000
s ce10.chrX             3635445 120 + 17718866 --------TGTTATTCTTCTAC--------------------CCGAATATTTT-----GTTTTGCCA-------------------AACA-----------------------------------GGCTGATTACGGAGAAATACATAGAAGATTACTGGTTTTGTCATATCAAAT-----GAAA---AACTCGTAAATATGAATATAACATTCA
s cb4.chrX              8752176 135 + 21540570 --------tgttatttttcagt---------------gaaatctAGTTCCTGT-----GTTACTTCT----------------GTCAACA-----------------------------------ACCTGATTAAAAATGTCTatacagaat-tttcagtttttgtcgggtcaggcaaaaaaaaaccaaactagAAAATATGAATGTTTTGTTCT
i cb4.chrX              I 78 I 111
s caeRem4.Crem_Contig0   755345 198 -  4500979 TGGGAAGGAAGTATTCTGCTGGTACGTGATGGGAatagaaaacaactttttttcagtcgttCTTTCTCAGACTTCACCAGGGAGACACCAAATGTGTGTAAGACTCCCCGTTACTATTGTCAACAACCTGATTAAAGCTTTCTATCCAAA----TACGAGTTTTGTCAAACCAAGC-----AAAACTGGTCACGAAAAT---AATATTAT-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5756838 329 + 20921866 I

a score=17.000000
s ce10.chrX             3635565 43 + 17718866 GAAAAAATTCAACTGAGCCCTTCATT-------TTTTGAGTATACATTTA
s caeRem4.Crem_Contig0   755543 48 -  4500979 GTACGTATTTCTATCAGTC--TCATCAAAGAAATTTTGTGTAGACGTTGA
i caeRem4.Crem_Contig0  C 0 I 54
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8752311 111 + 21540570 I
e caeSp111.Scaffold630  5756838 329 + 20921866 I

a score=0.000000
s ce10.chrX             3635608 24 + 17718866 AAGCAAAAGAAAGGAAATATTGAA
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8752311 111 + 21540570 I
e caeSp111.Scaffold630  5756838 329 + 20921866 I
e caeRem4.Crem_Contig0   755591 54 -  4500979 I

a score=2310.000000
s ce10.chrX             3635632 29 + 17718866 ACAAAATAGCCTCATT-TGGGTAAAAAACG
s caeRem4.Crem_Contig0   755645 30 -  4500979 ACAAATTGGCATCATTATATGCAGAAGAAA
i caeRem4.Crem_Contig0  I 54 C 0
s caeSp111.Scaffold630  5757167 26 + 20921866 ACAAATTGGCATCATTATGAGCTAAA----
i caeSp111.Scaffold630  I 329 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8752311 111 + 21540570 I

a score=-7612.000000
s ce10.chrX             3635661 207 + 17718866 GAGAAACTATGTATAACTACGTAGGTGGATT---ATG----GCAAAAAAATGTGAGAA---TTCTACTCGAACTCA---TTGCATGAATAATGCACCACACCATATACGAC--GAAACCGAAAATAGAAAAAAATATTTTCTAGTTTCTATGTATTTCACTAATGATCAGCGC-TAATTGTTTGTCAT--AGC---GCAAAT-------TTGGTCAAAGTTTTGCTGGTTTTTTT----
s cb4.chrX              8752422 181 + 21540570 ------------GAGAATATATGCATAACAC---ATGTCA-GATGATCAAagtagaaa-------attaaaa-----------aaaaacaaatagcAGGAGATTATTATTTTAattactccaa----aaaaaaacattttctaa---------gTACTGT--ATTCCAAATATAGAACCGGTCAATATAATgc---acaaaaacgtatttttcagaaaatt--tttggccatttt----
i cb4.chrX              I 111 C 0
s caeRem4.Crem_Contig0   755675 192 -  4500979 --------GTATAAAACTATGTGGGCGAGGC----------GACGAAAAACGTGAGAATTGTTCTACTCAAACTTATGCTTCCATGAATAATAAACCAAAAAGTATAATGC--GGCAccgaaa----aataaaaggaaatcGAG---------ATACTGCTGATGATGAAGAC-TAATTGTTTATCAC--TGC---GTAAAA---TATATTAGTGAAGCTT-GGTCGGCTTTCTT----
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold630  5757193 180 + 20921866 ------------GAAACTATAAAAGTAAGATGGCGCGTGATGAGGAAATATGTGAGAA---TTTCGCTTAAATTTATGCTTGCGTGAATAAAGAACCAAG-------------CCTGCTCATG----AGGAATACAT----------------ATATCACTAATGATAAACAT-TAATTGTTTACCAC--TGCTTTATAAAA-------CTGGTCAAGCAT-cctctgtttttcatttt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=-2437.000000
s ce10.chrX             3635868 31 + 17718866 TGAGTGATAAGGAATGTACCCAAAACAGCCG--
s cb4.chrX              8752603 19 + 21540570 ---------gacaattt-----tcaggagtgtG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5757373 27 + 20921866 ----ctagagaaaacGTATACGTaacaactg--
i caeSp111.Scaffold630  C 0 I 398
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeRem4.Crem_Contig0   755867 14 -  4500979 I

a score=61.000000
s ce10.chrX             3635899 9 + 17718866 GAATTATGT
s cb4.chrX              8752622 9 + 21540570 GAGCTCGGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I
e caeRem4.Crem_Contig0   755867 14 -  4500979 I

a score=-9481.000000
s ce10.chrX             3635908 170 + 17718866 GTTTCAGGAATTTCCGAGTTAGGAAAGTCAACAA-----AATATTT-ATGCAA-AAAAACCTCAAAACGTGGCAAAAAATTTCTGGAATTACTGGCACAATTGATCTTTTGCGAAAATAACTGGGTTGCAAATGAACATC-AATTGTT--TGATTTTGAATATATTTCTTGTTTTAAAAA--------------
s cb4.chrX              8752631 137 + 21540570 -TGTTA--AATTTCC-------Gattgctttgaa-----aatgtttgaagggG-AAAAAC----AGATCTAGGTTAAaatttttgcattcacagc--------attttttgaaa---------------------atttctagtttttcatctattagag--------gatttttgaaagacacccgtttttgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   755881 123 -  4500979 ---------GTTTCAG----GGGGGTGTCTAGAAATAATAGTATGTGAAGGAGTGATAAG----GGACGTGTGT---AACTTGCACAATGATAAC-------------TTGAGG---------GGTGGT------ATGTC-AGTCATTCAGGAACTGGAA--------TTGTTGTGATAA--------------
i caeRem4.Crem_Contig0  I 14 I 141
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=-943.000000
s ce10.chrX             3636078 164 + 17718866 CCAGAATATGTG----GAACATGTACATAGTTAATTTTATTATTTTGTCTGATAAAAAAAATCC---ATTTACAAAACCTT---CAAATGCATG--TTTTTACTT-------CTTCAAATGTTCTAATTATTTTTTTGA-----TGTAACGTTAA-----AAGATACGTACTC-----ACCTATTATA-TAGTTAAAAT
s cb4.chrX              8752768 197 + 21540570 cccgtttttgtactgaaaacgtgtaAAAAGTGTTTTTCCAAGAATTGGCAAATAGCAACAACTAcgaattatcaaaaacttatgtgaatgcaaaacttttgatttagGCCTGTTTCACATcctccaa--acttttcaaagcgCTTGGAAAATTGACAGCTGAGCTACAGTTTCctgaaaactatcaaaatggccaaaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I
e caeRem4.Crem_Contig0   756004 141 -  4500979 I

a score=-4222.000000
s ce10.chrX             3636242  58 + 17718866 ---tttgaacagtttaagtttatt---------------------------------------ttaacttaaaaattacaaactaataaaaatttccaca---------
s cb4.chrX              8752965 102 + 21540570 tcatctgga------aaatctgTTTTGTGTATCTTATTCGCCGGCACTGTGATTCCTGAGCACTGgaacaaacaaaaatcaaatga-aaaattgataacagTGAGTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   756145  37 -  4500979 ---CCTGGACCCATTAAGTCTGTT-----------------------------------------------------------CAA-GAAAGTTACCACA---------
i caeRem4.Crem_Contig0  I 141 I 64
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=-419.000000
s ce10.chrX             3636300 63 + 17718866 gagtacta---cttgaatggcaaaaat-tcag---ttcaagactgttTGAGGCTGCAATAGTCATAGAGG
s cb4.chrX              8753067 61 + 21540570 GAATGATAATTCTTGAGTGGCACGACTATCAGGAATTCCAGCTTTTT---------ATTTGATAAAACGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I
e caeRem4.Crem_Contig0   756182 64 -  4500979 I

a score=-5182.000000
s ce10.chrX             3636363 123 + 17718866 AAAATTGGtattttt--tatat----ataatttaaatCCTTCATG-AAAAACACT----------ATTTTAAAGTGCCAATATATTTTTTATGACT-----AAATTCTG-TAATACAATAAGTAGTTTTATGA----------------GTTACCTATTCAA
s cb4.chrX              8753128 159 + 21540570 AAATTCTGTACAAGT--CCTGttacgaaaaatttcaatccaCTTATATGCACATTCTTGGTGTTGATCTTAAATTATCAG-ACTTTTTCCATGAATTAAAGACCTCTTCATAAATCAACACCTAAATTTTTGACCATCTTAACTTCATCGTAACTTATCTAG
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   756246 129 -  4500979 AAGACTTGTATGTTTAGTTTATTTC-AAAGTTCTGAATATAAATA-ATGATTATTTGTTGAGTACATCTC--ATTACC---GtttttttCATCAGT-----ATATTTTGTTAAG-------CTGATTAGAAAACTACCTT--------------TTATCCGG
i caeRem4.Crem_Contig0  I 64 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=198.000000
s ce10.chrX             3636486 36 + 17718866 AAGTATTTTACAAAATGTATGGCTAACATGTTGCCC
s caeRem4.Crem_Contig0   756375 25 -  4500979 AAATGTTT------GTG-ATGGCTAACA----ATCC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8753287 33 + 21540570 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=164.000000
s ce10.chrX             3636522 7 + 17718866 -AAAAAAC
s cb4.chrX              8753320 7 + 21540570 AAAAGAA-
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   756400 7 -  4500979 -AACAAAC
i caeRem4.Crem_Contig0  C 0 I 63
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=172.000000
s ce10.chrX             3636529 79 + 17718866 ACACTTCTAGTATGAGCGAAATAAATTT----TTTATCTTTGAAATGTCAAATATCTTAGTCAGACTAATAAACTTCCCAGGT
s cb4.chrX              8753327 80 + 21540570 GCATGTCTGATGTctactgaaaatattcaagatatttttctgaaaaataaggt---tTGGTGAGACAAAAATGGTTGTCTAGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I
e caeRem4.Crem_Contig0   756407 63 -  4500979 I

a score=-5362.000000
s ce10.chrX             3636608 106 + 17718866 ATTCATCTTACCTAGCAAGTTTATTTATAAATGACTGCTTTTGCCGCAA--GGTCAATACTCAATTCGGTTTTTTTTTTTACCCGCGCG-----AGGTAAG-----------------CAATGGAGCCGG
s cb4.chrX              8753407  98 + 21540570 --GTATCTCGTCC----------TCAGTAGTTAAGTTCTCGTTTCACTACCGATTTTTATTA------GCTTT---------CCGGGGG-----AGAAAAGGCATATTGCCCTTTGTTCCGCATGCCCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   756470  88 -  4500979 ---------------------------------ACTGATTTTATCACCACAGTTTCCCACTAAAACTGACTTT---------ACGGGCGCTATCAAGAAAGGATAACACTTCCTTACTTGATAGAACCAA
i caeRem4.Crem_Contig0  I 63 C 0
e caePb3.Scfld02_0      2023981 1208 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=-3242.000000
s ce10.chrX             3636714 32 + 17718866 AGCC---ATTTTCCGTTCCGAA----TAGGTCCCAAACG
s cb4.chrX              8753505 39 + 21540570 AACCTATAAATCTGCTAGTAAAATCTAGGCTCCCGTACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   756558 22 -  4500979 AACC---AAA--TACTACTAAA------------GGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2025189 31 +  4147112 AGCC---GTTTTCTTCACTGAA-----TGGTCCCAGAGT
i caePb3.Scfld02_0      I 1208 I 17
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5757400 398 + 20921866 I

a score=-2020.000000
s ce10.chrX             3636746 365 + 17718866  
s cb4.chrX              8753544 309 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   756580 321 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5757798 457 + 20921866  
i caeSp111.Scaffold630  I 398 C 0
s caePb3.Scfld02_0      2025237 470 +  4147112  
i caePb3.Scfld02_0      I 17 I 17
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=-2145.000000
s ce10.chrX             3637111 22 + 17718866 ---------TGTGAAGAAGGAAGTGAATCGA
s cb4.chrX              8753853 10 + 21540570 ---------ccaaaaaaag------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   756901 13 -  4500979 ---------actgaagaaggaa---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5758255 21 + 20921866 AGCCACCccaatggaaaagaa----------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2025707 17 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=47718.000000
s ce10.chrX             3637133 342 + 17718866 AGAGAAAGAGTAAATGTAACTCTCAAATTTTTTG-----TTGAAATTGTGATGAAAAGA---TGCGAAAAGAAA-------------AAGGA-----GAGGG-------TACTTTTCTAAAGCACACTTGACAAGGCAAAAGTTTTCAGGAGTCAATGTATCTTCCAAAGTGAAACTTTCCGAACTTCTCAAGCACATATGTAGTATA-GTTCGGTGC-------AAAAA--------AAGACTCC-------AATCCTGTCGTCCTTGT--------------------GCA--CTTGACAAATGATTCA----TTTAAG--ACTAAAAGTTTGTC----------TTGGAAG-TGGAAACGTCTGGGGTGGTTGCAAAGTGAAA----AAAGAATAGGC----AAA-TGATGAGATATGTGAGCTT--------------TTTTGGAAATTCGAGGAA
s cb4.chrX              8753863 355 + 21540570 -------------------------------------------gaatgtgatgaaaagg---aaaaaaagaaaa------taaagaaaagaaTAGAGGAAGGGTTAGTGTGCATATCTGAAGCCTACTTGAC-A----AGGGCTCTCAGGAGTCAACGTCTCGTCAAAAGTGAAACTTCTCAAAC-------------AGATTATATCTTTTTGGGACGTATAGAGAGAATAGACAGTCAGACCCACATGAAG------ATGGCCCTTTT------------GAAGAGGTCCA--CTTGACAAATTATTCATCCTTTGAGATTaacagaagtttttttttcttacgtTTTAAAGAATGGAA-GTCTGTTACGTT----AGTTAAGA----AGGAAGGAAGATGCGAAA------GGATATGTGAGCCTTGACGATGAGCACATTTCAGAAACTTGAGAGA
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   756914 368 -  4500979 ----aaagggtAAATGTATCATTCAaatcttttggaaaaaaaagaatgcgatgaaaaga---aaaaaatagaaa------agaagaaaagaa-----gaaaagttagTGTGCACATCTGAAGCATACTTGACGA----AAAACTCTCAGGATTCAACGTCTTGTCAAAAGTGAAACTTCTCAAAC-------------AGATTATATA-TCTTGGTTC-------GAAAAAAGGCTGACAGAACTG---------------ggcttttttttgaagtcgtTAAAGGAGGACCATGCTTAACAAATAATTCA----CTGAAA--ACTAGAAGTTCGTT----TCACATTTGGAAG--TGAAACGCCTACGCCGGT-----GTTAAGACAacaagaaggaaga----aaatattttggatATGTGagcttt-------------ttctggaaatttgagtAA
i caeRem4.Crem_Contig0  C 0 I 424
s caeSp111.Scaffold630  5758276 346 + 20921866 --aaaaaggacaaATGTATCTGTGAAATCTTGCG-AACaaaaagattccgttgaaaaga---aaggagtaaaaa-------------agaaa-----gaagggtTAGACTGCACTTCTGAAGAATGCTTGACAA----GGGTCTCTCAAGAATCAACGTCTCGTCACAAGTGAAACTTCACAAAC-------------AGATTATATG-GTGTGcttg-------aaaac-----gaagagactTATAATATA----TTGtcgtctttttttaaagttctCAGG------ACA--CTTGACATATTATTCA----TTTCGG--ACCAAGAGTTCGTC----------TTGAAAA-CTAAACTTTTGACAGAAGTTGtaagtgaaaaaaacgaggaggaaga----aga-atttgAGATAC--------------------------GGAAATTCGAGGAA
i caeSp111.Scaffold630  C 0 I 219
s caePb3.Scfld02_0      2025724 372 +  4147112 agaaaaaggaCAAATGTatctttcaaatctttca----aagaagaatgcgttgaagagaaagaagaagtaaaaaatagaagaaagggaggaa-----gaagGGTTAGTCTGCACATCTGAAGAATACTTGACAAG---GGGGCTCTCAGGAATCAACGTTTC-------GTGAAACTTTTCAACC-------------AGATTATATt-gtgtgtttc-------aaaaaaatagaaggagaCTAATAGAAGAAAACTTCTCG------TTTGAAGTCCTTAGAGGTAGCACT--CTTGACAAATTATTCA----TCAAAG--ACTAAAAGTTCGTC----Ttacatttggaa----aaagtgtCTACGTCAGTTGCGagttgaagaatgaa-----aaaa----aaa-attaaggatATACGAGCATT-------------TTTGGGAAACTCGAG---
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=1092.000000
s ce10.chrX             3637475 8 + 17718866 AAACGTGG
s cb4.chrX              8754246 8 + 21540570 GAGGGTGA
i cb4.chrX              I 28 C 0
s caePb3.Scfld02_0      2026096 8 +  4147112 AAACGTGG
i caePb3.Scfld02_0      C 0 I 359
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5758622 219 + 20921866 I
e caeRem4.Crem_Contig0   757282 424 -  4500979 I

a score=376.000000
s ce10.chrX             3637483 88 + 17718866 ATGTTTGATATAACGAAAGTTGTAGCAATGATGTCACTTATAAGTTTAAGGT---------CTGAAAGTTTTATATGGAAATTGCTTAAACTATGTA
s cb4.chrX              8754254 85 + 21540570 ATCTTTGTCA-----------GTGGAAATGAGACTTTTTGAGTGTGTAAGGGAACTAGGAACTGCAAGACGTAAaaggaaaatattgaaatt-tgta
i cb4.chrX              C 0 I 122
e caePb3.Scfld02_0      2026104 359 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5758622 219 + 20921866 I
e caeRem4.Crem_Contig0   757282 424 -  4500979 I

a score=0.000000
s ce10.chrX             3637571 128 + 17718866 GCCGAATTTTTTCATTTACAATCAAAAGTGAGTTTTTTACTTTTATTTTCTTCAAATGATATGTTTCAGTAATGTTTTCATTTTTTTTTGTATTTTAACGGTAAAGTTAAGTAAGGAAACCCGCAAAG
e caePb3.Scfld02_0      2026104 359 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8754339 122 + 21540570 I
e caeSp111.Scaffold630  5758622 219 + 20921866 I
e caeRem4.Crem_Contig0   757282 424 -  4500979 I

a score=-3945.000000
s ce10.chrX             3637699 647 + 17718866  
s cb4.chrX              8754461 483 + 21540570  
i cb4.chrX              I 122 C 0
e caePb3.Scfld02_0      2026104 359 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e caeSp111.Scaffold630  5758622 219 + 20921866 I
e caeRem4.Crem_Contig0   757282 424 -  4500979 I

a score=0.000000
s ce10.chrX             3638346 4 + 17718866 TAGT
e caePb3.Scfld02_0      2026104 359 +  4147112 I
e caeJap4.Scaffold18142   64042 2894 +   343467 I
e cb4.chrX              8754944 0 + 21540570 C
e caeSp111.Scaffold630  5758622 219 + 20921866 I
e caeRem4.Crem_Contig0   757282 424 -  4500979 I

a score=65719.000000
s ce10.chrX             3638350 137 + 17718866 AACAAGAAACATTAGAGAAAC-----AAGTCG-TCAGT----CAAACGCCAAATGAAACAGAATACGATGATG-GCAGAAAAGAGGGGGGGAGTGGTGCAAGGCC------------------GGTT------GGATAGACAGGAAGAAACGTGGTTGGCTCTTTGAACGAC
s cb4.chrX              8754944 149 + 21540570 ---agaaacaatttggAGTGCACACGAAGACGACGTGTGTCAAAAACGCCGAATGAAACAGAATACGATGATG-G-------------------GGCGCGAGGCTCCTTGCTCCGCCGCGCGGGGTTTCTAACGGATAGACATGAAGAAACGTGGTTGGCTCTTTGAACGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   757706 120 -  4500979 AACACATAACATTAGCAGTAC-----AAGACGTTGAGT----CAAACGCCAAATGAAACAGAATACGGCAATGCG-------------------GGCGCGAGCCC------------------GGTT------GGATAGACAGGAAGAAACGTGGTTGGCTGTTTGAACGAC
i caeRem4.Crem_Contig0  I 424 C 0
s caeSp111.Scaffold630  5758841 119 + 20921866 AACACATAACATTAGCAGTAC-----AAGACG-CGAGT----CAAACGCCAGATGAAACAGAATACGATGATG-G-------------------GGCGCCAGTCC------------------GGGTT-----GGATAGACAGGAAGAAACGTGGTTGGCTCTTTGAACGAC
i caeSp111.Scaffold630  I 219 C 0
s caePb3.Scfld02_0      2026463 119 +  4147112 AACACATAACATTAGCAGTAC-----AAGAAG-TGAGT----CAAACGCCAAATGAAACAGAATACGATGATG-G-------------------GGCGCCAGGCC------------------GGTTG-----AGATAGACAGGAAGAAACGTGGTTGGCTCTCTGAACGAC
i caePb3.Scfld02_0      I 359 C 0
e caeJap4.Scaffold18142   64042 2894 +   343467 I

a score=63263.000000
s ce10.chrX             3638487 75 + 17718866 AGGAGAAATGTGATATGGACA---ACACCGCTCAATTTGGAATAATTCAGTGAGCT-----CCATGGACAAGGGTTTTTCTTG
s cb4.chrX              8755093 71 + 21540570 AGGGGAAATGTGATATGGACA---AGAGCGCTCAATTTGGAATAATTCAGTGAG-------CTTGGGACAAGGTTTTTCTG--
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0   757826 72 -  4500979 AGGGGAAATGTGATATGGACA---AGACCGCTCAAATTGGAATAATTCAGTGAGC------CCTGGGACAAGGTTTCTGAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5758960 72 + 20921866 AGGAGAAATGTGATATGGACA---AGACCGCTCAATTTGGAATAATTCAGTGAGC------CTTGGGACAAGGTTTCTGAG--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2026582 72 +  4147112 AGGAGAAATGTGATATGGACA---AGACTGCTCAATTTGGAATAATTCAGTGAGC------CCTGGGACAAGGTTTCTGAG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   66936 80 +   343467 aaaagaaatgcgATATGGAGACAGACGCCGCTTAATTTGGAACAATTCAGTGAGCCGCTTGCTGCGGATTAAGTTTTCCC---
i caeJap4.Scaffold18142 I 2894 C 0

a score=7936.000000
s ce10.chrX             3638562 9 + 17718866 AGAAGGAAA
s caeRem4.Crem_Contig0   757898 9 -  4500979 AGAAGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759032 9 + 20921866 AGAAGGAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2026654 9 +  4147112 AGAAGGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   67016 9 +   343467 agaagaaaa
i caeJap4.Scaffold18142 C 0 I 565
e cb4.chrX              8755164 55 + 21540570 I

a score=13316.000000
s ce10.chrX             3638571 51 + 17718866 TGG------CCGG-------------ACCCCGGTAACATAAAGAGCGTGTACGCCCGATTATTTGTTTTC
s caeRem4.Crem_Contig0   757907 63 -  4500979 CGG------GAGGGGACCTCCTATCTGCCACAATGACATCAAGAGAGAGGGTGCGTGcgtatttatttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759041 63 + 20921866 CGG------GAGGCCCCCCTTCTTTTGCCACAATGACATCAAGAAAGAGTGTGCGTGcgtatttatttt-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2026663 69 +  4147112 CGGGGAAGCGGGGGGCCCCTCCTTCTGCCACAATGACATCAAGAGCGAGTGTGCGTGcgtatttatttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67025 565 +   343467 I
e cb4.chrX              8755164 55 + 21540570 I

a score=2131.000000
s ce10.chrX             3638622 17 + 17718866 -TGAAAGGGAAATTACGT
s cb4.chrX              8755219 10 + 21540570 -CAAGAGGAAA-------
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   757970 11 -  4500979 tgaaggggaag-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759104 17 + 20921866 -tgagggGAAGACAACTT
i caeSp111.Scaffold630  C 0 I 150
s caePb3.Scfld02_0      2026732 17 +  4147112 -tgaggGGAAGACAACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67025 565 +   343467 I

a score=-33048.000000
s ce10.chrX             3638639 141 + 17718866 -----------GCACATTTCTATTTAAAGAACTTGGAAT-------------------------------------------------------------------------------TATATTTTTGATAATAACAATTAAAACTACTGAAACTGATCA---------GAAACATT-----------TCTGATAAATTATTCAAATACGCCTGTAATTTACAGAAGCCCTATGGTACTTTTA------------CCGCTTCT--------------
s cb4.chrX              8755229  65 + 21540570 AGTGAGGGGACGTGTGTCTTTAT---TGGAAATAAGAAC-------------------------------------------------------------------------------------ACAAAAAGGAAT-----------------------------------AAGACG------------------------------------------------------------------------------CCCAAATTAGC-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   757981  92 -  4500979 a---agaagacgccCCACTTTTT---TGCTCCTAAGAACTTTTTGCATGTAGAC------------------------------------------------------------------CAATTTAGAAAGAAAT---------------GTCtcactt---------gaaaaatt------------------------------------------------------------------------------catgaacTCGA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2026749 263 +  4147112 --------CCCGCTCCATTTTTTGTGTGCTACTTAGAGCTTCGGACATGTAGGacaattttttaacaaaatgaacttcttgaaaatttaatgAACCGAATGACGTCAGGGATCTAAGGTGCAACTCAGAGAGGGAGCGTGAAAAC-ACCGGGTTTGAATCGCTGTTACAGAAAGACTTAGTCTACAGTTCT--CAAACTGTTCAGAT---TTCTTAATCTATGGGTAGCACGTGTTACAATAGAAGTCCGTTTTCCTTATACTAGATACCTGATTCA
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18142   67025 565 +   343467 I
e caeSp111.Scaffold630  5759121 150 + 20921866 I

a score=-100649.000000
s ce10.chrX             3638780 345 + 17718866 CC--------------------ACTGTAATG-TAGATAAT---------GTAAATTTTAAAAATGGTGCCAAACATAACTAAAACCTGGTTTTGATGAAATATCAAAAACATACTTTTAATTAA--C---------AATTTGTTATTCGATCATAAATTTTTCGTTATTTCCTACTCCTGAACGTGAGGAATG---------------------CAATTTGCCTCAAATTAGAAAGCAG--------------------------------GTGGTTT---TTGTAATT---------TTATGTTAGT---TACGTTTGCATTTGATATTTGTCACTATAAAAT----------------------GTCTAC-TTTCAATTTTTGGAATTTA--------ACTG---------------------CAAAACATTCTAGCGTGCTGAAAACCAATAACAAGCTTCTCACGACATCTTCAAAATTTTCTTGGAAACCGGGAATCAAAG
s cb4.chrX              8755294 239 + 21540570 --------------------------------------TC---------TCAGtattaaagaat-----------------------ttttttcatcgcATGATACGA-------CTTGGCCAACGA---------AAC-------------------TTGTGTCTTTCTTTGA----AGATTGATGAGTATG------------------------------------ATGATTATGG--------------------------------ATGGCT----ATGGAAAC---------TTTtctgtctgtctgtctctgtgttt------------------------------------------gtgtgtacgtctgttttggaaatttacTTGAATAACTT---------------------CGGG----CGTTATGCATGAACCTTCAAAACTAAAAGTTTtaggaaacttt-----ttttttaggaGATT---ACTCAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   758073 235 -  4500979 --------------------------TGACGTTGGTTGTC---------TCGGTTTTTTGGA-------------------------TATTGTGACCACAGAGAACAA---------TAATCAA--A---------AAC------------------GTTCTGTGATATTTGGA----AGAGTGA--------------------------------------------------ATTG--------------------------------ATGG------AGCCAAGT---------TTAGCTCT-----TAACGtagtgtttt------------gaaaaaa----ag----------------gtctTCAACTCCTTCTGGAATATTTAAT------ACTC---------------------CATGTT-CCGTTACACACTGAAAGCAGATTTTTATAATcttacaaaatttc-----tctccAGGGAAATC--GAGTCATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759271 230 + 20921866 ----------------------ACTGTGATAATAGCACAC---------CCATAacttgaaaaga--------------------------------agaagattaaA---------TAATAAG--A---------GATTGAA--------------------------TTAGACTCCGGCATGAAACAAGTG------------------------------------------TTAGCAT-----------------------------ATCTTC----CAAAGAAT---------TCAGGT-------TTC--ATTTATTTG-------------TAGAAC----AGAACACATTTCAAGCCCGTTcaaattttccgttttgatgttttga------attc---------------------caaaGT-----------TTTGACACGGCATAAGGGAA---CCAAATGCTTT-----TGTTTACCAAAGTT-----------
i caeSp111.Scaffold630  I 150 C 0
s caePb3.Scfld02_0      2027028 436 +  4147112 TCACGAAGAATAAGACAATCAGACAGTATCAATAGAtcacaacatttttcaaaaactcaaaaatgttcccg----------------tattctgat-aaatgatttaa---------aaatcaa--aaaatcttacaaCTGAAAGTC---TTCCTAGCAGGTGATACTCTTAGAGTTTGGGTTGATCTGAATGGATCCTTTCCGTCTCCACCCAATTCCCGCctcgtttttgaattttgtatttAGAAGGATTAGATCCAAATCAcgagaaatattcaaatcaaaaaatgttatagTATCAGGTGACTCGGTTCGAATGTatttt------------ctagagcttttagcacacaattttatttcttttaaaatacatttttgagcatttttt------attCGGGTTCATgaatcaaaacaaacaaaac-taaTAACATGTTCATCACGacatcctgaaaatttcaa----tat-----ttgtcACGAAAGTT-----------
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18142   67025 565 +   343467 I

a score=25557.000000
s ce10.chrX             3639125 192 + 17718866 TTTTCTGCGTTGCAAGTCCCTTA---CGCAAATATTGAAAATAATTT-----ATTTCAAATTGAG----------------GT---------------TTTTTTTTTCATTA----AATCAAGGAAGA-GCCCAACTCCAAA-TGAAAATGATATTTTCTGAATGTTTACTCAGAATACATCTTTGGAGTTTATCCTCCAGTTGAATGAA--------TTTTCAAGAATGAACAGGAGGT--GAATT
s cb4.chrX              8755533 191 + 21540570 -------------------AACA---CGCCAACCTTGCAAATAATTT-----ATTCCAAATCATGATATTTCATTa--aatgcttcttcttctttctttttttttttgaaaaatataaccacaacaaa-attttactccaaacaaaaataagaaattttctGACTA----CTGAAAAGTTCTGCTGGAGTTATTCATCAAGTTG-------------------AGGGACAGGTGAAACGA--AATT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   758308 201 -  4500979 TT-----CATT-TGAATTCAACA---CGCAAACCttcgaaataattt-----atttcaaatcgAGACATTTTATTACCAGagc-----------gagttttttttctcagga--acaacaaaaataaa------actccaaaatgaaaacgaagatTTCTAAATTG----TCAGAAAACTTCTTTGGAGATTTCAATTACgttgt-----ttcagat-tttatatTGACAGGTGAAAGTA--GAAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759501 216 + 20921866 -------CACT-TTAGTTCCTCA---CGCAATCCTtggaaataatttatttcatttcaaatcaagATATTTCATTA-----gc-----------gagtttttt-tctatttacgTAAACCACCAAAAA-GTTAAActccaaattgaaaatgaaactttctGAATGTTTACTCAGAAGGCTTCTTTGGAAGTTTTGCTTT--CTGGccaaaattagatttttctgaaaacaggTGAAAAGACGACgtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2027464 215 +  4147112 -------CTTT-TTGGTTCCACA---CGCGATCCttggaaataatttatttcatttcaaatcaaGACATTTCATTA-----gc-----------gacttttttcttcaatgatGTTAACCAACAAAAGCGAAAAactccaaa-tgaaaatgaaactttctgAATGTTTACTCAGAAGGTTTCTCTGGAGTTTTCTCTTA--TTGGATCTATTCAGATATATCCGGAAGCAGGTGaaatga--aagtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   67590 212 +   343467 tttatttcttt-cCAATTCCGTAACCCGTTAACCTCaagaataattt-----atttgaCATCAAGAC-TTTCATTA------T-----------GTGATTTTTGTTTGTCGATTAGGACCGACGAAAAGGTCAAACTCCAGA-TAAGAAGGAAAACTTCTGAATTAAAAGTCAGAAGTCATCTCTGGAGTCGTGTTTAGGGCTAA--------AAATAAGAGTAAAAACGTATGAGAAGTT-GAGC-
i caeJap4.Scaffold18142 I 565 I 65

a score=312.000000
s ce10.chrX             3639317 53 + 17718866 TTAAAACTTT--TTAGACTA----TGTTAATTCTAAATTTGAAA-CAATTGAGAAG------------------TTGA
s cb4.chrX              8755724 48 + 21540570 ------------GTATTCTGGTGTTTTGGGttctaa-----aaa-tatatgaaaaaaagttt------------ttga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   758509 46 -  4500979 ----------AGGTAGTCTA----TATGAATTCTAA-----AAT-AGTATGTGAAA---TTTA---------AATTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5759717 55 + 20921866 taaaaatgtttgataGACTA----Aatgaattctaa-----aaa-tatacGGGAAA---TTGG----------GTTGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2027679 65 +  4147112 caaaaatagtaGGTA-ACTA----AATGAGTTCTAA-----AAAgtatttgagaaa---ttttttgaattatcattGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67802 65 +   343467 I

a score=144958.000000
s ce10.chrX             3639370 342 + 17718866 -----GC-AAAACATAACTAGTAGGA----------------AAAACGAG---------TTATTTGGGAA-----------------AAATTGGGGGAAAATATG---AATC--AAAAAGAATGAATGACAGAAGGCAAGTGTGA---GTTTTTT-----ATGATTATTTTTATT------TATTGA---TTATAATCCT---TCACTGGAAATAAATTCTTCCAATTGATAATGACTGAGGAAGTGAGCCCAATCGACGTCTTTTGCTCTGAATTTACATTTTTA-------GAATTTTTGTAAAATT------TTCCCGGATAGTTCTTGAAAACTTACATTTGCAGTTTGGAAACATTACTCTGAGTGCAGAATGCATCGGTTTTGTAGTGACAAGTTTTATGGCATACCATTTTGCAGTCTGAA
s cb4.chrX              8755772 354 + 21540570 -----gcaa------aactagtaggtttttgaggtttttttcgGTATGag-----------ttttgataa----------aatttctaaatcgagaattaagaaa---------aatatgaatgaaTGACAGACGGCAAGCGTAATTGTTTcttcaatatattttttgatttatatttttcatagtt---ttataGTCCT---TCGCTGGAGATGAATTCTTCTAATTGGTAATGACTAAGGTAGTGTGCCCAGTCCACATCCTTtgcactgaaaataaaaactta---taCAGGAAACTTAGAAATAC------TTT------------------CTTACATTTGCAGTTTGGATACAGTACTCTGCGTGCAGAAGGCGTCGGTTTTATAGTGGCATGTCTTGTGGCACACCATTTTGCAGTCTGAA
i cb4.chrX              C 0 I 369
s caeRem4.Crem_Contig0   758555 314 -  4500979 -----GC-A------AACTAGTAGGAGTTTGGtgaat-----gaaatggg-----------aaatgataa-------------------------gaacaaaata---------tgaatgaatgaatgacagaaggcaagtatga---------------atCAATTGATTGACG------GAAAGT---TTAGAGCCCT---TCGCTGGAAATGAACTCCTCCAATTGGTAATGACTAAGAAAATGAGCCCAATCGACATCCTTCGCtctaaaaattaagaatta---tCTCAATTccttaaaacaat------tttc----------------acgCACATTTGTAGTTTAGACACGGTACTCTGTGTGCAGAAGGCATCGGTTTTATAGTGACAGGTCTTGTGGCATACCATTTTGCAATCTAAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5759772 322 + 20921866 -----GC-A------AACTAGTAGGAGTTTGAGA--------GAAATTG---------------TGATAt------------------aatggagaaaagaaaca---------tgaatgaatgaatgacaGAAGGCAAGCGTGA---GTTTT------GGTTATTATTGGTAAG------TAGGATTTGTTAGAGTCCT---TCGCTGGAAATGAACTCCTCCAATTGGTAATGGCTAAGAAAGTGGGCCCAGTCGACATCTTTCgctctgaaaaacaaatcttC----ACATTAGCATTATTAGCTT------TTCA----------------ACTCACATTTGCAACTTTGAAACTGTACTCTGCGTGCAGAAGGCATCGGTTTTGTAGTGACATGTTTTGTGACACACCATTTTGCAATCTGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2027744 357 +  4147112 -----GC-A------AAGTTATATGA-TTCAaag--------gtgatga---------------tgatggtggtt-taaaaaattggaaacgggggaaaaatatg---aatggttgaatgaatgaatgacagAAGGCAAGCGGgt---gtttttcaatgagtttttatGATAATG------AAACAT---TTAGAGTCCT---TCGCTGGAAATGAACTCCTCTAATTGATAATGACTAAGGAAATGAGCCCAATCCACATCCTTTGCACTGAAATGATGGTTTTTAAAGATAATTGCTTTAAAACTTTCCTAGGTTTC----------------ACTtacatttgaagttttgatacAGTGCTCTGTGTGCAGAAGGCATCAGTTTTGTAGTGACATGTCTTATGACAGACCATTTTgcagtctgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   67867 369 +   343467 GGAAGac-a------aaatatcagaa----------------aaaatggtAATTGGCCAGCAAGTAGTAGTAGTTGTAGTAGCAgaaagttggaaggaaaatatggaaaataaggaaagaaatggggaagggaaggcaagcgaga---------aaatgaatACATTCAATAGAA------AAATCA---TTAAAGTCCTCCCTCGCTGGAAATGAACTCTTCCAATTGATAATGGCTCAAAAAGTGCGCCCAATCCACATCTTTGGCGCTGTAATTTGAATTTAA---------TTATATACTATCAT------TTCT---GAATTAAATAAAGACATACATTTGAAGTTTGGATACAGTACTCTGAGTGCAGAACGCATCGGTTTTGTAGTGGCATGACTTGTGGCACACCAATTTGcagtctgaa
i caeJap4.Scaffold18142 I 65 C 0

a score=-6796.000000
s ce10.chrX             3639712 29 + 17718866 -AAAAATTACGTGTATCTAACAACACATTC-
s caeRem4.Crem_Contig0   758873 18 -  4500979 -ATTCAT-----------AATAACAGATAA-
i caeRem4.Crem_Contig0  I 4 I 15
s caeSp111.Scaffold630  5760094 19 + 20921866 -ATAGAT----------CCATTATCAATTT-
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      2028101 19 +  4147112 -aataat----------tatttagaGATCT-
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142   68236 31 +   343467 aattaaaatcgtgTGTTCACAGAAAAAGTTC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8756126 369 + 21540570 I

a score=153580.000000
s ce10.chrX             3639741 214 + 17718866 CACAAAAGTACCTCTGCACTGATAAGCTTGCTTGGAAAAACTGCTTCGAATCCTTTGCTGGCACACATTGCACGTGGCACCGCTGCAACTAACATTAGTATCGTGTTTTTTG-ACTTT-AACATAAAG--TGAAACAGGACAAA------------GACGATACAAG------TGAGGACACT-----------------CGAATAAAATTATTACCCTTTTACTTTGACGGCAACAAATGTATGATCGTTGT
s cb4.chrX              8756495 231 + 21540570 CATGTAATCACCTCTACACTGATAAGCTTGTTTCGAGAAACTGCTTCTGATCCGCTGCTGGCAAACGTTGCACGTTGCTCCGCTGCAACTAACATTAGTATCGTG-TTTTGGAAAACA-AACATAAAATGAGACGCAGGACCAAATTGGACACAAAACAAAATGAGC------ATTACACA--------AGACA------GCAGAGAAATGTTTACCCTTTAACTTTGACTGCCACAAATGTGTGATCGTTGT
i cb4.chrX              I 369 C 0
s caeRem4.Crem_Contig0   758906 230 -  4500979 CAACTACATACCTCTACATTGATAAGCTTGTTTTGAGAAGCTGCTTCGAATCCTCTGTTGACAGACGTTGCACGTAGCTCCGCTGCAACTAACATTAGTAtcgtg-tttttg-aaaca-aacatAAAA--GGACGC-GGaccaa-----aaaaaagacaaaaacaga------aTTAGACATT------GGACACTGcttgaaagaaaatgtttacCCTTTCACTTTGACGGCGACAAATGTGTGATCATTGT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5760124 222 + 20921866 ATAGGGTTTACCTCTGCATTGATATGCTTGCTTTGAGAAGCTGCTTCGAATCCTTTGTTGACACACATTGCACGTGGCACCGCTGCAACTAACATTAGTATcgtg-tttttg-aaatc-aacaTAAAA--GGACAC-GGACCA-------------AGACACACAAATGATACAATGGacaag------aaaag------gaaatgaaatgtttacCCTTTAACTTTGACTGCCACAAATGTATGATCATTGT
i caeSp111.Scaffold630  I 11 I 2
s caePb3.Scfld02_0      2028129 228 +  4147112 ataattttcacCTCTGCACTGATATGCTTGTTTTGAGAAGCTGCTTCGAATCCTTTGTTGGCACACATTGCACGTGGCACCGCTGCAACTAACATTAGTatcgtgttttttg-aaaca-aacataAAA--AGGACT-GGACCAATAACAAGACATGAGAAACACAAA------AACGGACATT--------AAG------GAAATGAAATGTTTACCCTTTCACTTTAACGGCCACAAATGTGTGATCATTGT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142   68267 219 +   343467 AACCCGATTACCTCTACACTGATAAGCCTGCTTCGAGAAACTGCTTCGGATCCTCTGTTGGCACACATTGCAGTTCGCGCCACTGCAACTAACATTAGTATCGTG-TTTTGG-GAACAGAACATAAAT--GGGACAGGGACAGG------------------ACGAC------ACTTGACAcacgacaaaaaaa------tgaacaaaaattttaccCTTTCACTTTAACCGCCACAAATGTGTGATCATTGT
i caeJap4.Scaffold18142 C 0 C 0

a score=1910.000000
s ce10.chrX             3639955 2 + 17718866 AG
s cb4.chrX              8756726 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   759136 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2028357 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   68486 2 +   343467 AG
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5760346 2 + 20921866 I

a score=38424.000000
s ce10.chrX             3639957 41 + 17718866 ATGTGAAGTTTCTTTCCTTTCCTCATTAATCGAGATGCAGC
s cb4.chrX              8756728 41 + 21540570 ATGTGCAACTTCTTCCCTTTTCTCATCAACCTCGCCGCGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   759138 41 -  4500979 ATGTGCAGTTTCTTGCCTTTTCTCATCAAACGGGAAGCGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5760348 41 + 20921866 ATGTGCAacttcttcccttttctcaTTAGTCGAGATGCGGC
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2028359 41 +  4147112 ATATGaagtttctttccttttctcatcAATCTACTTGCAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   68488 41 +   343467 ATGTGAAGTTTCTTTCCTTTTCTCATCAATCGAGCAGCAGC
i caeJap4.Scaffold18142 C 0 C 0

a score=26369.000000
s ce10.chrX             3639998 45 + 17718866 TGGCTCATTGAGCATTGCTGGAGGGATGAGGAAGTATCTGGAAAA
s cb4.chrX              8756769 45 + 21540570 TGGCTCATTGAGCATTGCTGGAGGGATCAAGAAGTATCTGAATAA
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   759179 35 -  4500979 TGGCTCATTGAGCATTGCTGGAGGGATCAAGAAGT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5760389 45 + 20921866 TGGCTCATTCAGCATTGCTGGAGGAATCAGGAAGTATCTGGAAGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2028400 40 +  4147112 AGGCTCATTGAGCATAGCAGGAGGGATCAGGAAGTATCTG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68529  0 +   343467 C

a score=-2065.000000
s ce10.chrX             3640043 11 + 17718866 GTTTAAGAATA-------
s caeRem4.Crem_Contig0   759214  6 -  4500979 --------ATCTGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5760434 11 + 20921866 -------AATGAGAAATA
i caeSp111.Scaffold630  C 0 I 20
e caePb3.Scfld02_0      2028440  0 +  4147112 C
e caeJap4.Scaffold18142   68529  0 +   343467 C
e cb4.chrX              8756814 31 + 21540570 I

a score=-3877.000000
s ce10.chrX             3640054 64 + 17718866 AATTAAAAGTTTAAGAATAAAGTGTTGAAACTTTTTGGCAAACTTTTAACAGTTTTTGCCAGTT
s caeRem4.Crem_Contig0   759220 13 -  4500979 ----------------------------AAGGATGATAcaa-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2028440 22 +  4147112 ---------------------------AAACTTTTATGCACATTCATAA---------------
i caePb3.Scfld02_0      C 0 I 24
e caeJap4.Scaffold18142   68529  0 +   343467 C
e cb4.chrX              8756814 31 + 21540570 I
e caeSp111.Scaffold630  5760445 20 + 20921866 I

a score=-1791.000000
s ce10.chrX             3640118 76 + 17718866 TGGCTAGAGGCGCAAGAGCTCTAAAGATGCTCTGTTTTGCTAAATAGAAGATGCGCCTGCCTTTCCACATTCGCAA
s caeJap4.Scaffold18142   68529 14 +   343467 TGGCTCAGTGAGCA--------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2028462 24 +  4147112 I
e cb4.chrX              8756814 31 + 21540570 I
e caeSp111.Scaffold630  5760445 20 + 20921866 I
e caeRem4.Crem_Contig0   759233  0 -  4500979 C

a score=-8345.000000
s ce10.chrX             3640194 149 + 17718866 TGCATAGCGCTTACTATTAGGATCGAACTTCAAACCATTCAATTTGAACTGACATATTCTCAGAAAAATTTTTAAACTCAACAAAATAGGATTTTAAAGAAC------AATTATTCTTCAGTTCATAATTTACTTTTTTAAAGTTATGATAATGC
s caeRem4.Crem_Contig0   759233  24 -  4500979 taca-------------------------------------------------------------------------------------------aaagaa------------------aattcataa-----------aCAGT-----------
i caeRem4.Crem_Contig0  C 0 I 5
s caeJap4.Scaffold18142   68543  60 +   343467 ----------TTGCTGGTGGAATC-----------------------------------------------------------------------AAGAAATATCTGAAATTATGGCTTATTTGATGATATA-------AAAGTTACG-------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2028462  24 +  4147112 I
e cb4.chrX              8756814  31 + 21540570 I
e caeSp111.Scaffold630  5760445  20 + 20921866 I

a score=0.000000
s ce10.chrX             3640343 42 + 17718866 AACCTTTAAGAAAATGTTGATGTAACCAAACTAATATTTTCT
e caePb3.Scfld02_0      2028462 24 +  4147112 I
e caeJap4.Scaffold18142   68603  0 +   343467 C
e cb4.chrX              8756814 31 + 21540570 I
e caeSp111.Scaffold630  5760445 20 + 20921866 I
e caeRem4.Crem_Contig0   759257  5 -  4500979 I

a score=0.000000
s ce10.chrX             3640385 20 + 17718866 GAAACTTCTTGTGTAATCAA
e caePb3.Scfld02_0      2028462 24 +  4147112 I
e caeJap4.Scaffold18142   68603  0 +   343467 C
e cb4.chrX              8756814 31 + 21540570 I
e caeSp111.Scaffold630  5760445 20 + 20921866 I
e caeRem4.Crem_Contig0   759257  5 -  4500979 I

a score=808867.000000
s ce10.chrX             3640405 1113 + 17718866  
s cb4.chrX              8756845 1182 + 21540570  
i cb4.chrX              I 31 I 182
s caeRem4.Crem_Contig0   759262 1220 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5760465 1187 + 20921866  
i caeSp111.Scaffold630  I 20 I 13
s caePb3.Scfld02_0      2028486 1193 +  4147112  
i caePb3.Scfld02_0      I 24 I 13
s caeJap4.Scaffold18142   68603 1126 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=301101.000000
s ce10.chrX             3641518 423 + 17718866 --------------GTTATTTGGTATTCCATACAAATCAAAAGTTTCCTCCCAAAACGGATTTGCATTGATTCCCTTTGTGGTTGAGTATTTTTGAGCTGGCTCATCCATTTCAACATTTACAAACGGTTGAGAAACTTCTCTCCCAAGGCGACTTGCTTTGATGACTTTGATTCGCATTTTATTTGGAATAGAATTTGTGTTATAGGATGGACTGATCAACTGAAACAACCA----TTTAAAAAATGAAATTCAATT----ATAATGGTTAATGGACTTAAAACTC------ACATGAGATTCGTTTAATTTTTTGAACATCTCAGGAACATCCCCAGATGGACTATTGCTTCTATGAGAAGATTGGGTACCATAAGCGTCCACGTGAAGGTTGGTG------TCATAGTTGTTGTACGAGTTGCGCATTGTTCCAGATGGGGAATGGGTCtaaaa
s cb4.chrX              8758209 414 + 21540570 --------------TTAGGTTTCAATCACTCACAAATCGAAAGTTTCTTCCCAGTACGGATTAGCATTGATTCCTTTTGTCGTTGAGTATTTTTGAGCGGGCTCGTCCATCTCAACATTCACAAACGGCTGGGAAACTTCCTTCCCAAGACGGTTCGCTTTGATAACTTTGATTCTCATTTTGTTCGGAATAGAATTGCTGTTGTAGGATGGGCTGATCAactgaaaaccgaa-------aaa---------ccgATTCAGAAAAGTTTCTG-------TAAAACTT------ACATGAGATTCGTTAAGCTTCTTGAACATTTCAGGAACATCTCCTGATGGACTGTTGGATCTGTGATTCGAATGGTTGTTGTAAGAGTCGACGTGAAGATTCTGTTGTTGATCATAGTTGTTATAAGAGTTGCGCATGGTTCCGGCTGGGGAGTGGGTCTGaaa
i cb4.chrX              I 182 I 32
s caeRem4.Crem_Contig0   760482 407 -  4500979 ---------------cagatttGAA--ACTCACAAATCGAATGTTTCCTCCCAATACGGATTAGCATTGATTCCTTTAGTTGTCGAGTATTTTTGAGCTGGTTCATCCATTTCAACATTCACGAATGGTTGTGAGACTTCCTTCCCAAGACGGTTTGCTTTGATAACCTTGATTCTCATCTTGTTAGGAATTGAGTTGGTGTTGTAGGATGGGCTTATCAACTGAAATCTCTA----TTTACA---------CTGATT---AACAGTCCACGA-----ATAAATCTC------ACATGTGATTCGTTAAgctttttgaacatttccggAACATCTCCGGATGGACTATTGCTTCTGTGAGAGGAGTGGGTACCATAAGAATCGACATGAAGATTATTT------TCGTAATTATTGTAAGAGTTGCGCATAGTTCCGGCTGGTGAGTGGGTCTGAGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5761665 402 + 20921866 --------------ACaa-gtgaaa--acaaacaaatcgAAGGTTTCTTCCCAGTATGGATTAGCATTGATTCCTTTTGTGGTCGAATATTTCTGAGCTGGTTCATCCATTTCAACGTTCACAAATGGTTGAGATACTTCTTTGCCAAGACGATTAGCTTTGATAATCTtgattctcattttgttcGGAACAGAATTGGTATTATAAGATGGGCTGATTAACTGAAAGCTGTC-------AGA-----------AATT----ATAAGGTATTATTG-TATTTAACCA------ACATGGGATTcgttgagttttttgaacatttcagGGACATCTCCAGACGGACTGTTGCTTCTGTGAGAGTTATGAGTACCGTATGAGTCAACGTGAAGATTGTTT------TCATAGTTGTTGTATGAGTTACGCATGGTTCCGGATGGGGAATGGGTCTT---
i caeSp111.Scaffold630  I 13 C 0
s caePb3.Scfld02_0      2029692 404 +  4147112 --------------acactgaaaaa--actcacaaatcaaaaGTTTCCTCCCAGTATGGATTAGCATTGATACCCTTTGAAGTAGAATATTTCTGAGCAGGCTCATCCATTTCAACATTGACAAATGGCTGGGACACTTCCTTTCCAAGACGGTTCGCTTTGATCACTTTGATTCTCATCTTATTTGGGATCGAGTTGGTATTGTAGgatggggtgatcaactgaaatt--------------------------aTT----ATGGTGTACGGGAG-CATAAAACAGATAGTTACATGAGATTCGTTCAGTTTCTTGAACATTTCGGGTACATCTCCAGAGGGACTGTTGCTTCTATGGTTGTTGTGAGCTCCATAAGAGTCAACATGAAGGTTGTTA------TCATAGTTGTTGTAAGAGTTACGCATGGTTCCAGATGGGGAGTGAGTCTAGAA
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18142   69729 422 +   343467 TTAATTGCTTTTCAAGATAAAGAAA--ACTCACAAATCAAACTGTTCTTCCCAGTATGGATTTGAATTTATTCCCTTTGATGTTGAATACTTTTGAGCTGGTTCATCAATTTCCACATTCACAAATGGCTGGGAAACTTCTTTACCAAGACGACCTGCTTTAATGATTTTGATTCTCATCTTGTTCGGAATTGAGTTCGCGTTGTAAGATGGGCTGATTAACTTAAAAAAGtaacaattttta---------ataatt----aaaaTGGGTG-----TTTGATACTT------ACGTGAGATTCGTTCAACTTCTTAAACATTTCAGGAACTTCC---GATGGACTATTGCTTCTATGAGAAGACTGAGTAccatatggatccacgtgaaGGTTCGAG------TCGTAGCCGTTGTAAGAGTTACGCATGGTTCCGTTCGGGGATTGAGTCTTAAA
i caeJap4.Scaffold18142 C 0 I 36

a score=642.000000
s ce10.chrX             3641941 5 + 17718866 aaaat
s caeRem4.Crem_Contig0   760890 5 -  4500979 Gggat
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2030096 5 +  4147112 GAAAT
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold18142   70151 36 +   343467 I
e cb4.chrX              8758623 32 + 21540570 I
e caeSp111.Scaffold630  5762067 0 + 20921866 C

a score=1265.000000
s ce10.chrX             3641946 14 + 17718866 taaatttaaattta
s caeRem4.Crem_Contig0   760895 14 -  4500979 tgaaaatagtttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762067 14 + 20921866 CAAATCTTATTTTA
i caeSp111.Scaffold630  C 0 I 2
e caePb3.Scfld02_0      2030101 33 +  4147112 I
e caeJap4.Scaffold18142   70151 36 +   343467 I
e cb4.chrX              8758623 32 + 21540570 I

a score=91.000000
s ce10.chrX             3641960 1 + 17718866 a
s caeRem4.Crem_Contig0   760909 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 6
e caePb3.Scfld02_0      2030101 33 +  4147112 I
e caeJap4.Scaffold18142   70151 36 +   343467 I
e cb4.chrX              8758623 32 + 21540570 I
e caeSp111.Scaffold630  5762081 2 + 20921866 I

a score=0.000000
s ce10.chrX             3641961 571 + 17718866  
e caePb3.Scfld02_0      2030101  33 +  4147112 I
e caeJap4.Scaffold18142   70151  36 +   343467 I
e cb4.chrX              8758623  32 + 21540570 I
e caeSp111.Scaffold630  5762081   2 + 20921866 I
e caeRem4.Crem_Contig0   760910   6 -  4500979 I

a score=182.000000
s ce10.chrX             3642532 2 + 17718866 TA
s caeRem4.Crem_Contig0   760916 2 -  4500979 TA
i caeRem4.Crem_Contig0  I 6 C 0
e caePb3.Scfld02_0      2030101 33 +  4147112 I
e caeJap4.Scaffold18142   70151 36 +   343467 I
e cb4.chrX              8758623 32 + 21540570 I
e caeSp111.Scaffold630  5762081 2 + 20921866 I

a score=-913.000000
s ce10.chrX             3642534 10 + 17718866 TAATAAAGTC-
s caeRem4.Crem_Contig0   760918 10 -  4500979 TCATACAACT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762083 10 + 20921866 -tattgaaatc
i caeSp111.Scaffold630  I 2 C 0
e caePb3.Scfld02_0      2030101 33 +  4147112 I
e caeJap4.Scaffold18142   70151 36 +   343467 I
e cb4.chrX              8758623 32 + 21540570 I

a score=-1442.000000
s ce10.chrX             3642544 3 + 17718866 --AAT
s cb4.chrX              8758655 4 + 21540570 -AATT
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   760928 3 -  4500979 --TAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762093 5 + 20921866 aagaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2030101 33 +  4147112 I
e caeJap4.Scaffold18142   70151 36 +   343467 I

a score=-4832.000000
s ce10.chrX             3642547 6 + 17718866 -----TAACT-C
s cb4.chrX              8758659 5 + 21540570 -----TTCCT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   760931 5 -  4500979 -----TACTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762098 6 + 20921866 -----tATCTA-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   70187 6 +   343467 taaaat------
i caeJap4.Scaffold18142 I 36 C 0
e caePb3.Scfld02_0      2030101 33 +  4147112 I

a score=649981.000000
s ce10.chrX             3642553 768 + 17718866  
s cb4.chrX              8758664 785 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   760936 807 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762104 793 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2030134 803 +  4147112  
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold18142   70193 809 +   343467  
i caeJap4.Scaffold18142 C 0 I 92

a score=9980.000000
s ce10.chrX             3643321 20 + 17718866 CAACACCGTTTCTGAAAAGA
s cb4.chrX              8759449 19 + 21540570 -TGCACCTTTTCTAGAATAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   761743 19 -  4500979 -Cgcatcttttctgaaaaaa
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold630  5762897 20 + 20921866 CTGcatcttttctgaaatat
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2030937 20 +  4147112 CAGcatcttttctgaaaagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   71002 92 +   343467 I

a score=1818.000000
s ce10.chrX             3643341 4 + 17718866 TATT
s cb4.chrX              8759469 4 + 21540570 TATT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5762917 4 + 20921866 tatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2030957 4 +  4147112 tgtt
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18142   71002 92 +   343467 I
e caeRem4.Crem_Contig0   761762 28 -  4500979 I

a score=302.000000
s ce10.chrX             3643345 2 + 17718866 CT
s cb4.chrX              8759473 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5762921 2 + 20921866 tt
i caeSp111.Scaffold630  C 0 I 30
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e caeRem4.Crem_Contig0   761762 28 -  4500979 I

a score=348.000000
s ce10.chrX             3643347 6 + 17718866 GAGTAC
s cb4.chrX              8759475 6 + 21540570 CAGTAC
i cb4.chrX              C 0 I 34
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e caeSp111.Scaffold630  5762923 30 + 20921866 I
e caeRem4.Crem_Contig0   761762 28 -  4500979 I

a score=0.000000
s ce10.chrX             3643353 38 + 17718866 TGTGAGGTTTAAGCAATAAATGTTTTGGGCTGCGTCCG
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e cb4.chrX              8759481 34 + 21540570 I
e caeSp111.Scaffold630  5762923 30 + 20921866 I
e caeRem4.Crem_Contig0   761762 28 -  4500979 I

a score=-2941.000000
s ce10.chrX             3643391 684 + 17718866  
s cb4.chrX              8759515 595 + 21540570  
i cb4.chrX              I 34 I 78
e caePb3.Scfld02_0      2030961  16 +  4147112 I
e caeJap4.Scaffold18142   71002  92 +   343467 I
e caeSp111.Scaffold630  5762923  30 + 20921866 I
e caeRem4.Crem_Contig0   761762  28 -  4500979 I

a score=0.000000
s ce10.chrX             3644075 34 + 17718866 TCAGTGCTTTTTGTAATTGTGTTTCAACCAGTAG
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e cb4.chrX              8760110 78 + 21540570 I
e caeSp111.Scaffold630  5762923 30 + 20921866 I
e caeRem4.Crem_Contig0   761762 28 -  4500979 I

a score=489.000000
s ce10.chrX             3644109 19 + 17718866 ACTTTATC-----TGTAGACTTCA
s caeRem4.Crem_Contig0   761790 23 -  4500979 ACTTTATCAAATTTGTA-ACTACA
i caeRem4.Crem_Contig0  I 28 C 0
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e cb4.chrX              8760110 78 + 21540570 I
e caeSp111.Scaffold630  5762923 30 + 20921866 I

a score=-218.000000
s ce10.chrX             3644128 24 + 17718866 CGTCCTTTTTGATCTCCAACTC--TC
s cb4.chrX              8760188 24 + 21540570 tgtcatttttattCTGTTTCTT--TC
i cb4.chrX              I 78 C 0
s caeRem4.Crem_Contig0   761813 12 -  4500979 --------------TGTTCCTTGGTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I
e caeSp111.Scaffold630  5762923 30 + 20921866 I

a score=613.000000
s ce10.chrX             3644152 2 + 17718866 TC
s cb4.chrX              8760212 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   761825 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762953 2 + 20921866 TC
i caeSp111.Scaffold630  I 30 C 0
e caePb3.Scfld02_0      2030961 16 +  4147112 I
e caeJap4.Scaffold18142   71002 92 +   343467 I

a score=-997.000000
s ce10.chrX             3644154 11 + 17718866 ACCATCAAATT
s cb4.chrX              8760214  8 + 21540570 GCACCTCG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   761827 10 -  4500979 -CAACTCAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762955 11 + 20921866 ATTACTAAACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2030977 11 +  4147112 ACCACCGAGTT
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18142   71002 92 +   343467 I

a score=615242.000000
s ce10.chrX             3644165 1200 + 17718866  
s cb4.chrX              8760222 1209 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   761837 1152 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5762966 1126 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2030988 1124 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   71094 1177 +   343467  
i caeJap4.Scaffold18142 I 92 I 291

a score=-18480.000000
s ce10.chrX             3645365 115 + 17718866 GAAAAGTGACGGTTACGTATGTAGTTTATGCATAATGTTCCTTTAAAATGGGTACTTGTGTAGTAGATCCCCACATATTGAGAAAAAAAACTAGTGTTTCTGGTATG---AATCTC-------GA---
s cb4.chrX              8761431 114 + 21540570 TTTGAATTACGGttaattttattatttttttgaa------cctcaatgtttcagtttttgtgctatgtgat--tgtttccaaaaaaa------ttgattttaatatACTGTATTTCTCTCATAAAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   762989  30 -  4500979 ------------------------------------------------------------------------------caacaaaaa------gtgattCTGA-------AGTTTC-------AAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5764092  29 + 20921866 ------------------------------------------------------------------------------caaagaaaaaa----gtgatcttGA-------AGTCTT-------GA---
i caeSp111.Scaffold630  C 0 I 33
s caePb3.Scfld02_0      2032112  32 +  4147112 ------------------------------------------------------------------------------caaaaacaagaact-aTGATCCTGA-------ACTTTG-------AA---
i caePb3.Scfld02_0      C 0 I 84
e caeJap4.Scaffold18142   72271 291 +   343467 I

a score=-8427.000000
s ce10.chrX             3645480 72 + 17718866 ATATTTATCTCCATTATTTCTGCCAATAGCTTTAGAAATTATATTTTC---AAAATCCTAATAGTGCTACTAGTG
s cb4.chrX              8761545 64 + 21540570 CCACTTATACACGCACTTTGCGTTaaatcatctcg----attcctgtcaaagatatcgaaatagt-------gta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   763019 26 -  4500979 CTATCTAAA-----------------------------------TGTC---GACATCGAAA-----------ATG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2032228 37 +  4147112 aCACTTATCCACg------------------ttcg----ttttttgtt---gaactctAGA-----------G--
i caePb3.Scfld02_0      I 84 C 0
e caeJap4.Scaffold18142   72271 291 +   343467 I
e caeSp111.Scaffold630  5764121 33 + 20921866 I

a score=-4453.000000
s ce10.chrX             3645552 28 + 17718866 ---------------TCCAAGTACTTTAACAGTGTACCATACg
s cb4.chrX              8761609 40 + 21540570 aactaataaattgttgatgataaaatgacaaatatttatc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   763045 31 -  4500979 GACCAG---------GTTCAGGGATTTACTAATATATTTC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5764154 25 + 20921866 ---------------TCCAAGAAATTTATCGAAAACATCT---
i caeSp111.Scaffold630  I 33 C 0
e caePb3.Scfld02_0      2032265  0 +  4147112 C
e caeJap4.Scaffold18142   72271 291 +   343467 I

a score=-68074.000000
s ce10.chrX             3645580 192 + 17718866 caattggcaattttcatac-caattttgagcattttctaaaat---------------------------------------agatcaatt---aaaat-aaattaac-----ttttcgcat-----aaatataacgattATTTTTAAA------------AATAAACCACCCATACTGGAGAAA---------TACAATTTCAACGCGTTTACATAACAATGCTT-----ATAAAAATTAC-----TCGAAATAAAAAAAAC-TTATATTTAGTTCT
s cb4.chrX              8761649 211 + 21540570 -agttgacaa------------gtttttgatatcatcaacagaaatcgagataattgagctaaacgTTGACGTTTTGgatgggcttcaatt--agaaaT-TCGATAGT-----TTTTTG-----------TGATTCTCAAATTTGTTGG------------AAAAATCTTAATATAAT---TATCTATGCTCTGTTCAATATT------TCCAACCATTGTTACATCTGCAACATAAACCTA----------ATAATTGAAAA----TATCAGGTTCT
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   763076 117 -  4500979 -----------------------TTGTCTACGTTGT----------------------------------------------ATTCCAATT--GGCAGTGTCAATAAT-----------------------------------------------------GAAAAACTAGGAATAAG---CACT---------TCAAATATC------TCATATCAGTGTGGTTT-----ACATGAATCAA----------CAAGAACAAAA----TTTCTAGTTct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5764179 134 + 20921866 -CATTCACAAAT----------GAATTCTACATCTT----------------------------------------------GTTTCTATT---GAACT-TGAAAAGT------------------------TCGCTATCATCTCTTCA------------AATAATCCACTTATGTG---AACA---------TATGAGTT--------------GGGGTGGTTT-----ACAGagatcaa------------caaaaaaac----tgtctagttat
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2032265 102 +  4147112 ---TACACAA------------------------------------------------------------------------------------------------------------------------------TCTCATATCCCCA------------AACAAACCTCTTGAAAT---GACA---------TACAATGT--------------GATATGGTTT-----ACACAAACTAAAGCtaagaaaataggaaaaac----tgTCTAGTTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   72562 203 +   343467 taattagaaaatttttgatataATTTTTTACACGTTTCCGAAATCACAA---------------------------------AATCccatttttgcaag-tctgtaatggacctattcataggattaaaaaaacactttttttttcctattcatagatgtcaaaaaacgtcaaacaat---gtta---------aaaaacgtt------------taaaaatgtta-----aaaaatgtcaa------------aaaacgaatcctatgaataggtcc
i caeJap4.Scaffold18142 I 291 C 0

a score=-9553.000000
s ce10.chrX             3645772 29 + 17718866 AT-GATGTGGGATACACAAACACCGCCTAA
s caeRem4.Crem_Contig0   763193  1 -  4500979 ---------------------a--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5764313  9 + 20921866 ----------------aaaaaaacg-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2032367  8 +  4147112 -----------------GAATACtt-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   72765 23 +   343467 ataaatgtaaatttttcaaaaaa-------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8761860 39 + 21540570 I

a score=142733.000000
s ce10.chrX             3645801 899 + 17718866  
s cb4.chrX              8761899 929 + 21540570  
i cb4.chrX              I 39 I 1
s caeRem4.Crem_Contig0   763194 787 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 73
s caeSp111.Scaffold630  5764322 784 + 20921866  
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      2032375 769 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   72788 929 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-3916.000000
s ce10.chrX             3646700 9 + 17718866 ----TGAAT-TATT
s cb4.chrX              8762829 6 + 21540570 ----aaaatg----
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5765122 5 + 20921866 ----TCAAT-----
i caeSp111.Scaffold630  I 16 I 4
s caePb3.Scfld02_0      2033147 5 +  4147112 ----tcatt-----
i caePb3.Scfld02_0      I 3 I 52
s caeJap4.Scaffold18142   73717 9 +   343467 aacatttat-----
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=804.000000
s ce10.chrX             3646709 4 + 17718866 TTA--T
s cb4.chrX              8762835 6 + 21540570 ttagtT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5765131 4 + 20921866 TTA--T
i caeSp111.Scaffold630  I 4 C 0
s caeJap4.Scaffold18142   73726 4 +   343467 tta--t
i caeJap4.Scaffold18142 C 0 I 971
e caePb3.Scfld02_0      2033152 52 +  4147112 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=-412.000000
s ce10.chrX             3646713 14 + 17718866 CTAATAGGTATATT
s cb4.chrX              8762841 11 + 21540570 TGAGTATAATT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5765135 14 + 20921866 CTAATAGAGATCTT
i caeSp111.Scaffold630  C 0 I 40
e caePb3.Scfld02_0      2033152 52 +  4147112 I
e caeJap4.Scaffold18142   73730 971 +   343467 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=-100.000000
s ce10.chrX             3646727 15 + 17718866 TTAATGATCAAATTA
s cb4.chrX              8762852 15 + 21540570 CTCCCGAGCTAAGGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2033152 52 +  4147112 I
e caeJap4.Scaffold18142   73730 971 +   343467 I
e caeSp111.Scaffold630  5765149 40 + 20921866 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=-24619.000000
s ce10.chrX             3646742 437 + 17718866  
s cb4.chrX              8762867 487 + 21540570  
i cb4.chrX              C 0 I 74
s caePb3.Scfld02_0      2033204 372 +  4147112  
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold18142   73730 971 +   343467 I
e caeSp111.Scaffold630  5765149  40 + 20921866 I
e caeRem4.Crem_Contig0   763981  73 -  4500979 I

a score=-667.000000
s ce10.chrX             3647179 40 + 17718866 CTATTTCT---------GAAACAGGGTCCACATTTT------------------------AAAATA-AAGCGAT
s caePb3.Scfld02_0      2033576 74 +  4147112 CTGTTCCTCTCTTTCGCAAAAACTATTCTACATTGTTTAGTATAAGTTAGTTTATTgtacaaaatatgaataat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   73730 971 +   343467 I
e cb4.chrX              8763354 74 + 21540570 I
e caeSp111.Scaffold630  5765149 40 + 20921866 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=-377.000000
s ce10.chrX             3647219  5 + 17718866 -----------------GTACG
s cb4.chrX              8763428  5 + 21540570 -----------------GTGAG
i cb4.chrX              I 74 C 0
s caePb3.Scfld02_0      2033650 22 +  4147112 aTGCGATCCTTTTGTTAGTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   73730 971 +   343467 I
e caeSp111.Scaffold630  5765149 40 + 20921866 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=-5251.000000
s ce10.chrX             3647224 23 + 17718866 CTCAAATTCAAA----TTT----TGAACTTC--------
s cb4.chrX              8763433 23 + 21540570 ttaa----cagaaaaattt----aaaagctC--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2033672 31 +  4147112 TTCCTCTTCTGAATCGCTTGCTAAGAAACTT--------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142   74701 19 +   343467 ----------------ctT----TAATTCTTATTTTCCC
i caeJap4.Scaffold18142 I 971 C 0
e caeSp111.Scaffold630  5765149 40 + 20921866 I
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=435.000000
s ce10.chrX             3647247 3 + 17718866 CAA
s caeSp111.Scaffold630  5765189 3 + 20921866 cat
i caeSp111.Scaffold630  I 40 C 0
s caePb3.Scfld02_0      2033707 3 +  4147112 CAT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   74720 3 +   343467 CCT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8763456 0 + 21540570 C
e caeRem4.Crem_Contig0   763981 73 -  4500979 I

a score=628931.000000
s ce10.chrX             3647250 927 + 17718866  
s cb4.chrX              8763456 949 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   764054 973 -  4500979  
i caeRem4.Crem_Contig0  I 73 C 0
s caeSp111.Scaffold630  5765192 921 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2033710 918 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   74723 885 +   343467  
i caeJap4.Scaffold18142 C 0 I 931

a score=-8862.000000
s ce10.chrX             3648177 21 + 17718866 TCATGAGT---GAGAAAAAG---------TACA
s cb4.chrX              8764405 30 + 21540570 GAGAAGGT---TAGCAATAATCAGTTAAAGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765027 27 -  4500979 TGTACTGT---AAGGAAAAACAAGTT---GACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5766113 26 + 20921866 TGAACGAG---GAGGATTGACGG-TT---AACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2034628 28 +  4147112 TCAACAAAAGTGCAAAGTTACGA--C---AACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   75608 931 +   343467 I

a score=160706.000000
s ce10.chrX             3648198 164 + 17718866 TACTCTCGCATCGAGTAACAAATTGTCAGGTTTAATGTCACGATGAATGAAGCCCAGGCTGTGAATAAATTGAATGGCAAGTGCAGCCTCAGCAATATAGAATTGAGTTGCTTCCTCGGTCAATGTGTCTTTCTTTATAAGTAGAGTCATCATGTCGCCTGGAA
s cb4.chrX              8764435 164 + 21540570 AACTCTTGCATCTAGGAGGAGGTTGTCCGGTTTGATGTCGCGATGTATGAATCCGAGATTATGAATGAATTGGATGGCAAGCGCGGCTTCGGCGACGTAGAACTGAGTGGCTTCCTCGGTGAGGGTGTCTTTCTTTATGAGTAGAGTCATCATATCACCTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765054 164 -  4500979 TACTCTTGCGTCGAGGAGAAGGTTGTCTGGCTTAATATCACGATGTATAAAACCGAGGCTGTGGATAAACTGGATAGCTAGAGCTGCTTCAGCAATGTAAAACTGAGTGGCGTCTTCAGTCAATGTGTCCTTCTTTATAAGAAGAGTCATCATGtcacctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5766139 164 + 20921866 AACTCTGGCATCAAGCAAAAGGTTATCTGGTTTGATGTCACGATGTATGAATCCGAGGTTGTGAATGAATTGGATTGCAAGTGCAGCTTCAGCAACATAGAATTGAGTTGCTTCCTCCGTCAAAGTGTCTTTCTTTATCAAAAGGGTCATCATATCACCTGCAA
i caeSp111.Scaffold630  C 0 I 45
s caePb3.Scfld02_0      2034656 164 +  4147112 TACTCTTGCATCAAGCAAAAGGTTATCTGGTTTAATATCACGATGAATGAATCCAAGGCTGTGGATGAATTGAATTGCAAGGGCAGCTTCGGCAATGTAGAATTGAGTTGCTTCTTCGGTCAAAGTGTCCTTCTTGATTAGTAGAGTCATCATATCACCTAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   76539 164 +   343467 tACTCTGGCATCCAGAAGAAGGTTGTCAGGTTTGATATCACGATGTATAAATCCAAGATTGTGAATGAATTGAATGGCAAGAGCGGCTTCCGCAATGTAGAACTGTGTCGCCTCCTCGGTGAGTGTGTCCTTCTTTATAAGAAGGGTCATCATATCACCTGAAA
i caeJap4.Scaffold18142 I 931 C 0

a score=923.000000
s ce10.chrX             3648362 6 + 17718866 CAACGA
s cb4.chrX              8764599 4 + 21540570 --ATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765218 4 -  4500979 --aaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2034820 6 +  4147112 CAGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   76703 6 +   343467 TGatga
i caeJap4.Scaffold18142 C 0 I 419
e caeSp111.Scaffold630  5766303 45 + 20921866 I

a score=276.000000
s ce10.chrX             3648368  8 + 17718866 -------GGATTAAT
s cb4.chrX              8764603  9 + 21540570 ------TAGATGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765222 15 -  4500979 agcattttgatagat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2034826  8 +  4147112 -------ACATGAAT
i caePb3.Scfld02_0      C 0 I 596
e caeJap4.Scaffold18142   76709 419 +   343467 I
e caeSp111.Scaffold630  5766303 45 + 20921866 I

a score=-857.000000
s ce10.chrX             3648376 27 + 17718866 AGAAGATTAGAGAAGATACAGGTATTT
s cb4.chrX              8764612 22 + 21540570 GTTATGTGAGATAAATT-----TATTT
i cb4.chrX              C 0 I 462
s caeRem4.Crem_Contig0   765237 11 -  4500979 ------ttggacaagtt----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2034834 596 +  4147112 I
e caeJap4.Scaffold18142   76709 419 +   343467 I
e caeSp111.Scaffold630  5766303 45 + 20921866 I

a score=324.000000
s ce10.chrX             3648403 13 + 17718866 TTCTTATCAGTAA
s caeRem4.Crem_Contig0   765248 13 -  4500979 ttcttgaaaatca
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2034834 596 +  4147112 I
e caeJap4.Scaffold18142   76709 419 +   343467 I
e cb4.chrX              8764634 462 + 21540570 I
e caeSp111.Scaffold630  5766303 45 + 20921866 I

a score=0.000000
s ce10.chrX             3648416 1026 + 17718866  
e caePb3.Scfld02_0      2034834  596 +  4147112 I
e caeJap4.Scaffold18142   76709  419 +   343467 I
e cb4.chrX              8764634  462 + 21540570 I
e caeSp111.Scaffold630  5766303   45 + 20921866 I
e caeRem4.Crem_Contig0   765261    0 -  4500979 C

a score=109.000000
s ce10.chrX             3649442 20 + 17718866 AATTTGTAGTTATAGTTTCC
s cb4.chrX              8765096 19 + 21540570 AACTTCTAGCCA-AGTGTGA
i cb4.chrX              I 462 C 0
e caePb3.Scfld02_0      2034834 596 +  4147112 I
e caeJap4.Scaffold18142   76709 419 +   343467 I
e caeSp111.Scaffold630  5766303 45 + 20921866 I
e caeRem4.Crem_Contig0   765261  0 -  4500979 C

a score=329.000000
s ce10.chrX             3649462 2 + 17718866 CT
s cb4.chrX              8765115 2 + 21540570 CC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2035430 2 +  4147112 CT
i caePb3.Scfld02_0      I 596 C 0
e caeJap4.Scaffold18142   76709 419 +   343467 I
e caeSp111.Scaffold630  5766303 45 + 20921866 I
e caeRem4.Crem_Contig0   765261 0 -  4500979 C

a score=422.000000
s ce10.chrX             3649464 1 + 17718866 T
s cb4.chrX              8765117 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765261 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2035432 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   77128 1 +   343467 t
i caeJap4.Scaffold18142 I 419 C 0
e caeSp111.Scaffold630  5766303 45 + 20921866 I

a score=350003.000000
s ce10.chrX             3649465 411 + 17718866 ACCTCCTGGCAAGAACTCCATAACTAAGTATAAATTTGAATAATCTTGAAACGAGTAGTACATTTTGACTACCCAATCACAGTCAGCCTCCGATAAAATGTCTCTTTCAGCGCGAACATGAGCAGTTTGCTCTTTCTCCACCATTTCGCTCTTTCTCAAAATCTTCATCGCGTAAATATGTCCAGTGTCGTGTTTTTGAACAAGGCGAACCTAAAA-AATA---------AATAAAAAATACATGAAATTGAATTTGGGAGTGGTTTCAACCGACCTCTCCGAACGCTCCTCGTCCAATCACTTTGAGACTTTCAAAGTCATTTACAGTCAGGCGGGTTCTTTTGAGGCGAAGGTAGTCGGTTTCTTTGGAGTGGTGGATTTTTCGCTTCTCTTCTTTCTCCTCGTCACTCAGTCCTAAAA-------------------------------------------------------
s cb4.chrX              8765118 409 + 21540570 ACCTCCGGGCAAGAACTCCATGACCAAGTATAGATTCGAGTAGTCCTGGAACGAGTAGTACATCTTCACGACCCAATCACAGTCAGCTTCCGACAATATGTCTCTCTCGGCACGAACATGAGCCGTTTGCTCCTTCTCAACCATTTCACTCTTGCGAAGAATTTTCATCGCATAGATATGTCCGGTATCGTGTTTTTGAACGAGTCGCACCTGCAA-ATTCggcgttttttgaaaag-------aaag---aaaattggtAGGCT-GTGGTTTACCTCTCCGAACGCTCCTCTACCAATCACTTTAAGACTTTCAAAGTCGTTAACCGTCAGACGAGTTCGTTTAAGACGGAGGTAGTCGGTTTCCTTGGAATGATGAATTTTGCGTTTCTCGTCTTTCTCGTCATCGCTGAGTCCTTAAA-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   765262 406 -  4500979 aCCTCCTGGAAGGAACTCCATAACCAAGTAGAGATTCGAGTAGTCTTGGAACGAGTAGTACATTTTCACAACCCAATCACAATCAGCTTCCGACAATATGTCTCTTTCAGCACGGACGTGCGCTGTCTGCTCCTTCTCAACCATTTCACTCTTACGGAGAATTTTCATAGCGTAGATATGTCCGGTGTCATGTTTTTGAACAAGTCGCACCTGAAACACTTAGgg-----cgtaaaa-------atga---aaaatgggtgTGCCGGTATTTTACCTCGCCGAACGCTCCTCTTCCTATAACTTTGAGACTTTCAAAGTCATTTACGGTGAGACGAGTTCTCTTCAGACGGAGGTAGTCGGTTTCCTTTGAGTGGtggatttttcgtttttcgtctTTCTCGTCGTCACTCAGTCctagaa-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  5766348 405 + 20921866 ACCTCCCGGTAAGAACTCCATAACCAAGTAAAGATTCGAGTAATCTTGGAACGAATAATACATTTTCACAACCCAATCACAGTCAGCCTCTGATAATATATCCCTCTCTGCGCGAACATGGGCAGTCTGTTCCTTTTCAACCATTTCACTCTTTCGGAGAATCTTCATCGCATAAATGTGTCCAGTGTCATGTTTTTGAACAAGACGCAcctgaaa-a------------agtaaaattgaaatgaga---aataaggGTGTGGCTGCAATTTACCTCTCCAAACGCTCCTCTTCCTATGACTTTGAGACTTTCAAAGTCATTTACAGTGAGACGAGTTCTTTTCAGACGAAGATAGTCGGTTTCTTTCGAATGatgaacttttcttttttcatctttctcgTCGTCACTCAAACCTATAA-------------------------------------------------------
i caeSp111.Scaffold630  I 45 C 0
s caePb3.Scfld02_0      2035433 411 +  4147112 ACCTCCTGGCAGAAACTCCATGACCAAGTAGAGGTTTGAGTAGTCTTGGAAGGAGTAATACATTTTGACAACCCAATCACAGTCAGCCTCTGACAAAATATCCCTTTCTGCACGAACATGAGCTGTTTGTTCCTTTTCAACCATTTCGCTTTTGCGGAGAATCTTCATGGCGTAAATATGTCCGGTGTCGTGTTTTTGAACAAGGCGTACCTGAAA-ATTCGGG------CGTAATAGATGATCGGAA---AACATGGGAGTGGTTGAAACTGACCTCTCCGAACGCTCCTCGTCCGATAACTTTGAGACTTTCAAAGTCATTTACTGTGAGACGAGTTCGTTTGAGACGAAGGTAGTCGGTCTCCTTTGAGTGatgaattttccgtttttcttctttttcatcatcgCTCAaacctggaa-------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   77129 458 +   343467 acctCCCGGCAAAAACTCCATAACCAAATACAAATTCGAATTGTCCTGGAACGAGTAATACATTTTAACGACCCAATCGCAATCCGCCTCTGACAATATGTCTCTTTCAGCTCGCACGTGAGCCGTTTGCTCCTTTTCGACCATTTCGCTTTTTCGTAAGATTTTCATGGCATAAATGTTACCGGTATCGTGTTTTTGAACTAGGCGAACCTGGAG-Agaagtt------taaaaattatgaatgGAA---AACTGAAAGCAGGT--------ACCTGTCCGAATGCTCCTCTGCCAATCAATTTGAGACTTTCAAAATCGTTGACCGTCAGTCGAGTTCTTTTAAGTCGCAGGTAGTCAGTTTCTTTCGAATGGTGGATTTTGcgtttttcctctttttcctcATCGCTCAAGCCTGGaatgtgtttttattttttgattttcttttttgtttcaaatgcGGCATTATGGGAAAA
i caeJap4.Scaffold18142 C 0 C 0

a score=-9144.000000
s ce10.chrX             3649876 32 + 17718866 ---CAGCAAAT---------CGAATTTTAAGTCTTCGATTTTGT
s cb4.chrX              8765527 23 + 21540570 ---CGGttcat------------------tttctcaaatctTGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5766753 20 + 20921866 ---------AT---------------ACTCTGGTTAACTGTGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2035844 28 +  4147112 ---------att-------tcaattgatatttctgaaatgcagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   77587 44 +   343467 CATAgacccattttttaaatcgattcttcgatccaaaattttct
i caeJap4.Scaffold18142 C 0 I 164
e caeRem4.Crem_Contig0   765668 38 -  4500979 I

a score=-2467.000000
s ce10.chrX             3649908 4 + 17718866 --GGTT
s cb4.chrX              8765550 4 + 21540570 --CTAT
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold630  5766773 4 + 20921866 --GTTC
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2035872 4 +  4147112 --tttc
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   77795 4 +   343467 GGGt--
i caeJap4.Scaffold18142 I 164 C 0
e caeRem4.Crem_Contig0   765668 38 -  4500979 I

a score=140277.000000
s ce10.chrX             3649912 324 + 17718866 -------------------------------------------------------------TTACCT----------------------------------------CTGGCAGATATGTCTTCCTCCAACTTTTTCAAACGATTTTCTCGCTCCGCACATTGTGTGACACGCTTTGAGTAGTAGGATTCAATTGAAATTCTAGTACAACTTGCCTGTAAA-AATTAATTTTA---------ATGTT-------TCG------AATTCTAATAATGAAATTACCTTATCCTTTGTGTACTGCGATATTTCCATTTCCGGTGCAATTTCTCCCATAGTTGAG---ATTTA----TACCTG-AAAATCAATATTTCATCC-----GAGAAGAAA----CGGAAAAAGGGGAAGGGC---AGTGAGAATGTAAAATAGTGTATGCGGA------GGAATAAACG-------------TCGGGCAAATATT
s cb4.chrX              8765564 328 + 21540570 -------------------------------------------------------------TTACCT----------------------------------------CTCGCAGACATATCCTcctccaactttttcaaacgATTCTCGCGTTCGGCGCATTGTGTGACACGTTTCGAGTAGTAGGATTCAATTGAAATTCTTGTGCAACTCGCCTGAACA-TTTCGTTTTTCTTGT-----CTGATAAGTGTTTCG------AATAC-----------TCACCTTATCCTTAGTGTACTGTGATATCTCGACTTCTGGCGCAACATCACCCatttttgagataattca-----acctg-aaaatcgatattcaaTAC-----GAAGAAGGAAGAACGGGACAAGAAGGGTGTTTTACGAGAA-----GAGAAAGTGTGCGCGGT------GGAATAGACG-------------TCGAGTAAACATT
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   765706 324 -  4500979 -------------------------------------------------------------TCACCT----------------------------------------CTTGCTGACATATCCTcctccaatttcttcaaacGATTCTCTCGTTCGGCACATTGTGTTACACGTTTTGAGTAGTACGATTCAATCGAAATCCGCGTGCAACTTgcctgaaat-gaaaaatattgttggacaaaatgaaaaactgacgG------AACAC----------AATACCTTATCCTTTGTATACTGAGATATCTCGACTTCTGGCACAATATCCCCCATTGTTGAG---ATTCA-----ACCTGAAAAATCGATGCGTTTTTC-----GGAACAGAA----------AAGTGAAGCGTT----GTGAG-----GGGAAAGTGTATGCTGTCGCCGGGTAACAGACG-------------CCAAGCAAATATT
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold630  5766789 301 + 20921866 -------------------------------------------------------------TTACCT----------------------------------------CTTGCCGACATATcctcttccaatttcttcaaacGATTTTCGCGTTCCGCACATTGTGTGACTCGTTTTGAATAGTaagattcaattgaaattcgtGTACAACTTGCctgaaaa-taacattttct---------aTCATAGT----TCA------AGTCTAAAAA---CCATTACCTTATCTTTCGTATATTGagatatttcaatttccggTGCAACTTCCCCCATAGTTGAG---ATGAG-----ACCT-AAAAATCGATT-------------GTAAcagga-----atagaaaaaagaatcgc----GTCAG----TAAGATAGTGTATGCG--------------GACG-------------GAGGGCAAATATT
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      2035879 297 +  4147112 -------------------------------------------------------------ttacct----------------------------------------CTAGCAGACATATCCTCCTCCAATTTCTTCAACCGATTCTCTCGTTCCGCGCATTGTGTCACTCGTTTCGAGTAATAGGATTCAATAGAAATTCTTGTACAACTGGCCTGAAAGTTGTTAATTTTA---------ATCATGATAGCATTT------TGCCT--------TTTTTACCTTATCTTTGGTATACTGCGATATTTCAATTTCCGGTGCAACTTCCCCCATCGTTGAG---aataa-----acctgaaaaatcgata-------------gagtcagga---------gaaaagaaatggt----gTAAG-----AAAATAGTGTATGCG--------------GAAG-------------GAGGACAAATATT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   77799 443 +   343467 ccatttttgacaataatttccaaaatttcaggctaatcggagcattttcagttaatttttttttcttcaatttttttaataaccccattagttttGAACTCGAACCTCTTGCCGACATATCCTCCTCCAATTTTTTCAGACGATTCTCTCTTTCTGCACATTGCGTGACACGTTTTGAGTAGTACGATTCGATGGCAATCCTGGTGCAGCTGGCCTGGAAATCGATaatgtta---------aatatttatttatcgaCACAAAATAC-----------TCACTTTATCCTTTGTATACTGTGATATCTCAATTTCCGGTTCTACTTCACCCATA-TTGAG---ACAGGGTCTTATctg-aaaatcgattttttggtcaaggagaaagagaa-----aaagaaagcgagagaac----gagag----agcaagaaagcaagcaaa------agtagaaaCGATCGTATTTATTCTTGGGTAAATATT
i caeJap4.Scaffold18142 C 0 I 2736

a score=17431.000000
s ce10.chrX             3650236 41 + 17718866 GGTGGACGGCTAACTACACCTTTGACTATAACATACTAGGA
s cb4.chrX              8765892 40 + 21540570 AG-GGGAGGTTAACTACGCCAGTGACTATAACATACTAAAA
i cb4.chrX              C 0 I 330
s caeRem4.Crem_Contig0   766030 35 -  4500979 ----GGGGGTTAACTACATACGAGACTATAAAATACCAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5767090 38 + 20921866 ---GGAACGATAACTACGTTGGAGACTATAAAAtactaaaa
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2036176 38 +  4147112 ---GGAAGGTTAACTACATCGGAGACTATAACAtactaaaa
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18142   78242 2736 +   343467 I

a score=-297.000000
s ce10.chrX             3650277 18 + 17718866 --ACCGCAAAAAACT---ATTTT
s caeRem4.Crem_Contig0   766065 18 -  4500979 ACCTTGAAAAGTTAG-----TTT
i caeRem4.Crem_Contig0  C 0 I 969
s caeSp111.Scaffold630  5767140 18 + 20921866 --GTTGTAGAGAAAG---GTTTT
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      2036224 21 +  4147112 --gtTACGAAAATAGTATGTTTT
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8765932 330 + 21540570 I

a score=-15472.000000
s ce10.chrX             3650295 188 + 17718866 CTTTTAGGAATGTGTGCTTTGTGA---------------------CACAACATAATTTTTTTTTTCGAA---------------------------------------AGTAGTAA----------GGCGGTTTTTATGAAAAAATTAAGA---------AAATTAATT-TGCAAA-GATCT------------ATATGAAATTTGA--------------GAAAAAACTTGT--------AAAA---T--------------ATAATTTTCCAAAA--------------AAAAAACAGTTGAAA----------TGTGAGCGCAGAA--AATTTATCATT-ACAA
s caeSp111.Scaffold630  5767158 296 + 20921866 GGAATGGAGATAAGGTTTTAATAAAGCTTCCATTTGGATTTCGtcgtaaa---aatatttttctacgATGAatatgaatagaaaaattctttgatttttgatatgaCATGTaataatgaatgaaaa--------ttgtgaTAACGTAAAAATTAAACTAAAATGCAACTGTGCAAA-TAATTTTAACTATCagcacaaaaaattatatttttcttatttttgaatgattttgcGAGAACGTAAAA---TCATGGGACTAACAGAGAGTTTTTCTCGA--------------tcaaaacagta--------------tttttatATAGTA--AACTAG------CTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2036245 307 +  4147112 G---------TGTGGTCTTATTGA---------TAAGATGACGCTGATAAtgtgatgttttt----gaaaagcacAGATTAAAAAATGTCTTCAGAATAGGAATAAT-TGTAGCAGCTTATGTAGCTGTGGTTTTTGAGACATAATAGGCACAAAATCACAAAttgatt---caaagtttttttttcagttcgaataAGAAGCCGCA------------TAGataaaacttgtttgaaacgaaaatttttacgaaaataaC--TGAGTTTTTCTAAAGATGCATTAAAATTTCGAACAAGTAGATAATCAAGTAGGTTCTCACATATTATCAACAGGATATTCCCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8765932 330 + 21540570 I
e caeRem4.Crem_Contig0   766083 969 -  4500979 I

a score=-1132.000000
s ce10.chrX             3650483 11 + 17718866 TTCCAATGAGA-
s cb4.chrX              8766262 11 + 21540570 tctcaaaaaaa-
i cb4.chrX              I 330 C 0
s caeSp111.Scaffold630  5767454 11 + 20921866 -TCCAATTATGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2036552 11 +  4147112 -TTCAAACTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e caeRem4.Crem_Contig0   766083 969 -  4500979 I

a score=17591.000000
s ce10.chrX             3650494 124 + 17718866 ----------------------AGCAGAACGCAACAATAAGTGAG------ACCAAAACGCGTCGGTGTGCATACAC---ACGTG------ACATTGCATCTGCACACAATACACCATATCCTACGACACTTTGTCCGCGCAGTGGG-----------AGAAAGTG-----TCGGGG----
s cb4.chrX              8766273 139 + 21540570 ----------------------aactcgataaaacaaaaaatcttggAG--AACTGAACGC-GTCGTGTGCATACACGTGATGAGAACACCACGCCTCGGCTGCACACAATGCATCACACCCGACGACATTTATT----GCTGTCGAGAGGGGG----AGAGAGTG-----CGGAgg----
i cb4.chrX              C 0 I 504
s caeRem4.Crem_Contig0   767052 134 -  4500979 -------------------AGCAAAACGATGAATTAAAAAACCAC-----------AACGCTATATTCTGCAAACACGCGACG--------ACACCACGACTGCACACAAAACATCCGACCCCACGACATTCTCTCCGCGCAGTAGAAAGAGGGTCGACAAAAGGG-----AAAAGG----
i caeRem4.Crem_Contig0  I 969 I 11
s caeSp111.Scaffold630  5767465 152 + 20921866 At--------------------agctcaa-aaaacaataaataatCAAG--AGAAGAATGCATTGTTGTGCATACACGTGATGAG------ACACCCCGTCTGCACACAATGCATCAGACCCTACGACACTTGGCCCGCGCAGTCAGAGAAGTGAACAAAAGGGGGGAGATGAAAGGAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2036563 166 +  4147112 ATTCACCAATTTGCATATAAGaaccatca-aaaacaaaagccAAACGAGTAAAAAGGGTGC---GTTGTGCATACACGTGATGAG------ACATCCACACTGCACACAATGCATCAAACCCTACGCCAACTGGCCAGCGCAGTCAGAACCGACAACAAAAGAGGG-----GAAAGGGGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I

a score=11865.000000
s ce10.chrX             3650618 70 + 17718866 CGCATAACGGGACAACAATGGC----------GTGTGAGAGGGC----AACCCGGACAGGAAAGAGAAC----AGT----CATTGGTTTGCA
s caeRem4.Crem_Contig0   767197 82 -  4500979 CACACATTGGAAGAACAAT--AAat-------gtgaaaagagaaatggaaaacggACATAGAAAGGAACAGTTATTGGTATATTGGGTTGC-
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  5767617 82 + 20921866 CACACTGCGGAAGAACAATGGAAATGGGGTTGGTGAGAACGGAC----AAGACGGACATAAAATGGA------AGTGGTGGATTGGTTTCCA
i caeSp111.Scaffold630  C 0 I 367
s caePb3.Scfld02_0      2036729 81 +  4147112 CACACAACGGAAGAACAATGGAAAT-GGGTGGGTGAGAACGGAC----AGAACGGACATAAAATGGA------AGTGGTAGATTGGATTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I

a score=13.000000
s ce10.chrX             3650688 40 + 17718866 GCTGGTGTTCGGGTCC-GCTAAGGTATTGATTTTTTGGTAG
s caeRem4.Crem_Contig0   767279 28 -  4500979 ---GGTGTTGG--TCCCAttgaaatgttgtttt--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2036810 37 +  4147112 ----ATGTTGGGTCCCAATTGtaggtttgattttttgtcag
i caePb3.Scfld02_0      C 0 I 244
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I

a score=709.000000
s ce10.chrX             3650728 39 + 17718866 ACACCGATTTGTAAACATAAT----TGAAAAAAATAAAGTATT
s caeRem4.Crem_Contig0   767307 42 -  4500979 -cattGCCTTCCGGATAGAATAacatgaaagaaaaacattatt
i caeRem4.Crem_Contig0  C 0 I 320
e caePb3.Scfld02_0      2036847 244 +  4147112 I
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I

a score=0.000000
s ce10.chrX             3650767 642 + 17718866  
e caePb3.Scfld02_0      2036847 244 +  4147112 I
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I
e caeRem4.Crem_Contig0   767349 320 -  4500979 I

a score=646.000000
s ce10.chrX             3651409  95 + 17718866 ACCTCCGAATTCCCTCAACAAGA-------AACTATTTGACCTTGCATTCCCTTT-----GCCTACCACACCTTCAAAT----CGTTTCAACCATTA--TCAAAACATATCCG
s caePb3.Scfld02_0      2037091 111 +  4147112 atttccgattttcctcAGAACGATTTGGCGATTCATATGACCTTGCTTTCCGTATAAAACGCAAAACGCACCCGAGAATATAATGTTTCACATATCAAAGccaaacaattc--
i caePb3.Scfld02_0      I 244 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I
e caeRem4.Crem_Contig0   767349 320 -  4500979 I

a score=344.000000
s ce10.chrX             3651504 3 + 17718866 CAA
s caeRem4.Crem_Contig0   767669 3 -  4500979 CAA
i caeRem4.Crem_Contig0  I 320 I 5
s caePb3.Scfld02_0      2037202 1 +  4147112 --a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e cb4.chrX              8766412 504 + 21540570 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I

a score=-2182.000000
s ce10.chrX             3651507 5 + 17718866 TGTTT--
s cb4.chrX              8766916 5 + 21540570 --TGTTG
i cb4.chrX              I 504 C 0
s caeRem4.Crem_Contig0   767677 5 -  4500979 --TTTCG
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2037203 5 +  4147112 -ttttt-
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18142   78242 2736 +   343467 I
e caeSp111.Scaffold630  5767699 367 + 20921866 I

a score=37926.000000
s ce10.chrX             3651512 406 + 17718866 TTAATCCAACAAAGTCGCTTTA----TGAATAGACTGT------GCGCAAGTT-TTCAAA----TTCACAAGATCGTAGT--------GTTGAGAGATTCCTGTTTTTCTACCTCAACCAGCGAGCGACATAGAATT------GTATACTATTTTCTTATTTCTT----ACAAATAGTGTTGTTGTTGTTGATTGAAAAGTTGAATGCGTTCTTAGAAAAGTTGTTAGAAGAATCTTCTT---GAAAAATTGTTGTTTGAATTCAATTTAAATATT-TTTCTGTGACTGTATAAATACTCCTC-AACAAGTGA---AATGACATCAT-----TTGCAC-----TGCACATTGTGCTCTTAGTGGTCGCAACTTATAAAGTAGA-AATAAATAAAAAACCTGTTTCTG----CAAGTATTTACATACACTCTTCTATATTAGTGGTGTGGTGGAAAACGAAAA
s cb4.chrX              8766921 332 + 21540570 TTAATCCTAGTAAGtcgttttt------------ctagaaaaatgta----ttcttcaaaattttccacaaGAATCTATTCTATTGTGGAG--GGAATTCCTGTTTTTCAACCTCACC------GCAATCGGAGGCAACATACGTATACGATTTAC--ATTTTTTCGCGGCTAGTGGTC------TTGTT------------------------------GTTGTTTACCAGACGTTCT----AAGTATTTATA----------CTTGTGAGTATTGAGTTAGT----AGGCGACCA-------GTCGGGT-----AATGACATCACTTCTATTGCTATACAGTGCACAATGTGCTCCGATTAGTCGCA---------AAAGA-ACTAATaaaaaaaCTAGT---------TGACTATTTATAAACCCTTTTTTC------------AATGACAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   767682 347 -  4500979 TTAATCCAGAGAAGTCCTTTTGCTTGTGAATAGACTATGAAAATCTAC-AGTTCTTCAAA----TTCACAAGAGTCTATT--------GTT--GAAATTCCTGTTTTTCTACCTCTCC------GCGACCAGCCGCA------GTATACGTTTTAC--ATTTT------GCTATTGgtcttctttttgtt------------------------------attgtttaCGGTCACTTCC----AAATACTGAAAGT--------GTTGGGAGCATAATTTTTGC----GTATGACTACTAAAATATTAAAT-----AGTGACATCATTATTGTTGCTCTGCTCTGCACATTGTGCTCTCGGTGGtcgcattt----ttgaaaa-actaac--aaaaactaGTCTCTGTCAGTACCTATTTACATacactttttt---------------tgacaa-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5768066 352 + 20921866 TTAATCCAGAAAAGTCGTTTGG-CTTTGAATAGTCTCTCAG---CGACAAGTTCTTCAAA----TTCACAAGATCGTATT--------GTT--CGAATTCCTGTTTTTCTACCTCTTC------ACTATCGACAGCT------GAATacattttac----ttttt----tctagtagTCGTCTCGTTGTT------------------------------GTTGTTTACAGTGTCGTTCTCAGAAAAACTGATCGT---AATTCTT-----GTATAAATTTTGT--------TAATTCCATTGTTACAAGTGGCCGAATGACATCATTTTTGTTGCTC-----CGCACCATGTGCTCTCATTGGTCGCAGTT----TCGAAAGTACTAAC--AAAAACTAG--TTTACCACTATATATTTACATACAC----TTT--TCACTAATATAGTGTTGC-------
i caeSp111.Scaffold630  I 367 C 0
s caePb3.Scfld02_0      2037210 352 +  4147112 ttaaTCCTGAAGAATCTGTTGG-CTTTGAATAGACTATC-----cgacaagtttttcaaa----ttcacac-----tATT--------GTC--CGAATTCCTGTTTTTTCACCTCTCC------GCGATCAACCGCA------GTATacaatttac--atttttt----gctaGTAGTGTTC----TGTT------------------------------GTTGTTTAcgaccacttttt---gaagaatgactac---aaatatttttcagtataaTTTTTGT----ATAATACTACCAATTTCCTCAGC-----AATGACATCATTTCTGTTGCTT-----TGCACATTGTGCTCTCATTggtcgtttttt-tctcgaaaa-actaaC-TGCGAACTAGT-TTTTTCACAAGTTATTTACATACACTTCTTTC--TCACTTGAATAGTGTTGA-------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18142   78242 2736 +   343467 I

a score=76881.000000
s ce10.chrX             3651918 219 + 17718866 AAAAAAGTTTCAATTTTTTTATGCCAAAACTGATCCTTATTCTGCCTACAT-AT--------------------TTT----------ACTCATTTTGC-AGTTAATTGTGTCCGCGGATGGATGATGCATTGAAAGAAGCCGTCAATGATCATTTCGAAGGAATAACTACAGAATTTCAAGAGAATAGGAGTATTATCTCTGTTCTTCATCAAACAGTTATGGAGGGTGCTGGGTTAATGTATCCGGTAAG
s cb4.chrX              8767253 210 + 21540570 --ATATGTTGCCAATTTCTgct-------------cccacttttttttgat-tccaat--------------aGCTTGACCA-----aagagttttctagaattatt------GCTAATGGAAGATGCGTTGAAAGAAGCTGTCAATGATCATTTTGCCGCAATTACCACTGAATTCGAGGAAAACAGAAGTGTACTCTCAGTTTTACACCAGGCAGTTATGGAAGGATCCGGGTTGATGTATCCAGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   768029 206 -  4500979 -tataTGTTGcgagatttttct-------------ttctcattatttttac-CT--------------------GTTGACCATTTACAAATGTTT----AGCCTATC------ACGGATGGATGATGCATTGAAAGACGCTGTTAAAGATATGTTCTGTGGAATCACATCAGAATTTGAAGAGAATCGAAGTATAATGTCAATTCTACATCAAGCAGTACTGGAAGGTGCTGGATTAATGTATCCGGTAAG
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold630  5768418 201 + 20921866 -CATacgttttaaattttattt-------------tttactat-tcgaaac-at--------------------tttgaaC------GATTGTTTTC--AGGTGATT------GCGGATGGAAAATGCATTGAAAGACGCAGTTACCGATTATTTCACCGGTGAGACCactattttcgaagaaaacagaagttTGTTGTCCATTCTTCATCAGTCCGTAATGGAAGGATCCGGGTTGATGTATCCAGTAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2037562 203 +  4147112 -Ggttctttttatatttataat-------------ttcccgtt-ttgaaacttt--------------------tttgacc------aATCATTTTCT-AGGTTATT------GCGGATGGAAGATGCATTGAAAGATGCAGTTAGCGACTACTTTGCCGGTGAAACAACAATCTTTGAAGAGAACCGAACTTTGTTAGCAATCCTTCATCAACAAGTTATGGAAGGCGCTGGATTAATGTACCCGGTATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   80978 222 +   343467 aaaaaagtatatatttttttct-------------ctaacgtttttttaaa-cttgatttctttcgtcgaaatttttgaaa------atttatttc---agTTAATT------GTTGATGGATAATGCATTAAAAGAGGCTGTTGATGATCATTTCGCAGGGATTACCGCTATTTTTGAAGAGAATCGCAGCATTTTGTCAATTTTGCATTCAAGTGTGATGGAGGGATCTGGTTTAATGATTCCGGTAAG
i caeJap4.Scaffold18142 I 2736 C 0

a score=1332.000000
s ce10.chrX             3652137 2 + 17718866 CT
s cb4.chrX              8767463 2 + 21540570 TT
i cb4.chrX              C 0 I 36
s caeSp111.Scaffold630  5768619 2 + 20921866 TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2037765 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   81200 2 +   343467 TT
i caeJap4.Scaffold18142 C 0 I 938
e caeRem4.Crem_Contig0   768235 35 -  4500979 I

a score=-155.000000
s ce10.chrX             3652139 1 + 17718866 A
s caeSp111.Scaffold630  5768621 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2037767 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 831
e caeJap4.Scaffold18142   81202 938 +   343467 I
e cb4.chrX              8767465 36 + 21540570 I
e caeRem4.Crem_Contig0   768235 35 -  4500979 I

a score=387.000000
s ce10.chrX             3652140 13 + 17718866 T-TAATTATCAAAT
s caeSp111.Scaffold630  5768622 14 + 20921866 TATAATTACTGAAT
i caeSp111.Scaffold630  C 0 I 136
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeJap4.Scaffold18142   81202 938 +   343467 I
e cb4.chrX              8767465 36 + 21540570 I
e caeRem4.Crem_Contig0   768235 35 -  4500979 I

a score=0.000000
s ce10.chrX             3652153 646 + 17718866  
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeJap4.Scaffold18142   81202 938 +   343467 I
e cb4.chrX              8767465  36 + 21540570 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I
e caeRem4.Crem_Contig0   768235  35 -  4500979 I

a score=91.000000
s ce10.chrX             3652799 1 + 17718866 A
s caeJap4.Scaffold18142   82140 1 +   343467 a
i caeJap4.Scaffold18142 I 938 C 0
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e cb4.chrX              8767465 36 + 21540570 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I
e caeRem4.Crem_Contig0   768235 35 -  4500979 I

a score=409.000000
s ce10.chrX             3652800 3 + 17718866 TTG
s cb4.chrX              8767501 3 + 21540570 ttt
i cb4.chrX              I 36 C 0
s caeJap4.Scaffold18142   82141 3 +   343467 tTT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I
e caeRem4.Crem_Contig0   768235 35 -  4500979 I

a score=43779.000000
s ce10.chrX             3652803 121 + 17718866 CAGTCAAATTACGATTTCGAAGATGAAAACGAGAATACGGGCGAGGAGGCGAAGCATAACGCAGAAATTCAACGGCAAAAGAAAGAGAAGGACATTGAAATTGCGGAGGAAGTTGGTATGT
s cb4.chrX              8767504 121 + 21540570 cagtcCAACTATGAATTTaacgaagaaaatgagaatgcTGGAGAGGAGGCAAAACATAATGCGGAAATACAGAaacagaagaaggagaaagagaTTGAAATTGCGGAGGAAGTTGGTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   768270 121 -  4500979 cagGCCAACTATGACTACGATGATGAGAATGAGAACGCTGGAGAAGAGGCAAAACACATTGCGGAAATCCAAaggcagaaaaaagaaaaggaaattgaaattgcgGAGGAAGTTGGTAAGT
i caeRem4.Crem_Contig0  I 35 C 0
s caeJap4.Scaffold18142   82144 121 +   343467 CAGTCAAACTATGATTATGAAGATGAAAGTGAAAACACTGGAGAAGAAGCTAAACATATTGCGGAAATacaaaagcagaaaaaactgaaagaaattgaaattgTCGATGAAATTGGTGAGT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I

a score=-1482.000000
s ce10.chrX             3652924 12 + 17718866 G----GTTTTTGACTA
s cb4.chrX              8767625 16 + 21540570 AATGGGTTTTTCAATA
i cb4.chrX              C 0 I 1096
s caeRem4.Crem_Contig0   768391  1 -  4500979 A---------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeJap4.Scaffold18142   82265  0 +   343467 C
e caeSp111.Scaffold630  5768636 136 + 20921866 I

a score=-3838.000000
s ce10.chrX             3652936 319 + 17718866 TTTTTAATGATGAGTCAGATCCCACAGAAGACGTTCAGTTTTTTTACTGAGCCCAACTTTTTTCTCTGTTTTTTTTTTGCTACAGGTAAAACGTTATGAGATCAATTTTTTCTAAGACGATATGCAGTGTGATATAAGTTTCAAAATATGCGGTAATTTGAACAAAACTTATAAAACATTTTTAACAGCTACAGGTCATCACATTTTGTGTTCATTTATTTATTCTATGAAATTACAAAAATATTTCTGTTAAAAAATTGTTCGGAATAATATATGTAGTTAAAAAAGGGTAAGAATTAGTTCTCAGCACATTTTTCtt
s caeRem4.Crem_Contig0   768392 170 -  4500979 ----------------------------------TAGGGTTTGCTACTGAAC-----------------TATTAGTCTgcgaaagaaaaa------------taatttt--ccagga------------------gaattgaaaaacg---------------aatactttcaaa---ctttcaata-cCACAATTGA-CAAAATTTGTGATAATTCTTCg---ctaaaaaat-----aaacaattttgatgaa------ttcaagATA-----------TAAA--------------------CCGTACATACCGCC-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeJap4.Scaffold18142   82265   0 +   343467 C
e cb4.chrX              8767641 1096 + 21540570 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I

a score=0.000000
s ce10.chrX             3653255 2 + 17718866 at
e caePb3.Scfld02_0      2037768 831 +  4147112 I
e caeJap4.Scaffold18142   82265 0 +   343467 C
e cb4.chrX              8767641 1096 + 21540570 I
e caeSp111.Scaffold630  5768636 136 + 20921866 I
e caeRem4.Crem_Contig0   768562 0 -  4500979 C

a score=-347.000000
s ce10.chrX             3653257 17 + 17718866 aataattttattttaaa
s caeSp111.Scaffold630  5768772 12 + 20921866 agta-----attttgaa
i caeSp111.Scaffold630  I 136 C 0
s caePb3.Scfld02_0      2038599 12 +  4147112 AATA-----GTCTGCTC
i caePb3.Scfld02_0      I 831 C 0
e caeJap4.Scaffold18142   82265  0 +   343467 C
e cb4.chrX              8767641 1096 + 21540570 I
e caeRem4.Crem_Contig0   768562  0 -  4500979 C

a score=-4434.000000
s ce10.chrX             3653274 23 + 17718866 tttataaatttt-------aataaaataaC
s caeRem4.Crem_Contig0   768562  9 -  4500979 -------------------ACCAAAATc--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5768784 27 + 20921866 tttcaaattttttggg---aacAGAACGAA
i caeSp111.Scaffold630  C 0 I 13
s caePb3.Scfld02_0      2038611 23 +  4147112 CTTCAAATTGCT-------accatattgat
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18142   82265 25 +   343467 TTCGGAAGTTTTATGGTTAAATAAG-----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8767641 1096 + 21540570 I

a score=177840.000000
s ce10.chrX             3653297 513 + 17718866  
s cb4.chrX              8768737 554 + 21540570  
i cb4.chrX              I 1096 C 0
s caeRem4.Crem_Contig0   768571 548 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5768824 512 + 20921866  
i caeSp111.Scaffold630  I 13 C 0
s caePb3.Scfld02_0      2038645 527 +  4147112  
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18142   82290 607 +   343467  
i caeJap4.Scaffold18142 C 0 I 464

a score=56543.000000
s ce10.chrX             3653810 131 + 17718866 TGGTTCATGTTGCAA-TGTCAATTGCTAATTCGAGATTTGTAAGCATGTCTTTTAACGTTAGGT--GTTTCGTGTAATATTGTAAATGTAAGACATTGATATCCAAACGTTCAAAGTTTAATAGTTCACATTAA
s cb4.chrX              8769291 129 + 21540570 TAAACGATATTACAC-TCATATCGGCtaattcgagattttcaagcaTGACTGATAAGGCTTGATCAGAAAAGTGTAATGTGTTGAG---AAGATG-TGATACTCGAACTTCCAAAGTTCAATAGATGATAGTGA
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig0   769119 124 -  4500979 TAAACGATGTTACAC-TCATACCGGCTAATTCGAGATTATCAAGCATGACTGATAAAGCTTAAT--GTACAGTGTAAAGTGGTGAG---AAGTCG-TGATACTCGAACTTCCAAAGTTCAAGAGATGACAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769336 129 + 20921866 TTAACGATATTACAC-TCATATCGGCTAATTCGAGATTATCAAGCATGACTGATAAAGCCAGATAACCATAGTGTAATGTCGTTAA---AGGTAG-TGATACTCGAACTTCCAAAGTTCAGAAGATGGCTTTAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039172 128 +  4147112 TAAGCGATGTTACACATCATACCGGCTAATTCGAGATTATCAAGCATGACTGATAAAGCTTGATAGGC--AGTGTAATGTCATAAA---AAGGCA-TGATAGTCGAACTTCCAAAGTTCAGTAGATTACCTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=-18727.000000
s ce10.chrX             3653941 115 + 17718866 GAAAAATATGTGCTAGTGTATTATAGGAACGCAGTGCTTTCAATTTT--------AAATTGAAATTGCATTCAATTTTTTTTGAATGTTAGCAAACTACGGTCAAGATATATCTAAAATTCAA---------
s caeRem4.Crem_Contig0   769243  57 -  4500979 -------------------------------------------------------GCAACGATGTAA----CAACATCGTCGGTACTTCTGCAAACAA-------AATATAtgcaaaatgaaa---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769465  74 + 20921866 AAAGA-----------------------------------CA---TGACTAACGAAAAGTGA----------GAGTTCGTAGT-------GAAAACTGGTTGATTACTATTGTAATTATAAATGAAATT---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039300 101 +  4147112 TAGGAGTAGTTG--------------------ATTGCCTTCagattgaataaataaaactaatatga----gaaaatcgaaag-------ggGAAGAAATATATGAACATAGACAAGAAggagaacattgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82897 464 +   343467 I
e cb4.chrX              8769420 117 + 21540570 I

a score=-9069.000000
s ce10.chrX             3654056 71 + 17718866 GTAATTTTCCACTTT-----------------ATAATGCGCAGTCCTAGACCTGGAGGATGTCTTATAACGGCCTGAAAAGTACAAAA
s cb4.chrX              8769537 85 + 21540570 ggaattttctgtttGGGAATGTCAAAACGCCCAAAAAGTGCAATCCCTGCACT---TGGAAAGCAATGTTCaccttgaaaaatctgaa
i cb4.chrX              I 117 I 44
s caeRem4.Crem_Contig0   769300 39 -  4500979 -caacttcATG---------------------AAACAAGGTAGTTACGGAAC---------------------------AATTCAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2039401 29 +  4147112 -----------------------------------------------------------aatctaaaatgaactataaaaaaacaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82897 464 +   343467 I
e caeSp111.Scaffold630  5769539  0 + 20921866 C

a score=-3214.000000
s ce10.chrX             3654127 15 + 17718866 ACAGATAGAAGGTCT--
s caeRem4.Crem_Contig0   769339  5 -  4500979 ------------TTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769539  4 + 20921866 -----------GTCA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039430 12 +  4147112 ---aaaaatcagtca--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82897 464 +   343467 I
e cb4.chrX              8769622 44 + 21540570 I

a score=-28839.000000
s ce10.chrX             3654142  83 + 17718866 TTCCCATGAA----TTCCGGATTTCATCAGACCGTCCTGACATTGGCCAAAATCTACAGAAGTAAACAGC------------------------------AAAGGTTC------------aaatat--aat-----
s cb4.chrX              8769666 133 + 21540570 ttcctgtaaaatatttcaaaatttagtca-actgataaaatattggtaatattatatttaaaatattggtaatattatatttttttttcagtctcgtttcgaaggttttgaaaaaaaaagaaatac--aatTTAAT
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   769344  47 -  4500979 ------------------------------------------------ATACTGTATTTTACCTGTTA-----agtgtattt----------------------------------aaaaaaattt--aatctact
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769543  50 + 20921866 --------------TTTACGATT--------------------TTTTATGAACGCatcttccaaattttc---------------------------------agatc------------gaagCT--GAT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039442  87 +  4147112 --------------ttGAAATCTCAG-----------------CTTTGGTAATTTATCTTATCAATTATCTTGGgccctttt------------------gaaaaatctgtgtgaaaaaagaagttcagaTATAGT
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=-8913.000000
s ce10.chrX             3654225 47 + 17718866 t------------aatttatat----------------taGAAATGCATTCTGTTGGTAACTTTTTTGGAGAAAT
s cb4.chrX              8769799 70 + 21540570 TAGTTGGTACACGAAATTGTCTCACATTGATCTGTGCCTTCGAATTTATTTGgcatttggattttc-----aaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   769391 31 -  4500979 ---------------attgttt----------------ttgaaatttatctCGAA--------TAC-----aaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769593 20 + 20921866 -------------GAGTTGGAT----------------GATGGATGAAC--------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2039529 45 +  4147112 I
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=-25354.000000
s ce10.chrX             3654272  60 + 17718866 -----------TAAATAATTAT-----AA----------------------------------------------------------CAA-ATATTTTCCA--------ATTTTACCATTCAAACATAGATAGCAATATGCAA----
s cb4.chrX              8769869 128 + 21540570 ata--acttttcaaatgaaaacCAGTAAAGTGTCTTATATACCGTATCTCCCCctataaaattcaaactttcacctttgaacttaattatctcgatttccgtGGAACATAT-----------------CAGAAATTTATCTACTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   769422  61 -  4500979 aaactaattttcaaacCAATATCAGTGAA----------------------------------------------------------TAT-TTGATTTC----------AT-----------------CACAAGAATGTATAgtatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769613  25 + 20921866 ----------------------------A----------------------------------------------------------AAA-CCGTTTTACG--------GT-----------------GAAA------CACAA----
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2039574  43 +  4147112 ---------TACGGA-------ctttgaa----------------------------------------------------------taa-atgattttca--------at-----------------gatAGCGATTTTCAG----
i caePb3.Scfld02_0      I 45 I 35
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=-7220.000000
s ce10.chrX             3654332 41 + 17718866 CTAGAGGATAAAATTAAAAAA-------------AAAACGATTTTGTCAAGTAA----
s cb4.chrX              8769997 50 + 21540570 -----GAATTAATTTCCATAATATGACCagtatttcatcag-ttgacaaaatttgg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   769483 32 -  4500979 -----tga-----ttcaaaaa-------------ccGCCGG-TTTATGACGTACGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769639 38 + 20921866 ------GAtcacattgaaaaa-------------acaacag-aacccgagatttttga
i caeSp111.Scaffold630  I 1 C 0
e caePb3.Scfld02_0      2039617 35 +  4147112 I
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=-56575.000000
s ce10.chrX             3654373 317 + 17718866 ATTTCAAAAATAAAAGGGT-------------CAAATTACTCGGCAACTGTAATTATTAAATT----GTT---------CCAAATTTTCCAATTTCTTGAATCCCTTTGA-------AAATTTGTATTTAT---------------------TGCCGATAAATGG------------------------------------CTCAATCCAACCATGTTTTATTTTAATTATCTACACCAGGAACTTATTATTTTT----CAATCTGTTCTTCTTGTCATTACCCAACTGTTGAATGA-----------------------------CCTAGTGTC-----ATAATAAC-ATTTTGCACTTGATTGACATGACATCACTAT--CC---TTGATAACATTT------TCGGAAGTTCCCCTTTTT--CGATTC-AACCCCAGCGGAACATCTTCAAAAGAC-G
s cb4.chrX              8770047 441 + 21540570 atatctctgataggagataattgagctcaaatttgactgtTTG--AGTGCAAGcaatcaaatttgagctcattttgtaAACAATT-TGTAaactgctgaaattttggcgATGTTATgacaattaatttttcagttgacatacttttgatattttctacagaaaccgagataattgagctcaaagtcgagGGTTTGAATTGACTTATATTGAACAAATG--ACGGTATGTATGAACCCAAACGACTGAATCGTTGTTTCTCTACTT--------TTGAATTCTGGGTCTTCAACACAATGTACTCTGTTCACTgttcttttgaaaatgcaGTTCCCGACGTTCAATCAA-ATTTTGCACTTG---TAAATGACATCATGTT--CTAATTTGATAACA-TTAAAAAATggcattttcattttcccaccGATTCAAAAAAGATCGGAAAGTCTTCAAAAGAGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   769515 283 -  4500979 TCTTCATGCACGTAAGCTA------CTCA---TCAATTATTTA--ATTAGTGCCTATCA--------CTC---------ACAATTATGACATATTTTAAAATCTT------------AAACTTAATTCTAC---------------------TCCTGGAAAACCCAACAT-------------------------------TTTAGATCATGCAGATA-------------------CAACAAC-GAACAGTTTT-------------------GGCATTCTACACCTCCAG----------------------------------GCAATCTCC--------atcaacattttgaacttG---GACATGACATCATCTCCACTAATTTGATACCACctaaaaaactacaaaatgcATTTCTCATCCATAC-CAAAAGATCGGAATATCTTCAAAagat-t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769677 155 + 20921866 -----------------------------------------------------agatta--------aaC---------ACAAAG--------------------------------AAA--------------------------------TAGTCAAAAACCT------------------------------------TACACTTCGACCAAA---------------------------------AGTTAT----CCACCT---------------------------------------------------------------TGTTTTT---GTCCAATCAC-AATTTGCACTT----ACAATGACATCA------CCGATT--ATACCCTCCGTAc----------------tttc--ctattt-tcaaaaatcggattATCTTCAAAAggc-t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039652 230 +  4147112 ---------------------------------------------atttcagaaaattccgtT----AGT---------GCCATGTTTTCCTGATCTGAATTCCt------------aaa--------------------------------taccgaaaaatttaCAGAAGTTGAAC-----------------------TGCACTCTGGTT-------------------------------------GTtgt----caacat-------tttgaattcc--------------------------------------------tcTGATTTC---TTCTGATAAC-AATTTGCACTC----TACATGACATCATCCT--CTAATTTGATACCATACAAACAATACCGAATGCTTCTTTTC--CCATTC-CAAAAGATCGGAATATCTTCAAaagat-t
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold18142   82897 464 +   343467 I

a score=241939.000000
s ce10.chrX             3654690 270 + 17718866 TTCACTTTT------ATTTCCCACGCGACGAGGAAAGCATTATCAATCAACA--AATGCAAAGCAGTGTGACAGAAAGAT-------------CTGCGTTCGACTTCTGAAAGATGATAGACGAACGTTCAGAGACCGGCAGGTCATGACGTACGCCCTT------CTCATATTTGTCTTTAATTAGTCCAGTTTACAGAACAAGTCTATAAATACCAAATGAATTAGGCCGAGATTCCCATTCACAT--------GATGACTTCTCTAATCACATACAT---AACGTTTGTG---GTGTTTATTAAAGGT
s cb4.chrX              8770488 300 + 21540570 TTCGTTTTTTATCG-TTTTCCCAGATGATGAGGAAAACATTATCAATCAACA--AAAACGAGGCAGGGTGACAGAGATATCTGCCTGCTGCTACTGCATTCGGTTTCTGAAAGATGAGAGACAAACGTTCAGAGACCGTCAGGTCATGACGTACGCCCTTCCTCCACTCATATTTGCCTTTAATTAGTCCAGTTTACAAAACCAGTCTATAAATACCAAGCGAATTAGGCCGAGATTCTCATTCATAC--------AATGCTTTCCGTAATCAGCTACCTACCACTGATAACTACTGTTCTCTTTCAAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   769798 282 -  4500979 ttcgttttctatCGTTTTTCCCAGATGATGAGGAAAACATTATCAATCAAGT--GAGGCAAGACAGTGTGACAGACAT---------------CTGCATTCGGTTTCTGAAAGATGAGAGACGAACGTTCAGAGACCGTCAGGTCATGACGTACGCCCTTCCTCCGCTCATATTC-CCTCTAATTAGTCCAGTTTACAAAACTAGTCTATAAATACCAAGTGAATTAGGCCGAGAATCTCATTCACAC--------AATGCTTTCTGTAATCAGCTACCT---ACTGTTAGCTACAGTTTTTATCAAAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5769832 274 + 20921866 ttcattttctatca-ttttccc---aGATGAGGAAAACATTATCAATCAACA--GAAGGCACGCAGTGTGACAGATAAAT-------------CTGCATTCGGTTTCTGAAAGATGAGAGACGAACGTTCAGAGACCGTCAGGTCATGACGTCCGCCCTCCC----CTCATATTTCCCTCTAATTAGTCCAGTTTACAAAACTAGTCTATAAATACCAAGCAAATTAGGCCGAGATTCTCATTCACAC--------AATGCTTTTCTCAGTCATTTACCT---ATCATTAACT---GTTCTCATTCAAGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2039882 281 +  4147112 ttcgttttctatca-GTTTCCCAGAAGATGAGGAAAACATTATCAATCAACA--GAGGGAAGGCAGTGTGACAGACATAT-------------CTGTATTCGGTTTCTGAAAGATGAGAGACGAACGTTCAGAGACCGTCAGGTCATGACGTACGCCCTCCACCCGCTCATATTTCCCTCTAATTAGTCCAGTTTACAAAACTAGTCTATAAATACCAAGCAAATTAGGGCGAGATTCTCATTCACAC--------GATGCTTCCCTCAATTATCTACCT---ACTTTCAGCG---GTATTCATTCaaggt
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold18142   83361 276 +   343467 -TCCTCTTTTAGCA-TTTTCCCAGATGA--AGGAAAACAATATCAATCAACGGCGAGGGAGAACAGTGTGACAGA------------------TCGGCTTCGGTTTCTGAAAGATGAGAGACAAACGTTCAGAGACCGTCAGGTCATGACGTACACCCTC--GTCGCTCATATTTCCCTCTAATTAGTCCAGTTTACAAAACTCGTCTATAAATACCAAGCAAATTAGGCCGAGATTCTCATTCGCACCCTTGCATCATGCTTCCTTCAGTT-----CCT---ACTTGTTTGT---GCTTTTGCTACTGAT
i caeJap4.Scaffold18142 I 464 C 0

a score=-8662.000000
s ce10.chrX             3654960 27 + 17718866 AAAAGTTTTAAAAGT-TCTGACTTGCTC-------
s cb4.chrX              8770788 14 + 21540570 -----------GAGT---TGCTTACTTC-------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   770080  5 -  4500979 -----------AA------------CTC-------
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  5770106 15 + 20921866 -----------AAGC--ATGTTCTTCTC-------
i caeSp111.Scaffold630  C 0 I 9
s caeJap4.Scaffold18142   83637 35 +   343467 AACAGGTTAACTAGCATACGTGTAAATCACGATTG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2040163 27 +  4147112 I

a score=225688.000000
s ce10.chrX             3654987 507 + 17718866  
s cb4.chrX              8770814 491 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   770106 498 -  4500979  
i caeRem4.Crem_Contig0  I 21 I 6
s caeSp111.Scaffold630  5770130 496 + 20921866  
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2040190 494 +  4147112  
i caePb3.Scfld02_0      I 27 I 3541
s caeJap4.Scaffold18142   83672 483 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=273.000000
s ce10.chrX             3655494 1 + 17718866 T
s caeSp111.Scaffold630  5770626 1 + 20921866 t
i caeSp111.Scaffold630  C 0 I 3150
s caeJap4.Scaffold18142   84155 1 +   343467 t
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e cb4.chrX              8771305 0 + 21540570 C
e caeRem4.Crem_Contig0   770604 6 -  4500979 I

a score=-1648.000000
s ce10.chrX             3655495 16 + 17718866 ACAATTGAG--------------AAATAAA
s cb4.chrX              8771305 22 + 21540570 -CGTTTGTT-------CTTTCATGaataaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   770610 30 -  4500979 ACATTTGTTGCCTGCCATTCCCTCCATAAA
i caeRem4.Crem_Contig0  I 6 C 0
s caeJap4.Scaffold18142   84156 16 +   343467 --------------cgggtcctaaaataaa
i caeJap4.Scaffold18142 C 0 I 992
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeSp111.Scaffold630  5770627 3150 + 20921866 I

a score=1399.000000
s ce10.chrX             3655511 8 + 17718866 TATTAAAT
s cb4.chrX              8771327 8 + 21540570 tatttaat
i cb4.chrX              C 0 I 16022
s caeRem4.Crem_Contig0   770640 8 -  4500979 TATTCAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e caeSp111.Scaffold630  5770627 3150 + 20921866 I

a score=650.000000
s ce10.chrX             3655519 39 + 17718866 AAATAG--TTGTGCATTTG-AAAAGCTTGAAATATAATTTTT
s caeRem4.Crem_Contig0   770648 39 -  4500979 TGACAAATTTGTGTATTCGTAAAAGTTt---ataaagttttt
i caeRem4.Crem_Contig0  C 0 I 2933
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5770627 3150 + 20921866 I

a score=0.000000
s ce10.chrX             3655558 171 + 17718866 AACATTATATTCAAAATTTTttcaaaaagagcttgaaatttgtaacaaagtttctgaaagaAACGGTGAAAAAAATTATTTTGAAGTGGTTTAAGAATTTTTAAAGTCTTGAAAATCTATGCTATTGTTCATTTTCAGATAAAAAGCTTGAAAATGAAACTAAGAAGTGTC
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5770627 3150 + 20921866 I
e caeRem4.Crem_Contig0   770687 2933 -  4500979 I

a score=279.000000
s ce10.chrX             3655729 89 + 17718866 TATTTTTATAGTAGACGATTTTCATGGAAGATAACAACTTTCAAAACAAGGCCATCTAGATTTATTAGCGCCCAGCCGCCTAAAAGCAA
s caeSp111.Scaffold630  5773777 62 + 20921866 TACTTTCATA----ACGCATTTGTCGAAGgacatttgatttcaaaac-------------tctaTAAGCGTCTACGCGC----------
i caeSp111.Scaffold630  I 3150 C 0
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeRem4.Crem_Contig0   770687 2933 -  4500979 I

a score=545.000000
s ce10.chrX             3655818 7 + 17718866 TATTGGG
s caeRem4.Crem_Contig0   773620 7 -  4500979 TATCTGA
i caeRem4.Crem_Contig0  I 2933 C 0
s caeSp111.Scaffold630  5773839 6 + 20921866 -ATTGAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2040684 3541 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I

a score=19043.000000
s ce10.chrX             3655825 173 + 17718866 CCAGTATCATGCGACCTTTTGCGAGAGGAAG-----------------------------------------------AGAACAAT-------TGAAC-GGGCCCCTGCAATCGCAAAGAGAGGTCGCATTCACTTGCGCACGCGAGTAATGCC------ACTGCATTACTACCCACACCAGATGTTGTGTTATCGAGCGCTCATAATTA---TTTTTCTATAATTTCTTTTTCTTG
s caeRem4.Crem_Contig0   773627 220 -  4500979 CCAATATCATGTGACCTTTGGGAAGAGGGACTGAGAAGAGTAGAAAGAGAGG-ACGAGGGACTAATGTTG----CACGAGAACAATCAACAACCGAACGGGACCTC--CAATTGCGAAAAG-GGCCGCATTC-CCTACGCACGCGAGCTGTGTATTCCT-CCTTC--TCTCACCCATGAGA-ATGTTGTTTTATTGACCACACACCATCC----AACTTCatactttatttttattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5773845 175 + 20921866 CCAGTATCATGTGAccttttgagagagagag----------agagagaga---aagaga------catTG----CAAGAGAACAAT-------CGAAC-GGACCCT--CAATTGCGCAGA--GACCGCATCC-TATACGCACGCGAGCAAAGCCTTCTTGCCTCT--TCTCCCCCAGACTA-ATGTTGTTTCATTGACCACAC-----------------------CGTTTTTACTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2044225 198 +  4147112 CCAATATCATGTGACCTTTTGAGAGAGAAAC----------GGGAAGAGGGGTACGAGA-------ATTGGCCCCCCGAGAACAATCGACAGCCGAAC-GGACCCG--CGATTGC---------CCGGACTG-CACACACATACGAGCATCGCC------CTTCC--TCTCTTCGATGCTA-ATGCTGTTTTATTGACCGCACACCGTCCTTGTGGTCCTATGTGTTGTTTTTTATG
i caePb3.Scfld02_0      I 3541 I 198
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I

a score=-12316.000000
s ce10.chrX             3655998 257 + 17718866 GAGTTAAGCGTAAATGTCACATTTTTGTTCACGTTATTTAAAAACCTTGTTTCAAAAATTTGTTAAT-----TGTTTTCAAGTTATCTTCAAAACAATACAATTGTTGCTCACAAACTAGCTTTTACCATTTATGTTTATTTGCT--------------CCTTAATATTT------GAATATGTATATTTTATCTAAACTTTATCTATCTTTAAAAAAAACTCTAAAAATATTATCTCTAAATAGACCAATACATTTCAAGTA---ACAGTTCAAATTTTGTATT
s caeRem4.Crem_Contig0   773847 188 -  4500979 -----------------gaagtttttcat------------------------tgaggttttccttt-----aatttcaat----------gaacaat-----------tttttgaatag-------gaaAAATATCTATTCGCGTTGAATATGTGTTACATTTATTCGTGTTATAGAAAATTAGGAGCATTTTTCCACAGTTT---CATTC--------CTTTTGCACTTTTGT-TCAAATTAGCTC------CTATCGATACGTGcagtaattatttt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5774020 202 + 20921866 ---GTCCGCATCATTGTAACTTGTTTCATCAT------------CATTGCTCCTCATGTTTTATTTTGgtacaatctgaaaatatactGTAGGACAAT-----------TTGCCAAATTG------CCAACAATCTGTATTTGCG------------------GATTCGT------CAAACTCAAAATCATAATTatactatttttgttttt--------cttttatgttctttt-tcataataacca------ttttaagttc--ccagt-----tttt-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2044423 198 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I

a score=33980.000000
s ce10.chrX             3656255 151 + 17718866 CAGCATGGTCAGTCCAAAATCGATACAGCAAAAAGAGGAGACGACGGAACATGTGGAGGCGATTAAGGAGAAACGCAAGAAAAAGGGATCTCGTGGTGAAACCGTTGCGGATAGGCTCATTGCTTCAGCAAAGCGAATGGAGCAATTAAGA
s caeRem4.Crem_Contig0   774035 145 -  4500979 cagaatggccAGTCCAAAACA---ATCTCAACAAGAAGACACGTCAAATGAAAGTGAtgc---aaagaaaatgagaaagaagaaagggTTCAGAGGAGAAACAGTGGCCGATAGGTTATTGGCGTCAGCAAGAAGAATGCAAGAGAtgaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5774222 148 + 20921866 cAGTATGATCAGTCCAAAATCGATACCTTCAAAAGAGGAACCAGCAAGTGATACGAAAGC---AAAGAtagggaaaaagaagaaaggataCCGAGGAGAAACAGTTGCGGATAGACTATTGGCGTCGGCAAGACGAATGGAACAAGAGAGA
i caeSp111.Scaffold630  C 0 I 133
s caePb3.Scfld02_0      2044621 148 +  4147112 CAGTATGGTCAGCCCCAAACCGATgcctgaaaaagaagaaccgaCGAATGAGACTAATAC---TaagaaaattcggaaaaagaaaggaTTCCGTGGGGAGACAGTTGCCGATCGACTTATCGCTTCAGCCAAAAGAATGCAGCAGTTGAAG
i caePb3.Scfld02_0      I 198 C 0
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I

a score=626.000000
s ce10.chrX             3656406 9 + 17718866 ATTTCTGAA
s caeRem4.Crem_Contig0   774180 9 -  4500979 atatctgaa
i caeRem4.Crem_Contig0  C 0 I 299
s caePb3.Scfld02_0      2044769 9 +  4147112 TTGACCGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5774370 133 + 20921866 I

a score=20.000000
s ce10.chrX             3656415 236 + 17718866 G----------CAG--------CAAAGAACACTGACGCTAA---AAAAAATGTTGA---------TGATCCTGTGAAGCCCGTGGAAAAAGTTACACTCAATACTAAAAAATGTGTTAAACTTGGTGAGTTGTTTGGCTTCAGAACCTCTGATACGTCAAAGTAAATTTCAGTCAAACTGTAATCTGATTTAAGACATGTGAGAATTGTAGTATAGAAGAAATATTATTCGAAAAATATCAGATTTTCGGATAATCCTAGCTCCAA
s caePb3.Scfld02_0      2044778 215 +  4147112 GAATTGAATGCCAGGAAATCTTCAGAGAACGATGAAGAAAAGCAAGAAAgagttgaaaacaaagatgaaCCTGTGAAGCTTaccaaaatgg-------aaaaactgaaaaaaggtgaatattttctgaattatt-------------------atgttaaaatta-------ttgaact------------------tggccgattttttgaagaaaagaactgCTGTTAGAGAAACACAGAATTGCCGAGTAGCAAATGCTTCAA
i caePb3.Scfld02_0      C 0 I 81
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5774370 133 + 20921866 I
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=0.000000
s ce10.chrX             3656651 74 + 17718866 GACTTTTCCAAAATTTAAAGAAAATGTAAGTTCGGAAATGTGACACTCGGTATTATACATATATTTTGTCTCTC
e caePb3.Scfld02_0      2044993 81 +  4147112 I
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5774370 133 + 20921866 I
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=-887.000000
s ce10.chrX             3656725 343 + 17718866 TGTGCAGTTTGAAATTTTAAATTTCATAAACAACTTTTTTTTGTGTTTAATAAACAAATCTGTAAAATTTCGCGCTTTTA----GCTACTCACTATCGCTAAATCGTAC-AGGGCTCACTCGGGAAAACTGCGTGTGCCTTTGAAACTGATAAGTAAAAATTTAGCAAAATTACAACGTCAGTTTTTTCCGATATTTTTTTTCCAAACTTTTCTAGTTCCACTTTCAGTTTGAATGCCGGTGCTGAAACTAAT-------------AGTGTCCAATTTCTTCGAGAAAAAAAAACCTGAAAGAAGTGGTTATAGGTTCAGATCATTAATTTTTTTGAGCAAATTTACTGT-CGACATTTTTG
s caePb3.Scfld02_0      2045074 310 +  4147112 tgagtgaaaaaaagtgtttaattGCATAAA--ATATTTCCTAGTGTCCaacatg-aaatttattttgtattACAATTTTTTCGTGTTACCGGTTATGCGTAAGCCGTATTACGTATCATTC------------TGTTCTTCGATAACTAAT--GTAGTAATT----AAAACTGGTATGCAAATT-----CAACATCCTTC--CCGCAGCTTTTCAGTGGCGAGTTGACGTTGTTAGCG-----TAAAACTAATTTTCGTACAATATAGGGAACATTATGTTCGAAATAGATAAGCTCATAA--------------TGCACACTACAAATTT-----AGGAAAGGTTCTGTTCAACAGTTTCC
i caePb3.Scfld02_0      I 81 C 0
e caeJap4.Scaffold18142   84172 992 +   343467 I
e cb4.chrX              8771335 16022 + 21540570 I
e caeSp111.Scaffold630  5774370 133 + 20921866 I
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=-1180.000000
s ce10.chrX             3657068 8 + 17718866 TTTTCAA-T
s cb4.chrX              8787357 8 + 21540570 TCCTCAAA-
i cb4.chrX              I 16022 C 0
s caePb3.Scfld02_0      2045384 4 +  4147112 ---TCTA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   84172 992 +   343467 I
e caeSp111.Scaffold630  5774370 133 + 20921866 I
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=-3824.000000
s ce10.chrX             3657076 33 + 17718866 TTTTAAGATCTAAATCTGTTTCAGATTTTGACT
s cb4.chrX              8787365 29 + 21540570 TTTTACAGtcaatgattttttctgatc----AC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5774503 23 + 20921866 tcctgaaatcaaaatgttcatct----------
i caeSp111.Scaffold630  I 133 C 0
s caePb3.Scfld02_0      2045388  7 +  4147112 --------TTAAAGT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   84172 992 +   343467 I
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=-2569.000000
s ce10.chrX             3657109 8 + 17718866 --TCTCTTTT
s cb4.chrX              8787394 7 + 21540570 --TCAATTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5774526 8 + 20921866 --tccatttt
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2045395 5 +  4147112 -----ATATT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   85164 8 +   343467 TTTCTATC--
i caeJap4.Scaffold18142 I 992 C 0
e caeRem4.Crem_Contig0   774189 299 -  4500979 I

a score=114253.000000
s ce10.chrX             3657117 499 + 17718866  
s cb4.chrX              8787401 544 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   774488 546 -  4500979  
i caeRem4.Crem_Contig0  I 299 I 14
s caeSp111.Scaffold630  5774546 533 + 20921866  
i caeSp111.Scaffold630  I 12 I 4
s caePb3.Scfld02_0      2045401 505 +  4147112  
i caePb3.Scfld02_0      I 1 I 64
s caeJap4.Scaffold18142   85172 629 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-12548.000000
s ce10.chrX             3657616 68 + 17718866 CTATA-TAGACTTGTTATAAAAAAGTA---GTAGCTAAAATTAAAAAAAGTTTCTGGTTACTTTTGG-TGTTG-
s cb4.chrX              8787951 35 + 21540570 CTATA-GTTGCAAGTT-------------------------------GCATCTCTCCCAAGTTTTCT-------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   775048 49 -  4500979 CTATA-GTTGCTATTT------AGGTA---GTAGC--------AATAAAACTACTGGCGAGTTTTCT-------
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold630  5775083 55 + 20921866 ttgtatatttttagtt------aggtatttgtaac-------aaataaaaactttctcagtttttctg------
i caeSp111.Scaffold630  I 4 C 0
s caeJap4.Scaffold18142   85801 43 +   343467 ATGTG-TATACTCG--------ACGTT---GGACC--------AAAAAA-----TAGCAAGTTTTCT------G
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2045906 64 +  4147112 I

a score=84245.000000
s ce10.chrX             3657684 179 + 17718866 GATCCGTTTCCTGTCACGACCCCC--GTAAGAAAAACCTTTCCACTCAGACT--TTATACTCTC--TT--------------------AAAATATTTC--ATGTATATGTGTGCATGCAAACTTGCTCCGGAAGTTGCTAA-GTTTTTGAATCG-C--------CATTTT--------TTGAGTTTTCA----TGTCGGACTATACTTTTTGTCAACCAGT----GTTGCAAT
s cb4.chrX              8787986 173 + 21540570 GCTCGATTTCCTGTCA------------------------TGTTCTTTGTCAAGGTATTTCTTCATATCCAG--Accaccaa------aaaatatttcatatGTATATATGTGAATGTATACTTGTACCGGAAGTCTATGTCttttttgactcgccttgtta--tttttt--------ccaactttt-------ttcatacTATACT-----------AAATAGCATTACACT
i cb4.chrX              C 0 I 72
s caeRem4.Crem_Contig0   775097 189 -  4500979 GCTCGGTTTCCTGTCATGCcacca--gaagaagaaaaatttgttcTTTTACGA-TTATTTCTTC--ATCCAA--A-CACTGGGACCC-AAAATATTTC--ATGTATATATGTGAGTGTATACTTGTTCCGGAAgtcaatgacttttttgattcg-cttgtta--tttttt--------ccgactttt-------ttcatACTATACT-----------AAA----ATTGCAAC
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold630  5775138 194 + 20921866 -CTCGGTTTCCTGTCACGCCGCCatgagaggaaaaaaatttgttcttTTACGA-TTATTTCTTC--ATCCAG--ACCCTCCAGAcccaaaaatatttc--atgtATATGTGTGCATGTATACTTCTTCCGGAAGTCaatgacttttttgattcg-attctta--tttttt--------ccaactttttc-----ttcaaactatACT-----------AAT----ATTGCAAC
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      2045970 197 +  4147112 GCTCAGTTTCCGGTCATGCTTACCT-AGAAGAGAGAAATTTGTTCTTTTACGA-TTATTTCTTC--ATCCAG--ACCCTCGAcacccaaaaatatttc--atgtaTATATGTGCATGTATACTTGTTCCGGAAGTCgatgacttttttgattcg-cttgttatttttttt--------ccaactttctc----tTTCGTGCTATACT-----------AAT----ATTGCAAC
i caePb3.Scfld02_0      I 64 I 10
s caeJap4.Scaffold18142   85844 194 +   343467 -CTCGGCTTCCTGTCATGCAACCAT----AAAGAAAAATTTCTTCTTTTACAA-TTATTTCTTC--ATCCAACCACCACATGGGCCCAAAAATATTTC--ATGTTTATATGGGCATGTATACTTGCATCGGAAGTTGCTTACTTTTCGGAAtca-tttgata--ttttttgggGTATCGTGCCTTTTTCACCTATCTATGTTATGCT--------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-22870.000000
s ce10.chrX             3657863 67 + 17718866 ACAACT----GCAC--------------------AAAACTCCGTCATAAGATTTATTGGAT------CTGAAAACTGATTTC-TTAT---------AGCTCACTGAC
s caeRem4.Crem_Contig0   775306 84 -  4500979 AAAACTTAAAACAC---------------------GAGTACCGTTTTGATG-CCACCTGATGATAGTCTATCAGGTTGTTTC-TTTGAACACATCTCATTCACTCCC
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold630  5775342 56 + 20921866 TCAACTGACAGCAT-----------------------ATTTCGTATTGG------------------GTGcaagattttttc-tttg---------tattcACCCTC
i caeSp111.Scaffold630  I 10 I 2
s caePb3.Scfld02_0      2046177 78 +  4147112 AGTACAAGAAACACCCACGAAATCCGAAGAAAACTGGATTTCgtgct--------------------ttgaaaaatatctccGTTCA---------CCTCTCCTCTG
i caePb3.Scfld02_0      I 10 I 2
s caeJap4.Scaffold18142   86038 38 +   343467 ------------------------------------AAttctaattt---------tcgaaaataatgtGGAATATCCCTAA-C-----------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8788159 72 + 21540570 I

a score=219668.000000
s ce10.chrX             3657930 313 + 17718866 GTAATTTATTAAATGTTACGTAGCA----------------AAAAAAGATGAAGCAAGTTTTAAGA-GTAGGTC--AAGTGAGTTATT-GGAGGTAGACTGAGTGGTCAGAAGCAAGGTCCA--------CCACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTG-GGAGGAAAGGCAAGCGCCCGTGCGGTCATCAATTCTTTTGCTGCCCACTTACCAAAAACTATACTTTTTT---TGCCGAATACCACA--TA-----TGTGTTATC-----TTTCCTTTGTTAATCATGCTCAGATGGTTTCTTTGTTGGTGTTGACTAATAGTTTG-TTTCAAGTACAATGACCTTGCGC----
s cb4.chrX              8788231 336 + 21540570 ataattttttgaatgctaCGTAGGTTTTATTGAAGCCCGGTGAAGACGA------AAATTTTAAGAGGTAGGTC-AAAGTGAGCTATTGGGGGGTAGACTGAGTGGTC-AGCAATGGGTCCAGTCCCTCCCAACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTAGGGAGGAAAGCCAAGCGTCCATGCGGTCATCAATTCTTTTGCTGCCCACTTACCCAAAACTATACTTTTTT---GTTCGAATACCAAC--AATTGTGTGTGTTATCTGTGTCTTTTTGCGTTAATCATGCTCAACTTGTCGCATTGT-----TCGACTAGTAGTCTCGTCGAAAGTGCACTgacctt--------
i cb4.chrX              I 72 C 0
s caeRem4.Crem_Contig0   775390 299 -  4500979 ATAATTTTTTGGATGCTACGTAGTT--------------------AGAA------AAGATTTAAGAGGTAGGTCAAAAGTGAGCTATT-GAAGGTAGACTGAGTGGTCAAGAGAAAGGTCCA--------CCACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTA-GGAGGGAAGCCAAGCGCCCGTGCGGTCATCAATTCTATTGCTGCCTACTTACcc-aaactatactttttt---ggGAGAAATACCAC--AA-----TGTGTTATC--TGTTTTGTTGCGTTAATCATGCTCAAATGGTTGCATTGT-----TTGACTAGTAGTTTC-TGACAAGTACACTGCCCTT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5775400 297 + 20921866 GTAATTTTTTAG-TGCTACGTaggt----------------gaaaaaga------aagttttaaGAGGTAGGTC--AAGTGAGCTATT-GAAGGTAGACTGAGTGGTCAGAAGCAAGGTCCA--------CCACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTA-GGAGGAAAGCCAAGCGCCCATGCGGTCATCAATTCTTTTGCTGCCCACTTACCC-AAACTATACTTTTTT---GGGCGAATACCACATTTG------GGgttatc------ttcttttgttaATCATGCTCAGATGGTTGCATTGT-----TCAACTAGTAGTCTG-TTTCAAGTACAACGCcctt--------
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2046257 295 +  4147112 gtaatttttttgatgctATGTCGGT----------------GAATAAGA------AAGTTTTAGAGGGTAGGTC--AA--GAGCTATT-GAAGGTAGACTGAGTGGTCAGAAGCAAGGTCCA--------CCACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTA-GGAGAGAAGCCGAGCGCCCATGCGGTCATCAATTCTTTTGCTGCCCACTTACCCAAAACTATACTTTTTT---GGGCAAATACCAAA--AA------GTGTTATC------TTCTTTCGTTAATCATGCTTAGATGGTTGCATTGT-----TCAACTAGTAGTCTG-TTTCAAGTACAACGCCCTT--------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   86076 281 +   343467 ----TTTTCTAAAC------TAGGT----------------AGAAAATA------GA----------ATAGGTCATAGAATGGCTATT-GGGAAGCAAGTGAGTGGTCACCTGCAGAATCCAA-------CCACAAAACGGAAGAGCATAAAAGGCGCACCTCTGTG-GAAGGAAAAGCGAAGGTCCATGCGGTCATCAATTCTTGGGCTGCCCACTTACTC-AAACTATACTTTTTTGAGGGCTGAATAGCTGA--AA------GTGTTATC--------TTAACGTTAATCATGCTCAAATGGATTCTTTGT-----TG---TGTTAGTCTG-TTTCAAGTACACTGACCTT----ACGC
i caeJap4.Scaffold18142 C 0 I 161

a score=333.000000
s ce10.chrX             3658243 10 + 17718866 TCATTTTTT--T----
s cb4.chrX              8788567  8 + 21540570 --atttttt--t----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   775689  8 -  4500979 --ATTCTTT--T----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5775697 12 + 20921866 --attcatt--tattt
i caeSp111.Scaffold630  C 0 I 255
s caePb3.Scfld02_0      2046552 14 +  4147112 --ATTCATTCCTACTT
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18142   86357 161 +   343467 I

a score=-1980.000000
s ce10.chrX             3658253 4 + 17718866 ----CTTA
s cb4.chrX              8788575 1 + 21540570 --c-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2046568 4 +  4147112 CCCA----
i caePb3.Scfld02_0      I 2 I 234
e caeJap4.Scaffold18142   86357 161 +   343467 I
e caeSp111.Scaffold630  5775709 255 + 20921866 I
e caeRem4.Crem_Contig0   775697 0 -  4500979 C

a score=-40079.000000
s ce10.chrX             3658257 728 + 17718866  
s cb4.chrX              8788576 738 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   775697 336 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2046572 234 +  4147112 I
e caeJap4.Scaffold18142   86357 161 +   343467 I
e caeSp111.Scaffold630  5775709 255 + 20921866 I

a score=-2491.000000
s ce10.chrX             3658985 26 + 17718866 TTTATACCATCTACATTCTTCCAAAA--------
s cb4.chrX              8789314 24 + 21540570 CTTGTCCCCTCtc--ttttccccaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   776033 15 -  4500979 tttatgCTATTTC-----------AC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5775964 25 + 20921866 TTTACGACATCTA---------Cgaccatttttg
i caeSp111.Scaffold630  I 255 C 0
e caePb3.Scfld02_0      2046572 234 +  4147112 I
e caeJap4.Scaffold18142   86357 161 +   343467 I

a score=35898.000000
s ce10.chrX             3659011 63 + 17718866 AAAATTATACTCAT----TCCCGAAACTTGTTCTTTACTT-GAAAGAACTC-AGCAAGATTGATGGAAA
s cb4.chrX              8789338 69 + 21540570 aaaattatactcATACTCTCTCACAATTTGTTCTTTATAAGaaaagaactcaaaaaagatTGATggaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   776048 65 -  4500979 AGAATTATACCCAT----TTCCAAATCTTGTTCTTTATaagaaaataactcaaaaaagatTGATGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5775989 63 + 20921866 aaaattataccTAT----CCCCTAAACTTGTTCTGGACGA-AAAAGAACTC-AGAAAGattgatagaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2046806 63 +  4147112 aaaattatacTCAT----TCCCTAAACTTGTTCTTCACTA-AAAAGAACTC-AGAAAGATTGATAGAAA
i caePb3.Scfld02_0      I 234 C 0
e caeJap4.Scaffold18142   86357 161 +   343467 I

a score=447230.000000
s ce10.chrX             3659074 650 + 17718866  
s cb4.chrX              8789407 652 + 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   776113 642 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold630  5776052 634 + 20921866  
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2046869 640 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   86518 656 +   343467  
i caeJap4.Scaffold18142 I 161 C 0

a score=-7698.000000
s ce10.chrX             3659724 25 + 17718866 -------ATGAA---------GCAA---TATGATTTTAA---GGTAA
s cb4.chrX              8790064 23 + 21540570 -------TTCTC---------TCCAACTCatacttttaa--------
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold630  5776689 29 + 20921866 -------TTCtatgtttcatttcaa---caTGAAAACTA--------
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2047511 23 +  4147112 -------TTTTA---------TCAA---CATAATTAGTAGAG-----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   87174 26 +   343467 ATGAGAATTCCA---------TTTA----atagtttcaa--------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   776755 29 -  4500979 I

a score=132790.000000
s ce10.chrX             3659749 151 + 17718866 TTCAC--GTTTAGGGTGTTTCATCGGTCAAGTTAGTTGTGGTCCAGTTTATTGTGCAGATTACAAAGATGCACTTCCATGTATTGTTTATCCTAAATGTGACGGTTCATCAAAACAACTTCCATGGTGTTCTACGTCAAGTGAGTTCATTTTA
s cb4.chrX              8790087 147 + 21540570 ------tttttagggTGTTTCATCGGTCAAGTTAGTTGTGGTCCAGTGTATTGTGCAGACTACAAAGATGCATTTCCATGTATCCTATATCCAAAATGTGACGGGTCCACAAAACAATTACCCTGGTGTTCAGCATCCAGTAAGTCAAAAATT
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0   776784 149 -  4500979 ttcactgttttagGGTGTTTCATCGGTCAAGTTAGTTGTGGACCAGTTTATTGTGCAGACTACAAAGATGCACTGTCTTGTATTGTATATCCAAAATGTGATGGCTCATCAAAACAGTTACCTTGGTGTTCAGCATCAAGTAAGTTTAT----
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold630  5776718 146 + 20921866 -------TTGAAGGGTGTTTCATCGGTCAAGTTAGTTGTGGTCCGGTGTATTGTGCAGATTATAAAGATGCACTTCCATGTATTGTATATCCAAAGTGTGATGGTTCATCGAAACAACTACCGTGGTGCTCAGCCTCAagtaaattaattttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2047534 151 +  4147112 --TTTCTGTTCAGGGTGTTTCATCGGTCAAGTTAGTTGTGGTCCGGTTTATTGTGCAGACTACAAAGATGCTCTTTCATGCATTGTATATCCAAAATGTGATGGGTCGACGAAACAGTTACCGTGGTGTGCAGCTTCAAGTGAGTTCTATCTG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18142   87200 139 +   343467 -----tttttcagggtGTTTTATCGGACAAGTTAGTTGTGGTCCTGTATATTGTGCAGACTACAAAGATGCACTTCCGTGTATTGTTTATCCAAAGTGTGATGGTTCTTCGAAACAACTACCATGGTGTACTGCTAGCAGTAAG---------
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3659900 10 + 17718866 GGTTTACCTA
e caePb3.Scfld02_0      2047685 10 +  4147112 I
e caeJap4.Scaffold18142   87339  0 +   343467 C
e cb4.chrX              8790234 23 + 21540570 I
e caeSp111.Scaffold630  5776864  0 + 20921866 C
e caeRem4.Crem_Contig0   776933  0 -  4500979 C

a score=-19617.000000
s ce10.chrX             3659910 136 + 17718866 ATAATCTCGATTAGTATATTAGACATTTGAAGGGAGTAACTTCCTGCTAAACAATTGAAAACTGCCATGGAATTTCGTTTGCCAACTTTTTTGGGCAGTTTTTAATAGAGCATGTCAATTATTTAAAAATT--CAGAA
s caeRem4.Crem_Contig0   776933   7 -  4500979 ------------------------------------------------------------------------------------------------------------------------------AAATCAC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2047695  48 +  4147112 ------------GGTAAATTG---ATTT----GGAAACATTTCC--------------------CCATG-----------accaactt---------------------------------ttcaaaaatt-------
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18142   87339  31 +   343467 ---------------------------------------------------------------------ATATTTGttaaactcatttttttt----------------------------ttcataa----------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8790234  23 + 21540570 I
e caeSp111.Scaffold630  5776864   0 + 20921866 C

a score=-18322.000000
s ce10.chrX             3660046 93 + 17718866 TATTTTTATTTTGTCTGAATTTTTGTCATTTGTCTGCAGCTAATACTCAATAGTTGGGAGAAAAAACATACGGGAATAAGTTAGTGAAATTTT
s caeRem4.Crem_Contig0   776940 27 -  4500979 ------------------ATTGTTGTCATA----------------------------AAAAATAGAGttgat--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5776864 27 + 20921866 -----------tatc---ttttttttctct----------------------------attaataatgt------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2047743 20 +  4147112 ----------------------------------------------------------aaaaaaaaaacaaaaaaaca---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   87370 12 +   343467 -----------------taattttgtttt----------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8790234 23 + 21540570 I

a score=123968.000000
s ce10.chrX             3660139 125 + 17718866 AAATTTTCAGAAGAAAAACTATGTGCGGATGAAACGTCATTTCCGTGCAAAGGTTACGGAGAGTGTGTTTTGTGGGAATGGTTGTTAGACGGGAAGAAGGATTGTAACGATGGCAGCGATGAAGG
s cb4.chrX              8790257 125 + 21540570 aaaatttcagaagaaaagcTATGTGCTGATAAAACATCGTTTCCGTGTAAGGGTTATGGAGAATGTGTTTTATGGGAATGGCTGTTGGATGGAAAAAAGGATTGTATTGATGGAAGTGATGAAGG
i cb4.chrX              I 23 I 420
s caeRem4.Crem_Contig0   776967 120 -  4500979 -----ttcagaagaaaaattatgtGCGGATAAGACATCGTTTCCGTGCAAAGGTTATGGCGAATGTGTCTTATGGGAATGGTTATTAGATGGAAAGAAAGATTGTATCGATGGAAGTGACGAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5776891 121 + 20921866 ----tttcagaagaaaaactatgtGCTGATAAAACTTCTTTTCCGTGTAAAGGGTATGGTGAATGTGTTCTATGGGAATGGTTACTAGATGGAAAGAAGGATTGCATCGATGGAAGTGATGAAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2047763 121 +  4147112 ----tttcagaagaaaaactatGTTCCGATAAAACATCTTTTCCGTGCAAAGGCTATGGCGAATGTGTTCTCTGGGAATGGTTGCTAGATGGCAAAAAAGACTGTATCGATGGAAGTGATGAagg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   87382 124 +   343467 -acTGTTTAGAAGAAAACGTATGCAAAGACAAGACATCGTTTCCATGTAAAGGATATGGAGAATGTGTTCTGTGGGATTGGTTGCTAGACGGCAAAAAAGATTGCATTGATGGAAGCGATGAAGG
i caeJap4.Scaffold18142 C 0 C 0

a score=-28597.000000
s ce10.chrX             3660264 70 + 17718866 TATTTTTACTT-----TTAAAAAATTGGCAAATTGAT---AAAAACAATTTTTGATCGCAATAGTATGTAGTGTTATT
s cb4.chrX              8790802 52 + 21540570 tacctttattt-----ttca---------aaatttca---aactaggATCACTGACTTCATTAAcggat---------
i cb4.chrX              I 420 I 90
s caeRem4.Crem_Contig0   777087  7 -  4500979 -------------------------------------------------------------TAACAGG----------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5777012 18 + 20921866 ------TA-----------------------------------AGTAATAACTATTTAC-------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2047884 47 +  4147112 ------tattt-----ttcagttctc-ataaatttga---aacattagtCTACATTTTCATT----------------
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold18142   87506 56 +   343467 ------TATTTAaatgtttaaatattttcatGTTTAATATAAACTTCATATCTATTGACATT----------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-1906.000000
s ce10.chrX             3660334 69 + 17718866 CTCTGGAACTAACGTTTGTAATATTGTTTGAAGAAATATTCTTGTGTGGATTAAACTGGAAATTTGGAG
s caeJap4.Scaffold18142   87562 14 +   343467 TCTTG--ACTA-CGTTT----------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2047931 40 +  4147112 I
e cb4.chrX              8790854 90 + 21540570 I
e caeSp111.Scaffold630  5777030  0 + 20921866 C
e caeRem4.Crem_Contig0   777094  5 -  4500979 I

a score=519167.000000
s ce10.chrX             3660403 873 + 17718866  
s cb4.chrX              8790944 897 + 21540570  
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   777099 875 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5777030 840 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2047971 870 +  4147112  
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold18142   87576 866 +   343467  
i caeJap4.Scaffold18142 C 0 I 34

a score=-2888.000000
s ce10.chrX             3661276  57 + 17718866 CTCCGCCCAGTTACCCGACCATGGG------------------------------------------AATCTGAAAAAACAAAACCTTATCCTGG----------TGTT
s cb4.chrX              8791841  64 + 21540570 TTTCGCCCAATCACCAAACCTAGTGAAGAAC------------------------------------CTGTTGAAAAC---------GAATCGGGATATGGAGAAAGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   777974 106 -  4500979 TTTCGCCCAGTGACTCGACCTCCTGATGAACATTCTGGAATTCCAGAGTATATCCCTCGCAAAGGTAATGTTGAATACCCTGAA---AACCCTGGAAACTCTGTGAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5777870  88 + 20921866 TTCCGTCCAATTACACGTCGACCAGATGAGCACTCTTCAGTTCCCGAGT------------------ATATTGGTCCTCCGGAA---AACCCCGAGTATCCAGAAACTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2048841  88 +  4147112 TTTCGCCCAGTGACACGTCCAACACCAGAACAGCCTGGGATTCCTGGGT------------------ATATTTCAGGAACAGAA---AAGCCAGGAGTCCCAAGTTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88442  34 +   343467 I

a score=278267.000000
s ce10.chrX             3661333  942 + 17718866  
s cb4.chrX              8791905  903 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   778080  957 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5777958  949 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2048929  934 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   88476 1034 +   343467  
i caeJap4.Scaffold18142 I 34 I 447

a score=-3409.000000
s ce10.chrX             3662275 23 + 17718866 TTTGTGGGTATCAAT-TATTTTTC
s cb4.chrX              8792808 18 + 21540570 TACATAAAA-----T-TATTTata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   779037 19 -  4500979 CCTTCGACT-----TCTGttcttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5778907 16 + 20921866 --TATTGGC-----C-TTTTTTCc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2049863 16 +  4147112 --tccaatt-----t-cattttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   89510 447 +   343467 I

a score=196878.000000
s ce10.chrX             3662298 396 + 17718866 AT---AT-------TGGAAG----TTTTTGCAGATTGGTCAATCTTATAAATCGTGCATTCGTTCGGCGGAACATGATTCTGCATTAGTTGCTATTGTTCAATGTAGTGACTGCACTTTGCAAGAGATCGATCGATTGTTAACGACAAGATCATTCGGGGAGCCTGGAAACTTGAATCTGACTGCAGAAGGTGAGTGTGCACA---GCTTATAAACCAT---ATCATGTAAAT---TATT----TCCAGCACTCGGCACTGATCTGTGTTCCAATTCGGAGTTCAATCATTGTCATGTTTACTCGGATTGCATTCTAGATGATGAAAATTTGCGGTATGCGTGTAAATGCAAAAAGGGTACAACAGATAGTTCGGATGGATATGGAAGGTCGTGTGAAGGTTTTCCTGAAGAATCAGAGTAAG
s cb4.chrX              8792826 395 + 21540570 aattcag-------aagaag----agtTCTCAGATTGCTCAATCCTACCGATCTTGCATCCGCTCTTCGGAGCATGAAAACGCATTAATTGCAACGATTGATTGTAAGGAATGTGATGTGCAGGAAGTGAACCGACTGATAACGACCAGATCCTTTGGAGAGCCAGGCACTTTGAATGTTACCGCTGAAggtgatttcgaaa--------ttcgttcgt---ttttaaaagtt---attt---tttcagcacttGGTTCAAGTCTCTGCTCTGATTCCGATTTCAATCACTGTCACGTCTACTCGGATTGTGTTATAGACAATGAAAATCTCCGATATGCCTGTCGCTGCAAGAAAGGAACCACAGACACGTCTGAAGGGTACGGTAGAACCTGTGAGGGGTTTCCAGAGGAGTCTGAGTGAG
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   779056 393 -  4500979 aa---ac-------aaaaaa----gttatttagaTCGGCCAGTCGCATCAATCTTGTATTCGTCCAACAGAACATGATTCTTCTCTAATAGCAACTGTAAAGTGTGAAGATTGTAGTTTGCAAGAAATTAACCGGCTCTTAACGACAAGATCTTTTGGAGAACCAGGCAGTTTGAATGTCACTGCAGAAGGtatatttaaaaa-----cttttattcat---caatcaaaac-----ttt---tttcagcactCGGAAGCAACTTATGTTCTGACACGGAGTTCAATCACTGTCATGTTTACTCAGATTGTGTTCTGGATAGTGAAGAATTGAGATATGCATGTCGTTGTAAGAAAGGAACAACTGACACGTCGGATGGTTATGGTAGACTTTGCGAAGGCTTTCCAGAAGAATCTGAGTAAG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5778923 395 + 20921866 ac---ag-------aaataatttttctttacaGATTGGACAATCATATAGATCATGCATTCGTCCAACAGACCATGGATCTTCTCTTATTGCTACCATTCAGTGTGAAGACTGTAGTTTACAAGAAGTGAACCGTCTTTTGACTACAAGGTCTTTCGGAGAACCAGGAACGTTGAACGTTACAGCTGAAGGTATGTCAAGG-----------AAAgcat---atttgaaaaac---tttt-tgttccAGCTCTCGGAGGAAGTTTATGTTCTGATTCGGACTTTAATCACTGTCATGTTTATGCTGATTGTGTTGAAGACAACGAAGGATTACGATACGCTTGTCGGTGTAAAAAAGGAACTACTGATGTTTCAGATGGTTATGGTAGACGTTGTGAAGGTTTCCCTGAAGAATCAGAGTGAG
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2049879 409 +  4147112 ac---tttcactCCAATTAGTCGTTGTTTCCAGATTGGACAATCTTATCGATCCTGCATTAGGTCTACAGAACATGGATCTTCTTTGATTGCCACCATTCAATGCGAGGAATGCAATTTACATGAAGTACAGAGGTTACTCACAACTAGATCTTTTGGGGAGCCTGGCACTCTAAATGTAACCGCAGAAGGTGAAACTGGGA--------TTAGACCACAGAATGTCAtcaac---ttttctatttcagcTCTTGGGTATGATTTATGTTCTGATACGGAGTTCAATCACTGTCATCTTCATGCTGACTGTAACATTGACAACGACGGTCTACGCTATGCATGCCGTTGTAAGAAAGGAACTACGGATGTTTCAGGAGGATACGGAAGAACTTGTGAAGGTTTTCCTGAAGAATCAGAGTaat
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   89957 403 +   343467 AT---AT-------ATAAAG----AATTTTAAGCTTGGAAACCTGTACACTTCGTGCATCCGTTCAAACACTGATGGTTCGGCACTTATTGCCACTGTTCGTTGTGAAGATTGCACTGTCCAGGACATTAACCGAGTGCTGTCAAGAAGATCATTTGAAGATCCGGGAAGTCTTAATGTGTCTGTTGAAGGTGCCTATTTATTCTGCCTCGTAAATCAA---Gttttaaactttaatttt---ttccagctCTTGGAAGCGAGTTGTGCTCTGACACTGACTACAATCACTGCCACGTGTACTCCGACTGCAAGATCGACAAAGAAGGtcttcgatatttttgtcggTGTAAACAAGGAACTACTGACACTTCGGATGGATTTGGCCGGTATTGTGAAGGGTTTCCAGAAGAGTCAGAGTGAG
i caeJap4.Scaffold18142 I 447 C 0

a score=-6740.000000
s ce10.chrX             3662694 34 + 17718866 ----------------------AAAACGTGTTACATGCAAAATAATATGTATCA--AT
s caeRem4.Crem_Contig0   779453 27 -  4500979 ----------------------AAATATTACT---------GTAATAagcaaaataat
i caeRem4.Crem_Contig0  I 4 I 5
s caeSp111.Scaffold630  5779321 29 + 20921866 ----------------------AAATCATCTCAT-------ATACTCAGAAacccgat
i caeSp111.Scaffold630  I 3 I 5
s caePb3.Scfld02_0      2050291 26 +  4147112 ----------------------atatttttttg--------gtgatatcaaacc--at
i caePb3.Scfld02_0      I 3 I 8
s caeJap4.Scaffold18142   90360 50 +   343467 TTGACAAATTAAgttataaataaaatttttttt--------gttatatttcatttaat
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8793221 33 + 21540570 I

a score=688919.000000
s ce10.chrX             3662728 1220 + 17718866  
s cb4.chrX              8793254 1211 + 21540570  
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   779485 1186 -  4500979  
i caeRem4.Crem_Contig0  I 5 I 75
s caeSp111.Scaffold630  5779355 1227 + 20921866  
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      2050325 1207 +  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18142   90410 1200 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=1337.000000
s ce10.chrX             3663948 3 + 17718866 GAG
s cb4.chrX              8794465 3 + 21540570 TAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5780582 3 + 20921866 AAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2051532 3 +  4147112 TAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   91610 3 +   343467 GAG
i caeJap4.Scaffold18142 C 0 I 143
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=180.000000
s ce10.chrX             3663951 1 + 17718866 T
s cb4.chrX              8794468 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5780585 1 + 20921866 C
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2051535 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 224
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=-820.000000
s ce10.chrX             3663952 1 + 17718866 G-
s cb4.chrX              8794469 1 + 21540570 -T
i cb4.chrX              C 0 I 57
s caeSp111.Scaffold630  5780589 1 + 20921866 G-
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_0      2051536 224 +  4147112 I
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=466.000000
s ce10.chrX             3663953 32 + 17718866 CTATGAACGTGAC----TTTTAGAAGCGTTCCTAGT
s caeSp111.Scaffold630  5780590 36 + 20921866 TTCCAAATttagaattgtttttgaagcgTTCAAAGT
i caeSp111.Scaffold630  C 0 I 1
e caePb3.Scfld02_0      2051536 224 +  4147112 I
e caeJap4.Scaffold18142   91613 143 +   343467 I
e cb4.chrX              8794470 57 + 21540570 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=0.000000
s ce10.chrX             3663985 51 + 17718866 AGTAAAAATTTGAAAATTCAGTGTATAGGATCGCGCCAAAATTAATGAAAG
e caePb3.Scfld02_0      2051536 224 +  4147112 I
e caeJap4.Scaffold18142   91613 143 +   343467 I
e cb4.chrX              8794470 57 + 21540570 I
e caeSp111.Scaffold630  5780626  1 + 20921866 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=-1140.000000
s ce10.chrX             3664036 558 + 17718866  
s cb4.chrX              8794527 476 + 21540570  
i cb4.chrX              I 57 C 0
e caePb3.Scfld02_0      2051536 224 +  4147112 I
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeSp111.Scaffold630  5780626   1 + 20921866 I
e caeRem4.Crem_Contig0   780671  75 -  4500979 I

a score=-1125.000000
s ce10.chrX             3664594 19 + 17718866 CGTACTCCACCTTTAAAAA--------
s cb4.chrX              8795003 19 + 21540570 -------cgt-tctaaaattttcacaa
i cb4.chrX              C 0 I 32
s caePb3.Scfld02_0      2051760 19 +  4147112 CATATTCTGTACCTAAGAT--------
i caePb3.Scfld02_0      I 224 C 0
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeSp111.Scaffold630  5780626  1 + 20921866 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=383.000000
s ce10.chrX             3664613 16 + 17718866 AATTCAATAATAGTTA
s caePb3.Scfld02_0      2051779 16 +  4147112 ATTTTAATCACTGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91613 143 +   343467 I
e cb4.chrX              8795022 32 + 21540570 I
e caeSp111.Scaffold630  5780626  1 + 20921866 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=-1978.000000
s ce10.chrX             3664629 61 + 17718866 -TTCATCAGAGCTTATCTCCGGAAAAAATGAGAC-TGCTCCGCTGACCGAAATTTTCT---TTTAA-
s cb4.chrX              8795054 60 + 21540570 -ttcat-aaaatctgTATTCAAAAGGTATTGGAGTTGTTTCGTG--AGAAGAATATCG---TTTAAA
i cb4.chrX              I 32 C 0
s caePb3.Scfld02_0      2051795 56 +  4147112 TTTCAA-AGAACTGG-------AGAGTTTGACACTTGTTCAGCt--ctgattttatcaaattttga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeSp111.Scaffold630  5780626  1 + 20921866 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=168.000000
s ce10.chrX             3664690 32 + 17718866 ---AACAATATTA----CTTGTTCAGAAAACCAACCCTT---
s cb4.chrX              8795114 39 + 21540570 ---AACCTATTCAATTCATTTTACAGTGAACCACCACCGACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5780627 32 + 20921866 AACAACTGCATTG-------TTACAGAAAACCAGCGCCT---
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2051851 34 +  4147112 agtaattttttcg-----tttttcaggaAACCTCCTCCA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91613 143 +   343467 I
e caeRem4.Crem_Contig0   780671 75 -  4500979 I

a score=7752.000000
s ce10.chrX             3664722 82 + 17718866 GTCTCTGAAGAAACAAAGAAAACTCCTGATAACGCCGAAGTAAATCTGGAAAAACCTTCCGATACCACACAGGATATAAAAC
s cb4.chrX              8795153 82 + 21540570 GTTTCAAAGGAAGGGAAGACATTACCTAATCCTTCGGAAACCAAAGAAGAGAAAGCAGCCGCTGTTGCAGAGCAGATCGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   780746 82 -  4500979 GtttctgaagaaaagaaaacaccgCCAGTTGTAATTGATACCACCACTGAGAAACTAACGGAAAGTGTGGAGGACATTCAAA
i caeRem4.Crem_Contig0  I 75 C 0
s caeSp111.Scaffold630  5780659 79 + 20921866 ACACCTGAAGTCACTGAAAC---TCCTGTTGTGACTGacattaaatttgaaaaaccagTCGATGTTGTGGAAGAGATCCAGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2051885 73 +  4147112 ATTTCTGA---CATAAAAGA---GCCTGttattgttgaaaaagttCCCGAGAAACC---TGATGATGTAGAGGATATTAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91613 143 +   343467 I

a score=677383.000000
s ce10.chrX             3664804 1210 + 17718866  
s cb4.chrX              8795235 1232 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   780828 1209 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5780738 1194 + 20921866  
i caeSp111.Scaffold630  C 0 I 15
s caePb3.Scfld02_0      2051958 1205 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   91756 1223 +   343467  
i caeJap4.Scaffold18142 I 143 C 0

a score=-7808.000000
s ce10.chrX             3666014 27 + 17718866 ATGTTTATTTTTCTCCAACTTGTTAAA
s cb4.chrX              8796467 21 + 21540570 ----CCAATAGTTTTTAgctgctca--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   782037 19 -  4500979 --------tttttctttcgtgatgaac
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2053163 25 +  4147112 --GCTGAAATCATCCTGGATAAATAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   92979 12 +   343467 ----ttatttaatttt-----------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5781932 15 + 20921866 I

a score=376549.000000
s ce10.chrX             3666041 1074 + 17718866  
s cb4.chrX              8796489  990 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   782059 1080 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5781947  978 + 20921866  
i caeSp111.Scaffold630  I 15 C 0
s caePb3.Scfld02_0      2053188 1068 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   92991 1150 +   343467  
i caeJap4.Scaffold18142 C 0 I 282

a score=-3814.000000
s ce10.chrX             3667115 192 + 17718866 TCCTGAAGCAACCCTAAAAGAACTTTGATTA--------------------AAATCAGAGGACCTCCATGATTT----CATCCAAAATGGGCGAGCAAAAGGG---AAATAAGATTTGTTGATGGCTACTGGTCCA-----C----------------------------GTACGAAAAAAA---CAAGATTCCAGTGAAA---TTTCTCCAATCAAG-------TTTAATGAAAAATCTGA-AGGAACTGAAGCATTTGTATCTG
s cb4.chrX              8797479 193 + 21540570 ttctaa----------aaag---tgttttta--------------------aa-------aattttcaggatttttgacCTCCATGACGATATAGTTTGGGCCCTAACGTTTGGT---GTGGTGATCAATGTCCGTGGTGAGGGTTGTT---------------------TTTCGAAGAAGCTTTCTTGAATTCGATGGGaa--at------gaaaatctagaaacttAATGAAAATCCTCT-TTcagatgaaatttttgtttgtg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783139 160 -  4500979 TTCTAA----------GAAAGACTATTTTTC--------------------AA--TGCG-GACCTCCATGATTT----CATTTACGACAATCTGG-----------ATGTAAGGT-------TGATCGACGGcctt-----ttgttgtt---------------------ttctagAAATGC---CTTGGTTTTGATGAAAAGGGT------GTTAGT-------CTTAATGAAAAATCTCC-C--------AAGTTTTGTTTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5782925 158 + 20921866 CCctca---------------------------------------------aa--tgaaaaaccaCCATGATTT----CATTTACAATTCAACAA-----------GTATTGGCTTTGTTGATGGTCAATGGTgct-----caattgttttct-----------------ttccgaaGGTGT--TACTTTTCTTAATGAGA---GT------TTCAGA-------TTTAATGAAATATTCCA-T-----TGAGGTTTATGTTTGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2054256 218 +  4147112 CCCTCA----------AAAGTTTTATGTTTTACTtcattccagatttttctaa--tagGTGACCTCCATGATTT----CATTTACAATTCAATAACGCAGGC----AAACAAGGATTGTTGACGGTCGATGGTCCt-----cagttgttttctttcttgagAGAGCATGATTCCGaggaaaa--tccaatttctaATGATG---CT------GTCAGT-------CTTAATGAAAAATCTCAGc-----tgaagtttttgtttgtg
i caePb3.Scfld02_0      C 0 I 261
e caeJap4.Scaffold18142   94141 282 +   343467 I

a score=-2250.000000
s ce10.chrX             3667307 23 + 17718866 --TTTGTGCTGGTTGGTCCTATCCA
s cb4.chrX              8797672  5 + 21540570 TGCCA--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783299 23 -  4500979 T--CAATGATAGTTTATGGTACCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5783083 23 + 20921866 --CCGATGCTAGTTTATGGTACCTA
i caeSp111.Scaffold630  C 0 I 213
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I

a score=325.000000
s ce10.chrX             3667330 21 + 17718866 --AACAGGTCGAGCGAAGATCGG
s cb4.chrX              8797677 17 + 21540570 --CGCAAGCCGA---GAAATCG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783322 23 -  4500979 ACCACATGTTGAATTAAAATCAG
i caeRem4.Crem_Contig0  C 0 I 78
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I

a score=-2413.000000
s ce10.chrX             3667351 490 + 17718866  
s cb4.chrX              8797694 404 + 21540570  
i cb4.chrX              C 0 I 18
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I
e caeRem4.Crem_Contig0   783345  78 -  4500979 I

a score=0.000000
s ce10.chrX             3667841 27 + 17718866 ATAAAACTTTTCCGTAGATTCCGCCTG
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I
e cb4.chrX              8798098 18 + 21540570 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I
e caeRem4.Crem_Contig0   783345 78 -  4500979 I

a score=-57.000000
s ce10.chrX             3667868 77 + 17718866 AAAATTTTAAACCACTCT------TGCTTTAGCTCATATCGTACACTTGGTAAGAACCAAATGTTGTACGAAC---CTGAAA--ATT--T
s cb4.chrX              8798116 88 + 21540570 gaaattttacacatttccaACCGGTACCCTAACCTAGAACGAATA--TGATACaaatctcaaatttggagaactAGCTGAAACGATTCCT
i cb4.chrX              I 18 C 0
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I
e caeRem4.Crem_Contig0   783345 78 -  4500979 I

a score=-4387.000000
s ce10.chrX             3667945 127 + 17718866 ATAAATTTTCAGCTGCTCTCCTTGACATC--ACACAAATTTCCATTAACGTTTTCTTAACGTTCCTGGGCATA--TTTATTTGTGA-TTTGATTC---TGATT---CCAAATTTTTTCA--AATTTCATCTCA----AAGTCTC
s cb4.chrX              8798204 124 + 21540570 -------ATAAAAT-TCTGAccaaacaataaaaatgaattcCAGTT------CTCATGAGACTTCTGGCTTTG-----TTTCGAGC-CATGATTCCAATTATtgacttgatttttttaatcgatAATGTTTCCTTTAAAAACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783423 116 -  4500979 ATTAGTTATCAGCTGTTCGTCTCGTCATT---------TCCCTGTTA-----CCCATTCTATTTTCGCCCTTAGCTTTTTCCGTGTGTATAGTCCCCCTCATT---CTGAGTTTAATAA--AATACCG---------AAgactt
i caeRem4.Crem_Contig0  I 78 C 0
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeJap4.Scaffold18142   94141 282 +   343467 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I

a score=-1489.000000
s ce10.chrX             3668072 20 + 17718866 TTAGGCAATTGA-AAGTTCAT
s cb4.chrX              8798328 10 + 21540570 TTAG----TTGA-------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783539  8 -  4500979 tt------ttgt-------at
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142   94423 21 +   343467 TTAAACAACTGATTAGTATAT
i caeJap4.Scaffold18142 I 282 C 0
e caePb3.Scfld02_0      2054474 261 +  4147112 I
e caeSp111.Scaffold630  5783106 213 + 20921866 I

a score=387017.000000
s ce10.chrX             3668092 883 + 17718866  
s cb4.chrX              8798338 890 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   783547 860 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5783319 868 + 20921866  
i caeSp111.Scaffold630  I 213 C 0
s caePb3.Scfld02_0      2054735 888 +  4147112  
i caePb3.Scfld02_0      I 261 C 0
s caeJap4.Scaffold18142   94444 920 +   343467  
i caeJap4.Scaffold18142 C 0 I 407

a score=-5610.000000
s ce10.chrX             3668975 129 + 17718866 GATTT----------TGCTCGGGCTCCGCCTCTTCTGCATTTTCTCCAATGACCTCAACAATACTTTCTCAGCGAGATTAGATTTAACAACGCGAGGAAAAATTATTCAAGTGCA------CTGAAGTGATATTGTTTTCGAGAA
s cb4.chrX              8799228 113 + 21540570 CACAC--------ACGTAtaaagctccgcc-----cacaactGCTTCTCTGTGAGA-----------TGTCGAGATTCCGAGAGGGGAA--GAGAAATAAATCTAGTGGAGTGCA------TTGAAGTGAtattgtttttgagaa
i cb4.chrX              C 0 I 1728
s caeRem4.Crem_Contig0   784407  61 -  4500979 c----------------------CTTCG---------CAGCTG----------------------------------------------------AACAACTCAAGCGCCGCCCACTTTCTCTGTAGTGACCTAGATGGCGAGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5784187 119 + 20921866 CTCTCTCTGCCGAGCAACTcaaactccgcc-------cattttctgTAGTGACAGA-----------GAAGGCAAGATTGTCTCTAACA--GAATAATAAAACTAGTCAAGTGCA------TTGAAGTGATATTGTTTATGAGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2055623 117 +  4147112 CTTTCTTAGTTGAACCgctcagactccgcc-------cattttctgtAGTGAACTA-----------CTGCGAAAGATTGAGAGTAACT--GAATAATAAGTCTATCGGAGTGCA------TCGAAGTGatatattt--cgagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95364 407 +   343467 I

a score=-10152.000000
s ce10.chrX             3669104 111 + 17718866 ACAGGAATCT----GATGACATGTTTCGTTTTGAGAAAAGTTAAAAAAAGTAATATGTGCACGGAAATTGTACAAAAATAGAAATGTGTCATGTGTCTAAAAAAGTTAATTCGAA
s caeRem4.Crem_Contig0   784468  34 -  4500979 ------------------------------------------------------TTATACGCAaacagaataagaaaaatt---------------------------attcgag
i caeRem4.Crem_Contig0  C 0 I 88
s caeSp111.Scaffold630  5784306  45 + 20921866 ----GAATCT----GATGATGCCA------------------------------TAGTGGaaaaaaaGTATactagaaatt--------------------------------aa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2055740  79 +  4147112 ----aaatctttACGATGATGACATT---------------------AAGTCACTAGGATAGGGAAACTAACGTAAAAGTTACATGTGAcaaatgat-----------attcaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95364 407 +   343467 I
e cb4.chrX              8799341 1728 + 21540570 I

a score=-4406.000000
s ce10.chrX             3669215 81 + 17718866 AAAAAATTATCTCAATTTTTGCTACTTTTTTTGGAAGTCGCGGATCAAAAAATACTAATTTCAAACTATATAGTACTCATG
s caeSp111.Scaffold630  5784351 14 + 20921866 aaaaggt--------------------------------aCACATG-----------------------------------
i caeSp111.Scaffold630  C 0 I 22
s caePb3.Scfld02_0      2055819 32 +  4147112 aatagat--------------------------------gcacgtca------------ttcaaaatttatcgTAC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95364 407 +   343467 I
e cb4.chrX              8799341 1728 + 21540570 I
e caeRem4.Crem_Contig0   784502 88 -  4500979 I

a score=-988.000000
s ce10.chrX             3669296 36 + 17718866 CTTTGACTAACAATACTTCAACATAGTAAGGATCCG
s caePb3.Scfld02_0      2055851  9 +  4147112 -------------------------GATCGGATC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95364 407 +   343467 I
e cb4.chrX              8799341 1728 + 21540570 I
e caeSp111.Scaffold630  5784365 22 + 20921866 I
e caeRem4.Crem_Contig0   784502 88 -  4500979 I

a score=0.000000
s ce10.chrX             3669332 26 + 17718866 CACATGCGACAATGCTGCAGTTTTTC
e caePb3.Scfld02_0      2055860  0 +  4147112 C
e caeJap4.Scaffold18142   95364 407 +   343467 I
e cb4.chrX              8799341 1728 + 21540570 I
e caeSp111.Scaffold630  5784365 22 + 20921866 I
e caeRem4.Crem_Contig0   784502 88 -  4500979 I

a score=-40193.000000
s ce10.chrX             3669358 532 + 17718866  
s caeRem4.Crem_Contig0   784590 338 -  4500979  
i caeRem4.Crem_Contig0  I 88 C 0
s caeSp111.Scaffold630  5784387 285 + 20921866  
i caeSp111.Scaffold630  I 22 C 0
s caePb3.Scfld02_0      2055860 296 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95364 407 +   343467 I
e cb4.chrX              8799341 1728 + 21540570 I

a score=17715.000000
s ce10.chrX             3669890 183 + 17718866 AAGAAACAGAATTTGAAATTCTG-TTTCAAGAAGTTCACATCATTT----------ATAATAT-TGTGGTTTGTATATCAC-------------------------TTTTGT-------------ATGTGCATGG---AAAACTGCTACTTTTTATTAATTAGAGTAAGAGTTTGAGAAGAATA----GTGGCGCTACTAAATTCATATA------------ACTTTTTTTTTTCATTAAGCACACGA-GGG-C
s caeRem4.Crem_Contig0   784928 205 -  4500979 AATCAAAGGAATTTTagatttat-tttcaagaa--------CATTTGCCCTGAACAAAGACAT-TGTGCTTTGTTCAACAT--------------------------CATAC--TTTTCCCATACACGTGAATAC---GAAAGTTTTACTCCGTATTAATTAAACTGAAAGTATGAGAATGGGA----AAAG--TTAATTAATTCATTCAGCAACGTTTTgcatctccttttttcttcgagCACATGG-CGGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5784672 196 + 20921866 aagaaagagaatttcagattgat-tTCCAAGAA--------CATTTGCCCTACACAATGACATGTGTGCTttgttcttcat----------------------tcttcttat-------------ATGTGCatacagaaaaagttttccc--GTATTAATTAAACTGAAAG---GAGGAGCAAGATGAAAAG------tcaattcattcaaagaCCTTttgcatcttttttcttttctcaacaTATGA-GGG--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2056156 223 +  4147112 aagaaagagaatttcagattaaT-TCTCAAGAA--------CATTTGCCCTAAACAATGACAT-CGTGCTTTGTTCTTCCTATGTATTTCTTCGGAAACCCCATCTTCATATTGTTTTCTCAAACACGTGCATAC---GAAACTTTTACCATGTATTAATTAAGATGAAAG---GAGCATGGAG----AAAG------ttaattcattcaaaaacgttttgcatcttcttttttctt---acacATGAGGGG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   95771 183 +   343467 AAAATacagatttttttcttcatgttGCAACAA--------GTTATTCACCGAACCA-------TGTGATTTATATACGTA----------------------TTTCCATGT--------------TATTTTCAG---TAACTTTTCACTTTGTGTTGATTAAACGGacgg---aaggaaaaaa----aatgtggggATGAGAGAATGGA---AGATTTTGC-TCTTCAATCTTTTC---ACACAAGA-GGT--
i caeJap4.Scaffold18142 I 407 C 0
e cb4.chrX              8799341 1728 + 21540570 I

a score=43009.000000
s ce10.chrX             3670073 63 + 17718866 CTCTAATGCGATAATACGCATTGTGCCC-GAGGTCAAACA-------------------TGTTGCA-AGGGCTGCATTTTTAAT
s cb4.chrX              8801069 81 + 21540570 CTCTTATGGGATAATACTTATTGTGCCT-GAGGTCAACTATTGTGGATTTTGCATAGAGTTTTGCAAAATGCTGCATTTTTC--
i cb4.chrX              I 1728 C 0
s caeRem4.Crem_Contig0   785133 69 -  4500979 -TCTAATGCGATAATGCTCATTGTGCCT-GAGGTCAAACATGGTGCAT-----------TTTTGCACAGagttgcatttttt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5784868 72 + 20921866 CTTTAATGCGATAATATGTATTGTGCCT-GAGGTCAAACAAACAAAAC-----------TCTTGCACGAAGttgcattttttat
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      2056379 73 +  4147112 CTCTAATGCGATAATGCCCATTGTGCCTGGGGGTCAAACATGATGCAG-----------GTTTGCAAAGAGTTGCATTTTTTAT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   95954 57 +   343467 CTCTCATGCGATAATACTTATTGTGCCT-GAGGTCAAACA-------------------TGGTGCA-------GAAttttttat
i caeJap4.Scaffold18142 C 0 C 0

a score=-13801.000000
s ce10.chrX             3670136 33 + 17718866 TGGAAATTGCAGTT----------TTTGAAGATTC-----GCATCCAG--
s cb4.chrX              8801150 27 + 21540570 -----ATCAcgtttct--------ttcaaaaatcctcaTA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   785202 26 -  4500979 ---aaatcagataTGC------AGTTATAAAATCC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2056458 17 +  4147112 -------------TGCA-----AATTCCAGATTTC---------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142   96011 31 +   343467 ------ctgcttttgcattttttttctgcacatCC-------------CA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5784940 23 + 20921866 I

a score=91642.000000
s ce10.chrX             3670169 325 + 17718866 --------AACTTCC-GGCATGTTCT----------------TTTTCAAACTACGGTCA------------------AAAGTTGCTGG------CGCGTGCATGTCAGAATGGAATCAGATTAGGT-----------------------------TTTATGATTG----------------------------------------------TGTATTAACTTAATTTCCGATGCTTCTAG------AGTGTCTGAATAGCCTAAGGCAAGGTGTCTTCTTATGATG-ACCCTTTGACGCATTTCCAATAATTATGACTAGATAC--TTTTTCAGAGAAA-----TTCATTCGATCGCAAAT--------ATACATTACAAGAACAGGGT-----TACAGAAAGATGA---------ATTATTGGCAACAATAAGCAGTCCATTTTCCCTGTACGCATGTCGATTTCTCGGGACAGAAACTGAAAA
s cb4.chrX              8801177 324 + 21540570 --------AACTTCCGGGAATGTTCT-----------------TTCCATACATCGGTCA------------------AAAGTC-TTGG------TACATGTGTAT----------TGAGATTAGGG-------------------------------CACTATAAGTGA--GAATAAA---------CCTC----------------CGAGCGTAATAACTCAATTacagaagcttctagaa--aaaGCGTCTGGATTGCCTCAGGCTAGATGTCTACTTATGAGACACACTTTGACGCATTTCTTGTA------ACTTGAC----TTTTCTagaatcatttattttttatatacACATAT---------TATATGGGGAGTTGAGAAT----------AAGAAG------------TTATTGGCAGCAATGTGCAGTCCATTTTCCTTGGATACAAGTTGAACCAGCTGgacagaatctgaaaa
i cb4.chrX              C 0 I 154
s caeRem4.Crem_Contig0   785228 344 -  4500979 --------AACTTCC-GGAATATACT----------------------AACAACGGTCA------------------AAAGTTGTTGG------CGCGTGCATGTCAAGACGGAATCAGATTAAGGT---------------------------TTTTATGACTAGAGA--AAATAAAACCTACATGCCTT----------------CAACCA-AATAACTCAATTACGGAAGCTTCTAGAACTCAAGTGTCTGAATAGCCGCAGGCCAAATGTCTTTTTATG----ACACTTTGCCGCATTTCTTGTAATTCTTACTTGAC---ACTTTCTCGAAACA-----TTTTATTGAACACATAT---------ACTACAGAaagggaaaact----------gaaaagct---------TTTACTGACAGCAGTGAGCAGTCCATTTGCCTTGGATACATGTAGAACCAGTTGGGCAAAACCTGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5784963 344 + 20921866 --------AACTTCC-GGAATGTTGT----------------------AACAACGGTCA------------------AAAGTTACTGG------CGCGTGCATGTCAGGAAGGAATTGGATTAGGG-----------------------------TTTATGAGTA-------AAGAAAACCTACATGATTT-----------------GTGCGTAATAACCAAATTACTGAAGCTTCTAGAACCCAAGTGTCTGTATAGCCGCAGGCGACGCATCTT---ATG----ATAttttgacgcatttctcA-GATCCTGTCTTAAAACTAACTCTCGGAAACA-----CTTCATTGGAAACAAAT--------ATACATTACAATACAAGGGT---TTGAGGGAAATCACT---------CTCATTCACAGCAATGTGCAgtccatttcttttgaacaCATGTTGAACCTGATGgacaaaatctgaaaa
i caeSp111.Scaffold630  I 23 C 0
s caePb3.Scfld02_0      2056475 356 +  4147112 --------AACTTCC-GGAATGTTCT----------------------AACAACGGTCA------------------AAAGTTACTTA------TGCGTGCATGTCATGTAAGAATTAGATTAGAG----------------------------TTTTATGACTA-------AAGTAAACCTACATGTCTTCAACTCCTACATGTCTCCTGCGTAATAACCCAATCAAAAAAGCTTCTAGAAACCAAGTGTCTAAATAGCCTAAGGCTAGGTATCTT-----------CATTTTGACGCATTTCTTGTAACTCAGACTCGACTCTTTTCTTTAGAAACG-----TTTTATTGAACAGATAT--------ATACATTTAAAGAAAAGGGT------ATAGTAAGAACT---------TTTACTGACAGCAATGGGCAGTCCATTTTCCTTGAACACAAGTTGAACCAGATGgacagaatctgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   96042 457 +   343467 ACAAAACATACTTCC-GGagatttgttcaaaaaaaaactttgtttgCAAATGACGTGGATGACGTTGGATTTGAAATAAGGTTGTTGATGTTGCTGTGCGCGTGTCAAGAAGAATCGGGACTGGACTGGACGGGATGGGACGGGACGCAatcaaatttaaaagaaatgaCTCGCGACAACCTACATGACTT-------------------GGGTAATAACCATATTACGGAAGCTTCTAGACACCGTGTGCACATAACGCCGCGGGCGATGTGTATTCTGATT----ACA-GTTGACGGATTG--TGTTATGAGAGCTTGGTTGTAATAAACAAAAGTAAAGA-TTTTATTGAACACGTACAAACATACATATTTACACAGAGCAGATCTTTTTTATTAAAAGGGTTCCGAGATTGTTTACACACAGCAATGCGCCGTCCATTTTTGCTGAATGCATCGTGAACCAGTTGGGCAGAAGCTGGAAG
i caeJap4.Scaffold18142 C 0 C 0

a score=32244.000000
s ce10.chrX             3670494 296 + 17718866 ATCCAAAGATCA-----------------------------GAACAGTGTCATTTAAAATA-------------------------TTTGTGCAAATCACAAATGAA----------------------------------------------ATGCTAATTTTAA--------------------------------------------AGGCTAGGTATCTGAAATATTTTTCACCTGTTCCGAAGTACT-----------ACTTACTTATGCGAACAACTACGTCCAATAAGAGGCGTCATTCCAAACCATTGCTTGAATTGGACAACTTGACCTTTCAAACACTTTGGTGAATTCTCCTTGTTCCATTCGTCTGAAAGTTCGACCA----AGTGGAAA-GCGATG---GGTAGACT------TATTTATAGCG---TGAAATTGTCTCGTTTGAAAATTT----ATTT
s cb4.chrX              8801655 396 + 21540570 ACTACAATATAAAGCTACTTTGAAAATGGTATTTTGTTTATGAACGATGTTACAAACCAGAAACCTTTTGAATTACGTGGTCACAGTTTT-AAGAATTGTAAATTCGTTAATAGACGAGATACAGTGTTTCAAACAAagtcattttgtagtactagTCGAGTTCTATCCTATCTAATGCAGTTAATGCGAAATTATCggctccagaaaaaaaacta--tatatAAAACTTTTTGGGCCTGTTTTCAATTGTG-----TTAATTACTAACTTATGTGCACAGTTCCTGCCTATCAACGGAGTCATTCCAAACCATTGCTTGAATTGGACTACACTTCCCTTGGAGCACGTTGGCGAGTGCTCTTTGTTCCATTCATCTGAAA-AGTGGCGA----TGTGGA-------------------------------------------------------AAATACATT--------
i cb4.chrX              I 154 C 0
s caeRem4.Crem_Contig0   785572 249 -  4500979 -----------------------------------------GAGGGAAATGACGAATGAGA-------------------------TTTG-AAgaa---taaatttg-----------------------------------------------atttgatttcaa-----------------------------------------------------------------------CTGGTTTCAATTAAT-----CAAA--ACTAACTTATGATTACAGTTCCGTCCAATTAATGGAGTCATTCCAAACCATTGCTTGAATTGTACAACATTCCCCTGTGAGCACTTCGGAGAGTGCTCTTTGTTCCATTCGTCTGAAA-TGTGATCA----AGTGGAAATATGATG---GGCAGACTAT--TTTATTTGAAgcg---tgaaat-------tgaaaaagttt--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5785307 252 + 20921866 ataaggaaatggaa---------------------------gaatatCATGACGAATGATA-------------------------TCTG---GAATTgcaaatgaa---------------------------------------------------atattcag-----------------------------------------------------------------------CTGTTTTCGA----------------ACTCACTTGTGAGAACAGTTCCGCCCAATCAAAGGAGTCATTCCAAACCATTGCTTGAATTGTACAATTTTTCCTTTGAGACACTGTGGAGTGTGTTCTTTGTTCCATTCGTCTGAAA-TGAGATCA----AGTGGAAACAATATG---GGTAGACTAT-----TCTCGAAGCG---TGAAAT-------ttctaaagttttttt----
i caeSp111.Scaffold630  C 0 I 90
s caePb3.Scfld02_0      2056831 249 +  4147112 acaaggaaattaA--------------------------------GCCATGACGAATGACG-------------------------T---------TTGAAAATCAg--------------------------------------------tctctttgttttcag-----------------------------------------------------------------------ctgTTATCAAT---------ATCATTACTAACTTGTGAGAACAGTTCCGTCCAATCAAAGGAGTCATTCCAAACCATTGCTTGAATTGTACAACTTTTCCTTTCTGACACTGTGGGGAATGTTCTTTGTTCCATTCGTCTGAAA-TGAGTTCA----AGTGGAAACAATAAG---AGTAGACTAT----AACATGAAGCg---tgaaat-------ttctgaag-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   96499 251 +   343467 ---------------------------------------GAAGGTAGAGTTAAAAAAGAAA-------------------------tccg----------attttta---------------------------------------------------aatttcag-----------------------------------------------------------------------ctGTTCTTGTTAAGTAAATTCTAAAAACGTACTTATGAGAGCAATTGCGACCAATCAAAGGAGTTTTTCCGAACCATTGCTCAATCTGTGCAACACTTCCACTTTGACATTTTGGCGAATGCTCCTCATTCCACTGATCTGGAA-TAATACGACTAGAGTATAAAAGAAATGTATAGTAGGCTAAGATGGAATTGATGCGTAATGAAAT-------TT-----------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-22098.000000
s ce10.chrX             3670790 111 + 17718866 TTACACTTCTTTTCTAATTTATTAG------TACAAAATTGACGTTAAAGTGCCTAT-TCCTGGAAG---GAAAATTAACTTTACTATAGGAATGTGCAACATGTTTCCCTAGTTGGGAAA
s cb4.chrX              8802051  57 + 21540570 -----------------CTGATGAG------TACTAGAC-------------ACTAT-CTATGCGAAgcgtgaaattttttgaaaaaaaagagt---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   785821  57 -  4500979 -----------------tttttgag------tatattGT-------------CCGATGCCGTGAGAAAT-TGAAAGTACTTCAACTATAGTGAT---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2057080  59 +  4147112 -------ttttttttagtttttgag------t-tttcgt-------------ccgatgttttgaaatag-aaaacatGCGTTACGAA----------------------------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   96750  63 +   343467 -----------TAATAGTTTATCAGGTGGCATGTATAGT--------------CGGTACATTGACGCAT-GCAGCATGCtcttcgtgtt--------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5785559  90 + 20921866 I

a score=10942.000000
s ce10.chrX             3670901 438 + 17718866 ATTAAAATTTTCCAAATATTCAAAAAGCGTTG------AAACAATTTTTTGCTCACAGTCAGAGCAATAAATTTCACAG--CAACTATGTTCATAAACCAAATAATCAAAACGACAAGTTTGAAAGATTCAACTCGTTTACCGGTTGTTTTTTTCTAGGTTCGGCTTT--------------GGCAGGTGTGGAAATGTTTTTGTTTTTTGGA------ATATTGGCA-AAGTCTACTTTAAATTACATTAAACAATATTATTTTAATTCTCAAAAATTCTATGT-----ATACCTTGAATTTTCTTATCACAGCAGAATCCAACCATTCCTCCCATCACACACACCGTTCCTTTTTTGCATCCTTGATCTCCGTGAGCGAAGCAGACACCATCAGGGCCAGTATTGCCGCCGCATGAAAATTGGTCAGCTGTAATTAGAAATGTAATGATGTACTAAAATTAGAATTCAGA
s cb4.chrX              8802108 345 + 21540570 ------------------ttttagACTCGAGA------AAAC---TGGTGATGTACTACTCGTGC---TGACAACGCAT--CAACT---------------ATACATATTGCACA----TCATGGAATTT-----AGCTCTCGCTTCGATTCACTTTACCGA---------------------GAAAGATTGGGCAAATAGCAAAATTACGAA------ATCAGGGTA-AAG----------------------AGCACTGTT---ACTTCCGGG-----TCCAC-----ATACCTTGTGTAGCCTTATTGCAGCAGAATCCGATATTCCCTCCCATCACACAATCCGTCCCTTTTTTACATCCACTGTCACTTGGAGAAAAGCATATACCATCAGCGTCAGTGTTTCCACCGCACGAAAATTggtcggctgaaa-----atttta---tttttctaattttagacTCTAGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   785878 341 -  4500979 -----------------------GACGCGCGG------AAA------ATGAAATACATCTGCATC---AGGTTTTGCAT--GGATTCACTTC-TTTCTAGAATAATCAGAGCaggaagtttttggaaatctaATGAGTAATCACTGTTGCAGATactactgaaaattt--------------cttccgGTTATCCAACCAATAACTTTATGGGTGGTTTGTCCCCGTA-C------------------------AGCATTAT------------------TTCAC-----GTACCTTGAATTTCCTTGTTACAACAGAATCCAACAGTTCCTCCCATCACGCAGTCTGTCCCTTTCTTGCATCCGTGATCACCTGGAGAAAAGCAGACACCGTCGGCGTCAGTGTTTCCACCGCACGAAAATTGGtcggctgaaa-------------------ttgaattta---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5785649 294 + 20921866 ------------------------attcatttttctagaat------attgGTTAGGT------------------AAT--GAAAT---------------------------------CTTAGAAACTT-----------CGTCAGaacagttttga---aatgttt--------------agTGTGGGTGGGGAAGCTTTCTAA-TGTGAT------GTCATAACACA------------------------AATAGTGG------------------GTATC-----ATACCTTGAATTGCTTTGTTACAACAGAATCCAACTGTTCCACCCATCACACAATCTGTTCCTTTTTTACATCCTTGATCTCCTGGAGAAAAGCAGACACCATCAGCGTCAGTGTTTCCACCGCAAGAAAATTGGTCGGCTGAAATT--GAGTTTC---TCGTTCTAAATATAG--------
i caeSp111.Scaffold630  I 90 C 0
s caePb3.Scfld02_0      2057141 277 +  4147112 ------------------------ACGCAGTT------AAT------ATAGTGTACAT------------------CACCAGAAAT--------------------------------------GAAATT-----------CGGTTGAACTGTTCTCATCGAATACTT-CCTTCACAGAGGAAGTGAATTTGGGAAACCAATC----------------ATCATGATA-A------------------------GAT----------------------------------TACCTTGAATAGCCTTGTTGCAACAGAATCCAATAGTTCCTCCCATCACACAATCAGTTCCTTTCTTACAACTTTGGTCTCCTGGAGAAAAGCAGACGCCGTCAGCGTCAGTGTTTCCTCCACACGAAAATTGGTCggctgaaatt--gaat------tcattctaTATTTAG--------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   96813 249 +   343467 ------------------------------------------------------------------------------------------------------------------------------------------------tttttttttttttttgcaaaatttatttttacccG---GGTGCATTCAAGAACTCCTATTCATTGTAAATA----TTCTATATG-A------------------------AGTATGAC------------------GTAGCCGATAATACCTTGAATAATCTTGTCACAACAGAATCCCACAGTTCCTCCCATAACACACGTTGCTCCTTTTTTACAACTCTGATCCAGGGGCGAAAAGCAAACACCGTCGGCGTCAGTGTTTCCTCCACATGAGAACTGGTCAGCTGAAATG--AAATGT---------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-31262.000000
s ce10.chrX             3671339 162 + 17718866 --------CTATTGCATTATCAAAACTTTGTTTGAACTTTTTGATTCTAGGCGGCATTTTTAAGGCAACAAAAAACAATATGACTTATGAGTAGTGTGGAAATTGTTTAAAAAAAACTACAGCCAAAAGGTAATGACAAAGTTC-----AAAATTGATCAAATTTTCTGAAATCA
s caeRem4.Crem_Contig0   786219  44 -  4500979 -----------tttctAAATTTAG--------TCAAT----GGATTGTGCTCAAC----------TAACTGAGATCA--------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold630  5785943  82 + 20921866 ---------------ATAATCAAA--------TAAAC-GTCTGAAATACCAGGGC---------------GAGATCA-----------------------AAGTGGCTAA--------------------TAATGTGGGAGTCGGTAATACAATTGAT-AAATCA----------
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2057418  72 +  4147112 ---------------ACAATCGAA--------TGAAC--TCTGATTTAACAAGGC----------CAGCTGAGATCA-----------------------A---------------------------------TTGAGAG--------ACACTTTATCAAATTATCTGAA----
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18142   97062  66 +   343467 TTAGCAAATTTATGTACAACTCAA--------TAAAC--TATGTAATTTCATTTC----------AAACTGAAAATA-----------------------GATTAACCC------------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8802453   1 + 21540570 I

a score=0.000000
s ce10.chrX             3671501 71 + 17718866 TCCAAAACTGTTTTGCTTGAAATTATTCAAAAAATGCGACTTTTTTAATTGGAACTTTTACTAAGAATGTT
e caePb3.Scfld02_0      2057490  7 +  4147112 I
e caeJap4.Scaffold18142   97128  0 +   343467 C
e cb4.chrX              8802453  1 + 21540570 I
e caeSp111.Scaffold630  5786025  4 + 20921866 I
e caeRem4.Crem_Contig0   786263 32 -  4500979 I

a score=-2109.000000
s ce10.chrX             3671572 98 + 17718866 ACTGGAAATTCAAAAAAACCTAAGTACTTATGGAATCTTTCATTTTTATTTTTGTCACCCATGTTGAGTTACTCTGTTTATTGATATCAAATTCCTCC
s caeJap4.Scaffold18142   97128 25 +   343467 --------------AGTAGCTCAGTTATCATGAAAGCGT-----------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2057490  7 +  4147112 I
e cb4.chrX              8802453  1 + 21540570 I
e caeSp111.Scaffold630  5786025  4 + 20921866 I
e caeRem4.Crem_Contig0   786263 32 -  4500979 I

a score=0.000000
s ce10.chrX             3671670 11 + 17718866 AACGATCTATC
e caePb3.Scfld02_0      2057490  7 +  4147112 I
e caeJap4.Scaffold18142   97153  0 +   343467 C
e cb4.chrX              8802453  1 + 21540570 I
e caeSp111.Scaffold630  5786025  4 + 20921866 I
e caeRem4.Crem_Contig0   786263 32 -  4500979 I

a score=-2979.000000
s ce10.chrX             3671681 27 + 17718866 TTCCATCTTCAAAAAAAATTAAAACAA
s cb4.chrX              8802454 27 + 21540570 TTCTAGACTCTGGAAAAAGCGAAATTC
i cb4.chrX              I 1 I 5
s caeSp111.Scaffold630  5786029  6 + 20921866 --------------AAACAC-------
i caeSp111.Scaffold630  I 4 C 0
s caeJap4.Scaffold18142   97153 12 +   343467 ---------------AAAGTAGTACAT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2057490  7 +  4147112 I
e caeRem4.Crem_Contig0   786263 32 -  4500979 I

a score=-1056.000000
s ce10.chrX             3671708 5 + 17718866 AATTC
s cb4.chrX              8802486 5 + 21540570 TTCTC
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   786295 5 -  4500979 AGCTC
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold630  5786035 5 + 20921866 GTCTC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   97165 3 +   343467 -ATT-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2057490 7 +  4147112 I

a score=157637.000000
s ce10.chrX             3671713 454 + 17718866  
s cb4.chrX              8802491 437 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   786300 421 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold630  5786040 408 + 20921866  
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2057497 427 +  4147112  
i caePb3.Scfld02_0      I 7 I 15
s caeJap4.Scaffold18142   97168 449 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-3785.000000
s ce10.chrX             3672167 21 + 17718866 GAATTTAATTTGATAACATCG
s cb4.chrX              8802932 10 + 21540570 -AATTAAATTT----------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold630  5786451 21 + 20921866 AGATTTCATTTAGTTTTGTTT
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2057939 21 +  4147112 aaatctttttttttattcgtc
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18142   97617  9 +   343467 -AACTTTTCA-----------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   786721 20 -  4500979 I

a score=-13697.000000
s ce10.chrX             3672188 105 + 17718866 AACGTGCAA--GACTTCAAGAC-TATTTGAGTTTTGAC-GTAATGACGTTAT---------TCGAAAAAGACGAACAATGAAAGAATCAA------AACTGAAC-ATTTTATTGA--ATTTCATA--AT
s cb4.chrX              8802942  79 + 21540570 ----TGCGGAAACCTTGAGAcctatttcaaaacttttc-ttaaTGAC-TCAG----------------------------aaagcacaaa-----------aaa-gttttattgg--AATTCGAGAA--
i cb4.chrX              C 0 I 77
s caeRem4.Crem_Contig0   786741 105 -  4500979 GACGTGCAg-----ttaaaaaagaatttgaaactttACTTTAATGAC-TCATTAGAAAATATAGGAAGTAAC--------AAAGCACATAAGGAGAAACGGAAC-ATTTTATTAG--ATTTG-------
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold630  5786472  91 + 20921866 CACGTGCAT-----TTT-GAGA-ACTTTGTATCTGTTT-TTAATGAC-TCAT---------TAGAGAGTAAT--------Aggagacaaa------aaatgaactttttcattaG--AAAATGTA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2057960  93 +  4147112 aACGTGCGC-----TCTAGAAA-GTTCCAAAATAATTG-TTAATGAC-TCat---------taaaaaagaacaa------agaagacaaa------aactgaac-atttcatTTG--ATAAAATA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   97626  81 +   343467 --AGcacaa--aagtttaaaaa-actccattttttttc-----tgac-tcAT---------CAAATTA------------AGTAGacaca----------taat-tttttattaatcaAGTAGT-----
i caeJap4.Scaffold18142 C 0 C 0

a score=927.000000
s ce10.chrX             3672293  74 + 17718866 TTTGCTCAAATAA------AGT-ATGTTTTTTTTCATGAAG---AATTCAGT------ATAAAA---AAGTAGACAAAGAGCTGCAAAAATCA--------
s caeRem4.Crem_Contig0   786846  82 -  4500979 TGTACAAAAATAG--ACATGAT-GTAATTTCCGATAGAACG---GACTCAATTATGATATAAA-----TGTAGACAACGGATGTTGAACGTCA--------
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5786563  69 + 20921866 ----CGAGAATAACACTTTGAT-GCAATTTCCGGTGG----------------AAGAGATAAAA---CAATCGAGAACGGACATTTTACGTCA--------
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      2058053  82 +  4147112 ---CCAAGAATAGCTCTTTGAT-GTAATTTCCGTCAGAACA---GACTCAATTAAGAAATAAAA----AGTACACAACGGATGTTGTACGTCA--------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18142   97707 101 +   343467 TTTGCAAAAACGAATGACTGTTCGCAATTTCCGTTGGAACAGTCGACttaattatgaaaaaaaagagaagcgTGCAGTGAACTTTGTGATTAACCTAATTA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8803021  77 + 21540570 I

a score=88631.000000
s ce10.chrX             3672367 167 + 17718866 ---AACATTGTTCTGTTGATCAGAAGGAAGTGAATATGCAAAATGCGAGGGCCATGAATGGAAAAACGTTTGCAAATTCTGAACATGCTGAGACGATGGAT---TTTG------TGGCGAAGG------AGAACGTTCGTCAGACTTCTTCATCATGCTTTTTCGAAGAGGAGATGTACATCTGA
s cb4.chrX              8803098 173 + 21540570 ---attattgtaGTGAGAATCAGTGGACAATGGGTACGGGAAACGCGTGGGCCATCCTTGGAAAAACGATTGAAGATTAGGCACTGGTTGTGTGGGTGCTA---TGTATTGCAGTGGGGATGG------AGAGCGGTCCTCGGACTTTATGATTTGACTTTTTCGGAGAGGAGAGTTGCACCTGA
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig0   786939 179 -  4500979 ---ATTCTTGTTCTGTTGATCAATTGGAAGTTGGTACGAGAAGTGTGTGGGCCATCCTTGGAAGAACGATTGTAAACTGGGCATCGGTTGTGGCGGAGAGA---CGTATGGAGTTGGGGATGGGGATGAGGAACGTTCGTCAGGTTTGCAGATCATGCTCTTTCGGAGTGGTGAATTGCATCTGA
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  5786643 167 + 20921866 ---atttttgttttgctgATCTGTTGGTAACGGATATGAGAAATTGGTGGGCCATCCTTGGAAAAACGACTGGAAGTTGGACATTGGCTGGGATGGTGCAA---cgaa------aggagaagg------agaacgTTCATTCGATTTGATCATCATACTTTTACGAAGAGGGGAATTGCATCTGA
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0      2058146 170 +  4147112 ---ACTTTTCTTGTGTTGATCAGTAGGAAGTGAATAGGCAAAATGCGTGGGCCATCCTTGGAAGAATGattgaagatttgaaactGGTTGAGTTGGTGGAGAATTGTA------TGGAGAAGG------CGAGCGGTCTTCACTTTTCATCATCATACTTTTTCGAAGAGGCGAGTTACATCTGT
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18142   97808 170 +   343467 TGCACTCTTGTTTTGTTGATCGGTTACTATAGGGTAAGAAAAGTGAGAAGACCATCCTTGGAAAAGAGTTTGAAGATTTGGAACAGGTGCTGGAGGTGGAA---TATG------TTGAGATGG------GGTTCGTTCGTCAGCCTTCATTATTAATGCCTTGCGAAGTGGAGAGGTGCATCTAG
i caeJap4.Scaffold18142 C 0 C 0

a score=910.000000
s ce10.chrX             3672534 1 + 17718866 A
s cb4.chrX              8803271 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   787118 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5786810 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   97978 1 +   343467 A
i caeJap4.Scaffold18142 C 0 I 17
e caePb3.Scfld02_0      2058316 0 +  4147112 C

a score=546.000000
s ce10.chrX             3672535 1 + 17718866 A
s cb4.chrX              8803272 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   787119 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 64
s caeSp111.Scaffold630  5786811 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 86
e caePb3.Scfld02_0      2058316 0 +  4147112 C
e caeJap4.Scaffold18142   97979 17 +   343467 I

a score=-664.000000
s ce10.chrX             3672536 151 + 17718866 TTTTACGGGTTT---GATTATTGAATGTTTACATAACTTAGATTTTATATGGTACGGGCACGTAAATTGACAACACTTATTGCTCATTTATTTTTTAAAATGTCAACGTG---GACGTTTTATATT-----TTTCAATTTTTTTAGTTTCTTTGGGAATTCA
s cb4.chrX              8803273 156 + 21540570 GTTTCAGTAATTTTAGATTCGAAAAGGCTGACA---ATTACAGTATCGGTCTCacagaaacacaaa---aaaattttcagtgttcagccattttagtcattttcagtgagtctggagctcgacattcaagtttccaataattaaaatttttggaggatGTCG
i cb4.chrX              C 0 I 28
e caePb3.Scfld02_0      2058316   0 +  4147112 C
e caeJap4.Scaffold18142   97979  17 +   343467 I
e caeSp111.Scaffold630  5786812  86 + 20921866 I
e caeRem4.Crem_Contig0   787120  64 -  4500979 I

a score=0.000000
s ce10.chrX             3672687 40 + 17718866 CGAGTACTTTCATTTTTATTGTTACTGTTTCAATTTTATT
e caePb3.Scfld02_0      2058316  0 +  4147112 C
e caeJap4.Scaffold18142   97979 17 +   343467 I
e cb4.chrX              8803429 28 + 21540570 I
e caeSp111.Scaffold630  5786812 86 + 20921866 I
e caeRem4.Crem_Contig0   787120 64 -  4500979 I

a score=-4607.000000
s ce10.chrX             3672727 428 + 17718866 AATTCATTTTACATCTAAAATTTGAGAATTAAAACGAAATCTGAAAATTGAGCAAAAACATTTGTCAATTGGGCCTAGGGTACAGCTTTTAAAAAAACTAAGCTGAAAAACGCAAGGCTCACAATTAAATCTAACATTTGACCTTAAAAACTAAGCCTCAAAAGAGAGCTTCAGATTTCAGGCTAAAGTTTTTAAGCCTATGTTGTGAGGCAAGCTTGTTGAACGTAGAGTTTCAGATTCAACTTCTAATATAGGTTTTCAGGCTTTCTCAAAATAAAGGATATGTCAGTCAACGAATTTCTGTTCAA--AATTTTGAAAAATGCAAAAATTATAGGTTTCGCCTTTTTTTCATCAATTCTACTGTGAAAATTTTTTAGCGGATAAATTTCAAAACTGGGATGTACCAACAATTTTAACATGAAAATTAA
s cb4.chrX              8803457 207 + 21540570 aatttgtttttttttgtcaatttctgtacaaaaacga------------gcaaaaaagtattttttagT-------------------------------AATCGacaaac-----------------------------agctgaaaaactagg---------aggtctcgaaaattctg--------------------------------------cgaatgaaaagtttt------------caatctaggt-------ctgttttaaa---------------------------cTCTTCAATTAGTTCCAAATCATCCGAAACTTGATGGCCGAG--------TTAcagattct----tgaaaatg----------------------------------------------accaaaataac
i cb4.chrX              I 28 C 0
e caePb3.Scfld02_0      2058316   0 +  4147112 C
e caeJap4.Scaffold18142   97979  17 +   343467 I
e caeSp111.Scaffold630  5786812  86 + 20921866 I
e caeRem4.Crem_Contig0   787120  64 -  4500979 I

a score=-1358.000000
s ce10.chrX             3673155 42 + 17718866 AAAAAAAAACATTTAAACTTGCTTCGACCATTACTAATAAAA
s cb4.chrX              8803664 20 + 21540570 -------------aaaa---aattcgac------tgaaaaat
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2058316 41 +  4147112 AaacaaaaacctcaaaatggAATTCAATCA-TAACGCAGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   97979 17 +   343467 I
e caeSp111.Scaffold630  5786812 86 + 20921866 I
e caeRem4.Crem_Contig0   787120 64 -  4500979 I

a score=-4933.000000
s ce10.chrX             3673197 33 + 17718866 AC--GtttatttttaaaaatttttttGATC-AAATA--
s cb4.chrX              8803684 20 + 21540570 ac--gtttttccTGTATGATTT----------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2058357 21 +  4147112 ACTAATTTTCATTAGCCGACT-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   97996 36 +   343467 AC--ATTTATTTATGTTAGGTTGTAAATTCAAAATACC
i caeJap4.Scaffold18142 I 17 C 0
e caeSp111.Scaffold630  5786812 86 + 20921866 I
e caeRem4.Crem_Contig0   787120 64 -  4500979 I

a score=180.000000
s ce10.chrX             3673230 1 + 17718866 A
s caeSp111.Scaffold630  5786898 1 + 20921866 a
i caeSp111.Scaffold630  I 86 C 0
s caePb3.Scfld02_0      2058378 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   98032 1 +   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8803704 0 + 21540570 C
e caeRem4.Crem_Contig0   787120 64 -  4500979 I

a score=234331.000000
s ce10.chrX             3673231 292 + 17718866 ACCTTCGTTTTTTAGTTCTCCGGTTCTGAAACCAGGTCTTCACTTGACATTCAGTGAGTTCAATTGTTTGAGCCAACTCGCCGCGTCGGTCTTTGCAGATGTATTCATTCTTTGCAAATTCCAACTCCAAAAGTGTGACCTT-AACATATTAAATTGAGTGGAAAATAATTGGAAATGTCAATTATTCTAA----TGTTTCACCTGCTCCGATGTGAAAGTTGTTCTTTTAGTCGGTCGATTGCTCCTTTTCGGTGGCGGTT-----TGATGTTCTTAATTTGTTGGGA----CTAAATTGGAAAA
s cb4.chrX              8803704 292 + 21540570 ACCTTCTCTTCTTAGTTCTCCGATTTTGAAACCATGTCTTCACTTGACACTCCGTCAGATCAATCACTTGAGCGAGTTCACCTCTTCGATCTTTGCAGATGTATTCATTCTTTGCAAATTCCAATTCCAAAAGTGTGACCTTAAACAGAACAAATTGAcatg--aataattgaaaatgccAA------GAGCCATTTTTTCACCTGCTCGGATGTGAAAGTTGTCCTTTTGGTCGGTCGGTTGTTTCGTTTTGTTGGTGGTT-----TGATGTTTGGGACCAGTTCAGT-AATCTAAAATAAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   787184 292 -  4500979 accttcttttctttgttctcCTGTTCTGAAACCAAGTTTTAACTTGACATTCGGTTAAGTCAATAACTTGTGCCAATTCGCCTCGTCGATCTTTGCAGATGTATTCATTCTTTGCAAATTCCAATTCCAAAAGTGTGACCTT-AACAGAATAAATTGACTGG--AATAATTGGAAATGTCAATT-TATGAG----TGGTTCACCTGCTCAGAAGTGAATGTTGTCCTTTTGGTCGGTCGGTTGCTCCGTTTTGGTGGTGGTT-----TGATATTTGGGGTTGACTGTGA-CATCTGAATTCAGAAC
i caeRem4.Crem_Contig0  I 64 C 0
s caeSp111.Scaffold630  5786899 290 + 20921866 accttctcttttttgttcttctatTCTGAAACCAAGTTTTCACTTGACATTCGGTCAGATCGATGACTTGAGCCAACTCGCCACGTCGATCTTTGCAGatgtattcatttttcgcaAACTCCAATTCTAGCAGTGTGACCTT-AACAAAGCTAGTTGACTGG--AATAATGGGAAATGTGAATT-CTGAAG----TGTTTCACCTGTTCCGAAGTGAATGTTGTCCTTTTCGTTGGTCGATTGCTTCGTTTTGGTGGTGGTT-----TGATATTAGGGGTTTGCTGAGA-CATCTAAAT--GAAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2058379 290 +  4147112 ACCTTCTCTTTTTAGTTCTTCTATTTTGAAACCAGGTTTTAACTTGACATTCAGTGAGGTCTATGACCTGTGCCAACTCTCCACGTCGATCTTTGCAGATGTATTCATTCTTTGCGAATTCCAATTCCAATAATGTGACCTT-AACAGAACAAATTGActgg--aataattgaaaatgtcaatt-tttgag----tgtttcaCCTGCTCGGATGTGAATGTTGTCCTTTTGGTCGGACGATTGCTCCGTTTTGGTGGTGGTT-----TGATATTGGGGGCTTGTTGGGA-CATCTAAAT--GAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   98033 290 +   343467 ACCTTCtttttttAGTCCGTCTATTCTGAAACCACGTCTTCACCTGGCATTCGGTGAGATCGATGACTTGAGCCAACTCACTTCTTCGATCTTTGCAAATGTACTCGTTTTTTGCAAATTCTAACTCCAATAGTGCAACCTT-CAGGGATTTTTTGGTATTG--GATGAAGAGGggtgaaa----tgaaaa----tttatcaCCTGCTCAGAGGTAAAAGTTGTTCGCTTGGTCGGCCGATTGCTTCGTTTTGGTGGCGGCTTGGTGTGATGCTGATGGTTTTCTGGATTTATCTG-----Gaaaa
i caeJap4.Scaffold18142 C 0 I 1233

a score=-3339.000000
s ce10.chrX             3673523 11 + 17718866 TTGATT--------ACTTT
s cb4.chrX              8803996 10 + 21540570 AT-ATT--------ACGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   787476 15 -  4500979 TT-ATT---CCTAAACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5787189 18 + 20921866 TT-CTTAGCCAGAAATGCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2058669 13 +  4147112 CT-ATT-----GGAATGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   98323 1233 +   343467 I

a score=27384.000000
s ce10.chrX             3673534 370 + 17718866 TTAAA---AATTA-TCAAATACTTACCGA---ATT-------GGTGTCATTTG--------ACCATG---GAAAGAAGTCATATGCAAAT---TTGTTTGACGTCATATTCTG----------ACAAAGGGAAGGT----TAA--AAAAATAATATTATTT-----------CAAACTTA------CCGTTT--TA----GACGTCAT-GCT----AA--CAACACAATG-AGCAAAACAGG-----GGCAATGAAAGCT--CAGAGCA-ATTGGATGTTTAATTTGAAGGA--AACGACTTTATGACTTTTCAGGATGGGACATTACATGGAAAAGAGCTGTGCAATTA-GCATGGAG---CGTCGTT-------GGAAAACACG----TCGTTAATTGTAGA-ATTGTAG----------CAGATCCTAC------CCTACCCGGTAATAAAG--------ATTCCAGCG--TCAAACAATTATATC-TATTTGTT
s cb4.chrX              8804006 386 + 21540570 TTTAA---ATTCA-TGTTAGACTTACGGAGTTGAT-------ATTATTGTTAG--------GCCAAGAATGAAAGAAGTCGTAGGAAAAC---TTATTGTGAggcaaattcta------------aaaattaatat----aTA--AACCAAGGAATCTTACCAAG-------GGAACTCACCGATGCCGTGGCCGAATTCGACGCCATGGGT----AAACCAATAGGATACAA-----------------AATGACAGCTCCCGGATAAGAATGGGTGTTTAATTTGATGCCAAAACGACTTTATGTCTTCTTATTGGGGG--AATACAAGGAAAAGAGCTGAGCAATTAGGCGTCAAT----GTCGTTTCGCATGTAAAAACACGGGTCCGATTAATT----------TGCGTAA----GCC-------ACAATGCGCCCTGGGGGTCATAAAG-----------CCAACACCACGGATGACTTTA------ATTTG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   787491 382 -  4500979 ATAGG---GACCA-------ACTTACGGA---TGT-------ATTAGTATTAT--------TCCACG---TAAAGAAATCATGTGAAAAC---TTATTATTTCCCATATTCT-------------GAAATAGATATTcagaga--aactgaaataatagaTTCAA-------AGAACTCA------CCGTGG--GA----GACGTCAT---T----TTACCAACAGAATG-AG-----------------AATAAGAGCTTGGGGAGAA-ATTGGATGTTTAATTTGAAGCC--TACGACTTTATGCCTTTTCAGGATGGG-CAATACAAGGAAAAGAGCTGTGCAATTA-GCACCACT-TGGGTCGT--------TGAAAACACG----TCGTTAATTGGAGCTATCGTATGTGA----GCCAGATCCAACAATTATCCTATTTGGTCATAAAG-GTTTGGCCTTGTAACCACATGGATAATGTTATTGAACCTATT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5787207 373 + 20921866 TTTAC---GGGTT-------ACTTACGGA---AAT-------GTTTGTATCTG--------TCCATG---GGAAGAAATCGTATGGAAAT---TTGTTGCGAGGAACGGTCT-------------GAAGTGCTGAT----GAT--AATCAGAAAAGCGT---GAAACATATTGAAACTCA------CCGTGC--TG----GACGTCAT-CCT----AAACTGACAAA-TG-AA-----------------ATTGG-------GGAAGAA-ATTGGACGTTTTATTTGAAGAC--AACGACTTTATGTCGTTTCAGGATGTG-CAATACAACGAAAAGAGCTGAACAATTA-GCACCGCCTTGGTTCGTATCT----TGAAAACACG----TCGTTAATTGGAGCTATCGTAGGTCA----GCCAGATCCAACAATTACTCAATTGGGTCATaaaaccctttttcttcgagcGAATTGGATA---------AATTTATC
i caeSp111.Scaffold630  C 0 I 55
s caePb3.Scfld02_0      2058682 368 +  4147112 TTTCTTTGGGCTC-------ACTTACGGA---AGT-------GTTTGTGTTAT--------TCCATG---GGAAGAAGTCATAGGAAAAC---TTGTTGCAAGGTACATTCT-------------AAATTAAATAT----GACGAAATCAGATGAATATCTAGGAAC-----GGAACTCA------CCACAT--TG----GACGTCAT-TTTGTTGAAGCttaaata--g-aa-----------------aatga-------aaaagga-aatgtaaGTTTAATTTGAAGAC--AACGACTTT-------------ATGTG-GGATACAAGGAAAAGAGTTGAACAATTA-GCACCGCC-----TCGTTTCT----TGAAAACACG----TCGTTAATTGGAGATATTGCAGAGCA----CTCAGATCTCACAATCACCCAATTGGGTAATAAAA-CCTTCGGGTTGTGGTGAATTGGATA-TTTTATTGAACCTATT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   99556 372 +   343467 -ttaa---aaccaaaaaaaagtttaccgA---ATTTTGAATAATTGTTGTCGGATTAGAGTTCCAGG---ACAGAAAATCATAAGAAAGCGGTTCACTTTTAGTAGAATCCTGataacgaaaaacaaaaaaaattt----aca--aattcAAATATCAG-------------CAAACTCA------CCATGT--TT----GCTATTAT---T----GTGCCAACTGAGTA-GTCAAAAATGGGAATAGGGAATGTCAGCT--CAAGGCA-ATTGGACGTTTAA-TTGAAGAC--GTCAACTTTATGCCTTCTCAGGATGGA------------AAAGAGCTGTGTAATTA-GCACCATACTCTAGCGTATGG----TGAAAACACG----CTTTTAATTGGAGCCGGAGCACCAAGCAATACCAGATCGGACAATTAT--------GTTATACGA-C-----------------------------------------
i caeJap4.Scaffold18142 I 1233 C 0

a score=756.000000
s ce10.chrX             3673904 7 + 17718866 CATTGTA
s cb4.chrX              8804393 7 + 21540570 CATCACA
i cb4.chrX              I 1 I 52
s caeRem4.Crem_Contig0   787874 7 -  4500979 CATGGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2059052 6 +  4147112 -GTTAGA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   99928 7 +   343467 CGTAAAG
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5787580 55 + 20921866 I

a score=-2161.000000
s ce10.chrX             3673911 44 + 17718866 GGCTTCTG--TTCTCTTTTCCAGCCTATCAA--------------------------TTTGCAGAACAAAAT
s caeRem4.Crem_Contig0   787881 31 -  4500979 GACACTTT--GTTTCTTATAGAG---------------------------------------AAAATAGAAT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2059058 31 +  4147112 AGCACTTG--GTTTCTTTGAGAA---------------------------------------GAAACGCAAT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   99935 72 +   343467 GGCTTCTTCCGTTTCCCTTAAGGCTGATAAAAAATTAACTCGGTTGTCTAAACAACCTTGCCAAAAGACaat
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8804400 52 + 21540570 I
e caeSp111.Scaffold630  5787580 55 + 20921866 I

a score=-2380.000000
s ce10.chrX             3673955 2 + 17718866 GC-
s caeRem4.Crem_Contig0   787913 1 -  4500979 G--
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold630  5787635 2 + 20921866 GT-
i caeSp111.Scaffold630  I 55 C 0
s caePb3.Scfld02_0      2059095 2 +  4147112 GT-
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142  100007 2 +   343467 -tc
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8804400 52 + 21540570 I

a score=-32981.000000
s ce10.chrX             3673957  71 + 17718866 ------------------------TTCTTGTGATTCAT---GACTCATTTCATCA-AAA--ATTGTT-----GGTAG-GT-----ACCT---GAA------------------------------AACATGTTTCAAAAG------------------AA--------------GTA
s cb4.chrX              8804452  93 + 21540570 ------------------------TTCTTGTGATTCGT---GAATCA-TCCTTTGTGAA--ATTGTTTTA--GGTACAAA-----GACTCTGGAAGAGAAGA-----------------------GACAACAAACA-------------CGTCGTGTTGA-----------Tgagct
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   787920 123 -  4500979 ------------------------TCCTTGTGATTCAT---GAATCA-TCCAACA-GAA--ATTGTTTCA--GGTAC-Ac-----gattc--gaagaaaaaactgaaacaa-c------------gGCAATGAACAGAGAAtgttcttctttcaatttaaGATTCCCTTTCTCAGTT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5787637 114 + 20921866 ------------------------TTCTTGTGATTCGT---GAATCA-TTTGTCA-AAA--ATGTTCTTACCGATAC-TG-----GAAT---AAAGAAACAATGGAAACCA-CAATAATA-----AACATTGTTGGGTAG----------AAGAAGTTGA-------TTCATGTGAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2059097 133 +  4147112 ------------------------TCCTTGTGATACGT---GAATCA-TTTGTTA-GAA--ATGCTATGATCGGTAA-agatggaaaat---tgagaaacaacaacagcagcCAATAATAGAAATAATATTTTACGGAAGactc-----aaagaaaataa----agtttgGTGTATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  100009 119 +   343467 tttaattttccaATACCTAGTTTTTCCTGGTGATTCACTGGAAAACA-ATTGTCA-GCAGCGTCGCGTTATAATTAATAG-----TCAT---GATGAAAAGGTAACAAATAACACCTGAAAGAGAAGCA------------------------------------------------
i caeJap4.Scaffold18142 C 0 I 93

a score=-14476.000000
s ce10.chrX             3674028 31 + 17718866 TCAAT-------------AG-------------CTGTTTATTGATAA------------------------------CAT---------AGTGAAC
s cb4.chrX              8804545 45 + 21540570 ttttttgtttgatga---aG-------------CCATTTCTCATTAG--------------------------ATAGCTT---------CGAAGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   788043 93 -  4500979 TCTATAGGTTTAGGG---AATGAGCTCCTAGACCTATTTCTCATTAAACCTCaatccttttcattttcttgacaTATCCTGAAGGCGAATGAGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5787751 44 + 20921866 TTATTTGTTGGAGAATCTAA-------------TTTCTAAGGTTTGG------------------------------CCT---------TACAAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2059230 44 +  4147112 TTTATCTTTGTTTAA---AG-------------TTACCTAGAATGAA------------------------------CCT------CGACAAAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  100128 93 +   343467 I

a score=-55038.000000
s ce10.chrX             3674059  62 + 17718866 ---------------------------AGTCTGA----ACAGTTTC-----------------------TGGGGAG----------AGAT--------------------------------------------ATTTCACG-------------------------------------------AAAACATA---------------------------AATTTTTAA--GGGAAAAATGG-----
s cb4.chrX              8804590  72 + 21540570 ---------------------------TGCCG------TCCAGTTCAAGGctattaa----t-------tgaaaaa----------aaaa--------------------------------------------ctgaca---------------------------------------------agaATATA---------------------------ACTTTATTGGAAAGGGAATCAA-----
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   788136  97 -  4500979 ---------------------------CCTCGACATGCACCGCTTTAAAATCAATcacaatt-------tgaaaga----------aaaa--------------------------------------------attctataatact----------------------------cttctttttcaagatAAA---------------------------CCTTTCTTT--AAGGTCATACA-----
i caeRem4.Crem_Contig0  C 0 I 63
s caeSp111.Scaffold630  5787795  90 + 20921866 ---------------------------TTCTTAC----ATAGTGTCACTATCAATAATTATA-------TAAGGCA----------AAAATCATT---------------------------------------CTtgaac----------------------------------attcatttttcagaaaca-----------------------------tttgCCA--AGAGAAGTAAA-----
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      2059274 209 +  4147112 ---------------------------ATCTGAG----ACAGACGCAAAACTAACGACCAAAGCAAGATTAGAGCACCGAGCTCTCAAAGCCATTGATGATTTATATCCTCTGTCGCACAACTGTACTGCTCAGCTTGTACTATGTTAGTGGTTAACTCAATTAGTCCacaatctgtttttttgtcgAATACAGTCTTTTGTTATATTTTCGAGCTCTTTATTTTGTTA--AGATCACTTGA-----
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold18142  100221  98 +   343467 AGACTGAAGGCTGGAGGGCGAGCAAGTTTTTATT----AGAGTTCCAACATGGCAAACAAAc-------tgagcga----------aaaa-----------------------------------------------------------------------------------------------aaaacaca-------------------------------cacaa--atGGTAATGGGGATGG
i caeJap4.Scaffold18142 I 93 C 0

a score=-7541.000000
s ce10.chrX             3674121 25 + 17718866 GGAGAAAATGT-----GTAGA---------AAAAATAG-G-
s cb4.chrX              8804681 37 + 21540570 AGATCAAGTGCCATGATTAGAAGTTAAA--AAGAATAGT--
i cb4.chrX              I 19 C 0
s caeSp111.Scaffold630  5787896 28 + 20921866 AGTCAAAA----------AGAAGTGgagataaaaataa---
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0      2059511 33 +  4147112 AGCTCAACGGT-----TTAGaagacaaaataaaaatat---
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18142  100319 25 +   343467 --------------GGgtttaacatgaaaaaaaaacag--a
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   788233 63 -  4500979 I

a score=455.000000
s ce10.chrX             3674146 13 + 17718866 AACGACACAATGC
s cb4.chrX              8804718 13 + 21540570 AATGATAAAAGgt
i cb4.chrX              C 0 I 77
s caeRem4.Crem_Contig0   788296 13 -  4500979 AGAGACACATTGC
i caeRem4.Crem_Contig0  I 63 C 0
s caeSp111.Scaffold630  5787924 12 + 20921866 aatgaca-catgc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2059544 13 +  4147112 aatgacACCATGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  100344  7 +   343467 -----tacaAGC-
i caeJap4.Scaffold18142 C 0 C 0

a score=4803.000000
s ce10.chrX             3674159 9 + 17718866 AGAGATCAA
s caeRem4.Crem_Contig0   788309 9 -  4500979 AGAGATCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5787936 9 + 20921866 ggagatcaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2059557 9 +  4147112 GGAGATCGA
i caePb3.Scfld02_0      C 0 I 73
s caeJap4.Scaffold18142  100351 7 +   343467 AGAGATC--
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8804731 77 + 21540570 I

a score=-8105.000000
s ce10.chrX             3674168 67 + 17718866 CGATCATGAGATGAAAACATACAAATAGATGGACCAAAATAGCTGAAA-ATTTAAAAAAAAGA-----------------GGAAA-
s caeRem4.Crem_Contig0   788318 53 -  4500979 -----ATGACATG-----------ATAGTgaacataaaa-atttaaaa-attt--taaattgggAA------------CATGAGT-
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold630  5787945 46 + 20921866 ----aataaaa-------------atagtttgcttaaaa----taaaa-CCTCAATAAATTGT-----------------TGAAT-
i caeSp111.Scaffold630  C 0 I 10
s caeJap4.Scaffold18142  100358 83 +   343467 ---TTATGTTTTAAAAGTATGTATTTAgttcagtaaaaaaaaataaaatatccaTTAGATAGTGAAATTTTTGAAGGGAATGAATG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2059566 73 +  4147112 I
e cb4.chrX              8804731 77 + 21540570 I

a score=141.000000
s ce10.chrX             3674235 2 + 17718866 AA
s cb4.chrX              8804808 1 + 21540570 -G
i cb4.chrX              I 77 I 1
s caeRem4.Crem_Contig0   788416 1 -  4500979 -G
i caeRem4.Crem_Contig0  I 45 I 1
s caeSp111.Scaffold630  5788001 2 + 20921866 AG
i caeSp111.Scaffold630  I 10 I 8
s caeJap4.Scaffold18142  100441 2 +   343467 TG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2059566 73 +  4147112 I

a score=121941.000000
s ce10.chrX             3674237 186 + 17718866 TTACATAATTGCGCAACTATTTCTGATTGAATCAATTATTGAAGACTTTTGATTTTTAATAGCCGGTGGTGCTGATTCGGTCTCCCACCACGGACGTGGACGCTCTCCTTTGACTTTGATATCAATGATGTCGT---CCTC------------------ATCATCGTCCTCAGTGA---CCATGTTGAATGGCTCCAGAGAACGCTGAAA
s cb4.chrX              8804810 195 + 21540570 TCACATGATGGAGCAGTTATTGCGAACAGAGTCGATGAGCGACATCTTCTGGTTCTTAATGACTGGCGGCGCTGACTCGGTTTCCCACCATGGACGTGGACGTTCTCCTttgactttgagctcgatGTCGTCCT---CATCGTTGTCGGA---------GTCGTCGTCGTCGCTCA---TCATGTTGAATGGCTCCAAGGTGCGCTGAAA
i cb4.chrX              I 1 I 526
s caeRem4.Crem_Contig0   788418 186 -  4500979 TTACATGATGTTGCAGTTGTTTTTGACAGTGTCGATAATAGATGACTTCTGATTCTTGATAGCTGGTGGCGCAGACTCCGTCTCCCACCAAGGGCGTGGACGTTCTCCTTTCACCTTCATGTCGATGATGTCGT---CCTC------------------GTCGTCATCATCGGTTA---TCATGTTGAAAGGCTCTAGAGTACGCTGAAA
i caeRem4.Crem_Contig0  I 1 I 36
s caeSp111.Scaffold630  5788011 186 + 20921866 TCACATAATAGTACAGTTGTTGCGGACTGTGTCCAAGAGCGAAGTCTTGTAATTTCTCATTGCCGGTGGGGCTGACTCTGCCTCCCACCACGGACGATTGCGTTCTCCTTTAACTTTCAGATCAATTGCATCGA---ACTC------------------TCCGTCGTCGTCATCGA---ACATATTCAATGGCTCGACAGTGCGCTGAAA
i caeSp111.Scaffold630  I 8 C 0
s caePb3.Scfld02_0      2059639 189 +  4147112 TCACATGATACTGCAGTTGTTGCGAACCGAGTCCATGAAAGAAGACTTTTGGTTCTTGATGACTGGTGGAGCCGACTCTTCCTCCCACCAACGACGCGAACGCTCTCCTTTGACTTTGAGCTCGATCTCGTCGATCTCCTC------------------TTCGTCGTCGTCACTGA---ACATGTTGAATGGTTCCAGAGTGCGCTGAAA
i caePb3.Scfld02_0      I 73 I 32
s caeJap4.Scaffold18142  100443 207 +   343467 TTACATGATGGAACAACTGTTCTTCACAGAGTCTAAAAATGACGGTTTGCGATTACGGATTACTGGTGGAGCAGACTCGGTCTCCCACCACGGACGCGGCTTCTCGCCCTTAACTTTCAGGTCAATGTCTtcct---catcatcatcatcatcgtaTTTGTCGTTGTCATCCTTGGAATACATGCTCATTGGCTCCAAGGTTCtctgaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=766.000000
s ce10.chrX             3674423  9 + 17718866 ---------ATCATTTTT
s caeSp111.Scaffold630  5788197  9 + 20921866 ---------TTCGTTTTT
i caeSp111.Scaffold630  C 0 I 51
s caeJap4.Scaffold18142  100650 18 +   343467 ataaaacagtttATTTTC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2059828 32 +  4147112 I
e cb4.chrX              8805005 526 + 21540570 I
e caeRem4.Crem_Contig0   788604 36 -  4500979 I

a score=282.000000
s ce10.chrX             3674432 3 + 17718866 TGT
s caeJap4.Scaffold18142  100668 3 +   343467 TGT
i caeJap4.Scaffold18142 C 0 I 17
e caePb3.Scfld02_0      2059828 32 +  4147112 I
e cb4.chrX              8805005 526 + 21540570 I
e caeSp111.Scaffold630  5788206 51 + 20921866 I
e caeRem4.Crem_Contig0   788604 36 -  4500979 I

a score=0.000000
s ce10.chrX             3674435 1595 + 17718866  
e caePb3.Scfld02_0      2059828   32 +  4147112 I
e caeJap4.Scaffold18142  100671   17 +   343467 I
e cb4.chrX              8805005  526 + 21540570 I
e caeSp111.Scaffold630  5788206   51 + 20921866 I
e caeRem4.Crem_Contig0   788604   36 -  4500979 I

a score=160.000000
s ce10.chrX             3676030 3 + 17718866 CTC
s caeJap4.Scaffold18142  100688 3 +   343467 CTT
i caeJap4.Scaffold18142 I 17 C 0
e caePb3.Scfld02_0      2059828 32 +  4147112 I
e cb4.chrX              8805005 526 + 21540570 I
e caeSp111.Scaffold630  5788206 51 + 20921866 I
e caeRem4.Crem_Contig0   788604 36 -  4500979 I

a score=-829.000000
s ce10.chrX             3676033 11 + 17718866 TTCAATCACCA-----
s caePb3.Scfld02_0      2059860 11 +  4147112 TTCATTAACGT-----
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold18142  100691 12 +   343467 ----TTCACAATACTT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8805005 526 + 21540570 I
e caeSp111.Scaffold630  5788206 51 + 20921866 I
e caeRem4.Crem_Contig0   788604 36 -  4500979 I

a score=190978.000000
s ce10.chrX             3676044 1012 + 17718866  
s cb4.chrX              8805531  887 + 21540570  
i cb4.chrX              I 526 C 0
s caeRem4.Crem_Contig0   788640  856 -  4500979  
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  5788257  850 + 20921866  
i caeSp111.Scaffold630  I 51 C 0
s caePb3.Scfld02_0      2059871  854 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  100703  761 +   343467  
i caeJap4.Scaffold18142 C 0 I 1041

a score=-14749.000000
s ce10.chrX             3677056 34 + 17718866 G---AAGTTACCATTTTCGAG------TCTTTAATAATAATAT
s cb4.chrX              8806418 35 + 21540570 agagaaatgttAGTTTTCA--------GCTGTGATGGTGAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   789496 32 -  4500979 C-AGACAT-TAAAATTAAA--------GTTGT-AGAAAGATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5789107 35 + 20921866 t------tttttgattgcaGAAACAACTCTGGGAAGTCAT--T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2060725 32 +  4147112 a------tcaaagtttttataA-----TCTGGCGTGTCAGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  101464 1041 +   343467 I

a score=119680.000000
s ce10.chrX             3677090 222 + 17718866 ---AACCACATACAAATATGCTCCCTCCTATATCATCAAGTTGGACAATGCAGTGACGGAGTGAGAGAATTGCAGACGGCTCGTATTTGCAGAGTGGCATCACACTGATTCTCTTGATTCCGTAAAGAAGAATATCATTGAACAGGAAGACCACGGTTTCCTGGTAGTTGGCTGATCCATTGAGCTCTCTCTGAAATTAACCAAA-TTAGGATTGAT------------------------------ACTAAAATG
s cb4.chrX              8806453 224 + 21540570 ---AACT---TACGAAAATGCTGCCACCAATGTCATCAAGTTGAACAATGCAGTGACGGAGTGAGAGAATCGCTGATGGGTCGTACTTGCAAAGTGGCATCACACTGAGTTTCTTGGTTCCGTAGAGAATGATGTCGTTGAACAAAAAGACCGCGGTCTCCTGATAGTTGGCAGTTCCGTTGAGTTCTCTCT-------GTCAGATAATAGGTTATC-------------------TCGGTCCGCACGCCAAAAAT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   789528 250 -  4500979 ---AACT---TACGAAAATACTTCCGCCGATGTCGTCTAGTTGGACAATGCAATGACGGAGCGATAGAATTGCAGATGGCTCGTACTTGCAAAGTGGCATTACACTGATCTTTTTGATCCCATATAGAAGAATATCGTTGAAGAGGAAAACGACGGTTTCTTGATAGTTGGCGGTTCCGTTGAGTTCCCTCTGAAAGCCGACAGATGTTAAATTCTCCGTCCAGATGAAGCTGAGACCAGTACGTCCGGCACTAGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5789142 214 + 20921866 ---AACA---TACAAAAATACTTCCTCCAATCTCATCAAGTTGAACGATACAATGGCGGAGAGACAGAATTGCGGATGGATCGTATTTGCAGTATGGAACGAGACTGATTTTCTTGGTTCCATAGAGAATAATATcgttgaaaaggaaaacaacGGTCTCTTGATAATTGGCTGATCCATTGAGctctctctgaaaaacaagata-gATGGA-----------------------------------Gttaaaata
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      2060757 246 +  4147112 ---AACT---CACCTCCATGTTTCCTCCTTCATCGTCGAGTTCAACGAGGCAATGACGAAGTGCCAATATGGCCGATGGATCGTACTTGCACTGCGGCGTCAAGCTAATTTTCTTGGATCCATAAAGAAGAATGTCGTTGAAGAGGAACACTACGATCTCGCGGTAGTGTGGTGATCCGTGTATCTCTctctgcaaaaattgaga-attgaattAGT---CAAAGTTTTGTTAATAAAGGTATACAGGCTAAAACG
i caePb3.Scfld02_0      C 0 I 203
s caeJap4.Scaffold18142  102505 189 +   343467 AAATACT---TACAAAGATACATCCTCCAACATTATCATACGTCACATCACAATGACGAAGGGAGAGAATCGCGGATGGTTCATACTTGCACATTGAGATCACGCTAATCCTTTTTATTCCGTAAAGTAGAATGTCGTTGAAGAGGAAAACGACCGTCTCCTGGTAATTGGCAGCTCCGTTCAGTTCTCTTT----------------------------------------------------------------
i caeJap4.Scaffold18142 I 1041 C 0

a score=240777.000000
s ce10.chrX             3677312 435 + 17718866 TATATTACCTTGTACAACATTCCTTCCTTCAACAATACGCGTCCTGGCTCAAGAATGTGCCCATCCAGACCAAAATTCAGTTGGATTTGAAGGAGTCGTTCTCCATTTTCATAAGCTGTCATGCAGGATTGAATCTGATCGGAGAGCCCTTGCATACCCGACAACGCTTCTG--AAAAA-----AGTAGCT-------ATAAGAAA-ATCGTTCCAATAAATT----CTTACTGTAAAGGTTTGTCATATCATCTTTCTCAGTGCTGTAATTCATCAAATTTTGAATGAGCATGATATAGCGTGGAATGCGTTGAATTGGCATGATGAGGTATGTCTGGAGTTTCTTTCCATCAACTCTGGGGTCTTCCTCAATTTTGGTCAGAGCTTTGCGGAAGTCGTTGCGAGACATCAGTTTCTGGAAAGTAAAAA--TAATAAGGTATCATA---GATTT--TATT
s cb4.chrX              8806678 442 + 21540570 ATACTTACTTTGTACAACATTCCCTCTTTCAACAACACACGTCCTGGCTCGAGAACATGTCCATCCAATCCAAAGTTGAGTTGGATCTCGAAAAGACGCTCACCATTCTCATAAGCCAGCATGCACGATTGAATTTGTTCCGTAAGTCCTTGCATTCCAGACAACGCTTCTG--AAATTACC--AATATTAGACATCAATTCTAAG-TTT------ACAGA-GA--ACTTACTATACAAATTTCTCATGTCATCCATATCGGTACTGTAATTCATCAAGTTCTGAATAAGCATAATGTAGCGAGGGATGCGTTGGATTGGCATGATGAGGAAAGCCTGGAGTCGGCGTCCTTCGACACTTGGTTCGGCTTCTATAGAGGCGATGGCTTTGCGGAAGTCACTGCGAGAcatcaatttctgaaaattaagacTTTATTGGAGAATCGTT---AGTGT--TATT
i cb4.chrX              I 1 I 432
s caeRem4.Crem_Contig0   789779 440 -  4500979 TTACCTACCTTGTACAACATTCCTTCCTTCAGTAAAACTCTTCCAGGCTCCAGAACATGTCCATCCAGTCCAAAGCTCAGTTGGATTTCCAGCAACCTCTGTCCATTCTCGTATGCAATCATACAGGACTGCATCTGATCGGTGAGTCCTTGCATTCCACTCAACgcctctg--aaaataacataatAATCtctatgaacaaaaaa-atc------agagatgA--ACTCACTGTACAAATTCGTTATATCTTGTTGTTCCGTGCTAAACTTCATCAAATTCGATATGAGCATAATGTAGCGCGGAATTCTTTGGATTGGCATGATGAGATACGCTTGTAACTTCTTTCCTTCAACTCTCGGATCTTCTTCAATCTTTGCCAGAGCTTTGCGGAAGTCGCTACGGGacatgagtttctgaaacaacaGGATTTACCTTAGAA--------AGAGA--CAGT
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold630  5789367 435 + 20921866 --TCTCACTTTATACAACATTCCTTCTTTGAGAAGAACACGTCCTGGTTCAAGAACATGTCCATCTaatccaaaattcaattgGATTGTCAGAAGTCGTTGTCCATTCTCATAAGCAGCCATACATGACTGAATTTGTTCAGTGAGTGCCTGCATGCCAGTCAatgcttctg--aaaataac--atTCACTTGAA--AATACTAAA-ACT------GTGCATTT---CTTACTGTAAAGATTGGTCATGTCTTCTGGATCAGTGCTGTAGTTCATCAAATTCTGTATGAGCAAAATATAACGAGGAATTCTCTGAATTGGCATGATGAGATACGCATGTAATTTCTTCCCTTCGACTCTCGggtcttcttcaattctgtTTAGAGCCTTGCGGAAATCACTGCGTGACAtcagtttctgaaaacataatACATAAAGGAATATCA-----AATGA---ACT
i caeSp111.Scaffold630  I 11 I 27
s caePb3.Scfld02_0      2061206 441 +  4147112 GTTCTTACCTTGTACAACACTCCTTCCTTCAACAACACACGTCCTGGTTCGAGGATATGCGCATCCAATCCGAAGCTCAACTGGATATCCAGAAGGCGTTCGCCATTCTCATATGCCGCCATGCACGATTGAATTTGATCGGTGAGTGCTTGCATGCCGGTCAGAGCTTCTGTAACAACACC--ATTAGTT-------ATATTAACTTCT------CCAAATCC--ACTCACTGTAAAGATCGGCCATGTCCTCTTGATTGGTGGTATAGTTCATGAGACTCTGAATGAGCATGATGTAACGCGGGATTCTCTGAATTGGCATGATGAGGTAAGCTTGGAGCTTCTTTCCTTCCACTCGGGGATCTTCCTCGATTTTGGTGAGGGTTTTACGGAAGTCACTGTTTGACatcagcttctgaaaa---aacacatGAGGTGAAAACATTTATAATGAGGTATT
i caePb3.Scfld02_0      I 203 I 27
s caeJap4.Scaffold18142  102694 398 +   343467 ----------TGTACATCATTCCTTCTCTCAGAAGTACACGCCCGGGCTCCAGAATGTGTCCGTCGAGGCCGAAATTCAGCTGGATTGTTAGAAGTCGTTCACCATTCTCGAACGCCGTCATGCAGGATTGGATTTGATCGGAAAGTCCTTGCATACCGTGTAGTGTCtcta--aaaaatgcattttggttttaaaaaatccccTA-TTT------CCAGCTAAAAACTCACTGAAAAGATTGGTGATATCCTCTTGCTTTGTACTAAAGTGCATGAGATTTTGTATTAATAGAATGTAGCGAGGAATCCGTTGAACGGGCATGATTAGATacgtttgcaattttttcccttCACACCTTGGGTCTTCCTCAATTTGAGTAAGGGCTTTTCGAAAGTCGTTGCGAGCCATCAACTTG--------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3677747 6 + 17718866 GTTATA
e caePb3.Scfld02_0      2061647 27 +  4147112 I
e caeJap4.Scaffold18142  103092 0 +   343467 C
e cb4.chrX              8807120 432 + 21540570 I
e caeSp111.Scaffold630  5789802 27 + 20921866 I
e caeRem4.Crem_Contig0   790219 6 -  4500979 I

a score=171379.000000
s ce10.chrX             3677753 228 + 17718866 ACTAACCGCAAAAATTTTCAGCGAATTTGGATAATGGGATGCATAACTGGTATAGAGTTTGAGGAACGGTACAAATTTGGTAAAGACCTCGGCGATCGGCTTGCACTGAAGGGATTCCAGAAGGATTTGATGAGTCTTGCAGATTGCTGATATCTCGCCGAACATGGATCGGAAGCATTTTTTTGATTTGGGGCACCACAAGTTAAGTTGTTGAATGAATATCTGGAA
s cb4.chrX              8807552 228 + 21540570 ACTCACAGCGTGGACTTTCAGCGCATTTGGATAGTGTGATGCGTAGCTGGTGTACAACTTGAGAAAAGGCATAAATTTCGAGAAGACCTCGGCAATTGGCTTGGTGCGAAGGTGTTCCAAAAGGATTTGGTGTGTCTTGCCGATGGCCGATATCTCTCCGAACATGGCGCGAAAGCATTTTCGAGATTTGGGACACATCACGTCGAGTTGGCtgatgaaaatctgaaa
i cb4.chrX              I 432 I 47
s caeRem4.Crem_Contig0   790225 227 -  4500979 ACTTACGGCATGAATCTTCAAAGCATTTGGGTAATGAGTCGCGTAGCTCGTGTACAATTTGAGAAAAGGGACAAATTTGGTGAAGACATCGGCGATTGGCTTGGTGCGAAGCGATTCCAAGAGTATTTGGTGGGTCTTGCAAATGGCTGATATCTCACCGAACAGGGAACGGAAGCATTTCCTTGATTTGGGACACCACAAGTTGAGTTGTTGaatgaatatctgaa-
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5789829 228 + 20921866 ACTCACCGCGTAAACCTTTAATGCATCTTCATAATGAGATGCGTAACTGGTGTATAGTTTGAGAAACGGCAGGAACTTGGTGAATACTTCGGCTATCGGTTTGGTACGGAGAGATTCGAAAAGTATCTGATGGGTCTTGCAAATGGCCGATATTTCTCCGAACATGGCACGGAAACATTTTCTGGATTTGGGACACCACAGGTTGAGTTGATTGATGtataactgaaa
i caeSp111.Scaffold630  I 27 C 0
s caePb3.Scfld02_0      2061674 228 +  4147112 ACTCACAGCGTAGATTTTCAATCCATTTGCATAATGAGACGCGTAGCTAGTGTACAACTTGAGGAATGGAATGAACTTGGTGAACACTTCTGCGATTGGCTTGCTGCGCAAAGACTCGAGGAGTATCTCATGGGTCTTGCCAATGGCAGATATCTCTCCGAACATTGAACGAGAGAGTTTCTGAGTCTTCGGGCAACGCAATGCGAGTTCATTGACGAATATCTGGAA
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold18142  103092 221 +   343467 -------GCGTAAATCTTGAGAGCACGTGGGTAATGTGAGGCATAACTTGTGTAGAGCTTGAGAAAAGGAAGGAACTTCATGAACACCTCTTCGATCGGTTTGCTTCGAAGTGACTCTAGCAGTATTTGATGCGTTTTGCAGATGGCTGAGATTTCTCCGAACATTGATCGGAAGCATTTTTTGGATTTAGGGCAAGCCAGGGAGAGTTGCGGAATAAAGAtctgcaa
i caeJap4.Scaffold18142 C 0 C 0

a score=910.000000
s ce10.chrX             3677981 1 + 17718866 A
s caeRem4.Crem_Contig0   790452 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5790057 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2061902 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 1267
s caeJap4.Scaffold18142  103313 1 +   343467 a
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8807780 47 + 21540570 I

a score=-9000.000000
s ce10.chrX             3677982 77 + 17718866 AAAAGATTTTAAGAAGCTTTTAGAAGTTTTTGAGATACTTATGGCTATCAATTTAATAGATGCGTTTTATAAATCAC
s caeRem4.Crem_Contig0   790453 25 -  4500979 -----att------aaattttaaaaact---------------------caaatcaT--------------------
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5790058 17 + 20921866 -------------------ttagaaggT---------------------AATGTAAT--------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  103314 13 +   343467 ----------------------gaaaaa---------------------aattgaa---------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2061903 1267 +  4147112 I
e cb4.chrX              8807780 47 + 21540570 I

a score=-13978.000000
s ce10.chrX             3678059 231 + 17718866 GGTTCTCGGTAAGTCGTACCTGACAAATTTTTGTCATAGATTTTTCAGGTACCTCGGTTGCAAGTGTTCGAGCATCATTTCATGAGAATATCAAAAAGCGCAAACGCATGATTCCAAAAGCAACCGGCAATAGCAGCGAAACGCCAAAATTTTTGGTAACCGGCTACTGTCGGCTGCCAAACCGAATGTTACAAATTTCGGCAATTTTTAGGCAACCGGCATTCTGGTTTA
s caeSp111.Scaffold630  5790075  21 + 20921866 --------------------------------------------------------------------------TTATT-----------------------------------------------------------AAACGCAGAAATGTTT-----------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  103327  19 +   343467 --------------------------------------------------acttctCTT---------------CTAAT------------------------------------------------------------------AAAAT---------------------------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2061903 1267 +  4147112 I
e cb4.chrX              8807780  47 + 21540570 I
e caeRem4.Crem_Contig0   790478  15 -  4500979 I

a score=-15.000000
s ce10.chrX             3678290 15 + 17718866 TATAATTAAATCCTG
s caeJap4.Scaffold18142  103346  7 +   343467 --------AATACTC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2061903 1267 +  4147112 I
e cb4.chrX              8807780 47 + 21540570 I
e caeSp111.Scaffold630  5790096  0 + 20921866 C
e caeRem4.Crem_Contig0   790478 15 -  4500979 I

a score=81902.000000
s ce10.chrX             3678305 113 + 17718866 ACCTCATCGACGATAGTGAGCGCTTTCACATAGGTTCTCTCGGTATCATAAATTTCTTGTAAAATCTGGATTTTCTCTGTCGGCTGATTAGCATACAGTGTACTCATGTCAAA
s cb4.chrX              8807827 113 + 21540570 ACCTCATCAACAATGGTCAACGACGTGACATAGGCACGCTCGGTGTCGTAAATCTCTTGAAGGATGTTGATTTTCTCTTGCGGCTCATTTGCATACATCCTCGCCATGTTGAA
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   790493 113 -  4500979 ACCTCATCAACAACAGTCAGCGCCTTGACATAAGTTCTCTCTGTATCGTAAATCTCTTGAAGAATGTTGATTTTCTCCTGCGGCTCATTAgcatatttctttttcatatcgaa
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5790096 113 + 20921866 ACCTCATCAACTATTGTGAGCGATTTCACATAAGTTTTTTCCGTGTTGTAAATCTCTTGTAAAATgtttatcttttcttttggcTCATGTTCATAGAGAGTTTCCATGTTGAA
i caeSp111.Scaffold630  C 0 I 50
s caePb3.Scfld02_0      2063170 113 +  4147112 accTCATCAACAAGAGTGAGCGCCTTGACATAGGTCTTCTCGGTGTCGTAAATCTCTTGAAGAATTCGGATCTTCTCGATTGGCTCATTTGCATATTGCGACGACATGTTGAA
i caePb3.Scfld02_0      I 1267 I 2
s caeJap4.Scaffold18142  103353 113 +   343467 ACCTCATTGATAACTGTTAGGGACATCACATAAGTTCGTTCGGTGTCATAAATTTCTTGTAAAATCTGGATTTTCTCATTGGGTGCAGTTGTGTACAAGCTTTTCATATCGAA
i caeJap4.Scaffold18142 C 0 C 0

a score=1669.000000
s ce10.chrX             3678418 41 + 17718866 TGGCAAATAGCTGTTCATCTTATGTGTGAAATAATCAGTAT
s cb4.chrX              8807940 37 + 21540570 TTTCGCGAAACTGTCCAATTTCAATTGGAGATAGTCG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   790606 41 -  4500979 CGATGTATATGTGTTCATTTTGATGGTAAGATAATCATCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2063285 35 +  4147112 --CGGTGaaagtattcattttttgagacaaGTAGTCG----
i caePb3.Scfld02_0      I 2 I 4
s caeJap4.Scaffold18142  103466 40 +   343467 CTTCACAAAACTCTTCTTCTTAATACTAAAGTAGTCATCA-
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5790209 50 + 20921866 I

a score=-24455.000000
s ce10.chrX             3678459 193 + 17718866 -TTTCATCGGGAGCCTTTTGCAAACTGCCTTGCGACGAGTCA------CTTTGGTACGTGTAGTAGTTGAATTCTTTGCCCGCGTTCA--TAGTCTGAAAAAC------AACAGAGTTAGAT-GAAAGGAAACATTTGATTTTAAATCGAAAAAAAAAGACATTGA-TAATGAAGAGAACTACCCGG--TAAACAAGACTCTGCAAACAGAA
s cb4.chrX              8807977 128 + 21540570 ----------GTTTCCACG----------------------------------ATTGGAA-ATGGTTTGGGCAGCGTGCTCGCATGCa--tcacctgaaaaaaaaaacgaagaaaat--aat-gggagagaaa-----------------gaggaagagaaaaaac-tacTG------CCTGAGCAG--TG--------TCAGtaaacagaa
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0   790647 154 -  4500979 -AATCATCTTGTTCCCTCGGCAAACTACGTTCCGTTCCATCC------ATTTTATTagcataaaatttgaattctttgCCGGCATTCA--TGGCCTGTAATaa-----gaggaaa----aat-gagtttaaat-----------------AAGGAAAGTCAACCAG-CGATG-----------GCAG--TA--------tcaataaacagaa
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5790259 155 + 20921866 --tttcttctggTGCCGTATCGGACGAT-----GTCGAATCA------CTGTTGTACGTGTAGTAATCGAACTCCGTGCCGGCGTTCATTTTgtctgaagaga------aagaagat--aac-gaaacggaaaat--------------gaaggaaatgaGCGTATCGATCA-----------GCAG--TA--------ATAGTAAacagga
i caeSp111.Scaffold630  I 50 C 0
s caePb3.Scfld02_0      2063324 148 +  4147112 -GTCCGTCCTGAGTCCTCGGCAAACTATCGCAAGTAGAATCA------CTTTTAGGACTATGATTGTTGAGCTTCCGGTCGGCGAACA--ACatctaaaaatc------gaaatagT--AAT---AAcggaga-----------------gagaaaatg--------gaatg-----------gcAGAATA--------CGAGTaaacagaa
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142  103506 146 +   343467 GGCGGGTTTTGGTGCATTG---------CTCCTGCTGAACGGGGTGGTCTTTCGTACGTAATGTAATCGAATTCTTTGCATGCtttca--ttttctgaaataa------aacaaact--aattttaattaaat-----------------aaataaatgtaaaCAT-GTGTG-----------------AA--------AGAGCAAAT----
i caeJap4.Scaffold18142 C 0 C 0

a score=-9003.000000
s ce10.chrX             3678652 49 + 17718866 CACGGGATAAAGAGGG------ATAAAAATC----AATAGATTGAGTAGAACGGCCGGC
s caeRem4.Crem_Contig0   790809 44 -  4500979 -cgcCAGggcagaaaa------atagaaaga----gaaatgaagagaacgGAAGC----
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5790414 42 + 20921866 --ggagagagagagga------acagaaaa-----gaggaaaagagaacgaCAGC----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2063472 53 +  4147112 --ggaaaatgaaCGAACGTTCGACAGAAAGAGAACGAGGAAATGAGGAGACCTGC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  103652 19 +   343467 --------------------------------CATGAGAAAAGGA----AGCAGC----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8808105 40 + 21540570 I

a score=-12277.000000
s ce10.chrX             3678701 77 + 17718866 AGGTGTTC----------TCCCAAACGA-------CCGCC---------------ACAACACCATC---GCATTC-AAATTCGCGGTGGCATCAGA-GGAGCGCGTTTGCA----------CAC
s cb4.chrX              8808145 99 + 21540570 AGGTGTATTGAGGAACGCACACAAAAACAACACTGTCGTCCgggggggAG---TGGAGGCCCCGTTCTCTTATTC-AAATTGGCGGAGTGT-CAAC-GGAGCGCG-------------------
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   790853 85 -  4500979 AGGTGTTTTG---------CACAAACAC-------CCATC---------------AAGgccctttt------ttc-aaattcgcgGAGTGTCCCGt-cgagcgcgtttgcataatCCTCCCCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5790456 89 + 20921866 AGGTGTTT---------------------------TTCTTCGTGTGTGTGCCAGCTCGGCCC--TT----TATTT-AAATTCGCGGTGTATCCCAT-AGAGCGCGTTTGTGTGTCCCTCCTCCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2063525 80 +  4147112 Aggtgttt---------------------------ttgtt-gtttgtgtg---GCTAGACCCCTCT----TATTCAAAACTCCCGGCGT-TCGCATAAGAGCGCGTTTGCG--------CACAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  103671 73 +   343467 CGGTGTTG---------------------------TTTAT--------GGTGAGCCAAACAACACC----AATTC-AATTTCGCGGCCGTTACGGA-GGAGCGCGTATGCA----------CAC
i caeJap4.Scaffold18142 C 0 I 2428

a score=-14081.000000
s ce10.chrX             3678778 330 + 17718866 TC------ATCGCTATA--------------GTGGGGGTTGGCCATGCATGTCC---------------ACATGATGCAAG-GAAAAATGAGAAGA----GTGAAGA-AGGGGTGGGGGGGGGGGGGGCACTATGTGAGAACACGGAGGACAAGGACGTTTTTGCGCAAGACA-----AATGATCAAATGCCGTGCTGTATGTTGT------------------------TGGTAGATGCTAC---------GTCATCTG----------GGAGTAGCAGAGTAGAAGGAAGAGATGCGTTTGTTGGGCAGTATCTAGA---TCA---------ACAGGAAATGATAAATCAGTAGTGAAAATTTGGAGTCTTTAAAAACTGG--AGTCAGATGATTTGATATGATAGGAAG--AGCACATGGTCTCGAATTTC-C
s cb4.chrX              8808244 336 + 21540570 --------ATTGCTACC--------------GTTTGGGAGGGCCTCGCGCGTCCTT-------------ACTGTCTGTGCGCACACAAGAGGTAAACCGTGTAATGG-GAGGCCGGAAAAAACAGGAG-----------------GCACGCAAGGACATT-TTGCGTAAGACGGGGTTGATGATCGAATGT---CATGTAAGAAGA-ACGAAGATTGTGTACAGAAAGGGAAGGCAATGACAC-ACATTATCGCCATCGGGatgagatgaagaagatgggGGAGGAAAAGATATGCATAGTAT------------TAAAGGAACg---------acagaaaatgaagaattg------------gAGAGTCTTGAAAATATAT---GTCAGCTGATacggaac-aaaaaaag--agcacAT-GTCTTAAATTTCC-
i cb4.chrX              C 0 I 23985
s caeRem4.Crem_Contig0   790938 324 -  4500979 TCTCTGTCATTGCCACAAGGATCGATTTTTGGTTAGGGTGGGCCCTGTGTGTCCTC-------------CTCGTGTGCGCG-Gcagaggaggagaa----aaaatgt-gCG--CAGAGGAGACGGGG----------------------ACAAGGACACT-TTGCGTAAGAAG-----GATGACCGAATGT---CGTGTATGTACAGAGGAAGAATAT--------AAAGAAAGCAATGACAC-ACATTATCGTCATCTG-----------------------GGAAAAGAGATGCGTAGCATTTACTCAACCTCTATAGTATTG---------ACAGGAAATGATGAATTGGTTGTGAAT---GAggttcttcaaaaattgt--agtCAGCTGAT---------AGCAAAG--AGCACAT-GTCTCAAATTTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5790545 323 + 20921866 TCTCTCACTTGCCCCAAATCAATAATC----TTGTGGGCTGGCCGCGCGCGTCCTTCAT----------CTTCTATCTATGCGCAAACGAGGAAGA----GTAAAGAGGAGGGGAAGGATGACGATAG----------------TGAAGGCAAGGACGTTGTTGCG--AGATG-----GATGACCAAAT-----CCTATACGTTAT------GGCTATTTACA-------AGAGCAGTGACGTAACCTCATCGTCATCT-------------------------GCCAGAGAAGGTGCTGCCGTATAGGACTA--TATAATCATA----TTGTAATGAGAAATAAT--ATAACAGa--------aagaattttggaaatgtaA----TCAGCtgatagag-----agaaaga--agcaCATGGTCACAAAATGC--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2063605 348 +  4147112 TGGTTGACCTCTCCAGAAAGGA-----------GGGAGACGGACGAAGGC--CATCTATGCGCGTCTTCCTTCATTATCTGCGCAGACGGGGAA--------------GAGGGGaaggaagagaggaa----------------gagacaCAAGGTCGTCTCTGCGTAAGATA-----AATGACCGAATGC-GGTCTGTACGTTCT------GGTTATGTACA-------GGAGCAATGACGTAACCTAATCGTCAtctg-------ggaaaaaga-------agaaagggaatGCGTATCCTTTTGTGGGT---TACTGTCCTAGTTTTTACAACAGGAAATGATGAATTGTAGATAAATG--AAGGactaagaaaataaaacaagtcAGCTGATATGA-----AAGAAGAGCAGCACAAGGTCTTGAATTTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  103744 2428 +   343467 I

a score=5803.000000
s ce10.chrX             3679108 40 + 17718866 CGACAATCACATGAGTGGAG-TGGAAAATGG------AATATTATCA---
s caeRem4.Crem_Contig0   791262 50 -  4500979 CAACAGTCATATGATTGTCAGCGTTGAAATGAGTGGAAAAATTATCATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5790868 40 + 20921866 CGACAGTCATACGTTTGTCA-CGTTAAAATG------ACAATTATCA---
i caeSp111.Scaffold630  C 0 I 826
s caePb3.Scfld02_0      2063953 40 +  4147112 CAACACTCACATGTTTGTAT-TGATGAGTAG------AAAATTATCA---
i caePb3.Scfld02_0      C 0 I 980
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I

a score=1067.000000
s ce10.chrX             3679148 79 + 17718866 GATGCTGG------CGTTTCA-AACAAGAGGACTG---TACAAAACGTAGAAACTAGTGTGAACAAAGACCATTGT-------ACAACAAATAAAA
s caeRem4.Crem_Contig0   791312 88 -  4500979 GTTGCCCGAGTACTCGTTGTACAACAAAAGTGCGGGACTATAGAACACCGAA--------GAACAAAGACCGATGTTAGAacaataataaataaaa
i caeRem4.Crem_Contig0  C 0 I 4132
e caePb3.Scfld02_0      2063993 980 +  4147112 I
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I
e caeSp111.Scaffold630  5790908 826 + 20921866 I

a score=0.000000
s ce10.chrX             3679227 1304 + 17718866  
e caePb3.Scfld02_0      2063993  980 +  4147112 I
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I
e caeSp111.Scaffold630  5790908  826 + 20921866 I
e caeRem4.Crem_Contig0   791400 4132 -  4500979 I

a score=137.000000
s ce10.chrX             3680531 5 + 17718866 TCGCT
s caeRem4.Crem_Contig0   795532 5 -  4500979 TCTTT
i caeRem4.Crem_Contig0  I 4132 C 0
e caePb3.Scfld02_0      2063993 980 +  4147112 I
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I
e caeSp111.Scaffold630  5790908 826 + 20921866 I

a score=749.000000
s ce10.chrX             3680536 6 + 17718866 TAACAT
s caeRem4.Crem_Contig0   795537 6 -  4500979 TAACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5791734 6 + 20921866 TGGCAA
i caeSp111.Scaffold630  I 826 C 0
e caePb3.Scfld02_0      2063993 980 +  4147112 I
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I

a score=620.000000
s ce10.chrX             3680542 4 + 17718866 TGTC
s caeRem4.Crem_Contig0   795543 4 -  4500979 CTTC
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5791740 4 + 20921866 TATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2064973 4 +  4147112 TGTT
i caePb3.Scfld02_0      I 980 C 0
e caeJap4.Scaffold18142  103744 2428 +   343467 I
e cb4.chrX              8808580 23985 + 21540570 I

a score=9329.000000
s ce10.chrX             3680546 22 + 17718866 GGCTAGTGCCAATGCAGTAT-TC
s cb4.chrX              8832565 23 + 21540570 GGCCGGTGCCAATGTATTCCTTT
i cb4.chrX              I 23985 C 0
s caeRem4.Crem_Contig0   795552 22 -  4500979 TGCCTGTGCCAATGTATTTC-TC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5791744 22 + 20921866 GGCCAGTACCAATGTATACT-TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2064977 22 +  4147112 GACTAGTGCCAATGCTTTCT-TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  103744 2428 +   343467 I

a score=130890.000000
s ce10.chrX             3680568 293 + 17718866 CACCGTTCGACTT-TATTTGTTCACAA-------CGAAGAGATGATGCATAGTATGAGGTCAAGAATTTGTTTGCCAGGT-----AAATGCTCTCC-TGTCTCTTCCTCTTTCTCTCCGG-----------TCTACTCGTTTGCGT----GTGC---------------------TGCGTGGC-TCGTTGAATGGTCAGC--TGTGATTTCAATTTATCAGTTGGCAACGCGGTCC-GCC------------AGAGTTTCAAACGG-CAAATAGATTCTTT------------AATCGCTGCGTGTGGCCGCCGAGTT-ATCTTGCTTCTTCC------G--GAAAGTTTAAAGTT-------TGATCGCTTCATTCACTAACGAAAT
s cb4.chrX              8832588 328 + 21540570 TTCCGTTCAACTC-TGTTTGTTCACAC-------AAGAGAGATGATGCATAGTAAGAGGTCAAGAAATTGTTTGCCAGGT-----AGATGCTCTAC----CTCTTCCCATCTTCCCCTCGTTTCTACTCTTTTTGCGTGTCTGCGG----GTGCATCTTTCTTTTGGTTGGTGTATGTGTGGC------GAATGGTCAGCTGTGTGAtttcaatttatcagttggcaacg----gCTTgcggagagagagaaagagtttCAAACGG-CAATTGGACTCTTT------------A-----------TTGCTTCCGTGCC---TGGGCGGCATCCAGCGAGa--cacaatttgaaatttccatcgCCACCGTTTGATTTATCCAACAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   795574 279 -  4500979 TTCCGTTCAACTT-TGTTTGTTCACacaagaaagaagagagatgatGCATAGTGAGAGGTCAAGAAATTGTTTGCCAGGTAG---AGATGCTCTCC----CTTTTCTCCCTTTCTACTCG-----------TTTGCGTGTATGCAA----GTG----------------------TGTGTGGC-ACATTGAATGGTCAGC--TGTGATTTCAATTTATCAGTTGGCAACGCGGTGCCCGC------------AGAGTTTCAAACGG-CTATTGGACTCTTT------------A-----------TTGCCGCCGTGTC---------GTTTCC------G--CACAGTTTAAAGTTTCT----TCGTCGCTTGATTTATCCGTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5791766 278 + 20921866 TAGCGTTCCTCCG-TGTTTGTTCACC--------AAGAGAGATGATGCATAGTGAGAGGTCAAGAAATTGTTTGCCAGGT-----AAATgctctct-tctcctcttcctctttcaacTC-------------ATGCGTGTGCAAGA----GTG----------------------TATGTGGCAACGTTGAATGGTCAGC--TGtgatttcaatttatcaGTTGGCAGTGCGGTGT-CGCGA----------AGATTTTCAAACGG-CAATTGGACTCTTT------------A-----------TTGCCGCCGTGTT---------GCTTCC------GGAGACAGTTTAAAGTTTCT----CCATTGCTTGATTTATCCACGACCT
i caeSp111.Scaffold630  C 0 I 117
s caePb3.Scfld02_0      2064999 284 +  4147112 AACCGTTCCACTT-TATTTGTTCACCA-------AAGAGAGATGATGCATAGTGAGAGGTCAAGAATTTGTTTGCCAGGT-----AGAtgctctctctttctttctttcctttctaCTCG---------TTTACGCGTGTATgagagtgtgtg----------------------tgtgtggcaACGTTGAATGGTCAGC--TGTGATTTCAATTTATCAGTT----GTGCGGTGC-CGAGAGC--------AGACTTTCAAACGG-CAATTGGACTCTTT------------A-----------TTGCCGCCGGGTT---------GCTTCC------G--GACAGTTTAAAGTTTCT----TCTTCGCTTGATTTATCCGCAGAAT
i caePb3.Scfld02_0      C 0 I 118
s caeJap4.Scaffold18142  106172 282 +   343467 CGCCATTCAAGTTATGTTTGTTTAGGAC------GCGAGAGATGATGCATAG--AGAGGTCAGGAAAGTGTTTGCCAGGTAGGACGGATGCTCTAC------------------------------------TCGCGTGTGCA-------ATC----------------------TGTCTTTC--TTTCTCTTGGTCAGT--TGTGACTTCAAATTATCAGTTGGCTGTGCGGTCC-GTCTG----------AGTGTTTCAAATTGCCAATTGGACTCGTTTCTCTCAATTCGA-----------GTGCCGCCTTGGTTGCCCGGCTTCTTCCGGTGGGA--CACAGTTTAATGTTTTA----TTGCC-CTTTATTTATCCTGGAAAT
i caeJap4.Scaffold18142 I 2428 C 0

a score=-155.000000
s ce10.chrX             3680861 1 + 17718866 T
s cb4.chrX              8832916 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142  106454 1 +   343467 T
i caeJap4.Scaffold18142 C 0 I 643
e caePb3.Scfld02_0      2065283 118 +  4147112 I
e caeSp111.Scaffold630  5792044 117 + 20921866 I
e caeRem4.Crem_Contig0   795853 0 -  4500979 C

a score=1080.000000
s ce10.chrX             3680862 28 + 17718866 CTAAAATACTCAAATC---TT-------ATTTTTGCAC
s cb4.chrX              8832917 28 + 21540570 GAAATATGTTTTGGTC---TT-------TTATTTGCAC
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   795853 37 -  4500979 -AAATATGTTTCTGTCAAATTCAGAGAGTTATTTGCAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2065283 118 +  4147112 I
e caeJap4.Scaffold18142  106455 643 +   343467 I
e caeSp111.Scaffold630  5792044 117 + 20921866 I

a score=-321.000000
s ce10.chrX             3680890 47 + 17718866 CTGAGGAGAAAATGAATTATTTATGGCGCT-----------TTCTTGCTAAAAATTTA
s caeRem4.Crem_Contig0   795890 52 -  4500979 T------GAGAATCGATTGATTTTGTTGGTGCAGATAGTTGTCCTTGTAGACAAGTCA
i caeRem4.Crem_Contig0  C 0 I 165
e caePb3.Scfld02_0      2065283 118 +  4147112 I
e caeJap4.Scaffold18142  106455 643 +   343467 I
e cb4.chrX              8832945 48 + 21540570 I
e caeSp111.Scaffold630  5792044 117 + 20921866 I

a score=0.000000
s ce10.chrX             3680937 29 + 17718866 ACAAAATGCATTATTCTATATGTAGAATG
e caePb3.Scfld02_0      2065283 118 +  4147112 I
e caeJap4.Scaffold18142  106455 643 +   343467 I
e cb4.chrX              8832945 48 + 21540570 I
e caeSp111.Scaffold630  5792044 117 + 20921866 I
e caeRem4.Crem_Contig0   795942 165 -  4500979 I

a score=160.000000
s ce10.chrX             3680966 3 + 17718866 TCA
s caeSp111.Scaffold630  5792161 3 + 20921866 CCA
i caeSp111.Scaffold630  I 117 C 0
e caePb3.Scfld02_0      2065283 118 +  4147112 I
e caeJap4.Scaffold18142  106455 643 +   343467 I
e cb4.chrX              8832945 48 + 21540570 I
e caeRem4.Crem_Contig0   795942 165 -  4500979 I

a score=263.000000
s ce10.chrX             3680969 14 + 17718866 -TAATTTTGGTTCTT
s caeSp111.Scaffold630  5792164 14 + 20921866 -TACTTTCGAATTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065401 13 +  4147112 TTAATTT--GATTCA
i caePb3.Scfld02_0      I 118 C 0
e caeJap4.Scaffold18142  106455 643 +   343467 I
e cb4.chrX              8832945 48 + 21540570 I
e caeRem4.Crem_Contig0   795942 165 -  4500979 I

a score=-6345.000000
s ce10.chrX             3680983 63 + 17718866 CAGATTTTCCTGCT--------TATGTTTACTTTCTTTTCACGTC---TCGTATCTCTTACTATTTTCTCTGGG
s cb4.chrX              8832993 48 + 21540570 CAGATTGTCTCACTGTCTG---TGCACTCTTTATCTCTACAATTCTATTCG-----------------------
i cb4.chrX              I 48 C 0
s caeSp111.Scaffold630  5792178 71 + 20921866 --CACTCTCTTACTATTTCATTTGCTccaatcttttttgaaatctcttcCAAAATCACAATATTTCTACTTAA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065414 67 +  4147112 --CACATTCTCCGTCTCTc----gctctttttctgtttttactTTCGATCATATCCACAACTCGTGATTTTGG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  106455 643 +   343467 I
e caeRem4.Crem_Contig0   795942 165 -  4500979 I

a score=-25912.000000
s ce10.chrX             3681046  90 + 17718866 ------ACAGTTAGATGCAT--------TTT-------------TTGAATAT----------TCTGATATT-----------------------------TAACACCTTTTT----------GTTC-------TTTTGAAGCGTAATTTCTTATT--------CTTTTTTAACCTTACATT
s cb4.chrX              8833041 116 + 21540570 AAAACAAAACTATTTTCCCT------ATTGC-------------TCAGTTGTATAAAA----TTTCGTGTT-------------GAGGACTTGtgaatcat-----catttt--------caattattttttgtctcga--------ttttcatt--------ttaagtgagtttaaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796107  98 -  4500979 ------ACATCGTGATTCAt------cgttt-------------tcaattat----------ttttctgat-------------aggaatattcgaatttttctcacTTATC--------CAGTTA-----------aa--------ccttcttt--------ttcattcaattaaaaaaa
i caeRem4.Crem_Contig0  I 165 C 0
s caeSp111.Scaffold630  5792249  97 + 20921866 ------AACTTGTGATTCATTGAATcctttg-------------tctttttt-----gaggttttcgaggt-----------------------------tcacaccacctt--------cagctt-------tctcgg--------ttttttct--------attttctaattttacagt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065481 160 +  4147112 ------TGTACGTGTTTCATATAGatatttgagtgaaaaatgaatcaccTCTACGAAAAGTTTAtcgtaatattttttcaaaaaaagtgcgTGATGAACATTAcacattcttttttgtgaCAGCTT-------CTTCAA--------TCATTCTTCAATGAAAACCGTTTCGTTATAAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  106455 643 +   343467 I

a score=41297.000000
s ce10.chrX             3681136 128 + 17718866 TTACTGAAAAATAATTTCAGGCAG--------------------------TGCATGGCAACAGAACGTGATGGCGGTGGCTGCCTTCGGGTAGCTGTTTCAATTTTCTCAATATACTATTGGGTTTGT----------G------CCTGAACATGTTAAGTA-----ATTTTTTA
s cb4.chrX              8833157 146 + 21540570 tc---------t-atttcagATAGAATTGCTCACAAGCACTGT-------CGTATGGCAACAGAGCGAGATGGTGGGAACTGCCTGCGGGTAGCAGTTTCTATCTTCTCCATATACTACTGGGTGAGT-----AAACAACCTTTTTATTTCCAGATTGAT-------AACCGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796205 146 -  4500979 t-------------tttcaaactcacatattttcagatatcgtCAGATCACGTATGGCAACAGAGCGAGACGGTGGAGGCTGCCTCCGAGTGGCAGTTTCTATCTTCTCGATATATTACTGGGTGAGT-----CGGAAG------TATTTTAGAAATAgtta-----aactttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792346 129 + 20921866 tt---------ttattttaggtAT--------------------------TGTATGGCAACAGAGCGAGATGGTGGAGGCTGCCTACGGGTAgctgtttcaattttttcaatatattaTTGGGTATGCTATGACAATAG------GAATCAGatagtagaaa-----aaaattta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065641 134 +  4147112 TT---------TGGTTTCAGATCT--------------------------CGTATGGCAACAGAGCGAGATGGTGGGAACTGCCTGCGGGTAGCTGTTTCCATCTTCTCGATCTATTACTGGGtatgttttttaaaagt------tattTTTATAGTGGATAATATTAACATTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107098 126 +   343467 --------------TTCCTGAAGAAGTTTCCCGATTGT------------TGGATGGCTACTGAAAAGGATGGCGGCGGATGCCTACGGGTGGCCGTCTCAACTTTTTCGGTTTATTACTGGGTGAGC-----CAATAA-------------AAGTTATCTG-----AATTGTTA
i caeJap4.Scaffold18142 I 643 I 17

a score=-4183.000000
s ce10.chrX             3681264 6 + 17718866 ACTTTC--
s cb4.chrX              8833303 3 + 21540570 TTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796351 8 -  4500979 tttttcac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792475 2 + 20921866 at------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065775 2 +  4147112 GT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  107224 17 +   343467 I

a score=101095.000000
s ce10.chrX             3681270 114 + 17718866 TTTCAGCTTTCTGCTCTCGGTCACGTGTTTCTTGGACTATGGATGCTTCTCGACCCGAAACGAAACTACATCTTGGATTTGGTACACTTTTCGGAAAATGATCCGTTATTGGTA
s cb4.chrX              8833306 113 + 21540570 TATCAGATATCTGCCCTTGCTCACGTTTTCCTTGGATTATGGATGTTATTGGATCCCAAACGGAACTATATTTTGGACTTGGTGCACTTTTCCGAAAATGACCCACTGCTGGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796359 114 -  4500979 tttcagttATCTGCTCTCGGACATGTCTTCCTTGGTCTATGGATGCTTCTGGACCCAAAAAGAAACTACATCTTAGATCTTGTACACTTCTCAGAAAATGACCCTCTTTTGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792477 114 + 20921866 cttCAGGTATCTGCTCTAGCTCATGTTTTTCTTGGATTATGGATGCTACTGGACCCAAAACGCAACTACATTTTGGATCTGgtacatttttcagaaaatgatccTCTattggtg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065777 113 +  4147112 -TTCAGTTGTCTGCTCTTGGACATGTTTTCATTGGATTATGGATGCTTTTGGACCCGAAACGAAACTATATTCTGGACTTGGTACATTTTTCCGAGAATGATCCCCTTTTGGtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107241 114 +   343467 TTTCAGTTATCAGCTCTCGGCCACATTTTCATCGGACTTTGGATGCTCCTCGACCCAAAACGCAATTACATTCTAGACTTGGTTCATTTCTCGGAGAACGATCCGTTGCTGgtg
i caeJap4.Scaffold18142 I 17 C 0

a score=-9158.000000
s ce10.chrX             3681384 39 + 17718866 CGTGTTTTTCATAAATTTT----GTAGATATTTAGAGTTTAAT
s cb4.chrX              8833419 14 + 21540570 --------------------------gagatttagaaaat---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5792591  9 + 20921866 -------------------------agttttttt---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065890 15 +  4147112 -------------------------agtattttgaaacat---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107355 33 +   343467 ----------attattttttccaatagttttctaatattcaat
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   796473  0 -  4500979 C

a score=-13077.000000
s ce10.chrX             3681423 95 + 17718866 CTTTTTAGAGTTGATTTAGAGTTGAATAATTTCCAATTCTTGCCATAAAAATTTCCAGCCACAAAAATTTAATTTCAGCAAAATTTTAGCACTAT----------------------
s cb4.chrX              8833433 11 + 21540570 -------------------------------ttcag----------------------------aagtat-----------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5792600 13 + 20921866 -------------------------------ctcaa----------------------------aaattcaa---------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2065905 89 +  4147112 ---------------------tcaaggAATATTCAA------CTgtaaaaattgtaaatt-tgtAAATTCAATGTTTGAAGAACCTTCCGTTTATTCAACAGGCAGAAGATTCTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  107388  0 +   343467 C
e caeRem4.Crem_Contig0   796473  0 -  4500979 C

a score=33.000000
s ce10.chrX             3681518 10 + 17718866 AGTTTTTGAA
s caePb3.Scfld02_0      2065994 10 +  4147112 AATCTAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  107388  0 +   343467 C
e cb4.chrX              8833444  0 + 21540570 C
e caeSp111.Scaffold630  5792613  0 + 20921866 C
e caeRem4.Crem_Contig0   796473  0 -  4500979 C

a score=-14921.000000
s ce10.chrX             3681528 122 + 17718866 AATTAGAAAATAACTTTTTACACAAAATTCCTACAAAAGAAAACAGGTGTACTTTACA-------GATAAAATGAAATGAATAAAACATTTTTTGAATTGAGTAAGCtattttatttttaatttttttt-
s caeRem4.Crem_Contig0   796473  28 -  4500979 -------------------------------------------------AATT------------GGTTTTATGA------TAAAATT-------------------------------ACGTTG----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792613  30 + 20921866 ------------------------------------aagaaaaat--taaact-------------------tga-------aaaaca-------------------------------aatttg-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066004  75 +  4147112 -----------------CTCCAGAAAGATCCACTATAAGAGAATC--AGAATTttacaagtttttgatttaatga-------aaaata----------------------------tgtaacTTGTCTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  107388   0 +   343467 C
e cb4.chrX              8833444   0 + 21540570 C

a score=-18823.000000
s ce10.chrX             3681650 69 + 17718866 tttGAGTTTAGAACTGTTTAAATAATGACTATTTCTTGTAAATCGTCAAAAA----ATTTTTGAAACGTATTA----
s cb4.chrX              8833444 14 + 21540570 -----------------------------------tttga----gttgaaaa----a--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796501 31 -  4500979 ------------------TAAACAATGCTTCTGGCTCTTA----ATAGAAAC----A--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792643 22 + 20921866 -------------------aatcatt---------tcat-------CACAAC----AGTCC----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066079 62 +  4147112 AGGGAAGTCAAGAGTTGACAAACAAT---------CTAta----gataaaacaaaaagtcc--agtttgattgagtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  107388  0 +   343467 C

a score=85326.000000
s ce10.chrX             3681719 105 + 17718866 TTTTTGCAGAAGGCATCCGCATATGTCTCATTGGTTTGTGGATGCGCTCAGCTTCTTGTTGGATTTCTTGGCCTGTGTGGAGCAGTTAACAGGAGCAGATTCTTA
s cb4.chrX              8833458 102 + 21540570 ---tttcagaaagccTCTGCATATGTCTCATTGGTTTGTGGATGTGCCCAACTGTTGGTCGGGTTCCTTGGGCTGTGTGGTGCAGTGAATAGAAGTCGATTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   796532 105 -  4500979 TTGTTTCAGAAAGCGTCGGCATACGTTTCCCTGGTCTGTGGGTGTGCTCAACTACTGGTTGGATTTCTTGGATTGTGTGGGGCTGTAAATAGAAGCAGATTCTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792665 105 + 20921866 TCGTTTCAGAAAGCGTCTGCTTATGTTTCTCTTGTATGTGGTTGTGCACAATTGTTGGTCGGATTCCTAGGATTGTGTGGAGCATGTTACAGAAGTCGATTCCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066141 105 +  4147112 ttttttcagaaagcctcTGCATATGTATCCTTGGTATGTGGTTGTGCTCAACTGCTCATCGGTTTTCTTGGATTGTGTGGTGCTGTTAATAGAAGTAGATTCTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107388 105 +   343467 tttttaaagaaagcCTCTGCTTACATATCACTTGTCACGGGATGTGCTCAACTTTTAGTCGGATTTCTGGGATTGTGCGGAGCTGTGAATAGAAGCCGATTCTTG
i caeJap4.Scaffold18142 C 0 I 145

a score=-4958.000000
s ce10.chrX             3681824 212 + 17718866 CTGTTAGCTGT-----AAGTTTGAAATTTTTA----AAAAAGTAACTTTTAATTAA---T----TTTCAGTTCGTCATGTTTTTAATTGGCACATTTTTGGCTGATGTTGCAATGGGAACTCTATCACTTTTCTATAAGGATAAAGTAAG-------------------TTGATATATGTCCTTTTTTGTGTTCGAGAA---------TTAAAATTATTCA--------------TGAAAATTCGAATTCTTGCCGTTG-------------------CTGATATATGT--
s cb4.chrX              8833560 247 + 21540570 TTGCTCATGGT--GAGA------TTAATTCTT----GGTCTATAAAGTT--ACAGGGTTT----TTTCAGTTCGTGATGTTCCTGATCTGCACTTTTCTGGCTGATGTTGCAATGGGAACACTGTCGCTATTCTACAAAGACAAGGTGAG-tgattttgtcgtt----ttttgtGT-TGGTTTCAGTTCTGGGTTACCATTTTTCCTCTAATAAGAACCCACCCACACTATC-AACTTTTAACTCGATTATCTCGACTCA-----------------TCTGAAGTATAT--
i cb4.chrX              C 0 I 169
s caeRem4.Crem_Contig0   796637 139 -  4500979 TTGCTAGCGGT--GAGAATCCTGCTGGTTTTC----AGTC--TAATTGT--ACTAG---T----TTTCAGTTCGTCATGTTTTTGATTTGCACTTTTCTGGCTGATGTTGCGATGGGTACCTTGTCGCTATTCTACAAAGACAAGG--------------------------------------------------------------TAATA-----------------------------------------------------------------------TACAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792770 217 + 20921866 CTATTCGCGGTATTAGAATCAAGAAGACACTT----GCATCAtaataaa--aacag---t----tttcagttcatcTTGTTTCTGGTTGGAACGTTTCTGGCTGACGTTTCGATGGGAACCCTCTCACTGTTTTACAAGGACAAAGTAAG-TGTTTTGAATCCG----TGTTATATGTGGTTTCTGGTGTGAGT--------------TCATACATATTCA---------------gtagaattgaatttttgtggTTC-------------------------TAAAT--
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      2066246 188 +  4147112 CTTTTTGCGGT-----AATCGCTGTGACACTTAAAGGCATGA-AATAAT--TTCAA---TATTGTTTCAGTTTGTTCTGTTCTTGGTAGGAACCTTCCTTGCTGATGTCGCCATGGGAAcactttcactgttttacaAAGATAAGGTAAG--Ggtttgaattt-----------------tattcagtGTGTTT--------------TGATACTTGTCAa--------------tgttgaaataa---------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107638 272 +   343467 ----CTGCGAC--CCGAAAAtaagtaaatttt----gaaaaataatgtg--cAAAT---C----TTACAGTTCTCCCTGTTTTTGGTGTGCACCGTGCTCGCCGACATCGCAATGGGAACCCTTTCACTTTTTTACAAGGACAAGGTAATATTGTTTTATTGTGTGGTTTTTCGATGTGGTTTTGTGGGTTTTCTCTGCCCGTTTATTTAACAACCGAGGAATGAGAACAGCTGCATCTGGACTGGGCTCGTTAGATCAAGAGTCAAAGGGCAGATGGTGAAGAAATGTGG
i caeJap4.Scaffold18142 I 145 C 0

a score=-31641.000000
s ce10.chrX             3682036 123 + 17718866 GTGTATGTGAAAACCTATCGTTTGCATAACTTCTAGTTTAAAAATGTTTT-----AATTGAAAAATGTGTGTTGTACGAGACATTAGATACAATTGAGAAGAAAAAAAAAACTGAATTGAGATTTTCA
s caeRem4.Crem_Contig0   796776  14 -  4500979 --------------------------------------------TATGT----------------GTTGTGTGg------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5792992  67 + 20921866 ------GTG-AAacc--t-----------------------gaacatttt-----tttaaaacagtttttgtggtgaaaaac--------tcattcaaaagaaat---------cattgag-------
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      2066434  57 +  4147112 ----------aaaccaGT-----------------------AAGTATCTC-----CGTTGA----TTCTTCTGATAA-----------------TCAAGAATAATAG-----TGCGTTGTT-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  107910 100 +   343467 TTATTTATAGAGaactgt-----tcaaaaaatttattaaaaaagcatccgaaaaatgtaaaaaaaattgttcgaaaaatgcaagcctagaaaattgaaaaaatca-----------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8833807 169 + 21540570 I

a score=-61476.000000
s ce10.chrX             3682159 505 + 17718866  
s cb4.chrX              8833976 687 + 21540570  
i cb4.chrX              I 169 C 0
s caeRem4.Crem_Contig0   796790 315 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793059 231 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066491 276 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  108010 418 +   343467  
i caeJap4.Scaffold18142 C 0 I 85

a score=-15605.000000
s ce10.chrX             3682664 77 + 17718866 TATGGT------AGATTTTAAAATTTCAAAAGTGCCAGCGTCTCCTTGTCTTCTTGTCATCGTAAA----TT-----------------TTGAattgaattatt
s cb4.chrX              8834663 78 + 21540570 CCT-GT--------AAATTACATTTGCACGTTGTTCAAAACCGTCCAGTTCTCCGTCTATTGTCACTGAAGT-----------------CTCATAAAAAGTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   797105 56 -  4500979 tcc-gttttgaaaaaagttgcattaTC---------------------TCCTCCGTCCATTGTCAC--ACGT-----------------TTCATTGA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793290 83 + 20921866 TC--ATTTTGTAACGTTTTAAATCCGCGTACCA---------------TCAACCGTCCATTGTTAC----ATATGTCAAATCATGAAGGTTTACGACActctta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066767 63 +  4147112 TCTGGTTCTGTAATGTCATGAATGCGCGTA--------------------AAATGTCCATTGTCAC----GT-----------------TGTATTACAACCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  108428 85 +   343467 I

a score=267911.000000
s ce10.chrX             3682741 446 + 17718866  
s cb4.chrX              8834741 461 + 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   797161 476 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793373 449 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2066830 448 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  108513 448 +   343467  
i caeJap4.Scaffold18142 I 85 C 0

a score=9710.000000
s ce10.chrX             3683187 33 + 17718866 TGTAATGCCTCCCCGGGCGTTCAAAGATCCCGA--
s caeRem4.Crem_Contig0   797637 27 -  4500979 TGTAATAGCT-----AACGTTCAAAG-TTCCGA--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5793822 27 + 20921866 TGTAATACCT-----GACGTTCAAAG-TTCCGA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2067278 27 +  4147112 TGTAATACCT-----AACCTTCAAAG-TTCCGG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  108961 31 +   343467 TGTAATAGCTTT---TGAGTTCAAAG-TCTTGTGA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8835202 33 + 21540570 I

a score=14893.000000
s ce10.chrX             3683220 54 + 17718866 CTAATGAGTGAA---------GTGATTTGAGCTA-AGAGTGATTG---AGTGTAAAGGTGTGACAAA
s cb4.chrX              8835235 41 + 21540570 CTATTGATAGAAG--------GTGTGTTGAG----TGAGTGTCAG--------------GTGACAAT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   797666 56 -  4500979 CTAATGAGTGA----------GTGAATTGAAGTATTGAGTGTTAGAG-TGTGTAAAGGTGTGACAAT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5793849 64 + 20921866 ctaatgagagaaaagaattgagTGAATTGGTTGAGTGAGTGCCTG---AGTGTAAAGGTGTGATAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2067305 67 +  4147112 CTAATGAGTGAAGAGAACTGAGTGAGTTGATAGAGTGAGTGCTTGTGTTGTGTAAAGGTGTGACAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  108992 53 +   343467 CTAATGAGTGT----------GAGTGTGAGAACAATGTGTGGTTG----ATGAACAGATAAGATAGA
i caeJap4.Scaffold18142 C 0 I 1806

a score=-5034.000000
s ce10.chrX             3683274 44 + 17718866 GAGGCCAAGGAAGACAAGACGATGGTGTCACATTCATCAATTTG---
s cb4.chrX              8835276 29 + 21540570 C-GATGGAGAATTAGAGAA--------------TAATCAA---ATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   797722 37 -  4500979 G-GAtggagaaaacgaaaagaa---------gtcAATCAACTCATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793913 30 + 20921866 G-GATGGATGATGGTTAAA-------------TCCATTATCTTA---
i caeSp111.Scaffold630  C 0 I 32
s caePb3.Scfld02_0      2067372 30 +  4147112 G-gatgaagaaaagtgaaa-------------tcaATTATCTCA---
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold18142  109045 1806 +   343467 I

a score=-6101.000000
s ce10.chrX             3683318 23 + 17718866 ATAAAATTGTTCTTC--AATTTTTG-------------------
s cb4.chrX              8835305 17 + 21540570 ATCAAAAACTCAGT---------------GTG------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   797759 30 -  4500979 ATCAAGATTTTCGCA--AGATTTTGACTGGTG------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2067416 30 +  4147112 --------------AGAAGATTTTGATTGGCGTGAAACAATTAA
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold18142  109045 1806 +   343467 I
e caeSp111.Scaffold630  5793943 32 + 20921866 I

a score=854.000000
s ce10.chrX             3683341 13 + 17718866 TG-----AAATGAAAGA--G
s cb4.chrX              8835322 20 + 21540570 TGTGAGAAAACAATTAACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   797789 15 -  4500979 TG-----AAATAATTAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793975 13 + 20921866 tg-----aaatgacTGA--G
i caeSp111.Scaffold630  I 32 C 0
s caePb3.Scfld02_0      2067446 13 +  4147112 TC-----AAATAAAAGA--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  109045 1806 +   343467 I

a score=244955.000000
s ce10.chrX             3683354 391 + 17718866 A-------------TTTAGCACCAATGTTGCGGGGGAGAAGGTCCCCTGGACTACAAGGATTCGTTCTGGTACATTACTAACACGTTGCGTGGAACTCGATCGTTTGTCCCGCCAAGTTGTTGCAAGCAAGCTCAAGTTGGAAGAGCATGGGCACCGGTTCCCATTGACCCGATGTGCACAACATATCGCTACCTTACCACGGCATTTGACACATCTGTAAACACTGTTGTGAGTGTGTAT--TAT-GTTTTC---TTGCTGGTGTGATTGTTGTGCT-------------AAT--AT--------TAAAGTTTTTAATTTATTTCTAAAGAAATGAGTTTTCAGGGGTGTAGTGAAAGACTAATGTCGTGGTTCAACGAGCAAATTTGGATATTCGTAGGATTTGGATTCGGTTCTGCACTGACCATGGTAA
s cb4.chrX              8835342 394 + 21540570 A-------------TTTAGCACCAATGTTGCGGAGGAGAAGGGCCACTAGACTACAAAGACTCATTTTGGTACATCACAAACACTCTCCGAGGAACCCGATCATTCGTCCCTCCAAGTTGCTGCAAGCAAGCACAGGCCGGAAGAGCATGGGCTCCGGTTCCCATTGACCCGATGTGCATAACATATCGTTACCTATCATCACCATATACAACATCTGTGAACACTGTTGTGAGTGTGTAT--CTA-Acag---------ctttgatttttttttggt----gtgactcaaaaattgagaaa-gtcgGAAAATAGTGATTTATTT---------TGTGATTTCAGGGATGCAGCGATCGACTTATGTCATGGTTTAATGAGcagatttggatttttgttgGCTTTGGTTTTGGATCAGCACTGACTATGGTAA
i cb4.chrX              C 0 I 578
s caeRem4.Crem_Contig0   797804 403 -  4500979 AGTGAAAAGATATTTTTAGCATCAATGTTGTGGAGGTGAAGGCCCTTTGGATTACAAGGACTCATTCTGGTACATCACAAACACTCTGAGAGGAACACGATCATTTGTCCCGCCTAGCTGCTGCAAACAATCCCAAGTTGGAAGAGCATGGGCCCCGGCTCCCATCGACCCAATGTGTATTACATACCGTTACCTTTCAACACCTTACGAATCATCAGTAAACACTGAAGTGAGTGTGAAT--CTA-ACCGT----GTGCTTGTGATGTTTTTGTGCTAAACGTAAAATAAGAA--GAGACA-GTAGGAAACATACAA--------------------ATTTCAGGGGTGCAGTGATAGGCTCATGTCGTGGTTCAACGAACAAATCTGGATTTTTGTCGGATTTGGTTTTGGATCAGCATTGACTATGGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5793988 388 + 20921866 A-------------TTTAGCATGAATGTTGTGGAGGCGATGGTCCATTAGACTACAAGGATTCGTTTTGGTACATCACAAACACTTTGAGAGGAACAAGATCATTCGTCCCTCCCAGTTGTTGCAAACAAGCCCAAGTCGGAAGAGCATGGGCTCCTGTTCCCATCGACCCTATGTGCATTACATATCGTTACCTCTCTCCTCCATATCAAACATCTGTAAACACTGTTGTGAGTGTGTTT--CTCTAACATT---GTGAATGTGAAAATGCTGTGAC----TCAGATCAAAAG--ATGCGT-GTTtaaacat----atttt----------------tattcagggATGCAGTGAAAGACTCATGTCGTGGTTCAACGAACAGATTTGGATTTTCGTCGGATTTGGTTTTGGATCGGCTCTCACAATGGTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2067459 386 +  4147112 A-------------TTTAGCATGAATGCTGTGGAGGAGAAGGACCGTTAGACTACAAAGACTCCTTTTGGTATATCACCAACACCCTGAGAGGAACTAGATCATTTGTCCCACCCAGTTGCTGTAAACAGGCTCAAATAGGAAGAGCATGGGCTCCAGTTCCAATCGATCCAATGTGCATCACTTATCGATATCTATCATCACCATATCAGGAGAGTGTGAACACTGATGTGAGTGTGCTA--CTA-ACCatg---ttttctgtg-ttttgcAGTGCT----TTTGATctgaat--at-tga-ttttaaaCATTGAGATTT-------------------TTCAGGGATGTAGTGAAAGACTCATGTCTTGGTTTAATGAGCAAATCTGGATTTTTGTTGGATTTGGTTTTGGATCAGCGTTGACCATGGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  110851 403 +   343467 A-------------TTTAGCATCAATGTTGTGGTGGAGAAGGTCCAATGGATTACGAAAGTTCGTTCTGGTATATCACCAATACCTTGCGAGGAACTCGCTCTTTTGTACCCCCGTCTTGCTGCAAGCAGGCTCAAGTTGGAAGAGCTTGGCAACCAGTTCCGATTGATCCAATGTGCACAACCTACCACTACCGATCTAAAGCGTTTGAATCTTCCGTAAATAATGTTGTGAGTGTGCATAATTT-AACATTAACACAGTCGTG-TTCTGCAATGTT----TTACAGTTAgca--atttgacattttcacattttgcTGTATTT---------CTTGTTTCCAGGGCTGCAGTGAAAGGCTCCAGTCGTGGTTCAATGAGCAGATTTGGATTTTTGTTGCATTCGGAGCTGGATCAGCTTTTACAATGGTAG
i caeJap4.Scaffold18142 I 1806 C 0

a score=-6471.000000
s ce10.chrX             3683745 19 + 17718866 GGGAGGGTCAGACATTTGT----
s caeRem4.Crem_Contig0   798207 13 -  4500979 ------ATTCAATAGTTCG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5794376  6 + 20921866 ------ATAAAA-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2067845 12 +  4147112 ------GTTCGA-ATTTCA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  111254 10 +   343467 -------------AGTTATTTTT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8835736 578 + 21540570 I

a score=-12731.000000
s ce10.chrX             3683764 134 + 17718866 TT----CGGCATTTGAAAAAAAATCACATGTTTCACTAGATATAGAAGTTCTTACATGTATAAATTGTAAAATGATAGCCAAAAAAACAAATTAAAAAATTCATACCTTTCCGAGAAATACATCCCAATATCCAAAAA
s caeRem4.Crem_Contig0   798220  22 -  4500979 TTGCTACAGTAGTT--------------------------------------------------------------------------------------------------------CACAATCT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5794382  17 + 20921866 ------Caatcttc--------------------------------------------------------------------------------------------------------ttcattcca-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2067857  19 +  4147112 Tt----cgggtttt--------------------------------------------------------------------------------------------------------tgaaattca-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  111264   0 +   343467 C
e cb4.chrX              8835736 578 + 21540570 I

a score=308.000000
s ce10.chrX             3683898 20 + 17718866 AAAAACTGTTTTAAATATTT
s caeSp111.Scaffold630  5794399  9 + 20921866 --------ttttaaaca---
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2067876 12 +  4147112 --------ctttgaaagttt
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142  111264 20 +   343467 AAAAGCGTTTCTACATACTT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8835736 578 + 21540570 I
e caeRem4.Crem_Contig0   798242  0 -  4500979 C

a score=701252.000000
s ce10.chrX             3683918 1689 + 17718866  
s cb4.chrX              8836314 1849 + 21540570  
i cb4.chrX              I 578 I 44
s caeRem4.Crem_Contig0   798242 1760 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold630  5794411 1736 + 20921866  
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2067891 1749 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142  111284 1660 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-8313.000000
s ce10.chrX             3685607 43 + 17718866 ATATTTTTGTGTAGTAGCGAAT-TACAAAGCGAAGAGTGAAAAT------------
s caeRem4.Crem_Contig0   800019 32 -  4500979 GAAATTTTGCATGGCAG------CACCCA------AACCAAAAA------------
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold630  5796147 35 + 20921866 --tgttttttctgaaaaaattt-tattta------atggacaaa------------
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2069640 36 +  4147112 --tattttttctggaaaattgtatATTAA------AATAGAAAC------------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142  112944 36 +   343467 --------------AAAAGTAAATAATAA------ATTGCAAAAACGTTGGTGACA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8838163 44 + 21540570 I

a score=259686.000000
s ce10.chrX             3685650 517 + 17718866  
s cb4.chrX              8838207 517 + 21540570  
i cb4.chrX              I 44 I 5
s caeRem4.Crem_Contig0   800051 518 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold630  5796191 453 + 20921866  
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2069685 469 +  4147112  
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142  112980 468 +   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-7464.000000
s ce10.chrX             3686167 23 + 17718866 ----------TCAACGCGAATTCAAATCCACCT
s cb4.chrX              8838729 21 + 21540570 ----------CTATCTAGATTTTATG--TATGT
i cb4.chrX              I 5 I 2
s caeSp111.Scaffold630  5796644 21 + 20921866 ------------aaaataaattcaaaaccaCGA
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0      2070154 19 +  4147112 ----------TTTCAATGGTTTCA----Catga
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18142  113448 22 +   343467 TCTATCAAACTTTGTGTGGTTT-----------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   800569 31 -  4500979 I

a score=126295.000000
s ce10.chrX             3686190 183 + 17718866 CACCTCAGCCTCAAGGACTCGCACAGTTTCGGTGTGAGTTTCTTTGTGCGCTTCCAACTCCTTCTGAGTGTTTTCGTGTAATAATCGGTTCCTATCTTCGGTGTGAGAAATTTCTTTCTCAAGTTGCTTACGAAGGTTCAATATCTCAGCATCTGAA-AATGAGCTTTTAATGATGAAAATTTT
s cb4.chrX              8838752 175 + 21540570 TACCTCAGCATTAAGAACGCGTACAGTCTCGGAGTGCTTCTCTTTGTGATCTTCCAGCTCTTTCTGTGTGTTCTCTTGCAACAATCGGTTCCTATCCTCGGTGTGAGTGATTTCCTTCTCCAGTTGTTTTCGGAGAGTCATGATTTCGGCATCTAA---------TAGTGTGAGTTAAAatcaa
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   800600 183 -  4500979 TACCTCGGCATTCAGAACACgaacagtttcagaatgagTCTCCTTGTgctcatcgagttctttctgAGTGTTTTCATGCAACAATCGGTTCCTATCTTCAGTGTGAGTGATTTCCTTCTCCAGCTGTTTACGGAGTGTCATGATTTCAGCGTCTAAA-ACATTTGTTGTGAAACATCACATCGT
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold630  5796675 182 + 20921866 TACCTCAGCATTTAGAACGCGCACTGTCTCTGTGTGTGTCTCTTTGTGCTCATCAAGTTCTTTCTGAGTATTTTCATGCAACAATCGATTCCTATCTTCAGTGTGAGTGATTTCTTTCTCCAACTGTTTACGAAGAGTCATTATTTCAGCGTCTAAA-AATACCAT-TTCTCATTAGGAATAGT
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2070186 183 +  4147112 TACCTCAGCATTGAGAACtctcacagtttcagaatggGTTTCCTTGTGCTGTTCCAACTCTTTTTGTGTAGTCTCTTGCAACAATCGGTTCCTATCTTCGGTGTGactaatttctttttcgagttgTTTTCGGAGATTCGTAATTTCAGcatctaaa-aattttagattGACACTAATGATTGT
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18142  113470 184 +   343467 TACCTCGGCTTGAAGAACGCGAACAGTTTCTAAATGAGATTCGTTGTGCTCTTCAATTTCTTTCTGTGTGTTTTGTTGGATTAACCGATTCATATCTTCTGTGTGGGACATTTCCTGTTCCAACTGTTTACGGAGAGTAGTGATTTCAGCATCTGAAGAAGAACAGTTTATTGAagaacatttt
i caeJap4.Scaffold18142 C 0 I 1431

a score=-6410.000000
s ce10.chrX             3686373 12 + 17718866 TAACTATCA-----ATA
s cb4.chrX              8838927 17 + 21540570 gaatcaaaaaattttta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   800783 14 -  4500979 TATCTAATAGA---CTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5796857 11 + 20921866 AAATTTGA------CCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2070369 11 +  4147112 TTTTCGAG------CAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  113654 1431 +   343467 I

a score=762903.000000
s ce10.chrX             3686385 986 + 17718866  
s cb4.chrX              8838944 858 + 21540570  
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0   800797 904 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  5796868 858 + 20921866  
i caeSp111.Scaffold630  C 0 I 35
s caePb3.Scfld02_0      2070380 859 +  4147112  
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold18142  115085 946 +   343467  
i caeJap4.Scaffold18142 I 1431 C 0

a score=0.000000
s ce10.chrX             3687371 41 + 17718866 AAAAATATTGTGAAAGAAACTGTGAAATTTTGAATTCGGGT
e caePb3.Scfld02_0      2071239 37 +  4147112 I
e caeJap4.Scaffold18142  116031  0 +   343467 C
e cb4.chrX              8839802 36 + 21540570 I
e caeSp111.Scaffold630  5797726 35 + 20921866 I
e caeRem4.Crem_Contig0   801701 38 -  4500979 I

a score=862580.000000
s ce10.chrX             3687412 1252 + 17718866  
s cb4.chrX              8839838 1205 + 21540570  
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   801739 1260 -  4500979  
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold630  5797761 1206 + 20921866  
i caeSp111.Scaffold630  I 35 C 0
s caePb3.Scfld02_0      2071276 1254 +  4147112  
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold18142  116031 1320 +   343467  
i caeJap4.Scaffold18142 C 0 I 17

a score=-17173.000000
s ce10.chrX             3688664 74 + 17718866 CAGTTGATGTTGCTGAGAAACCATCAGTTAGACTTAAAGGTTGAGTAA------------AAATCCGTTCTGAAAAATTCTAAAAA-------------
s cb4.chrX              8841043 53 + 21540570 ------------------------------GCGTTGCataatgaataa------------aaattgaagtt----aGGCTCAAGCAGAacatttctaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   802999 23 -  4500979 ------------------------------ACATAACAGAAATAATAT------------A------------------------AGAA----------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5798967 36 + 20921866 GTATTGA----------------------CAgattaaaaaactaacta------------a-------------------taaaaaaaa----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2072530 48 +  4147112 CAGTTGG----------------------GAAATTTCATAATAAATGAGTTTCTCGAAATA-------------------CAAAAAGGA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117351 17 +   343467 I

a score=-2098.000000
s ce10.chrX             3688738 26 + 17718866 ATTGTTGGAAAAAATACCTATTTTCT---
s cb4.chrX              8841096  9 + 21540570 --------------------cttttttct
i cb4.chrX              C 0 I 36
s caeSp111.Scaffold630  5799003 15 + 20921866 ac-----------gaacttACTCTTT---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2072578 19 +  4147112 AT-------AGgaaaactcactcttt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117351 17 +   343467 I
e caeRem4.Crem_Contig0   803022  6 -  4500979 I

a score=300.000000
s ce10.chrX             3688764 1 + 17718866 C
s caeSp111.Scaffold630  5799018 1 + 20921866 C
i caeSp111.Scaffold630  C 0 I 227
s caePb3.Scfld02_0      2072597 1 +  4147112 c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117351 17 +   343467 I
e cb4.chrX              8841105 36 + 21540570 I
e caeRem4.Crem_Contig0   803022 6 -  4500979 I

a score=-4697.000000
s ce10.chrX             3688765 331 + 17718866 AGGTTTTACACACTTATCGGTATCGAAGCGGACATAATCTTATTGTTATATAATTACGACTTTTTGTACCACATTTTTGTATTTTTACGCGTTGATTCATCGAATTATGCACCATATTTTCAAGTTAAGAAAGATTAAAATTTCAGCTGAAACTGCGCCTTTTCTCCAAAACTTCGAACAACTATAACTTTTAATTTGAGAAATATTTCGAATTTTTCTTAGCGAAACTTGGATAGCTGTGCATATAAATAAAGGCAAACCTTTAGGCTTACAATGCAGTAGCATTTTTAAAGCACACAGATTGGCTTAGTTTGAAAGCCTAATCAAATTG
s caePb3.Scfld02_0      2072598 126 +  4147112 ----------------------tCGGAG----------------------------------------------------------ACGCTCTGA--CATCGGA-------------------------AAAG-----------GGCTGTAACAGCCC----TCTCTGA----CTGAGTAATTATGATTATTAGT-------------------------------------ACTGGTGtgcgctgaaaaaaaa--------------------------agcattgtaaaaaa-------------tagtttga---tcCTACGAAATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117351  17 +   343467 I
e cb4.chrX              8841105  36 + 21540570 I
e caeSp111.Scaffold630  5799019 227 + 20921866 I
e caeRem4.Crem_Contig0   803022   6 -  4500979 I

a score=58.000000
s ce10.chrX             3689096 5 + 17718866 -AATTT
s cb4.chrX              8841141 5 + 21540570 AAATT-
i cb4.chrX              I 36 C 0
s caePb3.Scfld02_0      2072724 5 +  4147112 CAATT-
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18142  117351 17 +   343467 I
e caeSp111.Scaffold630  5799019 227 + 20921866 I
e caeRem4.Crem_Contig0   803022 6 -  4500979 I

a score=13456.000000
s ce10.chrX             3689101 51 + 17718866 ACTCACTCTTTCTCGTAAGCGCTCTGACA------TTGAAAAGGGCTTTGAC-AGCCC
s cb4.chrX              8841146 52 + 21540570 ACTCACTCTTTCTCGAAGGCGCTCTGACA-----TTGGAAAAGGGCTTGGGA-AGCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   803028 52 -  4500979 ACTCACCCTTTCACGCAAACGCTCTGACA-----TTTAAGAAGGGCTTGGAT-AGCCC
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0      2072733 54 +  4147112 AGTAATTATTTCG-ATGGACGTtgtcaaaattatttcaaaaagttttcagaa-aac--
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142  117368 53 +   343467 ACTTACTCTTTCGCGTAGTCTTTCCGACA-----TTTATAAAGGGCTGAAAACAGCCC
i caeJap4.Scaffold18142 I 17 C 0
e caeSp111.Scaffold630  5799019 227 + 20921866 I

a score=2332.000000
s ce10.chrX             3689152 3 + 17718866 TCT
s cb4.chrX              8841198 3 + 21540570 TCT
i cb4.chrX              C 0 I 230
s caeRem4.Crem_Contig0   803080 3 -  4500979 TCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799246 3 + 20921866 TCT
i caeSp111.Scaffold630  I 227 C 0
s caeJap4.Scaffold18142  117421 3 +   343467 TCC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2072787 0 +  4147112 C

a score=-2788.000000
s ce10.chrX             3689155 19 + 17718866 TTAGACTGATTA--------TCTGTGG
s caeRem4.Crem_Contig0   803083 18 -  4500979 -CTGACTGATTA--------TCTGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799249 26 + 20921866 -TTAAATTGAGAAGCTAAGTCCTGGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2072787  7 +  4147112 --------------------tctgAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  117424 18 +   343467 -GTTGTTGATTA--------GCTATTG
i caeJap4.Scaffold18142 C 0 I 59
e cb4.chrX              8841201 230 + 21540570 I

a score=-4605.000000
s ce10.chrX             3689174 19 + 17718866 TTAA--GTGATGACGTGGCGC
s caeRem4.Crem_Contig0   803101 20 -  4500979 TTATTTGTTTCGA-ATTGCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799275  4 + 20921866 ATAC-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2072794  4 +  4147112 ATGT-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117442 59 +   343467 I
e cb4.chrX              8841201 230 + 21540570 I

a score=-5969.000000
s ce10.chrX             3689193 36 + 17718866 TGAAAATAGTTGAATTAAGTTTTATGTCT---------AGAACTA
s cb4.chrX              8841431 18 + 21540570 taaaaat------aaca---------------------gagtcta
i cb4.chrX              I 230 C 0
s caeRem4.Crem_Contig0   803121 39 -  4500979 tgaaaga------aatgttttctagGTTTATTAGTTACGAAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799279 24 + 20921866 TGAAAGTGTTCTCCATA---------------------AAAGTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2072798 19 +  4147112 TAActgtg-----aata---------------------aaatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117442 59 +   343467 I

a score=-2598.000000
s ce10.chrX             3689229 11 + 17718866 GAAAAAGTAAA
s cb4.chrX              8841449 11 + 21540570 aaaagaatcca
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   803160 11 -  4500979 GGGAAGATACA
i caeRem4.Crem_Contig0  C 0 I 144
s caeSp111.Scaffold630  5799303 11 + 20921866 ggataataata
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2072817  4 +  4147112 tgaa-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  117501 11 +   343467 GATGAAATTTA
i caeJap4.Scaffold18142 I 59 C 0

a score=54402.000000
s ce10.chrX             3689240 280 + 17718866 CGAAAAAATAAATAAGAGAACAGTTATATAAAAATAAATTAGGGAT-------TCCTTTATCAGA--AAATACAAATTCAG-T----------------AAAACA-AAAGGTATA--GAA---GC-CTAGAGG------------TTC-TCGATATAATAGAC--AAGGAGTGATTC----------AGAAAGAGAG--ATGTAGAAGTGACTGGACACTTC---CGAACGAGCAACTGTTCAAGA---------------------GAAGAGACT--AAGAGATCCGGATAGAAGAGC-----------CAACTGT-----TGCGCCTTGTAGTCGACATGATACTACTCAAC------------ACCGGCGGTGGATATACG-AATGGACGTT
s cb4.chrX              8841461 338 + 21540570 cagaaa-------aaCTTTAATCTTA---GATAATGGGTTCGAATT---AAAATAGTCTCACCGGAAAGACATAAAACAAGTT----------------GAAATT----GGTACACAGAAACTAC-TTGAAGAGAGAAAGGCTATCTC-TTGATATAATCAAA--GAGAAGTGATTCAGAGTCGACCAGAGACAGAGGTATATAGAAGTGACTGGGCATTTTCCACTTCGGAGCAACTGTTCGAGACACGAGCAGCTCAGCCTGGATGATATGAG---AG------------ATAGAGAAAACGCCGGACCAACTGTTGTCCTGCGCCTTGTAGTCGACATGATACTAGCCAGCCAGGGTGGCGACGGCGGCGATGA--GTACGAAATGGAC---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   803315 266 -  4500979 CACAAATATAAATAAgttgaactgaa---aacaat--attcaaatcataaacaaaattttaaagg------atAAAGTTAATT----------------ATGATTCAAAGGTACA-AGAA---AC-TTGAAAGGGG---------CTT-TCGAAATAATAAAA--GGGAAGTGATTC--------------ACAGAG--ATATAGAAGCGGCTGGGCATCT----CTACGGAGCAACTGTTCGAGA---------------------GAATTGAG---AGGCG--------AATAGAGA-----------CAACTGT-----TGCGCCTTGTAGTCGACATGATACTACTCAAC--------------CGGCGACGG--GTACG-AATGGACGTT
i caeRem4.Crem_Contig0  I 144 C 0
s caeSp111.Scaffold630  5799323 242 + 20921866 -------------------------------------CTTTGTGATTTCAGAAAGGTTTAACACA--AAACTTGAAACCAGTT----------------ATGATG-AAATGTACA-GGAA---ACTCTGGGCT------------CTTcttgaaataataaaaatgggaAGTGATTC----------------AGAG--AGATAGAAGCGACTGGGCACCTT---CATCCGAGCAACTGTTCGAGA---------------------GGACAGAGAATAAGCG------GTGAGAGAGC-----------CAACTGT-----TGCGTCTTGTAGTCGACATGATACTACTCAAC--------------TGGCGATGG--GTACG-AATGGACGTT
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2072821 207 +  4147112 -----------------------------------------------------aggttgAAC-------ATTTAAAA----TT----------------GTAAAG-ATAGGTACA-AGAA---AC-Ctaaata------------ctt-tgaaaataataaaa--gggAAGTGATTC----------------AGAG--GTATAGAAGCGACTGGGCACCTC---TAGTCGAGCAACTGTTCGAGA---------------------GGACGAA----AAGCG--------GATAGAGA-----------CAACTGT-----TGCGTCTTGTAGTCGACATGATACTACTCGAC--------------TGGCGGCGG--GTACG-AATGGACGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  117512 272 +   343467 --------CAAATAATCAAGttctgagaaaaaaagacaattaaaaaataaaaatttttaaaaaaggacAATTTTACTTTAACTTCCGGAAGTTTCCAAAATGACG-AAAGATGCAGAAAA---AC-TCCAGTG------------CTC---AAAATAATAAAA--GGGAAGTGATTC--------------AGAGAG--GTATAGGATTGGCTGAGAAG------CCAATGAGCAACTGTTCGGGC---------------------TCT--------CGGTG--------AGAAGAGC-----------CAACTGT-----TGCGCCTTGTAGCGGACATGATACTACTCAAC---------------GTCGGCGG--GTACG-AATGGACGTT
i caeJap4.Scaffold18142 C 0 I 788

a score=4600.000000
s ce10.chrX             3689520 21 + 17718866 GTGCCACTCACCCGGGAG---GGG
s cb4.chrX              8841799 11 + 21540570 -------------GGTGTTTAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   803581 23 -  4500979 GTGCCACTCA-CGGGTGGATAGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799565 20 + 20921866 GTGCCACTCA-CGGGTGG---GGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2073028 20 +  4147112 GTGCCACTCA-CGGGTGG---GGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  117784 788 +   343467 I

a score=52530.000000
s ce10.chrX             3689541  97 + 17718866 GAGAAACATCGAGACTG-CTAT---ATCAGATAATGAGTACGCACAC-AGC-----------AGTGCACATAGGATACGTTGACAAGA--CCCGATGAA--TGT----GATGACG------------------------GTGAGC
s cb4.chrX              8841810 139 + 21540570 G-GAAACATC-AGACGGCCGATATCATCAGATAATGAGTACGCACACAGACACATACACACTAGTGCACATATGATACGTTGACAGGATACTCGATGAATTTGT----GACGATGTATCACACTGAGCCACCCTCCCGGGAAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   803604 108 -  4500979 GAGAAACATC-AGACTG-CGAT---ATCAGATAATGAGTACGCACACTCGC---------CCAGTGCACATATGATACGCTGACAGAA----CGATGAA--TGT----GACGATGTATTAGTCGGA-------------GGAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799585  89 + 20921866 GAGAAACATC-AGGCTG-TGAT---ATCAGATAATGAGTACGCACACTAGT-----------CGTGCACATATGATACGTTGACAGGA----CGATGAA--TAG----GATG------------------------------AGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2073048 105 +  4147112 GAGAAACATC-AGGCTG-TGAT---ATCAGATAATGAGTACGCACACTAGC-----------AGTGCACATATGATACGTTGACAGGA----CGATGAA--TGG----GATGACG------GCGGGAAgat--------gaaatc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  118572  92 +   343467 GAGAAACATC-CG-TTG-AGAT---ATCAAATAATGAGTATGCTCTTTGCG-----------TACGCACATATGATACGTTGACAAGA----CGATGAA--TGTCACCGATGAGC------------------------------
i caeJap4.Scaffold18142 I 788 I 35116

a score=10940.000000
s ce10.chrX             3689638 56 + 17718866 ATAACGCTGCCGAAATGTGTACGGATTGATTGAAAAATAGATTAAGGGGGCTATCA
s cb4.chrX              8841949 38 + 21540570 G----GCTGTTGAAAAGTGTACGA--------------ATATCAAAGGGGCTATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   803712 38 -  4500979 ----------CGAGATGTGTACGA------TGACAT--AGATCAAAGGGACTATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5799674 42 + 20921866 ----------CGAAATGTGTACGAATGAATTAAAAG----ATCAAAGGGACTATTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2073153 44 +  4147112 ----------caaaaagtgtACAAATTGAATGAAGG--ATATTAACTGGACTTTCA
i caePb3.Scfld02_0      C 0 I 2364
e caeJap4.Scaffold18142  118664 35116 +   343467 I

a score=311.000000
s ce10.chrX             3689694 2 + 17718866 AT
s cb4.chrX              8841987 2 + 21540570 GT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5799716 2 + 20921866 GT
i caeSp111.Scaffold630  C 0 I 315
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  118664 35116 +   343467 I
e caeRem4.Crem_Contig0   803750 0 -  4500979 C

a score=59.000000
s ce10.chrX             3689696 30 + 17718866 TTAG-------------ATTTATTGCTTTAAT--TTTTCAATTTG
s cb4.chrX              8841989 45 + 21540570 GAAGACAAATGAAAATAACTAATTGCTTTTGTGCCTTTTGATTTG
i cb4.chrX              C 0 I 5087
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  118664 35116 +   343467 I
e caeSp111.Scaffold630  5799718 315 + 20921866 I
e caeRem4.Crem_Contig0   803750  0 -  4500979 C

a score=-5532.000000
s ce10.chrX             3689726 386 + 17718866 TTGTAAGCCATAAGGAAAAAATGAGCAAAAGTTGTATCCTCTTCGATAGCGTTTTTTTTTTTCAAAAGATTTCGTCAGCCTAATT--TCAAAACATACAGATTGGATAAAATGTTTCAATTTCAAAAATATTTCGTAGACAAAAATAGCTATATTTAACTTCTTCATCTAGTTTCACTTAAGCACGATCTCTTTTGATTTTTTGATTTTGATTTTGATTTTGGGAATTAAATGTTTGAGGTAATAATAAATAATCAACAAAATAATAATGTCCGTCTGTCCAGTTTGCCTAATTTGTTTGTGAAGTCAAAAACGCGTCTCTTGAGTTATTCAACCCTTTCTAAACTTGAATTTAAAATTGGTAGAAGTTTGAAACTGGTTAGAGCCTC
s caeRem4.Crem_Contig0   803750 169 -  4500979 ---------GCAAAGGACAAATGAAAATAA------------TACATagcttttttctcactt-tgagATTTCA--AGGGAAATTTGTCAAAGCATA---ATT--ATGAAAAGCTT-----------ATTTTCCCTGAAATGAAATAA---------------TCATCGA--------------------------------------CGATTTTTATTATACAAATTTATTATC--------------------------------------------------------ATTCACT----------AGGAAGTATCT-----GTTATTACA-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  118664 35116 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5799718 315 + 20921866 I

a score=-9007.000000
s ce10.chrX             3690112 186 + 17718866 TGAAAAGATGAAGAAAT----ACAAGACTAGACATTTTTATTC-TAAAAATCTCAATACATAAATTGATTTACCCATAAAGTC----AATAAATTAAAATTG----AAGACAATGACACGTAATT---------AAATGGACTGAAAAATACAACTGAATGGTCATGGTTAATCACAGTTAAAACATCTGATCACTGGGTACAATGTG-----------
s caeRem4.Crem_Contig0   803919 123 -  4500979 ---------GAAGAAATCGGGACATGAGTAATTATT-------------------ACACAGAAAATGAC----------------------------------------ACATTTTCCGGCGAAC---------AGGTGGGCAAGGGATCACAGCGGG------AAAATTAATAATATCTACACCAGGTCGGTACTCTATACAATG-------------
i caeRem4.Crem_Contig0  C 0 I 3
s caeJap4.Scaffold18142  153780 214 +   343467 TGAAAATACAAAGTAAC----ACAAAACGTATTAAAATCACTCATTTAAACATAAATATCACGATTAGCTTAAAACCAGAATTACAGAATACAACAAAGTTGTGACTAGACAATTAAAAGCAAGCTCAATTCAAAAATACACGTAGATGTAGTATGGAATTGC-ATTGGCAATCACAGTTTATATAGCACAGTCACCAGAGcgatttttcttaaatttg
i caeJap4.Scaffold18142 I 35116 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5799718 315 + 20921866 I

a score=4352.000000
s ce10.chrX             3690298 269 + 17718866 TACA-------------AACAATAACGGAAT-------CTAGAAAAGGTTGAAGAAAATTTCTTCGTAATACTCTAATT---TGTCAGTAGAATCGCTGGTGAGACCGGCCAAAAAGCATAGTTCCGGAAGAATAGCTGGCGGCAAGTTCAGCTGAAGTTGCTCGTAGATTGTAATACGCGAGAGACTTTGCGGACGTTGAACCTG--------TAAATA--GTCAGTTTGAGACACTTAAAAGTACCAAAATTCATTA------AAACTCACCATTTTGAATGCCAAAATGCGTTTTTCAATAAACT--
s caeRem4.Crem_Contig0   804045 269 -  4500979 CACAAGAGTTGAACTCTTTCAAT----------------TAAAATAGGTTAATGAAAGCTTCTTCAAACTTTCTGAATA---ATTCGTTCTTCTCCGCCAATAAATAGTTCAAAAAGAGCAGTTCGATGATCAAATTCGGCGGAAGATGCACAAACAATTGTTCGTAGATAGTGATGCGAGACATACTTTGAGGTGGtggcatctgaaaatcaatgatttcGTTTACTGAGAATCAATTTTCCGTTTAAA--------------------TACCTGTTTGAATGCATCAATACGTTCTTGAATGAACT--
i caeRem4.Crem_Contig0  I 3 I 82
s caeSp111.Scaffold630  5800033 248 + 20921866 TACA-------------TACAAT----------------TagaaaagcaagaaaaatgCTTCTTCATGACACAGGAAT---------TTAGGATCAGAAGTGAGACTGGCCAAGCAACATAATTCAGGAAGCAACTCGTATGGACAGTTGACGTAGATTTGTTCATAAATAGCGACCCGGACAATATTCTCACGATTTTTCGCCTG--------TAATTATTATTAGTTGAAGTTAATTTCATGAAGCAAACT--------------GCTTACTCTCTTGAAAACATTAATTCGATCGAAAAGATACT--
i caeSp111.Scaffold630  I 315 C 0
s caeJap4.Scaffold18142  153994 290 +   343467 -----------taataaaaaaataaagaaattggATTCCTAAAACATGTTGAAGAAAACCTCTTCATAAGTGTCAAACTGAGTTTCATTTGGGTCAGAAGCAAGAGATTTTAAAAAGCACAACTCTGGCATGAAGACACGTGGCAACCCGGCGTAAATTTGCTCGTAAATGGTAATGCGAGAAAAACTTTGTGGGCGTGGAATCtg--------taaatgtaaaaaaatggTAT-AATTCATTGTTTACAAGTTAGTAAAGTTATAACCATACCTCGCGGAATGCTTGAATACGACttttaataaaggtt
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=-1297.000000
s ce10.chrX             3690567 41 + 17718866 GT-----AACACTTTGTTCATTTCATTCGAATTTTCT-----TCCCAAGTT
s caeSp111.Scaffold630  5800281 40 + 20921866 GTTTGAGAACGCATTCTCCTTCTGgagcaaa-----------aacaaaatt
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  154284 49 +   343467 --ttaacattgaatgtttcttttttgtcaaattttttgtttctctcatatt
i caeJap4.Scaffold18142 C 0 I 56
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeRem4.Crem_Contig0   804314 82 -  4500979 I

a score=-146.000000
s ce10.chrX             3690608 28 + 17718866 TTC-ACAAAAGTATCCACCGTTTCATAGA
s caeSp111.Scaffold630  5800321 29 + 20921866 ctcGGCGAACTTGGCAACTATTTGCAGGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  154333 56 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeRem4.Crem_Contig0   804314 82 -  4500979 I

a score=488.000000
s ce10.chrX             3690636 10 + 17718866 ATTTTTGATA
s caeSp111.Scaffold630  5800350 10 + 20921866 ATTCATGTCG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  154389 10 +   343467 ATTTTAAATG
i caeJap4.Scaffold18142 I 56 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeRem4.Crem_Contig0   804314 82 -  4500979 I

a score=-2391.000000
s ce10.chrX             3690646 64 + 17718866 ------TGAGAA---ATTTTCGTGAAAAATTGGACGACCC---GATTCTGAAATCTTCTTTGCTCTGTTAGCAATT
s caeRem4.Crem_Contig0   804396 64 -  4500979 ------GAGAGG---ATCATCATGAATAATTGGACGTCCT---GCTTGCATGACTTGTTTGGATCGGACATCTATT
i caeRem4.Crem_Contig0  I 82 C 0
s caeSp111.Scaffold630  5800360 64 + 20921866 ------CATTGG---ATCCGAATGAGTTGTTGGGCGTCCGACAGTTCTCAAACTCTGT---GCtctttcttcaact
i caeSp111.Scaffold630  C 0 I 23
s caeJap4.Scaffold18142  154399 73 +   343467 TTAAGATAAAAACCCACTTTCTGAAGTTGTGGCACGTCCATTTTTTCTTAAACTTTCA---Gctcttttcaaaata
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=1718.000000
s ce10.chrX             3690710 15 + 17718866 GCCATTTGAACTGCA
s caeRem4.Crem_Contig0   804460 15 -  4500979 GCCATCCTGACAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  154472 15 +   343467 gccgaTTTTACAGCA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800424 23 + 20921866 I

a score=1718.000000
s ce10.chrX             3690725 46 + 17718866 TGCAGGATTTGGGGACTGATCAACGATGGCGGTGGATTCGAGA-CGG
s caeRem4.Crem_Contig0   804475 47 -  4500979 TGTAGGATTTGTGGATTCACTTTTGGCGGCGGTGGAGGTGCGACCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5800447 42 + 20921866 TTTAGGATCAGTGGG---ATTCTTG--AACTCTGACGTAGAGACCGA
i caeSp111.Scaffold630  I 23 C 0
s caeJap4.Scaffold18142  154487 46 +   343467 TGAAGAATATGAGGATTCATCTGCGGGAGTGGCAGGGTTGAGACAG-
i caeJap4.Scaffold18142 C 0 I 399
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=-1030.000000
s ce10.chrX             3690771  95 + 17718866 GTCTTTTTCC--------------------TCGCTTCTTTTCTGAA----ATTGAAAATATTAGTACCAAATGGCGATGATG--------AATCTCACTTTGGTCTTTCTGTCCTGAGCTTGAGT---AG
s caeRem4.Crem_Contig0   804522 119 -  4500979 AACTTTTTCCACAATCACTTTGTTGTTTATTTtgcttttctctgaa----atttaaagtgtccatttaaaa-----ataattcattatTTAATCTTACTGT--TCTTATTAGACTTGGCTAGAAGTGCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5800489 113 + 20921866 GATCTTCTCCACAATAATATCGCGTCTTACACGCCGCTTTTCTGGAACGGATTCAA--TGTTTATTTGA---------TATTTCTACCACAAGCTTACTTT--TCTTAAT-TTCTGCGATAGAAG---AG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  154533 399 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=10873.000000
s ce10.chrX             3690866 132 + 17718866 TCACCACCAG--------------------CTTGCTCCACATGCTTCTGTC--------------TTTCTCGATATGCTGCTTCCAGTACATCGTCATCAGTTTCCAATTGATTTGCCTTCTGTGCAGCCATAAGGCGCTTTTCTTTTTTTGTCAACTTTT---TCCTG---
s caeRem4.Crem_Contig0   804641 161 -  4500979 CTGCT-TCAGCggcttctttttctgttttttctgctttttctgcttctgccaataaatctctcttctgcttAAT-TGCTCGTTCCAGAATAACGTCATCcgtttccatttctcttttcttttgttcttgtCGCAGACGCTTCTCCTTTCTTGTGAGCT------TTTTC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5800602 147 + 20921866 ATACC-CGAG--------------------TCAGCGCTTCCAGTTCTCGCCAAGTAGTCAGTCTTTTCCTTCAT-TGCCTGCTCCAAAATGTAATCATCcgtctcctcttcttttgcCTTTTGAGCTGCTTTGTGACGTTTCTCCTTCTTTGTCAGCTTATGGATTTTG---
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  154932 129 +   343467 ------TCAG--------------------CACGAGCATCATACTCTTTTC--------------TTGCTCTGTACGCTTCTTCCAGCAAAAAATCATCCGTTTCTAATCGTTTCGCCTTCTCTGCAGCTAAAATTCGtttctccttttttgacattttct---ttttcctg
i caeJap4.Scaffold18142 I 399 I 2209
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=-1017.000000
s ce10.chrX             3690998 21 + 17718866 GCGTCGGGTAGAG------CAATAGTT
s caeRem4.Crem_Contig0   804802 21 -  4500979 ACACGGGATGAAGACGTTGCG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5800749 27 + 20921866 GTATCAGACGGTGAAGGTTCAACAGTT
i caeSp111.Scaffold630  C 0 I 2693
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I

a score=570.000000
s ce10.chrX             3691019 11 + 17718866 GATGCTTCTTT
s caeRem4.Crem_Contig0   804823 11 -  4500979 GATGTTGTTTT
i caeRem4.Crem_Contig0  C 0 I 632
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I

a score=0.000000
s ce10.chrX             3691030 947 + 17718866  
e caePb3.Scfld02_0      2073197 2364 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   804834 632 -  4500979 I

a score=453.000000
s ce10.chrX             3691977 48 + 17718866 TTACCTGTCCGGAAGAAAACGATTGTGAT----GAGCATACTGATGATCCCG
s caePb3.Scfld02_0      2075561 41 +  4147112 TTACCTGTCTAGAAGAGTACG---TTGATCCGGGAGCAT------TATCC--
i caePb3.Scfld02_0      I 2364 C 0
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   804834 632 -  4500979 I

a score=6996.000000
s ce10.chrX             3692025 83 + 17718866 ATTGTGACATGGAAACGACGCATACAGGTGCGCTGACAACT---CGACAATATGCAACTCCATTGTTATCATAAATAATGTCTGGG
s caeRem4.Crem_Contig0   805466 83 -  4500979 ACTGTGCAACTGGTACAAGACA---AGTTGTTGTGACAACTACCCGGCGAAAAGCGAATCCATTCATATCATACACAATATCTGGG
i caeRem4.Crem_Contig0  I 632 C 0
s caePb3.Scfld02_0      2075602 78 +  4147112 -----GAAGCTGGAACAAGACA---AGTCGCGTTAACCATTACACGTTGATATGGCATTCCATTGGCATCATAGACAATGTTCGGG
i caePb3.Scfld02_0      C 0 I 2629
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I

a score=113.000000
s ce10.chrX             3692108 210 + 17718866 AATCCT---TCGTTGGCAGGTGGACCAGAATATTGACTGTAAGACGGTGATGGAAAGATGGGAGACGAGAATCCATATCCAGAAGGTGGCTTTGAAGTATCAATTTGAGGTGGTG-ACATTGAATACGATCCTTGCGAAAC----------CATTACAGCTCCGACTGGCATCATGGT-----TGGTGGAGCTGGCACAAATTGGGGAGGATTGTAATTCTGGGAACCA
s caeRem4.Crem_Contig0   805549 211 -  4500979 TGGTTTGGATCAATAACTTCTGG---AGATGGTTGACTGTAGTTTGGTGGC------ATGTATGGTGCAGCAACATATCCAGGACGAGGAGCAAGAATGCCCACT---GATGGTACACACGGAACATCATTCTGATTAAACACTGGATTCGTATAACAG-TGCGCTTGATATtgtggtggtggcggtggtggtgcCACAAGAGGAAACGGA--GCAATT---GGAACCA
i caeRem4.Crem_Contig0  C 0 I 405
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I

a score=0.000000
s ce10.chrX             3692318 480 + 17718866 ACAGGCACGTGTGGATGCATAGGCTGGTTTACAATCTGTGGGTGTGCAAATCCTGAATTCGACGCTGCCAAATCCATAGTGTATGGAGGAACAGGTTGCGGAAAGACGTTTGGATTTGATGCAAACTGTGCCGGAGGTGGCATGTAATTACCATGTTGAGCAAATGGGTGTACCTGAAAATTGCAATTGTTTCAAAGTTTTAAAGAAATTCTTATGGCCTTGGGGTTTTTAAACAGTGAAAAACTACATTTCTAAAAATTAAAACTTGTTTACTCCTCTCGATTGAAAAAAAAACCGATTTTTTCCATTAAATCAACGAGTTTCTAAAATCATTAAAAGTTTAATTGTCAGCTTTTAGTTTCGCCGTTCGCTTAATTTTTATTGCAATCTAGTATTCCCATTTCAAAAAATTATCAACGAAATAAGCTTTCAAATTGCCTGAGATTGGAAATTCTCAATATCTCATGAACAAACTTTTCA
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e cb4.chrX              8842034 5087 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   805760 405 -  4500979 I

a score=91.000000
s ce10.chrX             3692798 1 + 17718866 A
s cb4.chrX              8847121 1 + 21540570 a
i cb4.chrX              I 5087 C 0
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   805760 405 -  4500979 I

a score=2942.000000
s ce10.chrX             3692799 125 + 17718866 ATTGAAAAACAAACCTTAAATGAAGCATCCAACGTGCTCACCAAATTGTTCTGATATCCGCAATTTT-------GATA---AGGATTTGGGCACTGATTATTTTGGACGGGAG-CGGCGAAC--TGTTGCTGCATGAG
s cb4.chrX              8847122 125 + 21540570 aataaCGAACTAACCTTGTATGATTTGTCCAACGTGCTGACCAAATTATTGTTCTTTCCATTCTGTTCCATGCCAGGATT-AGAATGTG---AATTGTCGTCGTGGCTT-----CTGCAT----TCTTTCTTCATAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   806165 128 -  4500979 ACTGAATGACTAACCTGGCACGGTGCGTCCAATGTGTTGACTAGGTTGCTCCCGTTGTAATGTTTTT-------GGTATTGACCACCCG---ATTGGTCATCATAGTTTTTATACTGCATACAGTCTCCATTCATAAG
i caeRem4.Crem_Contig0  I 405 C 0
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeJap4.Scaffold18142  155061 2209 +   343467 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I

a score=17408.000000
s ce10.chrX             3692924 233 + 17718866 ATCATCAACGTCTTTTGAG--TTCAACAGAAC-CTCATTCTCAAAATTCCACAGCGCAATAGGATCATTTGATTCAAAAGCTCTTTGAACGATTTCCCCGTAACTTGGATCCAGACGATGAAGATTATTGTAGGAAAAGAGAATCTGTAAA------AAATTATTATATATAAGAATA-TACAAACGCTCTAAACATTAT----GTACCTTCTCCAATTGATTTCTTCTTTGAACACTATTCCTGAG
s cb4.chrX              8847247 227 + 21540570 GTCATCTAATTCATGTGAA--TTCAACAAGCA-ATcgttctcaaaattccagaggAGCAGCGGATTTCCCGTTCTAAAAGCCTCGGAGACCATTTTGGTATACGACGGATGAAGACGGTACAAGTTGTGATAGGCAAatgtgatctgaaaatttttttaattatgaaaaacatgaa------aacta-----------aaaaaaataccTTTTCCAACTGCTCTCGTCTGTATACAGTTTGTTCCAG
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   806293 231 -  4500979 CTCGTCAACCTCA---GAATCTTTTAGAATCATGTCATTCTCATAATTCCATAGCACAAGAGGATCTTTTGAATGGAAAGCAGTGTGTGCAACCATTGAGAATCGCTTACTGAGACGGTGAAGATTGTGATATGCAAATAGAATCTG----------TAATGATGAACA--ATGAATA-TATAATTACCTTTATGATTATATGAATGCCTTTTCTAACTGATACTTCCTATTTACTGTTTCCTCGAG
i caeRem4.Crem_Contig0  C 0 I 1607
s caeJap4.Scaffold18142  157270 232 +   343467 ATCATCAACTTCCCGAGAG--TTTAGTATGGT-TTCGTTCTCATAGTTCCAAAGAGCCAGTGGGTCTTTTGAGATGAATGCTTTGTGAGCTAATTCAGAGTAGCAAGGATCTAGTTGGTGAAGGTTGTGATACGCGAAAAGAATCTAAAACGTGTTTTAATGT--------acgaatgttttttttgttctaatatTTGC----TTACCTTTTCTAGATGCGATTTTCGGTTTACACAGTTTTTCAG
i caeJap4.Scaffold18142 I 2209 C 0
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I

a score=1084.000000
s ce10.chrX             3693157 90 + 17718866 AAAGTCCTCATGTACTTCACTCGAGTG----TCCTTCGG-------TTTT-CCAGCGAGATCTATCGTTTTGCATAGCTTCTGAACAAAGTTAACATGAAAA
s cb4.chrX              8847481 82 + 21540570 AACGGTCGTACGCACTC--------TG----TCTTCTGG-------TTTTGGCTCCGAGACCTTTCCGGCTTCATCactcctgaaaatag-aaacatcAAGA
i cb4.chrX              I 7 I 3814
s caeJap4.Scaffold18142  157502 93 +   343467 CAAGTCTGT-----CACCATCCGATTGTTGTTCCTTCGGCTGCAATTCTT-CCAACTAGACCTTTCATATTGCATGCCGCCTGCAAAT---TAATGCCAAAA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   806524 1607 -  4500979 I

a score=91.000000
s ce10.chrX             3693247 1 + 17718866 T
s caeJap4.Scaffold18142  157595 1 +   343467 T
i caeJap4.Scaffold18142 C 0 N 0
e caePb3.Scfld02_0      2075680 2629 +  4147112 I
e cb4.chrX              8847563 3814 + 21540570 I
e caeSp111.Scaffold630  5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0   806524 1607 -  4500979 I

a score=0.000000
s ce10.chrX            3693248 870 + 17718866  
e caePb3.Scfld02_0     2075680 2629 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5800776 2693 + 20921866 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=629.000000
s ce10.chrX            3694118 14 + 17718866 ATTGAAAAAAAATT
s caeSp111.Scaffold630 5803469 14 + 20921866 attgaaaccgaatc
i caeSp111.Scaffold630 I 2693 C 0
e caePb3.Scfld02_0     2075680 2629 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=19181.000000
s ce10.chrX            3694132 388 + 17718866 AGGAGGAACGAAGTTGAAAACTGAGGTGAACAAATGAAAGTGAAAAGACGCGCACGCAGGTGGTGGTGCTTAGTGTTTATCGTCACCCACAACAATAACTGGG-TGGGTAATATGGTGAGG--AAGAGGACTCGTTGGACAGGGC-AAAGGGCCCCTCG-----GCGGATGCcacgcacgcagcacacaaaacccccctacattcgttcgcgcgcacactcatagaacactcacacacacgcacacacacgctcacatatagccaactgcacccccacgtcaacaaaacacaaacacacaaacacgcacacacatgcgctcacacGACGACACGGCATCCAGAGGCACTAGCGCAGTTAATTTTTGACGCTCTAGACTAACAATGGGACTCTTTTAA
s caeSp111.Scaffold630 5803483 308 + 20921866 -----ggatgaaaatggaaaat---gggaggaaatggaagtgaaaaaaaagaggacaGAGTG---------TGCGTTCATC---TCCAATAA-AACCGCGGGGCAAAGAAGGGAGGAAAGGGCAGCAGGACGGGCCGGGCAACATTGAAGGGTCCGTGG--GCTGCTGCCGCCACGCACA-------------CCACGTACATTcgcgcgcgcg-------------cgcTCACAGGGGCACACTCATACACTCACATATAGCCAACCGCATCAGC-------Cagaacacacacac--------------------------------atttcTT-CCCAGAGGCACTAGTGCAGATGATTTTTGACACGTCATCCTAAATAAGGGACCCTCCAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2078309 312 +  4147112 AGAAGAAATGACaaaggagaat----gaagaaaacgaatgCTAAAAAGAAGACAAACGTGTG-------TTTTTGTTCATCG--GCCCACAA-AATGGATAGG-GAAGAAAGGACGAAAGGGCAAGCGGA-----CGAGCAACACTGAAGGGTCCGCTGCTGCCGCTGCTGCCACGCACA-------------CACCCAGCCTTCGTGCGCGAC-------------CGCTCACAAGAACACACTCATACACTCACATATAGCCAACCGCATCAGT-------CACAGCACACATAC--------------------------------ACACCGCATTCAGTGTCACAAGTGCAGATGATTTTTGACCTGTCGAATTAAAATCGGGACCATTCGAA
i caePb3.Scfld02_0     I 2629 I 182
e cb4.chrX             8847563 3814 + 21540570 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=717.000000
s ce10.chrX            3694520 73 + 17718866 CTCAATGAACATATGACAAATGTTCACGGATTCTCGTGTGATTGCGCACGA--AACAGAGCGTTACGGTGGGCGC
s caeSp111.Scaffold630 5803791 56 + 20921866 ------------ACGGTCTGCACTCACGGTCCCTCGTA-------GTACGGTCTGCTGAGCGTTACGGAAGGCGC
i caeSp111.Scaffold630 C 0 I 2043
e caePb3.Scfld02_0     2078621 182 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=0.000000
s ce10.chrX            3694593 1363 + 17718866  
e caePb3.Scfld02_0     2078621  182 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=91.000000
s ce10.chrX            3695956 1 + 17718866 A
s caePb3.Scfld02_0     2078803 1 +  4147112 A
i caePb3.Scfld02_0     I 182 C 0
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I
e caeRem4.Crem_Contig0  806524 1607 -  4500979 I

a score=5321.000000
s ce10.chrX            3695957 120 + 17718866 AACGGATGGAGAGAAA----ACGCCTGAT---TCAACGATTCACTTTTCATGTGATAATCATCGATC----TATT---TCCCTTTCCACTATTGTCGCTTTTGT----GTTCAAAA------AAAAATTCCACGATAAAGT-----GCT
s caeRem4.Crem_Contig0  808131 149 -  4500979 aataaagagagagaaaattgatggTGGATGATTCAGCGTTTTACCATTCATGTGATAACCAtcgatcttcttttttcttcacgtTGCAAGTTTTCCacgacaactttttttctaaaagttgaGAAGATTCCACGAACAGACAACATGCT
i caeRem4.Crem_Contig0 I 1607 I 45
s caePb3.Scfld02_0     2078804 130 +  4147112 AACGAATGGAATACAAA---ACGGCTGATA--TCAATGATTCACCTTTTATGTGATAATCGTCTATC----TCTTCCAtccgatttctcttttttcgttgtCAC----TTTCGAAA----GAAAGTTTTCTACGAGAATACGTA--GCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I

a score=369.000000
s ce10.chrX            3696077 35 + 17718866 GTTGAATTTATGATTGTCACGAGAA------TAAACTAACA
s caePb3.Scfld02_0     2078934 41 +  4147112 GTCACACAAGTAATTACTACAAGAATGGTTTTAAACAGAAA
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I
e caeRem4.Crem_Contig0  808280 45 -  4500979 I

a score=-2837.000000
s ce10.chrX            3696112 199 + 17718866 ---AATTTCTAATTGAAA---------ACAGGAAAAAAACCAGGCAAGCTTGAA---------------AATCTTATAAAAAA----------TATGCCTGAACA--------TGCAAATAGAAGAAGAAAAGGAAG----------------------TTTTCCAGAGCGATTGAAATGAAAGTGAAATCAATAAA-------------------AAAGTGGAAATATTCTTGAGGAACAAAAAAA---ACTGTCTCGATCATGAAACACATCGGCAAACTGGATAG
s caeRem4.Crem_Contig0  808325 261 -  4500979 ---AACTTCTTATCGTTTACCTATTTGACGGCAAAAAAGTCAGAGTAAATGATG-----------ATTAGATATTGCAAAAGATTGATATAGAAATTGCCGATCAAAGTTTTTGGAACATTG-ACAGAATATAGAAGAAAGGTGACCACATACCGTGATATTTCCAGAAGATGTgaaatgaaagtgaaaagagaaaaatgagagggGAATTGCGTCTAGGAGAAACACTTCTAGC--aagaaaaa-----actgttcaa-----GAAACGTGATGACAAACCGGCTgg
i caeRem4.Crem_Contig0 I 45 C 0
s caePb3.Scfld02_0     2078975 215 +  4147112 AGGAACT--------------------ACATCAGATAACACAGGAAGAAAGATGGCATTACACCCATTcacttttccagaaga------------------aacaCATTCTCTCGAAGTTCGAACAGGATGTATATG---------------------------CAGATGATTTttaagagaaggaggagatgaCAAATGGGAATGGGAG------AAAGCAAAAGAattctcga--aacaaaaaaaaccactgtCTCATCTTTGAAACACCGCCACAAACCGGATGG
i caePb3.Scfld02_0     C 0 I 1388
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I

a score=776.000000
s ce10.chrX            3696311 31 + 17718866 AATGGAAATTAATAAAGGAAAAATTTTCGAT
s caeRem4.Crem_Contig0  808586 25 -  4500979 agtagaa------aaagaaaaaatccacAAT
i caeRem4.Crem_Contig0 C 0 I 876
e caePb3.Scfld02_0     2079190 1388 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I

a score=0.000000
s ce10.chrX            3696342 416 + 17718866 GATATAATCTATATTTATTATATATTTGTTATCCATTGGCTTGAAAGAAGAATCTTTGAATTAGTTTCACAAAAAAAGACAAAATAAAAATTCTGATCAGTCAGAATTTGTACAAAAAGTATAGTTTTGAGGATTAGTAGAGCATTCATAAAAGCAAATTCAACATGAATTGTTTAAAAGTGGATTACCGAAATCTGAGACTTTGCTTTTTTAGACCCAAAACTGCCAAATGTTTTTTAAATGTTTTTTGGTTTTGTTTTTTTGAATATGTTTTTGACGAATGAGACGAATTTTTTTTTTGAGAAGTAAATTTCTATTAAAAAACAGTGCTTAATAAAAAGTAAAACCTATTACCTTTTCTAAGGAAAAAAAACCCTAAATTCCAAATATAGCAAGCTATAAACTTCGCAATCAAC
e caePb3.Scfld02_0     2079190 1388 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I
e caeRem4.Crem_Contig0  808611 876 -  4500979 I

a score=177.000000
s ce10.chrX            3696758 4 + 17718866 CATG
s caeRem4.Crem_Contig0  809487 4 -  4500979 CAGG
i caeRem4.Crem_Contig0 I 876 C 0
e caePb3.Scfld02_0     2079190 1388 +  4147112 I
e cb4.chrX             8847563 3814 + 21540570 I
e caeSp111.Scaffold630 5803847 2043 + 20921866 I

a score=9037.000000
s ce10.chrX            3696762 35 + 17718866 CACAAACATTCC-AAACTAAACCGCAAC----TGCGAAGC
s caeRem4.Crem_Contig0  809491 38 -  4500979 CACAAACATTCC-AAACTAATCCGCAACCAACTCCGAGC-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5805890 40 + 20921866 CACAAACATTCCGAAACTAATCCGCAACCTATTTCGAAGC
i caeSp111.Scaffold630 I 2043 C 0
s caePb3.Scfld02_0     2080578 37 +  4147112 CACAAACATTCC-AAACTTACTCACAACCAACTC--AAAG
i caePb3.Scfld02_0     I 1388 C 0
e cb4.chrX             8847563 3814 + 21540570 I

a score=2730.000000
s ce10.chrX            3696797 3 + 17718866 AAA
s cb4.chrX             8851377 3 + 21540570 AAA
i cb4.chrX             I 3814 C 0
s caeRem4.Crem_Contig0  809529 3 -  4500979 AAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5805930 3 + 20921866 AAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2080615 3 +  4147112 AAA
i caePb3.Scfld02_0     C 0 C 0

a score=200748.000000
s ce10.chrX            3696800 501 + 17718866  
s cb4.chrX             8851380 514 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  809532 487 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5805933 495 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2080618 492 +  4147112  
i caePb3.Scfld02_0     C 0 I 159
s caeJap4.Scaffold1521  105005 556 -   152914  
i caeJap4.Scaffold1521 N 0 C 0

a score=-20870.000000
s ce10.chrX            3697301  86 + 17718866 TTTGAAAATTCACTATGAATGCGGAGAATCGTGAATCTTTA---------ATTTTCTTTTTTGCAAGATGTC------ATTTTGGATTTTT-----TTTGCTTTGA-------------------------------------------
s cb4.chrX             8851894  71 + 21540570 ----CAATTTTACTACACATTTGGTGAACTGgaaat--------------------ctttttcaaaaacaaa------attttagagCTAC-----AAAGTTTTGA-------------------------------------------
i cb4.chrX             C 0 I 91
s caeRem4.Crem_Contig0  810019  68 -  4500979 ------ATTTTACTACAGATCTGA------GAAAAT--------------------TGTTTGCAGAAAAACA------AACTCAATGTCGCTTTGAACCATTTTTA-------------------------------------------
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 5806428  72 + 20921866 --------Cttaa-aaaaatctcaaga---gaaaat---------------gaggCTGACATCAAAAACAAACCAT--GTTTTGGAGTTAC-----TCCATTTCGT-------------------------------------------
i caeSp111.Scaffold630 C 0 I 4
s caeJap4.Scaffold1521  105561 132 -   152914 --------tttag-gtaaaaatgaagg---aaaaattaCTATTGTAGACCTGCCAcggcggtcaaacgcgctccgctgaatttagtgcttc-----gtggttttcattttggtttccaaattgtttCGTTTCATGttaaatttatacgt
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2081110 159 +  4147112 I

a score=-26985.000000
s ce10.chrX            3697387 134 + 17718866 GA----AGTCGTTTT-------------TATAATGTGTTTTCAG------ACAATGAAAATTC-------------AGAATAAAAAGTAGTACCGTATTTTCTCTAGTAG---------------TAAATTAGTCATTAATACCTTCAAAAT---------------------------------------------------------GAGCCGA----------GTTA---------------TACATGTCTTTTCAAAGTAAAG
s caeRem4.Crem_Contig0  810089  81 -  4500979 ------ATTGGT-TT-------------tgtgagattttttc-----------aaaaaaagga-------------aaaaaaggaaaaaat-----------tttaa-------------------------ctttttgttactctga--------------------------------------------------------------------------------------------------aaatgtctttaaA--------
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold630 5806504  97 + 20921866 TAAGCTAATGATACC-------------TGttcgcttttttcat------ttgatagaAAGGC-------------TTATAGTCGTCCAGT-----------TCCAG--------------------AATTCCTTATTGTTTCCCTCA--------------------------------------------------------------------------------------------------Acattttattct---------
i caeSp111.Scaffold630 I 4 C 0
s caeJap4.Scaffold1521  105693 252 -   152914 ga----aattgtTTCGACAATAAAAGAATACACCGTGTGTTGAAGGTACCccgatgcaaacgcgccccaattttgaaaattatcaagaaag-----------ttttatggtagtttacggttttttacatgccttattattattattaaaatttgcgtgactttctaaattttttttaaacctttccgcataaaaaaaattaattagtcgattcgaaacacttttcgttaaatcaacagaattgtttcatactttttcaatgaaaag
i caeJap4.Scaffold1521 C 0 I 240
e caePb3.Scfld02_0     2081110 159 +  4147112 I
e cb4.chrX             8851965  91 + 21540570 I

a score=282.000000
s ce10.chrX            3697521 3 + 17718866 TGA
s caeRem4.Crem_Contig0  810170 3 -  4500979 TGA
i caeRem4.Crem_Contig0 C 0 I 3
e caePb3.Scfld02_0     2081110 159 +  4147112 I
e caeJap4.Scaffold1521  105945 240 -   152914 I
e cb4.chrX             8851965 91 + 21540570 I
e caeSp111.Scaffold630 5806601 0 + 20921866 C

a score=0.000000
s ce10.chrX            3697524 12 + 17718866 GGTGCAATACTA
e caePb3.Scfld02_0     2081110 159 +  4147112 I
e caeJap4.Scaffold1521  105945 240 -   152914 I
e cb4.chrX             8851965 91 + 21540570 I
e caeSp111.Scaffold630 5806601  0 + 20921866 C
e caeRem4.Crem_Contig0  810173  3 -  4500979 I

a score=-55763.000000
s ce10.chrX            3697536 203 + 17718866 TTAGAGGAAGTATGGTTTACAACACAATA-------TAAGTTTTAACAAGATAATTAAAATTTTGTAT-----------CTTTCTACGACAAGTACATTTTTTAAAAA-------------TCATTTCTCCTCAA-------------------TGCACTA------------TTACCAATATAGGG--------TCTGCCCCCA--------------CTCGCTCCCTCTCGCTCTGCGTGTCGCTCTGCGCC------------------------------TAGCAAATAACCACATACCAACCAGAGTTATTT
s cb4.chrX             8852056 275 + 21540570 TCGAATAAAAAACGGTTTCCAACA-TTCATGCAATTTAATTTTCCCTGAATTTCTAATACCTTTTTATAGCATTCATGCTTTCCTATTCCtattcacttctt-------------------cttctctttttta---------------ctACTTgccccaaaatttcaaacgtcGCTCCAAAAAATGGAGGATAACTGCTGTTATAGAAGAGACGTAGAGCGCCAGCCGTCTCGCGGCCGGC-------CGACCCGACTCACACACAAACCAGCGTTCGTGGTTGGTAAATAAGTGCCATCGGTCTATGTCTCTCT
i cb4.chrX             I 91 C 0
s caeRem4.Crem_Contig0  810176 201 -  4500979 --------------TTTTCTAGAA-TTCA-------TAATCAT--ATGAA----CAAGGttttttcat-----------ctactgttttttaaacactttta-------------------ctaaacttttccaa----aatatacCACTCACCTTCCCCAATATTTTCCTC-TCACTCT---------------ACTGCAGTCA-AAATGACTCACACATTGTGGGGTCTCACAAGAGCGGC-------CGAC------------------------------TAGCAAATAACCGCATTCGCTCTCTTCCTCCAT
i caeRem4.Crem_Contig0 I 3 C 0
s caeSp111.Scaffold630 5806601 156 + 20921866 -------------------gaaga-agGA-------TAA------------------------------------------TTTTCTCACAAACCCTTCTATGTA----------------CCTTACCTCCAC------ATTACACTATTTCTTTACTGCA--------------GTCAAAAGAAATA-------AGTGCTGTCc--------------ccctttctttttcgttttgctTGCC-----GCGGC------------------------------AGAGATGTGACCGGCGTAGCACCTACCCACTCC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2081269 209 +  4147112 -------------------------GGCA-------TAATTCT--ATACA----Cgag----tttcaaattgttca---ttttttctaccTAATCTCTCCCTGAAAAAAGACAACCCCCGGCCTTACTTCTTCGAAGTAGGAACAACGtcttttttctgtg----tgttGAC-TCGCCCGCATGAGAG-------AGCGCGCTGC--------------CTCTCTCGCTCTCCCCGCGCCTGC-------TGGC------------------------------AAGCATAAAACCACACTCGCCCTATGTCCATCT
i caePb3.Scfld02_0     I 159 C 0
e caeJap4.Scaffold1521  105945 240 -   152914 I

a score=75197.000000
s ce10.chrX            3697739 127 + 17718866 C-GTGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCAATCTTTTTTGTTTTGTTTTTTTTAAA------------------------------------TGAATT----------------------------------------------------------------------TTGTTTGTTTTT--T-----TCAATC
s cb4.chrX             8852331 229 + 21540570 CAGCGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCAagcttttttgaatc-ttttttctggatttgtggaatggtttaattgaaacattttaacgttttgAGTTTCACTAATGGGTTTATCCCATTTTAATGTAAACTACCGGTCgataaaataaacaaaaatttattttcagtttatttatttttacc-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  810377 144 -  4500979 CGCCGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCAagcttttttag------ttttccaaatttg-----------aatcAGTAC---------TTCAGAGTT----------GTTTA-------------------------CGA-----------------------caatctcttcattttt--c-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5806757 114 + 20921866 CAGCGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCaagcttttttgt------ttttcagaa--------------------------------------agta----------------------------------------------------------------------tttttctttttt--c-----------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2081478 116 +  4147112 CGGCGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCAagcttttttgc------ttttctg-----------------------------------------gta----------------------------------------------------------------------ttgttcattttt--acaaTC------
i caePb3.Scfld02_0     C 0 I 155
s caeJap4.Scaffold1521  106185 127 -   152914 -CGTGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGgagcaattttttcttt------ttttttgta-----------------------------------gtcaGTT--------------------------------------------------------TATTTGTTGTCAGCTTTTTTAATC----------------
i caeJap4.Scaffold1521 I 240 C 0

a score=-21264.000000
s ce10.chrX            3697866  68 + 17718866 AGGGTTGG--------------------------------CACAGGTTT---------------GTAAAACTAGA-------CTTATGAACATCATTCCACCATTTTTGTTT---TTTATTTTAA
s cb4.chrX             8852560 122 + 21540570 atttttgaagagtcaagtttccaatcattttaaaattgttgaGGGTGTAAGACAAACCTAGAATTAGAATACATAGAATGTTTTAAAGCACGTTA---CGTTGAAGCTATCAACCGTTTTCTAAA
i cb4.chrX             C 0 I 19
s caeRem4.Crem_Contig0  810521  60 -  4500979 aatattga--------------------------------------------------------tTGAAAACATA-----TTCTCATACTCATCAATtaattatagttttta----ttttctacg
i caeRem4.Crem_Contig0 C 0 I 19
s caeSp111.Scaffold630 5806871  60 + 20921866 ----------------------------------------ggtgaTATA---------------TTGAGAATAGA-------TTAGAAAGTATAATTTTGTCAAAGTTTTgt---gttatttaaa
i caeSp111.Scaffold630 C 0 I 81
s caeJap4.Scaffold1521  106312  37 -   152914 ---------------------------------------------------------------------AACAAA-------TTTATATACCTATGTCTG--------ATCT---CTTTTTTGG-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2081594 155 +  4147112 I

a score=-18763.000000
s ce10.chrX            3697934 101 + 17718866 TTTCTAG---TAA------------------------TTTTTCTAATACT---------------TGTAAATTAGTTTTT-------CATGCTTCCCGAAG-----AATAATTCTAATTCTGATTACAAGCGTGGGAG-TAACGGGTCCC-----------------TGATTG
s cb4.chrX             8852701 165 + 21540570 ttttcagctttaaaaaaacattccgaAATGGGAGGATTTTTtaagaaatcggcaaaaaactgaaatgtgaatgcaattttcaaacaaggtctgttttatattctccaaaattttcaaagt-cattggaaacttga----caaccgaaCTCCAGACttcagaaaa---tggtca
i cb4.chrX             I 19 C 0
s caeRem4.Crem_Contig0  810600 119 -  4500979 tttctag------------------------------tttttttgaaacc--------ccataggtgtgttcgaaatttt-------ggtttttttaacAG----AAACAATTTCAACCCACATTTGACTCTTTGGCTCTAACTGAAGTT---ATTACAGAAAGC--TAATTA
i caeRem4.Crem_Contig0 I 19 C 0
s caeJap4.Scaffold1521  106349  88 -   152914 ----------------------------------------------------------ACACACTGGTGAAC------TT-------TGAGCGTCAGAAAGGGTAAAATGTACTCGAGTA-CATT-------TGGGCA-TAA--GGATGC---GAGACAAAGAGtcataattg
i caeJap4.Scaffold1521 C 0 I 146
e caePb3.Scfld02_0     2081594 155 +  4147112 I
e caeSp111.Scaffold630 5806931  81 + 20921866 I

a score=-4107.000000
s ce10.chrX            3698035 10 + 17718866 ---------------TGAGGAAAA-----------------------------------------T
s cb4.chrX             8852866 66 + 21540570 aaatgactgaaaattgaacgaaaaatACATGAGAATGATTTGACCGATACTGTATGTCCCCAACCT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  810719 34 -  4500979 AGtagtatttttttctaatgaaaataaGATG--------------------------------TCT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2081594 155 +  4147112 I
e caeJap4.Scaffold1521  106437 146 -   152914 I
e caeSp111.Scaffold630 5806931 81 + 20921866 I

a score=-3969.000000
s ce10.chrX            3698045 24 + 17718866 TTTCA----------ACAATGAATGTGCATGAGA-
s cb4.chrX             8852932 33 + 21540570 TTCCAATATTTATGAACGAAGAATCGGT-TCGAA-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  810753 21 -  4500979 TTTCA-------------TGGGGTTAGTGTTAGA-
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2081749 21 +  4147112 TTTCA-------------ACTATACGGT-CTGAAA
i caePb3.Scfld02_0     I 155 C 0
e caeJap4.Scaffold1521  106437 146 -   152914 I
e caeSp111.Scaffold630 5806931 81 + 20921866 I

a score=-49595.000000
s ce10.chrX            3698069 202 + 17718866 -------TTACGA-ATAATCACGGCAGATT---ACATTGTC--------TTTTTGTTTTCTAACAA------------AGCAAGATGAAAATAACGAAAGGAGCGTTGAAATTCGCGCTAATGAGCATTTTTGCCACCATCTCATTCTTCTCACCTA------CAA----ATATCGATATGCGTTGAATTTTCATAA--TTT---------TCTTGTCA--TTTCC------------GCACAGCTCACCTACACA------------------------------------TGCT-CACTTATT
s cb4.chrX             8852965 263 + 21540570 TAACATATTTTGT-acga---aaaaagctcaaaaaattccagtcagttgttttttcttatcaacACGGGCATTTTGTTAGTAATAGTAAA--AACAAGAGAG--------ACTC---CTAATGAGCTGTTTTG-------------TTACACAACCCCTCCTGTAAACCCATACCTATGTT---TTACTTCTCTCGA--GTT----TACAGTCTTGtga---tttctttttcgaatttccaaaaacttccaaaatagttagcaaaaactttatttcaaaaaaagtcgcGCAACTCTGCgtaaatt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  810774 162 -  4500979 TTACA---------ACCA---AGTGAGATT---ATATTGC---------TTTCTCCTGAACCACAC------------AACACGGTTATA--AATGAAAG----------------------GAGTAGGTT-------------------ACAACTC------TAAATTAACA-----------TGACTTCTTTTGA--GTT---GTGCA----TGtgagttttccttttttaactggtctcaagttttgaatat-------------------------------------CTCT-CGCGAATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5807012 230 + 20921866 -------TTACGT-GCAATTGTAGAAGATt---tagtcgt---------tttttcttgttttccag------------agaaatg-tgaa--aacaagaaaaaaggttacACGA---CTAATGAGCACTCTTCTC-------TGTTTGGCATACCTT------CAATTACGTCTCGAAAAC---CTACCAAtctt----gttcattttcagttttccca--CTCTCAGTTTCAAGCGAGCacgttttttccagaaa--------------atttaCTATAAATTTTCCACATTCCT-CATAAATT
i caeSp111.Scaffold630 I 81 C 0
s caePb3.Scfld02_0     2081770 225 +  4147112 -------TTGTGTCGcgttttcacaaaata---ttGTTGC---------TTGTTGTTTTATT-------------------------------GCCAAAAACAACGTTTTACAC---GTAATGGGCATTA----------------TGTCCAACCTG------AAATTTAGCAACGAAAACTGATCAACAATCCTAATAATTCAGATGCtctccgccca--ttttcagtttcaaacgaccagtaattttcttgaaattcatctgaaa--gttttaCTATGAATTTTCCACATTCCT-CATAAATT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106437 146 -   152914 I

a score=130979.000000
s ce10.chrX            3698271 217 + 17718866 TA--AAAGATTTACGTCAAAA----------------TCGTTG---AAAGATAGCGTGTAGTGGCGCAGGGGA------GAGAATCCGGAAG-ATA----TTTGCCATATCTGTG--CATGTGTCCTTTGACGAATGTTTTT--------TCATGATGCGATCA-TTTCATCGTCAAAAATAGGCATG-------TTGAGAAGGAAGGAA-------GGC--------------GGCGAGAATATCTA--------TGATATGTTCAAGTTGAGATATTTCTTC----AATCATACTTGA
s cb4.chrX             8853228 250 + 21540570 catgaaaaattcacATTGAAA----------------TCACTT---GAGAATTGCGTGTAAAG---------A------GGAAA-CCGGAAGAATATACTTCTTTGATATCTGTGCACATATGTCCTTTGACGAATGTTTTccttgatgatgatgatgcgaTGA-TT---TTGTCGAAAATAGGCATG-------TCAAAGAGGAAGATAGAGATGATGCTCCTCGCAAGTAG-TAGGAGGATATTTAGAGGTGTCTCGTATGTTCAAGTTGTGATATTTCCTG---TGCCTATACTTGA
i cb4.chrX             C 0 I 23
s caeRem4.Crem_Contig0  810936 217 -  4500979 TATGAAAGATGTACGTAAAAA----------------TCATAG---GAAGATGGCGTGTAAAG---------A------AGAAA-CCGGAAGAATA----TTTGCGATATCTGTG--CATGTGTCCTTTGACGAATGTTTTC----------ATGATGCgatca-tt---tcttcaaaaataggCA---------------AGGAAGAGATGCAAGATGC----------TAG-TAGAGGGATATTTAGAGGTGTCTCATATGTTCAAGTTGTGATATTTCCTT--CCAATCATACTTGA
i caeRem4.Crem_Contig0 C 0 I 8
s caeSp111.Scaffold630 5807242 220 + 20921866 CATGAAAGATTTACGTCAAAA----------------TCGTTT---CAAGATAGCGTGTAAAG---CAATGAA------GAGAA-CCGGAAG-ATA----TTTGCGATATCTGTG--CATGTGTCCTTTGACGAATGTTTTT----------ATGATGcgatcattt---tcttcaaaaataggcATG-------TGAAGGAGGAAGATA------------------------TGGAGAAATAACTAGAGGTATCTCCTATGTTCAAGTTGTGatatttttccttcaaatcaTACTTGA
i caeSp111.Scaffold630 C 0 I 7
s caePb3.Scfld02_0     2081995 231 +  4147112 CATGAAAGATTTACGTCAAAA----------------TCGTTT---CAAGATAGCGTGTAGAG---CAATGAAGAGAGTGAGAA-CCGGAAG-ATA----TTTGCGATATCTGTG--CATGTGTCCTTTGACGAATGTTTTC----------ATGATGCgatca-tt---tcttcaaaaataggcACA-------ccgaagaggaagagg------atgc----------TAGCCAAAGGAATAACTAGAGGTGTCTTATATGTTCAAGTTGTGATATTTGCCC--CCAATCATACTTGA
i caePb3.Scfld02_0     C 0 I 11
s caeJap4.Scaffold1521  106583 235 -   152914 --TAGAAGATTTACGTCAAAATTCTACTTCTTCCTCCTCGTTTTCCGACGATGGCGTGTAGAA----------------------CCGGAAG-ATA----TTTGCGATATCTGTG--CATGTGTCCTTTGACGAATgctttt-------ttcatgatgcaatcA-TC---AACTCTAAAATAGGCATAGGCATGTCCAGAAAGGGaaaaa---aaGATGC----------AAA-AAGGAAGAGATGTGGGGGCCTC-----TGTTCAAGTTGTGATATTTCTTC----AATCATACTTGA
i caeJap4.Scaffold1521 I 146 C 0

a score=-4040.000000
s ce10.chrX            3698488 28 + 17718866 ---------------CGCTTGCTGGTCACTGGCGAAATTCACC
s caeRem4.Crem_Contig0  811161 12 -  4500979 ---------------AAGAAGTCGGTC----------------
i caeRem4.Crem_Contig0 I 8 I 2
s caeSp111.Scaffold630 5807469 16 + 20921866 ---------------AAGTTGTTggtcattt------------
i caeSp111.Scaffold630 I 7 C 0
s caePb3.Scfld02_0     2082237 16 +  4147112 ---------------AAGTCGTTggtcactt------------
i caePb3.Scfld02_0     I 11 C 0
s caeJap4.Scaffold1521  106818 28 -   152914 TGCCTAGGGTGAGTGAAGAAGT--GTCGCC-------------
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8853478 23 + 21540570 I

a score=32030.000000
s ce10.chrX            3698516  964 + 17718866  
s cb4.chrX             8853501 1331 + 21540570  
i cb4.chrX             I 23 I 304
s caeRem4.Crem_Contig0  811175  920 -  4500979  
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold630 5807485  942 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2082253 1074 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  106846 1218 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=1642.000000
s ce10.chrX            3699480 22 + 17718866 C----GCAATGGATAATCTCAGATTT
s caeRem4.Crem_Contig0  812095 25 -  4500979 -ATTGTGAACAGATGATCTCGGATTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5808427 21 + 20921866 -----AACCCGGATAATCCCAGAATT
i caeSp111.Scaffold630 C 0 I 138
s caePb3.Scfld02_0     2083327 18 +  4147112 -----GGCGAGGATGATCTCAGG---
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  108064 21 -   152914 -----CAGAAGGATCATCCTGGATTG
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8854832 304 + 21540570 I

a score=182.000000
s ce10.chrX            3699502 2 + 17718866 TA
s caeJap4.Scaffold1521  108085 2 -   152914 TA
i caeJap4.Scaffold1521 C 0 I 242
e caePb3.Scfld02_0     2083345 0 +  4147112 C
e cb4.chrX             8854832 304 + 21540570 I
e caeSp111.Scaffold630 5808448 138 + 20921866 I
e caeRem4.Crem_Contig0  812120 0 -  4500979 C

a score=-1470.000000
s ce10.chrX            3699504 82 + 17718866 AGGATATTTATTAAAACAAATCAACGTCAGCGAGGCGTTTTCGATATTCTTAGTATTTGAACTGGTTTTTTTTTGGTTCGAA
s caeRem4.Crem_Contig0  812120 43 -  4500979 ----CATTGAT---CATAATCCAAT--------------------------------CCGATAGATTTTGGTTTGGTGTCAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2083345 61 +  4147112 -----ATTTCTTTATATAATCCACCGTT----AAGTGTGT------------GTGTGCCAGTTGGTTTTATCTTGTTTTGAA
i caePb3.Scfld02_0     C 0 I 116
e caeJap4.Scaffold1521  108087 242 -   152914 I
e cb4.chrX             8854832 304 + 21540570 I
e caeSp111.Scaffold630 5808448 138 + 20921866 I

a score=-7363.000000
s ce10.chrX            3699586 554 + 17718866  
s caeRem4.Crem_Contig0  812163 204 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2083406 116 +  4147112 I
e caeJap4.Scaffold1521  108087 242 -   152914 I
e cb4.chrX             8854832 304 + 21540570 I
e caeSp111.Scaffold630 5808448 138 + 20921866 I

a score=0.000000
s ce10.chrX            3700140 13 + 17718866 AAACTGCATAATT
e caePb3.Scfld02_0     2083406 116 +  4147112 I
e caeJap4.Scaffold1521  108087 242 -   152914 I
e cb4.chrX             8854832 304 + 21540570 I
e caeSp111.Scaffold630 5808448 138 + 20921866 I
e caeRem4.Crem_Contig0  812367  0 -  4500979 C

a score=7222.000000
s ce10.chrX            3700153 99 + 17718866 CAATGATCTTTGAAACTCCTCCTAGAAACATCGTTTCCAATAAAATATCTCTCAAAGATGAGTCGACAATTATTACAAGCCGC------ATAAAAATAGCTTTAT
s caeRem4.Crem_Contig0  812367 66 -  4500979 -AATGATCTTTGACACCTTTT----------------CTCTTAAACATCTCTCATAAA-----AAGCACTTATTCTGAGCTTCtttat-----------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5808586 85 + 20921866 CAATGATCTCTGACACTCTGT---------------CCCTTCATATTTCTCTCTGGGG-----AGGCACTTATTCTGAGATTCTTATTCATCAAGTTGACTTGAT
i caeSp111.Scaffold630 I 138 C 0
s caePb3.Scfld02_0     2083522 82 +  4147112 CAATGATCTCTGACGCTCTCT----------------CATAAAAAGTTCTCTCTAGG-------GGCACTTATTGTGagctttcttttcatcaacttGACTTGAT
i caePb3.Scfld02_0     I 116 C 0
e caeJap4.Scaffold1521  108087 242 -   152914 I
e cb4.chrX             8854832 304 + 21540570 I

a score=2229.000000
s ce10.chrX            3700252 42 + 17718866 AAGATTAT--TTCTTGCCTTTTCCTTCTTAGTCC---TACTCTGAAA
s cb4.chrX             8855136 32 + 21540570 AAAATAAT--TGCTATCctctc----------cccttttttctt---
i cb4.chrX             I 304 C 0
s caeRem4.Crem_Contig0  812433 45 -  4500979 aaaattat--ttttttcttttccatctcgcctcccttttctcatcaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5808671 44 + 20921866 AAAATTACTGCCTCCTCCCTTCGTTTTT---GGCCTTCtctctaaaa
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2083604 45 +  4147112 AAGATTAT--CCTCCCCCTTGTGgttcttccttccttttctctcaaa
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  108087 242 -   152914 I

a score=27453.000000
s ce10.chrX            3700294 200 + 17718866 ATTT----------------TTATTTCTTCAGAAAATACAGCTCCTACGGAATAGAAGCACCTACTCCAATCGGTATACCAAGTGAAG------AACAG----AAA-----AGTCCAGAACGGTCTCCTTCAATTACTTATAATACACGACAACCTGTCAGGAGTCTGTCTGCTGGGTGGAAGGAATCGTTCAGGGTA--------------------------------------------------------------------------------------------------------------------TTGTTTTTGTATAGTTCTCAATAACTG----------------------------------TTTTT----------A
s cb4.chrX             8855168 367 + 21540570 --tttttacttaTATTCTTCTCCTT--TCCAGAAAATACAGCTCCTACGGTATCGAGTCCCCTATTCCAATTGAGTTACCTTGCTCATCGTCACAACCG------------GAACCCGAGCGATCTCCATCGATTTgct---attcaaaaaaacctGTTCGAAGCTTATCAGCCGGGTGGCGAGAATCGTTCAGAGTAAGCGTACAAAGAGTCACTGTaagattttctagtttttttgaaaaatcgtttttgaaaatgcggtTTTCTTAGTTAGTGGTCAGGTTTCTTGAAATAGCCTTCGTGTGAGATGATTTTTCTTTGTGCAT----CCAATTAACCA-ACTCAATCGCATTTTTGAGAATGGTTATCCTCCAATCTTAAACACAAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  812478 209 -  4500979 agtcatctcttctattttcatttttgatacagaaaataCAGCTCTTACGGTGTTGAGTCTCCTATCCCTATTGGAATTTCTGGCGGAG------AAGAA------------GTTCCAGAAAGATCGCCTTCTATTTCTT---ATACCCGCCAACCTGTAAGAAGTCTGTCGGCTGGTTGGAAAGAGTCATTTCGGGTAAGC------------------------------------------------TTGAGAA----------------------------------------------------------TTACTTATGCA-------AATTAA-------------------------------------AATT-----------A
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5808715 210 + 20921866 atgttttcat-----ccatattttttcttcagaaaatacaGCTCCTACGGTATCGAATCTCCTGTTCCTATTGAAATCTCAGTTGGAT------TATCACCTGAAACACCTGCAGCAGAAAGATCTCCTTCAATTACAT---ACACAAGACAACCTGTAAGAAGTCTGTCAGCTGGTTGGAAAGAATCTTTTAGGGTAAG------------------------------------------------------Aa----------------------------------------------------------ccattcattttc----caaa-----------------------------------------attct----------g
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2083649 200 +  4147112 aattacTTATTTta-cctcatcttcttctcagGAAATATAGCTCGTACGGAATCGATAATCCAGTTCCTATTAATATTT---GTGGAT------TGCAA------------GCCCCAACAAGATCTCCATCAATCACTT---ACCAAAGGCAACCTGTAAGGAGTTTGTCAGCTGGTTGGAAAGAGTCGTTCAGGGTATGT------------------------------------------------TTCTCAA----------------------------------------------------------CCAAT-GTGCTC-------------------------------------------------GTTCT----------A
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  108329 200 -   152914 --------------ACCTTTTCTTT--TCCAGGAAGTACAGCTCATACGGAGTAGAGGCGCCCATTCCTATCGGGATCTCTGGCTCTG------AGGAG------------TTACAAGAAAGGTCTCCGTCCATATCAT---ATGTGCGACAACCTGTACGAAGTTTGTCCGCAGGTTGGAGAGATTCTTTTCGGGTAGGT------------------------------------------------------A----------------------------------------------------------ATATGtatttat----caaattttttacagtct----------------------------atttt----------a
i caeJap4.Scaffold1521 I 242 I 211

a score=90224.000000
s ce10.chrX            3700494 142 + 17718866 ATTTTTTTCAAAAGTTTATAGAGAAAGCTCAACATTTTCCGGCGGCCCAGTCCATCTTCATTAAGCTCCCGTTCAACTCAACATTTTCTATCGCCCAGTCCTGAAATGTCCTGCAAAACGAATCAAGAATCTGTGAAGGTAA
s cb4.chrX             8855535 140 + 21540570 gtgttttttctta--tttcagaGGAAACTAAACGTGTTCCGAAGAGCCAGTCCATCCACACTGAGCACGCGTTCAACTCAACAATTCTTGGTTCCAAGTCCAGAAATGTCGTGCAAATCAAATCCAGAAACTGTCAAGGTGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  812687 132 -  4500979 GTATT----------TTACAGAGAAAACTAAACATATTCCGAAGACCCAGTCCATCTTCACTAAGTTCTCGGTCTACTCAACAGTTCCTATCGCCAAGCCCAGAAATGTCGTGTAAATCGAATCCAGAAGCAGTAAAAGTAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5808925 133 + 20921866 aTACTTTT-------T--CAGAGGAAACTAACTTTTTTCCGGCGGCCGAGTCCTTCATCTCTGAGTTCTCGTTCAACCCAACAGTTTCTATCCCCAAGTCCAGAGATGTCTTGCAAATCAAACCcagaagttttgaaagtAT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2083849 135 +  4147112 ATGCTTTT-------TTCCAGCGAAAACTGAATTATTTCCGAAGGCCAAGTCCATCTTCATTGAGTTCCCGTTCAACACAACAGTTCTTAACACCAAGCCCAGAAATGTCTTGTAAATCTAACCCAGAACCCGCCAAAGTAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  108740 133 -   152914 --attttt-------tttaagaaaaaaatgaacatcTTCCGGAGGCCAAGTCCATCTTCGCTCAGCTCCCGCTCAACGCAACAGTTTCTTACGCCTAGTCCGGAACTGACGTGTAGATCAGAAACAAACACGCTGAAGGTGA
i caeJap4.Scaffold1521 I 211 I 242

a score=-11745.000000
s ce10.chrX            3700636 39 + 17718866 -TACAAAATTTTTTATTATGTTTTAAAAAAGCATA----------TAGAA
s cb4.chrX             8855675 31 + 21540570 -------------------TCTGTGACTAATGACTTATTTTCAACTAGAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  812819 37 -  4500979 GGAAACGGTTTTGAAC-GTCCTACGACTAACAACTT---------TA---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5809058 30 + 20921866 ------GAGTTATCAT--AAGAATGACTAATTA------------TTGAC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2083984 32 +  4147112 ------AGTTTGAAGTTGAGCGATGAGTAATCA------------TTGAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  108873 242 -   152914 I

a score=93816.000000
s ce10.chrX            3700675 89 + 17718866 AATTCCAGATGAAAAAGTCCATCTCCTTCAGTGAAACCACTCGCAATGCACTACGTCGATCGTTTCGTCACAAAGTTAG-TTGTTTGTTT
s cb4.chrX             8855706 89 + 21540570 AATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCGTTCCGCCGATCGTTTCGTCAAAAAGTTCG-TTGTTTTTCT
i cb4.chrX             C 0 I 1521
s caeRem4.Crem_Contig0  812856 89 -  4500979 AGTTATAGATGAAAAAGTCAATCTCGTTCAGTGAAACAACTCGCAATGCGCTCCGCCGATCGTTCCGTCAGAAAGTTTG-TTATTTATTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5809088 89 + 20921866 AATTGCAGATGAAAAAGTCGATATCATTCAGTGAGACCACTCGCAATGCACTTCGCAGATCATTTCGTCAAAAAGTTAG-TTGTTTGTTT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2084016 89 +  4147112 AATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCACTTCGCAGATCGTTCCGTCAAAAAGTTAG-TTGTTTGTTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109115 90 -   152914 AATTGCAGATGAAAAAGTCAATATCATTCAGTGAAACAACTCGCAACGCACTACGAAGATCATTCCGTCATAAAGTGAGTTTGTTTGTGG
i caeJap4.Scaffold1521 I 242 C 0

a score=2115.000000
s ce10.chrX            3700764 3 + 17718866 ACT
s caeRem4.Crem_Contig0  812945 3 -  4500979 GCT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5809177 3 + 20921866 GCT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2084105 3 +  4147112 GCT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109205 3 -   152914 ACT
i caeJap4.Scaffold1521 C 0 I 148
e cb4.chrX             8855795 1521 + 21540570 I

a score=-527.000000
s ce10.chrX            3700767 5 + 17718866 GTTGA
s caeRem4.Crem_Contig0  812948 5 -  4500979 TTCAA
i caeRem4.Crem_Contig0 C 0 I 192
s caeSp111.Scaffold630 5809180 5 + 20921866 TTTGC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2084108 5 +  4147112 TGAGC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I

a score=1289.000000
s ce10.chrX            3700772 12 + 17718866 ACTCTCAGGGCA
s caeSp111.Scaffold630 5809185 12 + 20921866 TCTTCCAGGGTC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2084113 12 +  4147112 ACTGTTAGGGCA
i caePb3.Scfld02_0     C 0 I 236
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I
e caeRem4.Crem_Contig0  812953 192 -  4500979 I

a score=327.000000
s ce10.chrX            3700784 8 + 17718866 AAGATCTT
s caeSp111.Scaffold630 5809197 8 + 20921866 AATCTCTT
i caeSp111.Scaffold630 C 0 I 252
e caePb3.Scfld02_0     2084125 236 +  4147112 I
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I
e caeRem4.Crem_Contig0  812953 192 -  4500979 I

a score=0.000000
s ce10.chrX            3700792 839 + 17718866  
e caePb3.Scfld02_0     2084125 236 +  4147112 I
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I
e caeSp111.Scaffold630 5809205 252 + 20921866 I
e caeRem4.Crem_Contig0  812953 192 -  4500979 I

a score=551.000000
s ce10.chrX            3701631 7 + 17718866 ATCGGCC
s caeRem4.Crem_Contig0  813145 7 -  4500979 ATCGACC
i caeRem4.Crem_Contig0 I 192 C 0
e caePb3.Scfld02_0     2084125 236 +  4147112 I
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I
e caeSp111.Scaffold630 5809205 252 + 20921866 I

a score=546.000000
s ce10.chrX            3701638 2 + 17718866 AA
s caeRem4.Crem_Contig0  813152 2 -  4500979 AA
i caeRem4.Crem_Contig0 C 0 I 2
s caePb3.Scfld02_0     2084361 2 +  4147112 AA
i caePb3.Scfld02_0     I 236 C 0
e caeJap4.Scaffold1521  109208 148 -   152914 I
e cb4.chrX             8855795 1521 + 21540570 I
e caeSp111.Scaffold630 5809205 252 + 20921866 I

a score=4848.000000
s ce10.chrX            3701640 11 + 17718866 GAACGCTTCTT
s cb4.chrX             8857316 11 + 21540570 GAACGCTTCTT
i cb4.chrX             I 1521 I 2
s caeRem4.Crem_Contig0  813156 11 -  4500979 GAACGTATCTT
i caeRem4.Crem_Contig0 I 2 I 1
s caePb3.Scfld02_0     2084363 11 +  4147112 GAACACTTCTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109208 148 -   152914 I
e caeSp111.Scaffold630 5809205 252 + 20921866 I

a score=72.000000
s ce10.chrX            3701651 2 + 17718866 CA
s cb4.chrX             8857329 2 + 21540570 GA
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  813168 2 -  4500979 GG
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold630 5809457 2 + 20921866 CA
i caeSp111.Scaffold630 I 252 C 0
s caePb3.Scfld02_0     2084374 2 +  4147112 CA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109208 148 -   152914 I

a score=154794.000000
s ce10.chrX            3701653 466 + 17718866  
s cb4.chrX             8857331 490 + 21540570  
i cb4.chrX             C 0 I 409
s caeRem4.Crem_Contig0  813170 476 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5809459 453 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2084376 459 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109356 490 -   152914  
i caeJap4.Scaffold1521 I 148 C 0

a score=-1240.000000
s ce10.chrX            3702119 1 + 17718866 -C
s caeRem4.Crem_Contig0  813646 1 -  4500979 -c
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5809912 1 + 20921866 -c
i caeSp111.Scaffold630 C 0 I 16
s caePb3.Scfld02_0     2084835 1 +  4147112 -c
i caePb3.Scfld02_0     C 0 I 512
s caeJap4.Scaffold1521  109846 1 -   152914 G-
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8857821 409 + 21540570 I

a score=282.000000
s ce10.chrX            3702120 3 + 17718866 TTC
s caeJap4.Scaffold1521  109847 3 -   152914 TTC
i caeJap4.Scaffold1521 C 0 I 206
e caePb3.Scfld02_0     2084836 512 +  4147112 I
e cb4.chrX             8857821 409 + 21540570 I
e caeSp111.Scaffold630 5809913 16 + 20921866 I
e caeRem4.Crem_Contig0  813647 0 -  4500979 C

a score=-2760.000000
s ce10.chrX            3702123 41 + 17718866 GCAGTAAAGTTTTCGATCGCA----ATTTTTGTT-------CCATTTTATTA--------
s caeRem4.Crem_Contig0  813647 36 -  4500979 -aattttattattgaac--------AGTTCAGTT-------TCACTTAATTA--------
i caeRem4.Crem_Contig0 C 0 I 496
s caeSp111.Scaffold630 5809929 57 + 20921866 ---tcCGATTACTCAATTGCctgtgaatttttttaagaaGATCATTGAAACACCTTGtcc
i caeSp111.Scaffold630 I 16 C 0
e caePb3.Scfld02_0     2084836 512 +  4147112 I
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I

a score=867.000000
s ce10.chrX            3702164 164 + 17718866 TAGTTTTGAGCGATATATTTATG----GTTCATAATGTTGAGCACTACACGAATTTTTTCAAAAATGCTATATTTTCTGACGGTTCAAAATTTCGAAAAA------AAAAACAAGT-----TATCTAAAATCTCTAATTTTCAAAGTGTGTAATTTGC------AAAAGCTAATACGTAATGAAG
s caeSp111.Scaffold630 5809986 167 + 20921866 catttttgaaagtt-tgtTGCTGTTTTGTTCgtgatatca--------------tttttctgttat-cgatattttccaaaacttcaaa-ttccaaattatAGGTTAAGAACAAATGTCTCTATATGAAATATATATTTCTCTAAGT-TGCGGTTTGTATCTATACCCGCCAAAACCTAATGACG
i caeSp111.Scaffold630 C 0 I 26
e caePb3.Scfld02_0     2084836 512 +  4147112 I
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I
e caeRem4.Crem_Contig0  813683 496 -  4500979 I

a score=0.000000
s ce10.chrX            3702328 70 + 17718866 TATGATTCCTAGATAAGTCCCATTATGAAATTAGCTCCGTCAAACTCATTTTGAGTTCTATGCACCTACA
e caePb3.Scfld02_0     2084836 512 +  4147112 I
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I
e caeSp111.Scaffold630 5810153 26 + 20921866 I
e caeRem4.Crem_Contig0  813683 496 -  4500979 I

a score=-6437.000000
s ce10.chrX            3702398 734 + 17718866  
s caeSp111.Scaffold630 5810179 352 + 20921866  
i caeSp111.Scaffold630 I 26 C 0
e caePb3.Scfld02_0     2084836 512 +  4147112 I
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I
e caeRem4.Crem_Contig0  813683 496 -  4500979 I

a score=593.000000
s ce10.chrX            3703132 28 + 17718866 TTGACAATTGCTAGAAAACATCAGACGA
s caeSp111.Scaffold630 5810531 18 + 20921866 -----ACTTGTT--AAGACACCA---AT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085348 23 +  4147112 TTGTCAGTTTCT--AAGACACCA---AC
i caePb3.Scfld02_0     I 512 C 0
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I
e caeRem4.Crem_Contig0  813683 496 -  4500979 I

a score=7064.000000
s ce10.chrX            3703160 31 + 17718866 CAATTCTAGAC-GAGTCCTCCA--TTTTTGAAAA
s caeRem4.Crem_Contig0  814179 31 -  4500979 CAATTCTAGAC-GCcttcttcccatttttgaa--
i caeRem4.Crem_Contig0 I 496 C 0
s caeSp111.Scaffold630 5810549 30 + 20921866 CAATTCCAGACGGcctcctttt--ttgttgaa--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085371 29 +  4147112 CAATTCAAGAc-gccttctttt--ttgttgaa--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109850 206 -   152914 I
e cb4.chrX             8857821 409 + 21540570 I

a score=244.000000
s ce10.chrX            3703191 12 + 17718866 TTCGTACCCTCC
s cb4.chrX             8858230 12 + 21540570 ttcagaacttcc
i cb4.chrX             I 409 C 0
s caeRem4.Crem_Contig0  814210  3 -  4500979 ---------ctc
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5810579  3 + 20921866 ---------cCC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085400  3 +  4147112 ---------ccc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109850 206 -   152914 I

a score=163985.000000
s ce10.chrX            3703203 239 + 17718866 TAATGTTCGTGTGACACGC------------GAAAACACAATCAAGGCGGGCGCTGCTGCACCAGTGG-----------------------GGATGTCAGCCGTTTTGTTCTC-----------CTCTTATCCCCACATGTC-GGTACTGTGAAGTGGTCTACACAAAACTC-AACGGCTCTCAATCTCACAAGTTAGCTGAACTGTTTGTACAAGGGGCACCATTC--GAATTTTG------GCTGCCGCC--GCATT---------CTCCTCTTGCTAAGCTCACTTTCAAGCGGTAAGAGTTT
s cb4.chrX             8858242 281 + 21540570 aaatGATCTTTTGACACGC------------AAAAAGACAATAAAGGCGGAGCAAC---CACAATTGGAGGGGACAATGTTATAGACCCCGGGAGactttttccttgtttctctCCTGTGTCGATCCTCCTTCTG---TGTCGGGTATTGTTAAGTGGTCTACACAAAACTCAAACGGCTCTCAATCTCACAAGTTAGCTGAACTGTTTGAACAA---GCACCATTC--GGATGTTAGGGGTTACTGCTGCC--GCCTTATCCCTCCCCTGTTGCTGCTAAGCTCATTTTCCAGCGGTAAGAAACT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  814213 235 -  4500979 TAATGCTCTTTTGACACGC------------GAAAACACAATCAAGGCGGGCGGAG---CACC----------------------ACACTGGGATGTTAGCCTTTTGTTTCTC------------CCTTCCCCGT---TGTC-GGTACTGTGAAGTGGTCTACACAAAACTC-AACGGTTCTCAATCTCACAAGTTAGCTGAACTGTTTGAACAA---GCACCATTC--GATTTTTG---------GCTGCC--GCCTTA-CCATTGCATCCTTCTGCTAAGCTCACTTTCCAGCGGTAAGGATCT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5810582 235 + 20921866 TAATACTCTTTTGACACGC------------AAAAACACAATCAAGACGGGCGGAGC--CACCAGT-------------------------CTATGTTAGCC-TTTGTTTCTC---------------TATCCGT---TGTC-GGTACTGTGAAGTGGTCTACACAAAACTC-AACGGCTCTCGATCCCACAAGTTAGCTGAACTGTTTGAACAA---GCACCATTCGGGATTTTTA------GCTGCTGCC--GCCTTactctcctccttcttctgctAAGCTCACTTTCCAGCGGTAAGGATCT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085403 235 +  4147112 TAATGCTCTTTTGACACGC------------AAAAACACAATCAAGGCGGGCGGAG---CATCAGT-------------------------GGATGTTAGCCTTTTGTTTCTC---------------TATCCGT---TGTC-GGTACTGTGAAGTGGTCTACACAAAACTC-AACGGCTCTCAATCTCACAAGTTAGCTGAACTGTTTGAACAA---GCACCATTC--GATTTTTG------GCTGCCGCCTTACCATACTCCCCTCCTTCTTCTGCTAAGCTCACTTTCCAGCGGTAAGGATCT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  110056 221 -   152914 TAACGATCTTTTGACACGCaacaaacaaaagaaaaacacaatCAAGGCGG----AG---CATCAGT-------------------------GCCTGTTGGTC-TTAGTTTCGC---------------------T---CTTC-GGTACTGTGAAGTGGTCTCCACAAAACTC-AACGGCTTTCAATCTCACAAGTTAGTTGAACTGTTTGAACAA---GCCCCATCC--AATTCTTA---------CCTGAC--GTTTTAATACT---ATCTATCGGCTGAACTC-------AGCGGTAaggattt
i caeJap4.Scaffold1521 I 206 I 111

a score=34285.000000
s ce10.chrX            3703442 54 + 17718866 TCCACGG-----------------TTCCCACGTTTGCCATGTAATTTGACGACTTTGTC-------AGTTCTGTCATT
s cb4.chrX             8858523 78 + 21540570 CGTAGTGGTGAGGAGCAAATCTTTTTCCCACATTTACGATGTAATTTGACGATTTCGCCTTTCTCAAGCACCGTTATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  814448 61 -  4500979 CGCGACA-----------------TTCCCACGTTTACCATGTAATTTGACGACTTGGCCTTTCTCAAGCACTGTTATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5810817 61 + 20921866 CAAAACG-----------------TTCCCACGTTTACAATGTAATTTGACGACTTAGCCTTTCTCAAGCACTGTTATT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085638 61 +  4147112 CAAGACG-----------------TTCCCACGTTTACGATGTAATTTGACGACTTTGCCTTTCTCAAGCACTGTTATT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  110277 111 -   152914 I

a score=14081.000000
s ce10.chrX            3703496 605 + 17718866  
s cb4.chrX             8858601 752 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  814509 723 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5810878 675 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2085699 613 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  110388 763 -   152914  
i caeJap4.Scaffold1521 I 111 I 546

a score=14003.000000
s ce10.chrX            3704101 68 + 17718866 AGAAATTTGGTGCTTTCAGT------GTCTTATCTATTCTGACAAGTCGAGAGGATC-----------TGATTTTCGATCTTACT-
s cb4.chrX             8859353 63 + 21540570 agaag-agaagac-gTCAGATCCACTGTGTTATCTGTTCTGACAGCT-------AGC----------GCGATTCttgatctt----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  815232 75 -  4500979 AGAAG-TTGGTGC-TTCAGG------GTCTTATCTATTCTGACACCTCGAGA--AGCACACAAGTTGGCGATTCTTGATCTTACT-
i caeRem4.Crem_Contig0 C 0 I 480
s caeSp111.Scaffold630 5811553 65 + 20921866 AGAAG-TTGCCGC-TCCACG------ATCTTATCTATTCTGACATCTCAAGAGTAGC----------TCAgtttgtgatttt---t
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2086312 64 +  4147112 AGAAG-ATGGTGC-TCCAAG------ATCTTATCTATTCTGACACGTCGAGAAGAAA-----------CGATTTCTGATCTT---T
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I

a score=-3343.000000
s ce10.chrX            3704169 18 + 17718866 GCTTTGATTCTCTACTGT
s cb4.chrX             8859416 17 + 21540570 -ttttgtttttcagcagT
i cb4.chrX             C 0 I 492
s caeSp111.Scaffold630 5811618  7 + 20921866 gatctac-----------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2086376 14 +  4147112 GTTGGATTTTT-AGC---
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=-6497.000000
s ce10.chrX            3704187 124 + 17718866 GGTTGGAT-TCAGTTGTCGAAGATTACGGAACTTTTTTTCTCTTTTAGTTAAGAAGTCTAACCGATTTTTAAAAATTTAGTTTTGCTTCCATTAATAAGATTTTCAA--AAAAAAATT----GTTTGCCTT------------
s caeSp111.Scaffold630 5811625  77 + 20921866 ---------ttcGTTACCGATGA----------------------CAG----------TAACCCA-----Actgattt--tcttgattcca--aAGCGCGTCTACTTTCATAGAAATC----AGCTGCTCT------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2086390 124 +  4147112 AGGAGggtattcttttcaaataattttgagtttttttggaaacttcag----------TAACCCATGTTTGATATTTA--TCTTGGT-------AGATGTTTTTCTATTATAAGCATCTTTGAACAGTACTGTAGTCTGACTT
i caePb3.Scfld02_0     C 0 I 491
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=-3996.000000
s ce10.chrX            3704311 463 + 17718866 TGTAAATTCTCACGGTCAGTGCTTGAACCTTGAAGTTCTTGAACTTGGTTAGTTGCTCACTAGTTAGCTGTGCGTTAACTTATACACTATAAGC-----AAAAgcttcactga---catgcagaccgtggtttcggggcctgacgcctgcctgacacctgccgcgcctgaaatagctttttctcggtaatttggcgaaaaatcaaaggcttaggtttaatagcgtcacttttgaattttgcgccgcactatacaaaacttacggttacggcatgagaccggcaaggcaggcgtgtcagTGCCTACTAAAAGCAGTGCACATAACGATGCATGTTTTACAGTCTTATAGAGTTCTACCACTTCTGAGATTATAGGTAATTTTTTTGTGAATTGTTGTGCTAAGTTTAAGTCAACCCCAATTTTTCGAATTTACGAAAAAAACCTGTTTTATTCTGGAAAAAAAACTGCAGAA
s caeSp111.Scaffold630 5811702 272 + 20921866 ------TTCTCACA--------TTAACCTTCAAAGACTTTCAAC--------TTTCCCACCAGTTCA------GGTCACACTTATTGTCTGAGCTGCTGAAGAGGTTC-TTGAGTTCACGTACTCCTTTGGTTCATTGCTCAAC-TATTTCTAACATTTCTAACATC---AATGGCAGTTTCT--GTAG------AGAAAACCGAAAGTTCAGGT-----------------------------------TACA------------------------------------------AGTGC---TTAGAAATAATTCAGAGAAC-----------------------------------------------------TTCATCTCTGAA-------------------CAAAAcccaatt------attttcaaaaaaaacctctCATGTGTTTGTCATATTGTAGCAGAC
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2086514 491 +  4147112 I
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=-6314.000000
s ce10.chrX            3704774 131 + 17718866 ATTGGAGGTACAACAATTCTTGGTATTTTCCCTTAAACTACTCACCTGAGGTAAAAACCCAAATTTCACAATTAGACTAACAAACTTAAACATTTTATACGGTTCC----AAATTCA------AAAAAT--ATCTAATTAACA------------
s caeSp111.Scaffold630 5811974 104 + 20921866 ---ACATGCTAAGAAAT--AAGATATCTTCATGTGATCCT-------------AGAACATA-----------T--ATTCATAAACTTGAACAT----GGTGGTCTC----TATTTCATTAGAGAAACAGATATCCAAGTATTA------------
i caeSp111.Scaffold630 C 0 I 84
s caePb3.Scfld02_0     2087005 133 +  4147112 GTTCAATGCTCAACTGT--TTCTGAACTTCTCACAGCTCT-----------TGAGAACGAAAAGTTCA-AGTT--ACTCCAGAGACTGAACAC----AATCACTCCAAGAAATCTCATCTTTGAACCAA--TTCCAATTATCatctactgaaaaa
i caePb3.Scfld02_0     I 491 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=-1912.000000
s ce10.chrX            3704905 120 + 17718866 TAAATTCTACTGTGTCTTGTTCAAAACATTGAACCA-TGTTAAAAAAAAATTACGACTATAAGAAA---ACACAAAATTCTGAGCATTTCGTTTTATTACATA----CATACTTA-------------------------------------------------TCCACTCA-----------------------CCAAT
s caePb3.Scfld02_0     2087138 194 +  4147112 caagGTCTGATGTTTGTTAT--ATTATAGTAGACAACTACTAAGAAA----TGTGATCCTAGAACATATATTCATGAACTTCAGCATGGTGGTCTATTAGATAAACCCATACTTGAGATGTGAGTTGGTCTCTTGAGTAACTTTTCTATCtctttcatgaaattttcattaagTTTGTGTTGCGTTGTGTTTAttccaat
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I
e caeSp111.Scaffold630 5812078  84 + 20921866 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=289.000000
s ce10.chrX            3705025  4 + 17718866 ------TTCC
s caeSp111.Scaffold630 5812162  4 + 20921866 ------tccc
i caeSp111.Scaffold630 I 84 C 0
s caePb3.Scfld02_0     2087332 10 +  4147112 ttattttcct
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I
e caeRem4.Crem_Contig0  815307 480 -  4500979 I

a score=15707.000000
s ce10.chrX            3705029 157 + 17718866 ATTGTTTCAACTTCTTCTATTATTCATAAAAGAGCTTATGAAAAATTCTGGCAAAACATCGAATACACTCAATTATTTCAAAATTGTTTGCTGCCAGACATTACATCATCAGTTTTTTTTTGATGGACCCTATGACTTCTCCTATA------------------TATTCCGTTCA
s caeRem4.Crem_Contig0  815787 131 -  4500979 attgtttc------catttttattcatgCGCGTGctcatcaaaaattctgataaaaCACCG---ACACTCAATTG--CctttattttctctctccagACACTATATCATTCCACTTGCTTT----GACC-TATTAC----------------------------CAACTAGTTTT
i caeRem4.Crem_Contig0 I 480 C 0
s caeSp111.Scaffold630 5812166 134 + 20921866 attgtttca--tttcaattttattcatgCGCCGGctcataaaaaattctgacAAAACGTTGA--GCATCctat------aatattttcttctgcCAGACACTACAtcattcccattttctt---aGACCATATGAC----------------------------TATTCGGCTCA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087342 160 +  4147112 attgtttca--tttcaattttattcatgcGCGGcatcataaaaaattctgacaaaACGTCG---GCTCTCTAT------ATTTCATCTTCCGAATAGACCCCACATCAGGCCGCTTCTTCC---CGACTTTATGAATTTTCC-ATGGTGATAATTGACATTGTGTCTTCGGCTCA
i caePb3.Scfld02_0     C 0 I 43
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I

a score=2131.000000
s ce10.chrX            3705186 40 + 17718866 CCATGGCGATGATTGACTAAGATTTTA-TTCAATGGTCCGC
s caeRem4.Crem_Contig0  815918 32 -  4500979 CCATGGTAATAAC-----TTAGTTTTC-TCC---AGcccat
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5812300 38 + 20921866 CCATGGTGATAACTGACATTGATCTTCATTC---GGCCCAT
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2087502 43 +  4147112 I
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I

a score=-1408.000000
s ce10.chrX            3705226 10 + 17718866 CTCATTTCCC----------
s caeRem4.Crem_Contig0  815950 10 -  4500979 ttcattttga----------
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold630 5812338 20 + 20921866 TTCATTCCGAGAGTCAATTT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087545 10 +  4147112 CTCACTCC----------TC
i caePb3.Scfld02_0     I 43 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I
e cb4.chrX             8859433 492 + 21540570 I

a score=-8959.000000
s ce10.chrX            3705236 27 + 17718866 TCATTTTCAA-----------AAGTTTTGA------------------CGCGCCAG
s cb4.chrX             8859925 22 + 21540570 TCAATTCCCG-----------AAGGTTCGG-----------------------CCT
i cb4.chrX             I 492 C 0
s caeRem4.Crem_Contig0  815963 54 -  4500979 tCAGTTTAAGAgagcacaaaaaagtttcgaagcAAAGGAAAGCCGA--GGCCCTct
i caeRem4.Crem_Contig0 I 3 C 0
s caeSp111.Scaffold630 5812358 45 + 20921866 -CATTTGAGG----------AAAAGTTTCTGCCGCCGGGAAACGAAACCGCGCTCT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087555 29 +  4147112 -CAAATGAGG----------AAAGCT------------GAGGCG----CTCTCTCt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  111151 546 -   152914 I

a score=145006.000000
s ce10.chrX            3705263 364 + 17718866 CCGAAAAACGATCACAACAAGTAGTGTGTC---------------GCAATGAAACAATATACCAGTATTCCATTTCA--GTCGCCGC--CGAGC-TTGCCATGTTTCGAATGCGTCTCTCTCtgtgtgtgtgtgtgtgtgtgGTAGTGCTTCCAAAAAA-CTT--TTTCTCATCTTTCATC---AGATGCTCCCTCGAGCCC--------------CAACTTCCTTTTTCTCGTG--CATTTCCACCTAGACTCGCGCTAGTTTCTGGAACAACTATATAT----GCTACGTCACACAC---------------GTCACGTGAGAAATATGGAGCATATAGGGGGTTGTTTCGACACC-CTTTTGTTCTTATCTATCATGTTCTCTTCTT---CATC-TTCATCCTCTTCTTTGTTGAG-TTTTTTTCCTT
s cb4.chrX             8859947 353 + 21540570 Cc--agaatattcaaaacaaGCG--ATGTCGTCGTCGTGCTCAAAGGAATGAAATAATATCCTCGTATTCCATTTCAT--------C--CGAGCTTTTCCTTGTTTCCAATGC------------------GGATGTGCGCACT----CCTCCAAAAAACTTT-CTTTCTCGTCTTTCATCAGAAGATGCTCCCTTGAGCCTGAGCCTCCTTCCAAAAACTTGCATTT---CATG--CACTTCCACCTACTC----CTCCTTTTCTGGAACAACTATACATATAGACTACGTCAT---CAAGATG----GGACCACCACGTGA---------------------GAAGTTTCAACACTCCCATTATTCTTATCTATCATGtcttttatttttgcatcttttcttctccttcatttcgcgttgttt----tt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  816017 347 -  4500979 cc--aaaatgttcaaaacaagCA--GCGTCGTCGTTG--------GGAATGAAATAATATACGCGTATTCCATTTCATGGTAGTCGC--CGAGC-TTTCCTTGTTTCGAATGC------------------GTATGTGTGTGGTAGTgcttccaaaaaaactt--tctctcATCTTTCATC---AGATGCTCCCTTGAGCCC-------------AAAACTTCCCTTTTCGTATG--CACTTCCACCTAGAC---ACCCAGTTTCTGGAACGACTATAC------ACTACGTCATGTGCAAGATA---TGGAGAGGCACGTGAAAATTT------------TGGGGAGCTTCGACACT-CCATTTTTCTTATCTATCATATTCAGTCCTTCCGCatc-tctcttccttttcatgccaca-cattt----tg
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5812403 340 + 20921866 ct--aaaatgttcaaaacaaGCA--ACGTC---------------GGAATGAAATAATATACGCCTATTCCATTTCATCGTAGTCGC--CCAGC-TTTCCTTGTTTCGAATGC------------------GTGTGTGG----TAGtgcttccaaaaaaactt--tctctcATCTTTCATC---AGATGCTCCCTTGAGCCT--------CTCCTCAAACTTCCATTTTCGCATG--CACTTCCACCTAGAC----ACCCATTTCTGGAACAACTATAC------ACTACGTCATATGTAAGATGGGCCCAAGAGGCACGTGAAATTTT------------GAGCGAGTTTCGACACC-CTATTATTCTTATCTGTCATATTTCGTGGTTCt-catc-tattttctcttaCCAAACGTA-TATGT------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087584 336 +  4147112 cc--aaattgttcaaaacaagCA--GCGTC---------------GGAATGAAATAATATACTCGTATTCCATTTCATCCTAGTCGC--CCAGC-TTTCCTTGTTTCAAATGC------------------GTGTgtgg----------ttccaaaaaaactttctctcTCATCTTTCATC---AGATGCTCCCTTGAGC------------CCATAAACTTCCATTTTCGCATG--CACTTCCACCTAGAC----ACCCATTTCTGGAACAACTATAC------ACTACGTCATATgtgagaagatgaagatggacacgtgaaaattttgg-------agaagagaGTTTCGACACC-CCATTATTCTTATCTATCACATTTTGTGGTTCT-CATC-TTTTCCCATTTA-TAAACAAA-TATGT------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  111697 304 -   152914 cctaaaaatgttcaaaacaaGCAGTGCgtc---------------gaaatgaaataataTAGGCGTATTCCATTTCATCGAGGCCTTCACCAGC--AGTCTTGTTTCGAATGC------------------GAGTGTGT------TTCCTTCCAAAAAACTTT----TCTCATCTTTCATC---AGATGCTCCCTTGAGCCC--------------AAACTTTTGCTGGCTGCTGGCCACTTCCACCTAGAC----ATC---TTCTGGAACAA-TATGCAT----TCTATGGAATGATATAAATT-----------CACGTGGCAGttt---------------------------cc-ttttctttctttttctttttttttcttatttct------tattccctgttggactttttg-tttt-------
i caeJap4.Scaffold1521 I 546 I 272

a score=-351.000000
s ce10.chrX            3705627 14 + 17718866 AAAAATTACGTTTT
s cb4.chrX             8860300 14 + 21540570 aaactctgcatttt
i cb4.chrX             C 0 I 22
s caeRem4.Crem_Contig0  816364  5 -  4500979 aaaat---------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2087920  0 +  4147112 C
e caeJap4.Scaffold1521  112001 272 -   152914 I
e caeSp111.Scaffold630 5812743  0 + 20921866 C

a score=-4147.000000
s ce10.chrX            3705641 26 + 17718866 CTCAGACCTCCATGACTTGTCTATTT----
s caeRem4.Crem_Contig0  816369  7 -  4500979 -----------------------tctatct
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 5812743 15 + 20921866 ------CACTCACAAATT-----TTT----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087920 15 +  4147112 -----------ATAGAATGCCGATTT----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860314 22 + 21540570 I

a score=26224.000000
s ce10.chrX            3705667 154 + 17718866 ATAATAATTTCTTGGAATATTTCGTTAGACTTTTACATTAAAGTGACCAAATTA---AACCTCT------------CGA----AAAAGTATTT-GTAGTTGGATTTCAACTACGTCATTCCAGTTCCATACACTCGCC----------AAAATAATAATACGCTCCAATAAATAAAGAGCTCGA
s cb4.chrX             8860336 155 + 21540570 AGAAAAATGCTTTggtatattt--tcaaaattttata-----------taattc---gtttttt--tttcacac--ccagaaaaaaagtattc-aTGGAAGTCTGAGAGTTGCGTCATTCCAGTTC------TCTACCAAACCGAG--AGAATAATAACATGCCTCAATGAACAAggcgttttc
i cb4.chrX             I 22 C 0
s caeRem4.Crem_Contig0  816378 136 -  4500979 ctcagaatatttt--tatattt--tttgaattcta--------------atttc---aaCTACT-------------------AAAAATATTC-TTGG-----TGCTAGTTGCGTCATTCCAGTTCCATACTTCAACCAAAACGAG--AAAATAATAACACGCTTCAATAAATAAGACGTCTCG
i caeRem4.Crem_Contig0 I 2 I 1
s caeSp111.Scaffold630 5812758 141 + 20921866 --------------GCATATTC--TTGGAATTTC-----------------TCccaaaatttctaatttcatcCCACC-----AAAAGTATTCTTTGGGGAGTT----GTTGCGTCATTCCAGTTCCATACTCCTGCCAAAACgagg-aaaataataatacGCTTCAATAAACAAGACGCTCAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2087935 144 +  4147112 --------------Gcatattc--tttgaatttccaa-----------aaattttcgaatttctaatttcatac--AC-----AAAAGTATTC-TTGGGGGTTT----GTTGCGTCATTCCAGTTCCATACCCATGCcaaattgaggaaaaataataacacGCTCGAATAAGCAAGACACT-AA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I

a score=1638.000000
s ce10.chrX            3705821 3 + 17718866 AAA
s cb4.chrX             8860491 3 + 21540570 aaa
i cb4.chrX             C 0 I 62
s caeSp111.Scaffold630 5812899 3 + 20921866 AAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2088079 3 +  4147112 AAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I
e caeRem4.Crem_Contig0  816514 1 -  4500979 I

a score=5689.000000
s ce10.chrX            3705824 22 + 17718866 TATCCATTTTCTCTTCGAACTT
s caeSp111.Scaffold630 5812902 22 + 20921866 TATCCACTTTCTCTTTGAACTT
i caeSp111.Scaffold630 C 0 I 38
s caePb3.Scfld02_0     2088082 22 +  4147112 TATCCACTTTCTCTTTGAACTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860494 62 + 21540570 I
e caeRem4.Crem_Contig0  816514  1 -  4500979 I

a score=0.000000
s ce10.chrX            3705846 439 + 17718866 TTTTGGCTCTGCTGCTTCTGCAAAAATTATTATAAACATAATAGGTAATAGTGAATATTTTTTTAAAGAAACATGGATTTTGTGTATGAAACCGTTAGCGCtttatttattgaattaaaaaaaaattatttttGGCGCCAGCATTATCACAAATAAAATACTGAAAATTACTGTAATCAAACATTTTTATAAAATTTGAAAAGCTCTGACGCTATTCCACATTTAAAAAAATACGTTGGAACTTATGAGAATATGAATTAAAATTACCTGTTCCACACACCACTTTGTAAAAATAACTTGAGTGCAATGTTGTTTTGTCGTGTAAAATACATACCTCCTATATTTTCGAAACGATCGGAAATTTTGCTTCTACCATACTTTAGCAAAGTTATGTTCATGCAAAATATATGCAATTTGCAATACGCGTACATTTTAATCG
e caePb3.Scfld02_0     2088104   0 +  4147112 C
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860494  62 + 21540570 I
e caeSp111.Scaffold630 5812924  38 + 20921866 I
e caeRem4.Crem_Contig0  816514   1 -  4500979 I

a score=239.000000
s ce10.chrX            3706285 29 + 17718866 AAATATATATTTTTATTCAAAAGTTT----TCA
s caeRem4.Crem_Contig0  816515 33 -  4500979 AAATATCCAGTTTCTCTTTGAACTTTAACTTGA
i caeRem4.Crem_Contig0 I 1 C 0
e caePb3.Scfld02_0     2088104  0 +  4147112 C
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860494 62 + 21540570 I
e caeSp111.Scaffold630 5812924 38 + 20921866 I

a score=-1301.000000
s ce10.chrX            3706314  9 + 17718866 AACT---TTCCC----
s caeRem4.Crem_Contig0  816548  9 -  4500979 -------ATCGTTCCT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2088104 12 +  4147112 AACTTGAATcac----
i caePb3.Scfld02_0     C 0 I 2
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860494 62 + 21540570 I
e caeSp111.Scaffold630 5812924 38 + 20921866 I

a score=2950.000000
s ce10.chrX            3706323 17 + 17718866 -AGACAAAAACACAAAGG
s caeRem4.Crem_Contig0  816557 16 -  4500979 -AAGCaaaaaaaCCACG-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5812962 17 + 20921866 aaacgaaaaaaaccaCG-
i caeSp111.Scaffold630 I 38 C 0
s caePb3.Scfld02_0     2088118 17 +  4147112 aagagagaaaaaccaAG-
i caePb3.Scfld02_0     I 2 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I
e cb4.chrX             8860494 62 + 21540570 I

a score=20108.000000
s ce10.chrX            3706340 35 + 17718866 TTAACATGTTGAAAAGTTTGATGCACTCGGTTT-GA
s cb4.chrX             8860556 36 + 21540570 TTAACATGCAGAAAAGTGAAGAGCATTCGGTTTCCA
i cb4.chrX             I 62 C 0
s caeRem4.Crem_Contig0  816573 29 -  4500979 TTAACATGTAGA------AAGAGCATTCGGTTT-CA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5812979 35 + 20921866 TTAACATGTAGAAAAGTGTAGAGCATTCGGTTT-CA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2088135 35 +  4147112 TTAACATGTAGAAAAGTGAAGAGCATTCGGTTT-CA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112001 272 -   152914 I

a score=354525.000000
s ce10.chrX            3706375 613 + 17718866  
s cb4.chrX             8860592 589 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  816602 585 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5813014 572 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2088170 585 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  112273 562 -   152914  
i caeJap4.Scaffold1521 I 272 I 416

a score=6624.000000
s ce10.chrX            3706988 12 + 17718866 G-CTT---TGTGCATG
s cb4.chrX             8861181 15 + 21540570 G-TTTTTGTATGCATG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817187 12 -  4500979 G-TTT---TATGCATG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5813586 13 + 20921866 GTTTT---TATGCATG
i caeSp111.Scaffold630 C 0 I 615
s caePb3.Scfld02_0     2088755 12 +  4147112 G-TTT---TATGCATG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112835 416 -   152914 I

a score=3474.000000
s ce10.chrX            3707000 12 + 17718866 ATTAGTGTGTGC
s cb4.chrX             8861196 10 + 21540570 --TAATGTGGAC
i cb4.chrX             C 0 I 104
s caeRem4.Crem_Contig0  817199 10 -  4500979 --TAATGTGCGT
i caeRem4.Crem_Contig0 C 0 I 2
s caePb3.Scfld02_0     2088767 10 +  4147112 --TAATGTGTGC
i caePb3.Scfld02_0     C 0 I 13
e caeJap4.Scaffold1521  112835 416 -   152914 I
e caeSp111.Scaffold630 5813599 615 + 20921866 I

a score=-249.000000
s ce10.chrX            3707012 24 + 17718866 TAGATCAGGTTGAACAAGTTCAAA
s caeRem4.Crem_Contig0  817211 17 -  4500979 tgttttatgtt-------ttcatG
i caeRem4.Crem_Contig0 I 2 C 0
e caePb3.Scfld02_0     2088777 13 +  4147112 I
e caeJap4.Scaffold1521  112835 416 -   152914 I
e cb4.chrX             8861206 104 + 21540570 I
e caeSp111.Scaffold630 5813599 615 + 20921866 I

a score=-8367.000000
s ce10.chrX            3707036 135 + 17718866 GTTTCTGTAAATGCTTTGAGATTTTCCAAGAAAAATGTCTGAAAAATG-----TGCATCCGGTCAGCGTGCTTTTCTCTCTTTGTCGCGCCAAGAAGTTCCGTTCCTT----------TTTCTTATAATCCGTGTTTTTTCCTCAGAATT---------------
s caeRem4.Crem_Contig0  817228  76 -  4500979 -------TCTATCTGC---------------------------CAATT---CTTGTGTCC---CAATGATCGTTTGGATCTTTGTATGAGAGGGAACTTCC--TCatt----------ccac----------------------aaaaaa---------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2088790 129 +  4147112 gttttgttaTATGTGTTGAT-------------GAGGTTTTAACAATTCTGCTTGCATCT---CATAGATCTTTCAGCC----------AACGGAAGTTCC--TCATTGAAGGAGCCACCACTCCTG--------TTAACCTTGAAAACATGCCCTTCCACTGGT
i caePb3.Scfld02_0     I 13 C 0
e caeJap4.Scaffold1521  112835 416 -   152914 I
e cb4.chrX             8861206 104 + 21540570 I
e caeSp111.Scaffold630 5813599 615 + 20921866 I

a score=-6855.000000
s ce10.chrX            3707171 55 + 17718866 ATTCCTTCACCATTTGTAAGTAGTGATACCGAGTGCA-CAATCATTGAAACAA------AGT-------
s cb4.chrX             8861310 50 + 21540570 ATTCCTTCACCCCCTGAATACA-TGCCCTCCCGAG---CAACTAGTT--ACAA------AAC-------
i cb4.chrX             I 104 C 0
s caeRem4.Crem_Contig0  817304 50 -  4500979 ---------aaccCTGAAAACA-TGACCTTGATGGTACCAGTTGGTC--ACAATGGCTGCAC-------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2088919 33 +  4147112 ----------------------------TTTCTTGTACCAATTGGTT--CCAA------TACCCCGAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  112835 416 -   152914 I
e caeSp111.Scaffold630 5813599 615 + 20921866 I

a score=135153.000000
s ce10.chrX            3707226 387 + 17718866 TCTATTTTTAGCATAGTCATTCACAATTCACAA------TTCTTCGGTCCGTCATAAATCTTTCTAAAAAAATCGGAAGAAAAAGTGAAAAAGAGCCAGCGGCTCGCGTCGCCGCAACAAAACT------CTCCA---TATGCAGGCGCCAGAAATATTTCTATTACTTGGAACGTTGT-GGCAAGTCTCTAGTGGCCCATTTCGACCAGTCCCCCGCCAACCCCCTGATG-CCAACAAC-TCTTAGGTTCATTTCCATGTTGGCGCTTCGGGCTTATTCATGAGACAA-AAAGGGAAAGGAG----------------AAGAATATTCTTATTCTTCTTACAAACTTTTTTTGCTCCCCTTTCTTTTCTCG-CCTT-TTTCTTTTGAATAGACTGACTGAAAACATAATTGAGTGATGTCACC
s cb4.chrX             8861360 390 + 21540570 TCTATTTTTAGCGTC--GTCCTACAAGGCCATAGAAT--GCATGTTTCTTGTCATAAA----TCCaacaaaatc--aagaaaaagt--------gCCAGCGGCTCGCACTGGCTCGCACCAACTTTTGTGCTCCACAGCCTGAA---ACCAGAAATATTTCTATTACATGGAACGTTGT-GGCAACTCTCTAGTGGGCCATTTC--CAAAAAAGCGCCC-TCCTCCTCTTT-CCAACAGCTTTTTAGGTTCATTTCCATGTTGGCGCTTCACGCTTATTCatgagccaa-aaaaagaataagtcTACtttttttCTGCCAAAAACTTATTCTTCTTGTTCCCGCCcatttttgtcttctttttc---ttgcgcccattttttttcaaact----ctctGAAAGGCATAATTGAGTGATGTCATC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817354 327 -  4500979 TCTATTTTTAGCCTTCACACTTACAATTCTCTA------GTCTGTTTCTTGTCATAAA----Tccaaagaaatc---agaaaaagt--------gcCAGCGGCTCGCTCT--CATAACCAAACTTTTGTGCTCC----CATGCA---GCCAGAAATATTTCTATTACATGGAACGTTGT-GGCAAGTCTCTAGTGGCCCATTTCGACCAGAAGGCAGC---------TCGA-CCAACAAC-TCTTAGGTTCATTTCCATGTTGGCGCTTCA-GCTTATTCatgaaccaa-aaaagaaa---------------------aagaacatg--------------gAGCAAACTTTTCGCCTTTTTC--------------CTTTATTTGACT----CGACTGAAAGCATAATTGGGTGATGTCACG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814214 346 + 20921866 TCTATTTTTAGCCTA------AACAATgtccatttttccttttgtttcatGTCataaa----tctagaaaaatc----aaaaaagt--------gccAGCGGCTCGCGCT--CGCAACTAAACTTTTGTGCTC-----CGTGCA---ACCAGAAATATTTCTATTACTTGGAACGTTGT-GGCAAGTCTCTTGTGGCCCATTTCAACCAGGAGGCAGG-------CGGCAA-CCAACAAC-TCTTAGGTTCATTTCCATGTTGGCGCTTCA-GCTTATTCATGAACCAAGAAAAGGCAG--------------------AAGAACATGCtgtcccaa-----aaaaaaacttttcttttctttt----ctcg-ccat-tttcttttgact----tGGCTGAAAGCATAATTGAGTGATGTCACC
i caeSp111.Scaffold630 I 615 C 0
s caePb3.Scfld02_0     2088952 342 +  4147112 TCTATTTTTAGCCTG------AACAATGTCCA-------GTGTGTTTCTTGTCATAAA----tctgagaaaatc---aaaaaaagt--------gccAGCGGCTCGCGCT--CGCAACTAAACTTTTGTGCTC-----TATGCA---ACCAGAAATAATTCTATTACTTGGAACGTTGTGGGCAAGTCTCTAGTGGCCCATTTAGACCAGAAGACAGC-------TCCCAGCCCAACCAT-TCTTGGGTTCATTTCCATGTTGGCGCTTCA-GCTTATTCATGagccaa-aaaaggaaa--------------------aagaacatgccttctaaa-----aacttttcttgtcttttctttt----ctcgcccat-tttcttttGACT----AGGCTGAAAGCATAATTGAGTGATGTCACC
i caePb3.Scfld02_0     C 0 I 43
e caeJap4.Scaffold1521  112835 416 -   152914 I

a score=-8096.000000
s ce10.chrX            3707613 66 + 17718866 GTTAACTTGTTCCCTATTATTTTTGAGAAGTTTTCAATAAATCACTATCAAGATATATCTTTTTGT-------
s cb4.chrX             8861750 41 + 21540570 ---ACCTCTATTCTT----CTCTTCGAGGGTTTGG-------------------------TCCCAAGAAAGTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817681 50 -  4500979 ---ACCACCATTCATTCCATTCTTCG-TGGTTTGGTAC-------------------TCTTCACGAGAAACGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814560 28 + 20921866 ---------------ACCATTCCTAG-TCGTTTGG----------------------TCTTCTTGT-------
i caeSp111.Scaffold630 C 0 I 76
e caePb3.Scfld02_0     2089294 43 +  4147112 I
e caeJap4.Scaffold1521  112835 416 -   152914 I

a score=878.000000
s ce10.chrX            3707679 30 + 17718866 TGAAAGCCAAAATTATGGTGAAATAATCAA
s cb4.chrX             8861791 17 + 21540570 ----GACGACAATTA---------GATCAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817731 17 -  4500979 ----AGTCAAAATTA---------GATCAT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2089294 43 +  4147112 I
e caeJap4.Scaffold1521  112835 416 -   152914 I
e caeSp111.Scaffold630 5814588 76 + 20921866 I

a score=-9645.000000
s ce10.chrX            3707709 91 + 17718866 ATATCATAGGATGACTTTAAACAAAAAATTGAAAAACTGGCTCTGCTCCATCTATAAAAAATTTAGTTCATCT----TCAAATAACCTCAATCGG------
s cb4.chrX             8861808 51 + 21540570 --------------------------------------------GTTcgagttttc------ctttttcttctggagCTCGATGATTTTTCATGTCTCTCC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817748 46 -  4500979 --------------------------------------------GTTtgatttctcaga---ttttcacgtcc----tttgatgatttttcatgtCT----
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2089337 76 +  4147112 CTATTGTAGAAGAAACCTAAAC--TAAATTAGATCA-------TGTTTGACTTCCCaagattttttcacttttcaacatggatga----------------
i caePb3.Scfld02_0     I 43 I 12
e caeJap4.Scaffold1521  112835 416 -   152914 I
e caeSp111.Scaffold630 5814588 76 + 20921866 I

a score=14652.000000
s ce10.chrX            3707800 38 + 17718866 TTTTTGTTGTCATTTTCCACTTTACTGCTCAATCCAAC
s cb4.chrX             8861859 28 + 21540570 TTTTTATTG----------CTCTATTGCTTTACACCCT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  817794 28 -  4500979 TTTTTATTG----------CTCTATTGCCCTATCCACC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814664 28 + 20921866 tttttattg----------ctctattgccctatcctct
i caeSp111.Scaffold630 I 76 C 0
s caePb3.Scfld02_0     2089425 28 +  4147112 tttttATTG----------CTCGATTGCCCTATCCtct
i caePb3.Scfld02_0     I 12 C 0
e caeJap4.Scaffold1521  112835 416 -   152914 I

a score=65388.000000
s ce10.chrX            3707838 65 + 17718866 C----------TCTTGTTGTCAAGTGTTTTTAGCAAGTATGTTAAGTTTAAAACTGATAGTGTCATATGATTTGG
s cb4.chrX             8861887 70 + 21540570 cacttt-----tcttgttttcaagtGTTTTTAAGAAGTCTGTCAAGTTTAAAACTGATATTGTCATATGATTCGG
i cb4.chrX             C 0 I 540
s caeRem4.Crem_Contig0  817822 65 -  4500979 C----------CCTtgttttcaagtgtttttagTAAGTCTGTCAAGTTTTAAACTGATATTGTCATGTGATTCGG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814692 75 + 20921866 ttctttctttctcttgttttcaagTGTTTTCAGTAGGTCTGTCAAGTTTAAAACTGATATTGTCATATGATTCGG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2089453 75 +  4147112 ttcactttctctcttgttttcaagtgtttttagTAAGTCTGTCAAGTTTAAAACTGATATTGTCATATGATTCGG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  113251 64 -   152914 ----------CTCTcggtttcatgt-tttttagTAACTCTTTCAAGTTTAAAACTGATATTGTCATATGATTCGA
i caeJap4.Scaffold1521 I 416 C 0

a score=-3945.000000
s ce10.chrX            3707903 79 + 17718866 TTGGCATCTTCTAGAAAACTTAAAGCTCgtgtgtgtgtgtgtgtgtgt-----------AAAATAGAAAAAAAAA-ACAAACGAAGATTTG
s caeRem4.Crem_Contig0  817887 35 -  4500979 --------------------------TCGTCAAAGTCCGCTCTTGACT--------------------aagaaaacgctaa----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814767 36 + 20921866 -------------------------CTCGTCGGTGTCAGCTCTCGAGT--------------------AAAAGAA-ACTAA-G--------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2089528 36 +  4147112 --------------------------TCGTCGGTGTCGGCTCTTGAGT--------------------AAGAGAA-ACTAAGG--------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  113315 67 -   152914 -----------------------TGGCCGTCGTCGTCGACTCTTGAGCtgggagagaaaaaaagaagaaaaaaaa-agaaagaaaagtgtg
i caeJap4.Scaffold1521 C 0 I 485
e cb4.chrX             8861957 540 + 21540570 I

a score=-4692.000000
s ce10.chrX            3707982 82 + 17718866 GGTTTTGCCCTGTTAGAAAAAAAACATTAACGGTGGAGTAGGGCCAATGGGGAAATGATTTCTGACCATATATCAGAAAAAA
s caeRem4.Crem_Contig0  817922 12 -  4500979 ----------------------------------------------------------------------gcacaaaaaaga
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814803 40 + 20921866 --------------CGAAAACGAGCGT-----GTGAAATGG----AATGg-------------------tgaacgaaaagaa
i caeSp111.Scaffold630 C 0 I 16
s caePb3.Scfld02_0     2089564 44 +  4147112 --------------GGAAAGTGAGTGT-----GTGAAATGG----AATGGcgaa---------------cgaacaaaaaaaa
i caePb3.Scfld02_0     C 0 I 25
e caeJap4.Scaffold1521  113382 485 -   152914 I
e cb4.chrX             8861957 540 + 21540570 I

a score=-1191.000000
s ce10.chrX            3708064 29 + 17718866 CTGTTCAAAAATTTTAGAGTTTTTTTTTT
s caeRem4.Crem_Contig0  817934 10 -  4500979 ----------gtgtgtgaaa---------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2089633 25 +  4147112 ----TCGAGAATGTGGGAACCTTTCTCTT
i caePb3.Scfld02_0     I 25 C 0
e caeJap4.Scaffold1521  113382 485 -   152914 I
e cb4.chrX             8861957 540 + 21540570 I
e caeSp111.Scaffold630 5814843 16 + 20921866 I

a score=61.000000
s ce10.chrX            3708093 2 + 17718866 TA
s caeRem4.Crem_Contig0  817944 1 -  4500979 -a
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2089658 0 +  4147112 C
e caeJap4.Scaffold1521  113382 485 -   152914 I
e cb4.chrX             8861957 540 + 21540570 I
e caeSp111.Scaffold630 5814843 16 + 20921866 I

a score=-9182.000000
s ce10.chrX            3708095 153 + 17718866 ATTTTGAGTCAAAAATGGTGAAAGCTGAGTTTGCGCCAGTTTTCGAGACATTCGAAGCACTATGGCATGTTTAAACCCCTACAATTATAGAAGAATATTTTAAACACAATTGACTTAAAATCTAGAATTTTTGTTTAATTTTGAAGGAACAAA
s caeRem4.Crem_Contig0  817945  57 -  4500979 -atgtcgaatgaaaa----gaaaa----------------------------caaagaa------cgCTTATA-----CTGTAAGCCGAGAA-------------------------------------------------TGTGGGAAC---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814859  63 + 20921866 ACTGTAAGCCGAGAAT-GTGGGAACC-------------TTCTCGTGTC--TCAAAGTA------CATGTTTA-----TTACTTCCTCAG---------------------------------------------------------------
i caeSp111.Scaffold630 I 16 C 0
e caePb3.Scfld02_0     2089658   0 +  4147112 C
e caeJap4.Scaffold1521  113382 485 -   152914 I
e cb4.chrX             8861957 540 + 21540570 I

a score=-3989.000000
s ce10.chrX            3708248 664 + 17718866  
s caeRem4.Crem_Contig0  818002 549 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5814922 449 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2089658 488 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  113382 485 -   152914 I
e cb4.chrX             8861957 540 + 21540570 I

a score=6248.000000
s ce10.chrX            3708912 9 + 17718866 ATTCCTCCC
s caeRem4.Crem_Contig0  818551 9 -  4500979 attccaccC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5815371 9 + 20921866 attcctcCC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2090146 9 +  4147112 aTTCCTCCC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  113867 9 -   152914 ACTCTTCTC
i caeJap4.Scaffold1521 I 485 C 0
e cb4.chrX             8861957 540 + 21540570 I

a score=516988.000000
s ce10.chrX            3708921 1029 + 17718866  
s cb4.chrX             8862497 1078 + 21540570  
i cb4.chrX             I 540 I 7
s caeRem4.Crem_Contig0  818560 1009 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 7
s caeSp111.Scaffold630 5815380  985 + 20921866  
i caeSp111.Scaffold630 C 0 I 16
s caePb3.Scfld02_0     2090155  984 +  4147112  
i caePb3.Scfld02_0     C 0 I 6
s caeJap4.Scaffold1521  113876 1085 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-196.000000
s ce10.chrX            3709950 5 + 17718866 CTCAA-
s cb4.chrX             8863582 5 + 21540570 TCCCA-
i cb4.chrX             I 7 I 8
s caeRem4.Crem_Contig0  819576 5 -  4500979 TCCAA-
i caeRem4.Crem_Contig0 I 7 I 6
s caePb3.Scfld02_0     2091145 5 +  4147112 TCCaa-
i caePb3.Scfld02_0     I 6 I 6
s caeJap4.Scaffold1521  114961 5 -   152914 -CTAGA
i caeJap4.Scaffold1521 C 0 I 5
e caeSp111.Scaffold630 5816365 16 + 20921866 I

a score=66715.000000
s ce10.chrX            3709955 280 + 17718866 AGACTCAATGTGATTTCAAG--TTGACCT--TATGCCTGGGAAGAGAGA-----TTTATTGAAAAAATGTG---------TTGATT-TGATCCTCTAGAGTAAGCTTTTTTTCACATTACAAGCAAATCTCTGACACAAACGGGATGGGGAAAACAACAAAAAATGTTA----AGAGGACCCTTCAATTACAAGACCAAAGATC------------------TTCTGTCTGAGT-----TTGGG------CTCCATGTTTGAGAGCAT----------GAAAATGATCAAAAATCTGATTGTT-----------TTT--GAGTCAACACACTCGATGACTTCTTCTTTTTAATGT
s cb4.chrX             8863595 304 + 21540570 AGAATGAATGGGATTCCGGGGTTTGACCTTGTGTGCCTGAGATCCGGGgggatttttattgaaaaaacgtGTGTGTTGATTTGATCTTgatctctaa----aa-ttttttttggc-tcaaatcCAAAT-TTCGT-GTGTG-GGAATTaaaaaacaaacgaaaagaaaa-----aaaggacccTTCAATTACAAGACATGAGACGGCATTC-----CCTCTTCTTATGTCTGATG------TGAG---AGGTCC------------TCTTGTGT-GGGAAAAGATGATCAAAAAtcttattgttttttgagCGTGTTT--GAGTCAG-ACACTT-----Atttttcatgtccat--
i cb4.chrX             I 8 C 0
s caeRem4.Crem_Contig0  819587 281 -  4500979 AGAATGAATGGGATTCCAAG--TTGACCT--TATGCCTGGGAAATGaga-----tttattggaaaaacGTG---------TTGATC-TGATCtctaa----aagttttttctcac-tCTATT--------------------GGGTtaaaaaacaaacgaaaaaagaag--tgagagaGCTCTTCAATTACAAGACATGAGATCGCATT-------TTTTGCCTCCGTCTGATGGGAGTTTGAG---AGTCCCCATCTATGAGGGTGTTGTgt-ttgggaagatgatcaaaAATCTTATTGTT-----------TTT--GAGTCA--ACACTTCACGACGCCTTCttgttcat--
i caeRem4.Crem_Contig0 I 6 C 0
s caeSp111.Scaffold630 5816381 265 + 20921866 AGAATAAATGCGTTTGGATG--TTCACCT--TATGCTTGGGAAATGGGA-----TTTATGAGATAAACGTG---------TTGATT-CGATCtctta----aagtttttt---------------tgtctttgg-gaatgtgaaattgaaaaacaagcaaGAAGTG-------AAAGAGGCCTTCAACTACAAGGCATGAGACC-CATTT--------------CTGTCTAGG--------------CACCCCTATCTTCGAGTATGT--TGTCTTTTCAAGATGATCAAAAATCTTATTGTT-----------TTCGAGAGTCA--ACACTTCACGCCATCTACTTGTTCATCT
i caeSp111.Scaffold630 I 16 C 0
s caePb3.Scfld02_0     2091156 301 +  4147112 agaatgaatGGGTTTCGATG--TTGACCT--TATGCTTGGGAAATGgga-----tttattggaaaaatgtg---------TTGATC-TGATCTcctag---aagtttttttt----tctcatctatGTCTTTGG-gtatgtaaaattgaaaaacaaacgaaaagtG-------AGAGGGCCCTTCAATTACAAGACATGAGATCgcatttttttgcttccttcCCTGTCTAGGC-----TTGAGTCTCATTCCTATCTTTGAGtgtgttgtgttttttgaaaatgatcaaaaatcttattGTT-----------TTT--GAGTCA--ACACTTCACGACGTCTTCTTGTTCATCT
i caePb3.Scfld02_0     I 6 C 0
s caeJap4.Scaffold1521  114971 233 -   152914 TGACTTAATAAGATTCCGAG--TTGACCT--TTT--TAATGACCTCCGA-----TTTATGAGAAAAATGTG----------------TGATGTTTGAAAG-AAGTCTGTTGGGaa----------------tgg-ataaaaaaaatggaaaaaaaaagaaaaaaaaaagacaagtgAAATCCGTCAATTACATGACAT------------------------TGCAGTCTGAGG----------------------------------------GTGTGAAAAAGATCAGAAAGCAAATAGTT-----------TTT--TCGTCAACACACTTGGCGtctactttctttttttgt
i caeJap4.Scaffold1521 I 5 C 0

a score=573.000000
s ce10.chrX            3710235 2 + 17718866 TG
s caeSp111.Scaffold630 5816646 2 + 20921866 TG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2091457 2 +  4147112 TG
i caePb3.Scfld02_0     C 0 I 60
e caeJap4.Scaffold1521  115204 0 -   152914 C
e cb4.chrX             8863899 0 + 21540570 C
e caeRem4.Crem_Contig0  819868 0 -  4500979 C

a score=0.000000
s ce10.chrX            3710237 31 + 17718866 GCAGGGTGTTTCCTGATTTTATAGTTAAATT
e caePb3.Scfld02_0     2091459 60 +  4147112 I
e caeJap4.Scaffold1521  115204  0 -   152914 C
e cb4.chrX             8863899  0 + 21540570 C
e caeSp111.Scaffold630 5816648  0 + 20921866 C
e caeRem4.Crem_Contig0  819868  0 -  4500979 C

a score=-3547.000000
s ce10.chrX            3710268 102 + 17718866 GATAAATTCTTAAGggcgcttgcgggaaaattgtcaaaaacattttatgtgtgtggtaaaacaaccaaatatcatataaaaacttttcccagaatttttgaa--------
s cb4.chrX             8863899  60 + 21540570 ------tttttgaagaagcat------------------------------------agatctctcaagttttttctacatgcttttttgaaaataattgaa--------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  819868  63 -  4500979 ------ctttttttgacgcat-----------------------------------------cccagttttttttctaactgcCCATTCTAAAGACATAGatcttttcaa
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2091459  60 +  4147112 I
e caeJap4.Scaffold1521  115204   0 -   152914 C
e caeSp111.Scaffold630 5816648   0 + 20921866 C

a score=421.000000
s ce10.chrX            3710370 11 + 17718866 actgttttttt
s caeRem4.Crem_Contig0  819931 11 -  4500979 ttcattttttt
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2091459 60 +  4147112 I
e caeJap4.Scaffold1521  115204  0 -   152914 C
e cb4.chrX             8863959  0 + 21540570 C
e caeSp111.Scaffold630 5816648  0 + 20921866 C

a score=0.000000
s ce10.chrX            3710381 195 + 17718866 tgtttcaaaaagtgataattacttagtttttgccacttttttgtggaagtcgaaaataaaaaaaaaagtttACTTAAATTTTATGGTCTCCTCATGTTTTGAAAATTAATATTCAAACACTGTAGGGATTATGTTTTACCGAAATAGCTATAGTTTTCCCAAAAAGTGGGCGAAAATTCAGTAATTACTATTTTT
e caePb3.Scfld02_0     2091459  60 +  4147112 I
e caeJap4.Scaffold1521  115204   0 -   152914 C
e cb4.chrX             8863959   0 + 21540570 C
e caeSp111.Scaffold630 5816648   0 + 20921866 C
e caeRem4.Crem_Contig0  819942   0 -  4500979 C

a score=-376.000000
s ce10.chrX            3710576 67 + 17718866 CACTGTCAATAAAAACATTTCGAACTCTTTTTGGAAAGTTTTACCCAAATAGTTGTCATTTTAGCAC
s caeSp111.Scaffold630 5816648 46 + 20921866 CATTGACGa---------------ctctcttt--attttctcattcaattcGTCTCCACT----CAT
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2091459 60 +  4147112 I
e caeJap4.Scaffold1521  115204  0 -   152914 C
e cb4.chrX             8863959  0 + 21540570 C
e caeRem4.Crem_Contig0  819942  0 -  4500979 C

a score=-1217.000000
s ce10.chrX            3710643 8 + 17718866 ----CATTTTCA
s caeSp111.Scaffold630 5816694 6 + 20921866 ----CTTTTT--
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  115204 8 -   152914 cactCATG----
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2091459 60 +  4147112 I
e cb4.chrX             8863959 0 + 21540570 C
e caeRem4.Crem_Contig0  819942 0 -  4500979 C

a score=2568.000000
s ce10.chrX            3710651 9 + 17718866 ATAACTTAT
s caeRem4.Crem_Contig0  819942 9 -  4500979 atgaTTGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5816700 9 + 20921866 ATGATTGAA
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  115212 9 -   152914 ATAATTAAA
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2091459 60 +  4147112 I
e cb4.chrX             8863959 0 + 21540570 C

a score=-1883.000000
s ce10.chrX            3710660 4 + 17718866 ----TTTC
s cb4.chrX             8863959 2 + 21540570 -----tt-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  819951 2 -  4500979 -----TT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5816709 2 + 20921866 -----TT-
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  115221 7 -   152914 TTCAATT-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2091459 60 +  4147112 I

a score=139871.000000
s ce10.chrX            3710664 153 + 17718866 CAGGAATCGGAGAGGCGAACACGAAAAAAGTATTCGCAGCAGTACTATCAGCTATAGAATTTATGCATGATGAGAACCTTGTACATCGGAATCTTAAAGCAGAAAATATCCTGATCTTTGATGCAAATGATTACTCAAAGGTTTGTATTTTTT-----------------------------------------------------------------------------
s cb4.chrX             8863961 153 + 21540570 caGGAATTGGAGAGGCTAACACCAAGAAGGTCTTCGCTGCGGTCCTTTCCGCCATCGAATTCATGCATGACGAGAATTTGGTCCACCGTAACCTGAAGGCCGAGAATATCCTCATTTTCGATGCTAACGACTACTCAAAGGTTTGTATAATTT-----------------------------------------------------------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  819953 153 -  4500979 CAGGAATTGGAGAagtgaatacaaaaaaagtgtttgcCGCAGTGCTATCAGCGATCGAGTTTATGCATGATGAGAACTTGGTGCATCGGAATCTTAAAGCAGAGAACATTCTTATTTTCGACGCAAACGACTATTCAAAGGTTTGTATTGTTT-----------------------------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 I 181
s caeSp111.Scaffold630 5816711 153 + 20921866 CAGGAATCGGCGAGGCaaatacgaaaaaagtgtttgcCGCAGTACTATCAGCCATCGAGTTTATGCATGATGAGAATCTGGTGCATCGGAACCTTAAAGCAGAGAACATCCTCATCTTTGACGCAAATGATTATTCAAAGGTTTgtattgttg-----------------------------------------------------------------------------
i caeSp111.Scaffold630 C 0 I 58
s caePb3.Scfld02_0     2091519 153 +  4147112 CAGGAATCGGAGAGGCTAATACGAAAAAAGTGTTTGCCGCAGTACTATCAGCCATTGAATTTATGCATGATGAGAATCTGGTGCATCGGAATCTTAAAGCAGAGAACATCCTCATCTTCGACGCAAACGACTATTCAAAGGTTTGTattgttt-----------------------------------------------------------------------------
i caePb3.Scfld02_0     I 60 I 214
s caeJap4.Scaffold1521  115228 230 -   152914 CAGGAATTGGTGAAGCgaacacaaaaaaagtgtttgcggCAGTGTTATCAGCGATCGAGTTCATGCACGATGAGAATCTGGTGCATCGAAATCTCAAagctgaaaatattttgatatTTGATGCACATGATTATGGAAAGGttggttttatttttgacccggaataaaaaagtttggaaattttgaactCATGCATACATACTAGGAAAACAAGAAGcatcaataatttt
i caeJap4.Scaffold1521 C 0 C 0

a score=-1294.000000
s ce10.chrX            3710817 1 + 17718866 -A
s cb4.chrX             8864114 1 + 21540570 -A
i cb4.chrX             C 0 I 200
s caeRem4.Crem_Contig0  820287 1 -  4500979 -A
i caeRem4.Crem_Contig0 I 181 C 0
s caeSp111.Scaffold630 5816922 1 + 20921866 -A
i caeSp111.Scaffold630 I 58 C 0
s caeJap4.Scaffold1521  115458 1 -   152914 t-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2091672 214 +  4147112 I

a score=-33125.000000
s ce10.chrX            3710818  22 + 17718866 -----------------GTTTTCTACAAC------------------------------------------------------------------------------------------------------------------------AAAATTGGAG---
s caeRem4.Crem_Contig0  820288   8 -  4500979 ------------------------------------------------------------------------------------------------------------------------------------------------------GTATTGCA----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5816923 125 + 20921866 -----------------AATTTATGTAAGACAACACA-ATGGGAAGTGCTTCTCTTT-----------GTCTTCAAAAAGTGTAGTTAGAAAA----CCGAATTTCTTTAcggatagaaaaaagaaggacaAACTTTCGAGGGATCTGCAGAATTGCA----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2091886   9 +  4147112 -----------------------------------------------------------------------------------------------------------------------------------------------------AGTATATCA----
i caePb3.Scfld02_0     I 214 C 0
s caeJap4.Scaffold1521  115459 130 -   152914 gtttctttcctTCTCCTACTTTTTCCGCTCCAATGCAGATTTTACGTATTCTGGTCGGGAGACGTaaaacttttcggaaatttattTAACAGAGTACTAAAATTTGTGAAACGACCGA-------------------------------AAAGTTGTG-AAG
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8864115 200 + 21540570 I

a score=179008.000000
s ce10.chrX            3710840 188 + 17718866 ----CATAACATTTTCAGGTAAAAGTCACCGATTTTGGATTGACGCGAAAAGTGGACACCACTGTAAAATATTTGGAATACGTCAACAATTACCACGCCGCCGAACTCTGCGACACTGTTGTGAACGAAAAGCTCGTGGTAAACAAGAGCACGGATATTTGGGCACTTGGTAAGTC---AATTCATCCCTCCTAA
s cb4.chrX             8864315 172 + 21540570 ----CGTAATGTTTTCAGGTGAAGGTCACCGACTTTGGACTGACCCGCAAAGTTGACACCACTGTCAAATATTTGGAATACGTTAACAACTATCATGCCGCCGAGCTTTGCGACACGGTCGTCAACGAGAAGTTGGTGGTTAACAAGAGCACCGATATTTGGGCACTTGGTAAGAG-------------------
i cb4.chrX             I 200 I 5
s caeRem4.Crem_Contig0  820296 191 -  4500979 ----CGTAATATTTTCAGGTAAAGGTCACCGATTTCGGACTGACTCGCAAAGTTGACACCACTGTCAAATATTTGGAATACGTCAACAATTATCATGCCGCCGAACTTTGCGATACAGTTGTGAACGAGAAGTTGGTGGTGAACAAGAGCACTGATATTTGGGCACTTGGTAAGTAGTCGATTCGTTTCTGCAAA
i caeRem4.Crem_Contig0 C 0 I 25
s caeSp111.Scaffold630 5817048 172 + 20921866 ----CGTAATGTTTTCAGGTAAAAGTCACTGATTTCGGACTGACTCGCAAAGTTGACACCACCGTCAAATATTTGGAATATGTCAACAATTATCATGCCGCTGAACTTTGCGATACGGTGGTGAACGAGAAGCTTGTCGTGAACAAGAGCACGGATATTTGGGCACTTGGTAAGTC-------------------
i caeSp111.Scaffold630 C 0 I 10
s caePb3.Scfld02_0     2091895 172 +  4147112 ----CGTATTATTTTCAGGTGAAGGTCACTGATTTTGGACTGACCCGTAAAGTTGACACCACCGTCAAATATTTGGAATATGTCAACAATTATCATGCGGCAGAACTTTGTGATACTGTAGTGAACGAGAAACTCGTTGTGAACAAGAGCACTGATATTTGGGCACTTGGTGAGTT-------------------
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold1521  115589 181 -   152914 TGCACGATTTTCTTTCAGGTAAAAGTCACAGATTTCGGACTGACGCGCAAAGTTGACACCACTGTCAAATATTTGGAATACGTAAACAATTATCATGCCGCCGAGCTGTGTGATACGGTGGTAAATGAAAAGTTGGTTGTGAACAAAAGCACGGATATTTGGGCTCTTGGTGAGTG---ATTTC-----------
i caeJap4.Scaffold1521 C 0 C 0

a score=-7742.000000
s ce10.chrX            3711028 33 + 17718866 TTTTGT------TTGCAACGCTTTTAGAAACGTGCCAGT
s cb4.chrX             8864492 22 + 21540570 TTCTGCAATGTAGAAAAAAGGT-----------------
i cb4.chrX             I 5 C 0
s caeSp111.Scaffold630 5817230 27 + 20921866 TTCTGC---------AAACGCTTTTAG---CTTGTCAAC
i caeSp111.Scaffold630 I 10 C 0
s caePb3.Scfld02_0     2092071 28 +  4147112 TCCTGC--------AAAACGTTTTTAG---CACATTAAC
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold1521  115770  9 -   152914 ----------------------------AACATGATA--
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  820487 25 -  4500979 I

a score=10666.000000
s ce10.chrX            3711061 209 + 17718866 TGACATCATT------------TTTGACAA---GT---------AGTAGGCGGCTC-GGCCACTTAA-GAGATCCGATATTTTTCCTTGTTCACTTTGTTCTGTTTCCGTGCAGGGTGCAGGGTACAGGATCAAAAGATTTATTGAC-------------TTTTTACAACAAACTTGGTACCTTGG---TACAATCGGTGTTGGACTGTAACTGGAACAATTGTTTCAAGTG----CTCATTGAGT-TTACACAGG-------------------------------------
s cb4.chrX             8864514 169 + 21540570 TGACATCATTTTTTATGAGTAGTTCAACGACTTTTGTTTTAACAAGTAGGCGGCTTGAAGTACTTGACATAGCT---CATTGTT-TTTGT--GGTTTGTTTT------------------CGGAACAGAATCAAAGGATTTGTTGAC-------------TTA-------------------------------------------TGTCACGTATAGAACAGAACTAGGCG----TTAATTGA---CTAAACACG-------------------------------------
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  820512 174 -  4500979 TGACatcacttctttt------tcgaaCAA---GTGTTTTAACAAGTAGGCGGC---GGACACTTAa-acactt---tattttt-cttgttcggTCGGTCTT-------------------------GGATCAAAAGATTTATTGAC-------------TTACTGC------------ATCCCGG---TGC-AACTGCGTTTAACTGTCACgtagaaaaaagaactcaACG----TTTCTCG-------AACATG-------------------------------------
i caeRem4.Crem_Contig0 I 25 I 2
s caeSp111.Scaffold630 5817257 174 + 20921866 TGACATCAT-------------TTTAACAA---GTAGTTTAACAAGTAGGCGGT---TAGCACTCAA-Gacctt---tattttt--tcgttccGTCGGTCCA-------------------------GGATCAAAAGATTTATTGAC-------------TT--TACTG----------AGCTCGG---TACAAACGGTGTCTGCCTGTCACGTAGAAAAGGGAACTTAACG----TTTCTCAAGTGATGAACATG-------------------------------------
i caeSp111.Scaffold630 C 0 I 36
s caePb3.Scfld02_0     2092099 137 +  4147112 TGACATCAT-------------TCAAACAA---ATAGTTTGACAAGTAGGCGGT---GAGCACTTGA-GAgtta---tattttt-cttgttcggTCGGTCCT-------------------------GGATCAAAAGATTTATTGAC-------------TTTCTGCAA----------ATCTCGG---TACAAACGGTGTCTGGCCGTCAC---------------------------------------------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  115779 213 -   152914 TGACATCACT------------TTTTGCAA---------TGATAAACTAGCAAA---TGGGAC-----AAGTAC---CGCTTTT-----------CGGTTAG-------------------------GGTTCAAAAGATTTATTGAccctctctttcttttttctgc------------attttggcCTTGCAAGAGTTGTCTAGCTGTCACGTAAAACGAAGAGCAAAACGTCGTTTTTTCAAGTGATCAACGTGTTTAAACACTTCACTGCTCCATCTGTTTACCAATAGA
i caeJap4.Scaffold1521 C 0 C 0

a score=-16275.000000
s ce10.chrX            3711270 40 + 17718866 AAGCGAAAATATTTGAAAGTAGA-------------------------GGACGGCACTGTGAAAA
s cb4.chrX             8864685 11 + 21540570 -----T---TGTTTGATAA----------------------------------------------
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  820688 17 -  4500979 -----TACACACTTGGTAATTA-------------------------------------------
i caeRem4.Crem_Contig0 I 2 C 0
s caePb3.Scfld02_0     2092236 15 +  4147112 ------GTAGAAAAGAGAACT--------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  115992 54 -   152914 ----------AAATGACGATAAAAACACATTACGCCTAAGATTTTAGCGTGTGGGACCATCAAA-
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5817431 36 + 20921866 I

a score=-28256.000000
s ce10.chrX            3711310 79 + 17718866 TGATTAAAAT--ATATTCCTACGATGATAAAACTTTTCGCAAAATTTTGGAAATTTTTCAT-------------TTCGAGTTCAAAAAAGTTCA
s cb4.chrX             8864696 41 + 21540570 -GATT----------------TGATGAT-----------CAAGGTACAGGACAT-AATtat-------------ctttcattt-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  820705 49 -  4500979 TGATT----------------TGA--at-----------caaaacacagaaaat---cttt-------------ttttggttttggaggGTTCA
i caeRem4.Crem_Contig0 C 0 I 40
s caeSp111.Scaffold630 5817467 45 + 20921866 ------------------------CGAT-----------CAAGACACATAAAGT-TCTGAC-------------TTCTGTTGTTTGAGTTCTAT
i caeSp111.Scaffold630 I 36 I 9
s caePb3.Scfld02_0     2092251 54 +  4147112 ---------------------------------------CAACGTTTCTCAAGT-GATGAACATGTTTACACAGTTCAATTATTTTAACATTGA
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold1521  116046 59 -   152914 ------GAATAAATATCCTCTTGACGATgt---------taa---attgaaaat-attgac-------acattgttctttttttc---------
i caeJap4.Scaffold1521 C 0 C 0

a score=-21193.000000
s ce10.chrX            3711389 86 + 17718866 AAAAAGTGATGAAGGAGACTCGAAATAAAAACATTTCAAAAA------------TTTTGAATGTTTTCAGGAAAGGT------TTTTAATCATTTCCCCACTGG
s cb4.chrX             8864737 21 + 21540570 ---------------------------------tttcaagat------------ttgttCTCGATC--------------------------------------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5817521 42 + 20921866 -AAGAGTCACG--------------------tggatttcaaa------------ttttaaccGCTATGTGGCAGT-----------------------------
i caeSp111.Scaffold630 I 9 C 0
s caePb3.Scfld02_0     2092310 42 +  4147112 -AAGAAGGGCT--------------------TTGATCAAGAC------------ACATTATCGTTTAATGTCTGT-----------------------------
i caePb3.Scfld02_0     I 5 C 0
s caeJap4.Scaffold1521  116105 73 -   152914 -------------------------------ttgattgaGAAGagctccgtttttttttgttgtcactTCTCGAAGTATCAAATTTCAGTTTTCCCCCCACTTA
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  820754 40 -  4500979 I

a score=-31.000000
s ce10.chrX            3711475 537 + 17718866  
s cb4.chrX             8864758 436 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  820794 404 -  4500979  
i caeRem4.Crem_Contig0 I 40 C 0
s caeSp111.Scaffold630 5817563 421 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2092352 469 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  116178 565 -   152914  
i caeJap4.Scaffold1521 C 0 I 67

a score=6302.000000
s ce10.chrX            3712012 49 + 17718866 A-----GTGTGCAGACA----ATTGAAACACAAAAAAAAAACATCTGACGATTTTTTG
s cb4.chrX             8865194 42 + 21540570 TAT----TCTGCAGACATACGGAA----------GAAAAAACATCTGATG--TTTTTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  821198 36 -  4500979 TGGG--ATGTGCagaca----att----------gaaaaaacatcTGACG------TG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5817984 39 + 20921866 AGTGTGTGGTGCAGACA----ATG----------GAAAAAACATCTGACG-----CTG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2092821 36 +  4147112 A-----TTGTGCAGACA----GCG---------AGAAAAAACATCTGACG----TTTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  116743 67 -   152914 I

a score=272994.000000
s ce10.chrX            3712061 588 + 17718866  
s cb4.chrX             8865236 536 + 21540570  
i cb4.chrX             C 0 I 7
s caeRem4.Crem_Contig0  821234 546 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 152
s caeSp111.Scaffold630 5818023 541 + 20921866  
i caeSp111.Scaffold630 C 0 I 7
s caePb3.Scfld02_0     2092857 556 +  4147112  
i caePb3.Scfld02_0     C 0 I 12
s caeJap4.Scaffold1521  116810 613 -   152914  
i caeJap4.Scaffold1521 I 67 I 8

a score=-36701.000000
s ce10.chrX            3712649 129 + 17718866 TGAATGCTACACGTTTCCAA---AAAAGGCTAACAGAGTGCAAGTGTGATTTA---GAATTT------------------------GTGAC-CTACAATTTGTTTGA--TTCTA--ACTGTTTG-GTTTGGTTTT------CTAATGCTACTA------------------------TTATCGACTAAATTTAAA
s cb4.chrX             8865779 141 + 21540570 GAAACTTC-----TTGCAAA---ATTAACTCTTCATTAATCGAGTTTGTCTTT-----ATTCTCTcgaaaat---ta---attcaaaaatg-ctgCATGTCGTTTC----TCTA--AATAATTG-TTATGCAT--------CTAACCCCATTCAATGTT------------------TTACT-GCTTAAACTAAC
i cb4.chrX             I 7 I 1
s caeSp111.Scaffold630 5818571 122 + 20921866 caaattca-----tttcga--------------------------ttAACTTT---GCATTTTCCTaataac---taaaaaaacaaaaaactctacttcttttttc----cctgcTAATCAGTT-TGATTCATTG------CTAACACTATTT------------------------TGAGC-ATTGTAtataat
i caeSp111.Scaffold630 I 7 C 0
s caePb3.Scfld02_0     2093425 153 +  4147112 TGAAtggt-----tttcgaa---tttcaact-------------TCTAACTTTAACGaagtgtttcaatttt---tactcaTACACATAAA-CTACTTCTCATTGC----------AATGATTTATGATTGATTT------ctaacaattttcatttttccttttacAAAACAGGTGTaatt-atttgagaaaat
i caePb3.Scfld02_0     I 12 C 0
s caeJap4.Scaffold1521  117431 159 -   152914 CGAGTGCCATCTTTTTTAAATCTATCAATTTAACCTTATAGTGGTATGACATG---ACATGCTCTAACAAATGTGTGTTTATAACTTTGAA-GCACTGATCCCTTCAACACCTA--ACCCCTTT---ATGAGTTTTCCATACTAACCCTTTTC--CGTT------------------CCAGC-CTTAAA------
i caeJap4.Scaffold1521 I 8 I 1
e caeRem4.Crem_Contig0  821780 152 -  4500979 I

a score=151256.000000
s ce10.chrX            3712778 222 + 17718866 TTATCTA--ATTGCAGAGGCCTGAAGAAGACTACTATGTAATGATAGACACTGCCTCAAAGTC---CCGCCAAACCGCAACTTCAAGTTC------AGGCGAGCCTCAGGAC---CCTAGTGCT---------CCGGCAGCGGAGCAGAGGAAACAGAAGTCGACTCTTCAACAATGGATCAGCACGACCTTAACGGCAATGGCAGAAATCAGTGAACAAGTGGTGTCCGCCAGAGACGATTAAC
s cb4.chrX             8865921 233 + 21540570 -GAATCA--ATTACAGAAACCGGATGAAGACTACTATGTTATGATTGACACTTCCACAAAGTC---GAGACCATCAGCCGCATCTACTTC---AAACGGTGAAAATCAGGAA---GGCGCTGCTGGAGGAGCCCCAGCGACGGGTGAGAGGAAACAGAAGTCAACTCTCCAACAATGGATCAGCACAACGTTGACCGCGATGGCTGAGATCAGCGAGCAAGTGGTGTCAGCCAGAGACGATTGAC
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  821932 217 -  4500979 ----ttatttttccagagacCAGATGAAGATTACTATGTAATGATTGACACTGCATCCAAATC---CCGTCCATCCGCTGCATCCACTTC------TGGTGAGAATCAAGAA---GCTGGTGCT---------CCACCGGCA---GAGCGGAAGCAAAAGTCAACGCTCCAACAATGGATTAGTACAACCTTAACTGCCATGGCAGAAATCAGCGAGCAAGTGGTGTCAGCTAGAGACGACTAGT
i caeRem4.Crem_Contig0 I 152 C 0
s caeSp111.Scaffold630 5818693 218 + 20921866 tg----a--ttttcagaggCCTGATGAAGATTACTATGTGATGATAGACACTGCATCAAAATC---TCGACAGTCCGCAGCATCAACGTC------Aggagaaaatcaagaa---gGTGGAGCA---------GTACCAACAGAGCAAGGAAAACGAAAGTCAACCCTGCAACAATGGATTAGCACAACCTTGACTGCGATGGCGGAGATAAGTGAACAAGTGGTATCCGCCAGAGATGATTAAC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2093578 234 +  4147112 tgtttta--atttcagagaCCTGATGAAGATTACTATGTAATGATCGACACTGCCACTAAATCAAATCGACAGTCTGCTGCCTCCACTTCTGCTGGTGGTGAGAACCAGGAAGCTGGTGGACCA---------CCACAAACAGAGCAAGGAAAACGAAAGTCAACTCTGCAACAATGGATTAGTACAACCTTAACTGCCATGGCAGAAATTAGTGAACAAGTGGTGTCTGCCAGAGATGATTAAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  117591 222 -   152914 CTTTATA--TTTCCAGCGGCCGGACGACGAATACTACGTGATGATTGACACTGTCTCCCGGCC---AAGACCATCCGCAGCTTCTAGCTC------GGGAGAGAAGGTAGAA---ACAGCTGTC---------GTTCCGGTAGAGCAAGGAAAGCGGAAATCAACACTTCAACAGTGGATAAGTAGCACTCTAACTGCAATGGCTGAAATCAGTGAGCAAGTGGTGTCTGCAAGGGATGATTGAC
i caeJap4.Scaffold1521 I 1 I 92

a score=7076.000000
s ce10.chrX            3713000 91 + 17718866 ATTTCA-------------------ACCTCCCCCTTTTGCATT-TCGTTTTTGTTTTTTTTTCGAACTTCT------TGTCATTTCAAATTTTACAAGTAACCCGTGTCTTCAGTGA
s cb4.chrX             8866154 78 + 21540570 AGtttttattt--------------gactcatcttttttcatt------------ttttt-------tcattcccgcTGTCATTTCAA-TTATACAAGTAAGCCG-GTGT----CGC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  822149 88 -  4500979 CACTTCGATGTTGCAAccaattgaaaacaaacttctgttcaac------------atttt-------ttct------tgtcatttcaatttttacaagTAATCCGTGTTT----TGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5818911 72 + 20921866 TAT--------------------------CAATCTTGTTCCAT-TTGaatcccttttctc-------ttct------tgtcatttcaa-ttttacaaGTAACCCATTTCT----CGA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2093812 80 +  4147112 CCTTTT-------------------CCTCCCCCTTTGTTCCCTAttgaatttcgaacttt-------ttct------tgtcatttcaa-ttttacaaGTAATCCGTGTCT----CGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  117813 92 -   152914 I

a score=33572.000000
s ce10.chrX            3713091 121 + 17718866 CAC-C------------TAGC-TT-ATATTGTACGAGTGTGACAATATAT----------AGAA----CACAACACATT---TCCGGTCCTTTGA---ATAACACTTTTTCT-------------CCAGTTCTCTTATTT--CATCCACTTCCTC---------ATACCTTTTTATTTGT
s cb4.chrX             8866232 146 + 21540570 AAT-CAGTGACACACCGTAGT-TTCATATTGTACGAG-GTGACAATATATTTAGAAATCccaaa----cacaaaa-att---tctggtcCT-CAAAATCAAACACTT---CTTCGACCCCTCTG-atcgttctctttttt--------gtccCTG---------TAA-TATTTCATTCGT
i cb4.chrX             C 0 I 1666
s caeRem4.Crem_Contig0  822237 125 -  4500979 TAT-T------------TAGT-TT-ATATTGTACGAGTGTGACAATATAT----------AGAA----CACAACA-TTT---TCCGGTCTT-TGA---TTAACACTT-TGTTTTGTCC-------atcgttctcttttttctcacccAGTTTCTC---------ATA-AGTTTTATTTGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5818983 121 + 20921866 CAT-C------------TAGC-TT-ATATTGTACGAGTGTGACAATATAT----------AGAA----CCCAACA-ATT---TCCGGTCTT-AAA---ACAACACTTTTCCCTCTTCC-------Cccgttctcttcttc-----caagtttctc---------atc-atttttatttgt
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2093892 142 +  4147112 CATCC------------TAGCATT-ATATTGTACGAGTGTGACAATATAT----------AGAGCTCCCCCATCA-ATT---TCCGGTCTT--CA---Acaacacttcttcttcttcctttctcttttgttctcttttcc-----gcagtttctcattgattcaatt-atttttatttgt
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  117905 117 -   152914 -------------CCCATAGA-TA-CTATTGTACGAGTGCAAAGATATGT----------AGAA----CCCAAAA-AATACGTCCGGTCtt-------gtttcattttctttttga---------tttgttttttttttt-------acattttg---------atT-GTATCTATTTAT
i caeJap4.Scaffold1521 I 92 C 0

a score=7075.000000
s ce10.chrX            3713212 12 + 17718866 ATACAGTATGGC
s caeRem4.Crem_Contig0  822362 12 -  4500979 ATACAGTATGGC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5819104 12 + 20921866 atACAGTATGGC
i caeSp111.Scaffold630 C 0 I 635
s caePb3.Scfld02_0     2094034 12 +  4147112 ataCTGTATGGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  118022 12 -   152914 ACACCATTTGAC
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8866378 1666 + 21540570 I

a score=3309.000000
s ce10.chrX            3713224 9 + 17718866 TGAAAGCTT
s caeRem4.Crem_Contig0  822374 9 -  4500979 TGAAAGCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2094046 9 +  4147112 TAAAAACCt
i caePb3.Scfld02_0     C 0 I 1039
s caeJap4.Scaffold1521  118034 9 -   152914 TGAAAGCTG
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8866378 1666 + 21540570 I
e caeSp111.Scaffold630 5819116 635 + 20921866 I

a score=-652.000000
s ce10.chrX            3713233 12 + 17718866 GGCAACAAAAAA-
s caeRem4.Crem_Contig0  822383 10 -  4500979 --CGGTAAAAAA-
i caeRem4.Crem_Contig0 C 0 I 619
s caeJap4.Scaffold1521  118043 12 -   152914 -AAAGCTTAAAAC
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2094055 1039 +  4147112 I
e cb4.chrX             8866378 1666 + 21540570 I
e caeSp111.Scaffold630 5819116 635 + 20921866 I

a score=379.000000
s ce10.chrX            3713245 9 + 17718866 AGTAACCGA
s caeJap4.Scaffold1521  118055 9 -   152914 TGTAATTGA
i caeJap4.Scaffold1521 C 0 I 550
e caePb3.Scfld02_0     2094055 1039 +  4147112 I
e cb4.chrX             8866378 1666 + 21540570 I
e caeSp111.Scaffold630 5819116 635 + 20921866 I
e caeRem4.Crem_Contig0  822393 619 -  4500979 I

a score=0.000000
s ce10.chrX            3713254 1587 + 17718866  
e caePb3.Scfld02_0     2094055 1039 +  4147112 I
e caeJap4.Scaffold1521  118064  550 -   152914 I
e cb4.chrX             8866378 1666 + 21540570 I
e caeSp111.Scaffold630 5819116  635 + 20921866 I
e caeRem4.Crem_Contig0  822393  619 -  4500979 I

a score=268.000000
s ce10.chrX            3714841 5 + 17718866 GGATG
s caePb3.Scfld02_0     2095094 5 +  4147112 ggatt
i caePb3.Scfld02_0     I 1039 C 0
e caeJap4.Scaffold1521  118064 550 -   152914 I
e cb4.chrX             8866378 1666 + 21540570 I
e caeSp111.Scaffold630 5819116 635 + 20921866 I
e caeRem4.Crem_Contig0  822393 619 -  4500979 I

a score=91.000000
s ce10.chrX            3714846 1 + 17718866 T
s caeSp111.Scaffold630 5819751 1 + 20921866 T
i caeSp111.Scaffold630 I 635 C 0
e caePb3.Scfld02_0     2095099 0 +  4147112 C
e caeJap4.Scaffold1521  118064 550 -   152914 I
e cb4.chrX             8866378 1666 + 21540570 I
e caeRem4.Crem_Contig0  822393 619 -  4500979 I

a score=-406.000000
s ce10.chrX            3714847 18 + 17718866 TTAATTTTCATGCCGCTG--------
s caeRem4.Crem_Contig0  823012 20 -  4500979 TTAATTTCC------CAGTTTCgtgc
i caeRem4.Crem_Contig0 I 619 C 0
s caeSp111.Scaffold630 5819752 13 + 20921866 TTAATTTTG------CAGT-------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2095099 16 +  4147112 ttaattttt------cagt---gtg-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  118064 550 -   152914 I
e cb4.chrX             8866378 1666 + 21540570 I

a score=-1679.000000
s ce10.chrX            3714865  3 + 17718866 --------TCT
s cb4.chrX             8868044  3 + 21540570 --------ttt
i cb4.chrX             I 1666 C 0
s caeRem4.Crem_Contig0  823032  3 -  4500979 --------ttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5819765 10 + 20921866 TCCGT-GCTCA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2095115 11 +  4147112 CCCGTGGCTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  118064 550 -   152914 I

a score=195475.000000
s ce10.chrX            3714868 480 + 17718866  
s cb4.chrX             8868047 415 + 21540570  
i cb4.chrX             C 0 I 71
s caeRem4.Crem_Contig0  823035 468 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5819775 443 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2095126 466 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  118614 525 -   152914  
i caeJap4.Scaffold1521 I 550 C 0

a score=-10527.000000
s ce10.chrX            3715348 54 + 17718866 CAAAATCTAAAT-AAATTAATATTTTGTTAATA----------------TCAACATGGTTAGC--TGAAACTT
s caeRem4.Crem_Contig0  823504  5 -  4500979 -----------------------CCTGT---------------------------------------------
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0     2095592 12 +  4147112 ----------------CGATCAGTTTGt---------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  119139 73 -   152914 CAAAGTGTAAACGAAAAAATCAcattctcaggaaatttttggctatggCTGAAGGTGGCTAGCAATGGAAATT
i caeJap4.Scaffold1521 C 0 I 230
e cb4.chrX             8868462 71 + 21540570 I
e caeSp111.Scaffold630 5820218  0 + 20921866 C

a score=-930.000000
s ce10.chrX            3715402 33 + 17718866 TGATGTTGGATGTATAGTTTCATGTTATATGTT
s caeRem4.Crem_Contig0  823509  4 -  4500979 -----------------------------TGTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2095604  5 +  4147112 ----------------------------atgtt
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  119212 230 -   152914 I
e cb4.chrX             8868462 71 + 21540570 I
e caeSp111.Scaffold630 5820218  0 + 20921866 C

a score=-2723.000000
s ce10.chrX            3715435 55 + 17718866 AATCTATGTACATCGGTTAAGTTTTTTACAAAACATATATATTTTTGAAAATAGT
s caeRem4.Crem_Contig0  823513 16 -  4500979 ----------------------------CAAATCatcgatattt-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5820218 21 + 20921866 -----------------------gtgtattgaaaaaggatgttc-----------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2095609  0 +  4147112 C
e caeJap4.Scaffold1521  119212 230 -   152914 I
e cb4.chrX             8868462 71 + 21540570 I

a score=-6595.000000
s ce10.chrX            3715490 35 + 17718866 ATAATC----TCAAAATCTACTTGGTTTTCAGCTA-----CATA--
s caeRem4.Crem_Contig0  823529 14 -  4500979 -------------------------ttttcagatg-----cgtA--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5820239  5 + 20921866 -------------------------gtttt----------------
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  119442 46 -   152914 ataatcattttcaacggctaatagctgctCAGCAAGAACccacaac
i caeJap4.Scaffold1521 I 230 C 0
e caePb3.Scfld02_0     2095609  0 +  4147112 C
e cb4.chrX             8868462 71 + 21540570 I

a score=1520.000000
s ce10.chrX            3715525 13 + 17718866 ----------TTTTTGAAGTTTT
s caeSp111.Scaffold630 5820244 13 + 20921866 ----------tctttgtagTGTT
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  119488 23 -   152914 ttttacgcaaGCTTTGAAGTTTT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2095609  0 +  4147112 C
e cb4.chrX             8868462 71 + 21540570 I
e caeRem4.Crem_Contig0  823543  0 -  4500979 C

a score=-23914.000000
s ce10.chrX            3715538 114 + 17718866 -----------GGTGTGATTGACTTTAGG--------------------ATACAACCCTTA---------------------GCT-----------------TTGAAATCTTTTATTCACTCCTTTAAATTTTAATTTGTGCAATTAA-GACGCTGTCTCCAGG----AATGAATTTTCGAAGTCCTG
s cb4.chrX             8868533  44 + 21540570 -----------GATGTGAGTG-------------------------------------------------------------------------------------------------------TTAATTTCCAGTTTA---------------------TAGGactttatgatttttc---------
i cb4.chrX             I 71 C 0
s caeSp111.Scaffold630 5820257  20 + 20921866 ----------------------------------------------------------------------------------------------------------------------------------TTTACTGTA---------------------CAGG----TTTAATT-------------
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  119511 171 -   152914 GCAACTGTCATGAATTTAGTGAAATTTCGTGAAAAGTGCTGCCAACTTCATGCAACCCTTACACagactttacgcagctctcgctagagttgtgggtttttgctgagtcCCTATATCCATCATTTCTGCCCTGAGTTTG---AGTGAACGGACCTTACTGCAAG----CGCAATCCGG----------
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2095609   0 +  4147112 C
e caeRem4.Crem_Contig0  823543   0 -  4500979 C

a score=-9214.000000
s ce10.chrX            3715652 42 + 17718866 --------------CTATTTTTTAAAT-----------TATCAAAAAATCATAA-----------------CTTCAGATGCTTA
s cb4.chrX             8868577  9 + 21540570 ---------------------------------------------------------------------------agacgAATA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5820277 13 + 20921866 -----------------------------------------------------------------------CTACAGATGCGTA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2095609 26 +  4147112 --------------ccaatttttggat--------------------------------------------ttccagaTGCATA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  119682 84 -   152914 CCTGATACAGCGGTCTTATTCACAAGTGACCCGAGTATCATCTAAAATCCTTAAATTACAGCTAGACCTTTTTGCAGATGCCTT
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  823543  0 -  4500979 C

a score=83084.000000
s ce10.chrX            3715694 229 + 17718866 TCCGCATATAGACATCGTGTTTGCTAGAGGAGAAACTAGCTTATTAACC-AATGGGCTTATT---ACTTCAGAAAAGGACCAAAAAACTTGTGGT--------AACTTAAAACTTGTTAT-GTATTAATCAACTATTT-TAACT------------TCGCACAGGATTTTACAAAAGTGTCCAGACAATTTCACGCAACTCCACAGAGCTTCAGCTACTACCTGACTTTGAAACGAAAACCAATCTGAATGGTAA
s cb4.chrX             8868586 222 + 21540570 TCCCCATATAGATATTGTCTTTGCCAGAGGAGAAACAAATCTATCAAGA----AACATTATTGTGGCACCCGAggagaatgagaaaacttgTGGT--------G----AGCAATT-------------AAAACTGCTG-AAACTCGGAAGAGGTATCTTTTCAGGATTCTACAAAAGCGTTCAAACCATATCTCGCAGTC---CCGAGTGCGAACTTCTTCCAGAGTATGAAACGGGGAGCAATTTGAATGGTAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  823543 226 -  4500979 TCCGCACATTGATATTGTTTTTGCAAGAGGAGAAACCAGTTTAACTAGACATGGACATCAT----ACGactgaaaaagatgagaagaactGTGGT--------A----TGATATTGCCAG----TCAGAGAATTACAGCCAACT--------GTTTCTTTTCAGGATTCTACAAAAGTGTCCAAACGATATCTCGCAATTCAACAGAACTACAGCTCATCCCagatttcgaaactgaaacaaGCTTGAATGGTA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5820290 221 + 20921866 CCCTCATATCGATATAGTGTTCGCCAGAGGAGAAACTGGCCTTACCCGA-CTAGGAGTCact---tcaaatgaaaaagatgaaaaaaactgtggT--------A----TGATTTTCCAAT--TATCTGGTCCCTAAAG-AAACT---------------TTTAGGTTTCTACAAAAGCGTTCAAACTATTTCACGAAACTCCACCGAACTCCAACTTATTCCAGattttgaaacggaaaataatCTAAACGGTAA
i caeSp111.Scaffold630 C 0 I 17
s caePb3.Scfld02_0     2095635 223 +  4147112 TCCACATATTGATATTGTGTTTGCTCGAGGAGAAACAAGTTTAACAAGG-GTTGGTGTTACT---GGTCCCGAGAAAGATGAATCGAATTGCGGT--------A------ATTTTAC-------TCAAATTGTTAAGA-AATAT-----TAACATTTTATTCAGGATTTTATAAAAGTGTGCAAACTATCTCTCGAAACTCAACTGAACTCCAACTCATACcagatttcgaaacagaaacaaatttAAATGGTA-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  119766 229 -   152914 TCCTCACATTGACATTGTTTTTGCTCGAGGAGAAACGGGACTTATCCGT---AGTAACCAT----TCTACTAACCAGGATGAGAAAACATGTGGTTTGCACACA----AAATATTGTGATAAAATGAATTCATTTAAA-TCACT--------------TTTCAGGGTTCTACAAAAGTGTTCAAACCATATCTCGCAATTCAACGGAGCTGCAGCTAAAGCCAGATTACCCTACAGAAGAAAATCTGAATGGTAA
i caeJap4.Scaffold1521 C 0 I 1

a score=-7145.000000
s ce10.chrX            3715923 25 + 17718866 ATATATTTTTTATAGTCACATTCTT-
s cb4.chrX             8868808 15 + 21540570 ----------GCGAATCTTTATTTG-
i cb4.chrX             C 0 I 8
s caeRem4.Crem_Contig0  823769 13 -  4500979 ------------GAAATTTCTTTCG-
i caeRem4.Crem_Contig0 C 0 I 9
s caePb3.Scfld02_0     2095858 19 +  4147112 ------CTTGACTAATCTTGTTCTC-
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold1521  119996 24 -   152914 --ATGTGCACTGAATTGTTCATTTTA
i caeJap4.Scaffold1521 I 1 C 0
e caeSp111.Scaffold630 5820511 17 + 20921866 I

a score=95024.000000
s ce10.chrX            3715948 170 + 17718866 -CTGATACACT--------TGTTTAAGGTTATGTAATATTTGCGTACAACACCATGGAACACATGCATACCCCCAAATTCACAACATCTTGGAAAACATGGTCTGGTGCTAGAATGTTGAGCACGAGAATGCCCTTGCCACATATTGTAACAAAGTAT----------GTTTTTATTCGTTCACAGAAG--
s cb4.chrX             8868831 174 + 21540570 ----AAACTTA----TCAAAATTCTAGGGTATATGGTTTTTGCGTACAAGACAATGGAGCACATGCACACTCCAAAGTTCACGAGCTCGTGGAAAACATGGTCCGGAGCTAGAATGCTGAGCACACGGATGCCTCTACCGCATATTGTCACAAAGTAG-----GTCggatttgttgtttttcggAAG----
i cb4.chrX             I 8 I 749
s caeRem4.Crem_Contig0  823791 159 -  4500979 ---CAAACATG----AGAGTGTTACAGGTTATGTAATTTTTGCTTACAAAACAATGGAACATATGcatactcaaaaattcacgAGCTCTTGGAAGACATGGTCGGGAGCACGAATGTTGAGTACACGAATGCCACTGCCACATATTGTCACAAAGTA---------------------TTTCACAGG----
i caeRem4.Crem_Contig0 I 9 I 2
s caeSp111.Scaffold630 5820528 182 + 20921866 -CTGAAACATATTCAAGGTTATTGTAGGATATGTGATTTTCGCATACAAAACGATGGAACACATGCACACGCAGAAGTTCACGAGTTCTTGGAAGACGTGGTCAGGTGCACGGATGTTAAGTACGAGAATGCCCCTACCACATATTGTCACGAAGTAGGCT--ATCATTCAATCATTATTTCTTA------
i caeSp111.Scaffold630 I 17 C 0
s caePb3.Scfld02_0     2095880 172 +  4147112 -TTGAAGC-------AAGTTGTTCCAGGTTATGTAATTTTTGCATACAAAACTATGGAGCACATGCATACACAAAAGTTTACAAGTTCTTGGAAAACATGGTCAGGAGCACGGATGTTGAGCACAAGAATGCCTCTTCCTCACATTGTCACAAAGTAA-----AACACACTATGAGCTGCCAATG------
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  120020 183 -   152914 CTTCAATCATT------TTTAACCTAGGCTATCTAATTTTCGGCTACAAAACTATGGAGCACATGCACACCCCAAAGTTCACCAGTTCCTGGAAAACCTGGTCAGGCGCACGAATGCTCAGTACGCGAATGCCACTTCCACATATTGTGACAAAGTGagattgtttatttttatactcggtataaaa--cg
i caeJap4.Scaffold1521 C 0 C 0

a score=1149.000000
s ce10.chrX            3716118 6 + 17718866 TCGAAA
s caeRem4.Crem_Contig0  823952 3 -  4500979 ---ATA
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold630 5820710 6 + 20921866 TGAAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2096052 6 +  4147112 TTGATA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  120203 6 -   152914 ctgaaa
i caeJap4.Scaffold1521 C 0 I 483
e cb4.chrX             8869005 749 + 21540570 I

a score=-2310.000000
s ce10.chrX            3716124 8 + 17718866 TAATT--GTG
s caeRem4.Crem_Contig0  823955 7 -  4500979 Acatatg---
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5820716 5 + 20921866 CCATT-----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2096058 5 +  4147112 ACATT-----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  120209 483 -   152914 I
e cb4.chrX             8869005 749 + 21540570 I

a score=273.000000
s ce10.chrX            3716132 1 + 17718866 T
s cb4.chrX             8869754 1 + 21540570 t
i cb4.chrX             I 749 C 0
s caeRem4.Crem_Contig0  823963 1 -  4500979 t
i caeRem4.Crem_Contig0 I 1 C 0
e caePb3.Scfld02_0     2096063 0 +  4147112 C
e caeJap4.Scaffold1521  120209 483 -   152914 I
e caeSp111.Scaffold630 5820721 0 + 20921866 C

a score=138838.000000
s ce10.chrX            3716133 223 + 17718866 TT---------TTACAGAATGTCATTTTTCAAAAAAGTTTCCGGTCATCTGACGTTTGAATACATTTTGATTGCAAAAGTGAAAAACATGATGGTTG----CCATTCAAT----TACATTTGAT---TATTTCAAAACACCATTATTGCAGGTAAACGCTGCTCCAGCGTTGAATGTTCTTCATTACATGAAGCCAAAACTTTGCGCGTATGTTGGAGCATATAGAAAAATATCATTTGAGGT
s cb4.chrX             8869755 223 + 21540570 tt---------ttccagattatcgtttttcaaaaaagtctctGGACAGCTAAACTTCGAGTACATCCTAAttgcgaaaatcaaaaatatgatgGTAA----CATTTCAAT--TCCAGACTTAATATCTCA-CCGAGTTGTAA----TACAGGTGAACGCCGCTCCAGCACTGAACGTACTTCACTACATGAAGCCAAAAGTTTGTGCTTATGTTGGAGCCTATCGCAAAATATCGTTCGAGGT
i cb4.chrX             C 0 I 5
s caeRem4.Crem_Contig0  823964 230 -  4500979 ttcaaaatcgaTTTCAGAATGTCTTTCTTCAAAAAGGTCTCCGGCCAACTCAATTTCGAGTATATTTTAATagcgaaaatcaaaaacatgaTGGTTAGTCTTACTTAATT-GTCCCGTTTCTAT---TCG-TCAGATTG--------ATAGGTGAACGCTGCTCCAGCTTTGAACGTCCTTCATTACATGAAACCAAAAGTGTGTGCATATGTCGGAGCATACcgcaaaatttcttttgaGGT
i caeRem4.Crem_Contig0 C 0 I 59
s caeSp111.Scaffold630 5820721 215 + 20921866 -----------TCACAGgatgtcatttttcaaaaaagtttcgggTCAGCTGAATTTCGAGTATATTTTAATagcgaaaatcaaaaatatgatggtga----gaa----------caaaaataat---tcgaCCAAACAATTAATTATTCAGGTGAATGCTGCTCCAGCACTGAACGTTTTACATTATATGAAACCGAAAGTATGTGCGTATGTGGGAGCataccgaaaaatttcgttCGAGGT
i caeSp111.Scaffold630 C 0 I 11
s caePb3.Scfld02_0     2096063 220 +  4147112 ---------TGTTACAGgatgtcatttttcaaaaaagtgtctgGACAGCTCAACTTTGAATATATACTgattgcaaaaatcaagaatatgatggtga----ttctt--tt--tttgaaacctat---t---CTGAATTCGTATCTGTTCAGGTGAATGCTGCTCCAGCACTCAACGTTTTACATTACATGAAGCCAAAAGTTTGTGCATATGTTGGGGCGTATCGCAAAATTTCATTCGAGGT
i caePb3.Scfld02_0     C 0 I 5
s caeJap4.Scaffold1521  120692 222 -   152914 ---------TCTTGTAGAATGtcattcttcaaaaaaacatCGGGACAACTCCCCTTTGAGTACATTCTTATTGCAAAGATTAAGAATATGATGGtaa------gttcaatttttttgatttaac---ttttcctgacac---tttttttAGGTAAATGCTGCTCCAGCTCTCAACGTGCTACATTACATGAAGCCAAGAGTGTGCGCTTATGTAGGAGCTTATCGAAAAATACCATTTGAAGT
i caeJap4.Scaffold1521 I 483 C 0

a score=-6441.000000
s ce10.chrX            3716356 38 + 17718866 ---------GGAGAATTCAAAAATCTGAAAGGTTTTGAAGTTC--------TACA
s cb4.chrX             8869983 34 + 21540570 ---------CAAAAACTAATGAGTTCCCAGAAC----AAGTTT--------TCTA
i cb4.chrX             I 5 I 14
s caeSp111.Scaffold630 5820947 42 + 20921866 ---------TGGGAACTcgtaaaacaaaaaaat----gagtcattGGAAATGcta
i caeSp111.Scaffold630 I 11 I 7
s caePb3.Scfld02_0     2096288 34 +  4147112 ---------TGGAAGCTcgtaaaacaagaaaat----gagcCA--------GCTA
i caePb3.Scfld02_0     I 5 I 10
s caeJap4.Scaffold1521  120914 32 -   152914 CTATACGGTTGCAAAGGCAAAAAAGAGCAATA-----------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  824194 59 -  4500979 I

a score=163908.000000
s ce10.chrX            3716394 262 + 17718866 TATTT--TTCAGGTAAATAGAAATTTGTGCCGTAGTCTTGGACTGGCCGAAGCAAACTACGCAGACGCACTGACAAATCGATTTCGAGTATCATACAGTAATAATACT---------------------------------------------------------------------GGATATGTCGAGATGTCGAAATTTATTGAGTATAGGTGTAAAGAAGAAGAAGAAGAAGCGAGAGCAGCAAAAGAAAAGCTTGTCAAAAAGTCAACTCATGTACAAACAGAACCAACGGACACCTTAAGAAACATAAGGAAAAAGTTACCGAGGC-------------------AA
s cb4.chrX             8870031 308 + 21540570 TTTTT--TGCAGGTTAACAAGAGTTTGTGCCGCAGTCTTGGACTTATGGATGCTAATTATGTGGACGCAATGACCAACCGATTCCGAGTCACCTACAGTAACAACACTGGTAATCATTTTCaaggactttttgaaaaatctgtgtTTTGT-----------------------TTCAGGGTATGTCGAGTTATCAGATTTCATCGAGTTTCGTTGCAAGGCGGAAGAGGAAGAGGCAAGAGAAGCCAAAGAGAGACACATCAGGAAGTCGACTCATGTTCAGACTGAACCGACTACATCATCGAAAAATGCACGGAGAACATTGCCAAGGT-------------------GA
i cb4.chrX             I 14 C 0
s caeRem4.Crem_Contig0  824253 316 -  4500979 TTTTT--TACAGGTCAACAAGAATTTGTGTCGCAGTCTGGGACTTTTAGATGCTAATTATGTGGATGCATTGACAAATAGATTTCGAGTCACTTACAGTAATAACACAggtaattctttt-------tttttctaaaattactTCCTCGTA-ATAAGC------AAAGT-GGATTCAGGTTATGTAGAGCTATCCAATTTTATTGAGTATCGTTGcaaggaggaagaggaagaggcaCGAGAAGCTAGAGAGCGACATATTAAAAAGTCAACTCATGTTCAGACGGAACCAACTGAATCTTCGAAACATGCTAGGAGAACTTTACCAAGGT-------------------AA
i caeRem4.Crem_Contig0 I 59 C 0
s caeSp111.Scaffold630 5820996 324 + 20921866 gtttttgtgCAGGTCAGTAAAACTCTGTGTCGGAGTTTGGGATTAGTGGATGCTAATTATGTGGATGCGTTGACAAACCGCTTCAGAGTCACCTACAGTAACAATACAGGTAGAC---------------------AGCATATGTGGTATA-ATAAAA------GAGATTGCATTCAGGATACGTTGAGTTATcgaatttcattgaatttcgTTGCAAAGCGGAGGATGAAGAAGCGAAAGCAGCAAAAGAAAGACATATCAGGAAATCAACTCACGTGCAAACCGACCCTACCGAATCATCTAAAAACGCTAGAAGAACATTACCTAGGTAATTGGAGTTATTCTCTAAGA
i caeSp111.Scaffold630 I 7 C 0
s caePb3.Scfld02_0     2096332 307 +  4147112 ATTCT--TGCAGGTCAGCAAAAGTTTGTGTCGCAGTCTTGGACTTATTGATGCCAACTATGTTGACGCCTTGACCAACCGCTTTAGAGTCACATACAGCAACAATACAGGTTTGCC-------------------AAGTGAACTCAGATTT-GTAGAACTCTGTGATAT----TTTAGGGTATGTCGAGCTATCGAATTTCATAGAGTTTCGCTGCAAagccgaagaagaagaggctAGAGAGGCAAAAGACAAACATATCAGAAAATCAACTCATGTTCAAACAGAACCTACCGAGTCATCCAGGAGAGCAAGGAGAACATTGCCAAGGT-------------------GA
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold1521  120946 320 -   152914 -TAAT--TTTAGGTCAACATAAATTTGTGTCGAAGTTTGGGCTTAATAGATGCTAATTACGCCGATGCAATGACCACCCGTTTTAGAGTTTCGTACAGTAATAACACAGGTgaaat----------cattttgaaaaatcaatggaGGTAACATGAAATTAAATGCAAATTCTTGCAGGTTATGTTGAGCTGTCAGATTACATTGAATTCCGATGCaaagaggaagaggaagaagctAAAAGTTTTAGAGAGAGACCTCTTAAAAAGTCAACAAAGGTGCAGACAGAGCCAACAGAATCTTCAAGAACTTCTAAAAGGACTTTGCCAAGgt-------------------aa
i caeJap4.Scaffold1521 C 0 I 9

a score=-9293.000000
s ce10.chrX            3716656 23 + 17718866 GT--TTAGGTTACCAAAAGTATAAT--------------
s cb4.chrX             8870339 39 + 21540570 GGGGAcgggaaattgaatttccgatAAATAAAGTGAATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  824569  2 -  4500979 GG-------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5821320  7 + 20921866 GC------------------ATGAT--------------
i caeSp111.Scaffold630 C 0 I 95
s caePb3.Scfld02_0     2096639  7 +  4147112 GC------------------CTTAT--------------
i caePb3.Scfld02_0     C 0 I 3
e caeJap4.Scaffold1521  121266  9 -   152914 I

a score=-69149.000000
s ce10.chrX            3716679 496 + 17718866  
s cb4.chrX             8870378 564 + 21540570  
i cb4.chrX             C 0 I 79
s caeRem4.Crem_Contig0  824571 246 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0     2096649 308 +  4147112  
i caePb3.Scfld02_0     I 3 C 0
e caeJap4.Scaffold1521  121266   9 -   152914 I
e caeSp111.Scaffold630 5821327  95 + 20921866 I

a score=-630.000000
s ce10.chrX            3717175 30 + 17718866 AAAAATCAATATAATTTGTGAACAGTTTTA
s caeRem4.Crem_Contig0  824818 24 -  4500979 ACAGAGAGATAAAGTTCCTATTTA------
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0     2096957 29 +  4147112 -AACATTCATATGTTTCTTAGCCAGCTATA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  121266  9 -   152914 I
e cb4.chrX             8870942 79 + 21540570 I
e caeSp111.Scaffold630 5821327 95 + 20921866 I

a score=387.000000
s ce10.chrX            3717205 4 + 17718866 -CTTT
s cb4.chrX             8871021 4 + 21540570 -cttt
i cb4.chrX             I 79 C 0
s caePb3.Scfld02_0     2096986 5 +  4147112 TATTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  121266 9 -   152914 I
e caeSp111.Scaffold630 5821327 95 + 20921866 I
e caeRem4.Crem_Contig0  824842 0 -  4500979 C

a score=-1529.000000
s ce10.chrX            3717209 12 + 17718866 AAACAATTTTTG-
s cb4.chrX             8871025 12 + 21540570 aaacgaaatttc-
i cb4.chrX             C 0 I 5
s caePb3.Scfld02_0     2096991  4 +  4147112 AAAC---------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  121275 12 -   152914 -aactaatgATAG
i caeJap4.Scaffold1521 I 9 C 0
e caeSp111.Scaffold630 5821327 95 + 20921866 I
e caeRem4.Crem_Contig0  824842  0 -  4500979 C

a score=-9203.000000
s ce10.chrX            3717221 854 + 17718866  
s cb4.chrX             8871042 774 + 21540570  
i cb4.chrX             I 5 I 1
s caeRem4.Crem_Contig0  824842 738 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5821422 799 + 20921866  
i caeSp111.Scaffold630 I 95 I 7
s caePb3.Scfld02_0     2096995 866 +  4147112  
i caePb3.Scfld02_0     C 0 I 58
s caeJap4.Scaffold1521  121287 837 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-7393.000000
s ce10.chrX            3718075 33 + 17718866 GAAA--AACTAATAAAGAAAAAAGAGGCCAGACCG
s cb4.chrX             8871817 26 + 21540570 aaattgaatgagtaaaaaaacaaaag---------
i cb4.chrX             I 1 I 4
s caeRem4.Crem_Contig0  825581 24 -  4500979 GAAT--AATAGGAACGACCAAAAACT---------
i caeRem4.Crem_Contig0 I 1 I 4
s caeSp111.Scaffold630 5822228 12 + 20921866 aaat--aaaggaaa---------------------
i caeSp111.Scaffold630 I 7 I 5
s caeJap4.Scaffold1521  122124 14 -   152914 ----------GAGAAGACagaacg-----------
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2097861 58 +  4147112 I

a score=54648.000000
s ce10.chrX            3718108 195 + 17718866 --AAA--------------------------TTTTCAAGCAAATAGTATTGTTTT--TTTTTCGTTTAGCAAAAAA----------TAACTTTTAG--------------------TATTCA--------------------------TAAAACGAAACACA----CAATTTCAGAGACGATGGATCATTACTACGACACCTAAAAACCAAGTATTTCAACTCGGAAGAATATACATCCGCCGAGTTTTGCAAGCATATGCCAAAATAGGAATCTTGAAC----------TTTCA
s cb4.chrX             8871847 199 + 21540570 --TAA--------------------------TTTCTA----------------TT--GTTTAGATTCAACGaggaaacatttttagaaattttaaa--------------------taagTA------------------GAAATTCTTAGAAtagcaatta----ttttttcagagacgACGGGGCACTGCTTCGTCAACTCAAAACGAAGTACTTCAATTCAGAAGAATACACATCGGCCGAGTTTTGCGAACATGTTGCAGAATAGGCAATCCGTTT--CAA------GATA
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0  825609 216 -  4500979 --TAT--------------------------TCTTCC----------------TT--Gtt---gttttttggagaattaatttcatgaaatttatAATTCACCATTTCAAATCCTTTCATTT------------------TAGTTTcctggaaaaacaagaaaaaccaaTTGCAGAGACGATGGGGCACTACTGCGTCAACTGAAAACTAAATACTTCAATTCGGAAGAGTACACATCAGCCGAGTTTTGCGAACATGTGCCAAAATAGGAAATTTGGAT--CAG----------
i caeRem4.Crem_Contig0 I 4 C 0
s caeSp111.Scaffold630 5822245 242 + 20921866 --aaaggtaCATCCCTCTTCgtcttttattcttttta----------------atGGCTATTGACTGGACGaggaacaatttt---ttgttttgaa--------------------tatttgaatctggaatttcaCTATTCCTTCACTAAAAACA----------TCATTTCAGAGATGATGGGACCCTACTGCGACAACTGAAAACTAAGTACTTCAATTCCGAAGAGTACACATCAGCCGAGTTTTGCGAACATGTGCCAAAATAGGAATCTCGGAT--CGGGCACTTgtca
i caeSp111.Scaffold630 I 5 C 0
s caePb3.Scfld02_0     2097919 185 +  4147112 --aaa--------------------------tttcaa----------------at--cta--------------------------atACTTCGAA--------------------TCTTTg------------------cccatttctgaaaacaaagagaaagtCAATTGCAGAGATGATGGAGCACTACTACGACATCTGAAAACTAAGTACTTCAATTCAGAAGAGTACACATCAGCCGAGTTTTGTGAACATGTGCCGAAATAGGAATCTCGGATAACGGCCACTTGtca
i caePb3.Scfld02_0     I 58 C 0
s caeJap4.Scaffold1521  122138 188 -   152914 aaaaa--------------------------aattga----------------tt--tctcTGCTTGAATAACCATGCGTCTT-------CCTCAA--------------------TTGTTA------------------CGCTGTACCGAAAATATA--------TAATTTCAGAGACGACGGAGCTCTGTTGCGGCGACTGAAAACAGAGTACTTCAATTCGGAAGAGTACACAGCCGCTGAGCTATGCGAATGTTCTGCAGAATAAAACTCCTACGC----------GTTTA
i caeJap4.Scaffold1521 C 0 I 4816

a score=-4185.000000
s ce10.chrX            3718303 13 + 17718866 AGCCTTTTGTTAT-----------------------------
s cb4.chrX             8872046 13 + 21540570 CCCCTCTTATCCT-----------------------------
i cb4.chrX             C 0 I 39
s caeRem4.Crem_Contig0  825825 12 -  4500979 -TCCTCTTGTCAt-----------------------------
i caeRem4.Crem_Contig0 C 0 I 26
s caeSp111.Scaffold630 5822487 36 + 20921866 tctctctcttttttcaatacttc------TTGAAAGGTTTTC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2098104 42 +  4147112 cttctcctttttttcatcatttctatcttttgaaatcttttc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=1441.000000
s ce10.chrX            3718316 32 + 17718866 AAGATT--------AAAGCATCTCGCATCATG--ATATCAAG----
s cb4.chrX             8872098 45 + 21540570 -GAGTTTTTCGAGCAAAGCGTTTTGCGTCATCAATaacttttcaga
i cb4.chrX             I 39 I 13
s caeSp111.Scaffold630 5822523 33 + 20921866 AGGATT-------CAAACTATTTGGcgtcatt--cttttttt----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2098146 33 +  4147112 agGATT-------CAAACTATTTGGCGTCATT--CTACTtgt----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeRem4.Crem_Contig0  825837 26 -  4500979 I

a score=-10840.000000
s ce10.chrX            3718348 100 + 17718866 CTTGTTTT--------------------CAATTTTTTTGTCACAAATTCGTTTTTTAAATG-----CGTTCAACCTTTATCTTGAAGCTT------TCGTGTTCTTTGAAAATTTGATGTCTAACAATAGA----
s cb4.chrX             8872156 100 + 21540570 ctttttttcaacttttacgt------tgtctttttgctttttgaaa-----gttccaatCC-----ATATATGCTTTTTAATC----CTTCTCAAAAACCATTCATTCAATTTC-----TCAAAG----------
i cb4.chrX             I 13 C 0
s caeRem4.Crem_Contig0  825863 124 -  4500979 ttctttttgaagttgtccggatttgacgtattttttctttttcaaa--catttttcagttttcttgatCTCAACCTTTAATTCTCAACTTCTTATACTatgttctttgaaaatt-----ttgaacaataga----
i caeRem4.Crem_Contig0 I 26 I 38
s caeSp111.Scaffold630 5822556  84 + 20921866 cttttttc--------------------tatttctcta---------------tcaaaatt-----ttcgaattctttctttc--atttcaattttttgtgttctttgaaaatt-----gcaaACAATT----GA
i caeSp111.Scaffold630 C 0 I 29
s caePb3.Scfld02_0     2098179  99 +  4147112 ctttttccg-----------------tttttttctcgattctca-------tttcaaactt-----ttctcaaccttcatttt---tctcttttatttgtgttctttgaaaattc----tcaaacaatGGATAGA
i caePb3.Scfld02_0     C 0 I 29
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-1866.000000
s ce10.chrX            3718448 11 + 17718866 ATGCTCGTCAG------
s cb4.chrX             8872256 11 + 21540570 ------ATCCCGGATTC
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5822669 12 + 20921866 ATGAACATTCAG-----
i caeSp111.Scaffold630 I 29 C 0
s caePb3.Scfld02_0     2098307 12 +  4147112 ATGAACATTGag-----
i caePb3.Scfld02_0     I 29 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeRem4.Crem_Contig0  825987 38 -  4500979 I

a score=49782.000000
s ce10.chrX            3718459 218 + 17718866 TCCGGAAATC-AGATTTTGAAATAAAGGTA------AATCTGCGTTTGATGACGATTCTCTCA----------TACCGGATGAGCACC-ATCACTTCACAATTTC------ACAAAGTTC-T---TCTTCTC--------------CTT----------TTTTTTTGTTTCTT---G-TTATCTGGTTTGAAT---TTTTGCTA---------GAAAATAAAG--------CTGGTTTCTTCC------------------AAAGATTAAAACCAAAAAACGTGTGAATTGAATGTGTCAATTACAT-GGAAA-
s cb4.chrX             8872267 270 + 21540570 Accggaaatc-aaaatt--caataaaagtATAGAGTAAAACGGATTTAATGACGACAGTAGGAGTGGTGTAGCTCCCGGATGAGCATCAAAAGCATCA----AGC-CGCTGACAAGttttac---tctttttggtctgtttcgggtttt----------tatttcctttcttt---tcttttttgat-tgagT---GTGTCTAACCAAATAgtcaaaacaaaatgaaaaagtgggaT--TTCC--TTTCTGTgctcatttgaa------aaatagaaaaacgt----AGTGAATGTGTCAATTACAT-GAGAA-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  826025 257 -  4500979 TCCGGaaaccaaaaact--gaataaaagttgaaaaaaaaac--atttgatgaCGATAGTAGCA------------CCGGATGAACCTC-AGAGCATCAGATTAAT-CGGTAACAAGTTTTAC---TCTTTCTGGtctgtttcatttctt----------ctcttcgtttgctt---t-ttttccaat-tacaTTTCATGTTCAA--aggaaatcaaaacaaaa--------cggGTT--TTCC-----ATGTGCTCGATTGAAATGCGGAAACCAGAAAACGT--GGAGTGAATGTGTCAATTacat-ggaaa-
i caeRem4.Crem_Contig0 I 38 I 411
s caeSp111.Scaffold630 5822681 260 + 20921866 TCcggaaatc-aaaatt--gaataaaagtA-AGAGTATAAAGGATTTGATGACGATAGTAGCT------------CCGGATGAGCATC-AGTGCATCAGACTGCT-CGTTGACaacttttat---tctttttggtttgttTCAAGATTGGTCGTCAGTTTTCTCCCGTTTTTTCGCT-TCATCTAG------T---CTCTTTGG------AACCAAAACAAAC--------TGggct--ttctttttcttcttctcaattgaaatgaggaaaCCAGAAAAC-------GTGAATGTGTCAATTACACAAGAAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2098319 245 +  4147112 tccgaaaatc-aaaatt--gaataaaagta-AAAGTAAAACGGATTTGATGACGATAGTAGCT------------CCGGATGAGCATC-AGAGCATCAGACTGCTCCGTTGACAAGTTTCACTCATCTTTTTGGTTTGTTTCGAGATTg----------ctcttccattcttt---t-tcatttagc---AAT---GTCTGCAG------TACCAAAACAAAA--------CGAGTT--CTCCGTTTT-------------AAACAAGGAAACCAGAAAACGT--GGAGTGAATGTGTCAATTACAT-AGAAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-510.000000
s ce10.chrX            3718677 26 + 17718866 TGTGCAGTA------GTTGTTTTTTTTGT-GA-T
s cb4.chrX             8872537 26 + 21540570 ----CAGGAggca--gttgttttttttttcga--
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5822941 30 + 20921866 --TACGGAAATCTTCGTTGTTTTGTCTAT-GAT-
i caeSp111.Scaffold630 C 0 I 670
s caePb3.Scfld02_0     2098564 29 +  4147112 --TACGAAATtcatcgttgttttttttct-at--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeRem4.Crem_Contig0  826282 411 -  4500979 I

a score=-620.000000
s ce10.chrX            3718703 12 + 17718866 GATTGAGAGACG---
s cb4.chrX             8872563 12 + 21540570 ---aaaaaagagaca
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2098593 12 +  4147112 gattcaGAAGTG---
i caePb3.Scfld02_0     C 0 I 1645
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5822971 670 + 20921866 I
e caeRem4.Crem_Contig0  826282 411 -  4500979 I

a score=100.000000
s ce10.chrX            3718715 1 + 17718866 C
s cb4.chrX             8872575 1 + 21540570 c
i cb4.chrX             C 0 I 4121
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5822971 670 + 20921866 I
e caeRem4.Crem_Contig0  826282 411 -  4500979 I

a score=0.000000
s ce10.chrX            3718716 1081 + 17718866  
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5822971  670 + 20921866 I
e caeRem4.Crem_Contig0  826282  411 -  4500979 I

a score=812.000000
s ce10.chrX            3719797 275 + 17718866 GTTCAGTAAGTGTGGGAGGAGGAGTAAAGTATTGCTATCTTTCGCTCTCTTCTCCTTAGCTGACCATTATTCTTTGCATTGCTTCGGAAACGAAATCACGCAAAAGCTTTTCAGCGAGTTTTCCAAAATTTTAAAGAATCTACTTT---------TGAACGTGAATGGCCATGTTGTGTTGTGCGTGGGTTGTT-------------------------TTCTATTTTCCATGA-AATGTTTCCTCCATTTGTCC----CTAGATTTCACTTAAAGCTTACATTCAGCATTTTCCTTGTCCCATGCTTATTGTC
s caeRem4.Crem_Contig0  826693 280 -  4500979 GTTAGGTTGGTGTGGGAGGGG--------------TTTTGTACATTGccttttcctcaatttctc----cTATCTGCATCACTTCGGAAATTGAATCAGTCGAGAGCTCTTCATAGA------CAATGTC-----GAATCTTCTTTAACGCTTTCTGAAC-TATATGAGCTTGTTATCTTCAGC-TCAACTGTTCTGGCATCAGATCAAATGtaattcattttgttttgcATTACACTAGCCCCTTTGTATTtccttttctaaaattga---aaagaagaaagctgCCAACTTCCACTTCTTTTGTTTGATTTA
i caeRem4.Crem_Contig0 I 411 C 0
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5822971 670 + 20921866 I

a score=11072.000000
s ce10.chrX            3720072 150 + 17718866 ----TCATGTATACATTGATAAATGTGGGCTT---------AATCCTCTTGAAACTTGCACATTCCCAACTTGACGTCAAGCGCGTTTTGGAGTTATTTTAGGATTTTGTTTTATGATAGAACACTGTTTTTTCGA--------GTTTTC-AAGTGCAACATATATTTTTGT
s caeRem4.Crem_Contig0  826973 156 -  4500979 TAAATTGTACATACCATGATAAATGTGAATTTACTCCTCCTAATCCTCTTGAATACT--------CCAGCTTGACGTCAAGTACTTCTGAGATCTTGTCCAa---tctattttaaaatat----ttttcatctccA-ATGTATACTTTCTGGAGTAGACCATATATTTTCGT
i caeRem4.Crem_Contig0 C 0 I 675
s caeSp111.Scaffold630 5823641 143 + 20921866 ----TCGTACACATATTGATAAATGGGCGTCT-CCAAACTTAATCCTCTTGAATTTT--------CCAACTTGACGTCAAGCATCTCTGAGATCTGTTTCAG---TTTATTTCAG------------TCCTCTCCATGTGTACAATTTTT-AAGTAGACTATATATTTTCGT
i caeSp111.Scaffold630 I 670 C 0
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I

a score=65.000000
s ce10.chrX            3720222 56 + 17718866 T-TTCTACACACTTCATCCGTTTTTTTCTGAGAACTTCACAAGACGT-TGTGAAGTTT
s caeSp111.Scaffold630 5823784 45 + 20921866 CAGTCTATAC-------------TTATCGATGGACAGCACTAGACATGTCTGAAGTTT
i caeSp111.Scaffold630 C 0 I 989
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeRem4.Crem_Contig0  827129 675 -  4500979 I

a score=0.000000
s ce10.chrX            3720278 499 + 17718866 GTAATAATTTATGGTTGGCCTAAAGTTATCTGAAATTTGAATGGGGGAGAAAAACAAAAATGACGGGATTTTTTCTGCAATTGAGAATTCTGAAAAAGACACGATGTGGTTTGATATGTAAATATTCGGATTGCATTTGAAAACTTTGGTATACGTTTTGAAAATAATTGTTCTTACTATTAGTTTAAAAATATTGAGTAAAGTATTAGTAAAGTATACGTATTAAAAGACGTGAAGTATGCATTCACTGTATCACAGACTTCACGTCCATATTAGTTGTGCTGTCTTAAGGACTAACTGTATTAAAAACCTCACATACTAGTATTGTGGATTCACGATGCACGCACCACTAACCAAATACGCAAAATTAGGAAATTAAAAAACTGAAGGCCCTTTACAGCAAACGTTGTTCTATGTTTTCGGCATTGTCAAGTTTTCGATTTTTGTATTTTTTGAAAAACCGCCCACGTATGTCCTTTCTTCGTGGCTTAGGGTATTG
e caePb3.Scfld02_0     2098605 1645 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  827129 675 -  4500979 I

a score=674.000000
s ce10.chrX            3720777  87 + 17718866 TTTTTTTTCTTCCTAAAATGGTTT-----TCTTCTAGTCTTAACTG---------TGTGCTCCCTTGGG-----CACCGATTATTTTGACAACTAGCCATA--TAAAG
s caePb3.Scfld02_0     2100250 108 +  4147112 ttttttttctcattcagaAAGTCTGAGAACTTTTGAGTATGAACTCCAACCGAACTGTGCTTCTTCAAGAGTTCCCCCgatgttttgaacattttgacaTAACTTCAG
i caePb3.Scfld02_0     I 1645 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  827129 675 -  4500979 I

a score=22572.000000
s ce10.chrX            3720864 150 + 17718866 AAAAAGTTGGGTGAATGTGCGTGAAGATGAAAG-CTTTTCTCCAAATTGTTGTGATATA-CGGAGACATGC---GCTCGCCAACACACGCATTACCAAACATGTCGAAAAATGAAAACAAAACTGACAAGTTGGTGAGAATTTTTTTTCGGATAT
s caeRem4.Crem_Contig0  827804 142 -  4500979 aaaaagttag--gAGTGCGCatgaaaatgttag-tttttctCCAAATACTTGTGATATT-CGGAGACCTCC---GCTGAGCAACCCACGCAATGCTAAACATGTcgagaaatcaaaacaaaactgaCAAGTTGGTAAGA------TTTCGGATAC
i caeRem4.Crem_Contig0 I 675 I 122
s caePb3.Scfld02_0     2100358 139 +  4147112 -AAAAGTCG---------ACATGAAAATGAAAGCTTTTTCCACGAATAGTTGTGATATTCCGGAGACCTCCCATGCTCGGCAACCCACGCATTGCCAAAcatgtccgaaaatcaaaacaaaactgacaAGTTGGTAAGA------TTTCGGATAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I

a score=-389.000000
s ce10.chrX            3721014 117 + 17718866 TCGATTCTACCCGAAGTTCCTCAGTGTTTCCAGTTTAAGGAACCATTTTTTTTAATCAAAATCTATATGAAACCAAACTACAGAGTCAAATTCCAAAGAAGACCACATTTTAGAAAA
s caePb3.Scfld02_0     2100497  97 +  4147112 ACTTGGGTATCCCA--TTCCTCGCTTAGACAATATGACgtattgatatttttt--------tctttat---------cttcaaagtttagtttttga-aagacaaaacttcaaaaaa
i caePb3.Scfld02_0     C 0 I 60
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  827946 122 -  4500979 I

a score=0.000000
s ce10.chrX            3721131 60 + 17718866 ATACACCTAATGCAAGTTATTTTGAAAATGAAGCCATAACATTTCTATTGTGAATTTAGT
e caePb3.Scfld02_0     2100594 60 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  827946 122 -  4500979 I

a score=233.000000
s ce10.chrX            3721191 12 + 17718866 CAGAATTATTTT
s caeRem4.Crem_Contig0  828068 12 -  4500979 CCAGCTTATTTA
i caeRem4.Crem_Contig0 I 122 C 0
e caePb3.Scfld02_0     2100594 60 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I

a score=-6367.000000
s ce10.chrX            3721203 194 + 17718866 AAATTACAATATCGATAACTTCAAAGGTGGAGCAGCGCAGTGGGGAaatatataaaatataagtgtga-cagttttttttttcaaaaaatggcaaaagctacgttttggccactttttgactgtcaataaaaatattccgaaatttttaaatagcttcat-tttataataatatttggtcattttgacattatagg
s caeRem4.Crem_Contig0  828080 117 -  4500979 AGAATACAATCCCGTTTGC--CAAAGACCAAA--------------------TACAATAAATGTGCTATCAAGCTTTATTTTCAATA-----------------------------------------CAAATTAgttgaaaa----cacaaaatattgtatgtggaaaaat---------t---gtgattatAGG
i caeRem4.Crem_Contig0 C 0 I 32
s caePb3.Scfld02_0     2100654 132 +  4147112 -aaattaatttttgtatCC-TCAGAAATCAAG--------------------TACAAAAATGTTGTGAATAAGCTATtgttttgatatat-------------tttt-----cttttct--------tcaaacttttttggag----cACACCTTGTGAT-TATACAACAAT---------TTCCGACATTGTA--
i caePb3.Scfld02_0     I 60 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I

a score=244.000000
s ce10.chrX            3721397 21 + 17718866 agtggtttttTTTGCTATTCC
s caePb3.Scfld02_0     2100786  7 +  4147112 --------------CTATTCC
i caePb3.Scfld02_0     C 0 I 43
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  828197 32 -  4500979 I

a score=0.000000
s ce10.chrX            3721418 13 + 17718866 GTTTCCAATTCTT
e caePb3.Scfld02_0     2100793 43 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I
e caeRem4.Crem_Contig0  828197 32 -  4500979 I

a score=169.000000
s ce10.chrX            3721431 86 + 17718866 ATTCTCTTGTACTATTCGAAAACTCATCCTGTATTGTTTTTAAACTTTACGTTCAAGTTCTCATCAGACTTGTAAATGTTCCTGAA
s caeRem4.Crem_Contig0  828229 62 -  4500979 AATGTTTGGtgacattcaaaaa---------------gtttaacaTTTGCctaaaagatttcaaaaaacttcaaaat---------
i caeRem4.Crem_Contig0 I 32 C 0
e caePb3.Scfld02_0     2100793 43 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I

a score=-4790.000000
s ce10.chrX            3721517 140 + 17718866 AAACAAAGAGCAGCTGAAAATAATTTGAGAAAAAAATTGTACTG--CATTATTCCAGCGTTCGCTCGAACCCCGTC--TTGATTGTTTTTGATTTTTCGAATAGCATACAAGCAAAATAATAAGTTAAAGACTCTGCGCA---AAAA
s caeRem4.Crem_Contig0  828291  75 -  4500979 -----------------------tcttaGATATCAATTACTATT--ACTTATTTTTGT--TCTCAAGA----AGTC--TTGTTTGGT-----------AAATAG------AACAAAATG---------------TACACc-------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2100836 106 +  4147112 aacgAAGGAAACGCTTTCAATAATTTAAGAAGTCCGATATTTCCCAAGCCATTCATATA-TTCCTAGA----CGTCTTTTGTTTGGT-----------AAATAG------AGACAAATA---------------TACACCTGc----
i caePb3.Scfld02_0     I 43 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I
e caeSp111.Scaffold630 5823829 989 + 20921866 I

a score=24823.000000
s ce10.chrX            3721657 272 + 17718866 AGAAAACAACAAAAGTTGAG------TGCTTAAAATAGAGTACTTGTATTTAAACGAGTTTGCATTCGATTTC-ATTTCCTTTTTGTTTTGTTTGAATTCAATTTATGTTTTTCTATTCCCTCCAAATGAGAATGATT-----GTTCAA---TAAACTTTGTCCCCCTATCA---AATCCGGTCTACCACTGAATAGATTAGAGGTCTACCCAACAAGCTCGAAGTTCTGG---CCTTATTGTTCTCT-TAG---CGTTGAGCGGTCATCAGACATACGAATT----------------GTGAGTAACCGGGA
s caeRem4.Crem_Contig0  828366 271 -  4500979 tgcaaaaaacaaagattgaACAGCACTGCTGAAAATAG--------TATTGAAAGGA------ATGCGATTTC-ATTTCCGATt-------ctcaaattccaatt-ttcttttctattatCTAAACCCAAAAATAACTTGTCTActctcttttttggtttggtCTGTTAACA---AAGTTTACCTTTTTCCGATTAGA------CTCTTTTTTAAGATCCCAAAGATCTGA---ACTTCTTGTTCCCTACAA---AAGGAAACGATCACTAGACA---GATCC-TTGTTTAAGGAGAATATGAGTAACAATGG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5824818 255 + 20921866 ---agaaaacaagaattgaACAGCACC---CAAAATAG--------TATTGAAATGA------AACCGATTCCAATTTCCGATT-----CCCCCAATTCCCAATT-TTCTCTGCCATCATCTTT--Ccgaaaataacttt---tttccc---ttAGTTTTCGTCGGTTAACAAAGTCATCCAAGT-------AATTTA------GACTCTTCAAAGAGCTCGAAGATCTTA---ACTATTTGTTCtctacaaaa-aatgaatcgcTCACCAGACA---GAACTCTTTCTTAAGGAATATATGAGTAA----GA
i caeSp111.Scaffold630 I 989 I 3
s caePb3.Scfld02_0     2100942 275 +  4147112 --aagagaacaaaaattgaacaaaaccGCTGAAAATAG--TATGTTTATCGAATTGA------GTTTGGATTC-ATTTCcgatt-------ctcaaatttcaatt-ttctttcccATTATCTCG--ACGGAAATAACTTTCCGCCTCCC---CCAACATTCCT-GGTTAACA---TCATTtacgttttttcgaaatta------gtcTGTTAAAAGAGTTCGAAGATCCGAAGTACTTTTTGTTCCCTACAAAATAATGGAGCGGTCACCAGACA---GGACT-TTGTTTAAGGAATATATGAGTAACAAGGA
i caePb3.Scfld02_0     C 0 I 3
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8872576 4121 + 21540570 I

a score=94015.000000
s ce10.chrX            3721929 445 + 17718866  
s cb4.chrX             8876697 417 + 21540570  
i cb4.chrX             I 4121 I 2
s caeRem4.Crem_Contig0  828637 448 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 33
s caeSp111.Scaffold630 5825076 484 + 20921866  
i caeSp111.Scaffold630 I 3 C 0
s caePb3.Scfld02_0     2101220 451 +  4147112  
i caePb3.Scfld02_0     I 3 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=154.000000
s ce10.chrX            3722374 8 + 17718866 TGCGAAAA-
s cb4.chrX             8877116 8 + 21540570 -gacaaaaa
i cb4.chrX             I 2 I 4
s caePb3.Scfld02_0     2101671 8 +  4147112 Cgagaaaa-
i caePb3.Scfld02_0     C 0 I 4
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5825560 0 + 20921866 C
e caeRem4.Crem_Contig0  829085 33 -  4500979 I

a score=460.000000
s ce10.chrX            3722382 6 + 17718866 CGAGCC
s caeSp111.Scaffold630 5825560 6 + 20921866 tgagcc
i caeSp111.Scaffold630 C 0 I 14
e caePb3.Scfld02_0     2101679 4 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877124 4 + 21540570 I
e caeRem4.Crem_Contig0  829085 33 -  4500979 I

a score=0.000000
s ce10.chrX            3722388 1590 + 17718866  
e caePb3.Scfld02_0     2101679    4 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877124    4 + 21540570 I
e caeSp111.Scaffold630 5825566   14 + 20921866 I
e caeRem4.Crem_Contig0  829085   33 -  4500979 I

a score=60.000000
s ce10.chrX            3723978 2 + 17718866 ag
s caePb3.Scfld02_0     2101683 2 +  4147112 aa
i caePb3.Scfld02_0     I 4 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877124 4 + 21540570 I
e caeSp111.Scaffold630 5825566 14 + 20921866 I
e caeRem4.Crem_Contig0  829085 33 -  4500979 I

a score=149.000000
s ce10.chrX            3723980 11 + 17718866 -aAAAGTCAAGT
s caeSp111.Scaffold630 5825580 11 + 20921866 -AAGAGAGAAAG
i caeSp111.Scaffold630 I 14 C 0
s caePb3.Scfld02_0     2101685 11 +  4147112 aaagggagaaa-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877124  4 + 21540570 I
e caeRem4.Crem_Contig0  829085 33 -  4500979 I

a score=3984.000000
s ce10.chrX            3723991 12 + 17718866 GGGACTTCCCAA
s caeRem4.Crem_Contig0  829118 12 -  4500979 GGAGCTTCCAAA
i caeRem4.Crem_Contig0 I 33 C 0
s caeSp111.Scaffold630 5825591 12 + 20921866 GGAGTTTCCAGA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2101696 12 +  4147112 agagCTTCCAAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877124  4 + 21540570 I

a score=13289.000000
s ce10.chrX            3724003 109 + 17718866 GGTCCATCATTCTAATTCGA-----CTGGTCA-------------TCAGCGA---------CTCACCTCCAAAAGTG-TTTTTTTTCTCTAATCGTGTTCTCCT----GCAGCCAACTTGTTTTTTAAAGCTTGGACTTTT
s cb4.chrX             8877128 107 + 21540570 ggTCCATCATTCTAATTCAG-----CCGGTCATTTTCTACCCCATCCAGACG-GAAAACACCTCgtcatctcat----tttttttgctctaatCGGGTTCT-------GCAGCCGGTGGTA--------------AAT---
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0  829130 104 -  4500979 GGTCCATCTGTCTAATTCAG-----ATGGTCA-------------CCCAATG-AAAAACA-CTCGTCATCTCATGAACTGGTTTTCCGTTAATCATGTTTT-------GCAGGCGACAATCTTAT-------TATATT---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5825603 120 + 20921866 AGTTCATCATTCTAATTCAG-----CTTGTCa-------------cctgaagaaaaaaca-ttcgtCACCTC-CGTGCGGGTTCTCCGCTAATTGTGTTCCCTGCAC-ATAAgtaaatttttcattgagcTATGTACTTTT
i caeSp111.Scaffold630 C 0 I 140
s caePb3.Scfld02_0     2101708 126 +  4147112 AGTCCATCATTCTAATTTGGCGGGCCGGGTCA-------------CTAGAAGTGAAAACA-TTCGTCACCGC-TGTGCAGGTTCTCCGCTAATCGTGTTCTCAGTTCGATAAGTAACTTTATTGCTGAGTTATGTACTTTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=768.000000
s ce10.chrX            3724112 9 + 17718866 TGGCAATTG
s cb4.chrX             8877235 9 + 21540570 TGATAACTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  829234 9 -  4500979 TTCTAACTA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2101834 9 +  4147112 TCGTACTTG
i caePb3.Scfld02_0     C 0 I 206
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I

a score=1282.000000
s ce10.chrX            3724121 22 + 17718866 TGCCACTATTTGAAAATTTGTG
s cb4.chrX             8877244 22 + 21540570 Tgttaatatttaaaaaatcatg
i cb4.chrX             C 0 I 126
s caeRem4.Crem_Contig0  829243 21 -  4500979 TG-CACTTTTTCATagtttgag
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2101843 206 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I

a score=242.000000
s ce10.chrX            3724143 4 + 17718866 ATTT
s caeRem4.Crem_Contig0  829264 4 -  4500979 gttt
i caeRem4.Crem_Contig0 C 0 I 178
e caePb3.Scfld02_0     2101843 206 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877266 126 + 21540570 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I

a score=0.000000
s ce10.chrX            3724147 601 + 17718866  
e caePb3.Scfld02_0     2101843 206 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877266 126 + 21540570 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I
e caeRem4.Crem_Contig0  829268 178 -  4500979 I

a score=616.000000
s ce10.chrX            3724748 164 + 17718866 TTTCCAAAATTTTAAGTGGAACATAATTCACTTGAAAAATAGCTCTACTCAACAATTTATATAGAAATAAAATAGCTAGTACACTACTTTGTTCTAGCAAATTGTTCCATTAAACTTTCTACTTTCAAAATTCAAACTT---CCAAAGTTTGAA-----------------------------GCGATGTGTTGCT------
s caePb3.Scfld02_0     2102049 178 +  4147112 ttttgaagattttgaa---aatttagttaGCTTGAAAATTGACT----GCGAgattttttaccaaaaaaca-----taccaaattaattt-----------tcatttcattggattttcaagatt-aaaattcaaacttatacaaaattctgaaaaaaatttttgattgaacttTTCTCCAATGCTATGTCATGCTCATTTG
i caePb3.Scfld02_0     I 206 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877266 126 + 21540570 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I
e caeRem4.Crem_Contig0  829268 178 -  4500979 I

a score=418.000000
s ce10.chrX            3724912 3 + 17718866 ATT
s caeRem4.Crem_Contig0  829446 3 -  4500979 ATG
i caeRem4.Crem_Contig0 I 178 C 0
s caePb3.Scfld02_0     2102227 3 +  4147112 ATG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877266 126 + 21540570 I
e caeSp111.Scaffold630 5825723 140 + 20921866 I

a score=4894.000000
s ce10.chrX            3724915 35 + 17718866 TTTCCCACGTTTCTTATATCACCACCCCC----TTCCTT----
s caeRem4.Crem_Contig0  829449 39 -  4500979 TTTCCCACGATTCAAATATCATTGAGCAG----ATCCCCGTCt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5825863 35 + 20921866 TTTCCCACGAGCCGGATATCACTGAACAA----Attgct----
i caeSp111.Scaffold630 I 140 C 0
s caePb3.Scfld02_0     2102230 39 +  4147112 TTTCCCACGATTTGAGTATCATTGAGCAGTAGCTCTgct----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e cb4.chrX             8877266 126 + 21540570 I

a score=115188.000000
s ce10.chrX            3724950 439 + 17718866  
s cb4.chrX             8877392 519 + 21540570  
i cb4.chrX             I 126 I 2
s caeRem4.Crem_Contig0  829488 498 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold630 5825898 511 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2102269 510 +  4147112  
i caePb3.Scfld02_0     C 0 I 43
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-2186.000000
s ce10.chrX            3725389  7 + 17718866 GAATTTA------
s cb4.chrX             8877913  7 + 21540570 --GATTt----tc
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0  829992 11 -  4500979 --GATTCCAGATC
i caeRem4.Crem_Contig0 I 6 C 0
s caeSp111.Scaffold630 5826409  7 + 20921866 AGAATTG------
i caeSp111.Scaffold630 C 0 I 22
e caePb3.Scfld02_0     2102779 43 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-906.000000
s ce10.chrX            3725396 32 + 17718866 TTACAATTATCT-GATCTAGTGGCACAAACTCC
s cb4.chrX             8877920 24 + 21540570 tttagaaaattctaaacaatTAGC---------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  830003 22 -  4500979 TTTTGGATATTT--AACAATTAGC---------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2102779 43 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5826416 22 + 20921866 I

a score=-1.000000
s ce10.chrX            3725428 4 + 17718866 GGGA
s cb4.chrX             8877944 1 + 21540570 ---A
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  830025 1 -  4500979 ---A
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2102822 4 +  4147112 AACA
i caePb3.Scfld02_0     I 43 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5826416 22 + 20921866 I

a score=47585.000000
s ce10.chrX            3725432 1564 + 17718866  
s cb4.chrX             8877945 1214 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  830026 1316 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5826438 1309 + 20921866  
i caeSp111.Scaffold630 I 22 C 0
s caePb3.Scfld02_0     2102826 1335 +  4147112  
i caePb3.Scfld02_0     C 0 I 81
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-1437.000000
s ce10.chrX            3726996 21 + 17718866 ------------------TTCTAGCTCCATTTTTTGTGG
s cb4.chrX             8879159 17 + 21540570 ---------------tttttctg-------tcctcATGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  831342 27 -  4500979 --GG---CTAGcacacatttttg-------tttttatga
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5827747 32 + 20921866 CGGGCCCCTCATACAcatctttg-------tttttgtga
i caeSp111.Scaffold630 C 0 I 48
e caePb3.Scfld02_0     2104161 81 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=-3695.000000
s ce10.chrX            3727017 39 + 17718866 C-------------------CTGTGTGGCAGAATTG---TGCGTACCCAGAGC----ATTTTGGA
s cb4.chrX             8879176 42 + 21540570 C---------------------TTGTTTCAGCTCATCTCCCAGTACCTAGAAAAACTAATTC--A
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  831369 54 -  4500979 caTCCAGATGGCACTAGCAActtagtttcaaaacat---ccaaTACCAGGA------ATTTT--T
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2104161 81 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I
e caeSp111.Scaffold630 5827779 48 + 20921866 I

a score=180.000000
s ce10.chrX            3727056 1 + 17718866 T
s cb4.chrX             8879218 1 + 21540570 T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  831423 1 -  4500979 C
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5827827 1 + 20921866 T
i caeSp111.Scaffold630 I 48 C 0
e caePb3.Scfld02_0     2104161 81 +  4147112 I
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=32161.000000
s ce10.chrX            3727057 417 + 17718866  
s cb4.chrX             8879219 538 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  831424 556 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5827828 513 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2104242 528 +  4147112  
i caePb3.Scfld02_0     I 81 C 0
e caeJap4.Scaffold1521  122326 4816 -   152914 I

a score=328713.000000
s ce10.chrX            3727474 692 + 17718866  
s cb4.chrX             8879757 667 + 21540570  
i cb4.chrX             C 0 I 27
s caeRem4.Crem_Contig0  831980 667 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5828341 655 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2104770 667 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  127142 609 -   152914  
i caeJap4.Scaffold1521 I 4816 C 0

a score=-2862.000000
s ce10.chrX            3728166 28 + 17718866 CGCAGAATCCGATCATCAACATTCCCCT
s caeRem4.Crem_Contig0  832647 15 -  4500979 -------------AGTTCAAATGTGACA
i caeRem4.Crem_Contig0 C 0 I 12
s caeSp111.Scaffold630 5828996 15 + 20921866 -------------AGTTTATATTTCGAT
i caeSp111.Scaffold630 C 0 I 12
s caePb3.Scfld02_0     2105437 15 +  4147112 -------------AGTTGAAATCTCACT
i caePb3.Scfld02_0     C 0 I 24
s caeJap4.Scaffold1521  127751 25 -   152914 ---AGTACCAACAGGataatattgcaaa
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8880424 27 + 21540570 I

a score=50422.000000
s ce10.chrX            3728194 81 + 17718866 -------AATATTCCATTTTTT---TTTCAGACAGTCGGGTACAAC---TTGGACGCTCGGAACTACTTTGTCGGATTGGGACGTCGTTAAACT
s cb4.chrX             8880451 83 + 21540570 -----------tttaattttcatattttaagaCTGTCGGGTATAACGGTGTGGACGCTCGGAACTACTTCGTCGGCCTTGGACGTCGTTAAACA
i cb4.chrX             I 27 C 0
s caeRem4.Crem_Contig0  832674 84 -  4500979 -------TGTTTTTAACTTTGTAAATTACAGACTGTCGGGTACAAC---TTGGATGCGCGGAACTATTTTGTCGGGCTGGGACGTCGTTGAGCA
i caeRem4.Crem_Contig0 I 12 C 0
s caeSp111.Scaffold630 5829023 73 + 20921866 -------AAATATCTGTTC----AGTTTCAGACAGTCGGATACAAC---CTGGACGCACGGAACTACTTCGTCGGGCTCGGACGC-------TA
i caeSp111.Scaffold630 I 12 C 0
s caePb3.Scfld02_0     2105476 77 +  4147112 -------taataatcatt-------tttcagacggTCGGGTACAAC---TTGGACGCACGGAACTACTTCGTTGGGTTGGGACGTCGATAAGCA
i caePb3.Scfld02_0     I 24 C 0
s caeJap4.Scaffold1521  127776 90 -   152914 aaaatggtgTCATGAATTTTCT-AATTTCAGACCGTCGGATACAAC---TTGGACGCTCGGAACTATTTCGTCGGACTTGGTCGCCGTTGAACT
i caeJap4.Scaffold1521 C 0 I 602

a score=920.000000
s ce10.chrX            3728275 13 + 17718866 CCAGCGAACATCA
s cb4.chrX             8880534 11 + 21540570 AGA--GAACATCA
i cb4.chrX             C 0 I 354
s caeRem4.Crem_Contig0  832758 10 -  4500979 TCA---ATCAGCA
i caeRem4.Crem_Contig0 C 0 I 8
s caeSp111.Scaffold630 5829096  7 + 20921866 ------AGCATCA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2105553  7 +  4147112 ------AGCGTCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  127866 602 -   152914 I

a score=14789.000000
s ce10.chrX            3728288 133 + 17718866 ---------------AGCTACTTTCATCCCAATTGCTTCT-------TCTTAGTCCCAAATATG-ATAACACTCTT-------------------------TCCATAAAA-T--CGTTTTTGTGCAATAAATTGAT-TGTATGGGAAATACATCGAAGATC-TTTTAGCTAATAAAATGTTACAAA----
s caeRem4.Crem_Contig0  832776 167 -  4500979 ---------------GAATACCTCTT-Ctcatttgctttt-tttcgcTCTAGTC-CCAAATCCTTATGACACTCTTTATATTGACTGTGAATTCCATTCCACCCATCCCA-TCACGTTTCTCTTGAATAAAACCTTGTGTATGAGAAATAAC---ATGATC-TTTTAGCTAATAAAGTGTTGTGAACAAA
i caeRem4.Crem_Contig0 I 8 C 0
s caeSp111.Scaffold630 5829103 168 + 20921866 ATCAACTCCAATTCAGAATACCTCTT---CGTATGCTTCTCCATTGCTCtcatctccttctctctaTGATACTCTTCAATCTCA------ATTCcat----ctcatttcattcacGTTTCTCCGCAATAAATCCAT-TGTAT-GGAAATGTC---AAGATCTTTTTAGTCAATAAAGTTTTgtgaa----
i caeSp111.Scaffold630 C 0 I 180
s caePb3.Scfld02_0     2105560 160 +  4147112 ATCAGCATTTATTCAGGATACCTCTc-----tttgcttct-------tctcttctctagCCCCGAATACCACTCTTTACTCTGAAT----ATTCTGT----TCTATTCCA-TCACGTTTCTTCGCAATAAATCCAT-TGTATGGGAGATGCC---AAGATC-ACTTAGTTAATAAAGATTTGTGAA----
i caePb3.Scfld02_0     C 0 I 175
e caeJap4.Scaffold1521  127866 602 -   152914 I
e cb4.chrX             8880545 354 + 21540570 I

a score=259.000000
s ce10.chrX            3728421 5 + 17718866 AATTG
s caeRem4.Crem_Contig0  832943 5 -  4500979 AAGTG
i caeRem4.Crem_Contig0 C 0 I 141
e caePb3.Scfld02_0     2105720 175 +  4147112 I
e caeJap4.Scaffold1521  127866 602 -   152914 I
e cb4.chrX             8880545 354 + 21540570 I
e caeSp111.Scaffold630 5829271 180 + 20921866 I

a score=0.000000
s ce10.chrX            3728426 568 + 17718866  
e caePb3.Scfld02_0     2105720 175 +  4147112 I
e caeJap4.Scaffold1521  127866 602 -   152914 I
e cb4.chrX             8880545 354 + 21540570 I
e caeSp111.Scaffold630 5829271 180 + 20921866 I
e caeRem4.Crem_Contig0  832948 141 -  4500979 I

a score=221.000000
s ce10.chrX            3728994 19 + 17718866 ATATCCACAGCAAAAAAG--C
s caeRem4.Crem_Contig0  833089 21 -  4500979 ATATCCGGTGCTTGAAAGGTC
i caeRem4.Crem_Contig0 I 141 C 0
e caePb3.Scfld02_0     2105720 175 +  4147112 I
e caeJap4.Scaffold1521  127866 602 -   152914 I
e cb4.chrX             8880545 354 + 21540570 I
e caeSp111.Scaffold630 5829271 180 + 20921866 I

a score=-155.000000
s ce10.chrX            3729013 1 + 17718866 A
s cb4.chrX             8880899 1 + 21540570 A
i cb4.chrX             I 354 C 0
s caeRem4.Crem_Contig0  833110 1 -  4500979 T
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2105720 175 +  4147112 I
e caeJap4.Scaffold1521  127866 602 -   152914 I
e caeSp111.Scaffold630 5829271 180 + 20921866 I

a score=1272.000000
s ce10.chrX            3729014 3 + 17718866 TCT
s cb4.chrX             8880900 3 + 21540570 TTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  833111 3 -  4500979 TTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5829451 3 + 20921866 TTT
i caeSp111.Scaffold630 I 180 C 0
e caePb3.Scfld02_0     2105720 175 +  4147112 I
e caeJap4.Scaffold1521  127866 602 -   152914 I

a score=49310.000000
s ce10.chrX            3729017 196 + 17718866 TCCTAACAGGATTAGT-----------TATCAGCTGATATGCCGA---------CGTGCACTTTGA---CAAAAAGTCA---------AGAAGTGACGAT-----------AGTGATAAAACACAAATGTAGGTCAATATGGTCACGACTGGAATGT---GAAACATTATAGGGACAGAGTGTGTTAAGTTATGAAATTTTCCGTTTCC-TCCGAATTTGATAACTGCGTT--TATGTC----------GATCAA
s cb4.chrX             8880903 198 + 21540570 GTTTAACAGGATTAGC-----------AATCAGATGATATTCTTG---------CGTGCACTTTGAGAAAGAAAAGTCAGTGGAA---AAAAGTGACGAG------GTGTATGTTACAAAACA------TAGGTCAACTCGGTCACATATTTGATGTCAAAAAGCA----AAGGAAA---------CAGTTCTAGAGTTTTCCGGACAC-----Acactgataatttt-ttaatgtgTTTCGACTGTAAAA---A
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  833114 214 -  4500979 TCTTAACAGGATTAGcaataatcagaaaatcagCTGATCTTCTAGTGGGCACAACGTGCACTTT-----AACAAAgtca-tgaaat-gaaaaatgacgag--TGAAGAGTATGTTACAAAACACACATGCAGGTCAATTCGATCACAGATAGAGtgt---aaaatt----gaagaaa---------caatTCTAGAGTTTTCCGTATTCTGTCGAAATTGATAACTGC-TC--TGTGTC----------AA---T
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5829454 208 + 20921866 TCTTAACAGGATTAGCAATCGCCAG--CATCAGCTGATCTTCTAGCGGACAA--CGTGCactttaaga-aaaaaagtca-tGATATCTAGAAGTGACGAG-----------TGTTACAAAACACACATGCAGGTCAACACGGTCACACATGGAATAA---AATATC-----AAGACC---------ATATTCTagagttttccgttttcagatGGCACTGATAACTGT-TT--TATGTC----------GGTCTT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2105895 194 +  4147112 TCTTAACAAGATTAGCAAT--------CATCAGCTGATCTTCTAGCGGGCAA--CGTGCACTTTAAGA-GAAAA--TCA--------TAGAAGTGACGAGTTATAGTAGTATGTTACAAAACACACATGCAGGTCAACACGGTCACACATGGAGTAT---TG------------------------AAATTCGAGAGTTTTCCGTTTCCAATTGGCACTGATAACTGT-TT--TATGTC----------GATCTT
i caePb3.Scfld02_0     I 175 C 0
e caeJap4.Scaffold1521  127866 602 -   152914 I

a score=60362.000000
s ce10.chrX            3729213 200 + 17718866 CTCTGCGTCACT------------------------TTAGGGGGAGGACACAATTGAAATTCATTAA--TGGAAT-----TTTTGATAAGAAACA-TGAGAGCC----AAGTG-TGATAACAC-------CGTTTTCTTTTTTATTATCGATTTTGACACTGATTCCGTATTCTGAGAGTTTCATCAAAAATCAAAAAA-------------------------TTGCAA-AAATGGCTAGAAAAACCATTGATTCGTAAGTTCTCTAAA---
s cb4.chrX             8881101 240 + 21540570 CTGCGCGTCAccgagaaaaaggaaaaataaagaaagagaggaaaagagaggaggaggaaTTCATTAAATTGGAATTCA-GTTACGATAAGAGAT--TGTGGAGAGAGCATCTg-tgataacat-----------------ttttttattgatta------cATTTCCGC-TATTCAGCGTTTCATCACTACTCTGAGAAAGCAAACCTTTTTTAtttgaactattttcaa--aatggtcaGAAAAACTTTAGACTCGTAAGTTTACCACT---
i cb4.chrX             C 0 I 3
s caeRem4.Crem_Contig0  833328 214 -  4500979 CTCTGCGTCACT-------------------TGAAGAGAGCAGGAGGACACAATCGGAATTCATTAA--TGGAGTTCA-TTTCCGATAAGAGTC--AGAAAAAA------CTG-TGATAACATCGACcgtcattttca--tcttttattgattt------tgtttcCGTATTCTCAGTGTTTCatcacttttccaaaaa----------------ctgagGAATTTTGAG-CAATGGCAAGAAAAACTATAGAATCGTGAGTTTTCTGAT---
i caeRem4.Crem_Contig0 C 0 I 3
s caeSp111.Scaffold630 5829662 217 + 20921866 CTCTGCGTCACT------------------------CAAAGGGGAGGACACAATTGGAATTCATTAA--TGGAATTCA-TTTCCGATAAGACTAACAGAGACCA----ACTCGCCGATAACACAGACTGTCAccattatcatttttattgattt------tgattCCGTGTTTTCAGTGTTTCATCACTTCCCTGAGAA------------CCGTCAcagcaattttcaaaaaatggcgaGAAAAACTTTAGATGCGTAAGTT----ATT---
i caeSp111.Scaffold630 C 0 I 13
s caePb3.Scfld02_0     2106089 201 +  4147112 CTCTGCGTCACT--------------------------GCGGAGAGGACACAATTGGAATTCATTAG--TGGAATTCA-TTTCCGATAAGACTG--AGAGAGCA----ACCCG-CGATAACATAGAccgtcatt-tcattttttttttctctat------cgaTTCCGTATTCCGAGTGTTTCATCACAgttctgaaat------------ctttt-------tttttgaaaaatggctaGAAAAACTCTAGAATCgtaagtt----------
i caePb3.Scfld02_0     C 0 I 35
s caeJap4.Scaffold1521  128468 186 -   152914 CTCTGCGTCATT-----------------------GGAGAAAGAAGAGCACAACTGGAATTCGCTAA--TGGAATTCAGGTTGTGATAAGG-----TGTCAGTA----AGGAC-TGATAACAC-------ACTTCTattcttttttattgattt------------------ccgAGTGTTTCAT--------------------------TTAGCAGATTGACCTTCAA-AAATGGCAAGAAAAACTATTGAATCGTAAGTATTcatctcat
i caeJap4.Scaffold1521 I 602 C 0

a score=-3988.000000
s ce10.chrX            3729413 28 + 17718866 CTAATAAATAAATCATTACTC---CAACTTT
s cb4.chrX             8881344 28 + 21540570 ctacttttcaaaacaatATTC---AAAGTTC
i cb4.chrX             I 3 I 5
s caeRem4.Crem_Contig0  833545 23 -  4500979 TCGTT-----GAGTAACGTTC---CAATTCT
i caeRem4.Crem_Contig0 I 3 I 5
s caeSp111.Scaffold630 5829892 15 + 20921866 TTACT-----AAACACCATT-----------
i caeSp111.Scaffold630 I 13 C 0
s caeJap4.Scaffold1521  128654 26 -   152914 ttttt-----aaatatctttttcataaattt
i caeJap4.Scaffold1521 C 0 I 3
e caePb3.Scfld02_0     2106290 35 +  4147112 I

a score=91322.000000
s ce10.chrX            3729441 228 + 17718866 TTGCAGAATTCCAGAGCCAATTGCTCTTCCAACAGAAGAAACAGTTCAAAAGCGCATTAAACTGAAAATGGTGGATTTGGATGCAGAAATAGCGAAATTGAACGTACAAGTGCG----TAATGTAATAAAACAAAAATCACATCAT-----------GCTCTTTCCGCTTCTGAATA-------CATAATTGAGATGTCAAAAATGCCAGCTTGGAAATTGTTTCTTT-TT----TAGTAAAATCATTGACGTTT
s cb4.chrX             8881377 227 + 21540570 TCCC---------GAACCAGTTGTTCTCCCCACCGAGCAAATCGTTCAAAAACGTATCAAACTCAAAATGGTTGATTTGGACGCTGAGATTGCCAAATTAAATATGCAAGTATGTTTTTATAGacataaaacaaaaatcacatcac------ttttcgttttttccg-------cTTGTCTTTGCATAATTAAGGTGTTGAAAATGACAGCATA-----TGTTATTAA-TAATGTGTGGATATGTAGTCTTATTT
i cb4.chrX             I 5 C 0
s caeRem4.Crem_Contig0  833573 237 -  4500979 TTCCAGAGTGCCGGCACCGGTTGTTTTACCAACTGAGGAGACAGTGCAAAAAaggataaaactgaaaatggtaGACTTAGATGCCGAGATTGCTAAATTGAATGTTCAAGTAAG------------TAGAACAAAAATCACATCACATCA-TATTTTGTTCTTTCCGCTATCGACTAGTCTTTGAATAATTGAGGCCTCGAAAATGGCAGCataacaattgttttttt-ta----ttaaatattCCATCTCAATC
i caeRem4.Crem_Contig0 I 5 C 0
s caeSp111.Scaffold630 5829907 233 + 20921866 TTGCAGAGTTCCCGAGCCAGTGACATTACCGTCAGAGCAGACCGTGCAAAAGAGAATCAAACTTAAAATGGTGGACTTAGACGCCGAAATTGCCAAACTTAATAAACAAGTACG------------TTAGACATAAACCACATcacatca--tttttgttctttccaCATTTCAGTAGTCTTTGCATAATTAAGGTCTCGAAAATGGCAACAAGACAATTGTTTTCgatta----ttaaaaattcatattt----
i caeSp111.Scaffold630 C 0 I 24
s caePb3.Scfld02_0     2106325 223 +  4147112 TTTAAGAGTTCCCGAACCGGTTGTATTACCGACAGAACAAACTGTTCAAAAGCGAatcaaactcaaaatggtGGACTTGGACGCTGAAATTGCCAAATTGAATGTACAAGTAAG------------CTAGACAGAAATCACATCAC--------TCTGTTCTTTCCGCTTCCGAGTAGTCTTTGCATAATTGAAGACTTGAAAATGGCAAGATGacaattgtttttga-ta----ttaaaaattcatc-------
i caePb3.Scfld02_0     I 35 C 0
s caeJap4.Scaffold1521  128683 170 -   152914 TTTTAGCGTACCGGAGCCAATTGTTCTCCCCTCCGAGCAAACCGTGCAGAAaagaataaaattaaaattggtGGATTTTGAAGCAGAGATTGCCAAACTGAATATGCAGGTAGG-----------AGGAAAAAGGGAACACTTTGCgggaaaactgtattttttcca--------------------------------------GACAAGACG-----TGTTT-------------------------------
i caeJap4.Scaffold1521 I 3 C 0

a score=-10757.000000
s ce10.chrX            3729669 28 + 17718866 TTAGATGAAAC--CATAAATAATT------GATTAG
s cb4.chrX             8881604 17 + 21540570 -----TGAG----CTCAGTCAGTTCC----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  833810 17 -  4500979 -----T--------TTAATTAATTTCATTG------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2106548  8 +  4147112 ----------------aaataatt------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  128853 30 -   152914 TTCCGTGAAATTGTTTATAAAATCTTTtac------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5830140 24 + 20921866 I

a score=-34577.000000
s ce10.chrX            3729697 104 + 17718866 GAAAGAAACAAATTTTGGAAACATTAGTTAAAAATAGGGGTGCGCGGACAttttcaagcaaaattag-----------tgataga-atctagggaa--tt-----ttctcatttatcaaaa-ag-
s cb4.chrX             8881621  52 + 21540570 -----------------------------------------GGA-----ATTTTAGGGTGT-----------------TTTTAGATAGTTGGGGAA--TT-----TTCTTG-GGAGCagga-ag-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  833827  86 -  4500979 ------------------AACGAG----------------AGGAAGAATATTTTTGGGAGCCATAAGTACTTCACTAATTTTACA-AGATGAGGAA--GTGACTATTTAAA-TAAGTAGAACGG-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5830164  50 + 20921866 -----------------GAACGAC-------------------agacatctttt------------------------ttctggg-------GGAACTAT-----TTCTCA-AGATCCGGA-AG-
i caeSp111.Scaffold630 I 24 C 0
s caePb3.Scfld02_0     2106556  82 +  4147112 ----------ttctgtcGGACAAttagtttcaaa------tgaaaacattttttcggaaaaaaaaaacta--------ttttaag-------gg----at-----ttttga-aaacaagga-aG-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  128883  69 -   152914 ----------------------------------------cagaaaaataattttgttttccaaccGGAT--------TTTGAGA-TTTTGATTAACGTT-----TTTTCA-ATAACAAGA-AAA
i caeJap4.Scaffold1521 C 0 I 146

a score=-54508.000000
s ce10.chrX            3729801 235 + 17718866 ttttttcatttcagctgagaaatgtagggaagccacaaaaactgtcggtaagctggaagttgccTCCGTTTTTTTGGCAATTTTTCTCTTTTATGAA---ATTTTTCAGTGCCAT-------CAAA-----TG-GGGTT--TTTTAAAAATATTTTCCTAAAAATTTTCTATGAA--GAATAGTTCTACTTAATGTCAAAAATGCATACTTTAGTGCATATTAAAATTCTTGTGAACACGTGGTTGTTTTGCCTT
s cb4.chrX             8881673 159 + 21540570 attt----------ttaaaaaatttg------------------------------agg------cAGATTTCATGATGATATGTTACCTAATTCGTGGCAACCACCATGAGTTTTGtggttttgaaatatta-atATTACCGatgaacagaattt-------------tttgaattaagtttgaaattttta------------taaatttccgATGTTCTAAGCTGATT------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  833913 160 -  4500979 ATTTCgaatg--aatttaaaaatttg---------------------ctATGAAAAACG------CAAGTGTCATAATAACAT-----------------AAGTACCAATGACATAGTGTTTCTCA-----TA-ATGCt--taacgaaaaaatttca-----------gtctgaa--aaatttgacggCTTAT------------ATAGTTTCTTTCATACGAAACTTATTCGGTTCAT----------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5830214 153 + 20921866 TTAC----------ATGAAAAACTTA-------------------------GCTGAACG------GATTGTGTTTGGA-------TTATCCAGTCAC---ATTTCTGAGTAacgtttttattgaaa-----tagaTGA---tggtaaaaacaaaata-tgattatatgatcagaa--gaatcaga------------------------ttagaggaaaatgaaattaacaATGTGCAC----------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2106638 145 +  4147112 TCAC----------G-AAAAAGATAA-------------------------ATTGAACG------GATTTGGCATGAAAATCTGTAAATGAGGTCGT---AAACCCTGGAATATTATTCATACAAA-----TAGAGGCT--TTATGAGAAACGTACA-TAATAATgttaaatcaa--aaatca--------------------------------------gaaagagacgctctgca-----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  128952 146 -   152914 I

a score=-14206.000000
s ce10.chrX            3730036 58 + 17718866 TGCTTGTTTTTATCTATATTTTTCAATCAACAAATTACGATGTTTCGTTAAAGACCAC
s cb4.chrX             8881832  5 + 21540570 -----------------------------------------------------ATTAT
i cb4.chrX             C 0 I 14
s caeRem4.Crem_Contig0  834073 15 -  4500979 -----------------ATTTTCCAG--------------------------GAGCAT
i caeRem4.Crem_Contig0 C 0 I 83
s caeSp111.Scaffold630 5830367 31 + 20921866 -----------------ACTGTTCAAC----------TGAAATCTAATAGGGGAACGT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2106783 15 +  4147112 -----------------atttttcaa--------------------------aaacag
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  129098 22 -   152914 tgttttttttcctcaatatTTT------------------------------------
i caeJap4.Scaffold1521 I 146 C 0

a score=-17256.000000
s ce10.chrX            3730094 59 + 17718866 TAGAAATCATAAGAGTAAAAACTACTGTACCCGTGAGGTTACTGT-------AACAACCCTGCAAT
s cb4.chrX             8881851 18 + 21540570 --------------------------------------TAGgtaa--tggaaaaaaat--------
i cb4.chrX             I 14 C 0
s caeSp111.Scaffold630 5830398 48 + 20921866 TTGGAAT--TGATACAAAAAACTCC--------GGAAGTCAGTCAGTatgataaaaat--------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2106798 32 +  4147112 tta----------aCCAATAACtac---------aaattcaacaa-------aaaaac--------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  129120 21 -   152914 -----------------GAAACTGT-----ACTGAGCCTCAAT-----------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  834088 83 -  4500979 I

a score=83496.000000
s ce10.chrX            3730153 116 + 17718866 GTTTTGAAA-TTTTCAGAGTCTTGACAGTAGTATACAGATGATCCGAGATATCGATCAAATGAATGTAGATGCAGTCCAGACAACTGCTGCTCTTGAAGATCAAGACGGTTAGTTTG------------------------
s cb4.chrX             8881869 107 + 21540570 ----------ttttcagagtctgGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCA------------------------
i cb4.chrX             C 0 I 79
s caeRem4.Crem_Contig0  834171 113 -  4500979 gttttc----atttcagtcACTAGAGAGCAGTATACAAATGATCAAAGATTTGGACCAGATGAATGTAGATGCTGTGCAAACCACTGCAGCTCTCGAAGATCAAGATGGTAAGTTCA------------------------
i caeRem4.Crem_Contig0 I 83 I 30
s caeSp111.Scaffold630 5830446 110 + 20921866 ---tta----ttttcagtccTTGGAAAGCAGTATACAAATGATCCGAAACCTGGATCAAATGAATGTAGAAGCAGTTCAAACAACAGCAGCACTTGAAGACCAAGACGGTGGGTTCA------------------------
i caeSp111.Scaffold630 C 0 I 19
s caePb3.Scfld02_0     2106830 114 +  4147112 ---ttaaaagttttcagtcaCTCGAAAGCAGTATACAAATGATAAAGAATTTGGACCAAATGAATGTAGAAGCAGTCCAAACAACAGCAGCACTTGAAGACCAAGACGGtaagttca------------------------
i caePb3.Scfld02_0     C 0 I 18
s caeJap4.Scaffold1521  129141 131 -   152914 ----------TTTTCAGTCCTTGGAAAGTAGTTTGCAAATGATTCAAGATTTGGAGCAGATGAATATCGATGGAGTTCAAACTGTGGCTGCACTTGAAGATCAAGACGGTACGTACATGACAAAcacaaaacaatattttt
i caeJap4.Scaffold1521 C 0 C 0

a score=-5165.000000
s ce10.chrX            3730269 36 + 17718866 TAGGATGTTTCCAACAGCTACCTAACTC--------------------------AG-ATGCTT
s caeRem4.Crem_Contig0  834314 26 -  4500979 ----------TATTGTGTTTCTTATCAT--------------------------CA-AAACTA
i caeRem4.Crem_Contig0 I 30 I 38
s caeSp111.Scaffold630 5830575 37 + 20921866 TTCAACGTTTCTCCGATTTCCTTATCTC--------------------------TATTTCCTT
i caeSp111.Scaffold630 I 19 I 31
s caePb3.Scfld02_0     2106962 36 +  4147112 CTCTATTCTTTCCCGAGTTCCTTATCTC--------------------------TA-TTCCTA
i caePb3.Scfld02_0     I 18 I 30
s caeJap4.Scaffold1521  129272 59 -   152914 ---tatgtcttgtgttttttattatctaacatctgtttcaatttgatttttatgta-ttgctt
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8881976 79 + 21540570 I

a score=256970.000000
s ce10.chrX            3730305 417 + 17718866 --------------------------------------------TTTTAGAACAGCTTGACAAAATCGAGGCGAATCTCAGCAATGTCATCGATGATCTGAATGTTGTTTCACATAACATAACAGCAATGGAGCATTATTGCGGATGCGGCTTCTTTCGAATTCTCCGGTTGGTGACTTTCGAATAAATCGACACA------------AACACGGTAATAAAA--ATTGT---TTTCAGCGCGCCATTCAAGTATTTTCGAAAACGAGAGCGTGACATCATAAAGGAAGAAGTATTAGAGTAAGCAT-----AAACACACGCGGCTCTT--ATAGAGTGCTCTCG------G------TTGCATGGGAACACATTTATTAAATTTTCAGAAAAATGACGAGCCCAAAATTGCGACGTAAAGAGGAAAGTAACATGATGATGTTCACGAATTCCAGCAAGCGAAGGGAGTCTACCGGGGATTTTATGAAACGGTAGGT
s cb4.chrX             8882055 402 + 21540570 --------------------------------------------tttcagaacaattgGACAAAATCGAAGAGAATCTCAGCAAAGTGATCGACGACCTGAATGTAGTCTCAACAAACATCACCGCCATGGAGCATTACTGTGGCTgtggaattttccgaattttttggttgGTCACT---GAtttttttG-----C--------GACAACACGATAATGAAA-TGTTGTTA-TTTCAGCGCTCcattcaaatattttcgaaaacgcGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGT--------------CAAACTTT--TTATTGT----CTC------AAGTGGCCTGCATAGAAACAGT-------GTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGT
i cb4.chrX             I 79 I 8
s caeRem4.Crem_Contig0  834378 398 -  4500979 --------------------------------------------TTCCAGAGCAGCTTGACAGAATCGAAGCGAACCTGAGCAAAGTGATCGATGACCTGAATGTAGTTTCCCATAACATCACCGCAATGGAACATTACTGTGGCTgtggaatttttcgaattctttggTTGGTCACT---GACTTTTTCGACACAA--------GTCAACACAATAATAAAA-GATTGT---TTTCAGTGCTccattcaaatattttcggaaACGAGAGCGTGACATcataaaagaagaagttttAGAGTAAG-----------------CAACCCTTAAGGAGTGT----TTC------G------TTGCATAGAAACaag-------ttatttcagaaaaatgacgaGTCCGAACTTGcgacgaaaagaagagagagacaCCGTCATGTTCAGAAGCTCTAATAAACGAAGAGAGTCAACGGGGGACTTTATGAAACGGTTGGT
i caeRem4.Crem_Contig0 I 38 I 84
s caeSp111.Scaffold630 5830643 391 + 20921866 --------------------------------------------tttcagagcaaCTTGACAACATCGAAGCAAATCTAAGCAAAGTAATTGATGATTTGAATGTGGTTTCACATAACATCACTGCAATGGAACATTACTGTGGCTGTGGCATTTTCCGAATTCTTTGGTTGGTCATT---GACTTTCAGGACACAA--------GACAACACGATAATAAAACCGTTGT---TTTCAGTGCtccattcaaatattttcggAAACGAGAGCGTGACAtcataaaagaagaagtctTGGAGTAAG-------------------TTTATT--T--CTGT----CTGAATTATG------TTGCttagaaaca---------aaattttagaaagatGACGAGTCCGAA------TAAAAGAGACGAAAGCAATACCGTGATATTCCGCAGTTCGAACAAAAGAAGGGAGTCTACTGGGGATTTTATGAAACGGTTAGT
i caeSp111.Scaffold630 I 31 C 0
s caePb3.Scfld02_0     2107028 393 +  4147112 --------------------------------------------tttcagaacagctCGACAACATCGAGGCGAATCTTAGCAAAGTAATTGATGATTTGAATGTTGTTTCACATAACATCACTGACATGGAGCATTACTGTGGCTGTGgcatttttagaattctttGGTTGGTCATT---GA--------ACTCGA--------GACAACAAGATAATAAAA-TACTGT---TTTCAGTGCTCCATTTAAATATTTTCGGAAACGAGAGCGTGACATcataaaagaagaagttctAGAGTAAG-------------------TGTTTT--CAAATGT----CCG------G------CTGCATAGAGACCAGAATCgttaaaattcagaaaaatgacgaGTCCGAAAAACCGTAGGAAGGAGGAAAGCAGCACAGTGATTTTCCGGAGTTCAAATAAGAGACGGGAATCGACGGGAGATTTCATGAAACGGTTAGT
i caePb3.Scfld02_0     I 30 C 0
s caeJap4.Scaffold1521  129331 441 -   152914 ttcttcttttgtcaacgtaaacaatttcaaattctatttttgaaattcagagCAACTTGACAAAATCGAAGCGAACCTCAGCAAAGTGAATGACGATTTAAATGTTGTCTCACACAATGTGACCGATATGGAAC---ACTGCGGATgcaacatttttcgaattctTTGGTTAGTAACT---GCC-------ACATAAACAAAATTGGAAGAAAGATAGCAAAG--GTTGTTAGTTTCAGTGCTCCATTCAAATATTTTCGCAAACGAGAAAGTGATATCATCAAGGAGGAAGTTTTGGAGTGAGTaggagaagaaaagaaaataatatt--gGAATGG----TTA------t------gt--------------------tattttcagaaaattcacaaaCAACAAGTTGAAACAGAAAGATGA---CGACACAGTTATCTTCAGAAGCTCGAATAAGCGCCGAGAGTCAACCGGTGACTTTTTGAAACGgtaatt
i caeJap4.Scaffold1521 C 0 C 0

a score=-1107.000000
s ce10.chrX            3730722 5 + 17718866 AGAAT
s caeSp111.Scaffold630 5831034 2 + 20921866 ---AT
i caeSp111.Scaffold630 C 0 I 268
s caePb3.Scfld02_0     2107421 2 +  4147112 ---GT
i caePb3.Scfld02_0     C 0 I 321
s caeJap4.Scaffold1521  129772 1 -   152914 ---a-
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8882457 8 + 21540570 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=0.000000
s ce10.chrX            3730727 3 + 17718866 ATT
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  129773 0 -   152914 C
e cb4.chrX             8882457 8 + 21540570 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=-1070.000000
s ce10.chrX            3730730 23 + 17718866 GGTTCAAACTTTATAATTTTAAA
s cb4.chrX             8882465  4 + 21540570 TGT-------------------A
i cb4.chrX             I 8 C 0
s caeJap4.Scaffold1521  129773 18 -   152914 -----aaaattattaatatTAAA
i caeJap4.Scaffold1521 C 0 I 280
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=372.000000
s ce10.chrX            3730753 11 + 17718866 CACGAGTGGTG
s cb4.chrX             8882469 11 + 21540570 CACTAACGGTC
i cb4.chrX             C 0 I 29
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  129791 280 -   152914 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=0.000000
s ce10.chrX            3730764 41 + 17718866 CGAGTAATTTCCTTGATCTATTAGTGCTAATGGAAAATATT
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  129791 280 -   152914 I
e cb4.chrX             8882480 29 + 21540570 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=-1842.000000
s ce10.chrX            3730805 245 + 17718866 TTAGTTTCTGGACATTTTTTGCGAAAAACTTCTAGAAAACGGCAAGAAAAGGTAGATGTCTGTTTTTGGCATTGCATTATTGTCTTT--AATGACGGAGAAACTTTTTTTGGAAACATTTTTTATTGTCCTATTTTTCCTATTAGAAATGCCCGTTGCCTTCTGCTTTACAGTGACAGCTTCCCTTTCA--ATGCTATTTAGTTTTATCAAAATCTAATCAAGCAACATTTTTCTCTAT------ATTTCAGTAA
s cb4.chrX             8882509 168 + 21540570 ttaatttttgaccgttt----cgaccattttcaggag---------------------------tttggagctcggttgtcatATTCCCAATAACTCTGAA---CTTTTTGGAGG------------------------tagtaaaacagacc--------------tagattgaaaatttcgcattcacaaaattattcaa------aaatacctagt---------ttttaagctatttGCCGACTTCTCTAA
i cb4.chrX             I 29 C 0
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  129791 280 -   152914 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776  84 -  4500979 I

a score=233.000000
s ce10.chrX            3731050 22 + 17718866 TAACAATTTTCGATTAAAACTT
s cb4.chrX             8882677 11 + 21540570 TAACTGTTTTC-----------
i cb4.chrX             C 0 C 0
s caeJap4.Scaffold1521  130071 22 -   152914 caaaaattttggaccaaaatat
i caeJap4.Scaffold1521 I 280 I 330
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=-1071.000000
s ce10.chrX            3731072 155 + 17718866 AAAACAACCGAGATATAAGAGTTTTCTTTAAAATGTATTATGGAAGTTCAAAAATTCCAAAAAAAAAATGAAATGTTCCTTCCATATTG-CATGTTGCCAACTGAACCGCTGCTGAAAGCTGGTGCTTATAAATTTGAGAAATGTGAAAAAACAAA
s cb4.chrX             8882688  94 + 21540570 -------------------CGtctttttca---------------gtacaaaact----GGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATG--------------------AAAAACTAGcaactatcaa----aaaattctatgaatacaaa
i cb4.chrX             C 0 I 188
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  130093 330 -   152914 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776  84 -  4500979 I

a score=0.000000
s ce10.chrX            3731227 152 + 17718866 TCATTTTGAAACTTGGTTTTTTAGATTACataataatttatattaaaaattGCTATTTGCCCTTGCATGTTTTAACATTTTATGACGTCTACGTAACTTGATTTTCCATTTTCTAAGATTTTTTAGTCTTAACATATATTTTTGTGttttat
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e caeJap4.Scaffold1521  130093 330 -   152914 I
e cb4.chrX             8882782 188 + 21540570 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776  84 -  4500979 I

a score=-363.000000
s ce10.chrX            3731379 79 + 17718866 attttaattttatattttaagtttttaaa---aatatttaGAACATTCATACAGCCACGTCGTATGTCGCAGAAATGTAGAT
s caeJap4.Scaffold1521  130423 62 -   152914 ACCCTAATGAGATATTTGAAATTCTCCCACCCAATACT----GCATT--TAAAGCCACCTTC-------CAAAAA-------
i caeJap4.Scaffold1521 I 330 C 0
e caePb3.Scfld02_0     2107423 321 +  4147112 I
e cb4.chrX             8882782 188 + 21540570 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=-1739.000000
s ce10.chrX            3731458 39 + 17718866 TACAGTTACATAATT----AATTTTTT--TTTTCAATTTCCGTAA
s caePb3.Scfld02_0     2107744 45 +  4147112 TATTGTTACTCAATTCAAGAGTTTGTTAGTTTTAAAACACAGTTC
i caePb3.Scfld02_0     I 321 I 2
s caeJap4.Scaffold1521  130485 32 -   152914 -ACAGTTGAC---------ATCTCGTT--TATctaaaatcttta-
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8882782 188 + 21540570 I
e caeSp111.Scaffold630 5831036 268 + 20921866 I
e caeRem4.Crem_Contig0  834776 84 -  4500979 I

a score=-1304.000000
s ce10.chrX            3731497 3 + 17718866 TTT
s cb4.chrX             8882970 3 + 21540570 ttt
i cb4.chrX             I 188 C 0
s caeRem4.Crem_Contig0  834860 3 -  4500979 ttt
i caeRem4.Crem_Contig0 I 84 C 0
s caePb3.Scfld02_0     2107791 1 +  4147112 T--
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold1521  130517 1 -   152914 t--
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5831036 268 + 20921866 I

a score=235337.000000
s ce10.chrX            3731500 465 + 17718866  
s cb4.chrX             8882973 470 + 21540570  
i cb4.chrX             C 0 I 8
s caeRem4.Crem_Contig0  834863 454 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 41
s caeSp111.Scaffold630 5831304 447 + 20921866  
i caeSp111.Scaffold630 I 268 I 28
s caePb3.Scfld02_0     2107792 461 +  4147112  
i caePb3.Scfld02_0     C 0 I 8
s caeJap4.Scaffold1521  130518 444 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-10828.000000
s ce10.chrX            3731965 27 + 17718866 GAAA---------AGTTACAGTTAGTTTTTTTTTTT-----
s cb4.chrX             8883451 12 + 21540570 AAAG------CAGAGTGT-----------------------
i cb4.chrX             I 8 C 0
s caeSp111.Scaffold630 5831779 34 + 20921866 aaaaaataagcAGAATGATA--CAAAATAagcatca-----
i caeSp111.Scaffold630 I 28 I 8
s caePb3.Scfld02_0     2108261 24 +  4147112 gaaa---------aatgaca---aaaatatgaatca-----
i caePb3.Scfld02_0     I 8 I 7
s caeJap4.Scaffold1521  130962 21 -   152914 --------------------GTTAAATTTGGTATTAAAAAT
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  835317 41 -  4500979 I

a score=170778.000000
s ce10.chrX            3731992 293 + 17718866 -----------------AAGCGG----TCGTT-----------------ATTTATAGGGGTTCGTTTAATGGTGTC-------------ACATACTGCTTTGC-----GTTTAAGAGAAAGAGTAGAAGTAGCGATGAGCTCCATAGCGAGCTGAAAT------T--AAAAGGTGATAGTCTGAAA------CAATTCAAT---------------------------TCAACTAACCGGCTGGCAGGTAAACATCTGACCAGTCCTTTCCACGACGTCCCAATGCGGTTGGCTCAATCCATTTTTTGTCCAGTGTTTTGAAATCAATGCATCCGTTTCTGTACAAATCAATTGCAGTCTTCACGTTCTTTCTGAAATTTTTCATATTTT
s cb4.chrX             8883463 277 + 21540570 -------------------ACGG----TCGTT-------------------------------GTTCGCTGTTTTC-------------CAGGACTGCACGGC----AGTTCAAGAGAACGAGTAGAAGTAGCGGTGTGCTCCGTAgcgtgctgaaaatttttca--gtaagGTTTATGAT-------CAGATGTTTAAAG---------------------------TTTTCTCACCAGCTGGAAGGTAGACATCGGACCAATCCTTTCCACGACGTCCCAAAGCTGTTGGCTCAATCCATTTCTTATCCAGAGTCTTGAAATCAATGCATCCGTTTCTGTACAAGTCGATGGCAGTCTTCACGTTCTTGCTATAA------AAATATT
i cb4.chrX             C 0 I 10
s caeRem4.Crem_Contig0  835358 295 -  4500979 -----------------agaCGG----TCGTT-------------------------------CTGGATGGGTTTCGTTAGAGGGGATTCAATACTGCTCAGC----AGTT-AAGAGAACGAGTAGAAGTAGCGATGAGCTCCGTaacgagctgaaaa------a--acaAGATGTTAGATGGAAAAACACGGAATGAAAG---------------------------AGAACGTACCAGCTGGAAGGTAAACGTCGGACCAATCCTTTCCACGACGTCCCAAAGCAGTTGGCTCGATCCATTTCTTATCCAAAGTCTTGAAATCAATGCATCCGTTTCTGTACAAGTCGATGGCAGTCTTCacgtttttgctgaaaaat---aagcaTT
i caeRem4.Crem_Contig0 I 41 I 10
s caeSp111.Scaffold630 5831821 297 + 20921866 -----------------aagggTGTTGtcgttcagaaaa---------aat-------gttaatttCGTTATTTTC-------------AATGACTGCTCGGC----AGTTTAAGAGAACGAGTAGAAGTAACGATGAGCTCCGTAGcgagctgaaaaat----attgaaggCTAATAACTGGAAA---AAGGATATC------------------------------TGAACAAACCAGCTGGCAGATAGACGTCAGTCCAGTCCTTTCCACGACGTCCCAAAGCAGTTGGCTCAATCCATTTCTTGTCAAGAGTCTTGAAATCGATGCATCCGTTTCTGTACAAGTCAATTGCGGTTTTCACGTTCTTGctgaaa------ctatttt
i caeSp111.Scaffold630 I 8 I 17
s caePb3.Scfld02_0     2108292 297 +  4147112 -----------------aaatgt----tcgtttcaagaa---------aattt----ggGTAGGGTCGTTATTTTT-------------CCGTACTGCTTGGC----AGTTTAAGAGAACGAGTAGAAATAGCGATGGGCTCCGTAGCGAGCTGGAAATT----A--GAATGAGgttgaatgaaaaaccaaaCAGCTA------------------------------AGAACAAACCGGCTGGCAGATAGACATCGGTCCAATCCTTTCCACGACGTCCAAGAGCAGTTGGCTCAATCCATTTCTTGTCGAGAGTCTTGAAATCAATGCAGCCGTTTCTGTACAAGTCAATAGCAGTTTTCACGTTCTTGCTGGAA------AAGTTTA
i caePb3.Scfld02_0     I 7 I 32
s caeJap4.Scaffold1521  130983 366 -   152914 CAgcgggagaaaaaaaagtatgg----TCGTTCAAAGTGTTTCGGCTCCATCTCCATGGACAATTTTAATGCATTC--------GAAAACAATGCTGATGTACAGATAGTTTAAGAGAACGAGTAGAAATAGCGATGGGCTCCGTAGCGAGCTGAAAATA----A--AGTTGATTATAAatcaaaa------taattaaatattttttcttgattaATATGTATTTCCTAAACCTACCAGCTGGAAGGTAAACATCAGACCAATCTTTTCCGCGACGGTTGAGGGCAGCCGGCTCGATCCACTTTTTGTCCAGTGTCTTAAAATCAATGCAACCGTTTCTGTACAAGTCAATAGCTGTCTTGACGTTTTTGCTGCAAAATTGAACTTCTT
i caeJap4.Scaffold1521 C 0 C 0

a score=-10388.000000
s ce10.chrX            3732285 27 + 17718866 --TTCACCCCCTCCCACAAAACTGTTCAG
s cb4.chrX             8883750 23 + 21540570 -----ttc-tcatcctGATTTATTTTCCC
i cb4.chrX             I 10 C 0
s caeRem4.Crem_Contig0  835663 24 -  4500979 -----AACGTCAGTATAAAAATTGTTCCT
i caeRem4.Crem_Contig0 I 10 C 0
s caeSp111.Scaffold630 5832135 11 + 20921866 -----------------ttttctattct-
i caeSp111.Scaffold630 I 17 C 0
s caeJap4.Scaffold1521  131349 28 -   152914 ATGAAAAacctaaattaatttttctccc-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2108589 32 +  4147112 I

a score=307780.000000
s ce10.chrX            3732312 254 + 17718866 TACGTGTCGTATTGCCATGGTCTCCAGCTATTCCAGAGTGGTCTGTCGTAGTTGGGATCGCGATAACGTCTCCAGTAAGTTGGGTTGAGCCAATCAGTGTACCACTTGTATCTCGACCAGAATGGAGCGTACTCGTGTCCCAAACTATGTGGGATCGGGTCCACATACAGTTGGCGACGGGCGGCAAAGCGGTAGGTTTGCCAGTAGAATGGAGTGTAGAACGTGTAACGATCAATGTTAGAGTCATCCAACTG
s cb4.chrX             8883773 254 + 21540570 TACGTGTCGTATTGCCATGGTCTCCAGTTGTTCCAGAGTGGTCTATCGTAGTTCGGGTCACGATAACGTCTCCAGTAGGTTGGGTTGAGCCAGTCGGTGTACCACTTGTATCTGGACCAGAATGGAGCGTACTCGTGTCCCAAGCTGTTTGGAATTGGGTCCACATAAAGTTGACGACGAGCGGCGAAGCGATATGTTTGCCAGTAGAATGGAGTGTAGAAGGTGTAACGATCGATGGCTGCGTCATCCAACta
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  835687 254 -  4500979 TACGTATCGTATTGCCATGGTCTCCAGCTGTTCCAGAGAGGTCTGTCGTAGTTCGGGTCACGGTAACGTCTCCAGTAAGTTGGGTTGAGCCAATCAGTGTACCACTTGTATCTGGACCAGAATGGAGCGTACTCGTGTCCCAAGCTGTGTGGGATTGGGTCAACATAAAGTTGACGACGAGCAGCAAAACGATAAGTTTGCCAGTAGAATGGAGTGTAGAAGGTGTAACGATCGATGGCTGCGTCatccaactg
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5832146 254 + 20921866 tacGTATCGTATTGCCATGGTCTCCAGCTGTTCCAGAGTGGTCTATCATAGTTGGGGTCACGATAACGTCTCCAGTAAGTTGGGTTGAGCCAATCGGTGTACCACTTGTATCTGGACCAGAATGGAGCATATTCATGTCCCAAACTATTTGGGATTGGGTCAACGTAGAGTTGACGGCGAGCGGCAAAACGATAAGTTTGCCAGTAGAATGGAGTGTAGAAGGTGTAACGATCGATATTTGCGTCATCCAACTG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2108621 254 +  4147112 TACGTATCATATTGCCATGGTCTCCAGCTATTCCAAAGTGGTCTGTCGTAGTTTGGATCACGGTAGCGTCTCCAGTAAGTTGGGTTCAGCCAATCAGTGTACCACTTGTATCTGGACCAGAATGGAGCATACTCGTGTCCCAAACTATTTGGGATTGGGTCAACATAAAGTTGACGGCGAGCAGCAAAACGATAAGTTTGCCAGTAGAATGGAGTGTAGAAAGTGTAACGATCGATGGCTGCGTCATCCAACTG
i caePb3.Scfld02_0     I 32 C 0
s caeJap4.Scaffold1521  131377 254 -   152914 TACGCGTCATAGTGCCATGGTCTCCAGCTGTTCCAGAGTGGTCTGTCATAGTTCGGGTCACGGTAACGTCTCCAGTAAGTTGGGTTCAACCAATCAGTGTACCACTTGTATCTGGACCAGAATGGAGCGTATTCGTGTCCCAAACTGTTTGGGATTGGATCCACATAGAGTTGACGGCGAGCCGCAAAACGATATGTCTCCCAGTAAAATGGAGTATAGAAGGTGTAACGATCGATGGCAGCGTCATCgagctg
i caeJap4.Scaffold1521 C 0 I 32

a score=-1587.000000
s ce10.chrX            3732566 24 + 17718866 AAAAT--------TGTTTCTTTTTACTCACAA
s cb4.chrX             8884027 21 + 21540570 aaaaaagggg---aaattcCTATT--------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  835941 24 -  4500979 aaaaaaaagaagcaatttCTTGTT--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5832400 17 + 20921866 CAAAAAAG-------TTACCTATT--------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2108875 19 +  4147112 AAAGAAGG-----AAATTCCCATT--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  131631 32 -   152914 I

a score=67270.000000
s ce10.chrX            3732590 215 + 17718866 CAATCTTTTGTATCTCATA--------TTTTTTGTTTGTTGATAGAGGATTTTTATTTCTCGACAAGCGTCAAAAACC-AGGTGA------GGAT-----------------GAATGTGAAAGATGATAAAGAAAAGAGACTGGCAATTGCAACGGACATTACACTTTTC-AGAAAGATGCC-AACAC--ATT--------TCTATCT--------------TTTCTGGG-----------AAAAATGACAA--AAAAAGTATAAAAAAAATTTCAATTGAACTTT
s cb4.chrX             8884048 203 + 21540570 -GA-------TATTTCTC-------------TGGTTTGTTGTTGGGAAAATAT----ATCCGTCAAGCGTCAAAAACC-AGGT--------GGatcgagaaaaagaagaagaaaaagagggaaa----------gagagaC-GACAATTGCAACGAACATTACACTTTTTAAGAAGGATGCc-aacacttttt--------tctatct--------------cttcTTGG-----------AAAAATGGCAGCAAAAAGTGGAATGGATCAG----ATTGAATTGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  835965 203 -  4500979 -GATCGATTCTATCTctca----gttttgttttgtttgttgTCAGAAAGAG---------CGTCAAGCGTCAAAAACC-AGGT--------GGAT-----------------AAAGAAGCAAGG----------AAGAGAC-GACAATTGCAACGGACATTACACTTTTC-AGAAGGATGCC-AACAC--TTT--------TCTATCT--------------CTTCtcagaaattgacaaaaaaactgggag--aaaaatgaagatgcCGAG----ATCAAATTTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5832417 198 + 20921866 -Gatctttc-tatctcttt--gaattttgttttgtttgttgatagaaaaatag-------cgTCAAGCGTCAAAAACCAAGGT--------ATAT-----------------GAAGAAGCAAG-----------AAGAGAC-GACAATTGCAACGGACATTACACTTTTC-AGTAGGATGCC-AACac--ttt--------tctatct--------------cttcttag-----------aaaaatgac-a--aaaagtggaaattccGGGTTTTATCAAATTTG
i caeSp111.Scaffold630 C 0 I 11
s caePb3.Scfld02_0     2108894 196 +  4147112 -Gatctttc-tatctctcttaggtttttgttttgtttgttgataGAAAAATAG-------CGTCAAGCTTCAAAAACC-AGGT--------GGAT-----------------GAAGAAGCACAA--------GCAGGAGAC-GACAATTGCAACGGACATTACACTTTTC-AGGAGGATGCC-AACAC--TTT--------CCTATCT--------------CTTCtgag-----------aaaaatggcaa--aaaagtggaaaagtgGGG-------AAATGTG
i caePb3.Scfld02_0     C 0 I 62
s caeJap4.Scaffold1521  131663 195 -   152914 CGATCTTTTCTATCCCTTT--------------GTTTGTTAATAGG--------------------GCGTCAAAAACC-AAGGAAGCTAACGATT-----------------GAAAATGGCGGA----------GGAAAAC-ACAGATTGCAGCGGACATTACACTTTTCCAAGAGAATGCTAAATAT--CTTCTCGGAAGTCTACCTATCGAATTACCCCattttttat-----------aggagtttttt--aaaaatgttattgttgtt----a---------
i caeJap4.Scaffold1521 I 32 C 0

a score=-18819.000000
s ce10.chrX            3732805 51 + 17718866 ---TGGA--------CGACTTT-----CCTTG-CAAAATAAAAGGTTTAAAATATTTGA----AAACATTTA---
s cb4.chrX             8884251 25 + 21540570 ---------------TGATCTC-----TATTG-TAATATAGTAATC-----------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  836168 48 -  4500979 ---------------CGTCTTCCA---TATTGCcaataaaaaaaacgagaggCGTATG------GACAAGGA---
i caeRem4.Crem_Contig0 C 0 I 5
s caeSp111.Scaffold630 5832626 47 + 20921866 ---CGCA----CAAttggttttgaaacaatcaaaaatataataaatatCTGCTG---------------------
i caeSp111.Scaffold630 I 11 C 0
s caeJap4.Scaffold1521  131858 72 -   152914 aggtgtatttttctttgaattttg---agttagaaaaaaaagaaacaaagtGGGTATAAacataaacaaaaattt
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2109090 62 +  4147112 I

a score=45007.000000
s ce10.chrX            3732856 161 + 17718866 ACTCACAGTATCGTAATCTCTACGGTATTTATGAAGAGTCGACG---AGTAGTTAGGTCCAACACGAACAGTTGAGAGATTTGGGTAGGATGTGACTCT------------------------------TAAACTT----------------------ATTTATTTTGAAATTTAGATAGCTTGA-------------AACATGTTATT-TTGC---------ATATGATATA----CAGACA
s cb4.chrX             8884276 238 + 21540570 ACTTACTGAATCGTAGTCACGACGATACTTATGAAGAGTCGATGGACGGTAGTTGGATCCGACACGGATGGTGGAGAGATTTGGAACAGAGGTCACTCTGGAAGTTTATATTTggggaaataaaaaatataaaatttcgctagtcaaaatttcaagctagggtttttagagaaaaagtaCTACAATTGAAATACTCctaaaactcactt-ttgaaGGCTTGATAAATAggata----tgattt
i cb4.chrX             C 0 I 84
s caeRem4.Crem_Contig0  836221 181 -  4500979 ACTTACCGAGTCGTAGTCTCTACGGTACTTGTGGAGAGTCGATGGACGATAGTTTGATCCAACACGGAAGGTGGAGAGATTTGGAACGGATGtaactct-----------------gaaataaaatat-tgaaatt------------atttggaa--atgattttca---aaaaactgttagGA-------------AACacctgttt-ttga---------aaaaaaaaca----cagtcA
i caeRem4.Crem_Contig0 I 5 I 85
s caeSp111.Scaffold630 5832673 168 + 20921866 ACTTACGGAGTCATAGTCTCTACGGTATTTATGAAGAGTCGATGGACGATAGTTGGATCCGACGCGGATGGTCGAAAGATTTGGAACAGATGTGACTCT---------------GGAAAATGGTcgtt-ttggaga---------aaaa------------------------caCGTGTTCAGG-------------CAGTTTTGTCTATACA---------ATACAGAATG----CAAATT
i caeSp111.Scaffold630 C 0 I 3
s caePb3.Scfld02_0     2109152 190 +  4147112 GCTTACCGAGTCGTAGTCTCTACGGTACTTGTGAAGAGTCGATGGGCGGTAGTTGGTTCCAACACGAAGGGTAGAAAGATTTGGAACTGATGTAACTct---------------ggaaaacgggaaaa-tagTACA---------AGGAAGTAGAGCAACGAATTT-----GTCATATACTGCGA-------------ATGACCGATCC-TAAA---------TTACGAGATGATGTCAGaac
i caePb3.Scfld02_0     I 62 I 3
s caeJap4.Scaffold1521  131930 138 -   152914 tcttacAGAGTCGTAGTCTCTTCGGTATTTATGAAGAGTCGATGGGCGGTAATTGCTTCCAACACGAAGAGTTGAGAGATTTGGAATCGATGTGACTCT----------------AGAAGCAG------TAAGATC-------------------------Gtttt-----tttACGtagtttac-------------aaaaa----------------------------------------
i caeJap4.Scaffold1521 C 0 C 0

a score=-39849.000000
s ce10.chrX            3733017 107 + 17718866 CA--AAACATCTAGTTA------------------------------------------------------------------------------GCAAAC--TTATTAGTTTTGAAACTGATAT---AAAAATT----------------GTAT------------ATCTCAGAGTTTCTGGTACA----TTTTTTAGCGCTGAACATCTATGTACAGTATTT-
s cb4.chrX             8884598 212 + 21540570 CATTAA------AGTAATCAAGATGAATTCGGTGAGATTTTACAGCTAATGGGCACCTCAATtatctacatttttgtaggaATTTTCAGTAATGTATGAAA--TGATACATTTTGGTACTGttataacaaaaatttcatcaatagacaaaaattttatatctCCTATAATAAAAGAGCTCCAGTATAAAGTGGtctt-ttattagagtgtt---tacggtattt-
i cb4.chrX             I 84 C 0
s caeSp111.Scaffold630 5832844  60 + 20921866 CA--AA------AGCCa------------------------------------------------------------------------------tcgaaa-------------------gtttttgaaagaatt----------------atTT----------------------------AATGAAATCTCATGAATTTCGGAA---------------CT-
i caeSp111.Scaffold630 I 3 C 0
s caePb3.Scfld02_0     2109345 127 +  4147112 ca--aa------agtta-------------gataaga-----------------------------------------------------aacgtttgaaaccggaaaagcTTT----CTGTACTTCAAAGCACT----------------GTTTGAACTCATTGAGTTTGAATAAGTCACGCAACAGAGTTTCCTGGGTACAGGAAacca---aataatattt-
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  132068  89 -   152914 -a--aa------aacaa------------------------------------------------------------------------------ctaaaa----aaatgttcaagttggaccatgaaaaaaact----------------ttgt------------tttaaaaaaat-----agcaaatatTTTTG---CCAGGAGATTT---------ACTTA
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0  836402  85 -  4500979 I

a score=-20939.000000
s ce10.chrX            3733124 40 + 17718866 ACCGT-ACTTTGCGCTTCAGTTTTTCCAATATCCGATTCAA
s cb4.chrX             8884810 33 + 21540570 actAGCATTCT----TCTGGCC--CAAaac--tcaattcaa
i cb4.chrX             C 0 I 106
s caeRem4.Crem_Contig0  836487 41 -  4500979 ACTATCATTTGAGAACCCGGTCTTCATAACTATCAAAATAA
i caeRem4.Crem_Contig0 I 85 I 1
s caeSp111.Scaffold630 5832904 25 + 20921866 ------ATTAGAGAATTCAacgatttttcc---------a-
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2109472 32 +  4147112 ------ttcagacgatCATGAAATTTTTGC--TCGGATTA-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  132157  7 -   152914 -------------GATCCCA---------------------
i caeJap4.Scaffold1521 C 0 C 0

a score=-23607.000000
s ce10.chrX            3733164 67 + 17718866 TTTTGTGTACTACCGGTTTTACGATAA--------TTTGGTTTCTTTT----AGCGATAACTTCT------------------------TAAAATAAAGTTTG
s caeRem4.Crem_Contig0  836529 93 -  4500979 TCTTCTGTAC---------TGTCATAGAAGTATCACTCAAATCCTGTT-TAAATAAATAAGTATTCTAGTTGAAAGATCCATGAAAGCTAAAAGTTCTGTTAA
i caeRem4.Crem_Contig0 I 1 I 22
s caeSp111.Scaffold630 5832929 41 + 20921866 -tttt------------------------------cttggACACCG------GTCAATGAACCTT-------------------------CAAATTGTGCTAC
i caeSp111.Scaffold630 C 0 I 10
s caePb3.Scfld02_0     2109504 53 +  4147112 -CTTT--------------TACTATAG-------ATTTGAACAcc-------gtcagttttttttata---------------------acaACTCGAGTTAT
i caePb3.Scfld02_0     C 0 I 19
s caeJap4.Scaffold1521  132164 23 -   152914 ----------------------------------------TTACTGCTTTCAGAAAATAAACT----------------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8884843 106 + 21540570 I

a score=-12178.000000
s ce10.chrX            3733231 53 + 17718866 CAGTTTTATATTTTTATCAAT-----TAATTTAACTTAACGTATTACATTCTATCAAA
s cb4.chrX             8884949 42 + 21540570 cATTTTTATCCCTCAATCGATATTTGTAAAATCA----------------CTATCAAA
i cb4.chrX             I 106 I 72
s caeRem4.Crem_Contig0  836644 37 -  4500979 cattttaacaAATGAATTGAC-----TAAAGTTA----------------CCCTCAAA
i caeRem4.Crem_Contig0 I 22 I 48
s caeSp111.Scaffold630 5832980 36 + 20921866 AAACTCTAGAATTGATGTAAC------AGGCACA----------------CAATTACA
i caeSp111.Scaffold630 I 10 C 0
s caePb3.Scfld02_0     2109576 37 +  4147112 GGACTCAAGATAATTTCTAAT-----AAAGTTGA----------------CTACTGTA
i caePb3.Scfld02_0     I 19 I 36
s caeJap4.Scaffold1521  132187  5 -   152914 -----------------------------------------------------TCaaa
i caeJap4.Scaffold1521 C 0 C 0

a score=-29.000000
s ce10.chrX            3733284 20 + 17718866 TCCCTAGTTCAGAAAAAGTT
s caeJap4.Scaffold1521  132192 20 -   152914 ttaaaattccaaaaGAATCA
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2109613 36 +  4147112 I
e cb4.chrX             8884991 72 + 21540570 I
e caeSp111.Scaffold630 5833016  0 + 20921866 C
e caeRem4.Crem_Contig0  836681 48 -  4500979 I

a score=245774.000000
s ce10.chrX            3733304 638 + 17718866  
s cb4.chrX             8885063 662 + 21540570  
i cb4.chrX             I 72 C 0
s caeRem4.Crem_Contig0  836729 597 -  4500979  
i caeRem4.Crem_Contig0 I 48 C 0
s caeSp111.Scaffold630 5833016 595 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2109649 574 +  4147112  
i caePb3.Scfld02_0     I 36 C 0
s caeJap4.Scaffold1521  132212 588 -   152914  
i caeJap4.Scaffold1521 C 0 I 1679

a score=1446.000000
s ce10.chrX            3733942 3 + 17718866 TAA
s cb4.chrX             8885725 3 + 21540570 TAA
i cb4.chrX             C 0 I 123
s caeRem4.Crem_Contig0  837326 3 -  4500979 AAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5833611 3 + 20921866 AAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2110223 3 +  4147112 AAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  132800 1679 -   152914 I

a score=1050.000000
s ce10.chrX            3733945 3 + 17718866 TTC
s caeRem4.Crem_Contig0  837329 3 -  4500979 ATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5833614 3 + 20921866 ATC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2110226 3 +  4147112 ATC
i caePb3.Scfld02_0     C 0 I 211
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885728 123 + 21540570 I

a score=300.000000
s ce10.chrX            3733948 1 + 17718866 C
s caeRem4.Crem_Contig0  837332 1 -  4500979 C
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5833617 1 + 20921866 C
i caeSp111.Scaffold630 C 0 I 117
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885728 123 + 21540570 I

a score=28.000000
s ce10.chrX            3733949 4 + 17718866 TATT
s caeRem4.Crem_Contig0  837333 4 -  4500979 CTTT
i caeRem4.Crem_Contig0 C 0 I 157
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885728 123 + 21540570 I
e caeSp111.Scaffold630 5833618 117 + 20921866 I

a score=0.000000
s ce10.chrX            3733953 816 + 17718866  
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885728 123 + 21540570 I
e caeSp111.Scaffold630 5833618 117 + 20921866 I
e caeRem4.Crem_Contig0  837337 157 -  4500979 I

a score=776.000000
s ce10.chrX            3734769 53 + 17718866 GAGCCCGCAACCTA--CCTTTGGCTTTGTGGA-------GAGCCGTCTTCAGGTGAGCACCG
s caeSp111.Scaffold630 5833735 62 + 20921866 GAGCCTCCAAACTCATCCTTTGACTTTCCGCCCGCCGCCAAACTGTTCCCGACTGAGTCCCG
i caeSp111.Scaffold630 I 117 C 0
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885728 123 + 21540570 I
e caeRem4.Crem_Contig0  837337 157 -  4500979 I

a score=-1688.000000
s ce10.chrX            3734822 6 + 17718866 GTCG--AA
s cb4.chrX             8885851 6 + 21540570 GCCGCG--
i cb4.chrX             I 123 C 0
s caeSp111.Scaffold630 5833797 4 + 20921866 ACTA----
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e caeRem4.Crem_Contig0  837337 157 -  4500979 I

a score=5630.000000
s ce10.chrX            3734828 67 + 17718866 CCGACAGTAACA--TATATCCTGATGAGGTTTGCGCAATCGT-CAGTAAGTTAGTCCGC-----TTAGTAATCGG
s cb4.chrX             8885857 66 + 21540570 CGGACAGTAACC--TATACCGC--CCGAGTTTGCGTAATACTCCGACAAGTGACCACGA-----TTAGTTAGTAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  837494 67 -  4500979 CCAACAGTAACCAATATATCGT--TTGAGTTTGCGCAATTCT-CACTGAATGAACCCGA-----TACCCAGGTAT
i caeRem4.Crem_Contig0 I 157 C 0
s caeSp111.Scaffold630 5833801 64 + 20921866 -CAGGAGTAACC--TATACCGC--------TTGCGTAATGAGCCGACAAATGGTCTCGATTAACTAACTAGGTGT
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2110229 211 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I

a score=18777.000000
s ce10.chrX            3734895 56 + 17718866 ACCCT--TGTCGGCTCATCTGAACAAACAATGTTCGTCATTGACTAG-TTAAC----AGATTA
s cb4.chrX             8885923 53 + 21540570 ATCCT--TGTCGGCTCATCTGAGCAAACAATGTAGAAC---GAGAAG-TGAAC----AAATTA
i cb4.chrX             C 0 I 976
s caeRem4.Crem_Contig0  837561 57 -  4500979 ATCCT--TTTCGGCTCATCTGAATAAACAATGTTAACA---TAGAAA-GTAATTATGAGATTA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5833865 57 + 20921866 ATCCTTATGTCGGTTCATCTGAATAAACAATGTTGATCA-GTAAAAG-TTAAC----AGATTA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2110440 56 +  4147112 ATCCT--TTTCGGCTCATCTGAACAAACATTGTACAAGA-GTAGCCGATTAGA----GGATTA
i caePb3.Scfld02_0     I 211 I 730
e caeJap4.Scaffold1521  132800 1679 -   152914 I

a score=-176.000000
s ce10.chrX            3734951 7 + 17718866 TGTGTAT
s caeRem4.Crem_Contig0  837618 4 -  4500979 ---TGAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5833922 7 + 20921866 AGAGAAT
i caeSp111.Scaffold630 C 0 I 455
e caePb3.Scfld02_0     2110496 730 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885976 976 + 21540570 I

a score=419.000000
s ce10.chrX            3734958 8 + 17718866 CGCTTGTT
s caeRem4.Crem_Contig0  837622 8 -  4500979 agtttgtt
i caeRem4.Crem_Contig0 C 0 I 238
e caePb3.Scfld02_0     2110496 730 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885976 976 + 21540570 I
e caeSp111.Scaffold630 5833929 455 + 20921866 I

a score=0.000000
s ce10.chrX            3734966 1762 + 17718866  
e caePb3.Scfld02_0     2110496  730 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885976  976 + 21540570 I
e caeSp111.Scaffold630 5833929  455 + 20921866 I
e caeRem4.Crem_Contig0  837630  238 -  4500979 I

a score=29.000000
s ce10.chrX            3736728 3 + 17718866 TAT
s caeRem4.Crem_Contig0  837868 3 -  4500979 TGC
i caeRem4.Crem_Contig0 I 238 C 0
e caePb3.Scfld02_0     2110496 730 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e cb4.chrX             8885976 976 + 21540570 I
e caeSp111.Scaffold630 5833929 455 + 20921866 I

a score=1105.000000
s ce10.chrX            3736731 8 + 17718866 CGTTTTAT
s cb4.chrX             8886952 8 + 21540570 CGTCCTCT
i cb4.chrX             I 976 C 0
s caeRem4.Crem_Contig0  837871 8 -  4500979 CGTCTTAC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2110496 730 +  4147112 I
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e caeSp111.Scaffold630 5833929 455 + 20921866 I

a score=1299.000000
s ce10.chrX            3736739 3 + 17718866 TGT
s cb4.chrX             8886960 3 + 21540570 TAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  837879 3 -  4500979 TGT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2111226 3 +  4147112 TGT
i caePb3.Scfld02_0     I 730 C 0
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e caeSp111.Scaffold630 5833929 455 + 20921866 I

a score=32533.000000
s ce10.chrX            3736742 195 + 17718866 TAATCGTTCGCACCT---T-ATCGG----GATTCT--CTTAGAAGTGAATTACTACAAGATATGTTACTCAAACACGTCGGCAAGTTGACTTTCATGTA-CCT--ATTCAATGTATTCTCATCTTTGTTCTACAAATTTCACACATTTTCGAGAATG--CTCATGCT-------CATCACATACTCTACAATATCATTCCCACATTAGTAAATAATA--------
s cb4.chrX             8886963 184 + 21540570 TAATCGTTCACACCTACCTAACAGAAACCGATTCT------GGAAAGAATTACTATTTAGGAATTTGTGCAAACACCGCGAC----TCTGTTTCATGTG-ATC--CCTTA-----TTCCCATCgttgttctaaaaatttgacacCGTTTTGAAGAGAGGCCCGTGCGAGCAGTCATTCACACCCTTTACAATAACATCCCGA-----------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  837882 173 -  4500979 TAATCGTTCACACCTACCT-ATGGTAACCGATTCT------------------CTTGAAGTTGTTTCTTCAAACAAGTCGG-----TATATTTCATCTGTCTC--TGTTaacct-ttctcttttttgtttcaaaaa-ttgacacgTTTTTGAGGAGA--CCCGTGCG-------ACTCACACCCTCTATAATAACAATTCTA-------ACATAATA--------
i caeRem4.Crem_Contig0 C 0 I 30
s caeSp111.Scaffold630 5834384 184 + 20921866 TAATCGTTCGCACCTACTT-ATAGTAACCGATTCT--------CTTGAATTGTAACATAGTCTGTTCCACAAAT-AGTCGgc----gtttttgattctg-tCCCATACTAGTGA-TTCCCATCTTTGTTCCAAGAAATTGACACATTTTTGTGGAAA--CCCGTGCT-------GTTCACACTCTCTACAATAAcattatga---------------aaa-gaaa
i caeSp111.Scaffold630 I 455 C 0
s caePb3.Scfld02_0     2111229 193 +  4147112 TAATCGTTCACACCTCCTT-ATAGTAAccgattcttcttttcacgTCTATTACTGTTTAGTCTTATTCTCAAACAAGTCGGC----ATTATTTCATCT--TTTAGTGTTAACAT-TTCTCATCTTTATTCCAACAAATTGACACCATTTTGTGGGAA--CCCGTGCA-------ATTCACACCCTCTACAATAACAAGACAC---------------CACTGAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  132800 1679 -   152914 I

a score=-1502.000000
s ce10.chrX            3736937 16 + 17718866 AGATGAACTCCTAAAC
s cb4.chrX             8887147 10 + 21540570 --ATGAGCT----GCT
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5834568 13 + 20921866 gaaccgACTC---GGA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2111422 13 +  4147112 GGATCGGCTA---GCA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  132800 1679 -   152914 I
e caeRem4.Crem_Contig0  838055 30 -  4500979 I

a score=68.000000
s ce10.chrX            3736953 18 + 17718866 AGGAGTAATTAGGATGTA-
s cb4.chrX             8887157 14 + 21540570 AGTGCTAATT----GGGA-
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5834581 13 + 20921866 TGCGCTAAT-----GGGG-
i caeSp111.Scaffold630 C 0 I 3
s caePb3.Scfld02_0     2111435 18 +  4147112 AGTGTTAATTTGGAGAGA-
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold1521  134479 15 -   152914 AGTACTAATT----AGGAT
i caeJap4.Scaffold1521 I 1679 C 0
e caeRem4.Crem_Contig0  838055 30 -  4500979 I

a score=57933.000000
s ce10.chrX            3736971 152 + 17718866 ACCAGTAAACGAGCACATCCGTATAAGCCGATAAAGC-----------TGCTCGATTTTTGAGTAACAAACAAT------ATAATGAT---ACACCCCTGTGTGCAGGC-TCATACATTTGTAGCCGTCATCTGCTGGCCAGTTGCG-TAGTGATTA----------TATCCTTTTGAACTTGG--
s cb4.chrX             8887171 152 + 21540570 ACAAACGAGCAAGTGTATCGATATAAGCCGATAAAGC--------TGTTGTTCAATTTCGAAGTAACAAACACACATCATATAATTATGAGGCACATTCTCCCTAGTGC-ACAT---CCC--AATCGTCATCTGTCGAACAGTTGGG--GTAAATG-------AACCTGCCCTTT-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  838085 156 -  4500979 ACAGA-AAACGAGCATATCGGAATAAGCCGATAAAGCTGTTCATGTGTTGTTCAATTTTGGAGTAGCAAACATA------ATAATTAT---ATACCCTCTTCCCCATCC-TAAT---TTCGTAATGATCATCTGCTGGACAGTTGGG-AATAGATAC----CCACTCTGCCCTTT-----------
i caeRem4.Crem_Contig0 I 30 C 0
s caeSp111.Scaffold630 5834597 158 + 20921866 ACTAGTAATCGAGCATCTCGATATAAGCCGATAAAGCTGTTCATGTGTTGTCCAATTTTATAGTAATAAACACA------ATAATTAT---ATACTCCCTTGCTCTTCC-AAAT---TTTGTAATCGTCATCTGCCAAACAGTTGGAGGATGGATTA----CCAATTTGTCCTTT-----------
i caeSp111.Scaffold630 I 3 C 0
s caePb3.Scfld02_0     2111456 157 +  4147112 ACGAATAATCGAGC------ACATAATCCGATAAAGCTGCTCCTATGTTGTCCAATTTTGAAGTAACAAACATA------ATAATTAT---ACA-TCCCTCGCTCATCCAAAAT---TTTGTAACCGTCATCTGTCAAACAGTTGGAGGAGAGATGAATATCCAATCTGCCCCTT--------A--
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  134494 146 -   152914 ---AAGGATCGGGTGTATCGGTGTAAGCCGATAAAGCTGCTCGTCTGTTGTCTAATTTTGAA-TAATAAACATA------ATAATGAT---GCAC-----CATGAATCC-TTAA---CTCATAATCGTCATCTGGTAAGCAGTTGTA-TGCATATCA--------TCTGCCACTT---------GG
i caeJap4.Scaffold1521 C 0 I 333

a score=21720.000000
s ce10.chrX            3737123 56 + 17718866 TGAACTTTTCAAAATTATTGTATTACAATC--AAGGAAATGTCACTTGGTCACGGAAG
s cb4.chrX             8887323 54 + 21540570 CGAACTCCTCAA----AAtatgctacagtaacccttgaATGTTACTTGGATACGGGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  838241 56 -  4500979 TGAACTCTTCAATGTCAGTGTAATACAGTG--TCTTTAATGACACTTGGTCACGGAAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5834755 55 + 20921866 TGAACTCATCATAATGAAGGCATTACAGTC--TCCTAGA-GCCACTTGGTCACGGAAG
i caeSp111.Scaffold630 C 0 I 349
s caePb3.Scfld02_0     2111613 56 +  4147112 TGAACTCATCATAATAAGTGCATTACAGTA--TCCTAAACGTCACTTGGTCACGGAAG
i caePb3.Scfld02_0     C 0 I 279
e caeJap4.Scaffold1521  134640 333 -   152914 I

a score=-94.000000
s ce10.chrX            3737179 4 + 17718866 TCGA
s cb4.chrX             8887377 4 + 21540570 TTGA
i cb4.chrX             C 0 I 707
s caeRem4.Crem_Contig0  838297 4 -  4500979 GAAA
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2111669 279 +  4147112 I
e caeJap4.Scaffold1521  134640 333 -   152914 I
e caeSp111.Scaffold630 5834810 349 + 20921866 I

a score=182.000000
s ce10.chrX            3737183 2 + 17718866 TA
s caeRem4.Crem_Contig0  838301 2 -  4500979 TA
i caeRem4.Crem_Contig0 C 0 I 302
e caePb3.Scfld02_0     2111669 279 +  4147112 I
e caeJap4.Scaffold1521  134640 333 -   152914 I
e cb4.chrX             8887381 707 + 21540570 I
e caeSp111.Scaffold630 5834810 349 + 20921866 I

a score=0.000000
s ce10.chrX            3737185 1076 + 17718866  
e caePb3.Scfld02_0     2111669  279 +  4147112 I
e caeJap4.Scaffold1521  134640  333 -   152914 I
e cb4.chrX             8887381  707 + 21540570 I
e caeSp111.Scaffold630 5834810  349 + 20921866 I
e caeRem4.Crem_Contig0  838303  302 -  4500979 I

a score=8358.000000
s ce10.chrX            3738261 10 + 17718866 ATATTTAGGC
s cb4.chrX             8888088 10 + 21540570 ATGTTTAgac
i cb4.chrX             I 707 C 0
s caeRem4.Crem_Contig0  838605 10 -  4500979 ATGtttagac
i caeRem4.Crem_Contig0 I 302 C 0
s caeSp111.Scaffold630 5835159 10 + 20921866 ATGTTTAGAC
i caeSp111.Scaffold630 I 349 C 0
s caePb3.Scfld02_0     2111948 10 +  4147112 ATGTTTAGAC
i caePb3.Scfld02_0     I 279 C 0
e caeJap4.Scaffold1521  134640 333 -   152914 I

a score=88672.000000
s ce10.chrX            3738271 118 + 17718866 AATTTTTACAAACA---ATCATAATGACGGGATTTAACGTTTTGTAGTGTGCACGCCTTGTTTTGTTACACAACTATCCATCTGC--TTGTTCTCCATACGGTATGA-GGGTCATCCACTTGTG
s cb4.chrX             8888098 122 + 21540570 aatttttccaaacaat-ATACCAATGAAAAGATTTATCGTGTTGAGAGCAGCACGCCTTGTTCGGTTACACAACTCTCCATCTGCCTCCTTGCCTTGTACAGTATGAGGGGTCATCCACTT-TA
i cb4.chrX             C 0 I 6
s caeRem4.Crem_Contig0  838615 120 -  4500979 aatttttccaaacaat-ACAGTAATGAAAGGATTTATCGTTTTGAGAGGAGAACGTCTTGTTCTATTACACAACTCTCCATCTGC--TCGTCTCCCATACGGTATGA-GGGTCATCCACTTGTG
i caeRem4.Crem_Contig0 C 0 I 6
s caeSp111.Scaffold630 5835169 121 + 20921866 AATTTCTGcaaacaataataataatagaCGGATTTATCGTTTTGAGAGCTGAACGCCTTGTTCTGTTACACAACTCTCCATCTGC--TCTTTCTCCATACGGTATGA-GGGTCAACCACTTGTA
i caeSp111.Scaffold630 C 0 I 68
s caePb3.Scfld02_0     2111958 120 +  4147112 AATAAATCTCAA-AACAATAATAAGAGAAAGAATTAACGTTTTGAGAGCTAAACGCCTTGTTCTGTTACACAACTCTCCATCTGC--TCGTTCCCCATACGGTATGA-GGGCTAACCACTTGTA
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold1521  134973 116 -   152914 aatttttccaaaCA---ATAACAATGAAAGGATTAATCGTTTTAAGAGGCGAAACCCATGTCCCATTGCACAACTCTCCATCTGC--TCAT-CCCCATACGGTAGTA-GGGTCATTC-CCTGTG
i caeJap4.Scaffold1521 I 333 C 0

a score=-16421.000000
s ce10.chrX            3738389 56 + 17718866 CACTCACAAACGGCTCTTACATTG---TGCATTACAGTTGTA-CAGCATCTCCC--------TGTTAC
s cb4.chrX             8888226 37 + 21540570 TAGTCATATTTATGT------------TGGACTACAGTCACT-----ATCCCtt--------------
i cb4.chrX             I 6 C 0
s caeRem4.Crem_Contig0  838741 53 -  4500979 CCTCCGTGTCGACATATAAGAACACACTACACAACAATTAAT-CGAGAACCCTC--------------
i caeRem4.Crem_Contig0 I 6 C 0
s caePb3.Scfld02_0     2112080 62 +  4147112 CCTCCGTTTACACATGTTATCCTCCACTCAACAACAGTAACAATAAGAACCCTGACTGAAAT------
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold1521  135089 37 -   152914 TCCACATGCCTGACTGACAAACGGGAAGGTCCTGTAA-------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5835290 68 + 20921866 I

a score=335967.000000
s ce10.chrX            3738445 709 + 17718866  
s cb4.chrX             8888263 735 + 21540570  
i cb4.chrX             C 0 I 119
s caeRem4.Crem_Contig0  838794 731 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5835358 738 + 20921866  
i caeSp111.Scaffold630 I 68 I 5
s caePb3.Scfld02_0     2112142 754 +  4147112  
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold1521  135126 703 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=832.000000
s ce10.chrX            3739154 10 + 17718866 -ATGAGGCAAA
s caeRem4.Crem_Contig0  839525 10 -  4500979 -gaaaggcCAA
i caeRem4.Crem_Contig0 C 0 I 131
s caeSp111.Scaffold630 5836101 10 + 20921866 -aaaaggaaaa
i caeSp111.Scaffold630 I 5 C 0
s caeJap4.Scaffold1521  135829 10 -   152914 GAGAAGGTAA-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2112896  2 +  4147112 I
e cb4.chrX             8888998 119 + 21540570 I

a score=-491.000000
s ce10.chrX            3739164 3 + 17718866 -ACC
s caeSp111.Scaffold630 5836111 3 + 20921866 -acc
i caeSp111.Scaffold630 C 0 I 197
s caeJap4.Scaffold1521  135839 3 -   152914 GGC-
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2112896 2 +  4147112 I
e cb4.chrX             8888998 119 + 21540570 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=251.000000
s ce10.chrX            3739167 4 + 17718866 AAAG
s caeJap4.Scaffold1521  135842 4 -   152914 AAGG
i caeJap4.Scaffold1521 C 0 I 109
e caePb3.Scfld02_0     2112896 2 +  4147112 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=-3068.000000
s ce10.chrX            3739171 337 + 17718866 GTTATCAGGTTAACAAGAACACCTGGAAAATGGAAAAACGTGAACATAGCTTAACTATACTGGAAAAAAAGTCTAGATAAAATTAGTTGAATCAATTAACACTTTATGAAATGTTGTACTATTATTGGACAACTGCAAAATTGATAATGGCAAAAATAGTTCTTATTTTTTAATTTTGGGTGAGTTATTCCCGCCTTTTAATTGTAAAATAAAATTTCTATAAAAATTTGACAAACTTCCATATTAAGTCTTTCAGGTAATTTTTAAGTGGACGTGGACTTAAAgctaaagtggttgttaaaaactac---tcctactaatggagccataattaccatat
s caePb3.Scfld02_0     2112898 154 +  4147112 ------------------------ggGAGAGGAAAGGA----------------------------AGAAGTTTTGACAAAA-----------------------------------------------CAGCTGT--------------CAACAATA------------------------CGGTATT-----------GTTGCGATATTGAAATTCagtaaataattga--------------aaacctTTCAG----------AATGAAAGTTCAttgaa---------ggattttgaaaactccgaGTTTTACTAA-----CAATAATTTTCATGC
i caePb3.Scfld02_0     I 2 I 14
e caeJap4.Scaffold1521  135846 109 -   152914 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=0.000000
s ce10.chrX            3739508 24 + 17718866 atcaaattttccaaacaatttgtg
e caePb3.Scfld02_0     2113052 14 +  4147112 I
e caeJap4.Scaffold1521  135846 109 -   152914 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=-235.000000
s ce10.chrX            3739532 165 + 17718866 aaaatttttattgacagccgaaaagtggcaattactgaatttttgccactTTATGAGGAAACTA---GAGCTCTGTTGCAT---GTTATTTGCAATGTTGGAATTTTAGTATTCaaggaaatttttttgttcgacgactttcaaaaaaagtggcaacactgagtatttacc
s caePb3.Scfld02_0     2113066 130 +  4147112 AGAATATATTTTGATACCcgggaaagtgaaa------------------------aaaaaactgtttgaaatcaGCTACATCCAGTGATTTG-AGTAGAGGTGCTTTG------AAAGCA----------TCGACAATTTACATAACAAGTCTCAGAAACGGACGTTAATT
i caePb3.Scfld02_0     I 14 I 48
e caeJap4.Scaffold1521  135846 109 -   152914 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=0.000000
s ce10.chrX            3739697 45 + 17718866 acttttttgaaacaaaacaaaatattttaaataaaacttagtttc
e caePb3.Scfld02_0     2113196 48 +  4147112 I
e caeJap4.Scaffold1521  135846 109 -   152914 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=-2380.000000
s ce10.chrX            3739742 257 + 17718866 actgtgatattcgggcattttCGCAATTTGCTCCATTTATGACTGAACAGAGCTTTTAAACTATTATATTTTCCTTCTGTGTACTTGTGAAGATTTCTATCGAGATATCAAAAATGTCAAAAAAACATTTTTTTTCATCAAATCTGATTACCGGGAAAGTGTTATTTTCTGCATCACTTTAAAATCACTGTCTGTGAATTTGGATTGTACAAAACTAAATTTGACTTCTCGCACCAAATTAATTTCAAAATCTGAGC
s caePb3.Scfld02_0     2113244 154 +  4147112 ACTGTAACAGT---------TCGAAATCAACTC------------AAGAGATAGTTTAAAAAAT--------CCTTCT-------TACAACAACCTATAC-------------ATgt---aacatcattttttc------aatcttccaTTCAGCAAGGCACCCTATTGTTGATATTGTTAACA-CACACTTTGTGAAATTaga--------aacgaaatg------------------------------------
i caePb3.Scfld02_0     I 48 C 0
e caeJap4.Scaffold1521  135846 109 -   152914 I
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=-397.000000
s ce10.chrX            3739999 18 + 17718866 TTGAAATTCTCTGTTTGG---
s caePb3.Scfld02_0     2113398 14 +  4147112 --aaaatcaTATGTTC-----
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  135955 19 -   152914 tttaaattaaTTGTTT--CAA
i caeJap4.Scaffold1521 I 109 C 0
e cb4.chrX             8888998 119 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=411.000000
s ce10.chrX            3740017 11 + 17718866 TCTCAATTTTC
s cb4.chrX             8889117  9 + 21540570 TTTC--TCTTC
i cb4.chrX             I 119 I 3
s caePb3.Scfld02_0     2113412  2 +  4147112 ---------TC
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold1521  135974 11 -   152914 TATCAATTTTC
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=91.000000
s ce10.chrX            3740028 1 + 17718866 A
s caeJap4.Scaffold1521  135985 1 -   152914 A
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2113414 2 +  4147112 I
e cb4.chrX             8889126 3 + 21540570 I
e caeSp111.Scaffold630 5836114 197 + 20921866 I
e caeRem4.Crem_Contig0  839535 131 -  4500979 I

a score=249891.000000
s ce10.chrX            3740029 857 + 17718866  
s cb4.chrX             8889129 767 + 21540570  
i cb4.chrX             I 3 I 30
s caeRem4.Crem_Contig0  839666 886 -  4500979  
i caeRem4.Crem_Contig0 I 131 C 0
s caeSp111.Scaffold630 5836311 871 + 20921866  
i caeSp111.Scaffold630 I 197 I 9
s caePb3.Scfld02_0     2113416 871 +  4147112  
i caePb3.Scfld02_0     I 2 I 5
s caeJap4.Scaffold1521  135986 859 -   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=793.000000
s ce10.chrX            3740886 18 + 17718866 TGTATTGGA------TTAAAATAT
s caeRem4.Crem_Contig0  840552 18 -  4500979 CAATTAGGA------TTATGAttt
i caeRem4.Crem_Contig0 C 0 I 17
s caeSp111.Scaffold630 5837191 18 + 20921866 taGATTAGG------TTATCATTT
i caeSp111.Scaffold630 I 9 C 0
s caePb3.Scfld02_0     2114292 24 +  4147112 TATGTGagaactcttttttcacat
i caePb3.Scfld02_0     I 5 C 0
s caeJap4.Scaffold1521  136845 18 -   152914 cgtattagG------TTTTGATCA
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8889896 30 + 21540570 I

a score=-4396.000000
s ce10.chrX            3740904 17 + 17718866 -------------GAGTTAATTGGAAAACG
s caeSp111.Scaffold630 5837209  8 + 20921866 -------------CCAT---TTGG------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2114316 11 +  4147112 -------------cTATCAGCTGG------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  136863 17 -   152914 AAGTCGTACTCAAAAAT-------------
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8889896 30 + 21540570 I
e caeRem4.Crem_Contig0  840570 17 -  4500979 I

a score=152.000000
s ce10.chrX            3740921 3 + 17718866 ATT
s caeJap4.Scaffold1521  136880 2 -   152914 -TT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2114327 0 +  4147112 C
e cb4.chrX             8889896 30 + 21540570 I
e caeSp111.Scaffold630 5837217 0 + 20921866 C
e caeRem4.Crem_Contig0  840570 17 -  4500979 I

a score=251608.000000
s ce10.chrX            3740924 315 + 17718866 TAGAGTA-TTACCTTTGCCTGGATCATCAAAGTTTCTTGGAACTTTGACAAAGCACTTGTTGAGGGAGAGGTTGTGGCGGATGGAGTTTTGCCATCCCTGCTTGTTGTCCCGGTAGAATGGGTAATTGGTGACGATGTATTCGTAAATTCCAGCCAATGTGAGACGTTTTTCTGGACTGTCTTTGATGGCCATCATGATCAATGCATTGTAGGAGAATGGTGGCTTGTCGTTCGGAGAGCTTGGAGTTTTCTCTTCTGAGTTGCTGGATGATGGTGACTTGGAATCCTGAATAAGTGGAATACTTCGAAATTGAAC
s cb4.chrX             8889926 284 + 21540570 TAATTTT-TTACCTTTTCCTGGATCATCGAAATTTCTTGGAACCTTGACGAAACATTTGTTGAGTGAGAGATTGTGGCGGATGGAGTTCTGCCATCCCTGCTTGTTATCCCGGTAGAATGGATAGTTGGTGAGGATGTAGTCGTAGATTCCAGCAAGGGTCAGACGTTTTTCCGGGCTATTTTTGATAGCCATCATTATCAAGGCGTTGTATGAGAATGGTGGCTTGTCATTCGGGGAGCTTGGTTTTTTGTCATCAGACGAGTTAGAGCATGGTGACTTCGAAT-------------------------------
i cb4.chrX             I 30 C 0
s caeRem4.Crem_Contig0  840587 282 -  4500979 taa--ag-ttaCCTTTTCCTGGATCATCGAAGTTTCTGGGAACCTTGACGAAGCACTTGTTGAGGGAAAGATTATGACGAATGGAATTCTGCCATCCTTGTTTGTTATCCCTGTAGAATGGATAGTTGGTGAGGATGTATTCGTAGATTCCAGCAAGTGTCAGACGTTTTTCCGGACTGTTTTTGATAGCCATCATGATGAGAGCATTGTAGGAGAATGGTGGTTTGTCATTTGGTGAACTTGGTTTCTTGTCATCGGAAGCATTTGAGCATGGCGACTTTGAAT-------------------------------
i caeRem4.Crem_Contig0 I 17 C 0
s caeSp111.Scaffold630 5837217 303 + 20921866 --------TTACCTTTTCCTGGGTCATCAAAGTTTCTGGGGACTTTAACAAAGCATTTATTCAAGGATAAGTTGTGACGAATCGAATTTTGCCATCCTTGTTTGTTATCTCGATAAAATGGATAGTTGGTGACAATATAATCGTATATTCCAGCCAAAGTCAAACGTCGTTCCGGACTATTTTTAATAGCCATCATTATAAGCGCATTGTACGAGAATGGTGGTTTGTCAGTCGGcgaatttgatttcttctcatcGGAAGAGTTTGAACATGGTGATTTTGAATcctaaaatataaaaataagt-----tttgag
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2114327 298 +  4147112 --------TTACCTTTTCCTGGATCATCGAAGTTTCTTGGAACTTTCACAAAACATTTGTTGAGAGACAAGTTGTGACGAATGGAATTTTGCCATCCTTGCTTGTTATCCCGGTAGAATGGATAGTTGGTGGTGATGTAATCGTAGATTCCAGACAATGTCAAACGTTTTTCTGGACTATTTTTGATAGCCATCATTATCAGAGCGTTGTAGGAGAATGGAGGTTTGTCGTTTGGTGAACTTGGCTTCTTCTCCTCTGAGGAGTTGGAACATGGCGACTTGGAATCCTGAA--ACAAGAATAA--------TATAC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  136882 313 -   152914 TATAGTACGAACCTTTTCCTGGATCATCGAAACTTCTTGGAACTTTGACAAAGCACTTGTTCAATGATAAGTTGTGACGGATTGAGTTCTGCCATCCTTGCttgttttctttgtaaaaaggATAGTTTGTGACAATGTACTCATAAATTCCAGACAGTGTCAAGCGCTTTTCTGGACTATTCTTGATTGCCATCATAATCAATGCGTTGTAGGAAAATGGCGGCTTGTCATTTGGCGAGCTCGGTTTCTTCTCATCCGATGCATTTGAACTGGGTGATTTGGACTCCTGA---AACTAAACGTATTGTAATTAAAC
i caeJap4.Scaffold1521 C 0 I 20

a score=-2680.000000
s ce10.chrX            3741239 24 + 17718866 GTAGAGAGGGAATTTAATGATTAG
s caeSp111.Scaffold630 5837520 19 + 20921866 ttttcaaagaTATCT--TCTC---
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2114625 24 +  4147112 TCCCTAAACTAATCGAATCTCGGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  137195 20 -   152914 I
e cb4.chrX             8890210  0 + 21540570 C
e caeRem4.Crem_Contig0  840869  0 -  4500979 C

a score=351923.000000
s ce10.chrX            3741263 508 + 17718866  
s cb4.chrX             8890210 551 + 21540570  
i cb4.chrX             C 0 I 3
s caeRem4.Crem_Contig0  840869 514 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 36
s caeSp111.Scaffold630 5837539 508 + 20921866  
i caeSp111.Scaffold630 C 0 I 2
s caePb3.Scfld02_0     2114649 516 +  4147112  
i caePb3.Scfld02_0     C 0 I 8
s caeJap4.Scaffold1521  137215 542 -   152914  
i caeJap4.Scaffold1521 I 20 C 0

a score=-1734.000000
s ce10.chrX            3741771 13 + 17718866 AAAACGTATGCTT
s cb4.chrX             8890764  8 + 21540570 ----AACAGGTT-
i cb4.chrX             I 3 C 0
s caePb3.Scfld02_0     2115173 12 +  4147112 AAGAGATAGCTT-
i caePb3.Scfld02_0     I 8 I 332
s caeJap4.Scaffold1521  137757 12 -   152914 CATCAATTGACT-
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5838047  2 + 20921866 I
e caeRem4.Crem_Contig0  841383 36 -  4500979 I

a score=-4092.000000
s ce10.chrX            3741784 21 + 17718866 --------TTGATAGAA-------------TAAAGTTAGGAA
s cb4.chrX             8890772 21 + 21540570 --------CTGACTGAA-------------TGTATCTAGGAA
i cb4.chrX             C 0 I 1
s caeSp111.Scaffold630 5838049 30 + 20921866 --------tagaggGAAAAGGTCAGAACACTGAATCTG----
i caeSp111.Scaffold630 I 2 C 0
s caeJap4.Scaffold1521  137769 24 -   152914 TCTACAGTTTAATTCAA----------TGATGAA--------
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2115185 332 +  4147112 I
e caeRem4.Crem_Contig0  841383 36 -  4500979 I

a score=-5290.000000
s ce10.chrX            3741805 15 + 17718866 TTTAAGAAGAAGTAA-----------------------------------
s cb4.chrX             8890794 15 + 21540570 CCTAGAAGCAAGCCA-----------------------------------
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0  841419 15 -  4500979 TCTGAGAGTCAGAAA-----------------------------------
i caeRem4.Crem_Contig0 I 36 C 0
s caeSp111.Scaffold630 5838079 14 + 20921866 -ttcaatgaaaacta-----------------------------------
i caeSp111.Scaffold630 C 0 I 332
s caeJap4.Scaffold1521  137793 49 -   152914 -TTGACCGAAAGCTTATCATGTCTAATTTGCCGGCATAgaaaatgggtta
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2115185 332 +  4147112 I

a score=-7331.000000
s ce10.chrX            3741820 40 + 17718866 CTGGAATTTAGGATAGCACATATATTTAG-------------AGCTCTATAAT--------
s cb4.chrX             8890809 16 + 21540570 TT------------------------TTG-------------ATCTATCTAAT--------
i cb4.chrX             C 0 I 258
s caeRem4.Crem_Contig0  841434 13 -  4500979 CT----------------------------------------GGATATCTAAA--------
i caeRem4.Crem_Contig0 C 0 I 10
s caeJap4.Scaffold1521  137842 52 -   152914 ---------cggtaattgtgtgttttttgtttgaagtTAGCAACATTTTCAATATGATACT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2115185 332 +  4147112 I
e caeSp111.Scaffold630 5838093 332 + 20921866 I

a score=-10671.000000
s ce10.chrX            3741860 203 + 17718866 -------------TATCCGAGATTTTGGAAA-GCTATA----TTGTGAAG-----------------------------------GCTTAATGTTTCTAAAGTTTGACTTAAAGAATAA---TCGTA------TTAATATGAATTTAAGTGTTAAAGTGGAGTTTTTCGATATGC--------AAGGATATTCTTTTGAAAACCA-------------AAAACAAAATAGTTGTTC--------------CTTGGCT-CTAATC-TCTAAATGCATA---CTTTTTCCTAGAAGGTTT--------GCAAACA--
s caeRem4.Crem_Contig0  841457 222 -  4500979 -------------TCTCC----TTGTGGACATGTTATA---GCTGAGAAA----------------------------------TGGTTAATAAGATTCAAAACTAATCTGGTAATTCA---TTAGA------CTAA-ATCGATT-----------GTCTATCTTATCTCTATGCCCTTATCGAATAATAAAACTATAAATAACACAGATTAATTCATAAAACATAATACCAATTCTtagcaaaactatttttgtct-CTAATCTTCTTGATGAA-------CTTCTCTGGAAGATTT--------TGGAAGA--
i caeRem4.Crem_Contig0 I 10 I 38
s caeJap4.Scaffold1521  137894 273 -   152914 AGCCTGAGCAAGATTTTT----TGATAAAGATGAAATAGTTGTTGAAAAGTGAATGTCTATTGATTTGATACCATATCACCTGCTACTTAACGTTCTGGTGATTGGATTTAAAGACTCATATTTGAAAAGTTcttaa-aatattttaaaagctTG-ATTAAACTTATC---------------AGTGATAAAATTTTAGATCTAC---GTTATAGAATAAAACAAAATCCTA------------------TTTGACTAATGATCATTTAAaatgataaactttgtttctAGAAGCTATCAGTACCCAAGAAGACA
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2115185 332 +  4147112 I
e cb4.chrX             8890825 258 + 21540570 I
e caeSp111.Scaffold630 5838093 332 + 20921866 I

a score=-6780.000000
s ce10.chrX            3742063 52 + 17718866 CGTACACACAAATGT-----------------AATAACAGCTTATACTAAGAT-----CTATCTTAAAATTAAA---------------
s caeRem4.Crem_Contig0  841717 63 -  4500979 TGCCTAcagggatttttttttcgaaaataggaGACA------TACACTTCAGt-----attttgttgaaaagga---------------
i caeRem4.Crem_Contig0 I 38 I 13
s caePb3.Scfld02_0     2115517 46 +  4147112 TACCTACATTAGTTT-----------------GATA------AAAACACTAGG-----ATATCATCAAAGCAAA---------------
i caePb3.Scfld02_0     I 332 C 0
s caeJap4.Scaffold1521  138167 62 -   152914 --CCTACTTT--CTT-----------------AATA------AAACTTCCAATTGCTCATGTTATCAATTAGAACCGTGCACTGATAAC
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8890825 258 + 21540570 I
e caeSp111.Scaffold630 5838093 332 + 20921866 I

a score=-5786.000000
s ce10.chrX            3742115 18 + 17718866 TAGAAAACG---------AACC-----AACCC
s caeRem4.Crem_Contig0  841793 27 -  4500979 taaaaaaagaaaacatgcGACA-----TACCT
i caeRem4.Crem_Contig0 I 13 C 0
s caeSp111.Scaffold630 5838425 30 + 20921866 --TagaaaattaacaaaaaatatctaCTAACC
i caeSp111.Scaffold630 I 332 C 0
s caePb3.Scfld02_0     2115563 11 +  4147112 ------------------AATA---ATTACCT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  138229 18 -   152914 TGATAAACC---------AATt-----aacac
i caeJap4.Scaffold1521 C 0 I 80
e cb4.chrX             8890825 258 + 21540570 I

a score=-1072.000000
s ce10.chrX            3742133 46 + 17718866 GTGGAT-TCTT---GCTTGAT---GCATGGTTGAGTTGAAATGTGAAGTTGTT
s caeRem4.Crem_Contig0  841820 49 -  4500979 TTAGGA-G---AGAGTTGAACAGTTGATGATTGCATTGAAAGAAAGTTGGGCT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5838455 50 + 20921866 TTGTGTAGGTTGAAGCTGAAC---TGTCGATTGCATTTGATGAAGCGAATGTT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2115574 49 +  4147112 TTGGGT-GCCTGCAGTTGAAT---TGAAGACTGTGTGGGGAGAAGGGACTGCT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138247 80 -   152914 I
e cb4.chrX             8890825 258 + 21540570 I

a score=-350.000000
s ce10.chrX            3742179 1 + 17718866 C
s caeRem4.Crem_Contig0  841869 1 -  4500979 C
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5838505 1 + 20921866 G
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2115623 1 +  4147112 G
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  138327 1 -   152914 C
i caeJap4.Scaffold1521 I 80 C 0
e cb4.chrX             8890825 258 + 21540570 I

a score=51450.000000
s ce10.chrX            3742180 60 + 17718866 AATCTTGACCGCCTCT----------TCAACAAGGTCCGGGCACAGATCCAGAATCGAGAATCGAGCCAT
s cb4.chrX             8891083 60 + 21540570 AACATTCATTGCCTTC----------TCGACGAGATCTGGACACAGATCCAGGATGGAGAATCGAGCCAT
i cb4.chrX             I 258 I 37
s caeRem4.Crem_Contig0  841870 60 -  4500979 GATTTTGATAGCATTG----------TCTACGAGATCCGGGCAAAGATCCAAAATAGAGAATCCGGCCAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5838506 60 + 20921866 AACCTTGGCTGCTTTA----------TCAACAAGATCCGGACACAAATCCAAAATAGAGAATCGGGCCAT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2115624 60 +  4147112 CGCCTTGACTGCCTTT----------TCGACGAGGTCCGGGCACAAATCCAGAATGGAGAATCGAGCCAT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  138328 70 -   152914 TGTCCTGATTGCTTTTGGCCAAAGTGTCCACAAGATCCGGGCATAAATCCAAAATTGAGAATCGAGCCAT
i caeJap4.Scaffold1521 C 0 C 0

a score=-1347.000000
s ce10.chrX            3742240 18 + 17718866 CAGAATTCGAGTCGTTTT
s caeRem4.Crem_Contig0  841930  9 -  4500979 ---------GATAGATAA
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5838566  9 + 20921866 ---------GATAGATGT
i caeSp111.Scaffold630 C 0 I 3
s caePb3.Scfld02_0     2115684  9 +  4147112 ---------GATAGTTGA
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold1521  138398  7 -   152914 ---------GATAAGC--
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             8891143 37 + 21540570 I

a score=98680.000000
s ce10.chrX            3742258 166 + 17718866 CCTGAGATTT-GGAAAGTTGGTATACTGATGCGATTTGGTATGGAAACAATGACACGACAAAGTGATGG--GTCCAG----TGTGGGTGGGACTAACCACTGCGA-TCACCCG--GCTGGCGTGGCCT-GC---------------ACGGTAGAGAGTGTG-CGG--GGGGACCCA-AGA-------TGAAAGAGTGAACCGA
s cb4.chrX             8891180 196 + 21540570 CTGGAGATTTGATAAAGTTGGTATACTGAAGCAATTTGGTATGGAAACAATAACACGAAAAAGTGATGGGTGTCTTA----GGTGGGAGGGGCGGGCCAACGCGGCCGACTCGGTGGAGGCGTGGCCT-GGCGGGGGAAGATGGTAGTGGTAGGTGAGATG-CGAAAGGGACCCCG-CGCTTTGACTTGAAAGACGATGCCGG
i cb4.chrX             I 37 C 0
s caeRem4.Crem_Contig0  841940 168 -  4500979 -CTGAGATTTTATCAAGTTGGTATACTGAAGCGATTTGGTATGGAAACAACGACACGACAAAGTGATGGA-GTCTTA----GG-GGGAGGGGCGAACCAACGCGG-CGGGTCG--GAAGGCGGGGTTT-GT---------------ATGgtagaggaaaag-agaaagaagggcCG-AGA-------TGAAAGAGGATGCCGT
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold630 5838578 171 + 20921866 GCTGAGATTT-ATCAAGTTGGTATACTGAAGCAATTTGGTATGGAAACAATGACACGACAAAGTGATGG--GTCTTA--TGGGTGGGAGGGGCGAACCACTGCGA-TGAGT-AGGGTAGGCGTGGTCT-GT---------------ATGGTAGAGGGAGAG-AGGGTAAAGGGCCG-AGA-------TGAAAGAATGAACCGA
i caeSp111.Scaffold630 I 3 C 0
s caePb3.Scfld02_0     2115696 170 +  4147112 GCTAAGATTT-ATCAAGTTGGTATACTGAAGCGATTTGGTATGGAAACAATGACACGACAAAGTGATGG--GTCT------GGTGGGTGGGGCGATCCACTGCGA-CGAGTCGGGGGAGGCGTGGTCT-GT---------------ATGGTAGAGGgtgagaaggaaaaagggcCGAAGA-------TGAAAGAAGTAACCGA
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  138405 155 -   152914 ACTGAGTTTT-GTCAAGTTGGTATACTGAAGCGAATAGGTATGGAAACAATGACGTGACAAAGTGATGG--GACATACACAGAGGGGAGGAGCTAGCCAGTGCGa------cagagtgggcggagcctcgc---------------aCGGTAGGG----TG------------CCG-ACT-------TGAAAGAGAGAACCGA
i caeJap4.Scaffold1521 C 0 I 397

a score=-16410.000000
s ce10.chrX            3742424 210 + 17718866 A--TGGTCTCCCAACTACGTAGAAAAGGGTGCAAAAAG----TATAGTAAAGCGGTGAA----GACTAACGGGGATATCAAAAATGTTTGAGTATGAAGAAAA----AACCAAAGAGGC-------------------------GTTTCCAAGGATGATTATGGTGGAA------GTGTTCTATTCTG-CATG----ACTTTTAAATCACTGTCTGTCTGAACAGAAAATTCGAACGTCTAAAAAATGTGCATGATTTT-G
s cb4.chrX             8891376 223 + 21540570 CG-TGacctccgaaaaaaaaaagaaggtgttAAACG-GGTGTTGTATGAAGAATATGAA----GAGCAGCA------------------AGGTGTTGAA--GA----AACCGATATGCATAGGTATGTACACGCCTTTCTTCTGATCTTCATCGGGGGAAATCAAGGGAGGAATGGTGTTCAGTTAAG-CGTGACAAAACGGAATATCACTGTCTGTCTGAACGGCTATGTCTATT------GGAACGTGCATAAATTTG-
i cb4.chrX             C 0 I 1130
s caeRem4.Crem_Contig0  842108 193 -  4500979 CA-TGACCTCCGAACACCttagaaagaaatgaaatgcgGAACTATATTGAAGGTATCGGTATCGAGCAGCAC-----------------AGGTGCGAAAATGA----AAGTAATATG------------AGCGCCC--------ATGTTCATCAAGGCTAATCTTGGAA------GTGTTCATTTTGGACATGTCTAGGAATTAAATCATCGTCTgtctgaacacatttttc-----------gaaCGTCTG---------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5838749 174 + 20921866 CACTGACCTCCGAACACAGAACATATAAGTGAGAGGCGTATCCATATTA--------------GATCAGAGCAAA--------------AGGtgtgaaaaagaatggaaacgATAT----------------------------ACTTTTGTGAAGGTTGATCATGAAA------GTGTTCAATTATG-CATG---------------ATTGAAACTTTAAATCACTGTCTACACG------AAAACA-GCAATAGTTT--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2115866 167 +  4147112 CACTGACCTCCTAAGAAAA-------AGGTGAGAGGCATATCGACAATAACGGAAAACG----GTTTAGAGCCAA--------------AGGTGTGAATGAGA----AACTAATA--------------------------------TTCATGAAGGCTAATCCTAAAT------ACGTTCAATTAGG-CATG------------AATATTGa----ctgaat--cttttttcatc------aagatATTCATTAGTTT--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I

a score=-26224.000000
s ce10.chrX            3742634 171 + 17718866 ------------------------------------------AAAGT----GCAATTCATTAATATGATATTTGATAACTTAAGAACTTAATCTTACATAACTTGATAATTGAGGAATATGAAATTAGAC-CAAATTAACGAAGGAAGACAA----AAAAGTTTTATAATCAAGTATTATGACCCGTCTTCTTC--CTATATTTTTTTACAATGACTTCTGATG--------------
s caeRem4.Crem_Contig0  842301 115 -  4500979 ---------------------------------------ATTAGCAT----gtgacattttca--------------------------------gtttaagttttt--------atcat-----ttgat-cagttgatcaaaaag----------aaaaatttcgaaattt-------------------tga--aggaaactAC---TAATATTGTTTGAAACTGTTCATTTGATG
i caeRem4.Crem_Contig0 C 0 I 69
s caeSp111.Scaffold630 5838923 149 + 20921866 GTTTCATATAGT-----------------------GTGGAATAAAATT---GTCATCCATCTA------ATCAAATCAATTGTCACCAC------ACATCAGTTTTT--------CATATGGGAATTAACATAGTTTTgcaaaata----------caattttt--gaattttgt-----------ttctatcattagaaaac------tgaagattttcaaag--------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2116033 194 +  4147112 ATTGATTTCAGTTCGAATGAATGAGTGTAATTACAatggatttgaatttcagtcaTGCACTTATC--AGAACTGATAAATGCAGACtgcgaaaaaatatgatttttt--------ctaataacgataaaa-------ttcaaaataggaTCATCGCCAATGTTTAAGAatctatt-----------ttttatga--aaaagattttttatggaaagatttgaaa--------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I

a score=-3442.000000
s ce10.chrX            3742805 48 + 17718866 AATTA--------ATTAGAATTGCTCTTATTTTCTTTATA-TGTAGACTA----------------------------TTACCAA
s caeSp111.Scaffold630 5839072 38 + 20921866 aattt---------cttGTACTATTGAAATCG---taata-caaaaattg----------------------------------a
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2116227 85 +  4147112 tatttgtttgtATACTTGTACAGTTCAAAACGCCTTAGTAtcgaaaactgtgaaaaatgaatgtattTTCATCTTATTTTGCCAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I
e caeRem4.Crem_Contig0  842416 69 -  4500979 I

a score=-20235.000000
s ce10.chrX            3742853 155 + 17718866 -CTTAAG-----TTGAGTTTC----AGTTCGTGCATGAATAA-----GTAAACTTAAAGAATTAAAGAAAAAGTAGCAACAATGGAGA-------AATCTACCACTCCTATGGTG-TCTAAATGA--------------AACAATATG-AATTTTATTTTA--AATTTGGAAAGTTTTATATTTTGTTTCCAAAA--
s caeRem4.Crem_Contig0  842485 163 -  4500979 -CTAAAA-----TTAATATACAGGTAACTTGT-CaagaacaaaaatcaaaattcgaaaacattG---------------CAATGAAAGT------AAATATGCACTTGTTGGCTGTTTCCAATAGAAACTTTTGTTAACAGAACCAGA-GTCTTCAAGCTACCAATC-----AATCTCAAATCCTATCCCAAAAGTA
i caeRem4.Crem_Contig0 I 69 C 0
s caeSp111.Scaffold630 5839110 116 + 20921866 tCTAAAA-----TTACGTTTCGT--GGTTT------AAATGG---------------AATACTA---------TATCT-----------------AAAATTTTACGTTTAATACGATTCAATCGAAagac---------aaaaatcga-aatctcacaata--aa-------------atatttttgttcctATA--
i caeSp111.Scaffold630 C 0 I 1
s caePb3.Scfld02_0     2116312 166 +  4147112 TCGAACAGTTGCTCACGTTTCACCAAATTT------TAACAAA----GAAATTTCTCAATATTA-------GTTGCcttctttgaaaatccaggaaaactttttcttctggagtAATTTTAGTTATAGGCTGGATG---GAACACGGATATTTTCATACTA--GAT-------GCCTGAAATCttttctcgaaaa--
i caePb3.Scfld02_0     C 0 I 45
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I

a score=-2093.000000
s ce10.chrX            3743008 19 + 17718866 -----ATCGTTACTCCGTTGTTGC---
s caeRem4.Crem_Contig0  842648 25 -  4500979 --CTCATTACCAAGAATCTATTGTGTA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5839227 19 + 20921866 AACTCA-----ACGCACTTGCTGA---
i caeSp111.Scaffold630 I 1 I 15
e caePb3.Scfld02_0     2116478 45 +  4147112 I
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I

a score=-17520.000000
s ce10.chrX            3743027 127 + 17718866 CAAATTTACAACTATGGTTTGTAGTGAAATCTGAGGAAATATTGTTTATTAAA-AAAT-AAC---AAAA-ACATTTGCGAG-----TGGAACTAGCTATTAAAAAAATGTAATTCA--AATTCGAAGTT------------------------------CAAAA--------TAAAAG-
s caeRem4.Crem_Contig0  842673 111 -  4500979 -TGGATTATGATTC-----------------------ACTACTATCGACAGGA-ATATAAAC---ACAT-GCACTTTTACATaatggaaaacttttttgaaagtgttgAGAACATA--TGTCTGGAATT----------------------------CGTAAAA--------TGAAAG-
i caeRem4.Crem_Contig0 C 0 I 22
s caeSp111.Scaffold630 5839261 153 + 20921866 TAGAATTAAGGCAACAG--------------gtaaaaacaattattgaTGGAG-AAATCAACCGTGACtgatatttttatat----taagACTTGCTTCAA----TACATAACAGATTTGTTCTAAGTTTCCGATCCCTTG-ACAAGGAAATTCAtactcaaaa-atgaat-tcaaatg
i caeSp111.Scaffold630 I 15 C 0
s caePb3.Scfld02_0     2116523 145 +  4147112 TAAGTACACGACAAAGG--------------TGAAAGGCAATAtttgataaaataaatttatCAAATCT-AGATTTTCCCA-----AGAGACTTGAT------------TAACAAA--TGCTCAAAGTTGTGTCACTATCGTACATAAACATGCCGACTTGAAACCCGAatgtgaaaag
i caePb3.Scfld02_0     I 45 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I

a score=-2757.000000
s ce10.chrX            3743154 30 + 17718866 TAGTTGTAAGAAAAGTAACCTGTCACAACT-----------
s caeSp111.Scaffold630 5839414  9 + 20921866 taTTTCTAG--------------------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2116668 33 +  4147112 tttttccaataa--------ttttacATCTTTATGGGAGGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I
e caeRem4.Crem_Contig0  842784 22 -  4500979 I

a score=-124.000000
s ce10.chrX            3743184 6 + 17718866 ATTTG-A
s caeRem4.Crem_Contig0  842806 7 -  4500979 GTctgga
i caeRem4.Crem_Contig0 I 22 C 0
s caeSp111.Scaffold630 5839423 5 + 20921866 GTTCG--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2116701 7 +  4147112 GTTTGGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  138560 397 -   152914 I
e cb4.chrX             8891599 1130 + 21540570 I

a score=-60.000000
s ce10.chrX            3743190 16 + 17718866 AATAACTAAAAT-------TGAA
s caeRem4.Crem_Contig0  842813 13 -  4500979 aa---cggaaaa-------aaaa
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 5839428 16 + 20921866 AATACCTGAAGA-------TGAA
i caeSp111.Scaffold630 C 0 I 7
s caePb3.Scfld02_0     2116708 23 +  4147112 AACGCCGGATGAATTGCTTTGAA
i caePb3.Scfld02_0     C 0 I 7
s caeJap4.Scaffold1521  138957 16 -   152914 AATAACGCAAAT-------TATA
i caeJap4.Scaffold1521 I 397 C 0
e cb4.chrX             8891599 1130 + 21540570 I

a score=79497.000000
s ce10.chrX            3743206 146 + 17718866 AAAAGTTTAT-CT----TCTGCGGTAA--GCGGATGAGC------AACTTTGCAA---CAAATCG-TTTGATTGACA-CCATTCAGCTGCTCGTCATATTATTGAACTAAGTGACTCCTCA-ATACTCATTCTTCTA-----GT-GTCTTGTAATCC----------GGAAGACATATTGA
s cb4.chrX             8892729 161 + 21540570 AAAAGATTAT-CTAAACGCTGCGGTTAGCCCGGATGAGC------AACTTCGCAA---CAACTCGTTTTGATTGACA-CCATTCAGCTGCTCGTCATATTATTGAACTAAGTGACTCTTCACAAACCTATTGTCCTAGGTGCCA-ACCCAATAATCCC--------GGAAGGCATGAATGC
i cb4.chrX             I 1130 I 1
s caeRem4.Crem_Contig0  842828 153 -  4500979 aaaagattgtGTTAAAAGCTGCGGTTG--CCGGATGAGT------TACTTCGCAA---CAACTCG-GTTGATTGACA--GATTCACTGGCTCGTCATATTATTGAACAAAGTGACTCTTCA-ATACTCATTGTTCTA--CGATT-ATCTTGTAATCC----------GAAAGGTGGAATGA
i caeRem4.Crem_Contig0 I 2 I 4
s caeSp111.Scaffold630 5839451 153 + 20921866 AGTAAATATT-TTAAACGTTGCGGTTG--CCGGATGAGC------AACTTCGCAA---CAACCCG-TTTGATTGACA-CCATTCAGTTGCTCGTCATATTATTGAACAAAGCGACTCTTCA-CCTCTCGTTGTCCAA--CGGTC-ATCATCTAATCT----------GGAAAGCGTATTGA
i caeSp111.Scaffold630 I 7 I 27
s caePb3.Scfld02_0     2116738 154 +  4147112 ACTAAATTGT-TTAAAGCTTGCGGTTG--CCGGATGAGC------AACTTCGCAA---CAACTCG-GTTGATTGACA-CCATTCAGTTGCTCGTCATATTATTGAACAAAGTGACTCTTCA-CTTCTCATTGTCCAA--GGGTCAATCATGTAATCC----------GGAAGGCACATTAA
i caePb3.Scfld02_0     I 7 C 0
s caeJap4.Scaffold1521  138973 162 -   152914 ----ATTTGT-TAAACAAGCGTGGTTA-----GGTGAGCCTCGTTAACTTTGCGACTTCCACTT--TTTGATTGACATTCATTCAGCTGCTCGTCACATTATTGAAGTGAGAGACTCTTCAACCTCTTTGTTTCCTA--CTGTT-GCCTGTTAATCTTCATTCCCGAGACAGGAAGA----
i caeJap4.Scaffold1521 C 0 C 0

a score=2442.000000
s ce10.chrX            3743352 28 + 17718866 GACTATAATAGCAGGTGG-----------TTTTTAAGAG
s cb4.chrX             8892891 25 + 21540570 ---TATAAAGACAGATGA-----------CGTTTGACAG
i cb4.chrX             I 1 I 1188
s caeRem4.Crem_Contig0  842985 39 -  4500979 atttttgacaaaaggTGAACTGACACTGTTTTTTGACAC
i caeRem4.Crem_Contig0 I 4 I 20
s caePb3.Scfld02_0     2116892 27 +  4147112 GACTGTAATGACAGGTGG------------TTTCAAGAG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  139135 29 -   152914 GACTGAAACAGCAGGTGG--------ATTTATTTGAG--
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5839604 27 + 20921866 I

a score=2328.000000
s ce10.chrX            3743380 7 + 17718866 AGGGATC
s caeRem4.Crem_Contig0  843044 7 -  4500979 TCGGATC
i caeRem4.Crem_Contig0 I 20 C 0
s caePb3.Scfld02_0     2116919 7 +  4147112 AGGGATC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  139164 7 -   152914 AGGAATC
i caeJap4.Scaffold1521 C 0 I 1379
e cb4.chrX             8892916 1188 + 21540570 I
e caeSp111.Scaffold630 5839604 27 + 20921866 I

a score=-678.000000
s ce10.chrX            3743387 15 + 17718866 AATATTGTGAATGCA--
s caeRem4.Crem_Contig0  843051 17 -  4500979 AATATGTTGAACGACAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2116926 11 +  4147112 AACATGTTATG------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeSp111.Scaffold630 5839604 27 + 20921866 I

a score=-41156.000000
s ce10.chrX            3743402 226 + 17718866 TGGTT-TGAAAAGGGTAATTACAATACGATTGTT-------TTCATGCAGAGGTGAGACACGTATTAA--------------------------------------------------TAGAATGGTTGAACATTAGCTA-----------------CGTAAAAT-TAAATACAATTTCTACTTTTGCTACATTTTT--------TATTGAAAAT----------------GTTTCGGA-----GATTCAAT----TGAGTAATTTACAGCTTTGGCTAACAAAAAATTGTTGAGAAAGTAAATGATTGAAATCTCATAA------AATATTT------CCAACTGA---------------------
s caeRem4.Crem_Contig0  843068 231 -  4500979 TGGCTATGGGAAGA---------TTACGGATATG-----------------AGTTGAATTCATTCCAACGTGAGTTAGTAGG------------------------------------TTggtcaatttcaaaacaagcA-----------------TATTAATTATGAAttcacattttatt----ttaaGATTCCTGTGTTATCGTGGTCAAACTGTCAGAGAAAAGTTATCTTTGA-----TATCTaactccaaaaattgttta---------cgGATA---ACTTGTA----------GAAGTGTGTATTTCGTGGGCGTAACAAATTC------GCGACTTA---------------------
i caeRem4.Crem_Contig0 C 0 I 35
s caeSp111.Scaffold630 5839631 149 + 20921866 tagtt-tcaaaaga-----------acTATTGTT-----------------TGTGA--------------------------------------------------------TTATGCTCGATTTGTTGCTCAGTTACAA-----------------Tgttcttt-tgaa-----------------tgaagatatT----------TCGACATG------------------TTGTGAACGCTCTTCTAAT------------------------TTGGTA--------------------GCGAAGTATTCTTTGTGt------caaattt-----------tcatgaaacggt----------ga
i caeSp111.Scaffold630 I 27 C 0
s caePb3.Scfld02_0     2116937 333 +  4147112 TTGTT-TGAGAACA---------ATACAGTTGTTCTAATCCTCAAGATAGGTGTGAAA--CATTTCATCTAAggctttgagaaaaaacagggGTTTTTAGgcgttaaaatttttttttccaatcaagtTCTTTCTTATAGGTGTTCTCTTCATTGTTTGTTACTT-TgaatttgtgttgttttcttcTAAAGATTTT--------CATGGACACGGTAGCAAACAAAg---cttcttgaaaactttttgaattcc-cataTTGTTTAC--CAGTAGTTCGTAAGAAGTTGTG--TACCGTGGGcgtaatatattttttgg------cttATTTGTCGCGGCACCTCATTAGACTTTATCTGCACCAAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I

a score=551.000000
s ce10.chrX            3743628 4 + 17718866 TCAA
s caeSp111.Scaffold630 5839780 4 + 20921866 taaa
i caeSp111.Scaffold630 C 0 I 112
s caePb3.Scfld02_0     2117270 4 +  4147112 TTAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeRem4.Crem_Contig0  843299 35 -  4500979 I

a score=-325.000000
s ce10.chrX            3743632 11 + 17718866 GGACCAATCCG
s caePb3.Scfld02_0     2117274  9 +  4147112 AATCTAGT--G
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeSp111.Scaffold630 5839784 112 + 20921866 I
e caeRem4.Crem_Contig0  843299 35 -  4500979 I

a score=-8065.000000
s ce10.chrX            3743643 108 + 17718866 ----------------CTGAAAATATCTCAGACAGC-----------TGGATAATCAG-----------------------------GCGAAAATATTTTTTT-----------------GACGA------ACGCGCTCACA--CATGAAAAATGAGATCAGGAGTCAATAATTTACATGAAACAT---TAC
s caeRem4.Crem_Contig0  843334  84 -  4500979 -----------ctgaatTGAA---ATCAAGTACAGT-----------GAAATACACGA-----------------------------CCAAAACTTTTGGTTT-----------------ACCGA---------TGGTCGCA-----------TATTAT--------AATAATTTATATC---cat------
i caeRem4.Crem_Contig0 I 35 C 0
s caePb3.Scfld02_0     2117283 186 +  4147112 CAGAGAAAAGTGCAAACTGGA---ATTGAGAGAAGTTTGCTCTTAGGAAAAGGTTCGAATTGAGGAGTTGGATGAAAAGTCGTTTCTTcgaaaatgtagttttttttgtaagatcaaggaatcgaaaaaaaaagtgttcgcAAGTATGGAAGCTTTTACTGAGAACGGATAATTTGGATCAGACATATT---
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeSp111.Scaffold630 5839784 112 + 20921866 I

a score=-657.000000
s ce10.chrX            3743751 32 + 17718866 CAAAAATGAAAAAAAAACAGAGTTTTAACATT
s caeRem4.Crem_Contig0  843418 32 -  4500979 ttaaaacagaaaaacaaggaatcttcaaaatt
i caeRem4.Crem_Contig0 C 0 I 156
s caeSp111.Scaffold630 5839896 27 + 20921866 CCGAATTAAAAGGACAATAAAGTGCAA-----
i caeSp111.Scaffold630 I 112 C 0
s caePb3.Scfld02_0     2117470 27 +  4147112 GTGATTCAAGAAGAGATTAGCGTGTTG-----
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I

a score=-5371.000000
s ce10.chrX            3743783 90 + 17718866 TTAAAAGACTTGCAAGTCAAAGCTTTTTTTAAAgcgccagtggtgatctaaatg-cacttacaacgattcagaatgactgaata-------tcatgat---
s caeSp111.Scaffold630 5839923 69 + 20921866 ------------CAAATGAAAGTTTGAGATAA-------------GTTAGCATA-GAATTGTGAC-ATTCTG--TGACTGAACACTGTTGTTAATAAT---
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2117497 63 +  4147112 -----------------GAAACATTATAACCA-------------ATACACATAGGGATTA-----ATTCTG---AACAGACAAGAATCACTGGAAATCTA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeRem4.Crem_Contig0  843450 156 -  4500979 I

a score=-7066.000000
s ce10.chrX            3743873 56 + 17718866 aaaca-tccttcaaaaaagttatactatgaattttg---------gttatttaggcaccaaaggag---------
s caeRem4.Crem_Contig0  843606 73 -  4500979 AAACACTCCTCCAATACAC--ATGAGATTAAAAATGAACAGACAAGAACGctggaaatcagaaaactaaaaataa
i caeRem4.Crem_Contig0 I 156 C 0
s caeSp111.Scaffold630 5839992 58 + 20921866 AAATA-TCAAGCGCTGTAG--AACCTATTAGAATCG--------AATTTTCTTGGGAACAGCAGGGAGA------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2117560 55 +  4147112 AAATG-Tcctttattctca--aaaatctgaagattG---------GTCTGCTTCTGA--AGCAAAGAAA------
i caePb3.Scfld02_0     C 0 I 48
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I

a score=-4018.000000
s ce10.chrX            3743929 52 + 17718866 ---tagttttaa--acactatccccactggcggtactccaccttAAAA----TGAATTCTG-
s caeRem4.Crem_Contig0  843679 42 -  4500979 ---tggTTTAAA-------GTGTTAACGGGAAGTTTTTCATCA---------CAGATTCTG-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5840050 62 + 20921866 TAATGAATAAGATACTCctgattgaatgaaaaacttaaAATCAAATGAGCATTAAAGTTCGA
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2117615 48 +  4147112 I
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I

a score=-16874.000000
s ce10.chrX            3743981 768 + 17718866  
s caeRem4.Crem_Contig0  843721 522 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5840112 494 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2117663 748 +  4147112  
i caePb3.Scfld02_0     I 48 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I

a score=-4646.000000
s ce10.chrX            3744749 70 + 17718866 TTTTCAAATTAACCAAAGTTTTTGTAGACACAACTACATTTTAAAATTAAATTGATTGTAGCAAATCAAC
s caeRem4.Crem_Contig0  844243 29 -  4500979 ---ttttatt--------------tcgaatttttcagttgtgccaa------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2118411 58 +  4147112 ---tcaaaataaacaa-----TGATCGAAACTATTACCGGTACAAATCACAGTGTCTCAGGTGGTT----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8892916 1188 + 21540570 I
e caeSp111.Scaffold630 5840606  0 + 20921866 C

a score=-3244.000000
s ce10.chrX            3744819 32 + 17718866 CCCAACCAATCAAAATTGTG----TAATATTATTGC
s cb4.chrX             8894104 30 + 21540570 ctcaa-caaaaaaaaatttg----ccac-tTGTTGC
i cb4.chrX             I 1188 C 0
s caeRem4.Crem_Contig0  844272 15 -  4500979 ----------aaaacatttg-----------attaC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2118469 26 +  4147112 ---------TCAAACACTTGTGTTTGAC-ATGTTAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e caeSp111.Scaffold630 5840606  0 + 20921866 C

a score=10479.000000
s ce10.chrX            3744851 126 + 17718866 GCAACTGTTT----TTCTCAATA-AGCGTAAATTAATTAACAGTC------AGTAATGTCGTAAAACTTCTGGTG-ATCCTGCTGCACC-----AAATAAAACAGCCGTCTAGAACGAAGGTATCATAAATT--GTTTTATGACA--
s cb4.chrX             8894134 113 + 21540570 GCAATTGCTG----GTACCTCATCATTGTAA----ATtagcaa----ctacagt--aaccataaAACCTCTGGCA--CTCCTCTCCACT--------AAAAACAGCCGTGCACAA--------TTGTAAATTAGGGTTTATGGAG--
i cb4.chrX             C 0 I 70
s caeRem4.Crem_Contig0  844287 136 -  4500979 ACAACTGGTG----CAACCACCT-ATCATAAATTCATTAGCAATC-TCCATGGTGAGACCGTAAACCTTCTGGGA--CACTGTTGTACTTGAAGAAACAGAACAGGCGTGTGCAACACAAGTGTTGTAAATTA-GGTTTATGGAC--
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5840606 123 + 20921866 GCAACTGTTG----TTACCAACC-ATCGTAAATTAAT----GAGTCTCTACAGTAATATTGTAAAACTAATGGCA-TCACCATTCTGCA----------AAACAGGCGTTCAGAAAATG---ATCGTAAATTA-GTTTTATGGAGTG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2118495 128 +  4147112 GCAACTGTTACTTCTTCTCACTC-ATTATAAATTAATTACCGAGT-TGTACAAAACTGTTGTAAAACTTCTGGCACCCACCACCCTCCT----------GGACA-----TCAAGAAATA-GTGTCATAAATTA-GTTTTATGAAGTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I

a score=-3837.000000
s ce10.chrX            3744977 60 + 17718866 ---CATCATTGCTACTGTGTTTA-----ACTTTATAGACTGTGTATAT---CTGTGGCATTATTTAGAA---------AG
s caeRem4.Crem_Contig0  844424 53 -  4500979 GATCTTGGTTACCATCCCTCCGG-----ATTTGAATG-------AAACCTACTGTGACACTGTTT---------------
i caeRem4.Crem_Contig0 I 1 C 0
s caeSp111.Scaffold630 5840729 64 + 20921866 AATCCTGGTCACCAGTATCTTGA----CACTCGCAAG-------ATTT---GTGAGACATCATTTAAACCAACAATGG--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2118623 59 +  4147112 AATCTTGACCACCATTATTCCGATTTGTATTTGAATA-------GTAC---CGGTGgcattttgaaaag-----------
i caePb3.Scfld02_0     C 0 I 15
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8894247 70 + 21540570 I

a score=136.000000
s ce10.chrX            3745037 6 + 17718866 CAATTT
s caeSp111.Scaffold630 5840793 6 + 20921866 CATtgt
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2118682 15 +  4147112 I
e caeJap4.Scaffold1521  139171 1379 -   152914 I
e cb4.chrX             8894247 70 + 21540570 I
e caeRem4.Crem_Contig0  844477 0 -  4500979 C

a score=-6040.000000
s ce10.chrX            3745043 45 + 17718866 AAAAAAAAAACTTTATGTGGGTTTTTTTTT-TCATATGATATCTTT
s cb4.chrX             8894317 36 + 21540570 AAACAAAAAACTCTGT-----TTTGCACTCGTacaatgaaa-----
i cb4.chrX             I 70 C 0
s caeRem4.Crem_Contig0  844477 34 -  4500979 -TTccgacagtttttt-----tttgtgatt-tgaatttaaa-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5840799 21 + 20921866 ---caaaaa--------------tggaa---tggaatCAAA-----
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2118682 15 +  4147112 I
e caeJap4.Scaffold1521  139171 1379 -   152914 I

a score=7222.000000
s ce10.chrX            3745088 30 + 17718866 GAATTCACGCCG---------TCAAG------TCAAACTCACTGA
s cb4.chrX             8894353 45 + 21540570 aatatcacaTTGAAAGATGCCGCAAGTCCCTCAAAAACTCATTGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  844511 25 -  4500979 acGTTCACGCCG--------------------ACAAACTCTTTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5840820 25 + 20921866 GTGTTCATGCCG--------------------ACAAACTCATTGA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2118697 25 +  4147112 GCATTTGTGCCG--------------------ACAAACTCATTGA
i caePb3.Scfld02_0     I 15 C 0
e caeJap4.Scaffold1521  139171 1379 -   152914 I

a score=125289.000000
s ce10.chrX            3745118 178 + 17718866 ATTCCTTATACAAACTTGATGATTGAAGCGG---AAAAACAGTTATGTATCACATCATCATCATCATAATCC---AATGGATCCAACTTTATCG-GCGATCTTATGA--------GAA-----------AA--CTGCGTCTCTTTACTAGTTTTACTCTTTTCTCGGCTCGCCACAAAGAAAGTGCATACAAGTGTGAAATTGCCG
s cb4.chrX             8894398 167 + 21540570 ATGCCTTATACAAACTTGATGATTGAAGCGGAAGAAAAACGGTTATGTATCA---------CATCATAATCC-ATATTGGATCCAAGTTTATTGCGGTTTCTTTTAA-----GGAGGA-----------AC--CTGTCCATCTCC--------CGGCTCCCTCT---CCTTTCACAAAGAAAGTTCATACAAGTGTGAAATTGCCG
i cb4.chrX             C 0 I 3791
s caeRem4.Crem_Contig0  844536 177 -  4500979 ATTCCTTATACAAACTTGGTGATTGAAGCGG----AAAACGGTTATATACCA--------TTATAATAATCC---AATGGATCCAAGTTTATCG-GCAATCTCATAACATTTGAAGGA-----------AC--CTGTCTCTCTTCGACACCAACGTATTTCTCTCGGCTCCTCACAAAGAAAGTTCATACAAGTGTGAAATTGCCG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5840845 174 + 20921866 ATTCCTTATACAAACTTGATGATTCAAGCGG----AAAACGGTTATGTATCA-----------CTATAATCC---AATGGATCCAAGTTTATTG-GCGGTCTCATAACATTTGGATAG-----------AT--CTGCGTCTCTTGGTCAGTAACACTCTTTTCTCGGCTCCTTACAAAGAAAGTTCATACAAGTGTGAAATTGCCG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2118722 176 +  4147112 ATTCCTTATACAAACTTGATGATTCAAGCGG----AAAACGGTTATGTATCA-----------CCATAATTC---AATGAATCCAAGTTTATTG-GCGGTCTCATAACATTTGAACAG-----------GTGACTGCGTCTCTCCGTTACCCAACAACTTTCCTCGGCTCCTTACAAAGAAAGTTCATACAGGTGTGAAATTGCCG
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  140550 192 -   152914 ATACCTTATACAAACTTGATGATTGAAGCGG----AAAACGGTTATGTATCT-------ATCATCAAAATCGAAAAACCAATCCAACTTCATTG-GCGGTCTTATaacttttgaagaaaacttTATTGGAT--CTCCGTCTCTTTGAACCGTGCACTTTCTCCATTGCTTCTTTCAAGGAAAGTTCATACAAGTGTGAAATTGCCG
i caeJap4.Scaffold1521 I 1379 C 0

a score=10507.000000
s ce10.chrX            3745296 15 + 17718866 ATAAACGGACACAGC
s caeRem4.Crem_Contig0  844713 15 -  4500979 ATGAACGGACATGTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5841019 15 + 20921866 ATAAACGGACATAGC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2118898 15 +  4147112 ATAAACGGACACATC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  140742 15 -   152914 ATAAACGGACACCGC
i caeJap4.Scaffold1521 C 0 N 0
e cb4.chrX             8894565 3791 + 21540570 I

a score=179.000000
s ce10.chrX            3745311 186 + 17718866 ACC-GGTAAG----GTCTTATTGTC-----GTCGCGTTTTTTGAAATTTATTTTACCAATAATGGCTTAACGTTTGAGAGGCAAGTTGAAAATC-----AAAGAGTGAAGGGGGT-TTTGAATCAAAAACATCCATTAAAAAGTGTTTTGTGCAA-----------CAAAATATC----------CATGGCGGGCTCAT-----------------TAAATGAAATTATGTTTCTATTA-T
s caeRem4.Crem_Contig0  844728 203 -  4500979 TTCAACTAAG----GTCTCCATGTTTAGCAGTCGCTTATCCAGTCA--TATTTTACCAATAATGTGTT--TGATTTGAAGGCac---ggaaaga-----aaaaaccaaaaagggg-attgatttttaaacttaGTTTGAAATAGTGTGAAATAAGAGG--------AGAAATACA-----------TTAAAAGGTCTATACCGTCAcgttttaatgaaaatataatgtttcTATTAAAT--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5841034 191 + 20921866 ATC-AAtgaaagttgttttttggtATGGTAGTCGCTTATCCACTCA--AATTTCATCAATAATGAGG---AGAtccaaaagaga---gaaaatgaaatgaaagaatgaataGGGA-CTCCGTGTTTAAAATTAgtgcaaaaaat----------------------aaaaatgaaggattGCACACGCAGAATGCTCAT-----------------AAAATATAATTATGTTGGTCTTTT-
i caeSp111.Scaffold630 C 0 I 1807
s caePb3.Scfld02_0     2118913 194 +  4147112 ACT-ACTAAG----GTCTTCTTGTTTGGTAGTCGCTTATCCTCTC---AATTTCATCAATAATGTGAT--AGTttcgaatgaga----aaaatg-------agaat--atagGGATTTTCGTGATGAAAATTAGTGCAAAAGATGTTGAGAGCAGAGCTTTGTATAAAAAATGAA-----CCGCGCaaaaaaaGctaat-----------------gaaataaaattatgtTGTCATTT--
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             8894565 3791 + 21540570 I

a score=-1326.000000
s ce10.chrX            3745497 56 + 17718866 TTTGAGCAGACTTAAAGTGTGCAAAAGGTGGAAAAAAATTTCTGTTTAAATGGGCA-------------------
s caeRem4.Crem_Contig0  844931 65 -  4500979 ----------TTTCACAAGAGCAACATCTAAGAAACCAATgctatttagaaaaaaagtgctTGAAACGCATGAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2119107 44 +  4147112 -----------CCTGCGTAAgcaacatttgaaaaa-aactattctctaaaaagaca-------------------
i caePb3.Scfld02_0     C 0 I 1687
e cb4.chrX             8894565 3791 + 21540570 I
e caeSp111.Scaffold630 5841225 1807 + 20921866 I

a score=2011.000000
s ce10.chrX            3745553 120 + 17718866 TGTATTTAAGGAAAAGTTATTAATATGCTGTTTCAGTTCTATAAAGGTGTAATCCCTGAAATA-AATCCATTTTTGATGGGATTATCAAAGTATTTTTATTCCATGTTTTGATAGAAATAA
s caeRem4.Crem_Contig0  844996 112 -  4500979 AAGATAGAACGGGAAGTAAATGA--------TCCAGCTCCTCATAAGAATGAGTGTAGAGATATAATCTATTTATGATTGgattataaaagt-tttttctcgcaAATTGAGATATAAATAA
i caeRem4.Crem_Contig0 C 0 I 1123
e caePb3.Scfld02_0     2119151 1687 +  4147112 I
e cb4.chrX             8894565 3791 + 21540570 I
e caeSp111.Scaffold630 5841225 1807 + 20921866 I

a score=0.000000
s ce10.chrX            3745673 26808 + 17718866  
e caePb3.Scfld02_0     2119151  1687 +  4147112 I
e cb4.chrX             8894565  3791 + 21540570 I
e caeSp111.Scaffold630 5841225  1807 + 20921866 I
e caeRem4.Crem_Contig0  845108  1123 -  4500979 I

a score=218.000000
s ce10.chrX            3772481 25 + 17718866 ttattattCCGTCAATAT-CATAATG
s caeSp111.Scaffold630 5843032 26 + 20921866 ttatttgttGCTCAgtatatatattt
i caeSp111.Scaffold630 I 1807 C 0
e caePb3.Scfld02_0     2119151 1687 +  4147112 I
e cb4.chrX             8894565 3791 + 21540570 I
e caeRem4.Crem_Contig0  845108 1123 -  4500979 I

a score=2438.000000
s ce10.chrX            3772506 69 + 17718866 TTCTCACATAACTTATTAAATACACTAATATAATAAGT-------AACTTTCACGCAATCACCATATAATTTTAGG
s caeSp111.Scaffold630 5843058 71 + 20921866 ttctcacaTAAATTACTCCCAACACAAATTGAATCACC-----CAATCTGCAACGTAAGATTGGTCCAACTCAAGC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2120838 74 +  4147112 ttctcacacactttactCTCAGCGCAAATTAGATAAACCTTGACGCACTGCAAAGTAGGTTCCATACAACTCC--T
i caePb3.Scfld02_0     I 1687 C 0
e cb4.chrX             8894565 3791 + 21540570 I
e caeRem4.Crem_Contig0  845108 1123 -  4500979 I

a score=600.000000
s ce10.chrX             3772575 1 + 17718866 C
s caeSp111.Scaffold630  5843129 1 + 20921866 C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2120912 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    2050 1 -   343467 C
i caeJap4.Scaffold18142 N 0 C 0
e cb4.chrX              8894565 3791 + 21540570 I
e caeRem4.Crem_Contig0   845108 1123 -  4500979 I

a score=109559.000000
s ce10.chrX             3772576 603 + 17718866  
s cb4.chrX              8898356 632 + 21540570  
i cb4.chrX              I 3791 I 116
s caeRem4.Crem_Contig0   846231 575 -  4500979  
i caeRem4.Crem_Contig0  I 1123 I 3
s caeSp111.Scaffold630  5843130 563 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2120913 562 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142    2051 566 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-18279.000000
s ce10.chrX             3773179 109 + 17718866 CATTTC-----ATTCGACGCGCC-ATATCCGAATGGGTGTTTGTTTTTTGCA---------CTACAATTAGG----TATACCTTGAAACA--------------TTAT--AACAAAAAAGTCACCGAAGTAAA-----------TTTCTCCCCGA------
s caeRem4.Crem_Contig0   846809 119 -  4500979 ACTCTCGACGACCCCGACGCAAT-ACAT-----------------GTTCTCAACCT----TTTTCTATCCGA----TACTTTTTGGAAAAGCGCG-TTCTCGCTTTAT-GAACAAAAACAACA---GGGTGAAAACGCG---GCTT--TTCCAAG------
i caeRem4.Crem_Contig0  I 3 I 8
s caeSp111.Scaffold630  5843694 124 + 20921866 tctttt-----tctctgcgcaGTCCCATCC------------ACCCTTTCCAACCT----TTTCCAATGCga----tactttttaa-aaagcgCG-TTCTCGCTTCAC-GAACAGAAACAACAAAAGGGGAAAACAGTG---ACTGTATTCCGAA------
i caeSp111.Scaffold630  I 1 I 9
s caePb3.Scfld02_0      2121476 120 +  4147112 tctctc-----tgtCCGCGCAAT-CCATCC------------TTCTCTTACAacct----tctcaaa----------actttttaacaaagcgcattttttattttatggaacaaaaacaacaatttaggaaaaaactg---ACTGTATTCTAAA------
i caePb3.Scfld02_0      I 1 I 6
s caeJap4.Scaffold18142    2617 106 -   343467 -----------------CACGTT-ATTTCC---------------TTTTCCAAACCAAAgtttgagacaaaaaaattaacttt-------------tttttgtttgac--aaTGAGGAAAAGA-------GAAAACGCGCAAGCTTCAGATTAAAATAAAT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8898988 116 + 21540570 I

a score=149020.000000
s ce10.chrX             3773288 215 + 17718866 GTATGTTTTGCTTGCAATCAATGTCTTCCGCGC-TCGAGATAGGCGACCATAGCTTG-CTTCGTCCACCCAAAAACCTGTTCG-AACTAGCC---ACTTCCCCGTCCGCAAGT--------CGAATTTTCT-------------TCTTTCATCG----CTATCCT---------------ACACGCGTTTCGCTGTTTCTCACATTCAAATCCGCT-----TTTCTCTTCTTTTCCCTTTTTTGCTG-----TTAGTGA------------GATTTTAGATTT
s cb4.chrX              8899104 217 + 21540570 ATATGTCT---------------TCTTCCGCGC-TCGAGATAGCCGACCATAGCTTGTCTT-GTCCACTC-AAAACCTGTTCGCAACTAGCCGCTGCTTCCCTGTCC----GT--------Cgaattttccttcttctttcttgtcttttttgg----TTATCCCAACACACACAGACATACACGCGTTTCGCTGTTTCTCACATCCAAATCCGCT-----TTTCTCTCTACtacttttcttttc---------------------------attttggaCTG
i cb4.chrX              I 116 C 0
s caeRem4.Crem_Contig0   846936 197 -  4500979 GTATGTTTTTCATGCAATCAATGTCTTCCGCGC-TCGAGATAGGCGACCATAGCTTG-CTT-GTCCACTC-AAAACCTGTTCG-AACTAGCC---GCTTCCCTGTCCGC-TGt--------cgaattttct-------------tctttcgtgG----CTATCCC----------------CACGCGTTTCGCTGTTTCTCACATTCAAATCcgct-----tttctcttt----ctcttttttct---------------------------gcttcagaTTG
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5843827 197 + 20921866 GTATGTTTTGCATGCAATCAATGTCTTCCGCGC-TCGAGATAGGCGACCATAGCTTG-CTT-GTCCACTC-AAAACCTGTTCG-AACTAGCC---GCTTCCCTGTCCAC-AGt--------cgaaatttct-------------cttttcttcg----ctATCCC----------------CACGCGTTTCGCTGTTTCTCACATTCAAATCcgct-----tttctcttt----tcttttttttc---------------------------gtctgaCATTG
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2121602 197 +  4147112 GTATGTTTTGTAGGAAATCAATGTCTTCCGCGCTTCGAGATAGGCGACCATAGCTTG-CTT-GTCCACTC-AGAACCTGTTCG-AACTAGCC---GCTTCCCTGTCCACAAGT--------cgaattttct-------------atttccttCG----CTATCCC----------------CACGCGTTTCGCTGTTTCTCACATTCAAATCCGct-----tttctcttt----cccttttct-----------------------------gTCTGAGATTT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142    2723 233 -   343467 -------------GCAATCAATGTTTTCTGCGTCTCGAGATAGTCGACCATAGCTTG-CTTTGACCACTC-AAAACCTGTTCG-AACTAGCT---GCTTCCCCGTCCGC--GTCGTCGCTgcgaatttctt-------------tttttttctgctttctaTCCA----------------CACGCGTTTCCTCGTTTCTCACATCCCAATCCGcttcttatttctcatcttctccctttccttttaagctttttgctatctcttgtttttgattttagaTTT
i caeJap4.Scaffold18142 C 0 I 56

a score=-15385.000000
s ce10.chrX             3773503 49 + 17718866 TTAGAAAACCCTTTTTGGTGACGTCTGA-ACTATATACACTATCATAACA
s cb4.chrX              8899321 18 + 21540570 AT---------------------TCTGTAACTaac-----------aaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   847133 41 -  4500979 ATTTCTTC------AAGATGACGTCTGT-ACTAActaaa--accaaaaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5844024 38 + 20921866 AGATCTTCTTATTCATGATGACATGAgtgatttc------------agag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2121799 47 +  4147112 CCTTCTTCGTAGTTGACATCTCCttactgattttc-aaa--actaagaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    2956 56 -   343467 I

a score=334.000000
s ce10.chrX             3773552  65 + 17718866 AAAGTAAAAGTGTGAC--------------GGATTTTTTGTCATAAGTTTAATTT-------------CTGTCTAAT----------------------AGTGTA------------------------------------TTCATATCT
s cb4.chrX              8899339  67 + 21540570 aaagagaaagtgtGAC----TCAA-------AATTTATCATCGTATCATCAC--------------CGTCGTCCTAT----------------------TTTGTA------------------------------------TTCCAGTTT
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   847174  79 -  4500979 aaaggGAAAGTGTGAC----TTGAGAGTTTCAGTTTATCA-CATATCAGCCCACAA--------TGTGTCGCTTGAT----------------------TTGGTA------------------------------------TTCATGTTT
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold630  5844062  73 + 20921866 aaagagaaagtgtGAC----TTGA------CAGTTTATCATCCCACGGTTTTTAT---------TTGATAGCCCTAT----------------------TTGATA------------------------------------TTCATGTTC
i caeSp111.Scaffold630  C 0 I 51
s caePb3.Scfld02_0      2121846  74 +  4147112 aaagagaaagtgtgaC----TTGG------AAGTTTATCAGCCCACGGTTTTCCCA--------TCGACATGCCTAC----------------------TTTATA------------------------------------TTCATGTTC
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold18142    3012 144 -   343467 aAAGAGAAAGTGTGACTCTTTTAG------CAGTTGATATGCGTATTTGATTTTAGATAGTGATGTTTCTTTCCCAtcaccagaaaaaaaaccaagcaGTTTATACTTTCTCCGCACGCTACCATCGCCTCCGCACTCTCCTtcatttct
i caeJap4.Scaffold18142 I 56 C 0

a score=-7209.000000
s ce10.chrX             3773617 42 + 17718866 TTCTTTAATCTTCAATTTTGAATAGGAGTTT------AAAACTATAAG
s cb4.chrX              8899423 39 + 21540570 tttctta---ttttttttgtgacgctcttct------tattccttctt
i cb4.chrX              I 17 I 16
s caeRem4.Crem_Contig0   847272 42 -  4500979 CTTCTTATGCTTTCTTTTGCTTCTCCTTTCT------AAAACTCCcac
i caeRem4.Crem_Contig0  I 19 I 11
s caePb3.Scfld02_0      2121956 31 +  4147112 ----------ttttgtttctttcttatttct------attgatttca-
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18142    3156 39 -   343467 -tccttt---ttcttttaataTCGATTGTCTCTAATAAATAAT-----
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5844135 51 + 20921866 I

a score=211110.000000
s ce10.chrX             3773659 292 + 17718866 CTATTGGTTTTT------------TTGCAGGAGTGTTTATGCTATTCATCTTGGTAGTTATCTTGGCGTTCAGCGCTGGAGGAAGCTCTGGCGAATCACTATACGACAAAGACGATCCGATTCTCGAACTCGATGTAGATACATTCAGTGCAGCTATCTATGGATCCGTATGT-------TTTTTCCCTTGAAAAAC---TCCAAA-ATAAACTGAAAGCT------TTTCAGAAAAAAGCACATTTCATCGAGTTCTACTCTTCATGGTGTGGTGCTTGCATCGGATATGCTCCAACGTTCAAAAAGTTCGCCAAGTAAG
s cb4.chrX              8899478 284 + 21540570 TTATCG------------------TTTCAGGAGTGTTTATGCTGTTCGTCTTGGTAGTTATCTTGGCGGTCAGTGCCGGACGGGGAAATGGGGAATCACTCTACGATAAAGACGATCCGATCCTCGAACTTGACGTCGACACGTTCAATCCAGCAATCTATGGAGTGGTGAGT-------CCGAATCCG--AATCAc---tcaaga-ataaaaaaatatct------tTCCAGAAAAAGGCACATTTCGTCGAATTCTACTCATCATGGTGTGGAGCTTGTATTGGATACGCACCTACGTTTAAGAAATTCGCGAAGTAAG
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   847325 282 -  4500979 -ta----------------------ttcagGAGTGCTTATGCTGTTCATCTTGGTGATTATCTTGGCATTCAGTGCCGGAAGAGGTAACAGTGAATCACTCTACGACAAAGACGATCCGATCCTCGAACTAGACGTCGATACATTTGGCCCCGCTATCTACGGATCTGTTAGT-------TTATCCTCT--CTTTACATTTTCCGA-GCAACGGTTGTTGT------TTTTAGAAGAAAGCGCATTTCGTCGAGTTTTACTCATCTTGGTGTGGCGCCTGTATTGGATATGCTcctactttcaaaaaattcgctaagtgag
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  5844186 296 + 20921866 ctattgatttttgtttc-------tttcaggAGTGTTTATGCTGTTCATCTTGGTGATTATCTTGGCGTTCAGCGCTGGAAGAGCAAACAGTGAATCTTTATACGATAAAAACGATCCGATCCTCGAACTCGATGTCGACACATTTAACCCAGCAATTTACGGAGTGGTCAGTaatctgaatattttgt--attcag---t-------tatcaaatctttt------tttcagaagaaagcTCATTTTGTCGAATTTTACTCATCATGGTGTGGAGCTTGTATCGGATATGCGCCAACATTCAAGAAGTTTGctaagtgag
i caeSp111.Scaffold630  I 51 C 0
s caePb3.Scfld02_0      2121987 288 +  4147112 -tattgg-----------------tttcAGGAGTGTTTATGCTGTTCATCTTGGTGGTTATCTTGGCGTTCAGCGCTGGACGAGGAAACAGTGAATCACTTTACGACAAAGACGATCCGATCCTCGAACTTGATGTCGACACGTTTGGCCCCGCAATCTATGGAGTGGTTAGTCAT----ATCTTCCTT--GTTGGA---TC------CATCAAACGTTCTtaatgatttcagaaaaaagcacATTTCGTCGAATTCTACTCATCTTGGTGTGGAGCCTGTATTGGATATGCGCCAACATTTAAGAAATTcgcaaagtgag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    3195 289 -   343467 --------------CTCACAGCCATTTCAGGGATTTTTATGCTGCTCGTTTGGGTGGTTATCTTGGCGTTTAGCGCTTCTCAGGGAGCCACAGAATCACTCTACGATAAAGGCGACTCGATACTCGAACTTGACGTCGACACATTTAATCCAGCTATTTACGGATCGGTGAGC-------TCGTTTTGT--GTTGGA---TAACTATttgaaaacatattt------tttcagaaaaaagctCATTTTATCGAATTCTACTCATCATGGTGTGGAGCTTGCATCGGATACGCCCCAACGTTTAAGAAATTCGCCAAGTAAG
i caeJap4.Scaffold18142 C 0 I 122

a score=964.000000
s ce10.chrX             3773951 2 + 17718866 TT
s cb4.chrX              8899762 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   847607 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5844482 2 + 20921866 tt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2122275 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 I 700
e caeJap4.Scaffold18142    3484 122 -   343467 I

a score=-825.000000
s ce10.chrX             3773953 5 + 17718866 CAGAT----
s cb4.chrX              8899764 5 + 21540570 ----TTTGT
i cb4.chrX              C 0 I 184
s caeRem4.Crem_Contig0   847609 5 -  4500979 ----tttat
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5844484 5 + 20921866 ----tttct
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2122277 700 +  4147112 I
e caeJap4.Scaffold18142    3484 122 -   343467 I

a score=-80.000000
s ce10.chrX             3773958 38 + 17718866 --------TAGCAAAATGGAATGCACATTGATAATATTTACATAGT
s caeRem4.Crem_Contig0   847622 36 -  4500979 ----TTC----CGAAAAGTTGTGGGCATAATT--TGTTTACACGAT
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5844489 41 + 20921866 tgatttcttaATGAAAA---ACGGATCTGATT--TGTTTACACGAT
i caeSp111.Scaffold630  C 0 I 47
e caePb3.Scfld02_0      2122277 700 +  4147112 I
e caeJap4.Scaffold18142    3484 122 -   343467 I
e cb4.chrX              8899769 184 + 21540570 I

a score=-521.000000
s ce10.chrX             3773996 23 + 17718866 -----------------GATTGCATGGCTTT---CATGCCGAC
s caeRem4.Crem_Contig0   847658 43 -  4500979 CAATCGtgtttgttttaaatttcGCAATTTTACATATATCGGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2122277 700 +  4147112 I
e caeJap4.Scaffold18142    3484 122 -   343467 I
e cb4.chrX              8899769 184 + 21540570 I
e caeSp111.Scaffold630  5844530 47 + 20921866 I

a score=-150.000000
s ce10.chrX             3774019 10 + 17718866 GATTTTTTTA
s caeRem4.Crem_Contig0   847701  5 -  4500979 CATTT-----
i caeRem4.Crem_Contig0  C 0 I 4
s caeJap4.Scaffold18142    3606 10 -   343467 aattttgctA
i caeJap4.Scaffold18142 I 122 C 0
e caePb3.Scfld02_0      2122277 700 +  4147112 I
e cb4.chrX              8899769 184 + 21540570 I
e caeSp111.Scaffold630  5844530 47 + 20921866 I

a score=-25609.000000
s ce10.chrX             3774029 143 + 17718866 ---AATCAAACA--AAAAACATT--CCGCAAAAACTTG---------------AAAA-------GGTTATATCTCGGTTCA------------------TTTTGAGTA----------ATGAAAAACTATAAACTATA----CAATTGAAA-------------------ATTGCATACTCAAA-----------------------TATATGTATAATA----------AAAAGTTCCACGATT----------TTTTCAATCCA
s caeRem4.Crem_Contig0   847710 250 -  4500979 ---GGCAGAAAA--GCAAATATT------GAAAGCAAAGGTAGATATCTAAGTAGACACTGGGAGGC---ATATCATAACAAACCAcataaaatagattttttaagCTGGACGATTGAGGGGAAGTCTTGAAATGGTAACAGATCTTGAAGGCTTACCATAGAGCTTACCATAAAATGTGTGAGAGAGATAGTTTTTGTAAGTTGATTTCACAACAAGAAAAGAAta--caaaactacaaaaatcgtaaagttaattttttttaaa
i caeRem4.Crem_Contig0  I 4 I 9
s caeSp111.Scaffold630  5844577 130 + 20921866 ---AATTGAACa--acaaatatt------gaaaatgaa---------------aaac-------ggc---------TAACA------------------TTTTGCGCt----------------------------------actttgaaa-------------------ataacatGTATCAA-----------------------TCCAAATCTAATAAACGTTGCCCAAAAAGTCGATAACTAGACGGGGGATATTCAatgaa
i caeSp111.Scaffold630  I 47 C 0
s caeJap4.Scaffold18142    3616 115 -   343467 GCACACAAAACAATACAAATATTGCCCGCGCAAACACA-------------GCGAAT-CTCCGTAGC---------TGCCA------------------TGTTgcgaa----------agaaaaatcaaagaat--------aaAACGGAT-------------------ATGAAATA----AA-----------------------TTTGAGCAAGAAA----------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2122277 700 +  4147112 I
e cb4.chrX              8899769 184 + 21540570 I

a score=-3154.000000
s ce10.chrX             3774172 4 + 17718866 -ATAA
s caeRem4.Crem_Contig0   847969 4 -  4500979 -ACAA
i caeRem4.Crem_Contig0  I 9 I 9
s caeSp111.Scaffold630  5844707 3 + 20921866 --caa
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2122977 3 +  4147112 --aTA
i caePb3.Scfld02_0      I 700 I 1
s caeJap4.Scaffold18142    3731 4 -   343467 TATA-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8899769 184 + 21540570 I

a score=124521.000000
s ce10.chrX             3774176 126 + 17718866 TTTCAGACAACTGGAAAAATGGGCTCCGCTCGTTCAAGTGACTGTGGTCAACTGTGCCGATGACAAGAACATGCCACTTTGCAGAGAGCACTCTGTTAGCTCATATCCATCTCTTAGAGTAAGCAA
s cb4.chrX              8899953 126 + 21540570 tttcagacagcTCGAAAAATGGGCTCCATTGGTCCAAGTTACGGTCGTCAACTGCGCCGATGACAAGAACATGCCACTCTGCAGAGAGCACTCTGTTAGCTCCTACCCATCTCTTAGAGTAAGACC
i cb4.chrX              I 184 C 0
s caeRem4.Crem_Contig0   847982 126 -  4500979 TTTCAGACAACTCGAAAAATGGACTCCTATCGTTCAAGTGACGGTTGTCAACTGTGCCGATGACAAGAACATGCCACTTTGTAGAGAACATTCTGTGAACTCGTATCCATCTCTCAGGGTAAGATT
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5844711 126 + 20921866 tttcagacaacTCGAGAAATGGGCTCCTCTGGTTCAAGTGACTGTTGTGAACTGTGCCGACGACAAAAACATGCCCCTGTGCAGAGAACACTCTGTCAGCTCTTATCCATCACTCAGAGTAAGAAT
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2122981 126 +  4147112 TTTCAGGCAACTCGAGAAATGGTCTCCACTAGTCCAAGTAACAGTTGTAAACTGTGCCGAGGATAAGAACATGCCGCTTTGCAGAGAACACTCTGTTAGCTCGTATCCTTCACTCAGAGTAAGCTA
i caePb3.Scfld02_0      I 1 I 33
s caeJap4.Scaffold18142    3735 126 -   343467 TTCCAGGCAACTCGAAAAATGGTCTCCATTAGTTCAAGTCACAGTGGTTAATTGCGCTGAAGATAAAAACATGCCACTCTGCAGAGAGCACTCGGTTAGCTCTTACCCAACGCTTAAGGTAAACTA
i caeJap4.Scaffold18142 C 0 C 0

a score=-12768.000000
s ce10.chrX             3774302 38 + 17718866 ----ACAATTTTTTAAATGAGAATGGAAATCTTAATACAACA
s cb4.chrX              8900079 18 + 21540570 ----------------AGGA--------ATTTGGAGTCATCA
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   848108 15 -  4500979 ----------------GTG-----------TTCGCATCAAAC
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  5844837 29 + 20921866 -----CCACTC-----ATGACTCTG---ATCTTTCATCACCA
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold18142    3861 41 -   343467 AAGctcaaatttatttattggTTTCGAAAATCCAAATGATT-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2123107 33 +  4147112 I

a score=149241.000000
s ce10.chrX             3774340 179 + 17718866 ATTTTCAGTACTTCAAATACAACTCGCACAATAAGGACGATGGAATGAAGTACAGTGGGGACAAATATGACATCAACAAGTTGGCTCATGATATCGCTGGTCTTGCTCAAGCCGATGCTCAAAAGCAAAACCCTGAAAGCTGGCCGACCTTCTTGCCACTTTCTGAGTA-----------AG------TATTTTGT
s cb4.chrX              8900110 178 + 21540570 TATTCCAGTACTTCAAATACAACTCAGCCTCCAAAGACGACGGTATGAAGTATAGCGGAGACAAGTATGATATCAATAAGCTGGCTCACGACATTGCTGGACTTGCTCAAGCGGATGCTCAACGACAGAATCCGGAAAACTGGCCAACTTTCCTTCCGCTATCAGAGTA-----------GGATCTTTT-------
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   848141 172 -  4500979 ttttttagTACTTCAAATACAACTCGGCCACTAAAGACGACGGTATGAAGTACAGTGGAGATAAATACGATATCAACAAGCTGGCTCATGATATTGCTGGTCTCGCACAGGCTGATGCTCAGAAACAGAATCCAGAGAGCTGGCCAACGTTCTTGCCACTTTCAGAGTA-----------AG------T-------
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold630  5844867 179 + 20921866 TGTTTCAGTACTTCAAATACAACTCTCAATCGAAGGATGATGGAATGAAGTACAGTGGAGACAAGTACGATATCAACAAATTGGCTCACGACATTGCTGGTCTAGCTCAAGCAGATGCTCAACGACAGAATCCAGAGAGCTGGCCAAGCTTCTTACCTCTTTCTGAgtt-----------ag------tttttcat
i caeSp111.Scaffold630  I 1 M 234
s caePb3.Scfld02_0      2123140 176 +  4147112 attttcagtacttcaaaTACGACTCTGCCACCAAAGATGACGGTATGAAATACAGCGGTGACAAGTATGATATCAACAAATTGGCTCATGATATTGCTGGCCTTGCCCAAGCTGATGCACAGAAACAAAATCCAGAGCATTGGCCTTCTTTCTTGCCACTTTCTGAGTC-----------AG------TTCAT---
i caePb3.Scfld02_0      I 33 I 9
s caeJap4.Scaffold18142    3902 183 -   343467 GATTTCAGTATTTTAAATATGCCTCAGCTAACAAGGATGATGGCATGAAATACAGCGGAGACAAATATGACATCAACAAATTGGCTCATGACATTGCGGGACTTGCTCAGGCTGACGCTCAACGTCAGAATCCAGAAACTTGGCCCACATTTTTGCCACTTTCAGAGTATGCAAGAATTCAG------T-------
i caeJap4.Scaffold18142 C 0 C 0

a score=141428.000000
s ce10.chrX             3774519 321 + 17718866 GATTAACGCAGATTTAAATATTTCAAAACAAC------CTTTTTAGCACTACCACGTTGGAAGAAGTGTTCAAGTCGATTGGAACAACTTCATATCTTGCAATTGTCGTTCAAGACAGTCCATCTGTAATAGCATGGGCGAACTTGATCAATTATCACGGGAACAATGGTGTCAAAGTTGCTTATGTTACCCAAAATCATCCAATTGCCACCAAGTTCTTCTCCGATGGCGGTGTGCATGCATTACTGTTCTCCAACGGAAATCAGGAGCCACTGTGGAAGAGTAGCAGCCCGGTCGACAAGTGGGTTGATGTTCAAGACAAAATCG
s cb4.chrX              8900288 316 + 21540570 CGTTTTCATAGctcttg-----gaaaaataga------agtttcAGCTCGACAACCCTCGAAGACGTCTTCAAATCCATCGGAAGCACTCCATACCTTGCAATCGTTGTTCAGGATAGTCCATCTGTTATTGCTTGGTCCAACCTGATCAACTATCATGGGAACAATGCATTAAAGGTTGCTTATGTTGAGCAGAAACATCAAATCGCTTTGAAATTCTTCTCCGATGGCGGTGCGCACGCTCTGTTGTTCTCCAATGGAAATGCTGAGCCAATGTGGAAGAGTAGCAGTCCGATTGAGAAGTGGTTAGATGTGCAGGAGAAAGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   848313 319 -  4500979 cattcttctaattttttatc--GCAGAAGAAA------TATTCCAGCGCATCAACCCTTGAGGATGTTTTCAAGTCATTGGGAACTACACCATATTTAGCAGTCATTGTCCAAGACAGTCCCTCAGTCATAGCATGGTCCAACTTGATCAATTATTATGGAAATAATGGATTAAAGGTTGCTTACGTCGGCCAAAAGCACCAAATCGCCTCGAAATTCTTCTCTGATGAAGGAGTACATGCTCTCTTGTTCTCTAATGGAAATGCTGAACCAATGTGGAAAAGCAGTAGTCCGATTGAAAAGTGGATGGATGttcaagagaaaattg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2123325 309 +  4147112 gattcttctgaatctggttt------------------tttttcagaaccacaTCCTTAGAAGATGTTTTCAAGTCCACCGGAAGTACTCCATATCTTGCAATCATAGTTCAAGATAGCCCAGAAGTTATCGCTTGGGCAAATCTCATCAATTATCACGGGAATAATGGTCTCAAAGTGGCGTATGTCAGCCAGAAGCATCAAATTGCTGAGAAGTACTTTACCGATGGAGGTGTTCATGCTTTGTTGTTTTCGAATGGAAATGCGGAGCCACTGTGGAAGAGCAGCAGTCCAGTTGAAAAGTGGATTGACgttgaagagaaaatcg
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142    4085 313 -   343467 -GTTatcct-------------tgaaaaaaaacatttccttTCCAGAAGCACAACCCTCGAAGATGTCTTCAAAACGATCGGAAGCACGCCATACCTTGCTGTGATTGCCCAGGACAGCCCAGCTGTTCTCGCATGGGCTAACATTATCAACTATCATGGAGGCACCGGCTTGAAAGTGACTTACGTGCCACAGACTCATCAAATCGCCACCAAGTTTTTCTCTGACGGAGCTGCTCATGCTCTTCTTTTCGCCAACGGAAACGCTGAGCCAATTTGGAAAAGCAGTAGCCCGATTGAGAAATGGTTGGATGTGCAGGAGAAAATTG
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5845046 234 + 20921866 M

a score=49092.000000
s ce10.chrX             3774840 68 + 17718866 ATGAGCTGATTGGAGATAAAATTGCCGCTTCGGGACCAACTGTTCATCCGATCAATGCTGCGGTAAG---------------T
s cb4.chrX              8900604 68 + 21540570 AGGAGTTGATTGGAGACAAAATTGCTGCAAGAAGTCCGACTATTCAGCCAGTGAACGCAGCGGTATG---------------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   848632 68 -  4500979 aggagTTGATTGGAGATAAGATTGCAGCTAAGAGCCCGACTATTCAGCCAATGAATGCTGCGGTAAG---------------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5845286 68 + 20921866 aTGATCTCATAGGAGACAAAATTGCCGCAAATGGACCAACTATCCAACCTATCAATGCAGCAgtaag---------------t
i caeSp111.Scaffold630  M 234 C 0
s caePb3.Scfld02_0      2123634 83 +  4147112 aGGAGTTGATTGGTGACAAGATTGCTGCTAAGGCTCCAACAATTCAACCAATCAATGCCGCGGTAAGTGGGTTCATCaccgtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    4398 68 -   343467 ACGATCTGATTGGTGACAAGATTGCCGCTAGAGCGCCAACTCAACAGCCGATTAACTCTGCGGTGAG---------------T
i caeJap4.Scaffold18142 C 0 I 582

a score=-4272.000000
s ce10.chrX             3774908 5 + 17718866 CT---ATA
s cb4.chrX              8900672 5 + 21540570 TTTTA---
i cb4.chrX              C 0 I 154
s caeRem4.Crem_Contig0   848700 1 -  4500979 T-------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5845354 2 + 20921866 tt------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2123717 2 +  4147112 tt------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    4466 582 -   343467 I

a score=-26315.000000
s ce10.chrX             3774913  42 + 17718866 AACATTTTTTTATGT-----------------------------------TGAAAA--------TGGGCA------------------------AATGGG-----------CTTGTAAAT-------------------------------------------------------------------------------------------
s cb4.chrX              8900831 211 + 21540570 TGCGGTCCGGCATTTGATGGTCGGGCTGGGCAAAAATTGCCGGCCCGaacttaaaaatcaattttgaagcagAACGATTTTTACTGAAGATTGTATTGGGATCCTCTATCATCTTGTATGCAGTTAGGCtcataatttcaattttgaagcgatttatCATGTATGCCAAAGAGCATTTGCacttgaattaaaaaaaaaacgtttacaacaa
i cb4.chrX              I 154 C 0
s caeRem4.Crem_Contig0   848704  50 -  4500979 Cacgattttctgttt-----------------------------------tcaaacttCGAGTTTGGGTC------------------------ATTGGG-----------TTTTATGTG-------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5845356  44 + 20921866 ----atttt---ttt------------------gaatca-----------ttgaaC-----ACATGGGTC------------------------ACtagg-----------ttttgaaat-------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2123719  39 +  4147112 ----gtttt---ttt-----------------------------------ttcaac----ggctTGGGTT------------------------ACTAGg-----------ttctttcca-------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    4466 582 -   343467 I

a score=416418.000000
s ce10.chrX             3774955 714 + 17718866  
s cb4.chrX              8901042 703 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   848754 779 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5845400 683 + 20921866  
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_0      2123758 777 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    5048 763 -   343467  
i caeJap4.Scaffold18142 I 582 C 0

a score=1860.000000
s ce10.chrX             3775669 38 + 17718866 CAGGAGAAGCACAGTATGTTATATAGATTTGGGAATTT
s cb4.chrX              8901745 19 + 21540570 CAGGAAAAACACAGTg--------aga-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   849533 10 -  4500979 CAGGAAAAAC----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2124535 20 +  4147112 CAAGAGAAACACAGTA--------AGAT----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    5811 23 -   343467 CAGGAGAAACATAGTG--------AGAATTT-------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5846083  8 + 20921866 I

a score=-4124.000000
s ce10.chrX             3775707 71 + 17718866 TTGGCGAGCTTGGAAAACGGGACTTATCTGAAAGTTTTCATGTAGCTATTATATAACAAATGTATCACAGC-
s cb4.chrX              8901764 16 + 21540570 --------------------attttatt------------------------------------ttgaagaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2124555 19 +  4147112 ----------------ACAGAACTAGTC------------------------------------TCGCAGC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    5834  0 -   343467 C
e caeSp111.Scaffold630  5846083  8 + 20921866 I
e caeRem4.Crem_Contig0   849543  0 -  4500979 C

a score=454.000000
s ce10.chrX             3775778 9 + 17718866 CAAAAAAAA
s cb4.chrX              8901780 8 + 21540570 -agaaaaga
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2124574 0 +  4147112 C
e caeJap4.Scaffold18142    5834 0 -   343467 C
e caeSp111.Scaffold630  5846083 8 + 20921866 I
e caeRem4.Crem_Contig0   849543 0 -  4500979 C

a score=-315.000000
s ce10.chrX             3775787 12 + 17718866 CTTGTAAGCAAT
s caeRem4.Crem_Contig0   849543  8 -  4500979 ACAGTAAG----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2124574  0 +  4147112 C
e caeJap4.Scaffold18142    5834  0 -   343467 C
e cb4.chrX              8901788  0 + 21540570 C
e caeSp111.Scaffold630  5846083  8 + 20921866 I

a score=0.000000
s ce10.chrX             3775799 8 + 17718866 CAGAAGAA
e caePb3.Scfld02_0      2124574 0 +  4147112 C
e caeJap4.Scaffold18142    5834 0 -   343467 C
e cb4.chrX              8901788 0 + 21540570 C
e caeSp111.Scaffold630  5846083 8 + 20921866 I
e caeRem4.Crem_Contig0   849551 0 -  4500979 C

a score=-2540.000000
s ce10.chrX             3775807 96 + 17718866 TTACGCCTTGGAGCTCTATTTTCCGGGCGCCGATAACCGGCCACACGTTCCGACCAGCGTATGGGTTCTTGGAAGTTGATAAGCCAAAATCTGTAG
s caeRem4.Crem_Contig0   849551 10 -  4500979 --------------------------------------------ATATTCTAAC------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2124574  0 +  4147112 C
e caeJap4.Scaffold18142    5834  0 -   343467 C
e cb4.chrX              8901788  0 + 21540570 C
e caeSp111.Scaffold630  5846083  8 + 20921866 I

a score=-235.000000
s ce10.chrX             3775903 32 + 17718866 ATTAAAAAATTGGTAGCGTACGAGTTTTTCTC
s caeJap4.Scaffold18142    5834 12 -   343467 GTTAAAATATTG--------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2124574  0 +  4147112 C
e cb4.chrX              8901788  0 + 21540570 C
e caeSp111.Scaffold630  5846083  8 + 20921866 I
e caeRem4.Crem_Contig0   849561  0 -  4500979 C

a score=0.000000
s ce10.chrX             3775935 8 + 17718866 TTGCTATG
e caePb3.Scfld02_0      2124574 0 +  4147112 C
e caeJap4.Scaffold18142    5846 0 -   343467 C
e cb4.chrX              8901788 0 + 21540570 C
e caeSp111.Scaffold630  5846083 8 + 20921866 I
e caeRem4.Crem_Contig0   849561 0 -  4500979 C

a score=-4271.000000
s ce10.chrX             3775943 15 + 17718866 -----ATACAATTGTTGCAA
s caeRem4.Crem_Contig0   849561  1 -  4500979 ---------A----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5846091  7 + 20921866 -----ACACAGT--------
i caeSp111.Scaffold630  I 8 C 0
s caeJap4.Scaffold18142    5846  9 -   343467 TGGtgacaa-----------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2124574  0 +  4147112 C
e cb4.chrX              8901788  0 + 21540570 C

a score=259046.000000
s ce10.chrX             3775958 527 + 17718866  
s cb4.chrX              8901788 554 + 21540570  
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   849562 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold630  5846098 489 + 20921866  
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2124574 490 +  4147112  
i caePb3.Scfld02_0      C 0 I 241
s caeJap4.Scaffold18142    5855 386 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-34733.000000
s ce10.chrX             3776485 119 + 17718866 ACAACGTGCACAAAACTTTCTGATCGTCAT-----------------TTCATGTATCTTGTCCGCA-----------------------AACACAT---------TACCAAAAAAAGTCGGATGGAAACATGTTTTTA----GAAAATAAGCACT-----------------TTCTTG---CAATAGCTATA
s cb4.chrX              8902358 178 + 21540570 ACAATCTGTGTTAAC-------ACCGTGATGGCGCATTGCGGAC---CGCCGCCTTTTGACGcgcagaaaattttttctcccgTTTACGAAAATATGGGTTTCTATGAGAAAAA----CCAATTGAAACTTGTATTTGATATCAAAATCGGAATTAGAAGAAAGGATTTAAGCTATTATGACAATAAATGAA
i cb4.chrX              I 16 I 47
s caeRem4.Crem_Contig0   850137 134 -  4500979 GTGGggtacgcaaac-------accgtcatCTCTCGCTGTG---GAATGCCGGAATTTTACGCGCA--------------------ACGAAAATATacacttt--ttacaaaaa----aggGTTTGAACTAGTG--------AAAAATAAGAGTT----------CTTAAATCTAAGA----AATAAATctt
i caeRem4.Crem_Contig0  I 19 I 29
s caeSp111.Scaffold630  5846589 111 + 20921866 -----GTCCGCAAAC-------ACCGTCACGCAGAAAGGCACAC---TCCGCAGACTAGACgcgca-----------------------aaaaaat---------tgaaaaaaa------------aacatggatTAAAAGAGAATATTAGATTT------------------TATTG----AACAAAGACA
i caeSp111.Scaffold630  I 2 I 28
s caeJap4.Scaffold18142    6241  26 -   343467 ----------------------------------------------------------------------------------------------------------------------------------------------gaaccttcatact----------gttttttttgttg--------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2125064 241 +  4147112 I

a score=148143.000000
s ce10.chrX             3776604 251 + 17718866 AATTTAAGGAATGTG-ATTAAT-ATTAACCAGTA-----AAATATTCTCAAAAAAAATCTATCA--------------TTCAGAATCTACCTGGGTACAAAGTTGTTGAGTACAAGGAAGGCAAAACTCTTTCTGCTGGCCAGCGACACCTCAATCCAAAATTCCAAGTTCATGCTGGCAAAGTGGATCAACTGGAAGCAAATGACAAAGTGAAAAACGTACTAGACGCAAGTCCTCAGCGAACATGGAAGGATATTGATGGATACGGT---AAG
s cb4.chrX              8902583 268 + 21540570 TAAACCATAAAGTCA-ATAATT-TTGGTCCTACC-----AAGAATGCTATTGGTCAACATATCTAACCATATGATATTTCCAGAACGTTCCTGGTTACAAAGTGGTTGAGTACAAGGAAGGAAAGACACTTTCCGCTGGTCAACGTCATCTGAACCCCAAGTTCCAAGTCCACGCTGGAAAAGTTGATCAACTAGAAGCCaacgaaaaagtgaaaaatgttctTGACGCCAGCCCACAAAGAACGTGGAAGGATATCGATGGATACGGTATCTCG
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   850300 253 -  4500979 TCAGCTACAAAATAA-AAGATA-ACTATATTTCA-----AGACACGTTAAATTtcgttgtttct------------tttttagacTCTTCCGGGATACAAAGTCGTCGAATACAAAGAAGGAAAAACACAATCTGCAGGACAGCGTCATTTGAAtcctaaatttcaaattcacgCAGGAAAAGTCGACCAATTGGAGGCTAacgagaaagtgaaaaatgttctCGACGCTAGCCCACAAAGAACGTGGCAGGATATTGATGGATATGGT---TAG
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold630  5846728 264 + 20921866 GTTCACATGAATACATATTATT-TTGGACTTTCATgtaggaaaatgaaaaatacaagtataatt-------taaaagtttcagaatctccCTGGATACAAAGTCGTTGAATacaaagaaggaaaaacgcTATCTGCAGGACAAAGACATCTGAATCCCAAGTTCCAAGTTCATGCTGGAAAAGTTGATCAACTAGAAGCCAATGAGAAAGTGAAGAATGTTCTGGATGCGGCTCCGCAGAGAACATGGAAAGATATTGATGGATACGGT---GAG
i caeSp111.Scaffold630  I 28 C 0
s caePb3.Scfld02_0      2125305 255 +  4147112 TTGTTTTCGAATGTA-ATAATTCTTCGTCCAACCTGAAAGCAAATGCAGAA------CGTTAtc-------taa---tttcagaatcttcctGGATACAAAGTCGTTGAATACAAGGAAGGAAAGACCTTATCTGCTGGACAACGTCATTtaaacccaaaatttcaagTCCACGCAGGCAAGGTTGACCAACTAGAAGCTAACGAGAAAGTCAAGAATGTGCTCGATGCAGCTCCACAGAGAACGTGGAGGGATATTGATGGTTACGGT---TAG
i caePb3.Scfld02_0      I 241 C 0
s caeJap4.Scaffold18142    6267 192 -   343467 --------------------------------------------------------------------------------cagaacCTGCCAGGATACAAGGTCGTTGAGTACAAGGAAGGAAAAACGCTGTCCGCCGGTTCGCGTCATTTAAACCCAAAGTTTCAAGTTCACGCGGGAAAAGTTGATCAACTAGAAGCCAATGATAaagttaaaaatgttttggatGCCAGCCCACAGCGAACGTGGAAGGATATTGATGGATACGGT---CAG
i caeJap4.Scaffold18142 C 0 I 26

a score=-14448.000000
s ce10.chrX             3776855 20 + 17718866 ACTAGGT-TCT---------------GGTTCTGAGT
s cb4.chrX              8902851 29 + 21540570 AATCACT-CATT-----Ctgttcaaacattttaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   850553 22 -  4500979 TAAAATT-CA------------CAAAAGATTCACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5846992 28 + 20921866 ATTCAT--CATTATTTATAGAATAACAACT------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2125560 27 +  4147112 TCTTATTGCAT------TGGGGTAGCCGTTCCA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    6459 26 -   343467 I

a score=141488.000000
s ce10.chrX             3776875 368 + 17718866 ATGTGAG---CATGTATGTGTTA-TAGACGGTCTTCCG---GACTCTGGCCGCTCACATTATTACTTCATCTTCCTCTCGTTGATTGGTGTCGCGCTGATTGTCATCTACTGCAAATACAGGAAGAATAGATCAAAGTTTTGGAAGACTTTCTATTACAAAAACGACTTCAAACTGTGATTCATTTTTGCCGGGGGTT---------------------TTTTGAGTTT----TGCTGACATATCACTCTCTATCTCTG-TATTTTTTCAACTTCTAACATC---TATGTTGTCCT-------ATG--TTTTTTTT-----------TGTTTTGCATGCT---CT-TTCACATTTCTACTTCAAAAGTTCAAAAAATCTTCTACTCCTTTTCATA-TCATATGTCA-TGTCCAGCTACC-------------ATTTTTTCCTA
s cb4.chrX              8902880 383 + 21540570 --------------aatttgttt-tagaCAATATTCCG---GAATCAAGCCGCACACACTGGTATTTCATCTGGCTCTCGTTGATCGGAGTGGCGCTGATCGTTGTCTACTGCAAATACCGGAAGAACAGatcaaagttttggaaaactttctATTATCAAAACGATTTCAAACTGTGATTA-tttttgctgggggctgttgtttcttttttaatttgattttgagttttggctgccgacgta----tctccgttttta-agttttgCGA------CAAATTTTATGTGTTGTCCT-------TTG--TTATATTTGCATGCATCCATCTATTGCACGTTGCTATCATTCCATATTATCTCTCTGCTTGCA---TAT------------TCGGTG-TTCC-TT----TAGTCAGCTATCATGGTATTGTattatttcttttct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   850575 359 -  4500979 AGATGaa---tttgaatcttttt-cagacaacatTCCG---GAGGGAAGCCGAAGTCACTACTACTTCATCTGGTTATCACTCATCGGAGTTGCCCTGATCGTCGTATACTGCAAATACCGGAAGAATAGATCAAAGTTTTGGAAGACTTTCTATTATCAAAACGACTTCAAACTGTGATTA--TTTTGCCggggtt----------------------ttttgagttt----tgctgACGTA----TCTCCTCTTTTA-AGTT------------AAAATT---CGTGTTGTCct-------atgttttttgtttgcatGCACTCTTAAACTGCACGTTTAAAT-GTTCCATTCCTTTTCTCCATTCTCA---TATCTTC---CAAAATCggtg-tttt-tttcaatgatcagctatc-------------atttttgttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5847020 333 + 20921866 --------------GATACGCTT-CAGAAAATCTTCCA---TCGTCAAGCCGTTCTCATCACTACCTCATCTGGCTATCGTTGATTGGCGTCGCACTGATTGTCGTCTACTGCAAATACCGGAAGAACAGAtcaaagttttggaaaactttCTATTATCAAAACGACTTCAAACTGTGAA---TTTTTGCctgggtt----------------------ttttgagttt----tgctGTCGCA----TCTC-CTCCCTT-AGTT------------AAAATA---CATGTTGTCCGTTTGTCCTTA--TTCAGCATGATCGTTT---CATATTGCAT------AT-ATGTCATTCC-TCTTTCATATCTCA-------------CACTTTCGGTG-TTGC-TGTCA-AGATAAGCTATC-------------ACTTTCAAACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2125587 348 +  4147112 -----------TTGTGAACGTTTATAGACAATCTTCCG---GAGACAAGCCGTTCTCACCACTACTTCATCTGGCTATCACTGATCGGAGTGGCGCTCATCGTCATTTACTGCAAATACCGGAAGAACAgatcaaagttttggaaaactttctaTTATCAAAACGACTTCAAACTGTGAATC-TTTTTGCctgggtt----------------------ttttgagttt----tgctgacgca----tcttgatttttg-agtt------------gaaatt---cATGTTGTCCA-------TTG--TTCTGCATGttctttctcactttttgcaCG-----AT-TTGTCATTCC-ACTTTATACTCTCA---TATCGTTCTCCACATTCGGTGATTTT-TGTCA-TGTTAAGCTATC-------------ACTTTCATACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    6485 354 -   343467 atgtaaaaaTCATATCTCAATTT-TAGACAGCCTCTCGTCCACGTCTAGCCGCACGCATCACTACTTCATCTGGCTCTCGCTGATCGGAGCAGCACTGATTCTCGTCTACTGCAAATACCGGAAAAACAGATCAAAGTTTTGGAAAACTTTCTATTATCAAAACGACTTCAAACTGTGATTC-TTTTTGC-AGGGTT----------------------TTTTAAGTTT-GCTACCCGTTTTA----TCCTGCTATTCACTACT------------AACTGT---CTTGTtgtcca-------gtt--ttttttttgggcgggTTA-TTCATGGCACTTT---AA-ATTAGGTTTA---------ATGGAA---CATGAATAACTTTGCTAAATA-TGTG-TTGCA-TGCt--gcaatt-------------atttttctcta
i caeJap4.Scaffold18142 I 26 I 1280

a score=4534.000000
s ce10.chrX             3777243 491 + 17718866  
s cb4.chrX              8903263 525 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   850934 502 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5847353 479 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2125935 537 +  4147112  
i caePb3.Scfld02_0      C 0 I 143
e caeJap4.Scaffold18142    6839 1280 -   343467 I

a score=304.000000
s ce10.chrX             3777734 27 + 17718866 -TCCTCC-----AACCCCTAGCAGTAGATCAAA
s cb4.chrX              8903788 32 + 21540570 -TATGCCCTAGAAGCACCCAACAGTAGGATAAA
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   851436 27 -  4500979 -TTTGTC-----AATCCCGAGCAGTTTAGTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5847832 25 + 20921866 GCTTGTA--------ACCCAGTAGCATATAGGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2126472 143 +  4147112 I
e caeJap4.Scaffold18142    6839 1280 -   343467 I

a score=-1871.000000
s ce10.chrX             3777761 14 + 17718866 AATTTCACCGATGC------
s caeRem4.Crem_Contig0   851463  6 -  4500979 --------AAATAG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5847857 11 + 20921866 ---------AATgtttagaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2126472 143 +  4147112 I
e caeJap4.Scaffold18142    6839 1280 -   343467 I
e cb4.chrX              8903820 42 + 21540570 I

a score=-3000.000000
s ce10.chrX             3777775  2 + 17718866 TT---------------------------------------
s caeRem4.Crem_Contig0   851469  8 -  4500979 TTCagata---------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2126615 41 +  4147112 ttgaaaaaacataacTGAGTAGGTTAGTTAAactataaaac
i caePb3.Scfld02_0      I 143 C 0
e caeJap4.Scaffold18142    6839 1280 -   343467 I
e cb4.chrX              8903820 42 + 21540570 I
e caeSp111.Scaffold630  5847868  0 + 20921866 C

a score=859.000000
s ce10.chrX             3777777 15 + 17718866 CAAAAAATAT--GAACC
s caeRem4.Crem_Contig0   851477 13 -  4500979 gaaaaaatat--gaa--
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5847868 15 + 20921866 caaaaaataa--gaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2126656 17 +  4147112 tgaaaaatgaatagaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    8119 15 -   343467 caaacaaaaa--caaat
i caeJap4.Scaffold18142 I 1280 C 0
e cb4.chrX              8903820 42 + 21540570 I

a score=235764.000000
s ce10.chrX             3777792 632 + 17718866  
s cb4.chrX              8903862 677 + 21540570  
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0   851501 616 -  4500979  
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  5847883 639 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2126673 637 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142    8134 661 -   343467  
i caeJap4.Scaffold18142 C 0 I 38

a score=310.000000
s ce10.chrX             3778424 23 + 17718866 G-TTGGGTAGA----------------------TGCGGGGG----------TTGAC
s cb4.chrX              8904539 27 + 21540570 GTTTGGGTAGA-------------------GAATAGAGAGG----------ATAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   852117 31 -  4500979 G-TTGAGTAGA-------------------ATTGAGAGGGG-----GGATTATAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5848522 53 + 20921866 G-TTGAGTAGAAATGGGAGAGAATGAATGGGTTGGGGAGGGGGGACGGA--TAAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2127310 31 +  4147112 G-TTGAGTAGATA-----------------ATTGAGAGGGG-----GGA--TAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    8795 38 -   343467 I

a score=129895.000000
s ce10.chrX             3778447 195 + 17718866 TCGTTCGTCTGAATTTGGTTTTGAATAAGAACTGAAAA----------TGAATTGATAAATT------------GGGTCATATTATTGT--TGACGAATCCAGTTGTCACGTCGTGGACGGGATGAGTC---GGTGGTTTTGGATGCGTGGTAGGCACTCAAAACAATCTCATCAGCTGATCTCTCCCGCCGAGCTGGGATGGGGGATGACTGCTCGGATCT
s cb4.chrX              8904566 196 + 21540570 TCGttcgtctgaaat----tctggattagaaaagggga----------ttact--gtatgttTAGGGGGACCGGGGGT--GATTAGTTT--TGACGGATCCAGTTGTCACGTCTTGGACGG---GAGTC---GGTGGTCTTGGATGCGTGATAGGCAGTGAGAACGATCTCATCAGCTGATCGCTCGCGTCTAGCTGGGACTGGAGACGATTGCTCAGATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   852148 189 -  4500979 TCGTTCGTCTGAAac----ttttgattagaaaaatgaa----------tgagtgaGTATGAT------------GAAT--GATTATTGT--TGACGGATCCAGTTGTCGCGTCTTGGACGAGACGAGTC---GGTGGTCTTGGATGCGTGGTAAGCGGAGAGAACGATCTCATCAGCTGATCTCTCACGTCTGGCTGGCACTGGAGAAGATTGCTCAGATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5848575 172 + 20921866 TCGTTcgtctgaaac---tttttgattagaAATGTAAG-------------------------------------AAT--GATTATTGT--TGACGGATCCAGTTGTCGCGTCTTGGACGG---GAATC---GGTGGTCTTGGATGCGTGATAGGCAGACAGAACGATCTCATCAGCTGATCTCTCACGTCTTGCTGGCACTGGAGAAGATTGCTCAGATCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2127341 199 +  4147112 TCgttcgtctgaaaa----ttttgattagaaCTGTAAGTGTGATAAAAGAAAt--gtatgatgatga-------tggt--gattaTTGT--TGACGGATCCAGTTGTCACGTCTGGGGCGG---GAATC---GGTTGTCTTGGATGCATGATAGGCAGTCAAAACGATCTCATCAGCTGATCTCTCACGTCTTGCTGGCACCGGAGAAGATTGCTCAGATCT
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold18142    8833 160 -   343467 tggtTCGTCTGAAAA---------------------AG------------------------------------tttt--gaacattttaataGCGAGTCCAATTGTCGCCTCTTGGTTGA---ACGTCTCTGGATGTTTTTGATGCGTGGTACGCGGTCAGAATGATCTCATCGGCTGTTCTCTCGCGTCTAGCTGGCACTGGAGACGATTGCTCTGATCT
i caeJap4.Scaffold18142 I 38 C 0

a score=1566.000000
s ce10.chrX             3778642 4 + 17718866 GAAA
s cb4.chrX              8904762 4 + 21540570 GCaa
i cb4.chrX              C 0 I 228
s caeRem4.Crem_Contig0   852337 4 -  4500979 GAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5848747 4 + 20921866 AAAA
i caeSp111.Scaffold630  C 0 I 54
s caeJap4.Scaffold18142    8993 4 -   343467 GAAC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2127540 28 +  4147112 I

a score=118.000000
s ce10.chrX             3778646 2 + 17718866 AA
s caeRem4.Crem_Contig0   852341 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142    8997 2 -   343467 AA
i caeJap4.Scaffold18142 C 0 I 33
e caePb3.Scfld02_0      2127540 28 +  4147112 I
e cb4.chrX              8904766 228 + 21540570 I
e caeSp111.Scaffold630  5848751 54 + 20921866 I

a score=511.000000
s ce10.chrX             3778648 13 + 17718866 AAAAATTTTTTAT
s caeRem4.Crem_Contig0   852343 13 -  4500979 GAGAATTattaat
i caeRem4.Crem_Contig0  C 0 I 34
e caePb3.Scfld02_0      2127540 28 +  4147112 I
e caeJap4.Scaffold18142    8999 33 -   343467 I
e cb4.chrX              8904766 228 + 21540570 I
e caeSp111.Scaffold630  5848751 54 + 20921866 I

a score=0.000000
s ce10.chrX             3778661 688 + 17718866  
e caePb3.Scfld02_0      2127540  28 +  4147112 I
e caeJap4.Scaffold18142    8999  33 -   343467 I
e cb4.chrX              8904766 228 + 21540570 I
e caeSp111.Scaffold630  5848751  54 + 20921866 I
e caeRem4.Crem_Contig0   852356  34 -  4500979 I

a score=284.000000
s ce10.chrX             3779349 14 + 17718866 ACAATAACACTTTC
s caePb3.Scfld02_0      2127568 14 +  4147112 ATAAcaacaataat
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18142    8999 33 -   343467 I
e cb4.chrX              8904766 228 + 21540570 I
e caeSp111.Scaffold630  5848751 54 + 20921866 I
e caeRem4.Crem_Contig0   852356 34 -  4500979 I

a score=1047.000000
s ce10.chrX             3779363 10 + 17718866 TGAACTAATA
s caeRem4.Crem_Contig0   852390 10 -  4500979 TGAATCAATA
i caeRem4.Crem_Contig0  I 34 C 0
s caePb3.Scfld02_0      2127582 10 +  4147112 aaaaacaatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142    8999 33 -   343467 I
e cb4.chrX              8904766 228 + 21540570 I
e caeSp111.Scaffold630  5848751 54 + 20921866 I

a score=976.000000
s ce10.chrX             3779373 4 + 17718866 TTTC
s cb4.chrX              8904994 4 + 21540570 TTCT
i cb4.chrX              I 228 C 0
s caePb3.Scfld02_0      2127592 3 +  4147112 -ttt
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142    9032 4 -   343467 TTTC
i caeJap4.Scaffold18142 I 33 C 0
e caeSp111.Scaffold630  5848751 54 + 20921866 I
e caeRem4.Crem_Contig0   852400 0 -  4500979 C

a score=803498.000000
s ce10.chrX             3779377 1217 + 17718866  
s cb4.chrX              8904998 1217 + 21540570  
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   852400 1207 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5848805 1176 + 20921866  
i caeSp111.Scaffold630  I 54 C 0
s caePb3.Scfld02_0      2127599 1228 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142    9036 1303 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-2714.000000
s ce10.chrX             3780594 13 + 17718866 CATTTTGGATTAT-------
s caeRem4.Crem_Contig0   853607  7 -  4500979 ------aaaagat-------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5849981 13 + 20921866 GATTGgggaagat-------
i caeSp111.Scaffold630  C 0 I 25
s caePb3.Scfld02_0      2128827 13 +  4147112 aatgaggaattat-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   10339 13 -   343467 -------aaatttgtttttt
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8906215 35 + 21540570 I

a score=-4122.000000
s ce10.chrX             3780607 21 + 17718866 AACTTGTTGTATTGATTTATT-
s caeRem4.Crem_Contig0   853626 13 -  4500979 --------GTATTAAAGTATG-
i caeRem4.Crem_Contig0  I 12 I 2
s caePb3.Scfld02_0      2128840 15 +  4147112 ------agattttcatgattc-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   10352 20 -   343467 --tttgctattttgccTATACC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8906215 35 + 21540570 I
e caeSp111.Scaffold630  5849994 25 + 20921866 I

a score=1537.000000
s ce10.chrX             3780628 3 + 17718866 GAA
s caeRem4.Crem_Contig0   853641 3 -  4500979 GAA
i caeRem4.Crem_Contig0  I 2 I 7
s caeSp111.Scaffold630  5850019 3 + 20921866 aaa
i caeSp111.Scaffold630  I 25 C 0
s caePb3.Scfld02_0      2128858 3 +  4147112 aaa
i caePb3.Scfld02_0      I 3 I 4
s caeJap4.Scaffold18142   10372 3 -   343467 GAG
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8906215 35 + 21540570 I

a score=784181.000000
s ce10.chrX             3780631 774 + 17718866  
s cb4.chrX              8906250 836 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   853651 772 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5850022 777 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2128865 768 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   10375 823 -   343467  
i caeJap4.Scaffold18142 C 0 I 640

a score=39004.000000
s ce10.chrX             3781405 143 + 17718866 CTTCAAACACC-GCCAGCGAACTGTCTAACAGTGGAGGAACGTGGAAATATTT--GA--GGTAAGGGTTCAATGA-GAATTGTTCGGC--GG--CAACTGTGTGTCAA--GCACGTTCAGTAATCTATTGCTGTTTTAAAATAGATTTT--TCTC--CG
s cb4.chrX              8907086 144 + 21540570 CTTCAAACAGTCGCAAG-GAACTGACTAACAGTGAAGGAACGTGAAAATATTG--GA---GAGTTCGTCACATGTGGAAATGTTCAACAGCAAATGGTTGGGGTTAAGGGAtttatttggga-----tttttgactCGAAATAacttttcatttg----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   854423 145 -  4500979 CTTCAAACACT-GCGAG-GAACTGACTAACAGTGAAGGAACGTGAAAATATTG--GA-GGGAGAAAGTTCCACGT-GAAATGTTCAGT--TACTCGACCTTGTTTAAGCATTTTTGTTAGCAATCAGTTCTAGActtgaaataactttt--ttgg----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5850799 141 + 20921866 CTTCAAACACT-GCGAG-GAACTGACTAACAGTTGAGGAACGTGATAATATTG--GAGGGGAAAAAGTTCCACGT-GAAATGTTCAGC--GACTCGTTAGTCTTTCAG--ATACTTTTAACAATCAACTATCATCTcgaaataactttt--t-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2129633 147 +  4147112 CTTCAAACAGT-GCGAG-GAACTGACTAACAGTAGAGGAACGTGAAAATATTGGAGAGGGAAAAAAGTTCCACGT-GCAATGTTCAGC--AACTCGttagttttgaac--at-ttttcatcgatcAGCTCAGATAcagaaataactttt--tttctg--
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold18142   11198 640 -   343467 I

a score=-6979.000000
s ce10.chrX             3781548 33 + 17718866 AACGTGCTGAAAAA--------TGTTTTGCTGAGCACAAAT---------
s cb4.chrX              8907230 28 + 21540570 -------------attttttttcattgtttca-------cTGTTCAGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   854568 18 -  4500979 -------------a---actttcatttttctg-------at---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5850940 14 + 20921866 ----------------------tgtctttttg-------at-------ca
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2129780 34 +  4147112 I
e caeJap4.Scaffold18142   11198 640 -   343467 I

a score=-23866.000000
s ce10.chrX             3781581 70 + 17718866 GCTTTTCTTTCAAAAGAAAACTCTACTCTACTTTGACAATTAATATCT--------------------------------------------------CGGATTTTCTAAGTTTCACAAA------------
s cb4.chrX              8907258 52 + 21540570 GCT---------------------------------CAGCTAAAACTT-----------------------------------------------ACTCGGACATTCAATAGGATTTAACAAGTTCGATAAA
i cb4.chrX              C 0 I 1391
s caeRem4.Crem_Contig0   854586 29 -  4500979 -------------------------------------aattaaAAT-------------------------------------------------------ATGTGATATAGTTCTTAACG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5850954 11 + 20921866 --------------------------------------------------------------------------------------------------------tttgaTTGCTC-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2129814 97 +  4147112 acttttc-------ag----------------ttggcaatagaaattttgagaagataCCAAATATTAAGATCTCAATTTATTCCACCTTAGTGGTTACAGAATTTAAATTGTTCATGAA------------
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold18142   11198 640 -   343467 I

a score=-99710.000000
s ce10.chrX             3781651 684 + 17718866  
s caeRem4.Crem_Contig0   854615 346 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5850965 382 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2129911 764 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   11198 640 -   343467 I
e cb4.chrX              8907310 1391 + 21540570 I

a score=-11676.000000
s ce10.chrX             3782335 32 + 17718866 AAATTTC----------------------CCATGA---------------------------------------TTCACCATTTCTTGAAGGT
s cb4.chrX              8908701 33 + 21540570 aaatttc----------------------tcatgGAAA--------------------------------------TAACACTACCGAACGGT
i cb4.chrX              I 1391 C 0
s caeRem4.Crem_Contig0   854961 18 -  4500979 -----------------------------TCAC----------------------------------------------TATTTTCAAAGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5851347  9 + 20921866 --ATTTT----------------------------------------------------------------------------------GGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2130675 91 +  4147112 --gtttttggattatttctACTCAAGATATCACGGAACttttatttgttctttctTGATTcatcatgaattttttttctgattcccAAAGGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   11198 640 -   343467 I

a score=93198.000000
s ce10.chrX             3782367 236 + 17718866 ATTTTATTTGCTACAGATTT-------TTCGTC----ATTCACACAGT--------TATTTTTTTG-------CAGTTCATGGGCATTGGTAAAAAAACTGTTTACCACTGTTTACCTCTCCGCTTTACAG-AACGAAGG----TTTGGGTG------AGCAGAAAAGAATTC-----------TTCCC----GTTTCATTCACTACCT-GGCCAACCAAACA----GTTATTTACTTTTTAGCGGTGGTCTTTTTTCAATC----GAATCAAAA----CGTTTGTCATGGGTTCGTGTGG
s cb4.chrX              8908734 279 + 21540570 GTGTTATTtacttccaacttttttgtctttcttacTCAcctacacacacacacaaacatttttgttacCCCCACTGTTCATGGCC------AACAAAACTGTTTACCACTGTTGACTTCTCCGCTTTACAG-AACgtcagtcattttttgaggaaatggGCACAAACGAGTAAGGAATTCAGTGGTGGTGATGGTCGCGTTTTCTTTGC---C---CCAAACTGTTAGTTATTTACTCTTCACTGGTGGCCTCGGTTCTATTCTTTCAATCAAAATGGCTTTTTGTC---------TGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   854979 261 -  4500979 GTGGTATTTACTCTTAATTT-------TTCATCACCATCTCACACACACgctcaattctttttttt-------ctgttcatggCC------AAGAAGACTGTTTACCACTGTTTACTTCTCCGCTTTACAG-AACGACAG---TTTTAAGATGGAATGGGCAAAAACGAGGAA-GAATTCAACGGTCGC----GTTTCGTTTTTGTTACTTGC---CCAAACT----GTTATTTACTCTTCATTGGTAGCCTCGCTTCTATTCTTTCAATCAAAG----TTTTTGTCATAAGTTCACGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5851356 229 + 20921866 GTGTTATTTACtcctgattt-------ttcatt----ttccacaCACA-----------TTTCATG-------CTGTTCATGGCC-------ACCA-ACTGTTTACCACTGTTTACTTCGCCGCTTTACAG-AACGACGG----TTTGAGAt------ggaagaaacgaaaa--------ggaATTCGC----GTTTTATTTCCTACCT-TGC---CCAAACA----GTTATTTACTCTTCAGTGGTGGCCTCGATTCTATTCTTTCAATCAAAG----CTTTTGTCATGGGTTCATGTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2130766 234 +  4147112 GTGTTATTtacttctaattt-------ttcatc----ttccaCACGCC-----------TTTCATT-------GTGCTCATGGCC------AACAA-ACTGTTTACCACTGTTTACTTCTCTGCTTTACAG-AACGTCGG----TTTGAGAT------GGCAGAAAAGAGGAA----TTCAGAGGTCgc----gtttcattttcaaccc-AAC---CCAAACT----GTTATTTACTTTCTCGTGGTGGCCTCTATTCTTTCCTTTCAATCAAAG----CTTTTGTCATGGGTTCATGTGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   11838 214 -   343467 actatatttgCCAGTGTTTC-------TTTAAT----TTCTGCTCAGT-------TCCGTTCTATT-----CTCTGTTCTGGGCC------AACTG-ACTGTTTACCACTGTTTACTTCTCCGCTTTACAGTTACAGAAG----GGTGGGTC------GAAGTGAAAGTGGAG--------------------AATTCATTTCT------CTC---ACATACA----GTTGTTTACTTTTAAGTGTTGGCCGCAGTC--------TCAATGAAAG----CTTTTGT--TGGGTTTGGTTGG
i caeJap4.Scaffold18142 I 640 I 3270

a score=7303.000000
s ce10.chrX             3782603 60 + 17718866 CTTCCGAAAGTTTGGTTGT---CATTTGAAACAAAAAAT---TTGGAAGTTGAAA----AGAAATTGAAA--
s cb4.chrX              8909013 58 + 21540570 TTTCCGATGGTTGGTGTTT---AATTTGACAGAGACGAA---TTTA--------ggtttaaaacttttgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   855240 55 -  4500979 CTTCCGATGGTTGGTGTGtgcaattttgagaaaattaaa---ttca--------a----aaaagttctta--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5851585 57 + 20921866 CTTCCGATGGTTGATGtgt---aatttgaaacaaaatta---taGACA---Gaca----gaaaaccaaaa--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2131000 55 +  4147112 CTTCCGATGGTTGGTGTGT---AATTTGGGAaagaattaattttga--------a----aaaaattaaga--
i caePb3.Scfld02_0      C 0 I 1307
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=-9027.000000
s ce10.chrX             3782663  90 + 17718866 CGTCAC------AGGATTGTATTATTTTTCA-------------AGGTGTTTGATCT---------CTATTTAAAATC----ATTAAAACTATAAAATGAAAGATTATTTTGAAAAAAAAAA---
s cb4.chrX              8909071 108 + 21540570 aatcagagtACCAGGAACATgtggtttttttgttaataGTCCACAGGAAATCAGTGAAGCAAGTGCTTGTAAAAGATCTAAAATCTAAAG-----------------TTTTCATGAACCAATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   855295  83 -  4500979 ------------tGGAACAAAAGGTTTTTTGGTATATG------Aggaatttgatta---------ttttaaaaaattgaatataagAAG----------A-----ATTGTGAAGTACTAATcaa
i caeRem4.Crem_Contig0  C 0 I 945
s caeSp111.Scaffold630  5851642  82 + 20921866 ---taaag----ggaaatttatgatttttgatcATATA----------------------------ATGTCTAAATTCGCATatcaaaacaatgaaatcaa-----aCTGTGAAGTGCTACT---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2131055 1307 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=-4290.000000
s ce10.chrX             3782753  99 + 17718866 ----------TGGAATTAAAATTCAAAATCATTATTATTTACAT-------AATTGGAAGCAGAGGAAGATATAATT-------------TTTTTAGGTTGAATTTCTGAGACTTGAAGCACATTATTT
s cb4.chrX              8909179 129 + 21540570 AGACAATAAAAGGATTTCAAAGTGGAAATCCATGAAACTCAAATTGAAACGAAATCtgaatagttcaaaaaatcaaaacataaTTGTTTCACAGTAAATcgaatcttttgaaattcaagtaAATTGgtt
i cb4.chrX              C 0 I 929
s caeSp111.Scaffold630  5851724  91 + 20921866 ------------TGTGACTGATCAgaaatcatttaaaa-aacattgatTCGAACggtaaacag----aaaaataaaa-------------attggaatcCAGGTTTTATGAgatggaatca--------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2131055 1307 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e caeRem4.Crem_Contig0   855378 945 -  4500979 I

a score=-936.000000
s ce10.chrX             3782852 372 + 17718866 TGGTACTGTTAAAAATC-CCATCGTT----GTGTCGAA------TGTTTGATTTATATTGAACATTTATATGTTTTTTACTGCCTGAAAATAGTTATTTTCAATCAACAATTTTGAGAAGTTGCTCGAAAACAGCCTCAAGCTTGGAATTAGCTGACTGATACTTCGATCGGCACTTTGATATTAGAGCCAGTTATTTAACAGTTTTTCAAGAATTTAAATTGAAGGGAAAACTATTTTTTAAAGGTACAAATATT-TTTTATATCTCATATT-----TAAATCTACCTTTTTTCTTCA-AATAGAATTCAAGGATTCCGTTCAATTGCAAGTCGCAAATTTCGGCTTTTAAACGGAAAATCAAGAATCAAAATACCAAAAACTCTACAA
s caeSp111.Scaffold630  5851815 243 + 20921866 ----------aaaaatcacaatcgtttaaaattttgaaatacaggattcgatttgaatagaataattatgggtttt--------------------ttttcaagaaccaa-----------------aaaacattCTCA--TATGGTATAAGTT-------------------------------------------------TTTATTAGGAATCAAAAT----GAGCGAACCAATTATTGAAATAACTGGTATTATGCAATACAtcatattctgaataaatttctttttctatcccATAAGAGAA----------------------------------TAGGTTATTATCCTG--------GAACCAATAtatcaaaaa---tgcaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2131055 1307 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8909308 929 + 21540570 I
e caeRem4.Crem_Contig0   855378 945 -  4500979 I

a score=0.000000
s ce10.chrX             3783224 113 + 17718866 TTAAatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatTGTTATGAT
e caePb3.Scfld02_0      2131055 1307 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8909308 929 + 21540570 I
e caeSp111.Scaffold630  5852058   0 + 20921866 C
e caeRem4.Crem_Contig0   855378 945 -  4500979 I

a score=335.000000
s ce10.chrX             3783337 202 + 17718866 AATAATTGGAAAAGGAACACATATATCTCGAATGAAAAATGATACCCAGCACAAATTCACCAAACGATTAT------TTTTCATGTTCCTATAATAAATCTTGACTTACATAATTGTCTGGA---TAATATATT-ATTGTTTTTTTTTCCAAAAATAAATACTTTGAA--TTGCATTCGAACATCCACCC-TCCGGAATACATCTAC--AAACTAAA
s caeSp111.Scaffold630  5852058 187 + 20921866 aataaT--------------ATCCATTTTGA--GAACAATTACCTTCAGAATA---TCGCTAGACTAGTGTTGTGTGTTGGTGTTTTCTTGCCAttcatctcaattttctgatttttctagaaccGAATTTATTCATTGTGTCTGCTT-----------TATTCTGAAAGATGTATTCGTACTTATTCTCATACAAAAAACGTCCATCGAAACCAGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2131055 1307 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8909308 929 + 21540570 I
e caeRem4.Crem_Contig0   855378 945 -  4500979 I

a score=2105.000000
s ce10.chrX             3783539  66 + 17718866 AAAAAAAGCGGCAATCCGTCATAATCCATCATTT--TACCCA-------------------------------CATAGA-TTATTCGC----------A---TATTTCCTT--AC
s caeSp111.Scaffold630  5852245  98 + 20921866 --------AGTCGATTCGTCATAATCCATCATTT--CACTCTTTAttctccactttttttctctattttcttttgaagatttATTCACTAAAGAC---ATTCTGCTTCTTC----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2132362 110 +  4147112 AAAGTAAACGTCAATCCGTCATAATCCATCATTTCCCACTCGTTTCCTTTTACTTCTTTTC----CTTTACTTCACAGA-TTATTCACTAATGGCCCAACTCTGTCAATTTGGAC
i caePb3.Scfld02_0      I 1307 C 0
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8909308 929 + 21540570 I
e caeRem4.Crem_Contig0   855378 945 -  4500979 I

a score=10189.000000
s ce10.chrX             3783605 48 + 17718866 AACTGGATTTTCGAAATTGCTTCCCATCCCGAGGTTACTCTCTTTATT
s caeRem4.Crem_Contig0   856323 46 -  4500979 AACTAAATTCTTGGAATCCATCACAATTCAAAG--AGCGCTCATTATT
i caeRem4.Crem_Contig0  I 945 I 6
s caeSp111.Scaffold630  5852343 45 + 20921866 -ATTGAGTTCTTCGAactcatttcaattcaaaa--aacgctCATTACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2132472 46 +  4147112 AACTGGATTCGTGGAATCCTTCTCAGTTCAAAG--TGCACTCATTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8909308 929 + 21540570 I

a score=44795.000000
s ce10.chrX             3783653 240 + 17718866 ------TGAAACGTGAGTTTTATAAATTTAAACGTAGCC---AGTAAAGTGCATAGAATTAGAA-AATCATATGAAGGGTTTCG-GACATTTTTTCATCATTTAATTTCAATTTTATTTTCATTCA--AGACATTACAA---GA----GTTCTAAA----GGTT-------A------AGAGTGC----AGCCAAGCAAGCT-----A---------AATTTTCGAGTCATTTTTCCTATTTCTTCTGCGCTCAAAAA-CGACAACAAGATATGTGGATAGCTGTTCAAATATTCT
s cb4.chrX              8910237 250 + 21540570 ------TGAAAcgtgaaattcataaattcagacgtagcagagaaaaaagaagatgcaATAAAAG-TATTATATGCAAGGTTTCC-ggaactttttcattttc----ttcaacattt------------t--cgctgcaattcgcatttttttcttg----gattttctttgattcttcaaaatga----aagTTTGCGATATTGcgaa------tttattcattttttcatcttttc-atcCATCATCTATTTAAAA--CCGCCAC---ATATATGGATAGCTGTTCAAATATTCC
i cb4.chrX              I 929 C 0
s caeRem4.Crem_Contig0   856375 229 -  4500979 ------GTGGACGTGGAATTTGTGAAGTGAAGTGTAGCA---AGTAAAGTGTATGCAATAAAAG-TATCATATGCCGTGTTTcc-gaaacttttttatttccatttttctgcatTC------------GGATATTGCAATTCA-----GTTTCTCA----AACT-------ATTGGTTGAAGTTT----AAATATGTGGCAT-----A------TCTGTTTTCCGTGCCACCTTC-----------TCCAGTGAAAA--CGACAACAAGATATGTGGATAGCTGTTCAAATATtct
i caeRem4.Crem_Contig0  I 6 I 573
s caeSp111.Scaffold630  5852388 259 + 20921866 CACATTGTGGACGTGGAATTCATGAATTCAAGCGAAGTA---AATGAAGTGCATGCAATAAAAAGTATCATATGCTGAGTTTCCggaaactttttctatttctcttttttgcatttttttctc-----gaatattGCACCGTGA----ACTCCATAGACTAAGT-------AATAActgaagttc-aaaaaacatctaaagt-----c------ttttttgttcctttcacttcat---tttttcattcgttttaa---CGACAACAAGATATGTGGATAGCTGTTCAAATATTCT
i caeSp111.Scaffold630  C 0 I 576
s caePb3.Scfld02_0      2132518 266 +  4147112 CACATGGTGGACGTGGAATTTGTGAATTGAAGCGTAGCA---AAAGAAGTGTATGCAATAAAAA-TATCATATGCCGggcttcc-aaaacttttt---ttcctcatctttgcattttcttcactttctggACACTTCttctcaa----gttttgaa----aagt-------actgggcaaagttcgaaaagaaatctagagt-----ccttttttcttttgcttttttcacctttt--atttttcattcacgACAAAAGCGACAACAAGATATGTGGATAGCTGTTCAAATATTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=38.000000
s ce10.chrX             3783893 1 + 17718866 C
s cb4.chrX              8910487 1 + 21540570 C
i cb4.chrX              C 0 I 1862
s caePb3.Scfld02_0      2132784 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e caeSp111.Scaffold630  5852647 576 + 20921866 I
e caeRem4.Crem_Contig0   856604 573 -  4500979 I

a score=496.000000
s ce10.chrX             3783894 26 + 17718866 --------------------------------CCAATCT-TCTCAACTCTTCGTCTTTT
s caePb3.Scfld02_0      2132785 59 +  4147112 TAGTATGTGATGAGAGCTACCACGCACACGGACAAAtctctcttaactcttcctctttt
i caePb3.Scfld02_0      C 0 I 1022
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8910488 1862 + 21540570 I
e caeSp111.Scaffold630  5852647 576 + 20921866 I
e caeRem4.Crem_Contig0   856604 573 -  4500979 I

a score=0.000000
s ce10.chrX             3783920 1267 + 17718866  
e caePb3.Scfld02_0      2132844 1022 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8910488 1862 + 21540570 I
e caeSp111.Scaffold630  5852647  576 + 20921866 I
e caeRem4.Crem_Contig0   856604  573 -  4500979 I

a score=461.000000
s ce10.chrX             3785187 10 + 17718866 TAGAATAATG
s cb4.chrX              8912350 10 + 21540570 taaaatacTA
i cb4.chrX              I 1862 C 0
e caePb3.Scfld02_0      2132844 1022 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e caeSp111.Scaffold630  5852647 576 + 20921866 I
e caeRem4.Crem_Contig0   856604 573 -  4500979 I

a score=182.000000
s ce10.chrX             3785197 2 + 17718866 AA
s caeRem4.Crem_Contig0   857177 2 -  4500979 aa
i caeRem4.Crem_Contig0  I 573 C 0
e caePb3.Scfld02_0      2132844 1022 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8912360 0 + 21540570 C
e caeSp111.Scaffold630  5852647 576 + 20921866 I

a score=-3970.000000
s ce10.chrX             3785199 153 + 17718866 TTGCTTTCTGATCATTGAA-ACTGTTTTC-CTCCTCATTTACC--------CTCCGGTGATCACAATGC----------------AATTTTGATGGTAAACAACTCATTCCTTATCAATGGCAAAC------GCT-----------TCGAAATTCATTAACATCTCACTACTT-----------------------TGTCTTTCCTT----GTGTTGA--------AATAT---
s cb4.chrX              8912360 182 + 21540570 ATGCTTATTGATCTCTTAACATTGTTTCCATTTCCCCTTTTTC--------TATCGAAAGTCACGTTGCAAACTGTGATAATGATAattattatggtaaacaa--taTCTCTTATCATT---------------------------TTGTATTCAGTTCCTACCAAACTAGCT--GAATTTTTgtctaatt-----tttctttcaat----ggCTTTATTTT----AATGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   857179 217 -  4500979 gtgatttATGATCTCTta--attgttttc-tctctcaGTTCTCATCGCTCTTTTCGTTTGTCACGTTGCTAAC------AAAGATAATTTAAATGGTAAACAA--TACACCTTATCATTTGCCAAT------ACTGTTGATTTGCATTTTCTTTCGTTTGTACCGCATCACCTACAAATTCTTTTCTATTTAACTATCTCCTTCATTTTCAAGATTGGTTCCAAGAAATAAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5853223 194 + 20921866 TTGATTTCTGATCTCTTagcattttct---tttgttttctctcattgAC--TCTCCCTTGTCACGTTGCTAAC------AGAATTGATTATCACTATAAACAAC-TGCCCCTTATCACTATACACCCTCTGAATTCTCGATTTAC-ACGTATCTCGTTTG---------ACCT--GGAATACTAATCATTA-----GTGCCGACCCT----GTATTGAATCT------TAAAA-
i caeSp111.Scaffold630  I 576 C 0
e caePb3.Scfld02_0      2132844 1022 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=81620.000000
s ce10.chrX             3785352 558 + 17718866  
s cb4.chrX              8912542 541 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   857396 545 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5853417 574 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2133866 514 +  4147112  
i caePb3.Scfld02_0      I 1022 I 960
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=906.000000
s ce10.chrX             3785910 3 + 17718866 GCA
s cb4.chrX              8913083 3 + 21540570 ATA
i cb4.chrX              C 0 I 690
s caeRem4.Crem_Contig0   857941 3 -  4500979 ATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5853991 3 + 20921866 ATA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I

a score=-910.000000
s ce10.chrX             3785913 27 + 17718866 -----ATTTT---TTCCTGATAATTTTACT--TTTAG-
s caeRem4.Crem_Contig0   857944 29 -  4500979 --ACACCTCTATATTCC----AGTTTCAAT--TTTAG-
i caeRem4.Crem_Contig0  C 0 I 784
s caeSp111.Scaffold630  5853994 31 + 20921866 GTAGAGctct---ttcc----aattttcatcCTTTGAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8913086 690 + 21540570 I

a score=567.000000
s ce10.chrX             3785940 32 + 17718866 GTCTATATATGACTTGAAGTTCAGAAGTAGCT
s caeSp111.Scaffold630  5854025 27 + 20921866 GCTAACTT-----TTAAAGTTCAAAACTAGTT
i caeSp111.Scaffold630  C 0 I 607
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8913086 690 + 21540570 I
e caeRem4.Crem_Contig0   857973 784 -  4500979 I

a score=0.000000
s ce10.chrX             3785972 1319 + 17718866  
e caePb3.Scfld02_0      2134380  960 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e cb4.chrX              8913086  690 + 21540570 I
e caeSp111.Scaffold630  5854052  607 + 20921866 I
e caeRem4.Crem_Contig0   857973  784 -  4500979 I

a score=302.000000
s ce10.chrX             3787291 6 + 17718866 TTAAGT
s cb4.chrX              8913776 6 + 21540570 tcaaat
i cb4.chrX              I 690 C 0
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e caeJap4.Scaffold18142   12052 3270 -   343467 I
e caeSp111.Scaffold630  5854052 607 + 20921866 I
e caeRem4.Crem_Contig0   857973 784 -  4500979 I

a score=1181.000000
s ce10.chrX             3787297 11 + 17718866 TTTTTTCCCTG
s cb4.chrX              8913782 11 + 21540570 ttacttCTCAA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   15322 11 -   343467 ttttttcacag
i caeJap4.Scaffold18142 I 3270 C 0
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e caeSp111.Scaffold630  5854052 607 + 20921866 I
e caeRem4.Crem_Contig0   857973 784 -  4500979 I

a score=-561.000000
s ce10.chrX             3787308 2 + 17718866 TT-
s caeRem4.Crem_Contig0   858757 2 -  4500979 TT-
i caeRem4.Crem_Contig0  I 784 C 0
s caeSp111.Scaffold630  5854659 2 + 20921866 TT-
i caeSp111.Scaffold630  I 607 C 0
s caeJap4.Scaffold18142   15333 2 -   343467 -ta
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2134380 960 +  4147112 I
e cb4.chrX              8913793 0 + 21540570 C

a score=146802.000000
s ce10.chrX             3787310 554 + 17718866  
s cb4.chrX              8913793 543 + 21540570  
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   858759 491 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold630  5854661 525 + 20921866  
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      2135340 511 +  4147112  
i caePb3.Scfld02_0      I 960 I 5
s caeJap4.Scaffold18142   15335 458 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-2357.000000
s ce10.chrX             3787864 17 + 17718866 TCTTTCACCATCTCCTT----
s caeRem4.Crem_Contig0   859263  7 -  4500979 ----------tctttct----
i caeRem4.Crem_Contig0  I 13 I 1
s caeSp111.Scaffold630  5855191 14 + 20921866 ---GAATTCgcctttct----
i caeSp111.Scaffold630  I 5 I 1
s caePb3.Scfld02_0      2135856 14 +  4147112 ---cttttcttcttttt----
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold18142   15793 17 -   343467 ----tctttttccttttccca
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8914336 14 + 21540570 I

a score=172016.000000
s ce10.chrX             3787881 580 + 17718866  
s cb4.chrX              8914350 588 + 21540570  
i cb4.chrX              I 14 I 4
s caeRem4.Crem_Contig0   859271 541 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 40
s caeSp111.Scaffold630  5855206 537 + 20921866  
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2135871 509 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   15810 637 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-11400.000000
s ce10.chrX             3788461 41 + 17718866 AAATTGAAAA-------------------CTGTTCAAAATAAACAACAATAAATAAATAA
s cb4.chrX              8914942 51 + 21540570 CAATAATAAACatccatgaaaaatgtaacttccttgttttttttttctcaa---------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold630  5855743 24 + 20921866 -----------------------------ttcttcattatctGTACCGCTAAT-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2136380 18 +  4147112 -----------------------------TTCTTCAT------TACCACTAat-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   16447  8 -   343467 ------------------------------tcttcaag----------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   859812 40 -  4500979 I

a score=183586.000000
s ce10.chrX             3788502 289 + 17718866 AAAATCAAT-----CGATACAA------AGTTGTTTATTGCATTGTT-------TGAGGGAGAT--ATGTCTCGAAG-----TATTTTC-------------ACCGAGAAA------------------------TGGCCC---GCGAGACAACTTACAACGCGTATATATGT-GTGTGTGTGTGCCCACTT-CAT-GCGAAAATAGTGCAGCAATCACCAGAGACGC------------ACTCGGGGAGGGCCGATTTTCGAAAAATGAACAATAAAACTG-CCCCGT--GGT-----GGCTGATCGCTGTTGTGTACGTTACGTGTATGTGAAGGTCGACAACATCTTCC----CTTT-TTCGTGTTGACTAACATGACC
s cb4.chrX              8914993 328 + 21540570 aaaatcgatatctaTGAGAGCG------ATTTATTTATTGTGTTGTT--GAGTGGGGGG-AGATAAATG--TCGAAG-----T-TTTTCTCGGGTGGGGGAAACTGAGAAA------------------------TGGCCCAGGGCGAGACGATTTACACTGTGT-TATATGT-TTGTGTGTGTGCCCACTT-CATCGTGGAAATAGTGCAGCAATCAGCGGAGACGCCAGCGGCGGAGGCCcc--------ccgattttcgaaaagtgaaCAATAAAACTG-CCCCGCGAGGTTGATGGGCTGATCGTTGTTGTGTACGTTACGTGTGGTTGAAGGTCGACAACACCTTCCGCCTTTCC-TTCATGTTGACTTACAAGGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   859852 281 -  4500979 aaaatcaat-----cgataagc------AATTGTTTATTGTGTTGTT--GAGCGAAAAGCAGAT--ATG--TCGAAG-----T-TTCTC-------------GCTGAGAAA------------------------TGGCCCC--CCGAGAAGACTTACACTGCG----TGTGT-ATGTATGTGTGCCCACTT-CAT-GAAGAAATAGTGCGGCAATCAGTGGAGACGC------------TCTa--------gcgattttcgaaaagtgaacAATAAAACTA-CCCCGT--GGTTGAT-GGCTGATCGTTGTTGTGTACGTTAC--TTGGTTGAAGGTCGACAACACCTTCC-----TCC-TTCATGTTGACTTACATGGCC
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold630  5855767 286 + 20921866 AAATTCAAT-----CAATAAGC------TATTGTTTATTGTGTTGTTGAGAGTAGAAAGGAGAT--Atg--ttgaagtttttt-ttttctcg----------gcTGAGATG------------------------TGGCCC---GCGAGACGACTTACACCGCG----TGTA-------TGTGTGCCCACTT-CAT-GATGAAATAGTGCGGCAATCAGAGGAGACGC------------TCTg--------tcgattttcgaaaagtgaaCAATCAAACTACCCCCGT--GGTTGAT-GGCTGATCGTTGTTGTGTACGTTAC--GTGGTTGAAGGTCGACAACACCTTCC-----TTCATTCATGTTGACTTACATGGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2136398 285 +  4147112 aaaatcaat-----cgataagc-----TTTTTGTTTATTGTGTTGTTGAGAGCGGAAAGGAGAT--ATG--TCAAAG-------TTTTCTCG----------G-TGAGAAA------------------------TGGCCCA--GCGAGACGACTTACACCGCG----TGTAT-GTATGTGTGTGCCCACTT-CAT-GAAGAAATAGCGCGGCAATCAGTAGAGACGC------------TCtc--------tcgattttcgaaaagtgaacAATAAAACTA-CCCCGT--GGTTGAT-GGCTGATCGTTGTTGTGTACGTTAC--GTGGTTGAAGGTCGACAACACCTTCC-----TTC-TTCATGTTGACTTACATGGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   16455 305 -   343467 aaaatcaat-----caataatgATTGTTGGTTGTCTCACGTGTTGTT--GAGTGAAAAAGAGAT--ATG--T----------A-TTCTTCCG----------GACGagaaggaagaaaagaaagatgTCAAATTTTCTCTC---AAGAAACGACTTACACAGCG----CGTATCGTGTGTGTATGCCCACTTGGAT-GTCGAAATAGTGTGGCAATCACGAGAGAGGC------------GCGa-------tttgattttcgaaaaatgaacaAT-AAACTA-TCCGTC--GGGTGTG-GTTACCTGGTTGTTGTGCACGTTAC--TTGTTTGAAGGTCGACAACATCTTTC-----------CATGTTGACTTACAAGGCC
i caeJap4.Scaffold18142 C 0 I 373

a score=1779.000000
s ce10.chrX             3788791 27 + 17718866 ---------GGGGTCGAGTAAAATAGTGTACAGGTA---------------------
s cb4.chrX              8915321 23 + 21540570 TTCC-----GAGG---------ACATTGTACGAGTGg--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   860133 48 -  4500979 TTCCGAAGAGAGG---------ACAGTATACGAGTAGTTTACAGAACAAGACAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5856053 34 + 20921866 TTccgaagagaga--gaggcgAAAAGTACACGAGTA---------------------
i caeSp111.Scaffold630  C 0 I 22
s caePb3.Scfld02_0      2136683 30 +  4147112 TTCCGAAGAGAGA------CAAAAAGTATACGAGTA---------------------
i caePb3.Scfld02_0      C 0 I 551
e caeJap4.Scaffold18142   16760 373 -   343467 I

a score=-251.000000
s ce10.chrX             3788818 15 + 17718866 CATACGCCC----AATGTT-
s cb4.chrX              8915344  6 + 21540570 -------------atcgtt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   860181 19 -  4500979 TATACGCCGATTCAATGTT-
i caeRem4.Crem_Contig0  C 0 I 315
s caeSp111.Scaffold630  5856109 16 + 20921866 TATACTCaa----agtgttt
i caeSp111.Scaffold630  I 22 C 0
e caePb3.Scfld02_0      2136713 551 +  4147112 I
e caeJap4.Scaffold18142   16760 373 -   343467 I

a score=-1707.000000
s ce10.chrX             3788833 33 + 17718866 -TTGAGATTAGAGTATTGTTGTGAGAAGGGTGAA------
s cb4.chrX              8915350 26 + 21540570 tttgaaa--------------aaaaataaagacaGCTAGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5856125 30 + 20921866 -ttgaaatt---tttttgttttcaaatggaggaa------
i caeSp111.Scaffold630  C 0 I 229
e caePb3.Scfld02_0      2136713 551 +  4147112 I
e caeJap4.Scaffold18142   16760 373 -   343467 I
e caeRem4.Crem_Contig0   860200 315 -  4500979 I

a score=-4213.000000
s ce10.chrX             3788866 709 + 17718866  
s cb4.chrX              8915376 487 + 21540570  
i cb4.chrX              C 0 I 47
e caePb3.Scfld02_0      2136713 551 +  4147112 I
e caeJap4.Scaffold18142   16760 373 -   343467 I
e caeSp111.Scaffold630  5856155 229 + 20921866 I
e caeRem4.Crem_Contig0   860200 315 -  4500979 I

a score=0.000000
s ce10.chrX             3789575 76 + 17718866 CTCATTGAAAATTTGCTACTTCATTTCTAAAATAAAACATTTTGTATGACAAAATTATATTTTGAATACCCAATAG
e caePb3.Scfld02_0      2136713 551 +  4147112 I
e caeJap4.Scaffold18142   16760 373 -   343467 I
e cb4.chrX              8915863 47 + 21540570 I
e caeSp111.Scaffold630  5856155 229 + 20921866 I
e caeRem4.Crem_Contig0   860200 315 -  4500979 I

a score=-106.000000
s ce10.chrX             3789651 115 + 17718866 TTTATCA--TCATGTTTCA----ATTTCAAAATTATTATTCCAGATAAACAAATTTGAAAGTCACATGaaatttaataaattaaaaaaatgaatatttatttagttttaatcttattattC
s cb4.chrX              8915910  79 + 21540570 cttatcagttcatGCTCCATATTATTTCACAATTAtc--------taaataattt--------------atttttatcgAATGTACAAGTAAATAGTC--------------------TCT
i cb4.chrX              I 47 C 0
e caePb3.Scfld02_0      2136713 551 +  4147112 I
e caeJap4.Scaffold18142   16760 373 -   343467 I
e caeSp111.Scaffold630  5856155 229 + 20921866 I
e caeRem4.Crem_Contig0   860200 315 -  4500979 I

a score=3497.000000
s ce10.chrX             3789766 55 + 17718866 AAATAGTCTCTAACTACCAGCACGATTGA-------TT--GCTTTTT----------GATATACGT-----ACATAAGA
s cb4.chrX              8915989 43 + 21540570 ---AAATCTCTACCCGCCAAAAAGGTTAA----------------------------CAAACGAAA-----ACAAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   860515 72 -  4500979 AAATAATCTATGACTACCAGCAAATTTAAACGCACTTT--GCTCTCCAGCAATACACTAGAtgcaa-----aaaagaca
i caeRem4.Crem_Contig0  I 315 C 0
s caeSp111.Scaffold630  5856384 53 + 20921866 AAATAATCTCTAACTACCAGCCAGTTTAA-------TTGAGCT--------------TTTacacaa-----gaagaaga
i caeSp111.Scaffold630  I 229 C 0
s caePb3.Scfld02_0      2137264 56 +  4147112 AAAAACTCTATATCTACCAGCCAATTCAA-------TT--GCT--------------TTGAAACAATTTCCAAATAGCA
i caePb3.Scfld02_0      I 551 C 0
e caeJap4.Scaffold18142   16760 373 -   343467 I

a score=5993.000000
s ce10.chrX             3789821 34 + 17718866 AAAAC-CAATCAGTATAAATTATAAATGGAAACAT--
s cb4.chrX              8916032 21 + 21540570 TAAAT----------TAAATTGTGA----ACGTTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   860587 33 -  4500979 aaaatacaATCAGAATAATTTATAA--TGGAGCAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5856437 33 + 20921866 aaagagcaatCAGAATAAATTATAT--TGAAATGT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2137320 33 +  4147112 AAAAGACAATCAGAATAAATTATAA--GAAAACGT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   17133 34 -   343467 AAAAC-TagacaaaataaattacaA--ATAAAACTAC
i caeJap4.Scaffold18142 I 373 I 20

a score=3467.000000
s ce10.chrX             3789855 14 + 17718866 TTCCGCCCCTCCTC
s cb4.chrX              8916053 12 + 21540570 TCCCGGGTTCTA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   860620 14 -  4500979 TTCCGGGTTTAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5856470 14 + 20921866 TTCCGGGTTTTATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2137353 14 +  4147112 TTCCGGGTTTGACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   17167 20 -   343467 I

a score=42022.000000
s ce10.chrX             3789869 105 + 17718866 TAAGCCTTTGCGTACGAGTCGCCGTCCATTTGAGTGTCAGAGAATGCAGACAATGTTTT---TCCG------CTGTTTTTCTTCAAAAAATAATT--ATAAAGTAGCCTATTAAAT----------
s cb4.chrX              8916065  97 + 21540570 --AGCCTTCATGTACGAGTCGCCGTCCATTTGGGTGTTAGCGAATACTGATAACGTcttgttttca------atatttttctgaaaaatatgaattga-----------actacaa----------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   860634 102 -  4500979 CGAGTTTATGCGTAAGAGTCGCCGTCCATTTGAGTGTTAGAAAAAGCTGATGACGTCTTGCTACCACTGCTGctgcttttctgaaaattacaatt--------------atTACAT----------
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold630  5856484  97 + 20921866 TAAGCTTTTGCGTACGAGTCGGCGTCTAATTGAGCGTTTGAAAATGCCGATGATGCCTTACCACTG------CTGTCTCCCTGAAAAAGGCACCT--G-----------ATTAGAT----------
i caeSp111.Scaffold630  C 0 I 20
s caePb3.Scfld02_0      2137367  97 +  4147112 TAAGCTTTCGCATAGGAGTCGCCGTCCATTTGAGTGTTAGAAAACACTGATGAAGCTTTAGCACTG------CtggttttctaaaaaaggGGTTT--G-----------attgaat----------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142   17187  97 -   343467 TAGGCTTATGCATAAGAGTCGGCGTCCATTTGAGCATTTTCGAAGACTGAT-----TTT-------------atagttttctgaaaaattaagttttt-----------attGAATATTTCTGAAC
i caeJap4.Scaffold18142 I 20 C 0

a score=-5229.000000
s ce10.chrX             3789974 12 + 17718866 TGACAGAATAAT----
s cb4.chrX              8916172  2 + 21540570 ----------aa----
i cb4.chrX              I 10 I 5
s caeRem4.Crem_Contig0   860746  4 -  4500979 --------TAAA----
i caeRem4.Crem_Contig0  I 10 I 6
s caePb3.Scfld02_0      2137473  8 +  4147112 ----tgAGTTAC----
i caePb3.Scfld02_0      I 9 I 1
s caeJap4.Scaffold18142   17284  9 -   343467 -------TTAAAAAGC
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5856581 20 + 20921866 I

a score=559071.000000
s ce10.chrX             3789986  960 + 17718866  
s cb4.chrX              8916179  963 + 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   860756 1031 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5856601 1006 + 20921866  
i caeSp111.Scaffold630  I 20 I 11
s caePb3.Scfld02_0      2137482 1023 +  4147112  
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold18142   17293 1051 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-773.000000
s ce10.chrX             3790946 11 + 17718866 TTGCTACTACT
s caeJap4.Scaffold18142   18344  9 -   343467 AAATTG--GGT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2138505  8 +  4147112 I
e cb4.chrX              8917142  0 + 21540570 C
e caeSp111.Scaffold630  5857607 11 + 20921866 I
e caeRem4.Crem_Contig0   861787  0 -  4500979 C

a score=96638.000000
s ce10.chrX             3790957 220 + 17718866 ACTGAGAAATTCTTTGTTTTAAATTTTCTGGCACCTGAAGATTGGTGACACACGCATTTGTACACATTGGTCTACACTGTTGGGGGCACAATGAATATTGCTGTACACAAGATGGGGAGCATGATGGCATACACATTGAGTCACATCTTGGG---GCCGGGGGCTGCAATTTTTGGCATTTT----TCAATTTTTGAATTTCGATC------TGTATCATATCATTTTCTAT---A
s cb4.chrX              8917142 204 + 21540570 ---------------------------TGGAGACCTGGAGATTGGTGACACAAGCGTTGGTGCACATTGGGCGGCACTGTTGTGGGCACATTGAGTACTGTTGAACACAGGATGATGAGCAAGATGGCATGCACATTGAATCACATCGTGGGGGTGGTGGCATCTAAAAAT----AGAGCAAGGTTTTGCT-GAAAGTAGTTTGCTGAAAGAAAAAGGATTCAGTTTCCCATAaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   861787 191 -  4500979 ---------------------------TTGCAACCTGAAGATTTGTAACACATGCATTAGTGCACATTGGTCTGCACTGTTGTGGGCACATTGAGTACTGTTGAACACATGACGGAGAGCATGATGGCATACACATTGAGTCACATCTTGGG---GGtggcatctgaaaat----agattca----tcaat-caaaaatgtttccc------AAACCATTCCAATTTCCCATCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5857618 202 + 20921866 -----tttattatattCCTCCAGAATCAT-GAACCTGTAGATTTGTGACACAAGCATTGGTACACATTGGTCTACACTGTTGTGGGCATAATGAGTACTGTTGAACACATGATGGAGAACATGATGGCATACACATTGAATCACATCGTGGG---GGTggcatctgaaaat----agttttc----------caaAACGTTTTCTC--------ATCTGTGAAA---CCCATCACA
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0      2138513 215 +  4147112 -acgAGGTAATTTTTTCATCCGGAATTTTGGGACCTGAATATTTGTTACACAAGCGTTTGTGCACATTGGTCTACATTGTTGTGGGCACATTGAGTACTGTTGAACGCATGATGAAGAGCATGATGGCATACACATTGAGTCACATCGCGGG---GGTGGCatctgaaaat----acatttt----gaaatagaaaacttTCTCCC------AAAGCTATAAAA---CCCATCACA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18142   18353 200 -   343467 -TAtgtgaaattgaaaatttcaatttgctGTGACCTGAACGTTGGATACACATGCATTAGTGCACATTGGTCTGCATTGTTGCGGGCAAACAGAGTACTGTTGGACGCAGGATGGAGAGCATGACGGCATACAGATTGAGTCACATCTTGGA---CCAGGGGgctgaaaat----tgtttga----atATG-TACAACATAACATC--------ATTCATA---------------
i caeJap4.Scaffold18142 C 0 I 51

a score=-53.000000
s ce10.chrX             3791177 15 + 17718866 TTTTCCCATCACCCC
s cb4.chrX              8917346 15 + 21540570 tttttccattattta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   861978 15 -  4500979 TTTTCCCATTCAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5857820 11 + 20921866 TTattttatcg----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2138728 11 +  4147112 TTATTTTTTCG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   18553 51 -   343467 I

a score=266663.000000
s ce10.chrX             3791192 507 + 17718866  
s cb4.chrX              8917361 528 + 21540570  
i cb4.chrX              C 0 I 932
s caeRem4.Crem_Contig0   861993 522 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold630  5857831 493 + 20921866  
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      2138739 528 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   18604 533 -   343467  
i caeJap4.Scaffold18142 I 51 C 0

a score=-1.000000
s ce10.chrX             3791699 23 + 17718866 ttaaaaaataataata--ttGCGAT
s caeJap4.Scaffold18142   19137 25 -   343467 TAAATAAACTTTGACAGGTTTCCAT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2139267  0 +  4147112 C
e cb4.chrX              8917889 932 + 21540570 I
e caeSp111.Scaffold630  5858324 36 + 20921866 I
e caeRem4.Crem_Contig0   862515 45 -  4500979 I

a score=484.000000
s ce10.chrX             3791722 7 + 17718866 ATTTGGA
s caePb3.Scfld02_0      2139267 2 +  4147112 -----GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   19162 7 -   343467 GTTTAGA
i caeJap4.Scaffold18142 C 0 I 3
e cb4.chrX              8917889 932 + 21540570 I
e caeSp111.Scaffold630  5858324 36 + 20921866 I
e caeRem4.Crem_Contig0   862515 45 -  4500979 I

a score=-1466.000000
s ce10.chrX             3791729 133 + 17718866 ACGGGGATGCCACAAAACCTAAAAACCCAAGTATTCACAAATTCATCAGAAAAACTGGGCAAAATGAGATTTCCAAAAACTGTCAATTAGAAAATATGTGGGTTTGATGTTGTGAAACTAGTTCTAGGAATGT
s caePb3.Scfld02_0      2139269  43 +  4147112 A------------------TAcaaac-----------taaatt--------------------------tttctgaaaattgt-----------------------------------tgggTCTAGAAATGT
i caePb3.Scfld02_0      C 0 I 125
e caeJap4.Scaffold18142   19169   3 -   343467 I
e cb4.chrX              8917889 932 + 21540570 I
e caeSp111.Scaffold630  5858324  36 + 20921866 I
e caeRem4.Crem_Contig0   862515  45 -  4500979 I

a score=0.000000
s ce10.chrX             3791862 302 + 17718866 ACCTTTTTATTTCAGTACAATTACCCAATTAGATATGCATAGAAATTAATATAAAACTACAGTATATTCCCTATTAGTATGGTCCCTCCTCACTCGACTTTGACCCTTTATATCTCGCTTGTCTTCGATCATATTCAAAAATTCAAACGGGAAAATCTTTTTCGAATCTATCGTTATGCTCTGGTTTTTGAAAATATCAAAAATCTTCTGAAACCGCTAAAATATAAGCCGACAAAGTCGATTGGTGGGGGGGGGGGCCAAACTAATAGGGAATATACGGTATCTATTATCAAAACACTAAT
e caePb3.Scfld02_0      2139312 125 +  4147112 I
e caeJap4.Scaffold18142   19169   3 -   343467 I
e cb4.chrX              8917889 932 + 21540570 I
e caeSp111.Scaffold630  5858324  36 + 20921866 I
e caeRem4.Crem_Contig0   862515  45 -  4500979 I

a score=182.000000
s ce10.chrX             3792164 2 + 17718866 AT
s caePb3.Scfld02_0      2139437 2 +  4147112 at
i caePb3.Scfld02_0      I 125 C 0
e caeJap4.Scaffold18142   19169 3 -   343467 I
e cb4.chrX              8917889 932 + 21540570 I
e caeSp111.Scaffold630  5858324 36 + 20921866 I
e caeRem4.Crem_Contig0   862515 45 -  4500979 I

a score=753.000000
s ce10.chrX             3792166 2 + 17718866 TC
s cb4.chrX              8918821 2 + 21540570 TC
i cb4.chrX              I 932 C 0
s caeRem4.Crem_Contig0   862560 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 45 C 0
s caePb3.Scfld02_0      2139439 2 +  4147112 tC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   19169 3 -   343467 I
e caeSp111.Scaffold630  5858324 36 + 20921866 I

a score=179976.000000
s ce10.chrX             3792168 244 + 17718866 ACCTGAATACAATTTGATGAGCATGATGGCATGCACTGTGGAGCACACTCCGTCGGTCCTTGGATGGCGTTAATACAAGCTGGGAGACATAATGGCATACACTGCTGGTCACAAGATGGTCCCTATAA----------TATCTTTTTTA------GAGTATACTTTGAC--TAGAAATGATACCGATCTAACTAAATTTATACATGCTGAATCGCATTTTGGCATACATTGATCCACACAAACTGAGGTCTAAAACAAA--GAA
s cb4.chrX              8918823 250 + 21540570 ACCTGAATACAAGACGATGAGCAAGAAGGCATACATTGTGGAGCACATTCTGTTGGTCCCTGGATAGCATTAATGCATGCTGGAAGACAAAGTGGCATGCACTGCTGGCCACATGCCGGTCCCTACAACACATC---ATAAACCATACA------TATTCCTATTAAATGATCTC-----TACCGATTTCACCAAATTTATACAAGCTGAATCGCATTTTGGCATGCATTGCTCCACACAAACTGAGGTctaaaacaaaatgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   862562 250 -  4500979 ACTTGGATGCAAGACGATGAACAGGATGGCATGCACTGTGGAGCGCATTCCGTAGGACCTTGAATTGCATTAATGCATGCTGGAAGACAGAGTGGCATACACTGCTGGCCACATGATGGTCCCTGAAATGTTTCTAGTTatcttcttta------ttttatcATCGGAT--TCTA-----TACCGATTTTACTAGATTGATACATGCTGAATCACATTTTGGCATGCACTGTTCAACACAAACTGAGGTctaaaaccaaa-gaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5858360 245 + 20921866 ACCTGAATGCAAGACGAAGAACATGAAGGCATGCACTGTGGAGCACATTCCGCTGGCCCTTGGATAGCGTTGATACAGGCTGGGAGGCAAAGTGGCATACACTGCTGGCCACATGATGGTCCCTA-AAGTTTCGAGTTttaattct---------gtttcaaatt------ttcaagtgATACCGATTTCACTAGATTGATACAAGCGGAATCGCATTTTGGCATGCATTGCTCAACACAAACCGAGGTCTtaaacat---aaa
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      2139441 247 +  4147112 ACCTGTATGCAAGATGAAGAGCATGATGGCATGCACTGTGGAGCGCATTCAGCTGGTCCC---ATAGCATTGATGCATGCTGGAAGACATAGTGGCATACACTGCTGGCCACATGATGGTCCCTGTAATTCTCTACAATAAATCCTC--------GATCCCAATCAA----TTTATGTGTTACCGATTTCACTAAATTAATACAAGCAGAATCGCATTTTGGCATGCATTGCTCAACACAAACTGTGGTCTagaacata--aaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   19172 244 -   343467 ACTTGAACGCATGACGATGAACAAGACGGCATACACTGTGGGGCACATTCCATTGGACCCTTGATCGCATTGATGCAAGCTGGGAGACAAAGTGGCATACATTGTGGGCCACAAGATGGTCCCTGTAA-----------AATTGCTTTAAGAAGCAGGCCTACATTGGT--TATG-----TACCGATTTAACTAAATTGATGCAAGCGGAGTCACAATTTGGCATGCATTGTTCAACGCAAGTGGTGGTCTATAACAGA--AAA
i caeJap4.Scaffold18142 I 3 I 35

a score=-1601.000000
s ce10.chrX             3792412 21 + 17718866 AACACATATGTGCGATTGGAG
s cb4.chrX              8919073 20 + 21540570 aatgaac-tgAGAGAACTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   862812 20 -  4500979 aattaac-tgagattaaaata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5858605 18 + 20921866 aataaac-tgaataaaac--a
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2139688 20 +  4147112 aatgaac-ttatcgaaactta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   19416 35 -   343467 I

a score=79946.000000
s ce10.chrX             3792433 81 + 17718866 -GAAAATAACTAAAAACCTTAGCCATAACACAAGCTTGCGTGCACATTGGTTGACACCGATCGGGACAAGTGACCTTTAAAA
s cb4.chrX              8919093 81 + 21540570 -AGGGGTAACAAAGGACCTTGGCCATAACACAAGCTTGTGTGCACATTGGTTGACACCGTTCGGGACAAGTGACCTTTAAAA
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   862832 80 -  4500979 -aaaagcaacaaa-aaccTTGGCCATAACACAAGCTTGAGTGCACATTGGTTGACACCTATCGGGACAAGTGACCTTCAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5858623 79 + 20921866 -aagaa-aactaa-aacCTTAGCCATAACACAAGCTTGCGTGCACATTGGTTGACACCTTTCGGGGCAAGTGACCTTTAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2139708 79 +  4147112 -aaaaa-aacaaa-aacctttgCCATAACACAAGCTTGAGTGCACATTGGCTGACACCTTTCGGGACAAGTGACCTTAAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   19451 79 -   343467 aaaaaaaaaagaa-aaccttAGTCATAACACAAGCTTGAGTGCACATTGGTTGACACCGTTCAGGACATGTAACCTTGAA--
i caeJap4.Scaffold18142 I 35 C 0

a score=-7630.000000
s ce10.chrX             3792514 31 + 17718866 TAACAAAATAG---ACGGTGAAAGTTGTATTG-------------TG----
s caeRem4.Crem_Contig0   862912 29 -  4500979 -GTTGAAGTGAATAACGGTGAGAACTAT-----------------TG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5858702 31 + 20921866 -GTTGAAGTGA---ATTgcacaaaataaaaag------------gtg----
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2139787 24 +  4147112 -GTGGGAATGA--GGTTGTGCAAAA--------------------TG----
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   19530 48 -   343467 TAGCAATTTAG---Agtgtgaaaaacaaaacaaaaaaaaacgttatggtta
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8919174 30 + 21540570 I

a score=403584.000000
s ce10.chrX             3792545 584 + 17718866  
s cb4.chrX              8919204 610 + 21540570  
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   862941 574 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5858736 583 + 20921866  
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2139814 578 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   19578 566 -   343467  
i caeJap4.Scaffold18142 C 0 I 149

a score=-12508.000000
s ce10.chrX             3793129 95 + 17718866 GAAACATTTTTCATCGGGCTCTATTGATATAGTTAAGGGGA----------AGGAATATTCAGGGACAAGTGAAAAGACCAATGGAAGATTG----AATTTATGAAAAA-
s cb4.chrX              8919814 85 + 21540570 ------ttttatatcac---------aTATAATTTACGGAAAAGGATGTACGAGCTCAAGCAAAGACTATATCGAGTTCAGCTGAA----------GAACAACTGAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   863515 73 -  4500979 ------tcaTGTATCATA---TAAGGATATAATTAACGGCAGAA-------AAGTCCAACCAGGGACTA-ATAGA--------GAA----------AAACCA-TGAAGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5859319 88 + 20921866 ------TATATCATCACA---TAAGGATATAATAAAGGGAGT---------GAGTTCAATCAGAGACTGAATAATGTACAcg-gaaaa--tgttttaattcATAAAAGA-
i caeSp111.Scaffold630  C 0 I 160
s caePb3.Scfld02_0      2140392 69 +  4147112 ------CATGATATCGTA---GAGGGATATAATTAAGGAAT------------GTGCAA-------------AATGAGCCCGTGGGAG--CG----AAGTAAGGAAAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I

a score=-20755.000000
s ce10.chrX             3793224 162 + 17718866 ---CTGGCCGAATAAGTGGAACATTCGACACGTTAAATGATTGCTCAAATTGGCCAAATCATTTTTGAATCGGCATATTTTAATATTGTGTGACTTAAAAATTGACATTCCAATGCTTC------AAGGTTTCAACTATCTCTGGTGGTCATCAACTTTTGGTCTAAAAAA
s cb4.chrX              8919899 116 + 21540570 ATATGGAACGGATTTGGGG----------------------------AAATGGAGGT-TTAGTGTCGGAAT-----------------TGTTTcctgaatttaaattttgcagtagtttcaggaaaaaatgtgaa--aattcag-------agaacTGTTAATGCATAGAA
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   863588  54 -  4500979 -----GGGCGGACAAGTGG----------------------------GGATGGA----------------------------------------CTCAAGATGAA--------CATTTCCTGCAACAGGTGTCAA------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2140461 108 +  4147112 -CGTCGATCGAAGATTGGG--------------------TTTCCTCAGACTGCAGACAGTATAGTTTAGTT-----------------TCTCTGTTGAAAACGAATGC-----CACTGTGAAGCAAAGTTATAAC----------------ACATCTCCCAAGGCAC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I

a score=-2449.000000
s ce10.chrX             3793386 45 + 17718866 -----------TAAATGGAGGGTGTCATCAGAACTCAAAAAATACTCAAAACTCGC
s caeRem4.Crem_Contig0   863642 28 -  4500979 GTGCCAGATTctaaaacaggaaaaacat----------------------------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      2140569 45 +  4147112 -----------TAATTTGGGGACAACGTCCATTTTCAGTACctgtttgaaaattaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I
e cb4.chrX              8920015 48 + 21540570 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I

a score=-8500.000000
s ce10.chrX             3793431 102 + 17718866 ATTTTTTCAAGCATGACTC-----GGGTAATAACTCATTTCTCTACAGAATAAATTTATTAAAATGACA----TAAAACATTTGCAGTATATTATGAAGTGTTCAT-------TAAAA
s cb4.chrX              8920063  86 + 21540570 atgatatcaaacatctgtc-----aattgataactTATTT------ATCATTATTTTGGTGCTATTTTA----gcagac-----------------aattttttgatatctttcaaaa
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig0   863672  84 -  4500979 tttatgACGAAGGTTTTACGTTAAAAAGGTCAACATTGTT------AGAATAGCTTTTCAATCTTTATA----GAAAAC-----------------TATAGTTCAG-------CAAAA
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      2140614  70 +  4147112 -------------tttgca-----AATTGAGATCGTAATT------CGTTTCATTAATATGAAATTACAATCCGAGGAT-----------------GAAACTTCAT-------CAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I

a score=-459.000000
s ce10.chrX             3793533 4 + 17718866 GAAA-
s cb4.chrX              8920149 4 + 21540570 -gaac
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2140684 4 +  4147112 TAAA-
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I
e caeRem4.Crem_Contig0   863756 0 -  4500979 C

a score=-1505.000000
s ce10.chrX             3793537 101 + 17718866 ACAGAACAGTAGGTCCT--------GGCCGGGATCGAACCGGCGATCTTCTGCGTGTAAAGCAGACGTGATAACCACTACACCAC-----AGGACCACATGCCTTGCACATAGA
s cb4.chrX              8920153  93 + 21540570 cgagataattgagttcacaGTTAAAGGTTTAGGTAGA---------CTTCT--------ATTAGACGACGTA--CATTgtatcattttttgtgataaaatgTC--ACCCATACA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2140688 103 +  4147112 I
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I
e caeRem4.Crem_Contig0   863756   0 -  4500979 C

a score=670.000000
s ce10.chrX             3793638 5 + 17718866 CGGGC
s cb4.chrX              8920246 5 + 21540570 CGTGC
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0      2140791 5 +  4147112 CGAAC
i caePb3.Scfld02_0      I 103 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I
e caeRem4.Crem_Contig0   863756 0 -  4500979 C

a score=-27272.000000
s ce10.chrX             3793643 251 + 17718866 AGTGGTTTTCATCGGAAACAGAGAAGAACGGAACGTGTTTATTTTGTAGGTTACCAGTTGC----------TGAAAT----TTCTGACAGAAAGTTGGCA----CAGTGCTGCCAAGATTTTGCCAAGATCACTTAAGATTGCAGCTTGTCAAAAATAGCTAATCGTGAATATGATATAGAATGTGTGTATGCATTGTAAAATAAGTTTTCAGatattttaa----tattttatt-aatCGTGATCGTATTGAAAGATTTCCTAAATTTTTCTT
s cb4.chrX              8920252 157 + 21540570 CTTCgatctcaat----------------------------tatttcgattcaaaaatttcc---------agcacT----TTTTGACGGATCTTTTATAGTTCGATCTTACACAGGA--------------------GTTTTA--TAGTTAGAA----------------------------------ACGTATttagaaactgg----aaaaaacatttattaCAATCTAACATAAATATGGATAAATTAAAACAC----------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   863756 135 -  4500979 ATTGCTTTTCATT----------------------------AAATCCAGTTTATCAATAT-----------AAGAct----ttattacaaaaaatttccg----aaacgTTCAGAAG-----------------------TCAA--TGGCCAAA---------------------------------------CTTGAAATACCAA----CAAATACATTAA--ATGATTGAata-aataatacaaaaattaa---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2140796 159 +  4147112 AGAAATTTTCGATCG-------------------------GTATTTCAAGTAACATAGATACGTTGTATGGAATACTTTGCTTCCTTCAAATATTGTTTA----GATTGTTTGCAATATt-----agaaattctt--gatttta--ttGTTTAA----------------------------------------------TGTCAA----CAGGAAacttaa----aaattaatt-aaataTAATAAAATTG----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   20144 149 -   343467 I
e caeSp111.Scaffold630  5859407 160 + 20921866 I

a score=383857.000000
s ce10.chrX             3793894 669 + 17718866  
s cb4.chrX              8920409 643 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   863891 658 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 162
s caeSp111.Scaffold630  5859567 633 + 20921866  
i caeSp111.Scaffold630  I 160 I 89
s caePb3.Scfld02_0      2140955 639 +  4147112  
i caePb3.Scfld02_0      C 0 I 122
s caeJap4.Scaffold18142   20293 638 -   343467  
i caeJap4.Scaffold18142 I 149 C 0

a score=509.000000
s ce10.chrX             3794563 23 + 17718866 TAATCTAAAGAAATAAAATTGAG
s caeJap4.Scaffold18142   20931 21 -   343467 CAATCTTA--AATTAAACATGAG
i caeJap4.Scaffold18142 C 0 I 47
e caePb3.Scfld02_0      2141594 122 +  4147112 I
e cb4.chrX              8921052  0 + 21540570 C
e caeSp111.Scaffold630  5860200 89 + 20921866 I
e caeRem4.Crem_Contig0   864549 162 -  4500979 I

a score=-5650.000000
s ce10.chrX             3794586 471 + 17718866 ATTGTTAAAGAAGGTGTAACGGTTTCTATAATttttcaagcattttttatggcagtgtaaaatttcaaaaaaagagtccaatttatactagtatctccaattttgaccttttccgtctcgtacgggtccgaagttgagttttttgaattatcgtcattcattgcatattttgatcgttcatattacgttttttcgttggttgaggtacatttaagaccgatcggtaaccaattttaataatttttggttacatacagtttttggttacatattttaatcaacaaaataacgtgagataaatgatgaaaatatgcaatgaaggatgataactTTGATATAAATTATTAGCTTATATTTTCAAACGACTCATAACTGTTAGTAAAATTTAAACATTTTTTCAAAGTTTTCAATCATCAAAGTTTTCAACCCATGTCAAATACAAACTTTAACGTGAAGTACAATGTTCAAATT
s cb4.chrX              8921052 158 + 21540570 -------------------------------------------------TGGTAGTGTTAAGTTT--------------------------------------------------------------------------TTCCTGAATTGG--------ATTGAAtatt------------------------------------------------------------aaacttgaaaatttttc-----------tttttagtttCAGACACTAGT---------------------------------------------TGATCAATCCAAGGTACAATA--------------------------AACTG-------GATTCGAACATTATTTCAAAAC-----AGCATC-----TTTCAA--------AAAGCcaaact---------------attttcaaatt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2141594 122 +  4147112 I
e caeJap4.Scaffold18142   20952  47 -   343467 I
e caeSp111.Scaffold630  5860200  89 + 20921866 I
e caeRem4.Crem_Contig0   864549 162 -  4500979 I

a score=314.000000
s ce10.chrX             3795057 38 + 17718866 TTGATCCCTTTGTGCAAACACCTAGTACACGATAAGAA
s caePb3.Scfld02_0      2141716 30 +  4147112 TTGACCCTTTT-------CACCTATT-CTTGAGAgata
i caePb3.Scfld02_0      I 122 C 0
e caeJap4.Scaffold18142   20952 47 -   343467 I
e cb4.chrX              8921210  0 + 21540570 C
e caeSp111.Scaffold630  5860200 89 + 20921866 I
e caeRem4.Crem_Contig0   864549 162 -  4500979 I

a score=-4297.000000
s ce10.chrX             3795095 19 + 17718866 AAAGT--CAAAA-CCTTCACGC--
s cb4.chrX              8921210  2 + 21540570 ---at-------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2141746 21 +  4147112 aaaattgtaaaa-aagtTACGC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   20999 22 -   343467 AAACT--CAAGATATTTCATATCT
i caeJap4.Scaffold18142 I 47 C 0
e caeSp111.Scaffold630  5860200 89 + 20921866 I
e caeRem4.Crem_Contig0   864549 162 -  4500979 I

a score=61343.000000
s ce10.chrX             3795114 511 + 17718866  
s cb4.chrX              8921212 516 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   864711 530 -  4500979  
i caeRem4.Crem_Contig0  I 162 I 1
s caeSp111.Scaffold630  5860289 491 + 20921866  
i caeSp111.Scaffold630  I 89 I 71
s caePb3.Scfld02_0      2141767 534 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   21021 533 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-7506.000000
s ce10.chrX             3795625 33 + 17718866 TCAGCGGGATGTTCAATATTTGCAGCAATATTT
s cb4.chrX              8921729 26 + 21540570 CCAGGTCAATGTGTACTCTTTG-ATCT------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   865242 28 -  4500979 ACAGTTTGA----TATTCTTTG-ATCTATAATG
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2142301  6 +  4147112 ---------------------------ACAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   21554 33 -   343467 TTGGAAGGACAAGAATTTTGTATAGCGAGATTT
i caeJap4.Scaffold18142 C 0 I 157
e caeSp111.Scaffold630  5860780 71 + 20921866 I

a score=-5084.000000
s ce10.chrX             3795658 36 + 17718866 GTTGCAAGATTT-GTGTATGCGAATGTGCACAAAGAG
s cb4.chrX              8921755 27 + 21540570 ---CCGAATTTTCTTTTAAGCAAACcggaa-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   865270 26 -  4500979 ATGCCAGTTCTCAATGTTAGca----tgaa-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2142307 18 +  4147112 A--ACAA------TTGTTTGCA----tgga-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   21587 157 -   343467 I
e caeSp111.Scaffold630  5860780 71 + 20921866 I

a score=14581.000000
s ce10.chrX             3795694 146 + 17718866 CAAAAAATCAAAGGTTCTATTTGATTACACACACTT---GAAG--------ATTGGACTACACTCATTTG---------CTGCTCATCTTTGATTATCAACCCCCCCCCCCCACAAAAAATTCTTGAC-------------------TCATTGTTACT-----------TATTTAATTTTTTGCTC-GGCCTGGT--------GG
s cb4.chrX              8921782 162 + 21540570 caaaaaatcaaaagttctgTTTGAT--CATGcactt---caagctcaaaaaactaaactatACTTATCCAGCTTGTTGCTTGCTCATTACT-ATTTTTCCC-----------------ACTATCCCGT-------------------TCAttagaatcacaaaaattcctattcttatttttcatc-aaCTAGCTCATAGGTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   865296 168 -  4500979 caaaaaatcaagagtTCTTATTGAC--CTTGCTCTT---GACG--------ACCAAACTATATTCTCTAAGCATGATTCATGATCATC-----TCTTCATC-----------------AGTACCCCACCTTCCAAAAACTTGACGcattattaaaatt-caaaaactcttctctatttttctaccC-TTCCTGTAATAAAGGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5860851 155 + 20921866 caaaaaatcaaaagatctGTTTGGT--TATGCACTT---GAAG--------ATCGAACTATACTCATCAGGC-TGTTGCTTGCtcatctttgattttcttcttcct---------gaaactttttgac-------------------tca-------t-caaaaatgtttccacttttttctactcATCCAAAGTACAAATTGGA
i caeSp111.Scaffold630  I 71 C 0
s caePb3.Scfld02_0      2142325 159 +  4147112 caaaaaatcaaaagttctgTTTGAT--CTTGCACTTGAAGAAG--------ATCGAACTACACTCATCAA----GTAACATGCTCATCTGTGACTTTTTCC--CCC---------AAAGACAATTCAT-------------------TCACttgtatt-tcaaaactttcttaattttttctactC-CATGAAATACATTGTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   21587 157 -   343467 I

a score=46051.000000
s ce10.chrX             3795840 116 + 17718866 TAGTTCAAATAAACG---AAGCGG--AGCACAATACGGG-AATCCAGAATTGTA-TCGCGTGCAACTGTATACT-TTTGAGTTGAATTGGGAGAAGGTGGAAAA---------------AATGTCGCAGACTATATTTT
s cb4.chrX              8921944 133 + 21540570 TAGTTCAAATAAGACGGCAATCGGGAGA------GCGAGAAATCCAGAATAGTATTTGCGTGAAACTGTATACTTTATAAATTCGAttgaaaaaactcgaaaaaattggagttgggATGAATGGTGCAGACGGtttttt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   865464 113 -  4500979 TAGTTCAAATAATAGGGCAATCGG--GA------GCGAG-AATCCAGAATTGTATTTGCGTGAAACTGTATACTTTTGGAATTTGGGTGAGA-----TGAAAAA------------CCGCATGGCGCAGACTACTGTTT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5861006 111 + 20921866 TAGTTCAAATAAAAGGCCAATCGG--AG------GAGCG-AATCTAGAATTGTATTTGCGTGAAACTGTATACT-------ATTggtggaaaagaaatgaaaaa------------ctgcaTGGAGTAGACTGATGTTT
i caeSp111.Scaffold630  C 0 I 244
s caePb3.Scfld02_0      2142484 109 +  4147112 TAGTTCAAATAAAAGGCCAATCGG--AG------GCGAG-AATCCAGTATCTTATTTGCCTGAAACTGTATACT-------ATTGGGGGCAAGGAA--GAAAAA------------CCGCATAGGACAGACTTTTGTTA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   21744  89 -   343467 CAGTTCAAATGAAAAACGAGGCCA--AG------CGAAG-AATCCAGAATTATATTTGCGTGAAACTGTATACTTTTCGTATTGGAGTGCGG------AAAAAA-----------------------------------
i caeJap4.Scaffold18142 I 157 C 0

a score=558.000000
s ce10.chrX             3795956 39 + 17718866 GGCAACTCTGGCGGAGAAAAAGAGCTCGGATAAAGATCA
s cb4.chrX              8922078 29 + 21540570 CGCATGTTT----------TAGAGATCAAataaagttca
i cb4.chrX              I 1 I 10
s caeRem4.Crem_Contig0   865578 29 -  4500979 CCCAATTCT----------AGGAGATCGGCTAGAGATCA
i caeRem4.Crem_Contig0  I 1 I 187
s caePb3.Scfld02_0      2142596 29 +  4147112 CTCCGACCT----------CAGAGATCGGATAAAGATCG
i caePb3.Scfld02_0      I 3 I 269
s caeJap4.Scaffold18142   21833 21 -   343467 GGCGGCTTT----------TGCA--CCCAATAA------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5861117 244 + 20921866 I

a score=0.000000
s ce10.chrX             3795995 5 + 17718866 TATAG
e caePb3.Scfld02_0      2142625 269 +  4147112 I
e caeJap4.Scaffold18142   21854 0 -   343467 C
e cb4.chrX              8922107 10 + 21540570 I
e caeSp111.Scaffold630  5861117 244 + 20921866 I
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=-23844.000000
s ce10.chrX             3796000 627 + 17718866  
s cb4.chrX              8922117 509 + 21540570  
i cb4.chrX              I 10 I 99
s caeJap4.Scaffold18142   21854 483 -   343467  
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2142625 269 +  4147112 I
e caeSp111.Scaffold630  5861117 244 + 20921866 I
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=-1272.000000
s ce10.chrX             3796627 73 + 17718866 GAGTATTTAATGTAAAACTAGATCACCCTCCCCCCCCCCCCCTCCCAGCAA--ACTTTTGAGCTCATCCCAATGG
s caeJap4.Scaffold18142   22337 35 -   343467 GG----------------------------------------TGCCGGCGAGAATCTTTCACTTATTTCTAGCGG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2142625 269 +  4147112 I
e cb4.chrX              8922626 99 + 21540570 I
e caeSp111.Scaffold630  5861117 244 + 20921866 I
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=73.000000
s ce10.chrX             3796700 24 + 17718866 TCTGAAAACACGCATAATTCGAAA
s caePb3.Scfld02_0      2142894 19 +  4147112 tttaaaagtaTACATATTT-----
i caePb3.Scfld02_0      I 269 C 0
s caeJap4.Scaffold18142   22372 22 -   343467 --CAACACTGcccataataaaaaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8922626 99 + 21540570 I
e caeSp111.Scaffold630  5861117 244 + 20921866 I
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=-269.000000
s ce10.chrX             3796724 2 + 17718866 A--C
s caeJap4.Scaffold18142   22394 4 -   343467 aaac
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2142913 0 +  4147112 C
e cb4.chrX              8922626 99 + 21540570 I
e caeSp111.Scaffold630  5861117 244 + 20921866 I
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=-664.000000
s ce10.chrX             3796726 6 + 17718866 GTTCCT
s cb4.chrX              8922725 6 + 21540570 gttttt
i cb4.chrX              I 99 I 4
s caeSp111.Scaffold630  5861361 6 + 20921866 GTTAGC
i caeSp111.Scaffold630  I 244 C 0
s caePb3.Scfld02_0      2142913 6 +  4147112 GTTCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   22398 4 -   343467 attc--
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   865607 187 -  4500979 I

a score=289255.000000
s ce10.chrX             3796732 482 + 17718866  
s cb4.chrX              8922735 545 + 21540570  
i cb4.chrX              I 4 I 5
s caeRem4.Crem_Contig0   865794 492 -  4500979  
i caeRem4.Crem_Contig0  I 187 I 5
s caeSp111.Scaffold630  5861367 498 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2142919 489 +  4147112  
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18142   22402 421 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-4171.000000
s ce10.chrX             3797214 28 + 17718866 CTGTGTCACTACATTCACGT----ATTGTTGA
s cb4.chrX              8923285 31 + 21540570 cga-aTGGATACAGTCACGTAGAAAGTTTTAA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   866291 28 -  4500979 tggttTTGCTATACTCACGT----TATTTTAG
i caeRem4.Crem_Contig0  I 5 I 7
s caeSp111.Scaffold630  5861865 24 + 20921866 cagttttcctaCAGTCACGT----ACTC----
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   22823  9 -   343467 ---------TACATTTGG--------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2143408 13 +  4147112 I

a score=-131916.000000
s ce10.chrX             3797242 309 + 17718866 AAACTATAACGGATATATTACAAGACGGTCTAGACAAAAATTGGG-----AAAAAAAGCTC----TACT--GAAAATG-------GGATATT-------------AAACTACTACCTTTCAGAAATACTTTCAGAACAATATTACTTGATACAAAAGAAAGATCTT--CAAAATAGCT---TGCTGGTACTCCAACTAAAAAGA-TATAATAATCAA--------TTTTTTTTTTACAAATCGGT---------------------------GCAAAATAGTCGTT----CGTTTACTAGTCATGCTTT-----------------------GAAAAA-----ATTTAAGCTTAACA-------ATGCAACCTAACCTCGATTTTTTTCAAAT---------TAAATTACAATTTCAAATGAGAATAAA
s cb4.chrX              8923316 295 + 21540570 ---ATACAGTAGCAAAG----AAGAT--------CGGAAACATTTTGCGAAcagacaatt------------caaaaa-------agagacG--------ATTCGGGAGTATAAATTTTTCCCTCTG----------AATAATATCGATCAAAAATGGACAAATCT--TCAAGCAA------GTCGGT-----TTCAAAAGGGC-TAAAATCATACA-------------TGTCAACCAAGCACC---------------------------AAGACAACTACAAT----CCTTTGCaaaaca--ctttgaaaacttggaattccTTTTTAATCAGAA-----AGTCAAACTCACGA-------GATCTGGGTAA-TTATATTTGAATGAACT---------TAAACTCATTTTCTGCCTGAGATTTGA
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig0   866326 169 -  4500979 ---GTACGGCAGTAAAG-----------------CAAAAACACTT-----ACAAGAAACT------------AACAGA-------AGATATT-GTAaaacatatgaaaaaataactttatgGGACTG----------GAGAAC--------AAACTCGACAGAAT---------------------GT-----TTCAGAGATAT-TGCAATAAAATA------------------------CACA---------------------------TAAAAATCAACAAC----TTTCAGGAAAAC------------------------------CAAGAA-----AGTTga--------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  5861889 223 + 20921866 AGAATACAACAGTTA-------------------CAGTA--GGAT-----ACCAAG----------------AAGAGGAATTTTCGGAGATG-------------ATGActaatttatttgaaatta----------aatggA---AGTCAAACATAGAAAAGATA--TGAACTa-----------gtg----aataagaaaat-taaaagtcGGGA--------------TACCACAAAGAACAGCTTCAAATGAGTTTTTACGAGtgcaaaacagaaaaataataagatCTCCAGA----------------------------------GCGGCATAAGCCACCAAACTGTAAA------------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143421 176 +  4147112 ---AAGCTACGGATAG------------------AAGTA-CGGCT-----ACAAAAATCC------------AAGAGG-------GGAggtc-------------aaagaaaaactattgGCAAGGA----------GATACA------CAACTTTGGAATGTTTG--gagaaca-----------gt---------aaaaatt-tacaATTATGCA--------------AACAacaaatgactg--------------------------aaaaaaaaaataat----tttttaat----------------------------------gaagaa-----aaccaaaaactcaa------------------------------------------------------------------------
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18142   22832 300 -   343467 ----------------------------------------TAACT-----ACAAATACGTTAGAATACTGGGAAAATA-------AGAAGCACATTGTAATTGGAAAGAAACAATAATGTCCAAGTA----------CATAca--taaatagaaatggcaaagTTGAATAAACTGGttttatgtttgt-----aataaaGACTTGTGAAATcttcgaaattttattttttttttaatgcataaAAGCTGTTGGTCGGCCAG-----------GCGATGTTGATGTT----CCTCGGCC----------------------------------GCTGCC-----ATCTGGTCTTGCAACGACGAGatgcagagaaaaatgcagtttttccagattttcgcGACTGAAATCATCCAATAAATGAG------
i caeJap4.Scaffold18142 C 0 C 0

a score=-12278.000000
s ce10.chrX             3797551 66 + 17718866 GAGAACCTTCTACAACTTGAACATTCTGTGAACTATTGG--AAAACACTGGACATTGAATGAAACAAA
s caeRem4.Crem_Contig0   866495 61 -  4500979 gagaaattttca-agacaAAATA----GTGTGCATATCG--GGACAAAGTGATATCCAGATAGTCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5862112 50 + 20921866 -------------AAATGGATCG----AAGACTATTCGCCTGGGGAATCC-ATGTCGATTATTGAATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143597 49 +  4147112 -------------aacctgAACA----GTGAACAGTTgc--gaagaatttgaaatttgtcaatgcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   23132 52 -   343467 ------------TAATATGAATACTCGGTGT-TACGCGC--TGGCCGTGC-ATTTTGAGTGAAATGAA
i caeJap4.Scaffold18142 C 0 I 154
e cb4.chrX              8923611 117 + 21540570 I

a score=-5515.000000
s ce10.chrX             3797617 36 + 17718866 AT---TTTTAAACATTCACATTTGCGACGTTGGGCCGTT
s caeRem4.Crem_Contig0   866556  5 -  4500979 TTTCA----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5862162  2 + 20921866 TT-------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143646  2 +  4147112 ct-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   23184 154 -   343467 I
e cb4.chrX              8923611 117 + 21540570 I

a score=-30395.000000
s ce10.chrX             3797653 105 + 17718866 ATTTATTGTCTCGAAAGAGGAAAAAAATGTCTGACAAATT--------------------GGAAAAGTACAGTAGATTCA------ACTGTCA-----CACTTTTTTGTAAAGTAGGGCCTAAAATTAGTAGACTC
s cb4.chrX              8923728 130 + 21540570 atttaatggaCGAAAAGAAacagagattttcagattattgagaattggaaaagttatcgaaaaaaaacatctacCGCCAATAAATATCTGGAA-----CACCTAATTAATAAATAGAGAACACAACTGG-AAACTC
i cb4.chrX              I 117 I 169
s caeRem4.Crem_Contig0   866561  68 -  4500979 ATCTA-----------------------TGCAG------GAGAGCTG-------------AAACAAATATATGCGGTCAA-------CCAGAT-----GACATATTT------TGGTGTACAAGCCTA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5862164  46 + 20921866 -----------------------------------------------------------------GAAACTTATAATCAA------ACTGCAAG----GATGGAATTGTC----ATAGTAAAAGC-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143648  57 +  4147112 ------------------------------------------------------------agaaaaaaattgatga--aa------actgTAAGCAGTGCTCTGATTTTCGAGAATACAACAcgt-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   23184 154 -   343467 I

a score=-10683.000000
s ce10.chrX             3797758 76 + 17718866 GAGTTTTGAATTGGTGAGCCAATATCTCTCT----------TGACACAATTGAAG--------TGTTTTTAAACTGGTTAGAAGAC--TAGACTGA
s caeRem4.Crem_Contig0   866629 44 -  4500979 -----TTGAT----------AACACCAGTAA-----------AAAACAGGTTGCA---------GTTTCAGTA--------TACAC--C-------
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  5862210 54 + 20921866 --TACTTC-------------ACACTCCTAC-----------GGTAcagttttca--------tatttctcga--------gaaactATACTGTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143705 74 +  4147112 --tttttcca----------aatacttctTCCAATATGGACTGAAACAGTGTCCAGTCTTAagtctttcttca--------aaaac--tactgTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   23184 154 -   343467 I
e cb4.chrX              8923858 169 + 21540570 I

a score=-3188.000000
s ce10.chrX             3797834 21 + 17718866 AATATATTATAGCTAACATCA
s caeSp111.Scaffold630  5862264  4 + 20921866 AATA-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143779  4 +  4147112 ATCA-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   23338 16 -   343467 -----AACATATTGAGCGTCA
i caeJap4.Scaffold18142 I 154 C 0
e cb4.chrX              8923858 169 + 21540570 I
e caeRem4.Crem_Contig0   866673  9 -  4500979 I

a score=375171.000000
s ce10.chrX             3797855 607 + 17718866  
s cb4.chrX              8924027 620 + 21540570  
i cb4.chrX              I 169 C 0
s caeRem4.Crem_Contig0   866682 597 -  4500979  
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5862268 582 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2143783 569 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   23354 624 -   343467  
i caeJap4.Scaffold18142 C 0 I 122

a score=91757.000000
s ce10.chrX             3798462 159 + 17718866 CACAGCAGCAGCAGCCTGCGTGCAACTGTGCTCCAGTTCAGCAAGATCCATGTGCTTGCCA-----GCCACAACAG----CAG-------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCGGCTTGTAACTGTGCTCCAGTTCAACAA---GATCCATGC----------------------------GCCTGC--CAGCAACAGCAACCATCCTGCGATTG-------------------CGCTCCAGTT--C
s cb4.chrX              8924647 250 + 21540570 -----CAGCAGCAGCCTGCTTGCGACTGTGCTCCAGTCCAACAGAACCCATGTGCTTGCCA-----ACCAGCTCAG----GTA--------TTTTTA------------------------CTAGTTTTGAG--------------------------------------------------------GATAGTTAAAAC------TGagagtttcat------------ttttcagccagcCTGTGATTGTGCTCCAGTTCAACAA---AACCCATGCTGCCAACAAGCTCAACCATCCTGCGACTGCCAGCCACAACAGCAACAGCCAGCCTGCGATTGTCAACCACAACAGAATCCATGCGCTTGCCAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   867279 308 -  4500979 --AAGCAGCAGCAGCCTGCTTGCGACTGTGCTCCAGTTCAGCAGAACCCATGTGCTTGCCA-----ACAAGCTCAG----GTAAACGTTATTTTTTAGGGCGATGATCtaaaaatt---tcttgatttccagCCAGCATGCGATTGCGCTCCAGTTCAACAACAGCCTTCCTGCTGCCAACAAGCTCAGGTAATTTTAATAAGCTATAACAGCTCCATCagttaaaaacatttttagccAGCCTGTGACTGTGCCCCAGTTCAACAACAGAACCCATGC----------------------------GCTTGC--CAACAGCAACAACCAGCTTGCGACTG-------------------TGCTCCAGTC--C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5862850 200 + 20921866 --CAGCAGCAGCAGCCTGCTTGCGATTGTGCCCCAGTCCAGCAGAACCCATGTGCCTGCCA-----GCAAGCTCAG----GTA------ACTACTCA--------------------------AATCTTTCG------------------------------------------------------------------ACAGATTCtgattattcttt-------------ttccagcCATCATGCGATTGTGCTCCAGTTCAGCAACAAAACCCATGT----------------------------GCTTGC--CAGCAACAACAGCCATCCTGTGACTG-------------------TGCACCAGTC--C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2144352 200 +  4147112 --CAGCAGCAGCAGCCTGCTTGCGACTGTGCCCCAGTTCAGCAGAACCCATGTGCTTGCCA-----ACCAGCCCAG----GTA--------TTATGA--------------------------ACCTAATAG------------------------------------------------------------------ACtcaattctataaattttc-----------ggtttcagccAGCCTGTGATTGCGCTCCAGTCCAACAACAAAACCCATGC----------------------------GCTtgc--caacaacaacaaccagcCTGTGACTG-------------------CGCCCCAGTC--C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   24100 201 -   343467 tataGCAACAACAAACATCCTGCAACTGTGCTCCAGTTCAACAGGACCCATGTGCTTGCCAGGTATACCATTTCAGGGTCGTA--------TTGCTA--------------GCATTGAATCTTATTTTTTAG--------------------------------------------------------------------------CAACAA----------------------GAACCATCGTGCAACTGTGCTCCAGTTCAGCAA---AACCCATGC----------------------------GCTTGC--CAGCAAGAGCAGCCAGCCTGTGATTG-------------------CGCTCCCGTC--C
i caeJap4.Scaffold18142 I 122 I 57

a score=20980.000000
s ce10.chrX             3798621 40 + 17718866 AACAGCAACCAGCCTGTGACTGCCAGGT------AGGCTGTTAAT-G
s cb4.chrX              8924897 39 + 21540570 AACAACAACCAGCCTGCGATTGCCAGGT------ACACTGATAAC--
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   867587 40 -  4500979 AACAGCAACCATCCTGCGACTGCCAGGT------GAGCTGACAACA-
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold630  5863050 36 + 20921866 AACAGCAACCATCCTGCGACTGTCAAGT--------ACTGATAA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2144552 37 +  4147112 AACAGCAACCATCTTGCGATTGCCAGGT--------ACAGTTGAT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   24358 40 -   343467 CTCAGCAACCAGCCTGTGACTGCCAAGCCAACCCATCCTG-------
i caeJap4.Scaffold18142 I 57 C 0

a score=-830.000000
s ce10.chrX             3798661 11 + 17718866 TAAGAGCGA---CG
s caeSp111.Scaffold630  5863086 10 + 20921866 ----AGCTAAGGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2144589  7 +  4147112 ----AACTA---TG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   24398 11 -   343467 CGTGACCTG---CA
i caeJap4.Scaffold18142 C 0 T 108
e cb4.chrX              8924936  2 + 21540570 I
e caeRem4.Crem_Contig0   867627 19 -  4500979 I

a score=-69.000000
s ce10.chrX             3798672 1 + 17718866 A
s caeSp111.Scaffold630  5863096 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2144596 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   24301 1 -   343467 A
i caeJap4.Scaffold18142 T 108 C 0
e cb4.chrX              8924936 2 + 21540570 I
e caeRem4.Crem_Contig0   867627 19 -  4500979 I

a score=562620.000000
s ce10.chrX             3798673 1047 + 17718866  
s cb4.chrX              8924938 1001 + 21540570  
i cb4.chrX              I 2 I 1
s caeRem4.Crem_Contig0   867646 1072 -  4500979  
i caeRem4.Crem_Contig0  I 19 I 2428
s caeSp111.Scaffold630  5863097 1023 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2144597 1039 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   24302 1033 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-5614.000000
s ce10.chrX             3799720 16 + 17718866 ATATTAT-----TTCCTTTTA
s cb4.chrX              8925940 21 + 21540570 aattcattcaaatttttgtta
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   871146 16 -  4500979 aaattgt-----tttttttta
i caeRem4.Crem_Contig0  I 2428 I 17
s caeSp111.Scaffold630  5864121  5 + 20921866 A---------------TATA-
i caeSp111.Scaffold630  I 1 I 1
s caePb3.Scfld02_0      2145637 15 +  4147112 agttcat-----attttttg-
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18142   25335 13 -   343467 ---tcat-----ttcatttca
i caeJap4.Scaffold18142 C 0 C 0

a score=-23703.000000
s ce10.chrX             3799736  62 + 17718866 CACAATGAGTATATGCAATGA-AGATATAAATGAAAAAATGA------------------------------------------------------------TTAAGAATCATTTCTATGATG
s cb4.chrX              8925961 120 + 21540570 tggAATGGGTGGTTCCA--GA-GGTGAGAATTTGGAACATGAGACCTGCTACAAATGAGAACTAGGAAATGAGCACTCAGTTTACCGGCTCTAGTTACCGGCCTAggaaccaattttttagaa
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630  5864127  27 + 20921866 caaaatgcttttttt---------------gttagaaTATGA---------------------------------------------------------------------------------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2145653  29 +  4147112 tttggTGACTCTTTC---------------AATGCAATATcaag-------------------------------------------------------------------------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   25348  58 -   343467 cgcgtTTGTTCTTTTATTTAACAGTTTCTAGTTTTAAAAAGAGA----------------------------------------------------------TCAATAAATAACTA-------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   871162  17 -  4500979 I

a score=-40290.000000
s ce10.chrX             3799798 87 + 17718866 TTCAAATTACCAATTTTCGTCTAAATTACAACAAAATCACTGAAAAAGATTTGA---------------------------------GAAAA-ATGCAATTTTCTTTTAGGAAAC--TCTATT
s cb4.chrX              8926083 74 + 21540570 ----------cTATTATCGAAATGGTT-----TTGTTCTTCACAATactttaag----------------------------atttttgaaa-aaaaaatcccggTTT---GACC--TATATT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   871179 45 -  4500979 --------------------------------TTCAATTTCACAATTCATTGCA-------------------------------TTTAAAT-CTACAAT------------ACc--tatact
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold630  5864154 47 + 20921866 ---------------------------AC-acatcattt-caaaaaggaattca-------------------------------ttgaaat-ctataaa-----------aact--aaaa--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2145682 66 +  4147112 ------------ttcatcaaaaacattac-ACATGTTCTGCAGGAAATATTTTA-------------------------------TCCAAATGCTACAAA-----------AACCtataca--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   25406 81 -   343467 -----------------CAAAAAAGCTAT---ttaattgtaaataaataagtgAAAATGCTGAGGGAGAGAAAAAGATCTCCACTTCGAAACGTTACAATT----------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-1428.000000
s ce10.chrX             3799885  4 + 17718866 TGAA---------------
s cb4.chrX              8926157 19 + 21540570 TTACGAGTTCTTATTTGTA
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   871224  4 -  4500979 ttaa---------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2145748  0 +  4147112 C
e caeJap4.Scaffold18142   25487  0 -   343467 C
e caeSp111.Scaffold630  5864201  0 + 20921866 C

a score=-289.000000
s ce10.chrX             3799889 37 + 17718866 GTTTGAAAACCAGAAGATTTTCACAAAGGGTTGGTTC
s caeSp111.Scaffold630  5864201 15 + 20921866 atttgaaaattggca----------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2145748 14 +  4147112 ctttgaaaattagc-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   25487  0 -   343467 C
e cb4.chrX              8926176 48 + 21540570 I
e caeRem4.Crem_Contig0   871228  0 -  4500979 C

a score=-40658.000000
s ce10.chrX             3799926 239 + 17718866 TATCATTATCTAA------AACAGCAATCGTAGAAGAGATTTGAGAGTTTTCTTCAAAACTAAACTTTTTATATTGTGTTCAATATTGTTAACGAATTTTTGATCTTTAAATTTCCCATTTATTTTAAATCTAAATAAC-CTATAC--------------AATAATAAGCGCATTTGAGGAGTCAAATA--------------------------AATAGACACATTTCAATTGAGATCTTCCACAATAAATAA----GACACCTTACTAAAA---CATTTTTGGCA--CATGAA
s cb4.chrX              8926224 281 + 21540570 TACCACCATGTAATGCTCCAGAGACAGTCATACagcaaactt-----ttttcgaaatttcaaagtttttttaaaaggatGAACTTTTCCTAGtccatttctgattt-----ttcttcattcaaaTTTGTCGAACACTTT-CTTGAcatttgttcattttgaaaatctagagcACCTATACAATTAAATAGAAGAAGGAATGGCAAACATAAGTGAAtagaaaattttgcagaagAGATCTTTtat-ataaattattttttttcactactACAATACATTTTTTGGCA--CATGAA
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig0   871228 109 -  4500979 -------------------aaaaa---------------------------cggAATGGCAA---------AAAAGAGTTAAGT----------------------------------------------GAAAACAAT-ACAAAC--------------GAGATCT---------------TCAAATA---------------------------------------------------TTGAG-ATAAATCA---TGGTACAATACTATTATCAAACTTTTGGCACGCAGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5864216  92 + 20921866 -------------------------------------------------------ATGG--A---------TACAGATCTAAGT----------------------------------------------gaaaacaccaaaaaat--------------gagatca---------------CTAATTC----------------------------------------------------TCAT-GAGATTCA----GTTACAATACTATTG---ACTTTTTGGCA--CAAGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2145762  72 +  4147112 -------------------------------------------------------------------------CCACTTTAAGT----------------------------------------------GAAAACAAT-ACAAAC--------------GAGATCT---------------CGCATTT-------------------------------------------------------------TTCA----GTTACAATACTAT-------TTTTTGGCA--CAAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   25487   0 -   343467 C

a score=119392.000000
s ce10.chrX             3800165 149 + 17718866 CAAAGTACTAAGACAATAAATTAATGAATGCAGCGT---------------------TTCTAGAGCAGCTCAATATAGCTGACAGGCAATTTTCCGCGTTTTCCTCCTTTTTCAGCCATCACATATTCCGCATCCATTCCAGGAAGGCGATACACGATGAGAATCTGCAA
s cb4.chrX              8926505 149 + 21540570 CTGAGATCTACTTCAATAAATTAGGTATCATCGTTG---------------------TTTCAGAGCAGCTCAATGTAGCTGACTGGAAGCTTTCCACGCTTTCCTCCCTTCTCAGCCATCACATACTCGGCATCCATTCCGGGAAGACGATACACGATGAGAATCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   871337 146 -  4500979 CATTTATCTATAGTAATAATTTAAGT------GTTG------------------AATATTCAAAGAAGCTCGATGTAGCTGACCGGCAGCTTCCCACGTTTTCCTCCCTTCTCAGCCATCACGTATTCTGCATCCATTCCGGGAAGGCGATACACAATGAGAATCTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5864308 146 + 20921866 CAGAGATCTAGAGTAATAAGTTAATTTTAATG------------------------CATTTAGAGCAACTCAATGTAGCTGACCGGCAGCTTCCCACGTTTTCCGCCCTTCTCCGCCATTACATACTCAGCATCCATTCCGGGAAGACGATACACAATGAGAATCTGCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2145834 149 +  4147112 CAGAGAtctaaaataataaa-taatttaaatAGTTT--------------------TGTTCAAAGCAACTCGATGTAGCTGACCGGCAGCTTTCCAcgttttcctcctttttcagCCATTACGTACTCAGCATCCATTCCGGGAAGGCGATACACAATGAGAATCTGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   25487 162 -   343467 --------CAAAACAGTAAAATAATTATGAAAATTGGCAAATAAATAATTCTAAAGTTCTTAAAGAAGTTCAATGTAGCTAACTGGAAGCTTTCCACGTTTGCCACCTTTCTCAGCCATCACGTACTCGGCATCCATTCCAGGGAGGCGGTAAACTATGAGAATCTGAAA
i caeJap4.Scaffold18142 C 0 I 449

a score=-1587.000000
s ce10.chrX             3800314 49 + 17718866 CAAG------------------AGCAG----------ACGTAATTTCACACAATATTTGGTTTC-AA--------TAGGGG------------TCCTC
s cb4.chrX              8926654 78 + 21540570 TAAGTGGTGTTTCTTTCACTCTCTTGA-GATTGTGAGACGTCATTTCACACCAGGtttggtttt-aa-aattgaagaagGA-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   871483 86 -  4500979 GAGG-----------ATACCAAATTGATGGATGATTTACGTCATTTCACACAATATTTGGTTTCGAA-AACAGAAGAAAGGGAAAACCAAAACGTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5864454 59 + 20921866 GAAG---------------TTTCTTGT----------ACGTCATTTCACACCATATTTGGTTTC-AATATCCGGAAATCAA------------AGC-T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2145983 56 +  4147112 AA------------------TTCCCGT----------ACGTCATTTCACACaatattcagtttc-aa-aaacggaAATCGA------------AACGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   25649 449 -   343467 I

a score=153276.000000
s ce10.chrX             3800363 479 + 17718866  
s cb4.chrX              8926732 423 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   871569 575 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5864513 541 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2146039 531 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   26098 570 -   343467  
i caeJap4.Scaffold18142 I 449 I 141

a score=-40876.000000
s ce10.chrX             3800842  92 + 17718866 GAGAGTAAGAAGAA----AAAAATTAAACA---------------------TACT---------AA----------TTATGCTTA---------------------TCGATTGGT---------GGAAATGA----------------------CCGGGAGCTGTTAAAATA----TGAAATACA----------TTACAAT
s cb4.chrX              8927155 140 + 21540570 aaagatggaaaaga----agaaaatatacACAAAC-----ATCCGA-----AAATGGGTCATTCAATCGACTAtaattacgctaaaattaaaaacaataattacgctaaaattaaa--------atcaaata----------------------CCGGGC-AGGATAAGGGA----TGCTACATA-------------CAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   872144 105 -  4500979 aattatataaagt---------CATACacacaaa------atctga-----aaat------ttgaa------atggtCATactaa---------------------taaaacaaaa--------agtgaata----------------------cCGGGC-AGGTTAAATGATTTCTATGATACA-------------TAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5865054  84 + 20921866 aacaataCAGTA----------ATTATGCACAG------------------AACT---------AA-----------------AT---------------------AAGAACAAAA-------TAATAAGTA----------------------CCGGGAGAAGATAAGAGA----GAATATACA----------TTGTTGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2146570  98 +  4147112 ---AATTAAGTA----------ATTATGCACAGAA-----ACCTGA-----AACT---------AA----------------CAG---------------------AAGAACATAA--------AGTGATTA----------------------CCGGgc-aaaataagaaa----taataTACATAATACATCGTTGTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  312216 144 +   343467 GGGCATGAAACGAGgatcagcaaacgcgcccgggcgTGTTTTCTGACTCCCAGTT---------AA-----TGCCCCTGTGTGAA---------------------TACTACAAACTGGGATTTAATAATTATGTATGCACAAAGATTATGGTTTTGGAG-ATATCAAAAGA-----AGAACAAA-----------------
i caeJap4.Scaffold18142 n 141 I 2615

a score=297743.000000
s ce10.chrX             3800934 1045 + 17718866  
s cb4.chrX              8927295  945 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   872249 1054 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5865138 1010 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2146668  957 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   26809 1054 -   343467  
i caeJap4.Scaffold18142 I 141 I 4159

a score=-1727.000000
s ce10.chrX             3801979 52 + 17718866 A--------------------TGGCGCA---------GC--------------------TGGCCTGAGGGCAAGAATAATTTGAAATGCATTTACTAAATT
s cb4.chrX              8928240 54 + 21540570 A--------------------TGGTGCATAGG---------------GAGAGGGCGCAATGGCCTGAGGGCAC---CAATCGGATATGCATT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   873303 75 -  4500979 A--------------------TTGCCAATAGACTATTGCCCTCCAGtaataaattcaaattgccTTAGGG------TGATTTGAAATGCATTTAACGAATT
i caeRem4.Crem_Contig0  C 0 I 76
s caeSp111.Scaffold630  5866148 87 + 20921866 AGCTCTTTGGCCTC-------TTAGAAAAAGGTTACGGC-GCCGGATAATAAATCTAAATGGCCGCAGGGCACAATTG------AATGCATTTTATAGATT
i caeSp111.Scaffold630  C 0 I 37
s caePb3.Scfld02_0      2147625 99 +  4147112 AGCAGTCCAGTCTCagttcagccaaaaaaagggTATAGC--CTGGGTAATAAATCTAAGTAGCCCTAGGGCACGGCTGATCCAAAATGCATTTAATAAATT
i caePb3.Scfld02_0      C 0 I 46
e caeJap4.Scaffold18142   27863 4159 -   343467 I

a score=0.000000
s ce10.chrX             3802031 8 + 17718866 TTTTTAGC
e caePb3.Scfld02_0      2147724 46 +  4147112 I
e caeJap4.Scaffold18142   27863 4159 -   343467 I
e cb4.chrX              8928294 0 + 21540570 C
e caeSp111.Scaffold630  5866235 37 + 20921866 I
e caeRem4.Crem_Contig0   873378 76 -  4500979 I

a score=-507.000000
s ce10.chrX             3802039 29 + 17718866 AAGAGCTCATGAATAGTGCAGCTTGGAAA
s cb4.chrX              8928294  3 + 21540570 --------------------------AAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2147724 46 +  4147112 I
e caeJap4.Scaffold18142   27863 4159 -   343467 I
e caeSp111.Scaffold630  5866235 37 + 20921866 I
e caeRem4.Crem_Contig0   873378 76 -  4500979 I

a score=-113.000000
s ce10.chrX             3802068 10 + 17718866 AGAGGAGTCT
s cb4.chrX              8928297  4 + 21540570 -----AGCC-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2147770 10 +  4147112 AGTTGAGTCT
i caePb3.Scfld02_0      I 46 C 0
e caeJap4.Scaffold18142   27863 4159 -   343467 I
e caeSp111.Scaffold630  5866235 37 + 20921866 I
e caeRem4.Crem_Contig0   873378 76 -  4500979 I

a score=-417.000000
s ce10.chrX             3802078 3 + 17718866 --CTC
s cb4.chrX              8928301 3 + 21540570 --CTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   873454 3 -  4500979 --CTC
i caeRem4.Crem_Contig0  I 76 C 0
s caePb3.Scfld02_0      2147780 4 +  4147112 TATT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   27863 4159 -   343467 I
e caeSp111.Scaffold630  5866235 37 + 20921866 I

a score=352519.000000
s ce10.chrX             3802081 524 + 17718866  
s cb4.chrX              8928304 449 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   873457 477 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5866272 472 + 20921866  
i caeSp111.Scaffold630  I 37 C 0
s caePb3.Scfld02_0      2147784 490 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  314975 507 +   343467  
i caeJap4.Scaffold18142 I 2615 n 4159

a score=-23122.000000
s ce10.chrX             3802605 105 + 17718866 TTCGGTGAGCTGGAA----AT---------------------------------------------------------TGAATTTTAAATG------------------TATGGGATTTCGAAGGAA-----------------------------TTCGTAAAAAAATGAC--------------------------C------------------------AACCTGCTT----------------AGCTCTGCTAAAG--AATCCT-----------------------------------------CCAGCATCACTG
s cb4.chrX              8928753 155 + 21540570 TTCGGTGAgctgaaa---caa---gaaaaatgaat-------------------ttctgagaGCTATAGGAGTCCATATAAGCCCTAACTG------------------------------AAGAAA-----------------TTGAacttagaattccaaaaaagaaaac-----------ccgCCAA--------TTACA-------------ACG----AACCTGCTT----------------AGCTCTGCTGAAG--AATCCT-----------------------------------------CCAGCATCACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   873934 137 -  4500979 ttCGGTGAGCTGAAA----AG---CAAAGAT--------------------------TTAGAATTATAGCAGCC----TCAGCGATGACTA------------------------------TTCGAA-----------------ATACAGTTGCACTATGCATGAAGGATTT-----------CAGTCTA--------CT-----------------------CACCTGTTT----------------GGCTCTGCTGAAG--AATCCA-----------------------------------------CCGGCATCGCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5866744 177 + 20921866 TTCAGtgagctgaaa----aatttaaa---------------------------ttttgacAGT------------TTCAAGTTTGGCATAGCTGGAAGGTTCTATCAAGGTGAAGTCTTTGAGGAA-----------------GTATAGTTTTGGTTtgagtttcttcttc--------------tatg--------cTACCTTCAACAACTTTTACA----TACCTGTTT----------------GGCTCTACTGAAG--AATCCT-----------------------------------------CCGGCATCGCTg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2148274 318 +  4147112 TTCGGTGAGCTGAAATCACAGTTTGAAAGGTGAATATAGAGAAGCGCATCTTTTTGTTGACAGCCAGA-TGGCCCATTCAAACACTGCAGA---GGACCGGTATAATATGATGAGatgtcaggaaaaaaaatcccaggAACCAGATGTATGTTTAACTTGTAAAACTAACTCACGAAGCTCACTAGTATGTTTGAAATCTACACTAAGTCATGCTTACAGCGCTACCAACTCCGTAATTTGTAACCCAGAATCTACTGAGGTTAATACCAAACTGTAATGTCAACAGCAACAATTTATAGGAACTGTATATTAGCATCCCTG
i caePb3.Scfld02_0      C 0 I 117
e caeJap4.Scaffold18142  315482 4159 +   343467 I

a score=42060.000000
s ce10.chrX             3802710 139 + 17718866 GCTATCTTTTTGAAGTTAAAATCCAT-ACTGAGTTTT-----CAACAATCTGA-------------AGTTTA-TCAA----AATTATTCA----------CAAAAGTGCGAGA-AAAAACAAA-----AGAATGGAAGC--TGTTCG--AACGGATCTGTGAGGGGT----------GCCCCGACTAC-------------GACGG
s cb4.chrX              8928908 177 + 21540570 GCAAtctttttgaagttgaaatCCATGGCTGAGACGTCGTCACACTAATCTGAAAGGAAGTTTTaaaactgaggaaa----aaatctcgggtcgagggaaaaaaaggatgagacaaaaacaga-----aaaatatggGT--TGCTGG--cacaca-cacgtagggg---------------catccacacacacacataaaGGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   874071 153 -  4500979 GCAAtctttttaaagttgaaatccAT-GTTGAGTCGT-----CACTAATCTGAAAGCAAGTCGTaaaactga-aagg----aaatcttag----------aaaaaagatgagacaaacagaaaaatagaaaatatggGT--TGTTGG--CACACATCAGGCAAGGGG-----------TGACGACTAC-----------------G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5866921 169 + 20921866 gcaatttttttgaagttgaaatCCAT-GTTGAGTCGT-----CACTAATCTGAAAAGATGTCACataaaaga-agggaaaaaaatCTCGA----------CGAAAAGATGAGGCAAACATAAA---CAGAAATATGGGTTGTGTTGGCACACACATCAGCAACGGgtgacgacgacgacgacgactac-----------------g
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2148709 153 +  4147112 GCgatctttttgaagttgaaatcCAT-GTTGAGTCGT-----CACTAATCTGAAAAGATGTAGTAAAACTGA-AGGG----AAATCTC-A----------GAAAAGGATgagacaaacaaaaa-atagaaaatatggGT--TGTTGG--CACACATCAGAAGAGGGT---------GACGACGACTAC-----------------G
i caePb3.Scfld02_0      I 117 C 0
e caeJap4.Scaffold18142  315482 4159 +   343467 I

a score=126403.000000
s ce10.chrX             3802849 276 + 17718866 ACGAAATTACTGG---AAAACG--GGGCTGC---------------------------TGGTAAAGAAGATGGCGGT----GAGGAGGGGAGGGCC---CTA----------GCG----GAAAATCGATGCGAGACTGCGCGAGTCG---TGAA--GGGAAA----GGAAACGAAAAATGACGGAACAAGTGGGAAA----GGAGA-GAATTTTTG--AAAAAGAAGCGAAAATGGGGGGAAAGATGCGTG--CAAC-AAAA--CGCAAGAGGTCGTTCAT-CTTTCTCAACATCCGT----CCTCCAA-----TTTTTTTGGATTTCGTTTTTTTTTTCTGGTAAAATGATGGCATGTT
s cb4.chrX              8929085 319 + 21540570 ACGACATTACTGGaaaaaaaCG--GGgtgaataagaagaagaagaagaagaagacgatgggCAATGTCGGTGTTGGTGGGAGGGGAGGAAAGGGCCCGACTATGAGGCAGGCACA----AAAAATCGATGCGCGACTGCGCGTGCCGTTTTAAA--GAGAAAAACGGGAAACGAAAAGTGACGGAACAAGTGG----TGAAGaagacgaatttttgaaaaaaaaaaacgaaaaa--------agatgCGTGTACAACAAAAAACCGCAAGAGGTCGTTCAT-CTTTCTCAACATTCGTg---catccat-----ttttttctccttttgaGCAC-CAATT-----------CAAGATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   874224 267 -  4500979 ACGACATTACTGG--AAAAACG--GGGTGAA-------------------------------------GACGGCGGTGGGAGGAGAGAGAGGGGCC--ACTA----------GCG----GAAAATCGATGCGAGACTGCGCGTGTCG---TAAA--GGGAAA----GGAAACGAAAAGTGACGGAACAAGTGGAAAATAGAggaga-gaatttttg--aaaaaggagcgAAAAA--------AGATGCGTG--CAACAAAAA--TGCAAGAGGTCGTTCAT-CTTTCTCAGCATTCGCC---TATCCAT-----TTTTTGCCGAATTCGAAAAAGCAAGTCGG---AGTGACGGGATGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5867090 280 + 20921866 acgatattactgg---aaaacgaagggacga------------------------------------cgaAGGCGGTGTGGTGGGGTAGGAGGGGCCCACTAT---------GCG----GAAAATCGATGCGAGACTGCGCGTGTCG---TGTAGGGGGAAA----GGAAACGAAAAGTGACGGAACAAGTGGAAAACGGGaaaga-gaatttttg--aaaaaggagc-AAAAATGGAG---AGATGCGTG--CAAC-AAAA--CGCAAGAGGTCGTTCAT-CTTTCTCAGCATTCGCT---TCTCCGTG--TTTTCCTCCCGAATTCGGATATTCTCGTCAG---AGTGACAGGACGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2148862 274 +  4147112 ACGACATTACTAG---AAAACG--GGGACGA-----------------------------------CCGAGTGCGGT---GGGGGGTAGGCGGGCCCCACTA----------GCG----GAAAATCGATGCGGGCCTGCGCGTGCTG---Tgaa--gggaaa----ggaaacgaaaagtgacggaacaagtggaaaacggggagga-aaatttttg--aaaaaggagcaaaaaaaaaag---agatgcgTG--CAACAAAAA--TGCAAGAGGTCGTTCAT-CTTTCTCAACATTCGTT---TCGccgt---tttttcttccgaattcGGACATGTCGATTGG---GGTGACGGGATGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   32022 241 -   343467 ACGAAATTCCTGA---AAAAAG--GGAATGG------------------------------------------------AAAGGGAGTCGAGGGTCCt-cta----------gcgaaaaaaaaatcgatgcgAAGCTGCGCATGGAG---------Agaaaa----ggaaacgaaaagtgacggaaaa-------------ggggt-gaa-ttttg--aaaataaaacaaga----------aaatgcaTG--CAACAAACA--C-CAAGAGGTCGTTCGTATTTTTTCGGCATTCATCTTATTCTCGTAgctgtttcttttcttttc-------tatgTCAG---AATGATGAAATGTT
i caeJap4.Scaffold18142 I 4159 I 10785

a score=15984.000000
s ce10.chrX             3803125 379 + 17718866 ACACTTTT---GAAGAGAAGTTTGT--TACGAGCAATCATATTTTTA-AAAAAAGT-GCACATATTTTTT--ATT--ATTGAGTTTGAGT-GCTTTGAATAGGAGCTTGAT------AAAGTAT----CACATTGATTTTTGG--------------AGTCATGCAGTGGATGTAAACATTTTAACT--------------GTTAT--T----TTTAA-----------GCAACCCAAT-----------AGTATTTTTC-------------------TGAAAAACTT------ACAAAAAAAGCTTAAAATATATTTTCtaataataataataataagaagaagaataatGAATGA-AAATATAA--CGACTCTTATGGGAAATCGTATTTTCTAAACACAATAAACAATAACAATGAGCTCGTGGTGAGTAATTGAATAAA--GTGAAG-ACAAAAGAAGCGCACGCA----CGAGAAACGCGTCAGCA
s cb4.chrX              8929404 353 + 21540570 ACATTTTGTGAGAAACGGGG-TTGTTATACATGCAATCAAATCTGTG-AGAAGTGC-------AGTTTTT--ATTcgatttc-----aag-tttctgaataGCATATTAATGAGGAAAAACATTCCGACAAGCACTTTTTTGG-------------------TGC-----TTGGCAATAACTAAAAT--------------TTCGTGCA----TTATA------------CTGTTTATT-----------------------------CAGTAT-----GACAAAACTTtagtgaaaataaaaaactcacaatataTCAAAGAATAATCTTCataatag-------aaattttcaaca-gaCAATAGTCTCG--GTAGTGAGCAATcga----------------caacaacaacaa-------acGGTGAGTAATTGAATAGAAGGAGAGGCGCACGTAGTGTGCAAACG-AATCGCAAAACGCGCCTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   874491 400 -  4500979 ATACTTTT---GAAAAGGGG-TTGT--TACATGCAATCATTCTCGAGAAAAAGTGC-GTTTCAAGTcctcaaatttgattttttctgaca-ATCTTGAATAGCATCTTGAT------AGAGATTTGTGCATTTTCTTTTCGAG--------------CGTCATGC-----ATACGAATACCAAATAT--------------TTCTT--A----TTACAAATACACATTCGTTGGTCGTTGCATTTGGGTGGGAAGGTTTC--------CGACAg-----agaaaaagtattttcaaaTGGTAAAACTCACTAAATGTCATAAAATCGTCCCAATAATAA-------TACAATTCATCA-GAAAAGAG--TCG--ATTGTGAAGAAAGGAAGT-----------ATAAACAATAACAATTGCTGGGCGTTTAGTAATTTAATAAGAGAAGACG-GCAAGAAGTGCGCACGCA-AA-CAAGAAATGCGCAAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5867370 395 + 20921866 ATACTTTT---GAAGAGGAGTTTGT--TACATGCAATCATCATCCAA-AAAAGTGC-GTTTGAAATGTACAAATCTGATtgaatttcatcttttttgaatagcaTCTTGAT------AATGTTC----CATGCACTTTTTAACATAATCCTCTGATTTGATACAT-----GAATCAACATC--ATAT--------------GATTT-------TTAAA-----------gcaatttggt-ttttttggtacgcgtgtttcaaa--aaacgccgtaccaaaaagaaaccg----aaaaagagaaaactcactaaatatcataaaaTACACTGCAGAATAA-------TATCATTCATTAGGAAAATGG--GGA--GTTGGGA------GGAAG-----------ATGAATAACAACAGTTGGCGTGCAATGGGTAATTGAATAAACGAGGAA--ACAAA--AGACGCACACG-CA-CAAGAAATGGGTCAATA
i caeSp111.Scaffold630  C 0 I 947
s caePb3.Scfld02_0      2149136 404 +  4147112 ATACTTTT---GAAGAGGGGTTTGT--TACATGCAATCATAGtccaa-aaaatagcagtttgAAACGCCCAAATCTGATTGACTatgatc-attttgaatagCATCTTGAT------AGAGTTC----GATGTACTTGTTCAC-TAGTACGATGAATTGACATGC-----ACGACAACATC--ACATGATGAGCGACAGTGCATTT--CTTCATTGCG-----------gccaatcatt-ttc---------catctttcaTGTCATACGTTGT-----AAACAAACTT------GGAGCAAAAACTTACTAAATATCATAACAGACACTGCATAATAA-------TATCATTCATTA-GAAAATAG--CGA--GTTGTGAG---ATGGGAG-----------ATAAACAATAACAGTTGGCGAGCGATGGGTAATTGAATGAAAGATGAA--ACAAAAGAGACGCACACATCA-CAGAAAAGGGGTCAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   32263 10785 -   343467 I

a score=25.000000
s ce10.chrX             3803504 2 + 17718866 GC
s cb4.chrX              8929757 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   874891 2 -  4500979 AC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2149540 2 +  4147112 GC
i caePb3.Scfld02_0      C 0 I 1610
e caeJap4.Scaffold18142   32263 10785 -   343467 I
e caeSp111.Scaffold630  5867765 947 + 20921866 I

a score=300.000000
s ce10.chrX             3803506 1 + 17718866 C
s cb4.chrX              8929759 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   874893 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 I 1267
e caePb3.Scfld02_0      2149542 1610 +  4147112 I
e caeJap4.Scaffold18142   32263 10785 -   343467 I
e caeSp111.Scaffold630  5867765 947 + 20921866 I

a score=211.000000
s ce10.chrX             3803507 13 + 17718866 ACTGCATTGACAC
s cb4.chrX              8929760 11 + 21540570 A--ACGTTGACGC
i cb4.chrX              C 0 I 2127
e caePb3.Scfld02_0      2149542 1610 +  4147112 I
e caeJap4.Scaffold18142   32263 10785 -   343467 I
e caeSp111.Scaffold630  5867765 947 + 20921866 I
e caeRem4.Crem_Contig0   874894 1267 -  4500979 I

a score=0.000000
s ce10.chrX             3803520 1382 + 17718866  
e caePb3.Scfld02_0      2149542 1610 +  4147112 I
e caeJap4.Scaffold18142   32263 10785 -   343467 I
e cb4.chrX              8929771 2127 + 21540570 I
e caeSp111.Scaffold630  5867765  947 + 20921866 I
e caeRem4.Crem_Contig0   874894 1267 -  4500979 I

a score=363.000000
s ce10.chrX             3804902 31 + 17718866 TCCATTTCCGT-----CCCAAATTGGTAAACA------CGAT
s caePb3.Scfld02_0      2151152 42 +  4147112 TCCATTTCCGTGTTTACTTATCCTTGTAAACATATTTGCTAA
i caePb3.Scfld02_0      I 1610 C 0
e caeJap4.Scaffold18142   32263 10785 -   343467 I
e cb4.chrX              8929771 2127 + 21540570 I
e caeSp111.Scaffold630  5867765 947 + 20921866 I
e caeRem4.Crem_Contig0   874894 1267 -  4500979 I

a score=1211.000000
s ce10.chrX             3804933 5 + 17718866 TTTTT
s caeSp111.Scaffold630  5868712 5 + 20921866 TTATA
i caeSp111.Scaffold630  I 947 C 0
s caePb3.Scfld02_0      2151194 5 +  4147112 TTATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   43048 5 -   343467 TTGTA
i caeJap4.Scaffold18142 I 10785 C 0
e cb4.chrX              8929771 2127 + 21540570 I
e caeRem4.Crem_Contig0   874894 1267 -  4500979 I

a score=-1151.000000
s ce10.chrX             3804938 9 + 17718866 ACAAGCGCC----
s caeRem4.Crem_Contig0   876161 9 -  4500979 ACGAACACG----
i caeRem4.Crem_Contig0  I 1267 C 0
s caeSp111.Scaffold630  5868717 5 + 20921866 ----ACACA----
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2151199 5 +  4147112 ----ACACG----
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   43053 9 -   343467 ----ACAACTTTC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8929771 2127 + 21540570 I

a score=323434.000000
s ce10.chrX             3804947 656 + 17718866  
s cb4.chrX              8931898 680 + 21540570  
i cb4.chrX              I 2127 I 105
s caeRem4.Crem_Contig0   876170 689 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5868726 645 + 20921866  
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2151210 696 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142   43062 688 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-9518.000000
s ce10.chrX             3805603 69 + 17718866 CTTGGAATCTGGACGAACAAATATCTCGCTTT---TTATATAATCCCGCGTATTT-TCGTATGTTTTTTGTTG---
s caeRem4.Crem_Contig0   876859 55 -  4500979 CTCGGGACA------AAAGGATAATT---TTC---TTACTTCATCTTTT-TACTCATTATTCATT-----CTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5869371 62 + 20921866 CATTAAATTTGGGACAAGGGATATTCT-CTTC---ataattcattcatt-tataT-TCATAAATC-----TTG---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2151906 57 +  4147112 CTGAGAACT------AACAGATACTTT-CTTCTCTCTAA--CATTTATC-TATTT-CCATTCATT-----CTG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   43750 55 -   343467 -----AATGAGATGAGATGAATAGATTAATTT---CCGTTTCatg-----tattt-ttgtt--tt-----ctgttg
i caeJap4.Scaffold18142 C 0 I 55
e cb4.chrX              8932578 105 + 21540570 I

a score=6735.000000
s ce10.chrX             3805672 14 + 17718866 ATACCTGTGTGTGT
s caeRem4.Crem_Contig0   876914 14 -  4500979 ATACCTATGTGTAT
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold630  5869433 14 + 20921866 ATACTTATGTGTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2151963 14 +  4147112 ATACCTATGTGTAT
i caePb3.Scfld02_0      C 0 I 71
e caeJap4.Scaffold18142   43805 55 -   343467 I
e cb4.chrX              8932578 105 + 21540570 I

a score=155.000000
s ce10.chrX             3805686 55 + 17718866 ATCCAGTGTATTAATATGAGTTTTGTGGAATAAATAATCAACTGTTATTATAATT
s caeSp111.Scaffold630  5869447 46 + 20921866 ctatgttgttt---------tttttcaaaattgattttaaagtGTTTTAATAACT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2151977 71 +  4147112 I
e caeJap4.Scaffold18142   43805 55 -   343467 I
e cb4.chrX              8932578 105 + 21540570 I
e caeRem4.Crem_Contig0   876928 62 -  4500979 I

a score=0.000000
s ce10.chrX             3805741 877 + 17718866  
e caePb3.Scfld02_0      2151977  71 +  4147112 I
e caeJap4.Scaffold18142   43805  55 -   343467 I
e cb4.chrX              8932578 105 + 21540570 I
e caeSp111.Scaffold630  5869493   0 + 20921866 C
e caeRem4.Crem_Contig0   876928  62 -  4500979 I

a score=438.000000
s ce10.chrX             3806618 12 + 17718866 AATAATTTTTCG
s caeSp111.Scaffold630  5869493 12 + 20921866 AAGAATTCATTG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2151977 71 +  4147112 I
e caeJap4.Scaffold18142   43805 55 -   343467 I
e cb4.chrX              8932578 105 + 21540570 I
e caeRem4.Crem_Contig0   876928 62 -  4500979 I

a score=-1441.000000
s ce10.chrX             3806630 5 + 17718866 AAAGT-
s caeSp111.Scaffold630  5869505 1 + 20921866 A-----
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   43860 5 -   343467 -aaaac
i caeJap4.Scaffold18142 I 55 C 0
e caePb3.Scfld02_0      2151977 71 +  4147112 I
e cb4.chrX              8932578 105 + 21540570 I
e caeRem4.Crem_Contig0   876928 62 -  4500979 I

a score=-1583.000000
s ce10.chrX             3806635 4 + 17718866 AACC-
s cb4.chrX              8932683 4 + 21540570 AAAT-
i cb4.chrX              I 105 C 0
s caeSp111.Scaffold630  5869506 1 + 20921866 ---T-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   43865 4 -   343467 -aata
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2151977 71 +  4147112 I
e caeRem4.Crem_Contig0   876928 62 -  4500979 I

a score=52.000000
s ce10.chrX             3806639  9 + 17718866 -----TGAATTTCT
s cb4.chrX              8932687  9 + 21540570 -----TGTATGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   876990  9 -  4500979 -----TGTATTGTG
i caeRem4.Crem_Contig0  I 62 C 0
s caeSp111.Scaffold630  5869507  9 + 20921866 -----TGTATTGTG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   43869 10 -   343467 tgatATTTAT----
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2151977 71 +  4147112 I

a score=125365.000000
s ce10.chrX             3806648 239 + 17718866 TTGTTATT-CCACGTTATGTT-----------GTC-----AGATAAATCAATGG---CGGAGA----GAAAA--------CGTT--TCTGTTGTTCGATGT--------------TTTCCCTCATTTCTTTCTCTCAAGAGTGAA------G---ACGGCACGGTGTAAACT-AGAAGCCTGATG-CTCAATGCATTCGTGT--GGGCGCCCTTATGATCTCATGCGA---AGGCTGTTATAGACCC-AGAAGCGCTTGTTTTGTTCGAAC-TTTTTTTTGTTAATAAAATCAACTGTTTCAAAG
s cb4.chrX              8932696 241 + 21540570 TTGTTATA-TCACTTTATGTC-----------ATCATTCGGGATAAATCAATGGACACAGAAAAAGCGAAAACGTTTGG-TGTTTCTCtgtttttcgatgttttcgcTCATTTTCTTTCCCTCCTTTCTCTC-CTCAGGAATGAAGACGGCG---ACGGCACGGTGTAAACTAAGGAGCCTGATG-CTCAACGTGCTTGTGTGGGGGCGCCCTTATGATCTCATGCGAAAGAAGAGCGT--CGACCCGGG----------TTagattttac----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   876999 219 -  4500979 TTGT--TA-TTACGCTATGTC-----------ATC-----GGATAAATCAATGG---CGGAG-----GAAAACGTTTgg-tgtt--tctgtttttcgatgt--------------tttccctcatttctctctctcaagaGTGAA------G---ACGGCACGGTGTAAACT-AGGAGCCTGATG-CTCAATGCATTCGTGT--GGGCGCCCTTATGATCTCATGCGA---GAGCGTCT--CGACCC-GG----------TTAGCTTCTAC-TTTTT------------Atctattgttttctga
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold630  5869516 220 + 20921866 TTGT--TC-ATCCACTATGTC-----------ATC-----GGATAAATCaatgg---agaaa-----gaaaacgtttGGTTGTT--TCTGTTGTTCGATGT--------------TTTCCCTCATTTCT----CTCAAGAGTGAA------G---ACGGCACGGTGTAAACT-AAGAGCCTGATGCCTCAATGCATTCGTGT--GGGCGCCCTTATGATCTCATGCGA---AGAAGCGTCGCGACCC-AG----------TTAGCTTCTACTTTTTT------------ATCTATTGTTTCTGAG
i caeSp111.Scaffold630  C 0 I 55
s caePb3.Scfld02_0      2152048 217 +  4147112 TTGT--TC-ATTCACTGTGTC-----------ATC-----GGATAAATCAATGG---CAAAG-----GAAAACGTTTgg-tgtt--tctgtttttcgatgt--------------tttccctcatttct----ctCAAGAGTGAA------GACAACGGCACGGTGTAAACT-AAGAGCCTGATGCCTCAATGCATTTGTGT--GGGCGCCCTTATGATCTCATGCGA---AGCTTCTT--CGACCC-AG----------TTAGCTTTTAC-TTTTT------------ATCTAttgtttcag--
i caePb3.Scfld02_0      I 71 C 0
s caeJap4.Scaffold18142   43879 199 -   343467 TCAT--TAGATACATTATATTGTTTGTATTAGATC-----TGATAAATCATTTG---CGGAG-----ATAAAGCCTTGA-TGGT--CCTGTTTTTCGGTGT--------------TTTCTTCTATTTCT----CTCGTGAGTGAA------G---AC-ACACAGTGTAAACT-AAGAGCCTGATG-CTCA-----TTCGTGT--GGGCGCCCTTATGATCTCATGCGA---AAGCTTGT--CGACCTCAG----------TTCTCGTCT------------------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-1630.000000
s ce10.chrX             3806887 13 + 17718866 GAACAATTGTTAT
s caeRem4.Crem_Contig0   877250 13 -  4500979 GTACAATTTTCAC
i caeRem4.Crem_Contig0  I 32 I 17
s caePb3.Scfld02_0      2152265  1 +  4147112 ---------t---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   44078  5 -   343467 --------GTTAC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8932937  0 + 21540570 C
e caeSp111.Scaffold630  5869736 55 + 20921866 I

a score=1009.000000
s ce10.chrX             3806900 13 + 17718866 TTTTTTTTGGAGT
s cb4.chrX              8932937  9 + 21540570 ttttttttg----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2152266 13 +  4147112 attttcttgaact
i caePb3.Scfld02_0      C 0 I 70
s caeJap4.Scaffold18142   44083 13 -   343467 TTACTATTGTAGT
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5869736 55 + 20921866 I
e caeRem4.Crem_Contig0   877263 17 -  4500979 I

a score=-492.000000
s ce10.chrX             3806913 5 + 17718866 -GTTTA
s cb4.chrX              8932946 4 + 21540570 --tttg
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142   44096 5 -   343467 Cgttt-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2152279 70 +  4147112 I
e caeSp111.Scaffold630  5869736 55 + 20921866 I
e caeRem4.Crem_Contig0   877263 17 -  4500979 I

a score=-2818.000000
s ce10.chrX             3806918 21 + 17718866 GAATGATTTTTTTTCGA------ATAA
s cb4.chrX              8932950  2 + 21540570 -------------------------aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   877280  7 -  4500979 gtatg--------------------aa
i caeRem4.Crem_Contig0  I 17 C 0
s caeJap4.Scaffold18142   44101 27 -   343467 aaactatttttctaCAACAGTGCACAA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2152279 70 +  4147112 I
e caeSp111.Scaffold630  5869736 55 + 20921866 I

a score=-10959.000000
s ce10.chrX             3806939 50 + 17718866 -------TTTTTT-AAATCTTTCTTATTAGTAACACATTTTACTTTGTGTGCATTTTC
s cb4.chrX              8932952 43 + 21540570 -------tctATT---GTTTTTGGGGTTAAGAACACATAGAACTTCGTA-----TTTC
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   877287 29 -  4500979 -------tatttt-------------tcagaaaaaaagaaaattctgaa---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5869791 21 + 20921866 -------TTTGTT-------------------------AGAGCTTTCCA-----GTTC
i caeSp111.Scaffold630  I 55 I 20
s caeJap4.Scaffold18142   44128 55 -   343467 GCTCAACTATATTTATATTTTAACTACGAGgcatccgtttttttttctt--cagttt-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2152279 70 +  4147112 I

a score=134837.000000
s ce10.chrX             3806989 756 + 17718866  
s cb4.chrX              8932998 766 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   877316 655 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5869832 648 + 20921866  
i caeSp111.Scaffold630  I 20 I 4
s caePb3.Scfld02_0      2152349 719 +  4147112  
i caePb3.Scfld02_0      I 70 I 10
s caeJap4.Scaffold18142   44183 610 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=1146.000000
s ce10.chrX             3807745 2 + 17718866 GA
s cb4.chrX              8933764 2 + 21540570 GA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2153078 2 +  4147112 GA
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18142   44793 2 -   343467 ga
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5870480 4 + 20921866 I
e caeRem4.Crem_Contig0   877971 2 -  4500979 I

a score=242484.000000
s ce10.chrX             3807747 415 + 17718866 TCCTTCTCCAAAGAAAGTTCCTGCAAAACCTAGAGATGCATCCCC-AAAGAAAATTATGGCGGCTAAAAAAGAACCGGAGACGCT---------------ACCAGCAGTTCCACCGACTCCAGTAAAGAACCCAGTGAAAAAGTTTAAAGCACCTTGGGAAGACGACGAAGTTGATGTGGAGGATGTCAAAGATGCTCCAACAGTTCCTGCTAAGAAGACTCCTGTTCTCAAAAAAAAAGAACCAGCCGCTGCTGCAAAACCAAGAGATCCATCACCAAAAAAAGCAGCACCAAGCAAAGAACAC---GACCCAATAGTTCCACCAACTCCAATTAAAAATCCAGCAAAAAAATGGAAACCACCATGGGAAGATGATGAAGTTCCGACTGAAGAAATTAAAGAACCCGAGCCAGCTACTCGAAAAGTCCCTGCA
s cb4.chrX              8933766 370 + 21540570 ------------------------------------TCCTTCACC-CAAAAAGGCAGT---TGCcaagaaagatccaga---------------------acccGTAGTACCTCCTACTCCAATCAAAAATCCCGCCAAAAAATGGAAGCCACCATGGgaagaagatgaaacgcccactgaagaagtgaaagaaaccccgaaagctccagaaaagaagaCACCAGTTCTAAAGAAAAAGGATTCAGCAACAACAGTCAAACCCAGAGATCCTTCTCCCAAGAAAGCTGTTGCTAAGAAAGAACAA---GAACCAGTTGTCCCACCAACGCAAATTAAGAATCCAGCCAAAAAGTGGAAGCCACCATGGGAAGAAGATGAAACGCCGACAGAAGAAGTGAAAGAAGCCGAGCCACCAGCACGTAAGGTTCCAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   877973 424 -  4500979 TCtatctccaaaaaaaattgctgcAAAGCCAAGAGATCCTTCTCC-aaaaaaaGCAGTTGCTGCTAAGAAAGAACCAGAAAAGCT---ACCTGATTCTACAACTGTTGTCCCCCCTACTCCAGTCAAGAATccagtcaaaaaatggaaacccCCATGGGAAGAGGATGAAGCAGATgttgaagaagtgaaagaagCACCAGTagttcctgaaaaaaagactccagttttgaaaaaaaaagagc---caaCTACCGTAAAACCCAGAGATCCATCGCCGAAGAAAGCTGCTGCCAAGAAAGAACCG---GAGCCAGTAGTTCCACCAACTCCTATCAAAAATCCAGCAAAGAAATGGAAGCCTCCATGGGAAGAAGACGAAACACCTACTGAGGAAGTGAAAGAACCAGAGCCAACCGCACGGAAAGTTCCAGCA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5870484 394 + 20921866 -------------------------AAACCAAGAGATCCATCTCCTAAAAAAGGCTGT---GGCTAAGAAAGAACCAGAAAAGTT---ACCCGAAAC---GAGTGCGGTACCTCCAACACCGATCAAAAATCCAGCTAAAAAGTGGAAACCGCCATGGGAAGATGACGAAGTGGATGTTGAAGAGGTGAAAGAAGCACCAAAGGCtcctgaaaagaaaacaccagttctcaaaaagaaagaac---caACAACAGTTAAGCCAAGAGATCCTTCTCCTAAAAAAGCTGTTGCGAAGAAAGAACCA---GAACCAGTTGTACCTCCGACGCCCATCAAAAATCcatcgaaaaaatggaaaccgCCATgggaagaagacgaaacaCCCACAGAAGAAGTTAAGGAATCTGAGCCAGCTAAACGGAAAGTTCCTGAA
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2153080 388 +  4147112 CCCGTCTCCAAAGAAAGTTGCGACCAAACCAAGAGATCCATCACC-aaaaaaaGCCGT---CGCTAAAAAGGAACCAGAA---------------------------GTTCCACCGACTCCTATAAAAAATCCTGCCAAAAAGTGGAAACCTCCatgggaagaagatgaaacacCGGTTGAAGAAGTCAAGGAAACTCCTGTCGCTCCAGAAAAGAAGACTCcagttctcaaaaagaaagaac------ccGCAGTTAAACCAAGAGACccatctccaaaaaaagcagttgCCAAGAAAGAACCA---GAA------GTCCCACCCACTCCCATCAAAAACCCagccaaaaaatggaagcCGCCatgggaagaagatgaagcacCGGTGGAAGAAGTCAAGGAACCCGAACCTGCAGCACGCAAAGTCCCCGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   44795 379 -   343467 ---------gaaaaaagttcCAGCCAAGCGTAG---TCTTTCACC-GAAAAAACCAGT---CTCaaaaaaaGAACCAGAAAAATCTGAACCCGAAGC---AAGTGCTGTTCCACCAACACCTGTTAAAAACCCAGTGAAAAAGTGGAAGCCACCATGGGAAGAAGACGAAGCTGATACAGAGGAAGTAAAAGATGTTC---AACCACCCGCaaagaaaactcctgtgctgaaaaagaaagaac---------------------------------cgaaaaaagaaccactgaaaactgaacCCACTGCGCCTGCCGTTCCTCCAACTCCTGTCAAGAATCCAGTGAAGAAATGGAAACCACCATGGGAAGAAGACGAAGTTCCAACAGAGGAGATGAGTGAGCCGGAACcattacccaaaaaaactcCTGCA
i caeJap4.Scaffold18142 C 0 I 76

a score=8369.000000
s ce10.chrX             3808162 31 + 17718866 TTAAAGAAAAAGGAGCCATC---AACTT------------------CTGTTA
s cb4.chrX              8934136 49 + 21540570 TTAAAAAAGAAGGAACCAGT---TGCAGAACCTGGAAAGAAGACACCAGCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   878397 31 -  4500979 CTCAAAAAGAAGGAACCAAC---CACTG------------------CAGCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5870878 31 + 20921866 CTCAAGAAGAAAGAACCAAC---GACAG------------------CCGCTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2153468 34 +  4147112 CTTAAAAAGAAAGAGCCAGCCGTGCCAG------------------CGGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   45174 76 -   343467 I

a score=124487.000000
s ce10.chrX             3808193 170 + 17718866 AGCCTG------TCAGCGATCCATCACCAACCAAAAAAGTTCCTGTGAAAAAGGAACCCGAGGTTCCACCAACACCGATTAAGAATCCAACAAAGAAGTGGAAACCTCCATGGGAA---GACGAGACTCCAGTTGAAGAAGTGAAAGAACCACCAGTGCCGGAGAAGAAAGCACCAGTT
s cb4.chrX              8934185 179 + 21540570 CAACTGTCAAGCCGAGAGATCCATCTCCAAAGAAGGCGTTACCAGTGAAAAAGGAGCCAGAAGTTCCACCAACTCCAGTCAAAAACCCAGTTAAGAAGTGGAAACCGCCATGGGAGGAAGATGAAGCTCCCGTTGAAGACGTGAAAGCACCAGCAGCTccagaaaagaaaacaccagtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   878428 173 -  4500979 AACCTA------CAAGAGATCCATCACCAAAGAAGGCAGTGCCAGCAAAGACTGAACCAGAAGTACCACCAACTCCAGTCAAGAATCCAGTTAAAAAGTGGAAACCGCCATGGGAAGAAGATGAAGCTCCGGTTGAAGAAGTGAAGCAGCCTGCAGCTCCTGAGAAGAAGACTCCGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5870909 173 + 20921866 AGCCAG------CTAGAGATCCGTCGCCAAAAAAGGCCACACCAGCTAAAGCAGAACCAGAAGTTCCCCCGACTCCAATAAAGAATCCAGCAAAGAAATGGAAGCCACCatgggaagaagatgaggCTCCTGTAGAAGAAGTAAAGGAACCACCAGCACCGGAGAAGAAAACTCctgtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2153502 170 +  4147112 AACCA---------AGAGACCCTTCACCAAAGAAAGCAGCACCTGTGAAATTAGAACCAGAAGTACCCCCTACTCCTGTCAAAAATccagtcaaaaaatggaagccTCCGTGGGAAGACGATGAAACACCAGTTGAAGAAGTCAAAGAGCCAGTTGTTCCGGAAAAGAAAACaccaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45250 173 -   343467 AGCCCG------CCACAGATCCGTCAGCTAAAAAATCGCCACTTGAGACAACAGCTCCACAAGTTCCACCGACTCCAGTGAAAAATCctgtcaaaaaatggaagcCACCATGGGAGGAAGATGAAGTTCCAACAGAAGATGTAAAAATTCCAGCAGCGCCCGAGaaaaaaaCACCAGTT
i caeJap4.Scaffold18142 I 76 T 249

a score=7445.000000
s ce10.chrX             3808363 25 + 17718866 TTAAAAAAGAAGGATCCGGCAC---CGG
s cb4.chrX              8934364 28 + 21540570 ttgaaaaagaaagagccagtgaaagaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   878601 28 -  4500979 CTCAAAAGGAAAGAACCCATTCCAGCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5871082 28 + 20921866 ttgaagaagaaggaaccAACCACTGCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2153672 19 +  4147112 ctcaaaaagaaagacc---------CAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45174 25 -   343467 CTCAAAAAGAAAGATCCAGCTCAAA---
i caeJap4.Scaffold18142 T 249 I 249

a score=85441.000000
s ce10.chrX             3808388 213 + 17718866 CTGCAAAAG------CAAGAGATCCATCACCATCAAAAGCTGCACC---------------------------------------------------------------------------------------------------------AAAAAAA------GTTGAACCAAGTTCACCTGTGGTTCCGCCTACGCCAGTGAAAAACCCTGTGAAGAAGTACAAACCACCATGGGAAGTGGACGATGAACCAGCTGAAGAAGTCAAAAAACCTTCAGCACCG---------GAGAAGAAAACCCCTGTTTTGAAAAGAAAGGAGCCCG---AACCTAGTT
s cb4.chrX              8934392 258 + 21540570 ccgagaaga------aaaccaCAGCTCCGGCTGCCAAACCAGCACCTGTTGCCAAACCAAGA---------------------------------------------------------------GGCCCATCTCCCCAGAAAGCCGCACCAGTCAAA------GTTGAACCGAATACTCCAGAAGTTCCTCCGACTCCGGTAAAAAATCcagtgaaaaaatggaagcCTCCATGGGAAACTGATGAGGATCCAGCAGAAGAAGT---------TGCTGCACCACCACCTCCCGAGAAGAAAACACCAGTACTGGCAAAGAAGACACCAACTCCGGCCGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   878629 282 -  4500979 GTGCTAAAC------CAGCAGACGCACCGCCTAAAAAATCAGTCACTGTCAAAGAGCCAGAACCAGCAAAAGTGCCTGCGAAAAAGC-----------------------------GT-------GATCCATCTCCCAAAAAAGCTGCTCCAGTGAAA------GCTGAGCCAAAGACACCAGAAGTACCTCCGACACCGATCAAGAATCCAGCAAAGAAATGGAAACCACCATgggaagaagatgaaacaCCTACTGAAGATGTGAAGAAGCCTGCTGAACCA---------GAGAAGAAAACTCCTGtattaaaaagaaaagaaccgG---AAGCTGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5871110 288 + 20921866 CTGCTAAAC------CAAGGGATGCATCACCGAAAAAAGCTGTTCC------------------------------TACAAAGGAACCAGCCAAGGACGCAGCGAAGGAGCCAGCTAAGAAGAGAGATCCATCTCCGAAAAAAGCGCTTCCAACCAAA------TTGGAAGTGAAGACTCCGGAAGTTCCACCTACTCCAGTGAAGAATCCagtgaagaaatggaaaccTCCATGGGAAGCAGATGAGGATCCAGCCGAAGAAGTGAAGCAACCTGCAGTccca---------gaaaagaaaacaccTGTTTTAAAGCGGAAAGAACCTG---AGGCAAGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2153691 237 +  4147112 CTGCAAAAC------CGCGTGATCCATCGCCTAAAAAGGCTGTTAC------------------------------AGTAAAAGAAC------------CAGAAAAGGAACCACCCAA---------------------------------ATCAAAA------GCTGAACCGAAAACTCCTGAAGTACCACCAACTCCAGTCAAGAATccagtcaaaaaatggaaaccaCCATGGGAAGACGATGAAGATCCAGTTGAAGAAGTAAAGCAACCACCTGTTCCA---------GAAAAGAAGACACcggttttgaagagaaaagaaccTG---AA------A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45448 224 -   343467 CCGCAAAACCTGATTCAAGAGATCCATCACCaaaaaaaGTTGTGCC---------------------------------------------------------------------------------------------------------AGCTAAAAAATTGGCGGAGCCTGAGAAGCCAGCTGCTCCATCAACTCCAGTTAAAAATCcggtgaaaaaatggaagccTCCATGGGAGGACGATGAAGTTCCAACAGAAGATGTAAAGGCTCCTACTGTTCCT---------GAAAAGAAAACACCAGTTCTAAAAAGAAAAGAGCCGA---CTACAGCT-
i caeJap4.Scaffold18142 I 249 T 473

a score=108237.000000
s ce10.chrX             3808601 270 + 17718866 CAACAACTCCTTCAAGCGATCCGTCACCTAAAAAAGCAGCTCCTGCA---------------------------------GTAAAACCGAGAGACTCCTCTCCCAAAAAGGCTACACCTCTTCAAGCGGATCCCAAAGCACAAGAAGTGCCACCAACCCCAGTGAAGAATCCTGTGAAGAAATATAAACCACCATGGGAAGTAGATGATGAAGATCCTGTTGAAGAAGTGAAACAACCAGAAGCTCCGGCAAAGAAAACTCCAGTTCTCAAGAGAAAAGAACCTG---------CCGCAAAAGA------------------------------------------------------TACTGCAA
s cb4.chrX              8934650 243 + 21540570 CAAAACCT---------------------------------------AAAGAGGCTCCGAAA------------------GCCAAAGCTCGAGATCCCTCTCCaaaaaaaGCAGCACCAGTTAAAGTCGAACCTAAGGCTCCCGAAGTTCCTCCAACTCCAGTCAAAAATCCAGTGAAGAAATGGAAGCCACCATGGGA---AGCTGACGAAGATCCAGCTGAGGAAGTCGCAGCACCGCCTCCTCCTGAAAAGAAAACTCCAGTGCTGAAGAGGAAAGAGCCGG---AAA------CTAAACC------------------------------------------------------TTCAGCAA
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   878911 284 -  4500979 CCAAACCGTCTGCCAGTGATCCATCTCCGAAAAAAGCTGTTCCTGCAAAAGACGCCGCAAAAGAACCTGTTAAACCAGCTGCAAAACCAAGAGACCCATCTCCGAAGAAAGCCGTTCCAGGGAAATCTGAACCG---------GAAGTGCCCCCAACTCCCGTTAAGAATCCTGTAAAGAAGTGGAAGCCGCCATGGGA---AGATGATGAGACTCCAGTTGAAGAGGTGAAGGAGCCATCTGCACCAGAGAAGAAAACgcctgttttgaaaaag-aagagccaT---------------CATC------------------------------------------------------TGCTGCAA
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5871398 356 + 20921866 CAAAACCT------TCCGACCCTGCACCAAAGAAAGCTGCACCAACAAAAGAACCAGCCAAAGAACCTGCCAAAGCTGCAGTAAAACCAAGAGACCCGTCTCCCAAGAAAGCAGTTTCTGTCAAACCCGATCCAAAACAGGCAGAAGTTCCTCTGACGCCAATAAAGAATCcagc-aaaaaatggaaaccgccatggga---agaagatgaggCTCCAGTTGAAGAAGTAAAGGAACCGCCAGCTCCGGAGAAGAAAACCCCtgtgttgaagaagaaggaaccAACCCCGGCTACCGCTAAACCAAGAGATCCATCGCCGAAGAAAGCTATTCCTGCCAAAGAACCGATAAAAGATGCTGCTGCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2153928 351 +  4147112 CCAAACCA------GCCGACACCGCAACGAAAAAACCGGCACCAGCAAAAGAGCCAACAAAAGAAGCGGCTAAACCTGCAGCAAAGCCGAGAGATCCATCGCCCAAAAAAGCTGTTCCGGTCAAAGCAGAGCCAAAGTTGCCAGAAGTGCCTCCTACACCTGTCAAGAACCCAGTGAAGAAATGGAAGCCACCatggga---agaagatgaaaatccAGTGGAGGAAGTGAAAGAACCTCCGGCTCCAGAGAAGAAGACGCCagtcctgaaaaagaaagagccAA---CAACCGCTGCCAAACCCAGAGATCCATCACCCAAAAAAGCAGTCCCCGTTAAAGATCCGGTAAAAGA---TGCAGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45199 255 -   343467 CAAAACCTGCCGCTCGCGATCTTTCTCCTaaaaaaaCAGCACCAAAGGCAGAGCCCGCCACA------------------------------GATCCGTCAGCTAAAAAATCGCCACTTGAGACAACAGCTCCA---------CAAGTTCCACCGACTCCAGTGAAAAATCctgtcaaaaaatggaagcCACCATGGGA---GGAAGATGAAGTTCCAACAGAAGATGTAAAAATTCCAGCAGCGCCCGAGaaaaaaaCACCAGTTCTGAAGAGGAAAGAACCCA---CTACGGCCGCAA------------------------------------------------------------------
i caeJap4.Scaffold18142 T 473 C 0

a score=50703.000000
s ce10.chrX             3808871 192 + 17718866 AACCGGCGACAT------------------CGAAAACTCCGGA---------AACTCCTGAAAAGAAGGATCCGGTGAAACCACGAGACTCTTCTCCAAAGAAGGTAGCTGCCA---------------AACCGGAC-----TCTG------CTCAAGCTCCTGCCACTCCTGTCAAAAATCCAGTTAAGAAATGGCGTCCACCATGGGAAGATGACGAAACTCCTGCTGATGATGTTTCGAAGC
s cb4.chrX              8934902 195 + 21540570 CTCCAAAGAAAGCTGCAC------------CATCAGCCCCTGC---------------------TAAATCAGCTGTTATACCAAGAGACCCTTCTCCCAAAAAGGCAGCGCCAG-----------------CCAAAACGAAGCCAAAGTTGCCGGAAGTTCCACCAACTCCAGTGAAGAATCCggtcaaaaaatggaagcCTCCATGGGAACAAGATGAGGATCCAGCTGAAGAAGTTGCAGCGC
i cb4.chrX              I 9 I 3
s caeRem4.Crem_Contig0   879210 159 -  4500979 CTCCCAAGAAAGGATTAC------------CA---------GC---------------------GAAATGAACCGT--------------------CTAAAGAAGCTGCTACAG---------------AACCAGAA--AAGCCAA------CGGAAAGCATA-CAACTCCAGTGAAGAACCccgtcaaaaaatggaagccGCCATGGGAGGATGACGACACTCCGGCAGAAGAAATTTCACAGC
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5871754 213 + 20921866 AACCAAAAGAAGCAGTTCCCGCGAAAGACACAAAAACACCTGCAAAACCATCTGatgcagagaaaaaaactcctGTCAAACCACGAGATGCATCACCCAAGAAAGCAGTTGCAA---------------AACCGGAA-----CCAG------------CACCCTCTACTCCCGTGAAGAACCCtgtgaaaaaatggagaccACCATGGGAAGACGAGGAGACTCCAGCTGAAGATGTTTCAAAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154279 183 +  4147112 AACCAGCTGAAT------------------CAAAAACACCAGC------------TGCCGAAAAGAAAGCACCTACAAAACCAAGAGATGCATCTCCTAAAAAAGCAGTTGCAA---------------AACCTGAA-----CCAG------------CTCCAACAACTCCTGTGAAGAACCCCGTGAAGAAATGGAGACCACCATGGGAAGACGACGAGACTCCAGCCGAAGATGTTTCTAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45454 154 -   343467 ---------------------------------------------------------------------AACCTG---ATTCAAGAGATCCATCACCaaaaaaaGTTGTGCCAGCTAAAAAATTGGCGGAGCCTGAG--AAGCCAG------CTG---CTCCATCAACTCCAGTTAAAAATCcggtgaaaaaatggaagccTCCATGGGAGGACGATGAAGTTCCAACAGAAGATGT--------
i caeJap4.Scaffold18142 C 0 C 0

a score=5823.000000
s ce10.chrX             3809063 23 + 17718866 CGACAGATGCTAAGAAAACTCCT
s cb4.chrX              8935100 23 + 21540570 CACCACCAGAAAAGAAAACTCCA
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold630  5871967 23 + 20921866 CAGCAGACGACAAGAAAACACCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154462 23 +  4147112 CATCTGATGATAAGAAAACTCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45608 10 -   343467 -------------AAAGGCTCCT
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   879369  0 -  4500979 C

a score=11067.000000
s ce10.chrX             3809086 108 + 17718866 TCCCTCGCGAAAAAAGATCCAGCTCCTGCAAAAGAGTCACTAAAACCAAAAGCAGATACCAAAGC---------------------------TCCAGCAAAACCCA------------------------------------------------------GAGACCCGTC------------------TCCCAAAAAAGTTGCACCA
s cb4.chrX              8935123 114 + 21540570 GTATTAGCTAAGAAGGCTCCTGCTGCTGAC---------GCAAAACCCAAAGATACTCCCAAACCAGAA------------------------CCCGCAAAAGTAG------------------------------------------CAGCCAAGCCTCGAGATCCTTC------------------TCCAAAGAAAGCAGTTCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5871990 207 + 20921866 TCACTGGCGAAAAAAGATCCTGCTCCTGCAAAAGAACcggaaaaaccgaaaactgCTGCCAAGCCGAGAGATCCATCACCAAAGAAGGCAGTTCCAGCGAAAGTGGACCCGAAAAATCCTGAAGTTCCACCTACTCCAGTGAAAAATCCGGTTAAGAAATGGAAACCTCCATGGGAAGCAGATGAAGATCCAGCAGAAGAGGTTGCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154485 204 +  4147112 TCTCTGGCTAAAAAAGATCCTACTCCAGCCAAAGAGCcagaaaaacctaaaactgcGGCGAAGCCAAGAGATTCTTCTCCAAAGAAAGC---TCCTGCTAAATCAGATCCAAAGACTCCTGAAGTTCCACCAACTCCAGTCAAGAATccagtcaaaaaatggaaaccgCCATGGGAGGCTGATGAGGATCCAGCAGAAGAAGTTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   45618   0 -   343467 C
e caeRem4.Crem_Contig0   879369   0 -  4500979 C

a score=-311.000000
s ce10.chrX             3809194 1 + 17718866 A
s cb4.chrX              8935237 1 + 21540570 A
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  5872197 1 + 20921866 C
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2154689 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142   45618 1 -   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   879369 0 -  4500979 C

a score=2500.000000
s ce10.chrX             3809195 11 + 17718866 CTGCTCCAGAG
s cb4.chrX              8935239 10 + 21540570 ATCTACCAAG-
i cb4.chrX              I 1 I 117
s caeRem4.Crem_Contig0   879369 11 -  4500979 CTGttccagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5872204 11 + 20921866 CACCTcccgaa
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2154696 11 +  4147112 CTCCgccagaa
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142   45619 11 -   343467 CTGTTCCTGAA
i caeJap4.Scaffold18142 C 0 C 0

a score=7139.000000
s ce10.chrX             3809206  82 + 17718866 AAGAAAACACCAGTTTTGGCAAAAAAAGAGC---------CAGCGGGTCCAGCCGACAGTAAGA------------CTAAAGAGCCAGA---AAAGTCT------AAGCCAC
s cb4.chrX              8935366  67 + 21540570 AAGAAGACCCCTTCACTTGCCAAGAAAG------------CTCCATCACCTG------------------------CAAAAGAACCAGA---GAAGTCT------AAACCTG
i cb4.chrX              I 117 T 540
s caeRem4.Crem_Contig0   879380  91 -  4500979 aagaaaactcCTGTTCTAGCCAAGAAGGAAC---------CTGCAAAACCTGTTGCTGATA---CAAAG------CCTAAAGAAACTCC---AAAGCTTCTAGAAAAGCCAG
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5872215 109 + 20921866 aagaaaactccAATTCTGGCGAAGAAGGAACCGGCTC---CTGCAAAACCAGCTGCTGAAAAGCCAAAAGATACACCGAAAGCAGCACCAGAAAAAGTAGCTGCCAAACCAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154707 106 +  4147112 aagaaaactccTGTTTTGGCAAGAAAAGAACCAGCAT---CTTCAAAACCTGTTGACAGTAAAccgaaagaagctccgaaagaagctcc---aaaagCGGCTGCCAAACCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45630  58 -   343467 AAGAAAACACCAGTTCTAAAAAGAAAAGAGCCGACTACAGCTGCAAAACCTGTATCAA------------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=91206.000000
s ce10.chrX             3809288 262 + 17718866 GGGATCCATCACCAAAGAAAGCGGTACCG---------GCAAAACCTGTTCCAAAAACTGAAGTAGCACCTGCGGCT------------GTTAAAAAACCAGAACCTATTTCTAAACCGAAGGACACAGCACCAAAAAAAGCGGAACCCAACTCACCCGTTGTTCCTCCAACGCCAGTGAAGAACCCGGTTAAAAAGTGGAAGCCGCCATGGGAGGACGACGATGCTCCAGCTAAACCAGTAA---GTCTCCCAGA---ACCTGAAAAAAAGACTCCAGTTCTTGCAAA
s cb4.chrX              8934893 241 + 21540570 GCGATCCATCTCCAAAGAAAGCTGCACCATCAGCCCCTGCTAAA---------------------------TCAGCT------------GTTATACCAAGAGACCCTTC------TCCCAAAAAGGCAGCGCCAGCCAAAACGAAGCCAAAGTTGCCGGAAGTTCCACCAACTCCAGTGAAGAATCCggtcaaaaaatggaagcCTCCATGGGAACAAGATGAGGATCCAGCTGAAGAAGTTGCAGCGCCACCACC---ACCAGAAAAGAAAACTCCAGTATTAGCTAA
i cb4.chrX              T 540 C 0
s caeRem4.Crem_Contig0   879483 220 -  4500979 GCGATCCATCAGCTAAAAAAGCAGTACCA---------GTAAAA---------------------------GAGCCT------------GTCAAACCAAGAGATCCATC------TCCaaaaaaaGCCGTTCCAGCCAAATCTGAACCA---------GAAGTGCCCCCAACTCCTGTGAAGAATCCTGTTAAGAAGTGGAAACCACCATGGGAAGATGACGATACTCCTGCAGAAGAAGTT------CCACAGCCTGGtccagaaaagaaaactcCTGTTCTTGCTAA
i caeRem4.Crem_Contig0  I 12 T 300
s caeSp111.Scaffold630  5872324 244 + 20921866 GTGATGCTTCTCCGAAGAAAGCTGCTCCA---------AGCAAA---------------------------GATCCGGTCAAAGCTCCCGCCAAACCAAGAGATCCTTC------ACCCAAGAAAGCAGTTCCAGCCAAAGTCGACTCCAAAATTCCTGAAGTTCCACCGACTCCAGTGAAGAATCCGGTTAAGAAATGGAAACCTCCATGGGAAGCAGATGAAGATCCAGCAGAAGAAGTTGCTCAGCCACCACT---TCCCGAGAAGAAAACTCCAGTTCTAGCAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154813 229 +  4147112 GAGAtccatctccaaaaaaagctGTTTCG---------TCAAAA---------------------------GAACCA------------GCCAAGCCAGCTGAGACTTC------ACCGAAGAAAGCAGTTCCTGCAAAGGTTGATCCAAAACCTTCTGAAGCGCCAACAACCCCAGTTAAGAATccagtgaaaaaatggaaacctCCATGGGAAGATGATGATACACCCGCTGACGAAGTGA---AGGCCCCGGA---ACCGGAGAAGAAAACACCAGTGCTTGCGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   45688 163 -   343467 GAGATTCATCGCCGAAAAAAGTTGTACCA---------GCTAAG---------------------------AAACCA------------TCAGAACCAGAAAAACCGAT---------------------------------------------------TGCTCCGCCTACACCAGTAAAAAATCCGgttaaaaaatggaaaccACCATGGGAAGACGACGAAAAACCAGcagaaaatgtgg---aaaagtTAGA---TCCGGAGaa---------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=544.000000
s ce10.chrX             3809550 17 + 17718866 AAAAGCACCAACGAAGC
s cb4.chrX              8935134 12 + 21540570 GAAGGCTCCTGC-----
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   879403 17 -  4500979 GAAGGAACCTGCAAAAC
i caeRem4.Crem_Contig0  T 300 I 27
s caeSp111.Scaffold630  5872568 12 + 20921866 GAAGGAACCAAC-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2155042 17 +  4147112 AAAAGCCCCGCCCAAGC
i caePb3.Scfld02_0      C 0 T 319
s caeJap4.Scaffold18142   45851  9 -   343467 aaaaaCGCC--------
i caeJap4.Scaffold18142 C 0 C 0

a score=0.000000
s ce10.chrX             3809567 11 + 17718866 CGGACTCGGAA
e caePb3.Scfld02_0      2155059 319 +  4147112 T
e caeJap4.Scaffold18142   45860  0 -   343467 C
e cb4.chrX              8935146 25 + 21540570 I
e caeSp111.Scaffold630  5872580  0 + 20921866 C
e caeRem4.Crem_Contig0   879420 27 -  4500979 I

a score=-24395.000000
s ce10.chrX             3809578 53 + 17718866 -GCAGCAGCGGATCCTGTTAGTGGTCCTTCATCTAAAG----------ATCCAAAATTAGCAAA
s cb4.chrX              8935171 62 + 21540570 -CCCAAACCAGAACCCGCAAA-AGTAGCAGCCAAGCCTCGAGATCCTTCTCCAAAGAAAGCAGT
i cb4.chrX              I 25 I 24
s caeRem4.Crem_Contig0   879447  9 -  4500979 ------------------------------------------------CTCCAAAGC-------
i caeRem4.Crem_Contig0  I 27 I 247
s caeSp111.Scaffold630  5872580  9 + 20921866 ------------TCCTGCCAA-------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154740 49 +  4147112 -GCATCTTCAAAACCTGTTGACAGTAAAccgaaagaag----------ctccgaaagaag----
i caePb3.Scfld02_0      T 319 I 4
s caeJap4.Scaffold18142   45860 12 -   343467 TTCATTGGCGAA----------------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=5539.000000
s ce10.chrX             3809631 61 + 17718866 GAAGGCGCCTGTGAAGCCCAGAGACCC---CTCTCCAATGAAAGCGGTCCCAATTAAACCCGCA
s cb4.chrX              8935257 58 + 21540570 GAAAACCCCAGTCAAACCGAGAGATGC---TTCACCAAAGAAAGCTGTA---GCCAAACCTGAA
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0   879703 61 -  4500979 GAAGGAACCTGCCAAGCCGAGAGACCC---ATCCCCGAAAAAGGTGGTACCTGTGAAGTCTGAA
i caeRem4.Crem_Contig0  I 247 T 252
s caeSp111.Scaffold630  5872589 48 + 20921866 GACAACggctgaaaaaccaaaagataC---ACC------AAAGGCTGTGCC-GGAAAA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2154793 54 +  4147112 aaaagCGGCTGCCAAACCAAGAGAtcc---atctccaaaaaaagctGTTTC-GTCAAA------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   45872 31 -   343467 ------------------AAAAGACCCGATTTCTGCAAAAGAACCAGCG---------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-8877.000000
s ce10.chrX             3809692 27 + 17718866 CCAAAAACTGAAGTACCACC--------AGCGGTA
s cb4.chrX              8935315 33 + 21540570 CC--AGCTTCAAGTACCTCTCCTGCGGAAGATGTT
i cb4.chrX              C 0 I 60
s caeSp111.Scaffold630  5872637  7 + 20921866 ----------------------------GGTTGCT
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2154847  7 +  4147112 ----------------------------AGAACCA
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142   45903 12 -   343467 ------------GCAAAACC--------AGCA---
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   879764 252 -  4500979 T

a score=-3805.000000
s ce10.chrX             3809719 25 + 17718866 GTTAAAAAACCGG---------AGCCCGTTGCAA
s cb4.chrX              8935408 31 + 21540570 ---AAAGAACCAGAGAAGTCTAAACCTGCTGCAA
i cb4.chrX              I 60 I 3
s caeRem4.Crem_Contig0   879512 16 -  4500979 GTAAAAGAGC------------------CTGTCA
i caeRem4.Crem_Contig0  T 252 I 3
s caePb3.Scfld02_0      2154858 12 +  4147112 ----------------------AGCCAGCTGAGA
i caePb3.Scfld02_0      I 4 I 189
s caeJap4.Scaffold18142   45915 10 -   343467 GATAAAAAAC------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5872644  7 + 20921866 I

a score=0.000000
s ce10.chrX             3809744 3 + 17718866 AAT
e caePb3.Scfld02_0      2154870 189 +  4147112 I
e caeJap4.Scaffold18142   45925 0 -   343467 C
e cb4.chrX              8935439 3 + 21540570 I
e caeSp111.Scaffold630  5872644 7 + 20921866 I
e caeRem4.Crem_Contig0   879528 3 -  4500979 I

a score=22099.000000
s ce10.chrX             3809747 40 + 17718866 CGAGAGATCCATCACCGAAAAAAG---------CAAAAGCTGAACCAAA
s cb4.chrX              8935442 46 + 21540570 CTAGAGATCCATCGCCAAAGAAAGCAGCTCTTGCAAAACCAG---CAGA
i cb4.chrX              I 3 I 6
s caeRem4.Crem_Contig0   879531 49 -  4500979 CAAGAGATCCATCTCCaaaaaaaGCCGTTCCAGCCAAATCTGAACCAGA
i caeRem4.Crem_Contig0  I 3 I 184
s caeSp111.Scaffold630  5872651 49 + 20921866 CAAGAGATCCATCaccaaagaaaacaattccaTCAAAGGTTGATCCTAA
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0      2155059 43 +  4147112 AAAGAGATCCTTCTCCGAAAAAAGCAGTCCCAGCAAAAATTGA------
i caePb3.Scfld02_0      I 189 I 1
s caeJap4.Scaffold18142   45925 43 -   343467 ---GAGATCCTTCGCCAAAGAAAC---CTTCGGCGAAGAAAGAACCAGA
i caeJap4.Scaffold18142 C 0 C 0

a score=-2487.000000
s ce10.chrX             3809787 4 + 17718866 --CTCT
s cb4.chrX              8935494 4 + 21540570 --GACT
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold630  5872700 3 + 20921866 ---ACC
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold18142   45968 4 -   343467 AAAA--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2155102 1 +  4147112 I
e caeRem4.Crem_Contig0   879580 184 -  4500979 I

a score=176477.000000
s ce10.chrX             3809791 715 + 17718866  
s cb4.chrX              8935498 750 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   879764 733 -  4500979  
i caeRem4.Crem_Contig0  I 184 C 0
s caeSp111.Scaffold630  5872704 622 + 20921866  
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2155103 685 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   45972 596 -   343467  
i caeJap4.Scaffold18142 C 0 I 426

a score=81207.000000
s ce10.chrX             3810506 209 + 17718866 CTAGAGATCCTTCTCCAAAGAAAGCAGCTCCAGTCGCAGCAAAGCCAGAT----------CCCAAAATTCCTGAGGTACCTCCGACT---------CCCGTTAAAAATCCTGTGA-------------------------AAAAATGGAAACCACCATGGGAGGAT------------GACGATGAGCCATCGGAGCCTGTTTCAGCGCCAGAACCGGAAAAGAAGACACCAGTTCTTGCGAAAAAAGCACCAACGAAGCCTGCT
s cb4.chrX              8936248 209 + 21540570 CACGTGACCCGTCTCCAAAGAAAGCAGTAC------CTGCAAAAGTGGAT----------CCAAAGCTCCCAGAAGCTCCCGTGACT---------CCCGTCAAGAATCcagtga-------------------------aaaaatggaaaccaCCATGGGAGGCTGACGATGATGAGGATGATACGCCAGCTGAGCCAGTCAAAGAGCCGGAACCGGTAAAGAAAACTCCCGTTTTGGCAAAGAAAGCTCCAGCCAAG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   880497 197 -  4500979 CGAGAGACCCATCCCCAAAGAAAGCGGTTC------CAGTAAAATCAGA-------------------ACCAGAAGCTCCACCAACA---------CCTGTGAAAAATCCAGTGA-------------------------AGAAATGGAAACCCCCATGGGAAGATGAC---------GATGACACACCAGCTGAGCCAGTGAAAATACCAGAACCAGTCAAGAAGACTCCGACACTTGCTAAGAAAACGCCGACTAAGCCAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5873326 194 + 20921866 CAAGAGACCCGTCGCCCAAGAAAGCTGTTC------CTGCGAAAACTGA-------------------GCCTGAAGTCCCTCCGACG---------CCAGTCAAGAATCCAGTAA-------------------------AGAAATGGAAACCTCCAtgggatgat------------gatgatacaCCGGCCGAACCAGTGAGTGAACCAGAGCCCCCAAAAAAGACACCTGTGTTAGCCAAAAAAGCCCCAGCTAAACCAGCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2155788 194 +  4147112 CAAGAGATCCATCACCAAAGAAAGCAGTAC------CTGCGAAAACAGA-------------------ACcagaagctccgcccact---------ccaGTGAAGAACCCAgtta-------------------------aaaaatggaaacctCCATGGGAAGAC------------GATGATGCTCCAGCAGAACCAGTAAGCGAACCTGAACCGGCAAAGAAAACACCCGTGTTGGCGAAAAAGGCACCAGCTAAACCTTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   46994 223 -   343467 CAATCGATAAACCGGCAGACAAGCCAGTTG------CTACACCAGTCGACAAGCCTGCCGCCAAACCGACCGAAAAACCAGCTGAAAAGCCAAAACCAAAGGAAGAACCCAAGAAAGCGGAACCATCGAACGGCAGCCCTAAAAATGGAGACCACCATGGGAAGAA------------GAC------CCAGATGAACCAG---------AAGAACCGGAAACAGATTCACTAGTGCCTGCTCCAAAGAAGCCGGTT---------
i caeJap4.Scaffold18142 I 426 T 638

a score=-502.000000
s ce10.chrX             3810715 3 + 17718866 ACA
s caeRem4.Crem_Contig0   880694 3 -  4500979 GGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5873520 3 + 20921866 TCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2155982 3 +  4147112 ACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   47217 638 -   343467 T
e cb4.chrX              8936457 0 + 21540570 C

a score=157288.000000
s ce10.chrX             3810718 358 + 17718866 AAACCGG---------ATTCAGAAGCAGCAGCGGATCCGGTTAGTGGTCCAACAT------CTAAAGATCCGAAACTCAGCAAAAAAGCACCGGTGGAAAAACCGAAACCGA---------------CTACTGATCCAAAAGATGACAAACTAAAACCTTC---------------------GCCAGCTAAAAAACC------------------TGAGAAGGCACCGGAG---CCGGCAGCACCGAAAAAATGGAAACCCGTCTGGGATGATGATCCGGAT---------GAACCAGAAGCAGATTTCACAGTTCCAGCACCAAGTAAAA---AACCG--GATACTGAAGATCCAGCAGACCCTCTCGGTGGACCTAAAACAAAAGATCCAAAACTGAACAAAAAAGCACCAGCTGAAAAGCCAACTGAAAAAC------------------------------------------CCAAACCAA
s cb4.chrX              8936457 331 + 21540570 AAACCAG---------ACACTGAAAAGCCTGCTGAACCAGTAAGTGGACCTACTG------CGAAGGATCCAAGACTCAGTACTAAAGCTCCCGCTGAGAAGCCAAATCCTG---------------CTACTGCTCCACCAAAAGATACACCAA---------------------------------------AAGC------------------TGTGGATCCACCAAAA---CCAGCTGCTCCAAAGAAATGGCGACCATCGTGGGAAGATGATCCAGAT------GACGAGCCAGAAGCTGATTTCACGGTACCTGCTCCAGCaaaaa---aaCCA--GACACTGAAGACGCAGCTGGTCCATTAGGAGGTCCGAAATCGAAAACACCAGCACTTGGCAAAAAGGCGCCAACCGACAAGCC------------------------------------------------------GAAACCAG
i cb4.chrX              C 0 I 111
s caeRem4.Crem_Contig0   880697 334 -  4500979 AAACCCG---------ACTCAGAAAATCCAGCAGAGCCTGTGAGCCGTCCAACTT------CAAAAGATCCCAAACTCAGTACCAAAGCACCCACAGAGAAACCGAAGCCAG---------------CTGCCGCACCCAAAGAGGAAAAGCCAG---------------------------------------AACC------------------GGCGCCGGCAGCAGAGCCTCCAGTAAAACCCAAAAAGTGGAAGCCGCCATGGGAAgacgattcagaa------gaagagccAGAAGCTGATTTCACCGTTCCTGCGCCAAGCAAGA---ATCCT--GACACTGAAGATCCAGCCGATTCTCTTGGAGGACCAAAAGGGAAAGATCCGAAACTTGCTAAAAAAGCTCCAACTGAAAAACC------------------------------------------------------TAAACCGA
i caeRem4.Crem_Contig0  C 0 I 118
s caeSp111.Scaffold630  5873523 352 + 20921866 AAGTCAG---------ACACGGAGAAACCAGCTGATCCTCTGAGTGGTCCTTCTT------CGAAAGATCCTAAACTAAGTACTAAAAAACCGACGGAAAAACCAAAGCCTG---------------CTTCTGATCCAAAAGCGGAGAAACCAGCTACT---------------------------------AAACC------------------CGCCGAACCAGCGAAA---CCTGTTGCACCCAAGAAGTGGAAGCCTCCATGGGAGCCGGATTCGGAGCCTGAAGAAGAGCCAGAGGCTGACTTCACAGTGCCAGCCCCATCTAAATCCAAGCCG--GATACTGATGATCCAGCTGATCCATTAGGAGGTCCAACGTCTAAAACTCCAGCCCTGGCCAAGAAAGCACCAGccaaaaaacca---gaaga---------------------------------------------gaAGCCGA
i caeSp111.Scaffold630  C 0 I 33
s caePb3.Scfld02_0      2155985 334 +  4147112 AAACCGG---------ATTCAGAAAATCCAGCAGAACCTGTAAGTGGTCCATCCT------CCAAAGATCCAAAACTCAGCACaaaaaaaCCGGCTGAGAAACCGAAGCCAG---------------C------ACCAAAGGAAGAGAAGCCAGCATCC---------------------------------AAACC------------------AGCAGAACCAGCTAAA---CCTGCAGCTCCTAAGAAGTGGAGACCTCCATGGGAAGATGATCCGGAT------GATGAGCCAGAAGCTGACTTCACGGTTCCAGCTCCATCAAAGCC--AGCCGCCGATACTGAAGATCCAGCTGATCCACTGGGAGggccaaaatcgaaaactcctgttctttccaaaaaagctCCAACTGACAAACC------------------------------------------------------GAAACCAG
i caePb3.Scfld02_0      C 0 I 108
s caeJap4.Scaffold18142   46579 478 -   343467 AAACCGGCTGACAAGACTACTGAAAACCCAGCTGAACCTGTGACTGGACCCTCAGATCCgaaaaaagatccaaaactagcaataaagaaaccaactgaaaaaccaaaaactgaaacatcaaaaagtccaaccaaGCCAGACGCAGATAAGCCAAAACTCGCCAAGAAAGCTCCTGCGGAAAAACCAGCTGACAAACCAAAGGAGGAACCAAAGAAAGTTGAACCATCGAAA---CCAGCTGCACCAAAGAAATGGAGACCACCATGGGAAGAAGACCCAGATGAGGCAGAAGAACCGGAAGCAGATTTTACGGTGCCTGCTCCaaaaaaaC---CGACC--GACTCTGAAAACCCTGCTGAACCTGTGAGTGCTCCAAAGCCAAAAGATCCAAAACTCGCGAAGAAAACTCCGGCAACAAAACCAATCGATAAACCGGCAGACAAGCCAGTTGCTACACCAGTCGACAAGCCTGCCGCCAAACCGA
i caeJap4.Scaffold18142 T 638 C 0

a score=3528.000000
s ce10.chrX             3811076 10 + 17718866 AAGAAGTGTC
s cb4.chrX              8936899 10 + 21540570 AGGAAAAGCC
i cb4.chrX              I 111 C 0
s caeSp111.Scaffold630  5873908 10 + 20921866 CGGATAAGCC
i caeSp111.Scaffold630  I 33 I 3
s caePb3.Scfld02_0      2156427 10 +  4147112 aggaaaaacc
i caePb3.Scfld02_0      I 108 I 3
s caeJap4.Scaffold18142   47057 10 -   343467 CCGAAAAACC
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   881031 118 -  4500979 I

a score=127096.000000
s ce10.chrX             3811086 193 + 17718866 ------------------A---AAAGAACCACCGAAACCAACAGAGCCACCTAAACCAGCTGCGCCGAAGAAATGGAAACCACCATGGGAAGATGATCCA------GA---------TGAGCCAGAAGCTGATTTCACAATGCCGGCTCCA---AAGAAACC---TGACACTGAAGATCCAGCTGATTCCCTCGGTGGACCCAAACCAAAGGATCCTAAGTTAGCAAAGAAAGCT
s cb4.chrX              8936909 205 + 21540570 ------------------G---AAGGAAGCACCGAAGCCAGCTGAACCACCTAAACCTGCAGCTCCTAAGAAATGGAAACCGCCATGGGAACTGGATTCTGAACCAGA------GGATGAGCCGGAAGCTGATTTTACTGTTCCAGCACCAAGCAAAAAACC---TGATACGGAAGATCCCGCCGACCCGCTTGGTAGACCAAAGAAAACGGATCCAAAGCTTGCCAAAAAGGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   881149 199 -  4500979 ------------------A---AAGGAGCCGTCTAAACCGGTCGAGCCACCAAAACCAGCTGCACCAAAGAAGTGGAGACCGCCTTGGGAAGATGATCCT------GA------TGACGAGCCAGAAGCCGATTTCACGGTTCCTGCGCCAAGCAAGAAGCC---TGATACAGAAGATCCAGCTGACCCACTTGGTGGACCAAAAGGTAAAGATCCGAAACTGGCAAAGAAGGCG
i caeRem4.Crem_Contig0  I 118 C 0
s caeSp111.Scaffold630  5873921 205 + 20921866 ------------------ACCGAAGGAAGAACCAAAACCAGAAGAACCACCAAAGCCGGCTGCACCGAAGAAGTGGAAGCCTCCATGGGAACCCGACTCA------GA---GCCTGAAGAGCCAGAAGCTGATTTCACTGTGCCGGCACCAAGTAAAAAACC---AGATACGGAAGATCCAGCTGATGCTTTAGGAGGTCCATCTCCGAAAGATCCAAAGTTATCTAAAAAAGCT
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2156440 199 +  4147112 ------------------a---gaggacaaaccgaaaccagcagaaccgccaaaaccagCAGCTCCGAAGAAATGGAGACCACCATGGGAAGATGATCCG------GA------TGATGAGCCTGAAGCAGATTTCACTGTTCCTGCACCCAGTAAAAAGCC---TGACACTGAAGACCCAGCAGATCCACTAGGTGGtccaaaaccaaaagatccaaaactatccaagaaaact
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   47067 219 -   343467 AGCTGAAAAGCCAAAACCA---AAGGAAGAACCCAAGAAAGCGGAACCATCGAA--CGGCAGCCCTAA--AAATGGAGACCACCATGGGAAGAAGACCCA------GATGAACCAGAAGAACCGGAAACAGATTCACTAGTGCCTGCTCCA---AAGAAGCCGGTTGACTCCGAAGACCCAGCCGAACCGGTGAGTGCTCCTAAGCCAAACAATCCAAAACTCGCGAAAAAAGCT
i caeJap4.Scaffold18142 C 0 I 144

a score=807006.000000
s ce10.chrX             3811279 1339 + 17718866  
s cb4.chrX              8937114 1344 + 21540570  
i cb4.chrX              C 0 I 249
s caeRem4.Crem_Contig0   881348 1323 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5874126 1321 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2156639 1320 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   47430 1385 -   343467  
i caeJap4.Scaffold18142 I 144 C 0

a score=519121.000000
s ce10.chrX             3812618 693 + 17718866  
s cb4.chrX              8938707 726 + 21540570  
i cb4.chrX              I 249 I 6
s caeRem4.Crem_Contig0   882671 678 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5875447 662 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2157959 663 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   48815 714 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=5082.000000
s ce10.chrX             3813311 12 + 17718866 GAAGATCCAGAT
s cb4.chrX              8939439 12 + 21540570 GATGAGCCAGAA
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold630  5876109 12 + 20921866 GCAGATTCGGAG
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2158622 12 +  4147112 CAAGACCCAGAT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   49529 12 -   343467 GAAGACCCAGAT
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   883349 15 -  4500979 I

a score=461656.000000
s ce10.chrX             3813323 712 + 17718866  
s cb4.chrX              8939451 795 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   883364 765 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5876124 724 + 20921866  
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2158637 823 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   49541 784 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=1277.000000
s ce10.chrX             3814035 3 + 17718866 AAG
s caeRem4.Crem_Contig0   884129 3 -  4500979 AAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5876848 3 + 20921866 ACG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159460 3 +  4147112 GAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   50325 3 -   343467 GAG
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8940246 0 + 21540570 C

a score=546.000000
s ce10.chrX             3814038 1 + 17718866 T
s caeSp111.Scaffold630  5876851 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159463 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   50328 1 -   343467 T
i caeJap4.Scaffold18142 C 0 I 4
e cb4.chrX              8940246 0 + 21540570 C
e caeRem4.Crem_Contig0   884132 0 -  4500979 C

a score=0.000000
s ce10.chrX             3814039 458 + 17718866 CGGCCCCCAACACTGAACTTCAAAAATATACCGTAAAAATAATCAAGTTACATTTGATTTTAGTAGTTTTTTAATGAAATTGAATTGAGAAGTTCAATTGTTGTTCCAAGAGTTTTTAATTTTTTCCAAAGTTGTGCCAAAATGGCCAAATGTTATAAGTAGTAAAACTTTTTAAAATATATCAGATATTTTTTATTAAGAGTCAAAAAGTGAAAAGTGAAAAAGTGAGTTTTTGCCACTTTTTGAGAAGTACCATTGTTTGAATTCCTACAATGTTTGAATATTAACATTTGAAGCATAGGTATACTATAAAATTCAAAGACAATTTTTTATCAAAGTTTTCCATAAAAATTGCAAAAACTGAAATATTACCAATTTTCAAAAAATCAAATGAATTTAAGAAAAGCATTTTCCCCGCTGGCACTCCACCTTTGATCAATTTTCTAGCATTTCTCAAC
e caePb3.Scfld02_0      2159464   1 +  4147112 I
e caeJap4.Scaffold18142   50329   4 -   343467 I
e cb4.chrX              8940246   0 + 21540570 C
e caeSp111.Scaffold630  5876852   0 + 20921866 C
e caeRem4.Crem_Contig0   884132   0 -  4500979 C

a score=522.000000
s ce10.chrX             3814497 21 + 17718866 AAGAATTATATGCTTTTAAAA
s cb4.chrX              8940246 17 + 21540570 AAGAGTT----GCTGTGAAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2159464  1 +  4147112 I
e caeJap4.Scaffold18142   50329  4 -   343467 I
e caeSp111.Scaffold630  5876852  0 + 20921866 C
e caeRem4.Crem_Contig0   884132  0 -  4500979 C

a score=67.000000
s ce10.chrX             3814518 1 + 17718866 T
s cb4.chrX              8940263 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5876852 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159465 1 +  4147112 C
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18142   50329 4 -   343467 I
e caeRem4.Crem_Contig0   884132 0 -  4500979 C

a score=-4257.000000
s ce10.chrX             3814519  2 + 17718866 ----------TT
s cb4.chrX              8940264  8 + 21540570 TTGTACac----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   884132 11 -  4500979 -TGTTCATCAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5876853  2 + 20921866 ----------TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159466  2 +  4147112 ----------TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   50329  4 -   343467 I

a score=194390.000000
s ce10.chrX             3814521 318 + 17718866 TTAAATAGTTCTCTGAAGCTTATCAATGATCAATTTTCAGAAAGGAAAAAGTCAAGGTATCATTCCATTATTGGCTAAAGGAACAACTTATCATCCTCACGGCGAGTATGGAACTATTCGCAGACAGGtatatat-------------tttttataattttttaGTGTTA----TGCTCCTT--GTTCAGACTGCTGATGTAAAGTACAAAGATGGCTGGAAACCTGGAATGGATAGCGAATCGCATGGTTTTATTTCTCGACAATTCATTGCGAATTCAAAGGAAAAAGCTGGAAGTAACTTGTTGGACAAGAGGCGAACTATTGTGAGTCCCTGT
s cb4.chrX              8940272 307 + 21540570 ----ata---ttcagaaaattggta---------TTTCAGAAAGGTAAAAGTAACTCTATCATTCCGTTGCTGGCAAAGGGAACTACGTACCACCCACATGGAGAATATGGAACTATTAGAAGACAGGCAAGTCTTAGAAc-------tatcaaaaatgaattttatttaaaaaaat-------attcagactGCTGATGTTAAGTACAAAGATGGATGGAAACCTGGAATGGATGCCGAATCTCATGGTTTCATTTCCCGACAATTTATTGCCAATTCGAAGGAGAAAGCAGGAAGCAACTTATTGGACAAACGAAGAACCATTGTGAGTCCCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   884143 307 -  4500979 TTTAACA---TTCcaagaaatagtaaa------ttttcagaaaggtaAAAGTAATGGAATCATCCCACTATTGGCTAAAGGTACTACTTATCACCCACATGGAGAATATGGAACTATAAGAAAACAGGTTAATGCCAGGTC-------C--------Ttgattttctt------aatttcttgGTTTCAGACTGCTGATGTGAAATACAAAGACGGATGGAAACCTGGAATGGAGAAGGATTCGCATGGTTTCATTTCCAGACAGTTTATTGCCAACTCGAAAGAAAAGGCTGGAAGCAACTTGTTAGACAGACGAAGAACAATTGTAAGTTCCCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5876855 313 + 20921866 CTGAGTG---ATTGAAGTAAAATTATAGACTGCTTTTCAGAAAGGTAAAAGTCAAGGAATTATTCCATTATTGGCTAAAGGTACAACTTACCATCCACATGGAGAATACGGTACAATTAGAAGACAGGTA---AGGCGAAT-------TCAAAATAGTTGTGTCAAGACA----AGT-------TTCTAGACTGCTGATGTCAAATACAAAGACGGTTGGAAACCAGGAATGGAGAAAGAGTCCCATGGCTTCATTTCGAGACAGTTCATTGCTAATTCGAAGGAAAAAGCTGGTAGCAACTTACTTGACAAACGAAGAACTATTGTAAGTCCCTGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159468 314 +  4147112 TCAAATG---TTGGGTGAGGCCTCAAggaaagaatttcagaaaggtAAAAGCAATTCAATTATTCCGTTACTGGCTAAAGGAACAACATATCATCCTCATGGAGAATATGGAACCATTAGAAGACAggtattcatttgaaa-------ttgaaaaa--tgatttatttcc----tgt-------tttcagACAGCTGATGTGAAATACAAAGATGGCTGGAAACCTGGAATGGATATGGAATCTCATGGTTTCATTTCTCGTCAATTCATAGCCAATTCAAAAGAGAAAGCTGGAAGCAATTTGCTAGATAAACGAAGAACAATCGTAAGTTCCCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   50333 322 -   343467 ttgaata---ttttttcaaattagaaTAACTAATTT--AGAAAGGTGAGAGTAATGGTATTATTCCATTACTGGCAAAGGGCGCTACCTATCATCCTCATGAAGAGTATGGAACTATCAGGCGACAGGTA-CCactaaaacgtttttttttcaataaataattaaaataa----tGTTT-----ATTCAGACTGCTGATGTTAAATACAAAGACGGTATGAAACCAGGAATAGACAGTGAATCACACGGGTTTATTTCTCGTCAATTCATTTCCAATAGTAAAGAAAAGGCGGGAAGTAATATTCTGGATAAACGAAGAACCATTGTAAGTTTCTTT
i caeJap4.Scaffold18142 I 4 I 37

a score=-8664.000000
s ce10.chrX             3814839 29 + 17718866 AATT--------TACAGAAAAAAATTGACATCGGCTG
s cb4.chrX              8940579 12 + 21540570 --CT--------TACAAAC---------------TTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   884450 23 -  4500979 Gagt--------tgcaaaa---aaataa---gGGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5877168 20 + 20921866 TTTT--------CTCGTAA---AGTTAA------ATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159782 31 +  4147112 AATTAagcaaaactggaaattcaagTAG------TTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   50655 37 -   343467 I

a score=200444.000000
s ce10.chrX             3814868 474 + 17718866  
s cb4.chrX              8940591 410 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   884473 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5877188 421 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2159813 455 +  4147112  
i caePb3.Scfld02_0      C 0 I 331
s caeJap4.Scaffold18142   50692 398 -   343467  
i caeJap4.Scaffold18142 I 37 C 0

a score=273.000000
s ce10.chrX             3815342 1 + 17718866 A
s caeSp111.Scaffold630  5877609 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 3
s caeJap4.Scaffold18142   51090 1 -   343467 A
i caeJap4.Scaffold18142 C 0 I 10
e caePb3.Scfld02_0      2160268 331 +  4147112 I
e cb4.chrX              8941001 1 + 21540570 I
e caeRem4.Crem_Contig0   884928 1 -  4500979 I

a score=180.000000
s ce10.chrX             3815343 1 + 17718866 T
s cb4.chrX              8941002 1 + 21540570 c
i cb4.chrX              I 1 I 2
s caeRem4.Crem_Contig0   884929 1 -  4500979 T
i caeRem4.Crem_Contig0  I 1 I 51
s caeJap4.Scaffold18142   51101 1 -   343467 T
i caeJap4.Scaffold18142 I 10 C 0
e caePb3.Scfld02_0      2160268 331 +  4147112 I
e caeSp111.Scaffold630  5877610 3 + 20921866 I

a score=666.000000
s ce10.chrX             3815344 20 + 17718866 TAAACGAATACAACACGAAA
s cb4.chrX              8941005 18 + 21540570 tttttgaat--gacaAGGAA
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold18142   51102 20 -   343467 TAAGcgatttcaaaaagaaa
i caeJap4.Scaffold18142 C 0 I 191
e caePb3.Scfld02_0      2160268 331 +  4147112 I
e caeSp111.Scaffold630  5877610  3 + 20921866 I
e caeRem4.Crem_Contig0   884930 51 -  4500979 I

a score=-4852.000000
s ce10.chrX             3815364 773 + 17718866  
s cb4.chrX              8941023 544 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2160268 331 +  4147112 I
e caeJap4.Scaffold18142   51122 191 -   343467 I
e caeSp111.Scaffold630  5877610   3 + 20921866 I
e caeRem4.Crem_Contig0   884930  51 -  4500979 I

a score=302.000000
s ce10.chrX             3816137 2 + 17718866 ta
s cb4.chrX              8941567 2 + 21540570 ca
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2160599 2 +  4147112 TA
i caePb3.Scfld02_0      I 331 C 0
e caeJap4.Scaffold18142   51122 191 -   343467 I
e caeSp111.Scaffold630  5877610 3 + 20921866 I
e caeRem4.Crem_Contig0   884930 51 -  4500979 I

a score=132.000000
s ce10.chrX             3816139 2 + 17718866 tt
s cb4.chrX              8941569 2 + 21540570 at
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630  5877613 2 + 20921866 TT
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2160601 2 +  4147112 GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   51122 191 -   343467 I
e caeRem4.Crem_Contig0   884930 51 -  4500979 I

a score=13505.000000
s ce10.chrX             3816141 218 + 17718866 ttta--aaattcaatttt----tttttCTCAA--------TTTTCAGACTGCACCGTCGCTAGTCAGATAAAAGGAATTTCT----CTCCAATGTACACCACACATGTTCATTTTCCATTTGAAAATGTTTA------------------TCAATTCCTATATATGATTAGTATT-----------GTTGTTTGTAATGTAG--TCTACTT----------ATAATCGT-----TTTCCTTGACTTTCT-GACCGACGT----------TTTTCAATTTATCTAGTTTTGATG
s cb4.chrX              8941573 254 + 21540570 tttAATTCCTGAAGCTTT----------------------CTTTTAGACTGCACCTTCGTTAGTCGCCTAGAGGAATCCCac---------------aagtttctttttt-tttcaaatttgaaacttttactttattactgcttttttatcaa-actttCGAATGACTAGAAATGTATAcatatatattttgaaaacttagtATATGTTGTTCTTAACAAAAACCCCATTGTATTATCTTAACTTTTCTGTTAAACAcgcttctttctctttttctctttctagaTTTGATG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   884981 223 -  4500979 TTTAAAACaatacttttt----------------------atttcagactGCACCATCGTTAGTCGCCTGAAAGAAATTTACTCGACATCAGTA-ttaactttaattttt-ctccaGTAAAGCAATTTACAA-TTATAATTGTTTCTCT-TCAA-TTGTTCAGTTG--------------------TATGTTTGTAACGTAGTATATGTTT----------ATAATCGTTTcttttgaattgattttttcgtccaa-------------cttttttcctctctAGTTTCAATG
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold630  5877615 201 + 20921866 TCTA--TCATgcagtttt----aattttcaat--------gtttcagaCTGCGCCATCGTTAGTCGCCTGAAAGGATATT-T-------------ATCAAATACACGTTT-CTTAATATTGGAAACTGTTTT-TAATA-------------------ACATAAATGTTTAGT--------------CTTTCTTGTAATATAG--TATGTTT----------ATAATCGTTT---TTCCCTTGACTTTCT-GACcgaca-------------ctttttctttctagtTTCGATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2160603 235 +  4147112 TTTA--GcgttcaatatttcaaaacgtacaatctcttccattttcagactgCCCCATCGTTAGTCGCTTGAAAGGACCCCGT-------------CTAGAACGCATGTTT-CTTTCCATTTGAAACTGTATC-TTGTAA-----TTTTTATCAA--TACATAAATGCCTAGC--------------TTTATTTGTAATGTAG--TATGTTC----------ATAATCGTTT---TTCCATTGACTTTTTCGtccaacaactttt-----ttcctttcttctctaGTTTCAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   51122 191 -   343467 I

a score=108220.000000
s ce10.chrX             3816359 377 + 17718866 TTTGTGTCTACAGGTGCTTATATTTTCTCCGAATAAAATTGCAC-GTTTTT--------------GGATCTACGTCAC--CGTTGTTG----AGTATTTCGTGACAATGTGGTTTGACTTGGCGGCACAATG-AAATGAATGTGGGAAT---CGGGGAGA----AAATTTTTC-----GGTGAAAGAAAACTAGTACCTCATGTTTTT-TAATACTTTTCTATTCATA-AATAACAA-----AAAAAATTTGT---------GGAGCAATTTTATTAGTCC------------ACTCTCACTTCCG---------CCCCACA--AAAACTACTTTTCCATCT-CAC--AGTTTATTTTGAAAAC--TTTTC-----------GAGTATGTGCATAAATGAGCGGGTTTGTCTGTGAAGCGCAGCGAGCAGTG-A-----------AAGACAATAGTGT---------------------CTTT---------GAAAAGTTGTACTTTT
s cb4.chrX              8941827 330 + 21540570 TTTGTGTCTACAGGTGctta---tttttccaaataaaacTGCAC-GTTTTT---------------GATCTACGTCAT---------GGGCA---ATTTAGTGAC-------TTTGACCC--------------------------------------GA----AGAATA----------GGCAAAATAGT-----------------------TTTTGCTATTCATGAAATA---------GCAAAATTACTCTGCAAGTGGTAGCAATTTTATTAGGCTACCA--------------ACTTCTGTACATTTCCCCCTCCTCCAGAGCT-------------CACTGTgtttatttttaaact--tttctagct-ttttttgaGTATGTGCATAAATGAGTGGGTCTGTCTGTGAAGCGAAACAAA---GG-A-----------AGAACAATAGACTTGTACTTTTTGCCGCCTTTACTTCT---------GAAAAC--ATACTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   885204 380 -  4500979 TTTGTGTCTACAGGTGctta---tttttccaaat-aaactGCAC-GTTTCT---------------GTTCTACGTGAC--CTTGACGGCGCAAGTATTTTGTGACAATGTGGTTTGACGC--CTGCACAATA-AGATGAATGTGAgaat--------gta----aaaatt----------gaaaaaagagctagaaactctccttttt-tgctattttcctATTCATG-AGTG---------ACAAAATTACT---------GGAGCAATTTTATTAGTACCCCGACAGACAAACTCCCACTTCCG--CACTTGCCTCCACACCAAAACTACGTT-----TTCCATcctgtttattttcaaacc--ttTCTA----------CATTATGTGCATAAATGAGGGAGTTTGTCAGTGAAGCGAAACTAGCACTG-A-----------AGAACAATAGAct---------------------cttt---------gaaaacttgtaCTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5877816 378 + 20921866 TTTGTGTCTACAGGTGCTta---tttttccgaat-aaactgcacaattttc---------------aattgacgTCAC--CTCTATTGCAAAAGTATTTTATGACAATTTGGCTTGACTC---TGCACAATA-AGAtgaatgtgagaaa--------aaa----tgagtt----------gaaaaaagaactcgacgctctttttttcgtgctatttttctattcatg-aATGG--------GTAAAATTACT---------AGAGCAATTTTATTAGTACTCCCCGCAGCTAACTTCCACTTCCG--TCCGTGCCCCCACA--AAAACTACTTT--------CAc--ggtttattttcaaacctttttttt----------gagtatgTGCATAAATGAGCAGACTTGTCTATGAAGCGAAACGAGCATTGAA-----------AGAACAATGGGAT---------------------TTCT---------GTGAGCTTGTACTTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2160838 388 +  4147112 TTTGTGTCTACAGGtgctta---tttttctgaat-aaactGCAC-GTTTCT---------------GATCTACGTCAC--CTCCATCGCAAAAGTATTTTGTGACAATGTGGTTTGACTC---TGCACAATG-AGATGAATGTGAGAAA--------ATAATGccgagtttc--------aaaaaaagaactagaAGGTCGT-------tgctatttttctattcatg-aATGGGGCAAATAGTAAAATTACT---------GGAGCAATTTTATTAGTACTCACTGCA-CTAACTTCCACTTCCG--GACGTGCCCccaca--aaactcactttcgaGTTTGCac--tgtttattttcaaacc--tttttt----------gagtATGTGCATAAATGAGTGAGTTTGTCTATGAAGCGAAACGAGCAATG-A-----------AGAACAATAGGCC---------------------CATT---------GAAAAGCtgtactttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   51313 396 -   343467 TTTGTATCT-------Cttacttttttgttgcat-aaAACTCAC-GTTTCCCTTtttattgaattgaattgacgTCACTGCTTGATTG-------------AGACAATGTGGTTGTTCCG---TGCACAACATGGgagaataaaaacaataactaGCGCA----TAAGTTTTCCGTGTAGAAGAAAGAAACGACAGTTTTATTACTTTCTATGCCACTACTACTCGGA-TACATCCGGTATCATGAAGTCCCTC--------AGAGAAAAT----------------------------actttca------------------aaa--catttttacattttcaa--tgtttattttcaaagt--tttttttctgcttttctaGCATGCACATAAATGATCAGGTTTGTCTGTGAAGCGAAACAAAAAGTA-ACAGATGGATAGAGAACAAAAGGAt---------------------ttttttccatgaaaaaGAGTCGTACTTTT
i caeJap4.Scaffold18142 I 191 I 278

a score=-33275.000000
s ce10.chrX             3816736  91 + 17718866 ---------CA-AGTTTTTC----------AAGCTTTATGGGTTGAG-----------------TAA-GTTGAGCAAGTT---------------------------GAATAGAAAACAT------------------------------AG------AGAGCTCATAGT----------TCTGTTCATAAAGTGAAA---AGTG-----------------------------
s cb4.chrX              8942157 183 + 21540570 GAACATTGAAAGGTCTCTTCCGGGGagtagaatttttcagtttcaaggTTCAGAGTTCTCGCA-TAG-----AGGAATCTCTATTTTTTGGCTGTAAACAACAAGTAGAA------------TTCTTTG------------GCcttaaaaaa------agagtttgtgtc----------cttccctattttttaaatggaaTTG-----Tcaaccacaacaacaacaaccact
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   885584 167 -  4500979 ---------CACgcattttcc---------aactttttaaagttgaaTGGCTAACTTTTCCGA-TAGGGTTCAGAGATCT----------------ACCaacatggaaaaaagagaaatt--ttatttatatgTT-GCGATGTTGTAAACAA---CCGAGGTTCTTTGGC----------CTCAGTAATTTTCTGCAT---ATTG-----TCAACAACAACA--------CAtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5878194 173 + 20921866 ---------cctactttttc----------aattctttaaAGTTGG----------ATT-----TAGGGTTCAGAGATCTAT--------------ACTGagtctagaaaaagaaaatgtccATGTTAATATGTTAGAG-TGAAGTAAACAAGATACTAGAATCTGTTTCTATTCTTTAGTCTTTCAATTGCCTTAAT---GTTGTATGAGAAATAATAACA---------AGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2161226 168 +  4147112 ---------tc-aattcttc----------aactttttaaaGTTGGG---CAGAATATTAAGAGTAGGGTTCAGAGATCT--------------------Ccctcgaaaaaagaaaaagt-----tttatgaagTAACGATGAAGTAAACAAGTTACTATAACTATAATCTATGTGCAAGTTctttga---cctgaaa---attg---gcacaacaacaaca---------agt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   51709 278 -   343467 I

a score=42926.000000
s ce10.chrX             3816827 216 + 17718866 TTTTATGTATTCAAAGTTTATTCCAATGAAATTGTAAGAAAAAAAGAAAACACGGAA---------AACCAAGTGTTGTCACAAAA-CATCACATTC---AAAAAAATGT-GCTGAATTTGGGAAATACAATTAAGACGGAGGGACAA--AAAA-------TTGTAAAAAGT--------GTGAAG---------GGACAAAGATGATGAAAAAACATTAATTGTGTGGT---------AAA-GA-------------------------AAAGTTGATTG-------------GATATTGTAG
s cb4.chrX              8942340 244 + 21540570 tattttgtattcaaattttattcca-------------aAGTCGAGTAAAAACGGAAGAAGAAAGGAA--------AGTCACAAAA-CCGCACG------GAGAAAAGGT-T------TTGTGAAATACAAttaaagaggaagaaaaaacagtttttcgaaataaaaaaaattggttcaggggggagaaaaaagaggacaaagatgatgaaaa--------atgggttgttttttgaaaaaa-aatga---------caaaggAGAATA-GGAATTGATTGGAAGAAC------GGATCTGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   885751 219 -  4500979 tgttttgtattcaaattttattcca-------------aagtaaagaaaaaacggaa---------aa--------tgtcacaaaa-catcacattc---aaaaaaatgt-ggtgaaattgtgaaatacAATTAAGACGGAccaaaaa--agtt-------gtggaaaaagt-------------atgaaaacgGGGACAAAGATGATGAAAA--------GTGTGTTACggtt-----aaa-aatga---------caaaggaGGGTAGGGAATTGATTGGAAGGGTG-----GGAATTGATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5878367 206 + 20921866 GATTTTGTATTCAAGTTTTATTCC-----------------AATAATAAAAACGCAA---------AG--------TGTCACAAATGTAGCACAtcc---agaaaaatgt-gttgCACTTATGAAATACAATTAAGACggacaaaaaa--agtt------------gaaaat--------tgtgag---------ggacaaaaatgatgaaaa-------aatgggtggg---------aaa-ggggggTTACAATTGAAGGGGATGTGAGGAATTGATGGT------------AAAGTTAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2161394 228 +  4147112 tattttgtattcaaattttattcca-------------aagaagagaaaaaacgaca---------aa--------agtCACAAAT-CAACACATCC---AAAAAGATGTGGTTGAACTTGTGAAATACAATAAAGACGgaccacaaa--aaat------------gaagtt--------ggtGAGAGGGGAGGAAGACAAAGATGATGAAAA-------TATGGGTTAC---------AAATGATGGGTT----TTTGGGGGGTGATTGGGAGTTGATTGTGGATGTGAGGAGGGAATTAGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   51987 204 -   343467 TTCTTTGTATTCAGATTTTATTCCATtgta--------agaagaaaaaaagacaaaa---------ga--TTGTTTTGCCACAAAA-CATCACATTTTCAGGTAAAATGT-GAAGTACtttgaaaatacaattaaaaataaaaataaa--atga------aatggaaaaagg--------gggcaatac------aaataaagataatgaatg-----GGATTGGGTGGA---------ACA-AGCGA----------------------TTGATTGATTGCAG--------------------
i caeJap4.Scaffold18142 I 278 I 54

a score=-9329.000000
s ce10.chrX             3817043 29 + 17718866 GG--TGCAGA-ATC----------AAATATT---------------------------TTCTTGATGGT
s cb4.chrX              8942584 34 + 21540570 ATTTTG---------ATTTGGTATAAAACTC-AGAAA-------------------------CGATCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   885970 62 -  4500979 GGTTTGCAGA-atcaaaacaatgaaaacgtc-aaaaaacaaa--acaagttgATTT---CTTTGACTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5878573 62 + 20921866 GGAGTGCAGG-ATCAAAACAAGG-AAACGTC-AAAAAACAAG--CAGgtttgattt--attttgacAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2161622 68 +  4147112 GAAGTGCAGGTATCAAAACAata-aagtgtcaaaaaaacaagttcatttttgattttatttttgactaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   52191 54 -   343467 I

a score=130135.000000
s ce10.chrX             3817072 439 + 17718866  
s cb4.chrX              8942618 411 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   886032 395 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5878635 402 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2161690 384 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   52245 400 -   343467  
i caeJap4.Scaffold18142 I 54 I 4

a score=-3372.000000
s ce10.chrX             3817511 12 + 17718866 ATTGTGGTCTTT
s cb4.chrX              8943029 10 + 21540570 GAGAAGAGAT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   886427 10 -  4500979 TCTGAGATAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2162074  7 +  4147112 TT---GATTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   52645  4 -   343467 I
e caeSp111.Scaffold630  5879037  0 + 20921866 C

a score=539109.000000
s ce10.chrX             3817523 1080 + 17718866  
s cb4.chrX              8943039 1216 + 21540570  
i cb4.chrX              C 0 I 94
s caeRem4.Crem_Contig0   886437 1189 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5879037 1163 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2162081 1186 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   52649 1197 -   343467  
i caeJap4.Scaffold18142 I 4 C 0

a score=17479.000000
s ce10.chrX             3818603 48 + 17718866 CTCTAGTTTCACAGGAATTATAGAATGCCTCTCTACTGCTATTTCCAC---
s caeRem4.Crem_Contig0   887626 43 -  4500979 CTCGGGTTTCACAAGAATTATGGATTGACCCGCTTCTTC-ATGC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5880200 48 + 20921866 CTCGAGTTTCACAAGAATTATGGATTGACTCGTTGCTTCAATGTCTTC---
i caeSp111.Scaffold630  C 0 I 41
s caePb3.Scfld02_0      2163267 48 +  4147112 CTCGGGTTTCACTAGAATTATGGATTGACCCGTTGCCTCAATGCTTTT---
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   53846 51 -   343467 CTCCGGTTTCAGAGGAATTATGGATTGCCCggtctctttctctctctctct
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8944255 94 + 21540570 I

a score=-3310.000000
s ce10.chrX             3818651 30 + 17718866 TGACATGAAACGTTTGTGAGA-----------------------CGCTCACTT
s caeRem4.Crem_Contig0   887669 51 -  4500979 TAGCTTGCAACATCGgtgagaataaga-agaaaactgactct-tcactcattt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2163320 33 +  4147112 -------------------GAATAAGAGAGAACTCTgacttt-tctctcattt
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   53897 19 -   343467 ----------------------------------ctctctctctctctctctc
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8944255 94 + 21540570 I
e caeSp111.Scaffold630  5880248 41 + 20921866 I

a score=-486.000000
s ce10.chrX             3818681 7 + 17718866 TCTGTGT
s caeRem4.Crem_Contig0   887720 1 -  4500979 ------t
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5880289 4 + 20921866 tct---T
i caeSp111.Scaffold630  I 41 I 5
s caePb3.Scfld02_0      2163353 1 +  4147112 ------t
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18142   53916 7 -   343467 tcagtct
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8944255 94 + 21540570 I

a score=384805.000000
s ce10.chrX             3818688 1449 + 17718866  
s cb4.chrX              8944349 1628 + 21540570  
i cb4.chrX              I 94 I 35
s caeRem4.Crem_Contig0   887727 1775 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5880298 1640 + 20921866  
i caeSp111.Scaffold630  I 5 I 6
s caePb3.Scfld02_0      2163366 1652 +  4147112  
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18142   53923 1719 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-4832.000000
s ce10.chrX             3820137 52 + 17718866 CAGCGAG---CAAAAAAA-----GATCTAGGTCCCAACTAAAACAGCGCTAT--GTTCTCAG
s caeRem4.Crem_Contig0   889502 47 -  4500979 ----------CAAAAAAG---TAGATCTAGGACC--ACTAACACAGCTGTAcgtcttttcat
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5881944 48 + 20921866 -GGAGAAGCACAAAAAAG---TATATCTTGGACC--------ACGGCtgttt--ctttccat
i caeSp111.Scaffold630  I 6 I 29
s caePb3.Scfld02_0      2165018 48 +  4147112 ------GGCacagaaaaaatctttatcTAGGACC------AAACAATTGCAC--TTTTTCCT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   55642 35 -   343467 -------------AGCAA---TGCGTCTTATTCC-----GAAAGAGTAGTAT--ATGC----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8945977 35 + 21540570 I

a score=311054.000000
s ce10.chrX             3820189 756 + 17718866  
s cb4.chrX              8946012 766 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   889561 788 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5882021 741 + 20921866  
i caeSp111.Scaffold630  I 29 C 0
s caePb3.Scfld02_0      2165069 750 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   55677 839 -   343467  
i caeJap4.Scaffold18142 C 0 I 19

a score=2352.000000
s ce10.chrX             3820945 24 + 17718866 TCTTCTTTTTTTACGTCTCATAGT
s cb4.chrX              8946778 17 + 21540570 t-ttct-ttttttttcctt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   890349 17 -  4500979 t-ttca-ttttttcgtttt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5882762 12 + 20921866 -------TTTTTTCGTCTC-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2165819 18 +  4147112 t-ttcttttttttcgtctt-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   56516 19 -   343467 I

a score=173233.000000
s ce10.chrX             3820969 472 + 17718866  
s cb4.chrX              8946795 472 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   890366 446 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  5882774 422 + 20921866  
i caeSp111.Scaffold630  C 0 I 44
s caePb3.Scfld02_0      2165837 464 +  4147112  
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142   56535 384 -   343467  
i caeJap4.Scaffold18142 I 19 C 0

a score=-2552.000000
s ce10.chrX             3821441 28 + 17718866 CGCGGATTCAGTGGGAAATTCCTATTTG---
s cb4.chrX              8947271 17 + 21540570 -----------gGATGAAATCTTGGTTG---
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   890821 27 -  4500979 ttcata-ttaaaaaagaaatcttgTTTG---
i caeRem4.Crem_Contig0  I 9 C 0
s caePb3.Scfld02_0      2166310 28 +  4147112 TCTACGTTTGAAGAATAAATCTCGTTTG---
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142   56919 13 -   343467 ------------------GTATTTATTGTGA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5883196 44 + 20921866 I

a score=-3416.000000
s ce10.chrX             3821469 188 + 17718866 ATC----TTTTTGCTAGTGTGGT---GAGATAATCCGCGCACACATCAGGCAAATGAAAAATA--------GAAAAGGGGACATG--------GAAAACAAA-ATAT------------------AAACGCAAACGCTTGGATG-TTTAAAGATATAAATTAGGCG------------CATTCCACATTTTTTCCCCTCCTATTTTCTCGCATGCT-TTTT--T------TGCAGCTGCTCAC-TC-------GTGTTGC---
s cb4.chrX              8947288 194 + 21540570 GTT----TGGATAATAGAGTAATATGAGGATTATCCCTACAT---GTTGgcaaatgaa-------------gaaaaatagaag-----cagagcaaaa-aat-agattaggcgagaaaaacaggaaaaagcAATC-CCAGAATGTTTTGAAGACATAAATCAGTTGT--------AATCATTTCACAAT-----------AAAA--cgtttgtttc-tttt--t------tgcagcTGCTCgt-tt-------ttttcac---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   890848 173 -  4500979 GTT----CTAATGATAGAGTGGT---AGGCTAATCCCTACAT---CCaagcaaatgaa--------------aaaagtggacGTG-TCCGGAGCAAAACAAG-AGAT------------------AAAGGCTATC-CTCGGATG-TTGAAAGATATAAATTAGGCG------------CATTCCACATTC--------CCAATT--CGAGCATGTCATTTT--T------TGCAGCTGCTC----T-------CTTTCAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5883240 175 + 20921866 atcttgTTTGATGATAGACTGGT---GGACTAATCCCTCCAT---TCCagtaaatg---------------aaaaaggggaCGTGCTTGAAAGCAAAACAAGCCGAT------------------CAAGCCTATC-CTTGGATA-TTTAGAGATATAAATTAGGCG------------CATTCCCAATTC----------------GGGGCGTGGA-TTCT--T------TGCAGCTGCTCTCGCC-------CTGTTAC---
i caeSp111.Scaffold630  I 44 C 0
s caePb3.Scfld02_0      2166338 197 +  4147112 -------ATGCTGAT--GCTGGC---GGGCTAATCCCTAGAT---TCcggtgaatgaaaaaaaaacatagaaaaaagaggacgTGCCCTCGAGCCAAACAAG-CGAT------------------AAAGGATATT-CTAGGATG-TTTAAAGATATAAATTAGATG------------CATTCCACATTC--------CCAAATAGTGGAcatgtt-tttttat------tgcagcTGCTCACACTCATGTTGCTATTAC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   56932 135 -   343467 ----------------------------------------------------------------------CAAAAACATCAAGTT-------AGAAAACAAT-CGTT----------------------TCGATT-CTAGGA-A-TTGAAAT---TGAACTAGCGGCTagtaataaaatattttttatt-----------aaattttcgtTATGCT-ATTT--TGTATGCTGCAGTTCCTCAT-CT-------CTGGTGTTTC
i caeJap4.Scaffold18142 C 0 I 102

a score=-287.000000
s ce10.chrX             3821657 1 + 17718866 C
s cb4.chrX              8947482 1 + 21540570 t
i cb4.chrX              C 0 I 96
s caeRem4.Crem_Contig0   891021 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5883415 1 + 20921866 T
i caeSp111.Scaffold630  C 0 I 35
s caePb3.Scfld02_0      2166535 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18142   57067 102 -   343467 I

a score=0.000000
s ce10.chrX             3821658 2 + 17718866 CG
e caePb3.Scfld02_0      2166536 3 +  4147112 I
e caeJap4.Scaffold18142   57067 102 -   343467 I
e cb4.chrX              8947483 96 + 21540570 I
e caeSp111.Scaffold630  5883416 35 + 20921866 I
e caeRem4.Crem_Contig0   891022 4 -  4500979 I

a score=-1447.000000
s ce10.chrX             3821660 41 + 17718866 GAATATTCTAATCTGGGAAGGAACAGAACGGGAAATACAGC---------------
s caeRem4.Crem_Contig0   891026 32 -  4500979 -----TATTACTCTCGGAAGGGACACTG----AAATCCAGC---------------
i caeRem4.Crem_Contig0  I 4 I 10
s caePb3.Scfld02_0      2166539 36 +  4147112 --------------------GAACGCTGAAATAAATCCAGTCATTTTGAGAAGGAC
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18142   57067 102 -   343467 I
e cb4.chrX              8947483 96 + 21540570 I
e caeSp111.Scaffold630  5883416 35 + 20921866 I

a score=11621.000000
s ce10.chrX             3821701 47 + 17718866 --------ACACATACACTTCCATGTTTCG--AGAAAATATTAGAGAAGGACGCCCA
s caeRem4.Crem_Contig0   891068 53 -  4500979 ACAAGGACACTCCTTCTCTGATatgaattgaaagaaaaaacc----aagGACGCCCA
i caeRem4.Crem_Contig0  I 10 I 10
s caeSp111.Scaffold630  5883451 43 + 20921866 --------ACTCCTTCTCTgatatgaattg--aaaaaaaacc----aaggACGCCCA
i caeSp111.Scaffold630  I 35 I 10
s caePb3.Scfld02_0      2166575 44 +  4147112 --------ACTCCTCTTCTgatatgaattg-aaaaaaaaacc----aaggaCGCCCA
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18142   57067 102 -   343467 I
e cb4.chrX              8947483 96 + 21540570 I

a score=6639.000000
s ce10.chrX             3821748 16 + 17718866 GTCCGCTC---------C---TATTTTT
s cb4.chrX              8947579 25 + 21540570 GTTCGCTCTAAagtgttt---ttgtttt
i cb4.chrX              I 96 C 0
s caeRem4.Crem_Contig0   891131 16 -  4500979 GTCCGctc---------c---tattttt
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5883504 16 + 20921866 GTCCGctc---------c---tattttt
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2166629 19 +  4147112 GTCCGccc---------tttattttttt
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18142   57067 102 -   343467 I

a score=200377.000000
s ce10.chrX             3821764 301 + 17718866 CAGATATGGATGGCCCC-TAGGGGTCTGTGTT---GAG--TTTTTTTTGA-GgtgtgtgtgtgtgtgtgtgtgtgtgtgCC---ACAACGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCAAAACAA----ACACACAAAAACAGATGGAAGGAAATAGGGCGAGAGCCA--GGAAAAATGAG-CCCCGGCCGCCCGG-GTCGGACTACATGGTCC--------CTGCATTCCAGATCCTGTCC-TTGCC--------TGCCAAACAGCCTCCCGACACCTCCAGCCGTTTTAGGGC-------ATCGTC-----------------CTTCATTTCCGCAC--------------------ATGA
s cb4.chrX              8947604 335 + 21540570 caaatatggATGACCCCTTGGGGGTC--TAGtggagagttttttttttgctcgtcGGGACCCCAGTGTCCATGTGTGAGCCCCACCAACGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCAAAACAA----ACAGACAAAAACAGATGGAAGGAAATAGGGTGACAGCCCCTGGAAAAATGAGACCCCGGCCGCCTGGAGTCGGACTACATGGTCCTTTCCCGAAAAC-ATCAGGATTCTGTCCTTTGTC-----CT----CGAA---------AACACCTC--------TTTGCTC-------TCCACTGTCGCAGTTTATTCCATTTTCATTTCGCCCTTTTCCTTTCACA-----Taaatga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   891147 294 -  4500979 cagatatggaTGGCCCC-TAGGGGTc--tgtt---gagttttttttttgc---------------------tgtgtGTGCC---ACAACGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCAAAACAA----ACACACAAAAACAGATGGAAGGAAATAGGGCGAGAGCCA--GGAAAAATGAG-CCCCGGCCGCCCGGGGTCGGACTACATGGTCC--CACCAACCAG-CCCCGGATCCTGTCC--TGCC-----C--------A---------AACACCTC--GCCTTTTTTGCcc-------tc-----------tttcttcca-tttcatttcGGCACTTTCCTTTTACA-TATGTAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5883520 310 + 20921866 cagatatggATGGCCCC-TAGGGGTC--TGTT---GAG---tttttttGC---------------------TGTGTGTGCC---ACAACGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCAAAACAA----ACACACAAAAACAGATGGAAGGAAATAGGGCGAGAGCCA--GGAAAAATGAG-CCCCGGCCGCCCGGGGTCGGACTACATGGTCC--------CCAT-CTCCGGATCCTGTCC-TTGCCTTCTGCCATGCCAAACAT----CCAACACCTCATGCCTTTTTGGCCG-------GCCGGC-------CGACTTTCG-CTTTATTTTGCCACTTTTCTTTTACA-TAtgtaaatga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2166648 313 +  4147112 cagatatggatGGCCCC-TAGGGGTC--Tgtt---gag---tttttttgc---------------------tgtGTGTGCC---ACAACGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCAAAacaa----acacacaaaaacaGATGGAAGGAAATAGGGCGAGAGCCA--GGAAAAATGAG-CCCCGGCCGCCCGGGGTCGGACTACATGGTCC--------CCAG-CCCCGGATCCTGTCC-GTGTC-----CTATGCCAAACAG----CCAACACCTATTGCTTTTTTAGCTGTTGCCCTTCTACC-------CAACCCTCT-CCTTGTTTTTCGACTTCTTGTCTACATTTTAGGGATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   57169 257 -   343467 cataTATGGATGGCCTC-TAGGGGTC--TGTT---GCG---TTTTTTCGT---------------------TGTGTGTGCC---ACAGCGTTTCAAATTGCTTGCCTGCGGGTGCATACATGCCTGACTGAATGCaaaacaaacacacacacaaaaacaGATGGAAGGAAATAGGGCGAAAGCCA--GGAAAAATGAG-CCCCGACCGCCGCGGGTCCGACTACATGGTCC--------CT---CTTTGGAAGCCAGAG-GTGCC----------------------CCCATACTTTTTACGGTTTT-----------------------------------TCTCGTATC------------------TTTGCAGATGA
i caeJap4.Scaffold18142 I 102 I 98

a score=-49466.000000
s ce10.chrX             3822065 122 + 17718866 CAATGCAAAGGAAAA--------------T---------------------------------------------AA---CTATGCGCTAAAACGACTTAA---------------------------ACATGCCAACTGAAACTAT--------------ATAAA--------------------------GTTTTATTAAGCT---------TCTTGGGGG---------GAAAGTCTAATAGTCTAATTATCAAAGCTGAAACAT----G
s cb4.chrX              8947939 145 + 21540570 aaattctggagCAGAAAAGGTCCAAATTTCGATGGAGCatt--------------------tttttaaccaaaaaat---tttttctttcgaac-CCCAGTCTTTG---------------------------------------------------------AAAACAAGACC----------------------TAGGAAACA---AGACGCAatttagggttactgtagt-----------cggT-----------TTACAGCTTTTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   891441 196 -  4500979 AAATTCTAGAGCAAA--------------TGTTAGGACCCT--------------------CTT-----------AT---TTTTCCCCGTAAA---CTGGACTTTGTCCCCAATaaaaagaaactagaaaagcacaagaaatagtga--------caa---acaaagaaaaacc-------gGAAC----AGGTGATAGTAAGCACTGAGACAGAATTAGGAGTAACTGGAAGAAAATGGGGTACGGT----AATAGACTGGCAGCTTTTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5883830 192 + 20921866 aaattctagaGCAAA--------------CGTTAGGTCCCTCCCCTTTCAAACTCCACTTACCg--ggaaaagaaatgaacttTGCGccaaaat-actgaa---------------------------aaattccaaaagacAGTTCGGCCGGAACAGCTGATAAAGGAAGAAG-------CGAAT------GTGTTTGAAAGTG---------GAGTGAGGTA--------TACGGTATGAAAGGCT----TTTTGAGTGATAGTTT---TA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2166961 180 +  4147112 AAATTCCAGAGCAAA--------------TACTAGgacccacc-----------------------------aaaat---tttttcacta-----attgAAATTTAGCCT------------------AAGTTCCTAGCAAC--TTC--------CAGT--ACAAAGTAACAGTTTTAGGCCAAATCAGCTGATgttaaaaaaga---------aagtttgaaagacAGGAGTACGGTATCAGAGTATAAGCTTCTGAGTGATAGTTT---AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   57426  98 -   343467 I

a score=259146.000000
s ce10.chrX             3822187 610 + 17718866  
s cb4.chrX              8948084 761 + 21540570  
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   891637 654 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5884022 557 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2167141 607 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   57524 558 -   343467  
i caeJap4.Scaffold18142 I 98 C 0

a score=-2463.000000
s ce10.chrX             3822797 33 + 17718866 ATCTAGTTTTTTTCAGAAAAA------------AGTGTATCTTAA
s caeRem4.Crem_Contig0   892292 33 -  4500979 ATCGAAATTTGTTAGGCACTACAGGAGGGTTCA------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5884579 21 + 20921866 ATCgaaatttgttgaaaatag------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2167748 21 +  4147112 ATCGAAATTTGTTAGGGATAG------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   58082 15 -   343467 ATCGAAAAGTGGAGA------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8948845 26 + 21540570 I

a score=-15577.000000
s ce10.chrX             3822830 52 + 17718866 AAGTTTCAAAAACCACTGCCACAATGACCAAATAC-----CATAGTTTAAAAAAATG
s cb4.chrX              8948871 51 + 21540570 gaaattcaaaaaatatgacgaAGG-GTCAAAAAAG-----CAAGGTTCAAGAAGAAG
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   892325 47 -  4500979 ATGGTGTAGAGAGTTCAGTCAGAA-GTTGAA---------ctcatttcaagaaaaaa
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  5884600 30 + 20921866 ------CAGGAGGGTCCAATTTCG-TTTGAA---------CTCATT-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2167769 30 +  4147112 ------CAGGAGGGTCCAATTTCT-GAAGAA---------CTCATT-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   58097 51 -   343467 ---AAGCAGGAGGGCCAGTCAAAT-GCTTAAAGGCCTagtcttttttttgaaatg--
i caeJap4.Scaffold18142 C 0 C 0

a score=-3454.000000
s ce10.chrX             3822882 17 + 17718866 TTTGCAATTTTTTTTTG
s cb4.chrX              8948922  8 + 21540570 ---------GTCTATCT
i cb4.chrX              C 0 I 16
s caeSp111.Scaffold630  5884630  3 + 20921866 --------------TCG
i caeSp111.Scaffold630  C 0 I 13
s caePb3.Scfld02_0      2167799  4 +  4147112 -------------CTTG
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18142   58148 16 -   343467 -tttgaaacGTTTCTTG
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   892372 15 -  4500979 I

a score=-26623.000000
s ce10.chrX             3822899 571 + 17718866  
s cb4.chrX              8948946 523 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   892387 527 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  5884646 486 + 20921866  
i caeSp111.Scaffold630  I 13 I 18
s caePb3.Scfld02_0      2167814 486 +  4147112  
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18142   58164 546 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-10916.000000
s ce10.chrX             3823470 32 + 17718866 AGTGAAGTAACTGAACTATTTGAAGTTCTCTC--------
s cb4.chrX              8949469 28 + 21540570 ----AAATATACATAGGTCTGGAAGAATTAAG--------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   892914 26 -  4500979 ----GACAAGGC-CAGGATTGG-AGTGTTACG--------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      2168300 16 +  4147112 ----------------AACTGGTAGACGAAAG--------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142   58710 31 -   343467 ---------ACTTTggaactgaaaaaataaaagccctttt
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5885132 18 + 20921866 I

a score=-26650.000000
s ce10.chrX             3823502 64 + 17718866 AA---AGTTGCAGCCG--GTCAGCACAAACTGCG------ATACTGTAGCAGCTGGGGGTCA-------CATTCACACAAAA----
s cb4.chrX              8949499 74 + 21540570 AGAAAACATTGGTTTGAAGAAGGTTGGAACAGTGGCTCTGACACATT--CAGCTAGACAACTG------TACTCAGACAAAA----
i cb4.chrX              I 2 I 16
s caeRem4.Crem_Contig0   892942 56 -  4500979 AG---ACATGCACCTG--GACGGTTTTCACAAAAGGGTCGA--------CAGCTGGGTTACT-------------GACAAAA----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5885150 29 + 20921866 AG---GTTGACAGCTG--GACGGTACTATGGGTA----------------------------------------------------
i caeSp111.Scaffold630  I 18 C 0
s caePb3.Scfld02_0      2168325 29 +  4147112 AG---ACATGCAGCTG--GACAGTTCTTTTGGTA----------------------------------------------------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142   58741 58 -   343467 -----------aaata--agaaataaaaacaagc---------------caGCTGCGCACCGAGACAGTCactgagagaaaaaaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-4126.000000
s ce10.chrX             3823566 20 + 17718866 CTCAGAAAACTCATGAAAAC--------------
s caeSp111.Scaffold630  5885179 20 + 20921866 CCCGGCACATGAGTTGGACG--------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2168354 13 +  4147112 CCTAG-------GTTAAACA--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   58799 24 -   343467 ----------cagtaagaAAGGACACTTGTGTCG
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8949573 16 + 21540570 I
e caeRem4.Crem_Contig0   892998  0 -  4500979 C

a score=12506.000000
s ce10.chrX             3823586 27 + 17718866 GACCCATGACATCACCTTT--AGTGCTTT
s cb4.chrX              8949589 29 + 21540570 GAAACATGACATCACTATTgctgaacttt
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   892998 22 -  4500979 -----ATGACATCAC--TCATTGTACTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5885199 28 + 20921866 AGGCGATGACATCATCGTCG-tgtacttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2168367 27 +  4147112 AAAGCATGACATCACCCTT--TGAACTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   58823 27 -   343467 GTCAGATGACATCACCGTG--TGTACTTT
i caeJap4.Scaffold18142 C 0 I 133

a score=-2189.000000
s ce10.chrX             3823613 100 + 17718866 GAGAAAAATATCGCCGAACTTTTTT--CATAAAAAG----TTGTGCCGATTTCT----ACTATTTCCCA-CTTCCCCCCGTTCCCCCA-----TGTTTCTTTA-------------ACTTTTTTGCCAA
s cb4.chrX              8949618 107 + 21540570 ca----aaaat----------tttt---ggatgaaGGACACtttttttGGAGGTAAGAATTCTGTCATG-TTTCTT----TCTCACTCGcaggcaatttttgaaaagaagcagagaaaaagtCCACGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   893020 103 -  4500979 AC----AAAATCgtggaaac-tttt---gaaaaaacaatgcCACTTCTGGTATT----GTTcccccccG-TTCTTTCATATTTCACCT-----CGTTTTTTGA--------CGAGAAAAAGTCCACGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5885227  99 + 20921866 tg---aaaattcgtagaaactttttttcgaaaaaag----ttatgcctAGTTCT----ACTATTTCCCGTTTTTCTCATGTTTCCCtt-----tgct--------------agaaaaaaattccacgGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2168394  89 +  4147112 CG----AAATTCGGGGAAACGCTTT---GGAAAAAG--------ACCTGGTTCT----ACTATTTCCCG-TTCTCTCATGTTTCCACa-----cgct--------------ggaaaaaaa-tccacgGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   58850 133 -   343467 I

a score=87710.000000
s ce10.chrX             3823713 103 + 17718866 -TCCGCGTGTGTCAAGTGAATCAGTGCGGTCTGGCAAATATTGCGACAAAACAAACACTAGATCCTTGCCATTGTCGGCC---TAT-----GTGGAACGG----TCTGAAAAAAAA
s cb4.chrX              8949725 111 + 21540570 -TCGGCGTACGTCAAGTGAATCAGTCCGATCTGGCAAATATTGCGACAAAACAAACACTAGATCCTTGCCATTGTCGGTCTGTTGCTCTTGGTGGGagtg----tctggaaaaaaa
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   893123 102 -  4500979 -TTG-----CGT-AAGTGAATCAGTGCGATCTGGCAAATATTGCGACAAAACAAACACTAGATCCTTGCCATTGTCGGCC---TGCTTTTAGTAGGagtg----tctggaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5885326 103 + 20921866 -CTG-CGTGCGTCAAGTGAATCAGTGCGATATAACAAATATTGCGCCAAAACAAACACTGGATCCCCGCCATTGTCGGTG---TGCTTTGGGTGGGAGgg----tctggaaa----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2168483  93 +  4147112 -CTG-C---------GTGAATCAGTGCGATCTGGCAAATATTGCGACAAAACAAACACTAGATCCTTGCCATTGTCAGTC---TGCTATGGGTGGGAGGG----TCTGGAA-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   58983 106 -   343467 GCTG-CGTGCGTCAAGTGAATCAGTGTGAACTAGCAAATATTGCGACAAAACAAACACTAGATCCGTGCCATTGTCGGTC---TG------GTGGGAGGGCTcctctggaaaaaaa
i caeJap4.Scaffold18142 I 133 C 0

a score=-3558.000000
s ce10.chrX             3823816 17 + 17718866 AAAAACGGTGCGCGCCG------
s caeRem4.Crem_Contig0   893225 10 -  4500979 -------ggcAGCGTCG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5885429  7 + 20921866 ----------aaaatcg------
i caeSp111.Scaffold630  C 0 I 9
s caeJap4.Scaffold18142   59089 12 -   343467 -----------aaaacgctctcG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2168576  2 +  4147112 I
e cb4.chrX              8949836 17 + 21540570 I

a score=428513.000000
s ce10.chrX             3823833 1005 + 17718866  
s cb4.chrX              8949853 1097 + 21540570  
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   893235  957 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5885445  966 + 20921866  
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2168578  960 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   59101  923 -   343467  
i caeJap4.Scaffold18142 C 0 I 42

a score=-2423.000000
s ce10.chrX             3824838 37 + 17718866 GGTCTCTCTCTCGGATGGTGCGTTGTTGGAAACAAGC
s cb4.chrX              8950950  9 + 21540570 GGta----tccag------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   894192 26 -  4500979 GGTC----TTTCGGATGGA-------GGATAACAAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5886411 33 + 20921866 GTTCTCT-TCTCGGATGGGG---GACGGATAACACTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2169538 29 +  4147112 GTCCTCT-TCTCGGATGAG-------GGATAACAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60024 42 -   343467 I

a score=9489.000000
s ce10.chrX             3824875 22 + 17718866 TAC-----------TTTTATGCAAATAATCTGG
s cb4.chrX              8950959 24 + 21540570 aaa--ttcaa-------tatGCTAATATTCTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   894218 31 -  4500979 AAC--TTCGATTAATTTTATGCAAATATTCTGg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5886444 31 + 20921866 AACGTTTCGT--AAATTTATGCAAATATTCAGG
i caeSp111.Scaffold630  C 0 I 19
s caePb3.Scfld02_0      2169567 30 +  4147112 AAC-TGTCGA--CAATTTATGCAAATATTCAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   60066 22 -   343467 -----------TACATTTATGCAAATATTCTGG
i caeJap4.Scaffold18142 I 42 C 0

a score=910.000000
s ce10.chrX             3824897 1 + 17718866 A
s cb4.chrX              8950983 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   894249 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2169597 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   60088 1 -   343467 A
i caeJap4.Scaffold18142 C 0 I 134
e caeSp111.Scaffold630  5886475 19 + 20921866 I

a score=-2196.000000
s ce10.chrX             3824898  8 + 17718866 TCTAGCTT-------
s cb4.chrX              8950984  8 + 21540570 TCTGTCTT-------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   894250  5 -  4500979 t---tttt-------
i caeRem4.Crem_Contig0  C 0 I 11
s caePb3.Scfld02_0      2169598 14 +  4147112 TCC-TTTTGCCTGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60089 134 -   343467 I
e caeSp111.Scaffold630  5886475 19 + 20921866 I

a score=-12829.000000
s ce10.chrX             3824906 67 + 17718866 AAATTGGCAATTTATTTGATACGATTTTTT---------------GAA----TATCCTCCTATTGTGA-----ACGTTC---CCATT-------TTTCAAG
s cb4.chrX              8950997 55 + 21540570 -------TAATTTGT---ATTCATAGATTT---------------TGA----GAAGCTTCCA-----------ATGTTA---GCGATT---TGTATTCAAG
i cb4.chrX              I 5 I 83
s caeRem4.Crem_Contig0   894266 80 -  4500979 aaGTTGGCAATTTGT---ATTCAACGATTT---------------AAAGTTCGAGGCTTACACACTTCTTGTTACAGTA---CTGATCTAATGCAATCATG
i caeRem4.Crem_Contig0  I 11 I 6
s caeSp111.Scaffold630  5886494 57 + 20921866 AACCTGGCAATTTGA---ATTCGATCAGTG---------------AAA----TGAACAAGCTGTGTTC-----TCTTTG---CTAAT--------------
i caeSp111.Scaffold630  I 19 C 0
s caePb3.Scfld02_0      2169612 75 +  4147112 AACTTggcaattcaa---tttcattcaattgGCAGTAGCAACATCAGA----CGGGCTACCGTAATCC-----AGTTTGGGCTTCAT--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60089 134 -   343467 I

a score=-3609.000000
s ce10.chrX             3824973 71 + 17718866 --AAGTTAGTTGCTTTGCAAGGG-----------------CAAAAAACTTAAAATTTCATTACATCATTTTTAAT--------GAGTAGAGAATTTAA-
s caeRem4.Crem_Contig0   894352 85 -  4500979 CAATCATAGTCGTGTTCAGAAGCAAACACCATCTTAACTATATGAAAC------TTCCTCTACGTCATTGTCAATTTTACT--GTGT------TTTTAT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5886551 63 + 20921866 --ACTAaagtttcttctgaaagg-----------------TCTAGAAC------TTTCTCTACATCATTTCCAGTTTCA----GTGT------TTTTC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2169687 71 +  4147112 --GCAGAAGCTGGGTTCAAGAAC-----------------CCTTGAAC--AGATTAttccgaacttttttcaaacgtcACTTTGTGT------TTTTA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60089 134 -   343467 I
e cb4.chrX              8951052 83 + 21540570 I

a score=2087.000000
s ce10.chrX             3825044 39 + 17718866 TCACAAAAAAT---ATCACGAG----ATGCAGTTCAAAAGAATA--CT
s cb4.chrX              8951135 35 + 21540570 TCACTATTATG---ATCACAAG----ATTCTGTC------AAAACTTC
i cb4.chrX              I 83 C 0
s caeRem4.Crem_Contig0   894437 40 -  4500979 TCTATATCAAATACATCACGTG----ATACAGTTCTTGAGAAAG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5886614 42 + 20921866 AAACCATTAAG---ATCACGAGATACATACAGTTCAAGAGACTA---G
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2169758 38 +  4147112 GAACCTTAAAG---ATCACAAG----ATACAGTTCAAGAGAATA---C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60089 134 -   343467 I

a score=92103.000000
s ce10.chrX             3825083 565 + 17718866  
s cb4.chrX              8951170 544 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   894477 548 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5886656 494 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2169796 508 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   60223 533 -   343467  
i caeJap4.Scaffold18142 I 134 I 18

a score=2219.000000
s ce10.chrX             3825648 39 + 17718866 -GAGAAGTGG-TAGAAATCAGAGGGGGGGGGGGGGGGGGGT
s cb4.chrX              8951714 30 + 21540570 CGAGTGGTGGTTAAGAATCAGTGTGAGAAG-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   895025 24 -  4500979 -GAGTGG----TAAAAATCAGAGCGGTAA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5887150 24 + 20921866 -GAGAAC----TAAGAATCATTCGAGTAA------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2170304 24 +  4147112 -gaGAGG----TTAGAATCAGAGGAGTAA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   60756 18 -   343467 I

a score=52960.000000
s ce10.chrX             3825687 154 + 17718866 AACAGTTTGGTTTGCCTGTCAGCCCCGTCAAGAC----------TGCAGACTGTTTGCCAAAACAAT-----GCGAATTGCGC----AACC----AACTATAAATAAACTTAGGTAGTAGGAAAA------CTCT----------CGGAAAAGAGA----T--TCTGTCGATTTGAC----ATTGCT---------TTGTGTTTGTCATGTT
s cb4.chrX              8951744 152 + 21540570 --TAAGTAAGTTTGCC-----AACCCGTCAAGAC---------------TGTATTTGCCAAAACAATGGTTGGCGGATTGCGC----AACCT---AACTATAAATAAACTT-TGGGGGTGAGAAGAAGTTTCTCA----------AGAGTATGGGAGAATT--TATTATTGAATAAC----A--------------ATGCATTTGTCATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   895049 153 -  4500979 ---CATTTCGTTTGCC-----AACCCGTCAAGAC----------TATAGTGTATTTGCCAAAACAATA---GACGGATTGCGC----AACC----ATctataaataaacat-tttggtTGGAAAA------CTCT----------TGAGTGTGGGACTTTTTATATTATAAGACAAC----ATTGTG---------TTGTATTTGtcatgtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5887174 132 + 20921866 -------CAGTTTGCC-----AACCCGTCAAGAC----------TGTATGTTGTTTGCCAAAACAAT-------GAATTGCGC----AACC----AACTATAAATACACTT----AGTATGAAAA------CTCT----------CAAGAC--------TC--TCTGTTGATATGAC----ATTGCG---------TTGTATTTGTCATGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2170328 142 +  4147112 -------CAGTTTGCC-----AACCCGTCAAGAC----------TGTATGGTATTTGCGAAAACAATGGTGAGCGAATTGCGC----AACC----AACTATAAATAAACTT----GGAC--AAAA------CTCT----------CAAGAAATGAG---TC--TATGTTGATTTGAC----ATTGCG---------TTGTATTTGTCATGTT
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18142   60774 184 -   343467 -----AACCGTTTACC-----TCCCCGTCAAGACAAAAAGACTGTACCCCCTGTTTGCCAAAACAATG---CGCGCATTGCGTCACAAACCTATAAACTATAAATAAACTT----CGCGGTAaga------ctttgttttttttgcggtGAAGAAC---CC--TAGTCTGGTCTGACGTATATTGCGCAAGACCGATTGTGTTTGTCATGCT
i caeJap4.Scaffold18142 I 18 C 0

a score=-2106.000000
s ce10.chrX             3825841 14 + 17718866 ----TTCCAAGCAATTCA-------
s cb4.chrX              8951896 14 + 21540570 ----TTTCGAGAAATGTG-------
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   895202 14 -  4500979 ----tttcaaagaatcca-------
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  5887306 14 + 20921866 ----ATTCAGGCTCACCA-------
i caeSp111.Scaffold630  C 0 I 20
s caeJap4.Scaffold18142   60958 25 -   343467 TTTCTTCTGACACAAACACAGTTTa
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2170470 35 +  4147112 I

a score=-776.000000
s ce10.chrX             3825855 7 + 17718866 ACAATAT
s cb4.chrX              8951914 5 + 21540570 --AAGGG
i cb4.chrX              I 4 I 6
s caeSp111.Scaffold630  5887340 1 + 20921866 ------T
i caeSp111.Scaffold630  I 20 I 6
s caeJap4.Scaffold18142   60983 7 -   343467 tcaaagt
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2170470 35 +  4147112 I
e caeRem4.Crem_Contig0   895216 38 -  4500979 I

a score=29.000000
s ce10.chrX             3825862 1 + 17718866 T
s caeSp111.Scaffold630  5887347 1 + 20921866 C
i caeSp111.Scaffold630  I 6 C 0
s caeJap4.Scaffold18142   60990 1 -   343467 t
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2170470 35 +  4147112 I
e cb4.chrX              8951919 6 + 21540570 I
e caeRem4.Crem_Contig0   895216 38 -  4500979 I

a score=281.000000
s ce10.chrX             3825863 51 + 17718866 CCAACTGT------------TTCTGA---------CAGAAGGAAGTATAATATATCAATATA-------TTTTTCAAAG--
s cb4.chrX              8951925 43 + 21540570 CCTTCTGA------------ATCTGACAGCGTTACCAGGAAGACA------------------------TGAATGAAGG--
i cb4.chrX              I 6 I 8
s caeRem4.Crem_Contig0   895254 34 -  4500979 CCGACTGA------------TTATGA---------CAGGAGGAAG------------------------TTCTTGAAAA--
i caeRem4.Crem_Contig0  I 38 I 49
s caeSp111.Scaffold630  5887348 34 + 20921866 CCGACTGT------------TTTTGA---------CAGCAGGAAG------------------------TCTCTCAACA--
i caeSp111.Scaffold630  C 0 I 72
s caePb3.Scfld02_0      2170505 34 +  4147112 cCAACTGA------------TTTTGA---------CAGGAGGAAG------------------------TCTCTAAAAG--
i caePb3.Scfld02_0      I 35 I 35
s caeJap4.Scaffold18142   60991 67 -   343467 -----tgaaaaagagaaaagttgGAA---------AAGAAGGGAgtatttgttttcaatttgcTGTCCTTCTCCCGGAAAT
i caeJap4.Scaffold18142 C 0 C 0

a score=-9097.000000
s ce10.chrX             3825914 28 + 17718866 ------ACCTATAAACATACTTTTC-------------GGAAGAGA-----A
s cb4.chrX              8951976 28 + 21540570 ------TCTCTAAAAAATCTCTTTG-------------AAAAGTGG-----T
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   895337 33 -  4500979 ------GCTTTCAAATGTATCCTGA-------------TAAATAGGATAAAT
i caeRem4.Crem_Contig0  I 49 C 0
s caePb3.Scfld02_0      2170574 41 +  4147112 ------gatCTCGATGATTCTCCGAAGTGAAAAACACCTAAATAGA-----A
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18142   61058 44 -   343467 GGTTATGCCTATGACAGCTCACTTTCAAGTACAACG--GAAAGGAA------
i caeJap4.Scaffold18142 C 0 I 148
e caeSp111.Scaffold630  5887382 72 + 20921866 I

a score=-1989.000000
s ce10.chrX             3825942 10 + 17718866 TGTG--TTGAAA---
s cb4.chrX              8952004 13 + 21540570 TTCGATTCTTGAT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   895370 14 -  4500979 TCCGATTTTAGATC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2170615 15 +  4147112 CCCAATTTGTGATCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61102 148 -   343467 I
e caeSp111.Scaffold630  5887382 72 + 20921866 I

a score=15171.000000
s ce10.chrX             3825952 103 + 17718866 AAGCGTGATCTATGCTCACAACAT-------CAAGAAGATATTCTTTGCTCCTAATTGTCTATTTTCAGTGCGAATGCTTTTTTCTGTTTTGTTTTCCTCGAAACTCGC-----------------C
s cb4.chrX              8952017  90 + 21540570 -------------------------GACCGAGTAGC--TTGTTCTATGCACCTAGGT---TATTTCCGGAAACcacgatgtttttt-ttttcttct------cgccTATTTTTGCTACTTCATCGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   895384 101 -  4500979 CATCTTGATCTTTGCTCACATTCTCAAACAAGTAGCAGATATTCTCAGCTCTCAGTT---TATTTCGGGTGACTACAatgttttctatttccttTT------AACCCAT-----------------C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5887454  96 + 20921866 AATTCCGATCtttgctcattttca-----gatgtctaAATATTCTCTGATCTCAATT---TATTTCCGGCCACTGAGATGTTTTCCGTTTACTTCC------AACCCAT-----------------C
i caeSp111.Scaffold630  I 72 C 0
s caePb3.Scfld02_0      2170630  96 +  4147112 AATTCTAATCTTTGCTCATATTCT-----GAATAGCGGATATTCTATGCCCTCCACT---TATTTCCGGTGACTGcgatgttttctgttttcttcc------gTCCCAT-----------------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61102 148 -   343467 I

a score=256153.000000
s ce10.chrX             3826055 404 + 17718866  
s cb4.chrX              8952107 475 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   895485 427 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5887550 434 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2170726 413 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   61250 385 -   343467  
i caeJap4.Scaffold18142 I 148 I 112

a score=-9707.000000
s ce10.chrX             3826459 40 + 17718866 G--------ATATCACGAG-------CAAATTTGTTTTGAAAC--AAACTTTC--GAAT---------
s cb4.chrX              8952582 59 + 21540570 GTGGA----AAACTGTGGAACATGAGTCAGAA----TCCGAACTAGATCCAGAA-TAAACTCTAGGAT
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   895912 58 -  4500979 G--------AAGTTGCGTGATATGATTCAGAATGTTTCAGAAT--GATCTAGAagtaatttctcattt
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5887984 56 + 20921866 GTGGACTTGAAATTGCGTGATATATATGTGTATGTTGCAGATG--AATATATCA-GAAT---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171139 50 +  4147112 GTGGAACTGAAATTGCGTG------TTGGAAGAGTTGCAAAAG--AATATTTGA-GAAT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61635 112 -   343467 I

a score=-5665.000000
s ce10.chrX             3826499 22 + 17718866 ------GATTC----ATCACTTGATACTTGCA---
s caeRem4.Crem_Contig0   895976 35 -  4500979 gaaaaacgttttgagaGAAGAGAATATTCCTAGGA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5888040 24 + 20921866 ------CATtc----agaatacatttttcattag-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171189 17 +  4147112 ------GATTC----AA-------CTTTCAGCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61635 112 -   343467 I
e cb4.chrX              8952641 28 + 21540570 I

a score=-6863.000000
s ce10.chrX             3826521  68 + 17718866 ACTCAAAGA-------------------------GCTCATAAAAAG---------------GAATGC--------GTATAATTT---CAA-------GGAAAATTCACCGCAC--CGATGCTTCTCGA
s cb4.chrX              8952669  59 + 21540570 ----------------------------------ACTCATTATAAG--------T------CGttaa-----------atagct---gaa-------aatgagttcAAAACACAGAAATGCTTTTTGa
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   896011  62 -  4500979 ----------------------------ACCTGAGCTCATTGGAAA---------------AGCGAg-----------acgtct---gaa-------aatgagttcaaAACAC--AATTGCTTCTTga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5888064 105 + 20921866 CCTCAGAAAAAAGCACGAGCTATCTGctaaattggttttttgaaca--------tctC---AGCTCT-------TGTTCCGGTT---AAATAAGACAAATGAGTTCAAAACAC--AAATgctttttga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171206 111 +  4147112 ACTCAAgga---------------tccaaaatttttcctttcagAAAGGGATACTctcgttagttttttttcgctgtttcagcTTCGAGAAGAACCCATTGAGTTCAAAACAC--AGCTGCTTTTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61635 112 -   343467 I

a score=-7290.000000
s ce10.chrX             3826589 150 + 17718866 CTTTTCTGCG------------------GTGTTTTGAA-G--TGTGCGATC-----AAAAAGCTAATTGCTT----GGCACATTGAG----CAACGCGCAATTTCCTTGTTACCACGCTTTGCCAGCCATCATTTACCCATTCATTCCCA-----CAATGATGTCACAATC--ATGAATAAAAAGCGTTCA
s cb4.chrX              8952728 108 + 21540570 ccttatttttcttct-------------aagTGGCAGA-G--ACTGCGATC-----AAAAAACTAATTACTTCAGCAAAACATCTTC----AGGAGCACAATTTGCT---------------CTAG-----ATTAGTTCTT--------------CCATGATGtcag------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   896073 136 -  4500979 ccttcattttcttctcctttttcttaaGATGTTTTGAT-G--GATGTGATC-----AAACAACTAATTGCTT--------CATTCCC----CCCTGCACAATTTCCTT-------------GTTAGCC--CATCAACTCCC--------------ATATGATGTcacaaat--ggaaaaatgt----tcca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5888169 135 + 20921866 tcttttcagC------------------ATGTTTTGAT-G--ACTGCggtc-----aaaaaactaattgcTT--------CATTCAAAGAGCTAACCTCAATTTCCGC----------TGCTTTAACA--CACTACCTATTCTGTTTCCAACACATTATGATGTCACAACT--AGAAACAAAT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171317 142 +  4147112 CCTTCCTCAG------------------ATGTTTTGATGG--AATGCGATC-----GAAAAACTAATTGCTT--------CATTTA-----CTAAACACAATTTCCTCGTC-CCTCCATTCTCCAACG--CTTTACCCGATTTCCCTATTCCAGTCCATGATGTCACAattgcaaaaacaaaa--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   61747 131 -   343467 ctttcttaag------------------ATGTTTTGAT-GCTGTTGCAAGCAAGGAAAAGAGCTAATTGGTT------TCCATTGAc------aagcaaaaatttttttttgacacaaTT--CTAATT--CTTTTGCTCCC--------------AAATGATGTCACAAAA--ACACGCgca---------
i caeJap4.Scaffold18142 I 112 I 16

a score=595.000000
s ce10.chrX             3826739 9 + 17718866 GTGATTTTG
s caeRem4.Crem_Contig0   896209 7 -  4500979 --gattttg
i caeRem4.Crem_Contig0  C 0 I 68
e caePb3.Scfld02_0      2171459 0 +  4147112 C
e caeJap4.Scaffold18142   61878 16 -   343467 I
e cb4.chrX              8952836 0 + 21540570 C
e caeSp111.Scaffold630  5888304 0 + 20921866 C

a score=-2331.000000
s ce10.chrX             3826748 35 + 17718866 -GAAATAGGAAACATAAAATAGGTGTGATTGCATGC
s cb4.chrX              8952836 10 + 21540570 -gaaaaagaaa-------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5888304 11 + 20921866 CCTGATAGTAG-------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171459 11 +  4147112 caaaacaagaa-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   61878 16 -   343467 I
e caeRem4.Crem_Contig0   896216 68 -  4500979 I

a score=-15824.000000
s ce10.chrX             3826783 55 + 17718866 CAGAGACATTTACTAAAAAATTAAAAAAAAAAACCTTCAGACAAGTG------------TCTTACCG
s cb4.chrX              8952846 28 + 21540570 --------------aagaaaaacagtaaaataaaGCCCACCT-------------------------
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold630  5888315 51 + 20921866 --------------CAAAAGCAAAGAAAACTAGAATTCAGATGGTTTTG-AGCATCTATTCCTACC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171470 44 +  4147112 --------------cacAGTTTCAGCAACATA-----CAAATAATCCTGAAGGATC---CCTTACC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   61894 34 -   343467 ----------cacacacacgtaCTGACTGATACATTCTATACCT-----------------------
i caeJap4.Scaffold18142 I 16 C 0
e caeRem4.Crem_Contig0   896216 68 -  4500979 I

a score=75215.000000
s ce10.chrX             3826838 775 + 17718866  
s cb4.chrX              8952881 705 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   896284 786 -  4500979  
i caeRem4.Crem_Contig0  I 68 C 0
s caeSp111.Scaffold630  5888366 726 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2171514 750 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   61928 705 -   343467  
i caeJap4.Scaffold18142 C 0 I 767

a score=24522.000000
s ce10.chrX             3827613 317 + 17718866 --TGC------GGAGCAAAAAGTGTCA-GAAAA---CG-AAAAGTTATTTTTGAAT--------------AGAGAG----------------------------------------------TTTCAGATCTAAGTT---C-CAAACTCAAAAATTCAATAAAACATTAGATTTGTGGCATGGTGATTTATGCTAT-TGCCAGACTTCC--AATACAAACCTAATTAAACTCT-------------CACTCTCAAACCAC-AAAACTTAACAAGTAGATTATCTATTAGATTAAGCTGAAACTAATAA--GAATATTTTTGAAGATCATATGATGGCTTCCGT-ATGAAAACGTTGCACACATACATAAATATATATGAAAAATAGCTGCTAATCT---G-----GGGATAGCAAAATTTTT------
s cb4.chrX              8953586 307 + 21540570 --GATAGGATAGTCGTTAAAAGTGTCA-GAAAACCGCG-AAATGTTATTTTCACGA----AGTATCTTTTGAGAAC-----------------------------------------------TTCCTATTTGGgtgttga-aaaaatcagaaa---actt----cCC--------------GTGATTTCTGTTGTAACCTAGGCTTCC-------AAACTTAA-TAATCCCTAAAAC--ACAAACTCCGCCCAAATAATAACAAGTGA--AATCAGATTATCTATAGG--------AAAAATAATAT--GAGTGTTTTTGAAGATCAGAATATGGCTTCTTC------CATGTTGCAAATAT----------------AGAATGGGCGTTGATTTGGAGGGAGCGTGAAGTATGAATTGTACGCCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   897070 361 -  4500979 --AGC------GTCGttaaaagtgtca-aaaaa---cg-aAACGTTATTTTCGAAAGTCTAAAATCTAGCAAAAACGGATTGTT-GTTCT------AGTTTGTT-----TCggctttttctctttcttcctcGATCTATGc-gagaatcaaaaattgaatt----gccAGAACCA-ACATTGGTGATTTATGGCATAACCTAGACTTTCAGCAGGTAAACCtaa-taaactcaaaaattatttggcTCCGCCCTGAACAT-TCAGCACA--AAACATATTAGCTAT-----------GCAGGTATTAG--AACCTTTTTTGAAGATCATAAAATGGCCTCTTTGAAAAACATGTTGCCTATAT----------------AGAATAGGTGCTAATTT---AGGACtgcaaaaattctatttttctgtct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5889092 344 + 20921866 --AGA------GTCGTtaaaagtgtca-aaaaac--cg-aaatgtTATTTTAGATTGTCCAAAATTGAAGCAAGAAGTGCTGTGAGCTCTAAGATcagt----------ttgatttttccaacttttcatTCGATCTATGC-AAAAATCAGTAATTGAATA----ATCAGAACTG-AATTTCGTGATTTATGGCATAAGACAGACTTTTCCCTTCCGTGCCTAA-TAAACTTA-------ATCAgttatgatgaaaaaaa-gcgaCATA--AAACAGATTATCTCAGAA--------AAACAT-------acatgtttttgaagattattCTACGGCTTCCGTTACAAAAATGTTGCAAATAT----------------AGAATGGTTGCTAATTT---G-----ATGAAATGGATGTTGTT------
i caeSp111.Scaffold630  C 0 I 71
s caePb3.Scfld02_0      2172264 353 +  4147112 AAAGA------GTCGTTAAAAGTgtcagaaaaac--cgaaaatgttattttcgaATGCCTAAAATTGAGCACAGAATTGCTGT--GCTCTAAGATCAGTTCGTTTAGACttgtttcttcc--tttttgGCTCGATCTAtgcgaaaaatcagaaattgaata----atCGGAACT--AACAGGGTGATTTATGGGAAGTTCTAGACTAGG------TAAACCGGA-TAAACTCA-------ATCAGTTCCGCTCAAAACAA-GCAACACA--AACCAGATTATCCTGGAG--------AAACctaatagaaaaatgtttttgaagatcatTCAATGGCTTCCGCTACAGAAGTGTTGCGAATAT----------------AGAAAGAAAGCTAATTT---A-------GAGAGCAACAATTTC------
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold18142   62633 767 -   343467 I

a score=1696.000000
s ce10.chrX             3827930 9 + 17718866 TCAATAAAC
s cb4.chrX              8953893 8 + 21540570 TCAAAAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   897431 9 -  4500979 tCAAAGAAC
i caeRem4.Crem_Contig0  C 0 I 62
s caePb3.Scfld02_0      2172632 9 +  4147112 tcaaaGAAC
i caePb3.Scfld02_0      I 15 I 11
e caeJap4.Scaffold18142   62633 767 -   343467 I
e caeSp111.Scaffold630  5889436 71 + 20921866 I

a score=-4322.000000
s ce10.chrX             3827939 63 + 17718866 -----------GATCAAATGCCTAAAT-----GTCTGT-GTGTTATTCGC---ATAATTCG---CTATTAATTCAAA---------CTTCATGTT-----
s cb4.chrX              8953901 77 + 21540570 AACCCGTACCTGGACA-------AAACATTTGGTCTGTCAAGCCTTTGAA---GTAATTCAAATCTCtactttttaa---------tttctttttt----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2172652 87 +  4147112 -----------GAACAGACGTTTAATTATTGCATCTGTCGCAGTTCTAGACTTGTAATT--AGCCTGAACACTCAAAAATACCacgtttcatttcaaaac
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I
e caeSp111.Scaffold630  5889436 71 + 20921866 I
e caeRem4.Crem_Contig0   897440 62 -  4500979 I

a score=-4410.000000
s ce10.chrX             3828002 19 + 17718866 GTGAA------------CAAATTTCAAGTGT-----
s cb4.chrX              8953978 19 + 21540570 -----------------gagatcaaaactacaaaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5889507 31 + 20921866 GTTACcacatttcaattcaaaacatgacttt-----
i caeSp111.Scaffold630  I 71 C 0
s caePb3.Scfld02_0      2172739 12 +  4147112 atgac-------------------tgacttt-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I
e caeRem4.Crem_Contig0   897440 62 -  4500979 I

a score=80983.000000
s ce10.chrX             3828021 394 + 17718866  
s cb4.chrX              8953997 432 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   897502 407 -  4500979  
i caeRem4.Crem_Contig0  I 62 I 23
s caeSp111.Scaffold630  5889538 395 + 20921866  
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2172751 386 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18142   62633 767 -   343467 I

a score=-585.000000
s ce10.chrX             3828415 35 + 17718866 ACATTTGAAATGAATCTATCACTTTTCTAGCTTTT
s caeSp111.Scaffold630  5889939 21 + 20921866 ACGGTAGAGTGggaactagaa--------------
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2173143 25 +  4147112 ACGGTATAGGGAAATCTATAAACTT----------
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I
e cb4.chrX              8954429  7 + 21540570 I
e caeRem4.Crem_Contig0   897909 23 -  4500979 I

a score=-38849.000000
s ce10.chrX             3828450 216 + 17718866 TG-GCATAACGTTGGGTCTATCTGTTTTTGGATTTTGTCTCATTTTGTTCTATTAGACGAAAATCTAGAAAAAATTACAGGAAGTATAATTACACCTGATTGA---AAAATGCAAAACAGCCTAGATTAAGGCGGAACCTATTATTAATTCATTTGGTGTCCCGCCTCTTTAGGGGTTGCTTTTTACGGTTACAATATGTGTATGGAAAATGTCAAAAAG------
s cb4.chrX              8954436  83 + 21540570 TATGCGTTACGGTAGATGGGGC------------------------AGCATACtagaaacaaa-------------attgaaatttcagtt--------ttgaattGCTAtcctaaaaa----------------------------------------------ctcaaaaaa----------------------------------------------------
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   897932  79 -  4500979 TA-GTATtacggtagatcaa--------------------------atcctACTAAACCTAA------------------CAACCACAATT--------TTGG---GAAATACAAAATG----------------------------------------------TTGGCAATA-----------------acaatgt----------------------------
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold630  5889960  29 + 20921866 ---------------------------------------------------------------------------------aaaagaaact--------ttga---gATGCGATaaaca---------------------------------------------------------------------------------------------------ag------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2173168  54 +  4147112 -----------------------------------------------TCCCATCACAATAAA------------------CAAGAAGGAGT--------TTGG---GA------AAACA----------------------------------------------TTGTTTTGG--------------------------------------------AGTTTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I

a score=-10717.000000
s ce10.chrX             3828666 103 + 17718866 CAGAAACAGTTGATAATAGGCTTCGCCTATTTCTTGGTTCTTTTTTGGGAGTTCTATTTAATCTTCTTGTAACAGGCGATTCCTTTGCAACATTTACATTGGT-
s caeRem4.Crem_Contig0   898011  30 -  4500979 ------------------------------------tttctgtttt-------------------------------gtctTTTGTGCAAC-------TTTGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5889989  49 + 20921866 aagaaac----------aga--------------aatatcATTGTTTTGA---------------------------GCTTTCCTCTCGACG---AAATTTGG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2173222  64 +  4147112 AAGAAACTTTTTGTGCTAGATCCCACC-----CCAAAGTCattctt-------------------------------ggtttttggaaaaca---aaattcgg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I
e cb4.chrX              8954519   0 + 21540570 C

a score=-15968.000000
s ce10.chrX             3828769 60 + 17718866 CTCCACAACAATTCATCATTCTCCCCATCTCT-GTGAAAAAC----AAGAAT-GCAAAGCAAT--GTC
s cb4.chrX              8954519 32 + 21540570 ---------------------------------ttccaaaacggggaaaa---gagaaatagaaTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   898041 55 -  4500979 ----CCTACCAG----AAAGTCATTGTTGtccattcaaaaac----aaaagttggGAAGTGGGA-GCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5890038 59 + 20921866 --CTCCCACCACCCCTGATTTCACTTGTGTTg-accaaaaac----aaaactcgAAAAGCAGC--GTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2173286 42 +  4147112 --a-------------aaatgcattggcatgg-aaagtgaga----aaaaatagagaaatgg------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   62633 767 -   343467 I

a score=225777.000000
s ce10.chrX             3828829 703 + 17718866  
s cb4.chrX              8954551 655 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   898096 659 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5890097 666 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2173328 618 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   63400 610 -   343467  
i caeJap4.Scaffold18142 I 767 I 1421

a score=-220.000000
s ce10.chrX             3829532 27 + 17718866 GGGTCGGCA-TTGA---------------AAGCACAAAACAAC------------
s cb4.chrX              8955206 28 + 21540570 CTTGGGGgcattgaattgaaaa---------------aaaagc------------
i cb4.chrX              C 0 I 1165
s caeRem4.Crem_Contig0   898755 37 -  4500979 GGGTCGGgcattgaattgaaaaa------acataCACAAAAGC------------
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5890763 49 + 20921866 GGGTCGGGc-atgaattgagaaaaa----acatacaCAAAAGCTTC-AAAACAGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2173946 54 +  4147112 GGGTCGgct-ttgaattgaaaaaaataacacgCACACAAAAGCACCAAAAACAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I

a score=7328.000000
s ce10.chrX             3829559 28 + 17718866 TCGTACTATGTGGG--ACACTTTTTTTTTG
s caeRem4.Crem_Contig0   898803 28 -  4500979 TCGTACTATGTGGGACACAATGTCTTTA--
i caeRem4.Crem_Contig0  I 11 I 53
s caeSp111.Scaffold630  5890812 28 + 20921866 TCGTACTATGTGGA--ACAATGCTTCGCtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2174000 28 +  4147112 TCGTACTATGTGGA--ACAATGCtttcctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=-1197.000000
s ce10.chrX             3829587 36 + 17718866 TTGTAGCAGTAGTAGGGAAATTGTTT----TGATTGTTTT
s caeSp111.Scaffold630  5890840 20 + 20921866 ccgt----------------ttttcg----aaaacgttTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2174028 23 +  4147112 ccgt----------------tttttttttcaaaacgttt-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I
e caeRem4.Crem_Contig0   898831 53 -  4500979 I

a score=5034.000000
s ce10.chrX             3829623 24 + 17718866 CGTTTTTAAAA--GTTCAAAAAACAC
s caeRem4.Crem_Contig0   898884 24 -  4500979 --CATTATGAAGTGCTCAGAGAACAT
i caeRem4.Crem_Contig0  I 53 C 0
s caeSp111.Scaffold630  5890860 23 + 20921866 -GCGTCTAGAA--GCTCAAAAAACAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2174051 22 +  4147112 --cgtctagaa--gctcaaaaaacat
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=-26.000000
s ce10.chrX             3829647 12 + 17718866 ----------ATCATCACTGTT
s caeRem4.Crem_Contig0   898908 12 -  4500979 ----------TGCAATGCGGTT
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  5890883 22 + 20921866 TCCATATTACTGTAgcattgtt
i caeSp111.Scaffold630  C 0 I 6
e caePb3.Scfld02_0      2174073 21 +  4147112 I
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=35525.000000
s ce10.chrX             3829659 512 + 17718866  
s caeRem4.Crem_Contig0   898928 509 -  4500979  
i caeRem4.Crem_Contig0  I 8 I 16
s caeSp111.Scaffold630  5890911 526 + 20921866  
i caeSp111.Scaffold630  I 6 I 11
s caePb3.Scfld02_0      2174094 486 +  4147112  
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=0.000000
s ce10.chrX             3830171 25 + 17718866 TTGAGTTTTTTTTAGTTGATCGAGT
e caePb3.Scfld02_0      2174580  0 +  4147112 C
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I
e caeSp111.Scaffold630  5891437 11 + 20921866 I
e caeRem4.Crem_Contig0   899437 16 -  4500979 I

a score=-9031.000000
s ce10.chrX             3830196 44 + 17718866 CTAAAAAAATCAATTG---TGAAATCTGGGATCTAACACGAAACTAC----------------------
s caeRem4.Crem_Contig0   899453 52 -  4500979 CTATAGACCCCAATATTTGTAAAATC---GAACTATCAAACTAGTTCgagattcg--------------
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold630  5891448 63 + 20921866 CAGAAAGAACaaatac---tgaaaat---gttCTAAAATACCAATTTTAGAGACcgaagacaaaaaaat
i caeSp111.Scaffold630  I 11 I 35
s caePb3.Scfld02_0      2174580 24 +  4147112 --------------------GAAACT-------------------------CACctgggaaaaagaaag
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=-2496.000000
s ce10.chrX             3830240 37 + 17718866 AGTAATCAGGCTTCTCAAAATTAAAAAAAAA--------AGAAAA
s caeRem4.Crem_Contig0   899505 44 -  4500979 aaaaatgaatctctcaaaaatctagaaaagaaACTCTACAGTAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2174607 11 +  4147112 --------------------CGTagtgaaaa--------------
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I
e caeSp111.Scaffold630  5891511 35 + 20921866 I

a score=-6128.000000
s ce10.chrX             3830277 27 + 17718866 ---------------------GAAATATCACTATCACATATGAATTTT-------
s caeRem4.Crem_Contig0   899549 50 -  4500979 GAAACATTATCAGCAAAAAAGATGATATTTC-----CAAACGAACACGtcttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5891546 17 + 20921866 --------------------gaaaactt-----------gcgaacact-------
i caeSp111.Scaffold630  I 35 C 0
s caePb3.Scfld02_0      2174618 22 +  4147112 ---------------------aaggtttctt-----cTAATGAACTAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I
e cb4.chrX              8955234 1165 + 21540570 I

a score=22036.000000
s ce10.chrX             3830304 181 + 17718866 ------TGCTTT-------TCTACTGTTGCTTTTATATTGGATTA----GTATTCCCTTTGGA-----ATCTGCATCTGCTTAATCCTAGACAGATTAGGCCACGC--ATTCTCACGGTCTGTTCGTCTTAAAGTTCACCAGA---TTAGCGAACACCTTCACG--TTGCTAATCAAAGATTTGAA------------TGCTGAAAA----------------------------------------------TATAGCTCTCTCAAA
s cb4.chrX              8956399 196 + 21540570 ------TGCTCT-------TCTG------TTTTTATATCAGATTATCTGAGGAATCCCCCAAACAATTCTGCACACCGTCTTAATCCTAGACAGATTACAC-GAAACGAATGTCATGGTCTGTTCGTCTTGAAGTTCACTTG----CAAACGAACACCGAAATATCAAAAGAGCTAGAAATTTTGACATCAAATTtcacgaagaaaa------------------------------------------------aaaatttgttcaa
i cb4.chrX              I 1165 C 0
s caeRem4.Crem_Contig0   899599 228 -  4500979 agatgtttcgTT-------ATTG------CTTTTATATTGGATTAAGTGGGAATCCCCTCTGA-----CTTTGCATCATCTTAATCTCAGACAGATTACG--ACAACGTATATCATGGTCTGTTCGTTTTAAAGTTCACAAGA---CTTGCGAACACCAAg-----aagaaagtttcagaatcgaAGATTCAACGATtcgaagaaaacaaaattcaattgtGCAATTGGATCACACTTGCT------------GGAAAAtttgttctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5891563 214 + 20921866 -----ttccattttcagcatTTCTGTTCCTTTTTATATTGGATTATTGCTGAATCCCCAAGGA-----ATTGGAACCGTCTTAATCCTAGACAGATTATTCAACGTCAATCATCA--GTCTGTTCGTTTGAAAGTTCATCTGG---CTAACGAACAccaaaa----agaacagaaaaagaatcagagATT--------CATGGGAAA---------------------------GCTTTCTAGGAATGtttttgctactttcgacagc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2174640 197 +  4147112 -----GTTCGTT-------TTTGCGTTCTCTTTTATATTGGATTAAATGGGAATCCCTTAAGA-----CGCTGCAACGTCTTAATCCTAGAcagattattcaaaaaagtttatcatTGTCTGTTCGTTTGAAAGTTCACGAAGAAATTTGCGAACACCTCAA----AAACATGTCAAGAAATCAAA------------TGTAAGAAG---------------------------GAtttcta-----------gaaatgtttttcaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   64010 1421 -   343467 I

a score=24935.000000
s ce10.chrX             3830485 347 + 17718866 T-----------------------------------TC--T----TGTAATC---------AGAAAGTTTGATAACAAACAAG--A-----CTACACGTTT-CTGTGGTGTAA---TACTAC---GTTTCTTGTCTCTTGCAAA------------ATGACGGGGTCCC--GAGGGCGGTCGTTCCATGCAGGCGAACAA----AACGC--------------CTAGCTGATAAAGACTGAT-------GTTT--TCTGACAGCTAAAACTATATGTTGCGAATCTGTTCTCGAATC---------------TACTCGATTTCTCAAAAACAAG-CAA-GAAATAGCGG-AGAG-----TATTACACAATCATCGCCGGAAATCCTACGAATG-CTGAGT----------CG-----CCGG-ACCAATTGCAAAAAAAAAGATTCAG--GAAAAAAGACAAAAACA--------------AGTTGATAAAAGATATGTGATTTCTAAA-
s cb4.chrX              8956595 309 + 21540570 t--------------CTTTTTCGATCTCCTATCTCTTT--T----TGCTGCTTT-------TAATTATCCCGAAACAAAcagcgaa-----ttt----ttg-aaacagtgtaATACTACTAC---GACTCGTG-GTGTTGCagattggggggggggg----ggggtccc--gGAGGCGGTCGTTCCATGCATGCGAACAAAAAGAAAGG--ATGGGGACC------ACTGATAAAGATTGATGATATCGGATA--TCCGACAACTTTAACTATGTG--ATCaaggaat-----------------------------------tgaaaaacaaa--aa--------gag-agaa-----tag-----------CATCGAGTTCCT-------------AT-C----TGTTCG-----TTGG-ACCTAc--cagaa------------------------aactaaaa-----------acaaatgtgaaaa------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   899827 377 -  4500979 t--------------cttctttttccaattatcttttctat----ttttctctt-------ggagttctCGGGAACAAACAAC--A-----TTTCACGTaa-aaaaaGTGTAA---TACTAC---GTTTC----TTGTTGCAGA------------A----AGGGACCC--GAGGGCGGTCGTTCCAGAGATATGAACAA----AACCT--CTGAGGTCC--TCCGACTGATAAAGATTGAT-------GATA--TCTGACAGCTGTAACTATATGTTTTCAATCTATTCT-AGATT---------------CActcgatttctcaaaaacaaa--aaagaaataggat-GGAG-----TAGT--GTGAT--TCACCGGATGTCTTACGAGTG-TTGGAT-CAAGATGTTCG-----ATGA-ACCAAT--AAAAAAT----CAGCAG--GAGAAGATATAATTACAATGTA-----TCACAACTGATAAGat----ctgatttttaaa-
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold630  5891777 390 + 20921866 t--------------ttttctttttcaattatcttttc--t----ttctattcttcCCCGTGGAAATCTTTGGAACAAACAAC--A-----CTTTACGTTT---AAAGTGTAA---TACTAC---GTTTCGT--TTGTTGCAGA------------A----ACGGACCCC-GAGGGCGGTCGTTCCATGCGTACGAACAA----TATCT--AAAGGAGTCGATCCGACTGATAAAGATTGAT-------GATAGGGCGGGCGACTAAACCTATATGTTTTCAATCTGTTCT-GAATC---------------AGCcagatttctcaaaaacaag--aa-gaaatagcAA-GGAA-----TAGT--GTAAT--TCACCGGATATCTGACGAATG-TCGGAT-CTATCTGTTCG-----TTGG-acgttt--gaaaaaa----ccccag--aaaaaaagagagcgaCACAATGC---ATTGCAAATGATAAGAT--ATTTGATTTCTAAA-
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2174837 421 +  4147112 tacattcaacatctttttcttttttcaattatcttttt--ttttgttctattctCCTCC--TGGAATCCTGGAAACAAACAAC--A----TTTTTACGTTT--AAAAGTGTAA---TACTACTATGTTTCTC--GTGTTGCAGA------------A----ACGGACCTCAGGGGGCGGTCGTTCCATGCACACGAACAA----AACCTAGAGAGGACCCTCTCGGGTTGATAAAGATTGAT-------GATA--CCCGACAGCTAAA-CTATATGTTTTCAATCTGTTCT-GGACC---------------AATTGAATCGCTCAAAAACAATGCAA-GAAATAGCAACGAAA-----AAGT--GTAAT--TCACCGGATATCTCACGAATG-TTGTATCCTATCTGTTCG-----TTGGtccaatc--gaaaaaaaaatcatcaa--aaaacagaaggTGGAATCTGTGC----TCACAACTGTTTGGACggatgtgatttttgaa-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142   65431 365 -   343467 ------------------------------------TC--T----TTAGAAT---------CGTACGTCTTGAAACAAACAAC--AATTTCCTTTACGTTTTTTCCAGTGTAA---TACTAC---GTTTT----GAGTTGCCGA---------GCGA----TCGGACCC--GAGGGCGGCCGTTC-------------------TCTCG-----------------GCTGATAAAGATTGAT-------GATA--TCTATCAGCTAAAACTATGTGTTGCAAGTCAGTTCG-GGAACAGAAAAGgctgcagaaaaaaaattgcgaaaacacAAA--GA-AAAGAGGCTA-TGAATCGCTTAGT--GTAACTCTCTTTGTAATTCTTGCGAATGCTTGGGT-ATATCTATTCGGACCACtag-aatcac--aaaaaaaagagagatagctgataaaaaataacgaagaaacatgaaaacacgagagattaaaa----------tttcaat
i caeJap4.Scaffold18142 I 1421 C 0

a score=-1507.000000
s ce10.chrX             3830832 33 + 17718866 CGAATAGAGAGCAGAAAAAAAGTGTCTGCTCCG
s cb4.chrX              8956904 32 + 21540570 tgaatccaaatttctgaaagaaagt-tGCTCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5892170 33 + 20921866 CGAGGATGAATAGGAAAGACAAAGTCTGTTATG
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2175261 25 +  4147112 cG--------TGATGAAGAGAATGTCTGCTAAG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142   65796 19 -   343467 ---------ttctaaAAGAAAGGGTCTG-----
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   900204 29 -  4500979 I

a score=35527.000000
s ce10.chrX             3830865 229 + 17718866 AGTTCTGCTCAAAA-------CGAGCAG-----AGGTCAAATATGATGTTTCAG-AAAATTGGA-AAAAAACAGAAAATATAGAAAATACATAGAACTTAGAACCACCTGCTTAATAATAGTTTCCGTTTGTTATTGAGAAACCGGAGAACAGAAACCTACGTG-------------AAACTGA--GTC-----AA----AGTAAACATGTTTTCAACCAGTTTGCTTTTGTTGTTA-------------GCCTAAGATCAGGTTAAATGTTTCGATAAC-
s cb4.chrX              8956936 228 + 21540570 CATCTAGAACCTGAA----ATGGAGCAG-----AGGTCGGATATGATGTTTGGgcaaaattatggaaaaaatatg-----------------------tcaaaacaCCTGTTCTATTATAGTTTCCATTTGTTTTTC--ATGACAACA-----TGACCTACGCGGAAAATAATGTAAAAACCAC--CTC-----AATCACAACAAACATGTtggaaaaaac-----atttaatttaATAATTCAGGGAGTGCCTAAGATCA-TCAAAATGTTCCAGTGAc-
i cb4.chrX              C 0 I 81
s caeRem4.Crem_Contig0   900233 183 -  4500979 AATTCTGTTCTTAA-------GGAGCAG-----AGGTCAGAACTGATGTTTGacttaaatt----aaaaaatttt-----------------------------cacctGCACCATAATAGTTTCCGTTTGTTATTCAGATGACaaaaaaaTCTCACCTACGTG-------------AAACAAA--CTC-----CG----AGtaaacatgtt---------------tttgttgttA-------------GCCTAAGATCAGGTTAAATGTTgcgataac-
i caeRem4.Crem_Contig0  I 29 I 2
s caeSp111.Scaffold630  5892203 186 + 20921866 -------------------AAGGAGCAG-----AGGTCGAAACTGATGTTTGactaaaattat--gaaaaataaa-----------------------taatttcacCTGCCGATTATAAGTTCCCGTTTGTTGTTC--ATAAC---------AAACCTACGTG-------------AAGCCAAAATTC---GAAA----GGTAAACATGTTTTTGAGCATTCC-AATTTGTTATTA-------------GCCTAAGATCAGGTTAACTCAGCCGATAAC-
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2175286 191 +  4147112 -------------------TAGGAGCAG-----AGGTCAGATATGATGTTTGActggaattgga-gaaaaacaat-----------------------tagttTCACCTGTCGATTAATAGTTTCCGTTTGTTAttt--ggagcacaaaa---aaacctacgtg-------------aaacaaaatttc-----aa----agtaaaCATGTTTTTAAACATTCC-TATTTGTTGTTA-------------GCCTAAGATCAGGTCAAAGTTGCCGATAAC-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   65815 217 -   343467 --------------AGATAGACGAGCAAAGGCTAGGTCACGTGTGAAATTCTATATCACCTGTC-GAAGAATAACTGTTGTTAAA-------------TCAAATCAAAGAACAAAACATAGTTTA---TTGTTTTCC--CCGAAAACA-----ACACCTACGTG-------TTTGCAAAACAGAGCTTCAAGGGAA----GGTAAAcatgtttttaaacatttc-cgCTTGTTACCA-------------G-CTCAGGTAATGTGAAATGTTGCGATAACC
i caeJap4.Scaffold18142 C 0 C 0

a score=3970.000000
s ce10.chrX             3831094  99 + 17718866 AAAACTCTGCGAGCCCTGCCTTTTTTT---CAGTCGTTTGCCTCCTTTCATGCTTTGTGC-TGCAAGCAAAGAAAAAAGATAGTTGGCCGCAAGTGGTTCGAT-------------------
s caeRem4.Crem_Contig0   900418  83 -  4500979 aaaaaatcatgagcTCTGCATATTTTT------TAGTTC--TGCCCTCCATGCCTTTG---TGCTCTCAG---------TGAGTTAGCCGCAAGTGgttcaca-------------------
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5892390  95 + 20921866 AGAAAATCATGAGCTCTGCATAtttttttCCCGTCGCTT--CGCCCGCCCCGCTTTGTGA-TGCAGAAAA-----AACTGGAGCCGACCACAAGTAGttcaca-------------------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2175478  81 +  4147112 AG-AAATCATGAGCTctgcatattttttcttcctggGTT--CTCCCT--------------TGCACAAAA-----AACTAGAGTTAGCCACAAGTggttcaca-------------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   66032 106 -   343467 -AAAAATCA----CCcggcagtttttt---------ttc--ttctttttctatttcatACATACATATAATAGCAAAATGGAACAGGAATAAAAAGGTTGAAAGCATGGAAAGTGGTTttgt
i caeJap4.Scaffold18142 C 0 I 27
e cb4.chrX              8957164  81 + 21540570 I

a score=38472.000000
s ce10.chrX             3831193 94 + 17718866 TTTCG-AAAACATTGCTTT---------CAAAGCAACAAAC-AAGTATCGAGTTTCAACAATGGTTATGTTGGCGGGGGGACCTGGTGAAACTCGTGGT--TCTA---TG
s cb4.chrX              8957245 79 + 21540570 ttttg-aaaacattgcaTT---------GAAAGAAACAAACAAAGTATccgatttc-acaaaaataaa------------------gGGTCCTCGTGGT--TTCAGAGTG
i cb4.chrX              I 81 C 0
s caeRem4.Crem_Contig0   900501 85 -  4500979 ttttg-aaaacattgcaTT---------GAAAGCAACAAAC-AAGTATCGAATTTC-GGAATGAAAAGAC-----------CTCATGGAACCTCGTGGT--TCTAGAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5892485 81 + 20921866 ttttgaaaaacattgcATT---------GAAAGCAACAAAC-AAGTATCGAATTTC-ACAATGAGGAT--------------CTCGTGAAACTCGTGGT--ACTGG--TG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2175559 71 +  4147112 ttttg-aaaacattgcaTT---------GAAAGCAACAAAC-TAGTATCGGATTTC-ACG-----------------------CCGTGAAACTCGTGGT--TCTAG--TG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   66165 82 -   343467 tttcg-aaaaCATCGCAagggaaagaaagaaacaaacaaac-aagTATCGAATTTC-ACGA--------------------CCTTGTGAAACTCGTGGTcctcta-----
i caeJap4.Scaffold18142 I 27 I 173

a score=11453.000000
s ce10.chrX             3831287 154 + 17718866 AGAT---------------GATAGTCAGGAAGTTAATTTT----TGTCTGTTGGCCAAGTGAAGCTG-------C-CAGAGTGAATAATTGTTTAC---AAAAAAC---ACTTC-GCTCTTACTGTAGTTTTGATCTGTGAGACCAACG--ATTTCGTTTTCTGCGGAATGTTTCTCAGAGCCAT---ATGCT-
s cb4.chrX              8957324 166 + 21540570 AAGTTTCTTCTGTTCTTGTAATAGtaaaagaaagaaattgagaatttttg-----aaaa---aatttgtttttgg-cagaaaa--aaattgtttgg---aaaaaa----gtcCC-TCTTCTACTGTAGCGATGATCTGTG-----gccggaatttttttt----cgaaatgtttcttAGTGAGCTCTCATGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   900586 139 -  4500979 AAGT-----------TAGTTGCAGCGGAAGAGAAAGTCTG----TTTTTG-----AAAGCCCAGCTT-------A-CGGACCC--TAAGTGTTTAC---AAAAAACACTGACTC-ATTCCTACTGTAGTCATGATCTGTG-----Gccg--atttttttt----agaaacgtTTCTTG----------AGGCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5892566 139 + 20921866 AAGT--------------TAAGAGC--AACAGAAAGCATG----tttcta-----aaattgaaattt-------c-cggAGTATTTGAATgtttacaaaaaagaattgagcCTTCACTCCTACTGTAGTCATGATCTGTg-----accg--aaatttttt----tggaatgtttCTAAGG-----------CTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2175630 148 +  4147112 AAGT--------------TAGGAGCCGGAAGGAGAGCttg----tttcta-----aaattgaaattt-------ctcggAAACTCAAAATGTTTAT---GAAGAATAGAATCCT-ACTCCTACAGTAGGGATGATCTATG-----ACCA--AAAGTTTTTAGGGAGGAATGTTTCTTGGAGCA-----TTTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66247 173 -   343467 I

a score=-33164.000000
s ce10.chrX             3831441 213 + 17718866 CACATGCTC-AAAAACAAAC-AAAAAGTTTGAGAAAA--------ATGTTCTAAATGGA----------CAAAAG--TAT---ATTGCACAAACAGCAGGGTGAGAAAGACCACATATTAATTTTCAAAAAAAAAA-ACTCATTTAGA--TTATTGAAAACTTAATTTAGTTTGACATAACATTATAACAAAACACT-------------------------CTAATAATTTTTAGA---------------TTTTTCAAAATTCTGAGCAAAAGTT-----------------------TTGG
s cb4.chrX              8957490 218 + 21540570 CATATGCTC-GAAAACAAAC-AAAAGGCTTGAGAAAAA---TGGGGAAGTCGAATGTaa----------aaaaaa--CAT---ATG----------------------------------------AGAgaaagga-aattttttgga--atattggga-----------------------tatttaaaaaatgtgaacATGAACGCTTTTCTTCATGAAATTGTTAATCCTTTAATTGCTAGTGTTTTTTATTCCTGAATTACTGTTGCGAATTTTAAGATACagtatacagtaccggtcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   900725 115 -  4500979 CATATGCTT-aaaaacaaac-aaagggcttgggaaaa--------tgagtgcaggatgg----------caaaaa--cat---atg----------------------------------------aaaaaaagaa--------------------------------------------------taacaaaCGTT-------------------------TGGTTGGTCCACCAA--------------------------AGcaatgaaaactt-----------------------ttaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5892705 135 + 20921866 CATGCgctc-aaaaacaaac-aaatggCTTGGGAAAA----------AACTGCGAGCAA----------CAGAAG--CAT---ATG----------------------------------------AGAATATGAA-----GTCAAAA--CAATTGGGA---------------------CTTTTTGACTAAACGTA-------------------------TGATTTTTGCTCTGAAGGGAACTGGCATATGTT-------------------------------------------------
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2175778  89 +  4147112 CATAtgcttgaaaaacaaacaaaaaagcttgggaaaa----------agttgaaagaaa----------caaaaagtttt---atg----------------------------------------agaATATGAA-----ATTCCA--------------------------------------------------------------------------------TTTCCTCAGA-------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   66420 175 -   343467 CAGATGctc-aaaaacaaac-aaaaaactgggaagaaaaacgagaaaaattgaaaccaAGAGATCGCATCAAAGG--CATAAcata----------------------------------------agagaaaaaatgagcacCCAAAAGTTATTGAAAAACAACTATTCAACGTGCCCacttgagaaaaaaatggaaaaaata------------------aagtaaGTGTTTGGG-------------------------------------------------------------------
i caeJap4.Scaffold18142 I 173 I 25

a score=874.000000
s ce10.chrX             3831654 7 + 17718866 TAAATTG
s cb4.chrX              8957708 7 + 21540570 taaattg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   900840 7 -  4500979 tgcaTGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2175867 0 +  4147112 C
e caeJap4.Scaffold18142   66595 25 -   343467 I
e caeSp111.Scaffold630  5892840 1 + 20921866 I

a score=67.000000
s ce10.chrX             3831661 1 + 17718866 G
s cb4.chrX              8957715 1 + 21540570 a
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   900847 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 69
s caeJap4.Scaffold18142   66620 1 -   343467 G
i caeJap4.Scaffold18142 I 25 C 0
e caePb3.Scfld02_0      2175867 0 +  4147112 C
e caeSp111.Scaffold630  5892840 1 + 20921866 I

a score=-22345.000000
s ce10.chrX             3831662 84 + 17718866 GAAATTGTTT---TTTATTTAGACTTTTTGAG-----------------TTAGTTGTGTG-ATCACCCGCCAATTTGAAATTGTATAAA------ATTTCC--TCAATTTCTC
s cb4.chrX              8957724 83 + 21540570 acgtttactTGTGTTGATTTTAGGTGGTTTCGACCCATTTCCAGAGTCTGGAGtt------------------------cgactgtcaa------gtttccgatcataTTGAG
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold630  5892841 58 + 20921866 GATTTTATGC---CTGATTCTCGCTTGTTTCA-----------------GTGGTT------------------------CTTGTATACC------GTTGCCGCTCATC-----
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2175867 41 +  4147112 ------gttc---cttatttt---tcaataca-----------------gTACTC------------------------CCTGTGTA--------------ACTCATC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   66621 82 -   343467 AAATTTGCTT---TTTAGGTGGGTGTGCT--------------------GTAGATGGGTGTGCTAAACTGCAATAATAAATTGTgtgaatctttttttttctttc--------
i caeJap4.Scaffold18142 C 0 I 238
e caeRem4.Crem_Contig0   900848 69 -  4500979 I

a score=-7824.000000
s ce10.chrX             3831746 39 + 17718866 CATTTAAATTTGAAGTTATATGAAATTTTGAG---------------------CATTGCT
s cb4.chrX              8957807 50 + 21540570 AATGT---TTGGAGGGTATAAAACAGATCAAGACTGAAAACTTCGCATTcgca-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5892899 11 + 20921866 --------------AGAATAAGAC-------G----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2175908 18 +  4147112 --------------ATTGTATGAACAGTTAGG----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I
e caeRem4.Crem_Contig0   900848 69 -  4500979 I

a score=-22164.000000
s ce10.chrX             3831785 65 + 17718866 ----------------TCAGT--TTT---GAAACCTAGAATGT--TAACATCCAAACAATCGAAACGCAGTTTTTTGATTTTTATGGA-
s cb4.chrX              8957857 76 + 21540570 gaacttttgaaatattctagt--tttttaactatttgccgatttctgaaagaga-----------cctgtttttttcacgttttctgTA
i cb4.chrX              C 0 I 110
s caeRem4.Crem_Contig0   900917 43 -  4500979 tcatttctgaaa---tctgaT--GTTACCATAACCTAAGGAGT--TGAAA---------------------------------------
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold630  5892910 58 + 20921866 ----------------TCAGTAATTC---TCTGGATAATGCTT--CACAGTAGGAAC--TAAGCCGAGATCATTTGAACTT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2175926 63 +  4147112 ----------------TCAGT--TTCATATCAAGAATGTACTT--TGAAATATG-----TTAACGTGTATCTTTATGACTTCCACAGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I

a score=-2173.000000
s ce10.chrX             3831850 32 + 17718866 AAAATTAGTTTTTACCACTGTTTGAGTTCTAA
s caeRem4.Crem_Contig0   900960 14 -  4500979 ------------------TGTTTGAACTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5892968 13 + 20921866 --------------TGCGAGTTTGAAT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2175989 20 +  4147112 ----------ACCATGCCagtttgaattgt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I
e cb4.chrX              8957933 110 + 21540570 I

a score=-2559.000000
s ce10.chrX             3831882 35 + 17718866 AAAAAACTGTTAAACTTTTGTAAAAAAGATATATG
s caeSp111.Scaffold630  5892981  5 + 20921866 -------------ACATG-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176009 14 +  4147112 ---------ttgaactttggaaa------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I
e cb4.chrX              8957933 110 + 21540570 I
e caeRem4.Crem_Contig0   900974  0 -  4500979 C

a score=0.000000
s ce10.chrX             3831917 25 + 17718866 GACATTTTCCCACTGACGACATTTC
e caePb3.Scfld02_0      2176023  0 +  4147112 C
e caeJap4.Scaffold18142   66703 238 -   343467 I
e cb4.chrX              8957933 110 + 21540570 I
e caeSp111.Scaffold630  5892986  0 + 20921866 C
e caeRem4.Crem_Contig0   900974  0 -  4500979 C

a score=-6713.000000
s ce10.chrX             3831942  68 + 17718866 AGCTTCCAAACTTTTATTGGTGTACTCATTTTGTTACTTTTATTTTTCTAATTGTGAT--------------------GTTTTCAGTT--------------------
s cb4.chrX              8958043 101 + 21540570 accctccaaaatttttatcgaatagt-------tgagctcaagacttctgaaaatggttaagattaactgaaaaatacgtttttgtatatctgaATGACGGGTACTGT
i cb4.chrX              I 110 I 6
s caePb3.Scfld02_0      2176023   7 +  4147112 ------------------------------------------------------------------------------gttttga-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I
e caeSp111.Scaffold630  5892986   0 + 20921866 C
e caeRem4.Crem_Contig0   900974   0 -  4500979 C

a score=-875.000000
s ce10.chrX             3832010 25 + 17718866 AAA--------------TTTGAAATAACAGAAGTAACCC
s cb4.chrX              8958150 31 + 21540570 GAACTTCCCaacatctttttca--------aaacacttc
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   900974 17 -  4500979 GAG--------------TTTGA--------AAATAACCC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2176030  9 +  4147112 ------------------------------aaataaccc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I
e caeSp111.Scaffold630  5892986  0 + 20921866 C

a score=7561.000000
s ce10.chrX             3832035 19 + 17718866 TTGC-TATTCTC-AATTCCAG
s cb4.chrX              8958181 20 + 21540570 ttgc-tttttccggttttcag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   900991 18 -  4500979 TTGC-TTTTCC--GGTTTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5892986 19 + 20921866 TTGCTTTTTCC--GGTTCCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176039 18 +  4147112 TTGC-TATTCC--GGTTCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   66703 238 -   343467 I

a score=37332.000000
s ce10.chrX             3832054  86 + 17718866 TCATGCTTATTGGCGACAAAATGTCGTTTTCAGATAACG--TTACAGTTTGTTTTGCG--------------ACACGATGCTT-TCAAAAAGTTTCAACAAAG
s cb4.chrX              8958201  76 + 21540570 aCG------TTGGCGACATACTGTCGTTCTCAGATAACGCTTTACAGTTTGTTTTGCG------------GAGCACAA--------AATAA-TTATGACAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   901009  85 -  4500979 CCATTGTACTTGGCGACAAAGTGTCGTTTTCAGATAACG--TTACAATTTGTTTTGCG--------------ACACAactctt-tcaataa-tttcgacaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893005  81 + 20921866 GTCTATTATTTGGCGACAAACTGTCTTTTCCAGATAAC-------GTTTTGTTTTGCG--------------ACACAAttctt-tcaataattttcgacAAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176057  89 +  4147112 CCGTAGTATTTGGCGACATTGTGTCGTTTTCAGATAACGATAGATGGTTTGTTTTGCA--------------ACATTAttcttctcaataatttttgacaaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   66941 103 -   343467 CTATAATTCATGGCGACAACATGTCGTTCTCAGATAAGAAACAACGCTTTGTTTTCCTTTCTTCTTGCCTAAACACtgttaattttgaaatttggcAACAAAT
i caeJap4.Scaffold18142 I 238 I 36

a score=-3317.000000
s ce10.chrX             3832140 25 + 17718866 AGAG-----------AGTTGCTTCT-AGATGT-----AAATT
s cb4.chrX              8958277 16 + 21540570 AGAG---A------------------AGcttg-----aaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   901094 34 -  4500979 gaaa---attattatgattgcttttcagattc-----tgatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893086 27 + 20921866 GAAA---------ATGATTGGTTTT-AGGCAC-----TGATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176146 41 +  4147112 AAGAGACACGATTGTGATTGCTTTT-AGATGCCTGCTTGATt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67044 36 -   343467 I

a score=29463.000000
s ce10.chrX             3832165 112 + 17718866 GATA---ATTTGAAATGTC-AAAAACCCCCCGCGTACGCGTTTCTT---CACA---------------AAAAGGAAGCAAAGAGTGAAAATAATGAT-------GATCACGTGA-GAAA--ACAAGTGGTCTTTTTTC---AAGCGT
s cb4.chrX              8958293 115 + 21540570 gata---atttgaaGTGTCAAAC---------CGTACGCTGTCTTTTCACATT-------cggaagg-agaagaaataata-ataataattgaTGAT-------GATCACGTGA-GAAA--ACAAGTGGTC-GTTTTCTTTAACCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   901128 103 -  4500979 gATA---ATTCCAAATGTC-ACC---------AGTATGCCGATTTT---CATT-------CGATTTACAGAAGGAAAAGTA-TGCGGGAATAATGAT-------GATCacgtga-aaaa--atgagtggtt-tttttC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893113 109 + 20921866 GATA---ATTCGAAATGCT-AAC---------CGTACGCttct--c---aatt--gaaaatgaaatacagAAGGAAGGAAA--GTTGAATGAATGAT-------GATCACGTGAGGAAA--ACAAGTGG----TTTTG---AAGCGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176187 114 +  4147112 gataattatttgaaatgcC-AAC---------CGTACGCTTCTTCC---CATTCACAAACTTCAATACAGAAGgacggaaa---ttgaaataatgat-------GATCACGTGA-GAAA--ACAAGTGG----TTTTC---AAGCGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   67080 104 -   343467 GATAAT-ACTTGAAATGTC-AGC---------CGTACGCTTCT--C---aatt---------------agagaaaaataaa-------agcaatGTTTGAATCAAATCACGTGA-GAAAACACAAGTGGTT-CATCTC---AAGCGT
i caeJap4.Scaffold18142 I 36 I 15

a score=5820.000000
s ce10.chrX             3832277 29 + 17718866 TGACGGGACGTTTG---TGAGAAAAAAAAAAC
s cb4.chrX              8958408 25 + 21540570 TGAGGGacgatttt---gg----aaaaaaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   901231 20 -  4500979 -----gagcgtttt---tg----aaaaaaaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893222 28 + 20921866 TGAcggacatttttttttg----aaaaaaaac
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176301 22 +  4147112 TGacggacattttt----------gaaaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67184 15 -   343467 I

a score=109941.000000
s ce10.chrX             3832306 268 + 17718866 CGTCAATC------GCTCGGTCATACC-ATCAGGTTGTTAAAC---TTT--TCGAA----ACAAACAACAAAAATAACAAGGGG--TTTTTCGCGTTGGG----------AACTGGTTTCGAAACA-TAAAATGAGGTTGAACATCGGGCA--ATCGAACGAGAAGA--------CAAAAAATTGCAGA-------------TTCGTTGTGTTGTTTTGTCATCGTTG--GCGGTAAGGGTAACAAGAATTCGACACACG-----GACGCAAA-------AAAAAATAA--------------------------------TGTAAAGTGTAAGGGGACCAGACATCTCAGTGG----------GAGAAAAAAACT--
s cb4.chrX              8958433 316 + 21540570 tgtcaatt---cGGGGTCGGTCATACCAATCAGGttgttaaactttttt--ttgaa--acacaaacAGCAAAAATAACAA-GGG--TTTTTCATGTTGAG----------AACTGGTTTCGAAACATTGAAATGAGGTTGAACATCGGGCAACATTGAACGAGAGACCGAcggtgaaaaaaattacaga----------tttttcgaCAC-TGTTTTTGTCATCGATG--GAGGT----ATTCAAGTA--CTTACATTTG-----ATTGATAC------------ACAAAGTTGGGGGGTTATTTTTTCCATGCCTAAGGATTAAAAGTAGAAAGAGTCTTCTAAAAAGAAGGAA---TGAGCTGAACACATCAG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   901251 261 -  4500979 tgtcaatc------GGTCGGTCATACC-ATCAGGTTgttaaac--tttt--tcgaa--acacaaacaacaaaaataacaa-ggG--TTTTTCATGTTGGG----------AACTGGTTTGGAAACA-TGAAATGAGGTTGAACATCGGGCA--Atcgaacga-------------aaaaaaattgcaga-------------ttcGATGTGTTGTTTTGTCATTTTGG--GAGGTGA-GGTACGAGTA--CCTACgaatg-----attgaaaa-------agaagaccaAGTTGG--------------------------tttaaaataggaaaa------taaaaactttga----------gaacAAAGAAG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893250 265 + 20921866 cgtcAATC------GGTCGGTCATACC-GTCAGGTTGttaaac---ttt--tcgaa--acacaaacaacaaaaataacaa-GGG--TTTTTCATGTAGGG----------AACTGGTTTCGAAACA-TGAAATGAGGTTGAACATCGGACa--gttgaac----------------aaaaaattgcaga-------------TTCGA--CGTGTTTTTGTCATCGTTG--GCGGTATGGGTGAGAGTA--CCTACGGCTA-----ATTGAAAA-------GATAGGACACgatg---------------------------ttagaaaa--aaaatgaatgctGAGAACAGCGA-----GGGATGGGACCAGAAAT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176323 253 +  4147112 tgtcaatC------GGTCGGTCATGCC-ATCAGGTTgttaaac---ttt--tcgaa--acacaaacaacaaaaataacaa-gGG--GTTTTCATGTTGGG----------AACTGGTTTCGAAACA-TGAAATGAGGTTGAACATCGGGCA--ATCGAACG--------------AGAAAAATTGCAGA-------------TTCAGATTGTGTTTTTGTCATCGTTG--GCGGTAAGGGTGAGAGTA--CCAACGCTCG-----ATTGAAAA-------AAggcaacat-------------------------------tcaaaaaatgaagttcaataCTAA-------------------GGGACCAGGAGC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   67199 329 -   343467 TGTCAATCCATCAGGTACGGTCATACC-ATCAGGTTGTTAAAC---TTTCGTCGaaacacacaaacaacaaaaacaacaa-gggTCTTTTCCGTGTTGGGGAGGGAGGAAAACTGGTTT--AAACA-TAGAATGAGGTTGAACATTG--CA--ATCGAATTGGatgag-------gaaaaaattgcagcaaacaaagaaaattgtgttgtttttgtttgacATTGCTGCTGAAATGTGTGAACAAGTG--TGAGGAGAcgggaaaattggaaatagcgcaaaaaaagtacgtt----------------------------tgtaagaaggaagaagaagaagaacaagaacaagCATCCGAGTGGGACCACAAACCT
i caeJap4.Scaffold18142 I 15 I 487

a score=-7211.000000
s ce10.chrX             3832574  69 + 17718866 TTAATAAAAAGATAAA---------------GTGAGTCAG--------------------CGATT--TTTTGGA-----------------TTTTTGATCAGAAATAATATTGATAAAATAAT------
s cb4.chrX              8958749  70 + 21540570 -------GGAGATAATA--------------ATGAGTCAG-------------------TCAATCGGGTCCAAA-------------GTGATTTCTGATCAAA------ACAGCTAAGTGTGAAGTTCC
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig0   901512 100 -  4500979 -------TGGGACAGAATACCTTGAAAAGCGATGTCTTAGATTTGGTTTGAGgaaccattcaaaaaattttaga-------------gttATTTATGATCACG------ACAGATAAGATCAAAAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893515  80 + 20921866 CT---CGAGAGATAAA---------------ATGAGTCAG--------------------GATTTAGCATCagacgaaaaaaactttgtgaTTTTCGATCACA------Acagatcaaaaaatc-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176576  77 +  4147112 CT-----AGAGATATA---------------ATGAGTCAT--------------------AGAAAAAGGTCAGA-AAAAGAAGCTGGATGGTTTTTGATCATA------ACAgatcaaaatatc-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67528 487 -   343467 I

a score=-2214.000000
s ce10.chrX             3832643 37 + 17718866 -------------------ATC-ACTCTCACTTTCTCACGACTTGATTTGATTTCCG
s caeRem4.Crem_Contig0   901612 52 -  4500979 -ATCAGGATGTT----ACATTTATTCATCCTTTTGTTTCAAAGGGATTGGATTTCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893595 36 + 20921866 ct--------------aaactt-ttcatcatttcatc------GGATCTTATCTCTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176653 50 +  4147112 attttggGTGTTTCACGCATTC-TTTATCCTAGCATC------AGATCTGATTTCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67528 487 -   343467 I
e cb4.chrX              8958819 43 + 21540570 I

a score=16503.000000
s ce10.chrX             3832680 465 + 17718866  
s cb4.chrX              8958862 533 + 21540570  
i cb4.chrX              I 43 C 0
s caeRem4.Crem_Contig0   901664 519 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5893631 527 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2176703 551 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   67528 487 -   343467 I

a score=12658.000000
s ce10.chrX             3833145 45 + 17718866 AATATTCACAAACAACGGGGG----------CGTATTATGAGAACCATA--TTGATT-----
s cb4.chrX              8959395 51 + 21540570 a------aaagagaatgggGGCGGTGTACGTCGTGTTATGGGAACGCttcattgttt-----
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   902183 39 -  4500979 -------ACAGGCAGTGGGGG----------TGTGTTATGAGAACGTTTC-TTGTTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5894158 35 + 20921866 -------TCA---TGCGGGGG----------TGTGCTATGGAAATATTA--TTGTTT-----
i caeSp111.Scaffold630  C 0 I 232
s caePb3.Scfld02_0      2177254 37 +  4147112 -------ACAAGGCGCGGAGG----------CGTGTTATGAGAACGTTA--TTGTT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   68015 51 -   343467 AATATTCACAAGTAACCGGGA----------CGTATTATGGGAACGTTAT-TTGTTTCCCTT
i caeJap4.Scaffold18142 I 487 C 0

a score=-5176.000000
s ce10.chrX             3833190 31 + 17718866 CGGAAATCATGTCTATTATGTGTGCGTGTTT
s cb4.chrX              8959452 31 + 21540570 tGCATATTATTGTTTCCATGTGTGGGTGTTT
i cb4.chrX              I 6 I 188
s caeRem4.Crem_Contig0   902222 23 -  4500979 ----CACGAGTGTCgcc----gaaaatgttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2177291 28 +  4147112 ---TTAcgattgtttttcttctctcatctTC
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   68066 23 -   343467 ----CCCGAATGATGATGTGCATGCAT----
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5894193 232 + 20921866 I

a score=-673.000000
s ce10.chrX             3833221 28 + 17718866 -------------TTTGCTGGTTTTTGTGTGTTTGAATGGA
s caeRem4.Crem_Contig0   902245 24 -  4500979 -------------tttgt---tttctgtgtttttg-gCAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2177324 23 +  4147112 -------------tttgt---ttttt-tgtttttg-tcgaa
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   68089 36 -   343467 TATGTTATTGTTGTTTGT---TTTGTATGTTGCAA-TGGA-
i caeJap4.Scaffold18142 C 0 I 169
e cb4.chrX              8959483 188 + 21540570 I
e caeSp111.Scaffold630  5894193 232 + 20921866 I

a score=-1557.000000
s ce10.chrX             3833249 35 + 17718866 ACAAAAGTTATATTAAACATTGATGTTGTTTTCAT-----
s caeRem4.Crem_Contig0   902269 34 -  4500979 ACGAATAATGTTTCAC------ATAATATTTCGTTTTGAT
i caeRem4.Crem_Contig0  C 0 I 117
s caePb3.Scfld02_0      2177347 21 +  4147112 atgaaaga--------------aaagtgtttcaat-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68125 169 -   343467 I
e cb4.chrX              8959483 188 + 21540570 I
e caeSp111.Scaffold630  5894193 232 + 20921866 I

a score=-1367.000000
s ce10.chrX             3833284 108 + 17718866 ATAGTACCAATATTTTGACTGAGTGTATTTTTTTATGCTACAACAACAAAAAAAATGTGAGGAATGCTTTACGCTTAGGTAAGAACCAAGCAAAATCCGTACTTCATT
s caePb3.Scfld02_0      2177368  65 +  4147112 a-------aaagtttCGAAGAGGTTT-----------------CATcaagaaaa---cgag---------------agagaaaaacaaaacaccaTTAAAATTCCA-A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68125 169 -   343467 I
e cb4.chrX              8959483 188 + 21540570 I
e caeSp111.Scaffold630  5894193 232 + 20921866 I
e caeRem4.Crem_Contig0   902303 117 -  4500979 I

a score=-37820.000000
s ce10.chrX             3833392 526 + 17718866  
s cb4.chrX              8959671 672 + 21540570  
i cb4.chrX              I 188 C 0
s caePb3.Scfld02_0      2177433 280 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68125 169 -   343467 I
e caeSp111.Scaffold630  5894193 232 + 20921866 I
e caeRem4.Crem_Contig0   902303 117 -  4500979 I

a score=-1978.000000
s ce10.chrX             3833918 16 + 17718866 TCAATCTTC-----------GGTTGTC
s cb4.chrX              8960343  9 + 21540570 tcaaactga------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   902420  9 -  4500979 tcaattttc------------------
i caeRem4.Crem_Contig0  I 117 C 0
s caePb3.Scfld02_0      2177713 20 +  4147112 TCAACTTTGATGAAGGCATC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68125 169 -   343467 I
e caeSp111.Scaffold630  5894193 232 + 20921866 I

a score=10128.000000
s ce10.chrX             3833934 108 + 17718866 TTTTGAGCAAACATGACTGATCTTGCTCTTCCG---------TGATCTACCATAACTTTTGGTCAA-ATTTTGTAATTACCGCC-----CTGGCTCAAAAATCGGTAAACCAATAC-TTTGAGT
s cb4.chrX              8960352 106 + 21540570 -t--agTTGTACACTTTTAAAACTATTGATCTA--TCCAACTTGATCTACAATAGTCTTCCAACtg-atatttttttgcaattg-----taagctcaaaaatcagtgAGCCAATA-------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   902429 113 -  4500979 -ttcaaataaacACAATTTATCTTGTCTTCCTT--TCCGGC-TGATTTACCGTAGGCTCTAGCCTT-AAATTGTAATTAGCGTG-----CTAGCTCAGAAATCAGTAAGCCAATAC-TTTCGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5894425 104 + 20921866 TTCTGAGTAAATACAATGAGCCCTAATGCTCTT------------------GTAAACTTTTGTCTA-ATTTTGTAATTAACGTGGCAGTCCGACTCGAAAATCAGTAAGGCAATAC-TTCAGAT
i caeSp111.Scaffold630  I 232 C 0
s caePb3.Scfld02_0      2177733 119 +  4147112 TTCAGAGCAAAT---ATGAAAcatcttgttcttttttccgc-TGATCTACCTTAACCTTTGATCTATTTTTTGTAATCAACCTGGTTGTCTTGCTCGGAAATCAGTAAGGCAAGACATTTTGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   68125 169 -   343467 I

a score=55774.000000
s ce10.chrX             3834042 121 + 17718866 ATGTTGTGGCGCAAT----GTGTATTGTTT-----GCCAAGGGCAAAAGTTAAACATTTGTGCGTGG----CCGTCAAAGTT-GAAGCGCTC------------TTACGTGGATTGA-CGGTGGCAACAC----------------------------TTATGCGCCTGGAGTGTT
s cb4.chrX              8960458 154 + 21540570 ATGTTATGGCACC------GTGTTTTGTTTACTCAGCCGAGGGCAAAAGTTAAACA-ATGTGcgcaa---------aaaattcgaaactctcTCCTTTCCTATTTTACGTGAATCGC------ACGGAGCACCAACATTTTCTCTCCATTCATCTCTCTCACACACCTGGAGTGTT
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   902542 148 -  4500979 ATGTTATGGTGGCACAATGGTGTTTTGTTTGCTGAGCCAAGGGCAAAAGTTAAACA-ATGAGCGCGGGTCCCGTCTAAAATTCGAAACGCTC------------TTACGTGGATTGCTCTCCGATGGAGCAACAA-----TCTTCCGA----------TCGCGCACCTGGAGTGTT
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold630  5894529 125 + 20921866 CTGTTGTGGCGCAAC----ATGTTTTGTTTGCTGAGCCCAGGGCAAAAGTTAAACA-ATGagtccaa---------aaaatt-gaaacgcTC------------TAACGTGGATTGGTTGCCGGCGGAGT----------TCTG--------------CCGCGCACCTgaagtgtt
i caeSp111.Scaffold630  C 0 I 14
s caePb3.Scfld02_0      2177852 126 +  4147112 -TGTTGTGGCGCAAT----GTGTTTTGTTTGCAGAGCTAAGGGCAAAAGTTAAACA-ATGAGCCCCG-------TCAAAATT-AAAATGCTC------------TTACGTGGATTGCCTGCCGGCAAAGT----------TTTG--------------CCGCGCACCtggagtgtt
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18142   68294 112 -   343467 ATGTTATGGCACACTATGTGTATTTTGTTTGCAAACGTAGGGGCAGAAGTCAAACA-ATGAGCGCCG-------------TC-AAAGCGC--------------TTGCGTGGATTGT---------TAGC----------CCTG--------------C--CGCTCCTggagtgtt
i caeJap4.Scaffold18142 I 169 C 0

a score=-6642.000000
s ce10.chrX             3834163 10 + 17718866 --------------------------ATTCAATAGA-----------
s caeRem4.Crem_Contig0   902700  6 -  4500979 --------------------------ATTTCA---------------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  5894668 10 + 20921866 --------------------------ATCTTGAGgg-----------
i caeSp111.Scaffold630  I 14 C 0
s caePb3.Scfld02_0      2177990 10 +  4147112 --------------------------atCCAAAGAA-----------
i caePb3.Scfld02_0      I 12 I 4
s caeJap4.Scaffold18142   68406 47 -   343467 atttttttttctttttcttttttttcactggGAGGAagatagataga
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8960612 19 + 21540570 I

a score=-21788.000000
s ce10.chrX             3834173 623 + 17718866  
s cb4.chrX              8960631 778 + 21540570  
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   902706 705 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5894678 654 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2178004 709 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   68453 661 -   343467  
i caeJap4.Scaffold18142 C 0 I 423

a score=-33552.000000
s ce10.chrX             3834796  94 + 17718866 TAG--TTTTATTAATAATTATCTAAA--------------AGTGTagaaaaag--tttcgtaatcat------ctactataac----------------tgtaaaaacatttatagaattttaaaaacttttta-----------------
s cb4.chrX              8961409 115 + 21540570 ttgtatttgaaaaatgc--tgataaaagacattt------tttgcaataaaag--TTCTAAACAGTTAAAAATATACAATAAGCTACTGTAACAat---gttataaaattttgaaaaattgta------ttgag-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903411  59 -  4500979 TAG-----------------GATAAA-----------------------------------------------ACAGAATATGGTATCTCAAGAA-----ATATAAACTTTTACCTGGTTTTA------TGTTA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895332  79 + 20921866 -----TTTTAGAAATCA-----------------------TATTTGATGAAGT--TTCTGATTTGTT------TGAGATGAAG----------------TatgaaaaaatgcgaaatACGAT-----------------AAGAAgttt---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2178713 139 +  4147112 AAGTCTATCATAAATCATTTGATAAGTAAGTAGCGTTCTCTCTATATTGgaatcattttgatttgat------agATGAGAAGATAACTTGAACATCGTTAATTAAATATTTGGAGAAAGATG------TTTTGAATTGGAGAATTCGTTA
i caePb3.Scfld02_0      C 0 I 186
e caeJap4.Scaffold18142   69114 423 -   343467 I

a score=-18148.000000
s ce10.chrX             3834890 118 + 17718866 cgcctttttcagttttgcgaaCAATTTCAAATAGCTGATTCGGTTTAGAAAAGCGGAG------AAAATCCATTTAATTTAGTC-GGAAAACTCCTACAAAGTGAGCATGGCttaatcagccagt------------
s cb4.chrX              8961524  97 + 21540570 --gcCCTTACactttc---aattatctcgat----------tcttcaagaagatacca------aaaagtggt---ctacATAC-AAAATACTTTTGC---------------CATTCTGATAATCAAGTTATCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903470  57 -  4500979 --GACCTCACA-TTTT---AATTGCTACAAA----------TTTC-----AACTTCCG------TATAGTGATTAACCACACAC-----------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895411  97 + 20921866 -------gatattttg---aaaagtttgaaag---cAGTACTCATTACAAAACTGTCGAGACTCTACAGTTGTTTAAAATAGTCTATAACTCAGTTTC---------------TTTCCGAATAGT------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2178852 186 +  4147112 I
e caeJap4.Scaffold18142   69114 423 -   343467 I

a score=-10704.000000
s ce10.chrX             3835008 53 + 17718866 tgaactttttttgcaaaa-----ttaaaaaaaaaa--------------cattaaaaaaatttag-------------aaagatt
s cb4.chrX              8961621 47 + 21540570 -----TGAGAActttaaa-----ataataaaaag---------------tcttacaagaatcgag-------------aaaaatt
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   903527 41 -  4500979 -----------TTTTCAA-----ATAAGAAGAAA---------------CATGACAAGGAACCAA-------------ATGGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895508 37 + 20921866 --CGGTctttgttcaaaa-----acaataa-------------------tttttca----------------------actgatc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179038 85 +  4147112 TGCACTTTTTGCTCGTAAAACGTACCATAAATTGTTTGAACGTCGGCTCTTTTTCATATGTCAAACCATTTACGTTTTATGGCTA
i caePb3.Scfld02_0      I 186 C 0
e caeJap4.Scaffold18142   69114 423 -   343467 I

a score=-3174.000000
s ce10.chrX             3835061 32 + 17718866 ttataaggttttttacagttgaaatcggtcat
s caeRem4.Crem_Contig0   903568  5 -  4500979 ---------------------------GGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895545 28 + 20921866 ATACAAAATTGTCGA----GGAACTAAACCGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179123 28 +  4147112 ACACTTAATTACCCA----TAACTTTTATCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   69114 423 -   343467 I
e cb4.chrX              8961668 16 + 21540570 I

a score=-24852.000000
s ce10.chrX             3835093 84 + 17718866 ----------tatggCAT-------------AGTTCATAGCAAGAAGCAAAATCACCACGCATTTAAGCATTGataattttttaatatctatttta------------tataaaa---aaGA
s cb4.chrX              8961684 56 + 21540570 ----------taaagcat-------------actt-----gcaaaatcag--------------cgCCCGGG-----ttc-------ttcaatttg------------aaaaaaaaattgta
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   903573 74 -  4500979 Tatggaaatatcaaaaat-------------ac-------ggaaaaacaaaat-------attttgaccGGT-----TTTCAAAGGACTAAATTAT------------AGGAAAA----GGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895573 64 + 20921866 --------TTTTACATATGGTCTCCCGGTTTCCTT-----TCAATAA------------------------------TCTAAGTACATTCactcaa------------aaaacga---ataa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179151 84 +  4147112 --------TGTGAAATAT--TCTAcc-----tctt-----caaagaaaaa----------ctgtcGGGCAGT-----TCTCACAATTTTCGTTCTATGGagggaatttcaaaaga---ttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   69114 423 -   343467 I

a score=-2393.000000
s ce10.chrX             3835177 7 + 17718866 AACGAAA-
s cb4.chrX              8961740 6 + 21540570 atttca--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903647 6 -  4500979 ATCGGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895637 6 + 20921866 atgGGA--
i caeSp111.Scaffold630  C 0 I 101
s caePb3.Scfld02_0      2179235 6 +  4147112 atcaga--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   69537 7 -   343467 ACCGAA-A
i caeJap4.Scaffold18142 I 423 C 0

a score=-7146.000000
s ce10.chrX             3835184 37 + 17718866 AATGTTCGGAAAGCTGTTCAAATCAATTAAATGTTAA-----------------
s cb4.chrX              8961746 25 + 21540570 --------gaaacattttcac----atttttttttga-----------------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   903653 25 -  4500979 --------GAGGATTGTTTGT----GTTTGATGTTat-----------------
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0      2179241 25 +  4147112 aaagtt--gaaagcTTTCCAC----------TTCTGA-----------------
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold18142   69544 41 -   343467 -ATTTC--AAGAGCTTATTAG----------CGTTAGAAAAAGTAAGAGACCCA
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5895643 101 + 20921866 I

a score=-2791.000000
s ce10.chrX             3835221 21 + 17718866 ---ATAATAATATGATATTACTCA
s cb4.chrX              8961781 16 + 21540570 ---atggacattttttatc-----
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   903687 16 -  4500979 ---aggaactattgataac-----
i caeRem4.Crem_Contig0  I 9 C 0
s caeJap4.Scaffold18142   69585 24 -   343467 AGAATATATATTTAAACTTACCTA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2179266 36 +  4147112 I
e caeSp111.Scaffold630  5895643 101 + 20921866 I

a score=-4999.000000
s ce10.chrX             3835242 24 + 17718866 -------------TCAAAAA---------------------TTACTTTA----TTTACAGAG--
s cb4.chrX              8961797 25 + 21540570 -------------ttgaaaa---------------------gtgtttta---cttgacagaa--
i cb4.chrX              C 0 I 121
s caeRem4.Crem_Contig0   903703 15 -  4500979 -------------ttgaaaa---------------------atatttga---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2179302 46 +  4147112 -------------tcgaaaatggaaagtgGTACCTTCCTCGTTATTTGA---ACACACACTG--
i caePb3.Scfld02_0      I 36 I 2
s caeJap4.Scaffold18142   69609 43 -   343467 GCAATAAagaaattctaaaa---------------------ataattgaaaaacaaatactgaa
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5895643 101 + 20921866 I

a score=-3539.000000
s ce10.chrX             3835266 16 + 17718866 GTCCT-------AATTGAAGTGT
s caeRem4.Crem_Contig0   903718  7 -  4500979 ------------aaaaaat----
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2179350 16 +  4147112 TTTTT-------AATTGTTGGAT
i caePb3.Scfld02_0      I 2 I 10
s caeJap4.Scaffold18142   69652 17 -   343467 gttttgaatgtgaatgg------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8961822 121 + 21540570 I
e caeSp111.Scaffold630  5895643 101 + 20921866 I

a score=-14871.000000
s ce10.chrX             3835282 80 + 17718866 ------AACATCAAAAACA-------ACCTGCATGATTAAAT--GGGCCATGATAATAACACAGCGGGAA--------------AAGAGCAAAATATGCTGTTCAAAAA
s caeRem4.Crem_Contig0   903728 32 -  4500979 ------aata--aaaaaca-------------------------gagGCTTGATCAGCAC-AAATA-------------------------------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5895744 85 + 20921866 ------AACA--ACAAACG------------GGTAATTAGAGAATAAATATGATGATTAAGGAAGAATGATAAGTAGgtat---gaaaacaaaatattttg-acaCAAA
i caeSp111.Scaffold630  I 101 I 10
s caePb3.Scfld02_0      2179376 84 +  4147112 ------aaca--aaaaacaaaaacaaac---gatAATTATAG--TCAGGATGATAATTACGAAATAACGA-----GGATATAGCGATAACAGATTATTTCG-------A
i caePb3.Scfld02_0      I 10 I 16
s caeJap4.Scaffold18142   69669 76 -   343467 aaactcaaaa--aaaaata-------------gaaataaaaa--tgacattgaaaatag--gaatgagca--------------aataacaaaactgacagtagaaaaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8961822 121 + 21540570 I

a score=-33284.000000
s ce10.chrX             3835362 125 + 17718866 CTAAATTATAGG---------AAAATATTATTTGTG---TTGTATGCTATAAAAGCAAG----------AGGAACGACTGATAACTATTGAGG-------------------------------------AAACTAGTATTTAGTTAAAGA----------AAAAAAT-------------TGTTTGTCTTGA---------ATGAATCACAATGT
s cb4.chrX              8961943 185 + 21540570 acaaaccaaaaaaatcagagagaAAG-GAATTT------GTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATAGCTCTAGAGG---CATATAACGATGTTACGATTcaaaaaacagggaaaaatAGGGGCTTGATCAGC------------AAAATATGATTG--------TTTGTGTGCTAACATAAC-ATATGAATCAGAAGGT
i cb4.chrX              I 121 C 0
s caeRem4.Crem_Contig0   903760  95 -  4500979 -TAAAC----------------------GATTT------GTTTGTATTGATACA---------------ATAAATGATTCATAGAT---AAGG---TATA--------------------------GGAATTATAATAATTTGAC-------------------ATATTAT------------------ATAATACAAC-AT-------GGAGGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895839 153 + 20921866 -taaattataGAGGAGA----GAAAGTGAATAGAAGAATATTTGTGTTAAAAAAGACAG----------AGAAACAACAGATCatttgaaatg--------------------------------gagaaaaacaaggGCTTGATCAGCAG----------AAAATGTGATAG-----GCTTGTTTGTCGTGACATAAC-ATATGAATCATGATAC
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2179476 159 +  4147112 Ctaaactataaaaatgaaatcgaaattgaatttctg---ttttgtgtTAGAGAGGA-------------AGGAACAAGTGATAACTTGAAAAGTGATGTA------------------------AAAGAAATACAGGGGCTTGATCAGCA-----------AAAATATAATAG-----GCTTGTTTGTCGTGACACAAC-ATATGAATCATGATAC
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18142   69745  97 -   343467 ----------------------------------------------ccagaaaaac-------------agTAATATC-----------AAAG-----------------------------------------TGGAACTTGATCAGAAAACATTTGAATAAAACATACTGCAAAACGCATGTTTGTCTTGA--TAACGATAACAATCT------
i caeJap4.Scaffold18142 C 0 I 42

a score=-10907.000000
s ce10.chrX             3835487 30 + 17718866 G---GGCCGAGCTTATAAAAGCTTATTAAGAAA
s cb4.chrX              8962128 22 + 21540570 A---TACGGTATCAAG--------attaataat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903855 19 -  4500979 A---TGtaatatc-----------tttcaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5895992 19 + 20921866 C-------GTATTTGGATAA--TATTTA-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179635 31 +  4147112 AGAGTACGGTATGAGgatta--taacaaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   69842 42 -   343467 I

a score=-16258.000000
s ce10.chrX             3835517 117 + 17718866 AAAAATTGAGAATAGAATAA---------TTGATATTTTTAATATAAAGATA---AGG-------------------------------------AAAA-----------------------------ATTATACAAATGGAAAAAAAAGATCGAAGGACACAAACATATGTCCTC--------------GCAGAAAA-GAGCTCCTGAT
s cb4.chrX              8962150 154 + 21540570 attaataataaattgaacaataata--tattgagatcattgaaataaaaaac---aag---------------cG----------------TCTTACAA---------------TGTTGCGC-GTCTAATgaatgagaaaagaagaggagccaga-agaaaaaaacagatgtcttacaaaatg---aaggagaagaaagGGGCGCCTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903874  87 -  4500979 atccctcaT------------------TGTTGCAGTCTTGATGATAAATAAT---aag--------------------------------------------------------------------------------------gaggagagagagaaaaaaaaacagatgtCCT---------------AGAAGAAA-GGGCTCCTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896011 139 + 20921866 ATTTATAAG--ATCACACAACAATG--CATTCatatcttgaaaaaagaaagg---aag-------------------------------------aaaGCT-----------TTTGTTGCGG-TCTTGATGAGAAATAATGAGAGAAAGGAAGGcaggaaaaaaacagatgTCCTC--------------AGAAGAAA-GGGCTCCTGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179666 141 +  4147112 atatattta--atTATACAACAAGG--CTTCcgtatcttcaaaaaacagaggAATAAG-------------------------------------ACAGCC-----------ATTGTTGCGgttcttgatgaaaaataatgagagaaagg--ggaagaaaaaaaacagatgtcCTA--------------GGAAGAAA-GGGCTCCTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   69884 181 -   343467 ---------------AAAAATAGCGAATGGGGATGTTTTCAAGACATTTAAA---AATGCTTCCTACTTCCAACGAAATGTTGTCATGCATTTTCAAAGTTGACAAATGACCTTTGTTGCGgtttcaaaccaaaaaaattgacagg----------AAAAAACAAAGGACGTCGTCTCTGTCGTCTCGGCTCACAAAT-GAGTTATTGGT
i caeJap4.Scaffold18142 I 42 I 49

a score=27159.000000
s ce10.chrX             3835634 48 + 17718866 GAATTATGAGTTAGGTCT---GCGACACGACCTC-TCCTTTGTTT-------ATAGTTT
s cb4.chrX              8962304 59 + 21540570 GAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTAtatgtagtttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   903961 49 -  4500979 GAATTATGAGTTTTGTCTG--GAGACACAACCTc-tcttttgttt-------gtttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896150 48 + 20921866 GAATTATGAGTTAAGTCT---ACGACACGACCTC-Tcctttgttt-------atttttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179807 48 +  4147112 GAATTATGAGTTGGGTCT---GCGACACGACCTc-ttctttgttt-------atttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   70065 49 -   343467 I

a score=72027.000000
s ce10.chrX             3835682 220 + 17718866 CTTTTTT-----------TTTTTGAAATAGATAGTTACGCAAAA-TTC-------------------AGCGGGCATA-CC--CTTCAAA-----ACATTGA----ATGTCGGCAGCAATGA-----GAA----GAAAACTGTTTATTTTGGCAT-AAACGTGTTTAGCATCGCAACCTTGACGATAGAATACGAAAAGAGGTACGCATGCAAAAAAAAAACATACACACATACATACACAACTAC-----CACACAAGGGTGAGTCAGGT---GTTCGGAC
s cb4.chrX              8962363 216 + 21540570 tttgtcttttctggagacattcaaaaatagtcT--C-----TACTTTCTC----------------AAGGATGGTAAGGC--CTTCACACAGACACAGCAAAAATGTGTCGGCGGATTTCTTCTCAGAAGAGCGAAAACTGTTTATTTTGGCAT-AAACGTGTTTAGCATCGCAACCTTGACG-------ACGAAGGtggga-----tgaaaaaaaaaa-----------------cagaact----------aCAAGGATGAGTCAGGTGGCGTTCAGAC
i cb4.chrX              C 0 I 497
s caeRem4.Crem_Contig0   904010 192 -  4500979 ctcctct------------ttcaaaaatagtta--cGCGAATAC-TTCAC----------------AGGCAGAGTTA-CC--CTTCAGA----------------ATGTCGGcagaattct-----gaa----gaaaactGTTTATTTTGGCATAAAACGTGTTTGGCATCGCAACCTTGACGGTGGAATAAGAGGGTatgc-----tttaaaaaaaca-----------------gagaacTAC-----AACACAAGGATGAGTCAGGT---GTTCGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896198 188 + 20921866 ctttcct-----------atttgaaaatagtta--tACGAAAAC-TTTTC-----------------TGCGAGGCTA-CCCTCTTCAGA----------------ATGTCGGCAGAAATGT-----GGA----GGAAACTGTTTATTTTGGCAT-AAACGAGTTTGAA-TCGCAACCTTGACGATAGAAT----AGATgggt-----tgaaaaaaaaca-----------------gagaactAC-----AACGAAAAGATGAGTCAGGT---GTTCGGAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2179855 184 +  4147112 -----gt-----------gtttgaaaatagtta--tACGACAAC-TT--------------------CAGATGGTTA-CC--CTTCAGA----------------ATGTCGGcggaattct-----gaa----gaaaactgTTTATTTTGGCAT-AAACGTGTTTGGATTCGCAACCTTGACGGTAGAAT---aagaggttt-----tcaaaaaaaacacccT-------------CAGAACTAC-----AACACAAAGATGAGTCAGGT---GTTCGGAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   70114 197 -   343467 ctttttt------------tttcaaaaaactca-------aaac-ttcCCGCCcacacaaacacacacacaagTTGA-TC--CTCGTAA----------------GTGTTGACAGAAATGAAATGAGAC----TAAAACTATTTATTTTGGCAT-AAACGTGTTTG-----GCAACCTTGACG----------AAGGCGaat-----tgaaaaggaaaa-----------------aaaaacagcgactAAACGTGAAGGTGAGTCAAGT---GTTTGGAC
i caeJap4.Scaffold18142 I 49 C 0

a score=10181.000000
s ce10.chrX             3835902 65 + 17718866 GCTAACACAGTATTCGGA-GAAGGAAAA-----------TCTTAAACGTGGGTGTAAAGTTTAACAAA---CATATAATG
s caeRem4.Crem_Contig0   904202 69 -  4500979 --------AGTTTCTGAACAGGGAGAGATTaaaaaagtgtccaaaacGTGGGTGTAAAGTTTAACGAA---CCCATAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896386 75 + 20921866 AGTAAGACA---TTTGGA-ATAGAGGAAGGAAAACAACGTCTAAAACGTGGGTGTAAAGTTG-AAGAAACTTCTATAATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180039 75 +  4147112 AGTAAGGCAGTTtctgag-aatgagaaaaaaaattaacgtGTTCAACGTGGACGTAAGGTTT-ACAAA---CTTATGATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   70311 66 -   343467 --------agttctggaa-aaaaaaagaaagaaagaacgaCGT--ATTTGGGTGTAAAGTTAAGAAAC---TGTGTTATG
i caeJap4.Scaffold18142 C 0 I 1438
e cb4.chrX              8962579 497 + 21540570 I

a score=1382.000000
s ce10.chrX             3835967 4 + 17718866 AAGA
s caeRem4.Crem_Contig0   904271 4 -  4500979 ATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896461 4 + 20921866 AAGA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2180114 4 +  4147112 ATGA
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I

a score=1949.000000
s ce10.chrX             3835971 11 + 17718866 AATCGACAAGT
s caeRem4.Crem_Contig0   904275 11 -  4500979 AATGGAGAAGT
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold630  5896468 11 + 20921866 AATCAACAAGT
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_0      2180118 42 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I

a score=-659.000000
s ce10.chrX             3835982 26 + 17718866 ATAGGTATAGACGCATGAGCGTGAAA
s caeSp111.Scaffold630  5896479 24 + 20921866 GAAGACAAGAAAATCTG-GTGTT-AA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2180118 42 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeRem4.Crem_Contig0   904286 47 -  4500979 I

a score=517.000000
s ce10.chrX             3836008 16 + 17718866 -----CCACTCTTTGCGAGGC
s caeSp111.Scaffold630  5896503 18 + 20921866 TCATGCGTTTCTTCGAGA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180160 13 +  4147112 -----CAATTCTTCGAGA---
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeRem4.Crem_Contig0   904286 47 -  4500979 I

a score=28280.000000
s ce10.chrX             3836024 91 + 17718866 GGCGAACGGCTTCATATGCTTCAATTCAC----TTAAAACTTGAACCC-CGAATTACAGTAATTACGCGACGATGCGAGAAAGTAAAACAACATAG
s caeRem4.Crem_Contig0   904333 94 -  4500979 GACGAACGTTTTCATATGCTTCGATAGATAAAACTGAA-CGTGAACCCTCGATTTACAGTAATCAAGCGATGAagc-agaaaacaaaacagCATAG
i caeRem4.Crem_Contig0  I 47 I 22
s caeSp111.Scaffold630  5896521 91 + 20921866 --CGAACGGCTTCGTATGCATCAGTAGGCAAAACTAAAACTTGAACC--CGATTTACTGTAATTGCGCGTTGGCGC-AGAAACCAAAACACCGTAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180173 91 +  4147112 --CGAACGGCTTCATATGCTTCGATAAACAAAACTGAAGCTTGAACC--CGATTTACTGTAATTGCGCGTTGGCGC-AGAAACCAAAACATCGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I

a score=-1579.000000
s ce10.chrX             3836115 51 + 17718866 TTCACTTTTCATATATTATATATATGTTACATTATTGCA-TATGGCTAACGA
s caeSp111.Scaffold630  5896612 21 + 20921866 TGC------------------------------ATGAAA-TTTGACAACTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180264 22 +  4147112 TTT------------------------------ATGAAAGTCTGACAATTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeRem4.Crem_Contig0   904427 22 -  4500979 I

a score=8305.000000
s ce10.chrX             3836166 82 + 17718866 AAATAAG-----GAACATATGTTGGAAAGATTGTTGAGAGCGAGGA------CGTGAATTCGGACAATACAGCTGTGTAATTGCAACTATTGC
s caeRem4.Crem_Contig0   904449 83 -  4500979 -AACTGAA----CCACAGATGTcgg--atatttttgaaaaaagaaacatcccAGG---TTTCGTCAATGCAGATGGTTAATTGCAACTATTAC
i caeRem4.Crem_Contig0  I 22 I 214
s caeSp111.Scaffold630  5896633 76 + 20921866 AAATAGAAATGCGAACAGATGTGGG--ATGTTTCTGA------GAA------AGG---TTTGGATAGGGTGCAATAATAATTGCAACTATTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180286 79 +  4147112 AAACAA------GAACAGGTGTCGG--ATGTTTTGGATACATGGAA------AGGGGTTTAGGGCAGTGCAGATGTTTAATTGCAACTATTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I

a score=612.000000
s ce10.chrX             3836248 10 + 17718866 T-----TACTGTAGC
s caeSp111.Scaffold630  5896709 15 + 20921866 CTGAAGTACTGTAGC
i caeSp111.Scaffold630  C 0 I 225
s caePb3.Scfld02_0      2180365 15 +  4147112 CAAGACTACTGTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeRem4.Crem_Contig0   904532 214 -  4500979 I

a score=91.000000
s ce10.chrX             3836258 1 + 17718866 A
s caePb3.Scfld02_0      2180380 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 262
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeSp111.Scaffold630  5896724 225 + 20921866 I
e caeRem4.Crem_Contig0   904532 214 -  4500979 I

a score=0.000000
s ce10.chrX             3836259 987 + 17718866  
e caePb3.Scfld02_0      2180381 262 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeSp111.Scaffold630  5896724 225 + 20921866 I
e caeRem4.Crem_Contig0   904532 214 -  4500979 I

a score=1072.000000
s ce10.chrX             3837246 23 + 17718866 CGCTGAGACATGAGCTATTGGAA
s caeRem4.Crem_Contig0   904746 23 -  4500979 CGCTGATAAATGATTTATTGCAG
i caeRem4.Crem_Contig0  I 214 C 0
e caePb3.Scfld02_0      2180381 262 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e cb4.chrX              8962579 497 + 21540570 I
e caeSp111.Scaffold630  5896724 225 + 20921866 I

a score=60.000000
s ce10.chrX             3837269 2 + 17718866 AT
s cb4.chrX              8963076 2 + 21540570 AC
i cb4.chrX              I 497 C 0
e caePb3.Scfld02_0      2180381 262 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e caeSp111.Scaffold630  5896724 225 + 20921866 I
e caeRem4.Crem_Contig0   904769 0 -  4500979 C

a score=300.000000
s ce10.chrX             3837271 1 + 17718866 G
s cb4.chrX              8963078 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5896949 1 + 20921866 G
i caeSp111.Scaffold630  I 225 C 0
e caePb3.Scfld02_0      2180381 262 +  4147112 I
e caeJap4.Scaffold18142   70377 1438 -   343467 I
e caeRem4.Crem_Contig0   904769 0 -  4500979 C

a score=781.000000
s ce10.chrX             3837272 28 + 17718866 --------------ATTAGCTGTGGAAATAATT----GTCATAGCC
s cb4.chrX              8963079 38 + 21540570 ATTAGCATTTGGAAAT----AATTGAGAAGAGT----GCGTTGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   904769 37 -  4500979 -----CTATTGCAAATCAGCAATGGAGATGACT----GTCATCCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896950 28 + 20921866 --------------ATTAGCAATAGAAAGCATT----GCCAGAACG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180643 32 +  4147112 --------------ATCAGCTATGGAAATGATTGCCAGCCAGAACg
i caePb3.Scfld02_0      I 262 C 0
e caeJap4.Scaffold18142   70377 1438 -   343467 I

a score=65766.000000
s ce10.chrX             3837300 121 + 17718866 -----AGACCCAAA-------------AAAA---AAACGAACGATC------------TTCTAATGACGGATCCGT-AAGTAAGCTAAGTGTGTGGATTATCTAG-------------------AAA---------AAGTGCGCAGGCATGTAGGGCGCTTGTTATTAGTTCGTGGTTGCTTT
s cb4.chrX              8963117 149 + 21540570 -----AGGAGGa---------------aaaa---aaGCGAACGATC----------AAAGCTGATGGAGGATTCGTGAAAGTAGC-AAAAGTGTAGATTATCTGGCAGAGTGGATGGTAGAGAAAAAACACACGAAAAGCGCGGAGGCATGTAGTGCATTTGTTATTAGTTCGTGGTTGCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   904806 134 -  4500979 -----AGGTG------------------AAA---AAACGAACGAT------------AGGCTAATGACAGATCCGC-AAGTTAGC-AAAAGTGTAGATTATCTCGCTGAG-Ggacg--------aaaaaaaacgaaaagcgCGGAGGCATGTAGGGCATTCGTTATTAGTTCGTGGTTGCTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5896978 150 + 20921866 -----AAGAAagaagggggggggggataaaa---aaattaacgacA--------GTGAGGCTAACGAGAGATCCGT-AAAGTAGC-AAAAGTGTAGATTATTCAGGG-------cg--------aaaaaacacgaaaagCGCGGAGGCATGTAGGGCATTTGTTATTAGTTCGTGGTTGCTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180675 146 +  4147112 -----gaggaaaaaacag---------aaaa---aagtgagcgAGAT-------GGGGGGCTAACGAAAGATCCGC-GAAGTAGC-AAAAGTGTAGATTATCTTGGAG---GGCCa--------aaaaaaCACGAGAAGCGCGGAGGCATGTAGGGCATTTGTTATTAGTTCGTGGTTGCTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   71815 150 -   343467 aaatcaagaaaa---------------aaaacgtaaacgAGCGACTGCGGCTAAGAGATGTTTAGTGCAGATCCGT-GAGTAAGC-AGTACTGtagatctcaaaaaaa----------------aaagtgaaagaaaaGTGCGGAGACATGTAGGGCATTTGTTATTATTTGATGGTTTCTTC
i caeJap4.Scaffold18142 I 1438 I 12

a score=524.000000
s ce10.chrX             3837421 40 + 17718866 CAATC-----GGAAGATGAGGTGAAGAAAGGGAGGGG-----GGGGGGGG
s cb4.chrX              8963266 46 + 21540570 GAATCG----GAAAAATCTGGGTGGTAAGTGAAGGGGGATAAAAGAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   904940 36 -  4500979 GAATTGGAC-GAAAAATCTGGGAGGTAGG-------------AGGAGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5897128 27 + 20921866 GAATCcgatagaaaaat-tggtga----------------------gGGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180821 37 +  4147112 GAATCCGAAAGAAAAATCTGgtgaaaggg-------------ggggggga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   71965 12 -   343467 I

a score=291628.000000
s ce10.chrX             3837461 653 + 17718866  
s cb4.chrX              8963312 638 + 21540570  
i cb4.chrX              C 0 I 1446
s caeRem4.Crem_Contig0   904976 607 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5897155 606 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2180858 595 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   71977 672 -   343467  
i caeJap4.Scaffold18142 I 12 C 0

a score=-15159.000000
s ce10.chrX             3838114  70 + 17718866 CCTAATTACAAAATAAAC--TTAAAATT--------GATTAAAAGTGCAACAGTTTGGAAATCTGGAT----------------------------TTTCGCAA-----------AAGC
s caeRem4.Crem_Contig0   905583  61 -  4500979 -----ATGCAAAATaaacaattgaaataattttt--gaatgagatcA------------AATTTGTAG----------------------------ATTAATAA-----------AAAC
i caeRem4.Crem_Contig0  C 0 I 106
s caeSp111.Scaffold630  5897761  58 + 20921866 -----aaggaaaataaacg----aaaaagtGTTTCCGATTAGGAATA-----------GGGTCTGCAG----------------------------ATTA--AA-----------GAAT
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2181453 101 +  4147112 -----ATGCAAAATAAAcgattcaaattatttttcccttTTAGATTA-----------AAATTTgcagataaaaaaaatgaatgagaatttCGACAATTA--AATCGTGAAATCGAAAT
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18142   72649  47 -   343467 --TCTaaacagaagaagaagaagaaat---------aaTTATAAATG-----------AAGTAACTAA----------------------------C----------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8963950 1446 + 21540570 I

a score=-3729.000000
s ce10.chrX             3838184 55 + 17718866 TAATTTCTTAACAGTT-------TGATCTCTGGTTGA-------GAACATCA--------TGATATAAAATGTAATT
s caeSp111.Scaffold630  5897828 34 + 20921866 ------------AGTT-------Tgatctttcattt------------------------tgatctCGAGTTTATTT
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2181572 54 +  4147112 TAA--GCTAAACAGTT-------TGATCTTTGATTTT-------ATGTTTCT-------CTGATACCGTAGGTAAAT
i caePb3.Scfld02_0      I 18 I 92
s caeJap4.Scaffold18142   72696 65 -   343467 -------TAAAAAGTTTTCATTCTGATCTCTAGtttttttATGCATACATTTATGCATACTAATACGGTAGt-----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8963950 1446 + 21540570 I
e caeRem4.Crem_Contig0   905644 106 -  4500979 I

a score=-7328.000000
s ce10.chrX             3838239 105 + 17718866 ATGAAAATT---TAATTCGTTAATATTTGTAAAGTCGGTTGAGGCATTTTCAGTAAAAAATAAGAAGATGTGATAATTAAGGCAGTGATTTTTAGCAATTCGACAAGC
s caeSp111.Scaffold630  5897862  65 + 20921866 AGATACAGTAGGAAACTC-TCAATTTTTGT------GCCTAACGTTTGCTCATT-----------------------------AGTGGTTTCCAGCATCTT-------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   72761  84 -   343467 ---------ttgaaattt-cagatttAGATCAAATTAGCAATGTCAAACtctaagaagaagaagagtgtGAACGTATAAA---AGTG---CTCGGTAAAC--------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2181626  92 +  4147112 I
e cb4.chrX              8963950 1446 + 21540570 I
e caeRem4.Crem_Contig0   905644 106 -  4500979 I

a score=-8737.000000
s ce10.chrX             3838344 52 + 17718866 CCCGAAATTGCCTGTTTTGAACTATTGCAATTGTATCGAAAAAAAATCGAAA---
s caeRem4.Crem_Contig0   905750 35 -  4500979 -CCCTATATGTGTGTTCTA---CATTGTTCCAG-------------TTGTAA---
i caeRem4.Crem_Contig0  I 106 C 0
s caeSp111.Scaffold630  5897927 36 + 20921866 -------CTGGTTACTCAAACTCATGAAaccag---------aaaattttaa---
i caeSp111.Scaffold630  C 0 I 2
s caeJap4.Scaffold18142   72845 38 -   343467 -----------------TGGAAGATTTTAATAAGGCTGATGAAAAAGTGggtgaa
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2181626 92 +  4147112 I
e cb4.chrX              8963950 1446 + 21540570 I

a score=-17448.000000
s ce10.chrX             3838396 63 + 17718866 AGATTCAAAAGATAAAAATGACATATCAAAAATTTTGTATcaaaattttttgagatcaatatt
s caeRem4.Crem_Contig0   905785 44 -  4500979 GTACTC-------------GGCTAACCAGAAACTTTAAGTCAGA------TGCCGTGAACTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5897965 15 + 20921866 -----------------------------------------agA-------GCCAGCAGCTGG
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2181718  2 +  4147112 -------------------------------------------------------------GG
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold18142   72883 61 -   343467 -aatttctgaaaaaatggtAGACAGATATAAACTTTGGAAGGCAGGTTCTTGAAGAAATATT-
i caeJap4.Scaffold18142 C 0 I 153
e cb4.chrX              8963950 1446 + 21540570 I

a score=-12639.000000
s ce10.chrX             3838459 133 + 17718866 tgccaaattgccaaaaactttga----aactcggcaattcccgaaaatgccaatt----------------accggcaattttaactacttaaagttactgtttttaattttggaaatt-ga----------atttggtgattg------------------gacaccaattctgttgctga
s caeRem4.Crem_Contig0   905829 141 -  4500979 TACCTA---GACGAAAACATTGG----CACTCATAGA-----AAACATGGAAATGCATGTAAACTGAGAAAACTAATACAATTCGAAACTTGATTTGAACGCATCTAAGTGTGGTAATT-GACATGTATCatatgtt-tgtttgtttttttttct---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5897980  85 + 20921866 TTTCAG---GCggaaaacatttc----aattc----------gAATATGGA----------------------------------------------AATGCATGTA-----GGCAATCAAAAGGAAGCCAAACATGATAATTG---------------------ACGAATTCT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2181720 152 +  4147112 TATCAA---GAAGTAAACATTTTGAGGAATTT------------ATATGGAAATG---------TGGGTAAGCCAACAAGAACGGAAACCTGATCTGAACCCATCTAAACTTGGTAATT-GACGAATTCCATTCGTCATGTTTGTTTTCACTCTCACTCCTGGAAACAAACTTCAGT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   72944 153 -   343467 I
e cb4.chrX              8963950 1446 + 21540570 I

a score=-3383.000000
s ce10.chrX             3838592 33 + 17718866 aaatcccaaaaactgttt-gcaattTGTATGTAT
s caeSp111.Scaffold630  5898065 19 + 20921866 --------------GAAT-GTCATCTGTTTGTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2181872 25 +  4147112 -------AAAAAGAGATT-GTGAACT-TTCAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   73097 30 -   343467 CTCTCCCAAAAAGTGTTTCCTCATatgttc----
i caeJap4.Scaffold18142 I 153 C 0
e cb4.chrX              8963950 1446 + 21540570 I
e caeRem4.Crem_Contig0   905970  0 -  4500979 C

a score=-16569.000000
s ce10.chrX             3838625 53 + 17718866 TCAAGCACTTAGATG--------------AAAACTTGAACACATAAAAAG-AAAACTGAACTTTGAAA
s cb4.chrX              8965396 53 + 21540570 TTAAGAATCCTGGT---------------GAAAATGGCTAACAcataagctgaaaatgaagttttgta
i cb4.chrX              I 1446 C 0
s caeRem4.Crem_Contig0   905970 44 -  4500979 tcaagaa----------------------gAACTTGAATACCGGAAAGTGGGACAAT--ACTTTAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5898084 45 + 20921866 TCACGTTCTTTAAC---------------AAACATTACACTCG--------AAAACTTGAACTTTCTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2181897 41 +  4147112 TAAAATGTTATGG----------------AAACATTGCTc-----------atatcttcatcttcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   73127 68 -   343467 tctatttttttcgttCTTCCATGATAGGCAGGGattgaaaacaagaaaaaaaggacaGAGACGTAAAA
i caeJap4.Scaffold18142 C 0 I 16

a score=-10283.000000
s ce10.chrX             3838678 66 + 17718866 TGTCTACTTTTTCATTTCGTGATGA---------------TTCTC---------------------------------AATTGAAAGTCTATA--TGTTCTTAGAATTCCCTGC-------AC
s cb4.chrX              8965449 82 + 21540570 tatcttattacTGAATATATGTAATGCAAAGTGACTTTTTCTTTC-------------------------------------TA-AGTCTATA--TGTtctctgaact-tttttctcaaatcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   906014 63 -  4500979 GGAACTTTTCCCCATCACACTTTGTAC-------------CTTTC-------------------------------------TACAGTATATAAGTGTTCTTCGAACG-CATGC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5898129 98 + 20921866 TACTTTAATGTTTTCTgcacttcat---------------ttttctcatggTTTTTATTTCCAATTAGTGGTTGAAGAGATTCAAAATCTATA--TGTTCTTCGAGCG-ATTCC-------TC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2181938 61 +  4147112 tcC------ACTTCCTacactttgt---------------ttttc-----------------------------agacaatccAAAGTCTGCG--TGTTCTTCGAACA---TCT-------TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   73195 16 -   343467 I

a score=-3222.000000
s ce10.chrX             3838744 53 + 17718866 GCACGCAGTGTAA---CTTCTCTAATGACGACG----------------ACGACCAATAAAAAG--------------AAGAAGAC------
s cb4.chrX              8965531 38 + 21540570 tAAACAAGTGTAA---TTTTCCTAATGACGCCG-----------------------ATAAAAAG----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   906077 31 -  4500979 ------AGTGTAA---TTTCTACAATGACGATG------------------------TAAAAAG----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5898227 45 + 20921866 TCACGCAGTGtaacttttttgtgaatgacgtc-------------------------caaaaaa-------------gaagaa---------
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2181999 48 +  4147112 TCAAGCTGTGTAAC--TTCTGCTAATGACGAC-------------------------CaaaaaaaGGCC--------GAAGAA---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   73211 89 -   343467 ACGAGCGGTGTAATTTGTTCCCTAATGACGCCCTAAGAGGGGAAAATGGAagatgaatgaaaaaaaaacgaatgaaaaaagaa---aaaagg
i caeJap4.Scaffold18142 I 16 C 0

a score=-13052.000000
s ce10.chrX             3838797 20 + 17718866 GCAAAAA---------------GGAAATG---TTGAGA----------------------------------------
s cb4.chrX              8965569  6 + 21540570 --------------------------------TGGAGG----------------------------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   906108  2 -  4500979 ------------------------------------GA----------------------------------------
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0      2182047  2 +  4147112 ------------------------------------GC----------------------------------------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142   73300 78 -   343467 gcaaaaaaaccgaccagcgaatggaaatgaactaaagaaaaaagaaaagcagcATTCTCTCTGTTCGTTTGTAAAAGT
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5898272  9 + 20921866 I

a score=213954.000000
s ce10.chrX             3838817 793 + 17718866  
s cb4.chrX              8965587 871 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   906122 754 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5898281 779 + 20921866  
i caeSp111.Scaffold630  I 9 I 1086
s caePb3.Scfld02_0      2182054 761 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   73378 794 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-296.000000
s ce10.chrX             3839610 147 + 17718866 AG-AAATCA--CAAAGTGTTTGTTCCAA----TTTCAAAAAC--AATGACACATTTTTTTTTCTAGTTG-GAACATTGC-AAATAGAACTAGAATGAGATGAT--------------------------------------TTGAGGGTCTAGTTACATT-------------TTGAAGGGGGTTTGAACTGAGAAATGAAACATTTAA
s cb4.chrX              8966458 182 + 21540570 GGAAAAGCA--CAAAGTGtttgttccaaattttttcaaaacccaaatgacaca----tttttctagtttcgagcactgg-aga-------aaattgaaacgaA----AGTGGTAGAGgggacatttgaaaattggccaaggttgaaattttaaaagaataaTTGAACACAACTGTAAGAGAG--------TCAAAGATGGat-attgaa
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   906876 109 -  4500979 GG-AAAGCA--CAAAGTGTTTGTTCCAA----TTTCAAAAGC--AATGACACA-----TTTTCTAGTTT-GAGAACTGAcagg-------aaaatgaaacaaa--------------------------------------ttgaaa--------------------------gtgagggaa--------agaaagttgg------gaa
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2182815 134 +  4147112 ------------aaagtgtttgttccaa----ttttaaaACC--GATGACACA-----TTTTCTAGTTT-GAGCAccgg-aga-------aaaa-gaaacgag-------------ggGAATGTTGCAAAATT--------TTGACACCCTTCGAATTTA-------------TTTCGTGAG--------CAGAAGTTGGCTCATTCAA
i caePb3.Scfld02_0      C 0 I 75
s caeJap4.Scaffold18142   74172 145 -   343467 GGAAAAGCACGCAACGTGTTTGTTCCGA----TTCGATTGCA--AGTGACG-------TTTTCTGGTTT-GAA-actac-aac-------aaaaaacaacaaaagtcAGTGATCTGATGGATGACAGACAGGGCGGCGGGGATGcgat-------------------------tctcgaaaa--------aaaaggtttga--------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=-1476.000000
s ce10.chrX             3839757 19 + 17718866 ATT--TTTCAAACTCTTTAAA
s cb4.chrX              8966648 14 + 21540570 at-------aatatTCCAGAA
i cb4.chrX              I 8 C 0
s caeJap4.Scaffold18142   74317 19 -   343467 --gAATTGAAAACTTACCAAA
i caeJap4.Scaffold18142 C 0 I 262
e caePb3.Scfld02_0      2182949 75 +  4147112 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I
e caeRem4.Crem_Contig0   906985  3 -  4500979 I

a score=-1744.000000
s ce10.chrX             3839776 16 + 17718866 TTTGTAA-----------AAAAAAATA-------------
s cb4.chrX              8966662 40 + 21540570 GTTGAAACTAATGTTGTTacaaaattagtgaaaaaaagga
i cb4.chrX              C 0 I 105
s caeRem4.Crem_Contig0   906988 16 -  4500979 ------------------acaaaaacaaagaaca------
i caeRem4.Crem_Contig0  I 3 C 0
e caePb3.Scfld02_0      2182949 75 +  4147112 I
e caeJap4.Scaffold18142   74336 262 -   343467 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=-1433.000000
s ce10.chrX             3839792 48 + 17718866 GACGTTCTTCAATATTTTTAGCTTCGGTAATACCCAAATTTTCCAAAA
s caeRem4.Crem_Contig0   907004 10 -  4500979 g----------------------tgggtaaaa----------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2182949 75 +  4147112 I
e caeJap4.Scaffold18142   74336 262 -   343467 I
e cb4.chrX              8966702 105 + 21540570 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=1427.000000
s ce10.chrX             3839840 37 + 17718866 TTTCGAGCATTGCTGCAGGTTTAAACACTTATAATTC
s caeRem4.Crem_Contig0   907014 29 -  4500979 -----agtatttctgaaaagtagAACAT---TAATtc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2183024 35 +  4147112 ttcgaaacattttc--agatttgaacaGACATAATTT
i caePb3.Scfld02_0      I 75 C 0
e caeJap4.Scaffold18142   74336 262 -   343467 I
e cb4.chrX              8966702 105 + 21540570 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=-39984.000000
s ce10.chrX             3839877 287 + 17718866 CGATAAAAATGA-----------ATACAATTTAA-----------------------GAATAATATAAAGTTTG-TAAAC---ATTTTTTTTGGCGAACTTCCGAAATTATTATAAGTAAGAACTGAGTTTTCCC------TCATTTT-------------------------TTACTTCATATAAAAA------TTCCaattttttattgaaata-------------------ttaaaaaatatatGCGTGGCTCAAAAGAGAGCATTTTAAAAGTATA-------ATTGGTTTTTTAAAGCAAAGCCAGCAAGTTGCCACAGCTTCGCAAAGT-ACAAAAAATTCGATTTATCTTT-------------------------------TGAGAAGCGTTCAGAGTGGGAAATTTAAAG-
s cb4.chrX              8966807 367 + 21540570 CGATAACAAGAGTCTGTGAACGGATAAAATCTTTGGCATAATGTTACCTACCGATATGCAGttaaaatctttcaaaaaatcagattatTGTTGTC-CAGTTGTGACTGTGGGGGTAGTTTGAATATGGTATTTGTGTTTGACTATTTTGTACTACGGTATTTACGACAGGCTATTGTTCATTACGGTAGTGACGATTGCAAGTTTTTATTACGGTATTCGCGGCtggcttttttcgaaaacaataaGTCAATTGATTG---------------AAAGTATTTGTTGCTAATGGTG---------AAAACCattgaatt------------tgaagt-ttaaaattaCCGTAACACCTGTATTGGAAGAGTCTCTTGATATCAAGGCGTTCCGGAGATACATTGGA----------------
i cb4.chrX              I 105 C 0
s caeRem4.Crem_Contig0   907043 171 -  4500979 -----------------------atagaattttc-----------------------------------------aaaacttgttcGCTCTTGTCACAGACGTG-------------------------------------Ttatttt-----------------------------------------------tagtaaatttttgaaaaa----------------------aaagataataagGGAGTAGAATA------------------------------ATTAGTA---------TAACACAGTAATTTGC----------TGaagtaataaaaaaattgtggtCTTTGC----------------------------TTCTGTGAATATAtcaga--caaaaatttcaag-
i caeRem4.Crem_Contig0  C 0 I 159
s caePb3.Scfld02_0      2183059 216 +  4147112 --ATTAAA---------------TTGAAATCTTC----------------------CGAAGACCATATACTTGA-CATacctaattatttt--ttataagtGTG---TTctagaaaactggaat-----------------tcatGCT------------CAAGAACAGAAGCTTGATCAAAGC-----------CAGGAAGTTATC----------------------------GAAGAAAATATATACACAGGACA-----------TGTAAAATTATT-------ATGATAG---------AAGACCAGAAGACT--------------AGGC---GAAAAACCTGATGtaattgt-----------------------------------------tcaga-------attttaaaT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   74336 262 -   343467 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=-20027.000000
s ce10.chrX             3840164 221 + 17718866 -AAATTAGAACATTTTGCTTCACAATCTTGT-------GAAGG-----------AG---------------------------------------------------------------------TTGTAAATTGGCGT--TTTTTCTAGATATGTCAGTTAGT-------TTTCAATATCCTTATAAACCTCGCAGCATAGGGA---------------CACACTTCGACTAG----------CAAAAAATTGATCA----TTGAGCTCGCGTGTGCTTTCTAAGCCAC------TATGCGTGCA--------------TCACAAACTAACTGTATTGCATAAATTTTTCAGTGTACAAAAAATAA---------------------
s cb4.chrX              8967174 216 + 21540570 GCACTAGAAGGG--------CACGCTCTTCC-------GATAG-----------AGGTTATGTCGAATT--------------------------------------------------------TTATGGATAATATT--ATATTC-ACATCTTTCTCTACct-------tttaaatatt---ttgaacttct--gtTTATAAA---------------TATTATCC---CTGTT--------CGAGAATGTCGTAG------------TCAACCGTTTTTAAAATCACCTTCTGTATATGCGGGAATTCTAAACACGTACTtaa--------taatttctaaaatcttgg--------aaaatgc---------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2183275 362 +  4147112 -GATTTAGAACA--------CACAACCTTCCTTGGTCAGATATGCGGACTGGTCAGATGAGCTCGAAATCAGCACCTATTCATCGCGTTTATTCAAGCTCTGAATTTCTGcttcagctcaaaaacttgtaaacaaaaataaacaatc-atATCTAATCTTAGTTGGAAAAACTTAAATAttaaatggaaattt----tttaaaaactctcGAAAAAGATGTATTATTTG--CAGTTTCGGGCcctgagaattttctgaagccTTGCTCGCTCAAGTGACTT----ATCACATTat-tatcaagaaaaattattgctACCCTTTTTAGCAAACCGTACTGTCTAAACTATTGAGCT-----AGAATAAAACCGAATCTGAAGCTAATCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   74336 262 -   343467 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I
e caeRem4.Crem_Contig0   907214 159 -  4500979 I

a score=-10877.000000
s ce10.chrX             3840385 81 + 17718866 TAATTTT------TTGGACAGTATGAAAGTTTCAGTTATTTATCTAAAAAAATGGCTCAACCCCATTTTGAA----AATTC---ATTATGTATC----
s cb4.chrX              8967390 76 + 21540570 taattttgattatttgaac---tcgaaaactc-------aaaactcaATAATTG--ATAATGACAATACGAG----AAAGc---tttaatgaaaa---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   907373 52 -  4500979 TAACCTT-------------------------------------TCAAATAATG--CGAATCCCATTTAGAA----AAACCTAGTTTAGTCAATT---
i caeRem4.Crem_Contig0  I 159 C 0
s caePb3.Scfld02_0      2183637 89 +  4147112 -AACGTTTTCCAACTATAC---GTGAAAGCTTGCTTATAATTACCTAATGACTG--TCTACACCTTCAAGTATCTCAAATG---TTGAATAATGTTGC
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18142   74336 262 -   343467 I
e caeSp111.Scaffold630  5899060 1086 + 20921866 I

a score=-1466.000000
s ce10.chrX             3840466 269 + 17718866 ATAAAAATTC----CATACAGAGAAAATTCGGCAAAACATT-------GAAACTTACTGG-----AAATTG--------------------------------TTGTCGAAA------ACGG-CGGAACACAGAACACAACAATA---CTGAAAAGT--TTTACTG----TCCATATTGTCA--GTTTTCAA----AAACC----GCCCTCTTTCGGTTCGTGCAATAACAGCTCTCATAAAATGAACAGTTTCAAGGCTTGTCCTCCGG--------TGAACAAAGATCAAATGAGAAAAGTT----T---------------CGTGAGATTCTTCTCTT-TCTCAC-CTGG-GTGGTT----------TTATTTTTCTCAA
s cb4.chrX              8967466 305 + 21540570 tttaaattgg----aATGC-TTGA--------------AAC-------AAACCTTACTTgcttgaaatttaaaaaaatgttcaaaaaatccagaaactcaTTGTATCCTGTGTCTTCTAAAACCGGAACACAAAGCACAACTACCGGTGGCAATGAT--TTTATAG--CTTTCAAAgtgttgtattttttga----aaaca----cccTCAC-----ATCTTGCAATAACAACTCTCATAAAATGA------ACAG----TTTCAACTGGCCGCTACACGAACAAAGATCG---CaaaaaaaaG----TCACCAGGAAGCTCAGCGTGAGAACTCTTGTTT-T----CTCAAGTGTGGcc-------ttctga------aaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   907425 277 -  4500979 TTACAATTTG----AATAAGTTGA--------------AGTTCATTTAAAGTCTTACCTGGTT--CATTTGAATAAACATCCGGCAAATCC------------TATCTTGAA------ACAGTCGTAACACAAAGCACAACAATACG-AGAAAAGGT--TTTACAGTCCATTctgatcg-----tttttcaa----aaaccatttttttttc-----tttttgcaataACATCTCTCATAAAACGAACACTTACAG----TTTCGAACGG--------TGAACAaagatca---ggaaaaaatt----T---------------CGTGAGATTTCGCA---------CTCCAG-GTGGCC-------AGCTTATTTATCACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5900146 268 + 20921866 --ATAACCAG--TCAATAC-ATGAGAGatcaagaaaataat-------tgaactCACCCA-----GAGCGGA-------------AAATCG------------TAAATGAAA------GTGATCGGAACACAAACCACAAAAACG---AACTGAAACTGTTTACAG----CCCACGGTGTTGtcgtttttca--agaaacc----a-----T-----CTTTTGCAATAACAGCTCTCATAAAATGAAcagtttcag----ttttgaaaag--------tgaacaAAGATCG---CGAAAAATGTCA--T---------------CGTGAGAAATGTTCGTTCTTTCACACCGG-GTGGCTT------TTCTtactcat-----
i caeSp111.Scaffold630  I 1086 C 0
s caePb3.Scfld02_0      2183728 264 +  4147112 --AAAACCAAATTCGATAC-GGGA--------------AAT-------TGAACTCACTCG-----GAATTG---------------GATC----------------ATAAAA------CTGATCGGAAT-CAAAACACGACAATAC--AACTGAAAC--TTTATAG----TTCA---TGTTGCCAGTTTTGATCATGATCC----GCCCTCC-----CTTTTGCAATAATAACAATCATAAAATGAACAGTTTCAA----TTGTCAAAAG--------TGAACAAAGatcg---gaaaagaaggaagtt---------------cGTGAGAAATTTCTGGT-TTTGACTCCCG-ATGGCTTGGTAACTGCTTATTTGTCACAA
i caePb3.Scfld02_0      I 2 I 13
e caeJap4.Scaffold18142   74336 262 -   343467 I

a score=-2959.000000
s ce10.chrX             3840735 24 + 17718866 ----CACCACGTCCTTTTC--CTCCATATT
s cb4.chrX              8967771 18 + 21540570 ----tctcaaaatcttttc--TTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   907702 16 -  4500979 ----TCGcataatattt----ttc------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5900414 24 + 20921866 tatttttcacatttGGTCCAATTC------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2183992 13 +  4147112 I
e caeJap4.Scaffold18142   74336 262 -   343467 I

a score=23488.000000
s ce10.chrX             3840759 119 + 17718866 TTCTGATC-TGATATGCGTGATGTATC------CGTTTTCCAAAACAGAACAACAGC-------CAGTGCCAAACAACAAAAACA---------------AAATGAGTGCGAGCGCTTTG-----AAATGAGAAGAGAAATTTTACTGATTGC
s cb4.chrX              8967789 136 + 21540570 TTCTGATCGCGACATGCGTGATGTATTtgag--aaaatcttaaaaaaggaggaaaacaAAGT--CACTGgcaaacaacaacaacatgGAAGTTATTGAGTAAACAA----CACTGTtgtg-----ggaaa-aatgaaaagctttactta---a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   907718 116 -  4500979 ttctgatt-tgtTATGCGTGATGTCTTTCAG-----TTCTTAACC----AGAACAACAAAGTGCCGGtggtcaaaaacaaaaac----------------aaatga----gaaTGTTATG-----Ggaaattatgata--ttttaCTGATCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5900438 115 + 20921866 TTCTGATC-TGATATGCGTGATG----------TATTCCTTATAACAGAACAACAACTAAGTGGCAACGgcaaacaacaaaaac----------------aaaaaa----gaatgttttt-----cgaaacggAAATA--CTTTACTGATTGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2184005 133 +  4147112 TTCTGATC-TGATATGCGTGATGTATCCGATTCTATCCCTaaaaacagaacaacaactaaatgccaccggcaaacaacaaaaataag-------------aaaaaa----agatgtttttgaaagaaaaatgaaatta--gtttACTGATCGT
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold18142   74336 262 -   343467 I

a score=100927.000000
s ce10.chrX             3840878 262 + 17718866 ATTCATGGGGAACAACTTCTAAATAAAATT-------CAAAATAT--TTGATGTGAAATA----TAATGAAGAAAAAAATTGTGAAAG---------AAAAGTTAAA-----------TTTAATCGGTGAATTTGAACTTCAAATCATGGGTCTCTTGTGGAAACTCCAACTCCAAATTGAGAATTCCAAAGTCATACACCTTTCTTGCTTTGATTCCGAGTGTTACGTAATCTTCTGGAAGACGGACACCAATTCGTTTGTAGCCGTACTATAAAAATAATTG------------ATTTTT------GTTTC-
s cb4.chrX              8967925 232 + 21540570 a---------aata------aaacgaattc-------tgaattct----------------------------gaaaaaattcaagag---------gGAAACTGAAG-------AATTTTAATCAGCAAATGTGAATTTAGTATCGTGAGTCTCTCCTGGAAACTCCAATTCGAGATTGAGTTTTCCGAAATCGTACACCTTTCTGGCCTTGGTACCAAGTGTCACATAGTCTTCTGGTAGACGGACTCCAATCCGTTTGTAGCCTTGCTGAAAACAAATGGA---------GTTGTTTTG------GTTTC-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   907834 233 -  4500979 A---------GACA------AGACAATATT-------TGAAATGT---------------------------------AATTCTATAG------------AACCAAAA-------TTATTTAATCAGcgaattgaaatttgaggtCGTGGGTTTCTCCTGGGAACTCCAATTCCAGATTGAGTTTTCCAAAGTCATAGACCTTTCTGGCTTTCGTTCCGAGTGTCACATAATCTTCAGGAAGACGGACTCCAATTCTTTTGTATCCAtactaaaagaaaaataattatatttcaTTGATTGT------ATCTC-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5900553 223 + 20921866 C---------GACC------AAagtgt-tt-------gaaaattt----------------------------gataaaacgTGAGGG-----------AAATTAGAA-------CAGATTAGTccttaaattgaaatttaagGTCGTGGGCTTGACCAGGGAATTCCAGCTCCAAGTTCAGTTTTCCGAAATCATACACTTTTCTGGCTTTGGTTCCAAGCGTCACATAATCCTCTGGAAGACGGACTCCAATTCGTTTGTATCCatactgaaaatatgaata---------------cgG------ATTTG-
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2184138 226 +  4147112 CTCC----GAGAAA------GAAATCTATT-------GCAAATTC----------------------------GATTAAAGTCTGATG-----------AAATTAAAA-------CAGTTTAGTCCTTGAATTCAAACTTGATGTCGTGAGTTTGCCCTGGGAAATCCAATTCCAAGTTGAGTTTTCCGAAGTCGTACACCTTTCTGGCTTTGGTTCCGAGTGTCACATAATCCTCTGGAAGACGGATTCCAATTCTTTTGTAGCCatactgaaaatataaata------------------------atttg-
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18142   74598 289 -   343467 -------ATTGACG------aggaaaaattacaacaagGAAATGCAAATCATatgattcatttttcattattcagtaaaatgcagacaaacaagtacaaaaatcaggaGATTTGGTAAATCAATCAGCGAACTTAAATTTGACATCGTGGATCTCTCCTGGGTACTCCAACTCCAAGTTCACCTTTCCAAAATCGTAAACTTTTCTGGCTTTGACTCCGATAGTCACATAATCTTCTGGCAAACGGATTCCAATTCTTTTGTATCCATACTTTAAATTGTATTA------------AACTTGAAGAAAGttttt
i caeJap4.Scaffold18142 I 262 C 0

a score=-2041.000000
s ce10.chrX             3841140 10 + 17718866 GTAAGTGCTG--
s cb4.chrX              8968158  8 + 21540570 --atcagtta--
i cb4.chrX              I 1 I 3
s caeRem4.Crem_Contig0   908068  8 -  4500979 --GTCTGCTA--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5900779 10 + 20921866 GAATTTGCTG--
i caeSp111.Scaffold630  I 3 I 2
s caeJap4.Scaffold18142   74887  5 -   343467 -------ttGAG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2184364 20 +  4147112 I

a score=77451.000000
s ce10.chrX             3841150 100 + 17718866 GTCTTT-GACTTACATTGGATGTTTGCTTATTGTCCATTCCGCAGTTGTGATGAATTGTGACATATGGCTGGATATCGGTTTTGGTACGTGGGAATCTGAA
s cb4.chrX              8968169 100 + 21540570 atttta-aacatacATTCGACGTTTCTTTGTTGTTCATATTGCAGTTATGATGGATGGTAACGTATGGTTGGATTTCTGTCTTGGTACGGGGGAATCTAGA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   908076  89 -  4500979 ------------ACGTTCGATGTCTCCTTGTTGTCCATGTTGCAGTTATGGTGAATGGTAACGTATGGTTGAATTTCTGTCTTGGTACGTGGGAATCTGAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5900791 101 + 20921866 ATCTAATATCAGACATTGGAAGTTGCTTTCTCATCCATATCGCAGTTGTGGTGGATGGTGACGTATGGTTGAATATCAGTCTTGGTTCTTGGGAATCTAAA
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2184384 100 +  4147112 atataa-aactGACATTGGAAGTCTGTTTGTCATCCATACCACAGTTATGATGGATAGTGACGTATGGCTGAATCTCAGTTTTGGTGCGTGggaatctgaa
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18142   74892  97 -   343467 ---TTA-AACTCACGTTGGAAGCTTGCTTGTCATCCATTCCACAGCTGTGGTGGATAGTTGCGTATGGCTGAATTTCCGTCTTGGTTCTTGGAAAtcttaa
i caeJap4.Scaffold18142 C 0 C 0

a score=910.000000
s ce10.chrX             3841250 1 + 17718866 A
s cb4.chrX              8968269 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5900892 1 + 20921866 A
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2184484 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 47
s caeJap4.Scaffold18142   74989 1 -   343467 a
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   908165 5 -  4500979 I

a score=-1165.000000
s ce10.chrX             3841251 7 + 17718866 -GTTAAAC
s cb4.chrX              8968270 7 + 21540570 -GTGCATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5900900 7 + 20921866 -GTTAATG
i caeSp111.Scaffold630  I 7 C 0
s caeJap4.Scaffold18142   74990 7 -   343467 aataaac-
i caeJap4.Scaffold18142 C 0 I 47
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeRem4.Crem_Contig0   908165 5 -  4500979 I

a score=-473.000000
s ce10.chrX             3841258 11 + 17718866 TTATAAAAACA
s cb4.chrX              8968277 11 + 21540570 TTTTAAGAGTA
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold630  5900907  6 + 20921866 CATTAA-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeJap4.Scaffold18142   74997 47 -   343467 I
e caeRem4.Crem_Contig0   908165  5 -  4500979 I

a score=636.000000
s ce10.chrX             3841269 16 + 17718866 AAATTTTAATCTTAAT
s caeSp111.Scaffold630  5900913 16 + 20921866 TACTGTTCATCTTAAT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeJap4.Scaffold18142   74997 47 -   343467 I
e cb4.chrX              8968288  9 + 21540570 I
e caeRem4.Crem_Contig0   908165  5 -  4500979 I

a score=0.000000
s ce10.chrX             3841285 760 + 17718866  
e caePb3.Scfld02_0      2184485  47 +  4147112 I
e caeJap4.Scaffold18142   74997  47 -   343467 I
e cb4.chrX              8968288   9 + 21540570 I
e caeSp111.Scaffold630  5900929   0 + 20921866 C
e caeRem4.Crem_Contig0   908165   5 -  4500979 I

a score=407.000000
s ce10.chrX             3842045 17 + 17718866 AATAACCTTTTCTCAGC
s caeRem4.Crem_Contig0   908170 17 -  4500979 AAGAACATTATACCAGG
i caeRem4.Crem_Contig0  I 5 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeJap4.Scaffold18142   74997 47 -   343467 I
e cb4.chrX              8968288  9 + 21540570 I
e caeSp111.Scaffold630  5900929  0 + 20921866 C

a score=-951.000000
s ce10.chrX             3842062 1 + 17718866 A-
s caeRem4.Crem_Contig0   908187 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5900929 1 + 20921866 G-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeJap4.Scaffold18142   74997 47 -   343467 I
e cb4.chrX              8968288 9 + 21540570 I

a score=450.000000
s ce10.chrX             3842063 2 + 17718866 AA
s cb4.chrX              8968297 2 + 21540570 AA
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   908193 2 -  4500979 TA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5900930 2 + 20921866 AA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I
e caeJap4.Scaffold18142   74997 47 -   343467 I

a score=-169.000000
s ce10.chrX             3842065 2 + 17718866 AA
s cb4.chrX              8968299 2 + 21540570 GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   908195 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5900932 2 + 20921866 GA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142   75044 2 -   343467 AA
i caeJap4.Scaffold18142 I 47 C 0
e caePb3.Scfld02_0      2184485 47 +  4147112 I

a score=75745.000000
s ce10.chrX             3842067 85 + 17718866 ATAAC-AAACCTCGCGGTACCTCCTTCAACTTGGAACATTCCCGTAATGTATGTGTTCTTTACGTCGAGTAGCTCGGCGAGATCTG
s cb4.chrX              8968301 85 + 21540570 ATATC-GTACCTGGAGGTATCTCCTTCCACTTGGAACATTCCAGTGATATAGGTATTTTTTACATCGAGCAGTTCAGCGATGTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   908197 85 -  4500979 ATTCC-ATACCTGGAAGTATCTCCTTCAACGTGGAACATTCCGGTGATGAAAGTGTTTTTCACATCAAGAAGATCAGCTATGTCta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5900934 80 + 20921866 ------ATACCTGGAAGTGTCTCCTTCTACTTGGAACATTCCGGTGATATAGGTGTTTTTGACATCGAGTAGGTCAGCGAGATCTG
i caeSp111.Scaffold630  C 0 I 35
s caePb3.Scfld02_0      2184532 86 +  4147112 ATAACTAGACCTAGCAGTGTCTCCTTCAACTTGGAACATTCCAGTGATGTAGGTATTTTTCACATCCAACAAGTCAGCAATAtctg
i caePb3.Scfld02_0      I 47 C 0
s caeJap4.Scaffold18142   75046 85 -   343467 ATAAC-TAACCTTGCGGTGTTTCCTTCAACTTGGAACATTCCAGTGATGTAGGTGTTTTTCACATCAAGAAGATCGGCGATATCTG
i caeJap4.Scaffold18142 C 0 C 0

a score=-9309.000000
s ce10.chrX             3842152 35 + 17718866 ACATGATTATGGTCTTGCTCAAAACTT-GATACCTT-------------
s cb4.chrX              8968386 27 + 21540570 --------AAACAATAGACTataaaat-gtcagaaa-------------
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   908282 27 -  4500979 --------aaaataatgttgaaaAACT-AACAGAAG-------------
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0      2184618 18 +  4147112 -----------------tttgaaaatc-attattcT-------------
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18142   75131 45 -   343467 ----AAagagaaaattattaaaaaaatagataaactttttttaaatgtt
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5901014 35 + 20921866 I

a score=84838.000000
s ce10.chrX             3842187 118 + 17718866 ACTTACCATCTGCTGCATTTGGTTGAAATGTTCTGAAAAGTCGGATCTTGGCTCCTTCGAAAGGCTTCTTTCCACAATACAGTTGTCCTTTGACTGCCATGGTTCtaaaaat----ataaat
s cb4.chrX              8968421 122 + 21540570 aattactATCAGCGGCGTTTGGTTGGTAGACACGGAAAAGTCGAACTTTAGCGCCTTCAAATGGTTTTCTTCCGCAGAAGAGTTGCCCTTTGATGGACATCGACCTGAAAAAGTCGAATAAC
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   908317 118 -  4500979 CAATACCATCTGCAGAGTTTGGTTGGTACACTCTGAAAAGGCGAATTTTGGCTCCTTCGAATGTCTTTTTTCCACAGAAAAGCTGTCCTTTGACTGCCattgatctgaaaac----aataac
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  5901049 116 + 20921866 GCTAACCATCTGAAGCACTTGGTTGATAAACACGGAAAAGTCGAATCTTGGCTCCCTCAAATGGCTTTCTACCACAGAAAAGTTGTCCTTTGATCGACATCGATCTGAATAT------TAAT
i caeSp111.Scaffold630  I 35 I 23
s caePb3.Scfld02_0      2184656 112 +  4147112 ACGTACCGTCAGCAGCATTAGATTGGAACACTCTGAAAAGACGAATCTTGGCTCCTTCAAACGGTTTCTTTCCACAGAAAAGTTGTCCTTTGATTGAcatcgatctgaaaat----------
i caePb3.Scfld02_0      I 20 I 2
s caeJap4.Scaffold18142   75176 118 -   343467 accCACCATCAACGGCATTGGGCTGATAAACTCTGAAGAGCCTGATTTTGGCTCCTTCAAATGGAGTCTTTCCGCAAAAAAGTTGTCCCTTGATGGACATTGACCTACAaga----ttaaat
i caeJap4.Scaffold18142 C 0 C 0

a score=-7284.000000
s ce10.chrX             3842305 24 + 17718866 ------tgatttttacaaaa--------ttgaaaatta
s cb4.chrX              8968543 29 + 21540570 ------TAAAACTTACCCAgacactt--ttgaaaatt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   908435 31 -  4500979 ------tCATCATCAAATGAACACTTAGTTTAATATT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2184770 22 +  4147112 ------ttatttgcAAATATCCAATT--TT--------
i caePb3.Scfld02_0      I 2 I 5
s caeJap4.Scaffold18142   75294 24 -   343467 aatttttcatacCTATCCAAATAA--------------
i caeJap4.Scaffold18142 C 0 I 1
e caeSp111.Scaffold630  5901165 23 + 20921866 I

a score=31961.000000
s ce10.chrX             3842329 129 + 17718866 aattta---CCTGTTGGCAATGTTAGTTGG--GACATCAAGATCCGCTCCAGCAGAAACGTATGAAATTGGTAAAAGAAGAGCGGCGATAAATATGAAAATCATG---------------CTGAAATGTG-ATAATTAAACGTATTTCTC
s cb4.chrX              8968572 135 + 21540570 --ttggaatcccttcgccagtttcagccgatttACATCAGTTTCAGTAACAA----AAATTGTGGTTTTAGtgcaaaaaaggtttttaaaGGCGATTATCCTAAATTCTAGGACG--TTTCAGA-------TTATAAAAACTGTTGTGTT
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   908466 140 -  4500979 --TTTA---CCTGTTGGCTACATTGGTTGG--TACATCCAAATCAGCACCAGCTTCAACTTGAGACAATGGTAAGAGAAGAGCTAATAAGAACAGGTATATCATGGCTAGTAATG--TTCCTGAAATGCG-TGATATAAACGAAAGTGTT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5901188 143 + 20921866 AACTTA---CCTGTTGGCAACATTAGTTGG--GACATCGAGATCTGCTCCGGCAGAAACTTGAGAAATAGGAAGAAGTAGAGCTAATAGAAACAGGTAAATCATGGTTGAAGAGA--AACCTGAAATGAGTTGAGCTGAGCGAAGTTGTT
i caeSp111.Scaffold630  I 23 I 5
s caePb3.Scfld02_0      2184797 142 +  4147112 AACTTA---CCTGTTGGCAACATTAGATGG--GACATCCAGATCAGCACCAGCCGAAACTTGGAAAATAGGTAAAATGAGAGCTAATAGAAACAGGTAAATCATGGTTGGCGATG--TGCCTGAAATGCG-TGAGATTGGGAAGAATGTT
i caePb3.Scfld02_0      I 5 I 5
s caeJap4.Scaffold18142   75319 126 -   343467 AATTTA---CCTGTTAGCTACATTGGACGG--TACTTCCAGATCCGATGCTGCGGATATTTGTGAAACTGGCAGAAGCAATGCAACTACGAAGAGGTACAACATGTTTTGTGAGGGATGCCTGCATTTCA-T------------------
i caeJap4.Scaffold18142 I 1 C 0

a score=-344.000000
s ce10.chrX             3842458 48 + 17718866 --------AGCGATTCATGAATCAATAGAAAGGATATTGAAGAAGAT--------ACCGGAAAA
s caeRem4.Crem_Contig0   908612 35 -  4500979 ----------------AGCGATTGAGAGATAACAT-----TGAAGAT--------ACCAAAAAA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5901336 43 + 20921866 --------TTGGGTTAAGAAACCAATCAATGAGAt-----agaagat--------atcaaaaaa
i caeSp111.Scaffold630  I 5 I 5
s caePb3.Scfld02_0      2184944 44 +  4147112 --------TTGGGTCGAAAATGCAATcaataagag----aagaagat--------atcaaaaaa
i caePb3.Scfld02_0      I 5 I 5
s caeJap4.Scaffold18142   75445 58 -   343467 AAGATAAGATAAGATAGCGAAGCAATCGATCGGGC-----TCAATATCAATCGGCACGAAAAA-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8968707 52 + 21540570 I

a score=-33367.000000
s ce10.chrX             3842506 258 + 17718866 CAAAATG--------CTCAGTGAACACCTGACCTCTCAATAGAGATGCACGTAGACACCAATT------------------GATATTGATCAAAATGTTCGACGCTTCCCAAAACACTTGGGAAGAAT-------------------------------C-AAAAT--GAAACGGTCGCAGTGTACAGT----TTCATTATCAAGT---TTCTAAACCGTTTTG--A--TAGACCAAACACTGGTCAACACTA----TTCTAGCTTATCA-CTCTTATCGCGAAGCTATTGACAATAAG-------GACACTTTG----GCTCTTCATTCAAAAGAAAAA--TAAAC---
s cb4.chrX              8968759 202 + 21540570 caaattt--------tcaaattaatctTTGATTTATC---TAGAAGAAATTCGAACAc---ttggaa--------------aatt-------------------gattttgagaaaa----------------------tgtctgCAATAAGATATTTTC------------------AACTACAC--------------CACAGTAaatttcat---gttctgaaa--cgccccaaaagttgaaaaaatcat--tttcggaaaattccg-ttTGCACTGAG---------------AA-------CACTTTGTT----TGGTACG----------GAAACTCATGT---
i cb4.chrX              I 52 I 31
s caeRem4.Crem_Contig0   908647 283 -  4500979 CAAAGCTAAGCAATGCTCAATGAACACCTGACCTCTC---CGAAATGCACGTTGActc---tcaaaa--------------tattttgatcacgaatcaat-aatattttgaagcaATTGAGAGAACT--TTAAGAT-TTGAgggaaacgaaaaatttatCGAAAT--GAGGTGATCGAACTGTACGTT---TCCTTTTATCAGGTTTATTTCGTGCCGTTTTG--A--CAGACCAAACATTGGTGTATACCT--CTATTGAGCTTATCA-ATGTTATCGATAGGACATT-----TCAG-------CACTCTTTC----GGTTATC----------AAAA--TAAAC---
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold630  5901384 273 + 20921866 GAGAGCT---CACCGCTCATTGAACACCTGACCTATC---CGAAACGCACGTATA------TTGGAAGAG-----------AATTCCAATCAACAATcaataaatgttttgaaacagcTAAATAAAATGCTCTAGAT-------------AAAAATATGG-GAAAT--GAGGTGATCGAACTGTACGTTTAGGCTCATTATCAGCTTTATTTCGTGCCGTTTTG--A--CAGACCAAACATTGGTGTATACTT---------GCTTATCATTTGTTATCAATAGGACATT-----CGAGTCGAGCACACgcttga-----tttttc----------aaaa--taaac---
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      2184993 295 +  4147112 gaaga------aGCGCTCATTGAACACCTGACCTATC---CGAAACGCACG----------TCGGAGCAATCACCATCAGTTATTTTGATCAGTAA-CGTTAAACGTTTCAAAACAACTAACAAAATTGTTCTTGATTcggaaaacaacagaaaatgtAG-GAAATTAAAAGCAATCGAACTGTACACT--GTTTCTTTATCAGGTTGGTTTCGTGCCGTTTTG--A--CAGACCAAACATTGGTGTATACCCCTTTATCGAGCTTATCA-CTGTTATCAATAGGACATT-----TCAG-------CACTCTTTGAGACTCTTCTC----------AAAA--TAAAC---
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142   75503 210 -   343467 ----------TAGGGTGCAATGAACACCTGGCCTTT----GAAAATGCACGT---------TC------------------CATGCTAAT-------TGAgcaaagttttaaa-----taaaaaaaat-------------aatgaaaaaaaaagttcacaaaaat---------ttgaagtttCAAAT-----TTCTTTCCAG-----TTTCATACTCTTCTT--ATTTAGTCGGAA---TCGTGAAAACAA------------CATGA-ATAGTTTTCAGA--------------AT-------AGCCTTTTC----ATGTCAT----------AAag--ttatcagc
i caeJap4.Scaffold18142 C 0 C 0

a score=-384.000000
s ce10.chrX             3842764 2 + 17718866 AA-
s cb4.chrX              8968992 2 + 21540570 aa-
i cb4.chrX              I 31 C 0
s caeSp111.Scaffold630  5901657 2 + 20921866 aa-
i caeSp111.Scaffold630  C 0 I 34
s caePb3.Scfld02_0      2185288 2 +  4147112 AA-
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142   75713 2 -   343467 -at
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=-25544.000000
s ce10.chrX             3842766 216 + 17718866 TTTATATTGATTATATGATCAGTTGATGATTATTCAA--CAT-ATGGTTCAAC--ACAAATAAGAACA-AATACATC----TATTGACGTGATTTGGAGTTttaaaggtggtgtagtcgaatttcttttatttgtttattatatttaaaattgtctgaaaacaccgaattt--cataatgaaacttcttgaaaactattaaaaatagttat--------tacagctcaa--aaaatag
s cb4.chrX              8968994 211 + 21540570 tttctaacATTGTCTAGATAAGCTGATCTCAACCAAT--CCTGAAGTTTTCACTAAAACCTATGATTACAAGATGTTGAAGTTCCCGTGTGAGTTTGAACTTCATACCTGTTGT--GCACATTGGTTGGAACATCTAACTCCGATCCACAGTA-----AACCAACGCAATTTGTAAAA----------TGATAGCTAATAAAATCAGGAAT--------TTCATGGCTAGTGAAGAAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2185294 166 +  4147112 TTTTAAATAATCTTATGAT-------TCCTTTCAAAA--CGTGAATGTTCAAC--ATATTTATTACCAAAAAATATG----------------------CTTCGAAC---------GAGAAATGACCTGAAAGCTTGACTCTATCCAACTGGA----GAAGCGGTGGCATC--AAGAA----------TTAGAGCTATTGACATGATAA------------CAGGACAA--AAAGAAA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142   75715 152 -   343467 -tttcaTCACT---------------TCATTATCAAAATAGCGGCGTTTCGAC--AGGCTAAATA----AAAATG-----------------------------------------GAGTGTTTGCTTATCATGGTA-------TCAACATAA----AAATGAGTGCATTT--CAGAG--------CTTATTGACTgtcaaaataaacaatttattaACTATAGTTCAATTGATTG--
i caeJap4.Scaffold18142 C 0 I 209
e caeSp111.Scaffold630  5901659  34 + 20921866 I
e caeRem4.Crem_Contig0   908930  33 -  4500979 I

a score=761.000000
s ce10.chrX             3842982 8 + 17718866 cctaaaat
s cb4.chrX              8969205 8 + 21540570 CCTGAAAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2185460 8 +  4147112 CTCCATAT
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold18142   75867 209 -   343467 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=-2083.000000
s ce10.chrX             3842990 195 + 17718866 tagaataatttgaaatttgaccgacttgtcaatgtcgcagAGTTATACCCAAAATGTTGTAACCAAAATTGGACGACAAAAATTAGTTTCTAGACGCTGCGACATTTTTAAAAAACCATGGTGCCAGCTATGATGCAAAAATGACCAAATGTCATAGCCAACCTATTCAA--------------------ACAATTTTTTGATAGG----CGACTTCCA
s cb4.chrX              8969213 154 + 21540570 -------ACGTGAGAATTGGGAGA------AATGCT------------TTGAGATTTTGTG-------TTGGATGAGATCAATTG------AGAAG-------------AAGATACCA--------------ATGCTCACTTGAACACCTGACATGTTCAACCCGATCAATAGTTTAGGCTCCTCAAATAACACATTTAAAATAGAACTTTaagattcg
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2185468 148 +  4147112 I
e caeJap4.Scaffold18142   75867 209 -   343467 I
e caeSp111.Scaffold630  5901659  34 + 20921866 I
e caeRem4.Crem_Contig0   908930  33 -  4500979 I

a score=1605.000000
s ce10.chrX             3843185 23 + 17718866 AAAAAAAAACAA----CATTTATACAA
s cb4.chrX              8969367 26 + 21540570 -agaaaaaattgaaaacaattgtGAAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2185616 23 +  4147112 AAATAAAAACTG----CACGTATAAAA
i caePb3.Scfld02_0      I 148 I 26
e caeJap4.Scaffold18142   75867 209 -   343467 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=133.000000
s ce10.chrX             3843208 27 + 17718866 ---------CATACAACACttttaattatttttaaa
s cb4.chrX              8969393 36 + 21540570 TGAGGTGATCGAACTGTACGTTTCACTTTTTATCAG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2185639 26 +  4147112 I
e caeJap4.Scaffold18142   75867 209 -   343467 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=1164.000000
s ce10.chrX             3843235 8 + 17718866 acaaattt
s cb4.chrX              8969429 8 + 21540570 GCTAATTT
i cb4.chrX              C 0 I 105
s caeJap4.Scaffold18142   76076 8 -   343467 atcaATTT
i caeJap4.Scaffold18142 I 209 C 0
e caePb3.Scfld02_0      2185639 26 +  4147112 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=-123.000000
s ce10.chrX             3843243 1 + 17718866 t
s caeJap4.Scaffold18142   76084 1 -   343467 A
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2185639 26 +  4147112 I
e cb4.chrX              8969437 105 + 21540570 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=-6751.000000
s ce10.chrX             3843244 84 + 17718866 taCAAAAC----CATACCACACCTAACTTGTGGTG---------ACTCCACT-----TAAATTTTGAT--GAAAATTCACAAAAAATACCTGTATCTGAAATTA
s caePb3.Scfld02_0      2185665 87 +  4147112 TACGAAGCTTGGCATTCATCATCTA--TTGCAATATTCAGACGTACTCTACTGTTTCTAACTTTCTATTTGAGGATT---------------TTTCATTCATCG
i caePb3.Scfld02_0      I 26 I 11
s caeJap4.Scaffold18142   76085 39 -   343467 ----------------------------------------------TCCAAT---TCTGTATTTCGCATTGTTTATTAACGaaagata----------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8969437 105 + 21540570 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=0.000000
s ce10.chrX             3843328 11 + 17718866 AATTTTTCTGG
e caePb3.Scfld02_0      2185752 11 +  4147112 I
e caeJap4.Scaffold18142   76124  0 -   343467 C
e cb4.chrX              8969437 105 + 21540570 I
e caeSp111.Scaffold630  5901659 34 + 20921866 I
e caeRem4.Crem_Contig0   908930 33 -  4500979 I

a score=-9370.000000
s ce10.chrX             3843339 54 + 17718866 AAAATGTTGAAAGTGTTCAATATTTATCAA-AAAATTATGCGAAAAAATAAAACT
s cb4.chrX              8969542 42 + 21540570 AATA-GTG---ATCAGttgaaatatatatttattgTAAGGC---------AAAAC
i cb4.chrX              I 105 I 1
s caeRem4.Crem_Contig0   908963 49 -  4500979 AATACGTG---AATGttcaatatttattgaaaatgttagGCGAATA---AGAAAC
i caeRem4.Crem_Contig0  I 33 I 1
s caeSp111.Scaffold630  5901693 49 + 20921866 AAAACGTT---AATGTTCAATATTTATTGACAAAGTTATGCGAAAA---TGAATC
i caeSp111.Scaffold630  I 34 I 1
s caePb3.Scfld02_0      2185763 33 +  4147112 AAAAAGTT----------ATTATTGATTGGCATAAATAC------------AATT
i caePb3.Scfld02_0      I 11 I 157
s caeJap4.Scaffold18142   76124 39 -   343467 aaaatgca----------aaaaataaatgccagaaaaaagaaaaaa---aga---
i caeJap4.Scaffold18142 C 0 C 0

a score=37074.000000
s ce10.chrX             3843393 151 + 17718866 GTTCTCGAAAAGTTACATACAAAAATTGACCCTATCAGAAG----AAAAGCTCC--GGGTTTTAAAAATCGAAACCAGCAGTTCCAATTGAATATATCGTAAC----TATGCACCAGGAAGAATGGGG-AGGTGAATAT--TCAAACGGAGTGTGTCGGTGGGT--------
s cb4.chrX              8969585 114 + 21540570 GTTCTCGAAAAGTTACATAAAA--ATTGACCctatcaaaag--aaaaaagctcC--GAATTTAAAGGG---AAAAGAGCACTCATA----AAT-TTTCGGAACTATATATGCACCAGGACAATTCGGG--------------------------------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   909013 142 -  4500979 GTTCTCGAAAAGTTACATAAAAACATTGACcctatcaaaagaaaaaaaagctcCGGGAGACTTGAACA---AAAAGAGCACTTACATTCGAGT-TATTGGAAC----TACGCACCaggaaaaatcggg-tgaaaaattt--gaaaactg-----------ggat--------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5901743 133 + 20921866 --TCTCGaaaagttacataaaa--attgaccctatcaaaag--aaaaaagctccggg----ttgcaaa---aaaCGGACAATTACAATCGAAT-TCTCGGAAC----TACGCACCAGGAAAAATGTGGATTATTGATTC--AGAAACTG-----------ggat--------
i caeSp111.Scaffold630  I 1 I 5
s caeJap4.Scaffold18142   76163 134 -   343467 ------gaaaagttacataaa---atcgaccctattaaaag----aaaagCTCCGGG----CTGAAC----AAACGAGCAGTTACAATCAAAT-TATCGGAAC----TATGCACCAGGAAAAAGTTAG-Aggggattttcaaaaaactg-----------ggagGACGTGGG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2185796 157 +  4147112 I

a score=405258.000000
s ce10.chrX             3843544 1165 + 17718866  
s cb4.chrX              8969699 1193 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   909155 1170 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5901881 1137 + 20921866  
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0      2185953 1136 +  4147112  
i caePb3.Scfld02_0      I 157 C 0
s caeJap4.Scaffold18142   76297 1201 -   343467  
i caeJap4.Scaffold18142 C 0 I 66

a score=-6001.000000
s ce10.chrX             3844709 73 + 17718866 GATTGAATTTGAGATTGATGTTTCGTGAATCTGAAATATAACGTT------TTTTTTCTTTTTCAAGTGATTACTCTGA
s cb4.chrX              8970892 64 + 21540570 GATGGAAGAGTGAATAAT---TTCATGGGCCTGGAATTTTTA------------agttattttgaagaaatctcTACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   910325 70 -  4500979 GATGGAGGAATGGATGGA---CTCGTGGGACTGAAAATCACATAC------ATTACTGATTGCTTGTAGGTCAAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5903018 69 + 20921866 CATTGTTGAAGAAATTGC---TTCGTGTGACTGAAATTGtaagaa------atgataaaattacATGAGG-AACAAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2187089 65 +  4147112 CATTGTAGTAGTGATTGA---CTCGTGAGGCTGaaacaattattattttctataGTTCAATTTCTGGA-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   77498 66 -   343467 I

a score=514452.000000
s ce10.chrX             3844782 756 + 17718866  
s cb4.chrX              8970956 704 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   910395 749 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5903087 754 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2187154 748 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   77564 870 -   343467  
i caeJap4.Scaffold18142 I 66 I 29

a score=2627.000000
s ce10.chrX             3845538 11 + 17718866 CTGGAAATAAA
s cb4.chrX              8971660 11 + 21540570 CTGAAACTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   911144  8 -  4500979 ctgaaaat---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5903841  8 + 20921866 CTGaagat---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2187902 11 +  4147112 ctgaaaacaaa
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold18142   78434 29 -   343467 I

a score=304.000000
s ce10.chrX             3845549 2 + 17718866 AT
s cb4.chrX              8971671 2 + 21540570 AT
i cb4.chrX              C 0 I 44
s caeSp111.Scaffold630  5903849 1 + 20921866 -t
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2187913 51 +  4147112 I
e caeJap4.Scaffold18142   78434 29 -   343467 I
e caeRem4.Crem_Contig0   911152 0 -  4500979 C

a score=1248.000000
s ce10.chrX             3845551 7 + 17718866 ATTAACA
s caeRem4.Crem_Contig0   911152 7 -  4500979 attaaca
i caeRem4.Crem_Contig0  C 0 I 60
s caeSp111.Scaffold630  5903850 7 + 20921866 tttaata
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2187913 51 +  4147112 I
e caeJap4.Scaffold18142   78434 29 -   343467 I
e cb4.chrX              8971673 44 + 21540570 I

a score=50.000000
s ce10.chrX             3845558 41 + 17718866 CTTTATCGTGATCAAGATGAATTTTGGTAATATAGTTCAAA
s caeSp111.Scaffold630  5903857 23 + 20921866 attca------------------ATGATAATAAAATTCAGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2187913 51 +  4147112 I
e caeJap4.Scaffold18142   78434 29 -   343467 I
e cb4.chrX              8971673 44 + 21540570 I
e caeRem4.Crem_Contig0   911159 60 -  4500979 I

a score=0.000000
s ce10.chrX             3845599 2523 + 17718866  
e caePb3.Scfld02_0      2187913   51 +  4147112 I
e caeJap4.Scaffold18142   78434   29 -   343467 I
e cb4.chrX              8971673   44 + 21540570 I
e caeSp111.Scaffold630  5903880    0 + 20921866 C
e caeRem4.Crem_Contig0   911159   60 -  4500979 I

a score=433.000000
s ce10.chrX             3848122 6 + 17718866 TTTCCA
s caeJap4.Scaffold18142   78463 6 -   343467 ttttca
i caeJap4.Scaffold18142 I 29 C 0
e caePb3.Scfld02_0      2187913 51 +  4147112 I
e cb4.chrX              8971673 44 + 21540570 I
e caeSp111.Scaffold630  5903880 0 + 20921866 C
e caeRem4.Crem_Contig0   911159 60 -  4500979 I

a score=-805.000000
s ce10.chrX             3848128 8 + 17718866 AAAATTGT-
s cb4.chrX              8971717 7 + 21540570 -aaaatga-
i cb4.chrX              I 44 I 1
s caePb3.Scfld02_0      2187964 6 +  4147112 --AAATGT-
i caePb3.Scfld02_0      I 51 I 2
s caeJap4.Scaffold18142   78469 7 -   343467 --aaaagtc
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5903880 0 + 20921866 C
e caeRem4.Crem_Contig0   911159 60 -  4500979 I

a score=252883.000000
s ce10.chrX             3848136 412 + 17718866 ACTCACCTTTGAACGCCGCGAATTGCTGTTGCAAGAAATGCGAATTAAGT---GAGCCATT---ATGATTTCCTTGTAACATATCAGCAACTCTCCGTAATAAATCAGTACCCGCAAGGCCGGCTTGTTCCATGTCTTCGCC---GTTTCCGTTTGAGAACACTTCAGCTGACGTGTTGCCTTCGTCTTCTCTGCAATAACGAACAGAAGTTCCAGG-GACAGGCAGGCG------------CAAAGAATGGCGGCGGCGGGGGCTAGGAAGAAATACAAAAAGCGGGG----------CA-AAAATAAAACTAATAATATTAAAATCATCTGTATCATGTGTGTATGCTA-GTCAGACAACACGGGGCGCGCGATGTT--CCTAATTTAATTAAAATTTTTGCTTTCATTGTTCTTCGATGTGG----CTG----------CAGTTCAATTTGAACGCACA
s cb4.chrX              8971725 432 + 21540570 aCTCACCTTTTAATGAATTTATCTGTGCTTgtaaaaaatttgcatttatt---GTCCCGCTCTC---ATTTGCCTGTAGTAACTCTGCCACTTTTTTGAGGAAGTCGTTTGTCCCAAGAGGGACTTGGTCCATATCGTCGACGTTGTTGCCGTTGGTGAATACTTCGCCTGATGTGTTGCCTTCGTCTTCGCTGAAATAACGAACAGAAGTTCCAAG-GGAGTGATagcaagagagaaaaaaggaaaattgggggtgtt--ctaccag--aaaaaaagaagaagaaagggagacttctaaa-aaaataaaactaatattattaaaaTCTTCCGTATCATGCGTATGCTTTTAgtcaaacaaaaaa--------gatgtTCCCCTaatttaattaaaatttttgcttGTATTGTTCTTTGTTGTTTAGTTTCG----------CAGTTCAATTCAAACGCACA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   911219 388 -  4500979 ACTCACCTTTAAAAGCTGCCAGCTGTTGTTGTAAGAAATTGGAATTTAAT---GAGCCATTCACTGGATTTCCTTGTAATATATCAGCCACTCTCCGTAAAAATTCAGTACTCCC------GACTTGCTCCATGTCGTCGCC---GTTGCCGTTTGAGAATACTTCGTCTGACGTGTTCCCTTCGTCTTCTCTGCAATAACGAACAGAAGTTCCAGG-GGCGTGATTG--------------AGAAGAAtgggg------------------aaaaaggaaaagcgGGG----------Cg-aaaataaaactaattttattaaaatcatCTGTATCATGTGTATGCGCTT-GTCAAACAACACA----TCCTGATGTT--CctaatttaattaaaatttttgcttttattGTTCTTTGTTGTTC-GTTTTA----------CTGTTCGATTCAAACGCACA
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold630  5903880 391 + 20921866 ACCAACCTTTGAGAGAGGCAAGCTGTTGCTGGAGGAAATTTGAGTTGAGT---GTCCCATTTGACTGATTTCCTTGTAACATATCAGCAACTCTCCGTAAAAACTCGGTACCCGCGAGCCCGGCCTGCTCCATATCTTCGCC---GTTTCCGTTAGTGAACACTTCGTCAGACGTATTGCCTTCGTCTTCTCTGCAATAACGAACAGAAGTTCCAGGAGGCGTGATAG--------------AAGAA-------------------------TGCGAAGAAAAGCGGGG----------CGCAAAATAAAACTAATATTATTAAAATCATCTGTATCATGTGTATGCGCTA-GTCAAACAACATCAGG-GGCTGATGTT--CCtaatttaattaaa-tttttgatttcattgttCTTCGTTGTTC-GTCTTG----------CAGTTCAATTTGAACACACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2187972 372 +  4147112 GCTTACCTTTTAGGGATGCCAACTGTTGTTgtaggaaattggaatttaaC---GAACCATTCGACTGACTTCCTTGGATCATATCAGCCATTTTCCGTAAAAACTCGGTACCCGCAAAACCGGC---CTCCATTTCGTCGCC---GTTTCCGTTAGAAAATACTTCGTCTGATGTGTTGCCTTCGTCGTCTCTGCAATAACGAACAGAAGTTCCAGAAGGCGTGAAAG--------------CAatg-------------------------taaaaaaagaagc-ggG----------CG-AAAATAAAACTAATATTATTAAAATCATCTGTATCATGTGTATGCGCTA-GTCAAACAACGCC---------ATGTT--CCTAatttaattaaa--ttttgatttcattgtTC-----TGTTC-GTTTTG----------CAGTTCAATTTGAACACACA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   78476 394 -   343467 acttACCTTTTATAGCTGCTAACTGCTGCTGAAGAAAATCGGTATTAAGTGAGGAGCTGCTTATCTGATTTCCTTGCAGAATATCGGCAACTCTCCGCAAGAAATCGGTACCCGCGAGCCCGACCTGCTCCATTTCTTCGCC---GTTTCCGTTTGAGAACACTTCGTCGGACGTGTTGTCTTTGTCTTCTCTGGA--AACGAACAGAAGTTCTTGATGGGAAGCGAG--------------CGGgagaaagag------------------aaaagagaaaaaaggag----------tc-aaaataaaaCTAATATTATTAAAATCATGTGTATCATCTGTATGTGCTA-GTGAGACA--------------GTGTT--Cctaatttaattaaa--atttgctTTCATTGTTCTTCGTAGCGC-GTATTGCATCGCATTTCAGTTTAGTTCGAACGTACA
i caeJap4.Scaffold18142 C 0 I 636

a score=239.000000
s ce10.chrX             3848548 66 + 17718866 AAAAAAGCTACTCTGATA---CAGGA--ACATGTTTTCTT-T-TTTTTTGAAA-TTTCGTTAAAACAA--------ATTCAA
s cb4.chrX              8972157 56 + 21540570 AAAATAAATGCATAGAAAACTCGGGA--------ACGgat-tctttttgatat-tttca--gaagaaa--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   911607 58 -  4500979 AAAATAACTACAAAGAAA---CGGGA--ACCTAGACggat-t-ttttggtgaa-tttcA--GAAGCAA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904271 68 + 20921866 AAAATAACTACATGGAAA---CGGCAGTGTTTGCTCACAT-T-Tctgttcaaa-tttca--gaaacggGAGTTGAA------
i caeSp111.Scaffold630  C 0 I 76
s caePb3.Scfld02_0      2188344 56 +  4147112 AAAATAACTAC--GGAAA-------ATTGTTTGCTTacatgt-tttgtttgaattttca--gaaacag--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I

a score=-7900.000000
s ce10.chrX             3848614 82 + 17718866 TTTTACTAAGTTAGGCAGGAATTCAAAAAAGAATGTGGTG-------ATCCATCGAAGAAAAAAGTGC---------ATGTCGAAAGAATGATGAATG----
s cb4.chrX              8972213 72 + 21540570 ------------aagcgGGAAT---AGCGAAAATAGAATACAACATTTTCTAACGC--CAAAAAGTGC---------Atgc--acaaaattcgaaatgat--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   911665 50 -  4500979 -----------------------------TAAATAGAATA-------TTCAGTCTA--CCGAAAGTgc---------attt--g-gaaatttttaatgct--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2188400 61 +  4147112 ------------------------------gaGCTGAGCA-------TCCGGTCTA--CAAAAAGTGCTAGAATagaatca--aaaacatattcaaaaatgg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I
e caeSp111.Scaffold630  5904339 76 + 20921866 I

a score=-3710.000000
s ce10.chrX             3848696 40 + 17718866 CAAACGAAAATCGGAAGTCTACTTCAGTTCACA-------GGTTTCA-------
s cb4.chrX              8972285 39 + 21540570 ---tcaaaaaacgGAAG-----TTCGGCTCACT-------GAGTGAAACTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   911715 46 -  4500979 ---ATAAAAAACGGAAG-----CACAGTTCAATGACCCGGGACCGAAACAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904415 19 + 20921866 -------cagaCAAAAG-----TTCGAAACG-----------------------
i caeSp111.Scaffold630  I 76 C 0
s caePb3.Scfld02_0      2188461 30 +  4147112 -----gGAAAACGGAAG-----TTCAGTTCACT-------GATTCAA-------
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold18142   78870 636 -   343467 I

a score=-6427.000000
s ce10.chrX             3848736 33 + 17718866 TTGCTAA------TTTCTAAATCGACCTTATATTCATTG------------
s cb4.chrX              8972324 28 + 21540570 GGCAtaa----------gaaattgag-agaaatt--tTT----------TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   911761 49 -  4500979 GGCctaaactcttttttgaaataaagttgaaagt--tttccaagaactcta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904434 21 + 20921866 -------------TTTTGAACTCC---Taacaat--ttg------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2188491 44 +  4147112 I
e caeJap4.Scaffold18142   78870 636 -   343467 I

a score=42401.000000
s ce10.chrX             3848769 222 + 17718866 AACCATTTTTTTTCTC--ATCCAGAAAACGACTGTAACTAAAGACCAACTAGCAAAA---GA-----------------TATCATC-ACACATGCAGCCGCTGAAATATTCATAT-TT-CAGTAGTTCGGAAATGCTTTTTGCATAATTTTAAGGAGGGTAACTGAGCAACAAGAACAAGATTTCTGAGATGTTGA---AAAATTCAGGAATTTCTGA-AACAAAATGAAAGGGTAC---------CTGACGTCAATAAA---------
s cb4.chrX              8972352 207 + 21540570 --GTGTATCAAATAGCAGAA----------ACTGTAACTGAAGATCAACTAGAGAAG---TGGAAAATCTTCTTGCTCTTATTGCA-GCACATGCGTGCATTGAAATATTCATGA-TCTTAGTAGTTCGGCAACG-TTTTTGCATAAT--------GTGTAGCTCAGCAAC-------AGATTTCTGAGgcttttg-----------agcatttttgagaaactaATTTAAATGTAA---------CTGACGTCAATAAA---------
i cb4.chrX              C 0 I 164
s caeRem4.Crem_Contig0   911810 200 -  4500979 --aaattttagaaaac--aa----------actGTAACTAAAGATCAACCAACGGAA---TA-----------------TATCATC-ACGCATGCGTGctctgaaatatttattc-tC-TAGTAGTTCGACAacg--ttttgcataatttta---AGTGTAACTCAGCAAC-------AGATTTCTGACTCTTTCGAGGAAACcttcagcatttttga-aaactag-caAGAAGTAA---------CTGACGTCAGTTTA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904455 211 + 20921866 aagaatgtttcaaaa---------------actgtaaCTAAAGATcaacgaaaagaaa--ta-----------------tatCATT-GCACATGCGTGCtctgaaatattcatttctc-taGTAGTTCGGCAACG--TTTTGCATAATTTTA---AGTGTAACTCAGCAAC-------Agatttctgaagttttgccagaattttgaatcagatttg----------gaaaaagtgataagTGACGTTAACATAAATCAATCAAGTAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2188535 216 +  4147112 AAACATTTTATGCAAC--ATCTAGATTTTGACTGTAGCTaaagatcaagaaaaaagCATGTA-----------------TATCATTCGGGAAAAAGTgctttgaaatatttattt-tc-tagTAGTTCAGCAACA--TTTTGCATAATTTTA---AGTGTAACTCAGCAAc-------agatttttgaggttttgcctgaattttcaatttttttttc---------cgaaaagtaa-----------agcattacttcaaaaaattca
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I

a score=-3763.000000
s ce10.chrX             3848991 17 + 17718866 AGTTCTGAAGTTGGAAA--------
s caeRem4.Crem_Contig0   912010 17 -  4500979 -AATCACGAATTGGgtaa-------
i caeRem4.Crem_Contig0  C 0 I 148
s caeSp111.Scaffold630  5904666 17 + 20921866 --------AGTTATGAAGCagtgaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2188751 14 +  4147112 --------aatttgacatCATT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I

a score=681.000000
s ce10.chrX             3849008 8 + 17718866 CTTTCAAA
s caeSp111.Scaffold630  5904683 8 + 20921866 ttttcaaa
i caeSp111.Scaffold630  C 0 I 160
s caePb3.Scfld02_0      2188765 7 +  4147112 TTCTCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I
e caeRem4.Crem_Contig0   912027 148 -  4500979 I

a score=721.000000
s ce10.chrX             3849016 14 + 17718866 GATCAAGATCAACA
s caePb3.Scfld02_0      2188772 14 +  4147112 GATCAAAGTTTACA
i caePb3.Scfld02_0      C 0 I 220
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I
e caeSp111.Scaffold630  5904691 160 + 20921866 I
e caeRem4.Crem_Contig0   912027 148 -  4500979 I

a score=0.000000
s ce10.chrX             3849030 646 + 17718866  
e caePb3.Scfld02_0      2188786 220 +  4147112 I
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I
e caeSp111.Scaffold630  5904691 160 + 20921866 I
e caeRem4.Crem_Contig0   912027 148 -  4500979 I

a score=350.000000
s ce10.chrX             3849676 15 + 17718866 TTCTTTCTGATAC---CA
s caeRem4.Crem_Contig0   912175 18 -  4500979 TTCTTTTTCTTACGAACA
i caeRem4.Crem_Contig0  I 148 C 0
e caePb3.Scfld02_0      2188786 220 +  4147112 I
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I
e caeSp111.Scaffold630  5904691 160 + 20921866 I

a score=-166.000000
s ce10.chrX             3849691 10 + 17718866 -GTTCCGGAAG---
s caeRem4.Crem_Contig0   912193 10 -  4500979 ACTTCCAAGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2189006 13 +  4147112 -GTtccgaaaagag
i caePb3.Scfld02_0      I 220 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I
e cb4.chrX              8972559 164 + 21540570 I
e caeSp111.Scaffold630  5904691 160 + 20921866 I

a score=546.000000
s ce10.chrX             3849701 1 + 17718866 A
s cb4.chrX              8972723 1 + 21540570 A
i cb4.chrX              I 164 C 0
s caeRem4.Crem_Contig0   912203 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2189019 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18142   78870 636 -   343467 I
e caeSp111.Scaffold630  5904691 160 + 20921866 I

a score=-1361.000000
s ce10.chrX             3849702 21 + 17718866 AAAA--------ACCACAAAAAAA---------CTGGA
s cb4.chrX              8972724 18 + 21540570 AAAA--------ACCGGGGGACAA---------CT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912204 25 -  4500979 AGAATGACATATACCAACAAAAAA---------C----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904851 21 + 20921866 aaga--------ataaaagaaaga---------caGAA
i caeSp111.Scaffold630  I 160 C 0
s caePb3.Scfld02_0      2189027 30 +  4147112 aaaa--------ataaagaaaaaaactggaagccGGAA
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18142   78870 636 -   343467 I

a score=99049.000000
s ce10.chrX             3849723 307 + 17718866 AAAAAG--TCGCATCTC----ATTCCTTATGAATTTGAAAG---TGCCGAACAATATGCGT-------AAGTT---------GCAT-------TGACCGTC--------A-------ACGATGTTGCGTTCATAGTGGATAGAGTGCATTATGATGCATTAAATTTT------------------------------TTCGATATCGAATCGAATACCCCTGCGCGCACTTTTCGTCTCTAGGCATTCGCACGTAGA--CGAAAAAAAG-------------------TTGAGGACGAACCGTT----------------GACAGACCGGT--AAAAT--ATTGAAAGTC-----------------AAAGTTATATA-----ATGTAACAATCTGCGTTCCCTAACATGCAGCCAACCGTGACTACTG-TAATAGTGC---------TCTACCATT
s cb4.chrX              8972742 341 + 21540570 TAGAAG--TCACATCTC----ATTTCttatgaatttcaaagttttggccAACAATAAATATGCGGAAGAGGTTCCTCCTAACCCATTTCT--ATGACCCTC--------ACGACGCCGTCATGTTGCGTTCATTGTGGATAGAGTGCATTATGatgcattaattttttttt-----------cgtatatgGTGCGTCGATGATGTTGAA--------TACGACGCATCCTTTTTA----TAGTCATACGCACGTATAACccgaaacaat--------------attttttgaggGCATC---------------------GGTAGACAGG-------T--ATCGaaagtc----------ag-----aaaaatatat------attcgc-----TGCGTTCAA----ATTCAACCAACCGTGGTTACTG-TAATTATGATGCTCGTTGTCT--CGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912229 301 -  4500979 GGCAAG--TCACATCTC----ATTTCTTATGAATTTCAAAG---GGGTGAACAATATACGT-------AAGTT---------CCATTTCT--GTGACCCTC--------ACGATA--GTCATGTTGCGTTCATTGTGGATAGAGTGCATTATGATGCATTAATTTTT------------------------------GTCGATGTTGAA--------TACTGCGCATCCTCTTTA----TAGGTATACGCACGtata--cgaaaaaaaa--------------gaatattgagGGCAGTCC-----------------AATGTAGACTGGTATAAAAT--ATCGAAAGTT----------AAAAGTCAAAATTATGT------GTTCAA-----TGCG---------ATGCATTCAACCGTGGTTACTG-TAATAGTGC---------TCT--CGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5904872 305 + 20921866 CGGAAG--TCACATCTC----ATTTCTTATGAATTTAAAAG---TGGCGAACAATATGCGT-------TAGTT---------CCATTTTTGTGTGACCCTC--------ACGACA--GTCATGTTGCGTTCATTGTGAATAGAGTGCATTATGATGCATTAA-TTTTTTGC------------G-------------GTCGACGTTGAA------TATACTGCGCATCCCCTTCA----TAGTCAGTCGCACGTATA--CAAAAA-----------------------TTGAGGGCAGTCCCCT--------------------GACAGGTTAAAAAT--ATCGAAAGTC----------AG-----AACAATATAT------GTATATAAA-CTGTGTTCAGTTGGATTCATTCAGCCGTGTGTACTG-TAATTATGC---------TCT--AGTC
i caeSp111.Scaffold630  C 0 I 81
s caePb3.Scfld02_0      2189057 342 +  4147112 AGAAAG--TCACATCTC----ATTTCTTATGAATTTGAAAG---TATCGAACAATATGCGT-------AAGTT---------CCATTTCTTCATGACCCTCTACTCACGACGATA--GTCATGTTGCGTTCATTGTGGATAGAGTACATTATGAtgcattaatttttttgc-----------gg-------------GTAGTCGTTGAA---AATAATACTGCGCATTCTTGTTA----TAGGTATTCGCACGTATA--CAAAAA-----------------------TTGAGGGCAACCCCTCTCAT-----TTTTGATGGTAGACAggtaaaaaat--atagaaagtTGAGagagtcaaa-----aaaattatataactGGGTATGTA----TGTGTTCGATAGGATGCATTCAACCGtggttactg-taattttgc---------TCT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   79506 317 -   343467 --AAAGTTTCTCATCTCATCGATTCCTCATGAATTCGCAAG-TATGGCGAACAATATGCGT-------AAGTT---------CCATTTCT-------------------ACGAC---CCGATGTTGCGTTCATAGTGGGTAGAGTGCATTATGAtgcattaaatttttttcctttttttttggg-------------gtcgGTCTTGGC------------------------CA----TGGCCATTTGCACGTATG--TCAAGGGGAGCGACAGACGGAGGAAAAAATTGGCGGCATAGACTACAGTATGCATGCAAAATATTGATGGGAAGAGGATGGaaaaaaaGTC----------AA-----AGCGGAATAAT-----GTTTGAA----TGAGTAAACGAGAAT----------GTGGTCTCTGACAAGT----------------------
i caeJap4.Scaffold18142 I 636 C 0

a score=-1204.000000
s ce10.chrX             3850030 28 + 17718866 TATTTCTCTACTTTTCAAGTTGAAAGTT
s cb4.chrX              8973083 20 + 21540570 ------TCTAGTTATGcggca--aaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912530 21 -  4500979 ----AATCTGGTTGCGTAAT---AAGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2189399 27 +  4147112 TGTCATTCTGGTTGTGTAATGT-AAATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   79823 28 -   343467 TACAGGGCAGATTGAAAAGTTGGAAGTT
i caeJap4.Scaffold18142 C 0 I 85
e caeSp111.Scaffold630  5905177 81 + 20921866 I

a score=-2391.000000
s ce10.chrX             3850058 25 + 17718866 GTGTGTGTACTGAAAATTCAACAAA-----------------
s cb4.chrX              8973103 31 + 21540570 ga----------aaaattcaaacatagA-GAATTGTAACATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912551 32 -  4500979 AT----------CAAATTCAAACATTGATGGGTTGTAACAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2189426 16 +  4147112 AT----------CGAATTCAAACATA----------------
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold18142   79851 85 -   343467 I
e caeSp111.Scaffold630  5905177 81 + 20921866 I

a score=-17959.000000
s ce10.chrX             3850083 58 + 17718866 -----------------------------------------AAAATTTAGATTACGC--TG--------------TGGCACCAACTAAGTAG-GAGTGTGTAAAATAAATAAATTG
s cb4.chrX              8973134 58 + 21540570 AGTCA--------------------ACATTTGCCTAGGAACCTAATTCTAATTGCTCAGTG--------------TTG---------AATAAA-------------aacgaagt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912583 82 -  4500979 AGTCAATATTTTATTACCAGCAGAGACAGTTCTTT------CTAATTCTAATTGCTCGTTG--------------TTG-------TAAGTAAAGAAT-----TTctaaagaaat--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5905258 54 + 20921866 --------------------------caaattctga-----ttG--TTTAAGTGTCTA-TG--------------TAG-------TTAGTACATAAC-----TTCTGAAGGAAT--
i caeSp111.Scaffold630  I 81 C 0
s caePb3.Scfld02_0      2189474 77 +  4147112 --------------------------cactttttgaaacagtta--ccTAATTGCTCA-TGTCTACATAGTCACATAG-------TTAGTAC-CAACGTTTTTCCCAGAAGAAT--
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold18142   79851 85 -   343467 I

a score=222899.000000
s ce10.chrX             3850141 657 + 17718866  
s cb4.chrX              8973192 630 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   912665 708 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5905312 695 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2189551 674 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   79936 683 -   343467  
i caeJap4.Scaffold18142 I 85 I 26

a score=5438.000000
s ce10.chrX             3850798 9 + 17718866 TTTCGTTAT
s cb4.chrX              8973822 9 + 21540570 TTTAGTcat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   913373 9 -  4500979 TTTAGTCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5906007 9 + 20921866 TTTAGTCGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2190225 9 +  4147112 TTTAGTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   80619 26 -   343467 I

a score=138167.000000
s ce10.chrX             3850807  874 + 17718866  
s cb4.chrX              8973831  764 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   913382  816 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5906016  804 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2190234  804 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   80645 1048 -   343467  
i caeJap4.Scaffold18142 I 26 I 187

a score=-22988.000000
s ce10.chrX             3851681 136 + 17718866 GTTGTTATACCCGAATAGATTTGGGAAATTG---TGAAA---------------------------------------------------------A---G------TG-----GTGGAATGAAAAATAACA--------AAGATGTG---TGAGCCCGTCTATTTATTGGGTAAACTTCGAATGGCT--CA-AGAATGAC--------------------CAATCTTTTCAG-----TGAAATTTTGC
s cb4.chrX              8974595 209 + 21540570 cct---ATGTCAAACGAGGGTTCGGAATCTTTCTTAAAAAACATATTGTAGATGCTCGAATAGAAGTCACCCTATCAGTGCactttaaactcaattatctcagttcata-----tgagagatataaaaaatctgtgaactgATATATT---------------ATTGGTAAAT--------------T--TATGAtgaatttatcagttttcaaacttttgatatcttttaaaggaattgAGATTGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914198 108 -  4500979 CCCTCGATATCAGAT---------GGATCTCATTTGAAA---------------------------------------------------------ATCTC------TA-----TTGGACACAGCAAAAAAC--------AACAtgtg---------------tttcttattt--------------t--caagAAGAGAT--------------------AAATCTATTAAG-----TAACATTGTGC
i caeRem4.Crem_Contig0  C 0 I 125
s caeSp111.Scaffold630  5906820 104 + 20921866 atttcagTATCAGA--------------------CGAAA---------------------------------------------------------ATCTG------AA-----TTG------TCGGAAAAC--------AACATGTgtctcctctttctctgtttctcgttt--------------t--ca-aaaaagat--------------------aaatgtATTAAG-----TAAG-TTGTGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191038 112 +  4147112 ACTTCTCTCTTAGA----------Gaa------ttgaga---------------------------------------------------------atctg------aaaatccttggaaaaataggaaaac--------aacatgtg---------tttctgtttcttgttt--------------ttcca-gaaaagat--------------------aAATATATTAAG-----TAAG-TTGTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   81693 187 -   343467 I

a score=-16719.000000
s ce10.chrX             3851817  87 + 17718866 AACTTCCGAATTGA-----------AATGC--------------------------GGATGTATTATGATTATGATCGT------------CTAGCCCGATGACGACGCGTCAGGAATAA--AAA-ACAA-AGGAATAAA-----------------------------------------------------------------------------------
s cb4.chrX              8974804 214 + 21540570 AAGCTCAAAATGGAattgggcttctatcagagcatttactgtatttttcgtCTTATGAATCTATTGGGATAACAATTAAGTAATTGTCCGAACACCTAGCAAA--------CGAAGATGATGagataaaa-atgagcaatttcgaaTAGAAGAGGAAGACACTAACACATTACTTCTCACATACGGCTCCCGGGTCAAATGGGTGAAGATGCATGGGAATAGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5906924 108 + 20921866 -------------------------ATCAG--------------------------GTAAATATTGAGAGCACAATTGA--------------GGCGAAGAGA------GTCAAGGATGA--AAACACTA-CTAGCTCACATC----------------CTAGCACACA---------------AACTCCCGGGTAAAAGTGGAAGGGGAGGA----------
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2191150 112 +  4147112 -------------------------ATCAG--------------------------GTAAATATCTAGTACACAATTGA------------ACGAATAGAAGA------GTCAGGGATAA--AAACACAAGTTGGTCCGCATC------------------CTAGCACA--ACT----------AACTCCCGGGTAAAGTGGAAGGGGGAGGA----------
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18142   81693 187 -   343467 I
e caeRem4.Crem_Contig0   914306 125 -  4500979 I

a score=2724.000000
s ce10.chrX             3851904 7 + 17718866 AGAAGGA
s cb4.chrX              8975018 5 + 21540570 --ATAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914431 7 -  4500979 GGGAGGA
i caeRem4.Crem_Contig0  I 125 C 0
s caeSp111.Scaffold630  5907044 7 + 20921866 GGGAGGA
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      2191274 7 +  4147112 GGGAGGA
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18142   81693 187 -   343467 I

a score=154586.000000
s ce10.chrX             3851911 297 + 17718866 AAAATTCTTTATGGCTGAAATAATTTCTCACTCGATTACTCGCCTTGCTCTTTATCGT----CCTC-TTTTT-AATCTACTTCACT--------------------------------ACACACATCAGTGGGTG--AAAAAAAATTATGTACAGCCGTTTAATTAGTGA-GAGGTGCCCTATGTTGGGACG--TTTTACTAACCATG----------TGTGTCTGTGT-----CAGTGCTCCTGCTTATTTAATTACCAGTTTGCAGGAA----AAA-AGAACAAGATT-----------------------------TTAGAAAAAAAAGATGGGAAATAAGACGATGAGCATGAAATAAAAA--------CCTTTAGAAA-TTGCTTCTATGAAA
s cb4.chrX              8975023 318 + 21540570 GAAATTCTTTATGGCTGAAATAATTTCTCACTCGATTACTCGCCTTGCTCTTTATCGGCCCTCGTC-TTTTTCAATCTACTTCactacacacacacacacacacacacacacacacacacacacatcaatga-----aaaaaaaattatgtacaGCCGTTTAATTAGTGC-GAGGTGCCCTATGTCGGGGAG--GTTTTCTTACAGCGCAGCAAAAACGTCTTCTTTGT-AAGGAGGGGCTTCTGCTTATTTAATTACCAC-TTGCaga--------gcaacaaaaaatt-----------------------------tcagaaaaaagtagtCGGG-----------------AGCAAAAAGA--------TCTTTAAAGGTTCCTTTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914438 257 -  4500979 GAAATTCTTTATGgctgaaataatttctcaCTCGATTACTCGCCTTGCTCTTTATCGTC---CGTC-TTTTTCAATCTACTTCACT--------------------------------ACACACATCAGTG-------GAAAAAATTATGTACAGCCGTTTAATTAGTGC-GAGGTGCCCT---TCGAAGAGACGTTTTTGTACAATG----------GGTGTCTATGT-------GTGCTCCTGCCTATTTAATTAGCAA-TCGCAGA--------A-AGAAcagcatt-----------------------------tgaaaaaatagaaaaatac-----------------gGGACAAAAA--------CCTTTGAAAG------AC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907051 258 + 20921866 GAAATTCTTTATGGctgaaataatttctcaCTCGATTACTCGCCTTGCTCTTTATCGG----cgtcttttttcaatctacTTCACT--------------------------------ACACACATcagttgagaagaaaaaaaattatgtacAGCCGTTTAATTAGTGA-GAGGTGCCCTATGTCGGAC----GTTTACTAACCATG------------TATGCGTGT----------CTCCTGCTTATTTAATTACCAG-TTGCAGG--------A-AGAacaagatt-----------------------------tgaaaaaaa----gtggga-----------------ggAGTGAGAA--------TCTTTAGAAA-TCATCT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191281 268 +  4147112 GAAATTCTTTATGGCTGAAATAATTTCTCACTCGATTACTCGCCTTGCTCTTTATCGG----CGTC-TTTTTCAATCTACTTCACT--------------------------------ACAcacatcagttga----aaaaaaaattatgtacaGCCGTTTAATTAGTGAGGAGGTGCCCTATGTCGGAC----GTTTACAAACCATG------------TGTGCGTGTCTGTGTGGTGCTCCTGCTTATTTAATTACCAG-TTgcaggaa----aaa-agaacgagatt-----------------------------tgaaaaaaa-----tagga-----------------ggaGCAAAAA--------CCTTTGGAAA-TCGTGTC-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   81880 302 -   343467 AAAATTCTTTATGGCTGAAATAATTTCTCACTCGATTACCCGCCTTGCTCTTTATCGT----CGTC-TTTTCCAATCTACTTCACA--------------------------------ACACACatcagt-------tgaaaaaattatgttcAGCCGTTTAATTAGCGC-GGTGCCCTCTACGTGTGAG----GACGTCTGCCTCGT------------CGTCCTCGTCGTCCTCTTGCTCTTGCCTTTTTAATTACTAT-TTTgagaagaaacaaa-aaaacgagatTCACTGACGAAATGTAGAAGTACATATGTAcaaacaagaagaagaagaa-----------------gaaaaaaaaagttcaggtTTTATGAAA----------------
i caeJap4.Scaffold18142 I 187 I 780

a score=-51698.000000
s ce10.chrX             3852208 178 + 17718866 GAATAAAAGTGCGAAA--TGCAAAGAGCAAATTGTTTTGGTAA------------------------AAATAACTTTTTG----CTAAAAGTTTAA---------------TGTT--------TCTAAAAAATACTTTT-------------------------GATTCC------AAAACATCTTCTCAAAAAATATAAACATGTACATACAGTACAAAAACTATA------CAAAGTTCTAAAAACTATTGAACAAAATGTTCTGG---
s cb4.chrX              8975341 255 + 21540570 -AATATAAACGGGAAAGATTTAATGATT--TCTGTATTTTGGattaattttcagcttgttttgtattgaaaattttttcgaactctcaagattcaaagatttcgctccaaaaaacttctaagaaaaaaaaactaattttcaaaaatgcaatcggtcttttccccattttt---ttcacgGCGATTTCAATGCAGAT-TGCATAGGATTTTCCCAGGAGAGGAATTTCAATgggaaaagttggaaaaacca------aaaatattctCG---
i cb4.chrX              C 0 I 77
s caeRem4.Crem_Contig0   914695 181 -  4500979 -AGGAAGCACGATAAAG-TGCGACGATC--TTTTCATTGcaga------------------------aaagtgttttttgaacatttgaattttag-----------taGAAGAC----GACAAGTAACAATTGGCCTC-----------GCGgcattttaaaagttttc------------gtttCTCTGGAACT-AATAAAGAAGTCACC---------GATATCA-----TAAAATCTACActacaa------taaatatttttc---
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  5907309 200 + 20921866 ---------CGAG-----TACACCGACC--TTTGTTT----GA------------------------GACAGTTCGATTGTTTTATCGGaactcaa---------------aatc----aaaaattaaaaaaaagtttc-taatGTGAATGAAGAATTTCGGTAAATTCCAGATAAGAATcgagttttttcaaact-tataTTGAGAACCCTAGTTTAAGGATTTTTTGCAATAGATCTTCGGACGACtc------caaacaaaaatgatg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191549 161 +  4147112 -AAG----ACGGG-----TTCAATGACC--TTTGT-------------------------------------TTCTGCTGATTTATCAGAAACTGA---------------AATC----------TTGCAAAATGTTTC-TGAACTG----------TTGAATCGGTTCTAATTATAGAAC-AGTTCTACTGAA----GTACTTTGGAATTCAATACGAAAACTTTCAACAAT------------GACCG------AAAATTTCTGTGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82182 780 -   343467 I

a score=-6658.000000
s ce10.chrX             3852386 36 + 17718866 TTCCCATGCCACGAACGAAATGTTTGCTTAGCCGCG-
s caeRem4.Crem_Contig0   914885 28 -  4500979 ------tCTCCAGA---GAAGATTTTGTTTGGGGGGA
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5907509 24 + 20921866 ---------ttcGA---GAATAATTGCTgaataaat-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191710 17 +  4147112 -------------------ATAATTTGTCCATTTTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   82182 780 -   343467 I
e cb4.chrX              8975596 77 + 21540570 I

a score=7154.000000
s ce10.chrX             3852422 34 + 17718866 TAATTTCGAAAGGACC--------TC------TGAATATGCAAATGAG
s cb4.chrX              8975673 48 + 21540570 TAATTCTGAAACATCCGGCTCCCATTCCTCAATGAATATGCAAATgcg
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig0   914913 40 -  4500979 --ACATTCAAAAAACGGGCAGTCGTC------TGAATATGCAAATGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907533 34 + 20921866 --------ataaattttgGGCTCTcc------tgaatattcaaatgag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191727 34 +  4147112 --------AAACATTCAGGCTTTTTC------TGAATATGCAAATGAG
i caePb3.Scfld02_0      C 0 I 43
e caeJap4.Scaffold18142   82182 780 -   343467 I

a score=-2425.000000
s ce10.chrX             3852456 6 + 17718866 CAGCAT-
s cb4.chrX              8975721 7 + 21540570 cattttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914953 6 -  4500979 AA-TTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907567 5 + 20921866 -aGTAT-
i caeSp111.Scaffold630  C 0 I 39
e caePb3.Scfld02_0      2191761 43 +  4147112 I
e caeJap4.Scaffold18142   82182 780 -   343467 I

a score=844.000000
s ce10.chrX             3852462 29 + 17718866 CGAAAAAAACATATTTCCTTTAGATCATA
s cb4.chrX              8975728 14 + 21540570 cgaaa---------------cggatcaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914959 14 -  4500979 CGAAA---------------CGGATcgag
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2191761 43 +  4147112 I
e caeJap4.Scaffold18142   82182 780 -   343467 I
e caeSp111.Scaffold630  5907572 39 + 20921866 I

a score=-2859.000000
s ce10.chrX             3852491 21 + 17718866 -------TTTCA-AAAATTCC--TAGAACTA-----
s cb4.chrX              8975742 24 + 21540570 tttccattttaacaaaaaaccg-------aa-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   914973 29 -  4500979 tttcagttttca-aaaaagtcg-tcGTTTGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907611 28 + 20921866 -------tttca-aaaacctcaCTCATTCTACACTA
i caeSp111.Scaffold630  I 39 C 0
e caePb3.Scfld02_0      2191761 43 +  4147112 I
e caeJap4.Scaffold18142   82182 780 -   343467 I

a score=-5579.000000
s ce10.chrX             3852512 11 + 17718866 ----------------TTTGGCTATTT
s cb4.chrX              8975766 27 + 21540570 aaaggagATTCAAAAGTCCATAAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   915002 15 -  4500979 ATAGGATTTTTATA------------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907639  2 + 20921866 -------------------------TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191804 11 +  4147112 ----------------GTTGTCTAGTT
i caePb3.Scfld02_0      I 43 C 0
e caeJap4.Scaffold18142   82182 780 -   343467 I

a score=-11036.000000
s ce10.chrX             3852523 36 + 17718866 GAGAAAAAAACAAATAAGAAT--------GTACAAAACCAACCT-----------
s cb4.chrX              8975793 40 + 21540570 G----AAGATTCAAGTGCaataagaattttgaaaagtttaaact-----------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   915017 25 -  4500979 G----ATGAGCTAATTGGAGT---------------TTTCAACT-----------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5907641 23 + 20921866 G------AACCGTA---------------TCAAAAGATCAAACT-----------
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      2191815 32 +  4147112 G----AAAATCCtactaaaat--------ccaaaaaatcaaact-----------
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18142   82962 40 -   343467 ----gaaaaataaacaga-----------taaacaaacaaaaatagtACGTACCT
i caeJap4.Scaffold18142 I 780 C 0

a score=1473.000000
s ce10.chrX             3852559 22 + 17718866 GATACAGTGCTCACTGAGATCA
s cb4.chrX              8975838 22 + 21540570 TAGATTGTGCTCATTAATCTCA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   915047 22 -  4500979 TAGTTCTTGATCAAGTAATCCA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5907669 22 + 20921866 AACGCCATTCTCCATCATTTCA
i caeSp111.Scaffold630  I 5 C 0
s caeJap4.Scaffold18142   83002 22 -   343467 GAAACAGTTTTCGCCAAGTTCA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2191847 30 +  4147112 I

a score=55668.000000
s ce10.chrX             3852581 100 + 17718866 TTATTCGCTATTTGCCTGAGCGATGCCAGAATTGCATCCGTGGCATCTACCTGCATTGCTGGACATGTTACTTCTTCTGATGGCTGTTCAA---CTTTCTGAA
s cb4.chrX              8975860 100 + 21540570 TTATTGACGAACTGTGTGATTGATGCCAGTAAGGGTTCCGCGGCATCCTGATGCATCGCTGGGCATTTTATTTCTTCCCGAGGTTGTACAA---TTTcctgaa
i cb4.chrX              C 0 I 658
s caeRem4.Crem_Contig0   915069  97 -  4500979 TCACTAATAAGTTGTTTGATTGACGCCATCAATGGTTCTGCACCATCC---ACCATCGCTGGGCATTTTATTTCTTCCGGGGGTTGTTCAA---TTTCCTGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907691 100 + 20921866 GTATTAATAAACTGTTTGAGGGATCCAAGAAGAGCTTCCGTTGCATCCACCTGCATCGCTGGACATTTCACTTCATTCTGCggttgttctt---cttctcgat
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191877 100 +  4147112 TTATTAATAAACTGTTGAAGTGATGCCAGAAGGGGTTCGCTGGCTTCCACCTGCATCGCTGGGCATTTTATTCCTTCCGGCGGTATTGCCt---cttcctgaa
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18142   83024 103 -   343467 TTACTTGTAATCTGCCGAATTGATGCCAGAAGAGGTTCTGTGGCATCCACTTGCATAGCTGGGCATCGTACCTCACTAGAAGGCTCTTCCTCGGCTTCCTGTA
i caeJap4.Scaffold18142 C 0 C 0

a score=54.000000
s ce10.chrX             3852681 1 + 17718866 A
s caeRem4.Crem_Contig0   915166 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5907791 1 + 20921866 t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191977 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   83127 1 -   343467 A
i caeJap4.Scaffold18142 C 0 I 612
e cb4.chrX              8975960 658 + 21540570 I

a score=-69.000000
s ce10.chrX             3852682 1 + 17718866 A
s caeRem4.Crem_Contig0   915167 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 582
s caeSp111.Scaffold630  5907792 1 + 20921866 c
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191978 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I

a score=8216.000000
s ce10.chrX             3852683 488 + 17718866  
s caeSp111.Scaffold630  5907793 454 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2191979 501 +  4147112  
i caePb3.Scfld02_0      C 0 I 277
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I
e caeRem4.Crem_Contig0   915168 582 -  4500979 I

a score=462.000000
s ce10.chrX             3853171 22 + 17718866 ATTTTTTGAATAAGATAATTTT
s caeSp111.Scaffold630  5908247 22 + 20921866 ttttttgttgtagAAAGATTTT
i caeSp111.Scaffold630  C 0 I 289
e caePb3.Scfld02_0      2192480 277 +  4147112 I
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I
e caeRem4.Crem_Contig0   915168 582 -  4500979 I

a score=0.000000
s ce10.chrX             3853193 748 + 17718866  
e caePb3.Scfld02_0      2192480 277 +  4147112 I
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I
e caeSp111.Scaffold630  5908269 289 + 20921866 I
e caeRem4.Crem_Contig0   915168 582 -  4500979 I

a score=91.000000
s ce10.chrX             3853941 1 + 17718866 T
s caePb3.Scfld02_0      2192757 1 +  4147112 T
i caePb3.Scfld02_0      I 277 C 0
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I
e caeSp111.Scaffold630  5908269 289 + 20921866 I
e caeRem4.Crem_Contig0   915168 582 -  4500979 I

a score=1184.000000
s ce10.chrX             3853942 5 + 17718866 TGACC
s caeRem4.Crem_Contig0   915750 5 -  4500979 TAACC
i caeRem4.Crem_Contig0  I 582 C 0
s caePb3.Scfld02_0      2192758 5 +  4147112 TGACC
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I
e caeSp111.Scaffold630  5908269 289 + 20921866 I

a score=10508.000000
s ce10.chrX             3853947 69 + 17718866 ACTGATCGTTATCAGAACCTTTT---------------------TATAATGAACAGCTGTGGTAGTCAAGGATCAG-AGAGAGAAAGAGGG
s caeRem4.Crem_Contig0   915755 71 -  4500979 ATTGATTCTTGacaaagtgattttttatct--------------ATCATTCAACAAATGAGATCTTTGGggatcag-agaaaaaag-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5908558 89 + 20921866 ATTGATTGCTATCAGAGgattttttcctcttcttttttcttccattcaatCAGCTGCTTAGATCTTTGAggatcagaaagaaaagagag--
i caeSp111.Scaffold630  I 289 C 0
s caePb3.Scfld02_0      2192767 71 +  4147112 ATTGATTGCtatcagaagatttttttt-----------------ttcaatcagcaGCTGGGATCTTTGAGGACCAG-AGTAAAAAAGAG--
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18142   83128 612 -   343467 I
e cb4.chrX              8975960 658 + 21540570 I

a score=354.000000
s ce10.chrX             3854016 11 + 17718866 AAAAGGGGAGC
s caeJap4.Scaffold18142   83740 11 -   343467 AAAATCAGAAC
i caeJap4.Scaffold18142 I 612 C 0
e caePb3.Scfld02_0      2192838  0 +  4147112 C
e cb4.chrX              8975960 658 + 21540570 I
e caeSp111.Scaffold630  5908647  0 + 20921866 C
e caeRem4.Crem_Contig0   915826  0 -  4500979 C

a score=338595.000000
s ce10.chrX             3854027 695 + 17718866  
s cb4.chrX              8976618 714 + 21540570  
i cb4.chrX              I 658 C 0
s caeRem4.Crem_Contig0   915826 666 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5908647 703 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2192838 661 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   83751 698 -   343467  
i caeJap4.Scaffold18142 C 0 I 211

a score=29412.000000
s ce10.chrX             3854722 82 + 17718866 CAGCGACCGACGGGTCATGATACTTATTGAAAAATGCTGCAGCATGATTGGGTCA--------GCCA--ACCTACTTTCTTTATTTCCAGAG
s cb4.chrX              8977332 92 + 21540570 CGGCAAGGGGAGGGTCATGATagtcattgaaaaatattgttgtATGATTGGCTCTGAGACTCCGCCAACTTCAAGTTTTGTTCTTCCTAGGG
i cb4.chrX              C 0 I 329
s caeRem4.Crem_Contig0   916492 82 -  4500979 CGGCGA-CGGAGGGTCATGATAcgtattgaaaaatattgcaGCATGATTGCCTTCAACAATGCGCCACcatc---------tttttccagaa
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5909350 80 + 20921866 CGACAG-CGGAGGGTCATGAtacttattgaaaaatattgcaGCATGATTGGCTC---------TCCA--GACAAAgcatctttctcttcaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2193499 87 +  4147112 CGGCAG-CGGAGGGTCATGAtacttattgaaaaatattgcagCTTGATTGGCTCAGACGACG-tcca---acaaactttttttctcccagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   84449 211 -   343467 I

a score=-1104.000000
s ce10.chrX             3854804 2 + 17718866 GT-
s caeRem4.Crem_Contig0   916580 2 -  4500979 -tt
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5909430 2 + 20921866 ct-
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2193586 2 +  4147112 AT-
i caePb3.Scfld02_0      C 0 I 227
e caeJap4.Scaffold18142   84449 211 -   343467 I
e cb4.chrX              8977424 329 + 21540570 I

a score=2251.000000
s ce10.chrX             3854806 10 + 17718866 CTCTAATTTT
s caeRem4.Crem_Contig0   916582 10 -  4500979 ctttaatttt
i caeRem4.Crem_Contig0  C 0 I 146
s caeSp111.Scaffold630  5909438 10 + 20921866 ttttaatttt
i caeSp111.Scaffold630  I 6 C 0
e caePb3.Scfld02_0      2193588 227 +  4147112 I
e caeJap4.Scaffold18142   84449 211 -   343467 I
e cb4.chrX              8977424 329 + 21540570 I

a score=242.000000
s ce10.chrX             3854816 4 + 17718866 GAAA
s caeSp111.Scaffold630  5909448 4 + 20921866 aaaa
i caeSp111.Scaffold630  C 0 I 257
e caePb3.Scfld02_0      2193588 227 +  4147112 I
e caeJap4.Scaffold18142   84449 211 -   343467 I
e cb4.chrX              8977424 329 + 21540570 I
e caeRem4.Crem_Contig0   916592 146 -  4500979 I

a score=0.000000
s ce10.chrX             3854820 788 + 17718866  
e caePb3.Scfld02_0      2193588 227 +  4147112 I
e caeJap4.Scaffold18142   84449 211 -   343467 I
e cb4.chrX              8977424 329 + 21540570 I
e caeSp111.Scaffold630  5909452 257 + 20921866 I
e caeRem4.Crem_Contig0   916592 146 -  4500979 I

a score=1085.000000
s ce10.chrX             3855608 109 + 17718866 TGTTTTTTCCCTAATAAGATG-ATTAAAGATAAAAAATAGGATCATGCCCAGAACAGTAAATTAACAGTTTAAATTAAAATTTTTATCTTGACGAATCACTAAATTTCCC
s cb4.chrX              8977753  94 + 21540570 tattttttccgaaaCAAAACGGATCATTCACAAAA-----TATCACAagctgaatattcaaaaaacaactgaaatgGAAGTTTCTA--------GACTActaa---tcct
i cb4.chrX              I 329 C 0
e caePb3.Scfld02_0      2193588 227 +  4147112 I
e caeJap4.Scaffold18142   84449 211 -   343467 I
e caeSp111.Scaffold630  5909452 257 + 20921866 I
e caeRem4.Crem_Contig0   916592 146 -  4500979 I

a score=-259.000000
s ce10.chrX             3855717 12 + 17718866 ---AAGATTTCGCCT
s cb4.chrX              8977847 15 + 21540570 gaaaaaaatgagtat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   916738 13 -  4500979 --aaaaagttgacaa
i caeRem4.Crem_Contig0  I 146 C 0
e caePb3.Scfld02_0      2193588 227 +  4147112 I
e caeJap4.Scaffold18142   84449 211 -   343467 I
e caeSp111.Scaffold630  5909452 257 + 20921866 I

a score=-5271.000000
s ce10.chrX             3855729 57 + 17718866 AAAAAAAGGACCAATATGAAAAGTTGAAAACACAGAACGACGCGGCTCGGCTTTCTC-----
s cb4.chrX              8977862 42 + 21540570 -----tGGTTGGGAAACGAA---------AAACAGA-GCACTCCACGAGGCCTCTTC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   916751 55 -  4500979 -----agaAAAGGACCCAAAA--TTGAGGAAACAAATGCACACTAAGAtagctcttcttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2193815 45 +  4147112 aaaaaaagttgggataaaaaaagttgaa-aaacaaataga---gAAGAG-------------
i caePb3.Scfld02_0      I 227 C 0
e caeJap4.Scaffold18142   84449 211 -   343467 I
e caeSp111.Scaffold630  5909452 257 + 20921866 I

a score=1257.000000
s ce10.chrX             3855786 6 + 17718866 CTCTGC
s cb4.chrX              8977904 3 + 21540570 ---GTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   916806 6 -  4500979 cttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5909709 6 + 20921866 ctGTGC
i caeSp111.Scaffold630  I 257 C 0
s caePb3.Scfld02_0      2193860 6 +  4147112 CTCTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   84449 211 -   343467 I

a score=118248.000000
s ce10.chrX             3855792 237 + 17718866 CTA--CTTTTAGTTTTGTCCTACATCATAAACA--AGGGCCAACTCCCGAATCTGCTTATCTCGATACCCGCATCTCTTTTCC-------------TTTTTAGCCACCCCTTTATTGCATTATCCCACACTTTCATTGCACTGCTTCATCTTGAGAAAGCAAATGG---ATGCGATGGGCTGGGATGGCCGAGTTGAATTG-----------GAAAGGTCTGATTTTGGGT---CCGATGAGAGTGGAAAAAC----ATTACTGACTAATTTAGA
s cb4.chrX              8977907 229 + 21540570 CTA--CT-----TTTTGCC---CATCATGCACA--AGGTCCAACTCCCGAACCAGCTTATCTCGATACCCGCATCTCTTCCTTTGCTTCTTACCACTTTTTAGTCACCCCTTTATTGCATTATCCCACACTTTCTATGC---GCTCAATCTTGAGAAGACAAATTG---ATG-GCCG-----GAATGAGAAAgg-aaattcgtaaaaaaaaagaaagcccCAA---------------------TTGAATGATAAAGACTAGAACTTTGATTCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   916812 214 -  4500979 cta--cT-----ATTTGTCCGACATCATAGACA--AGGGCCAACTCCCGAATCTGCTTATCTCGATACCCGcatctcttctcct------------tttttagtCACCCCTTTATTGCATTATCCCACACTTTCAATCCGTTGCTCAATCTTGAGAAAGCAAATGG---ATA-GATGACC--GGATGGGAAAGT-GAATTCG----------GAAGGGCCAGA---------------------TGGAAAAATGA--CCTAGTGTCTTCTTTTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5909715 214 + 20921866 CTA--GT-----TTTTATCCTACATCATAGACA--AGGGCCAACTCCCGAATCTGCTTATCTCGATACCCGcatctcctcttcctc----------tttttagTCACCCCTTTATTGCATTATCCCACACTTTCAATCCACTGCTCAATCTTGAGAAAGCAAATGG---ATG-GATGGAC--CGATGTGAAAGT---ATCG-----------GAAGGGTccga---------------------ttgaaaaaacacttttacTACGTT-TTCTAA
i caeSp111.Scaffold630  C 0 I 91
s caePb3.Scfld02_0      2193866 194 +  4147112 CTACttt-----ttttGTCCTACATCATAGACAAGAGGGCCAACTTCCGAATCTGCTTATCTCGATACCCGCATCTCTTTCTACTC----------TTTTTAGTCACCCCTTTATTGCATTATTCCACACTTTCAATCCACTGCTCAATCTTGAGAAAG-----------TA-GATGGAC--TGATGCGAAAGT-TAATTT-----------GAAGGGCGCCG---------------------TGTAAAAA-------------------CTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   84660 240 -   343467 CTA--GTGTCAGTTTTGCCCCACATCATAGAAA-----GCCTACTCTTGAATCTGCTTATCTCAATACCCGCAtctcttttccttttcc-------tttttagtCACCCCTTTATTGCATTATCCCACACTTTCAATTCGCTGCTCAatcttgagaaaaaaaaaagcaaatg-gaCGGAT--GAATGGCAAAGT-AATTTTG----------GTTGGGCATGGGGGTCGGTCGGCCTGTCGAAACGGAGAAAA----ATTGTtggcaagttt---
i caeJap4.Scaffold18142 I 211 C 0

a score=-20971.000000
s ce10.chrX             3856029 90 + 17718866 TGTGTGGTATTTTATAACTATTTTCATA-----------GC---------TTTTTTAATCATTTTAGTATATATAAAGTTTTATGAAACAGCTTAAATTTTTTTTTTCAC
s cb4.chrX              8978136 80 + 21540570 -----------CTTCAACC----------CAAAATTATTGC-------AGTTTTTCAAGCTTcttgaaagctatcaaaattta--aagattcaaaaattaccattATCAC
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   917026 97 -  4500979 -----------CCCGGacctttttgaaaacagaaatactACCCGCTTAATCATTTCAGTGACCTTGAGTTTTAACAAGCATTC--Aggatgaaaataatttttttttaac
i caeRem4.Crem_Contig0  C 0 I 51
s caePb3.Scfld02_0      2194060 61 +  4147112 -----------TTGTGACCACTTTTGTATAAGAAATAGTAC---------TACtt-----------------------actca--aaaaagaaaatgatgttcttc----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   84900 29 -   343467 -------------------------------------------------ttttttcggttgtCT--------------ACTTC--A----TCAAATAG------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5909929 91 + 20921866 I

a score=0.000000
s ce10.chrX             3856119 9 + 17718866 TGATTGCAA
e caePb3.Scfld02_0      2194121 0 +  4147112 C
e caeJap4.Scaffold18142   84929 0 -   343467 C
e cb4.chrX              8978216 10 + 21540570 I
e caeSp111.Scaffold630  5909929 91 + 20921866 I
e caeRem4.Crem_Contig0   917123 51 -  4500979 I

a score=-6898.000000
s ce10.chrX             3856128 37 + 17718866 ----ATAAAAACGTATTTGAGAAAAAAG---------GTAACTTTAAAAG
s cb4.chrX              8978226 41 + 21540570 ---------ATGATGTTTGAAACCGAAAACAATAAAACTAACTTCTTCAA
i cb4.chrX              I 10 I 3
s caeSp111.Scaffold630  5910020 35 + 20921866 ----CTTAAAACATGTTTCATAAtacaa-----------aacttcaaaag
i caeSp111.Scaffold630  I 91 I 22
s caePb3.Scfld02_0      2194121 34 +  4147112 -----caaaatcaaattttgaaaaaaaa-------aactaacttct----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   84929 24 -   343467 TAGTCGTACAACAAACTCCAAAAA--------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   917123 51 -  4500979 I

a score=-4178.000000
s ce10.chrX             3856165 24 + 17718866 CCAATTGGAAAGCAGTTTGTTTTC
s cb4.chrX              8978270 22 + 21540570 CCACCACTGGAGGTGGCGGTTC--
i cb4.chrX              I 3 I 10
s caePb3.Scfld02_0      2194156 24 +  4147112 caactggttcatcttctggttcta
i caePb3.Scfld02_0      I 1 I 16
s caeJap4.Scaffold18142   84953  8 -   343467 -------GGgagcaa---------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5910055 22 + 20921866 I
e caeRem4.Crem_Contig0   917123 51 -  4500979 I

a score=250.000000
s ce10.chrX             3856189 8 + 17718866 AAAAGACT
s caeRem4.Crem_Contig0   917174 8 -  4500979 aaaaaact
i caeRem4.Crem_Contig0  I 51 C 0
s caePb3.Scfld02_0      2194196 6 +  4147112 -tgggat-
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18142   84961 8 -   343467 aaaaaact
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8978292 10 + 21540570 I
e caeSp111.Scaffold630  5910055 22 + 20921866 I

a score=86674.000000
s ce10.chrX             3856197 172 + 17718866 CACCTCTTCTTCCTCTT-------------CTTCGACCACTT---------CTTC---TTCTGGGATTACTTCGTCTTCAGTGATGATCCTCTTCACCGGTCGACTTTTTCGTTTGCTGGCTCCCGACAAAGATGGACTGACACGTTCTGTGACAAGGCAACCACCATTGGCTTCTGAAAAAT-------GTGCACAAG----AAATA
s cb4.chrX              8978302 161 + 21540570 --------------------------TGGATTACTTCTGCTT---------CTCC---TTCTT------CGTCGTCTTCTGTGATAATCCTTTTCACCGGCCGACTTTTCCGTCGACTCGAACCCGACAAAGATGGACTGACACGTTCTGTGACAAGGCAGCTGCCATTGgactctgaaaaat---gggaCAATACATGGGATTGTTG
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   917182 174 -  4500979 aacttcttct----------------agaacttcttctgctt---------ctccagggctta------cttcttcttcAGTGATAATCCTTTTCACCGGTCGACTTTTCCGTTTACTGGCACCCGACAAAGATGGACTGACACGTTCTGTGACAAAGCAACTACCATtggcttctgaaaaaa---tgaagagtacGAATCAAAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5910077 200 + 20921866 CACCTCTTCTCGTTCTGGCTCCGGCTCGGGCTCCTGCTCTTG----CTCCACTTC---TTCTGGgattacttcttcttcattgatGATCCTTTTCACCGGTCGACTTTTCCTTTTACTGGCACCCGACAAAGATGGACTGACACGTTCTGTGACAAGGCAACTACCATTggcttctggaaaaaagacgaagagTTCAAGTCA-CAATG
i caeSp111.Scaffold630  I 22 C 0
s caePb3.Scfld02_0      2194202 187 +  4147112 tacttcttcttctcctatcGCT-GCAATGACTGCTGCTGTTGTAGCCGttacttc---atctt------cttcctcttcagtGATAATCCTTTTTACCGGCCTACTTTTCCGTTTACTGGCACCCGACAAAGATGGACTGACACGTTGTGTGACAAGGCAACCATTAGGAACATCTGAAACGC----------TTCGAATAC-AATTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   84969 139 -   343467 -------------------------------------------------aacgTC---TTCTGGGA---TTACTTCTTCAGTGATAATCCTTTTCACTGGTCGACTTTTCCGTTTGCTGGCACCGGACAGAGATGGACTGACTCGTTCTGT---CGAGTGACAGCCATTTGCTTCTGAAAAAT----ACATAATataaaca-------
i caeJap4.Scaffold18142 C 0 I 437

a score=39611.000000
s ce10.chrX             3856369 100 + 17718866 TGGAGCAG--------------CA------TCTAGTCAG------------AAAAG--TTCCTTTTTTGAGCAATCAGAACATGTTATCTCATTTTCACGATGCCAATCAAATTCGCG----CA-G--------AAGTTTTTTTTTT
s cb4.chrX              8978463 113 + 21540570 TGCGACAT--------------CA------GCCAATTCA---------TTTGAAGA--TCCCC--CTTGGCAAatctaaacattttatctcattttcgcAATGTCAATCAAATTCGCAGCATCA-GCAAAAGCgaagagtttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   917356 120 -  4500979 TGCATCAC--------------AGTCGCATGTCAATTTA--TCCCTTTTTTGCTTG--TGCCCTACTCGGGCAATCTGAAcattttatctcattttcacgATGCCAATCAAATTCGCG----CA-Gcaga----gagtttttttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5910277 125 + 20921866 TGCATCAGTAGCATCTagtcaaaa------accaattta--tcttttttttgcatg--TGCCCTACTTGGCCaatctgaacattttatctcattttcacGATGCCAATCAAATTCGCG----CAggcagt----gagtttttt----
i caeSp111.Scaffold630  C 0 I 380
s caePb3.Scfld02_0      2194389 114 +  4147112 TGCATCAG--------------AA------GTCaatttatctcttttttttgcatttctgcCCTACTCGGGCaatctgaacattttatctcattttcacGATGCCAATCAAATTCGCG----CA-GCAGT----GAATTTTTT----
i caePb3.Scfld02_0      C 0 I 524
e caeJap4.Scaffold18142   85108 437 -   343467 I

a score=600.000000
s ce10.chrX             3856469 2 + 17718866 CG
s cb4.chrX              8978576 2 + 21540570 cg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   917476 2 -  4500979 cg
i caeRem4.Crem_Contig0  C 0 I 231
e caePb3.Scfld02_0      2194503 524 +  4147112 I
e caeJap4.Scaffold18142   85108 437 -   343467 I
e caeSp111.Scaffold630  5910402 380 + 20921866 I

a score=-4316.000000
s ce10.chrX             3856471 893 + 17718866  
s cb4.chrX              8978578 839 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2194503 524 +  4147112 I
e caeJap4.Scaffold18142   85108 437 -   343467 I
e caeSp111.Scaffold630  5910402 380 + 20921866 I
e caeRem4.Crem_Contig0   917478 231 -  4500979 I

a score=-7788.000000
s ce10.chrX             3857364 166 + 17718866 TTTTGCTCAAAAGTGCAAAAAGTTTCACTTTTTCATCAAAAAACCCATACAA---TTTTTGAAAAACGCCTAATTTTTTTTTTTTTTTACACAAGTGAATTTGGATTTTAAAACTGCAAAAAAAGAGCATCTGACCAACATTTTTAAAAAA-TTGTTGCGTCCAGGTAGA
s cb4.chrX              8979417 136 + 21540570 -----------AGTATGagcaattctaattttttatagaaCTTGT-CTGCCGTccaactagaaaaaattatcacCCAATATAACTATTCCC-----------GTTTCTctcaa---taaaaaaatgttgctcCACGGAC------ACGACA-CTGCAAC-CTAAGAAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   917709 114 -  4500979 -----------------------------TTTCGATGGAAAGTACATtacag----------aaaagttttcatttgttGTCATCATACCCAAAAcg-ctttgttttttt---------aaagactttttttCACAAGG------AAAACATTTGTTTC-CCTAGGTGCA
i caeRem4.Crem_Contig0  I 231 C 0
e caePb3.Scfld02_0      2194503 524 +  4147112 I
e caeJap4.Scaffold18142   85108 437 -   343467 I
e caeSp111.Scaffold630  5910402 380 + 20921866 I

a score=27966.000000
s ce10.chrX             3857530 78 + 17718866 ---CAATCATCGCCT-ATAACATACCGTT---GTCATTAGCT---TTTCACG------AAAATCAGTCA-AAATGAATTATTACAGCAACG--CGCT
s cb4.chrX              8979553 91 + 21540570 CATCGATCATCACCT-CCGACCCGTTGGTTGGCtcgtttctc---ttttctccttgaaaaaatcagtcaaGGATGAATGATTACGACACtg--agtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   917823 82 -  4500979 CATCGATCATCACCT-CCGACCTCtcgct---ctcttttttc---ttctctc------gaaATCAGTCAGAGATGAATTATTACGACAAGA--AATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5910782 79 + 20921866 ---CGATCATCACCTACGACCCcgtttct---ctcgtttttc----tctctc------gaaaTCAGTCAGGAATGAATTATTACGGCAACa--tgtt
i caeSp111.Scaffold630  I 380 C 0
s caePb3.Scfld02_0      2195027 84 +  4147112 ---CGATCATCACCT-CTGTCCCGTCGgt---ctcacttttcttcttctctc------gaaATCAGtcagaaatgaaatattaCGACAacgcttttt
i caePb3.Scfld02_0      I 524 C 0
e caeJap4.Scaffold18142   85108 437 -   343467 I

a score=43204.000000
s ce10.chrX             3857608 183 + 17718866 TGATTTGTGACCAGACTCCG-----AAGAGT-------CGACAATTAGAAAAAGAAACGGATATTGATAAAGCATCACCTACCGAATACTTCTGCGAGAAATTGAAACGTGTTCT---------CCAAGGTGTTCATATTTCTTGCATTGATGATATGTG-TTGTGAGGATG-AT--GATAGAGACTTT-TTACGTCTGAAAC---AGAGAC
s cb4.chrX              8979644 182 + 21540570 tgatttttgactctttttttCGCGAGAAGATGGAcc--aagaaaattaaaaaag------------ataaTCA----CTTACCAAAAACATCTGCAAGAAACTGGAACGTTCTCT---------CCATAGAGTTCATATTCCTTGCATTTATGATATGTA-TAGGAATTTTGAAGCAACGGGAGACTTTATTttgtctgcaaa-a-aaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   917905 179 -  4500979 TGATTTGTGACTagactttt-----gaaaatga-----tggagGTTTAAAAGAGAT------AATCATAATCA----CTTACCAAATACTTctgttaaaaattgaaacgcgTTTT---------CGAAACTGTTCATCTTTCTTGCATTGAGGATATGTG-TTGAATTGTTGTAT--ACCGGAGACTTTattatgtctgaaaa-atgaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5910861 179 + 20921866 tgatttttgactAGACTATA-----GACGATTGAGctcacatttttcataga----------aatcgaaaataat--cTTACCAAATATTTCAGTTAGAAATTGTAACGTGTTCT---------CCatagaattcatttttcttgcatTGATGATATGTG-AAGAGTTATTGTAA--AGAACAGAAGGTATTTTGTCTGAA---A-GATGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2195111 184 +  4147112 tgatttgtgaCTAGGCTCTA-----g------------agattttttagaaaagaa-----taGTGATAAAGAAG--CTCACCAAATACATCtgcaaaaagttgaaaagtatTCTGAATGTCGGTCAGTTTATCCATCTCCTTTGCATTGGTGATATGTG-AAGGGTTGTTGAAC--AGCAGAATTTTTATTATGTCTAAAAATA-AGCAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   85545 153 -   343467 tgatttttaaccac------------------------caaaaagtagaaaaagaa------A--------------CTCACCGAATACCCCGGCGAGAAACTGAAAAGTGTTCT---------CAAAGCTGTTCATTTCTGATGCATTGATGATATGTGATTGTGTTGATTAAA--ATGCGgaactct-ttttttcttcaag---ggtgac
i caeJap4.Scaffold18142 I 437 I 36

a score=-11568.000000
s ce10.chrX             3857791 42 + 17718866 ACT-GTTGGATAAGAC--CG-ACAGAGAATGTGGTTTTGA------TAGAT--G
s cb4.chrX              8979826 40 + 21540570 gat-atgagctaatattttgtaaaaataatCAA-----GA------GGGGC--G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   918084 33 -  4500979 gtt-aagaAACA---------GAGAGGAATGAA-----TA------AGCATCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5911040 37 + 20921866 ACTGTAGAGATTGGAC-TTGTAAAAAGAATGT--------------aatat--g
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2195295 44 +  4147112 ACT-CAGAGACAATAA--GGTATAAAGAAAGTG-----gaatgaagaatat--g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   85698 36 -   343467 I

a score=305643.000000
s ce10.chrX             3857833 537 + 17718866  
s cb4.chrX              8979866 618 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   918117 594 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5911077 553 + 20921866  
i caeSp111.Scaffold630  C 0 I 18
s caePb3.Scfld02_0      2195339 548 +  4147112  
i caePb3.Scfld02_0      C 0 I 139
s caeJap4.Scaffold18142   85734 549 -   343467  
i caeJap4.Scaffold18142 I 36 C 0

a score=-993.000000
s ce10.chrX             3858370 5 + 17718866 GTCCC--
s cb4.chrX              8980484 5 + 21540570 GTGAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   918711 5 -  4500979 atgaA--
i caeRem4.Crem_Contig0  C 0 I 151
s caeSp111.Scaffold630  5911648 5 + 20921866 GTGAC--
i caeSp111.Scaffold630  I 18 C 0
s caeJap4.Scaffold18142   86283 5 -   343467 --GACTC
i caeJap4.Scaffold18142 C 0 I 4
e caePb3.Scfld02_0      2195887 139 +  4147112 I

a score=-18563.000000
s ce10.chrX             3858375  72 + 17718866 T-----------GTTTTTCGCATCACTTT-----------TCTTCTATTATCTAA---------------------------------GTTATTCTAATATCTAGGAACGAAACT---------------------------AGGGTAAAATCT
s cb4.chrX              8980489 125 + 21540570 ------------AACTATCtatgcaatttttttgatgagtaTTAGGgtaaacaaaatttgaaag-------gtgGACC----------GCAGTTCGAAAAATTAGCACTCAGTTTTCTTGAAATATACTGTATCGGGACTCCAGCCTAAAATGA
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold630  5911653 114 + 20921866 TAATTT----CGAATTGTATCAGTACTTTAAAATCTGAA-ACCGGTGTAAACAAAAGTTCAGAACT---ATATGTACCTGTTA--CCAGCCATTTgcatatttaaaaataagatttc------------------------------aaaatga
i caeSp111.Scaffold630  C 0 I 16
s caeJap4.Scaffold18142   86292 102 -   343467 -TATTTTTAACTAATTATCATTGTTATTTA----------AAAATGGTAAACAAAAAGTTCTAACTTTAAAATTCATCAGGTGGCTCAAGAATTCCACTGATCAACAA--AAATT---------------------------------------
i caeJap4.Scaffold18142 I 4 C 0
e caePb3.Scfld02_0      2195887 139 +  4147112 I
e caeRem4.Crem_Contig0   918716 151 -  4500979 I

a score=-455.000000
s ce10.chrX             3858447 9 + 17718866 ----ATCGCGTCC
s cb4.chrX              8980619 9 + 21540570 ----atcgaattc
i cb4.chrX              I 5 I 30
s caeRem4.Crem_Contig0   918867 9 -  4500979 ----atcaagTCC
i caeRem4.Crem_Contig0  I 151 I 5
s caeJap4.Scaffold18142   86394 9 -   343467 GTTGGTTGG----
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2195887 139 +  4147112 I
e caeSp111.Scaffold630  5911767 16 + 20921866 I

a score=571499.000000
s ce10.chrX             3858456 1202 + 17718866  
s cb4.chrX              8980658 1200 + 21540570  
i cb4.chrX              I 30 I 47
s caeRem4.Crem_Contig0   918881 1111 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5911783 1124 + 20921866  
i caeSp111.Scaffold630  I 16 C 0
s caePb3.Scfld02_0      2196026 1236 +  4147112  
i caePb3.Scfld02_0      I 139 C 0
s caeJap4.Scaffold18142   86403 1158 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-954.000000
s ce10.chrX             3859658 39 + 17718866 CGCGTGGAAAGCGTGGGGGGGGGCATGACTAAATGGACT---------
s caeRem4.Crem_Contig0   919992 20 -  4500979 -------------------ggggggggtctaAATGGACG---------
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  5912907 16 + 20921866 -----------------------caaGTCTGAATGGAAG---------
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_0      2197262 16 +  4147112 -----------------------CACGTCTAAATGGACG---------
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18142   87561 28 -   343467 --------------------AGCGTTGACTAAATGGGCCGGCCGTCAC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8981858 47 + 21540570 I

a score=16654.000000
s ce10.chrX             3859697 13 + 17718866 CTCATTTGACTAT
s cb4.chrX              8981905 13 + 21540570 CTCATTTGACTAT
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   920033 13 -  4500979 CTCATTTGCCTAT
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  5912947 13 + 20921866 CTCATTTGACTAT
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      2197301 13 +  4147112 CTCATTTGCCTAT
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18142   87589 13 -   343467 CTCATTTGACTAT
i caeJap4.Scaffold18142 C 0 I 400

a score=6286.000000
s ce10.chrX             3859710 33 + 17718866 TCACCGTGCTAACAATGTGCGGCCAA-AAGTAAA-
s cb4.chrX              8981918 24 + 21540570 TCACAATG-------TGTCAGGTAAA---ATAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920046 34 -  4500979 TCACCGTGCCAACAATGTGAGGTAAAGAGGTAGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5912960 33 + 20921866 TCACCGTGCCAACAATGTGAAATCTA--AATTGGA
i caeSp111.Scaffold630  C 0 I 449
s caePb3.Scfld02_0      2197314 33 +  4147112 TCACCGTGCCAACAATTTTAGGTGAA--AGTAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   87602 400 -   343467 I

a score=-1841.000000
s ce10.chrX             3859743 6 + 17718866 AGTTGA-----
s cb4.chrX              8981942 1 + 21540570 -----G-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920080 6 -  4500979 -----AGCAGA
i caeRem4.Crem_Contig0  C 0 I 382
s caePb3.Scfld02_0      2197347 6 +  4147112 AATTGG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeSp111.Scaffold630  5912993 449 + 20921866 I

a score=-1617.000000
s ce10.chrX             3859749 10 + 17718866 CATTTCGAGA------
s cb4.chrX              8981943  5 + 21540570 -----CAATA------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2197353 10 +  4147112 ------GGTATCTAAA
i caePb3.Scfld02_0      C 0 I 482
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeSp111.Scaffold630  5912993 449 + 20921866 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=-406.000000
s ce10.chrX             3859759 95 + 17718866 TTGAGTTGGCAAAGAGCGAGTTGCGTTGAAAATGAGCA--TTTAAAAGGG---AAAAAACTGTACATTTCTATCGTACACTCGTGTTGATGTGAAATGTA
s cb4.chrX              8981948 56 + 21540570 TTTTCCTGGC----------------------TGAGCAGCTATAGCAGGGAATAAAAAACTG----------------------ATTCATGAAAAGTGTA
i cb4.chrX              C 0 I 122
e caePb3.Scfld02_0      2197363 482 +  4147112 I
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeSp111.Scaffold630  5912993 449 + 20921866 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=0.000000
s ce10.chrX             3859854 153 + 17718866 ATTTTCACATTCACAGTTCTCTTCATCACAACATTAAACTTTTAATATAATTCAACTGGTGAGGTTTGAAATATCATTCGATTTATTTGAGAATTGATTGAATTTAAAATAGCTATCAAAATTTGTATAAAATTAGAAATTATTTAAAACAGT
e caePb3.Scfld02_0      2197363 482 +  4147112 I
e caeJap4.Scaffold18142   87602 400 -   343467 I
e cb4.chrX              8982004 122 + 21540570 I
e caeSp111.Scaffold630  5912993 449 + 20921866 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=-5791.000000
s ce10.chrX             3860007 712 + 17718866  
s cb4.chrX              8982126 397 + 21540570  
i cb4.chrX              I 122 C 0
e caePb3.Scfld02_0      2197363 482 +  4147112 I
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeSp111.Scaffold630  5912993 449 + 20921866 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=131.000000
s ce10.chrX             3860719 4 + 17718866 TTGA
s cb4.chrX              8982523 1 + 21540570 ---a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5913442 4 + 20921866 TTGG
i caeSp111.Scaffold630  I 449 C 0
e caePb3.Scfld02_0      2197363 482 +  4147112 I
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=1196.000000
s ce10.chrX             3860723 15 + 17718866 AATGAAA-ATTAAGAG
s cb4.chrX              8982524 15 + 21540570 aatgaaa-attaatgG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5913446 16 + 20921866 AATAAAATCtcgatga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2197845 14 +  4147112 AATagga--atgatga
i caePb3.Scfld02_0      I 482 C 0
e caeJap4.Scaffold18142   87602 400 -   343467 I
e caeRem4.Crem_Contig0   920086 382 -  4500979 I

a score=4961.000000
s ce10.chrX             3860738 25 + 17718866 AATGAAAATGTAAAATGC-------CAAGTAA
s cb4.chrX              8982539 15 + 21540570 ----------AAAGATGC-------CAAGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920468 27 -  4500979 -----AATGGAAAGTTACAAACTGACAAATAA
i caeRem4.Crem_Contig0  I 382 C 0
s caeSp111.Scaffold630  5913462 25 + 20921866 aatgaaacattgaaatgc-------CAAGTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2197859 25 +  4147112 aaaaaaattgggaaatgc-------CAAGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   87602 400 -   343467 I

a score=148161.000000
s ce10.chrX             3860763 370 + 17718866 AGAATGTCTCTTTTTTTT---GTCTTTCTTTG-TCAACTGATTTGATACGTA--T--GTACG--------TTGTCC-TAATTGATCAATACT-------CGAGTTGAATTT--TTGCGCAAGA----ACGGTGATTAG------TTT-----A-------GAACAGT--ATGGCCAACGCATGTAAAACCAA--AAAA---TA-CGAATAACGTTC-TCTAATTATCAA-TATCAC-CGTC-AAGTTTTTATTTCG-TA-----TTCGATA--TGTCTCTGTACCTATCATAATGATTATCACTTG-----TCTTTTTCAATTTTCTC-CTCGCCA-GGTAAGCTGATGTGTAAAGTGACCTAACACACA--TGGTGAGAAGGAAAAAAATAGAAAA-AGTAAGAGG-AAAAATTGAGTATTTC---GAAGAGAGATGCAAAGTAACTGAAG
s cb4.chrX              8982554 394 + 21540570 GGAATGTCTCTTTTTTAGTCAGTCTttcgttg-tcaactgatttgATACGTCGAT--GT-TGTATTCTGATTGCCC-TAATTGATCGATACT-------CTCCTCGAGTTGAATTTGATTTTG------GTTGATTAGAA----TTC-----GTGGTAACAAACTGTACACGTTAGg----gatcaaag--a--aaaa------agaatggcGTTCAGTTAATTATCAA-----ACACGTCTAAGTTTTGATTTCACTCGTTGTTTCGACACCGTCTTC--TACCTCCCATAGTGATCACCGCTTGTCGCATTTTTTGTCGCCTCTTC-ATCGCCC-GGTATGCTGATGTGTAAAGTGTTTT-----ATA--TGGttagaagaagacgtcgaaaaaA-GGTAAGAGGCAAAAATGGAGTATTTCATGGAGAGAAGATGCAAAATAACTAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920495 383 -  4500979 GGAAT-TCTCTATTTT-----GTCTTTCATTG-TCAACTGATTTGATACGTC-----GT-CGTATTCAATTTGCCC-TAATTGATCAATACT-------CGAGTTGAGACCCATTTGACAAGG----ACGGTGATTAGAACAGTTTC-----ATGGGCA-GAACTGT--ATGATAAGT-CAGATGAATGTAG--AAAA------CGAATAGCGTTC-TCTAATTATC-------ACTCGTc-aagttttgatttca-tcttTGTTTCCACACATCTCTCAGTACCCCCTATAGTGATCATCACTtgtcttttcgtttttcaccCCCTC-GTCA----GGTATGCTGATGTGTAAAGTGTCTTAACACACA--tggtgaaaagaaaaag----aaaaa-agtaagaggcaaaaattgagtatttc-----GGAGAGATGCAAAGTAACTGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5913487 382 + 20921866 AGACTGTCTCTTTAT------GTCTTTCTTTG-TCAACTGATTTGATATGTCGGTATGTACGTATTCTGTTTGCCT-TAATTGATCAATACT-------CGAGTTGAGATTAATTTGACAAGG----ACGGTGATTAGAACAGTTTTTGTCTATGGGTT-AAACTGT--ATGGCCGAC-TAGACAAGAGGAGTAAAAAATATACCGAATAGCGTTC-TCTAATTATC-------AT-CGTc-aagttttgatttca-tcgTCGTTTCGGCA---------------CTTCTATTGATCATCACTTG-----TCTTTTTACCCTCTTTTCATTTGCCAGGTATGCTGATGTGTAATATGTCTTAACACACA--tggtgagaagaa--------gaaaa-agtaagagGCAAAAATTGAGTATTTC-----GGAGAGATGCAAAGTAACTAAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2197884 366 +  4147112 AGAATGtctcttttt------gtctttctctG-TCAACTGATTTGATACGTC-----GTACGTATTCAATTTGACT-TAATTGATCAATACT-------TGAGTTGACTCCCATCTGACAAGG----ACAGTGATTAGAAA-----------ATTAGTA-GAACTGT--AT----GAC-TAGactaaagaag--aaaaattta-cgAATAACGTTC-TCTAATTATC-------AC-CGtc-aagttttgatttca-tcgTCGTTTCCACA---------------CTTATAGTGATCATCACTTGCCATTtctttttaccgcctttt-atCGCCCAGGTATGGTGATGTGTAAAGTGTTTTAACACACACCTGGTGAGAAGGC--------AAAAATAGTAAGAGGCAAAAATTGAGTATTTC-----GGAGAGATGCAAAGTAACTAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   88002 384 -   343467 agaatttctttttttttt---gtttctcttttCTCAACTGATTTGATACGTCG----GTATGAATTCTATGCGCCCTTAATTGATCAATACTTTTTTAATGAGATGAGATC-ATTAGGCAGTACAATACAACAagacaaaacagttt-----ttttttg-ataaagt--aCAGTAGGA----ACGAACGTTA--AAGT------AAAATACTCGTC-GTTAATTATCAACCATGATTAGCC-AAGTTTCGATTTCA-TCTC---TTCCGTA-------TAGAAC--CCTTTAGCGTTTATCagtcgtcgttttttttttggcaatttt---cgcCA-GGTATGCTGATGTGTAAAGTGTGTTAACAGACG--CGCATAAAGGAATGA-----GAAGA-AGTAAGGCACGAAAATTGAGTA---------TGCGAAATG----GTTACTGAAA
i caeJap4.Scaffold18142 I 400 I 29

a score=2939.000000
s ce10.chrX             3861133 14 + 17718866 AACAACTAACTGGG
s cb4.chrX              8982948  9 + 21540570 ---ACCTAACTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920878  9 -  4500979 ---ACCTGATCG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5913869  9 + 20921866 ---ACCTGACTG--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2198250  9 +  4147112 ---ACCTACCTG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88386 29 -   343467 I

a score=45586.000000
s ce10.chrX             3861147 121 + 17718866 CAAGGTCG-----------ACTTATCCCAATGCATA--TGGTGTGTTTTTA-------TTTTCTGAA----------T-----TGA---TCACTTCGCTTATCACTTGAC----------------TGCATAATCCC----------------------------GTCACTT-------GCCCATTGGTTAAACACATTACCGTAGTCAA
s cb4.chrX              8982957 148 + 21540570 -AAGGTCA-----------CCACAG--GACtgcatattt----ttgtttta-------ttttctcgaaatcatTACGGTTTTTTGA-GGTCATTTGAT-TATCACTTGAC----------------TGCATAATCCCCAT-------------------TGGGGTGGCCTCTCGCCCTGGTTTATTGGTAAAACGAATTACCGTAGTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   920887 136 -  4500979 -AAGGTCG-----------GTAAATTCTACTGAATA--T----CGAATTTA-------TCAT-TCGAAATGATTGCGG-----TGA-GGTCATTTACTCTATCACTCGAC----------------TGCATAATCCCTAT-------------------TGGGG-GCCCTCTC------GTTTATTGGTTAAACGCATTACCGTAGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5913878 163 + 20921866 -AAGGTCG-----------ACAGATTCCACTGCATA--T----cgcattta--tttttttttctcaaaatgattgTGT-----TGA-GGTCATTTACTTTATCACTTGAC----------------TGCATAATCCATTTTGGtttgtgtgtatgtgtgtggGG-GGCCCTTCTC----GTTTATTGGTTGAACGCATTACTGTAGTCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2198259 144 +  4147112 -AAGGTCG-----------ACAGATTCAACTGAATA--t----cgcattta----tttttttctcaaactgaTTGTGT-----TGA-GGTCATTTA-TTTATCACTTGAC----------------TGCATAATCCACCC---------------AATGTGGAC-GAATTTTCTT-----TCTATTGGTTAAACGTATTACCGTAGTCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   88415 160 -   343467 CAAGGTCGCATTGCCCTATCTAAATTTTGCTGCATA--T----CTGACGGGAAGAATTTTTTCTTG-----------------TGACGGTCACTCACT-TATCACTTCTCCCCGCCACTTCACCTATGCATAATCCGTCG------------------GTGCGC-GTTCTTT-------TCCTATTGGCTAAACGCATTACCGTAGTCAA
i caeJap4.Scaffold18142 I 29 I 419

a score=35608.000000
s ce10.chrX             3861268 87 + 17718866 AGAGTCGAGCAATCGGTTCTCGATTCACTCGAGTTGTAGTAAGAATC-AACAGAACTAGTCTAATTGATTTG-----------------TGAGTCATTGAAAGTG
s cb4.chrX              8983105 91 + 21540570 CAACTCGAGCCCCTT-TT---------CTCAAGTTGTAGTTGAAATCAAACAGAACTAGTCTAATTGATTTCGG-CGCCTT---TTTCCTGACTCATCGCTAATG
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   921023 87 -  4500979 CAACTCGAGCAATTCGTT---------CTCTAGTTGTAGttaaaatcaaacaaaactAGTCTAATTGATTTTGT-TACCTG--------TGACTCattgttaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914041 88 + 20921866 CAACTCGAGCCAATAGTT---------CTCAAGTTGTAGTCAAAATC-AACACAACTAGTCTAATTGATTCGGGCGCCACG-------CTGAGTCAttgttaatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2198403 94 +  4147112 CAACTCGAGCAAATCGTT---------CTCAAGTTGTAGTCAAAATC-AACAGAACTAGTCTAATTGATTCGGA-GGTACGCAGTTGACTGACTCattgttaatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I

a score=3165.000000
s ce10.chrX             3861355 17 + 17718866 TT--TTTTTGGGAATCAGA
s caeRem4.Crem_Contig0   921110 17 -  4500979 tt--tgtttgagcATTAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914129 19 + 20921866 tttatatatGAGCAACAAa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2198497 17 +  4147112 tt--tgtatGAGCAACAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8983196 48 + 21540570 I

a score=42612.000000
s ce10.chrX             3861372 135 + 17718866 ------GTGCTC---TTTC-----------TTTCATTAA-AGTGCATTTGAAAT--ATTCGACACAAAATTCATGGTGTTTTTTGTCTTCTCTGATGAAAAATGCGCAGCTGTTGCTGCTCG--------------GCGCTTTT-GGGATACATAAGATGTTGATGACAGCTG
s cb4.chrX              8983244 139 + 21540570 GTGCTCGTTTTA---TTCG---------------------AATCGATTCGAAATGAGTGAGTTA-GAAATTCATGttg-tttttcgaa--------gaaaaatgcGCAGCTGTTGCAGTCTCGGTGTATCTGAGCAGTGTTTTTGGGGATACATAGGATGATGAGGACAACTG
i cb4.chrX              I 48 I 61
s caeRem4.Crem_Contig0   921127 146 -  4500979 GTCCTAATGGTA---GTCgatttcaatt--tcttattGAAAATCCATTTGAAAT--ATGTGTTA-GAAATtcatgttgttttttcaaa--------gaaaaatgcgCAGCTGTTGCTGTCTC----------AGCAATGCTTTT-GGGATACATAAGATGATGAGGACAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914148 138 + 20921866 -----catctca---tttcattt-------tcttactcg-aatccatttgaaat--ttatgtCA-GAAATtcatgttgttttttcaaa-----cgaaagAAATGCGCAGCTGTTGCTGTTTG----------AGCAACGCATGC-CGGATCCATATGATGATGAGGACAACTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2198514 153 +  4147112 -----CATCTTACATTTCCATTTGAATCGATGGCGTTTG-AAtccatttcaaat--ttatgTCA-GGAATTCAtgctattttttcttgtttctcagaaaaaatgcGCAGCTGTTGCTGTTTG----------AGCAGTGCATGC-AGGATCCATATGATGATGAGCACAACTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I

a score=753.000000
s ce10.chrX             3861507 2 + 17718866 TT
s caeRem4.Crem_Contig0   921273 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914286 2 + 20921866 CT
i caeSp111.Scaffold630  C 0 I 239
s caePb3.Scfld02_0      2198667 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8983383 61 + 21540570 I

a score=-1007.000000
s ce10.chrX             3861509 2 + 17718866 GG-
s caeRem4.Crem_Contig0   921275 2 -  4500979 CA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2198669 2 +  4147112 -GG
i caePb3.Scfld02_0      C 0 I 430
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8983383 61 + 21540570 I
e caeSp111.Scaffold630  5914288 239 + 20921866 I

a score=242.000000
s ce10.chrX             3861511 4 + 17718866 AAAA
s caeRem4.Crem_Contig0   921277 4 -  4500979 AGAA
i caeRem4.Crem_Contig0  C 0 I 387
e caePb3.Scfld02_0      2198671 430 +  4147112 I
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8983383 61 + 21540570 I
e caeSp111.Scaffold630  5914288 239 + 20921866 I

a score=0.000000
s ce10.chrX             3861515 71 + 17718866 TACTGCAATATCAATCTCAAAACTAAATACTAATGACGAATCTTATCGAAATATTCTTACTAAAATAACAA
e caePb3.Scfld02_0      2198671 430 +  4147112 I
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8983383 61 + 21540570 I
e caeSp111.Scaffold630  5914288 239 + 20921866 I
e caeRem4.Crem_Contig0   921281 387 -  4500979 I

a score=-4668.000000
s ce10.chrX             3861586 768 + 17718866  
s cb4.chrX              8983444 703 + 21540570  
i cb4.chrX              I 61 C 0
e caePb3.Scfld02_0      2198671 430 +  4147112 I
e caeJap4.Scaffold18142   88575 419 -   343467 I
e caeSp111.Scaffold630  5914288 239 + 20921866 I
e caeRem4.Crem_Contig0   921281 387 -  4500979 I

a score=-386.000000
s ce10.chrX             3862354 13 + 17718866 TTTCAGAAATTAT
s cb4.chrX              8984147  7 + 21540570 -tcCTAGA-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2199101 13 +  4147112 tttcaaaatttga
i caePb3.Scfld02_0      I 430 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I
e caeSp111.Scaffold630  5914288 239 + 20921866 I
e caeRem4.Crem_Contig0   921281 387 -  4500979 I

a score=-5858.000000
s ce10.chrX             3862367 20 + 17718866 GTGCT----CAAAATTTGATTTCA-------------
s cb4.chrX              8984154 17 + 21540570 --------------TTCGATTGTTGACTTCA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5914527 17 + 20921866 GTGct----c--attttgattg--------------a
i caeSp111.Scaffold630  I 239 C 0
s caePb3.Scfld02_0      2199114 33 +  4147112 --gttacAGC--AATTTGATTATTCCATTATAGTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I
e caeRem4.Crem_Contig0   921281 387 -  4500979 I

a score=4518.000000
s ce10.chrX             3862387 11 + 17718866 AAATGTTGACA
s caeRem4.Crem_Contig0   921668 11 -  4500979 AAATGTTGACT
i caeRem4.Crem_Contig0  I 387 C 0
s caeSp111.Scaffold630  5914544 11 + 20921866 aaatgttgtCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2199147 11 +  4147112 GAAtgttgact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   88575 419 -   343467 I
e cb4.chrX              8984171  0 + 21540570 C

a score=204675.000000
s ce10.chrX             3862398 375 + 17718866  
s cb4.chrX              8984171 396 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   921679 371 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914555 383 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2199158 352 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   88994 390 -   343467  
i caeJap4.Scaffold18142 I 419 I 78

a score=31141.000000
s ce10.chrX             3862773 79 + 17718866 AACGACTCTCGGCGCCTACATTTCTCCGAAATTCACTGAATCACGGCATTGTTGGA-AATTCATGAATGGAGTATACATA
s cb4.chrX              8984567 60 + 21540570 aacgaCTC-----------------TCAAAATTCATTGAGTCACGTCATTGTTAGA-AGG--TTGAATAGAAAATGTATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   922050 66 -  4500979 aacgacTCTTG-----------CCATCGAAATTCATTGAGTCACGTCTTTGTTAGA-AGT--CTGAATAGAAAATACAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5914938 66 + 20921866 aacgacTCTTG-----------CCatcaaaatttattgaatcaTGTCATTGTTAGA-ATT--ATGAATAGTATATGTATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2199510 67 +  4147112 aacgacTCTTG-----------CCATCGAAATTTATTGAATCACGGCATTGTTAGATTTT--ATGAATAGGGTATGTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   89384 78 -   343467 I

a score=360.000000
s ce10.chrX             3862852 2 + 17718866 TA
s cb4.chrX              8984627 2 + 21540570 CA
i cb4.chrX              C 0 I 690
s caeRem4.Crem_Contig0   922116 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 I 18
s caeJap4.Scaffold18142   89462 2 -   343467 ta
i caeJap4.Scaffold18142 I 78 C 0
e caePb3.Scfld02_0      2199577 0 +  4147112 C
e caeSp111.Scaffold630  5915004 0 + 20921866 C

a score=-95.000000
s ce10.chrX             3862854 5 + 17718866 TGTAG
s caeRem4.Crem_Contig0   922136 2 -  4500979 TG---
i caeRem4.Crem_Contig0  I 18 I 1
s caeSp111.Scaffold630  5915004 5 + 20921866 TGGAG
i caeSp111.Scaffold630  C 0 I 72
s caePb3.Scfld02_0      2199577 5 +  4147112 TGGAC
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18142   89464 5 -   343467 tgtaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8984629 690 + 21540570 I

a score=-8824.000000
s ce10.chrX             3862859 45 + 17718866 ------------ATGCAAT-------TTTAACAGCTG-----------TTTCAGAGGT------------------------TGTACCAAGGCGTATAT
s caeRem4.Crem_Contig0   922139 64 -  4500979 ------------GGGAAATTTGACTGTAGAACTG--G-----------AATTGAGGACTAACTTGCATTTTG----------CTTAACAAGATGTTGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2199591 53 +  4147112 ------------AGGAAAT-------AAGAACAG--G-----------TATCAAGGGT---------TTTTGAGGGAGGGACCGCAAAAA-----TGAT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142   89469 73 -   343467 aaTGTGCCGGTGCtgcaatcgaaaaaaaagacga--gTGGTCGGCACCTGTCACAAGT------------------------TGTAGGAAAGTGGAAAT
i caeJap4.Scaffold18142 C 0 I 276
e cb4.chrX              8984629 690 + 21540570 I
e caeSp111.Scaffold630  5915009 72 + 20921866 I

a score=-3111.000000
s ce10.chrX             3862904  5 + 17718866 ACACA-----------------------------
s caeRem4.Crem_Contig0   922203 21 -  4500979 ATTCT-----AAATCGAAGA----AATATG----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2199644 34 +  4147112 ATCCtgtaaaaattcgaatatcTCTATATGCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   89542 276 -   343467 I
e cb4.chrX              8984629 690 + 21540570 I
e caeSp111.Scaffold630  5915009 72 + 20921866 I

a score=-51428.000000
s ce10.chrX             3862909 237 + 17718866 -------AGCCCCCAGATACATTTCCAAACAGAA-----------CAACT------------TGTACATCTGCTTC---------------------TTTTGGCGGCTTTTTTG-----------------------------------------------------------------AGATTTAAAAGGCCAGGGACA-----------------------------------------GGGACAGCTAAAGTGACTTCAATCTCGACAAAAACATTTCAAGTG-------GAAAATA----ATATATTT--------T--------TTAGCTG-----TTTAAAGCGATTA----------ATATG----------AGATAGGGACCGTACCATAGTAATTCTTT-------AA------------GTTACCAATTT-----GTT-------------------------AATTCAGCAAGCTCTTCAATTC
s caeRem4.Crem_Contig0   922224 366 -  4500979 TGTTCCTACCTAATCGGCggcttcttcaaaaaaatagattgCAAACAACTAATGTCTGCTTTCGAAAATATGTCTGTCAAGTGGacgatgaaaaatatttagaatgT-------------------------------------AGGTAAATAGTATAGCCTCT----------ATGCGAGATTCAAAATTACTGGGTTAATA------------TTTTGGATTGTTTTAGCGTTTTAACTGTGAAAAATATGTTAactctaatttcaaaatttgtgacTATAAGA-------------ACAAAACACATTT--------T--------ATCACTG-----ATTATAAAGAAGT----------ATGGT----------GATTCAAGA--TCATCAACGCAGCAACAC-------AGGCTATgccggttactgtagattt-----gtactgaattaaaaatt--cattgaaataatTTAACAAATACGTCAGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5915081 292 + 20921866 ------------------------------agag----------------------------cgCAGATATTC--------CAAATGATGAAAA----CCAAGctatgtttttg------------------------------aaacacatGTTAAAACGTAT-------AAGGAGAGAGATTTGAACACATGT--------------------TCTTGC--------------------GCAAATGACAGGAAAAATTTGAGTTGGAAAAATATGTCTTTCGAG-------Tggaacacaaaaaatatgt----AGAAT--------GTAGGTA-------AACAGTAGCCCtgcttttgaaattcttgaatGATTGAGTTGGTGA-GTtgttagaagaagaaaat-------ag------------atagtcattttgagaaatagtGAAGCGTAGATGACCACAAtaagaattt----------tcatttc
i caeSp111.Scaffold630  I 72 C 0
s caePb3.Scfld02_0      2199678 393 +  4147112 ------AAGCCATGCG--AACTTTTTCAGCGAAG----------------------------AGGAAATCATCTTG--AAACAGAtggtgaaaaagtttttggcggTATCTTTGTATATTTGTGTCTAACTTGAATGACAAACAaaatttgtattgaaaaatatgtgactcgagtggaaaaaatcgaaaatatgtAGAAAGTAGGTAAACAGTAGCTTTAC------TTAGAGATATA---ACGAATGGCTAAATAGATCAATTCTCGAAAGTTCCATTTTGAAGGCTTTTCATAAATTACCACAAAACTGTTCTGAGACTCCAATCAAATAGCTGTCATCATAATAGAAGACT----------ATCCT----------AAGTATAGA-TTTgccataacaaaaaaattaaaaaaaa------------atcgcaatTTT-----ATTGTAAAGTACGGATTACTA-------ATTTT----------CCAAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   89542 276 -   343467 I
e cb4.chrX              8984629 690 + 21540570 I

a score=-4165.000000
s ce10.chrX             3863146  6 + 17718866 -GCCTC----------A
s caeRem4.Crem_Contig0   922590 16 -  4500979 -GTATTTCGAATAGAAA
i caeRem4.Crem_Contig0  C 0 I 54
s caeSp111.Scaffold630  5915373  6 + 20921866 -tcatt----------a
i caeSp111.Scaffold630  C 0 I 123
s caePb3.Scfld02_0      2200071  6 +  4147112 -Gtaac----------a
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold18142   89818  6 -   343467 ACCTTT-----------
i caeJap4.Scaffold18142 I 276 C 0
e cb4.chrX              8984629 690 + 21540570 I

a score=-2765.000000
s ce10.chrX             3863152 22 + 17718866 CCTGGCCGG-TGCACAAAGAATT
s caeRem4.Crem_Contig0   922660 20 -  4500979 CTCGACTTG-TGCCTcaataa--
i caeRem4.Crem_Contig0  I 54 C 0
s caePb3.Scfld02_0      2200111 12 +  4147112 -----CTTGTTGCATTG------
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold18142   89824 19 -   343467 TCCCGCCAG-CGCGGTAAGA---
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8984629 690 + 21540570 I
e caeSp111.Scaffold630  5915379 123 + 20921866 I

a score=106166.000000
s ce10.chrX             3863174 375 + 17718866  
s cb4.chrX              8985319 492 + 21540570  
i cb4.chrX              I 690 I 1
s caeRem4.Crem_Contig0   922680 401 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5915502 373 + 20921866  
i caeSp111.Scaffold630  I 123 I 3
s caePb3.Scfld02_0      2200123 374 +  4147112  
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18142   89843 447 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-5120.000000
s ce10.chrX             3863549 10 + 17718866 ---------CACTGGCAGG
s cb4.chrX              8985812  6 + 21540570 ---------CATTGG----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   923086  6 -  4500979 ---------TCTCCG----
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5915878  5 + 20921866 ---------CGTCG-----
i caeSp111.Scaffold630  I 3 C 0
s caeJap4.Scaffold18142   90290 14 -   343467 AACTAGCTTTAATA-----
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2200497 20 +  4147112 I

a score=49616.000000
s ce10.chrX             3863559 133 + 17718866 ------------ATAATTG-----GCCAGTGTGTTCTTGTTTGTACAGTT-AAAAAATAGTA-TGAT---------TTGAAGCATTTGAATAGAG------TCAGTGTGTATGTGCAA--ATCAAAAAAAAAGGACG----CACTAATTTTG--CTGCCGTTG-TCTTTGTTATAA
s cb4.chrX              8985818 131 + 21540570 ------------ATAATTG-----GCTCA-------CTGTTTGTACag-tcaaaaaatcggattGAAGCACA----GTGGAGCATTTGAATAGAA------GCAATG----TGTGCAATCATC--GAAAAAAGGCAGGCACTACTAATTTTG---TGCCATTG-TCTTTGTTATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   923092 130 -  4500979 ------------ATAATTG-----GCCTATGAGT--CTGTTTGTACAg-t-aaaaaatagca-aaaagcATAGATTGAGCAGCATTTGAATAGAA------GCCATG----TGTGCAA--ATT--CGAAAAAGGCAG----CACTAATTT-----TGCCGTTG-TCTTTGTTATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5915883 114 + 20921866 ------------ATAATT------GCTC---------TGTTTGTACAgtt-aaaaaacagaa-aaaaat-------gagcagCATTTGAATAGAA------GCCATG----TGTGCAA--ATC----TAAAAGGCAG----CTCTAATTT-----TGCCGTTG-TCTTTGTTATAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2200517 110 +  4147112 ------------ATAATTG-----GCTCATGTGT--GTATTTGTACAG-T-AAAAAATAGCA--------------GATGAACATTTGAATAGAA------AGCATG----TGTGCAA--ATC----AAAACGACAG----CTCTAATTT----------TTG-CCTTTGTTATAA
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18142   90304 148 -   343467 AAATTTTGCCAGATAATTGTAATTGccgtttttg--ttgtttgtacAG-T-AAAAAATAACA-GAGTG--------ATTGAGCATTTGAATAGGATAGAGGAGCATG----TGTGCAA--ATT-----GAGAAGCAT----CGTCAATTGAAATTTGCCATTGTTTTTTGTCATGA
i caeJap4.Scaffold18142 C 0 I 249

a score=19126.000000
s ce10.chrX             3863692 61 + 17718866 GCAGAGCTCTCTGTTATAA--ATCGCAATGACTAGAACTCGGCATAGCTGTACACACACATAC
s cb4.chrX              8985949 32 + 21540570 GC--------------------------TGACTAGAACTTTACATAGTTGTACACACA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   923222 54 -  4500979 GC----TGGGCTGTTTTGTGGAATGAAATGACTAGAACTTTACATAGTTGTACACACA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5915997 57 + 20921866 GC----TGCTATGTTGTGG--AATGAAATGACTAGAACTTTACATAGTTGTACACACATACAC
i caeSp111.Scaffold630  C 0 I 245
s caePb3.Scfld02_0      2200627 59 +  4147112 GC----TTTTCTGTTGTGGAAAATGGATTGTCTAGAACTTTACATAGTTGTACACACATGCAC
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18142   90452 249 -   343467 I

a score=-8933.000000
s ce10.chrX             3863753  86 + 17718866 GCACATACGAATTA-----TGGAAGATATGTAAAAGTGC-----------CGATAAACATT---GGAAATTTTG--TATATACA----ATTCAGCAGCAT---------------------GGATAGGATGA--------
s cb4.chrX              8985981  69 + 21540570 -----TACAAAACA-----TGCAAAAAGAGGAGCACAGAGA-------ATGGATATGTAAT---GAAAACTCTAAATATTTAGa----tttca-----------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   923276  79 -  4500979 --------ACATGg-----tggaaaatgaggaaaattga-----------GGATATGTGat---gaaaactataaatattTAGA----TTTCAGTAAAC----------------------AAATAGGAAGA--------
i caeRem4.Crem_Contig0  C 0 I 152
s caePb3.Scfld02_0      2200692 138 +  4147112 --GCCGATGCAGGGATaattatgaaatgaaaactataaATATTTAGATTTcgataaacattttcgaaaattttgactgcttacataatttttattatgCTCTAAGAAAAGGCTTCTGACAGAAAAAGGAGTGTGATGCAG
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18142   90452 249 -   343467 I
e caeSp111.Scaffold630  5916054 245 + 20921866 I

a score=-30273.000000
s ce10.chrX             3863839 560 + 17718866  
s cb4.chrX              8986050 353 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2200830 533 +  4147112  
i caePb3.Scfld02_0      C 0 I 182
e caeJap4.Scaffold18142   90452 249 -   343467 I
e caeSp111.Scaffold630  5916054 245 + 20921866 I
e caeRem4.Crem_Contig0   923355 152 -  4500979 I

a score=-1296.000000
s ce10.chrX             3864399 152 + 17718866 AGTACTTTGAGTTTTCAAAAACTGAATTCCCCTGCGAAATTGAGCACTGCAGAAGTTGATACAAAATGTAGACCAGCTTTTCCAAGCTCACATCTCGGTAGGCTTTGGTTTTATCTCATAAAATTTACCAGCAAAAATACAGACCAAACAAC
s cb4.chrX              8986403 111 + 21540570 agttcacTACTTTTTCGATAGCT----------------TTGA------CAGGAATC-------AAggtaaattggc---tcaaagctgaAAGCTATGGAGTCAATCTATCGGACTATTAACGTTATGCTTccgaaatgcaaa---------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2201363 182 +  4147112 I
e caeJap4.Scaffold18142   90452 249 -   343467 I
e caeSp111.Scaffold630  5916054 245 + 20921866 I
e caeRem4.Crem_Contig0   923355 152 -  4500979 I

a score=-5637.000000
s ce10.chrX             3864551 106 + 17718866 AATTTTTTCACCAAAGCCAAACGA------------------GCCATAAAATAGC-AAAGTGGAGCAAGTTGAAAGCGACTAATAGGAGAA-------AAATCTATT---TCATCATTCAGAAAATATTGCTTTT
s cb4.chrX              8986514  46 + 21540570 ------------------------------------------------aaatatc---------------TTATCAAAAATAATC-------------ACACCTTCTGT-CCATTATTAAGAC------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2201545 134 +  4147112 aatcttttttgaaaaactaaagaatAACTTGAGAACAAGAATATGATAATGTATCTGGAGAGAAAGGAAGTTATGAAGATTAATCTGGGAATTATTCGACAACTTTCACGCCAGTATTAtgaa-atatagttttt
i caePb3.Scfld02_0      I 182 I 23
e caeJap4.Scaffold18142   90452 249 -   343467 I
e caeSp111.Scaffold630  5916054 245 + 20921866 I
e caeRem4.Crem_Contig0   923355 152 -  4500979 I

a score=-1272.000000
s ce10.chrX             3864657 21 + 17718866 AGA-----AAGTATCATCTAATTA-TA
s cb4.chrX              8986560 14 + 21540570 --------Agaaatta--aaatca---
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold630  5916299 18 + 20921866 aga-----aaaaattgttaaatc----
i caeSp111.Scaffold630  I 245 C 0
s caePb3.Scfld02_0      2201702 25 +  4147112 AGAcacagaaaaattgtcaaattag--
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold18142   90452 249 -   343467 I
e caeRem4.Crem_Contig0   923355 152 -  4500979 I

a score=16600.000000
s ce10.chrX             3864678 186 + 17718866 AAAATTGATAATTGTTTATCATCTTATTCCTTTTCCGAAAATTTTCTA--GCGTTTTGACCTTCGTAACTTGACAGTGAAAATAAAACG-------AATCAGATCTGATTACTGTT--TAAAG---------TG-TGAAGCGGTTA--ATCAATTGATAACAC-AGAAATGTCTCGACATTATTCAACAATTT--GC---------GGACACAAACATCAC
s cb4.chrX              8986579 161 + 21540570 cgacaagatAATTTATTATCA------------TC--AGAATAAT-----ATGACTTGACCTTCGTCTC--------GCATAGAAATTGTGACAAAAAACAGATTTAATTACCGTTTCTCAAG---------TG-CGAAAGTAGAC--ATT----Gatacttc--agaatttttcggc--tGATGCTT----CTATC---------GGAAACAAACATCAT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   923507 164 -  4500979 AGAAGTGATAATTAAGTATCATCTA---GTTCTTC--GGAATAAT-----GTGAATTGACCTTCGTGGC--------GGAGAAAAATCG-------AATCAAATCTCGATACTGTT--TAAAG---------TG-TGAATATAGGC--AACGA-AGATactttcaataaaatttagGC--TACTTCAT----T--AC---------GGAAACAAACATCAT
i caeRem4.Crem_Contig0  I 152 C 0
s caeSp111.Scaffold630  5916317 180 + 20921866 AGTAGGAGTAATTAATTATCGTCGT----TTCTCCCGAAAATAAT-----ATGATCTGACCTTCG------------ACAGTGAAACCG-------AATCAAATCTGATTACTATT--TGAAATTGTACAGTTGTTAAAAGAAGTCTAATCAAGTGACGCTAC--GAAAAATTT-GGC--TATTCAAC----T--TTGCTTCATTCGGAAACAAACACCAC
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2201727 170 +  4147112 agaagaagaaattaatTATCGGTCT--TATTCTTCcgaaaataatataaaatgATCTGACCTTCG------------ACAGGGACAACT-------AATCAGATCTGATTACTGTT--TAAAGTTGTAAAAATG-TAAGAGAAGTCTCATCAA------CTAC--G-AAAATTT-GGC--TATTCAAC----T--TT---------CGAAACAAACACCAC
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18142   90452 249 -   343467 I

a score=-6023.000000
s ce10.chrX             3864864 21 + 17718866 -AGACGTGGGTGATGATGATCC------------
s cb4.chrX              8986740 27 + 21540570 CTTAC---AGTTAGGACAAATACGATCCCA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   923671 25 -  4500979 C---------TTAGGACAAACACGGTAATAGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5916506 20 + 20921866 -AGAC---GGTGgaaagagataaa----------
i caeSp111.Scaffold630  I 9 C 0
e caePb3.Scfld02_0      2201897 22 +  4147112 I
e caeJap4.Scaffold18142   90452 249 -   343467 I

a score=-1326.000000
s ce10.chrX             3864885 65 + 17718866 ----------------TTTGAAAATAA------------AAAGTACTTCTAAATTTAAAACAAACAACTA-TATAGATAGACATA---AT--GATCATC
s cb4.chrX              8986767 68 + 21540570 --------------CGGGGCAAAACACCTGGCCACGATGAGA------AAATAGTTACGATAAACAAGTA-------GCGGCATATAAAT--GATCA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   923696 64 -  4500979 -------CAA--ATAAAGTCAAAACAGc-----------gta------aaaaaattatgataaaCAAGTA-------AAGGCATAATGATCAGATCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5916526 62 + 20921866 ------aaaa--ggaaaaacaaattac------------aGA---TAGGGTAAGTTATGATAAACAAGTG-------TGGGCATA---AT--GATCA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2201919 73 +  4147112 tttgagaaaatcggcaaaacaaaacac------------aga----acaaaaaattatgataaacAAGTAGTAT---TGGGCATA---AT--GATCA--
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18142   90452 249 -   343467 I

a score=121288.000000
s ce10.chrX             3864950 241 + 17718866 ACTAA--ATGCCGCCT------------AATTCTCAGG----ACTGATCAACTTAGAAC----AAAT--GGTTTAATC----AGTCA-----GTTCTGCCATTTCATTTAATCACGGCCCCCGTAC-GTTGTACA--CACACATAACCTCC--TCCCCGTAATCGAACGTAAGAAAAACTAGTGAAAGC--CAAGTGAAG--AGAACATGTTTCAACTTTTTGTTGC-----------------------------------CCTCACCT-TTCG--CCCCCCAATGTCAAGTGGAATCCTAGAA---CACAAAATGATTTTTT
s cb4.chrX              8986835 272 + 21540570 ATTAAACACAGTACATGCTGCTTAA---TTTTCTCCGGAGACACTGATCAGTAGAGAAC-GTGAAATAGGGTTTAATG----AGTCAGTGCCGTTCTGCCATTTCATTAAATCACAACC--TGTAT-GTTGTACAAACGCACATAACCCTCATCTCCCGTAATCGA----AGCAAAAACGAGTGAAAGCCTCTAGTTGAGAAAGAACATGTTTCAAC-CTTGCCCTCT----------------------------------CCTCACCTGCCTA--CTTTTCAATGTCAAGTGGAATCctaggaaaccaaaaaatgagttttt
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   923760 242 -  4500979 ACTAA--ACAGTACCT--------A---ATTACTCCGG----ACTGATCACcgtagaacaaaaaaatttggtttaatC----AGTCA-----GTTCTGCCATTTCATTTAATCACGACC--CGTAC-GGTGTACA----CACAAAACC-----TCCCCGTAATCGAAcgtaagaaaaaagagtgaaagc--CTAGTTGAG--AGAAcatgtttcaacttttgattgCC----------------------------------CCTCACCT-CTCA--CCCACCAATGTCAAGTGGGATCctagaa---caaaaaatgatttttt
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold630  5916588 233 + 20921866 CCTAA--ACAGTATTT------------CATACTCCGG---CCCTGATCAACATATAAC----AAAT--GGTTTAATC----AGTCG-----GTTCTGCCATTTCATTTAATCACTACC---GTAA-GGTGTACA----CACAGAACCT----CCCTCGTAGTCGAACgtaagaaaaacaagtgaaag---CCAATGAAT--AGAACATGTTTCACCTTTAAGTTGCC------------------------------TTCACCTCTCCC-------CTCTACAATGTCAAGTGGGATcctagaa---caaaaaatga-tttt-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2201992 225 +  4147112 CCTAAG-ACAG-------------------TACTCCGG----ACTGATCAACATTGAAC----AAAT--GGTTTAATCAGTTAGTCG-----GTTCTGCCAGTTCATTTAATCACTACA---GTAAGGGTGTACA----CACATAAGCC----TTCCCGTAATCGAACGTTAGAAAATCAAGTGAAAG---GCATTGAAT--AGAACATGTTTAAACTTTCGGTTGCC----------------------------------CCTAACCC-------CT---CAATGTCAAGTGGGAtcctagaa---caaaaaatgattttt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   90701 269 -   343467 ---------ACTGCATGCCTACTAATTCCCCTCTCCGG----ACTGATTGACATAGAAT----AAAT--GGTTTAATC----AGTCG-----GTTCTGCCTTTTCATCAAATCACAGGC--CGCAC-GTTGTACA----CAC-----------ACCCGGTAATCGAACGTAAGAAAAACGAGTGAAAG---CCAGTGAAG--AGAACATGTTTAAACTTATGGCTGCCCTTCCTAACCCGCTCGTGCCCTCACTTTTATTCACCTTACCC-TTTATGCCACCCAATGTCGAGTACGATCCTAGAA---CAGAAAAGTATTTTGG
i caeJap4.Scaffold18142 I 249 C 0

a score=-3655.000000
s ce10.chrX             3865191 43 + 17718866 TCAGGCCTAGTCAAATTGGAGA----------------------GGAACATGTCGGCGTTATAAA----------
s cb4.chrX              8987109 61 + 21540570 tcgatt----ccagACGAACGTCGTCTGtcgcaaattttgaagagGACAACGCCGCCACCGCCAA----------
i cb4.chrX              I 2 I 2
s caeSp111.Scaffold630  5916821 33 + 20921866 ----------tcagaatatgat----------------------GGAACGTGTCGACGTCGATGa----------
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      2202217 33 +  4147112 ----------tcagaaaaaagt----------------------cgaaCATGTCGCCGTCGATGA----------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18142   90970 45 -   343467 ----------CAAGGAGAAGGC--------------------AAAAAACATGCCGATGGTGGCGGCAAAGATGAA
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   924002 51 -  4500979 I

a score=34736.000000
s ce10.chrX             3865234 107 + 17718866 --G-AAGATGA--ATAATGAAGAACAATGAGTC----GGAAC-----------------AGAGGTTTCCTAGAGTTT-----T------------TTCTGTTAAG-AAATGAGTC---ATCATACACAAT-AATAATATTGCATTACTTTTTTGG
s cb4.chrX              8987172 120 + 21540570 --A-GAGATGAATATAACGGAGAACAAAGCGTC----GGAAG--------------------AGTTTCGTggagttt-----ttcttctttct--tcctaTTCGATATATTAGTCATGATGacaaacaataaaaaatttcgtaTTACTTTTT-AG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   924053 118 -  4500979 --G-AAGATGA--ATAACGGAGAACAAAGAGTC----GGACG------------------GAGGTTTCGTggagttttcttcttcttcttccc-gtcCTATTCTA-ATATTAGTC---ATCACAAACAAT----AACTTTGTATTACTTTTT-AG
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold630  5916877 105 + 20921866 --A-GAGATGA--ATAACGGAGAACAATGTATTCGACAGAGG-------------------AGGTTTCGTGgagttt-----t-------------tctattcta-aTATTAGTC---ATCACAAACAAT----AACTTTGCATTACTTTTTCAG
i caeSp111.Scaffold630  I 23 C 0
s caePb3.Scfld02_0      2202266 107 +  4147112 --ACGAGATGA--ATAA-GGAGAACATTGTATT----GGCGG-------------------TTGTTTCTaggattct-----tttttc-------atctattCTA-ATATTAGTC---ATCACAAACAAT----AACTTTGCATTACTTTTTTGG
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18142   91015 132 -   343467 TAA-CGGACGA--ACGACGAGAAACAATGTGAC----GGGGttgaaaaaggagaagaagaaaagttttgtggacttt-----ttgattttttttttcctaagaCG-AAATGA------ATCATAAGCAAT----GAtattagtttttatttttgg
i caeJap4.Scaffold18142 C 0 I 1707

a score=8870.000000
s ce10.chrX             3865341 29 + 17718866 GAAGACTATAAATTTTGATATCAACTTTT
s cb4.chrX              8987292 29 + 21540570 CGCCGGTGTCGGCTTTGATTTCATTTGTT
i cb4.chrX              C 0 I 657
s caeRem4.Crem_Contig0   924171 24 -  4500979 CG-----GGCGGCtttgatttcatttgtt
i caeRem4.Crem_Contig0  C 0 I 114
s caeSp111.Scaffold630  5916982 24 + 20921866 CG-----GGCGgctttgatttcatttgtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2202373 26 +  4147112 CG---GTGACAgctttgatttcatttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91147 1707 -   343467 I

a score=-20086.000000
s ce10.chrX             3865370  52 + 17718866 ---------------------------------------------------------------------------------------------------AGGTTTGCTT----AACCTTAGCTACAGTGAT-------TACTAAAAAACTTA------AAGTCTTCAA-----
s caeRem4.Crem_Contig0   924309  65 -  4500979 --------AGATCATGTGCTCTGGTT---------------------------------GAG---------------------AACT-----------ATCAT---CTT----A------------------------TTTGAAGAAACTAATCAATCAAAGTCCTAAA----
i caeRem4.Crem_Contig0  I 114 I 3
s caeSp111.Scaffold630  5917006 161 + 20921866 tatCAAGTACACAGTAGTTTcttattacaaaaaaagaatctccGATATCAGTGACTCTTGAGATAAATTGATAAAGATATTACAACTAGAAATGGGTGATCATGTGCTCTGATA-----GACAGAATAGATcatttaatttaaaaatactcATCAAACAAGTTTT-------G
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2202399 130 +  4147112 ca-----tacacAGTAGTTCCTTGTT----------------TGTAATTTGAGACCCTATAG-TAATTATATGAAAAGAT---AACTAGAA-------ATCATTTGCTC----A-----GAAAAGAGTTACCacgt--ccaaaaaaaactcaccaatcaagtttttggaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91147 1707 -   343467 I
e cb4.chrX              8987321 657 + 21540570 I

a score=7772.000000
s ce10.chrX             3865422 44 + 17718866 AATATTCTGATCA--------------A----TTCACTTC-------CCTTATCATCTAAAAA-----------TACATA
s cb4.chrX              8987978 60 + 21540570 AGTATTCTGATCA----TATCACTCTTGTCGATCAACTCAATCTAATCACTA----------------GGAATATACAAA
i cb4.chrX              I 657 C 0
s caeRem4.Crem_Contig0   924377 70 -  4500979 AATATTCTGATCAATTGTGTCAACTGTG----TCAACTCA---TAGTCACTATCGaatcaaaa---atggaatataCAAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5917167 67 + 20921866 TATATTCTGATCA------TCATCTAAA----TCAACTCT---CTATCATTatcgaatcaaaaaatatggaatatacaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2202529 61 +  4147112 taaattcTGGTCG------TTA---AAA----TTGACTCT---TGATtattatcaaatcaaaa---atggaatataCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   91147 1707 -   343467 I

a score=235689.000000
s ce10.chrX             3865466 738 + 17718866  
s cb4.chrX              8988038 814 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   924447 724 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5917234 784 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2202590 691 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   92854 653 -   343467  
i caeJap4.Scaffold18142 I 1707 I 491

a score=22900.000000
s ce10.chrX             3866204 35 + 17718866 CGACAGATA-GAAACGG----TTTGGTTTAGTCCCGGGAT
s cb4.chrX              8988852 40 + 21540570 CGATAGATAGGAAACAGTTTATTTGGTTTTGTCTTGGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   925171 39 -  4500979 CGACAGATA-GAAACGGTTTATTTGGTTTAGTCTCGGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5918018 39 + 20921866 CGATAGAAA-CAAACGGTTTATTTAGTTATGTCTCGGGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2203281 39 +  4147112 CGATAGATT-CAAACAGTTTATTTGGTTATGTCTCGGGAT
i caePb3.Scfld02_0      C 0 I 724
e caeJap4.Scaffold18142   93507 491 -   343467 I

a score=3957.000000
s ce10.chrX             3866239 53 + 17718866 CTGTTACCACCTTATTCG------GGGCTGTTGAAATTC---CTGGGTTGATGCACTTTTAT
s cb4.chrX              8988892 59 + 21540570 ---CTAGCGTACTGTCTCACACGCAGGTTGATATAATTATCTTGGACAGGATGCACTTTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   925210 52 -  4500979 ---CTATTGTACTGTCCC-------GGTTAATGAAAATATTTCGCGTAGGATGCACTTTTAT
i caeRem4.Crem_Contig0  C 0 I 298
s caeSp111.Scaffold630  5918057 47 + 20921866 CTGTGATTgtattttctt------------atcaaaata---CGGACAGGTTGCACTTTTAT
i caeSp111.Scaffold630  C 0 I 272
e caePb3.Scfld02_0      2203320 724 +  4147112 I
e caeJap4.Scaffold18142   93507 491 -   343467 I

a score=135.000000
s ce10.chrX             3866292 20 + 17718866 G-AAAGTATAGAATGAAATAG
s cb4.chrX              8988951 21 + 21540570 ATAGAGCGAAGAATAGGAAAG
i cb4.chrX              C 0 I 128
e caePb3.Scfld02_0      2203320 724 +  4147112 I
e caeJap4.Scaffold18142   93507 491 -   343467 I
e caeSp111.Scaffold630  5918104 272 + 20921866 I
e caeRem4.Crem_Contig0   925262 298 -  4500979 I

a score=0.000000
s ce10.chrX             3866312 1248 + 17718866  
e caePb3.Scfld02_0      2203320  724 +  4147112 I
e caeJap4.Scaffold18142   93507  491 -   343467 I
e cb4.chrX              8988972  128 + 21540570 I
e caeSp111.Scaffold630  5918104  272 + 20921866 I
e caeRem4.Crem_Contig0   925262  298 -  4500979 I

a score=706.000000
s ce10.chrX             3867560 22 + 17718866 AAATTTTTGAACGTATTTTTTT
s caeRem4.Crem_Contig0   925560 20 -  4500979 AAACTTTTTA--GTACTTTTTA
i caeRem4.Crem_Contig0  I 298 C 0
e caePb3.Scfld02_0      2203320 724 +  4147112 I
e caeJap4.Scaffold18142   93507 491 -   343467 I
e cb4.chrX              8988972 128 + 21540570 I
e caeSp111.Scaffold630  5918104 272 + 20921866 I

a score=449.000000
s ce10.chrX             3867582 5 + 17718866 TAGAT
s cb4.chrX              8989100 5 + 21540570 taatt
i cb4.chrX              I 128 C 0
s caeRem4.Crem_Contig0   925580 5 -  4500979 TAAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2203320 724 +  4147112 I
e caeJap4.Scaffold18142   93507 491 -   343467 I
e caeSp111.Scaffold630  5918104 272 + 20921866 I

a score=381.000000
s ce10.chrX             3867587 3 + 17718866 TTT
s cb4.chrX              8989105 3 + 21540570 ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   925585 3 -  4500979 GTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2204044 3 +  4147112 ttt
i caePb3.Scfld02_0      I 724 C 0
e caeJap4.Scaffold18142   93507 491 -   343467 I
e caeSp111.Scaffold630  5918104 272 + 20921866 I

a score=7941.000000
s ce10.chrX             3867590  79 + 17718866 ---------------CAAAATCTCAATAAAAAATATATACATTTT----TGAAAATGA-GAAAAATATTCAGGAACAGTGTTTCCAGTTACTGTC-------GC-------------CC
s cb4.chrX              8989108  99 + 21540570 gaaattctga------aaaaaaactagggagaata----aaactt----taaaaatat------atattcgaGAACGTTGTTTCCTGTTTTTGTCGGGACATATACAGTTCCTGACATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   925588 108 -  4500979 TAAATTCGAAGCTCAGAATATATTTCAGAACGTTG----AAATGTCATatgaaattatgagaaaaaattcaGGAACATTGTTTCCTGTTTCTGTC-------ATATAGTACCCGACATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5918376  84 + 20921866 ------------------------CAAGAACATAATGACAAATTT----ataagtgagaaaaaaaaactcggGAACATTGTTTCCTGTTTCTCTC-------ATATAGTACCCGCCACT
i caeSp111.Scaffold630  I 272 C 0
s caePb3.Scfld02_0      2204047  92 +  4147112 ---------------cgaaactttctcGAAAGGtatgcaaaaaat----caaagtgag-aaaaaaaactcaggaaCAGTGTTTCCTGTTTCTGTC-------ATATTCAACGTAACATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   93507 491 -   343467 I

a score=290660.000000
s ce10.chrX             3867669 637 + 17718866  
s cb4.chrX              8989207 702 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   925696 648 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5918460 595 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2204139 627 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   93998 671 -   343467  
i caeJap4.Scaffold18142 I 491 I 299

a score=5323.000000
s ce10.chrX             3868306 54 + 17718866 ----------ACTGCCTTTCTGTTCG------------TTTTTGCATTCTTTTCTCG----------------AGGAAATGGTTACTTCTGA
s cb4.chrX              8989909 87 + 21540570 AAGtgaaattattg-----tttttcgcTTTTGCTTGTATTCTTTTATTCTTTTATAGTATgcaatagaaaaagaagaagtggtTACTTATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   926344 54 -  4500979 --------tcagtg-----tttttct------------ttcttttattctATTATGATAT-------------AAAGAATGGTTGCATTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5919055 53 + 20921866 ----------catg-ttgttttttta------------ttctttcattcttagatttga--------------gaagaa--gttATTTCTAA
i caeSp111.Scaffold630  C 0 I 344
s caePb3.Scfld02_0      2204766 51 +  4147112 ----------AGTA-----ttcttta------------ttcttttattctttcatTCAA--------------GAAGAATGGTTACTTTTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   94669 299 -   343467 I

a score=98.000000
s ce10.chrX             3868360 6 + 17718866 TGTATC
s cb4.chrX              8989996 6 + 21540570 GATggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   926398 6 -  4500979 AGTatc
i caeRem4.Crem_Contig0  C 0 I 240
s caePb3.Scfld02_0      2204817 6 +  4147112 AGAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   94669 299 -   343467 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I

a score=635.000000
s ce10.chrX             3868366 4 + 17718866 ATGA
s cb4.chrX              8990002 4 + 21540570 atga
i cb4.chrX              C 0 I 1168
s caePb3.Scfld02_0      2204823 2 +  4147112 --GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   94669 299 -   343467 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I
e caeRem4.Crem_Contig0   926404 240 -  4500979 I

a score=-3912.000000
s ce10.chrX             3868370 827 + 17718866  
s caePb3.Scfld02_0      2204825 605 +  4147112  
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18142   94669 299 -   343467 I
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I
e caeRem4.Crem_Contig0   926404 240 -  4500979 I

a score=0.000000
s ce10.chrX             3869197 29 + 17718866 AAATTATAAAAACAGATATTGAAATGACA
e caePb3.Scfld02_0      2205430 38 +  4147112 I
e caeJap4.Scaffold18142   94669 299 -   343467 I
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I
e caeRem4.Crem_Contig0   926404 240 -  4500979 I

a score=228.000000
s ce10.chrX             3869226 6 + 17718866 CAGTTG
s caeRem4.Crem_Contig0   926644 6 -  4500979 caaatg
i caeRem4.Crem_Contig0  I 240 C 0
e caePb3.Scfld02_0      2205430 38 +  4147112 I
e caeJap4.Scaffold18142   94669 299 -   343467 I
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I

a score=311.000000
s ce10.chrX             3869232 2 + 17718866 AG
s caeRem4.Crem_Contig0   926650 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      2205468 2 +  4147112 aa
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18142   94669 299 -   343467 I
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I

a score=0.000000
s ce10.chrX             3869234 1 + 17718866 T
e caePb3.Scfld02_0      2205470 0 +  4147112 C
e caeJap4.Scaffold18142   94669 299 -   343467 I
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I
e caeRem4.Crem_Contig0   926652 2 -  4500979 I

a score=38.000000
s ce10.chrX             3869235 1 + 17718866 G
s caePb3.Scfld02_0      2205470 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142   94968 1 -   343467 g
i caeJap4.Scaffold18142 I 299 C 0
e cb4.chrX              8990006 1168 + 21540570 I
e caeSp111.Scaffold630  5919108 344 + 20921866 I
e caeRem4.Crem_Contig0   926652 2 -  4500979 I

a score=139178.000000
s ce10.chrX             3869236 188 + 17718866 AAAAATTACCGAATAGTAGCGAAGAAGTGTGAAATTGAAGTGTACAT-GGTTG-----GCAAGTAGAAGATGCCTTTC--------TGAATGAACAGGTTAT-GCC------CCTCTTAA---GACGAGACTGG-CGACTGAAAGGCCAT-AAGGTTTAGACA--ATATAG-----------------TTCACTTTTCAAAGATGGTT----------------AGGTTTATT---CAAAACTAAGCAGAAT----
s cb4.chrX              8991174 205 + 21540570 aaattttatttcacaGTACCAGAGAAGTGTGAAATTGAAGTGTACAT-GAATG-----GCAA-AAGAAGATGCCTTCCCTTTGGTTTGAATGAACAGGTTAT-GCCCAACTACATCTTGA---GACGAGACTGG-CGATTGAAAGGCCAT-AGGGTTTAGACAATATACAG-----------------TTCACTTTTCAAAGGTGGTT----------------AGGTTTATTGGAG-AAACTAAGCAATAT----
i cb4.chrX              I 1168 C 0
s caeRem4.Crem_Contig0   926654 188 -  4500979 AAAATTTACTGTGTAGTTGTGAATAAGTGTGAAATTGAAGTGTACAT-GGTTG-----GCAAGGAGAATATGCCATCA--------TGAATGAACAGGTTAT-GC-------CATCTTGAGACGACGAGACTGG-CGACTGAAAGGCCAT-AAGGTTTAGACA--ATACAG-----------------TTCACTTTTGAAAGGTGGTT----------------AGGTTTATT---C-AAACTAAGCAACG-----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5919452 186 + 20921866 aaaaattactgaCTAGTAGCGAATAAGTGTGAAATTGAAGTGTACAT-GGTTG-----GGAAGGAGAAGATGCCTTTC--------TGAATGAACAGGTTAT-GC-------CATCTTGA---GACGAGAATGG-CGACTGAAAGACCATGAAGTTTTAGACA--ATACAG-----------------TTTACTTCTCATAGGTGGTT----------------AGGTTTATT---C-AAACTAAGCAGCG-----
i caeSp111.Scaffold630  I 344 C 0
s caePb3.Scfld02_0      2205472 188 +  4147112 aaaaattactgaataGTTGGAAATAAGTGTGAAATTGAAGTGTACATGGGTTG-----GCAAGAAGAAGATGGCTTGC--------TGAATGAACAGGTTATAAC-------CATCTTGA---GACAAGACTGGCCGACTGAAAGGCCAT-AAGGTTTAGACA--ATACAG-----------------TTCACTTTTCAAAGGTGGTT----------------AGGTTTATT---C-AAACTAAGCAACG-----
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142   94969 226 -   343467 aaaaattatcaaattgtAGAAAGTAAGTGTGAAATTGAAGTGAACAT-GGTTGGTTGTGTGAAAAGAGGATGCCTTC---------TGAATGAACAGGTTAT-GC-------CTTCTTGG---GTCGAGACAGA-CGGCTGAGGGGTCAT-AACGTTTATGCC--ATTTcgcatttttctttaaaattttcaggttTCAGTGGAAGTTTTACAGTAGAATATAAAGTTTTATA---C-AAATTATGAAGCA-GGAT
i caeJap4.Scaffold18142 C 0 I 36

a score=889.000000
s ce10.chrX             3869424 28 + 17718866 GGAGGAGACTGTAATTTAATC-----GAGTA----TC
s cb4.chrX              8991379 32 + 21540570 AGC-GAGACAGTTtatgaatttcggaaaacg----tT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   926842 19 -  4500979 ---------AGTAATTGAATC-----GAGTG----TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5919638 19 + 20921866 ---------AGTAATTCAATC-----GAGTA----TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2205660 23 +  4147112 ---------AGTAATTGAATC-----AAGAAAGGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95195 36 -   343467 I

a score=-57949.000000
s ce10.chrX             3869452 191 + 17718866 ATA----ACTTGTATAA-------------TAGGAAATTAA----------------------------------------------------GAGAACA----------------------GGGGG-----GGACAATGCAAATGTACATGTCACATACATAGCTGCACT-----------GT--------------GGTATCAAGTTTTAAAATCTTGATACGTAGTT-----------------TTGAGACA---------------------TGGGAATTTAGATTTAGATAATGGG---------AGAGGTGAGA----TTCGTTTTGACCAGAAA---AAATTATCAAA-------------TTA------------------------------GAAGC-AAG
s cb4.chrX              8991411 325 + 21540570 GTATATGAATTGTATGAGTGGAAATAGGGTGAAGCGGATTGGTGACAGGAATaaagtgagattttttgaaaaatatataaaattgagattcaaaaaaata----------gatgaGGTATTTCGGGTCATAGAAACAAAGACGGAA----------ATATTTTGCTGTACT-----------TAGAATATGTTCA----ATATCAAGTTAAGAGATCTTT---TAGAATG-----------------GTTGAGACAATTGAGAT-----GCGGGTGAGGGAACTTCgaaggaattaaaaaa---------aaaag------------gaaaataccAAATAT--AAATTATCTAGACAAAAATGATGCTTATATGGTGAATATTG--AGCTGATTATGATAAAAGCGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   926861 267 -  4500979 TTATAAAACATGTAAGA-------------AAAGCGAATta-------------------------tggaagaaaaatggtATTG--------GAGAATG----------AAATAGGTACTTGAATT-----GAACAAAGTAAATG----------ACATTAGGATGCACT-----------TTGAATATGTTCAT--GGTATCAAGTTGAGAGATCTTGGTACGGAAAG-----------------GTGAAGAC---------------------ATGGAGATTTGAATCAATGAGGAAG---------AGAGGTGAAT----Cttgaaaaaaccagaaat--aaattatcaaaaaaacatt-----ctaTATGATTGAAGATGCTAGTTGATTATGATGAAAGC-AAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5919657 240 + 20921866 ACATATTAGTT-------------------CAATAAGAGGG--------AGAAAGGAGAAAC---------------------------------AAATG----------------GTTTCTGGTAA-----AAACAAAGTAAACG----------ACATATAGCTGCACT-----------TTGGTTAATTTCACACACTATCAATTGTGGAGATCTTGTAATGCAAGG-----------------TTGAGA--------------------------GAGATTCaaatcaatttaaaaa---------agggagagaga---tTCGGGGGGACCAGAAAA--ATATCATGAAAAAG----------CgaaggaattcaaaaaaaaaattgattatgaTTGAAGC-AAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2205683 233 +  4147112 ATAAATAACTTGTATG--------------AAAGAAGAGgg------taataaaaaagaaatcgtaTA-------------------------CAAAATG-----------Acgatatttttgaagt-----gaacTAGGTAAATG----------AAATTTTACTGCACT---------------------------ACTATCAATACTCGAGATC-TATTACGGAAGA-----------------ATGAGGA----------------------GGTGAGATTTGAATCAatgcaaatg---------agaaaaaagcagtttttgaAGGTACCAGACAGTTATATCATTAAAAAG----------CTA-------------------TGATTATGATTAAAGC-AAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   95231 279 -   343467 ACAGATAATTCAtcaga-------------aaagttaaaaa----------------------------------------------------acaaataagacctatttatgtatgtattcgaaga----agaagaaaacagCTA----------GTGCAGGATTAAACTACTCGCCAACATTGATTGAAACTATTGTGTGCCCTTTTTACAGGTAACGTTATCAAATGAGGCGATCTTTGTGGACGTGAAGAAAGATGCAATTGCTATTTGGTTAAGACAATTTGCATTCATTGGGAGAGGTGAGATCAGAGGTGAGA----TTGCTAAGAACCAGAAGTGCATATCATGATAAAGCGGG------------------------------------------------
i caeJap4.Scaffold18142 I 36 I 56

a score=8431.000000
s ce10.chrX             3869643 38 + 17718866 CGTATTTTCCACAGGAAAGATAAACTCTAAGTTAG--CCG
s cb4.chrX              8991736 38 + 21540570 CAAAGTTTCCATTGGAAACAATAACTGCAAAGTAG--CCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   927128 36 -  4500979 CGTAGTTTCCATTGGAA--TACAACTGCAAGTTAG--CCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5919897 35 + 20921866 CG-ATTTTCCATTGGAA--AAAACTTGTGAAATAG--CCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2205916 34 +  4147112 CA-ATTTTccatcggaa--aaaa---acaagatgagCCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   95510 56 -   343467 I

a score=425065.000000
s ce10.chrX             3869681 1082 + 17718866  
s cb4.chrX              8991774 1054 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   927164 1015 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5919932  991 + 20921866  
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2205950 1104 +  4147112  
i caePb3.Scfld02_0      C 0 I 229
s caeJap4.Scaffold18142   95566 1020 -   343467  
i caeJap4.Scaffold18142 I 56 C 0

a score=7717.000000
s ce10.chrX             3870763 22 + 17718866 -------------GAATAATCAAGAGTCAATTGTT
s cb4.chrX              8992835 22 + 21540570 -------------AGATAATCGAATGccaattgtt
i cb4.chrX              I 7 I 93
s caeRem4.Crem_Contig0   928191 22 -  4500979 -------------GGGAAATCAAAAGTCAATTGTT
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5920929 22 + 20921866 -------------ATAAACCTAAGAGTCAATTGTG
i caeSp111.Scaffold630  I 6 C 0
s caeJap4.Scaffold18142   96586 35 -   343467 GTATACCATCAATGGGTATCAAGAAGtcaattgtt
i caeJap4.Scaffold18142 C 0 I 103
e caePb3.Scfld02_0      2207054 229 +  4147112 I

a score=-248.000000
s ce10.chrX             3870785 17 + 17718866 --ACAGGGTGTTTTAGCGG
s caeRem4.Crem_Contig0   928213 16 -  4500979 --CTTTGCT-TTTTGGCGG
i caeRem4.Crem_Contig0  C 0 I 101
s caeSp111.Scaffold630  5920951 17 + 20921866 TTATTCTGT-TTTTGGCG-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2207054 229 +  4147112 I
e caeJap4.Scaffold18142   96621 103 -   343467 I
e cb4.chrX              8992857 93 + 21540570 I

a score=319.000000
s ce10.chrX             3870802 7 + 17718866 GTTCCTT
s caeSp111.Scaffold630  5920968 7 + 20921866 GTTTATT
i caeSp111.Scaffold630  C 0 I 87
e caePb3.Scfld02_0      2207054 229 +  4147112 I
e caeJap4.Scaffold18142   96621 103 -   343467 I
e cb4.chrX              8992857 93 + 21540570 I
e caeRem4.Crem_Contig0   928229 101 -  4500979 I

a score=0.000000
s ce10.chrX             3870809 709 + 17718866  
e caePb3.Scfld02_0      2207054 229 +  4147112 I
e caeJap4.Scaffold18142   96621 103 -   343467 I
e cb4.chrX              8992857  93 + 21540570 I
e caeSp111.Scaffold630  5920975  87 + 20921866 I
e caeRem4.Crem_Contig0   928229 101 -  4500979 I

a score=543.000000
s ce10.chrX             3871518 14 + 17718866 TACCCCTTCGAGGG
s caeRem4.Crem_Contig0   928330 14 -  4500979 TGcccttttgagtt
i caeRem4.Crem_Contig0  I 101 C 0
e caePb3.Scfld02_0      2207054 229 +  4147112 I
e caeJap4.Scaffold18142   96621 103 -   343467 I
e cb4.chrX              8992857 93 + 21540570 I
e caeSp111.Scaffold630  5920975 87 + 20921866 I

a score=253.000000
s ce10.chrX             3871532 15 + 17718866 TTTTTTTTGC------T-----CTAT
s caeRem4.Crem_Contig0   928344 20 -  4500979 tttttgttgc------ttctgACAAG
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5921062 15 + 20921866 tttttctttc------t-----caaa
i caeSp111.Scaffold630  I 87 I 5
s caeJap4.Scaffold18142   96724 20 -   343467 tttttgttgcaattctt-----cag-
i caeJap4.Scaffold18142 I 103 C 0
e caePb3.Scfld02_0      2207054 229 +  4147112 I
e cb4.chrX              8992857 93 + 21540570 I

a score=221227.000000
s ce10.chrX             3871547 749 + 17718866  
s cb4.chrX              8992950 809 + 21540570  
i cb4.chrX              I 93 C 0
s caeRem4.Crem_Contig0   928369 770 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5921082 755 + 20921866  
i caeSp111.Scaffold630  I 5 I 2
s caePb3.Scfld02_0      2207283 728 +  4147112  
i caePb3.Scfld02_0      I 229 I 56
s caeJap4.Scaffold18142   96744 768 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-4447.000000
s ce10.chrX             3872296 19 + 17718866 GCTTTTTCCTTT---------------GCTCAGT
s cb4.chrX              8993759  7 + 21540570 ---------------------------CTTTTGT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   929139  7 -  4500979 ---------------------------GTCTTGT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5921839 34 + 20921866 GCTGATTTTCTATTTAGCTTTGTGTGCGTCTAGT
i caeSp111.Scaffold630  I 2 I 1
s caeJap4.Scaffold18142   97512 22 -   343467 -----TTGTTTATTTAGACA-------ACTCAAT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2208011 56 +  4147112 I

a score=62805.000000
s ce10.chrX             3872315 514 + 17718866  
s cb4.chrX              8993775 627 + 21540570  
i cb4.chrX              I 9 I 91
s caeRem4.Crem_Contig0   929149 442 -  4500979  
i caeRem4.Crem_Contig0  I 3 I 21
s caeSp111.Scaffold630  5921874 464 + 20921866  
i caeSp111.Scaffold630  I 1 I 30
s caePb3.Scfld02_0      2208067 557 +  4147112  
i caePb3.Scfld02_0      I 56 I 32
s caeJap4.Scaffold18142   97534 450 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-1600.000000
s ce10.chrX             3872829 15 + 17718866 CAAAAAC-----CGACGAAA
s caeRem4.Crem_Contig0   929612 15 -  4500979 TGTAATC-----CTACTGTA
i caeRem4.Crem_Contig0  I 21 I 1
s caeSp111.Scaffold630  5922368 13 + 20921866 -CGAAT------TTATAGaa
i caeSp111.Scaffold630  I 30 C 0
s caePb3.Scfld02_0      2208656 19 +  4147112 -aaaatcgaggattATCAGA
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold18142   97984 15 -   343467 tagaaat-----ccacaaaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              8994402 91 + 21540570 I

a score=174001.000000
s ce10.chrX             3872844 667 + 17718866  
s cb4.chrX              8994493 840 + 21540570  
i cb4.chrX              I 91 I 1382
s caeRem4.Crem_Contig0   929628 682 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold630  5922381 605 + 20921866  
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2208675 666 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   97999 575 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-25096.000000
s ce10.chrX             3873511 145 + 17718866 CCCAGATCTCCGGAATCTGAAAGTTCCCAAATTAAAGTT---ATAACAAT-AG--GAAATTATTTAATGC-TTATCAAG--TGCAAAT-------AAAGTGTTAATATCGAG--AATAATTAATATCATA-TGAAGT-------ATGAA-------TAAAT-------AAACAGCT--AAATTTCA----------------------------------------------------------A
s caeRem4.Crem_Contig0   930312 165 -  4500979 ACAAGACTTCCGTGCcctaaaaaatatattatcaCAGTCAGAGAGTTGATAAC--AAAATTATCTAAAACTTGGTCAAT-------attaatcacaaaaaaataattatgataaaacaaacaactcaattataatattcattttataaa-------taaaacac----agttaatg--aaaattca----------------------------------------------------------a
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5922988 171 + 20921866 accAGATAGCCGTGtcctgaaagagaaaaaatgaatttc---gatttgattAC--AGAACTAATTATGAA-TGattaaagaagaaaatgatttgaaaattaataattgtAAGTTAACAATTAACAGCAgt-tgatatttttttagttaa-------tGAAGTTCtcataacaaaaa--aaatctta----------------------------------------------------------a
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2209343 218 +  4147112 ACCAGACCTCCCTgt-ctgcaaaacaaaaaatgactgtg---AATTCAATCAA--ACGGTTAATTAAGGA--AATTGAA----CAAATG------AAATTAATA-----AACTCAACTCATAGTGCAAGT-TGATTTTTAGAATGTGAAAGTGCGGAGAAactttca-agaagaag--aaatcttATTTAGTTTGAATGATAGTTAGAATCAGAATAGCAGAAGTTTTTTACGCACtttcagaga
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142   98574 122 -   343467 -------CACtgcgttttttaaatcaataaat----------atggcaattaactacacttatctaaaat------aaa----gaaat--------aaatatcaataataat--aataatt--------t-taaaattaactttgaaaa-------------------aatcagagttaaaattaa----------------------------------------------------------a
i caeJap4.Scaffold18142 C 0 I 488
e cb4.chrX              8995333 1382 + 21540570 I

a score=-20488.000000
s ce10.chrX             3873656 131 + 17718866 AAAAAAAATTAGTTTGATAGTTTT--TATTAGAGCATTAAACATTTTAAGAAATGGTCTGGCATCCAGGCCATTG---AACAAAAATGCATATTTTGAGATGGTTTTtttttccgaaaaaatcta---tttattttagc------
s caeRem4.Crem_Contig0   930477  57 -  4500979 aatgaacctA----------------TATTAGAACAcaga---------------------------atttttag---tttaaaagTGT-----------------------------AAAAGCA---------CTTTAA---C-
i caeRem4.Crem_Contig0  C 0 I 117
s caeSp111.Scaffold630  5923159  77 + 20921866 aataaaaaaa-------------aggtg-aggaacaaagaaaa-------aagt-------------cgttacagagaaattgaaatgt-----------------------cacggaaaaaatg--------tcttaca---ca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2209561 129 +  4147112 aacaaaagta--tCCAACACTTTAGGTATAGAAACAGAGAACAT------AAGTGACTTTTCGT--GCTCCCCTGACAATTCAAAGTGTG------GAGGGAGTCAGTTGAGCATGAGAAATTTgcttttgattctttcattTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   98696 488 -   343467 I
e cb4.chrX              8995333 1382 + 21540570 I

a score=-7805.000000
s ce10.chrX             3873787 130 + 17718866 tgaaacgttttcaaaagtgctctaaactgtcctgaaaaat----------------------------------taaatatttcgactattcgatacttgaaaatcaaccaattttcagcattttcttgaacgtttcaatgaatgtcattttcaaactaattaa
s caeSp111.Scaffold630  5923236  73 + 20921866 aaaaaaGCATCCA------------------CAGGGAGAT----------------------------------GAAAAGTGCG---------ATACT--------------CTTCTAGCATTCAC----------------ACGTTCTgctttttttagaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2209690 126 +  4147112 AGAAATACCTTCAAAAT-------GACTGT-CGGGCAgatagttttatttttgttttgactttGTCATGGGCGGGCAATGAGCGTGGAAGTTAATCct------------aattctcaaatttcat----------------ccACTACGCCTAAATTAG--AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   98696 488 -   343467 I
e cb4.chrX              8995333 1382 + 21540570 I
e caeRem4.Crem_Contig0   930534 117 -  4500979 I

a score=-24362.000000
s ce10.chrX             3873917 185 + 17718866 gtaatttcccttaatttaatatcaatttt-----caatagaaaaag---------ttggaacaaaatggaacataggtaattttg-----------tagaATTGCTGTCCACCTCT-------------AGAATACAGTGAAAATGCAAAAAAAAACTAAAAATGAG---ATAAAAGCTGACAAAATTAAACAATTGGGTGCAAGGCAATAT-GGGACTTGAATATT
s caeRem4.Crem_Contig0   930651 130 -  4500979 GTACTTTTTCCT-GCATTGAATGAAAGTT-----CAgtacaaaaag------ttgattgTAAGTGAT-----------ATCTTTA---------------------GGTTATTGTC-------------AATTTG------------------------AAAACGGT-TAATGATTTGTTCGAAAACTAGGAGAACAATTTTAATAAAAGAT---------------
i caeRem4.Crem_Contig0  I 117 C 0
s caeSp111.Scaffold630  5923309 111 + 20921866 -------------gtgTTCGATGAAAGTGTCGACTAGTACGagagattttcgaattttggaaatgataACACTTCAAAATTTGCA---------CATAGGATAATTTGACACCTTC-------------TCTTTG------------------------AAGGTGGT----------CTT-----------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2209816 182 +  4147112 -------------GTGTCGGATTAAG--------TAGTAAAAGAAA------GCAGtaggaaaagaggaggaatcaaagtttttatgaGTACAGCGTATTTTAGTTGAGCACAGTCCAATCATTTTGCGTATTTGCA-TGTAAAACTGAGCAGAAAATCAATGCGGTAAAATTATTGCTTTTAAAATC---Tgaacgaatctgaaaaaatatt--------------
i caePb3.Scfld02_0      C 0 I 93
e caeJap4.Scaffold18142   98696 488 -   343467 I
e cb4.chrX              8995333 1382 + 21540570 I

a score=-4500.000000
s ce10.chrX             3874102 103 + 17718866 ATAATCCTGTTTATTAAAAAT----TATGTTAG-AACTCTAGAATTTCATCCAATTTAATTAAAATGATACACATATTGCGTTTCAGCCTTAGAAATTTGTATTTTTC-
s caeRem4.Crem_Contig0   930781  75 -  4500979 GTAGCTCTG-----TAAAAAT----TGtgttaaaaaattgatcat-----------------AAACACCAAATTGAAGAAAGT-------AAGCGAATAGTATTACTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5923420  98 + 20921866 TTAATCCT--------AAAATTTTATGCGTCCGCAACTTTGTCATTTTGTTTCG-TTAATCAAAACACGAACTTTAGTGAGTTT--GTTGTAgtgagaaatttgaatct
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2209998  93 +  4147112 I
e caeJap4.Scaffold18142   98696 488 -   343467 I
e cb4.chrX              8995333 1382 + 21540570 I

a score=-35460.000000
s ce10.chrX             3874205 303 + 17718866 TATACAATAAATTCGAACTATGTATTCAAAATGTGGGGTTATACTACACAAG--TTTCAAAAATGATCCTAGGTGTCCGTTGCGAATAAAATATGTG---------TGATAATGGCTTTGGA--GGCAAAATATTAT------CATAAAGAAGATAATAAGTAAGTAGAGATATTTTGCAACCCCTCTCTCAAATAATGAAACCATGG------CTACTGCGTATCCCATATTACGTTTCCAAGTTTTTCGGAAAAAATAGGAAAAGGTG---ACTAATAT--------CTGTTTCAATAAGGGTAAATTGTTCGGCCAGATAATAGAGCCACCAAAAT
s caeRem4.Crem_Contig0   930856 215 -  4500979 ----------------ATAAATT------AGCCAG-------ATCACCTAAA--TTACCACACTGA------------------TAGAAAAATTGTCGAGCT----TGACAATGTCAAATATAAAGCAAGCAATtatgaaatataaaatctgaaatttacgTAAACAAGAATATCTC---------------GATGATAAAAGAATGGACCATGATA-----------ATAGTACaca---------------tgaattctgaaaaaatc---tttaacga---------ttttcaaa----------ttatacC-TCAGAAGCAA-------TACAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5923518 181 + 20921866 ----------------ACTATTTCTTTGATATGTG-------AACAGTTATAACTTgataaactaa------------------aaaaaaagctGAGAAACTTCAATTATAGTTATTATAGC--ATTGAgagat--------------------ttttttataattcaaaat--------------------gacaaTATCAACATGT-----------------------ATCAGtt---------------aaaatagagaaatcatgttttcaaataa---------cattCGAA-----------GAAATCGTCA-----------------AAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2210091 250 +  4147112 tattcaaaaaattctaacaaCTTCTTT--TCCATA-------ATCACTAAAAAGTTTCACTGCTAA------------------GGTACATGCTGATACTATAAATTGATAGTCTAAATTACTAATTGATAGTCTAAATTAC-TAcagattatatttttcaaaattcgaaa---------------------aatgatccaaactttt------tta-----------acaATCCgtt---------atctggaaaatttggaacaaatg---aaaaataaaaagtcaTCCATCCAAATTCA---AACTTATATCTTCAGATACCA--------ACAAG
i caePb3.Scfld02_0      I 93 C 0
e caeJap4.Scaffold18142   98696 488 -   343467 I
e cb4.chrX              8995333 1382 + 21540570 I

a score=405.000000
s ce10.chrX             3874508 4 + 17718866 TGGA
s caeRem4.Crem_Contig0   931071 4 -  4500979 TCAA
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  5923699 4 + 20921866 TCCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2210341 4 +  4147112 TCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   99184 4 -   343467 TGCG
i caeJap4.Scaffold18142 I 488 C 0
e cb4.chrX              8995333 1382 + 21540570 I

a score=33524.000000
s ce10.chrX             3874512 90 + 17718866 GGCTCCTGACTAGTT------TGCTTGTTACTGCCACCAGTCTTGAGGACTTGGATGTCTCATGCTAATGAGCATCAATTCATG-TCGCA---CAATCTG
s cb4.chrX              8996715 81 + 21540570 GGATCTCGAGTAGTT------TGCTTGTTGCCGATTC--GCT------ACT----CGTCTCATGCTAATGAGAGTCAATTCATG-TCCCACCCCAATCTG
i cb4.chrX              I 1382 C 0
s caeRem4.Crem_Contig0   931093 84 -  4500979 GGATCTTAAGTAGTT------TGCTTGTTGCTGAGGT--CTTGTAAGGACT----AGTCACATGCTAATGAGCATCAATTCATG-CCTTA---CAATCTG
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold630  5923703 80 + 20921866 GGATCTCAAGTAGTTGGTTGTTGCTGATGGCAGTGG------------TCT----CGTCTCATGCTAATGAACATCAATTCATG-TCTCC---CAATCTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2210345 68 +  4147112 GGACCTCAAGTAGTG---------TCATGGTGGG----------------T----CGTCTCATACTAATGAACACCAATTCATGTTCTCC---CAATCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   99188 74 -   343467 AGCCACTAAGTAGTT------TACTTGTAACCGGCA------------TCA----TGACTCATTCTAATGAGCCCCAATTCATG-GCCAC---CAATCTG
i caeJap4.Scaffold18142 C 0 I 494

a score=58540.000000
s ce10.chrX             3874602 223 + 17718866 CCAGGCCTGCCGTTTTC--ATAGGATGCCGCTGAGGA--AAAC-ATGAATG---AGGTAGTGATACCG--A-AGGACTATTGTTAAAATAG-TGAT----CCTTTCGGATTCGATACACATACATATATAACAAGAGTTATCGGATTAATGTGAATTG---GCT------------CTG-G-----G---GGCTCTCAAAAAGAACAACAGACGGGGAAGAAGCACACCT--ACACACCACCATTTGGCGCATTCCACTCGACAC
s cb4.chrX              8996796 225 + 21540570 CCATTTCCTCCATTTTC--TAAGGATGCCGCTATGAATTTGTG-TTGAATTG--AGTCGGTAATACAG--A-GAGACCTACAATAACAATA-----TTTTTCCTTC-------------ATACAGATCTAACAAGACTTATCGAATTAGTCAGATTTGCTTGTTTATGTGAGATAGAAG-GACCA-TCTCGACTCTTGAAAAACACAACAGACGGTT-----ACACACCT-------CCACCATTTGGCGCATTCCACTCGACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   931177 236 -  4500979 CCGTTTC--CCGtcttt--ttggaataccgcaaAGAA--TGAG-TTGAATGAATAGTTGGTGATACCGGAA-AAAATGTACAATAaccaaaacaattttctccTTCTGCT--ACTCCGGATACAAATGTAACAAGACTTATCGGATTAATGTGAATTG---GTTTGTTTGGGA---GGG-GACCA-T---GGCTCTCAAAAAAGACACCAGACGGTT-----GCACACCTACAC---ACACCATTTGGCGCATTCCACTCGACAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5923783 229 + 20921866 CCATTTC--CCGCCTTC--ACAAAACACCGCGGAAGA--TATTGGTGAATG---AGCCATTGATACCA--A-AATCTGTACAATAACCTAC-CAAT----ATTTTGCAAT--GTTTTAGATTAAGATACAATGAGACTTATTGGATTAATTTGTATTG---GCTTGTTTGGGAT--ATG-GACCA-G---GGCTCTCGAAAAAGACAACAGACGGTGGAT--GCACACCT--AC---GCACCATTTGGCGCATTCCACTTGATAC
i caeSp111.Scaffold630  C 0 I 239
s caePb3.Scfld02_0      2210413 238 +  4147112 CCATTTC--CCGTCTTTTGGATACACACCGCGGAAAT--CGTT-GTGAAAG---AGCTGGTGATACCG--ACAAATTTTACAATAACTCAG-CGATTGTCTTTTCATGCT--GTTTTGGATTCGAATACAACAAGACTTATCGGATTAATgtgaattg---ttttgttttggga--CTGCTACCATG---GGCTCTCGAAAAAGACAACAGACGGTGGAC-AGCACACCT--AC---ACACCATTTGGCGCATTCCACTCGACAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142   99262 494 -   343467 I

a score=4383.000000
s ce10.chrX             3874825 16 + 17718866 GTGTGCA-TCAAATTGG
s cb4.chrX              8997021 16 + 21540570 GTGTGCA-GAGAATTGG
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig0   931413 16 -  4500979 GTGCGCA-GAAAATTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2210651 17 +  4147112 GTGTCCATAAGAATTGG
i caePb3.Scfld02_0      C 0 I 351
e caeJap4.Scaffold18142   99262 494 -   343467 I
e caeSp111.Scaffold630  5924012 239 + 20921866 I

a score=60.000000
s ce10.chrX             3874841 2 + 17718866 AA
s caeRem4.Crem_Contig0   931429 2 -  4500979 GA
i caeRem4.Crem_Contig0  C 0 I 306
e caePb3.Scfld02_0      2210668 351 +  4147112 I
e caeJap4.Scaffold18142   99262 494 -   343467 I
e cb4.chrX              8997037 90 + 21540570 I
e caeSp111.Scaffold630  5924012 239 + 20921866 I

a score=0.000000
s ce10.chrX             3874843 852 + 17718866  
e caePb3.Scfld02_0      2210668 351 +  4147112 I
e caeJap4.Scaffold18142   99262 494 -   343467 I
e cb4.chrX              8997037  90 + 21540570 I
e caeSp111.Scaffold630  5924012 239 + 20921866 I
e caeRem4.Crem_Contig0   931431 306 -  4500979 I

a score=767.000000
s ce10.chrX             3875695 73 + 17718866 TTTTTTTCAATATCCATGT----TTGAATCTCTTTCTTTTACTTTTATTTGTA------------TCCCATTTCAAAACATGCTTAATA
s cb4.chrX              8997127 89 + 21540570 tttttttgaatttgaaggtCAGCTTGTACTTCCTTATTTTGCCTGAAATTGGAATTGAAAGTGATTTTCATCTCAATCAATTTTGATTA
i cb4.chrX              I 90 C 0
e caePb3.Scfld02_0      2210668 351 +  4147112 I
e caeJap4.Scaffold18142   99262 494 -   343467 I
e caeSp111.Scaffold630  5924012 239 + 20921866 I
e caeRem4.Crem_Contig0   931431 306 -  4500979 I

a score=-631.000000
s ce10.chrX             3875768 22 + 17718866 GAAAGTTGTT----GACATCCAATTT
s cb4.chrX              8997216 26 + 21540570 CCATGTTTTTCAACAATTATCATTTC
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold18142   99756 22 -   343467 GAAACTTGTT----TATCTCGTTTTT
i caeJap4.Scaffold18142 I 494 I 1
e caePb3.Scfld02_0      2210668 351 +  4147112 I
e caeSp111.Scaffold630  5924012 239 + 20921866 I
e caeRem4.Crem_Contig0   931431 306 -  4500979 I

a score=600.000000
s ce10.chrX             3875790 1 + 17718866 G
s caeSp111.Scaffold630  5924251 1 + 20921866 G
i caeSp111.Scaffold630  I 239 C 0
s caePb3.Scfld02_0      2211019 1 +  4147112 G
i caePb3.Scfld02_0      I 351 C 0
s caeJap4.Scaffold18142   99779 1 -   343467 G
i caeJap4.Scaffold18142 I 1 C 0
e cb4.chrX              8997242 1 + 21540570 I
e caeRem4.Crem_Contig0   931431 306 -  4500979 I

a score=192469.000000
s ce10.chrX             3875791 201 + 17718866 AAGTCAAAAGTC-GTCGACCGTCGGTGGCTGGTGGGTGCTCTTCTCCAGTGTTTGTCGG----GAGGACGTGTGCAACAGCTTGAATCGAATTATCTCGAGATCGATGTAAATCGTATTTCCCCTCGCAAGGATGCGGACGCACTCAAAACACGAAAATGCGCGAATTCAATTAGCGATTTGATGGTCCGCCAGAAACTC-----CCAAA-A
s cb4.chrX              8997243 193 + 21540570 GAGTCAAAAGTC-TCAGACCGT-----------GGATGCTCTTCTCCAGTGTTTGTCGG--GAAGGGACGTGTGCAACAGCTTCAATTGAATTATCTCGAGATCGATGTAAATCGTATTTCC---CGCACGGATGCGGACGCACTCAAAACACGAAAATGCGCGAATTCAATTAGCGATTTGATGGTCCGGCAGAAACTCTTGAGccaaa--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   931737 194 -  4500979 AAGTTAAACATG-CTGGATCATTTGT-----CGTGGTGCTCTTCTCCAGTGTTTGTCGG--AGTGGGACGTGTGCAACAGCTTGAATCGAATTATGTCGAGATCGATGTAAATCGTATTTCC---CGCAAGGATGCGGACGCACTCAAAACACGAAAATGCGCGAATTTAATTAGCGATTTGATGGTCCGCCAGAAACTC-----CCAAA--
i caeRem4.Crem_Contig0  I 306 C 0
s caeSp111.Scaffold630  5924252 198 + 20921866 AAGTCAAAAGTC-TCGGACCATTTGT----GCGGGATGCTCTTCTCCAGTGTTTGTCGGAAGAAGGGACGTGTGCAACAGCTCGAATTGAATTATCTCGAGATCGATGTAAATCGTATTTCC---CGCAAGGATGCGGACGCACTCAAAACACGAAAATGCGAGAATTTAATTAACGATTTGATGGTCCGTCAGAAACTC-----CTAAAA-
i caeSp111.Scaffold630  C 0 I 615
s caePb3.Scfld02_0      2211020 198 +  4147112 AAGTCAAAAGTCGCCGGACCATTTCT----TGAGGGTGCTCTTCTTCAGTGTTTGTCGGAGAGGAAGACATGTGCAACAGCTTGAATCAAATTATCTCGAGATCGATGTAAATCGTATTTCC---CGCAAGGATGCGGACGCACTCAAAACACGAAAATGCGACAATTCAATTAGCGATTTGATGGTCCGCCAGAAACTC-----CCAAA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142   99780 178 -   343467 GCGTCAAAAGTC-TCGGGC---------------GATGCTCTTCTCCAGTGTTTGTCGG-------GACGTGTGCAACAGCTTGAATCGAATTATCTCAAGATCGATGTAAATTGTATTTCCTTTTGGAAGGATGCGGACACACTCAAAACACGAAAATGCGCGAATTCAATTAGCGATTTGATGGTCC----GAAACTC-----TCAAA--
i caeJap4.Scaffold18142 C 0 C 0

a score=-4853.000000
s ce10.chrX             3875992 41 + 17718866 AGTC----TTGTGAAGA--------TTTATTCAAGTTTGAG-----------------GGAAGACGGTTT--------
s cb4.chrX              8997436 38 + 21540570 agtt----ttggaagag--------TTTGCTT---TCAGAG-----------------GGAGGATGGATT--------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   931931 48 -  4500979 AGTC----TTGAGTTGACTTCG--TTTTGCTT---TGTTGGTTGA-------------GGACGACGGTTT--------
i caeRem4.Crem_Contig0  C 0 I 3847
s caePb3.Scfld02_0      2211218 49 +  4147112 AGTC----TTGAGTTGACTTCGAATCTTTCCT---TGTCAAATT--------------GGAAGAGGTTTT--------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142   99958 68 -   343467 AGTCGCCGTTGTGAGAG-------CTCTGTTC---TTTGAATCGATGAGAGGAAATCTGGACAAAGGGTGgcaaaatg
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5924450 615 + 20921866 I

a score=-376.000000
s ce10.chrX             3876033 18 + 17718866 GAGATAAATAAGAAATAA
s cb4.chrX              8997475 17 + 21540570 GAATCAAATAGAAGAAA-
i cb4.chrX              I 1 I 23744
s caePb3.Scfld02_0      2211269 13 +  4147112 GAAT--ATTGGGAGA---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  100026 18 -   343467 aaaagaaataaaaaataa
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=182.000000
s ce10.chrX             3876051 2 + 17718866 AA
s caeJap4.Scaffold18142  100044 2 -   343467 aa
i caeJap4.Scaffold18142 C 0 I 2741
e caePb3.Scfld02_0      2211282 0 +  4147112 C
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=824.000000
s ce10.chrX             3876053 34 + 17718866 CGTATATGGGCATAAAACAGTGAGCTATCAAAAA
s caePb3.Scfld02_0      2211282 31 +  4147112 ---AAATTGGCTCAGTAGGgtgggaaatcaaaaa
i caePb3.Scfld02_0      C 0 T 133
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=0.000000
s ce10.chrX             3876087 171 + 17718866 TGCAAACAACCGAAAAAGTTCCTCAGACGTCGTGTCTGTTAAATTGTGAAGTCAAGTTCTAATATTAAGTTGAGTCGCTACAAGGATAAATGCCAGCCCGTTTTAGTTTCACTGTTTTAAAATTTAAGAATTTTATCTAAAAATCGTTTAAATACCTTTTTTGTTATTTTG
e caePb3.Scfld02_0      2211313 133 +  4147112 T
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=3187.000000
s ce10.chrX             3876258 39 + 17718866 TCAATTAGCGATTTGATGGTTTGCCGAAAACTCCCAAAA
s caePb3.Scfld02_0      2211180 39 +  4147112 TCAATTAGCGATTTGATGGTCCGCCAGAAACTCCCAAAA
i caePb3.Scfld02_0      T 133 I 982
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=0.000000
s ce10.chrX             3876297 2118 + 17718866  
e caePb3.Scfld02_0      2211219  982 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450  615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=108.000000
s ce10.chrX             3878415 18 + 17718866 CATAATTTTTTCACCGTT
s caePb3.Scfld02_0      2212201 15 +  4147112 cgcaattttttt---ttg
i caePb3.Scfld02_0      I 982 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeSp111.Scaffold630  5924450 615 + 20921866 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=6258.000000
s ce10.chrX             3878433 161 + 17718866 TTCCCGAAATTTTACGATTGTCATTTCTCGTTT-----CATCGACTTTCTACTTCTACCCCCGC-ACATTGTTAACCCCTTTCTTCAG--AATAAAAGTCAACGAAATATGAATTTTCTTCGCTCAATGGCATGCTTCAAGGTAGGTATCCTTCTTTTTTTCAGATTTT------------
s caeSp111.Scaffold630  5925065 157 + 20921866 ttcccGCAAATGCATAACTGTCATTTATTGTTTTA---TGTTTCCTCTGC-CAACTTCCCCCGC--AATtgtcat----tattttcagaaaa-------ccaaaagCTATGGAATACCTGAGATCTGTATTATGTTCCAtggtaagt-------ttttttgttaataaaAATTCACGCTTT
i caeSp111.Scaffold630  I 615 C 0
s caePb3.Scfld02_0      2212216 157 +  4147112 ttaccgAAGATTTATAACTgtcatttattgttttcattcgTTCGCTTTTT-CAACAACCCCCGCGAAATTGTCAA----TGTTTCCAGCTAGCATTACCCCACTTGCCATGAATTTCCTTCGCTCAGTTTTCTGCCctctggtgagt-------tttttttccaatttg------------
i caePb3.Scfld02_0      C 0 I 54
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=-762.000000
s ce10.chrX             3878594 57 + 17718866 TTTAAATGCTTTTTGTAAGTGCCTCCCTGAAACTTCACTTGAAAAAAATCTTTCCTG
s caeSp111.Scaffold630  5925222 42 + 20921866 ATTGaactttattt---------------catttttactgAGTTATAAACCTACTAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2212373 54 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=-989.000000
s ce10.chrX             3878651 38 + 17718866 CTTTTTCAGCGATAGAGTAAAGATCTTTTTTATTAAAA
s caeSp111.Scaffold630  5925264 19 + 20921866 ---------ctctagttt-----tcttttcc-----aa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2212427 26 +  4147112 CTCATTCCACGCTAGTGT-----TCGTTTT-------A
i caePb3.Scfld02_0      I 54 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I
e caeRem4.Crem_Contig0   931979 3847 -  4500979 I

a score=717.000000
s ce10.chrX             3878689 9 + 17718866 AATGTTTTC
s caeRem4.Crem_Contig0   935826 9 -  4500979 AGTGTTCTC
i caeRem4.Crem_Contig0  I 3847 C 0
s caeSp111.Scaffold630  5925283 9 + 20921866 attaaagtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2212453 9 +  4147112 Ggtgttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              8997492 23744 + 21540570 I

a score=49682.000000
s ce10.chrX             3878698 108 + 17718866 -----TTGTCTTCTTTTTCCTCG--CGTTTTCA---AGGTTTTCACAGACAATTAGGTTA--------------------------GGAAGAGTGAGAAGTAATTACAGGGGTT-TCTGGAGAAACAATAAAAATGTGGGCGAGA
s cb4.chrX              9021236 138 + 21540570 ttgtttt-----tttttttcaaatgttcttcCAAAGAGGATTTCACAGACAATTAGGTTATATGACAGATTTTATGGGCGATGAGGTGAGGAGAAAAGAGTAATTAC-GGGTTA-CTGGGTggaacaataaaaatgaggGAAATG
i cb4.chrX              I 23744 C 0
s caeRem4.Crem_Contig0   935835 139 -  4500979 Tcgctttcaaagttttttcctcat-ttctctcA---AGGTTTTCACAGACAATTAGGTTATACGCTTCATTTTATGGGCAATGAGGTGAGGAGTGAAGAGTAATTAC-GGGGTT-CTTCGtggaacaataaaaatgaggtAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925292 130 + 20921866 -----ttctctggtttttctagtt-ttccctcg---aggttttcACAGACAATTAGGTTATACGAGGGGTTTTATGGGCAGTGAGGTGAAGAGTGTAGAGTAATTAC-AGGGTTCTTTGAAggaacaataaaaatgagga-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2212462 130 +  4147112 -----ttctccgaattttc----t-tttcttca---aggTTTTCACAGACAATTAGGTTATACGACAGATTTTATGGGAGATGAGGTGAAGAGTGTGGAGTAATTAC-AGGGTT-TGAGGgggaacaataaaaatgaaagagaaa
i caePb3.Scfld02_0      C 0 I 835
e caeJap4.Scaffold18142  100046 2741 -   343467 I

a score=86.000000
s ce10.chrX             3878806 6 + 17718866 AAAAAG-
s cb4.chrX              9021374 6 + 21540570 AGAGAG-
i cb4.chrX              C 0 I 160
s caeRem4.Crem_Contig0   935974 6 -  4500979 Atgaag-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925422 6 + 20921866 -gAAAGG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2212592 835 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I

a score=-548.000000
s ce10.chrX             3878812 5 + 17718866 -AGTAT
s caeRem4.Crem_Contig0   935980 5 -  4500979 gagga-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925428 5 + 20921866 -TGTAT
i caeSp111.Scaffold630  C 0 I 255
e caePb3.Scfld02_0      2212592 835 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              9021380 160 + 21540570 I

a score=791.000000
s ce10.chrX             3878817 30 + 17718866 GCGAACAAATGCTTTATATGTGA-GTGAAGA
s caeRem4.Crem_Contig0   935985 31 -  4500979 agaagaagatgttgtgTAGGTGAGGTGAAGA
i caeRem4.Crem_Contig0  C 0 I 175
e caePb3.Scfld02_0      2212592 835 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              9021380 160 + 21540570 I
e caeSp111.Scaffold630  5925433 255 + 20921866 I

a score=0.000000
s ce10.chrX             3878847 796 + 17718866  
e caePb3.Scfld02_0      2212592 835 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              9021380 160 + 21540570 I
e caeSp111.Scaffold630  5925433 255 + 20921866 I
e caeRem4.Crem_Contig0   936016 175 -  4500979 I

a score=418.000000
s ce10.chrX             3879643 3 + 17718866 CAT
s caeSp111.Scaffold630  5925688 3 + 20921866 CAA
i caeSp111.Scaffold630  I 255 C 0
s caePb3.Scfld02_0      2213427 3 +  4147112 CAA
i caePb3.Scfld02_0      I 835 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              9021380 160 + 21540570 I
e caeRem4.Crem_Contig0   936016 175 -  4500979 I

a score=8526.000000
s ce10.chrX             3879646 24 + 17718866 ATTTTGAAATGTCTCCATGTTATT
s caeRem4.Crem_Contig0   936191 24 -  4500979 attgtgaaattccaaaatgttgTT
i caeRem4.Crem_Contig0  I 175 C 0
s caeSp111.Scaffold630  5925691 24 + 20921866 ACtgtgaaattccaaaatgttttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2213430 24 +  4147112 ATTgtgaaattccaaaatgttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I
e cb4.chrX              9021380 160 + 21540570 I

a score=62044.000000
s ce10.chrX             3879670 239 + 17718866 TGCTTGATAAGG----TACTGTTCAAACATTTCCCAATTCTCTATGTTTCTTCACACATTT-CTTCTCGAAATAC-CTCCTTATCAGTCTCAGTGATCGTTCCCCTCC--------AGAG---------AACTCTCT--------------TAAAAAACG-----TTG-------------------CCA-AACCTATCGGC-CCCCTCGATCTTCA-ATGTTTCCCAATCCCATCCGCTTCCTGAAG---ACATGCAGCAATCTTTATTTTGATCAAGTCGGAAATTCTCATGAAAAGGTGAATT
s cb4.chrX              9021540 262 + 21540570 TGTTAGATAAGGAATATACTGTTCAAACACCT--------------------------TGG-TTTCTCGAAATAA-CTCCTTATCACTTACCTTGAATCTTTCCTTCTTTGCTA--ATATTCGCCTTTCACCTTTCCTTTCCCTtaacttggaaaaaaaa-----cttttggaaccaaaaaaaatcctca-aaacaATCTAT-TCCGACAATCTCCG-ATGCTACCGAACCCACTACATATTCTGAAGTCGACATGCAGCTATCTCTATGCTGATC---TTGGTTTTCTGAACAAagaggtga---
i cb4.chrX              I 160 C 0
s caeRem4.Crem_Contig0   936215 239 -  4500979 ----AGATAAGGAAGGTACTGTTCAAACAGCT--------------------------TGG-TTTCTCGAAATAACCCCCTTATCAGTTACTTTCAATCTTTTCTTCAAAG-----AACTTTGCCTT--AACTTCCC--------AACCATTAAAAAACG-----TCTCTCTAAGTG----------TTC-ATACAATCTTC-CTCACCAATCTCCA-ATGATTCCCAacccttttcattttttgaagacgaCTTGCAACTATCTTTATTCCGATC---TTGGTTTTCTGGACAAGAAGGTAAGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925715 230 + 20921866 ----agatAAGGAAGGTACTGTTCAAACACCT--------------------------TGG-TTTCTCGAAATAA-CCCCTTATCAGTTACCTTGAATATTCACCC----------AACt---------aactttct------gttttccttcaaaaaag-----tttttaaaagtc----------TCT-ACACTATCTGTATATTCCCATCTTTGAAGGATGTCAAATCCATTATATTTCTTAAAGACTAAATTCATCAATCTCTATTTTGATC---TCGGTTTTTCGGACAAAAAggtaaatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2213454 245 +  4147112 ----agatAAGGAAGGTACTGTTCAAACACCT--------------------------TGGTTTTCTCGAAATAA-CTCCTTATCAGTTACCTTGAACCTTTCCTCTTTCAACACAAACT---------CCCTTCGT------TGAAtccttaaaaaaaagaacttctcTAAAAGTC----------TTTGACACTATCTAT-TCTACCAATCTCCG-ATGCTGCCCAATCcgctatattttttgaagaatacaTGCAGCAATCTTTATTCCgatc---ttgattttttggacaaaaaggTAAATC
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold18142  100046 2741 -   343467 I

a score=-8580.000000
s ce10.chrX             3879909 34 + 17718866 ATAGCCTTATAAACTTCAAA--ACTTGCTAATTGTT---------------------
s cb4.chrX              9021802 43 + 21540570 ---atttttt----ttcaaa--ttttccccaAATTGTGG-TTCTA----GAAATGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936454 50 -  4500979 ---AATTTAT----CCCGAAGGTTTTCTTTGAAGCATATCTTCTATTCGAAAGTGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925945 23 + 20921866 --tattttat----t-------tcttgcttatagaa---------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2213699 33 +  4147112 I
e caeJap4.Scaffold18142  100046 2741 -   343467 I

a score=-2621.000000
s ce10.chrX             3879943 45 + 17718866 AACCCTATATTCATTTGTCCAAGTCTCTGC----------ATATTTCTTAGCC-----------AC
s cb4.chrX              9021845 39 + 21540570 ---------------------------AGTCCACCGCCAATGCCCATTCAGCCAcctatttttaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936504 29 -  4500979 ---------------------------TGT-GACCGCCATGTGTTGTTCAGCC---------TCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5925968 56 + 20921866 aatccatttcttGTCTTTCAAAGTACCTAT-GACCATCATGTTTTGTTTAGCC---------GCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2213732 53 +  4147112 AATCCATTTT---CCTGTCAAAGTGCTTGT-GGCCGGCATGTTTTGTTTAGCC---------GCAT
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold18142  100046 2741 -   343467 I

a score=134279.000000
s ce10.chrX             3879988 214 + 17718866 TTCCTGTATATTTACTGAACAAATTGAGCACTATGGCCCCGATGTTCACACAATTATAAGTGTTGAAGAGAAGAGGGGGGAAAT-GACTGACGTAAATATAGAAA----AAGAGAGGG------------AAAAAGAGTGAAAGATTTGTTCTCACGCCG---ATTTG--CACATCTTGACTTTCTGT---TGGCTGTAGTCAGAGCCATTGTATACAGGTTGATGAGAACACGGGTTT
s cb4.chrX              9021884 220 + 21540570 ttcctgTATATTTACTGAACAAATTGAGCACTATGG-CCCGATGTTCACACAATTATAAGTgttgaagag-agaaaagagaaatcggCTGACGTAGACataagaaatttggaaagaagGGTCTGTGGGAGAGAGCAATGGGGAGAGTTGTTCACACGCCG---ATTCG--CTGATCTTGACTTT-TCT------C-----TAGAGGAAATTGCCTACAGGTTGATGAGAACACAAGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936533 209 -  4500979 TTCCTGTATATTTACTGAACAAATTGAGCACCATGG-CTCGATGTTCACACAATTATCAGTGTTGAAGAG--GAGATGAGAAA--GACTGACGTAAAcataaaaa----ggaaaagag-------gagAGTTAATGAGAGACAGAGTTCTTCACACGCCG---ATTCG--CTGATCTTGACTTT-TGT---TGGC-----TCAGAGAAATTTCCTACAGGTTGATGAGAACACAAGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5926024 198 + 20921866 TTCCTGTATATTTACTGAACAAATTGAGCAGCATGG-CCTAATGTTCACACAATTATAAgtgttgaagag--aa-aagagaaat-ggctGACGTAAACATAAGAA----Tcgagagac--------------------agagagagttGTTCACACGCCG---ATTCG--CTGATCTTGACTTT-TGCTGGTGGCTCTAGTC------ATTGCCTACAGGTTGATGAGAACACAAGTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2213785 201 +  4147112 TTCCTGTATATTTACTGAACAAATTGAGCACTATGG-CCCGATGTTCACACAATTATAAGTGTTGAAGAG--AAGAGGGGAAAA-GGCTGACGTAAACATAAGAG----AAAAGAGTC----------------------AGTGAGTTGTTCACACGCCG---ATTCG--CTGATCTTGACTTT-TGCC--TGGCTCTAGTCAGAGAAATTGCCTACAGGTTGATGAGAACACAAGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  102787 162 -   343467 TTCCTGTATATTTACCGAA-AAATTGAGCA-------CCTGATGTTCACACAGTTATGAGTGTGTAAGAG--GAGAAGAAG----AGCCTACGTAA----------------------------------------------CGAGCTGTTCTCACGCGGGAAACTCAGCCCGTTCTCGGCTTT-------TGACTGCAGTCA----------CTACAGATTGATGAGAACACAAGTTT
i caeJap4.Scaffold18142 I 2741 I 39

a score=16385.000000
s ce10.chrX             3880202 33 + 17718866 TTGGCGGCTGCCGATTGGC---CCCCTTCACGCGCC-
s cb4.chrX              9022104 36 + 21540570 ATGTCGGC-TCTGTTGCCCAAGATGCTTCACGCGCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936742 36 -  4500979 ATGTCGGCAGCCGATCGCCAAGATGCTTCACGCGCC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5926222 36 + 20921866 ATGTCGGCTGTCGATTGGCGAGATGCTTCACGCGCC-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2213986 36 +  4147112 ATGTCGGCTGCCGATCGACAAGATGCTTCACGCGCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  102949 39 -   343467 I

a score=24012.000000
s ce10.chrX             3880235 64 + 17718866 ACTTTTTATGGATAGCTTATG-AGAGCGTGGTTCTTGAAT--TTGGTCGGCAATTGCAGAAAGCAAA
s cb4.chrX              9022140 60 + 21540570 TGTTTTTATGTATTATCTCGGAAGAGTGGACTTGTTGAAA--TCTGCCGGCACT-----GAGGCCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936778 54 -  4500979 TGTTTTTATGGATAATTTCTG-AGAGAGTGCTTGTCGAAT--TTCGTCGGca----------gcaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5926258 56 + 20921866 TGTTTTTATGGATAATTTCTG-AGAGCGTGGTCTTTGAAA--TTCGTCGgcaca--------gaaag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2214022 52 +  4147112 TGTTTTTATGGATAATTTCTA-AGAGCGTGGTCGTTGAAT--TCTGTCGGCAC------------AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  102988 60 -   343467 AGTTTTCATCGATAATTGCTA-AGTGCGTGGTCGTTGAATGGTCGATTGGTGG------AAAGCGAA
i caeJap4.Scaffold18142 I 39 I 474

a score=21915.000000
s ce10.chrX             3880299 66 + 17718866 AAAAAAACT---------TGTGCATGACCA---GATGAGCAGTCTAGAG---ATAATGATCTAAAATCACATTTTAAACAT----------
s cb4.chrX              9022200 74 + 21540570 AAAAAATTTGGCGTGAAATGTGCATGACCA---GATGATCA------AGTAT-TAGTGATCGGAAATCA---GATTAGAgcttcaag----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936832 79 -  4500979 aaaaaaagcagCGTGAAATGTGCATGACCA---GATGATCGTTCGGCAGCACATAATGAtctaaaatca---gtt------ttcaagttGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5926314 75 + 20921866 aaaaaaatctgtgcGAAATGTGCATGACCA---GATGAGCAGTCTGCTTCTCCTAATGATCTAAAATCA---GTTGAACAT----------
i caeSp111.Scaffold630  C 0 I 2419
s caePb3.Scfld02_0      2214074 78 +  4147112 GAAAAAACTGGCGTGAAATGTGCATGACCAGATGATGAGCAGTCGGCTGTTCATAATGATCTAAAATCA---GTtgaacaa----------
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold18142  103048 474 -   343467 I

a score=1725.000000
s ce10.chrX             3880365 7 + 17718866 TTAAAAT
s cb4.chrX              9022274 4 + 21540570 ---aaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   936911 7 -  4500979 TTAGAat
i caeRem4.Crem_Contig0  C 0 I 420
s caePb3.Scfld02_0      2214169 7 +  4147112 ttaaaaa
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18142  103048 474 -   343467 I
e caeSp111.Scaffold630  5926389 2419 + 20921866 I

a score=-1925.000000
s ce10.chrX             3880372 42 + 17718866 TTCGGTGTATTT----AGTTTTATG-----------TCAAGTCAACTTATTTTGAAA-----------------
s cb4.chrX              9022278 34 + 21540570 ttgaatatattttatcagattcact-----------------------attttgaaa-----------------
i cb4.chrX              C 0 I 1498
s caePb3.Scfld02_0      2214176 74 +  4147112 tcaaattaatgttatcagttttattcaaaacgaCAATTAAATATTGTGATCTTTAGATCATTCGAAATCGGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  103048 474 -   343467 I
e caeSp111.Scaffold630  5926389 2419 + 20921866 I
e caeRem4.Crem_Contig0   936918 420 -  4500979 I

a score=-7233.000000
s ce10.chrX             3880414  860 + 17718866  
s caePb3.Scfld02_0      2214250 1175 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  103048  474 -   343467 I
e cb4.chrX              9022312 1498 + 21540570 I
e caeSp111.Scaffold630  5926389 2419 + 20921866 I
e caeRem4.Crem_Contig0   936918  420 -  4500979 I

a score=-3224.000000
s ce10.chrX             3881274 46 + 17718866 a----------ttttttttaaatttCCA-----AATTTCTATT-TCCTCTTGAAAC------TACCGC
s caePb3.Scfld02_0      2215425 61 +  4147112 AGAATATACCtcgttttctctctcgttG-----AACTTC-ATT-TTATCTCGAACTCTTTTGTGTTGt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  103522 43 -   343467 ----------attttttttaatttcccgtTGCTAACTTC-ATTGTAATCTTCGC--------------
i caeJap4.Scaffold18142 I 474 C 0
e cb4.chrX              9022312 1498 + 21540570 I
e caeSp111.Scaffold630  5926389 2419 + 20921866 I
e caeRem4.Crem_Contig0   936918 420 -  4500979 I

a score=616.000000
s ce10.chrX             3881320 6 + 17718866 CACTTC
s cb4.chrX              9023810 6 + 21540570 cacttc
i cb4.chrX              I 1498 I 12
s caePb3.Scfld02_0      2215486 6 +  4147112 cactct
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18142  103565 3 -   343467 CAC---
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5926389 2419 + 20921866 I
e caeRem4.Crem_Contig0   936918 420 -  4500979 I

a score=1188.000000
s ce10.chrX             3881326 121 + 17718866 ACTCTTTTCCT-TTAACTTTTACTGCTCTGTAATTGTTTTTGC---------TTTGTTGCT-----------CCCATGTTCTCTCATATAACACTCTAAATGCCA--TTTTTCCAGCAATTACTTGC-------CAT-GTACC--CAGTATTCC
s cb4.chrX              9023828 121 + 21540570 cCCCGTTCCCCTAAA------ATTGCATTGTAA-AGCTCTTGAGATGCTACACGTGCCGCCGCCGCGTTACTTTTA---ACTCCTAGAT-------CAAATGTCC--TTGTTCCAgtagttttttgt------ttat--------caATGTTCA
i cb4.chrX              I 12 I 3
s caeSp111.Scaffold630  5928808 119 + 20921866 ACTCGTTCCTC-ATAACTTTTACTACATTGTAA-AGCTCTTGA---GCTACACGTGCCgct-----------ctta----ttttcagat-------cagaTGTCC--TACTTTTAgctgtttttttc------gagtagTTTTTGCACtgtgtt
i caeSp111.Scaffold630  I 2419 I 6
s caePb3.Scfld02_0      2215504 120 +  4147112 agtcgtTCCGCTATAACTTTTACTACATTGTAA-TGCTCTTGA---GCTACACGTGCCACC-----------CTCA---GCTTTCAGAT-------CAGATGTCC--TTctttcagtctttttttcc------tcgt-ttccCTGCACTGTTCT
i caePb3.Scfld02_0      I 12 I 9
s caeJap4.Scaffold18142  103568  99 -   343467 -CTCTATACTC-TTTACTTCTATTCCTTCATAT-TCTTTTTAC---AATGAAAG---------------------A---------AGAT-------CAAATATCTTGTCCTTCCAGTtagtttttgcattatttcgt-atttc-----------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   936918 420 -  4500979 I

a score=150133.000000
s ce10.chrX             3881447 398 + 17718866  
s cb4.chrX              9023952 443 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   937338 398 -  4500979  
i caeRem4.Crem_Contig0  I 420 C 0
s caeSp111.Scaffold630  5928933 382 + 20921866  
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2215633 382 +  4147112  
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142  103667 389 -   343467  
i caeJap4.Scaffold18142 C 0 I 25

a score=8369.000000
s ce10.chrX             3881845 14 + 17718866 TTGTAGC-TATC---GAT
s cb4.chrX              9024395 18 + 21540570 TTGTAGCTTATCACTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   937736 17 -  4500979 TTGTAGC-TATCAGTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5929315 15 + 20921866 --GTAGT-TATCACTGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216015 15 +  4147112 --GTAGC-TATCACTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104056 25 -   343467 I

a score=103932.000000
s ce10.chrX             3881859 298 + 17718866 AACTCTGCTCCCAA-------------------AAAACTCGGGG------------------TCATTAGC-AG---GTACTTGAAAATCTGAATTATGAA-------ATGATTAAGGGAGGGGAGGTCTACAAGTGGGAAGAAATTGAACGTTTTTAGGCCAACTACCTCATCCCGCGTCA-------CTTTA-AAAGGCCTCTTCTTTGCACT----------CGGCT-C-TCTCTATGTCCCTTTCGGCTGTTTGTCCTTCTTCTT-CGCATTCTTTTCAACTTGAACTGTCTTTTTTTGTTTTTTTTTCTCTTTTTCACCCTTCACAGTTAATCTTCAATTGTTTCTTCAA-------------AGACTTTCAAAGT
s cb4.chrX              9024413 289 + 21540570 ACCTGTACTCCC---------TGAAAA---ACGAAACctagaatgaaaaagaaatccGTTTTTCTTAAGAGAG---GCACttgaaaaa----actgtgaa--aagttattttcatAAATTGAGATGGACgctcgaaaaaagaaattgaacattttt-ggcCAATTACCTCATCCCGCGTCA-------TTGTCAAAAGG-GTTTTCTTTGCACTCG------CGCGGCTat-cctttgatttt--------tttttgtcct----------caTTCTTTTCAACTTGAACagtcttcttttgttttttctc----------tccctCGCAGTTACT-------------TACAA-------------AGATTCCCgaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   937753 299 -  4500979 ACCTTTGCTCCCGA------GTGAAAAGGCACAAAAACTAGCGG-------------GTCATTCATTAGA-AG---Gtacttgaaaaat--tgctgTG-A--AATTTATATTGGTGGGTCTAAAAGGGGGTTAGGA-----AAATTGAACGTTTTTAGGCCAACTACCTCATCCCGCGTCA-------CTTTC-AAAGA-CTTTTCTTTGCACT----------CGGCT-T-CCTCTGATTCTCATTGGGATGTTTGTCCTCCTTCTT--GCATTCTTTTCAACTTGAAcagtctt-ttttgtttttt-tt----------tcactctcaGTTAatcttcaattgtttcttcaA-------------AGACTTTCAAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5929330 293 + 20921866 ATCTCATCTCCCAG-------------AACTGAGAAATTCGCAG-------------GTCATTCATTATA-GG---GCACTTGAAAAT---GGCTGGGGAGAAATTTATATTGATGAGtcaaaaag-------gagaaattaAATTGAACGTTTTTAGGCCAACTACCTCATCGCGCGTCA-------CTTTC-AAAGA-CTTTTCTTTGCACT----------CGGCC-TCCCTCTGTTTCTCTTTGGGATATTTGTCCTCCACCTC--GCATTCTTTTCAActtgaacagtttt-ttttg-tttttctc----------tccctCGCAGTTAATCTCCAATTGTTTCTTCAA-------------AGACTTTCAAAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216030 291 +  4147112 ATCTT-TCTATTaggaaagttagaaaaaatagataaCTTCACGG-------------GTCGTTCATGTGA-GG---GTACTTGAGAAC---GGCTGTGAA---------ATTaatgag-----agg-------aaaaaaataaattgaacaCTTTTAGGCCAACTACCTCATCGCGCGTCA-------CTTTC-AAAGA-CTTCTCTTTGCACT----------CGGCC-G-CCTCTGTTTCTCTTTGAGATATTTGTCCTTCTTCTT--GCATTCTTTTCAACTTGAAcagtctt-ttttgttttttctc----------tccctcGCAGTTAatcttcaattgtttcttcAA-------------AGACtttcaaagg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  104081 293 -   343467 AACTGTGCTTCCAA-------------------AAAACTA--------------------ATTTGTTGGA-GAGTTGTCATTGAAACC---GTCTGCAAA---------ACTTAT------------------GAAAGAATAAA-TGAACATTTTTAGACCAACTACCTCAATGcgcgtcatttctttttttt-aaatc-gcgttttctgtattttttgcgccgcggcg-t-ccttt-tctctagctattttgtttGCAGTCTTCTTTGCGCATTCTTTTAAACTTGaacagtt---ttttg-ttttgctc-gCACCTCCGCTCTTTACAGTTAATCTT------TCTCTTCAACTCGGCTTTCTTTAGACTTTCAAAGT
i caeJap4.Scaffold18142 I 25 I 879

a score=2716.000000
s ce10.chrX             3882157 59 + 17718866 TTTTAGAAAA----------------CGCGTTGGCGAAAAAAATACAACAAAAAACATTCTAGTTT---TGTGCCGAG
s cb4.chrX              9024702 39 + 21540570 gactcaaaaa----------------c-------ttc-------------aaaaaaagtctAGTCT---ATTGTTTAG
i cb4.chrX              C 0 I 54
s caeRem4.Crem_Contig0   938052 49 -  4500979 GTCGAAAAAA----------------TGCGTTGGCGC-------------GGAAATAGTGTAGTTTGAAGTTGTGTAT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5929623 48 + 20921866 GCCGCaaaaaaaa-------------TGCGTTGGCGC--------------AAAATATTCTAGTTT---GATTCATAG
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2216321 62 +  4147112 aaaagaaaaaaaattgaaagaaaaattgcgTTGGCGC-------------AAAAATAGTCTAGTTT---TATTTCGAG
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold18142  104374 879 -   343467 I

a score=-5301.000000
s ce10.chrX             3882216 46 + 17718866 --AAAAATTGAGCTCCCGCG----TCCCGAATACTATGATGCTCTTTTGATG------
s caeRem4.Crem_Contig0   938105 40 -  4500979 --TAGAACTGATCTTTCATGAGATTTTCTCACC----------CCTTTCGTC------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5929678 40 + 20921866 -----TTCtaatcttcca------ttttcaatctca-------cttttcgttttccta
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0      2216391 46 +  4147112 TCCAATTCTAATCTAGCG------TTTACAATCTAG------TCGTTTAATTTTCACG
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I
e cb4.chrX              9024741 54 + 21540570 I

a score=6322.000000
s ce10.chrX             3882262  99 + 17718866 -------------------CTCTTTAGTCTCGTTTAGTTTTCGTAAATTTAGTTTTAAC-----------------ATTAACATATAGAGTA-----GAGTGCACATCAATTATACCCCTTTTGAATTT-AAAATTTATGA
s cb4.chrX              9024795  89 + 21540570 -------------------------------------------------CTATTTTGTCTCTGGAGAGCCTGTGAACTTTGCATATATAGCACC---AATTGCACATCAATTATCTGCTCTCTGAATGCTAAATATTACGA
i cb4.chrX              I 54 C 0
s caeRem4.Crem_Contig0   938145 107 -  4500979 CAATTTT---TTGG-ATCTCCCcgtatt-------------------ttccattttgtctCAAAAGAT--------ATTAGCATATAATGCATC---AATTGCACATCAATTATCTCCCTTTTGAATACTAAATTTTATGA
i caeRem4.Crem_Contig0  C 0 I 88
s caeSp111.Scaffold630  5929718 123 + 20921866 ---ttttatcttgacttcttctcttattttcc---gagttattt--atttttcgttttctcagtgaaa--------atttgaatatgatGCACCACAAATTGCACA-CAATCATCCGCCTTTAGAATAC-GAAATTTTTAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216437 109 +  4147112 ---CTTT--------CTATTCCCATATTCGTG---AGTTTCCTT--ATTGTCTTTTATC-----GAGG--------ATTAGCATATGATGCACC---AATTGCACATCAATTATCTGCCTTTTGAATACTAAAATTTATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I

a score=3355.000000
s ce10.chrX             3882361 23 + 17718866 AAGAAACGTACTTCATTAATTTT
s cb4.chrX              9024884 12 + 21540570 ---GGAC--------TCAATTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5929841 15 + 20921866 GAGAGAC--------TCAATTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216546 15 +  4147112 GAAAGGC--------TCAATTTT
i caePb3.Scfld02_0      C 0 I 98
e caeJap4.Scaffold18142  104374 879 -   343467 I
e caeRem4.Crem_Contig0   938252 88 -  4500979 I

a score=-2475.000000
s ce10.chrX             3882384 21 + 17718866 CATTTTATGAATTTGCTGTCT----
s cb4.chrX              9024896 21 + 21540570 GCCCTCATGGCTTT----TCCCACT
i cb4.chrX              C 0 I 64
s caeSp111.Scaffold630  5929856 11 + 20921866 GTCCTTATG------------CA--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2216561 98 +  4147112 I
e caeJap4.Scaffold18142  104374 879 -   343467 I
e caeRem4.Crem_Contig0   938252 88 -  4500979 I

a score=-635.000000
s ce10.chrX             3882405 61 + 17718866 GTAGGTCTCAGTTTCATCTGTTAGAT--TTTTGAATATTCTAAAAGtataaataataaaaaaa
s caeSp111.Scaffold630  5929867 58 + 20921866 -----TCTCCGTTTTCCCTTTTAATTGGCTTTTTACGTTATCCATTCTTTATTCGTTCAACTT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2216561 98 +  4147112 I
e caeJap4.Scaffold18142  104374 879 -   343467 I
e cb4.chrX              9024917 64 + 21540570 I
e caeRem4.Crem_Contig0   938252 88 -  4500979 I

a score=-2111.000000
s ce10.chrX             3882466 3 + 17718866 -----taa
s cb4.chrX              9024981 3 + 21540570 tcc-----
i cb4.chrX              I 64 I 6
s caeSp111.Scaffold630  5929925 3 + 20921866 --TGG---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2216561 98 +  4147112 I
e caeJap4.Scaffold18142  104374 879 -   343467 I
e caeRem4.Crem_Contig0   938252 88 -  4500979 I

a score=-547.000000
s ce10.chrX             3882469 27 + 17718866 tCTAACCCTCCCCCCCCCCCCTCATCT-------
s cb4.chrX              9024990 24 + 21540570 tttgatccTCCACCCACTTTT---CTT-------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   938340 27 -  4500979 TTTGATCCTCCTCCAATTCTTTACTTT-------
i caeRem4.Crem_Contig0  I 88 C 0
s caeSp111.Scaffold630  5929928 27 + 20921866 -------CCTAACCATCTTTTTGCCTCTTCAGTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2216561 98 +  4147112 I
e caeJap4.Scaffold18142  104374 879 -   343467 I

a score=76253.000000
s ce10.chrX             3882496 210 + 17718866 -CTCTGCCAAAC---AAAAAA--AAACAGTCTGTTCGCAAATATTATCATTGT-------CGCA--AACTC----------TTCGAA----TTCTCACTGAC----------AAAAAGATGGGAGCTCCCTCCGAAATAGGCTTTGACGTCACG-------GGCTCGATATCAAAAAATCG-C------------G--GCGAC--CCCCCG-CTTG--CTCTGGATTAGCAGACTCT-GCA--AAACGAACGGTAATTTGATCTTTAGCTTTTATT----TCG
s cb4.chrX              9025014 256 + 21540570 CAGTCGTTAACCCcaagggaa--aaaaaaacaattgacaAATATTGTCATTTCCCGCCGacagaaaaactcaaaatcagTCATCGATTTTCTTTTGGCTGACACGCAAGAGGGAAAAGGTGAG------CTCCGAAATAGGCTTTGACGTCACAGATAGAGGGCTCAAtatcaaaaaaccgttttgtTTGG----G-ATCGAC--CCCACGCTTTGCAC---------AACGACTTTTGCAGCAGGCGAACGGTATTTTGATCTtgagacttttttttcg---
i cb4.chrX              C 0 I 784
s caeRem4.Crem_Contig0   938367 216 -  4500979 CAGTCgtcaa-accaaaaaaa--aattagccGATTGACAAATATTGTCATATT-------TGCAAGAACTC--AATCAGTCATCGAT----TTCTCGCTGAC----------GAAAAGGTGAG------CTCCGAAATAGGCTTTGACGTCACA-------GGctcaatatcaaaaaaccg-tttGCTTGG----G--TCGGCGACCCCCGCGTTG--C---------AAAGATTTT----GCAGACGAACGGTATTTTGATCTTGaggcttttttt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5929955 218 + 20921866 -----GTCgaactccaaaaaaacacACATCCGATTGACAAATATTGTCATTTT-------CGCAAGAACTC--AATCAGTCATCGAT----TTCTCACTGAC----------AAGAAGGTGAG------CTCCGAAATAGGGTTTGACGTCAGA------GGTCTCAATATCAGAAAACCG-TTTGCTCAG----GTAGGGGCGACCCTCG-TTTG--C---------AGAGGTTTT-GCAGCCGACAAACGGTATTTTGATCTCGAGagtttttt-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216659 225 +  4147112 -TTCAGTCAAACTGCAAGAAA--AAACAGCCGATTGACAAATATTGTCATTTT-------CGCAAGAACTC-AAATCAGTCATCAAT----TTCTCACTGAC----------AAAAAGGTGAG------CTCCGAAATAGGCTTTGACGTCAGA------GGTCTGAATATCAGAAAACCG-TTTGCTCAGAGGAGGGAGGGTGACCCCTG-TTTG--C---------AAAGATTTT-GCAGTAGACGAACGGTATTTTGATCTCAAGATTTTATT-------
i caePb3.Scfld02_0      I 98 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I

a score=-36743.000000
s ce10.chrX             3882706 304 + 17718866 CTAGGTATTGCGTTGCGTTGAAATGTCAAAATACATTTAGTGAAAAGAAACCGAAGTATCAATATTGTTCTATGGGATGAACGAACAAAAGGGCTTACTAGCTAGTGTAACTATATTATAGTCAAACAATAAAAAAATTAGTCGGATAAAAGCAAACTTTGATAGCTAAA-TTTTTTTAAATTATCAACTGAAGGATGACTTAAATTTATATAAAATCCTGTAAATGTTTTTATTTTTGTTTGTTCAATTCGATATTAACAATTACAATTTTCAAACAAAAATACACATTTTTAAATATTCTATA---
s caeRem4.Crem_Contig0   938583 108 -  4500979 ----------------------ttgaaactcaaacTTTAgttgagaaaa-------------------------acagaaac-------------------------------tagTTTGAGCCACCGTtggaaaaa-----------------------------taca-tttttttaaat-----------------------ttaacaC----TTTTGCTCAT---------------------------------------------TGAACTTATATTCC--------------------AGA
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold630  5930173 112 + 20921866 --------ctagt-tcaCAAAAGTGAAACACTGGGAACAGGTGTAAAAA----GGGT----------TTCTATGACATGAA-----------------------------------AATAGgtaatgat--gaaaaa-----------------------------taca-----gTTAATT-----------------------TTGat-----------caaat---------------------------------------------cgaaagaaaaatac-----------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2216884 146 +  4147112 --GGTAAACGAATGtcacaaaaataagaaatggaAGTTATATATACGAA---------------------TACGACTTATAG-------------------------------CTGAAggagcaaaaaa--ggaaaa-----------------------------catacTGCTATCAGTT-----------------------GTTATA---------GCAAGTAGT---------------------------------------GTCAGCAATAACAATACGA---TTTACTCACTGTACA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I
e cb4.chrX              9025270 784 + 21540570 I

a score=-1832.000000
s ce10.chrX             3883010 72 + 17718866 AATTT--TTGTAATATTCTTCTAATTTTTGAAATTCCTA-----TCTTAACTTACATATGTAGTATCTAGCAAAAAAAA
s caeSp111.Scaffold630  5930285 55 + 20921866 ---ttcACTGTAG-------------TTATGAATCGCTACATCTTATCAGatacttt--------ttttgcaaaCCCGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217030 71 +  4147112 ATTTTCATTGTAGAATAGTGAgcattttttggattgttcAAGTGAATCAACCTGTAT--------TTTCTTAAACAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I
e cb4.chrX              9025270 784 + 21540570 I
e caeRem4.Crem_Contig0   938691 29 -  4500979 I

a score=-12945.000000
s ce10.chrX             3883082 79 + 17718866 TTTTGCTCATAAAATTCCGTTAGATCCTTTCTATAAATTGAGAAAGACAGGTGCATTTT----GTTCAAATATTTCCACAAGT--------------
s caeRem4.Crem_Contig0   938720 48 -  4500979 --------------------------------TT-----------------TCCCTCACAAAACTACAACTAAATACTTTGATCATCAATTTCTGga
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold630  5930340 46 + 20921866 -------------TCTTTCTTA---CCCTCCtag-----------------tctttttc----ttttaaatat-TTCCCAAAAC-------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217101 46 +  4147112 -------------ACTATGTT------CTTCTAT-----------------TTCATCGC--CATTTGGAGTAGATACTCAGTTC-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I
e cb4.chrX              9025270 784 + 21540570 I

a score=11219.000000
s ce10.chrX             3883161 187 + 17718866 CCCGGTTTTCTTTGTTCTATTTCCT-------AAGTTTCAAAAAAGTTTTGTTCAGAA----------ACCAGTAAAAGATTTTTTACATAAATTGCGAAAGTCGACATATCCGTTATGACGA---GTTCACAGTTCAAAACC--AACAATTA----------CGTACATATATG---TT-------TCATGAACTTGTCCTTCCT----------------TTTTTGCAT------AAA-TTGTGCCAAC-C
s cb4.chrX              9026054 201 + 21540570 -CTCAGTTTTCGTTCAATATGCTCAAC---------------AATTTTTGGTccgtaaacattttttgttcc-------aCTTGAACCACAATTCCCGGAAAGTAGTATATCCGGTATGGCGACTAGTTCACAGTTCATCTGC--AACAATTATCCT-AGTGccatgcattttttttctttgttatgTCATGAATACGTA-----------------------TGTTCAATAAGCAAGAG-TTATTCAGAA--
i cb4.chrX              I 784 C 0
s caeRem4.Crem_Contig0   938768 166 -  4500979 -cccattttcttttttttttgtcca---------------------TATGGTTCGTAA-----------------------------------TAACGGAAACCAGTATTTCCGCAATGACGA--GGTTCACAGTTCATCTGC--AACAATTACACTGAGTGCTATGCattggtt---tttgttttgtcaTGAATACGTACTACTGAA--------------GTACTCAAT------GAG-ATATGCAAAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5930386 175 + 20921866 CACGATCGTCATTCTTTTCCG-----------------------------gtccactt---ttttc-------------acttgCTTTAGAT-TGTCGGAAACCAGTATATCCGTACTGACAA--GGTTCACAGTTCATTTTCC-GACAATTATTCTGAGTGTCATGCATACGTT---T-TGCTTTGTCATGAATACGTACTT-------------------ATGTTAAAT------GAGTTTATGCAAAAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217147 233 +  4147112 Cgttgaatttttgtatttccgtccaaccgaaaaagtttt---caaactttgccCGCAA---TTTTCCAATCCATTTTTTACTTGGTGTATAA-TGTCGGAAACTAGTATATCCGTAGTGACAA--GGTTCACAGTTCAACATCCTAACAATTATTCGGAGTGCCATGCATACGTT---TCTGCTATGTCATGAATACGTACTCTCGAAGTACTCAATCTTCAATGTCCAAA------GAGTTTATGCAAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  104374 879 -   343467 I

a score=73269.000000
s ce10.chrX             3883348  92 + 17718866 CCAGTG---CAATGAAGTTAATGGATACCAGGAAATGAAAAGAGAGTGAAAGCC----ACCGGCCAGGGAAA-TCAACTTTTTACAC-------AATGAAATAATAA
s cb4.chrX              9026255 104 + 21540570 CTGGTATTGCAATGAAGTTAATGGATACCAGAAACAG-AGTGAGAGCGAAAGTCAGCGCCCTCC--AGGAAATTAAACTTCTTACACTCACACAAACGGAATAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   938934  91 -  4500979 CTAGTA---CATTGAAGTTAATGGATACCAGGAAATG-AAGGAGAGTGAAAGTC----CCCGGC--AGGAAA-TAAACTTCTTACACAC-----AATGGAATAATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5930561  89 + 20921866 TTGGTG---CAATGAAGTTAATGGATACCAGGAAGTA-AATGAGAGTGAAAGTC----AGCGTC--aggaaa-tgaatttcttACAC-------AATGGAATAATAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217380  89 +  4147112 CTCATG---CAATGAAGTTAATGGATAccaggaaatg-aaaaagagtgaaaGTC----AGTGTC--GGGAAA-TAAACTTCTTACAC-------AATGGAATAATAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  105253  93 -   343467 CCAGTC---AAATGACGTTAATGGATTTTAGAAAATG-AGTGAGAGTGAAAGTCAGGCAGCGCC--AGGAAA-TCAACTTTTTACAC-------AATGGAATAATAA
i caeJap4.Scaffold18142 I 879 I 181

a score=2664.000000
s ce10.chrX             3883440 6 + 17718866 ATAACC
s cb4.chrX              9026359 6 + 21540570 ATAACC
i cb4.chrX              C 0 I 1341
s caeRem4.Crem_Contig0   939025 6 -  4500979 ATAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5930650 6 + 20921866 ATTACC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217469 5 +  4147112 ATAAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I

a score=-23777.000000
s ce10.chrX             3883446 300 + 17718866 TC---CCCTTCTTACTTTTC-------TCATTTTGTTG-------------CGAGTGGATTTTGTTAACGTAAAAGTATTAGTATCCGTATGCAATAGATTACAACCACAAACCACTACTATGACTTCATTGGAAAGAGTGAAATACATATTGAAAATCAAACTTTAAATGAAATATTGC------TTCTAGAAAATGAGAA--AAGAAACGTGCAAAATCAG--ATATTCAGCTGCTTTTTTGTTTTATGTATTGAAGACTAGGTTTCTAAGACCACTCAAGTGGAATTTAAATT-----------------------TTAAAAT---TTTCTTATGCA----AATGTTTTAGG-TTTTGTGA--
s caeRem4.Crem_Contig0   939031 311 -  4500979 -----CCCATCTCATTTCCCTCTAGTATAGCTTTGGAC-AAAATAGACTTGCGAACGGAACGGATTAGTCA-GAACAATCTTCACCTGCA--CTACAAA-TGGGTTGGAATAGTGATACAA--AATTAATA--AAAGAGTCAAAT--TTCCTGGA--------TTT---TGGATCAACAT---TCGTTTCAAAACGC-------CAGAAACTTGCAAATTG----GAATGCGACCCATT--------Tctatgtttcaaatttcattt-tgacgcCATTCAACTgtgacttgaaactttttgtGGGAGAAGATGTGACAAAAAGATTTATTTCTCATACCCaaccatttttta---ttttgtga--
i caeRem4.Crem_Contig0  C 0 I 74
s caeSp111.Scaffold630  5930656 269 + 20921866 TCAGTCCCCTCTTACTCTCGTTTGCAATCTTTTTGTag-----taaat--gaaaaaggatcTCGTTAACGGAAAAGCGTTTGTAGCCGAA--AGACAGATTAGGATGGAATACTACTAC-----TTTTATT--AAGGAATCCA--------------------------TGAAATAACGT------TACCGGATaatctt----ttgaatctttcTAATGT----ACTTGCTAGTCATG----ATAAACCATAGATAAAATCCAAGTC-AAAAGTCATTCAAGTTTGAC------------------------------GAATAAT---TTTCTCATGCATGGGAAAATTCTG---CTTaatatgg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217474 266 +  4147112 -----CCCCTGCTTTTCTCA-TTACGCTCCCTGCCTAGTCGGATAGATGAGAAAAAGGATTTCGCT------AGAGTATTTGAATCCTAA--AAACGGATTAGAGTGGAATACTACTAC---------------AAACGTTCG---------------------------GAAACTACGTTCTTCATATCAGAAATCCCTCGTGTTATACCTATCAAACGTGATAATTCTCAAGGC-----------tccgattttgatattcaCTTCAAAAAGGCATTCAGGagtaaa------------------------------gaaaaat---tttctcatgCATGAGaactttttgggtttttatatta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I
e cb4.chrX              9026365 1341 + 21540570 I

a score=-621.000000
s ce10.chrX             3883746 58 + 17718866 AGTTTCCCACA--GAAA----ATTCT---------TGAAACTTCAAACTTTTGGTCAAACTCATATTTGCTAT---
s caeSp111.Scaffold630  5930925 71 + 20921866 tttttttctta--gaaatgCTATTCTATTCTACTGtgagattttgattttgtgaGCTgacttccattttttgt---
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      2217740 61 +  4147112 tcattttctcatcaaaaggTAACTCT-----------AAACTTTGGCTTTATG----Gccttcagttttcagtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I
e cb4.chrX              9026365 1341 + 21540570 I
e caeRem4.Crem_Contig0   939342 74 -  4500979 I

a score=205.000000
s ce10.chrX             3883804 7 + 17718866 TGATTTG
s caePb3.Scfld02_0      2217801 7 +  4147112 tcatttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I
e cb4.chrX              9026365 1341 + 21540570 I
e caeSp111.Scaffold630  5930996 36 + 20921866 I
e caeRem4.Crem_Contig0   939342 74 -  4500979 I

a score=-2064.000000
s ce10.chrX             3883811 23 + 17718866 ----------------------GCTTCTG--------ATAATATTCTGCGTTT
s caeRem4.Crem_Contig0   939416 23 -  4500979 ----------------------GATTCCG--------TTAATCCCGTGCTTTT
i caeRem4.Crem_Contig0  I 74 C 0
s caePb3.Scfld02_0      2217808 42 +  4147112 tcttctcagAACTCGGAGAAGTTATTCTGAAGTATGATTAAT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I
e cb4.chrX              9026365 1341 + 21540570 I
e caeSp111.Scaffold630  5930996 36 + 20921866 I

a score=-2902.000000
s ce10.chrX             3883834 60 + 17718866 CCTTCTCAA---ATTTTGAAAC------------------------AAATTTTTAAACCCCGTGATAT-GACCATCCATCATTATGGG------------------
s caeRem4.Crem_Contig0   939439 37 -  4500979 ---------------------------------------------------------------------TCCTATCAATCATCATGGTTCCGGTCGTTGTTAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5931032 78 + 20921866 CCTtctaaaacaattttgaaacgtGTGCA----------ACACTCGGAAATTGTTAATCCCgtgcttttttctatcaatcaTCATGGT------------------
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      2217850 86 +  4147112 CCAACTCAAGACAACTAGTTAGGTCTACATAGTGTTTCTACAAT--GAATTTGTTAATCCCGTGCTTTTTCCTATCAATCATTATGCC------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I
e cb4.chrX              9026365 1341 + 21540570 I

a score=-5653.000000
s ce10.chrX             3883894 13 + 17718866 ------------------TCTAGGTTTTG-----TG
s cb4.chrX              9027706 18 + 21540570 ------------------ttttggtttttcctgGTC
i cb4.chrX              I 1341 C 0
s caeRem4.Crem_Contig0   939476 11 -  4500979 ------------------TTTTCgtcttg-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5931110 29 + 20921866 CCTGGTTTgttagaaacttttttctcttg-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217936 15 +  4147112 Cc--------tagaaacttt------ttg-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  105346 181 -   343467 I

a score=225723.000000
s ce10.chrX             3883907 564 + 17718866  
s cb4.chrX              9027724 626 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   939487 582 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5931139 573 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2217951 606 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  105527 661 -   343467  
i caeJap4.Scaffold18142 I 181 I 2634

a score=12050.000000
s ce10.chrX             3884471 111 + 17718866 TTGAATCT-GAAATCCTAAAT---TTAAATTGTGAACTTTGC--------------TATTTTATTTCTATTTTAC-----------------TACTCCCAAAATGCGATGGAAACGTGCCAGAAATTGGTTTTCTTGTTTGGTAAG
s cb4.chrX              9028350  62 + 21540570 TTAGAATT-AAATTGCCACCTTCAGTCCATATTTTCCCCTCC-----------ACCTCCTCATTct--------------------------caatccaa----------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   940069 144 -  4500979 TTAGTTCT-AAATTGCTACCTac-ttctattttcttatttcccgAAACTTCTTACCTATTcgctttttctgtttttattcaatttatcaATACAATTCAATTATGAAATGGAAACGTGCGAGAAAGTGGTTTACATGTTGGGTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5931712 113 + 20921866 TCGATTCTCAAATTcccaatt---ttctatttttattctttc-----------acctattctcttattctgtt-------------------ttattcaattatgAAATGGAAACGTGCGAGAAAATGGATTGCATGTTGGGTAAG
i caeSp111.Scaffold630  C 0 I 120
s caePb3.Scfld02_0      2218557 112 +  4147112 TCACTTCT-AACCTCTTTCAT---TCCTATTCCCATTCTTTC-----------ACCCATTCGCTTTTTCTATT-------------------CCATTCAATTATGAAATGGAAACGTGCAAGAAACTGGATTACATGTTGGGTAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=273.000000
s ce10.chrX             3884582 1 + 17718866 T
s caeRem4.Crem_Contig0   940213 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2218669 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 1124
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9028412 0 + 21540570 C
e caeSp111.Scaffold630  5931825 120 + 20921866 I

a score=-7912.000000
s ce10.chrX             3884583  91 + 17718866 TTTCTGTGACATTTGG-----------------------------------------------------------------AATTTTCTAACAAACCTATAAACAAAAACTTCTAATTTATTTGTCCTATAAACATGACGTGTTGTAATT----CTGTTC---------------------
s cb4.chrX              9028412  47 + 21540570 ---------------------------------------------------------------------------------aaatttcctgCTCACCTATA----------------TTTCTTCTTC------------GTGGCTCAATT----TTATTC---------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   940214 166 -  4500979 TGTTTCATACGTTTCCAGTAAAAGTTATATCCAATTAGTGTTAGCGGAAACACCGGGAGCATGCATAAAACGTAGGCCTtggaatttcttgtttttcttcg-------aCCTTGGGTTTCCTTGTTT--------TGAAGTGACGTGATTACTACTACTTGAAGGCCCGTCGAACAAGGTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I

a score=-845.000000
s ce10.chrX             3884674 24 + 17718866 AAACTAGAGTTGAGTAA------------------------------------TGTTTTA
s caeRem4.Crem_Contig0   940380 60 -  4500979 AAGTCAAGATTGGCTAGACAGACGTTAATCTATTTCTAGCTCAACCCGCACTTCATTTCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9028459 12 + 21540570 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I

a score=-7383.000000
s ce10.chrX             3884698  88 + 17718866 ---------------------------------------TTGCT--------CTAAAAACT---ATGAATAACACAGAAAAAACACAAAAAAGTGGAAGTTGTGCAGTGAGCAGAAAGTGTCGTCAGTTTACGTTACC
s cb4.chrX              9028471  39 + 21540570 ---------------------------------------TTGTT------------CAATT-----------------------ATGAAAG------------GCGGCAAACGT--------GCTAGGATGTG-----
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   940440 119 -  4500979 TTAAAGTTGTCGGtttcaaagaatttgaaaaacggtCACTTGTTCTCCATTTCTAACAATTGGAACATATAATATGG----AACACAAAAA------------ACAGCCATCGGAGAAT-TAGTTGGTCTGTTTCC--
i caeRem4.Crem_Contig0  C 0 I 60
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I

a score=-497.000000
s ce10.chrX             3884786 44 + 17718866 GTTTACGGACCTGttaaaggtggattagcgctagtaggataatt
s cb4.chrX              9028510 22 + 21540570 GTTTTCG----TGTTG--GGTGAGTTG----------------T
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I
e caeRem4.Crem_Contig0   940559 60 -  4500979 I

a score=-15731.000000
s ce10.chrX             3884830 239 + 17718866 gtttcaaaa---caggcttatggcaccac---aatgaccaaatatctttttttctga------------------------aatttcaacattttataattttttgaaaattttagaaatctcgGTTTTTTTTTTCATTTTTTCTTGGATCTCGGAAA----AAAAAGTCAAAGAAAATTTTTTTTTCAATCGAAATTTGTGGTATAGAGAGTTTTCTCAAAA------------------------AAAAAAAAAA--------CCAATAAAAAAACTTTCAAAAATAATCAAAAATTTCCAAA------------------------
s cb4.chrX              9028532 104 + 21540570 GTTTCA-------------------------------------GCcatgtttctgga------------------------aatttc---------------------------cggaattc------------------aaTTAGGCGTCAGCGAGC-----------------------------------------ATGGGATC----------------------------------------ATGCgaaaaa--------tgcataaaaatAATACAAC------ACAAGAATTcctgag------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   940619 300 -  4500979 gtttcaaaatttcggaatttcggaatctcggaattgtccgaatatcaaattttcggactttcggaatctcggactattccgaatttcg---------gattttcggaca---ttcggaatttcggaattgt------ccgaatttcggattttcggactttcggaatgtc--ggaatattccgattt---tcg-gacttacggaatt-----ttttttcaacagattgTCCCATTTACCGATAtcgaatgctgaaaaccgttttttttgttaaaaaaacgctgcgaagagacgaaaatttttaagaaaaaccgcctgaaaactgcggaa
i caeRem4.Crem_Contig0  I 60 I 243
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I

a score=-555.000000
s ce10.chrX             3885069 82 + 17718866 TTTTAAGATTTTTCTGTGAATTTTTGTAACAATAAACAATACTAGTAGCTTCACTAGACCACCTTTAAGGTGCTTAGGGACT
s cb4.chrX              9028636 55 + 21540570 ----aacatttttttttgaa-----gtgacG-TGAGTAACATT-----------TGGACAG------AAAAACCTGCGAACA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5931825 120 + 20921866 I
e caeRem4.Crem_Contig0   940919 243 -  4500979 I

a score=-2475.000000
s ce10.chrX             3885151 161 + 17718866 AGATCAAGT-ACGATTGGCTAGACAAGAGCTCCTAACTATTTTAAATTGTGTTTGTCTACAGCTGAT--------------TTGAAGTTTTTTTTAAATATCAAGAAAAACAGTTTTTATGCCACTAAATGATTTCCTT-------ATTTTCCATCAAATTGTATATAAAAT------TGAGCTGGATA-------------------
s cb4.chrX              9028691 160 + 21540570 AGGTCAACTCAAAATTGGCTAGACA---------GACTGGGATggatt-tgttcattttcagcctat-------ccCCCACTTGATTGtgtttttgacaaatt-tgggAACGAATTTAGTTCCAATGGtcattttctcttccttcCATTTCCTTTCT-----TCTGCAAAAC------TGGGACACGAA-------------------
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630  5931945 179 + 20921866 AGGTCAAGTGAAGATGGGCTAGACA---------GAT--------GTT-TGTCTATTTTCAGCACATGCCTCCACCCCCACTTGATT---TTATTAACCAATTGTGTTTGCATGTTTATCCGGAAGGAACGCtttaatt---ttgagttttttctca-----tttgaaaaatacaataaaaagcacaaaaaaCAACCATCGAAGGATT
i caeSp111.Scaffold630  I 120 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeRem4.Crem_Contig0   940919 243 -  4500979 I

a score=-1610.000000
s ce10.chrX             3885312 64 + 17718866 ------ACTTCTTCCTGCATTTCCATTATTTTCGATGAATTTTCGA------------------------TTTGGGCT------------CATTCGTCTTTTG---GTG-------
s cb4.chrX              9028854 88 + 21540570 AC---------TCTCTGTTTTGC---TTTTTGCTTCGAgactccaaatttttttgctctgcGAGCA------TTGGCTCCTCTGCATTTTCAATTCTTGTTTT---GCG-------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   941162 88 -  4500979 acccctgcCTGCCtctgcttttt---tcttctctatgAGACTCCGA-----------CTCCGAACAAAAACTTAGGCT----TGTATTCTCATTCTTGTTTTT---GCG-------
i caeRem4.Crem_Contig0  I 243 C 0
s caeSp111.Scaffold630  5932124 80 + 20921866 ------agttttctctgtttcct--GCTTTTTCTATGAGACTCCAG----------------AAAA--------GGCT----TGCATTCgcattcttgttttttccgCGGGTCCAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2218670 1124 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=44985.000000
s ce10.chrX             3885376 218 + 17718866 -------TGCTCTCGGAATTGCTC-----AATTGTATAGTACGAACATACTATTTTTCATTGCTCCCCCACTGCT-----------------CTTGCCAA-ATACGTGC-----C----CGTATA---C-----------ATATATTGCG-GG-TTGATGT-GAAGATTGAACG-CGGCGC-GC----GCGTCATTATTTCTC----ACGGCTTCGTCGCACGCTGAAAAAGAATGCGAAAAAACGA-GAAAATTGC------------------CAACCTGATGGATTG--G-TGGG--ATGAACTG
s cb4.chrX              9028942 243 + 21540570 CGAC-------------------C-----AAATGTATAGTACGAatatacaatttttcatttt----ccttctcCCTCAATTGCgtttgaatcccaaaaa-aaaaataagcgaGC----CGTATTCGTTGTAGT------ATATATCGCGCAGTTTGATGCAAAAGATTGAAAGATTGAACGGC----ATGTCATTATTTTCTCCTCTCGGCT---TTGCAT--GGGG---------------ACGACGAAAATTGgcattctctttctcttctccaaCCTGATGGATTA--GTTGTGAAATGGACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941250 225 -  4500979 AGACCAATATTCTCGGA----CTC-----AATTGTATAGTACGaatatacaatttttcatttt----tcatctctc----------------CCCGAAAG-----------TGGC----CGTATATA-CATTGT------ATATATCGCGCAG-TTGATGT-GAAGATTGGAAGATTGAAC-GT----GCGTCATTATTTCTTTCTCACGGCT---TGACATTCggggtgaaa-----aaaaaacga-gaaaattgcCATTCT------------AAACCTGATGGATTG--GTTGGG--ATGGACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5932204 216 + 20921866 -------TATTTTCGGA----CTCTCGATTGTTGTATAGTACGAATacacaatttttcat-------tctccgct-----------------ccaaaaaatatatatacaAGCGC----CATTTT---CATTGTGTATAGATATATCGCGCAG-TAGATGT-GAAGattgaaagaatgaat-gCCAGGGCATCATTATTCTTC----ACGGCT---TTGA-----------------------ACGA-GAAAATTGCCATTCT------------CAACCTGATGGATCG--CTTGGG--ATGAACTG
i caeSp111.Scaffold630  C 0 I 40
s caePb3.Scfld02_0      2219794 215 +  4147112 -------TATTCTCGGG----CTC-----AATTGTATAGTACGAatacacaatttttcatttttgcctcTTCACg-----------------cccaaaaa-atatatacgaGCGCGCGTCCAATT---CATTGT------ATATATCGCGCGG-TTGATGT-GAAGATTGAAAGATTGAAC-GT----GCCTCATTATTTCTC-----CAGCT---TTGCAC--TGGAT--------------ACGA-GAAGATTGCCATTCT------------CAACCTGATGGATTGGTTTTAGG--ATTG----
i caePb3.Scfld02_0      I 1124 C 0
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=-6079.000000
s ce10.chrX             3885594 35 + 17718866 ACTGCGAACCCCCCCCCCTATCCACCATCAAAATT-----------------------------------
s cb4.chrX              9029185 13 + 21540570 ----------------------AATCCACGAAACT-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941475 13 -  4500979 ----------------------CAAAACCAAAGTC-----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2220009 52 +  4147112 ACTG------------------CAAAAGCCAATCCCCCTTGactggttttggtttttgtgcaTGAAAATT
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5932420 40 + 20921866 I

a score=-495.000000
s ce10.chrX             3885629 5 + 17718866 TTCCC
s cb4.chrX              9029198 5 + 21540570 AGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941488 5 -  4500979 TGGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2220061 37 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5932420 40 + 20921866 I

a score=-2787.000000
s ce10.chrX             3885634 20 + 17718866 AGTCGAT-TTGTTGTCTC---CGG-
s cb4.chrX              9029203 22 + 21540570 --TGGTTCTTTGTGCTTTAC-TGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941493 22 -  4500979 --TGGTT-TTTGTGTTGTGCATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5932460 23 + 20921866 AGGGGAT-CTATTGTCTTGA-TACG
i caeSp111.Scaffold630  I 40 I 10
e caePb3.Scfld02_0      2220061 37 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=36359.000000
s ce10.chrX             3885654 178 + 17718866 --------------------------------GATAGAATTTTGCATTG--TTGTGGG------GATGGCTAGAAGTGGAG--------TCTCCTCCTG-AGAAATTCAATTAC-TTTTCGTTTT-GAAAACGCTTGCTTACTTCCATTTACGTTGTTTCT---TGGTTGATAGAATTGCCAA--A-------------CTCAACTT----TCTCCCTTTCT-CGTCACGGAGCCGCCAACCCAACCTTTGC-
s cb4.chrX              9029225 232 + 21540570 AATTTGActctgttttgttttgttgagAGCGCGGGGGTTCTGAGTTTCGGTTTCAAAACTAG--AAAGGCTAAAAGTGGAGTCGTGTCTTCTTCTCCTGAAGGAATTCAATTACtttctcgttttcaaaaaCGCTTCCT-------TTTCATGTTGTTTCTTCCTGGGggatgaaattg-aaa--aaaaccggCTGGCCCAAAACTTAACCTTTTTCCTCCTCTTCGGC-AAA-------CCGACCTTTTGC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941515 205 -  4500979 AGTGGGGGTCTGTTTTG--TTGTTACGA--CTGGATGTGCTGCATTTTG--TTGAATTCTGGTCCAAGGCTAAAAGTGGAG--------TCTTCTCCTG-AGGAATTCAAttactttttcgtttt-gaaaacgcCTGCTTACTTCCTTTTACGTTGTTTCT---TGTGTGATAGAATTG-gaa--a-------------cacaactt----tttttccgcCCGTTTCAC-GAG-------TCGACCTTTTGC-
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold630  5932493 178 + 20921866 ----------------------------AGCGTCATTATCCATGTTTGG--TTCTTCTTCTGCACGAGTC--AAACTGGAG--------TCTTCTCCTG-AGAAATCCAATtac-ttttcgtttt-gaaaacgCCTGCTTACTTCCGTTTAAGTTGTTTCT-----TGTAATAGAATTG-GAG--A-------------GCCAACTT----TTCTTTTGCCGGGGCCACTGAG-------GCGATCTTTTGCC
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2220098 183 +  4147112 ----------------------------GATggcattctttttgtttgg--ttcTAGGTCGGTTCCAGGCTAAAAGTGGAG--------GCTTCTCCTG-AGGAATTCAAttactttttcgtttt-gaaaacgCCTGCTTACTTCCTTTTACGTTGTTTCT-----TGTAATAGAATTG-GAAACa-------------gccaactt----tttttct-----cgcaacTGAGCCG--GACCGATCTTTTGCC
i caePb3.Scfld02_0      I 37 C 0
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=-538.000000
s ce10.chrX             3885832 31 + 17718866 ----TCCGTTTTCCCGTG-ATGTTTCAGTTTGTAAC
s cb4.chrX              9029457 36 + 21540570 CTTTTccgccagtttttttttcattcggcTCATAAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5932671 32 + 20921866 ----TGTGCCCGTTTCAGTCCAAACCACTTTGAAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2220281 31 +  4147112 ----TCCGCCTTCTTTAG-CCAACCCACTTTTCAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeRem4.Crem_Contig0   941720 16 -  4500979 I

a score=44432.000000
s ce10.chrX             3885863 378 + 17718866 ACT------ATTTTTCTACACTTCTGTATTTACATTTCTTTACGAAATGTGTGTAT--ATGTTTTTCTTTTAGTTGTCTAGAGCTTTTAGAATC--AACAAATTTGTGTTCTATTTTTTTCATTTT-----TCT------CCTGGTGTCAGGA-GGAAAGAAGCCAAAAATGATGCTAATTTCTCATCGTTGACTACT--------------------GAGA-----ATAAAAACTAAAAATACATTCTTAAAATTTTATTTTCATTCATTTTTATTATCAATTTTGAGCAAAAACATCTGT-----------------TTTTTTGTGTGACCTTTTGGATCTTCTATC-GACTCCTCTAACTTTGACTTC-----ATGAAGTTTC-----------------------CTCTTTTTTTTCCCATCTCGCTTCATCTTTTGCCATTCGGTGC--TACCATCTGCTTTGTATCA
s cb4.chrX              9029493 334 + 21540570 -------------TTCCGGGCCGAAATATTTACA--TCTGTACGAATTGTAAATAC--ATGTTGTTC----------------------ggaccaaaaaaagagaagcatTATTGTTT---GTTTTTGGCAGCT---AAAATTGGTGTCAGAAGGTTGAGAAGCC------------AATTTCTCATCAATGaccgcttctttttttcttctagactcaaaatatttttaaaa-tataaaact------gaaaa------------------------------------aaaaacatctgg-----------------aCTCTCATG------ACCTGATCTTTTGCC-GA-------GACTTAGTCCTCCCAAGACGAGGATTC-TATTTTGTGAAGTTTCGCTTCATCTTTCGTTTTCCCATCAATTCTCATCTGTTGCCATTC-------TGCCATCTGTTTTGTATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   941736 352 -  4500979 ACC----AGCCTCCTACTCTCGGATATATTTACA--TTTGTACGAATTGT--GTAC--ATGTTGTTC----------------------GGGTC--AACATGAATTGCattaatttct---gtttt-----gcT---AAAACTGGTGTCAAGAGGTTGAGAAGCCAAAAACGAAGCTAATTTCTCATCAATGGCcgct--------------------gaaa-----ctgaaa-tgaaaaata------gaaaaataatttttactttCGCTTCAGTTTC--TCCC----AAAAACATCTGGCTCGTTCTGACCCCTTAATTCTCA--------ATCTGATCTTTTGCC-GA-------AACTTTGACTTC-----ATGAAGGTTC-T--------aagact-------tttttctgtttcccatCATTTCTCATCTGTTGCCATTCAAC-CAGAACCATCTGTTTTGTATCA
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold630  5932703 349 + 20921866 ACCTCATAACTTCCTCTTGGTGGTCGTATTTA--------TACAAATTGT--GTACGTGTGTTGTAC-----AACGACAAAAGCTTCTCGAATC--AACAAAAATGGcatttatttct---gtttt-----gcTCCGAATTGTAGTGTCAGGAGGTTGTGAAGCC-----------TAATTTCTCATCAATGACcaat---------------ga---aaac-----tgaaaattgaaaaata------gaaaattgcagttttctttagttttcatttcattcccT-CAAATAACATCTGGac---------------cttttat--------ttttgatcgTCGGCC-AA-------ATCTTTGACTTC-----atgaagtttc-t---------------------tttttctgtttcccaTCTCTTCTCATCTGTTGCCATTCTTCGTCGAACCATCTGCTTTGTATCA
i caeSp111.Scaffold630  C 0 I 110
s caePb3.Scfld02_0      2220312 304 +  4147112 ACCTCATAACTTCCTTTTGGCAGCTGTATTCA--------TATAAATTGT--GTAC--ATCTTGTTC-----aatgaaaa---------------------------cataaatttat---GTTTT-----GCTCTGAA------TGTCAGGA-GTCGAGAAGCC-----------TAATTTCTCATCAATGACc------------------------aaa-----ttaaaactgaaaaata------aagta----atttttctcaagaattcatttcaattca--caAATAACATCTGG-----------------CCTCTAA--------ATTTGATCGTTTGCCTTT-------GACTTTGATTTC-----ATgaagtctctt---------------------tttttctcattcccaACACTTCTCATCTGTTGCCATTCCACATGAAACCATATGTTTCGTATCA
i caePb3.Scfld02_0      C 0 I 129
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=-1494.000000
s ce10.chrX             3886241 7 + 17718866 GAGTGAG
s cb4.chrX              9029827 7 + 21540570 ACATACG
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   942088 4 -  4500979 TTGC---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I

a score=906.000000
s ce10.chrX             3886248 23 + 17718866 AGAAGCTTCGAAGTATACTTTGG
s caeRem4.Crem_Contig0   942092 19 -  4500979 ----GCTTCCAAGTGTACAATGG
i caeRem4.Crem_Contig0  C 0 I 136
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9029834 51 + 21540570 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I

a score=0.000000
s ce10.chrX             3886271 32 + 17718866 CTTCTATTGTTTTATTTGTTCCTTAGTTTATG
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9029834 51 + 21540570 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=-2425.000000
s ce10.chrX             3886303 382 + 17718866 ATTTTTTGGAATTAAAGTCATACTGTCGCAGTGTGTATGAAAACTTA--CCAAG-ACAAGGTGTACGGTAGTTTTGACGTACAAATCTTTAAAAAAATGTCTAGAGACCTTTAATGTAGAAATCTGAAAAGGAGTTTATTTTTATTGAAAACCATGTTGAAAAACTTTTTGTGAAAACCTCTAAGGCTaaatggccaaattttataatgaaatgaaaatgattt-tcaagatttttatgacgacttcaaattttgaaaaaTCTAAAATATTGCCCACTTGTCCTTGAAAAAGCTGCCAGAATACATTTTTTAAAAATTGAATTCTATGCAACATACTTAGGACGTTTATCCTGCTTTTAAAAACAGT---TTAAGTTAATAGACATCGA
s cb4.chrX              9029885 232 + 21540570 attttttg-----------------------tgtGATTGCCATCTGAACCCAAGTACAAA-------------TAAAGGCATCAGTTTGCAATAATTTCACAAGAGTACTTCAAC--------------------------CTCTTGTAAACCc--------agatttctttgaaaacct----------------------tAGGATAAGATATGAATGACTTATCTagac----------------agttttgaaaatttcggtat-----CCGCTTG----------------CAAGGTACA----------ACCAAGTTATAT----CAGGTTCAGTAC--------------TAAAAATCgtgttttcaatgaaaaaatagcGA
i cb4.chrX              I 51 I 14
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=0.000000
s ce10.chrX             3886685 49 + 17718866 GAAATTACAAAATTAGGTGTCTACTATATCTTAATTCATAATGTTAATA
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9030117 14 + 21540570 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=1048.000000
s ce10.chrX             3886734 108 + 17718866 TATCTTAATTCATA--ATGTTAAAAAAATAATTTCCGACTGCTATAACCAGGACAAGTTTACGAAAATTCACTTTTAAGCAAAATTTGGCAAGTTTCTTCATGAAAATTG
s cb4.chrX              9030131  92 + 21540570 TTTCTCAAGTCCTAGGACGTACAAAAGATGAAATTTG--TGATATACTTAG---AATttcacgaaattt-----------gaaattt--caaatatttcctcgaaaattt
i cb4.chrX              I 14 I 91
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=0.000000
s ce10.chrX             3886842 123 + 17718866 GTATTGTAAAGCTAATTTTAAGTTGAAACTTTACAAACGACAAGCCCTCTCTAAAGCTAAAGTTTGCCAGATTTTCAGGCAAATTGCAACTTCCAGAAATCATTTGGGCATATTTTTCAAATA
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e cb4.chrX              9030223  91 + 21540570 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=-723.000000
s ce10.chrX             3886965 149 + 17718866 TATTGAACCAATT-TAAAATTTTGACAATTCTTCAGATTTCCCATTAGTTTTTAAGCTTTTTCG-AATGTACTTTCATATGTGAAATCACTTTTTTCAAACTCACACTTTCGAAAGTAGACTCTTCTACAAAACTTTTGCAACCATTTTCC
s cb4.chrX              9030314 107 + 21540570 tGGTGAAcgtattctaaaattttcaaaagtttctagaTAGACTATT-----TTAACTTATCCTGCAATTTCcatcaaaatctggatttACATTAT-------------------------------------GTCTTTGTCCCACTTTT--
i cb4.chrX              I 91 C 0
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeSp111.Scaffold630  5933052 110 + 20921866 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=1662.000000
s ce10.chrX             3887114 36 + 17718866 CGTAACGCAG-TTCACATGAGTATTCCGTGAAAGTTT
s cb4.chrX              9030421 24 + 21540570 -----------TTCACACGA--ATTCAgtgaaacatc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5933162 28 + 20921866 CGAAACACAGTTTCACATGA--ATTCCGTG-------
i caeSp111.Scaffold630  I 110 C 0
e caePb3.Scfld02_0      2220616 129 +  4147112 I
e caeJap4.Scaffold18142  106188 2634 -   343467 I
e caeRem4.Crem_Contig0   942111 136 -  4500979 I

a score=18586.000000
s ce10.chrX             3887150 265 + 17718866 ATGATTTTCATGATTTTTCAGTA--CTAGGTAAGTACACTTATCATAATCTGTTCAGTTTTCGGAATAATTTCAAT-TCATTTCAAGTTGTACA----------GACTGAAGAATAC----AAGTC-ATAAA---AAGAAATGTAACT-------CCCAAATC-----------CTACCAAACATCACTTATCATATATCATTTTGGTT-----TGTATTTAA-TG---CCAGCAAAACACACAAAATCAGGAAGAGT------------TGaaaa------aaaaat-----------------------------aat--attttaatCTTCATA-TATA-----TTCT-GCTCTACC-TATACTTCC
s cb4.chrX              9030445 304 + 21540570 -----------aaaatttgcGCGTACTAATTCggttcgaaa----------aattgaaattcaggatTATTTCCGTGTCATTTTATGATGTAACTGATGTAACCTTTCCCACAATTC---------------------------GACTGTTTCCATCAGAAATAAATCATAATCCAACCACAGATCAGTTATCATTAACCA-----ttcaaaattatataaaa-tgccagaaaaaaatctattaaaA--ATGAAGGATGTGCCTGGTTGcagaaaaaagca-agaaagAAAGGGATCCTTGAATAATtcataaatcaaaaatattctaaTCTGCATACTATA-----G----GCTTTACCTTCCACTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   942247 293 -  4500979 ATGAATTCCGTGAAACTTGCGTG--CTAGTTCAGTCCACAGTTCACCACTTGATTAGTATTCAAGACT---------TAGTGGCATGATGTAACAACCAATATCATCCGAACAGTTTTGGAAAGTA-GTAAAC--CAGACAGAAAAATCATTCCGTCAAAATT------TAATCCAACCATACATCAGTTATCATTTACCATTCTTTTCAACGACATATAAAA-GG--------AACTC-----------GGAAGCAT-------------------AGCA-AAAGAG----------CTAAATAAttcataaatcaaaa--attctaatCTGCATTCTATAGACTTG----GCTTTACC-TCCACTTCC
i caeRem4.Crem_Contig0  I 136 C 0
s caeSp111.Scaffold630  5933190 261 + 20921866 ------------TAGTTTGCGTG--CTACTTCAGTCTA--AATCAAGACTCGATTGATATTCAAGAT----------TAGTTACATGATGTAACA---------TTCCGAACcataactgaaaatg-atagac--aaaaaacgaaactaAGTAC-TCTGAA-T-----------CAACCATACATCAGTTATCAttcatcattatttt------catataaaacag---ggaaaaa--------------tgaagagt------------tggaaaagcca-aaaaat----------ctgaattattcatagatcaaaa--attctaatcTGCATAATATA-----G----GCTTTACC-TTCACTTCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2220745 271 +  4147112 ATGAATTGTGCGAAATTTGCGTG--CTAGTTCAGTTCACTGACCTAAACCTGTTCAGTATTCAGGAT----------TAGTAAAGTGATGTAAC--------------------CATTTGAAAACGTACAGACATAAAAAATGACAATCAG--C-TCAAAACT-----------CAATCATACATCAGTTATCATataccatttttttc-----catatatAA-AG---GAAACaa--------------ggaagaga------------tgaagaagtcagaaaaat----------ctgaattattcataaatcaaaa--attctaatctGCATAGTCTC-----GGCTTGCTTTACC-TCGACTTCC
i caePb3.Scfld02_0      I 129 C 0
e caeJap4.Scaffold18142  106188 2634 -   343467 I

a score=99297.000000
s ce10.chrX             3887415 791 + 17718866  
s cb4.chrX              9030749 802 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   942540 827 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5933451 785 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2221016 820 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  108822 779 -   343467  
i caeJap4.Scaffold18142 I 2634 I 220

a score=-15878.000000
s ce10.chrX             3888206 38 + 17718866 GGAACA---ATTCAAATGAATGTAGAATTTGATCTTACAAT------------
s cb4.chrX              9031551 16 + 21540570 -------------------------------------CTCTAATCTTTGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943367 35 -  4500979 CCCCAT---CCACTAATGAA---------AAACGTCATACCAATTCT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934236  6 + 20921866 TCTTAG-----------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2221836 32 +  4147112 TCTTCACGTCTCCTGATGAG---------AAATCGTACGAT------------
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18142  109601 220 -   343467 I

a score=302.000000
s ce10.chrX             3888244 2 + 17718866 AA
s cb4.chrX              9031567 2 + 21540570 GA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5934242 2 + 20921866 AA
i caeSp111.Scaffold630  C 0 I 83
e caePb3.Scfld02_0      2221868 31 +  4147112 I
e caeJap4.Scaffold18142  109601 220 -   343467 I
e caeRem4.Crem_Contig0   943402 0 -  4500979 C

a score=-3187.000000
s ce10.chrX             3888246 48 + 17718866 CAGCGCGGTT----TAAGAAAGGTCTGGAAAAGCTGTC-AGCCATCCGTTGTA
s cb4.chrX              9031569 45 + 21540570 TAGACGGAAT---AGACGAAA--TCTGT-AGATCCTTCTAGTAAGT--TAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943402 40 -  4500979 TAGTCTGAATGTCACACAAAA--------AGGTTTTTA-AGCaaac----gaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2221868 31 +  4147112 I
e caeJap4.Scaffold18142  109601 220 -   343467 I
e caeSp111.Scaffold630  5934244 83 + 20921866 I

a score=-6492.000000
s ce10.chrX             3888294 44 + 17718866 TCTTTATCCTCTCATCA--TTTTTTTTCATAGATTAAAG-------ATTTAGG
s cb4.chrX              9031614 28 + 21540570 --------ATTCTACATCCCCACCTTCC---TGCTCAAG--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943442 26 -  4500979 --------atttgaatt--tcatctTCC---CACTAAAG--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2221899 45 +  4147112 TCTAGATCTTTCTAgaattctgtttttcg-aaactaaaaatGGAAT-------
i caePb3.Scfld02_0      I 31 I 13
e caeJap4.Scaffold18142  109601 220 -   343467 I
e caeSp111.Scaffold630  5934244 83 + 20921866 I

a score=-4339.000000
s ce10.chrX             3888338 70 + 17718866 ------------CCTCTAGATAAATATGCTCCTTTTTTTCAAAA--------ATCTCTAGATAAACACCCCC----TCACTTGTTCAATTTGAT
s cb4.chrX              9031642 50 + 21540570 ------------ATTATCGTTAGA-----------------AGT--------TTATCCTCTTAACCGCCCC------CATTTGTTC-ATTTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943468 64 -  4500979 ------------CTTGTAGATCCA-----------------AATCGTGTGACTTATCCTCTTAAACGCCCCCAAAATCATTTGCTC-ACTTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934327 63 + 20921866 CTTC-----AAGATTATGGTTTTA----------------GAGT--------ATATCGTCTTACACACCCACATAATCAGTTTTCC-ATATGA-
i caeSp111.Scaffold630  I 83 C 0
s caePb3.Scfld02_0      2221957 68 +  4147112 TTTCCTAGGAAGCTTATGGTTTTA-AGGCAC--------CAAGT--------ATATCTTCTTAAACACCTACATAATCAGTTCTT---------
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold18142  109601 220 -   343467 I

a score=206657.000000
s ce10.chrX             3888408 329 + 17718866 -TTTAATCATCATTTTCGGAA----AAATATCTGAA---------AATTTTAATAAT---------AACT---------------ATGATATTACAGATGTCTTCGTCGACATCATCAGTGGAATCAGTGGAAGATGAAAGTTGTTCAAACGAGTGTTCAGCCTCATTCACCTTCGACACCAACAACAATAGTCGAGGGAACAACCAGGTGAACGTGAGTGTTTAACACAAAGTACCC----GGTCCCTCGGAAGGTCAT--------TTTGCAGGAGCTTGCCGAGGAAACTCACATGAAACTCAGCATCACACCAACCCGCGAATCCTTCTCGCTGAGCCAGTTGGAGCGTATTATAACGATTGGTAAGT---------------------TGGT---A--GT
s cb4.chrX              9031692 364 + 21540570 --TGGTCTACATCATTTAGAA----GAACAAGTCAA---------CCTCTccgtttt---------tgttttgttttattcAAAGTCTTATTTCCAGATGTCTTCTTCGACATCATCAGTGGAATCAGTCGAAGATGAGAGTTGCTCCAACGAGTGCTCAGCCTCGTTCACATTTGACACCAACAACAACAGTCGTGGCGACCAACAAGTGGATGTAAGT-TTAAACTCAAAGTACCT----GGTTAATTTT-------TCCGGA---GTTTTAGGAGCTTGCCGAGGAAACTCACATGAAGTTGAGCATCACGCCAACGCGTGAATCCTTCTCATTGAGCCAGTTGGAACGTATTGTAACAATTGGTGAGTAGATGGGGTGGTGGCACTAGTAGATCAGA--GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943532 341 -  4500979 ----GGCCACTTCTTATCATA----GCATAACATaa---------tcatt-----------------------------------tctattttctagatGTCTTCGTCCACATCTTCTGTGGAATCAGTTGaagatgaaagttgctcaaaTGAGTGTTCAGCTTCATTCACATTTGACACAAACAACAACAGTCGAGGAGACAATCAAGTGAATGTAAG--TTGTGCTTGAAGTACAC----GTTTATTTTCAAGGTCATTCGGCCATTTTTTAGGAACTCGCTGAGGAAACTCACATGAAATTGAGCATTACGCCAACGCGTGAATCCTTCTCATTGAGTCAGTTGGAACGCATTGTAACAATTGGTGAGTGATTAGTGAAGGGATAGTAG-AGat---a--ga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934390 329 + 20921866 ----AATAACGTTTTCCTGG--------CTACCCAA---------ctcattc---------------------------------ttatttttccagatgtcCTCCTCGACATCATCAGTTGAATCAGTTGAAGATGAGAGCTGTTCAAACGAGTGTTCAGCTTCATTCACATTCGACACCAATAACAATAGTCGAGGAGATAATCAAGTGAACGTGAG--TTTGGCACAAAGTACAC----GGTCATTTCGAAGGTCATCATTTCGTTTTGCAGGAACTTGCCGAGGAAACTCACATGAAATTGAGCATTACGCCAACGCGTGAATCCTTCTCATTGAGCCAGTTGGAACGCATTGTAACAATTGGTGAGT-----------GTGTAGTACGATGT---G--CT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222025 337 +  4147112 ------TGAGACTTTCTCGA----------ATCTAAAAATGGTAgttatttg---------------------------------ttatttttctagaTGTCTTCTTCGACATCATCCGTGGAATCAGTGGAAGATGAGAGTTGCTCAAATGAGTGCTCAGCTTCATTCACATTTGACACCAACAACAACAGTCGAGGAGATAACCAAGTGAACGTGAG--TTTAGCGCAAAGTACAA----AACGATTTTCCAAgtcattttgtcattttatAGGAGCTTGCCGAGGAAACTCACATGAAATTGAGCATAACGCCAACGCGTGAATCCTTCTCATTGAGCCAGTTGGAACGTATTGTAACAATCGGTGAGT----------GGTGTAGTACGGGGT---GGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  109821 351 -   343467 TTTTTCCATCACTTTCTAGAATGCCAAAAAATCCAG---------ATTCTTAATATTTTAAatggatgttttttt----------tttctattttagaTGTCCTCCTCCACATCATCCGTCGAATCCGTGGAAGACGAAAGCTGCTCGAACGAGTGCTCGGCGTCGTTCACGTTCGACACCAACAACAACAGTTGCGGAGACAACCAAGTGAGCGTACGT-CCTGGTGCAAAGTACTCGGGAGGTCATTTGGAAGGTTAA--------TTTGCAGGAACTCGCTGAGGAAACTCACATGAAACTAAGCATCACACCGACCCGCGAATCGTTCTCATTGAACCAGTTGGAACGCATTGTGACAATTGGTGAGT-----------GAGTTGA---------------
i caeJap4.Scaffold18142 I 220 I 100

a score=-11820.000000
s ce10.chrX             3888737 52 + 17718866 TCAGAATTCTTTCGTTGAAATTTGATTTCACT---TTCTGGGTGCGGA-----------------ATAGTCT
s cb4.chrX              9032056 52 + 21540570 TTTGAATCGtact------atttttgttcagt---tcGTAGGTTGA--AAGTCTAGT--------A-GATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943873 61 -  4500979 tttcaaattttctatagACATTTGGAATCATT---TTATAATTCAAGTAAATCGGGA--------ATTACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934719 65 + 20921866 TTTCAACTTTAAT-----CACTTGTGTTGATTGATTTTTC--CGGGGGAAATATAAtgggaaaaaacaaaat
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222362 71 +  4147112 ATTAAAATTTCATATGCATGCtttattcaattgaattcTCGTTCCGGGAAATTGAAT-CGAGGAAATACTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  110172 100 -   343467 I

a score=94694.000000
s ce10.chrX             3888789 146 + 17718866 TTTCT---------GTATCGTTTACAAGAAGGGTTA-GAAG--GCAAACA------------CGGTTTCGAACTCTCGGCTGGTAG------ACCCACCTTGAGTCTC---GCGGTTATATAAACAACTGATTTTTGTCAACACAAT-TGCG-GGCGAACTCAAG-GAAGCTTGAGTACGGG
s cb4.chrX              9032108 151 + 21540570 TTTAT---------GTATCGGTTAC---AAGGTTTT-TAAT--GCAAATA--GTG-----GACGATTTCGAACTCtcagttttcctttttc-ttttctc---agtCTC---GCGGTTATATAAAcaactga-ttttttcaacacaATCCGCGAGACGAACTCAAC-GAAGCTTGTGGATGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   943934 158 -  4500979 TTTCT---------GTATCGTTTAC---AAGGTTTTAGAAG--GCAAATA--TCGGGTGAGACGGTTTCGAACTCTCGGTTAGTCTTTTCT-TCTTGCCTTGAGTCTC---GCGGTTATATAaacaactga-ttttttcaacacaat-TGCG-GGCGAACTCAAT-GAAGCTTGAGTATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934784 150 + 20921866 ttttt---------gtatcgTTTAC---AAGGTTTA-GAAG--GCAAACA--GTGAA---GACGGTTTCGAACTCTCGGTTCGTCT------CGTTGCCTTGAGTCTC---GCTGTTATATAAacaactgatttttttcaacacaaA-TGCG-GGCGAACTCAAT-GAAGCTTGAGTATGTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222433 157 +  4147112 TTTTT---------GTATCGTTTAC---AAGGTTTA-GAAG--GCAAATAGTGTGGG---GACGGTTTCGAACTCTCAGTTAGTCTTTCTTGCGTTGCCTTGAGTCTC---GCGGTTATATaaacaactca-ttttttcaacacaat-TGCG-GGCGAACTCAAT-GAAGCTTGAGTATGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  110272 158 -   343467 TTTCCGGAACGAGAGTATCAATTAC---AAAGTTTA-GAAATCGCAAATA----------GACTGTGT----GTTTTAGTCCGATTTAACC-TGTGGCCTTTTTTCCCGTTGCGGTTGTATAAACAACGGA--ATTTTTAACACAAT-TGCG-GG-AAATTCAATAAAAGATTGAGTACGCG
i caeJap4.Scaffold18142 I 100 I 52

a score=-2687.000000
s ce10.chrX             3888935 76 + 17718866 TTATCGAAA-------AAAACCAAA----AAAAGTAATCGAGGGAAAG-----TT---------CCTGGCTTTAAT--GTCTTGTTCACA-------------TTCGAGTTAATTA
s cb4.chrX              9032259 93 + 21540570 TTTTTAGTCTAGGTGAAAAGTCAAGAAGAGTGGGTGATAGAGGGAGCt-----cc-----agatttcagattttttaagttATGTTAATG-------------TTAGAAAAGTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944092 90 -  4500979 TTTTGAAGA-AGGTGAAAAGTCAAG--GAGGGGGTGATGGGAGGGATG-----ACTAAGAAATTTCCAGAGTT-----GTTTTGTCTata-------------tttgaatgttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5934934 98 + 20921866 TTTTCAAGA-AGGTGAAAAGTCAAG----AAGGATGACGGGGGCCCAA-----TT-----TATTTTAAGATTTCC---GttctttttctagctttCTATCGTCTTTGAGATTAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222590 89 +  4147112 TTTTAAAGG-AGGTGAAAAGTCAAG----AAGGATGACGATTGAAAagatatttt-----catttttagatttca---gttttccgtaaaaattt--------ttttaga------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  110430 52 -   343467 I

a score=-32433.000000
s ce10.chrX             3889011 154 + 17718866 TTAGGTATCAAATATTTTTCAT--AGTTTTCATAGAGTTT------CCCAATTATCAATT---------------ATCAAA-------------------------------CAAAGTTTATCTTAGGTG---CCATATTTTT------CCAATGAGG----------GGGCGAACCCATCAGTATACAAGTTTAA-----TTCCCGCTTGATGCGATTATCAATTAACAAA
s cb4.chrX              9032352 127 + 21540570 GTATCTCTC---GATCTCCCAT--AGCTCTCAC----TTT------TCCAAGATTCA------------------TTAGGA---------------A---CAAAACTACGAACAtcgttcttttttcagt---ttat---------------------------------------caATCTGC---CCTCT---------CTCCCGTTTCATGCGATTAAGAATTAACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944182 145 -  4500979 ttgtcttct----------------gcctaaat----att------ttgaaaataaa------------------tttaaa-----tgcTGATCTTA---GATGCCCACTACTAAGTTTTCTTATTGAGt---ctatt-----------tcattaa----------------aaaccaaACTCCGAACATCTTTAA-----TTCCCTTTTGATGCGATTAAGGATTAACAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935032 137 + 20921866 TTATTACTTCTGGAAGCCTTGATGATCTTAGAT---GCTT------TC----CTTCA------------------TTCAAA------------------------CTA----CTTAGTTTTCcatcca-----tcattt----------tcattta----------------gaaTCAAACTTCGAACACTTTTAA-----TTCCCGTTTGATGCGATTAAGGATTAACAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222679 157 +  4147112 --gtttcgTAGAGAAGTCTCAA--AGTTTTGAT----CTTAGATGCTC----atttaatt-------------tctttaaa------------------------ct-----tttagtttttcgtctattccttcatttcttctttttctcgttaA----------------GAATCAAACTTCGAACATCTTTAA-----TTCCCGTTTTATGCGATTAAGGATTAACAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  110482 196 -   343467 ---------TTAGAAGCCATAC--AATCGTAAT----GTA------TTCTACATTCATGTTCTCCGGTCTTAATCCTCAAAAAGAGCACTGATCTTAGTTGATATATCGTGTCGCTGTCCTTTTttccgt---tcttttttttccgtgtttgaaGAAATTTGAAACTCGGAAAAACCAATCTTTAAAAAGATTAAAAGATCTGTCTGTCAGTTGC------------ACAAA
i caeJap4.Scaffold18142 I 52 I 41

a score=2753.000000
s ce10.chrX             3889165 41 + 17718866 C---------CATCGATT-------------------TCAA------ATCAATAAAGCTTTT----GC-----ATTCAACTATT
s cb4.chrX              9032479 71 + 21540570 ACCACCTTCATATcagttgaaagaaa--aaaaaccgaccga----------acaaaaatttttga-gcctCTAGTCTCGGTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944327 80 -  4500979 ACTTTTTGCGTATCAATTGAATGGAATGCAAGGCCAACCAACTGGC-AGAGACATAGTTCGTAGA-GC--CTAGTCTTGGTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935169 74 + 20921866 CCC-------TATCAATGAAGAAAGATGCAGGGCTAACCAACTGGCAAAAGACAAAGTTCGTTGA-GC--CTAGTCCTGGTAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222836 73 +  4147112 ACC-------TATCAAATGAATGGAATGCA-GGCCAACCACCTGGC-AGAGACAAAGTTCGTAGAGGC--CTGGTCTTAGTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  110678 41 -   343467 I

a score=95644.000000
s ce10.chrX             3889206 120 + 17718866 CAACTTCGGCGC-CGCACTCAGTCT------TCC-----GACCAATATTTACCATGTTGAAATGCTACCGTATGACGTAAACCATTGTGTTCTTCACACCCGCC--TAGCCA------GAAAATTAATCAAACGAGCTT---------T
s cb4.chrX              9032550 131 + 21540570 CAACTTCAGCGC-ACTCGTCTCTCG------TTCCCCCGACCCAATATTTACCATGTTGAAATGCTACCGTATGACGTAAACCATTGTGTTCTTCACACCCGGCGGTGGCCGATGGGTGAAAATTAATCAAACGAGC-----------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944407 140 -  4500979 CAACTTCAGCGc-actcctctctctcttttctccacTCAGACCAATATTTACCATGTTGAAATGCTACCGTATGACGTAAACCATTGTGTTCTTCACACCCGCC--TAGCCAG-----GAAAATTAATCAAACGAGCTTCCGAGCAA-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935243 127 + 20921866 CAACTTCAGCGCaactcctctctct------ttcc----gcCCAATATTTACCATGTTGAAATGCTACCGTATGACGTAAACCATTGTGTTCTTCACACCCGTC--TGCCCAG-----AAAATTTAATCAAACGAGCTCCCGA-----T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2222909 132 +  4147112 CAACTTCAGCGCAACTCCTCTCTCT------TTCC----GACCAATATTTACCATGTTGAAATGCTACCGTATGACGTAAACCATTGTGTTCTTCACACCCGCC--TAGCTAG-----GAAAATTAATCAAACGAGCTTCCGAGCTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  110719 123 -   343467 cgcttttacCCCCGCGTTCTTCTCT------TTCC----GAATAATGTTTACCGTGTTGAAATGCTACCGTATGACGTAAAGCATTGTGTTCTTCCTTTCGCAC--TCTCGCG-----CACAATTAATTAAACTAGCTGC---------
i caeJap4.Scaffold18142 I 41 I 237

a score=6089.000000
s ce10.chrX             3889326 150 + 17718866 CTGTGCGACAGTCAAAATTTT----CACATAAAATCGTAGT-----ATTCATTCTTATGT-----GC----------CACCAGGAACAAAAATTTTTTGACAAA-----------------------------------------------AAACAAATA-TAAG---------------------------CTTATCTTTCT---GCAAA-ATCGA----------GCTCATGATC---------TCTGAAATTTCA------------ACAAACTGAAAATC-
s cb4.chrX              9032681 244 + 21540570 TTTGCCGGCG-----GTCGCCGATACAGATCAAATGAT--CTGCCGTTTCATAATGAAGTGTAGTGGAATGATTTACAACCGGgaacaaaaacttttgaacaaa------------ATAGACAGCTTTGcttcaaaag-------------aaaataaca-gaaaatgagccgaaaattgatagaaattcACCCCTTTCTTGCAAACCGACGCCCGATTGAT-----CCTtgcgatttaaaaaaaaactgaaatctagaatcaacaaa--aaaaactgaaaatc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944547 221 -  4500979 TTTTTCGACGCGTAAATTTGCGGTGCAGATCAAATGAT--C-----CTTCATAATGAAGTGTAGTGA----------CACCAGGAAcaaaa-------aacagg------------gaaaacaG--------CGAAAGCG---GGTGtaaagaaataaca-aaaactgcGTCTAAGATTGATAGTTGTCTTCCTCGCTCCTCGGGTTCTAT-CCAAACTGAC-----CCTCTAGATC---------ACTGGAATTTCGAAAcggaaaactaaaaactgaaaGCC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935370 212 + 20921866 TTTTTCGACGCGTAAATTTGCGG-ATAGATCAAATGAT--C-----TTTCATAATGAAGT-----GA----------CACAAGGAacgagg-------aaaaaa-----attgaagaaaatagg--------aGGGGGTGTTaggtg----aaaaaaacagaaaagtgaGTAGAAGATTGATAGCTTTCatcctcatttcttc---tcgat-gGCTACTTATTTCAACCCAATGATc---------aatggaatttt-------------gaaagttcgaAGTTT
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2223041 215 +  4147112 TTCTCCGACGCGTAAATTTGC------GATCAAATGAT--C-----CTTCATTATGAAGTCTAGCGA----------CAccaggaacaaaa-------aaaaaacgaacctaaaagaaaaatag--------agggggtgttaagt-----aaaaaaaca-aaaagtgagttgaaGATTGATAGCTCTCATCCTTATTCCTCC---CCGCT-TTCAACTGACCCGCGTCTGTTGATC---------AATGACATTTC-------------gagatttcaaaacta
i caePb3.Scfld02_0      C 0 I 155
e caeJap4.Scaffold18142  110842 237 -   343467 I

a score=-4359.000000
s ce10.chrX             3889476 22 + 17718866 ATTTCCACTTGATAGATGATTT-----------
s cb4.chrX              9032925 14 + 21540570 aac--------acCGCTGATGT-----------
i cb4.chrX              C 0 I 141
s caeRem4.Crem_Contig0   944768 22 -  4500979 AGCGGGTTCCAATTgcaaaact-----------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5935591 22 + 20921866 -----------ATctagaatctgaaaacaatcc
i caeSp111.Scaffold630  I 9 C 0
e caePb3.Scfld02_0      2223256 155 +  4147112 I
e caeJap4.Scaffold18142  110842 237 -   343467 I

a score=-2477.000000
s ce10.chrX             3889498 24 + 17718866 ---GTTTTCAAATCTTTT--------TTTTTCGGA--
s caeRem4.Crem_Contig0   944792 23 -  4500979 gtttttttc----ctctg--------ATTTTTGGA--
i caeRem4.Crem_Contig0  I 2 I 82
s caeSp111.Scaffold630  5935613 31 + 20921866 --GAATCTC----TTCTGCAACGAACATATTTCCATG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2223256 155 +  4147112 I
e caeJap4.Scaffold18142  110842 237 -   343467 I
e cb4.chrX              9032939 141 + 21540570 I

a score=176.000000
s ce10.chrX             3889522 20 + 17718866 GTTGAAGGTTGAAGGTTCCT
s caeSp111.Scaffold630  5935644 16 + 20921866 GTTG----TTAAACTTCCTT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2223256 155 +  4147112 I
e caeJap4.Scaffold18142  110842 237 -   343467 I
e cb4.chrX              9032939 141 + 21540570 I
e caeRem4.Crem_Contig0   944815 82 -  4500979 I

a score=-2576.000000
s ce10.chrX             3889542 33 + 17718866 GATGGGTCTTACAAAGTT------TAAC----AAG----ACCAGTTT-
s caeSp111.Scaffold630  5935660 47 + 20921866 ATTCAATGACAcaaatctcttttctaaCCCTGAAGTTACATCAGCAT-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  111079 30 -   343467 aATGGGT----TAAAGAT------TGAT----AAT----ATTTGCTTT
i caeJap4.Scaffold18142 I 237 C 0
e caePb3.Scfld02_0      2223256 155 +  4147112 I
e cb4.chrX              9032939 141 + 21540570 I
e caeRem4.Crem_Contig0   944815 82 -  4500979 I

a score=-1773.000000
s ce10.chrX             3889575 10 + 17718866 --ATGTTTTTAC
s caeRem4.Crem_Contig0   944897  8 -  4500979 ----ACTTTTTG
i caeRem4.Crem_Contig0  I 82 I 13
s caeSp111.Scaffold630  5935707 10 + 20921866 --CGACTTTTAC
i caeSp111.Scaffold630  C 0 I 7
s caeJap4.Scaffold18142  111109 10 -   343467 AGCTGTGTTC--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2223256 155 +  4147112 I
e cb4.chrX              9032939 141 + 21540570 I

a score=10145.000000
s ce10.chrX             3889585 28 + 17718866 TTGCTTGCGAGTTTTGTCAATTTCCGTT
s caeRem4.Crem_Contig0   944918 28 -  4500979 ATGTGTTTTAGTTTTGTCAGTTTCCGCC
i caeRem4.Crem_Contig0  I 13 I 12
s caeSp111.Scaffold630  5935724 28 + 20921866 TTATGTGTTAGTTTTATCAGTTTCCgcc
i caeSp111.Scaffold630  I 7 I 9
s caePb3.Scfld02_0      2223411 28 +  4147112 TTGTGTGTTAGTTTTGTCGGTTTCCGCC
i caePb3.Scfld02_0      I 155 I 6
s caeJap4.Scaffold18142  111119 28 -   343467 GCGTTCACGTGTCCCTTCGCTTTCTTTT
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9032939 141 + 21540570 I

a score=-2758.000000
s ce10.chrX             3889613 12 + 17718866 AGA------------------------TGAGA--------AATC
s cb4.chrX              9033080 19 + 21540570 aga-------------------------caaaaaatcagCAATC
i cb4.chrX              I 141 C 0
s caeRem4.Crem_Contig0   944958 11 -  4500979 AGA-------------------------CGCA--------AATC
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  5935761 11 + 20921866 aag-------------------------aaga--------aatc
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2223445 11 +  4147112 AGA-------------------------GTAA--------AATC
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18142  111147 36 -   343467 AGATCAAGGAAATATTTTAAGTCTGTCTGGGA--------AATT
i caeJap4.Scaffold18142 C 0 I 100

a score=3413.000000
s ce10.chrX             3889625 41 + 17718866 AGCT------GTCAGTTGC-AACAATCA---GT------------CGTCGTCGGCGTCATATC
s cb4.chrX              9033099 56 + 21540570 AGCTGCCCAAACTACCTGCAA--AATCG---GTCCTCGCTCCCATCATATCC--CATCATACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   944969 46 -  4500979 AGCTGCCT--GCCAGTTGC-A--AATCA---GTCGTCTTCC----CATATC-----TCATATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935772 39 + 20921866 agcTGCCT--GCCAGTTGC-A--AATCATCCGT------------CGTCAT-----TCATA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2223456 38 +  4147112 AGCTGCCT--GCCAGTGGC-G--AATCA---GT------------CATATC-----TCATATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  111183 100 -   343467 I

a score=130245.000000
s ce10.chrX             3889666 432 + 17718866  
s cb4.chrX              9033155 487 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   945015 522 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5935811 520 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2223494 489 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  111283 560 -   343467  
i caeJap4.Scaffold18142 I 100 I 286

a score=-7083.000000
s ce10.chrX             3890098 77 + 17718866 CAGTT----------GATGTGGGGTAACG-----AGTATGTT----TTTAAACCCGGAACTTCCACAATTGGA-------AATCTATCAAATATTCATTACAT-----
s cb4.chrX              9033642 52 + 21540570 T-----------------GGAGGGGACA------TGTAAACTTCTTGTTGAACCC------------ATCAAAAT--------------AATGTTC--TAGAT-----
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   945537 83 -  4500979 TAGTCAGAGTTGATGGACgggggggAAA------AGGA--------GTTGAACCCGGAATTG--GAAGTTAAAACA----GACCGATCAAATATTCATTAAAT-----
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5936331 87 + 20921866 TAGTCAAAAATGTT-GATGGAAACGAGAGAAACAAGTAAACTT---TTTGAACCCGGA---------ATCGGAAT-----TGtcaattgaaaatac---aaatggCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2223983 86 +  4147112 TAGTCAAAAATGTTAGATGGAAAGGAGAG-----AGTAAACTT---CTTGAACCCGGA---------ATTGAAGTAGTGGAGTCTATCAGAAATTC-----ATTGTAC
i caePb3.Scfld02_0      C 0 I 93
e caeJap4.Scaffold18142  111843 286 -   343467 I

a score=-5658.000000
s ce10.chrX             3890175  5 + 17718866 ------ATT-TA----------------------------
s cb4.chrX              9033697 21 + 21540570 ATTTGTATTCTGGGAGAGtt-------------------c
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   945623 39 -  4500979 ATTCCTCTT-TGGCAGTATTTTTAGTATTTGTCTGGTTAC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5936418  5 + 20921866 ------CTT-TA----------------------------
i caeSp111.Scaffold630  C 0 I 96
e caePb3.Scfld02_0      2224069 93 +  4147112 I
e caeJap4.Scaffold18142  111843 286 -   343467 I

a score=-447.000000
s ce10.chrX             3890180 56 + 17718866 CGAAAAAA-GTTTGAAGTA--------ACATTTGATTTTTCGATCCTGGTTTGTTTTTTTTTG--------TC
s cb4.chrX              9033718 73 + 21540570 caaaaaccaaattgAAGCCTGATGTAAatttctggctttttgattttcttttattttgtcctgaaagctgttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   945662 45 -  4500979 CAAAAACC-AATTGAAGCC------------CTGTCGCTTTGGATT---------------TGAATGGTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2224069 93 +  4147112 I
e caeJap4.Scaffold18142  111843 286 -   343467 I
e caeSp111.Scaffold630  5936423 96 + 20921866 I

a score=672.000000
s ce10.chrX             3890236 47 + 17718866 TATTTTTC---------CAATACACAATGGGGTTCCTCTTTTCA-CTGCAGTTACCT
s cb4.chrX              9033791 48 + 21540570 tcaattttcattcaaaattaaaaataatagaaatccGGCGTTCC-TTCT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   945707 40 -  4500979 TGTCTTTC---------TTAGAAATAATAAGAATCCGGTGTTCTATCCT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2224162 47 +  4147112 TGTTATTC---------TTATGAATGATTATAATCCGCTGTTCA-TTCTATTCACCT
i caePb3.Scfld02_0      I 93 C 0
e caeJap4.Scaffold18142  111843 286 -   343467 I
e caeSp111.Scaffold630  5936423 96 + 20921866 I

a score=-2941.000000
s ce10.chrX             3890283 43 + 17718866 TCCATTGAAAG----CTGAAAGCTGGCGGAGT--CATTGAGCT--------------TGGAAG
s cb4.chrX              9033839 51 + 21540570 CCAATTCAAAAACAGCTGATATCCA--AGAAG--TCATAAGCC--------GCTagctgcaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   945747 55 -  4500979 TCTATTCAAAA----CTGATGTCGA--GCAAG--TCATAAGCCTTTAGTCTgcaaaccacaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5936519 35 + 20921866 -----TTCATA----GTCAGCT-----GTAATCGCCAAAAgtc--------------tgcaaa
i caeSp111.Scaffold630  I 96 C 0
s caePb3.Scfld02_0      2224209 39 +  4147112 TCCGTTCGAAA----GTCAATTC----ACAAT--TCATaagtc--------------tgcaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  111843 286 -   343467 I

a score=37097.000000
s ce10.chrX             3890326 216 + 17718866 AAAAA---------CGTCTTCCTTTGTCACCA-TTCTGTTTA-TTTCCCAAGAGAAATTCAGTTTTTC-----------GTAATGCGGGTCCGACTCGAGCCGTG----------CTCCGGAA---GGAG-----------------GAAGAACAAAAAAAGTAATGTGCGacacacacacacac----acaca--cacaAAATT--TTGATGGGGCCACTTTTGATAAATGTGT--------GAGAGAGGGTGCCAGAtttg-aagatttttttgaagattttt
s cb4.chrX              9033890 190 + 21540570 aaaaa----tttgcaa-gcTCTCGTGTCaccattttcttttattttcccaTGAGAACCTCACTTCCttttttt--------------------------------------------------------------------------GGAGCAC-AAAAAAGTAATGTGCGACATATAGCCAGA-----AGACA--CTCAAAAATAGTTGATGGGGCCAC-TTTGATAAATCTGC--ATCAAAACGAGAGtttgtcagatttt-----tttgagggatttttgaa
i cb4.chrX              C 0 I 215
s caeRem4.Crem_Contig0   945802 219 -  4500979 aaaaaactttctgcaGCTCTCTTTTGTCACCA-GTTCTCTTA-TTTCCCATGAGAAATCCGCCATTTTTTCCC------GTAATGTGGAACCGGGCCGTCTCGTCAG-------CTCCGGATGGC-GAAA-----------------GAAGAGC-AAAAAAGTAATGTGCGAC------------------ACA--CACAAAATT--TTGATGGGGCCAC-TTTGATAAATGTGT--------GAGAGAGTGTGTCAAATTTG-AGGacttgacaaaaaattgta
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5936554 191 + 20921866 aaat-----------------ttttgtcaccatttcttttca-tttcccaTGAgatctctgttttttttccttca----gtAATACAAAgtcg-------tcgtctt-------cttctgagatctggaa-----------------gaagagcaaaaaaagtaatGTGCGAC------------------aca---acaaaatt--ttgatggGGCCAC-TTTGATAAATGTGT------GAGAGAGTGTGTGTCAGAGCCT-----Ttcttcagaaa------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2224248 204 +  4147112 aaatt----tctgcaGTTCTCTTTTGTCAccattttctattc-tttcccATGAGAATCcagctttttttgctttgcttCGTAATGTGAAGG------------------------GTCCCGGATA-GAag-----------------gaagagc-aaaaaagtaatgtgcgac------------------acacacacaaaatt--ttgatgggGCCAC-TTTGATAAATGTGT------GAGAAAAAGTGTGTCAGattttgaagactttttggaaa------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  112129 260 -   343467 -AAAAacgcttgttttttttatattggCACCA---TTCATCA-TTTCCCAAGAGAAATTCGTTTCCTTTTTTC------GTAATGTGGAGCCGTCGGGACTTGCAAGCTCAATTCTGCCTGCAAT-GGGGTCGGGCTGACTTGACTTGCAGCAC--AAAAAGTAAGAtgggctctttttttttcttgtgggacA--CACAACATT--TTGATGAGGCCAC-TTTGATAAATGTGAGAAGGAGAAAGAGAGTGTGGTGACcccg----aattttgaaaaaataa--
i caeJap4.Scaffold18142 I 286 C 0

a score=-1486.000000
s ce10.chrX             3890542 13 + 17718866 ttTGCAGAAAAAA--
s caeRem4.Crem_Contig0   946027 13 -  4500979 ttggtaaaaaaag--
i caeRem4.Crem_Contig0  I 6 I 42
s caeSp111.Scaffold630  5936745  8 + 20921866 -----gaaaaaaa--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2224452  8 +  4147112 -----aagactTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  112389 13 -   343467 --aataaagaaaaac
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9034080 215 + 21540570 I

a score=-6038.000000
s ce10.chrX             3890555 43 + 17718866 TG----ACTA---------GTCAAATCCAGAGAGGAAGT---TTTC--TCCAAACATAATT
s caeSp111.Scaffold630  5936753 42 + 20921866 cg----gctT-------------AAAGAAATAAGGAAGTGTCGTTC--TTCATTTTGTATT
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2224460 52 +  4147112 TGTTAtgctt---------ttgaacaaaaataaggAAGTATTATTCATTCCATGTTTTATT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  112402 37 -   343467 --ttCCGCTTATATGAAGTttgggaaaaacaaaacaact----------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9034080 215 + 21540570 I
e caeRem4.Crem_Contig0   946040 42 -  4500979 I

a score=-25482.000000
s ce10.chrX             3890598 168 + 17718866 GAGCTCTTGAGAATGTATTCTTGAA----GTGTGTGCT-------TGTGAAAATGACATTGTAAGAAAT-------ATGCTTC--------------------------------CAGTTTGAA---------TATTATA--------------ATTACAA----------CTTCCAAGCCATATATCTGAGGTGAT-----TGAGAGAGTCA-----ATCAATGTTATAAAACAT-------TTTCTGCT---AAACATATCCGTTTGCG
s caeRem4.Crem_Contig0   946082 258 -  4500979 AGCCTCTTGAGAAACTAAACAGAAACTGGCTAAACTCAAGTATGGTGTGCAAATGACATTGTAGGAAACCGAAT--GTGTATAACGCTTTTTATTGTAGT----GTATACTTGAACAATACAAATTTATATTATATAATAGAAGAGGTACATTTATTGTATCCTCTGTGTCTTTCAAATACATATCTCCCAGGCAATCgtagtgaaaaaaac------atcaattttataaaatatcTCTTT-CTCATGCTCACGAAAATATCCATCTGCG
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold630  5936797 197 + 20921866 AGCCTCTTGAGAAACTAAACAGAAA----CTATATTTGAG-----TGTGCAAATGacagttttagaaaaaa-----atgtata--gTTTTGAAGTG-----------------GACACTTTTAA----------TTCTTAGTCAAGGGACTAGCACTTTGG----------TTTTTATC---TGTTGAGCAGATGAT-----TTCATGAATC------atcaattttataaaatat-------aTCATGCGTCCGAGGATATCTTCGTGCG
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2224514 238 +  4147112 AGATTcttgagaaacaaaacaaaga----ccACACTCGAGCA---TGTGTAAATGACATTGTAAGAAAAAGATTGTATGTATA-CATTTTCAAGTGTTGCTTTGGTATACTGaagcaatttcaa---------tttcatattctGTTGGCAGGGGTTTTAG-------AACGTTTTAACA-ACGTATACCAGATGATC--ACCACAGAAAAC------ATATACTTCATAAAACATTTCTCTCATCATGCTCCCAAGAATATCTGTCTATG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  112439 146 -   343467 -------ggAAAGAAGTTCCAAGGATTTAGTATATGTTG------TGTTGAAGTGTTTTCTCTTGTCGTG------ATGCttt-----------------------------------ttttAG---------TATCA----------------ACTCTCT-----TTCTCATTTCATCCCAATTATGGCATTTGTGCCTACGCAGAAAAGCACAACCACCAATTCAACA-----------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9034080 215 + 21540570 I

a score=253875.000000
s ce10.chrX             3890766 465 + 17718866  
s cb4.chrX              9034295 404 + 21540570  
i cb4.chrX              I 215 C 0
s caeRem4.Crem_Contig0   946340 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5936994 443 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2224752 447 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  112585 470 -   343467  
i caeJap4.Scaffold18142 C 0 I 51

a score=-17339.000000
s ce10.chrX             3891231 45 + 17718866 AGCGC--TTGTGAA-----TCGGGAGACAACGTTTT------AAATATATAATTTTGA
s cb4.chrX              9034699 38 + 21540570 CTGAT-TTTTTC-------TGGGAA-------CTTATTCGTTAAGCCTAAAGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   946787 34 -  4500979 gaaaa-actata-------tcagaa-------tttg------aaaactaaaaat---a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5937437 37 + 20921866 AAACT--TTATACACAtctcggaaa-------tttt-----gaattttga-------t
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2225199 37 +  4147112 AAGACAATTATAAG-----AGGGGA-------TTTC-------ATtgtaatagtt--t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  113055 51 -   343467 I

a score=88916.000000
s ce10.chrX             3891276 139 + 17718866 TTTTCCAGGTATGCCAGTGAAAAAGATAGTAATCATTTGTACATGATCATGGAATTTGTGCCAGGAGGTGAAATGTTCTCTTATCTCAGAGCATCACGGTGAGTGGTTA----AGGATT----AGTAATAG--------------------AGCATATGGATTAAGA
s cb4.chrX              9034737 125 + 21540570 -TTTCCAGGTACGCTTCAGAAAAGGACAGCAACAACTTGTACATGATTATGGAGTTCGTTCCAGGAGGTGAAATGTTTTCGTACCTCAGAGCATCGAGGTAAG-----------------------------------------CAGAATGGGACTTTAGAATTGTG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   946821 150 -  4500979 ttatttaggTACGCCAGCGAAAAAGATAGCAATAACTTGTATATGATTATGGAATTCGTGCCAGGAGGTGAAATGTTCTCGTATCTCAGAGCATCAAGGTCAGTTATGG----TGGATT----AGTCGAAA---------GTGACAAGAAGAGCCTTTGAAATGGGA
i caeRem4.Crem_Contig0  C 0 I 46
s caeSp111.Scaffold630  5937474 149 + 20921866 tattGAAGGTATGCTAGCAAAAAAGACAGCAATCACTTGTACATGATCATGGAATTCGTGCCAGGAGGTGAAATGTTCTCATATCTCCGAGCATCTAGGTGAGTTATG------GGATT----AAACAAAA--------CGAGAGAAGTTAAGCCTTTTAAATGGGA
i caeSp111.Scaffold630  C 0 I 20
s caePb3.Scfld02_0      2225236 157 +  4147112 ttttctaggtatGCTAGTGAAAAAGACAGCAATAACTTGTACATGATCATGGAGTTCGTGCCAGGAGGTGAAATGTTCTCATATCTCAGAGCGTCGAGGTGAGTTATG------GGATT----AAACAAAAGAgatgggagaaaaaagttaagacTCTGAAATGGGT
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold18142  113106 154 -   343467 TTTTTTAGGTATGCTAGCGAGAAAGACGACAATCATCTGTACATGATTATGGAGTTTGTTCCCGGAGGCGAAATGTTTTCATATCTTCGCGCCACGAGGTGAGCAAAGAAGATAAGATtaccaaaacaaaa-------caaatctaAAAACAGCTTTTAGA------
i caeJap4.Scaffold18142 I 51 C 0

a score=-9311.000000
s ce10.chrX             3891415 24 + 17718866 -----------------AATTCGTTCCAAAAAG-------------------------------TACATGGG
s cb4.chrX              9034863  5 + 21540570 ----------------------------AATGT---------------------------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5937643 24 + 20921866 -----------------TTTTTGCTCAGAATAG-------------------------------TACAAGGG
i caeSp111.Scaffold630  I 20 I 15
s caePb3.Scfld02_0      2225421 23 +  4147112 -----------------CTATT-CTCAAAATAG-------------------------------TACAAGGG
i caePb3.Scfld02_0      I 28 I 13
s caeJap4.Scaffold18142  113260 72 -   343467 AATTCaagggaaaacagaaatttacCATAATAAACGGTTGACAGTGAGGTTTTCGGAAATGGAATGAATGGG
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   946971 46 -  4500979 I

a score=68995.000000
s ce10.chrX             3891439 118 + 17718866 --------------------------ATTT------CTTTAATGTGTTTC---------------------------------------TTTTCTGCAGATCATTCTCGAATTCGATGGCTCGTTTTTATGCATCAGAAATTGTTTGTGCTCTGGAATACATTCACTCATTGGGAATTGTGAGTAAAAA
s cb4.chrX              9034868 108 + 21540570 -------------------------------------ACTCCTCTAATCC---------------------------------------TTTT---TAGATCCTTCTCCAACTCAATGGCCCGCTTCTACGCTTCAGAGATCGTGTGTGCTTTGGAGTACATTCACTCCCTCGGAATTGTGAGTCAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947017 115 -  4500979 --------------------------ATCA------TTCTCATCCATCAC---------------------------------------TTTT---CAGATCCTTCTCAAACTCGATGGCCCGTTTCTATGCCTCAGAGATCGTTTGTGCTTTAGAGTACATCCACTCTCTTGGAATCGTAAGTCGAAG
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold630  5937682 101 + 20921866 --------------------------atta-----------------------------------------------------------ttta---cAGATCTTTCTCAAACTCGATGGCCCGTTTCTACGCGTCAGAGATCGTTTGCGCTTTAGAGTACATCCACTCTCTTGGAATTGTGAGTAGAAG
i caeSp111.Scaffold630  I 15 C 0
s caePb3.Scfld02_0      2225457 112 +  4147112 --------------------------Atca------tttttgtc---gtt---------------------------------------ttta---cAGATCCTTCACCAATTCAATGGCTCGTTTCTATGCTTCAGAGATCGTGTGTGCTTTGGAGTACATTCATTCTCTTGGAATTGTAAGTAGAGG
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18142  113332 186 -   343467 AGTTAGTTAGTGCTAGGAATTACACAATTACATgaatatttttccatttttagacaaagaagcaaacaaaaaacaaaaccacAAATACATTTT---TAGGGCATTTTCAAATTCGATGGCTCGTTTCTACGCCGCTGAAATCGTTTGTGCATTAGAGTACATCCACTCATTGGGAATTGtaagaaaata
i caeJap4.Scaffold18142 C 0 I 31

a score=414.000000
s ce10.chrX             3891557 37 + 17718866 TTCTCCACGTGAACT-----TTT--CTT-CATTGTTTTTGTTTAC
s cb4.chrX              9034976 39 + 21540570 -----AACAAGAACttttgcctgaaaat-gttgtttttgttcTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947132 40 -  4500979 AACATAACaagaact-----ctgaaaataaatgtttattgttttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5937783 39 + 20921866 GACAAAGCATGAACT-----TTCGGAGA-AAtaaagttgtttttc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2225569 35 +  4147112 AACAAAACATGGACT-----TTCGAAag-gat----tttgttttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  113518 31 -   343467 I

a score=76919.000000
s ce10.chrX             3891594 159 + 17718866 AGGTGTATCGAGATTTAAAGCCAGAGAATCTCATGCTCAGCAAAGAAGGGCATATCAAAATGGCTGATTTCGGATTTGCAAAAGAACTTAGAGATCGGTATGTGAG------GTTTTTTTTCCGAAAATCGTTGGCGGATTTTTGATTCCTAATTTTTCTTTATG-
s cb4.chrX              9035015 114 + 21540570 AGGTCTACCGAGACTTAAAACCAGAAAACTTGATGCTCAGCAAAGAAGGCCACATCAAAATGGCTGATTTCGGATTTGCGAAAGAACTCCGCGACAGGTTAGT---------GTTTGGTGact-------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947172 141 -  4500979 aggtcTATCGAGActtaaaaccagaaaatttgaTGCTTAGCAAAGAAGGCCACATCAAGATGGCTGATTTTGGATTTGCTAAGGAACTCCGCGATAGGTTGGTTATTTA---ATTTGGTGTCTGCTCACC---------TGctgctttttgaa-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5937822 159 + 20921866 aggtCTACCGAGATTTAAAGCCAGAGAACTTGATGCTCAGCAAAGAAGGCCATATTAAGATGGCCGATTTTGGATTTGCCAAAGAACTTCGCGATAGGTAGGCGGCTTTCTGATTTTCCATTGTTG-ATC----AACAGTCCTGGATACCTAATTATAGTGTTT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2225604 153 +  4147112 aggtctACCGAGACTTAAAGCCAGAGAACTTGATGCTCAGCAAAGAAGGCCATATTAAAATGGCTGATTTCGGATTTGCCAAAGAGCTCACTGACAGGTTTGTGATCTTTT-ATTTCATATCTTTATATC----AAAAATAGTAA------AACATTAGTGTAT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  113549 145 -   343467 AGGTATATCGTGACTTGAAGCCAGAAAATTTAATGTTAAGCAAAGAGGGTCACATCAAGATGGCCGATTTTGGGTTTGCAAAGGAGCTGCGTGACAGGTGAGCcatt-----gtttcttttctt---------------tttttgttttgttattttttttcct-g
i caeJap4.Scaffold18142 I 31 I 937

a score=108555.000000
s ce10.chrX             3891753 570 + 17718866  
s cb4.chrX              9035129 513 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947313 549 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5937981 561 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2225757 547 +  4147112  
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18142  113694 937 -   343467 I

a score=-10686.000000
s ce10.chrX             3892323 89 + 17718866 --------TCACTTTGTTGATGTTTAGAAAAATAAAATAGAAGGAAACTATGAACCAATCTTTGAATTATTATTATTTAGTTAAATTTGTTCT----------GATT-
s cb4.chrX              9035642 42 + 21540570 TTTCAGGGTTA--------AGG-TCAGGGGTCGGAAAT-----------------------------------------------CCGGTTCC----------AAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947862 71 -  4500979 TTCCGGGGTCAACAGGTCCATG-TCATGAGAACAAAAT----------------------------------ACATCT--TTCAACTGGCTCCAAGTGCTCGGAAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5938542 53 + 20921866 -------GTCAAATGGTCCTTC-TCATAAGAACAAAAA----------------------------------TCACTT--ATCTGTTAGCAAT----------GAAG-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2226304 30 +  4147112 I
e caeJap4.Scaffold18142  113694 937 -   343467 I

a score=-6119.000000
s ce10.chrX             3892412 25 + 17718866 AATCTTGTTTTGATTTTCAAT----------TCGG
s cb4.chrX              9035684  6 + 21540570 -----------------AAAC----------tc--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947933  8 -  4500979 -----------------TAAT----------ttat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5938595  6 + 20921866 -----------------CAAT----------TC--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2226334 21 +  4147112 ------------AACATTAATGGGATCTTTATC--
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18142  113694 937 -   343467 I

a score=502142.000000
s ce10.chrX             3892437 869 + 17718866  
s cb4.chrX              9035690 909 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   947941 900 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  5938601 876 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2226355 901 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  114631 816 -   343467  
i caeJap4.Scaffold18142 I 937 C 0

a score=3536.000000
s ce10.chrX             3893306 9 + 17718866 ACAAGGAAA
s cb4.chrX              9036599 9 + 21540570 ACAAAgcaa
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold630  5939477 9 + 20921866 ataaataaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227256 8 +  4147112 -caagtgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  115447 8 -   343467 -caaaaaaa
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=-626.000000
s ce10.chrX             3893315 7 + 17718866 GGAAGCC
s caeSp111.Scaffold630  5939486 7 + 20921866 aaaagta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227264 7 +  4147112 aaaattt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  115455 3 -   343467 -aaa---
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9036608 12 + 21540570 I
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=0.000000
s ce10.chrX             3893322 2 + 17718866 AG
e caePb3.Scfld02_0      2227271 2 +  4147112 I
e caeJap4.Scaffold18142  115458 0 -   343467 C
e cb4.chrX              9036608 12 + 21540570 I
e caeSp111.Scaffold630  5939493 0 + 20921866 C
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=-2188.000000
s ce10.chrX             3893324 470 + 17718866 TTTACCTACAGGGTTTGAAACGAG---GGAATTTTTCCGGTATCTCAAATTTTGCAAAAATCATCACAATAATTTACAAGACCTTCTAGAATTTTGGTTCAGAATTTTCAGATAAAAT-----CAATTTCAAAATAGTGTCAGAAAGCTTGCAAACACTTCTGAAACCTGGTTAAAAATTATTTCATATATCTAAAAGGTTTTCAGTTTGTATTTTTTTTTGAACATTTTTCCAAACCTATGAACTTTGATATGAACAATATAAACTGGAAAGTTAAAGAACAATATTTTAGTAACAGAGTAACGGTGTTTGAAACT---TTCGAACATATTTACACTAGAT-------------TCACATTGAAAATTTTTAGATAAAACGATTTTTAAACGGTTTCGAAACGTTTGCAAACAAATTTGGAAC---AAAAATCAAAATTGGAATACTTTTAGGCATTTTTCAAAAAGCTTCC-----AATCTATACTTTAGCAAATCTACG
s caeJap4.Scaffold18142  115458 357 -   343467 --------------ttgaaatgagcCCCCAATTCTTACCAT-TTTCAAATATTG-------------------------AACCTTC-----TTTTCGCTC-----TATC--ATAAAATTCGTACAATGTGAAAAT--------GAAACTACATAgcagttcaaaa--------aaaaat---------------aaatattt--------tattttactttGTACATTAATACATACATATAA----TAACGGGgatgctacggaatagaactgcacggaatag---------aaccggctaaaa-----tgaaactgtactaaaaagcaactgcacgaaatagaattcagggcctcacaatgtaca-------acgaaataatt---------cttcgagttgtt--cgagcggttctgggtcggtacagctcaa-----------tttgaggcggttct-------attccgcgcaattctattccatagcagttctact
i caeJap4.Scaffold18142 C 0 I 26
e caePb3.Scfld02_0      2227271   2 +  4147112 I
e cb4.chrX              9036608  12 + 21540570 I
e caeSp111.Scaffold630  5939493   0 + 20921866 C
e caeRem4.Crem_Contig0   948841  38 -  4500979 I

a score=0.000000
s ce10.chrX             3893794 64 + 17718866 GGCCTAGGATCTAATGAAAATATGAACTGAGAAAATTAAAGAGCAAAATATCAGGATGTCAAAG
e caePb3.Scfld02_0      2227271  2 +  4147112 I
e caeJap4.Scaffold18142  115815 26 -   343467 I
e cb4.chrX              9036608 12 + 21540570 I
e caeSp111.Scaffold630  5939493  0 + 20921866 C
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=-1420.000000
s ce10.chrX             3893858 112 + 17718866 TTCGCTTCATAATTTTGTGATAACTAAGTCGAACCATACAATTTTTGAAATAATATTTTCTCGTTTTATTATATTGGATGTATTGTCTTCCTTTCCTTGTTATCCAGATCAC
s caeJap4.Scaffold18142  115841  47 -   343467 ccccccccATAAT------------------AACTGTAC----------ACAGTACATACTAATTTAA-------------------------------------ATAttac
i caeJap4.Scaffold18142 I 26 C 0
e caePb3.Scfld02_0      2227271   2 +  4147112 I
e cb4.chrX              9036608  12 + 21540570 I
e caeSp111.Scaffold630  5939493   0 + 20921866 C
e caeRem4.Crem_Contig0   948841  38 -  4500979 I

a score=-283.000000
s ce10.chrX             3893970 3 + 17718866 -AAT
s cb4.chrX              9036620 3 + 21540570 -aAT
i cb4.chrX              I 12 I 1
s caeJap4.Scaffold18142  115888 3 -   343467 aaa-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2227271 2 +  4147112 I
e caeSp111.Scaffold630  5939493 0 + 20921866 C
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=546.000000
s ce10.chrX             3893973 1 + 17718866 A
s caeSp111.Scaffold630  5939493 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227273 1 +  4147112 a
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  115891 1 -   343467 a
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9036623 1 + 21540570 I
e caeRem4.Crem_Contig0   948841 38 -  4500979 I

a score=238547.000000
s ce10.chrX             3893974 439 + 17718866 -----ATCAATTATCTTCGAAATTGGTTTCCTGGGCGGACTCCATAACTTCTACCACCACACTTCCATCGTTTTTCAGAATTTCAGCTTTTCCTTGTTCTGGGTAATACACTATTGAACCTGAAATGATCTCAT------TTAAGTTGAAGA------TTAAC------CGAATTCTCA----------ACTATTAATAGGAAGCGTATGCATTGAAATGGTGGTTGATTTTATA---GCAGGTGAACCTC---CTCCCATATTCCTCAATTCTGACATATAAACCGAAGTTTCATTACCAGAGTCCTGAAATTATAGAAAAAAA--CAGGTGTCTTCTTGAAATT---C-GATTAAA-----GTTAACCTTTGAATATTTTTCGTCGTCGTCACTAAAGCTCATTGATGTCATTTTATTCTTATATCGGACAGCCATGGTTTTGTACTTCATACAACATGTCATTTCACTGCATCTCACGTATCT-----------GAA-----
s cb4.chrX              9036624 430 + 21540570 --------ATTTATTGTCTTCTTCAACA------GCAGACTCCATCACTTCTACCACTATACTTCCATCGTTCTTGAGAATTTCAGCCTTTCCTTGCTCTGGGTAGTACACGATTGAGCctgaaa---------------agattttgaaatt----cctgaattttattggtttttgc--------TCACTATTATTGGGTAATGTTCTCATAGATATCGTAGTAGATTTGATCGCCGCAGGTGCA---C---CTCCCATATTACGTAACTCTGACATATAAACCGATGTttcatttccagaattctaaaaac------aGGTG--TAATTA-TTTGCGATAAGC---AGGTTTAGGCTCATTCTAACCTTGTTCTCATGCTCGTCATCATCACTGAAACTCATTGATGTCATTCGGTTTCTATATCGGACCGCCATCGTTTTGTATTTCATGCAGCATGTCATTTCACTACATCTCACGTAGCT-----------GGA-----
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0   948879 440 -  4500979 -----ATTATTTATCGTCGAGCTCGGTGGCTTGTGCGGATTCCATAACTTCGACAACTACActtccatcatttttcagaatttcagcttttccttGCTCTGGGTAGTATACAATGGAACCTGAAACTTATTAATCGAACTAGATACCAAAGTC----TTTAAA-----------ACTGC--------TCACTATTGTTTGGTAACGTTCTCATGGAGATAGTCGTTGATTTAATCGCCGCAGGTGCACCTC---CTCCCATATTTCTCAGCTCTGACAAGTATACTGATGTTTCATTTCCAGtgctctgaaaat------agaaa--caggTG-TTTCTGGTGAAG---A-ATTTAGA-----TCAAACTTTGGGTTCATTCTCGTCATCGTCACTGAAACTCATTGATGTCATTCTATTTCTATATCTGACTGCCATAGTTTTGTATTTCATACAACATGTCATTTCACTGCATCTCAcgtatct-----------gaa-----
i caeRem4.Crem_Contig0  I 38 I 36
s caeSp111.Scaffold630  5939494 437 + 20921866 -----attaaACATCTTCCATTTCGGCTTCCTGGGCGGATTCCATTACTTCCACAACAACActtccatcatttttcagaatttccgcTTTTCCTTGTTCAGGATAATACACAATTGcacctgaaaataatttgg------aCACCGTCAAGTa----ctcaaa------gaaaaactga---------tacTGTTATTTGGTAGCGTTCTCATTGATATCGAAGTCGATTGAATGGCTGCCGGTGCG---CCGTCTCCCATTTTCCGGAGCTCTGACATATACACTGATGTTTCGTTTCCATGCCGCTAAAATT------AACAG--CAGGTGATTTATTCAAACA---A-ATTCC-------ACTAACTTTTggttcattttcatcatcgTCACTGAAACTCATTGATGTCATTCTATTTCTATATCGGACTGCCATAGTCTTATATTTCATGCAGCAGGTCATTTCACTGCATCTTACATAACT-----------GAA-----
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2227274 444 +  4147112 -----gttATTCATCATCCATTTCCGTTGCTTGAGATGATTCCATAACTTCTACAACTACgcttccatcatttttcaaaatttcagcttttccttGTTCCGGGTAATACACGATTGAgcctgaaaa----------------actttcaagt------tcaaa------caacttttgagTTGAAAGTTACTGTTATTAGGTAAAGTTCTCATCGATATTGTTGTAGATTTGATTGCTGCAGGTGCA---C---CTCCCATGTTTCTAAGCTCTGACATGTACACTGATGTTTCGTTTCCACcgctctgaaaat------agaaa--caggtg-tttataaaaaaataga-gttaA-------TCTgacttttgtttcattctcaTCGTCGTCACTGAAACTCATTGATGTCATTCGATTTCTATATCTGACAGCCATCGTTTTATATTTCATGCAGCAGGTCATTTCACTGCATCTCACATAACTGAATATCAAGGGAA-----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142  115892 434 -   343467 agtaaaaaggCTAATTTAAGCATAAAGTTTTTAGCCAGACTCCATGACTTCCACCACTACAGTtccatcctttttcaaaatttccgctTTTCCTTGCTCAGGATAGTACACAATGGAACCTGGGA---------------AAAATTTGAGCTTATTGCtttaa------aaaccaataa-----aaattaCTGTTGTCTGGTAGAGATTTCACTGCAACTTGTGACGAATTTATTGGTGTtgat------t---ttcccattttcctcAACTCCGCCATATAGACCGATGTTTCATTTCCAGTAgtct-aaatt------aaaaattcagatt-tgcaatgtaata---a-cttcaaa-------------ctggGTCATTTTCATCATCATCGCTGAAGGACATTGACGTCATTCTATCCCTATATCGAACTGCCATAGTTTTGTATTTCATGCAGCAAGTCATATCGCTACACCGAACATACCT-----------gagcaaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-1258.000000
s ce10.chrX             3894413  6 + 17718866 TTCT-----GA
s cb4.chrX              9037055 11 + 21540570 TCAAAGAGGGG
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  5939932  6 + 20921866 TCTT-----CA
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2227719  6 +  4147112 TTta-----ga
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  116326  6 -   343467 tttt-----ga
i caeJap4.Scaffold18142 C 0 I 30
e caeRem4.Crem_Contig0   949319 36 -  4500979 I

a score=-1878.000000
s ce10.chrX             3894419 17 + 17718866 TT----AGGATTCCGGGAACA
s cb4.chrX              9037066 21 + 21540570 TTTGGCAAAAATATGGAGGGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5939938 20 + 20921866 TGTTAAAAAATCC-GGAGACG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227725 19 +  4147112 tttcagaaagttcaagAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  116332 30 -   343467 I
e caeRem4.Crem_Contig0   949319 36 -  4500979 I

a score=-2955.000000
s ce10.chrX             3894436 12 + 17718866 ---------AAATGCACTCGT
s cb4.chrX              9037087  3 + 21540570 ---------AAA---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5939958  8 + 20921866 ---------CAAAATTC----
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  116362 12 -   343467 AATTTTTCTAAA---------
i caeJap4.Scaffold18142 I 30 C 0
e caePb3.Scfld02_0      2227744  0 +  4147112 C
e caeRem4.Crem_Contig0   949319 36 -  4500979 I

a score=92806.000000
s ce10.chrX             3894448 101 + 17718866 CTTACCCAGCAGGGCAGTGACAAACATTATCGAAAATACACGGAACCATGAGGGGTGGAGCTGTTATGCATTCTTCGGTACAGTCTGGCATGCACACTGAA
s cb4.chrX              9037090 101 + 21540570 ATTACCCAGCTGGACAGTGGCAGATGTTATCAAAAATACAAGGAACCATGAGAGGTGGAGCAGTGACACATTCTTCTGTGCAATCCGGCATACACACTACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   949355 101 -  4500979 CTTACCCCGCAGGGCAATGACAAACGTTATCAAAGATACAGGGGACCATAAGTGGAGGGGCGGTGACACATTCTTCTGTGCAGTCCGGCATACAAACTGAA
i caeRem4.Crem_Contig0  I 36 I 17
s caeSp111.Scaffold630  5939966 101 + 20921866 CTTACCCTGCTGGACAGTGACAAACGTTATCGAAGATACATGGAACCATAAGAGGAGGAGCCGTAACACATTCTTCTGTACAGTCTGGCATgcaaactgaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227744 101 +  4147112 CTCACCCCGCAGGACAGTGACAAACATTATCGAAAATACAAGGGACCATCAATGGAGGAGCAGTAACACATTCCTCTGTGCACTCCGGCATACATactgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  116374  99 -   343467 CCTACCCTGCCGGACAATGACAAACGTGGTCAAACACACAAGGTACCATTAGCGGGGGAGCTGATACACACTCATCAGTGCAGTCCGGCATGCAAactg--
i caeJap4.Scaffold18142 C 0 C 0

a score=-17557.000000
s ce10.chrX             3894549 63 + 17718866 ACTCGGATTTTAAAAGAAAATCGCATAAAACTAAAATGAAATCTTGTTT---TAGGAGTCTTGAAA
s cb4.chrX              9037191 45 + 21540570 --AAGGATTTCAGACGATCAtc---caaaatgagtat--aatctttttgaaa--------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5940067  1 + 20921866 ------------------------------------------------g-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2227845  1 +  4147112 ------------------------------------------------t-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  116473 14 -   343467 -------------------------taaaacaaaaaaaa---------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   949456 17 -  4500979 I

a score=-11829.000000
s ce10.chrX             3894612 104 + 17718866 ACACGACATCGTGTGTGGATTTGCGGGTAAAAATCATTAATTTACGACGACCTTGTGTAGAAATACGGGAGTAATATGTAAATTTACAAGAAACAAA-----AAAAGAC
s caeSp111.Scaffold630  5940068  32 + 20921866 ---------------------------------------------------------------------aaaaatgttttcgatttccagaaataaa-----aaag---
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2227846  32 +  4147112 --------------------------------------------------------------------------tttgttcaaattaaCTAAGCAAATtgggaaaa---
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142  116487  26 -   343467 -----------------------------------------------------------------------acttgaggTGACTCTAACTTGCTAGA------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9037236   0 + 21540570 C
e caeRem4.Crem_Contig0   949456  17 -  4500979 I

a score=0.000000
s ce10.chrX             3894716 26 + 17718866 ACACTACATACTTCCTTAATTTCTTC
e caePb3.Scfld02_0      2227878  5 +  4147112 I
e caeJap4.Scaffold18142  116513  0 -   343467 C
e cb4.chrX              9037236  0 + 21540570 C
e caeSp111.Scaffold630  5940100  4 + 20921866 I
e caeRem4.Crem_Contig0   949456 17 -  4500979 I

a score=162151.000000
s ce10.chrX             3894742 300 + 17718866 AATTTTGTTATTTCCAAATAATACTTACCCGCTTTACAAACTTTCGGTTTAGCATTGTGTTCAGCAATGGAATATGCATCTAAACATTGGGGTGTACAGTATGGCATACATTCATCTCTGCATTCAATTCCCTTCTTTGGAGAGAATCTGATACTCTGCA-----AAAAAAGTATTGGTACGCTAGTTCAAATTTTTTTTTCATTGTCTC-----------ACCTTTCTTGGC---TCTTCATTGACAGGTTGCCCCATGACGTCAATTGCAGTTAGGGAATTCATAAAGGAAGCAACGATTTGGTTATATCTCTGTAA
s cb4.chrX              9037236 276 + 21540570 ---------aatttt--------ctcaccAGCTTTGCAAACTTTACGCTTTGAATTCAGCTCAGCCGCTGAATAAGCGTCCAAGCACTGCGGAGTACAATATGGCATACACTCATCGCGACATTCGACATTCTTTTTAGGAGAAAATctaacattctaga-----aaattaacaa-----tgaaataaaaaactc------aAGTAGTGCACTT-------ACTTTTCTGGGC---TCCTCATTAACAGGCTGACCCATCACATCAATTGCTGTTAAAGAGTTCATAAAGGAAGCAACAATTTGGTTGTATCTCTGAAA
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   949473 286 -  4500979 ----CTGGTAATTCC--AGAAAGCGTACCTGCTTTACAGACTTTGGGTTTTAAATTCAATTCAGCTGTGGAATAAGCATCCAAACACTGTGGAGTGCAATATGGCATGCATTCATCACGACACtcaattgacttttttggcgaaaaccgaatgttctgaa-----aaaatgattgctTTTCATAGCTAGAAACT------------ATCTAATA-------ACTTTTCTCGGT---TCTTCATTAACAGGTTGTCCCATTACATCTATTGCTGTCAAGGAATTCATGAACGAGGCTACAATTTGATTGTatctctggaa
i caeRem4.Crem_Contig0  I 17 I 1
s caeSp111.Scaffold630  5940104 269 + 20921866 -------------------------taccTGCTTTGCAGACTTTGGGTTTCAGATTTTGTTCCGCTGCGGAATAGGCTTCGAGACACTGTGGTGTACAATATGGCATGCACTCATCTCGACATTCGACTGTTTTCTTAGGAGAAAATCTGACATTctaaactttcaaaaatacag------------aaaaatgagtagaTAATAATTTCAGCT-------ACCTTTCTAGGC---TCTTC---GACAGGTTGACCCATCACATCGATCGCCGTCAATGAGTTCATAAAAGAAGCGACAATTTGATTGTATCTCTGAAA
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2227883 276 +  4147112 ------------------aaaaacatacCTGCTTTACAAACTTTAGGTTTCAAGTTCTGCTCTGCTGCAGAATAAGCATCCAAACACTGTGGTGTACAGTATGGCATGCATTCATCACGACATTCGATAgtcttttttggagagaatctaatgttctgga-----agaaa-----------------agaagttttttgggAAGTGTTCCAGTTTTCACAAACCTTTCTTGGT---TCTTCGCTGACCGGCTGACCCATTACATCAATAGCAGTCAAGGAATTCATAAAAGAAGCAACGATCTGGTTgtatcgctgaaa
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18142  116513 284 -   343467 -------------------ATTGCCTACCAGCTTTACAAATTTTTGGTTGAGAATTTCGATCGGCTATTGAATAAGCGTCCAGACATTGTGGTGTACAGTATGGCATACATTCATCTCTACACTCGATCGTTTTACTTGGCGAAAAACGAATGTTCTGGAAAGCCGAAAATACGT------------AAATACATAGCAGCAACGTGTGAAATTTAA----ACCTTCCTATTTCCACCCTCGTTAACTGGCTGTCCCATCACATCGATAGCAGTCAAAGAGTTCATGAATGACGCTACTATTTGATTGtatctctgaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=273.000000
s ce10.chrX             3895042 1 + 17718866 A
s caeRem4.Crem_Contig0   949760 1 -  4500979 a
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold18142  116797 1 -   343467 a
i caeJap4.Scaffold18142 C 0 I 30
e caePb3.Scfld02_0      2228159 0 +  4147112 C
e cb4.chrX              9037512 6 + 21540570 I
e caeSp111.Scaffold630  5940373 0 + 20921866 C

a score=-282.000000
s ce10.chrX             3895043 8 + 17718866 TATTAATA
s caeRem4.Crem_Contig0   949761 8 -  4500979 aattaata
i caeRem4.Crem_Contig0  C 0 I 34
s caePb3.Scfld02_0      2228159 2 +  4147112 -----at-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  116798 30 -   343467 I
e cb4.chrX              9037512 6 + 21540570 I
e caeSp111.Scaffold630  5940373 0 + 20921866 C

a score=-4879.000000
s ce10.chrX             3895051 86 + 17718866 CTTAATGTTTATAGATGTCACTCAGTATATGGTTTTTTGAATGTTGTGTAACCCTGTAGACACAAGATGTTTTATATTTAGTTTGA
s caeSp111.Scaffold630  5940373 15 + 20921866 -------------------------------------TGAG-------------------------ATgttgt---------ttga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228161 62 +  4147112 -tgaatg--agtagATTGAATTCCAGGTA----TTcctgagttttg-----------------aaaatgttacaCAGAAACATTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  116798 30 -   343467 I
e cb4.chrX              9037512  6 + 21540570 I
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=-1055.000000
s ce10.chrX             3895137 121 + 17718866 TCTATGCGGCCGGTCTGCCGGCATAGTGTTACCT-ACTTTGGACCCGCTTGCTCTTTTGTTATCCCACCTCCCTGTCTAGGAGATGATTGTAAAATAAGTTATGAGGGCACAACAGTAAATG
s caePb3.Scfld02_0      2228223  68 +  4147112 -----------------AAGGTCACGTGTTATTTTGCATGGGAATCAATTGTTATTCTGT-GTATCAGTTCCAT------------------------------------CAAAAGTAACtg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  116798  30 -   343467 I
e cb4.chrX              9037512   6 + 21540570 I
e caeSp111.Scaffold630  5940388   0 + 20921866 C
e caeRem4.Crem_Contig0   949769  34 -  4500979 I

a score=-3194.000000
s ce10.chrX             3895258 75 + 17718866 AAAATTATCTAGCATTTTTTGTTGTTTGTTTAAAATTGACTTTCATACAGTTTGAAGTTCACTCCCAGAGCAATA
s caeSp111.Scaffold630  5940388 45 + 20921866 aaaactattca------------cTCTACTAAAAA-----CTTAATGAATTTtataattcta-------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228291 56 +  4147112 -gaatttctaa------------ttttcgtATCAATC--CTCTAGTAAATCTTCAGATTTGGTC----AGTAATA
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18142  116798 30 -   343467 I
e cb4.chrX              9037512  6 + 21540570 I
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=-486.000000
s ce10.chrX             3895333 19 + 17718866 AAAATAAATCTATGACCGT
s caeSp111.Scaffold630  5940433  4 + 20921866 aaaa---------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2228347 16 +  4147112 I
e caeJap4.Scaffold18142  116798 30 -   343467 I
e cb4.chrX              9037512  6 + 21540570 I
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=-4856.000000
s ce10.chrX             3895352 79 + 17718866 GAATGAAAAAGATTATCTTTCAAAAAATCTCTTGCCGGTGAATTTAGCGTCGTTGAAAATTTTTTGAATGCCTTAACTG
s caeSp111.Scaffold630  5940437 29 + 20921866 ---------------------------acgTTTGG---------TAACCTCACT--------------TGCTTATATtt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228363 33 +  4147112 gaatcaagaaaa---------aaaaatccttttgg-----------aCCT--------------------------TTC
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18142  116798 30 -   343467 I
e cb4.chrX              9037512  6 + 21540570 I
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=-2161.000000
s ce10.chrX             3895431 23 + 17718866 -AAAAAATAAATCAAAGTAATATC
s cb4.chrX              9037518 23 + 21540570 agaaaaatagtcaataGT-TTTTC
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold630  5940466 18 + 20921866 -taacaaaattttaaaa-----ac
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228396 18 +  4147112 -AAATAATGATCGAACA-----AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  116798 30 -   343467 I
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=437.000000
s ce10.chrX             3895454 3 + 17718866 ACT
s cb4.chrX              9037541 3 + 21540570 ACG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5940484 3 + 20921866 acg
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2228414 3 +  4147112 AGA
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142  116828 3 -   343467 ACT
i caeJap4.Scaffold18142 I 30 C 0
e caeRem4.Crem_Contig0   949769 34 -  4500979 I

a score=129253.000000
s ce10.chrX             3895457 257 + 17718866 TACCTGAAGACATCTTGGAGTACACTGTGGCATACATGCGTTTGCACATTGTTTCTTTGGAGTCAACAATTTTGGTGCAGCGGTAGTGGTGCGGACAGCCGGGTTACGGTTGACGAACGGATATCTGTTCATGCTCATTCCA---CGGGATGACCCTGTTGATCCCGGGTTGCGTGGACTTCCAAA---GGCCGGATTTGGATACATTTTTCGGGCTGCTTGGTTTGTTCGTGCAAACTGATGTTGCCTTTCTGTTGGGCAGC
s cb4.chrX              9037544 248 + 21540570 AACCTGTAAGCATCTTGGACTGCATTGTGGCATGCAAGCGTTAGCACAAGATTTCAAAAGAGT------------AGCTACCGTTGTGGTTTTCACTGCCGGATTACGGTTTACATATGGATATCGGCTCATACTCATTGTACGGCGAGAGGATCCAgtgttttgaatgtttctaGAGTTTCCGAA---TACAGGATTTGGATAAACTCGGCGTGGCGCTTGATTCGTTCGAGCGATGTGTTGATGTCTTTCTGTTGGGCaac
i cb4.chrX              C 0 I 3663
s caeRem4.Crem_Contig0   949803 245 -  4500979 TACCTGAAGACAACGTGGCGTACACTGTGGCATACATGCATTTGCACACTGTTTCAGAAGAGA------------TGCAGCTGTTGTTGTGCGGACTGCTGGATTACGGTTCACATATGGGTATCTGTTCAGATTCACCCCTCCCCTAGAAGATCCGGTCCTCTGCTGATTTCTAGCATTTCCAAA---GACTGGATTAGGGTATACACGACGAGGTGCTTGATTGGTTCTTGACATATGT---TGTCTTTCCGTGGGACAAC
i caeRem4.Crem_Contig0  I 34 I 3
s caeSp111.Scaffold630  5940491 245 + 20921866 TACCTGGAGACACCGAGAACTGCATTGAGGCATACAGGCATTAGCacattgtttcaaaagagg------------AGCAGGTGTCGTCGTTCGAACTGCAGGGTTACGGTTCACATATGGATACCTACTCATAGTCATTGCT---CGAGAAGATCCTGTTACTTGCTGGTTCCTATTGTTCCCGAA---GTTTGGATTCGGATATATTCTTCGAGATGCTTTGTTCGTTCTAGCCATATGTTGTTGTCTTTCAGTAGGACAAC
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2228421 242 +  4147112 TACCTGCAAACAACGTGGGCTACACTGCGGCATACAAGCATTTGCACACTGTTTCAGAAGGGT------------TGCAGCAGTTGTCGTTCGTACTGCCGGATTACGGTTCACATAAGGATATCTGCTCATACTCATTGCT---CTCGACGATCCTGTTCCTTGTTGGTTTCTATTGCCACCGAA---ATTCGGATTCGGATACATTCGACGGGATGCTTGATTTGTTCTCGCAATATGTTGTCG---TTCAGTGGGGCAAC
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142  116831 236 -   343467 CACCTGAAGACATCTTGAACTACACCGTGGCATACATGCATTTGCACACTGTTCAATAACTTG------------TGGGGATGTAGTTGTACGA---GCTGGACTTCTGTTCAAATACGTGTATCCTTTTCTACTGCCCTTT------GAAGATCCCGTcccccccTGACTTCGCCGACTGGCAAATGCAGCTGGATTGGGATAAACTCGATGCGAAGACTGCATATTTCTTGCTAATTGACG------TTCAGAAGGACAGC
i caeJap4.Scaffold18142 C 0 C 0

a score=-1580.000000
s ce10.chrX             3895714 10 + 17718866 TTAAAA----ATCA
s cb4.chrX              9041455 10 + 21540570 ttaaaa----ataa
i cb4.chrX              I 3663 C 0
s caeRem4.Crem_Contig0   950051 10 -  4500979 ATGAAA----ATCA
i caeRem4.Crem_Contig0  I 3 I 32
s caeSp111.Scaffold630  5940736 10 + 20921866 -TGAAAGTTTA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228663  6 +  4147112 -TTAAA----A---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  117067  5 -   343467 -TGAAA--------
i caeJap4.Scaffold18142 C 0 C 0

a score=-7165.000000
s ce10.chrX             3895724 37 + 17718866 GACTTGAAATTTTTCAAATAATTTCTT--TCACAAACGG---
s cb4.chrX              9041465 29 + 21540570 ----caaGCATTTTTGAAC----CAAT--CTTCATATTT---
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold630  5940746 30 + 20921866 -----GATGATATTGTAATgctaaaat--ttgaaaat-----
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2228669 32 +  4147112 -----GAACATTTTGTGAGAACAAGAT--TTTCAAACAC---
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18142  117072 42 -   343467 GTTTTGCAAACGTTCGAATAGCGAAATAACTGAAAGCTCATT
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   950061 32 -  4500979 I

a score=124591.000000
s ce10.chrX             3895761 129 + 17718866 ACCATCTAAATGCACACCAGCCTTCGGGACCACAACCCATCAGATCACTGAAGTATTCACCAATTGCTCGCATCCTACTATCCGCATAATGCCCGTAATCATTCAGAAAA---TTCGTTTCATTTTGCTAAA------
s cb4.chrX              9041506 129 + 21540570 ACCACCTGAAAGCGCACCATCCTTCAGCTCCACATCCCATTAAATCACTGAAATATTCTCCAATTGCTCTCATTCGACTATCAGCATAATGTCCATAATCATTTAAGAAA---TTGGTttcattttgctgaa------
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   950093 129 -  4500979 ACCATCTGAATGCACACCATCCTTCAGCTCCGCAACCCATCAAATCACTAAAATATTCACCAATAGCTCTCATCCGACTATCAGCATAGTGGCCATAATCATTCAGAAAG---TTTGTTtcgttttgctgaa------
i caeRem4.Crem_Contig0  I 32 I 9
s caeSp111.Scaffold630  5940777 131 + 20921866 accaTCTGAAAGCACACCATCCTTCTGCACCACATCCCATAAGATCACTAAAGTATTCACCGATTGCCCTCATTCGACTATCAGCGTAATGTCCATAATCATTAAGAAAATTGTTCGTTTCATTTTGCTAG-------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2228709 129 +  4147112 ACCATCTAAAAGCACACCATCCTTCTGACCCACATCCCATCAGATCACTGAAATATTCACCAATAGCTCTCATTCGACTATCCGCATAATGGCCATAGTCATTAAGGAAA---TTCGTTTCATTTTGCTAAA------
i caePb3.Scfld02_0      I 8 I 1
s caeJap4.Scaffold18142  117114 135 -   343467 ACCAACGGAAAGCACACCATCCTTCAGGTCCACAACCCATTAGGTCACTAAAATACTCTCCAATCGCTCGCATCCTGTTATCCGCATAATGGCCATAGTCGTTTAAGAAA---CCTGTTTcattttgctaaaaaaaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-4149.000000
s ce10.chrX             3895890 18 + 17718866 CGAATTGTTTTTTTTTTG---------------
s cb4.chrX              9041635 16 + 21540570 --aatgaaaaaattttta---------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5940908 17 + 20921866 -AAATTGTTTTACTCTCG---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228839 18 +  4147112 TAAATTAGAAtacaatga---------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  117249 33 -   343467 agagatgtTCTTTACTTGTTATGCGTGCttgta
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   950222  9 -  4500979 I

a score=50108.000000
s ce10.chrX             3895908 280 + 17718866 -----AAAGTTAAAATTTATT-------CAAATATAA-AAACTTACAGAGCAAACT---AGAATAAAAAGAGTTGAAATT-----AAATTTAAAAACC-TGAA------AATCATCTGACCGTTTAGAAACACAAAATAAAGAAATGAGA---TCTATCGCGACGAGC-CGAAG--TGTCATTTTGGACATA--TTGTCACAAA-CGGATTCACCAACT---CAAACAATCGAATCGTGAGCCAACAATCA------------TC----------ATTAATTT-GCACATGCTTT---------TCA----ATTATTCATTCTCTCAAAAGTACGTACGATTTTCAAA----ATTAGAAA
s cb4.chrX              9041651 285 + 21540570 ------aa---aagaaataat-----aataaatcta--caacttacacaatgaacc---tgaaaaaataaatttggaaGTATCAAAAACAGTAAAATCATTAT------AATCATTTGATCCGGTAGAATCACAAAAtaaagaaatgagaaattctCGC-CGAAAAGAACCGGGGATGTCATTTTGGACACGTCTTGTCACACATTCGCTCCTCC-TCA----AACAAATCAGATCGTGAGCTAACAAATGA--GAT------TG----------ATTCACCT---AAACCGTTTCACTCA---TCAATTAATTATTCATCTCC------------TCGGTCCctagaatag--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   950231 302 -  4500979 ------AA---AATACATATTATTTCAATAACACAA--AAACTTACACATTCCACT---TTGTAAACTAGATTgggaatcaagaaaaatacaaaaattatcaa------aatcatCTGCTATGttagaaacacaaaataaagaaatgatA---TCTCCG-AGAAGAGAGCCAGG--TGTCATTTTGGACACG--TTGTCACAAAACGGATTCACT-TCA---CAAACAATTAGATCGTGAGCTAACAAAGGC--GGTAATCGCTC----------ATCCAATTTGCAAATTGTTTCACTTATCCTCAATCAATTATTCATACTC--AAAAGTAAGTACGATCCTTAGA------------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  5940925 278 + 20921866 ------------ACATTCGTC-----GCCAACTCAAAGAAACTCACACAATGAACT---tgcaaattaaaattttgtaaaataaaaaataagaaaataatgaa------aatcatctggtcagttagaaacaaagaataaagaaatgaaa---tctcCCGTGAGGAGCA--AGG--TGTCATTTTCGACATG--TTGTCACTAA-CGGATTCTCT-TCA---CAAACAATTGGATCGTGAGCTAACAATGAG--CAT------TTCTAGTCAATGattctttt----catctctttccaGTT--TCA-------AGTCATAAAA----------GTACGATCTTCAGA----A-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2228857 288 +  4147112 ------------aaa---act-----gaaaagtcgAA-CAACTCACacaatgaatt---tgaaatatcaaattttgaaaaaataaaaatatgaataattcGAA------AACCATCTGCTCTTTTGGAATcacaaaataaagaaatgatA---TCTCCGAAGAAGAGAGATAGG--TGTCATTTTCGACATG--TTGTCACATA-CGGATTCTCT-CCT---CAAACAAATCGATCGTGAGCTAACAATGAG--CGT------TT----------ATCAGTTT----CATTGTTTCACATAT--TCAACGCATCAATTATAAAA--ACTATGAGGTACGATCTTCAGA----ATTTAAAG
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold18142  117282 302 -   343467 aatattaaaaaaaaaaacatc-----aaaaaaacaaa-aaacttacTCCATTGGTTATATCACAAAGGAAGCCTCGaaaa---agaaacagaaaaaccaTGAACATCAGCATCATATTCTCGGATTGGAACACAAAATATAG--ATGAGATGGTCTTCG-AGGCCGGAGCCAGG--TGTCATTTTGGACATG--CTGTCACAAA-CGGATTCCCT-CCTACACAAACACCCGAATCGTGAGCTAACAAGCGAACCGT------TC----------ATCAATTA-GAAAATTGCTCCAAAg----ttgttgaaattttcgaagGA------------ATGATACTTGGA----ATTAA---
i caeJap4.Scaffold18142 C 0 C 0

a score=1956.000000
s ce10.chrX             3896188 29 + 17718866 AGCCAAAAAGAGTCGACGA---CTTCACTTCA
s cb4.chrX              9041936 27 + 21540570 ----aaaaaaagttagcaTTT-TTTCACTCCA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   950533 23 -  4500979 ----AATAAGAGTTAGC-----TTTCACTTCA
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  5941203 15 + 20921866 ------------ATGAC-----TTTCACTTTA
i caeSp111.Scaffold630  C 0 I 13
s caeJap4.Scaffold18142  117584 22 -   343467 ----------AGTTGGAATTCATTTCATTCCA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2229145 32 +  4147112 I

a score=27850.000000
s ce10.chrX             3896217 179 + 17718866 -------------TAAAAGTCAGAAGACCGTGAAGTTCAAACACGGAGAGCACACTTA---TTTCAAT--GGT--------GTATATGTATGTGT---------ATTTTGTTTT---CATTTGGATGATCAATTGGTGC-----ACTAGGAGGTAT--------------------TTTTATTTTCCAGGCCCAGTGAAATTTCTAACACT----TTATTCTTGGAAAATTCATATAAAACTTTCA
s cb4.chrX              9041975 148 + 21540570 -------------TCAAAGTCATAAGAGCGTGAAGTCCACGTGTGGAGAGTGCACTTGTCATCTCAAT--GGT-------GGTGTATGTCGGTTTTGTATGTTCAATTTATTCA---CATGTAGCTGATCAAATTATG------ACTAGGCGCAACGCAAG-------------CGCTTCAGTT------------------------------------------------------AAAGTTCA
i cb4.chrX              I 12 I 5
s caeRem4.Crem_Contig0   950568 134 -  4500979 -------------CTAAAGTCATAAGAGCGTGAAGTCCAAGTTTGGAGAGTGCACTTGTCGTCTCAAT--GGT--------GTGTATGTTCATCGTG-------AATTTATTTA---CATTTAGCTGATCAAATTATG------CCTGGGAGATCTAT------------------CTTCAATT------------------------------------------------------AAA-TTTA
i caeRem4.Crem_Contig0  I 12 I 5
s caeSp111.Scaffold630  5941231 133 + 20921866 -------------CAAAAGCCATAAGAGCGTAAAGTCCAAGTTTGGAGAGTGTACTTG---TCTTAAT--GGT--------GTGTATGTTCATCGTC-------AATTTATTTA---CATTTAGTTGATCAAATTATGA-----ACCGGGCGgtatat------------------tttcaatt------------------------------------------------------aactTTCA
i caeSp111.Scaffold630  I 13 C 0
s caePb3.Scfld02_0      2229177 169 +  4147112 -------------CAAAAGTCATAAAAGCGTGAAGTCCAAGTTTGGAGAGTGCACTTG---TCTCAATGGGGG--------GTGTATGTTCATCGTG-------AATTTATTTA---CATTTAGCTGATCAAATTATGA-----ACCCGGCGATATAC------------------TTTCAATT--------AAGTTTAATTCAATACACT----TCAAACGAGAAGA--------GAAACTTTCA
i caePb3.Scfld02_0      I 32 I 33
s caeJap4.Scaffold18142  117606 205 -   343467 TAAAAAAGAATAGACAAAGGCACATGAGCGTGAAGTGCACacttttcggtt----ttt---tttcatt--ggcaagttttaatttatattctccgtt-------tttctgttttgtctatttagtttcCAgtatcattacttttattagTTGCAACATTGGGTTAATAGAATGAGTTTTTATAT--------------AATTGTTTGCCCTATTCTCTTGCGTATAGA----------GCCTTTT-
i caeJap4.Scaffold18142 C 0 C 0

a score=-27227.000000
s ce10.chrX             3896396  75 + 17718866 -AAGACGGATTTCGCTTT----------ATA-TATGTATG---------------TAATGAAGTGGGCCGTAATAACCCA--AAATAACCGCGAGAAAAA-----------TTAG-
s cb4.chrX              9042128  26 + 21540570 --------Gacgaattta----------aaattctgcgaa---------------caat---------------------------------------------------------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   950707  50 -  4500979 ---------ATGTACTTC----------AAA---TGCAAA---------------TAATGGACTTTTC-----TCATTCA------------GGGAAATA-----------GTTG-
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  5941364  32 + 20921866 -----TTTCCGTTACTTT----------GAA---TGCGAG----------------AAGAAACTTT--------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  117811 113 -   343467 CGTGTCTGCGCGCATTTTTCTCAACGGCGCA---TGCAAAAGAGCATAGGGCATATAATAAATTTGTGAAAGTTAGTGCATTAAATGAACATGTAGAATATACTATCACGCTTTGT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2229346  33 +  4147112 I

a score=-97951.000000
s ce10.chrX             3896471 225 + 17718866 AAATTTTTTTTTGGATA---------------ATTGAAACAAAAATCAATAAAT---------------TTTTTTACAGTT----TAAATTTTTTTAGAAAGTTAA-AAAAAATTGAACAAAA-------------TTAGAA------------TTCTATAAA--TTGATTAACTGTTAAAGTTATTAGCTAAA---TGTTTCAAATTGAGCCAAAA-----TTTTAAATTCTT-----------------------------------GAGT--GGAATTTTGTAAAAAAGTGTGtaaaatttaaaaatttacaaattttttaGGTAGGGA
s cb4.chrX              9042154 120 + 21540570 -----atttttgtagtc-----------------------------------------------------ttttCATTGTTTCTTTGGTCTCTCTC---------------CATTCGGCAAAA-------------TAAGAA------------TTCGGGAAT-------------TCGGA--------------------------TAATACAAAATAATTTCTTAGTTTTC--------------------------------------------------------AAATCTCCCAAATG----------CGAGC---------AAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   950757 211 -  4500979 -GTCCgtttttttacttga------------aactTAACTTTTATTTCGTATGT-GCGA----------ATTTCTATTGCATATATGTTTTAAATCATA---------TGATAATAGACAAAAAGAAGCAGATAGTTAAAAACAGTCG-CAAGTCTCAGAAATGTTTTAcatttagttgaa----------------------aacttaATAAGAAA-----TTTTAATATTC--------------------------------------------ATCGTCTAATAAAAAACTCTCACACGT---------TGAGTT-------Gaagta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941396 158 + 20921866 TACTCATTCTTCGAATTGT------------TCATTCATTAACATTcaacgttt--tct----------ttttctattgta---atgttcttttttatcctgtctt--ctgaatttattgaaa-------------tacGTTCAATT--CAAGTTTCACTCAG-----ACAATATTTTAGG----------------------AAAACAAGATAAGA------CATATCT-----------------------------------------------------------GAATA--------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2229379 139 +  4147112 aactttttccttg-------------------------------tttcatgtttcattt----------ttttttcttgag---atgttttattttacagcggttt-------tttattagaa-------------tgaa----------aaacttttctgat-----acAAACTATTGAG----------------------AAATTAGTACAAAA------Cgcatttttc------------------------------------------------tcggaaaaaaata--------------------------------------
i caePb3.Scfld02_0      I 33 I 104
s caeJap4.Scaffold18142  117924 290 -   343467 AAATTTCTTTTAAAACAATACTATAAAAACGACGtttattaaaaatcaaaaggcaattttgtacaaaaattatttacggtt--ttttttttgttttagaaGATCTATCTGAAATCTAGTAAAA-------------TAAATTTCCCAGATGAATATCGCTGAC-----AACAGTCATCGGG-------GTTATAttctgtttttaatttttaaaaat--attttttggccttttACTGTACAGGGatgtgctggcgactgccctcgcgaaagttcgcgccattgaaaaaaaattttgaag-------------ttaatttttcaggcagaga
i caeJap4.Scaffold18142 C 0 I 248

a score=1248.000000
s ce10.chrX             3896696 7 + 17718866 AAAGATA
s cb4.chrX              9042274 7 + 21540570 AAAGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   950968 7 -  4500979 aaaaatt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2229518 104 +  4147112 I
e caeJap4.Scaffold18142  118214 248 -   343467 I
e caeSp111.Scaffold630  5941554 0 + 20921866 C

a score=-19727.000000
s ce10.chrX             3896703 146 + 17718866 ATGAAATTTTTCGCTTTTTTATCATCTTTCCCCGAAAAGGGAAAATTGGATTTTTCGCCAAA--ATCACGAAAAAACCTTAAAAAACAGTTGAAAAGTTCCCAACCCTGGTCAGGAATCCTGACCAGGGCTGGAAACTACTCAGGATC-------
s cb4.chrX              9042281  47 + 21540570 -------------------------TTATTCTCAGTAC-------------------CTCACCATCCATATTTTCGTTTTCAcc---------------------------------------------------------cattttc-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   950975  40 -  4500979 -------------------------ataatccAAAGAC-------------------ATAAT--TGCATGTGGAAAATTTCG--------------------------------------------------------------GTTC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941554  65 + 20921866 ATGAA----------CTTTTATTTATTAGTTGTAAGAA---------------------AAC--CTCCTGTGATAACATCAAAA---------------------------------------------------------TAGTCTGAAAGTGC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2229518 104 +  4147112 I
e caeJap4.Scaffold18142  118214 248 -   343467 I

a score=-772.000000
s ce10.chrX             3896849 22 + 17718866 CAAAAAAAATTACCAGTTACAA
s caeSp111.Scaffold630  5941619 15 + 20921866 --AAAATCATatcttgt-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2229622 17 +  4147112 CAAAGagaaaactccat-----
i caePb3.Scfld02_0      I 104 C 0
e caeJap4.Scaffold18142  118214 248 -   343467 I
e cb4.chrX              9042328  0 + 21540570 C
e caeRem4.Crem_Contig0   951015  0 -  4500979 C

a score=101991.000000
s ce10.chrX             3896871 212 + 17718866 ACTTTTAAGAAACCACAATTTT----TTTGTA-----------------TTATTCATATATAAGTAACGAGTCAAAAAAATTTGAATTACAATTAGTTATGC-GGAAAAGTGTAAACCCTCCGGGGAGT-----ACGGACCAAG--------------TCTCTATTTGTCAATCACTTTTTT------CTCTTTTCATATTCTC-TCCTTCTGGTGG--CAGATTCAATTTTT-CGGAATTTTTATATTTCGATGCACTCTCC-
s cb4.chrX              9042328 189 + 21540570 ----------------------------------------------------------------------taaaaaataactTAGATCACAATTAGTTATGC-GAAGAAATGCGAACTCTCCAGGGAACCCCTGCCGGACCAActctttttcactctttctctatttgtcaatcactttcttttttcccctttttcatattctc-ttgttcttctgggctgaattcaattttc-tgaatttttcatatcgCAATGCACTCTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   951015 161 -  4500979 ----------------------------------------------------------------------GaaaaaaaTACTAGGATCACAATTAGTTATGC-AGAGAAGTGTGAACTCTCCGGGGAGC-----ACGGGCCAAC--------------TCTCTATTTGTCAatcacatttt-------cctttttcatattcac-ttgttcttttgg--cagattcaattttc-tgaatttttcatatttcgatGCCCTCTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941634 180 + 20921866 --ttttaa------------------------------------------aattcgctttt---------agaaaaaatactcGGATCGCAATTAGTTATGCAAAAGAAGTGTGAACTCTCCAGGGAGC-----ACGGACCAAC--------------TCTCTATTTGTCAatcac----tttt----cctttttcatatttgCCTTGTTCTTCTGG--cagattcaattttcttgaatttttcatatttcgatgcactctc--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2229639 183 +  4147112 --ttttag--------------------TGT------------------TAATTCAAGTTG---------GCGAAAAATACTCGGATCGCAATTAGTTATGC-AAAGAAGTGTGAACTCTCAGGGGAGC-----ACGAACCAGC--------------TCTCTATTtgtcaatcactttttttt----tctttttcatattctctttg---ttctgg--cagattcaattttc-tgaatttttcatatatCGATGCACTCTC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  118462 230 -   343467 atttttaaagataCAAAACATTGATCTTTGAATTAAacaaattatcaattttttcaaacttttaaaaacaaaaaaaaatactggaatCGCAATTAGTTATGCAAAAGAAGTGCGTACCCTCGAGGGAAC-----GTGACCAAAG--------------TCTCTATCTGTCaatcactttt--------ttcttttcatattttt-tcg---ttctgg--cagattcaatttctttgaatttttcatatattgATGCACTCTC-C
i caeJap4.Scaffold18142 I 248 I 1385

a score=7333.000000
s ce10.chrX             3897083 70 + 17718866 CCCGTTCTC---CTTATCCCATACCCCAGAATTCTTTGTTCTCCG-ATTAATTTCGAAAGTGTATGTGAGAAAA
s cb4.chrX              9042517 65 + 21540570 --CGTTCT-----TTACCagttcttctatttttttcccatATTTTAATTAATTATAGAAGTG--CGTGAGAGGG
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   951176 63 -  4500979 TCCGTTCTG----CCAAcacattttttatcttttt----tatttc-attaatttgaGAAGGG--TGTGAGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941814 68 + 20921866 --cgttctt-tttcttactcattttttccttatttttcattcttg-gtttatttaTGAAACT--CGTGAGAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2229822 64 +  4147112 --CGTTCTTATTTTTAACCCAtatcttc-----ttttcgttttcg-atTAAACTGAAAAGGT--CGTGAGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I

a score=-2672.000000
s ce10.chrX             3897153 34 + 17718866 ATGGAGCAATTCTGCCGATCAAACataaaataaa
s caeRem4.Crem_Contig0   951239 25 -  4500979 ---GTGcat------aatttcagtttccagtaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941882 28 + 20921866 --AGGTCATC----CGGTTTTAATTTGCAAGAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2229886 28 +  4147112 --AGGGcatt----tcattttaaaattctgaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e cb4.chrX              9042582 39 + 21540570 I

a score=8759.000000
s ce10.chrX             3897187 238 + 17718866 aaaaatattttaGAAA-GAATGAACGAC-AGACCTCGCAAAATCGCTTGAGGGTGATTATTCAATGGACCAAATG-----------------AGAAATGAAACC----TCAAATT-TTC---------G------TC-------------TCATATTTT--------------------ATA-TTTT--------------------TCCAATGTTTTTGACATCACAAATTTCACCCAA---TTTTATACACTGCTTCCCCTTCTTGAATTATTGATATCAAG---AAGGCGACACCGACTTGCGTTCATAAACTTTGGTTTCTTCGAAATTTTCG---------
s cb4.chrX              9042621 298 + 21540570 AAAtatataataataa-taa---------agaTC-----GCGGCATCTGCAGTT--TTGCTCGAGG---CTGATATAGTGGATGAGGAAGAgcaaaattataga----aaaaact-TACGGAGCACGTGG-ATTTCTagttgaaatgaaaattcattGT-----AAGCT---ATGTAACATATGTTT----------GCCTTTTTATGTCTCTATTTATACAG--ATATATCTAACCCAAACTTTTTCTACGCAGCTTCAC--CGTTTAATAATTGATGAGCTACTCGTGGACACCACAACTTACGTTCATAAACTTTGGCTTCTAGAATGTATTTGGGATTCGAA
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   951264 217 -  4500979 aaatatataataataACCGG---------AGAGC-----ATATCGCTTGAGGGGGATTGGTCACGG---CTTATA-----------------CAAATTCAAACC----CCAAATT-ATC----CACGTG------CT-------------GCTCGTTAG-----GAG-------GTAAAATA-ATTT----------G---------GTCAGTGTTCACAACATTATATATTT--------CTCTTTATACGCAGCTTCTC--TCCTGAATTATTGATAATATA---GTGGAGACACCAACTTACGTTCATGAATTTTGGTTAC----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5941910 266 + 20921866 GAAAGtgtaataaaaa-agatggatTATAGAATA-----ATATTGCTTGAGGGTTATT------TC---TTGTTC-----------------TAGAATTAAACTTTGTGAATATT-ATC----CACGTGCTgctttt-------------tttactttttcatgaatttctctcaaaaagta-GTTT---AAGAGTAG---------GCCAGTGTTCTAGGCATCACATATTTTACTCAA---TTCAATACGCAGCTTCCC--TTTTGAATTATTGATAAAAGT---GTGGCGACACCGAGTTACGTTCACAAACTTTGGTTCCTTAATAAATTtcg---------
i caeSp111.Scaffold630  C 0 I 278
s caePb3.Scfld02_0      2229914 253 +  4147112 gaaattatgaaaatga-agacg-------aAAGA-----ATATAGCTGGAGGgttattttgcaatt---tttatt-----------------tgaatttataTCTCCTAGATTTCAACC----CACGTGC-----TT-------------TTTAATTAT-----gattgcaaagaaaaaata-ttttttaaaaagttg---------acCAGTGTTCTTGACATCACATATTTTACCCAA---TTTTATACGCAGCTTCCC--TTCTGAATTATTGATAGGAAG---TTGGCGACATCAAGTTATGATCATAAACTttggtttctcaaaaa---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I

a score=-19307.000000
s ce10.chrX             3897425 178 + 17718866 ----------------------TCATTGGCGGTTAGAGAAAAGTATTGA---TTGAAATAAGCACCatt--ataatatttataattttttaCTGTG--------CTGAGAAGTGCTATGGTTACTGTTTTTTTAAA---ACATG-TTTTATGTTTA--ATTTTTGTTCTTCtttaattattt---ttctttagtatttaattttaaaaaaGTGGTGT------CAAAA
s cb4.chrX              9042919 200 + 21540570 GATCTGCACATCAAGACCatatttttagagttttcttTAAGATGAATGAGCTTTTAGAAA------GTTTAAAGA-----GCGGTTATTCACTGAGAAAAAACACTTC---tcgatattcaaatttttgattgaaa---acgggattttaatttta--acttgagtattt------ttattc---atattttatatttactttatattaaaaattttttgagacaaaG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   951481 144 -  4500979 ---------------GCAATTCTTCTA------TCCTGAAG-----TGA---TTCATAAA------ATT--ACTC-----ATGATGATTCCCagag--------cttt--------------atttttttctaaaa---atcgaatctaatttttaccattttgGTTTAT------TTATTC---TGAGTCtgtat----tttagaaaaaaatttgttt----caaaa
i caeRem4.Crem_Contig0  C 0 I 378
s caePb3.Scfld02_0      2230167 108 +  4147112 --------------------------------------------attgg---tcCAAAAG---ACCGTT--GGAA-----TCGATGATTCATTGTT--------------------ATCAAGATTGTTTATTGAAATGTATGAGATTCAA-----ACCGATTTGATAGTT------TTATTTCCATGAATTTGTGT--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e caeSp111.Scaffold630  5942176 278 + 20921866 I

a score=-23687.000000
s ce10.chrX             3897603 508 + 17718866  
s cb4.chrX              9043119 556 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2230275 561 +  4147112  
i caePb3.Scfld02_0      C 0 I 153
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e caeSp111.Scaffold630  5942176 278 + 20921866 I
e caeRem4.Crem_Contig0   951625 378 -  4500979 I

a score=-430.000000
s ce10.chrX             3898111 182 + 17718866 TTATACATATCGACTTATAAAATGTTTTTGGAATGTTTTATTATTTAATTTCATTATATTTTGGGAATATCGAAAACTTT--GGAAACATTAATTTGATGAAAAATTTTACTTTCGATAATTTTCGCTT--TTTCTAACTCTATAATTTCCTTATTTTAATTACCACTGACACCTTCAAATAATTT
s cb4.chrX              9043675 169 + 21540570 CCCTGCCTTCCGACACA---ACTTTTTTACTAGCGCCCTCTAACTTGTATTCACAGTGTCATCCAAGGGCCGAGTGCTCTCTGTGTCGAACGATTCGTTGTAAAGTTACACTTTTCACAATTCCCTCTTATTTTCCTACCATCAGGTCTGCTCATTT--------------GTTCtcatctctttc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2230836 153 +  4147112 I
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e caeSp111.Scaffold630  5942176 278 + 20921866 I
e caeRem4.Crem_Contig0   951625 378 -  4500979 I

a score=-1151.000000
s ce10.chrX             3898293 25 + 17718866 TCTTCCTTTATTAACTATTCAAACC-
s cb4.chrX              9043844 20 + 21540570 ---tcttt---ctgtACCGTAGGACT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2230989 25 +  4147112 CCttcttttcacagtttcatagGTC-
i caePb3.Scfld02_0      I 153 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e caeSp111.Scaffold630  5942176 278 + 20921866 I
e caeRem4.Crem_Contig0   951625 378 -  4500979 I

a score=-3049.000000
s ce10.chrX             3898318  78 + 17718866 GCCCGAATGCACCGG----GGTCCACTGTTGTAAAGTTACACA---------TAACGATCGGCCTTTCCATTGTGCCTGACCATT----------------------------------TTGTAA
s cb4.chrX              9043864  17 + 21540570 ------------------------------------------------------------------------------------------------------------CCCCTAACTCGTTGTAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5942454 120 + 20921866 GCCTGAGTGCTTTGTCGGAGAGCAACTATTGTAAAATTACACTTTTCT----CATCGACC-TCCCTTCCATCGCTTCTGATCATTTGTTCCGTCTTCTGCGTTAAGGGCCACCAACTCATTGTAA
i caeSp111.Scaffold630  I 278 C 0
s caePb3.Scfld02_0      2231014 115 +  4147112 GCCTGAGTGCTCTGTCG--GATCAGTTGTTGTAAAATTACACTTTCTTCGCACATCGACC--CTTCTCTATCGGTTTTGCTCATTTGTTCTG-----CGCGTTCA-GGCCACCAATTCATTGTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I
e caeRem4.Crem_Contig0   951625 378 -  4500979 I

a score=33016.000000
s ce10.chrX             3898396 364 + 17718866 ------------------TACCTTTCGAT-----CATATTACATC-------ACTAAAGCAGTTGTT------CGACTTAA---TTCTATTTTATTTGTCGT--------CTAGATTACAAAAATGAGAATGGAAAAGAGAATTACTCCGTGCAT-----TTTTATGACTTCCTGGAAACAGTCATAAAACTCATT----------------CAAATCCTAATCCGTTGTAGTAGTG---------GTATTTCATTTCAATTT------TTCCATC--TTTCTCCTCG-AGGACCATTTTGTTGATAG-TTAAAA------------GAGGGGTGG---TATGGACCATTCATAATCCTTGCACAAAGATTTTAAGCTCC---ATGCCATATGCTCTGTGAGTTTGAGGGGTGGTGTTATGAAGGAGAG----GGAGGGAGTGACGACGATTGTGAAAAAGTGAAAAACCGAA
s cb4.chrX              9043881 364 + 21540570 ------------------TACCTTTTACTATATACCTATTACATCACAGAAA---GCAGCAGTTGTTCCATCCCATTGTCT-TCTTCGGTTTTCTCTTTCATCCTTAGGGCTCTATTACAA----------------GTCAATTATTTCCCACTGAATACTTATATGACTTTCTCAATACC-CCATAAAA-----TGCA----------TAACGATCTCTAATCC-GTGTAGT--TTCCTAGTTTCCCATTCGACTCCAATCCCACCAATCCCATTCTACCCTCCTCCTCCGATGAACC-----ATAG-TTT---TGGCA-------CCAAGAGAAAACTATGGACCACTCATAATCCTTTAGCAAAGATTTTAAGC-CCTTTTTGCCATATGtttgg------------------aaatgaaaagaaaCGAGCGGGAGAGCAAGAGC-----------------TGGTCACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   952003 359 -  4500979 ------------------TACCTTTCGAT-----CAAATTACATCACTAGGATCCGCACCAGTTGGT------CGTAttca-tctttcattttctccacAATTTTCGATGCTCtattacaaaaagaaaatg------gaaaattact-----CTGA----CTTTATGACTTTTTCGAAACAGTCATAAAAATCTCTGCA---TTCAGACTCAGGATTCCTAATCCTATGTAGT--TG---------ACATTTTATTCCGATCT------TtcccctcttttcttcttctcggaCCATTTTGTTGATAG-TTTATAtgacacttttttccaatGCAA---TATGGACCATTCATAATCCTTTTGCAAAGATTTTAAGC-CC---ACACCATATGCttct------------------gtttgaaaaagag-----aggagaaaaaagaa-----------------aagtcgc-
i caeRem4.Crem_Contig0  I 378 C 0
s caeSp111.Scaffold630  5942574 352 + 20921866 TACC-TTTACTATATCTCTACC-TTCGAT-----CATATTACATC-------ACTGCACCAGTTGCT------CATATTCCATTTTGTGCTCTACCTTCCAC--------CTCAAttacaaaaaggaaaag---agaacaaattattttctg--------ttttatgaCTTCTCAGAAACAGTCATAAA----ACTGCAAGCTTTTCAAACATAAATTCTAATCCGTGGTAGA--Tg---------acatttctcttcaatct---------------TTCCCCTTCGTAGAATCATTTTGTTGATAGTTTTGGGTGGCACTTTTT-TCGTTGCGG---GACGGACCATTCATAATCCTTTGGCAAAGATTTTAAGC-CC---TTGCCATATGCTCTGT---TTC-----------GAGTGtaggaaag---aagagaaagcaa--------------------------GA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2231129 361 +  4147112 TACCTTTTACTATATCTCTACCTTTCGAT-----CATATTACATCACAGAGTACCGCATCAGTTGCT------CCTATTTC-------------TCTTCCAC---TAGtttttcattacaaaaaagagaagct-aAGAAGAATTACTCCACT--------TTTTATGACTTCTTCGAAACGGTCATAAAATACACTCCCA-CTCTCAAACCAAAAATCCTAATCCGCAGTGGA--TG---------ACATTT-TATTCGAATC---------------GTGCTCTTTGACGAACCATTTTGTTGATAG-TTTGGGTGGTACTTTTT-GCG----AG---GATGGACCATTTATAATCCTTTTGCAAAGATTTTAAGC-CC---CCGCCATATGCTTCGT---Ctt--------gtagaattgaaaaaagaataagggAGAGCGA-----------------------GTCGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  118692 1385 -   343467 I

a score=236463.000000
s ce10.chrX             3898760 804 + 17718866  
s cb4.chrX              9044245 896 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   952362 794 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5942926 773 + 20921866  
i caeSp111.Scaffold630  C 0 I 481
s caePb3.Scfld02_0      2231490 792 +  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18142  120077 926 -   343467  
i caeJap4.Scaffold18142 I 1385 C 0

a score=693.000000
s ce10.chrX             3899564 33 + 17718866 TTTGTAGTCCTTGTTTGCCAACCTTTGTATCTT
s cb4.chrX              9045141 29 + 21540570 CTCCTGGCTCATGCGTGCGAATATTtgtt----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   953156 33 -  4500979 CACATGACTCGTGCGTGtgaatctttttatttt
i caeRem4.Crem_Contig0  C 0 I 314
s caePb3.Scfld02_0      2232290 25 +  4147112 AATATGACACCAACGCGTGactctt--------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18142  121003 30 -   343467 ---tttgtaCTTGCGTGTGAATCCGTtaatatt
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5943699 481 + 20921866 I

a score=250.000000
s ce10.chrX             3899597 2 + 17718866 TC
s cb4.chrX              9045170 2 + 21540570 tt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2232315 1 +  4147112 -t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  121033 2 -   343467 tc
i caeJap4.Scaffold18142 C 0 I 111
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-429.000000
s ce10.chrX             3899599 3 + 17718866 CGA
s cb4.chrX              9045172 3 + 21540570 cga
i cb4.chrX              C 0 I 39
s caePb3.Scfld02_0      2232316 1 +  4147112 c--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-173.000000
s ce10.chrX             3899602 27 + 17718866 ATTTTGCCATTGATTCCATCTTAGCTT
s caePb3.Scfld02_0      2232317 15 +  4147112 ---------ttgttttgattttgg---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I
e cb4.chrX              9045175 39 + 21540570 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-11052.000000
s ce10.chrX             3899629 209 + 17718866 --ACAAAATTCTCATTTTTTGTAACCATGTTAAACTGACTAATTGTTTTAGGTAAAAAAGT-----------AGGTACTCAG-AGTAGATTTTTATTTTTGGACCGAGTTTTAAAACAAGCAAGACGACACTTTTTTGGCATACATTACGGTTTGTGAGAACGTAACAAG--TTCTGAAACTACATTTTATAACAGTCACTTCCACTTCA--------CTTTCAAAAGTATTT------------------
s cb4.chrX              9045214 208 + 21540570 --gcaagtttctgaatttttgt-------ttgaact--CAGATTTTATTAATACAAGAATTACTGGTTGAAATGTTGCTCAGCAGGAAAACTTCATTT---------GTTCTATGATCTGAATTCCATTACtgt----------atttctttttgaaaaatattaaaaattcatttcaagCTTC-----------GTTACCTCCG-TTcataaaaaagatatcaaaag-attCTCAATTAACAAAATCTTT
i cb4.chrX              I 39 C 0
s caePb3.Scfld02_0      2232332 109 +  4147112 aagCGCTGTTGTGAAT-------------------------ATTTCA-----ACAATATTT-----------TGTTGCTAAGCATTAGTCACTCa---------------------------------------------------tacttttttaaaataattaa------ttttcaagttt----------------GCTTCG-TTCA--------ATTTCCAAAC-ATTT------------------
i caePb3.Scfld02_0      C 0 I 220
e caeJap4.Scaffold18142  121035 111 -   343467 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-948.000000
s ce10.chrX             3899838 235 + 17718866 TCTGACCAATGTTTCAAACAAATTGGAACTT--TTAAATTGCAATTCAA-----CTTTATAGCACTCTGAAAAAAATCTCTTCCGCTTAAATTTTTCTTAGGAAATATTGCAAATATTCCTGA-AACAATGATGCTAGACAAATATGTTTATTAAATAAGCAATTTCAAAAAAAAACGGA--AAAAAAATGTTTTCGA-AGTATTTTGGAAAATTTTTAATAAAAATTCGGGAAAAAAAACATTTT
s cb4.chrX              9045422 204 + 21540570 GTCG--CAATATT--------ATCAGCATTTGCTCAAATT-CAGTTAATGGACTTTTTATATCGTTTATCGGCACATATcaaccgtat---ttcctctaatgaAGC--TGAATATAATTTTGATCATAATCTtgct---------------tcctgtaaaagatatcaaaattgtgcccactaataaaatatttttgatactatgatgaataatttat-----------gggtaaacaaaagtttt
i cb4.chrX              C 0 I 265
e caePb3.Scfld02_0      2232441 220 +  4147112 I
e caeJap4.Scaffold18142  121035 111 -   343467 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=0.000000
s ce10.chrX             3900073 36 + 17718866 TCTGTAACATCAGTTTCTCAATAGGGGTTTTCGAAA
e caePb3.Scfld02_0      2232441 220 +  4147112 I
e caeJap4.Scaffold18142  121035 111 -   343467 I
e cb4.chrX              9045626 265 + 21540570 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-969.000000
s ce10.chrX             3900109 232 + 17718866 TTTTATGTGATTTTAAATTTTTCTTCTCAAATTTTCAAACTTTCT-TGATACCGTTCCAATCATTTTTCCAGCAAAGATAGCCCACATCTTAGTTTATATTACATTTTTCTCGGAATTCAAAACTTTGTTAAAATTTGTGCAAGGCCACTTCATTTGTTC---ATTCATAACAATGTCTAAAAAATTATTACTTCATCGCCGTATTTAAAACTTTTTGCCTA--ACTTTAGTGAACCA
s caePb3.Scfld02_0      2232661 183 +  4147112 ttttatccaaTATTCTACTTCTTTATTgaacttcttgttctttttctcaaatcgcTACAACCGTGTGGATTGCAACAACAActccgatttt--------------------------------------ttgaacttgttctAAACGACTTTAATCCGCCTGAATTCG-GACAACg-------aattagaactt--------tttttcaatctgtttGGGTATGGCTTATATTACTC-
i caePb3.Scfld02_0      I 220 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I
e cb4.chrX              9045626 265 + 21540570 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-14544.000000
s ce10.chrX             3900341 286 + 17718866 TTTTCCAAAACATTTTTAAATACT-AAGAATAGTATAAGTCTGTCCATTTATTT----------------TCTGTTTTCATCTGTAGGTGTTAAACAATTTTTTTATTAA--ATTTCGAAAAAAAT---------GGCAAAA-----------------------AACAAAACTATTTGGTAACTGTTATGAATTAGTGCTGTAATAGGTAATTTTTTAGCCGAACAAACTATTCAAATTGGAATATAAAAACTTTGAA------TATTTGTTAAACA------------AACCCTATTGTCCTAATAAGCAAACTAATTTGTCATAAAAATTTCGCA-----ATTTTCGACCAAACTTT
s cb4.chrX              9045891 297 + 21540570 --ttttccaataatttc--------tgaaacagtTC----ACGTTCAGTTTTTTCTACAGTGAACTACAATTGATCTT-----ATAgtc-acaaaacatttttttgataattattTTCTAAATACTCTCTAACGCGACAAACGAACGTCATTCCTTATGCAACCCAACAAAAGTA------------TATACATTGTTAATATACTTG--AA-ATCTGATC----CAGCCCTGCCAACT------ATAAACAATTTGGTCTATTCCGTTTATTCCGAA--------CGTCTcttctattttccaaaaaa--aaaacgtt---tcatgACGTTTTGCTATAACCATGCTAAATCGT-----
i cb4.chrX              I 265 C 0
s caePb3.Scfld02_0      2232844 248 +  4147112 --TTCTTGAGCACTGTCAACTACAGTAAGAGGGTTTTCGAATGTTCATATTCtt--------------gatttatttt---ccaaaGTCGAcgtgaaaattatttg--aatgatATTTTGAGCACT---------GGCAAAC-------------------------------------------------------------ATTTG--AATCTCTGA-------AGACTCTTCAATTCAGG--GTAAACGgtccaaattgtttttttttttgagaaataaaaatcatacAAACGATTGTTCAAATCA--ATTCTGAC-AGTCAGAACGCTATGATACGG--ATATTAACTCTA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I
e caeSp111.Scaffold630  5943699 481 + 20921866 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=1861.000000
s ce10.chrX             3900627 11 + 17718866 TCCGAAACACA
s cb4.chrX              9046188 10 + 21540570 TCCG-ATTACA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5944180 11 + 20921866 TCTGTAACACA
i caeSp111.Scaffold630  I 481 C 0
s caePb3.Scfld02_0      2233092 11 +  4147112 TCTGAATCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I
e caeRem4.Crem_Contig0   953189 314 -  4500979 I

a score=-181.000000
s ce10.chrX             3900638 50 + 17718866 ACTCTTCTCAATT-TCATCCGCGAATCGATGTCCATCATCCTT---------AACAGTCA
s cb4.chrX              9046198 59 + 21540570 CTTCCACCTGAAT-CATGCTTGAAATCGATCTCTTTATTTCTCTCGCTCTTATACAGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   953503 50 -  4500979 ACTCTTCTCGATTACATTCTCTAAACGCATTCCT---ATCCTCTC-------TACAGTCA
i caeRem4.Crem_Contig0  I 314 C 0
s caeSp111.Scaffold630  5944191 37 + 20921866 -----------TC-ATTCGACGGAATCGATGTTCATATTCC-----------TACAGTCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2233103 36 +  4147112 -----------TT-CCTTCCCGAAAACGATG-TCATACTTC-----------TACAGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121035 111 -   343467 I

a score=232474.000000
s ce10.chrX             3900688 483 + 17718866  
s cb4.chrX              9046257 486 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   953553 486 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5944228 507 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2233139 470 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  121146 557 -   343467  
i caeJap4.Scaffold18142 I 111 I 28

a score=606.000000
s ce10.chrX             3901171 28 + 17718866 CTCCATATTTCAATATTTTACTCAAAAC
s caeRem4.Crem_Contig0   954039 17 -  4500979 -----------aatttttttcttaaatc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5944735 17 + 20921866 -----------aacttttttcgaaaacc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2233609 11 +  4147112 -----------agtttc------aaatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  121703 28 -   343467 I
e cb4.chrX              9046743  0 + 21540570 C

a score=58577.000000
s ce10.chrX             3901199 559 + 17718866  
s cb4.chrX              9046743 457 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   954056 550 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5944752 583 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2233620 564 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  121731 553 -   343467  
i caeJap4.Scaffold18142 I 28 I 88

a score=-28521.000000
s ce10.chrX             3901758  72 + 17718866 TTATGAAATTT---------------------------------TTC-----------------CACCATCACAA--------------------GTTTCTCCTGACAT-------TTTCTT-------TC------------------GTTTCTTGTTTT--CAGTTATTAGAAA
s cb4.chrX              9047200  65 + 21540570 -----aaatta-------------------------------agaTC---------------------------------------------CCCTCTCTTTCCGATATACACATATATTTT-------TCCTA---------------TATATCTATTTT--GTGT------AAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   954606 129 -  4500979 atctgaaatCG-------------------------------AATTCTTGAAAATAGGTG----TACGGTAACAa----------agaattgttcttttttcctgattcttgttgttattttcttaGAATCCCAAACTGTTTGTCCGTTTATGCTTGTTTT--TGGTTCAGGAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5945335 116 + 20921866 tgttgaaattg-------------------------------aatttttttatctgaTTG----CCGGATAAAAATGACgatattaaaaatatatgatTTCCCTCTTTTAT---CATGATTT-------TC------tgtatg------tttttttgtttt--gtat-aTCGTCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2234184 155 +  4147112 ttttgaaattggtTTCAGGAATGGAAGACTTGAATTCaacataattttattttttgaatttccctcCGAAAAACTTCCTCGTCTCGAAAATGGTTTAGATCCCTATTAC-------TGTTTT-------TCTCCAAGTGTATA------TGTTATTGTTTTTAAGAT-AATGACGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  122284  88 -   343467 I

a score=54389.000000
s ce10.chrX             3901830 206 + 17718866 ACGTTCCTCATCACCAATG--TATG----CCTC------------TCCTAATCTATGCATTAGACTACTGTTTC-GT-G-GAATGATAATCTTAG--GCTGCTGCTG--GTACCAGCAGTTAACACAGCAGCCCTATGAATCCTTTATGCCACTCCATCGCCTCACGATTCTTACGACATTTGTTCTGCGCAGGCATCTGGTGCGTCTGCTTGCCAGAGGACC------------------ACCAGAGT
s cb4.chrX              9047265 178 + 21540570 ATGTTCCTCATTTTACATT--TATG----CATC--CAGCGTCATCCTT--ATCTATGCATTAGACGCTTGTTTCTGCAA-AAATGATAATGGTTG--CACGC-------ACA---GTCATT-----------CCAATGAATCCTTTATTTTACTCCATCGTC------------------TCATCGTAGCGACACATCTGGCGCGTCTGCTAT-TGTCGGACC------------------ACCTCAGC
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   954735 200 -  4500979 ATGTTCCTCATCTGACATG--TATGTTATCCTC--GACTACCATCTCTTAATCTATGCATTAGACTACTGTTTC-GC-A-AAATGATAATCTTTG--CCTGCTAGTA--GCA---GTTAGT-----------CCTATGAATCCTTTATGTCACTCCATCCTCTT-C-CCTCTTACGAAATTCATTCTGCGCAGGCATCTGGTGCGTCTGCTCA-CAGAGGACC------------------ACCAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5945451 215 + 20921866 ACGTTCCTCATCTTCTATG--TATGTTATCCACT-TTCTACCATCCTCTAATCTATGCATTAGCCTATTGTTTC-TT-AGAAATGATAATCTG--------CTACAGTTGTAT--GCAGTT-----------CCTATGAATCCTTTATGTCATCCTATGCCATC-CTTCTCTTACAACATTCATACTGCGCACGCATCTGGTGCGTCTGCTCACCAGAGGGCT-------CTGCCAGTAATACCACCAC
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2234339 214 +  4147112 ATGTTCTTCATCAGGCATGTATATGTTATCCTC--CTCTACCATCTTCTAATCTATGCATTAGCCTACTGTTTC-CT-A-AAATGATAATCTTAG--TATCCTACCA--ACAC--GCAGTT-----------CCTATGAATCCTTTATGCCACTCCATTACATT-CTCTTCTTACGACGT------TGCGCAGGCATCTGGTACGTCTGCTCACCAAAGGACCA------TTACTGAGACCACCCTCCC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142  122372 198 -   343467 ATGTTCCTCATCACACATG--TATGTTATCCGCTACACCACCATCCTCTAATCTATGCATTAGACTACTATTTT-GT-AGAAGTGATAATGCTAGATGCTGATGTGG--TCGG--ACCTTT-----------ACAATGAAT------TGTTAAACCATTTTAAC-CGCTGT---------------TGCGCAGGCA---------TCTGCTCACCAGACCTCTCCTTCTTCCTCCAATTGCACTAAGT-
i caeJap4.Scaffold18142 I 88 C 0

a score=-6795.000000
s ce10.chrX             3902036 46 + 17718866 ---------GGCTTACA---GGAGCTCAACATGTATATTTATTGCACTGGTAG----------AGATG
s caeRem4.Crem_Contig0   954935 25 -  4500979 ------------------------CTCAATAAATCCGAC-------CCAACAG------------ACG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  5945669 52 + 20921866 ---------AAGTGGGGCTACTACCTCAACAAATTAATC-------CAAAGAGTGCAGTGGAAGAACG
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2234556 39 +  4147112 ---------GGGTTAGG---CTACCTCAATAAATCCATT-------CCAACAG----------ACATG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142  122570 45 -   343467 GTCTTCTCAGAACACGA---TGACCGCAATAAATCCACG-------CAAACGG----------AG---
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9047443 34 + 21540570 I

a score=11716.000000
s ce10.chrX             3902082 23 + 17718866 TCAACTGTTTACAAGTCTCAAAA
s cb4.chrX              9047477 17 + 21540570 TCAACTGTTTATAAGAC------
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   954966 17 -  4500979 TCAACTGtttataacat------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5945721 15 + 20921866 TCAACTGTTTATAAG--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2234595 23 +  4147112 TCAACTGTTTATAAGATTTGAAA
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold18142  122615 23 -   343467 TCGACTGTTTATAGCCCTTGGAA
i caeJap4.Scaffold18142 C 0 C 0

a score=-9540.000000
s ce10.chrX             3902105 48 + 17718866 TGTTTCTGCCCTAACCCTcc---ccgggcccccccccccccccTCCCTCAC
s cb4.chrX              9047494 41 + 21540570 --TTCCT----AGACTATCC---GTACACTTCCCCTCCCCCCGTCTGCCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   954983 38 -  4500979 --tttc-----aaactatCCA--GCATATTTCA---TCCACTTTCCTCCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5945736 43 + 20921866 -ATTTTGG--AGAACTATC----GGATATtcctctttcaattttcctcCG-
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  122638 35 -   343467 -------------AGTATCCAACAGACACgcctccttttttttgttgc---
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2234618 32 +  4147112 I

a score=240596.000000
s ce10.chrX             3902153 500 + 17718866  
s cb4.chrX              9047535 536 + 21540570  
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   955021 512 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5945779 546 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2234650 502 +  4147112  
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold18142  122673 480 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-2912.000000
s ce10.chrX             3902653 19 + 17718866 -------TAATTTTGAATCATTCAAG
s caeRem4.Crem_Contig0   955533  8 -  4500979 -------TAGGTTT------T-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5946325  7 + 20921866 -------taGCTTT------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2235152 13 +  4147112 -------tagcttt------ttcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  123153 19 -   343467 TAATTActcatttt------tttat-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9048071 18 + 21540570 I

a score=-4846.000000
s ce10.chrX             3902672 31 + 17718866 ATGATGCTAGCTAGTATGTAAATTGTT-----AAAA
s caeRem4.Crem_Contig0   955541  9 -  4500979 ------------------TGAGTTGTC---------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5946332  8 + 20921866 ---------------CTTTAAAA-------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  123172 36 -   343467 tagttGTTAGTCAATAAGCAAACTGTTTTACGGAAA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235165  0 +  4147112 C
e cb4.chrX              9048071 18 + 21540570 I

a score=1780.000000
s ce10.chrX             3902703 5 + 17718866 GCTCA
s cb4.chrX              9048089 5 + 21540570 GCTCA
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   955553 5 -  4500979 ACTaa
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5946340 5 + 20921866 GATTA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  123208 5 -   343467 GTTCA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235165 0 +  4147112 C

a score=-8158.000000
s ce10.chrX             3902708 62 + 17718866 TCAAATAGTGTCAAAAATTTTTTATTTGTTGaaattttgttattttgttttgaaaagtagtt
s cb4.chrX              9048094 10 + 21540570 TCCA----------------------------------GGAACT------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   955558 19 -  4500979 gcgg----------------------------------gttactgt---------agtagtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  123213 22 -   343467 --AA----------------------------------ATAAATATGTTTCTAACGGG----
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235165  0 +  4147112 C
e caeSp111.Scaffold630  5946345  0 + 20921866 C

a score=-1519.000000
s ce10.chrX             3902770 21 + 17718866 actactcagtttttgccactt
s cb4.chrX              9048104 12 + 21540570 ----CTCAGCTG-----ACTT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142  123235 10 -   343467 --TTCGTATCTT---------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235165  0 +  4147112 C
e caeSp111.Scaffold630  5946345  0 + 20921866 C
e caeRem4.Crem_Contig0   955577  0 -  4500979 C

a score=-4071.000000
s ce10.chrX             3902791 25 + 17718866 ttttggaagtcatcgattgaaacat
s cb4.chrX              9048116  5 + 21540570 -------TTTTA-------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2235165 19 +  4147112 ttccgggATTCAT------GAGgat
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142  123245 15 -   343467 CTTTTCAAGTCATGT----------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5946345  0 + 20921866 C
e caeRem4.Crem_Contig0   955577  0 -  4500979 C

a score=-5260.000000
s ce10.chrX             3902816 55 + 17718866 gttccttacagtttgatggtctccatcagttttaattattaatattcacacattg
s cb4.chrX              9048121 25 + 21540570 -------ATGGTTTGACGTTTtctttcgggtt-----------------------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  5946345 21 + 20921866 -------GTTCCTCAGCAGTATAcatag---------------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  123260 26 -   343467 GTCCGTTAGGTATTGAGGGCATGCAT-----------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235184  4 +  4147112 I
e caeRem4.Crem_Contig0   955577  0 -  4500979 C

a score=-10739.000000
s ce10.chrX             3902871 26 + 17718866 tacggatttgaacatgcgacagtgct
s cb4.chrX              9048147 19 + 21540570 -------ctgtagtttctatTTTAAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   955577 19 -  4500979 -------TAGAAACTAGAACATTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5946366  7 + 20921866 -------------------ggttact
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2235188  5 +  4147112 ---------------------ttacg
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18142  123286 24 -   343467 --GACGTGTTAAAATgggaaaatgct
i caeJap4.Scaffold18142 C 0 I 51

a score=-16108.000000
s ce10.chrX             3902897 75 + 17718866 atagttttctcaaaaAGTTGCAAAAACTCGATGGTATCCCCTTTTTCCCCACTATTTG-TAAAGCTTCTTCACCTT
s cb4.chrX              9048166 37 + 21540570 GCCAAGTT---------------------------------------CAGACAAACTAGACAATATTCTCATTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   955596 29 -  4500979 GCAGAATT---------------------------------------AGAAATAAATA---AGTGTTCTGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5946373 35 + 20921866 gtaggttt---------------------------------------cataccgtttt-tcaatgttttctctcc-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2235193 27 +  4147112 gtaga------------------------------------------------gtCTA-AGAATCTGAAACccctg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  123310 51 -   343467 I

a score=-4536.000000
s ce10.chrX             3902972 15 + 17718866 TAGTAAAAAATTTGG
s cb4.chrX              9048203 15 + 21540570 AGCTAACGAAAATCA
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   955625 15 -  4500979 GACTATATAATATTA
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  5946408  6 + 20921866 ---------aaatcT
i caeSp111.Scaffold630  C 0 I 12
s caePb3.Scfld02_0      2235220 13 +  4147112 ga--agaaaaaatcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  123361  9 -   343467 ---TGATAAAAA---
i caeJap4.Scaffold18142 I 51 C 0

a score=-4246.000000
s ce10.chrX             3902987 18 + 17718866 TTCTGGTATTTGGTATTC
s caeRem4.Crem_Contig0   955658  2 -  4500979 ---------------TT-
i caeRem4.Crem_Contig0  I 18 I 2
s caePb3.Scfld02_0      2235233  7 +  4147112 -----------tGTATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  123370 14 -   343467 -TATAGTTGATTGTC---
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9048218 15 + 21540570 I
e caeSp111.Scaffold630  5946414 12 + 20921866 I

a score=28842.000000
s ce10.chrX             3903005 163 + 17718866 AGAGCCCTTCCAGTTTTAGTTCTACCCCCCCCCCCCCCCCCTTTAATCAATCA----TTTTGTAACAAACAGT---------TTCATTC---------AGTCATGTGTCTTCGA--AGTTTT-----GCGGAC-GGACATAAATAACAT--AAAAAAGTG-AAATTTCCTCT--CTGC----ATGGTTTATACGGT---------CTCTGT
s cb4.chrX              9048233 155 + 21540570 --------------------------------------TCTTCTAATCAATCACTCCTTTTGTGACAAACCGTTTTGTCTCATTCCTTCT------CAAATCATGTGTCTTCAA--AGTTC------TTCGAC-GGACATAAATAAcatagaaaaaagtgaaaacttcCGCTAGCTGCTGATATGGTTCACCTCCC---AGATCATTCTGT
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   955662 164 -  4500979 --------------------------------------TGTTTTAATCAATCA----TTTTGTTACAAACGGTTTGGTTAAATTCATTCTTCCTACCCAGTCATGTGTCTTCTA--GGTCTTCAAAGTTCGGC-GGACATAAATaacacagaaaaaagtgaaaatttccgCTAGCTACTGATATGGTTCAAGTCAC--GATAATAGTCTAT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5946426 187 + 20921866 AGAGCCATTCCAGAGACAG---------------ACATCATTCTAATCAATCA----TTTTGTAACAAACGGTTTGGGCGACTTCATTCTATCTACACAGTCATGTGTCTTCTA--GGTCTTCAAAGTTCTTTGGGGCATAAATaacatagaaaaaagtg-aaaccTCCGATAGCTGCTGATAGGGTTCAGATCAC--GAAAATAGTCTAT
i caeSp111.Scaffold630  I 12 I 94
s caePb3.Scfld02_0      2235240 165 +  4147112 --------------------------------------TGCCTTAATCAATCA----TTTTGTAACAAACGGTTTGGTCGAATTCATTCTTCCTACCCAGTCATGTGTTTTCTA--GGTCTCCAAAGTTCGCC-GGGCATAAATAAcgcagaaaaaagtg-aaaccgCCGATAGCTGCTGATATGGTTCAGTTCATAGAAGAATAGTCTAT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  123384  55 -   343467 -------------------------------------------------------------------------------AGATCTACTGT--------AGTCTTAAGGATTCCGTTGGTCTC-----TT-----GTTCATAA-------------------TAATTTCTGT----------------------------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-20048.000000
s ce10.chrX             3903168 89 + 17718866 GCTTACTATCGAAGATAAACTGATATGATGAGAAACACCACCACGTCCGGGTTTCAAATCTTCAACACTTTCCCATATTTTCAATGCAC------
s cb4.chrX              9048388 34 + 21540570 --GTACTATCGT-------------------------------AGTCGATgg-------cctctattttttttc---------------------
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   955826 68 -  4500979 --GTACTATCGT-------TTGATATGAA----------TGACAGCTGAGGAATTC-TTCCACTATCCCTCTTTTCATTAATAATGCC-------
i caeRem4.Crem_Contig0  C 0 I 30
s caePb3.Scfld02_0      2235407 75 +  4147112 ----ACTATCGG-------TTGATAGGAAATG---TGTTTTGCATTCAATATAGCCATTCAAttgttcttctcttcattaATAACtcct------
i caePb3.Scfld02_0      I 2 I 14
s caeJap4.Scaffold18142  123439 61 -   343467 ----------------------------------GCACATCACAGCACATCAGAGCACTTCACTATCTTCTTGAGCACTCATTTTTctcacactc
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5946613 94 + 20921866 I

a score=185325.000000
s ce10.chrX             3903257 373 + 17718866  
s cb4.chrX              9048434 460 + 21540570  
i cb4.chrX              I 12 I 1
s caeRem4.Crem_Contig0   955924 438 -  4500979  
i caeRem4.Crem_Contig0  I 30 I 81
s caeSp111.Scaffold630  5946707 438 + 20921866  
i caeSp111.Scaffold630  I 94 I 112
s caePb3.Scfld02_0      2235496 421 +  4147112  
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18142  123500 348 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=100.000000
s ce10.chrX             3903630 1 + 17718866 G
s caeJap4.Scaffold18142  123848 1 -   343467 G
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2235917 0 +  4147112 C
e cb4.chrX              9048894 1 + 21540570 I
e caeSp111.Scaffold630  5947145 112 + 20921866 I
e caeRem4.Crem_Contig0   956362 81 -  4500979 I

a score=-18056.000000
s ce10.chrX             3903631  92 + 17718866 CA------CAAACAAATG---GTTG------TTTCATTTTTGAATCGCCGCCAAATT-------CAAAATCCTCTGTACATTCCTCTC--------------------------AGCTAAAATTTCACACAGAAAAAGAA
s cb4.chrX              9048895  35 + 21540570 -AAGAGA-CAGGgaaat-----ttt------ctacagt----aatcc---------------------------------ttgct-------------------------------------------------------
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0      2235917  63 +  4147112 --------CAGTCAAATG---GTTTCTAAGACTACAGT----AAACCAAatttgaac-------taattttttttgtctttttct-------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  123849 128 -   343467 --AGAGACCAGAGAATTGTgcgttc------tttcttt----tttcgaaaattaaacAGATACATACATTCGTACACACATTCCACTCCAGAAACACGGATGTGTTAAACAATTAGCAAATATCCTCTGAGGAGTGAGTG
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5947145 112 + 20921866 I
e caeRem4.Crem_Contig0   956362  81 -  4500979 I

a score=-4971.000000
s ce10.chrX             3903723 17 + 17718866 ---AAACAAAAAATTAT---ACT
s cb4.chrX              9048930 11 + 21540570 ------TATTAGATTAT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   956443 12 -  4500979 -----AAACAAAACTGT------
i caeRem4.Crem_Contig0  I 81 C 0
s caePb3.Scfld02_0      2235980 13 +  4147112 -------gaaaaatcataca---
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18142  123977 17 -   343467 GAAGACAATAACATAAT------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5947145 112 + 20921866 I

a score=310036.000000
s ce10.chrX             3903740 1441 + 17718866  
s cb4.chrX              9048941 1438 + 21540570  
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig0   956455 1611 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5947257 1550 + 20921866  
i caeSp111.Scaffold630  I 112 C 0
s caePb3.Scfld02_0      2236003 1519 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18142  123994 1615 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-5577.000000
s ce10.chrX             3905181 65 + 17718866 ----TGTCCGT--------------------------CCAGATAA--AAGAGGAAACAATTTCGTTTGATT--------TAACT---TCACTAAATTGGAAAATAATT
s caeRem4.Crem_Contig0   958066 81 -  4500979 ----tgtcCGTGTACgac--aaatattttattgaggAGTAGATAC--GCGAGGACACGAATTTGTTTC-----------TCTAC---Acgcaaaatgagaaa-----t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5948807 96 + 20921866 ----CGTCCGTGAACGACCAGAATCATTCATTGAAGAGTAGATACGAGAGAGGACACaaatttgttttccttcttcttgtctcc---acacaaaaatcgaaa-----t
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2237522 87 +  4147112 ----TGTCCGTGTACGACAAAAATATATCATTCGAGAGTAGATAC--TGGGGGACACAAATGCGTTTTC----------TCTCCGAAACACGAAATTAGGAA-----T
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18142  125609 36 -   343467 cggGCGTCCGC-------AAAGAAATTACATTGATAGTTAGTG-----------------------------------------------------------------
i caeJap4.Scaffold18142 C 0 I 2
e cb4.chrX              9050379 79 + 21540570 I

a score=29625.000000
s ce10.chrX             3905246 155 + 17718866 CGGGAACAA--------GGTGGATGA-AGAAA-----------TCTTC----------AA-ATTTC-CG----AAATCTCG--CGGTTCTGC-TTTGACCTCTCAAGCGGC-TC-------TTCATAGGAA-TCGCACGCGTA-TTTTGTTAGCAAA---CATTT-CCCAACCA-TATATATCTCAACAAATAGT--TGCAAC--------------------------AGCAAAGA
s cb4.chrX              9050458 166 + 21540570 CGAAAATAAGTTTtgcggaaaaat---cgaaa-----------tctcc----------AAGATCGG-CGCCGAAAAGTTCGCG------------GGAACTCTCAGGCGGCTTT-------TTCGTTATGATTTGCACGCGTGTTTGTATAAATAGAGACAATTTGTTTATCCCTTATATCTC-CAACAGATGATTATGTAAC--------------------------AATGAAGA
i cb4.chrX              I 79 I 580
s caeRem4.Crem_Contig0   958147 173 -  4500979 cgggaa------------aagaat---agaaa-----------tctCC----------AAAATCTC-CG----AAAGTTCGCGCGATGCTAC-TTTGAACTCTCGGCCGGC-TT-------TTCGTAATGA-TTGCACGCGTA-TTGTATAAACAGA---CATTTGTTTATCCA-TATATATC-CAACAGATGATTATGTAACAGGGTA-------GGGGATGAGGTCaagtgaaaa
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold630  5948906 147 + 20921866 -----------------CGGGAAT---CGAAA-----------TCTCC----------AAAATCGG-CG----AAATCTTA-GGAAAGGTGCTTTTGAACTCTTGGCCGGC-TT-------TTCGTAATGA-TCGGACGCGTA-TTGTATAAACAAA---CATTTGCTTATCCT-TATATACT-CAACAGATGATTATGTAATATTATA----------------------------
i caeSp111.Scaffold630  I 3 I 10
s caePb3.Scfld02_0      2237613 173 +  4147112 -----------------cgggaatgaagaaaa-----------tctcc----------aaaaacttccg----aaatctCA--CATAGATGC-TTTGAACTCTTAGTCGGC-TC-------TCCGTAATGA-TTGCACGCGTA-TTGTATAAACAAA---CATTTGCTTATCCT-TATATAAC-CAACAGATGATTATGTAACAGTATACGGGTCAAgtgatgaa----attgaaga
i caePb3.Scfld02_0      I 4 I 21
s caeJap4.Scaffold18142  125647 175 -   343467 CGGgga------------gaaaat---agaaaagacACGAATTTCTCCCGCCTCGAGAATAGATAT-CT----AAATGTTG--CGGTCCTCT-CTTTGCCTCACGGTTGTC-CTAGAGGAATACATAGAAGCTCGCACGCGCA-TTGTATTAGCAAA---CATTGGAATATC---TTTATACC-CATCAATTTATTATGCAACCGTA------------------------------
i caeJap4.Scaffold18142 I 2 C 0

a score=-20768.000000
s ce10.chrX             3905401  58 + 17718866 TGGAAAGATTACTCTTCGC----AAAAAAACAT---------------------------------------------------------------------GATC-TTTACA-TATGTTTGTTAATGAAACA--
s caeRem4.Crem_Contig0   958330  56 -  4500979 aTAGGAATACGGtatttagtttaaaaaaaattt---------------------------------------------------------------------gtta-tttgG--TATA---ATT--AGCAtca--
i caeRem4.Crem_Contig0  I 10 I 6
s caeSp111.Scaffold630  5949063  54 + 20921866 TTGAGGACTCACGATATACTGTAACATAGACAT---------------------------------------------------------------------GCTG-ACTGGATTAGG---------GCAACA--
i caeSp111.Scaffold630  I 10 I 3
s caePb3.Scfld02_0      2237807 130 +  4147112 ttgaaGTCTCATTAGGTGTTATGGGATTGATATTACTCATATTTATGAAACACTTTGTCACCGATACCATGGTTTTCGAACGGACTCTAGATACAGACTTCAGATA-ATTGTATTATATTCATT--TGTATTA--
i caePb3.Scfld02_0      I 21 I 3
s caeJap4.Scaffold18142  125822  61 -   343467 -GGAAGAATTACGGT-TGTGGGGAAAAAAGTAT---------------------------------------------------------------------AACACATTGAATAATATTGAGG---ATAATAAA
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9050624 580 + 21540570 I

a score=613802.000000
s ce10.chrX             3905459 952 + 17718866  
s cb4.chrX              9051204 994 + 21540570  
i cb4.chrX              I 580 C 0
s caeRem4.Crem_Contig0   958392 966 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5949120 944 + 20921866  
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2237940 978 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142  125883 923 -   343467  
i caeJap4.Scaffold18142 C 0 I 101

a score=49159.000000
s ce10.chrX             3906411 69 + 17718866 CA---ATGGGTTTGGCTGCCT-------------------AACT-----AAAACCATCACGCAT-TTTCTAAACTTTGCTATAGTTTGGTTACGTCT
s cb4.chrX              9052198 96 + 21540570 TGGATAT-GGTATGGCTGTCTCTAACtaaatcaattcaaaaactgaaaaaaaaacatcacgCATATCTAAAAACTTTGCTATAGTTTGGTTACGtcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   959358 70 -  4500979 CA---AT-GGTATGGCTGCCT-------------------AACT----AAAAACCATCACGCATATTCTAAAACTTTGCTATAGTTTGGTTACGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5950064 67 + 20921866 TG---AT-GGTATGGCTGCCT-------------------AACT-----AAAACAATCacgcaaa--aaaaaacttcgcTATAGTTTGGTTACGTCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2238918 66 +  4147112 CA---AT-GGTATGGCTGCCT-------------------AACT-----AA---AATCACGCATATCTAAAAACTTTGCTATAGTTTGGTTACgtcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  126907 66 -   343467 ca---ataggtatGGCTGCCT-------------------AACT-----CAAA--ATCACGCA--TTCTAAAACTTTGCTATAGTTTGGTTATGGTT
i caeJap4.Scaffold18142 I 101 I 62

a score=-927.000000
s ce10.chrX             3906480 35 + 17718866 TTTCTGATACTTTTTTTTTTGGA----------ATTTTGAAGTTG
s cb4.chrX              9052294 40 + 21540570 ttttattgatttttttctctgaaaccgT-----CTTTCAATGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   959428 30 -  4500979 TT---------------TCTGaaaccttttttattttcaaagttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5950131 31 + 20921866 Gttctgtaat-------tttgaattc-------ttctcaGAGTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2238984 25 +  4147112 ttt------t-------tttgaattc-------ttttcaaCGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  126973 62 -   343467 I

a score=375628.000000
s ce10.chrX             3906515 1043 + 17718866  
s cb4.chrX              9052334 1081 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   959458 1049 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5950162 1049 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2239009 1065 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  127035 1134 -   343467  
i caeJap4.Scaffold18142 I 62 I 16646

a score=10922.000000
s ce10.chrX             3907558 78 + 17718866 CATTGAATTTGCAAA----TTAATTTCATATGGTGAG--TT-----CGTAATAGTCGTACATGTTCCTGCATTTAATGTTTACAATAAA
s cb4.chrX              9053415 72 + 21540570 ttttcaataacaaaa------attttaatatggTGTG--TTGGAA-TTTGATAGACTC----ATTT----ATTCAATTcttgcaataaa
i cb4.chrX              C 0 I 4311
s caeRem4.Crem_Contig0   960507 82 -  4500979 tttttaatcgTCAAATGACACACTTTTACTTGGTGAG--TT-----TCTTATACCCTCTCTAATTTTTGCATTTAATGTTTCCAATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5951211 80 + 20921866 tttttaatgacATTA--------TTTCACATGGTGAGTTTTGATT-TATTGTAgtgtttctgatttttgcaTATGATGTTTAcaataaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2240074 79 +  4147112 CCTGAAATGACCCAA--------CTACACATGTTGAG--TTGATTCTTTTGTAGTAATACTTGTCAATGCATTTAACTTtaacaataaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  128169 16646 -   343467 I

a score=-5413.000000
s ce10.chrX             3907636 47 + 17718866 CC--GATTTCA-------AAACCTAA--TCACGTGTGATGCAGAAACTGGAAGTAGTT-----------------
s caeRem4.Crem_Contig0   960589 66 -  4500979 -CTGTTTTTGATATAAACAGAGTGAAGTTTG--------ATTGACGTGAAGAGAGGAACTTTAACATAAATCAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5951291 31 + 20921866 -c----------------aaaatgaa--ttg--------ataGAAACTAGAAACAGTT-----------------
i caeSp111.Scaffold630  C 0 I 395
s caePb3.Scfld02_0      2240153 38 +  4147112 -c--tttttga-------aaatccaa--ttg--------GCCGAGGTTAAAAAAGGAA-----------------
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I

a score=2524.000000
s ce10.chrX             3907683 31 + 17718866 ---GTAATGAACGGGGGTTTAAACAGAAGGCAGA
s caeRem4.Crem_Contig0   960655 31 -  4500979 ---CTAAATAAATGTGGTTCAAACAGAAGACAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2240197 33 +  4147112 TCTGTCAAT-GATAAGGTTCAATCAGAGGACGGA
i caePb3.Scfld02_0      I 6 I 332
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I
e caeSp111.Scaffold630  5951322 395 + 20921866 I

a score=1175.000000
s ce10.chrX             3907714 104 + 17718866 TGGATACAACAGGAACTAGTTGCAGCATTAGGTCATCTTGG----CAAACAGTAAGAAATAATGC-----------AATACTATATTGTAGTTTCGTAGATCGAATTTA-----AAACAAAAAA
s caeRem4.Crem_Contig0   960686 124 -  4500979 TGACTATCATTCAAACTAGTTGTAAGAACAAATTAATTTGGAAATTAAACTATCACACATACTACAGTCTATTGCAAATGCTATTCAGTAGTACAGAAGCTaaaaattatcttcaaaccaaaaa
i caeRem4.Crem_Contig0  C 0 I 73
e caePb3.Scfld02_0      2240230 332 +  4147112 I
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I
e caeSp111.Scaffold630  5951322 395 + 20921866 I

a score=0.000000
s ce10.chrX             3907818 6580 + 17718866  
e caePb3.Scfld02_0      2240230  332 +  4147112 I
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I
e caeSp111.Scaffold630  5951322  395 + 20921866 I
e caeRem4.Crem_Contig0   960810   73 -  4500979 I

a score=33893.000000
s ce10.chrX             3914398 147 + 17718866 TCGGGGCCGAAGCACAC----CA-----GGTCTGTAGAGGAT-GTGCCGAAGAGTCATCATTCAGACTGCAGCGGGGATTGAACC--AGAGTACGAGGACCGAAGTACCGCA-CACTACCACTCAACCAC-ACAGCTGTTGTTGGGGCTTTGGAGGTACGG---
s caeRem4.Crem_Contig0   960883 157 -  4500979 TCGGGGCCGAAGCACACCTAACATACACGTTCTGTAGAGGAT-GGGCCGAAGCGTCATCATTCAGACCGCTGCCGCGGTCGAACCATAGAGTCCGAGGACCGAAGTACCGCACCACTACCACTCAACCACAGCTGCTGTTGGAGGAGAC---AAGGTGTGG---
i caeRem4.Crem_Contig0  I 73 C 0
s caeSp111.Scaffold630  5951717 139 + 20921866 TCGGGGCCGAAGCACACCACACA-GCACGATTCCGAGAGGTTAGGACCGAGGTA-CAACGTCAGAACCGGTGTGGGGATTGAACCATAGAGTACGAGAACCGAAG-------------------TACCAC-ACAGCTGTTGAGAGGACT---GGGGAAAGAGGA
i caeSp111.Scaffold630  I 395 I 75
s caePb3.Scfld02_0      2240562 158 +  4147112 TCGGGGCCGAAGCACACCTCACA-GCACGATTCGGAGAGGTTAGGGCCGAAGCG-CAACATCCGTACCGCTGCGAGGATTGAACCGTAGAGTACGAGGACCGAGGTACCGCACCACTACCGCTCTACCAC-GCAGCTGTTGGGAGAATG---AGGGTTCGAGGA
i caePb3.Scfld02_0      I 332 I 5
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I

a score=-905.000000
s ce10.chrX             3914545 11 + 17718866 GTAATTCAAAA--
s caeRem4.Crem_Contig0   961040  6 -  4500979 -------GGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2240725 11 +  4147112 ATATCTTGAGA--
i caePb3.Scfld02_0      I 5 I 8115
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I
e caeSp111.Scaffold630  5951856 75 + 20921866 I

a score=-364.000000
s ce10.chrX             3914556 51 + 17718866 CATACCTTTTCTCCTCTAAC---------AGTGGTCTCGCGAGATACATGTTGCTGCGTG
s caeRem4.Crem_Contig0   961046 60 -  4500979 TATATCTTTGGTGAGGGAACGGGTGAGGAAGGGGTGAGAAGGGGAAGAGGACACTGGGTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2240736 8115 +  4147112 I
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I
e caeSp111.Scaffold630  5951856 75 + 20921866 I

a score=-10267.000000
s ce10.chrX             3914607 122 + 17718866 AAAGGTGCGGTGGCCGGTGTAATGCGGACTAGA--------------------------------ATACCAAGCGCGGAAAATAATAATTACT-GAAACAGTTTTGACTGCTCCCTTCTGTTATATTCACAGT---------------TCTCTTTCGCGGTGATAAACAT-----------------
s caeRem4.Crem_Contig0   961106 183 -  4500979 -TATGTGT-GCGGCTGGTGAATTAGTGGCAAGAGgtctccttttccttttttcgaggcaaataaaaaaaaaagcttgTTTGATATTAgcttctcgaaaaaaattctgctGTTAACTCTCATTCCTCTCCCGTTACCTCTCATACCCGGTTCTTGTAAAAGTGGC--TCGCCTTTTGCCAAATAAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5951931  57 + 20921866 -----------------------------------------------------------------AAAGAAAGGGTGCGCAATAGAAG------GAAAATAAgaccgtt---------------------------------------ttcttttttcagtga---tcGT-----------------
i caeSp111.Scaffold630  I 75 C 0
e caePb3.Scfld02_0      2240736 8115 +  4147112 I
e caeJap4.Scaffold18142  128169 16646 -   343467 I
e cb4.chrX              9053487 4311 + 21540570 I

a score=-6896.000000
s ce10.chrX             3914729 30 + 17718866 ----GGTCA--AAAAAAAAATAT---CCATGGATCAAAT
s cb4.chrX              9057798 29 + 21540570 ----Ggtta--aagaaaaatgag---aaataaaaCGAA-
i cb4.chrX              I 4311 C 0
s caeRem4.Crem_Contig0   961289 31 -  4500979 -----gttc--attcaaaattatttcgtATGTAGAGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5951988 20 + 20921866 GTCATGTTcctgttttcaat-------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2240736 8115 +  4147112 I
e caeJap4.Scaffold18142  128169 16646 -   343467 I

a score=3946.000000
s ce10.chrX             3914759 43 + 17718866 ATTATTTATTATTAACA-------------ACTAAAATACGTT----TAGTTAACAACAA
s cb4.chrX              9057827 51 + 21540570 GCATTTCATTTAAAACAAcagttgaaa---attcgaataattT------AACAATAGGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   961320 53 -  4500979 -CTTTTCACTATCAACAAATACTAAAGTTTAATAGAATAATTT------ATAAGTAACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952008 50 + 20921866 --tatttattaccaacaaacacagaa----aatgaaataattt----aaatCAAGAAACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2248851 56 +  4147112 attaTTTATTATCAACAAATATCAAA----TATACAATAATTTATGAAATCCCATCAACA
i caePb3.Scfld02_0      I 8115 C 0
e caeJap4.Scaffold18142  128169 16646 -   343467 I

a score=286009.000000
s ce10.chrX             3914802 618 + 17718866  
s cb4.chrX              9057878 624 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   961373 618 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952058 619 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2248907 563 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  144815 565 -   343467  
i caeJap4.Scaffold18142 I 16646 I 79

a score=-20066.000000
s ce10.chrX             3915420 184 + 17718866 GTGGGAATTTTCTTCTAAATACATTCTTGATTGTACAACCTAACTAAATATCATAACTGAACAATCCTTTAATTTAATTTTTCAACATTATTTCATATTTGATTTCGTGACTTCGTGACGTTGGAAAAAAATGGT--AGTTGAAAACTGAGTTAATTTGAAAAATAATCTTCTTCAATCGTCTTGC
s cb4.chrX              9058502  49 + 21540570 -----------------------------------------------------------------------------------------------------------------------GTTGCGAGAAGAAtattaaatttgaaagtttaccAATTCGAA------------------TTCCTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   961991  36 -  4500979 -----------------------------------------------------------------------------------------------------------------------GTTCCTAATTGGTggcaaaattaaaaactttcttga-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2249470  58 +  4147112 -TGGGA---------------------TGATTATAT---------------------------------------------------TTATGTAATA----------------------GATTTATTATGAgaatttcattccaaaatctTTT---------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  145380  79 -   343467 I
e caeSp111.Scaffold630  5952677   0 + 20921866 C

a score=819.000000
s ce10.chrX             3915604 3 + 17718866 AAA
s cb4.chrX              9058551 3 + 21540570 AAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5952677 3 + 20921866 aaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2249528 0 +  4147112 C
e caeJap4.Scaffold18142  145380 79 -   343467 I
e caeRem4.Crem_Contig0   962027 0 -  4500979 C

a score=-11585.000000
s ce10.chrX             3915607 101 + 17718866 TGAATAAATTGAAAACAAGTGTGTAATCTTAATTTATCAAATACGTTTCATATTGTATTATTCATTACATATTAAGCTATCAAGTGGCACCAATACAGAGT
s caeRem4.Crem_Contig0   962027  14 -  4500979 -----aaattgaa------------------------------------atattg----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952680  22 + 20921866 ---------tgaa------------------------------------ttattgaaT-----------TATTAAACT-----------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2249528   4 +  4147112 --------------------------------------------------------------------------GACT-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  145380  79 -   343467 I
e cb4.chrX              9058554   0 + 21540570 C

a score=11980.000000
s ce10.chrX             3915708 117 + 17718866 GCATTTTAAATCAATTACGCAAAAATTTAATTTTTGAAAAAAAATCAAAACTCACCGCCGCAGCCAATGGCAAACAAATAAGAAGCAAATTATGAATCATAGCCCG-AA--AAACGGAGT
s cb4.chrX              9058554  92 + 21540570 GTATTT---------------CAAATTCAGT-------------CGAAAACTCACCGCTAACACCAATGGTACGCACAGAAATAGAGAATAGGAAATCATAATCTgaaatcacagaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962041  74 -  4500979 ---------------------------------------------caATACTTACCGCCAATGCCAACGGTACACAGACAAGTAGAATACAGCGAATCATAATCTG-AATTTCACGGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952702  84 + 20921866 ---------------------ACAGTTTATT-------------ACTGAACTCACAGTAGCAGCCAATGGAATACAAATAAGAAGAAGCTTAAGAATCATAATCCT-AAT-TCGCGGAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2249532  75 +  4147112 ---------------------G----------------------ATTGTACTCACCCCGAAAACCACTGGTAAGAAAATAAGTAGAAGATTAGAAACCATAATCTG-AAT-AAGCAAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  145380  79 -   343467 I

a score=125063.000000
s ce10.chrX             3915825 167 + 17718866 GATACTTCTCACACTTCCTGTGATGTGCTTTTATAGAAAC---TACGGCACAG---GTGTCCGGTTTCGATAATCTCTGATACTAATACAATTCCTAAAT---GGATCATCTGCTC---AC--TGATACCGGT-CTCCTTATTGACTTTTTGTT-TCCGTCA----TCTCATT-CGAGAGGTTAGCAG
s cb4.chrX              9058646 179 + 21540570 gatACTTCACACTTTTCCGGCCATGCGCTTATAAATCAAC---TACTTGAGTGTTAGTTTCCGGTTTCGATAATCACTGATACCAATACGAATCGTAAATGGTGGATCATCTGCTCGCTGC--TGCTACCGGTCCCCTTTGTTTGCCTTTTGTT---CGTCATTTTTCCCATT-CAAGAGGTTATCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962115 172 -  4500979 GATACTTCACACGTTTCCGGCAATGCTCTTTTATATAAAC---TACTCGAGAG-TGGTTTCCGGTTTCGTTAATCGTTGATACCGATACGAATCGTAAATG--GGATCATCTGCTC---GC--TGCTACCGGT-CCATTTATTTGCCTTGTGTT-CCCGTCA--TTTCTCATT-CAAGAGGTTATCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952786 170 + 20921866 GATATTTCACACATTTCCGGAGATGC-CTTTTATATGAAC---TACTGAAGAG---GTTTCCGGTTTTGATAATCGTTGATACCAATACGATTCGTAAAT---GGATCATCTGCTC---GCAGTGTTACCGGT-CCGTTTGTTTGCCTTCtgtt-ttcgtca--ttttccatt-caagAGGTTATCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2249607 169 +  4147112 GATACTTCACACGTTTCCGGTGACTCTCTTTTATATTAAT---TACTCAAGAG---GTTTCCGGTTTCGATAATCGGTGATACCAATACGAATCGTAAAT---GGATCATCTGCTC---GC--TGCTACCGGT-CTCTTTGtttgctttttgtt-ttcgtca--tttttctct-caagagGTTATCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  145459 174 -   343467 GATATTGCACACATTTCCGGCCAAA--CTTTTATATGAGCAGAAACTCAAGTG---CCTTCCGGTTTCGATTGTGTATGATACCGATACGCTTCACGAATGG-CGATCATCTGCTT---GC--ACCTACCGGT-Ctttttatttgccttttatttttcatca--attGTCACTGCGAGAGGTTATCAG
i caeJap4.Scaffold18142 I 79 I 1383

a score=-1284.000000
s ce10.chrX             3915992 9 + 17718866 CCGTCT---GGT
s cb4.chrX              9058825 6 + 21540570 AAGTCT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962287 6 -  4500979 TGGTCT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5952956 6 + 20921866 ATGTCT------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2249776 9 +  4147112 ATGTCTGGT---
i caePb3.Scfld02_0      C 0 I 530
e caeJap4.Scaffold18142  145633 1383 -   343467 I

a score=-454.000000
s ce10.chrX             3916001 38 + 17718866 CA-----GCACCCTGAGAATGGTTTGGAAAATGGAAAAAAAAA
s cb4.chrX              9058831 34 + 21540570 -------GAGCGCCTTTTTTAG--AGTGGGATGGCATAGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962293 36 -  4500979 -------GTATCCTTATTATGGTTGGTGGAGTTGAAAACAAAA
i caeRem4.Crem_Contig0  C 0 I 274
s caeSp111.Scaffold630  5952962 40 + 20921866 -GCACTCAAATCCTTATTTAGA--AGAATGGTggatcagaaaa
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2249785 530 +  4147112 I
e caeJap4.Scaffold18142  145633 1383 -   343467 I

a score=1119.000000
s ce10.chrX             3916039 4 + 17718866 CAAA
s cb4.chrX              9058865 4 + 21540570 CAAA
i cb4.chrX              C 0 I 860
s caeSp111.Scaffold630  5953002 4 + 20921866 caaa
i caeSp111.Scaffold630  C 0 I 307
e caePb3.Scfld02_0      2249785 530 +  4147112 I
e caeJap4.Scaffold18142  145633 1383 -   343467 I
e caeRem4.Crem_Contig0   962329 274 -  4500979 I

a score=0.000000
s ce10.chrX             3916043 13867 + 17718866  
e caePb3.Scfld02_0      2249785   530 +  4147112 I
e caeJap4.Scaffold18142  145633  1383 -   343467 I
e cb4.chrX              9058869   860 + 21540570 I
e caeSp111.Scaffold630  5953006   307 + 20921866 I
e caeRem4.Crem_Contig0   962329   274 -  4500979 I

a score=604.000000
s ce10.chrX             3929910 4 + 17718866 ACTT
s cb4.chrX              9059729 4 + 21540570 ATTT
i cb4.chrX              I 860 C 0
s caeSp111.Scaffold630  5953313 4 + 20921866 ATTC
i caeSp111.Scaffold630  I 307 C 0
e caePb3.Scfld02_0      2249785 530 +  4147112 I
e caeJap4.Scaffold18142  145633 1383 -   343467 I
e caeRem4.Crem_Contig0   962329 274 -  4500979 I

a score=758.000000
s ce10.chrX             3929914 23 + 17718866 AGATCATGCGAGATTAAGCTGAC---------------
s cb4.chrX              9059733 24 + 21540570 ----------AGATTAAAT-GAC---TTTCCAAATGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962603 34 -  4500979 AGATCTTCTTAGATTAAGC-AAC---TTTCCAATTGTC
i caeRem4.Crem_Contig0  I 274 C 0
s caeSp111.Scaffold630  5953317 23 + 20921866 ----------AGATTAAGC-GACCCTCTTCCGAT----
i caeSp111.Scaffold630  C 0 I 1
e caePb3.Scfld02_0      2249785 530 +  4147112 I
e caeJap4.Scaffold18142  145633 1383 -   343467 I

a score=65519.000000
s ce10.chrX             3929937 325 + 17718866 GTTTTCT---AAAATCGAAAGTGTTGTTACTTTTC---ACGCCTTCAAAACT-----GCAACTCGTTTTTAACTGGTATTA--GCTTG-ATTGCAAACGA-----TTTGAGGTAGACATG--TGAATGCGGAAATACATCTCA------GATTTATGACGAGTTTAA---------AAAGGTTCG----TAACATTTC--------------GAATGGCATCTGCCATGGCAGAGCGAATGCAAAACACGATTC-TAGTACAC------ATTTTCAAC-----------------ATTCACTTC--ACACATTTTTTCGGCTGACACAAGCCATTACAGTCGGGGCA-----GG----------------------ATGGATTATTCGAC--ATTTGAAATGAGATGGGTCACATTTGGTTGACCTTCTGAA----AT
s cb4.chrX              9059757 378 + 21540570 ---TTATTCAGAAATCGAAAGTGTCATGTTGCTTC---ACTTCGTTGATCCCATCAAACAACTTATCGGCAACTGGTAGAAACGTCTAAA----------------GCGAGGTAAGACTCCCAAAATGCGGAAATTGATCTTCTCAAA-GAGATCTAATGAGATTATGAacgttttcaaacttttccagCAACCTTGACAT----------------TAATCTAACTGC-----AAGAAGCTAAAACTAGATTC-TAGTACAC--TTTTAATATGAACACACATGCATTATACTAGATTAGTTTCGCCGAATTTTCTTGAA-GACGTAAA-CATTACAAC---acga-----aggagaagaagaagaaggaggtgCTTGGATTATTCGACCGATTTGAAATTGGATGGGTCACATTCAGATgaccttctgaa---aat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   962637 363 -  4500979 ---TAAT--AGAAATCGAAAGTGCTATGTTTCTTC---CGACGGTTGATTTCGGCAAGCAACTTGTTGGCAACTGGTAGAGACACTCGCAT-GAAGAAAATAATGGGTGAGGTGAAAATACTTACGAACGGAAATAGATCTTTTAAGATGAGATCTAATAAGATTAT---Cgttcgaaaagtttt----caacttttatttc----------AGACGTAATCTAACTGC----AAAGCTACTGAAACTAGATTG-TAGTACTCTGTTTTGTCATGAAC------GCATTATAC--AATTagtttttcacacttttcttgACTGACACAAA-CATTACAAC---GTGA-----GG----------------------CTGGATTATTCGAC--ATTTCAAATGCGATGGGTCACATTTCGATGACCTTCTGAA---AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5953341 328 + 20921866 GTTTCAT---AAAATCGAAAGTGTTAATGTTCTCA---ACGCCGTTGATGCCAACAAACAACTTGTTGGCAACTGGTATAGAAGTTTTAATGGAAGCTGA-----GATGAGGTG--------AAAACGCGGAAATAGATCTTCT-----GATATGTAATGAGATTAT---CGTCTGAAAGGTTTC----TTGCATATCGTTTTCACGTT---------------ACTTT-----------TAAGAACCAGATTCTTAGGAAAC---TTTATTTCGAAC------CCATTATAA--AACTCATTC--ACACTATTCCTCGTCTGAAATATA-CATTACAAC---GTGA-----GG----------------------CTGGAtt-ttaaac--atttcaaaCGCGATGGGTCACATACGGATGACCTTCCGAA------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2250315 366 +  4147112 GTTTCAT---AAAATCGAAAGTGTTAATGTTCTTCTTTGCGTCGCTGATTTCAACAAACAACTTGTTGGCAACTGGTATATAGGCTTC-ATTGAAGCTGA----GGGCGaggtgaaaataa-aaaacgcgGAAATAGACCTTGG-----CAGATCTGATGAGATTAT---CGTCTGAAaggtttt----caacttttcgattcTGTAGTTTTAGATGTAATCCAACTTG-----------GTAAAACTAGATTC-TAGTACACT-TTTTAATATGAAC------GCATTATAC--AAGTAATTC--ACGCATTTTCTTGACAGACACAAA-CATTACAGC---GTAAAGTTTGG----------------------CTGGATTATTCGAC--ATTTGAAATGGGATGGGTCACATTCAGATGACCTTCTGAAATGACC
i caePb3.Scfld02_0      I 530 C 0
e caeJap4.Scaffold18142  145633 1383 -   343467 I

a score=141245.000000
s ce10.chrX             3930262 613 + 17718866  
s cb4.chrX              9060135 703 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   963000 647 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5953669 630 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2250681 653 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  147016 639 -   343467  
i caeJap4.Scaffold18142 I 1383 I 22

a score=3446.000000
s ce10.chrX             3930875 28 + 17718866 C-TTCTCTTCATTACTTCCTCCTATTATC
s cb4.chrX              9060838 27 + 21540570 TCTCATCGACACCTCCTT--CTTCTCATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   963647 22 -  4500979 T-TAATCGACACCTCC------CCTCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5954299 27 + 20921866 T-TTATCGAcacctctct-ttctctcatc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2251334 23 +  4147112 T-TTATCGACACCTC-----CCTCCTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  147655 22 -   343467 I

a score=24791.000000
s ce10.chrX             3930903 242 + 17718866 AAGTGAATTGCGCCAAGTGATAAGT------TGGTAATGATCAAGTTCTTCCAGTACTTTTCCC---------TTCTCTTCCGCTTTTCCT----------TTCTCCTCATTACCACTTTC---CTTTAATTTCAACTTCCTTTCCTACCTTGAAAACAAA-----------CCAATACAATTTG-AAAATTGTAACACTTTCAATCCTG---ATCACTGAAAA------------CTGAAAACTG-----------TTA----ACCTTC--CAAACCGGTAAGTAGGTGAAAGCTAGACACTAGGTATAAAAA
s cb4.chrX              9060865 213 + 21540570 -AGT--------CCAAGTGATAAGTTTTTCGTGGTAATGATCAAGTTCTTTCAGTACTTtctc---------------------------------------ccttctttttctcgttGTA-----TG----CCATTCTGCT----------------AAAAGTGCCAAATACCCATAAGCTTAGAAAAGTTGTAACATTATGGCCCTTCCTTTTTCCTGAATTGCCCTTTCTTTCCTGA--ACTG--------A--TTA----ACCTTTAAAAAACCGGTAGAATTGGCT------------GGGTATAAAAA
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   963669 253 -  4500979 -AGTGAA--ACGTTGAGTGATAAGT------TGGTAATGATCAAGTTCTTCCAGTACCTTTTCG---------GTGTCTATCGCCCTGTTT----CATgtctcatctttttcttcattccaaCACTTA----CCACTCCATTTGC--------ggtagaaagaaaaaaaaaccccatAAGCTTAG-AAAGTTGTAACATTCTCGCCCTTC----TTCCTGAAAAGCTTCATTATTACTGATTACTG--------AACTTA----ACCTTC-AGAAACCGgtaaactgaaacaaa---------aagtataaaag
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  5954326 237 + 20921866 -aGTGAA--ACGTTAAGTGATAAGT----------AATGATCAAGTTCTTCCAGTACTTTCCAACG-------GCAT--AATGCTTTTTCTCGc-ctccactttttct-tttctcactttc---cTTGGAATTCAATCTATTCCC--------GGAAGGAA-------ACCCCCCATCAGCTGta-aaagtt-----------tcttttc---tttcctgaAAC--TTCATTATCACTTATTACTG--------AACTTAAATTAACCTTCAAGAACCGGTAGGTTAAC-TGAA---------AAGTTTAAAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2251357 245 +  4147112 -TATGAA--ACGGCAAGTGATAAGT------TGGCAATGATCAAGTTCTTCCAGTACTTTTGGGCGCTTGTGATCATCAAgtgtctttttt----ctcaacttttcctctttctcacTTTC---CTTGGAATTCAATCCATTCCC--------GGAAAAAA-----------CCCATAAGCTTCG-AAAATtgtaacattttcttttttg---tttcccgaACC---------TCACTGATTACTA--------AACCTA----ACCTTTGAAAAACCGGTAGGTTACCTTAAA---------AAGTATAAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  147677 237 -   343467 AAGTGAA--ACGGATAATGATAAGT------TGGTGATGATCaagttctt----ttcttt-------------tcttccagtACTCCTCTTCCCACTTAACACTTACT-TTTCCCCTGCTA---TTCATTACTAAATTCTTTCCC-----------------------AGCGCTTATTAGCTTTTTAAAAGTGTAAAATT-------TTC---TTTCCTGAAAG--ATATACAAAAGTGATTACTGGCCTAATCACCTGA----AACCTTCACAAACCGGTAACTTATAGACAC---------CTttataaaag
i caeJap4.Scaffold18142 I 22 C 0

a score=-8563.000000
s ce10.chrX             3931145 24 + 17718866 GAA---------GATAC---ACTCCCCCCATCGAAT
s caeRem4.Crem_Contig0   963925 15 -  4500979 aaa---------gaaac---act-------gtga--
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5954563 18 + 20921866 AAG-AGT-----GACAT---TGT-------GTGa--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2251602 27 +  4147112 AAACAGTTTCGAGACACTCATCT-------GTGA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  147914  7 -   343467 -------------aaaa---act-------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9061078 26 + 21540570 I

a score=116865.000000
s ce10.chrX             3931169 543 + 17718866  
s cb4.chrX              9061104 580 + 21540570  
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   963940 557 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5954581 555 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2251629 537 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  147921 613 -   343467  
i caeJap4.Scaffold18142 C 0 I 56

a score=-2864.000000
s ce10.chrX             3931712 26 + 17718866 ATGAATTTGGATTAAATTTGGA--------------ACAA
s cb4.chrX              9061684 13 + 21540570 -TCAGTTCG---TAGA-----A------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   964497 18 -  4500979 -TCAGTTCG---TAGATTCGTA------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955136 10 + 20921866 -tcagtttg---tA--------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2252166 32 +  4147112 -TCAGTTCG---TATATTCGAAAATATCTacaacaa----
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18142  148534 56 -   343467 I

a score=-3429.000000
s ce10.chrX             3931738 23 + 17718866 AGAAGCTCAGAATGAATCCATGT
s cb4.chrX              9061697 18 + 21540570 --AAACTATCC---AATTCACgt
i cb4.chrX              C 0 I 50
s caeRem4.Crem_Contig0   964515 18 -  4500979 --AATCGCTAC---AATTCATTC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  5955146  5 + 20921866 -GAATC-----------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2252198 45 +  4147112 I
e caeJap4.Scaffold18142  148534 56 -   343467 I

a score=-775.000000
s ce10.chrX             3931761 37 + 17718866 GTACTAACTCTATTATATAGTATTGCGGTAAGTCGTC
s caeRem4.Crem_Contig0   964537 20 -  4500979 --------TCCTTTTTGCAGTCTT---------CTCC
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  5955151 24 + 20921866 gtaaaaaatctatttcacgttatt-------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2252198 45 +  4147112 I
e caeJap4.Scaffold18142  148534 56 -   343467 I
e cb4.chrX              9061715 50 + 21540570 I

a score=-1774.000000
s ce10.chrX             3931798 26 + 17718866 AGTTAAATATACCGTATTTTCCCATT
s caeRem4.Crem_Contig0   964557 14 -  4500979 AG--------GGCATTTATTCC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955175  9 + 20921866 -------------gttttttct----
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  148590 26 -   343467 agtaaaaaataacacattttgccatt
i caeJap4.Scaffold18142 I 56 I 138
e caePb3.Scfld02_0      2252198 45 +  4147112 I
e cb4.chrX              9061715 50 + 21540570 I

a score=-1976.000000
s ce10.chrX             3931824 22 + 17718866 CGAGATGCTTTCCCTCCTCCAC------
s caeRem4.Crem_Contig0   964571 28 -  4500979 AGCAGTACGTGTTCACTTCTAGTTCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955184 16 + 20921866 --------ttgcagaCTTCTCCTG----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2252198 45 +  4147112 I
e caeJap4.Scaffold18142  148616 138 -   343467 I
e cb4.chrX              9061715 50 + 21540570 I

a score=-6209.000000
s ce10.chrX             3931846 47 + 17718866 GTCTTATATCTCGAGTGTCTTAAATTTCATAAAAAAATTTTATTATC
s cb4.chrX              9061765 21 + 21540570 -------------GCCCTATAT--ATTC-----------TCATTATT
i cb4.chrX              I 50 C 0
s caeRem4.Crem_Contig0   964599 13 -  4500979 ----------------TTATA------------------TCTATATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955200 45 + 20921866 GGCTATTATTCCAGCTGTTTCC--ATTCAACTCAGGACCTTCTTATT
i caeSp111.Scaffold630  C 0 I 121
s caePb3.Scfld02_0      2252243 39 +  4147112 --------TTCCagctgttttctttttcaactcaggacttttctatt
i caePb3.Scfld02_0      I 45 I 8
e caeJap4.Scaffold18142  148616 138 -   343467 I

a score=-813.000000
s ce10.chrX             3931893 54 + 17718866 GTAA--TGTAGAGAATTAA-------A----AAAAAGAAATGTTGGAAGTA-TCTTGCCAGCTCTCAA
s cb4.chrX              9061786 56 + 21540570 TTAATCTGTAATGAACTAA------------ACATGAAAATGAATACAGTACTtcttttaagtttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   964612 67 -  4500979 CTAA-CTGTAATGAGCTAATACTGAAATcatatacaaaaatgaagttggcAATTTTACTTATTCATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2252290 59 +  4147112 gtaa-tGAGAATAAACTAG-------Agtgtaca-aaaaatgaaattaatacTTGTACTCAATTTAAT
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold18142  148616 138 -   343467 I
e caeSp111.Scaffold630  5955245 121 + 20921866 I

a score=-10629.000000
s ce10.chrX             3931947 60 + 17718866 ------AGTGG----------GGGTG-CAAGTCTTATACGAAAAA---------TACGGTAACATTGCCTTTTAAAAATTTTC--AAA
s cb4.chrX              9061842 51 + 21540570 ------tgtgGTGGTAAGCAGAAATGACCTGTGTTCT----TTAA---------CCAAAGAATG-----------CAATT-----A--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   964679 47 -  4500979 ------TGTGGT---------AAGTGACCAGtataag----aaaa---------tgagagaatg---------aataatttca--a--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2252349 47 +  4147112 ------TGCGGT---------GAGTGACCAGCATTGT----TTAG---------TTAGACAATA-----------TAACTTTGTTA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  148754 55 -   343467 ATTGGCGGTGGT---------AAGTAATCAGAAACAC----GAAAACCTAGAATTTAGAAAATA-----------TAAA---------
i caeJap4.Scaffold18142 I 138 C 0
e caeSp111.Scaffold630  5955245 121 + 20921866 I

a score=106115.000000
s ce10.chrX             3932007 170 + 17718866 TTTCCAGGTGATTTCCGCAGTACATCACTCAATGACACCACTAGAGTTGAAGCACTTTTTCGGAACAGAAAACAAAGACAAAGGTAGTGAAAA-------TATAGTG-AAATTTG-------TGAAAGCTA--------------CCACTTGA-GGCGG-----CTTGTCTGTCTCCCGTATTTGTAGTGACC----TTGTCTAATAGC-
s cb4.chrX              9061893 171 + 21540570 TTTTTAGGGGACTTCCGCAATACATCACTCGATGACACCACTCGAATTGAAGCACTTTTTCGGAACTGAAAACAAAGGCAAAGgtaatgaaaaaagaaatttcaatg-aaactTT---CATTT----------------------CCACTTGACGGATT------GCTTGTGTCTGCCA--TTTTTAGTGACC----TTGTCTAGAAGC-
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   964726 187 -  4500979 ttttcaggtgaCTTCCGCAATTCATCACTTGATGACACCACTTGAATTGAAGCACTATTTCGgaaccgaaaacaaagacaaaggtaacaaaaaa------ttcagtgaaaacgag---cgactgaaaaccga----aaaaaaa--ccacTTGA-GGCTT------TCTCCTGTCTGCCAATTTTGTAGTGACCTTCGTTGTCTAATAGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955366 189 + 20921866 tttccaGGTGACTTCCGCGATTCATCACTCTATGACACCACTTGAGTTGAAGCATTTTTTCGGAACCgaaaacaaagacaaaggtaacaaaaag------tagaatgaaaaccaa---cgactaaaaactaaaatgaaaaaaaggccACTTAA-AGCTT------TCTCCTGTCTATCAAATTTGTAGTGACC----TTGTCTAATAGC-
i caeSp111.Scaffold630  I 121 C 0
s caePb3.Scfld02_0      2252396 196 +  4147112 TTTCCAGGTGGCTTCCGCAATTCATCACTCAATGACACCACTTGAGTTGAAGCATTTCTTCGGAACTGAAAACAAAGGCAAAGGTAACAAAAAG------TGTAGTGAAAACCACGGTCGACTAAAAActaaattgaagaaaa--ccaCTTGA-GGCTTTTCTCCTTTCTTGTCTACCAATTCCGTAGTGACC----TTGTCTAATAGT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  148809 182 -   343467 CTTTCAGACAACTTCCGCACTTCACCATTCAATGACACCACTTGAGTTGAAGCAtttttttGGAACGGAAAACAAGAACAACAGT------AAG------TATggtgaaaaaagg--------gaaaagtcTCATAAACAAAA--GTACTTCA-Agcgt-ttcttttcttttttttcttttcttttcctctcc----GTTTCTACTGAGT
i caeJap4.Scaffold18142 C 0 C 0

a score=-6310.000000
s ce10.chrX             3932177 50 + 17718866 CTTACCACATTAATAGTAAAAGGGAAACC-GTCTGGCCGAAGATTGTGGCA
s caeRem4.Crem_Contig0   964913 50 -  4500979 CTTACCAAATTATAGGTGGGAGAGAAACT-GTCTGGCTAAGGATCAAATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955555 36 + 20921866 ---ACTTGA--AATGAAGCAGAACAAACT----T------GGATCATTCCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2252592 39 +  4147112 ---Cttaaa--aagtgtttcaaataAACT-GTCT------GGATCAATGCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  148991 46 -   343467 ATCTTCGGGTTAATAGCTTTTAGGACGTTTGTCTAGACA-AGATTAC----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9062064 31 + 21540570 I

a score=199238.000000
s ce10.chrX             3932227 338 + 17718866 CTCAAATATTT----ACTTTTTTCTATGCTATTATCCTTAATGTTCTTCCAGTTCCTGTATACTTTTTGGACGACAACAAAAAACACAGACGGCATGT---T---GATGATGGATTCAAAATGGATTTCCTTATCGATGGAGTCATGGAGACGTTCGTGTTGCGCAATAAACCGCATCTGTTCTCTGAAGGTTTGC--TTTTCCCCCCCTGTAGTCTTTGCGGCGCCA---------TTGTCATGCTTG-----TTAATCAGGATTGTCAGAGAGATTAGAGCG-----TTTCGTTATGATAGCAGATAATAGACTATCTAAAC-GATGGT--GATAGGGTTA-----AAAAC---------TTTAATGTTCGGGAAATTTGGAAC
s cb4.chrX              9062095 336 + 21540570 caaaaatattttttggcatttaTCTTTCCCacaatccaaaa-----ttccagttCCGGACTACTTCTTGGATGGGCATAAAAAACAAAGATTGGATAT---T---GATGATAGCTTCAAAATGGATTTTCTTATTGATGGAGTCATGGAGACGTTCGTGTTACGCAACAAACCGCATCTGTTCTCCGAAGGTTTGCCTTTT--------TGTAGCCTTCTTGGCGCCATTAATC-TTTTGTCATGCTTC------AAAGCAGGATTTTCTTTGCGATTAGAACG-----CTTTGTTATCATAGCAGATAATCGACAATCAAAAC-GCTTTG--ATTGgggtga-----aaaaaaacggaacgAT---CGTTCGAGAAA--------
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   964963 314 -  4500979 CTCAAACATtt----acatttgt-----------------------tttcagttccGAAATACTTCTTGGATGGCAACAAAAAACACAGACTGGATGT---TTTCGATGATGAATTCAAAATGGATTTTCTTATCGATGGAGTTATGGAGACGTTCGTGTTACGCAATAAACCGCATCTGTTCTCCGAAGGTTTGC--TTT--------TGTAGCCTTTGCGGCGCCATGAATC-TTTTGTCATGCATC-----TTAAGCAGGattatttttgagattagAACA-----TTTTGTTATGATAGCAGATCAGCGATAATCAAAAC-GTTTGG--GTTGAGGTTT-----AAAAA---------GT---CGTTCGGGAAATCAGGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5955591 313 + 20921866 CTCAAATATTT----ACGACTTG-----------------------TTTCAGTTCCGGAATACTTCTTGgatgaaaggaaaaaacacATATTGGATAT---A---CACAATGGTTTCAAAATGGATTTCCTTATCGATGGAGTCATGGAGACGTTCGTGTTGCGTAATAAACCGCATCTGTTCTCCGAAGGTTCGC--TTT--------CCTAGCCTTTCTGGCGCCATGAATC-TTTTGTCATGCGTA-----TCAATCAGGATTATCTTTGAGATTAGAACA-----TTCTGTTATGATAGTAGATAAGGGGCTATCAAATC-ACCTGG--GTTGAGGTGAT----AAAAA---------GT---TGTTCGGGAAATCAGGAAC
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_0      2252631 317 +  4147112 CTCAATTATTT----ACAAAATG-----------------------TTTCAGTACCGGAATACTTCTTGGAtggcaacaaaaaacacagattggatattgat---gatgatggtttcAAAATGGATTTTCTTATCGATGGAGTTATGGAGACGTTCGTGTTACGCAACAAACCGCATCTGTTCTCCGAAGGTTTGC--TTT--------TGTAGTCTCACTGGCGCCATGAATCTTTTTGCCATGCGTG-----TTAAGCAGGATTGTTTAGGAGATTAGAACG-----CTTTGTTATGATAGTGGTGGAGTGGTGATTATATTAAACTGG--GGTGAGGTGA-----AAAAA---------GT---GGTTCGGGAAATCAGGAAC
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18142  149037 303 -   343467 --TAAATACtt----ccaaatttcatttt-----------------tttcagttccTAAATATTTCCTTGATAATGTGGAGAAAAGCCGAACGGAGAT---G---GAGAACGGATTCAAAGTGGACTTTCTTATCGATGGAGTCATGGAGACGTTCGTGTTGCGCAACAAACCGCATCTGTTTTCCGAAGGTTTGC----------------AGTCTCATCGGCGCCGTGTAGA-TTTTATCATGCTTGTCAAGTCAAGCAGGAAT-TGATAAGGATTAGAACGTTTTCTTTTGCtttaatggcaaaaaa---------aaaac-ggctggCTGGCAAAGTGATgatcgaaaa---------tt----------gaaat-------
i caeJap4.Scaffold18142 C 0 C 0

a score=-1939.000000
s ce10.chrX             3932565 16 + 17718866 -CGAACAGTGTTCAAAC
s caeRem4.Crem_Contig0   965277 16 -  4500979 -CGTCTACATTAATGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  149340 10 -   343467 ttgttcaatt-------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2252948 16 +  4147112 I
e cb4.chrX              9062431  0 + 21540570 C
e caeSp111.Scaffold630  5955904 24 + 20921866 I

a score=-1539.000000
s ce10.chrX             3932581 10 + 17718866 CCATTTGATT
s cb4.chrX              9062431  5 + 21540570 -----CGTCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   965293  9 -  4500979 -CCATTTTCT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2252964 10 +  4147112 TCATTTCTCT
i caePb3.Scfld02_0      I 16 I 1
s caeJap4.Scaffold18142  149350  7 -   343467 ---tttgata
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5955904 24 + 20921866 I

a score=556115.000000
s ce10.chrX             3932591  953 + 17718866  
s cb4.chrX              9062437  928 + 21540570  
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0   965303  971 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 3
s caeSp111.Scaffold630  5955928  968 + 20921866  
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      2252975  960 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  149357 1044 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-3548.000000
s ce10.chrX             3933544 10 + 17718866 GCTAATTATC-----
s cb4.chrX              9063366 10 + 21540570 TCAAATAATT-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   966277  9 -  4500979 ttaaa-aatc-----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5956896  3 + 20921866 -------ATT-----
i caeSp111.Scaffold630  C 0 I 4
s caeJap4.Scaffold18142  150401 10 -   343467 -----GTATTTGCTT
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2253935  0 +  4147112 C

a score=-1462.000000
s ce10.chrX             3933554 8 + 17718866 -AGAATTTA
s caeRem4.Crem_Contig0   966286 8 -  4500979 -aaaatgtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5956903 7 + 20921866 --AGATTTT
i caeSp111.Scaffold630  I 4 I 24
s caeJap4.Scaffold18142  150411 8 -   343467 GTAAatgg-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2253935 0 +  4147112 C
e cb4.chrX              9063376 0 + 21540570 C

a score=1217.000000
s ce10.chrX             3933562 22 + 17718866 CTTCGTCGTACTTAAAAAATTT
s caeRem4.Crem_Contig0   966294 22 -  4500979 ttacgACATATGgagtgaattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  150419 22 -   343467 tttcattttttttaaataattt
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2253935  0 +  4147112 C
e cb4.chrX              9063376  0 + 21540570 C
e caeSp111.Scaffold630  5956910 24 + 20921866 I

a score=0.000000
s ce10.chrX             3933584 402 + 17718866 CAATCGTACATAGTACCGTAATACTCGTGTGAAAATTATTTGAGGCAGCTTCTATAGTGCTAAAATACTTAAATATCGTTCAAAAAAGCTCCAAAAGTTGTTTGTAATTAATTTCAAAATTTACTATCGCCAGCATATTTATAACCCTAAAAATTTACAAAAATATTACACTCTCATTATCTTCTAATATCCATTACTTATTTAAACGTCGAGGGATCTTGTAATTGTGCTCGAAATATTCAAAAAATTGTTTTTTTTTTAATCTTGGTAACTTATCAACATTTATTCAAAGAATTCGAAAACATTAAACAATTTTTGTAGCGTTTTTTTGTGATACTTAGTTACGTTGGCATAGGTGTGAAAGTATTAATATTTTGAATATAACTTTTATGGAAGATGTTT
e caePb3.Scfld02_0      2253935   0 +  4147112 C
e caeJap4.Scaffold18142  150441   0 -   343467 C
e cb4.chrX              9063376   0 + 21540570 C
e caeSp111.Scaffold630  5956910  24 + 20921866 I
e caeRem4.Crem_Contig0   966316   0 -  4500979 C

a score=114.000000
s ce10.chrX             3933986 7 + 17718866 TTATGTG
s caePb3.Scfld02_0      2253935 7 +  4147112 TTCTGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  150441 0 -   343467 C
e cb4.chrX              9063376 0 + 21540570 C
e caeSp111.Scaffold630  5956910 24 + 20921866 I
e caeRem4.Crem_Contig0   966316 0 -  4500979 C

a score=-2573.000000
s ce10.chrX             3933993 30 + 17718866 TACGAAAAACTAGATAAACCTTTCATATCA----------
s cb4.chrX              9063376 30 + 21540570 TGTAAaagtct---tgaaaatttttag--aggtTT-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2253942 32 +  4147112 --TAAGAA------CGGACTTTTCCAGTAAAGTTTTGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  150441  0 -   343467 C
e caeSp111.Scaffold630  5956910 24 + 20921866 I
e caeRem4.Crem_Contig0   966316  0 -  4500979 C

a score=90801.000000
s ce10.chrX             3934023 95 + 17718866 CAGATTGATGTTCTCTACACCCAAAGACTTCTTCAACCCAGAATCAACATCAAAATTGTCAGATATGAAATCCTGAAAAATATTCCAGTAAGTTC
s cb4.chrX              9063406 95 + 21540570 CAGATCGACGTACTTTATACTCAACGACTACTGCAGCCAAGAATCAATATCAAAATTGTCagatatgaaattttgaaaaatattccggtttGTTA
i cb4.chrX              C 0 I 496
s caeRem4.Crem_Contig0   966316 95 -  4500979 cagattgatgtGCTTTACACTCAAAGATTGCTTCAACCAAGGATAAATATCAAAATCGTTAGatatgagattttgaaaaatataccggtgagtgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5956934 95 + 20921866 cagattgatgTGCTCTACACTCAACGACTTCTTCAACCAAGAATTAACATCAAGATAGTCAGAtacgaaattttgaaaaatattcctGTAAGTTC
i caeSp111.Scaffold630  I 24 I 4
s caePb3.Scfld02_0      2253974 95 +  4147112 CAGATTGATGTTCTGTACACTCAAAGACTTCTTCAACCCAGAATTGGTATCAAAATTGTGAGATATGAGATTCTCAAGAACATTCCCGTAAGCTT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  150441 95 -   343467 tagaTCGACGTCCTCTACACTCAACGACTTCTTCAACCAAGAATCAACATCAAAATTGTTCGGTACGAGATCCTGAAAAATATTCCTGTAAGTTG
i caeJap4.Scaffold18142 C 0 C 0

a score=343860.000000
s ce10.chrX             3934118 541 + 17718866  
s cb4.chrX              9063997 535 + 21540570  
i cb4.chrX              I 496 C 0
s caeRem4.Crem_Contig0   966411 495 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5957033 528 + 20921866  
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2254071 538 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  150536 652 -   343467  
i caeJap4.Scaffold18142 C 0 I 58

a score=-22476.000000
s ce10.chrX             3934659 121 + 17718866 TTGTTTTTTGAGTTATGTAATTCATTTTAAAAAAAACCAGTAATTAGTCGTATTGGCACAAGGCAGAAAAAAACTAAATTACGGTGAAATAAGATACATTTTTGTAACTGGTTTGAAGTAA
s cb4.chrX              9064532  38 + 21540570 -----------------------atctggaaaa---------------------------------------------tt------gtaaaaaagtattttatgAAT----TCTGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   966906  39 -  4500979 --------------------------TCGTTCA---------------------------------------------TTA----GATAcaatatttttcactgaaa----attgaaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5957561  36 + 20921866 -----------------------ATGTtgaata-----------------------------------------------------aaatcaaattcatttatgaaa------tgaga---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2254609  36 +  4147112 ---------AGGTCACACAA---ATGTTGAGCa-----------------------------------------------------ggtttcaattatttt--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  151188  58 -   343467 I

a score=432553.000000
s ce10.chrX             3934780 548 + 17718866  
s cb4.chrX              9064570 503 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   966945 592 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5957597 582 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2254645 571 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  151246 557 -   343467  
i caeJap4.Scaffold18142 I 58 I 34

a score=911.000000
s ce10.chrX             3935328 9 + 17718866 AAAGAGAAT
s cb4.chrX              9065073 9 + 21540570 TGGacgatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   967537 9 -  4500979 TAACAAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958179 9 + 20921866 TTGGCGAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2255216 9 +  4147112 TTGGCGAAT
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18142  151803 34 -   343467 I

a score=1645.000000
s ce10.chrX             3935337 8 + 17718866 TTCATGCA
s cb4.chrX              9065082 8 + 21540570 ttcaaaga
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   967546 8 -  4500979 TTTAAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958188 8 + 20921866 TGTAAAGA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2255225 28 +  4147112 I
e caeJap4.Scaffold18142  151803 34 -   343467 I

a score=-2259.000000
s ce10.chrX             3935345 15 + 17718866 TTTTCCATCAATTTT------
s caeRem4.Crem_Contig0   967554 20 -  4500979 -TCCCTAAAACTAACAACATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958196 16 + 20921866 ----TCATACATTACAGAAT-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2255225 28 +  4147112 I
e caeJap4.Scaffold18142  151803 34 -   343467 I
e cb4.chrX              9065090 20 + 21540570 I

a score=517.000000
s ce10.chrX             3935360 1 + 17718866 -T
s cb4.chrX              9065110 1 + 21540570 -T
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   967574 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958212 2 + 20921866 AT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2255225 28 +  4147112 I
e caeJap4.Scaffold18142  151803 34 -   343467 I

a score=91.000000
s ce10.chrX             3935361 1 + 17718866 T
s caeJap4.Scaffold18142  151837 1 -   343467 T
i caeJap4.Scaffold18142 I 34 C 0
e caePb3.Scfld02_0      2255225 28 +  4147112 I
e cb4.chrX              9065111 0 + 21540570 C
e caeSp111.Scaffold630  5958214 0 + 20921866 C
e caeRem4.Crem_Contig0   967576 0 -  4500979 C

a score=77117.000000
s ce10.chrX             3935362 77 + 17718866 TCTT-CAGTTCCAACAATGGAGGCGCACCATGTCAAGGTGATGAGGCGCGTGGAATGGTTTGTCATAGAGATGTAAGT
s cb4.chrX              9065111 78 + 21540570 CGTTGTAGTTCGAATAATGGAGGAGCGCCGTGTCAAGGAGATGAAGCTCGTGGAATGGTTTGTCATAGAGacgtaagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   967576 77 -  4500979 TATT-CAGTTCAAATAATGGAGGGGCACCATGTCAAGGCGACGAGGCTCGTGGAATGGTTTGTCATAGAGATGTAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958214 77 + 20921866 ATTT-TAGTTCGAATAACGGAGGAGCCCCATGCCAAGGAGATGAAGCACGTGGAATGGTTTGTCACAGAGATGTGAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2255253 77 +  4147112 TGTT-CAGTTCTAACAACGGTGGAGCCCCATGTCAAGGTGATGAAGCACGTGGTATGGTTTGCCATAGGGATGTAAGT
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18142  151838 77 -   343467 TTTG-TAGTACAAATAATGGAGGAGCCCCGTGCCAAGGGGATGAAGCGCGTGGAATGGTGTGCCATAGAGATGtgagt
i caeJap4.Scaffold18142 C 0 C 0

a score=-55946.000000
s ce10.chrX             3935439 160 + 17718866 GAAATTTGAATACTGAAATGTAGACTGCGGCACACGGGGAACTGATTAGT---------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAATAAAATGACCAAATATATATTAATAAAACGGTTGAAAAAAGTTTCGGATCAATAAGTGTTGGAAAGTTTTTGTGTACCACTGATC------AAAGAATCT---------------------------AAAGCACTG
s cb4.chrX              9065189 323 + 21540570 tttttttgaacagtGAAACACCA--TTCAGCTTATTTGATGTTTATTGATCAGTAGATAATGCTTTGAACAGGTTTTGTTAGAGTCACAGAAAggtcagaaaatcgaaaaattttcagtcatgaTTTTTTACCATGTCTACTGTTTTCAGTAGTTTGGAcctcgactgtcaagtttcctaTCACTTCCTAAAATTCGAGGGGTATAAAACGGGCATacataaatt--------------gaaaacttgtgAACACAgaacttttagaaaatttct-tctggccttgTTTTTACTGAAAGcgtaaaaaattaaatatctttcagaaattggcaaagaGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   967653   9 -  4500979 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCGTCA------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5958291   2 + 20921866 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2255330   9 +  4147112 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATACAG------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  151915   0 -   343467 C

a score=613823.000000
s ce10.chrX             3935599 1308 + 17718866  
s cb4.chrX              9065512 1365 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   967662 1277 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold630  5958293 1272 + 20921866  
i caeSp111.Scaffold630  C 0 I 35
s caePb3.Scfld02_0      2255339 1317 +  4147112  
i caePb3.Scfld02_0      C 0 I 41
s caeJap4.Scaffold18142  151915 1164 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-215.000000
s ce10.chrX             3936907 24 + 17718866 ACTGT-----GAATATTTTTGCATTTAAA
s caeJap4.Scaffold18142  153079 29 -   343467 AAAATAATTGGAATTCAACTGCGCTTACA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2256656 41 +  4147112 I
e cb4.chrX              9066877  0 + 21540570 C
e caeSp111.Scaffold630  5959565 35 + 20921866 I
e caeRem4.Crem_Contig0   968939 37 -  4500979 I

a score=98.000000
s ce10.chrX             3936931 18 + 17718866 AATTTGAAAATTAAATCA
s cb4.chrX              9066877 10 + 21540570 ------AAaaacaaat--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18142  153108 18 -   343467 TATTTAAtaattaattga
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2256656 41 +  4147112 I
e caeSp111.Scaffold630  5959565 35 + 20921866 I
e caeRem4.Crem_Contig0   968939 37 -  4500979 I

a score=453.000000
s ce10.chrX             3936949 75 + 17718866 AAATCTAAAATTGAAAAAAAAACTCCAAGTTTCGGACAGAATCTAGTCCATTATGGACATTGCGTAGGTGTTATA
s cb4.chrX              9066887 52 + 21540570 -------aatttgaaagGGGAACT--AAGG---AAACAGTTTCTAG-----------CACTGCGTAGCAACTACA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2256656 41 +  4147112 I
e caeJap4.Scaffold18142  153126  0 -   343467 C
e caeSp111.Scaffold630  5959565 35 + 20921866 I
e caeRem4.Crem_Contig0   968939 37 -  4500979 I

a score=0.000000
s ce10.chrX             3937024 291 + 17718866 AAACAACTATACTATTCGTCAAAAATTGGCTCGCAAAACGTCCGTCGCTTCAATTTTTCCAACGCCAACAGAGAACTTTAAAAAACTAGAAAATTAGCGGAAAATTTCTGTTATAAACTTGAGAGTCAACTAGTATATAATAAATTAAACCATTCGGGAATATAAAAACATACTTCAAATTACGAACAAAACTATTCCGGAACACTGTTTTTATTCAAACAAATGCACACTTATGGTGTCTGTTAGTAACTTTATTTCAATTTACTAAATTGAAACTTCAAGCATCAAAAC
e caePb3.Scfld02_0      2256656  41 +  4147112 I
e caeJap4.Scaffold18142  153126   0 -   343467 C
e cb4.chrX              9066939   0 + 21540570 C
e caeSp111.Scaffold630  5959565  35 + 20921866 I
e caeRem4.Crem_Contig0   968939  37 -  4500979 I

a score=60.000000
s ce10.chrX             3937315 2 + 17718866 AC
s caeJap4.Scaffold18142  153126 2 -   343467 at
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2256656 41 +  4147112 I
e cb4.chrX              9066939 0 + 21540570 C
e caeSp111.Scaffold630  5959565 35 + 20921866 I
e caeRem4.Crem_Contig0   968939 37 -  4500979 I

a score=546.000000
s ce10.chrX             3937317 1 + 17718866 T
s caeRem4.Crem_Contig0   968976 1 -  4500979 T
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold630  5959600 1 + 20921866 T
i caeSp111.Scaffold630  I 35 C 0
s caeJap4.Scaffold18142  153128 1 -   343467 t
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2256656 41 +  4147112 I
e cb4.chrX              9066939 0 + 21540570 C

a score=8319.000000
s ce10.chrX             3937318 20 + 17718866 TTCAGAGATGCTCCGAAACC
s caeRem4.Crem_Contig0   968977 20 -  4500979 TTTAGCGGTGCCCTACTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5959601 20 + 20921866 TTCAGAGATGTCCTCAAACC
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2256697 20 +  4147112 TTTAGAGATGCTCTGCAACT
i caePb3.Scfld02_0      I 41 I 3
s caeJap4.Scaffold18142  153129 20 -   343467 ttcaggAGTGCCCTGTAACC
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9066939  0 + 21540570 C

a score=102155.000000
s ce10.chrX             3937338 139 + 17718866 ACAACAC---GTAGACCACTTGTAAATAGATCTGGTCTTTGGACGGGATGGTCGTCCTGGTCCTCTTGCAGCACAAAGTGTGGTATTGGACAACGAACAAGGAGGAGAAGGTGTTATCAAGGATCTTGCTTGGGTTTGTAAA
s cb4.chrX              9066939 139 + 21540570 ACAACAC---AAAGACCATTGGTGAATAGGTCCGGTTTGTGGACAGGGTGGTCGAATTGGTCAGCATGTAGCACGAAATGTGGTGTTGGACAAAGAACCAGAAGGAGGAGGTGTTATCAAGGATTTTGCATGGGTAGGTAAA
i cb4.chrX              C 0 I 409
s caeRem4.Crem_Contig0   968997 139 -  4500979 ACTACAC---AACGACCGTTTATTAACCGATCAGGTCTCTGGACAGGTTGGTCATCATGGTCAGCATGCAGTACAAAATGTGGTGTTGGACAGCGCACTAGGAGGAGGAGATGTTACCAAGGATCATGCTTGGGTAAGAGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5959624 135 + 20921866 ACAACAG---AAAGACCTTTAATCAACAGGTCTGGTCTCTGGACAGGCTGGTCATCCTGGTCAGCATGTAGCACAAAATGTGGAGTAGGACAGCGCACAAGAAGGAGGAGGTGCTATCAAGGATCCTGCATGGGTTAG----
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2256720 138 +  4147112 ACTACCACTCAAAGACCATTAGTTAACAGATCCGGTTTATGGACTGGTTGGTCTAACTGGTCCGCATGTAGCACGAAATGCGGTGTTGGACAACGTACtaggaggaggaggtgttATCAGGGATCTTGCATGGGTTTG----
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142  153149 139 -   343467 ACAACTT---TGCAAACGCTGGTAAACCGATCTGGCCTGTGGACGGGATGGTCAGCGTGGTCAGCCTGCAGTACCAAATGTGGAAATGGGCATCGGACTAGAAGGAGAAGATGCTATCAGGGCCAGTGTATAggtttgtttc
i caeJap4.Scaffold18142 C 0 C 0

a score=-7130.000000
s ce10.chrX             3937477 17 + 17718866 -TTTCCACTCTTT--TTTGC
s cb4.chrX              9067487 19 + 21540570 -tttccCAAATCGCTTTTGT
i cb4.chrX              I 409 C 0
s caeRem4.Crem_Contig0   969136  8 -  4500979 ------------ACATTTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5959759  3 + 20921866 ---------------TTT--
i caeSp111.Scaffold630  C 0 I 30
s caePb3.Scfld02_0      2256858  5 +  4147112 ---------------TTTGC
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18142  153288 14 -   343467 ttttctctt------tttat
i caeJap4.Scaffold18142 C 0 C 0

a score=-13120.000000
s ce10.chrX             3937494 39 + 17718866 T-------------------TTACTTTCAAATTTTTTTTTGCAC--------AGCTTGACATTCAC
s cb4.chrX              9067506 36 + 21540570 TAT--------CCTTCCCTATTGGTTTCAAATGTCCCATAACGT----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   969144 22 -  4500979 T-------------------TTGATT--GAATACCTCATTAT-T----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2256875 40 +  4147112 ------------CTAACTCAACAATTCCGAGTTCCCCATTCTCTAAGTACTT--------------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18142  153302 42 -   343467 --tatattttctctctctctctcactctaATTTCCCATTTATCC----------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5959762 30 + 20921866 I

a score=150540.000000
s ce10.chrX             3937533 301 + 17718866 ATTTCCAGGTGACGATAATGAGAAAGAAAGATGCATTGGTTCTCAGTGCTGATGCA-------------------CATCACAACGTGTC----CAAAGAAACACACACAGAGAG-------CCATCAGTTTTTCAATCGAAACCACATGCTGTCTCAGTAGAACGAAC-------------------GAGAAGAAGAGATTTGAAATTTAAAATTC-AAAATTAGTAGCAGA-CTTTATAGATGT--------------------------------------------AATGCTCTTTTTTTTCTCGTTCCCTGTG--------TACTTTCAACGCTTTTATAATTGTTTTAAACTAGACATTCTCA-------GCGGGTCTCTC-T-------TTTTTGTTTA-------------------------------TACAAGATGTCATC
s cb4.chrX              9067542 373 + 21540570 TTCTTCAGGTGACGATAATGAGAAAGAGCGATGTGTTGGGTCGCACTGCTGATGCT--------------------------GGAGTTTCtctcaggaaaaa----aaaataacga-----cCATCAGTTTTTC-ATCGAAACCACATGCTGTCTCCGATGAACGAAcgcaaaaaatcagagaaaaaagaaaagagaga---gaaattcgaaattc-aaaattagtagCAGATTTTTATAGATGTCGCATTACCCTATCTCTTTCTCTTTGTGTATGTctgtttttttgtcttctccCCATCATCTCGTTCC-CTTcctctagatttttttcaacgctTTTATAATTGTTTTAAgccatccatttttt----ttcgcgGGTCCTtc-tttcctaatttttttgta-------------------------------tacaTGATGTCCTC
i cb4.chrX              C 0 I 277
s caeRem4.Crem_Contig0   969166 338 -  4500979 ATTTACAGGTGACGATAATGAGAGAGAAGGCTGCGTAGGAGCTCAATGTTGATGCTCCCATTCAAACTCCCATCACATCACAATatatcttttcaaaaaacc----agagagaggaagagtccatcagtttttc-attgaaaccaCATGCCGTCTCAGAGGAACGAacg------------------aaaaacgagagatttgaaatttgaaattcaaaaattagtagCAGA-TTTTATAGACGTTGTAttgctct---------------------------------tctcttttctaatATCTTGTTC--------------TTCTCTCAACGCttttataattgttttaaGGCAGCCATTATTT-------GCGGGtccgtt-tcttct--tttctgttta-------------------------------TACAAGATGTCGTA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  5959792 332 + 20921866 ACTTCCAGGTGACGAtaatgagaaagaaagatgCGTTGGGTCTCAGTGCTGATGCT-------CAGCTCACATCACATCAAAATGTgtc----caaaaaacca-agagagagag-------ccatcagtttttc-atcgaaacCACATGCTGTCTCAGAGGAACgaac-------------------gaaaaagagagatttgaaatttaaaattcaaaaattagtaGCAGA-TTTTATAGTTGTTGCattgcatt---------------------------------tttcttcttgttcttcttgttcctcactctctctcttcctctcatCGCTTTTATAATTGTTTTAAGTCAGCCATTCTCA-------GCGGGTCCTTCGT-------TTTCTGTTTA-------------------------------TATAAGATTTCTTA
i caeSp111.Scaffold630  I 30 C 0
s caePb3.Scfld02_0      2256915 327 +  4147112 ACTTCCAGGTGACGATAATGAGAAAGAAAGATGCGTTGGGTCTCAATGCTGATGCA-------GAGCTCACATCGCATCAAAATGTGTC----CAAAAAACC----AGAGAGAG-------CCATCAGTTTTTC-ATCGAAACCACATGCTGTCTCGGAggaacgaaca----------------aaaaaaaagagagatttgaaatttaaaattc-aaaattagtagcaga-ttttatagtttttgtattgca-----------------------------------tttcctctttttttgcttgttcttcttgttct-tcctCCTCTCATTGCTTTTATAATTGTTTTAAGCCAGCCATTCTCA-------GCGGGtccgtt-t-------tttctgttta-------------------------------tacAAGATGTCGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  153344 315 -   343467 ACATTAAGGTGATCCTAATGAAACGGACAGATGTGTTGGTTCTCAGTGCTGATTCT-------------------TGTGTGCACGGATC----ACAAAAACC---------GGC-------TCATT-GATTTTC-ATCGAAACCACATGTTGTC------GAACAATAA------------------gagaatgaagaa---aaaatgcaattttt-aaaattagttGCACA-TTTTGTAGACAA---ATTGCTATTT-------------------------------TTTCCGCTATGTATCCGTGTTG---------------------------TCCAGAttttttataagctagccattttttattctttgcgggtttcgt-ttttc---tttttgcttacaattagttaagtttttttttgtattttctgtACAGGATGTCACC
i caeJap4.Scaffold18142 C 0 C 0

a score=4374.000000
s ce10.chrX             3937834 11 + 17718866 GTACATCTATT
s caeRem4.Crem_Contig0   969509 11 -  4500979 GTACATgtatt
i caeRem4.Crem_Contig0  I 5 I 647
s caeSp111.Scaffold630  5960124 11 + 20921866 GTAcattaatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2257242 11 +  4147112 GTacataaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  153659 11 -   343467 AGACGTCGTTt
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9067915 277 + 21540570 I

a score=2568.000000
s ce10.chrX             3937845 18 + 17718866 --------GCATATT----------------ACACTAATAAA
s caeSp111.Scaffold630  5960135 22 + 20921866 --------tcttttt------------gtacgtactaataaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2257253 22 +  4147112 --------tcatttt------------gtgcGTACTAATAAA
i caePb3.Scfld02_0      C 0 I 218
s caeJap4.Scaffold18142  153670 42 -   343467 atatatgttttttttcattgtgttCATGTGTACATTaataaa
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9067915 277 + 21540570 I
e caeRem4.Crem_Contig0   969520 647 -  4500979 I

a score=-315.000000
s ce10.chrX             3937863 7 + 17718866 ACATTCA
s caeSp111.Scaffold630  5960157 7 + 20921866 attttca
i caeSp111.Scaffold630  C 0 I 161
s caeJap4.Scaffold18142  153712 5 -   343467 -aattc-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2257275 218 +  4147112 I
e cb4.chrX              9067915 277 + 21540570 I
e caeRem4.Crem_Contig0   969520 647 -  4500979 I

a score=679.000000
s ce10.chrX             3937870 17 + 17718866 AGTTTTTAAGTCTTTAT
s caeJap4.Scaffold18142  153717 17 -   343467 agttttaatATTTTGAT
i caeJap4.Scaffold18142 C 0 I 594
e caePb3.Scfld02_0      2257275 218 +  4147112 I
e cb4.chrX              9067915 277 + 21540570 I
e caeSp111.Scaffold630  5960164 161 + 20921866 I
e caeRem4.Crem_Contig0   969520 647 -  4500979 I

a score=0.000000
s ce10.chrX             3937887 1073 + 17718866  
e caePb3.Scfld02_0      2257275  218 +  4147112 I
e caeJap4.Scaffold18142  153734  594 -   343467 I
e cb4.chrX              9067915  277 + 21540570 I
e caeSp111.Scaffold630  5960164  161 + 20921866 I
e caeRem4.Crem_Contig0   969520  647 -  4500979 I

a score=120.000000
s ce10.chrX             3938960 4 + 17718866 AATC
s caeSp111.Scaffold630  5960325 4 + 20921866 AACT
i caeSp111.Scaffold630  I 161 C 0
e caePb3.Scfld02_0      2257275 218 +  4147112 I
e caeJap4.Scaffold18142  153734 594 -   343467 I
e cb4.chrX              9067915 277 + 21540570 I
e caeRem4.Crem_Contig0   969520 647 -  4500979 I

a score=1768.000000
s ce10.chrX             3938964 8 + 17718866 CATCAGGT
s caeRem4.Crem_Contig0   970167 8 -  4500979 CATTAGGT
i caeRem4.Crem_Contig0  I 647 C 0
s caeSp111.Scaffold630  5960329 8 + 20921866 CATCAGAT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2257275 218 +  4147112 I
e caeJap4.Scaffold18142  153734 594 -   343467 I
e cb4.chrX              9067915 277 + 21540570 I

a score=4589.000000
s ce10.chrX             3938972 31 + 17718866 GGTGTGCAAACTTGAATTTC--CATTCACCGAG
s caeRem4.Crem_Contig0   970175 22 -  4500979 ---------GTCTGGATTTA--CATTCACTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5960337 30 + 20921866 ---GAGCAAATCTGGCGTCTTGTATTCAGTGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2257493 31 +  4147112 GGtgtgaaattttggattct--tATTCACTGAG
i caePb3.Scfld02_0      I 218 C 0
e caeJap4.Scaffold18142  153734 594 -   343467 I
e cb4.chrX              9067915 277 + 21540570 I

a score=25269.000000
s ce10.chrX             3939003 92 + 17718866 CAATATCA-----TTTCGCATGAATG-AAAGTTT---GCATAAATTTTCATTAGAAACTTAC---CACATGTCATGTC-CAAGTTTCATGTGTTCTTTTTCTGTG
s caeRem4.Crem_Contig0   970197 94 -  4500979 CAATATCA-----TTCCACATGAATG-AAACTTCTTTGCATACATTTTCATTAGGAACTCTCACACATAC-TCTTCCT-TGAGTTTCACGTGT---TCATCTGTc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5960367 85 + 20921866 CAATATCA-----TTTCACATGAATG-AAACTTC---GCATACATTTTCATTAGGAACT------CACTC-TCGCCTT-TCAGTTTCGCTTGT---TTTTCCAAT
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2257524 87 +  4147112 CAATATCA-----TTTCGCATGAATG-AAACTTT---GCATACATTCTCATTAGGAACG------CAGAC-TCGCCTTACCAGATTCTCATGT--GTTTTTCAAc
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18142  154328 87 -   343467 CAATATCATTTCCTTTCACATGAATGCAAACTCT---GTTTTTCTCTTCATTAAGCGCT--------AAC-TCATCCT------TCCGCATGTTCGTGTTTTGTT
i caeJap4.Scaffold18142 I 594 C 0
e cb4.chrX              9067915 277 + 21540570 I

a score=153941.000000
s ce10.chrX             3939095 327 + 17718866 CAAAACAATGTTTTTC---T--------CA--TGCCATTTTT-----------------CCTGTTCGCAGATACATCGATGCCTCATTTTTCTC-AATCTACCCCCCCCCCCCCCTCCCATCCACCGGATCATCTTCAAATTG--TCGTAGCAGCTGCTC--TC-GCTTTAATTTTTCACCTTTTCTCATC-CTGTGCTATCAT----TCTATC-TCTATT----CCTCACCACC---TACATTTTCGTTTTTTTTTTTGC-------------TTTTGTC---------TGAAACGAA---ACG-CATATCAACT---TTCATTCATGAATTGAGGAAAA-CAACTACAAAGTAAAAGCAGTGATGGGGAAGTGGCCGTCAAGTTCCGATCAAAATGGTAAGT--AA--
s cb4.chrX              9068192 345 + 21540570 CAAAAccttgtttttcattt--------catctcgtttttttcttcctcttttcctcCGCCTGTTCGCCGGT--ATCGAtacttcatttttctc-aatctc-------------------TC-ACCAGCTCTTCTTCAAATTGTTTCGTAACAGCTGCTCAGTC-GCTTTAATTTTTCACCTTTTCTCATT-ctacaccccccccccccctatcATCTTTTGCTATCTTTCCACC---TACTTTGACg---tgcttttttcttctcgacatcttttttgtc---------tgaaaagaaGACGCT-CATATCAG-T---TTCATTCATGTTTTGAGCGTCA-CAACTCCAaagtaaca-----aaaaatgaagtggCCGTCGAGTACGGATCAATCGGGTGAGT------
i cb4.chrX              I 277 C 0
s caeRem4.Crem_Contig0   970291 301 -  4500979 taaaacattgtttttc---t--------ca--ccgcttttttcttcct-----------tctgtTCGCAGAT--ATCgatacttcatttttctc-aatctc-------------------tCGACTGCCTCATCTTCAAATTG--TCGTAACAGCTGCTC--tc-actttaatttttcaccTTTTCTCATT-CTACACTATCATCTTCTCTATC-TCTATT----TCTTGCCACc---tactt--------cacttttttc-------------ttttgtc---------tggaaaaaa---acg-cATATCAGTT---TTCATTCATGTTTTGAGCACCA-CAACTCCGAAGTAACA-----AAGAATGAAGTGGCCATCGAGTACCGATCAATCTGGTAAGT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5960453 304 + 20921866 Gcggttcttttttttc---t------------cgttttttttct---------------tctgttcgtAGAT--ATCGATacttcatttctctc-aatcACCATCCCT------------TCCACTTGCTCATCTTCAAATTG--TCGTAACAGCTGCTC--TTCGCTTTAATTTTTCaccttttctcatttctacCCTATCATCTTTTCTATC-TCTATT----CTTTCCCAcc---tactt-----------ttttttc-------------ttttgtc---------tgAAAAGAA---ACGCCATATCAACT---TTCATTCATGTTTTGAGCATAA-CAACTTCGAAGTAACA-----AAGAATGAAGTGGCCTTCTAGCACAGATCAATCTGGTAAGTGG----
i caeSp111.Scaffold630  I 1 I 146
s caePb3.Scfld02_0      2257612 309 +  4147112 caaaacttgttttttc---tgcttgcagta--aggtttttttct---------------tctgttcgcTGAT--ATCgatacttcatttttctcaaatcttcaTCCC-------------TCCACTTGCTCGTCTTTAAATTG--TCGTAGCAGCTGCtc--at-gttttaatttttcaccttttctCATT------CTATCATCTTTCCTATC--CTATT----CTCCCCCACCtcttacttc-------ttcttttttc-------------ttttgtc---------tgaAAAGAA---ACG-CATATCAGCT---TTCATTCATGTTTTGAGCATAA-CAACTCCGAAGTAACA-----AAGAATGAAGTGGCCTTCCAGTTCGGATCAGTCCGGTAAG-------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  154415 292 -   343467 -------------------------CTGCA--CAATGTGCCATC---------------ACGGTTCTCAACT--ATCGACGAGTCATTTTGCAC-AATCCACGCTGCT------------GC--CTGCCCCGTTTTAAAATTG--TCTTAACAGCTGCTC--TA-GTTCTAattcttcactttttctcTGC---TCCCGATCCTCTTTTTTGTT------C----TCATCCctct---tattt------------ttttgc-------------tttggtctgaaaaaagtgaaaagaa---aCG-AATATCGGTTGTATTCCTTGATGTTTTGAGAAAAAGCAACTACGAAGTAGCA-----CAAAATGAAGTGGCCGTCAAGTGCCGATCAGACCGGTAAGT----CT
i caeJap4.Scaffold18142 C 0 C 0

a score=-3321.000000
s ce10.chrX             3939422 16 + 17718866 TAAGCGTTATTTTATT----
s cb4.chrX              9068537 15 + 21540570 -CAATAATCATATACT----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   970592 13 -  4500979 ---ATTACTGTATACT----
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2257921 16 +  4147112 TGGACGTTTTTTCATT----
i caePb3.Scfld02_0      C 0 I 742
s caeJap4.Scaffold18142  154707 16 -   343467 ----TATATTTTAACTGTTT
i caeJap4.Scaffold18142 C 0 I 8
e caeSp111.Scaffold630  5960757 146 + 20921866 I

a score=-914.000000
s ce10.chrX             3939438 22 + 17718866 TCATTTTAATTTATCTGTATAT
s cb4.chrX              9068553 22 + 21540570 TCATTCTCAGATATGTACATAC
i cb4.chrX              I 1 I 58
s caeRem4.Crem_Contig0   970606 16 -  4500979 TTGTT---AGTTATCTTTG---
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold18142  154731 22 -   343467 TTGTTTTTAATGGTCGGAGTTT
i caeJap4.Scaffold18142 I 8 C 0
e caePb3.Scfld02_0      2257937 742 +  4147112 I
e caeSp111.Scaffold630  5960757 146 + 20921866 I

a score=-6063.000000
s ce10.chrX             3939460  53 + 17718866 GTATATATATACTT--------------------------------------------------TTTTCGGCACTTG-------------GCAATTTTGGTACTTGC---TGATATGTA
s caeRem4.Crem_Contig0   970622  36 -  4500979 ----ATA-ATAATC--------------------------------------------------TTTGTAAAATTGAA-----------AGTGATTTTGTTC-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  154753 117 -   343467 GTA-ATA-ATAGTCGGCAAATATGGTAttgtaaaacaaaaaagtagcaacgcggtgtttgcgtacttttaaaattcaaacgaaaatgggagcAATTATCATCATTTTccatgatatttc
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2257937 742 +  4147112 I
e cb4.chrX              9068575  58 + 21540570 I
e caeSp111.Scaffold630  5960757 146 + 20921866 I

a score=-14995.000000
s ce10.chrX             3939513 71 + 17718866 --TTA--------------CCAAAA--------------------TGAT----CCAAATATTTTAAGTTTTAAGTTTTGAGACATACTTTTAA----------------------------------AAGCCTATGCATCTTTGA
s cb4.chrX              9068633 94 + 21540570 --tca---------------caaaa--------------------aattgtgatagTGTGATTAACATCTCAtaagttga---ccactttttgttatctttcatagaaaatgggatatatgggttcaaagtt-----------ga
i cb4.chrX              I 58 I 51
s caeRem4.Crem_Contig0   970658 50 -  4500979 --TAA--------------TCAAAA--------------------TATT----CAACCTGTTTAGCAACACATACCGTG--------TTTCTG----------------------------------AAGTC-------------
i caeRem4.Crem_Contig0  C 0 I 10
s caeJap4.Scaffold18142  154870 89 -   343467 tttcattgccgtttgaatttcaaaagtacgcaaacaccgcgttgcaagt----ttttgttttccaaatacCATATTTTCCCGcgcaagtttta----------------------------------------------------
i caeJap4.Scaffold18142 C 0 I 29
e caePb3.Scfld02_0      2257937 742 +  4147112 I
e caeSp111.Scaffold630  5960757 146 + 20921866 I

a score=-63932.000000
s ce10.chrX             3939584 136 + 17718866 AACC---GTTCATTTTT--------CGGTAATTTGT-------CTACTCGGA------------AATTG-----GCAACT-TTGGCAATTTCTAG-------------TTTTTAATTGTTTTTTTTTCAAATGCAAAACA-------------------------TTTAAATTTGCCCTAATTTTTTAGCAC------------TGACC--------------------------------------------------------------------------------AAATATTTCCAAG
s cb4.chrX              9068778 280 + 21540570 ATTTGAGTTTTATTCAAGGAAG-TACGctactttgttcaaaatctaGTGAGGCGTGTGTAGGATAATAG-------Aacc-aaaacaattttgattgaaa--------caaaaaaacgatttcCTTCCTCCT-GCAAACCATATCACCTGCATTCTCCATT----TttgatcttcttcttttttatcatcTCTTTGTAGTATGATGTTCAGTTAAAACGTGATTTCACTATATCCTCCTGCTGATCACAAAATTACACAGAACATGAAAATGAGATGAACATCGAGTGGAAATAAGACTATA
i cb4.chrX              I 51 I 31
s caeRem4.Crem_Contig0   970718 120 -  4500979 ATTT---CTTCATATCATGACA-AATGTTAGTCTGT-----GTGTAGTTTGAC-----------AATAA------------GAAATAGCCT---------------------AACGTGATTTC--------------ACTCTATCAAGGGT------------------------------TTCGTCCCCTC-----AACATCACGTTC--------------------------------------------------------------------------------ACATAATACAAAA
i caeRem4.Crem_Contig0  I 10 I 13
s caeSp111.Scaffold630  5960903 159 + 20921866 accc---cttttttcca----------ttcgtttGT----AGTCTGATATCACTTGTG-------------------ACC-TAAACAAGATTTACCGTAG-----TTCTTCAAACATTATCTTATTTCTCATCGAAAACAGTTTGAGGGATTGTCTGGATT-GTATTTAAACAT-------TTTGTGAACTT---------TTATGAtt------------------------------------------------------------------------------gaatttaat------
i caeSp111.Scaffold630  I 146 C 0
s caeJap4.Scaffold18142  154988 209 -   343467 accc---gctcacatttttgcaccgCGTTCGGTTGA---AAACCCTGAGGGGCGGATTTTTGCCACtacttactgtagccggcaagaatattgaattgataatatattTTTCGAACTCACGTTCTcatgaattcaaaaaaaaaagaaagaagataTGGAAGCTTGATTGGAATAGCGctaattattaatttt-------tgttataAAT--------------------------------------------------------------------------------GTGTACTGCCAGA
i caeJap4.Scaffold18142 I 29 I 24
e caePb3.Scfld02_0      2257937 742 +  4147112 I

a score=235267.000000
s ce10.chrX             3939720 362 + 17718866 TTCAGACCA---AAATCCAGATGGAATCATGACATCTACTTTTGGTAGAGACGTGGAGTCGGTTGCTTTCGCGGTTTTATTATTTTTGGCAGCTGGAATTGTACTTTTTATCTCCTGTTTCTTTGTCACCAAATGCTTACAATGCTACAAAGCCCGACAGCGGCGGT-GAGCTAT-TTTAATAAAT-GTTCT-------AGTCAAAATCATGCATGGAAAAATTTTCAgactacgacgaaaagctctcggcgaagacgacgacgacgatgatgatgatgatgatgttgataatgatgtg---------gatattgatgaggatgaGCCACAAACTACAATCACAAATTCCAGTCCTGATCTAGTAAAAGTGTG-ATTAATGTATA--
s cb4.chrX              9069089 355 + 21540570 ttcagaaca---acacCCCGATGGAATCGTCACGTCGTCATTCAGCCGGGACGTTGAATCTGTGGCCTTTGCGGTGCTTCTGTTCTTGACCGCAGGAATTGTTCTTTTCATTTCCTGCTTCTTCGTCACCAAGTGTCTTCAATGCTACAAGGCAAGGCAAAGAAGGT-AAACCCtccttgaaaaatcgaattctgaaaaacacaatttcCTG-----------TTTTAGACTCCGCCGCAAAGCTCTTGGGGAggatgatgacgacgacgatgatgacgat------gtggacaatgat---------gacatggatgaggatgaGCCCAACACTGGAATCACCACATCCAACCCGGATCTCGTTAAAGTTTGAACTCTTATATA--
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   970851 352 -  4500979 TCTAGGACA---ACACCCCGATGGAATCGTCACGTCTTCATTCAGCAGAGATGTTGAATCTGTGGCCTTCGCTGTGCTATTGTTTCTAGCCGCAGGAATTATCCTTTTCATTTCCTGCTTCTTCGTCACCAAATGTCTTCAATGCTATAAAGCAAGGCAGAGGCGGT-AATCGACATTTTGTGAAT---ATTgcgaaaaatccaatttcctg-----------tttcagacTCCGACGCAAAGCTCTTGGAGAAGAtgatgacgacgacgacgaggacgac------gaggacgacgCT---------GATATCGATGAAGATGAGCAACAAACTGGAATCACGAACTCTAATCCTGATCTTGTTAAAGTCTGAAACTGTATCTA--
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold630  5961062 342 + 20921866 ttcagaaca---acATCCCGATGGAATCGTGACATCTTCATTCAGCAGAGATGTTGAATCAGTGGCATTTGCTGTGTTATTATTCCTAGCTGCTGGGATTATCCTCTTCATTTCCTGTTTCTTTGTTACCAAGTGCTTGCAATGTTATAAAGCTAGGCAGAGAAGgtcaataacaaaaaaagagat-ggatt----aaaaaacaatttcctG-----------TTTCAGACTTCGACGCAAAGCTCTCGGagaggatgatgatgacgatgacgac---------------gacgatatg---------gatatcgatgaggatgaACCCCAAACTGCAATCACCAGCTCCAACCCTGATCTTGTTAAAGTCTGAATCTGTATTTA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2258679 347 +  4147112 TTCAGAACA---GCATCCCGATGGCTACGTGACGTCTTCATTTAGCAGAGATGTTGAATCCGTTGCATTTGCAGTTTTATTATTCCTTGCCGCCGGAATTGTTCTATtcatttcctgtttctttgTCACCAAATGTCTTCAATGCTATAAAGCCAGACAGAGGAGGT-AATCTGCAAACCTTACct-gaact----caaaaacaatttcctg-----------tttcagactCCGACGCAAAGCTCTCGGGGAGgacgacgacgatgatgacgacaatgat---------gacgacaTG---------GATATTGATGAGGACGAACCACAAACTGCTATCACTAACTCCAATCCTGATCTTGTAAAAGTTTAAACCTGTATATT--
i caePb3.Scfld02_0      I 742 C 0
s caeJap4.Scaffold18142  155221 361 -   343467 TGCAGATCAGCCGCATCCGGACGGATTTATCAAATCTTCATTTGGAAGAGACGTTGAATCAGTGGCCTTTGCTGTCCTCCTATTTTTGGCCGGAGGCATTGTACTTTTCATTGCATGTTTCTTTGTTACCAAATGTCTTCAATGTTACAAAGCGAGACAACGAAGGT-AGGCTTCAAAT--TAGCT-Aaatt----caaatataaaactat------------TTGCAGGCTCCGTCGAAAAGCTCTTGGCGAGGATGACGATGATGATGACGACGATTGT------GAGGATAACAATGTCCCCAGCGATATCGATGAGGAAGAACCACAATCGGCAATTGCAAATTCCAATCCACCTCTTGTAAAAGTTTGAGAAAATATGTATA
i caeJap4.Scaffold18142 I 24 I 1714

a score=-25890.000000
s ce10.chrX             3940082 166 + 17718866 -----TTGTACAATGCatttttaaaataaaaat-taattaCCGCATTTCATTTTCATGGAAATAATGAATTTGTGCAAGTTTGTGTCGA---GCTGAAC----TTTCTTATCAGCGATGACAATCGCCCAGCCCACACACAATTAAAATTTCTTGCTAAATTTAGAAGTGAGTTCCGTT
s cb4.chrX              9069444  99 + 21540570 TTTGGCTGTACAA-ATTGTTGTATAATAAAAACGTTAATTGtgtttttga-------------------------ctattt--tctcaattttcggagt----tca-------------acaaaaa--------atacttcatt---------t-------tgaaaaa-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   971203  81 -  4500979 -TTGGTTGTACAA-AGTTTTGTGTAATAAA----TTAATCCag-------------------------------------------caa-----aaaat----tc--------------acaaaaa--------atactttattgaaagttcat-------tgaaaag-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5961404 106 + 20921866 -ATAACTGTATAA-ATGTTGATATT---------TGATTTCTGTT------------------------------CGAATC--tttcaa---acaaaatattattc---------gaataaaaacgGATAGGAAATGTTTCATTAGTACTTATT-------CAGAAAG-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2259026  94 +  4147112 -CTGAATATATAA-ATGTTATAACA---------TAAAGTCTG---------------------------------AAGTT--TCCCGA---GAAAAAT----TCC---------CATTACAAAAG------------TTTATTAGTGCTTGTTTTTCAGCCTGACAG-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  155582 1714 -   343467 I

a score=513693.000000
s ce10.chrX             3940248 1266 + 17718866  
s cb4.chrX              9069543 1190 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   971284 1207 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  5961510 1152 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2259120 1180 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  157296 1300 -   343467  
i caeJap4.Scaffold18142 I 1714 C 0

a score=-1294.000000
s ce10.chrX             3941514 1 + 17718866 -T
s caeRem4.Crem_Contig0   972492 1 -  4500979 -T
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  5962662 1 + 20921866 -T
i caeSp111.Scaffold630  C 0 I 31
s caePb3.Scfld02_0      2260300 1 +  4147112 -T
i caePb3.Scfld02_0      C 0 I 53
s caeJap4.Scaffold18142  158596 1 -   343467 A-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9070733 10 + 21540570 I

a score=53.000000
s ce10.chrX             3941515 15 + 17718866 TCAACATT-------TTGAAGT
s caeRem4.Crem_Contig0   972493 15 -  4500979 TTATCGAT-------tgaaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  158597 22 -   343467 TTATGATTATATATATTAAAGT
i caeJap4.Scaffold18142 C 0 I 95
e caePb3.Scfld02_0      2260301 53 +  4147112 I
e cb4.chrX              9070733 10 + 21540570 I
e caeSp111.Scaffold630  5962663 31 + 20921866 I

a score=182.000000
s ce10.chrX             3941530 2 + 17718866 TA
s caeRem4.Crem_Contig0   972508 2 -  4500979 ta
i caeRem4.Crem_Contig0  C 0 I 6
e caePb3.Scfld02_0      2260301 53 +  4147112 I
e caeJap4.Scaffold18142  158619 95 -   343467 I
e cb4.chrX              9070733 10 + 21540570 I
e caeSp111.Scaffold630  5962663 31 + 20921866 I

a score=0.000000
s ce10.chrX             3941532 618 + 17718866  
e caePb3.Scfld02_0      2260301  53 +  4147112 I
e caeJap4.Scaffold18142  158619  95 -   343467 I
e cb4.chrX              9070733  10 + 21540570 I
e caeSp111.Scaffold630  5962663  31 + 20921866 I
e caeRem4.Crem_Contig0   972510   6 -  4500979 I

a score=434.000000
s ce10.chrX             3942150 26 + 17718866 TTGGGTAAAAAAAACAAAGTCAGAGA
s cb4.chrX              9070743 20 + 21540570 ttggaaaaaggaaataaaat------
i cb4.chrX              I 10 C 0
e caePb3.Scfld02_0      2260301 53 +  4147112 I
e caeJap4.Scaffold18142  158619 95 -   343467 I
e caeSp111.Scaffold630  5962663 31 + 20921866 I
e caeRem4.Crem_Contig0   972510  6 -  4500979 I

a score=-688.000000
s ce10.chrX             3942176 7 + 17718866 TTTTTGT
s cb4.chrX              9070763 4 + 21540570 -attc--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   972516 7 -  4500979 ttttctg
i caeRem4.Crem_Contig0  I 6 C 0
e caePb3.Scfld02_0      2260301 53 +  4147112 I
e caeJap4.Scaffold18142  158619 95 -   343467 I
e caeSp111.Scaffold630  5962663 31 + 20921866 I

a score=-1787.000000
s ce10.chrX             3942183 3 + 17718866 TTG-
s cb4.chrX              9070767 1 + 21540570 ---a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   972523 3 -  4500979 -tgg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5962694 3 + 20921866 TTG-
i caeSp111.Scaffold630  I 31 C 0
e caePb3.Scfld02_0      2260301 53 +  4147112 I
e caeJap4.Scaffold18142  158619 95 -   343467 I

a score=10743.000000
s ce10.chrX             3942186 16 + 17718866 AAACTCACATTTTTAA
s cb4.chrX              9070768 16 + 21540570 aaactcaCGTGTTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   972526 16 -  4500979 aaACTTACGCTTTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5962697 16 + 20921866 AAACTCACGCTTGGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2260354 16 +  4147112 aAACTCACGTTTTGAA
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold18142  158619 95 -   343467 I

a score=214819.000000
s ce10.chrX             3942202 330 + 17718866 ATTATGGAGGTTTGAAAGTGAAAGCGTCAAAGAGTGATATTCGTTTAATCAGGGCGGGATCGGTGAACGGACGAGTTGAACTTGGATGG---GCCACAGATAGTCAGTGTTGACCTCGACAATACTCGCCGATGGGTGCTCTCAACACTTTCGATCGGCTGAAA------TGA--------GAAGATTGGTTGAGAG-----------------------------------------------------------TAGGAAGAAAA-----AAAAC--TGAATAGTGAC---G-----GGGGTTCAGTAAAGGAAGGATAACAACAAC--TTTTCTTGCCATTCATTATATTATTC-AAAGAAACCTCACGTTTAATCCGCCTAATCATCT------TTCACTTGTAGTCAAGGCCCCAGCCAAAGAAT---
s cb4.chrX              9070784 406 + 21540570 ATTATGGTGGCTTGAAAGTGATTGCGTCAAATAGTGATATTCGTTTAATCAAGAATGTTTCGGTGAACGGACGAATTGAGTTTGGATGC---GCCACAGATAGTCAGTGTTGACCTCGACAATATTCGCCGATGGGTGCTCGCAACACTTTCGATCGGCtgaaaaagatggaaaaatgatgaaaaaatataaaagtaggagataaaagaaaTtagtgtgtatgtgtgtgtgccTTTAGAAGGGAAATGGCAAAGAGGAGGAAGAGAT-----GAGAATGTGCATGGCGAC---GGACGAGCGTTTC--CAGCAGAGGaataataaaaacttttttttcagc-tgcatTCTATTATTCCGAAGAAACCTCACGCGTAATCCGCCTAATCATCT------TCTTGT--TTGTCA--GTTTCAGTCAAAGAGT---
i cb4.chrX              C 0 I 1545
s caeRem4.Crem_Contig0   972542 342 -  4500979 ATTATGGAGGTTTGTAGGTAATTGCGTCAAATAACGATATACGTTTAATCAAGAAGGAATCGGTGAACGGACGAGTAGAATTTGGATGA---GCCACAAATAGTCAGTGTTGACCTCGACAATATTCGCCGATGGGTGCTCGCAACACTTTCGATCGgctgaaaaa-acggaa--------atgaaaTGTATTAGTGGAGAGtaagagaaa---------------------------------------------gagga--agat-----gGGAA--TGCGTAGTGAC---G-----GCAGTTC--CAGCAGAAGAAtaacaacaac--ttttttcaga-tgcattCTATTATTCCGAAGAAACCTCACGCATAATCCTTTT-ATCATCT------TTTTATTGTTGTCA--GTTTCAGTCAAAGaac---
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  5962713 323 + 20921866 ATTATGGAGGTTTGAAAGTGATTGCGTCAAATA---------GTTTAATCAAGAAGAAGTCGGTGATCGGAAGAATTGATTGGAGATAA---GCCACAAATAGTCAGTGTTGACCTCGACAATATTCGCCGACGGGTGCTCGCAACACTTTCGATCGGCTGAAA---gcagag--------agagaatgaatgagtGTT---------------------------------------------------------------AAGAT-----GAGAA--TGGATAGTGACGGAG-----GGAGTTC--CAgcagaagaatgaaaacaac--ttttttcagc-tgtcttctattattcaaaagaaacctCACGCATAATCCTTATATTCATCTCTTTTATTCTGG--TTGTCA--GTTTCAGCCAAAGACC---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2260370 326 +  4147112 ATTATGGAGGTTTGAAAGTAATTGCGTCAAATAACGATATTCGTTTAATTAGGAAAGAATCGGTGAACGGACGTGTTGAATTAGGGTGA---TCCACAAATAGTCAGTGTTGACCTCGACAATATTCGCCGATGGGTGCTCGCAACACTTTCGACCGGCTGAAA-----------------AGGGAAGGAATGAGTGGT---------------------------------------------------------GTGGAGGAGAT-----GAGAA--TGCATAGTGAC---G-----GGGGTTC--Cagcaaaagaataaaaacaac--ttttttcagc-tgcATTCTATTATTCAAGGGAAACCTCACGCGTAATCCGCCTAATCATCTCAC---TCTTGT--TTGTCA--GTTTCAGGCAAAGAAC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  158714 331 -   343467 ATTAAGGAGGTTTGTAGTTGATGGCGTCAAAAAGCGATATTGGTTTAATCAGGAAAGAATCGGTAATTGGACGTGTGCAATGTGGATGAGTGGCCACGGATAGTCAGTGTTGACCTCGACAGTACTCGCCGATGGGTGCTCGCAACACTTTCGACCGgctgaga-----aaaa--------aagagaagaatgaataat---------------------------------------------------------aataaaaaagttcTTGGTGAA--TGCATAATGAC---A-----AGGGTTC--CAGC---TGGATATCAACAAG----TATTCATC-TGCGTTTTA-TATTCAAAGAAACCCTTGAGCATAATCCGTTTAATCATCT------TTCTTG--TT-TTA--TTCTTGGTTATTGAGGGat
i caeJap4.Scaffold18142 I 95 C 0

a score=-227.000000
s ce10.chrX             3942532 4 + 17718866 ATTG
s caeRem4.Crem_Contig0   972895 4 -  4500979 attG
i caeRem4.Crem_Contig0  I 11 I 1
s caeSp111.Scaffold630  5963036 4 + 20921866 ATTT
i caeSp111.Scaffold630  C 0 I 64
s caePb3.Scfld02_0      2260696 2 +  4147112 AT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  159045 4 -   343467 gttt
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9071190 1545 + 21540570 I

a score=-946.000000
s ce10.chrX             3942536 12 + 17718866 ATAAAATGTTAG
s caeRem4.Crem_Contig0   972900 12 -  4500979 ATTTTATGTTGA
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2260698 12 +  4147112 ATGAAATCTCAA
i caePb3.Scfld02_0      C 0 I 143
s caeJap4.Scaffold18142  159049 10 -   343467 attcaaaaat--
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9071190 1545 + 21540570 I
e caeSp111.Scaffold630  5963040 64 + 20921866 I

a score=149.000000
s ce10.chrX             3942548 24 + 17718866 TGCATA--------AACACTTTTTTTGTGGTT
s caeRem4.Crem_Contig0   972912 31 -  4500979 AGAATAGGCtatggaaaacttttttca-gatt
i caeRem4.Crem_Contig0  C 0 I 8
s caeJap4.Scaffold18142  159059 24 -   343467 tgaaaa--------aaaatattttgtgttgtc
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2260710 143 +  4147112 I
e cb4.chrX              9071190 1545 + 21540570 I
e caeSp111.Scaffold630  5963040 64 + 20921866 I

a score=-11169.000000
s ce10.chrX             3942572  55 + 17718866 --TTTTGATGTT-----------------------------------GTTTCAAGAATTTTATCCCT----GAAACCACCTGCT------ATT------------------TTGTGATTG
s caeRem4.Crem_Contig0   972951  75 -  4500979 --TTGCAATCTTC---------------AGCCTTCC-----------GCTAAAAAGTTTCGGTTTTA---TTGAAGCAAACATCAGGAAAACTGAAA--------------CGGTgacgt
i caeRem4.Crem_Contig0  I 8 I 24
s caeSp111.Scaffold630  5963104  62 + 20921866 --ttttgatattc---------------aa-----------------attGGATAGAtttgaaacta----gaaaacACATTTC------ATTTCCG--------------TCGCGACGT
i caeSp111.Scaffold630  I 64 I 24
s caeJap4.Scaffold18142  159083 114 -   343467 ttttttaattctctgatcagaaaatcaaaaatttcccaaacaaaaaaatcaaaaagatgTAATGTGAGACTCATAGCTCAAATT------GTTCCAAAAATGCTCACTAACAAGTGAAGA
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2260710 143 +  4147112 I
e cb4.chrX              9071190 1545 + 21540570 I

a score=-63911.000000
s ce10.chrX             3942627 350 + 17718866  
s caeRem4.Crem_Contig0   973050 540 -  4500979  
i caeRem4.Crem_Contig0  I 24 I 20
s caeSp111.Scaffold630  5963190 459 + 20921866  
i caeSp111.Scaffold630  I 24 I 28
s caePb3.Scfld02_0      2260853 461 +  4147112  
i caePb3.Scfld02_0      I 143 I 46
s caeJap4.Scaffold18142  159197 463 -   343467  
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9071190 1545 + 21540570 I

a score=-4732.000000
s ce10.chrX             3942977  9 + 17718866 ------ACCTAGACT-------------------------------------
s caeSp111.Scaffold630  5963677  9 + 20921866 ------ACAAATACT-------------------------------------
i caeSp111.Scaffold630  I 28 C 0
s caePb3.Scfld02_0      2261360  9 +  4147112 ------acGTTGGCT-------------------------------------
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold18142  159660 52 -   343467 aataaaaggtgaattttttttgttttatttttcaaatcgtaagtccaaaaat
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9071190 1545 + 21540570 I
e caeRem4.Crem_Contig0   973590 20 -  4500979 I

a score=-1022.000000
s ce10.chrX             3942986 16 + 17718866 AAAGATC---ACTTGAATT
s caeRem4.Crem_Contig0   973610 19 -  4500979 AAAGAACTCCTTTTCAATA
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold630  5963686 14 + 20921866 CGAAAAC-----TTGAGCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261369 16 +  4147112 TTATATC---TTTTTCGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  159712 16 -   343467 agaaaat---tcttGAATT
i caeJap4.Scaffold18142 C 0 I 73
e cb4.chrX              9071190 1545 + 21540570 I

a score=-8052.000000
s ce10.chrX             3943002 41 + 17718866 --------------TGGAAAT------GGTCAAGAAAATGAGC----AGTAAAAAGCGCGTAT----------------TT
s caeRem4.Crem_Contig0   973629 75 -  4500979 GATAGACTGT----TGAAAAGGCctcaaagcaaaaaaaaccgttgaaaaaaagcgaaacGAATATAAAATGCCGCATTT--
i caeRem4.Crem_Contig0  C 0 I 87
s caeSp111.Scaffold630  5963700 46 + 20921866 TATATAGTCA----TGAAAAAAC----Gatcaaagaga---------aataaaccgtatttct------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261385 51 +  4147112 TATACGCCCACCTCTGCCGAA------gatcaataaaattt------catgaacGGTTCAAAT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  159728 73 -   343467 I
e cb4.chrX              9071190 1545 + 21540570 I

a score=-1489.000000
s ce10.chrX             3943043 46 + 17718866 TTTCTGTTGTTTAACCTATGTCACAACTATTGACAAAACTGACACT
s caeSp111.Scaffold630  5963746 31 + 20921866 tttttgt--tccaaCACGGATGCAAGCCTT-------------GTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261436 38 +  4147112 GTTCTGT--TCTAACG-GCAAGAAAACtatagaagaaa-----atg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  159728 73 -   343467 I
e cb4.chrX              9071190 1545 + 21540570 I
e caeRem4.Crem_Contig0   973704 87 -  4500979 I

a score=-5026.000000
s ce10.chrX             3943089 33 + 17718866 AGGGCGGTATGTATGTTTGTGTG-------------GAAAGCCACG--
s caeSp111.Scaffold630  5963777 24 + 20921866 CAAAGGAATTGAAGGATT------------------GAGAA----G--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261474 42 +  4147112 aagaaggattGCGTGGTTTTATACGGTCGACCGgcagaaaa----g--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  159801 34 -   343467 ----AGGGCTACATTGTT------GGTGGGCAAGTAGAGga----atg
i caeJap4.Scaffold18142 I 73 C 0
e cb4.chrX              9071190 1545 + 21540570 I
e caeRem4.Crem_Contig0   973704 87 -  4500979 I

a score=-11750.000000
s ce10.chrX             3943122  68 + 17718866 ----------------GACAAGCGAA-----TTATTATTGTATTTGTTCTGATTG---TGCCTTTCAAG--------TTTCTCC--------------------------ATTTTCCGACTCATTA
s caeRem4.Crem_Contig0   973791  76 -  4500979 ----------------GAAAAAcggt----tttattgttttct---------------cgATGTTCTTTGTAGGAAACCACCCC--------CGCGTTATC-----GATATGTTTTGGATTTA--A
i caeRem4.Crem_Contig0  I 87 I 2
s caeSp111.Scaffold630  5963801  74 + 20921866 ----------------GAGGAAcgaa---ttttattatttcataCG------------CGTTCTCCTCC--------CTCCTCC--------GTCCCTCCT-----acgcattttttgaaacatca
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2261516  81 +  4147112 ----------------gaagaaaaaa----tgtattattgTGTTTGTTCGGCCTG--CCATCTTTCTTT--------CTGCCCC--------CGCactctg-----tttcatttttgggagGA--A
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18142  159835 114 -   343467 caaaaaagaaaaaaaggaaaaaaaaacgtttatatTATTGTGTTTGTCCCAAcagtatttttttccttt--------cttttcctttttttgctccTTCTCTGGCAACCCATTTTTTCATTA----
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9071190 1545 + 21540570 I

a score=104741.000000
s ce10.chrX             3943190 124 + 17718866 --------------------------------ACGTACCTGGAACGTGTGAAGAAGATTGAGTGAAGGCCAATTCTCATAGCAGTGCTTCTGTCTCTTTATCTTTTTGAGCGGACAAGCCACTGGCAAAAAAAATCTGGAAAAAAACAATTAGTAA
s cb4.chrX              9072735 119 + 21540570 --------------------------------ACTCACCTGGAACGTGTGGAGAAGAAAGTCTGAAAGCCAATTCTCATAGCACTGCTTCTGTCTCTTTGTGTTGTTGAGCGGACAAGCCACTGGt-aaaaaaatctgcaaaaaatgaattg----
i cb4.chrX              I 1545 C 0
s caeRem4.Crem_Contig0   973869 123 -  4500979 --------------------------------TCTCACCTGGAACGTGTGAAGAAGATTGTGTGAAAGCCAATTCTCATAGCAGTGCTTCTGTCTTATTGCGTTTTTGAGCGGACAAGCCACTGgc-aaaaaaatctggaaaaatgaaaatgaata
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5963878 117 + 20921866 --------------------------------CCATACCTGGAACGTGTGAGAAAGATTGTGTAAAAGCCAATTCTCATAGCAGTGCTTCTGTCTCTTTGCGTTTTTGAGCGGACGAGCCACTggcaaaaaaaatctgaaaatttgaga-------
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2261600 124 +  4147112 --------------------------------ACGTACCTGGAACGTGTTGGAAAGATTGGGTGAAGGCCAATTCTCATAGCAGTGCTTCTGTCTTATTGCGTTTTTGAGCGGACAAGCCACTGACTGAATAAATctgtaaatcaaaaaataataa
i caePb3.Scfld02_0      I 3 I 161
s caeJap4.Scaffold18142  159949 156 -   343467 CATTTGCTCAAACTTGATTTTCTATGTATGTGTCATACCTGGAACGTGTGAGGAAGATGTTGTGTAAGCCAATTCTCATAGCAGTGCTTCTGTCTTATTGCGTTGTGGAGCGGACAAGCCactgattaaaaaaatcctgaaaattaaaaaaaataa
i caeJap4.Scaffold18142 C 0 I 1

a score=-14324.000000
s ce10.chrX             3943314 53 + 17718866 TTGTGAA-------------ATATGGAAGAAAGGTTCGATTTAAAAAACATAAAG----------------AATTGAATGCA
s cb4.chrX              9072854 27 + 21540570 ----------------------------gaaaaat---aattggaat------------------------tttggaattga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   973992 68 -  4500979 ttattta-------------taacaggtgaaaaat-caaatcagaaaacaaaaagagatgaCATCAGATTTCTTGGAATTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5963995 23 + 20921866 -------------------------------------------------------ttATGACGTTTG----TTCgaagaaaa
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  160106 66 -   343467 ttatgtacatatgtatgtatgtacgcTAAAAATATGAGAGtcgaaagaaaaagaa----------------aattaaataca
i caeJap4.Scaffold18142 I 1 I 1189
e caePb3.Scfld02_0      2261724 161 +  4147112 I

a score=1102.000000
s ce10.chrX             3943367 39 + 17718866 ---AAGAAATGTAG------GTGAA-CATACAAAAATAGAATGACAAAT
s cb4.chrX              9072881 49 + 21540570 ttttgCAGATGGAATTCgtggaaaacaaaagaaaaaaagaatgatatat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   974060 43 -  4500979 ---AACATATGGAAtat---gaaatggagaaaaaaacagaaaaacaaat
i caeRem4.Crem_Contig0  C 0 I 147
s caeSp111.Scaffold630  5964018 36 + 20921866 ---gacagataaaa------gaaat-gaaagagaaaaaaaagaatg---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2261724 161 +  4147112 I
e caeJap4.Scaffold18142  160172 1189 -   343467 I

a score=-5661.000000
s ce10.chrX             3943406 139 + 17718866 ------GTTTAAAGTGGGAAAAGTTTCTTTCAAAACTTTGTCAAAATTCTTCAGAAAAAATTGAAAACTATTTGATTTTTTGAGCAAATTTTGCATAAAATTTTTGAACGTCTAGACCAATTTAAAATTTTGCCAAATTTGATGG
s cb4.chrX              9072930 105 + 21540570 gaaatggttaatactaaaaaaaat------------------gaaaaaaatagagaaaaataagatgaaataaggagttttcgaaaaattctggatcaa-------------CAGACC-----AAAA----GCCATGTGTGACGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5964054  83 + 20921866 ------tttcagatcaacgaaaaa------------------aaaatttcgaatgtATATTTCACTGAAATTGCAGGTATTGAAAGCATTTCAATTGGA-------------------------------------ATATGAAG-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2261724 161 +  4147112 I
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeRem4.Crem_Contig0   974103 147 -  4500979 I

a score=-1550.000000
s ce10.chrX             3943545 135 + 17718866 CGAGCAGCTACAATTTTTAATTTTGAGATCTTCCTTTTTTGCTTTGATCACAA--ATTTGTCATTATTCAATTACCTTTTTTAATTACAAATACTGGTAGTTTTCATGCGTTTTTATAACAATTTAGGTGAGTTTGT
s caeSp111.Scaffold630  5964137  81 + 20921866 --------TATAATGTGT--TTATGAGAACCT---------------TCAGAAGGACTTGTGA--ACTCAGTT--------------CAAGAA------------ATATGTTCTT-TGATAAAATAAGTGA-TTCG-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2261724 161 +  4147112 I
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e cb4.chrX              9073035   0 + 21540570 C
e caeRem4.Crem_Contig0   974103 147 -  4500979 I

a score=-12362.000000
s ce10.chrX             3943680 223 + 17718866 AGGTAACATGCACGGATTTTATGCGGAATTTATTTTCAAAATATGCAAAAAAGGGTTATGATTAGATAAAAACAGAATTTGAAACACCAAAAAAATGTTTGCTTTTGAAATAAAGTCAAGATTATAAAATTCGGATTTTGATATTATACTGAGTTCAATATGCAAAAATCCTGTGCTCCTC-CTCTTGATGCAATACTTTAAGCTTTTTGTAACAAGTCAGGAA
s cb4.chrX              9073035  99 + 21540570 ------------------------AGGAGACA-------CATACGCACATACACCTACAGA------------ATAATTTATAACACaacgaaaat-----------------------------------tgagtttttccgTGA-----AGTTCGA----------------ACTCATCTCTCTTGTCTCGAGACA--------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5964218 123 + 20921866 ---TCAAATG---AGAC------CAGAAAATAGTTGGTTCAATCCAAGAGAAACGCCAAGA------------ACATTTCGGAA-ACCATAAAAATATC-----------------------------ACGTGAATTTTACTGC--------GTTCTA---------------TGTTTATCTCT------TCGAAAAT--AAGGTTTC----------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2261724 161 +  4147112 I
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeRem4.Crem_Contig0   974103 147 -  4500979 I

a score=-3365.000000
s ce10.chrX             3943903 23 + 17718866 AATTGAACTAGTGAGACAACCAG
s cb4.chrX              9073134 12 + 21540570 CACGAAACTAAG-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5964341 14 + 20921866 -GTTGCTCTATTCAC--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261885 18 +  4147112 AACTGAACTTGAAACGAA-----
i caePb3.Scfld02_0      I 161 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeRem4.Crem_Contig0   974103 147 -  4500979 I

a score=13141.000000
s ce10.chrX             3943926 110 + 17718866 AAGTATATTACACTTTTGAAAAAAAACGTGATAGATGAAAGTAAAAAAGCTGGCGGCTGTGTGCGGGTAAAATAAAAACGAA----------AAGACAA------GGTATAAG--GCGAACAAGATTC
s cb4.chrX              9073146 111 + 21540570 AAGTATATTACACTTT--GAAAAGAACGTGACAGATAAAACTAA--------------GCGTGC-CGTAAAGTGAAACCGAGTTTTGAGATCAAGACAAGAGTTGGGTATAATAAGCTAACAAGATTT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   974250  98 -  4500979 AAGTGTATTACACTTT--GAAAAGAACGTGAGGGATATAACTAA--------------GCGTGC-CGTAAAGTGAAACCGAG--TTGAG---AAGACAA------GGTATAAT--GCTAACAAGATTC
i caeRem4.Crem_Contig0  I 147 C 0
s caeSp111.Scaffold630  5964355  37 + 20921866 --GTTTTCCGTACTTT------------TGAGGtataa----------------------------tttgaatgaagCC-------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2261903 100 +  4147112 AAGTATTTTACACTTT-ACGAAAGAACGTGACAGAGAAAACTAA--------------GCGTGC-CGTAAAGTGAAACCGAG--TTGAG---AAGACAT-----AGATATAAT--GCTAACAAGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I

a score=1653.000000
s ce10.chrX             3944036 13 + 17718866 AATTCCAAAGTTA---
s caeRem4.Crem_Contig0   974348 16 -  4500979 AATTCCGCAGAAGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5964392 13 + 20921866 GATTCCGGGGGTA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2262003 13 +  4147112 GATTCCGGAGGAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e cb4.chrX              9073257 25 + 21540570 I

a score=64424.000000
s ce10.chrX             3944049 202 + 17718866 -----TACGT-------------GTGGTTA----GGAGAATAACTTGGAAATTGAGTAGTAGTAGTTGTTATTCAATTTCTGATCAATC-ACT-------------GAAGGTATTTGAGC-----------------AAAAAC---AAAATGACGAAGACACGTGAGTGTG-----GCCCCTCATGACTGAAACGAAAACGCCGAAAGA-------TGGCCCCCGGTTCCCACAACTGACACG----GTTGGTGGGT-----------AGGAAAAGT-TTGCGAGA-----------------------
s cb4.chrX              9073282 269 + 21540570 ---TACGCGGAAAAAG-------GTGATGGAAACGGGATATGGAACGGAAATTG------AGTCGTTGTTATTCAACTTGTGATCAATCtgatgaatgaatgaaaagaagaaatttttgGGGTGCTGAGTTTGAGGCAAAAACAAAGAAG------AGACACGTGAGAAGGTCCCTGGCCCTCATGACTGGA---AAAACGACTGAAGA-------TAGCC--------ACACAACTGACACAGGTCGTCGATGATATCCTAGGAGCAATgaaaagagcagaaagagaaattggaaaaaaaattgagga
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   974364 229 -  4500979 ----TTGCGGAAAGAG-------GTAAGGG-----------GGCACGGAAATTG------AGTAGTTGTTATTCAACTTGTGATCAATC-ACTGAATGaat-----gaagaaatttttgagttg-------------gaaAACAAAGAAGCAATGAAGACACGTGAGAGTG-----GTCCCTcatgactgaa---aaaa--actgaaga-------tagCCTCTGGTTGACACAACTGACACA----GTCGGTGATATCc--------acgaaa----ttgaaaaaaaaacgagagaaataGGTGGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5964405 218 + 20921866 GTTAACGACTCAAA---------GTAGAGG----AGGGAAAGGTAAGGAAATTG------AGTAGTTGTTATTCAACTTGTGATCAATC-ACTGAATGAGT-----GAGgaagttgaaa------------------gaaaac-aaaaagtgaagaagacACGTGAGAGTG-----GCTTCTCATGACTGGA---AAAAGAACTGAAGATAGCCTCTAGCCTCTGGTTGACACAACTGACACA----GTTGGTGATATcc--------aagaaa----ttgagaaa-----------------------
i caeSp111.Scaffold630  C 0 I 41
s caePb3.Scfld02_0      2262016 218 +  4147112 GTTATTGCGGAAAAAGGGGTTTTGGGGTGG----GGTGGGAGGTAAGGAAATTG------AGTAGTTGTTATTCAACTTGTGATCAATC-ACTGAATGAGT-----GAAGTAGTTTGAG------------------CAAAAC---AAAGTGAAGAAGACACGTGAGAGTG-----GTCTCTCATGACTGGA---AAAAGAACTGAAGA-------TAGCCTCTGGTTGACACAACTGACACT----GTTGGTGATATCc--------acgaaa----ttgaaaaa-----------------------
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18142  160172 1189 -   343467 I

a score=-3068.000000
s ce10.chrX             3944251 55 + 17718866 --------------------CTGAAGTCGGTGTGCATTTTTTTTCGGTGATAAG--CA--TTTTTGGCGTGTTTTTGGA
s cb4.chrX              9073551 59 + 21540570 --------------------aaaaaagcCCAATTCCTTCTTTTCTGATAACGAAGTCAGGTGTGTGGCGTGTTTTTAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   974593 48 -  4500979 --------------------Atgaa---------ctcttttttcagataacgATATCA--TGTGTGGCGTGTTTTCGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2262244 38 +  4147112 gagagTCATAGGTGTAAGATATGAA-----------CCCTTGTCTGATA------------------------------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeSp111.Scaffold630  5964623 41 + 20921866 I

a score=-57129.000000
s ce10.chrX             3944306 286 + 17718866 ATGTGATAAGAAAGATAAT-TTTATTTATCATGT-----AAGGATTAGAAAATCAAAGAACAAATTTTCAAAATC---------CTAGCTTA----------------TCAGCGGATAAGAGAAAA-AAACGTGACTTGAGAGAAACT---AAAAAAA-----ACGCTTCCTAGTGGAAT-----TTTGTGATCTCTAAGGCTTAGTTCTAGTGAACTTAAAATGGTTTTAAAAAAAAGCACTGACATTTTTTGCCCGAAAGTACATTGACTTATAATAGTGCAATGTTAACTTGCAAGAAACTACAAAAAATTATATTTGTTAAACAT----------------TT-
s cb4.chrX              9073610 175 + 21540570 --GGGAC-----ATAGGATGTGTTTATGGGGTGC--TTTGATTTggcgaaaatcagaaaataattcTT-----TC---------TCGATTAAGT--GCTTATCTGGTATCACTAAAC----------------------------------TTATCAA------------CAGATTAAGGAGA----------------------------------------------------GACG---TGAGTTTT--------GAGAATTGAAGGCGAGGAACAAGGAGC----AAAGTC-------------------CACATTAGAGGATCT----------------GTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   974641 286 -  4500979 --AGGTCGGACAATAAATTTCGTTCACAAACTTT--TCTGATAAtgc-----------attaattttt-----ttcagcaatcatTGATTGAATAAgcgtgtcaaaaatcaaagaataaGAATGAG-----CCGACTTTGACTACATTTCCTTATAAATCCGTATAT-TCCTGATTAAGTGCTTATCTGTTATC----------------AATGAGCTTATCAACAGCTTATAGAGACG---tgagtttt--------caagaaaagagacaaaGTTCAGAAGACCCTTAAATTcgggaaat---------gtgaaaataagAGTAATTTCCTTTGCCTAAAGAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5964664 214 + 20921866 ----ATCTGATAACAAAAT-CATAAGTGGCGTGT--TCGGAATGTTCATCAAACGAGAg--tgctttt-----tt---------tcagaaaaac--------------tcatTGAATAAATGGGAA-----ACGACTTATGGAACATTAG-ATGTAAA----------TCTTGATTAAGTGCTTATCTGTTATC----------------GATAAGCTTATCA------------------------------------------------ACAGATTAGTGAAACGTgagtttctcaaaaaaactaacgaGCAAAGTTTAGGAAACGt----------------tt-
i caeSp111.Scaffold630  I 41 I 191
s caePb3.Scfld02_0      2262282 217 +  4147112 ------------ACACAAT-CATATGTAGAGTGTTATATAAAGGGTcatagaataaaaaataaatagt-----tc---------TGAGctgtaa--------------tcaaaaaatcaaagagagTGCgcccatttttcatcaaattcg-aTATAAATCCTTATATTTCTCGATTAAGTGCTTATCTGTTATC----------------GATAAGCTTATC-------------------------------------------------ACGGATTAGTGAGACgtgattttcttgaaaaca-------gcAAAGTTCGGGATaccc----------------tt-
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18142  160172 1189 -   343467 I

a score=940.000000
s ce10.chrX             3944592 154 + 17718866 TCAGTCAAATTGTTGGTTAGATTGCCAACTT--TCCATAAATTTAGGCTTTTTAAGCATTTGAACCCCCCAGA--------ATGTTAG-----------GATTTGCAATTAGAATAAAACACTGGTTTTAAAAAATTTTGTGGTCAATTTCCA----AAATTATTATTTTGAGAAAACA--
s cb4.chrX              9073785 137 + 21540570 ------------TCACTGAACTTTTAA----CAAACATAATTGCTTGCTCTT----CACTCTAAATTTAGAAATGATTCCGACGTTGGCGGCTCACACCGG---------AGATTAGGTTTC--AGTACAAACA------TTATCCAGTTTTGGCACTAGCCAG-------agaaaaaata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   974927 133 -  4500979 ------------CTTATgaacttttcaatttaataCATAATTGCTTGCTCTTTGC-CACTCAAGCCACGGAAAC-------ACTTTGA-----------GG---------AGTGTAGCTCTCTGAATTTAGAAA------TGATCCGCTCACACCGGAGATTAG--ATTTCAGGACAAACA
i caeRem4.Crem_Contig0  C 0 I 23
s caePb3.Scfld02_0      2262527 142 +  4147112 TCAGTTAAGTT-ccaatgaacttttcaatttaatACATAATTGCTTGCTCTTTGC-CACTCAAGCGTCGGAAAC-------ACTTTGA-----------GC---------AATGTCGCTCTctaaatttagaaa------tgatCCGGTCACACCGGAGATTAA--ATTTCAGTACACA--
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeSp111.Scaffold630  5964878 191 + 20921866 I

a score=-3590.000000
s ce10.chrX             3944746 36 + 17718866 AAGTGACTAAAAGAATTTAAAAAAATTGAAATGTTT-
s cb4.chrX              9073922  2 + 21540570 ----------------------ag-------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2262669 34 +  4147112 CAATATCC---AGTTttaaaatagaataaaaaacgTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeSp111.Scaffold630  5964878 191 + 20921866 I
e caeRem4.Crem_Contig0   975060 23 -  4500979 I

a score=-665.000000
s ce10.chrX             3944782 6 + 17718866 TCCTAT---
s caeRem4.Crem_Contig0   975083 6 -  4500979 TCATCT---
i caeRem4.Crem_Contig0  I 23 C 0
s caePb3.Scfld02_0      2262703 6 +  4147112 ---TCTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e cb4.chrX              9073924 0 + 21540570 C
e caeSp111.Scaffold630  5964878 191 + 20921866 I

a score=685.000000
s ce10.chrX             3944788 13 + 17718866 GATTTTTCAAAAA
s caeRem4.Crem_Contig0   975089  6 -  4500979 GATTTT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5965069 13 + 20921866 gatttttagaaaa
i caeSp111.Scaffold630  I 191 I 55
s caePb3.Scfld02_0      2262709 12 +  4147112 -ACTATTTCAAAG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e cb4.chrX              9073924  0 + 21540570 C

a score=-10292.000000
s ce10.chrX             3944801 67 + 17718866 TTTAGCACTAGCAGC-ACAATACGATAATTTTTAAAAAAAGTAAAAAGAGGGTAAAATTTTCAACT--GT
s cb4.chrX              9073924 40 + 21540570 -----------caaa-----aaatatatgctcacagaaaaagaaaaaaaa------cttcct--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975095 48 -  4500979 ---------GGCAgt-----ttttattacttttcttTAGAATGAAAcgga------gtttttagaaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2262722 63 +  4147112 ---GATTGAGCCAATCACGCTCTAATGAACTATTCAGGAAATACAAAGCACTCAACGTTTCCGGAT----
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I
e caeSp111.Scaffold630  5965082 55 + 20921866 I

a score=-11599.000000
s ce10.chrX             3944868 55 + 17718866 TTTGTCTAACCAGGAAGTTATTT------CCTCCAAAGTTAAGTGTCATATATGa--aaaaaa
s cb4.chrX              9073964 51 + 21540570 tcTAACATGTTAtgaatcatttt------------cagtcaaaatatGGTAAGTCAtgtgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975143 50 -  4500979 tctgagatctgaagaaaaacatt-------------GGTCGATATAAGCAAATGCAGGTGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5965137 61 + 20921866 tttttcttatcaataaTGGTATTACTACTTCCTCTGACTCATATTTCTTTTATGC--GGAAGT
i caeSp111.Scaffold630  I 55 C 0
s caePb3.Scfld02_0      2262785 26 +  4147112 -----------------------------------TAGTCATAGGGTTTCTATAC--GGAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  160172 1189 -   343467 I

a score=57986.000000
s ce10.chrX             3944923 211 + 17718866 -aatgaaaaaaat-----ataataaaagaaacgggaaaaaaaaagaaaa--aaaCTTGATTACAATA------------ACAGCTGAG-----------------ATATTTTG------TAGGTGGAAATCTCGTTGG--C--GGGTGAC-ACATACTTACTCTCCATATGCAATTCCAACAACAAGGCGCTTTTGAGAAG--------------GATT---------CCAAATATATGCGACATTGCGCAAAAACAGAGACAGAGAGAGCATC-TGGGTTGA------------
s cb4.chrX              9074015 211 + 21540570 -actagaaaaaaa-----taaat----------------------aaag-------tgATTACAATA------------GCAGCTGGAGTTAATATTCTAAGCGGATTTCCAG-------GGAGTTAAATCCCTTAGA--T--GG-TGAC-AAATACTTCCTTGATGTATGCATAACCAACAACAAGACGCTCTAGAAGGAGAAATTGTTGGTGAGGTTTGTC-AAAACCAAATATATGCGACATTGGGCAAAAAC----------AGAGCATC-TGGGTTAA------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975193 209 -  4500979 -ACAGAAGAAAAG-----TTAATTCGCCATGAAATGAGTCACGAGAAAGGAAAACCTGATTACAATA------------ATAACAGGA-------------------TTCTTG-------AGgtgaaaatccattttc--ttgGG-TGAC-ACATACTTCCTC-CTATATGCAGAACCAACAACACAATGCTCTGGAGAAAG-------------GATTTGAC-GAAACCAAATATATGCGACATTGGGCAAAAAC----------AGAGCATC-TGGGTTAA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5965198 207 + 20921866 -ATTGTTAGAAAACGGGCCCAACCAGTCACACGG----CTG----AAAA----ACCTGATTACAATA------------ACAGCTGGA-------------------TTTTTAGATATTTGAGTGAGAACCCTTTTTG--T--GCATGACTAATGTCATCTTC--TATATGCAAAACCAACAACAAAACGCTTCAGAGTTG--------------AATTTGAC-GAAACCAAATATATGCGACATTGGGCAAAAAC----------AGAGCATC-TGGGTTAA------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2262811 202 +  4147112 -ATTGTGAAAAAA-----CTAACTGGTCACgcgggaaattgaaaaaaaa----aactgattacaATA------------ACAGCTGGA-------------------TTTTTG-----TTAGGTGGAAATCTTTGTTA-----GC-TGAC-ACAGACTTCCTC--CATATGCAAAACCAACAACAAGACGCTTTAGAGGAG--------------GATTTGAC-GAAACCAAATATATGCGACATTGGGCAAAAAC----------AGAGCATC-TGGGTTAA------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  161361 223 -   343467 AACTAGAAAAATA------------------TGTGAGCGCGAAAGAAAAGGAAATATGATTATTATATGATAATCCGAGCCAGCTGAA-------------------ATTCAA-------AGGTGTGTGCTCAAATAAAAT--GAATGAC-GCACCCtttttt-ttGAGCGCAGA--CAATAACAAGAAGCTTTTGAGGAGAAG-----------ACTTCAACGGGAACCAAATATAAGCGACATTGCG-AAAAAC----------AGAGCCTCGTGGGTGAACACATGCGTTGA
i caeJap4.Scaffold18142 I 1189 I 338

a score=26121.000000
s ce10.chrX             3945134 110 + 17718866 GCACATGTC--TAGCATTA--------CTTCTCAGAAAGAGAAAAAGAGATGAATGAAGAATACTCTTTGATTGAGTTAAAAT-GGAGCATTTCGCCAAGAC---CACCCACGACGATTATATA
s cb4.chrX              9074226  97 + 21540570 GCACATGGGGGCAGCAATTCGTTTTTGCGTCTCAGACG------------------------ACTCTTTGATTGAGTTTAGGA-GGGGGA-GACATTACGGA-CCCACACATTCTGAACATGTT
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   975402  90 -  4500979 GCACATGCG---AGCATTGCGT-----CGTCTCAGAAG------------------------ACTCTTTGATTGAGTTTAAAG-GCTGCATTACTTCTCAAT-GCCACACACTAAGAATATGTA
i caeRem4.Crem_Contig0  C 0 I 182
s caeSp111.Scaffold630  5965405  89 + 20921866 GCACATGCG---AGCATTTG-------TGTCTCAGAAG------------------------ACCCTTTGATTGAGTTTAGAA-GCTGCATTACTACTAAGTGGTCACACACAAAGAATATGTA
i caeSp111.Scaffold630  C 0 I 153
s caePb3.Scfld02_0      2263013  90 +  4147112 GCACATGCA---AGCATTTG-------CGTCTCAGAAG------------------------CCTCTTTGATTGAGTTTAGAAGGCTGCATTACTTCTCAATGGACACACACGGAGAATATGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  161584 338 -   343467 I

a score=-6505.000000
s ce10.chrX             3945244 104 + 17718866 -----------TTTTTAGAGGGGAGATAACTTCACATTTATTGTTGGTGTAGTTTATGGAAAAAAAAAGTTTTTTTGAGATATT-----ATGTAACACAGACTTCTTATT-----------------------AAT-----------------------TGGATCT-----------------
s cb4.chrX              9074342 155 + 21540570 -----------TTTTTGCCAGAAAGCGGAACTCTCAAA-----TATTGGAAAGTCACGAGAGAACAGGGAAGTGTCGAAAAACTTGCCTGAGCCAGACAGACTGATTATTCCGACGAAAGC------------AAAAACACATAGAACAAAAGATTGTGTGGGTTGTGCTCGATCATCAAGCC
i cb4.chrX              I 19 C 0
s caePb3.Scfld02_0      2263103 152 +  4147112 ATACCTGGTGATCTATGC-----------ATTctgagaaatgttttttgaagttttgaagtgaagaatgaaatttttgaaaattttagaaggCTAGACAGGCTGATTTTATAAATGACAACAGTGTTCAAGGGAATAATTCTGAGAACAAAGAA---TGTGGGTTC-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  161584 338 -   343467 I
e caeSp111.Scaffold630  5965494 153 + 20921866 I
e caeRem4.Crem_Contig0   975492 182 -  4500979 I

a score=-1003.000000
s ce10.chrX             3945348 4 + 17718866 CACG-----
s cb4.chrX              9074497 4 + 21540570 TCTG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975674 4 -  4500979 TCTG-----
i caeRem4.Crem_Contig0  I 182 C 0
s caePb3.Scfld02_0      2263255 9 +  4147112 TTTGCGACT
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18142  161584 338 -   343467 I
e caeSp111.Scaffold630  5965494 153 + 20921866 I

a score=-42006.000000
s ce10.chrX             3945352 157 + 17718866 --------------------TTTTTCTCAGATTAAAAAATGAATA--------CTAAGA-AACTGCGTAGGAAG-CAAG-CCGTTTGATCTAATTAG------TAGCTTCAAACG-----------------------------AGTTCA-AAAAACTGGTCTT------TCAGATTAAGAATAAAAT--------ATTTGTT-------------CCAGATGTAATA-----------------------------TGACTTTC-----------------AACAAG-----------------CAGGttttt
s cb4.chrX              9074501 199 + 21540570 --------------------TctttcccaaaattcaaaaaaaacatgtcATCTCATGAATACATGTGTGGGAAG-TGAACCCGTTCAATC--TCAAT------CTACTTAATGAGTGCGTGACTAA------------------ATTCAA-GAAGAATA-----------TCTGCACCAGATTGCAAT--------GTTT----------------TCGGGTCTTTCGTCTCTG----ATGAAAATA-------GGATAAATTTATGATGGT----------AATAAAATGCGA-----------cctaaatga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975678 154 -  4500979 --------------------tcttttcgaa----tgaaaaaaacatgcaATTTTAAGGA-AAATGTGTAAGAAGCTAAGCTCATATTGTG--ATGAA------AAACTTTCT-AGCCTGCAATTAA------------------ATTAAATGTATTATA-----------TTAGC-------TGCAAC---------------------------------------------------------------------TGAATTTTATATTGT----------CACAAAAAGTCA-----------ATTAGTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5965647 296 + 20921866 aattcttcatcagaattcAGTCGTTTCG---------AAAGAACACGACATTTCCGAGA-AAGAGTGTGAGAAG------CCGTTCGATCTAATAAGAACTgctgatttgaaaaaagcgagGTTGAGAATTCAACGGGGACTATGCTtta-caaaatta-tttttcgacatTGGGTtcaatttagaaaaaatgtatgATTCATAGATTTTACAATGAAAGATCTATCAGTTTTGTGtaagaaaaacgttttcataaacaattttttggaggtttGCTTTAAaagcaatattttatgatTGAACCGATTGCACAT
i caeSp111.Scaffold630  I 153 C 0
s caePb3.Scfld02_0      2263267 235 +  4147112 TGATTCTCAGACTAGTTCAGTctgttcgag------aaaaaaacaaacgatttctgaga-aaatgtgTGGGAAG------CCGTTGAATTTAATGAG------TGACTTAGAACGCGCCAGATTAA------------------ATTTCG-TTAGattagtttttcgaattcattctCGATGTAAAAA--------GGTTCA--------------ACGGGACTAATAATAC------AGAAAACTATAAATCTGAattgttttcggaaaatt---------aacaaaaaattgagagcgA----AGTGTTCAG
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18142  161584 338 -   343467 I

a score=37004.000000
s ce10.chrX             3945509 470 + 17718866  
s cb4.chrX              9074700 635 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   975832 420 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5965943 493 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2263502 550 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  161922 468 -   343467  
i caeJap4.Scaffold18142 I 338 I 2560

a score=-23644.000000
s ce10.chrX             3945979  82 + 17718866 TGAGATACGATGTGTTTTTTTTTTAGA-------ATTTTGGAATTGTCTTT-------TAGATG----TAAT-------------------AAATTAGAAAGGGCATGGGGGTTTTCAC-
s cb4.chrX              9075335 114 + 21540570 CAA------AAATGCCTTTCGTTTACAGGATTCCtctttctcattttgtttAAATTGGGAAAAGTGCACTATGGAATGTCTTTTCTACGTTGTATTCTCTGAGGAATTGGAGTGTTTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   976252  42 -  4500979 ca---------------------taca-------ttttttttgtttcgctT--------ACAGATTCATTAT-----------------TAGTat-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5966436  77 + 20921866 CCA------AATTGCGATTCGA-Ccga--------gtttttggttttgttt-------gACATGTAC-TAAT-------------------ATATCACTTGTGGAAAGGgcattttcac-
i caeSp111.Scaffold630  C 0 I 20
s caePb3.Scfld02_0      2264052  52 +  4147112 CAG-----TACTTGAGTTTTTC-CCCA------CTGATTTTTATTGtattt-------gagaagttt-tgat------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=-11921.000000
s ce10.chrX             3946061  68 + 17718866 -AAAAAAAGTTATCACAAATTTACTAGAAATTTA-----------------------GTGAGGT-----GTGATGGATGC------------AGAGGAAATTACTCAAA---------------------
s cb4.chrX              9075449 124 + 21540570 -AAAGGAATATGTTA-----TTTACAAAAGTTGGAACAATACTTTTGCataatttcaatgaaaagtGTAATAATAGAGACCATTGATTTTCGACTTGGAATTACTTTAAATCTTTAAAATatacctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   976294  58 -  4500979 -----gaatttgaaa-----cttttaaaaatttg------------------ttttaggGAGAA--GTCATAATTAAAAC--------------------------TAAAT----------------AAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2264104  54 +  4147112 tAAACTAGTTTGttagaatgtttcaaaaagtatg------------------------tGAAAA-----CTAAGAGAAAC---------------------------AAA--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e caeSp111.Scaffold630  5966513  20 + 20921866 I

a score=-64952.000000
s ce10.chrX             3946129 224 + 17718866 --CTTAATATATGGGC---------------TTC--TAAGTGAACATGT------ATAAGAGAAAACGCCGAAAAATGTAGAATAAATGTATA------------------------TAGAAAATTGTTC-----------AATTAGTTTGaaaataatatttattttattgaa---aa---------a---------------tttGGAAAAAAACAGATTGAAATGTTTTTGTAATTTTCAATTTTATA-------------------------------ACATAATTTTCACAAATTTCCATTTTGATTAAATAAACAGTTCATTAGATTTGCCTGAAT
s cb4.chrX              9075573 284 + 21540570 atcaaaaattattgat---------------ttt--taaatgaatatttcagccaa--------------aaaaactacaggg-------gtacaacgattcgggggtacaagagGGTATaaagtgattt------------aggggtacaaaatccatgattcgggggtacaa---aatgtTTTAGCAAGTTGTATTTTTGTACTTCTGAATTGAGATTTTGGT---TCTAAATAGTTCGCAGTTTCGTttagatgaaaaatttcaactcaGCGGTaaggaaaataaattttaccCGGG--CATTTTGTACCCTCGAATCAttaattttgtacccctaaat
i cb4.chrX              C 0 I 84
s caeRem4.Crem_Contig0   976352 133 -  4500979 TTTCGGAATTAgttat---------------ttcaataattgagtattc--------------------------------------------------------------------tgaaaaatgtttc--------------gaattcaaaacaaataac------atataa---aa---------atgttat---------cctcta-------------------tcaaaaaattctctgttc-----------------------------------aaataattgtga-----------------------aatagtttattttgaaT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5966533 107 + 20921866 -------------------------------TTT--GAAATGTGTTCTC------A--------------AATA-----TGaac------gtt------------------------tgaaaaaagattg------ttACTAAAATGTATATAATTTGTGGC---------tga---ga---------aatatat---------tttcta-------------------------------------ctttcttctcaaa----------------------acatTAAT----------------------------------------------------
i caeSp111.Scaffold630  I 20 C 0
s caePb3.Scfld02_0      2264158 191 +  4147112 TTTCCTATCTCCTGCTAgtactcacttttttttt--gaaat------tc------a--------------aaaaagcccAGAACAA----ATA------------------------CGTAAAGGGCTCGGATAACCTGCTAGACTGTG-AAAATCAGTaat---------caaaatga---------agtgaat---------tttttatagaaagTTTTTTAA----TGATCAACTCATGAGTTTCatttatataaaa----------------------atattattttgc-----------------------------ctatttt------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=-11359.000000
s ce10.chrX             3946353 63 + 17718866 AGCACTGGCACTGACCTTGGTACTGACTGAAAGTTCTGATTACCGCGCGACTTTAAGAGGGAA---
s caeRem4.Crem_Contig0   976485  7 -  4500979 ------------------GG---CCACT--------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5966640 33 + 20921866 -------------AGCTGGC---CGAGTGATAcgta--atca---------------aaaaaactg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2264349 44 +  4147112 -----------cgaaattga---tgaCTGATATTTA-GAACAACG-------TTGGGAACAAACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9075857 84 + 21540570 I

a score=-48658.000000
s ce10.chrX             3946416  873 + 17718866  
s cb4.chrX              9075941 1025 + 21540570  
i cb4.chrX              I 84 I 390
s caeRem4.Crem_Contig0   976492  671 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5966673  730 + 20921866  
i caeSp111.Scaffold630  C 0 I 72
s caePb3.Scfld02_0      2264393  872 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=-5900.000000
s ce10.chrX             3947289  61 + 17718866 --TGTTAATCTCAAAAATCTCTATAGTCGGAAAAATCACTAAAGTTATC----------------------------------TATCTATGATTAAT---------------------------------------------------------------
s caeRem4.Crem_Contig0   977165  62 -  4500979 --agtaaatCATGGAATTT-------------AAATGACTATGCATGT-----------------------------------TTGTTAAGACGAATA------------------------------------------AAACtgcatttgaa------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      2265265 147 +  4147112 taagtaAATCATGGATTTT-------------AAATGGCTATTCATATATTTGCACATCTGCTACACTTGAAACGTTTCCAGGTTTTTAGAACTAAAACTCAGTTTGGAACAGTAgtgaaaatctgagaaaaatgaatgcaaaatgaatttaaaatgaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I
e caeSp111.Scaffold630  5967403  72 + 20921866 I

a score=51929.000000
s ce10.chrX             3947350 224 + 17718866 GACAAAATTCACG-T---ATTCACAGTGTGTTCCGATGCTGT-----------GTCACAGATAG------------ACGTCAGCTGTGAGCCGGTTCATCCGATACA-------GCGGAATGATGACGCAGGCCTTGCAAAACACTGGCTACGCAGTTTTTTCAATTTTAAGGGAGCTC---GGAAGGTTCAAACGGAAGAG---GCAAATAGTGATTGTG-----CACAGACTGTCCAGCCCCACGGGAACAATACAGA------GCCACCCAC
s caeRem4.Crem_Contig0   977227 254 -  4500979 aatgaattgcaT--TCAAATGCGAAATGTGTTCTGAAGCCTTTAATTCTCCTGAGAACGGATAGACCACCA--AACACGTCAGCTGTGAGCCGGTTCATCCGATACAACGCATTACGGAATGGTGACGC----------AAACTCTGACAAAAAG--ATTTTTGCTGGTGGGGGGAAACGTAGGAAagttcaaagagaaaaaag-gcaaaCAGTGATTGTGCCACCCACA-ACTGTCC---GCCACGTGAGGAATGCATACAATAAATCACCCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5967475 257 + 20921866 GATGAAATGAATG-TTAAATACGACACGTGTTCTGAAGCCATTAAATTTACTAAGAACGGATTGGTCGTCCTTAATACGTCAGCTGTGAGCCGGTTCATCCGATACAACGCATCACGAAATGATGACGC----------AAACTCTGgcaatgagttttttttgctgttAGTGTAGCacg--gaaaagttcaaaaagaaaaaaacgcaAATAGTGATTGTGCCACCCACA-ACTGTCGC--TCCACGTGAGGTACGCATACAAT--ATCATCCAC
i caeSp111.Scaffold630  I 72 I 126
s caePb3.Scfld02_0      2265412 251 +  4147112 -accaaatgaatgaagaaatatAACATGTGTTCTGAAGCCATTGAATTTGCTTAGAACAGATTGGCCACCA--AACACGTCAGCTGTGAGCCGGTTCATCCGATACAACGCATCACGAAATGATGACGC----------AAACTCTTCctaag-gttttttttgc--ttcgaaGAGTCCG--GGAaagttcaaagagaaaaag--gcaAACAGTGATTGTGCCACCCACA-TCAGTCCTG-TCCACGTGAACAATGCATACAAT--ATCACCCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I

a score=-1541.000000
s ce10.chrX             3947574  4 + 17718866 GCAA-------
s caeRem4.Crem_Contig0   977481  4 -  4500979 -------Acaa
i caeRem4.Crem_Contig0  C 0 I 117
s caePb3.Scfld02_0      2265663 10 +  4147112 GCATTGTATA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I
e caeSp111.Scaffold630  5967732 126 + 20921866 I

a score=617.000000
s ce10.chrX             3947578 20 + 17718866 AGAATTGGAAATAACAATGA
s caePb3.Scfld02_0      2265673 17 +  4147112 AAAATT---AATATCAGTGA
i caePb3.Scfld02_0      C 0 I 160
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I
e caeSp111.Scaffold630  5967732 126 + 20921866 I
e caeRem4.Crem_Contig0   977485 117 -  4500979 I

a score=0.000000
s ce10.chrX             3947598 651 + 17718866  
e caePb3.Scfld02_0      2265690 160 +  4147112 I
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I
e caeSp111.Scaffold630  5967732 126 + 20921866 I
e caeRem4.Crem_Contig0   977485 117 -  4500979 I

a score=501.000000
s ce10.chrX             3948249 9 + 17718866 TTGAGTTGT
s caePb3.Scfld02_0      2265850 9 +  4147112 TTGAGTTAA
i caePb3.Scfld02_0      I 160 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9076966 390 + 21540570 I
e caeSp111.Scaffold630  5967732 126 + 20921866 I
e caeRem4.Crem_Contig0   977485 117 -  4500979 I

a score=-3000.000000
s ce10.chrX             3948258 1 + 17718866 --G
s cb4.chrX              9077356 1 + 21540570 -g-
i cb4.chrX              I 390 C 0
s caeRem4.Crem_Contig0   977602 1 -  4500979 -G-
i caeRem4.Crem_Contig0  I 117 C 0
s caePb3.Scfld02_0      2265859 1 +  4147112 C--
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e caeSp111.Scaffold630  5967732 126 + 20921866 I

a score=61609.000000
s ce10.chrX             3948259 410 + 17718866  
s cb4.chrX              9077357 486 + 21540570  
i cb4.chrX              C 0 I 686
s caeRem4.Crem_Contig0   977603 464 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5967858 479 + 20921866  
i caeSp111.Scaffold630  I 126 C 0
s caePb3.Scfld02_0      2265862 686 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=-8816.000000
s ce10.chrX             3948669 35 + 17718866 TCAAAAATACT--------ACTTCAGCAGCCGGTTGGCTAGCA--------
s caeRem4.Crem_Contig0   978067  5 -  4500979 ------------------------GTTAG----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5968337 34 + 20921866 -------TGGTGggagaagaatttttcaat-------atggCATTATT---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2266548 29 +  4147112 -------TACT--------AATTCTTCAGC-------Ctacccattttcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9077843 686 + 21540570 I

a score=-61368.000000
s ce10.chrX             3948704 312 + 17718866 AAATGAAAT----AGGAA-------------------------AAGCGGAAGAGAATATTA----TGAAAACACATGCGTCATTTTTAAGCAATG---------TTATGAAATTTAAAAAAAAAAAAGAAAACAAAGAGAAAACTTTTAGACTCATAAAAATGAATAGC------------TTTT--------TGTTTCAAGATGAC-------------------------------------------AACTGAAAAA-GGGAGAGTATATATCAGACCGATCA------------------------ATAAAAAAAAACTCA-----AAAGC--------------------------AGAATA---------TTGTCTT--------ACAAACAATTAACCCTGTAAATCTTTGAACGGAATTGGTAAAATCTATGATTTTTTAATAAAAAATTACCCAGAAACTAATAAAATTGAAAATAAAAAT--
s cb4.chrX              9078529 297 + 21540570 AACTAGAAC----TGGAACAGCGACAAAGAGTTTGTAAAGTCCAAACTGTGAAAAACCAAGCTTTCAAAATCTTCT---ACAACTCCAAGAAATA---------TGATGAAATATTAGtgaacaaaaaagacaaaaaacaacatttcgaAACTCATAAAAATGAATGCT------------CATTCTcaactcttttcaaaaa--acatatgCATTCTCA------------------------------AGtcgaaaag----------------------ttta--------------------------------------------aaaaa--------------------------agaaca------------------------aaaaattgttggtttttttttgtttcgca-------------------GCTCTTTTCACCCTGGAAtcaccaaaaatcaaaaagaaacaaaacaaaaaaga
i cb4.chrX              I 686 C 0
s caeRem4.Crem_Contig0   978072 242 -  4500979 ----AAAAC----AGGAA-------------------------ggactg-aaaaaatgtgggtttcaaaatatcct---tcaactttgaaaaata---------tgacgAAACCCgcgagagaaaaa-----caaaagcgAAGTTTCGAAGctcataaaaatgaatgac------------catt--------gtttcagaaa-tactcatctatttt---------------------------------gttttaaaa----------------------ctta--------------------------------------------gttag--------------------------aaaaaa------------------------a---------------tctatgtAACACATTAAA------------ACGCTTTATGTAACCAAGAATTGT--AAACGCAAGAGCGAAATTTAtgtacacat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5968371 295 + 20921866 -AAAAGAATGAGGTGAAA-------------------------ACAACGCATAA-----------CAAAAGTGTCT----CAACTTAGAGAAATA---------TTATGAAATAAGTGA-------ACAGa-gga----aaagttttgaaactcataaaaatgaataac------------tatt--------gcttcaaaaaataaatgttttttctcttttttttgttc-------------------tcttgaAAAGAACCATGTATCATACAAAGTTTCTCA------------------------GTGAACAACAACAAA-----GAAAC-----ATAACCAAAAACCAcg-----aagaaacagaaacagcTG------------ACGAATATTTAATTTCTCAACGCTTTTCA-------------------GCTGTT-----TGTAGTCTTAATgaaatttat---------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2266577 432 +  4147112 -aaaaaaattatgggaaa-------------------------aaaaaacaaaaaccgtaa---tcagaaaattataggacaaatttggaaaacaagcCTGTGGTTGAAGGAGAAGTAATAATAATActga-tgaaatcaaaattatacTACCCA-GACTGGGAATAACACTCATTTCTCAAGTT--------GTTATCAAGAATATACACCTGGCTTCAGAATTatatcaaaaacagaaatggaacaagaattgaagaaaaacaaaactttcctAACATTCTTCAACTTCGAGCAATATGATGAAATacgagaacaaaaacaaagtttcgaaactcataaaaattgatgaccattgtctcaaaaaacatgtgctcttgctttttttccaaaagaaccATGTATCATCCAAAGTTTCACg-------------------tcgaacaaaaaagaaacatgaccAAAAATCAACAAGGCAGGAGCTgaatat--
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=-7707.000000
s ce10.chrX             3949016 29 + 17718866 GCTGCAAAATTG---------------------------GCTAAA---ATTAAAGTCGG
s cb4.chrX              9078826 57 + 21540570 aattgaatattt--GATGGCTcacaacattttcagctgtttgaCACGCAGTTGAATCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   978314 57 -  4500979 ttttcaattttttcggtcGTTTCTGCTGTTTGcaacaaaactaca--tagcaaaatcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5968666 15 + 20921866 ---------------------------------------tctgaa--aaccaaaat---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2267009 38 +  4147112 I
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=24335.000000
s ce10.chrX             3949045 157 + 17718866 ----TAAATGAATAA-------TTTCAAATTTTAATTC-AAATTTAGGCCAG---------AAA--CAATTTCGTTTTGAAAAATATAAGCGCCGACTATGACAATTA-AGTGAGGGGGTCGATGCTGATAA---ACT--GGCGC-CGACAGGAATTTCCAAAAAAAACGTCATTCTGATTA--GAGTA----------------
s cb4.chrX              9078883 168 + 21540570 AAAccaaaaggcaaaaaa---------------------aattttaggtcaatcaaaaatgaaattttgtgagTTTCAGAAGTGCAGAC------CGTGTGCTGATTA-GTT--GGAGGTCGATGCTGATAATTACTCTTGGCGC----CAGAAATTTC---GTCAAACGTCATACAGATTACCCCGCGCCTACACACTAGAGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   978371 181 -  4500979 aaactaaaagaataaaaac---CATAACgtcttttttggaattttaggccaa---------aaa--ctatgaattttcgaaattcaaactCTAAGTGTGTGCTGATCG-AGT--GGGGGTCGATGCTGATAATTAAAC--GGCGCCCGACAGGAATTTC---AAATAACGTCATTTAGATAA--TAGCGCCTACACACTAGAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5968681 146 + 20921866 ----------------------tctgacgttttttttcgaattttaggccag---------aaa--atgagagtttCTGAGGCGTAGGCGCAATAAGAAGACTGATTAGAAG--GGGGGTCGACGCTGATAATT-AGT--GGCGCCCAACAAGAATTCA---ACATAACGTCATTCAGATTA--GAGCA----------------
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_0      2267047 165 +  4147112 ----taaaaaaattcattcgaatTAAACCGGGTGATTCGAAATTTAGGCCAAT--------AAA--CTGTGAGTTTCTGAGGCGTAGGCGCGGTGTTAGTGCTGATTA-ATT--TGGGGTCGATGCTGATAATCGAAT--GGCGCCCGACAGGAATTCA---GCATAACGTCATTTTGATTA--GAGCA----------------
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=1994.000000
s ce10.chrX             3949202 39 + 17718866 ---------------------GTTTCAAGTCACAACCGGAGAGCACCATCGCACATACTA---
s cb4.chrX              9079051 36 + 21540570 ---------------------ACCTCAAGTCACA---GGGAGGTGC---TGTACAAACTGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   978552 36 -  4500979 ---------------------AGTTGAAGTCACA---GGGAGGTGC---TCAACGAATTATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2267212 54 +  4147112 GCACCTGTACACACTAGAGTGACTTCAAGTCATA---GCAGAGTAC---TCCGCATACTA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e caeSp111.Scaffold630  5968827 26 + 20921866 I

a score=91783.000000
s ce10.chrX             3949241 437 + 17718866  
s cb4.chrX              9079087 444 + 21540570  
i cb4.chrX              C 0 I 505
s caeRem4.Crem_Contig0   978588 463 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5968853 423 + 20921866  
i caeSp111.Scaffold630  I 26 C 0
s caePb3.Scfld02_0      2267266 432 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=1213.000000
s ce10.chrX             3949678 3 + 17718866 CAC
s caeRem4.Crem_Contig0   979051 3 -  4500979 TAC
i caeRem4.Crem_Contig0  C 0 I 308
s caeSp111.Scaffold630  5969276 3 + 20921866 TAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2267698 3 +  4147112 CAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531 505 + 21540570 I

a score=1175.000000
s ce10.chrX             3949681 16 + 17718866 GTTGCTGGACAAACTT
s caeSp111.Scaffold630  5969279 12 + 20921866 G----AAGGCAAACTT
i caeSp111.Scaffold630  C 0 I 260
s caePb3.Scfld02_0      2267701 12 +  4147112 G----TAAGCAAACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531 505 + 21540570 I
e caeRem4.Crem_Contig0   979054 308 -  4500979 I

a score=251.000000
s ce10.chrX             3949697 4 + 17718866 ACTA
s caePb3.Scfld02_0      2267713 4 +  4147112 ACCA
i caePb3.Scfld02_0      C 0 I 415
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531 505 + 21540570 I
e caeSp111.Scaffold630  5969291 260 + 20921866 I
e caeRem4.Crem_Contig0   979054 308 -  4500979 I

a score=0.000000
s ce10.chrX             3949701 1483 + 17718866  
e caePb3.Scfld02_0      2267717  415 +  4147112 I
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531  505 + 21540570 I
e caeSp111.Scaffold630  5969291  260 + 20921866 I
e caeRem4.Crem_Contig0   979054  308 -  4500979 I

a score=677.000000
s ce10.chrX             3951184 7 + 17718866 AGATTTT-
s caeRem4.Crem_Contig0   979362 8 -  4500979 AGATTTGT
i caeRem4.Crem_Contig0  I 308 C 0
s caeSp111.Scaffold630  5969551 7 + 20921866 AGATTTG-
i caeSp111.Scaffold630  I 260 C 0
e caePb3.Scfld02_0      2267717 415 +  4147112 I
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531 505 + 21540570 I

a score=-1539.000000
s ce10.chrX             3951191 8 + 17718866 TCTCCTCT-----
s caeRem4.Crem_Contig0   979370 8 -  4500979 -----tgtcttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5969558 4 + 20921866 ----TTGT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2268132 8 +  4147112 TTTGCTGT-----
i caePb3.Scfld02_0      I 415 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I
e cb4.chrX              9079531 505 + 21540570 I

a score=94.000000
s ce10.chrX             3951199 8 + 17718866 TTCCTTCA
s cb4.chrX              9080036 7 + 21540570 -tttcttc
i cb4.chrX              I 505 C 0
s caeRem4.Crem_Contig0   979378 3 -  4500979 -----ctc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5969562 8 + 20921866 CTTGTCCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2268140 8 +  4147112 CTTCTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  162390 2560 -   343467 I

a score=206369.000000
s ce10.chrX             3951207 362 + 17718866 ATTTTTCACTAACAATACATCGCCACTGAGTGCAt----ctacttcttattcttcttcattttctccgtct-----tttt-ttct-tttcctGCCCCATCTCAATCGCCTCGAACACTTTCATTCAACTGTCAACCTCCCCGTACGATTTATGTCAGTTCGGAGGCCCC--------CCAATCCGAT-------CACCATCTGAACCTTGTTACCATATTTT---TTGCCACCCAGGCTGACG----TTGTC-CGTATGAAAATGACACGACGAGGCGTCGT----CCGACAATCAAACGCTTTACAGC-TTT-TCTCGCC------ACCACATTCGCTGAGCATTCCGC--TTATTTTATTACCACTTTCCACT------TGCTCATGCTTATTA-TTACTAACTGTTCAGAGCT-----A
s cb4.chrX              9080043 370 + 21540570 atttttcactgCCAAAACATTG--ATGCACCACCGCTACCAcctccttcgtcttcttcctttccatcgtct-----tcttcttcc-tctttt---------------cctcgaacactttcattcAACTGTCAACCTCTCCGTACGATTTATGTCAGTTCGGAGGCCCTCCCTCGGGCCGTCCTGATCAGCGGCCACCATCTGAACCTTGTTACCATATTTTTTCTTGCCACCCAGCC---------ATGTCGCTTCAAA---CAATCCGACGAGGCGTC----------AAACTTAACGCTCTACAGC-TTTATCTCGCCCATCCAACCACTTTTACTGAGCACTCCGCA-AATTTTTATTAT--CCAACCGCTACTCGAAGTACATGCTTATTA---AGTAACCGATTATTGTTGCAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   979381 336 -  4500979 atttttcactgccAAAACACAG--ACCGAGTGCAG----CACctcc-tcgtcttct------------tct-----tcttattccttcttct---------------cttcgaaCACTTTCATTCAACTGTCAACCTCTCCGTACGATTTATGTCAGTTCGGGGGCC----------CCAATCCGATCAGCCACCACCATCTGAACCTTGTTACCATATTTT---CTGCCACCCAGCCTGGAGGGCTGTGTC-CGAACAA---CGACACGACGAGGCGGCC-------GGCAACAAAACGCTTTACAGC-TTT-TTTCGCC------ACCACTTTTAGTGAGCACTCCGC--CTTTTTTATTA---CCAACCACT--CTGATGCCCATGCTTATTA---ACTAACCGTTTATTGTT-----G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5969570 327 + 20921866 ATTTTTCACTGCCAAAACACAG--ATCGAGTGCAC-CACCActacctcctcctccttc-------tcttct-----tcttcttct-tttcct---------------cctcgaACACTTTCATTCAACTGTCAACCTCTCCGTACGATTTATGTCAGTTCGGG--------------CCAATCCGATCAGCCACCACCATCTGAACCTTGTTACCATATTTT---CTGCCACCCAGCCTGG------CTGTC-CAAACAA-----------CGAGGCGTCG------CGGCAGCAAAACGCTTTACAGC-TTT-TCTCGCC------ACCACTTTTACTGAGCACTCCGC---CTTTTTATTGC--CCAACCACT--TGGAAGCCCATGCTTATTA---ACTAACTGTTCATCGTT-----G
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2268148 350 +  4147112 ATTATTCACTGCCAAAACACAG--ATCGAGTGCAC-CAccacctccttcttcttcttcttcttcttcttctccttgtcttcttct-tctttt---------------cctcgaACACTTCCATTCAACTGTCAACCTCTCCGTACGATTTATGTCAGTTCGGG--------------CCAATCCGATTAGCCACCACCATCTGAACCTTGTTACCATATTTC---CTGCCACCCAGCCTGGGT----CTGTC-GGAACAA-CGCGTCCAGGCGAGGCGTCG-------GGCAACAAAACGCTTTACAGCTTTT-TCTCGCC------ACCACTTTTACTGAGCACTCCGC---CTTTTTATTAC--CCAGTCACT--CGGAAGCCCATGCTTATTA---ACTAACTGTTCATTG-T-----G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  164950 323 -   343467 ATTTTTCACTGTCACAAca------------------------tccttctccttctccatctccttctcct-----tcttcttct-tcatct-------------tgcCTAGAACACTTTCATTCAACTGTCAGTCTTTTCGCACAATTTATGTCAGTTCGGAG-------------GCAATCCGATCAGCCACCACCATCTGAACCTTGTTACCATATTTT---CTGCCACCCATGCTGGCCGCCTTCTTC-CGAACGA------CATGACAAGTCGTCCCTTGGTCGGATGGGACGTGCTTTACAGC-TTT-TCTCGCA------G----ATTTTGCGAGCGCTTCGCCTTCTTTTTATTA---CCAA-CACT------------TGCTTATTAACAACTAGCTGTTTATAGTC-----A
i caeJap4.Scaffold18142 I 2560 I 269

a score=4784.000000
s ce10.chrX             3951569 6 + 17718866 TGTGAA
s cb4.chrX              9080413 6 + 21540570 TGAGaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   979717 6 -  4500979 TGTGAA
i caeRem4.Crem_Contig0  C 0 I 302
s caeSp111.Scaffold630  5969897 6 + 20921866 TGTGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2268498 6 +  4147112 TGTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I

a score=-1131.000000
s ce10.chrX             3951575 5 + 17718866 CACCA---
s cb4.chrX              9080419 5 + 21540570 ttcta---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5969903 5 + 20921866 ---CACTA
i caeSp111.Scaffold630  C 0 I 288
s caePb3.Scfld02_0      2268504 2 +  4147112 ---CA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I
e caeRem4.Crem_Contig0   979723 302 -  4500979 I

a score=-2193.000000
s ce10.chrX             3951580 31 + 17718866 ATATGAATTCT---------AGTTCCATAAATATTTCGCT
s cb4.chrX              9080424 38 + 21540570 --tcaaaatttttcgagaaaatttccagaaataatTCGTT
i cb4.chrX              C 0 I 1301
s caePb3.Scfld02_0      2268506 13 +  4147112 ----GAACTTTATCGCT-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I
e caeRem4.Crem_Contig0   979723 302 -  4500979 I

a score=-335.000000
s ce10.chrX             3951611 300 + 17718866 -CATACCAAGAAA---------TTAGATAATGTG---------AATGTGACAAACCAAAAACAACAATTTTCAAGTGTTTT--GCTGTCTCAGTAAAAATCCTTTTGGTTTTTTCGGCTCCAAA---------AATTATTTTCAAAATAACAATTCTGTGTGAACCTACAATAAATCAGCGTCAGATGAGCA-CTTTGAG----TTAGAGCATGGTCGACCTGAACATTTTTCAGGTAATATTTTCTTGAAAATAGTTTTCGTGAAAATTTTTCTTCTCTAGTATAAGTATTAAAATCTCTTTTAAAACTTTTAAAGGTGTTTTCAAAAATACAT
s caePb3.Scfld02_0      2268519 268 +  4147112 TCGTCTtaagaaaaacagaattctagaaattttggcAGAActcaatatgaaaaa---aaaacaggaatcTG-AAGTGTTTTTGGGTACTTCTTTACCAATC----TGCTTCTTACCATTTTAAAGgagtttgaaagttttttcacaata----ttttttg---------------------------aagtatcTTTGAGGGTATTAG-GAATAGTGTCTCTGGTTTTAAATGACATGGTATTTTATTCGAAA----------GAAAAgtataaattttgaacataaGCA---------------AAActtt--atggttttttgaaaaatgaat
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18142  165273 269 -   343467 I
e cb4.chrX              9080462 1301 + 21540570 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I
e caeRem4.Crem_Contig0   979723 302 -  4500979 I

a score=0.000000
s ce10.chrX             3951911 48 + 17718866 ATTCGAAATAATGGAAAAATGCACTGACAAAAAATGAAAAAACTGACA
e caePb3.Scfld02_0      2268787 45 +  4147112 I
e caeJap4.Scaffold18142  165273 269 -   343467 I
e cb4.chrX              9080462 1301 + 21540570 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I
e caeRem4.Crem_Contig0   979723 302 -  4500979 I

a score=-4059.000000
s ce10.chrX             3951959 486 + 17718866  
s caePb3.Scfld02_0      2268832 376 +  4147112  
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I
e cb4.chrX              9080462 1301 + 21540570 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I
e caeRem4.Crem_Contig0   979723 302 -  4500979 I

a score=460.000000
s ce10.chrX             3952445  93 + 17718866 GTATTAATTTT----------------ATCAATTTACTTA-----ACAAACTGCTGAGTCATCAAACAGAGT------TTTAAATTCTTTCATCATATTTTCAAGTTTCGTGAGATATTC------
s caeRem4.Crem_Contig0   980025 106 -  4500979 GTCTTAATTTTATCAGATTCTTTCATAATCACTTTTTCTACACTCAGAAGCTTATGACTCAATG--------------TGTtaatttttctctcctttct------ttcgcaaaagttttgcattc
i caeRem4.Crem_Contig0  I 302 C 0
s caePb3.Scfld02_0      2269208 100 +  4147112 GTCTTATTTTT----------------ATCACATTTCCTTCTCTCAGAAGCTTATGACTCAATACCCAATATTTCTGTTCTCAATATTTCTAGGTTTCCT-----CTTCTTTAAAGTTTTC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I
e cb4.chrX              9080462 1301 + 21540570 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I

a score=-1421.000000
s ce10.chrX             3952538 18 + 17718866 ----TTTTTTTCTTGTTGCTTC
s cb4.chrX              9081763 18 + 21540570 --tttttgttttctctctcC--
i cb4.chrX              I 1301 C 0
s caeRem4.Crem_Contig0   980131 18 -  4500979 --aattttctttttttttcc--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2269308 18 +  4147112 Acaatttaataatttttt----
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18142  165273 269 -   343467 I
e caeSp111.Scaffold630  5969908 288 + 20921866 I

a score=8978.000000
s ce10.chrX             3952556 54 + 17718866 GTTCCAAATAGTG----TCCATCGTCCGATATTGCGACGAAAAGAAAA---TGCGACG------TTT
s cb4.chrX              9081781 54 + 21540570 TTTCCAAGCTGTG---GTCGATTATCCGA-------TCAAGAAGAGAA---GTCgaccaaataaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   980149 58 -  4500979 gttccCAACAGTGTCTATCCATTATCCGATTTTGCGTTAAGAGGAAAG---ATGCATT------GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5970196 54 + 20921866 gtTCCGAATAGTG----TCTATTATCCGATTTTGCGtagaaagaaatg---atgaaat------gaa
i caeSp111.Scaffold630  I 288 C 0
s caePb3.Scfld02_0      2269328 57 +  4147112 gatcCAAATAGTG----TAGATTATCCGATTTTCCGTTAGAATAAACGATAATGGATG------GAA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18142  165273 269 -   343467 I

a score=87573.000000
s ce10.chrX             3952610 118 + 17718866 AGCTCATCA-CCTCCTGATTTGCGTCGCTAAGAGACTATTAATGAGGTGATTTATTGTCGCATTCTC------AACGTCTCCCCCGGTG-TG--------CCC--------------------TATCCG-TTTTGATA----ATTACGAAAACAAAAC-A
s cb4.chrX              9081835 130 + 21540570 agttcatCACCTTCCTGATTTGCGTCGCTAAGAGTCTATTAATGAGGTGATTTATTGTCCAATTCTCATCGCAACCGCCCAA-----CGATGCGCCCTCACTC--------------------TATCCG-TTTCAAta----actacaaaaacaaaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   980207 114 -  4500979 AGCTCATCA-CGTCCTGATTTGCGTCGCTAAGAGTCTATTAATGAAGTGATTTATTGTCCCATTCTC------ACCGACCCC-----CGGTG--------CTC--------------------TATCCG-TTTCAACA----ATTacgaaaacaaaac-a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5970250 120 + 20921866 agcTCATCA-CTTCCTGATTTGCGTCGCTAAGAGTCTATTAATGAGGTGATTCATGATCCAATTCTC------AGCGACCCCTTCGATGATG--------CCC--------------------TATTCG-TTTAGACA----ATTaaggaaacaaaacaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2269385 121 +  4147112 AGCTCATCA-CATCCTGATTTGCGTCGCTAAGAGTCTATTAATGAGGTAATTTATTATCCACTTCTC------ATCGACCCCTCCGATGATG--------GCC--------------------TATCCGTTTTCGACA----Tttaggaaaacaaaacaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  165542 145 -   343467 AGCTCATCA-CCTCCTGATTTGCGTCGCTAAGTGTCTATTAATGAGGTGATTTATAGGCCCATTTGC----CAGTCGACCTCTGGCGCGGTG--------GTCTACTTATTCACTTACCTAGTTATCCT-TTTAGACACTTTGttaggaaaacaaaaaa-
i caeJap4.Scaffold18142 I 269 I 89

a score=-4572.000000
s ce10.chrX             3952728 61 + 17718866 AAAGCCACAAA--------AGTTGCTTCCCGTTAG------------------------AACAAAGATTTCATTTTCTATCAATTTTGTTTCG
s cb4.chrX              9081965 66 + 21540570 aaagccACAAA--------CTTCCAATTCCCTTCTAACCGTTTCGCTCAATTTAGA-------------ACGTTGATG-----TTTCGAATC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   980321 68 -  4500979 aaagcCACAAc--------ttttcattctcatttt----------ctctacacagaa--aaatgagaacacGTCGTTT-----TATTGTATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5970370 74 + 20921866 aacgcTAAAATAGTtgtcccttt--tttcaattcg-----------tcAAAATCGAA-CAACTCAGAACGCACAGTTT-----TATTGTATCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2269506 70 +  4147112 aatccctcaat--------tttt--attcaatttg--------cCTTCAATACTAAACCAATTTAGAACGCACTGTTT-----TATTGTATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  165687 89 -   343467 I

a score=243841.000000
s ce10.chrX             3952789 511 + 17718866  
s cb4.chrX              9082031 483 + 21540570  
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   980389 480 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5970444 459 + 20921866  
i caeSp111.Scaffold630  C 0 I 139
s caePb3.Scfld02_0      2269576 454 +  4147112  
i caePb3.Scfld02_0      C 0 I 162
s caeJap4.Scaffold18142  165776 467 -   343467  
i caeJap4.Scaffold18142 I 89 C 0

a score=0.000000
s ce10.chrX             3953300 2 + 17718866 CA
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e caeJap4.Scaffold18142  166243 0 -   343467 C
e cb4.chrX              9082514 12 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I
e caeRem4.Crem_Contig0   980869 0 -  4500979 C

a score=-2583.000000
s ce10.chrX             3953302 41 + 17718866 AAG-----TTAAAACCGCTAGATTCAGATC-AATTATT-GT----------TTTGCGC
s cb4.chrX              9082526 47 + 21540570 AGGATCTGTTTCAACTGAcagatttttatt-tattagtCAT----------TTTGCGC
i cb4.chrX              I 12 I 147
s caeRem4.Crem_Contig0   980869 30 -  4500979 --------ttccatccGTTAGGTTCTTGTTGTATTCGT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  166243 45 -   343467 ------------ATGCTAAAATTTCTTATT-TATTAGTCACCGATCGCATGTTTGCGC
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I

a score=-586.000000
s ce10.chrX             3953343 20 + 17718866 AGTTTTCCTTGCAATTTTTT
s caeRem4.Crem_Contig0   980899 20 -  4500979 GTTTCAACTGacagattttt
i caeRem4.Crem_Contig0  C 0 I 106
s caeJap4.Scaffold18142  166288 14 -   343467 -----agcctctatttttt-
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I

a score=91.000000
s ce10.chrX             3953363 1 + 17718866 T
s caeJap4.Scaffold18142  166302 1 -   343467 t
i caeJap4.Scaffold18142 C 0 I 8
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I
e caeRem4.Crem_Contig0   980919 106 -  4500979 I

a score=0.000000
s ce10.chrX             3953364 610 + 17718866  
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e caeJap4.Scaffold18142  166303   8 -   343467 I
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I
e caeRem4.Crem_Contig0   980919 106 -  4500979 I

a score=251.000000
s ce10.chrX             3953974 4 + 17718866 AAGT
s caeJap4.Scaffold18142  166311 4 -   343467 aagc
i caeJap4.Scaffold18142 I 8 C 0
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I
e caeRem4.Crem_Contig0   980919 106 -  4500979 I

a score=436.000000
s ce10.chrX             3953978 3 + 17718866 AGC
s caeRem4.Crem_Contig0   981025 3 -  4500979 AGA
i caeRem4.Crem_Contig0  I 106 C 0
s caeJap4.Scaffold18142  166315 3 -   343467 aga
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2270030 162 +  4147112 I
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I

a score=1296.000000
s ce10.chrX             3953981 6 + 17718866 TTCTTA
s caeRem4.Crem_Contig0   981028 6 -  4500979 TCATTA
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      2270192 6 +  4147112 tccttt
i caePb3.Scfld02_0      I 162 C 0
s caeJap4.Scaffold18142  166318 6 -   343467 ttttta
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9082573 147 + 21540570 I
e caeSp111.Scaffold630  5970903 139 + 20921866 I

a score=4435.000000
s ce10.chrX             3953987 38 + 17718866 TCTCATTTTCTCAACTTTTTTTCT--CATAAGTCCCTTCG
s caeRem4.Crem_Contig0   981039 37 -  4500979 tttaagttttttattcattttttt--taatgatttc-ccG
i caeRem4.Crem_Contig0  I 5 I 2
s caeSp111.Scaffold630  5971042 37 + 20921866 tttcaatttttttctaatttttta--taaaagttCG-CCG
i caeSp111.Scaffold630  I 139 I 2
s caePb3.Scfld02_0      2270198 37 +  4147112 tgtctcttttttatccatttttga--aagcaGTCCG-CCG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  166324 32 -   343467 ------tcttttgacaatttttttcccaaaagtCTC-CC-
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9082573 147 + 21540570 I

a score=108895.000000
s ce10.chrX             3954025 473 + 17718866  
s cb4.chrX              9082720 502 + 21540570  
i cb4.chrX              I 147 C 0
s caeRem4.Crem_Contig0   981078 478 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5971081 448 + 20921866  
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2270237 489 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  166356 411 -   343467  
i caeJap4.Scaffold18142 C 0 I 714

a score=-8748.000000
s ce10.chrX             3954498 122 + 17718866 TGGCAG-ACGTAT---GAACGTTTCGAA-----TTGGGAGCCGAAA-------------GCCGCCGTTTCTTCTCATAAAATCG-TTTGGTTTTATGAGATTCGAGAGTTAGCTGCAAACTTTTGAACGCGAGAAAAGTTTCTTT
s cb4.chrX              9083222 121 + 21540570 TTGCag-aacaat-----attttttgagaacgTTTGAGAAATCGcctcaaaaatctgaagaagCCG-----CCTCATAAAATTTGTTTGGTTTTATGCGATTTgagatt-----ggaaattttcggagatgtgaaaa--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   981556 107 -  4500979 ttgcag-aaaaat---gcacttttcggG-----TAGAGAAGCCGTAT------------AACGCCG-----CCTCatgaaagtt-ttctgttttatgaGATTcaagaac-------aacttttt---gacgGGAAAG-TTTCTTT
i caeRem4.Crem_Contig0  C 0 I 130
s caeSp111.Scaffold630  5971529 103 + 20921866 TGGCAGCAAAAATTGAGAAcgttttgaa-----tcaaaaagcCAAA-------------GATGCCG-----CTTCATGCAATCG-TTTTGTTTTATGAGATTTGAGATT-------TAGCTCTT---GGAGTGTCTT--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2270726  33 +  4147112 TGGCAG-AAAAACTTAGAACGTTTT-------------------------------------------------------------------------GAATCGAGA--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  166767 714 -   343467 I

a score=-382.000000
s ce10.chrX             3954620 26 + 17718866 TAAAAAAGTGCATATTTTGATACAGC
s cb4.chrX              9083343 11 + 21540570 ----aaagtgcatat-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5971632 26 + 20921866 TAAAAAAGTGCATTCTAAGATAGAAC
i caeSp111.Scaffold630  C 0 I 133
s caePb3.Scfld02_0      2270759 15 +  4147112 -----------ATCCAAAGACGCCGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  166767 714 -   343467 I
e caeRem4.Crem_Contig0   981663 130 -  4500979 I

a score=-33649.000000
s ce10.chrX             3954646 733 + 17718866  
s cb4.chrX              9083354 416 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2270774 444 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  166767 714 -   343467 I
e caeSp111.Scaffold630  5971658 133 + 20921866 I
e caeRem4.Crem_Contig0   981663 130 -  4500979 I

a score=875.000000
s ce10.chrX             3955379 4 + 17718866 AACT
s cb4.chrX              9083770 4 + 21540570 GACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5971791 4 + 20921866 aaCT
i caeSp111.Scaffold630  I 133 C 0
e caePb3.Scfld02_0      2271218 0 +  4147112 C
e caeJap4.Scaffold18142  166767 714 -   343467 I
e caeRem4.Crem_Contig0   981663 130 -  4500979 I

a score=75351.000000
s ce10.chrX             3955383 246 + 17718866 ---------------------AAAAAATAATGTTTTATCGAATTAGATCGAATTATGCTCATAATCGGAAGTAGCTTGAGAGC---------CGTCCAAGATGCT-TAATCGGAAATTGTTGCTGAGTTACCAAGAAAGTTTATGAC-TTTTTTACGACATCCGCAAATTCGAAAAGCAATTCTATCGCATTTTAGAGGAAGCTGCGGTGGTTG-AGGAAAGTAGAGAATCAAGCGAACTTCTT------------GT--------TTCCTC---CACTGAATACC------TTGTGCT--TTGGTTGAA
s cb4.chrX              9083774 242 + 21540570 --AAATGA----------TAACAATAAC--------------TTCTATAGGATCATGGTCCAAACCGGAAATGTCCTAAAACCTTCTCTCTTCCCTTAAGATGCTCTAATCGGAAATCGTTGCTCAGTAACCGAG--AGTTTATGAC-TTTTTTACGACATCCGCAAATTCGAAAAGC----------------------------GGTGGTTagaagaaaatcga-----aagagaacttcttttctgttttctaCTTC------TTCCTCTTAATCTCCGTTTCATTTTCCAGCGCTCCTCGGTTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   981793 260 -  4500979 aaaaaagaaagttgttCCTAGTAAAAACA-------------TAACATCGAATTACACCCATAACCGGAAGAAGCTTAAAAGC---------CTACTGAGATGCTTTAATCGGAAATTGTTGCTCAGTTACCAAG--AGTTTATGACtttttttACGACATCCGCAATTTTGAGAAGCAATTCAGTCGCATTAGAGAAGAAGCTGTGGTGGTTGAAAGATAGAAGA--ATCAAGcgacgttctt------------cttc------ttctttttgttcccAATTCC----TCCTGTGCT--TTGGTTAGA
i caeRem4.Crem_Contig0  I 130 C 0
s caeSp111.Scaffold630  5971795 241 + 20921866 --------AGAATACTTTTATGGAAAACA--------------TATCCCTAATAGCACCCATAACCGGAAAGAACTTGAAAGC--------TTTTCTAAGATGCTCCAATCGGAAATTGTTGCTCAGTTACCACG--AGTTTATGAC-TTTTTTACGACATCCGCAAGATCTAAAAGCAATTCGATCGCATTAGAGGAAAAGGAGCGGTGTGGT--------TGGA--ATCAAGCGaacttctg------------tttc------tttctccCTCTATGTATACT------TTGTGCT--CCGGTTAGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2271218 245 +  4147112 --------------TTCTTAGGAAGAACA-------------TTAACGTGGTTTATATCCATAACCGGAAAGAGCTTGAAAGC--------TTTTCCAAGATGCTCCAATCGGAAATTGTTGCTCAGTTACCAAG--AGTTTATGAC-TTTTTTACGACATCCGCAAAATCGAGAAGCAATTCAGTCGCATTAGAGAAAGAGCTGCGGTGGTTTTA--GAAGTGGG--ATCAAGcgaacttctt------------tttcaacccatttctc---ttctgaattcc------cTGTGCT--TCGGTTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  166767 714 -   343467 I

a score=128576.000000
s ce10.chrX             3955629 202 + 17718866 CCTCGTTGGTCTAATGTGTGATTGCCAATGAGACCATCAATCCAGATTTACGAGGTGATTCGCGAAAAGGTGTGTGTG-----TGCTC---------------CCAGCAGCATGGG--CTTCTGCCTGGAAGCTCATTGCTCCAATTTTTATATATGAATCCTTC-CTTTTATTTTACGACTTGTAATCGATTCACT--TT----------------TTTTAGCACATAATAACTG-------GGTGACG
s cb4.chrX              9084016 215 + 21540570 TCTCGTTGGTCTAATGTGTGATTGCCAATGAGACCATCAATCCAGATTTACGAGGTGATTCGTGAAAAGGTGTGCGTGTGTGCTGCTCGAATGCTCTT------------CAGAAG--CTCCGG---GC-----------GCACATTTTCAT---TGAG--CCCC-GCTTTATTTTACGACTTGTAATAGATATACCAGttcgtttttattttctcttccTGTCAGATTATAACTGGAACCC-CATGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   982053 204 -  4500979 TCTCGTTGATCTAATGTGTGATTGCCAATGAGACCATCAATCCAGATTTACGAGGTGATTCGTGAAAAGGTGCG---------TGCTCGAAT-CTCTT--AGAACCGATGCATGGG--CTCCTGCACAC-----------TCCCATTTTCAT---TGAG--CCAC-ACTTTATTTTACGACTTGTTATAGATCtaccagtt-------------tttttctgtcacATAATAACTAGCA-CC-CGTGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5972036 209 + 20921866 TCTCGTTGGTCTAATGTGTGATTGCCAATGAGACCATCAATTCAGATTTACGAGGTGATTCGCGAAAAGGTGTGTGCG-----TGCTCGAATGCTCTG---ACTCAGAAGCATGGG--CTTCTGCACACAA-------ACTCCCTTTTTCAT---TGAG--CCTC-GCTTTATTTTACGACTTGTGATAGATCTACCAGTT----------------TTTTGTAGCATAATAACTGCCA-CT-GGTGACG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2271463 209 +  4147112 TCTCGTTGGTCTAATGTGTGATTGCCAATGAGACCATCAATCCAGATTTACGAGGTGATTCGCGAAAAGGTGTGTGCG-----TGCTCGAATGCTTCT---GAGCAGGAGCATGGGCTCTTCGGCACAC----------TTCCCATTTTCAT---TGAG--CTTC-GCTTTATTTTACGACTAGTAATAGATCTAGCAGTT----------------TTTTGTAGCATAATAACTGCCA-CCGGGTGACG
i caePb3.Scfld02_0      C 0 I 927
s caeJap4.Scaffold18142  167481 197 -   343467 CCTCGTTGGTCGAATGTGTGATTGTTAATGTGATCATCAATTCAGATTAACGATGTGATTCACGAAAAGGTG-----------TGCTCAAAGAgagaaggaaaaaagaagcatgGG--CTCCTGGCTTT---------CCTCATTTCTCCAT---TGGG--CCTCTGCTTTATTTTACGAGTTGTCATAAACTCACTA-TT----------------TTTTGTCACATAATAGCTT-------TGTGG--
i caeJap4.Scaffold18142 I 714 C 0

a score=-23935.000000
s ce10.chrX             3955831 102 + 17718866 GTGCCCCACTCTAATCCCAC--TCTTGCAAAAAATTCCCCATTA---------CTTTCTGAAAAGT------------------------------------GGAAAACAAAAACC----AAA-------------------------------------ATTCATTTTTTTTGT-------------------------------------------TTCACT-----TCTATAAAA
s cb4.chrX              9084231  98 + 21540570 TTTCGAAATGCCTTCCATACCTCCTCG-------TTCTCAGTTAATCCTCT--TCTTCT-------------------------------------------GGGAAGCAGTCAGC---AGAA-------------------------------------ATTTGcgttttttct-------------------------------------------atattt-----tccaaaaaa
i cb4.chrX              C 0 I 67
s caeRem4.Crem_Contig0   982257 149 -  4500979 TTTGCAAATTTCTTTCCGAC--CCTCG-------TTTTCAGTTAATCCTTTCGTTTTCT-------------------------------------------TGGAAATAGTCAGTTaggaaa-------------------------------------atttgggttttttgttCACGTCAACcggaaacaaagaaaaaacaaatgggTTAGGAGAATAGTTCTGAACTgaagaaa
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold630  5972245 171 + 20921866 TTTTCAAATAGATTTTCTAC--CCTCG-------TTCCCAGTTaatcctttctctttctcagaAGCAGTCAGTTagcaaaaaattgtttttcgcCGGAAGAAAGGAAACAAATAAGTGTGAAATGCAGTCCATAGCGTAGTAGGTGTTACTAGTGATCatatatctcttttttct-----------------------------------------------tt-----ctc------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  167678  98 -   343467 TCGGCTGATAATAATCCTAC--------------TCTTCAAATAATCCCAAG--------------------------------------------------TGTAGATAACTAGT-------------CTGTACtttattagtttttatt---------atttcttttttctat-----------------------------------------------tt-----tgttaaA--
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2271672 927 +  4147112 I

a score=94581.000000
s ce10.chrX             3955933 256 + 17718866 ---------------------------------------------------------------AAATGTTGCAATTCTTGATCAATTAG--AAAGATGAAT--GAAAAAAAAAAGAAG-------CATATGCTGTTCATCAGTT----------------TCACTTATCTGTC------AATGCCTGCAA---CTCCATCTATTC----T-TTCTC-CGTCATCATTTTTGTTTCCCAAAGACTT-TGGGTTCTTCTTCAGTCACGTCTCTTGCGTGTGCGTGTGTGTCGG----CCCACCTCTGCCAACCATCACTCTTATTATGACATTTCCTTTTCACTTTT--TTTCCCATTTAAAAAATTTTC
s cb4.chrX              9084396 242 + 21540570 ---------------------------------------------------------------TTGTGTTGCAAATCAGTGAC-----AAgagggaaaaattgagaaaaaaaacgaaa-------cataTGCTGTTCATCAGT---------------------TTATCTGTC------AGTGACTGCACAAtccccatttttct----tctcttctcatcatttttttt------gaaagtcttcTGGGTTT---TTGAGAGAC-----------TCGGGCGTGTGTCGGAGGACCCACTTCCACCAACCATCACTCTTATTATGAcatttctttttcactttttttttctcattttcaaaaatttc
i cb4.chrX              I 67 I 1096
s caeRem4.Crem_Contig0   982436 224 -  4500979 ---------------------------------------------------------------TCATGTTGCAAATCACTATCTGTCTATCAATGACaaggataagaaaaaaacgaaa-------cataTGCTGTTCATCAGT---------------------TTATCTGTC------ATTGCCTGCAA---CTCCatctttct----t-tcttc-catcatttttttt----tcgaaagtctt-TGGGTTC---TTGAGTCAC-----------TCGTGCGTGTGTCGG----CCCACCTCCAACAACCATCACTCTTATTATGAcacttc--------------tttctcattttcaaattttg-
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  5972416 227 + 20921866 ----------------------------------------------------------------aatgtTGAAAATCACAATCAGTCAATCTAcgacaaat---gaaaaaaagagaaa-------catatGCTGTTCATCAGT---------------------TTATCTGTC------ATTGCCTGCAA---CTCCATCTTTCT----T-tcctt-catcatttttttc------caaagtcTT-TGGGTTC-----GAGTCAC-----------TCGTGCGTGTTTCGG----CCCACCTCCAGCAACCATCACTCTTATTATGACATTtccttctcacttt---tttctcattttcgttATTTG-
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      2272599 214 +  4147112 ---------------------------------------------------------------AAATGTTGCA------AATCAGTTTATCCCTGACAagt---gaaaaaa--cgaaa-------cataTGCTGTTCATCAAT---------------------TTATCTGTC------ATTGCCtgcaa---ctc------ttt----t-ttctt-tttcaatttttt-------gaaagtctt-tGGGTTC---TTGAGTCAC-----------TCGTGCGTGTGTCGG----CCCACCTCCAGCAACCATCACTCTTATTATGACATTTccctctcacttt---ttt-tcattttcaaatttcg-
i caePb3.Scfld02_0      I 927 I 11
s caeJap4.Scaffold18142  167776 332 -   343467 AGAAGAATCCACTAAATCAGTCAGACACACAATATGAAAGGGACCACTGGTTttatcaaattttaattttctatttctCAATTatcacgtgaaaaaaaaac--gagaaaaaagagcaagtGCTCTTATGTTCTGGCCATCAGTCACCACTCGGCTTCAAATCATTTATCTGTCCAGTTGAGTCACGGCAC---AAtcggatttttgaaat-ttttt------ttttgtttgaaaagaaaagttgT-TGAATTC--CTTAAGTCAC-----------TGATGTGTGTGC--G----CCCACCTCCTGCAACCATCACTCTTATTATGACACTTCCTTCGCGtcagt--tttttcattttcaaaaatt--
i caeJap4.Scaffold18142 C 0 C 0

a score=-49422.000000
s ce10.chrX             3956189 183 + 17718866 ----------ATGCACTCCTGCAGAAGGTTCTGAGAATCTTTG-GAATTCATTTGGTTGAATGGTAATCTATC----------ATTTT-----GAGTACCAAAAATTTGAAATCGAATCTTTTTTTTTG-------------------AAACTCTCTAACGGAATATTG------GCAGTGCTCTA--AAAGGTT---------------GAAAAAATTTTATTCAATTTTTAATTCGAATTTTTAATTTG
s caeRem4.Crem_Contig0   982660 108 -  4500979 --------------------------atgcCTC-----------CATCTGAGTTTCCCG---------CCTTC----------Attgt----------tc---------------------ttttctta-----------------------tttttgaaaatgaagtg-------cACTGTTTTGTGGTAGTTT-----------------GGGTAGGTCACAAGACTA----TTCGGTTTT-----GTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5972659 147 + 20921866 ----------TTGCATT---------GTTCCtcactgttttca-aaattaaggTTTTTGATCAGAAAACGGTC----------ATgat----------ccgaa------------------tttttttg------------------gaaactcaTGAGAAATAAGACA------CCTGAATGTTA--ATAAGAC--AGAGATCCATTTTGAAGATAATTTTCTAATTCc------------------gta
i caeSp111.Scaffold630  I 16 C 0
s caePb3.Scfld02_0      2272824 222 +  4147112 ----------CTTCATt---------gttcctcttcattttcgtAAACTGTGGTCTATGGTCAAGTGACTGTCGGATCACAAGATGATTTTTTAgatatcgaaaa-ttgagactg---ctctttttttgtggtAGTAGGAATGAGTTGAGGCTATCAGAATATATAACAGAGTCTCCACAGTTTTATGGTAAAACTAAGGGTTTCATTACAAAAGGAGTTCGTAAAGTCC----TTCGGGTTTCt--tgta
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18142  168108  99 -   343467 ctccaGAGAGCTGCATG---------ACTCCACTTCATTTCTCTCTACCCttttttt-----------CATCC----------GTTAC----------CCCAGaaaatgatgtt-------ttttttcg------------------------------------------------------ttc--ttatatt--------------------tagtttg-----------------------------
i caeJap4.Scaffold18142 C 0 I 76
e cb4.chrX              9084638 1096 + 21540570 I

a score=-26632.000000
s ce10.chrX             3956372 154 + 17718866 AA----------------------ACTCATATTCAATTATCATGCTCGACAAT-------------------------------ATTGTATGGAACCTAATACGGAAAGTACTGTAGTTAAGCACACTGATTCATTATTTATAATATCTATT----TGCACTC-----TCTCACAAT-------------------------------ATTGCATGAGCTCTATGAGCGACTTTCCAACTT-C---AAAAT
s caeRem4.Crem_Contig0   982768  84 -  4500979 AA---------------------------------------------aacgaa--------------------------attcaatttttcggaacTTAAAA--------GTtaatttga---------------tg-----aatttctaTGGTC-GATACAC---------AAGAT-------------------------------------------------------ATACAAATTTC---AAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5972806  88 + 20921866 ga---------------------------------------------aaaaag--------------------------------tttttgaaa-----------------------------------------ta-----aaccCCTAGA----CGTACAA-----TTATGAAAT----------------------------CTTGCTGTTCCACTGAAACTGTTGACTTTACAGTTCTC---ATCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2273046 230 +  4147112 aagtttcaaaatgacgtttgaaatattca-----aattgttttaatTGAAAAGTCAGAATCCACATATCATGAAAACtgattgcatttttgaaaaatcaata--------gttgAATTTGAGCG---TTGTTCATTG-----AATGCCTCTAATACCGTactcagcttttttgaaattcagcaAGAACATCAATTATGGAGTGTGTTTGTTGAACTGTTGTAATAATCTAGTTTACAACTTACTTGATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  168207  76 -   343467 I
e cb4.chrX              9084638 1096 + 21540570 I

a score=-40971.000000
s ce10.chrX             3956526 260 + 17718866 TCTGCATTACTTTTTACTTACCCAAATTCAA---AAAGTTTTCCCGTTCTAAACTGAGCTTTTTTTAAT-------------GTCCCATCAAGTA--TTTAAAAAAATGT-------ATTACTACATTACACAATTGGCCA------ATTTACTTTCACA----------TTAAAACACATAAAATGCCAAGCATGCATCTTCCCAGTG--ATTGCACATT-ATTGTA----------------A-TTCTTTCTGATGATTCATAACAGCAACTTTCTTACAATGAGC---CAGTCAATG--TTGTACG-CCGCC--------CAAAAATGG--AGC
s caeRem4.Crem_Contig0   982852 249 -  4500979 ACCTTATTagtcataacttttttaaatgacg---taattgt-----------------ttctttttagcACTTTTGACATTTGAACCCTCGGCAG--gtcaattatatttttctaaaaatattacA--ACTTTCTT----------------TCGGGACg----------tcacatct-gaaaattgctgtGTATGTTTGTTGTTTGCT--GATGCTGATTCATTGCG----------------CATGCCATCTCAGCTTCCACCACC--AATTTTCACACGATGAGCAGTCAGTCAATG----GTACA--TGAC--------TAAAGATGAGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5972894 185 + 20921866 Acaaatt-----------------------------atcat-----------------ttcttACAAACA------------GAACCATCCGA------------------------ATCATGGCA--ACCCCACT----------------------------------TTGCAACC----AATTTTTGtacatgttttttgtttgtt--gcCGCTGAATCAT--------------------C-CCTTCTTCTGctgtcttctttcaaaatattctcaCAATGAGCAG-CAGTCAGTG-AATGTACCATTGACGGGCACGAGAAGGGGAg-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2273276 240 +  4147112 ACAAAGTTTACAACACCTTCTCTCAA--------TAATCATACCCAAAACATCCCCA-TTATTATCAACA------------TGATCATCAAC------TACATACACT--------ATTATTACA--ACCACACTGCTC---------CTCTTTACACG----------TCttaacccaaaaatttttgtgcatg-tttttgtttgtt--gtcGCTGATTCATTGGG----------------C-TCCCATCTTGCCGTTTTCTACC--AATTTTCTCACAATAGGCAATCCGTCAGTG----GTACA--TGAC--------TAAAGATGG-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  168283 262 -   343467 TCAGCATTGCTCACTTATTTTCTCATCCCAATATTAAATAT-----------------GTTATTTATGTA------------GATTGAGAAGAAAATGTCGTACACATA--------AACATGTGA--AAATTGTTGAGCAAACGATAGTTCTTACAACGTACCCTTCATTCTCGTCT----GCTTTTTGTGCATG-TTGTTATTTGTTTGTCTCCTGATTCATTTTGGCTCCACAGCTCATCTC-CTCCCTCACGTCTCGGCCAACC--AAT-TTCTCACAACCAG-----AGTAAATGTGCTGCACA-TCGAG--------C-------------
i caeJap4.Scaffold18142 I 76 C 0
e cb4.chrX              9084638 1096 + 21540570 I

a score=148247.000000
s ce10.chrX             3956786 280 + 17718866 -TCCATGAGCGGAAATCATTTTGTGACAGCTTGGGCTTGAGATTAAAACGCCTG--CCA---TTCTTCTTC-----------CCCCACCGCCTC------AAGCACC------------AACCATTTCAAAAGATAAACTTGGATTATTTTGGCACCC----CGC---------------ACAATGAGTGGCC------------TCCCGCGGCC-GCCGAAAAGTGATCCTCCGCC--TCCTTTTC---------CCGTTTCTTT-CCCATTGAGTACTCGTTGCCCCATATGATAGTGGCCAATCAACAATTATTTGCCAGCAGCTCA-TGGTTTTTA-----GGCAAATTTATTGAGGAAGT-
s cb4.chrX              9085734 311 + 21540570 -TCcacaaaaagaaataattttgTGACAGCTTGGACTCGAGATTAAAACGCCTGcccca---tttttcttttg---tgCCGTTTTTGCCGCGCCTTCAAAAAGCATCCCGGCTTCTTTCGACCATTTC-AAAGATAAACTTGGATTATTTTGGCACCC----TCCCCCCACACACATATAACAGTGAGTGGTCTTTCTT------TTCCGCACTT-GCCGAAAAGTGATCCTCC-----------------------CGCAGTTTC-CTCT--GAGTACTTGGC----CATGTGATAGCGGCTAATCAGATAATATTTG-CTGCTCATCC-AATTGGTTATT---AGAAATTTGATCCAGGAAGT-
i cb4.chrX              I 1096 C 0
s caeRem4.Crem_Contig0   983101 285 -  4500979 ---AGCAAAAGGAAATGATTTTGTGACAGCTTGGGCTCGAGATTAAAACGGCTG--cca---ttctttttt---------gcttttgcCGCCTC------AAGCACC-------------ACCATTTCAAAAGATAAACTTGGATTATTTTGGCACCC----CGC---------------ACAATGAGTGGCC------------TCCCGCAAGCAGTCGAAAAGTGATCCTCCGCC--TCTTTTTT-CCCGCGC-TCGTTGTCTCTCTCA--GAGTACTTTCC---ACATATGATAGTGGCTAATCAACAATTATTTGTCGGCTCTTCC-AAGTGGTTATT---CCCGAAATGATCCAGGAAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5973079 294 + 20921866 --------gggaaaataattttgtgaCAGCTTGGACTTGAGATTAAAACCACTg--ccatttttcctcttt-----------tcttcccgCCTC------AAGCACC-------------ACCATTTCGAAAGATAAACTTGGATTATTTTGGCACCC----TGC---------------ACAATGAGTGGCCGCCCCGCA----AGCCGCCGAT-GCCGAAAAGTGATCCTCcgcc--ttcattttctccgcCCGTCATTCTTTT-CTAA--GAGTACTCTTC-CTCCATATGATAGTGGCCAATCAACAATTATTTGACGGCTCATCC-AAGTGGTTATGGCGGGGAAAATGATCCAGGAAGT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2273516 272 +  4147112 --------GCCGAAATAATTTTGTGACAGCTTGGACTCGAGATTAAAACGCCTG--CCA---TTCTTCTTA-----------CTCCCCCGCCTC------AAG---C-------------ACCATTTTGAAAGATAAACTTGGATTATTTTGGCACCC----TGC---------------ACAATGAGTGGCCGCCC--------GCCCGCAGTC-GCCGAAAAGTGATCCT-------TTTATTTT-TGCggccgtttttctttt-ctaa--gaGTGCTCTTA---CCATATGATAGTGGCTAATCAACAATTATTTGACGGCTAATCCAAAGTGGTTA-----GGACAAATGATCCAGGAAGT-
i caePb3.Scfld02_0      C 0 I 171
s caeJap4.Scaffold18142  168545 302 -   343467 CCCTACAAGACGAAATAATTTTGTGACAGCTTGGGCGCGAGATTAAAACGCCTG--CTA---TTCGTCTTTTGGCCTAACCGCCTTTTCTCCTT------GAG---C-------------ACATTTTCTAAAGATAAACTTGGATTATTTTGGCACTCGTTAGAC---------------GCAATGAGCGGCCGCCCGTCGTTTCTCTCGCCGCA-GCCGAAAAGTGATCCTTCTCCCGCCTTCTTTCTCCACCCGTGGAGGTTTT-TCGA-------CTCGCT---GCATATGATAGTGGCCAATCAACAATTATTTG-CGGCTCTTTC-AAGAGGATTCC---AGTGTAAT-----AGGAAACT
i caeJap4.Scaffold18142 C 0 C 0

a score=-23550.000000
s ce10.chrX             3957066 72 + 17718866 AGATTTTGTTAATACTCTCGTTAAAA-------------------CATTGAATGTTGTTTTTAATTTGAAATAAAT---AATACCATACTGTTT
s cb4.chrX              9086045 88 + 21540570 ------ATgtagtgagatatataggcaaATTAGGAAACATGTGGCTGTGAGAAACTATTTTTAGTTTAGATGAcatctttgaaatttgatattt
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   983386 44 -  4500979 ------AGAAACAACAATGGATAGAC---------------------------------CCTAACTCA-----------TGATCtgtactgttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5973373 17 + 20921866 --------------------------------------------------------------AGTTTT-----------CCAACTGGAAA----
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  168847 58 -   343467 ----------------------------GGTGGAAACAACCTCTGTACTATCCGGTGGTGTTAATGCAACA--------AAGACTATATTCTTG
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I

a score=-9991.000000
s ce10.chrX             3957138 51 + 17718866 TATAGCTGCGT---TAAATAATTGAAACTTAC------------ACGAATTCT----AATTGTGCTGACT
s cb4.chrX              9086149 63 + 21540570 GTGAGCAGC-------AATAATCAAAAGCTGTCTTATTTTAAATACATATTCTTATAAATAATTCTGAAT
i cb4.chrX              I 16 I 52
s caeSp111.Scaffold630  5973390 26 + 20921866 --------------------------------------------CTATATACTAGAAAATGGTTATTACA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  168905 18 -   343467 ----------TAATTGGAAAATTGGAAg------------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I
e caeRem4.Crem_Contig0   983430  0 -  4500979 C

a score=-1509.000000
s ce10.chrX             3957189 33 + 17718866 GAGTTATACGTTTTTTCTTTAAAGAAAGAGTAA
s caeSp111.Scaffold630  5973416 29 + 20921866 TAGT--TACAGTATTTCTTATAAGAAGAA--AC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  168923 17 -   343467 ---------attttttatttagaaat-------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I
e cb4.chrX              9086212 52 + 21540570 I
e caeRem4.Crem_Contig0   983430  0 -  4500979 C

a score=-8014.000000
s ce10.chrX             3957222 43 + 17718866 TATTTCCAGC-----------------TAATTTGTTTCGAACATGTGattaaata------aacta
s cb4.chrX              9086264 61 + 21540570 ttttttctcctaatCAAGTTGAGGACCCAAACGTTTTGG-----GTGattaaaccgaaaaaaatta
i cb4.chrX              I 52 I 22
s caeSp111.Scaffold630  5973445 27 + 20921866 TGTTTG---------------------CAATTTCTTTTG-----GT--TTAAGTC-----------
i caeSp111.Scaffold630  C 0 I 7
s caeJap4.Scaffold18142  168940 26 -   343467 --tttgtaa------------------cagaaaattctg-----aaaattc---------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I
e caeRem4.Crem_Contig0   983430  0 -  4500979 C

a score=-33013.000000
s ce10.chrX             3957265 153 + 17718866 ttttcattataaatatctgaaaataaaa--ctttaaaattttacttatttttttaaatGGCCGTTGACA----ACTTCAAAAAACAATTGCCTAGTTTTAGCTAAACTCTCCCGTT-------TTGGCCACTTTCAGTTGCCGAAATTGGGGATTTTAGCTAGGCC
s cb4.chrX              9086347 143 + 21540570 ttgttattag-----tctgaaaattgtaaccgtaaaacctgtaattg-------aagggccccttaaCTTTCGACTTTGAGTAagtttttctcagttttaat--aaatatattttt-------tcagcagac--agatttttgatatctctcgtgGAAGTCGGAAT
i cb4.chrX              I 22 I 9
s caeRem4.Crem_Contig0   983430  88 -  4500979 tttttcttagaaGTATATGAAGTTTg----cttaaaaaccaaaa-----------------------------actatGGCAAA---------------ACC--AATTCGACTACT-------TCGGTAGCC---------------------TAGCAGCTGGGCC
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold630  5973479  59 + 20921866 TCAATTCTAAATAAATATAAACAT------ATTCTGATTCGTAA-----------------------------AACAttagaaa-----------------------------att-------tcagctC------------------------------------
i caeSp111.Scaffold630  I 7 C 0
s caeJap4.Scaffold18142  168966  82 -   343467 -tccTACTTACAGTAGATAAAGCATCTATTTTTCTTATGCTTATATG--------------------------ACCATATAAAC--------------------AATTTCCTTATTGTTTACATTAGCC-------------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I

a score=-12476.000000
s ce10.chrX             3957418 69 + 17718866 ACTAAAAACAAAAAAAAAA----TGTTTTTCTA-----AAAATTGTTTTTTTGGGCTAGGAAATTTGTATATTTGAGA
s cb4.chrX              9086499 69 + 21540570 ----AAAACCACCATATATAGGGGGCTCTTTTAAAGCCAATACCG-TAGTTAGGTTTAAGAAAC---CATGTTGGAA-
i cb4.chrX              I 9 C 0
s caeSp111.Scaffold630  5973538 22 + 20921866 -------ACTACaataact----gtttttcttA---------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  169048 51 -   343467 -TCCAAAAATGAGAGAGAA----GAATGTGGCG-----AAAACAGAGTTCTTgggcaattt-----------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I
e caeRem4.Crem_Contig0   983518 40 -  4500979 I

a score=-43949.000000
s ce10.chrX             3957487 157 + 17718866 TTATTTTAGGTGTATACCTTTAAAATACCCAGAATTTTCACTCCTTCTTTTGACAAAATA--AATGCTCCGAAACCA--------CT----------ATTCCCATTTTCACGTTCAA--TCGTTGCAAATTACCGCTAGAATGTCTTGCGCAACCGAGTTTGCAAATACTTTTTCACAG
s cb4.chrX              9086568 155 + 21540570 -TTTTGGTGTTAGATTCTCTCAAGACAACC-----TGCTATTTCTTTTCTTAACGCAACA----TCTACCGTAACCAAT-TTTTGGTGATATCACAAACACCTGTGTTTACTTTGTCCTTGTTGAAGAAGAACACGCAACGCaattttggaaac--attttta--------cttca---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   983558  96 -  4500979 ---------ttacttttttt---gaccTCG-----TATAATATC---------CGCAACA---TTCTTGCGCAACGA----TTTgat----------acat-----ttcattttttc-------------aaaattctgtcCAACAGTTGCGTC--ACT--------------------
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold630  5973560 111 + 20921866 -------------------------------------ACACGTC---------TGGAACACACCGCTCTTTTAACCA---TCTTGAT---------AACACCTGTGCTTGCTATTTA--CCCTCAGCAATAACATGCAATAGGCCCTACGcaac--agttttcaaa---attttca---
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  169099  77 -   343467 ----------------------------------ttaaaatattttct-----tgCGACAGTCCTGTTGCGTCATCACCATCCGCAC----------Gtctctctgcttaccttctc-----------------------ttgcccttt------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2273788 171 +  4147112 I

a score=143854.000000
s ce10.chrX             3957644 561 + 17718866  
s cb4.chrX              9086723 670 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   983654 568 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5973671 613 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2273959 594 +  4147112  
i caePb3.Scfld02_0      I 171 C 0
s caeJap4.Scaffold18142  169176 528 -   343467  
i caeJap4.Scaffold18142 C 0 I 36

a score=10475.000000
s ce10.chrX             3958205 28 + 17718866 AACAAAGACGTCC---CAGTGGGCGGGACTA
s cb4.chrX              9087393 23 + 21540570 GACAAAGGAC--------GTGGGCGGagtca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   984222 28 -  4500979 aacaaagaattag---cagtgggcggagtta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5974284 23 + 20921866 aacaaaga--------cagtgggcggagcta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2274553 31 +  4147112 aacaaagaaaagtttcCAGTGGGCGGAGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  169704 36 -   343467 I

a score=17139.000000
s ce10.chrX             3958233 32 + 17718866 TCACCTTTC--AAAAATTCTATTTCTGAACTTTT
s cb4.chrX              9087416 31 + 21540570 ac---tttcaaaaatatcctATTTAGGAACATTC
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   984250 32 -  4500979 tcgtatttc--aaatattctatttctgaactttt
i caeRem4.Crem_Contig0  C 0 I 173
s caeSp111.Scaffold630  5974307 32 + 20921866 tcgactttc--aaaaattctatttctgAATCTTT
i caeSp111.Scaffold630  C 0 I 150
s caePb3.Scfld02_0      2274584 32 +  4147112 tcgtctttc--aaaaattctatttctgaattttt
i caePb3.Scfld02_0      C 0 I 175
s caeJap4.Scaffold18142  169740 32 -   343467 Tggtctttt--aaaatttttcttcatcATCTCCG
i caeJap4.Scaffold18142 I 36 C 0

a score=334571.000000
s ce10.chrX             3958265 1117 + 17718866  
s cb4.chrX              9087464 1093 + 21540570  
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   984455 1139 -  4500979  
i caeRem4.Crem_Contig0  I 173 C 0
s caeSp111.Scaffold630  5974489 1082 + 20921866  
i caeSp111.Scaffold630  I 150 C 0
s caePb3.Scfld02_0      2274791 1065 +  4147112  
i caePb3.Scfld02_0      I 175 C 0
s caeJap4.Scaffold18142  169772  979 -   343467  
i caeJap4.Scaffold18142 C 0 I 542

a score=-742.000000
s ce10.chrX             3959382 7 + 17718866 AGAGGCT
s cb4.chrX              9088557 2 + 21540570 AC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   985594 7 -  4500979 ACTGACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5975571 7 + 20921866 GAGGACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2275856 7 +  4147112 AAGGAct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  170751 542 -   343467 I

a score=117208.000000
s ce10.chrX             3959389 195 + 17718866 CGGAATGATTGAATGACACGCTCTT-----------CTCT--ATAGTGCAGCTGTTTGATTG--TCACAGAAGCGGCGGTAGACGAAAATAAATGAGTTGAATTGAA--AGAGAAAAA-------GGTCC----AC--CGATTATTCGAAAAATAGGAAAAAGGAGAGAAA---AACGCTTCAAATGGAGAA------------GAATAATTGTCATTC----------T-GGGGTGAATGAACTGGATTT
s cb4.chrX              9088559 225 + 21540570 ---AATGATTGAATGACACGCTCTCTCTTCTTCTGTCTCT--ATAATGCAGCTGTTTGATTG--TCACAGGAGCGGCGGTAGACGAAAATAAATGAGTTCgattgaaagagaaaaaga-------ggtcCCAACAC--CGACTATtcaaagaaagagagaaaattgtgaaaacgaGCGCTTCAAATGGAAAATAATGATTATTCTGGGGATTGTTATTC----------TAGGGATGCGAGgaccggaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   985601 183 -  4500979 CCGAATGATTGAATGACACG----------------CTCT--ATAGTGCAGCTGTTTGATTG--TCACAGAAGCGGCGGTAGACGAAAATAAATGAgttgaattgaaa-agagaaaga-------ggtcC-----C--CGACTTTTCAAAGAAAGAGAATAGA-----------GGCGcttcaaatggaaaa-----------atagTGATTGTTATTC----------T-GGGAGAAATGgattggattc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5975578 187 + 20921866 CAGAATGATTGAATGACATGCT--------------CTCT--ATAGTGCAGCTGTTTGATTG--TCACAGAAGCGGCGGTAGACGAAAATAAATGAgttgaattgaa--agagaaaaa-------ggtcC-----T--CGgcaattcaaagaaaatggaaaat-----------agcGCTTCAAATGGGAAA------------GAGTGATTGTTATTCCATACGATTTT-GGGATTTTGGTACT------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2275863 177 +  4147112 caaaatgattgaatgaCACGCT--------------TTCTTCATAGTGCAGCTGTTTGATTG--TCACAGAAGCGGCGGTAGACGAAAATAAATGAGTTGAATTGAA--AGGGAAAAG-------GGTCC-----CCGCgacaattcaaagaaaatggaaaat-----------aacgcttcaaatggaaaa------------taatGATTGTCATTC----------T-GAGA----GGGACA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  171293 179 -   343467 CGAAATGATTGAATGACGCGCTCG------------CTCC--ATACTGCAGCTGTTTGACTTCCTCACAAAAGTGGCGGTCGACGAAAATAAATAAGTTGAATTGGA--ATAGGAATAGCAAGTGGGTCC-GGTGC--TTGC-ATCCATAAAAGGC------------------AACGCTTCAAA---GAAG------------GGCTGATTGTTATTC----------A---------TGGACTAGATTT
i caeJap4.Scaffold18142 I 542 C 0

a score=-1876.000000
s ce10.chrX             3959584  7 + 17718866 CGGAATA-------
s cb4.chrX              9088784 10 + 21540570 ----tttcgaaaaa
i cb4.chrX              C 0 I 57
s caeRem4.Crem_Contig0   985784 13 -  4500979 tgaatttcataCG-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2276040  0 +  4147112 C
e caeJap4.Scaffold18142  171472  0 -   343467 C
e caeSp111.Scaffold630  5975765  0 + 20921866 C

a score=2096.000000
s ce10.chrX             3959591 10 + 17718866 GAATACCAAT
s caeRem4.Crem_Contig0   985797 10 -  4500979 GAATTTCAAT
i caeRem4.Crem_Contig0  C 0 I 96
s caeSp111.Scaffold630  5975765 10 + 20921866 GAATTCCAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2276040  8 +  4147112 TAATT--AAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  171472  0 -   343467 C
e cb4.chrX              9088794 57 + 21540570 I

a score=-176.000000
s ce10.chrX             3959601 4 + 17718866 TTTG
s caeSp111.Scaffold630  5975775 4 + 20921866 TTCG
i caeSp111.Scaffold630  C 0 I 33
s caePb3.Scfld02_0      2276048 3 +  4147112 TTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  171472 0 -   343467 C
e cb4.chrX              9088794 57 + 21540570 I
e caeRem4.Crem_Contig0   985807 96 -  4500979 I

a score=0.000000
s ce10.chrX             3959605 20 + 17718866 GGTATAAATTTAAGCATTTT
e caePb3.Scfld02_0      2276051  0 +  4147112 C
e caeJap4.Scaffold18142  171472  0 -   343467 C
e cb4.chrX              9088794 57 + 21540570 I
e caeSp111.Scaffold630  5975779 33 + 20921866 I
e caeRem4.Crem_Contig0   985807 96 -  4500979 I

a score=-31208.000000
s ce10.chrX             3959625 425 + 17718866  
s cb4.chrX              9088851 508 + 21540570  
i cb4.chrX              I 57 C 0
s caePb3.Scfld02_0      2276051 150 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  171472   0 -   343467 C
e caeSp111.Scaffold630  5975779  33 + 20921866 I
e caeRem4.Crem_Contig0   985807  96 -  4500979 I

a score=-8887.000000
s ce10.chrX             3960050 55 + 17718866 CAAATAAAGGTAAATACAATTTTTATTAGCAATTATATCACCCTTTGGAATTATC
s cb4.chrX              9089359 36 + 21540570 C---Taagg--------aattttgaaca--aatcgaattttc------aattgtc
i cb4.chrX              C 0 I 10
s caePb3.Scfld02_0      2276201 24 +  4147112 -----------------GATTTTAACC--------CATTATT------TATATTC
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18142  171472 28 -   343467 Taaatgaaaggaaaaaaaaagaaaaacg---------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5975779 33 + 20921866 I
e caeRem4.Crem_Contig0   985807 96 -  4500979 I

a score=-2070.000000
s ce10.chrX             3960105 19 + 17718866 AAATTCCAAATTCTTATAT
s cb4.chrX              9089405 10 + 21540570 atattt---------ctca
i cb4.chrX              I 10 I 7
s caeSp111.Scaffold630  5975812 19 + 20921866 aaattcaaaatgattatGA
i caeSp111.Scaffold630  I 33 I 1
s caePb3.Scfld02_0      2276230 10 +  4147112 gaattc---------tcga
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold18142  171500  6 -   343467 aaattc-------------
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   985807 96 -  4500979 I

a score=239971.000000
s ce10.chrX             3960124 292 + 17718866 TTCCAGGAGGCTACGAGGGTCATGAAGTCGACGACACTGACTCAATAGACAAGGCATTTTTTGTTATCATTTGCATTGCTGCGGCATTCCTACTTATTGTGGCAGCAACGTTGATCTGTTATTTCAAGCGCTCTAAAAAAGAAGACATGATTCCGACTCGACTTCCGTAGGGTTTA-TTTTCAACTCTGCC--CATTGTCATCCCC----------TTCCTTTCAGAACGTCTTTTCGGAATTCTTTGAAATCTACAAAAAGCGCGCAGCCTTTTCTTCTGAGCACACCGCGAGA----TGGTAATCCA
s cb4.chrX              9089422 301 + 21540570 -TCTAGGTGGATACGAAGGAACCGAAATTGATGATCATGACTCTATTGACAAGGCATTTTTTGTCATCATCTGTATTGCCGCCGCCTTCCTGCTCATTGTTGCAGCTACCCTCATCTGCTATTTCaagagatcaaaaaaagaagacatgaTTCAAACTCGACTTCCGTTAGTTTCA-TTTTCCCGCTTTAG--AATTGCCTTTTTCAACAGTTAATCTTTGTTCAGGACATCTTTCCGAAACTCGCTGAAATCCACAAAAAGCGCGCAACCATTTCTTCTGAGCACTCCGAGAGA----TGGTAATCCG
i cb4.chrX              I 7 I 28
s caeRem4.Crem_Contig0   985903 299 -  4500979 ttACAGGAGGCTACGAAGGAGCTGAAATCGATGATCATGAATCTATCGACAAggcattttttgttatcatctGCATTGCTGCTGCCTTCTTGCTCATTGTTGCAGCTACCCTGATCTGTTATTTCAAGCgatccaaaaaagaagatatgaTTCAGTCTCGTCTTCCGTTAGTTTCA-TTTTCTCGTATTCA--CAGAACC---CACAAAAAATGATCTTTGTTCAGAACATCTTTCCGGAACTCGTTGAAATCCACAAAAAGCGCGCAACCATTCCTTTTGAGCACTCCGAGAGA----TGGTAATCCG
i caeRem4.Crem_Contig0  I 96 I 18
s caeSp111.Scaffold630  5975832 291 + 20921866 TTGCAGGTGGCTATGAAGGAACTGAAATCGATGACCATGACTCTATCGACAAAGcattttttgtcatcatCTGTATAGCTGCTGCTTTTCTGCTCATTGTTGCAGCTACATTGATCtgttatttcaaaagatcaaaGAAGGAGGACATGATCCAAACTCGACTTCCgttagtttcatttttctccttttga-----------TCTCAAA---TGATCTTTGTTCAGAACTTCTTTCCGAAACTCGttgaaatcaacaaaaagcGCGCAGCCATTCCTTTTGAGCACTCCGAGAGA----TGGTAATCCG
i caeSp111.Scaffold630  I 1 I 9
s caePb3.Scfld02_0      2276241 303 +  4147112 tttcaggTGGTTATGAAGGAACAGAAATTGACGATCACGACTCAATCGATAAAGCGTTCTTTGTTATTATCTGCATTGCTGCTGCTTTTCTGTTAATTGTCGCTGCAACTTTGATCTGCTATTTCAAAagatcgaaaaaagaagacatgaTCCAAACTCGACTTCCgttagtttcaattttctctttttca--aaagtttcttttcaaaaattgatctttGTTCAGAACTTCATTCCGGAACTCGTTGAAATCCACAAAAAGCGCGCAGCCATTCCTTTTGAGCACTCCTCGAGA----TGGTAATCCG
i caePb3.Scfld02_0      I 1 I 9
s caeJap4.Scaffold18142  171506 294 -   343467 ----AGGAGGCCACGATGGAAATGAACTGGATGGCAATGATTCAATCGATAAAGCGTTTTTTGTGATCATTTGCATCGCTGCTTCCTTTTTGCTCATTGTGATGGCCACTCTAGTTTGTTACTTCAAAAGATCAAAGAAAGAAGACATGATTCAAACTCGTCTTCCGTAAGTTTCA-CAGTTCAATGTTCAAGAACTATTCctttc------tattatttttttagcaCATCGTTTCGAAACTCACTAAAGTCTACCAAAAGCGCTCAACCATTTCTTCTAAGCACTCCTAGAGAAGGTTGGAAA----
i caeJap4.Scaffold18142 C 0 C 0

a score=-5118.000000
s ce10.chrX             3960416 22 + 17718866 TCTTGAGATGTTATCATAAATT-----------
s caeRem4.Crem_Contig0   986220 16 -  4500979 -tc-----ttctttttcaaaga-----------
i caeRem4.Crem_Contig0  I 18 I 3
s caeSp111.Scaffold630  5976132 19 + 20921866 TTCCG---TTTCCTCTCAAaga-----------
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0      2276553 22 +  4147112 TTCcgttattttcttcaaaaga-----------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18142  171800 22 -   343467 -----------TAATCAAAATTGattgcaattt
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9089723 28 + 21540570 I

a score=209095.000000
s ce10.chrX             3960438 252 + 17718866 ACAT-------CTCT-----TTTGTAGGACCTCCGACTCTTTCCGCTATTTCAAGCGCTCCTTGTTCTTCGTCGTCTGCGTCGGGAAATTCGATAATCCCGAGCAAGCCAAGAAACGTGAG-TTTTTGTGAAAAGTGACAAGAATATCTTGTCAAGAATGACGCAGGTTTTGAGTTGATTGCAGATTGACGTGAGACGTGCATTGTTACAACTCTATCAAGATCGAGATGCTTTTCAATCTCTACC---TCTAGATATGGAGGGTAAT
s cb4.chrX              9089751 242 + 21540570 AGAT-------CTTT-----TTTGCAGGACCTCAAACACTTTCGGCAGTTTCGAGCGCTCCTTGTTCTTCCTCA---ACGTCGGGGAATTCGATAATCCCGGACAGGCCGCGAAACGTGAGTTTTTTATGAAAAGTGACAAGAGAGCCC------AACTGACGTAG-----GAATGATTTTTAGATTGACGTGCGACGTGCATTGTTACAACTATATCAAGATCGAGAAGCATTCCAACCTCTACCCTATGTAGATATGGAAGGTTAG
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   986239 237 -  4500979 TGAT-------CTTT-----TTTGCAGGACCTCAAACGCTTTCTGCGGTTTCAAGCGCTCCTTGTTCTTCCTCA---ACATCGGGGAATTCAATAATCCCGGACAAGCCACGAAACgtgag-tttttgtgaaaagtgaCAAG---------------CTGACGTAGGTTTTGAGTTGATTGCAGATTGACGTGAGACGTGCATTGTTACAACTATACCAAGACCGAGAAGCATTCCAACCTTTACCCTATGTAGATATGGAAGGTAGG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  5976151 241 + 20921866 ---tccttttttctt-----cttgcaGGCCCACAAACCCTTTCTGCGGTTTCAAGCGCTCCTTGTTCATCTTCA---ACGTCGGGAAATTCAATAATCCCGGACAAGCCgagaaatgtgag-tttttgtgaaatgtGACAGG---------------CTGACGTAGGTTTTGAGTTGATTGCAGATTGACGTGCGACGTGCATTGTTACAACTATACCAGGATCGTGATGCATTCCAACCTTTACCCTATGTAGATATGGAGGGTAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2276575 233 +  4147112 -----------tcTT-----TTTGCAGGACCACAGACTCTTTCTGCGGTTTCAAGCGCTCCTTGTTCATCTTCA---ACGTCGGGAAATTCAATAATCCCGGACAAGCCAAGAAACgtgag-tttttgtgaaaagtgaCAGG---------------CTGACGTAGGTTTTGAGTTGATTGCAGATTGATGTGAGACGTGCTTTGTTACAACTATACCAAGATCGTGATGCATTCCAACCACTTCCCTATGTAGACATGGAGGGtatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  171822 239 -   343467 ------ttcaactCTAAATCCTTGCAGGAGCCCAAACACTTTCTGCGGTGTCAAGTGCGCCTTGCTCCTCT------GCCTCGGGAAATTCAATAATCCCGGACAAACCGAGAAATGTAGG-AATTTG-AAACAGAGACAAG---------------CTGTCATATATTTTGAGTTGATTGCAGATTGACGTCAGAAGAGCATTGTTACAACTTTACCAAGACCGCGAAGCTTTTCAACCACTTCCCTATGTTGATATGGAgggtaag
i caeJap4.Scaffold18142 C 0 I 114

a score=601327.000000
s ce10.chrX             3960690 742 + 17718866  
s cb4.chrX              9089993 762 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   986476 747 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5976392 733 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2276808 740 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  172175 826 -   343467  
i caeJap4.Scaffold18142 I 114 I 172

a score=110552.000000
s ce10.chrX             3961432 182 + 17718866 AT-------------------TTC---------------CAAGTTTAACACTAT----TAAA--ATT-----------TTTCAGTGGTCACTGGGAGTTCTACTGTGGGAGCTCATGTCGCTAGGAGGATCTCCACACGCTGAAATAGACCCTGAGGAAGTGTACACAATGATTCTCAAAGGAAAGCGTCTGCAACAGCCGAACAATTGTCCGGATCAATTGTTAGTTCATAA
s cb4.chrX              9090755 218 + 21540570 ATAGTTCTG---CCAATTCTGTCaccaaaaatcaaacattAACTTTAAGAAAATACACAGAAA-TGT-----------TTACAGTGGTCCCTAGGAGTGCTCATGTGGGAACTGATGTCGCTCGGTGGCTCACCATATGCCGAAATCGATCCTGAAGATGTGTATACAATGATTCTCAAAGGAGCGCGTCTCCATCAGCCAAACAATTGCCCAGATCAATTGTAAGATATCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   987223 188 -  4500979 GT-------------------TTACGAAA----------CGAGGTTgatcaaat----aaaat-tgt-----------ttacaGTGGTCCCTTGGAGTACTCACGTGGGAACTTATGTCGCTCGGAGGCTCACCATATGCAGAAGTTGATCCAGAAGATGTTTATACAATGATTCTCAAAGGAGCCCGTTTACATCAACCAAACAACTGTCCAGACCAATTGTATGAAGATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5977125 185 + 20921866 ---------------------TTACTAA-----------TTAAATTGAGCTGAA----AATCT-GAT-----------TTACAGTGGTCACTGGGTGTTTTGATGTGGGAACTCATGTCTCTAGGAGGTTCACCGTTCGCTGAAGTTGATCCTGAAGATGTATACACAATGATTCTCAAAGGAGCACGACTTCATCAACCAAATAACTGCCCAGATCaattgtgagaaaaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2277548 188 +  4147112 AC-------------------TTCCCTG-----------TTAacttattccaat----tttctcaaa-----------tttcagtgGTCACTCGGAGTCCTCATGTGGGAACTGATGTCTCTTGGAGGTTCACCATACGCTGAAGTGGATCCTGAGGACGTCTACACAATGATTCTGAAAGGAGCGCGTCTTCATCAGCCAAACAATTGTCCAGATCAATTGTAAGTTTATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  173173 215 -   343467 --ATTCCCACGCCTGGtttttttACTAT-----------TAAGAATCTCATCAA----TAATT-TATATCCAACTTCCTTTCAGTGGTCGCTCGGAGTGCTCATGTGGGAGCTGATGTCGTTGGGAGGGTCTccatattctgaagttgatCCTGAAGACGTATACAAAGTGATTTTGAAAGGCGCACGACTTCATCAGCCAAACAATTGCCCTGATCAACTGTGGGTTTTtga
i caeJap4.Scaffold18142 I 172 I 46

a score=-12824.000000
s ce10.chrX             3961614 31 + 17718866 TAAAGTACA---CGTTTC--ATTTTTA------ATTATAATT
s cb4.chrX              9090973 36 + 21540570 TATAAGCAAATTGAattt--gattctgaatttcatttc----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   987411 31 -  4500979 AACAGACAA---GAGTTG--AAATACAAAG---ATTTCG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5977310 26 + 20921866 aacaaatgc---caataa--aatt-----g---atttca---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2277736 34 +  4147112 CTTGATGGT---CAATACCTAGTTCTG--t---attttaatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  173388 46 -   343467 I

a score=261659.000000
s ce10.chrX             3961645 476 + 17718866  
s cb4.chrX              9091009 513 + 21540570  
i cb4.chrX              C 0 I 196
s caeRem4.Crem_Contig0   987442 468 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5977336 447 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2277770 455 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  173434 457 -   343467  
i caeJap4.Scaffold18142 I 46 C 0

a score=205842.000000
s ce10.chrX             3962121 451 + 17718866  
s cb4.chrX              9091718 557 + 21540570  
i cb4.chrX              I 196 C 0
s caeRem4.Crem_Contig0   987912 427 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5977783 436 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2278225 434 +  4147112  
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18142  173891 465 -   343467  
i caeJap4.Scaffold18142 C 0 C 0

a score=-40.000000
s ce10.chrX             3962572 26 + 17718866 TTCGTGGTTGACCAAGGGTCTGAAAC
s caeJap4.Scaffold18142  174356 17 -   343467 T------TTGATTCAGGGCCTGA---
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2278659 20 +  4147112 I
e cb4.chrX              9092275  0 + 21540570 C
e caeSp111.Scaffold630  5978219  0 + 20921866 C
e caeRem4.Crem_Contig0   988339  0 -  4500979 C

a score=-16611.000000
s ce10.chrX             3962598  80 + 17718866 AATCTTAGATTT----------GTATTTTATG------TAGAGAAAAAATTAAATTAGGAACTTTAAA--------GTTTTTC-------AAAATG--------TAACGAATGTTTAAT
s cb4.chrX              9092275   5 + 21540570 -----------------------------------------------------------------------------------------------------------------tttag-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   988339   5 -  4500979 ---------------------------------------------------------------------------------------------------------------TGTTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  174373 119 -   343467 AATTTCACATTTAAACAAATAGGTACTGCACGGCGTGTTAAACGGagcgttggaaaataaagtttaaactgcgcgggttttttttccgaaaaaatattCTGGCctaatgtgttttcaat
i caeJap4.Scaffold18142 C 0 I 118
e caePb3.Scfld02_0      2278659  20 +  4147112 I
e caeSp111.Scaffold630  5978219   0 + 20921866 C

a score=-3414.000000
s ce10.chrX             3962678 69 + 17718866 TTTCCGGAGCCAAATGGCAGATTTCAACTAGTCCAAACCCCTACTGCACAAGCTTTCTAATAAAGGCGG
s cb4.chrX              9092280 16 + 21540570 -----------------------------aattcaaatctggaat------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   988344 13 -  4500979 -------------------------------TCCAAATCCTAAA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2278659 20 +  4147112 I
e caeJap4.Scaffold18142  174492 118 -   343467 I
e caeSp111.Scaffold630  5978219  0 + 20921866 C

a score=0.000000
s ce10.chrX             3962747 5 + 17718866 TTTGT
e caePb3.Scfld02_0      2278659 20 +  4147112 I
e caeJap4.Scaffold18142  174492 118 -   343467 I
e cb4.chrX              9092296 0 + 21540570 C
e caeSp111.Scaffold630  5978219 0 + 20921866 C
e caeRem4.Crem_Contig0   988357 0 -  4500979 C

a score=-10427.000000
s ce10.chrX             3962752 40 + 17718866 GCAAGCTCATTCGAAA----------GTTGTTACATTCCTAGACAAATCT-----
s cb4.chrX              9092296 23 + 21540570 --------attttcta----------attattgattttttt--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   988357 23 -  4500979 --------ATTATAAA----------CTTGTGAGATTACTC--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5978219 13 + 20921866 ----------------------------tttgagccagCTC--------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  174610 46 -   343467 gcaagtcgattgaaaacaaaataagcgtggtcgcatttttc---------tacaa
i caeJap4.Scaffold18142 I 118 C 0
e caePb3.Scfld02_0      2278659 20 +  4147112 I

a score=-5791.000000
s ce10.chrX             3962792 61 + 17718866 ACCTGATCCGCATTGATCGGTACTTT---TTACCGGGGCTAAACGGGT-----------------------CGGATAATTTTTTTTT
s caeSp111.Scaffold630  5978232 11 + 20921866 --CTGA------------------------------------------------------------------GTATAAC--------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  174656 84 -   343467 ---ttGGTTGCATTTATCTGCACAGCCAAttatctgcgttaaactgatacgaaaagaagacgcagagtgcgagaATACTGTTCTTTT
i caeJap4.Scaffold18142 C 0 I 120
e caePb3.Scfld02_0      2278659 20 +  4147112 I
e cb4.chrX              9092319  0 + 21540570 C
e caeRem4.Crem_Contig0   988380  0 -  4500979 C

a score=-17610.000000
s ce10.chrX             3962853 84 + 17718866 AGTAAAGTTTTAAGCTTCGCACACATTTTTTTCGATCAAGATCGTCAAACAATTTTGCAATTTCCGAAAAATAATATAACATTT
s cb4.chrX              9092319  9 + 21540570 -----------------------tgttgatt---------------------c-------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   988380 17 -  4500979 -----------------------CATTGATT-------------TTAAATGAC-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5978243 37 + 20921866 ----ACGTCTTAG-------TCACAGAGTTTTGaat-------gttaaaaaaatt-----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2278679 32 +  4147112 ------GCCTTA--------TCTCATTATTCAGCAT-------GTCAAATAAA-------------------------------
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold18142  174740 120 -   343467 I

a score=215422.000000
s ce10.chrX             3962937 475 + 17718866  
s cb4.chrX              9092328 485 + 21540570  
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   988397 459 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold630  5978280 462 + 20921866  
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0      2278711 487 +  4147112  
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18142  174860 461 -   343467  
i caeJap4.Scaffold18142 I 120 C 0

a score=0.000000
s ce10.chrX             3963412 18 + 17718866 TTGATTTTTTATAGCTTG
e caePb3.Scfld02_0      2279198 16 +  4147112 I
e caeJap4.Scaffold18142  175321  0 -   343467 C
e cb4.chrX              9092813 18 + 21540570 I
e caeSp111.Scaffold630  5978742 11 + 20921866 I
e caeRem4.Crem_Contig0   988856 24 -  4500979 I

a score=125119.000000
s ce10.chrX             3963430 278 + 17718866 ATACCATCTCCAGGTGAATCTTTTTTATATGCGATTGAGACGACGCAGGGTATTCCATTTCCAGAGCTTCTTCTTTCACT-------CCAAGAAAATTCGGTTTCCTAAA---A----AA--AAAATCCTGATTGATT----ATTCCAAGAA--------------TAATGCAGTGAACCTCTCTTTCATATACTCCAACTTGTGATCATTTTCAATTTTTC---------GTGG---------------AGTGAGGGAAGGAGAAGATGTTGTTTCAATAATGAAAAAATGATCAATAGTCAGTGGAG------------GCGCCGTAGGAACTTCTGAAAATAAAA
s cb4.chrX              9092831 290 + 21540570 GTACCATCTCCAGATGAATTTTCTTGATGTGAGACAGTGATGGCACAGGATACTCTAGTTCCTGCACTTCTTCTTTAACT-------CCAAGAAAGTttggttttct------g----ga--aaaatttttatag--c----gTTTTGATAAATAGTTTGCTGAATAGCCTCAAATCACCTCTCCTTCATATATTCCATTTTATGATCATTCTCTATTCTTCTAGTAGTTGTAGG---------------TTGCggagat------actgtagtttcaatCATGAAAAACTGGTCGACAGTGAGCGGTG------------GTGTTTGAGGCATAGCTaaaaacacta
i cb4.chrX              I 18 I 4
s caeRem4.Crem_Contig0   988880 290 -  4500979 TTACCATTTCTAAATGTATCTTTTTGATATGAGATTGTGACGACACGGGGTACTCCAATTCTTGTACTTCCTCCTTCACC-------CccagaaaatttggttttctaaaGACA----GG--GAACTTAATACAGATT----GTTTTAATGA--------------TATCTTGAATTACCTCTCTTTCATATACTCCATTTTGTGATCATCCTCAATTTTTCTCGGTGTAGGTGG---------------TATTGGAGATGGGGACACGGTGGTTTCAATAATGAAAAACTGGTCTACTGTAAGTGGTG------------GAGCGGTGGGaacagctgaaaatagaa
i caeRem4.Crem_Contig0  I 24 I 30
s caeSp111.Scaffold630  5978753 281 + 20921866 ATGCCATTTCTAAATGAATCTTTTTGATGTGTGATTGAGACGACACAGGATATTCCAATTcttgaacttcttctttgacA-------CCCAAGAAGtttggttttct------g----aa--aacatctACATTC--CTTatgttctttgaa--------------aatgct---gAACCTTTCTTTCATATACTCCATTTTGTGATCGTCCTCAATTTTTCTGGGTGGTGGTGG---------------AATTGGAGAGGGAGAAACTGTTGTTTCTATGATGAAGAATTGGTCAACAGACAATGGGG------------GTGCTGGCGGCAttactgaaa--gaaa
i caeSp111.Scaffold630  I 11 I 3
s caePb3.Scfld02_0      2279214 283 +  4147112 ATACCATTTCTAGATGAATTTTCTTAATGTGTGACTGTGAAGAAACTGGGTACTCCATCTCTTGTACTTCTTCCTTGACC-------CCAAGAAAATTgggttttct------gaataaa--aacattGGAATCT--C----GGTAAATGAA--------------AGTATT---TTACCGTTCTTTCATATATTCCATTTTGTGAtcgtcttcaatttttctgggaGTCGGTGG---------------TATTGGAGATGGTGAGACTGTTGTTTCGATTATAAAGAATTGATCGACTGTTAAAGGTG------------GTGCCGGCGGCataactgaaactgaaa
i caePb3.Scfld02_0      I 16 I 9
s caeJap4.Scaffold18142  175321 291 -   343467 ----CATTTTCaagtgtatttttttaatatga-------------------aTCTCCTCTGGTAAATTTCTCATGTCACCACGAAAATCAAAAGTGCTTGGTTTTCT------G----GAACACAATTTTTAAGA-------AGCCAAAGAT--------------CATAATTTGTTACCTCTCTTTCATATACTCCATCTTATGAtcattcacaatttttttgggatttggAGGAGAGGAAATTATAATAATTGGAGGTGGA---ACTGTCGTCtcaatcatgaaaaattgattgATGGTAAGTGGAGGAACATCTAAAAGTGCAGAATGCGCGgaggacaaaaaaa
i caeJap4.Scaffold18142 C 0 C 0

a score=-3804.000000
s ce10.chrX             3963708 25 + 17718866 TTGGAAAAACAATC-CGTTAATAGAA
s cb4.chrX              9093125 18 + 21540570 -tggaaaaaacaa-------ataaaa
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold630  5979037 19 + 20921866 ctGGAATGAATAT-------AGAGGA
i caeSp111.Scaffold630  I 3 I 1
s caePb3.Scfld02_0      2279506 13 +  4147112 ttgaaatttttgt-------------
i caePb3.Scfld02_0      I 9 I 1
s caeJap4.Scaffold18142  175612 25 -   343467 -tggacaaaaaaaCATACGACTAGAA
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   989170 30 -  4500979 I

a score=49036.000000
s ce10.chrX             3963733 289 + 17718866 GAAATAACCTCTTGTTGTCTTGTAAAATTGTGTAGT---TGGTGTTGTTGCTGTAGTGGTTGGCGGAAACCAATCATATTTTTTGACTTTGGCGGTAGTCCGTTGTAATTGTTTTGCAAAATCTTCTGATACAAATCTAGCCATTCCCCTGAAAATGGAGATTTTTTTTTCGTATGATG-------------------------------------------------------GATTTGTGAAAAAATGAAAAAATAAACGTGTTTTTTGGCTCAGATATTGGAAATTG-AGCAGTAGATAAGGAAGTGCCCCTAAAACCCA--------AACCGTGTATCATCACTAATTTTTA
s cb4.chrX              9093143 334 + 21540570 cgGGTTACTTTTGATGGTCATTGAAAATTGAGTAGTGGGTAGTGCTGTTGAAGTAGTCGTCGGTGGAAACCAATCATGCTTTTTGACCTTCGCCGTGGTTCGTTGAAGTTGTTTGGCAAAATCTTCAGAGACAAAGCGGGCCATGCCTCTGGAATAAG-GACTGCAATTTTTTATGTTGATTGGTAAATCCTATTTCGGTAATACAGTGTTTCCACATTTCCCAATCCATCAacattatctcgattccggtaaaaaaata------------tcgaacctttgtcaactgatgaattatttatcatagtattaccaatattta--------atcagt-tgacataatTCGATATCA
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   989200 187 -  4500979 GTATTTACGTCTGGTGGTCATCGAAAACTGAGTGGT---TGGTGCCGTTGAAGTAGTTGTCGGAGGAAACCAATCATACTTTTTGACCTTGGCAGTCGTTCTTTGAAGCTGTTTGGCAAAATCTTCAGACACAAACCTTGCCATTCCTCTGAA------------------------------------------------------------------------------AACATTCTGT--------------------------------------------GACTG-------------------------AATACTTG--------ATCA---------AATATGTTAT--
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  5979057 184 + 20921866 CAGTTTACCTTTTGTTGTCATCGTGAACTGAGTAGT---AGGTGTTGTTGAAGTGGTCGTTGGTGGAAACCAATcgtattttttcactttcgcTGTTGTCCTTTGAAGTTGTTTGGCAAAGTCCTCCGAAACAAAACGGGCCATACCTCTGAAAT-----------------------------------------------------------------------------ATGTTATGTTTCTGAA---------------------------------CATGAGCTG--------------------------ATATTCA---------------------------------
i caeSp111.Scaffold630  I 1 I 4
s caePb3.Scfld02_0      2279520 213 +  4147112 ttttctacttcTGGTGGTCATCGAAAACTGTGTTGT---TGGAGTGGTAGAAGTTGTTGTTGGAGGGAaccaatcatattttttcactttcgcCGTTGTTCTTTGAAGTTGTTTGGCGAAATCTTCAGATACAAATCTTGCCattcctctgaaa--------------------------------------------------------------------------------attattttaaagaatgtaaaaa------------------------ttatgaactg--------------------------aaaattatgtCTTAGAACGTT-TTTCATAAT---------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  175637 155 -   343467 -----------------TCA--GTAAACTCTGTCAT---CGGAGTAGAAACTGTAGTTGTCGGTGGAAACCAATCGTACTTTTTGACTTTTGCAGTTGTCCGTTGAAATCGTTTGGCAAAATCCTCAGAAACAAACCTTGACAGTCCCCtagcaaaaaaga----------------------------------------------------------------------------------------------------------------------------aattg--------------------------aaattta--------agaa---------------------
i caeJap4.Scaffold18142 C 0 C 0

a score=-46349.000000
s ce10.chrX             3964022 145 + 17718866 CAAAAATTGAGTGGCTGTAAAAAACCATTTCACAGTTAGAAAAAAATACGGACCAAATTTG----------------------------------------------------------------------------------------------------------------------------------------------------AATGATCGTGTAAACGACGTATTACACCTGAAAAAATTTGGTACATCGCGCGGTAGATCAATTTTTAAATTTTCTCTAGCTCAT
s cb4.chrX              9093493 271 + 21540570 TTAAAGCTGACGGTTTGGATAGAATTCTATCA-------GAGGACAAATTG---TAACTTGTGGAGTTTTTAAAATAAGCTTTCTAATTTCTCGAAAGTCCTCTAATTCCTTTGATTTGCTCTGGCCTTGCGTTTTATTTCCTTTCTCATTGGAAGGACCTTTTGATAGAAGAGCCATGAATTTGAAACCAGAATTCACCAAATTtgttaatga----------aaaaaaaggttcccGAAAACTGTCCGC-TATCATATGGCAAGT-AATCTGTCtattgactttttttgat
i cb4.chrX              I 16 I 55
s caeRem4.Crem_Contig0   989387  34 -  4500979 -----------------------------------------GGACATATGG---GAACCTG----------------------------------------------------------------------------------------------------------------------------------------------------AATGA----------GA--------TTCTGAGA-------------------------------------------------AT
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      2279733  47 +  4147112 ----------------------------------------AGGAAATACTG---AAACTTA----------------------------------------------------------------------------------------------------------------------------AAAC--------------------AGTTA----------TACGAAATCGTCACTAGA-------------------------------------------------AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  175792  50 -   343467 --------------------------------------caaaaataaaata---aaaagta----------------------------------------------------------------------------------------------------------------------------------------------------atTGA----------ACC-------TCTTCGGA----------CGTTCTGTTGTAAG---------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5979241   4 + 20921866 I

a score=0.000000
s ce10.chrX             3964167 4 + 17718866 TTTT
e caePb3.Scfld02_0      2279780 0 +  4147112 C
e caeJap4.Scaffold18142  175842 0 -   343467 C
e cb4.chrX              9093764 55 + 21540570 I
e caeSp111.Scaffold630  5979241 4 + 20921866 I
e caeRem4.Crem_Contig0   989421 6 -  4500979 I

a score=-5480.000000
s ce10.chrX             3964171 42 + 17718866 CACACATTTAACAGGACTTTCCATGTAAACCAAAAATTTAAA
s caeSp111.Scaffold630  5979245 24 + 20921866 AACATCCTTATCTAGACTGTTTGT------------------
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2279780 12 +  4147112 -------TTTGCAAGAAGG-----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  175842 26 -   343467 ---------AATGGGCATTTCTGTGATGATCGGAA-------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9093764 55 + 21540570 I
e caeRem4.Crem_Contig0   989421  6 -  4500979 I

a score=162017.000000
s ce10.chrX             3964213 751 + 17718866  
s cb4.chrX              9093819 701 + 21540570  
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   989427 681 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  5979269 660 + 20921866  
i caeSp111.Scaffold630  C 0 I 123
s caePb3.Scfld02_0      2279792 687 +  4147112  
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18142  175868 633 -   343467  
i caeJap4.Scaffold18142 C 0 I 1

a score=-6357.000000
s ce10.chrX             3964964 61 + 17718866 ATAAAAAGGTTATGTTGGACA----TAATTCTGAAAGTTTTTACTT------------------TTTCCTTAG-------------------AATTTTTCGA
s cb4.chrX              9094520 61 + 21540570 --aaaatttgtttcctgagaacctgaaaatcagaaagagCTTACAT------------------TTTCTAT---------------------TACACTATCC
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig0   990108 58 -  4500979 --aaaaatagTTGGGCGTGTA-TTATGAAT--GCAACTACTcacat------------------tttcttc---------------------aacttcGCGA
i caeRem4.Crem_Contig0  C 0 I 61
s caePb3.Scfld02_0      2280490 51 +  4147112 ataaaa---------tgatAA-TTGTTATT--GTAAGTTAtcacat------------------tttcttc---------------------aatttcatga
i caePb3.Scfld02_0      I 11 I 44
s caeJap4.Scaffold18142  176502 99 -   343467 ATAGAAATGTGAGTGTGTAAA-TGGCCAAt--ttaaatacatacatttgtATCGAGCTCATCACTTTCTTCCGAATCCTGAAGCGGTCGTACAACTTTTTTA
i caeJap4.Scaffold18142 I 1 C 0
e caeSp111.Scaffold630  5979929 123 + 20921866 I

a score=56667.000000
s ce10.chrX             3965025 171 + 17718866 -----------------CTTGGTATCTTT------CGTTG-----AAA---------------------GTTCAATTTCACACACTCCAGATTTGCTCATATTCTGTTGATAACCATCTCGGCAATTGCACTTTCCCAAATCACAATACTGGTTACTCGCGGAACACTCCTCATCGTTCTCACAGTCT-GGGTTTATAGAT--------------------------TAATTTAAAA---ACTTTAATTA---------------------------
s cb4.chrX              9094644 186 + 21540570 -----------------ATGGACGATTTT------CATAG-----ATAAAAAAC---------AACCTGACTCAACTTCacaaattccagattttctcaTGTTTTGCTGATATCCGGGCTGGCAATTGCATTTTCCCAAATCacaatattgatttttttcagagcaatcTTGGTCAGTTTCGCAGTCTGTAAAATATATAC------------------------ATTAGTTTATTA---ATTTTAACTA---------------------------
i cb4.chrX              I 63 I 409
s caeRem4.Crem_Contig0   990227 173 -  4500979 -----------------TTATGTGAAAGC------CATAA-----AAGCTAAAC--------AAACCTGATTCCACTTCACAGACTCCAGATTTTCTCATATTCTGCTGGTACCCAGGTTGGCAATTGCATTTTCCCAGATCACAGTATTGATTCTTTTCGGTGCAATCTTTATCAATTTCACAGTCT-TAAAATAATGAC--------------------------TAG-TTATTG----------------------------------------
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold630  5980052 179 + 20921866 -----------------ACAAATGGTCAT----------------AAAACAAGT--------ATACCTTGCTCCACTTCACAAACACCAGATTGTCTCATATTCTGTTGATACCCTGGTTGACAGTTGCACTTCCCTAGATCACAATATTGGTTCTTCTGACTACAATCCTGATCACTTTCGCAATCT-GAATATACTCAT------------------------GATCTAATTTCA-----GTGAATTA---------------------------
i caeSp111.Scaffold630  I 123 I 4
s caePb3.Scfld02_0      2280585 188 +  4147112 -----------------ATACGTAATGATTTTCTCCagagatttcaagaaaagt--------gtACCTTGAGCTATTTCACAAATCCCAGATTGTCTCATATTTTGTTGATAACCAGGTTGGCAGTTGCATTTTCCTAGGTCACAGTACTGATTCTTCTCGCTGCAGTCTTTGTCAGTGTCGCAGTCT-AA----AATTAT------------------------GGTAAAATTTGA--------AGCCA---------------------------
i caePb3.Scfld02_0      I 44 I 6
s caeJap4.Scaffold18142  176601 266 -   343467 ATCATATCTGGGAAGAAATATATGtttga------aagag-----aaaaagagtcaAAGTGAATACCTTGTTCAAGTTTACAAACACCTGATTTTTCCATATCCTGCTGGTATCCTGGCTGACAATTACACTTTCCAAGATCACAAAACTGAAACTTTTGAATGCAATCTTGGTCGGAATCGCAGTCTGTAAAGAAAACACAGTTTGGAAATCAACTCAGAAAATGTCAGGATATTAGCCGCTTTAAATGGCTATTTTCTCGTCTCGTCTGCCCACA
i caeJap4.Scaffold18142 C 0 C 0

a score=119.000000
s ce10.chrX             3965196 3 + 17718866 AAA
s cb4.chrX              9095239 3 + 21540570 TAA
i cb4.chrX              I 409 C 0
s caeRem4.Crem_Contig0   990400 3 -  4500979 GTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  176867 3 -   343467 AAA
i caeJap4.Scaffold18142 C 0 I 151
e caePb3.Scfld02_0      2280773 6 +  4147112 I
e caeSp111.Scaffold630  5980231 4 + 20921866 I

a score=289470.000000
s ce10.chrX             3965199 716 + 17718866  
s cb4.chrX              9095242 750 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   990403 685 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5980235 666 + 20921866  
i caeSp111.Scaffold630  I 4 I 1
s caePb3.Scfld02_0      2280779 671 +  4147112  
i caePb3.Scfld02_0      I 6 I 1
s caeJap4.Scaffold18142  177021 780 -   343467  
i caeJap4.Scaffold18142 I 151 C 0

a score=-5736.000000
s ce10.chrX             3965915 33 + 17718866 ACTTATATGATGC--TAAAATTATCAAATATCATT
s caeSp111.Scaffold630  5980902  1 + 20921866 c----------------------------------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2281451 27 +  4147112 CAATATTGAGTGC--CAGAAATGTCAATT------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18142  177801 18 -   343467 ----------tgcTACAAAAATAACATT-------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9095992  0 + 21540570 C
e caeRem4.Crem_Contig0   991088  0 -  4500979 C

a score=-5223.000000
s ce10.chrX             3965948 46 + 17718866 ATAAAATTTTTTtaaaaattgttggaaagtttttttttattttca---a
s caeRem4.Crem_Contig0   991088 10 -  4500979 ----aattttttta-----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5980903 15 + 20921866 ----aacatttgtt--------------------------tttaa----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2281478 33 +  4147112 ----AACATTTGTTAAAAACGTGG-----------TCTAGTTTCATAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  177819  0 -   343467 C
e cb4.chrX              9095992  0 + 21540570 C

a score=-214.000000
s ce10.chrX             3965994 49 + 17718866 tcaaaaggcggtgaattaaattgccttttattggcattcaataaaaaat
s caePb3.Scfld02_0      2281511 35 +  4147112 GTTAAAGTCACTGTTTTAAAATAC--------------CAATGGAAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  177819  0 -   343467 C
e cb4.chrX              9095992  0 + 21540570 C
e caeSp111.Scaffold630  5980918  0 + 20921866 C
e caeRem4.Crem_Contig0   991098  0 -  4500979 C

a score=-783.000000
s ce10.chrX             3966043 4 + 17718866 tttc-
s cb4.chrX              9095992 4 + 21540570 tTTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991098 2 -  4500979 --tt-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2281546 4 +  4147112 -TTCC
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold18142  177819 0 -   343467 C
e caeSp111.Scaffold630  5980918 0 + 20921866 C

a score=-3181.000000
s ce10.chrX             3966047 58 + 17718866 aaaaacttttgaatagttttggataggataaaatgagatatttggtaattttggcccc
s cb4.chrX              9095996 13 + 21540570 ATGGAGTCTT---------------------------------------------CTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991100 10 -  4500979 aaaaaatatt------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2281550 56 +  4147112 I
e caeJap4.Scaffold18142  177819  0 -   343467 C
e caeSp111.Scaffold630  5980918  0 + 20921866 C

a score=-6535.000000
s ce10.chrX             3966105 45 + 17718866 aagtagtattaacaattttcccactggcgctaatccgcctttGCA
s cb4.chrX              9096009  8 + 21540570 ---AAGAAGTC----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991110  6 -  4500979 -----gaattc----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5980918 10 + 20921866 aagtaGAATT-----------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold18142  177819 10 -   343467 AAGTGTTACT-----------------------------------
i caeJap4.Scaffold18142 C 0 C 0
e caePb3.Scfld02_0      2281550 56 +  4147112 I

a score=51761.000000
s ce10.chrX             3966150 87 + 17718866 TAGCTTA-------AACTTACAACTTATTGCTAGTTCATCTTTTTCTTCACCTGAATTCGAATTGGACTCGTCGAGTAAAGTTGGAAAATTCTG
s cb4.chrX              9096017 81 + 21540570 ------A-------AGCTCACATTTAATCGCCAactcatctttttcttctcccgaACTTGAATTCGCTTCGTCCAGTAACGtaggaaaattctg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991116 82 -  4500979 -----aa-------aacttaCAACTTATGGCCaattcgtctttttcttctcccgaACTTGAATTTGCTTCATCCAGCAGTgttggaaaattctg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5980928 80 + 20921866 --------------GACTTACAACTCAGTGCTAGTTCGTCTTTCTCTTCTGCAGAACTTGCATTCGGTTCATCCGACAATGttggaaaattctg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2281606 87 +  4147112 -------TATCCTGTACTTACAGCTTAACGCCAgttcatctttctcttctccgGAACTCGAGTTTCCTTCATCAAGAAGAgttggaaaattctg
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold18142  177829 80 -   343467 --------------ATCTTACATCGGAGAGCAATTTCTTCTAATTCTTCCCCAGACATGGAATTGGTTTCGCCTAACATCGTAGGAAAGTTCTG
i caeJap4.Scaffold18142 C 0 I 37

a score=-11948.000000
s ce10.chrX             3966237 39 + 17718866 A--ACGAGCAGGAT--TGAAACATCTAGGATTAATTGATT-GTA
s cb4.chrX              9096098 37 + 21540570 g--aagtcc----TAGCATGCTCTACAGTTTACATCAAGC-AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991198 42 -  4500979 gaaaaatccaTT-TTGTTTATTCAAAGTAGTATAATTATT-GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5981008 37 + 20921866 a--atgttcatt-t--ttcagaaacaaaaatacaatAATT--GA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2281693 39 +  4147112 a--atgaacCAT-T--TTTGTTTAATACAATCCAATATGTCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  177909 37 -   343467 I

a score=238261.000000
s ce10.chrX             3966276 286 + 17718866 CTTACATCTGTCTTGAAAGGTAATTCATCGTCGTCTTCAAAACTGTGTTGAGCAGAATTAATAAATAGGAATGTAGAAAGTAGAATCAAAAATCGCAT-ATCTGAAAGTGAG-------TGTGAATGTGGCGAAGTGCGAAATGAAAATTGAAAAGAGACAC---TCGG-GGGCGGATG---GAATGAGAAGCTAGTTCTGAACTACTTGAGAGTTTTC--------TCTTTGAATGAC--ATATAAAAAAC-----CGATTTTGCT---AAGATCTCGTCCTTGCAATGTTACTTGAAGAG--------TTCATCAAGTAGGTGAC
s cb4.chrX              9096135 307 + 21540570 CTCACATCTGTGCTGAACGGTAAC---TCGTCCTCTTCTAAACTGTGTGGTGCTGATTTGGCTAATAGAAATGTagaaaacaaaatcaaaaatcgcaTAATCTGAAAGTGAGTGGAATGTGTGAATG-GAAGAAGtgcgaaatgaaaaatgaaaagagacaG---TCAGTGGGCGGATGGAAGA---AGAAGCTAGTTCTGAACTACTTgagagttttttcttcttctttttgaatgaC--ATAT-GAAAAC-----CGATTCTGCTAAAAAGATCTCGTCCTTCGAATGTTACTTGAAAAGAGAGGTTCATCATCAAGAAGATG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991240 279 -  4500979 CTCACATCTGTACTAAACGgtaac---tcttcttcttccagacTGTGTGGGGCAGATTTAACCAATAtaaatgtagaaaaaagaatcaaaaatcgcAT-GTCTGAAAGTGAG------ATGTGAAT--GAAGAAGTgcgaaataaaaattgaaaagagacaG---TCGG-GGGCGGATG---GA---AGAAGCTAGTTCTGAACTACTTGagagttttt--------cttttgaatgac--ATATAAAAAAC-----CGATTCTGCT---AAGATCTCGTCCTTGCAGTGTTACTTGAAGAG--------TTCATCAAGTAGATGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5981045 285 + 20921866 CTCACGTCTGTACTAAATGgtaat---tcttcttcttctaaactATGTGGGGCTGTATTAACCAAGAGAAATGTGGAAAAAAGGATCAAAAATCGCAT-GTCTGAAAGTGAG-------TGTGACTGTGAAGAAGTgcgaaatgaaaattgaaaagagacagTAGTCGG-GGGCGGATA---GA---AGAAGCTAGTTCTGAACTACTTgagagttttt--------cttttgaatggCTGACATAAAAAAC-----CGATTCTGCT---AAGATCTCGTCCTTGCAATGTTTCTTGAAGAG--------TTCATCAAGTAGATgac
i caeSp111.Scaffold630  C 0 I 46
s caePb3.Scfld02_0      2281732 282 +  4147112 CTTACATCTGTACTGAATGGtagc---tcttcttcttctaaactATGAGGTGCTGAATTTGCCaataagaaaatagaaaataggaTCAAAAATCGCAT-ATCTGAAAGTGAG-------TGTGAATGTGAAGAAGtgcgaaatgaaaattgaaaagagacaGTA-TCGG-GGGCGGATG---GA---AGAAGCTAGTTCTGAACTACTTgagagttttt--------cttttgaatgtc--ATATAAAAAAC-----CGATTCTGCT---AAGATCTCGTCCTTGCAATGTTACTTGAAGAG--------TTCATCAAGTAGATGac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  177946 274 -   343467 CTTACATCAATGTTAAATGGTAGT---TCTTCATCAGTTATTGGTTGCGGAGCAGAAGAAACAAGTGAAAATAGAGGGAAAAAGATCAGAAACCGCAT-GTCTGAAAGTGAG-------TGTG-----GAAGAAGTGCGAAAAGGAAACCAAAAGGAGGCAC---TTA--TGGCGGATG---GA---AGAAGCTAGTTCTAAACTACTTGAAAGTTTTT---------------GTCGCTTACATAAGAAACAACATTGATTCATCA---GAGATCTCGTCCTTGCAACGTCACCTGAAGAG--------TTTATCAAGTGGATGAC
i caeJap4.Scaffold18142 I 37 C 0

a score=-2264.000000
s ce10.chrX             3966562 12 + 17718866 -ACCGTCTCACGG
s caeRem4.Crem_Contig0   991519  5 -  4500979 --------GAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18142  178220 12 -   343467 TAttttttttAG-
i caeJap4.Scaffold18142 C 0 I 85
e caePb3.Scfld02_0      2282014  0 +  4147112 C
e cb4.chrX              9096442  0 + 21540570 C
e caeSp111.Scaffold630  5981330 46 + 20921866 I

a score=-6599.000000
s ce10.chrX             3966574 43 + 17718866 TTTGAGAT---TTTTTGAAAAAAAAAACGC----TATTTTTAGATTCTTG-----
s cb4.chrX              9096442 38 + 21540570 --AAATAT---TATTGAAAC-CGAAAATGA----AATATTATGAATC-------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991524 55 -  4500979 CAAAATGTTTATATTGAACTGTGAATatgagaataattttttcaccCTTCGTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2282014 37 +  4147112 ----acat---ttttcacttctcaaaa--a----tactttttcgtttttc-----
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18142  178232 85 -   343467 I
e caeSp111.Scaffold630  5981330 46 + 20921866 I

a score=-363.000000
s ce10.chrX             3966617 42 + 17718866 AACGTATTATAGA---------------TTCTTGAAATGAAA-----------------TTGAGTAGAAGTGA--A
s cb4.chrX              9096480 59 + 21540570 TAAACAGTTCAAA---------------GATGGAAAGTGAAATATGGAATCTTCTAtgaacaaaaaggaaaaa--a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991579 72 -  4500979 AAGATAATTCCAATTGGTAACTGAAAATAACGGGAACTGAAA----AGATCCTCCAtgtggaaataagaaaaatga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  5981376 41 + 20921866 -aatgaattctga---------------accttgagatgaaa-----------------ttgagaagaaagac--a
i caeSp111.Scaffold630  I 46 C 0
s caePb3.Scfld02_0      2282079 41 +  4147112 -actgaattctga---------------acttcgaaatgaaa-----------------tcgagaaggaagaa--a
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18142  178232 85 -   343467 I

a score=124710.000000
s ce10.chrX             3966659 350 + 17718866 TAGAATAAGCA------TTGAAACGAAAA-----GACAGGAAC--AA----GGTAGACTAACTCATTAGACGTCGACGGGTCAGTCAAGGC-GGGCCGGT-GAGTTTCTTC--ATTCAT-CCTAAGGTTCCGCACGCTCACTTTCACCTACAACTGGCCCGTTTCAAACAATTGAAA---CCGCGTAGTTCCCCGTCCGAACTGGAATA--AACTGCGCAATACTTATTGGCACG-------------GCTTTCCC--GAAA--------C-ACCGGTTAGATGCTT----TTTGACCGACCGAAAATTAAAGCGAACAGTGCTTTTGACGCTCTATTATA----TTCTTTGTTTTATTG--TTCGGC------------------------GAGTTAATGGGTTCCAGGGTTTCTTG---GATGGGTTCCAGTAAGA
s cb4.chrX              9096539 349 + 21540570 ggaaattgttG---AGGTAGTCGGGAAAACGGA-CAAGTGAGT--AG----GTTAGACTAGCTCATTAGACGTCGTCGGGTCACTCAAGAC--GGGCGGT-AGGT--------ATTCATACA--AGGTTCCGTGCGCCAACTTTCACCCGCATCTGGCCCGTTTCAAACAATTGAAA---CCGCA---------GGCCGAACTAG-ATA--AACTGCGCAATACTTATTGGCATATGTCGGTAGG---GCTTTTACCGCTCG--------CTACCGGTTAGATGCTT----TTTGACCGGCGAGAATTGGAAGCGAACAGTGCTTTTGGCgcttaatt----------tttgttttattggGATGTGT------------------------GAG--AATAGATTCCAGATATTTGAATGAAATTGGTTCCAGTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   991651 353 -  4500979 agaagctGACGGAAAAGAAGTAAGGAAACTAAA-GACGTGAGTGGAG----GGTAGAAAAGCTCATTAGACACTGACAGGTCAGTCAAGGC--GCGCGGT-GAGTTTCATCGCATTCAT-CC--AGGTTCCGCGCGCTCACTTTCACCTACACCTGGCCCGTTTCAAACAATTGAAA---CCGCA----------CCCGAACTAGAATA--AACTGCGGAGAACTTATTGGCATGTCGGGATGGGGAAGCTTTTCC--TTTG--------C-ACCGGTTTGATGCTT----TTTGACCGCCGAAAATTAAAACCGAACAGTGCTTCTGACGCTCAATTATA----AGCATTGTTTTATTGGTTTCCGt----------------------------------------cttttttttgtggaatGGGTTCCAGTAGGA
i caeRem4.Crem_Contig0  C 0 I 286
s caeSp111.Scaffold630  5981417 367 + 20921866 AGAAGCGGACG------AAGTCGGTAAAATGGT-GAATTGGGT--AG-AGAAGTAGACTAGCTCATTAGACGGTGACAGGTCAGTTGAGGCGGGGACACTAGAGTTTCTTCGCATTCAT-CC--TGGTTCCGCGCGCTCACTTACACCCGTTGCTGGCCCGTTTCAAACAATTGAAACCGCCGCA----------CCTGAACTAGAATATTAACTGCGCAATACTTA-TGGCATGTCGGGATAGG---GCTTTTCC--TTCATCTGCACAC-ACCGGTTAGATGCTT----TTTGACCGGCGA-ATTTAAAAACGAACAG-GCGTTTGCCGCTCAATTATGT---TTCTCtgttttattg--tttctt--------------------------G--GATTGGTTCTAGACAATTGTGTG-AATGGGTTCTAGTTAA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2282120 385 +  4147112 ggaaaacagTG------AAGTTAGGAAAACGGGAGAATTGGGT--AGAAGAAGTAGACTAGCTCATTAGACGTTGACAGGTCAGTTGAGGC-GGGACGGT-GAGTTTCTTCGCATTCAT-CT--AGGTTCCGCGCGCTAACTTTCACCTCCTGTTGGCCCgtttcaaacaattgaaa---ccGCA----------CCCGAACTAGAATA--AACTGCGCAATAGTTATTGGCATGTCAGGATTGG---GCTTTTCC--TTCA---ACACTC-ACCGGCTAGATGCTT----TTTGAACGGCAA-AATCCAAAGCGAACAGTGCTTTTGACGCTCAATTATA----TTCTGTGTTTTATTG--CTGCTTTATAGCCTCTGTGTACTTGTTTTCAAG--GATTGGTTCCAGAGAA-TATTAG-AATGGGTTCCAGTTGA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  178317 330 -   343467 TTGAACGAAAA------TTGAGGTGAAGA-----CGCATGGAT--CA----GGTGGCCAAGCTCATTAAACG-CGATGGGTCAGGC--GGT--CGGCAAT-GAGTTTCG-CGCACGCAT-TC--ACTTTCTGT-CGCTCGCTT----------CTGGCCCCTTTCGAACAATTGAAA---CCGCG---------GCGTGAACCAGAATG--AACCGCGTAATACGTGT----------------G---GCGTTTCC--TTTA--------T-GCTAGCCGGGAGCGCCAAATTTGA--AGCGA-ATCCGAATCCAAGCAACGCTTTCCA-GCTCAATTATGTATAATCTTTGTCTTATTAGATTGGCG--------------------CGGCAAA--GAAAAATGTATCTTAATTGAATTATTTCGGTTCCAGTCAGA
i caeJap4.Scaffold18142 I 85 C 0

a score=-461.000000
s ce10.chrX             3967009 2 + 17718866 AT
s caeSp111.Scaffold630  5981784 1 + 20921866 -A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2282505 1 +  4147112 -A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  178647 2 -   343467 GT
i caeJap4.Scaffold18142 C 0 I 147
e cb4.chrX              9096888 0 + 21540570 C
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=-288.000000
s ce10.chrX             3967011 6 + 17718866 CAAATA-
s cb4.chrX              9096888 6 + 21540570 CGAGTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  5981785 7 + 20921866 CAAGATA
i caeSp111.Scaffold630  C 0 I 157
s caePb3.Scfld02_0      2282506 7 +  4147112 CAAGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18142  178649 147 -   343467 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=1173.000000
s ce10.chrX             3967017 44 + 17718866 ACAATATTCGTTCAATTGGCGTTCCACAAACTAGAGTACATTGA
s cb4.chrX              9096894 33 + 21540570 --------ATTTCAATTG--GTTCCACAA-CCGGAGAACATTCA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2282513 33 +  4147112 -----ATGAAGTGCGTTG--GTTCTACTA----GAGTACATTAA
i caePb3.Scfld02_0      C 0 I 209
e caeJap4.Scaffold18142  178649 147 -   343467 I
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=148.000000
s ce10.chrX             3967061 4 + 17718866 ACAA
s cb4.chrX              9096927 4 + 21540570 AGAA
i cb4.chrX              C 0 I 1992
e caePb3.Scfld02_0      2282546 209 +  4147112 I
e caeJap4.Scaffold18142  178649 147 -   343467 I
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=0.000000
s ce10.chrX             3967065 962 + 17718866  
e caePb3.Scfld02_0      2282546 209 +  4147112 I
e caeJap4.Scaffold18142  178649 147 -   343467 I
e cb4.chrX              9096931 1992 + 21540570 I
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=251.000000
s ce10.chrX             3968027 4 + 17718866 AACA
s caePb3.Scfld02_0      2282755 4 +  4147112 AACG
i caePb3.Scfld02_0      I 209 C 0
e caeJap4.Scaffold18142  178649 147 -   343467 I
e cb4.chrX              9096931 1992 + 21540570 I
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=85.000000
s ce10.chrX             3968031 10 + 17718866 TTTATTTGGC
s caePb3.Scfld02_0      2282759 10 +  4147112 TTTTTTGTAC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18142  178796  8 -   343467 tttatttt--
i caeJap4.Scaffold18142 I 147 C 0
e cb4.chrX              9096931 1992 + 21540570 I
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=-1888.000000
s ce10.chrX             3968041 38 + 17718866 AATTCAAACAGCAAGAAAAAACATGGTATATT-AAATTG
s cb4.chrX              9098923 38 + 21540570 AATTTATTCTACGCAAAAATATATAGCAGAAT-ATATTC
i cb4.chrX              I 1992 I 8
s caePb3.Scfld02_0      2282775 34 +  4147112 AATTTATC-----AACAAACCAAAATCAGAATCATAATC
i caePb3.Scfld02_0      I 6 I 3
s caeJap4.Scaffold18142  178804 33 -   343467 atttcaaaattaaaaaaaatcagtattACATT-G-----
i caeJap4.Scaffold18142 C 0 C 0
e caeSp111.Scaffold630  5981792 157 + 20921866 I
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=-2106.000000
s ce10.chrX             3968079 20 + 17718866 ATTAGTAGTACAAAAGGTAT--
s cb4.chrX              9098969 18 + 21540570 CATAATAGGAAATGACGT----
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold630  5981949 18 + 20921866 ATTAGTAGTAAAcattgc----
i caeSp111.Scaffold630  I 157 C 0
s caePb3.Scfld02_0      2282812 18 +  4147112 ATAAGTCAAAAAACGTGT----
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18142  178837 20 -   343467 AAGAATTGAATAAATTGC--AA
i caeJap4.Scaffold18142 C 0 C 0
e caeRem4.Crem_Contig0   992004 286 -  4500979 I

a score=111171.000000
s ce10.chrX             3968099 329 + 17718866 ACAAAA-GC-------TTACAT-ATTAAC----------TCAATATGGTCTTGGATATCCTGGATACTGTCCGGGTGGAGGTGGAGGATAT-TGCCCTGTTGGTGGTGGTGGGTACATACCG------------------------------GCTGG---------------CGTGGCTCCGGT---------TCCAATTTGATATGGCTGCTGTTGTGGATAGCCTGGTGTGCTTGAGTATCCTGGGTTGC------------------------TTGGATACATGTTAGTTTG---ATAGGGTTGCTGTGGAAGTGGA------GGTGGTTGTTGG---TTGTACGCCGAG------TATCCTTGGGTTGGGAGTGGTGGGGCTTGTTGGACATATCC------ACTAGGATTCACTCCAGCACCGATTCC------CATAGGTGGTGGGGGTGC
s cb4.chrX              9098987 349 + 21540570 ACAAAATTC-------TTACAT-CGAAAATTCGGTAGAGTTAATATGGTCTTGGATATCCTGGATAT-----GGCTGGC-CTGGTGGGTAT-TGTCCagttggtggtggtggatATTGTCCA---------GGCGGGTACATTCCAGGCGCAGATGG---------------AGTGGCTCCAGT---------TCCGATTGGATATGGTTGTTGACT---------------------GTAGCCAGA------------------------------TGGATAGATGGTTGATCC---ACCGTATggttgtggtggtggtggcaTGCCTGGTTGCTGTCCTCCATAGGCAGAA------TATTGTTGAGTTGGAAGTGGAGGAGCTTGTTGTACATATCCTGGCATACCTGGTGTCACTCCTGCTCCGATTCCAGCTCccagtggtggtggtggtgc
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   992290 345 -  4500979 ACAAAA-GC-------TTACAT-CAACAA------GAATTTAATATCCTCTTGGATATCCtgggtat---ccagttggtggtggtgggtac-tgtccagt------tggtggatattgtccaggtggtggtggtggataCATACCTGGAGCAGCTGG---------------AGTGGCACCAGT---------TCCAATTTGATATGGCTGTTGTGG---------------------ATATCCGGGAGTGT------------------------TTGGATACATGCTCGA------ACCATATGGTTGTGGTGGAAGT------CCTGGTTGTGGTGGCCCATATGACGAG------TATTGTTGATTTGGAAGTGGTGGAGCCTGTTGCACGTATCCTGGCATACCTGGAGTTACTCCTGCTCCGATTCCAACTCCCATTGGTGGTGGTGGCGC
i caeRem4.Crem_Contig0  I 286 C 0
s caeSp111.Scaffold630  5981967 362 + 20921866 aaaaaatgaaaatgtgttACATGTTTTAA-------CAGTTAATATGGTCTTGGGTATCCTGGGTACTGTcctggtggtggtggtggataT-TGTCCAGT---CGGTGGTGGGTATTGTCCA---GTTGGTTGTGGATATTGTCCTGATACTGGTGGCGGATACATACCTGGAGCTGCTGGAGTAACTCCTGCTCCGATTGGAGTTCT---------------------------------TCCTGGATAACCAG---------------------TTGGATAAATGGTTGATCCTGGATATCCTGGTTGTGGTGGGTAT------CCTGGCTGTGAG---TTATAAGCAGAA------TACCCTTGATTTGGGAGTAGTGGTGCTGGTTGAGCAAATCC---CATACCTGGAGTGACTCCTGCTCCTACTCCGAT---------TGGTGGTGGTGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2282830 363 +  4147112 ACAAAATGC-------TTACAT-TCGCAA-------AAATTAATATCCTCTTGGGTATCCTGGATACTGtcctggtggtggtggtgggtac-tgtccagttggtggtggtggataTTGTCCT---GGTGCTGATGGATATGCTCCAGTTGGCTGTGGTGGATA---------AGTTGATGGAGTGACTCCAGCTCCGATTGGGGCACGTGGTTG------------------------GTATCCTGGATTGC------------------------TTGGATAAATAGTTGATCCTGGATATCCTGGCTGTGGTGGATAT------CCTGGTTGTTGG---TTGTAAGCGGAA------TA---TTGATTTGGAAGTGGTGGTGCTTGCTGAACATATCCTGGCATACCTGGAGTCACTCCTGCTCCGATTCCAACTCCcattggtggtggtggggc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18142  178857 307 -   343467 ----------------ACACGT-TTATAA--------GATTAATATCCTCTTGGATATCCTGGGTACGGTCCATTTGGTTGCTGTGGGTACATGAC----------TGGCGG------TCCA------------------------------GCTGG---------------AGTTGCTCCAGT---------TCCAATTTGATATGGCTGTTGTTGCTG------------------GTATCTTGGATCACTCGGATACGGCTGGTTAGGCTGACTTGGATACACATTTGGTCCAGGTGGGTACGGTTGTGGCTGTGGT------GGAATCATTTGT---CCGTACGGCGAAGGATTGTATCCTTGGTTTGGAAGTGGTGGTGCTTGTTGAACGTACCC---------TGGTGTGACTCCTGTTCCGATGCC----TCCAG---------------
i caeJap4.Scaffold18142 C 0 C 0

a score=75.000000
s ce10.chrX             3968428 16 + 17718866 -ATATGTGGCTCCGTAA
s caeRem4.Crem_Contig0   992635 14 -  4500979 -ATATCCGGACCC--CA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  5982329 14 + 20921866 -ATATCCGCCTCC--Ca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2283193 14 +  4147112 -aTATCCGGCGCC--CA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18142  179164  5 -   343467 CATAT------------
i caeJap4.Scaffold18142 C 0 C 0
e cb4.chrX              9099336 22 + 21540570 I

a score=204996.000000
s ce10.chrX             3968444 372 + 17718866 GGTCTTGGTGGCGGTGGAGCATATCCAACTCCG------------------------GCGCC---------AACTGGTGGTGGAGGGGCTCCATATGGAAGAGGCATAATTG---GAGTAACACCGAAGCCAACTGG---GGAACG------ATAAGAACCGTCACT---AGAGGAAGAACTTGAGGAGGAAGAA---------------CT---GCACGTGCGACGGCCGTACATCTGAAGAAAAAGTGT-AAGTTGAGGGGTTTAAAAGGGAAAAAAATCAAAC----AGA----AAGGTTGAA--AAACGATCGAT--TGTGAGTTGTTA------GTTTGCGATCCGCC--TATTGCCTCAAAAACGAGAAGGTTTCACAATGTGATACGGTTATCAGTTTGCATT--------GTCAGA-------------AGAAGTTTCTCG------TTTTTCCATAG-AGAAGAGCAAACAATGACGT
s cb4.chrX              9099358 415 + 21540570 GGacgtggtggtggtggagcatATCCAATTCCA------GATCCGAC------TCCTGATCC---------gagtggtggtggtggggcTCCGTATCCGATTGGCATGACTGTAGTTGCTGCACCGAAACCGATTGG---GACACG---TCGGAAGGAACCGCcgctagaagaagaagaacttgaggaagaggaagaagaa---------ctCCGGCACGGACGA---CCGTACATCTaaagaaaagcaacaaagttgagcgatttaaaagaa-gaaaagtcaaac----agagactagaaaaaaaGCTGTCGATCGATGGTATGAATTGCGAATAGGGGTGGGTGAACCGCCTTTTTTGCCTCAACAA--------TTC--AAACGTGATACGGTTATCAGTTTGCATT--------GTCAGAAG---GCGAAAGAAGaagtttctcg------tttttcaatcG-AAAAGAGCAAACAATGACGT
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   992651 409 -  4500979 GGCCTTGGTGGTGGTGGGGCATATCCAGCTCCAAGAGGTGGTGGGGC---ATATCCAGCTCC---------AAGTGGTGGTGGGCCAGCTCCATATCCGATTGGCATTGTTG------------CGACTCCAACTGGTACTACACGAGCACGATAAGAACCGCCgctagaagaagaagaacttgaggaagaggaagaagat---------ctCCGGCACGAGCGA---CCGTACATCTaaagaaaagcaacaaagttgag-ggtttaaaaagg-caaaagtcaaac----agagactagaaaaaaa--tgacaatcgAT--TGTGAATTGTAA------GTGGGCGAACCGCC--TTTTgcctcaaaaa------gtttt--caacgtGATACTGTTATCAGTTTGCATT--------gtcagaagaaaacgaaag-agaagTTTCTCG------TTTCTCAATCG-AAAAGAGCAAACAATGACGT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  5982343 374 + 20921866 ----ttggtggtggtggagcaTATCCGGCTCCA------------------------GATCC---------aa---gtggtggtggtggtcgTCCTCCGTACATTGTTGTTG---------CACCAATTCCAACTGG---AACACC---GCGAAACGAGCCGCTgctagaagaagaagaacttgaggaagaagaagaagaagaggaggatctTCGGAACGTACGA---CCGTACATCTAAAGAAAAGCAACAAAGTTGAGAGGTTTAAAAAGG-CAAAAGTCAAAC----AGA-ACTAGGAATAAA--AAACGATCGAT--TGTGAATTGTTA------GTGGGCGAAACGTC--AATTGcctcaaaaacga----------aaatgtgATACGGTTATCAGTTTGCATT--------GTCAGA-------------AGAAGTTTCTCG------TTTCTCAATCGAAAAAGAGCAAACAATGACGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2283209 378 +  4147112 GGTCTTGGTGGTGGGGGAGCATATCCGATTCCA------------------------GCTCc---------aagtggtggtggtggtggtcctCCTCCGTACATTGTTGTTG-----------CCAA-TCCAATAGG---GACACG---TCGAAATGAGCCGCCGCT---AGAAGAAGAACttgatgaggaagaggaagaa---------ctGCGGCACGAGCGA---CCGTACATCTAAAGAAAAGCAACAAAGTTGAGGGGTTTAAAAAGG-CAAAAATCAAATAGAGAGA-AGTAGGAATAAA--AAACGATCGAT--TGTGAATTGTAA------GTGGGCGAAACGTC-TTTTTGCCTCAAAAACGACAAGTTTT--CAATGTGATACGGTTATCAGTTTGCATT--------GTCAGA-------------AGAAGTTTCTCG------TTTCTCAATCG-AAAAGAGCAAACAATGACGT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18142  179169 388 -   343467 GGTCGTGGTGGCGGGGGCGCGTAACCAACTCCA------ACGCCGGTTCCAATACCAGCTCCTGGAACCGGAAGAACTGGTGGTGGGGGTCCGTATCCGCTGTTCATTGTAG---GGGCAGTAGCAAATCCAATAAC---TGGGCGAGCACGATACGATCCGTC---------AGAAGAACTTGAGGAGGAAGACGAGGAAGAA------CTGCTGCACGAGCGA---CCGTACATACTGAGCTACGCAAC-AAGTTGAGATGTTTATATAAC-GA--------------CTA---------------AGGcaatcgat--tgaaaaaagaaa------gagggCGAAACGTC--T---------AAAATGAAAGTTTTC--GAAGGCGATACGGTTATCAgtttgcatttcatttcagTCAGA-------------AAA---ttcgcgattttttttttggacag-AGGAGAGCAAACAATGACGT
i caeJap4.Scaffold18142 C 0 N 0

a score=16838.000000
s ce10.chrX            3968816 133 + 17718866 ATATGGAAACGAATGAACAAAAAAGAAACGAGGGCGTTTT-CAGTGTATATTTTGAAACTTTCTTTGCAATCCA--TGAGTCATGAG-GATAGATCATGGACATGACCTTC-----TGGATGATTCAATGGGA-----------AGGAAGATT-
s cb4.chrX             9099773 117 + 21540570 ATTC-GAAAT-----------TGGCAA-----GGCGTTTCACAGtgtatattttgaaatttttcgacaatttcgAATGAATCATCAATACAAGA------TCATGACCTTC--ACAGGAATGACTCAATGGGA-----------AGGGAATAG-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  993060 114 -  4500979 ATTC-GACGTT-------GAATGGGAA-----GGCGTTTT-CAGtgtatattttgaaattttggtcaaGTTTTG--TGAATCATCGA-ATAGTA------TCATGACCTTC--AT---GATGAGTCAAtggga-----------agaagaatg-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5982717 131 + 20921866 ATT--GATGTG-------GAAAGGGATA----GGCGTTTT-CAGtgtatattttgaaatattggtctttttcga--tgaatcaTAAG-GAAGGA------ATATGACCTTAGAAAAGGGATGAGTCAAGGGAAGAGATCGAACGAATAATGATT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2283587 121 +  4147112 ATTCGGttgtg-------aaaagtgaaat---ggCCTTTT-TAGtgtatgttttgaaat-ttcgtcaaatttga--tgaatcaTCAG-GATGGA------ATATGACCTTAG-GATGATATGACTCGATGgga-----------agtgaaaatt
i caePb3.Scfld02_0     C 0 I 298

a score=-10043.000000
s ce10.chrX            3968949 108 + 17718866 ACATTCAT---TTGAATTTATAATAGGAATAATATCGAAATGTCAAACTGGAA--------------TGCCAATCAAATACAAACGTCA---AA--AAAATTATCAGGA------------AGAATGGAAAAGATCAGGGCA
s cb4.chrX             9099890 129 + 21540570 A----TATGGGTCTCATGGATGACtagaattgtt-gaaaatggCAAATAAACAAAAGTTCTG------AGGAAGAAAAGGGGAATGCCAAtcaattaaaaagaaaatgacatTTGCGACAGAGACTGAAAAg--ctaaagaa
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0  993174 136 -  4500979 agattTATTGCGTTTATCGATGaggaagaaagttcaaaaatgtcaaattgacgGTGGACACGAcatttaaaaactaaacagaaattcca--caa--aaaataaaaatgaattcgaatgaagcaaatgaaaca--acaGAGCA
i caeRem4.Crem_Contig0 C 0 I 221
s caeSp111.Scaffold630 5982848 106 + 20921866 -----CATAGGTCATCCGAATGTATGaaataatc--accacatcaacttcaaaatatcaatcaaatttcaaaaacgcatcaaaatgcca-------aaaGTCACAAGGC------------AGACTTACATA----------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2283708 298 +  4147112 I

a score=-1145.000000
s ce10.chrX            3969057 37 + 17718866 ---ATATTTTAAAATT-----CAAAACTTTTTCTTGAATTAAGCC
s cb4.chrX             9100021 43 + 21540570 ataattttgttaACTCAACagcaaat--ttttattcaataaatTC
i cb4.chrX             I 2 I 142
s caeSp111.Scaffold630 5982954 29 + 20921866 ---ATATTTCGAAGCC--TAGCaaacaatttcat-----------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2283708 298 +  4147112 I
e caeRem4.Crem_Contig0  993310 221 -  4500979 I

a score=-1189.000000
s ce10.chrX            3969094 95 + 17718866 AGTCTGCTCTCCGTCGGTCTTGTTGTAAGTTAAATCCAAGCTTCGCTCGACTTTTCAGGAAAGACTGGCTGTAGTCTGGAGGTAAGAAATGCTGA
s caeSp111.Scaffold630 5982983 52 + 20921866 -----------------tttgattcttacttcattcaaaaaatc-----aattcttaGGAAGAA------------------TCAGGAATTC---
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2283708 298 +  4147112 I
e cb4.chrX             9100064 142 + 21540570 I
e caeRem4.Crem_Contig0  993310 221 -  4500979 I

a score=0.000000
s ce10.chrX            3969189 5 + 17718866 CCTTA
e caePb3.Scfld02_0     2283708 298 +  4147112 I
e cb4.chrX             9100064 142 + 21540570 I
e caeSp111.Scaffold630 5983035 0 + 20921866 C
e caeRem4.Crem_Contig0  993310 221 -  4500979 I

a score=-16860.000000
s ce10.chrX            3969194  79 + 17718866 AGTTTGAC----CGCGACAAC------CATCCAGACTGAGCCATCC---------------GGACAACTTTCAACCCTATTGGGTCTGTA-----AGTTTCTTTTACAA
s cb4.chrX             9100206  93 + 21540570 ATCTTTTCATACTCCAATGAC------AACAGAATGTTTG---TACCTTCCGATTTTcaccgga-attttttttccttgttgACTGCAAA-----AATTGTGTTAAAA-
i cb4.chrX             I 142 C 0
s caeSp111.Scaffold630 5983035  26 + 20921866 ------------CTTAGTCAC----------------------TCCTTTT---------------------------------------------GGTCTCATTG----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2284006 103 +  4147112 AGTTCGACAAGACATAATCATCTGAGGAACAAAGAATGTGTCATCCTTTTCAGTAATGA--GGA-AGGCTGGATC--GATTAACATGAGATGTCAGATGttattgaag-
i caePb3.Scfld02_0     I 298 C 0
e caeRem4.Crem_Contig0  993310 221 -  4500979 I

a score=-14353.000000
s ce10.chrX            3969273 54 + 17718866 -TTTTAACAG-----------------ACTTTTGAAACTCAATTACGATTTAATTTTGT--------------TTTTCAACTTCAA
s cb4.chrX             9100299 78 + 21540570 -CTAGAACAAAATAACAACCAAGAAATATTCTTGATA-------AAGACAGAACATTGTCATCATTTatacgtttttcaaaaacaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  993531 35 -  4500979 -TTATATTAA-----------------ATGTTTGAGA-------AACATACCATCTTGT--------------------------A
i caeRem4.Crem_Contig0 I 221 C 0
s caeSp111.Scaffold630 5983061 31 + 20921866 -TTCAGACATTGga------------------------------------taaaattgt--------------ttt--cacaCT--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2284109 65 +  4147112 tttcaaaagttatacAATCCAAGAAACATTGCCGAAA-------Aaccattaaaatttt--------------ttttctaaaccaa
i caePb3.Scfld02_0     C 0 I 198

a score=-23435.000000
s ce10.chrX            3969327 117 + 17718866 TGAATTTTATTGTGTATTAGTTCTTG----------AATCCGTGTAATTTTAATAACTA--T-------TTCAGTC---CGTTTTGCAAACCAGAAAGGCCGATCAATACACTTCCTAGCTAAGATTTTCTGCGCCTAT--------------------
s cb4.chrX             9100377 134 + 21540570 -------tgagGAATAATCAATTTCTAaggaaaatgtgttttttcaaTTAGCAATAACA--CTGACtcgttcaaaa---acttttatgaAAC-GTGGGTCAGATTAAAATGATTTCAATCAAatgattgct-----cattttc-------tcatttcct
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  993566 121 -  4500979 -------TTATAGATCACCGTTGACTATGAAGTAT-TTTGCtattaattttcaagaata--C-------TCCAAAGGATAACTTTAT--------------GATTGTTGTGATTTTATCC--ATGTTCTCT-----TGTCATCATATCCATGATATCct
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983092  54 + 20921866 ----GTGTAGCGGCTATTCGTTGTTT----------TCACCAATCGAATTTCGGGGAAAGGC-------CTCAGC------------------------------------------------------------------------------------
i caeSp111.Scaffold630 C 0 I 1
e caePb3.Scfld02_0     2284174 198 +  4147112 I

a score=-12247.000000
s ce10.chrX            3969444 326 + 17718866  
s cb4.chrX             9100511 393 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  993687 374 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983147 269 + 20921866  
i caeSp111.Scaffold630 I 1 C 0
s caePb3.Scfld02_0     2284372 267 +  4147112  
i caePb3.Scfld02_0     I 198 I 25

a score=-295.000000
s ce10.chrX            3969770 11 + 17718866 TTACATCATCT
s caeRem4.Crem_Contig0  994061 11 -  4500979 TTACATGATCC
i caeRem4.Crem_Contig0 C 0 I 115
s caeSp111.Scaffold630 5983416  2 + 20921866 tt---------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2284639 25 +  4147112 I
e cb4.chrX             9100904  0 + 21540570 C

a score=-838.000000
s ce10.chrX            3969781 65 + 17718866 TCTACGAGTTTAACAATTTGTGaaaattataataattatgaaaagtaatttgaattatattaaaa
s cb4.chrX             9100904 41 + 21540570 -----------AACGTTGAATGAAAAC--------TTATGCAACA----TTTGATGCTTTCATA-
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5983418 41 + 20921866 --------tttcacaatttatgaaaat--------ttacatatca-------aattttttcaaa-
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2284639 25 +  4147112 I
e caeRem4.Crem_Contig0  994072 115 -  4500979 I

a score=-9807.000000
s ce10.chrX            3969846 76 + 17718866 CAATTTCTCACGATTAGCAATTTTGATTGTTAGAAATCCTATTCCTAACCAAAACTTTCGAA--AAAGTCATAC----TCTG-------
s cb4.chrX             9100945 34 + 21540570 CGATTTCT--------------------------------------------------CGACTCCACTCCTCATTGTTTCCACG-----
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5983459 50 + 20921866 ----tcct----------------------------------tCAGAATCGAATTTAATGAATCAGCTGCCTAC-ATATCCTAATCTGC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2284664 47 +  4147112 ccatttct----------------------------------ttcgAGGCAAGACCAGTAAA-CAAAGGCACAC----TCCAAATA---
i caePb3.Scfld02_0     I 25 C 0
e caeRem4.Crem_Contig0  994072 115 -  4500979 I

a score=-7137.000000
s ce10.chrX            3969922 87 + 17718866 CATTTTCAAGGTCAATGCTTACTGCGTTCAGAGTTTTCTTGTTTAGTAGAGACGCAG---ATAGACTTGTT-------TATTGGTTTG--TGACTAGTC
s cb4.chrX             9100979 59 + 21540570 AGTTTTCTCATTCAA-----------TTCAG---ATTGTC--CCAACTAGTAGAGGA-----AGATTAATG-------------------TGACCAGTC
i cb4.chrX             C 0 I 139
s caeRem4.Crem_Contig0  994187 90 -  4500979 CGTCTTAAAGGTCAACCTTC------CTCTG---TTTGTTAACCAGatagtgagagacgcagagactaGTTGTTACTCCTTCTCTCTGACTGCCTAGTC
i caeRem4.Crem_Contig0 I 115 C 0
s caeSp111.Scaffold630 5983509 79 + 20921866 CGTCTTGGAGGTCAATGctt------t-ttg---tttgttgtttACTAGGATGGAGG---AGAGGTTTACT-------CCTTTCTCTGACTGCCTAGCA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2284711 54 +  4147112 ---CTTGAAGGTCAATGCTT------TCTTG---TTTGTGGCTgagaaagatagaga---tgag------------------------------tggaa
i caePb3.Scfld02_0     C 0 C 0

a score=-5919.000000
s ce10.chrX            3970009 43 + 17718866 GACCACACGCAG-------AGCGCTATTCACGAGAGCGTGCATGTGTAGG
s caeRem4.Crem_Contig0  994277 39 -  4500979 ------ATCCAGTCTCCTTTTCCCTTCC-----GAGCGTCAATGTCTATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983588 32 + 20921866 ------GTCCAG-------TGCGCTCTC-----TAGTGTCTATGTCACCC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2284765  6 +  4147112 ------gaggag--------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9101038 139 + 21540570 I

a score=1662.000000
s ce10.chrX            3970052 14 + 17718866 AAGAGGCGTTCACG
s cb4.chrX             9101177 14 + 21540570 AAATGGTGTTCTTT
i cb4.chrX             I 139 C 0
s caeRem4.Crem_Contig0  994316 14 -  4500979 GAATGACGTTCTCG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983620 14 + 20921866 AAAAGACGTTCACG
i caeSp111.Scaffold630 C 0 I 6
s caePb3.Scfld02_0     2284771  7 +  4147112 -gaagagg------
i caePb3.Scfld02_0     C 0 C 0

a score=-672.000000
s ce10.chrX            3970066 6 + 17718866 ACGAGA
s cb4.chrX             9101191 6 + 21540570 CCGCGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  994330 6 -  4500979 CACCGA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2284778 3 +  4147112 ---agg
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 5983634 6 + 20921866 I

a score=46514.000000
s ce10.chrX            3970072 87 + 17718866 CGTGGCCGGATGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGATCGATCCCCGGTCCGGCCCACTTACTTTTTT
s cb4.chrX             9101197 87 + 21540570 TGTGGCCGGATGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGATCGATCCCCGGTCCGGcccaccttttttttg
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  994336 87 -  4500979 CGTGGCCGGATGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGATCGATCCCCGGTCCGGCCCActtactttttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983640 87 + 20921866 CGTGGCCGGATGGTCTAGTGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGATCGATCCCCGGTCCGGCCcaccaattttttg
i caeSp111.Scaffold630 I 6 C 0
s caePb3.Scfld02_0     2284781 66 +  4147112 aggaggaggagaactGAGCGGTTTACTTCTTTCTC------CGACTAGTTCCGAGA---------------GACCACCCTCTCTATG
i caePb3.Scfld02_0     C 0 C 0

a score=286.000000
s ce10.chrX            3970159 6 + 17718866 CCTTGT
s caeRem4.Crem_Contig0  994423 6 -  4500979 cattat
i caeRem4.Crem_Contig0 C 0 I 19062
s caeSp111.Scaffold630 5983727 6 + 20921866 aatttt
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2284847 0 +  4147112 C
e cb4.chrX             9101284 0 + 21540570 C

a score=-4174.000000
s ce10.chrX            3970165 49 + 17718866 AGCGAATGGTTATATGCTTTTGA----------TGTATTATGCATATGGTTATTTCAGG
s caeSp111.Scaffold630 5983733 54 + 20921866 gg-gaatga----atcttttttaattaaaataatATATGTTGTGAATTGTTATTGGAGG
i caeSp111.Scaffold630 C 0 I 22
s caePb3.Scfld02_0     2284847 11 +  4147112 --------------TCTCTTCCA------------------------------TG----
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9101284  0 + 21540570 C
e caeRem4.Crem_Contig0  994429 19062 -  4500979 I

a score=-795.000000
s ce10.chrX            3970214 26 + 17718866 AAAACTACAATACATATCAGCTCGAA
s caePb3.Scfld02_0     2284858 15 +  4147112 AACTTCAAGCTGCGT-----------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9101284  0 + 21540570 C
e caeSp111.Scaffold630 5983787 22 + 20921866 I
e caeRem4.Crem_Contig0  994429 19062 -  4500979 I

a score=12183.000000
s ce10.chrX            3970240 44 + 17718866 ACGTGGCCGGATGGTCTAGTGGTATGATTCTCGCTTAGGGTGCG
s caePb3.Scfld02_0     2284873 43 +  4147112 -CGTGGCCGGATGGTCTAGtggtatgattctcgcttagggtgcg
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   94683 44 +   152914 ATGTGGCCGgatggtctagtggtatgATTCTCGCTTAGGGTGCG
i caeJap4.Scaffold1521 N 0 C 0
e cb4.chrX             9101284  0 + 21540570 C
e caeSp111.Scaffold630 5983787 22 + 20921866 I
e caeRem4.Crem_Contig0  994429 19062 -  4500979 I

a score=12530.000000
s ce10.chrX            3970284 36 + 17718866 AGAGGTCCCGGGATCGATCCCCGGTTCGGCCCGCTT
s caeRem4.Crem_Contig0 1013491 31 -  4500979 AGAGGTCACGGGATCGAGcccccgttttttt-----
i caeRem4.Crem_Contig0 I 19062 C 0
s caePb3.Scfld02_0     2284916 36 +  4147112 agaggtcccgggATCGATCCCCGGTCCGGCccacct
i caePb3.Scfld02_0     C 0 I 6
s caeJap4.Scaffold1521   94727 36 +   152914 AGAGGTCCCGGGATCGATCCCCGGTCCGGCCCACCT
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9101284  0 + 21540570 C
e caeSp111.Scaffold630 5983787 22 + 20921866 I

a score=-24974.000000
s ce10.chrX            3970320  74 + 17718866 --AATTTTTTGATGT------ATTTTGTTA---AGTGTTTT--------TATGATTGTTTGGAATTAT---------------------------------------------AAAAATTTAGTT-------------------------------GATATTTGCGAAT
s cb4.chrX             9101284  60 + 21540570 --aatttttgaaagt------tatttgcttcacaatattt---------caagattatttgaagtttt---------------------------------------------tgaactta-----------------------------------------t------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1013522  58 -  4500979 --ttgttttcaatat------aaCCTGTTT---AGTATTTA--------TAAGTGTGTTAGAA--------------------------------------------------TGAACTTGAGC------------------------------------TCT------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2284958  33 +  4147112 --tttctttgagtgt------aattttgtc---aatttat---------taac--------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0     I 6 C 0
s caeJap4.Scaffold1521   94763 158 +   152914 TGtttttttGGAGCTcaagaaagttttatt---tttatgttcCGGCCTCTAATACTTTTTTAACCCATGTTAAAATGCACACGGGCCTGTGTATCTTAACAAATCTCATTAAACGAATTTAAGCTTTTCTAATTGTATGTTCtcctgcattaaaaaaaaat--------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5983787  22 + 20921866 I

a score=138434.000000
s ce10.chrX            3970394 464 + 17718866  
s cb4.chrX             9101344 513 + 21540570  
i cb4.chrX             C 0 I 24
s caeRem4.Crem_Contig0 1013580 472 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5983809 460 + 20921866  
i caeSp111.Scaffold630 I 22 C 0
s caePb3.Scfld02_0     2284991 458 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   94921 533 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-5369.000000
s ce10.chrX            3970858 28 + 17718866 TGAGTAGGACAAACGATGAACGTTATTG
s caeRem4.Crem_Contig0 1014052 23 -  4500979 -----ATAATGATTGATAGTCTATATGG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5984269 26 + 20921866 TGATATTG--GCTAGACGGATTCTATTG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2285449 28 +  4147112 TGATTGTGATGGGAAATAGGTCCTTTAT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   95454 19 +   152914 -----ATATTCGCATGCGGATATT----
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9101857 24 + 21540570 I

a score=219180.000000
s ce10.chrX            3970886 277 + 17718866 CATA-TTGCGTAACGAAAAAAAGGGATTTACAA-----TATA--CAAGTCAATAAATA-----AAAGTTAGC--------CTAGAA---CGTACCAATTGCGTCATAGTTGGTGATGCGGAACATAAACTCGCAATGAACGTTGCGTGGGAGAGGCATCTCATAACTTGTGGACGGGGCAGGTAGGTATACTGTCGTTGGGTCCTTATTGCAAGGGCCAAGGTATGCTTGGTAGGTTATTGCATAGGTTAGAATGTTTTCTGGTTCAGCCGATGCGGTCCAGGTTATCATTGCGGTAGAGT
s cb4.chrX             9101881 283 + 21540570 CGTG-TTGCGTAACGCAATAAA--GATTTACTAC----Ggta--aatattgagaaacaaaaa-aaagttggg-----aagGACCAA---CATACCTATTGCGTCATAGTTCGTGATACGGAACATAAACTCGCAGTGAACGTTGCGTGGCAGTAACATCTCATAACTTGTGGATGGTGCTCCCAGGTATACAGTTGTTGGATCTTTGTTGCATGGTCCGAGGTATGCTTGGTAGGTGATGGCGTAGGTCAGGATGTTTTCAGGTTCAGCAGAGGCTGTCCATGTGATTTGAGCAGTCGAGT
i cb4.chrX             I 24 C 0
s caeRem4.Crem_Contig0 1014075 294 -  4500979 -ATGATTACGTAACGCAATAAA--GATTTACAAC-CTGTGCA--CAGGTCAGTAAATATTAA-AAAGTTAGGCGAAAAAGAACCAATATCGTACCTATTGCATCATAGTTTGTGATGCGGAACATAAACTCGCAGTGGACATCTCGTGGGAGAGGCATCTCATAACTTGTTGATGGAGCAGGCAGGTACACTGTTGTTGGATCTTTATTGCATGGTCCAAGGTACGCTTGGTAGGTCACAGCGTAGGTTAGGATGTTTTCAGGTTCAGCGGATGCAGTCCAGGAAATCATTGCCGTAGAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5984295 280 + 20921866 CAGA-TTGCGTAACACAATAAA--GATTTACAAC-CTGTGCACGTCAGTAAATAAATATTCC-AAAGTTAG-------------AA---CGTACCTATTGCGTCATAGTTGGTGATACGGAACATAAATTCACAGTGAACATTGCGTGGGAGAGGCATCTCGTAACTTGTTGAAGTAGCAGCCAGATAGACAGTAGTCGGGTCTTTGTTACAAGGTCCCAAGAACGCTTGATAGGTGATAGCATACgtcaaaatgttttctggTTCGGCAGATGCTGTCCATTTGATCATTGCTGTTGAGT
i caeSp111.Scaffold630 C 0 I 11
s caePb3.Scfld02_0     2285477 284 +  4147112 CGTG-TTACGTAACACAATAAA--GATTTACAAC-CTGTGCA--TAGGTCAGTAAATATTAAGAAAGTTAGA--------ATCAAA---CGTACCAATTGCGTCATAGTTGGTGATACGGAACATAAACTCGCAGTGAACGTTTCTTGGAAGAGGCATCTCGTAACTTGTTGATGGAGCAGCAAGGTACACGGTTGTAGGATCTTTATTACATGGCCCCAGGTACGCTTGATAGGTTATGGCGTAGGTAAGAATGTTCTCTGGTTCAGCCGATGCCGTCCATTTTATCATTGCAGTGGAGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   95473 284 +   152914 -CAG-TTGCGTCACACAATTGA--AATTTACAACTCTGCCCA--ATGGACAGCAAATATTAA-AAAGTTAGA-------TGGACTA---CGTACCGATTGCGTCATAGTTGGTGATGCGGAACATAAACTCGCAATGTTTATTGCTGGGAAGTGGCATCTCGTAGCTAGTGGATGGTGCGGCTAGATATACAGTTGTGGGGTCCTTGTTGCATGTTCCTAAGAATGCTTGATAGGTAATAGCATAGGTCAAAATGTTTTCCGGTTCTGCAGACGCAGTCCAAGTGATCAAAGCGGTTGAGT
i caeJap4.Scaffold1521 C 0 C 0

a score=16660.000000
s ce10.chrX            3971163 69 + 17718866 TGGGTTGGATTGCCACTCGGATATTGGAGACAGATTCGGGGGCTGAAAATTTAGTTTTTCATTTAAATT
s cb4.chrX             9102164 67 + 21540570 TGGCTTCAATAGCTACACGGATATTTGAAACTGGTTCCGGGGCTG-AAAtatatagtttttttctgga-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1014369 56 -  4500979 TGGCTTCAATTGCAACTCTGATGTTGGAGACGGGTTCTGgagctg-aaattcagatt------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2285761 58 +  4147112 TGGCCTCAATCGCTACTCGGATGTTGGATACTGGTTCTGGGGCTGAAAATACAAAGTT-----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   95757 46 +   152914 TTGGTCGAACGGCAACTCGGATGTTAGAGACTGGTTCGggagcttt-----------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5984575 11 + 20921866 I

a score=-10114.000000
s ce10.chrX            3971232 88 + 17718866 AAGAATTGCACAACACAACACACAATTCAAAGAAAAATAACCGATAATTGTAGTTTATAAGCTGGTAGGTGTTAGAAATATGAGAAAG
s cb4.chrX             9102231  7 + 21540570 ----------------------------------------ccCATAA-----------------------------------------
i cb4.chrX             C 0 I 4
s caePb3.Scfld02_0     2285819  6 +  4147112 ------------------------------------------GAGAAT----------------------------------------
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold1521   95803 13 +   152914 -----------------------------------------aaaaaatggtgtt----------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5984575 11 + 20921866 I
e caeRem4.Crem_Contig0 1014425  0 -  4500979 C

a score=0.000000
s ce10.chrX            3971320 18 + 17718866 TGGCTTAAATTACTGCAA
e caePb3.Scfld02_0     2285825  4 +  4147112 I
e caeJap4.Scaffold1521   95816  0 +   152914 C
e cb4.chrX             9102238  4 + 21540570 I
e caeSp111.Scaffold630 5984575 11 + 20921866 I
e caeRem4.Crem_Contig0 1014425  0 -  4500979 C

a score=-23357.000000
s ce10.chrX            3971338 79 + 17718866 ATTTGTCGATTTCCGTCAATCAAATACATTTTTACAAGCTGCTCATAAATTTTGCGTTTGGTTTAATAAACGTTCAGTC
s cb4.chrX             9102242  4 + 21540570 ---------------------------ATTC------------------------------------------------
i cb4.chrX             I 4 C 0
s caeRem4.Crem_Contig0 1014425 16 -  4500979 --------att-------ttcagattgagcT------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5984586 25 + 20921866 ------------------GCTACACGAATGTTGGAAA--------------------CTGGTT----------------
i caeSp111.Scaffold630 I 11 I 3
s caePb3.Scfld02_0     2285829 19 +  4147112 ------------------GTCTGACGAATAT--------------------------CATGTC----------------
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold1521   95816 13 +   152914 ------------------tttaattttaatc------------------------------------------------
i caeJap4.Scaffold1521 C 0 C 0

a score=-15840.000000
s ce10.chrX            3971417 108 + 17718866 CAAAAAAAATAAACTATGGAAATTTAATTTCCGCGTAAAATCATATGTTTGTGAAATTCAAGTTTAGCTTTCAGTTCCAATTTTTCGGACATTTCCATATTTCGCCCA
s cb4.chrX             9102246  10 + 21540570 -----CAGATAAAAT---------------------------------------------------------------------------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1014441  10 -  4500979 -----CACATAAAAT---------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5984614  33 + 20921866 -----GGGCTagaatttagaaatttcatttttg-----------------------------------------------------------ttcca-----------
i caeSp111.Scaffold630 I 3 C 0
s caeJap4.Scaffold1521   95829  14 +   152914 -ttAAAAACTAATTT---------------------------------------------------------------------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2285848   0 +  4147112 C

a score=470165.000000
s ce10.chrX            3971525 742 + 17718866  
s cb4.chrX             9102256 733 + 21540570  
i cb4.chrX             C 0 I 27
s caeRem4.Crem_Contig0 1014451 728 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 22
s caeSp111.Scaffold630 5984647 689 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2285848 693 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   95843 645 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-869.000000
s ce10.chrX            3972267 26 + 17718866 T----TTATTGCCTTAAACTTTTAAACA-----CT
s caeJap4.Scaffold1521   96488 32 +   152914 caataatattggC---AAATACAAAATAATTTGCT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2286541  0 +  4147112 C
e cb4.chrX             9102989 27 + 21540570 I
e caeSp111.Scaffold630 5985336  0 + 20921866 C
e caeRem4.Crem_Contig0 1015179 22 -  4500979 I

a score=234559.000000
s ce10.chrX            3972293 334 + 17718866 TACAGATGCAGTAATCCATTGACTCTCATCATAGTATCCCAATGCATAAGTTCGCTGCTTCCACTGCACAACATACTGTACCGGTCCAGATGGGCGAATTTTCGTCAGGCCAAGGAGTCCCTATAATTT----TTGAGAGCTATTA-TTT---ATTGACACCTCATGAGTCACAAA-----------ACATAAACAATGACAGTTATCGTCTCCTTTCCTCCCCCTCTCCCCATGATCCCTTTTCTCACCTCAAATGAGTCGTCCAAATCGGGTGTTGCAGAAGGCATCTGGCACAATAATTCAGCTGACGAGATTGGAGATGAGCCCACTTTTCCTATAAA-TTAGCTCAAGT---------
s cb4.chrX             9103016 326 + 21540570 TACCGATGCCGTAATCCATTGACTTTCATCATAGTATCCAAGGGCATAAGTTCTCTGCTTCCATTGCACAACGTACTGTACCGGGCCAGATGGACGAACTTTTGTGAGGCCAAGGAGTCCCTATAATTGAGTTATATACTTATTGC-CTT---TGTGACACCTCATGAGT--CAAAATACGCAACACACAGTAACAATGACATTTATCCCTTATTTACTT--CTACCTCCCACTGGTGCGTTTTCTCACCTCAAACGAGTCGTCCAAATCAGGTGTTGCTGATGGCATCTGGCACAGTAACTCAATTGTAGAGACTGGGGAAGATCCAACTTTT-----------------------------
i cb4.chrX             I 27 C 0
s caeRem4.Crem_Contig0 1015201 318 -  4500979 TACCGAGGCAGTAATCCATTGACTCTCATCATAATATCCAAGTGCATAAGTTCTTTGCTTCCATTGAACAACATACTGTACTGGACCAGATGGCCGGATTTTCGTCAAACCCAGAAGTCCCTGTAATTG----------TTATTAA---T---TATGACACCTTATGAgt--caaa-----------acagaaacaatgACATTTATCTCTTTGACACC------CCTCCCCATGAGCCCTCTTCTCACCTCAAATGAGTCGTCCAAATCGGATGTTGCTGATGGCATCTGACACAATAATTCCACGGAGGAAACCGGCGATGACCCaacttttcctgaaaa-taaattttggt---------
i caeRem4.Crem_Contig0 I 22 I 24
s caeSp111.Scaffold630 5985336 322 + 20921866 -ACAGAAGCAGTTATCCATTGACTCTCATCATAATAACCCAACGCATAGGTTCTTTGCTTCCATTGAACCACATATTGTACAGGTCCAGATGGACGAACTTTTGTCAAGCCAAGAAGTCCCTATAATTA----TCatgatttcttcttgt---tttgacACCCAAT-------ATG-----------ACATAAACAATAACAGTTATCTCCATGTTTCTC-----TCCCCCCATGAGCCCTTTTCTCACCTCAAATGAGTCGTCTAAATCTGGTGTCGCAGATGGCATCTGGCACAATAATTCAACAGCGGATACAGGAGATGATCCCACTTTTCCTGAATA-AAAATCCAGTT---------
i caeSp111.Scaffold630 C 0 I 7
s caePb3.Scfld02_0     2286541 323 +  4147112 -ACTGATGCTGTAATCCATTGGCTTTCATCATAATATCCCAAAGCATATGTTCTTTGCTTCCATTGCACAACATACTGTACTGGGCCAGATGGACGGATCTTTGTCAGACCAAGAAGTCCCTATAATTA----GTATAGTTAAATC-TAT---TTTGACACCTCATGATT--CATA-----------ACATAAACAATGACAGTTATCCC----TCCCCT-----CCTCCCCATGAGCCTTTTTCTCACCTCAAATGAATCGTCCAAATCGGGTGTTGCAGATGGCATCTGGCACATTAATTCCACAGCGGAAACTGGTGATGATCCAACTTTTCCTGAATATTAAATGTGTGA---------
i caePb3.Scfld02_0     C 0 I 10
s caeJap4.Scaffold1521   96520 316 +   152914 AACCGAAGCAGTAATCCATTGACTCTCATCATAATATCCCAGTGCATAAGTTCTTTGTTTCCATTGAACAACGTATTGTACTGGACCAGATGGGCGAACTTTTGTCAAGCCAAGAAGTCCCTGTAATTG----AAATAATAAACAT-TATGAGATTGCCACCTC--------TAGG-----------A---AAACAATAACAGTTA-------------------TTTCCTTATGAGCTCTTTTCTCACCTCAAACGAATCGTCCAAATCGACTGTGGCAGACGGCATCTGGCACAACAGCTCAGCAGATGAGACTGGTGAAGATCCAACTTTTCCTAAACA-TTAGTTTTGTATGGACAGGC
i caeJap4.Scaffold1521 C 0 C 0

a score=-2509.000000
s ce10.chrX            3972627 29 + 17718866 -TACAGAAAAATAATTTTAAGATGTAGGGA
s caeSp111.Scaffold630 5985665 16 + 20921866 -TATTTAAAACAAAACC-------------
i caeSp111.Scaffold630 I 7 C 0
s caePb3.Scfld02_0     2286874 15 +  4147112 -taaccaaaaaaaaac--------------
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold1521   96836 16 +   152914 TTGAAAAGAATTAAGA--------------
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9103342  0 + 21540570 C
e caeRem4.Crem_Contig0 1015519 24 -  4500979 I

a score=182462.000000
s ce10.chrX            3972656 204 + 17718866 GTACCAGAGTGTGCGGTAGATTCCAGCCAAAACTTGGCTCCTTGAAGAGTTTCACCAGTAAGGTTGCCTCGTTTCATGTCACGTCTATGCTGAAATTGTAGGCAGCCATTCTCGCATTTTGCGTATTCCTCAGTGTTAACATAAAAGTATTCATCAATAGATCCATCCAGATTTTCTCGTGTCTTGGGGTATCCATACTGAAA-----A
s cb4.chrX             9103342 201 + 21540570 ---CCAGAATGAGCAGTGGATTCCAGCCAAAACTTTGCTCCTTGAAGAGTCTCTCCAGTCAGATTGCTTCTTTTCATATCACGTCTGTGTTGAAATTGAAGGCAACCATTTTCgcattttgaatattcttcaGTATCAACGAAGAAGTACTCGTCGATCGAACCGTCAAggttttctcttgtttttgggTAGCCATACTGAAC-----A
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1015543 209 -  4500979 GTACCTGAATGAGCGGTAGATTCCAACCAGAATTTGGCACCTTGAAGTGTTTCTCCAGTGAGATTACTTCTTTTCATATCTCGTCTATGTTGGAATTGTAGACAGCCGTTTTCACATTTGGTATATTCGTCGGTGTCCACGAAGAAGTATTCATCTATTGAGCCATCCAAATTTTGTCGTGTTTTTGGATATCCGTactaaacaaaaaa
i caeRem4.Crem_Contig0 I 24 C 0
s caeSp111.Scaffold630 5985681 203 + 20921866 -TACCTGAATGAGCAGTTGATTCTAGCCAGAATTTAGCACCTTGAAGGGTCTCTCCTGTCAGATTGCTTCGTTTCATGTCTCGTCTGTGTTGGAATTGAAGACAGCCGTTTTCACATTTGGTGTATTCTTCTGTGTCCACAAAGAAGTATTCGTCAATGGTCCCGTCTAGGTGTTGACGCATTTTTGGGTATCCATACtaatt-----a
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2286889 202 +  4147112 --acctgaATGAGCAGTGGATTCAAGCCAAAACTTTGCTCCTTGAAGGGTTTCTCCAGTCAGGTTACTTCTTTTCATATCTCGTCTGTGCTGAAATTGGAGGCAGccgttttcacattttttatattcttcaGTGTCAACAAAGAAGTATTCATCAATGGTTCCGTCCAGGTTTTGTCTGATTTTTGGATATCCGtactgaaa-----a
i caePb3.Scfld02_0     C 0 I 8
s caeJap4.Scaffold1521   96852 203 +   152914 -TACCTGAATGAGCGCTCGACTCTATCCAAAACTTCGCTCCTTGAAGGGTTTCCCCTGTGAGATTGCTTCTTTTCATATCGCGACGATGTTGGAATTGAAGACAACCGTTTTCACATTTAGTGTATTCTTCCGTGGACACAAAAAAGTATTCATCAATACTTCCATCCAATTGTTCACGTGTTTTTGGGTATCCATACTGAAA-----A
i caeJap4.Scaffold1521 C 0 I 44

a score=1299.000000
s ce10.chrX            3972860 3 + 17718866 GTT
s cb4.chrX             9103543 3 + 21540570 GTT
i cb4.chrX             C 0 I 34
s caeRem4.Crem_Contig0 1015752 3 -  4500979 gtt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5985884 3 + 20921866 att
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2287091 8 +  4147112 I
e caeJap4.Scaffold1521   97055 44 +   152914 I

a score=-1780.000000
s ce10.chrX            3972863 1 + 17718866 --A
s caeRem4.Crem_Contig0 1015755 1 -  4500979 -a-
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 5985887 1 + 20921866 t--
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2287091 8 +  4147112 I
e caeJap4.Scaffold1521   97055 44 +   152914 I
e cb4.chrX             9103546 34 + 21540570 I

a score=666.000000
s ce10.chrX            3972864 30 + 17718866 TATGTTTAAAAAACTGTGATCTGATTTTAT
s caeSp111.Scaffold630 5985888 29 + 20921866 tatatttaaGTAGATATT-TCTGGTTTCCT
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2287091  8 +  4147112 I
e caeJap4.Scaffold1521   97055 44 +   152914 I
e cb4.chrX             9103546 34 + 21540570 I
e caeRem4.Crem_Contig0 1015756  1 -  4500979 I

a score=0.000000
s ce10.chrX            3972894 535 + 17718866  
e caePb3.Scfld02_0     2287091   8 +  4147112 I
e caeJap4.Scaffold1521   97055  44 +   152914 I
e cb4.chrX             9103546  34 + 21540570 I
e caeSp111.Scaffold630 5985917   0 + 20921866 C
e caeRem4.Crem_Contig0 1015756   1 -  4500979 I

a score=613.000000
s ce10.chrX            3973429 12 + 17718866 TTCAGTTAGTTG
s caeRem4.Crem_Contig0 1015757 12 -  4500979 tttgGTTAATTA
i caeRem4.Crem_Contig0 I 1 C 0
e caePb3.Scfld02_0     2287091  8 +  4147112 I
e caeJap4.Scaffold1521   97055 44 +   152914 I
e cb4.chrX             9103546 34 + 21540570 I
e caeSp111.Scaffold630 5985917  0 + 20921866 C

a score=993.000000
s ce10.chrX            3973441 12 + 17718866 AAGTTCCAAATC
s caeRem4.Crem_Contig0 1015769  9 -  4500979 -AG--ACTAATC
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2287099 12 +  4147112 aagTTACAAATC
i caePb3.Scfld02_0     I 8 I 1
e caeJap4.Scaffold1521   97055 44 +   152914 I
e cb4.chrX             9103546 34 + 21540570 I
e caeSp111.Scaffold630 5985917  0 + 20921866 C

a score=-3915.000000
s ce10.chrX            3973453  5 + 17718866 ----TTACA----------
s caeRem4.Crem_Contig0 1015778  5 -  4500979 GTGCT--------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5985917  5 + 20921866 ----TCA----------CT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2287112 15 +  4147112 ----TCACTTTCGAACCCT
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold1521   97055 44 +   152914 I
e cb4.chrX             9103546 34 + 21540570 I

a score=454580.000000
s ce10.chrX            3973458 989 + 17718866  
s cb4.chrX             9103580 912 + 21540570  
i cb4.chrX             I 34 I 27
s caeRem4.Crem_Contig0 1015783 944 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 171
s caeSp111.Scaffold630 5985922 970 + 20921866  
i caeSp111.Scaffold630 C 0 I 148
s caePb3.Scfld02_0     2287127 940 +  4147112  
i caePb3.Scfld02_0     C 0 I 20
s caeJap4.Scaffold1521   97099 976 +   152914  
i caeJap4.Scaffold1521 I 44 C 0

a score=-451.000000
s ce10.chrX            3974447 11 + 17718866 TGAAGCCATAA
s caeJap4.Scaffold1521   98075  4 +   152914 agaa-------
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2288067 20 +  4147112 I
e cb4.chrX             9104492 27 + 21540570 I
e caeSp111.Scaffold630 5986892 148 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=0.000000
s ce10.chrX            3974458 64 + 17718866 TTCGAATTATCCTAGATTTTATTTATTTTATTCTAGTCACATGGTGACGGATTTGGGATTTGTT
e caePb3.Scfld02_0     2288067 20 +  4147112 I
e caeJap4.Scaffold1521   98079  0 +   152914 C
e cb4.chrX             9104492 27 + 21540570 I
e caeSp111.Scaffold630 5986892 148 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=-6138.000000
s ce10.chrX            3974522 42 + 17718866 GGAAGATTTAGATTTG--GATTTGAGATGCACTTTGGGAAAtta
s cb4.chrX             9104519 29 + 21540570 AAGAGCTATGAAAGGGAGGat--atgaaata-------------
i cb4.chrX             I 27 C 0
s caeSp111.Scaffold630 5987040 40 + 20921866 AGAAAGCTTAGATG----GATTGTCGTAGCACTTTGGAAAATTA
i caeSp111.Scaffold630 I 148 I 14
s caePb3.Scfld02_0     2288087 42 +  4147112 ggaaaaaatgagtgtgaagatgaaagaaacacgt--gaaaatga
i caePb3.Scfld02_0     I 20 C 0
s caeJap4.Scaffold1521   98079 36 +   152914 --aaaattttgattt---gatgagtgcaaaaaatgagatga---
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=-4601.000000
s ce10.chrX            3974564 38 + 17718866 aagatggagtacggcctgtgggaaacttaatcagaatc-
s cb4.chrX             9104548 20 + 21540570 aaaaaggag-ACAACACGTGA------------------
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2288129 10 +  4147112 ---agggag-atga-------------------------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   98115 18 +   152914 ---aaGGGG-TTAAGCCGAGC-----------------C
i caeJap4.Scaffold1521 C 0 I 22
e caeSp111.Scaffold630 5987080 14 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=144.000000
s ce10.chrX            3974602 70 + 17718866 atttacatggtaccaaaagaaaaatatatcataataaaaattttcaacaaaaattataatttttatTGAC-----
s cb4.chrX             9104568 51 + 21540570 --------------AAATGAAGGGGAAGCCTTAATTCGAATT----------ATCCTAGATTACATTCTTTTGCC
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2288139 38 +  4147112 ----------------------gggaaGCCATAATTCGAATT----------ATCCTAGATTTTATTTAC-----
i caePb3.Scfld02_0     C 0 I 72
e caeJap4.Scaffold1521   98133 22 +   152914 I
e caeSp111.Scaffold630 5987080 14 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=0.000000
s ce10.chrX            3974672 1 + 17718866 A
e caePb3.Scfld02_0     2288177 72 +  4147112 I
e caeJap4.Scaffold1521   98133 22 +   152914 I
e cb4.chrX             9104619 0 + 21540570 C
e caeSp111.Scaffold630 5987080 14 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=-1018.000000
s ce10.chrX            3974673 42 + 17718866 GTCAAAAAGATAAGTTATTATCACTTTTTGAGAAAACTATAG
s cb4.chrX             9104619 32 + 21540570 ----------TCCGGTGTTTCCGATATGGGAGAGAATCTTAA
i cb4.chrX             C 0 C 0
s caeJap4.Scaffold1521   98155 21 +   152914 GTGAAAGAGAT---------------------GAAGCCATAA
i caeJap4.Scaffold1521 I 22 C 0
e caePb3.Scfld02_0     2288177 72 +  4147112 I
e caeSp111.Scaffold630 5987080 14 + 20921866 I
e caeRem4.Crem_Contig0 1016727 171 -  4500979 I

a score=-8692.000000
s ce10.chrX            3974715 73 + 17718866 CACGGTATGTTCAAATTTCTACAGTGTAAAAGTGTTATTATTTGAAACATTAAAAATTTGAAACTGAATGttg--------------
s cb4.chrX             9104651 31 + 21540570 ----------------------AGCGGGAGA------------------TTTGGGATTTTCT--TGCacttta--------------
i cb4.chrX             C 0 I 2
s caeRem4.Crem_Contig0 1016898 48 -  4500979 aatgagatg-------------agCAGATGAA----------CAAAGCTTAAAAGATTTGTA--CGCActttg--------------
i caeRem4.Crem_Contig0 I 171 I 2
s caeJap4.Scaffold1521   98176 45 +   152914 ----------------------------------------TTCGAATTATCCGAGATTCTTT--GGTGTTTCGAGCTAAGCAACACT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2288177 72 +  4147112 I
e caeSp111.Scaffold630 5987080 14 + 20921866 I

a score=-21010.000000
s ce10.chrX            3974788 138 + 17718866 -----aaattgaaattgaaaaattgaatcgaaaattgaattgaaa----tttaaattgaataattgaaatAAT--------AGATTATAAAACTCCAAGGACTACTATAGGACTATAGGAGTAGTTTCTAATAATTTCCCCATTTACGATTTTCC
s cb4.chrX             9104684  54 + 21540570 -----aaattaaaat-----aactacg----------------------tggaaggcacgtaa--aaggtaaa--------atatcataaaa----------------------atag-------------------------------------
i cb4.chrX             I 2 C 0
s caeRem4.Crem_Contig0 1016948  83 -  4500979 -----aaattggaaa-----aattgga---aaaagtgagttgcAGATACTAGAGACCACACAACGAAGGTgaaaacagaggaaattggaaaa----------------------atgg-------------------------------------
i caeRem4.Crem_Contig0 I 2 C 0
s caePb3.Scfld02_0     2288249  41 +  4147112 -----AAATTAGTAT----------------------------------GGGAAAATGACCAA-GAAAGtaca--------ttttttct------------------------------------------------------------------
i caePb3.Scfld02_0     I 72 C 0
s caeJap4.Scaffold1521   98221  50 +   152914 TTGATAAAttggaaa-----ag---------------------------agaaaaagacagaa--aagaaaaa--------ggacaacagaa---------------------------------------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5987080  14 + 20921866 I

a score=147421.000000
s ce10.chrX            3974926 346 + 17718866 AAAATAAAAATATGCCAAAATGAGAGTAAAACAAAACAAAAAGGCACTTGAACATTATACGGTTCAATAATGCTTAGGATAGCG------GTGGGAGT----GAAATTTGAATA--AGAACAAACACACATAG------------------CTAA--GCTCAC---TATTTGTTAGTGGAAAAA-------------ACTTTT-TGAATAGGA--AGCGAGAGCCGATACAACCCCCAACACAAACACGAAA---TTGCAACATTGT--------AAAAAAACGATAAAGTTTAGAAAAG-------A------AGAGC------------------GAGTGCAAATCGTCAAAAACTCGACGA-CAACGGCTC---GGCT--------------CAGCTCGTTATTCGATGTTAACTAGGCCAATTTCACATAGATACTTTCATTCACTCTTTCAT
s cb4.chrX             9104738 374 + 21540570 ------aaaa-----------gaaact------GATC-------CACTTGA-------AGGGTTCAATAATGC-------AGTCCGGCATGGAAGagt----gaaatttgaata--agAACAAATAGACATAGAGAGCTACACAGTGGACTCTAAGCGCTGGATAATGTTTGTTA--GAAAGGAAGgatagaaactttttttt-tgaatagg---aCGGATGAGCGACACAA----CAACATAC--ACAAAA---TTGCAACATTGT--------aaaaaaaCGataaagtttagaaaaattgagggAGGCCGGAAAATTCGAgggaaaaagaggaggagTGCAAATCGTCAAAAACTTTTGGG-ACACGACTCACAGGCCCGTGCCG-----AAGAGCTCGTTATTCGCTGTTAACTAGGCCAATTTCAAA-GGATACTTTCT---TTTATTTCAC
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0 1017031 334 -  4500979 ------aaaaatatccataggaaagaa------aaac-------cacttgaaaattataagGTTCAATAATGC-------AGTC-----GGAGGGggt----gaaatttgaata--agaaCAAATACACAGAG-------CATAG------CTAA--GCTGGTGGCTGTTTGTTA--ggacaaa-------------cttttt-tgaataggGATGCGGGGATGCGACACAA----CAACACAC--ACGAAA---TTTCAACATTGT--------aaaaaaaCGATAAAGTTTAGAAATAGAGAAGGA------AAAGT----GaggggaggaggaggagtgCAAATCGTCAAAAACTC------GGACGACTC---------------------TAGCTCGTTATTCGTTGTTAACTAGGCCAATTCCGAA-agatactttttttctttctctcac
i caeRem4.Crem_Contig0 C 0 I 12
s caeSp111.Scaffold630 5987094 333 + 20921866 AAGGtaaaaatagggaaaacgaagaat--gagaagac-------cACTTGAAAATTATATGGTTTAATAATGG-------AGCC--------GGGggt----gaaatttgaata--agaaCAAACAGACATAG------GGAT------TTCTGA--GCTCGT---TGTTTGTTA--Gaacaaa-------------ctttttctgaataggC--AGCTAGATGCGACACA------AATACACA-ACGAAA---TTGCAACATTGT--------aaaaaaaCGATAAAGtttagaaaga--gaagaa------aatgt----gagGGA---GGGGGGAGTGCAAATCGTCAAAAACTCC-----CGACAACAC---------------------TAGCTCGTTATTCGTTGTTAACTAGGCCAATTCCGAA-AGatactttcttcatttctctcgc
i caeSp111.Scaffold630 I 14 I 42
s caePb3.Scfld02_0     2288290 332 +  4147112 ------agaatcgagaaaatgaaaagcgGGGGAAAAC-------CACTTGAAAATTATATGGTTCAATAATGC-------AGGC--------CGgggt----gaaatttgaata--agaaCAAATACACAGAG------CCATAG---CTCCTAA--GCTCGT---TGTTTGTTA--ggacaaa-------------cttttt-tgaataggg--AGCGAGATGCGACAC-------AACACACG-ACGAAA---TTGCAACATTGT--------aaaaaaaCGATAAAGTttagaaaga--gaagga------aaaat----gaggaa------ggGAGTGCAAATCGTCAAAAACTCTGAGGACGACGACAC---------------------TAGCTCGTTATTCGCTGTTAACTAGGCCAATTTCAAA-AGATactttctttatttctctttc
i caePb3.Scfld02_0     C 0 I 13
s caeJap4.Scaffold1521   98271 339 +   152914 ------aaaagTATGTATAAGATGGGT--TCGAGAAG-------CACTTGAACATTATACGGTTCAAT-ATAC-------TGAC--------GGGAGCGGTGGAAATTTGAATAACAGAGAGAACAAACATAG------------------CAAA--GCCTCA----GTTTGTTG--Gttgcaa-------------catttt-tgaatAGAG-----CAGATGGAAAA--------AGTGGGG--ATAAAATTGTTGCAACATtgtaaaacgaaaaaaaaacaataaagttTAGTAGAG---AAAAC------AAAGC----GAGAGA-------TGAGTGCAAATCGTCAAAAACTCGA----CGAAGACTC-------TTTGCCGCTTTAACCAGCTCGTTATTTTCTGTTAACTAGGCCAATTCCAAC-AGATACTTTCATTCTCTCACTTCT
i caeJap4.Scaffold1521 C 0 C 0

a score=-1978.000000
s ce10.chrX            3975272 4 + 17718866 CCAA--
s cb4.chrX             9105113 2 + 21540570 --CA--
i cb4.chrX             I 1 C 0
s caeRem4.Crem_Contig0 1017377 4 -  4500979 ttca--
i caeRem4.Crem_Contig0 I 12 C 0
s caePb3.Scfld02_0     2288635 4 +  4147112 tttg--
i caePb3.Scfld02_0     I 13 C 0
s caeJap4.Scaffold1521   98610 4 +   152914 --CAAA
i caeJap4.Scaffold1521 C 0 I 455
e caeSp111.Scaffold630 5987427 42 + 20921866 I

a score=-2396.000000
s ce10.chrX            3975276 17 + 17718866 CGTACATTTTTATACAT------------------
s cb4.chrX             9105115 17 + 21540570 AACACACTGAGATACAT------------------
i cb4.chrX             C 0 I 708
s caeRem4.Crem_Contig0 1017381 17 -  4500979 aGCAGATTTTCAAATGT------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2288639 35 +  4147112 agaGGAGTTCCGTGAATGAAAGTAATGTTATATTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   98614 455 +   152914 I
e caeSp111.Scaffold630 5987427 42 + 20921866 I

a score=-1246.000000
s ce10.chrX            3975293  5 + 17718866 ---AAAAA--------
s caeRem4.Crem_Contig0 1017398 16 -  4500979 GAGTAGAGTAGTCACA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2288674  5 +  4147112 ---TGGAA--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   98614 455 +   152914 I
e cb4.chrX             9105132 708 + 21540570 I
e caeSp111.Scaffold630 5987427 42 + 20921866 I

a score=-8504.000000
s ce10.chrX            3975298 355 + 17718866 TGAATTTGTAGTGTTGTTC--------------TGACT---TTTTTGCTCTAA--------------TTATTATATTT-----------TTCAAAGGAACGGGAAAAGTGTGGGT---TGGAAGGAA--AGATAAGGC--GACTG---AGTGTCGTCACTCCACCC----AGCAAGTGGTCACCACCG--AGTGTACACCCTGTGG-GGGCGGGGCGTGTTCCTAAAAGCAAGGTAATA------GAGAAATGGGAGACCGTGTGCATAGTGC---CAAAAAATAATTTAGCTAATTAAATATTTCTCAAACAATATGAAACAAAATATAGAATTGTGCTTTACACA------AAAATTTGATCGAAACCCATATA---------------------------------CTAGTGACCTTCCTGCATTGCTCTTTCTTATACCTTTCTTAGACCAACAGGTA
s caeRem4.Crem_Contig0 1017414 367 -  4500979 GATATTTGGAGTGCGGTTTCAAGAAA-------TAACGTCTTCCAGTCTCTCACTTTTTAGATTTTATATTTGTATC-----ATGTGTgttcaaaaaca-acagaaagGGTGGTTGCTGGGAGGAAA--AGATAAGGA--GTGCGTAGGGCGTCTTCG-TTCACCACCCCCGCTAGTGGTGTCCGGTAGAAGTGTACACCAAAAAGTAGGCGGGGTC---AACTGCCAG-------------TAGGAGAAATGAAAGGTAG---------------CAACA--------ATGGTATGAGAAACATaacagaa---atgaatgaaacttcaaaaatgtgactttCTAAACCTACACAAACTATCGAGAAAAGGGATT------------------TATTCTGCCGAGTAAGCCGTAACCCACC-------CTCTACCCTATA--------GGACCAACCCA--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5987469 333 + 20921866 TGAATTTGTAgttggtttttcagaaatttataTTAATA---TTCGCTCTCGCA------------TCTATTTGTATCTGTCTGAATGTGTTCGAAAACAGACCAAACGTGTGGTG---GGGAAGCAAATAGATAAGAC---AGAGGAAGGTGTCTCCA-TTCACCA----AGCAAATGGTGTCTT-----AGTGTACaccaaaaaatgggcggagcctccaACCGCAAg-----------ataatgaagaagaaaatgtgg-----GGAGGTCTTGTAACACTGTATTGAGGGGATATGCAACATTTCCAA---------TCTACATTTCATGAAGTATTATGT------------AACTGTACAGAAAGCATATC-------------------------------------TGAC--------------CTTCACCACA--------GAAAGGACCCA--
i caeSp111.Scaffold630 I 42 C 0
s caePb3.Scfld02_0     2288679 371 +  4147112 TGAGTgtgtcatttg------aaaaa-------taata---tccaTTCCTCCA--------------TATTTGTATCTATGAGTGAGTGTTCAAAAACAGGCCAGAAATATgtta--tgagaagaaaaaagataagaaaagagTGGAGAGTGTCTTCG-TTCACCA----AGCAAATGGTGTCCT-----AGTGTACACCAAATAGTAGGCGGAGCCAGTGACCGCAAGCAAGGTGACAAACTGTGAGAAAGGGAAGAGGGTTACCAGAGAATTTGTAAAA--------AGTGAAAGTGGAATTTGtccaa-----------gaaattgaaaaatgtttttttttca------gaaaatcgaataaaaaaagtttttgaggatTGGAAATTGTTGCTTCCACCTACGCAACAGTGAC--------------CTTCTCCTTT--------GGACCAATCCA--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   98614 455 +   152914 I
e cb4.chrX             9105132 708 + 21540570 I

a score=2820.000000
s ce10.chrX            3975653 3 + 17718866 ACA
s cb4.chrX             9105840 3 + 21540570 ACA
i cb4.chrX             I 708 C 0
s caeRem4.Crem_Contig0 1017781 3 -  4500979 ACA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5987802 3 + 20921866 ACA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2289050 3 +  4147112 ACA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   98614 455 +   152914 I

a score=64654.000000
s ce10.chrX            3975656 272 + 17718866 GGTTAATCCCA-TTTTATAACCGGTCATTTAGAAT-----ATCAAAAAGAAACCCATAAATCTCAA-GCGGT--ACTGTCGCAAAGAGG--------------------AGACCCATTGTGTAGAG----AGATAGC-AAAAGAAATTCACACAATCTGGTCAATGGCTCACAAAAAAA----------ACAGAA-------ATATAAAATAGAG-TTTGCGCAATATT-------TGTGAAAAGAGTAAAATAGAGTAGTAACACAT-GGA-AGGGTAGAGGGGAAAAAAACGCCGGAAATCTGCTCATTTCATATTCAGGGAATAGCATGA
s cb4.chrX             9105843 265 + 21540570 GGTTAATCCCA-TTTTATAACCGGTCATTTGGGTGAGTAGAGTAGAATAGAAATCATAAATTCTCGAGCGGT--ACTGTTTCCAAAAGGCTCGTCTCCAAAAGGCTTTTTCCAAAAGGATATTGTC--------TGACAAAGGGA-----------------AATTTCTCTCGCGATGA-----------CAAAA-------AAGGATA-TCGAGTTTTATGCAACATG-------CG-----TGG--AAAATAAT---GGATTATATGgga-atgcgaaa--aaaaaacgaggcCGGAAATCTGCTCATTTCATATTCAgga-attgcatga
i cb4.chrX             C 0 I 87
s caeRem4.Crem_Contig0 1017784 239 -  4500979 GGTTAATCCCATTTTTATAACCGGTCATTTTGGAG----GAGTAGAatagaaataataaattcTCG-GCGGT--ACGGTTAAAAAGAGG------------GAGATTCTACCTCTATTGTGTTGGT--------AGG-AAAGATT-----------------CATTGCTCTC--------------------AAA-------AAGGGCA-TAGAG-TTTATGCAACATT-------CG-----AGAGTGAAATAGA---GTAACATAT-GGA-GGGccaca--caaaaaaaatgcCGGAAATCTCCTCATTTTGTATTCACGG-ATTGCATGA
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 5987805 247 + 20921866 GGTTAATCCCC-TTTTATAACCAGTAATTCAAAAG-----AGTAGAATAGAAGCCATAAATTTTGA-GCGGT--ACGGTTAAAAAGGGG------------TCGAGACTGCCACCATTGTGTTGag----atggagg-aggaaga-----------------gataTCCATAGCTCTAC-------------AAA-------ATATAAA-TAGAG-TTTGCGCAACAtt-------cg-----agaataaaaaagag-agtaaCATAT-GGAGGGGACAC------AAAAAACGCCGGAAATCTCCTCATTTCGTATTCAAGG-ATTGCATGA
i caeSp111.Scaffold630 C 0 I 2
s caePb3.Scfld02_0     2289053 243 +  4147112 GGTTAATCCCA-ATTTATAACCGGTCATTtaaaggagagaagaagaatagaaacCATAAATTTTGA-GCGGT--ACGGTTGAAAAGAG---------------------GCCACTATTGTGttgagtagaaaaaaga-aggaagag----------------gataTCTGAAGCTCaac-----------taaaa-------atataaa---------tgCGCAACATT-------CG-----AGAGTAAAATAGAG-GGTAACATAT-GGA-GGGACAC-----aaaaaaaTGCCGGAAATCTGCTCATTTCGTATTCAGGG-ATTGCATGA
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold1521   99069 248 +   152914 GGTTAATCTCA-TTTTATTACCCGGTATTCAAAAA------------AGGGGCTCGTAAAATT--G-GTGGTCGGCAGTTGCAAAATGA------------GTG-----GCATTCTTTGTTTTGGA------------AAATACC-----------------TGTTTTTACCGTCAAAATCTTGCCGACACAGAATAAATTTATTGAGA-TGGAG-GTTATGCAACACTTCTATAACG-----GGTATGAAATgaga---------at-gga-aaaaaacg----acaaaaacgCCGGAAATCTGCTCATTTTATATTCTGCG-ATTGCATGA
i caeJap4.Scaffold1521 I 455 C 0

a score=3262.000000
s ce10.chrX            3975928 40 + 17718866 -TATTCCGGATTTGA-AGATGATT---GCAAGGAAACAATAATTT
s caeRem4.Crem_Contig0 1018025 38 -  4500979 -CGTTTGGAATTTTA-TGTTGATTGTAGCAGAAGAACAAT-----
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold630 5988054 39 + 20921866 -TATTTGGAATGCTA-TGTTGATT----ACTGCAAACAATAATTG
i caeSp111.Scaffold630 I 2 I 3
s caePb3.Scfld02_0     2289298 42 +  4147112 -CATTTGGTATTCTA-TGCTGatt-tacaacaaaaacaataattt
i caePb3.Scfld02_0     I 2 I 216
s caeJap4.Scaffold1521   99317 39 +   152914 TTACTAAAAGCGAGAGGGTTGGTT------GCAAAACAATAAGTG
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9106108 87 + 21540570 I

a score=162.000000
s ce10.chrX            3975968 12 + 17718866 GGGCCAAAAATT
s caeRem4.Crem_Contig0 1018063  4 -  4500979 --------AAGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5988096 12 + 20921866 GAGGAAAGAATT
i caeSp111.Scaffold630 I 3 I 63
s caeJap4.Scaffold1521   99356  9 +   152914 ---GAGCAAATT
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2289340 216 +  4147112 I
e cb4.chrX             9106108 87 + 21540570 I

a score=1137.000000
s ce10.chrX            3975980 22 + 17718866 ------AAATATAGTACTTATTTCTTTC
s caeRem4.Crem_Contig0 1018067 22 -  4500979 ------GGTAGTATTATTTGTTTCTTTC
i caeRem4.Crem_Contig0 C 0 I 125
s caeJap4.Scaffold1521   99365 24 +   152914 TTTTCTAAccat----cttttttctttc
i caeJap4.Scaffold1521 C 0 C 0
e caePb3.Scfld02_0     2289340 216 +  4147112 I
e cb4.chrX             9106108 87 + 21540570 I
e caeSp111.Scaffold630 5988108 63 + 20921866 I

a score=182.000000
s ce10.chrX            3976002 2 + 17718866 TT
s caeJap4.Scaffold1521   99389 2 +   152914 tt
i caeJap4.Scaffold1521 C 0 I 41
e caePb3.Scfld02_0     2289340 216 +  4147112 I
e cb4.chrX             9106108 87 + 21540570 I
e caeSp111.Scaffold630 5988108 63 + 20921866 I
e caeRem4.Crem_Contig0 1018089 125 -  4500979 I

a score=0.000000
s ce10.chrX            3976004 664 + 17718866  
e caePb3.Scfld02_0     2289340 216 +  4147112 I
e caeJap4.Scaffold1521   99391  41 +   152914 I
e cb4.chrX             9106108  87 + 21540570 I
e caeSp111.Scaffold630 5988108  63 + 20921866 I
e caeRem4.Crem_Contig0 1018089 125 -  4500979 I

a score=120.000000
s ce10.chrX            3976668 4 + 17718866 TACT
s caeRem4.Crem_Contig0 1018214 4 -  4500979 TGTT
i caeRem4.Crem_Contig0 I 125 C 0
e caePb3.Scfld02_0     2289340 216 +  4147112 I
e caeJap4.Scaffold1521   99391 41 +   152914 I
e cb4.chrX             9106108 87 + 21540570 I
e caeSp111.Scaffold630 5988108 63 + 20921866 I

a score=-791.000000
s ce10.chrX            3976672 2 + 17718866 TT-
s caeRem4.Crem_Contig0 1018218 2 -  4500979 -CT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2289556 2 +  4147112 TC-
i caePb3.Scfld02_0     I 216 C 0
e caeJap4.Scaffold1521   99391 41 +   152914 I
e cb4.chrX             9106108 87 + 21540570 I
e caeSp111.Scaffold630 5988108 63 + 20921866 I

a score=513.000000
s ce10.chrX            3976674 10 + 17718866 -ACACCAATGA
s caeRem4.Crem_Contig0 1018220 10 -  4500979 AACCCACCTG-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5988171 10 + 20921866 ACCCCAACTG-
i caeSp111.Scaffold630 I 63 C 0
s caePb3.Scfld02_0     2289558  9 +  4147112 -ACACAACTG-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   99391 41 +   152914 I
e cb4.chrX             9106108 87 + 21540570 I

a score=1188.000000
s ce10.chrX            3976684 5 + 17718866 TAGAG
s cb4.chrX             9106195 5 + 21540570 TAGAA
i cb4.chrX             I 87 C 0
s caeRem4.Crem_Contig0 1018230 5 -  4500979 TGAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5988181 5 + 20921866 CGAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2289567 5 +  4147112 CGAGA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521   99391 41 +   152914 I

a score=160272.000000
s ce10.chrX            3976689 352 + 17718866 AAGGGTCTGGTTACCAGTTTCCTGGAGGCACAAAA------GCGAGGAAAAAGCACCTGTTACTAAC--------AGACATCA-TTGGCGGTATTATCTACGG------GAAAGACT------TTGAGCCGAGTATACCGATTAATCA----------GGGATGTACAC--TATCCCGCGC--ATATCCCCCG-CTTCTTGTTCTACAAGACA--CAACAACATTCTCATTACAATATTACA-----AG--TAGTTCTA--GCTGCTGACAGCCGCATTT-------GAAACGAAACC---ACGGGACCCTCC-CCACTCATCAATTAACGAATACCTGCGGCTGTCATAAACAACATATGTA----GTCAGGATAGACACACG--TTGATGAATTATTCTGTA-GGCG--ATACGTCTCAATTT
s cb4.chrX             9106200 326 + 21540570 AAGTATTCGGTTACCGCTTTCCCCTCAAAAAAT----------------AGAGCACCTGTTGCTTCCTCT--------CATCA-TTGGCGGTATTGGCTCCAGAA----GAGCCACT---------------------CGATTAATCTA---------GGAAAGTACACTATATCCCGCGCAGACCCCGAATG-TTTCTTGTTTTACAAGACAACCAACAACAATCCCATTACAATGATA--------GCCTAGTTG--------CTGACAGCCGCTTTT-------GAATTGGA------ACGGACCCATCCACCAGTCATCAATTAACGAATACCTGCGGCTGTCACAAACAACATATGTATCTA-----GATGAACAC-CA--CTGATGAATTATTCCAAACGGCG--ATCCGTCTCAATTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1018235 388 -  4500979 AAGTGTTCGGTTACCAGTTTCCTAGCGGCACAGGA------GTGTAGGAAAGGCACCTGTTGTCGACTGCTCGTCAGACATCA-TTGGCGGTGTTATCttcggaaaaagaaacgaCTTCAGGATAGAGCT--GTATACCGATTAATCAACAGGATTGGGGGATGTACAC--TATCCCGCGC--ACCACTGATG-TTTCTTGTTCTACAAGACA--CAACAACAACCTCATTACAATGATA--------G--TAGTTGC----TTACTGACAGccgcttttgaaaaaagaattagaaCGGAGACGGACTCCTCTCCCAGTCATCAATTAACGAATACCTGCGGCTGTCATAAACAACATATGTATGTATTCGGGATAGACA--GA--CTAATGAATTATTTCTAA-GGCG--ATCCGTCTCAATTT
i caeRem4.Crem_Contig0 C 0 I 59
s caeSp111.Scaffold630 5988186 361 + 20921866 AAGTGTTCGGTTACCAGGTTCCTGTCGGCACGAGA------GTGCGG-AAAAGCACCTGTTGTCTACAGCTCGTCAGCGATCA-TTGGCGGTATTGTCTCCGGAGAAAGAAACGACTCCCG--AAGAGCT--GATTGTCGATTAATCAACTGGTAAA-GGGGTGGATG---TATTCCGCGC--AC---------TTTCTTGTTTTACAAGACA--CAACAA------CATTACAATATTC-------AG--GAGCTTC----TAGCTGACAGCCGCTTTTGAAA---GATTTGGA------ACGAAGACAGGC-CCAGTCATCAATTAACGAATACCTGCGGCTGTCATAAACAACATATGTACACGATAGGAATAGAGACACA--CTAATGAATTATTTCTAT-GGTG--ATCCGTCTCAATT-
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2289572 375 +  4147112 AAGTGTTCGGTTACTAGTTTCCTGGCGGTACAAGA------GCGCGGAAAAAGCACCTGTTGTCTACTGCTCATCAGAAATCA-TTGGCGGTATTATCTTCGGA-AAAGAAACGACTTCAG-AAAGGGCT--GTACTCCGATTAATCAACTGGTA-----GATGTACAC--TATCCCGCGC--ATCCCGGATTGTTTCTTGTTCTACAAGACA--CAACAACATCCTCATTACAATATTT--------G--AAGATCC----TAGTTGACAGCCGCTTTTGAAA---GAATTGGA------ACGGACCTCTCT-CCCCTCATCAATTAACGAATACCTGCGGCTGTCATAAACAACATATGTATATCTTCAGAATACACATACACCCTAATGAATTATTTCCAA-GATG--ATCCGTCTCAATT-
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521   99432 355 +   152914 AAGTGTTCGATCACTAGTATCGTTGTGCTGCGCACACTCTTGCGAAGAAAAAGCACCTGTTACCAAG-------CAGACATCATTTGGCGGTATTATCGCCCGAAAAGAGGCCAA-----------------GTCTACCAATTAATCAGCGGAA----AGGATGTA-----TAACCCGCGC--AGCTCAG-TG-TTCTTTTCACTACAAGA----CAACAAAACTCTCATTACAATAATCTACAATGAG--AAGCTAGATGGCTGTCAGCAACCGCTTGT-------GAATCGAGAG----ACAAGACACAGA-CC--TCATCAATTAACGAATACCTGGATATGTCATAAACAACATATGTA---------CACAGGAACAC---TCGATGAATTATTCCAAA-TGTGCCATCCGTCTTAATTT
i caeJap4.Scaffold1521 I 41 C 0

a score=-23463.000000
s ce10.chrX            3977041  61 + 17718866 ----------ATTAGAACATTTGATTTTGGTAAGATTTTGG-TAAGAAACGTATC-----------------TATTCCA---TCAACCGCTC--------
s cb4.chrX             9106526  57 + 21540570 ------------TGGTTTATCC--TGGTAGTAGTATATCTCGCAAACAAGATGTCACA-------------CTACtcaaatctc----------------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 5988547  48 + 20921866 --------------------------TTAGTGAC-TATCCC-CAGATGAAAAGTCA----------------AAATCAGATATTCTCCTTCc--------
i caeSp111.Scaffold630 C 0 I 2
s caePb3.Scfld02_0     2289947  38 +  4147112 --------------------------TTAGGA-----------GGACAACAAGTC-----------------AACTCGAATCTCATTCTCAC--------
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold1521   99787 100 +   152914 TTGTTTGGATGGTGGGTGGttcaaaaatgaagagaaatgggGAAGAAAAAGAGACATCTCATGTATTTCATCTCATCTCATCTCAACCCAACAATCTCAA
i caeJap4.Scaffold1521 C 0 C 0
e caeRem4.Crem_Contig0 1018623  59 -  4500979 I

a score=147185.000000
s ce10.chrX            3977102 561 + 17718866  
s cb4.chrX             9106583 511 + 21540570  
i cb4.chrX             C 0 I 87
s caeRem4.Crem_Contig0 1018682 560 -  4500979  
i caeRem4.Crem_Contig0 I 59 C 0
s caeSp111.Scaffold630 5988597 579 + 20921866  
i caeSp111.Scaffold630 I 2 C 0
s caePb3.Scfld02_0     2289989 612 +  4147112  
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold1521   99887 668 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=1713.000000
s ce10.chrX            3977663 11 + 17718866 ---TTACGTGGTTT
s caeRem4.Crem_Contig0 1019242  6 -  4500979 --------TAGTTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989176  8 + 20921866 ---TT---TGGTTT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2290601  9 +  4147112 ---TTA--TGGTTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  100555 11 +   152914 TAGTC---TGGTTT
i caeJap4.Scaffold1521 C 0 I 155
e cb4.chrX             9107094 87 + 21540570 I

a score=7478.000000
s ce10.chrX            3977674 46 + 17718866 ACGACCGGTAAG--CGGATGACCACAACCGTTTTTACGAGG--------GGATGAA
s caeRem4.Crem_Contig0 1019248 55 -  4500979 ACGATCTATATAAGAGGATGACCAAAACG-GTTTTATGGTTCCATGAGCGGATCAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989184 46 + 20921866 ATGGCCAATAAA--AAGATGACCACGATGTGGTTTATGGTA--------GGATCAG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2290610 48 +  4147112 ATGAACCATAAAATAGGTTGACCACAACGGTTTTTATGGTG--------GGATCAA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  100566 155 +   152914 I
e cb4.chrX             9107094 87 + 21540570 I

a score=-2892.000000
s ce10.chrX            3977720 6 + 17718866 TGGGGT--
s cb4.chrX             9107181 6 + 21540570 TAGAAT--
i cb4.chrX             I 87 C 0
s caeRem4.Crem_Contig0 1019303 6 -  4500979 TAGTTT--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989230 6 + 20921866 --GAAGgt
i caeSp111.Scaffold630 C 0 I 122
s caePb3.Scfld02_0     2290658 5 +  4147112 --GAGTT-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  100566 155 +   152914 I

a score=-5591.000000
s ce10.chrX            3977726 43 + 17718866 ATGGTATGTACTGAAATCCAATGTAAA-----TGGGGTACGACGATAT--
s cb4.chrX             9107187 38 + 21540570 TTGGGACATACGGTaa-------tgaa-----ctgaaaatgatcaattat
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0 1019309 38 -  4500979 CAAATAGGTACTGTAA-------TGAAAAGGTTGGAAAACGA-----CAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2290663 21 +  4147112 ----TTAGTACTGTA----------AA-----TTTGGTAC----------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  100566 155 +   152914 I
e caeSp111.Scaffold630 5989236 122 + 20921866 I

a score=-33241.000000
s ce10.chrX            3977769 653 + 17718866  
s cb4.chrX             9107226 583 + 21540570  
i cb4.chrX             I 1 C 0
s caePb3.Scfld02_0     2290684 354 +  4147112  
i caePb3.Scfld02_0     C 0 I 12
e caeJap4.Scaffold1521  100566 155 +   152914 I
e caeSp111.Scaffold630 5989236 122 + 20921866 I
e caeRem4.Crem_Contig0 1019347   0 -  4500979 C

a score=771.000000
s ce10.chrX            3978422 16 + 17718866 TAAACTGAATAATGAC
s cb4.chrX             9107809 15 + 21540570 -AAACTCAGTGATGAT
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0     2291038 12 +  4147112 I
e caeJap4.Scaffold1521  100566 155 +   152914 I
e caeSp111.Scaffold630 5989236 122 + 20921866 I
e caeRem4.Crem_Contig0 1019347  0 -  4500979 C

a score=-1799.000000
s ce10.chrX            3978438 34 + 17718866 AAAAATATGTTTGCAATGTTTATATAAGGC--------TAGA
s cb4.chrX             9107824 23 + 21540570 ACATCACACCCTACGGTGT-------------------CACC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1019347 42 -  4500979 AAAACAATGTTTGCCATGTAAAAGATAGGTTCTCATCACACC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2291038 12 +  4147112 I
e caeJap4.Scaffold1521  100566 155 +   152914 I
e caeSp111.Scaffold630 5989236 122 + 20921866 I

a score=12767.000000
s ce10.chrX            3978472 40 + 17718866 TATAGGTGTCACTTAACCTTACATGATATACTCAGTGGGA
s cb4.chrX             9107847 25 + 21540570 TCTAGGTGTCACTTTACCT---------------ATGGGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1019389 40 -  4500979 AACAGGCACCACTTCACCTCACATGAACCTCCCGGTGAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989358 31 + 20921866 TATAGGTATCACTTTACCTTCCATG---------GTGGGA
i caeSp111.Scaffold630 I 122 C 0
s caePb3.Scfld02_0     2291050 31 +  4147112 TCTAGGTGTCACCTTACCTTCTATG---------GTGGGA
i caePb3.Scfld02_0     I 12 C 0
e caeJap4.Scaffold1521  100566 155 +   152914 I

a score=14223.000000
s ce10.chrX            3978512 44 + 17718866 ATCATTACAGTTCTAT--------TTAGTTAGCACCTCAGACACAACAGAAA---
s cb4.chrX             9107872 42 + 21540570 ATCATAACACTCATAT--------TTATTCACCAcctcc--aaaaacaaaaa---
i cb4.chrX             C 0 I 24
s caeRem4.Crem_Contig0 1019429 50 -  4500979 ATCATCACTATCTTATTTGGTTAGTTGGTTAGCACCTTG--GAGCACAacaa---
i caeRem4.Crem_Contig0 C 0 I 17
s caeSp111.Scaffold630 5989389 42 + 20921866 ATTCTCACCTCTATAT--------TTGGTCAGCACctct--caaaacaaaaa---
i caeSp111.Scaffold630 C 0 I 41
s caePb3.Scfld02_0     2291081 38 +  4147112 AT-----ATACTATAT--------TTGGTTAGCacctcc-aaaaaacaaaaa---
i caePb3.Scfld02_0     C 0 I 18
s caeJap4.Scaffold1521  100721 45 +   152914 ATCGTCACTTCCGTGT--------TTGGTTAGCACCTTG--AACAAAGAGAAAAA
i caeJap4.Scaffold1521 I 155 C 0

a score=-6609.000000
s ce10.chrX            3978556 28 + 17718866 TAACACACATAT-----------ATAATAACCCAGGCGA
s cb4.chrX             9107938 38 + 21540570 AAACAGCAAGGTGTCAACGAGGGAGAAAAAACTATGCG-
i cb4.chrX             I 24 C 0
s caeRem4.Crem_Contig0 1019496 30 -  4500979 CAACACCAGTGT--------GAGAGAATAAAGgatgtg-
i caeRem4.Crem_Contig0 I 17 C 0
s caePb3.Scfld02_0     2291137 20 +  4147112 TAACACCCGAGC--------GTTAGGAA-----------
i caePb3.Scfld02_0     I 18 I 3
s caeJap4.Scaffold1521  100766 30 +   152914 CAATACGTATGA--------TATCTAACACCTTGGAAG-
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5989431 41 + 20921866 I

a score=159227.000000
s ce10.chrX            3978584 411 + 17718866  
s cb4.chrX             9107976 414 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1019526 432 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989472 417 + 20921866  
i caeSp111.Scaffold630 I 41 C 0
s caePb3.Scfld02_0     2291160 424 +  4147112  
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  100796 437 +   152914  
i caeJap4.Scaffold1521 C 0 I 37

a score=-495.000000
s ce10.chrX            3978995 27 + 17718866 AACATTGACAACTCGCAGGGG---GCTCCA
s cb4.chrX             9108390 10 + 21540570 AACTT-----------GGGAG---------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1019958 19 -  4500979 AACTT-----------GGAAGGGAGCTCAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989889 16 + 20921866 AAGTT-----------AGAGA---GCTCAG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2291584 16 +  4147112 AACTT-----------GGCGG---GCTCAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  101233 37 +   152914 I

a score=38595.000000
s ce10.chrX            3979022 40 + 17718866 CGATTCTCTCACAAACCACAGAGGA----GAGCCATAAATCAAA
s cb4.chrX             9108400 44 + 21540570 CCGGGCTCTCACAGACCACAGAGAATGAGGAGCAATAAATCAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1019977 40 -  4500979 TGAGTCTCTCACAAACCACAGAGAA----GAGCCATAAATCAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989905 40 + 20921866 AGAGACTCCCACAAACCACAGAGAG----GAGCCATAAATCAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2291600 40 +  4147112 CGAGTCTCTCACAAACCACAGAGTA----GAGCCATAAATCAAA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  101270 40 +   152914 CGAGGCTCTCATAAACCACGGAGGC----TGGCAATAAATCAAA
i caeJap4.Scaffold1521 I 37 C 0

a score=14322.000000
s ce10.chrX            3979062 111 + 17718866 GGTAGTTAG------AATGTCAATG-AAAAACCAGATTTTTTGCTGGGCGGAAAAGTGGATC------------TAGGGGGTAGCTGTTGC--------AGTCTATTCATCTTTTTAATTCAAAAAGTAGATATTTGT
s cb4.chrX             9108444 107 + 21540570 AGTAGTTTGAAGGGAAATGTCAATGAAAAAACCAGATTGCATT--------GAAAACGGATTGCGAGTGTTGTATT--------GTGTTGC--------AGCTTCT-------TTAGATTCAAAATGAGAAGATATGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1020017 107 -  4500979 GGTAGTTAG------AATGTCAAtgaaaaaaccagattttttg-----aaagaaagcgGATTG---GAGATCCATTCGGTGGGAGTGTTGC--------AGTCCCT-------TT--ATTCAAAATGTGGAGATATGT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2291640 116 +  4147112 GGTAGTTGG------AATGTCAATGAAAAAACCAGATTTGTGA-----GAGGAAAACGGATTGTTAGGG-----TCTGGGGTGTCTGTTGCTATTGAAAAGTCtct------atttcattcaaaacgtGGATATATGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  101310  85 +   152914 GGTAGTTGG------AATGTCAATGAGGAAAC--------------------AAACCAGATT------------CTGGAGGCTAAGATTGC--------AACTGGG-------TgactttcaaaaaaccaaccaCAAT
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5989945   0 + 20921866 C

a score=122431.000000
s ce10.chrX            3979173 484 + 17718866  
s cb4.chrX             9108551 470 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1020124 466 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5989945 439 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2291756 454 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  101395 467 +   152914  
i caeJap4.Scaffold1521 C 0 I 85

a score=4863.000000
s ce10.chrX            3979657 26 + 17718866 C-----------------------TGCATAATATTGTTTAATGGATTAG
s cb4.chrX             9109021 47 + 21540570 CTGGTGCTACAAGTGGATTAGAGATACAATAAAGGTTTTAAGAGATT--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1020590 26 -  4500979 C-----------------------TACATAACAACTTTTAACGGATTAG
i caeRem4.Crem_Contig0 C 0 I 105
s caeSp111.Scaffold630 5990384 26 + 20921866 C-----------------------TGCCTAATACCCTTCAGCGGATTAG
i caeSp111.Scaffold630 C 0 I 116
s caePb3.Scfld02_0     2292210 26 +  4147112 C-----------------------TACATAATATCCATTAATGGATTAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  101862 85 +   152914 I

a score=-32509.000000
s ce10.chrX            3979683 736 + 17718866  
s cb4.chrX             9109068 590 + 21540570  
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2292236 475 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  101862  85 +   152914 I
e caeSp111.Scaffold630 5990410 116 + 20921866 I
e caeRem4.Crem_Contig0 1020616 105 -  4500979 I

a score=-4472.000000
s ce10.chrX            3980419 30 + 17718866 TGAAAAATTAGCATTGACCCTAATTTTCAC
s cb4.chrX             9109658 17 + 21540570 -CAAAAAGTGAACATAAT------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1020721 30 -  4500979 TAGAAAATTAGGTAGAATTTTGATTCTTAA
i caeRem4.Crem_Contig0 I 105 C 0
s caePb3.Scfld02_0     2292711 12 +  4147112 -----ACCTTAATGCAC-------------
i caePb3.Scfld02_0     C 0 I 1
e caeJap4.Scaffold1521  101862 85 +   152914 I
e caeSp111.Scaffold630 5990410 116 + 20921866 I

a score=-180.000000
s ce10.chrX            3980449 9 + 17718866 AGGTTTTAT
s caeRem4.Crem_Contig0 1020751 9 -  4500979 ATGTTCCAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5990526 9 + 20921866 AGGCGTTAT
i caeSp111.Scaffold630 I 116 C 0
s caePb3.Scfld02_0     2292724 9 +  4147112 GGTCCTTCA
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold1521  101862 85 +   152914 I
e cb4.chrX             9109675 0 + 21540570 C

a score=388638.000000
s ce10.chrX            3980458 1308 + 17718866  
s cb4.chrX             9109675 1384 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1020760 1377 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5990535 1290 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2292733 1424 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  101947 1513 +   152914  
i caeJap4.Scaffold1521 I 85 I 1123

a score=60784.000000
s ce10.chrX            3981766  96 + 17718866 GATGAGACACCGAC-----CGAGT---AGACAAGTGACCGATTGACGGTATTGCGTGATTATGATATTTATTCAATCGGATTCATGTTCCACATCCACTTAATC
s cb4.chrX             9111059 101 + 21540570 GATGAGACACCGACCAAAGTGGTTGGAGGAGGAGTGACCGATTGACGGTATTGCGTGATTATGATATTTATTCAATCCGATTGATGT---TCAACCACTTAATC
i cb4.chrX             C 0 I 938
s caeRem4.Crem_Contig0 1022137  93 -  4500979 GATGAGACACCGAC-----TGACT---GGAGGAGTGACCGATTGACGGTATTGCGTGATCGTGATATTTATTCAAACGGATTGATGT---TCATCCACTTAATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5991825  96 + 20921866 GATGAGACACCGAC-----TGAA---GGGATGAGTGAGCGATTGACAGTATTGCGTGATCATGATATTTATTCAATCGGATTGATGTTCCTCTTCCACTTTATC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2294157  99 +  4147112 GATGAGATACCGAC-----TAAAGTTGGAAGGAGTGGTCGATTGACGGTATTGCGTGATTATGATATTTATTCAATCGGATTGATGTTCCTCATCCACTCTATC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I

a score=-326.000000
s ce10.chrX            3981862  8 + 17718866 TAAGTGAG------------
s caeRem4.Crem_Contig0 1022230 20 -  4500979 AACTTGAGTATCCATCAGTG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5991921  8 + 20921866 AAGTTAAG------------
i caeSp111.Scaffold630 C 0 I 160
s caePb3.Scfld02_0     2294256  8 +  4147112 AAGTTGAG------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9111160 938 + 21540570 I

a score=831.000000
s ce10.chrX            3981870 9 + 17718866 CAAATATGT
s caeRem4.Crem_Contig0 1022250 9 -  4500979 CAAATATGT
i caeRem4.Crem_Contig0 C 0 I 156
s caePb3.Scfld02_0     2294264 7 +  4147112 --TGTACAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9111160 938 + 21540570 I
e caeSp111.Scaffold630 5991929 160 + 20921866 I

a score=-5614.000000
s ce10.chrX            3981879 460 + 17718866 TCGGGCGAGGTTTATTATGAAAGTGTATGTTTCTAGGATACTGTTTTACGGAACTTATAATCTTGAGAAATCTTGTAAAATGTGAGCAGTGTAAAGTTAACAATTTTCAGTTAGTTTTGCAGTATTCAAACAGGTTTTTGATGAATAAAAGGATGAACTATTCGAGGTTTATGAGATTTTGAGCTCGAAATGCACACATAAAAAAAATTTG--TCTACCCGTTTAAATTGACAGAAATATTCTATCTGTTATTCGATTTTTTTGTGGCAGCTAACAAATTTATGGAAATCACCGCGCACCGTTTTGAACTGTCAGAAATTTCAGAATTTGAGAAATATCATACATTTTTTTTGTTTTTTAGAACGTAGTATCGTTTCTGTATACTTTTACTCGTTCTTATTTATCTAGGTGAACCGGTACCAGTTAATATTTAATAAATCTATACACAGCCTGTAGTTAAAA
s caePb3.Scfld02_0     2294271 228 +  4147112 --------------CAATGCAAAT-------------ATGATTTATTACATCATATAGAATCTTAGGAA----------------------------------------------TTTACTGTATTTGG----------GATGAAAAAGA-----CACAATGGGATATTTCCGGTA--ATAACCTAGAGATG---------GCAAGCTTTGCACCCTCCCGATCAGTTTTA---------GCTAActttcatacttttttattGCATAAATCAA-AAACCTCTGGTA------------TGTTTTGTACTGGAGGAATATTCAAA--TAGAGAA---------------------TTTTGGAATATGA------------------------------------------------------------------------------------------AGAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9111160 938 + 21540570 I
e caeSp111.Scaffold630 5991929 160 + 20921866 I
e caeRem4.Crem_Contig0 1022259 156 -  4500979 I

a score=-2135.000000
s ce10.chrX            3982339 47 + 17718866 ATCCTTTGAGTTTAAATTAACACAAATCAGAATTGACCACTTTGAGT
s caeSp111.Scaffold630 5992089 39 + 20921866 attctgtaaattcgaaaaacc-taaat---aattgataattt----t
i caeSp111.Scaffold630 I 160 C 0
s caePb3.Scfld02_0     2294499 15 +  4147112 ATTC-------TCAAACTACC-------------------------C
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9111160 938 + 21540570 I
e caeRem4.Crem_Contig0 1022259 156 -  4500979 I

a score=71955.000000
s ce10.chrX            3982386 256 + 17718866 -AAAAAATATAC-----ATTTTCAAACATAAA-----ACGTGCCTCTTCTTTACACAAGCACG------GTGACGG--------GTAG----AGAAGGTGTGAGTAAACTCA---AAAACGGGTGGTGAGAACACCAC---AAA-TGAATCATATCGG----TGTAACAATAGAG------CACAGGTAACTATTCAAAT---------TAAAGGGTAACAAGGTAAACTG-------AGTTAGGGGT--GCAACAATACAAAGCATATCAGTATTTGTTACCGGAATT--------------GGAAACAATAGAAAAGTGT-TCCAAGGTTGTT
s cb4.chrX             9112098 305 + 21540570 -aaaaaaagtac-----aatt-----ttcaaa-----ca-caTTGCTTCTTTACACAAAAATTCGGACAATACAAGTACGAGTAGTGG--ACAGAAGACCTGAGTAAACTCGCAAAAAACGGTTGGTGTGAATGCCAA--AAAAGTGAATCA-GCGAAGATGGGGAACAATGGTCGACGC-AACGAGTAACTATTCAAATTTGTCTTGTT-----GTAACAAGAATTACTC-TCTGCAAGTTATTGTTCGACACAGGGACCAAGCATATCAGTGTTTGTTACCGGAATCTCGTGCGATGAAT-AGAAACAATGGAAAACATTCCCCAAGGTTGTT
i cb4.chrX             I 938 C 0
s caeRem4.Crem_Contig0 1022415 273 -  4500979 -AAAAATGTTAC-----ATTTTCGCATTCAAA-----AA-AGTCGCTTCTTTACACAACCACT--GACGGTGACAG--------GTAA--AGAAAAAGACTGAGTAAACTCT---AAAACGGTTGGTGAGAAtgccaa--aaaa-tgaatcacGCGAA----TGGAACAATGGCGTACAA-TACGAGTAACTATTCAAAT-----GTGTT-----ATAACAAGACGTACTC-CC----AGTTATTATT---------AAGCAAGCATATCAGTATTTGTTACCGGAATCCGGGACG-TGAAT-AGGAACAATGGAGAACATG-ACCAAGGTTGTC
i caeRem4.Crem_Contig0 I 156 C 0
s caeSp111.Scaffold630 5992128 278 + 20921866 aaaaaagactactaaaaaaattagaatacaaaagaagaatcattGCTACACTAAGCA------------ACGGACG-------AGTAGTCACGGGCAGACTAAGTAAACTCA---AAAACGGTTGGTGAGAATGCCAC--AAAA-TTAGTCATTCTAA----TGTAACAATGGCTGACGGGTACGAGTAACTATTCAAAT---------C-----GTAACAAGAACCACTGACA----ACTTATTGTT-------GAATATAAACATATCAGTGTTTGTTACCGGAATCTAATGCA-ACAAT-AGGAACAATAGGGAACAAT-ACGAAGGTTGTT
i caeSp111.Scaffold630 C 0 I 393
s caePb3.Scfld02_0     2294514 283 +  4147112 AAAAAAGAGTAC-----aatttcaaatacaaa-----aatcgtCGCTTCTTTACTCAAGAACC---ACTATGACAG-------GGTGG--ACAGAAAGACTAGGCAAACTCC---AAAACGGTTGGTGAGAATgccacaaaaaa-tgaatcattctgT----TGTAACAATGGTGGACGAGTACGAGTAAGTATTCAAAA---------T-----GTAATAAGAAACACAG-CA----AGCTATTGTT-GCAAGGGACGGGAAGCATATCAGTGTTTGTTACCGGAATTAGGCGCA-GAAATGgggaacaaaagaaaacatt-ccCAAGGTTGTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I

a score=374.000000
s ce10.chrX            3982642 7 + 17718866 TGGTTGT
s cb4.chrX             9112403 7 + 21540570 TGCGTGT
i cb4.chrX             C 0 I 1002
s caeRem4.Crem_Contig0 1022688 7 -  4500979 CCGGTGA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2294797 7 +  4147112 TGGATAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e caeSp111.Scaffold630 5992406 393 + 20921866 I

a score=-1813.000000
s ce10.chrX            3982649 6 + 17718866 CCGGCA---
s caeRem4.Crem_Contig0 1022695 6 -  4500979 -AAGAAG--
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2294804 6 +  4147112 ---GAGGTA
i caePb3.Scfld02_0     C 0 I 780
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeSp111.Scaffold630 5992406 393 + 20921866 I

a score=-6102.000000
s ce10.chrX            3982655 643 + 17718866  
s caeRem4.Crem_Contig0 1022701 411 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2294810 780 +  4147112 I
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeSp111.Scaffold630 5992406 393 + 20921866 I

a score=118.000000
s ce10.chrX            3983298 8 + 17718866 AACCTGCC
s caeSp111.Scaffold630 5992799 8 + 20921866 aatttatt
i caeSp111.Scaffold630 I 393 C 0
e caePb3.Scfld02_0     2294810 780 +  4147112 I
e caeJap4.Scaffold1521  103460 1123 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeRem4.Crem_Contig0 1023112 0 -  4500979 C

a score=-3921.000000
s ce10.chrX            3983306 56 + 17718866 ATTCTTTCTGCACT----ATTTTCACCAATCTGTTTTTTTTGCGTCA--ATACTTTTTATTG-
s caeRem4.Crem_Contig0 1023112 46 -  4500979 ATCCCTATCATTTTCACCACGtcc-caaaaaaggttttcattCCTCA----------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5992807 57 + 20921866 attcttgttgtttt----attttt-ccagttaaatttgtttttttcagaatcactgTTTTTG-
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  104583 56 +   152914 atttttcttCCCTT------TTCC-TTAGCAAACTCTATCTTTTACACCCACATCTTTCATGA
i caeJap4.Scaffold1521 I 1123 I 29
e caePb3.Scfld02_0     2294810 780 +  4147112 I
e cb4.chrX             9112410 1002 + 21540570 I

a score=-3092.000000
s ce10.chrX            3983362 31 + 17718866 CTCGAATCACAAATCCACCACCTCGAGGATG----
s caeRem4.Crem_Contig0 1023158  6 -  4500979 ---GCCATC--------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5992864 35 + 20921866 ATTGACATTTAAATTTACGAAATTGAAACGGAATG
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2294810 780 +  4147112 I
e caeJap4.Scaffold1521  104639 29 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I

a score=-1418.000000
s ce10.chrX            3983393  2 + 17718866 CA-------------
s caeSp111.Scaffold630 5992899  1 + 20921866 --------------T
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2295590 15 +  4147112 CAacatttgagattt
i caePb3.Scfld02_0     I 780 C 0
e caeJap4.Scaffold1521  104639 29 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeRem4.Crem_Contig0 1023164  0 -  4500979 C

a score=29694.000000
s ce10.chrX            3983395 132 + 17718866 TCATCAGAAATTCTCGAGTTCTTACTGCATCAAAGCCA-----GAATCACATGTTATCACATACATTCCTAACGA--TTTTCTCCAGCAATTTACGTAAGCATTCATAATTAACATCCTCTTCTCTTCGGTCCAAAAAA
s caeRem4.Crem_Contig0 1023164 124 -  4500979 TCatatgaa------------attcaaaactgaacCAA-CGCCGAATCACATGTTATCCCATACATTCCTAACAC--TTTTTTCCTGCAATTTACGTAAGCATTTATAATTAACTGCTTTTTCTATGCGGTAGAATAAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5992900 133 + 20921866 TTCTAGAAACATTTCTGATTCATCCGATATTCATCCGG-CGCTAAATCACATGTTGctaaatacattttcaacGAATTTTTTATCTGCAATATACGTAAGAATTCATAATTAACTATCTCTTCTACTCTGTCAT-----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2295605 129 +  4147112 ttcgaaaaaaacttttacttCATTTAATATTTATCTGG-------ATCACATGTTATCGCGTACATTCCTCACGA--TTTTCTCCTGCAATTTACGTAAGCATTCATAATTAGA-AACTCTTCTCTTTGGTCGAAGAAA
i caePb3.Scfld02_0     C 0 I 95
s caeJap4.Scaffold1521  104668 117 +   152914 TCATCCCAA------------ATTCTACACCTGGACAAACGCAAAATCACATGTTATCATatgcaat----------attttttttgctctttacGCAAGCATCTATAATTAACGTCCACTTCTTCCAGAGTGAGAAGG
i caeJap4.Scaffold1521 I 29 C 0
e cb4.chrX             9112410 1002 + 21540570 I

a score=536.000000
s ce10.chrX            3983527 14 + 17718866 AGGGGGCGTTGAAA
s caeRem4.Crem_Contig0 1023288 11 -  4500979 ---AAGTTTGAGCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993033 14 + 20921866 AGAAGGCGTGAAGA
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  104785 14 +   152914 CGAGGATGATGAAA
i caeJap4.Scaffold1521 C 0 I 111
e caePb3.Scfld02_0     2295734 95 +  4147112 I
e cb4.chrX             9112410 1002 + 21540570 I

a score=-1277.000000
s ce10.chrX            3983541 2 + 17718866 AA------
s caeRem4.Crem_Contig0 1023299 8 -  4500979 GTGAAACA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993047 2 + 20921866 GA------
i caeSp111.Scaffold630 C 0 I 139
e caePb3.Scfld02_0     2295734 95 +  4147112 I
e caeJap4.Scaffold1521  104799 111 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I

a score=91.000000
s ce10.chrX            3983543 1 + 17718866 A
s caeRem4.Crem_Contig0 1023307 1 -  4500979 A
i caeRem4.Crem_Contig0 C 0 I 158
e caePb3.Scfld02_0     2295734 95 +  4147112 I
e caeJap4.Scaffold1521  104799 111 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeSp111.Scaffold630 5993049 139 + 20921866 I

a score=0.000000
s ce10.chrX            3983544 630 + 17718866  
e caePb3.Scfld02_0     2295734  95 +  4147112 I
e caeJap4.Scaffold1521  104799 111 +   152914 I
e cb4.chrX             9112410 1002 + 21540570 I
e caeSp111.Scaffold630 5993049 139 + 20921866 I
e caeRem4.Crem_Contig0 1023308 158 -  4500979 I

a score=638.000000
s ce10.chrX            3984174 35 + 17718866 TGAAACTATTTTCAA----AGCTAGTCTCGGTTAAAAAT
s cb4.chrX             9113412 34 + 21540570 taaaatttttttcaattggaattaccct-----aaaaat
i cb4.chrX             I 1002 C 0
e caePb3.Scfld02_0     2295734 95 +  4147112 I
e caeJap4.Scaffold1521  104799 111 +   152914 I
e caeSp111.Scaffold630 5993049 139 + 20921866 I
e caeRem4.Crem_Contig0 1023308 158 -  4500979 I

a score=91.000000
s ce10.chrX            3984209 1 + 17718866 T
s caeRem4.Crem_Contig0 1023466 1 -  4500979 T
i caeRem4.Crem_Contig0 I 158 C 0
e caePb3.Scfld02_0     2295734 95 +  4147112 I
e caeJap4.Scaffold1521  104799 111 +   152914 I
e cb4.chrX             9113446 0 + 21540570 C
e caeSp111.Scaffold630 5993049 139 + 20921866 I

a score=7289.000000
s ce10.chrX            3984210 43 + 17718866 CCATCAAAAAACGG---ACACTTTCCTGGAAATGACTCATTTCACA
s cb4.chrX             9113446 41 + 21540570 ----ttaaaatttgaacattatCTCAAG-TTATGACTCATTTCCGG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1023467 43 -  4500979 TCATCCATAACTGG---attatttctagaaaatgacACATCTCCCG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993188 40 + 20921866 CTATTAAAAGTGCG---GTATGTTCGAGGAA---ACTCATTTTCCG
i caeSp111.Scaffold630 I 139 C 0
s caePb3.Scfld02_0     2295829 43 +  4147112 CTATCTGAAACTAG---ATGTTTTCCTggaaatgactcattttccG
i caePb3.Scfld02_0     I 95 C 0
e caeJap4.Scaffold1521  104799 111 +   152914 I

a score=44610.000000
s ce10.chrX            3984253 315 + 17718866  
s cb4.chrX             9113487 334 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1023510 392 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993228 322 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2295872 361 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  104910 388 +   152914  
i caeJap4.Scaffold1521 I 111 I 745

a score=-48245.000000
s ce10.chrX            3984568 226 + 17718866 CTGGCACAT------------------TGtttattttttattttttat-----------tttCGGTTATCATTTTTTGAAAACTGAA-----CATCT-------------TTTTGAATTTTTTTTTGCATACATGTTATGT-TACTGATTTGTGTACATTTTGTACATAGA-CTGC---------AGTTATT--GAA----------------TGTAGACA--AAAGTGTCATCTCTACGGGATTCT----AGCGACCGAAAACCTTGA--AATGTTTCGTCTA-GTATTCAGGTTGTTCAAGACAATTTT
s cb4.chrX             9113821 258 + 21540570 ---------------------------GACGTGTTT------TTCCCTGAAAACTCCTATTTT---TGTGATTCCTATAAAACTGAG-----AAATGCGAAATAAACGTTTTCTCGGAAGTTTCTCCAGAGACTGTTATCgctactgtattttt----ttttgtttttaatacAAC----TAATcgtttatttcaattttttgtg---acaGCTGTAGACAGAGGCGTGTCATCACTACGGAGTCGTTCTCGATGATCATAAACCTTCACCATCTGTCGTGATT-GTAGTTTAGATGTTCTAGAAAACTCT
i cb4.chrX             C 0 I 136
s caeRem4.Crem_Contig0 1023902 269 -  4500979 ---GAACGACCCCTCCTCTGCCAATAAGACATTTTTAACATGTTTCGTACGAACACCTA---------TGATGCAACAGaaacctcg-----tttttctcaagaGACGGTTTACATAAtgtttttt--gtgtctgtt-tgtcttctgttttttg----ttttggataTGTT-CAGC--CACAGTCATTTATT--GAGTTTTAGTATTCGCAGCTGTAGAAATAAACGTGTCATCTCTACGGAGTTGCT---GATGATCATAAACCT-----ATTATTCTTGTTTAGTAATGTACgtatttcaa-----ttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993550  96 + 20921866 ---GCAAAT-----------------------------------------------------------------------AACCGAGATGTTTTCTT------AGACAAGTTTTGT--------------------------TCCTGGG------------------------------------------G--AAGTTTTGAT---------GGTAGACAG-ACTGTTTCTT------------------------------CCTCTT--AT------------------TTAGTGGTTCTT-----GCT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2296233 281 +  4147112 ---gaacatctctcacttttcgttt--ctcttttttcccattctgttttcgaaaacggTTTTGAAATATCTCGCCATTCAAACCGAGAtgattttttcccgaaaaactgttttggtttatttttcctcatgttttttgtttgttctgtgttttc---------GATATGTT-CAGCCTCACAGTCATTCATG--AAATTTTCGTTTG-GCAGCTGTAGACAC-GACGTGTCATCTCTACGGAGTCTTT---GATGATCATAAACCTCTG--ATGTTGTATTCTA-GTAATGTTAATGTTTGCC-----ACT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  105298 745 +   152914 I

a score=-9478.000000
s ce10.chrX            3984794 171 + 17718866 TGTCTGTTTATGAATCAT----TTCGATGT-----ACATTCCATC--------GGGTTGAAAGATCGAATCAGAT------ATTTTGTGTT----------GTGGATTTT----------------TCAGAGGA---------ATCAGTTTAAAAGACATCAATCTCCACTTCACA-TTTGATTGATCGATTTGTTTCGAAACCTTTGTTGTGTTTGTTTGATCATTTTG
s caeRem4.Crem_Contig0 1024171 207 -  4500979 tgtagtttgctGATTCATCAGATTTGTCTTCCAGAATATTCGAACCAGACAAAAGATCGAAACCACAAACCA---------TGTTCATGTTTAT-------CTGTAGTCCAGtctcaaaatctttttctgCAAAGAAATTCAgatcatttcaaaatatatcaTGTCCcgtttcactttttgattgatcGCTCTGTTTCGGAAGATT-----TGTTTGTTtgatcattt--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993646 118 + 20921866 --CAATTATAT-Atttgt----tttgtgtt--------ttcaat---------ATGTTCAAACCACAG-TCAatc------atttcgtttt----------tgatAGTTT--------AGCA----GCTGTAGA----------------CACGACGTGTCA--TCTCTCGGGAGTCTTTGA-------------------------------------TGATCAT----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2296514 195 +  4147112 TGCATTTGTATGATTCAT----TCTGGGGT--------TTTGATTCTAGAACAATTTTGAGACGAAAgaccaattttcgaaatttggttttcattcTGGAATTAGGGTTCCGG-GGAAAACATTTTGCAGAAGA----------------CA-AAAGGAtcaattctcttttcaaattttgattgatcgctttgttttaaaaactt-----tgtttGTTTGATCGTTTGG
i caePb3.Scfld02_0     C 0 I 29
e caeJap4.Scaffold1521  105298 745 +   152914 I
e cb4.chrX             9114079 136 + 21540570 I

a score=-2871.000000
s ce10.chrX            3984965 42 + 17718866 CAAAAAGCCCATT-AGCTTTTCAAAACTAGAAAAGCGTCGTTG
s caeRem4.Crem_Contig0 1024378 31 -  4500979 caaaaatgtgatt--gatttacaa------aaaaacatc----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993764 22 + 20921866 -AAACCTATAATTTGAAGTCACG--------------------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2296709 29 +  4147112 I
e caeJap4.Scaffold1521  105298 745 +   152914 I
e cb4.chrX             9114079 136 + 21540570 I

a score=-56633.000000
s ce10.chrX            3985007 536 + 17718866  
s caeRem4.Crem_Contig0 1024409 223 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5993786 362 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2296738 380 +  4147112  
i caePb3.Scfld02_0     I 29 C 0
e caeJap4.Scaffold1521  105298 745 +   152914 I
e cb4.chrX             9114079 136 + 21540570 I

a score=27998.000000
s ce10.chrX            3985543 61 + 17718866 AATTTGTTTTTGTCC-AGTTATCCTG-ATGAACCACACTGGAATGCATATGTTCGAAGC---TTTC----
s caeRem4.Crem_Contig0 1024632 61 -  4500979 ATCTTGTTTTTATCCAAGTTATCCCG-ATGAACCACATTAGAATGCATCTGTTCGGAGGCCG--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5994148 58 + 20921866 AGTTTGTTTTTGTCCGACTAACCCTG-ATGAACCACATTAGAATGCATCTGTTCGGCCG-----------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2297118 58 +  4147112 AGTTTGTTTTTGTCCGAGTTATCCCG-ATGAACCACATTAGAATGCATCTGTTCAGGCG-----------
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  106043 63 +   152914 agtttgtTTTTGTCTGAGTCATCTTGAAGGAACCACATTAGAATTCATTCGTTTGGCAG-------TAGT
i caeJap4.Scaffold1521 I 745 C 0
e cb4.chrX             9114079 136 + 21540570 I

a score=132346.000000
s ce10.chrX            3985604 389 + 17718866  
s cb4.chrX             9114215 434 + 21540570  
i cb4.chrX             I 136 C 0
s caeRem4.Crem_Contig0 1024693 374 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5994206 386 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2297176 388 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  106106 423 +   152914  
i caeJap4.Scaffold1521 C 0 I 1752

a score=-3537.000000
s ce10.chrX            3985993  6 + 17718866 C---GATTG--------
s cb4.chrX             9114649 14 + 21540570 T---GAGAGTCCATTGG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1025067 14 -  4500979 T---GAGAAACCAATTG
i caeRem4.Crem_Contig0 C 0 I 218
s caeSp111.Scaffold630 5994592  6 + 20921866 T---GAGTG--------
i caeSp111.Scaffold630 C 0 I 297
s caePb3.Scfld02_0     2297564  9 +  4147112 TCGAGATTG--------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I

a score=-3018.000000
s ce10.chrX            3985999 60 + 17718866 GACCAAGAAT---CAGGGGACACCCTAGTTTCTGAATGttttatatt---------------atataattttataGTC
s cb4.chrX             9114663 69 + 21540570 AACCTAGGGT---CA------ATTGTAGTTTCTGAATAAAGGACATTGGATCacgaagaaaaatatgatttgaTAGTT
i cb4.chrX             C 0 I 136
s caePb3.Scfld02_0     2297573 24 +  4147112 --GTGAGGGTCCACA------ACTTTGGCTAC----------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e caeSp111.Scaffold630 5994598 297 + 20921866 I
e caeRem4.Crem_Contig0 1025081 218 -  4500979 I

a score=-1706.000000
s ce10.chrX            3986059 130 + 17718866 AAAGTTGAGTTAAA--AATGTTTCTTTTCTGAAAACCTGAGCAGGCTTTGATTTCTTCCTTGTCTTGTACTGTATTTCCTGTTTTTTGTACTTCTGAATGTAATGTAGAATTAGGACCTTTGAAATAGGTCA
s caePb3.Scfld02_0     2297597  71 +  4147112 AAAATTGGTTGGAATGAATATT---------AAAAAGT------------ATTTCAATCATGCCGGGTAC----------------------------------ATAAAACAGTTACCTTCAAACT------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9114732 136 + 21540570 I
e caeSp111.Scaffold630 5994598 297 + 20921866 I
e caeRem4.Crem_Contig0 1025081 218 -  4500979 I

a score=-34151.000000
s ce10.chrX            3986189 559 + 17718866  
s cb4.chrX             9114868 717 + 21540570  
i cb4.chrX             I 136 I 9
s caePb3.Scfld02_0     2297668 443 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e caeSp111.Scaffold630 5994598 297 + 20921866 I
e caeRem4.Crem_Contig0 1025081 218 -  4500979 I

a score=-4231.000000
s ce10.chrX            3986748  96 + 17718866 TCTTAAACC-------TGTCTCTTGAC-CCCCACTTCATTCGTACAAGTCGCTACCAGACAACGTTGGATATTCACACAGAAACGTA----AAGACTTGTGGAAGAAG-------------------
s cb4.chrX             9115594 113 + 21540570 TCTCAAGCACCCTCTTTTTCTCCTCCCTCCCAACATTTTCC---ATGGTTTCCACTCGAC--------ATCTTCCCACAGAACCTCGTCTCTCTACACTCGAAATT---TTCTTTCcaagctggaaa
i cb4.chrX             I 9 C 0
s caeRem4.Crem_Contig0 1025299 112 -  4500979 TCTCAAGTA-------TGTTTCCTGACGACATACCTTTTCTCCGGTGGTAGTCACCCAGCAACA-CAAATATTCCCACAGAAACATG----TCTACATTTTCAACCAAGCGCCTTACAAGC---ACA
i caeRem4.Crem_Contig0 I 218 C 0
s caePb3.Scfld02_0     2298111 101 +  4147112 TCTCAAGGAC------TTTTCTCTAACAACGGGATCCCATTCTGTCGGTAGCAACCTGACGACG-CAAATATTCCCAGGGAAACATG--CCTCCACATTTCCAACAAA-CG----------------
i caePb3.Scfld02_0     C 0 I 2
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e caeSp111.Scaffold630 5994598 297 + 20921866 I

a score=101591.000000
s ce10.chrX            3986844 403 + 17718866 ------TTTCT---CACAA--CTTCCATACTTGAATTTTA---------TGAAAATTGTCAG-AACAT---TTTCTGTACAAACTGTCTCCA--CTTCG---TCAATTG-CAAAATA---------GGAATGCATGTCG---CGAACAAGGCAATTGGCATCGATTCCGACGTCTGTCATTTGCAACTACTT-TTCCTCATTTTTTTTGTG--TTACCCCTACGCATTCACTTATTTTTTTTCTTTGCATGGCTTCGACGTCATATCTTTTTCCGCAGATTTTTT----------------------------GAACAAAAAATGGATTTGAAAAAGGAAGAA-GCTGTTCGAAAATCTTGTTGAGCTATGTTGCCTTACTCGAGGTCCGCTTAAATACGACAATACACCTAATCATAGTGGCCAAGTGCACAAGCGCAATTCTTTTGTTT----------CCTT--------------------ATCGAGTTTGCACAACTTTTCC
s cb4.chrX             9115707 457 + 21540570 tttt--tttttcg--------ttggcAACCcctcaatttt---------tggaaaagaaaagtgtCATCCATTTCCGT-CAAACTGTCCAAG--CATCC-----------GAAACTGTTTGGTAGAGGAGGGTGggaggaaa-aaaggagacaATTGGCATCAATTCCGAAGCCTGTCATTTCCAACtattt-ctattttatttt--------gt-cttTCGTGCGAC-CCCTATGCATTTTATTTTCC-GCCTTTTACGTCATatctttttgcaaaaaaaataa--aatacggaaagtaaatgggaagttagaaaaaagaagaagaagaaaa--agaaaaagcgtTGTTCGAAAATCGGGTTGAGCTATGTTGCCTTGAAGGGGTTCCGGTTAATTACGACAATACACCTAATCATAGTGTCCAAATGCACGGACGCAGCACTCTATTCCTCTTTTTCcacttcttctcttcttttgtttCCTTATCGAGTTTGCACAACGTCTTC
i cb4.chrX             C 0 I 244
s caeRem4.Crem_Contig0 1025411 428 -  4500979 TTTCCATTTATCGATccac--ttttccttctttcaatttcatatttctacAAACACCGAAAGTGTCATCTATTTTCGT-CAAACTGTCCAAC--TATTCCATTTTCATA-CAAACCATT-------GGATGGCGAAACGACGTGAACGAGGCAATTGGCATCGATTCCGAAGCCTGTCATTTGCAActactt-tccttttttgtt--------gtgCCCCCACGCAATGACTTCTTctccttatttttt--ctttcgacGTCATATCTCTTTTCGCAGA------------------------------TTgcaagagaaaagaggaaga-------aaaaaccgTTGTTCGAAAATCTTGTTGAGCTCTGTTGCCTTGAAAGGGTTCCGGTTAAATACGACAATACACCTAATCATAGTGACCAGATGCACGGAC---GCACTCTacttt----------cctcttctcttcttttgtttcctTATCGAGTTTGCACAACT-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5994895 380 + 20921866 ------tCTCT---CCCAA--------GTTTTACATTTT--------------AAACGACAGTGACATGCATTTCTGT-CAAACTGTCTTTCCTCATCT---CCACATA-CAAAGTATC-------GGAAGGCACGT-----TGAACAAGGCAATTGGCATCAATTTGAAAGCCTGTCATTTGCAACTGCTTCCCCTGTTTTTTAGCCTTG--ATGCCCCCACGCattgtctt-----tttttattgtc--GCTACGACGTCATATCTCTTTTCGGAAAGATTTCTGCAAAaggaaagt----------------gaaaaaagtagagcttag--aaaaaaagcgttGTTCGAAAATCGCGTTGAGCTCTGTTGCCTTCTGAGGGTTCCGGTTAAATACGACAATACACCTAATCATAGTGGTCAGATGCACGGACGCAGAGCcctctttt----------ctat------------------------------------------
i caeSp111.Scaffold630 I 297 C 0
s caePb3.Scfld02_0     2298214 415 +  4147112 ------TTTCTAGCCCCAATCGATCCCTTTCTATAATTTCCTTCTTTCGTATAAATTGACAGTGCCATCTATTTTCGT-CAAACTGTGACACCACATCT----TACATACCAAACCATA-------GGAAGGCACGTCGACATGAACGAGGCAATTGGCATCAATTCCGAAGCCTGTCATTTGCAACTActt-gtctgtttttttttctttccgtgTCCCCACGCATTGTCTT-----TTTTGCCTCTC--CCGCCGACGTCATATCGCTTTCCGCGGAGATTGC--aaaaaggaaagtaa------------aagaaaaaagtaaaagttaggaagaaaaaaCGTTGTTCGAAAATCGTGTTGAGCTATGTTGCCTTGAGAGGGTTCCGGTTAAATACGACAATACACCTAATCATAGTGGCCAGATGCACGGACGCAGTCCTCtatcct----------cttt------------------------------------------
i caePb3.Scfld02_0     I 2 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I

a score=-23396.000000
s ce10.chrX            3987247 226 + 17718866 ATTTTTCTCTTTTGCACGAATATAGCTTCCGAGTTTTGTA-AACTTTTGTATGATGTATGATTTGATTTTGGGATGTGCTAATAGATTGAGCACAGAAATGTTTTTACATGTTTCACCATGGTATTTTGCCACTCTAGCAGTATGACAGATTTAAAAAAATTTCCT------------CACTTGAGACTATCTACCAAATCCCAACGGTTCACTCTAATTAGGAAAAAAACTAAAAATG---------
s caeRem4.Crem_Contig0 1025839 125 -  4500979 -------------------ACTTCTCTATC----CATGAAGAAGAACTTTTGCAAGTA--------------------------------------------TCA------------------------------------ATTGACCAAACTAGGTAATATTCTG---ATAATACTTCTTCGTTCACGATCT---------------TTTGCCTGCGTTC--AAGATTCCAAACAATACAAAGAACG
i caeRem4.Crem_Contig0 C 0 I 56
s caeSp111.Scaffold630 5995275 115 + 20921866 -tctttctctttt------gtttccttATTGAGTTTTGTACAACTACTGCTCACTGCA--------------------------------------AAGTCTTTT------------------------------------Gtggaaaaagtt-----tcatttag------------TTCCTGTTACTGTATTCC------------TTCAATCACTT--------------AAattg---------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2298629 127 +  4147112 -tct---tctttt------gtttcctTATCGAG-TTTGCACAGCTACTCTTCAGAGCAC------------------------------------TAAATGTTCT------------------------------------TTTGCAGGAGTCAGAAATAATTCAGGATGAGCGAGTTTTTTGGAGACTATAT---------------TTTGGTtgcct--------------acagta---------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116164 244 + 21540570 I

a score=-5111.000000
s ce10.chrX            3987473 94 + 17718866 ATGTTTTTTTTTTCATGGAGTTTTTCTGAAGTTGATGTTACTATTCTTGATGATCAGAAAACTTTATTAGTTTTAAACGCTGTGTTTTAATACT
s caeSp111.Scaffold630 5995390 40 + 20921866 ata-------------------tttcaaaatttccagtccc--tttttcat---------------tttaattcaa------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2298756 31 +  4147112 a-------------------------------tccagttctagtttttgtt---------------tttgttccaaa-----------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116164 244 + 21540570 I
e caeRem4.Crem_Contig0 1025964 56 -  4500979 I

a score=-18321.000000
s ce10.chrX            3987567 151 + 17718866 TGATGATTACAAAAAATAAAAAATATGAGCAAAAAGTGTTGTCAAGTTCTAAATTTCTTTTGG---TGGTTTAAGTACATTTGATGTTTCTCAATTCTTCGATTTTTG----GTCTCAAACATACATTATATTTTTTGAAAGACCAGTCTAAAAATTG
s caeRem4.Crem_Contig0 1026020  72 -  4500979 TGTAGATCAGACCAACCACAAAATATGGACA----------T-AAacctccaattttttgttgccCTG-----------------------GAATTTTTCG-----------GTCTA-----------------------------------------
i caeRem4.Crem_Contig0 I 56 C 0
s caeSp111.Scaffold630 5995430  87 + 20921866 ---------------CCACAAATGGTTTTAA------------ATGTCAGTCAGAGGGTATAAGTGTGAT---------------------GAATGGGTCGGCTGTCAAAACGACAAAAATACA-----------------------TCTACAAAATT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2298787  90 +  4147112 -------------gTTCACAAAAGTTCTTCa----------tcctgtttttcatttcttctaaCATCGATTCAAATA-------------GAGATAGTTTGAGTGTCA----GTCAAAGGG----------------------------tacaaattg
i caePb3.Scfld02_0     C 0 I 69
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116164 244 + 21540570 I

a score=-5163.000000
s ce10.chrX            3987718 78 + 17718866 TATAATTCAACAAACTCAGACTGCTACAAAAAAAAATAATTTCGAATAATTTGCCCTCAAGTCAAATATTTTCTAGTA
s caeRem4.Crem_Contig0 1026092 15 -  4500979 ------------------------------------------------AACTACTTTTGAAtg---------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995517 36 + 20921866 ---CGTTC-------------------------------TTCC-----AGTCGCCCTCAAATCTCATTTATCTTT---
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2298877 69 +  4147112 I
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116164 244 + 21540570 I

a score=-1647.000000
s ce10.chrX            3987796 17 + 17718866 CATTTATTTTTCTGGCA
s cb4.chrX             9116408 17 + 21540570 cattttttggtctgtga
i cb4.chrX             I 244 C 0
s caeRem4.Crem_Contig0 1026107  3 -  4500979 -----------cag---
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995553 17 + 20921866 CGCTTCTTTGcgtgttt
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2298877 69 +  4147112 I
e caeJap4.Scaffold1521  106529 1752 +   152914 I

a score=37580.000000
s ce10.chrX            3987813 129 + 17718866 TCCCGTTTTAGAGATTTTTATCCC-------------ATAAA--TCAGAAAGCGCGACCGAAAAGAGCAACGATTTGCGCACTTATCCCATTAAGCAATTTGCATCTAATTGACTTTTACT-----ACCCTCATTTTTGTCTTTCGGTA
s cb4.chrX             9116425 137 + 21540570 --tcttttttattctgattttccctctctcactcaaaaaaaa------acattccgaCCAAGAAGAGCAACGGTTTCCGCACTTATCCCATCAAGTAATTTGCATgtaattgtaatttttttccgagTATTAG----tttttttCGGCA
i cb4.chrX             C 0 I 1380
s caeRem4.Crem_Contig0 1026110 132 -  4500979 ----ttttttcttctga--------ccCTAAATCCTAATAGATTTTCGAgaattcaactgaaaagagCAACGATTCGTGCACTTATCCAATTAAGCAATTTGCTTCTAATTGACATTTATT-----GCATTCAATCTCTTTCTCCGGTA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995570 120 + 20921866 ttctgttttt-----------------gggAGGCTtgttgaa--tcagaaaa----accgaaaagagCAACGAATTGTGCACTTATCCCATTAAGTAATTTGCATTTAATTGAC-TTCTCT-----gccctcattttctttctttgata
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2298946 142 +  4147112 tcccatttttcgcgtttttttccagtcagAATCcttgagaaa--tctgaaaaactgaccAAAGAGAGCAACGATTTGTGCACTTACCCCATTAAGTAATTTGCATTTAATTGACATTTACT-----Gccctcgttttctttttgagata
i caePb3.Scfld02_0     I 69 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I

a score=-12812.000000
s ce10.chrX            3987942 144 + 17718866 TTCACAGAAAATTGACTCTCTGAATCTTTTTGTG------TGTTTT-----TTATTCGTTTTAGCCTTTTCTTCTTTTTT----TTTTCTTCGAAACGACAG-----AGTCTTAAAACATGAGAA-------------------TGCGAATGGGCGCTTTTTTTCGTGGAATGGTATCATCAA
s caeRem4.Crem_Contig0 1026242 114 -  4500979 TTCGC-------------------tttttttGCGTAGGTTTGTCCTAGCTATTAA-GATTTTagcattttgattttc-tcaacGTTTTCTGC-AAACATCGT-----AAAACTATAACTGAAAAGAATATATTC----------TTTTGAG--------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995690  82 + 20921866 TTCGC--------------------TTTTTTGCA------TGGAAATGTGATTAACGG--------TTTTGCTTCTCTTTCAAGCTT--------------------AGTCTAAAAACCTTAAAA-------------------TTCGTAGAACA----------------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2299088 151 +  4147112 ttcg---------------------tTTTTTGCA------TGTCTTGACGATTAACGACTCGAGCTTTTTACCCTATTTTCACGTTTTATT---GACATCATaaaaaagtagtaaaaccgaaaaaaatggaatcgaAAAGCCATTTTTCAGGAGAGGTTCTTTT--TGGGATGGGTCTTTCAA
i caePb3.Scfld02_0     C 0 I 300
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116562 1380 + 21540570 I

a score=-14941.000000
s ce10.chrX            3988086 275 + 17718866 AACCATTCCACGAAAAAAAAAGTGGAAAGGCGTCATCAAAAATATA-GCGGATTCC---AAAACAATATA---TTTGGGAAAACTGTACAACTTGAAAAAATTGTAAAAAAATTGGTGTAGAACAATTATGAAATTGGAAAATAATCTCTCTGCGCTGACCGGAATCATTGTGCACTGACCAAAATGCTTTTGCACTGACCGAAATGTTTCTGCACTGACCGAAATGCTTTTGTACTGACAAAAGTTGTTCTCAGCAAAAATTTCAAAAAGGTTTT---GGAATT
s caeRem4.Crem_Contig0 1026356 164 -  4500979 ---------------------------------------ATCTATTCTCAAATATCgttgaaataattaa----atagaaagcc--------tatttcaaaatcaaatgaaaagggttt------ttttcgaaattgaaatcaaGACTAGAAGCTCGTAACGA---CTTTTTACATCG----------TTTTAC----------------------------AAATGAT-------------GAATagtttaaagaaaaa----caaaaatgtttaact------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995772 162 + 20921866 AACCTTACTAAG----------------------ATGGAATATATT-TCGGTTTGCATTAGCAAAGTTAATTTTATGCGAAATCAGt--aattgatgaaaatttAAGTCAGAACGGCCTAG----CTTGAGgagttcaattgaaaaatttgagaaagtGCC-----CTGTCTGCACT------------------------------------------------------------------AATTGCT--------------CAAAAATCTCTT---------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2299239 300 +  4147112 I
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116562 1380 + 21540570 I

a score=-44792.000000
s ce10.chrX            3988361 264 + 17718866 TTGAGAATTTTTGATCTAACACCGTATTTTTGATGTCCACAAAAATTATCGCTATTCGTAATTAAAATTTCTAGCAGGGCAATATG--CATTTTCGAAAATAGGAAAATATTTCAAAAATATTTCAAAGTTGACAAGTTAAAAAAAAAACTTTTCCTATAGTTC----TGAAATAT-------GCTCATTTC------------------------ATTGATTTTTCGCTCTATGAAAAATGACTTCTGG--------------TTA------------------------------------------------------------------CTTCAAAG--------------------------TTCCCAAAAACAGTGTACCAGTAAAAGATTAATTATCTTA
s caeRem4.Crem_Contig0 1026520 194 -  4500979 TCAGTAACAGTTGCTCACTAATCCCTACCTTTTTCACTA----ATTGAGCGTGCTT-GCAAC------------------GTCATTACTTATTTAGCA------ACAATGgctaaagaag------------------------aaaaacttt-----gatttc----tgAACAACCATttagatttctttt------------------ttgaacccTAGTT----------------TCCACCTGCCA---------Tactttta--------------------------------------------------------------------tagaaa-----------------aaagttgttttgcCAACGGAAGTTTT-----------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5995934 142 + 20921866 --------------------------------ATGTCTA----ATTGACCACACTT--CAAC------------------GTCATT--TTATCGCGAGG-----ACAATGGTCCAAGACA------------------------GACAACGTT-----GAGATT----TCAAAAGTCACA--GGTCCTTTTC--------------------------TATTT-----------GTAGAACATATTGCAA--------------TTA-------------------------------------------------------------------CTAGAAC--------------------------TTCTCAAGGACCacctt-----------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2299539 336 +  4147112 TTGAGAA------------------------TATGACCA---GAATGATCAAAAca--tgaccaaaa--------aaatgaatatt--tgacCTCGTTG---TAGTagtattctgaattcttttt------------------tgaaagtttt-----tagatTCGTCTCAATAATCACAACAAACCTTTTCCCTGCAACAACTGCTCTATAGTGCCTTATTTTTCTGCTCTA-ATTGAGCAACTTGCAACGTCATTTTTCCTTTTAGGCCGATGAACAATGCCAGAAAAaccttgatttttgagaagccATAGTTTTCCGTCCAATTCAATTTCTAGAACGCGAAATTTTACACCTGTCAGACTTTTTCTCCAAGAACatgttct--caaaaagtt--ttggctt-
i caePb3.Scfld02_0     I 300 C 0
e caeJap4.Scaffold1521  106529 1752 +   152914 I
e cb4.chrX             9116562 1380 + 21540570 I

a score=-21691.000000
s ce10.chrX            3988625  94 + 17718866 CTTGCAAC---CCATTACTTATTTTTTCCA-----AAATATTTCATCAC-----------AAA--ATTCCAA------------AAGAAAATCT---AGAAAGATGCGTACAAAACAATCCAATGAAGAA
s caeRem4.Crem_Contig0 1026714  70 -  4500979 ------------------TTGGTT--GGCAGTTCCGAATCTGACACCAAGAT--------AAACTACCACCA-----AAC----AGGACATCct----------------gaaaagaatagaa-------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5996076  70 + 20921866 ------------------tcagtttttcaaatta-tagTATGGGTTCAG-----------AAA--ACCAACA------------AGACCAAACT--------------Gagagaaaaagcgaaaaaaa--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2299875 112 +  4147112 -----------TGATTTCTTAGTTTCAGTAGTTAGTAGCTTAGTatcaagtttgaaattcaaa--accagCA-----AACTAGGAGGCCAAACTAGTAAaaggaaatagagaaaaaaaaccaaaaaaaaa
i caePb3.Scfld02_0     C 0 I 2
s caeJap4.Scaffold1521  108281 101 +   152914 CTTGGATCGCATgacattttaatt--aaaaattctcGGCTCGcgattctgca--------aac--accagcaccaacaacaacacaaccaaacc-----------------aatcccagccaaccagggt
i caeJap4.Scaffold1521 I 1752 C 0
e cb4.chrX             9116562 1380 + 21540570 I

a score=111925.000000
s ce10.chrX            3988719 235 + 17718866 ---GAGCAGAAAAAAAGAAAACAAAACATGGATTGG-CGAAATTAAATTGTTGCG-CTTTATGTG---GGGCAGTGTCGTTTCTTTTT------------------GGTGAAAGGAAATGTGC-----------------------CGCAATGCTC-AGTGGCAACATATTTGGG-AAC---------AAAAAATTTG------GCTGTG----CTCAGATATATGTACATGACAAGTGAGAGGGCAGGA--TTTTGGAAGCA-AAA-----ATAGGCGGCGA----CCGGGGT---GGGGGGCACACC----AAAAACTAGTA--
s cb4.chrX             9117942 261 + 21540570 ---agaagaaaatagaaaaaacaaagagaagATTGA-CAAAATTAAATTGCTGCGCCGTTATGTG---CGGTGGTGTTGTTTCTTTCTTCACTGG-------TTGACCCAAAAGGACATGTGCGA------------------------AAGCCCA-AATGGCAACATATTTTC----CCgtctaagaaaaaaatttg------cttgGGGTCTTTTGGATTTATGTACATGACAAGTGAGAGGGCAAGATATTTTGGAAGCA-AAACTAG-AAGGGTGGAGT----GAGGGAG---AGGGG---CACCGGaaaaaaaCTAG----
i cb4.chrX             I 1380 C 0
s caeRem4.Crem_Contig0 1026784 223 -  4500979 -----aaacagaaaaagaaaacaaaaagaagattga-caaaattaaaTTGTTGCG-CGTTATGTG---CGGTGGTGTCGTTTCTTTTT------------------ACTAGAAGGAGATGTGAGAT-------------------GTGCAATACCC-AGTGGCAACATattcca----c---------aaaaaattgg------CCGG------CCTGGATTTATGTACATGACAAGTGAGAGGGCAAGAT-TTTTGGAAGCA-AA------AAGGGAGACGA----CCGGGC------GGG---CACC-----AAAACTAG----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5996146 243 + 20921866 ---gcacggaaaaaaagaaaacaaagaggaGATTGACCAAAATTAAATTGTTGCG-CGTTTTGTG---GGGTGGTGTCGTTTCTTTT-------------------AGTGGAAGAAGATGTGAGAT-------------------GTGCAGTGCCCTAGTAGCAACATATTCTCG--CC---------GAAAAATTTG------GCGG------CCCGGATTTATGTACATGACAAGTGAAAGAGCAACAT-TTTTGGAAGGAGAAACCAATGGGGGCGACGAGACGTGGGGAG---GGGAG---CACC----AAAAACTAG----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2299989 227 +  4147112 ---gcaacaaaaaaagaaaaacaaagagaagatTGAGCAAAATTAAATTGTTGCG-CGTTATGTG---GGGTGGTGTCGTTTCTTTT-------------------AGTGGTAGAAGCTGTGAGAT-------------------GTGCAATGCCC-AGTGGCAACAtattctca---c---------aaaaaattta------gcgG------TCTGGATTTATGTACATGACAAGTGAGAgggcaacat-ttttggaagga-aaaccAACGGGGGCGACGA---------------GGGG---CACC-----AAAACTAG----
i caePb3.Scfld02_0     I 2 C 0
s caeJap4.Scaffold1521  108382 288 +   152914 gcgaaaaaaaaacacacagaGAAGAAAGAAGATTGC-TAAAATCAGATTGTGGCA-CTTTGTGCGGTCGGTCGGTGTCGTTTCTTTTTAGCGTGGAAGGAAAGGGGAAGAAGAAAAGATGTGTTATGTTATGTAAGGAAATGCCAGTGCGAAGCCC-AATGGCAACATATTCCCGGGGT---------GAAAAAATGGCGAAGCGCGG--------CGGATTTATGTACATGACAAGTGAGAGGGCAAGA--TTTCGGAAGGA-AAAGCAT-GGGGGTGGGGG----TGGAGGGCCACGGGG---CCCT-----AAAACTAG--TA
i caeJap4.Scaffold1521 C 0 I 297

a score=79431.000000
s ce10.chrX            3988954 331 + 17718866 CTAGCACCGCCATCAGCCTCGCCCTTTTTCAAACTTCCACGCCAACAACATTCCTT--C-CGTCTATTGCAATCTgccccccccccccccccccgcTTCTCGTCTTTTTCCCC------GTTTGTGCCACCAAGGTCTCTGTTGCCTCTGATTGTT--------GCGGTTTTTGCCTAATATGCGTGAACTGAACTGGCTGAGCCAATTTTCTCACGTGTCCCACTTTTCCCACCAGCCGCCTGTCACATATTCTGGAGGGTGTCCTCCCCCCTCCCTCTGCACTTGGGCCCC-GCGCATTGACGTCGGA-CTAATCA---TTTTCTCAGCTTGGTTTTTTTGTTTATGTCTC
s cb4.chrX             9118203 279 + 21540570 -TAGTACCCAAGCT-------CC----------TCTCTACACC-AAAACATTCCTTTCCTTGTCTATTGC--TGTCTCTT---------------CATTTTGTCGTCGCCAAT-------TTTGTTTC-CCATGGACTCTGTTGCCTCTGATTATtcgcgaaaaaaaa-gtttgtttaaTATGCGCGAACTGAGCCTCTTGAG-GTTTTTTCTCACGTGT------------GCTCCGGGCCCCGGA---ATTCTGAAGAGAGCTCTCCTTTTGT-----GCACTTTGTGGG--CTGGGTTGGCGTTGAAGCTAATCA---TCCTCTTGGTTTATTTTTG---gtgatgtttc
i cb4.chrX             C 0 I 938
s caeRem4.Crem_Contig0 1027007 281 -  4500979 -TAGCACCGCCATT-------TCACCCCAGAAGCCTCTACACCAAAAACATTCCTTTCC-CGTCTA------TGTGTCTC---------------CTTTGTgtcgtttttcgttttttcctttttttc-ccatgGTTTCTGTTGCCTCTGATTGTT--------GCAG-TTTTGTTTAATATGCGTGAACTGAACTACTTGAG-CCTTTTTCTCACGTGT------------GCTCTCCGTCCGCCAACGATTCTGAagactctttttctttcgt----gGCACTCGGTCGGCACAGCGTTGACGTCGAA-CTAATCA---TCTTCacggcttcttctt----------ttt-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5996389 272 + 20921866 -TAGCACCGCCATT-------TCCTCCCCCAAGCCTCTACGCCAAAAACATTCCTTTCC-CGTCTATTGCAATGTGTCTC---------------TTCTTCGTcgttttcctt------atttttttc-ccatGGTCTCTGTTGCCTCAGATTGTT--------GCAG-TTTCGCCTAATATGCGTGAACTGAACTGCTTGAGACTTTTTTCTCACGTGT------------GCCCGCCCCAATAGCAGGATTCAGGAGACCCTCCTCT-----------GCACTTGTTGCC--GGACATTGACGTTGAA-CAAATCA---TCTTTacagcttcttttttc------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2300216 255 +  4147112 -TAGCACCGCCATT-------TCCT-TCACAAGCCTCTACGCCAAAAACATTCCTTTTC-CGTCTATTGCAATGTGTCTC---------------CTCTTAgtcg------tt------atttttttc-ccatggTCTCTGTTGCCTCTGATTGTT--------GCAG-TTTTGCCTAATATGCGTGAACTGAACTGCTTGAG-CTTTTTTCTCACGTGT------------GCTCGTCGGA-------GATTCTGGAGACCCTCCTCT-----------GCACTTCTT------GACGCTGAAGTCGGA-Ctaatcatcttcttttcagcgcctttttg-------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  108670 297 +   152914 I

a score=12940.000000
s ce10.chrX            3989285 76 + 17718866 TTCAACGTGGTGTCGTGATGAGGTCTC-TTTGTTTCTCAATCAACGTGC-------------ATAAGGTCAGAAGATCGGAATTCCTTTT
s caeRem4.Crem_Contig0 1027288 74 -  4500979 ---------------ttgtgatgtttc-tttgtttctcaaTCAGCGTGCGAGAAGTGGTGGGTAGAGGTCAAAAGGTCAGAATTCACTTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 5996661 66 + 20921866 ------------------tgatgtttc-tttgttttctaattACTGTGGGAGCA-----TGTTTGGGGTCAAATggtctaaaatcatttt
i caeSp111.Scaffold630 C 0 I 249
s caePb3.Scfld02_0     2300471 61 +  4147112 ------------------tgatgtttcttttgtttctcaatcaGCGTGG-----------GTTAGAGGTCAAAAGGTCAGAATTCACTTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I

a score=-488.000000
s ce10.chrX            3989361 3 + 17718866 TTT-
s caeRem4.Crem_Contig0 1027362 3 -  4500979 GTT-
i caeRem4.Crem_Contig0 C 0 I 219
s caePb3.Scfld02_0     2300532 3 +  4147112 -TTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I
e caeSp111.Scaffold630 5996727 249 + 20921866 I

a score=3437.000000
s ce10.chrX            3989364 109 + 17718866 CTGAAAACCTATTGAATTCACATGCTTCTCCGCTTACCTTTTTCTCAAGGTTTTTAATAGTTTTTTGAATGTCAGACAGTCGT----TTTGCGAAAACAAT-CTTTAAAAGGCA
s caePb3.Scfld02_0     2300535 111 +  4147112 CTTAGAGTCTATCAAATTCTCATGCTTCTTCTTTTACCTTTCTCTCAAGG---GCGATGCGTCTTTAAAAGTTGAATTGTCTTTTAGTTTGGGTAAACAATActtttgaagata
i caePb3.Scfld02_0     C 0 I 624
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I
e caeSp111.Scaffold630 5996727 249 + 20921866 I
e caeRem4.Crem_Contig0 1027365 219 -  4500979 I

a score=0.000000
s ce10.chrX            3989473 979 + 17718866  
e caePb3.Scfld02_0     2300646 624 +  4147112 I
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I
e caeSp111.Scaffold630 5996727 249 + 20921866 I
e caeRem4.Crem_Contig0 1027365 219 -  4500979 I

a score=483.000000
s ce10.chrX            3990452 11 + 17718866 TCTTCCCGGTA
s caeSp111.Scaffold630 5996976 11 + 20921866 TCTTCGCGCTG
i caeSp111.Scaffold630 I 249 C 0
e caePb3.Scfld02_0     2300646 624 +  4147112 I
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I
e caeRem4.Crem_Contig0 1027365 219 -  4500979 I

a score=91.000000
s ce10.chrX            3990463 1 + 17718866 T
s caeRem4.Crem_Contig0 1027584 1 -  4500979 T
i caeRem4.Crem_Contig0 I 219 C 0
e caePb3.Scfld02_0     2300646 624 +  4147112 I
e caeJap4.Scaffold1521  108670 297 +   152914 I
e cb4.chrX             9118482 938 + 21540570 I
e caeSp111.Scaffold630 5996987 0 + 20921866 C

a score=1143.000000
s ce10.chrX            3990464 37 + 17718866 GAATATTAACGA--------GGCCGCATCTTCCATCA---TCTCCACA
s caeRem4.Crem_Contig0 1027585 34 -  4500979 GAATATTAATAA--------GACTTTGTT---CCCTC---TTCCATCA
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 5996987 45 + 20921866 GAATATTAACGAACTGCGCCAGTCTTGTTCTCCCCCC---TTCCTCCA
i caeSp111.Scaffold630 C 0 C 0
s caeJap4.Scaffold1521  108967 39 +   152914 GAATATTAACGA--------GCTCCCTGCTACCTTTCAAATTGCTCC-
i caeJap4.Scaffold1521 I 297 C 0
e caePb3.Scfld02_0     2300646 624 +  4147112 I
e cb4.chrX             9118482 938 + 21540570 I

a score=805.000000
s ce10.chrX            3990501 45 + 17718866 CCCCTGGTCCG--TTTCCATTGCTA---ACTGAACATCC---TTCATTCTACA--------------------
s caeRem4.Crem_Contig0 1027621 46 -  4500979 CCTCCGGTTCATATCTAtctttcttat-attgcacatct---ttcatt---ca--------------------
i caeRem4.Crem_Contig0 I 2 I 5
s caeSp111.Scaffold630 5997032 47 + 20921866 CCTTCAGTATGTATTGAgactcattttcattgcacatct---ttcatt---ca--------------------
i caeSp111.Scaffold630 C 0 I 4
s caePb3.Scfld02_0     2301270 48 +  4147112 CCTCCGGTATG--TCGCCCCTTCTTTTTATTGCAcatcttcattcatt---ca--------------------
i caePb3.Scfld02_0     I 624 I 4
s caeJap4.Scaffold1521  109006 42 +   152914 -------------------------CTCATTGCCCAtct---tccttt---cattttgttcttacgtcctacg
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9118482 938 + 21540570 I

a score=128101.000000
s ce10.chrX            3990546 464 + 17718866  
s cb4.chrX             9119420 484 + 21540570  
i cb4.chrX             I 938 C 0
s caeRem4.Crem_Contig0 1027672 468 -  4500979  
i caeRem4.Crem_Contig0 I 5 I 1
s caeSp111.Scaffold630 5997083 461 + 20921866  
i caeSp111.Scaffold630 I 4 I 12475
s caePb3.Scfld02_0     2301322 495 +  4147112  
i caePb3.Scfld02_0     I 4 C 0
s caeJap4.Scaffold1521  109048 555 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-19240.000000
s ce10.chrX            3991010 61 + 17718866 AGAGATACTGCTC--CCACTCAACCATATTTC------------TTTCTCT---------CCGATTTTGGAA------ACGAAATACAGA
s cb4.chrX             9119904 70 + 21540570 ------TCTTCTC--CGGTCCCGACatcttcctcatt-------tttatgtatcttt---tgaaatctgaaagtta--taaaaataCAGA
i cb4.chrX             C 0 I 31
s caeRem4.Crem_Contig0 1028141 77 -  4500979 ---tcctctcttc--caGT-CAGtcgttttttccctt-------tttggcTCCCACTCACTGAGTTTTGAATATGACTTCGAAATACAGA
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0     2301817 54 +  4147112 ---------------------AACCAATTCCTAGACTCAAAGTGTTTGAGT---------TAAACTCTGACT------TTCAAATACAGA
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109603 30 +   152914 ----cgtctacccgtccgtccgtccgtccacCCA--------------------------------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=3690.000000
s ce10.chrX            3991071 31 + 17718866 TCGTCCCGCACAGCCGGCATTTGTGATTCTT
s caeRem4.Crem_Contig0 1028218 26 -  4500979 TCG--TCGTTGAGC---CATTTGTGATTCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2301871 26 +  4147112 TCG--CCGCAGAGC---CATTTGTGATTCTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109633 27 +   152914 ----TCCGCCCATCCgcctctcgtttttttt
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9119974 31 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=40624.000000
s ce10.chrX            3991102 173 + 17718866 GCCTCCTTCACCC-----TTTCTTCTTC----TCCTCTCTGAATATTCAATTATGCATTTCTCG----------------TTCTTCGCTTCTGTC----TCTCCAGTACTTAGAAGAAAAAACGAAAAGAAAAGA-CAAAACTT---------GGTCAGCTTATGTTAATTGAGTAAGAAGTCGCTTCTCG--GATTGCTATGCGAACACATAC
s cb4.chrX             9120005 164 + 21540570 GAAtgctccttct-------------------ccttctttaaatattcaatta-----ttccca----------------tttttctcgtCTCTCTCCTCCtcagtcaatttttgggaaaacgcAGGAAAAAATA--AGAACTTGACGA-CGAGGTTAGCTTATGTTAATTGAGAAAGAAGTGGCTTTTCG--GATTGCTC-----ACGCATAT
i cb4.chrX             I 31 C 0
s caeRem4.Crem_Contig0 1028244 177 -  4500979 GCGTGCTTCTCCTGTCTTTTTCCACCTCCTTGtctcttctgaatattcaattatgcatttctcg----------------ttttttctgtCTCTC-CATCCTCTATcactt----ggaa--------aaaaaaga--aaagctt---gG-CGAGGTCAGCTTATGTTAATTGAGTATGAAGTGGCTTCTTG--GATTGCTTAGGGAACACATAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2301897 191 +  4147112 GCGTGCTTCTCCC----TTCTTTGCTCCTCAGCCTTCTCTGAATATTCAATTATGCATTTCTCGCTcctcgtat----ttttttttctgtctctccatttctctatcactt---aggaa-----aagaaaaaaga-cgaaactT---GG-CGAGGTCAGCTCATGTTAATTGAGTAAGAAGTGGCTTCTCA--GATTGCTCTAGGAACACATAT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  109660 174 +   152914 ----------------tttttttgcgt-----gcgCTTCTGAATATTCAATTATGCATTTCTCGCTTCTTGcgtttggtttttttcccgtttgCC-TATTTACAAGAACTA----GGATAAATAAGAGAACGAGAGGAAAAATT---GATCAAGGTCAGCTTATGTTAATTG-----------GCttcttgcttctttttttgcgaACACTTGC
i caeJap4.Scaffold1521 C 0 I 8079
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=4333.000000
s ce10.chrX            3991275 20 + 17718866 CCGACGAGGAGCTTCCTTGT
s cb4.chrX             9120169 20 + 21540570 TGAATGAGATCTCCTCTTGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1028421 20 -  4500979 TCGATGAGATTCTTCCGTAT
i caeRem4.Crem_Contig0 C 0 I 106
s caePb3.Scfld02_0     2302088 20 +  4147112 CTGATGAGATGCTTCCTCGT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=311.000000
s ce10.chrX            3991295 2 + 17718866 CT
s cb4.chrX             9120189 2 + 21540570 TT
i cb4.chrX             C 0 I 106
s caePb3.Scfld02_0     2302108 2 +  4147112 CT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=-31.000000
s ce10.chrX            3991297 1 + 17718866 G
s caePb3.Scfld02_0     2302110 1 +  4147112 A
i caePb3.Scfld02_0     C 0 I 99
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=0.000000
s ce10.chrX            3991298 86 + 17718866 AAGCTCCTCAGCATTCAAATAATTAAGCAAGAATTTGAAGGAACTTTGATGTTTCTAACGGAAACACCACATAACTAGCCAAACTG
e caePb3.Scfld02_0     2302111 99 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=-2442.000000
s ce10.chrX            3991384 507 + 17718866  
s caePb3.Scfld02_0     2302210 433 +  4147112  
i caePb3.Scfld02_0     I 99 I 50
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=0.000000
s ce10.chrX            3991891 77 + 17718866 AAAACTCGCAATTCCCACATTTGCCGTTTGCCGGAAAATATCGTTTGCCGCCCACCCCTGTCACAACCATCCGATTT
e caePb3.Scfld02_0     2302643 50 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=-15.000000
s ce10.chrX            3991968 105 + 17718866 AAAACTGAAGAACAATTGGTTTTAAATTACCCAATTCTTCAATGCCCTTTTTTCTTGCGTGACATGCCCAAATTTCACTTAATTCTCAATCTCATCACATCGAAT
s caePb3.Scfld02_0     2302693  88 +  4147112 AAATCTGAAGAACTTCTAATTCAAACACAGTAATTTCTCGTATACTTT-----------CAACACGCCAAA----CAATTAACTGAAAACTCCTTCAGAAAAA--
i caePb3.Scfld02_0     I 50 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1028441 106 -  4500979 I

a score=-3345.000000
s ce10.chrX            3992073 47 + 17718866 CCCGTTGTTCTTTCTCATC---GTACGTC----------TTGCAAAAACATTTACTCACA
s caeRem4.Crem_Contig0 1028547 60 -  4500979 CTCGTTTTTCTGTGCCGTCACACGAAATCCGAAGActacttgaaaaaaagtacAGGTAGA
i caeRem4.Crem_Contig0 I 106 I 1
s caePb3.Scfld02_0     2302781 15 +  4147112 -----------GTACAGCC---TAAAATC-------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120191 106 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=71040.000000
s ce10.chrX            3992120 617 + 17718866  
s cb4.chrX             9120297 653 + 21540570  
i cb4.chrX             I 106 C 0
s caeRem4.Crem_Contig0 1028608 612 -  4500979  
i caeRem4.Crem_Contig0 I 1 I 188
s caePb3.Scfld02_0     2302796 625 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=2782.000000
s ce10.chrX            3992737 15 + 17718866 GTATCAGGTAGATTT
s cb4.chrX             9120950 15 + 21540570 TAATCAGgtacattt
i cb4.chrX             C 0 I 777
s caePb3.Scfld02_0     2303421 15 +  4147112 CTATCAGGTACATTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1029220 188 -  4500979 I

a score=91.000000
s ce10.chrX            3992752 1 + 17718866 A
s caePb3.Scfld02_0     2303436 1 +  4147112 A
i caePb3.Scfld02_0     C 0 I 104
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120965 777 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1029220 188 -  4500979 I

a score=0.000000
s ce10.chrX            3992753 1041 + 17718866  
e caePb3.Scfld02_0     2303437  104 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120965  777 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1029220  188 -  4500979 I

a score=425.000000
s ce10.chrX            3993794 16 + 17718866 TGAAAAAGT--AAAAGtt
s caeRem4.Crem_Contig0 1029408 18 -  4500979 taaaaaagtgcagaaaat
i caeRem4.Crem_Contig0 I 188 C 0
e caePb3.Scfld02_0     2303437 104 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120965 777 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=7943.000000
s ce10.chrX            3993810 296 + 17718866 atttaaaaata------tataaaaattGAAAACATGTTTCAGTCAAAGATCTTG---TTCTAAATAACTGGTAG--G---CAATTTGTGTGAATGAAGCG-CTCCGGTGAATAGAAGTAGATTGAGACGCATTCATGATGCTCCAATTCAAAATGAAGAAGAAGAGCTCCTATTCTATTTTTCCTCTTTTCTTTTAT---------TCCCTCTTTT------------CCGTTTAGTTTGTCTATATGC---------TT---------------------------------------------TGAG----------CTAGtatttat-----------tattatttttttat-----------------------------------------------------aatttagaaaaata-attgtttaaaata---GATGACGAAAGCCGAATCACTTTTG
s caeRem4.Crem_Contig0 1029426 368 -  4500979 -----------------AGTAAAAGATCAGA---AATGCAGAATAGATCTTTCAACTTTCCG-AAAATTGGTGGGAGAGCCAATTTGAATAAACGAAGCA--CCCGGTGAATGGAAGTAGATTGAGACGTTTTCATGATGCTTcaattcaaattgaag----aaagctcactattcttattttcttttcttttttct---------tcgccttcttattctttttcaactgtt-cGCTTGCCCATTTGCACTTCTACATTGAAGAGCTCTCAAAATGAGTGCTCGacatttttccaagaaaaaagtgaattgtgagttttcggTTTTGATCTTTCTCGTCAgattatttttatc------------------------------------------------------attttccacTCGTTtgctcttgaaaa-----aaaaacggaaaacggGTCAATTCCG
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0     2303541 394 +  4147112 attcaaaaaagtgtggcaataaaagatcaaaaagaattccatttcaattttccaactctCTGAAAAAGTGGTGG--GAGCCGATTTGAATAAA-GAAATAGGTTCGGTGAATGGAAGTAGATTGAGACGCCTTCATGATGCTCCAATTCA------------AGAGAccttcattccttttttcttttcttttttctttcttctcatcgtttttttttcttatttcaactGTTCCGGTTACCCATTTGCACTTCTTCATT------------------------CACAT----------------TGAA----GAGCTCTCAGAATAAGT-----------GCTCAGCATTTTCTTGGAAAACGTGAAACTTCGACTCTGATCTTTCTGTTTTACTTTCTCATCTCCAATTTTGCACACACAGGATAGCAAAAATAACCAAAAGTGGGAAACGGGTCGATTCCG
i caePb3.Scfld02_0     I 104 I 1
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9120965 777 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=14312.000000
s ce10.chrX            3994106  84 + 17718866 TTTGGCAAGTGTTAAGGTCTCTGACGATTGAGTGGATTATGAGATTAATG--AATAATGAAAAAGTG---------CGGAGAGCAAGTTTTGATT---------------------
s cb4.chrX             9121742  93 + 21540570 TTTGGTAACTGCTAATCTTGGCCACGAATCAGTGGATTAAAAGATTAATA--ACGTTGAAAAAAGTGTCCAAATCCGTTAGAGCAAGTTTCAATT---------------------
i cb4.chrX             I 777 I 477
s caeRem4.Crem_Contig0 1029795  86 -  4500979 TTTGGTAACTGTTAATCTCGACTACGAATGAGTGGATTATGAGATtaataggaaaaataaaaatgtgtcGAAA---GCGAGTGCAAGTT---------------------------
i caeRem4.Crem_Contig0 I 1 I 4
s caePb3.Scfld02_0     2303936 101 +  4147112 TTTGGCAACTATTAATCTCGACTGTGA--GAGTGGATTATGAgattaata----gaaaaaaaatgtg---------gcaAGACcaagtttcagatttgaacttgcttctttttctc
i caePb3.Scfld02_0     I 1 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=-12421.000000
s ce10.chrX            3994190 327 + 17718866 AAAAAATAGTGAGTTAAATTAGTCCATATTTTACCATTGCG---------------------------TGATAGAGTTTCAT-TAATCTATAATTACGTT--GAGTT-------------------CTCAGTGTGTTTTTTTTAATTTTAGAGTCAAATGTCAATAAC----ATATTAT---TAACGCGCTTGCAAA----------GTAAGTTTGATT-----------------------------TCAAAC----------------------TTG--TAATTTATTTTTTCCAAACAA--------AATTGTTTATCGTTT--AATAATTT-----TAATTTCTCAAAATTGTCTTAA-CAACTAAACAAACAATTTA----------GAGTTC---AAAATGTTACCTCGAGCAAATACTTTTAGTTACTGTTTGATTTTAGCCCTTCACGTGAACAAACCCAATTCTTC
s caeRem4.Crem_Contig0 1029885 392 -  4500979 AGAGGACTCTTTTTTGTGATAGATTTTATTCAGATATTACATGGAACATAGACTCTTCTGCCCTCTTTTGACATCGCGTGACGTC--TTTTAATTATTTCAAGAGTT---------------------------AGATGTCTcagat--------aagaaaaaacaac-ttctTATGTGGTAAAATGAAGTTTCAAGAAACAGAAACTCAAATATTTTGGAAGAATTTGTTTCTGaacttcaaagtttccaaACGAGAATAACAAACAAGTTTCTTTTGCTCAATATAGTTG-TCAACATAA--------AAATAACTATCAGGTGAaatagtttcattttgaacttt----ctttctGCCC-Cagtagaaaaaaca---------------aagttcaCTAAAGTCTAGCTTCCG--AAACATTGT------CTATGTGATCCGTCACCACC----AAACAAAC----TTTTTC
i caeRem4.Crem_Contig0 I 4 I 73
s caePb3.Scfld02_0     2304037 363 +  4147112 agagaATATATTCTTAAAATCGTCCTTTTCTCAGCATCGCG---------------------------TGACGTTGTTTAAT-TA--TTTCACATAAGTTAGGAGTccaagataagaaaaaaacaactctgccagtatttttcagtt------tcaagaacCAGCAACATGCATATTTT---AAGTGAACTTTTCGG----------CTAACCATTTCA-----------------------------CAAAACAAATATAG--------------TTGCTCAATTCAGTcg---aacagaatttttttcaattatttttgagac--AGTAACTTGTTtatgaattccaaaatttgttgCCAGTAGTAACAAAGACAGATCAAATAAACCACGAGGAAACTAAAGTCTAGGTTCCG--AAAAACTTT------CTCTTTGGTCTGTCTCCTCCAT-TAAACAAAC----TTTG--
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9121835 477 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I

a score=-487.000000
s ce10.chrX            3994517 62 + 17718866 TTCCTAGT---------------------AACCGCGCAGTATTTACC--CATTTAAATAC--GACCT----ATCTTTCGTCGCTGCCAACA
s caePb3.Scfld02_0     2304400 83 +  4147112 TTCCTAGTCGGCGATAGGTTGATAATTGCAAACGCACA-CACTCACCCGCAAATAAATACGAGACCTTGTGATCTTTATT--CCGC-----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9121835 477 + 21540570 I
e caeSp111.Scaffold630 5997544 12475 + 20921866 I
e caeRem4.Crem_Contig0 1030277 73 -  4500979 I

a score=70498.000000
s ce10.chrX            3994579 90 + 17718866 CGCGTTCGTGGTGTAATGGTCGGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCCCCCCGAACGCATACATTTTTTTT
s cb4.chrX             9122312 85 + 21540570 cgCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGTTTCGATT-----CCCCCCGAAcgcagattttttttct
i cb4.chrX             I 477 I 598
s caeRem4.Crem_Contig0 1030350 85 -  4500979 CGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCgacgggggttcgatt-----ccccccgAACGCAGAACtttttttC
i caeRem4.Crem_Contig0 I 73 C 0
s caeSp111.Scaffold629 1609299 85 - 33334924 CGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATT-----CCCCCCGAACGCAGaaaattttgct
i caeSp111.Scaffold629 n 12475 C 0
s caePb3.Scfld02_0     2304483 85 +  4147112 CGcgttcgtggtgtaatggtcagcatggatgccttccaagcattcgacgggggttcgatt-----ccccccgaacgcagaattttttgtc
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I

a score=-10148.000000
s ce10.chrX            3994669 58 + 17718866 ------------------------TGATTTATTTAAA-GATCGTGTC------AGTTTAGAAAT----AGACTTTC-------TATTTTAAGTTTTAAGA
s caeRem4.Crem_Contig0 1030435 71 -  4500979 ---------------------CGTTCAGAGATCTTGATGAGCTTATCTAACTTGGTTCAGAAATAGAAAGACAACTATTTTGATATGCTAAG--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold629 1609384 65 - 33334924 tttttt---------tcaagtcaaTGGAATATTCGAA-ACGTTCTTCTCCa-----------------agaagttcatttt--tattttgaaga------
i caeSp111.Scaffold629 C 0 n 0
s caePb3.Scfld02_0     2304568 85 +  4147112 tttttttgaaatttctcatatCGAAGATCTATTAGGATGAGCTCATTTGTA--GGATCAAAAATAGACAGAAATAC-------TATTTCTGGTA------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9122397 598 + 21540570 I

a score=-1247.000000
s ce10.chrX            3994727 100 + 17718866 CTTCATAT-CTTGTGTATTTTTAGTTGCACCACCACTTGTTAATTCGAATAACTCCATAATTCATTCATATATATTCCACTACTCTTGTCCT-----------------AGTGCAATT
s caeRem4.Crem_Contig0 1030506  97 -  4500979 ---------TGTGTGTATTTTTAGTTGTTGCACC----TTTGATTCAAATAAgtc--tttttcattcattacATTCTCAATCTTCTTCGTCCCTCACGCCCCGGATG--AATGT----
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2304653  96 +  4147112 TGTTAAATGTGTAAGTATTTATAGAGA-------------TGattcgaatca-----ttttttaaacatttatTTCTCTTGCATATTCCTCTTTAACACACAGAATTTCAATGT----
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9122397 598 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=46950.000000
s ce10.chrX            3994827 371 + 17718866  
s cb4.chrX             9122995 452 + 21540570  
i cb4.chrX             I 598 C 0
s caeRem4.Crem_Contig0 1030603 405 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2304749 369 +  4147112  
i caePb3.Scfld02_0     C 0 I 787
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-2066.000000
s ce10.chrX            3995198  97 + 17718866 TCTCCGAAAATGAGCTTCA---------GCTACAATTTGAAACTTG-----------AGAAAACTAATACATACTTTCCATATCAAA-TTCAGGATGCA----ATTTTTTCCATGCAGAAGG--------------------------------------
s cb4.chrX             9123447 102 + 21540570 tcttgggaaa--ATAATAA---------GCAAGGAAGTGAAAAAAGTAATCGGAGATAGAAAATTTATTCATAAGTGTCAGATCAAATTT-----TGCC----GTTGGTGTCAAGTTGAAAG--------------------------------------
i cb4.chrX             C 0 I 55
s caeRem4.Crem_Contig0 1031008 143 -  4500979 actCAGAAAA-GAGCATAAAATGTTTTCGCGAGGAAGT---AATAGTAATCGGAG--AAGAAATTTATTCA-----GTCATATCAAA-TT-----TGCCTTGGGTAGGTGTCAAATAGAATGCGAATTTCGCCCTTCTCGATGGAGATTTCTGATATAAA
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2305118 787 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-1769.000000
s ce10.chrX            3995295  48 + 17718866 ACTCA--------------TTATTGGATTTACCACTTC-----------CTATTC----TATGACG----------------------------------TGCTTGTGTTC
s caeRem4.Crem_Contig0 1031151 111 -  4500979 ACTAGAGTTTTGctgtaatttctttttttttccatttctccatcTTTTGTTATTCCTCTCATGATGCGAATCATTTCATCTTCCCCACACTCAATTGCTCCGTTTTTCTGC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2305118 787 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9123549  55 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-593.000000
s ce10.chrX            3995343 8 + 17718866 TCATTTCA
s cb4.chrX             9123604 7 + 21540570 TCACGT-G
i cb4.chrX             I 55 C 0
s caeRem4.Crem_Contig0 1031262 6 -  4500979 tcata--a
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2305118 787 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I

a score=66243.000000
s ce10.chrX            3995351 615 + 17718866  
s cb4.chrX             9123611 664 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1031268 678 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2305905 689 +  4147112  
i caePb3.Scfld02_0     I 787 I 436
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-306.000000
s ce10.chrX            3995966 17 + 17718866 C-----ATCGTGTTCTGATTTT
s cb4.chrX             9124275  9 + 21540570 t-------------ttgactTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1031946 22 -  4500979 TGTGGGACTGAGTCTCGATTTT
i caeRem4.Crem_Contig0 C 0 I 487
e caePb3.Scfld02_0     2306594 436 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=91.000000
s ce10.chrX            3995983 1 + 17718866 T
s cb4.chrX             9124284 1 + 21540570 T
i cb4.chrX             C 0 I 302
e caePb3.Scfld02_0     2306594 436 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I
e caeRem4.Crem_Contig0 1031968 487 -  4500979 I

a score=0.000000
s ce10.chrX            3995984 1014 + 17718866  
e caePb3.Scfld02_0     2306594  436 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9124285  302 + 21540570 I
e caeSp111.Scaffold629 1609449    0 - 33334924 I
e caeRem4.Crem_Contig0 1031968  487 -  4500979 I

a score=156.000000
s ce10.chrX            3996998 63 + 17718866 TCTCTATTTCGCCATTCTTAAATGTTTATAAATCAGAAACTTGTCAAAATTTGCTGAAAACTA
s caePb3.Scfld02_0     2307030 57 +  4147112 TTCCTCTTTCACCA-----GAATAGAGACAAATCAAAGTATTGTTAAACGGC-CCGGGGGGAA
i caePb3.Scfld02_0     I 436 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9124285 302 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1031968 487 -  4500979 I

a score=873.000000
s ce10.chrX            3997061 3 + 17718866 GAG
s caeRem4.Crem_Contig0 1032455 3 -  4500979 GAG
i caeRem4.Crem_Contig0 I 487 C 0
s caePb3.Scfld02_0     2307087 3 +  4147112 GAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9124285 302 + 21540570 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I

a score=56201.000000
s ce10.chrX            3997064 520 + 17718866  
s cb4.chrX             9124587 540 + 21540570  
i cb4.chrX             I 302 C 0
s caeRem4.Crem_Contig0 1032458 514 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 60
s caePb3.Scfld02_0     2307090 442 +  4147112  
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-2923.000000
s ce10.chrX            3997584 22 + 17718866 CCGGTTATGTTTAATT---------GAATTT
s cb4.chrX             9125127 22 + 21540570 ---GGGAtgagggattactgtagat------
i cb4.chrX             C 0 I 124
s caePb3.Scfld02_0     2307532  5 +  4147112 -----------tgatt---------------
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1032972 60 -  4500979 I

a score=-1850.000000
s ce10.chrX            3997606 96 + 17718866 TTTACTTTTGGACTTCAGGTGGAGTTAGTTTAACAAAAATAAATAAAATGAAAAATCAGTAGGAAAAGGTTTTGAGATCTGTATTTGTTAGGGGAC
s caePb3.Scfld02_0     2307537 27 +  4147112 ---------------------------------caaaaa---atatcatga--------------------------------tTTGTACGAGAA-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9125149 124 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1032972 60 -  4500979 I

a score=-5557.000000
s ce10.chrX            3997702 132 + 17718866 -TTTTTGTGAAAAATCTAAGAAA----------------------TAGTTTGTAAAAGCATTCTTTCAGCAA--TTTCTGAAAGCTTCTTTTAA-ACT-----------------TGGAATTAAAAAAATTCTTTTGGCATTGGAATTTTAGTAAAATTTGTATACTCT-------TTGAAT
s cb4.chrX             9125273 164 + 21540570 -TtattgtaagagatatcagaaaattttaaactgaCAGGATATTTTTGGTATTAtaagga----------aa--tttttgatag-----ttgagtatttttcttttatccTTCGCGGGAAACAAGGAAATCGTCTCCAAATTAACAAAACGTCATAATAAAAGCTCGCCACACACGtgtaat
i cb4.chrX             I 124 C 0
s caePb3.Scfld02_0     2307564 102 +  4147112 TTTGGTATAAACCCGATTATGAA--------------------TGTAGGTTTTTCAAGCA----------AAAGTTTCCGattg-----ttcaa-att-------------------gaaacaggga-------tcagaaataa-----------aattagTAGTCGTT-------TGTAAT
i caePb3.Scfld02_0     C 0 I 25
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I
e caeRem4.Crem_Contig0 1032972  60 -  4500979 I

a score=-710.000000
s ce10.chrX            3997834 39 + 17718866 GAGGTTTTAATAACTTAAA--CATGTGAGTAA----CGTAttttg----
s cb4.chrX             9125437 49 + 21540570 ttgagctcaattatctcgagtcCTGTGAACGATAACTAAATTTTGtgaa
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0     2307666 25 +  4147112 I
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1032972 60 -  4500979 I

a score=-12747.000000
s ce10.chrX            3997873 229 + 17718866 ctaaaaaatagtggaatgggtcctaataattggatatacctgtaaaaaaagtataaaacttacaatttgttaaatgattttttcaattttgcaa------------agatTTCGAGAAACTATTTAGGTCACGCCTAATTTCTTT--------------TGAGTTTT-CCGGTAAATCCGAATTAATTTTTATGGTCACATTTAAAAAAGAAAATCTGAATTATTTGTGGACAA---------------------------ATTAA---CAAAATTTTATAACGTG
s cb4.chrX             9125486 237 + 21540570 ctaaaaaattat--------tagtGGTACTGTGatc------------------------aataatttattagttga------caactttgcGATAGCTTTCAAAGGAATCGGGA------TTATTGAGCTCGAC-GGTTTCACTATCAATTCCTGGTTTATGGCTCATCTGTCATCCCATATTA--CCTCATAATTACTGTAGTCGTAGAAAA--TGAATTTGACTTCTACAACTCCAAATAAAGCTCCATGGCCATATAATTgctttccaaattttataaCTCG
i cb4.chrX             C 0 I 45
s caePb3.Scfld02_0     2307691 117 +  4147112 caaaaaaa---------------aagtattttgatt----------------------------attagagagaaga------aaacttc----------------aaattttga------acttcgGTCTTGAc--gcttctttttcaa---------tatatcTT-TTTGTC------------------------------------------TGAATCACAC-----------------------------------ATTTCTTTC-----TCGATAA----
i caePb3.Scfld02_0     I 25 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I
e caeRem4.Crem_Contig0 1032972  60 -  4500979 I

a score=-237.000000
s ce10.chrX            3998102 37 + 17718866 TTTATTTTGTCGGGTACCCTTCA---TGAAATAAAAACAT
s caePb3.Scfld02_0     2307808 36 +  4147112 -CTATTTTCTCAATTGGACCTTAATTTCAAGTAA---TTT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e cb4.chrX             9125723 45 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1032972 60 -  4500979 I

a score=-2798.000000
s ce10.chrX            3998139 65 + 17718866 ACTAGTGAACATTTCAT------------GACTTGGAAAAAAAACCAAATTTCCCCTCAGCTTATTTACAAATCTGA
s cb4.chrX             9125768 70 + 21540570 ACTAGgcgtttttaaaaattttgttttggagCTCATAAAAGCAA-TGACCCTTCCATC------TACTGTAGTCtga
i cb4.chrX             I 45 I 18
s caePb3.Scfld02_0     2307844 51 +  4147112 ACGAAGAACCATTAAAA---------------TCAGAGAAG-----AACTTTATTTTC------TTAAAGAACCTTA
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1032972 60 -  4500979 I

a score=-11132.000000
s ce10.chrX            3998204 130 + 17718866 CGTCATCTTGAAATCGGAAGCCACTATTTTTAACTCTCGGAAACTAC--------------------------TTCCGCAGT-------------------------------------------------------------------TCCACTTTATTC-----------AAAAGA-------------AGAAAAGAGTCGAAAAGAAAGGCGGAACT--------------------AAAATCTGAATTCCAAAATAA----------------AGACCA
s cb4.chrX             9125856 258 + 21540570 aattaccggaaaaatggaa----------------ttttagATCCACATAATCGTTGGAGAGGACTTAAAACGCCCACGGGTTGAAATGTTTTTACTGAAAGAGAAACGAGAATTGGCTCTTTAAGTTTATGGGGTATACTGTGGCTCATC--TCTTTTTCTGAGATCCCATAAAAGACTTAGACGGCACCATAAGAGATTTATACCCAAATGGGGGacttattctttttcaaagttgggaaacttcaaatttggggaaaaaagaaaatc-------agaaaa
i cb4.chrX             I 18 C 0
s caeRem4.Crem_Contig0 1033032 128 -  4500979 CGTCATCTGCGAATTGGGGAC-----TCTTTC---CTTTCAATCCCCAT------------------------TTCCCCGGT-------------------------------------------------------------------TC--CCtccttttgg--------aaaaaa--------------------------accaaaagaaggaact--------------------aaatttcgaatttcaaatataACGTATATCTAgatgaagaaaa
i caeRem4.Crem_Contig0 I 60 C 0
s caePb3.Scfld02_0     2307895 143 +  4147112 CGTCATTCCCGaataaaaaacacatttttcta---cTTAAAGTTCAC--------------------------TTCCGCAGT-------------------------------------------------------------------TCCACCTTattcatg--------aaaaga----------aaaagaaaag------ctccaaagaaggaact--------------------gaattctgaatagaaaaataaacgTATATCAAGATAAAGCAAC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  109834 8079 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=43480.000000
s ce10.chrX            3998334 78 + 17718866 TTTA---------------TTTCAGCGAGGTCGAAAGTGCCAGTCAAGCCGATTTCTTCCGTATGTTGGACGACAAAATCAATAGGGTTGGT------T
s cb4.chrX             9126114 88 + 21540570 tgtttttt-----------tttcagtgaggTAGAAAGCGCGAGCCAGGCTGACTTCTTCCGTATGTTGGACGACAAGATCAACAGGGTAAGTTGCGGCC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1033160 90 -  4500979 ttttgatttatgtTCAACGTTTCAGCGAGGTCGAGAGTGCCAGCCAAGCCGACTTCTTCCGCATGTTGGACGACAAAATCAACCGGGTA---------C
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2308038 81 +  4147112 GTTCTATTTCT--------TTTCAGCGAGGTGGAGAGCGCCAGCCAGGCCGACTTCTTCCGTATGCTGGACGACAAAATCAACCGGGT----------C
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  117913 78 +   152914 TTTA---------------TTTCAGCGAAGTGGAAAGTGCAAGCCAGGCCGACTTTTTCCGCATGCTCGACGACAAAATCAATAGGGTAAGT------T
i caeJap4.Scaffold1521 I 8079 I 3291
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-6289.000000
s ce10.chrX            3998412 33 + 17718866 GGAAGTTTAAGCA----------------TTGAT--TGAA--------ATTGAACTTAA
s cb4.chrX             9126202 58 + 21540570 GGGATTTGTCGAAGATGATTTGCGTAGAATTGATATTCAATAATCATTATCAAATT-AA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1033250 42 -  4500979 GGAATTTGATAAA---------CGGA-----GATAACCGA-AACTAATATCGTATT--A
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2308119 35 +  4147112 AGAATTATGcgat------------------gat--tcaa-aatttttgtaaaac---a
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  117991 3291 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=56337.000000
s ce10.chrX            3998445 280 + 17718866 AATTTTC----AGGGAAAAGGCGGCGATTCTGACAGTGAAAACTGAC-------ACGT-----CGAAATTC-----------AGTGATATTC------CTAACAATTCGAGTGCTTCTGTATCATGTCCGGTTACAA---CATT---------CCATTTTTATGGAATGACTTCAAACATCCTGGTGGTTTTCTTTATCT----------TCTTCC-------------------TCTCTTGACCCTCTCTTT--------T-----AAAGT-----------------------------------------------TTGCCACT--------------------------------GTTCGTACCATATCCTATCATAATTACCATTTCCC----TTTTTTTTGCTTCTC-TGACGGTTTCGTAGTGCGGTTC---ACGACCAATCACTCT
s cb4.chrX             9126260 391 + 21540570 AACTTGA----AGGGAAAAGGTGGAGATTCCGA---TGAGGATTGAT-------GTGTACGGTGGAAC--------------AATTATGGTTTGGTATC---CTATTCGAGTGCTTCTGTATCATTTCCGGTTTCAA---CATTCCCCCTTTACCA-ACCAACGGAATGAATTC-AATATCCTGGT-GTCTAATTTCGCTTG-TATCTATTTTTCCATCCCATCCTTACATTTGTTGCCTTCCTCcatttcttcatttctctGAAACATTGTCaattcttctttatttttgtctccattattacaaaaaaaa----ccactgtcaCTTCTCCTGAATTTCTTCTCTCATTCCAAA----TGTTTTGCCTCCTCATATCCC--TTACCATTTCCG----CTTTTT-----------AACGGTTCTGTAGTGCGGTTCCCAGCGACCAATCGTCCT
i cb4.chrX             C 0 I 60
s caeRem4.Crem_Contig0 1033292 382 -  4500979 ATTGTAC----AGGGAAAAGGCGGCGAATCGGACTGTGAGGATTGATAA--TGCGTGTGGTGCGGAACGGT-----------GGTTTTGGTTTGATGTCTAACAATTCGAGTGCTTCTGTATCATTTCCGGTTTCAA---CATT---------CCA-ACATACGGAATGATTTC-AACATCCTGGT-GTCTTATTTCGCTTG-CGTTTTATCTTCC-------------------TTTCttcccccattttttgactttttt-----atatttaactTTGCCCCAAT----TCTCAATCCTTACAGAAACAGtcattcattttcactt-tcctcCTTCTTTGCCCCCattccagaatatttttttaccATATCCTATCATAATTaccatttcca----tttttt--gcttctt-caacGGTTTTGTAGTGCGGTTC---ACGACCAATCCATCT
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0     2308154 359 +  4147112 atTGTAATTTTAGGGCAAGGGTGGCGAGTCGGACAGCGAGAACTGAT-------ATGTAGGATCGGTGTGG-----------ATTGGTGTTCTGCTGTCTAACAATTCGAGTTCTTCTGTATCATTTCCGGTTTCAA---CATT---------CCA-ACATACGGAATGATTTC-AACATCCTGGT-gtcttttttcgct----------ttttca-------------------tCCTTTGGTCAATTTCTTCTTGTCATT-----AAAGTTTATTA-------------CCCCCATCCAGACAGAAACTGTCActtcttctcactt-tcctTCTATCCAATTCTCGTAT--------TTCTCCCCCATATCCTATCATAATTACCATTTCCAacactttttt--gcttctt-tgaCGGTTTTGTAGTGCGGTTC---ACGACCAATTCTTCT
i caePb3.Scfld02_0     C 0 I 1
s caeJap4.Scaffold1521  121282 350 +   152914 aattttc----agggTAAAGGTGGAGAATCTGACAGCGAAAACTGACACCTTAGACTTAGAATAGACCAGCTGCCACTTCGACATCCCTTTCTTGTACCCGACAACTCGAGTTATTCTTTATGAATTCCGGTTCTTAATTCATT---------CCAACCATGCGGAATATGTTC-TTCATCCTGGT-GTAC-CTTTCGCTTGCCACCCATCAATCC-------------------TTTTTTGCTCCCCACCCCATTCTCACT-----------------------------TTT----------------------Cccctattgttt-ttttttttgtcaatccACGCCC--------TCATTTTCCATATCCTGTCATAAGTACCATTTCGT----TCCCCC--GCTTCTTGTAACGGTTCCATAGTGCGGTTT---TCGACCAATCACACT
i caeJap4.Scaffold1521 I 3291 C 0
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-1611.000000
s ce10.chrX            3998725 72 + 17718866 TAAGTTACCTAT--TCTGTGTTCCTCCTACGTATTTTTTCTTGCAAAAACATTGTAGAACAATAACGACAGATT
s caeRem4.Crem_Contig0 1033675 62 -  4500979 TAGCTCTCTAAT--ACCAATTTCTTACTACG-----CCTATTGTAAAA----TTTATAAGAATGACAA-CGACC
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0     2308514 65 +  4147112 TAGTTCTTCAATTCACTGTGTTCAGGTTAAG-----TCTCTCCATAAC----TATAGAACAATACCGACCGACT
i caePb3.Scfld02_0     I 1 C 0
s caeJap4.Scaffold1521  121632 55 +   152914 -AGTTTCT------TCTGTGTTCCTTTCCTT-----CTTACTGTAAAA------TGAAATGACAACGATTGTT-
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9126651 60 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=757.000000
s ce10.chrX            3998797 4 + 17718866 GATT
s cb4.chrX             9126711 4 + 21540570 AATC
i cb4.chrX             I 60 C 0
s caeRem4.Crem_Contig0 1033737 4 -  4500979 GACT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2308579 3 +  4147112 -ACT
i caePb3.Scfld02_0     C 0 I 685
s caeJap4.Scaffold1521  121687 4 +   152914 AATG
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold629 1609449 0 - 33334924 I

a score=-10049.000000
s ce10.chrX            3998801 92 + 17718866 ACTTC-----------ACGGCTAATGGAAACACAAATTCAAACGTTTCCCATAT-TATAGATTAAATTTCAATTTTTTCCAAA------------CTTTGTTACTTATTTTTGATT
s cb4.chrX             9126715 57 + 21540570 TTTTC-----------ACGCCT---------AC-------AACgc--------------------------atatttggaaaa------aaaacgcataatttttttctctgaaat
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1033741 85 -  4500979 ACTCC-----------ACAGCT---------TCGAAATTAAACACAGCCAAC-------GAttaga----gattttttgaaaattacccGATGCTCACTGCTTTTTTGTATTCCAT
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold1521  121691 92 +   152914 CCTTCCTCTGATCGAAACCGCT---------TCCGAAAGAAACGTTTGTAATCTGTCCCTTTTAAAT---GATTTGTATTAAA---------TTTCTTTACTTTTTTGTGTTT---
i caeJap4.Scaffold1521 C 0 I 1409
e caePb3.Scfld02_0     2308582 685 +  4147112 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-10223.000000
s ce10.chrX            3998893 198 + 17718866 GACTGTGATACAGGTGAACATCCTTATGAGAAAATGAACTGGTGAG--ATCTTGTCAAAT-----------CAAATTTGTAACAGAGTATGTAAC-------------------------TTTAGAATTTT-------TGACTAGAAAC---ACTTTGTGCCC-------------------------CCCGATTTTTGTACTTACTGTCATT--------TCCTAG------------------CTTTCCCTCCAACGTTTTCAGGTCTCTCTTTCCGAATAAC----CCCCGTTCATC------------------G
s cb4.chrX             9126772 192 + 21540570 cattttt--------------cgttctctgg----gaaacaattat---ttttctggGATTCTCAAACCCCAACAATTT-----------------------------------------TCTAgattatc-------aaaaacaaaaccaaaCTTTGTGACCaaaaaaaCATGGAAAGCAAATTGAATCAAATTTACGTCTGTAATTTGGTTAACAGGTCTCGAGG--------------AAATTTT-----------TTCGTA-----CTTTTTCCTGGTAAC---------Gtcac-------------------c
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1033826 289 -  4500979 CCCTGTT------------ACCTTTGTCTAGAACTGAACGACTTAtagattttgtgaaatttctgaactctcaaattttgaatattgtcTTAAAAAATACTAGCAAAACTTCCCCACATCTCTAGAAAATTCTTCCCAAAGAGAAAAACCAAACTTTGCGACCAAATCAGC-------------CAAATTAAGTTTGTTTCCGTAATTTGGTTAACAGTTTTCTTAGCTCAGGCcattgacaaatttttcaaccagatgtttcta-----ttctttctaaatattatttatcCAGTCACCTCCTGATCCCTCCCttctc
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2308582 685 +  4147112 I
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=9266.000000
s ce10.chrX            3999091 231 + 17718866 AAAATATTTCGCTTTCACAGTTTT------CCACATTCC------CATTAGTCCCTC-----------TTTATTTTTATCTATGGATCGATATTACTATGATCAATTGT-----------------TCA-------TGTCAAATTTTTGTACTTGTCC------------------------TTTTTATTTTCTTTTTAAAAAATGTTTCCCTCACTTCTT-----------------TGAATATATATTTTT----------TCAACTGTTTCAAATTTATTCTCCTTTCTGTTTTCC---ACGTCCGAATAATGAAT-GTTTGGCAAATAT
s cb4.chrX             9126964 176 + 21540570 -----aatttttctctgc-ttctc------CCACATTCCttgcatcttttttttcc------------taaatttttatcTATGGATCGATGTTCATATGATCAATT-------------------TTC-------TGTCCCATTTT----CTTGTCCTTTCAACGAA-------------------------------------------------------------------------------------------------CCCTTCCATACACATTTTCTCTATCC---TTCTC---GTTTCAGAGTAATAAATATTTTGGCCAATAT
i cb4.chrX             C 0 I 3910
s caeRem4.Crem_Contig0 1034115 275 -  4500979 -----agtttctttttcc-ctCCCCAATCTCAACattccagtcatttttcactctcCCTCACTGATTGTATCTTCTTACTTATGGATCGATGTTCATATGATCAATTCTACCAAAAAACCCGATTATCC-------TGTCCCATTTT----CTTGTCC-CTCTACGAAGCAGTCcatttttcttgtcatttttttcttgtaaa---cGTTTCtaattt------------------gattgatttgtAATTT-----------CTTCCTTCCTCCCATCTCTTCCCTCTTC----TCCA---GTTTCTGAATAATAAAT-TTTCGGCAAATAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2309267 299 +  4147112 AAACCATTTCGCTTTTAT-GTTTG------TCACATTCCTCTCCCCCTCAATCCCTCATCCTTGATT-TCTGTCCCTTACTATGAATCGATGTTCATATGATCAATTCTCCCAG------------TTCTTCAACATGTCCCATTTT----CTTGTCC-CCCAACGAAGCAGTCCTTCTTTCTTGTCACTTTACTTTGTGAgt---cttctctccttttctcccCAATCCCGAATGAGTTATTTTGTAATGTTACTGAAATGATGACCGACTCCTAAGGTTTTCCCCTTTC----CCTACATTCTTctgaataataaa--ttttgGCAAATAT
i caePb3.Scfld02_0     I 685 C 0
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=832.000000
s ce10.chrX            3999322 19 + 17718866 -TATGTTGTATTGAGAATTT
s caeRem4.Crem_Contig0 1034390 20 -  4500979 GAATGTTCTCATTAGACTTT
i caeRem4.Crem_Contig0 C 0 I 1753
s caePb3.Scfld02_0     2309566 19 +  4147112 GAATGCgttcatcagaatt-
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=792.000000
s ce10.chrX            3999341 12 + 17718866 TCACACGATTTG
s caePb3.Scfld02_0     2309585 12 +  4147112 tcataCTATTTG
i caePb3.Scfld02_0     C 0 I 2962
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1034410 1753 -  4500979 I

a score=0.000000
s ce10.chrX            3999353 1277 + 17718866  
e caePb3.Scfld02_0     2309597 2962 +  4147112 I
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449    0 - 33334924 I
e caeRem4.Crem_Contig0 1034410 1753 -  4500979 I

a score=971.000000
s ce10.chrX            4000630 27 + 17718866 AATGTCATTTGTTTATTCAGTTTTACC
s caeRem4.Crem_Contig0 1036163 27 -  4500979 AATGACGTTTGTTTATTCATCACGCTC
i caeRem4.Crem_Contig0 I 1753 C 0
e caePb3.Scfld02_0     2309597 2962 +  4147112 I
e caeJap4.Scaffold1521  121783 1409 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=7528.000000
s ce10.chrX            4000657  92 + 17718866 CAAGGTGCAAAGGTTCCAAGTGTCGTGCG-----ACCTTTTGAAATATTCAGTTCCGGCCTGG------GTATCAATTTTCTAATTGCTACATCAAAAATTCC
s caeRem4.Crem_Contig0 1036190 103 -  4500979 GAAAGTGCAAAGATTGCAATATCCTCACATGAGAACCCTCTTAAATATTCAGTGTTCTCATGACAAAGAGTATCAATTTTCTAATTGCTTCATAACTCATTCC
i caeRem4.Crem_Contig0 C 0 I 410
s caeJap4.Scaffold1521  123192  97 +   152914 CAAAGTGCAAAGGGTCGAACCTAGAGCTG-----ATCTGATAGAATATTCAGGTGTTGC-TCACGAAGAGTGTCAATTTTCTAATTGCTTCATCGTCAATTCc
i caeJap4.Scaffold1521 I 1409 I 1594
e caePb3.Scfld02_0     2309597 2962 +  4147112 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=0.000000
s ce10.chrX            4000749 279 + 17718866 CCCACTGCGTGGCATTTGACAGAAATGGTCACATGTATTTGAACAGAAAAAACTGACGAATTCTCTTTGTTTGACCAACTAATGAAAACTCAATTTTTGCTCTTTTTCAAATAAAATCCGAATAAATCTTGGCGGCTCTTCATTCGTCAAATCAGTCGGATTCACATTGTGTAAACATCATTTTTCGATCATTGCATTCTCAAAGGCTCTCGATTTCTCCAACATGTTAATGTCAGAAACTAAGCCCTGAAATTCTGAGTTTGTGTGAGTTTTGTGTCA
e caePb3.Scfld02_0     2309597 2962 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I
e caeRem4.Crem_Contig0 1036293 410 -  4500979 I

a score=1150.000000
s ce10.chrX            4001028 1120 + 17718866  
s caeRem4.Crem_Contig0 1036703  859 -  4500979  
i caeRem4.Crem_Contig0 I 410 C 0
e caePb3.Scfld02_0     2309597 2962 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449    0 - 33334924 I

a score=5262.000000
s ce10.chrX            4002148 88 + 17718866 AGCTTTTTTTAAAACATGAAC-CGTGGTGAGTTTGAATATATTTTTTTAAGAAGCGTGACAGATTCAG-GCACA--ACTCACGTTGAGCCAC
s caeRem4.Crem_Contig0 1037562 76 -  4500979 ---GGTGTATAAATCATGAGCACG----GAGTT---ACGAA-TTTTTCAAGAAGCCTGAGAGATTCAGCTCCCA--ACTCACGTTCAAC---
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2312559 79 +  4147112 AGTCGTTTATAAAACATGAGC----------tt---acaaagtttttcaagGGGAATGACAGATTCAGCTCCCACTCCTCACGTTCAACGAC
i caePb3.Scfld02_0     I 2962 C 0
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e cb4.chrX             9127140 3910 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=23061.000000
s ce10.chrX            4002236 362 + 17718866  
s cb4.chrX             9131050 442 + 21540570  
i cb4.chrX             I 3910 C 0
s caeRem4.Crem_Contig0 1037638 418 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2312638 423 +  4147112  
i caePb3.Scfld02_0     C 0 I 453
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=1291.000000
s ce10.chrX            4002598 6 + 17718866 AGAGTG
s cb4.chrX             9131492 6 + 21540570 TGAGTG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038056 6 -  4500979 AGAGTG
i caeRem4.Crem_Contig0 C 0 I 288
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I

a score=143.000000
s ce10.chrX            4002604 10 + 17718866 GCGCAAATTG
s cb4.chrX             9131498 10 + 21540570 GTTTTGATTG
i cb4.chrX             C 0 I 288
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1038062 288 -  4500979 I

a score=0.000000
s ce10.chrX            4002614 947 + 17718866  
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e cb4.chrX             9131508 288 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I
e caeRem4.Crem_Contig0 1038062 288 -  4500979 I

a score=160.000000
s ce10.chrX            4003561 3 + 17718866 AGC
s cb4.chrX             9131796 3 + 21540570 AAC
i cb4.chrX             I 288 C 0
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I
e caeRem4.Crem_Contig0 1038062 288 -  4500979 I

a score=-31.000000
s ce10.chrX            4003564 1 + 17718866 -C
s cb4.chrX             9131799 1 + 21540570 -T
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038350 2 -  4500979 CT
i caeRem4.Crem_Contig0 I 288 C 0
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeJap4.Scaffold1521  123289 1594 +   152914 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I

a score=1473.000000
s ce10.chrX            4003565 11 + 17718866 TAGAGTTTGAA
s cb4.chrX             9131800 11 + 21540570 TGGAACTGGAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038352 11 -  4500979 TGGATTTGATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold1521  124883 11 +   152914 TAGAACTTGAA
i caeJap4.Scaffold1521 I 1594 C 0
e caePb3.Scfld02_0     2313061 453 +  4147112 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=31400.000000
s ce10.chrX            4003576 136 + 17718866 GACGTCCAGTGTCATATATGTTTTCAAGTCAATCATGAGCCAGTCACTTTTCTCACCTGTAAGCACAGTATTTGTGCCGGATGTGCAGGTCGTTGGCTATCATCGTGTAGTGTCTGCCCAATGG-----------TAATT----TGGTGAT
s cb4.chrX             9131811 135 + 21540570 GATGTGAAGTGCAATGTATGCTTTCATGTCAACCGCGAACCATTCATTTTTGTTCGCTGCGGCCACACAATTTGCGCTGGCTGTGGTGGACGTTGGCTTGCCAGCTGTACTTATTGCCCAATGG-----------TAAC-----CGAAAAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038363 140 -  4500979 GACGTCCAATGTCACGTCTGCTTCCACGTCAACACGGACCCAGTCATCTTTGTGAAGTGCAAACATTCTCTCTGTGGAGGATGCGCCGGTCGCTGGCTCGCAAGTACCAGCGTCTGTCCAATGG-----------TAATTTTCACAATGTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2313514 133 +  4147112 GATCTTCGCTGCCATGTGTGCTTCTACGTCAACTCGGAACCGTACGTGATGCTGAAGTGCCGACATACTATCTGTGCTGGATGTGTCGGTCGCTGGTTCTTGAGAAAGACAAGCTGTGTGATGG-----------TA-------TAACAAT
i caePb3.Scfld02_0     I 453 C 0
s caeJap4.Scaffold1521  124894 147 +   152914 GACGTAACGTgtaatatttgtttttacgTGAATCAGGAGCCGTTCAAATTTGGGCCATGCAGACATACCTTGTGTGCCGGATGTTCCAGTCGTTGGTTAGGAACGTCTCCTGACTGTCCTATGgtgagaaaattttaatt----tgttgat
i caeJap4.Scaffold1521 C 0 I 23
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-5315.000000
s ce10.chrX            4003712 30 + 17718866 TCA-----TGGAACTTTGAA-------AAAAACTTAAAATAA
s cb4.chrX             9131946 29 + 21540570 TCT--------AGAATTGAAGCTGTTCAAA-----TAGATGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038503 22 -  4500979 TTT--------ATCACTAAA-------ATG-----CAAAACA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2313647 30 +  4147112 TTTGAACACAGATTAATGAC-------AAT-----TATATAG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  125041 23 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=22041.000000
s ce10.chrX            4003742 87 + 17718866 TTTTAGTGCCGAACGCGGGTGAGGGAAATTCATTTGAATGATGATTTGAAAAAGAAGTCATTGGAGTTTTTGAAGCTTCATCCAGGT
s cb4.chrX             9131975 87 + 21540570 TTCCAGTGTCGAACTCAAGTGAAGGAGGTCGAGATTCATCACGAAATGAAAGCAAAGGCGGAGGAATATTTGAGACGTCATCCaggt
i cb4.chrX             C 0 I 397
s caeRem4.Crem_Contig0 1038525 87 -  4500979 TTTCAGTGTCGCGCTCAAGTTGAGGAGATTGAGCCAGATCAGGAGTTGAAGTTGAGAGCTGACAGATTCCTCCTTCGTCATCCAGgt
i caeRem4.Crem_Contig0 C 0 I 13
s caePb3.Scfld02_0     2313677 87 +  4147112 TTTCAGTGCCGTACAAAGATCGAGGAACTCGAAATCGACGAGGAGCTTAAAGCCAAGGCTTTGGAACATCTCCAAGAAAATCCAGGT
i caePb3.Scfld02_0     C 0 I 10
s caeJap4.Scaffold1521  125064 87 +   152914 tttcagtGCCGAAGACCTGTGGAATATATCGAGATGGACGAAGAGCTTCAAAGAAAAGCGGCCGAGTTCTTGAAATGTCATCCTGGT
i caeJap4.Scaffold1521 I 23 C 0
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-4284.000000
s ce10.chrX            4003829 19 + 17718866 ------TTGTAGAT-------GAGTATCACTG
s caeRem4.Crem_Contig0 1038625 26 -  4500979 ------tttgagataaaaacagatttttataA
i caeRem4.Crem_Contig0 I 13 C 0
s caePb3.Scfld02_0     2313774 16 +  4147112 -------TTGTGAT---------TCTGTACAG
i caePb3.Scfld02_0     I 10 C 0
s caeJap4.Scaffold1521  125151 19 +   152914 ATTTAGTTagacat-------aattt------
i caeJap4.Scaffold1521 C 0 I 37
e cb4.chrX             9132062 397 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-2284.000000
s ce10.chrX            4003848 23 + 17718866 AATC----------CTAGCCTTTAAAAAATTAT-
s caeRem4.Crem_Contig0 1038651 30 -  4500979 CATC---CCCTGAGTTggttttggaaatgtttt-
i caeRem4.Crem_Contig0 C 0 I 1
s caePb3.Scfld02_0     2313790 34 +  4147112 AATCAAGCAGTGAACTGAGAATCAAGATAAATAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  125170 37 +   152914 I
e cb4.chrX             9132062 397 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=192.000000
s ce10.chrX            4003871  2 + 17718866 ----------TT
s cb4.chrX             9132459  2 + 21540570 ----------TT
i cb4.chrX             I 397 C 0
s caeRem4.Crem_Contig0 1038682  2 -  4500979 ----------tt
i caeRem4.Crem_Contig0 I 1 C 0
s caePb3.Scfld02_0     2313824 12 +  4147112 TTCTTCTATATT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  125170 37 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=11835.000000
s ce10.chrX            4003873 204 + 17718866 CTCCAGAACAAGAACTTCCGGAAGATATAAAGTGGGAGCAGTGTTGTCATGAAACAGTTTTTTGGTCTCTTCAACAACGGAAACGAGCAAACGAGTCTGATGCAGTATTTTATGGTTCTCAGCCAGT---TGTACCGGAGCATCTCAGGTGTCAACGTCACTAATTTTCTTATTT-------------ACCTTTATTAGTT-------TTC--CTTTAGCGCAGAAGAA
s cb4.chrX             9132461 200 + 21540570 TTGCAGAGCAAGAATCGCAGCACGACATTCGTTACGAACAGAACATGCATGAGATGGTCTTCTGGTCCATTCAACAACGCAAGCAGCCAGGAGACGAAGACGTCGTGTTCTTCGGGCCACAACCAAT---CATGCCACCACacttttggta---------ttttttctgtaattt-------------ttcataaccaatatgttc--att--tttcagcccaGCGGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038684 204 -  4500979 tttcagagaatcgcTCTCCACACGACATCTACTACGAGCAAACTGTGAACGAGACTGTGTTCTGGTCAATCCAACAACGCAAAAAAGCAGGAGATTCGGACAGAGTCTTCTATGGAATGAAACCATC---GGTACCAGAGAA--------------------TATGACGTAagtcaaaaaccgaaaaaaaaacaatcagcAAGTTCTAAAT--TTACAGTGAGGAAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2313836 202 +  4147112 CTTTAGACAAGGCAACACCTGCCGAGATCAAGTACGAGCAGTTGGCCTACGAGACAATTTTCTGGGCAATCCAGATGCGAAAACTTGCTGACGATCCGGATTTGATTTTCTACGGACCAAAACCAACCAACATCCTGGAAAGTTACAGGTAGCAAAGt-gtttccttttcaattt-----------------taattcaga-------tat--tttcagcGCCAAGGAA
i caePb3.Scfld02_0     C 0 I 117
s caeJap4.Scaffold1521  125207 196 +   152914 TTTTAGAGTCAGAAATACCGAGTGACATTAAATGGAAACAAAACTGCTATGAAACTGTATTCTGGGCAATTCAGCAGAGAAGTTTGGCTTCCGATCAAGGAGCTGTGTTTTTCGGGCGGAAACCGCA---AATTCCAAAGCATTTGAAGTGAGTACCA----------ATAATTT-------------AAAtcaattcaaa-------tttcattttagtgaaaaaggg
i caeJap4.Scaffold1521 I 37 C 0
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=6518.000000
s ce10.chrX            4004077 83 + 17718866 TCAAATGATTTCATTGAAACAAAAAGA---CTGGAAAACATTCGAATACGACTTGATGTCCTTACGAAACAAGTTGCCGAGCAAAC
s cb4.chrX             9132661 83 + 21540570 GCCGCCGACTACTACGAATCGGTTCGA---ATTCACAACATCCGGCAGCGTCTCGACGTGCTCAGAGATCGAATCGGTGAGCAGAC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038888 83 -  4500979 GCCGAGGAGTTCCTGGA---GGCTCGACGTATCGAGAGTGTTCGTAAACGTCTCGACGAGCTCAATGATCGTATCGCCATTCAGAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold1521  125403 83 +   152914 caaaaagAATTCCTCCAAAGTGTTAGA---GCGGAAAATATTTGGAAACGTCTTGAGGTTTTGAAATCACGGATTGGCGAGCAGAC
i caeJap4.Scaffold1521 C 0 I 272
e caePb3.Scfld02_0     2314038 117 +  4147112 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-2509.000000
s ce10.chrX            4004160 92 + 17718866 TCCACGCGTACAACAATACTACAATGTTGGTTAGTTAATTTCTTGAGTTTAGAAAAAAAAAACAAAAAGTTATAGTTTTTGTTTTAGAGAAA
s cb4.chrX             9132744 34 + 21540570 CACACTTGTCCAGCAGCAGTATCGCG----------------------------------------------------------AAGAAATG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1038971 34 -  4500979 TCCACTTGTTCAAGCTCAATACAGAG----------------------------------------------------------AGGAATTA
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2314038 117 +  4147112 I
e caeJap4.Scaffold1521  125486 272 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=2938.000000
s ce10.chrX            4004252 39 + 17718866 TTTAATCAATTGTTTTATCAAAACGAAATTAGCTATCGC
s cb4.chrX             9132778 39 + 21540570 TTCAATCGTATGTTCTATCAGAACGAAGTCTCTTACAGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1039005 39 -  4500979 TTTGTTCATCTCTCGAACAAAAACGACGCTACGTTCAGA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2314155 39 +  4147112 TTTGAAAAGATGTTCTACGACAATGATCCAATCTATCGC
i caePb3.Scfld02_0     I 117 C 0
e caeJap4.Scaffold1521  125486 272 +   152914 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=29569.000000
s ce10.chrX            4004291 61 + 17718866 GACGAAGATCAAGAATGGCGGATGGTTCACGGACGCGGGTTAATTAGAATTCCACGTAAGT
s cb4.chrX             9132817 61 + 21540570 GACGAAGACCACGAGTGGCAAATGATCCACGGACGTGGATTGGTCCGTGTCCCACGTGAGT
i cb4.chrX             C 0 I 79
s caeRem4.Crem_Contig0 1039044 61 -  4500979 TATGAGGATTATGAGTGGCAGATGGTCAACGGTCGCGGTTTGATTCGTGTGCCACGTAAGT
i caeRem4.Crem_Contig0 C 0 I 99
s caePb3.Scfld02_0     2314194 61 +  4147112 GACGAAGACCAGGAGTGGCGTATGGTCCATGGACGTGGATTAGTCCGTGTTCCACgtgagt
i caePb3.Scfld02_0     C 0 I 34
s caeJap4.Scaffold1521  125758 61 +   152914 GAGGAAGTTCAAGAATGGAGAATCGTTCCGGGAAGAGGATTGCTTCGTGTTCATCGTAGGT
i caeJap4.Scaffold1521 I 272 C 0
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=174.000000
s ce10.chrX            4004352 21 + 17718866 TTGCAAATTCAGCAGATCAAG
s caeJap4.Scaffold1521  125819 20 +   152914 TC-CAATTTTATTCAATTAAG
i caeJap4.Scaffold1521 C 0 I 15
e caePb3.Scfld02_0     2314255 34 +  4147112 I
e cb4.chrX             9132878 79 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I
e caeRem4.Crem_Contig0 1039105 99 -  4500979 I

a score=0.000000
s ce10.chrX            4004373 606 + 17718866  
e caePb3.Scfld02_0     2314255  34 +  4147112 I
e caeJap4.Scaffold1521  125839  15 +   152914 I
e cb4.chrX             9132878  79 + 21540570 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I
e caeRem4.Crem_Contig0 1039105  99 -  4500979 I

a score=100.000000
s ce10.chrX            4004979 1 + 17718866 G
s caeJap4.Scaffold1521  125854 1 +   152914 G
i caeJap4.Scaffold1521 I 15 C 0
e caePb3.Scfld02_0     2314255 34 +  4147112 I
e cb4.chrX             9132878 79 + 21540570 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I
e caeRem4.Crem_Contig0 1039105 99 -  4500979 I

a score=278.000000
s ce10.chrX            4004980 3 + 17718866 TTA
s caePb3.Scfld02_0     2314289 3 +  4147112 ttt
i caePb3.Scfld02_0     I 34 C 0
s caeJap4.Scaffold1521  125855 3 +   152914 TTC
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9132878 79 + 21540570 I
e caeSp111.Scaffold629 1609449 0 - 33334924 I
e caeRem4.Crem_Contig0 1039105 99 -  4500979 I

a score=35138.000000
s ce10.chrX            4004983 64 + 17718866 TTGCAGGATCAACAAATCGTCACTATTGCCCATTGCGTTTCCGCCGTTCGCACAGCAGTTAGTT
s cb4.chrX             9132957 64 + 21540570 TTTCAGGTTCGACCAACCGAAACTATTGTCCACTCCGCTTCCGTCGGTCCCACAGCAGCTAAAT
i cb4.chrX             I 79 C 0
s caeRem4.Crem_Contig0 1039204 64 -  4500979 tttcaggttcaaCCAATCGCTTCTACTGTCCACTCCGTTTCCGTCGCGCACACAGCACCTAAAT
i caeRem4.Crem_Contig0 I 99 C 0
s caePb3.Scfld02_0     2314292 64 +  4147112 tttaaggaTCTACCAACCGCAACTACTGTCCGATCCGCTTCCGTCGCTCCCACAGCACCTAATT
i caePb3.Scfld02_0     C 0 I 465
s caeJap4.Scaffold1521  125858 64 +   152914 TTTCAGGCCCGACGAATCGTTATCACTGCCCGCTCCGCTTCCGCCGCTCCCATAGCAGCTAAAC
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=-11755.000000
s ce10.chrX            4005047  60 + 17718866 AACACACGG--------------AATTTTCCGGTTTTC---AAATGTACATGTTG-----------------CCATTCCTAAAAATCGT------------ATTTT
s cb4.chrX             9133021 100 + 21540570 --TACTCGGCCCTAACTTGAAATTCTCTCCCGGTTCTCTGTATAATTCCCGATTGCTTCTCATCTCTTCTC-ATGTCTCCTGAAAACAATTT-GATACG--ATTCT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1039268 103 -  4500979 ACTTCTTGTCACCCATTCATACAGATCTCCCggttttccctcatttcccacgtagttttcctttttctctctctctctctttaacTTGTCct-aataca--ttttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold1521  125922  71 +   152914 -------------GAAAAATGGAGTCGATAAAGTTCTC----ATTTTGGAAATA------------------TTGTACATACAACGCGTTTTAAATAcagtatttt
i caeJap4.Scaffold1521 C 0 I 791
e caePb3.Scfld02_0     2314356 465 +  4147112 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-4223.000000
s ce10.chrX            4005107 102 + 17718866 TTATGTGACATTTTTTC----------------CCGGATATTTTCAAATTTCCTTTTTTTTAACCT--AATTCATCTTTTTTCTTTT-----------------TCTCCAATATATATATTTTTTTAATGAATTCCA--------
s cb4.chrX             9133121 116 + 21540570 TGCTGTGAAATTCTTTTCTCATTCCTATTGTTTACTGAAATCCCAGAAA-----TctaaatattttaaaatccaCAATTTACTCTTTGAATCgcaaaa-----------aataaacatataTT-----TGGATTCCG--------
i cb4.chrX             C 0 I 52
s caeRem4.Crem_Contig0 1039371 111 -  4500979 tcctgtg--------------------------acgaaaatcttaaaaatgaCTTCTGACTGATCTCCATCCCATCTTTTATTGCTTGAAT---AAAGTCTATCGCTTCAATTGATGTCTTTC-----AAGTGTCTGAAGGATAC
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2314356 465 +  4147112 I
e caeJap4.Scaffold1521  125993 791 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-550.000000
s ce10.chrX            4005209 37 + 17718866 AGATTCTC-----ATGTCAGT-----------GCGAGGGCCGAGCAAAATATT
s caeRem4.Crem_Contig0 1039482 50 -  4500979 ACATTATCGGTTTATGTCGTTTCATTTTCCTAGTGGTGGCCGCG---GATGCG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2314356 465 +  4147112 I
e caeJap4.Scaffold1521  125993 791 +   152914 I
e cb4.chrX             9133237 52 + 21540570 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=297.000000
s ce10.chrX            4005246 147 + 17718866 CTAGGCCA-GCGGTGGTGTAGTCCTCTCGGAATTGTAA---TTCGGATTCAAC-----TTCAGCTTTTTGACATT-------AAAATGCTTCATTTCTCAGA--------CTTATTGAAATTTATT-TGTGAAAAAGTGTAAAGCACTACCTACTGGTAATGGGGAG---TCGAA
s cb4.chrX             9133289 158 + 21540570 CTAGTCCGCGCGGCCGTGTACTACTCGTGAAGAAgaacaatttttccaataataacaatacatattttatacatttttacGGGAAAAGTTGCATTT--------------TTTGAGGAGAAATGAAGACTTAAAATATTTCACGCATTGATGACCAATTTTCGAGGA---TCCGG
i cb4.chrX             I 52 C 0
s caeRem4.Crem_Contig0 1039532 165 -  4500979 CTAGGCCAGGaggtcgtgtagtcctctcggaatTGCcc---ttttcatttaatttttttcctaaCTTTACacgattttctggaaaaaacggaatttc---gattgaaaactttgttgaaaattgaa-actaaaaa---ttaacgcGTCGCTGCCcgagaattgaaaactgcCCGG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2314356 465 +  4147112 I
e caeJap4.Scaffold1521  125993 791 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=4767.000000
s ce10.chrX            4005393 282 + 17718866 GAAATAT---TCGAAAAGTCGA---TGAGGTGTGAAATTGACGTC-AAGGGGCAGTCTCCACAGGATATGTGCTTCGCTTGA---CACACCTTTGGCAAAC--------TTCACAACAAGCAAGATATTCAGTCAGTTGGT--CATAGAGCTTCTCTTGGGAGCCGTTTGCCACAATAGTCCTGAGATTTTCAGCAATGTCACGGGTGAGCTTTTGTATTTTTCCCTTTTTTTTTTGGTTTTAAACGAAGCCAATTTGATCCAACAT-ATGAACATCATCA------TGGGAATATTTTCAGCTAATGA
s cb4.chrX             9133447 252 + 21540570 ----GGTACGTTACAAAACGAAT--TCAAGTGTGAAATTGACGTCAATTATGGACCCTGCACCGGATGTGTGGTTCGTCGAGCTCCAAAACCTTTGAGTAC----------------AGCTCAAAACTTCAGTCAGTCGCT--ACTTCTGAATCTTTGGCGCGTCGTCTTCCGCAATTTCCtcgacattttcgaaaatggcacgggtaa------ttatttttttttcctctctt--gAACACAACAAAGCCAA------------T-CACAAAGCT-----------AATCATTTGAA-TGCTGacaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1039697 253 -  4500979 ----TGT---TTTGGGAATCAAC--TGAAGTGTGAAATGGACGTC-ATTATGGATTTCAAACCGGATTTGAGCTTCATCGAG---CAAGACTTTAAAGGAATCGAAGCAATGTTGAGAGCTC--ATTTTCTGCCAGAAGTTACACCGCTTACTTTTCAAACCGTCTTCTACTTCAG--CCTTCGA-ACATCCAGAAATGTCACGGGTAA-----GCTATTTC--------------------CGACAAAGCTAA-----Tacagttt-cgaaaagttatAA------CAGGAAATTAGC-AGTTAATGT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2314821 279 +  4147112 --GAAAT---GTATGAAATGAGCGTTGAAGTGTGAAATTGACGTC-AGGATGCATTTCACACCGGATATGAGCTTCGTTGAG---CACACCTTCAACGGTT-----GGGGCGACAAGAAGTTAGTAGTTCAGTCAGTCGCT--GCTCCAACCTTTCCTCCGAATCGTCCTTCGCAGTTCTCTGGAGAAATTCAGCAATGTCACGGGTCAG-TTTGGTAATCTTTTTTCCT------------CAACAAAGCCAATTT-ATACAATTTACACAAACACATAAGCGAAGCAGTAATAAAGCATGCTAATCA
i caePb3.Scfld02_0     I 465 C 0
e caeJap4.Scaffold1521  125993 791 +   152914 I
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=114100.000000
s ce10.chrX            4005675 174 + 17718866 TTTTATTTACAGAGAACAGAGTACGATGATCCTATTGAGATTGTGCGAATGGCACGGCTCGCCGTCAAGGAAGCTAATATGCGAGCAGCCCGAATGCAGGGACAAACTACTCAACAGCTGATGCAAAGAGTTAAGGACTTGAAATATTGGAGTGGTGAAATTGATAGGTACATT---
s cb4.chrX             9133699 169 + 21540570 -tatattttcagagaactgAGTACGATGATCCAATTGAGATCGTGCGAATGGCTCGTCTCGCAGTCAAGGAAGCCAACATGCGAGCGACAAGAATGCAGGGACAGACTACCCAGCAGTTGATGCAACGAGTGAAAGATTTGAAATATTGGAGCGGAGAAATTGATAGGTT-------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1039950 169 -  4500979 -TCAATTTTAAGAGAACAGAGTATGATGATCCGATTGAAATTGTGCGAATGGCTCGACTCGCAGTCAAGGAAGCCAATATGCGAGCAACAAGAATGCAGGGTCAAACAACCCAACAGTTGATGCAAAGAGTGAAAGATTTGAAGTATTGGAGTGGAGAAATCGATAGGTC-------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2315100 173 +  4147112 -TAAATATTCAGAGAACAGAGTATGATGATCCCATCGAAATCGTGCGAATGGCACGTCTTGCAGTCAAGGAAGCTAATATGCGAGCAACGCGGATGCAGGGACAAACCACCCAACAGTTGATGCAAAGAGTGAAAGATTTGAAATACTGGAGTGGAGAAATCGATCGGTTCGTT---
i caePb3.Scfld02_0     C 0 I 41
s caeJap4.Scaffold1521  126784 173 +   152914 TTATATTTTGAGAGAACGGAGTACGATGATCCGATTGAAATTGTGCGCATGGCACGACTTGCCGTTAAGGAGGCGAATATGCGAGCCACTCGGATGCAGGGACAAACGACTCAACAGTTGTTGCAAAGAGTGAAAGATCTCAAGTATTGGAGTGGAGAGATTGATAGGTA----ATA
i caeJap4.Scaffold1521 I 791 C 0
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=-7557.000000
s ce10.chrX            4005849 36 + 17718866 CAGCGTGGTATATGCCAAGTTCTAGTTTAATT-----------ATAC-----
s cb4.chrX             9133868 37 + 21540570 CGAtatcattttt----------agttttcttggcggattggaaaat-----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1040119 45 -  4500979 CGTGatgatttgttcaaaat--aagtGTCATTCATAAGCTATTGTGT-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeJap4.Scaffold1521  126957 40 +   152914 ------CATAAATACCGAAT--CAGAGAAATT----AAACATTAAATTCTAC
i caeJap4.Scaffold1521 C 0 I 1
e caePb3.Scfld02_0     2315273 41 +  4147112 I
e caeSp111.Scaffold629 1609449  0 - 33334924 I

a score=183794.000000
s ce10.chrX            4005885 312 + 17718866 TTCAGAGAACTCGCTGACGTCAAAGAAGAGCATGACGATCTTCTCCGATGTTATCGCCGTCTTCAACTGTGTCTGGATATAACTGGAAGATCGTCGAGATGCAATGAGAGTTGCCTTGCAGTTCGTCGTAAGAAAGTTCAAGTAGGGGATCACACTTCTGATAGAGTTGACATGGAGTTGCATAAGGAGAAAGAGCTGATGACTGATACAATGAAGCAGATGAAAGAAATAGGTGAAAGAGTGGAACGTCAGCTTGAGGTTAATCAATCAGCCCGGAAAAATCTGTTGAGAGATTTGACTTTGAAACAAGAA
s cb4.chrX             9133905 312 + 21540570 ttcagagagctTGCGGATGTTAAGGAAGAGCACGACGATCTTCTTCGCTGCTACCGACGTCTACAACTCTGTTTGGATATCACTGGTCGAGCAACTCGGTGCAACGAAAGTTGTCTCGCTGTCCGCCGCAAAAAGGTTCAAGTTGGGGACCACACCTCTGATAGAGTTGATATGGAGCTTCATAAGGAGAAGGAGTTAATGTCAGAGACTGTGAAACAGATGAAGGAAGTTGGAGAGCGTGTGGAGAGACAGCTGGAAGTGAACCAGGCAGCTAGGAAGAATCTTCTCCGTGATTTGACTTTGAAGCAAGAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1040164 312 -  4500979 TTCAGGGAGCTAGCCGACGTCAAGGAAGAACATGATGATCTTCTCCGATGCTATCGTCGTCTCCAGCTCTGCTTGGATATAACTGGAAGAGCAACTAGATGCAACGAAAGTTGTCTTGCAGTACGCAGAAAGAAAGTTCAAGTTGGAGACCACACGTCGGATAGAGTTGATATGGAATTACACAAAGAGAAAGAACTTATGTCCGAAACTGTAAAACAAATGAAAGAAGTTGGGGAACGTGTGGAAAGACAGCTAGAAGTGAATCAAGCAGCAAGAAAGAATTTGCTCCGTGATCTCACTCTGAAGCAAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2315314 312 +  4147112 TACAGGGAGCTAGCCGATGTTAAAGAAGAGCATGACGACTTGCTCAGATGTTACCGTCGTCTTCAACTGTGCTTGGATATTACTGGAAGAGCTTCCAGATGCAATGAAAGCTGCCTTGCGGTCCGtcggaaaaaagttcaagtcGGAGATCATACATCAGACAGAGTTGATATGGAACTTCATAAGGAGAAAGAATTGATGTCAGAGACTGTGAAGCAAATGAAAGAAGTGGGCGAACGAGTTGAGAGACAACTGGAAATGAATCAAGCTGCTAGAAAGAATTTACTACGTGACTTGACGCTCAAACAGGAA
i caePb3.Scfld02_0     I 41 C 0
s caeJap4.Scaffold1521  126998 312 +   152914 TTCAGAGAGTTAGCCGATGTAAAGGAAGAGCACGACGATCTTCTTCGTTGCTATCGTCGCCTTCAACTATGTTTGGATATCACGGGAAGAGCGACAAGGTGCAACGAAAGTTGTTTAGCAGTTCGTCGAAAGAAGGTTCAAGTTGGAGATCATACGTCAGACAGAGTTGATTTAGAGCTCCATAAAGAAAAAGATTTGATGTCGGAAACGGTGAGAGGAATGAAGGaaatcgcgggaaaagttgaAAGACAACTCGAAGTAAATCAAGCTGCACGGAAAAACTTGATGCGTGATTTAACACTCAAGCAAGAA
i caeJap4.Scaffold1521 I 1 C 0
e caeSp111.Scaffold629 1609449   0 - 33334924 I

a score=254180.000000
s ce10.chrX            4006197 417 + 17718866 GCCATCAGCTTAGATCACAAGTCGGTTGCAATTGGAGCCGATGGCACT-AAAACAGTTATTCGAACACCTGATGGTGATCGTCTGGATTTCAGGTACACTTT---------ACC---ATTATCATTATGA------------ATATAAACTTAGTTTCCAGAGAAGGAGCACCGTTGCAACGAATGAGTGAATACTCAGAATGGATTGAAAACACCGGAAACAATCTGAACTATGCGGCAAGGGCAAGAGTTCACAGTAGGAAAATTGGGCAGGTGGGGAATATGAGGGTAGAACTACGCGAGAGGAAAACTTT--------CAGAAATTGTGTCAATCAATTCGTGAAATGGCACATCAGCTGCGCACTGAGGCAATCGCTGTCGAAGCACTTCTGAAAGATTCTGTCAGAAACTGGCAAGAATGGAAGGACAATTTGCATTCACAGGT
s cb4.chrX             9134217 416 + 21540570 GCGATAAGTTTGGATCACAAGTCTGTCGCTATTGGAGCTGATGGAACA-AAGACGGTGGTTCGAACTCCAGATGGTGATCGCTTGGATTTCCGGTAagcttttttctaaaaact--------gcttgaag---------------taaaata--ttttcagcgaAGGTGCTCCTCTTCAACGTATGAGCGAGTACTCGGAATGGATTGAGAATACTGGAAACAACTTGAACTACGCGGCTCGCGCAAGAGTACATAGTCGAAAAATTGGACAGGT--------TTGTTCTTCATTAAGCCACTGAAAAGATTTTTCACTCTTTAGAAGTTGTGTCAGTCGCTTAGAGAATTGGCGTCACAGTTGCGTACCGAAGCGATTGCCGTGGAGGCTCTTCTGAAGGATTCGGTCCGAAACTGGCAAGAATGGAAGGACAATCTGCATTCTCAGGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1040476 423 -  4500979 GCAATCAACTTGGACCACAAGTCCGTGGCAATTGGAGCTGATGGGAGT-AAGAGTGTTGTGAGAACTCCAGATGGGGATCGCTTGGATTACCGGTa--------ttgaaaaactaacaaaacaattgaaa---------atcagTTAGAATG---TTTCAGCGAAGGAGCACCACTTCAAAGAATGAGTGAATACTCCGAATGGATAGAAAACACCGGGAATAATCTGAACTACGCGGCCCGAGCAAGAGTTCATAGCCGTAAAATTGGACAGGT---ACCAAGTAGTGACCAGTTGTATACGAagtaaattat---attttcagaaattgtgtCAGTCACTTCGTGAGATGGCTTCTCAGCTGAGAACTGAAGCAATCGCTGTGGAAGCTTTGCTGAAGGATTCTGTCAGAAACTGGCAGGAGTGGAAAGACAATCTGCATTCTCAAGT
i caeRem4.Crem_Contig0 C 0 I 35
s caeSp111.Scaffold630 6010019 375 + 20921866 GCTATCACCCTCGATCACAAATCTGTTGCAATCGGTGCAGATGGGAGCAAAAACTGTGGTTAGAACTCCTGATGGGGATCGCCTTGATTTTCGGTAAGT----------GAACC---ATGGattttggga--------ttttattttttcat--tttacagCGAAGGAGCTCCTTTACAAAGAATGAGTGAGTATTCGGAATGGATCGAAAACACTGGAAACAACTTGAATTATGCGGCAAGAGCCAGAGTTCATAGTCGTAAAATTGGA----------------------------------------------------CAAAAATTATGTCAGTCACTCCGAGAAATGGCGTCTCAGTTACGTACTGAAGCAATTGCTGTCGAAGCGCTTCTGAAGGATTCTGTGAGAAACTGGCAGGAATGGAAGGACAATTTACATTCGCAAGT
i caeSp111.Scaffold630 I 12475 I 37
s caePb3.Scfld02_0     2315626 420 +  4147112 GCCATTAGTTTGGATCACAAATCCGTTGCCATTGGAGCTGATGGAAGT-AAAACAGTTGTCAGAACTCCTGATGGCGATCGCTTGGATTTTCGGTAAGTCT---AGTGAGAACG---Aattctttagaaa------------aattaaaaag--ctTACAGTGAAGGCGCACCGCTTCAACGTATGAGTGAATACTCGGAATGGATCGAGAACACTGGAAATAATCTCAACTACGCGGCACGAGCCAGAGTTCATAGTCGGAAAATTGGACAGGT------CAGCTTGAATAACATGATTTCAGTTCAAGTGTT---CTTTTCAGAAGCTCTGTCAATCACTTCGGGAAATGGCATCTCAGTTGCGTACAGAAGCAATAGCTGTGGAGGCTCTTTTGAAGGATTCTGTGAGAAATTGGCAAGAGTGGAAGGACAACTTGCATTCACAAGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  127310 375 +   152914 GCTATCAGTCTGGATCACAGATCTGTGTCGATGGGAGTGGATGGGAAT-AAAACAGTTACCAGAACACCCGATGGCGATCGCTTGGACTTCcggtaaat----------aaatt----------tttagacTGCAGCATAATAATGCGAATG--ATTTTAGTGAGGGTGCCCCACTCCAGCGCATGAGTGAATACTCGGAATGGATTGAAAACACTGGAAACAACTTAAACTATGCGGCTCGTGCTCGTGTGCACAGTCGTAAAATAGGA----------------------------------------------------CAAAAATTGGCTCAAACGATTCGGGAAATGGCTCAACAATTACGTACAGAAGCCATCGCCGTAGAGTCACTGCTTAAAGATTCTGTTCGGAATTGGCAGGAATGGAAGGATAATCTTCACTCTCAGGT
i caeJap4.Scaffold1521 C 0 C 0

a score=546.000000
s ce10.chrX            4006614 1 + 17718866 T
s cb4.chrX             9134633 1 + 21540570 T
i cb4.chrX             C 0 I 33
s caePb3.Scfld02_0     2316046 1 +  4147112 T
i caePb3.Scfld02_0     C 0 I 34
s caeJap4.Scaffold1521  127685 1 +   152914 T
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 6010394 37 + 20921866 I
e caeRem4.Crem_Contig0 1040899 35 -  4500979 I

a score=360.000000
s ce10.chrX            4006615 5 + 17718866 TGGAG
s caeJap4.Scaffold1521  127686 5 +   152914 TGGGG
i caeJap4.Scaffold1521 C 0 I 31
e caePb3.Scfld02_0     2316047 34 +  4147112 I
e cb4.chrX             9134634 33 + 21540570 I
e caeSp111.Scaffold630 6010394 37 + 20921866 I
e caeRem4.Crem_Contig0 1040899 35 -  4500979 I

a score=0.000000
s ce10.chrX            4006620 511 + 17718866 GGGTTTTATGTTATTTGAGTTTTAATCACATACGGCAGGTTTTAGGTACAATGTATCAAAATATTACCTTCTAGCTTTTAAAGTATAAAACGTAAGGGTTACTTAAACGAGATACACTAAGTTTTAAGTAGTCTAGTACTCACAAGTGAATTTCTATAATATTCCGAACTGAAATTAGAAAACGTCAAAAGTTGGCTAGACCTGGTTTTCAACACCTTTTATTGGAATATTACTATGCAACTCCAGATCTCTGGGTAATACTCGAGGACAAACTCCTGTTACTGTCTCGATGTTTAGGACCGTAGTCCGTAGATGGTTTTTCATGATATCAAGATGGAGTGAACGATCGTTAATGTTTTTTGTATCCGAAGATATAATAAATACAATAAACTTCTCTCCATTACAACAAAGTTTCAAAAAAAGCTCACTTTATTAGGATTTCCATGTTTTCAAAAATATTTTTCTAGCTATCACTAATCGGATTCAAATTTACAACCTCTGTATAAAATGC
e caePb3.Scfld02_0     2316047  34 +  4147112 I
e caeJap4.Scaffold1521  127691  31 +   152914 I
e cb4.chrX             9134634  33 + 21540570 I
e caeSp111.Scaffold630 6010394  37 + 20921866 I
e caeRem4.Crem_Contig0 1040899  35 -  4500979 I

a score=933.000000
s ce10.chrX            4007131 16 + 17718866 ACATTATTACACAACT
s caePb3.Scfld02_0     2316081 16 +  4147112 ACATTTatacacaatt
i caePb3.Scfld02_0     I 34 C 0
e caeJap4.Scaffold1521  127691 31 +   152914 I
e cb4.chrX             9134634 33 + 21540570 I
e caeSp111.Scaffold630 6010394 37 + 20921866 I
e caeRem4.Crem_Contig0 1040899 35 -  4500979 I

a score=546.000000
s ce10.chrX            4007147 1 + 17718866 T
s cb4.chrX             9134667 1 + 21540570 T
i cb4.chrX             I 33 C 0
s caePb3.Scfld02_0     2316097 1 +  4147112 t
i caePb3.Scfld02_0     C 0 I 4
s caeJap4.Scaffold1521  127722 1 +   152914 T
i caeJap4.Scaffold1521 I 31 C 0
e caeSp111.Scaffold630 6010394 37 + 20921866 I
e caeRem4.Crem_Contig0 1040899 35 -  4500979 I

a score=358465.000000
s ce10.chrX            4007148 471 + 17718866  
s cb4.chrX             9134668 468 + 21540570  
i cb4.chrX             C 0 I 6396
s caeRem4.Crem_Contig0 1040934 462 -  4500979  
i caeRem4.Crem_Contig0 I 35 I 11
s caeSp111.Scaffold630 6010431 473 + 20921866  
i caeSp111.Scaffold630 I 37 I 3
s caePb3.Scfld02_0     2316102 468 +  4147112  
i caePb3.Scfld02_0     I 4 I 3
s caeJap4.Scaffold1521  127723 569 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-4568.000000
s ce10.chrX            4007619 137 + 17718866 TCCACT-------TTTCAATTT-----TCGTTAGTTT--AGAA---------------TTCTCTCTTTTGATATCTA-----AATCGATTAATCATATGAA------------TGG----------------------------------------------------TTTTTCTT--TTGTTTTGTTTTTTTTTTC------ATAGATAATAGATCACAAGATAGAATAATGTTTACTTCTT
s caeRem4.Crem_Contig0 1041407 186 -  4500979 tttattattttaatcTTTATCT---AATGTTTAGTTTAGCGATGtacaattcaattt-ctttctctctcga-aACTA-----TAACAATTAATCAATGAAA------------TGatt----------------------ttctttcaacataaacattttatttttgtttctatttttcgtatag-ttttttACTT------------GATTGATCACAAGATCGAACGgttatctttcttt
i caeRem4.Crem_Contig0 I 11 C 0
s caeSp111.Scaffold630 6010907 168 + 20921866 CCCCCC-------TTCCGACAT---TCTGTCTTTTCT--TGATAtaccgtttctttttctttttcttttga-tgatA-----TTCCGATTAATCAATGAAA------------TGGTT-------------------------TCTTTATCAATataatctct-----tttctcttt-ttgtattgttttttttctt--------------cagatcaCGAGATAGAAcgcatttcttctttc
i caeSp111.Scaffold630 I 3 C 0
s caePb3.Scfld02_0     2316573 175 +  4147112 tcccccagaataactcaaaaata--tatgtttaGTTT--CGAACTACTATatattct--ttcttctctcgA-ATATA-----TGTCGTTTAATCAATGAAA------------TGG---------------------------TCTCAGCCAAAACATTCTAT-----TTTCTGTTTgttgctttgttttttttttc------------gatagatCACAAGAtaggaattttttcttttctt
i caePb3.Scfld02_0     I 3 C 0
s caeJap4.Scaffold1521  128292 219 +   152914 tcttct-------ttttaacATAACACTGTCTAGTTC----------TACTAACCCC-CGATCTCCCAAAA-AACCAAACACTACCGATAAATGATCAAAAAATCACCAAGGCTAGATAACAGGGAAACATACGCGAACtgtttcttgaaaaaaatctacagt-----atctttttgataatcttcttctttttgtcTGTTGTTGATATGGCCGGTCATGGGGTTGAAAcggtttttcgtttt
i caeJap4.Scaffold1521 C 0 I 58
e cb4.chrX             9135136 6396 + 21540570 I

a score=-5959.000000
s ce10.chrX            4007756 29 + 17718866 AAAATTAAATATATCAAAAAGTCAGTTT--T
s caeRem4.Crem_Contig0 1041593 28 -  4500979 ttttttt--taaacagaatcTTTCAACGAT-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6011075 26 + 20921866 aatctTC--TTGAGTGAAAAGGTATATA---
i caeSp111.Scaffold630 C 0 I 55
s caePb3.Scfld02_0     2316748 28 +  4147112 aatcTTCAATCGCGAGAAATACTGTATT---
i caePb3.Scfld02_0     C 0 I 5
e caeJap4.Scaffold1521  128511 58 +   152914 I
e cb4.chrX             9135136 6396 + 21540570 I

a score=-592.000000
s ce10.chrX            4007785 33 + 17718866 TGCTGACACATTAATTCCGATTGATCACG---GCTG
s caeRem4.Crem_Contig0 1041621 35 -  4500979 AAGTGATACATC-ATCTTGATCCAAAACGAAACTTG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2316781 35 +  4147112 CGCCCATCCATC-AACCCAATCGAAATCTAAAGGTT
i caePb3.Scfld02_0     I 5 C 0
e caeJap4.Scaffold1521  128511 58 +   152914 I
e cb4.chrX             9135136 6396 + 21540570 I
e caeSp111.Scaffold630 6011101 55 + 20921866 I

a score=289.000000
s ce10.chrX            4007818 9 + 17718866 TCAAAAAGG
s caeRem4.Crem_Contig0 1041656 8 -  4500979 TTA-GATGA
i caeRem4.Crem_Contig0 C 0 I 2
s caePb3.Scfld02_0     2316816 9 +  4147112 TGAGGATGa
i caePb3.Scfld02_0     C 0 I 3
s caeJap4.Scaffold1521  128569 9 +   152914 TCACAAAGA
i caeJap4.Scaffold1521 I 58 C 0
e cb4.chrX             9135136 6396 + 21540570 I
e caeSp111.Scaffold630 6011101 55 + 20921866 I

a score=-1186.000000
s ce10.chrX            4007827 5 + 17718866 TTTCG
s cb4.chrX             9141532 5 + 21540570 tttct
i cb4.chrX             I 6396 I 2
s caeRem4.Crem_Contig0 1041666 5 -  4500979 TTCCG
i caeRem4.Crem_Contig0 I 2 I 2
s caePb3.Scfld02_0     2316828 4 +  4147112 tttg-
i caePb3.Scfld02_0     I 3 I 2
s caeJap4.Scaffold1521  128578 4 +   152914 TGTC-
i caeJap4.Scaffold1521 C 0 C 0
e caeSp111.Scaffold630 6011101 55 + 20921866 I

a score=249856.000000
s ce10.chrX            4007832 653 + 17718866  
s cb4.chrX             9141539 634 + 21540570  
i cb4.chrX             I 2 I 83
s caeRem4.Crem_Contig0 1041673 626 -  4500979  
i caeRem4.Crem_Contig0 I 2 I 102
s caeSp111.Scaffold630 6011156 632 + 20921866  
i caeSp111.Scaffold630 I 55 I 2
s caePb3.Scfld02_0     2316834 601 +  4147112  
i caePb3.Scfld02_0     I 2 I 2
s caeJap4.Scaffold1521  128582 643 +   152914  
i caeJap4.Scaffold1521 C 0 C 0

a score=-9099.000000
s ce10.chrX            4008485 34 + 17718866 TTAGAAGTTT---GTACAAAATTCCTTTCACTTCTTG
s caeRem4.Crem_Contig0 1042401 28 -  4500979 TTTCAATTCT---AAgtaaaatgc------cattttt
i caeRem4.Crem_Contig0 I 102 I 25
s caeSp111.Scaffold630 6011790 24 + 20921866 ATTCTATCTTCCGGacg-------------ttttttg
i caeSp111.Scaffold630 I 2 I 20
s caePb3.Scfld02_0     2317437 21 +  4147112 ATTAAAGTCT---Gagt-------------cattttg
i caePb3.Scfld02_0     I 2 I 24
s caeJap4.Scaffold1521  129225  4 +   152914 -TACA--------------------------------
i caeJap4.Scaffold1521 C 0 C 0
e cb4.chrX             9142173 83 + 21540570 I

a score=262372.000000
s ce10.chrX            4008519 446 + 17718866  
s cb4.chrX             9142256 436 + 21540570  
i cb4.chrX             I 83 C 0
s caeRem4.Crem_Contig0 1042454 440 -  4500979  
i caeRem4.Crem_Contig0 I 25 C 0
s caeSp111.Scaffold630 6011834 435 + 20921866  
i caeSp111.Scaffold630 I 20 C 0
s caePb3.Scfld02_0     2317482 423 +  4147112  
i caePb3.Scfld02_0     I 24 C 0
s caeJap4.Scaffold1521  129229 466 +   152914  
i caeJap4.Scaffold1521 C 0 I 74

a score=-3597.000000
s ce10.chrX            4008965 88 + 17718866 ACAATTTAGAAAAAGAA-----------ACGGTCAGAAAAGGTGCATTGTGATATGATATAATTAAGAACCTTAGAACCCAAACCACACTAC--TGCCCCC
s cb4.chrX             9142692 76 + 21540570 agaatatttgaaaaatatgtctGTTAAGGGAGGGATAGAGAGT--------ACGAAATGTGAC---------TAGAACC-------CGCTTCCTCA-GACC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1042894 78 -  4500979 --aataacatgAAATTA-------GAAAGTAAGCACAAAAAGT--------ACCGAATGCGGTACGAGA---TAGGACCCAAACTACACTTC--TG-TCCC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6012269 62 + 20921866 agaattattaaaaatca-------------gGTGAGAAAGGGC--------AGAAAA---------------TGGAACCCAAACTACTTTGG--TG-ACCC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2317905 67 +  4147112 ataattttaataGAACA-------ACGAAGAGTGAAACTGGG---------ACAAGA---------------TAGAACCCAAACTACACACC--TG-CCCC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  129695 74 +   152914 I

a score=67756.000000
s ce10.chrX            4009053 108 + 17718866 ATATTTATATGTTTTCGGTC-TGTTATCATTGCACAATCATTGTTGCACCATATGGCTCGACTTCCCACTATC-AACTTATCGCACTTTTCTCATTGTTTTC-ACGCGCTT
s cb4.chrX             9142768 106 + 21540570 ACTTATATATGCGTTCAAGT-TGTTATCATCACAAAATCATTGTTGCACCATATGGCT---CTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTT-ACGCCCCT
i cb4.chrX             C 0 I 5804
s caeRem4.Crem_Contig0 1042972 105 -  4500979 ATATTTATATGTTTTCAGAC-TGTTATCATTCGAAAATCATTGTTGCACCATATGGCTTCACTTCCCACTATC-AACTTATCACTTTCCC---ATTGTTTTC-ACCCCCTT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6012331  99 + 20921866 AT-TTTATAT-CGTTCCGTCGCCTTA----TCAAACATCATTGTTGCACCATATGGCTTCACTTCCCACTATC-AACTTATCAccattctt---ttgttttt--ttttctt
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2317972 106 +  4147112 AT-TTTATATGTTTTCCGTC-CCTTATCATTCAGAAATCATTGTTGCACCATATGGCTTCACTTCCCACTATC-AACTTATCACCAcctttc-attgttttt-actCCCTT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  129769 107 +   152914 GTATTTATATTTGTTCCGTT-TGTTATCAGTAAAAAATCATTGTTGCACCATATGGTTTTGC-TCTCATTATC-AAATTATCACCTCTCACT-ATTGTTTTTAACACCCTT
i caeJap4.Scaffold1521 I 74 C 0

a score=2820.000000
s ce10.chrX            4009161 3 + 17718866 TGT
s caeRem4.Crem_Contig0 1043077 3 -  4500979 TGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6012430 3 + 20921866 tgt
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2318078 3 +  4147112 TGT
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  129876 3 +   152914 TGT
i caeJap4.Scaffold1521 C 0 I 2003
e cb4.chrX             9142874 5804 + 21540570 I

a score=11323.000000
s ce10.chrX            4009164 79 + 17718866 TC-ATATCACACACTCATACCAGGAGGAGGCGTCAT-CATTTCGTTTCAGAGAA--CTGTGCTCTTTGA--C----AGAAAGGTTGAAA
s caeRem4.Crem_Contig0 1043080 73 -  4500979 TTTAGGGCACAC----------AGGGGAGGAGTCATAAATGTCGATTCAGGAAATTTTGTGTTGCCTGC--G----TGACAAGTTGAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6012433 76 + 20921866 ta-aGGGCACAC----------GTAGGAGGAGTCAC-AGAGTCGTTACAGGAAATTTTGTGTCGCTTGTACGTGA-TGAAAGGTTGAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2318081 75 +  4147112 TATAGGGCACAC----------GTAGGAGGAGTCAC-TGTGTCGTTTCAGGAAA-ATTGTGCTGATTTT--GTGATTGAAAGGTTGAAA
i caePb3.Scfld02_0     C 0 I 1475
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=-627.000000
s ce10.chrX            4009243 26 + 17718866 CAATTGTTGGAATTAATAGGA-----AATGT
s caeRem4.Crem_Contig0 1043153 24 -  4500979 -------TGACGATGACATGATAAAGAATGT
i caeRem4.Crem_Contig0 C 0 I 1414
s caeSp111.Scaffold630 6012509 14 + 20921866 -------TGAAAGTGACATGT----------
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2318156 1475 +  4147112 I
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=982.000000
s ce10.chrX            4009269 41 + 17718866 GGAGAAGTTTTGTCCGATCTCTGTACTTTTGAATTTGAAAA
s caeSp111.Scaffold630 6012523 38 + 20921866 GGAAAAAGTGTGTCTACTTTTTGTTCTCCT---CTTGGAAA
i caeSp111.Scaffold630 C 0 I 1418
e caePb3.Scfld02_0     2318156 1475 +  4147112 I
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeRem4.Crem_Contig0 1043177 1414 -  4500979 I

a score=0.000000
s ce10.chrX            4009310 2667 + 17718866  
e caePb3.Scfld02_0     2318156 1475 +  4147112 I
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6012561 1418 + 20921866 I
e caeRem4.Crem_Contig0 1043177 1414 -  4500979 I

a score=100.000000
s ce10.chrX            4011977 20 + 17718866 CAAATATTCCATG-----ACCACCC
s caePb3.Scfld02_0     2319631 25 +  4147112 CATATATTTTATGTTTCTGCCAGAA
i caePb3.Scfld02_0     I 1475 C 0
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6012561 1418 + 20921866 I
e caeRem4.Crem_Contig0 1043177 1414 -  4500979 I

a score=515.000000
s ce10.chrX            4011997 24 + 17718866 ----AAAAAAACGCTAACAT--------------GCCTCTTA
s caeSp111.Scaffold630 6013979 34 + 20921866 aaaaaaacgaacattAACCCAAAATG--------TCCTCTCA
i caeSp111.Scaffold630 I 1418 C 0
s caePb3.Scfld02_0     2319656 38 +  4147112 ----AAAGGAACATCGGCAGGAATTGTTCTTTTATTCTCTTG
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeRem4.Crem_Contig0 1043177 1414 -  4500979 I

a score=-9980.000000
s ce10.chrX            4012021 293 + 17718866 ----------CTCATCTCTTCGCACACT-CTCTCTACCTCAATCGAACACGCCTCTAGGCCGATGCCTGCGCGTCCGATTCAGTCTGCCAGTACAGGCAGCCG-TCGACGCGACCGGCT---------CTCTTGTCTCCT------------CTTCTTCTTTT---------TTATTGTAA--CCAAATTTT-----------ACTGGTTTAC------ACATTTA--------TCT-------ACTTTCAGGTA-AAGCAACCATGG---ATTCTACAACATCTCTTCCAAACAATGTGT---TGTTGAAAA---AGGCAAGACCGAGCAA-----------GATCTTCGCCGTTACTTCAGCCAACGCTTTGAATGTCAAAACGGAGC---------------
s caeRem4.Crem_Contig0 1044591 337 -  4500979 ----------CTCTTCTTTTCTGGCACTGTTTTGCTTTTAT----GACCCGCCCCTTGGCCGTTGGC-ATTcgttcggttttttcggtcgGTTCGGACATAGACTCGAC-CGGCCGagctctcttcttctcttcttttct------------cttctgttttcttccgtacttttccttaattcttcccttt-----aagtatcttcATATGT------ATCTTATCGTT----TCCAAATATGTGTTATAGGTGTAAACTACAATGG---ATCTGTCGGGATTACTTCTGGCAGAGAATC-----Caacaaa---tgagaagaagaaggtggaCCCGAACACTATCTCAGATGTTACGTCGTCATATATTCTGAA--AGATAACAGTGGAGC------------
i caeRem4.Crem_Contig0 I 1414 I 24
s caeSp111.Scaffold630 6014013 333 + 20921866 CTCGATCACACTCTCTCACTTTCCCTCT-TTTTGTCCCACT----GCCACGCCTCTAGGCCGATGCC-CTCACAGAGATTCAGTTTGCCAGTACAGGCAGCCGTTCGA--CGGTCGGctcc-------ctcttcttttcctccgaCAGCTAGTTGCGATATTC---------GTTTCGTGattcactatttttcatcgaattgcTTTCTTTCT------ACATAAACAGT----TCT-------TCTTTCAGGTA-ATACCGCAATggcttctcctcctccatccCTCCCGGATGGAGAACGTCTCCCAAAAA---TGACACCTAGTGGCGA-----------TTTCTCTGCGGTATCTGTGGA---------------GACGATGgagaaactcaaaaagtcT-
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2319694 323 +  4147112 TTCAAtcacactctctc----tctcatt-ttgtGCCCTCCTATTGGACACGCCTCTTACCAGATGCC-GCGCGTCCGATTCAGTTTGTCGCTACAGGCAGCCGTTTGA--CGGCAGGGCTCGTTCAATCTCTCCTTTACT---------------CGATTTTC---------TTTATGGAAGTctctgtttt-----------ctttatttgttAGATGAAGTAAGCATTCTTGTAT-------CATTCCAGGTA---AACGCCATGG---CTACTGTATCATCTCCTTCTGGAGATGAGCAGCAGCAAAAAAGCTCGGCAAAGACGGGGAG-----------TAAATTTGCAGTCACATCGTC---------------CAGATTGGTGAAACTAGATGAAACTC
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=-343.000000
s ce10.chrX            4012314 17 + 17718866 CGGTGATTTTTGTGAAG
s caeSp111.Scaffold630 6014346  6 + 20921866 -----------GTGGAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2320017 11 +  4147112 ATGTG------ATGGAT
i caePb3.Scfld02_0     C 0 C 0
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeRem4.Crem_Contig0 1044928 24 -  4500979 I

a score=1871.000000
s ce10.chrX            4012331 30 + 17718866 TCGGATGATTTGAATCAAGC------------GAATACACCA
s caeRem4.Crem_Contig0 1044952 31 -  4500979 -----TCAAAT------GCCAGTTAAAAGAAAGGACACTCCG
i caeRem4.Crem_Contig0 I 24 C 0
s caeSp111.Scaffold630 6014352 42 + 20921866 TcgattgaaataaataaggccccgaagagaaaagatactCCA
i caeSp111.Scaffold630 C 0 I 93
s caePb3.Scfld02_0     2320028 42 +  4147112 GCTAGTGAAATCAAGGAGTCACCCAAAAGGAAAGATACTCCA
i caePb3.Scfld02_0     C 0 I 53
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=-764.000000
s ce10.chrX            4012361 41 + 17718866 CTGACTGGCTCAAAGTTTG---GGACACATCTCG---------------CATGCATCC------G
s caeRem4.Crem_Contig0 1044983 65 -  4500979 TATGTTGGAAGAAAGTTTGAATGGAGAAATGTCGATATGAGATCTTCTGCAGTGATCCCTCTGAG
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2320070 53 +  4147112 I
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6014394 93 + 20921866 I

a score=-295.000000
s ce10.chrX            4012402 12 + 17718866 CACAAGCTGTCT---------
s caeRem4.Crem_Contig0 1045048 21 -  4500979 CACGAACCGTTCTGGAGCTGT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2320123 12 +  4147112 CACACGCGGATC---------
i caePb3.Scfld02_0     I 53 I 13
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6014394 93 + 20921866 I

a score=-2689.000000
s ce10.chrX            4012414 58 + 17718866 -----------TCATCGTACTGTAAATGCTAGCAACTACTCTACAATGAGCGATGGTGGTCTGTACACT
s caeRem4.Crem_Contig0 1045069 49 -  4500979 -----------TCGTCGTA---------CCAGCGATTATTCAATCTTCACTGATTTTGAAACTTGGGGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6014487 51 + 20921866 TTCGGAAACT----TCACT--------------GACCTTCCCACCTTAACCGATTTGATTTCATCGACT
i caeSp111.Scaffold630 I 93 C 0
s caePb3.Scfld02_0     2320148 60 +  4147112 TACAGATACTGTCGTCGCT---------CAAGCAACTACTCAACTTTTGCGGAAATCGGTTCCTACAGC
i caePb3.Scfld02_0     I 13 C 0
e caeJap4.Scaffold1521  129879 2003 +   152914 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=6139.000000
s ce10.chrX            4012472 110 + 17718866 AGCGACGAGCCGTGCAGCTCGGCCCAGGCTGAATTCCG---ACTTGCTGCTCACT------GGGAGAGCACGTTTACCCGTACTCGTGAAATCCATTGC--------GACACTGGATACTCGTCGCA
s caeRem4.Crem_Contig0 1045118 116 -  4500979 GCTGATCAACCATGCAGCTCCGCGCAAGCTGAAGCTCG---TCTGAAAGACTatcaaaagagagaaagtttGTTTTCCCGCACATATGGCAGTCAATGC--------GACACTGGGTATGGATCAAC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6014538  83 + 20921866 AACGACGAACCATGCAGTTCTGCCCAAGCAGAGGCTCG---TCTGTCTCGACATC---------------------------------TCAGCCAATAT--------GACGGTGGATACTATTCTAC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2320208  92 +  4147112 CCTGATGATCCGTGCAGCTCAGCTCAAGCAGAAGCCCGAGTTTTGGCAAGCCAGT---------------------------------TCAGC--ATGTTCTCTCGGGATAGTGGATATTCTTCTCC
i caePb3.Scfld02_0     C 0 C 0
s caeJap4.Scaffold1521  131882 101 +   152914 AGCAACATGCCGTGCAGCTCATCCCAGGCCAACGCTCG---TGATGCTGCAAAAA------------------ATGCTCGTGAACGAACCCGCAACTAC-----CAGGACACGGGATACATTTCACA
i caeJap4.Scaffold1521 I 2003 N 0
e cb4.chrX             9142874 5804 + 21540570 I

a score=-5574.000000
s ce10.chrX            4012582 32 + 17718866 AAGCCCACCTGAAACAACCG--------------------------------TTTTC-----------------------ATTCAA-A
s caeRem4.Crem_Contig0 1045234 23 -  4500979 AAGTCCAGGTC-----------------------------------------TCTTC-----------------------ATTCAAA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6014621 30 + 20921866 GAGTCCAGCTGCGACAT-----------------------------------ACTTC---------------------CGATCCGA--
i caeSp111.Scaffold630 C 0 I 60
s caePb3.Scfld02_0     2320300 86 +  4147112 AAGTCCAGCTCCAACGTGTTGGAGTCCCACACATGTTCCAACGGCTAATGTAACTCCTGCAAAGAATTCATACATGATCAATTCAA--
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9142874 5804 + 21540570 I

a score=-2385.000000
s ce10.chrX            4012614 37 + 17718866 ---AATCTCGCTTTCCGGTA------GCTGAAAAGCCTG---GCACCCC---------
s caeRem4.Crem_Contig0 1045257 58 -  4500979 TGCCATGTTTGTCGACTGTGGAAGTTACCGAGAAGAAAGATAGAAACAATGTCGAGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2320386 39 +  4147112 ---AACCTCTGATGGTGGTTGA----GCTGAAAAGGGAG---GAACCAA---------
i caePb3.Scfld02_0     C 0 I 17
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6014651 60 + 20921866 I

a score=-19238.000000
s ce10.chrX            4012651 248 + 17718866 ---------------------------GGAGTTG--------AAAAGTTTCGAGTCGAAGAAACTTGTGCAAAAGA----------------------------AGTCAGGCAACGCATCT-----------ACCCCAACCA----GAAA------------ATTGGCAAGTGAA--------GAA--------AAGAAAGCTA-------------------------------------AGAATACAAG-CATGGGTCA--------------------AACGCCATCCAAACTCAAATCACC---------------------------GAAAGCTTTGAAGATGG-----------------TCAAGAAGGAGAATGAGCCAGCGATTCCACCAAATCATTTTGAAGGAAAGGTTTACGGATACCTAGTGGACGATATGTCAGCTATTGGAA
s caeRem4.Crem_Contig0 1045315 347 -  4500979 ---------------------------GGAGCCG--------AAACAAATCgaactgaagaaaatagaagcaAAGAATTTGGAACCAAAAGAGGCGCTCCCAGAAAACGGTCAGCTAAACTTTTGGATTTCAACACCTGCCGTTCAGAAGGTAGT-------TAAACCAAATAGATTTGTGGTG----------AAAAAGGTTG-----------------------------TACTCAATGTTCAGAATG-CTGACGGCA---------CTGCTTCTGATAACG------AATCTACAGAAGTTCACACGGGAGCAAAA------------GAGAAATCAAACAAAGGTATCAAAGTCAAGGTGCTAAGACCGGAGAATCAACCAGCAACAGCACCGGATAATTTTGCTGGAACCCAGTACGGAGATATGGTAGACCGCCTAGCTACACTTGGGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6014711 278 + 20921866 aaag-----------ttgAACAT-TGTAAAGATA--------ATGACGGTCGAACCAATAATAAGAGAAGCAAAAA------------------------------------------------------------CCTCcg----gaaa------------agaaacaactgGAAGTGTT--GAAACAATCA-AGAAAGGCGA-------------------------------------GAAGAAAACGTTCCAGGTCaatcaaagttcaaaattgGATGATGTCATGAAAACAACCACAACT-------------------------TCAAAGAAACCAAGAAAGA-----------------TCCGTCCGGAAAACATGCCAGTGGAAGCGCCAAATCACTTTGCGGGAAACCTCTATGGCTACTTGTTGGAAACAATGACCGTCGCTGGAA
i caeSp111.Scaffold630 I 60 C 0
s caePb3.Scfld02_0     2320442 427 +  4147112 aaagacgaATCTGCTTTGAACACATCAAAAGACATGGGAAACACAAAgatcgaagaaaagaaaagcgagGTGAAGAGTCAAATGCAAATCGAG-----------AAACG--------AACTGTTGGCATAAAACTCTCGCCC----GAAAGCATCAAAACCGAGAAACATGTCGACATGATGGGAGACGACAACAAAAATGCGAATAGCAAGAAAATGTTAGAAATGAAGATTCTTtcgatggagaagaagactgATGCCATCCCAGGATCATCTTCGGACAACGCCAAGGCAACTGCTGTTGCT---AAGGAAGCaaaatcggagaaagtcaaaaagtcaaaaaagga---aaaagtgaagattgTGAGACCGGAGAATATGCCAGTTACTCCACCAAATTACTTCGAAGGAACACTTTATGGATGCATAGTCGCTGTGATGGCAAGTGGTGGGA
i caePb3.Scfld02_0     I 17 I 2341
e cb4.chrX             9142874 5804 + 21540570 I

a score=1883.000000
s ce10.chrX            4012899 32 + 17718866 TACAACCAATTTTGGACAAATACAACGGTGAG
s caeRem4.Crem_Contig0 1045662 32 -  4500979 CTGCAGGAACCCTTGCAGAGTATAACAGTTAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6014989 32 + 20921866 CACAATCAGTCCTTGATGAATATGAAAgtaag
i caeSp111.Scaffold630 C 0 I 2890
e caePb3.Scfld02_0     2320869 2341 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=96.000000
s ce10.chrX            4012931 19 + 17718866 TGTACTTATTTTGGAAATT
s caeRem4.Crem_Contig0 1045694 18 -  4500979 TTT-TTAAATTCGAAAGTT
i caeRem4.Crem_Contig0 C 0 I 1340
e caePb3.Scfld02_0     2320869 2341 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I

a score=0.000000
s ce10.chrX            4012950 2360 + 17718866  
e caePb3.Scfld02_0     2320869 2341 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I
e caeRem4.Crem_Contig0 1045712 1340 -  4500979 I

a score=322.000000
s ce10.chrX            4015310 35 + 17718866 TTCCTCAAAGATTTTTATGTTAGAGAAAAACCGAC
s caeRem4.Crem_Contig0 1047052 25 -  4500979 TTCCtagatgatttttt----------gaacagag
i caeRem4.Crem_Contig0 I 1340 C 0
e caePb3.Scfld02_0     2320869 2341 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I

a score=5422.000000
s ce10.chrX            4015345 43 + 17718866 GAAAAGTTCTCACCTACCAGATTTGGTCTAAATACGTCACTAT---
s caeRem4.Crem_Contig0 1047077 46 -  4500979 CGAAGGTTCTCACGTTTTTGACTTGGTCATAATACGTCACTgttct
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2323210 43 +  4147112 GAGAAGTTCTCATGTCCCTAACCTGGTCACAATACGTCACAAT---
i caePb3.Scfld02_0     I 2341 I 534
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I

a score=593.000000
s ce10.chrX            4015388 20 + 17718866 TAGACTTTCCGATCAATGAT
s caeRem4.Crem_Contig0 1047123 20 -  4500979 tgaagtttttgacaaaagat
i caeRem4.Crem_Contig0 C 0 I 334
e caePb3.Scfld02_0     2323253 534 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I

a score=0.000000
s ce10.chrX            4015408 601 + 17718866  
e caePb3.Scfld02_0     2323253 534 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I
e caeRem4.Crem_Contig0 1047143 334 -  4500979 I

a score=288.000000
s ce10.chrX            4016009 8 + 17718866 ATCTATCG
s caeRem4.Crem_Contig0 1047477 8 -  4500979 ATCCAATG
i caeRem4.Crem_Contig0 I 334 C 0
e caePb3.Scfld02_0     2323253 534 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I
e caeSp111.Scaffold630 6015021 2890 + 20921866 I

a score=2515.000000
s ce10.chrX            4016017 118 + 17718866 --------ATCCACTGATAAGATGCAGAAAAGAGAAAGAACGTC-AGAGTTGAGGTCAAATCGATTTCATCAAAAGTTGTAAACAATCAGATTCGTAGT------------TCCCAAAATTCG--ATTTAGCCCATTCTGC---
s caeRem4.Crem_Contig0 1047485 129 -  4500979 --------ATTCACC----GGGGACAGATAGTGAAAAGAACGGC-GCAATCGAGGTCATACGATTAAAAGCGAAAATCGTAAACAAATCGAACCACAACAATCGTCATCGATGGAGAAAACCG--GAGAAAGgacttgaaaaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6017911 138 + 20921866 ATCCAATGATTCATC---AAAGAACAGATAGCGAAAAGAACGGCGGCAATTGGGGTCATACGACTTTTAGCGAAAA-CATAAACAAAGCAAATCGCCAC-GCCATCATTCATCCCAGAAACCGGAGAGAAATAACTTGTGCGA-
i caeSp111.Scaffold630 I 2890 C 0
e caePb3.Scfld02_0     2323253 534 +  4147112 I
e cb4.chrX             9142874 5804 + 21540570 I

a score=102712.000000
s ce10.chrX            4016135 400 + 17718866 TGCAAGCGTGCTCTACCGGTGTTTTTTGTTCGTCTCTTTTGTCGTTCCTCTCAAGCTATCCGTAGTTCAAATAGAATGTCACCATTTCTCACTCATTCGGTCACGCCTCGAACCAC--AGCCCTCTCTCCCGG---------CCGCCGCGCA---CTACAATTCGTCTCTTTCTCTCTTTTCTCATCGCGTTCCATTTGCTTCATCTTT---TTTTCTTCTCCTTCTCTTTTTAGTT----GAGAATGCAGCAGC---------AGCACCAGTAGTAGTAGCAGAGA-GAGAGACACACAGAGTCAT------------------------TTGCTCAGTTTTTT----TGTTTACTTT------CATTGTCATTTAAAATTGCAAACC----CAAACGCGCACCTATATATTTTGTACGG----AATATTTTCATTTTT-----------------CAAAAAAAATTTCTCGCTTTTGAATACTGTTAT-------
s cb4.chrX             9148678 398 + 21540570 tgcaaaggTGCTCCACCGATGCCTCGT-----------ATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCG-ACCCCCGGTCCTTCTT---------------TTCCTGCGCGCCTCTACAACTTGTCTC---------TTTCTCATCGCGTTCCATTtgctttatcttt---ttttttgcttc------------ctcGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGA---GAGAGGCCAGCAgactttcttttct------------------tttcttcctttttttccgtgtttacttt---aatcattttcattt----ctGCACTATGATGCACTC-CG------TATCTTTTGTACTT---TAATTTTAggattcccgaatttctgaaattttcgaaccgAGTTTTAAGGTTATTAATTGTTGT----------
i cb4.chrX             I 5804 I 37
s caeRem4.Crem_Contig0 1047614 361 -  4500979 tgcaaacgtGCTCTACCGGTGTCCCTTCGGC---gctcagtttttttcttccaagaTATCCGTAGTTCAAATAGAATGTCGCCATTTCTCACTCATTCGGTCACGCTTCG-ACCTC--GGCCCTCTC---------------TCGTTGCGCG---CTACAacttgtctc--------ttttctctccgcGTTCcatttgcttcttcttt---tttctatttcc------------ct----GAGAATGC---------------AGCAGCAGCAGTAGCAAAGAAAACGAGAGGC---CAgagtctctttttt------------------tttccttccttttttccttgttCATGTTTACATTCATTGTCATTC-AAATTGCACTCT----CAACT-TT------TATCTTTTGTACTC---T-GTGATATCATTCCC------------------AATTGAGATCTAGATTTA--GATTTT-------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6018049 386 + 20921866 TGCAAACGTGCTCTACCGGTGCCCCTTCagtccttttttcttttcttcccctGAGCTATCCGTAGTTCAAATAGAATGTCGCCATTTCTCACTCATTCGGTCACGCTTCA-ACCTC--aaccctctctctctctctctcttttcgctGCGCA---CTACAACTTGTGTC--------TTTTCTCATTGCGTTCcatttgcttcttctttttcttcttcttttc-----------gct----GAGAAT---------------------GCAGTagtagaaaagagaa-aggagg----CTGAgtctcttctctcattt-------------tctctcgtttctttttcgtgtTTACTTT------CAATGTCATTC-TAATTGCACACC----CTATC-CGTACCTTTATCTTTTGTACCC--TTATTATCATCACTTTT-------------------------ATCAGAATTCTATGAACACAATAATACA----
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2323787 385 +  4147112 TGCAAGTGTGCTCTACCGGAGcccttccaat---------tttttcactcCCAGGCTATCCGTAGTTCAAATAGAATGTCGCCAATTCTCACTCATTCGGTCACGCCTCG-ACCTC--GGCCCTCTC---------------TAGTTGCGCA---CTACAACTTGTCTC--------TTTTCTCATCGCGTTccatttgcttcttcttt---tttctatttct-----------act----GAGAATGA---------------AGCAGCAGCAGTAAGAAAAAAGG-CAGAGG----CCGagtctcttttctcatttatctctctctctctttctcatttcttgtTCGTGTTTACTTT------CATTGTCATTC-TAATTGCACACC----CAATC-TGTACCTTTATCTTTTGTACCCTTTTATTGTCATCATTCTT------------------------GGTCTAGATTTCTCGATTATGAGAAAACATGAT
i caePb3.Scfld02_0     I 534 C 0

a score=-2665.000000
s ce10.chrX            4016535 41 + 17718866 --------------GCTCCTTACCATAAGC--------------------GAGTATATCATTTTGTTGGTGCTCT
s caeRem4.Crem_Contig0 1047975 73 -  4500979 ATTCCGTTGAACCAAAACACAATCCGATGTTACGAACACATGTGAACTGTGAAAAAGT--TGTCCTCAATGCTCG
i caeRem4.Crem_Contig0 C 0 I 2
s caeSp111.Scaffold630 6018435 55 + 20921866 --------------AATTCTGATCAGAAATC-----CAAAGATGAACGATGTATATAT-CTGTTCCCATTgctcg
i caeSp111.Scaffold630 C 0 I 2
s caePb3.Scfld02_0     2324172 54 +  4147112 --------------AGATGTGACCATAGAT-------GTAGACGAACAGTGTGAAGATATTGTTCTGAATGCtcg
i caePb3.Scfld02_0     C 0 I 2
e cb4.chrX             9149076 37 + 21540570 I

a score=69810.000000
s ce10.chrX            4016576 591 + 17718866  
s cb4.chrX             9149113 764 + 21540570  
i cb4.chrX             I 37 I 62
s caeRem4.Crem_Contig0 1048050 748 -  4500979  
i caeRem4.Crem_Contig0 I 2 C 0
s caeSp111.Scaffold630 6018492 746 + 20921866  
i caeSp111.Scaffold630 I 2 C 0
s caePb3.Scfld02_0     2324228 697 +  4147112  
i caePb3.Scfld02_0     I 2 C 0

a score=-8192.000000
s ce10.chrX            4017167 66 + 17718866 TTTTCCATTTTAAAAGTGGACTGCGG------CATGTGGGGAAATTATTAAAATTTAGTCCTGTAAAGGTAA
s caeRem4.Crem_Contig0 1048798 30 -  4500979 --TACTACAACATTGGTGAGATCAAAATTGTC----------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6019238 13 + 20921866 -------------TGGTTGACTAGGT----------------------------------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2324925 18 +  4147112 --------TTTGTTGGTGAACTGGGG----------------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9149877 62 + 21540570 I

a score=-61063.000000
s ce10.chrX            4017233 265 + 17718866 AATGACCAAAAATTTCAGAATAATTTGTTTTAATTTTGAAAATGTTCTGTTTCGAGTTAAAAAAAAAGAGGGTTGCTG----GGATGAT-----TGAACCCCTACAATATGGAAATATAAG----------------------------------TTTAAAAAACTAAGAGATAAAACTAAAATAAAACTTTTTTTGATCAACGACTTC----CAAAAAAATT---------------------------------GGAATCGC--------------------ATTTTGACTTGAAATAAAAAGTGTTCCTATATGTTT------------TGTAAAGT--TTTATTATCTTCTTAGGTCATTTTCGCA---TCGTGAAAA---------------
s cb4.chrX             9149939 335 + 21540570 ATTAACTAGAAATTTGAcgagtttttcttcttatatTTAA---------TCTCGTGT---GTAGCAGGAATGTTcggatttgaatttgaagtttcgaaaatatagaaaacacaaaaaaaattagataaagATACGGAACGaatttttgcgaaatattt------tttcagaatgagattccgaccagaattttccccatt-----ttttgaaattataccCTTTTCAACCACCTTGTGTAAAAAGCGCATGCAAAAAGCTTCTTGCGGGTCTCGAGCGGAGCACCTTTCTGCTT-------------TTAAGacgttttc------------caaaacttttgtcaatt--------------ttttgcgCATTTataatggaaaaatgaaattccc
i cb4.chrX             I 62 C 0
s caeRem4.Crem_Contig0 1048828 140 -  4500979 AGCAACTAAAGA----------------------------------------------------------------------AATTTAA------GAGCATTCAGAACAC---------------------------------------------TCT------CTTCTA--------------------TCtctccatt-----cttt----ttttgccATT---------------------------------GGCTTCTT--------------------TTTGTTGCTG-------------TTCCGATAAATCC------------CGGA------TTTAATA--------------TTTCGTG---TTATACATGCAGAgtgattttcca
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6019251 138 + 20921866 AGTAACAAGAAATGCCAAC----------------------------------------------AAGTATTTTGAGA----ACATTCA------GAACA--CAcgcttc---------------------------------------------tct--------------------------------tttcattatc-----tttt----ttcgagaaga---------------------------------cg----TG--------------------TATTCTTGTG------------GTTACGCTAAGTTCAATC--------CCTA------TTTGATA--------------ATCCGTG---TCATGCAAA---------------
i caeSp111.Scaffold630 C 0 I 36
s caePb3.Scfld02_0     2324943 155 +  4147112 GAGAACAAGAGTTGTCAGCAACt-----------------------------------------aaagaaatttgaga----agatttc------GAACACTCTCACTTC---------------------------------------------TTT------CTGCTA--------------------TCTTCctatc-----tttc----tttttgctgA---------------------------------CTCCTCTC--------------------TCTTTCACTG-------------TTCCGTTAAATCCAATCCGGATTTTCATA------TTCTATA------------------------TTATACGAA---------------
i caePb3.Scfld02_0     C 0 I 19

a score=-9721.000000
s ce10.chrX            4017498 54 + 17718866 -----------------TAATTTTGAAGTATTTCCCCGGCAGTAGTCCACCTTTGCCCAGAAAAGG------------------------CTCAA
s cb4.chrX             9150274 75 + 21540570 --acattccgaaattttttaattttaagaatt------------------ctgaatcccgaaaatcaaaaaaaaaatttgaaaaagacaTTCCGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1048968 38 -  4500979 --ttttcccg----cttttatgttgaaaaatg---------------------------gaaaatc------------------------ctCGA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2325117 26 +  4147112 TCTCCTCCCA----CTTTGAtt-------------------------------------gaaaacca----------------------------
i caePb3.Scfld02_0     I 19 C 0
e caeSp111.Scaffold630 6019389 36 + 20921866 I

a score=14454.000000
s ce10.chrX            4017552  840 + 17718866  
s cb4.chrX             9150349 1094 + 21540570  
i cb4.chrX             C 0 I 54
s caeRem4.Crem_Contig0 1049006  741 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6019425  774 + 20921866  
i caeSp111.Scaffold630 I 36 C 0
s caePb3.Scfld02_0     2325143  775 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=-2867.000000
s ce10.chrX            4018392 41 + 17718866 ATATGCAGGAATTCGAACATGCAATAGTGCTATACATATTT
s caeRem4.Crem_Contig0 1049747 17 -  4500979 ------------------------TAGGACtttacattttt
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6020199 23 + 20921866 ------------------ATTCGAAGAAGTTTTAAATATAG
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2325918  9 +  4147112 --------------------------------TTAATATCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9151443 54 + 21540570 I

a score=56019.000000
s ce10.chrX            4018433  967 + 17718866  
s cb4.chrX             9151497 1061 + 21540570  
i cb4.chrX             I 54 C 0
s caeRem4.Crem_Contig0 1049764  828 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6020222  711 + 20921866  
i caeSp111.Scaffold630 C 0 I 139
s caePb3.Scfld02_0     2325927  811 +  4147112  
i caePb3.Scfld02_0     C 0 I 4

a score=-6534.000000
s ce10.chrX            4019400 41 + 17718866 AATTCACTTTTAAAATGAAGTGTGACTTATGCTTGGTGCAA-------------------
s cb4.chrX             9152558 27 + 21540570 ----------GAAAATCAAA----GGGTATACTGTAGTCAG-------------------
i cb4.chrX             C 0 I 56
s caeRem4.Crem_Contig0 1050592 29 -  4500979 ----------ATGGCTCAAG--ATATATATATGGAAATCAA-------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2326742 53 +  4147112 -----actccaaaaaaaaaa--tggaatgtacaggacacattttctgataattttctgga
i caePb3.Scfld02_0     I 4 C 0
e caeSp111.Scaffold630 6020933 139 + 20921866 I

a score=-6623.000000
s ce10.chrX            4019441 127 + 17718866 AAATGTGTTCAGTGTTTGATTTTTAGTTTTGAA---CTTGGAACACTCTACAAGTTTAGGAGAATACGCAACGTTAAAAAACT------AGACTAGAT----TCAATTTC---GATATCTATGTCataaattataa---aaaaaaa----------
s caeRem4.Crem_Contig0 1050621 130 -  4500979 AAACGTAA-TAATATTTGA------------GAACtctgagaaaa---taatttttctgaaaaataattataccTAGAAAGTAGTGTTGTGACTTGTGACGCTGAACATCTACGATGTTTGAATTCTAGTTTGAAACCTAcgaaac----------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2326795  96 +  4147112 aaatgtagTTAAAATTTGA------------AG---CTGATAAGA--------------------------------GAAGTA------TGCCTTGTG----TTCATATC-AAAATGCTTTAGGTGTA--TAGTAATCTCGAAAACGTGCAGCaag
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9152585  56 + 21540570 I
e caeSp111.Scaffold630 6020933 139 + 20921866 I

a score=197800.000000
s ce10.chrX            4019568 345 + 17718866 caaatttt-taGGGTAACATTCAAAGCGATAAGAAATACGACAAGGCGCTGGATGAGGTTAGCAAGAACGTCGCTATGATCAAGTCATTTATCTATGGCAACGACTCTGCCGAGCCAAGCAGCGAGCATGTCGTCCAAGTCGCTCAACTTGCTCAGGAGGTGTACAACGCAAACATTCTGCCGATGCTCATCAAGATGCTGCCAAAGTTTGAGTTTGAGTGCAAGAAGGACGTCGGGCAGATCTTCAACAACTTGCTTCGTCGCCAAATTGGAACTCGATCCCCAACTGTTGAATATCTGGGTGCTCGGCCTGAAATTCTGATCCAGCTGGTCCAAGGGTATGTG-T-------
s cb4.chrX             9152641 353 + 21540570 -CCATTTTCCAGGGTAACGTCGTAAGTGACAAGAAATACGACAAATCAGTGGAGGAAGTTGCTAAAAATGTTGCtctgatcaaaaatttgatctatGGAAACGAAGGATCAAATTCGGAAACGGACCATGTCGTCCAAGTTGCTCAACTCGCCCAAGAGATCTACAATGCCAATATTCTTCCAATGGTAGTCAAGATGCTccccaaatttgaattcgagTGTAAGAAGGATGTcggtcaaattttcaacaaccTGCTCCGTCGCCAAATTGGAACTCGATCCCCAACAGTCGAGTATCTTGGAGCACGACCGGAAATTCTAGTTCAACTTGTTCAAGGGTACATTACCTGGCGT
i cb4.chrX             I 56 C 0
s caeRem4.Crem_Contig0 1050751 352 -  4500979 ttcatttt-taggGCAATCTTCAAACTGACAAGAAGTACGACAAAGCGCTTGACGAGGTCAGTAAAAACGTTGCGATGATCAAGTCGTTCATTTACGGAAATGACACCACTGAACCAAGCAGTGAGCACGTCGTCCAAGTTGCTCAACTTGCTCAGGAGGTGTACAATGCAAACATTCTGCCAATGTTGGTAAAAATGCTTCCAAAGTTTGAGTTTGAGTGCAAAAAAGATGTCGGGCAAATCTTCAACAATCTTCTTCGTCGCCAAATTGGAACTCGCTCCCCTACTGTTGAGTATTTGGGAGCTCGTCCAGAAATTCTCATTCAACTTGTTCAAGGGTACGTT-TCTTGCGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6021072 345 + 20921866 caaatttt-caggGTAATGTGGTAACTGACAAAAAGTACGACAAAGCATTGGAAGAAGTCAGCAAGAATGTTGCTATGATCAAAGCATTCATCTACGGAAGCGATGCATCTGAACCGAGTGGTGATCATGTTGTTCAAGTAGCTCAACTTGCTCAAGAGGTGTACAATGCAAATGTTCTACCCATGCTGATCAAAATGCTTCCAAAGTTTGAATTCGAATGCAAAAAGGATGTGGGACAAATCTTCAACAACTTGCTTCGTCGTCAAATCGGAACTAGATCCCCAACCGTTGAATATCTTGGAGCAAGACCGGAAATTCTCATTCAGCTTGTTCAAGGGTACGTT-T-------
i caeSp111.Scaffold630 I 139 I 28
s caePb3.Scfld02_0     2326891 345 +  4147112 tatttttt-cagggtCATCCGattccagacaaaaaatatgacaAGGCTCTCGAGGAAGTTAGCAAGAACGTCTCCATGATCAAGCAATTCATCTATGGAAACGATGCTACTGATCCAGGAGGTGAACATGTTGTTCAAGTAGCCCAGCTGGCCCAAGAAGTTTACAACGCAAATGTTCTGCCAATGCTGGTCAAGATGCTcccgaagtttgaatttgaatgcaaaaaagatgTTGGACAAATCTTCAATAATCTACTTCGTCGTCAAATCGGAACTAGATCCCCAACCGTTGAGTATTTGGGAGCTCGACCGGAAATTCTTATTCAACTTGTGCAAGGGTATGTT-T-------
i caePb3.Scfld02_0     C 0 C 0

a score=-4552.000000
s ce10.chrX            4019913 17 + 17718866 GACGTGGATCGCACAAT---------
s cb4.chrX             9152994 12 + 21540570 ---------CACATGCACTGC-----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1051103 17 -  4500979 ---------CACACTACTTGTTTCTA
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2327236 20 +  4147112 ----CACTTCATACGTCATACACC--
i caePb3.Scfld02_0     C 0 I 11
e caeSp111.Scaffold630 6021417 28 + 20921866 I

a score=148557.000000
s ce10.chrX            4019930 262 + 17718866 ATTTTCTCAGCAATCTCATATTTCCAGATACTCTGTTCCGGATATTGCGCTCACGTGTGGACTTATGCTCCGTGAAAGCATTCGTCATGATCATTTGGCAAAAATCATCCTCTATTCAGATGTCTTTTACACATTCTTCCTATATGTGCAGAGTGAGGT--------------------------------------------------------------G------------------------------------------------------------------------------TTCGATATCTCATCTGATGCGTTTTCGACGTTCAAGGAACTCACTACAAGGCACAAAGCAATTATTGCTGAATTCCTTGATTCGAACTATGATACTTTCTTT
s cb4.chrX             9153006 357 + 21540570 --CATCTCACGCATATCGTATTTTCAGATACACGAATTCGGATATTGCACTCACTTGTGGACTCATGCTTCGAGAGAGTATTCGTCACGACCATCTTGCAAAAATGATCCTCTACTCCGACGTCTTCTACACATTTTTCCATTATGTACAGAGTGAGGTCAGTATGGGA--------AAAGATG---------------------ATAG------------GAAA--ATCCTCTTGTTCCCTTTTGTTGGGGTCTAGGGTCCAGGCATTGTCCACATACatttaatttgatttttaggtcttCGATATTGCGTCCGATGCTTTTGCGACGTTCAAAGAACTAACGACTAGACATAAAACACTTTGTGCGGAGTTTCTCGAAACCCACTACGACACATTTTTC
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1051120 324 -  4500979 AATCTCTCACGCatatcgaaatttcagatactcTGTTCCGGATATTGCACTGACGTGTGGACTTATGCTTCGTGAAAGTATTCGTCACGACCATCTTGCAAAAATCATTCTCACATCGGATGTGTTTTATACTTTCTTCTTATATGTCCAGAGTGAGGTCAGTAATAGA--------AGAGATG-----------------TGGAATGT------------GACATCATTCTTT-----------------------------------------ATACATATAATCTGATTTGCAGGTATTCGACATTGCATCCGACGCATTCTCAACGTTCAAAGAACTGACGACTAGACATAAGGCAATTAGTGCGGAATTCTTGGATGCCAACTATGACCATTTTTTC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6021445 318 + 20921866 gttttctcacATATATCCATTTTCTAGATACTCTGTTCCGGATATTGCACTCACTTGTGGACTCATGCTCCGTGAAAGCATTCGTCATGACCATCTTGCAAAAATCATTCTCACATCGGACATTTTCTACACGTTCTTTTCATATGTCCAGAGTGAGGTCAGTA-------------AAagaag---------------------atagagagaaga----gacaAGGTTC----------------------------------------------ACATATAATCTGATTTGCAGGTATTCGATATTGCGTCCGATGCGTTTTCGACGTTCAAAGAACTTACAACAAGACACAAGGCAATTAGCGCTGAATTCCTTGATGCCAACTATGACACTTTCTTT
i caeSp111.Scaffold630 I 28 C 0
s caePb3.Scfld02_0     2327267 356 +  4147112 gttttctcacaTATATCCTCTTTCCAGATACTCGGTTCCGGATATTGCACTTACTTGTGGACTCATGCTCCGTGAAAGTATTCGTCATGACCATCTTGCAAAAATTATCCTCACATCAGATGTTTTCTATACATTCTTCTTATATGTTCAGAGTGAGGtcagtatgaaaaaaaaatgaaagaagacacggaaacaaaatgatgatATAGACAGAAAACTGCGACGGAATCC----------------------------------------------ACAAATAATTTGATTTGCAGGTATTTGACATCGCTTCGGATGCGTTCTCGACATTCAAAGAGCTGACCACCAGACACAAGACAATCATTGCGGAGTTCCTTGATGCCAACTATGACAAATTCTTT
i caePb3.Scfld02_0     I 11 C 0

a score=2064.000000
s ce10.chrX            4020192 6 + 17718866 GGTAGG
s cb4.chrX             9153363 6 + 21540570 GGTAAG
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1051444 6 -  4500979 TGTAAG
i caeRem4.Crem_Contig0 C 0 I 34
s caePb3.Scfld02_0     2327623 6 +  4147112 GGTGAG
i caePb3.Scfld02_0     C 0 I 37
e caeSp111.Scaffold630 6021763 0 + 20921866 C

a score=-7579.000000
s ce10.chrX            4020198 554 + 17718866  
s cb4.chrX             9153369 268 + 21540570  
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0     2327629  37 +  4147112 I
e caeSp111.Scaffold630 6021763   0 + 20921866 C
e caeRem4.Crem_Contig0 1051450  34 -  4500979 I

a score=0.000000
s ce10.chrX            4020752 25 + 17718866 CCAACATCTATCTGATCAAAATGAA
e caePb3.Scfld02_0     2327629 37 +  4147112 I
e cb4.chrX             9153637  0 + 21540570 C
e caeSp111.Scaffold630 6021763  0 + 20921866 C
e caeRem4.Crem_Contig0 1051450 34 -  4500979 I

a score=-1059.000000
s ce10.chrX            4020777 10 + 17718866 TTCGCTTTCA-----------
s cb4.chrX             9153637  4 + 21540570 ------TTCA-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1051484 10 -  4500979 TTTGATTGCA-----------
i caeRem4.Crem_Contig0 I 34 C 0
s caePb3.Scfld02_0     2327666 15 +  4147112 ------ttcactgtttttcta
i caePb3.Scfld02_0     I 37 C 0
e caeSp111.Scaffold630 6021763  0 + 20921866 C

a score=169193.000000
s ce10.chrX            4020787 293 + 17718866 GCTCAGTACCAAAACCTGCTCAATTCGAAGAACTACGTGACGCGTCGTCAGTCGTTGAAACTGCTCGGCGAGCTTCTTCTCGACCGTCACAACTTTAACACAATGACAAAGTACATTTCGAATCCGGATAACCTGAGATTGATGATGGAATTGTTGAGAGATAAGAGCAGAAACATTCAATATGAGGCATTCCATGTGTTCAAGGTTTTTGTTGCGAATCCAAACAAACCAAAGCCAATCTCTGACATTCTCAATCGCAATCGCGAAAAGCTGGTAGGTCGTGACGTTTTTCA
s cb4.chrX             9153641 288 + 21540570 GCTCAATACCAAAACCTTCTCAACTCCAAGAACTATGTCACTCGTCGCCAATCTTTGAAACTTCTTGGAGAGCTCCTCCTCGACCGTCACAACTTCAACATCATGCATAAATACATCTCGAATCCGGAAAACATGAGAGTTTTGATGGAGCTGTTGAGAGACAAGAGTCGCAACATCCAATACGAAGCTTTCCACGTCTTCAAGGTTTTCGTTGCGAACCCTAATAAATCGAAGCCAATCTGTGACATTCTTCTCCGCAATCGCGAGAAACTGGTAAGTT---ATCTTTCC--
i cb4.chrX             C 0 I 136
s caeRem4.Crem_Contig0 1051494 288 -  4500979 GCTCAATATCAAAATCTCTTGAACTCCAGTAATTATGTTACCCGCCGTCAGTCGTTGAAATTGTTAGGAGAACTGCTTCTCGACAGACACAACTTCAATATTATGACAAAATACATCTCGAACCCGGATAACTTGAAATTGATGATGGAGCTGTTAAGAGATAAGAGTAGAAATATTCAATATGAAGCATTCCATGTCTTCAAAGTTTTCGTAGCCAATCCAAACAAGCCAAAGCCAATTTCCGACATTCTCAACCGTAATCGTGAAAAATTGGTGAGTA---ACGTTTAG--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6021763 290 + 20921866 GCACAATATCAGAATCTTCTCAACTCAAAGAACTATGTCACTCGTCGTCAATCATTGAAATTACTCGGAGAGCTTCTTTTGGACCGTCACAATTTCAACATCATGACAAAATACATTTCAAATCCAGAGAACTTGAGATTGATGATGGAATTATTGAGAGACAAGAGCAGAAACATCCAATATGAAGCATTCCATGTGTTCAAAGTGTTTGTTGCCAATCCAAACAAACCAAGACCAATTTCGGACATTCTCAATCGCAATCGCGAAAAGCTGGTGAGTT---ACTCTTTTGC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2327681 290 +  4147112 GCCCAATATCAAAACCTCTTGCTCTCATCCAACTATGTGACTCGCAGACAATCGTTGAAGTTGCTTGGAGAGCTTCTCCTTGACCGTCATAACTTCAACATCATGAACAAATACATTTCCAACCCAGAGAACTTGAAGTTGATGATGGAGTTGTTGAGAGACAAATCGAGAAACATCCAGTACGAGGCTTTCCACGTTTTCAAAGTGTTCGTTGCTAACCCAAACAAACCACGAGCCATCTCTGACATTCTCAATCGCAATCGCGAGAAGCTGGTGAGTT---AATCCTCTCA
i caePb3.Scfld02_0     C 0 C 0

a score=-16819.000000
s ce10.chrX            4021080 163 + 17718866 TCTGCTTGTT--TCAAAGTTTTTATATTTATTTCCTTGGGGTATTAAAAG---TTGCAAAAGTCACAAAAATCACAAGATAATGCCAAGTTTCTAGAATACATAAAA------CATGGGACGACATCAATGAAGTTTTAGAAATCGAGAA----------GTTTTATGAGCTA--------------ATGCTTG---ATTC--------------
s caeRem4.Crem_Contig0 1051782 135 -  4500979 TCGTTTTACTAATTAG-----------------TTTT-------------------------CCCCTGAAACC-----------CCATATTGGCAGT-CATAGAAAC------GAAACGATAAAAGTAATTAG---------AACCAAAAGAATTCCATTGTGTCACATGAAACACaaacaagaaagaaacttT---AATGGGAATT--------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6022053 155 + 20921866 CTTCTTGAAC--tttg-----------------ttctggaaaaaaagaag-------aaaagtcgCGTAGATCATGA-------CTATTCCTTTGATGCATGTGAACC-----GACAgggcagaaaaaagaac----------ccGGAAATCATTCGA--CTGTCAcgtgaaa--------caaaaaaaacctatCAAATCAAAGTAATGGA--C
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2327971 187 +  4147112 TCTTTtggtt--tcgg---------------ttttttgaaaaaaaaaaaaacaaagcaaaagtCACGGACATCATGA-------CCATATCTCTAATGCATGTGAACTAGTGAGAAGAGGGAAGAGGAAGAACATAATA-CAAACTAGAACTATTTTG--GTGTCACGTGAAAACAGGGAGAAAAGGAAACCCATC-AATTAAAGTAATGGATTC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9153929 136 + 21540570 I

a score=88474.000000
s ce10.chrX            4021243 147 + 17718866 TTACAGGTGGAGTTTCTCAGCGAATTCCACAACGATAGGACTGATGATGAGCAGTTTAACGACGAGAAGGCGTACTTGATCAAGCAAATTCAGGAAATGAAATCATCTCCAAAAGAAGCGAAAAAGCCAAAGTCAAAGGAA---------------------GATGAG
s cb4.chrX             9154065 147 + 21540570 tttcaggtCGAATTCTTGGGCGAATTCCACAACGACCGTACCGATGACGAACAGTTCAATGATGAGAAGGCCTACCTGATAAAGCAGATTCAAGAAATGAAGGGGTCTCCAAAGGAAGCCAAAAAGCATAAGACGAAGGAG---------------------GACGAG
i cb4.chrX             I 136 I 28
s caeRem4.Crem_Contig0 1051917 147 -  4500979 TTGCAGGTCGAGTTTCTAGGAGAATTTCACAACGACCGTACTGATGATGAACAGTTTAATGATGAGAAGGCGTATCTAATCAAGCAAATTCAAGAGATGAGATCATCGCCAAAGGaaccaaaaaagcaaaaaccaAAGGAA---------------------GAGGAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6022208 168 + 20921866 TTGCAGGTTGAATTCCTTGGCGAATTCCACAACGACAGAACTGATGACGAACAATTCAATGATGAGAAGGCATACTTGATCAAACAAATTCAAGAGATGAAATTCTCTCCAAAAGAAGTTAAGAAACacaagaaagaggaagaacaTCCAGTGGTTGTTCCCGAAGAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328158 147 +  4147112 TTGCAGGTCGAGTTCCTTGGCGAATTCCACAACGATAGAACTGATGACGAACAATTCAATGATGAGAAAGCCTATTTGATTAAACAAATCCAAGAGATGAAGGGCTCTCCAAAAGATGCTAAGAAGCAGAAAGCAAAGGAG---------------------GATGAA
i caePb3.Scfld02_0     C 0 C 0

a score=-5975.000000
s ce10.chrX            4021390 13 + 17718866 ----------------AATCAGGAACCCG------------
s caeRem4.Crem_Contig0 1052064 14 -  4500979 ---------------------------CACGCAGGACCTCA
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold630 6022376 27 + 20921866 CCAGCTCGTGTAGAGGAGTC--GAAGCCA------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328305  6 +  4147112 C-----------------------AGCCA------------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9154212 28 + 21540570 I

a score=6221.000000
s ce10.chrX            4021403 28 + 17718866 CT-----GGACCATCC--GAGGGACCATCCACTTC
s cb4.chrX             9154240 25 + 21540570 TTG---CTGACCCGAC-------ACCATCCACTTC
i cb4.chrX             I 28 I 72
s caeRem4.Crem_Contig0 1052079 35 -  4500979 TTGGAAGTGACCACACCGGAGGGGCCATCTGCTTC
i caeRem4.Crem_Contig0 I 1 I 22
s caeSp111.Scaffold630 6022403 23 + 20921866 -------GGACCATCC-----GGCCCATCAACTTC
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328311 26 +  4147112 -------GGACCATCT--GAGGGACCATCTACTTC
i caePb3.Scfld02_0     C 0 C 0

a score=207.000000
s ce10.chrX            4021431 1 + 17718866 C
s caeRem4.Crem_Contig0 1052136 1 -  4500979 C
i caeRem4.Crem_Contig0 I 22 C 0
s caeSp111.Scaffold630 6022426 1 + 20921866 C
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328337 1 +  4147112 T
i caePb3.Scfld02_0     C 0 I 119
e cb4.chrX             9154265 72 + 21540570 I

a score=767.000000
s ce10.chrX            4021432 6 + 17718866 CAATGA
s caeRem4.Crem_Contig0 1052137 6 -  4500979 CATCGA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6022427 6 + 20921866 CAACAA
i caeSp111.Scaffold630 C 0 I 72
e caePb3.Scfld02_0     2328338 119 +  4147112 I
e cb4.chrX             9154265 72 + 21540570 I

a score=-734.000000
s ce10.chrX            4021438 51 + 17718866 GCTCTTTGAAAC-TTAAATTAAATTT-TCTGCAAAAACAAAAACTTCTTGT--------------GC
s caeRem4.Crem_Contig0 1052143 67 -  4500979 CTTCCAAGGCACAATAGATCAAATGTATTTCCAAAAGTCACAAGTAACTGTATCACTCACAAACCGT
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2328338 119 +  4147112 I
e cb4.chrX             9154265 72 + 21540570 I
e caeSp111.Scaffold630 6022433 72 + 20921866 I

a score=-823.000000
s ce10.chrX            4021489 12 + 17718866 ---------ATAGGATCCCGG
s caeRem4.Crem_Contig0 1052210 13 -  4500979 CTAGCGGTTATAA--------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2328457 12 +  4147112 ---------ATAGGATCACTT
i caePb3.Scfld02_0     I 119 C 0
e cb4.chrX             9154265 72 + 21540570 I
e caeSp111.Scaffold630 6022433 72 + 20921866 I

a score=650.000000
s ce10.chrX            4021501 13 + 17718866 ------------------------------------TCT--------------TGATTATTAT
s cb4.chrX             9154337 13 + 21540570 ------------------------------------TCT--------------TGATTATTAT
i cb4.chrX             I 72 C 0
s caeRem4.Crem_Contig0 1052223 13 -  4500979 ------------------------------------TCA--------------TGATTATTAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2328469 63 +  4147112 TATTTTGTCACAATTTGAGTTCCACTCACAAACTGTTCATTAGCCATAATAACTGATTATTAT
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6022433 72 + 20921866 I

a score=4110.000000
s ce10.chrX            4021514 8 + 17718866 ATAATCGC
s cb4.chrX             9154350 8 + 21540570 ATAATCAC
i cb4.chrX             C 0 I 103
s caeRem4.Crem_Contig0 1052236 8 -  4500979 ATAATCAC
i caeRem4.Crem_Contig0 C 0 I 4
s caeSp111.Scaffold630 6022505 8 + 20921866 ATAATCAC
i caeSp111.Scaffold630 I 72 C 0
e caePb3.Scfld02_0     2328532 0 +  4147112 C

a score=-10488.000000
s ce10.chrX            4021522 103 + 17718866 AATCGCCAATGTCAATCGCATTT--AATTGTTTATTTTCTAGAAT-----ATATTTTTTC----AA------AACTTTTTTTGGGTGTACAACTCTCC---AGT-------TCAGTTCAAAA---ATTTTCAA-------------
s caeRem4.Crem_Contig0 1052248 101 -  4500979 -------------------------AAGCACCTATT---TAGAACTTGATAAGTTTCTTTTCTCAAGTATATTGATCCCCATTGGT-----AATCTTTTGGTCT------TTCGATTTTAATCCGATATTAAATT------GTCAA
i caeRem4.Crem_Contig0 I 4 I 10
s caeSp111.Scaffold630 6022513 119 + 20921866 GATTACTG--GATAATCACTCTTAAAACCA-TTGTT---TAGAAA-----AACTAACACT----AGGCTTATGGAACCTTTTCGATGCATTAATCTTT---TCT------ATCAAGTTTAGA---ATATTCATTGTCTAGGGTCTA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328532 117 +  4147112 -----------ATAATCACTTTT--ACCCACTTGTT---TAGGACTTGATAAGTTACATT----AG---CATGACTCCTTGAATGTACATAAATGTCT---CCTAGTAACATCAAATTGAGT---GCATTACTTTTCTAGGgtcaa
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9154358 103 + 21540570 I

a score=109.000000
s ce10.chrX            4021625 9 + 17718866 TTCTTGCTG
s caeSp111.Scaffold630 6022632 9 + 20921866 TCTTTTTAT
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328649 9 +  4147112 cttttccat
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9154358 103 + 21540570 I
e caeRem4.Crem_Contig0 1052349 10 -  4500979 I

a score=-325.000000
s ce10.chrX            4021634 16 + 17718866 T----ATGGTGGAGTGTTGC
s caeRem4.Crem_Contig0 1052359 16 -  4500979 T----ATTGCGAAGGGGTTC
i caeRem4.Crem_Contig0 I 10 I 20
s caeSp111.Scaffold630 6022641 20 + 20921866 TAACAACAACTGAgggtttc
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328658 16 +  4147112 t----ttaaCTGATGCTTTG
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9154358 103 + 21540570 I

a score=12834.000000
s ce10.chrX            4021650 113 + 17718866 AA----AGATTTTAGTTTGTTTTTTTTTTAAATTTTGCCTCG-----ATACCTTCAGTCATGTTCT-TAAA---------ACTTCCGTTCACACTTCGCTTATTTTCATTCACACCCACGCTACCATTTTC-C
s cb4.chrX             9154461  97 + 21540570 AA----ACATTTTCGCT-----------tacttttcgtttttaaaaaataccttCAATCATGTTCTAATTAAGATATGTCACATTTATTTTCA----------------TAACA---ACTTTACCATTTTT--
i cb4.chrX             I 103 C 0
s caeRem4.Crem_Contig0 1052395  86 -  4500979 GA----TTATTTTGTCCGA---------TGATTTCCATTTCT-----GTACCGTCAACCATGTTCT-ATTA---------ACTTCCGTTTTCA---------------TTCACA---ACCCTACCatttttt-
i caeRem4.Crem_Contig0 I 20 I 19
s caeSp111.Scaffold630 6022661  99 + 20921866 aaaaacacattttccgC-----------CATTTTTCGCTTCT-----ATACCTTCAAACATGTTCT-AACA---------ATTTCCGTTTCCACTTCGCTTA--TTAATTCACA---AACCTAACATTTT---
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328674  91 +  4147112 CA----ATATTTTTGGC-----------CTGATTTCGCTTTT-----ATACCGTCAACCATGTTTT-AATA---------AC-----TTTTCACTTCGCTAA--ATAATTCACA---ATCCTACCATTTTC--
i caePb3.Scfld02_0     C 0 C 0

a score=-4155.000000
s ce10.chrX            4021763 27 + 17718866 AAAG--ATTAAAATTCAACTGATCCCCCA---------
s cb4.chrX             9154558 31 + 21540570 ATCG--ATTAC-----TATCGAACATCCTGTCTTCCAC
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6022760 25 + 20921866 ATCGGTGTTTC--TTCCACCGAAC--CTT---------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328765 21 +  4147112 ATCG--GTTCC--CCGTACCGA----CCT---------
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1052481 19 -  4500979 I

a score=130011.000000
s ce10.chrX            4021790 719 + 17718866  
s cb4.chrX             9154589 948 + 21540570  
i cb4.chrX             C 0 I 33
s caeRem4.Crem_Contig0 1052500 682 -  4500979  
i caeRem4.Crem_Contig0 I 19 C 0
s caeSp111.Scaffold630 6022785 705 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2328786 707 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=273.000000
s ce10.chrX            4022509 1 + 17718866 T
s caeSp111.Scaffold630 6023490 1 + 20921866 T
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2329493 1 +  4147112 T
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9155537 33 + 21540570 I
e caeRem4.Crem_Contig0 1053182 0 -  4500979 C

a score=91.000000
s ce10.chrX            4022510 1 + 17718866 T
s caePb3.Scfld02_0     2329494 1 +  4147112 T
i caePb3.Scfld02_0     C 0 I 29
e cb4.chrX             9155537 33 + 21540570 I
e caeSp111.Scaffold630 6023491 0 + 20921866 C
e caeRem4.Crem_Contig0 1053182 0 -  4500979 C

a score=0.000000
s ce10.chrX            4022511 747 + 17718866  
e caePb3.Scfld02_0     2329495  29 +  4147112 I
e cb4.chrX             9155537  33 + 21540570 I
e caeSp111.Scaffold630 6023491   0 + 20921866 C
e caeRem4.Crem_Contig0 1053182   0 -  4500979 C

a score=432.000000
s ce10.chrX            4023258 7 + 17718866 ttatttt
s caeSp111.Scaffold630 6023491 7 + 20921866 TTATTTG
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2329495 29 +  4147112 I
e cb4.chrX             9155537 33 + 21540570 I
e caeRem4.Crem_Contig0 1053182 0 -  4500979 C

a score=-1488.000000
s ce10.chrX            4023265 20 + 17718866 agaatttaaaaa---aaaaCTTG----
s caeRem4.Crem_Contig0 1053182 23 -  4500979 AGACTTCAAAGATCTAAAACTAT----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6023498 18 + 20921866 ---------AGATTCATTACAAAAAAG
i caeSp111.Scaffold630 C 0 C 0
e caePb3.Scfld02_0     2329495 29 +  4147112 I
e cb4.chrX             9155537 33 + 21540570 I

a score=-3625.000000
s ce10.chrX            4023285 14 + 17718866 AAACCATGCAAAAA--------
s caeRem4.Crem_Contig0 1053205 14 -  4500979 --------AAAatatgaattat
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6023516  4 + 20921866 ----------------AGTA--
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2329524 20 +  4147112 aatccatctgaaaatgattt--
i caePb3.Scfld02_0     I 29 C 0
e cb4.chrX             9155537 33 + 21540570 I

a score=244408.000000
s ce10.chrX            4023299 428 + 17718866 TTTCAGGATGGACAAAATCAAATAATTGAAGTGAACGCCTGGCTTAAATATGTGAG-----TCATTT----AGTCA---------T-----CTTGCTTTAAAAATTCCACTATTTTTCACAGGTTTGGATGGATTACCGCCTTCAATGGGACCCCCTCCAGTATGATAACATAACCAGTATTAGATTTGCGGGTGGTGAAAATCAGATCTGGAGGCCTGACATACTTTTATATAACAGTGCAAGTGAAGACTTTGATTCGTCGTTCAAGTCCAACGAAGTTGTTTATAATACGGGTGAAGTTAATTGGATTCCACCGGGTATTTTTCGGGCTAGTTGTAAGATGGATATCACCTACTTTCCTTTTGATGACCAAGTTTGCTACTTGAAATTTGGTTCCTGGACCTATCATGGTCTCGCGCTGGATTTAAGTATTATTGCAGAAGAAGACGA
s cb4.chrX             9155570 426 + 21540570 tttcaggatggaCAGAATCAAATCATTGAAGTCAACGCCTGGCTGAAATATGTATG-----gctcaacaaaaattt---------tc----cttttttcaaaatcagta---tTTT----AGGTGTGGATGGATTATCGTTTGCAGTGGGACCCTTTACAATACGACAACATCACTAGCATTCGTTTTGCTGGTGGTGAAAATCAGATATGGAGACCTGATATTCTACTTTACAACAGTGCCAGTGAAGATTTTGACTCATCTTTCAAATCCAATGAAGTCGTTTATAATACCGGAGAGGTTAATTGGATACCGCCGGGCATTTTTCGAGCCAGTTGTAAAATGGATATTACTTATTTTCCGTTTGATGATCAAGTTTgctatttgaagtttggatCTTGGACTTATCACGGGTTAGCATTGGACTTGAGTATTATTgcggaagaagatga
i cb4.chrX             I 33 I 155
s caeRem4.Crem_Contig0 1053219 422 -  4500979 tttcaggatgGACAAAACCAGATAATAGAAGTCAACGCCTGGCTCAAATACGTATG-----TTCT--------CTT---------TCGTTACTTGTTTTAACTAAGATT---TTTT----AGGTTTGGATGGATTACCGTTTACAATGGGATCCGTTACAGTATGACAATATTACAAGTATCCGATTCGCTGGCGGTGAAAACCAAATCTGGAGACCTGATATATTGCTTTATAATAGTGCTAGTGAAGACTTTGACTCGTCTTTCAAATCCAATGAGGTCGTTTATAACACCGGAGAGGTTAATTGGATTCCTCCGGGCATTTTTCGCGCAAGTTGCAAAATGGATATCACCTACTTTCCTTTCGATGATCAGGTATGTTATTTGAAATTCGGTTCTTGGACATATCACGGGTTGGCCCTGGACTTGAGTATCGTAgctgaagaagatga
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6023520 428 + 20921866 TTTAAGGATGGCCAAAATCAGATTATAGAAGTAAATGCCTGGTTAAAATATGTATG-----TGTCTTCACATGTGT---------T-----CTATTCCGTATAACTATTCAATTTG----AGGTTTGGATGGACTACAGGTTACAATGGGATCCACTGCAATATGACAATATCACAAGCATTCGATTTGCTGGtggagaaaatcaaatatgGAGACCCGATATATTACTGTACAACAGTGCAAGTGAAGATTTCGACTCATCTTTCAAATCCAACGAAGTAGTATACAATACAGGAGAAGTCAATTGGATTCCTCCaggaattttcagagcaaGTTGTAAAATGGATATCACTTATTTTCCATTCGACGATCAAGTATGTTACCTGAAATTTGGCTCTTGGACTTATCATGGACTAGCTCTGGATTTGAGTATAATTGccgaagaagatga
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2329544 432 +  4147112 tttcaggatggaCAAAATCAAATCATCGAAGTCAACGCTTGGTTGAAATATGTAAGATTAATCTCTTCCGAAGTATAGTAATAGAT-----CTTTTACGAAT----------TTTT----AGGTTTGGATGGATTACCGTTTGCAATGGGACCCCCTTGAGTATGATAACATTACAAGTATTCGATTTGCGGGtggagaaaatcaaatttggagacCCGACATTTTATTGTACAACAGTGCTAGCGAAGATTTTGATTCCTCTTTCAAATCCAATGAGGTTGTCTATAATACCGGAGAAGTGAACTGGATCCCACCAGGAATCTTCAGAGCAAGTTGTAAGATGGATATTACATACTTCCCATTTGATGACCAAGTTTGCTATTTGAAGTTTGGTTCTTGGACTTACCACGGGTTAGCATTAGATTTGAGTATTATtgcagaagaagatga
i caePb3.Scfld02_0     C 0 C 0

a score=58848.000000
s ce10.chrX            4023727 195 + 17718866 TTCAGGTTAAAAAAATAGACAGCA---------TATTGAAAAT----------------------------CTTCTAAATAATT----------------------GTTGTTT---------------------------------------------------------------------------------AGAGTTATCAATTGACTTATCCACATACACCCCTAGTGGCGAATGGCATTTGACAAAAGCTCCCGCAGTCAAGGATGTGAAGTACAATTCGTGCTGCAAAGAACCATATTCTACAGTCACATTTTACATGTTCCTAAGGTA--
s cb4.chrX             9156151 331 + 21540570 TTCAGATC----AAACGGATGAATGATAAGTATTATTTTAAACCCAGAGTGGACCATTTTCCAATTAAATAGTCCTCTTCAAATAGAATTCTGGCGAACACTGTAAGTCGTTTGTAACCGAGAAATGGCAAAATACTGGAGCGGCATTAAAATAAATAGTCTCTCCTCAAACcgatcatgaaaaaaaaaactgcagaGTTCTCCATCGACTTATCAACCTACACACCTAGCGGAGAATGGCATTTGACAAAAGCTCCCGCTGTAAAAGATGTGAAATTCAACTCATGCTGTAAAGAACCATACTCTACGGTAACATTCTATATGTTTCTCAGGTA--
i cb4.chrX             I 155 I 38
s caeRem4.Crem_Contig0 1053641 188 -  4500979 ------------agacgg---------------tTTGTGGAACACATGGTGTACT----------------GTACATGTCAAGT----------------------Gttgttt--------------------------------------------------------------------------------cagagttttcaattGATCTATCCACATATACACCAAGTGGGGAGTGGCATCTTACCAAGGCTCCTGCTGTGAAAGATGTAAAATTCAATTCGTGTTGCAAAGAACCTTACTCAACTGTCACATTCTACATGTTTCTGAGG----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6023948 193 + 20921866 ------------agatggtgggc----------ttttcaattttctttgtgCATT----------------TTCATGAtactat--------------------------ttt--------------------------------------------------------------------------------tagaattctcTATTGATTTATCTACATACACTCCAAGTGGTGAATGGCATCTCACAAAAGCCCCGGCCGTGAAAGATGTCAAGTTCAACTCGTGCTGCAAAGAACCTTACTCTACAGTAACGTTTTATATGTTTTTGAGGTAAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2329976 192 +  4147112 ------------agatggtTTG-----------TGTTAAAACGTCTAGGTacatg----------------atc-tgaaaaaat-------------------------gttt--------------------------------------------------------------------------------tagagTTTTCAATTGACCTATCGACATATACTCCTAGCGGTGAATGGCATTTAACAAAAGCTCCCGCGGTTAAAGATGTAAAGTATAATTCATGTTGCAAGGAACCATACTCAACAGTCACATTCTACATGTTTTTGAGGTAAA
i caePb3.Scfld02_0     C 0 C 0

a score=-5844.000000
s ce10.chrX            4023922 34 + 17718866 TTCACC----TATTT----GAACCA-----CGAACCGCAAAAAAAAC---
s caeRem4.Crem_Contig0 1053829 29 -  4500979 --------------T----GaaccatcaaaaatatttcataatCGGC---
i caeRem4.Crem_Contig0 C 0 I 10
s caeSp111.Scaffold630 6024141 29 + 20921866 GAGAAC----TTTGT----GCACCA-------------ATATACGGCCAA
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2330168 37 +  4147112 TATAAcatgttttgttgaaaaacca-------------aTATATAGCGGA
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9156482 38 + 21540570 I

a score=80946.000000
s ce10.chrX            4023956 131 + 17718866 ATTTTCAGACGTCGTACTCTCTTTTATTTATTCAATATCATTCTCCCGTCTCTATTGATCTCAATTATGACACTTATGGGGTTCTGCCTCCCGGCACACGACATGTCGGAAAAAATTGGTTATCGTAAG----------TT
s cb4.chrX             9156520 141 + 21540570 GTTTTCAGAAGACGAACTTTATTTTATCTATTCAATATCATCCTTCCATCACTTTTAATTTCAATAATGACACTGATGGGATTCTGTCTTCCAGCACATGACATGTCCGAGAAAATTGGTTATCGTAAGAatctagttttt
i cb4.chrX             I 38 C 0
s caeRem4.Crem_Contig0 1053868 131 -  4500979 GATTTCAGACGACGAACTCTGTTCTATTTATTCAATATTATTCTTCCGTCTCTTCTGATCTCAATAATGACACTGATGGGATTCTGTCTGCCAGCTCACgacatgtctgaaaaaattggatatcGTAAG----------Tt
i caeRem4.Crem_Contig0 I 10 C 0
s caeSp111.Scaffold630 6024170 131 + 20921866 ATTTTTAGACGGagaactcttttttatttattcaatatTATTCTTCCCTCCCTTCTGATCTCAATAATGACTTTGATGGGATTTTGTCTACCAGCTCATGACATGTCCGAGAAAATAGGATACCgtaag----------tt
i caeSp111.Scaffold630 C 0 I 28
s caePb3.Scfld02_0     2330205 127 +  4147112 ---TTTAGACGCAGAACGTTGTTCTATTTGTTCAACATCATCCTTCCATCACTTCTAATTTCAATAATGACATTGATGGGGTTCTGCCTTCCAGCTCATGATATGTCAGAGAAAATAGGATATCGTGAG----------T-
i caePb3.Scfld02_0     C 0 C 0

a score=-400.000000
s ce10.chrX            4024087 9 + 17718866 ACATAATGA
s cb4.chrX             9156661 8 + 21540570 -aaaaattg
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1053999 8 -  4500979 -aaaaataa
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2330332 3 +  4147112 ------TGA
i caePb3.Scfld02_0     C 0 I 168
e caeSp111.Scaffold630 6024301 28 + 20921866 I

a score=-2660.000000
s ce10.chrX            4024096 23 + 17718866 TGTATGTTCAGTAAAAAATATAT
s cb4.chrX             9156669 15 + 21540570 --agcagttctgtga------tt
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1054007 21 -  4500979 --tggaatttGGAAAACGTCTCG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2330503 23 +  4147112 tgaatatttattgaaacttgTTT
i caePb3.Scfld02_0     I 168 I 3
e caeSp111.Scaffold630 6024301 28 + 20921866 I

a score=58316.000000
s ce10.chrX            4024119 95 + 17718866 TTCCAGAGACTACAATTCTACTATCTATATGTTTTTTTGTTACAATTGTCAGCGAAATGACTCCTCCCACATCTGAATCTGTTCCTTTACTTGGT
s cb4.chrX             9156684 95 + 21540570 ttttagaaaccaCTATTCTACTTTCCATCTGTTTTTTCGTCACAATTGTGAGTGAGATGACACCGCCTACTTCTGAATCTGTGCCTTTGCTAGGT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1054028 95 -  4500979 TTTTAGAAACCACAATTTTGCTATCAATTTGTTTCTTTGTGACCATTGTAAGTGAAATGACACCGCCCACTTCTGAATCAGTACCTCTATTAGGT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6024329 95 + 20921866 ttaCAGAGACTACGATTCTGCTGTCAATCTGTTTTTTCGTGACTATCGTTAGTGAAATGACACCACCAACTTCGGAATCTGTTCCACTACtaggt
i caeSp111.Scaffold630 I 28 I 32
s caePb3.Scfld02_0     2330529 95 +  4147112 TTTCAGAAACCACTATTCTACTGTCCATATGCTTTTTTGTCACAATTGTGAGTGAAATGACGCCACCCACGTCTGAATCTGTTCCGTTGTTAGgt
i caePb3.Scfld02_0     I 3 C 0

a score=546.000000
s ce10.chrX            4024214 1 + 17718866 A
s cb4.chrX             9156779 1 + 21540570 A
i cb4.chrX             C 0 I 35
s caeRem4.Crem_Contig0 1054123 1 -  4500979 A
i caeRem4.Crem_Contig0 C 0 I 40
s caePb3.Scfld02_0     2330624 1 +  4147112 a
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6024424 32 + 20921866 I

a score=-7.000000
s ce10.chrX            4024215 20 + 17718866 GGTACATTTTGTAGGTTTTC
s caePb3.Scfld02_0     2330625 10 +  4147112 ga----------aagttttc
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9156780 35 + 21540570 I
e caeSp111.Scaffold630 6024424 32 + 20921866 I
e caeRem4.Crem_Contig0 1054124 40 -  4500979 I

a score=0.000000
s ce10.chrX            4024235 320 + 17718866 ATATTTTTTTCACTACATGTATTATGAAATACAGTGCGGGGTAATATTCTACAGGCATTTTATTTCGCAGTAATTATGCAGTAAAAAACACGAGTTTCTTCAACACATATAATTCAAAATCTATCAATTGAGGATGCAAAATTATGCCAATTTTTTGAAATACAGTTCCATTTGTGTCAAAATTGTTTCGATTTTATTCTAAAAAAAGTTTCAGCACCTGACATTTGACGGTTCCGTTTAAGACTAGAATTTTCCTAACGATCCGTAACTTGGAAACAAGGTTTCATGAAACAAATTTTAATAACAATATGGTCGCCATG
e caePb3.Scfld02_0     2330635   0 +  4147112 C
e cb4.chrX             9156780  35 + 21540570 I
e caeSp111.Scaffold630 6024424  32 + 20921866 I
e caeRem4.Crem_Contig0 1054124  40 -  4500979 I

a score=-1739.000000
s ce10.chrX            4024555 101 + 17718866 AAATTTCTTTTAATTATTATATATTGATAATGATCTATATTGTCAAATACTAATAGAGAAAAAATTGTATCTCACAATATCAAAGCATAACTTTCAAATTT
s caePb3.Scfld02_0     2330635  29 +  4147112 aaatttctcaaaatcttcat---------------------------------tag---------------------------------------AATTTA
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9156780  35 + 21540570 I
e caeSp111.Scaffold630 6024424  32 + 20921866 I
e caeRem4.Crem_Contig0 1054124  40 -  4500979 I

a score=273.000000
s ce10.chrX            4024656 1 + 17718866 T
s caeSp111.Scaffold630 6024456 1 + 20921866 t
i caeSp111.Scaffold630 I 32 C 0
s caePb3.Scfld02_0     2330664 1 +  4147112 T
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9156780 35 + 21540570 I
e caeRem4.Crem_Contig0 1054124 40 -  4500979 I

a score=490363.000000
s ce10.chrX            4024657 904 + 17718866  
s cb4.chrX             9156815 906 + 21540570  
i cb4.chrX             I 35 I 494
s caeRem4.Crem_Contig0 1054164 914 -  4500979  
i caeRem4.Crem_Contig0 I 40 C 0
s caeSp111.Scaffold630 6024457 899 + 20921866  
i caeSp111.Scaffold630 C 0 I 69
s caePb3.Scfld02_0     2330665 906 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=-958.000000
s ce10.chrX            4025561 8 + 17718866 CAGTTGTG-
s caeRem4.Crem_Contig0 1055078 8 -  4500979 AATTTGCG-
i caeRem4.Crem_Contig0 C 0 I 70
s caePb3.Scfld02_0     2331571 7 +  4147112 --TCTGGCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9157721 494 + 21540570 I
e caeSp111.Scaffold630 6025356 69 + 20921866 I

a score=661.000000
s ce10.chrX            4025569 100 + 17718866 TTTTGTTATGTAGGTTATT-CAGTGAAAATTTGACATT-ATAAAGCATTTTCATATATGGTCGTGTGCTCCTAATTCATGTTACCATTTTAAAATGGGGTAT
s caePb3.Scfld02_0     2331578  79 +  4147112 TTTTGTTA-----ATTATTACCACCAAACTTTCATATTCATAAAATATCTCCTTG---------------ACAATTT---TTAtcatattgaaaagaaatat
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9157721 494 + 21540570 I
e caeSp111.Scaffold630 6025356  69 + 20921866 I
e caeRem4.Crem_Contig0 1055086  70 -  4500979 I

a score=0.000000
s ce10.chrX            4025669 31131 + 17718866  
e caePb3.Scfld02_0     2331657     0 +  4147112 C
e cb4.chrX             9157721   494 + 21540570 I
e caeSp111.Scaffold630 6025356    69 + 20921866 I
e caeRem4.Crem_Contig0 1055086    70 -  4500979 I

a score=164.000000
s ce10.chrX            4056800 10 + 17718866 AACTGTTTAA
s cb4.chrX             9158215 10 + 21540570 AAACGTTTTT
i cb4.chrX             I 494 C 0
e caePb3.Scfld02_0     2331657  0 +  4147112 C
e caeSp111.Scaffold630 6025356 69 + 20921866 I
e caeRem4.Crem_Contig0 1055086 70 -  4500979 I

a score=6620.000000
s ce10.chrX            4056810 33 + 17718866 AATCAGCACCGAATTTTATT---AAAC-------AAAAAGAAG
s cb4.chrX             9158225 42 + 21540570 AATCAGCGCCaaatttattt-taatactttttctttgaaaaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1055156 36 -  4500979 aatcAGCACcaaatttatttataaaaa-------aaaagaaaa
i caeRem4.Crem_Contig0 I 70 C 0
s caeSp111.Scaffold630 6025425 35 + 20921866 AATCAGCaccaatttttatt-tgaaaa-------gggaaaaaa
i caeSp111.Scaffold630 I 69 C 0
e caePb3.Scfld02_0     2331657  0 +  4147112 C

a score=150743.000000
s ce10.chrX            4056843 803 + 17718866  
s cb4.chrX             9158267 826 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1055192 792 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6025460 774 + 20921866  
i caeSp111.Scaffold630 C 0 I 51
s caePb3.Scfld02_0     2331657 792 +  4147112  
i caePb3.Scfld02_0     C 0 I 1

a score=-7966.000000
s ce10.chrX            4057646 37 + 17718866 AATGAG----------------ATTTTATTAAAAAGT-----AATTA-CTTTCTCGTTT
s cb4.chrX             9159093 58 + 21540570 AACGGGTCATACAGACTTAAAATTTCTtcttaaaaatggaaaaattacatttaagact-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1055984 39 -  4500979 CACTCGT---------------TTGATTTTGATCAATAG---TAtta-atttctgatt-
i caeRem4.Crem_Contig0 C 0 I 25
s caePb3.Scfld02_0     2332450 16 +  4147112 -----------------------------tgaaacATTA---GATTA-G----------
i caePb3.Scfld02_0     I 1 C 0
e caeSp111.Scaffold630 6026234 51 + 20921866 I

a score=-1788.000000
s ce10.chrX            4057683 62 + 17718866 TTCCATTTTTTTCCACCCAATTATCTGTTTTTTTTAACCGTGAGC-----------------------AAAAAAAAACATTTTGA
s cb4.chrX             9159151 80 + 21540570 tttcgatttt-----ccaaaaagccCCCTATCGTCAACTTTAATccattttgtcaactgagagagcgagaaaaaaaactttttga
i cb4.chrX             C 0 I 86
s caePb3.Scfld02_0     2332466 28 +  4147112 -TGTGttttt--------------------ttATCAAGTATAAAC------------------------------------TTGA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6026234 51 + 20921866 I
e caeRem4.Crem_Contig0 1056023 25 -  4500979 I

a score=-1115.000000
s ce10.chrX            4057745 59 + 17718866 GCCAGCGTCAATAACGTTAAACCTACTTTATATGATAAGGACTGACAAACATTCACGTT
s caePb3.Scfld02_0     2332494 27 +  4147112 G------------------AAtatgctttttgaaa---------acagaaattc-----
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9159231 86 + 21540570 I
e caeSp111.Scaffold630 6026234 51 + 20921866 I
e caeRem4.Crem_Contig0 1056023 25 -  4500979 I

a score=-20759.000000
s ce10.chrX            4057804 308 + 17718866 TTTTTTTGAATAATTTGATCTTTCGTTATATTTTGTGATTTTTATGCAAAAAAATCGTTTTTTTTTCTCGTTGA-----------ATTAATTTTCT--------------------------GCAAAAAAACTT-----------------------------TTGGAAACATTTATATACATATTATGAAAAAATA---------CATGTGAAT------GAAAAACTATGAGAATATGGCATTTTatttccagttagtggcaattccggctaaa----------gggttttggcatt---acatttttggcgatagataa-ttttggcaa----------ttgtcaaaattgtcaaattgttaaatttgccagaattgccgaaattggcaaaattgccATTCATGTATTTT-
s cb4.chrX             9159317 373 + 21540570 ttcttttga---------------ttcaaaatttctgaacttta--cAGAAGACCTGATATcattgaaacttcaaaatagaTGCTATTCATTTTTGCTTTGCTTTCAACTGCTAAAAATGGCACAGTACAAATTCGTTGAATTGAACATGTTTcttgttttatttgaaaatacgGATAACTAGATGATAGGAATTTCAAACTCACTCATGTTTTTCCTTCTATCAGA-----AGCATCCAGC-TATAGTTTCTAAC-----ACAATGCCGTCAGAATAAAAATTGCGGATTTTGG-ATTGAGGCACTTTTGG-GATAGATAAGTTTTGGTAA--TCAACCAACTCtcggattttttaaacaactGATT----CAAGATTGCCAATTTCAGACCAAC-----TTTAGacagtttt
i cb4.chrX             I 86 C 0
s caePb3.Scfld02_0     2332521 153 +  4147112 ----------------------------------------------caaaaaatctagttttatCG-------------------ATGAatttctg-------------------------------------------------------------------ttgaaaa------------------------------------cttgattttttttcgacaaaatt---aGAAACCAG------GTTTTCA-------------CTATCagac-----------gttttt----tt----caattttg---------aagattcagTGAACTCATTCTAATCTCTgacttttctgaaagtgaa-------aaaat------------------------------------
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6026234  51 + 20921866 I
e caeRem4.Crem_Contig0 1056023  25 -  4500979 I

a score=-3938.000000
s ce10.chrX            4058112 22 + 17718866 --TTTTTCATAAATTCCAAATTGA-----
s cb4.chrX             9159690 22 + 21540570 ggtttttc--aaattcaaaactaa-----
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6026285 22 + 20921866 --tttttc-----ttcaagttttattcaa
i caeSp111.Scaffold630 I 51 C 0
s caePb3.Scfld02_0     2332674  1 +  4147112 ----------------------------a
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1056023 25 -  4500979 I

a score=317665.000000
s ce10.chrX            4058134 706 + 17718866  
s cb4.chrX             9159712 764 + 21540570  
i cb4.chrX             C 0 I 1
s caeRem4.Crem_Contig0 1056048 717 -  4500979  
i caeRem4.Crem_Contig0 I 25 I 65
s caeSp111.Scaffold630 6026307 701 + 20921866  
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2332675 694 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=563.000000
s ce10.chrX            4058840 5 + 17718866 GTTGA
s cb4.chrX             9160477 5 + 21540570 gatga
i cb4.chrX             I 1 C 0
s caeSp111.Scaffold630 6027008 5 + 20921866 GTTTA
i caeSp111.Scaffold630 C 0 I 85
e caePb3.Scfld02_0     2333369 0 +  4147112 C
e caeRem4.Crem_Contig0 1056765 65 -  4500979 I

a score=-3813.000000
s ce10.chrX            4058845 40 + 17718866 -----ATTTT------------TTAGTGATCAGGG------------------TTTGTA------------CTGTGAAT-AGTGAGAA
s cb4.chrX             9160482 88 + 21540570 aaaatatataaactCAAATATCataataatgaaaattcagaatcgaaCGTTCCTTAGAAACTCAAGATTCTCAATTGAttagtggggg
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2333369 45 +  4147112 ---GTGTTTTAA----------GTAATGATTAAA-------------------TTAGAA-----------TATGTGAATAAATGTGAA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6027013 85 + 20921866 I
e caeRem4.Crem_Contig0 1056765 65 -  4500979 I

a score=-4840.000000
s ce10.chrX            4058885 57 + 17718866 AAAAAAACAAAAATTAGGAAA----------GAAATATATGTTTTTTTTT--TTAATTTTTGGTGATCA--
s cb4.chrX             9160570 49 + 21540570 gggggggggggggttttgGAG----ATG------AAATCAGTTGTTTTGA----------TTGAAATCA--
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1056830 62 -  4500979 AGAGAAACTCCCGTTATGaat----atg---gaaaaataaattgttgtcaactcaaatttttgtgatca--
i caeRem4.Crem_Contig0 I 65 C 0
s caePb3.Scfld02_0     2333414 61 +  4147112 TAATTAACTTCCACTTTGAAGTCAAATGAATGGCAActcaaatgtttttg----------ttgggagaatc
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6027013 85 + 20921866 I

a score=15947.000000
s ce10.chrX            4058942 123 + 17718866 GAAAAAAAAATATTTAAAAGTAT--GAAAAGATGGTGAGT----GTGTTGTTTAGAGCATTAGTCAGTCACACG-TAATAAGTCACTTCACACGTGGTCGTTAGAAA---TTGTTAA-------CTCAG---------GTTTCTCTCAA-------
s cb4.chrX             9160619 113 + 21540570 -GGTTGaa------cgaaaaga---gaaaaaactgtGAGTGGAAGTGTT-----AGACG------AGTCACACGCTGATCAGTCACTTCAAACGTGGTCGTTAGAAA-----------------ATCAATTACTTAAGGTTACGA-TATTAT----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1056892 143 -  4500979 -aattaaaaattattgaatcaGTTTGAAATAAACGTGAGT-GAGGTGTT-----GGGCATTAATCAGTCACACG-TAATAGGTCACTTCACACGTGTTCGTTAGAAAAC-TTGTTAACTGAGGGATTAAGTTTTTAAGATTTCGACTATTAT----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6027098 116 + 20921866 gaaatgaaattgat-----------gaagTGAGAGTG-TT----GTGTT-----GAGCATTAGTCAGTCACACG-TTATAATTCACTTCACACGTGATTGTTAAAAGAAACTGTTAA-------CTCAG---------GTTATCGTTGT--TTCAA
i caeSp111.Scaffold630 I 85 I 32
s caePb3.Scfld02_0     2333475 134 +  4147112 aaaatcaaattaattaaaaaaa---gaagtgagtgTATTT----GTGTT-----GAGCATTAGTCAGTCACACG-GTATGAGTCACTTCACACGTGAT--TTGGTAAGTATTGGTAA-------CTTAGTTGGATACTGTTATGATTATCATTCAT
i caePb3.Scfld02_0     C 0 I 3

a score=-3349.000000
s ce10.chrX            4059065 30 + 17718866 GTAGAACGGAAG--------------AATGGTTAGTA---CCAAAAT
s cb4.chrX             9160732 42 + 21540570 -----TCAGAGGGGTCCTTCTCACAATCTGGTTAGAAGTTTCACTAT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057035 36 -  4500979 -----CAATAAA---TTATCTCACAAAAT-GTTAGAAA--CAACTAT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2333612 19 +  4147112 --------------------------ACTGGTTAGGGA--CCACTAT
i caePb3.Scfld02_0     I 3 C 0
e caeSp111.Scaffold630 6027214 32 + 20921866 I

a score=71209.000000
s ce10.chrX            4059095 118 + 17718866 CATACCTGTGATGATTTCTACCCATATAACTGCTATTTGCATCACTTCGCACCGTCGTCAGCATTT---CATCATTTGTTGTTTGTGTATTATTGAATTCTCGTTGACTTTCAAGCTGAAA
s cb4.chrX             9160774 118 + 21540570 CGTACCTGTGATGGTTGCGGCCCATGTAGCTACTGTTCACATCGGATCGGACGTTTGTTAGCATGT---CCTCGTTGGTTGTCTGTGTGTTGTTGAACTCGCGTTGGTTCTCAAGCTGAAa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057071 118 -  4500979 TGCACCTGTGATGGTTTCTGCCCATGTAGCTGCTGTTCACATCACTTCGCACCGTTGTTTGTAGAT---CATCGTTGGTTGTCTGCGTGTTGTTGAACTCACGTTGAGATTCCAACTGAAA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6027246 121 + 20921866 CGTACCTGTGATGATTTCTTCCCATATAGCTGCTGTTCACATCACTTCGCACCGTCGTCAGCATGTCGGCATCGTTGGTAGTCTGTGTATTGTTGAATTCACGTTGGTTCTCCAACTGAAA
i caeSp111.Scaffold630 I 32 I 15
s caePb3.Scfld02_0     2333631 121 +  4147112 CGTACCTGTGGTGGTTTCTTCCCATGTAGCTGCTGTTCACATCACTTCGCACATTCGTTAGCATATCGGCATCACTGGTATTTTGTCTGTTGTTGAACTCGTTCTGGTTCTCCAACTGAAA
i caePb3.Scfld02_0     C 0 I 8

a score=-1720.000000
s ce10.chrX            4059213 9 + 17718866 TTAATGAAT----
s cb4.chrX             9160892 5 + 21540570 ----taatt----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057189 9 -  4500979 ----CGATCAATT
i caeRem4.Crem_Contig0 C 0 I 33
s caePb3.Scfld02_0     2333760 9 +  4147112 taagtgaaa----
i caePb3.Scfld02_0     I 8 C 0
e caeSp111.Scaffold630 6027367 15 + 20921866 I

a score=1080.000000
s ce10.chrX            4059222 11 + 17718866 AGCAAAAAATT
s cb4.chrX             9160897  9 + 21540570 --cataaaatt
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2333769 11 +  4147112 aaaaaggaatt
i caePb3.Scfld02_0     C 0 I 326
e caeSp111.Scaffold630 6027367 15 + 20921866 I
e caeRem4.Crem_Contig0 1057198 33 -  4500979 I

a score=-1082.000000
s ce10.chrX            4059233 113 + 17718866 TAAATCGCCAGTTTTGGCGTAAACTAATTGttttttttaattaaaaaagaaattagaaataattaaaaaaCTAGACCGCCTCGAAAATTATTTTCAATATT-GTTGGAATCTTT
s cb4.chrX             9160906  62 + 21540570 tta---------------------taatcattct-------------------------------gaaaatttgagaacatTGTGTAGTATCATAAGTGTTGGTTGGAAGTTTC
i cb4.chrX             C 0 I 14
e caePb3.Scfld02_0     2333780 326 +  4147112 I
e caeSp111.Scaffold630 6027367  15 + 20921866 I
e caeRem4.Crem_Contig0 1057198  33 -  4500979 I

a score=0.000000
s ce10.chrX            4059346 19 + 17718866 TGAAAAAAAACCCTCAATA
e caePb3.Scfld02_0     2333780 326 +  4147112 I
e cb4.chrX             9160968 14 + 21540570 I
e caeSp111.Scaffold630 6027367 15 + 20921866 I
e caeRem4.Crem_Contig0 1057198 33 -  4500979 I

a score=-5724.000000
s ce10.chrX            4059365 603 + 17718866  
s cb4.chrX             9160982 358 + 21540570  
i cb4.chrX             I 14 C 0
e caePb3.Scfld02_0     2333780 326 +  4147112 I
e caeSp111.Scaffold630 6027367  15 + 20921866 I
e caeRem4.Crem_Contig0 1057198  33 -  4500979 I

a score=-667.000000
s ce10.chrX            4059968 50 + 17718866 -TTTTTCCATCAATAATATTTTGGATAATTTTTAATTAACGTTTTTCAAAT
s cb4.chrX             9161340 20 + 21540570 -tttttc-------------------------cg--TAGCACATTTCA---
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6027382 49 + 20921866 ttttttcatttacgATTGTATTTGCTAGATTTTG--tggtatttttcaaac
i caeSp111.Scaffold630 I 15 I 2
e caePb3.Scfld02_0     2333780 326 +  4147112 I
e caeRem4.Crem_Contig0 1057198 33 -  4500979 I

a score=-6416.000000
s ce10.chrX            4060018 17 + 17718866 AATCTTTTAACGAATTT---------------
s cb4.chrX             9161360  5 + 21540570 ------------TGTTC---------------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6027433 21 + 20921866 -----------tGGATTGATTGACCAAAATAA
i caeSp111.Scaffold630 I 2 C 0
s caePb3.Scfld02_0     2334106 17 +  4147112 -----------AAGTTTG--CGAC--AAATAA
i caePb3.Scfld02_0     I 326 C 0
e caeRem4.Crem_Contig0 1057198 33 -  4500979 I

a score=129496.000000
s ce10.chrX            4060035 555 + 17718866  
s cb4.chrX             9161365 442 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057231 495 -  4500979  
i caeRem4.Crem_Contig0 I 33 C 0
s caeSp111.Scaffold630 6027454 457 + 20921866  
i caeSp111.Scaffold630 C 0 I 13
s caePb3.Scfld02_0     2334123 460 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=-12142.000000
s ce10.chrX            4060590 126 + 17718866 TTCTCAGAACCTTTTTCAATATTCAAAAAAATAGTGAAATTGGCACAAAGGCACATAGGCACAAAAAACGCATAGGCACAAAAAACTGGGCTTGCATTGCAGGCGTAAGGCCCTGTAATATTGAAA
s cb4.chrX             9161807  19 + 21540570 -----aggcTAGCTTTCTGGGTAA------------------------------------------------------------------------------------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057726  35 -  4500979 -tttcagaccatttttttcaatta----------------------caaGGAA----------------------------AAAAC----------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6027924  33 + 20921866 ttctgcGACTAACTTTTAAAAGTA--------------------ATTACGGTA-------------------------------------------------------------------------
i caeSp111.Scaffold630 I 13 C 0
e caePb3.Scfld02_0     2334583   0 +  4147112 C

a score=-4988.000000
s ce10.chrX            4060716 48 + 17718866 ATTAGAATGTGAATAGTTATCGATTGATCTAGAAACAAACCCGGCTAA
s caeRem4.Crem_Contig0 1057761  5 -  4500979 GCTAA-------------------------------------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6027957 16 + 20921866 AGTAATACGATATTAG--------------------------------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2334583 14 +  4147112 ATTAGAACTAGATT----------------------------------
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9161826  0 + 21540570 C

a score=-1100.000000
s ce10.chrX            4060764 22 + 17718866 AACAGGGAGAACTGAAATTTGA
s cb4.chrX             9161826  9 + 21540570 -------------TGCGCGTGC
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6027973 12 + 20921866 ----------ACTGGAATTTGA
i caeSp111.Scaffold630 C 0 I 1
s caePb3.Scfld02_0     2334597 10 +  4147112 ------------TGAAacttgt
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1057766  0 -  4500979 C

a score=-5297.000000
s ce10.chrX            4060786 115 + 17718866 CAGTTTTAAACTTGTACAAGCTTTACCTGGTCGGTAGTCTCCAAAGACGAAATATTTTAAAAATGGCACCACAGCGCCCTAATGTTTCTAGTTTTCTAAACAAATTTTAAAATAG
s cb4.chrX             9161835  53 + 21540570 ----------CCTTTTTaagatttgt--------------------------tatttttcaaataa-------------tgatcctttt-----------caaatttttaaag--
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2334607  33 +  4147112 -------caactttttt----tccct--------------------------tatttt---------------------------ttct-----------caaaattt-------
i caePb3.Scfld02_0     C 0 I 2
e caeSp111.Scaffold630 6027985   1 + 20921866 I
e caeRem4.Crem_Contig0 1057766   0 -  4500979 C

a score=-4315.000000
s ce10.chrX            4060901 9 + 17718866 TTTAAAATC-------
s cb4.chrX             9161888 4 + 21540570 -tt----tc-------
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6027986 5 + 20921866 -------TTG----AC
i caeSp111.Scaffold630 I 1 C 0
s caePb3.Scfld02_0     2334642 9 +  4147112 -------tcgaaaaat
i caePb3.Scfld02_0     I 2 C 0
e caeRem4.Crem_Contig0 1057766 0 -  4500979 C

a score=241855.000000
s ce10.chrX            4060910 761 + 17718866  
s cb4.chrX             9161892 688 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1057766 756 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6027991 727 + 20921866  
i caeSp111.Scaffold630 C 0 I 39
s caePb3.Scfld02_0     2334651 749 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=-3629.000000
s ce10.chrX            4061671 54 + 17718866 TCAAATTCTGACAGGTTTCA---TTTTGGACTTGGGGACAAAATATTCGAGAAGCTA
s cb4.chrX             9162580 42 + 21540570 ------TCTGTGAAGCTTCAGGTTTTC-----TAGGGGCTATATGTTTTagaa----
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1058522 46 -  4500979 ------GAAGAAAGGAACCAGGTTTTTAGA--AAGAGGGCTTGTGCTCcagaaa---
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2335400 47 +  4147112 ---GCGGGTGAAAGGAACCAGGTTTCCGCA--TTTAGGCTCTGCTCttgaaa-----
i caePb3.Scfld02_0     C 0 I 2
e caeSp111.Scaffold630 6028718 39 + 20921866 I

a score=294772.000000
s ce10.chrX            4061725 817 + 17718866  
s cb4.chrX             9162622 915 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1058568 873 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6028757 858 + 20921866  
i caeSp111.Scaffold630 I 39 I 37
s caePb3.Scfld02_0     2335449 816 +  4147112  
i caePb3.Scfld02_0     I 2 C 0

a score=-3377.000000
s ce10.chrX            4062542 13 + 17718866 -----------GATCCGCGTTGAA
s cb4.chrX             9163537  5 + 21540570 a--------gaga-----------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1059441 13 -  4500979 aaaatatagggaa-----------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2336265  4 +  4147112 ---------gaaa-----------
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6029615 37 + 20921866 I

a score=76149.000000
s ce10.chrX            4062555 314 + 17718866 --------------AA------AGAAA-TGGAGAACACA---ATGCGGATTCTAGTAACATTGTG---GTATAATATTC----------AGAATT-CTGAAGACTTTAT-----GTTG-------------------------------GAACAGA-----------------------CTGAGTTC--TGACGGG-----------------AAAAAACATT----------------CCAAAAAGA-TTTTGAAACACAACAGGAATATTG------------CATAACTT------G---GAAAAAGAACAAGGCGGTTCCTGTTTGAAGTACTCTTTTTT-----TCCGAGGGTCACACGATTTTAAAGCGCCTAAGAGCGGAGAATATTTGAAATATGATTG-GAAAGGACA---------GG-GATTAGGCAACA-ACGAAAGAGG-----------------GAGCTTCAGAC--GTTTTTCATGAATTATTACTTA
s cb4.chrX             9163542 462 + 21540570 gaggaaaatgtggcaaaaatcccagaatgaaaaaaaacagaagcaCGGATTC-GTTCTCGTGGTAAACGTAAAATATTCTCAAAACACAAgac---tctcactctctctcggACGCTATTCTTCATTACAGATTTGTTTGGCTTA----GGAGAGTAAGAAAAGCATGTGTGTTCGTTTTTGAGTTCC-TCCAGACGAAGAATCaggaataacaaaaaagattGTCG------Tcgc--cagaaaaaa---ttgaaacac----------tcTGCAGAAATGCGCCAGAACTTTTTAG-GCTCAACCGAGA-----GCGGTTCCTATTTGAAGTACTTTTTCTTGGCCCGCTGAGGAC----CGACTTCAAAACGCCTAAGAGCCGcgaatatttgaaatattatTG-GAAAGGACAGAGTCGCGGGA-GAttaggaaacaaaaaagaaaggagagaggaaaaaaatggaagcgtcagacttttttttcataaattattCTCTA
i cb4.chrX             C 0 I 122
s caeRem4.Crem_Contig0 1059454 401 -  4500979 aaggaaaataaggtaa------tagaa-aaCAGCAGACAACTACACGGATTCTGTTCTCATTGTA---GTTGAATATTCTCAAAGCACGAGTCTTGTTTGAGTCTCTTT-----GCTATACTTCATTAAAGATTTGTTTGGCTTAT---GAAGAGAACGAGAAGCGT-Cgtgttctgttttttgttc------gaC-------------------AAAAGAATGTCG------------CAGAAGAGA-TTTTGAATCAC----------TTG------------CTGAACTTTTTTG-GTAAGGGCAAGAACAAGGCGGTTCCTGTTTGAAGtacttttcttttctgttgtGAGGAC----CGACTTCAAAACGCCTAAGAGCCGCgaatatttgaaatatgaTTGAAAAAGGGCAGAGTT----GG-GATTAg-------acaaaaaagtagagaagagaaa-----aagcttcagac--ttttttcataaattattACCAC
i caeRem4.Crem_Contig0 C 0 I 9
s caeSp111.Scaffold630 6029652 378 + 20921866 -----AAGTaatggaa------gaaaa-cagagaGGGTA-----------TCTGTTCACATCGAA---GTAAAATATTCTCAACGCACAAGACTT-ATTGAGTCGTCGT-----GTCATACTTCATTACAGATTTGTTTGGcttatgaagaaaagaacgggagaaaaag----------ttgtgtTCT-TCTCGGG-----------------AAAAAAGATTGTCGCTGTtgtcacagaaaaaaagatttttgaaacac----------ttg------------cagaactttttttcgtcagGAGAAGAACAAGGCGGTTCCTGTTTGAagtacttttttt-------ctgaggaC----CGACTTCAAAAAGCCTAAGAGCTGcgaatatttgaaatatgattgaaaaaggaCAGAGTC----GGAGATTAG-------ACAAAAGA---------AAGCC-----TGGCTTGAGAC---TTTGGTATAAATTATT-----
i caeSp111.Scaffold630 I 37 C 0
s caePb3.Scfld02_0     2336269 365 +  4147112 -----gaataatcgga------gaaaa--aaagaagtta-------------tgtTCTCGTCGCG---GTAAAATATTCTCAAAGCACGAGTTTT-GTTGAGTCGCCGC-----GCTATACTTCATTACAGATTTGTTTGGCTTAT---GAGAGGAacgggaagaaaagaaaggtttTCTTATGTTctgtccagaa-----------------aaaaaagattgtcgTGCTTGTCgt--caaaaaaggattttgaaaCAC----------TCG------------CAGAACTTTTTTG-GTCAAAGTAAGAACAAGGCGGTTCCTATTTGAAGTACTTTTCTTT-----GCTGAGGAC----CGACTTCAAAAAGCCTGAGAGCGGCGAATATTTGAAATATGATTGAAAAAGGACACAGTC----GG-GATTAC-------ACAAAAGA---------------------------------CTAGGGAAGAGTTATT-----
i caePb3.Scfld02_0     C 0 C 0

a score=105266.000000
s ce10.chrX            4062869 296 + 17718866 -AACTTCTTAAAATAGGTCCGTACTGCTTTC--------AAGCATACA-----------------------------------------CACACG-------TTTTCAATCCGAACAAG-TGGATATTGAATGTTGGCACTAGAGGCGGTCTCAGAAACGGCAAGAATAATTGATGCAATGCAAACGAATCAGATTGCCTC---TTCGACTACTTTTGCACTTTGTG-----CCGTCTTGAGCCGCCCCGACTGCTGCTGCTGCTGAGTCCACA------ATCTAAACTAGTTGGAACTC--------CACCTT---GGACCAT--AAAATTCGCCATTTTTTTCTTTTCAAATCTCAATTATGCATTATT---TCT-TCTTTTT---------
s cb4.chrX             9164126 352 + 21540570 gactttctaaaatttcaacaatttcggGTTGAGAAACGgactaattcaaaaaatcaggtgTATTCATTCTAAATTAAGAATCCTAAGGCTAAAAGAAGACGTTTTCCAATCCGAACAAGAAGGATATTGAATGTTGGCGCTAGAGGCGGTCTCAGAAACGCCAAGAATAATTGATGCAATGCAAACGAATCAGATTGCTGCTTCTTCGACTACTTTTGCACTTTGTGCCCGTCCGTCTCAAGCT-----------ACTGGCTG--G------CATTCTATTTCTCAACTAGTTAGAACCAGCAGCCGCCACCTCATAGGACCATAAAAAA--------------CGTTTCGAATCACAATTATCCG--------TCT-cctatttttttgcttt
i cb4.chrX             I 122 I 86
s caeRem4.Crem_Contig0 1059864 263 -  4500979 AACCCCCTTAAA---------------------------ACGAATGCA-----------------------------------------TAGGAG-------TTTTCAATCCGAACAAG-TGGATATTGAATGTTGGCGCTAGAGGCGGTCTCAGAAACGGCAAGAATAATTGATGCAATGCAAACGAATCAGATTGCTTCT--TTCGACTACTTTTGCACTTTGTG-CCGTCCGTCTTGAGC-------------CGAGCTGCAG------CA------TTCTCAACTAGTTAGAGACG--------CACCTT---GGACCAT-AAAAC--------------TTTTGCGAATCACAattattttggtttttcccc-cgcatttcctctcttt
i caeRem4.Crem_Contig0 I 9 I 3
s caeSp111.Scaffold630 6030030 267 + 20921866 --ACCACTTCAACTAAAACCATAATGGA-----------ACAGAAGAAACGGGGGGAA-------------------------------GAAAGG-------TTTTAAATGTGAACAAG-TGGATATTGAATGTTGGCGCTAGAGGCGGTCTCAGAAACGCCAAGAATAATTGATGCAATGCAAACGAATCAGATTCCTTC---TTTGACTACTTTTGCACTTTGTG-CCGTCCGTCTTGAGCTG----------AGCTGCTGCTG------CA------TTCTCAACTAGTTAGAGG----------CACCTT---GGACCAT--AAAA--------------CTTTGCGAATCACGATtatt----------tcc-tctattt---------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2336634 261 +  4147112 -----CCGTGAATTGAAACGTTCTTGAA-----------ACAAACGCAAAAAGG-----------------------------------GAAGGG-------GTTTCAATCCGAACAAG-TGGATATTGAATGTTGGCGCTAGAGGCGGTCTCAGAAACGGCAAGAATAATTGATGCAATGCAAACGAATCAGATTGCTTC---TTCGACTACTTTTGCACTTTGTG-CCGTCTGTCTTGAGCCT----------TTGGGCTGCTG------CA------TTCTCAACTAGTTAGACG----------CACCTT---GGACCAT--AAAA--------------CTTTGCGAATCACAAttatt----------tccatcttttt---------
i caePb3.Scfld02_0     C 0 C 0

a score=-5913.000000
s ce10.chrX            4063165 63 + 17718866 GGCAACGCCAGTTT--ATTTTTCGAGGTTAGAAAACTAGAAAACTACAGCGTATATTGCAAAACC--------
s caeRem4.Crem_Contig0 1060130 54 -  4500979 ---------atttcctaTTCTCTTAagt--gaaagtttgaaaattagataGTTGAGTGGGAAACT--------
i caeRem4.Crem_Contig0 I 3 I 96
s caeSp111.Scaffold630 6030297 46 + 20921866 tcccggtttctttc--gtttttcta----------ttt-----ttctatcgttgaaagtgaaa----------
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2336895 58 +  4147112 tcctgctgcgtttcctattttttta----------ttt-----tcttctttttgaaagtgGAAATCTCAACCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9164478 86 + 21540570 I

a score=-157.000000
s ce10.chrX            4063228 42 + 17718866 AAATCAATAACTAGGCAAAGTTTCATATCTGAAAATAAAAAT
s caeSp111.Scaffold630 6030343 26 + 20921866 ------------aagttgaattgc----ttgaaaactcaaaa
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2336953 33 +  4147112 AAGACGTCAGCCAAATCGAATTGc---------aaccaaaac
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9164478 86 + 21540570 I
e caeRem4.Crem_Contig0 1060184 96 -  4500979 I

a score=-8659.000000
s ce10.chrX            4063270 81 + 17718866 GAAAATGAATAGGCAAAGCAGAAAACTG-----ACAGCTGTAATGAAATATCACCTGAATAATCTAA-----ATTCAAAGATTTCATGAAA------------
s cb4.chrX             9164564 64 + 21540570 -------------TAAAAT----GAATG------AAGTCGATTTACGAAATTactagaa-aatctgaaaaatctgaaaacag---gtgaaa------------
i cb4.chrX             I 86 C 0
s caeSp111.Scaffold630 6030369 84 + 20921866 --taacG-CTAAGTGAAGTCGAAAACTGCAGATATAGTTGGTTTACGAAATCGATTCTA-------------ATGCACATAT---GTATAAAGGCTTCTGAAA
i caeSp111.Scaffold630 C 0 I 25
s caePb3.Scfld02_0     2336986 66 +  4147112 --caa-----aaataaaatccaaGAGTG------GAGTTGGTTTGCGAAATCAATGCTA-------------CTGTG-ACAG---GTGCAA-----TCCAA--
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1060184 96 -  4500979 I

a score=-210.000000
s ce10.chrX            4063351 6 + 17718866 GTTATG
s caePb3.Scfld02_0     2337052 5 +  4147112 GTTG-A
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9164628 0 + 21540570 C
e caeSp111.Scaffold630 6030453 25 + 20921866 I
e caeRem4.Crem_Contig0 1060184 96 -  4500979 I

a score=370.000000
s ce10.chrX            4063357 12 + 17718866 AATTATGAATTA
s cb4.chrX             9164628  1 + 21540570 -----------a
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2337057 12 +  4147112 AATCAtaaatta
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold630 6030453 25 + 20921866 I
e caeRem4.Crem_Contig0 1060184 96 -  4500979 I

a score=-25944.000000
s ce10.chrX            4063369 211 + 17718866 GATTATTAGTTTTGTTTCTTAATATTAATTTTCATTTTTGAGTATTTGAGAGCCCTGTTCCTTCAATTCCATACTTCGATTTTCAGTTACTTTTTTACAATTGTTTTTTAATTTTGAATCATTTGA---------GACAACACAAAAAAAACCACAAA---AACA-ACAAAAACATG--CATTTAATTAATTTTTGCCGTCTCTAGCGAAATTACCAATT-AAACCA
s cb4.chrX             9164629 126 + 21540570 aaaaattagttttatttttcacc--------------tTGAATATTT--------------------------------------------CAACAAGAATTA----------ATCAACCAATCAA---------CACAACACTGAATATGTGCA------TGCATataaaaagtcaatttttcagattccc-----------------attTCACAATT-GGCAAA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1060280 124 -  4500979 AATcataaattgtatttttcaccTTC--TACTCAA-ATTAATTATTC--------------------------------------------ACAGagtaatta------------caaaaatataa---------cataacacaaaaaaatttcaaaatacgACACGTAACAAAGCA----------------------------------TTCAAATTT-AAAGCA
i caeRem4.Crem_Contig0 I 96 C 0
s caeSp111.Scaffold630 6030478 140 + 20921866 Aatcataaat--tatttttcttattacgAACTCAC--CTGATTTTCCTA-----------------------------------------ttcattttaatta------------aaatttatcAGG--------CACAATACAACATGCTCTcca-----aaca-ataaaaaatca--catttccATTCCCTTT--------------GTTCAAGGattaaaagaa
i caeSp111.Scaffold630 I 25 C 0
s caePb3.Scfld02_0     2337069 129 +  4147112 ------------tgtttttcaactt---tgcttTT--CTGAATATTCGT-----------------------------------------CCCAATGTAATTA------------AAAAATATCAGGCACTACTACACACCACACCACaatttc--------aca-acaaaaaacaa--cattccAATTCCCTTT------------CActtaaaaaatt-----aa
i caePb3.Scfld02_0     C 0 C 0

a score=85833.000000
s ce10.chrX             4063580 120 + 17718866 ACAAACCTATACTCGGGCGGTCGGTAGAAATCCATCCTATTCAACAAATACGACAGTTT-GAGAGCTGAAGAAGGCACAAT-TTATGAA----------TAAGGAC-GAGATAAATAC---AAGCAGAGACGTCAG
s cb4.chrX              9164755 126 + 21540570 ACAAACCTATACTCGGGTGGCCGGTAGAAATCCATCCTATTCAACAAGTACGACAGTTT-GAAAGCTGAAGGA---ACAAG-TTTAGAGAAGCGAAATGAAACA---AGAGAGAAtacaagaag--aagacgtcag
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1060404 119 -  4500979 ACAAACCTATACTCGGGCGGTCGGTAGAAGTCCATCCTGTTCAACAAATACGACAGTTT-TGCAGCTGAAGAAAACACAATCTTTATtg-------atgaaac----agaacaaataT---GAG--AAGACGTCAG
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold630  6030618 116 + 20921866 acaaacCTATACTCGGGTGGTCGATAGAAATCCATCCTATTCAGTAAATACGACAGTTT-GACAGCTGAAGAACgcacact-ttttgaa----------aaaag---aaaataaataa---gag--AAGACGTCAG
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      2337198 119 +  4147112 acaaaccTATACTCGGGAGGCCGGTAGAAATCCATCCTATTCAATGGATACGACAGTTT-GGCTGCTGAAGAATgcacaat-tttgaaa----------gaatgttTGAGATaaatag---aag--aagacgtcag
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17084  333731 118 +   375229 ACAAACCTATATTCCGGCGGTCGATAAAAATCCATTTTATTCAGAAAGTGCGACAGTTTGGATAGCTgaagagaaaacaat-tttttga----------ggataA--AAAGTAAACAC---GAG--AAGACGTGGT
i caeJap4.Scaffold17084 N 0 C 0

a score=-2676.000000
s ce10.chrX             4063700 21 + 17718866 --GAGCAGCGGGGAAAATCGCCG---
s caeRem4.Crem_Contig0  1060538 16 -  4500979 --ga-----atggAAGCAATGCT---
i caeRem4.Crem_Contig0  I 15 I 5
s caeSp111.Scaffold630  6030750 16 + 20921866 --GA-----GTATAAGAACTGCG---
i caeSp111.Scaffold630  I 16 I 4
s caePb3.Scfld02_0      2337333 17 +  4147112 --GA----TGGGGAAGAACTGCG---
i caePb3.Scfld02_0      I 16 I 4
s caeJap4.Scaffold17084  333849 21 +   375229 GAGA-----ATCAGAGGCTCGCGCAG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9164881 19 + 21540570 I

a score=39125.000000
s ce10.chrX             4063721 48 + 17718866 TGCTTCCGATTTGAATATCC------------GATGA------GAGACATCGGTGGAATGACGAAA-
s cb4.chrX              9164900 54 + 21540570 TGCTTCCGATTCGAATATCC------------GACAAGTGCTGGTGGTAACGGTGAAATTATGCaa-
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0  1060559 48 -  4500979 TGCTTCCGATTCGAATATCC------------GATGA------GCGGTAACGGCGAAATTATGCGA-
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6030770 48 + 20921866 TGCTTCCGATTCGAATATCC------------GATGA------GCGGTAACGGTGAAATTATGCGA-
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2337354 48 +  4147112 AGCTTCCGATTGGAATATCC------------GATGA------GTGGTAACGGTGAAATTATGCGA-
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  333870 61 +   375229 AACTTCCGATTTGGATATCCGCTGCTGATGAAGATGA------GCGGTGACGGTGACAGTGAGGAAA
i caeJap4.Scaffold17084 C 0 I 221

a score=3823.000000
s ce10.chrX             4063769 32 + 17718866 AAACTAGGGGAGGAA-----TAGGTTGAGAAAGAAGA
s cb4.chrX              9164954 35 + 21540570 aaaacaacattggaaaagacgaattagataaagaa--
i cb4.chrX              C 0 I 1902
s caeRem4.Crem_Contig0  1060607 31 -  4500979 AAAACAACatgggaga----gaaaaagataggAGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6030818 30 + 20921866 AAAACAACGTGagga-----taagaaaaaagaaga--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2337402 30 +  4147112 AAAACAACATGTgga-----tggagagaaaaaaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  333931 221 +   375229 I

a score=-2741.000000
s ce10.chrX             4063801 6 + 17718866 TGATTG----
s caeRem4.Crem_Contig0  1060638 6 -  4500979 TGAAAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6030848 3 + 20921866 ----tag---
i caeSp111.Scaffold630  C 0 I 43
s caePb3.Scfld02_0      2337432 6 +  4147112 ----tatacg
i caePb3.Scfld02_0      C 0 I 19
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I

a score=-4511.000000
s ce10.chrX             4063807  90 + 17718866 -TTGAAAAAAGTTTAGTTGATTGTTTTATTTACGTATTCAGT--------------GATTTTTTTAATTTGGTGATTTACTATGCATTTAGGGAGGG----GAGCTTGA-----------
s caeRem4.Crem_Contig0  1060644  49 -  4500979 GTGGAGAAGACG---ATGAATTGTACT-TACAAGTGTTTATT-----------------------------------------------------------GTGCATGCCTG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2337457 116 +  4147112 -TTGAAAAGACGT--TTGAATTGTACT-TGTGAGTGTTTATGTGTGGGCTATCccatttttttcgtattttgcaAATTGTTCTATTCTTTGAGCAGCAAAAGTGCGGGAATGGAACTTTC
i caePb3.Scfld02_0      I 19 I 165
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I
e caeSp111.Scaffold630  6030851  43 + 20921866 I

a score=-820.000000
s ce10.chrX             4063897 36 + 17718866 AATAGTTACCAAATTAGTTGCTGTACGCTTCTCAAC
s caeRem4.Crem_Contig0  1060693  7 -  4500979 ---AGTTtcc--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2337573 165 +  4147112 I
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I
e caeSp111.Scaffold630  6030851 43 + 20921866 I

a score=0.000000
s ce10.chrX             4063933 47 + 17718866 AGCAGAAGAGTGTCAGAAAGATTCAGAAATTTGACAGAAAGTTGCTC
e caePb3.Scfld02_0      2337573 165 +  4147112 I
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I
e caeSp111.Scaffold630  6030851 43 + 20921866 I
e caeRem4.Crem_Contig0  1060700  0 -  4500979 C

a score=-1325.000000
s ce10.chrX             4063980 96 + 17718866 CAAAGTGCCGATTAGGTGTAAGTGCTTGTAGCCG------TTTTTTCAGTTAAAAAATGTTTTGAAATACACAATTTATCTATTCTTTTTTCAATGAAGTGA
s caeRem4.Crem_Contig0  1060700 50 -  4500979 ------------------------cttttgtttt------ttttc------------tttcttgca------AATTGTTTTATTCTTTGAGCATTGAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6030894 64 + 20921866 ---------------TTGTAAGTGTTTATGTTTTCCAGgcttttt---------aaatattttgcA------AATCGCCATATTCTTTGAGCAC--------
i caeSp111.Scaffold630  I 43 C 0
e caePb3.Scfld02_0      2337573 165 +  4147112 I
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I

a score=-12278.000000
s ce10.chrX             4064076 100 + 17718866 AAAAAACGTGAAAAATTACTTGCTTAGTACGTGAAAATATTGTTTTAATAGT----------------------------TGAATATAT-----ATAAAAATA---TTGATAGAAC------TTATGTGGTCACTTTTTCAA--
s caeRem4.Crem_Contig0  1060750  52 -  4500979 --------------------------------AG----------------------------------------------TGCACAAAT-----GTTCCAATT---GCTACAAAACAgttatgtgttt------tttttttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6030958  49 + 20921866 ----------------------------AAATAG----------------------------------------------Tgcagaaaa-----atacaaatt---tttgttgaata-----ttgtat------ttttttta--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2337738 125 +  4147112 GATAAATTTGTAAGAtaact------gaaaacagaaatatgGCTCTATTAACCCTATTAAAAGAGCACTAGTCAGATTATTACAGAAACCAAGTATTCAGGTttcgtttttaaaaaa-----ttacgt------TCTGTTTG--
i caePb3.Scfld02_0      I 165 I 2
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I

a score=-4257.000000
s ce10.chrX             4064176 102 + 17718866 CCATCAATTTTGATACATCCACTAGAGAAGTAGTGGATGCACTTCTAAATAGTACAAATAGTG---AATGAGATTTGTATCAAAAATTGTTCAATAAACATAAAT
s caeRem4.Crem_Contig0  1060802  60 -  4500979 ------------------------agataaaatttagtttttttctgtaaactGAAATTGGCGGACGTTCTAATAGGCAACAGC---------------------
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2337865  99 +  4147112 CTGGGAACTTTTATCAAACCTTAGAAACTATATTTGCTGTGTTTCAAATAAGTGAAACTTGTAGTAAGCGTAATTGCTATTATCAA------AATAATCCTAAAC
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I
e caeSp111.Scaffold630  6031007   0 + 20921866 C

a score=0.000000
s ce10.chrX             4064278 5 + 17718866 TCCAA
e caePb3.Scfld02_0      2337964 0 +  4147112 C
e caeJap4.Scaffold17084  333931 221 +   375229 I
e cb4.chrX              9164989 1902 + 21540570 I
e caeSp111.Scaffold630  6031007 0 + 20921866 C
e caeRem4.Crem_Contig0  1060862 4 -  4500979 I

a score=-23666.000000
s ce10.chrX             4064283 96 + 17718866 -------------TTTAGAATTTCTGCTAGAAAAT--------TTAAAAAAATTGTAACTGGAACTTTCAAGCTATGAAAATCATTT---TAAATATTTCAAAAAATTTCTACATTTTTA
s cb4.chrX              9166891 88 + 21540570 -------------tttaacatttttctc---aaactaaaatttaaaaaaagattcta----GAAATGTAAAAAACTGAGATTCCAAT---TCAAgcatttcagtttttctc---------
i cb4.chrX              I 1902 C 0
s caeRem4.Crem_Contig0  1060866 64 -  4500979 -------------TTTAACAATTTT------AAAC--------AATGAAATATACT-------------------TGAGATTCCTTT---ATCGATGTTTAGGTGTTTTCCGT-------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  6031007 34 + 20921866 ----------------------ttc------aatc--------tAT-------------------------------GTTTTCCGTT--AAGACGCTTCTTAG-----------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2337964 87 +  4147112 ACTCATAgagcttttcaaaacttca------aatc--------tatCAGAAACCCT----------TTATCAGAGAAATAATctgttaaaaaatgatttttagtgatctca---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  333931 221 +   375229 I

a score=45015.000000
s ce10.chrX             4064379 445 + 17718866  
s cb4.chrX              9166979 419 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1060930 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6031041 448 + 20921866  
i caeSp111.Scaffold630  C 0 I 163
s caePb3.Scfld02_0      2338051 450 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  334152 441 +   375229  
i caeJap4.Scaffold17084 I 221 C 0

a score=-7201.000000
s ce10.chrX             4064824 21 + 17718866 -------------GCAAAATTTCATAATCTA--ACT
s cb4.chrX              9167398 14 + 21540570 -----------------CATCTCAGAGACCA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1061385 16 -  4500979 -----------------TATCTCAGAGACCAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2338504 18 +  4147112 -------------GCAACACTTCAAGTAACT-----
i caePb3.Scfld02_0      I 3 I 197
s caeJap4.Scaffold17084  334593 22 +   375229 tccaattattgATGTTCTATCT--------------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6031489 163 + 20921866 I

a score=-28377.000000
s ce10.chrX             4064845 213 + 17718866 GTATCAAAATTGAACAAGAAA-ACCTAGATAATAAATTGAAACTTCACAACAAAAATGATTATCCTGTTACTGATAAACAGTGTTTCAACATTTCAGTCATTGTTCTTT----TCTAAACTGC---------------CGGAAAACTCGAATTTTTGAAG-------------AAATCGCAACTCAAATTCAAAT-TGATA------AAAACTATTTGCACT-----TTAAACACACCGAAGTAT-ACTGtaaaaaaat
s cb4.chrX              9167412 184 + 21540570 -------AGGAGAACTAGAAATAGCTAAAT---------CAACTACTTGAAAGTGTTGAG---------------AAAGAGC---------------------CTTAGT----CCAAAACCAATCA---------GTGCGACATGTGAGAAATTGTCACA---------CTTTGTATTGATACATAAAATGGCGT-TATTAGTTTGGGTGATTACTTGGGATCAAGTTTATATTATTTCTAGGACAATTCTAGGACACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1061401 192 -  4500979 -------AGGGAAacgagaaa-atctgaaa---------ctcccACTTAAGAAATTTGAGTGTC-----------AGAGAGTG-----------CAGTAAACGCTTATTGGTGTCAAAACCAATCA---------GTAAGCCAAGTGTGGGCTTCacaaa---------------attgatatttgaatCAAGATATAACACCTCAAGGTATCACATGTAAT---GATTAGAGTTTACCTACaac-tttccagaatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  334615 173 +   375229 ----AATAGATGCTCaaaaaa-aGTT-------------CTTCTACTT-------------TTC-----------CACCAGt--------tcttcaaaatttgttttgt----ttcaagCACCTCAAAAAATGATGTGGAAAGAAAGTGCAATCAGCAAAGTCCAGCAGCTTCTTCTGCCGACCGAAAACAGCAT-T----------TAGACAATTTGCgaa-----ttggaaaaaagaaaat----------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2338522 197 +  4147112 I
e caeSp111.Scaffold630  6031489 163 + 20921866 I

a score=-5334.000000
s ce10.chrX             4065058 16 + 17718866 ----taaataaaaatt----tgat
s cb4.chrX              9167596 12 + 21540570 ----ATGATAAACTAC--------
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0  1061593 12 -  4500979 ----ttgattaagaAC--------
i caeRem4.Crem_Contig0  C 0 I 32
s caePb3.Scfld02_0      2338719 16 +  4147112 ----TAGATAGACTTTGGGA----
i caePb3.Scfld02_0      I 197 C 0
s caeJap4.Scaffold17084  334788 14 +   375229 gaagaaaataggAT----------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6031489 163 + 20921866 I

a score=825.000000
s ce10.chrX             4065074 6 + 17718866 atctta
s cb4.chrX              9167638 6 + 21540570 AACTag
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0  1061637 6 -  4500979 TTCTAT
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold630  6031652 6 + 20921866 ATCTAA
i caeSp111.Scaffold630  I 163 C 0
s caePb3.Scfld02_0      2338735 6 +  4147112 AGCTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334802 6 +   375229 ACTTTA
i caeJap4.Scaffold17084 C 0 I 81

a score=-27025.000000
s ce10.chrX             4065080 82 + 17718866 aaaatttCGAACAATACTATTATAAGTT-------------TGACCTTAAAATTTGTTATGA---------------------ACTATTCTTGACTTTAGACAAGAAATACAGTAC
s cb4.chrX              9167644 39 + 21540570 aa--------atgatttcaaaaaacgct-------------TA--------TTGGATTCCAA--------------------------------------------AGGACC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1061643 87 -  4500979 AACATT---GAAAGTCTTAAGAACTGGT-------------TAA-CTCCAGTTTAGTTACAGTGCTAGCCTTCGCTCTACTTATCT--------CGTTTCATACTTGGAACA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6031658 71 + 20921866 GAAAC-----ATCATTCTATCTGAGATTGGTTCCTGGTAACTAG-AACAGACTGGATTTGAA---------------------TCt--------catcaaaaaagc----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2338741 71 +  4147112 AAGCC-----TTGTTATTAAATCAGCTT-------------TAG-TGGAAATTTTGTTCCAT---------------------TCT-TCGAAACCATCAGAgaaatggagca----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  334808 81 +   375229 I

a score=197920.000000
s ce10.chrX             4065162 383 + 17718866 TCTAATAATCATCGGAAAATGAGCCTATCCT--ACAAAAATGTAAGAGCAGAACGTTGATGAGGTGTGAACG------------------CCATCCAACTTTTTTGCTTG-TTTTCGGTTGTTTGTGGAAGCAAAAGGC--AAAATAGTG--GAGCAAAGAGGACCAGGCAAGTGTGAAATTGACAGACA-----C--CCAAAT------ACACATACACACACTACCGCTCAACGAACGGAG--CTGATATTCACTC--CGttcttct--t-tctttttttcatcctcctct----cctgctcttttt---tc--cttctcattctcttGTGTCTTTGAAAATGAGTATGGGTGGCTAAAAA-GCGAAAAACGACACCACCACAAAAGG---AGGAGGAGGAAATAAAGGCAACGGGAAG--GAATGTTT-GGGAGACGCGAA----
s cb4.chrX              9167683 359 + 21540570 ---------------CAAAAGTGAA-ATATGTCATGGAAA-ACAAAACCAGAGTGTTGATGAGGTGTGAACGGACGTAAAAAGGCAGGGGGTGCCCCATTTTT-GGGTTG-TTTTTCGTTGTTTATAGAAGCAAAAGGCAAAAAATAGTG-----------GGACCAGGCAAGTGTGAAATTGACAGACA-----CTACCAAAA------ATACACAC---------CAGAAAACGGACGACG--CTGATATTCACTCAgcgttctttt--tcttcttttt-----cttcttccacacttattttcttt---tcgtcatctca-----ttctgtttttgaaaatgagtatGGGTGGCTGAAAA-GCGAAAGACGACAccacaaaaa--------gaagaagccagGAAAAG--------AGCCGAATGTTT-GGGAGGAGCGTC----
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1061730 335 -  4500979 ---------------GAAAAGAGCA-CCcag--acgaaaa-aaaacaacagaacGTTGATGAGGT-------------------------GTGCCCCATTTTC--GGTTG-TTTTCGGTTGTTTATAGAAGCAAAAGGCAAAAAATAGTGGGGGGCAAAGAGGACCAGGCAAGTGTGAAATTGACAGACA-----C--CCAAAT------CCACACATA--------CGCTCAACGAACGATG--CTGATATTCACTC--cgttcttct--t-tccttttt-----cttcttt----tttttttccttt---tc--catctCATTCTCTTCTGTCTTTGAAAATGAGTATGGGTGGCTaaaaa-gcgaaaaacgacaccacaaaag--------gaggaaaaaatgaaaag--------aa--gaatgttt-gggagaaacgaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6031729 348 + 20921866 ---------------aaaaaacacatttccA--GT------AAAACAACAAAACGTTGATGAGGTGTGAACGA-----------------GCgtcccattttt-cagttg-ttttcgGTTGTTTATAGAagcaaaaagc--aaaataGTG--GGGCAAAGAGGACCAGGCAAGTGTGAAATTGACAGACA-----C--CCaaatacacacacacacata--------cgCTCAACGAACGATG--CTGATATTCACtc--cgttcttcttct-tctttttt-----ctccttc----ttcttctcctttccttc--catctcattctcctctgtctttgaaaatgagtatGGGTGGCTAAAAA-GCGAAAAACGACACCACAAAAg--------ggaagaaattggaaagg--------AG--GAATGTTTGGGGAGGAGCGAA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2338812 326 +  4147112 ---------------aaaaagCACATATCta--gtgaaaagaaaacaacagaacACTGATGAGGTGTGAACGG-----------------GTACcaca-------------ttttcagttgtttatAGAAGCAAAAGGC--AAAATAGTG--AAGCAAAGAGGACCAGGCAAGTGTGAAATTGACAGACA-----C--CCAAAT------ACACACATA--------CGCTCAACGAACGATGGTGTGATATTCACtc--cgttcttct--t-tctttttt-----tttcttc-------------------ac--catCTCATTCTCCTCtgtctttgaaaatgagtatGGGTGGCTaaaaa-gcgaaaaacgacaccacaaaagaaag---aggacaaaaaaggaaagg--------ag--gaaTGTTT-GGGAGGAGCGAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334889 315 +   375229 TCCCAT---------GAAAAGCAGatgacga--gaaaaaaaaacaaagcagaGTGTTGATGAGGTGTGAACGC-----------------GCG---CACATTT-CGGttgttttttggttgtttaTAGAAGCAAAAGGC--AAAATAGTG--AGGCAAAGAGGACCACGCAAGTGTGAAATTGACAGACAGAGCTC--CCACCA------GCACA------------CGCACAGAGA-----G--CTGATATTCACTC--cgttcttct--t--------------attcttc-------------------gc--CTT--------------------AAAATGAGTATGGGTCGCTAAAAAGGCGAAAAACGACACCACAAAGGAATGTTTGGGAGGAGGTTGGGAAAA--------gt--gagtgaga-gagagagaaaaaagaa
i caeJap4.Scaffold17084 I 81 C 0

a score=-2715.000000
s ce10.chrX             4065545 21 + 17718866 --------AGCGTGTGCGCGCAGGCTTT-C
s caeRem4.Crem_Contig0  1062065 10 -  4500979 --------aaCGT-----------CTTTG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6032077  9 + 20921866 --------AGCGT-----------CTTG--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2339138  9 +  4147112 --------AGCGT-----------CTTT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  335204 17 +   375229 agcgaAGAAGCGA-----------TGTG--
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9168042 20 + 21540570 I

a score=84485.000000
s ce10.chrX             4065566 74 + 17718866 CCGTATTCCGTTCTTATTTCTGAATTAGAAGA-----CAAAG-AAATGTGAAAATTCGCATGATTAGAGAGAAGATATTC
s cb4.chrX              9168062 79 + 21540570 ccgTATTCCGTTCTTATTtctgaattagaaaaaagacaaaag-aaatgtgaaaattcacatgattagaaaaaagatattc
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1062075 74 -  4500979 CCGTATTCCGTTCTTATTTCTGAATTAGAAGA-----caaag-aaatgtgaaaattctcaTGATTAGAGAAAAGATATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6032086 75 + 20921866 CCGTATTCCGTTCTCATTTCTGAATtagaaga-----caaagaaaatgtgaaaattcaCATGATTAGAGAAAAGATATTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2339147 74 +  4147112 CCGTATTCCGTTCTTATTTCTGAATTAGAAGA-----caaag-aaatgtgaaaattcacATGATTAGGGAAAAGATATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  335221 71 +   375229 CCGTATTCCGTTCCCAATTCTGAATCAGA--------CAAAG-AGATGTGAAAATTCGCATGATTAAGAAAAggatattc
i caeJap4.Scaffold17084 C 0 I 1147

a score=-51125.000000
s ce10.chrX             4065640 483 + 17718866  
s cb4.chrX              9168141 196 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1062149 170 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6032161 180 + 20921866  
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2339221 176 +  4147112  
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17084  335292 1147 +   375229 I

a score=0.000000
s ce10.chrX             4066123 25 + 17718866 AAAAATTAAAAAAAACTATAATCCA
e caePb3.Scfld02_0      2339397  8 +  4147112 I
e caeJap4.Scaffold17084  335292 1147 +   375229 I
e cb4.chrX              9168337  0 + 21540570 C
e caeSp111.Scaffold630  6032341  3 + 20921866 I
e caeRem4.Crem_Contig0  1062319  0 -  4500979 C

a score=84341.000000
s ce10.chrX             4066148 312 + 17718866 AATCTCTGATTCATGGAA-----AAAATTTACAAGCTATTATTTTTTTCGGCAGGTGAGTGTAAACCTATAATGATTGATGACAAATCCGGTCCCC----------------GCACAATATCCTCAAAATACTCGAAAAACAAAAAGCAAGCAATTTGTTTTTGAGAA------------CTCGGAGAGC------ATTACAAA-----AACGTGTTGC----ACAG----------TAATAATATGAAA----TTGTCTCCTACGTG----TGCTCTTACACTTTACCGGAAATCATTGTGCTCA-----AAGAAGAG-------GTCTTGCACTTTTTTCTTGCG-ATATCG---TGTGGAAAGTGTAAAAAAATTCCTAACAAAAAAACAT
s cb4.chrX              9168337 309 + 21540570 --------ATTcatgaaa---taaaa----atagga----------------------GTGTAAACGTATAATGATTGATGGATGATCAGATCTGTATGTTTGCGTGTGTGTGCACAATA--Ctcaaaatacttgaa--------------aaatttg-ttttgagaGTGAGGGTTCTACTAAAACAAACTGGAATATTTCTTGAGCTTCTCATCTTGC----AAAAACTAGAGGTCTAATAAcac-----cttttttttcctctcct---------gTGCTCTTTGCCGGAAATTATTGTAGTCC-----GCGAGAAG---GGTCTCCTTGAACTTTTTTC---CCGATATCGAGTGGTGGAAAGtgt--gaaatttttccagaaaaatatgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1062319 331 -  4500979 AATTTCTgattcatgaaaatgaaaga----acaaGA------TTTTCTCG------CGGTGTAAACCTATAATGATTGATGGATGATCAGGTCTGT--------GTTTGCTTGCACAATA--CTCACAATACTTGAAAATACACAATTTTGAAGATTG-TTGTGAGAG------------CAGAAGAAGCTGGAAtattttttg-----ccgattttgc----aaaaaatatttagttcATAACACGGAATCTTGTGTCTCTCCCCCTTCTCTATTCATGCTTTTTGCCGGAAATCATTGTGGTCC-----CGGAAAAG-GAGGTCTCCTTGAACTTTCTTC---CC-ATATCG---TGTAGAAAGtgt--gaaaactttcaaaaaaaaaacat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6032344 310 + 20921866 AATTTCCGATTCATAGAA-----AGA----ACAAGA------TTTTTTCG------CTGTGTAAACCTATAATGATTGATGGGTGATCAGGTCTGT--------GTTTGCTTGCACAATT--CTCATAATACTTGAAAACACACAG-TTAGATGATTG-TTTTGAGAGAAT---------------AAGCTGGA--ATTTCGCA-----GCTATTttgcagaagaaaaaaaactttcgcATAACAAGACA-ATTTCGTCTTTTCTCTG---------ATGCTCTTTGCCGGAAATCCATGTAGTCC-----GGGAAGCGGGAGGTCTCcatgaacttttttc---cg-atATCG---TGAGGAAAGTgt--gaaaattgtcaaaaaaa-----t
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2339405 320 +  4147112 AATTTTCGATTCATAGAA-----AGA----ACAAGA------TTTTTTCG------CGGTGTAAACCTATAATGATTGATGGATGATCAGGTCTGT--------GTTTGCTTGCACAATA--CTCAAAATACTTGAAAATacacaattttgaagattg-ttTTGAGAGCCT---------TGAGCAAAGCTGGA--AATTCACG-----GCcatcattttgcaaaaaaaaaacttgctcaTAACAAGAAA-TATTTCTTCTCCCCCTG---------GTGCTCTTTGCCGGAAATCATTGTGGTCCCGGAAAGGAAGCGGGAGGTCcccttgaacttttttc---cg-atATCG---TGTGGAAAGTGT--GAAATTCCTT--AAAAA-----T
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084  335292 1147 +   375229 I

a score=150141.000000
s ce10.chrX             4066460 241 + 17718866 ATTGAGAGGGAGGAGA--TGAATAGAGCATTGACC-----TTAGAAGCGGAAATTTCGCCACACTTCAGAGCACTCCAA-AGATTCCAATGTCCAACAGT------GGATCTCTTT-TGGATGTTTTCATC---------------GAGTTT--GGCAAGAAGGAAT-------------GCGCGAGTGAAT----------AA---AAG--------------AAAGAAAAGAACAAGC---AATTTTGT-GTGGTGTGGGAACTTC------ACTCATAC--TTTGTCGATG----ACATACTTCAAGTGT-CCATCAATAATTGAAA
s cb4.chrX              9168646 269 + 21540570 ATAAAGGAAAAAGAAT--TGAGGAGGGCATTGACC-----TTAGAAGCGGAAATTTCGGCACACTTCAGAGCACTTCAT-AGCTTCCAAAGTCC-AGGCTATCTGGAGATCTCCGG-GGCCTGTTTTCTTC------------TGTccttttctgagaaaaatgaaaagaagaaaaag--aagagaatgaataaaatggagaaa---aag--------------------aagaacaagcaATAATTT--T-GTGGTGTGGGAACTTC------ACTCATAC-TTTTGCTGATG----ACATACTGCAAGTGTCCCATCAATAATTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1062650 231 -  4500979 aaagagAGGGAGGAGA--TGAAGAGAGCATTGACC-----TTAGAAGCGGAAATTTTAACACACTTCAGAGCACTTCAT-AGATTCCAAAGTCC-ACGCT------GGATCT------GCCTGTTTTCTTC------------TTAgtcttttcaagaaaattgaaa-------------aagagaatgaat----------aa---aag--------------------aagaacaagC---AATTT--T-GTGGTGTGGGAACTTC------ACTCATAC---TTGCTGATG----ACACACTTGAAGTAT-CCatcaataattgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6032654 234 + 20921866 ataaggAGGCGAGAGA--TGAGGAGAGCCTTGACC-----TTAGAAGCGGAAATTTTGCCACACTTCAGAGCACTTGAT-AGATTCCAAAGTCC-ATGCT-----GGGATCTCCT---GCCtgttttcttc---------------gtcttttcagaaaatgaagag--------------agagagtgaat----------aaaagaag--------------------aagaacaagc---aATTT--T-GTGGTGTGGGAACTTC------ACTCATAC---TTGCTGATG----ACATACTTCAAGTGT-CCAtcaataattgaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2339725 231 +  4147112 ATATGGAGGCATGAGA--TGAGGAGAGCATTGACC-----TTAGAAGCGGAAATTTTGACACACTTCAGAGCACTTCAT-AGATTCCAAAGTCC-ATGCT------GGATCTCCT---GCCTGTTTTCTTC---------------GTATTtccaggaaagaagaag-------------aagagagtgaat----------aa---aag--------------------aagaacaagC---AATTT--T-GTGGTGTGGGAACTTC------ACTCATAC---TTGCTGATG----ACATACTTCAAGTGT-CCatcaataattgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  336439 298 +   375229 ATTGTAAGGGACGAAATCTGAAGAGGGCTTTGACCTTACGTTAGCAGCGGAAATTCTGACACACTTGAGAGCACTTCATAAGATTTCATAGTTC------------GGACCTCTCTATTCTAGTTTTCTGCACGCTTTCCGGAATGTAATTTTCAGgataaaaaaag-gaagaagaagtagAAATAATGAAA----------AG---AAACAACGCGTGTAGGGAGAAGTATGTACATGT---AATTT--TCAGGGTGTGGGAACTTTGTCACAActcttacttttttttgatgaCATACATACTTGAAATGT-TGATAAATTATTAAAA
i caeJap4.Scaffold17084 I 1147 I 206

a score=21071.000000
s ce10.chrX             4066701 32 + 17718866 AA----TGCTCAGGGAAACCAAAATGTTCAAGTGGT
s cb4.chrX              9168915 36 + 21540570 AACCCGTCCCGAGGAAAACCACAATGTTCAAGTATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1062881 32 -  4500979 aa----tgctcaGGGAAACCAAGATGTTCAAGTGGT
i caeRem4.Crem_Contig0  C 0 I 499
s caeSp111.Scaffold630  6032888 32 + 20921866 aa----ttctcagGGAAACCAAGATGTTCAAGTGGT
i caeSp111.Scaffold630  C 0 I 311
s caePb3.Scfld02_0      2339956 32 +  4147112 aa----tgctcagGGAAACCAAAATGTTCAAGTGGT
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  336737 206 +   375229 I

a score=-1036.000000
s ce10.chrX             4066733 49 + 17718866 AGAGA-------TTTGATTA----ATGTGCAAGATTCAAGAGTTGAACTTTGAGAACTAG
s cb4.chrX              9168951 45 + 21540570 AGgagcaaattttttgatcagcTTAgga-----------ga----tatttttaaaaaaac
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2339990 45 +  4147112 TGGAA-------TTCGATCA----AGGAAAAGAAATCGGGA----AACTTCAGGAAATAG
i caePb3.Scfld02_0      I 2 I 422
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeSp111.Scaffold630  6032920 311 + 20921866 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=-5341.000000
s ce10.chrX             4066782 962 + 17718866  
s cb4.chrX              9168996 708 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2340035 422 +  4147112 I
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeSp111.Scaffold630  6032920 311 + 20921866 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=-1107.000000
s ce10.chrX             4067744 51 + 17718866 TTTTAATACTGC-GAATGATGTTCACGTCATCAACACCTCCTATAATGGAGT-----------
s cb4.chrX              9169704 50 + 21540570 atTTAGCAATGCCAAAAGATA-----------AAAAC--ggcaaaatcgaaaattcctctggc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2340457 49 +  4147112 TTTTTATACTGCTAAGCAACGTT---GTCACCAAAACTTTGTAAAatagaat-----------
i caePb3.Scfld02_0      I 422 I 34
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeSp111.Scaffold630  6032920 311 + 20921866 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=-636.000000
s ce10.chrX             4067795 43 + 17718866 TCTTACCAAAATTTATATTTTAAGTAACCAAAATAAAATGCAT
s cb4.chrX              9169754 28 + 21540570 -----ccagaa---aaatttt-----gccaCTACCAAGTAT--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2340506 34 +  4147112 I
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeSp111.Scaffold630  6032920 311 + 20921866 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=-2542.000000
s ce10.chrX             4067838 38 + 17718866 -------AATCTTACT-TAGTATAAAAATATGAAGTAGACTACAAA
s cb4.chrX              9169782 23 + 21540570 -------ACTTTTCTT----TGTCTATATACTCA------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2340540 40 +  4147112 AGTCTCAAGTTTCACTAAAATGGAAAGATAGGCG------TGCGAA
i caePb3.Scfld02_0      I 34 I 5
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeSp111.Scaffold630  6032920 311 + 20921866 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=-43.000000
s ce10.chrX             4067876 8 + 17718866 ATAGTGCA
s cb4.chrX              9169805 6 + 21540570 ACATTG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6033231 8 + 20921866 aTACTGGC
i caeSp111.Scaffold630  I 311 C 0
s caePb3.Scfld02_0      2340585 8 +  4147112 GCATTGGC
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold17084  336737 206 +   375229 I
e caeRem4.Crem_Contig0  1062913 499 -  4500979 I

a score=9328.000000
s ce10.chrX             4067884 50 + 17718866 GAATAATCCGCCTTTCTCTAT---TAGGC-------AACATGACAATTAGGCA--------AAGTCAT
s cb4.chrX              9169811 25 + 21540570 ------------------------------------AATATGGCAATTAGGCGGA------AAGGCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1063412 64 -  4500979 GAATAATTCGTCTTTGTCTAT---CTAACTACATTGAATATGACAATTAGACGGACCGCCGCAGACA-
i caeRem4.Crem_Contig0  I 499 C 0
s caeSp111.Scaffold630  6033239 62 + 20921866 AGATAATCCGCTTTTGTCTACTATCTAACTACACTGAATATGGCAATTAGG-----CGGACAAGGCA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2340593 64 +  4147112 AAGTAATCCGCTTTTGTCTAC---CCAACTACATTGAATATAGCAATTAGAGTGACCGCCCAAGGAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336737 206 +   375229 I

a score=45636.000000
s ce10.chrX             4067934  99 + 17718866 TGTTGAAGGTTCTGG--CTTTTTATTGTCTGTGGAATGCTAATTGAGCTATA---GTCAGTTTTAATCAAATAATGAGACTCCGAGGG-------TATAGAATTTGAG---TTA---
s cb4.chrX              9169836  91 + 21540570 --ACGAGCCTTC-------TGTTATTGTCTGCAGAATGCTAATTGACACATAGAGGCGAGTTTTAATCAAATAATGACACTCGCGTAA----------A-AGTTTGGGGTA------
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0  1063476  90 -  4500979 --TCGAAGCTTCTGT--CTTGTTATTGTCTGCAGAATACTAATTGACACATA---GCTACTTTTAATCAAATAATGACACTCGCGGAA----------AGAGTTTGG----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033301  89 + 20921866 --ACACAGCTTCTTGCATGTGTTGTTGTCTCCAGAATGTTAATTGAGACAGA---GTCCGTTTTAATCAAATAATGACACTGGCCGAG--------------TATGGG---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2340657 101 +  4147112 --TTGGAGCTTCTGG--TGTGTTATTGTCTGCGGAATGCTAATTGACACATA---GTCACTTTTAATCAAATAATGACACTCGCTGGGATGAGACGGAAGACTTTGGG---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  336943 102 +   375229 TGATGAAGTTTCTGG--CTTGTTATTGTCTTCAGAATGCTAATTGTGAGAAA---GCCAATTTTAATCAAATAATGACACTTGCGGAG----AGCAAAACCACCCGAG------CCA
i caeJap4.Scaffold17084 I 206 C 0

a score=-8879.000000
s ce10.chrX             4068033 31 + 17718866 GTAGTCAAGTTTCTAAAC--TTGCACTTATTAT
s caeRem4.Crem_Contig0  1063566 21 -  4500979 GTAGTCGA------------CTACGGGTATGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033390  6 + 20921866 -TAGCTG--------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2340758  6 +  4147112 -AGGTTG--------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  337045 19 +   375229 --------------AAACGAAGACACATATTAT
i caeJap4.Scaffold17084 C 0 I 32
e cb4.chrX              9169927 26 + 21540570 I

a score=-693.000000
s ce10.chrX             4068064 15 + 17718866 ACTCCATCTAGTCAG
s caeRem4.Crem_Contig0  1063587  4 -  4500979 TTTC-----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2340764  0 +  4147112 C
e caeJap4.Scaffold17084  337064 32 +   375229 I
e cb4.chrX              9169927 26 + 21540570 I
e caeSp111.Scaffold630  6033396  0 + 20921866 C

a score=-6735.000000
s ce10.chrX             4068079 28 + 17718866 AAAGTTGATAGAAAAACCGAATTATTTA
s cb4.chrX              9169953 14 + 21540570 ------------AAAGTTTGga--tcga
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0  1063591 11 -  4500979 ---------------ATTAATA--ACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033396 28 + 20921866 GAGGCTACCATAGgaattgtttcattca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2340764 26 +  4147112 GATGGATTCCTAACTATTGAGT--TTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  337064 32 +   375229 I

a score=52482.000000
s ce10.chrX             4068107 269 + 17718866 AAAATATGGCAGATGCCCAGTGAGTGGACTAAATCCGCAAAAATATGGAAACGTATCG--------------------AGTGTGACAAGT-AAGT--------ACTCGTTCGACTTATCTATCTAGCCGACACAACGGAGCACTCTTTGTCATCCTAC--ATCATC---TTTTTCTGTTTTGTTTCTTTTCCACACTGCTCATTGTGTTTGTCTGAATGGAACCGGAGCACTCCTCCCCGTATATTAAGACAATTGATAGATGAAGCATGATGCGTTTTCCACGAGGCG---------GCATATGTTGCATT
s cb4.chrX              9169967 209 + 21540570 aaaacaaaat----------agaaGGTTTTAAACT-AAACAAGGACTTGTCTAACTTC----------------------------------------------TTCGTTCGACTTATCTATATC-------CAACGA-------CTCGtcatccttcttttctttgtgttgtttcgttttttctttttccc-----gcTCATTGTGTTTGGATGG--GAGC--------CCCCGCCACG-ATATTAAGACAATTGATAGATGAAGCATGATGT--CTT------GGCAATCTATC--GTGGCTAT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1063602 263 -  4500979 GAGCCATATTGGA-----GAAGACagttttaaattaaaacaaaaatgaaaacaaatcc--------------aaaaaagGTTGGATAAAG-AAGG--------ACTCGTTCGACTGATCTATCTCGTCG--ACAACGAAA-AATTCCCGTCatcctttttcctctt---tttcttctttttgtttctttccc--aCTGCTCAATGTGTTTGTCTGAATGGTG--------CCCCGCCACG-ATATTAAGACAATTGATAGATGAAGCATGATGC--TCTCAACGAGGCGGTCTATT--GCAAGTGTTGCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033424 266 + 20921866 aaaggatatcag--------agaaggaaaagagatgaggaatacccaaaaacaaaaaac----------aaaagagaaggTCTACGGAAG-AAGGACAAGTTTATTCGTTCGACTTATCTATCGAGTTa--aaaa--aaa-GCGTCTTCTCAtccttctcttcatc---tttttt-----tgtttcttttcc--actGCTCATTGTGTTTGTCTGAATGGAG--------CTCCGCCACG-ATATTAAGACAATTGATAGATGAAGCATGATGC--TTTCAACAAGGCGGTCCATT-GGCAAGTGTTGCATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2340790 265 +  4147112 GAAGTAAAGCGC--------AGATCGATTAG---Tcaggaaaatgtgaaaacaaacaa----------------aaaaggtctGAAGATGCAAGAATAAGTTTACTCGTTCGACTTATCTATCTTGCAG--ACAACGGAA-GCTTCCCGTCAtccttctcttcatc---ttctttttttgtgtttcttttcc--ACTGCTCATTGTGTTTGTCTGAATAGAGC-------CCCCGCCACG-ATATTAAGACAATTGATAGATGAAGCATGATGC--TTTCAACAAGGCGGTCTATT--GCAAGTGTTGCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  337096 232 +   375229 -----------------------AAGATTTGA--TAGGAGGCCagtgaaaacaaaacacatctcgataaaaaagaaaacatttaacgaggcaaaaaaataacagcTCGTTAGTTCCA--------------ATCACTAAA---CTTATGCCATGCGCC----CGTA---TTTT-------TATTTCTCTTC---ACTGCTCATTGGAGCCTTCCGA--------------C----ACACA-AAATTAAGACAATTGATAGATGAAGAATGATGT--CTTCAACATGGAGGTCTCCTCCGCAAGTGTTGAACT
i caeJap4.Scaffold17084 I 32 I 26

a score=-3052.000000
s ce10.chrX             4068376 28 + 17718866 GGGGGCGCGA-----TTACGCGTTGACATTTGT
s cb4.chrX              9170176 16 + 21540570 -------CCATTGTCTTTTACAC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1063865 31 -  4500979 CTCAGTGTCTTTGTGTTTTACAC-gacattt-t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033690 26 + 20921866 CTGGGTGTCT-----TTTAACAC-GACGTTT-T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2341055 26 +  4147112 CTGTGCTTCT-----TTCAACAC-GACGTTT-T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  337328 26 +   375229 I

a score=22958.000000
s ce10.chrX             4068404 65 + 17718866 CGCTTGTTCTCGTCAATAAA--TTCTGGCATATTTCCGCAATCAGGATTTTGATCA---GCGACAA--GTGT
s cb4.chrX              9170192 65 + 21540570 ---TTGTTCTCGTCAATACATTTTGT-GTATGTTTTTCC-TACACCAATTGGTCCGCGAGAAACAA--GTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1063896 60 -  4500979 cttttgttcccATCAATAAA--TTGT-GTATGTTTTTT----CACCACCTGGTTCG---GCAACAA--GTGT
i caeRem4.Crem_Contig0  C 0 I 262
s caeSp111.Scaffold630  6033716 63 + 20921866 CTCTTGTTCCCATCAATAAA--TTCt-gtctgtttttt--tccaCCGCCTGG-CTT---GTAACAAGTGTGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2341081 60 +  4147112 CTCTTGTTCCTATCAATAAA--TTGT-GTATGTTTTTT----CACCACTTGGTCCC---ATGGCAA--GTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  337354 52 +   375229 CAATTGTTTCCATCAataat--ttct-----gtttttc--------attttgcttc---GCAACAA--TTGC
i caeJap4.Scaffold17084 I 26 C 0

a score=-5354.000000
s ce10.chrX             4068469 21 + 17718866 ------------CAAGGAAGTGAACAAAATAA-A----
s cb4.chrX              9170257 18 + 21540570 ---------------GTAGGTGGGAAAAAGGAT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6033779 20 + 20921866 ------------GGAGGCGGTGAttaaattga------
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2341141 20 +  4147112 ------------GGAGGTGATGATAGAATAGA------
i caePb3.Scfld02_0      C 0 I 2229
s caeJap4.Scaffold17084  337406 36 +   375229 CAATCAGTCGGAaggaaaaattatgaaaaaga--tGCA
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=409.000000
s ce10.chrX             4068490 3 + 17718866 TTT
s caeSp111.Scaffold630  6033808 3 + 20921866 TTG
i caeSp111.Scaffold630  I 9 C 0
s caeJap4.Scaffold17084  337442 3 +   375229 TTT
i caeJap4.Scaffold17084 C 0 I 396
e caePb3.Scfld02_0      2341161 2229 +  4147112 I
e cb4.chrX              9170275 0 + 21540570 C
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=-1122.000000
s ce10.chrX             4068493 80 + 17718866 ACGAGGACCAGTGACAATTTCTGATTTTTTTCAGTTGACCAAAA---------ATAAGAATTGTCGAAAAAATTTGTGAAAAAAGTCAT
s cb4.chrX              9170275 48 + 21540570 -----------TGACAATT----AT-----------AATGAA-----------GCAGGAAATgttaaaa----ttgcaaaaaaagtcCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6033811 72 + 20921866 ATGGGAAC---CAACACTA----ATTTCcttcag--aatgaaaatgcaATTCGGAACAAAACGTT--------TGGTGAATGaaaccat
i caeSp111.Scaffold630  C 0 I 86
e caePb3.Scfld02_0      2341161 2229 +  4147112 I
e caeJap4.Scaffold17084  337445 396 +   375229 I
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=91.000000
s ce10.chrX             4068573 1 + 17718866 A
s cb4.chrX              9170323 1 + 21540570 A
i cb4.chrX              C 0 I 127
e caePb3.Scfld02_0      2341161 2229 +  4147112 I
e caeJap4.Scaffold17084  337445 396 +   375229 I
e caeSp111.Scaffold630  6033883 86 + 20921866 I
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=0.000000
s ce10.chrX             4068574 522 + 17718866  
e caePb3.Scfld02_0      2341161 2229 +  4147112 I
e caeJap4.Scaffold17084  337445 396 +   375229 I
e cb4.chrX              9170324 127 + 21540570 I
e caeSp111.Scaffold630  6033883  86 + 20921866 I
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=667.000000
s ce10.chrX             4069096 30 + 17718866 TCGAAATTTTTGAAAAAATCATCGAATTCA
s caePb3.Scfld02_0      2343390 28 +  4147112 tcgaaatttctgcctaattta--aaatttg
i caePb3.Scfld02_0      I 2229 C 0
e caeJap4.Scaffold17084  337445 396 +   375229 I
e cb4.chrX              9170324 127 + 21540570 I
e caeSp111.Scaffold630  6033883 86 + 20921866 I
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=-489.000000
s ce10.chrX             4069126 4 + 17718866 TAGG-
s cb4.chrX              9170451 4 + 21540570 TAGA-
i cb4.chrX              I 127 C 0
s caePb3.Scfld02_0      2343418 4 +  4147112 -aaag
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17084  337445 396 +   375229 I
e caeSp111.Scaffold630  6033883 86 + 20921866 I
e caeRem4.Crem_Contig0  1063956 262 -  4500979 I

a score=-383.000000
s ce10.chrX             4069130 20 + 17718866 -AACTTCCATTTTT---AAGATAG-----------
s cb4.chrX              9170455 23 + 21540570 -AGCctcaatttctggaaaattcc-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064218 20 -  4500979 -AATTTCAGTTCTT---AAAATCG-----------
i caeRem4.Crem_Contig0  I 262 C 0
s caePb3.Scfld02_0      2343426 32 +  4147112 aactttcagatttg---aaaatgcCTATGTGACAG
i caePb3.Scfld02_0      I 4 I 1
e caeJap4.Scaffold17084  337445 396 +   375229 I
e caeSp111.Scaffold630  6033883 86 + 20921866 I

a score=5932.000000
s ce10.chrX             4069150 234 + 17718866 -------------TTTTCAAGATTCAAGATTGGCGTCTCA-AAAACAATTGCG------------------TTTGAA-AGTGACAGGGAAATGGGAACGCTTTTGTTATCTTTCAGATTTCAGAATTAACGTCTCCAGTTTTCCCGACTGGCA-----------------AAAATCGGAA-TGG--AAAAGGTGG--AGATGAAAATGTA-------------------GATT-------------------TTTTGGCTACTTATCAAAGAAAAATCGAT--AGA---GAATTGTTTGCAGAAAAAATACTCACTGGCCACCCTCGTCAAA
s cb4.chrX              9170478 184 + 21540570 taCTTGTC----TTTTCA---------GATTGACAAAATG-TAAACAA----------------TCGGCATTTTCAAGAGTGACATGGAAATCA------------------CTGTGTTCCAAATTTGac----------------------------------------aaggctgaaaatga--aagaaacagtgaaatgacattttt------------------agatt-------------cttaaattctatGCAATC------AAGGAATCAATA-AGG------------------AAAAAAT--GCTGGCCACCCTtgtagac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064238 279 -  4500979 TTTCTGTCACGGTTTTCCGATTGT---GATTGACGACTTG-AAAACAATAGACCAACGTTATTCTCGGCGTTTTGAA-AGTGACATGAAAATGA------------------CTGGGTTCCAGATTTGATGG--------------ACTGGAAGTGGAactgaattgagaaaaatcggaaatgg--AAGGAA-----AAACGTCATTTCGTTGGGTCAATCGAGGAAAAGATTCAATCTTTCTTCACCtaggttttaaaaaatc------ataaaatcaaCG-Agggatgtttttttttgcagaaaaatgt--aTCGGCCACCCTTGtccac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6033969 232 + 20921866 -------------TTTTCAATAGT---GATTGACGACTTG-AAAACAATAGGGCTCAGCTATTCGACGCGTTTTCAG-AGTGACACGAAAATGG------------------CTAGGTTCCAAATTTGACAGCTTC--CCATCTTGGCTGGAAGTATGgcagaatgaag-aaaatgggaa------aataaaCTT---GTCGTTAT------------GTTA--------ATT-------------C-----TTTTGCAGAATAC-----ATGGAATCAATA-AGT---GACTCTgtagttgaagaaaaac-----ggacACTCTTGTTGTC
i caeSp111.Scaffold630  I 86 C 0
s caePb3.Scfld02_0      2343459 250 +  4147112 -------------TTCCCGATAGT---GATTGAcgacttgaaaaacaattgggCCTGG---------GAGCTTTGAG-AGTGACAAGAAAATGG------------------CTGGGTTCCAGATTTGACGGCTTCTTCCATCTTAACTGAAAgt-----ggaattgag-aaaataggaaatggGTAAGAAACGTC-AGACGTCATTTGG--------GTCACGGAACGcatt-------------c--gaattttgaagatttc---ggaaaaaatcgatgtagg---gacttttttgcagaaaaaaagc--aatggcCACCCTTGTCGTC
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084  337445 396 +   375229 I

a score=104649.000000
s ce10.chrX             4069384 223 + 17718866 AAA----AGAAGAGTTCCACA------AAAAATT-G----GGAAAATGAAATTGAGTGTGAAGAATGAATGCGAGAACAAAGGCGACAAGCA---TCTCAT--------CTCGTCAACGACTTCTGAGACGCAGTTA---------------------------GCAGAACGAGAG-----------GGATGATTTGTCAAAAGCACATCCTCGGTTC-----TTCACACACACCACAAAATGTTTTGAGCC--------AGATGG---------AATAAAATATAAAATAGG-------ATGAGATCT--------------TTGTCTA
s cb4.chrX              9170662 305 + 21540570 aaaaaagaaaagagttcTACTCAGCccaaaaattgg----ggaaaatgaAATCGGGTGCGAAGAATGAATGCGAGAACAAA-GCGACAAGCATCTTCTCATCTCATCTCCTCGTCAACGACTCC-GAGACGTag-aagcacaagttgatgaagaagaaaaggatgaacaagaagaagaggaaagaatgaatgaTTTGTCAAAAGCACATTCTCAGTGC-----CTCATAC-CACCAC-AAGTGTTCACTACC-CATA---AACAGC--TTCTTTGTGAAAAATGTCCCActggagaaaaaatgaaatctgg-----CTTCGGTTTCTTCA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1064517 241 -  4500979 aa-----aaaaaagttccacgtctcgaaaaaatt-g----ggaaaatgaaattgggtGCGAAGAATGAATGCGAGAACAAA-GCGACAAGCA---TCTCATCTCAT---CTCGTCAACGAATTC-GAGACGCag-aa---------------------------gaacgagaagaaaaga-------gaatgatTTGTCAAAAGCACATCCTCAGTGCCAGCTCTCA----CACCAC-AAGTGTTCAGAGCCGCATA---AAAAGCAGTACCC----AAAAATAT--TACCGG-------ATGGAATCTAG---------------TCCA
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold630  6034201 214 + 20921866 A------AAAAGAGTTCCACATCTCacaaaaatt-g----ggaaaatgaaattgagtGTGAAGAATGAATGCGAGAACAAA-GCGACAAGCA---TCTCATC-------CTCGTCAACGACTTC-GAGACGCAG-AA---------------------------GCACTAAGAGAAAGGC-------AAATGATTTGTCAAAAGCACATCGTCAGTTC-----CTCA----AACCAC-AAGTGTTCAG------------AACAGC---------AAAAAAGTGTC--------------ATGAAACACAG-------------TTCTTG
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2343709 248 +  4147112 -------AAAAGAGT------TCTcacaaaaatt-g----ggaaaatgaaattgggtGCTAAGAATGAATGCGAGAACAAA-GCGACAAGCA---TCTCATC-------CTCGTCAACGACTCC-GAGACGCAG-AA---------------------------GCAGAAGGAGAAAAGC-------GAATGATTTGTCAAAAGCACATCCTCAGTGC-----CTCA----CACCAC-AAGTGTTCAGAGCCACATAAAAAACAGcagtatccaaaaaaaagtgccagatgga-------atgaaatgaaatggaaatcgggattttttg
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  337841 191 +   375229 ----AAAACAAGAGTTCTCAG-----CACAAACT-GGaatggaaaatgaaatttaggACGGAGAATAAAGGCGAGAACAAA-GCGACAGGCA---TCTTGT--------CACGTCAACGAGTTT-GAGACGTAG-CA--------------------------------------------------GGATGATTTGACAAAAGCACATTCTCGGTTC-----CT------CACCAC-AAGTGTTCGGCACCGCATA---AACACC--------------AGTATCCATTC---------TTG---------------------------
i caeJap4.Scaffold17084 I 396 C 0

a score=422.000000
s ce10.chrX             4069607 1 + 17718866 T
s cb4.chrX              9170971 1 + 21540570 T
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold630  6034418 1 + 20921866 t
i caeSp111.Scaffold630  I 3 I 2
s caePb3.Scfld02_0      2343960 1 +  4147112 t
i caePb3.Scfld02_0      I 3 I 43
s caeJap4.Scaffold17084  338032 1 +   375229 C
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1064758 47 -  4500979 I

a score=-3064.000000
s ce10.chrX             4069608 23 + 17718866 CATTTTCAAT-----AGGCAGATTGAAT
s cb4.chrX              9170972 20 + 21540570 CACTCTTTGA-----ATGCCGAATA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6034421 18 + 20921866 --ttttgtga-----aattatAATA---
i caeSp111.Scaffold630  I 2 C 0
s caeJap4.Scaffold17084  338033 24 +   375229 CATTCGCCGACGGGCAGATGAAAT----
i caeJap4.Scaffold17084 C 0 I 59
e caePb3.Scfld02_0      2343961 43 +  4147112 I
e caeRem4.Crem_Contig0  1064758 47 -  4500979 I

a score=-2799.000000
s ce10.chrX             4069631 42 + 17718866 CCTTCAAAAAAAAATTCGGAACAAGGAAACGTAATTTTTTTA
s cb4.chrX              9170992 17 + 21540570 --TCCAAATTTAGATTCCA-----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6034439 14 + 20921866 --T---GAgataaataaaa-----------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2343961 43 +  4147112 I
e caeJap4.Scaffold17084  338057 59 +   375229 I
e caeRem4.Crem_Contig0  1064758 47 -  4500979 I

a score=-4360.000000
s ce10.chrX             4069673 6 + 17718866 ----AA--GGTC
s cb4.chrX              9171009 3 + 21540570 ---taa------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064805 6 -  4500979 CAGATA------
i caeRem4.Crem_Contig0  I 47 C 0
s caeSp111.Scaffold630  6034453 6 + 20921866 --caaatt----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2343961 43 +  4147112 I
e caeJap4.Scaffold17084  338057 59 +   375229 I

a score=-6710.000000
s ce10.chrX             4069679 15 + 17718866 -----------ttaaaataattttta
s cb4.chrX              9171012 17 + 21540570 ttcacaaatt-caaaa--------at
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064811 18 -  4500979 TTGACATACtattgaa--------ga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034459 15 + 20921866 ----------ctaaaattaacca-ga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344004 16 +  4147112 ----------CTAGAATAAAATGTGA
i caePb3.Scfld02_0      I 43 C 0
e caeJap4.Scaffold17084  338057 59 +   375229 I

a score=-20822.000000
s ce10.chrX             4069694 63 + 17718866 aaaagaaataa--aatGGGAGCCTCGAGAAAGAG--AGTCTCATGCTTCAATCAAAAAAAATTGGCG
s cb4.chrX              9171029 23 + 21540570 aggagCTCAAA--AAAGCAAACTAC------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064829 19 -  4500979 aaaagctcaaa------taaacttc------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034474 21 + 20921866 gaaaaaacgag--ggCGGGAATT--------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344020 57 +  4147112 GAAATGGCAAGATGGCAAagacttctaaaaaaaa-------cttgccgga---agaaaaaattgact
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  338116 62 +   375229 aagaagaagaa--gaaagaagcC---GGAAGGACTTGGAGCTCTGTGACAACAAAAAAGGACGGGTG
i caeJap4.Scaffold17084 I 59 I 11

a score=-1340.000000
s ce10.chrX             4069757 18 + 17718866 ACTGGATCCTCCACCACA
s caeSp111.Scaffold630  6034495  4 + 20921866 --------------AGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344077 14 +  4147112 tgTGA----TATAAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338178 11 +   375229 I
e cb4.chrX              9171052  0 + 21540570 C
e caeRem4.Crem_Contig0  1064848  0 -  4500979 C

a score=45846.000000
s ce10.chrX             4069775 147 + 17718866 TATGAAAAATAATGAA-ATAGATGA----CAGCAAC---AAACTGAAGACAAT-GGAAAGCCGAAAAGACCTTCTTATTCTTCTTCCTCCTCCTCTCAAAA-GTTTGACTA-ACCAGTG------GGGATGATATTTGATGTGAATAATTGATATGCCCTCCTT
s cb4.chrX              9171052 130 + 21540570 -AAGAGAATGAATGAAATTTCGTGATTCCGGAAGACATGAGCTAGGAAACAA------------AAGGACCT-------------------CCTCGCAAG--TTTTGAGAATACCAAAAGTGGGGATGGTGATATTTGATGTGAATTATTGATATCTTCTTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064848 137 -  4500979 --------tgaaaaaaatttgacga----gagaaac---aaatggaaaacaaT-GGAAATCCGGAAGGACCTCAATAT--------TCCTCCCTCCCAAGGTTTTTGACAA-ACCAGGA--GGAGATGATGATATTTGATGTGAATTATTGATATGTCCTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034499 137 + 20921866 -ATAAGGAAGAATGAA--TTGATGA---CAAGAAAC---ATATAGGAAACAAT-AGAAATCCAGGAGGACCTCCCTA---------TTCTTTTCCTCAA---TGTTGTCAA-ACCAAAA----ATATGATGGTATTTGATGTGAATTATTGATATGCTCTGCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344091 141 +  4147112 -ATGAGCAAGAATGAA-TTTGATGA---CAAGCAAC---ACATGAAAGACAAT-AGAAATCCAAAAGGACCTccctat------tcttcttttcctcaa---tGTTgtcaa-gagaaga----agatgatgatattCGATGTGAATTATTGATATGTCCTTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  338189 138 +   375229 gaagaaaaagaatGAA--ATGATGA-TAGCTGCAAC---AGAATAGAGACAATGGGAAAGCCGGGAGTATCTT-------------TTCCACTTCTCGGA--ATCTCCCTA-AGCAAGT----GGATGACGATATTTGATATGAATTATTGATActcctttctt
i caeJap4.Scaffold17084 I 11 I 973

a score=6806.000000
s ce10.chrX             4069922  78 + 17718866 CCGAAG----CTTTGTCGAATAAAATGTC-AATATGGGTCAAAGTTCAAGAG--GGCTTATGAAACCGCAGA---------------------------------------------------------TATTAAACCTAAA
s cb4.chrX              9171182 125 + 21540570 TTTGAG-----ATTCTCAAATAAAATGAC-GAAGC-GAGCAAAGTTCAAGTG--GGATTAGGCA--GATAAAGGGGCCGGGTCCCATGAGATATGAGTTCAAACGAACATATTGCTCTagattggaatttttggaa------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1064985  71 -  4500979 TTGAAG----TCTTCTCGAATAAAATGTC-AAGGC-GGTCAAAGTTCAAGAGGAGGATTATGCA--CATAGA---------------------------------------------------------TTTCGAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034636  64 + 20921866 CTC----------TGTCGAATAAAATGTCAAAAGT-GGACAAAGTTCAAGAG--GGATTATG--------GA---------------------------------------------------------TATTGAACCTCAA
i caeSp111.Scaffold630  C 0 I 200
s caePb3.Scfld02_0      2344232  75 +  4147112 TTCGAAGGGACAATGTCAAATAAAATGTC-AAAGT-GGTCAAAGTTCAAGAG--GGATTATGGT--TGAAGA---------------------------------------------------------TATGGTGCC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I

a score=-29812.000000
s ce10.chrX             4070000 139 + 17718866 CCTCGAG--------GGATGATGCTCGTGGATTCGTTATAATTTTATTGACAACTTTTATGGTTACCGAATTTTGtctattagtcttgcacccctacggaccaa---ttggaaattagccttgta----------------------------------------------------------------------tgcaagactaat--------------------------------------------tgattaaa---------tacgg
s cb4.chrX              9171307 256 + 21540570 tatttagTTTACACTACGTGATGTCtagaagt---ttaaaatttttttagacatATAAACACTTGatacatttatttttgaa-------attc----ggtttca---gaaaaaaacaacactgTTAAAATTACTGTGTAtcgtattttcaattttctctgaaGTACTAAAGAAACTGAATTGTTGTTTTTATTACTCAAAGAgttttcggttactgtagaaacagTTCTGTACAGTTTGAACTATAACttccaattcaaaatataCCGTACTG
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0  1065056  47 -  4500979 TCTCAAG---------------------------------------------------AGAGTTGACCCCTTT--------------------------------------------------------------------------------------------------------------------------TGGAGGAGTGTT--------------------------------------------CCATTCGA---------TACGG
i caeRem4.Crem_Contig0  C 0 I 39
s caePb3.Scfld02_0      2344307  98 +  4147112 ---------------------------------------------CCATGGGAGATAACCATATGTCCTAGTTTATGAAgaact-----attcaaaaagtttcaatcgaaaaaagtaACCTT-------------------------------------------------------------------------TGAAAAGATAAT--------------------------------------------TAACTAGAA--------TACCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I
e caeSp111.Scaffold630  6034700 200 + 20921866 I

a score=-5508.000000
s ce10.chrX             4070139 113 + 17718866 taTAT-----GTTAAAAAAGGTTTTTCCGTTTTTGGATATGAAAACACAATGTTCAACGTTTTGATTCTACAGATTAAATAGGATTAG------TATACAGAAACGTTTAAAAAAATT------AAGAAC-------
s cb4.chrX              9171587 112 + 21540570 TGATT-----GTGAAagacttcatt-----ttttgaa----------aaataatccaCGTTTTGATT----A-CCGAAACAGGATCagcttttaaattttaatttatggTGAAataatctttcaaaaaattagattt
i cb4.chrX              I 24 C 0
s caePb3.Scfld02_0      2344405  89 +  4147112 TAACTTTTACTTGAAAGATTGAATTTATCCTGTTGAA-----------------------CCTGATT----AGGCCAGAAAGTGCCAG------AGTGCTGAAACCCAGCAGAAT---------AAAAATC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I
e caeSp111.Scaffold630  6034700 200 + 20921866 I
e caeRem4.Crem_Contig0  1065103  39 -  4500979 I

a score=-7737.000000
s ce10.chrX             4070252  86 + 17718866 ACTCAGTTTACTCAT----CAGAATTTATTGAAAT------------------GAGCCAAAACATTTTTCTTGGATTCTTATACTTTAATTATGTTTTGACTATTTGT
s cb4.chrX              9171699 105 + 21540570 ggTCATTTTACCTATAAGACAAAATGCCGTAACATGTTGTATCAGATCTactaaaattgaaacattttcaaaacattctcaaAACTCAATTATATAGT---TATTTGT
i cb4.chrX              C 0 I 270
s caeRem4.Crem_Contig0  1065142  63 -  4500979 ATTTAGTTTACTT------CAAAAAggttaaacat-----------------------------tttttctagctttct---agctaaatattatatt---tat----
i caeRem4.Crem_Contig0  I 39 C 0
s caePb3.Scfld02_0      2344494  45 +  4147112 --TCTcttttattat----caaaatg---------------------------------------ttctccATCGGTCA---ATTTCAGTATC---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I
e caeSp111.Scaffold630  6034700 200 + 20921866 I

a score=-12798.000000
s ce10.chrX             4070338 262 + 17718866 AATTGGATAAGGGTTCAAACAAGTTTGATTTAGACTTTGATTGCAA--GTGTTTAAGAAAAACATTTGGAGTGTTTTTTTTTTGATATTGAGTGCTTAGAGAGTTATGAATATAACAGTTAAATGAAACCCCGCTGACGCTTCTCCATTTTTAAACATATGAATGTATATGCATTGGACCTATGTTAACCT--AATGGTAATCCAGAAAAAAAATTCAACAATTTTACGAAAAAAAGCTGTATTCGGATAACATTAGCCTACGCTC
s caeRem4.Crem_Contig0  1065205 110 -  4500979 ------------------------------agacctt-----------atattcaaaaa----------------------------------------------------------------------taccCTAATAGTTCACAAGGTCTAGTCATA--GTTACTTTT--ATTG---TGACCACAACTTCAGACATTCAACTATAAAAGACGCT-----------------AACGGTGTAATG---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2344539 154 +  4147112 AATCGGA-------------AGGGTAGGTGAGAACTCTGACTACGataatctttaaaaaa------tggtG----------------------------------------------------------TTCTCCGACACTTTACGACATTTTACGAGA--GATTCTCGTACATCG---TTATCTTTACCGCAGACGT--GAATTTAACAAACACTAAAC----CCACCACTCAAAGGTGCA------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I
e cb4.chrX              9171804 270 + 21540570 I
e caeSp111.Scaffold630  6034700 200 + 20921866 I

a score=-2298.000000
s ce10.chrX             4070600 67 + 17718866 ATGAAAATTTG-GTTGCAAAACTTTCTTCTGTGTTCTAAAGTGAAAATGCACCGAATAAAAAAAACCC
s cb4.chrX              9172074 51 + 21540570 ATGAAG---CG-GGTGCAGAAGTTCCTTC-----------ATAGAAAAACgcgaaagaagaaaaaa--
i cb4.chrX              I 270 C 0
s caeRem4.Crem_Contig0  1065315 37 -  4500979 ---AAG---CGAGGTTTAGAAGTTCCTCC-----------ATCATaaagt------------aaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2344693 39 +  4147112 ATGAAG---CGAAGTGTCGGAGTTCCCTa-----------ataaaaaacatca---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I
e caeSp111.Scaffold630  6034700 200 + 20921866 I

a score=7973.000000
s ce10.chrX             4070667 60 + 17718866 ACCGAGCAACTGACTA------TGATCTGATTTTC-------TCGGTTTGCCC--CCATTCACCTACATAATTT---------C
s cb4.chrX              9172125 82 + 21540570 acagaacaacTGACAAAGGGGAAGGACGGCATTCTGGATAAATTGGCCTTCTCTTTTACTCTCCCAC-TGGTTTTTGGGGCG-T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1065352 60 -  4500979 acaaaacaactgaCAACTG---AAGCCGGCATTCTGGATGAATTGGTTTTCTC----------------GGTTT----GGCG-A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034900 58 + 20921866 acggACCAACTGACTG------AGAGCTGTTCTCTAGATAAATTGGTTTCCCT---------------TGGTTT----GGCG-T
i caeSp111.Scaffold630  I 200 C 0
s caePb3.Scfld02_0      2344732 56 +  4147112 ---aaacaacTGACAG------GGAGCTGCTTTCTAGAtgaattggtttttct---------------tgGTTT----GGGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  338327 973 +   375229 I

a score=35161.000000
s ce10.chrX             4070727 47 + 17718866 TTTGTTAGA----------GACAATAAATCA-----CTCTCACACCTTACACTAAATGAGCT
s cb4.chrX              9172207 60 + 21540570 TTTATTAGATTTCTACGATGACAATAAATCAGCT--TTTTCGCACCTTAAAACAAATGCTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1065412 62 -  4500979 TTTATTAGATTCCTACGATGACAATaaatcattttctcttcacACCTTAAAACAAATGTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6034958 56 + 20921866 TTTATTAGATTTCTATGATGACAATAAATCACTA--CTTTCACACCTCGA----AATGTGCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344788 55 +  4147112 TTTATTAGATTTCTAGGATGACAATAAATCACTC--CTTTCACACCTCGG---CAATGTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  339300 57 +   375229 TTTATTAGATCGCAACGATGATAATAAATCA-----CGTTCACGCCTCAAACCCAATGGGTT
i caeJap4.Scaffold17084 I 973 I 681

a score=4907.000000
s ce10.chrX             4070774 177 + 17718866 AACC-----------------GCGGTTGCTCGCAATG-----AGAGGA-------AAAATGAATTGGGTTTTCAAGAAATCAATCATCAGAAAAGC---------------ACGGTTTTTGAA--------ATTTTGTTTTTGGATGGAAACGAAA----AGAGCAAAAATAAAAATGTTTAGGTT--------GGACTGAAAAAGTCTATCCTGC-----TTAATATAATTAAAAACTTTCTAAG-
s cb4.chrX              9172267 186 + 21540570 CTCG---CTATCCAAGAGG--A--------CTGGATTGActgggaaaa--a-gagaaaatgaat--ggattttcaaaaatcggtcaaccAGAAGGCCGTGTGAATTGACAGATGGTTTTCAAATGACTATCTTCCAGTTTCTGGGAagaa----------tgagcaaaaaaa--agca----------------tttct---GGAGGG------GG-----AAAAGGAAAGTACAAA-CCTTTGAAG
i cb4.chrX              C 0 I 175
s caeRem4.Crem_Contig0  1065474 205 -  4500979 CTCGTATTTCTTCCGGAGA--AATGACTCTCAGAATT--CTGGGaaa--------aaaaTAGAT--ggatttcaaagaattttgcGGACAAAAGGC--TGCGGATTCACCGATGGTTTCTAAATGACTATCGTCTCtttttttGGGGGAAAGTCAACTTGTGAGGAAGAAAAGTACTA----------------ATCTT---AGAGTGCATCTTGT-----CTAATGAAATTAGACA-TTTCTAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035014 217 + 20921866 CT--------CTCGGGAGA--GAAGGATCTCAAAATT--CCGAGAAcaagacgaaaaaatgaat--ggattTCTACGAATCGGTCAACCAGAAGCTATTCTGGATTGACTGATGATTCTTGAATGAATGgatgtttttttgtgttggA-------------GAGCTaaaaaaaGGGAATAGAAGGTACTCTTAATTACT-AAGAAGTACATCCTGTCATGACTAACGTAATTACACG-TTTctaag-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2344843 207 +  4147112 ----------TTTGAGAAAACGAAGGCTCTCGAAATT--ccgagaaga--acaaaaaaatgaat--ggatttCTACGAATTGGTCAACCAGAATGGA---TAGATTGACGGATGGTTTTCAAATGACTTACTAtctttttctccagaaaa----------tgGACCAAAAAGAGAGCA-AGAGGGTACTAAAAGTGACT---GAAGTACATCTTGT-----CTAATGCAATTAGACG-TTTCTAAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  339357 681 +   375229 I

a score=-76.000000
s ce10.chrX             4070951 56 + 17718866 AAGATACACTGAAAGTGCATACATTTTAAAACTTTGAAAAATTGAATTAGGTATGT
s caeRem4.Crem_Contig0  1065679 39 -  4500979 TAGATGAA---TAAGAGCTAAGTTG-------------AAAGAAAGTAACAACTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035231 40 + 20921866 aagttgaa---aaagagcAGACTTC-------------AAAGTGCATTCTACTTTT
i caeSp111.Scaffold630  C 0 I 18
s caePb3.Scfld02_0      2345050 40 +  4147112 AAGTTGTA---TAAGAGCAAAGCCC-------------AAAGTGCATTAGACATGT
i caePb3.Scfld02_0      C 0 I 74
e caeJap4.Scaffold17084  339357 681 +   375229 I
e cb4.chrX              9172453 175 + 21540570 I

a score=-6495.000000
s ce10.chrX             4071007 100 + 17718866 AAATTGTCTGGGCAAAAGTATGCATTTTTTAAAGTTTTTTTTGTTGAAAATTAACTCCAAGTAAGTCGAGTAAGCTCAGTTGAAAGTGTAAGGTAAA-----ATA----------
s caeRem4.Crem_Contig0  1065718  67 -  4500979 --------------AAAATACA------------TTATTCCTGTCTGGAGGTA-----AAGTGTATGGAG------------GCAAAGTATTGGGAA-----GTATTGTTAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035289  56 + 20921866 -------------agaaacaaa-------------------------aaggga-----AAGGATGTTACG--------------AATGGATCGTAAAAATGTATACTTTCGAT--
i caeSp111.Scaffold630  I 18 C 0
e caePb3.Scfld02_0      2345090  74 +  4147112 I
e caeJap4.Scaffold17084  339357 681 +   375229 I
e cb4.chrX              9172453 175 + 21540570 I

a score=-664.000000
s ce10.chrX             4071107 24 + 17718866 -----TTAATGTCACA-CTCCGGTCCTTAT
s caeRem4.Crem_Contig0  1065785 21 -  4500979 ACTATTTCGCAACTTTGCCTC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035345 15 + 20921866 -----TTAGTGgctct-tttc---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2345164 15 +  4147112 -----TTAGTGGCTCT-CTTC---------
i caePb3.Scfld02_0      I 74 C 0
e caeJap4.Scaffold17084  339357 681 +   375229 I
e cb4.chrX              9172453 175 + 21540570 I

a score=16769.000000
s ce10.chrX             4071131 79 + 17718866 AATATGTTTTGCCATTTCGTAATCAT--GGTTGCCTTGGGGAACAACAC-----CTAATTCAAACCTTTTACGAC-TATTT----------CACATT
s cb4.chrX              9172628 83 + 21540570 CATGTCGCTTTTCGTTTCTCAATCATGGGGTTGCCGCTAGAAACCAC-------------GAAGGCTCTAACGAC-CATTCAACGAGCTTTGACGTT
i cb4.chrX              I 175 C 0
s caeRem4.Crem_Contig0  1065806 76 -  4500979 --------GTTTCATTTTGCAATCAT--CGTTGCTTTGGGAGACAACCC------ACTTTCAATTCCTTAACGAC-CATTT----TGGTTTGACGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035360 71 + 20921866 --------gttttgtttcgCAATCAT--GGTTGTCCTGGGAGACATGTC-----TCTTTCAAAACCTTTAACGAC-TATTC----------AACGTT
i caeSp111.Scaffold630  C 0 I 65
s caePb3.Scfld02_0      2345179 77 +  4147112 --------GTTTCGTTTCGCAATCAT--GGTTGCCTTGGGAGACAGAGCAAGAGCTTTTCAACTGCTTTAACGACTTATAC----------AACGTT
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17084  339357 681 +   375229 I

a score=-6094.000000
s ce10.chrX             4071210 145 + 17718866 -----------------------------------------------------------------------------------------------AATATGAAAACTACACAACGTCAAAACAACAATACAACAACCACAGCAACC---AAAAGTACACTAAACATGGATGTTTTCCGACACACAATTTACATAGAATGAAATTTGAAATTGaaaattatttaaatttattt-ctgaaaattta
s cb4.chrX              9172711 186 + 21540570 -CATACAAAGGGACA---------CCGGGTCC---CGAGAAGGCAAAAGAATCA------GGCTGA---AACGGGAATTGGAATAGGACTTGACAAAAACAACATTTACACAACATCCAA-----AGTAT---AACCAAAATATTA---AA----ACGAACGACACTTATagtttttgacagattttt----------gagatttgaa-----------ttAGAatcgatttctagaaaattta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1065882 189 -  4500979 -TATATGAAAAGGCATGAGTTGGTCCGAGCACAagcgaaaaatcacaaaatacA------ACCTGA---AAGGGGAAT-----------CGGAAAACGacaacacagacacaacatctag-----aatctagaagacacaacatcacacaa----acacaaTACTGTAATAGTTTCCGACagagtttt--------------tttggaaat--------atagaaatgattt-tatgaaatt--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2345264 188 +  4147112 TTATATGAAAAGGCATACTCTTGTCTAGA------GGAAAAGTCATAATAAACAACACATACCTGAATGAAAGGGAAT-----------TGGAGGAAaacaacattcacacaatattaaa----cagcacaacaaccacaacaata---------acatcaatttttgataggttccaacaaattttt--------------tcagaattt--------tttg----gtttttcgagaaatttg
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084  339357 681 +   375229 I
e caeSp111.Scaffold630  6035431  65 + 20921866 I

a score=-659.000000
s ce10.chrX             4071355 2 + 17718866 tt
s cb4.chrX              9172897 1 + 21540570 -g
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6035496 2 + 20921866 TT
i caeSp111.Scaffold630  I 65 C 0
s caePb3.Scfld02_0      2345452 2 +  4147112 aa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  339357 681 +   375229 I
e caeRem4.Crem_Contig0  1066071 0 -  4500979 C

a score=161171.000000
s ce10.chrX             4071357 259 + 17718866 aaaaaCAAAAACCAACCCTTTAACCATATTGCCTTCTGCATCTGCCAAGTTCAAAACATAGACGCTCATCTGCCGCCTCCAGAGTCACAAAGTAG----TCAAAATTTCGAATTTTTCTGAATGTTT--CAAGGTTT-------------TTGTAGTT-------CAAAC--------------AAGACGTCGGAGTAGGAG------AAATGACACGTGAG--TAAGTATGGCAAAA-TATATGGTAAAAA-A---ATGATATTCGTGAGAGCCGAATATCGG-----CTTCACCTACACCCTCACTAGGAT--TGGG
s cb4.chrX              9172898 264 + 21540570 aaaaaagtaaacCAACCCTTTAACCATGTTGCCTTCTGCATCTGCCAAGTTCAGAACATAGACGCTCATCTGCCGCCTTGAGAGTCACAAAATCGAAtatcaaaattccgaa-ttttctgaatgtttttcaagttt-----------------ctctt-------TGAATT------------CGAGAAAAGTAAGAAGAGG--AGCGAAGGGACACGTGAGTATAGATATGACGACGATATATAGGGGTCA-ATATGGGATATTCGTGGGAAC----TATTG------GTATAC-CGCACCCTCACG----CCGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1066071 262 -  4500979 --aaatACAAACTGACCCTTTAACCATGTTGCCCTCTGCATCTGCCAAGTTCAGAACATAGACGCTCATCTGCCGCCTTGAGAGTCACAAAGTAGGATAtcaaaattccgaa-ttttctgaattttttccaagttC--------------GAGTGGTT-------CAAATA------------CGagaaaacgaagga----------aaatGACACGTGAG--TGGGTATGACGGTG-TACATGGTAGGAA-A---GTGATATTCGTGTGAAC----TATCGGGGGCCGGATACAAACACCCTCGCTTAGCTTGGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035498 266 + 20921866 GAAAGATGAAACTAACCCTTTAACCATGTTGCCCTCTGCATCTGCCAAGTTCAGAACATAGACGCTCATCTGCCGCCTTGAGAGTCACAAAgtagaatataaaaattccgaa-ttttctgaagttttgtCAAGGTT-----------------CGGTT-GGTTCgcaaatg------------aaagaagaagaaaga----------gaatgacACGTGAG--TAGGTATGACGGTG-TATATGGTTTGAG-A---ATGATACTCGTGAGAACGATATATGGGGG---CGATACCAACACCCTCACTTAGAT--GAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2345454 262 +  4147112 acaaaaaaaaactaacccttTAACCATGTTGCCCTCTGCATCTGCCAAGTTCAGAACATAGACGCTCATCTGCCGCCTTGAGAGTCACAAACAGGAATATAAAAACtccgaa-ttttctgaatttttgtcaaGGTT-----------------CGGTTCGGTT--CAAAT--------------AAGAAAACGCAAGA----------AAGTGACACGTGAG--CAGGTATGACGATG-TATATGGTTTGGGAA---ACGATATTCGTGAGAAT--TCTATGGGGG---CGATACCAACACCCTCACTTAGAT--CGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  340038 292 +   375229 aaaaaaagaaactaacCCTTTAACCATGTTGCCCTCTGCATCTGCAAGATTCAGAACATAGACGCTCATCGGTCGCCTTGTAACTCGCGAA---GAAAGtcaaatttccgaa-ttttctgAACACAA--CAAAATTTTTCATCGGAAAAAACGCAGTA-------CATACGTCAAAAATGTGTAGAAAGAAAGGAGGAGCCGGAAGAATAATGACACGTGAG--TGGGTATGACAGTG-TATATTGTCGGAA-A---GTGATATTCGTGAGAACGATACGTAGG-----CGATACCGACACCCTCGCTCTGAC--GGAG
i caeJap4.Scaffold17084 I 681 I 15

a score=-3.000000
s ce10.chrX             4071616 15 + 17718866 AATGCCTTCCGGTGG
s cb4.chrX              9173162  7 + 21540570 CATA------G--GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1066333 13 -  4500979 CATATCGGTGG--GA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6035764 15 + 20921866 CATGTTTTCCGGTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2345716 13 +  4147112 CATGTTTTCCG--GG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  340330 15 +   375229 I

a score=13761.000000
s ce10.chrX             4071631 19 + 17718866 A-------CAGGTAGGTCAAAAATCA
s cb4.chrX              9173169 21 + 21540570 GCT-----CAGGTAggtcgaaaatta
i cb4.chrX              C 0 I 924
s caeRem4.Crem_Contig0  1066346 26 -  4500979 GGTATGGGCAGGTAGGTCAAAAATCG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6035779 19 + 20921866 G-------TAGGTAGGTCAAAAATCG
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2345729 19 +  4147112 G-------CAGGTAGGTCAAGAAtcg
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  340345 19 +   375229 -------ACAACTAGGTCAACAATCA
i caeJap4.Scaffold17084 I 15 I 16

a score=-1701.000000
s ce10.chrX             4071650 22 + 17718866 TGTGAGATGAAAATTGAGAGAA
s caeRem4.Crem_Contig0  1066374 22 -  4500979 TGAGAGATGGAAATCTTTAGAC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6035800  5 + 20921866 TGAAA-----------------
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2345750 18 +  4147112 tgaaaaaagaaag----gagac
i caePb3.Scfld02_0      I 2 I 114
s caeJap4.Scaffold17084  340380 22 +   375229 TGTGGAATAATCAGAgagagaa
i caeJap4.Scaffold17084 I 16 C 0
e cb4.chrX              9173190 924 + 21540570 I

a score=-11938.000000
s ce10.chrX             4071672 87 + 17718866 AGTATTCAACATGTAATCGTAAATGTATTATATTTTACGAGGtaaaaatata-------------------tatatatatatGTTTAGTAGTGCTGGGGAGTTTCT
s caeRem4.Crem_Contig0  1066396 23 -  4500979 -------------------------------------------AGAAA----------------------------------GGAAAAGAAT------AGGAGTTT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6035805 40 + 20921866 ------------------GTGAATTAATTA------------TAGAAA------------------------------ATATGGGATGGAAT------CAGTTTTT
i caeSp111.Scaffold630  C 0 I 22
s caeJap4.Scaffold17084  340402 87 +   375229 -aaatttaaaggtTGATGGTGCAAGATTTC------------TAATAAAACACTTTGccctttttttggtttattaATATTAGgaaattaaa------acatttct
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2345768 114 +  4147112 I
e cb4.chrX              9173190 924 + 21540570 I

a score=-39175.000000
s ce10.chrX             4071759 187 + 17718866 ACA------AGAACTTAAT--------TCATGAAGCGAAAAAGTTTGCGCCACTTTTTCAAAAACAAAATAATCAGAA--GAACTTTGAAATTTCAAACAA--TAAGCAAAACATTATTCGCAAAAATTGAATGCGTCTCTATTGT----------GA----AGCAAAACATTAAAACTATTCAAAAAAATTTCATTTTTT----ATTTAGAGTCAAAAAGTT
s caeRem4.Crem_Contig0  1066421 168 -  4500979 AGA------AATATTtatg--------tctggaaaaaagagaggtt---caattttttgcaagttGATTTACT--------AGGAACTATACTAAAAAcgaattttgtaaaat----ttgatCGAAAT-------ACTAAAG--AT----------GAAACCGTAAAAACAGT-----TTCTGAAAGAGGTTTTACtatggtttttgaaatttccaa--aagt
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold630  6035867 140 + 20921866 aag------aaaattcaCG---AT---ATTTGAAATACAAT-------------------AACtctttgtttt--------attttttctaactagaaaaa------taacac-------GTAGAAATTGAACCGGATTAAA--AT----------GA----gttcaaataat-----tatttcag------ttGTTATAG----AAAAAGAACCAATCAGAT
i caeSp111.Scaffold630  I 22 C 0
s caePb3.Scfld02_0      2345882 166 +  4147112 aagggagaaaaaattcaag--------ttctgaaaagccctttttt---caggtttttggaAATCTCGGTTATCGG----GAATCTCTTTATTCAAAACGA--TTTGTAAAGT-------ATATAAACTGCGCTCTCTTACACTAT----------GA----CTCAAAACATT-----TGCTGca--------cacaatga----aaaaaaaatcaa--agtt
i caePb3.Scfld02_0      I 114 I 115
s caeJap4.Scaffold17084  340489 170 +   375229 -----agaaaaaattcgaacaaatttaattgaaaaagcTAAAGT-----GAGcctgttgaaaaaaaagatttttcaaaatcattgTTTGTATGCCAGCCTA--T---TAGAGG----CTGCCAGGAA--------ATCAAAGGTATCGGGCGATCAGA----GTAAATACGG------TGTTTCA--------CATTTTCT----AGATAGAG--AA--TGTT
i caeJap4.Scaffold17084 C 0 I 2
e cb4.chrX              9173190 924 + 21540570 I

a score=-18631.000000
s ce10.chrX             4071946 143 + 17718866 GAGCATCATCTGCCCCACAGTTGAGCCC---------TAAACTACCGTCGCATGTTTGGACCCCTAATATGTGTAACATAAAATTTGAATTGAACGTAAACTTTTGATGAGTGATTTTTTTGAATAAAAATGAGAGGAAAATATATTATGAA----
s caeRem4.Crem_Contig0  1066590  33 -  4500979 -------------------------------------aaaACT--CG-------------------------ATATTTTATCA-------------------------------------------------------AACTATATTATATT----
i caeRem4.Crem_Contig0  I 1 I 5
s caeSp111.Scaffold630  6036007  99 + 20921866 --GTAGCAtctttttcttagaaaataTTCATCTCAGACAAACTTCCG-------------------------GTAATTTAAAA---GAATTccatgaaaat-----------------------aaaaacctaGAAATAGATATATTAGTTC----
i caeSp111.Scaffold630  C 0 I 27
s caeJap4.Scaffold17084  340661  96 +   375229 ---GAGCAACTCTTCCTA-------------------CTAGCT-CCATGACATTTTGGTTC-----------GCACTTATAGA---AAATCATAAGCTATT-----------------------CAAAGTTTAGGTGGAGAAATGGAGCCATGGAA
i caeJap4.Scaffold17084 I 2 C 0
e caePb3.Scfld02_0      2346048 115 +  4147112 I
e cb4.chrX              9173190 924 + 21540570 I

a score=-36743.000000
s ce10.chrX             4072089 152 + 17718866 CAACTT----TTGTATACCGGCAA---------------CTAAATAAATTAGATTTTTCCCATATCTAGAATAAAGTGCCTAAACATTGAATTGTAAC---CATAACCTCCCAGGAAATAATTGAAACGCAAGTT--------TTCAGTTTCCAGATATAAAAATGTTATATAAAT----ATAAGA-----
s caeRem4.Crem_Contig0  1066628 100 -  4500979 TAACTA----TTATTAAATAGAAA--------------------CCAA-CAG---------------------------------ACTGCACTGTTct------gaatatttggaaaatcacagaaaccctaa--------------------aactcaaaaaatgtt-tttgagg-tttttcaga-----
i caeRem4.Crem_Contig0  I 5 I 3
s caeSp111.Scaffold630  6036133 163 + 20921866 TAACTTGTGATTTGGAGACAGAAAAAAGCTAATTGGTGAATAACTAGA-AAGAAATTacgagaataaaaattatattcttttatttctttgcTTTTATCAACGAAAATCTATCAAAAGTTCCTATGTCgcagaa-------------------aaatcg-aaaacgtGAATTGAGG--TTTTCAGA-----
i caeSp111.Scaffold630  I 27 I 3
s caePb3.Scfld02_0      2346163 146 +  4147112 CAGCTT----TTTCATAACAGTAA---------TCGAGAAAAAGTATA-CAG--TTTATCAAAATTTATAGCTTATTTTGGGTTAACCTCGTTTTCTTGCAAAAGAACACACGAGAAA-----GTGACACTAGT-------------------AAATCGAAAAACGTGGTTTGaggatttttcaga-----
i caePb3.Scfld02_0      I 115 I 3
s caeJap4.Scaffold17084  340757 108 +   375229 ------------------------------------------------------------------CAAACCATGGCCAGAGCCAACCCAACtcaaat------gaa---atgaaaaacaa--gaaatgttGATTGTGATCAATCTGAGTTTTAGATTC--AAATTTGAATCCAAG----TTCATATGGGA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9173190 924 + 21540570 I

a score=124890.000000
s ce10.chrX             4072241 291 + 17718866 ATATGAGTAGATCTAATTA-TTTACTTCTTCATCTTTTT--CTTCAGAAA---TCGAAGAGTTTCTTTTCCACTCTGCATC--------------------------TCTTTCTA-TTTCCATTTCACTTCCAATTTTGCTTCACCTCTTCAAATAGG-CTTGAATAGCAAATAAATGATACA-------CT-CGTCT-------------------------AGTAGAAACCTTTGTGGCATTTACAAAGTGTAAAG--AATTAAGGAAAAAGGC-------------------GAGAGCAAAA-----AGTATCGGAACGG--GTAAAAAGAAGAGTATGAAGAGAT-----GCAACACTGCTGACCACAACAGAGTTTT----------CTAATGATG
s cb4.chrX              9174114 337 + 21540570 ATAAGAGTAGATTCAATTA-TTtacttcttcatcttctt-ccttcAGAACTCGtc---ggttttctttttcattctatCTCTCTTCTAGTTTTTACATCTATCTAAGTTCCACAAGTTTCTATTTTACTTCCAATTT-GCTCCAC-------ATAGG--TTTGAATAGCAAATAAATGATACA-------CTGCGTCT-----------------------AGAGAGAaagttttaca---aatttcaaagtaccaag--aaacagaaaatgaggATGGAGCAAAAAAGTAAA--AGATGAAAACAAGGGAGTCTGGGAACGG----GGTAAG--------GGAGGGATAATATGAAGGGACACTGACCACAAAAGATTCGTTGTCGTTTTCCTAATAATG
i cb4.chrX              I 924 C 0
s caeRem4.Crem_Contig0  1066731 334 -  4500979 ataagAGTAGATCTAATTATTTTACttattcatctttttcccTTCAGAAC---Tc---ggttttcttcttctctctatctctctcc--atctctcaatccat-----tttcacaa-tttctatTTTACTCCCAATTTCCCTTCACCTCTTCAACTAG--CTTGAATAGCAAATAAATGATACA-------CT-CGTCT-------------------------AGTAAAACCTTTTGG---ATTTACAAAGTGTCAAG--AAACtgcaatgaagaa------aaagaaggaga--tgaagAAAAC-AGATAGTGGGGGAACGG----CGTAAGAAGAATATGAAGAGGTAACGAGCTGTGACATTGACCACAACAGATTTTTCGTCGTTTACCTGATGATG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  6036299 312 + 20921866 ATAAGAGTAGATCTAATTA-TTtacttcttcatcttctt-ccttcagaac---tc---agttttctttttctttctatctc--------------------------tcttacta-tttccattttacttccaattttGCCTCACCTCTTCAACTAGGCCTTGAATAGCAAATAAATGATACA-------TT-CATCT-------------------------AGTAAAACCTTTTGG---ATTCACAATGGGTCAAG--AAACGAgcaaaaatga--tagaaaagtAGGAGAGCTGGGGGGAAA---------GTGGAACGG-----GAAGAAAGAATATGAGAAGACAACGAGATCTGACATTGACCACAACAGATTTTTCGCCGTTTTCCTAATGATG
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2346312 322 +  4147112 ataAGAGTAGATCTAATTA-Tttacttcttcatcttctt-tcttcagaac---tc---ggttttcttttcctctctatctc--------------------------tctcacta-tttttattttacttcCAATTTTGCTTCACCTCTTCAACTAG--CTTGAATAGCAAATAAATGATACA-------CT-CGTCT-------------------------AGTAAAACCTTTTGG---ATTTACAAAGTGTCaaa--aaccggagaaaaaaga--aaatatacgaggaaa--taaaaaaaaacattccggGATGGAACGGAGGGTAAAAGAAAAGTATGAGGAGACAACGAGCTGTGACACTGACCACAACAGATTTTTCGCCGTTTTCCTAATGATG
i caePb3.Scfld02_0      I 3 I 942
s caeJap4.Scaffold17084  340865 255 +   375229 -----gcaaaatttaatta-tttacttcttcgtttt----tctttgaaaa---gc---AG-----------------------------------------------TCTCTTAA-ATTC-ATTCCTCTTCAAA------------------ACTCA--CTTGAATAGCAAATAAATGATACATGGTCGCCT-CGTCCAACAGAAAGAAATGAAatagaataaaataaaaccttTTGC---TTTTACAAATTGACaaggaagacgtagaaaaagga-----------agaaga--agaagagcat-------------aaccg--gaagaaaagaaaataaaagaagtTG--------------TGATCA---------------AGTTTTCCTGATGATC
i caeJap4.Scaffold17084 C 0 C 0

a score=211436.000000
s ce10.chrX             4072532 282 + 17718866 CTATCGAAAAATCTATCACACACTGATTCGT-TGAATACTTTTTACAA------CATATTGCGAGG------ATTTTGAAAAAC-GTGAAAACGATTGTAGAACATCAGAAGAAATCAAAACTTGATGATATGCCTGCCGGATTCTTGTCACATTTTACGAGCTCTTTCAAACAATTGGATGGATTATTGACAGCTGAAGCA--TCTGCCTGATCTACAATTGATCATTTTGACAGGACGAAG-----------TGAGTGAAAACCTCT-----AACCACACCGGAGGGTGGATATTTTTA--------GTGGGGGCGGC----------GA
s cb4.chrX              9174451 306 + 21540570 TAATCTATCAATCTATCACCGAGTGATACCTCCTGCGACGACAAAAGAA-AGTGTACATTTTGTGA--------GTGAAACGACAGAGGAAACGATTGTAGAACATCacaagaaatcaaaacttgATGATATGCCTGCTTGATTCTTGTCACTTTTTACGAGCTCTTTCAAACAATTGGATGGCTTATTGACAGCTGAAGCCTGTGCCTATGATCTACAATTGATCATTTTGACAGGATGGGGTGCGGGAAGGATGAGTGAAAA-CTTTCTCAAAACCACAC--------GGATATTTTTA--------GTGGGGGCGGCGGCGGCGGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1067065 284 -  4500979 CTATCTATCAATCTATCAC--ACTAATACTTGGAGATACTCCACACGAAGAGAGGAGATTGtttgaggaaaaatgtgaaaagac-GAGGAAACGATTGTAGAACatcagaagaaatcaaaacttGATGATATGCCTGCCCGATTCTTGTCACTTTTTACGAGCTCTTTCAAACAATTGGATGGCTTATTGACAGCTGAAGTC--TGCTTCTGATCTACAATTGATCATTTTGACAGGATGGAG-----------TGAGTGAAAA-CTCT-----AACCACAC--------GGATATTTTTA--------GTGGGGGCGGC----------AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6036611 279 + 20921866 CTATCTATCAATCTATCAC--ACTGATACTCGTCGGTTTG-CTGACGA--TGCGTATATTTTGAGAGCCGAGTTGTG-AAAGAC-GAGCAAACGATTGTAGAAcatcaaaagaaatcaaaacttgATGATATGCCTGCCCGATTCTTGTCACTTTTTACGAGCTCTTTCAAACAATTGGATGGCTTATTGACAGCTGAAGTC--TG--CCTGATCTACAATTGATCATTTTGACAGGAAGAAG-----------TGAGTGAAAA-CTCT-----AACCACAC-------GGGATATTTTTA--------GTGGGGGCGGC----------AA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2347576 276 +  4147112 CTATCTATCAATCTATCAC--ACTGATACTCGTCGATTC--TTGACAA--AGCGTATATTTTGAGGGT----TTGTGAAAAGAC-GAGAAAACGATTGTAGAACatcaaaagaaatcaaaacttgaTGATATGCCTGCCCGATTCTTGTCACTTTTTACGAGCTCTTTCAAACAATTGGATGGATTATTGACAGCTGAAGTC--AGTCCCTGATCTACAATTGATCATTTTGACAGGATGAAG-----------TGAGTGAAAA-CTCT-----AACCACAC--------GGATATTTTTA--------GTGGGGGCGGC----------AA
i caePb3.Scfld02_0      I 942 C 0
s caeJap4.Scaffold17084  341120 276 +   375229 CTACATATACATATGTCAA--TTCATCACTGGGAGGTGC--TAGAGCA--GGCGCAT-CAACGAGAAAAGGTATTTGTCGGATC---GGAAATGATTGTAGAACATCAGCAGAAATCAAAACTTGATGATATGCCCGCCCGATGCTTGTCACTTTTTACGAGCTCTTTCAAACAATTTGATAGCCTATTGACAGCTGAAGGC--TG--CCTGATATACAATTGATCATTTTGA--------AG-----------TGAGTGGCAACTTCT-----AACCACAC--------gagtatttttatttttagtggGGAGGCGGC----------GA
i caeJap4.Scaffold17084 C 0 I 407

a score=48603.000000
s ce10.chrX             4072814 105 + 17718866 AGTA-------GATGTCTTAAGAGGTTGGAAAA-GGATGGAACCTCATTACA----TGCTC--AAGT-TTTTG------TCAGCAAA--------ATTGAG----GAAATTCTGAAAACTACTTCTAGTCTCT---TTTTT
s cb4.chrX              9174757 127 + 21540570 AATG-AGAGACGATGTCTTAAGAGGTTGGAAAAGGGATGGAACCTCATTTCAAGGCTGCCCCACAAGATTTTGTGGAgatttgagag--------agagagagatggaattctggaaactacttctactttttttc-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1067349 113 -  4500979 AATG-AGAGACGATGTCTTAAGAGGTTGGAAAA-TGATGGAACCTCATTTCA----TGcttcccaat-ttttgt-----ttgggaag--------agagaaagagaaaattctggaaactaCTTTTACTCTTT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6036890 122 + 20921866 AATGAAGAGACAATGTCTTAAGA-GTTGGAAAA-GGATGGAACCTCATTTCA----AGCTC--Cagt-ttttg------ttggaaaaacggagagagagagaag-gaaattctgaaaactactTTTACTCTTT---CATTT
i caeSp111.Scaffold630  C 0 I 225
s caePb3.Scfld02_0      2347852 114 +  4147112 AATGAAGAGACGATGTCTTAAGA-GTTGGAAAA-GGATGGAACCTCATTTCA----TGCTT--cagt-ttttg------ttagaaaa--------agagaggga-aaagttctggaaactACTTTTACTCTTT---CATTT
i caePb3.Scfld02_0      C 0 I 430
e caeJap4.Scaffold17084  341396 407 +   375229 I

a score=-763.000000
s ce10.chrX             4072919 66 + 17718866 TACGCCGCGGAAATAAAAATAGGTAGACCATCAAGTTTTTAGAAATAGGAAAGTGAACA--ATAAAAC---
s cb4.chrX              9174884 68 + 21540570 ttcttaaaaGAAATAAGAGGA---CGAGCATCTGTATATCCAGACTTCAAAAGGAAAAGGAACAGAACAAC
i cb4.chrX              C 0 I 1711
s caeRem4.Crem_Contig0  1067462 58 -  4500979 TAGTAGAAGGAAGTAAgcgaa-----aaaatctgaatacc---AACTGGAAAGGAAGAG--ACAAAAC---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I

a score=0.000000
s ce10.chrX             4072985 61 + 17718866 GATATTCTTAGTAACTTTGGTTATTTGTTTTAAAAGTCGAAATAAATC-TGAAAATGGTAAG
s caeRem4.Crem_Contig0  1067520 40 -  4500979 --------------------TCGTCCCTTTT--ATGTTGGAAGgattcttgaaaattggaag
i caeRem4.Crem_Contig0  C 0 I 43
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e cb4.chrX              9174952 1711 + 21540570 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I

a score=0.000000
s ce10.chrX             4073046 69 + 17718866 GTCAGCAGAAAATTAATTAACAGATAAAATAGAAGTTTGTTAATAATATTGAATACTCtaaaattttaa
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e cb4.chrX              9174952 1711 + 21540570 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I
e caeRem4.Crem_Contig0  1067560 43 -  4500979 I

a score=-4000.000000
s ce10.chrX             4073115 539 + 17718866  
s caeRem4.Crem_Contig0  1067603 292 -  4500979  
i caeRem4.Crem_Contig0  I 43 C 0
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e cb4.chrX              9174952 1711 + 21540570 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I

a score=573.000000
s ce10.chrX             4073654 2 + 17718866 CA
s cb4.chrX              9176663 2 + 21540570 CA
i cb4.chrX              I 1711 C 0
s caeRem4.Crem_Contig0  1067895 2 -  4500979 CA
i caeRem4.Crem_Contig0  C 0 I 52
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I

a score=904.000000
s ce10.chrX             4073656 68 + 17718866 TTTGAAAAGTTCTAATGGAACGATTTCTTGCAGTTTACACAA-TTGTCTAATATTTGCCAAAAATTGTA
s cb4.chrX              9176665 65 + 21540570 Tgtaaaaattcttcaaaaaac-atttctagaaatttgcaaaacttttAGAGTACT---AAAAGATCGTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e caeSp111.Scaffold630  6037012 225 + 20921866 I
e caeRem4.Crem_Contig0  1067897 52 -  4500979 I

a score=535.000000
s ce10.chrX             4073724 7 + 17718866 TTATGAG
s cb4.chrX              9176730 7 + 21540570 TTCTCAC
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold630  6037237 7 + 20921866 TTATGAT
i caeSp111.Scaffold630  I 225 C 0
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I
e caeRem4.Crem_Contig0  1067897 52 -  4500979 I

a score=-1449.000000
s ce10.chrX             4073731 32 + 17718866 TCACTGGTTTCTTAGGAAAGTTAAAGTTTTCT-
s cb4.chrX              9176741 32 + 21540570 ACATTTCTTAATTCGTAGAACTGAACTTACCT-
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1067949 24 -  4500979 TCACTGCTTCCT-------ACTGAACTTGTC--
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold630  6037244 30 + 20921866 TCACTTTTTCGC--Ctaaaactcacattttc-G
i caeSp111.Scaffold630  C 0 I 4
e caePb3.Scfld02_0      2347966 430 +  4147112 I
e caeJap4.Scaffold17084  341396 407 +   375229 I

a score=16394.000000
s ce10.chrX             4073763 44 + 17718866 AACTCTTCATAACGACACGAAACAACCTCTCCAC---CAAAATC-TTC
s cb4.chrX              9176773 38 + 21540570 ---------AAACAACAGAAAAC-AGACTActactcaaaaaatcatcC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1067973 33 -  4500979 ----------AACAACAGAAAAC-ACTCCTCCAC---AAAAATC-TTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6037278 43 + 20921866 AACTTGTCAACACAACAGAAAAC-ACTCCTCCAC---AAAAATC-TTC
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2348396 43 +  4147112 AACTTGTCAACACAACAGAAAAC-ACTCCTCCAC---AAAAATC-TTC
i caePb3.Scfld02_0      I 430 C 0
e caeJap4.Scaffold17084  341396 407 +   375229 I

a score=449914.000000
s ce10.chrX             4073807 927 + 17718866  
s cb4.chrX              9176811 997 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1068006 913 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6037321 906 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2348439 904 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  341803 826 +   375229  
i caeJap4.Scaffold17084 I 407 I 1262

a score=-11311.000000
s ce10.chrX             4074734  66 + 17718866 ATT-TTTCTGAAAAATAT--------------AAT-----ATATGGAGAGAAAATTT-----------GGAAGTAACTAAAAATGCTTTGCAATTGC----------------------------------------------
s cb4.chrX              9177808  77 + 21540570 atcaattatgatgaatagagaaaaaatagaaaaagaagaaatgcggaatgaaattttttggggaaaaaggaaaCAGC------------------------------------------------------------------
i cb4.chrX              C 0 I 171
s caeRem4.Crem_Contig0  1068919  64 -  4500979 ATCAATGATGATGAATGTGagtgaaacgaaaaaag-----acccggaaaaaaaagttttgcgg--------AGCAAC------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  6038227 122 + 20921866 atcaatgatgatgaatgt--gtaaaaagaaaaaag-----acaccgcacaaaaatt------------ggaaactcC--ATCTCTTTTTACTATTTCGTGTTGCAATAACGTCAAGAACTAGAAATACTTGACTAGGAAGTCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2349343  83 +  4147112 atCAATAATGATGAATGT---------GGAAAAAG-----ACAccg---aaatatt------------gaaaatagc--atctctttttactttttc---------------------ctg--------TTGCAAAAATGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I

a score=477.000000
s ce10.chrX             4074800 5 + 17718866 TCTAC
s caeRem4.Crem_Contig0  1068986 5 -  4500979 TCTTC
i caeRem4.Crem_Contig0  I 3 I 116
s caeSp111.Scaffold630  6038349 5 + 20921866 CCTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2349426 5 +  4147112 TATGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e cb4.chrX              9177885 171 + 21540570 I

a score=560.000000
s ce10.chrX             4074805 103 + 17718866 TG--------------CTAAATTATAATCATCCGG--------------TGCCATAAATCTCTCTGTTTCCGTACCCTTTGAATATAAGAATGTGTAATTAATATTTT-ATCTTTGAAAAA-----GTAGGAGTTTT
s caeSp111.Scaffold630  6038354  75 + 20921866 CA--------------ACAAATGATAGACATCCGG--------------AGGCACAAA----------------------------AAA------CGGacaaaaatactttttctgaataattatCATATGATTTCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2349431 108 +  4147112 CAAAAGTTGCGACAATACAAATGATAGACATCCGGATCCTTGCGaagaaagacagaaa----------------------------aaaaatgagtagaCGAAAATAC-CTATATGAATAATTatcatatgattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e cb4.chrX              9177885 171 + 21540570 I
e caeRem4.Crem_Contig0  1068991 116 -  4500979 I

a score=8712.000000
s ce10.chrX             4074908 396 + 17718866  
s cb4.chrX              9178056 311 + 21540570  
i cb4.chrX              I 171 I 6
s caeRem4.Crem_Contig0  1069107 395 -  4500979  
i caeRem4.Crem_Contig0  I 116 I 305
s caeSp111.Scaffold630  6038429 314 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2349539 341 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I

a score=-12054.000000
s ce10.chrX             4075304 100 + 17718866 ATAGAATGAATGAAAATTGTGTTTCAATTACGTCATAAAATTTGAAAATTTTGGAA-----------GTTACACGCATATTTAGATTTTTTTAATGTTCAGTCAATAGTTT-----------------------------------
s cb4.chrX              9178373  90 + 21540570 -----------------------------AtatgacagaaaaaaaagagttttgaaaTAACCCTTGGTCTATCGgtaaaagtttaatttttgaaatttttttgaacgagTAAGTGAAAA---------------------------
i cb4.chrX              I 6 I 29
s caeSp111.Scaffold630  6038743 100 + 20921866 -------------------------------ATGATATGACatgaaacttttcgaaacgaaGATCATTTCA------------TAATCTTTGGAAGCGCATCTGACaagt---tcaaaatatttttctgaatctccGAGATACTTT
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_0      2349880  25 +  4147112 -------------------------------ATGATATGACacgaaacttttcgaa------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e caeRem4.Crem_Contig0  1069502 305 -  4500979 I

a score=0.000000
s ce10.chrX             4075404 13 + 17718866 GGCAAATTACCAA
e caePb3.Scfld02_0      2349905  0 +  4147112 C
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e cb4.chrX              9178463 29 + 21540570 I
e caeSp111.Scaffold630  6038843  8 + 20921866 I
e caeRem4.Crem_Contig0  1069502 305 -  4500979 I

a score=-12232.000000
s ce10.chrX             4075417 84 + 17718866 AAATGTTGTAACAtattagctttcaa-------------------ggaaatcaagagc---aattttgcaaaattagagtttgccaataaatgaaaatttttcaaa
s cb4.chrX              9178492 67 + 21540570 -----------ATACTTTGCATTATATCATTCAAATACCGTAATATGATTTATTGAAGTCTGATGCAC----------------------------AGATTTAACA
i cb4.chrX              I 29 C 0
s caeSp111.Scaffold630  6038851 89 + 20921866 AAATGtc-taaaaaatcagttttcga----------aCTGAAAT-TGATTCTAGAGAC---AATattcaaagttcaaaaact--taccacatgaaaatttccaaaa
i caeSp111.Scaffold630  I 8 I 47
s caePb3.Scfld02_0      2349905 45 +  4147112 ---------acatagTCTAACTTC---------------------TGATCTTTGGaag---aactttt----------------------------atttttatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e caeRem4.Crem_Contig0  1069502 305 -  4500979 I

a score=-28362.000000
s ce10.chrX             4075501 498 + 17718866  
s cb4.chrX              9178559 578 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2349950 385 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e caeSp111.Scaffold630  6038940  47 + 20921866 I
e caeRem4.Crem_Contig0  1069502 305 -  4500979 I

a score=7985.000000
s ce10.chrX             4075999 14 + 17718866 AAACCAAAAATCAT
s cb4.chrX              9179137 14 + 21540570 AATCCAGAAATCAT
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0  1069807 14 -  4500979 AATCCAGAAATCAT
i caeRem4.Crem_Contig0  I 305 C 0
s caeSp111.Scaffold630  6038987 14 + 20921866 aatccaaaaatcat
i caeSp111.Scaffold630  I 47 C 0
s caePb3.Scfld02_0      2350335 11 +  4147112 ---cgaaaaatccc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I

a score=871.000000
s ce10.chrX             4076013 14 + 17718866 AGTTGGAGAGACCC
s caeRem4.Crem_Contig0  1069821  8 -  4500979 -----AAtaaacc-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039001  9 + 20921866 -----aGTAGACCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2350346  9 +  4147112 -----aGTGGAccc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I
e cb4.chrX              9179151 16 + 21540570 I

a score=-2876.000000
s ce10.chrX             4076027 10 + 17718866 CAGAAG--TCAA
s cb4.chrX              9179167 10 + 21540570 CATACA--CACA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0  1069829  7 -  4500979 ---aaa--caaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039010  8 + 20921866 ----Cagcgaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2350355  6 +  4147112 ----ca--agaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  342629 1262 +   375229 I

a score=98191.000000
s ce10.chrX             4076037 244 + 17718866 --AAAATAAGGGGTGGTGTCATAAAGTGACAAGCGGGCATC---GCCACGGATCAATCAGAAAGAGGATGTAACCAGTCGTCAGTATTATAGGGACAA-GGCAGCAGTTGG---------TC-GTGTCGGA--CAGACAAAAAGCC--------AGGAGCACCATC------G-TGTC-AATCGGCAAT----------GTGTTCCAAGAGTCGTTGGAAACAAC--CGAGAGGCGCC-----AGCC--GATATCCATGTGATAGTGAA----------AAGGTTTGT--TATTGGGGTTCAAACAGAT
s cb4.chrX              9179177 259 + 21540570 --AAAATA--TGGTGGTGTCATAAAGTGACAAGC-GACATATCCTCAACGGATCAATCAGAAAGAGGATGTAACCAGTCGTCAAGATTATAGAGAAAATGGCAACAGGTGgtccttcttctc--tttcgGA--ATGAAATCAAAGAg-------tctctctccctc----tca-tGTCAAATTGACAAT----------GTGTTCCT--AGTTGTT------GAGGTCCACCAGTCTTTTTTGTGTTGGTGTTTTCATGTGATAATGAA---------ATAAGTTTGT--TATTGAGGTCCTGACACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1069836 261 -  4500979 --aaaata--gggTGGTGTCATAAAGTGACAAGC-AACATG---TCAATGGATCAATCAGAAGGAGGATGTAACCAGTCGTCAGCATTATTGGGATAA-GGCAACAGGTGG---------TC--TTTTGGA--ATGAatggaaagaggaaaaaagctCATTCCTTC--------TGTC-AATCGGCAAT----------GTGTTCCTAGAGTTGTTGGAAACGAGCGCCGCCGGACCT-----GGCCACAATATCCATGTGATAACGGAAAGTGACGGAAACGTTTGT--TATTGGGGTTCCAACACAc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039018 246 + 20921866 --aaaata--gggTGGTGTCATAAAGTGACAAGC-GACATT---GTCACGGATCAATCAGAAAGAGGATGTAACCAGTCGTTAGGATTATAGGGATAA-GGCAACAGGTGG---------TC---Gtcaga--aggagaaaag-----------agcCATTCTCTCC-ACCCG-TGTC-ACTGGAAAAT----------GTGTTCCAAGAGTCGTTGGAAGCGAG--CCATCGAGCCC-----AGCCACAATATCCATGTGATAGTGGC-------GGAAATGTTTGT--TATTGGGgttcaaacagaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2350361 207 +  4147112 --aaaata--aggtgGTGTCATAAAGTGACAAGC-GACATC---GCCACGGATCAATCAGAAAGAGGATGTAACCAGTCGTCCGCATTATAGGGAT-A-GGCAACAGGTGG---------TC---GTCGGA--ATGGAAGAGGGGA--------AGTCATTCTCTCA-ACTCTCTGTC-AATTGGAAAT----------GTGTTCCAAGAGTCGTTGGAACC---------TGGGTCC-----AGTCTCGATATCCAtgtgataa--------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  343891 245 +   375229 aaaaaaaa--gaatggcgTCAT-ATGTGATAAGC-AACTTG------ACGAGTCAATCAGAACGAGGATGTAACCAATCGTCAGCACTACAG-GATGA-GACGACAGGTGG---------TCGGCGTCGgacgacgaaaaaaaaaagaa-----acctaTTCACTACTACTCG-TGTC-aaacggaaatgaaatgaaacgcGTTCCTAGAGTCCTA---------------------------AGCT--TCTAACCATGTGATAACAGt-------cgaaaaatctacaaaaattAGGTTTGAACAGAT
i caeJap4.Scaffold17084 I 1262 I 31

a score=4488.000000
s ce10.chrX             4076281 21 + 17718866 AATGAA-TTGTCGCGAACGCCA
s cb4.chrX              9179436 22 + 21540570 AATAAATGTGTTTAGAACACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1070097 21 -  4500979 aataaaaatgttc-gaaCACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039264 20 + 20921866 aatgaa-gtgtTG-GAACACCA
i caeSp111.Scaffold630  C 0 I 233
e caePb3.Scfld02_0      2350568  0 +  4147112 C
e caeJap4.Scaffold17084  344136 31 +   375229 I

a score=-4207.000000
s ce10.chrX             4076302 44 + 17718866 CAATA------------------AAAAATAAAAGCAAATTTATATAAGTTTTGAAAAAATAA
s cb4.chrX              9179458 39 + 21540570 CAACA------------------AAGCatgataagttttttttt-----tttgaaaaattga
i cb4.chrX              C 0 I 164
s caeRem4.Crem_Contig0  1070118 39 -  4500979 CAACAATCAAGTCGATGGAGATCAAATGTGAGAGGCTAC-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2350568 44 +  4147112 caaaa------------------aatgacggaaacGTTTGTTATTAGGGTTCCAACAGACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  344136 31 +   375229 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I

a score=-7846.000000
s ce10.chrX             4076346 148 + 17718866 GAAAATAGGAA----------GCCTAAAATAATGAGAGACTTGCTCTCTCTACTTTGACGAT--------TTATATCTCGGGTGTACAAATTAATCAAAAAAATTTCAAAAGTTCACTGTCAAAATGTTAAGAAATATGTCACGCGTATTTTATTGATGATA----ATTT-
s caeRem4.Crem_Contig0  1070157 149 -  4500979 GACAGTTGGAGAGAGGTGagcgttgaaaaaaaaaactgattttttttggctAA--TGACCATTATGTGTTTaatgttttg-------------attgaaaacaattaaaacattta--ATACAAATAAggagaaatttctgatctgAATATTCTTCATAATC----AGTT-
i caeRem4.Crem_Contig0  C 0 I 130
s caePb3.Scfld02_0      2350612  77 +  4147112 ----------------------------------------------------------------------TAAAGTGTCG------------------GAACACCACAAACAATCA--AATAGATTGAGAAGG----TTTGTTTTGAAAGGTTACCATAACTcgagaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  344136  31 +   375229 I
e cb4.chrX              9179497 164 + 21540570 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I

a score=-4317.000000
s ce10.chrX             4076494 389 + 17718866 CTAGATAATACCAAGGAGAATAGAGGTATAAGCTGTCAAAGTGGAGAAAAAGAAAACATGGTATAAAAATTGATTTCTTGGATAGGTGTCAAATTGGGTTGGTAAAAAAGTTAAAACCCCCATTGCTTAAAATAAACGATTTTGCCAATTATTTGTAAGCTTATCTGTTAACTAATTAAAAATTAACACTGTATGTTAATGGAAAAGTTCAAAAACCTGAAAtaccgtatttcttccaatagtagtgttgcaccccactacttccctttgaaaagttatattttggtttattttttaaatatcaacaaactgatatctaaaaatcgagattaaaaaataactgatactttatcagttaataattttatttagaacgaaaaacaacaaag
s caePb3.Scfld02_0      2350689 171 +  4147112 c-----------------------------------------------------------------gaattttattctT------------AATTGGTTCCgtgagaaa--------------------------------------attgtttttaaatt--------------------aTTGACA---------------AGACTTCAATAA----AATTGC-------------ATAGCAGGATT----------------TTTCACGAAgttcta---------gattttgaaaaataaaaaaatt----ttcaaacttt-----------ataactaacacttttttga--agtcattttcc---------aaaataataaag
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17084  344136  31 +   375229 I
e cb4.chrX              9179497 164 + 21540570 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=0.000000
s ce10.chrX             4076883 34 + 17718866 atatgtaatgcaacagttgaaaaatggggtaaaa
e caePb3.Scfld02_0      2350860 30 +  4147112 I
e caeJap4.Scaffold17084  344136 31 +   375229 I
e cb4.chrX              9179497 164 + 21540570 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=337.000000
s ce10.chrX             4076917 80 + 17718866 tactagtagagaagatacggtaATTATTTGAAATTCACCTATACATATTAGTTAATTATTATCTGACACAGA---AAATTTCC
s caePb3.Scfld02_0      2350890 51 +  4147112 TACTAGGA-----------------ATGTGAAATTGACCT---------------CCATCAACCGCGATAGAgctaaatttcc
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17084  344136 31 +   375229 I
e cb4.chrX              9179497 164 + 21540570 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=-2023.000000
s ce10.chrX             4076997 137 + 17718866 AAAAAAAAGCTGACTTCCGACATTCCTCCAAAGTTCTCTACTTATCCCCGTGGGACATCATTTCTCGCCATATAATTGATCTAGTGCAA-CAGAACCAGCAACAAAAAAAGATTTAAAGAATGAACGAGGACGATATC
s cb4.chrX              9179661  98 + 21540570 aaaaaaaag-------------ctaacaCAACTATCTCT---------CTAGGgacatattttttctgtgGATAATTGATCTACTCCACAGTTTTCCAGAAACAAAAACTGATTTCTAAA------------------
i cb4.chrX              I 164 C 0
s caePb3.Scfld02_0      2350941  99 +  4147112 -aaaaaatgtt--------ctacTCTCACAG-GAACTCT---------Catgggaattattttcaaaatgaa-aattgatctaGTTTAT-GTCTatgtgaatgaaaaacaaaaccgTTCA------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  344136  31 +   375229 I
e caeSp111.Scaffold630  6039284 233 + 20921866 I
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=251.000000
s ce10.chrX             4077134 4 + 17718866 TCGA
s caeJap4.Scaffold17084  344167 4 +   375229 TTGA
i caeJap4.Scaffold17084 I 31 C 0
e caePb3.Scfld02_0      2351040 0 +  4147112 C
e cb4.chrX              9179759 0 + 21540570 C
e caeSp111.Scaffold630  6039284 233 + 20921866 I
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=1187.000000
s ce10.chrX             4077138 2 + 17718866 AC
s cb4.chrX              9179759 2 + 21540570 Gc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6039517 2 + 20921866 ac
i caeSp111.Scaffold630  I 233 C 0
s caePb3.Scfld02_0      2351040 2 +  4147112 ac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344171 2 +   375229 GC
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1070306 130 -  4500979 I

a score=15870.000000
s ce10.chrX             4077140 15 + 17718866 GTTTCCAGACAAAAA
s cb4.chrX              9179761 15 + 21540570 agtttcagacaaaaa
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0  1070436 15 -  4500979 gttttcagacaaaaa
i caeRem4.Crem_Contig0  I 130 C 0
s caeSp111.Scaffold630  6039519 15 + 20921866 gttttcagacaaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2351042 15 +  4147112 gttttcagacaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344173 15 +   375229 GAttcttgacaaaaa
i caeJap4.Scaffold17084 C 0 C 0

a score=4154.000000
s ce10.chrX             4077155 29 + 17718866 TATGTAAAACGG---GCGGCGGGAAAGCAATC
s caeRem4.Crem_Contig0  1070451 28 -  4500979 ---attgaatggtgTACAACGAG-GAGCAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039534 31 + 20921866 tatGTTGAATGGTGTACGGCGAG-GAGCAATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2351057 28 +  4147112 catGTTGGATGGTGTA---CAAG-AAGCAATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344188 24 +   375229 -------aattgcgagcGATTGT-AGGGAAAC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9179776 34 + 21540570 I

a score=250898.000000
s ce10.chrX             4077184 336 + 17718866 CGAAAGG-AAATATGTCACTCACTG-------GCTTGAAAATCTAAATATGCATGACCTACCTTCTCAAC-ATTTGTTTGG--------TAGAAAAGTCGGGTCGGAAACAAAACAAAACGTTTATAAG---CGATGTTTTTCCACT-ATGATATGAGACGAGAAAC-------------------------CTC-----GGA-------CCGC-TGTCGTTGTTCAAAGAAATGATATGATGCTTGTCAAAACGTGACTGGC-----AATTCAGTTCGGTCAAAAAT-GGAGGCGGAAGGGTGGGATAGATAATGGAAATATTGGAGGGTAGGAGTCACAAAAACCAAAATTACATGACAAAATTGCAATGTTAAGTAGGCAG-----ATTTGTTTGCCAATGAG
s cb4.chrX              9179810 363 + 21540570 -AGAAGGCGAATATGTCACTCA-TG-------ACTTGAAATCCTAAATATGCATGACCTACCTTCTCAACAACCTAGTCAAAAATAGGGAAAGAAGGC--GGTCGGAAACCAAACAAAACGTTTATAAAAGCCGGTGGTTTT-CAAT-ATGATATGAGAGGAAAAAC------CCCCGGGTCC---CAAGCGCTCTCGGAGAAGCAGTA-CCGCTTGTCG-TGTTCAAACAAATGATATGATGCTCGTCAAAACGTGACTGGCAGTCTAGTCCGGTTCAGTCAAAAATGGGCGGCAGAAtggg-------agaaatgaaaaaa------ataggagtcAC-AAAACCAAAATTACATGACAAAATTGGCATGTAGAAGAGGCAG-----ATTTATTTGCTAAAGAG
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0  1070479 365 -  4500979 CGAGAGGCAAATATGTCACTCA-TG-------GCTTGAAAATCTAAATATGCATGACCTACCTTCTCAAC-ATttggtggagaa-----gaagaaagc--ggTCGGAAACAAAACAAGACGTTTATAAG---CGGTGTTTTT-CAAT-ATGatatgagaagaaaaacggaggTCCCGGGGTCCGCAGAGGCGCTT-----GAAGCAGTA-CCGC-TGTCG-TGTTCAAAGAAATGATATGATGCTCGTCAAAACGTGACTGGCAGTCCAGTCCAGTCCAGTCAAACAT-GGCGGCGGATTGAGG-----CAGAAAGGAAAAACTGGAGTCTGGGAGTCAC-AAAACCGAAATTACATGACAAAATTGCTATGTTGAGTGAGCAG-----ATTTGTTTGCTAAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039565 362 + 20921866 CAAAAGGCAAATATGTCACTCA-TG-------GCTTGAAAATCTAAATATGCATGACCTACCTTCTCAAC-ATTTAGTAGA--------GAAAAAGGC--TTTcggaaacaaaacaagacGTTTATAAG---CGATG-TTTT-CAAT-ATGATATGAGTAGAAAAACGGGGGGTTCCCGGCCGGCGGAGGCTCTT-----GAAGAAGTACCCGC-TGTCG-TGTTCAACGAAATGATATGATGCTCGTCAAAACGTGACTGGCAGTCCAGTCCAGTCCAGTCAAACAA-GGCGGCGGAtagagg-----aagaaagaagaaaccgGAGTCTTGGAGTcac-aaaaccaaaattaCATGCCAAAATTGCTATGTTGAATAGGCAG-----ATTTGTTTGCTAAGGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2351085 362 +  4147112 CGAGAGGCAAATATGTCACTCA-TG-------GCTTGAAAATCTAAATATGCATGACCTACCTTCTCAAC-ATTTAGTCGA--------GAAAAAGGC--GGTcggaaacaaaacaagacgTTTATAAG---CGGTGTTTTT-CAAT-ATGATATGAGAAGGGAAACAGGGGTCCCGGGGTCCGCGGAGGCGCTT-----GAAGCAGTA-CCGC-TGTCG-TGTTCAAAGAAATGATATGATGCTCGTCAAAACGTGACTGGCAGTCCAGTCCAGTCCAGTCAAACAT-GGCGGCGGATAGAGG-----GAGAATGAAAAACCCGGAGTCTGGGAGtcac-aaaaccaaaattacATGACAAAATTGCTATGTTGAGTAGGCAG-----ATTTGTTTGCTAAAGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344212 297 +   375229 --------AAATATGTCACTCA-TGACTGGATACTGGATAATCAAAATATGCATGACCTACCT--------ACCTGCTCAA----------------C--GTTTACAAACAAAACGAGACGTTCATAAG---TGGTGTTTTT-CAGTCATTATTTG-GAAGAAAGGC---GGTGTCTGTGCCTGGA--------------AAAGCAAGA-AGGC-TGTCG-TGTTCGAAGAAATGAGATGATTCTCGTCAAAATGTGACTAGC----------AGACTAGTCAAACAC-GGC-------------------------------------CCACGAGCCGC-AAAACCAAAATTACACGAGCAAATTGCCATGTTGAGTAGGCAGGATATATTTGTTTATCATAGAG
i caeJap4.Scaffold17084 C 0 I 91

a score=-22663.000000
s ce10.chrX             4077520 101 + 17718866 TCAACC--GCGCATGTCTTGGTCAGCTTTCAGACATCAGA-----------GCATTCAGATTTTAGGGCATCAAAAA---------------ATCTCGACGTGTTCTTTCCTTATTGCCTTACAAAATA
s cb4.chrX              9180173  66 + 21540570 TCTTCAAGAagcatttttaga-------ataaaaatggaa-----------------------------aacg-------------------gTTTCGAAAGAATT----CACATTTCTA----GAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1070844  99 -  4500979 TCTTCA--ACGTCTTTTccgat---tccaaaaaaatgagacaatGTGGAATTCATTGCGCAACCA--TTACCG-------------------ATTTCCAAATACTT----CTCAATCTGATAATGACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6039927  78 + 20921866 TCGTTA--GTGTCTCCGAGAgt---cccagaaaaaaaa-------------tcatttggaaaaaagatcatcgcggt---------------gtttcaaaatattt------------------tcgac
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2351447  96 +  4147112 TCTTCG--Atgtctttctgaat---tttgagaaaaaaata----------cttattgCGAAAGAAATTGACCtcaggaatgaaaaaaaataaatctcaaACATTTT------------------AATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  344509  91 +   375229 I

a score=197267.000000
s ce10.chrX             4077621 240 + 17718866 GAGTGATAATGGAGAAAATGGT--------CAG------AAACTGAATAAACATGCAAACTATGTAAGCAGTGTGTGATGAGCAGTCTAAACACGATGAGGGATAACG----CGCTTCTCTTCATCTATCGGCGGCTCTTTGTTACTTGGTGCTCTTTAGGTGTCATGGGGATTCGAGTTGTCT-TTTTGTCTTCT-------------GCATGGT----CTAAATCTTCACCCTCATTTT---------------------TTAGATGCATGTTTTTT----CCAGTGCAAAAGGTCAAA
s cb4.chrX              9180239 262 + 21540570 AAATGATAATG-AACTGACAGTAAGTGGTACGG------AAACTAAATAAACATGCAA-------ACGCA--GTGTGATGAGCAGTGCAAACGGGATGAAGGATAACA----CGCTCTTCTTCATCTATCGGCGGCTCTTTGTTACTTGGTGCTCTTTAGGTGCCATGGGGATTCAACTTGGCTCTCTTCCACTTGAG-------GGAGGCATGGT----TCAAATCTTCGCcctcatttcaaaaatatcagctcatttt--ttatgtgcttgttttttt------gtctaaaaGGTCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1070943 256 -  4500979 caatgataa---aaatgatggT--------CGG------AAACAAAATAAACATGGAAAACATGTAAGAA--GTGTGATGAGCAGTCTAAACGCAATGAGGGATAACG----CGCTCTTCTTCATCTATCGGCGGCTCTTTGTTACTTGGTGCTCTTTAGGTGTCATGGGGATTCGACTCGCCT-TCTTCCACTTG------------TGCATGGT----CTAAATCTTCGCcctcatttc-aaaatatcagctcatttt--ttatgttctcgttttttt--tctcttttaaaagGTCAAA
i caeRem4.Crem_Contig0  C 0 I 255
s caeSp111.Scaffold630  6040005 260 + 20921866 CGGtgataatgaagaaaatggt--------tgg------aaacaaaataaacatGCAAAACATGTAAGCA--GTGTGATGAGCAGTCTAAACGCGATGAGGGATAACG----CGCTTTTCTTCATCTATCGGCGGCTCTTTGTTACTTGGTGCTCTTTAGGTGTCATGGGGATTCGACTCGTCT-TCTCCCATTTG-----------AGGCATTCT----CTATATTCTTgccctcatttc-aaaatatcagctcatttt--ttatgtgcttgttttttc--tctctttcaaaaggtcaaa
i caeSp111.Scaffold630  C 0 I 244
s caePb3.Scfld02_0      2351543 258 +  4147112 TGGTGATAATGAAGAGAATGGT--------agg------aaacaaaataaacatGCAAAACAAGAAAGCA--GTGTGATGAGCAGTCTAAACGCGATGAGGGATAACG----CGCTTTTCTTCATCTATCGGCGGCTCTTTGTTACTTGGTGCTCTTTAGGTGTCATGGGGATTCGACTCGTCT-TCT-CCACTTG-----------AGGCATGGT----CTAAATCTTCGCcctcatttc-aaaatatcagctcatttt--ttatgttctcgtttttt---tttctgtcaaaaggtcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344600 284 +   375229 AAGTGATGAGAGTGATAATGGT--------TGGCCGAGAAAACGAAATAAACATGCAAAACAAGAGATCA--TT----CATTCAGTCTCAATGCGCAGA-GGATAACGCGCTCGCTTCTCTTCATCTAGGAGCCGCTCTTTGTTACTTGGTGCTTTTTAGGTGTCAAGGGGATTCGGCTCGCTT-TCCACTTTTCAAGATGTGCTGGCAGCATGGCTGGACCAAATCTTCGCCCTCATTTC-AAAGCATCAGCTCGTTTTTATTATGTCCTCGGttcttttttactttttaaaaGGTCAAA
i caeJap4.Scaffold17084 I 91 C 0

a score=-20182.000000
s ce10.chrX             4077861 167 + 17718866 ATTCGTTCCGGCTGACCACAACAGATTTCCTCTGATAGAGTGGAGCTTTTTTGTTCATAGTTTTACATTTTTAGTATTGCATTT-AAAAAAT-TTGTAGAAACGCCAATAAGGA-AAATGTTTCAAACCACTTATTTGATGCTGAAAAAGCTAAAAAACTTTAAAACAAG
s cb4.chrX              9180501 127 + 21540570 -CTTTAgctttgaaacaaaaagagaggGTTTCAATTGCCACAAAGGCCttt---------atgtgatttttcagaattttaatt-aGGTTAT---------------ATAAGGATTAATTTTGTGTAC----------------AAAAAGGGGCGAAA-TTCAAAGTACG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2351801  74 +  4147112 ----------atggataaaaatCGACGGATATGCTTCAAATAAAGATCTT-----------TGTGAGTTCTGAGACT---------------------------------GGGATCAAGGTTTCTTAC------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  344884 158 +   375229 -CTTAAAACTACATATCAGACGCGTGTACTGTAATATGAATATagtgtatttttttattattttttatctttattcctcaaattcaaaatatatggcaacattttttaaaaagaaaaatg------actacgtgtttga-----aaaagaatgaaaaaaataaataaaag
i caeJap4.Scaffold17084 C 0 I 40
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=-11864.000000
s ce10.chrX             4078028 247 + 17718866 TTTTGAAGATTTATAGTAAAAGA--AACAAAAATTCAGATTTTGCCTGAAATTTATT-----TTTTGAAATCAATAAAAAAAAGAAATGCCCGTATTTTTTAATTTGTTCTCATTTTCTGTATTTGATCAATAACTGGGTTTAAGTCTGCTCCATTACTCAAAAAAACCAATTTTTTGAAACATTTTTAATTTACCCAAACTTTGTCAATTCACCAA----AACTTGACTGAAAATATTCACTAATTTAGAAATTTTG-
s cb4.chrX              9180628 170 + 21540570 GTAT-----TCCCTGATACAAGACCATTGAATAATCGAACTTGTGCTAAACTGTCTCGGTTCTTTTAAGA------------------------------------------GACAtctaaaatttgtgaatt----gataaaa----ttctTATCATTATAACA--CTAATCTT-------ATTGTAGTTTGA-------ATTTCtatatctctaataggaac---aCAGaaaat--------------agatttca-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2351875 149 +  4147112 ----------------------ACCACTAAA----CGGGCTTGT-CTAAAAAGCATCAACGATTTAGAAA---------------------------------------------ATCT--ATTTTAATAACa----ggaaaacggtttttttgtCATTACGAGAATCAAACTTT-------TGCGTCAATTGA-------TTGCAGGTTACTCCAA----agc---tccgaaaat-----------tcaaaactcctA
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold17084  345042  40 +   375229 I
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=-64.000000
s ce10.chrX             4078275 64 + 17718866 AGAGAGTTATATTATGGTATTTGGTCATTTAGATTAGTGTATTTAGTGCAAATCAGCATTACCG
s cb4.chrX              9180798 52 + 21540570 aaaaaatataatgatGATCT------------ATCAGAGTATTTatgctgaattcaatttttca
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2352024 39 +  4147112 I
e caeJap4.Scaffold17084  345042 40 +   375229 I
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=-14484.000000
s ce10.chrX             4078339 325 + 17718866 CTATCACACCTTCAACATTACAGTGCATAGTTTTGCTGCAAAACACATCATTAATTATGTGTACTTTTTTTTCAACTTGAAGTATTTCTTATTTGATCTTATGAAACAACTCATTTTTTTGGCATTCAAAACAAGGTAACAGATAGGATTTTTTAAAAATTATTTCTGAAGCGGATTTTGGTTT----AAATTTTGTTATAATCCCAGACAAAT------------------TTAGGTAAA--------AAATTTTGGAATAGT--AGCATCAGAACTAAA---AAAACAAGGAAACTATAAATTACAGCTTCACCAAAAATTCATAGAAGTTTCTTTATAACTTCATCAAAGAAAAAAA----
s cb4.chrX              9180850 294 + 21540570 gaatctcga--tgaacattg------acaacatttttacaaaaagattcat----------------------aattcaaaaaatcagaca---aaagcaaatgaaaaatacagtGGGGTAGTATT---------TTAACAGGT--AATTGGGTAACAATTTTTTGCTAAGCT-Atcataattc-----aaaattattcaaaacctagaaagtttcttatttcaaaaaattttcaaaaaatttattttcaacttttgcaaaaataaaatttttgaatttgattcaACAGATAAGCCTCATACTTTTGAGGT----------------AAAATCGTTTGAAAAGATcaacacacaaaaaaa----
i cb4.chrX              C 0 I 64
s caePb3.Scfld02_0      2352063 179 +  4147112 --------------------------CTATCATTCTTCCAAATG-------------------------------------------------------AACGGTAAAATACAACTTCTACGTTCT---------ataa-------aactcttgaaaaattttcttttaaacT--TGTTAATTTCTCTGAATATTAATCAAATCCTAACA----------------------TCAGGGAATG-------AATTCTTGGAATAAT----------------ATTcaagaagaggaaaatatGCTTTT-----------------------------------------Ccacacaaaaattattt
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17084  345042  40 +   375229 I
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=0.000000
s ce10.chrX             4078664 46 + 17718866 CTAAATTTAGGGAATCCGAAAAGGCTATTGACTTGGGTAGAAGCTC
e caePb3.Scfld02_0      2352242  0 +  4147112 C
e caeJap4.Scaffold17084  345042 40 +   375229 I
e cb4.chrX              9181144 64 + 21540570 I
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=442.000000
s ce10.chrX             4078710 6 + 17718866 TTCTTG
s caeJap4.Scaffold17084  345082 6 +   375229 TCCTTG
i caeJap4.Scaffold17084 I 40 C 0
e caePb3.Scfld02_0      2352242 0 +  4147112 C
e cb4.chrX              9181144 64 + 21540570 I
e caeSp111.Scaffold630  6040265 244 + 20921866 I
e caeRem4.Crem_Contig0  1071199 255 -  4500979 I

a score=141812.000000
s ce10.chrX             4078716 363 + 17718866  
s cb4.chrX              9181208 401 + 21540570  
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig0  1071454 391 -  4500979  
i caeRem4.Crem_Contig0  I 255 C 0
s caeSp111.Scaffold630  6040509 370 + 20921866  
i caeSp111.Scaffold630  I 244 I 1
s caePb3.Scfld02_0      2352242 341 +  4147112  
i caePb3.Scfld02_0      C 0 I 72
s caeJap4.Scaffold17084  345088 438 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-16521.000000
s ce10.chrX             4079079 76 + 17718866 CGGCAGATA--CGAAGG------------A---CCTGGTAGTCGTTGAAGAGTT---AATCTTATTTTTT-CCTTTAAATGTCTTCCAATTCAACTC---
s cb4.chrX              9181609 57 + 21540570 -------TA--TTGATT------GGATCCA---ATTCTTCGAAAAtgaaatcattaaaattttcttttct---ttta--------------a--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1071845 66 -  4500979 -------CAGGTAGATC-------TATTCg---cttttttagaaatgaaggTCT---AATTCTGTTTGTTGGCTTTAC------CACAGGCG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6040880 74 + 20921866 CGGTAGGTA--TGGACC------AATTTCATTCCTTCTTGGCAAATGGGAgact---gatttcattttca-acttcaA------CTCAATCC--------
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold17084  345526 84 +   375229 CAATTGGCT--TGACTCAATTGGAAATCTT---CTTCTCCAGTAATGTGGAGCT---AATGGCATTTTTA---TTTACAAGACTACTGATTG-----AAG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2352583 72 +  4147112 I

a score=78662.000000
s ce10.chrX             4079155 222 + 17718866 AATGTTCCTAGTAAA-------------------TCTTTTGTGTCGGAAA-----------------CTATCACGTAGAAGAGCTTAC-----ACAGAGACAACCAAAACACAACACATCAC----GACA--AAGTTTTTATGTTTCG---AAGAACTTTGCGGTTTTAAAAAA-----TATACCAGTTGGGTTCTGAAAG---------------------ATAAGT---GAACTAACCTTATGAGTTTCTCTAAGCTCCCCATGACTGCTGGATGGTGAAGGAAGTTGCCACCTGGAAA
s cb4.chrX              9181666 230 + 21540570 aactttcCCAACAAA-------------------TCCGTTCTGTCAAAAA-----------------CTATCAGTTACACAAG----C-----ACAG-----ATCAAAACACAACACAACAT-TATGTCT--Gatgttttatgt--------------ttttggtcccaaaactttttctgaactttACAACTTT-GGAAGTTT---GGTCCGAAAATGTATGGAGATCTCGAACTGACCTGATAAGTTTTTCCAAGCTGCCCATAACTGCTGGGTGATGAAGAAAGTTgcttcctgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1071911 227 -  4500979 CACGTTCCTAGGAGA-------------------TCTTCTCTGTCGGAAA-----------------CTACCAGTTACACGAG----C-----ACAG-----ATCAAAACACAACACCACATATATTTCT--GATGTTTTATG---------------TTGTATTCgtcaaacttt---tgaacttgacaagttt-tgaagttttgaagaaCAAAGACCAATAAAACT---GAACTAAccttatcaatttttccagactcCCCATGACTGCTGGGTGATGAAGAAAGTTGCCACCTGTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6040954 208 + 20921866 AATGTTCCAAAT------------------------TTGTATGTCGGAAA-----------------CTACCAGCGGGACGAG----C-----ACAG-----ATCAAAACACAACacaacatttattttt--gatcttttatgtttt-----------ttgttgtcagAAAAGATGTTTTAAACTTGAGAGTCTC--------------------ACTTG--AAGAGT---AAACTGACCTTATAAGTTTTTCCAAACTGCCCATGACTGCTGGATGATGAAGAAAGTTGCCACCtagaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2352655 236 +  4147112 AAAGTTCCGAATAAA-------------------TCTTCTTTGTTGGAAA-----------------CTACCAA-AAGCCGAG----C-----ACAG-----ATCAAAACACAAcacaacatttattttttcgatgttttatgtttc-----------ttcttttttttggagatcttttGAACTTGAACAACTTCGAAAGTGATAatgttttaaatttgaaaaaaat---taactaacCTTATTAGTTTTTCCAAACTACCCATGACTGCTGGATGATGAAGAAAGTTGCCACCTGCAAA
i caePb3.Scfld02_0      I 72 I 1221
s caeJap4.Scaffold17084  345610 255 +   375229 AATGTTCCAACTAAGATtggtattttcttttttcctttttgtgttttaaaagttttttctttcttttctgttgtttttaaaag----ccggaaacat-----tttttAGCACACCACTACATAAATCATG--CGATTTTGACagttcggaaaaaaattctacaATTATA----------TGTactttctgaaatt----------------------tcataaTAAAT---AAACTAACCTTATAAGCTTCTCCAGACTACCCATGACTGCTGGATGATGAAGAAAGTTGCCGCCTACAAA
i caeJap4.Scaffold17084 C 0 C 0

a score=-4350.000000
s ce10.chrX             4079377  2 + 17718866 -------AT-
s cb4.chrX              9181896  2 + 21540570 -------at-
i cb4.chrX              C 0 I 1568
s caeRem4.Crem_Contig0  1072138  2 -  4500979 -------TA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6041162  1 + 20921866 --------a-
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold17084  345865 10 +   375229 AAGATTAATT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I

a score=-4782.000000
s ce10.chrX             4079379 49 + 17718866 GGTGATTGTA---AGCTATTTAAAATGTTCATAAGCATATTTAA-----ATAAATCT-----
s caeRem4.Crem_Contig0  1072140 51 -  4500979 ------tgtaaaaactaatttcaaatgaaaatgagaatcttTAGTGAATGTTGAGAC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6041164 39 + 20921866 -------------gattttttcagaaaaaaataaaaacaaatag-----gCGGGGTC-----
i caeSp111.Scaffold630  I 1 C 0
s caeJap4.Scaffold17084  345875 44 +   375229 -------------AGTGTTTGAAAAATGACGTTCAAACAAATAA-----ACTCATCCAATTT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e cb4.chrX              9181898 1568 + 21540570 I

a score=-1552.000000
s ce10.chrX             4079428 42 + 17718866 TTACTAGT---TTATAAAATTT---------TCGAGCAGTTTTGTTTCA--------AGTTA
s caeRem4.Crem_Contig0  1072191 59 -  4500979 TAACTAAT---TAAAAAAGCCTTTATGAAGAATTAGCAACAGAGAAGTGTCTGTGCAAGTTA
i caeRem4.Crem_Contig0  C 0 I 99
s caeSp111.Scaffold630  6041203 48 + 20921866 TGAATAATATATTCGAAAACAT------AGATCTtgtaattttgaatgg--------aaTTA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I

a score=-1646.000000
s ce10.chrX             4079470 91 + 17718866 TTATAGACCACCTTTTTCAATACGTTAAAATAATTAAGCGATAAAAATCAATCTTGTTAGGTATGCatatttttttttaaatatatttttt
s caeSp111.Scaffold630  6041251 45 + 20921866 CCAT-----------------------------TTAGATGGAAAAGAT------------GTGTACGAAATTG-----AGATTTGGCATCT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I
e caeRem4.Crem_Contig0  1072250 99 -  4500979 I

a score=-4647.000000
s ce10.chrX             4079561 128 + 17718866 cattaaattaaatt---attttCTCAAGCCTTTGAGTTCCA-----GCTTTTTGATTTTTCAATCAAGAACA--ACTCAATTTTTTTA----AATTTACAATTTTTACTGGATTAATTGTAAGTCGTTTTTATCAATAAGTT-----------
s caeRem4.Crem_Contig0  1072349 110 -  4500979 CATCaagtgaaatt----tttgcaaGGA----AAATTCCCGTGACCggtttttttgattaaaaagaaat-----aatcaagaaatttaaa--aaatcataagtTACACTT-----------------TTTTACCAAGTATTT-----------
i caeRem4.Crem_Contig0  I 99 I 41
s caeSp111.Scaffold630  6041296 127 + 20921866 -------CAAAATttacgttttcaaaaaccgtcAATCTCCAGAA--GATTATAGTGATGATAATTAAGCATATGAATTGTCtattttaaatcaaaacaCGATGTCAACTG-----------------TCTTGCCCATCTTTGATCAGAAACTC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919   0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I

a score=-461.000000
s ce10.chrX             4079689 61 + 17718866 AAATTTAAAGAGCGA-GTTGCACAAAAAAAATATAATTTTTCGGAATTTTCTTGAATTTTCT
s caeSp111.Scaffold630  6041423 56 + 20921866 AAACATCAATGTTGATATAATACAGAAATGA-GTAATAAGGtcgtatttttttcaat-----
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I
e caeRem4.Crem_Contig0  1072459 41 -  4500979 I

a score=510.000000
s ce10.chrX             4079750 21 + 17718866 GCCAATTTTCAATCTGAAAAT
s caeRem4.Crem_Contig0  1072500 21 -  4500979 gccgggtcacagtacaaaaat
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold630  6041479 17 + 20921866 ----atttttgactTAATAAG
i caeSp111.Scaffold630  C 0 I 112
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I

a score=-978.000000
s ce10.chrX             4079771 122 + 17718866 GTACAAATAATCCAGACAGTTCTAAAATGTTTCCTGTCATTTTCTGATAATTTTGGCAATTTTCATGTTTCACT----TTTTGCGTAGAGTTTAATGTTAAGATGTTAGTTAATATTTTTAAAGTT
s caeRem4.Crem_Contig0  1072521 105 -  4500979 ttgaaaat---ttgaatttttttgaaattttt-------ttttcgcaaaa-------aagtcgaatcttcgactatgtttttacatatcgataaaactcaag--tttacataggatttttgact--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919   0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I
e caeSp111.Scaffold630  6041496 112 + 20921866 I

a score=-2268.000000
s ce10.chrX             4079893 71 + 17718866 TGCATTTCAAATTTTTTTTGAAAATTCAA------TGTAATTTTAAAAAAATACTGTGAATATGTAGTAGCGATTAT---------
s caeRem4.Crem_Contig0  1072626 60 -  4500979 ---------atttttgacgaaaattttaa------agaa--tttcgaaaaattttgtgaaaaa---------attgtgctcatttt
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold630  6041608 81 + 20921866 tgaacTTCAATGTTTAGGCGAGTTTTTAAACCGACAGTA--CAACGATtcattttgtaaaaaa-tattctggaTTGTCCTTTAT--
i caeSp111.Scaffold630  I 112 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I

a score=-235.000000
s ce10.chrX             4079964 33 + 17718866 AAGAACTGAAATAAAGTTAAGATTACGGAAAAC
s caeSp111.Scaffold630  6041689 23 + 20921866 AATCA----------GTTAGTACTCTGCAAGAT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919  0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I
e caeRem4.Crem_Contig0  1072686 61 -  4500979 I

a score=-14034.000000
s ce10.chrX             4079997 181 + 17718866 -CCGATATGTTTAGTGGGGCCTCATAAAAATATCAGAAATATATTAAT----------CGGTACT------TCTTAACAGTTTTAGGTCTGAAAAAGTTTGA------------ACTTCAAAATATTTTAACACTAGAACTATCCCG----------TGTACTTTACTTATGAAATTAATAATCAAATCTAGAAAA----------TATTACAGAAAAGCTGAAGCAAAA
s caeRem4.Crem_Contig0  1072747 215 -  4500979 -ccgatat-tttgcaggTATGGTAT-CTACTCTCAGTCTCA-CTCAACAATAAGAAATTGATACATTCCATTCTTAATA--TTAAGGACTG----TGTGTGAATTGCTATTATTAATCTAAAATCTTGT---ACTCAAACCAGCTCCTTCGAACAAAGATAATTGAATAGTTGAGATAACaatgaaccaaaaaaaaaccttaattctatttttgaaaaa--aaagtagaa
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold630  6041712  88 + 20921866 CTCACTTT-TATATTGCTACAGTA---AGCCACCAGATCTA-ATCAAC----------TGAAACA-------------------------------------------------AATCTGA---------------GAATCTACCCC---------------------------------------------AATAgacatgtttctttttc------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2352891 1221 +  4147112 I
e caeJap4.Scaffold17084  345919   0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I

a score=273.000000
s ce10.chrX             4080178 1 + 17718866 A
s caeRem4.Crem_Contig0  1072962 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 30
s caePb3.Scfld02_0      2354112 1 +  4147112 A
i caePb3.Scfld02_0      I 1221 C 0
e caeJap4.Scaffold17084  345919 0 +   375229 C
e cb4.chrX              9181898 1568 + 21540570 I
e caeSp111.Scaffold630  6041800 0 + 20921866 C

a score=2000.000000
s ce10.chrX             4080179 3 + 17718866 ACG
s cb4.chrX              9183466 3 + 21540570 ACT
i cb4.chrX              I 1568 C 0
s caeRem4.Crem_Contig0  1072993 3 -  4500979 ACT
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  6041800 3 + 20921866 act
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2354113 3 +  4147112 ACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  345919 0 +   375229 C

a score=197112.000000
s ce10.chrX             4080182 341 + 17718866 TACCTATTTTATCTAAATTAGCCGGGTCG---TGTTCTTGTGGGTCTTGGTGATCCGAGTAGCGAACCAAATCGGGTATTTCAAGTGAATCCGGCGGTGCACCACCTCCGCCGCTCTCTTCAGAGTCGCTGC--AATTGA-ATAAAACTGTTTATA-TTGTAATGAAGAACAA--TGTGTGAAACT----------AAACCATATG---GACAAT--TTTT----------TTCTGCAGTTTAGATGTTTAG--------AAAAAGGCGGAAAAAG------------------TTGTGTGTGGGAAGAGAA-CACA---------------------------CAGAAATCAAGAGCGT-------AGAAAAGTT-GAACAAAGA------------GATGATTTTGG---------AGGCGAGATTTTTTTGTTGCTCAAAACAGAAATACATTTT
s cb4.chrX              9183469 378 + 21540570 CACCTAATTTATCTAGATTTGCTGGATCGTGATGATCACGAGGATCTTGATGATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGC-AAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGA---ATTCGAAACC----------GAACCATATGTAAAAAGTTTATTTC----------TGt----gtttagatttttga--aaaaatgggggagaagaggaagaagaaaaaactgcgTTTTTTGTGGGTGGGAAAAGAA-CACA---------------------------CAGAAATCAAGAGCAT-------AGAAAACTT-GGACAAAGAGG-----CATTTGatgattttgggattttggtggaaaaaaatgtt---tttctccTAAC------ACATTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1072996 336 -  4500979 TACCTAATTTATCTAGATTTGCCGGGTCGTGATGGTCGCGAGAATCTTGATGATCACCGTAACGAACCAAATCTGGGATCTCAAGTGAATCTGACGGTGGTCCACCTCCGCCACTCTCTTCAGAGTcgctgcaaaaattg---aaaactgtttata---gaaatggaagaaaa---cttcgaaatt----------aAACCATATG---Gacgtt--tttt----------cat----gtttagaTGT--------AAGcagaaaggaagagaaag-----------------tTTGTGGGTGGGAAAAGAA-CACA---------------------------CAAAAATCAAGAGCAT-------AGAAAAGTT-GGACAAAGAGG-----CATTTGATGATTTTGG---------AGGGAAGATTTTT---TGGCTCGAAAc------acatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6041803 354 + 20921866 tacCTAATTTGTCTAGATTAGCTGGATCGTTATGATCCCGTGGGTCCTGATGATCAGCGTACCGAACCAAATCGGGTATTTCAAGTGAATCCGGCGGTGGTCCTCCTCCGCCACTCTCTTCAGAGTCGCTGC-AAAATCA-A-ACAGTTGTTTATT--CATAATGGCCAATAA---GTTCGTAACC----------GAACCATATG---GACGTT--TTCTTCAACTGAGCTAt----gtttagattttttgacgcaaaaaaatgggaaggAAAAG------------------TTGTGTgtgggaaaagaagaaca---------------------------caGAATTCAAGAGCAA-------AGAAAAGTTGGGACAAAGAGG-----CGTTTGATGATTTTGG---------AGGGAAGATTTGT-----GCCCGAAAC------ACATTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2354116 343 +  4147112 TACTTAGTTTGTCCAAATTAGCCGGATCGTGGTGATCGCGGGGATCCTGATGATCGGCGTACCGAACCAAGTCTGGTATCTCAAGTGAATCTGGCGGTGGTCCTCCTCCGCCACTCTCTTCAGAGTCGCTGC-AAATCCA-ACAAAACTGTTTatt--tgaaataaagaaaaa---gttcgaaacc----------GAACCATATG---GACGtt--tttt-----tACGCTGT----GTTTAGATGTTtgg--------agaaaggaagaaaaag------------------ttgtGTGTGGGAAGAGAA-CACA---------------------------CAGAAATCAAGAGCAT-------AGAAAACTT-GGACAAAGAGg-----catttgatgattttgga--------aGGGAAGATTTTT---TGGCTCGAAAC------ACATTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  345919 376 +   375229 TACCTAGTTTATCAATGTTTGCCGGATCGTGATGGTCACGTGGATCTTGATGGTCAGCGTACCGAACCAGGTCAGGTATGTCGAGTGAATCGGGCGGTGGTCCACCTCCGCCGCTCTCGTCcgaatcgctga-aaaattt-gca-----gtttttt-------tggataaaattttgttttcaatttacgCCCCCAAAACCATctg---gaattc--aaaa----------att----gtttaga-----------aAAGAGAGTGTGGGGGGAAG---------------------TGAGAACGAAGAACA-CTcactcacacacacacaagcTTGCCTCCCTCAAAAGTCCAGAgcattgaggaaaaaaaaatt-gtgaaatgtCGAATAACGCTTAATGATTCCGG---------AGGAACATTTTCTTTTAGAAACGAAAC------GCATTTT
i caeJap4.Scaffold17084 C 0 I 70

a score=6596.000000
s ce10.chrX             4080523 36 + 17718866 CA-CATTTAA-GGGTGGGCTC--CGGGGCTCCGGGGCATC
s cb4.chrX              9183847 16 + 21540570 CAGCGTTTAA-GGGCGG-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1073332 32 -  4500979 ca-catttaa-GGGTGGGCTC--CGGGGCTCAG----ATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6042157 35 + 20921866 CA-CATTTAAGGGGTGGGCTCTTTGGAGCTGAG----ATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2354459 33 +  4147112 CA-CATTTAAGGGGTGGGCTC--TGGGTCTCAG----ATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346295 70 +   375229 I

a score=192811.000000
s ce10.chrX             4080559 520 + 17718866  
s cb4.chrX              9183863 467 + 21540570  
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0  1073364 526 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 365
s caeSp111.Scaffold630  6042192 505 + 20921866  
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2354492 515 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  346365 573 +   375229  
i caeJap4.Scaffold17084 I 70 C 0

a score=735.000000
s ce10.chrX             4081079 4 + 17718866 TTT-----T
s cb4.chrX              9184355 9 + 21540570 TCTACTAAT
i cb4.chrX              I 25 C 0
s caeSp111.Scaffold630  6042698 4 + 20921866 tct-----t
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2355010 4 +  4147112 tct-----t
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  346938 4 +   375229 ttt-----t
i caeJap4.Scaffold17084 C 0 I 384
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-12415.000000
s ce10.chrX             4081083  86 + 17718866 TTTGTTTCGAACTTTCTGTTGGTGTATATTTTGGTCCAAAATTGAAATTTGGTATGATGA-----------------GGGGTAAAATGTTTTTCAAAT----------TGAAT-
s cb4.chrX              9184364 103 + 21540570 CTTTTGAGAAGCTAG------GATCATA-TTTCGTCAAAATTT----CATTGCGTACTCAAAATTGCTGGTGTTCAATGAATAATATTTATACTAAATATTACTTCAGTTgagt
i cb4.chrX              C 0 I 132
s caeSp111.Scaffold630  6042702  42 + 20921866 tttttagcgGATTC-------------------GCAAAAAGTT----CCTTGTAT-------------------------------------TGAAAC----------TTGA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355014  55 +  4147112 cttttagGAGACCCA-----------------TGCTAGTAGTT----CCTCGTTTGATTA---------------------------TTTTGTTAAAT----------TCGAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-9792.000000
s ce10.chrX             4081169 154 + 17718866 CGAAAAAACAGTTGCCTTATGTAGGGAAAATGTTTGAAAAAAAAATTGTGCAAAACTCA-------AAGTTCA------GCAAATTTCAT--AACTAAAAACCCCGAATTGTT----------------TTCCATTCAAAGTCTATAAGCAATTTGAAGT--------AGTATTGTATCACAGAGTTTCGGTT
s caeSp111.Scaffold630  6042744  69 + 20921866 ----------------------------------TGTGAGGtca------aagaatttc-------aaattca-------------------gatcataattctagaattttg--------------------attcaatttct----------------------------------aaTGCTGTTct----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355069 187 +  4147112 AGGTCATACAAGT---TCATCCGATAAATGTCTTTGTGAAATCagttatgaaaaataacagtacaaaaattcgtttttcgaTAATTACTTATGACTATATTCAAAATATGTTGTCTTGGTATGCAAAAATCACATTCCATCCCTTAAACATGTCTGAATTCTCAGAAACGTATTGTA-TATACTGTTTC--TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I
e cb4.chrX              9184467 132 + 21540570 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-48351.000000
s ce10.chrX             4081323 333 + 17718866 CAATGTTTTTTTGGCAAACATTTA----TTGTTAAAACA-GGGAAAAATATTTAATTAGTTTTAAATCT------------------AGTTTAAAAGTTTAGTGAATGCTCACAATTTGTCGGAACTTTTTTCGG----------------------------TATTTCATTGAGTTTTTTGGCCGAAAATCAAAATTTTTT-------------TGCTGTT--TCACATTTAAACTCACAATTTGTAACTTAAGTCAAAT-------ACTTTTTCG--------------------------AATAAAAACTATTGGAGCATAACTCCGCGATAGGAAATTTTGTAGAATTGCTGAAAATAATTTCCTCATACTCCCGACTAAAAACTATGAAACTAAAAAATA--TGAAACTTTTAGAAATATTCCAAAATT-----
s cb4.chrX              9184599 271 + 21540570 tgatgttCCTATGtaaatcggtaaaaatgaattaaaatt-acgaaagccatttaaaagcgataaaaatagtcg-------------------aaaaaattaga----------aactag--gga---------------------------------------aaaataattgaa-----------------aaaatgttcc-------------cgTTGTGTCTAATATTTAACC---Aagtt------------------------gcttctttttcttttg-------------------aatgaGTACTACT---GTATCTCTC------------TTTATTACGAACTGACTAAATGTTATCctattcgaaaataaaaaaaaatatcagtaggtgaaatt--ttatgattattAGGTA----TAATATAAAATT
i cb4.chrX              I 132 I 23
s caeSp111.Scaffold630  6042813 210 + 20921866 --gttttcct--------------------------att--------tttttctattgt---aCAGTCTATCAC-------------TTTTCAAGAAACCTGG------TTACAATTA---------------------------------------------AAGCTAAGTCAG-------------------------TTATATT--------CGTTgcagaatatttttaaat---caattGATAT----------ATTGACCAGGCTTTT-----------------------------CGTAAAAGTTGC-------------------------TCTCGTAAAGTTTAATTGAG---------------AAATAATAGAAATAACTAGCCTA--AGGTTCATGATGAGTTTAGAAAT----TAGCATC-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355256 365 +  4147112 tagttttcct--gaaaaacacCAG----GTATTGAAATTTATGATagtttttccagtttgaaaCAAGTTCTCACATAATTAGTGcgtttttcagttaatttgaACAGACTGATAATTAG--AAATTGGCCTTCAAACAGAAAAGGTTATTAATGTGAAGGCTTGAAATGAGTCAG-----------------AGCATGTTCTACATTATTACGAACGTTACAG-TTCTATCAAAAA---CAGTCAGAACCGAAATTTCAGTCGATCGGGCTTTTGCTTCTTCTAATCCAAGTAAGCCTAGAGCAATATAATGTACG---ATGTCAAT-------------TTTCATACAATTTCGTCAAGTCTT-----------CGATCAGAACAAGTGCGATCTCATCAACTTGTCGATggtttt-------------catg-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=560.000000
s ce10.chrX             4081656 22 + 17718866 ACAATTGGTAAAAAGTGAGAAA
s caeSp111.Scaffold630  6043023 20 + 20921866 ACA--TAGTGTAAAATATACAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355621 20 +  4147112 aaa--taataaaaaaataagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I
e cb4.chrX              9184870 23 + 21540570 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-9711.000000
s ce10.chrX             4081678 66 + 17718866 AATTTTACTGTTAC--TGAAAAAAGCACTGTACTTATTTGAAAAGTTTTTTTAGTTCATTATGATTAA-------------
s cb4.chrX              9184893 63 + 21540570 AATTTTATTCTACAGATCTAATAGGTACTGTAC--CATGGT----------------ACTTTAATTACATCAGCTATGTTT
i cb4.chrX              I 23 C 0
s caeSp111.Scaffold630  6043043 50 + 20921866 AATGGCCTCCCGCC--TACAAAA---ACTGAGT--ATCTGA----------------ATTGTAATGAACTAGA--------
i caeSp111.Scaffold630  C 0 I 13
s caePb3.Scfld02_0      2355641 43 +  4147112 tattgtaacctaacttttcaaca---aatgtG---------------------------TGTTATGAACTTAA--------
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold17084  346942 384 +   375229 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-6070.000000
s ce10.chrX             4081744 65 + 17718866 AACTATTTTCGCAGGTGTCTAAATGATTTTTACAATTTTTAAATTGTGATATTTTGAGAAAGCAA---------------------------------
s cb4.chrX              9184956 70 + 21540570 -----------------GTTAGAT-------ACGGATCT----gtctgagattttttgagattgaaCTCAAAGCTACTTTTTTAATTCCCATATTTCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6043106 48 + 20921866 ------------ATGTCATGACAT---TTCCATCAATAT----CTATGAAA---TGAGAGATTGAGGGAA----------------------------
i caeSp111.Scaffold630  I 13 C 0
e caePb3.Scfld02_0      2355684 50 +  4147112 I
e caeJap4.Scaffold17084  346942 384 +   375229 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=-18988.000000
s ce10.chrX             4081809 133 + 17718866 TTCTAGAAGTTATATAATTCTGCAGCGA----ACCCCGGAAAATCAACAGAACCTCA------GTTTGCATAA------ACTATA----------------AAATAAAAATGTT---------------CACTGTTAAGACATCTCTGAATACTGA--------------------------ATACATAAAATTGGCAAAT-----CAAAT
s cb4.chrX              9185026 204 + 21540570 TCCCACCATCTACGTAATTCGGTCCTCACGC-CCACCTACAAATCAGC-ATACCACAGTTATTTTCTTCGTAACTATTCTCTATAATCAAAAGCATCTTAGTAACTAGAACGTAGTCATCAAAATGCGGCGACCTTCATCTTTTCATGAAATGAGAGATTACAGCTCcagtgaaaaaaagagacatctGAGGATGGACGAAGATTT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6043154  74 + 20921866 --------------------------------tggattgaaaa--aat-gaaccgCA------TTCTGAGGCA----------------------------GAACTAAGACACA---------------CGCTTTGCAC-------------------------------------------ACATCAGATGATGCCAAAC----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355734  91 +  4147112 -------ttctatgAAATGAGAGATTGATGCatcgactgaaaa--aa--gaaccacA------TTCTGTGGAA----------------------------GAGCTAAGACACA---------------CACTCT--------------------------------------------------TCGGAGGACGGCCAAT----------
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I
e caeRem4.Crem_Contig0  1073890 365 -  4500979 I

a score=11438.000000
s ce10.chrX             4081942 74 + 17718866 GACTTTTCTAACAACACACACACACAAACATATTTATAAAGTAAAATTCATAC------ACCA--GC--------AGACAAAAAGTATT-----A
s cb4.chrX              9185230 78 + 21540570 GCTTCTCCCACCAAGTCAAAAACACGAA------TATGAATTGAAATACATTTGAGGATGTCGCCCC--------AGAC---ACTTATTGGTGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1074255 68 -  4500979 GATTTTCCAACCAAAACATAAACAAGAA------TATGAGTTGAAATACATTT---GATGTCG--CC--------AGAC---ACTTATT-----G
i caeRem4.Crem_Contig0  I 365 C 0
s caeSp111.Scaffold630  6043228 63 + 20921866 --ACTCTCCACCAAATCATAAACAGGAA------TATGAATTGAAATCCATTT---GAGTTTG--CT--------AGAC---ACTCA--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355825 68 +  4147112 --CTCTTATACCAAAACATA------AA------TATGAATTGAAATACATTT---GAGGTTG--CCCGGTTGCGAGAC---ACTTATA-----a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  346942 384 +   375229 I

a score=300581.000000
s ce10.chrX             4082016 669 + 17718866  
s cb4.chrX              9185308 745 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1074323 716 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6043291 678 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2355893 675 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  347326 766 +   375229  
i caeJap4.Scaffold17084 I 384 I 111

a score=37666.000000
s ce10.chrX             4082685 139 + 17718866 AAAAT--CACGAGCCGAGGC----------------------GCTCGGAG-------------------CAAA--------------AAAAAAAGGAA------------------GAACGGCTCGCAAATAACTACTGGTTGTATAATTGC--AGCGTTTCGAC--TCTTTG---CCATATTTACAACTGTCCTTGACCTGTGAACTAGGCCTGTG--AGCC
s cb4.chrX              9186053 202 + 21540570 GGATCA-CGAGAG----AGTTGCGTCCCGTTGGGTAGATTCCAATCGGAAATTGCAGACGCTTTTTCATCaggaagaagcaaaaaaaaaaacaaaaagaaaagaaaaaagaaacacgaACGACTCGCAAATAACTACTGGTTGTAAAATTGTGGAGCGTTTCGAGACTCTTTTTGCCCATATTTACAACTGTCCTT----------------TCCTGATAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1075039 132 -  4500979 aaatca-tca------------------------------cgAGTCGGAGACT------CTTTTTTCATCagt--------------agaacaaaaaa------------------gaacggCTTTCAAATAACTACTGGTTGTATAATTGT--AGCGTTTCGAGAGTCTTTG---CCATATTTACAACTGTCCTT----------------TTTTGG-AGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6043969 133 + 20921866 aaaaaatcaagagtCAAAGT----------------------ATTTGGAGGC---------tctttcatcag----------------aaaaaaaacg------------------gaacgGGTCCCAAATAACTACTGGTTGTATAATTGT--AGCGTTTCGAG--TCTTTG---CCATATTTACAACTGTCCTT----------------TTCTG--AGCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2356568 144 +  4147112 AAATCA-CGAGAGTCGAAGGCTTTTCC-------------CAACTTGCAGACT--------TTTTTCATcggc-------------gaagaaaaaaaa------------------gaacggctCGCAAATAACTACTGGTTGTATAATTGT--AGCGTTTCAAG--TC-TTG---CCATATTTACAACTGTCCTT----------------TTTTG--AGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  348092 111 +   375229 I

a score=10744.000000
s ce10.chrX             4082824  60 + 17718866 ACAAAACAAGTCACGAAATGCATCTTTTTAAGCAAA-ATCAG----------------------CC---A----AAGAAAGTT-----------------------------------------------------------GGTCAAT
s cb4.chrX              9186255 142 + 21540570 AAAAAACAAGTCACGAAATGT---TTTTCCAGCAGAGACCCGgggcccagtatccaagggtacatcgaaa----aagggtacatcgagttcttagggcacattggttccaagggtacattggattgTTCGGTACATGTAGGtggacaaa
i cb4.chrX              C 0 I 198
s caeRem4.Crem_Contig0  1075171  62 -  4500979 ACAAAATAAGTCACGAAATGCGTGTTTTTCAGACAAGACCAG----------------------TCGGAA----AAGAGTG-------------------------------------------------------------GGACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6044102  68 + 20921866 ACAAAACAAGTCACGAAATGCGTGTTTTTCAGCAAGGACCag----------------------tcgaaaaaagaagaaagtc-----------------------------------------------------------gGTGAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2356712  64 +  4147112 ACAAAACAAGTCACGAAATGCGTGTTTTTCAGCAAGGaccag----------------------ttgaaa----aagaaagcc-----------------------------------------------------------GGTCAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  348203  54 +   375229 acaaaa----tttcaatttgtaTGTTTTCTAGCCAAATTT------------------------TTCAAT----GAGTCCGTC-----------------------------------------------------------GGT----
i caeJap4.Scaffold17084 I 111 C 0

a score=145724.000000
s ce10.chrX             4082884 288 + 17718866 ---TTGCAACAGCAACAACT--GAGAAA---GGAG-----TCCTCC-TGTCTGTCAAAGCTTCTC------------GCT-TTTAATTGGAAACCGTTTTTTTTTGACACTTTGACTTCT-TTGACAG-----ATGTGTACGTGTC----ACCGTTGCAG---ATCTTCGAA---ATTAG-AAAAACA--GCA-------------------GCTCGTACAAGTCAAACAT---ACACACTACA----CTACCCC--CAAAAAAGCTATGCATCTGAAATTCGCAAGAC----------GGATGAGCCTCATCCAAATCTTGGCTCTC-GA--AAATAGAT----TGGAGATCAATAACGTA--TAGAAAAAATGTATATA--
s cb4.chrX              9186595 315 + 21540570 ---CTGCAACAGCAACTACG--ACAGAAATTAGAGTTCTATGTTCCTTGCCTGTCAAAGCTTTCTCCATATGC----TCTCTCTAATTGGAAACCT--CTATTTTGACACTTTGACTTCT-TTGACAG-----ATGTGTACGTGTCACTTACTATTGAGG---ATCttcgaa---attag-aaaaaaaccacA----------------TGCGCTCTCAA------CACGTCCAGCATATTCGAAAATATATACC---AAAAAAGCTATGCATCTGAAATTTGTGAGACG---------GGATGAGCCTCATCTAAGTCTTGGCTCGGCAA--CGATGGAT----TGTAGATCATTGAC--ATGTACACACAACACATACA--
i cb4.chrX              I 198 I 2254
s caeRem4.Crem_Contig0  1075233 281 -  4500979 ---TTGCAACAGCgactaga--aaaaaa---gaagtccTGTCTTCT---CCTGTCAAAGCTTTCT------------TCTCTCTAATTGGAAAcct-----ttttgacactttgactTCT-TTGACAG-----ATGTGTACGTGTC----ACCGTTGAGG---ATCttcgaa---attag-aaaaaa---aca----------------cgcGTTTGTAC------AACAT---ACACATTCGA----ATATACC----AAAAAGCCATGCATCTGAAATTTGTGAGACA--------CGGATGAGCCTCATCTAAATCTTGGCTCAG-AT--GGATGGAT----TGTAGATCAATAAC--A--TACACACAACACATGTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6044170 290 + 20921866 ---TTGCAACAGAAACGAGAGCAAGCAA---GAAG------ACTCCTTGCCTGTCAGA-CCTTCC---TATTCTCCCTCTTTCTAATTGGAAACC----TTTTTTGACACTTTGACTTAT-TTGACAC-----ATTGAAACGTGTC----ACCGTTGaga---atcttcaaa---attagaaaaaaaa--aca----------------cgcGGTTGTAC------AACAT---ACACATTCGA----ATATAGC---AAAAAAGCCATGCATCTGAAATTTGTGAGAC----------GGATGAGCCTCATCTAAATCTTGGCTTTC-TC--GGATGGAT----TGTAGATCCATAAA--A--CACAAACAACACAtata--
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2356776 286 +  4147112 ---TTGCAACAgcaacgaa---aaagaa---gaag------agtca-tGCCTGTCAGAGCTTTCC---TATTC--------TCTAAttggaaacct---ttttttgacacattgACTTCT-TTGACAG-----ATGTGTACGTGTC----ACCGTTGAGG---ATCTTCGAA---ATTAG-ACGAAAA--ACA----------------TGAGGTCGTAC------AACAT---ACACATTCAa----atataccaaaaaaaaagccatgcatctgaaatttgtgagaC----------GGATGAGCCTCATCTAAATCTTGGCTCGG-GCAGAGATGGAT----TGTAGATCAATAACATA--TACGAACAACATTAACA--
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  348257 321 +   375229 TTGTTGCAGTAGAAAATGAT--ACGACA---------------TCC-TGTCTGT-----CTTCGT------------CCACTCTAattagaaactt-----ttttgacaCTTTGACTTTTCCTGACAGGCCTCGTGAGAGCGTATCTAACACTTTTGCAGCACATCATGgaaaccattaa-aaaacaa--CCAGTAAATGTTTTTTGGTAGTGCTTACATACTTC-AAAAT---AAACATACAA----ATACACC---AAAAAAGCCATGAATCTGAAATTCGCGAGACGGGACGGGACGGATGAGCCGCATCTAAATCTTGGCTTGG-A---GGACGGATTGTATGTAGATCAATAAC--A--TGCAAAACATATGAATGCA
i caeJap4.Scaffold17084 C 0 I 2

a score=-103.000000
s ce10.chrX             4083172 6 + 17718866 TTTGAA
s caeRem4.Crem_Contig0  1075514 3 -  4500979 ---GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6044462 2 + 20921866 ----aa
i caeSp111.Scaffold630  I 2 I 453
s caePb3.Scfld02_0      2357064 2 +  4147112 ----GG
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold17084  348580 6 +   375229 TTTGAA
i caeJap4.Scaffold17084 I 2 I 208
e cb4.chrX              9186910 2254 + 21540570 I

a score=-165.000000
s ce10.chrX             4083178 23 + 17718866 TATAGTCTAG------TTTTAAAATAGGT
s caeRem4.Crem_Contig0  1075517 20 -  4500979 TAAAAGTCGAAATGG---------AAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2357068 29 +  4147112 taaaatttggaaaagattttaaaaaaagt
i caePb3.Scfld02_0      I 2 I 405
e caeJap4.Scaffold17084  348586 208 +   375229 I
e cb4.chrX              9186910 2254 + 21540570 I
e caeSp111.Scaffold630  6044464 453 + 20921866 I

a score=633.000000
s ce10.chrX             4083201 43 + 17718866 GAACATATCAGGATTTTAACAATTGAGAGGTTTAAAAATTTCG
s caeRem4.Crem_Contig0  1075537 42 -  4500979 GCACAagttaatgtttcaaaaa-caaacgaTTTAGATATGTTG
i caeRem4.Crem_Contig0  C 0 I 876
e caePb3.Scfld02_0      2357097 405 +  4147112 I
e caeJap4.Scaffold17084  348586 208 +   375229 I
e cb4.chrX              9186910 2254 + 21540570 I
e caeSp111.Scaffold630  6044464 453 + 20921866 I

a score=0.000000
s ce10.chrX             4083244 1077 + 17718866  
e caePb3.Scfld02_0      2357097  405 +  4147112 I
e caeJap4.Scaffold17084  348586  208 +   375229 I
e cb4.chrX              9186910 2254 + 21540570 I
e caeSp111.Scaffold630  6044464  453 + 20921866 I
e caeRem4.Crem_Contig0  1075579  876 -  4500979 I

a score=534.000000
s ce10.chrX             4084321 28 + 17718866 AAAAGAATAGCTGCAAAAATTTCTA--CTG
s caeRem4.Crem_Contig0  1076455 30 -  4500979 AAAACacaaactatgaaaatttcgaaatta
i caeRem4.Crem_Contig0  I 876 C 0
e caePb3.Scfld02_0      2357097 405 +  4147112 I
e caeJap4.Scaffold17084  348586 208 +   375229 I
e cb4.chrX              9186910 2254 + 21540570 I
e caeSp111.Scaffold630  6044464 453 + 20921866 I

a score=-2689.000000
s ce10.chrX             4084349 59 + 17718866 ------------------------------AAAATGAGAAACTGTATATATGATTATGAACTTGAAAAA--------AAATCTAACTTTCAACCTAG
s cb4.chrX              9189164 57 + 21540570 ------------------------------aaaagaagaaact---taGATATTTCTTCACTAGAACAAACCCAGACAGATATG-------AATGAA
i cb4.chrX              I 2254 C 0
s caeRem4.Crem_Contig0  1076485 89 -  4500979 aaaaaatttgcgTGGAAACAGTATGCATTCTAGAAATGAAACT---TTGAT-----TTCTATAGAAAAACTACGTTTCGGTATGATTTCCAACTGGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2357097 405 +  4147112 I
e caeJap4.Scaffold17084  348586 208 +   375229 I
e caeSp111.Scaffold630  6044464 453 + 20921866 I

a score=1402.000000
s ce10.chrX             4084408 7 + 17718866 CTAGGTG
s cb4.chrX              9189221 7 + 21540570 CTTCATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1076574 7 -  4500979 CTAGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2357502 7 +  4147112 CTAGATA
i caePb3.Scfld02_0      I 405 C 0
e caeJap4.Scaffold17084  348586 208 +   375229 I
e caeSp111.Scaffold630  6044464 453 + 20921866 I

a score=33712.000000
s ce10.chrX             4084415 110 + 17718866 GATGAAACATCACACCCGCTCACAGGTGGGAAAATCCCATTT-TAAATGAAATTCATCATATGAAACGTCTTCAATCTGGCGT----TT--------TTCTTGGATCCACGCCGGCTCCGATG
s cb4.chrX              9189228  87 + 21540570 TATT------------CTCTC-CAGGTGTGAAAATCCCATTCAAAAACGAGATTCATCATATGAAGCGCCTTCGGAA--------CACT--------CTCTTGAATCCATGCCGTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1076581 121 -  4500979 TATGTAACAACTCAAACTCTC-CAGGTGTGAAAAACccattt-aaaacaaaattcatcATATGAAGCGTCATCGAAGTGGCATCTCACTCTCTCCCACTCTTGGATCCATGCCGTCTTCATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6044917 102 + 20921866 GATGAAACAATTCAA--TCTC-CAGGTGTGAAAAGCccattt-caaacaaaattcaTCATATGAAACGTCGTGGAATCGGAAC--TTCT--------TCCTGAGATTCATGCGACT-------
i caeSp111.Scaffold630  I 453 C 0
s caePb3.Scfld02_0      2357509 103 +  4147112 TATGAAACATCTCAGTTTCCC-CAGGTGTGAAAA-CCCattt-aaaacaaaattcatCATATGAAATGTCTGAGGCCCGGCAT--TTCT--------CTCTAGGATCCATGCCGTT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  348586 208 +   375229 I

a score=-6334.000000
s ce10.chrX             4084525 73 + 17718866 C---CTTTAGCACCCTAG---GTGCACATCGTAAAAG--TATAACAAATCGG---------TTGGGAGAAGACCGAAGAAATCGGCGAGA
s cb4.chrX              9189315 78 + 21540570 ----CCGTACTTTAC-------GGTGCATTGTCGCAGAGTCTAACTGACcagatttttgtttctcaagaaga-tgaaaaaatgggcggag
i cb4.chrX              C 0 I 73
s caeRem4.Crem_Contig0  1076702 72 -  4500979 CTTTCAATACCCTTC--------GTGCATCGTTTGGGAGTATAATAAATCGG---------TTccaagaaga-caaaaaaatccGGGAAC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6045019 67 + 20921866 ----CCAAAGCTCTCTA-----AACGCATCgtaaaaa-gtataaaaaatCGG---------TTCTAAGAA----AATTGTGAGGGAAAAA
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2357612 69 +  4147112 ----TCCAAGTTTCCTC-----ATCCCATcgtaaaac--taaaaaaaatcgt---------ttctgagaaga-caaaagaaaacgaaaaa
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084  348794 55 +   375229 ---CCGTCAGCACCTCAACGTGGGTGCATCGTCGAAG--TATAACAAATCGG---------TGAAAAGA---------------------
i caeJap4.Scaffold17084 I 208 C 0

a score=11543.000000
s ce10.chrX             4084598 53 + 17718866 ATTTCGAAAAAGGGAAGCTCCGTCTGAG-------CCCTAT-ATGGACGACTAATGTGACG--------
s caeRem4.Crem_Contig0  1076775 59 -  4500979 GatttgaaaaagggaaattgcGACCGAATCAAGTGCCCTAT-TTAAA-GACTAATGTGACG--------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6045092 54 + 20921866 ATTTTGTAAATGAGAAGCTGTGACCGGG-----AACCTTAT-TCGGA-ATCAAATGTGACG--------
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2357690 53 +  4147112 ATTTCGTAAATGGGAAGCTGTGACCGAG------CCCCTAT-TCGGT-GTCTAATGTAACG--------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084  348849 60 +   375229 ---TTGAATGATGTGAGCCACGGCCAAA-----TGCCCTATATCGGA-AACTAATGGGAATAAAAAGCA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9189393 73 + 21540570 I

a score=3458.000000
s ce10.chrX             4084651 112 + 17718866 ATG---TTCTTCAT-----AGAGGATGGCGCCAAAAGCCGTTTTCATTTCTTTTCTTGCT--GTCTTTGAG---------------------GATGCAA------CGATAAATATAAAAAGAAATCAAATAAAGTCACTCA-ATGGTGTC
s cb4.chrX              9189466 105 + 21540570 ATG---TTCTCAATCGAAAGGAGGCTGGTACTGCCGG---TACTCATCTCcatttttgtg--gaaattgaG---------------------AGTGCAAAAAA--GGAGCCAAATGA-------------GAAGTCGTTTA-TTGGCGGC
i cb4.chrX              I 73 C 0
s caeRem4.Crem_Contig0  1076834 117 -  4500979 ------------ATCTCATCGAGGATGGCACCG--------ACTCAT-TCCTCTTTTGAGCTGTATTTGAGAAAG-----------GGATGAAGTGcaagaaaacgggaaaaaatgaaCGGAAATCGAATGAAGTCATTTA-TTAGAGCC
i caeRem4.Crem_Contig0  C 0 I 159
s caeSp111.Scaffold630  6045146 108 + 20921866 ATG---TTCTTTAT-----GGGGGATGGCACCGCCTA---GCCGGCT---------------GTATATGAGAAAG-----------GGATGAAGtgcaaaat---ggaa--aaatgaaaggaaatCAAATGAAGTCACTCATTTGGTGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2357743 121 +  4147112 ATG---TTCTTCAT-----AGAGGATGGCACCGCTGA--GGACGGGT---------------GTGTAtgagaaaaagatggaaaatggatgaagtgcaaaatg--ggaa--aaatgaaaggaaatcaaatgaagTCAGTCATTTGGTGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  348909 106 +   375229 ATGTTCTTCTTCAT----------------CCGACGAGAGTCTTCCAGTTGCCTTTTGAA--GAGAACGAAA--------------AGATGTAGTGGAAAAAGATGGAG---AATAAA--------AAATCGAGTTACTTA-TTGGTGGC
i caeJap4.Scaffold17084 C 0 C 0

a score=1144.000000
s ce10.chrX             4084763 2 + 17718866 CG
s cb4.chrX              9189571 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6045254 2 + 20921866 CG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2357864 2 +  4147112 CG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349015 2 +   375229 CG
i caeJap4.Scaffold17084 C 0 I 274
e caeRem4.Crem_Contig0  1076951 159 -  4500979 I

a score=613.000000
s ce10.chrX             4084765 2 + 17718866 GA
s cb4.chrX              9189573 2 + 21540570 GA
i cb4.chrX              C 0 I 175
s caeSp111.Scaffold630  6045256 2 + 20921866 AA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2357866 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349017 274 +   375229 I
e caeRem4.Crem_Contig0  1076951 159 -  4500979 I

a score=776.000000
s ce10.chrX             4084767 6 + 17718866 ACTAAG
s caeSp111.Scaffold630  6045258 6 + 20921866 AATGGG
i caeSp111.Scaffold630  C 0 I 243
s caePb3.Scfld02_0      2357868 6 +  4147112 AATGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349017 274 +   375229 I
e cb4.chrX              9189575 175 + 21540570 I
e caeRem4.Crem_Contig0  1076951 159 -  4500979 I

a score=91.000000
s ce10.chrX             4084773 1 + 17718866 T
s caePb3.Scfld02_0      2357874 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 355
e caeJap4.Scaffold17084  349017 274 +   375229 I
e cb4.chrX              9189575 175 + 21540570 I
e caeSp111.Scaffold630  6045264 243 + 20921866 I
e caeRem4.Crem_Contig0  1076951 159 -  4500979 I

a score=0.000000
s ce10.chrX             4084774 711 + 17718866  
e caePb3.Scfld02_0      2357875 355 +  4147112 I
e caeJap4.Scaffold17084  349017 274 +   375229 I
e cb4.chrX              9189575 175 + 21540570 I
e caeSp111.Scaffold630  6045264 243 + 20921866 I
e caeRem4.Crem_Contig0  1076951 159 -  4500979 I

a score=502.000000
s ce10.chrX             4085485 16 + 17718866 TTCTCCGAAAAAGTGA
s caeRem4.Crem_Contig0  1077110 16 -  4500979 TTATTCGAACAAGCTG
i caeRem4.Crem_Contig0  I 159 C 0
e caePb3.Scfld02_0      2357875 355 +  4147112 I
e caeJap4.Scaffold17084  349017 274 +   375229 I
e cb4.chrX              9189575 175 + 21540570 I
e caeSp111.Scaffold630  6045264 243 + 20921866 I

a score=-321.000000
s ce10.chrX             4085501 47 + 17718866 CTCCAAAAACGA--AAAAAAAAGAATGCGAGTGACCAACTATCTGAACC
s cb4.chrX              9189750 43 + 21540570 cttcaaaaagga--aaaaaaccg---acgaacaa-aaattattccaaaa
i cb4.chrX              I 175 C 0
s caeRem4.Crem_Contig0  1077126 37 -  4500979 Cttcgaaaaaaactagaaattcg---gtaaaaa---------cccaaac
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2357875 355 +  4147112 I
e caeJap4.Scaffold17084  349017 274 +   375229 I
e caeSp111.Scaffold630  6045264 243 + 20921866 I

a score=-501.000000
s ce10.chrX             4085548 10 + 17718866 -----CGGTAAGGTT
s cb4.chrX              9189793 15 + 21540570 cgggagagaggggtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077163 10 -  4500979 c-----aaaaaggtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045507 10 + 20921866 -----CAATATGatc
i caeSp111.Scaffold630  I 243 C 0
e caePb3.Scfld02_0      2357875 355 +  4147112 I
e caeJap4.Scaffold17084  349017 274 +   375229 I

a score=9106.000000
s ce10.chrX             4085558 17 + 17718866 AGATAGACACAAATC--AG
s cb4.chrX              9189808 19 + 21540570 caaaagaaacaaatcaaaG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077173 17 -  4500979 cgaaagaaacaaaTC--AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045517 17 + 20921866 caaaagaaacaaatc--ag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358230 17 +  4147112 aaagaaacacaaatC--AG
i caePb3.Scfld02_0      I 355 C 0
e caeJap4.Scaffold17084  349017 274 +   375229 I

a score=168192.000000
s ce10.chrX             4085575 324 + 17718866 TCAAACGAAAAACTGAC-----GAACGAAGTTATCGCCTTACACCCTTC----TCGACGTTAGTTCTGGCCTCGTTATAAGCTGTTTCCGGGGGGCTATCGTC--ACATG-----TGAG-GTT-AGCTGGTGTGTGGTTG--------------GTCTGGGTGTGTGTATG--------------CGCCCAATCATAATGATACAACCGC---GATGTCATAAGAATTCAAAACGAGCTTCTTCCTC---------------TGGTGGCCCGGTTGGTGCAGTTTAATGACCTAG---------CCAAGTGAATACATCCATT--TT----TTTGTTTTCCT--------------------ATTGTGCTATGGACTTTCTGAAAAAAGAAAAA-----AAAAGAATAGCAAGACAAAAAAGTGAAAA---------
s cb4.chrX              9189827 394 + 21540570 G---AGGAAAAACTGACATTCGGAACGAAGTTATCGTCTTACATCCCTCCCATACTCGGCCCAGT-GGACCTCGTTATGAGCCGTTTCCGGGG---TATCGTCTTGAAGG-----TTAGAGCG-AGTTGGTTTGTGGTTGGCGTATATGTGTATGcatatgtgtgtgtgtgtgtgtctgtgtctgtgCCCAATCATAATGATACAACCGCGAGGATGTCATAAGAATTCAAAACGAGCTTCTTCCTCAGGGTCGAGGGATGGTGGCCACCAGTTTGGTTCAGTTTAATGACCTAG---------GCAAATGAATAAATGTTTtgagt----ttggttttttttgtgtgtcgATGTTACGTAGCATATGTGAAGGACTTTTCAACAGGACGAGAA----GCGAAAA----CTTGGGTCGAAAgactgaa---------
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0  1077190 340 -  4500979 C---ATTGAAAACTGGCATTCGGAACGAAGTTATCGTCTTTCATCCACC----ACCCCGTCAATTCTGGCCTCGTTATGAGCAGTTTCCGGGG---TATCGTCTCGTATG-----TGAG-GTT-GGCTGGTTTGTGGTTG--------------GTCTATGTGTGTGTGAGTGAGccc-------cccccAATCATAATGATACAACCGCGAGGATGTCATAAGAATTCAAAACGAGCTTCTTCCTCC--------------CGTCGACCGGTTTGATGCAGTTTAATGACCTAG---------GAAAATGAATGcatgttttgagt----tttgttttttt------------ttgtgttgcgTATGCGCAggactttcaaaaaagaaagaaa-------aaaa----catcacaaaaaagacacaa---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045534 319 + 20921866 C----AAGAAAACTGACAATCGGAACGAAGTTATCGTCTTTCACCCC------ACGCCGTCAGTTCTTGCCTCGTTATGAGCAGTTTCCGGGG---TATCGTC--GCATGGAAAAGGGG-GTGAGGTTGGTTTGTGGTTG--------------GTCTATGTGTCTGTG----------------TGCCCAATCATAATGATACAACCGCGAGGATGTCAtaagaattcaaaacgagCTTCTTCCTC---------------TGT-----CGGGTGGTGTAGTTTAATGACCTAG---------GCAAATGAATACatgttttgagt----tttgtttttt---------------------tgtgtgtgccggacttttcaaaaaaaagaatg-----aaaata----cagcacaaaaacgaaaaaa---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358247 321 +  4147112 T---GGACAAAGTTGCTATTTGGAACGAAGTTATCGTCTTTCATATT------CTCCCGTCAGTTCTTGCCTCGTTATGAGCAGTTTCCGGGG---TATCGTC--GTATG-----TGAG-GTT-GGTTGGTTTGTGGTTG--------------gtctatgtgtgtgtg----------------tgcccaATCATAATGATACAACCGCGAGGATGTCATAAGAATTCAAAACGAGCTTCTTCCTC---------------TGTCGGCCCGGTTGGTGCAGTTTAATGACCTAG---------GCAAATGAATAcatgttttgagt----tttgtttttta-------------------gtgtgtttgacggactttttcaaaaagagaaaa-----agaaaa----catcacaaaaaaaaacgaa---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349291 298 +   375229 ------tcaaaaaagaaaaccagaACGAAGTTATCGTCCGTTAT-------------------------CCTCGTTATGAGCAGTTTCCGGCC------------GCATG----------GCT-GA----------------------------GCCTATG------------------------TGCCTAATCATAATGATACAACGGCGAGGATGCCATAAGAATTCAAAACGAGCTTCTTCCTT---------------T-----CCCAGTTGTTGCAGTTTAATGACCTAGCCTAGACAAGTGAATACATACATGttttttgttacatttattttttt---------ttggtagttttttttggtgCCTGACTTTCaaaaagcgacaagaactaaaaaaaa----caacaaaaggagactaaaataatgacaa
i caeJap4.Scaffold17084 I 274 I 30

a score=-4461.000000
s ce10.chrX             4085899 17 + 17718866 TGCCGCACATTTTTGTA------------------
s caeRem4.Crem_Contig0  1077530 27 -  4500979 -------ttttttggtagGATGATTGTGAGAAC-A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045853 24 + 20921866 cgcagtatttctttt-----------ctaacATGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358568 34 +  4147112 gacaACAATTTTTGTGAGGACCATGGCTAGAAC-A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349589 30 +   375229 I
e cb4.chrX              9190221 18 + 21540570 I

a score=3084.000000
s ce10.chrX             4085916 15 + 17718866 GGACCTCCAATG-------------------TGA
s cb4.chrX              9190239 33 + 21540570 ggacCTCCAAGGAAAAA-GCGAGAAAAGatggaa
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0  1077557 34 -  4500979 AGACCTCCAATGAAAAATGTGTAGTGGTAAGgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045877 26 + 20921866 AGACtaccaaagaaaaaagtggag--------aa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358602 33 +  4147112 AGACTaccaaagaaaaatgtgtagtggcaa-aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349589 30 +   375229 I

a score=18762.000000
s ce10.chrX             4085931  67 + 17718866 AGTTTTTC---TTCATTCATTTCTGATGGCTCATA----TTGATGATCGC------------A-----------------------------GTAAAATGGGGAGCATTTTAGGA
s cb4.chrX              9190272 114 + 21540570 agttttttttgttcattcatTTCTGATGGATCCTCAGGAGTGATGATGGGGCTATTGGTTctaggaaaaaataaaagatgaCGGataaaatggagaaaaaggaa-CATCTTTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077591  78 -  4500979 agtttttc---ttcattcatttctgATGGATCTTT----GTGATGATGATGCTATTGGTTCTA-----------------------------GAGAGATGCGAC-AATTTTAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045903  54 + 20921866 agtatttc---ttcattcatttctgatGGTTCCT----------------------------A-----------------------------GTGAGATGAGGC-CTTTTAAGAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358635  77 +  4147112 aagttttc---ttcattcatttctgaTGGTTTCTG----ATGATGGC-ACACTATTGGTTCCA-----------------------------GTGTGATGAGGC-AATTTTAGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349619  53 +   375229 TGTCTTTC---TTCATTCATTTCTGATG-----------GTGATGCTCGC------------A-----------------------------GAAA------AC-TATTTTAAGA
i caeJap4.Scaffold17084 I 30 I 209

a score=-1192.000000
s ce10.chrX             4085998 78 + 17718866 TGCT-----CA-TCTTGGCGAAACAGAATTTATGTTCCTGTTTACA-----ACAAAAACATTTTGTGTTCTAAATCAGAAATGGAAAAA----------
s cb4.chrX              9190386 80 + 21540570 Agtt--------ttccattgaa----aattcATGATTCTGTACACAACTATTCAATGTTCCatgtt---ccaaattt----tgaagaacaaaGAATGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077669 63 -  4500979 AGCTATTCTTACTTCAGGAAAG----AATTTATGTTCGTGTTTACA-----TCGAACATCTagttt---tcaaat------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6045957 74 + 20921866 TGCCATTCTCA-TCTTGACAAG----AATTTATGTTTCTGTTTACA-----CCGATCATTTGTCCGAAAACAAATCTG---TGAGAA------------
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      2358712 86 +  4147112 TGCCATTTTCG-TCTTGACAGG--AAAATTTATGTTCCTGTTTACA-----CCGATCAACAACTGTAGGCCAAATCTGGcatgataatcaaaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349672 209 +   375229 I

a score=-3069.000000
s ce10.chrX             4086076 11 + 17718866 TTGAAAGGTAA----
s cb4.chrX              9190466 14 + 21540570 -CTAAAAATATGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077732  8 -  4500979 -ctgaaagt------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2358798 11 +  4147112 ---aagaaaaggaa-
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17084  349672 209 +   375229 I
e caeSp111.Scaffold630  6046031 23 + 20921866 I

a score=679.000000
s ce10.chrX             4086087 29 + 17718866 AGCCTAAGTTTGTGAATATGGTAAAACAA
s cb4.chrX              9190480 25 + 21540570 AGT----AGtttcgaaaaagttaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077740 20 -  4500979 ---------ttcagaagatATTAAAGTAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2358809 30 +  4147112 I
e caeJap4.Scaffold17084  349672 209 +   375229 I
e caeSp111.Scaffold630  6046031 23 + 20921866 I

a score=772.000000
s ce10.chrX             4086116 18 + 17718866 -------AATGCAAAATTGATATTG
s caeRem4.Crem_Contig0  1077760 25 -  4500979 TTATATTAAAGGAAAATTAGTATTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2358809 30 +  4147112 I
e caeJap4.Scaffold17084  349672 209 +   375229 I
e cb4.chrX              9190505  0 + 21540570 C
e caeSp111.Scaffold630  6046031 23 + 20921866 I

a score=0.000000
s ce10.chrX             4086134 478 + 17718866 AAAACATTTTGTCAACGTCATCAATTCTGTGAGATTCCTGATAGCAAATTGACTGTAATTGTGAGCAAAGTCTACACTGAAAATGATGAGTTTTCAACACTCCTGTTAAATCTGTTGCGATTCGCGAAAAGTTTGAAAACTTCGCCGATTCACAAAAACTAATTTAACGTGAAAATCTTTTAAAATTTGAAGTGTGAAAAAGTTATATAAAAGATATTTTCATTTAAATATAAAAGATATTTTCATCCGCATTTAATATGATTTTTTTGAAAATTTGAACATCGACCGTCTACCAAAACAAAATACAGTGTCATAATTTTCCTTGAAAAAACGACaacactcagtaattgccactttttgactgtcaatgaaaattttttaaaaacttacttttgaaacgttttactatactaattggtcattttgtcgccagtttggcttcatttttgaaaatttccccctagcgctattccacctt
e caePb3.Scfld02_0      2358809  30 +  4147112 I
e caeJap4.Scaffold17084  349672 209 +   375229 I
e cb4.chrX              9190505   0 + 21540570 C
e caeSp111.Scaffold630  6046031  23 + 20921866 I
e caeRem4.Crem_Contig0  1077785   0 -  4500979 C

a score=94.000000
s ce10.chrX             4086612 29 + 17718866 taaATTTCAAAAAATTAGGTTACAAAAAC
s caePb3.Scfld02_0      2358839 26 +  4147112 TACACTTAATAACATT---TTaaaccaag
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17084  349672 209 +   375229 I
e cb4.chrX              9190505  0 + 21540570 C
e caeSp111.Scaffold630  6046031 23 + 20921866 I
e caeRem4.Crem_Contig0  1077785  0 -  4500979 C

a score=206.000000
s ce10.chrX             4086641 33 + 17718866 -AAAAACTAAGAAATTAAATAATAGAAATT--AGTA
s caeSp111.Scaffold630  6046054 30 + 20921866 AAAAACTCgggaactgaaaaaatcagaatt------
i caeSp111.Scaffold630  I 23 C 0
s caePb3.Scfld02_0      2358865 31 +  4147112 -aaaaattgaaa----aaaaaattccgattgtGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349672 209 +   375229 I
e cb4.chrX              9190505  0 + 21540570 C
e caeRem4.Crem_Contig0  1077785  0 -  4500979 C

a score=-707.000000
s ce10.chrX             4086674 11 + 17718866 CATTAGCCAGA
s caeRem4.Crem_Contig0  1077785 11 -  4500979 CACAGTttgga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6046084  6 + 20921866 -----atTTAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358896 11 +  4147112 GATAAATATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349672 209 +   375229 I
e cb4.chrX              9190505  0 + 21540570 C

a score=-3904.000000
s ce10.chrX             4086685 4 + 17718866 AAA-C--
s caeRem4.Crem_Contig0  1077796 4 -  4500979 aaat---
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold630  6046090 3 + 20921866 GAA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2358907 3 +  4147112 CAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349881 4 +   375229 -AA--TC
i caeJap4.Scaffold17084 I 209 C 0
e cb4.chrX              9190505 0 + 21540570 C

a score=151147.000000
s ce10.chrX             4086689 203 + 17718866 TAAAGGGTCATAAACCAAAACGTAAAACATTAGACG-----TTTAG------AGCAACTCCAGTAGGTGTGAACG----C-GAAAGATGA----TACGGCGCAGGCTACGGAAACAAAACTCGCCTCGTCTAGAG------CCCATTTGTCTGCGTTCATTTGCCAGCTCATATTCCA--TCTTAACTCGATTACGAAAACG-----------G-GAAATTCGATAACTTGTTCTTCGAAACA
s cb4.chrX              9190505 203 + 21540570 tagcGGTTCATGAATCAAAACGTAAAATGTACTGCGGGGTCTTCAG--------------TAGTAGGTGTGAACG----CAGAAAGATGA----TACGATG-AGCCCACGGAAACAAAACTCGGGG-GCCCACCGAGACGTCCCATTTGTCTGCGTTCAT-----AGCTCATATTCCATCTCAAAACTCGATTACGAAAACG-----------GCGAAATTCGATAACGTGTTTCTCGAAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1077817 202 -  4500979 caaAGGTTCATAAATCAAAACGTAAAAAGTAGCACG-----TTCAG------GGCAACTCCAGTAGGTGTGAACG----T-GAAAGATGA----TACGATG-AGCCCACGGAAACAAAACTCGGGGTGTCTAAAG------CCCATTTGTCTGCGTTCATTCGTCAGCTCATATTCCA--TCATAACTGAATTACGAAAACG-----------G-GAAATTTGATAACCTGTTCTCCGAAACA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold630  6046093 202 + 20921866 TGAATGTTCATGAATCAAAACGTCAAACAATATACG-----TTTCG------AGCAACTCCAGTAGGTGTGAACG----C-GAAAGATGA----TACGTAG-AGCCCACGGAAGCAAAACTCGGGGCGTCAAAAG------CCCATTTGTCTGCGTTCATTCGTCAGCTCATATTCCA--TCTTAACTCGATTACGAAAACG-----------G-GAAATTCGATAACTTGTTCTTCGAAACA
i caeSp111.Scaffold630  C 0 I 829
s caePb3.Scfld02_0      2358910 203 +  4147112 TAAGTGTTCATAAATCAAAACGTAAAACTCTACACG----TTTTCA------AGCAACTCCAGTAGGTGTGAACG----C-GAAAGATGA----TACGAAG-AGCCCACGGAAACAAAACTCGGGGCGTCTAAAA------CCCATTTGTCTGCGTTCATTCGCCAGCTCATATTCCA--TCTTAACTCGATTACGAAAACG-----------G-GAAATTCGATAACCTGTTCTCCGAAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349885 207 +   375229 GAGAGGTTCATAAATCAAAACGTAAAACGTTACACG-----TTTCGTTTCGACGCAACTCCAGTAGGTGTGAACGAACAC-GAAAGATGATCCCTGCGAAG----------AAACATAACTCGA--CTTTGAGAA------CCTA---GTCTGCCCACAATCGT-GGCTCATATTCCA--CTTTAACCCGATTATGAGAAGGTCGGATATTATG-TATATTCAATGACTTGTCCTTTt-----
i caeJap4.Scaffold17084 C 0 C 0

a score=-457.000000
s ce10.chrX             4086892 11 + 17718866 TCTTTACGACA
s cb4.chrX              9190708 11 + 21540570 TTgtaaaaaca
i cb4.chrX              C 0 I 1025
s caeRem4.Crem_Contig0  1078019  1 -  4500979 T----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2359113 11 +  4147112 TCGTCgctaca
i caePb3.Scfld02_0      C 0 I 856
s caeJap4.Scaffold17084  350092 11 +   375229 tctttaaaaca
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6046295 829 + 20921866 I

a score=106.000000
s ce10.chrX             4086903 6 + 17718866 AGGCAG
s caeJap4.Scaffold17084  350103 6 +   375229 aaaaag
i caeJap4.Scaffold17084 C 0 I 632
e caePb3.Scfld02_0      2359124 856 +  4147112 I
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I
e caeRem4.Crem_Contig0  1078020 0 -  4500979 C

a score=0.000000
s ce10.chrX             4086909 40 + 17718866 CAGAATACAGATTTATGATTTTGAAACTTAAAATATTGGA
e caePb3.Scfld02_0      2359124 856 +  4147112 I
e caeJap4.Scaffold17084  350109 632 +   375229 I
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I
e caeRem4.Crem_Contig0  1078020  0 -  4500979 C

a score=3798.000000
s ce10.chrX             4086949 744 + 17718866  
s caeRem4.Crem_Contig0  1078020 532 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 532
e caePb3.Scfld02_0      2359124 856 +  4147112 I
e caeJap4.Scaffold17084  350109 632 +   375229 I
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I

a score=0.000000
s ce10.chrX             4087693 945 + 17718866  
e caePb3.Scfld02_0      2359124 856 +  4147112 I
e caeJap4.Scaffold17084  350109 632 +   375229 I
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I
e caeRem4.Crem_Contig0  1078552 532 -  4500979 I

a score=350.000000
s ce10.chrX             4088638 33 + 17718866 TTAAATTTTTTGTGATCTACAAAAAGTCTGAAA
s caeJap4.Scaffold17084  350741 30 +   375229 TTACATTTCTTGCAACTTACAATA---CCCGTT
i caeJap4.Scaffold17084 I 632 C 0
e caePb3.Scfld02_0      2359124 856 +  4147112 I
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I
e caeRem4.Crem_Contig0  1078552 532 -  4500979 I

a score=-10.000000
s ce10.chrX             4088671 4 + 17718866 AAAA-
s caePb3.Scfld02_0      2359980 4 +  4147112 aaaa-
i caePb3.Scfld02_0      I 856 C 0
s caeJap4.Scaffold17084  350771 4 +   375229 -AAAC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9190719 1025 + 21540570 I
e caeSp111.Scaffold630  6046295 829 + 20921866 I
e caeRem4.Crem_Contig0  1078552 532 -  4500979 I

a score=-918.000000
s ce10.chrX             4088675 20 + 17718866 GTATCCGGAACGTAACATTT-----
s caeSp111.Scaffold630  6047124 18 + 20921866 gtaTCC--CAtaagatattt-----
i caeSp111.Scaffold630  I 829 I 10
s caePb3.Scfld02_0      2359984 17 +  4147112 -atttc--aatgagacattt-----
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17084  350775 20 +   375229 GTGTCT-----GAGACGTGTGACTA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9190719 1025 + 21540570 I
e caeRem4.Crem_Contig0  1078552 532 -  4500979 I

a score=-1266.000000
s ce10.chrX             4088695 27 + 17718866 ----TGATA-AAAAAGAAAAATGAGGAGGG--------GC
s cb4.chrX              9191744 33 + 21540570 ----TAACA-GAGCACAAAGGTTGAAttgagagaaaga--
i cb4.chrX              I 1025 C 0
s caeSp111.Scaffold630  6047152 26 + 20921866 ----tgacaTGAGAACAGAGGTtacgagaa----------
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2360014 26 +  4147112 ----tgacatgAGAACAAAGGTTGAGGTGA----------
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17084  350795 35 +   375229 GTGTAGAAA-AAGAGCGAAAGTAAAAGGGAAGGAGA----
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1078552 532 -  4500979 I

a score=442195.000000
s ce10.chrX             4088722 853 + 17718866  
s cb4.chrX              9191777 818 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1079084 806 -  4500979  
i caeRem4.Crem_Contig0  I 532 C 0
s caeSp111.Scaffold630  6047178 829 + 20921866  
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2360040 789 +  4147112  
i caePb3.Scfld02_0      C 0 I 535
s caeJap4.Scaffold17084  350830 793 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-3680.000000
s ce10.chrX             4089575  9 + 17718866 -TTATTAAAT--------
s cb4.chrX              9192595  5 + 21540570 -----aattt--------
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1079890  5 -  4500979 -----TAAAT--------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  6048009  9 + 20921866 -TTATGAAAT--------
i caeSp111.Scaffold630  I 2 I 340
s caeJap4.Scaffold17084  351623 18 +   375229 aaaacaaaatgtgcaatt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2360829 535 +  4147112 I

a score=-4091.000000
s ce10.chrX             4089584 31 + 17718866 TTAGAGCAGGGCTACAGCAATTTGAAGCGAA
s cb4.chrX              9192604 15 + 21540570 TT--------GTT--------TTGTAATAAT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1079899 26 -  4500979 TTTAAGAAGAGTTAAA-----TTGAatgaaa
i caeRem4.Crem_Contig0  I 4 I 316
s caeJap4.Scaffold17084  351641 29 +   375229 ttaaaaaactggaaaagaaaaatacagta--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2360829 535 +  4147112 I
e caeSp111.Scaffold630  6048018 340 + 20921866 I

a score=-1809.000000
s ce10.chrX             4089615 74 + 17718866 CATATTTTCAAAGACGAATTTAGAT-----TCAAAAATTCTGGTTCAACTGAACGTAGCGA---------GACGGTTCAAATATTTGA
s cb4.chrX              9192619 40 + 21540570 --------AAAAGATGAAC----------------------GGTTTgtttggaatttgaga-----------------aaatatt-ga
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  351670 86 +   375229 CACATCTTTCAAGAGGACTTTagatttttcttaaaaatggGATTTTATGAGAAAAAAGGAACGAAACGATGACGGA--AAATGTTTGA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2360829 535 +  4147112 I
e caeSp111.Scaffold630  6048018 340 + 20921866 I
e caeRem4.Crem_Contig0  1079925 316 -  4500979 I

a score=-6282.000000
s ce10.chrX             4089689 950 + 17718866  
s cb4.chrX              9192659 623 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2360829 535 +  4147112 I
e caeJap4.Scaffold17084  351756   0 +   375229 C
e caeSp111.Scaffold630  6048018 340 + 20921866 I
e caeRem4.Crem_Contig0  1079925 316 -  4500979 I

a score=1352.000000
s ce10.chrX             4090639 18 + 17718866 ------CAACTT-TGATCGTGTGTT
s cb4.chrX              9193282 24 + 21540570 tgatttcaaattctgat-gcttatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080241 17 -  4500979 ------CAAATT-TGAT-GTGTGTT
i caeRem4.Crem_Contig0  I 316 C 0
e caePb3.Scfld02_0      2360829 535 +  4147112 I
e caeJap4.Scaffold17084  351756  0 +   375229 C
e caeSp111.Scaffold630  6048018 340 + 20921866 I

a score=-3417.000000
s ce10.chrX             4090657 23 + 17718866 TTTTATTTTTATTTTCCGA-AT---AT
s cb4.chrX              9193306  8 + 21540570 -------------tttaga-aa-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080258  9 -  4500979 -------------TTCGGATAG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2361364 24 +  4147112 TTTGATGCATGTTTTCGGG-AAGac--
i caePb3.Scfld02_0      I 535 C 0
e caeJap4.Scaffold17084  351756  0 +   375229 C
e caeSp111.Scaffold630  6048018 340 + 20921866 I

a score=13680.000000
s ce10.chrX             4090680 34 + 17718866 AAAAACGAAC---AATGTAAAATCTGAAGGATGGTGA
s cb4.chrX              9193314 36 + 21540570 aaaagcgaacaaaaaagta-aagaaaaaCTATCGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080267 35 -  4500979 AAAAACGAAC--AAAAGTAGAAGTCTGACGATGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6048358 34 + 20921866 aaaaacgaac---aaaGTCGAAGCCTGGAGATGGTGA
i caeSp111.Scaffold630  I 340 C 0
s caePb3.Scfld02_0      2361388 35 +  4147112 aaaaacgaac--aaaagTAAAAGTCTGGGCATGGTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  351756  0 +   375229 C

a score=86727.000000
s ce10.chrX             4090714 111 + 17718866 TTGTGTCGTGCACGTCAACTCATCCGTCAACACGAAACGA----CGACTCA-----ATATGCTATTCTTCA-TTTT------GTGAAACATATGCAAA-------------AAAGGAG------GGAAAGATTCAC-TTTTCT--AC--GA
s cb4.chrX              9193350 132 + 21540570 TTGTGTCGCCCACGTCAACTTATCCGTCAACACACGAGAAGCCGGGACTCA-----ATACGCCATTCTTCA-TTTT------GTGAAACATATGCAAAAATGGGGTggtagaaaaagg------aaaaagattCAC-TTTACTCATCGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080302 113 -  4500979 TTGTGTCCTCCACGTCAACTCATCCGTCAACACAAGAAGA----GAACTCA-----ATTCGCCATTCTTCA-TTTT------GTGAAACAtatgcaaa-------------aagagaa------aaaaggattcaT-TTTACTCTAC--GA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6048392 117 + 20921866 TTGTGTCCTCCACGTCAACTCATCCGTCAACACAAGAAGA----GGACTCA-----ATACgccattcttca-tttt------gtgaAACATATGCAAA-------------AATGgggggaagaaaaaggattcaC-TTTACT--AC--GA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2361423 113 +  4147112 TTGTGTCCTCCACGTCAACTCATCCGTCAACACGAGAAGA----GGACTCA-----ATACgctattcttcattttt------gtgaaacatatgcaaa-------------aaaggag------aaaaagattcACTTTTACT--AC--GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  351756 117 +   375229 TTGTGTC---CACGTCAACTCGCCCGTCAACACAAAAGAGAAAGGAACTCATCTCTTTATTctattcttca-tttttgtgAAGCGAAACATATCCACC-------------A------------AAAAGGATTCAT-TTTTCG--CC--GA
i caeJap4.Scaffold17084 C 0 I 773

a score=54751.000000
s ce10.chrX             4090825 269 + 17718866 TCAAACGCACT-----ACCCACTACCAC---CACGCCATACCCTTCCAGGATGGGGG---------GCTCTTGAAAC-ACAATAATGAGAG--AAATGTAGTGAACGGATTATAATTTG--GACAA---TGCAGTTTT-TCCGGGTTTTTTTGTTTTGTTATTTTTTTTTCATTTTGTATGTCCAATGCACATCAATATTGTTTTTGACTTGA-AAAAAAAA-CCAACGAAA-TGTTTGTGAAGGCTAA---CACCATTAGAAATTC---TGGGAGAAAAATGGGAGCTAGAAGTTGAGTTGAA-
s cb4.chrX              9193482 239 + 21540570 TCTGACGTACTTTTACATACTCTCTCTCATTCACA-CATGGTC--------------------------CTTGAAACAACAATAAGGAAGGAAAAGGGTAGAGAACGGATCATAA-AAGGCAgcagttttaaattttttttcgtgttcTTCCGTTGCTTCA-----------------------ATGGTAAAATATTATtgttttggtttcaa-aaaatggatgcgccgcatttttttgtcaaagcTAGaacaaaagttaaaaattcagggaagaag------------aaaaagcgaGTTCG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080415 233 -  4500979 TCTAACGTACT-----------TCTCTC---CACG-CATGGTC--------CAGTCCAC-------CCTCTTGAAAC-ACAATAAGGAAGAGAACAAGTAAAGAACGGATCATAA-ATG--AGCAA---CACGTTTTTGACCgtgttcttttgttttttcatgcGCTTCT--------ATGT--ATTGCACGTTATTATTGTTCTGGTTTTAAGAAAAGAAATGCA-------TGTTTGTCAACGCTGA---CTGAGTTAAAAATTC---TAAGAAG------------CAGTGGCGAGTTAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6048509 236 + 20921866 TCAAACGCACT-----------TCTGAC---CACG-CATAGCCTCACACGTCGGTCCCCCCGCCATCCTCTTGAAAC-ACAATAAGGAAGAGTAAAAGTAATGAACGGATCACAA-ATG--AGcag---ccttttttt--ctatgttcTATTGTTGTCAGATGCGCTTCT--------------ATTGCACGTTATTATTGTTCTGGTTTTAG-AAAAGTCG-ACA-------TGTTTGTCAACGCTGA---AAGAGTTAAAAATTC---TGTG---------------CGAAGACGAGTTGGA-
i caeSp111.Scaffold630  C 0 I 104
s caePb3.Scfld02_0      2361536 229 +  4147112 TCAGACGCACT-----------TCTAAC---CACG-CATAGCCTCACACGTCGGTCCTTC------CCTCTTGAAAC-ACAATAAGGAAGAGTAAAAGTAAAGAACGGATCATAA-ATG--AGCGA---cacgttttt-----tgttcttttgttaTTACATGCGTTTCT--------------ATTGCACGTTATTATTGTTTTGGTTTAAG-AAAAGGCG-GCA-------TGTTTGGCAACGCTAA---CCGAgttaaaaattc---tgagaa-------------agaaGACGAGTTCGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  351873 773 +   375229 I

a score=-4129.000000
s ce10.chrX             4091094 92 + 17718866 GCATTGTAGTAGTACGTTTATCAAT------TTCTTGGGTTT------TGGGACGGTGCAAAATATCCAAAAAACTTTTTGA-TTCAATTCAAAAAAAACTAATT
s cb4.chrX              9193721 76 + 21540570 ---------------TTCTTCCCAGTTgagattct--gtttttttttctggaaaagagttaag---ccataaaaat-------ttttgtttttag--tacTAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080648 68 -  4500979 --------------AGCTTTTCCAG------TTCT--GGGTT----------GCAGAGCTGGG---ctataaaatttcagagatttcttcTGAAG--CATTTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2361765 79 +  4147112 ACGCTG-AGTAAgagttttttctag------ttct--gGTTC-----------GAAAGCAGGa---ctataaaatttttg---ttcgattttaaGGAAACTGATT
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold17084  351873 773 +   375229 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I

a score=-1323.000000
s ce10.chrX             4091186 35 + 17718866 TAATTGAGTTAACGCTAATATTATGTCGAGAAATT
s cb4.chrX              9193797 24 + 21540570 TACAAAAACCA----------CGTTTC-AGAAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080716 18 -  4500979 AGTTAAAGTCG-----------------AGAAACT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2361844 39 +  4147112 I
e caeJap4.Scaffold17084  351873 773 +   375229 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I

a score=-1574.000000
s ce10.chrX             4091221 138 + 17718866 TCTCGAAAATTGCCAAACATAATAATTTTAACTCTAA-TGCGAAAATTAACTGAAAACTATTTGATAAAACGTTTTCCAAATAAATAAAAACGGTGTTATCATGATACTAATAGTAAGTCAGTTTTTCATCAAATGAAA
s cb4.chrX              9193821  84 + 21540570 TCTC---cattagaaaaaatctgaattaagtttttaagtgaaaaaat-------ggactACCTGGT----CGT-----------ATAATAGCGGT------------CCAATA------------TTTATTAG------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2361844  39 +  4147112 I
e caeJap4.Scaffold17084  351873 773 +   375229 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I
e caeRem4.Crem_Contig0  1080734   0 -  4500979 C

a score=-8628.000000
s ce10.chrX             4091359 159 + 17718866 GATTTTAAATTATTTCACAGCTGACCGTACTCCACCTTTAAAACAGGAAAAAAAATGAGTTATTTTCTAAAAA----TTGTCAATTAATAAAATAATCTATGACAAAAATATAAGTGTTCTTTGTTTTTTTTTTTTTCAATTTTTCAACAAAAAAGTTCAATA
s cb4.chrX              9193905  81 + 21540570 TAATTTA--------------CAGCTTTCC-----------------AATGGAAATTTGTCATTTGAGAGGAGCGCGCtgttatcttct----------------------------------------tcttttttctacttctc-----------tcatta
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1080734  84 -  4500979 GAGTTTATCTTGT-------CTAACCGtac-----------------agtaaaaaaatttacCTGGCCAGTAATTAGTTAGCAAATGAT-----------TGAAGGAAA--------------------TATAGTTGCT------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2361844  39 +  4147112 I
e caeJap4.Scaffold17084  351873 773 +   375229 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I

a score=-627.000000
s ce10.chrX             4091518 39 + 17718866 AAAACCGTTTACAAAAATTACATTCTACTCaaaaataat
s caeRem4.Crem_Contig0  1080818 17 -  4500979 ---AGCGCTAATAAAGTTTG-------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2361844 39 +  4147112 I
e caeJap4.Scaffold17084  351873 773 +   375229 I
e cb4.chrX              9193986  1 + 21540570 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I

a score=0.000000
s ce10.chrX             4091557 19 + 17718866 aaactaaatcaattaaatt
e caePb3.Scfld02_0      2361844 39 +  4147112 I
e caeJap4.Scaffold17084  351873 773 +   375229 I
e cb4.chrX              9193986  1 + 21540570 I
e caeSp111.Scaffold630  6048745 104 + 20921866 I
e caeRem4.Crem_Contig0  1080835  0 -  4500979 C

a score=-2456.000000
s ce10.chrX             4091576 79 + 17718866 aaatattaCCTGGCAAAAACT---GGCGAAATCGGAAGATCAAATAGTTAAAGTTGTAATACTAA--------ATACATTTTCACTTGCG-----
s caeRem4.Crem_Contig0  1080835 15 -  4500979 --------------------------------------------------------------------------------Gtcattcgaaaaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6048849 94 + 20921866 aGAGATTACCTGGCttaatatttatttgttATTCAAAGATCAAATAGTTGATACTCCAGTATTAACAGGAATACAATTTCgccatttgaaaaag-
i caeSp111.Scaffold630  I 104 C 0
s caePb3.Scfld02_0      2361883 93 +  4147112 aaaagttacctgGCAgagtagtt-tgagttttttgcaGATCAGATAGTTTGGACTCCAGTGCTAACAGAAATGAAATGCtgtcatttgaaaaag-
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17084  351873 773 +   375229 I
e cb4.chrX              9193986  1 + 21540570 I

a score=2775.000000
s ce10.chrX             4091655 6 + 17718866 GTTTAT
s caeRem4.Crem_Contig0  1080850 6 -  4500979 ttttat
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  6048943 6 + 20921866 tttcat
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2361976 6 +  4147112 ttttat
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  352646 6 +   375229 GCCTAT
i caeJap4.Scaffold17084 I 773 C 0
e cb4.chrX              9193986 1 + 21540570 I

a score=60889.000000
s ce10.chrX             4091661 170 + 17718866 CTTCTTTTCCAGGAATTGCCAGAGTTTTCAGAGAATAAAATTCCACTTGA--TATTTT-AGGCCATCAGCTATTCT-GGCGCAT---TGACAA-ATTTGAAATGCACGCTTCGCAAT-----------TGGTGCCTATC-TTTTTAGAACT-TGTttattattattct---cttcatcattatgatgatgacta
s cb4.chrX              9193987 144 + 21540570 tttttttctca------acattagttttcagaat---------taatcaa--aaattc-agatcatCATCTATTCT-GGCgcat---cgaaaa-ttttaaaatgcacG-----CAAT-----------TGGTGCCTATCATTTTTAAGAGTATGTTTATTATGATTAT---TGTGTGC--------TCTTCTTA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1080863 130 -  4500979 tttctttttcacaaattacgctagttttcagaaa---------tactcaA--TAATTC-CGCCCATCAGCTATTCT-GGCGCAT---CGGAAA-CTTAAAAATGCACG-----CAAT-----------TGGTGCCtatcatttttaaaact-tgtttatta------------------------------tta
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  6048951 140 + 20921866 tttctctttcacaAATTAcgttagttttcagaaa---------tactaca--taattcaaaatcatcagCTATTCT-GGCGCAT---CGGAGG-TTTAAAAATGCACGGATCTCAAT-----------TGGTGcctatcttttttcaaact-tgtttattat--------------------------attgca
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2361984 141 +  4147112 tctctttttcgcAAATTACTCTCGTTTTCAGAAA---------TACTACA--TAATTC-AGGTCATCAGCTATTCT-GGCGCAT---CGAAAGCTTTAAAAATGCACGGATCGCAAT-----------TGGTGCCTATCTTTTTT-AAACT-TGTttattat------------------------tattcgca
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  352652 179 +   375229 CCTCTCATTCGAAAATTACGCTCATTTTCAGAGA---------TACTACATTTGTTTC-AAGACATTAAAAATTCTGGGCGCATCGCCGAAGA-ATTAAATATGCGCAATTCTCAATACTCACTCAAATAGTGTCGTTTTTTCCT---ATC-TGTTTGTTATTATGTTCTACTTGTTTTGTGTAATGATGGAAA
i caeJap4.Scaffold17084 C 0 I 89

a score=10538.000000
s ce10.chrX             4091831 105 + 17718866 ctactattattattattTG--CTGCAACTTGCTCTCCGTTTTTGATCCGTGGGAAATTCTCAA-------AGTAGAACAAGAAAAAA-------CAAGACAGGACCAGAAA--------AAAATAATG--C
s cb4.chrX              9194131 111 + 21540570 TTACTACCATTATTGTTAT--GTGCATATTG-----------TTTGGTGGGAAAATATTCGGGAAAAACCGACAGACAAAATGAGAA---TGTGGGATAAGacattggaaa----aaatggaaccgCGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1080993 123 -  4500979 ttctcattattattattat--gtgCAACTTGTTCTCT----CTTTTGTGTGggaatattacaaaaaaagaaacagacaagagaagaaaagaacgagatgagaaatgaaaaaattgaaatggaaccgtg--a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6049091 109 + 20921866 ttattatttttattatttt--gtgCAATTTGTTCTCA-----TCATGTGTgggaatttcagag-aaaagaaacagacaaacagaaaa---tgagcgcaaaaaaacgagaat--------agaaacgcg---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362125 110 +  4147112 ttattatttctattattatGAGTAAAACTAGTTCACA-----TCATGTGTGggaatttcaatg---aagaaaCAGACTACCaaaaaa--gcaagcgagaaaaaatggaata--------agaaacgca---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  352831  89 +   375229 I

a score=8686.000000
s ce10.chrX             4091936  94 + 17718866 AAAAACAGGATTTGAAGATGCGAAAATGGGGAAAA-AAATGATTGT-ACACGGGA--GAAGGAAGAA-------------CATATGAAAAAAAAGAAAAGAAGCGAA---CAAG-
s cb4.chrX              9194242  74 + 21540570 AAACACAGAATTTGAAcgtgagaaaatgagaaaaatgga--------aca--------------------------------gGGCCAAAATTAGGATTATGATGGGACCCTCC-
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1081116  78 -  4500979 aaaaacaggatttgaaaatgcgaaaatgagaaaaatggatgattgt-aca--------------------------------cgggagaaaaaaggaagaaaaagag---cacc-
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold630  6049200  95 + 20921866 aaaaataggatttgaagatgggaaaatgagaagaatacATGATCGTAAccagaaa---acgaaaaaa-------------gaccACCAAAATTAAGGGAAATGGATT---TGGT-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362235  86 +  4147112 aaaaacaggatttgaagatgcgaaaatgagaaaaatacaaGATTGT-ACAAGGGA---ACG---------------------CCGCAAAAATTAGGGGGAAAGGAGG---CCCG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  352920 107 +   375229 aaaaacaggaattt----ttggcacattggaaaaatgaacgaaaaa-ataagaaacgaacagcaaaatGTATTGTTTTGTGATACACAAAAGTAAGGAGAAGAAGCA---CGGAT
i caeJap4.Scaffold17084 I 89 C 0

a score=-7333.000000
s ce10.chrX             4092030 24 + 17718866 -------------GTTTGAAGAGGTCCTTTTTTCCAA
s cb4.chrX              9194330  2 + 21540570 -----------------gg------------------
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold630  6049295  9 + 20921866 -------------GTCAGACAA---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362321  9 +  4147112 -------------GTTAGAATA---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  353027 19 +   375229 ATATGAGATGGACTTCCGA------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1081194 31 -  4500979 I

a score=187955.000000
s ce10.chrX             4092054 184 + 17718866 ACTAGGAAGAATCAAAAGTGC-TCTCTCAGCACAGACCA-CACCAGTGACACCTTTGAAACCAAAATTGAGGACGACACCATTGTGGAAGATGGGGGGAGACCACGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCTCTCTGGTCCCTCTTATTTTGCAATCATCT
s cb4.chrX              9194332 180 + 21540570 aataaa---aatcaaaaatgcttTTC-TAGCATTCACGACCAGCAAGGACACCTTTGAAACCAAAATTGAGGACGACACCATTGTGGAAGAC--GTGCAGACCACGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCTCTCTGGACCCTCTTCTTTTTGAGGCTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081225 181 -  4500979 AATAAAGAGAATCAAAAGTGC-TTTC-TAGCAGAGACCA-CACCAGTGACACCTTTGAAACCAAAATTGAGGACGACATCATTGTGGAAGAC--GTGCAGACCACGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCTCTCTGGTCCCTCTCTATTCACTATCATCT
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold630  6049304 176 + 20921866 -----ATGAGATCAAAAGTAC-TTTC-CAGCACAGACCA-CATCAGTGACACCTTTGAAACCAAAATTGAGGACGACACCATTGTGGAAGAC--GTGCAGACCACGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCTCTCTGGTCCCTCCTCATTTTCAACCATCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362330 176 +  4147112 -----AAAGAATCAAAAGTGC-TTTC-CAGCACAGACCA-CATCAGTGACAcctttgaaaccaaaattgaGGACGACACCATTGTGGAAGAC--GTGCAGACCACGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCTCTCTGGTCCCTCTCCAATTTCAATCATCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  353046 181 +   375229 AAGAAAAGGAATCAAAAGTGC-TTTT-TACGGAGAGCCACCGCTAGTGACACCTTTGGAACCAAAATTGAGGACGACACTATTGT-GAAGAC--GGGCAGACCGCGATACAACAACATTTCATTACATTTGGATCGGTGACGCGGAATCAAGTTCCACTCTGGTCCCTCTCAATTTTGTATCATCT
i caeJap4.Scaffold17084 C 0 I 443

a score=25018.000000
s ce10.chrX             4092238  98 + 17718866 TCT---GCTGT-CCC-------------GAAC-AACTTCGGACACTTGTTTTGAACTGATTTCAAAATTCACA-CTTCTTATTACGAATCGCTGTACTTTTATTC------------TCTAGTCTTTCT
s cb4.chrX              9194512 103 + 21540570 TGATGGGACGG-GCCCTCCCTGGTGTCGGAAC-GACTTGGGACACTTGTTTTGaactgatttcaaatttcacacttCATCATGTACTTTGGGCGTCTATACTCCA------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081406  86 -  4500979 TAC---AATGG-GCC-------------GAAC-AACTTGGGACACTTGTTTTGgactgatttcaaaattcaca-ttCATCATTTCATTGGAATGTACTTTTGTTC------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6049480 109 + 20921866 CAC---TCTGGCCCC-------------GAACAAACTTAGGACACTTGTTTTGgactgatttgaaaattcaca-CTCATTATTACG---AAGTGTACTTTTGTCCACTCGCAAAGACACTAGTATTTTA
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2362506  88 +  4147112 TAC---TCTGG-CCC-------------GAAC-AACTTGGGACACTTGTTTTGgactgatttgaaaattcaca-ctCATTATTACG----ATTGTACTTTTGT------------------GTCTTCTT
i caePb3.Scfld02_0      C 0 I 48
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-4701.000000
s ce10.chrX             4092336 35 + 17718866 AGGGTCCGACTACTGCGAAATATAAAATTGAAGGG-----
s cb4.chrX              9194615 22 + 21540570 ---AAGAAAAAGCTACTA---GTAGtac------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081492 34 -  4500979 ---ATTTGCAAGCTACTA---GTATTATACTAGGGACAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6049590 28 + 20921866 ----ATTGACCATGACGA---AAAGAATTCGAGGG-----
i caeSp111.Scaffold630  I 1 C 0
e caePb3.Scfld02_0      2362594 48 +  4147112 I
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-27958.000000
s ce10.chrX             4092371 183 + 17718866 GTTCATCTATTTGGAAAAAAAATT-------------AAGAGAAGAGAA--------AAGACAAGC-CAT-CATAATTATCAAGGAGCTGTCAATTCCA----AAAAAAATTTCTAAAAATTTTAGTAGAAAAAACACACCGCTTTTAGGAACCCTGTTAACATTTAAAAAAATA------------------------------------------TTTTACGGCAGTGTGAGAGgaaatctccgattgcc
s cb4.chrX              9194637  81 + 21540570 ------aaatttggaaatga-----------------aaaagaaataataGTGAACAGGGTCTGTTCCATGTGAAA-----AACGACCACTCAATTACATCATAA------TTAT-----------------------------------------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081526  98 -  4500979 GTTCTAAAGCTTGTAAGGGAGGGCTCCGTTccttttcaaaagaaaaaac--------gactCAATTACAT-CATAA-----GGGGAGCTGTCAATTCCA----AA------TTCtgc-----------agaga-----------------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6049618 181 + 20921866 --GCTCAAATCtatcgaaa------------------aatag---gaaC--------GACTCAATTACAT-CATAATTATGTGGGAGCTGTCAATTCCA----AA------TACTAG--------GGCAGAAAAC------------ggagaat-tttt--tggtgagaCAAACA--AAAACCCTGTTTAGAGGAACAGCGCTAATAATACTGGAGCTTCTGTGAAA---TGAGAAGCAA-ATCCAGTTACC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362642 195 +  4147112 --GCTCATTTTGATGGAAG------------------ACTAGAGAGAAC--------GAGTCAATTACAT-CATAATTATCAAGGAGCTGTCAGTtcca----aa------ttccgaaaatttccgaaaaaaaaa------------acaaaatagatt--CGGCGAGACAAACAAGAAAACCCTGTTTAGAGGAACAGCGCTAGTATTACCAAAGCTTTTTTggaa---tgagctgaaa-atccaGTTACC
i caePb3.Scfld02_0      I 48 I 22
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-5943.000000
s ce10.chrX             4092554 33 + 17718866 aaaaattttcagattcggtaatttt------caaa------tttt
s cb4.chrX              9194718 25 + 21540570 --------CTGGAAGCTGTCATTCC------Caaa------tttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081624 45 -  4500979 aaaaaacagaggaTTTTGGCAGGCCAACGCACAAAACCTTGTTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6049799 11 + 20921866 --------------CTTGACTTTCA--------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2362837 22 +  4147112 I
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-46038.000000
s ce10.chrX             4092587 224 + 17718866 tgaaaaCACTTGGAAATTTGTAAATGAAGAATTAAA-ATTTTATAGAGCAAAAAGCCATATTTCATCAAAAAACTTCAAAACTTTAATGAAAAGCATTTACTACAGTAAACATTAGTTTTTTGCTTTTTTTAA------AGTTTTATATTATTTGTAAAATGTTTAAACTGG-ATGAATGCCGGAAGATTCATCAAAAATAAA--TTATCAAAAA-----TACTGAAACTTGGCAAAAA-
s cb4.chrX              9194743 149 + 21540570 ----------aggaaatgcgaaaaacaaagagaaagaatttttcgaaaagaaaa------------caaaaccc--------------------------------------CTGGTTTGGT--CTGGGAACG------GCTTTAATATTATTGA---AATTCTCCCGCTAT-ATCAGTTTAATAAGAA---TTCAAGATAAAAGGCATCGCCAA----------------GGCTGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081669 157 -  4500979 ----------GAGGAACGGCACTAATAATACTAAAG-CTTTTGTGGAATGAAGA------------CAAAATCC------------------------------AGTTAACATTGACTTTCT--TTGGCTCAGAAACAGAATTTGAACATATTTC---ATTCTTGgcactaa-aaaaaataaagaag-----tcTAAAACAAC--TTACCGAAAT----------------GGCAGAAA-
i caeRem4.Crem_Contig0  C 0 I 78
s caeSp111.Scaffold630  6049810  85 + 20921866 ----------------Ttggaatagaaaacaaagag-agcAAATGG------------------------------------------------------------------------------------TAG----------TGAGAATGTTTC-----------CAATGAGAAAAAGCT---ATGGTT--TCTTGAAGGAT--TC-TTGAAAG-------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362859 130 +  4147112 ----------------------cagaaaaataagag-aattaGTGGGATTGAAA------------TATTGTAC-------------------------------------ATTAAAT---------GTTcag----------tgaaaatgtttc-----tgCAAGCAATCA-AGATGGCTCAGACGGAC--TGTAAAACGCT--TCAccgaaaaacagttttagtCATTT---------
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-12854.000000
s ce10.chrX             4092811 101 + 17718866 ATGTATAATGTCGCCCACGCCTGTCGTCAAGGTTAAACTCTCAAATTTTCGAA-AATATGCCTAGAAA-TTGCCGAAATTT------------CCAGAATTTAGTAATTTGGATA
s cb4.chrX              9194892  37 + 21540570 ------------------------------------------------------AATGT----------CAACCGTATTACCAATACATgcaatctga-------------gaa-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6049895  50 + 20921866 -TGTAT--------------------------------ACTCAAA---------AATATCTTT------CTACCggaattt------------tccgaattt-aTGA----GATG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2362989  83 +  4147112 TTGGAT-------------------------------CGCTCAAACCAACGGTCAATAGCTGTGATTGGCTATCAAAATGCTTAgttaaaaaatctgaactt-gTAATTATGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  353227 443 +   375229 I
e caeRem4.Crem_Contig0  1081826  78 -  4500979 I

a score=-28745.000000
s ce10.chrX             4092912 101 + 17718866 -----------CTTTAAGCAATTGTAGAATTTGCCAAATGGTCCTTTTTTAGAATTTATGTTGAGCTGCAAATAGGCAATGCTAATTGAGAATATACGGTAGCTAAAATTGA----
s cb4.chrX              9194929  60 + 21540570 ---------------aaaaaattatagact--------CTAGCAAGATT-------------AAATTCAAG-----------Tggactggagacctctac-----aaaTTTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081904  35 -  4500979 -----------CTTCAAGAAA------------------TAGCATTTTT-------------AAATTGCA-----------------------------------AAAATCG----
i caeRem4.Crem_Contig0  I 78 C 0
s caeSp111.Scaffold630  6049945  74 + 20921866 TTTCTAGAT-TCCTGAATAAC------------------CATCTTTTTCTACATGTTCAACAAAGTTTCT----------------TTAGAATCCGCA-------GGATTTATCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363072  56 +  4147112 CTGATTGATATCTTGGATAAC------------------AGGCCTCGCC--------------AGTCACA----------------TCGTAGCTC------------AATCATTGA
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-7347.000000
s ce10.chrX             4093013 43 + 17718866 TCTACAACAATTAATGCTTTAAAAGATCAGTTTA----GCATTCATG----
s cb4.chrX              9194989 23 + 21540570 ----------------------TAAACCAAATAA----AGCTTAAAATG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081939 26 -  4500979 ----------------------AGAACTAGTTCATCTTACTTTTATAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6050019 29 + 20921866 -----------------ACCGAAacactaaaaaa----aaatcaacaa-tg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2363128 41 +  4147112 I
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=-3906.000000
s ce10.chrX             4093056 54 + 17718866 CTCCAGTTTTAAAAAACATAGGTTAAAGGGAA-----------------------CTCAAGACTTTAGTCATTGGCC
s cb4.chrX              9195012 28 + 21540570 -------------------------------------------------CCGTTTTTCTAGATATTAATCACTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1081965 28 -  4500979 -------------------------------------------------CCGTTTTCCAAGACGTTAGTGACTAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6050048 35 + 20921866 -----------------------CAAAAACAA-------------------TTACTCAAAGGTGTTAGTCACTGAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363169 67 +  4147112 ctcc-------aaaaattt---tcaaaaaaagctgaattcAGAGAGTCGTTTTCTTTATAGGTGTTAGTCACCGGAC
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17084  353227 443 +   375229 I

a score=105775.000000
s ce10.chrX             4093110 173 + 17718866 AGTAGTTCTGAACAACTGCAAAAAACAAT--GCA---CGGATTAATTAATTTT--TTCGTGGTTCGTGCGAAAGACATCCTTC-------------------TCTCTATCTTTGGAACAAATC-AAAACGTG-A-TGAAGAAT---------AGAGATGGGTGTATTTGGGAGGAGGTGGATTTAATATAATTTT----CACTCT----CGCACAAAGA
s cb4.chrX              9195040 179 + 21540570 AGCACTCCCAG---------GAAAACAAT--GCA---CCGATTAATTAATTTT-----------GGTTCGAAAGACATCCTCTTTCCGCTTTTTTCCGTTCTACTCTATCTTTGGAACAAATCAAAAACGTG-ACTGAAGGCTAAAAAGGAAGAGGATGAATGTATT----------TAGAATTAATATGATTTT----CGCGCCATACCACACAAAGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1081993 163 -  4500979 AGCACTACTGAACAACTGC-GAAAACAAT--GCA---CagattaattaatttttttttgtggcCAGTGCGAAAGACATCCTTC---------------TTTTACTCTATCTTTGGAACGAATC-AAAACGTG-A-TGAAGAAT--------GGGGGATGGGTGTATT----------TGGATGTAATATGATTTT--------------CACACAAAGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6050083 167 + 20921866 AGCACTTCGGAACAACTGC-GAAAACAATACACA---Cagattaattaa-ttt--tttgtagttggtGCGAAAGACATCTTCC---------CTTTTCCCCTTCTCTATCTTCGGAACGAATC-AAAACGTG-A-TGAAGAAT---------GGAGATGGGTGTATT----------TGGATTTAATATGATTCT--------------CACACAAAGA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2363236 167 +  4147112 AGCACTTCCGAACAACTGC-GAAAACAAT--GCA---Cagattaattaatttt--tttgtggttgGTGCGAAAGACATCcttc---------tttccttccttctCTATCTTTGGAACGAATC-AAAACGTGAA-AGAAGAAT---------GGAGATGGGTGTATT----------TGGATTTAATATGATTTT--------------CACACAAAGA
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17084  353670 169 +   375229 AATACTTCTGAATAACTGAGAAAAACAAT--GTGGATgagattaattaatttt-tttcgtaatgGGTGCAAAAAACGAAAGAC-------------------ATCCTATCTTTGGAACAAATC-AAAATACG-A-ACAAGGAT---------GGAGATG-GTGTATT----------CGGATTTAATATAATTCAGAGGCACCC-----CGAACAAAGA
i caeJap4.Scaffold17084 I 443 C 0

a score=-930.000000
s ce10.chrX             4093283 2 + 17718866 -TT
s cb4.chrX              9195220 1 + 21540570 -T-
i cb4.chrX              I 1 I 46
s caeRem4.Crem_Contig0  1082157 1 -  4500979 -T-
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold630  6050253 1 + 20921866 -T-
i caeSp111.Scaffold630  I 3 I 6
s caeJap4.Scaffold17084  353839 2 +   375229 AT-
i caeJap4.Scaffold17084 C 0 I 13
e caePb3.Scfld02_0      2363403 31 +  4147112 I

a score=-1796.000000
s ce10.chrX             4093285 44 + 17718866 CTTCGTTTTTAACTTGGAATCTAGTGGAAGTTATAGTTATCCTC-----
s caeRem4.Crem_Contig0  1082164 27 -  4500979 TAACGT-----TTTTGGAATAAGTTGGATGTG-----------------
i caeRem4.Crem_Contig0  I 6 I 1
s caeSp111.Scaffold630  6050260 26 + 20921866 TAACG------AATTGGATTGAGTTGGATGTA-----------------
i caeSp111.Scaffold630  I 6 C 0
s caeJap4.Scaffold17084  353854 31 +   375229 CTGCG------CTTTCAAGTAAGTTGGATGTG------------TGGAA
i caeJap4.Scaffold17084 I 13 C 0
e caePb3.Scfld02_0      2363403 31 +  4147112 I
e cb4.chrX              9195221 46 + 21540570 I

a score=-9742.000000
s ce10.chrX             4093329 41 + 17718866 GCGCGGCAAA------------------ATT-------TGTGCCCAATTGGTATTGCACAACATTC
s caeRem4.Crem_Contig0  1082192 25 -  4500979 AGGCGA-AAA------------------ATG-------CTTATTCAC---------GACA------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6050286 28 + 20921866 GAGCGAGAAA------------------ATG-------TCCATCCAT---------CACGAA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363434 34 +  4147112 --gcgagaaa------------------aagagagggccCCATCCAA---------CACCAAG---
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17084  353885 38 +   375229 AGGCGTGAAAAGTGAGGagttgatgatgatg-------atgatgc---------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9195221 46 + 21540570 I

a score=38990.000000
s ce10.chrX             4093370 73 + 17718866 TTCTTGGTGTAGGTAAGTGTCTTCTAATGAATATTTGTTTCAAATGTCTGATTTATAAATGAATATTCATAAA
s cb4.chrX              9195267 66 + 21540570 TTAAGAGCGTAGGTACA-----TTTAATGAGTATGCGTTTCTAA--TCAGATACTAAATTGAATATTCATAGA
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0  1082217 64 -  4500979 CCAAGAGTGTAGGTAA-------CTAATGAATATTTGTTTCTAA--TCATATACCAAACTGAATATTCATAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6050314 59 + 20921866 -----AGTGTAGGTAT-------TCGATGAATAATTGTTTCTAA--TCAGACatcaaattgaatattcataAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363468 59 +  4147112 -----AGTGTAGGTAT-------CTAATGAATATTTGTTTCTAA--TCAGAAACCAAACTGAATATTCATAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  353923 65 +   375229 tCTGGACTATGAGATTTTTCCACCTAATGAATATTTGTTTCTAA--TCAGACA------TGAATATTCATGAA
i caeJap4.Scaffold17084 C 0 I 78

a score=2273.000000
s ce10.chrX             4093443 47 + 17718866 CTGGCGTT-------GCATTGCATCA-CAGAGATTGGG--------GGCGAAAAAAGGAAACT
s cb4.chrX              9195333 46 + 21540570 CTCGGAGCAA---AAGTGTTgcatcaacaaaaaaaaag--------gatgaaaCT------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1082281 57 -  4500979 CTCGCATTTAAGGAAGTGTTGCATCATCAAAAAGTGGGAGACGACTGaagaaact------ca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6050373 51 + 20921866 GTGCCATTTAAAGAAGTGTTGCATCACAAGAGAA------------GACGAAGCAAGAGTGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363527 51 +  4147112 CTGGCATTTAAAGAAGTGTTGCATCAGAGGAGGA------------GGCGTAACTCttgcctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  353988 78 +   375229 I

a score=181941.000000
s ce10.chrX             4093490 225 + 17718866 TCTTCCTACTCAAAAAAAAAGTATGTGGGTAGC-GTAAATCTCAGTACGAAGTCAGCGATGATGAGTTAAGAAG-TTT--GTGAGTCGGTCTTAGCATAATGTTTTTGGGGAGC---------------GTCACG--GCGGTGGGCACGTC-AAAAATGTGACTATTGCCGACAAAAAGAATAAGTGATCAGTTTTGGTAAGCCCT-CTTAGTTTCTTCCGTTTGAAGA----AGCACACATTTTTGGGAGA-
s cb4.chrX              9195379 221 + 21540570 TCTTC----------AGAGAAGA-----------GTGAATCGCAGT----AGTCAACGATGATGAGTTAAGAAGTTTTGGGTGGGTCGGTCTTAGCATAATGTTTTTGAGAAGGAAGCGCGGAGCCCACGACTCC--GCCAGAGACGTCTC-AAAAGTGTGACTATTGCCGACAAAAAGAATAAGTGATCAGTTTTGGTAAGCCTCCTTTGGTTTCTTTCGTTTCAGGACGACAGCACATATTTTTCTA----
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1082338 217 -  4500979 ttttc----------aaaaagtatgtGGGTAGCGGAAAATCTCAGTACGAAGTCAGCGATGATGAGTTAAGAAG-TTTGGGTGGGTCGGTCTTAGCATAATGTTTTTGGGGAAGG--------------GACTCA--CTGGTGGGCACGTC-AGAAGTGTGACTATTGCCGACAAAAAGAATAAGCGATCAGTTTTGGTAAGCCCC---TAGTTTCTTCCGTTTGAAAA----GGcacatatttttgtgaaa-
i caeRem4.Crem_Contig0  C 0 I 224
s caeSp111.Scaffold630  6050424 220 + 20921866 TCTTC-----TAACAAAAAAGTATGTAAGTAGC-GTAAATCTCAGTACGAAGTCAGCGATGATGAGTTAAGAAG-TTTGGGTGGGTCGGTCTTAGCATAATGTTTTCGGAGAGC---------------GACGCA--ATGGTGGGCACGTCGAAAAGTGTGACTATTGCCGACAAAAAGAATAAGTGATCAGTTTTGGTAAGCCCC----AGTTTCTTCCGTTTGAAAA----AGCACATATTCTTGTGAGT-
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2363578 211 +  4147112 ttttc----------aaaaagtat----gtgGC-GTAAATCTCAGTACGGAGTCAGCAATGATGAGTTAAGAAG-TTTGGGTGGGTCGGTCTTAGCATAATGTTTTTGGAGAGC---------------GACGCG--GTGGTGGGCACGTC-AAAAGTGTGACTATTGCCGACAAAAAGAATAAGTGATCAGTTTTGGTAAGCCCC---TAGTTTCTTCCGTTTGGAAA----AGCACATATTTTTGGGAGA-
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  354066 224 +   375229 tttttttttttgagaaaaatgtgtGCGGGTAAC-GTAAATCTCAGTACGAAG----CGATGATGAGTTAAGAAG-TTT-GGTTGGCCGGTCTTAGCATAATGTTTTTGGGAAGC---------------GACTCGGTGTGGTGAGTCGACA-GAAAGTGTGACTATTGCCGACAAAAAGAATAAGTGATCAGTTTCAGTAAGCCCC--TTGTTTCCTTCCGTTTCAAAA----AGCACATATTTTTCCGAAGA
i caeJap4.Scaffold17084 I 78 C 0

a score=3861.000000
s ce10.chrX             4093715 25 + 17718866 GCACCCTTGGAAGACAAA-GGTGTTC
s cb4.chrX              9195613 25 + 21540570 GGAGGGACAAATAAGGGA-GGTGTGC
i cb4.chrX              I 13 C 0
s caeSp111.Scaffold630  6050648 25 + 20921866 ggggaaaatgagaaaaga-ggtGTTC
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2363793 26 +  4147112 gcgaaaatagaaaaaaaacgatgttc
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  354290 20 +   375229 -----GAATAAAGAAAGA-AGTGTTC
i caeJap4.Scaffold17084 C 0 I 201
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=-409.000000
s ce10.chrX             4093740 1 + 17718866 G
s cb4.chrX              9195638 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6050673 1 + 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2363819 1 +  4147112 G
i caePb3.Scfld02_0      C 0 I 153
e caeJap4.Scaffold17084  354310 201 +   375229 I
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=618.000000
s ce10.chrX             4093741 9 + 17718866 GTCTGGAAT
s cb4.chrX              9195639 9 + 21540570 GTCTGtgag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6050674 9 + 20921866 TTCtgatat
i caeSp111.Scaffold630  C 0 I 132
e caePb3.Scfld02_0      2363820 153 +  4147112 I
e caeJap4.Scaffold17084  354310 201 +   375229 I
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=-4210.000000
s ce10.chrX             4093750 663 + 17718866  
s cb4.chrX              9195648 438 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2363820 153 +  4147112 I
e caeJap4.Scaffold17084  354310 201 +   375229 I
e caeSp111.Scaffold630  6050683 132 + 20921866 I
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=-1606.000000
s ce10.chrX             4094413 35 + 17718866 AATTAAAAAAAATTGCACTAT--TGTT----GTT-TTCTAAA--------------
s cb4.chrX              9196086 38 + 21540570 AAT--AGACCAGTTGAGCTGA--TGTTTTCCGTT-TCTTTGAG-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6050815 51 + 20921866 -----aaataaaaagCACTGACCTGTTTGCTGTTGTTTTTAAGAGAGGTTTTCAAG
i caeSp111.Scaffold630  I 132 C 0
e caePb3.Scfld02_0      2363820 153 +  4147112 I
e caeJap4.Scaffold17084  354310 201 +   375229 I
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=-910.000000
s ce10.chrX             4094448 96 + 17718866 AACCAAATC-----TAGAAAACGAGATGTTTTTTTCATATTTTGAAAA-GTTGCTCATCCACCCACTCTCTCTC-GAACAAAATTAAAATTCATATGAACTCG-
s cb4.chrX              9196124 90 + 21540570 ----AATtcctagattaaaaaaaa----ttgtcagtaCATatgtaaaatattttttatcacAACA--ATTTCAC-GAACACA--TAACTTTC-TCTGAACTTCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6050866 79 + 20921866 GAACagacc-----tgaaaaaag----------atcaaatttTATGGATATTGTTTATCAACA-------TCAT-GAAAACGGTTTACTTCC-CGTGAACCCA-
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2363973 81 +  4147112 AAacaactc-----tgaaaaaaga---------aacttatgTCACAAAAGTTGTTTATCGCGA-------ACGCAGAAAACAGTTTACTTTC-TATGAACCCA-
i caePb3.Scfld02_0      I 153 I 1
e caeJap4.Scaffold17084  354310 201 +   375229 I
e caeRem4.Crem_Contig0  1082555 224 -  4500979 I

a score=2743.000000
s ce10.chrX             4094544 87 + 17718866 ATGCATTAGACTTGTACATGATTCCCTTTCAAACCTTATAAA---AAACACGACA-AAATGCACGTCTAATAAAAATTGGGTCTCAGAAAA
s cb4.chrX              9196214 83 + 21540570 ACGTTTTAGACTTTCGTATAAA--TATTTCTATATTcataaagagaaaaaaacaggatACGCGGGACCACTGGAGT------CTCGAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1082779 85 -  4500979 ATTCATTAAACTTGTACATAAT--CAttactatttttaaaaataaaaacagggAAGA---GCGAGACTAGTAGActttttcatttgaag-a
i caeRem4.Crem_Contig0  I 224 C 0
s caeSp111.Scaffold630  6050946 77 + 20921866 AGACATTAGACTTGCACATAATT-TACTCTCACTTTCATAGA---AAACAAGGAATATACACAaa-------ga-tttcaattc--aaaaa
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2364055 73 +  4147112 CTTTATTAGACTTGCacataat-------tcatttttatgaa---aaacagggaa-atGCACAAG-------GACTCTTTATCCCGAAAAT
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084  354310 201 +   375229 I

a score=28148.000000
s ce10.chrX             4094631 82 + 17718866 AGTGCA--------TAACACAGAGACGAA---------GGACCTCT-GAATATATTA-----GCGCTGT--CCTAACAACAA--AGAAAAGGCTAGAAATCTGAAACCG
s cb4.chrX              9196297 93 + 21540570 AGTACACGCCCTCCTgtcttcagaaaaat---------ggacCTCCATAATATATTA-----ACGTCAT--CCTAACAACAAAAGAGAAAGCCTCGAAATTGGAGATGG
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0  1082864 87 -  4500979 agTACA-------CCGGCATGAAGAAAAA---------GGACCTCC-TAATATATTAGTTACATGTCTT--CTTCACAACAA---AGAAACACTAGAAATGTGAAACCG
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold630  6051023 88 + 20921866 agtgca-------CAAGAGC--AGAAAAA---------GGACCTGC-TAATATATTAGTTTTGTGTCATAGCCTAACAACAG--GGAAAACGTTGGAAATGTGAAACCG
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2364128 88 +  4147112 ATTACA-------taaacgcagagaaaaa---------ggacCTGC-TAATATATTAGTCTTGTCTCAT--CCTAACAACAA--TGAAAACGCTAGAAATGTGAAACCG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  354511 88 +   375229 AGTGCA--------TAAAATAGTGGAAAAGGACGCCACGGACCACCAGAAATTTTTAGTAACGCGTTAA--AGCAAAAACAA-----------TAGAAATAGGAAACTG
i caeJap4.Scaffold17084 I 201 C 0

a score=77.000000
s ce10.chrX             4094713 3 + 17718866 GAT
s caeJap4.Scaffold17084  354599 3 +   375229 GAG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2364216 1 +  4147112 I
e cb4.chrX              9196390 34 + 21540570 I
e caeSp111.Scaffold630  6051111 1 + 20921866 I
e caeRem4.Crem_Contig0  1082951 45 -  4500979 I

a score=-4300.000000
s ce10.chrX             4094716 36 + 17718866 TTTCCAGAGAGA----AAGACCATCG---GTGCCTTAGGATGT
s caeSp111.Scaffold630  6051112 37 + 20921866 ---CTAGGGAGTC-TTGAAACCATTGACTATTCCAAAAGCT--
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2364217 38 +  4147112 ---CTGCTCAGT--TTGAAACCATCGATCATTCCAAAgacttt
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  354602 19 +   375229 ------------ACTTGAAACCAATGACCGA------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9196390 34 + 21540570 I
e caeRem4.Crem_Contig0  1082951 45 -  4500979 I

a score=456.000000
s ce10.chrX             4094752 8 + 17718866 CTGATACT
s cb4.chrX              9196424 8 + 21540570 CTCATCCT
i cb4.chrX              I 34 I 2
s caeSp111.Scaffold630  6051149 4 + 20921866 ----CACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2364255 8 +  4147112 cctcttct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  354621 8 +   375229 CCGATCTC
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1082951 45 -  4500979 I

a score=709202.000000
s ce10.chrX             4094760 1038 + 17718866  
s cb4.chrX              9196434 1047 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1082996 1012 -  4500979  
i caeRem4.Crem_Contig0  I 45 C 0
s caeSp111.Scaffold630  6051153  977 + 20921866  
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      2364263 1004 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  354629 1051 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-137.000000
s ce10.chrX             4095798 1 + 17718866 A
s caePb3.Scfld02_0      2365267 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  355680 1 +   375229 a
i caeJap4.Scaffold17084 C 0 I 37
e cb4.chrX              9197481 0 + 21540570 C
e caeSp111.Scaffold630  6052130 36 + 20921866 I
e caeRem4.Crem_Contig0  1084008 0 -  4500979 C

a score=-1140.000000
s ce10.chrX             4095799 5 + 17718866 TTATA-----
s cb4.chrX              9197481 8 + 21540570 --aaaatatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084008 3 -  4500979 --aaa-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2365268 5 +  4147112 ATATA-----
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold17084  355681 37 +   375229 I
e caeSp111.Scaffold630  6052130 36 + 20921866 I

a score=-12271.000000
s ce10.chrX             4095804  93 + 17718866 CGttttt-------------------ttttaaca----tttttacataaaatataatt-------------tcaaaaaattGTTATAACTCAAATTATGTAGCCAGTTTTTGCTTTTGTGTCT-----------------------TATGAA------------------------------------------------------------------
s cb4.chrX              9197489 215 + 21540570 cggCTTTGGATTAATATACACCTCActgaaaatatcttttttaaaatagaaaattatgaattggAGGCTAGTTACAAAATGATTATAA---AAGgtcaaaactgaatttttctgttttcatcgaaaaactaCCGTGTCTCGAGTAACAGTAAAAATAGAATGCTGAAATTTGCCCCGCTCGACATGTCAAGCTTTTGAATTGTAAGCTGAATTATAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084011  38 -  4500979 --------------------------caaaagca----tTCTGAACTAAAACGTTATG----------------------------------------------------------------------------------------CGGTAA-------------------------------------------------GTAA-------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2365273  32 +  4147112 I
e caeJap4.Scaffold17084  355681  37 +   375229 I
e caeSp111.Scaffold630  6052130  36 + 20921866 I

a score=-1788.000000
s ce10.chrX             4095897 300 + 17718866 TATCGTTCTGATTTGAG-GCAAATACAGACGATTCGTTTTAACATAACTTTTTA-------GAAAATTGTAGTTCTGGGTATTCCATACAAATAGAGCACTTTTTGTTTGAAATTCAACA------------------------------TTTCACAGATTCGTGTATGCACAAACCA------CAGAGGTTAAGAAATAGTTAAAGCTAC--------TCTAATTAAAATTT-CCAGTATTCCCGCGAAAAAACAAACCGAAAATCCCATTTTTAAGAAAATATTCCATTCCAAATTTTATTTTCGGAATAGTCTATCAGTGTTTAATTCTACTGGGGTTTTTTTT-----------------CCAAAT
s cb4.chrX              9197704 336 + 21540570 AATTGTAAGCTTTTGAATGAGAATACTCAAGACTGaaattaacacatttttttgaattcctgaagtTTGTCGCTCTCCGAAAACGTCACAACTAACACA-----GAATTGAGATTTGTCACCTTAATACCGTTTATCgcgcttttttggtttttttaaattcactTCAAGATAAACTAGTTTTTTAGAAGTTAA-------TTAAAGTTACTGTTTCAGTATGATTAGAATTTGTCAG---------------ACAAATTCTGGACtactttttc----agatcttcaaaGTTGAATATcatcaacagaaaaat---tcaaagtgtgATATCTCTTTGTCTGTTATTGTATAATGGAGAACCCGTGAACT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2365273  32 +  4147112 I
e caeJap4.Scaffold17084  355681  37 +   375229 I
e caeSp111.Scaffold630  6052130  36 + 20921866 I
e caeRem4.Crem_Contig0  1084049   0 -  4500979 C

a score=422.000000
s ce10.chrX             4096197 1 + 17718866 T
s cb4.chrX              9198040 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084049 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6052166 1 + 20921866 T
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      2365305 1 +  4147112 T
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold17084  355681 37 +   375229 I

a score=93533.000000
s ce10.chrX             4096198 100 + 17718866 ACCTCTTCTGCTGACAAGTCATATGGATTGTTATCGTGTGATCCTTTTTTATTGTTTCCAAATTGCATATGAACCAAATATTTCTTTGCCTGTCTCATAT
s cb4.chrX              9198041 100 + 21540570 GCCTCTTCTGGTGTCAAATCGTATGGATTACTCTCCTGTGATCCTTTCTTATGATTTCCGAACTGCATATGATTCAAATACTTTTTCGCCTGTCTCATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084050 100 -  4500979 ACCTCTTCCGGGGAGAGATCATATGGGTTGTTATCATGTGATCCTTTTTTGTGGTTACCAAATTGCATATGGTTTAGGTATTTTTTGGCTTGTCTCATGT
i caeRem4.Crem_Contig0  C 0 I 223
s caeSp111.Scaffold630  6052167 100 + 20921866 ACCTCCTCTGCAGATAAATCATACGGATTGTTCTCTTGAGAACCCTTTTTGTTATTACCAAACTGCATATGATTCAAATACTTCTTCGCTTGTCTCATAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2365306 100 +  4147112 ACCTCTTCAGGAGACAGATCATATGGGTTATTCTCTTGTGATCCTTTCTTGTTGTTACCAAACTGCATATGGTTCAAATACTTCTTGGCTTGTCTCATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  355718 100 +   375229 ACCTCTTCACACGACAAATCGTACGGATTACTTTCATGTGATCCTTTTTTACTATTTCCGAATTGcatattgttcaaatatttcTTAGCTTGTCTCATAT
i caeJap4.Scaffold17084 I 37 C 0

a score=187655.000000
s ce10.chrX             4096298 346 + 17718866 AATCTTTA--------A-AATAATAATTTTATGGATTTTT----CAAGTTACTA--AAA---AGCCAACTTTTGATAATTGTGTGATGTTCGTTAGCATTCCCATGAATCGTTTTGTGTTCAATACCGTGATCGTCTAAAAAGTCT--GTAACCTTATTT--TGAAC---------TTCT----------C-ATTAAAAATTGTTTAACCAACCTTTTGCAGACTTCTCATCCATATCTCTCAAGCTGAACAGTGCATTTCTTCTCGTTCCAGAATTTCGCCGTTTCAGAGTATTTTCCACTGGAATTGTTGGAGAGGAAGGTACAGGTGGCAAGTACAATTTGGGTTCAGTGACGTCAGGTAATGGTACAACCAGGAATCGACTGAA
s cb4.chrX              9198141 340 + 21540570 AACctaca--------a-ctt-----ttttttaaactact----gAAGTTCCTT--GAA---AACTTACTTTTGATGATTGTGTGGTGTTCGTTGGCGTTTCCATGAATTGTCTTGTGCTCGATACCATGatcatccaaaaaatct--gtTGTATAAATA---AAAT---------AGCG----------TGATaaaaaaaTC-TTGACCAACCTTTGGCAGATTTCTCATCCATATCTTGTAAACTGAACAACGCATTTCTCCTTGATCCCGAGTTACGGCGCTTCAATGTATTCTCAATTGGCACAGATGGGGAAGACGGAATAGGTGGAAAGAACAATTTGGGTTCACTGACGTCAGGAAGAGGTACAACTAGGAATCGACTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084373 348 -  4500979 AACCTTTAGGAATTATA-CTC---AATTCGTTTAAtta------gaaaaacttt--caa---ctctTACTTTTGATGATCGTGTGATGCTCGTTTGCATTTCCGTGAATTGTCTTGTGTTCAATTCCATGATCATCTAAGAAATCTAAAAAGTATTAATAGTCAATT---------TTCG----------T-ATCAATAACTC-----CCAACCTTTTGCAGACTTCTCATCCATATCTTGCAAACTGAACAATGCATTTCTTCTTGACCCCGAATTCCTCCGTTTCAAAGAGTTCTCAATAGGGACGGTTGGTGAAGAAGATATTGGTGGGAAATACAGATGGGGTTCGCTGACGTCAGGAAGTGGTACAACAAGAAACCGACTGAA
i caeRem4.Crem_Contig0  I 223 C 0
s caeSp111.Scaffold630  6052267 344 + 20921866 AACCTGAA--------A-GAT-----ATGCCTGAACTATT-----ACATATATT--AAATGGAACAAACTCTTGATGATTGTGTGATGCTCGTTTGCATTTCCGTGAATTGTCTTGTGTTCAATACCATGATCAtcaagaaaatct--gaaa-atagaca-----at---------tcagaaaaaaagact-tttaagatttt-----tcaaCCTTTCGCAGACTTCTCATCCATATCTTGCAAACTGAACAGTGCGTTTCTTCTTGAACCCGAATTCCGTCGTTTCAGAgtattttcaattggaacaTTCGGAGAGGAGGGTATTGGTGGGAAGTACAATTTGGGTTCACTGACGTCAGGAAGCGGAACAACCAGGAATCGACTGAA
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      2365406 352 +  4147112 AGCCTGAA--------ATGGc-----tcattcgaatttttcatgaataaatattcagaATGGAACATACTTTTGATGATTGTGTGATGCTCATTTGCATTTCCATGAATCGTCTTGTGTTCAATTCCGTGATCATCAAGAAAATCT--TAAATTTACATC-----ATTTTCTCTCCTCTG----------T-TTCTAAAAACC-----CAAACCTTTAGCAGACTTTTCATCCATGTCCTGTAAACTGAATAATGCATTTCTACGTGATCCAGAATTCCTTCGCTTCAAAGTGTTTTCTATTGGAACAGATGGAGAAGATGGTATCGGAGGAAAGTACAGTTTAGGTTCACTGACGTCAGGAAGAGGAACAACCAGGAATCGACTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  355818 253 +   375229 ------------------------------------------------------------------AGCTTTTAATTATTGTATAATGCTCGTTTGCATTTCCATGAATAGTCTTGTGTTCAATACCGTGATCATCCAAAAAGTCC--------------------------------------------T-------------------------TTGCAGACTTTATATCCATATCTTGCAAACTAAAAAGTGCATTTCTCCGTGATGTGGAATTTCGTCGTTTTAAAGGATTTCCCACTGATACAGTTGGTGAAAGAGGGACAGGCGGGAAGAATAGTTTGGGCTCACTGACATCAGGCAACGGCACGACCAAAAAACGACTGGA
i caeJap4.Scaffold17084 C 0 C 0

a score=-3832.000000
s ce10.chrX             4096644 11 + 17718866 TTGAAACATTA----
s cb4.chrX              9198481  4 + 21540570 -------ATTT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084721  4 -  4500979 -------ACAA----
i caeRem4.Crem_Contig0  C 0 I 27
s caePb3.Scfld02_0      2365758 11 +  4147112 ATTCATCATTC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  356071 11 +   375229 ----AACACACAATA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6052611 36 + 20921866 I

a score=-3412.000000
s ce10.chrX             4096655 28 + 17718866 AGATGCAAATAGTA--------AAAAGATGAAACCA
s cb4.chrX              9198485 28 + 21540570 GTATGTAGAAAATT--------ATGAAGTcgatcaa
i cb4.chrX              C 0 I 7
s caePb3.Scfld02_0      2365769 16 +  4147112 --------AGGATT--------ATA----CGAACTG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17084  356082 34 +   375229 AAACATAAACAATATTCATGCCGTAAGTttaaac--
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6052611 36 + 20921866 I
e caeRem4.Crem_Contig0  1084725 27 -  4500979 I

a score=-1997.000000
s ce10.chrX             4096683 4 + 17718866 ACTA
s cb4.chrX              9198520 4 + 21540570 actc
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0  1084752 4 -  4500979 acta
i caeRem4.Crem_Contig0  I 27 C 0
s caePb3.Scfld02_0      2365795 2 +  4147112 -TT-
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17084  356116 2 +   375229 -tc-
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6052611 36 + 20921866 I

a score=354951.000000
s ce10.chrX             4096687 497 + 17718866  
s cb4.chrX              9198524 446 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1084756 444 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6052647 490 + 20921866  
i caeSp111.Scaffold630  I 36 C 0
s caePb3.Scfld02_0      2365797 496 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  356118 499 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=1054.000000
s ce10.chrX             4097184 2 + 17718866 AG
s cb4.chrX              9198970 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1085200 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6053137 2 + 20921866 TG
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  356617 2 +   375229 AG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2366293 2 +  4147112 I

a score=14829.000000
s ce10.chrX             4097186 19 + 17718866 TGGTATGAACTCT-GAAAAT
s cb4.chrX              9198972 17 + 21540570 TTGTATGAACTCt-gcaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1085202 19 -  4500979 TAGTatgaactct-gaaaat
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold630  6053139 19 + 20921866 TTGTATGAACcct-gaaaac
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2366295 20 +  4147112 TAGTATgaactctggaaaaa
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  356619 19 +   375229 TAGTGTGAACTCT-GCaaaa
i caeJap4.Scaffold17084 C 0 C 0

a score=-9213.000000
s ce10.chrX             4097205 31 + 17718866 --AGATATTGCAAAATTTTCAAGAAATGT-GATT
s cb4.chrX              9198989 23 + 21540570 ----------aaattttatgataaacttC-AATG
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold630  6053158 26 + 20921866 --------ttttattttccgCTACAAAACAAATT
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2366315 25 +  4147112 --------ttgaattccattATACAAAGC-TATG
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17084  356638 30 +   375229 aaaGACCCCTGTATGTAAACAAACAC-GC-AA--
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1085221 31 -  4500979 I

a score=120041.000000
s ce10.chrX             4097236 125 + 17718866 TGCTTACAGATTATTTGATGGTGGGATATCCGGAAGGAAAGGCAAATGTTTAATTTTTATGATTGTATCGAAGAATGAAGGTTGTAAGTATGCACAAACTGCATTGGATAACATCACAGAAATCT
s cb4.chrX              9199021 125 + 21540570 TACTTACAGATTATTGGATGGAGGAATGTCCGGTAGGAATGGTAAGTGTTTGATTTTGATAATGGTATCGAAGAAAGAGGGTTGAAGATAAGCACAAACAGCGTTGGACAACATAACAGATATCT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1085252 125 -  4500979 TACTTACAGATTACTGGAGGGTGGAATATCGGGTAAAAATGGcaaatgtttgattttgatgatagtatcaaaaaatgaaggttGCAAATAAGCACATACTGCATTTGACAACATTACAGATATct
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold630  6053190 123 + 20921866 --CTCACAGATTATTTGAGGGTGGAATGTCAGGCAAGAACGGTAAATGtttgattttgattattGTATCAAAGAATGATGGTTGTAGGTAGGCACAAACTGCATTGGATAACATCACAGATATCT
i caeSp111.Scaffold630  I 6 I 6
s caePb3.Scfld02_0      2366346 123 +  4147112 --CTAACAGATTATTTGAGGGTGGAATGTCCGGAAGGAAGGGCAAATGCTTGATTTTGATTattgtatcaaaaaatgatggttgCAAATAGGCACATACAGCATTTGATAGCATAACAGATATCt
i caePb3.Scfld02_0      I 6 I 29
s caeJap4.Scaffold17084  356668 124 +   375229 -ACACACAGATTATTTGAAGGTGGGATGTCCGGAAGGAAAGGAAGGTGTTTGATTTTGATAATAGTGTCAAAGAAAGATGGTTGTAGATAGGCGCAAACTGCATTTGACAACATCACGGAtatct
i caeJap4.Scaffold17084 C 0 C 0

a score=-7373.000000
s ce10.chrX             4097361 29 + 17718866 GTAACCAGAACGTTACTACTGTAAAAAGC--
s cb4.chrX              9199146 24 + 21540570 -----GTAGGCATTAGTTTCGATTACATT--
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1085377 23 -  4500979 ------caaacttctttttctaaaagttt--
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold630  6053319 28 + 20921866 gcaa-ttaaaaaaaattatcacaAAAGGT--
i caeSp111.Scaffold630  I 6 C 0
s caeJap4.Scaffold17084  356792 30 +   375229 -tcaaaaaaatattgaaattgaaaagtaTAC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2366469 29 +  4147112 I

a score=106190.000000
s ce10.chrX             4097390 133 + 17718866 -------------------AGATCAATTCACCATGACCGGCAAGATGAAATGAAGTTGACCAGTGATCTCAAAAATCATAACAGAAACTGAAACAGTGTGGGTGACAGAAGCAGAAAACGCTGCAGCGCCAACGATTGCATAAATTCCCGGA
s cb4.chrX              9199184 132 + 21540570 -------------------AATAT-GTATACCATGACTGGCAAGATGAAATGAAGTTGAccggtaatttcaaaaatcatcacaGACACCGACACCGTATGAGTGACAGATGCAGAAAAGGATGCCGCACCGACAACGGCGTAGATTCCAGGT
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0  1085413 126 -  4500979 --------------------------CTCACCATAACTGGCAATATGAAATGAAGTTGTCCAgtaatctcaaaaatcattacAGAGACAGACACTGTATGGGTAACAGAAGCAGAAAATGAAGCAGCACCAACTACAGCATAGATTCCAGGC
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold630  6053347 127 + 20921866 -------------------------GCATACCATAACTGGCAAGATGAAATGAAGTTGTCCGGTGATTTCAAAGATCATCACTGATACTGATACAGTATGGGTGACAGATGCAGAAAAAGCAGCAGCCCCAACAACGGCATATATGCCTGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2366498 133 +  4147112 -------------------AGAATAACGTACCATAACAggtaaaataaaatgaagttGTCCTgtgatctcaaaaatcataacagACACGGACACCGTATGAGTTACTGAGGCAGAAAACGAGGCTGCACCCACAACTGCATAAATGCCTGGT
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold17084  356822 152 +   375229 ACTTCACGGGTTGTCCGTGCAAGTTGTTTACCATGACTGGTAAAATGAAATGAAGTTGACCAGTGATTTCGAAAATCATCACAGAAACAGAAACGGTGTGAGTTACGGACGCAGAAAAAGCAGCTGCTCCGACTACGGCATAGATTCCAGGA
i caeJap4.Scaffold17084 C 0 I 79

a score=23521.000000
s ce10.chrX             4097523 44 + 17718866 TGAATTATATGAATATCTTCTAGGGCTAAGCCAATAATCTGAAA
s cb4.chrX              9199316 44 + 21540570 CTTATAGCATGAATGTCTTCCAGAATCAGCCcaattgtctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1085539 44 -  4500979 CGTATGACATGAATGTCTTCTAGTATCAACCCAAGTacctgaaa
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold630  6053474 44 + 20921866 CTGATAACATGAATGTCTTCCAGTATCAGTCCGAGTATCTGAAA
i caeSp111.Scaffold630  C 0 I 28
s caePb3.Scfld02_0      2366631 44 +  4147112 CGAATTGCATGAATGTCTTCAAGAATCAATCCAAGAACCTAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  356974 79 +   375229 I

a score=187.000000
s ce10.chrX             4097567 8 + 17718866 AAATTAAA
s cb4.chrX              9199360 8 + 21540570 actctaaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2366675 0 +  4147112 C
e caeJap4.Scaffold17084  356974 79 +   375229 I
e caeSp111.Scaffold630  6053518 28 + 20921866 I
e caeRem4.Crem_Contig0  1085583 31 -  4500979 I

a score=0.000000
s ce10.chrX             4097575 319 + 17718866 TAAAAAGTCAAAACTCACATGCCACATCAAAGTTTAGACCGGGGAAACTTTAAAAATTTATTTGAAGCTTTTTTCGGTATATTTTTTGCAAAATAATTCTGTGCCCCGTAAAAACGCCCCAGAAGCTGTTTTCGAATACTTTTGATATATTTTAAGGCGTTTAAAAGTAGGCATATATTCTCAACGCTCCTTTTTATTGCTTATTCTTTTCAAAGATTTATATATGCTTCCTAATTAATCGAACGTCTGCAAAAAGCGAATTTGGTACATTTCTAACAATATTAAAAATAATGCTAGAACGCGGAAAAACTAGTCAAGC
e caePb3.Scfld02_0      2366675   0 +  4147112 C
e caeJap4.Scaffold17084  356974  79 +   375229 I
e cb4.chrX              9199368   0 + 21540570 C
e caeSp111.Scaffold630  6053518  28 + 20921866 I
e caeRem4.Crem_Contig0  1085583  31 -  4500979 I

a score=-392.000000
s ce10.chrX             4097894 50 + 17718866 TTCTGCATTTGGTTGTACTTTTCAAAGTAAAATGTTTTTTTTTCGATCTT
s caePb3.Scfld02_0      2366675 22 +  4147112 TGTTGTATTTGGCCACATTTCT----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  356974 79 +   375229 I
e cb4.chrX              9199368  0 + 21540570 C
e caeSp111.Scaffold630  6053518 28 + 20921866 I
e caeRem4.Crem_Contig0  1085583 31 -  4500979 I

a score=-1455.000000
s ce10.chrX             4097944 30 + 17718866 TTTCTCAAATGTCAACAGCTCTGATAATAA
s cb4.chrX              9199368 19 + 21540570 tttctaaattttcaacaac-----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2366697  7 +  4147112 -----------ACCGCAA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  356974 79 +   375229 I
e caeSp111.Scaffold630  6053518 28 + 20921866 I
e caeRem4.Crem_Contig0  1085583 31 -  4500979 I

a score=-2167.000000
s ce10.chrX             4097974 5 + 17718866 AAATG--
s cb4.chrX              9199387 5 + 21540570 -AATT-T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6053546 5 + 20921866 -AAGCA-
i caeSp111.Scaffold630  I 28 C 0
s caePb3.Scfld02_0      2366704 4 +  4147112 -AAGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  356974 79 +   375229 I
e caeRem4.Crem_Contig0  1085583 31 -  4500979 I

a score=-80.000000
s ce10.chrX             4097979 3 + 17718866 GAT
s cb4.chrX              9199392 3 + 21540570 CCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1085614 3 -  4500979 GGT
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold630  6053551 3 + 20921866 AGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2366708 3 +  4147112 TGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  356974 79 +   375229 I

a score=242788.000000
s ce10.chrX             4097982 319 + 17718866 ACCTCTCCATAAAACCGTCCAATAGCGGCGCCTAGAACAAAAACCGGAAGAAAGACACCTGATGGTACTGGAAGTGTGAAACTGATTATCGAGAAGATGAACTGAAA---TAA---TTGATAT----CATGTTAATACAAAATCCAACAATCAGGTGTATGAAACTCACGTGAACTAGCACAAACAAAAACAACAGAAGGAGAATGTTTCCCCGATTTAACCAATGTGAATATATTTCTGCTCCGCAAACAAGATCATCTGACGATGTGACAATAAACGAACAATTTGCAAAAAAGTCACGTAGGTTTGTACCAAACTTTATCTGTAAC
s cb4.chrX              9199395 303 + 21540570 ACCTCTCCATATAATCTTCCGATAGCGGCACCTAAAacaaaaactggaagaaaaaCTCCTGTTGGAACTGGAAGTGTGAAACTGATGATAGAAAACACGAACTaaaaaaaTAG---CTGACTC----ATTGCTAATCACA-------------------ACAAACTCACGTGAACTATaacgaacaaaaaaagaagcaacaaAATATTTCCTCGATTCAACCAATGCGAATAGATTTCTGCTCCACAAACTAGATCATCTGTTGTTTTTGCCATAAACGAACAGTTTGCAAAGAAATCACGTAGGTTCGCTCCGAATTTTATCTGAAAC
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0  1085617 307 -  4500979 ACCTCTCCGTATAATCTTCCTATAGCGGCACCTAGAACAAAAACCGGAAGGAACACACCGGATGGAACTGGCAGTGTGAAACTAATTATTGAGAATATGAACTGAAAGTGATT---ATGATAT----ATTAATACTTACAGGCC---------------GGCAACTCACGTGAACTataacaaataaaaacaacaatagCAGAATGTTTCCTCGATTTAACCAATGTGAATATATTTCTGCTCCACAAACAAGATCATCCGGTGTTGTCGCCATAAACGAGCAGTTAGCaaaaaaaTCACGTAGGTTTGCACCgaattttatctgaaac
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold630  6053554 301 + 20921866 ACCTCTCCGTATAATCTTCCAATAGCTGCACCTAGAACAAAAACAGGTAGGAACACTCCAGATGGAACGGGTAGTGTGAAACTGATAATTGAGAATATAAACTGAACATTTCAAAGTTGAATTTG--ACCCCTGATAAAA----------------------ACCTTACATGAACCAgaacaaacaaaaacaaaagcaACAGAATGTTTCCTCGATTCAACCAGTGTGAATAGATTTCTGCTCCACAAACAAGATCATCTGTTGTTTTTGCCATAAACGAGCAGTTGGCAAAGAAATCACGTAGGTTTGTACCGaattttatctg----
i caeSp111.Scaffold630  C 0 I 39
s caePb3.Scfld02_0      2366711 300 +  4147112 ACCTCTCCGTATAGTCTTCCAATAGCGGCACCTAGaacaaaaacaggaagaaacaCTCCAGATGGGACAGGAAGTGTGAAACTGATAATTGAGAAtatgaactgaaaatctca---ttgaaTACGTTACCGTGATTTCCA----------------------AACTTACATGAACAattacaaacaaaaacaataataacaaaatgtttccacGATTCAACCAATGGGAATAGATTTCTGCTCCACAAACAAGATCATCTGTTGTTTTTGCCATAAAAGAGCAATTTGCAAAAAAGTCACGTAAGTTCGTACCAAACTTTATCTG----
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold17084  357053 298 +   375229 ACCTCTCCAAACAATCTTCCGATAGCTGCACCAAGAACAAAAACTGGTAGAAATACTCCAGTCGGTACTGGAAGGGTGAAGCTGATAATTGAGAAAATGAACTTAAAAATATC---TTTAGCTGC--AACTAGAATGTAA-------------------AGAGTCTTACGTGAACAagaacaaacaaaaacaaaagaagcATAATATTTCCACGGTTCAGCCAATGTGAATAAATTTCTGCGCTACAAACAAGATCATCGGTTGTTTTCGCCACGAATGAgcaatttgcgaaaaaatctCGGAGATTGGTTCCAAATTTTAT-------
i caeJap4.Scaffold17084 I 79 C 0

a score=0.000000
s ce10.chrX             4098301 36 + 17718866 AAGGTTGAAATAACTTTGTGATATAAAGCTGACTAA
e caePb3.Scfld02_0      2367011 44 +  4147112 I
e caeJap4.Scaffold17084  357351  0 +   375229 C
e cb4.chrX              9199698 36 + 21540570 I
e caeSp111.Scaffold630  6053855 39 + 20921866 I
e caeRem4.Crem_Contig0  1085924 37 -  4500979 I

a score=72873.000000
s ce10.chrX             4098337  98 + 17718866 CTCTTCCAGTTGAAAACATTCCAAGCCCATGCGGGTACGATACAACCGAAAATATACAAGATATTACAATTGGGTAGACTATCCAACT-AAA--ATTGGAA
s cb4.chrX              9199734  98 + 21540570 CCCTTCCGGTGGAAAACATTCCGAGACCATGTGGATATGAAAGAAGCGAGAAGGCGCATGAAATCACAATCGGGTATACTatccagct-gaa--aaaaaac
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1085961 100 -  4500979 CCCTTCCAGTTGAAAACATTCCGAGTCCGTGAGGGTATGATAGTACTGAGAATACACAAGAAAACACAATTGGGTATACAATCCAGct-gcatcaaaaaat
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold630  6053894  99 + 20921866 CCCTTCCTGTCGAAAACATTCCAAGACCATGTGGATAGGAAACAACAGAATATACACAAGAGAACACGATTGGGTATACGatccaactgaaa--attgtGT
i caeSp111.Scaffold630  I 39 C 0
s caePb3.Scfld02_0      2367055  98 +  4147112 CCCTTCCAGTTGAAAACATTCCGAGACCATGTGGATAGGAGACAACAGAGTAGACACATGAGAACACGATTGGGTACACTATCCAACT-AGA--ATTAAac
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold17084  357351  95 +   375229 -TCTTCCTGTCGAAAATATTCCAAGTCCATGCGGATAGGAAACAAGAGAATAAACGCAAGAAATAACAATAGGATATACTATCCAGct-aaa--tgaaa--
i caeJap4.Scaffold17084 C 0 I 32

a score=-11415.000000
s ce10.chrX             4098435 27 + 17718866 GTTTTA----AATCTTCAATTTTTTCAGAG--A
s cb4.chrX              9199832 32 + 21540570 att-tatagCTGTTTTCCATTTCTAACAAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086061 23 -  4500979 aat-tggag-------acataaataatgaa--a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6053993 24 + 20921866 ATTATGTTGGATTGTTTCAT------TGAA---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2367153 30 +  4147112 agtttgatgaaaatcatAATAAGTAATTGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  357446 32 +   375229 I

a score=193723.000000
s ce10.chrX             4098462 199 + 17718866 AACTCACTGTCTTTGAAAGACCATTTTGGCATATTGATTATTTCTCAAAAACAGTACCACGCAACGATAAAGAGATATATATCCAGCACCAAGTATACCACACAATAAACCAAGCAATGCAAAAAGTGGAAGTTCGTCGACGGAAAACGCATCCGGGCGGAAGCTTGTTTGGTAGAACGCGCTGACAGTTACTGAAAAA
s cb4.chrX              9199864 199 + 21540570 AGCTTACTGTctctggaaaattatttttgcatATCGGTTGTTTCTTAAAAACAAGACAACACTTCTGTAAATGGAAATGTAACCAGCACCTAAAATGCCACATAGTAAGCCGAGCAATGCAAACAGTGGAAGCTCGTTGACGGAAAATGCATCCGGGCGGAAGCTGGTTTGATAGAATGCACTTACAGTAACTGGAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086084 199 -  4500979 aacttACTGTCTTTGAAAGACCATTTTTGCATATCGATTGTTTCtcagaaacaaaacaacacTCCTATAAATAGAAATATAACCGGCGCCTAGAATGCCGCAGAATAAGCCGAGCAATGCAAAAAGTGGAAGTTCGTTGACGGAAAATGCATCCGGTCGGAAGCTGGTTTGATAGAATGCATTTACAGTAACTGGAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6054017 197 + 20921866 --CTCACtgtctctgaaaaatcatttttgcaTGTTGATTGTTTCTTAAAAACAATACAACACTTCTGTAAATTGAAATGTATCCAGCACCAAAAATGCCACTCAAAAGGCCGAGCAACGCAAAAAGCGGAAGTTCGTTGACAGAAAATGCATCCGGTCGGAAGCTCGTCTGATAGAATGCATTTACAGTAACTGAAACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2367183 197 +  4147112 --CTCACTGTCTTTGAAAGACCATCTTTgcatattgattatttctgagaaacaaaacaacacTTCTATAAATAGAAATATAACCAGCGCCTAAAATGCCACAGAAAAGTCCGAGCAATGCAAAAAGAGGAAGTTCGTTCACAGAAAATGCATCCGGTCGGAAGCTTGTTTGATAGAATGCACTTACGGTAACTGGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  357478 198 +   375229 AACTTACTGTCTCTGGAACACCATCTTTGCATACTGATTATTTCTCAGGAAAAGAACAACCAACCTGTACGTTGAGATGTAACCGGCACCTAAAATCCCGCAAAGaaggccaagcaatgcaaaaAGTGGAAGTTCGTTGACTGAAAATGCATCCGGGCGGAAGCTTGTCTGATAGAATGCGTTTACCGTAACTACata-
i caeJap4.Scaffold17084 I 32 C 0

a score=-779.000000
s ce10.chrX             4098661 9 + 17718866 CGAAATTTA
s cb4.chrX              9200063 3 + 21540570 ------Tgg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6054214 3 + 20921866 ------TGA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  357676 8 +   375229 -gaaaatta
i caeJap4.Scaffold17084 C 0 I 39
e caePb3.Scfld02_0      2367380 0 +  4147112 C
e caeRem4.Crem_Contig0  1086283 0 -  4500979 C

a score=-406.000000
s ce10.chrX             4098670 6 + 17718866 GTTGTA---
s cb4.chrX              9200066 9 + 21540570 gaaatattc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6054217 6 + 20921866 GTTGTA---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2367380 0 +  4147112 C
e caeJap4.Scaffold17084  357684 39 +   375229 I
e caeRem4.Crem_Contig0  1086283 0 -  4500979 C

a score=-2107.000000
s ce10.chrX             4098676 107 + 17718866 CCTAAAGTGGggtggcttagtgagtagtgagagcaatctagaggtttaggctaagatcatgcctcccctaggttcatctcaacagagaagtggagcaatccacggtc
s cb4.chrX              9200075  15 + 21540570 ----------------------------------------------------aaaatcgtGCC----------------------------------------GATC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2367380   0 +  4147112 C
e caeJap4.Scaffold17084  357684  39 +   375229 I
e caeSp111.Scaffold630  6054223   0 + 20921866 C
e caeRem4.Crem_Contig0  1086283   0 -  4500979 C

a score=0.000000
s ce10.chrX             4098783 44 + 17718866 gccagccacagtctcaaattcggacgtagcttaaactcaagcct
e caePb3.Scfld02_0      2367380  0 +  4147112 C
e caeJap4.Scaffold17084  357684 39 +   375229 I
e cb4.chrX              9200090  0 + 21540570 C
e caeSp111.Scaffold630  6054223  0 + 20921866 C
e caeRem4.Crem_Contig0  1086283  0 -  4500979 C

a score=212.000000
s ce10.chrX             4098827 38 + 17718866 aatggtaaccgcaccaggaatgtggtttctgactcgca
s caeRem4.Crem_Contig0  1086283 30 -  4500979 AATGGTTGAAAAACTAGGAACTTGTATTC--------A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2367380  0 +  4147112 C
e caeJap4.Scaffold17084  357684 39 +   375229 I
e cb4.chrX              9200090  0 + 21540570 C
e caeSp111.Scaffold630  6054223  0 + 20921866 C

a score=1056.000000
s ce10.chrX             4098865 11 + 17718866 aatATTTTAGA
s caeRem4.Crem_Contig0  1086313 11 -  4500979 TATATTTTACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2367380 11 +  4147112 AACGTTCCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  357684 39 +   375229 I
e cb4.chrX              9200090  0 + 21540570 C
e caeSp111.Scaffold630  6054223  0 + 20921866 C

a score=-6978.000000
s ce10.chrX             4098876 68 + 17718866 ACAACAAAAGCCTTTCAAATTTTTATAATCAGTATTTTTTGTAAAATTTCATATCAGTAACATCACAT
s caeRem4.Crem_Contig0  1086324  7 -  4500979 -----------------------TGTGATC--------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6054223 24 + 20921866 ACAGCTAAAGATT-------AGTTAGAATGT-------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2367391 22 +  4147112 AGAAATAAAGATT---------CTAAAATCT-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  357684 39 +   375229 I
e cb4.chrX              9200090  0 + 21540570 C

a score=-389.000000
s ce10.chrX             4098944 6 + 17718866 CAGCTC
s cb4.chrX              9200090 6 + 21540570 CAGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086331 3 -  4500979 ---CTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2367413 1 +  4147112 -----A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  357684 39 +   375229 I
e caeSp111.Scaffold630  6054247 0 + 20921866 C

a score=445419.000000
s ce10.chrX             4098950 420 + 17718866 ACCTTCCGTTTCAACAACATATGCTCTCAACAACCGAATTGTGGTTGCTCCACAACATGCTGCAAAGAAGCCTCTCCAGTAACTTCTCACCGAAAAATACATTGTCGTTACTTCAATCGAGAACAGCACTCCGCCGACCGGTGAGCTGAATGTGCACGCGACGCCGACTGCACATGCAGCAGCTAGACATTCCATTCTTCTGCTCTCCTCACGATATGCAGAATCGAATTTCGCTGCTAGAAGGCACATTTGGTTGGCAACCACCGAGGCGATGTGCACGAACGGTCCCATTTTGCCGATTGGGACACCGCTTCCCAATGCCATTGCTACTCCGAATATTTTGGAAACCAGTGTTTTTAGTGTTAGATAGTCAACCAGAATGACTCCGCGAATGATCGTTTTCATTTCCGGTATTCCAGA
s cb4.chrX              9200096 420 + 21540570 ACCTTCCGTTTCTACTACATAAGCTCTCAATAATCGAATAGTTGTCGCTCCACAACACGCTGCGAAAAAACCCCTCCAATAGCTCCGTACAGAAAAATACATCGTTGTGACTTCAATCGAGAACAATACTCCTCCAACTGGCGAGCTGAAAGTGCACGCGACGCCGACTGCACATGCAGCAGCTAGACATTCCATTCTTCTGCTCTCCTCACGATACGCAGAATCGAATTTCGCTGCTAGTAGGCACATTTGGTTGGCAACCACTGAGGCGATATGCACGAACGGTCCCATTTTACCGATTGGGACACCACTGCCAAGCGCCATCGCCactccgaaaattttggagacaAGTGTCCGGAGAGTTAGGTAATCTACCAAAATCACTCCTCGaataattgttttcatttCTGGTATTCCCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086334 420 -  4500979 ACCTTCTGTTTCCACAACATAAGCTCTCAGCAATCGAATTGTAGTTGCTCCACAACAGGCAGCAAAGAAACCCCTCCAATAGCTTCTCACAGAAAAATACATAGTTGTTACTTCAATTGAGAAAAGTACTCCTCCAACTGGTGAACTGAAAGTACAAGCGACGCCTACTGCACATGCAGCAGCTAAACATTCCATTCTTCTGCTCTCCTCACGATACGCAGAATCGAATTTCGCTGCTAGAAGGCACATTTGGTTGGCAACCACTGATGCGATGTGTACAAACGGTCCCATTTTCCCAATAGGTACTCCACTTCCCAATGCCATTGCTACTCCGAATATTTTGGATACAAGGGTGCGAAGAGTTAGGTAATCCACCAGAATCACACCAcgaattattgttttcatttctggTATTCCCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6054247 420 + 20921866 ACCTTCAGTTTCAACAACATATGCTCTCAACAATCTGATAGTGGTCGCACCACAACAGGCAGCAAAAAAGCCCCTCCAGTAACTTCTGACCGAAAAGTACATTGTTGTTACTTCAATAGAAAACAGTACTCCTCCAACGGGTGAACTGAAAGTGCAAGCGACGCCGACTGCACATGCAGCAGCTAGACATTCCATTCTTCTGCTTTCCTCACGATATGCAGAATCGAATTTCGCTGCTAGAAGGCACATTTGGTTGGCGACCACCGATGCAATGTGAACAAACGGTCCCATTTTACCGATTGGAACCCCACTTCCCAACGCCATGGCAactccgaaaatttttgagacaaGTGTTCGAAGAGTTAGATAATCCACCAATATAACTCCTCGgattattgttttcatttctggtATTCCCGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2367414 420 +  4147112 ACCTTCGGTTTCAACAACATATGCTCTTAATAGTCTAATAGTGGTTGCCCCACAGCAGGCAGCGAAGAAGCCCCTCCAGTAACTCCTTACGGAAAAGTACATCGTAGTTACTTCGATAGAAAACAGTACTCCTCCGACAGGGGAACTGAAAGTGCATGCGACGCCGACTGCACATGCAGCAGCTAGACATTCCATTCTTCTGCTCTCCTCACGATATGCAGAATCGAATTTCGCTGCTAGAAGGCACATTTGGTTGGCAACCACTGATGCGATATGGACGAATGGTCCCATTTTCCCAATAGGAACACCACTTCCCAATGCCATTGCTACTCCGAAGATTTTCGAGACAAGAGTTCGAAGTGTGAGATAGTCAACCAGAATCACTCCACGgattattgttttcatttctggtATTCCCGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  357723 420 +   375229 ACCTTCAGTTTCAACCACATATCCTCTCAATAATCGAATAGTGGTGGCACCACAACAAGCAGCAAAGAAACCCCTCCAGTAACTTCTCACTGAGAAGTACATAGTAGTGACTTCTATAGAGAAAAGTACTCCACCGACAGGAGAGCTGAAAGTACACGCGACACCAACCGCACATGCAGCAGCTAAACATTCCATTCTTCTGCTCTCCTCGCGATATGCAGAATTGAACTTCGCTGCTATTAGGCACATCTGATTGGCCACCACTGAGGCAATGTGTACAAAAGGTCCCATTTTTCCTATCGGTACACCACTTCCTAAAGCCATTgcaattccaaaaattttcgaaacaagagTTTTGAATGTTAAATAGTCCACAAGAATCACACCACGGATAATTGTTTTCATCTCGGGGATACCGGA
i caeJap4.Scaffold17084 I 39 C 0

a score=-24721.000000
s ce10.chrX             4099370 100 + 17718866 ACCTGTAGAAT--ATTAGAAAAATAACATGTTCAAAAAAACGAAAGGTTTATTGTTTTTATTTATAAAACTGTTTGCTTTGAATTGTTTTCTTAGATTCAAT
s cb4.chrX              9200516  93 + 21540570 tcctaaaaaacaaatttcaaggattttcaGTATCATTCAATAAGAAATGCA-agaacgtattttt----cagttgattcttggccatttt----gaccattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086754  22 -  4500979 GCCTATAAAACACAT------------------------ATGAGAA--------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2367834  27 +  4147112 TCCTATA------ATTGCTCGAATTGGTAATTT---------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  358143  28 +   375229 ACCTGATGGGCGAAAATTATAAATTAAT--------------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6054667   0 + 20921866 C

a score=-3164.000000
s ce10.chrX             4099470 131 + 17718866 TTGAGACAATTTTACGTATACTCGTAATTT----------------------------ATT------------------------AAACAGAAAATTTCTATT-------------------------------TTTTTGGGCAACAAAGTGAGCACTGTTTTATAGTCTAGAAATACGGTTCTGGTTTTTACGATATGCTTCAAAAAAGTCTC
s cb4.chrX              9200609 205 + 21540570 tcaggagaatGGAGCCCGTATGTCaaatttccgatcactttgaaaaaaaaaatcaaaaattcacgTTTTTAGTACAAATGGCCCGAAACA-AAAATGTCTTTTCGAAATCGTCAAATATCCGTAAAACGAGGCACTTTTAAGAAATTCTGTGCATGCAAAGTTTTTATCTA-------TGTTTTAAACCCTCCAATCT-TTtcagagatattaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2367861   0 +  4147112 C
e caeJap4.Scaffold17084  358171   0 +   375229 C
e caeSp111.Scaffold630  6054667   0 + 20921866 C
e caeRem4.Crem_Contig0  1086776   0 -  4500979 C

a score=-3919.000000
s ce10.chrX             4099601 34 + 17718866 AACTAAACGATTCGTAAAACTTCTACTCTTGGAA
s cb4.chrX              9200814 27 + 21540570 aaacagtcgagctctag-------actcctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1086776  4 -  4500979 ------------------------------GAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2367861  9 +  4147112 -------------------------GACCAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  358171  0 +   375229 C
e caeSp111.Scaffold630  6054667  0 + 20921866 C

a score=-11042.000000
s ce10.chrX             4099635 21 + 17718866 AT-------------------CATGT-TTAACACAATTCTT
s cb4.chrX              9200841 37 + 21540570 atggttaaaatgGCCGAAAACCAT----TAATAcggttttg
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0  1086780 19 -  4500979 ATGGATAGA------------CAT----TGTTACA------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      2367870 10 +  4147112 CTCGATG--------------CAT-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  358171 13 +   375229 -------------------ATCATGTCTTGTT---------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6054667  0 + 20921866 C

a score=342449.000000
s ce10.chrX             4099656 466 + 17718866  
s cb4.chrX              9200914 468 + 21540570  
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1086801 469 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6054667 456 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2367880 462 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  358184 521 +   375229  
i caeJap4.Scaffold17084 C 0 I 45

a score=-7178.000000
s ce10.chrX             4100122 35 + 17718866 TACAAGGC---GTGTTCTCTTGGTGGAGAAG-----GTG----------TAAC
s cb4.chrX              9201382 39 + 21540570 aaaaaaaa--cgtat-------aCGAAAGAAACTGTGTGAGTCA-----TTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1087270 33 -  4500979 aacaaaaaatcgaaa-------gtGGGAGGA--------AGTCA-----TTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6055123 33 + 20921866 taaaaaaa---gaga-------ataaaaggt-----gtgattca-----tctt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2368342 37 +  4147112 gaaaaaca---aaat-------a-aaaagaa-----gtgaTTCATTCCTTCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  358705 45 +   375229 I

a score=180406.000000
s ce10.chrX             4100157 484 + 17718866  
s cb4.chrX              9201421 485 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1087303 473 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6055156 550 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2368379 579 +  4147112  
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17084  358750 448 +   375229  
i caeJap4.Scaffold17084 I 45 C 0

a score=-2760.000000
s ce10.chrX             4100641 12 + 17718866 G----CGGGCGGCGGC
s cb4.chrX              9201906 16 + 21540570 ACATTTCGGAGACAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1087776 11 -  4500979 -----TCGACGACGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6055706  5 + 20921866 -----------ACGGC
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  359198  4 +   375229 ------------CATT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2368958 12 +  4147112 I

a score=175.000000
s ce10.chrX             4100653 6 + 17718866 -GTCGAC
s cb4.chrX              9201922 6 + 21540570 -GTCGAC
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1087787 6 -  4500979 -GCCGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6055711 6 + 20921866 -ACGAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2368970 6 +  4147112 -GTCGAC
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17084  359202 6 +   375229 TTTCGG-
i caeJap4.Scaffold17084 C 0 C 0

a score=60295.000000
s ce10.chrX             4100659 113 + 17718866 CGACTTTATCACCGATTCGAA-CCGTGTGATGTCAGCTCTGC-----ACAGTCTCACCCTCGGTTGAGTTTGAAACAATTTGATCAGTTGCAATCTTTGTGTTTCT-CTGATCCGATTT-G
s caeRem4.Crem_Contig0  1087793 114 -  4500979 CGACTCTATTACAGAGCGGAACCCGTGTGATGTCAGCTCCGT-----GCGGTCTCTCTCC--ATCGAGTTTGAAACTATTTGATCAGTTCCGATCTTTGTGTTCTTATTGATCTGATTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6055717 112 + 20921866 CGTCTCTATTACAGAGCGGAA-CCGTGTGATGTCAGCTCTGT-----GCGGTCTCTTCCA--GTTGAGTTTGAAACTATTTGATCAGTTCCGATCTTTGTGTTCTTCCTGATCCGATTT-G
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2368976 111 +  4147112 CGACTCTGTAACTGAGCGGAA-CCGTGTGATGTCAGCTCTGT-----GCGGTCTTTTCT---GTTGGGTTTGAAACTATTTGATCAGTTACGATCTTTGTGTTCTTATTGATCCGATTT-G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  359208 115 +   375229 TGACTTTATTACGGAATGGAA-CCGTGTGATGGCAGCTCAGCTCGCAGCGGTTTCATT----ATTCAGTTTGAAACTATTTGACCAACGATGGTCTTTGTTCTTCACGTGATCGGATTT-G
i caeJap4.Scaffold17084 C 0 I 474
e cb4.chrX              9201928  14 + 21540570 I

a score=6884.000000
s ce10.chrX             4100772 24 + 17718866 CTTTGTGTGCACGTGAATCTGGTG
s caeRem4.Crem_Contig0  1087907 22 -  4500979 --TTTTGGGCACGTGAATTGGGTG
i caeRem4.Crem_Contig0  C 0 I 468
s caeSp111.Scaffold630  6055829 22 + 20921866 --TTATGTACACGTGAATTTGTCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2369087 22 +  4147112 --TTCCGAGCAcgtgaattttgtg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928 14 + 21540570 I

a score=-83.000000
s ce10.chrX             4100796 7 + 17718866 GAATGCA
s caeSp111.Scaffold630  6055851 7 + 20921866 AAATGCA
i caeSp111.Scaffold630  C 0 I 381
s caePb3.Scfld02_0      2369109 3 +  4147112 aaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928 14 + 21540570 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=-235.000000
s ce10.chrX             4100803 173 + 17718866 AGGTCTGACGTAGTCCTCCACTGTTTTCGAGTTTTGAAACACTTTTCAAAAGATTAGCTAACCCGCAGTTGAATCTTAACAATTGAATTATATCTTTACAAAATGCAATATCTGAGAAATATGTATATATCAACCTCATTAGGATTGCCCCACAATGTTCTTGATGTTTCTGA
s caePb3.Scfld02_0      2369112 119 +  4147112 -----tgatATAGGtttca--------tgagtttttgaattgtttttaaa---------aacacg-----------------ttgtatttaatttttccaaaa---aacttttgagtg--GTGTACCATCCGACCAGATCAA---------ATAACATGCTT-ACCCTTCTGA
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928  14 + 21540570 I
e caeSp111.Scaffold630  6055858 381 + 20921866 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=0.000000
s ce10.chrX             4100976 46 + 17718866 GCGTATGTATAACAAATTTTTAAAATATTTAAACATAAGTCTACCT
e caePb3.Scfld02_0      2369231 25 +  4147112 I
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928 14 + 21540570 I
e caeSp111.Scaffold630  6055858 381 + 20921866 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=-1097.000000
s ce10.chrX             4101022 300 + 17718866 AGAATCCAAATAGTGATCTAAGATTTGTGGTGTATTTGTTTTATTTTCTTTTCCTGGGCGCGCGGAGTTTGTTTTCGATTTTTATAAGCAAATATGTAATTGGCAATATTTTATCCGTTTAAACAGTTTAAACCAAATTTAAACAAATTTAGGCAAATAAGTATTATTAAAACTTACCTAAAATATTCCACACTGACGATATTCCTTTTAAAAAAACACTTTTCT---------TTAAAGTTTATGCCATAGCCAACTAGTGTTCCATTTGCAAAAAATAT-------AGTTCTGCTACAAAAATCCGCTACAAAA
s caePb3.Scfld02_0      2369256 198 +  4147112 agaaaacgaattgaaattta------------taattgttttttct-----------------ggagctttttt---------------gaatatggA----------------------------TTCACATCACATTCACAC------------------------------TTTCTGAATTGTTtctcattg------tttcttttctgaattcgtAATTCTCCGTTTTGATTATACGtttcgtcat----------ttttccattcccGAAATTGATGCCCCTGAGTTTTGTCAAAAAAGGTAGCTGTAAAA
i caePb3.Scfld02_0      I 25 I 139
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928  14 + 21540570 I
e caeSp111.Scaffold630  6055858 381 + 20921866 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=0.000000
s ce10.chrX             4101322 198 + 17718866 CTAACTCACATTTTGGCTAGTTCCTGTTACTCACCACAACAGTCTTTCCCAGCGGTACGGTTTTCTAGCCCGCAAATTTTAATTTATGCAGTTTCGATTTGGGCTCAGTCAATGAAACAGTTTGGCGGATTTTTTTTTGCGCAGAGGTTACCAAAATAGTTTTCAAAGTTCACGAAAAAATAAAAATGTTAACACTAT
e caePb3.Scfld02_0      2369454 139 +  4147112 I
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928  14 + 21540570 I
e caeSp111.Scaffold630  6055858 381 + 20921866 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=-1006.000000
s ce10.chrX             4101520 201 + 17718866 GTTCTGCGTTGTTTAACAAATAATCAGGCACCCGCATCGTGTTGGGTACATTATTTGACATGACAATCTTTCTTCAAAATCAGGTAAATAACATTTCATAGGCATAGTCAAACTTTTGAACTGTTTTTTTTTATTTGAAATTGTATGAAAAAAGTTTTATTATAAGATCCAACCAATGATAATTCGTTTTGAAAAAACTGC-----
s caePb3.Scfld02_0      2369593 126 +  4147112 GTTTTTCATTGGTT-----ATAGTCAA---------------TGACTGAATGGTTTGAC-------TTTGTATTCTGAATgagtcaaaaaaca----------aaagtaaaaa----gagtttattatttttaccT-------------------------------TTCAACCAAT--------GTTTCAAAGAATATATGAATA
i caePb3.Scfld02_0      I 139 C 0
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928  14 + 21540570 I
e caeSp111.Scaffold630  6055858 381 + 20921866 I
e caeRem4.Crem_Contig0  1087929 468 -  4500979 I

a score=546.000000
s ce10.chrX             4101721 1 + 17718866 A
s caeRem4.Crem_Contig0  1088397 1 -  4500979 a
i caeRem4.Crem_Contig0  I 468 C 0
s caeSp111.Scaffold630  6056239 1 + 20921866 A
i caeSp111.Scaffold630  I 381 C 0
s caePb3.Scfld02_0      2369719 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  359323 474 +   375229 I
e cb4.chrX              9201928 14 + 21540570 I

a score=53404.000000
s ce10.chrX             4101722 117 + 17718866 TCATTACGTCAAGTATATACA---AAAAT-------------TAA-AAAACATCATTTCTGAAATCAAGTTGTGATTTTGCGAACAGCTTTCACCACACAGCAGTTGTCTGGTTTCAAGAAGCATTGATCCCAT
s caeRem4.Crem_Contig0  1088398 113 -  4500979 tCTTTCCGTCGAGTATATACAGACATAAT-------------AAATCAATTATCATTT--------AGTTGGTCAACTTCCGAACAGCTTTGACAACACAGCAGTTGTCTGGTTTCAGGAAACAAGTCTCCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6056240 111 + 20921866 TCGTTTCGTCGATAAtatacaga-aaaag-------------aga-cagcTATCATTC--------AGTTCGTCAACTTCCGAACAGCTTTGACCACACAACAGTTATCTGGTTTCAGACAGCAGTTCTCCCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2369720 112 +  4147112 TCTTTCCGTCGAGTATATACAgacaaaat-------------caa-gaatttaGATTT--------AGTTGGTCAATTTCCGAACAGCTTTGACCACACAGCAGTTGTCTGGTTTCAAGAAGCAGTGATCCCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  359797 124 +   375229 TCCTTCCGTCAGTTATATACAGataaaattttcttgaaaagaaaa-taaataaaatt---------aattggAGATTTTTCGAACAACTTTGACAACACAGCAATTGTCTGGTTTCAAGAAGCAGTTTTCCCAT
i caeJap4.Scaffold17084 I 474 C 0
e cb4.chrX              9201928  14 + 21540570 I

a score=12158.000000
s ce10.chrX             4101839 33 + 17718866 ---------------------TTTGC------TTTGGCAGAACTGAAAAAAATCATTTCA---------------
s cb4.chrX              9201942 32 + 21540570 ---------------------TTGGT------TTTGGCGACACTGTAAATGGA-Attcct---------------
i cb4.chrX              I 14 I 7
s caeRem4.Crem_Contig0  1088511 32 -  4500979 ---------------------TTGGC------TTTGGCAACACTGTATAAAGA-ATCCCT---------------
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold630  6056351 32 + 20921866 ---------------------TTTGT------TTTGGCAACACTGTATAAAGA-ATTCCT---------------
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2369832 32 +  4147112 ---------------------TTGGT------CTTGGCAACACTGTATAAAGT-ATTCCT---------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  359921 74 +   375229 TTCAGGAAACAGTTCTCCGTAGTGGTAACACATTTGGTGGCACTAAATATaga-ttttcttaaaaattcgTAGCA
i caeJap4.Scaffold17084 C 0 C 0

a score=-2560.000000
s ce10.chrX             4101872 29 + 17718866 --------TTAACATATATTATTTAATTTTCATTTAA
s cb4.chrX              9201981 28 + 21540570 --------tcagagtaaaTTTGTCGACTTTA-AACAA
i cb4.chrX              I 7 I 4
s caeSp111.Scaffold630  6056390 29 + 20921866 --------TCGGAgtaaaagtgtcaactaggTCATAA
i caeSp111.Scaffold630  I 7 I 2
s caePb3.Scfld02_0      2369871 29 +  4147112 --------TCGGAGTAACAATGTCAACTTCACCAGAA
i caePb3.Scfld02_0      I 7 I 2
s caeJap4.Scaffold17084  359995 29 +   375229 GTGTGATGCAAAAATAAATCACTTACTTG--------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1088543 39 -  4500979 I

a score=212687.000000
s ce10.chrX             4101901 496 + 17718866  
s cb4.chrX              9202013 526 + 21540570  
i cb4.chrX              I 4 I 8
s caeRem4.Crem_Contig0  1088582 485 -  4500979  
i caeRem4.Crem_Contig0  I 39 I 8
s caeSp111.Scaffold630  6056421 477 + 20921866  
i caeSp111.Scaffold630  I 2 I 42
s caePb3.Scfld02_0      2369902 487 +  4147112  
i caePb3.Scfld02_0      I 2 I 7
s caeJap4.Scaffold17084  360024 511 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-5922.000000
s ce10.chrX             4102397 35 + 17718866 GGTTCCGTTTTG----GGTGTATTCT----------TTGTCGAATTGGG
s cb4.chrX              9202547 44 + 21540570 GCCCCCGCTTCCTGTGGGGGTATTCCGTTAA-----TCATCAAACCGTG
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0  1089075 30 -  4500979 ----------------AAAGAGTTCCTTGAATG---TTACCAAACCGGA
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0      2370396 38 +  4147112 AGCCGAGCTTCAT---------TTCCATTCTTA--TTAATCGAACTGGG
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084  360535 43 +   375229 ------GCTTTTCAATCAAGTGTTCGCTTGCAAAGCAGTCCAAACCGGA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6056898 42 + 20921866 I

a score=27954.000000
s ce10.chrX             4102432 56 + 17718866 TGCATTATCCGCCGTGATCTGCTTCAGGTCAATGACATCATG--TTGAAGAATCATTG
s cb4.chrX              9202591 57 + 21540570 CGGCTAA-TCTATCTGATCTATCAGAGTCCAATGACATCATCCTCCAAGGGGTCATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1089105 56 -  4500979 CGACTAATTCGGCTTGATCTATCAGAGTTCAGTGACATCATC--ACAAGGGGTCAATg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6056940 54 + 20921866 CGGCTTA-TTGGT-TGATCTGTGAAAACGCAATGACATCATT--GAACGAGGTCAATG
i caeSp111.Scaffold630  I 42 C 0
s caePb3.Scfld02_0      2370434 56 +  4147112 CGGCTAATTTGGTATGGTCTGTCAAAGTTCAGTGACATCATC--AAAAGGGGTCAAtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  360578 52 +   375229 TGAATAATGCGAGCTGATCTGTCAAAGTTTAATGACATCATC------AGGGTCATTG
i caeJap4.Scaffold17084 C 0 I 3855

a score=20893.000000
s ce10.chrX             4102488 45 + 17718866 ATATATCAGAATTTTCTCGAT------AAGCTTTGAACAGGA-TATGATAAG
s cb4.chrX              9202648 51 + 21540570 ACTTCTCAAATATTTCTCGAT-TTCATTAGCATAGAACTGGATTTTGATAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1089161 51 -  4500979 acttctcaaaattttctcgatCTCCATAATCTTCGAACAGGA-TTTGATTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6056994 51 + 20921866 ATTTCTCAAAGGTTTCTCGATCTTTTTTAACTACAAACAGGA-TTCGATAAG
i caeSp111.Scaffold630  C 0 I 2036
s caePb3.Scfld02_0      2370490 50 +  4147112 acttctcaaaattctctcGATC-CCATAAGCATTGAACAGGA-TTTGATAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  360630 3855 +   375229 I

a score=-640.000000
s ce10.chrX             4102533 11 + 17718866 ATATTGGTCAT------
s cb4.chrX              9202699 11 + 21540570 AAGCGGGTCAT------
i cb4.chrX              C 0 I 1281
s caeRem4.Crem_Contig0  1089212 11 -  4500979 CCGCCAGTtat------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2370540 17 +  4147112 CCGTCAGATATCTTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=-966.000000
s ce10.chrX             4102544 12 + 17718866 ATGCTTTCAATT-
s caeRem4.Crem_Contig0  1089223 12 -  4500979 cttcttctgttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2370557 12 +  4147112 -GTGTTTTGCATT
i caePb3.Scfld02_0      C 0 I 10237
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9202710 1281 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=197.000000
s ce10.chrX             4102556 7 + 17718866 TGTCTCT
s caeRem4.Crem_Contig0  1089235 7 -  4500979 ttccttt
i caeRem4.Crem_Contig0  C 0 I 973
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9202710 1281 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=0.000000
s ce10.chrX             4102563 1006 + 17718866  
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9202710 1281 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I
e caeRem4.Crem_Contig0  1089242  973 -  4500979 I

a score=1953.000000
s ce10.chrX             4103569 121 + 17718866 TGAGTTTTTCAAGAATACATCCTTGTTCGCATGAAGCCAATCAAAAAAGGCGACTGCCAAAGATTTGAGTTCGGCAATAGTTGTTGGTACTTTGAGAATAATTTCTTCACCGATCTTGTTC
s cb4.chrX              9203991 121 + 21540570 TGAGCCTTTGAAGAAGACCTCCTTGTGAGCTTTCAACCAGTTGAAAAAGCGGAATGCCAGCTCTTTCATCTCTTCGATGTTCTTTGGCGGTCGAATAGGGTCTCCGTGGTGGACAACTTTC
i cb4.chrX              I 1281 C 0
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I
e caeRem4.Crem_Contig0  1089242 973 -  4500979 I

a score=6336.000000
s ce10.chrX             4103690 128 + 17718866 TCATTTAGTCTATCAAACCACTTATTGATATACTCATTGCTCGGTCCCATTCGAGTTAGCAACGACTGGTATAGCACATCCACCATTCCTTCAGTGACATCATTTGGCAGTATGTGCTTTGGAATTTT
s cb4.chrX              9204112 128 + 21540570 TCATTGAGCTTCACGAACCAGTGagagattttcacatttcttgaAATCATTCTCTCCAAGAGTCCAATATAAAGAGCATCAACCATAGCAGGAGTTATTTCGTCCGGCATGATACTGTTTGGGAGCTT
i cb4.chrX              C 0 I 446
s caeRem4.Crem_Contig0  1090215 128 -  4500979 TTGTTGAGTCTCTCAAACCATGCAACAATTTGTGGATTATTTGTGTTGATTCTGGTCAAGAGACATTCATACAGTGCTTTGAGCATTTCGAACGTGATTTGTTGTGGTAAGATATCTTTTGGAATTTT
i caeRem4.Crem_Contig0  I 973 C 0
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=-655.000000
s ce10.chrX             4103818 78 + 17718866 GATAGATATTGATCCTGCTTCCTAAAAA---TGTTGATAGAATAAGTGTACTTCCAATCTAATGTGACGAAAATTGACCTA
s caeRem4.Crem_Contig0  1090343 70 -  4500979 GTGACGGAAAGCTCCAAtctataaaaaaatttcttgataA---------ACTTCCTAGGTGCAGTCACAAACCTCAA--TA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9204240 446 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=7197.000000
s ce10.chrX             4103896 211 + 17718866 CTTTCTGCGATCCTTCGCCAAGAACCATTTGACACAATCCCTCAAAGATATGTTTCTTTTCGTAG------GTTGCGCGAAGCATCACCTGGCCCACGAGATAATAAAATCGCAGATTCTGAAAATAAAAAGATAACTTTTATTCTCAATATAAATCAATT-TACCCTTTGATTTACAGGAACCTGGGCAACTTGCAATAAAATGTCCATCGGGTTTT
s cb4.chrX              9204686 218 + 21540570 CCTCTTCCATTCTCTCTCCTAATACCAACTGGCACACGTCCTTCGATGCACGGTGATCCCTGTTGTATGTTGTTGCACGAAGCATGACCTGTCCAGCAAGGAAATAGAAACGAAGGTTCTTAAAAGTTAtaataacatttttaatgCGGTGCCACATGGTTATACCCTCTCATATCTCGGAATATCCGCCATACGCAAAAGGATGTCAACCGGATTTT
i cb4.chrX              I 446 I 8797
s caeRem4.Crem_Contig0  1090413 206 -  4500979 --------GCTTTAGAGCTCATGGCCATACAACGAATGTCATccaaaatgtggttttttctACGGT---CTGTAGCATTGAGCATTATTTTTCCAGCCAAATAGTAGAACTGAGCAgtctgaaagaaaacaatcGAATGTGTTCCACAGTTCAAAGTAGCT-CACTAGTTGGTCGGTTGAAATATTTCCCATGCGGAAGAGGAGATCAATCGGATTTT
i caeRem4.Crem_Contig0  C 0 I 2920
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=0.000000
s ce10.chrX             4104107 2735 + 17718866  
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9204904 8797 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I
e caeRem4.Crem_Contig0  1090619 2920 -  4500979 I

a score=112.000000
s ce10.chrX             4106842 8 + 17718866 CCATTCAA
s caeRem4.Crem_Contig0  1093539 7 -  4500979 CCATTCG-
i caeRem4.Crem_Contig0  I 2920 C 0
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e cb4.chrX              9204904 8797 + 21540570 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=781.000000
s ce10.chrX             4106850 21 + 17718866 ACTTTCATAGTTAGGTTCTC------------------A
s cb4.chrX              9213701 38 + 21540570 ACTTTCACAGTTA-TTGCTCATTACAACTTTAAAcctga
i cb4.chrX              I 8797 C 0
s caeRem4.Crem_Contig0  1093546 19 -  4500979 -TTTTTACAGTTA-TTGCTT------------------A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2370569 10237 +  4147112 I
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=-2568.000000
s ce10.chrX             4106871 10 + 17718866 TTATTACCGC---
s cb4.chrX              9213739 10 + 21540570 tgaaaaaaaa---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1093565 10 -  4500979 TGAGTGAAGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2380806 10 +  4147112 ---TTGTTACCTC
i caePb3.Scfld02_0      I 10237 I 2
e caeJap4.Scaffold17084  360630 3855 +   375229 I
e caeSp111.Scaffold630  6057045 2036 + 20921866 I

a score=-3317.000000
s ce10.chrX             4106881  9 + 17718866 ---TAACAAAGC
s cb4.chrX              9213749 11 + 21540570 cactcatAAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1093575  8 -  4500979 CAT---CAAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6059081  9 + 20921866 ---TGATAACTC
i caeSp111.Scaffold630  I 2036 C 0
s caePb3.Scfld02_0      2380818  9 +  4147112 ---AGAcagagc
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  360630 3855 +   375229 I

a score=272026.000000
s ce10.chrX             4106890 430 + 17718866  
s cb4.chrX              9213760 499 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1093583 437 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6059090 428 + 20921866  
i caeSp111.Scaffold630  C 0 I 5
s caePb3.Scfld02_0      2380827 435 +  4147112  
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084  364485 410 +   375229  
i caeJap4.Scaffold17084 I 3855 C 0

a score=-4178.000000
s ce10.chrX             4107320 8 + 17718866 -AAAGATCG
s cb4.chrX              9214259 8 + 21540570 -gcaaacta
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1094020 6 -  4500979 -ATACTC--
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  6059523 5 + 20921866 -GAAGA---
i caeSp111.Scaffold630  I 5 I 4
s caeJap4.Scaffold17084  364895 7 +   375229 aaaatgt--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2381262 9 +  4147112 I

a score=90543.000000
s ce10.chrX             4107328 265 + 17718866 -----CGTCATCCTCCAATTATTTTGCTTTTTCGTCTATCAATTACTAAAACACCAC--------TGCTTAT------------CGCCACATGAC---AGAGTAATTGTAACAATGTGCAACCTATTT------TTGTTTCAGGAT-----ACCTCTCA-GTTGAT-TTCAAGGAGATGCGATGTACGTCGGTGTCAGCTAGTCTTTTCTTTTTTTA---------TTTATCAATCCGCAATGTATTCACTTATACTGCACATATCGAAGACCCTTCTAGAATAGGTAGG--CCTT-------TTTGTTTTCAATCGTTGTT-------CT-
s cb4.chrX              9214280 263 + 21540570 -----taacCTAATC----------ACTCTTTTT-------GTTATTAAGC-------CAA----TGTTTATTGACTAGCCATCTGCCACATGTCCACATGAAAATTGTAACAATCAGC-ACCTATTT------TTGTTGCAGGACGGCCAGACTCTCA-CTCATTCCCAAAGGAGATGCAATGTTCGTCGGTGTCAGCTAGTCTCCtgttcatctt---------tttttcctttcccaATGTATTAACTTATACTTCACATATCGAGGACCCGTCTCGAGTCGGT-----TTgtaa-----tttattttcattt-tcttt-------ga-
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0  1094030 263 -  4500979 -----TATTATAATCG-------TAACTTTTCTT---ACCAATTACCAAACCGCCACTCAA----TGTTTATTTACTGATTTTCCACCACATGTC--AATTGTTATTGTAACAATCACC-ACCTATTT------TTGTTGCAGAAT-----CACGCTCA-CTCGTT-CCGAAGGAGATGCGATGTTCGTCGGTGTCAGCTAGCCTTctcttcattta---------tttttcagttcccaATGTATTTACTTATACCTCACATATCGAAGATCCATCTAGAGTTGGTAAG--TTGaca-----tttattttc-----------------ga-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  6059532 257 + 20921866 -----CTTCATAGTAG--------------TTTTCACACCTATTACCAAACCGCTAGTCAATGTTTATTTACTTACTGATTTGCGACCACATGTC---ATTAGGATTGTAACAATGAGC-ACCTATTT------TTGTTGCAGGAT-----CAGTCTCGCCCCGTT-TCAAAGGAGATGCGATGTTCGTCAGTGCCAGCTAGCCTCatcttcattta---------tttctctgTACCAAATGTATTCACTTATACGTCACATATCGAGGACCCTTCTAGAGTTgg----------------------tttgtatt-tttct-------ta-
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2381271 263 +  4147112 -----CGTCATCGTCG-------TTACTTTTTTCAACACCTATTACTTAACCGCCACTCAA---ATGTTTATTTACCGATTTGCCGCCAC--------------ATTGTAACAATCAGC-ACCTATTT------TTGTTGCAGGAT-----CAGTCTCA-CTCGTT-TCAAAGGAGATGCGATGTTCGT------CAGCTAGTCTgcttttcattta---------tttttctgttccaaatgtATTCACTTATACCTCACATATCGAAGATCCTTCTAGAGTTGGTTAG--TTgc-------ttcactttgtttt-tttttcaaaaaata-
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084  364902 272 +   375229 GGATACGTTTtgatca------tttatttatttacatttctaaagaaaaacaacaaaacaattcacatttat---------------------------------ttttagcaa--aac-agtttttttcttaatttttgcagGAT---------TTCACATAGAT-CCCGGGGAGATGCGATGCTCTTCGGTTTCGGCTAGTCTACTGTTTATTCAAAACTTGTTGTTATTTATTCCAAGTGTTTTCAATTATTCTGCACATATCGAAGATCCTTCAAGAATTGGTATGCACTGTgacacattttatttttattt-tttgt-------ttt
i caeJap4.Scaffold17084 C 0 C 0

a score=561.000000
s ce10.chrX             4107593 46 + 17718866 CAAGCAATGCACCAGCAAA--ATTGCAACAT-GTGTGATATC--TCGAATC
s cb4.chrX              9214543 30 + 21540570 aaat--------ttctcat--tttgcaACAT-GTGTG----------GATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1094293 33 -  4500979 aaag-------------aa--acgGAAACAT-GTGTGATTTC--TTTGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6059789 47 + 20921866 GAATCAATG--Ctgcaaaa--ttgaaaacatcgTGTGAGATTGGCTTGATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2381534 45 +  4147112 aaaacaat---ctGCTAAATCTTGGCAACAT-GTGTGATATC--TCTGATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  365174  0 +   375229 C

a score=3531.000000
s ce10.chrX             4107639 39 + 17718866 ATATGAGAAGCGACACATGTTCATAGGTGTTTT-------ATTGAT
s cb4.chrX              9214573 43 + 21540570 ACATG---GAAGACATATGTTCAGATGTGATAATGCTGAGATTTAT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1094326 36 -  4500979 TCATT---TGCAACATATGTTCAATGGTGATAA-------ATCGAT
i caeRem4.Crem_Contig0  C 0 I 63
s caePb3.Scfld02_0      2381579 30 +  4147112 ATACG---GACAACATATATTCAAGAG-------------ATTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  365174  0 +   375229 C
e caeSp111.Scaffold630  6059836  0 + 20921866 C

a score=-556.000000
s ce10.chrX             4107678 2 + 17718866 AA-
s cb4.chrX              9214619 2 + 21540570 -AT
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_0      2381609 2 +  4147112 AA-
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold17084  365174 0 +   375229 C
e caeSp111.Scaffold630  6059836 0 + 20921866 C
e caeRem4.Crem_Contig0  1094362 63 -  4500979 I

a score=-6266.000000
s ce10.chrX             4107680 601 + 17718866  
s cb4.chrX              9214621 287 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2381611  94 +  4147112 I
e caeJap4.Scaffold17084  365174   0 +   375229 C
e caeSp111.Scaffold630  6059836   0 + 20921866 C
e caeRem4.Crem_Contig0  1094362  63 -  4500979 I

a score=-1586.000000
s ce10.chrX             4108281 38 + 17718866 attcggcaagcatttttttttgaatttttgacaatcta
s cb4.chrX              9214908  8 + 21540570 ------------------------------GTACAGGG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6059836 38 + 20921866 ATTCGGACAACATATGTTCGTGATGCCTTGATAACgtt
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2381611 94 +  4147112 I
e caeJap4.Scaffold17084  365174  0 +   375229 C
e caeRem4.Crem_Contig0  1094362 63 -  4500979 I

a score=-4533.000000
s ce10.chrX             4108319 45 + 17718866 tttctgcacttgctgAAATTTT---CATACTATAAACTCAAGT-TCCAT
s cb4.chrX              9214916 49 + 21540570 GCCTTCTGTTAAAGGTTTTCCGGTACATTTTAAGAATTCAGGTagcttt
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold630  6059874 45 + 20921866 gttttctatttattgTATCTTG---CTCTCTGTGAAATTAAAT-Gcttt
i caeSp111.Scaffold630  C 0 I 12
s caeJap4.Scaffold17084  365174 27 +   375229 tttctcctccAA-------------TTTCATGTGAAC---AGT------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2381611 94 +  4147112 I
e caeRem4.Crem_Contig0  1094362 63 -  4500979 I

a score=361834.000000
s ce10.chrX             4108364 484 + 17718866  
s cb4.chrX              9214969 469 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1094425 480 -  4500979  
i caeRem4.Crem_Contig0  I 63 I 36
s caeSp111.Scaffold630  6059931 478 + 20921866  
i caeSp111.Scaffold630  I 12 C 0
s caePb3.Scfld02_0      2381705 481 +  4147112  
i caePb3.Scfld02_0      I 94 C 0
s caeJap4.Scaffold17084  365201 495 +   375229  
i caeJap4.Scaffold17084 C 0 I 1

a score=-10081.000000
s ce10.chrX             4108848 37 + 17718866 TATAGTTTCA--------ATTA----TACTGAAGTAGTTAAAGGTCAAG
s cb4.chrX              9215438 36 + 21540570 --GAGTTGTT--------GGcagtttttatca---gttttatcGTTGTA
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold630  6060409 32 + 20921866 --aaatttta--------ttta----tattaA---TTCTCAATGTTAAA
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2382186 33 +  4147112 --AAGTTTTC--------GATG---TTGTTGa---accaaaaaacttca
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  365697 40 +   375229 TCTGGTTTCACCTCTTCCATTA----CATCAT---TTTCTAATATAT--
i caeJap4.Scaffold17084 I 1 C 0
e caeRem4.Crem_Contig0  1094905 36 -  4500979 I

a score=106957.000000
s ce10.chrX             4108885 134 + 17718866 TTGCAGATATCCGCGGTTTGACAGTATGACGGAATTCATGAATGTTGCAATCATTCCAATTGTTATAGTTTCATTATCACTAATGGTATTCCTAGCGTATTGGGTTTCAACGCTGAGGT-AT---------GTGCTTCTTTTTT
s cb4.chrX              9215477 130 + 21540570 TTTTAGGTATCCTCGGTTCGACAGTATGACAGAATTTATGAATGTTGCGATTATACCAATTGTCATAGTTTCCATTCCGCTGATGGTATTCTTAGCTTATTGGGTTTCAACGTTGAGGTGAG---------GTTTTTAA-----
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1094941 134 -  4500979 ttttagaTATCCTCGTTTTGATAGTATGACAGAGTTTATGAATGTTGCAATCATCCCAATTGTTATTGTTTCACTACCTCTTATGGTTTTTCTGGCTTATTGGGTTTCAACGTTAAGGt-at---------gttttcacttttt
i caeRem4.Crem_Contig0  I 36 I 19
s caeSp111.Scaffold630  6060443 131 + 20921866 TTTCAGATATCCGCGGTTTGATAGTATGACAGAGTTTATGAATGTAGCCATCATTCCAATTGTTATTGTTTCAATACCTCTTATGGTTTTCTTAGCATACTGGGTTTCAACGTTAAGGt-tt---------gttctatttt---
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2382221 134 +  4147112 tttcagatatcccCGATTTGACAGCATGACTGAATTCATGAATGTGGCCATTATTCCAATTGTGATAGTTTCAATACCTTTGATGGTTTTCCTTGCATATTGGGTGTCAACCCTGAGGT-ATaaa------gttgtttttt---
i caePb3.Scfld02_0      I 2 I 29
s caeJap4.Scaffold17084  365737 139 +   375229 TTTCAGATATCCCCGATTTGATAGCATGACAGAGTTCATGAATATTGCCATCATTCCTATTGTGATAGTTTCATTACCTCTCATGAtttttttGGCGTATTGGGTGTCCACATTGCGGT-AATcaattttcgtctttttt----
i caeJap4.Scaffold17084 C 0 C 0

a score=546.000000
s ce10.chrX             4109019 1 + 17718866 T
s cb4.chrX              9215607 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6060574 1 + 20921866 t
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  365876 1 +   375229 t
i caeJap4.Scaffold17084 C 0 I 12
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeRem4.Crem_Contig0  1095075 19 -  4500979 I

a score=646.000000
s ce10.chrX             4109020 10 + 17718866 GGAAAACGTA
s cb4.chrX              9215608 10 + 21540570 AGATGACTTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6060575 10 + 20921866 gaaaaacata
i caeSp111.Scaffold630  C 0 I 11
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeJap4.Scaffold17084  365877 12 +   375229 I
e caeRem4.Crem_Contig0  1095075 19 -  4500979 I

a score=-2254.000000
s ce10.chrX             4109030 269 + 17718866 GAGAGCT--------------AGCCGAAAA----AGAGTTATTTTCCGATGTTTTA--------------AAATTTCAAAAGTTAGGACTTGTGTATTACAT---------GTCCTCA---------------------TTAAAAATTAAATAAAATGTTCATCCATTACTCCAGTTAATTTGAACTT-----GATGTGAATTTTTACCCATTTAGCTTATAAATGATTATTTCCTGAGCCTAAAAATTCAAAATAATGTTACACTTGAAAATTTGC--AAAATGTCGGTT--------ATTATAATCAAAACCTAATAAAT----------------------TATGGGAACATTTTTATTTGAGAA
s cb4.chrX              9215618 352 + 21540570 GAAGACCTGATACGTTTTACAAGTCGAACGCATCATAGCTTATTTCAAGTGTAATATTCTTTGTCTaactaaaattgaaattataaaactCGTTTTTGATGTCACTTTGCAGTACTCAAACAATCCTATCAAATCGATTTTagttgtcaaaaaatatattttaaaacaACGTTAGTCAAGCCTCATTTCCAAGTATGGGGACACTTTTCCATCAAAGtggaaaa--------------actcgaaaattgaaaaaaaca--atttttaagaaattgcctgaaatattaaatttctttcaattctATTTGAAACGCATCAAATATCGTGTAAAAAACGTCGGAGATATTGAGATAACCGTATTCAAAAA
i cb4.chrX              C 0 I 69
e caePb3.Scfld02_0      2382355  29 +  4147112 I
e caeJap4.Scaffold17084  365877  12 +   375229 I
e caeSp111.Scaffold630  6060585  11 + 20921866 I
e caeRem4.Crem_Contig0  1095075  19 -  4500979 I

a score=0.000000
s ce10.chrX             4109299 68 + 17718866 GTCATTTTTTTTGTCAATTTATTAATCCTGTACTTGTTGAATTTCCGCATTTTTTTCCTATATTAGTA
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeJap4.Scaffold17084  365877 12 +   375229 I
e cb4.chrX              9215970 69 + 21540570 I
e caeSp111.Scaffold630  6060585 11 + 20921866 I
e caeRem4.Crem_Contig0  1095075 19 -  4500979 I

a score=276.000000
s ce10.chrX             4109367 133 + 17718866 TTGCGTGTAAGTTTATTA-------TTTAATGTGCGAGTTT-----------GAAAATG------AAAACGCGGTAATTATAACAAATTTTCTGAAAATTTTACATATGATATTGAAATAATATATCATATTTTCATTGACCAT---AAACTGATTAGCG
s cb4.chrX              9216039 141 + 21540570 TGGGatgtaaaatttttagaaatgtttGAATATGCTACTTTCAATTTATCCTGAAATTGTAATCTAAATCTCGG--GTTACAAGatgggttttgaaaattt-------------gaaagatta----aTTTTCTGATTCACTTTCCAAAATTGAGTCTCG
i cb4.chrX              I 69 I 25
e caePb3.Scfld02_0      2382355  29 +  4147112 I
e caeJap4.Scaffold17084  365877  12 +   375229 I
e caeSp111.Scaffold630  6060585  11 + 20921866 I
e caeRem4.Crem_Contig0  1095075  19 -  4500979 I

a score=0.000000
s ce10.chrX             4109500 28 + 17718866 CTATTAAAAACCCCGACAATAAATTCAG
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeJap4.Scaffold17084  365877 12 +   375229 I
e cb4.chrX              9216180 25 + 21540570 I
e caeSp111.Scaffold630  6060585 11 + 20921866 I
e caeRem4.Crem_Contig0  1095075 19 -  4500979 I

a score=402.000000
s ce10.chrX             4109528 25 + 17718866 TACTATTTGTAGTTTACGGTAACAT
s cb4.chrX              9216205 17 + 21540570 CACTATTTTt--------gtcacat
i cb4.chrX              I 25 C 0
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeJap4.Scaffold17084  365877 12 +   375229 I
e caeSp111.Scaffold630  6060585 11 + 20921866 I
e caeRem4.Crem_Contig0  1095075 19 -  4500979 I

a score=311.000000
s ce10.chrX             4109553 2 + 17718866 GA
s cb4.chrX              9216222 2 + 21540570 aa
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0  1095094 2 -  4500979 GA
i caeRem4.Crem_Contig0  I 19 I 3
e caePb3.Scfld02_0      2382355 29 +  4147112 I
e caeJap4.Scaffold17084  365877 12 +   375229 I
e caeSp111.Scaffold630  6060585 11 + 20921866 I

a score=316985.000000
s ce10.chrX             4109555 407 + 17718866 TTTTAGGCCAAATTCCGGATCCGATACTTGGATGGTAACTGGATCAGCAGGTGGTAAAAACGCCGCTCTCCGAAGAACAATGGAGATTATAGCGGAACAAAATGAGGAGTATGAACGTCAGGAAAGATACGCCCTGACAAAACATGTTGTTGCAACTTCTGGTCATGAAGGTATCACTACAACAGGAGAGTTATTATTAAATGTGGCGAGGTT---TGA---ACATT---------------TTCAAGATCACTGAA---AAAATACTCTAAAAGTTT--GAGGTTATCAATGGCATCTTCACAAGCCCCA---------TCATCTGCTCAATCACCTCAAATATTTATTCAACCTGGAAGTTCG---AGCTCCTCATCTGTCCCGCGAACCTCTATAGTGTCGTTACACGGCGGCAAAGAGCTGCTTCACGTAAAACCTAGGTA
s cb4.chrX              9216232 405 + 21540570 ttccaggccaAACTCCGGATCAGATACTTGGATGGTAACCGGATCAGCGGGTGGTAAGAACGCCGCTCTACGAAGAACAATGGAGATTATAGCGGAACAGAATGAAGAATACGAACGCCAACAGAGATATGCAATGAGTAAGCATGTCGTGGCAACCGGTGGTCACGAAGGTATAACCACAACCGGAGAATTGTTGTTAAATGTGGCGAGGTC---TGG---AAAAGAG-------------TTTGGAAACTCATGAATTCTGAATCTTC----CTTT--TAGGTTATCCATGGCCTCATCACAAGCTCCA---------TCATCTGCCCAGTCTCCTCAAATTTTCATCCAACCTGGAAGTTCC---AGTTCATCATCAGCACCTCGCACTTCTATAGTATCTCTTCA---CGGAAAAGAGCTACTGCACGTAAAACCCAGGTA
i cb4.chrX              I 8 I 22
s caeRem4.Crem_Contig0  1095099 402 -  4500979 ---CAGGCCTAATTCCGGATCTGACACATGGATGGTAACCGGATCAGCAGGGGGAAAGAATGCCGCTCTTCGAAGAACAATGGAGATCATAGcagaacaaaatgaagaatacGAACGCCAAGAAAGATATGCATTGACAAAACATGTTGTGGCAACCACTGGTCACGAAGGTATAACAACTACCGGAGAGTTGTTATTGAACGTGGCAAGGTA---TCG---AAACTAGCAGAACGCCGATTTCCAGTAACTTATGA-----------------TGTT--CAGGTTATCAATGGCCTCATCACAGGCCCCA---------TCGTCCGCTCAATCTcctcaaatttttattcaaccTGGAAGTTCC---AGTTCGTCATCGGCGCCTCGTACCTCAATAGTATCATTACA---CGGGAAAGAATTGCTGCACGTAAAGCCCAGgta
i caeRem4.Crem_Contig0  I 3 I 4
s caeSp111.Scaffold630  6060596 401 + 20921866 TTCTAGGCCGAATTCCGGATCTGACACATGGATGGTAACAGGATCAGCCGGTGGAAAGAATGCCGCTCTTAGAAGAACAATGGAGATTATAGCGGAACAGAATGAAGAATACGAACGTCAGCAACGGTATGCCATGTCGAAACACGTTGTGGCCACTGGAGGTCACGAAGGTATTACAACAACTGGAGAATTACTATTAAATGTGGCCAGGTT---TGG---AAATCCT-------------GTGAAGATTTCA------AACATTCTTC----TCTTGATAGGTTATCAATGGCATCATCACAAGCCCCA---------TCATCAGCCCAGTCTCCACAGATATTCATTCAACCGGGAAGTTCA---AGTTCATCATCAGTGCCTCGAACTTCGATAGTGTCGTTACA---CGGAAAAGAATTACTACACGTAAAGCCTCGgtg
i caeSp111.Scaffold630  I 11 I 4
s caePb3.Scfld02_0      2382384 404 +  4147112 TTCCAGGCCGAATTCCGGATCTGACACCTGGATGGTCACCGGATCAGCCGGCGGAAAGAATGCCGCCCTTCGAAGAACAATGGAGATCATAGCGGAACAAAATGAGGAATACGAACGCCAGCAACGATATGCGATGTCAAAGCATGTGGTGGCTACAGGAGGTCATGAGGGTATTACCACAACGGGAGAACTGTTACTAAATGTTGCAAGGTTAGAggg---aaatc---------------aaaataatttcataG--TGACAGATTCC----ATTT--CAGGTTGTCAATGGCATCATCACAAGCGCCT---------TCTTCAGCACAATctcctcaaattttcattcaacctGGAAGTTCA---AGTTCATCATCCGCACCTCGTACTTCAATAGCGTCATTACA---CGGGAGAGAGCTTCTGCACGTAAAACCCAGGTA
i caePb3.Scfld02_0      I 29 I 12
s caeJap4.Scaffold17084  365889 424 +   375229 ttgtagtCCAAATTCCGGGTCGGACACCTGGATGGTAACCGGTTCAGCTGGTGGGAAAAATGCCGCTCTTCGCAGAACAATGGAGATCATAGCGGAACAAAACGAAGAATACGAACGTCAGCAGAGATATGCATTGACCAAGGATGTGATGCCCACTGGAGGGCATGAGGGTATTACGACGACTGGGGAATTACTTTTAAATGTTGCTAGGTT---TGatataaattca-------------aaaaaaatatattga---ttGGAATTTAAGTAATTT--GAGGTTATCTATGGCTTCTTCTCAACAACCGGTATCAAGTTCATCAGCTCAATCTCCACAAATTTTCATTCAGCCGGGAAGTTCGAGTAGTTCATCTTCAGTGCCTCGAGCATCCATAGTTTCACTGCACGGAGGAAGAGAGCTTCTTCATGTGAAACCTAGGTA
i caeJap4.Scaffold17084 I 12 I 78

a score=-13272.000000
s ce10.chrX             4109962  19 + 17718866 TTT-------------------------ATTCTTTGCACTGGTC--------------------------------------------------------------------------------------------------
s caeRem4.Crem_Contig0  1095505  19 -  4500979 ttt-------------------------tctcattgtCCAGTTC--------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  I 4 I 1
s caeSp111.Scaffold630  6061001  19 + 20921866 ttt-------------------------catcttctcttaGTTT--------------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2382800  19 +  4147112 CTT-------------------------CACCTTCGTCCAGTTC--------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17084  366391 142 +   375229 tttaaaGAAATCAgtgcaaaacatcggccacggtctctcagttttctgcactctttcgtcgccaacgtggccgcgtcctccattgtgcgaaaggagcgagtttgcagcactccgtactgagaatagaacGATCAAATCATTC
i caeJap4.Scaffold17084 I 78 C 0
e cb4.chrX              9216637  22 + 21540570 I

a score=77896.000000
s ce10.chrX             4109981 113 + 17718866 ATTTCTAAATCTAATACATCATT-TCTGACAACGCA-TTTGTTTTATGAACACCCACCCGT-----AGTGACG--GA-----AGATTTTTACACTTTCCATCACTTTTTTGCGCTAAA--GAATGAA--------GG
s cb4.chrX              9216659 123 + 21540570 -aattctcaactAATACATCATCTTCTGACAACGCATTTTGTTTTATGAACACCCACCCGT-----AGTAGTGACGG-----GAGAGATTACACTTCC-ATCAC-TTTTTGCgcttagaaaaatgaaaaactgc-GG
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0  1095525 117 -  4500979 -TATTCTCAACTAATACATCATC-TCTGACAACGCA-TTTGTTTTATGAACACCCACCCGT-----AGTGACG--GA-----GAATTTTTACACTTTCAATCAC-TTTTTGCGccaag--aaatgaaaaacgg--gG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6061020 121 + 20921866 ATATTCACTAccaattcatcatt-tctgaCAAAGCA-TTTGTTTTATGAACACCCGCCGGT-----GGAGACA--GA-----AAATTCTTACActtttcatcactttttttctctgag--aaatgaaaatcggAGGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2382819 120 +  4147112 ATATTTAATACTAATTCATCATT-TCTGACAACGCA-TTTGTTTTATGAACACCCACCCGT-----GGAGACA--GA-----AAATTCTTACactttcaatcac-tttttgcgctgag--aaatgaaaaacgacgAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  366533 122 +   375229 AATTTCAACGTTAATATGTCATT-TCTGACAACGCA-TTTGTTTTATGAACACCTCTGCATTTTTCAATGACT--GAGGCATAGATTTTTACACATAAAATAAC-TTTTTGCGctgag--aaatgaaaa--------
i caeJap4.Scaffold17084 C 0 I 164

a score=44761.000000
s ce10.chrX             4110094 135 + 17718866 ATCCC-GGTGATGTAGTGATACGTCCGGGAAAATGATGA-----CAGAGA--------------GAAAGTGCAAGTGTC-AAGACAATTGCTAGACGGAAACTTGATATGTCATAGCTAGCT-----TTGTTATGCTT-------GATTTTACAA---ATAATTCAGGTCA
s cb4.chrX              9216782 165 + 21540570 ATCTCGGGTGATGAAGTGATACGTCCGAAGAAATGATGATGGAGGAGAGACAGCCAGGAGAG--AAAAGTGCAAGTTTCAAAGACATTAGTCAGTCTGACACTTTATCT----TTTCTCgtcgtcatttttttgtctcgGCATAGGATTCCATGATTGATAGTTCAGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1095642 143 -  4500979 ATCTC-AGTGATGGAATGATACGTCTGAAGAAAAGATGA-----GAGTGA----------AG--GAAAGTGCAAGTGTC-AAGTCATTTGCTTGTCTGACACTTGATATCCTATATCTTGTTGCgcttatttcttctt---------ttttatgaGTGATCATCGAGGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6061141 144 + 20921866 AAAGC-GGTGATGAAGTGATACGtcgaaagaaatgatgatgat-gacagC----------AGGAAAAAGTGCATGTGTC-AAGACATTAGTTAGTATGACACTTGATATGCTATATCCTgac-----ttctttctctt---------ttttacgTCTGATCATTCAGGTCA
i caeSp111.Scaffold630  C 0 I 27885
s caePb3.Scfld02_0      2382939 141 +  4147112 ATCTC-AGTGATGAAGTGATACGtctgagaaaatgatgatgac-agaaaa----------ag--aaaagtgcaaGTGTC-AAGTGATTTGTTATCCTGACACTTGATATGTTTTATCCAgga------tcattttctt---------ttttatgacTGATCATTCAGGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  366655 164 +   375229 I

a score=-37.000000
s ce10.chrX             4110229 17 + 17718866 ----GATA-----------GATCATGCGA------ACA--------
s cb4.chrX              9216947 39 + 21540570 A--AGGTTACCAGTTGGGAGATAATTCGA-----TTCATCGTATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1095785 44 -  4500979 AATAGGTAACCAGTTGG--GATAATGCGATCACTTTCATTCGATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2383080 30 +  4147112 GATAGGTAACCAGTTGA--GATAATGCGA------TCA--------
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17084  366655 164 +   375229 I
e caeSp111.Scaffold630  6061285 27885 + 20921866 I

a score=1000.000000
s ce10.chrX              4110246 2 + 17718866 TT
s cb4.chrX               9216986 2 + 21540570 GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1095829 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14855138 2 - 20921866 TT
i caeSp111.Scaffold630  n 27885 C 0
s caePb3.Scfld02_0       2383123 2 +  4147112 TT
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17084   366655 164 +   375229 I

a score=366367.000000
s ce10.chrX              4110248 447 + 17718866 AATCTAC-TTACAGACATTCGCGTCGGCCATCTTCAGTGGAGGAAATTAAAAAAG-CGAGACGCATGCGCGGTCATCGAAAGTCGGAATCAAAACAGTGGAAATCGGGAAGTCTGATGTTAGCTGGATTTCGAAGGACATAAATCACCACATAC--ACATCAAATAATGATT--------TCAATTTCATCCATTTTATTATTCA-----ATTGC----ACAAATTGTTCATGATTTTAC--GTGTCAGATCGTCAAATAGAGTTT-AATACAATTATTAGTTGTGAT---TGATTAT-----CTTCAC----TTATTAATAATACTGGTTTAGCTTCTGTTCTTGTAGCAAGAGGCCACCAAAATGTTAATCTCCTCACAAGTTGCTCCTGGAAGGTACATTTTGGCAAATGCACAGTTGCTCGCTACCCAGGCAGGAACATCCTTTACACCGTAAGTCTTGGAGTAGTGTTCAACCTAAAA
s cb4.chrX               9216988 431 + 21540570 AATCTAC-TTACAGACATTCGCGACGACCATCGTCAGTggaggaaatcaaaaaag-caaGACGCATGCGCGGTCATCGAAAATCGGAATCGAAACAATGGAAATCGGGCAGTCTGATGCTAGCTGGCTTTCGAAGgacata---------------aaaaaagaaaatatat---------tcATTAAATGTGTTT--TTATC-------ATTGCACATACATATTGTTCATGATTTCACAAGTTTAAGATCTTCAATTAGAGTTT-AATACAATTATTAGTTGTGACACTTGGTTTT--TCGTCTCAATTTCTTATTAAT--------------TTCTCTTCTTGTAGCAAGAGGCAACAAGAATGTTGATCTCCTCACAAGTAGCTCCTGGAACGTACATCTTGGCAAATGAGCAGTTGTTTTGTACCCATCCCAAAACATCCTTCACTCCGTACATCTTGGAATAGTGTTCAACCTGTAA
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   1095831 417 -  4500979 AATCTTC-TTACAGACATTCGCGTCGTCCGTCTTCAGTGgaggaaatcaaaaaag-caaGACGCATGCGCGGTCATCGAAAGTCGGAATCGAAACAATGGAAGTCGGGCAGTTTGATGTTAGCTGGATTCCGAAGGAcataac-------------acaaaaaaaaacaaat---------tgatttCATTCTTTC-ATTATC-------ATTGC----ACATATTGTTCATGATTTCTC--GCATAAGATCTTCAAATAGAGTTT-AATAC-ATTATTAGTTGTGAC---TGATTGT-----CTTCAA----TTATTAAC--------------TTCTCTTCTTGTAACAGGACGCAACAAGAATATTAATCTCATCGCAAGTAGCTCCGGGAACATACATCTTGGCGAAAGAGCAGTTGCTTTGAACCCATCCGAGAACATCCTTGACTCCGTACATCTTGGAGTAGTGCTCAACCTGTAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  14855140 431 - 20921866 AATCTAC-TTACAGACATTCGCGTCGTCCTTCGTCTGTGgaggaaattaaaaaagacaaGACGCATGCGCGGTCATCGAAAGTCGGAATCGAAACAATGGAAGTCGGGCAGTTTGATGTTAGCTGGATTCCGAAGGACATAATT------GTAC--AAAACAACCTGCCaaa------atctgatttcattcattt-attaTC-------ATTGC----ACAAATTGTTCATGATTTCAC--GTGTAAGATCGTCAATTAGAGTTTAAATAC-ATTATTAGCTGTGAC---TTATCATAGTC-TTCCAA----TTATTAGT--------------TTCTGTTCTTGTAGCAAGAAGCAACAAGAATGTTGATCTCCTCACAAGTAGCTCCTGGAACGTACATCTTGGCGAAAGAGCAGTTGTTTTGTACCCATCCAAGCACATCCTTCACTCCGTACATTTTCGAGTAATGCTCAACCTGAAA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0       2383125 435 +  4147112 AATCTAC-TTACAGACATTCGCGTCGGCCGTCTTCTGTGGAGGAAATTAAAAAAG-CAAGACGCATGCGCGGTCATCGAAAGTCGGAATCGAAACAATGGAAATCGGGCAGTCTAATGTTAGCTGGATTCCGAAGGACATAATt----aagtattaaaaaaaaacaatcaaatctcatttctgatttcattcattt-attatc-------ATTGC----ACAAATTGTTCATGATTTCAC--GTGTAAGATCGTCAATTAGAGTTT-AATAC-ATTATTAGTTGTGAC---TTATTGT-----TCTCAA----TTATTAGT--------------TTCTATTCTTGTAGCAGGAGGCAACAAGAATGTTAATCTCCTCACAAGTAGCTCCTGGAACGTACATCTTAGCGAAAGAGCAGTTGTTTTGCACCCATCCGAGCACATCCTTCACTCCATACATTTTGGAGTAATGCTCAACCTATAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084   366819 424 +   375229 aatctgctTTACAGACATTCTCGTCGACCTTCTTCCGTAGAGGAAATTAAGAAAG-CGAGACGAACGCGTGGTCATCGAAAGTCGGAATCAAAACAGTGGAAATCGGGCAGTTTGATGTTAGCAGGGTTCCGAAGGACGTA---------------AAACAACTTCACAAAA---TATTTCATATTGTATACATTA-TTTATGAATGCTGATTGC----ACAACTTGCTCATGATTTCAT--GTGTCAGATCGTCAAATTATTTAA-CATAC-ATTATTAGT---------TTCTTCT-----TTCCGCGATATTATTAGT-----------------TCTTCTTGTAGCACGAGGCCACGAGAACGTTGATCTCCTCGCACGTTGCTCCTGGGACGTACATTTTGGCAAAAGAACAGTTGCTTTGAACCCATCCGAGAACATCCTTCACTCCATACATCTTGGAATAGTGCTCTACCTGAGA
i caeJap4.Scaffold17084 I 164 C 0

a score=-11603.000000
s ce10.chrX              4110695 36 + 17718866 ---TTATTCTCATATGATCATATGAACAAATGAA---CAAA------A
s caeRem4.Crem_Contig0   1096253 31 -  4500979 ---CAAATAAGAAACGGCT--------AGGttagatttgaa------a
i caeRem4.Crem_Contig0  I 5 I 10
s caeSp111.Scaffold630  14855574 38 - 20921866 ---TAAATATGTCAAGGATATCCGGA-AGGccattctcaaa------a
i caeSp111.Scaffold630  I 3 I 5
s caePb3.Scfld02_0       2383563 45 +  4147112 ---TTATGAGTTGATGGTTAAAATGATGGGGGACCCTCAAATTAATTA
i caePb3.Scfld02_0      I 3 I 5
s caeJap4.Scaffold17084   367243 29 +   375229 ctcataaaatttgaaaaatatg-----agatTAA--------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9217419 53 + 21540570 I

a score=156817.000000
s ce10.chrX              4110731 305 + 17718866 AAACGGTTGCAGAAATTTTACCTGTTTGCAGTGTTTTGGATCAAGAATCAATGGGCGTCCTTTGGAGTCGCGTTGGACATCGGAAACAGTTGGTGGAGTGGTAGTGCTGATTTTTTGGGTTTTCACCTTAAAGATTCAATATTATCTAGATTAG------------------------------------------------------------------------------GCTAATATTATGCG-------CCTACTTTTTTAGCCATGGGCATCTCGATGCTTTCAGTGGATCGGAAATCCTCATTTTTGCGGTTGATTTTCTCCTCCTCTGTCTTCCACGGGTACTTGGAAGTTACTGGCTTC-TGCAAAAGTTTATATGAGTTTTT
s cb4.chrX               9217472 290 + 21540570 aatgtttgaaaaaatgtttacctGTTTGCAGTGCTCTGGAGAGAGGATCAGTGGTCTTCCTTTGGCATCTCTTTGCACATCAGAGATAGTTGGTGGGGTGGTGGAGATAATTTTCTTGGTCAATacctagagaaaaaaa----aattttgaaag------------------------------------------------------------------------------gcgaagtcaagaaaaaaagagctcaCTTTTCTAGCCATTGGCATTTCGATGCTCTCTGTGGATCGGGAATTTTCATTTCTACGGTTCACCTTCTCCTCCTCGGCCTTCCATGGGTATTTGGAAGAGGCAGACTTCTTGAA-------------------
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   1096294 285 -  4500979 atgATCTATGATAGCACTTACCTGTTTGCAGTGCTCTGGGGAGAGAATCAGTGGTCTTCCCTTGGCATCTCTTTGAACATCAGAAATAGTTGGTGGAGTGgtggaaacaattttttgagttttaaccTAGAAATAGAGGT-TTAGCTTTGacat------------------------------------------------------------------------------tatattttcaaaca-------ctCACTTTTCTAGCGATTGGCATTTCAATGCTCTCTGTTGAGCgagaattttcatttctacGGTTTACTTTCTCTTCCTCAGCCTTCCATGGGTATTTGGAGGTGGCACTCTTC-TGAA-------------------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  14855617 311 - 20921866 aaaattgagaagaaatagtACCTGCTTGCAGTGTTCTGGAGAGAGGATCAGTGGTCTTCCCTTTGCATCTCTTTGGACGTCAGAGACAGTTGGTGGGGTTGTggcaacaattttttgagttttcaccTTCAAAAGATCGTcttggtttttaaaa------------------------------------------------------------------actggtTGGCGTTTTGATT-----AacgaaaaactcacttttcttgCCATTGGCATTTCGATGCTTTCAGTAGAACGGTTGTTCTCATTCTTACGGTTgactttctcttcttcggcCTTCCATGGGTATTTGGAGGTAGCTGCCTTC-TGAACAATC--------AGTTTT
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0       2383613 369 +  4147112 AAAAGTTTAAAGAA--AATACCTGCTTGCAGTGTTCTGGAGAGAGGATCAGTGGTCTTCCCTTGGCATCTCTTTGAACGTCAGAGACAGTTGGTGGGGTGGTGGCAacgattttttgggttttcaccttaaaaa-------ttgattttaaaaatttgcaTGAGAAAATAAGACAGTTAGGTTTACAGAAGTTCAAGTTTCCCTCCCTTTTTGAAGCTCCACAGGCtagttttgtgattttttgaactattaACTCACTTTTCTGGCGATTGGCATTTCAATGCTTTCTGTCGATCTGGAGTTTTCATTTCGGCggttcactttttcctcttcagcCTTCCATGGGTATTTAGAAGTGGCAGCCTTC-TGAA-ACTC-----------TTT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084   367272 223 +   375229 -----------GATTGATTACCTGCTTGCAGTGCTCTGGAGAAAGAATGAGTGGTCTACCCTTTGAGTCTCTTTGGACGTCAGACACAGTTGGTGGAGTTGTagcaacaattttttgagtt------------------------------------------------------------------------------------------------------------------------------------ttcacCTTTCTAGCAAGTGGCATCTCGATGCTCTCAGTAGATCTGACGTTCTCATTTCTTCTGTTTACCTTCTCTTCCTCTGCCTTCCATGGGTACTTGGACGATGGATTCTT-------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-16717.000000
s ce10.chrX              4111036 115 + 17718866 AAATTTCTTTTAA--AAAGCACGGTGCGGTATTCACCACGAGGCCCAGAAAACCCCAGAACTCGACCAACCATTTATTTTCTATCTTTCTGGGGAGACAATTTTCAAACTGCTGATC
s cb4.chrX               9217762  16 + 21540570 ---------ACAA--AAA-------------------------CTCGAAGAA-----------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1096579  14 -  4500979 ---------TCAA--AAG---------------------------AGAAATA-----------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14855928  24 - 20921866 CTATAGTCTCCAATCTCA-------------------------CTCAGA--------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2383982  25 +  4147112 TCACTCTTaccaa--aca-------------------------ttcaaaaaa-----------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   367495   0 +   375229 C

a score=354487.000000
s ce10.chrX              4111151 625 + 17718866  
s cb4.chrX               9217778 561 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1096593 567 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14855952 546 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2384007 523 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   367495 586 +   375229  
i caeJap4.Scaffold17084 C 0 I 3243

a score=6151.000000
s ce10.chrX              4111776 24 + 17718866 CCTGGAGAGAAACATTGCAATATT
s cb4.chrX               9218339 24 + 21540570 GCTAAAGGAAGACGTCGTAATGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1097160 21 -  4500979 CCT---GAGAAACGTCGTAACATT
i caeRem4.Crem_Contig0  C 0 I 475
s caeSp111.Scaffold630  14856498 21 - 20921866 CCT---GGAGGACGTCGTAACATT
i caeSp111.Scaffold630  C 0 I 365
s caePb3.Scfld02_0       2384530 18 +  4147112 CCA---GGAAGACGTCGTAAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   368081 3243 +   375229 I

a score=517.000000
s ce10.chrX              4111800 14 + 17718866 ATTTCCATGAATAA--
s cb4.chrX               9218363 14 + 21540570 ATTtcaatcgagaa--
i cb4.chrX              C 0 I 1756
s caePb3.Scfld02_0       2384548 16 +  4147112 ATTTTAATAAACACGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e caeSp111.Scaffold630  14856519 365 - 20921866 I
e caeRem4.Crem_Contig0   1097181 475 -  4500979 I

a score=-3998.000000
s ce10.chrX              4111814 933 + 17718866  
s caePb3.Scfld02_0       2384564 632 +  4147112  
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeSp111.Scaffold630  14856519 365 - 20921866 I
e caeRem4.Crem_Contig0   1097181 475 -  4500979 I

a score=0.000000
s ce10.chrX              4112747 47 + 17718866 TTTCAAAAGTTAGCTGATCAACATTTTAGTTGGTTTTAGAAATAAAG
e caePb3.Scfld02_0       2385196 36 +  4147112 I
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeSp111.Scaffold630  14856519 365 - 20921866 I
e caeRem4.Crem_Contig0   1097181 475 -  4500979 I

a score=-2079.000000
s ce10.chrX              4112794 377 + 17718866 TTAAGTTTGAAAAATTCGGAAAATTTTTAGAAGTTGGCAATTTTTTTGTT---AATTTTGAAATGGTCAGTTGGTCAAAAGTTGGAAAACCAGCAATTTTTCCAATAGGCATTTTTTCAATCATTAATCAGAATTATCATGATTCAAGTATACAAATCATTAAAAAACTTTTGTTTTTTGGGTTGGCTTCGGAAAAAAGAGAAAAGGTAAACACACACAAATCACTATTTTTACTGTGAATAACAATTTCAAAGATTTTTATAAACGTCGACTATCATATGTAGTCATTTTAACACCATAGAATTGGTTTCAAACAATTTTACTACCCCGGCACAAATTTGCTATTCAAAGACCAAAACTATTTTTTGCGAGACATAGGG
s caePb3.Scfld02_0       2385232 239 +  4147112 tgaaacctgaaaaac------agttCGCAGAAAAC----ACcttgttgttcaaaaaaatgaaat---------cttaCAATATGAACACTCAGGAACTCATCGAATTGGCCCTGATGCAGGCCCTGCTGCGAAACTCCACGATTCAGTGGTGAGAAGCACTCAATAGTT-----------------------------GAGAACAGGC-----------AATCTTTATTATAGCTCTGAGCATCAGATACTAGGATTCTTTTA-------------------TGgcatttta---------------tttcga---------------------aaatttg-------aagaa-----------tttgtgA---------
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeSp111.Scaffold630  14856519 365 - 20921866 I
e caeRem4.Crem_Contig0   1097181 475 -  4500979 I

a score=-40.000000
s ce10.chrX              4113171 7 + 17718866 TTCGTTG
s caeSp111.Scaffold630  14856884 7 - 20921866 TTCAGTG
i caeSp111.Scaffold630  I 365 C 0
s caePb3.Scfld02_0       2385471 2 +  4147112 -----TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeRem4.Crem_Contig0   1097181 475 -  4500979 I

a score=14697.000000
s ce10.chrX              4113178 207 + 17718866 ----AAAAAATTATCTTTCTAATTCGTATTTACTTTGTTGTACCTACTTCTACCTTCCATTTCCCATTGCTCAGTCAATATTTTTGTTTCAC-------------GGCATCATTCATA--CTAAAAGAGCAACA--------ACATTCCATCC---ACCA---CACACCAGCAACACACCTTGACAGTAATTCAAAA----AACAACAAGACCTTTC---TCGAATTTTTTATTGTCTCAGGAA--AAA
s caeRem4.Crem_Contig0   1097656 210 -  4500979 ----aaaaagtgatctCTATGAACTCTATTTGCATTG-------------------CTATACCCCA---ACATGtcaatatttttgttcctCAAATTTCCT----CACATCATAATTT--TCCTAAGAGCAACACAAAACCCAAATTTAAGTc---aatatttcaattcaataa-acactttgaaa-tatttcacaaATACCACCAGAAATTGTTTCT--CCAAAAACATTCACttgtctttcattttc
i caeRem4.Crem_Contig0  I 475 C 0
s caeSp111.Scaffold630  14856891 210 - 20921866 AACCAAAATTTGATCTCTATAAACTCTATTTGCATTG-------------CAGCTTCTATGT-------ACTTgtcaata-ttttgtttctcaaatttctattt-cacatcatattttcaaacaaacaGCCATAAAG-----AAACACGAGtcaataataatttatttcaataa-acACTTGGAAC--ATTTCAGGA----AACCGTCACTTAcctc---tgaaaaacatttacCTGTCCATCA--CCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2385473 210 +  4147112 AACCAAAAATTGGTCTCTTTAAACTCTATTTACATTG----------TTTTAGTTCCTACA----------atgcaaatatttttgttcctcaaatttctttttccacaTCATAATAT--AACAAacagcaacaaaa-----aaactcgagtc---aatatttcatttcaataa-acatttcgaga--atttcaagA----CATCATAATCTACTTCCCGCAAAAAACATTTACCTCTCATTCA--ACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   368081 3243 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I

a score=43608.000000
s ce10.chrX              4113385 367 + 17718866 GTTCAACTGATCTTTTATGAGTCATTTGTTCATTCTCCGTCACACATTTTTACCCCTTTTTACCTTCGTCCAACTTATTTTTTCA--------GGA-TTATTTGCCGACC----TCTGCAAAC--AGTTTTCCTAGA----TTTTGGCCGTTTACTGTG---CTCATCTAATGCCAAACCGTGACTCAGTGTTTTGTGCCTGTTATGTGGCTGCCGTAGTGAGCTGTGATACTATGGAACTTGAAATTTTACTT--------------TTCGGAAAACCAGAATAATAT--------------TGGGTTA-ATGCA---ATCAAATTTTTTTTTTCATCAAATATTGGT-----T----TAATCTTCAT-----------------------TTTTTTC-----------------------AGGGCTCTAATCTTTTTATT------------CTCAATTCTAACAGCTCAAAAAAAAATAATTTCA-------
s caeRem4.Crem_Contig0   1097866 315 -  4500979 ttttacCTGATCTTTTGTGA--------CTCATTCAACGTCACA--------------TTTTCTTCCGTCCAAC-CATTTTTTCA--------GAG-CTATTTGCTAACCAACAACAGCAAAC--AGTTTCCCTCAA-CTTTTTTGGCCACGGACTGTG---CTCATC--------AACTGTGACTCAGT--------CGTGTTTTGTGGCAGCCGTAGTGAA--TTGATAGTATTGAAC--------TTAATTAAAAGtggaaaacgtcaaaaaatccGGTCTCCTAT--------------TTAAATA-----------CAAACTTTG-------------GTATGT-----TGGTTTTATCTCCttg----------------------ctttttt----------------------atttattctcatCGCCCAGTTTGATCAGCtgctttaaaat----------------------tttta-------
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold630  14857101 325 - 20921866 TTTTACCTGGTCTTTTGTGA--------CTCATTCACCGTCACA--------------TTTCCTTCCGtccaac-tatttttttttccagaaagaa-CTATTTGCCAACG----ACAGCAAAC--AgtttctctaaattttttttggtcaCGGACTGTGCTCCTCATC--------AAGCGTGACTCAGT--------CGTGCTTTGTGGCTGCCGTAGTgaa--atgatagtttttgaa--------ttacgT----------------CAAAAATCTagatcatttt--------------tgaaaga-----------taaaCTTCAT---------AGTATTGGT-----T----TTATCTccttga------------------tttctttttttatttgattctcacattgtttgatcagctgcttcagtttcttt------------ctgattt------------------ttattttca-------
i caeSp111.Scaffold630  C 0 I 10
s caePb3.Scfld02_0       2385683 307 +  4147112 TTTTACCTGATCTTTTGTGA--------CTCATTCATCGTCACA--------------TTTCCTGCCGTCCAAC-TATTTTTCCTC-------GAA-ATATTTGCTAACC----ATAGCAAAC--agtttctctaaa--ttttttggcCACGGACTGTG---CTCATC--------AACCGTGACTCAGA--------CGTGTTTTGTGGCTGCCGTAGTGAA--ATGATAGTATTGAAC--------TTGCGT-------------GTCAAAAAATCcggctcatttt--------------tgaaaga-----------taaacTTTGC---------TATGTTGGT-----T----TTATCtccttga------------------tttctttttt-----------------------atagtTATTCTCGCATCGTTTGATCAGCTGCATTGatttcc----------------ccgtttttt-------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17084   371324 359 +   375229 GTCTACCTGGTATTCTGTGA--------CTCACCCACCACCGCAA-------------ACTTTTGCCGTCCGAg-tattttttta--------gaatttgttTGCCACCC----TCTGCAAACataaattccgaaaa----ttttg-------acagCG---CTCATC--------ACACGTGACTCAGT--------CGTGCTCTGTGGCTGCCGTAATGTG--CTAAACCACTGCCAA--------CTAGGT------------CATGCGAAACATCGGCGCCATTTTCTTTCATTTGGAATGGAATAAATGCAGCCGTTGAACGTTCTTTTTTATCCACTATTGCTATTTGT----TTATGTTTATAGAGATAGATAGccagaaacatgttttttt-----------------------ttcattcccaTGACCATGTT-------CCTTTTTCATTTCA----------------TAAATTTTGAGTCCTA
i caeJap4.Scaffold17084 I 3243 C 0
e cb4.chrX               9218377 1756 + 21540570 I

a score=-1153.000000
s ce10.chrX              4113752 14 + 17718866 ACATTAAAAAAACC
s caeSp111.Scaffold630  14857436 14 - 20921866 ATGcaccaaaagtt
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0       2386000 14 +  4147112 aacCACCATAAACC
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17084   371683 11 +   375229 --TCAGTAAGAAT-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9218377 1756 + 21540570 I
e caeRem4.Crem_Contig0   1098181 28 -  4500979 I

a score=18641.000000
s ce10.chrX              4113766 62 + 17718866 CATATCA------AGTACCTGTAACTCATG-ACCACTTATTGATATT-TTGAACGGT------GCTTGT---TGTTTAC
s caeRem4.Crem_Contig0   1098209 61 -  4500979 cactttg------aatACCTGTAACTCGTG-CCAAATTATCAATGTT-TTGAATGCT-------TTCGT---TGTttac
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold630  14857450 57 - 20921866 ----ttg------aatacCTGTAACTCGTG-CCAATTTATCAATGTT-TTGAATGTC-------CCTGT---TGTTtgc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386014 63 +  4147112 ----TTGAATAGCAATACCTGTAACTCGTGTCCAATTTATCAATGTT-TTGAGCGT--------CTTGT---TGTTtac
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   371694 71 +   375229 -------CAAATCAAACCGTGTAACTCATG-ATCATTTATTAATACTGTTGGTTGTTATTGGTGCCTGTCCGTGTTTAC
i caeJap4.Scaffold17084 C 0 I 470
e cb4.chrX               9218377 1756 + 21540570 I

a score=38092.000000
s ce10.chrX              4113828 246 + 17718866 --------AAAAGGTGCACCAT--------GGGAACGTCATTCTTCCTT---TTCAACCCAA------CAAAAAAGTTGTGTTTGATTTCCTAACGTCATGAGAAACTG---------------------------------TCAACCTGGATATTTTTGTTTGATTTTTTATCCAACTATTTTTGAAAGTCACATGAAAGAAGTGCTGCTCTTATTTTCTTCATTATATTTCTCTCGTATTTGTTTTAGTTACCGCGGTTTTCATTTT---TTTTGTTTGTTCTATCCAAATGCCACCAGCATTTT-
s caeRem4.Crem_Contig0   1098270 256 -  4500979 atttcgaaaaaa---gtattATATTTTGTCAAGAACGTCATTCTTCCTTTTATTCCGTTCCATTCGATCAAGACAGCTTTCAAttcgttttcaattctttaggtaacag----------------tttttgaaagaacatAGAAAACCtggatgtt-----ttcagtttttg-----------ttgaaagtcacatga-------------tttgtttccatcttca---tccctttttgtttgttttactTACctcctttctcattttcgtTTCTGTTTGCATTATCTAGATGCCATCAGCAGTTT-
i caeRem4.Crem_Contig0  C 0 I 215
s caeSp111.Scaffold630  14857507 254 - 20921866 -ttttgaagaaaattgtaTTATATTCTATTCGGAACGTCATTCTTCCTTTCATTCCATCTGA------CAAAACAGTT-TGCTTTCCTTTACA------tgggaaactga--------aattaaattttcgaa---------aaaaagtggatattt---attgaaattcgaaaggA----TACTGAAAGTCACATGg-------------tttgtttctatcttca---tcccattttgtttgttttacttacctcttttctcattttcttttttgtttgcatTATCTAGATGCCATCAGCAGTTCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386077 253 +  4147112 tttttgacaaaaaatgtattgtaTTATACTGGGAACGTCATTCTTCCTTTCATTCCACCTAA------CACAACAGTTCTGGGTCGCTTTTCA------TGAGAAACTGAcaacttttactttttttttcg-----------aaaaggtagatatt-----ttcatatttttctgg-------tTGAAAGTCACATGG-------------TTCGTTTCCATCTTCA---TCCCATAATGTTTGTTCTACTTacc---ttcttcatttt-gtctTTGTTTGCATTATCCAAATGCCATCAGCAGGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I

a score=267.000000
s ce10.chrX              4114074 78 + 17718866 AAATCGAGTGGCCGATTTCCCTATTCCAAG-----TGAATTT---TCACTAGTTTCGCTATCTAAGTATGGCAAAGTCTATTAAAT
s caeSp111.Scaffold630  14857761 73 - 20921866 CAATTGAGTG-------CCCCCATTTCAA------CGAGTTTTACGCACTCATTTTGCATAACCTAAATGTCAGTGGTCATCAAAT
i caeSp111.Scaffold630  C 0 I 21
s caePb3.Scfld02_0       2386330 61 +  4147112 CAATTGAGTG-------CCCCcaattcaaattcattgaatttacCTTCCTCAccttccaaattttgca------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=1045.000000
s ce10.chrX              4114152 46 + 17718866 GTCAAATACTAAGGTACACATCTTATCAGTTTGT-GTTTTTCCTCAA
s caePb3.Scfld02_0       2386391 45 +  4147112 --tAAATACAAATGTCAATGAGTCGGCAATTTATGGTTTTTACTCAA
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeSp111.Scaffold630  14857834 21 - 20921866 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=0.000000
s ce10.chrX              4114198 534 + 17718866  
e caePb3.Scfld02_0       2386436 100 +  4147112 I
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeSp111.Scaffold630  14857834  21 - 20921866 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=446.000000
s ce10.chrX              4114732 83 + 17718866 TTAACAATTTTTTTCAGTAATTAAAAATTGATCGGAAAT---TGGAGTTGCAATCACTATTAGATTCAATACTAATAGGGAAACGA-
s caeSp111.Scaffold630  14857855 86 - 20921866 TTATCAGTTTGTGTttatgatttcagaataattatAAATAAGCGAAACCCCAATGACT-TGAACTTCTGTTTTCATACGGATTCGAT
i caeSp111.Scaffold630  I 21 C 0
e caePb3.Scfld02_0       2386436 100 +  4147112 I
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=-42.000000
s ce10.chrX              4114815 6 + 17718866 CTTGTT
s caeSp111.Scaffold630  14857941 1 - 20921866 -----C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386536 6 +  4147112 CTCATC
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold17084   371765 470 +   375229 I
e cb4.chrX               9218377 1756 + 21540570 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=2879.000000
s ce10.chrX              4114821 17 + 17718866 -----TC--AGTTCAAATTAAAAT
s cb4.chrX               9220133 14 + 21540570 -----TC--AGTTCA---TAAAGT
i cb4.chrX              I 1756 C 0
s caeSp111.Scaffold630  14857942 21 - 20921866 CTAATTCTGAGTTCA---TAAAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386542 19 +  4147112 TAAATTC--AGTTCA---TCATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   371765 470 +   375229 I
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=-5856.000000
s ce10.chrX              4114838 8 + 17718866 ----TGCAT-TTT
s cb4.chrX               9220147 6 + 21540570 ----TTCGTT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14857963 5 - 20921866 ----CTCCG----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386561 5 +  4147112 ----CTCTA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   372235 8 +   375229 TGTATTTA-----
i caeJap4.Scaffold17084 I 470 C 0
e caeRem4.Crem_Contig0   1098526 215 -  4500979 I

a score=84714.000000
s ce10.chrX              4114846 141 + 17718866 TGTGTGC-AAAACTTTACGTTTGC-TGGACATTCAC---CGACTCCAATGATCTGTTTCGTCATGCGTGTCAAT-AAA----ACGCGTTATCAGTACTCAAAAATAAGTACTCCC----------AGAAT----CGAA-AACCTATGCAGAA---ACGTATTAGCAATT
s cb4.chrX               9220153 144 + 21540570 -GTGCACTACAACTTTACGGTT-C-------TCCTT---GGGCTCCAACAATCTATTTCGTCATGCGTGTCAAT-AAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCT----------AGAATTTTCC-CA-AACCTATGCAGAAAATATGTATTAGCCATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1098741 141 -  4500979 TGTATGC-AAAACTTTACGGTT-C-TGGACATTCTT---CGGCTCCAATGATCTATTTCGTCATGCATGTCAAT-AAA-------CGTTATCAGTACTCAAAAATAAGCACGCCC----------TGTATTCACAGGA-AACCTATGCAGAA---ACGTATTAGCAATA
i caeRem4.Crem_Contig0  I 215 C 0
s caeSp111.Scaffold630  14857968 145 - 20921866 TGTGTAC-TAAACTTTACGGTT-C-TGGGCTTTCTTCGGCGGCTCCAATGATCTATTTCGTCATGCGTGTCAATAAAA-------CGTTATCAGTACTCCAAAATATGCACGCCC----------AAAATTTCACAGG-AAACTATGCAAAA---ACGTATTAGCAATA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386566 146 +  4147112 TGTGTAC-TAAACTTTACGGTT-C-TAGACATTCTCCGGCGGCTCCAATGATCTGTTTCGTCATTCGTGTCAAT-AAA-------CGTTATCAGTACTCAATAATAagtacgccc---------aaaaatttcaCAGGAAAACTATGCAAAA---ACGTATAAGCAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   372243 145 +   375229 TATA-GC-CAGACAATACAATT-TACAAACATTGTC---TAGCTTCAATGATCTGTTTCAACACACG-----AT-GAA----AC-TGTTATCAGTTTTCCAAAATAAGCACGCCCCGATTCCTGATAAATTATAC----AAACACTACAAAA---ATGAATTAGCAATT
i caeJap4.Scaffold17084 C 0 I 47

a score=10724.000000
s ce10.chrX              4114987 51 + 17718866 ---------C-CAAGTGAACACTCTCG------AACTA---------ACACTCAAGTTTTGT------------TGCACACTCGCACA
s cb4.chrX               9220297 75 + 21540570 GCAAAAACTA-TCTCGGAACGCTGTCAAACTGCAAATT--GGTGTAGACACTCAAGTTGTGTGACTGGCATACAGG----------CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1098882 48 -  4500979 ---------C-TCCGGgaacactctca------aaatt--ggtgTAGACACTTAAGTTGTGT------------TG----------CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14858113 51 - 20921866 ---------CGGACAGGAACACTCTCG------AAATTTCGATGTAGGCACTTAAGTTGTGT------------TG----------CA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386712 49 +  4147112 ---------C-GACAGGAACACTCTCG------AAAATG-GGTGTAGACACTTAAGATGTGT------------TG----------CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   372388 47 +   375229 I

a score=359488.000000
s ce10.chrX              4115038 581 + 17718866  
s cb4.chrX               9220372 590 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1098930 551 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  14858164 551 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2386761 551 +  4147112  
i caePb3.Scfld02_0      C 0 I 393
s caeJap4.Scaffold17084   372435 532 +   375229  
i caeJap4.Scaffold17084 I 47 C 0

a score=910.000000
s ce10.chrX              4115619 1 + 17718866 A
s cb4.chrX               9220964 1 + 21540570 A
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1099487 1 -  4500979 A
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  14858715 1 - 20921866 A
i caeSp111.Scaffold630  C 0 I 271
s caeJap4.Scaffold17084   372967 1 +   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2387312 393 +  4147112 I

a score=1115.000000
s ce10.chrX              4115620 6 + 17718866 TCTATT
s cb4.chrX               9220965 6 + 21540570 TTTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1099488 6 -  4500979 TTTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   372968 6 +   375229 TAAATT
i caeJap4.Scaffold17084 C 0 I 144
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I

a score=-6381.000000
s ce10.chrX              4115626  31 + 17718866 AAAT-------------------------AACTGCTGATTT-TTGGTAGATATCTCC------------------------------------------------------
s cb4.chrX               9220971 111 + 21540570 AAATTACAGTCCCGGTCAATAAGATCTACAACTGTATAttttttggtagattttcgacctttttgacctttttaaggagtctggagctcggctgtcaagttttcaatctat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1099494  27 -  4500979 ATACTTCTATCTTTG--------------AAAAGCATATTC----------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 125
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I

a score=-2629.000000
s ce10.chrX              4115657 439 + 17718866  
s cb4.chrX               9221082 586 + 21540570  
i cb4.chrX              C 0 I 121
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I
e caeRem4.Crem_Contig0   1099521 125 -  4500979 I

a score=0.000000
s ce10.chrX              4116096 151 + 17718866 TTTATTCCTATATTTCGCAAACTTAATTTTTGTTTTGGTAAATTTTCCAACAGTAAGTACAATCAAGTAACACGATTTAGGTGCCTATTGACTGAAAATGTGTTTAAATCAACACTGAAACACTTGATGATTTACTGAGACGTGCTTTGCT
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e cb4.chrX               9221668 121 + 21540570 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I
e caeRem4.Crem_Contig0   1099521 125 -  4500979 I

a score=616.000000
s ce10.chrX              4116247 109 + 17718866 AAAATTTTTGATTTCAGGTACATTTAGCACCTTATTTCAAAAATTTGA------AATGTCAAACTTTTGAAAATTTTTTAAAAGT--TTGAATCACATGTTGAAAGTGATTAGTTCT
s cb4.chrX               9221789  91 + 21540570 aaaaattttg--------------tagtg------ttcagaaatttgacagcTAAGCTTCAGTCTCCTGAAAATAATCGGAATTTCctaaaatca---attgaaa---atcagtttt
i cb4.chrX              I 121 I 17
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I
e caeRem4.Crem_Contig0   1099521 125 -  4500979 I

a score=0.000000
s ce10.chrX              4116356 18 + 17718866 GGTCAATTTGGAAGTGTA
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e cb4.chrX               9221880 17 + 21540570 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I
e caeRem4.Crem_Contig0   1099521 125 -  4500979 I

a score=-322.000000
s ce10.chrX              4116374 98 + 17718866 CGCTTCTGTAGTGCACTGGCTACCTTTTTTGCCGAAAAAAAAAAACATATTTTCCTTGTAAAAATCCTTTTTCCTCAATTTGAAGTATTTTAAAAGAA
s cb4.chrX               9221897 66 + 21540570 TGCTACTGca----actggaaatttt---------aaaaattagacaT---TTTCACGTAGAGTTCACATTTTCCC--------GTATTC--------
i cb4.chrX              I 17 C 0
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I
e caeRem4.Crem_Contig0   1099521 125 -  4500979 I

a score=-287.000000
s ce10.chrX              4116472 49 + 17718866 CTGGCAGAAAATCTTAGTCACTTCTCTCCCC--TACAATCTGCTTATCA----TA
s cb4.chrX               9221963 38 + 21540570 ---------------AATATCTTTCTCATCT--AGCAATTAACATATCAAACGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1099646 55 -  4500979 CTATCAGAAAACGCAAATTTTCTTTCCACCTTACGCAATATCCGTTTCAATAACA
i caeRem4.Crem_Contig0  I 125 C 0
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeJap4.Scaffold17084   372974 144 +   375229 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I

a score=-347.000000
s ce10.chrX              4116521 11 + 17718866 TTAAACCAATT
s cb4.chrX               9222001  4 + 21540570 TTA-------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1099701  4 -  4500979 TGA-------T
i caeRem4.Crem_Contig0  C 0 I 5
s caeJap4.Scaffold17084   373118 11 +   375229 TTAAACTAATT
i caeJap4.Scaffold17084 I 144 C 0
e caePb3.Scfld02_0       2387312 393 +  4147112 I
e caeSp111.Scaffold630  14858716 271 - 20921866 I

a score=171642.000000
s ce10.chrX              4116532 334 + 17718866 TTCCAGCTGCTCATCCTTTACGTCATCTGCTTGGCATGTCTTATCATCTCAGCTTCTCTCGAATCGTGGTATATTTCAAGGTCTGGAACCACGGGAAAACATCCCGATCACGTTTATCACCCGCGTTTCATAGCTGTAACAGTGAGTTGATC----------------GTTTTTTTTCG--ATTATTGAAAATCAACATTAGTGTAAAATG--ATTAAATGCTATTTTCAGGTCTTCAACTGGCTTCTTGTCGTGTCTTACATTGTCTTAATATTAGTCACGTTCTTTTTCGTGTAATTT-------------TTTTCTTCATTTGCAAGGATTTCA-----CAGTTGTCTTTTGCGT---------TTATT---------------TTCAATTTC
s cb4.chrX               9222005 313 + 21540570 TTTCAGCTGCTCATCCTCTATGTCATCTGCTTGGCGTGTCTAATCATTTCAGCCTCTCTTGAGTCTTGGTATATATCCAGGTCGGGCGAAAACGGAAAACATTATGACACCGTTTTACATCCACGTTTTATTGCTGTGACGGTGAGTTGa------------------aatatttc-----tatttttctaattatga--------AAATG--------TCCAATTTTTAGATCTTCAATTGGCTTCTCGTGGTGTCCTACATCGTTCTCATATTAGTCACATTCTTTTTcgtctaaa----------aaattatttctcaaGT-----GGATTCTT-----TCCTTGTTCCTTTCAT---------TTCCC---------------tacttcttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1099710 328 -  4500979 TTTCAGCTCCTCATCCTCTACGTCATCTGCTTGGTGTGTCTAATCATTTCAGCCTCTCTTGAGTCGTGGTATATATCGAGGTCAGGAACTAATGGAAAATATCCGGACCCCGTTTACCACCCACGTTTCATTGCTGTCactgtgag--------------------------tttt-----ttttctgcaaattatTGCAA--ACCAAATGAAtataaatctcattttcagatcttcaattGGCTTCTCGTCGTGTCTTACATTGTTCTCATATTAGTCACAttcttctttgtgtaaatc-----ttcgaatggtttctttttt-----gatttcct-----tcccttattttttctt-----catattacc---------------ctcaatttc
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  14858987 332 - 20921866 TTACAGCTGCTCATCCTCTACGTCATCTGCTTGGCTTGTCTAATCATCTCAGCTTCTCTTGAATCATGGTATATATCGAGGTCAGCTTCCGACGGAAAACATCCAGATTCGGTTTATCATCCTCGATTCATTGCTGTAACTGTGAGTTCATG----------------AATAGCTTACA--TTCTAtgcaaaa---------------ata---------ttaattttcagattttcaattgGCTTCTCGTCGTGTCGTACATTGTTCTCATATTAGtcacattcttttttgtgtaaATC-------CCTatgctctctttttt-----attcttcg-----ttttcatttgtttctt-----cacttcattttaatctttcattcaaaaaatttc
i caeSp111.Scaffold630  I 271 C 0
s caePb3.Scfld02_0       2387705 347 +  4147112 TTTCAGCTGCTCATCCTCTACGTCATCTGCTTGGCATGTCTAATCATTTCAGCTTCTCTTGAGTCGTGGTATATTTCGAGGGCATCTACTGGCGGAAAACACCCAGATAGTGTGTATCATCCGCGTTTTATTGCTGtaactgtgagtttttt----------------tgaatcttacACGTTCtttgcaaaaaagag--------agaaa---------ccaattttcagatcttcaacTGGCTTCTCGTCGTGTCTTACATTGTTCTTATATTAGTCACATTCTTCTTTgtgtaaatcaaaaaatattataatttCTTGGTT-----TCTCTTTGCTTTATTTTCACAAGTTTCGT------ATTTTACCCcaattcttc-----aagttttca
i caePb3.Scfld02_0      I 393 C 0
s caeJap4.Scaffold17084   373129 337 +   375229 ---CAGCTGCTCATCCTCTACGTCATTTGTCTCGCGTGTCTTATCATTTCTGCTTCTCTCGAATCGTGGTATATTTCGAGGTCAGCAAGCGATGGAAAACATCCGGACACCGTCTATCATCCTCGATTCATTGCAGTCACGGTGAGTGCATCACCAAAAAAGTGTgcatctattttatt--ttttctgc-------------------atC--------------TTTCAGGTCTTCAATTGGCTTCTTGTCGTGTCGTACATTGTTCTCATATTAGttacattcttttttgtttaattt-----------tgatttttctttc-----cacatttt-----CCACCAGATCAAACATAATGCAATCATCCCCCAAATCTCAaagttttcaacttt
i caeJap4.Scaffold17084 C 0 I 328

a score=-7814.000000
s ce10.chrX              4116866 208 + 17718866 AAATT----CATAATTCAATCTCTACAATCTCAGCACTTC--CACTCTTTATT--------TTGTTTTTTTGAAC-----TCACACAAATAAAT-TTTTTTGCTTTTTTTTTCTTTTTTTTTCAATTTCACTGACCGGAACTT-TTTTT-CATTTCCATA------------------------------TATAGC----CG------CTGTTTAGAGC-------TCGA----------------------------TTACTTTTAGATATA-AAATCTAGAC--AACTG------------AGTTCACGTTTTCTTGT-
s cb4.chrX               9222318 213 + 21540570 aaaatcaaacaaaattcaatttccacaatctcaacattttgtcatCCTGAAAT--------AAATTTCGCttcgctattttttttcaaaatgaaaattgctACA------------------------TTTTGACCGGAAACA-TATTC-AATCACCAAGTTA--------------------------TTTtagtgttttg------tttttttgatc-------TCTA------------------CTCCCTGGACCAATTTATGCAATGGTACATTTACCC---ATTC----CCa---------caaatcttttcaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100038 240 -  4500979 aaattcaaacatAATGCATTCTCCACAATCTCAAACCTCtgtcattttaaaaa--------ttgtttcgtTTAAC-----TCTCACGAATAAAAAAGCGTTGCAA----------------------GTTTGGACCGGAAATA-TATTC-AATTACTATA------------------------------TATAAcacttcc------tctttttcatcaGAAGATTCCAGCTATCAAGCTTTGTGAGCCCCCAGTTTCCACTTCTCGAGTTG-AGACTCACTCTGAATCA----CCAGATT--GTCCGTTTTTTCCCTG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859319 258 - 20921866 aaattcaaacatAATGCAATCTCTACAATCTCACAACTCcgtcatttt-gaatattc----ttgTTTCGTTTAAC-----TTcactgaatgaaa-aaagttgcaA------------------AATTGTTCCGACCGGAAACATTATTTTCATCACTAATACCATCGATTTCCT-TTTGAACCAGCTGCTTGGGGTCTAGTG------TGAGCCCATTC-------TTCA-----------------GCTTTCAATctgagtttttttaattt-tgaatcatcT--GATTGTTCATTCGATTTggttccttttttttcggt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388052 261 +  4147112 aaattcaaacataaTGCAATCTCGACAATCTCA-GCCTCTGTCATTCTggaatattcttttttgtttcgattaAC-----CTTCATGAATAAAACAAAGTTGCAA------------------AGTAGTCATCACCGGAAATTCTATTCTGATCGCTAATATAATATACTTCCTCTCCAAACCAGCTGCTTCAAGCCTTTTGAACCCTTCAACTCACTC-------TTCA------------------CTTTCAGTCTCCGCTTTT----TCC-TGAGTCATTT--GATTG----TCCGATTccgtatatatttttttggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   373466 328 +   375229 I

a score=100678.000000
s ce10.chrX              4117074 192 + 17718866 CAAAAATCATTAATCACAAATGAAAAATTA-----------TTCGTTTGCAAGAT---------AGATTAAAG--------CGAAAACTTT-CCCTTTGCCAATCCCTT--TTA---------TTTTTTGCTCTCTGTGGTC------CCGAGTACAAAATCATTCCCCGAGGTAAAATTCTTCACCATTTATCAGGCAAAATGTGCGTCTTTT------TGTCTCAA------ATCTTTGCAGCTTTGC
s cb4.chrX               9222531 183 + 21540570 aaaaaatcattaatcttgaataaaaaaa---------------attctgcaagAA---------A----CGAG--------CATCCATCGT-TCTCCtcgc---ttttt--tta-----------ttttgctcTCTGTGGTC------CCGAGTACAAAATCATTCCCCGAGGTAAAATTCTTCACCATTTATCAGG--------ACGTCTTTTTTGGTGTGTCCCGATATCTTTTTTCTGCGGTGTTGC
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   1100278 199 -  4500979 CAGGAAACATTCATCacaaatgaaaaagtt-----------gtgtttTGCAAGAT---------AGATTAAAg--------caaaaacttt-tcttttatc---TCTTC--TCGTTCCCC---GTTTCTGCTCTCTGTGGT-------CCGAGTACAAAATCATTCCCCGAGGTAAAATTCTTCACCATTTATCAGGAGAAGTGTACGCCTTTTTC-ATGTGTCCTGA------TTTTTCGCAGCTCTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859577 203 - 20921866 cAGAAATCATTAAtcacaaatgaaaaacag-----------ctTTTCTGCAAGAT---------AGATTAAAC--------CGAAAACTTT-GCTTTCATC---TTCGG--TTGTTCTCCCGTTTTCCTGCTCTCTGTGGT-------CCGCGTACAAAATCATTCCCCGAGGTAAAATTCTTCACCATTTATCAGGAGAAGTGTACGTCTTTTTTCATGTGTCCCGA------TTTTTTGCAGCTATTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388313 185 +  4147112 caaaaaacatTAATCAC-AATGAAAAACAG-----------CTCTTTTGCAAGAT---------AGATTAAGG--------CAAAAACTTTCGCTTTCATC---TCCCG--TTGTTCGCC--TTTTCCTGCTCTCCGTGGT-------CCGAGTACAAAATCATTCCCCGAGGTAAAATTCTTCACCATTTA----------------TCTTTGGTTGTGTGTCCCGA------TTTTTTGCAGCTCTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   373794 218 +   375229 CTAAAGTAATTTATcaagagtgaaaaaaaaggatttcctcttttatttgcaaaattcaaaaaaaaaattcaaaaaggaTTCCTACAACTtt-actttcaat---tttttacttG---------TTTCCCGCTCTCTGTGGCCAATGGTTCAAGTACAAAATCAGTCCCCAAGGTGAAATTCTTCACCATTTATCAGGACAAGTGCAAGACGTTT-------------G------CTTTCTGCTACTTTAT
i caeJap4.Scaffold17084 I 328 C 0

a score=-2898.000000
s ce10.chrX              4117266  9 + 17718866 ---------CCGAACATG-
s caeRem4.Crem_Contig0   1100477  9 -  4500979 ---------TCTCGCGCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859780  9 - 20921866 ---------CCAAAGACA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388498  9 +  4147112 ---------TCTAAGACG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374012 19 +   375229 CTCAGTATTCCGTCGCCAA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9222714 21 + 21540570 I

a score=1333.000000
s ce10.chrX              4117275 56 + 17718866 AAATACAATTTA--TGTTGCTGACTTTGTTGCTCAGGCGT-----TTGATTCTAACTCAGATT
s cb4.chrX               9222735 53 + 21540570 AAATACTTTTCTCGTGTTGCTCACTTC-----TCGAGAGCCG--CTTGG---CATTTCAGATT
i cb4.chrX              I 21 I 7
s caeRem4.Crem_Contig0   1100486 50 -  4500979 AAGTAGTTTTCT--TGTTGCTGACTCT-----CTGAGCTCTG---GTGg---catttcagatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859789 41 - 20921866 AAATACTTTTCA--TGTTGCTGACTTTG--AGCCGAGCTCCG---TTG---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388507 37 +  4147112 AAATACTTTGCA--TGTTGCTGACTTTG--GACTTGGC-------TTG---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374031 41 +   375229 AAACACTTTTCA--TGTTGCTGACGCTC----CTAGGCTCTCAGATT----------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-4401.000000
s ce10.chrX              4117331 21 + 17718866 ATATTTTTACATATATAATAT-
s caeRem4.Crem_Contig0   1100536  6 -  4500979 ---------------gaaaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859830 18 - 20921866 GCATTT---CAGATTGAAAGA-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388544 18 +  4147112 gcattt---cagatgaagaaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374072 15 +   375229 -------AGGAgattacagaaa
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9222788  7 + 21540570 I

a score=-14384.000000
s ce10.chrX              4117352 76 + 17718866 GATTGAAGCAAAAAGCATTTAATC--------------CGGATCTTTCATCCATCTTAACATTTTATTATTGAA------------------TTCTATACAAAAGAAA
s cb4.chrX               9222795 67 + 21540570 GATTAGAG-GGAGCGTTtgtaatc--------------ct----ttttttcttgttt--ctctttttcatcaga------------------gtt--caagaagagaa
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1100542 50 -  4500979 gatTAG-G-AAAGAGCATgtaatc--------------tc----tttt------------tcttttggataag--------------------------tgaataaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859848 58 - 20921866 GATTAGGGCAAAAAGCTTGTAATC--------------CG----TTTCATCTTT------CCTCTGCCCATGG--------------------------AAACCAAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2388562 58 +  4147112 gaTTAGGGCAAAAAGCTTGTAATc--------------cg----ttttcttatt------tttctttggatat--------------------------caggaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374087 89 +   375229 ---------aaaaaacacgcacCCAAGCCAAAGCCGCACT----ATTTAACACC------GTTTCATAGCTGAGAAGATGGAGAGTCAGTCCGTCCATCCAAAAACAA
i caeJap4.Scaffold17084 C 0 I 117

a score=-15845.000000
s ce10.chrX              4117428 25 + 17718866 ACACTTGTTTTCAACTTGTTTAAAA--------------------------------------------
s cb4.chrX               9222862 28 + 21540570 aaat---------------gaaaag---agcgAAACACTTTCGAAA-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100592 32 -  4500979 aaattt--------ttagagttaaa---aatgaaacactT---AGT-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14859906 35 - 20921866 TCAC---------------GTAAAAACCAATGgttcaa-----agttt--------------tttgaaa
i caeSp111.Scaffold630  C 0 I 127
s caePb3.Scfld02_0       2388620 51 +  4147112 acat---------------ttagaa---aatgtttcagttcTTAGTTCGCTGACGCGTGTAATCTAAAA
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17084   374176 117 +   375229 I

a score=-8158.000000
s ce10.chrX              4117453 108 + 17718866 -------GAATTCACATTTCTTAT-TAACTCTCTA---------ACATTTACTAA----------GTATATTTTTGACACTTCTAC----G--TCAATCTTGAAAAA-TTAGCAGTGAAAAGACA-CCAGAAATGGA--GAGCGG
s cb4.chrX               9222890 118 + 21540570 -------GAA---AAAGGTGTTTTAAAGATTTGTG---------ACATTAATTTATTTTCGATACATTTGTTTTT--TACGTCAGCTCCGG--AATGTCCGAAAAGCAGTGTCAGCCCAAAAACGAGGATGAGTGGACATG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100624 110 -  4500979 -------GAA---AACGTTATTTT-AGGATT--------------AAATAATTAACTATTAATA-ATAACAGTTT--TACGTCAAC----G--ATAGTTCCAAAGAC-TTTTAAGATTATAAAACACGATGAGTGGACGGAAAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2388674 123 +  4147112 gaatttcgaa---gatttttctCT-AGACTTCAAATAAGAAAACGGAATAATTAG----------ATAAACTGTT--TACGTCAGT----GATATATATCCAAAAAC-TTTTAAGCTTGAAAACG-GGATGAGTGGACATAGCAA
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17084   374176 117 +   375229 I
e caeSp111.Scaffold630  14859941 127 - 20921866 I

a score=515.000000
s ce10.chrX              4117561 18 + 17718866 AAAAGATATGCGACTCAG
s cb4.chrX               9223008  8 + 21540570 -------TTACGTGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100734 15 -  4500979 AAGAGATTTACGTGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2388797 15 +  4147112 AAAAGATATACGTGC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374293 12 +   375229 AGCAGATATGCA------
i caeJap4.Scaffold17084 I 117 C 0
e caeSp111.Scaffold630  14859941 127 - 20921866 I

a score=58585.000000
s ce10.chrX              4117579 115 + 17718866 CGGCTCACTTGACTAATCTTGTAATCCGCTAG------TGGAAA-----AAGAAGCGCGAGAAGCATCTTGATTGATTTTCATCATTC------GCACAAAAATAC---------CTTCCCTCA---------------TTGCCATAA-------TGTTCTTT-------
s cb4.chrX               9223016 140 + 21540570 CGAGTC-----GCTAATCTCCTAATCCTTCCG-AAAGGGAGAAAGCAAGAAGAAGCGCGAGATGAATCTTGATTGATTTCTATCATTCCTCTCTCCACCAAAAAATACCTCCTCACT--CTTCA---------------TTGTCATTCTTTGGcatgttcctt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100749 126 -  4500979 CGACTCACTTGACTAATCTCGTAATCTGCCAG-GAAAGGAGAGA-----AAGATGCGCGAGAAGAATCTTGATTGATTTCTTTCATTC----CTccacaaaaatat---------tt--cttca---------------ttgCCATTC-TGAGCCTGTTCCtt-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14860068 126 - 20921866 CGGCTCTCTTGACTAATCTTGTAATCCGCTAGTGATGATAGAGA-----AAGAAGCGCgagaaaaatctagattgATTTCCATCattcctttc-----aaaaatac---------ct--CTCCG---------------TTGCCATTC-CAAGCATGTTCTCT-------
i caeSp111.Scaffold630  I 127 I 27
s caePb3.Scfld02_0       2388812 128 +  4147112 CGACTCACTTGACTAATCTTGTAATCCGGCAGCAACGAGAGA-A-----AAGAAGCGCGAGAAGAATCTTGATTGATTCCCATCATTCCCCTCTC--TGAAAATAC---------CT--TCTCA---------------TTGCCATTC-CAAGCCtgttcctt-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374305 136 +   375229 CAACTCACTCGACTAATCTCGTAATCCGGCGG--------CAAA-----GAAAAGCTCGACA---ATCTTGATTGATTTCTTTCAGTTTTCTC---ATAAAAATAC---------CT--TGCCAAGAAACAAAAACGGGTCGATActc----gttttttctttctttttt
i caeJap4.Scaffold17084 C 0 C 0

a score=-4952.000000
s ce10.chrX              4117694 33 + 17718866 --CACTATTTTTTCATCTCCTCTGTTAGAATCT--CG
s cb4.chrX               9223156 30 + 21540570 -----ttttctcttttctcagCTCTCTGACTTTTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100875 19 -  4500979 -----tttttGC---------CTCTTGGATTTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2388940 27 +  4147112 -----ctcttttttttcttggcttTC-GACTCT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   374441 31 +   375229 ttctgtttttttttcattcatcgTTC--GCTCA----
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14860194 27 - 20921866 I

a score=6724.000000
s ce10.chrX              4117727 18 + 17718866 -------TTCACATGACAAGCGCCA------
s cb4.chrX               9223186 18 + 21540570 -------GCCACATGACATGCATAC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1100894 16 -  4500979 ---------CACATGACATGCGTCC------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  14860221 18 - 20921866 -------TTCACATGACAAACGCCA------
i caeSp111.Scaffold630  I 27 T 26846
s caePb3.Scfld02_0       2388967 18 +  4147112 -------TTCACATGACAAGCGCCC------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084   374472 31 +   375229 CTCACTCTTCCCATGACAAAAAATCTGGCTA
i caeJap4.Scaffold17084 C 0 C 0

a score=54719.000000
s ce10.chrX              4117745 67 + 17718866 -AAAGTGGTCGAAC------ATAAATTACTAACTGCCATC-AACATTACTCATTCATGCTAATCGAGCAACTCTC
s cb4.chrX               9223204 61 + 21540570 -AAAGTGGTCGAAC------ATAAATTAG-CGT-----TT-TCCATTACTCATTCATGCTAATCGAGCAACTCTC
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   1100913 67 -  4500979 -AAAGTGGCCGAAC------ATAAATTAGTCGTTGCCATC-TTCATTACTCATTCATGCTAATAGAGCAACTCTC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  14833393 74 - 20921866 -aaaattattgaacaacctaataAATTAGTTGTTGCCATCAAACATTACTCATTCATGCTAATCGAGCAACTCTT
i caeSp111.Scaffold630  T 26846 C 0
s caePb3.Scfld02_0       2388989 68 +  4147112 -AGTGGGGTCGAAC------ATAAATTAGTTGTTGCCATCAAACATTACTCATTCATGCTAATCGAGCAACTCTt
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084   374503 68 +   375229 ACAAGTGGTAAAAC------ATAAATTAGCCTTCGCCACC-CGCATTACTTATTCATGCTAATCGAGTATCTCTA
i caeJap4.Scaffold17084 C 0 C 0

a score=1939.000000
s ce10.chrX              4117812 6 + 17718866 AGCGCG
s caeRem4.Crem_Contig0   1100980 6 -  4500979 AACTTT
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold630  14833467 6 - 20921866 AACCCT
i caeSp111.Scaffold630  C 0 I 15
s caePb3.Scfld02_0       2389057 6 +  4147112 aactct
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17084   374571 6 +   375229 AACTTG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9223265 30 + 21540570 I

a score=252546.000000
s ce10.chrX              4117818 303 + 17718866 CCCGCTATCG--ATCCTCTTCATTTTTTATTAACGCCTTGTGCCCTTCAATC-TACTT----------AACA---------------------TTCCTTTC---AATCTGGCTAGTTTTCCCATC-TTTA-TTTTGC--TTACAG-AAAA-----------ATGGATAGCCCAAAAAGTCCTCGAAGCCCAAAAGTTCTTTCTCATCATAATTCAATGAAAAGTTTACGGTCAGTTCGGAGTCAGAAGAGTATGCGTTCGTTGAAAAGTCAAAAAAGCACACAGAGCATTCGAATATTCAATCATCACCACGATACTTATCAGACTTGCTTTGGTTTCATGCACGTAAAGGTTAGT
s cb4.chrX               9223295 328 + 21540570 CCCGctatc-------ttctcattttttattaacGTCTTGTGCCCTTCCACG-CACATCCACCCTCCAAATAAGACACAAAGAagcattcttctttttttctcgaatctcGA---TCCCAaatct-tttgtttttgtgGTTTCAG----------------ATGGATAGCCCAAAAAGTCCTCGCAGTCCGAAAGTTCTCTCCCATCACAACTCAATGAAGAGTTTACGATCAGTACGAAGCCAGAAAAGTATGCGCTCGTTGAAAAGTCAGAAGAGTACGCAGAGCATTCGGATATTCAATCATCACCATGACACCTACCAGACTTGTTTTGGATTTATGCATGTTAAGGTAAGT
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   1101000 312 -  4500979 GCCGCTATCT--CgcatcttcattttttattaacGTTTTGTGCCCTTCCACG-CACACTCAACCACAAAACA----------------------TTCCTTCTCGAATCTGTC---TCTTTCAATC-tttgtttttgc--tttcag-aaa------------atggatagCCCAAAAAGTCCTCGCAGTCCAAAAGTTCTCTCCCACCATAATTCGATGAAGAGCTTGCGATCTGTGCGGAGCCAGAAAAGCATGCGCTCGTTGAAGAGTCAGAAAAGCACTCAAAGTATTCGCATATTCAATCATCATCATGATACTTATCAGACTTGTTTTGGATTCATGCATGTCAAGGTTAGT
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold630  14833488 325 - 20921866 CCGACTATCT--CgcatcttcattttttattaacgTCTTGTGCCCTTCCACG-CACACATACActcaaaaca--------------------tttcttttctcgaatCTGTC---GTTT-CAATC-TTTGTTTTTGC--Ctacag-aaaagagagagagagatggatAGCCCAAAGAGTCCTCGCAGTCCAAAAGTTCTTTCCCATCATAATTCAATGAAGAGTCTGCGATCAGTTCGAAGTCAGAAGAGCATGCGTTCATTGAAAAGTCAGAAGAGTACTCAAAGTATTCGGATATTTAATCATCACCATGACACGTATCAGACATGTTTTGGTTTTATGCACGTCAAGGTTAGT
i caeSp111.Scaffold630  I 15 C 0
s caePb3.Scfld02_0       2389082 330 +  4147112 CTGGCTATCT-CcccatcttcattttttattaacGTCTTGTACCCTTCCACGCCACATACGCAtccaaaaac--------------------attcttttctCGAATCTGTC---TTTTCcaatcttttgtttttgc--ctacagaaaaagggagagagagatggaTAGCCCAAAGAGTCCTCGCAGTCCGAAAGTTCTTTCCCATCATAATTCGATGAAGAGCTTGCGATCGGTTCGGAGCCAAAAGAGCATGCGTTCactgaaaagtcaaaaaagtaCGCAGAGTATCCGGATATTCAATCATCATCATGACAGCTATCAAACCTGTTTTGGCTTTATGCACGTAAAGGTTAgt
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17084   374577 290 +   375229 -CACACATCTTCTCCGCCCTCGTTTTTTATTAAAGCCTTGTGTCCTTCCATT-CAC--------TAAAAACA----------------------------TTCGAA---------TCatccaatt-tttgtttttg---tcacAG-A--------------ATGGACAGCCCAAAGAGTACGCGTAGTCCAAAAGTTCTTTCCCACCATAACTCGATGAAGAGTTTACGGTCCGTTCGCAGTCAAAAGAGTATGCGCTCGTTGAAAAGTCAGAAGAGCACACAGAGTATTCGAATATTCAATCATCATCATGACTCATACCAAACTTGTTTTGGATTTATGCACGTTAAGGTAAGT
i caeJap4.Scaffold17084 C 0 T 69570

a score=422.000000
s ce10.chrX              4118121 1 + 17718866 T
s cb4.chrX               9223623 1 + 21540570 C
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1101312 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14833813 1 - 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2389412 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17084   374867 69570 +   375229 T

a score=1638.000000
s ce10.chrX              4118122 3 + 17718866 TTT
s cb4.chrX               9223629 3 + 21540570 TTT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1101313 3 -  4500979 TTT
i caeRem4.Crem_Contig0  C 0 I 257
s caeSp111.Scaffold630  14833814 3 - 20921866 TTT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2389413 13 +  4147112 I
e caeJap4.Scaffold17084   374867 69570 +   375229 T

a score=-759.000000
s ce10.chrX              4118125 4 + 17718866 GCCC-
s cb4.chrX               9223632 4 + 21540570 -ATCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14833817 4 - 20921866 GTTC-
i caeSp111.Scaffold630  C 0 I 120
e caePb3.Scfld02_0       2389413 13 +  4147112 I
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-224.000000
s ce10.chrX              4118129 15 + 17718866 G----------TCTCTCACTAACTA
s cb4.chrX               9223636 25 + 21540570 AATTAAATAATTCTTCAATTAACTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2389413 13 +  4147112 I
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-5882.000000
s ce10.chrX              4118144 126 + 17718866 ------GAT-------------------------TAATTAAGGAGCTAGCATTTTTTTTAAACTGAAACGCTAATATGTTTAGTCTAATGAAGAATGTGTAAATTTTGACGATACATTTTGAATTAACGACCATTGTTACTTCTCTAATAAAAATGT
s cb4.chrX               9223661 130 + 21540570 GTAATTGATATCAATATCAATTGAGTTTTCCTCATAAATCAAGTTC-ATCGGTTTA---------GGAAATAAATGGATTAAGTTTA------AACgt---aattcttg------tttttctattgtttatttctttaagtttttt--tcaaaatgt
i cb4.chrX              C 0 I 125
s caePb3.Scfld02_0       2389426  91 +  4147112 ------gat-------------------------taaatcAGGTTTGAGCAACTAA-----------ACACGAATTAGTTATGTTAA------AATGTGTAACTTTTCA------AACTGGCACAGTGAATAACTAGCAGctccc------------
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-1686.000000
s ce10.chrX              4118270 130 + 17718866 GGGAAGAAAAAGTTTTGGA-----TTCCCAATGTGCTTTTGGCTATATCGTAACATGTTAAAAAGGTAATCTGATTATCTGTAAAGGAAATAATAAAAATCAGCATGAAATTCCACTAGCACGATTAAACTACAC
s caePb3.Scfld02_0       2389517  79 +  4147112 -----gaaaaa--ttcgaacCTAGTTCCAATCATTCTT--------------------------GGTGACTTG------------GGATATAATTAAGTT----------TTTCTATGCTAAGGTGAAACGTcg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e cb4.chrX               9223791 125 + 21540570 I
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-14522.000000
s ce10.chrX              4118400 257 + 17718866 TTAAACCTTTCCC---------------------------AA-----------CTG---------AAAAA-AACGTTCTAGATATTGAAAAGTTGAGCATTCTTCAA--TCAT-----------------------------------GAATTCAAAATGACGCatatatatatatatatata---tatatatG-------------AGAAATGCAGTTTTGTGATCGAATTTGTGAAACAGGTTAGGGAAAATATAGTGCTATTTTGTTCAAATCAG--GGTAGCGTTTTATTCAAAAACAACTTTTT---TTTTTGACCCAGTTCCATATGAGAACCAAAAAAACGCTGCTTAGATAAATT
s cb4.chrX               9223916 292 + 21540570 TTGGACCTTCCCTTCCAGCTGAATTTTACTgttcctttaagagatatcgtTAATTGGTATCGtgtaaaaatgattttcataacatc------ttcaacattttgaaagtttttggatCATTGTTGTTCTCCCAGTaaccgatataattgagctcaaag-ggcacGTATAGAGAAAAATTTATAGCCTCTAAATGAATTTTCGACCGCGAAAAT----TATTGCCAT-------------TAGgtcaagaaaa--ataattcaaac---caaaaattagCAGGTAATTTTT--------GATAGTTCTTC---TCTATATctcattc-------------------------------gaaatt
i cb4.chrX              I 125 C 0
s caePb3.Scfld02_0       2389596 140 +  4147112 ----------------------------------------gaaatat------ttg---------aaaaataatcttttaaatatt-----------catttttcaagatttt----------------------------------------------------tat-----aaactttttaaaatcttGATG-----------------------TGTTGTTAT----------------------------ACAAT-----------GAAATTAGTagcaagtttttt-----gaaataaactttcaCGTCTCTGACTGGTTC---------------------------------AATT
i caePb3.Scfld02_0      C 0 I 53
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-176.000000
s ce10.chrX              4118657 95 + 17718866 GGGACAAATTATGAAAAGTATTTTAAAATA-AAGCCG-----TCGTAGTATCAGTGTTTTTGGAAAGAAACGTGCTGATTTCCAGTGACTCAAACTCTGAG
s cb4.chrX               9224208 80 + 21540570 --------ttgtgaa----acttTCAAATACCAGTTGCTAGATGGTGATATC----CTTTTGTCGAAACAAATCACGAGTTC-----ATTTAAATGCTGAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2389736 53 +  4147112 I
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-3355.000000
s ce10.chrX              4118752 60 + 17718866 CAAACTAAAAAATCAATTGTGGACAAATTTTAGCACTTTATTAGACTGGTTCCTTGGTTT---
s cb4.chrX               9224288 32 + 21540570 -------------CGATT-----TCAACTGTGGCTTGTT-------AGGGTTCATTA------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2389789 40 +  4147112 -----------------------CAAACTAGAGCATGTTATGATAAAGATTTCAGcctcttct
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeSp111.Scaffold630  14833821 120 - 20921866 I
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-248.000000
s ce10.chrX              4118812 18 + 17718866 TCTGAAAAAAAAAACA------AT
s cb4.chrX               9224320 23 + 21540570 -TTAAAATAAATTAACTCCGAAAt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14833941 20 - 20921866 tctgaatgaaattcaa----aatt
i caeSp111.Scaffold630  I 120 C 0
s caePb3.Scfld02_0       2389829 17 +  4147112 tttgaaacaaatcacA-------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   374867 69570 +   375229 T
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=-5001.000000
s ce10.chrX              4118830 13 + 17718866 -------TTTTTCT----GATAAT
s cb4.chrX               9224343 11 + 21540570 -------actttcccatt------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14833961  7 - 20921866 -------tatttct----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2389846  7 +  4147112 -------CATTTGT----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   305297 13 +   375229 ttttctaaatttt-----------
i caeJap4.Scaffold17084 T 69570 C 0
e caeRem4.Crem_Contig0   1101316 257 -  4500979 I

a score=339612.000000
s ce10.chrX              4118843 622 + 17718866  
s cb4.chrX               9224354 805 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1101573 629 -  4500979  
i caeRem4.Crem_Contig0  I 257 C 0
s caeSp111.Scaffold630  14833968 614 - 20921866  
i caeSp111.Scaffold630  C 0 I 15
s caePb3.Scfld02_0       2389853 642 +  4147112  
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17084   305310 665 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-1749.000000
s ce10.chrX              4119465 10 + 17718866 ATTTGT-----TTTC
s cb4.chrX               9225159 10 + 21540570 ATTGAT-----TATT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   1102202  5 -  4500979 GTT----------TT
i caeRem4.Crem_Contig0  C 0 I 9
s caeJap4.Scaffold17084   305975 15 +   375229 gtttgtatGTATGTC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2390495 14 +  4147112 I
e caeSp111.Scaffold630  14834582 15 - 20921866 I

a score=51531.000000
s ce10.chrX              4119475 284 + 17718866 TGTATATGTAACGA--------TAATCA----------CACGAGTCATTTTTCGTACATTTTTGT-------------------------ACATT----TAAATGTATTTATT-------TATTTTGCTTGTTTTT-------TTTGACTTCAATATATTAACCCGA-------------------ACAAGAAATTGACAGAATTATT---------------------------AAA---------ACTAAAAAATT----AAATGAACTCC-----TATTTACAGCATGTTGTTATTGTGAGCGTGTAAAGTGCATCGTACACATTCCGAGTTAACGATGTTTCACCGGCTTGTCCCATTCTGATCAGCTGTTCTCCATTGTGACCATAGTCCTGAAATAGAATTGA
s cb4.chrX               9225178 266 + 21540570 CGCTTATGTAACGA--------TAATGAC-----CAGCCACGTgttatttttt---------------------------gcaa--taaGGATCT----TTAATA--TTTAT----------TTTAACTCGTTCTTGGAACCAAAATACTTCAATAAAATTATGCG--------------------A--AAATGTAC--------------------------------------AGAC-----ATTGGTGGTGTTT--------------------CTATTTACAACAAGTCGTAATTGTCAAAGTATACAAAGCATCATAAATATTTCTCGACAGCGATGTTTCACCACCTTGACCAATTTTGATCAGCTGCTCGCCATCTCGATTTGTATCCTGAAATAGAACTGG
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1102216 342 -  4500979 TGTATATGCACCGA--------TATTGGC-----AATCCACGTGTTAATTTTCActcattattttga-----tttttcgaacaa--aagaAATTT----GTAATG-CTTTATTATACACATATTTAGTTTGTTTTTAAGATT-GAATACTTT-ATaaaaaaaCCCG--------------------ACCAAATGTACAATGTATTCAGAGTCCACCGAGATACAATTCTCCtctgaaac-----attatttctGTATT-----------CTTCAG--CTATTTGCAGCATGTAGTAATCGTTAGAATATACAGAGAATCATAATTATTCCGTTGCAAAGATGTTTCTCCGCCTTGACCTTCTATAATCAGCTTGTCGCCGTTTTTTGCAGTGTCCTGAAATGGAAAT--
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  14834597 321 - 20921866 tatatatgtATCGA--------TACTGAG-----AATCCACGTGTTTCATTTAAACTGAAGCCCT-------TCTTTCGGTT--------GAATT----GCAATAACTTTATTATATTTacattttgattgtttttagTCGC-AAATACTTTAATAA----ACCCG------GCATGAAACAATTGacaaaatattcaaagaGTTGGT---------------------------GGAT-----ACTGTTTCAGAATT------GTGAACTTC-----TATTTACAGCATGTTGTTATCGTTAGTGTATACAATGCATCATAAACATTCCGTGTCAGTGACGTTTCTCCAGCTTGACCCATCATGATCAGCTGCTCTCCATCTCGATCAGTATCCTAAAATAGAACA--
i caeSp111.Scaffold630  I 15 C 0
s caePb3.Scfld02_0       2390509 324 +  4147112 TGGTTATGTAACGA--------TAATGGC-----TTCCAAcgtgttttattttgaatgatgaCTTGATACCATTGTATGGTT--------GATCT----CAAATAACTTCATTATatccatattt---ttgtttttagtctC-AAATACTTAAATAA----ACCCGAAGTGCGCATAAAAT-----ACAAAATATTCACAGAAATCAG---------------------------AAAC-----TCTATGCTAGA-----------GAACTACAG--TTATTTACAGCAAGTTGTTATGGTGAGTGTGTAGAGAGCATCATAAACATTCCTCGTCAGTGAGGTTTCACCGGCTTGACCCATAATAATCAGCTGCTCACCATCTCTGCCGGTGTCCTAAAATAGAAAT--
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17084   305990 349 +   375229 TGTATATGCaccaaatttttattatttatttaaaaatccaCGTGTTTCACTTTGAAATCTCAAAT-------CTGAATGCTTAATGTAGAAATTTTGCGTTGAAAACTTTATT--acttgtatttatttatttcactgtatt-ttgtttttaaataagtAAACCCG-----------------------AAAGTTGAAAGGAATGGAT---------------------------GGATGAACGAGCATTTAGAAATGTACAAAGAGAAATTAGGATCTATCTACAGCAAGTAGTTAGCGTCAGCGTGTAGAGTGAGTCATAAGTGCTCCGGACCAATGACGTTTCGCCTCCTTTTCCCATCACAATCAGTTGCTCCCCATTGTGACCGGTATCCTGAAATAGAATTGA
i caeJap4.Scaffold17084 C 0 I 954

a score=2883.000000
s ce10.chrX              4119759 30 + 17718866 TTGATGATTGATAAAA--ATAGTCAA-AAATAC
s cb4.chrX               9225444 26 + 21540570 --GGTCGTTGATA-AG----AGTTCACAAATGC
i cb4.chrX              C 0 I 250
s caeRem4.Crem_Contig0   1102558 26 -  4500979 --GTTCATTGATAGAT----AGTTCA-GACTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14834918 30 - 20921866 --TTTAACTGATAAAACTATAATTGA-GACTAC
i caeSp111.Scaffold630  C 0 I 292
s caePb3.Scfld02_0       2390833 26 +  4147112 --GATCATTGATAAAA----GGTCGA-AACAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   306339 954 +   375229 I

a score=1392.000000
s ce10.chrX              4119789 5 + 17718866 AACTA
s caeRem4.Crem_Contig0   1102584 5 -  4500979 AACTA
i caeRem4.Crem_Contig0  C 0 I 383
s caePb3.Scfld02_0       2390859 5 +  4147112 AACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   306339 954 +   375229 I
e cb4.chrX               9225470 250 + 21540570 I
e caeSp111.Scaffold630  14834948 292 - 20921866 I

a score=1199.000000
s ce10.chrX              4119794 83 + 17718866 TAACGTA---GTGCAAAACTCTTTAACAA---TTTGGTTTTCTTATCAGTCATATTTTGAAGT--GGATACCTGGTGCTACCTATTTCGTT
s caePb3.Scfld02_0       2390864 91 +  4147112 AAATATGATTGCGTGAAAGACTTCAACAAAACTACGGAACTGTTATCAGTCGTTGTTTATAGTCACAATGCCAAATGCTACCAATtctttt
i caePb3.Scfld02_0      C 0 I 214
e caeJap4.Scaffold17084   306339 954 +   375229 I
e cb4.chrX               9225470 250 + 21540570 I
e caeSp111.Scaffold630  14834948 292 - 20921866 I
e caeRem4.Crem_Contig0   1102589 383 -  4500979 I

a score=0.000000
s ce10.chrX              4119877 683 + 17718866  
e caePb3.Scfld02_0       2390955 214 +  4147112 I
e caeJap4.Scaffold17084   306339 954 +   375229 I
e cb4.chrX               9225470 250 + 21540570 I
e caeSp111.Scaffold630  14834948 292 - 20921866 I
e caeRem4.Crem_Contig0   1102589 383 -  4500979 I

a score=70.000000
s ce10.chrX              4120560 22 + 17718866 CTAAACTTCGAATCACAAGAAA
s caePb3.Scfld02_0       2391169 22 +  4147112 CTGACCTTTGATATAACAATAT
i caePb3.Scfld02_0      I 214 C 0
e caeJap4.Scaffold17084   306339 954 +   375229 I
e cb4.chrX               9225470 250 + 21540570 I
e caeSp111.Scaffold630  14834948 292 - 20921866 I
e caeRem4.Crem_Contig0   1102589 383 -  4500979 I

a score=500.000000
s ce10.chrX              4120582 114 + 17718866 AATACTAATCTTTCTACTCTCTTTTTCTAATTTTTTACGTCAAT---CTTATTTCAAAAAAATTCGAAAAGAAAGCCCACGATTTTTCAAAAT-----TTTTTTAAGCAGTGATTCACTTA---------------A
s caeSp111.Scaffold630  14835240 105 - 20921866 AATGCTAATCTCT-------Cttaatctcatttttc-----------gataactAATTGATATT---GAAGAAAGCCCACGAGttcatatattttcaatctttc------tgaatcattcaacaaagagaa-----g
i caeSp111.Scaffold630  I 292 C 0
s caePb3.Scfld02_0       2391191 107 +  4147112 AATGTTAATCTTTTAAAtc-ctttttgtcatttttccccTCGAAGCTCATAATT--TTATCATT---GTCAAAagcccat------------------tttttc------tgattcacttttcaaaaaaaagctatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   306339 954 +   375229 I
e cb4.chrX               9225470 250 + 21540570 I
e caeRem4.Crem_Contig0   1102589 383 -  4500979 I

a score=253.000000
s ce10.chrX              4120696 6 + 17718866 AACCCC
s cb4.chrX               9225720 6 + 21540570 AATCCT
i cb4.chrX              I 250 C 0
s caeSp111.Scaffold630  14835345 5 - 20921866 -aacag
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0       2391298 5 +  4147112 -AACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   307293 6 +   375229 AAACTC
i caeJap4.Scaffold17084 I 954 C 0
e caeRem4.Crem_Contig0   1102589 383 -  4500979 I

a score=79332.000000
s ce10.chrX              4120702 133 + 17718866 ACCTTCGGATTTACATCAGTCTGAACAGAAAGCTTGAGCTGATCCTCAGTGAATCCCTGCGGACAGGCTGAGCCCATTTTCAGCACACAGAGCCGTTCATCAGTCCATGCTGCAAA---------GAAAATGTCGCTTTTTT
s cb4.chrX               9225726 128 + 21540570 ACCCTTGGATTGACATCAGTCTGAACAGACAATCGAATCTGACTTTCCGTAAATCCACTCGGGCAAGATGAtcccattttcaaaacacaaaGCCTTTCGTCAGTCCAAGctataat------ttcgaaaa--------tctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1102972 131 -  4500979 ACCTCAGGGTTCACGTATGACTGGACCGATAGCCTCAGTTGATCTTCTTTAAATCCGCTCGGACAAGATGatcccattttcaaaacgcaAAGACGCTCGTCTGTCCAAGCTGTAAT-GATTATTC--AAA--------TCTT
i caeRem4.Crem_Contig0  I 383 C 0
s caeSp111.Scaffold630  14835351 126 - 20921866 ACCTTTGGATTAACATCCGTTTGAACAGATAGTTTAAGCTTGTCCTCTGTGAATCCGCTCGGACAAGATGATCCCATTTTGAGGACGCAAAGACGTTCTTCAGTCCAGGCTTAA--------ACGGAAAC--------ATCG
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0       2391303 128 +  4147112 ACCTTTGGATTCACATCTGTCTGAACAGAAAGTTTAAGTTTATCTTCTACAAATCCGCTCGGGCAAGATgatcccattttcaaaacgcAAAGTCTTTCGTCAGTCCAAGCTTAAAC------ACAGAAAA--------TCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   307299 125 +   375229 ACTTTCGGATTGACATCTGTCTGAACCGATAGTTTTATTTGATTCTCCTTAAATCCGCTTGGGCATGATGAGCCCATTTTAAGCACGCACAGTGATTCGTCAGTCCACGctacaattgttttttt-----------------
i caeJap4.Scaffold17084 C 0 I 1234

a score=-44868.000000
s ce10.chrX              4120835 414 + 17718866  
s cb4.chrX               9225854 484 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1103103 404 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14835477 429 - 20921866  
i caeSp111.Scaffold630  C 0 I 17
s caePb3.Scfld02_0       2391431 484 +  4147112  
i caePb3.Scfld02_0      C 0 I 74
e caeJap4.Scaffold17084   307424 1234 +   375229 I

a score=-6286.000000
s ce10.chrX              4121249 36 + 17718866 ---TCGA---AAACG--------TTCCAAAAATCATAT--------------------TGAGAAGCGTAT----------
s cb4.chrX               9226338 42 + 21540570 ACGTTGACCGGTCAA--------GAACAagtataaaat--------------------tcaaaaatagct----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1103507 41 -  4500979 --GTTGACGCAATAA--------AATGAATTATCATATG-------------------TCAAGAATGTAT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14835923 77 - 20921866 ---TCGACCGAATAGGGTGCTTTGATCTATGATAAAGTTgtttacttttcaaaatgcctcaaaaaagttttgatgttttt
i caeSp111.Scaffold630  I 17 C 0
e caePb3.Scfld02_0       2391915 74 +  4147112 I
e caeJap4.Scaffold17084   307424 1234 +   375229 I

a score=-46249.000000
s ce10.chrX              4121285 108 + 17718866 --------------------------------------------T-------------GTCCACACAAAACT----TGCA------------AT------AAGATTTCTCGATGCAGAAAATCAAA-TAAAAAG-------------------------------------TTACTGGCAAA--AATAAAAATCAAAAACCTAGTAGAACACTGTGCTTCTGAACTC---------------------
s cb4.chrX               9226380 196 + 21540570 gaaatgttttgaactGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAACGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGActcaatttggaaaaaaaaatta---------------ttga----------tttcaaAGAAC---------------GGctgtttaaa---ttcaaaaaaccaacttctgttttttt---------tc
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1103548 193 -  4500979 ------TTTTAGACTT-----------------TCAACCGCATTT-------------GACCGGTCAAG-------TGTAGttataaattgaat------aaatagTTTATATGCTTTGACCTA---TGGCAAAAATGGTTACGTTTGGATAACCGTTtgaattgcttttttttcggaCAATTCAGGGAGGATTGAAAACAGTAAACA---CTGAAAGAACAAACCACTACAAAATTGGAGTGAACTC
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold630  14836000 114 - 20921866 --------------------------------------------t-------------ttctgaacaaga------tgaatcattttgttttat------taCGGTATCGCGTTCAGTGACTCAAT-CAGTTAAATTCG-------------------------------------GTCAAC--ACGAAGAACAgattttgggaaaaa----tgaaCTAATGAACTC---------------------
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0       2391989 157 +  4147112 -------------------tgcccacagaaaaattgatgtttttt-------------cttcgaacaagg------tgaatcattttgtttcat------aGCTCT-----TTTCAGTGACTCAAT-CGATCAGTTTTGTGG-------------ATTTGA---Ggttttctgactgaaaat--acaaaaaaatgaaagaaaacaaaa--attgaactaatGAACTC---------------------
i caePb3.Scfld02_0      I 74 I 2
e caeJap4.Scaffold17084   307424 1234 +   375229 I

a score=-1203.000000
s ce10.chrX              4121393 9 + 17718866 GCAAGCTGT--
s cb4.chrX               9226578 6 + 21540570 -----ccatga
i cb4.chrX              I 2 I 1
s caeSp111.Scaffold630  14836116 9 - 20921866 GTCTGCTAT--
i caeSp111.Scaffold630  I 2 I 20
s caePb3.Scfld02_0       2392148 9 +  4147112 ATGTTTTAT--
i caePb3.Scfld02_0      I 2 I 14
e caeJap4.Scaffold17084   307424 1234 +   375229 I
e caeRem4.Crem_Contig0   1103741 42 -  4500979 I

a score=16879.000000
s ce10.chrX              4121402 143 + 17718866 CGAAAAAATTAAGAA---AAAAAGCTAGTC-AATTGTTTAATCAAACTCATGTTTGCCTTACGTACT-AATCATAAACACTGGGTTCTGTTA-ACCGATAC---TA-CCTGTTTCTGAATTAGTTTTGATTCGGGTGTTTGAAAAAACTTTC-A--------------------------------------
s cb4.chrX               9226585 152 + 21540570 aaaaaaattgaagagtaCATCAAGCTGGTATGATTATTTGATCAAACTCATATTTGCTCTTCGTACT-AA-----ATTCTTTACTTCCAACATACACATTT---CGTCCTGTTTTGTGTAGAG--------------TTTAACAATAAATTACTCGATTtataaaa-----------------aaactttca
i cb4.chrX              I 1 I 42
s caeRem4.Crem_Contig0   1103783 162 -  4500979 caaaaaaatgaagaa---aataatcTGGTCTTATTATTTAATCAAACTCATGTTTGTTCTTCGTACT-AA-CTTGAGTTTTAAGTTCTCTTGAACTCATTT---CA-CCTGTTTTTT--------------------CATtacaataattta-ttgaaatagaAGAGTTAGCACTgacactttgaaatttca
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold630  14836145 129 - 20921866 cagaaaaatgattgc---AGTAATCTGGTCTGATTATTTAATCAAACTCATGTTTGCTCTTCGTACTAAA-----GTTTCTCGGTTCTTCTAAACTCACTT---TG-TCTGttttaaaagaaat-------------caagaaaataattta-tg-------------------------------------
i caeSp111.Scaffold630  I 20 C 0
s caePb3.Scfld02_0       2392171 122 +  4147112 CAGGGA----GTAAG---AGTAATCTAGCTTGATTATTTAATCAAACTCGTGTTTGCTCTTCGTACT-AA-----GTTTTTAGGTTCTTTCAAACTCCGATTACTA-CTTGTTTTATAAAAac------------------gaaataattta-tt-------------------------------------
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17084   307424 1234 +   375229 I

a score=-4542.000000
s ce10.chrX              4121545 37 + 17718866 CAAAAAAACCGATT-----------TTTTAAGTTACATAGGTGGGGGT
s caeRem4.Crem_Contig0   1103945 18 -  4500979 tgtaaaaacagaacatga------------------------------
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  14836274 39 - 20921866 ---aagaaagaattacggcaataaaaaagagagttcatggga------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392293 36 +  4147112 ---gagaaggaaaaatggcaat---tttgaaatttcatggga------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   307424 1234 +   375229 I
e cb4.chrX               9226737 42 + 21540570 I

a score=13731.000000
s ce10.chrX              4121582 256 + 17718866 -----AGGCTGAAAACTGAAA-AACGT-----------------TTATTAAAAAAAGTTTACTAA-------------TTAAAAATGAGATGAGA-TAAAGACAAT-TAAA--------------TAAA--------AATAATTCTTAAGAATGAAAATT---------TGGTTTCTTTCGAAAATTGTTTCCCGTATTT-------AATAGATAAGAAAGGTGAA----GAATAAAATT---------GAACTGATTAAATGATTAAGGCACATGAATCA--TTTGT-TTGGTCG------GAAATGATGA--ATGA-----AATAAAAAATGAAATCAAACCAAAGTTCGGTATGataa
s cb4.chrX               9226779 255 + 21540570 -----aacatgaaaaatgagactAACT-----------------CTGAGGAATAAAGCTCA---------------------AAAATAACTGGTA-TGAAGAGAGG-TAACTATGGAGCTATCGCCAAA--------AGTTG--------AACAATGTTT---------GGT----TTCAAGAATTTGTTTCCCGCAATTTTAAAGAACAAGATAAG-GAGGTGAAGGTGAAAATAGGGTTAAAGTTTTGAACTGATTA-------AAGGCACATGAATCATTTCTGCGCTCGTCGGTGAGAGAAAGGATGATTTTGA-----------TAATGATGAGAGA---AAGGAT----------
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0   1103981 232 -  4500979 -----aacatatgaaaaGA---TAGCT-----------------TCGATT--TTAAGCTCAA----------------ATGGAAAGAAACtggca---aaaaaaat-gaataactgGAATATCACTAAAGAAGAAGGAGTCATTTAT-ATAACTAGGTTT---------TGG----TGTCAAAGTTTGTTTCCCGCAATT-------AAAAGataaa-aaggtga-----aaaagaaGGTTA-------GAACTGATAG-------AAGGCAAATGAATCATGTTTTC-CCAATCG------GAAATGATGA--GTGC-----------AAATGATgtga---------------------
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold630  14836313 250 - 20921866 -gaaaaacttgaaaatgga---CACCTGGACAAACACAAGAATTAAGAAGATATAAATACACTGTATATTGTAAGCTCAGAGAAAAGAACTGACACTGATGAGAAA-TAAT--------------TAAA--------A---G--------AACTAAAATT---------TGG----TTTCAAGATTTGTTTCCCGCAATT-------TGAAGATAAG-Aaggtgaa----gaaaaaaggttt-------gaaCTGATT--------AAGGCACATGAATCA--TTTGC-CTAGTCG------GAAATGATGA--AGAC-----------AAATGATTGGAGG---GAGTTTAG--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392329 251 +  4147112 taaaaaacataaaagagGA---CACCTGGACAAACACATGAA--AAGATAATATAAGCTCAcaa--------------agagatgaaaaatggta-taataaaaaattaat--------------taaa--------actcg--------aataaaatCTACATTTTGGTGG----TTTCAAGATTTGTTTCCCGCAATA-------AAAAGATAAGAAAGGTGAa----gacaaaagtttt-------gaactgatt--------AAGGCACATGAATCA--TCTGC-TCAATCG------GAAATGATGG--GAGcataatgacaaaaaatgattggaag-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   307424 1234 +   375229 I

a score=66467.000000
s ce10.chrX              4121838 107 + 17718866 aaaaaaata---aataaataGAGTATGTAAAATCAAATT------AAATTTGAGTGTGAACATCTGCTTTTTCAACGCTGTTTATGAAAAGTTCCGATTGGCCGATAATCTGTAAA
s cb4.chrX               9227034  89 + 21540570 --------------GATTTTGAG-------TGAAGGGTT------AGATTTGAGTGTGAACATCTGCTTTTTCCACATTGTTGATGAAGAGTTCCGAATGTCCGATTAtctgaaaa
i cb4.chrX              C 0 I 155
s caeRem4.Crem_Contig0   1104213  90 -  4500979 ---------------agtttgaaaat----agagaagtT------AAATTTGAGTGTGAACATCTGCTTTCTCGGCACTATTTATGAAGAGCTCCGATTGTCcaataatctgaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14836563 102 - 20921866 ----AATCA---ATAAAACAAAG-------AGTGAAGTTCTGATTAAATTTGAGTGTGAACATCTGCTTTTTCAACACTATTGATGAAGAGTTCCGATTGTCCGATTATCTGTAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392580  90 +  4147112 --------------aaaacagag-------aatgaagttc-----aaatttgaGTGTGAACATCTGCTTTTTCAACACTATTGATGAAGAGTTCTGATTGTCCGATTATCTgtaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   308658 105 +   375229 --AAAAATATACataaaacgaagaaaa---aaaagaatc------aaattTGAGTGTGAACATCTGCTTTTTCGACGCTGTTTATGAAGAGTTCCGATTGTCCGATAATCTGTAAA
i caeJap4.Scaffold17084 I 1234 C 0

a score=-2232.000000
s ce10.chrX              4121945 5 + 17718866 --ATATG
s caeRem4.Crem_Contig0   1104303 5 -  4500979 --ttatg
i caeRem4.Crem_Contig0  C 0 I 48
s caeSp111.Scaffold630  14836665 1 - 20921866 ------A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392670 1 +  4147112 ------a
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084   308763 7 +   375229 AGGAATG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9227123 155 + 21540570 I

a score=-820.000000
s ce10.chrX              4121950 12 + 17718866 TAGGGTTT-----AGTG
s caeSp111.Scaffold630  14836666  4 - 20921866 -------------AAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392675 17 +  4147112 tatttttttatgcAAGG
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084   308770 12 +   375229 TGTACTTC-----AGTG
i caeJap4.Scaffold17084 C 0 I 654
e cb4.chrX               9227123 155 + 21540570 I
e caeRem4.Crem_Contig0   1104308 48 -  4500979 I

a score=1811.000000
s ce10.chrX              4121962 113 + 17718866 GACGCTTGGTTAGGTACTCATGTTCTTTTTAGATTGCCAACATTTTTCACACCAAGTACATAGTTTAAAATTAAAAAATTACATATATACATTGGTTGCCATGTCTATTAAAA-----
s caeSp111.Scaffold630  14836670  64 - 20921866 AATGT--GGTTTTGTAAATATGTTCTTTAC---------GTCTTTTTCACACTTAGTACA-------------------------------------------GCtatcaaaactatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392692  59 +  4147112 AATGC--GGAAGAGTACTTATGTTCTTTTC---------ACATTCTTCACACCGGCcaca-------------------------------------------gctatcaaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   308782 654 +   375229 I
e cb4.chrX               9227123 155 + 21540570 I
e caeRem4.Crem_Contig0   1104308  48 -  4500979 I

a score=0.000000
s ce10.chrX              4122075 12 + 17718866 GTCGTCAGTGGG
e caePb3.Scfld02_0       2392751  0 +  4147112 C
e caeJap4.Scaffold17084   308782 654 +   375229 I
e cb4.chrX               9227123 155 + 21540570 I
e caeSp111.Scaffold630  14836734  0 - 20921866 C
e caeRem4.Crem_Contig0   1104308 48 -  4500979 I

a score=-9751.000000
s ce10.chrX              4122087 121 + 17718866 GAAAAAATAAAATACACTCCGGTGGTGCCAGAATTAAAAAAAAATTAT-----------AGCACTATCGCACGTTGGAATCTTTACATGAAAATTATTAACTAAACCATAAGTAATACATAAACAGAAAGGT----------------
s cb4.chrX               9227278 134 + 21540570 AACGAGATAA---ACAGCTTGAAAGTGCCAAGAATCTGAAAGCAAGatcaattctgaaaagttttgccCTTTGTCGGTTTCATGACATATATATCATT---TAGAACA--------ATATACACGAATAAGtggtcaactgcaaaaat
i cb4.chrX              I 155 C 0
s caeSp111.Scaffold630  14836734  18 - 20921866 -------------------------------------------------------------------------------ttataaCCTGT---------------------------TGTACGC------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2392751   0 +  4147112 C
e caeJap4.Scaffold17084   308782 654 +   375229 I
e caeRem4.Crem_Contig0   1104308  48 -  4500979 I

a score=-6060.000000
s ce10.chrX              4122208 44 + 17718866 AAAATTTTTTAGATTGACGACTTACAAAAAATGACAATAA--TTGA
s cb4.chrX               9227412 37 + 21540570 -gaaactctaCTTTTG------TTCAGGAGACATCGGTGT--TTCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14836752 14 - 20921866 --------------------------------GATGATTTTATTTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392751 11 +  4147112 ---------------------------------acagttt--ttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   308782 654 +   375229 I
e caeRem4.Crem_Contig0   1104308 48 -  4500979 I

a score=-32932.000000
s ce10.chrX              4122252 146 + 17718866 -TCAATTTTTTGAATTGAAATAAATCATTTTCAAAAACAGTTAAAAATA---------GTTTGTTTGCGATA--TTTGGGCATTTG-------AGCACGAAAGGTGT----------TTTTTAAAACAATTTTACA---TATGTTCAACTCTGTCAGTACAGTAATGCTCTTTTCACT
s cb4.chrX               9227449 132 + 21540570 -CTAGTCATTgg---------------------aaaacaatcaaaa-----------------tttgtaattATTATGAAGGTTTGACCGGTAAACGCCTAAAGTACGAAGTACCGGTTTACTAAACGATTGC------TACAGTCCCCGCCTTCA-TATTCTGTTATTTGTTTCCTT
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold630  14836766  32 - 20921866 -ATGGTTGTTGG--------------------------------------------------------------TGT-----TTTT-------TGCATTTAAAGCAC-----------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392762  33 +  4147112 -ccaatttttgg--------------------------------------------------------------TATGGCGGTTTC-----------TTTTCAGTGC-----------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   309436 144 +   375229 tccattttttgg--------------atttttctgagcaatataaaataaaaaattgggtaaatttaaaatt--taaaaatttttt-------atctaggaaaattc-----------tcaagaaacattttaaaaaataacgcTCTGCTCCCTAAAtgctgttgttgtttttttttt
i caeJap4.Scaffold17084 I 654 C 0
e caeRem4.Crem_Contig0   1104308  48 -  4500979 I

a score=157685.000000
s ce10.chrX              4122398 232 + 17718866 --------------TTACCTGATCAATATCAATTTGCGAATACATAACATCTTGCACGGGTGCCAAAAAACTGCCGGGGAAAGTTGTACCATCGTAATAGTCGTACTCAAGTTCATCACATTCGCTGAGTGAAGATTGTCCACGGGGTGGTACAGGTGACTCGTGGGATAGGCAAGCACGAGCCGTTCTGAAAAAAAAACATTAGGAGCAACATATTTGAATTTAAATGTTGAAATGCAAATGATA
s cb4.chrX               9227595 193 + 21540570 --------------ATACCTGATCAATATCAATTTGTGAATACATTACATCTTGCACTGGTGCCAAAAAACTGCCCGGAAAAGTTGTACCATCATAATAGTCATATTCAAGTTCATCACATTCACTAAGTGAAGATTGTCCACGTGGCGGAACTGGAGATTCATAAGAGAGACACGCGCGACCAGTCCTGCAAT---------------------------------------ATTTTAACTAATA
i cb4.chrX              I 14 I 9
s caeRem4.Crem_Contig0   1104356 184 -  4500979 --------------TCACCTGATCAATATCAATCTGCGAATACATAACGTCTTGCACTGGTGCCAAAAAACTGCCCGGAAATGTTGTACCATCATAATAATCATACTCGAGTTCATCACATTCACTTAGAGAAGATTGGCCACGTGGTGGAAGTGGAGATTCATGGGATAAACAGGCACGAGCAGTTCTG------------------------------------------------AAAGGATA
i caeRem4.Crem_Contig0  I 48 C 0
s caeSp111.Scaffold630  14836798 208 - 20921866 --------------TTACCTGGTCAATATCAATCTGTGAATACATGACGTCTTGTACTGGTGCCAAAAAACTGCCCGGAAATGTTGTACCATCATAATAATCATATTCATATTCATCGCATTCACTTAGTGACGATTGCCCGCGTGGCGGGATAGGTGATCCATGAGATAAACATGCTCTACCAGTCCTGAAATAAAGTC--------CAGTATAC----------------AAATACAACTGGGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392795 185 +  4147112 --------------TCACCTGGTCAATATCTATTTGAGAATACATGACGTCTTGCACTGGTGCCAAAAAACTGCCCGGAAATGTTGTTCCATCATAATAATCATACTCAAGTTCATCGCATTCACTGAGTGATGATTGTCCCCGTGGTGGTAAAGGAGATTCTTGGGATAAACAAGCTCGAGCTGTCctaaaat-----------------------------------------------tggga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   309580 204 +   375229 ttctcaaatcgTGCGTACCTGATCAATATCAATCTGCGAGTACATGATATCTTGCACCGGTGCCAAAAAGCTTCCAGGAAAAGTTGTACCGTCGTAATCATCATACTCAAGTTCACCAAACTCGCTGAGAGAAGATTGTCCACGTGGTGGAACAGGAGATTCGTGAGACAGGCATGCTCGGGCGGTTCTGAATTAAAAATTCGA------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-6385.000000
s ce10.chrX              4122630 20 + 17718866 AATCAATGGCAGTAGCGTTA
s caeRem4.Crem_Contig0   1104540  2 -  4500979 ------------Tg------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14837006 12 - 20921866 --------AGTGTAGCTTTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2392980  6 +  4147112 --------aaaata------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   309784  4 +   375229 ----------------GTTG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9227788  9 + 21540570 I

a score=-2047.000000
s ce10.chrX              4122650 36 + 17718866 TGCAAAAAAAAGCTTGAATAGAATGAAAATTTACAA
s caeRem4.Crem_Contig0   1104542 14 -  4500979 tgt----------------------aaaaatgagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2392986 10 +  4147112 --------------------------aagtttatag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   309788 28 +   375229 --------TGAGCACGCACAAAATAAAACTTTGCAA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9227788  9 + 21540570 I
e caeSp111.Scaffold630  14837018  0 - 20921866 C

a score=-4804.000000
s ce10.chrX              4122686 73 + 17718866 AAAAAAACCGCAGTAAAAGGGTAAATGTTTTGTCAGACTGGCAAAAAGTTGTCTAGTTGTCAACGGTAGAGAG
s caeRem4.Crem_Contig0   1104556  7 -  4500979 aacattG------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2392996 10 +  4147112 aaaataaaTG---------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   309816  0 +   375229 C
e cb4.chrX               9227788  9 + 21540570 I
e caeSp111.Scaffold630  14837018  0 - 20921866 C

a score=-7334.000000
s ce10.chrX              4122759 64 + 17718866 TCTACTTCAAACAAAAATTTTTGTTGTTTTGAAAAAGTTATCTAGTAGTTATTATGAAAAAAAT
s cb4.chrX               9227797 10 + 21540570 ------TCAA-------------------------------------------ATTCAA-----
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1104563  3 -  4500979 -----------------------------------------------------ATT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2393006  6 +  4147112 -----------------------------------------------------ATGGAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   309816  0 +   375229 C
e caeSp111.Scaffold630  14837018  0 - 20921866 C

a score=-1686.000000
s ce10.chrX              4122823 10 + 17718866 CTTCCACAAA
s cb4.chrX               9227807  8 + 21540570 --TCCTCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1104566  5 -  4500979 -----TCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2393012  5 +  4147112 -----ACATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   309816  4 +   375229 ------CTTA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14837018  0 - 20921866 C

a score=101831.000000
s ce10.chrX              4122833 135 + 17718866 CCTTGGTGTACTTTGTACACTCAACTGAATCCCAATGCTCCGCTTCGCTACATAATTTCTTGAGCTTACATGTGTGCTCTCCGTGTTGCCACTTCTAATCATTTCCGAATCATATCTG--AAGC-------ATCTTTATTCAAG
s cb4.chrX               9227815 138 + 21540570 CCTCGGAGTGCTCTGAACGCTCAATTGTATACCAATGCTTCGTTTAGCTACGTAATTTCTAGAGCTAACATGTGTACTCTCTGTGTTACCACTACGAATCATCTCGGAGTCATACCTAAGAaatga-----attttaatttca-
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1104571 135 -  4500979 CCTAGGAGTGCTCTGAACACTGAGTTGAATTCCAATGCTACGTTTGGCGACATAGTTTCTTGAACTGACATGAGTACTCTCTGTGTTCCCACTGCGAATCATTTCGGAATCATATCTA--AAATG------ACTTGAATTTAG-
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold630  14837018 134 - 20921866 CCTTGGAGTACTCTGGACACTCAATTGGATACCAATACTTCGTTTTGCAACATAATTCCTTGAACTAATATGAGTGCTTTCGGTGTTCCCGCTACGAATCATCTCAGAATCATATCTG--AAA--------AGTTGCTTATGAG
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0       2393017 134 +  4147112 CCTTGGGGTGCTCTGAACGCTCAACTGTATTCCAATACTTCTCTTTGCCACATAATTTCGTGAGCTGATATGTGTACTCTCTGTGTTGCCGCTACGGATCATCTCGGAATCATACCTG--TGA--------ATTCTTTCATGAA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084   309820 141 +   375229 CCTTGGAGTGCTCTGAACACTAAGCTGAATTCCAATACTTCTCTTGGCGACATAATTTCGCGAGCTCACATGAGTGCTTTCCGTGTTTCCACTTCTAATCATTTCAGAGTCATATCTA--AAAATACCAAGGTTTTTGGTTGA-
i caeJap4.Scaffold17084 C 0 C 0

a score=-5941.000000
s ce10.chrX              4122968 23 + 17718866 TTTG----CAAATTTAAGAAGAAGTAC
s cb4.chrX               9227956 16 + 21540570 tttagtgGTTAATTTC-----------
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold630  14837159 15 - 20921866 TACA----TCCATATAG--------CC
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0       2393160 14 +  4147112 TTTA----CTTATTTTA---------C
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084   309961 22 +   375229 -TTG----ACAATTTAAAAACGTTAAC
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1104706 23 -  4500979 I

a score=277534.000000
s ce10.chrX              4122991 726 + 17718866  
s cb4.chrX               9227972 716 + 21540570  
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1104729 738 -  4500979  
i caeRem4.Crem_Contig0  I 23 I 30
s caeSp111.Scaffold630  14837174 692 - 20921866  
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_0       2393174 792 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084   309983 736 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-5071.000000
s ce10.chrX              4123717 22 + 17718866 ACTCGTTTATACACTTTTCATT
s cb4.chrX               9228696 21 + 21540570 AAAAATGAT-GGAttacgaaat
i cb4.chrX              I 8 I 4
s caeSp111.Scaffold630  14837874 22 - 20921866 ATTAGTAATAAGAGTACTAAAT
i caeSp111.Scaffold630  I 8 I 5
s caePb3.Scfld02_0       2393971 22 +  4147112 CCTAATTTTCACTTTACGAATT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084   310719 13 +   375229 -------ACCACATTTTGAT--
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1105467 30 -  4500979 I

a score=1110789.000000
s ce10.chrX              4123739 2488 + 17718866  
s cb4.chrX               9228721 2341 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1105497 2392 -  4500979  
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  14837901 2419 - 20921866  
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0       2393993 2359 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   310732 2415 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-25071.000000
s ce10.chrX              4126227 108 + 17718866 TAGTTTTCCATGACTCTTGCGTAAGGCACCAAACAAACTAAGCAAGATTTT---------TTGCCAGAGTAGTTTTTTCAAACAAACGGAAATTAACGGTACACACAACTTGATTGT--
s cb4.chrX               9231062 101 + 21540570 TAGGTTTCAA--ACT--------------AGAATAAGAAATTTAGGGTTTTCaataattatgaacaaattctgaaatttaaaaaattgcaaaatataattaaaaatgttttgaaggt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1107889  26 -  4500979 ----------------------------------------TTTAGGcgctc--------------------------------aatttcaaaatgcgA---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840320  24 - 20921866 ----------------------------------------ACTAAGAGTTC------------------------------ATAGTTTGAGTGT-------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396352  44 +  4147112 ---------------------------------------------GAATTT------------------------------TTAGGTTGAGAATGAATGCAATCTTCCCCGCAATGCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   313147   0 +   375229 C

a score=-6080.000000
s ce10.chrX              4126335 42 + 17718866 TTTTTTTTGAA------------------------------------TTTTATAACAATATTATCAAAAAC---------------------CGCCAAT
s cb4.chrX               9231163 99 + 21540570 ttttttttctaaggttttttgtagtctgaaatgtATCCATCGGCCTGTACGATGCTAAAATGTCCcgaaacccaaaatttcccTCAGTGGCTTCCCCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1107915 10 -  4500979 -------------------------------------------------------------GTTTCTAAAC----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2396396  0 +  4147112 C
e caeJap4.Scaffold17084   313147  0 +   375229 C
e caeSp111.Scaffold630  14840344  0 - 20921866 C

a score=-14771.000000
s ce10.chrX              4126377 63 + 17718866 --------TCTTTTAATTCATGTAAAGTGAAGAATTCGTGTTCCCGCTTTCCTCACTA------CCAACGCTTCCAC
s cb4.chrX               9231262 54 + 21540570 --------TCTAGAGACTCTTTC---------AACTTCTATCCACAAATTTCTAATTA------ATAACGTTCTGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1107925 23 -  4500979 ------------GCGACTC------------------------------TTCTAATTA------ATAACGT------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2396396 18 +  4147112 -------------------------------------------------TTCTACTTAGATTTTGTA----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313147 32 +   375229 TCTATTAATTTAGAGATTCCA----------------------------TCTGCACTA------GC-----------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14840344  0 - 20921866 C

a score=139698.000000
s ce10.chrX              4126440 200 + 17718866 TTCATTAATAACGTTT----CAATGCAG-------GAATAGCTCATCTGTTAAATCTT--GCATATTTC-CAGGAAATGATGTGCTGCAATCGGTCACACAACCCCCCACCAT----CTTCGTAACAAT-AGAAATGGCGTCTAAGTTACTGCGCACTAGGGACCAGTTTAATTGAAGC-GAACATTTTCAATCA-TGAAACCAAAACCAATTACGTCGCC
s cb4.chrX               9231316 201 + 21540570 TTCACACACAAATTCT----CACAG-AT-------GAGCATCTCATCTGTTAAATCTT--ACGcatttcacaggaaatgacgTGTTGCAATCGGTCACTCATTCCCTCTCTCCCCGACTGCGTAACAATAAGAATTGCCCTAAGAGTTACGGCGCACAAGGGACCACTTTAATTGAACCGGAACATTTTCAATCATTGAAAACGAAACCAATTAC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1107948 192 -  4500979 TTCAGTTGCGCCGTTT----CTGAG-AC-------GAGCAGCTCATCTGTTAAATCTT--ACGCATTT--CAGGAAATGATGTGTTGCAATCGGTCACTCATTTCTC----------CTGCGCAACAAT-GGAATTGGCTTCTGAGTTACTGCACACAAGGGACCACTTTAATTGAAAC-GAACATTTTCAATCA-CGAAAACGAAACCAATTACGTCTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840344 203 - 20921866 CTAATTAATAACGTTCGTCGCAGTT-TC-------TAGAAACTCATCTGTTAAATCTT--ACGCATTT--CAGGAAATGATGTGCTGCTATCGGTCACTCATTCCCTCTCATCT---TTGCGTAACAAT-AGACATGGCCTCTAAGTTACAACGCACTAGGGACCACTTTAATTGAAAc-gaacattttcaatca-tGAAAACGAAACCAATTACGTTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396414 203 +  4147112 ---ATTAATGACGTTC----CAGTG-ACACAACCAAAGAAACTCATCTGTTAAATCTTACACGCGGTT--CAGGAAATGATGTGTTGCAATCGGTCACTCATCCCCCATTTTCT---TTGC--AACAAT-AGACATGGCCTCTAAGTTACTGCGCACTAGGGACCACTTTAATTGAACG-GAACATTTTCAATCA-TGAAAACGAAACCAATTACACTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313179 168 +   375229 TTCATTAATAA---------------CT-------GCGAAGCTCATCTGTTAAATCTT--GCACATTT--CAGGAAATGATGTGTTGCAATCGGTCACTCATT--------------CCACTCAACAAT-AGA----------AAGATACTACGCACTAGGGACCACTTTAACTAGGGC-GAACATTTTCAATCA-TGAAAGCGAAACCAATTACGCCACC
i caeJap4.Scaffold17084 C 0 I 29

a score=-5501.000000
s ce10.chrX              4126640 25 + 17718866 TCT-------TCAAAATGATGAAACA-CAACGA
s cb4.chrX               9231517 14 + 21540570 ----------------TAGTCACACA-G--ACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1108140 30 -  4500979 TCATTTTAGGATGAAATGATGAAACA-C--CTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840547 31 - 20921866 CACGAGAAGGTTAGAATGATGAAATAGC--TGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396617 24 +  4147112 CTC-AGAAGGT-----TGATGAAATA-C--CAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   313347 29 +   375229 I

a score=179456.000000
s ce10.chrX              4126665 269 + 17718866 CGA-CGTACCAATATATACAGCTCCATCGTCATGGTTTTTCGCGCCTTCTGGAACTGCTAATATACGGAGCCGGTAGTGTAGATGCTCCATGGAGCACTCCGCCAAACTCCAGCCAACTGTGTAATCGGAACTGCAATGCGGGAAAATACTGTCCTCTCGTAGTCGTAGGGCATTTTGATTTGTTCGATTCACAACTATCCATTTGTCAGCCTGCAA-GTAAAATATAAAAATGTACTCCCAATATCCATTTTTCAGTCTTTAATA-----GGGTG
s cb4.chrX               9231531 249 + 21540570 CTAGCATACCGATATAAACTGCTCCATCGTCGTGATTTTTTGCTCCTTCGGGAACTGCTAGAATTCGAAGCCGGTAGTGTAAATGGTCCATTGAGCATTCAGAAAGATCCCAGCCAATTTTATAATCAGAACTGCAGTGTGGAAAAATGCTGTCTTCCCGAAGTCGAAGAGCATTTTGAGTTGTTTGATTCACCACAATCCATTTGTCGGCCTAAAAAG--------------------------TCCATATTTCATTTTAGAATGAGGTTCTGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1108170 269 -  4500979 CTA-CATACCGATATATACTGCTCCATCATCATGATTTTTTGCTCCTTCAGGTACCGCCAGAATTCGGAGCCGATAGTGTAAATGATCCATCGAGCATTCAGCTAAGTTCCAACCAATTGTGTAATCTGATTGACAATGTGGGAAAATACTATCTTCACGTAATCTCAAAGCATTTTGATTCGTTCGATTTACCACTATCCATTTGTCAGCCTGTAATATG---TTGtgtgattcatttttc---ttcataattcacttttcaatttggTGTAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840578 268 - 20921866 CTA-CATACCGATATAAACTGCCCCATCGTCGTGATTTTTCGCCCCTTCTGGAACTGCTAGAATCCGTAGTCGATAGTGTAAATGATCCATAGAACATTCAGCTAAATTCCAACCGATCGTGTAGTCAGAACTACAATGCGGAAAAATGCTATCTTCACGTAACCTGAGTGCATTCTGGTTTGTTCGATTCACGACAATCCATTTGTCAGCCTGAAATGAAGATACCGATAATATATTCTTCTTGtctatttctcatttctcaata-------GGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396641 262 +  4147112 CCA-CATACCAATGTACACTGCACCATCATCGTGATTTTTTGCACCTTCTGGGACAGCGAGTACTCTGAGTCGATAATGTAAATGATCCAAAGAACATTCTGCTAAATTCCATCCAATTGTGTATTCTGAACTACAATGCGGGAAAATACTGTCTTCGCGTAACCTCAACGAATTTTGACTTGTTTTGTTGACCACAATCCATTTATCAGCCTGTAAAAGCAATCAGGAAAATtaac--------tccatttttcattccctAATG-----CTGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313376 251 +   375229 CCA-CGTACCAATGTATACCGCTCCATCGTCATGATTTTTGGCACCTTCTGGAACTGCAAGGATTCTGAGACGATAGTGAAGATGGTCCATTGAACATTGGGCCAAATCCCAGCCAATTGTGAAATCTGAACTGCAGTGCGGGAATATACTGTCTTCACGTAATCGGAGCACATTTTGAGTCGTTCTATTCACCACAATCCATTTTTCACCCTGTAA------------TAAACCATT-------CTCGttcgtcatttttcaaaagaatg-----
i caeJap4.Scaffold17084 I 29 I 38

a score=-7103.000000
s ce10.chrX              4126934 43 + 17718866 TAGATATGTTAGCTCTCTCCCTTTTCCATCAAGCTAAGCCGGA
s cb4.chrX               9231780 28 + 21540570 -AGATATG------CGTTCCCTTT--------GCTTTTCCCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1108439 26 -  4500979 TGGACAtg------ctttttct-----------cttctcacta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840846 29 - 20921866 ACAACAT--------------TTTAGGGGAAAGCTTCCCTCCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396903 25 +  4147112 TGGACAT--------------T----AAGAAAGCCCTCCCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   313627 38 +   375229 I

a score=49774.000000
s ce10.chrX              4126977 204 + 17718866 TCCCGAA--TCTCATAAAACTTGATATTTATTAATGCTCGTTCCGTT----TAACGGGA---TATGGGGTCATGGAAACGACTGGTTGCATGCTCAAAGTGCTTTTAG-------------CCTATT----------TTTTCTGTGGTTTTTTCTCAA----------------TCTAGTAAATGAAATTGTATAGGGAAATGAAAATGAGAAAA------TACTTTTA--CCACGAAACTTTTTTCATTAAGCAAAAG--C
s cb4.chrX               9231808 176 + 21540570 TCGTTAG--CCTCATAAAACTTGATATTTATTATTGCTCATTTCTTTCTTCTAACGAGT---TTTGGGGTCATGGTGACAG---------------AAGTGTCCGCTG-------------------------------TCCA--GGTCCTTTTTCAA----------------TctagagaatgaaaaaatggcGGGAAGTGG----GAGAGGA-----TAACAcgca------aaaacttttttcattagGCAAAAA--C
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   1108465 186 -  4500979 CGCCGGA--TCTCATAAAACTTGATATTTATTATTGCTCGTTTCTTT----TAATGGTT---TATGGGGTCATGGTGACGGGTGGTTGGTCTCAGAGAGTGCTTGGTGAAA------CAACCCTTTT----------TCTCCGATAGTTTTTCTTTAA----------------TCTAGAGA---------------------------AAAGgg-----caattttca-tttctccaacttttttcattagGCAAAAA--C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14840875 174 - 20921866 AACCGGAACACTCATAAAACTTGATATTTATTATTGCTCATTTCTTT----CGACGGGT---TATGGGGTCATGGTGACAG-----CAG----GCAAAGTGCTTTCTT------------------T----------GCCTCAGATATATGCCTCcaa----------------tcaagaaaatg------------------------aaaaaacgtgTCGATTCC----TTcccaaacttttttcattaggcaaaaaacc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2396928 197 +  4147112 TGCCGGG--TCTCATAAAAGTTGATATTTATTATTGCTCATTTCTTT----TAACGAGT---TATGGGGTCATGGTGACGGGTGGCCAGGCTTGCAAAGTGCTTTCTT------------------TGTGAAGCACGGCTGCTGAATTTTCCCTTCAa----------------tctagaaaatgagaaaa------------------agaaaaagcatcgatttcca--ttcttcaaactttttcattagGCAAAAA--C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313665 223 +   375229 TGCCGAA--TCCTATAAAACTTGATATTTATTATTGCTCGTTTCTTT----TAATGGGAGTGTTCAGGACGAAGAAAAACGATGGATAGA---AGAAAGTGCCTAGTGAACACCGTTTTATCTTGTTGTACTAgtcattttcttcattttctttccAACATCGTTGTTCAATCTTTCCGACAACAAA----------------------AAAGGG------CATTAGCAAATACCTCAAACTTTTTCATTAGCCAAAAA--C
i caeJap4.Scaffold17084 I 38 C 0

a score=-1886.000000
s ce10.chrX              4127181 36 + 17718866 ATTGCTCTTTTCTTTTTTTTCTGCCTTC------------------TCTGAAAG
s caeRem4.Crem_Contig0   1108651 39 -  4500979 --CAC---ATACACGTTTTTCTGCGCCT----------AAAGTGGTACTGGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14841049 42 - 20921866 ccaaa---atGCTTGTGTTTCC---------GTAGAGAAAAGTGGTAGTGGAAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2397125 54 +  4147112 CCAACTCTACACCCGTTTTTCTTCGCCCCCAACGAGAAAAAGTGGTACTGGAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313888 24 +   375229 --------------------CTACGCAC----------TCGGTGGTACTGAAAG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9231984 30 + 21540570 I

a score=116899.000000
s ce10.chrX              4127217 331 + 17718866 GCACGCTTC-TCGAATTCTGCTCCAATATGCTAAACTCTCTAGGGAATGAAGCTTTG----CCTATCAATCC-ATGCCCATTAAAGGTGATGAAAATTTAGGC---------------------------TTATTTTGTGGCAGAT------------------------------GCCTTTTTTGCA---------------ACCAAC------CCCTT--------CTTTTATTTATTGAGGGCCAAAAAA---ATGG--AAAAAGGAAATGAGCTGTGTGGCACCGAAGACATGTGTAAAAAAGAGAAGAAGCTG-TGCGGAAGTACCATATAAT---CAGGCGCCGAGATAGATTTCCTCTTTCTTGTTTTCTGCTACGTATAGGACG--------GGGTT-----ATATTAACAAAAGCATACATA-TGATATTT--------GC-TATA
s cb4.chrX               9232014 303 + 21540570 GCACGCTTC-TCGAACTC----------TA------TCTCGAGGGAATTCCATTGTAAGCTTCTATCAATTTGGGTCCCATTAAAGGTGATGAAAATTTAggc-------------ttttctcttttttttttgtctgtgaCCCA--------------------------------------------------------------------GGCCCTT--------GTTGTATTTATTGGAGG-----------GGCA--GCAGAGGAAATGAGCTGTGGTGGGATGTGGACATGTGT-------AGAAAATGCTG-TGCGGAAGTACCATATAATCAACAAGGAGCAagatttt--------ttcttgttgtcGCCTACA--CATGATC----------GCTG----TGTAGAACAATAGAATATGGAATCATCTTTCTG-TACGACGGATA
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   1108690 358 -  4500979 GCACGCTTC-TCGAACTCTCGAACCCAATG------TCTCCGGGGAATTACGTCTTG----CCTATCAATTCGGCTTCCATTAAAGGTGATGGAAATTTAGCC--CACCACTTGAGtattcttctctctctttttttgtgacCCAC------------------------------CCATTCTGTCcac--------------acacacacaTCGCCACT--------CTTTCATTTATTGGGGgtagaaaaaaatggga--agagagGAAATGAGCTG---------GTAGACATGTAT-------AGAAaaagctg-tgcggaagtaccATATAAT---CAAGACGCGAGATTTTTCCCC--CTTCTTGTTTTCGACTACATTCATGATCGTGTATGGGGGCAG----AGCATAACAAAAGAATATACAATCATCCTTTCG-TACAAC---TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14841091 359 - 20921866 GCACGCTTCTTCGAACTCT-GCCTCAAATG------TCTCGAGGGAATTCAGCTTTG----CCTATCAATTC-ACCCCCATTAAAGGTGATGAAAATTTAGGC---------------ttctttccctcttttttttgtgtccAAT------------------------------ACCCTCTGACCAC--------------ACAAACGCATCGccactttc-----tttttatttattgggggtaaaaaaa---tggaagagaaaggaaatgagCTCTGTGGCGCGGTGGACATGTGT-------AGAAAAAGCTG-TGCGGAAGTACTATATAATTAAAAGCTCCCGAgattcttttcc-atttcttgttttcgaCTACATCTGTGATC--GTGTGGGGGCAGAGAAGGAATAACAAAAGAATAAAGAGTCATCTAT--G-TACAAC---TA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2397179 361 +  4147112 GCACGCTTC-TCGAACTCTAGCCCCAATTG------TCTCTTGGGAATTCAG----------CTATCAATTC-ACCCCCATTAAAGGTGATGAAAATTTAGGC--------------------TCCCTCGtttttttA---CCCAT------------------------------TCTAGCTATCCACACATGCCAAGAGAAACAAACCCATCGccactctct----tttttatttatagggggtaaaaaaa---tgga--agaaaggaaatgagCTCTGTGGCGCAGTGGACATGTGT-------AGAAAAAGCTGTTGCGGAAGTACCATATAATC--AAGTTCcctagatttttttcc-atttcttgttttcgcCTACATTCATGATC--GTGTGTGGGCTGCGGAAGTATAacaaaagaatatgaaatcaTCTTTCCG-TACAAC-TATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   313912 380 +   375229 GCACGCTTC-TCGAACTAT------GCACG------TCTCAAgggaatttcatttt-----tctatcAATGC-GGGCCCATTAAAGGTGATGAAAATTTAGCCGGCGCTGGCTCCCTTCTCTTTCTTTACTCATTTTTTCAACCACCACAACATACACGATGTGCTTGCTCCCTCGGTCTTCTCTTCA---------------CCCTACCCTTCCCTTCCCTCCCTAGCCGTTATTTATTGTGGTGGAGAAAA---AGCG--AGAAAGGAAATGAACTGAGGCGCGGTATAGACATGTGTGCATGTGTGTAGAAGCCG-TGCGGAAGTACCATATAAT---CAA--CGCGAAATTTT-------TGTCTTGTTTTCAAATA-ATGCATGATC--------GCGTA-----GTCACAACAAAAGAATACAGAATCATCATTCCGATA---------
i caeJap4.Scaffold17084 C 0 I 20

a score=-3397.000000
s ce10.chrX              4127548 36 + 17718866 TAGATGTT------ACATGTCATGTCTCACGAAAGAATTCGT
s cb4.chrX               9232317 15 + 21540570 CGGATG--------ACATAAA-------------------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1109048 23 -  4500979 TAGATGTCAAACCAACACGAA-------------------AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14841450 15 - 20921866 TAGACG--------ACATGTT-------------------AC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2397540 26 +  4147112 TAGAC---------ACATGTCGAGTATGGCAGA-------AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   314292 20 +   375229 I

a score=321757.000000
s ce10.chrX              4127584 476 + 17718866  
s cb4.chrX               9232332 495 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1109071 506 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold630  14841465 515 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2397566 513 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   314312 535 +   375229  
i caeJap4.Scaffold17084 I 20 C 0

a score=-9330.000000
s ce10.chrX              4128060 33 + 17718866 TACAAATTTTATTTGAAAAAACTTAAAGTGA--AG
s cb4.chrX               9232828 19 + 21540570 cacatat--------------tttaaaataa--at
i cb4.chrX              I 1 I 15
s caeSp111.Scaffold630  14841980 12 - 20921866 ---------------------tttcatcttg--AT
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0       2398079 14 +  4147112 ---------------------AACAAGATTGTCAT
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17084   314847 17 +   375229 -------------GAAAGTTATTTACAACA-----
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1109577 36 -  4500979 I

a score=237194.000000
s ce10.chrX              4128093 280 + 17718866 TTACCAGTTTTCCATTTTCCTCTAACCGATAATCATTCGAAACTTGCAGAAAACATTCGCAAGGTATCACAGCTGTTTTGAACAGGCAACTTGAGATATTCGAAGCGTAGATAGTGAATTGACTAGTGACGTCTGATGTCTCCACGTATGCTTGAGAGTTGGCATGTGGAGTTGACGGATTCAGTAGCGATTTTATGATTGGGATTGAATCAATTGGTAGCAATAGTAATAGGAAAAGGAATAAGGGGAATAATTTTAAAGCCAATGACATCT--GCtatat
s cb4.chrX               9232862 280 + 21540570 ctACCATTCTCCCATTTTCCTCTAACCGATAGTCATTGGAAACTTGAAGAAAACATTCGCAAGGTATCACAGCTGTTTTGAACCGACAACTCGAGATATTCGATGCGAAAATTGTAAACTGGCTAGTGACGTTTGATGTCTCAACATAGGCTTGCGAGTTTGCATGTGGATTCTTAGGATTTATAAGTGACGGTATGAGTGGGAGTGGGCGGGTTAATTGTAGCAgtaatagaaaaagaaataaaggAAAGGTTTGGAAAACGACACGCATCT--GTTGTTT
i cb4.chrX              I 15 I 32
s caeRem4.Crem_Contig0   1109613 274 -  4500979 TTactagttttccattttcttctaaCCGATAGTCAtttgaaacttgaagaaaacatTCGCAAGGTATCACAGCTGTTTTGAACCGACAACTTGAGATATTCGATGCGTATATCGTGAACTGACTAGTGACGTTGGATGTTTCCACATATGCTTGAGAGTTTGCATGTGGAGTGGATGGTTTAATGAGAGATGGTAGTAAAGGAAGAGGTTCAATTGGGTGT---agtaaaagaaataaaaatatgggAAAGGTTTTGAAAACGACAGGCATct--gttg---
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  14842001 282 - 20921866 TTACCAATCTCCCATTTTCCTCTAACCGATAGTCattggaaatttgaagaaaacactCGCAAGGTATCACAGCTGTTTTGAACCGACAACTTGAGATATTCGATGCGTATATTGTGAACTGACTAGTGACGTTTGATGTTTCCACATAAGCTTGAGAGTTTGCATGTGGAGTAGATGGTTTCAGAATAGATGGTGATAATGGAACAGATTTTGTTCTATGTGACAGtaacagaaataaaaataaagggaatattttgaaaacaattgacaTTTTCGATTTAA
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0       2398105 277 +  4147112 TTACCAGCCTCCCATTTTCTTCTAACCGATAGTCATCAGAAACTTGAAGAAAGCACTCGCAAGGTATCACAGCTGTTTTGAACCGACAACTTGAGATATTCGATGCGTATATTGTAAACTGACTAGTGACGTTTGATGTTTCCACATATGCTAGAGAGTTTGCATGTGGAGTGGATGGTTTTACAAGTGATGGTAACAATGGAATGGATTCACTTGTATGT---AGtaatagaaataaaaatagggGGAAGATTGTGAAAACAGCAGACATCT--GTCTTAT
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17084   314864 264 +   375229 -TaccaattttccattttcctcTAACCGATAGTCATTGGAAACTTGTAGAAAACACTCGCAAGGTATCACAGCTGTTTTGAAACGACAGCTCGAGATGTTCGATGCGTAAATTGTATACTGACTGGTGACGTTGGATGTCTCCACGTATGCTTGTGAATTTGCATGTGGAACGGGTGGATTCAAAAGAGATGGTACTAGGGGAAGAGATTCAGATGTGTGA---AGTAACAGGAATAAAGACAAAAAAG------TGGGGAGTTCGGGCATCT--G------
i caeJap4.Scaffold17084 C 0 C 0

a score=-6862.000000
s ce10.chrX              4128373 22 + 17718866 ----attaat--ttttttttatttCGAA
s caeRem4.Crem_Contig0   1109887 16 -  4500979 ------------tttttctgaattcaat
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  14842283  8 - 20921866 ----GATAA---GTT-------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2398382 11 +  4147112 ----GTtaatgtttt-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   315128 15 +   375229 GTTGTTCAGTGTTTC-------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9233142 32 + 21540570 I

a score=91434.000000
s ce10.chrX              4128395 292 + 17718866 AGTTTCATCGCAATAGG--------------AGAGCAATCTGAAA-----AGAAATTATATCAAGACGAAAAAGAAAGAAATCATAGCAAGAAATG----------AGAGAGAAATTGGTTTGGTTTT-----------------ACGAG---------AGGTGTCGCCAGTGTCGGCAACACTAATCTGCACTTGGTAACT-ACACGACGACGATGCGGGGACCCC--------AGGTCTCTGTGCCTGG----ATCGGATTACGTGAAGC---CG----------------GGGGGAACG---------CTTTGAACGGGA----AACGTGTATCAATTACACG------GAGAAGGTTTGTCGAAAGACGAGAAAATAATGCAAATATTGGGAGA--
s cb4.chrX               9233174 280 + 21540570 ATTTTCATCGTATTC----------------GAAGATatctggaaaacaaagaaaatttttaaaaaagagagaaa---gagttggacgaagaaaa--CTGAGAGT-TGAGTGGAATTGCTTTT--------------------------G---------AG---------GTGTCGGCAACACTAATCTGCACTTGGTAACT-ACACGACGA------CGGGACCCCGTTGGAGGGAGC-------ACTGGACATATCGGATTACGGGAGGC----AAGAAGAAGCGGGAGATGGGGGAACACCGCGACTTCTCTGAACGGAATGACAACACGTATCAATTACACGA--GTTGTGGTGACTTT--------------------------------GAA--
i cb4.chrX              I 32 I 5
s caeRem4.Crem_Contig0   1109908 300 -  4500979 CTTCGCATCGCTTTCGGG---------AAAggggaaaatctgaaa---taagagAGTTTAAGATAGAAGGAGTAAACGGAATTAGAAGAAGGCGAGTCAGAGAGA-AGGAAGAAATTGGTTTGGTTTC-----------------ACGAG---------AG---------GTGTCGGCAACACTAATCTGCACTTGGTAACT-ACACGACGACG----CGGGACCCC--CGAAGCAGGTCTCTGTGACTAGACATATCGGATTACGAGAAGC----G----------------GAGGGAACGCTG------CTTTGAACGGAATGAAAACACGTATCAATTACACGATTGTCAAGAAGGttcttccaa-----------------aaatatatggaaa--
i caeRem4.Crem_Contig0  I 5 I 5
s caeSp111.Scaffold630  14842291 285 - 20921866 --CTTCATCTCATTCGAg---------gaattca-gaatctgaaa---aatgaaagtttaaG---AAATCCGAGTATTGAGCAAGAACAAGAGACGAT--AGAGTGAGTAAGAAATAAGTTTGGCTTC-----------------ACAAG---------AG---------GTGTCGGCAACACTAATCTGCACTTGGTAACT-ACACAACGACG----CGGGACCCC---GTAGCAGGTTTCTGTGACTGGACATATCGCATTACGAGAAGC----G----------------GAGGGAACG---------CTTTGAACGGAA----AACACGTATCAATTACACGATTGTCAAGAAGGTTcgtcgaa-----------------aaataaatggtAA--
i caeSp111.Scaffold630  C 0 I 25
s caePb3.Scfld02_0       2398393 289 +  4147112 --cttcatttcatttaga---------GTATGAAGGAGTCTGAAA---CgagaaaattaaagtcaaagttaaggagaaaagcgagaaaaagagacattcgagagtaagaaagaaaTTGGTTTGGTTTC-----------------TCGAG---------AG---------GTGTCGGCAACACTAATCTGCACTTGGTAACT-ACACGACGACG----CGGGACCCC---GTAGCAGGTCTCTGTGACTGGACATATCGGATTACGAGAAGCAGGAG----------------AAGGGAACG---------CTTTGAACGGAA----AACACGTATCAATTACATG------AAGAGGGTTCCTCCAA-----------------AAATATATGGTAA--
i caePb3.Scfld02_0      C 0 I 63
s caeJap4.Scaffold17084   315143 309 +   375229 ---TTCATTGCACTGAggtaattctgaaaaaaaaaacacgtggaa---aatgaaatt----aacataactaggaaattgaaataggaaaacaaaaaacaaagag--agataaaaGTTGTATTGTATTTGTTCATATTTGAGTAAGACAAGTGGGAATTAAG---------GTGTCGGCAACACTAATCTGCACTTGGTTACTAACCAAACGA------CAGGGCCCG---------AGCCGCAGCGGCTGGACATATCGAATTAC-----------T----------------TTAGGAACG---------CTTTGAACGGAA----AACGCGTATCAATTACACG------ACAAGAGGCGGTCGAA---------AAGAAAGTTAGCAAgttgaaaga
i caeJap4.Scaffold17084 C 0 C 0

a score=-4756.000000
s ce10.chrX              4128687 19 + 17718866 ---TAGTTTCAAAATTGAGAAT
s cb4.chrX               9233459 12 + 21540570 ---TCGTTATAGAGT-------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1110213 12 -  4500979 ---tcgattcgaAAT-------
i caeRem4.Crem_Contig0  I 5 I 36
s caeSp111.Scaffold630  14842601  5 - 20921866 ---TGAAT--------------
i caeSp111.Scaffold630  I 25 C 0
s caeJap4.Scaffold17084   315452 15 +   375229 aataaaacagaaaaa-------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2398682 63 +  4147112 I

a score=-4999.000000
s ce10.chrX              4128706 25 + 17718866 TAAGA---------TTTGGTTTT----AGGAAGAAACG
s cb4.chrX               9233471 33 + 21540570 -AAAGCATTTTCTTTTAGactct----cagaaaaaaaa
i cb4.chrX              C 0 I 30
s caeSp111.Scaffold630  14842606 23 - 20921866 --------------TTAGATGAtga-ccagaaaaaaag
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold17084   315467 15 +   375229 -----------------------gagtGAGATCAAACC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2398682 63 +  4147112 I
e caeRem4.Crem_Contig0   1110225 36 -  4500979 I

a score=-1840.000000
s ce10.chrX              4128731 6 + 17718866 ACTGCG
s cb4.chrX               9233534 6 + 21540570 AACACG
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   1110261 6 -  4500979 ACCGGG
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold630  14842630 6 - 20921866 ttcaGG
i caeSp111.Scaffold630  I 1 I 5
s caeJap4.Scaffold17084   315482 4 +   375229 GTTG--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2398682 63 +  4147112 I

a score=138511.000000
s ce10.chrX              4128737 205 + 17718866 CGGCAATTGTGTAATGATTATAGAGA------G-GTGTGCAGGAGCTTCGGTAATGCGCAGATGTCTTGTATGAGTCC-----------AGA------AGAAGAAGAAGAAGACGTTCTTCTTATTCTTCCCCA------TTTCTTACGGGACCGTTATAATTGTATTT-GGGAATGG----------GTGTGCAACGACTGCTTAGCTTGAGAC--GGAAGGGTGTCGATAATTGACG-ACGAACGGA
s cb4.chrX               9233540 202 + 21540570 CGGCAATT-----ATGATTATAGAGAGAAAATG-GTGTAGAAAAGGTTGAATAATGCGCAGATGTC----------CCCCTCGC-TCTTAAGATGCCCAGAA----------TCGTTCC------TTAGgccaatttctttttcttacgGGACCGTTATAATTGTATTT-GGAAATGGGTATATGGGTGTGTGCGACGACTTCTTATAT------------GGGTGTCGATAATTGACG-AAGAGCGGA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1110267 199 -  4500979 CGGCAATTGCGTAATGATTATAGAGA------G-GTGTAGAAAAGCTTGGGTAATGCGCAGATGTCTTATATGAGTCCTCTTCC-TCTTAGA------AGAA----------ACGTTCC-------TAGCCCAA------TTTCTTACGGGACCGTTATAATTGTATTT-GGGAATGG----------GTGTGCAACGACTGCTTAGCTGAAGATG-GGAAGGGTGTTGGTAATTGACG-ACGAACGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14842641 200 - 20921866 CGGCGATTATGCAATGATTATAGGGA------GAATGTAGAAGAGCTTGGGTAATGCGCAGATGTCTTATATGAG-CCTCTTCC-TCTTAGA------AGAA----------ACGTTCT--------TGGCCAA------TTTCTTACGGGACCGTTATAATTGTATTTGGGGAATGG----------GTGTGCAAAGACTGCTTAGCTAGAGATGAGGAAGGGTGTCGATAATTGACG-ACGAATGGA
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0       2398745 191 +  4147112 TGAGGATTAGGTAATAATTATATAGA------G-GTGTAGAGAAGCTTGTGTAATGCGCAGATGTCTTATATGAG-CCTCCTCT-TTTCTTG------AGAA----------ACGTTCC--------ATCCCAT------TTTCTTACGGGACCGTTATAATTGTATTT-GGGAATGG----------GTGTGCAACGACTGCTT-----GAGAT--GGGAGGGTGTCGATAATTGGCG-ACGAACGGA
i caePb3.Scfld02_0      I 63 C 0
s caeJap4.Scaffold17084   315486 193 +   375229 CGGCAGTTATGTCATGATTATAGAGA------G-GTGTGGAGAAGCCTCCGCACCGCGCAGATGTCCTATATGAG-CCTCTTCCGTCTTAGACGGCGAAggt----------tcatttc--------------a------tttcttacGGGACCGTTATAATTGTATTT-GGGAATGG----------GTGTGCAACGACTGCTT-----GAGAC--GGAAGGGCGTCGATAATTGGCTCGAGAACGGA
i caeJap4.Scaffold17084 C 0 C 0

a score=3745.000000
s ce10.chrX              4128942 27 + 17718866 TAGGGCAGTTATACTTCAAG----AGTGAAT-
s caeRem4.Crem_Contig0   1110466 24 -  4500979 TGGAGTCTTAATACTTTGAGACAT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14842841 20 - 20921866 TAGGTTATTAATACTTTAAG------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2398936 20 +  4147112 TAGGGTTTTAATACTTTGAG------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   315679 21 +   375229 TGAGGTTATAATACTTTTAG-----------A
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9233742  8 + 21540570 I

a score=-26977.000000
s ce10.chrX              4128969 89 + 17718866 TTGACACAGAGTAACATTTTTGAGAAGTCTCCCAAAATTTAGACAATTTTTCTGAAAATTTTTCTCTAATACCCACTGTAAGAAAAAAT
s cb4.chrX               9233750 46 + 21540570 ----------TTAACACTTTGAGA-----------CATCTCAAGATTTT--CTAAAGATC--------------------Agaagaaat
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   1110490 54 -  4500979 ---TTAGAAATgacaattttgaag---att----tcatttgaacatttt-----ggaatT--------------------AAGAAAACT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  14842861 50 - 20921866 -------ACAGAATTATCttgaagaaaact----aaaactCAACcttt------aaga----------------------agaaaaaca
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0       2398956 36 +  4147112 -------ACAGAAATTTAGTGCGGGGAA------AGATCTCA----------------------------------------GAAAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   315700 28 +   375229 --------------------------------CGgaattttgacaaaat-----aaaa----------------------gaaaaaa--
i caeJap4.Scaffold17084 C 0 C 0

a score=-14702.000000
s ce10.chrX              4129058 69 + 17718866 TGTGTACAGCTAGCGACGAAATGTTTTGTCGTTTTAAAA-ATGAAGTTGTCACTATTGAAATGTATAA--AA
s caeRem4.Crem_Contig0   1110546 51 -  4500979 GGTATGTCGTTAGAA---------TGGTTTGTTTTTAGACACTACACTG----------AGTGAATTAaa--
i caeRem4.Crem_Contig0  I 2 I 63
s caeSp111.Scaffold630  14842912 33 - 20921866 ------------------------ggaattgagcataaa-attcatttg----------gatATTTAA----
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0       2398992 31 +  4147112 --------------------------GATCCTTCTCAGA-ATGACATTG----------AACctataa----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   315728 31 +   375229 ----------------------aaagcaaacactttaaa-atgaaa-------------aatagata-----
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9233796  0 + 21540570 C

a score=-604.000000
s ce10.chrX              4129127 86 + 17718866 CATTCCTAACAAACTTCTCATAAGTCGAACTTTTTTTAAAGATTTTTTTGGCCAAAATATTATAGATAGTTTTCATTGGTTTTCCC
s caeJap4.Scaffold17084   315759 36 +   375229 ------------------------------tttttcta------tgtttggtt-------------tagttttta-tgtttattcc
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2399023  0 +  4147112 C
e cb4.chrX               9233796  0 + 21540570 C
e caeSp111.Scaffold630  14842945  0 - 20921866 C
e caeRem4.Crem_Contig0   1110597 63 -  4500979 I

a score=-10040.000000
s ce10.chrX              4129213 77 + 17718866 ACAGAAATATTCTTTGTTTTAAAATCGATTCGCTACTTTGCAATGTTTCTGCTTTAAAATGTGGTAAAATCTCGTCA
s caeSp111.Scaffold630  14842945 15 - 20921866 ------------------------------------------------------TAATATCCcttaaaa--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2399023 15 +  4147112 ------------------------------------------------------aaagagagagaaaaa--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   315795 27 +   375229 -------atttttccgtttcgtttccgtctcgtt-------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9233796  0 + 21540570 C
e caeRem4.Crem_Contig0   1110597 63 -  4500979 I

a score=-6438.000000
s ce10.chrX              4129290 67 + 17718866 TTCAAAAAAAACCTCACACAAAAAGAATATAACAAAAAAAAACGCCCTTGGA-TGGAATAAACATGAT
s cb4.chrX               9233796 39 + 21540570 ttcgaagaaaa-------------------actcaaatcaagc----------gaaaaaaaacacatc
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold630  14842960 46 - 20921866 ---acagaaaa-------------------aacccaaaaactcATTTGCTGGGTGTGATAAATATGTC
i caeSp111.Scaffold630  C 0 I 11
s caePb3.Scfld02_0       2399038 38 +  4147112 ---acagaaaa-------------------aacaagaaaaagccT--------TGTGATAAATATGTC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17084   315822  9 +   375229 --cACAAAAAT---------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1110597 63 -  4500979 I

a score=108093.000000
s ce10.chrX              4129357 378 + 17718866 GCCTAATGAGAATTTTCAAGAACCACTCTACATTTCTCTAGACACCCATGAGACGAAAAAAACAACCTTAAATTTAGTAGAAT---AAAAACAACA-------ATGAGGAACA-------------------------------------------GGCTACTTCATAAACGTATAAATTTA---------CTTTCGACTCATTGAGCTCACTAGAAAGGTTATAATTCGGAATTGGTAA----AAGGAGATTAGTGCAATGGCTTC--AGGAAGC---------------AGAAGCCGAACTA--CAAAAATGGAGAACAATAAATGCAATTC-TGATGGAAAATAGCGATAAATCCT--GGCAAAAGTAAAGT-----GCGAATTTGATTACTTTTACGTATTAACGCAGTGG-GGAT-AGAATAAAGAAAAATTGAAAGCAGGA--------------------------ATTTAATAGAAAATC--TTATCTGATGG
s cb4.chrX               9233849 374 + 21540570 GTctaatgagaattttcaagaacCACTCTATGGACCC-----CTCACTCTGAcagaaaaacctaaa---------aacaggag---aaaaattgga-------attagaAGATTCTATCCACCGTGTAAGCGGTAAATA-----------------GGGAAAT-TTCAAGGAAATCAAGATTTC------TTTTCTGGCTCATTGAGCTAAATCTATAGGTTC-------A-------------GAGGAGATTAGTGAAATGGCTTC--GAATGTCGTCG-----CGAATATGTATAAGAACTA----CAAAGCAAGAAT-ATAAATTCAATTCCTGATGGAAAATAGCGATTGCCGTAA-AGTAAG---AAAGT-----GTGAATTTGATTACTTTTAGGTATTAG-GAAttagaaaataggaaaagagG-----------CGGGA----------------AA--------TTCTAATGAAAAACC--TTATCTGATGA
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1110660 435 -  4500979 GCctaatgagaattttcaagaacCACTCTATGTCCCCC---ACGCAtacacacaaaaaaagagaaa---------agcaaaaacctaaaaacctaa-------aaacaaaGAACATACCAATACATGAATTGATATTTGCGTATAAACCCGAACGCGGTAAATATGTAAGGAAATCAAGG-----------CTCTCGGCTCATTGAGCCAACTCTATAGGTTA-------GAATTGTGCGATTTAAGGAGATTAGTGAAATGGCTTC--AGAAGGCAGAGGAGAAGGAATAAGAATACAAAATA----GAAAAGGAGGACAATAAATGAAATTCTTGATGGAAAAGTGCGATAATTCTTG-AGTAAAAGTAAAGT-----GTGAATTTGATTACTTTTACGTATTAG-GTATTAG-AAATAAGAAGAGTGGAATAAAGAAATTGGGATGAA-----AATCGCTAA--------GTCTAATAGAAATTC--TTATCTGATGT
i caeRem4.Crem_Contig0  I 63 C 0
s caeSp111.Scaffold630  14843017 376 - 20921866 GCCTAAtgagaattttcaagaacCACTCAATGTCGGCC----AGCCTCCCCgacaaaaaaccgaaa--------taacaaaac---aagaattgaa-------atgagaatataATGCACATCCGACAGC--------------------------GGTAAATATGTAAAGAAATCAAG------------CGTTCGGCTCAGTGAGC-----CAAAAGGTTA-------CAATTGTTCG----AAGGAGATTAGTGAAATGGCTTG--AGAACAC----------GAATAAGAAtacaaaatg-gaagaaagcGACGAcaataaatgaaattc-tgatGGAAAAGAGCGATAATTCCA--AGTAAAAGTAAAGT-----GTGAATTAGATTACTTTTACGTATTAG-gtagaag-aaaatgggaagcaagaatgaagaaaatggaa----------------aa--------ttttaatagAAAATC--TTATCTAGATG
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0       2399082 405 +  4147112 GCCtaatgagaattttcaagaacCACTCTTAGTCTCCC---AAACCTACACCAACAAAAACCCaaa--------taacaaaac---aagaaTTCAATCCCAGTATTAGAATACAGCCCATTTCCGATAGC--------------------------GGTTAATATGTAAGAAAATTAAG------------TGTTCGGCTCACTGAGCCAACTCAAAAGGTTA-------GAATTGCCTA----TAGGAGATTAGTGAAATGGCTTC--AGAAAGCAGAATC---GGAATAAGAGTACAAAACGAAAAGGGAAGAAGGACAATAAATGAAATTC-TGATGGAAAAGAGCGATAATTCCT--AGCAAAAGTAAAGT-----GTGAATTTGATTACTTTTACGTATTAG-GTattag-aaattagaaagaCGGAATAAAGAAAGCAAAG----------------AAGGGAGGGGTTCTAATAGAAATTC--TTATCTTGATG
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17084   315831 373 +   375229 GACAAATGAGAATTTTGAAGAAGCTCTCGA------------------------GACAGAATTGAA---------Accacaag---aaaaacgaaa-------tgCATAAT---------------------------------------------TCTAAATATCACAGAAAGCCGACAATTCACCTAGTAGAACGGCTCAGTGAGCCAACTCTAAAGGTTG---GTTAGAATCGCGCGATG-CGGGAGATTAGCGCAACGGCTTCTGAGACAAC---------GGGAGACGGCGACAGCGTC------GGAGAGCGGCAATAAATAGAATTC-TGATGGAGAATAGCGATAATTTCAATGAGAAAAGTAAAGTACAAAATGAATTTGATTACTTTTAGGTATTAG-GTTTTAg-ata----------gaaagaaagaaagcagAGTCAGCGCACATATGTACG--------TGGTAAACGAGAATTAATTATCTGATGG
i caeJap4.Scaffold17084 C 0 I 47

a score=5281.000000
s ce10.chrX              4129735 65 + 17718866 ---------------------GAGTTGAGAACAGA--GC---------AAGA-------ACTGAGCATTAGCG-GAAATATGGAAATGA-GGGTGTTTGGACGAGA
s cb4.chrX               9234223 90 + 21540570 AGGCAAAGGAAGGAAGGAGGAGAACAAAGAGCCGAG-GTTTCgc----taaa-------aaagagaaaaaatgtagaaTATGGAAATGA-GGGTATTTGAGA---A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1111095 79 -  4500979 TGGACAAAG-----------------AAAAGCCGagcgttttga----aaaatgtagggaaagaacaaaagtg-aaaatatggaaatga-gGGTATTTGAGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14843393 82 - 20921866 TGAATAGACAAAGAAGGGGCCAAGTAGAATACCGA--GCTTTACCCTTCAAA----------------AAGTG-GGAATATGGAAATGA-GGGTATTTAGga----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2399487 76 +  4147112 TGAATAGATGAACAAAGA---AAACCGAATACCGa--gctttga----gaaa----------------aagtg-ggaATATGTAAATGAGGGGTATTCTCGg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   316204 47 +   375229 I

a score=243950.000000
s ce10.chrX              4129800 499 + 17718866  
s cb4.chrX               9234313 597 + 21540570  
i cb4.chrX              C 0 I 326
s caeRem4.Crem_Contig0   1111174 531 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  14843475 510 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2399563 511 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   316251 481 +   375229  
i caeJap4.Scaffold17084 I 47 C 0

a score=-12632.000000
s ce10.chrX              4130299 64 + 17718866 GT--GAAATTGGAAGTTGAAATAT-TCCAGCAAACTT----GAAATTG---------TTATCTTAAATTAACACA-AGTTT---
s caeRem4.Crem_Contig0   1111706 76 -  4500979 ctgatgaattgaaaattctgaaat-tgtcgGAGAATT----ATATTTGTAAGATTCATGATTTCAAATAAAcacacaattt---
i caeRem4.Crem_Contig0  I 1 I 27
s caeSp111.Scaffold630  14843985 57 - 20921866 ----ttaattgagaaaattaatAT-----GAAAGAGt----agtatt----------tgaaaaaatattaacaaa-agttt---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2400074 60 +  4147112 ----tttaaagaaaagatggatgtctgtaaaacaaaa----attgtc----------tAATTgcattttaataaa---ttt---
i caePb3.Scfld02_0      C 0 I 918
s caeJap4.Scaffold17084   316732 70 +   375229 --GTTCAAAAGGACATACTTTGAA-GGCAAGAAAAACtatgaaagtt----------tgaaaacacCAAAATACG-ACATTCTT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9234910 326 + 21540570 I

a score=-276.000000
s ce10.chrX              4130363 3 + 17718866 ATC
s caeRem4.Crem_Contig0   1111809 3 -  4500979 CCC
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold630  14844042 3 - 20921866 ttc
i caeSp111.Scaffold630  C 0 n 0
s caeJap4.Scaffold17084   316802 3 +   375229 ATA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e cb4.chrX               9234910 326 + 21540570 I

a score=-2638.000000
s ce10.chrX              4130366 121 + 17718866 AGTATTTTTTATTTTTTTGGAAATACCTTAATTCATAATCTTA---AGAAAAAC----AATTAGACAATATGCATATTTTCTTTGTAACA------TAAAA-----TGGGTACATGTAAAGT----ATACTTACCCCGACAAG
s caeRem4.Crem_Contig0   1111812 117 -  4500979 AGCATTTTTTGCT------GAACGGCTATATGTCATAGCTTTATTCCAAACGAC----ATTTAG----------ttccttttttggaaaagttctcTGAAA-----TGAAGACACGGCGCGTGGTGACACTT-TCCCGAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   316805 127 +   375229 AACAAACTTGGTTTCTGTGGTACGCCGCAAATTCATTTTCATTGCCgagaaaattggaatttaGGC--------GACAATTCTGAGAATGAT----tgaaaatatgtatgtacatattagGT----ATACTAATTTCAGTAAG
i caeJap4.Scaffold17084 C 0 I 2985
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e cb4.chrX               9234910 326 + 21540570 I
e caeSp111.Scaffold630  14844045   0 - 20921866 I

a score=-1298.000000
s ce10.chrX              4130487 181 + 17718866 GTTAACTACGTTGAAAGATTTGAGTGATCCTTTTTTCCATATTAGGA---------TTACTAGTTAGGATTAATGTTTTTCTAAGCCCAAAAG---------TGTAAATAAATTTAACGT-----------------------TGCAATTTAATTATCATTATTAAAAGAAATAAATAGAAAACGTATTGGAATATATTTTGTGCAACGCATGTCCTAAAAA
s caeRem4.Crem_Contig0   1111929 204 -  4500979 ATGGAGT-CGTGGCACACTttgttctcgtttttcttcctcGTTCGAACTCACacgttttcaaaatctgaaggatgtttt--caaaaccaagaatCATTCTTCTGCAAGTACTTTGTGCGTCATTCCTTGTGCTTTCGCCAAAGTGCAAATTACT--ACACACTTAAAAGA---AAATGTAAACAGTTTTCGTCTTTAACT----------AGGTACTGAAAA
i caeRem4.Crem_Contig0  C 0 I 249
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e cb4.chrX               9234910 326 + 21540570 I
e caeSp111.Scaffold630  14844045   0 - 20921866 I

a score=0.000000
s ce10.chrX              4130668 219 + 17718866 ATAAATATCAGAATCTCTAAAACTTATTCTTTCAATTTTGGTTACCACTTCTGAAAATTTTTATCAGTATTAAAATGAGCAATTCAGTTTGAAAAGCCGGAAAAGTTACCATTGCTGATTTTCAACTCGATGGTCCAACAATGCAGTTCAGTAGCGAAAATTGCAAAATTAGACCAGAAAAAAGAGGAAAATTTTGGGGTTTTGTATGAAGTGTATCTC
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e cb4.chrX               9234910 326 + 21540570 I
e caeSp111.Scaffold630  14844045   0 - 20921866 I
e caeRem4.Crem_Contig0   1112133 249 -  4500979 I

a score=125.000000
s ce10.chrX              4130887 165 + 17718866 GGTTTACAATTAACATGAAAAAACTATTAAAATCACGTTTGCAGAAG-TGA-CGGAGTTTTAAAAAACGACCAAACTTTTCGTTTTCAATTTTTTTTTCATCTCGAAAAA-ATACCCGAAAAGTGGTGGCACATTTCCTGAAAAGTAGTGTCATGTCACTACAAAAGA
s caeRem4.Crem_Contig0   1112382 149 -  4500979 Aatcttcaataaat-taaatataCCTTTAACACCCC-----CGGCAGCTGACCGTAAACTTATGATATTAATTGAACTATCGTTTTCACGGTTTTAACAAGTTTGAGAACTACACCCATAGAG------------TTTTGAAAAGTAGTAGCGT-TTAGAGCACAATA
i caeRem4.Crem_Contig0  I 249 C 0
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e cb4.chrX               9234910 326 + 21540570 I
e caeSp111.Scaffold630  14844045   0 - 20921866 I

a score=1784.000000
s ce10.chrX              4131052 70 + 17718866 TTTC---TTCCTTGTTTGAACTCACACGATTCCGTAATCTGAAGAGGTATTTT-TGTCCAAAAACCAGTTTTCT
s cb4.chrX               9235236 71 + 21540570 tttc---ttcctcattcGAACTCACACGATTTCCAAATCTGAAGAACGTTTTCAAGACCGataatcagattttt
i cb4.chrX              I 326 I 751
s caeRem4.Crem_Contig0   1112531 62 -  4500979 TCTCAAATGCCTTGAAAGCTATCAAACtttttccaa--ctgaagaaatgttttataaatattaa----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e caeSp111.Scaffold630  14844045  0 - 20921866 I

a score=-2012.000000
s ce10.chrX              4131122 329 + 17718866 GCAAGATTTTGT---TCCGTCATTTTTGGAAAGTTGCATGTTAAACAAACTATTATTTGAAGCAATTTATTAAATCAAGAGTAAAAGATAAAATTTACACAATTTGGAGAAAATTCACAAAAATGAGTGCATCATTTTTGTTGG--TTAGAGTTAAATCCTCCAAAGGAGGCAGGCGTGTATAGAAAGAGTGATG---CCTGTCTCACACCATT-------AGTAA--AATTTTGACAAAGCCTAATATAAACTTTCG------ACGTGG--TAAAAACATCCGAATG--------TTCCTGTGTT--TTTTTTTAATTTTTCTGTT-TTTCACTCC--------CCATTCTTATC-----------------AAACAGATAAAAAATGA
s caeRem4.Crem_Contig0   1112593 332 -  4500979 gctatattttgcctgttggcaattttttaataattcc----------------------------TTTATGAAA---------------AAGACATAC-CGCCTTGAATAGGTTTTGC-----TGGGGGCATCTCTATTAGTGGTTTTACGGTAACATCCATCAAAG---------TTTTGTCAAAACAATGATAACCCCttgctcatttttttgtcCGAGAGTGGGTGATTAGGATCAACCAACatttaagttttcaaattacaCAAGGATTGAGAATCTTCAAATGAGAATCTATCACAATGCTCGTGTTTCTAAAATTAGTGTTATTTCAGGTCGAACATAACAGTTTTAATCATTTTATGACATCTGATAAACAATTAGAAGATGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e cb4.chrX               9235307 751 + 21540570 I
e caeSp111.Scaffold630  14844045   0 - 20921866 I

a score=213.000000
s ce10.chrX              4131451 2 + 17718866 ------GA
s cb4.chrX               9236058 2 + 21540570 ------GA
i cb4.chrX              I 751 C 0
s caeRem4.Crem_Contig0   1112925 8 -  4500979 GACCACGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2400134 918 +  4147112 I
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e caeSp111.Scaffold630  14844045 0 - 20921866 I

a score=-737.000000
s ce10.chrX              4131453  3 + 17718866 ----------CAA
s cb4.chrX               9236060  3 + 21540570 T----------AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1112933 13 -  4500979 TCTCAATTtccaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2401052  3 +  4147112 ----------CAA
i caePb3.Scfld02_0      I 918 C 0
e caeJap4.Scaffold17084   316932 2985 +   375229 I
e caeSp111.Scaffold630  14844045  0 - 20921866 I

a score=45342.000000
s ce10.chrX             4131456 140 + 17718866 ------------------------AATGATATGAATCAAAAAGTTTCTCATTTGACAGGTGACGTGGTTGAAGTGTGATCTTATTGCTCTAGTCTAAATATACTCAC---AACGCATGTGTG--ATGCGACTCCTGTCT-------ATATTGTACTTTATCCCAGAAACTTCCAAT
s cb4.chrX              9236063 150 + 21540570 CTTGATTT---GAA------CTCACAGA----------ATAAGTT--TCATTCGACAGGTGACGCGATTGAAGTGTGATATTACTTCTCGATGCTAGTAATACTCTTCAGAGCGCATGTGTC--GGCTGCCCTCTGTGTCCT-CGAATAATTCACTTTATCCCAGAAACTTCCA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1112946 168 -  4500979 ctcaatttttcaaatagtcCCCCGCAGACATATCGTCGAGATGTT--TCATTCAACAGGTGACGCGAGTGAAGTATGATCTTATCGCTCGATGCTAATAATACTCTC---AGCGCATGTGTTCAggtctttctcttttcccc-agAATAATGCACTTTATCCCAGAAATTTCTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6089170 141 + 20921866 ------------------------GATAGATCGAGTCGA-AAGTT--TTATTTGACAGGTGACGAGACTGAAGTGTGATCTTG----TTGATGCTAAATATACTCACA--GGGGCTTGTGTT--CAATGCCCTCTGGTCCCCGGGAATAATGCACTTTATCTCAGAAACTTCCAGT
i caeSp111.Scaffold630  I 27885 I 462
s caePb3.Scfld02_0      2401055 145 +  4147112 ------------------------CATGTAATGAGTCGA-AAGTT--TCAATCGACAGGTGACGTGATTGAAGTGTGATCTTAATGCTCGATTCTAAATATACTCCCC--GGCGCATGTGTT--CAGTGCCCCCTGGCCCCCGAGAGTAATGCACTTTCTCCCAGAAACTTCCAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I

a score=-7621.000000
s ce10.chrX             4131596 156 + 17718866 ATGTAGGTCCAGTGTA----------AATTTA-----GTGAACGGACTTTGAGTT--CCACAGCAAAAAAAACCAGTTGCAAGATTTTAGCTTGTTATTTGATGATTTTTAATTTCTTCATAAAGTAAATATT-GTTCACATA---------------------------------------------------------------CATTTTAATGAAAATTGGTCGTTCTATAAAA---
s cb4.chrX              9236213 143 + 21540570 --GCAAGTTGAGTGTATTCAGAACGTTCTCTG-----ATCAATTAACAACGATTT---------AAAAA--CCTGTTCGG----TTACAG-------TCGTATTGTCGCTAATTCCATTCGAGAACTGTTTGC--TTCACGTG-----------------------------------------------------------ATTTTATTCCAG-------TAGTGGTTGTTCTATGATA
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0  1113114 133 -  4500979 --TCAGATTGAGTGTATTCAGGGCGTTCTCTGGTCATATCAGTCAACAAAGACTTT-TGATAACAAAGA--ACTGATTAT----TTCTAG-------TCCGATTGTTGTTAATTC---TTAAAGGTAAAACGA--TTCACGTG-----------------------------------------------------------AATAAAT--------------------------TGAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401200 214 +  4147112 ----AAATTGAGTGTATTCAGTGTGTTCTCTG-----ATCAATCAATTGTGATTTTGTGATAACAAAGAACACTAATCAC----TTTTAG-------TCCGATTTTTGTTAATTC---AAGAAGACAAACAGCAGTTCACGTGATAGTTCCAGCAAGTGATCGTTCGATGAAGTTCAGAGACAATGGAAAAGGTTTGGCAACAATAAGTTTCAAAG-atcttgatgattttttgaaga--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-2859.000000
s ce10.chrX             4131752 33 + 17718866 ---CACCACTGGTCAGAGAATGTTTTACAATTAAAT-----
s caeRem4.Crem_Contig0  1113247 17 -  4500979 ATTTTATGCCGTTATGA------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401414 35 +  4147112 ---tggcACCGTTTAGAGCAAGTC---CAGTTTGCTCAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e cb4.chrX              9236356 42 + 21540570 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-3009.000000
s ce10.chrX             4131785 37 + 17718866 TCAAAG-----AACATTGAT-------TTTTTTAT-GAATTTTTAACTAC
s cb4.chrX              9236398 35 + 21540570 TCACGG-----AACGTTGAT-------TAtgct---atttttaaaacaac
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0  1113264 35 -  4500979 TCATAGTTTTCAATAATCGT-------TGTG-----GTTTTTGAAAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401449 41 +  4147112 ---------TCAATATTACTAGACTTGTATGTTTGGGAATTTGAATCTAC
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-2513.000000
s ce10.chrX             4131822 22 + 17718866 CTATTATATT----------TTTGAAGCAGTT
s cb4.chrX              9236433 31 + 21540570 aTTTTAAATTGAGATCGAAAAATAAACTGGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1113299 26 -  4500979 -----GAAGTGAGCAGAACATTTTGATACGT-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2401490 47 +  4147112 I
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-54168.000000
s ce10.chrX             4131844 295 + 17718866  
s cb4.chrX              9236464 531 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1113325 245 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401537 330 +  4147112  
i caePb3.Scfld02_0      I 47 I 99
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-523.000000
s ce10.chrX             4132139 44 + 17718866 TGTTGTATTTTCCATCAGTGATCAGAAAATGC-TTCCGAAATTGT
s cb4.chrX              9236995 45 + 21540570 cgttaactttttttcagggaatccaaaaaaatttattgaaatcct
i cb4.chrX              C 0 I 87
s caeRem4.Crem_Contig0  1113570 23 -  4500979 ----------------GCGAATTAAAATAAGC------AAATTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2401867 99 +  4147112 I
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=-1220.000000
s ce10.chrX             4132183 61 + 17718866 ATGTGTTCTTTGGACCCGATTACTTTTTGAGTCGCCCACAATCCTGAGAACCCGTCTACCA
s caeRem4.Crem_Contig0  1113593 30 -  4500979 A----------ACatccagtttttcttct---------------------tccgctTTCAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2401867 99 +  4147112 I
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e cb4.chrX              9237040 87 + 21540570 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=396.000000
s ce10.chrX             4132244 3 + 17718866 GTT
s caeRem4.Crem_Contig0  1113623 3 -  4500979 CTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401966 3 +  4147112 GTT
i caePb3.Scfld02_0      I 99 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e cb4.chrX              9237040 87 + 21540570 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=77.000000
s ce10.chrX             4132247 5 + 17718866 GTCAG
s cb4.chrX              9237127 5 + 21540570 GTTGA
i cb4.chrX              I 87 C 0
s caeRem4.Crem_Contig0  1113626 2 -  4500979 ---GT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2401969 5 +  4147112 GTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I
e caeSp111.Scaffold630  6089311 462 + 20921866 I

a score=51125.000000
s ce10.chrX             4132252 128 + 17718866 CAGCAATTGGTACAACGT---CCACTAAAA----ATGAGTCAA--AGACTAAAACGTAGCAGAGATCTCA--GATCTGTATCAAAAAAACAGCGTCATAGATCTTTTATC--TTTCTCTCATTGTCTTTTCCAATCACTCG
s cb4.chrX              9237132 118 + 21540570 TAATATTTGATCCAAGGTATCTAAAAACAAGTCCACCAACCGATACGACTAAAACGTAGCC-----CACAATGATCGGTATCATAAAAACAACAGCAGAGATCTTCT--C--CCGCT--------------CAATCACTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1113628 113 -  4500979 CAATAAATGATCCAACGT---TCAAAACAA----ATCAGCCAAGACGACTAAAACGTAGCC-----CACAATGATCTGTATCATAAAAACAACGCCAGAGATCTTTCTGT--CTCTT--------------CAATCACTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6089773 116 + 20921866 CAATATTTGATCCGACGT---TCAAAACAA----ACGAGTCAGGGAGACTAAAACGTAGCC----TTCCAGTGATCTGTATCATAAAAACAACACCAgagatcttttttcaacttct--------------ctaTCACTTG
i caeSp111.Scaffold630  I 462 C 0
s caePb3.Scfld02_0      2401974 110 +  4147112 ---TATTTGATCCGACGT---TCAAAACAA----ATCAGTCAATGAGGCTAAAACGTAGCC-----CACAATGATCTGTATCATAAAAACAACACCAGAGatctttttgt--cttct--------------ctATCACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  316932 2985 +   375229 I

a score=95066.000000
s ce10.chrX             4132380 227 + 17718866 AGACTCTT--TACTTCCT-------GGCACAC--------AAACTTCAGCTACTCAAT--ATGAATCAATGAAACAACT--TC--CCGCTATATGAACCACAGTTTC-GGCGCGTCACACCG-------------TCGCATTCTCAT------CGAATAACACTCGTCTACATGTGATTACAGCATGGAATA---CGAACTGGGTGGAGCGAATA--------CAACATG-ACTGATCGTTGTCACTTTTCAT---TCGC------------CTATTACATTAGTGATCTGTGTTCC
s cb4.chrX              9237250 271 + 21540570 AGTAGTCA--TTCTCTCTCTTCCTGGGCAAAAACGTCTAGAAACTTTAGCTAGTATAT--GAGCATCAATAAAACAACT--CCCACTTTCATGGGGGCCACAGTTTC-ACTACGTCACACCAAGGCAATCTTATTCTTCGTCTTCATT----AAACACAACACTCGTCTACATGTGATTACAGCATGGTATA---------GGGAGGAGCGAGTGAGAGGAAGGAACAAG-ATAGATCGCTTTCATTTCCT-----CAGTTTGTGTGTTCCTCCATTACATCAGTGATCTGCGTTCC
i cb4.chrX              C 0 I 2211
s caeRem4.Crem_Contig0  1113741 231 -  4500979 AGAAGTCA--TTCATTTGT------GGCACACTCGCTTA-AAACCTCGGCTACTATAT--GAGTATCAATGAAACAACT--TC--ATTTGCTATGATCCAAAGTTTC-ACTGCGTCAcatcg-------------tttcgttttttta----ttaAACAACATTTGTCTACATGTGATTACAGCATG--------------GGTGGGGCCAATTG-------TGAATACG-AGTGATCGATGTCACTTCAT-----TCAT---TGCGT---TCCATTACATCATTGATCTGTGTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6089889 230 + 20921866 AGATGTCA--TTCTTCCT-------GGCACACTCACT----------AGCTACTATATCGGAGTATCAATGAAACAACT--TC--TTTAACCATGGGCCACAGTTTC-ACTACGTCACATCG-------------TTTCATTCTTAT------TAAACAACACTCGCCTACATGTGATTACAGCGTGGAGTA---------GGGAGGAGCGAATA--------TAACTAG-ACTGATCAATGTCAATTCTCATTCGTCGT---AGCGT---TCCATTACATCACTGATTTGTGTCCT
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2402084 236 +  4147112 AGATGTCATTTTCTTCCT-------GGCACACTCGCTTT---ACTTCAGCTACTATAT--GAGTATCAATGaaacaactcatt--ttttgaaaagggcCACAGTTTC-ACTACGTCACACCG-------------TTTCATTCTTAT------ACAACAACACTCGTCTACATGTGATTACAGCGTGGAGTA---------GGGTGGAGCGAATA--------TAACAAG-ACTGATCAATGCCACTTCTCAT---TCAC---AGTGT---TCCATTACATCATTGATCTGTGTACC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  319917 218 +   375229 AGACAC----tttttttt-------GGGCCAC-------------TCAGTTATCAGCT--AAGTATCATCGAAACAAAT--CA----------TGGATCATTGTTTCTGCAACGTCACACCA-------------ATTCATTCTTTTTCTCCCTTAATTTCATTGGTCTCCACGTGATTACAGCGCTGAATGGACTGGGGTGGGTGGAGCG--TA--------GAACAAGAACAGATCGATGTCAT----------TCAT-----TGT---TCTATTACATCATTGACTTCTGTCCC
i caeJap4.Scaffold17084 I 2985 I 10

a score=-15322.000000
s ce10.chrX             4132607 74 + 17718866 -GACTAAATCATTTACAAT-GGTCTTCC---------------TTGTTGATGAACATTGCTTTTTGTTT---ATTCTCCG----------TTCTGTGGGGTTT-T-
s caeRem4.Crem_Contig0  1113972 87 -  4500979 -ATCTTACTAATTCGCAATGTGTTCTTCAGC---CCCAA----TTTTCTGTTCA-----CTTCCTTCTT---ATTTCCTATTCATTTGCTTTTATTGTGATTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6090121 63 + 20921866 -CTTTAATAAATTAACAAC-CGttctctgat---tttcaaaatttt--------------------------aatccCTA----------TTTTGTACTGTTTT--
i caeSp111.Scaffold630  I 2 I 240
s caePb3.Scfld02_0      2402322 83 +  4147112 -TCTTAATTAATTAGCAAT-TGTTTGGCAAC---CCTAAAGCTTTTTTCGCGAA-----CTTCCTCCGTCCATATTCCGA----------TTGGCAAAAGTTT---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  320145 81 +   375229 AACTTTATGATTTGGAAAC-TGTTTTCATATATATTGGAAAAGTTTTATGTTCG-----CTTATT-------TTTGTTCA----------CTTTGTATTGCTT--T
i caeJap4.Scaffold17084 I 10 C 0
e cb4.chrX              9237521 2211 + 21540570 I

a score=846.000000
s ce10.chrX             4132681 3 + 17718866 CTT
s caePb3.Scfld02_0      2402405 3 +  4147112 CTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  320226 3 +   375229 CTT
i caeJap4.Scaffold17084 C 0 I 342
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6090184 240 + 20921866 I
e caeRem4.Crem_Contig0  1114059 0 -  4500979 C

a score=-406.000000
s ce10.chrX             4132684 35 + 17718866 CTCGTTCGCGTTTA----GCAGACACTTTTGTTGATAGT----
s caeRem4.Crem_Contig0  1114059 34 -  4500979 CTTG-----GTTAA----GGTTGCACTCTTGTTGAAAAACCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2402408 34 +  4147112 CTTT-----GTTCACACTACCTGTCCTTTTGTTTACAGT----
i caePb3.Scfld02_0      C 0 I 277
e caeJap4.Scaffold17084  320229 342 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6090184 240 + 20921866 I

a score=851.000000
s ce10.chrX             4132719 26 + 17718866 TCTCAAAAACGATATTGCAAGGTCAT
s caeRem4.Crem_Contig0  1114093 23 -  4500979 GCTT---AGCAATACTGCAAGGTCGT
i caeRem4.Crem_Contig0  C 0 I 227
e caePb3.Scfld02_0      2402442 277 +  4147112 I
e caeJap4.Scaffold17084  320229 342 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6090184 240 + 20921866 I

a score=0.000000
s ce10.chrX             4132745 697 + 17718866  
e caePb3.Scfld02_0      2402442 277 +  4147112 I
e caeJap4.Scaffold17084  320229 342 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6090184 240 + 20921866 I
e caeRem4.Crem_Contig0  1114116 227 -  4500979 I

a score=286.000000
s ce10.chrX             4133442 33 + 17718866 AAACTTTGAACCTAAGGACACCTTCAA----------AGCTGT
s caeSp111.Scaffold630  6090424 38 + 20921866 aaactttgcCC-----GACATCTTCAACCACACActaatttct
i caeSp111.Scaffold630  I 240 C 0
e caePb3.Scfld02_0      2402442 277 +  4147112 I
e caeJap4.Scaffold17084  320229 342 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeRem4.Crem_Contig0  1114116 227 -  4500979 I

a score=300.000000
s ce10.chrX             4133475 1 + 17718866 C
s caeRem4.Crem_Contig0  1114343 1 -  4500979 C
i caeRem4.Crem_Contig0  I 227 C 0
s caeSp111.Scaffold630  6090462 1 + 20921866 c
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2402442 277 +  4147112 I
e caeJap4.Scaffold17084  320229 342 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=521.000000
s ce10.chrX             4133476 5 + 17718866 -TTCAA
s caeRem4.Crem_Contig0  1114344 5 -  4500979 -TCCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6090463 5 + 20921866 -ttcaa
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  320571 5 +   375229 TTTCA-
i caeJap4.Scaffold17084 I 342 C 0
e caePb3.Scfld02_0      2402442 277 +  4147112 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=32930.000000
s ce10.chrX             4133481 188 + 17718866 AGTTCAAACCATCATTTTTTTTTTGAAAAACAC-----TCCAGTCCTCCT----AGTCAGTTGTTTCCTGCCGCTCTATCGCATTTT----AGAAGAAACAACGCAAGTTGAAGATAGCGCTGAC---AGATAACCATTTTAAACCTTTTTTCCTATTCAAATAACAGATTGTTATG-ATTTTTTC-------------GTTCAGTTAACTTATTCAA-----
s caeRem4.Crem_Contig0  1114349 202 -  4500979 AGTTCAAaccttca------tttttaaaaacaagtcTTTTTCGTCTGTCT----TGTCAGTTGTTTCTCGCCACTCTATCGGCTTTT-CACGCA--ATACAACACACGTTGAAGATAGGAGAGACGCAAAAGACACAAAAAGAACCTTTTTT-ATATTTACACATTTATTCATTACGAATTGACTTCACTTTTGAAGTGTTTCCTTGTTGTTTCTT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6090468 197 + 20921866 agttcaaaccttcaa-----ttttcaaaaacacgtCCTTTCTGTCTACCT----TGTCAGTTGTTTCTCGCCATACTATCGGCTTTTCCCCACAAGATACAACACAATTTGAAGATAGGCAAGAC---ATGAATACACattatatttttcct-ttctatATTCTTTAAATTGCTTTGTAGTGATTC--------AGAAGGTTCattgacacttttcaa-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2402719 200 +  4147112 AGTTCaaaccttcaa----tttttcaaaaacacgtCCTTTCTGTCTATCTATCATGTCAGTTGTTTCTCGCCGCCCTATCGGCTTTT-CACGCAAAATACAGCACTCATTGAAGATAGTGGAGAC---AGAAATACACA-TAAACTTATATA-TTTTATATACTTTCAGTCATTACGAATtgtctt--------tctgtttttcttaggagttctcaa-----
i caePb3.Scfld02_0      I 277 C 0
s caeJap4.Scaffold17084  320576 156 +   375229 AGTTCAAACCTTCAC-------TTTAAAAACACGTCGCTA--------------CGACAGTTGTTTCTTGCCGCACTATCGGCTTTT-CACGGA-GATAAAAC----------GATAGGTGAGAG---AGAAAGACatgcaatgtttttttt-tc--------------tcattacg-ATTTATTC---------------ACTTTGAGGCTGATTAATTCAA
i caeJap4.Scaffold17084 C 0 I 1456
e cb4.chrX              9237521 2211 + 21540570 I

a score=12352.000000
s ce10.chrX             4133669 187 + 17718866 AAATTAGTGATCGTGATCAAAAAGTAGTTCACACCATTCAATATTTAATTTTTGATGCAGGTCCGAAGTTTCGCGAAGAATCG----GCTTGTCTTCCCATTTTTGATGATTTCATACTGATAAAACGTTATTGAAACAAGAGGAACAATGTTTTTGTTTTTTTGAAGATGTTTTTTGAGATCATAAGGTT
s caeRem4.Crem_Contig0  1114551 164 -  4500979 ---TTGATGACTTGAGTTTTGA--TTGTTTCCTGAATAGGCAA-CCATTTTCTGGT----CGAAGAAAGTTCGAGAACACAAA-ACTGTCTATTTAACAAATTCGGATGATTTCATCTGAA-----------TGAAACATGAGGTtcactgtttttg-ttttc---aggtgtTTTTTGA-ATCATAAGATT
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold630  6090665 160 + 20921866 aaattaatcatgtgaat-------ttattttcaaaaattgaa----agtttttggt----tttagaAGTTTCTAGAACATTTA-GTCGTTTATTCGACCAACTTGTATGATTTCATccgaa-----------gaaaacgaagagtttattgtttttgtttttc---agttgttttttga-atcataaGATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2402919 127 +  4147112 aaa-----------------------attttc----------------------tt----ttcagaactttctagaacaatcACTTTAACAATTTGACCAACTCGGATGATTTCATTACCA-----------TGATACATgataataaatgtttttgtttttg---aggtgttttttga-atcataaGATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=418.000000
s ce10.chrX             4133856 3 + 17718866 ACA
s caeSp111.Scaffold630  6090825 3 + 20921866 TCA
i caeSp111.Scaffold630  C 0 I 50
s caePb3.Scfld02_0      2403046 3 +  4147112 TCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeRem4.Crem_Contig0  1114715 32 -  4500979 I

a score=113.000000
s ce10.chrX             4133859 38 + 17718866 GAGTCTCCAAATAAAAGAGTCAAGGAG--GGTGACTGAAA
s caePb3.Scfld02_0      2403049 39 +  4147112 TTTACCACCAATATAAG-GTCAACGCGGAGGTGAACAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6090828 50 + 20921866 I
e caeRem4.Crem_Contig0  1114715 32 -  4500979 I

a score=-1099.000000
s ce10.chrX             4133897 16 + 17718866 ---AATACA------------------------TCTGAAATGT
s caeSp111.Scaffold630  6090878 40 + 20921866 ---AAAACACTTGAGtttgtttcttatttcatttttgatttct
i caeSp111.Scaffold630  I 50 C 0
s caePb3.Scfld02_0      2403088 43 +  4147112 AGGAAACCACACTGAAACACTTTCAGTTttaagtttgaagttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeRem4.Crem_Contig0  1114715 32 -  4500979 I

a score=-10594.000000
s ce10.chrX             4133913 72 + 17718866 --TT------TTAAAAAG-------GAATTTTTG---AAATTCCAGCATGGTTTCCAAACAACTGAGAACACATTTTTTAAGGCAACATG--------------
s caeRem4.Crem_Contig0  1114747 28 -  4500979 --TT------TTAGAAAG-------------------AAACTTTCTCACAataac-------------------------------------------------
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold630  6090918 95 + 20921866 ttttcatttattattagaagctctaaaatttttgatcaaatcTTATCTTGATTATCTA---------AATTCATATCTCAAGTTAGGATATAATAGAAAGCATT
i caeSp111.Scaffold630  C 0 I 39
s caePb3.Scfld02_0      2403131 44 +  4147112 tttt------tcaataga-------------------aaattttgtttcagtt----------------tttgtat-------------------gGAGGCCTc
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=64.000000
s ce10.chrX             4133985 36 + 17718866 --TTTTTTAAGGaattttttttgttttttaaagagttt
s caeRem4.Crem_Contig0  1114775 24 -  4500979 ttctttt-------cttttttcaatg-------actTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2403176 31 +  4147112 --cctttgaaaaaatctatttcgctg-----aaacttt
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6091013 39 + 20921866 I

a score=-12599.000000
s ce10.chrX             4134021 80 + 17718866 tttttaatt------tct---------aaaaataaaa-aaattttCCATTCGTCTTCATTTGAATTTATTTAAACCC------ATATATT---------------GAAACT-CCTTT-T
s caeRem4.Crem_Contig0  1114799 90 -  4500979 ---TCAATTCGATTGACCAATATTAGAAGATCAAATG-GGGTATACAATTA------ATATGAA--TATTAAAAACCAAATTGATACTTT---------------TAAACT-TATTGt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6091052 93 + 20921866 CTTTCAATTTGTACACCC---------ATATCACGTGTAAGTTGAT-----------ATA-AAA--TGTTTAATCTT-ATTTCATATTTGCATAATCCCTCTCCgaaaacagtattt--
i caeSp111.Scaffold630  I 39 C 0
s caePb3.Scfld02_0      2403207 71 +  4147112 tctttaattattctttct---------tgaaaacatG-GAGTTGATCGTTT---TGAATA-Gaa--tgtttcaatt-----------------------------gaaaca-tattt--
i caePb3.Scfld02_0      C 0 I 108
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=-4496.000000
s ce10.chrX             4134101  97 + 17718866 --------------TCTTCACTTCATTTTGTCTAAT--------TT-------CCTTCG---------TTTGTTTTCT--CTTGAAGGTCCCATCATCAGA--GACCACAAAAATA--T--GAGATGCACATCATTTTCACCC--------------
s caeRem4.Crem_Contig0  1114889  84 -  4500979 -------------------------gtttgttgaat--------tt---ttatcaTTCA------GAACTTGTTGACT----------GCTGGTCA-------AACTACAAGTATGATTTGGAAAAACTTGTTATTTAAAGCG--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6091145 149 + 20921866 ttcacaatttcaaTCCGTCATGTTGTTTTGTTAAATAGTGTCAATTCgattctcattcaaaaatggagtttgttttttcccCTCAGAAGCTCATCATCAATGGGACCACGAAAACAGAT--GAGATACTCATCatt------gtcttttcttctctt
i caeSp111.Scaffold630  C 0 I 4
e caePb3.Scfld02_0      2403278 108 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=-23636.000000
s ce10.chrX             4134198 203 + 17718866 TTTTTTTCATTCA----------AAGAATTTTACGAC-AAATGTTACTTTGAGCTCTTTGTTCGGTTTT---------TGGTGTTGAATGGAAACTGACAATGATAAGTTAT-CATATTTTGCCTTTAAT------TTTTGAAAGTTTTTGCATGATCATGCTCT---TTTCTTTAATGCTTTTAGT---------------------------------ATTATTTAACGTACAGAAAAATAAGTCAACTGCCtaaaaaatattt
s caeRem4.Crem_Contig0  1114973 239 -  4500979 ---TTATAAATGATTTTCTATCAAGTACTTTTGCGATGAAACATTTCTTTGAGAacaagttt---tgtt---------caaaactttgTGTAATTA--------TGATTTACGTTCTTTCTCTCACTAACCCTAACTATGCAACATACATACAACATGCAGCTTGA--TTGTTCTCATGTTCCAAATTGAGAAGGAGTTTGGTTGtttttttGAGGATCCATTTTTTGAGACACCACAAAAACAG--ACGAGATAGATAGATACCc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6091298 197 + 20921866 tctTCTTAACTGAGTC----TTACATAGTTCTCTGCT----CACTTcgttcagtttttcttt---gtttacGAACAACCAAAATTGATAGTCAATGGCAGCCGATAAGTTAT-CACATTTTCCCTCTTACC----ATGTTTAA-----ATGTATGATCAAGcttattcttgttttcattttacaCAC-----------------------------ATTCA-----------------AACACAG--gtgtatttgaaaaacattt
i caeSp111.Scaffold630  I 4 I 87
s caePb3.Scfld02_0      2403386 164 +  4147112 ttttttgaattcaatc-------aaTAATGCCCAAAT----------ATTAAGCACCTGTTT---TTT----------CAGTGCTGATAGCATTTGAATTCC--TAAATAACGAACACTTT---------------TATTCAA--------------caattctgtt-tcattttcactgttcaaac-----------------------------aatcatttttta-------ctgaaaacag--aattttccgtataa-att-
i caePb3.Scfld02_0      I 108 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=-29769.000000
s ce10.chrX             4134401 561 + 17718866  
s caeRem4.Crem_Contig0  1115212 332 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2403550 525 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I
e caeSp111.Scaffold630  6091495  87 + 20921866 I

a score=-11545.000000
s ce10.chrX             4134962 173 + 17718866 CACTCAACTGGAACACCTGTTCTTTGTACC-------AT-TCCATTCGCACCCACTTGGCGGTATTTTCTCTCAA--CTTATTATTTCTG----CGTATTAA---------CTTGTTATTG-------AGAATTGATCATTTTACT-------------TTTGAGATTTTTAAGAAGAAAAATTTGCAGTTAAAACTTCACTCGAAAGCTTCAAAA
s caeRem4.Crem_Contig0  1115544 151 -  4500979 ----------GAACACCtgttttttgtacc-------atgctgatgttttgcccttttacgttgttttctttgaag-tttggtttttCCGACAACTTTCTAT---------GACGTGATTG----------ttttagaatttcagt--------------ttcagatattcaaaACTCTACATCTGCA---ATATCt-----------acctaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6091582 175 + 20921866 CATTTAACTagaacattta-tttttgtacCATGGTCTATAGTCGTTCACAAACACctgtctttctttttttgaatgatttattctcttttatttcctATAAA---------AGTCCGACTG--------------ATCATTCCGATAATCGCagataaatttcagaaacttcaaaGT---GATCCGAA---TAAACT-----------CGTCAATG
i caeSp111.Scaffold630  I 87 C 0
s caePb3.Scfld02_0      2404075 170 +  4147112 CGATCTTTTCTAACATCTG-TTTTTGTATC-------AGACTCCTTTCTGGGCACTTGAAATTTCTCTTT--GATG-TCTACTCTCGCCGCCACCGTATAAATACCCCTCGATCCCAAATGTTAGCtcattcttcatctttcaGGTCACAACCGCTGAcatttgaatactt------------------------tt-----------tttccaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9237521 2211 + 21540570 I

a score=54033.000000
s ce10.chrX             4135135 260 + 17718866 ATGAACTCAATTCTACACGACGGCTTTTTtcatcaacac---gatcaccatcaccatgacgatcaccacgaccagcaccaAGAAATTAATCTTTTGCAGCCACCGGTGAGTA-----TCTTTTTTCCAGTTGTTCCCTCTTTCCTTCTATCGTT------TTAATGTTTTC----------------------TTTTCTGTTTTCCGTCCGATTCTT----------TTTTTGTTCAAAA-CGAACAATGAAGCTATAAAACGAACACCGCGGTCGGTTT--------GTTTCCATTTGATTTCACAGAAAAGAA
s cb4.chrX              9239732 260 + 21540570 ATGAACTCAATCCTACACGACGGATTCTTCCACCAACAC---GACCATCATCAGCAGGGCGATCAT---CATGAACATCCGGCGGATAATCTGATTCAACCTCCGGTATGCTTTTGATTCCTTTTCAAAGACTACATTCATGTTTGGCTTCTTCCAATGCCGAATGTGTTTT---------------CGGCCGTTTTCTCTTT------TGTTCGTT----------TTTATATTTCCAG-CCCGCAATGTGACTATAAAACATACATTTT-----------------GTCCTCTATCAGTTTCTTGGAACAGAA
i cb4.chrX              I 2211 C 0
s caeRem4.Crem_Contig0  1115695 244 -  4500979 atgaactcaaTCGGACACGACGGATTCTTTCATCACCAT---GATCATCATCACCATGACGATCACGAACATCAACATCCAGTAG---ATCTTATGAACCCTCCGGTATGTT-----TTATCTTTCAAAG--TACATATAt-ttcactttcgttcgtttcttattttcttt----------------------ttttatgttt------cttttctt----------ttgatgtttcCAA-CGAACAATGCGACTATAAAACATACATTTC-----------------GTTCGGAATCggttt-tcagagaagaa
i caeRem4.Crem_Contig0  C 0 I 497
s caeSp111.Scaffold630  6091757 220 + 20921866 ATGAACTCAATCTTACATGATGGATTCTTCCACCAACAc---gatcatcatcatcatgatGAC------CAAGAGCATCAAGCAGATAATCTTTTACAGCCCCCGGTATGTT-------CTTA----------CCAT-----------------TGAAACCGAATGTTTTTAT--------------CGGggcttttcgtttt------tgtt--------------gtCTTGTTTCATA-CAAACAATGTAGCTATAAAACATAcgtttc-----------------ttcaatttttgttctgtCAGAAAAGGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2404245 303 +  4147112 atgAACTCAATTTTGCATGATGGATTCTTCCACCACCACgatgatcatcatcatcatgacGAT------CATGACCATCAAGCCGATAATCTTCTTCAACCCCCGGTATGTTTCACATGTTTATTCTATTcctccatatttttttttgggtttctcaaactgaatctttctctttttctcttttttccggtgcttttctgttt------cgtttcttttcttttctgttcctGTGTCAAAGCGAACAATGTAGCTATAAAACATACGATTCGCTCggtttcttccttttccagtcctcgaattctctgaaaagag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I

a score=-1531.000000
s ce10.chrX             4135395 2 + 17718866 AA-
s cb4.chrX              9239992 2 + 21540570 CA-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6091977 2 + 20921866 -AT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2404548 2 +  4147112 -aa
i caePb3.Scfld02_0      C 0 I 879
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=-946.000000
s ce10.chrX             4135397 11 + 17718866 -CATTCATAATC
s cb4.chrX              9239994 11 + 21540570 -GAATAAAAACC
i cb4.chrX              C 0 I 1087
s caeSp111.Scaffold630  6091979  9 + 20921866 TCTTTGAAA---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2404550 879 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=911.000000
s ce10.chrX             4135408 23 + 17718866 GATCG-ACCTATGGTTTTTTCCCT
s caeSp111.Scaffold630  6091988 24 + 20921866 GACCGAACACATGATTTTTCCCTT
i caeSp111.Scaffold630  C 0 I 432
e caePb3.Scfld02_0      2404550 879 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9240005 1087 + 21540570 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=0.000000
s ce10.chrX             4135431 1197 + 17718866  
e caePb3.Scfld02_0      2404550  879 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e cb4.chrX              9240005 1087 + 21540570 I
e caeSp111.Scaffold630  6092012  432 + 20921866 I
e caeRem4.Crem_Contig0  1115939  497 -  4500979 I

a score=626.000000
s ce10.chrX             4136628 43 + 17718866 AAAACATCTGAAATCTCCTGATGACTCAAATCACGAGGAAATT
s cb4.chrX              9241092 41 + 21540570 AAAACATCTCAATTCTCGTAAT--CTctaaaaatgcacttttt
i cb4.chrX              I 1087 C 0
e caePb3.Scfld02_0      2404550 879 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e caeSp111.Scaffold630  6092012 432 + 20921866 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=-957.000000
s ce10.chrX             4136671 20 + 17718866 TCAGAAATTATCT-----ATGGAAA-
s cb4.chrX              9241133 23 + 21540570 tcgg--attctcTTTTCTATCCGAC-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6092444 20 + 20921866 TCAGTAATTATCC------TCCAAAA
i caeSp111.Scaffold630  I 432 I 11
e caePb3.Scfld02_0      2404550 879 +  4147112 I
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=-1622.000000
s ce10.chrX             4136691 14 + 17718866 CACTATATTTTCAT
s cb4.chrX              9241156 11 + 21540570 TAATATGTGTG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6092475 14 + 20921866 TCTTACAATCGACA
i caeSp111.Scaffold630  I 11 C 0
s caePb3.Scfld02_0      2405429 14 +  4147112 CACTACGATTATCT
i caePb3.Scfld02_0      I 879 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I
e caeRem4.Crem_Contig0  1115939 497 -  4500979 I

a score=61373.000000
s ce10.chrX             4136705 138 + 17718866 TGGGTTTCAAAGTTCACGTAAACAAAAGC-----CGA-CGGCACAAAACGTGCAAATGTTTATTTTCCCTGC------GAAGTTTGTTCAGCAA---------------------------CCTTTTTC----GACT-----------TTGTTTTGTTTT------------------------TGCAAAT-------TA------------GTATTTTTAGCAAT-----CAGACATCA
s cb4.chrX              9241167 221 + 21540570 GGAGTTTCAAAGTTCACATCAACAAGAAGAGCTTCGCGAATTGAAAAGCGTGCAAATGTTTATTTTCTCCGG------AAAATTTGCTCAGCAGTCACATTAGTAGTTTCTCTTTTTGCAACCGTTTTT--CTGACTACAATTAATCGtcattatgttttttttcccacCATACACACAACATCTGTAATTCTG----TACCtttcttct--ttgttttcaggaaT-----CACACATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1116436 193 -  4500979 TGAGATTCAAAGTTCACATAAACAAGCGG-----CACGCATTAAAAAGCGTgcaaatgtttattttctccggaaatttaaaatttgctCAGCAG-----CTCGTAG---------ATGTAACCGTTTCTGACGGACTACAATTAATCGTCattatgttttctgtttc-------------tatctgcaagt-tg----ta---tttttct--ttatttttagaaat-----cacacatca
i caeRem4.Crem_Contig0  I 497 C 0
s caeSp111.Scaffold630  6092489 193 + 20921866 TAAGTTTCAAAGTTCACATAAACAAAAGCTAC--CGC-ATTGAAAAAACGTGcaaatgtttattttctccGG-------AAATTTGCTCAGCAG-----GTCACAT---------ATGTAACCGTTTCT----GACTACACTAAATCGTCATTATATTTTCTTGC---------------CAACTGCAAAT-TAATATCA---TTTTTAcgtttatttttagaaatgaaacaacacatca
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2405443 188 +  4147112 CGAGTTTCAAAGTTCACATAAACAAGAGCTCC--CAC-AATTGAAAAGCGTGCAAATGTTTATTTTCTCCGG-------AAATTTGTTCAGCAG-----GTCACAA---------ATGTAACCGTTTCT----GACTACTCTAAATCGTcattatattttctttttc-----------tacatctgcaatt-tg----ta---tttttatggttatttttagaaat-----cacacatca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320732 1456 +   375229 I

a score=97902.000000
s ce10.chrX             4136843 138 + 17718866 TTTCAATATCCATTTTCTCC---CTCATTTTCTTCTCTCC------------CCAC-AATAAATCAAATATTCAGAAAGTGTGTCTCCGCACAATGAGCAAAAGCGACCCGCACCTCGACATCCCACATCTACTAGTCAGCCAGGACGAAGGTA
s cb4.chrX              9241388 135 + 21540570 TAT--ATAT---attttcct-----ctctttctttttctc--------aaagactcaaac-aataaaatattcagaaagtgtcCCTCCGCACAATGAGCAAAAGCGACCCACATCTGGACATTCCACATCTTCTCGTCAGCCAGGATGAAggta
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0  1116629 125 -  4500979 ------------atttttct-----ttttttctattctt----------aaGACTC-AAc-aataaaatattcagaaagtGTCTCTCCGCACAATGAGCAAAAGTGACCCGCACCTCGACATTCCACATTTTCTCGTCAGTCAGGATGAAGGTA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6092682 135 + 20921866 ------------ttttttgttgctcTTTTTCCCACTACTC-----TCTAACGActc-aat-aataaaatattcagaaaatttctcTTCGCACAATGAGCAAAAGCGACCCGCATCTCGACATTCCGCATCTTCTCGTCAGTCAGGATGAAGGTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2405631 137 +  4147112 ------------ttttctct---ccgtttttctactactcttttttctcaatactc-aac-aatgaaatattcagaaagtGTCTCTCCGCACAATGAGCAAGAGCGACCCACATCTCGACATTCCACATCTGCTCGTCAGCCAGGATGAAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  322188 140 +   375229 tttctttttccactctctct-----ctctgtctcctcctc-----ctcctggGCTA-A---GATACATTATTCAGAAAGTGTCTCTGCGCACCATGAGCAAGAGCGACCCACATCTGGACATTCCACACCTACTTGTTAGCCAGGACGaaggtg
i caeJap4.Scaffold17084 I 1456 C 0

a score=-7661.000000
s ce10.chrX             4136981 25 + 17718866 GGTACACAGTTCGAAAACTACAAGC------
s caeRem4.Crem_Contig0  1116759 25 -  4500979 TTTATCTCTTCCACCCTCTTTACTC------
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6092817 14 + 20921866 -----------catcatcttttctt------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2405768 13 +  4147112 -----------CA-AAACATATCTC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  322328 17 +   375229 --------------agtttttaattgttatT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9241523 30 + 21540570 I

a score=50674.000000
s ce10.chrX             4137006 257 + 17718866 TTTCCCATACTTG--------------TTGATGACCTTCGC---CGCACTTTTCATAAT--TTTTTGTTATTGTCGCCCTGTGCGTGTGTGTGTGTGTGTGCCACGGCCGT---CTGCACATGG-TCGCCT--TG---TTTTTTGTCCTCCACCCT----CT--ACACGCCCC-GTTGTTTTTTGTCAAAACAGAACCTCGAGGTC--TGGCTCTTTTCACTC--CTTCATACTGATTTTC-------GCA-TCAATTCACGATTCATCCGATTTGAAATCGATTCCAATCGGGAATTTTAAGA
s cb4.chrX              9241553 218 + 21540570 ATCATAGTAGTTG--------------TTGATGACCTCTCG---CGCACTTTCCAtagt--tttttgttattgtcC---------------------------CAGAGTGG----TGCACAAGGCCCGCct--tgtgtttttttgttctctccaCCCTCTCT--CTCCGCCCC--TTATTTTGTGTCAAAACAGAACCTCGAGGC---T---CTTTTTCACTCTGTCCCCTACCGATTTTCAACAACAACATACAACTCACAATAGA---Gatcgaatttcga---------------------
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0  1116784 211 -  4500979 ATTCCCATATATG--------------TTGATGACCTCCTGGGTCGcacttttcataa---attttgttGTTGTCC--------------------------ACTGTCTGTCGCCTGCACAAGGCCCGCCT--TG---TTTTTTGTCCTCTCCACC----CT--CTCCGCCCC--T--ATTTGTGTCAAAACAGAACCTCGAGGC---TAGCTCTTTTCACTCTGCCCCCTACCGATTTTC-------ACA-ACAACTTTCAATCGA---GATCGATTaccaa---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6092831 231 + 20921866 tttcccttatTTG--------------TTGCTGACTCTGTGT--CGCACTTtccataaa-ttttttgttattgttA-------------------------CTTCGGCCGT---CTGCACATGGGTcgtct--tg---ttttttgtcCTCTCCACC----Ct--ctccgcccc--t--ttctttGTCAAAACAGAACCTCGAGGCCAGCAGCTCTTTTCACTCTGCCCCTCACCAATTTTC-------ACA-ACAACTCTCAATCCA---GATCAAATATCGATTTCGATC--CATTACTATGA
i caeSp111.Scaffold630  C 0 I 93
s caePb3.Scfld02_0      2405781 236 +  4147112 TTTTCCATATTTG--------------TTGATGACTACGGGG--CGTACTTTCCATGAA--ATTGTGTTATTGTCCGTCT---------------------CTTCGGTCGT--CCTGCACAAGGCCCGCCTTGTG---TTTTTTGTCCTCTCCACC----CTCACCCCGCCCCtat--ttttgtgtcaaaacAGAACCTCGAGGC---CAGCTCTTTTCACTCTGCCCCTCACCAATTTTC-------ACA-ACAACTCTTAATCAC---gatcaaatttcaatattgatt----ttgatcaGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  322345 169 +   375229 CTTCGCATTGTTGactgttttctgtttttggtGCCCATTCC---CGCActttccataattttttttgttattgccA----------ACTCGTGGTGCGGCCAGCCGGCCGG-CCCTGCCTG----Ccgtct--tg--tttttttgttcttttttct----tt--ctgcctttc-at--ttttttg---------------------------ttttttgtgtc---------cCGA--------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-14954.000000
s ce10.chrX             4137263 86 + 17718866 TTTCAAATAAACTTCATTCCAAA-TTC---ACCTCACGAACTGAAATTCAAATTCCACTTT--GCTTT--CGACCACACTTTTTTTG--AT-CAGAA-------
s cb4.chrX              9241771 89 + 21540570 tttttttc--atttcgatcCGA--TTTCTATTAAATCAATCTGAATCTCtaatctcgattttcgtctt--cctacgaactttttttt--ctgctgaa-------
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1116995 76 -  4500979 tttcat-----tttcgatcCGA--TTC---TTCattcaaaccaatttttgaatactacCTTTTGCATC--------AACCATTTTTG--CT-CTCAC-------
i caeRem4.Crem_Contig0  C 0 I 46
s caePb3.Scfld02_0      2406017 83 +  4147112 -----------TCTCGTGCCAAACTTC---TTAATTTtacttcaaaattcatttctatttttcgtcTTCGCTttttgactactttttgactATTCAA-------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17084  322514 37 +   375229 ------------------------------------------------CCATTTCCACTTCCCGGATT----------------TTG--ct-ctgaattttcga
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6093062 93 + 20921866 I

a score=168579.000000
s ce10.chrX             4137349 232 + 17718866 GCTGAAATT-----------------------CGCTGAAAAATGGACCCAAAACTTCACAAATTTTTGATGGCCAATCATTTTTCGAAACATCAAGAGTA---TTCTGGATGTAA-------TCTCCGATAAATA-TCAGATCCCTGTTCATCC------CCTTATTTACCATTTTCCAGCTCATCCATCTCTCAATAAGATCATGTCTAACTTGCAACATGTGCATGAAGGACTCAAGACTCCGGTCTCCTCACATCCAAATCTTCAGGTA
s cb4.chrX              9241900 229 + 21540570 gctgaaa--------------------aaaa-cattgaaaaatggatCCGAAACTTCACAAGTTTTTGATGGCCAATCACTTTTCGAAACATCAAGATTA---TTCTGGATGTAA-------ATCTCGATAAAGCGCTCCA-----TTTTAgac------ccaaaatttc-atttttcagcacacCCATCACTCAACAAGATTATGTCCAACTTGCAGCACGTGCATGAAGGACTCAAGACACCAATGTCTTCTCAGCCAAATCTTCAGGTA
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0  1117117 243 -  4500979 gCTGGTATCTttatc------------aaaa-agctgaaaaatggacCCGAAACTTCACAAACTTTTGATGGCCAACCACCTTTCGAAACATCATGAATA---TTCTGGATGTAA-------TCTCCGATAAAACATCCCACCAGGTTTCAGAC------TGACATTTGCAATGTTTCAGCTCATCCGTCACTTAACAAGATCATGTCCAACTTGCAACACGTCCACGAGGGACTCAAGACACCTGTGTCCTCGCATCCTAATCTCCAGGTA
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold630  6093155 253 + 20921866 tctgaaattccgatTGCACAGATAccaaaaa-agctgaaaaatggacCCAAAGCTCCACAAATTTCTGATGGCCAATCACTTTTCGAAACACCAAGAGTA---TTCTGGATGTAA-------TCCTCTAT--------TAACCCATTCCGTGTCCCCCAAAAAccgtttcaatttttcagctcaTCCATCGCTCAACAAGATTATGTCCAACTTGCAACATGTTCATGAAGGACTCAAGACTCCAGTGTCATCTCACCCAAATCTTCAGGTA
i caeSp111.Scaffold630  I 93 C 0
s caePb3.Scfld02_0      2406116 255 +  4147112 tctgaaattccgattgctcagatttcaaaaacagctgaaaaatggatccGAAACTTCACAAGTTTTTGATGGCCAatcacttttcgaaacatcAAGATTA---TTCTGGATGTAA-------TCTTCGATAACTC-TCCAACTTATTTTCAGCC------GAACAATGCCAAGTTTTCAGCTCATCCATCGCTCAACAAGATTATGTCTAACTTGCAACACGTCCACGAAGGACTCAGAACTCCAGTGTCGTCTCATCCAAATCTTCAGGTA
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17084  322551 242 +   375229 atttgaaTC-----------------------ATTGGGAAAATGGACCCGAAACTTCGCAAACTTTTAATGGCAAATCAATTTTCAAAGCACCAAGACCAGGTTTCCGGATGTAAATAAAGTTCACCGGCATAATGCGAGTGTAATTTGCATGC------TTTGAGTGTTTA-TTTTCAGCTCATCCATCACTCAACAAGATCATGTCGAATTTGCAACACGTGCACGAAGGTCTCAAGACACCCGTTTCTTCATCGCCAAATTTGCAGGTA
i caeJap4.Scaffold17084 C 0 I 624

a score=23323.000000
s ce10.chrX             4137581 143 + 17718866 ATTTGAA--CTTTCTCAAA-----TTTTCTAGAA--CAA--AAATAATCACG-------CGTGATTGCGAAATAATGGAAAGAAAAATTATTC--------TTGTTGACACGTTCGCCTTTTAAGTAAGACTAAAGTTCC-TCCGTTAAATTTTTAATTTTTTAGTTT--CC
s cb4.chrX              9242129 143 + 21540570 AGTTGagagtttttttgaagtcaTTGTTCTAGAAATACAT-AAATCAT-ATGACTGAAAAGAAATTACGAAATACT-TAATGACATTCGTTTTTGTCGTTCTTGTTGACACCTTT----------TAAAGCGAAAGTTCCGGGTGTTTGCGTTCTC----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117360 123 -  4500979 ACCCGAG------------------TTTCTAGAA--CAAA-GAGTCAT-ATGTTC----AATGATTACGAAATTCT-TAAAGACActcgtttt--------ttgttgactcCTTT----------TGGAGAGAAAGTTCCGTGTGTCtgctttctg--ttttttgttccc--
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold630  6093408 121 + 20921866 ATTTGAG-----------------TCTTCTAGAA--GAAACAAGTCAT-ATG-TT----AGAGATTACGAAATTCT-TAAAGACACTCG-TTT--------TTGTTGACACCTTT----------CCAGGCTCTAGTTCCGGGTGTCCCTTTTTTG--TTGTCAGTCC----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406371 121 +  4147112 ACCTGag-----------------ttttctagaa--caa--aagTCAT-ATGTTT----AGCGATTACGAAATACT-TAAAGACACTCgtttt--------ttgttgacaccttt----------tttggagaaagttccgtgtgtctgctttttg--ttttttgttc----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  322793 624 +   375229 I

a score=-2201.000000
s ce10.chrX             4137724 23 + 17718866 TAATAATCTTCGGAGC--TTAATTT--
s cb4.chrX              9242272 19 + 21540570 ----CAGA--CAGAAC--tcaatcttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6093529 23 + 20921866 CAATCATC--CAAAAAAGTTAGTCT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406492 22 +  4147112 gcatagac--caaaaaa-ccaattt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  322793 624 +   375229 I
e caeRem4.Crem_Contig0  1117483 21 -  4500979 I

a score=4429.000000
s ce10.chrX             4137747 21 + 17718866 --TTGAACTTTTATTGGAAAAAA
s cb4.chrX              9242291 21 + 21540570 --ttgaattttcagtcacaATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117504 21 -  4500979 --ttgaatttttttccataaaaa
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold630  6093552 23 + 20921866 TCATGAATTCTCGATGAATTGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406514 23 +  4147112 tcatgaattttcactcAATCAAA
i caePb3.Scfld02_0      C 0 I 59
e caeJap4.Scaffold17084  322793 624 +   375229 I

a score=-2449.000000
s ce10.chrX             4137768 37 + 17718866 -ATTGTGGCAAAAATTC-----------------TAAAACTTGATTC-----TGAATTAC
s cb4.chrX              9242312 38 + 21540570 AATTGCGACTGAAGATC-----------------GAGAGTTTAAATT-----CGAAGAAC
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0  1117525 41 -  4500979 a-----gaCTGAAGATT--------------ATAGAACATTTAAGTTGTGAACAGAGAGC
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold630  6093575 47 + 20921866 -------ACTGAAgattagaaaaaacttcgaaCAGAGAACATAGATT-----Tgaggaa-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2406537 59 +  4147112 I
e caeJap4.Scaffold17084  322793 624 +   375229 I

a score=0.000000
s ce10.chrX             4137805 4 + 17718866 TTTG
e caePb3.Scfld02_0      2406537 59 +  4147112 I
e caeJap4.Scaffold17084  322793 624 +   375229 I
e cb4.chrX              9242350 25 + 21540570 I
e caeSp111.Scaffold630  6093622 0 + 20921866 C
e caeRem4.Crem_Contig0  1117566 18 -  4500979 I

a score=-265.000000
s ce10.chrX             4137809 1 + 17718866 C
s cb4.chrX              9242375 1 + 21540570 c
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0  1117584 1 -  4500979 a
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold630  6093622 1 + 20921866 a
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2406537 59 +  4147112 I
e caeJap4.Scaffold17084  322793 624 +   375229 I

a score=4480.000000
s ce10.chrX             4137810 16 + 17718866 AATCAAATT------TTTTGTG
s cb4.chrX              9242376 14 + 21540570 aaacaaa--------tctCGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117585 22 -  4500979 aaacagactcAAACGTCTCGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6093623 22 + 20921866 aaacaaactcaATGGGTTCGTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406596 22 +  4147112 AAACAAACTCATTCAATACGTA
i caePb3.Scfld02_0      I 59 C 0
e caeJap4.Scaffold17084  322793 624 +   375229 I

a score=61177.000000
s ce10.chrX             4137826 55 + 17718866 ATTTTCAGTCGCTCCGCCGAGAGAACGAGTTCCAAGACAAGAACGTCAGGTCAGT
s cb4.chrX              9242390 55 + 21540570 CTTTGCAGGCGCTCCGTCGCGAGAACGAGTTCCAGGACAAGAATGTCAGGTTAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117607 55 -  4500979 CTTTGCAGGCGCTCCGTCGTGAGAACGAGTTCCAGGATAAGAACGTCAGGTCAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6093645 55 + 20921866 CTTTGCAGGCGCTCCGTCGAGAAAACGAGTTCCAAGACAAGAACGTCAGGTTAGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406618 55 +  4147112 CTTTGCAGGCGCTCCGTCGCGAGAACGAGTTCCAGGATAAGAACGTCAGGTCAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  323417 55 +   375229 ATTTTCAGGCATTGCGTCGTGAGCACGAGTTCCACGATAGAAACGTCAGGTcagt
i caeJap4.Scaffold17084 I 624 I 60

a score=16921.000000
s ce10.chrX             4137881 57 + 17718866 C----AATTAATCAAAAAC---TGGGCCCCCATTCCCTTTAGTTCCTCAATCTGAGTCTCCCCA
s cb4.chrX              9242445 47 + 21540570 CTCTTCATTTATC--AAATATATGAGACCC--------CTAGTTCCTCAAACC-------CCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117662 48 -  4500979 C----AATTTATC--AAAC---TGGGCCCC------GTTTAGTTCCTCAATCCTAGTCT-TCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6093700 48 + 20921866 C----AATATATC--AAAC---TGGGCCCC------TTTTAGTTCCTCAATCTTAGCCT-CCCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406673 48 +  4147112 C----AATCTATC--AAAC---TGGGTCCC------ACTTAGTTCCTCAATCTTAGTCT-CCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323472 60 +   375229 I

a score=72648.000000
s ce10.chrX             4137938 150 + 17718866 TGAATGTGTTTATCGGAAAT------ATGGTGACGAA---GGCA----------TAGGAAAAT--AGCT----TACGCA-----------GACGCCGCGACGAAAACTGAGTTCAAACAATGCTTTTTCT--------GGGGCGGGCAAG-------------------AAAATAGGGAGAAACCCTCTAGGTCTGAATTGGGTACAAATTCA
s cb4.chrX              9242492 179 + 21540570 TGAATGTGTTTATCGGAAGTTTGTGAGT-GTGACGCA---GCCATCC---TAGATTAGGAAAT--AGTTATAGTGCGCA-----------GACATTGCAAC-AAAACTGAGTTCAAAcaatgcttttttttttgagagaaggCGGGGGAAACTACGCTCTCG----CACTTTATTGAAAAGGAT-------GACTAAATTGGGTGCA--TTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1117710 152 -  4500979 TGAATGTGTTTATCGGAAAT------GT-GTGACGCA---GGCA------CAGATGAAGAAAT--AGTT----TACGCA-----------GACATTGCAGCAAAAACTGAGTTCAAACAATGCtttttttt-------GGGGCGGGAGGA--------CTCG----CACTGAGTAGAAAAGGAT-------TGCCAAGTTGGGTACA--TTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6093748 159 + 20921866 TGAATGTGTTTATCGGAAAT------GT-GTGACGCA--GGGGA------CACATAAAAAGAT--AGTT----TACGCA-----------GACATTGCAGCGAAAATAGAGTTCAAACAATGCTTCTTTCT-------GGGGCGGGAAAC--------CTCGTACTCAACGAATAGAAAAGGAT-------GCCCAAATTGGGTGCAAGTTCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406721 161 +  4147112 TGAATGTGTTTATCGGAAAT------GT-GTGACGCGACGGGGA------CATATGAAGAGAT--AGTT----AGCGCA-----------GACATTGCAACAAAAATAGAGTTCAAACAATGCTTTTTCTG-------GGGGCGGGAGAC--------CTCATACGCACTGAATAGAAAAGGAT-------TGCCAAGTTGGGTGCAAGTTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  323532 164 +   375229 TGAATCTGTTT--------T------CT-TTGACGCA---GGCAGCCAGAGAGACTGGGGAATAGAGTC----TCCGAAAAGGCTAGCTGGGCATGGCGTTGAAAACTGAGTTCAAACCATGCTTTTCGC--------GAGAAGGGGAAT--------CCCG----CACTGAGAGAAACTTTGC-------GACTTTCCTGGGTacattttca
i caeJap4.Scaffold17084 I 60 I 1251

a score=-8021.000000
s ce10.chrX             4138088 53 + 17718866 AATACTTTGGCGCCTTCACTATTTTTCTCAGTACTCTTT-----CTTCTTTTTTT--TCC-
s cb4.chrX              9242671 36 + 21540570 GATAc-------tctacaattttttcatta---------------ttcttttttt--tcc-
i cb4.chrX              C 0 I 1116
s caeRem4.Crem_Contig0  1117862 43 -  4500979 GAAACGT-----TTTACACTCTTTTTCTTGGcgg----------tttcttttctt--ctc-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6093907 32 + 20921866 AGAAT----------ACAATCAGtgtc-----------------tttcattttct--atct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2406882 51 +  4147112 AGAAA----------GCagttcatttctttttatcaTGCCtagatttcgttttttgaattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323696 1251 +   375229 I

a score=-6243.000000
s ce10.chrX             4138141 48 + 17718866 AATTATTTT-----CAAATTAGCC--------------TGTACTTTTTGTTGTGCTCTACTGGCTCT
s caeRem4.Crem_Contig0  1117906 11 -  4500979 -----------------------------------------aa-atcagtttt--------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6093939 67 + 20921866 gATTGTTTTTGTGTCAAGTTCGTTGCATAGAATGTTCatgcactttttgttttgctcGAAGGATTCT
i caeSp111.Scaffold630  C 0 I 112
s caePb3.Scfld02_0      2406933 52 +  4147112 aattcttct---------tccgTTCCAAAGTGT-----TGCAC-TTTAGTCTCAATCGCCGGGCTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9242707 1116 + 21540570 I

a score=-1229.000000
s ce10.chrX             4138189 38 + 17718866 -------TCTAGTATTTAAAGGGTGCGAATTGCTCTGTTTTTGCG
s caeRem4.Crem_Contig0  1117917 40 -  4500979 tctaaaacatcAGAATTAGATGCTTT---TTCATTTGTGTTTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2406985 42 +  4147112 -ACAATAAGTTATAAT--GATCTTTTGAATTACTCTGTTTTTGAG
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9242707 1116 + 21540570 I
e caeSp111.Scaffold630  6094006 112 + 20921866 I

a score=-335.000000
s ce10.chrX             4138227 73 + 17718866 AATATTCTCTGTCCCATAAATCCAAATAGGCCTATTACACTATTGTATTGTACTGTAGAGCTCGGTCATCCAA
s caeRem4.Crem_Contig0  1117957 52 -  4500979 ------------CCaagagatttaaaaaaaagtagtgCGCAAC--AAATGCCCTTTAGATC-------CCCAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2407027 47 +  4147112 I
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9242707 1116 + 21540570 I
e caeSp111.Scaffold630  6094006 112 + 20921866 I

a score=-1919.000000
s ce10.chrX             4138300 35 + 17718866 -AATAATTAAAAGTGAATTGCC---CTGTTTTGGAGTAG
s caeRem4.Crem_Contig0  1118009 22 -  4500979 CAGTATTCCTGtcaacaaattc-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2407074 38 +  4147112 -GGTAATTGAAAGTGCAAACCCTGAtagttttgaatcag
i caePb3.Scfld02_0      I 47 C 0
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9242707 1116 + 21540570 I
e caeSp111.Scaffold630  6094006 112 + 20921866 I

a score=-36907.000000
s ce10.chrX             4138335 278 + 17718866 AAAGT---------ATTGTGTTTTTCAATAACAAGACAACTGTAAAGATGACGGTTTCTAAACATTTGGGACTTTTATAACAGCTGTACCCAAAAATATTTTCGTAGAGTTGAACTCATCAGGTTAGAAAACATTTTAATACTGTTGTACTAATA--TAAAAAAAGTAGTATTGAACCTGATACCATTCTATTTGAGGGGTTATCTTTTATTTCTTGATTCATTTG--ATTTTCAAACATCTTAACTAATGCATATCCTAATCCATATTAGTCATCGGGTTACGCA-ATCAT--------------
s caeRem4.Crem_Contig0  1118031 197 -  4500979 aaattttaattttatttggGTAGTT--ACA--AGTCCAGCCTGAA-------GTCTAGACAACATCCAAATCTCTGGTCTCATTT-----------------------------------------------ATTCAAGTATTACTGTATCTGCAACCAGGAAGGATCT---------------------------------------GATTT-----CCCGTTAGCTAttttc---taccgtaa----tccaaaTCAGAGCACGTTTTAGGAATTAGCATTCAAAGATAATCCTGTCGGAGATAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  6094118 146 + 20921866 AGAGTGCAGTC---TTTGTTCACATCAAGA--ATTACATTTCCTA-------GCTGTCTCAA-TTTCAGTGTTGTCGTCAAAACC------------------------------------------------------------------------CGGAAGAAGTCTTATGAGTCATG-------------------------TATGACTT----ATCCGGAAG--AGCTTC---TTCTAGAA------CCAATCATAA----------------------AGAGATAATC-------------
i caeSp111.Scaffold630  I 112 C 0
s caePb3.Scfld02_0      2407112 176 +  4147112 aaa-------------tGAGCATTTCGAAA--GGTTCACCTCTGA-------TCCTTCTCGATTTTCAAATCTGTTGACAGACCCGGAAC---AGAT-----------GTTGAATT----------------AGTCATCGAATACGATA---ATCTTCCGAGACACTCATTCTGGAactg----------------------------gattt----gaaaaaaag--ataatc---caCTGGAAAAATATCCAATCTCA-------------------------AGATTATC-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9242707 1116 + 21540570 I

a score=75298.000000
s ce10.chrX             4138613 716 + 17718866  
s cb4.chrX              9243823 783 + 21540570  
i cb4.chrX              I 1116 C 0
s caeRem4.Crem_Contig0  1118235 679 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  6094264 728 + 20921866  
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2407288 772 +  4147112  
i caePb3.Scfld02_0      C 0 I 228
e caeJap4.Scaffold17084  323696 1251 +   375229 I

a score=-26363.000000
s ce10.chrX             4139329 132 + 17718866 TAATGGGTGTTGTTCT----------AGATAGACAA--ATCAAAAT-TTTCAGTAAAA-----------------GTCCCGT---ATGTTTGAAA-------------------------------------------------------TGTCAATACTTAAAATATGAGTAGGCTATAAAACTCAACGGTACCTTTTTTTGGATCGACGAATTCCAAA-------------------
s cb4.chrX              9244606 226 + 21540570 TTTTGGGTGATAATTCTGGAAATGACGAAATGATAGTTGTGtaaat-tttggaagaaaaaaaattggaaattaattttctgCTGGAAATTAAGAAATAACAAACGTTTGGAGAATGTCCAAATAAAGTCatgattcaaatttcttcaaaaagtcaattatttcaaaaataattgtttgaaaaac-------taaCCTTCTTCCGATC-----ATAACAAACTGATCTATCAATTTCAAA
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0  1118914  92 -  4500979 TTGTTGTTGGCACTTGTAACAATGGGAAAACGAGAG--ATagaaat-tgtagaaaaaa---------------------------aaattgggaa-----------------------caGGTGA--------------------------------------------AACTGTT------------------------------------GTAACAAG--------------GCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6094999  54 + 20921866 ---------------------AGAGAGGAATTGCAG--CTAAGTATCTTTAGAGAAGA-----------------TCCctgc---aaaacaaaaa-----------------------ga-----------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold630  I 7 C 0
e caePb3.Scfld02_0      2408060 228 +  4147112 I
e caeJap4.Scaffold17084  323696 1251 +   375229 I

a score=120.000000
s ce10.chrX             4139461 7 + 17718866 AAAATGG
s caeRem4.Crem_Contig0  1119006 6 -  4500979 TAAACG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6095053 7 + 20921866 gaaatgg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2408060 228 +  4147112 I
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9244832 22 + 21540570 I

a score=-450.000000
s ce10.chrX             4139468 23 + 17718866 TAAATCATAGATTTTTCCAAACG
s caeRem4.Crem_Contig0  1119012  7 -  4500979 ------------TTTTGCA----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2408060 228 +  4147112 I
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e cb4.chrX              9244832 22 + 21540570 I
e caeSp111.Scaffold630  6095060  0 + 20921866 C

a score=415.000000
s ce10.chrX             4139491 17 + 17718866 TCAAAAAAGATTTAAAT
s cb4.chrX              9244854 17 + 21540570 tggaaaaaaatcagaaa
i cb4.chrX              I 22 C 0
e caePb3.Scfld02_0      2408060 228 +  4147112 I
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e caeSp111.Scaffold630  6095060  0 + 20921866 C
e caeRem4.Crem_Contig0  1119019  0 -  4500979 C

a score=-12968.000000
s ce10.chrX             4139508  74 + 17718866 --CCTTCATATGATATTTGATC-------ATT----GTGGTTCTTTTTTTTTCCTTG--------------ACTTCATAGTCGTCAGTAATCCCTCTATCA-----------
s cb4.chrX              9244871 105 + 21540570 cctccatatccaattttcattttcagctaattttc-ctAGATCCTTGTTTAGACAAGCAATAGCGgaccaaacttcaaaa------acatcCCCTGCAACAAACTTCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1119019  31 -  4500979 -----------------------------ATT-----TAGCCCCT--------------------------ACTCCAA----------ATCCTTAGCAAAA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2408288  93 +  4147112 --CCATTATATAATATAAATTGTTGGA--ACTTCAGctgtttcttcgttttttttgaaatctgttgACAATTTTGCAAAGTT----TTAGCCCCTTTAACA-----------
i caePb3.Scfld02_0      I 228 I 17
e caeJap4.Scaffold17084  323696 1251 +   375229 I
e caeSp111.Scaffold630  6095060   0 + 20921866 C

a score=6287.000000
s ce10.chrX             4139582 37 + 17718866 ----------------------TTTCGGAGTCTATAGTTTGGAATATCAGGGTCAAGCG
s cb4.chrX              9244976 43 + 21540570 CTAAGTCCCTCTCGAGCTTAGATTTCCG----------------TAGCGAGGTCAAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1119050 25 -  4500979 ------------------TAAGTTTCCC----------------TGTCGAGGTCAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6095060 21 + 20921866 ----------------------tttCGG----------------TAGCGAGGTCAAGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2408398 21 +  4147112 ----------------------TTTCGG----------------TGGCGGGGTCAAGAG
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold17084  323696 1251 +   375229 I

a score=136220.000000
s ce10.chrX             4139619 420 + 17718866  
s cb4.chrX              9245019 460 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1119075 418 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6095081 436 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2408419 419 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  324947 413 +   375229  
i caeJap4.Scaffold17084 I 1251 I 991

a score=46807.000000
s ce10.chrX             4140039 322 + 17718866 -----------------ATATCATATTTTTGCATC-AGAATGCAGAAAAATA--------TGAAAA-----ATTGTGTTAAAGATCG-----GCCGG-CCCAATGCATAGAACAATGAAA--TACCTG----GGTAAATAA---------CAA---TCCG--TTCTGGAACCGA-----AAACTAATGTGTGGCCCCCGGGTGTGTTGTTTTCAATCTCTTCCCTGCA-GTATTC--AGCTTCCTGGTT--------TGAATCCTTCACTGCTTTCTCTTGCAGGTCGTGTGTATGTGTG-------------TGTTTTTGCCAAAA--AAAAAAGTCATCACATATTTTC---------TGAGTCAATAGAAACA--CCTCACACATTCCTTTTTAGTACTACGTGTGTTTGAGTTGTTT-----------------
s cb4.chrX              9245479 340 + 21540570 AAAGACCATGCAGAACAAGATCAT-ATTCTGCATT-GGAATGCAG---ATTGATGGGGTTAGGGAGGAGTAGGAATGC--AAAAACGGCAGCACCGGACCAAACACATAGAACAATGAAGTATACCGGTGGCGGTAAACAAAGTGAGATTCGAGACGGGGTGTGCTGGAACTGATGTTTGGCCTAAATTGCTGCTGAC-GACGGCTTGTTTTTCCTCATGTTAGAGCC-G-------AGCTTCCCGGTTTTTACTTCCAGAA---AGCCAATGTTTTgatgtt--------------gtt-------------ttttgtttcgaaaa--acgaaCGG-ATTGCATGTTTAGTCTTGT------------------TGGTTTTAGTTATCG------------------------------CCAAGTTGGAAACAGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1119493 363 -  4500979 AAAGACCATGCAGAACAAGATCAT--TTTTGCATCAGGAATGCAGGAAACtgattgagagagaaag-----agaatgt---aAAACG-----ACCGGACCAAACACATAGAACAATGAAT--TACCGG----GGTAAACAAGACGAGATCCAA---TGAGT-TGCTGGAACTGATGTTTGTCCCAATTTGCTGCT----GACgggttgtttttcttt-ttttcgtgcT-GTGTGC--AGCTTCCTGGTT-----GGCCAGAGTCTTCCTAGTTTCTTCTAGTA--------------Gtg-------------ttttgattcgaaaaatatgaACGT--TTGTATGTTTTGTTTAGTAAAAAAGTCAATAGAAACAGGTTTCAgtcttcagttttttattccaTTC---TTTGCAGTGTTCCATGT-----GCTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6095517 336 + 20921866 AAAAACCATGCAGAACAAgatcgt-tttttgaatc-gaaatgcaa--aaataatttag--tGAGAG-----AGAATGT--GGAAATG-----GCCGGACCAAACCCATAGAACAAGTAGA-ATATAGG--ATGGTAAAC-ACCCGAGATCCAT---CGAG--TACTGGAACTGATGTTTGGCCCGAATTGCTGCc--------gcttgttttcttttt----cgtgcC-GTGCGTAAAGCTTCCTGGTT-----GGCCAGAGTCTTCTTAGTTTCGTCTAGTa--------------gtg-------------ttttcatttcaaaa-tacggaggt--tgtttttttctcgttttt---agAGTCAATAGAAACAGTTTTCACTCTTTAGAC-------CCATTCGTACTCCCAGTGCTC-----------------
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0      2408838 363 +  4147112 AAAGACCATTTAGAACAAGATCAT-TTTCTACATT-GGAAtgcaa--aaataattgagaatGAGAG-----AGAATG---GAAAACG-----ACCGGACCAAACGCATAGAACAATGAGA-ATACCGG--ATCGTAAACAAAAAGAGATCCTA---CGGG--TGCTGGAACTGATGTTTGGCCCAATTTGCTGCc--------ggttgtttttctttttctccgctCCAGTATGTAAAGCTTCCTGGTT-----GGCCAGAGTCTTCCTACTTTTTCCTAGTA--------------GTATTTTGactacattttttgatttcaaaa-tgcgGACGT--Tcgcatgttttctttttg---agagtCAATAGAAACAGTTCTCACTTTTTAGACCTTCACTCCATTCGTACTTGAGGTGCTT-----------------
i caePb3.Scfld02_0      C 0 I 212
e caeJap4.Scaffold17084  325360 991 +   375229 I

a score=702.000000
s ce10.chrX             4140361 5 + 17718866 TCATT
s caeRem4.Crem_Contig0  1119856 5 -  4500979 TCATT
i caeRem4.Crem_Contig0  C 0 I 103
s caeSp111.Scaffold630  6095862 5 + 20921866 ttttt
i caeSp111.Scaffold630  I 9 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9245819 0 + 21540570 C

a score=-2197.000000
s ce10.chrX             4140366 44 + 17718866 --TTACTTTCCGATCGAGAGAATTTCAACT-TTGGTACACTTACTGT
s cb4.chrX              9245819 37 + 21540570 TTAAAGTCTTTCA----------TTTGATCATTTGTGTGCTCCATGT
i cb4.chrX              C 0 I 31
s caeSp111.Scaffold630  6095867 20 + 20921866 tttctgtttctga----------tttaact-----------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e caeRem4.Crem_Contig0  1119861 103 -  4500979 I

a score=-1229.000000
s ce10.chrX             4140410 44 + 17718866 TAGAATGACTATACAAAATGCTAAACTTTGACGTTTCACAAGAA
s caeSp111.Scaffold630  6095887  6 + 20921866 ------------------------atcttg--------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9245856 31 + 21540570 I
e caeRem4.Crem_Contig0  1119861 103 -  4500979 I

a score=-3332.000000
s ce10.chrX             4140454 91 + 17718866 GTTTTTTTCCTTA--ATTTTTAATAATCC---ATCAAAGTAATTATAAACTTAGTTT-----AAGATAGAGTACGACCTGTCTGAAAATAATTACAAAAAA
s cb4.chrX              9245887 93 + 21540570 GTTTTTCTCACCTATATTTTTAA----TCGgaatcttttcaatttctgacttGCTTTCCATCAACATACAGTACA----gttcaataagatatacaaaaac
i cb4.chrX              I 31 I 330
s caeSp111.Scaffold630  6095893 32 + 20921866 -tttttctctc----gtttttaa----CC---CCCGTAGTAATT---------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e caeRem4.Crem_Contig0  1119861 103 -  4500979 I

a score=-5624.000000
s ce10.chrX             4140545 304 + 17718866 TTCCTACAATTCAAAAGTCGGTAATCACTCAGTTAATGCCACTGTTATGAAAGTCGTCGCATACTTTTGTTTAAACAAATAAATTCCAAcattacagggtttcgaacatgccacagtgctatagttttctcaaaaagtgtttaaaactgagtaataaccactttttgaaactaaataaaaatgtttcaagtaattttttttgtaaagttctactttgatatcttgtcattatgtcgccataaaagtggtttttaacaatttccctactggcgcaactccagttttaaTCGTTAAGACCCTAGTT
s caeSp111.Scaffold630  6095925  78 + 20921866 --------------------------------------CCCCAGTTGT-------------------------AACAAAAA-------------------------------------CTATAGAATCcacaa----------------------------ttttt--------ataaaaacctTT--------------------------------------------------CCACAA------TTTCTAACACTTTTGCAAATTG----------------------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9245980 330 + 21540570 I
e caeRem4.Crem_Contig0  1119861 103 -  4500979 I

a score=-2408.000000
s ce10.chrX             4140849 89 + 17718866 AAAC--TTTCGTCAGAAAATGTAAAATTTCTGTCATTTCTGCCCTTTTTTCTGCA--AAACTTTTTTTGCATTGCGATAAAAGTTTCCATGCA
s caeRem4.Crem_Contig0  1119964 63 -  4500979 AAATTCtctca----------agaaatttcaaaactt--ctccCCTCATTGCACT-----CTCTTTCT-CATGAC-------TTTTCT-----
i caeRem4.Crem_Contig0  I 103 C 0
s caeSp111.Scaffold630  6096003 65 + 20921866 ------TTTCAT-----GATGAGCTATTTCTGCACTTGCTTCCCCTCTTTCCGCCTaaagctcttttt--------------tcttctat---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2409201 212 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9245980 330 + 21540570 I

a score=47.000000
s ce10.chrX             4140938 58 + 17718866 CCTTCACTCCTTTGCTCTTTCTCTTCACGTCTCTTCTTCCCACTTGAAAAA--AAACGTT
s caeRem4.Crem_Contig0  1120027 37 -  4500979 -------------GCTCGTTTTCT---TTTATCTCTTTTCCACTCGAAAAATA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6096068 18 + 20921866 ---------------------------cttttc------CCACTTGAAAAC---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2409413 48 +  4147112 CCATCAGCCTAATGCTCGTTTTAT---CTTTTCTCTCCTCTACTCGAAAAT---------
i caePb3.Scfld02_0      I 212 C 0
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9245980 330 + 21540570 I

a score=133447.000000
s ce10.chrX             4140996 433 + 17718866  
s cb4.chrX              9246310 406 + 21540570  
i cb4.chrX              I 330 I 166
s caeRem4.Crem_Contig0  1120064 429 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6096086 442 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2409461 424 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  325360 991 +   375229 I

a score=3426.000000
s ce10.chrX             4141429 64 + 17718866 ACAACAAATTGAGTTACATG--CAACACTGATA--GTGTGAAAACAACAAAATTGTGTAGTCTAGGGT-------
s caeRem4.Crem_Contig0  1120494 59 -  4500979 --AA-----------AAATAAGCAACAC-GATAGtgtgtgaaa--aagaaaacaaagaagttTTTGGTTCCGGTC
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6096528 51 + 20921866 ---ATAA-------TAAATA--CAACGC-GATA--GTGTGAAA--TTCGAAACAATAGAGTCTAGGGT-------
i caeSp111.Scaffold630  C 0 I 78
s caePb3.Scfld02_0      2409885 46 +  4147112 ---------------aaata--caacaC-GATA--gtgtgaaa--ttcaaaacaatagaATCAGAAGT-------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I

a score=2468.000000
s ce10.chrX             4141493 14 + 17718866 TTTTACATTCCAAT
s caeRem4.Crem_Contig0  1120553 14 -  4500979 TCCTAGATTctagt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2409938 14 +  4147112 TCTTACATTCTAGT
i caePb3.Scfld02_0      I 7 I 253
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I
e caeSp111.Scaffold630  6096579 78 + 20921866 I

a score=162.000000
s ce10.chrX             4141507 23 + 17718866 ATTTTACTACCAAGTTTTGAATT
s caeRem4.Crem_Contig0  1120567 21 -  4500979 tttcaa--acaaaatgttcaatt
i caeRem4.Crem_Contig0  C 0 I 41
e caePb3.Scfld02_0      2409952 253 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I
e caeSp111.Scaffold630  6096579 78 + 20921866 I

a score=0.000000
s ce10.chrX             4141530 590 + 17718866  
e caePb3.Scfld02_0      2409952 253 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I
e caeSp111.Scaffold630  6096579  78 + 20921866 I
e caeRem4.Crem_Contig0  1120588  41 -  4500979 I

a score=182.000000
s ce10.chrX             4142120 2 + 17718866 TA
s caeRem4.Crem_Contig0  1120629 2 -  4500979 ta
i caeRem4.Crem_Contig0  I 41 C 0
e caePb3.Scfld02_0      2409952 253 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I
e caeSp111.Scaffold630  6096579 78 + 20921866 I

a score=-876.000000
s ce10.chrX             4142122 36 + 17718866 TTTTTTCAA---CAACAAATTCCCTTAACTTAATAAGCT---
s caeRem4.Crem_Contig0  1120631 39 -  4500979 ctttttcaaaactaacg---CCTGAAAACTGCCTAATCACCC
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6096657 32 + 20921866 TTCATTCAA---TAACA------GAGAGTTTCATAATCACT-
i caeSp111.Scaffold630  I 78 C 0
e caePb3.Scfld02_0      2409952 253 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I
e cb4.chrX              9246716 166 + 21540570 I

a score=670.000000
s ce10.chrX             4142158 4 + 17718866 AGAA
s cb4.chrX              9246882 4 + 21540570 aaaa
i cb4.chrX              I 166 C 0
s caeRem4.Crem_Contig0  1120672 4 -  4500979 ACAT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6096689 4 + 20921866 AGAA
i caeSp111.Scaffold630  C 0 I 3
e caePb3.Scfld02_0      2409952 253 +  4147112 I
e caeJap4.Scaffold17084  325360 991 +   375229 I

a score=45146.000000
s ce10.chrX             4142162 71 + 17718866 ATGTTTCAACACCTTATTCTTT---CACCTGATCTCTGCAAGAACACCTGACGACGAAATCAGACGCCACGTGA-----
s cb4.chrX              9246886 74 + 21540570 atgtttc-acacCTTATTCTTT---CACCTAATCTTTGTTAGAACATATGACGACGAAATCAGT-GCCACGTGGGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1120676 70 -  4500979 ATGTTTC-ACACCGTACTCCTT---CACCTGATCTTTGCCAGAACATATGACGACGAAATCAGTCGCCACGTGG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6096696 73 + 20921866 ATGTTTC-AgtctgtagtttttttccacCTGATCTCTGCCAGAACATCTGACGACGAAATCAGTCGCCACGTGA-----
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2410205 70 +  4147112 ATGTTTC-AGCCCGTAGTCTTT---CACCTGATCTTTGCCAGAACATCTGACGACGAAATCAGTCGCCACGTGA-----
i caePb3.Scfld02_0      I 253 C 0
e caeJap4.Scaffold17084  325360 991 +   375229 I

a score=98238.000000
s ce10.chrX             4142233 201 + 17718866 GTCTGGCCGCCCGGATGTTTCGTCACAA-TACAAAATGTCACGCGATGTTTCCATTTGCACGCACAC---GTACCTCC--ACGGGAGGTGTGTCCCGACCCGACAAC-----------TTTTTAAGTTG---AGACTGATGTCAGAGAA-GCAAAGAAAAGCGACCACGTGGGCCC----TGTGGGTTCAGCATACACTCAGGATACACTGTGCGCGA--TGTAGG----GG--------------------
s cb4.chrX              9246960 196 + 21540570 GTCTG-CGCCCCGGATGTTTCGTCACAACTACAAAATGTCACGCGATGTTTCCATTTGCACGCACGC-AGCCCGAACCAGCTGGGAG--GTACCC---CCGG----------------TAGTTAT-------AGTC---TGTCAGAGAAGACAGAGAAATGACACCACGTGGGTCCAGTAT-TGGGTTCAGCATACACTCAGGATACACTGTGACTAGCTTGTAGGAAGA----------------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1120746 205 -  4500979 GTCTG-----CCGGATGTTTCGTCACAA-TACAAAAAGTCACGTGGTGTCCCGATTTGCACGCACAC-AAGTAGTACACCCTGGGAGGTGTGTCC---CCGGGCGCCGCcgctttttctcgtttttttg---agTCTGATGTCAGAGAA-ACAGTCGAAATACACCACGTGGGGCT----T-CGGGTTCAGCATACACCCAGGATACACTGTGACCAG--TGTTGG--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6096769 195 + 20921866 GTCTG-----CCGGATGTTTCGTCACAA-TATAGAATGTCACGCGGCGTCTCCATTTGCACGCACATCGGCTACCACC--CCGGGAGGTGCGTCC---CCGGGCGCCCG---------ACTTTCTATTG---AGGTTGCTGTCAGAGAA-ACAAAGACA--CGACCACGTGGGTCC----G-CGGGTTCAGCATACACTCAAAATACACTGTGACCAG--TGTTGG----GC--------------------
i caeSp111.Scaffold630  C 0 I 16
s caePb3.Scfld02_0      2410275 198 +  4147112 GTCTG-----CCGGATGTTTCGTCACAA-TACAGAATGTCACGCGGCGTTTCCATTTGCACGCACAT-AGCTACCACA--CCGGGAGGTGTGTCCCGTCCGGGCGCCCG---------ACTTTCTGTTG---AGGTTGATGTCAGAGAA-ACAAAGACA-GCCACCACGTGGGTCC----T-TGGGTTCAGCATACACTCAGAATACACTGTGTCCAG--TGTTGG----GC--------------------
i caePb3.Scfld02_0      C 0 I 50
s caeJap4.Scaffold17084  326351 207 +   375229 GCCTG-GCttccggacgtttcgaaatat-ttCAAA--GTCACGTGGTGATTCTATTCGCACGTAGCC-AATT--------CTCGTATTTCTGTCT---------GTCTG---------ACTATGAGTCGAATAGCGTGATGTCAGAGAA-GTCAAGACA--AGACCACGTGGGGTT----C-TGGGTTCAGCATACACTCAAGATACACCGTGACCAC--TACAAG----GCGCATTGGAATCAAATTGAAA
i caeJap4.Scaffold17084 I 991 C 0

a score=2714.000000
s ce10.chrX             4142434 11 + 17718866 CGGAAAAGCAG
s cb4.chrX              9247157 11 + 21540570 ACACAAGGGAG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1120951 11 -  4500979 GCACAAGGGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6096980 11 + 20921866 aaaaaagagag
i caeSp111.Scaffold630  I 16 C 0
s caeJap4.Scaffold17084  326558 11 +   375229 CCGGAAAgaag
i caeJap4.Scaffold17084 C 0 I 56
e caePb3.Scfld02_0      2410473 50 +  4147112 I

a score=-4126.000000
s ce10.chrX             4142445 34 + 17718866 TCCGTTG-----------GGAGATAATTTAGGATGACAACTCCGC
s cb4.chrX              9247168 25 + 21540570 TTCGGATATTAA------GGAGGGGCTTTTT--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1120962 44 -  4500979 TCCAGAAATTGAAGCATCGGAGAGGATATGTATAGATGTG-GGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6096991 27 + 20921866 ------------------agagaggataTGAATAGATAGGCCAAC
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2410473 50 +  4147112 I
e caeJap4.Scaffold17084  326569 56 +   375229 I

a score=910.000000
s ce10.chrX             4142479 1 + 17718866 T
s cb4.chrX              9247193 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1121006 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6097018 1 + 20921866 T
i caeSp111.Scaffold630  C 0 I 2
s caeJap4.Scaffold17084  326625 1 +   375229 T
i caeJap4.Scaffold17084 I 56 C 0
e caePb3.Scfld02_0      2410473 50 +  4147112 I

a score=195.000000
s ce10.chrX             4142480 205 + 17718866 CCGATTTGTTCAAATAAACACACATACACACA---CACACG---CTGCGC-------------------CACCGCTCGAAA------ATAGACCAGAAAAGCAG-----AGTCTTTCGAAATTTAGAATTTCTCATCATTTCCA-----------GTATGACG--TCTCATACTTGGAAAGAAAAA---CGAAAAAGAGTCATCG--TTGTGTT--TGTTTTTATTTTCGG---TCTCT---TTTGAAAATTCTTCTTCTACTGTGT
s cb4.chrX              9247194 175 + 21540570 CCGATTTGTTCAAATAAACATAAACA-------------------------------------------CCAGGGCGAAGA------AAAGAGCATC---CAGA-----GCTCTTTCGCAATGCAAtagttctttttcttttttaaaataggAAGAAATGACATCTTTCTT-------------AG---CAAATA------------CTGCGCgcttttt----ccttcat---tttttcacttcaaaCACATCCGAGATAGTCTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1121007 156 -  4500979 CCGATTTGTTCAAATAAACACACATA-------------------------------------------CTGCGCGCGAAA------AAAGAGCATCGGATGGA-----GCTCTTTCGCAATGCAATacttttctgtctttttt--------gagaaatgacg--TTGCAC-------------AA---CAAACA------------CTGGGtg--tgtt----tcttcat---tttct---------cctaCTCGCTATA-TCTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6097021 142 + 20921866 TCGATGTGTTCAAATAAACACACA-----------------------------------------------ATGTGCGCAA------AAAGAGCAACGGA---------GCTCTTTCGCAACGcaatattcttctttttttttt--------gagaaatgacg--TCTCAC-------------AA---CAAACA------------GTGTgtg--tgtt----ttttcattcgtcttc------------------tata-tctat
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2410523 144 +  4147112 CCGATTTGTTCAAATAAACACACA-----------------------------------------------ATGTGCGCAA------AAAGAGCATCGGACGAAG---CTCTCTTTCGCAATGCAata--cttctcttttttga--------gagaTATGACG--TCTCAC-------------AAACGCAAATA--------------GTGTT--TGTT----TCTTCAC---TCTTT------------------TATA-GATAT
i caePb3.Scfld02_0      I 50 C 0
s caeJap4.Scaffold17084  326626 185 +   375229 CCGATTTGATCAAACAAAGACACAATCACACATCTCACACAGCTCTGCGCACCACATCGCACCGCACCACACTCGGCGAAAtgggggagagagagagagaaggagGACTGCCTTTTTATTTCGAAATCGTCGTGTTTCTTATTT--------------TAACT--TCTCGT-----------------------------catcattttaaatt--tttt----tcctccc---TGTTT----------------------------
i caeJap4.Scaffold17084 C 0 I 56

a score=5209.000000
s ce10.chrX             4142685 100 + 17718866 A----TTCCAACTAGAC--CCTCCCCCAGAGAA----AAAA----------GTCATATTCGTTTTTTGCACGTCGCCGGCCGGGTCACGAGG----------AACGCGTACTCAGAACGT------------------TCTC--------ATTCTT
s cb4.chrX              9247369 120 + 21540570 C----TTCGGACTAGA----CTCCCCGGAGaaa----aaaaCGCGGCCGCCGTTCCGTTCCTTATTT----------GGTTGTATCACGAGGAGCAGGAGCAGAAGCGCACCCAGTACGT--------------TCTCTCTCACTTGActattctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1121163 103 -  4500979 C----TTCCAACTAGAC--TCTCCCCAGAGTAA----CAAA-----TTGTGTGCTCGTTCCTTATTT----------GGATG--TCACGAGGAG--------AAAAAGCACCCATTGCGT------------------TCTCACTTGTGTAGTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6097163 116 + 20921866 t-tttcttcaactagACTTTCTCTCTAGAGAAA----AAGC----------GTTCCGTTCCTTA----------------TAAGTCACGAGGAG--------GAAAAGCACCCAAAGCGTTTTCGctttctccctctctctctctc-tctagtctt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2410667 100 +  4147112 CGTTGCTCCAGAAAAACTATCTCCCTAGAGGTCTTTTCAGC----------GTTATGTTCCTTCCTT-----------TTTGAGTCACGAGAAG--------AAAAAGCACCGAGAGCGt---------------------------tctattctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811  56 +   375229 I

a score=208612.000000
s ce10.chrX             4142785 633 + 17718866  
s cb4.chrX              9247489 695 + 21540570  
i cb4.chrX              C 0 I 379
s caeRem4.Crem_Contig0  1121266 654 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  6097279 619 + 20921866  
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2410767 646 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  326867 539 +   375229  
i caeJap4.Scaffold17084 I 56 C 0

a score=-1608.000000
s ce10.chrX             4143418 56 + 17718866 CTCTTCT-----ACACCCACGTG--TTGTC--ACTAGTCTTCAGTCTTCCGCTTTTGCTTTTA----------TT
s caeRem4.Crem_Contig0  1121924 49 -  4500979 -----------------CACGTGTGTTCTG--TCTAGCATTCATTCTTCAGTCTTCAATTCTGATT-------TC
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold630  6097901 52 + 20921866 ---------------ACCACGTG--TTGTC--TCTAGTCTTCAGTCTTTC-CCCACGCATCTGATGTCAA---TT
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2411418 65 +  4147112 TTCCTTT-----CTCACCACGTGC-TTCTA--TATAGTCTTCAGTCTTT--TGTATGCTTCTGATGACAAATTTT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  327406 62 +   375229 -TCATTCCAGAACAACCCACGTG--TTGGAAGTctagtttt---tctttcttctgtATTGCCATTC-------TT
i caeJap4.Scaffold17084 C 0 I 339
e cb4.chrX              9248184 379 + 21540570 I

a score=-27524.000000
s ce10.chrX             4143474 732 + 17718866  
s caeRem4.Crem_Contig0  1121973 354 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6097953 397 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2411483 393 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327468 339 +   375229 I
e cb4.chrX              9248184 379 + 21540570 I

a score=1416.000000
s ce10.chrX             4144206 11 + 17718866 CCCCTATTTGA
s cb4.chrX              9248563 11 + 21540570 ctcttttttct
i cb4.chrX              I 379 C 0
s caeRem4.Crem_Contig0  1122327 11 -  4500979 CCCTTTTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098350  5 + 20921866 ------CTTGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2411876  5 +  4147112 ------CTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327468 339 +   375229 I

a score=114136.000000
s ce10.chrX             4144217 149 + 17718866 GAAGTCAAGAATTAGTGTCGTCACAAGGGAACCAGTTAAT----TGGTCC---CTGAGAACGGTGACATCACCGAGGCCGTACACAGCGCCACACTCACTGTTTCTGATTCCTGATGCTATTCAC------------CTAACGAATCCG------GCTTC-GTCTGTGCAAACA--T
s cb4.chrX              9248574 149 + 21540570 gaagtcAAGAATTAGTGTCGTCACAATGGAACCAGTTAGTCCGGTAGTCCCCACTGAGAACGGTGACATCACCGAGGCCGTACGCT-GAACA----CATTGTTTCTGATTCCTGATACGA--CGC------------TAGACGAATCCG------GCTTCCTTCTGTGCAAATA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122338 151 -  4500979 GAAGTCAAGAATTAGTGTCGTCACAATGGAACCAGTTAGTCAGTTAGTCC---CTGAGAACGGTGACATCACCGAGGCCGTACGCA-CGCCA----CACTGTTTCTGATTCCTGATGCTATTCAT------------CAGACGAATCCG------GCTTCGTCCTGTGCAAATACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098355 159 + 20921866 GAAGTCAAGAATTAGTGTCGTCACAATGGAACCAGTTAGTCAGTTAGTCC---CTGAGAACGGTGACATCACCGAGGCCGTACACA-TGCCA----CACTGTTTCTGATTCCTGATGCTA--TTTCACCCCTTCACGTCGACGAATCCG------GCTTC-GTCTGTGCAAATAG-A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2411881 159 +  4147112 GAAGTCAAGAATTAGTGTCGTCACAATGGAACCAGTTAGTCAGTTAGTCC---CTGAGAACGGTGACATCACCGAGGCCGTACGCA-CGCCA----CACTGATTCTGATTCCTGATGCTA--CTT--GCCTTCCACACCAATGAATCCG------GCTTCAGACTGTGCAAATAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  327807 140 +   375229 GAAGCCAAGAATTGATGTCGTCACAATGAGAATGAATAGT----TGGTCC---CAAAGAACGGTGACATCACAAAA-----------AACCG----CTCTGATTCTGATTCCTGATGCTATTTAG------------TCGAACAAGTCGTGGCTTGCTTT-GCTTGTGCAAACAT--
i caeJap4.Scaffold17084 I 339 I 21

a score=2661.000000
s ce10.chrX             4144366 36 + 17718866 TTCGCATTCCACTCCCACCACCCCCCACTAAACGG-----C
s cb4.chrX              9248723 27 + 21540570 --GAAA---TGTTGCTACCACCCACC---GAATGA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122489 31 -  4500979 TCCACA---TTTCACTTCCACCCACC--TGAACGG-----C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098514 35 + 20921866 TCGGAA---CATTCC-ACCTCCCACC--TAAACGAATCAAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412040 36 +  4147112 TCAGAA---CATTCCGACCACCCACC--TAAACGAGACGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327947 21 +   375229 I

a score=51401.000000
s ce10.chrX             4144402 174 + 17718866 CCTG---------------AATCAGT----CGTTTGTT--------CTCGCCCAA-TTTGACT------------CCTTCCGCCGCCCTGAATAT------TGTAGTTTGAGTGGGTGTACCGAACACG---GTCGTGTGACTAGGTGACTGACTAT---TCGTCCGGTCTGGTTGGGG---GAAGAAT---CT-----AAGTATACCCATGACGTGG----------------------CCGAATCT---GAGTGCGGGAA
s cb4.chrX              9248750 215 + 21540570 ------ATACAGTCATTC-ATTCggt--tttctctatttttca--tttcgcCCAA-TTTGAATCCAACAC-----AAAAATGCT-TATAGTATGTATCT-GTGTTGTGTG-GGAGGTGTA-CGAACACGGGTGTCATGTGACT-----------CCT---CCATCCGGTCT-----------AAGAAATTGGCTAAGT-GTGGGTACATATGACGTGGTGTCATTATTAGCAGAGGAGGGGAGAAAATTGGGAGTGCGGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122520 203 -  4500979 CCTGATGTACAGTCATTCAATTCCAT--TTCACTTATTCTTC----CTCGCCCAA-TTTGACTCCTACTT-----GCTTCCGCC-CCCTGAATAT------TGTAGTATGAGGGGGTGTA-CGAACACA---GTCGTGTGACT------------CT---CCGTCCGGtctgagaagaa---aagaaattgactAAGA-AAGTGTACCCATGACGTGG-----TCGTTAGC---------GGGAATAT---GAGTGCGGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098549 211 + 20921866 CCTGatc---attcttctcattcacttattcacttcttcttcctccctCGCCCAA-TTTGACTCCTACTCACACAACTTCCGCCGCCCCAAAAAC------TGTAGTATGTGGGGGTGTA-CGAACACG---GTCGTGTGACT------------CT---CCGTCCGGTCTGGgaagaa---aggaaattgaCT-----AAGTGTACCCATGACGTGG-----TCGTTAGCTGA------GGGAATAT---GAGTGCGGGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412076 206 +  4147112 CCTGATTTAGCCTATTCCCATTCActtattcatttctt-------cctcGCCCAATTTTGACTCCTACTC-----ACTTCCGC--CCCTAACTAT------TGTAGTTTGAGGGGGTGTA-CGAACACG---GTCGTGTGACT------------CT---CCGTCCGGTctaggaagaa---aagaaatagacTAAGAGAAGTGTACCCATGACGTGG-----TCGTTAGCAAA------GGGAATAT---GAGTGCGGGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  327968 172 +   375229 ---------------------------CTTTATTTAGTGTCTA--TTTCATTCAA-TACCAAC------------ATTTCCGGT-TCATGAACATGAATAATTTAGTTTGGGG------A-GAAACTGA---TTCTCATGATT------------CTTACCTGTCCGGTTTGGGAAGAATAGAAGAAAT----------TAATGTACTCATGACGTGG-----CCGATTGCGG-------GAAAAGGT---GGGTGCGGGAA
i caeJap4.Scaffold17084 I 21 I 30

a score=-4041.000000
s ce10.chrX             4144576 20 + 17718866 AA--AAAATCACAAACGGAGTG
s cb4.chrX              9248965  9 + 21540570 A---AAACT----------GTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122723 15 -  4500979 AATCAAACT-------AAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098760  4 + 20921866 AA------------------TG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412282 15 +  4147112 AATCAAACT-------GAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328140 30 +   375229 I

a score=10848.000000
s ce10.chrX             4144596 28 + 17718866 ACGAT-AAAAGTG-GAAACTTTTCAAACTG
s cb4.chrX              9248974 30 + 21540570 TCGATAAAAGCAACTCAACTTTCCAAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122738 29 -  4500979 ACGATAAAAAGGA-GAAACTTTCCAAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098764 28 + 20921866 ACAAT-AAAAGAC-GTTAGTTTCCAAACTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412297 29 +  4147112 ACGATAAAAAGGC-GATAGATTCCAAACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  328170 28 +   375229 ACGAT-AAAAGCA-GGATCGTAACACACTG
i caeJap4.Scaffold17084 I 30 I 741

a score=45660.000000
s ce10.chrX             4144624 462 + 17718866  
s cb4.chrX              9249004 455 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1122767 538 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6098792 515 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412326 578 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328198 741 +   375229 I

a score=201583.000000
s ce10.chrX             4145086 325 + 17718866 TTCTTCTCCAATTTTCTCGCTCCTGCCCCGCCGTCATGTAG--AATCATCCCACGTGGGGATGGCCTCTGCCCGGAGAAACATGATGATAAAAGAAGAGATCGCAGATGTCAATGAGGGTTTTCCTCGGGCG-------CCGGTGTCATTG-AAAACCTTTAACTCTTGCGTCTTTAT---TTCTCTGCGT----------TATACAGAAAAGTTGG--CCACTCTAATA---ACGGCGTC----GTAGCGCCTCATTTTCTCGCC-----------TGGCTCCACCCA-CAGTC---CCTCCCC------------AAATC--GAAACTGC--------TAGCTATAAAACGGTCTTCGAACGACAGTTCTTATCGCATTCATCCT------CC---TTTGG
s cb4.chrX              9249459 367 + 21540570 TCGTTTTTCGTCTTTCTCGCTCCTTC----CCGCCGTTTCGCCAATCATCCCACGTGG-----------ACCTCACGAAACATGATGATAAAACGAGAGATCGCAGATGTCAATGAGGGTTTTCCCCAACCGATAACCCTCAGTGTCAATGAAAAAACCTTTAACTCTGTGTCTGTGTT--TTCTCTGCGACAGAAAATTTCGTACCGAAAAGTGT----TTCGACCCTCCTTC------------CATCGCCGTTGTCTTCTCTCGCGCCTCGGGGCAGCTCCACCCACCGATC---CCTCCTTCTTTCCgcctaaaaactaaaaaactgcGTCTTTTGTCGCTATAAAACGGTCTTCGAACGACAGTTCTTATCGCATTCATCTCACTTCGTCTTAATCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1123305 320 -  4500979 tcgtttttc----ttctcgcTCCTTC----CCGTCACTTAG--AATCATCCCACGTGGGGCTGGCCTCTACCCGCCGAAACATGATGATAAAACGAGAGATCGCAGATGTCAATGAGGGTTTTCCCCAG----------TCCGTGTCAATGAAAAACCTTTAACTTTTGTGTCTGTGTTTCTTCCCTGCGA----------CGTACCGAATAGTTTC--CTCCGATACTCCTCACCGCTTC----GCAACGCCTCTATCTTTT--------------CGGCTCCACCCA-CAATC---CCTCCCC------------AAACT--AAAACTGC----CTGGCTGCTATAAAACGGTCTTTGAACGACAGTTCTTATCGCATTCATCTC-----------TTCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6099307 322 + 20921866 ----tcttc----ttctcgttctttC----TCGTCACTTCG--AATCATCCCACGTGGGGCTGGCCTCTGCCCGAAGAAACATGATGATAAAACGAGAGATAGCAGATGTCAATGAGGGTTTTCCCCGG----------GCCGtgtcaatgaaaaacttctAACTCTTGTGTCTgtgtttcttcaattcac----------CGTACCGAAAAGTTTC--CTCCGATACTC---ACCGCATC----GCAACGCCTCTGTCTA----------------CGGCTCCACCCA-Caatccctcctcctc------------caact--AAAACCGC----CTGGTCTCTATAAAACGGTCTTCGAACGACAGTTCTTATCGCAATCATCTCATTTCGTC---TTCCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2412904 314 +  4147112 -caattttc----ttctcgttctttC----TCGTCACATAC--AATCATCCCACGTGGGGCTGGCCTCTGCCCGGAGAAACATGATGATAAAACGAGAGATAGCAGATGTCAATGAGGGTTTTCCCCGG----------GCCGTGTCAATGAAAAACCTATAACTCTTGTGTCTGTGTTTCTTCCCTTCGA----------CGTACCAAAAAGTTTC--CTCCGATACTC---ACCGCGTC----GCAACGCCCCTGTCTC----------------CAGCTCCACCCC-CAATC---CCTCCTC------------CAACT--AAAACCGC----CTGGCGACTATAAAACGGTCTTCGAACGACAGTTCTTATCGCATTCATC--------TC---TTCCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  328939 317 +   375229 ttcttcttcattttttcccctaTCGC----TCGTCAGATAG--AATCATCCCACGTGGGG--GCCCTTTTCCGAGAGAAACATGATGACGGAACGAGAGATCGCAGATGTCACTGA-----TTGCCCGGACG-------GTCGTGTCATTG-AAAACTGCCAACTCTTGTGTCTGTGT---TTCTCAGCGA--------------ACAAAAAGTGTCTTCTCCGTTAAC----ATTTCGTTGCGGGCGCCGCCTCTGTCTTCTC-------------CGGCTCCACCCA-CCACT---TCCTCTC------------CAACC--GAATCTGC----CTGGTCGCTATAAAACGGTCTTTGAACGACAGTTCTTATCGCATTCATTCT------TG---TTTCG
i caeJap4.Scaffold17084 I 741 I 35

a score=9847.000000
s ce10.chrX             4145411 34 + 17718866 CTAAGTTATTGATATTGATATTATTTGCGTCTAG
s cb4.chrX              9249826 22 + 21540570 CTAA---------CTTA---TTATTCGCGTCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1123625 28 -  4500979 Ctaagttat---tttta---ttattcgCGTCTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6099629 28 + 20921866 CTAAGTTAT---TATTG---ATATTCGCGTCTAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2413218 30 +  4147112 CTAACTTAT---TATCGAT-ATATTCGCCTCTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  329256 35 +   375229 I

a score=19879.000000
s ce10.chrX             4145445 151 + 17718866 -ACA-TTTCAAATTCCACAAATCACCAGAA------AAAATGAACTTCGTTGGAACTAATCAACTCGAGACCGGCCTCCATTTCCCATGCAGGTAATAC-------TTCTGAGAACCGCCGGCTT------TATGTGAT-----TCAAAAC-AAA-------ACGCTGCTTTTTCTGCTTTTCC-C
s cb4.chrX              9249848 162 + 21540570 -CACTTTTCCAATT-CACACcactcaaaaa--actcaaaatgaaCTTTGTGGATACAAATCAACTCGAGTCTGGACTCCATTTCCCATGCAGGTAATATTCGTT--GTCTTTCCGTATCCCAAGT-ATCCCAAGTACATCCAAGTCTAACC-AAA---------GCGT------ACGCTTTTCCG-
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0  1123653 150 -  4500979 -AAC-TTTCAAATT-CACA-----------------AACATGAATTTTGTTGGCACAAATCAACTCGAATCAGGACTCCACTTCCCATGCAGGTAATCGTTGTtcgttctttttgttttcgatttcACACAAAGTGTAT-----TCCAACT-AAA---------ACATGGACAGACGCTTTTCCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6099657 151 + 20921866 -CCC-TTTCAATTC-CCC------------------ACAATGAACTTTGTCGGCACTAATCAACTCGAGTCCGGACTTCATTTCCCATGCAGGTAATAtca-----ttctcttgtttttctgtgt-CGTCGGAGGGCAT-----TTGTACT-AAAAATATATACGTATTCCTATAGTCTATTCC--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2413248 150 +  4147112 -AAc-tttcaaatt-cac------------------aaaatgaaCTTTGTCGGCACTAATCAACTTGAGACCGGACTCCACTTCCCATGCAGGTAATCATA-----TTTTGTTGTTCAATGGAAT---TTGAAGGGCgt-----tccaactgaaaaatatttatgcaTACACAGACGCTTTTCC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  329291 117 +   375229 acag-tttgaaaaa-aaaaacgcagagaaaaaaacaaatatgaaCTTTGTCGGCAACAACCAGCTAGAATCCGGACTTCACTTCCCATGCAGGTAA-ACCAGCTGATTCTAGTCTGTTCC------------------------------------------------------------------
i caeJap4.Scaffold17084 I 35 C 0

a score=998.000000
s ce10.chrX             4145596 57 + 17718866 CATCAG-----TAATACACATCCCCCCTTCTCCTTACTCCGCCAGCATAATGTGGCGAGAGA
s caeRem4.Crem_Contig0  1123803 41 -  4500979 ----AG-----TAAAAA-------CGCCCCTCTTTTTCTCG---ATG--TGGTGACGAGAAG
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6099808 55 + 20921866 TAGTAG-----TAGTAAAGGG--CCTCCCCCCTTTTCTCCGCCAATGCATTGTGGTGAGAGG
i caeSp111.Scaffold630  C 0 I 4
s caePb3.Scfld02_0      2413398 45 +  4147112 TAGTAG-----TGACAA-------CTCTCCTCCTTCCCC-----ATGCATTGTGTTGAGAGG
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  329408 55 +   375229 CACtagcattttgaaat-------ttctccGCATAATTTTTGCAATGCAAAGAGAGAAGAGC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9250010 33 + 21540570 I

a score=59831.000000
s ce10.chrX             4145653 143 + 17718866 ----GTGTGGGAGGGTTGGCAGTATGCCAAGAAT--------GCGCGT---CGC-TTGCAACAAAAATCGATTCTCGG---AGTG---CGGGGT-----GACACAGCAGCCCCCTGGCTGCCTCTTTTTAGCTGT----------TTCGTCATCTTTTTTTTTC-------ATGC-ACTA---TACTTCTT
s cb4.chrX              9250043 131 + 21540570 ----GTGTGGGAGGTCTCGCAGTATGCCAAGAATGC------GCGCTT---CACATTGCAactaaaatcgattttcggagTAGTG---CATGCC----AGA---CGCGACACGCt------------------------------ctcctcttctccttctttt-------agACTACTAGTTTGCCTTCT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0  1123849 161 -  4500979 ----GCGTGGGAGGTCTGGCAGTATGCCAAGAATGCTGCTGTGCGCGT---CTCTTTGCAACTAAAATCGATACTCGG---AGTG---CATGCTGAAGAAA---AGAGACACTCTGCCTTCG---TTTGGTCTAGTTCGCTTATCTtcctcttttcacttttct-------atgC-ACTA---TACTTTTT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6099867 160 + 20921866 ----GCGTGGGAGGCCTGGCAGTATGCCAGGAATGCTACTGCGCGTTTCGTCGCTTTGCAACAAAAATCGATTCTCGT---AGTG---CATGCT-----GA---AGCGACACTCTGCCTTCG--TTTTGGGCTAGTTTGTCTCGGttcttcctcatcttctttt-------ttgc-acta---tacttttt
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0      2413447 165 +  4147112 ----GCGTGGGAGGTCTGGCAGTATGCCAAGAATGCAGCTATGCGCGTCGACGCTTTGCAACAAAAATCGATTCTCGG---AGTA---CACGCT-----AA---AGCGACACTTTGCCTTCG---TTTGGGCTATTTCCTCT-AACTTTTCCTCATCTTTTTTCGTCGCCGTTGC-ACTA---TACTTTTT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  329463 156 +   375229 GTTGGTG-GGGTGGCTTGGCAGCATGCCAAAAATTCTTTC--GCATGC---TGC-TTgcaacaaaaatcgatatttgg---agTGACTCAGAGT-----GG----GTAGCAGGCTCCCCACA--TTCTGccccttttcattt---ttcctctTTGGCCCTGCCC-------TTAC-ACTA---TACTTTCT
i caeJap4.Scaffold17084 C 0 I 85

a score=-7445.000000
s ce10.chrX             4145796 22 + 17718866 TTTCCGCGCCCAAAA-----TTGAAGA-----------
s cb4.chrX              9250174 24 + 21540570 a--tactttcaaaaatgctgT--AGAAC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1124010 19 -  4500979 G--CGTCTCTAAAAA-----T--AAGAT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6100027 29 + 20921866 t-tttgcttcagaaa--------aaaatcaattgaaga
i caeSp111.Scaffold630  C 0 I 59
s caePb3.Scfld02_0      2413612 31 +  4147112 TGCctccttcaaaaa-----t--gagatcGATTGAGGA
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold17084  329619 85 +   375229 I

a score=-7458.000000
s ce10.chrX             4145818 42 + 17718866 CAAGTGCTTTTATACTAAATTTCCCGC-CAATC---------CAAACtaaat
s cb4.chrX              9250198 29 + 21540570 CAATCGTTAAAGGTCAAACTCTGT----CAGTA-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1124029 50 -  4500979 CGATAGCCAATGGTCGTTGTCTGTCATCCAGTAGTTGAGAAGGAAACT--TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2413663 10 +  4147112 ----------------------------CGATA------------ACT--TT
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17084  329619 85 +   375229 I
e caeSp111.Scaffold630  6100056 59 + 20921866 I

a score=-1410.000000
s ce10.chrX             4145860 16 + 17718866 -ttatatttttt---tatta
s cb4.chrX              9250227 11 + 21540570 -TGATGACAATC--------
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1124079 16 -  4500979 -TGAGGTTTTTC---TTTAG
i caeRem4.Crem_Contig0  C 0 I 36
s caePb3.Scfld02_0      2413673 16 +  4147112 -TTAAGTTCTTC---TTTAG
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold17084  329704 20 +   375229 TTGCAattcttcccctttca
i caeJap4.Scaffold17084 I 85 C 0
e caeSp111.Scaffold630  6100056 59 + 20921866 I

a score=-21393.000000
s ce10.chrX             4145876 115 + 17718866 tttttatCGCCTAGT---CAAGTTGGAA-------CCTTATCACTGTCCCACCGCTCAAAAAATAAAATCAAAGT-------------------TTACC------CTGAAATGTATTGAACATGTTTTGTGTT----TCTGTTATCAAAAAGAA-
s cb4.chrX              9250278  90 + 21540570 ttttttttcccgcGC---CAACCAACCAAAACT-------------TTTTATCACC----ATCACCACTAAATTT-------------------TTTGCATCGTTTCAATA-----------------GTGTG----ATC-TTATCAAGCA----
i cb4.chrX              I 40 I 82
s caeRem4.Crem_Contig0  1124131  98 -  4500979 tttttatcgCCACACATACAACGCTGCAATAGT--CTTGATTCTAATCTTATCAtc----atcttttctcaaaat-------------------gtaaC------TTGAAA-----------------GAGTG----TTC-TTTATCAACA----
i caeRem4.Crem_Contig0  I 36 I 2
s caeSp111.Scaffold630  6100115  93 + 20921866 tttttatcacCTCACATTCAAACATGCA-------GTCGATTGTGATCTTATCGT--------TTTGTACAAAAT-------------------GTAAC------CTAAAA-----------------ATGATTCGATCT-TTATCAAATA----
i caeSp111.Scaffold630  I 59 C 0
s caePb3.Scfld02_0      2413729  95 +  4147112 TTTTTATCACCGCACATTCAACGTTGCAAGTACCCATTTAATATCATCTTATCG---------CTCGAATGAAAT-------------------GTAAC------CTGAAA-----------------ACGGT----TCT-CTATCAAACA----
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17084  329724  99 +   375229 tttttctca---------caatt------------tttatttcttttcttccccct-------ttgacaaaaaataagaatcgTAGTTTTCTgaataat------acaaaa-----------------atttc-taatgt-TCCTCAaaga---a
i caeJap4.Scaffold17084 C 0 C 0

a score=860.000000
s ce10.chrX             4145991 18 + 17718866 AACATT-GTTCAATTTTTC
s caeRem4.Crem_Contig0  1124231 17 -  4500979 --CATCTTTTCGGACTGCC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6100208 18 + 20921866 AACATC-TTTTGGACTGTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2413824 18 +  4147112 AACATC-TTCCGAACTGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  329823 11 +   375229 -------ttttattttac-
i caeJap4.Scaffold17084 C 0 I 48
e cb4.chrX              9250368 82 + 21540570 I

a score=-2469.000000
s ce10.chrX             4146009 50 + 17718866 GATCT------TTTAGTTTTTGTAT--TCTCATTTCTTTATCCAAAACCGTATTGGCG
s caeRem4.Crem_Contig0  1124248 49 -  4500979 AATCGGGCCCATCCATTTTATACGTCAAATCCACTATTGA---AGGATTACG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6100226 42 + 20921866 AATCGTACCGATCCATTTTCCATCT--TATCCATT--------AGATTTACA------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2413842 43 +  4147112 AATCGGAATGATCTATTTTGTTTCC-ATATCCTCT--------AAGATCGGA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  329834 48 +   375229 I
e cb4.chrX              9250368 82 + 21540570 I

a score=328087.000000
s ce10.chrX             4146059 606 + 17718866  
s cb4.chrX              9250450 684 + 21540570  
i cb4.chrX              I 82 I 62
s caeRem4.Crem_Contig0  1124297 626 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6100268 649 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2413885 630 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  329882 662 +   375229  
i caeJap4.Scaffold17084 I 48 C 0

a score=-12925.000000
s ce10.chrX             4146665 64 + 17718866 AGACCAAAAAAAAGTTGAACTTAAAAAG---ACTGACTGTGAAACGAAATTAACATTAATCCTTCAT
s caeRem4.Crem_Contig0  1124924 56 -  4500979 -----AGACCAAATCTCATCTTCAACTA---AAT-CCTAGTGATGATATCTTGA-ctaattcttta-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6100917 54 + 20921866 ----TagtcaaaaagtggtcacTTATC---------TCATGCATAACAACTCAATCTAATTTCATGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2414520 57 +  4147112 ----TAGCCAAAAACGGTTCATTCACC-----AT-TCCATGCATCATGACCCAAATTAATTGAACGC
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  330544 66 +   375229 ACATgtaacaaaaattgaaaatagaaagaaaaattacattagaaaatcgcaaaatctaATTGTATG-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9251134 62 + 21540570 I

a score=517931.000000
s ce10.chrX             4146729 1056 + 17718866  
s cb4.chrX              9251196 1174 + 21540570  
i cb4.chrX              I 62 C 0
s caeRem4.Crem_Contig0  1124980 1097 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6100971 1066 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2414577 1050 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  330610 1045 +   375229  
i caeJap4.Scaffold17084 C 0 N 0

a score=6515.000000
s ce10.chrX            4147785 49 + 17718866 GAAACCAAAATAATACATATTTTATTCCCCGAAC--ACATGCAAACTTGTC---
s cb4.chrX             9252370 37 + 21540570 CGTACt--caaaatacatattttactctgcaaac--------------atttt-
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1126077 39 -  4500979 CAAACC--AATCATACATATATTATTCCGCAAAC-------------TATTgtc
i caeRem4.Crem_Contig0 C 0 I 108
s caeSp111.Scaffold630 6102037 43 + 20921866 CAAACA---ATGATACATATTTTATTCCGCAAAC--AAACGTG---TTATc---
i caeSp111.Scaffold630 C 0 C 0
s caePb3.Scfld02_0     2415627 42 +  4147112 CAAACA------ATACATATTTTATTCCGCAAACAAAAACGTG---TTATT---
i caePb3.Scfld02_0     C 0 C 0

a score=2079.000000
s ce10.chrX            4147834 5 + 17718866 AGACA
s cb4.chrX             9252407 5 + 21540570 gaaca
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold630 6102080 5 + 20921866 gaaca
i caeSp111.Scaffold630 C 0 I 1513
s caePb3.Scfld02_0     2415669 5 +  4147112 GAACA
i caePb3.Scfld02_0     C 0 I 1
e caeRem4.Crem_Contig0 1126116 108 -  4500979 I

a score=-554.000000
s ce10.chrX            4147839 54 + 17718866 TGTTCAATGTAGAAAGTGTCAGAAAATGATCAACAGCCT---------TTAATGACGGAGAAA
s cb4.chrX             9252412 61 + 21540570 --gccaatagagagagagagagagttaAAGGAATGATTccgaaaatcatcaaaaacaaCCAGA
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2415675 50 +  4147112 ----CAACGGATGTTGAAAGAAACAATGAGCGATGACTT---------TAAAAAAGGATGAGA
i caePb3.Scfld02_0     I 1 I 1086
e caeSp111.Scaffold630 6102085 1513 + 20921866 I
e caeRem4.Crem_Contig0 1126116 108 -  4500979 I

a score=285.000000
s ce10.chrX            4147893 9 + 17718866 ACGTTGATA
s cb4.chrX             9252473 9 + 21540570 AGTTTGATG
i cb4.chrX             C 0 I 180
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I
e caeRem4.Crem_Contig0 1126116 108 -  4500979 I

a score=0.000000
s ce10.chrX            4147902 35 + 17718866 CAAACACACGCGTAGTTACTTTTTGCCTTATGTTA
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e cb4.chrX             9252482 180 + 21540570 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I
e caeRem4.Crem_Contig0 1126116 108 -  4500979 I

a score=107.000000
s ce10.chrX            4147937 116 + 17718866 TAAAAAAGAAAATCTCAATTTGAGAATATTCTAAAAAAAATGTTCAGTTAGAGATAATACCAATACTTGA-----ATTTTGAGTTA-AAAC----TGTCGAATTGCCATATTTGCCGAACATCTAA
s caeRem4.Crem_Contig0 1126224 108 -  4500979 TGACAAAGGAAGCCT--ATTTG------TTTTAGAACAA---------CACAACGAATTCCAAT-CTCGATAACTCTTTTGACCTGTAAACAACATACTGAACAGATCGGTTCGCTGGACACTCAA
i caeRem4.Crem_Contig0 I 108 I 68
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e cb4.chrX             9252482 180 + 21540570 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I

a score=0.000000
s ce10.chrX            4148053 39 + 17718866 AAAACGCTACCAACtataaatataaaacattataaaatt
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e cb4.chrX             9252482 180 + 21540570 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I
e caeRem4.Crem_Contig0 1126332 68 -  4500979 I

a score=151.000000
s ce10.chrX            4148092 3 + 17718866 aat
s cb4.chrX             9252662 3 + 21540570 AAC
i cb4.chrX             I 180 C 0
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I
e caeRem4.Crem_Contig0 1126332 68 -  4500979 I

a score=-24056.000000
s ce10.chrX            4148095 335 + 17718866  
s cb4.chrX             9252665 502 + 21540570  
i cb4.chrX             C 0 I 264
s caeRem4.Crem_Contig0 1126400 465 -  4500979  
i caeRem4.Crem_Contig0 I 68 C 0
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I

a score=-764.000000
s ce10.chrX            4148430 145 + 17718866 AATTGGC----AAAAAAACTCCAATTTTGAATTTATGATAAATTTAAAATTTTAACAAC--AAAAATGTGAAGAATTTCGGATACTCTAAAAAATATTTATAAAAACCTTCAATAATGTCATGTTTCATTTCACATCC----GGAAATCGCGTTG
s caeRem4.Crem_Contig0 1126865 128 -  4500979 GCATAGctccagaaaaaagttcattgtTAGCATTATT----TCCTAAAAGtgtattatctgaaaaatatgaag------------tccAA-------TTCCAAATGATTTCACCATTTCCAGTATCGGTCTGACATTCTCAgggaaatcat----
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2415725 1086 +  4147112 I
e cb4.chrX             9253167 264 + 21540570 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I

a score=-667.000000
s ce10.chrX            4148575 29 + 17718866 TACAAAAATTGAAACCTGAAAAATTGTAA-----
s caeRem4.Crem_Contig0 1126993 29 -  4500979 --caaaaagtgatgT---GCACATTCCGATAAGG
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2416811 24 +  4147112 tacaaaaaatgaaat----catttttca------
i caePb3.Scfld02_0     I 1086 C 0
e cb4.chrX             9253167 264 + 21540570 I
e caeSp111.Scaffold630 6102085 1513 + 20921866 I

a score=-3774.000000
s ce10.chrX            4148604 5 + 17718866 CAATT----
s cb4.chrX             9253431 5 + 21540570 ----tccca
i cb4.chrX             I 264 C 0
s caeRem4.Crem_Contig0 1127022 5 -  4500979 ----CACTT
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2416835 5 +  4147112 -agata---
i caePb3.Scfld02_0     C 0 I 3
e caeSp111.Scaffold630 6102085 1513 + 20921866 I

a score=5693.000000
s ce10.chrX            4148609 29 + 17718866 AAAA------AAATCTGAAATA------TGCCCACTTGAAA
s cb4.chrX             9253436 31 + 21540570 ----------aaaaaggaaacactTTGCTGCCcacttgaaa
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1127027 25 -  4500979 ----------AAAATAGAAATA------TGCccaattgaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold630 6103598 35 + 20921866 AAatagatctgaaaattaatta------tgcccacttgaaa
i caeSp111.Scaffold630 I 1513 C 0
s caePb3.Scfld02_0     2416843 30 +  4147112 aaaaccatctaaaacgggaaaa-----------atttgaca
i caePb3.Scfld02_0     I 3 C 0

a score=21284.000000
s ce10.chrX             4148638 43 + 17718866 ATTCATTTACAG-TTATCACATATGGCA--ATTGGAATTGAAAATA
s cb4.chrX              9253467 44 + 21540570 attcatttaCAG-TTATCACATATGGCA-AATTGGAATTCAGGACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1127052 33 -  4500979 attcatttaCA---TATCAC--ATGGCA-AATTGGA-------ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6103633 44 + 20921866 attcattttaaa--taTCACATATggcatttttggaattcaaaaag
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2416873 45 +  4147112 atttaTTGGATGTTTATCACATATGGCG-TTgtggaatttaaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   75915 44 -   375229 ATTCATTTACAA-TTATCACATATGGCA-AATTGGAATTAAAGTTG
i caeJap4.Scaffold17084 N 0 I 21

a score=-6823.000000
s ce10.chrX             4148681 27 + 17718866 ATATT-----CTGAAACAAC--------------GCAGCGTTGTGA
s cb4.chrX              9253511 41 + 21540570 TTATT-----tggggagagaaaaaaacaacaacggTAGTGTTGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1127085 23 -  4500979 TTATT-----CAGTAAGACA------------------TATTGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6103677 25 + 20921866 taattgTAAACAACGAGAAG---------------------AGTGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2416918  9 +  4147112 taatt-----caa--------------------------------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   75959 21 -   375229 I

a score=35439.000000
s ce10.chrX             4148708 245 + 17718866 AGTGG------------AGCAAAAGACAATTGAAG-AAGAGATGAATGGAAAGTGTGAGTTAAGGACAATTATTTGATAAAATTACAAACTTGAATGA-----------------AAAGAAAAAGA-ACCAAAGAAAAAATGAGAAATATA-------TCTGAAACCGTGATCAACCGTTC-AATTTA-TCAAAAACGGCGGATGGCAAATCAGT-----------AA-ACATATCTAAACACAGGGCTAGTGATAGAAATG----ACGAAAGAGATTTTCACTTGCTTTGTCC--------AGAAAAA
s cb4.chrX              9253552 260 + 21540570 AACTGTGGAGCAAAGAAAGGATTTGAATTTGAGTTGAGAAGG----AGATGAGTGTGAATGGGGGAGG----------AAAATAAGACATTGTGATGA--------GGGAAATAAAGAGAAAATTG-CTCAAAGGAAGACA-------------------TGAAACCGTGATCAACCGTTC-AATTTGTTC-ATAACGGTGGATggcaaattaattttgaaaaagaaa-acatatcTAAACACAGGGCTAGTGATAGAAATG----ACGgaaagaatttttagaaaaaacttttgacaGGAAAAAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1127108 246 -  4500979 ATTCG------------AGCATTTTGGGGTTTGTTGAAGAGGTTGTTGGGAagttttcatagagaaaa---------caCAATGAAACAGTTGAGTGGGAAAAGGCGGGGGGAAGACAGGAAATTG-ACCAAATAATAGTAAAGAAATAAT-------TCTGAAACCGTGAACAACCGTTA-AATGTA-TC-ATAACGGTAGATGGCAAATCAAT-----------AA-ACATATCTAAACACAGGGCTAGTGatagaaatg----acaaaaa--------aggcACAATATCC-------AAATGATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6103702 215 + 20921866 AACGG------------AGCAATTGGTGTTGGGGT-GAGAGATGGGCGGAAAGAGTGGATTGGG----------------------ACATTCATATGA---------------GACAAGAAgattgttttaaaataagGTGAAAAAC--------------GGAACCGTGATCAACCGTTCAAATATA-TC-ATAACGGTAGATggcaaaatca------------aa-atatatcTAAACACAGGGCTAGTGATAGAAATGACAAACAAAATG-------AGTTACATTATCC--------TTTGGCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2416927 220 +  4147112 aaagg------------agcaaTTGA-GTTGGG---AGGAGATGGTTGTTCAATGTGGATGGGGG---------------ACTTGCAAGTTTGTAAGA----------------ATGGGACAGTTGTAATaaaaaaaGG-GACAATCAGTA-------TTTGGAACCGTGATCAACCGTTC-ATTGCA-TC-ATAACGGTAGATGGCAAATCAAT-----------AA-ACAATTCTAAACACAGGGCTAGTGATAGAAATG----ACAAAATA-------AGTCACGTTATCC--------TGTATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   75980 214 -   375229 ATCGG------------AGCAAGTAGGTGGTGGGG-AGGAGacgaataaaaa---------------------------------------taaaaaa----------------gaaagaaaaatt-attgaaaaagaacacaaaatgaaaacaacatttggaaacCGTGGTCAACCGTCGTAGGACA-TC-A-AACGGCGGATGGCAAATTAAT-----------AATGGATATCTAGACACAGGGCTATTGATAGAAATG----ACGTGTAATTTTTGCACTTCAAAGGTAC--------AGAAAAG
i caeJap4.Scaffold17084 I 21 I 56

a score=-19076.000000
s ce10.chrX             4148953 77 + 17718866 AAATGGA-TTGCTGCAAAGAAGAC-AAGAAAACAACAATTGTTAA------GAATGAGCTTATAAGAATATTGCATTGAAATTT---T
s cb4.chrX              9253812 64 + 21540570 TGGGATACTCG-GTGGATGTGGAT-TGCATAGAGATT---------------------TTGGCTGGTGTG-TGAATGGATGATAATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1127354 69 -  4500979 GAGGATA-TTG-CGAAATGTGGAT-AG-AGAGAGATGA-------------GAGCAGACCGATTTATGT--TGAATTGAAGACTGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6103917 72 + 20921866 AGGTTTA-ATG-TACAATATGGTTAAAAAGAGAGGCTTATGAGA-------CAATTGGATAATAGGGGG--TAAATAGAGAAT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2417147 79 +  4147112 GGGCATA-ACG-GGGAAAATGATT-AGAAGATAGAACATTGAGGTTACACTTATTTGACTTGTGGAGAT--TTTTCGGAAGCTT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   76194 56 -   375229 I

a score=168354.000000
s ce10.chrX             4149030 212 + 17718866 GAACAAGTAG----TTTACTTGGGAAGAGGACCGGTCAAAAACAGCTTCTCCGTTGGCGACGAGAAAATTGGGCTGGTTGTGTAGTGATTGATAAGAGCATTCATGTCCACAAACGTTCGGTTTCCAATTTTCAGGAGACCATCCACGTTTTGCACTTTGAAATGCTTGTTGCGTTCGATTCCGCGCATTGAGATCGACAAGTCTCCAGGCTGAAA
s cb4.chrX              9253876 216 + 21540570 GAGCAAATGAGGTGATTACTTCGGAAGTGGACTCGTCAAGTAGAGCTTCTCAGTTGCCGACGAGAAGCATGGATTGGTTGTGTAGTGGCTGATGAGCGCGTGCATGTTTGGGAACGTCCGGTTTCCAATTCTGAGTTGGCCATCGATCGTTTGCACTTTGAAATGCTTGTTGCGCTCGGTTCCTCGCACGGAGATAGACAAGTCGCCGGGCTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1127423 207 -  4500979 GACCA---------ATTACTTCGGAAGCGGATTAGTCAAGTACAATTTCTCAGTTGGAGACGAGAAGCAGGGATTTGTGGTGTAGTGGCTGATGAGAGCATGCATGTTGGAGAACGTccgatttccaattttcagctctccaTCCACACTTTGCACCTTGAAATGCTTGTTTCGCTCGATTCCTCGCACTGAGATCGACAAATCGCCaggctgaaa
i caeRem4.Crem_Contig0  C 0 I 148
s caeSp111.Scaffold630  6103989 200 + 20921866 ----------------TACTTTGGAAGTGGACCGGTCAAGTagagtttttcagtttgagaCGAGAAGATTGGGTTAGAAGTGTAGTGAGTGATCAACGCATTCATGTTCAAGAACGTCCTGGCTCCAATTTTGAGTTGACCATCCACATTCTGAACTTTGAAGTGCTTGTTGCGCTCAATTCCACGCATCGAGATCGAGAGGTCTCCcggctgaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2417226 205 +  4147112 --TCA---------TCTACTTTGGGAGTGGACCACTCAAGTACAATTTCTCAGTTGGTGACGAGAAGATTGGGTTGGTGGTGTAGTGGGTGATGAGAGCATTCATGTTCATAAACGTCCGATTGCCGATCTTCAGCTGACCATCCACATTTTGAACCTTGAAGTGCTTGTTTCGCTCGATTCCTCGCATTGAGATCGACAAGTCTCCGGGCTGAAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084   76250 210 -   375229 GAATAGAT------TTTATTTCGGCAAGGGTCCGGTGAGATACAATTTTTCGGTTTGCGATGAGAAAATCGGGTTAGTAGTGTAGTGAGCAATGAGGGCATTCATATTCAAGAAAGTGCGATTGCCAATTTTTAGCTGCCCACCGacgttcaaaactttgaaatgtttatttctttcaattccACGCATTGAGATTGACAAATCTCCgggctgaaa
i caeJap4.Scaffold17084 I 56 C 0

a score=273.000000
s ce10.chrX             4149242 3 + 17718866 AAA
s caeJap4.Scaffold17084   76460 3 -   375229 aaa
i caeJap4.Scaffold17084 C 0 I 39
e caePb3.Scfld02_0      2417431 1 +  4147112 I
e cb4.chrX              9254092 0 + 21540570 C
e caeSp111.Scaffold630  6104189 0 + 20921866 C
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=-990.000000
s ce10.chrX             4149245 16 + 17718866 ATTGAATTTAATATTA
s cb4.chrX              9254092  5 + 21540570 -----------TATGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6104189 12 + 20921866 -ataa---taatatta
i caeSp111.Scaffold630  C 0 I 163
s caePb3.Scfld02_0      2417432 13 +  4147112 -ATGA--TTTatatga
i caePb3.Scfld02_0      I 1 I 14
e caeJap4.Scaffold17084   76463 39 -   375229 I
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=-8080.000000
s ce10.chrX             4149261 187 + 17718866 --AATGGTTGAAAATATCCATTTTTGGTATTGTCTTCCTAGCAATATTCAAATGGGATACTGTCAATGAAGATTGATTTTA-ATTTAGATTGT----ATTCTG----ATCAGAATGA-----AAGCGTATTAACT---GTAATA--TATAGTTTGGAGT------GAAAATGTTCAAA---TCAAACGCTAGAACGTTTTTTTTTCCTTTGCGGTCC
s cb4.chrX              9254097 183 + 21540570 --GACGTTAGATAATTAATACTTCTAGATTTGTATG---------------------------AAACGAAGATTGGATTGACGTTTTTACTTCTCT-CTTCTA----GCTTAAATAATAAAAGACTTTATAGTTTGGGGGTATGGATCAGCCTTCAactcaaaagaaaaatactcAAATAATGAAACCCTAAACGAGTACTGTTTTCCTTGCAATTC
i cb4.chrX              C 0 I 296
s caePb3.Scfld02_0      2417459 147 +  4147112 aacaatttggaaaatagaaaattttagaTCAGTTTAACT----CTGTCC----------TGGTAATCGATAGTTCACACGA-GTTTTTATCATTCTAATTCTACTGCATTCCACTGATGAATAAACTTATGAAAT---GCTATG--TGAACCTC-----------AGAAATGCTAAGA---------------------------------------
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17084   76463  39 -   375229 I
e caeSp111.Scaffold630  6104201 163 + 20921866 I
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=-2582.000000
s ce10.chrX             4149448 312 + 17718866 TTGATTTTGGTAATTAATTTCGTAGTATCTCGGTCATTTGCTGCCATTTTTAAACTAATTGTAGCCTCTTGCCAGCCTTCATTCTTTTGGATTTTTTTTGCACTAAGTTTAAAATAAAACTAAATTTAACAACTTCTT------AAACAACTTGAATCTCCTTATTCGTCGATTTTAGTTTTAAAACCAATATTAGCAACTTTGTGA-CTATACTTCACCAACTTTGGCAACTGTTTGAACAACTTTAGTATCCCACAACTTCTCAACCAACTTTTGCAACTTCTGAAATTGGCATTTCTAAAGTTGCTAGGAATGGTT
s caePb3.Scfld02_0      2417606 213 +  4147112 ------------------------GTATGTTTGCAATCTTATCCCATG---AAACAATATGTA----------AGATTTCATTTATTAAAGCTGTAGACGCCTTATGATTTGAAATACATTAACTCAAGGAACTTATTCCAATGAAACCACAAGC-TCACTGTATGCGGCGAGATCTGTTCATAAGTCATT-----CAAATTTGCGGTCTCTACTATAGTAagttt------------------tttcgtgt--------ttttcctctcaattttgaatct-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   76463  39 -   375229 I
e cb4.chrX              9254280 296 + 21540570 I
e caeSp111.Scaffold630  6104201 163 + 20921866 I
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=-3564.000000
s ce10.chrX             4149760 47 + 17718866 GAAAGCTTGCGACTATTTGGAAAGACACCGTTTGAAA-----AATTCCAAAA
s cb4.chrX              9254576 51 + 21540570 ACATCTTTACTCTTCTTCCTTCAAATCCCATcaccaaaatcaaatttgctA-
i cb4.chrX              I 296 C 0
s caePb3.Scfld02_0      2417819  9 +  4147112 ------------------------------------------aATTCACAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   76463 39 -   375229 I
e caeSp111.Scaffold630  6104201 163 + 20921866 I
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=120.000000
s ce10.chrX             4149807 4 + 17718866 AATG
s caeJap4.Scaffold17084   76502 4 -   375229 AACA
i caeJap4.Scaffold17084 I 39 C 0
e caePb3.Scfld02_0      2417828 0 +  4147112 C
e cb4.chrX              9254627 0 + 21540570 C
e caeSp111.Scaffold630  6104201 163 + 20921866 I
e caeRem4.Crem_Contig0  1127630 148 -  4500979 I

a score=405389.000000
s ce10.chrX             4149811 796 + 17718866  
s cb4.chrX              9254627 865 + 21540570  
i cb4.chrX              C 0 I 82
s caeRem4.Crem_Contig0  1127778 826 -  4500979  
i caeRem4.Crem_Contig0  I 148 I 39
s caeSp111.Scaffold630  6104364 765 + 20921866  
i caeSp111.Scaffold630  I 163 I 26
s caePb3.Scfld02_0      2417828 818 +  4147112  
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17084   76506 756 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=0.000000
s ce10.chrX             4150607 25 + 17718866 AAAACGTTGGCGGATTAAAATAAGT
e caePb3.Scfld02_0      2418646 14 +  4147112 I
e caeJap4.Scaffold17084   77262  0 -   375229 C
e cb4.chrX              9255492 82 + 21540570 I
e caeSp111.Scaffold630  6105129 26 + 20921866 I
e caeRem4.Crem_Contig0  1128604 39 -  4500979 I

a score=-7970.000000
s ce10.chrX             4150632 21 + 17718866 TATGATTGAAAAGCCTGTCAA
s cb4.chrX              9255574 11 + 21540570 -TCAAAATGAAG---------
i cb4.chrX              I 82 I 14
s caeSp111.Scaffold630  6105155 12 + 20921866 AACAATGAGTAG---------
i caeSp111.Scaffold630  I 26 I 1
s caePb3.Scfld02_0      2418660 20 +  4147112 tatGATCTGTAGATAT-TCGT
i caePb3.Scfld02_0      I 14 I 1
s caeJap4.Scaffold17084   77262  6 -   375229 --TGTTCG-------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1128604 39 -  4500979 I

a score=-74829.000000
s ce10.chrX             4150653 544 + 17718866  
s cb4.chrX              9255599 315 + 21540570  
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0  1128643 398 -  4500979  
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  6105168 373 + 20921866  
i caeSp111.Scaffold630  I 1 I 24
s caePb3.Scfld02_0      2418681 370 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084   77268 267 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-11842.000000
s ce10.chrX             4151197 21 + 17718866 ------------------TCTTCCCGCCTAGAAAGCT----CA
s cb4.chrX              9255914 15 + 21540570 ------------------------GGATgagaaaatttc----
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0  1129041 13 -  4500979 ------------------------TTATcagaaaatt------
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2419051 20 +  4147112 -------------------CTTATAGAGCAGCACACT--CA--
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17084   77535 35 -   375229 AACCCGAGCCGTGGGAATAAATAGAAACCAACACG--------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6105541 24 + 20921866 I

a score=136185.000000
s ce10.chrX             4151218 449 + 17718866  
s cb4.chrX              9255938 492 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1129057 426 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  6105565 446 + 20921866  
i caeSp111.Scaffold630  I 24 C 0
s caePb3.Scfld02_0      2419079 431 +  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17084   77570 415 -   375229  
i caeJap4.Scaffold17084 C 0 I 1221

a score=6934.000000
s ce10.chrX             4151667 238 + 17718866 AGTTT---------TTGCCTCACAAAGTTCAGCATATTTCGATTCGAAAATATGATTCGA-----AAAATTGAGCGTGCCGTTTTGATATTGAGAAGAAGAAAAGCAAAAAAAGTATTTTATGTGGAGGAAGGAAAACGCAA-AAAACAGACGAACCTGTCAAAACGGCGAGGAGAACGG-GA-------------GAACGCGCGGCGAGGTCTTTTT-GGACGGTCTCGA-GCAATCAATAATCC----------TGGGAAAACAGGGGAAGAAGAGT---------------
s cb4.chrX              9256430 229 + 21540570 -GTTTGCGTCttgaagaatagaaaaagttCAACGT-------TTCCCTCATAGTTCACGCTTTACGAAAACTATTAACGCA-ATAAAAACCGCCgcga-gcaaaaaaaaa--------------gatgaagagagAAGGCAATAATAAAGTCAAACCTGTCAAAATGGCGAAAAGAACGG-AA-------------GAACG------------------GGACAGCATAGGTAGAATCAATAAATAA---------TAATGAACTGAGGGCCGACCAGTGTGGGGAAGAGTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1129483 224 -  4500979 -GTTT---------AGTGTGGAGAAAGTTCAGCAT-------TTTCTTAATTCAATagtcgagaaaaaaactattagcCCAGATAAAAATTTCGGCGGCGCAAA-------------------------------GAGGCAATAATAAACTCAAACCtgtcaaaatgaatagaagAACGG-CAAATGAAAG---GCGAACGGACTG---------TCTCGGTCAGCATTGA-GTAATCAATAACTAACG-------CGAAAAAATGGATGCGGCCGGGCCGGGGGAAGAG-GGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6106011 229 + 20921866 -AATC---------AAGCAAAAGAAAGTTCAGCGT-------TTCCGTAATTTGAGCCTT-----AAAAACTATCGGAGCGAGTAAAAACTGAGACGACGCGAAACGG------------------------------ACAATAATAAAGAAGAACCTGTCAAAATGACGAAAAGAACGGAAGGATAAATGAGAGTGAACGCACAG---------TCT-CGTCTGTCTCGA-GCAATCAATAGGCGACGACCCGTTTGAACTACGGCACACAGAAAAGAGGGGGAAGGAA-GG-
i caeSp111.Scaffold630  C 0 I 51
s caePb3.Scfld02_0      2419510 225 +  4147112 -ATTC---------AGTCAGAA-AAAGTTCAGCAT-------TTTCGTAATTTGAGCCTC-----AAAAACTATCGGCGCAGGTAAAAACTCAGACGGCGCAAATAGGC--------------------------AAAGCAATAATAGAGAGGAACCTGTC-AAACGATGAAGAGAACGG-AGAATAAATG-GACGAAATGAACGG---------TCT-CGCGTTTCTCGA-GCAATCAATA----ACCTTGCGTTTGAAATATGAAGGGGGGTAGACGGGGCAAAGAAA-GG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   77985 1221 -   375229 I

a score=-475.000000
s ce10.chrX             4151905 15 + 17718866 --------------TTGTTAGTTCAGACG
s cb4.chrX              9256659 15 + 21540570 --------------CCGTCGGTTTGTGTG
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1129707 15 -  4500979 --------------CCGAGTATCTGCGCG
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0      2419735 29 +  4147112 TGTGTGGTCCGTATTCACCTGTCTGCGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   77985 1221 -   375229 I
e caeSp111.Scaffold630  6106240 51 + 20921866 I

a score=-37952.000000
s ce10.chrX             4151920 176 + 17718866 ATGCGCAGTATCTTACGCGCA------------------------AAACACTCAATTAGTTATTGTGGTGATGA-CAAAATCATTT---------------TTTACTAGAAT---------TTGGGCTATTATATCAATTTT----------TAATGGAAGCTACaatatt-------------taa----aataattaactttaaatttGTAAATGCTA-TTAGTTA-GTTT----CATAAAAATTGCA------------ATAAAAAA-------------------
s cb4.chrX              9256688 142 + 21540570 ATGCATCACACCTTACGCGCA------------------------------------AACCGGTAACAGATGAG-AAGATACggtt---------------tttg----------------atggttttatgAAAGGAAACT----------TATAAG-------AATAAA-------------GAA----AAT--------CTcacaaattaaattttc-tttgtaa-aatt----tcaatcgatggaa------------atgaaaaa-------------------
i cb4.chrX              I 14 I 161
s caeRem4.Crem_Contig0  1129731 210 -  4500979 ATGCATCATATTTTACGCGCAATCGCCGCAGTAAGTTAGTGGACGAGTTATTAAGGTAATTACTGACGGAAAAG-AGAATATAtttagaaacttctagaagtTTGTCATATTATGACAGCTTTGtttttttGCGAGGAAATA----------TG-AAG-------AATAAA-------------TGACTGCAAT-----------GCATAATAAAACTTA-TTTgcagtattt----tttgtttgtgaaa------------AGTAATAA-------------------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  6106291 210 + 20921866 ATACGCAATATTTTACGCGCAAT---------------------GAGTCATTATT--CATCTTTGACCtactga-aataaatattg---------------ttt-----------------ttgacctactgtagaaaaacaattcttttctagaaaa-------aacacatttgtCATCGTTTTGA---CAATTGA-----ATCATTTATTAAAAAC---TGtacag-tttt----ttctctgatgaAATATATAGTTTGTGTTAGTTTTTCCTgtcgaaaatgatga
i caeSp111.Scaffold630  I 51 C 0
s caePb3.Scfld02_0      2419764 195 +  4147112 ATGCGCAATATTTTACGCGCAAT----------------------AATTATGA----------TGACGTGTAGGTCATAAACGGAC---------------TAT-----------------TCAGtgcaaagaagagaaaaa----------ggaaaa-agaggcaatatatttccaagttttttgaaagaaatttatgattttcttTTGGTCAAAACGAGTGTATGG-GTTTCGGGTTTGTTgatgaaa------------acttatttttcc------agagagtga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   77985 1221 -   375229 I

a score=4324.000000
s ce10.chrX             4152096 187 + 17718866 ACCGACAACGAGAAATATTCCTGCCCCAATATGACAAATCATTCTAGAAACTTTTATGGCATTACAAAC---------------------GGAGCAAAAAATCGAT------TTTGTTTGCTGTATGATAAGGAAACAAAA---CTGGAATGTTCTGGGAAGAAAGTTAGTA-TATC-AAAACTAGTTTTAATGT---ACCTTAAAATTAAAA---GAAATAAAG----
s caeRem4.Crem_Contig0  1129941 190 -  4500979 ---------ATTGACGATCC----------------GTCTA--CTCAATCGTTTTTTAACATCACAAGTTT--GAGGAAAAGAGAGGTCGGAGGGAAACGATCGAT-AGCAGTGTAAAAGTTGTTTGATAAGAGGAAAGAATGTCTGGACTGCATCAGTAATAAA-----CACTATCAAAAAGGTTTTATAACACTCTACATTtgaatcgaaacaagaaacaatg----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6106501 184 + 20921866 atttggaagaagaa--------------------------------aagcgtTTTGTAACATCACAAATTTGAGGGAAAGAGAAAGGTCGAAGAggaaaaatcgat-gaaagTGTACACGCGGTTTGATAAGGTTATGGAATGGTTGGCGTGCACTAGCAATAAA----GTATtatcaaaaaggtgtcaTTATAG--------TGAACTAACATCCAAAATAGGCTCGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2419959 196 +  4147112 attgaaacaaataattattC----------------AATTA---TTAATTCCTGTGTGACATCACAAGTTTTTAGGGAAAGGAAAGGTCGCGAAGCAACAATCAATAGAAGGTGTGCATGTTGCCTGATAAGACTCAGAAATGACTGGAGTGCACTAGCAATAAA----ATATTATC-GAAATGTGTTATAATTC--------TTAACCAGCATTCCAGATTAGTGCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   77985 1221 -   375229 I
e cb4.chrX              9256830 161 + 21540570 I

a score=1942.000000
s ce10.chrX             4152283 22 + 17718866 TATCTGTTGGCAATTCTAATT--A----
s cb4.chrX              9256991 28 + 21540570 TctcttcaaaacatttttaattaaaCGA
i cb4.chrX              I 161 C 0
s caeRem4.Crem_Contig0  1130131 26 -  4500979 tGTCTTTAATTCATTTTAACT--ATCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6106685 22 + 20921866 TTTCTATTGACTATTTCAATT--A----
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2420155 20 +  4147112 --TCTTTTGACTATTATAATT--A----
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold17084   77985 1221 -   375229 I

a score=-4488.000000
s ce10.chrX             4152305 29 + 17718866 ---GAAGTTAAT----TCAAACTGTTGCTTTCGGCT-
s cb4.chrX              9257019 28 + 21540570 GCGGCTTTcaat-----caatttct---ttttcgag-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1130157 31 -  4500979 ACG--TTTCAATGAAGCCAAAATTC---TCTTGGAT-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6106709 31 + 20921866 ---GATGTTGGTATAATGACACTTT---TCTCAGGAT
i caeSp111.Scaffold630  I 2 I 1
e caePb3.Scfld02_0      2420175 44 +  4147112 I
e caeJap4.Scaffold17084   77985 1221 -   375229 I

a score=219633.000000
s ce10.chrX             4152334 324 + 17718866 GGAAGCGCTTGTGTAAATACAA----------------------ATCTTCC-ACGTGAAGACTGGTTTTGGCATTTGGAAACAAAAAAAAACTGAGAGTGCGACATTACAGTCGATTATGTTTCGTTT------AGTTG-TGGCG-----------------------GCAGTTTGGC---------GC-------TTTTTTTGGAAGTGAGAT----------------------------GGGTTTTTGTAACAAAAAAAAACAAAACGAAACACTCACCGGCTCCGGATCTGAGGATCGGTTGCGACCTCGCGCTAAGCCCTTGATTGTTCCTTTTGCTTTGTCCACAATTGATTCTTTTCGCACGTAGTTTGAAGGCACAAATCCAACACTGTTTGAATCGTTCATTACCTGAAGAA
s cb4.chrX              9257049 332 + 21540570 aaaaaaagttgtgtaAACATAGAC--------------------ATCTTCCAACGTGAGGACTGGTTTTGACAGTT----ATAAGAACTATGAGAGAGTGCGAAATTATTGTCGTTTA----------------TAGTGTTGGCCAGGTTGGACGCG-----------CCAGTTTTATGcgg-attgtt-------tttttttggaagcaaAGCT--------------GTTT---TTTATTCGGTTGC-------------AACAAAATGAAACACTCACCGGCTCCGGATCTGAAGATCGGTTGCGACCTCGCGCTAAACCTTTAATTGTTCCTTTCGCTTTGTCCACAATTGATTCTTTCCGCACGTAGTTTGATGGCACGAAACCAATAGTGTTTGAGTCGTTGACCACCTACAATA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1130190 343 -  4500979 AAAGTTGGCTGTGTAAACATAGAC--------------------ATCTTCC-ACGTGAGGACTGGTTTTGACAGTT----ATAAGAACTATGTGAGAGTGCGACATTACAGTCGATTATGTTACGTTT---AGCTATTGCTGGCC--GACGGAAGCGCCCCGATGCtaccacttttttttgattttgtt-------tttgtttgggAGGAGAGt--------------------------gtgagtttt-------------aaaaaagagaaacactCACCGGCTCCGGATCCGAGGATCGGTTGCGACCTCGCGCTAAACCTTTGATTGTTCCTTTTGCTTTGTCCACAATTGATTCTTTCCGCACGTAGTTTGATGGCACAAAACCGATACTGTTCGAATCGTTGACCACctgcaa--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6106741 339 + 20921866 GCAGACGCTTGTGTAAATACGCAC--------------------ATCTTCC-ATGTGAGGACTGGTTTTCACAGTT----ATAAGAACTATGTGAGAGTGCGACATTACAGTCGATTATATTTCGTTTAGCAGCAGCTGCTGGCC--AGCGGAAGCAC----------Ccgatttcac-----tttttcgaacacttttttttggaagaataaG-----------------------ATAGTGGgtttt-------------gaataaa-gaaaCACTCACCGGCTCCGGATCTGAAGATCGGTTGCGACCTCGCGCTAAACCTTTGATTGTTCCTTTTGCTTTGTCCACAATTGATTCCTTCCGCACGTAGTTTGATGGCACAAAACCAACACTGTTCGAGTCGTTGACCAcctgga---
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2420219 316 +  4147112 AAAAACGGTTGTGTAAACACACAC--------------------ATCTTCC-ACGTGAGGACTGGTTTTGACAGTT----ATAAGAACTATGTGAGAGTGCGACATTACAGTCGATTATGTTTCGTTT------AGCTGCTGTCC--G--------------------Ccaatttatt-----tctttc-------tttttttggagggaagaa-----------------------tcgatggttttg-------------aaaaaag-gaaacactCACCGGCTCCGGATCTGAAGATCGGTTGCGACCTCGCGCTAAACCTTTGATTGTTCCTTTTGCTTTGTCCACAATTGATTCCTTCCGCACGTAGTTTGATGGCACGAAACCAATACTGTTCGAGTCGTTGACCACCTAAA---
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold17084   79206 371 -   375229 GAAAACGCTTGTGCAAACAGCGACGCAAACACAGACACTTTCATATTTTAC-ACGTGAAGACTGGTTTTGATAGTT----ATGAGAACTGTCT--GAGTGCGACATTGCCGTCTTCTC---TTCGTTCGCCGTTTCACATTGAAT-----------------------TTGGTTTGCT-----TCTCTT-------TTCTTTGAGGATAGAGACGaacgattttttttagtttcacTTTGATTTGTTTTGCTTTGAG-----GATAAATATGAACACTTACCGGCTCGATATCTGAGGATCGATTGCGACCTCGCGCGAATCCTTTGATGGTGCCTTTTGCCTTGTCCACAATTGATTCTTTCCGCACATAGTTTGATGGCACAAAGCCCACATTGTTCGTGTCATTTACTAcctggaaaa
i caeJap4.Scaffold17084 I 1221 I 1040

a score=-17630.000000
s ce10.chrX             4152658 59 + 17718866 AACGGTTTTGATCCGAGGG----AAAACAACGTTAAGTGGCTCaattta-------------tttttaaaaaaatt----------------------
s cb4.chrX              9257381 64 + 21540570 AA--------ATTTGGGGttatgaaaatgtaaaaa----tcttGGTTTGCTAACTtaacgaatttttcaaaaaatt----------------------
i cb4.chrX              C 0 I 1022
s caeRem4.Crem_Contig0  1130533 28 -  4500979 -----------------------aaaatgaccaa-------tgggtttg------------------aaaaaaatt----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107080 55 + 20921866 -----------------------aattcaattta-------taaGGGAA-------------TATCGGAAtacatttgaatgaattgctggaagaagt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2420535 40 +  4147112 -----------------------AAATTATCCAT-------TTGGGGTa-------------------aaaaaaTTCCAACG--TTTCCGG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   79577 1040 -   375229 I

a score=-16543.000000
s ce10.chrX             4152717 152 + 17718866 aaGGTTTGTAGAACACTTTTTGATTAGTAGTTTTGCTAATTGGTACCAGGATTTTTTTTTGAGATGTGGAGCAATGTCAGTGCAAGCTTT------GTTTAAATG---TTGCTAAAATGACCAACAATCATAATGAAACTCTTCAGAATTGTTTTTTGAAA--------------
s caeRem4.Crem_Contig0  1130561  86 -  4500979 ---attcatgaAA---------------------------------------------TTGGAGT------ATAAATCATTCCAGAATGG------CATAAACCATGTTTGTTTAAACG-----------------------------TTATATcgagaaaacttttcaaagaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107135  66 + 20921866 ---------gaa------------------------------------------------gaaaa------cgCTCTCCGTTCGGAGTTCGTAGTTCTGAGAATA---CTGATGAAGTG-----------------------------TTGTGTTTCGAAA--------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2420575  38 +  4147112 -----------------------------------------------------------------------CAATGTCAgtttagaatta-----------------------aaaaaa-----------------------------ttattttctgaaa--------------
i caePb3.Scfld02_0      C 0 I 124
e caeJap4.Scaffold17084   79577 1040 -   375229 I
e cb4.chrX              9257445 1022 + 21540570 I

a score=-957.000000
s ce10.chrX             4152869 4 + 17718866 TATT--
s caeRem4.Crem_Contig0  1130647 4 -  4500979 --tGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107201 4 + 20921866 TACG--
i caeSp111.Scaffold630  C 0 I 61
e caePb3.Scfld02_0      2420613 124 +  4147112 I
e caeJap4.Scaffold17084   79577 1040 -   375229 I
e cb4.chrX              9257445 1022 + 21540570 I

a score=-573.000000
s ce10.chrX             4152873 84 + 17718866 TTAATGTGCAGTCAATGTGCAAAATATGGTCGACCAAAACGTTGACTGAAAATTTTGAAAAAATTATAAATTTTTCTGGATGTT
s caeRem4.Crem_Contig0  1130651 44 -  4500979 ---------AGTTTATGT--------------------ACGTTTA-TGAAA----TGCAAA------AAGTTTCTCGGGCTACA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2420613 124 +  4147112 I
e caeJap4.Scaffold17084   79577 1040 -   375229 I
e cb4.chrX              9257445 1022 + 21540570 I
e caeSp111.Scaffold630  6107205 61 + 20921866 I

a score=-2012.000000
s ce10.chrX             4152957 75 + 17718866 TAATGAAAAGAGAAAATTGTAAATTTATATATGATGctaaaataaccaaatattatagaaaact-----gttcaaaaaat
s caeRem4.Crem_Contig0  1130695 76 -  4500979 TTATTTCAACATTCAGTTTTGATT--AGTCACCATGCCCTGCT--TTCCATATATGGACAGAATGAGTCATTTACAGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107266 57 + 20921866 TAATTATATAGTGAAGCTATAAAT---TTTATAATG---------TGaaatatttgagaaaact-----------aaaat
i caeSp111.Scaffold630  I 61 I 3
e caePb3.Scfld02_0      2420613 124 +  4147112 I
e caeJap4.Scaffold17084   79577 1040 -   375229 I
e cb4.chrX              9257445 1022 + 21540570 I

a score=-25029.000000
s ce10.chrX             4153032 223 + 17718866 tttggaacatttt---------tatttcgagtcaaaaagtggtgagaacttactaatatgtagatttccccaaaaagtcg----------ttgattaaaataaatttctcttattttaatgttctaattatgcttaa-aacattaaaatttcaat---------atagcagggaatt--gaacatgcgacagtgttttagagttctcgaaaagTGGATC---AAACTGTTTTCACATTTAACCATTAGTTTCAGTAT
s caeRem4.Crem_Contig0  1130771 185 -  4500979 ----------------------TTCTTCAAGGAAAG--------------CAGTGAGTAGTAAATTTC------TGGTTGTATTAgcatgttattttcag--aagttttgtaTCTAGAACAGTTCCTtcgaatttctaaaa----aaaaatcaattttaaagaTGTTGTCAGccgttttaattttttaata------taaatgCTGATAAAGATAAC-----AACTTTTACAAacgttt-----caaaa--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107326 132 + 20921866 gtt-------------------tttttcaggcaAAA-----------TCTTGATCATGAAACGAGT--------GAGTCA-------ATGTTGGTTTAGATGAATt--------------------------------gac----aaaattcaat------ttcatggTGTACTGAT--ATTCATTGgacc-------------------------------attttctttttactttt-----ttagtttttaaca
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2420737 190 +  4147112 GTTGTACCTTTTTCCTGAGTCACTCTCCAGGTGAAAA---------CCCATAGTTTCGTATCAGTTTC------TAGTTG-------ATGGtagttcaaa--aact-------------------------atttcc-aaC----GAATTTCAATACGAAATATGTGATTCAGAGTT-GGTTCAATTGACT------CAGACGTCG-TAAAAGTGActtcaaagtttcagtttgCCTTT-----TTAGTTTCAGTCA
i caePb3.Scfld02_0      I 124 I 3
e caeJap4.Scaffold17084   79577 1040 -   375229 I
e cb4.chrX              9257445 1022 + 21540570 I

a score=-5367.000000
s ce10.chrX             4153255 13 + 17718866 -GTTTTCCGTCAA-----T
s cb4.chrX              9258467 13 + 21540570 gttttttgaataa------
i cb4.chrX              I 1022 C 0
s caeRem4.Crem_Contig0  1130956 10 -  4500979 ---gtttagataA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107458 18 + 20921866 -ATTTCCCAACAAATACCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2420930 12 +  4147112 -ATTTTTCA------TCCC
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17084   79577 1040 -   375229 I

a score=297391.000000
s ce10.chrX             4153268 413 + 17718866  
s cb4.chrX              9258480 503 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1130966 433 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107476 423 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2420942 429 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   80617 466 -   375229  
i caeJap4.Scaffold17084 I 1040 I 17

a score=3777.000000
s ce10.chrX             4153681 12 + 17718866 ATGTTGGTAGGT
s cb4.chrX              9258983  9 + 21540570 A---TGAATGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1131399  9 -  4500979 A---TGAATGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6107899  9 + 20921866 A---TGAAGGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2421371  9 +  4147112 A---TGAATGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81083 17 -   375229 I

a score=17330.000000
s ce10.chrX             4153693 32 + 17718866 CAAAGCGTGTC---ATGAA-CGGGTTCCGGAAAG------------------------TT
s cb4.chrX              9258992 26 + 21540570 TGAAGCGTGTCAAAACAAA-CGTGTTC---------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1131408 32 -  4500979 CAAAGCGTGTC---ACGAA-CACGTTCCGGTACA------------------------TT
i caeRem4.Crem_Contig0  C 0 I 64
s caeSp111.Scaffold630  6107908 32 + 20921866 CGAAGCGTGTC---ATGAA-CGCGTTCCGGTACA------------------------TT
i caeSp111.Scaffold630  C 0 I 55
s caePb3.Scfld02_0      2421380 33 +  4147112 CGAAGCGTGTC---ACGAACCGTGTTCCGGTACA------------------------TT
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17084   81100 56 -   375229 caaagcGTGTC---GCGAA-CGGGTTCCGGAACAGAACGCTCATCTGACTTGGGGAAGTT
i caeJap4.Scaffold17084 I 17 C 0

a score=316.000000
s ce10.chrX             4153725 12 + 17718866 -TTTTTATTGATT
s caeJap4.Scaffold17084   81156 13 -   375229 TTATTTTCTGAGT
i caeJap4.Scaffold17084 C 0 I 62
e caePb3.Scfld02_0      2421413 23 +  4147112 I
e cb4.chrX              9259018  0 + 21540570 C
e caeSp111.Scaffold630  6107940 55 + 20921866 I
e caeRem4.Crem_Contig0  1131440 64 -  4500979 I

a score=-261.000000
s ce10.chrX             4153737 17 + 17718866 CGAAAGTTATGAAAAAT
s cb4.chrX              9259018  9 + 21540570 -----GCCAT---ACAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2421413 23 +  4147112 I
e caeJap4.Scaffold17084   81169 62 -   375229 I
e caeSp111.Scaffold630  6107940 55 + 20921866 I
e caeRem4.Crem_Contig0  1131440 64 -  4500979 I

a score=-3058.000000
s ce10.chrX             4153754 29 + 17718866 --------------ATTAAACTTATAGTTAGTATCAAAAATCT
s cb4.chrX              9259027 30 + 21540570 -TTCG--CGCTTCTATTCTACTACTG---------CGAAATc-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2421436 33 +  4147112 CTTCAACTGCTACTTTTTGTCTCATA---------AGAActg-
i caePb3.Scfld02_0      I 23 I 14
e caeJap4.Scaffold17084   81169 62 -   375229 I
e caeSp111.Scaffold630  6107940 55 + 20921866 I
e caeRem4.Crem_Contig0  1131440 64 -  4500979 I

a score=125.000000
s ce10.chrX             4153783 7 + 17718866 TTTTTTT--
s cb4.chrX              9259057 7 + 21540570 --tttgttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6107995 7 + 20921866 tttttgt--
i caeSp111.Scaffold630  I 55 C 0
s caePb3.Scfld02_0      2421483 7 +  4147112 ttctcat--
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17084   81169 62 -   375229 I
e caeRem4.Crem_Contig0  1131440 64 -  4500979 I

a score=-1515.000000
s ce10.chrX             4153790  8 + 17718866 TTCAGATT--------------
s cb4.chrX              9259064 21 + 21540570 -tttagttttattcTGAATCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1131504 21 -  4500979 -TTCGATTTAAATACATAACAG
i caeRem4.Crem_Contig0  I 64 C 0
s caeSp111.Scaffold630  6108002 22 + 20921866 ttcgaatacGCATAAATACCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2421490 22 +  4147112 tctgaaTTTGGATAAATACCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81169 62 -   375229 I

a score=25998.000000
s ce10.chrX             4153798 104 + 17718866 AGCA----CACAGCCGTATCAAGT-----------ATGACAAAA---------AAAGAAGAATGAAAAAGGTG------AG---ATGTGAAT---AAT------------AAGTAGCATAACGCGGGCAGC----ATTGCCTATTCAATAATACTA
s cb4.chrX              9259085 106 + 21540570 AATGCGAAGTTAACCAAAACAGAC---------------------------------GAAAGGA--AAAAATGGGTTTAGG---CTGTGAATATGAAT------------AAGTAGCGTAACACCGCCAACCAGAATTGCCTATTCAATGATACTA
i cb4.chrX              C 0 I 2260
s caeRem4.Crem_Contig0  1131525 109 -  4500979 aata-aaagagaaacaaaTCAGGTTGTTTGG---TGTGAC----------------GGTGaata--aaaagtg------ag---aagagaaTAATAAC------------AAGTAGCATAACGCCGCCAAC----ATTGACTATTCGGTAATACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6108024 106 + 20921866 AGTA----GGAAACCGAAACAGGTCGCCTGA----GTGAC----------------GACGAATG-GGAAAGtg------ag---aaatgaataatatt------------AAGTAGCATTCCGCGGACAGC----ATTGACTATTCAATGATATTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2421512 108 +  4147112 AGTA----GGAAACCGAAACAGGTTGGTAGA--GTGTGAC----------------GGTGAATA-GAAAAGTG------AG---AATAGAATAATAAT------------AAGTAGCATAACGCGGACAGC----ATTGACTATTCAATGATATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   81231 130 -   375229 ---------------AAAACATGATGGTATTATATATAACAACACGTTTTGGGAAAGGAAGGTT-TAAAAGTT------AGTGAATGTGAATAATAACGATAATAGTGAAAAGAAGCATAATGCGGAGAAT----ATTGACTATTCAAAAATATGA
i caeJap4.Scaffold17084 I 62 C 0

a score=1820.000000
s ce10.chrX             4153902 2 + 17718866 TT
s caeRem4.Crem_Contig0  1131634 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6108130 2 + 20921866 TT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2421620 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   81361 2 -   375229 TT
i caeJap4.Scaffold17084 C 0 I 570
e cb4.chrX              9259191 2260 + 21540570 I

a score=2273.000000
s ce10.chrX             4153904 37 + 17718866 TTATGGAGTTAGCAAACACA-TGAATATAGTCATAAAA
s caeRem4.Crem_Contig0  1131636 32 -  4500979 TAGTAT-----GCAAACATG-AGTACACAACcataaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6108132 33 + 20921866 TTGTAG-----ACAAACATGTTGAACACGtttgtaaaa
i caeSp111.Scaffold630  C 0 I 54
s caePb3.Scfld02_0      2421622 22 +  4147112 CTTTAG-----GTAAATATG-----------TGTAAAA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-1624.000000
s ce10.chrX             4153941 40 + 17718866 -----AGTTGGCGAGGTAAG-------------CAGGATTTTGTTAGAAGGCGTCAAG
s caeRem4.Crem_Contig0  1131668 58 -  4500979 acgtgaaaaaatgaagaatgacCAACTCTATTTCTGGTTCGTATAAAAAGAGGTAAAG
i caeRem4.Crem_Contig0  C 0 I 80
s caePb3.Scfld02_0      2421645 56 +  4147112 --AGGAGATAATGACACACACACAGCGTTTGGTCATGTTCGATTTGATGGGCATCCAG
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108165 54 + 20921866 I

a score=-391.000000
s ce10.chrX             4153981 83 + 17718866 CGAGAAAATAACTGCAGTAGTTGGGCAGATGTACTTATGAGTCAGGATGCCTTT---GAATTTTTCAGCAA-----GACGGGTGCACTTTC
s caePb3.Scfld02_0      2421701 61 +  4147112 -----AAAT-----------TTGCATAGA--------------AAGTTTCTTTTCAAGGAATTTCTAACAATTTGTGTGgggttcattttc
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108165 54 + 20921866 I
e caeRem4.Crem_Contig0  1131726 80 -  4500979 I

a score=0.000000
s ce10.chrX             4154064 2 + 17718866 GA
e caePb3.Scfld02_0      2421762 55 +  4147112 I
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108165 54 + 20921866 I
e caeRem4.Crem_Contig0  1131726 80 -  4500979 I

a score=-184.000000
s ce10.chrX             4154066 32 + 17718866 ATGGCTCAATGGGAAAATGGAAATAATTCAGA
s caeSp111.Scaffold630  6108219 18 + 20921866 AAAGCTCGAAAAGAAGAT--------------
i caeSp111.Scaffold630  I 54 C 0
e caePb3.Scfld02_0      2421762 55 +  4147112 I
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeRem4.Crem_Contig0  1131726 80 -  4500979 I

a score=-2022.000000
s ce10.chrX             4154098 19 + 17718866 TGCCTGGCTTTGGCATATA--
s caeRem4.Crem_Contig0  1131806 17 -  4500979 ttcctttctttc----aTAGC
i caeRem4.Crem_Contig0  I 80 C 0
s caeSp111.Scaffold630  6108237 15 + 20921866 -ACTTAGACATG----AAAG-
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2421762 55 +  4147112 I
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-7465.000000
s ce10.chrX             4154117 72 + 17718866 ATTACTTCCA-------GCCAAAGTACCAATA-----------GGAAACCCCACATTTCCTCTGAAAGTGCAAAATCA--GGTTTCAGGCAA----------
s caeRem4.Crem_Contig0  1131823 55 -  4500979 -TTAGATTCTAGAGAGAGCATAAAGA--A--------------AAAACGACCAAA-------------CGTGAGATGG-------CAGGTGA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6108252 70 + 20921866 ATTGCTCTCT-------GCATAAGTT--AATAAATTCTTTTGCAAACATTTCTCA-------------TGGAAAaccaactttttcaaatga----------
i caeSp111.Scaffold630  C 0 I 23
s caePb3.Scfld02_0      2421817 61 +  4147112 GTTCCGTCCT-------Gcagaagaa--agtg-----------agaaaattccga-------------aggaaaacga--------aaatgagaataagaaa
i caePb3.Scfld02_0      I 55 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-1289.000000
s ce10.chrX             4154189 26 + 17718866 ATTTTATTTGCGCCTGTAAGCATTTC
s caeRem4.Crem_Contig0  1131878 14 -  4500979 ------------ATCACGAGGGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2421878 10 +  4147112 ----------------aaaaaacatc
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108322 23 + 20921866 I

a score=-2980.000000
s ce10.chrX             4154215 89 + 17718866 CAAATGGGGAAAATCACGCAAATGGGGAAAGTTTTAGTT--AGGATTG--------------TAAGGCCTTTATTGAA-AAT-----ATATTGATACTTCTGGATTTAATG
s caeRem4.Crem_Contig0  1131892 53 -  4500979 ----------------------------------TGAAT-----TCCG--------------GAAGAACCTGGGCAGACGATGTCCCAGAAATGCACTTCTGAATC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6108345 93 + 20921866 --------CAAGTGCAGGCGAATCAcgagaattctgaat-----ctttgagcctagaa----gaagaaaatcaccGGA-AACGTCCGATGTTTGCACTTCTGAATCAGAAa
i caeSp111.Scaffold630  I 23 I 85
s caePb3.Scfld02_0      2421889 96 +  4147112 --------aaagGGCATGTGAACCACGAGTGCTTTGAATGACGGTTTGGATTccggaaaaagaaagaaaatgaccGGA-AACGTCTGATGCTTGCACTTCTGAAT------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-4327.000000
s ce10.chrX             4154304 88 + 17718866 TTACCCCCAAAAGTGCTAAAGTTAAGTTGTTA----TATATTTTTCAGACCTCTTTTTCCTACAAATCTAGAATAACTTTTTTCAAGCTCTG
s caeRem4.Crem_Contig0  1131945 57 -  4500979 ----CTACAGCAG------------------A----ggaattctttatttttgcactttCCAA----CTGGAAAA-----TTATATGGTCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2421985 40 +  4147112 -------CAGAAA------------------ActactgaatttttcagacctGTCCTTTCT----------------------TATG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108438 85 + 20921866 I

a score=-6546.000000
s ce10.chrX             4154392 44 + 17718866 GAAATATGATGAAAGTTTTAATTTGAAATTAATTTTTTTAGGGT----------------
s caeRem4.Crem_Contig0  1132002 41 -  4500979 CGCATGACATTGAAGATAGa---ttatagtttttctttcagagc----------------
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold630  6108523 27 + 20921866 GAAATACTAAAAAGGATCGA-------------------AGAGCA--------------T
i caeSp111.Scaffold630  I 85 C 0
s caePb3.Scfld02_0      2422025 31 +  4147112 ----------GGAGAATAGA-------------------TGAGCAGAATTTGTCTGGGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-457.000000
s ce10.chrX             4154436 34 + 17718866 CTCCTACAAACTTATATACTTATATACCGTTTTT
s caeSp111.Scaffold630  6108550 34 + 20921866 TGAAAATTAGATAATTTTCtaactttccattttt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2422056 34 +  4147112 TGACACcatatgaatttttttagcaACAAGCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeRem4.Crem_Contig0  1132043 23 -  4500979 I

a score=-10266.000000
s ce10.chrX             4154470 85 + 17718866 ---AATTTAAATTTTGATTTTTTGATACTTGGTTGAATTATATTATAAAAGAAAATGCCTTATAATATACCTGCTTGTCGAAAAAGAA
s caeRem4.Crem_Contig0  1132066 58 -  4500979 ---AGATTACATTTAAATTTGTTG------------AATGAATTCTAGAATaacagattttttga---------------acaaagaa
i caeRem4.Crem_Contig0  I 23 I 116
s caeSp111.Scaffold630  6108584 28 + 20921866 cat------acTTTACAATAAT------------------GATGTGAAAGCA------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2422090 34 +  4147112 GAGAGAACAAATTTCCACTTGC------------------GATCctcaaaaa------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I

a score=-7100.000000
s ce10.chrX             4154555 147 + 17718866 TACCCATCGTAGTTCAATATGGCCTAGAATTTTTAGAATTTTTAAAATTTCAGTCAACACATTAAACTGCCACACTTAGAAAAAGAACAACAGGAGCGTTTGAATACATTTCTTACTGACGAGACTCCAAATTGTATTAAATTCCAC
s caeSp111.Scaffold630  6108612  45 + 20921866 TATCCA---------------------AAATCTTggggttttta-----------aaaacagaTCATTCTCAAACac----------------------------------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2422124  59 +  4147112 cttgca---------------------aaaaaagcGAGTTTC-------------AACTCACAACATTCTCAAACTCA-----------------------------ATCCATCATCAACGA-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeRem4.Crem_Contig0  1132124 116 -  4500979 I

a score=0.000000
s ce10.chrX             4154702 7 + 17718866 AATTAAG
e caePb3.Scfld02_0      2422183 0 +  4147112 C
e caeJap4.Scaffold17084   81363 570 -   375229 I
e cb4.chrX              9259191 2260 + 21540570 I
e caeSp111.Scaffold630  6108657 0 + 20921866 C
e caeRem4.Crem_Contig0  1132124 116 -  4500979 I

a score=-10797.000000
s ce10.chrX             4154709 222 + 17718866 TAATTTTAGAAATACAGATTTTCatattaaaa--ttttaattttttGGAATTTTC--CTTTTCAAACCAGAAACGTA----ATTGACTATG---CTCCATTTTGCaaaag----------aagaaaagaagaaa-------------------------aaaagaaacaaaaagcagaggaaaaacaaCCGACAATTGT----AGGCAACAATTGTTGGA-AG-----------------AGCCCCA--------TCGTTTTCTTCGTAGcacacacacacacacacacacacacaca
s cb4.chrX              9261451 217 + 21540570 -gattt--ttggaat--tttctcactttcaTTCACTATATTTTACGTTAAATTCC--TGTTCGAAATAAGGAACGAG---------TCAACAAGTCATATTTAGGGaaac----------aaaacaatgcaaaacta----------------------aaacaaa--aaaaagcaaagcaaaaacatcacaaaaacGTCTTCGCGCAACAATGGATAAG-AGGCCTCCGAATAAAAGTGGGCTCCTCCAGTGGtccgttttcttttt------------------------------
i cb4.chrX              I 2260 C 0
s caeRem4.Crem_Contig0  1132240 240 -  4500979 TAACTTCATGAGAAC--ATGTTTGGATCAATT--CTATAACTGGTTGAAAAATgcaagatttgaaaaaaaaaacaggaaggATACATCATCCaacagctttcaaaaaagttcgcTCCTTAAAAAAGATGAGGAACTAGTCAgcattttttacttttaagaaacaaaacaaaaagcaaagcaaaaaCATCA-------------GAGCAACAATGGATAAG-AG---------TAGTTGGGGGTCCCTCC---TCCTCGTTTTCTTTGTAG----------------------------
i caeRem4.Crem_Contig0  I 116 C 0
s caeSp111.Scaffold630  6108657 140 + 20921866 --------------------------tcaatt--ttgaa------------------------agaagacagACTTC----CAAGCTCATC---TCGTCTtccagaaaca----------aaaacaagca-----------------------------aaaagaaacagaaagcaatgcaaaaataggcaaa------------gcaacaaTGGATAAG-GG---------AAGCTCGGAGCCC----------TCGTTTTCTTTGTAG----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2422183 157 +  4147112 --------------------------ACAAGT--TCGGATTTG-----------------CTGAGATGAGGAACCAA----CTACTTCTTC---TCACttataagaaaca----------aaaacaagaa-----------------------------aaaagaagcataaagcaaagcaaaaacagcccaaaaaTATT---GGGCAACAATGGATAAGAAG---------AGGCTCGGAGCCC----------TCGTTTTCTTTGTAG----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   81363 570 -   375229 I

a score=111881.000000
s ce10.chrX             4154931 239 + 17718866 cacacacaTTTTCGGACAGGACAAGAGTCAATGACAAATGATGGGAATTTTC---GGTTTT---------GAATGGGGGCC-------------------AACAGGG--GCCGAAATAATGCATTGGAAT---GCGGAGAAAAGAGAGAAAAGATTGAA-GACGGATTG-----CCAAAATAATGTGCGGAAAATTTGCGAATCTG-------GCTCAAATCTCA------GACTGGAACGACGAGAT-----GGTTTGTG-----GGGGGATAGATGAAGGATTTAC-----TTGGGAATTGAAAATA-----
s cb4.chrX              9261668 251 + 21540570 cgtACACATTCTCGGACAGGACAAGAGTCAATGACAAATGATGggaatttttctggttttc---------aaatGGGGGCTAAACATG----CGTgaagaagaagggaagcaaaaataacgag-agaaat---agagagaaaacaaagaga--tttgaa-aaCGGATTG----TCCAAAATAATGTG----------gcaaatctt---------gaaaatctgagCGGCTGGCTGGA---ACGAGAT-----GGTTTTGGAGGAAGGGATAAATATGAGAAATTGGA-------GGGAGACGTCTATG-----
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1132480 229 -  4500979 CGTACACATTCTCGGACAGGACAAGAGTCAATGACAAATGATgggaattttt---ggtttt---------gaatggGGGCC-------------------AGCAAGG--GCCAAAATAATGCG-AGAAAT---AGAGGGAAAACAAAGAGA---TTGAA-GACGAATTG-----CTAAAATAATGTG----------GCAAATCTCAAATCTCGGAAAAATCCGA------GACTGGA---ACGAGAT-----GGTATTGT-----GGGATAAATATGAGATGCTTGA-----ATAGCAAACAAGAATG-----
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold630  6108797 231 + 20921866 CGTACACATTTTCGGACAGGACAAGAGTCAATGACAAATGATGGGAATTTTTC--GGTTCT---------GAATGGGGGCCCAC--------AACaaggaaaaagtg-----gaaataaTACT-Aggaata-gagagagaaaaccaGAAGA--TTTGAA-GACGGATTG-----CCAGAATAATGTG----------gcaaatctc--------aaaaaatctgc------GACTGGA---ACGAGAT-----GGTACATG-----CGGATAAATAAGGAATGCTTCA-----CTGGTAAACAACCA-------
i caeSp111.Scaffold630  C 0 I 22
s caePb3.Scfld02_0      2422340 246 +  4147112 CGTACACATTCTCGGACAGGACAAGAGTCAATGACAAATGATgggaatttttc--ggtttt---------gaatgGGGGCCAACAAggggaaaacgaagaagaagga---ccAAAATAATgtg-agaaat---tgagagaaaacaaagaga--ttTGAA-GACGGATTG-----CCAAAATAATGTG----------ccaaatctc--------gaaaaatctgA------GACTGGA---ACGAGAT-----GGTATTTG-----CGGATAAATATTAGATGCTTGAATTGGTTGGTAAACAAGCATT-----
i caePb3.Scfld02_0      C 0 I 150
s caeJap4.Scaffold17084   81933 244 -   375229 CGTACACATTCTCGGACAGGACACGACTCAATGACAAATGATAGGGATTTTT---GGCATCCGACACACAGAAAGGGTCCC-------------CAATGAGAAAGGG-----GGAAAACTGGT-GGAAATgtaacaagaaaaacgaagaga--TATGAATGACGGATTGGATTGCCAAAATAATGTG----------GCAAATCGC-----------------GA------AGCGAGA---ATAAGGTCGGTAGGTGTggt-----aaaacaataaaaaaagaatcgA-----CTCGTCCTTCTGCATTCAGAC
i caeJap4.Scaffold17084 I 570 C 0

a score=-2018.000000
s ce10.chrX             4155170 12 + 17718866 ACAACAAGATGA---
s cb4.chrX              9261939 12 + 21540570 AAAACAATCCGA---
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1132728 12 -  4500979 AGAATGTCAAGG---
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold630  6109050  9 + 20921866 ---acgTCATCG---
i caeSp111.Scaffold630  I 22 I 81
s caeJap4.Scaffold17084   82177 12 -   375229 ---GCATCAAGATTA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2422586 150 +  4147112 I

a score=-352.000000
s ce10.chrX             4155182 2 + 17718866 TC
s cb4.chrX              9261951 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1132740 2 -  4500979 AC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   82189 2 -   375229 TC
i caeJap4.Scaffold17084 C 0 I 83
e caePb3.Scfld02_0      2422586 150 +  4147112 I
e caeSp111.Scaffold630  6109059 81 + 20921866 I

a score=26.000000
s ce10.chrX             4155184 48 + 17718866 CTTTAAGGGACACTTAG-CAATCTGGTCATCGGA-----GAATA--AATATCTAGG
s cb4.chrX              9261953 54 + 21540570 TGGAGGGGGCAGCGGAGATTATCGAGTCATTTGAATAATGATGA--GATATTTACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1132742 49 -  4500979 TAA-------CGCTGAGATTATCGAGTCATTAGAATAATGATGAGCGCTATTCATC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2422586 150 +  4147112 I
e caeJap4.Scaffold17084   82191 83 -   375229 I
e caeSp111.Scaffold630  6109059 81 + 20921866 I

a score=-9723.000000
s ce10.chrX             4155232 21 + 17718866 --------GGGGCCCCC-CGTCACCAACCA---------------------------------------
s cb4.chrX              9262007 29 + 21540570 GAC------TTGCACCT-GCACA---------------------------CGG------TATTGTGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1132791 68 -  4500979 GAAGGAGGGTAACACCT-GCACATTCGTTGTTTCTGCCATCAGTTGAGTCCGGGTGGCCTAGTGTGTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6109140 22 + 20921866 --------AGAGCGCCTGGTACATACGTCT---------------------------------------
i caeSp111.Scaffold630  I 81 C 0
e caePb3.Scfld02_0      2422586 150 +  4147112 I
e caeJap4.Scaffold17084   82191 83 -   375229 I

a score=764.000000
s ce10.chrX             4155253 3 + 17718866 GCG
s cb4.chrX              9262036 3 + 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1132859 3 -  4500979 GCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6109162 3 + 20921866 GCG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2422736 3 +  4147112 GCG
i caePb3.Scfld02_0      I 150 C 0
e caeJap4.Scaffold17084   82191 83 -   375229 I

a score=59545.000000
s ce10.chrX             4155256 118 + 17718866 CGGGTATTAGC----AG--CAGCTGAAGACGAAGAAAAGT---------------AGAAGAAGT-GGACGGAGGGACACAACAACAATAACAACGTTCAACCATTACCAATTATTCTGTCT--TTT----------CTCTCACTTTCCCTTA
s cb4.chrX              9262039 108 + 21540570 CTAGTGGTCTT----AG--CAGT------AGCAGAAAACA---------------AGTAGGAGT-GGAGAGAAGG--AAGACAAC---AACATAGTTC-ATTATAGCCAATTATTATGTCTTGTTT----------CTCTAACTTTCGGTTA
i cb4.chrX              C 0 I 307
s caeRem4.Crem_Contig0  1132862 123 -  4500979 CGGGTATTAGC----AG--CAGT------agcagaagatgaagaagaaaaaaagtagaagaagt-gGACGAAGGgacacaacaac---aacaacgtTC-GCTATTACCAATTATTTTGTCT--CTT----------CTCTCACTTTCGCTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6109165 101 + 20921866 CGGGTATTAGC--------CAGT------GGAagaaaagt---------------agaagaagt-gGAC----GGacacaacaac---aacaacgtTC-ACTATTACCAATTATTCTGtct--ttt----------ctcccattttc-tttg
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0      2422739 111 +  4147112 CGGGTATTAGCAgcaag--aagt------agaagaaaagt---------------agaagaagt-gGACAGAGGgacacaacaac---aacaacgttC-ACTATTACCAATTATTCTGcct--ttt----------ctctcactttc-tatA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   82274 134 -   375229 CGAGTATTAGC----AGGCAAGT------aggaggaaaaggaaaaggaagaaga-agaagaaggaggaaggaaggGCacaataac---aacaaca-ac-accATTACCAACTATTCCGTAT--TTTGTATTCCCTATTCTCACTTTACGTTA
i caeJap4.Scaffold17084 I 83 C 0

a score=9374.000000
s ce10.chrX             4155374 35 + 17718866 CTCACTCTATTCACTATTCTGTTCACATGGAAACA
s caeRem4.Crem_Contig0  1132985 28 -  4500979 CTTACTTTA-------TCCCGTTCACATGGAAACA
i caeRem4.Crem_Contig0  C 0 I 316
s caeSp111.Scaffold630  6109267 30 + 20921866 cttgttctctt-----tttcgttcaCATGGAGACA
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2422850 19 +  4147112 ----------------TTCTGTTTACAtggaaaca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   82408 35 -   375229 CATTTTCTCATTTCGCTATCGTTTGCATAGAAGCA
i caeJap4.Scaffold17084 C 0 I 373
e cb4.chrX              9262147 307 + 21540570 I

a score=-2397.000000
s ce10.chrX             4155409 13 + 17718866 CAGAGTCTTTTCA
s caeSp111.Scaffold630  6109297  9 + 20921866 TTCTTTTTA----
i caeSp111.Scaffold630  C 0 I 194
s caePb3.Scfld02_0      2422869  6 +  4147112 ttgaga-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I
e caeRem4.Crem_Contig0  1133013 316 -  4500979 I

a score=768.000000
s ce10.chrX             4155422 64 + 17718866 ATTTACCAGTGAGTATGAATCA------TGGATGAATAAGATATCAGAAGAATGGGTGTTTGTAATACAA
s caePb3.Scfld02_0      2422875 64 +  4147112 a------aatgaatacaaaaaaaaacacaaaataaatgaaataacaGACAAATTGAAGCTCATAATAGAA
i caePb3.Scfld02_0      C 0 I 119
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I
e caeSp111.Scaffold630  6109306 194 + 20921866 I
e caeRem4.Crem_Contig0  1133013 316 -  4500979 I

a score=0.000000
s ce10.chrX             4155486 983 + 17718866  
e caePb3.Scfld02_0      2422939 119 +  4147112 I
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I
e caeSp111.Scaffold630  6109306 194 + 20921866 I
e caeRem4.Crem_Contig0  1133013 316 -  4500979 I

a score=1452.000000
s ce10.chrX             4156469 67 + 17718866 AATTAGGAAACTAAAGTTTTGGACAT---ATAGTGAATACTGGTAGAAAATGTTTATACCACTATATCAG
s caePb3.Scfld02_0      2423058 65 +  4147112 agtttagaaaatgaaatttagaatatcgcacagaaaataatg----aaaatgtata-ACTACTAAACcaa
i caePb3.Scfld02_0      I 119 C 0
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I
e caeSp111.Scaffold630  6109306 194 + 20921866 I
e caeRem4.Crem_Contig0  1133013 316 -  4500979 I

a score=-2639.000000
s ce10.chrX             4156536 74 + 17718866 AAAAAATATAGATTTAATTTATTATTCGGTCTGAAAAA----------------------------TGCAAAACT-AAAAATACTGAAGGATGGATCGGATTA
s caeSp111.Scaffold630  6109500 56 + 20921866 AAACAATATTGCTAAAAGTCAATATctactaaaaaaaa----------------------------tgaaaaact-cagAAT--------GTG----------
i caeSp111.Scaffold630  I 194 C 0
s caePb3.Scfld02_0      2423123 88 +  4147112 aagaaatgtttctttca-ttAATACCAAATAACAAATGCATACCGCATCCGATTAATCAAcaggtttgaaaaattccattat--------TTGGTTC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I
e caeRem4.Crem_Contig0  1133013 316 -  4500979 I

a score=8910.000000
s ce10.chrX             4156610 115 + 17718866 TAGTTCTACATTTCGTTGGAAAT--------AAAATTCACTGAAA----TAATCCTCTCTCTTTTCGGAATTCTTCAATAGTTTATTGTCTACTCT-----------C---CGCCA--AAGATTTCTTCCATCTTAGCAGCGA
s caeRem4.Crem_Contig0  1133329 128 -  4500979 TGGTTTCACCTCCCACCGagaacaaaatattgaaatcctCTGAAAGGTCTAAG------CTTCTTCTGCATTCTTCAATAGTTTATTGTCTGCTGTTGCTGCTGCCGCTATCGCCC--ACATTCCCTTCCTAGCGA-------
i caeRem4.Crem_Contig0  I 316 I 1
s caeSp111.Scaffold630  6109556 107 + 20921866 -----TCTCCAACCAAAGAGGA---------AAAATCCACTGAAA----TAAG------CGTTTTCGACATTCTTCTAGGATTTATTGTTT-CTAT-----------CTAGCGCCTCCACCATTCCTTCCAAGCCGCCAACGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2423211 112 +  4147112 -ACTTTCTCATtctattgaaaac--------aaaatccgCTGGAA----TAAGC----CCATATTCTACATTCTTCGATGGTTTATTGTCTGCTGA-----------Ctaaatcct---tcttttcttccaagcCAACACCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   82443 373 -   375229 I
e cb4.chrX              9262147 307 + 21540570 I

a score=-575.000000
s ce10.chrX             4156725 12 + 17718866 CCAACG--ATATTC
s cb4.chrX              9262454 10 + 21540570 CCACCGATAT----
i cb4.chrX              I 307 C 0
s caeRem4.Crem_Contig0  1133458  8 -  4500979 CAACCG--AT----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6109663  5 + 20921866 ---CCA--AT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2423323  5 +  4147112 ---CCG--AT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   82443 373 -   375229 I

a score=250575.000000
s ce10.chrX             4156737 557 + 17718866  
s cb4.chrX              9262464 667 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1133466 573 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6109668 571 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2423328 569 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   82816 581 -   375229  
i caeJap4.Scaffold17084 I 373 I 749

a score=-5693.000000
s ce10.chrX             4157294 123 + 17718866 TGCTGGCTCGGGGAAAATATAGAGAGTAAGAGGGAGGGGAGAGTAATTTAAATCTGCTCACTCTCTCT--GTCAATCCTCAAATTTTATGAAGTC---AAATGTTTTTGAACTCAAGGAAAAGT-----ATGC----------
s cb4.chrX              9263131  69 + 21540570 TGTTG---------------GGTTCGTG-----------------------AATT----------TCTCAGTCGGTTT---GGTTTTATGAGGAG--------TCTTGG---------------TGGCAAAGCTAAACTATGC
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig0  1134039  73 -  4500979 TGTTG---------------GAAGGGTGACGGGG-------------TTAAAATT----------TCT--GTCGGTTT---AGTTTTATGATGAG-AGGAATTTCTTT-----------------------ACTAGACCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6110239  83 + 20921866 TGCTG------------------GAGTGAAGGGG-------------TTAAATTT----------TCT--GTCGGTTT---AGTTTTATGATAGA-AAGAATTACTCTGG---TAGGGGTTAGTTAGAAATGC----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2423897  99 +  4147112 TGctg---tgggggggggggggtgggtGAAAGGG-------------TTAAAAAT----------TCT--GCCGGTTC---AGTTTTATGATGGAGAAGAATTACTCTGG---TTAGAAGCAGTCAGAAATGC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   83397 749 -   375229 I

a score=-5661.000000
s ce10.chrX             4157417 57 + 17718866 ------------------GGTTAGCCAGAAAGAAAAGAG-------ACTTAGAGTGCAGTCAGCTGAGCAAATGGCAATTTT
s caeRem4.Crem_Contig0  1134112 40 -  4500979 CCACAAATGCAGTCATTCCAACAGCTGTTCG----------------------------GAGAGtcag--------------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  6110322 64 + 20921866 ----------AGTC-TCTTGACAGCTGGAGgcatgaaga--aaaagaatgagagaaaaagagagagag-----agcagttta
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2423996 66 +  4147112 ----------AGTC-TTTTGACAGCTggaggcaaaaaaaagaaaagaagtagagtgagaaagagtgag-----agcagttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   83397 749 -   375229 I
e cb4.chrX              9263200 43 + 21540570 I

a score=23274.000000
s ce10.chrX             4157474 107 + 17718866 GAAAAGAAG--AAGAGAAAGTGCTTGAAATAG-C-AGGT--GCCTAGAATTTTTAGGTGTCGGTG--GCTGTAGCAACCGGCTAGTAAGTGTG----------------------------GCAGCTGTAGAGAGA-----CGCATAC----------
s cb4.chrX              9263243 114 + 21540570 aggaaaaag--aaaagtaagTGCTGGGAATAACTGAGGTAAGAAGAAAATAATAAGGTGTTGGTTG-GCTGTGGCAACCAGACGGAAAGTGTG---------------------------CCAACGGGGTAAGAAAA----CGCACAC----------
i cb4.chrX              I 43 I 558
s caeRem4.Crem_Contig0  1134155 128 -  4500979 aagaaagaa--agaagtaaGTGCTTTGAATAG-TGGGGT--GCCAATAATTCTTAGGTGTCGGTGGTGCTGTGGCAACGA-ACCAAAAATGTG------GGAGAAAAGGGA----GACCTCACACGTGCTGAGAAAA----CACGCAC----------
i caeRem4.Crem_Contig0  I 3 I 2
s caeSp111.Scaffold630  6110386 134 + 20921866 --gaaagagaCGAGGGTAAGTGCTTGAAATAG-T-GGGT--GCCTATAATTCTAAGGTGTCGGTG--GCTGTGGCAACCT--------ATGTGCCAT--GCCAAAAAGCGATGACGACCGCGCACGTGCCAAGAAAACATGGACACTCGTA------C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2424062 144 +  4147112 --gaaagaa--gagagtaagtGCTTGAAATAA-CGGGGC--GCCTATAATTCTAAGGTGTCGGTG--GCTGTGGCAACCC-GCACAAAATGTGCTACGGGAGAAAAGACGATGACGACCGCCCATGTGCTAAGAAAA----AACATGCATATGCATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   83397 749 -   375229 I

a score=-49579.000000
s ce10.chrX             4157581 147 + 17718866  
s caeRem4.Crem_Contig0  1134285 436 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6110520 316 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2424206 428 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   83397 749 -   375229 I
e cb4.chrX              9263357 558 + 21540570 I

a score=1674.000000
s ce10.chrX             4157728 43 + 17718866 TTTCATCACTAGACTAACAAAACCAGTGTTGCCT---------------TTATGAGAG
s caeRem4.Crem_Contig0  1134721 29 -  4500979 TTTCTC------------AAGACCAACATTACGT---------------TCAAAAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6110836 31 + 20921866 TTTCTT------------ATTACTAACATCACTT---------------TCCAAAAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2424634 31 +  4147112 TTTCCT------------AATACTAACATTACGT---------------TCAAAAGGG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084   84146 54 -   375229 TCTCATCAGAAAGCTCACAATGCTAACATTACGTCGTTTATGTTATGGGTTAGG----
i caeJap4.Scaffold17084 I 749 C 0
e cb4.chrX              9263357 558 + 21540570 I

a score=157286.000000
s ce10.chrX             4157771 420 + 17718866  
s cb4.chrX              9263915 502 + 21540570  
i cb4.chrX              I 558 C 0
s caeRem4.Crem_Contig0  1134750 435 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6110867 431 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2424666 429 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084   84200 450 -   375229  
i caeJap4.Scaffold17084 C 0 I 235

a score=3528.000000
s ce10.chrX             4158191 10 + 17718866 CCTAATCATA
s cb4.chrX              9264417  7 + 21540570 ACCA---ATA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1135185 10 -  4500979 CCTAACCATA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6111298 10 + 20921866 TCTAATCATA
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0      2425095 10 +  4147112 CCTAATAATA
i caePb3.Scfld02_0      C 0 I 315
e caeJap4.Scaffold17084   84650 235 -   375229 I

a score=-5687.000000
s ce10.chrX             4158201 50 + 17718866 TAAAGTTACTAGATT-ATATCCGATTGATACGGA------TTTTAAATGCAACAAAA----
s cb4.chrX              9264429 13 + 21540570 TTTGTTTGTAAAC------------------------------------------------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1135200 57 -  4500979 TGAAGGTGCAACTGCGAAATTCAATTaacacgaaat----tttgaagtacatgaaacaaga
i caeRem4.Crem_Contig0  I 5 I 128
s caeSp111.Scaffold630  6111311 46 + 20921866 TGAGATTACAACTGC-AAATCCAATTAACACGAAATTTGATTTGGAA--------------
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_0      2425105 315 +  4147112 I
e caeJap4.Scaffold17084   84650 235 -   375229 I

a score=1197.000000
s ce10.chrX             4158251 10 + 17718866 TGTGTAGTAG
s cb4.chrX              9264442 10 + 21540570 TGTGAATTCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6111357 10 + 20921866 TGTAGAGTAG
i caeSp111.Scaffold630  C 0 I 160
e caePb3.Scfld02_0      2425105 315 +  4147112 I
e caeJap4.Scaffold17084   84650 235 -   375229 I
e caeRem4.Crem_Contig0  1135257 128 -  4500979 I

a score=-6006.000000
s ce10.chrX             4158261 892 + 17718866  
s cb4.chrX              9264452 645 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2425105 315 +  4147112 I
e caeJap4.Scaffold17084   84650 235 -   375229 I
e caeSp111.Scaffold630  6111367 160 + 20921866 I
e caeRem4.Crem_Contig0  1135257 128 -  4500979 I

a score=-3928.000000
s ce10.chrX             4159153  90 + 17718866 ATTTTG--TCAGTTA--GCAATTTAT----CAA--TTAAACAAATGCCAACTGAGACATAAAAAA---------AACT---TCAATGTCCAACGAGAGTCAAAAGTCAACAC
s cb4.chrX              9265097  98 + 21540570 attttgaattttcggcttCAAAATATACCACAAAGCGCAGTGAcccatttcta------aaaaaactgtttcaaaact---tt--tgatagACAAAA---AGGAACCGAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1135385 101 -  4500979 actttg--tcaGTAGCTGCAACTTGT----TAAGATTCAGAAATTACTTTTTACCAATTGAAACACTACTGTTGAATTCTATC--TCGTCTACGAGA---AAAACTCGACtg
i caeRem4.Crem_Contig0  I 128 C 0
e caePb3.Scfld02_0      2425105 315 +  4147112 I
e caeJap4.Scaffold17084   84650 235 -   375229 I
e caeSp111.Scaffold630  6111367 160 + 20921866 I

a score=68648.000000
s ce10.chrX             4159243 314 + 17718866 -----------------TCAGAAAAAGGAAA--GATGAAAATGAAAGGAACATTCGAACAAATTGGGGACATGTGATGTGATCTAACTCCTT-TTATAAATCAAAAGG-GAACTAATGAGATTTC--ATGACTGTCTACGTTCC---------------TAAAACACGGTGGAAAAAACAATGAAAAGACGTTCCTATCCGATTTCACGCCTTC------TCGTCAG-----CACTGACCTCTTTTTT-----TCCAACACATAGAACAAATTACGC--AAACTAA-TCCTCCCCGATTTCGTCACCAACCACACAAT-GGCCCTATT---GA-------AGACGTTTTAAAAGG--------------GCCAA-------AATGT----------GTTCCTATCGCTGTTAG
s cb4.chrX              9265195 329 + 21540570 ACACTGAA---------TGAGAACATGCGGA------AAGTGTAAACTAGGA---------------GAAACATGATGTGATTCGACTTATC-------------AAG-GAACTAACGAC-------CCGACTGTCTGTTCCTCCCC---TCCGCAACCTAAAAAACtgtcgaaaattgaagaatacGACGTTCCTATCCGATTTCACGCCTTCTTCTCATCATCAGCACCACACtgacctcttttttttcaaataaacacATCGAACAAATTACGCAAAAACTAA-TCCT-TCCGATTTTGTCA-CCATT---CAAT-GACCCTatt---ggaaaaagaagacgttctgAGGAG---------TC--TGCCAAGGATAGGATCGC------CGTTCTACC--GCCATGTT-T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1135486 321 -  4500979 ---ttaaa---------tcaaaaaatctagaTCAATGCAATAGGAACTAAGAATG---------GAGAAAATGTGATGAGATTAGACTTATC------AAGGAGAAAG-GAACTAATGA--------CCGTCTGTGTCTGTCTacccatttcaaaaaagtcaaaaaagggaagaaggagaagaacgCGATGTTCCTATCCGATTTCACGCCTTC------TCATCAG-----CGTTGACCTCTTTCTC----AAAACACACATAGAACAAATTACGC--AAACTAA-TCCT-TCCGATTTTGTCA-CCATCACACAAT-GACCCTATT---GG-------AGACGTTTTGAAGGG---------TCTGTGCCAA-------ATTTT------CATCGTTCC--TCCATGTT-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6111527 324 + 20921866 ---ttagaaaaagttattttaaaacttgaga------aaaagttaaaGAGGGTTC-------CGGCAGCCGCGTGATGTGATTAGATATata---------gaagaagtgaaagaaagaaat-----cagacAGTCTACTCCTA------TAAAAAGTGTCGAAAC-------ATGGAGAAGAACACGGCGTTCCTATCCGATTTCACGCCTTC------TCATCAG-----CGCTGAcctctttttc-------aaacacACCGAACGAATTACGC-GAAgctaattttt-tccgattttgtCACCCATTACACAATCGACCCTATTGGAGG-------AGATGTTTTGGAGAAGGTG-----TC--TGCCAA-------ATTTCTCGCCTCATCGTTC----CTCTATT-T
i caeSp111.Scaffold630  I 160 C 0
s caePb3.Scfld02_0      2425420 322 +  4147112 -----------------tcagaaactaaaga------aaacaaaaagaaagaatt---------gaagacaCTTGATTCGATCAGAAACAGACTTATCAAGGAAGAAG-GAACTAATGAGATTTGTCTGGACTGTCTGTTTcta------acaaaaagttgaaaaa-------gaaaataagaacaCGACGTTCCTATCCGATTTCACGCCTTC------TCATCAG-----CACTGACCTCTTTTTC-------AAACACATAGAACAAATTACGC--AAACTAA-TCCT-TCCGATTTTGTCA-CCATCACACAAT-GACCCTATT---GG-------AGATGTTTTGAAGGAGGTGGtctttc--tgccaa------tttttcTCGCCTCATCGTTCA--TCTCTGTT-T
i caePb3.Scfld02_0      I 315 C 0
e caeJap4.Scaffold17084   84650 235 -   375229 I

a score=15972.000000
s ce10.chrX             4159557 15 + 17718866 TGGCTTTGTCAACAT
s cb4.chrX              9265524 14 + 21540570 TGTCTATGTC-ACAT
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1135807 15 -  4500979 TGCCTATGTCAACAT
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold630  6111851 15 + 20921866 TGCCTATGTCAACAT
i caeSp111.Scaffold630  C 0 I 13
s caePb3.Scfld02_0      2425742 15 +  4147112 TGCCTATGTCAACAT
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold17084   84885 15 -   375229 TGCCTATGTCAACAT
i caeJap4.Scaffold17084 I 235 C 0

a score=-3840.000000
s ce10.chrX             4159572 25 + 17718866 -TTTCTCACGGGGGCACGCACACACA-
s cb4.chrX              9265551  5 + 21540570 -TTGGT---------------------
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0  1135841  5 -  4500979 -TTGGT---------------------
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold630  6111879  5 + 20921866 -TTGGT---------------------
i caeSp111.Scaffold630  I 13 C 0
s caeJap4.Scaffold17084   84900  7 -   375229 CTTCAT--------------------T
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2425757 18 +  4147112 I

a score=40556.000000
s ce10.chrX             4159597 46 + 17718866 TTT----TGTCAGGGATTATC----AACAAAATAGGATTATTC--GAGCAAAAGTG
s cb4.chrX              9265556 54 + 21540570 TTTTGTGTGTGTGGGATTACGGGAAGGTAAAATAGGATTATTC--GAGCACAAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1135846 46 -  4500979 TTT----TGTGTAGGATTATG----GGTAAAATAGGATTATTC--GAGCAAAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6111884 48 + 20921866 TTT----TGTGAAGGATTACG----GGTAGAATAGGATTATTCGAGAGCAAAAGTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2425775 46 +  4147112 TTT----TGTAGAGGATTACG----GGTAGAATAGGATTATTC--GAGCAAAAGTG
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17084   84907 45 -   375229 CTC----TGCGGCGGATTAC-----GGCAAAATAGGCTTATTC--GAGCAAAAGTG
i caeJap4.Scaffold17084 C 0 I 303

a score=55134.000000
s ce10.chrX             4159643 278 + 17718866 AATTAGGCATGAACAAGC---------------------GGGAAG---------TTTGCATTGT----------CGGC---CTGGGAGAGAGCGAAAAGTTGCAATGG-AATGGTCTTATGAATTCAATTTTGACCACATGCTTCAGTTGCGGC------------------ACAAAATTACATTTGA---------ACGAAGAAATGTGAACATTTGAAACGTAGAAACAAGAAGGAAAAAGTCTTTCTTCCAATTCGGTCAATCCGAATT-----------------CGCAGCA----AAAACCATTAGACCGTGAGAA---------------TG---TAAAGTTCGCCCTATCCGATTTCAGAAATTCATTCCAGCACTTTTAC
s cb4.chrX              9265610 278 + 21540570 A-----GCATGAACAAG-----AATTTTGGGT--------AGCCGCAG------TCCGTATTGTTTAATAT---TGGTCTGCTG---GAGAGCGAAATGTTGCAAGACGGATGGTTTTatgaattcaattttg-ttaCGTGTTTCTGTTCAgat----gtga---aaaaattggaaaattacaTTTGAGAATG------GAAGGGATGCGAAAA-CTGAAGCT--------------------TCTTT-------TTTAGAGAACTC--------------------TCTTTAATGGA--AAAATCATTGAAGCGTGAGAAAGGGAACCAAGGTCAAA---AGAAGTTCAACGGATCTCATTTCAG------ATTCT-GTAC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1135892 310 -  4500979 A-----GCATGAACAAGC-AAAAACTGTGACT-------GAGAAACTG------CTCGTATTGTTTAATAT---TGGT---CTG---GAGAGCGAAATGTTGCACTGC-GCTGGctttatgaattcaattttg-tcaCATGCTTCCGTTCAGAT----GTGAtgtagaaaatagaaaattaaatttgaaaataca--tCGAAGGAATGTGAAAA-CTGAAGTTCATATA--------------TCTTT----CAATTTAGTTAGTTTAGTTT-------------CATTTCTAATGGA--AAAATCATTGAGGCGTGGGAA----TACCAAGGTCATG---AAAAGTTCACCGGATCTTGTTTCAGATGATTATTCTAGTACGGATA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6111932 328 + 20921866 A-----GCATGAACAAGC-AAAAACTGTGGATGGCTGGCAGGAAGGAGGACTCTTTCGTATTGTTTAACAT---TAGT---CTG---GAGAGCGAAATGTTGCATCGG-AATAGTTTTATGAATTCAATTGTG-TCACATGTTTCCGTTCAGAC----GAGCGAataaaactggaaaattacATTTGAACATGCATTTTCTAGGAATGTTGAAA-CGGAAGCTCATCCt--------------tccttcttccatttcaaaaaattgcattt-----------------CCAAATAGAATAAAATCTTCGAAGCGTGAGAA-----ACCAAGGTCATAA--AAAGTTTAGCCGGATTCAATTACAGATGAATACTCTAGCAGCAGTAC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2425821 330 +  4147112 A----GGCATGAACAAGCGAGAAACAGTG----------AAGGAGGAGG-----TTTGTATTGTTTAATATCGGTAGT---CTG---GAGAGCAAAATGTTGCAACGG-AATGGTTTTATGAATTTAATTTTA--CACATGTTTCCGTTCAGTCGGCagagtgaaaaagaaataaaaattagattGGATTTTGCA--ACAGAGGAATGTGAGAA-AGGAAGCTCATCTA--------------TCGCGTGTTCAATTTAGAAAAGTTCAGTTACACTACTCAAATTATcccaaataga--aaaatcattGAGGCGTGGGAA-----ACTACGGTCAcgaacaaaaattgagtggATCTTATTTCAGAT------TATACTAGCATTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   84952 303 -   375229 I

a score=187182.000000
s ce10.chrX             4159921 627 + 17718866  
s cb4.chrX              9265888 667 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1136202 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6112260 600 + 20921866  
i caeSp111.Scaffold630  C 0 I 182
s caePb3.Scfld02_0      2426151 613 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084   85255 588 -   375229  
i caeJap4.Scaffold17084 I 303 C 0

a score=-2297.000000
s ce10.chrX             4160548 9 + 17718866 ---CAATTGTTT
s cb4.chrX              9266555 8 + 21540570 ---TAAATgtt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1136786 9 -  4500979 ---TAATTGCTT
i caeRem4.Crem_Contig0  C 0 I 242
s caePb3.Scfld02_0      2426768 5 +  4147112 ---TAAAT----
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084   85843 9 -   375229 CGCCCATTA---
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6112860 182 + 20921866 I

a score=60.000000
s ce10.chrX             4160557 2 + 17718866 AA
s caePb3.Scfld02_0      2426773 1 +  4147112 -G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   85852 2 -   375229 AA
i caeJap4.Scaffold17084 C 0 I 2435
e cb4.chrX              9266563 0 + 21540570 C
e caeSp111.Scaffold630  6112860 182 + 20921866 I
e caeRem4.Crem_Contig0  1136795 242 -  4500979 I

a score=-436.000000
s ce10.chrX             4160559 34 + 17718866 GAACCACCGAAATTGTTTGAGATTTTTTTGCAAA------
s cb4.chrX              9266563 29 + 21540570 -----------acattttgaaattattttttcattggaGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2426774 34 +  4147112 AAATGCGTAGGAAAAcgtgaggttttttttcaaa------
i caePb3.Scfld02_0      C 0 I 455
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e caeSp111.Scaffold630  6112860 182 + 20921866 I
e caeRem4.Crem_Contig0  1136795 242 -  4500979 I

a score=-7608.000000
s ce10.chrX             4160593 1221 + 17718866  
s cb4.chrX              9266592  822 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2426808  455 +  4147112 I
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e caeSp111.Scaffold630  6112860  182 + 20921866 I
e caeRem4.Crem_Contig0  1136795  242 -  4500979 I

a score=860.000000
s ce10.chrX             4161814 6 + 17718866 TTTTCA
s cb4.chrX              9267414 6 + 21540570 TTCTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1137037 6 -  4500979 ttgtca
i caeRem4.Crem_Contig0  I 242 C 0
e caePb3.Scfld02_0      2426808 455 +  4147112 I
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e caeSp111.Scaffold630  6112860 182 + 20921866 I

a score=-1296.000000
s ce10.chrX             4161820 21 + 17718866 --------ATAATGGAACAAATACTAATA
s cb4.chrX              9267420 11 + 21540570 AA------------------TTACTTATA
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0  1137043 29 -  4500979 aaaattgaataaatagcAACTTATTCTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113042 21 + 20921866 --------ACAATGGAACGTTTTCTAGTA
i caeSp111.Scaffold630  I 182 C 0
e caePb3.Scfld02_0      2426808 455 +  4147112 I
e caeJap4.Scaffold17084   85854 2435 -   375229 I

a score=-2402.000000
s ce10.chrX             4161841 11 + 17718866 TCTAAAAATT------A------
s caeRem4.Crem_Contig0  1137072 16 -  4500979 -TCCTAAGTT------AAAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113063 19 + 20921866 -ACTGCAGTtgcgaaaagaa---
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2426808 455 +  4147112 I
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9267431 17 + 21540570 I

a score=-2887.000000
s ce10.chrX             4161852 19 + 17718866 ATGAAAAAT--ATCAAAATTC---------
s caeRem4.Crem_Contig0  1137088 19 -  4500979 -----------CTCAGAAATTGCAGTTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113082 19 + 20921866 --gaaaaagccaTCAAAACCA---------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427263 10 +  4147112 -----------ACGAAAAGTA---------
i caePb3.Scfld02_0      I 455 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9267431 17 + 21540570 I

a score=8995.000000
s ce10.chrX             4161871 133 + 17718866 -TCAGAAAG----------TTTGGATAAA----TTTCAA------TGTTGGTTTAGACTGAACAA------TACAATGAGTGATCAGAAAACG----ATGGTCAAGTTTTCAAACGGATCAAATTTCGTT---------TCGTCGTTGAGGAAAGGTTTCACAGTGGAAATAG-------------------
s cb4.chrX              9267448 162 + 21540570 -CCAAAAAGTAGGGATTGCTTTTTCTAC-----GATCAA----------AAGCCAA---CAATAGAAACA-ACCAAGAAGTGatgagaaaaaacgaaatggTCAAGTTCTT-GGCGGATCAAATTTCTTTTCGTCTTCATCGT-ATTGATGAAA------GCGAACAAAATGGTTTTACGGGGTTGTTGG--
i cb4.chrX              I 17 I 19
s caeRem4.Crem_Contig0  1137107 168 -  4500979 -TTGAACAGTACTTGGCG-TTTTCCTACAGTTGGATCAATTCCACCGCCAGTCTAAGATCAACAGAAACA-AACGAAGAATGATGAGAAAGAA-ACATTGGGTAAGTCCTC-GATGGATCGAATTTCTTTT--------TCGT-ATTGATGAAA------ACGAACGAAATGGTTTTACGGG--TGGCGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113101 163 + 20921866 TGTAAAAGATAGAAA----TGTATCTAGA----TTTCATTGTAACTGTCAGTCTCagatcaacaaaaaaagaacgaagaagaataagaaaaaa-gaaatggtcAAGTTTTT-GAGGgatcaaatttcttt---------tctt-attgatGAAA------ACGAACGAAATGG-TTTGCGGG--GGGCGACG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427273 131 +  4147112 -GCAAAAGAT-----------TCTCT-------TTTCA-------TGTCTTCTTTAGACCAA---------AACTATccaattgttgaaaaaa-ca------caagttCAC-GATGGATCAAATTTCTTC---------TCGT-ATTGATGAAA------ACGATCGAAATGGTTTTACGGA--GGATGTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I

a score=-3436.000000
s ce10.chrX             4162004 12 + 17718866 AAAAGAACCCTA
s caeRem4.Crem_Contig0  1137275  4 -  4500979 -------CCCG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113264  8 + 20921866 ---GCTACCCG-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427404  3 +  4147112 ---ACC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9267610 19 + 21540570 I

a score=87193.000000
s ce10.chrX             4162016 440 + 17718866  
s cb4.chrX              9267629 424 + 21540570  
i cb4.chrX              I 19 I 35
s caeRem4.Crem_Contig0  1137279 427 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6113272 408 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427407 416 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I

a score=-4693.000000
s ce10.chrX             4162456 36 + 17718866 AGTGTATCTTTGCATTTTAGTGTATTCTTGTCTTGT--------
s caeRem4.Crem_Contig0  1137711 36 -  4500979 ---AACACacatcata-----tttttcttggATCTCCGGGTTGT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6113680 16 + 20921866 ---------------------TCTCACTTGCATTTCT-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427823 34 +  4147112 AATAATACTCTCCATCT---TTTCCTCTTGTCTTTCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268053 35 + 21540570 I

a score=63832.000000
s ce10.chrX             4162492 131 + 17718866 -----------GATATCTTACGTATTGTTTT-TTGAAATTTGAGCTTTAT----TCAGTGGCGTATGAATAAGTATAATG-ACAGATGT---TGGTGACAT------GTCGTCTTGTGTTACATGTTCTTTATT--CCACTTGTGGGTGGCAGCAATCT
s cb4.chrX              9268088 138 + 21540570 -----------GTTGTCCGACgtattgtttt-tcgaaatttgaaccTTAT----TCCGTTGTGTATGAATAAGTACAATGAACAGATGT---CGGTGACATGGACATGCCGTCTTGTATTTCATGGTCTCTCTT--CTACAAGTGGCTTGAAACAGTCT
i cb4.chrX              I 35 I 1359
s caeRem4.Crem_Contig0  1137747 130 -  4500979 ----------------CTTAcgtattgtttt-t-gaaattcgaaccTTATTCACTCAGTTGTGTATGAATAAGTATAATG-ACAGATGT---CGGTGACATGGAGACGGCGTCTTGTGTTACATGTTC-----T--CCACAAGTGGCTTCAATCAATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6113696 147 + 20921866 CAGATCATCCAGTTGTCTTGCGTAttgttttctcgaaatttgaaCCTTAT----TCAGTTGTATATGAATAAGTATAATA-ACATATGTTGGGGGTGACATGGAAATGCCGTCTTGTATTACATGTTC-----T--CCACAAGTGGAAAGAAACAATCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427857 131 +  4147112 TAGATC-TCCA-------Tgagtattgtttt-ttgaaatttgaacctTAT----TCAGTTGTGTATGAATAAGTATAATA-ACATATGT---------CATGGAGACGCCGTCTTGTATTACATGTTC-----TCCCCACAAGTGGATGGAAACAATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I

a score=-3181.000000
s ce10.chrX             4162623 39 + 17718866 ------G--TTGCTTGAAAGTCGATGTATTTTTGGAAAAACATTCGG
s caeRem4.Crem_Contig0  1137877 43 -  4500979 TCGCAGC--GTACTTGAAACTCTATGAG--ATAGGAAAAACGTTCAG
i caeRem4.Crem_Contig0  C 0 I 371
s caeSp111.Scaffold630  6113843 21 + 20921866 TTGACGG--ATACTTGAAAACTT------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2427988 27 +  4147112 TGGATGGATATACTTGAATATTTgcgg--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268226 1359 + 21540570 I

a score=-10354.000000
s ce10.chrX             4162662 176 + 17718866 GAAAGTAAAATCAGCATTGTGGTGGTT-------GGAAACATACGGAAAAACCAA----------TGGGATTGTAGAG-------------CTTTACCTCAAAT---------------------------CCTGAAAAATTAACGGATTAAGATATAAAAAATTAACCCGAGAACGCATTTTTAAAAAATGCACCATCAAATTATTTTGTTCA-----CAAAATGACAAACTTGTAT
s caeSp111.Scaffold630  6113864  66 + 20921866 ---ATGAAAA-------------AGTT-------GGGAA--------------------------CAGGAATACTGTA---------------TTATTACAGATATATG------------------------------------------TAATAT--------------------------------------------------------------GAAAATTGCAGCGTT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2428015 221 +  4147112 agaaagaaaa-------------agttctggaacggaaatggttgaaaaaaacaaataggaTGTCCAGGAATACAATaatcgatttcatttttttattctaattaaacgtgtctcttttttttcacaactgCGGGTGAAAGTAACTAGTCATAATATGGAAAAAGTAGTTGAAATCGAG----TAAATCAGatcttttcgttttgatttgATCACAACAGAAAACTATAGTATTGTAT
i caePb3.Scfld02_0      C 0 I 152
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268226 1359 + 21540570 I
e caeRem4.Crem_Contig0  1137920 371 -  4500979 I

a score=-2761.000000
s ce10.chrX             4162838 165 + 17718866 ACAAGAAACGATTC--AAAATTAGGATGCTTATTCACTAGCAGTGTTGTGTGGTCCTCGGCTCTTGGCGCCAGCTGAGAGCCGACAACTTGGGGTTGGCTTGCGCCGAAAGCCGAAAATTTGGGGCTTTTTCGGCTCTTACCTACTTTTACTTTTGACCAAATTCAA
s caeSp111.Scaffold630  6113930  53 + 20921866 GTGAGGAACGAATCTTAAAAATAGG---------------------------------------------------------------------------TGTACCAAAAT-------------GCTTGTTGG------------TTTTATTT--------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2428236 152 +  4147112 I
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268226 1359 + 21540570 I
e caeRem4.Crem_Contig0  1137920 371 -  4500979 I

a score=-12355.000000
s ce10.chrX             4163003 434 + 17718866 ATCATTTTTCA--------------GATTCCGCAG----------------GTCCTCAGAAACTGGTAAGAATAATAAAATTAAA----------CTACAAGCATGTTCGAAAAATATTG----AAAAGTGCAAATTACAAATAAAATAGTCTTCCATAATTATGTAATTCAGGCATGTAACTGAAATTGACTAGtataattttttatttatttttGAGTCCGTTGTTTCTCAA----ATCAGATTTTTCT---------AAACTTACTTGATAAGTCAAAAACCCCTTTTTCTACGCTCAAGCTCACAAAAAATTGTCAAAATTTTGTATGTCCTCAGAGTCAAGTGTTTGATCAAAGAAGGTATTTTCCATCTCTCTGTTTTCCAAT-TTTTTTCCTGATATTGCAAAAATGTTTGAGTTAATCTTGTGTCCCGTTTTTCCATCCCCCAAATCACATTTCAAGTAATTAGAAAAAAAAAAACGTCAGAAA
s caeSp111.Scaffold630  6113983 281 + 20921866 ---------------------------------------------------AGGCTAAAAAGCT------AAAACTAAAACTGAAGAACACGCTACCAAAAATGTAT--TATCAATGTTC--------------AGATCAAATAGCAGTCtagta-----ttttt---ttcaggaatcga----------------agaagtttt---------------------tttcgaca------------------------------------tttgACTCAAGTGCTT-----------TTgagaacgaaaaagaattttcgcAGCTTT--------TGAAGGTTTTGTTTCTGGCAAACAga-------tcctcttcttttttctcagatgctgttttgaattctaatcCTGATGTT----TATAGGCCGtctgtttttttgtcat-----------------AATGACCTGAAAA----------TCGGAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2428388 424 +  4147112 AGTATGTTTCAGTTGGCTTCATCGTGATCCCATAGACTTTACATTTTCATCCAACTGAAAACCTGTACAAAAGAGTAAGTTTGAA----ACTTTGCCGACGACTTTTTGTAtaaatttttccagtgaattggaaagaacaacaaaaaattccgtagaaagtttttcgattctgTTCTGAA----------------ATAAGTTTT-----ATCAATGGGTTCGTAATTTCAGAAGTACTgcatatctttttttcaaaaaaaagtttggtttttgagtCAAGTGTTT-----------TACAAGATGACTTTCAATAAACGCGATTCTATAAG--ATAAGGGACCTTCTTCAGGAAATcggaaa----ttccttttttttgtttttcgatgtTGTTTCCTGTTCTAATCCCACTGTT----TTGACattgtttctcattttattaTGC------------TTCAAGgaactgaaat----------tcagaaa
i caePb3.Scfld02_0      I 152 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268226 1359 + 21540570 I
e caeRem4.Crem_Contig0  1137920 371 -  4500979 I

a score=72.000000
s ce10.chrX             4163437 55 + 17718866 CAAAAAAAAACACGTCTT-----------TTGTTCTTTTTCTGCCTTTTCCTCTATTCAAAAAAAT
s caeRem4.Crem_Contig0  1138291 56 -  4500979 CAAGAAATGGCACGTCATTAAgatttatctcatttttt------ttcttcccgtttGCCATA----
i caeRem4.Crem_Contig0  I 371 C 0
s caeSp111.Scaffold630  6114264 50 + 20921866 ------------CAacattcgttttcattttgttctttctctgCTTCTTCCTGCCTGCCACA----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2428812 47 +  4147112 ------------ctgcATTCATCTGC---TAGTTCTTTTCCTGCTTCGACCTGCTGAAGACA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   85854 2435 -   375229 I
e cb4.chrX              9268226 1359 + 21540570 I

a score=91.000000
s ce10.chrX             4163492 1 + 17718866 A
s caeJap4.Scaffold17084   88289 1 -   375229 A
i caeJap4.Scaffold17084 I 2435 C 0
e caePb3.Scfld02_0      2428859 0 +  4147112 C
e cb4.chrX              9268226 1359 + 21540570 I
e caeSp111.Scaffold630  6114314 0 + 20921866 C
e caeRem4.Crem_Contig0  1138347 0 -  4500979 C

a score=221690.000000
s ce10.chrX             4163493 362 + 17718866 GATAAAAATAGTGAAACGTACTCTCTG-AATATTTGCAAAATTCAATCAACAGAC-TCAGTGTAATCCAATTATGGGCAAGTGATACCATCGGCAGA--AGAGCGACTTGAGCAC--ATT------------------------------GTTCCAT-GCCTCCCTATGCGTCTCTTCC----GCGAGGTGTTCTTG-----CTCATTTCGCTTCCTCTAGGTGT--AAGTTTTTGGCTCACGTACTTTCTT--CTCTTTTATGTTCTTCGTACCCTACCAATTATTTTAAGCGACGACAATATTACAAGAAGGCA----------CACTCTTTTACTAATTGAC--GCTC-TTCTTTCAATC-GAGGGCTTATTGCAAAACCCGGGTTCTTGATTCCCGCCT-TTCTATTATTCAGCTCGTTTTTT
s cb4.chrX              9269585 373 + 21540570 GATAAAAATAGTGAAACGTA--CTCTG-AATATTTGCAAAATTCAATCAACAAAAGGCAGTCTAATTTAATTATGGACAAGTGATACCATCGGTAA--------------AAAGCTGCTCTCGAGGCGGCCTCCTTCGTGCGGTCCCGTCGTTCCATGGCCATTCCTTCCGTCTTTTCCTTTCACGAGGTGTTCTTG-----CTCA--------GAGTTAGTTTCGACGGTGTCCTACCCGCGTACTTGTC---CCATTTTATGTTCTT--GACTCTTCCAATTATTTTAAGCGACGACAATAGA-----AAGTCTTCGTTTTGGAAGCTCTTCGACTAATTGACTTGCTCTTCCTGACCATCAAAGGACTTATCGT-AAACCcgactttgt----------t-tttt-ttattc-tctcaTTTCCT
i cb4.chrX              I 1359 C 0
s caeRem4.Crem_Contig0  1138347 373 -  4500979 GATAAAAATAGTGAAACGTA--CTCTGAAATATTTGCAAAATTCAATCAACAAAC-GCAGTGTAATTTAATTATGGCCAAGTGATACCATCGGGAG-------CGTCTTCAATACTTCTC------CAGTCGTCTTCGT-----------GTTCCAT-GCCTTCCCTTCCGTCTCTTCC-TTCACGAGGTGTTCTTG-----CTCATTTCG---GTTTTAGGTGTGTGAGTGCCCTGCAGTCGTACTTGT----CTATTTTATGTTCTT--GACTCTACCAATTATTTTAAGCGACGACAATATAACAAGAAGTCTTCGTTTCG--AGCTCTTCGACTAATTGACTTGCTC-TACTCCCTATC-GAGGGCTTATCGC-AGACCCGACTTCTTGATTCCCGCCT-TTCt-tcaat----tcacttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6114314 376 + 20921866 GATAAAAATAGTGAAACGTA--CTCTG-AATATTTGCAAAATTCAATCAACAAAC-GCAGTGTAATTCAATTATGGCCAAGTGATACCATCGGAAA---AGAGCGACTTCAACACTGAGC-CAAGGG------CGTTGT-----------GTTCCAT-GCCTTCCCTTCCGTCTCTTCC-TTCACGAGGTGTTCTTG-----CTCATTTCA---GTTTTAGGTGT----GTGCCCTACTCTAGCACTTCACTGCTCATTTTATGTTTCT--GACCCTACCAATTATTTTAAGCGACGACAATATAACAAGAAGTCTTCGTTTTT--GGCTCTTCAACTAATTGACTTGCTC-TTCTTCGTATC-GAGGGCTTATCGC-AAACCCGACTTCTTGATTCCCGCCCATTTC-CTACT----CTATTTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2428859 371 +  4147112 GATAAAAATAGTGAAACGTA--CTCTG-AATATTTGCAAAATTCAATCAACAAAC-GCAGTGTAATTCAATTATGGCCAAGTGATACCATCGGAAA---AGAGCG--------ACCGAGC-CAAGGACTCTGTCATCGT-----------GTTCCAT-GCCTTCCCTTCCGTCTCTTCC-TTCACGAGGTGTTCTTG-----CTCACTTCG---GTTTTAGGTGT----GTGTCCTGCCCTCGTACTTGCTT--CCATTTCATGTTCTT--GACCCTACCAATTATTTTAAGCGACGACAATATAACAAGAAGTCTTCGTTTCG--GGCTTTTCTACTAATTGACTTGCTC-TTCTTCCTATC-GAGGGCTTATCGC-AAACCCGACTTCTTGATTCCCGCCc-tttc-ttatt----ttattttct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   88290 321 -   375229 AATAAAAAGAGTGAAACACA--TTTCA-AG--------------ACTCGTCAAAT-GCAGTGTAACTCAATTATGAGCAAGTGATACCATCGGAGGAGTAGCGGGTCTTCACCACGCCGT------------------------------GTTCCAT-GTCTTCCTTT-CGTCTCTTCCTTACGCGAGGTGTTcttgtctttctttttctc---cttttaGGTGC----GT-----------------------AAGCCTCATGTTCTT--TACGGAGCCAATTCTTTTAAGCGACGACAATATAACGAGAAGTCTT---------CGCTCTCGCACTAATTGACTCGGTT-T-----CTATCGAAGGACTTATCGC-AAAACCGACTTCTTGATTCCCGCCC-ATTC-TTC------TCGCTTTTT
i caeJap4.Scaffold17084 C 0 C 0

a score=-1296.000000
s ce10.chrX             4163855 26 + 17718866 --TTCAACTCTTATTTTTAAAATTTT--CA
s cb4.chrX              9269958 24 + 21540570 --TTGAGTTCTCACTGCTTTAGTTCT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1138720 21 -  4500979 --ttgaa--ctcaacTCTATA-TTCT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6114690 25 + 20921866 CCCtgaa--ctcatttttcca-ttttca--
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2429230  0 +  4147112 C
e caeJap4.Scaffold17084   88611  0 -   375229 C

a score=-10018.000000
s ce10.chrX             4163881 96 + 17718866 ATTATTGCGAATATACAAAGGTAAGCTTTT-----TTCTATTAAAaaaaaccacttctatagtgccgaaatgaccaaatataataataaaacatatctaaa
s cb4.chrX              9269982 34 + 21540570 -----------------------ATTCTCT-----ATCGAT---------------------------------------TCATAGTTAGGTAGAGTTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1138741 38 -  4500979 -----------------------AGTCtct-----ttcactcaa-------------------------------aaatattaaaaccAGGTACAGT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2429230 55 +  4147112 -----------taccCAAC-TCGGTTTTCTGCTTGTTCAGCTAA------------------------------CGAACTTCAGTGAAAGGTACAGT----
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17084   88611  0 -   375229 C
e caeSp111.Scaffold630  6114715  0 + 20921866 C

a score=-8374.000000
s ce10.chrX             4163977 42 + 17718866 aagtttctgaaat-----cttttaattgccattcaagaagtgacaat
s cb4.chrX              9270016 19 + 21540570 AAGT---CGGAAT-----TTCGTTAT-----------------T---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1138779 29 -  4500979 --AT---TGAACT-----GTTtctatga-----agaaaaatgag---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   88611 23 -   375229 ----AACTGAAACCTAggtttgatatt--------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2429285  6 +  4147112 I
e caeSp111.Scaffold630  6114715  0 + 20921866 C

a score=317807.000000
s ce10.chrX             4164019 862 + 17718866  
s cb4.chrX              9270035 677 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1138808 677 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6114715 688 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2429291 696 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17084   88634 710 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=546.000000
s ce10.chrX             4164881 1 + 17718866 A
s cb4.chrX              9270712 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1139485 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   89344 1 -   375229 A
i caeJap4.Scaffold17084 C 0 I 436
e caePb3.Scfld02_0      2429987 0 +  4147112 C
e caeSp111.Scaffold630  6115403 0 + 20921866 C

a score=67.000000
s ce10.chrX             4164882  9 + 17718866 ATATAAAAA-
s cb4.chrX              9270713  9 + 21540570 gtcttgaaa-
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1139486  9 -  4500979 ATTTAGAAa-
i caeRem4.Crem_Contig0  C 0 I 50
s caePb3.Scfld02_0      2429987 10 +  4147112 CGTTTGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   89345 436 -   375229 I
e caeSp111.Scaffold630  6115403  0 + 20921866 C

a score=-25295.000000
s ce10.chrX             4164891 411 + 17718866  
s cb4.chrX              9270725 483 + 21540570  
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_0      2429997 224 +  4147112  
i caePb3.Scfld02_0      C 0 I 79
e caeJap4.Scaffold17084   89345 436 -   375229 I
e caeSp111.Scaffold630  6115403   0 + 20921866 C
e caeRem4.Crem_Contig0  1139495  50 -  4500979 I

a score=-480.000000
s ce10.chrX             4165302 93 + 17718866 GCAAAATTGAAAGAAAAAATTCCCAAAAATACAGAAATTGGCATATTTAATCAC----TACTAATTTAGTAAGAATGTTTTCAGTTGACAGGATGTA
s cb4.chrX              9271208 83 + 21540570 actttttt-------aaaattttcaaa------gtgatttgAA-ATCTGATAGCCGAGTACCAGAGTCttaaaaatggtaaaaatatgcaaaatata
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2430221 79 +  4147112 I
e caeJap4.Scaffold17084   89345 436 -   375229 I
e caeSp111.Scaffold630  6115403  0 + 20921866 C
e caeRem4.Crem_Contig0  1139495 50 -  4500979 I

a score=-2105.000000
s ce10.chrX             4165395 52 + 17718866 -----------------------CTGCGCCTTCAACAGTTTTTTTTTAAATGAACCTTCATCACAATATGTTCAA
s cb4.chrX              9271291 52 + 21540570 tacttaaaaaaaacacgtttttccTGTCTTATTGACAGGTTTGT-----------------------ATGTTGAG
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0      2430300 35 +  4147112 -----------------------CTGCAttatctgcaattttttttccaac------------caaaatg-----
i caePb3.Scfld02_0      I 79 C 0
e caeJap4.Scaffold17084   89345 436 -   375229 I
e caeSp111.Scaffold630  6115403  0 + 20921866 C
e caeRem4.Crem_Contig0  1139495 50 -  4500979 I

a score=-10660.000000
s ce10.chrX             4165447 78 + 17718866 ATTCGCATAAAAAAACATTTAT--ATGCACACAAAAATTGAACAAA--TTTGAATTTCACATCAAATTTCCAATATTAAAAG
s cb4.chrX              9271344 73 + 21540570 AAAAGCAggaaagaaatttcaaagattccgattgaaattagaaaaaagattttattgACTGGTAC---------CGTctata
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold630  6115403 56 + 20921866 --------------ATTTTCATAG---TCATTCATAATGTGTCAAAAGCCtcaatttctcagaaa---------attaGACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2430335 26 +  4147112 aaaa----aaaaatattttcat-------------------tcaaa---------------------------------aca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   89345 436 -   375229 I
e caeRem4.Crem_Contig0  1139495 50 -  4500979 I

a score=306.000000
s ce10.chrX             4165525 3 + 17718866 TTC
s cb4.chrX              9271417 3 + 21540570 att
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  6115459 3 + 20921866 TTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2430361 3 +  4147112 cct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   89781 3 -   375229 ttt
i caeJap4.Scaffold17084 I 436 C 0
e caeRem4.Crem_Contig0  1139495 50 -  4500979 I

a score=70587.000000
s ce10.chrX             4165528 101 + 17718866 ATTTTTCAGTTGGCTCTATCTACGAAGGCAAATCACTAAGTGCTGCATTTGCAGAGTATCGAAGAAAAATGTGGCATATCTGGAAGGT---------TCGTTTT--------TTGATT
s cb4.chrX              9271421 106 + 21540570 atttttcagtgggAGCCATCTATGAAGGAAAGTCCCCGAAGGCTGCATTTGCTGAGTATCGTCGGAAAATGTGGCATATCTGGAAAGT---ACGTATTCGTTT---------CTGATT
i cb4.chrX              I 1 I 78
s caeRem4.Crem_Contig0  1139545 108 -  4500979 atttttcagttggtgCAATATACGAAGGAAAATCTCTACAGGCAGCATTCGCAGAGTATCGGCGAAAAATGTGGCATATCTGGAAGgt---aatgtttcattttc-------ttgctT
i caeRem4.Crem_Contig0  I 50 I 30
s caeSp111.Scaffold630  6115462 115 + 20921866 TGATTTCAGTGGGTGCGGTTTATGAGGGAAAGTCCCTACAAGCAGCATTTGCGGAGTATCGACGGAAAATGTGGCATATCTGGAAGGT---AAATcgtaattttcaaagttcccCATC
i caeSp111.Scaffold630  C 0 I 54
s caePb3.Scfld02_0      2430364 114 +  4147112 ttttttcagttggtgCAATCTACGAAGGAAAATCCCCACAGGCTGCATTTGCTGAGTATTGCCGGAAAATGTGGCATATCTGGAAGGTATGAGGTCGTTATTTTCAAA----CTAGTC
i caePb3.Scfld02_0      C 0 I 51
s caeJap4.Scaffold17084   89784  96 -   375229 tttttgcagtcggTGCACTTTACGAAGGAAAAACTGCGAAAGCCGCATTTGCCGAATACCAACGCAAAATGTGGCATATTTGGAAGGT---AAGGTTGC-------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-10547.000000
s ce10.chrX             4165629 50 + 17718866 -AAATTTTTTCTGTTACTGTATAGAAA-----------------AATTGGT------------------------AGAAAAAAGATCGGGAA
s caeRem4.Crem_Contig0  1139683 61 -  4500979 -AAAACTGTTTAACGATTCCCGAGAAA--------------TTCAGTCATC-----GGTTTTCATTCCGTAAACTatggaa-----------
i caeRem4.Crem_Contig0  I 30 I 5
s caeSp111.Scaffold630  6115631 85 + 20921866 -gagaCCGTTTAACGACTTCTCGGAAAATTTAGAAGTACTCTTTAGTcggt-----aaattttttctcatcaacaAGGAAGCAAACCATGA-
i caeSp111.Scaffold630  I 54 C 0
s caePb3.Scfld02_0      2430529 80 +  4147112 -AAAACCGTTTAACGACtctccgaaaa------aaatactcTTCAGTCGGTTTGGATAACTACTTC----AAACAaggaacaaaacaagaa-
i caePb3.Scfld02_0      I 51 C 0
s caeJap4.Scaffold17084   89880 61 -   375229 ATATTTTGTTTGAC-ACTATGTACGTG--------------GCTATTTGGC---------------TTAGAAAATAGCTAAAAGCCGGTAA-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9271527 78 + 21540570 I

a score=3367.000000
s ce10.chrX             4165679 7 + 17718866 AATAACT
s cb4.chrX              9271605 7 + 21540570 AAAAACT
i cb4.chrX              I 78 C 0
s caeRem4.Crem_Contig0  1139749 7 -  4500979 aaaaact
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6115716 4 + 20921866 ---AACT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2430609 4 +  4147112 ---aaca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   89941 7 -   375229 AATGGCT
i caeJap4.Scaffold17084 C 0 I 476

a score=2786.000000
s ce10.chrX             4165686 20 + 17718866 AGTTTG--AATTTTCGTTCAAC
s cb4.chrX              9271612 19 + 21540570 GGTTac--aat-ttttgttcag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1139756 20 -  4500979 ggtttc--aatatttttctgag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6115720 19 + 20921866 GGTTTG--ATT-TTTGTCTAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2430613 21 +  4147112 ggtttgaaatt-tttgtctgaG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   89948 476 -   375229 I

a score=285370.000000
s ce10.chrX             4165706 574 + 17718866  
s cb4.chrX              9271631 586 + 21540570  
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0  1139776 569 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6115739 549 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2430634 562 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   90424 640 -   375229  
i caeJap4.Scaffold17084 I 476 C 0

a score=-4469.000000
s ce10.chrX             4166280 30 + 17718866 CGACGGAAAAA---------AAAAGAAAAAAGCATCGGG
s caeRem4.Crem_Contig0  1140345 35 -  4500979 CTGAAGAAGAGTTTTC----TGACGAGAAAAAGTAAAAG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  6116288 39 + 20921866 CTAAGGAAAAGCTTGCAGTTGAGTGAGAAAGGAAGTAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2431196 28 +  4147112 CTCAAGAGAG--TTGC----GAGCGAGAAAGAGA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   91064 18 -   375229 CTGAA---------------GGATGTGGAAGGG------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9272217 31 + 21540570 I

a score=89294.000000
s ce10.chrX             4166310 186 + 17718866 TTGAAAGCGTCCGGTCGTCCGGCACGTGCACTTATAATGATTTCCTC--TATGAAAAAG-------------TTGGTGTCG------AGGTAAAACCGGACAATTGAAACCAACAAAGCGATGCCGGTTAATCTGCGTGTCTCTATCC----GGTAATCTTGCATCCCTTTGT---------CCGTGACAGG-TTGAGACTCAC-A-------------------ACTAAATACTCGTCGT
s cb4.chrX              9272248 226 + 21540570 ttgaaagcgtCC------GTCGCGCGTGCACTTATGATGATTTCCTctatatgaaaaaagtttggtggTGGTTGGAGGTTG------TTGTAAAACCGGACAATTGAAATCAACAAAGCGACGCCGGTTAATCTGTGCG--TCTATTCCCTGGGTAATCTTGCATCCTCTATTTTAACTGTACCGTGTCAGATTTGAGATTTGC-AAAGGTTGTTATTTTGCAGCCTCACACAATTTGTGT
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0  1140381 191 -  4500979 TTGAAAGCGTCA------CTCGCACGTGCACTTATGATGATTTCctc---attgaaaaagtttg--------tggTGGTTG------TGGTAAAACCGGACAATTGAAATCAACAAAGCGATGCCGGTTAATCTGTGCG--TCTATCC----GGTAATCTTGCATCCACTCTCTTCTCTGTACCGTGTCAGG-TTGGGATTTAT-A-------------------CTCACATAATCGACAT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  6116327 178 + 20921866 TTGACAGCGTCA------GCTGTACATGCACTTATGA----TTTACC--TCTAGAAAAAGTTT-GTGGTG--CGGGGGTTG-----TTGGTAAAACCGGACaattgaaatcaacaaaGCGATGCCGGTTAATCTGTGCG--TCTATCC----GGTAATCTT-CCTCTCTTTCG------GTGCTGTGTCAGG-TTGAGATTCAT-------------------------AATAATTG----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2431224 181 +  4147112 ----------CG------CCTCCACGTGCACTTATAA----TTTATCTATatagaaaaagtttcatgGT----GGGGGTTG-----TTGGTAAAACCGGACAATTGAAATCAACAAAGCGATGCCGGTTAATCTGTGCG--TCTATCC----GGTAATCTTGCATCTCTCACGGCCCCTGTACCGTGTCAGG-TTGAGATTCAT-A-------------------CTCAAATAATCG----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   91082 191 -   375229 TTGAAAA--------------GCATAGGTGCTAATGATTGTCTCTTT--GGGGAAAAAAGTTTTG-------TGAAGGTTGGGACACCGGTAGGACCGGACAATTGAAATCAACAAAGCGATG-CGGTTAATCTGTCTG--TTTCTCC----GGTAATCTTTCATTCTCTCATGCCCCAAATGTGTGGCATA-TCCACTTCCATCA-------------------ACTAAATAACCGGTGT
i caeJap4.Scaffold17084 C 0 I 446

a score=9375.000000
s ce10.chrX             4166496 59 + 17718866 GTCAGTACTGTTATCCCCCGTCGGTGGATATTGTTTGAAAT--TGATGA-CGGTTTTCAAAA-
s cb4.chrX              9272474 55 + 21540570 G---AAGTTGATGGCCGTTT---TTCAAAGCAGTTTGGAACAGTTATAA-TAggtttcaaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1140572 57 -  4500979 GT--AGGTTGTTATCCCTCTCGGTTAAAATTGGTGTGAATT--TGAcga-tagtttttcaaa-
i caeRem4.Crem_Contig0  C 0 I 132
s caeSp111.Scaffold630  6116505 55 + 20921866 ----AGGTTGTTATCctctc-ttttgaatttcgtgTGAATT--TGATga-aggtttttcaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2431405 56 +  4147112 ----AGGTTGTTATCCCTCC-AATTGAAATCCGTGTGAACT--TGATGacaggtttttcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   91273 446 -   375229 I

a score=-3360.000000
s ce10.chrX             4166555 18 + 17718866 CATTACAAT---TAGTTGTTA----------------
s cb4.chrX              9272529 37 + 21540570 caatttaatCGTCGATGGTTTCAAATaggtttttttg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6116560 16 + 20921866 caatacGAA-----ACTGTTA----------------
i caeSp111.Scaffold630  C 0 I 174
s caePb3.Scfld02_0      2431461  9 +  4147112 caatatgaA----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   91273 446 -   375229 I
e caeRem4.Crem_Contig0  1140629 132 -  4500979 I

a score=-37061.000000
s ce10.chrX             4166573 699 + 17718866  
s cb4.chrX              9272566 751 + 21540570  
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0      2431470 370 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   91273 446 -   375229 I
e caeSp111.Scaffold630  6116576 174 + 20921866 I
e caeRem4.Crem_Contig0  1140629 132 -  4500979 I

a score=1030.000000
s ce10.chrX             4167272 45 + 17718866 ATATACCTTA------------------ATTCCGTGACTACCTGAGTGA-----CTCCACT-CTGAATG
s cb4.chrX              9273322 57 + 21540570 CTAAAAATTATCCATAGAAGCGTGATAGACTCTGTGAATACCTAA-CGA-----CTCTAC--CAG----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1140761 41 -  4500979 ATAAACTTTA------------------ATTCTGTGAATATCTGA-ATA-----TTTCTCAGCTG----
i caeRem4.Crem_Contig0  I 132 C 0
s caePb3.Scfld02_0      2431840 44 +  4147112 ATATACTTTA------------------ATTTTGTGAATACCTGA-TAAGATGTCTCCTCCGC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   91273 446 -   375229 I
e caeSp111.Scaffold630  6116576 174 + 20921866 I

a score=43221.000000
s ce10.chrX             4167317 229 + 17718866 TTGATTAATGAAACTCATGCACGCTACGA-------TTCCGCTCATC-TGTGAATGCTGAAA-TACGA---------CTAACTCGC-------------------CCG--TCTTACACATACCCCGTTTCATATAAATTTTTCAAATGTTTCAGCTATGAACTTTACTAATATCACGTCTTTCGATGGGAACGAAACGGAGGTTTTTGACACTTCGTGGAG--TTTATCCACCCCGAGCCAATCAACTGAAGAAGCATTCACTACGGGT-C
s cb4.chrX              9273379 250 + 21540570 TAGATTGATGATCCTCCAGCACGC----ACTCCGTGTTCAGTGCATCTTGCGAGTTTTGAGCCcacat---------ttgatttttttttttccttttctccgttccattttcttcactttttcag--tctggaatattttatcagttttctagGTATGAATTTCACAAATATCACGTTTCTTGATGATAACGTGACTGCAATCATTGATACTTCCTGGAACCTATCCAAGCAC--AGTCAATCGAC-GGATAGAATTTTTCCGC---TGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1140802 235 -  4500979 TTGATTAATGAACCTCATGCACGCTAGGACCC----TTTTGCTCATC-CGTGAATAT------CATAT---------TTTACATCTTACTCGCTTTCTCTGCCCTCCG--TTCCTCacgttttca--------aataaaattttaatgtttcagaaatgaatttcaCAAATATCACGTCGTTTAATGGAAGTATTACTGAGATTCCGGACACATCTTGGAA--TATCTCAGCTCCGAGTCAATCTTCTGAAAAGACGTTTTCTGC---T-C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6116750 227 + 20921866 ttgattgatgaaCCTCATGCACGCTAGGGTGG----CTTCG-----C-TATGCATAT------CAGAA---------TTTACTCGT------CCTTTTCCACGTTCCA--CTCCATATCTCTTCC-----GCataaattttctcaaaatttcagagatgaACTTCACAAATATAACATCTTTTGGTCAGAATGAAACAGACATATTTGACACCTCCTGGAG--TATTTCACCTCCAAGTCAATCAATTGAAAGTAGCTTCTCTGC---T-A
i caeSp111.Scaffold630  I 174 C 0
s caePb3.Scfld02_0      2431884 226 +  4147112 TTGATTTATGAACCTCGTGCACGCTAGGGCTC----TCTCATCCGTC-CGTgcatat------caaaaagttttatctTCACTCGT---------------------g--ttccttgttttcttc-----tgataCTTTCTCTCAAGGTTTCAGGTATGAACTTCACAAATATCACGTCTTTCGACGAAAATGTCACGGAAATTTTTGATACTTCCTGGAT--TGCTTCCTCTCCGAGCCAATCCTTAGAAAACTCATTCACGCT---T-T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   91273 446 -   375229 I

a score=68277.000000
s ce10.chrX             4167546 71 + 17718866 CGCATAACTATTACAATCATCATGACCAGATTGATTACGTAGCTTTTATTAAATTTATTAACACGTGAGTT
s cb4.chrX              9273629 71 + 21540570 TTCACAATTATTACAATCATCATGACCAAATAGATTATGTGACTTTCAATAAGTTTATCAACACGTGAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1141037 71 -  4500979 TGCACAACTATTATAATCATCACGATCAAATTGATTACATTACTTTTAATAAGTTTATCAATACGTGAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6116977 71 + 20921866 ATCATAATTACTATAACCATCATGATCAAATCGATtacatttcattcaataagTTTGTTAACACGTAAGTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2432110 71 +  4147112 CCCATAACTATTACAACCATCACGATCAAATAGATTATGTTACTTTCAATAAGTTTATCAACACGTGAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   91719 71 -   375229 CACATAATTACTACAATCATCTTGATCAGATTGATTATATCACATTCAATAAATTTATAAACTcgtgagtt
i caeJap4.Scaffold17084 I 446 I 32

a score=-4962.000000
s ce10.chrX             4167617 22 + 17718866 GCCTTAATTTTGAAC----TAGAAAA
s cb4.chrX              9273700  9 + 21540570 Cc-----------------gacaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1141108 11 -  4500979 TTT---------------GTacagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6117048 24 + 20921866 CCT--AACAATAGACAAGAACCAAAG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2432181  0 +  4147112 C
e caeJap4.Scaffold17084   91790 32 -   375229 I

a score=126211.000000
s ce10.chrX             4167639 344 + 17718866 TCA-GCTGAAAATTTTTTAAATTCGGCAAAAATACAATAACTCTTTTTTCAGAAGTAGCATATTCGCT--TACCCTGGGGTTCTCAACACTGACATTTTTAATTTTATTCGACTTGGTTTAACTATTTTGGGGATTATATGCAACATTTCGGTTCTGGTCGCAAATCTAGTCAATGGACGAAACAAACATGGCATTCTCAAGTGAGTT--TAAATT------------------------------CACTTTTTTTGATTTTAACG-CTT-----------------AATTTAA-------------------------------------------------TTTCAGAATCCGTCTTCTGGTGCTTTTTCTCATCCTTGTAATGACAATCACTTGTATTTTGATGACAGTGATATTTGTATTTGACTGCCTAACGAATGTAGGT
s cb4.chrX              9273709 318 + 21540570 aaa----gtaaattagTGTATCTTAAT-----------------TACTCCAGAAGCGCTAACCTAGCC--TACCCGGGCGTTCTGAACACAAGCATATTTGATTTTATACGACTCGGTCTATCAATTTTGGGAATCATTTGCAATATCTCAGTTTTGGTGGCAAATCTTATCAATGGGAGGAACAAACATGGCATCCTCAAGTGAGTC--CCATT----------------------------------GCTGGTGTATAGAAAcg-ttt-------------------tacat-------------------------------------------------tttcagaatccgacTTCTCGTATTATTCCTCACTCTCATTATGACAATTAGTTGCATCTTGATGACATTGGTGTTTGTGTTTGATTGCTTGACAGATGTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1141119 331 -  4500979 caattttgaaaaacactcCACTTTCAT----------TCATTA-TATTTTAGAAGCTCGCATTTCTTA--TATCCggagtttttgaataccaGTTTATTTGATTTTATCCGTCTTGGGGTATCTGTTCTTGGGATTATTTGCAATATCTCAGTATTGGTGGCAAACTTGGTAAATGGGAGAAACAAACATGGAATACTCAAGTAAGTT--TTAGTC------------------------------TACGCTTGACCATCAtcata--at-------------------tataa-------------------------------------------------ttttagaaTTCGATTACTTGTTTTATTCCTTATTCTGGTAATGACAATAACATGCATTTTGATGACAGTGATATTTGTATTCGATTGTTTGAcgaatgtaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6117072 335 + 20921866 CCA----AATTATTATCCCACTTTTATATTT----CATAAACC-CATTTCAGAACCAC--GTCTCTCAGTTATCCTGGTTATCTAAACACAGATATATTTAACTTCATCCGTCTGGGTGCCACTGTTTTGGGAATAGTCTCCAATATATCCATATTTGTGGCGAATCTCGTCAATGGAAGAAACAAACATGGTATTCTCAAGTCAGT--------------------------------------------------ATAAacatt-tatcaaaaatcgattccactgatataa-------------------------------------------------tttcagaatcaggCTTCTAGTattatttcttattcttgTGATGATGATAACTTGCATTCTCATGActgttatttttgttttcgactGCCTAATTGACGTGAGT
i caeSp111.Scaffold630  C 0 I 59
s caePb3.Scfld02_0      2432181 431 +  4147112 -CA----AGCTAATATggggtttcagaaaaa----tatgagtG-TTTTCCAGAACTGCTAATTTTTCA--TGGCCTGAGTTTTTGTATACAAATATATTTGACTTCGTACGGTTGGGAGTTACAGTACTGGGAATAATCTGTAATATCTCAGTTTTGGTAGCTAATTTGGTTAATGGAAAGAATAAACATGGCATtctcaagtgagtt--tttgttgatCAAAATGGCGAATTTATGCAAAAAAGATactgttttgaacaaaaact-tttccaaaatgtatttcaaaagaataacTTCCAAGTCGCCACAAGTTTCAACATTTGAGTTATagttttatttaattttcagaatccggCTTCTCGTATTGTTTCTCATACTCGTGATGACTATCACATGTATTCTCATGACAGTAATATTTGTTTTCGATTGCTTAACCGATGTGAGT
i caePb3.Scfld02_0      C 0 I 68
s caeJap4.Scaffold17084   91822 339 -   375229 ---------ttatttgttctttttttt--------aatttttg-agtttcagATCTACAAACTTCTCC--GATCCAGGGTTTCTCTACACggatatttttgattttgttcGATTAGGAGTTACAATTTTGGGAATTATTTGCAACATATGGGTATTAGTTGCCAATTTGGTAAATGGAAGAAACAAACATGGGATATTAAAgtaattttgtcattt-------------------tttaaatctgatttaatttttaatcaatactattt-------------------ttctc-------------------------------------------------ttccagaaTCCGACTtattgtattattttttattcttgtAATGACAATTACATCAATTTTTATGACGGCTATTTTTGTCTTCGATTGTCTTACGGATgtaagt
i caeJap4.Scaffold17084 I 32 C 0

a score=-1491.000000
s ce10.chrX             4167983 9 + 17718866 AAAATTATT
s cb4.chrX              9274027 7 + 21540570 --TGGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1141450 7 -  4500979 --ttttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   92161 9 -   375229 ttaattttt
i caeJap4.Scaffold17084 C 0 I 39
e caePb3.Scfld02_0      2432612 68 +  4147112 I
e caeSp111.Scaffold630  6117407 59 + 20921866 I

a score=-695.000000
s ce10.chrX             4167992 5 + 17718866 AAAGA----
s cb4.chrX              9274034 9 + 21540570 TAGAAaaga
i cb4.chrX              C 0 I 2421
s caeRem4.Crem_Contig0  1141457 5 -  4500979 gagaa----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2432612 68 +  4147112 I
e caeJap4.Scaffold17084   92170 39 -   375229 I
e caeSp111.Scaffold630  6117407 59 + 20921866 I

a score=573.000000
s ce10.chrX             4167997 114 + 17718866 CAATAATGAGTTG----------AAGGAATCGTTAGACTAACAAAAAATTAGTGTT---TTTAAAATGAAATTAAAAATTTACAATTGAAAGTAAGGCATATTGATAATATATATACATTTATATCC
s caeRem4.Crem_Contig0  1141462 107 -  4500979 gggTAAAGCTTTgtccgaaaagaaaagaaatggtTTATTGACAAACAATCATAATTCAGTTTAAACTTA----------TTAAAATTGTAATAAAAG----------ATGTATTTACACTCGTATTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2432612  68 +  4147112 I
e caeJap4.Scaffold17084   92170  39 -   375229 I
e cb4.chrX              9274043 2421 + 21540570 I
e caeSp111.Scaffold630  6117407  59 + 20921866 I

a score=0.000000
s ce10.chrX             4168111 514 + 17718866  
e caePb3.Scfld02_0      2432612  68 +  4147112 I
e caeJap4.Scaffold17084   92170  39 -   375229 I
e cb4.chrX              9274043 2421 + 21540570 I
e caeSp111.Scaffold630  6117407  59 + 20921866 I
e caeRem4.Crem_Contig0  1141569   0 -  4500979 C

a score=464.000000
s ce10.chrX             4168625 5 + 17718866 AATTC
s cb4.chrX              9276464 5 + 21540570 AATTC
i cb4.chrX              I 2421 C 0
e caePb3.Scfld02_0      2432612 68 +  4147112 I
e caeJap4.Scaffold17084   92170 39 -   375229 I
e caeSp111.Scaffold630  6117407 59 + 20921866 I
e caeRem4.Crem_Contig0  1141569 0 -  4500979 C

a score=302.000000
s ce10.chrX             4168630 2 + 17718866 AT
s cb4.chrX              9276469 2 + 21540570 AC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6117466 2 + 20921866 at
i caeSp111.Scaffold630  I 59 I 3
e caePb3.Scfld02_0      2432612 68 +  4147112 I
e caeJap4.Scaffold17084   92170 39 -   375229 I
e caeRem4.Crem_Contig0  1141569 0 -  4500979 C

a score=5.000000
s ce10.chrX             4168632 2 + 17718866 AC
s caeSp111.Scaffold630  6117471 2 + 20921866 aa
i caeSp111.Scaffold630  I 3 C 0
s caePb3.Scfld02_0      2432680 2 +  4147112 at
i caePb3.Scfld02_0      I 68 C 0
e caeJap4.Scaffold17084   92170 39 -   375229 I
e cb4.chrX              9276471 0 + 21540570 C
e caeRem4.Crem_Contig0  1141569 0 -  4500979 C

a score=1747.000000
s ce10.chrX             4168634 9 + 17718866 AAAAACGTT
s cb4.chrX              9276471 9 + 21540570 AAACACATT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold630  6117473 9 + 20921866 aaacttatt
i caeSp111.Scaffold630  C 0 I 2
s caePb3.Scfld02_0      2432682 7 +  4147112 aaa--tatt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084   92209 9 -   375229 aagaatgtC
i caeJap4.Scaffold17084 I 39 C 0
e caeRem4.Crem_Contig0  1141569 0 -  4500979 C

a score=155243.000000
s ce10.chrX             4168643 174 + 17718866 AAGATATACGTCGATCTGCAAACCCTCTTGAGCGAGCCTGAATATCACGATGAAATGTCGTTTTTGTGGAGAAACCTTGCCGATTTTCTGCTACAGCCAATGTTCGATCTACAGTCCATTATGATGATGTACATTGCGCTTGATAGATATGCCAGTCTATATGTGGTCAGTGAA
s cb4.chrX              9276481 174 + 21540570 CAGATCTATGTCGATCTTCAGCAAGTCTGGAACGAATCTCAGAAAACTGGTGAGATGGCGTTTTTGTGGCGATGTCTGGCCGATTTTCTGCTACAACCGATGTTCGATCTGCAGTCAATTATGATGATGTACATTGCGCTTGATAGATATGCTAGTCTATATGTGGTCAGCGAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1141569 174 -  4500979 CAGGTTTATGTGGATCTTCAAAAGCTATGGAGTGAATCTCAGAATCAAGATGAAATATCATTTCTGTGGAGGAACCTAGCTGATTTTTTGCTACAACCGATGTTCGATCTACAGTCAATTATGATGATGTACATTGCGCTTGATAGATATGCCAGTCTATTTGTGGTCAGCGAa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6117484 174 + 20921866 tagGTATACACAGATCTTCACAAACTGTTGaaggaaactgaaaaagacggagaaatgtcatttttatGGAGAACCTTGGCAGATTTCTTGCTACAGCCGATGTTCGATCTACAGTCGATTATGATGATGTACATCGCGCTAGATAGATATGCCAGTCTCTATGTGGTCAGTGAA
i caeSp111.Scaffold630  I 2 C 0
s caePb3.Scfld02_0      2432691 174 +  4147112 aagGTTTACGTAGaccttcaaaaactgttgactGAAAACGCAACTGATGGTGAAATGTCATTTTTATGGAGAACCCTAGCCGACTTTTTGCTACAGCCGATGTTCGATCTACAGTCAATTATGATGATGTACATTGCAATTGATAGATATGCCAGTCTTTATGTGGTCAGTGAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084   92218 174 -   375229 TAGGTCTACACGGATCTACAAAAGCTATGGAGCGAGACGCAACAAGATGATGAGATGTCTTTTGTATGGAGAAATCTAGCTGACTACCTCTTACAGCCCATGTTTGACCTGCAGTCGATTATGATGATGTATATTGCGCTTGATAGATATGCAAGTCTATTTGTGGTATGTGAA
i caeJap4.Scaffold17084 C 0 I 41

a score=5978.000000
s ce10.chrX             4168817 28 + 17718866 ACTTTG--TGAGTGTTTTGTTTATTGGAAC
s cb4.chrX              9276655 29 + 21540570 CTTTCTGCCAAgtattttg-ttattttaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1141743 28 -  4500979 cttttt--cgagtgttttgtTTATAAGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6117658 25 + 20921866 CTTTTC--TAAGTGTTTAGTTTAG---AAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2432865 22 +  4147112 CTTTTC--CAAGTGTTTTGTTTAT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   92392 41 -   375229 I

a score=131585.000000
s ce10.chrX             4168845 153 + 17718866 A----TCAACATGTTCAGGGTTACTGGCCATTCGCCGAGAATCGAAAACGTCTAGCCTACTTTCTAATTGCTCCACTGGTTTTCGCCTTCATATTGATGAGTTCTGGGATTCATTATTTGATACTACCATTCGAAAGTTTTATTTATGCCAGGTGAC
s cb4.chrX              9276684 155 + 21540570 GTTTCTTAACAAGTTCAGGGTTATTGGCCATTCGTCGAAAACCGCAAACGATTAGCATACTTTCTCATAGCGCCACTGGTCTTTGCTTTTATTTTGATGAGTCCCGgtcttcaaaactttgtccTACCATTCGAAAGTTTCATTTACGCCAGGTA--
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1141771 153 -  4500979 G----TGGGCAAGTTCAGGGTTATTGGCCATTCGTCGAAAATCGAAAGCGATTAGCATACTTCTTGATAGCGCCACTGATCTTCGCATTTATACTGATGAGTCCGGGAATTCAGCATTTCGTGTTACCGTTCGAAAGTTTCATCTATGCCAGGTATC
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6117683 157 + 20921866 GTGAATAAACAAGTTCAGGGTTATTGGCCATTTGTCGAAAATCGAAAGCGATTAGcatactttttgatagcaccCTTGATCTTTGCATTTCTGTTGATGAGTCCTGGAATTCAACACCTCGTTTTGccatttgaaagttttgtgTATGCCAGGTATC
i caeSp111.Scaffold630  C 0 I 34
s caePb3.Scfld02_0      2432887 152 +  4147112 -----TAAACAAGTTCAGGGTTATTGGCCATTCGTCGAGAATCGAAAGCGATTAGCATATTTCTTGATAGCCCCGCTGATATTTGCATTTGTCTTGATGAGTCCCGGTTTCCAACATTTTGTATTGCCTTTCGAAAGTTTTATCTATGCCAGGTATC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084   92433 153 -   375229 ----ATTAAAACTTTCAGGGTTATTGGCCATTTATTGAAAACCGGAAGAGATTAGCCTACTTTTTAATAGCTCCtttaatttttgcgtttttgctCATGAGTCCGGGAATTCAACATCTTATACTGCCATTTGAAAGTTTTCTTTACGCTAGGTAAA
i caeJap4.Scaffold17084 I 41 C 0

a score=-6705.000000
s ce10.chrX             4168998 23 + 17718866 ----------CTTACACAAGTGTTTGTA---TCAAT
s cb4.chrX              9276844 19 + 21540570 ----------ATTAGG-------TTCGAAACCCAAT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1141929 21 -  4500979 ----------tttcga-----atttttaaccCCAAT
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2433040 26 +  4147112 ----------ATCAAACCACTAATTTGAACCCCTCT
i caePb3.Scfld02_0      I 1 I 4
s caeJap4.Scaffold17084   92586 18 -   375229 TATATACGTTCTTATG-------TT-----------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6117840 34 + 20921866 I

a score=502524.000000
s ce10.chrX             4169021 674 + 17718866  
s cb4.chrX              9276863 684 + 21540570  
i cb4.chrX              C 0 I 412
s caeRem4.Crem_Contig0  1141950 655 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6117874 671 + 20921866  
i caeSp111.Scaffold630  I 34 C 0
s caePb3.Scfld02_0      2433070 659 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084   92604 653 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=183.000000
s ce10.chrX             4169695 81 + 17718866 TGTTTTTTTTTTGTTCGGATTTTTTTCTGAAATTGACAAATAGCAAACATCTTTGTAGTCTTA------------AATAATAAACTGGTTTTT--
s caeRem4.Crem_Contig0  1142605 55 -  4500979 tgttttcatattttct--------------------catATAGGAAACCGTATTGTAGTC----------------GGAATAAACTGGTTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6118545 55 + 20921866 ----tttctcatttttgtct----------------tGTATAGGTAAACGCATTGTAGTC----------------AGAATAAACTGGTTT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2433729 66 +  4147112 ----ttaataatttctgtttattttttcaa-----aagtatagGTAACTTCATTGTAGTC----------------CTGATAAACTGGTTT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   93257 67 -   375229 --------cagtttttgctT---------------AGATACCG---AATTCATCATAGTTTTATGTATAATCATTAATAATAAACTTATTT--TT
i caeJap4.Scaffold17084 C 0 I 287
e cb4.chrX              9277547 412 + 21540570 I

a score=1688.000000
s ce10.chrX             4169776 36 + 17718866 TGGTTTGTTTCAAAATAAAGACTAACAATGAATAAA
s caeRem4.Crem_Contig0  1142660 24 -  4500979 -------GATTCA---CTTGA--AACAATGAATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6118600 27 + 20921866 -------TGgaaagataaaaa--aacaataaatgaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2433795 27 +  4147112 -------TCCCAAAAGCTAAG--AACAATAAATAAA
i caePb3.Scfld02_0      C 0 I 287
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I

a score=600.000000
s ce10.chrX             4169812 2 + 17718866 GC
s caeRem4.Crem_Contig0  1142684 2 -  4500979 gc
i caeRem4.Crem_Contig0  C 0 I 261
s caeSp111.Scaffold630  6118627 2 + 20921866 gc
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2433822 287 +  4147112 I
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I

a score=81.000000
s ce10.chrX             4169814 10 + 17718866 C----ACTGGTTTT
s caeSp111.Scaffold630  6118629 14 + 20921866 ttcaaaatggtttt
i caeSp111.Scaffold630  C 0 I 123
e caePb3.Scfld02_0      2433822 287 +  4147112 I
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I
e caeRem4.Crem_Contig0  1142686 261 -  4500979 I

a score=0.000000
s ce10.chrX             4169824 616 + 17718866  
e caePb3.Scfld02_0      2433822 287 +  4147112 I
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I
e caeSp111.Scaffold630  6118643 123 + 20921866 I
e caeRem4.Crem_Contig0  1142686 261 -  4500979 I

a score=1812.000000
s ce10.chrX             4170440 72 + 17718866 GACCTTATAGTAGTTTCTTTGGAAAACTCAAAAAATTCTTACATAGCACATCTGAGCAGTGATTCCTGTACT
s caeSp111.Scaffold630  6118766 58 + 20921866 GAACTTCTTGACGTTTCgctggaaaaattcaaagtttct--------------aCGCACTGATTCCTGTACT
i caeSp111.Scaffold630  I 123 C 0
e caePb3.Scfld02_0      2433822 287 +  4147112 I
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I
e caeRem4.Crem_Contig0  1142686 261 -  4500979 I

a score=-642.000000
s ce10.chrX             4170512 11 + 17718866 AAATGTTTTAG-----
s caeRem4.Crem_Contig0  1142947 11 -  4500979 aaataTTATAA-----
i caeRem4.Crem_Contig0  I 261 C 0
s caeSp111.Scaffold630  6118824 11 + 20921866 -----TTATGTTTCGG
i caeSp111.Scaffold630  C 0 I 54
e caePb3.Scfld02_0      2433822 287 +  4147112 I
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I

a score=6914.000000
s ce10.chrX             4170523 76 + 17718866 AAAGCAT----CTAGCCTGACC-TCAGGAATCCCAAATTTTTCGCACTTTTTGACAAAAAAAAAGTGATA-----CGCGATAATGA-
s caeRem4.Crem_Contig0  1142958 68 -  4500979 -ATACGC----ATAGTTTGACCTTTTGGAATTCAGATTTCACTGCACGTTTCAAAA---------TGATA-----GGTGATATACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6118889 73 + 20921866 AATACGTAAGGGCTGACTGACC-TTTCTCATTCATATTTTGTTGCACGTTTTGAAA---------TGACA----TTGTGATATTGCG
i caeSp111.Scaffold630  I 54 C 0
s caePb3.Scfld02_0      2434109 74 +  4147112 AATACGT----GTAGCTTGACC-TTAGGAATTCATATTTCGTTGCACGTTTTGAAA--------GCGATAGCTGCTGATATATACCG
i caePb3.Scfld02_0      I 287 C 0
e caeJap4.Scaffold17084   93324 287 -   375229 I
e cb4.chrX              9277547 412 + 21540570 I

a score=58653.000000
s ce10.chrX             4170599 170 + 17718866 AACCGGTCTATTGTCCC---------TCATTATCACGCAGTCACACT--A----------------------TGAT-TTCTCAGATGGCCAGCCCA---ATTTTCAA-TTCA--------CTCCAAAACTTTGATCTCAATTCCAAAGTACTTGAACA-TTTCCCCGACTACATCCCATAGTGTCTTCGGCCATTTGCAC--CTCAGGAA-A----AAACTGTG
s cb4.chrX              9277959 195 + 21540570 aaCCGGTCTCCGCTTTCCCGTATTATG-ATTATCACGCTGTTAGACA--GACAGTCACCCTCCTCT-CAAATTAAC-TGATTTCTTGGCCTCCTCCCTACTTTTAC--CTCATCTGTTTTCTCCgaaactttgatctcaattgcAAAGTACTTGAACATCTTTCTTCAACGAATCCGATGT---------------------CTCAGAAC-Cgcataaaaaaag
i cb4.chrX              I 412 C 0
s caeRem4.Crem_Contig0  1143026 178 -  4500979 AACCGgtcttatttttcttattttccataTTATCACGCTGTCAGACA--G------TCTCACCTTT-CAAATTGAC-TTCACTGATGGTCACCCCC---ATTTTCC--CTCA----ATTTCTCCGAAACTTTGATCTCAATTGCAAAGTACTTGAACA-ATTCCTTCAACGAATCCGATGT---------------------Ctcagaat-a----aaaaaacg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6118962 193 + 20921866 AACCGGTCTCATTTTCC---------ATAATATCACGCTGTCAGACA--G------TCTCACCTCTCCACAATGACTTTTTCTGATGGCCACCCCC---GTTTTCCCTCTCA-----TTTCTCCGAAACTTTGATCTCAATTGCAAAGTACTTGAACA-ATTCCTTCTATACATGGGATGTCTTCGGCGTCCCGTCATCCgtctcagaat-a----aaaaaacg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2434183 196 +  4147112 AACCGGTCTTATTTTCCATA------ATAATATCACGCTGTCAGAAGGTG------TCTCACCTTTTTAATTTGAC-TTCTCTGATGGCCACCCCc---gttttcc--ctca-----tttctccGAAACTTTGATCTCAATTGCAAAGTACTTGAACA-ATTCCTCCAATACATGGGATGTCTTCGCCGTCCCGGCATGCacctcagaataa----aaaaaacg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   93324 287 -   375229 I

a score=270942.000000
s ce10.chrX             4170769 1199 + 17718866  
s cb4.chrX              9278154 1425 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1143204 1351 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6119155 1366 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2434379 1374 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   93611 1500 -   375229  
i caeJap4.Scaffold17084 I 287 I 49

a score=8386.000000
s ce10.chrX             4171968 31 + 17718866 ATGTTTCACATGCT---TTAGGA--------------------------CCCTAGGACCC
s cb4.chrX              9279579 55 + 21540570 ATGTTTCAGATGCC-----ATGAAACACAAGATTGAAGAGAGCGAATAGCTTTAGAACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1144555 44 -  4500979 ATACTTCACATGCC-----aggaa-----------aacagacaaaaatgcATTCGAACCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6120521 50 + 20921866 ATGTTTCAAATGCC--TTTGGAAAGCA--------GAGATGGAAAAATGCTTGATAACCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2435753 52 +  4147112 ATGTTTCACatgccttttttgaaaaca--------aacacaCAAAAATGCTTTAGAACCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   95111 49 -   375229 I

a score=101602.000000
s ce10.chrX             4171999 300 + 17718866 TATAAAACATTACAAAC-AAGTGCTTT-AGAATTTT---CTTCCTGCTTCT---------GTTGTTTTCAAA---AAGTTCAATATGCTATTTTTTAAATAAAAAATGATCGAATTAGG------GGCGCATCCCACCTTCACACCTATATACTTTGCAG----CAATCACTCAGACTAATATGTACTTCTTGGATTAATCTCTATGGGGGAAT------CAGACTGTTATTGGCATTGATAT--CACAC----ATTC--AGATTATGTTGTTTTGTACTATTTGGATCAACATCGTGACTAACTCTT-TTTGGT----CAGGAAATC-TGAAATCACTAGTTGTTT------
s cb4.chrX              9279634 281 + 21540570 TATAAAACACGGTCAATAAGGCGTTCT----TTCCT---TTTCCTGCTTTC-Tctaa----ttgtttt-------taa-----------aatgttt-tgtaAGATATGATCGAATTAGA-GCCC-TGTTCTT----GTTCC----------TCTTTGCA------AATCATT---CTTTCCATGCACTTTTTAGATTAATCTCT---AAAGAAGAGCTGACACACTGTTATT--CTCCGATAT--CACACTTGAATTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACGTGACTAACTCTACACTGATCG--CAGAGTCTC-TGAAATCACTACATGTTT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1144599 289 -  4500979 TATAAAACATTGCGAAC-AGGcgctttttgattttt---cttcctGCTTTC-AATTaaagtttgtttt-------tcattcCG------AATATTT-TGTAAGATATGATTGAATTAGACGCCA-AGCGCCcaccagtttt----------tttttgcag----caagCACTGAGACTAACATGCACTATTTGGATTAATCTCT---GGAGAAG------CAGACTGTTATT--CACTGATAT--CACAC----ATTCAGAGATTATGTTGTTTTGTACTTAATGGAATAACAACATGACTA-------ACTGATCGGACAGAGAGTCATGAAATCACTAGATGTTT------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  6120571 312 + 20921866 tataaaacattgaaaac-aggcgcttttggattttt---cttcCTGATTCCTAATTAAAGTTTGTTTTCA-----TGACCCCAAATATCATTATTTATTCGAGATATCATCGAATTAGAGACCATCGCGCCCACCCGCTTTTTTCCTG---TGTTTGCTG----CAATCACTGAGACTAACATGTCCTTTCTGGATTAATCTCT---GGAGAAG------CAGACTGTTATT--CATTGATATCACACAC----ACTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACATGACTAACGAGA-ACTGATCG--CA-AGAGTCATGAAATCACTGAATGTTT------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2435805 314 +  4147112 TATAAAACACTGCGAAC-AGgcgctttttgattttt---cctctTGCTTCTTAATTAAAGTTTGTTTTTAGCCATTAACTTCGCATCTAAATATTT-TGTAAGATATGATCGAATTAGAGACTA-AGCGCCCAcccgtttttttcc-----tgtttgcAGCAGCCAATCACTGAGACTAACATGCACTTTCTGGATTAATCTCT---GGAGAAG------CAGACTGTTATT--CACTGATAT--CACAC----ATTCAGAGATTATGttgttttgtactttttgGAATAACAACATGACTAACCATA-ACTGATCG--C--AGAGTCATGAAATCAGTAGATGTTT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   95160 229 -   375229 TATAAAGCATTGTTTGC-CGTAGTTTTTCAAGTTTCTCGTTTTTTACTTCC----------TTG-----------AGAttgca------aattgtt-------------------------------------------------------tttttgcag--------CGCTAAG-CTGAT-TGCACTTTAGGATTTATTCTCA---TAAGAGA-----CCAGACTGTTACG--AATTTTTAA--TTCAC-TAATATCAGAGATTACATTGTTTTGTACTTATGGGAAAACAAGCATGACTA-------ACT-------AAGAAA----TGAAAtcattttatgcatttttta
i caeJap4.Scaffold17084 I 49 C 0

a score=-1470.000000
s ce10.chrX             4172299 13 + 17718866 GGCTTGTTTTTAA
s cb4.chrX              9279915  8 + 21540570 -----TCTACTAG
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold630  6120883  4 + 20921866 ---------TCAG
i caeSp111.Scaffold630  C 0 I 6
s caePb3.Scfld02_0      2436119  4 +  4147112 ---------TCAG
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17084   95389 13 -   375229 ggCTTTTGATTTA
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1144888 12 -  4500979 I

a score=5275.000000
s ce10.chrX             4172312 7 + 17718866 GTTATTA
s cb4.chrX              9279929 7 + 21540570 CTGATTA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1144900 7 -  4500979 GTGATTA
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  6120893 7 + 20921866 CTGATTA
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0      2436131 7 +  4147112 GTGATTA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17084   95402 7 -   375229 GAGATTG
i caeJap4.Scaffold17084 C 0 I 80

a score=-4189.000000
s ce10.chrX             4172319 93 + 17718866 ACGGATTTA-TTCTGGAAG---AGATACTTAAAGCTACATCAACCGAAATATAT-------AA---CACATT---TCCTATCAGTTGCT--CAGCAAAACTAGTTTTCTCTG
s cb4.chrX              9279936 94 + 21540570 AGAGATTTT-GTTTTGAGGAACGTGTATTCAATAT-------------ATCTGAAGAGGGGCA----AAATTTTAAGCTAGCCGATCTCATAAACATGATGATCGTTTCGTa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1144907 84 -  4500979 AAAGATTTG-GTTTGGAGCGTTAGGTATTCAAAAT-------------ATCTAA-------CG----AAATC---AGCCAGGCGTTCCTCATATCACGTACATGTTTTCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6120900 75 + 20921866 AAGGATTTGTTTCGGGAAAAGGAGGTAtt---------------tgaaatctaa-------aaatgcaaatc---tCCTAGGCGTTC------------CCTTCTACGCCTA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2436138 80 +  4147112 AAAGATTTG-TTCTGAAGCGTTAGGtattcaaaat--------atgaaatctga-------aa----agatC---TTCTAGGCGTTCGT---------TTTTTATCTGCCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   95409 80 -   375229 I

a score=133500.000000
s ce10.chrX             4172412 738 + 17718866  
s cb4.chrX              9280030 735 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1144991 791 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6120975 718 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2436218 705 +  4147112  
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold17084   95489 809 -   375229  
i caeJap4.Scaffold17084 I 80 C 0

a score=-6420.000000
s ce10.chrX             4173150 21 + 17718866 -------CGATCGGGGATGAGTTGAATC
s cb4.chrX              9280765  3 + 21540570 --------------AGA-----------
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0  1145782 14 -  4500979 --------------GGATCCGTTGAATA
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold630  6121693 15 + 20921866 -------------GGAACACctttactc
i caeSp111.Scaffold630  C 0 I 10
s caeJap4.Scaffold17084   96298 24 -   375229 CATTCTGCTACGTAAAA----CTAAATC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2436923 28 +  4147112 I

a score=155602.000000
s ce10.chrX             4173171 398 + 17718866  
s cb4.chrX              9280791 471 + 21540570  
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0  1145818 413 -  4500979  
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold630  6121718 415 + 20921866  
i caeSp111.Scaffold630  I 10 C 0
s caePb3.Scfld02_0      2436951 418 +  4147112  
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold17084   96322 459 -   375229  
i caeJap4.Scaffold17084 C 0 I 1374

a score=25991.000000
s ce10.chrX             4173569 163 + 17718866 ATTTTTTGTTCCAAATGTTTTTTGT----CCGGTCATGTTTTACCAAATAAATGAATGAGAAATTCAACGATTTTTTGTTGTATTTCTGAAAAATCGAAA--------ATATATGAAAA----CAATTCAATTGGTCATT----AACAGATCAAGAACATGGACGTGAACATTTGAACTC-------GGA-----
s cb4.chrX              9281262 139 + 21540570 ATTTTCTCTTCGTGATGTTTTCCTCTCTCCTGATCTTTTCT--TCACTTCCatgaaattaaagt-------------------tttttgagtAATTGAAT--------GGA------------GTATT-AATTGACAATCGAAAGAAAGATCGCGAACA------TGAACATTTGATCTT-------GG-TTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1146231 152 -  4500979 atttccttttttccttgaTGTTGTCTCGCCTGATCTTGTTT--TCACTTccatgaaataaaaa----------------------aatgagtaattgAAT--------GAACACGGAAGATAGACATCGAATTGACCATT----GAAAGATCGAGAACA------TGAACATTTGAACTCGACGAGAGG-TTCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6122133 135 + 20921866 att-----tcttcgATGTTTTCCAT-----TGATCTTGTTT--CCAATTCcatgaataaaaag----------------------aataagtAATTGAATCGAATTGAGAACACTGAAA----GATACAAATTGCCAATT----GACAGATCGTGAACA------TGAACATTTGAACTC-------GGA-----
i caeSp111.Scaffold630  C 0 I 812
s caePb3.Scfld02_0      2437369 139 +  4147112 ATT---TCTCTTCGATGTTTTCCATTTCACTGATCTTGTTT--CCAATTccatgaataaaa------------------------aatgagtaattgaattgaattgagaacACGGATG----ACATTGAATTGGCTATT----GACAGATCAAGAACA------TGAACATTTGAACTC-------GA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   96781 1374 -   375229 I

a score=1934.000000
s ce10.chrX             4173732 12 + 17718866 GAAGATGCCAAT
s cb4.chrX              9281401 12 + 21540570 GAAGGTGTGAAT
i cb4.chrX              C 0 I 1549
s caeRem4.Crem_Contig0  1146383 12 -  4500979 GAAATTCTGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2437508 12 +  4147112 AAAGATTCGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=-530.000000
s ce10.chrX             4173744 29 + 17718866 AACAAAACCAAGTGA-----------CATACTTGACATGA
s caeRem4.Crem_Contig0  1146395 36 -  4500979 ----AGAAGAGGTGACAATTAAGGGGAATAGTTAACACGA
i caeRem4.Crem_Contig0  C 0 I 428
s caePb3.Scfld02_0      2437520 34 +  4147112 AGTAAGAATAGAGGATGGTCAC----AATAG--ATCAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=493.000000
s ce10.chrX             4173773 8 + 17718866 ACAGTTGA
s caePb3.Scfld02_0      2437554 8 +  4147112 ATAGTTAA
i caePb3.Scfld02_0      C 0 I 591
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I
e caeRem4.Crem_Contig0  1146431 428 -  4500979 I

a score=0.000000
s ce10.chrX             4173781 1703 + 17718866  
e caePb3.Scfld02_0      2437562  591 +  4147112 I
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268  812 + 20921866 I
e caeRem4.Crem_Contig0  1146431  428 -  4500979 I

a score=6.000000
s ce10.chrX             4175484 5 + 17718866 ATTGT
s caeRem4.Crem_Contig0  1146859 5 -  4500979 ACCGA
i caeRem4.Crem_Contig0  I 428 C 0
e caePb3.Scfld02_0      2437562 591 +  4147112 I
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=15557.000000
s ce10.chrX             4175489 219 + 17718866 TGTCCTCAGCGTTCCCATCTTTCCAAAATGCCAGTGCACTAATTATTTATTG--TGTAAAAGGTTAGCAAA-AGGTTTCTTATACTAGACTGCATTCCAGCTACTGGTCTTATCCCGAACAACGCTTCCACTTCATTATCACCATTCCCGCGCACTTTCCCCGGTGTTATTTACTTTTTTC-----TCAACGATCAGGTTTATATAC---ATATTTT-------------TTAAAGTTT-CGTT
s caeRem4.Crem_Contig0  1146864 213 -  4500979 TGTTCTAAAAGTTCTCACCCTTTTTGAATACCGTAGTACTATTTATTTATCAGCCACAAAAGCTTAGCCAC-AGATCACCTACACTAGACGGAATTCCAACTACCGCTCTCGTCCGGAA-----CTT--------TTACTTTTATTCCCCCGCACTTCACTC-TTGATATTTACCTTCTTCCTCCATCGAAGATTATACCGGTGTTC---AATTTTA-------------ACAAAGTTCACACT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2438153 230 +  4147112 TGTTCTGAGAGTTCTCATCCTTTTGGAATACTGTAGTACTTTTTATTTATCCATAGGAAAATAT--ACTACAAGAGCATCTACACTAGACGGAATTCCAACAACCGCTCTTGCCCGAAACAACGCTTCTACCTAATTACCTTCATTCTCTCGCACTTCCATC-AATTTATTTA----------CCGCCAAAGGTTATGTcagtgttcaaaaatttcatggtCCTCTGCCGCTATAGTTC-CATT
i caePb3.Scfld02_0      I 591 I 123
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=-2690.000000
s ce10.chrX             4175708  78 + 17718866 AATGTTAA------------------------------------------------------------------------------------TCGCTTAACATATTGCATTTGATGCTCATTGGTCGACAAAAGTTTTGCAAGTA----GTGTACATTACTC---AACA
s caeRem4.Crem_Contig0  1147077 169 -  4500979 AACTTTAACTTTATTTCCATTGAAATCCGGGGAACGTGGGTTATGTGTGAGAACTTGCCCTTTCAGTTTACATGCCATAACTACAATCCGTGTTGTCTGGAATCTTACATTGAGTTCTTGTCTGAGGATGTGCCCTCTGAGGGTTCGATATGAATACTTCTTTTAAACA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2438383 123 +  4147112 I
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=-3456.000000
s ce10.chrX             4175786 15 + 17718866 ---------------------------AATATTATTTGTTTG---------------
s caeRem4.Crem_Contig0  1147246 37 -  4500979 --------------------ACTCCATCATATCATTAATTCAAGAAACCAACTTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2438506 49 +  4147112 aattttgtttcaaaatccgaattttctcATACCAGCAGT------ATCcagtttt--
i caePb3.Scfld02_0      I 123 I 6
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I
e caeSp111.Scaffold630  6122268 812 + 20921866 I

a score=-478.000000
s ce10.chrX             4175801 25 + 17718866 ---TTGTTTTTCTTTTTGACTAATTAAT--
s caeRem4.Crem_Contig0  1147283 26 -  4500979 Ttattctttctattttc--ccaAATTAT--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6123080 25 + 20921866 ---ttgtttttgttttc--catagCCCTTG
i caeSp111.Scaffold630  I 812 C 0
s caePb3.Scfld02_0      2438561 23 +  4147112 ---caatttttgttttt----gaattaccg
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17084   96781 1374 -   375229 I
e cb4.chrX              9281413 1549 + 21540570 I

a score=28103.000000
s ce10.chrX             4175826 96 + 17718866 TCCTCTGGAAGTTTTCTCCGCTGAGTAGCAA----GAAATTAATTTACTCT---CTCAGCAGAA---TGATTATGGAATTATGGAATTTTCAGCGTT-ATTACTCGA
s cb4.chrX              9282962 92 + 21540570 ttttctggaagtttcgtTCGCGA----GTAA----GAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTT-------TTTCGGTATTATCAGCTCGCTTTGCTACT
i cb4.chrX              I 1549 C 0
s caeRem4.Crem_Contig0  1147311 88 -  4500979 TGTTCTGGAAGTTTCGTTCTCAGGATCGCAA----GAAATTAATTTCAT-----ATCAGCAGAAT--TGTT-------TTTCGGTGTTCTTAGTGAG-TTTGCTACT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6123105 91 + 20921866 TATTCTGGAAGTTTCTTTCCCAAaagctcagaaaaaaaattaatttgat-----tccagcaaaa---tgtt-------tttcggTGTTCTCAGTGGT-TCTGCTATC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2438584 87 +  4147112 tgttctggaagtttcgttCCCAGAATCCCAG----GAAATTAATTTGAT-----ATCAGCAGAA---TGTT-------TTTCGGTGCTCCTAATGAT-TTTGCTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   96781 1374 -   375229 I

a score=142291.000000
s ce10.chrX             4175922 294 + 17718866 GATAAACATGTGTCAAAACAGAGATCTAACGAAAGCCGGATCCCATGTGATTTTCAATTCTTGTTATTCACA----CATGCACCTTAGTTGTTCCAGACCATTCCCACATATCA--------AAACAGAAT----ATAC-TA--TATTATTCATTTTTT---------GAT-AACCTGTAACAGAGAGTCATAATCATAAACAACT-GGATGA-ATAG---AAACCACTTGGTTC--------TGGTGTTCACTGGGGGAGAAGGTAGGGAAGGGGAATTAAATTAA---TTGGG-TTGCGTCCCGGTTATCGTTCATAAATACTGCTGATAAGGATCTT
s cb4.chrX              9283054 290 + 21540570 GATAAACATGCCTCAAAACAGAGATCGGCTG----CCGAATCCCACAAGACTTCCAATTCTTGTTATTCAAATACTGCTGCACTTGAGCTGTTC----------TGATTCagta--------aaa-acaaagaaaaaag-ta--atttatttgattttttttcatttggatAAACCTGTAACATGAAGT------------CAATT-AATAAA-ACTG---AAACCActtggttttctttttcaaaa-ttcacaggGGAGAGGAAAATAaggaaataaataaaataa-tatTAAT-CTGCGTCCCGGTTA----TATCAAATACTGTTTTTAGCAATCTT
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0  1147399 291 -  4500979 GATAAACATG-CTCAAAACAGAGATCTCTCGAAATCCAGATCCCACGAGTTTTCCAATTCCTGTTATTCATA----GTTGCACTTGAGTTGTTCCAGACCGTTATCATTAATCA--------AAACACAATTGTAAAAc-ta--tattattcatttttt---------gat-aacctGTAACAGAGAgt------caaaaacaatt-gaaaga-agagaaaaaaccaCTTGGTTT--------GGAT-TTCACAGGggaga-aaaaatgggggaagTGATAAATTAA----TGAG-TTGCGTCCCGGTTATCGGTAGTGAATACTGTTCTtagtgatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6123196 292 + 20921866 GATAAACATG-CTCAAAACAGAGATCGGACAAAATCCGGATCCCACGTGCCTTCCATTTCTTGTTATTCATA----CTTGTACTTGAGTTGTTCCAGACCATTCTCATTAACCA--------AAACACAAT----AAAC-TAAgtattattcatttttt---------gat-aacctGTAGCAGAGagt------caaaaacattttgaaagacaaaagaagaacCACTTAGTTC--------TTAT-TTCACAGGGGAGATGAACAAGAAggaaataataaattat----tgtG-TTGCGTCCCGGTTATCGTTGGTGAATACTGTTGTTGGTGATCTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2438671 288 +  4147112 GATAAACATG-TTCATAACAGAGATCGGACGAAATCCGGATCCCACGAGACTTCCATTTCTTGTTATTCATA----CTTGTACTTGAGTTGTTCCAGACCATTCTTTTTAATCA--------AAACACAGT----AAAC-ta--tattattcatttttt---------gat-aacctGTAGCAGAGAGT------CATAAACAACTGAAAAGA-ATTAACCGAACCACTTAGTTC--------GGAT-TTCACAGGGGAAAAGAGAAGG--GGAAGTAATAAATTAA----TGAGTTTGCGTCCCGGTTATCGTTGGTGAATACTGTTCTTGGTGATCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   98155 279 -   375229 GACAAACATG-CT-AAGTTAAAGATCGGCGGAA--TCGGATCCCACGAGATTCTAGAATTCAGTTGTTTATA----CACATATTTTTCGTGTTTGGGATCGTTTTAACGAATTAAACAAAGCAAATAGGAT----AAACATA--TAATattaatttctttttt-----gat-aaCCTGCTACAGAAAGT------CATA--------AAAAGA-TTTGAA-GAACCACATGGTt--------------ttcaaaaggaaaa----------aaaaacaattatttgtatttaaaA-TTGCGTCCCGGTTATCGTTGGCGAATACTGTTCTGGTTGATCtt
i caeJap4.Scaffold17084 I 1374 C 0

a score=2210.000000
s ce10.chrX             4176216 21 + 17718866 GGTAATAAATAAATAAAAAGT-------
s caeRem4.Crem_Contig0  1147690 13 -  4500979 --------gaaaataagttat-------
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold630  6123488 13 + 20921866 --------AGGAATAAGTTAT-------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2438959 13 +  4147112 --------AGAAATAAGTTAT-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   98434 20 -   375229 --------ataaataaattaaaacagGG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9283344 16 + 21540570 I

a score=440067.000000
s ce10.chrX             4176237 652 + 17718866  
s cb4.chrX              9283360 653 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0  1147711 652 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  6123501 658 + 20921866  
i caeSp111.Scaffold630  C 0 I 25
s caePb3.Scfld02_0      2438972 656 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084   98454 710 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-8127.000000
s ce10.chrX             4176889 25 + 17718866 GGCTCTGTT--TTACTAGAA-GTACTGT
s cb4.chrX              9284013 22 + 21540570 ---taagtt---GATTAGGATAAAAACT
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1148363 21 -  4500979 ---TTCATT----ACTGCAATAAAACAT
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0      2439633 16 +  4147112 ------------GACTACACATTAATGT
i caePb3.Scfld02_0      I 5 I 7
s caeJap4.Scaffold17084   99164 21 -   375229 AGGTTAGTTTTTGACGAACAT-------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6124159 25 + 20921866 I

a score=540283.000000
s ce10.chrX             4176914  953 + 17718866  
s cb4.chrX              9284042  926 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0  1148392  983 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold630  6124184  966 + 20921866  
i caeSp111.Scaffold630  I 25 C 0
s caePb3.Scfld02_0      2439656 1041 +  4147112  
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084   99185 1075 -   375229  
i caeJap4.Scaffold17084 C 0 I 1554

a score=-25059.000000
s ce10.chrX             4177867 203 + 17718866 CTTGCATGAAATACATGTTTCGATTAG---AATCATGAAAGTCAGAAAAAAACCACAGAAC---AAAATTGCTGATATTACCAAAGAAAAATTAAATTCGACACAT-ATAAAGCTACAC--------GATGTGG-----------ACGATGCGATCACTGGG--------CCAAAACCGAA-------------ATGATCT--------------TAGATCATG-------GTATGAACAAGGAATTATTGTGCTCAATGGAATGATGGAA
s cb4.chrX              9284968 206 + 21540570 aatatttttc----------------a---cgagATGGGGTTTGTAAGTAACACAGAAACATAGAAA--------TACTACGTCAAAGTCG----ATGGGTTGAGAGAAAATGCAAAAC------GGGAAATTT-----------GAGAAGGTA-CACGaaagaaaatgtttggaatCACGGGTTCCAAAACAAGTGATTG------CGAGAAAGAAGATCATGGTAAA--ATGTGAATAAGAAGATGAAG--------GGAATGTAAGGG
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0  1149375 207 -  4500979 atgaaatgaa----------------a---aaaaaagggacTTCTTATGAAAACGGATACA---GAA--------TACAACGTGAGAAGTGTCAAATGCATTGGGACATAAAGCTACAC------GAAAATTAG-----------GAACAGGGATCACGAGA------GTCCGGGAACAAATGTT---------GTGATTTGGCATCCGAGAAC-AAgatcatttcaaattttgcgaATGAGAAAATTCAGTCTAGTT-GGAATGATAGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6125150 213 + 20921866 ATCCCTTAAA----------------AGTTCGAGATggatttcaaatataaaacaCAAGAA---GAA-------TTACTACGTCATGAATACAAAA--CAATGGGA-AAAATGCAATGG------GTGATGGATCTACTCGCCATAAATAGGGATCACTGG-------GCCCTGAATCAGA--AT---------GTGATTTGGCAT-ACAGAAC-AAGATCATATTAAA--ATGTGATTGAGGAATTGTGCTAAGTAA-GGAATGAGATAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2440697 229 +  4147112 ATGTAATAAGATa-acatttcaattcaattcaacatgagtttt---tgaaaaacacaggAA---AAA--------TACTACGTacagaatacaaa----aatttga-aaaatgcattggGTTCATGTGAGGGGT-TACTCGCCA-AGTGGGGGATCACGGGG----GTGTCCTGTATTCAA--TT---------CTGATTTGGCAT-TTACCAT-AAGATCTTCTCATG--AATGGAAGGAGGAATTTCGCTAAGTAA-GGAATGGAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  100260 1554 -   375229 I

a score=-4148.000000
s ce10.chrX             4178070 35 + 17718866 ----TAA-AAAGTGAAA--TAAAAACAATCTCG---------ATTCCCTTT------
s caeRem4.Crem_Contig0  1149582 53 -  4500979 TGCATAA--AAGTGAAA--TAAAGAACACAATGGAATCCGGTGAAATcagggaaaat
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold630  6125363 32 + 20921866 ----TCA--AAGTGAAATATAAAACAAATTATG--------------CTTAG-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2440926 38 +  4147112 ----TCACCAAGTGAAAC-TGAATATAATTATG---------AAGATCATAT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  100260 1554 -   375229 I
e cb4.chrX              9285174 30 + 21540570 I

a score=-14505.000000
s ce10.chrX             4178105 137 + 17718866 -----------GAAAAGGTGACATTGAACAATTGAATTGCTATAAAATG---------------------AT-------GTGAAAGTG----------AAACAAGTTATG-----ATTTGAATATTTAGAAAACA---TGGAAATTTAAT--GAAACTTTAACTA-------------TTATCCGTATACGATGACT---GATCATCGATTG
s cb4.chrX              9285204 145 + 21540570 -----------aagaa---GATTTGAAGCAATTGAATTGCAATGAAGTGTTATTGATC------------ATTCTATGATTGAGA--------------------TTAGTTTTCAGTTAAAGCATGAAGattaaa---t---taattatt--aaa---ttaatta----------tCTTCCTCGGAAGATCTTCTGCGTTGGTCTTCCTGCG
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0  1149637 186 -  4500979 -----------aaaaatggaatgcAAAACAATTGATGTGCTATACTGTGTagtttttcgggaaaaaaagtatcaaaggaaagaaaacatgaaataaaaacataagtTAGT-----ATTAGAGAAGGAGAATTTAG---Tg-atgaatattgaaaa---ttggatatcagtcttcttcttcttcaagaTATCGTTTGC---GATCTTCTAGAA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold630  6125395 151 + 20921866 GAACACG-GTGAGAAG---GAATGGGAACAATTGAAGTGCTATAAAGTG---------------------ATGGTA---ATCAAAATG--------------AAGTGAAT------TGTggtaaagaaaaacaaaatatgtaTAAATTAT--TAA---TTAATTG-----CCTAGTCTTTGTCAAAAGATCTCTTTT---GATCATCAAGAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2440964 146 +  4147112 GAACATGAATTTCaag---gaatggaaaaaattgatgagctATAAAATG---------------------ATGATAGGgataaaaatt----------------gttgat------ttagAGTTTGCAAAAC------tgtatgattttt--gaa---gaaacta-----cAC-TTCATCATCAGAGGGCCTTCTCT---GATCTTCCAGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  100260 1554 -   375229 I

a score=326298.000000
s ce10.chrX             4178242 470 + 17718866 CATGGGCCAATGCAGCCGCCCGAAGGGAGTCAAAATTTTCAGCCCCTGATTGAGCAGCCATTCTTGAAAACAGCGAGCTCTGATCATCCAGCAAAGTGATCGGTTTGTCAAACTCGACGAGCTCTCCTTTTTCAAACACCTGCAA----GTTGCGAACCTAGGCATTGTTTGCTT--------GTTGAGAA------ACCACTTACCATTACATTATCGCTGTTCATAATGGTGTGAAGACGGTGGGCCACCGTGATGATTGTGGCGTTTTTGAAAAAGTCTCGAATTGTTTTCTGGATGCAAGCATCTGTCACTCCATCAACATTTGCGGTTGCTTCATCAATAACAAGAATTTTGGATCGGTGGATCATTGCTCGGGCAAGACAGAAAAGTTGACGCTGACCGACAGACAGGCTGACTCCCCGTTGGCCCAATTCGACGTTCAATCCTTTTTCTTTTGTGATGGAACGTTTAAGCTCACACTGAAA
s cb4.chrX              9285349 478 + 21540570 CATAAGCTTCAGCGGCGTTACGAAGAGCATCAAAATTATCAGCTCCAGACTGATAGGCCATTTTTGCAAACAACGAGGTCGGGTCATTGAGGAGGGTCAGAGGTTTGTCGAACTCTTAAAGCTCTCCTTTTTCGAACACCTGCAA----GTTGCGAACAT------TGTTTGTTTCCGGAATGTTGCCGAAATTTCTCCCTCTTACCATTATCCTATCACTGTTCATAATGGTGTGCAAACGGTGAGCAACAGTAATTACGGTAGCGTGTTTGAAGCTTTCCTGAATGGTTCTCTGAATGCACGCATCCGTAACTCCGTCGACATTGGCAGTGGCTTCGTCGATGACAAGGATCTTAGATTTGCGGAGCATGGCACGAGCGAGACAGAAGAGTTGGCGTTGACCGACTGATAGGTTGACACCACGAAGTCCAAGAGTGACATCGAGTCCTCGGTCTCTGGCGATAGTGTATTTGAGCTCACACTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1149823 472 -  4500979 CATAAGCCCCAGCAGCCGAGCGTAGTGATTCCAAGTTTTCAGCTCCAGACTGAGCAGCCATCCTGGCGAACAGACTACTCTGATCGTCGAGGAGGGTTATCGGTTTGTCAAATTCAACAAGCTCTCCCTTTTCGAACACCTGCAAG-TTGTTGCGAACATAAGCACTGTTTGCT---------CTTTCAAA------CCCTCTTACCATTATCATATCAGTGTTCATTATGGTGTGAAGACGGTGAGCAACAGTGATGATAGTCGCATCTTTGAAGAAGTTTCGAATTGTTTTCTGGATACACGCATCGGTCACTCCATCCACGTTGGCAGTAGCTTCATCAATTACAAGTATACGAGACCGATGGATCATGGCACGAGCAAGACAGAAGAGTTGACGTTGGCCAACTGACAAACTGACACCACGTTGTCCGAGTTCCACGTGGAGACCTTTCTCTCTAACaatcgtatttttcaactcGCACTCAAA
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold630  6125546 473 + 20921866 CATACGCATCAGCAGCCGTTTTCAATGACTCCATGTTCTCGGCTCCAGACTGGGCTGCCATTTTGGCGAATCTGGTACTTGGATCGTTTAAAAGTGTTGTTGGTTTGTCGAACTCCACCAGCTCTCCTTTTTCGAACACCTGCAAGTTTGTTGCGAACTTGAGATTTGTTTGTT---------CTCTCGAG------TACTCTTACCATGATCATATCACTGTTCATTATAGTGTGAAGACGATGTGCCACTGTGATAATGGTCGCATCTTTGAAGAAACTGCGGATTGTTCTCTGAATGCATGCGTCGGTGACACCATCAACATTAGCAGTTGCTTCATCGATCACAAGAATTTTTGCACGATGAATCATGGCACGGGCAAGACAGAAAAGCTGGCGTTGGCCAACGGACAAACTAACTCCTTGTTGGCCGAGTTCAACATTCAAGCCTTTATCTCTGGTGATGGCTCGTTTCAGTTCAcactgtaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2441110 473 +  4147112 AGTAGGCATCAGCGGCCGTTCGAAGTGATTCCATATTCTTAGCTCCTGTTTGTGCTGCCATTCTGGCGAACAGTGTATTTGGATCATTGAGAAGTGTTGTTGGTTTATCGAACTCTACCAGCTCTCCCTTCTCGAACACCTGCAACAATGTTGCAAACATCAGTTTTGTTTGCA---------CTCTTGAG------TACTCCTACCATTATCTTATCACTATTCATGATAGTGTGAAGTCTATGAGCTACTGTGATTATTGTTGAGTCTTTGAAGTAAGAACGGATAGTTTTCTGGATACATGCATCAGTAACACCATCCACATTGGCAGTGGCTTCATCAATCACCAGGATTTTGGAACGATGAATCATCGCGCGAGCAAGACAGAAGAGTTGTCGTTGGCCGACAGAGAGACTAACACCTCGTTGTCCAAGTTCGGCATTCAAACCTTTCTCTCTGGTTATAGCACGTTTGAGTTCACACTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  101814 468 -   375229 CATATGTTGTTGCTGCCGCGCGAAGAGCTTCAAAGTTAGCAGAGCCCGTTTGTGCTGCCATTTTTGCAAATCTCGTGGTCAAGTCGTTGAGCAGAGTGATTGGTTTGTCAAACTCAACCAGCGCTCCCTTTTCGAAAACCTGCAA----CTTGCAAATATGAGCATTGTTTGTT---------CAGAAAGC------ACGTCTAACCATTATCCGATCGGTGTTCATAATTGTGTGAAGACGATGAGCAACAGTGATAATTGTAGAGTTTGCAAAAtagtttctgattgttttttgaatacaTGCGTCGGTCATGCCATCTACATTAGCAGTTGCTTCATCAATTACTAGAATCTTGGAATGATGAATCATAGCACGAGCCAAGCAGAAAAGTTGGCGTTGGCCGACGGACAAAGTGACTCCACGGTTACCAATTTCCACGTTTAATCCGCGCTCTTTTGTAATGGCTTTTTTCAGTTCACACtaca-
i caeJap4.Scaffold17084 I 1554 C 0

a score=-10853.000000
s ce10.chrX             4178712 29 + 17718866 ATTTTTTCAACGATTATCCTACAGAATCT
s cb4.chrX              9285827 23 + 21540570 ATCATTAGATTGTTTGGA------GGTCT
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold630  6126019 12 + 20921866 -----------ttttttc------tctct
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2441583  4 +  4147112 -----------G--------------CAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  102282  1 -   375229 ---------------------------c-
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=-546.000000
s ce10.chrX             4178741 15 + 17718866 ATTAAAAATTTCGAT
s caeSp111.Scaffold630  6126031 15 + 20921866 attgaAAACTTCCAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2441587  5 +  4147112 ATTCA----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  102283 10 -   375229 attaaaaaaa-----
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9285850  9 + 21540570 I
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=-235.000000
s ce10.chrX             4178756 14 + 17718866 TTCATATGAATTTC
s caeJap4.Scaffold17084  102293 11 -   375229 ttcatattttc---
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2441592  0 +  4147112 C
e cb4.chrX              9285850  9 + 21540570 I
e caeSp111.Scaffold630  6126046  0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=-1851.000000
s ce10.chrX             4178770 99 + 17718866 GGAATCTCGTATTAAATTAGACCGTTGGATCAGATTTAGGCACACATAGGACAAAACTAGGGCTACGGTGAGGTGAAGTTTGAACTTGGTTAAAATATG
s caePb3.Scfld02_0      2441592 25 +  4147112 ------------------------------------TGAGCA------------------------------GTGTA--------TTAGTCAAACTACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  102304  0 -   375229 C
e cb4.chrX              9285850  9 + 21540570 I
e caeSp111.Scaffold630  6126046  0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=0.000000
s ce10.chrX             4178869 40 + 17718866 AGAAAAAGTTGGATCAGACTTGGGAGGGGTCATGTCCAAG
e caePb3.Scfld02_0      2441617  0 +  4147112 C
e caeJap4.Scaffold17084  102304  0 -   375229 C
e cb4.chrX              9285850  9 + 21540570 I
e caeSp111.Scaffold630  6126046  0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=-1208.000000
s ce10.chrX             4178909 51 + 17718866 TCTTCCTCAAGTCTTGCTTATGTCTTGTCCAAGTCTTGCTCAATCTTTGCC
s caeJap4.Scaffold17084  102304 10 -   375229 ttttttttaa-----------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2441617  0 +  4147112 C
e cb4.chrX              9285850  9 + 21540570 I
e caeSp111.Scaffold630  6126046  0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=3.000000
s ce10.chrX             4178960 25 + 17718866 CAGTCAACATTTTACTTTTTCAATA
s caeSp111.Scaffold630  6126046 23 + 20921866 CAGTAAAAAATCACCTGTTCCAA--
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  102314 17 -   375229 --------attttaatttttcgtta
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2441617  0 +  4147112 C
e cb4.chrX              9285850  9 + 21540570 I
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=586.000000
s ce10.chrX             4178985 20 + 17718866 AAATTTGTAAAGCCAATGGT
s caeSp111.Scaffold630  6126069 15 + 20921866 -----TGCAAACCAGATGGT
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2441617  0 +  4147112 C
e caeJap4.Scaffold17084  102331  0 -   375229 C
e cb4.chrX              9285850  9 + 21540570 I
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=0.000000
s ce10.chrX             4179005 79 + 17718866 GTTAAAACAAGATTATAGGGGCCATAAAAATGGCTTATAAAAATTTCATTCTCACATGTTATTCTTCAATAAATTAAAG
e caePb3.Scfld02_0      2441617  0 +  4147112 C
e caeJap4.Scaffold17084  102331  0 -   375229 C
e cb4.chrX              9285850  9 + 21540570 I
e caeSp111.Scaffold630  6126084  0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=100.000000
s ce10.chrX             4179084 1 + 17718866 C
s cb4.chrX              9285859 1 + 21540570 C
i cb4.chrX              I 9 C 0
e caePb3.Scfld02_0      2441617 0 +  4147112 C
e caeJap4.Scaffold17084  102331 0 -   375229 C
e caeSp111.Scaffold630  6126084 0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=-529.000000
s ce10.chrX             4179085 2 + 17718866 -CA
s cb4.chrX              9285860 2 + 21540570 CC-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2441617 2 +  4147112 -CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  102331 0 -   375229 C
e caeSp111.Scaffold630  6126084 0 + 20921866 C
e caeRem4.Crem_Contig0  1150295 40 -  4500979 I

a score=450.000000
s ce10.chrX             4179087 2 + 17718866 TA
s cb4.chrX              9285862 2 + 21540570 TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150335 2 -  4500979 TA
i caeRem4.Crem_Contig0  I 40 C 0
s caePb3.Scfld02_0      2441619 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  102331 0 -   375229 C
e caeSp111.Scaffold630  6126084 0 + 20921866 C

a score=8347.000000
s ce10.chrX             4179089 22 + 17718866 CCTGCTCTAACGCAAACCAAAT
s cb4.chrX              9285864 22 + 21540570 CCTTTTCCAATGCATTCCAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150337 22 -  4500979 CCTGCTCCAAGGCCTCCCACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2441621 22 +  4147112 CCTGTTCAAGAGCTGCCCAGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  102331 22 -   375229 CCTGATCCAAAGCAGCCCATAA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6126084  0 + 20921866 C

a score=76202.000000
s ce10.chrX             4179111 108 + 17718866 AGTAGCATCATCATACTCATCGAACGGGTCCAAATTCTCCCGGACCGTTCCTGAAAAGATTACGGGCTCCTGCGGAATGATAGACATTCCTCCTCTTCTGAAGTTAAG
s cb4.chrX              9285886 108 + 21540570 ATCGGCATCTGAGTACTGATTGTATGGATCCAAGTTCTCTCGGATAGTTCTGGAGAAGATGACTGGCTCCTGTGGAATTATAGCCATGCCAGCTCGTCGAAATTTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150359 108 -  4500979 CGTGGCGTCATCATACTGATTGTAGGGATCCAAATTCTCTCGGATTGTTCCTGAGAAAATCACAGGCTCCTGAGGAATAATCGACATTCCTTTTCTTCGGAACTTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6126084 105 + 20921866 ---AGCATCGTCATATTGATTGAAAGGGTCTAGATTCTCTCGGATTGTTCCAGAGAAAAGAACGGGCTCTTGTGGAATAATTGACATTCCGGTACGTCTAAACTTCAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2441643 108 +  4147112 AGTGGCATCGTCGTATTGGTCAAAAGGATCGAGGTTTTCACGGACTGTTCCAGAGAAAATAATAGGCTCTTGTGGAATGATAGACATTCCTTTCCTCCGGAATCTTAG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  102353 108 -   375229 AGTTGCATCATCGTATTTCCCAAACGGATCAAGATTCTCACGAACAGTTCCCGAAAACAAAATGGGCTCTTGAGGGATGATGGACATTCCACCTCTGCGGTAATTCAG
i caeJap4.Scaffold17084 C 0 C 0

a score=422.000000
s ce10.chrX             4179219 1 + 17718866 A
s cb4.chrX              9285994 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150467 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6126189 1 + 20921866 G
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084  102461 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2441751 1 +  4147112 I

a score=82167.000000
s ce10.chrX             4179220 134 + 17718866 CTAATGTGATCCAGATCCACACCGTCGATAGTGACACGTCCAGAGCAGTACTCTTTCAGTCCAAAAATAATTTTAATGAGTGTTGATTTACCAGCACCAGTTCGGCCGACGACTCCAATCTAAG-------TTTCAGAAGT
s cb4.chrX              9285995 135 + 21540570 CTGATGCTATCCAAGTCTGCATCATCGATTCTGACCTGTCCACCACAGTATTCTTTGAGACCAAACAAGACTTTAATGAGCGTGGATTTTCCAGCACCGGTTCTACCGACAACTCCGATCTGAA------AGTTTGGaagt
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0  1150468 137 -  4500979 CTGATGCCATCCAAGTCCACATCATCAATTCTGACTTGTCCACCACAGTATTCTTTTAAACCAAACAATACTTTGAGAAGTGTCGATTTTCCTGCACCCGTTCTACCCACTACTCCGATCTGAA----TTGTATTGAAAAT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold630  6126190 141 + 20921866 CTAATGCTATCCAAATCTACATCGTCAATTTTCACTTGTCCCGCGCAGTATTCTTTCAATCCGAACAGAATTTTGATAAGAGTGGATTTTCCAGCTCCAGTTCTTCCGACGATACCGATCTGGAAGTGCGAGTTTTTAGAA
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0      2441752 138 +  4147112 CTGATACTGTCCAAGTCgatatcatcaattttcactaGTCCGGAACAATACTCTTTCAGTCCGAATAGAACTTTTATCAGGGTAGATTTTCCCGCTCCAGTCCTTCCAACAACTCCAATCTGAA---TCAAGATCATAGTT
i caePb3.Scfld02_0      I 1 I 7
s caeJap4.Scaffold17084  102462 138 -   375229 CTGATATTATCCAAGTCGACGCCATCAATGAGAATGCGTCCGGAACTGTATTCCTTCAAACCGAAAAGCGTGCGAAGCAAACTTGACTTTCCTGCGCCAGTTCGGCCAACTACTCCAACCTGCA---AAGAAAGCAGAAAT
i caeJap4.Scaffold17084 C 0 C 0

a score=-6443.000000
s ce10.chrX             4179354 30 + 17718866 ----AATACTCTGAACAAAAAGTTAGTAACTCAC----
s caeRem4.Crem_Contig0  1150616 23 -  4500979 ----TTTCTTCTGTGCG-------ATTATTTTAC----
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold630  6126338 15 + 20921866 ----TCTTTTGTAAA---------------TTAC----
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0      2441897 18 +  4147112 ----TATTTACTGACTA------------TTTAC----
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084  102600 25 -   375229 GTTATTTCTAATACAGA-------------TTACATAC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9286130 29 + 21540570 I

a score=146881.000000
s ce10.chrX             4179384 210 + 17718866 CTTTTGTCCACCTAAAACAACAAAGCTAAGATTTTTGAGTACTTTGGTCTCCCCATAATTGACAGATACATTTTCAAACTCGATTTCTCCTTTCGTTGGCCAAGAGTTCAGTAGCTGTTTATCGAGGTATGCATCATGTGGTCTTCTGGCTTCTTCTTCAGATTTCAATTTGGTGTACTCTAGCACTCGTTCCACGGAAACCATCTGCAA
s cb4.chrX              9286159 210 + 21540570 TTTTTGTCCTTCAAGGATAACAAAACTCAAATTGTTGAGTACATAGGTCTCTCCGTATTTGACTCGAACGTCTTCAAATTCGATCTGTCCTTTAGTTGGCCAAGCGTTTTTGAGTGAGTCATCCAGGTATGTGTCGTGTGGTCGTCTCAAATCTTCCTCTGACTTCAATTCGGTATACTCCAAGATTCTCTCAATTGAAACCATCTGTAA
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0  1150639 210 -  4500979 CTTTTGTCCTTGGAAGATAACAAAGTTAAGATTGTTGAGCACATAAGTGTCTCCGTATTTGACTCGAacgttttcaaattcaatctGTCCTTTGGAAGGCCAACTTTTCTCCAATACATCGTCCAAATACTTGTCATGTGGTCTTCTCATCTCCTCTTCTGACTTGAGTTCAGTGTATTCCAGAATTCTTTCAATGGAAACCATCTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6126353 210 + 20921866 CTTCTGTCCTTGTAGAATAACAAAATTGAGATTGTTCAAGACATAAATGTCACCATATTTAACCCGAACAttctcaaattcaatttgaccCTTTGATGGCCATGACTTTTGAAGTACATCATCCAAATATTTGTCGTGTGGTCTTCGCATATCTTCCTCCGATTTCAATTTCGTGTACTCCAACATTCGTTCCACCGAAACCATCTGCAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2441915 210 +  4147112 CTTCTGGCCTTGCAAGATCACAAAATTCAGATTGTTTAGAACATAATTGTCGCCATATTTGACACGAACGTCTTCAAACTCGATTTGCCCTCTAGAAGGCCAGGAATTTTCTAGATGTTCATCTAAATATTTGTCATGGGGTCTTCTCATGTCTTCTTCGGATTCCAACTCTGTGTACTCTAAGATTCTTTCAACCGATACCATCTGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  102625 210 -   375229 CTTTTGCCCACCTAAAATAACGCAATTAATGTTCTTTAATACATAAGTTTCTCCGTATTTGACACATAGGTTCTCAAAGCGAATTTCTCCTGATTTCGGCCAAGAGCTACCGTATTCTTCATCCAGGTACTTATCATGCGGCCTGCGCACATCTTCTTCTGATTTTAGCTTGGTATATTCAAGCACTCTCTCCACCGACACCATCTGAAA
i caeJap4.Scaffold17084 C 0 I 33

a score=-81.000000
s ce10.chrX             4179594 33 + 17718866 ----AT--CGACAGTTTGAATTCAATCCGCATACTACTA
s cb4.chrX              9286369 31 + 21540570 CAAGAAACCAATGAATCAAATTCATTCCATG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150849 31 -  4500979 ----AAACGAACGTGTCAAATTTAAATCATG----CCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6126563 33 + 20921866 ----AA--CAATGTTACAGAATTAAACTATGCGCTCTCC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2442125 29 +  4147112 ----AA--TaatgttttaattttaaacCATG----CCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  102835 33 -   375229 I

a score=377376.000000
s ce10.chrX             4179627 664 + 17718866  
s cb4.chrX              9286400 613 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1150880 604 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6126596 611 + 20921866  
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0      2442154 610 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  102868 577 -   375229  
i caeJap4.Scaffold17084 I 33 C 0

a score=1000.000000
s ce10.chrX             4180291 1 + 17718866 G
s cb4.chrX              9287013 1 + 21540570 G
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0  1151484 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2442764 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  103445 1 -   375229 G
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6127207 36 + 20921866 I

a score=424.000000
s ce10.chrX             4180292 20 + 17718866 TGAAAAGGTCAAATTTTAAA
s caeRem4.Crem_Contig0  1151485 15 -  4500979 -----AAGTGGAGTTTTCAA
i caeRem4.Crem_Contig0  C 0 I 22
s caePb3.Scfld02_0      2442765 10 +  4147112 ----------AAATATTgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  103446 16 -   375229 ----TAaggaaaattttggg
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9287014 58 + 21540570 I
e caeSp111.Scaffold630  6127207 36 + 20921866 I

a score=-550.000000
s ce10.chrX             4180312 10 + 17718866 --ATAGTTCGTT
s caePb3.Scfld02_0      2442775  7 +  4147112 --ctatt---tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  103462  9 -   375229 aaataag---tt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9287014 58 + 21540570 I
e caeSp111.Scaffold630  6127207 36 + 20921866 I
e caeRem4.Crem_Contig0  1151500 22 -  4500979 I

a score=-6278.000000
s ce10.chrX             4180322 328 + 17718866 CGAGAAATGGGCTCTGGCGTTAGGGAGGGGGGTCTTACCTAGGTGTTTTTAGGGGGTATTTCCTATAGGGTGGGTCTTAGAGGATCTTTTCTAGGTTGTCGTTTCCACTCTTCTAGGAGATTTTAGGGGTTCTTCTTTCTAAGAAAAATTCTTAGGGTTTTTCCGAGTAGTGTTTTAGGATAGGATGTCGTTCTTGTAGTCACTAATGGCCTTGAGCAACGTTAAAATCAGCTAAATTTAGTATTCCGATCAGGGATGTGCGGCGAAAAAACCTTTGACTTGCTCTGAGCTCAATCGGGCTCGACTTAACATAGATTAGTAAATTTTT
s caePb3.Scfld02_0      2442782  84 +  4147112 cgaaaaat----cccggC-------------------------------------GTATTGTCTATCAGA------------------------------------------------------------------------------------------TTTCGAATATCGATTCA----------------------------------TTGACTCACATGAAGAGC------------------------------------ACAAAACTT---------------CTCAatc--------------------------attt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  103471   0 -   375229 C
e cb4.chrX              9287014  58 + 21540570 I
e caeSp111.Scaffold630  6127207  36 + 20921866 I
e caeRem4.Crem_Contig0  1151500  22 -  4500979 I

a score=-716.000000
s ce10.chrX             4180650 29 + 17718866 AACATTCTCAAAAGTTTGGCAATATATTA
s caeRem4.Crem_Contig0  1151522 29 -  4500979 aacatttgaaaattgatggaaaaatatga
i caeRem4.Crem_Contig0  I 22 I 22
s caePb3.Scfld02_0      2442866  6 +  4147112 --cattct---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  103471  0 -   375229 C
e cb4.chrX              9287014 58 + 21540570 I
e caeSp111.Scaffold630  6127207 36 + 20921866 I

a score=0.000000
s ce10.chrX             4180679 15 + 17718866 AAATTGTACTTTGTA
e caePb3.Scfld02_0      2442872  0 +  4147112 C
e caeJap4.Scaffold17084  103471  0 -   375229 C
e cb4.chrX              9287014 58 + 21540570 I
e caeSp111.Scaffold630  6127207 36 + 20921866 I
e caeRem4.Crem_Contig0  1151551 22 -  4500979 I

a score=39.000000
s ce10.chrX             4180694 17 + 17718866 AAATAAAATGTATTCGA
s caeJap4.Scaffold17084  103471 13 -   375229 aaagaaaaagaa----a
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2442872  0 +  4147112 C
e cb4.chrX              9287014 58 + 21540570 I
e caeSp111.Scaffold630  6127207 36 + 20921866 I
e caeRem4.Crem_Contig0  1151551 22 -  4500979 I

a score=65572.000000
s ce10.chrX             4180711 121 + 17718866 AACTTACATGAAGAGCGCAAAACTTTTCAATCATCTCGTTTTCTTTTCGGTATGCTCGAATAGTCGACAAACCATGGACAGTAGATGTAATAGTAGTGTTCAGTGGAGACCGAGCTGAAAT
s cb4.chrX              9287072 120 + 21540570 CACTCACATGAAGGGAACAGAATTTCTCCATCATCTCGGCTTCCTTACGGAAAGCTCTAATCGTGGCCAAGCCGTGAACTGTAGAAGTGATGATTGTATTC-GTGGGGAGCGAGCTGTAAT
i cb4.chrX              I 58 I 31
s caeRem4.Crem_Contig0  1151573 121 -  4500979 AACTCACATGAAGCGCACAGAACTTATCAATCATTTCCATTTCCTTTCTGTAGGCTCTGATCGTGGCCAGCCCATGTATGGTAGAAGTGATGATTGTGTTCAGGGGAGAACGAGCTGAAAA
i caeRem4.Crem_Contig0  I 22 I 30
s caeSp111.Scaffold630  6127243 121 + 20921866 AACTCACATGAAGAGAACAAAACTTCTCGATCATATCATTCTCTTTCCGGAACGCTCTGATAGTTGCCAATCCGTGGATTGTTGATGTAATGAGCGTATTCAAAGGAGAACGAGCTGGAAT
i caeSp111.Scaffold630  I 36 I 32
s caePb3.Scfld02_0      2442872  79 +  4147112 ------------------------------------------ctttccGATAAGCACGGATTGTTACCAGTCCATGAACAGTCGAAGTGATAAGAGTGTTCAAAGGAGATctagctgaaaa
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold17084  103484 118 -   375229 aacgtacATGCAATGTGTAGAACTTTTCTTCCATTTCCTTCTCTTTCCGGTACGCGCGGATTGTAGCCAACCCTCGAATTGTAGAAGTTATAATAGTGTTCAATGGAGATCGGGCAGA---
i caeJap4.Scaffold17084 C 0 C 0

a score=0.000000
s ce10.chrX             4180832 39 + 17718866 ATTCAAAACTGTTTTGTTTTCAAGAACCGCGAAGTAATG
e caePb3.Scfld02_0      2442951 35 +  4147112 I
e caeJap4.Scaffold17084  103602  0 -   375229 C
e cb4.chrX              9287192 31 + 21540570 I
e caeSp111.Scaffold630  6127364 32 + 20921866 I
e caeRem4.Crem_Contig0  1151694 30 -  4500979 I

a score=141526.000000
s ce10.chrX             4180871 297 + 17718866 CTTACCGGCTGCCTCAATTCTCTTCAATTCCCGTGAACGATGAACGTACATTTTCCTACAGAAGTAGAACCCTGCAGTTATGAACGCGCAGGCAAGAATGACAATAGGTCTGACCATGGAGACTAATCCAACTATTCCCACAAATGTCAACGTACCCTGTAAACAAAGTTGAA-GTT--------TGTTAAGATAATCAATAAATTATTGATAAACTTACAAAAACAAATTCAAAGTACGTGAACGCAAGCAAGTCATCAGTGAGGCCTATGTCTTTTGAAAAGCGATTCAGAATCATTCCT---AAAA
s cb4.chrX              9287223 295 + 21540570 CTTACCCGCAGCTTCGATTCTTTTCAACTCTCGGGATCTCACTACATAAATTTTTCTACAGTAGTAAAAACCGAAAGTGATGAGAGTGCAAGCAAAAAGGACAATAGGTTTGACCATTGTAACCAATCCAACGATACCGAGGAACGTCAAGCCACCCTGGA----AATTTATA-GAATGTAAcattaatt-----tttctgatat---tgaTAATTTTACAAAGACGAATTCAAAGTAGCAGAAAGACAGCATGTCGTCACACAAGCCAATGTCTTTGGAGAAACGGTTCAAGATTGCTcct-aaaaaa
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0  1151724 290 -  4500979 CTTACCAGCTGCTTCAATTCGTTTTAGCTCTCTTGACTTGACCACATAAATTTTCCGACATAAATAAAATCCAATAGTAATAAAAGTGCAAGCGATAATCACCACTGGTCTCACCATCGAAACAAGTCCAACGATACCGAGGAACGTCAACCCGCCCTGTA----ATTTAATA-ACA--------TAATTGCAGGTTGTGGacat-----aaaaacttacaaaaacaAATTCGAAATATGTGAAAGCCAACATATCGTCAGTGAGACCAATATCTTTTGAGAAACGGTTCAGTATTGCTCCT-AAAACA
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  6127396 294 + 20921866 CTCACCTTTAGcttcaattcttttcagttctcGAGATCTCACCACATATGTTCTTCGACAGTAATAGAATCCAAATGTGGTGAAAGCGCAAGCAAATATTACTACTGGCCTTACCATGGTGACTAGACCAACAATTCCGAGAAACGTCAATCCACCCTAAAACATAATTTATA-GTG--------AATTagtatttttgagaagt------ttcACTTACAAAAACAAACTCAAAATAGGTGAATGCTAAATTATCATCCGTGAGTCCAatgtcttttgaaaaacggtTGAGAATCATTCCTataaaca
i caeSp111.Scaffold630  I 32 C 0
s caePb3.Scfld02_0      2442986 288 +  4147112 tataCCGGTTGCTTCAATTCGTTTCAGCTCTCGAGATCTGGCCACATAgatttttctacagtaatagAAGCACACGGTTAATAGGcagcaaaaaagaatgacAATTGGCCGCACCATAGTTATTAGGCCAACAATACCAACGAAGGTCAATCcgccctgaaa---atttgatatgtT--------TACACATATAGTATGGAA---------CAACTTACAAACACAAACTCAAAGTAAGTGAATGCCAAATTGTCATCTGTGAGACCGATGTCTTTTGCAAAACGGTTCAAAATCATTCCT-TAAAGA
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold17084  103602 279 -   375229 ---------TGATTCAATACGTTTCAGTTCTCTGGATCGAAAAACGTAGAACTTTCTACAATAATAGAATCCAAGAGTAATTGGAATGCATGCAATTGACACAATTGGCCTAACCATCAGCACCAGACCAACGATTCCCATGAAGTTAAGAATTCCCTGAAG---CGATTGTACATA--------AACTTGCAGTTTTTAAGTGC-------AAACTCACAAAAACAAACTCGAAGTAGGTGAAAGCAAGCATATCATCCATTAGGCCAATATCTTTTGTGAACCGATTCAGAATTGTgcct-aaaa--
i caeJap4.Scaffold17084 C 0 I 601

a score=-12715.000000
s ce10.chrX             4181168 39 + 17718866 CCAACAATGT----TC--TAAAGACCCTA--GCCTGCCTAGACCCTA
s cb4.chrX              9287518 35 + 21540570 ttctcaatgatGTTTT------AAACCCA--AATGGCATTCTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152014 30 -  4500979 TTA-CAGTGA----GT------GGACTTA--ATCAGATCAGTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6127690 29 + 20921866 acaaaaataa----gc------GATTCTC--GTCAG--TAATT----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2443274 37 +  4147112 ATGTGAataa----ttattctgaattttcaaaccgA--TAATT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  103881 601 -   375229 I

a score=166449.000000
s ce10.chrX             4181207 526 + 17718866  
s cb4.chrX              9287553 535 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152044 531 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6127719 510 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2443311 519 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  104482 532 -   375229  
i caeJap4.Scaffold17084 I 601 I 156

a score=-363.000000
s ce10.chrX             4181733 118 + 17718866 AATACACTATTGGCTCTTTGGAATATGCTCTCC-----------TTGTTTATTTTCTCCATAGACTCGATATTTACTGGAGATGGTGGCGGAGACGAGGGAGGCCCGTCC---ACAAAAAGTTCATCGCTTT------
s cb4.chrX              9288088 116 + 21540570 CATTTCTCTCATGTTGTTGAAAATCTCATCGTC---------AGTGGTTTGCTTTGCC-------------TTGTTTGGAGTCGGTGGGGGAGAATCTGGAGTTTTCTCGTGTTTGTACAGCTCATCGTCATTGTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152575 122 -  4500979 CTTTTTCTTGATATCATTCACAACTTCctcatctttttcaaacatcatttgttttttc-------------tctgacGGTGAAGGAGGTGGAGAAGATGGTGAGCCTTCG---TTGTACaattcatcatcatttttgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6128229  90 + 20921866 -----------TCTCATTAAC----TCGTTTTT-----------GAGATGCTTTCCGT-------------TCTAAAGGAGATGGTGGAGGTGAAGACGGTGCACCGTGT---TTATAGAGTTCATCACATT------
i caeSp111.Scaffold630  C 0 I 20
s caePb3.Scfld02_0      2443830  96 +  4147112 -----------TCTCATTCACAAGACCATTTTT---------CACAGAACTTCTCTTT-------------CTTATTGGAGTCGATGGAGGACTAGATGGTAGTCCTTCG---TTGCATAACTCATCGTCCT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  105014 156 -   375229 I

a score=-3396.000000
s ce10.chrX             4181851 17 + 17718866 GAACTTCAGT----CTCGACA
s cb4.chrX              9288204 17 + 21540570 CCTCTTCGGAT---GCAGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152697 14 -  4500979 cgTCTGCG------CCGGAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2443926 20 +  4147112 GATCATTGGATGGGCTGGAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  105014 156 -   375229 I
e caeSp111.Scaffold630  6128319 20 + 20921866 I

a score=183.000000
s ce10.chrX             4181868 3 + 17718866 GCT
s cb4.chrX              9288221 3 + 21540570 ATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152711 3 -  4500979 GAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6128339 3 + 20921866 GGT
i caeSp111.Scaffold630  I 20 C 0
s caePb3.Scfld02_0      2443946 3 +  4147112 GAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  105014 156 -   375229 I

a score=111404.000000
s ce10.chrX             4181871 175 + 17718866 TGAAGCTTTATGAAGTCGTCAGTGAAAGTGGATTTCAGTTCGTCCAGAGATCCATTTCCGACCATTTTGTTGTTTTTCATAAGAATTACAGAGTCCAATTCGCTCAGGAAGTGAATTTGATGGGTGACGAGGATAACTAGCTTATCCGATAAGAATCCACGAATAAGGCTAAAAA
s cb4.chrX              9288224 174 + 21540570 TGCAAATGGatgaattc-tcagaaaaatttgTTCGGAGATCATCGAGAGTTCCTGACCCGATGAACTTGTTGTTTTTCATGAGGCACACGGTGTTCAATGTACCGAGGAAGTGGATCTGATGAGTGACGAGGACAACAAGCTTATCCGATAGGAATCCTCGGATAAGACTGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152714 175 -  4500979 TGCAGGCTGATGAActcttcagaaaaatttgtttttagttCATCAAGTGTTCCCATTGAGATCatcttgttatttttcatcAGGATCACCGAGCTCAATGTGCTCAGGAAGTGGATTTGATGAGTGACAAGGACAACGAGCTTATCCGATAAGAATCCACGAAtcagactgaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6128342 175 + 20921866 TGCAAGTTTATAAATTCCTCAGAGAAAGCGGATCTCAAGTCTTCTAATGTTCCGGATGCAatcattttgttgtttttcatcaagaTCACAGAGTTTAAACTATTGAGGAAGTGAATTTGGTGTGTGACAAGGATAACAAGCTTATCCGATAGGAATCCGCGGATTAAACTGAAAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2443949 175 +  4147112 TGCATGTTGATAAATTCATCTGAGTAAGCGGATTTCAGTTGGTTCAGTGTTCCGGATGCAATCATCATGTTGTTTTTCATCAGGATCACCGAGTTTAAACTATTGAGGAAGTGAATTTGATGTGTGACGAGGACAACGAGCTTATCCGATAAGTATCCGCGAATgagactgaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  105170 175 -   375229 TCTAATGTGAGAAATTCTTCGGGATAACAAGTTTTCAAATCTTCCAGACTGCCTGTTCCAATGGCGAAATGATCACGCATAAGAATTATGGCTTTGGCACTGctcaaaaagtgaatttgatGAGTGACAAGAATCACTAACTTGTTGGAGAGATGTCCCCTAAttaatctgaaaa
i caeJap4.Scaffold17084 I 156 I 34

a score=-4807.000000
s ce10.chrX             4182046  5 + 17718866 ATTAT-------
s cb4.chrX              9288398 11 + 21540570 CTATGGTATAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1152889  5 -  4500979 -------ataat
i caeRem4.Crem_Contig0  C 0 I 454
s caeSp111.Scaffold630  6128517  5 + 20921866 ATTGT-------
i caeSp111.Scaffold630  C 0 I 47
s caePb3.Scfld02_0      2444124  5 +  4147112 tttga-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  105345 34 -   375229 I

a score=-106.000000
s ce10.chrX             4182051 95 + 17718866 TGTGCCATTAAAAAATAAAAGTTTAC-TTGAGGGACTACTAGTGAAGTTAAGATGAAAGACTAACAGGAAAATTCCGGGACTTTCTTAAATTTTCA
s cb4.chrX              9288409 88 + 21540570 TTTACCAGCAGAGAACATAATTTCAAGTCAGTGGAAAAT------AGTTGagatcattgaa--aaatgaaatttgggggatttttgaaagttatga
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2444129 89 +  4147112 --tcGTTGTAGAAAACAAGATTGTGA-CGGACAGAAaatttgagcagaaaaaatttttgaa-gaaaagggaTC---GAAattttatacaattttta
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold17084  105345 34 -   375229 I
e caeSp111.Scaffold630  6128522 47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=160.000000
s ce10.chrX             4182146 58 + 17718866 GATGAGTGACTACTAGGGGAATACCAAAAGTGGCTTTATTTTCAAAAGCATTTCAAAT
s cb4.chrX              9288497 51 + 21540570 aATGA-------CCGGGAGCAGAGAAAGTATACCGGacctttcaaaattattaaaagT
i cb4.chrX              C 0 I 101
e caePb3.Scfld02_0      2444218 42 +  4147112 I
e caeJap4.Scaffold17084  105345 34 -   375229 I
e caeSp111.Scaffold630  6128522 47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=0.000000
s ce10.chrX             4182204 104 + 17718866 GTTTGGTGCATTCTGCTACATTATCCGTACTTAAAGTATATAATTAAAAAAACTCAGAGTGATTTGAATGAGAAAATAAAATTATAAGAAAGACATGGCTTCCT
e caePb3.Scfld02_0      2444218  42 +  4147112 I
e caeJap4.Scaffold17084  105345  34 -   375229 I
e cb4.chrX              9288548 101 + 21540570 I
e caeSp111.Scaffold630  6128522  47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=590.000000
s ce10.chrX             4182308 62 + 17718866 ATATTGTTGGATTAGGTTCTGCTTAAAAATTTAAGCACGCAACAGTTTGTTTTAAAAAATTC
s cb4.chrX              9288649 40 + 21540570 atattggtg----atattatgacaaaagATCTAGGCA------------------AAAAttc
i cb4.chrX              I 101 I 66
e caePb3.Scfld02_0      2444218 42 +  4147112 I
e caeJap4.Scaffold17084  105345 34 -   375229 I
e caeSp111.Scaffold630  6128522 47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=0.000000
s ce10.chrX             4182370 75 + 17718866 AAGCCATGTAAAAAAATTTGGATGAAAATTTCAAAACATAAGAAAACATTGTTTTTGAAACGCATCATATTTAGT
e caePb3.Scfld02_0      2444218 42 +  4147112 I
e caeJap4.Scaffold17084  105345 34 -   375229 I
e cb4.chrX              9288689 66 + 21540570 I
e caeSp111.Scaffold630  6128522 47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=-4903.000000
s ce10.chrX             4182445 635 + 17718866  
s cb4.chrX              9288755 378 + 21540570  
i cb4.chrX              I 66 C 0
e caePb3.Scfld02_0      2444218  42 +  4147112 I
e caeJap4.Scaffold17084  105345  34 -   375229 I
e caeSp111.Scaffold630  6128522  47 + 20921866 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=-283.000000
s ce10.chrX             4183080 3 + 17718866 AAA-
s cb4.chrX              9289133 3 + 21540570 -AAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6128569 3 + 20921866 AAA-
i caeSp111.Scaffold630  I 47 C 0
e caePb3.Scfld02_0      2444218 42 +  4147112 I
e caeJap4.Scaffold17084  105345 34 -   375229 I
e caeRem4.Crem_Contig0  1152894 454 -  4500979 I

a score=-69.000000
s ce10.chrX             4183083 1 + 17718866 A
s cb4.chrX              9289136 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1153348 1 -  4500979 A
i caeRem4.Crem_Contig0  I 454 C 0
s caeSp111.Scaffold630  6128572 1 + 20921866 A
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2444218 42 +  4147112 I
e caeJap4.Scaffold17084  105345 34 -   375229 I

a score=302840.000000
s ce10.chrX             4183084 494 + 17718866  
s cb4.chrX              9289137 491 + 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0  1153349 476 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold630  6128573 480 + 20921866  
i caeSp111.Scaffold630  C 0 I 20
s caePb3.Scfld02_0      2444260 494 +  4147112  
i caePb3.Scfld02_0      I 42 I 21
s caeJap4.Scaffold17084  105379 507 -   375229  
i caeJap4.Scaffold17084 I 34 C 0

a score=0.000000
s ce10.chrX             4183578 15 + 17718866 AATAACAGTTGCATC
e caePb3.Scfld02_0      2444754 21 +  4147112 I
e caeJap4.Scaffold17084  105886  0 -   375229 C
e cb4.chrX              9289628 15 + 21540570 I
e caeSp111.Scaffold630  6129053 20 + 20921866 I
e caeRem4.Crem_Contig0  1153825 14 -  4500979 I

a score=144405.000000
s ce10.chrX             4183593 561 + 17718866  
s cb4.chrX              9289643 546 + 21540570  
i cb4.chrX              I 15 I 3
s caeRem4.Crem_Contig0  1153839 551 -  4500979  
i caeRem4.Crem_Contig0  I 14 I 3
s caeSp111.Scaffold630  6129073 510 + 20921866  
i caeSp111.Scaffold630  I 20 C 0
s caePb3.Scfld02_0      2444775 506 +  4147112  
i caePb3.Scfld02_0      I 21 I 65
s caeJap4.Scaffold17084  105886 604 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=1491.000000
s ce10.chrX             4184154 11 + 17718866 AATTATATTTT
s cb4.chrX              9290192 11 + 21540570 cattataattt
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1154393 11 -  4500979 aacaaaagttC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  6129583 10 + 20921866 -AATAtgtttt
i caeSp111.Scaffold630  C 0 I 29
s caeJap4.Scaffold17084  106490 11 -   375229 atttaaatatt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I

a score=546.000000
s ce10.chrX             4184165 1 + 17718866 T
s cb4.chrX              9290203 1 + 21540570 t
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0  1154404 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 6
s caeJap4.Scaffold17084  106501 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I
e caeSp111.Scaffold630  6129593 29 + 20921866 I

a score=340.000000
s ce10.chrX             4184166 3 + 17718866 GGT
s caeRem4.Crem_Contig0  1154411 3 -  4500979 GAT
i caeRem4.Crem_Contig0  I 6 I 12
s caeJap4.Scaffold17084  106502 3 -   375229 aat
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I
e cb4.chrX              9290204 16 + 21540570 I
e caeSp111.Scaffold630  6129593 29 + 20921866 I

a score=151.000000
s ce10.chrX             4184169 3 + 17718866 AGA
s caeJap4.Scaffold17084  106505 3 -   375229 aaa
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I
e cb4.chrX              9290204 16 + 21540570 I
e caeSp111.Scaffold630  6129593 29 + 20921866 I
e caeRem4.Crem_Contig0  1154414 12 -  4500979 I

a score=0.000000
s ce10.chrX             4184172 644 + 17718866  
e caePb3.Scfld02_0      2445281  65 +  4147112 I
e caeJap4.Scaffold17084  106508   0 -   375229 C
e cb4.chrX              9290204  16 + 21540570 I
e caeSp111.Scaffold630  6129593  29 + 20921866 I
e caeRem4.Crem_Contig0  1154414  12 -  4500979 I

a score=180.000000
s ce10.chrX             4184816 12 + 17718866 ACATA----TCACATA
s caeJap4.Scaffold17084  106508 16 -   375229 acATAATGTTCAAAGA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I
e cb4.chrX              9290204 16 + 21540570 I
e caeSp111.Scaffold630  6129593 29 + 20921866 I
e caeRem4.Crem_Contig0  1154414 12 -  4500979 I

a score=273.000000
s ce10.chrX             4184828 1 + 17718866 T
s caeRem4.Crem_Contig0  1154426 1 -  4500979 T
i caeRem4.Crem_Contig0  I 12 C 0
s caeJap4.Scaffold17084  106524 1 -   375229 T
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2445281 65 +  4147112 I
e cb4.chrX              9290204 16 + 21540570 I
e caeSp111.Scaffold630  6129593 29 + 20921866 I

a score=910.000000
s ce10.chrX             4184829 1 + 17718866 A
s cb4.chrX              9290220 1 + 21540570 A
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0  1154427 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2445346 1 +  4147112 a
i caePb3.Scfld02_0      I 65 C 0
s caeJap4.Scaffold17084  106525 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6129593 29 + 20921866 I

a score=81858.000000
s ce10.chrX             4184830 152 + 17718866 -ACTTACTCTCTGAGAATTCGGATTTTTTCAGCAAACGCATTCTCCCATCCATGCATTTTGATAACTTTGATTCCATTAATGATCTCACTCATGACTTTCAACCTTGAGTCCATTTTGTCACCGATGTTACGTCTGAAAGAAAGTTCTTAAAA
s cb4.chrX              9290221 135 + 21540570 -ACTCACTTCCGAAGCTCCAGGATTTTGTCGGCAAACGAGCTCTCCCAACAGATCATTTTGATAACTCTCATACCGTTAATCAGTTCACTCATCACTTTCAAACGATCATCCATACgatcaccaatatttttacGG-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1154428 135 -  4500979 -ACTCACTCTCTCAGCTGTTTAATTTTTGCAGCGAAGTTGTCCTCCCAAACGAGCATTTTGACTACTTTCATCCCGTTTATAATTTCACTCATGATTTTCAATCTCGCATCCATTCTATCACCAATATTACGTCTG-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6129622 135 + 20921866 -ACTCACTCTCtgagtacagtaatcttatcAGCAAATGCTTTCTCCCATCCGTGCATTTTGATAACTTTCATTCCTTTGATGATTTCACTCATCACTTTCAGTCTTAAATCCATTTTGTCCGCAATATTCCGGCGA-----------------
i caeSp111.Scaffold630  I 29 C 0
s caePb3.Scfld02_0      2445347 135 +  4147112 -actCACTCTCTCAAAGCTTGAATTTTCTTGGCAAATGCATCTTCCCAGCCGAGCATCTTGATAACATTCATTCCATGGATAGTTTCACACATTGTTTTCAAACGGGAATCCGCTTTACCGGCAATGTTTTTCCTA-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  106526 153 -   375229 AGCTCACTCTCGAAGAACTTCAATCTTTTTGGCGAATGCGGTTTCCCATCCATGCATTTTGATAACTTTGATTCCGTTGATAATTTCACTCATTACTTTTAACCTAGCATCCATTTTATCTCCGAGTTTCTTTCTGAAAAAGCAACACCAAAA
i caeJap4.Scaffold17084 C 0 I 39

a score=0.000000
s ce10.chrX             4184982 21 + 17718866 ATCCCATTGCTCACGCGAGCA
e caePb3.Scfld02_0      2445482  0 +  4147112 C
e caeJap4.Scaffold17084  106679 39 -   375229 I
e cb4.chrX              9290356  0 + 21540570 C
e caeSp111.Scaffold630  6129757  0 + 20921866 C
e caeRem4.Crem_Contig0  1154563  0 -  4500979 C

a score=271333.000000
s ce10.chrX             4185003 611 + 17718866  
s cb4.chrX              9290356 587 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1154563 592 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6129757 589 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2445482 593 +  4147112  
i caePb3.Scfld02_0      C 0 I 72
s caeJap4.Scaffold17084  106718 611 -   375229  
i caeJap4.Scaffold17084 I 39 C 0

a score=-829.000000
s ce10.chrX             4185614 38 + 17718866 GAGTTCTTTTTGGGCCACTCGAAATCCATTTGCTAAAA
s cb4.chrX              9290943 38 + 21540570 GACGGCCTTTTGCATCAGGGGTGTTCCAAGCACTGTAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1155155 38 -  4500979 GCCTATCTGGGGATCCGTTTGAGCTCCACgcactgaaa
i caeRem4.Crem_Contig0  C 0 I 122
s caeSp111.Scaffold630  6130346 38 + 20921866 TACCGTTCAACGGACCATTTTTATTCCAGGCGCTTAAA
i caeSp111.Scaffold630  C 0 I 48
s caeJap4.Scaffold17084  107329 30 -   375229 TTTCCTTTAGCACACCATCTTT--------TACCAAAA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2446075 72 +  4147112 I

a score=-74.000000
s ce10.chrX             4185652 21 + 17718866 AATGCAATTTCTTTA-AAGTCG
s cb4.chrX              9290982 22 + 21540570 AATAAAACCATACGATAAACCG
i cb4.chrX              I 1 C 0
s caeJap4.Scaffold17084  107359 11 -   375229 ----------CTCTA-AAATCG
i caeJap4.Scaffold17084 C 0 I 23
e caePb3.Scfld02_0      2446075 72 +  4147112 I
e caeSp111.Scaffold630  6130384 48 + 20921866 I
e caeRem4.Crem_Contig0  1155193 122 -  4500979 I

a score=319.000000
s ce10.chrX             4185673 32 + 17718866 TTTAGCAAT----ATTTCCTAGTCGGTAGAGACTCA
s cb4.chrX              9291004 36 + 21540570 TTGAGAAAGGTTAATTAAATAATCCGTTGTGATTCA
i cb4.chrX              C 0 I 194
e caePb3.Scfld02_0      2446075 72 +  4147112 I
e caeJap4.Scaffold17084  107370 23 -   375229 I
e caeSp111.Scaffold630  6130384 48 + 20921866 I
e caeRem4.Crem_Contig0  1155193 122 -  4500979 I

a score=0.000000
s ce10.chrX             4185705 200 + 17718866 GTTTTCTCACTCGAAAAAACTGTAACTTTTTAGAGCAGATCTTGATTGATTTCCAAAATTTCTCTCTACTAGTTTTCTCTTCTAGTTTTATATCAACTTCACAGAAAACTTTATATACCATATTTTCCCAGAGTCTTCATTATATTTTTACTATTCCAATTTGCGTGGTATGTATGTTTTCAGATTTTTTTTTCAAGACT
e caePb3.Scfld02_0      2446075  72 +  4147112 I
e caeJap4.Scaffold17084  107370  23 -   375229 I
e cb4.chrX              9291040 194 + 21540570 I
e caeSp111.Scaffold630  6130384  48 + 20921866 I
e caeRem4.Crem_Contig0  1155193 122 -  4500979 I

a score=-1894.000000
s ce10.chrX             4185905 267 + 17718866 AATAGGTAATATT-----GTAATGATCTAAACCTTAATTTCTTGACAC-CCCCAATATTCATCAGATCACATAGATGAATCTT--ATCAGACAAAATACTCCCAGAAATATTTAC--------------------------GTGCAATTCGTAATATTCA---------AAATGTTGAC-----------------------TCAACGATTTTTGT----TTAATCATGAGTCATAACCAAATAATT-AATTTCTTTCCCTAGATGATTTA-AATTTTTCGGCT--------------------------CAATGGAAT--TTGACTATGAGG----------AAAACTGC----TGATAGAAAAATTGAAAC------GCATTAAT
s cb4.chrX              9291234 387 + 21540570 aagaagcaaCAATTCTAAGTGCTGAAATGAGAATCAATTTGTAAACATGTAACAAAAAGTAGTAAATtataaatctgaaactttaatTCTGTACAGTATACTCAgaagtttttgtaattttcaaacttgttggaaaatttggaacaattgatatttttccagGTACATTAATTGTTGACGGTTTCAGAGAAAAGTACAATTGTCAGTTGTCTTTATACTGCCAGTTAGGCGGCAGAGTCAAcaaatgaaatgtttctcGTGAAATTACTAACAATGTATCGGTTGACAAAACCTTGATATCTATtgaaggaaatgagataattaagcaTAAAGTGCACGGGAAAAAATTGCTATTTAATAGAGCACTTGAAGTATCATggtattgaa
i cb4.chrX              I 194 C 0
e caePb3.Scfld02_0      2446075  72 +  4147112 I
e caeJap4.Scaffold17084  107370  23 -   375229 I
e caeSp111.Scaffold630  6130384  48 + 20921866 I
e caeRem4.Crem_Contig0  1155193 122 -  4500979 I

a score=-1778.000000
s ce10.chrX             4186172 12 + 17718866 A---ATCTCCTTC-----CT
s cb4.chrX              9291621 20 + 21540570 aaatatctcCCACAAAAACT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  107393 12 -   375229 aattctcttttt--------
i caeJap4.Scaffold17084 I 23 C 0
e caePb3.Scfld02_0      2446075 72 +  4147112 I
e caeSp111.Scaffold630  6130384 48 + 20921866 I
e caeRem4.Crem_Contig0  1155193 122 -  4500979 I

a score=680.000000
s ce10.chrX             4186184 3 + 17718866 ACA
s cb4.chrX              9291641 3 + 21540570 TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1155315 3 -  4500979 act
i caeRem4.Crem_Contig0  I 122 C 0
s caeSp111.Scaffold630  6130432 3 + 20921866 act
i caeSp111.Scaffold630  I 48 C 0
s caeJap4.Scaffold17084  107405 3 -   375229 aca
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2446075 72 +  4147112 I

a score=87597.000000
s ce10.chrX             4186187 161 + 17718866 TACCTTTCGAGCTTCTGTGCCGCATATTTTGCAGAAATTCCTTTTGATGGCTTTTCGAGCAGATCCGTGTCAGTTTGAGCATTTCTAGTTCTCCACCAGTAGAAACCGACAAAAGAAAACAGAATGCTACTGATCAATCCGGCGCTATCTTCGGAACTTGG
s cb4.chrX              9291644 161 + 21540570 CACCTCTCAAGTCTCGCAGACGCATGAGCAGCGGTGATCTTTTTTGACGGTTTCTCCAATAATTCAGCATCAGTCTTGGCGTGTTTCGTCCTACTCCAGTAAGTCCCTACATACGAGAATAAAATCCCACTGAAGAATCCAGCATTGTCCTCTGAACTCGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1155318 161 -  4500979 cacttttctaaTCGTGATGCTGCATAGACGGCTGTGATCTTCTTTGATGGTTTCTCCAACAATTCTGCATCTGTTGTTGCATTTCTCGTCCTCCACCAATAAACTCCAACATACGAAAAAATGACACTACTGAAGAATCCCGCTTTGTCTTCTGAGCTCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6130435 161 + 20921866 cacttttgaagtttcttgGCTGCTCTTTCCGCTGTGATCCTTTTTGACGGCTTCTCCAATAATTCAGCGTCTGTAGTTGCTTTTCGCGTTCTCCACCAGTAGAATccaacaaaagaaaacaaaactcgACTTATCCAATTGGCGTTATCTTCCGAACTTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2446147 161 +  4147112 TACTTCTCAAGTTTTGCAGCAGCTGATTGAGCATTTAtcttttttggtattttttcaaGCAACTCAGCATCATCAGTTGCATTTCGTGTCCTCCACCAGTAGAATCCAACATAGGCGAATAGAATCCCGCTGAGCCAATTAGCTGATTCTTCGGAACTTGG
i caePb3.Scfld02_0      I 72 C 0
s caeJap4.Scaffold17084  107408 161 -   375229 cacttttctaattttttcccggCGTATGCAGCAGTGAATTGCCGTGACGGTTTTTCCAGCATTTCCTCATCTTTTGTTGCATTTCTGGTTCTCCACCAATAGGCTCCAACAAAAGTGAAAAAGAGCCCGCTTAGAACTCCTGCGCGATCTTCTGAGCTTGG
i caeJap4.Scaffold17084 C 0 I 5264

a score=1448.000000
s ce10.chrX             4186348 140 + 17718866 ATGATAGCCTTCTACACTCTCTAGGTTG---------ACATCCGGTTTTGTT------TCATCAGGTGTCTTCTG--------AAAGTGTGGA-----ATCATTTTCTTTTGTCAGAT---AAT--------TTCTATAGTCTGCAGAAACAACACCTGTTTGGTGACAGGTGCAGTTT
s cb4.chrX              9291805 163 + 21540570 ATAAAAATGCTCGACACTGTCCAACTCATTTGTCATCACAACTGCCTTCTCA------TCGTTCTGTGGATCCTAAATTGGATAAATTGACCA-----AT--TTACTCTTTGTGTGGTCAGTATTGCCCCATTTTTATTATT---GTGAACACCACCTGCTTTTCAACAGGTGCACCTT
i cb4.chrX              C 0 I 3386
s caeRem4.Crem_Contig0  1155479 166 -  4500979 ATGAAATCCTTCGACTCCATCCAATCTGCTTCGTTTCCTAATTGGTGT---A------TTTTTATGGATATCCtgacttttctgaaagaataatAGGGTT--TTTCGTATTGTGTGGTTTGAAT--CATCGGTTTtatgaatgaagaaaagaacacCTGGCAAGCCGCAGGTGTAATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6130596 154 + 20921866 ATGAAATCCATCGGTATTTtccaattcgttttttcctgCTGTTGGTTCTCCA------TTTCTTACTGGTCTCTG--------AAAATCGCAC-----AT--TTTTCTAATGTGAGGTCAAAAC----GATTCTGTCTTAATAAGAGAAAGAACACCTGCCATCTGCCAGGTGCTATGC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2446308 155 +  4147112 GTGAAAATCATCGGTGCTTTCTAACCCG---TTTCCTTTCTTTGTCTCGTCAATCGACTCTTTCTCTGGTTTCTG--------GAATTCGTTC-----GT--TTTTCACTTGTGAGGTC-AAAC----GAGGTTCCCTGAATAC-AAAAAGAACACCTGGACAGAGACAGGTGCATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=4658.000000
s ce10.chrX             4186488 22 + 17718866 GCATAA-ATTC-ATGTGGTAAAAT
s caeRem4.Crem_Contig0  1155645 24 -  4500979 GAATGGTTTTTAATGCGGTGAAAT
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  6130750 23 + 20921866 TAAGAG-ATTTAATGtgatgaaat
i caeSp111.Scaffold630  C 0 I 1436
s caePb3.Scfld02_0      2446463 23 +  4147112 GAATGA-TTTTAATGCGGTGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9291968 3386 + 21540570 I

a score=-1129.000000
s ce10.chrX             4186510  6 + 17718866 -TTGTAG---
s caeRem4.Crem_Contig0  1155678 10 -  4500979 ttattgaaaa
i caeRem4.Crem_Contig0  I 9 C 0
s caePb3.Scfld02_0      2446486  6 +  4147112 -AAGTGG---
i caePb3.Scfld02_0      C 0 I 2968
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9291968 3386 + 21540570 I
e caeSp111.Scaffold630  6130773 1436 + 20921866 I

a score=2481.000000
s ce10.chrX             4186516 288 + 17718866 TAGCAGATGG-----------------------------CTACCGTAGAATACTGTCT------------AACAGCTAAA-----------------ATCAAAGAGCTTTTTTAAAA--TGAAAATGAAAATT---CAAAATTAACATTTTAAATTCGTAATTAGAGTTAATATGTAAATCAATGTAAACTAACTTTCAAGTCCTCTTTCTGTTCGATGAGTAGAGTTTCATTTTCCTTGT------------TCGACTTTCTGGGACTTGATATTGACATGTCT-TTGTACCTAAAAATCAGTTC--ACTTAAACAAAAAACCAAAATCAGAAAAAAAAAAAGCAGCGACAAAACAATAGGAAAG
s caeRem4.Crem_Contig0  1155688 352 -  4500979 gaacAGATGGTAaggttttttgttggaaaatagTAGCAATTCCTTTTGAATTATGttttgaggaaaaagaagaagctggATGGTGATTCTGTCCAGTATCAAATACAATCTTTAAAAGTTAGTAATGGAAATTCCACGAAGAAAAGTTTTTACTCTTttaagaagattt----------tttttctaaactaaCCTTTTGACTATCCGTTTTGTCGATAAGCAAAGCTTTATGTTCTGTATCTAATCTATCCGTGGATGTTCTTGGATTTGATATTGACATACTTGGTTTACCTGAAAATTACTTTAAATTGAATCAGATTATTCaact----agaaaagaaaataacgaCCAATAAATAGTGAAG
i caeRem4.Crem_Contig0  C 0 I 1631
e caePb3.Scfld02_0      2446492 2968 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9291968 3386 + 21540570 I
e caeSp111.Scaffold630  6130773 1436 + 20921866 I

a score=0.000000
s ce10.chrX             4186804 1654 + 17718866  
e caePb3.Scfld02_0      2446492 2968 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9291968 3386 + 21540570 I
e caeSp111.Scaffold630  6130773 1436 + 20921866 I
e caeRem4.Crem_Contig0  1156040 1631 -  4500979 I

a score=91.000000
s ce10.chrX             4188458 1 + 17718866 A
s caeSp111.Scaffold630  6132209 1 + 20921866 A
i caeSp111.Scaffold630  I 1436 C 0
e caePb3.Scfld02_0      2446492 2968 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9291968 3386 + 21540570 I
e caeRem4.Crem_Contig0  1156040 1631 -  4500979 I

a score=-1748.000000
s ce10.chrX             4188459 24 + 17718866 ATTAATTTTCATTAAGATTCGAGG---------
s cb4.chrX              9295354 23 + 21540570 ATGAGTCGTCATTTGGA-ACGAGA---------
i cb4.chrX              I 3386 C 0
s caeSp111.Scaffold630  6132210 26 + 20921866 ACAAAGTTTCAC-------CAAGCTGCTCTCAG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2446492 2968 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeRem4.Crem_Contig0  1156040 1631 -  4500979 I

a score=967.000000
s ce10.chrX             4188483 11 + 17718866 AGCTCTTGAGC
s cb4.chrX              9295377 11 + 21540570 AGTTTTGACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1157671 11 -  4500979 AACTCCTCCGT
i caeRem4.Crem_Contig0  I 1631 C 0
s caeSp111.Scaffold630  6132236 11 + 20921866 AActtttgtgg
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2446492 2968 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=71559.000000
s ce10.chrX             4188494 277 + 17718866 AAAAAAAAAGATT--TTACAAATGCGGGCTATA---TATCTAAAC-----AAAGGAAATAAATG-AGCC----ACACAGCATGCCCTTTCATTGAGAAGCATGAACATCAAGAGGGCGGCCAGTGAAATGAAGACAAGAGGAA---GCGGATAACTTGACT---ATAGCCTCTGCGTCTTACTTTTACTC------TTGCCGAACGTATGACTA-----------AGG-ACATTGGGGGAGACGGACGTGTGA---------AGAAGGTACTTG-----------TTTTTCGAAACTTTACGTA--GTTTCCCAT--------GCTT---CCCAGG----------------------------AATAGGTGACAAA
s cb4.chrX              9295388 306 + 21540570 ATAAAGGAAGCAGGTTTAGATATGTGAGCCTTC---CCCgtaggagaagaaaaagaaataaatg-aGGGTTGAGCAGAGAGTGTCCTCTCATAGAAGAGCATGAACATCAAGAGAGCGGCCAGCAAAATGAAGACAACGGGAAGACGAGGATAACCTTACT-----AGCATCTGCTTCTAAGGTTGGGAAAGTAGACAGCTGTCCAAGTGGCTA-------------GTGGAAGAGGGGCAACTCA------AGGACA----ATGGAGGGCTTG---------atgttttcgaaacttttcgtatctttttcctaatttctCAGGTT---ATGTGGA---------------------------AATAAGAGACAGA
i cb4.chrX              C 0 I 698
s caeRem4.Crem_Contig0  1157682 306 -  4500979 AAAAACGTAGCTTTTTTGGATATGTGAGCCGCCGTATATCTaaacgaaagaaaagaaataaatg-agaCCCGAGCAGAGAATGCCCTCTCACAGAAGAGCATGAACATCAAGAGAGCGACC-----AATGAAGACAACAGAAA---GAGGATAACCTTACTACGACAACATCTGCGTCT-----------------TACTCGAACAAATGACTA-------------A-GCAAGAACACAAACACATTT-TGGTGGCA----AGAAGTCActtg-----------tttttcgaaagttttcgtaacttttt------------gatt---atgagaagaaaggtggtgaaatgagaagatgaagaataaaaggaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6132247 310 + 20921866 aaaaaaggagCCG--TTGGATATGTGAGACGTA---TATCtaaacgaaagaaaagaaataaatg-agGCCTGAGCAGAGAGTGTCCTCTCATAGAAGAGCATGAACATCAAGAGAGCGACCAGTCAAATGAAGACAACAAAAA---GCGGATAACCTTACTACTACAACATCTGCGTCTGACTT------------TTGTCGAACATATGACCACAGAGGATTCCGGG-ATGAGAAGACAATCACACGTCTTGAAGCCAAGTACAAGGCCATCG----AGCGTatgttttcgaaacattACGTA--ATTTT------------ACTTgtattgagaa---------------------------aatgaaagaaaaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2449460 300 +  4147112 AAAAAAGGAGCTATCTTGGATATGTGAGCCGTA---TaacgaaaagaaagagaagaaataaatgaagGTCTGAGCAGAGAGTGTCCTCTCATAGAAGAGCATGAACATCAAGAGAGCGTCCAGTCAAATGAAGACAACAGAAA---GAGGATAACCTTACTCCTACAACATCTGCTTC------------------TTGGTGAACATATGACTA-ACCGGGTGTTTGG-GTGACAGAACAATCTTACGT-TGAAAACCAACcatgagaaaaatgtgaaggtttctgttcttcaaaaat--------attcg------------aatt---ttgaaaa---------------------------aatgagagaaaac
i caePb3.Scfld02_0      I 2968 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=34379.000000
s ce10.chrX             4188771 203 + 17718866 --------------------------G----TTTGAAACAAGGA-------------------ATAGTGTGCAT----TTGAAAATGAAAAGTGGCGGA------GACTTTTGT-AACTTTTTTGTACCATT------TCCCTGATATTGTTTCTACCAC-----TTT-----------------TGATGTTGTAGAGTTGATACATTTTGTTGCAGACGCAGGGA-----GAGAAGATAGAA-AATAA--TTTTAATTTCGTGATCATCACGACACATGCTCTTGTTGCTTTTCCTTT
s caeRem4.Crem_Contig0  1157988 270 -  4500979 ----atgg-gaaacaaaaaa---atgg----tggGAACTATCGAACGTGTTGTTTCTCTATCTATTATGTGCACACAAAAGTAGGTgacaagagagagagaaaggggtTTTTGTCCACCGTTTTgtatcttc------tccttctttccgCTTTTCTTTCCCAAACTT------TTGCGACTATTTGATATTGCAGTGTTAACACAATCCAATGTAGACGCAGGAAGTATGAAAGAGATGAgtgaagaa--tttcaatttaagAA---TGACGACACATGCTCttgatgattttcattt
i caeRem4.Crem_Contig0  C 0 I 515
s caeSp111.Scaffold630  6132557 270 + 20921866 atgagagg-agaacaagagaga-atggtaaatggaaaatatggaaCGTGTTGTTGC----TCTATTGTGTGCACAGAACTGTTGGTGACAAGAGA----------GGtttttgtccaccgttttgtatcttcattttttcttcccatttttttctctttt-----ttttccgactTCCGACTATTTGATATTGAAGTGTTAACACAATCCAATGTAGACGCAGGAA----TGAGAAGATGcga-aagaatttttcaatttaaaga---TGACGACACATGCTcttgattcttttcattc
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2449760 253 +  4147112 gGAAGAGGAAGGACAACAGAAATATGG----TGGGTATTATGGTAAGTGTTGTTTC----TCTATTGTGTGCTTAGAACTGTTGGTGATAAGAG-----------GGTTTTTGTTCACCGTTTTGTATCtgc------tcctttcttttttttttctttt-----ttt------ttcttattttcttagATAGGAGTGTTGGCACAATCCAGTAGAGACGCAGTAG-----AAAAAGATGTGC-AAGAA--TTTCAATTTAAAGAT--TGACGACACATGCTCTTGATTCTCCACATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9295694 698 + 21540570 I

a score=329.000000
s ce10.chrX             4188974 2 + 17718866 CC
s caeSp111.Scaffold630  6132827 2 + 20921866 tc
i caeSp111.Scaffold630  C 0 I 295
s caePb3.Scfld02_0      2450013 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9295694 698 + 21540570 I
e caeRem4.Crem_Contig0  1158258 515 -  4500979 I

a score=91.000000
s ce10.chrX             4188976 1 + 17718866 A
s caePb3.Scfld02_0      2450015 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 667
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9295694 698 + 21540570 I
e caeSp111.Scaffold630  6132829 295 + 20921866 I
e caeRem4.Crem_Contig0  1158258 515 -  4500979 I

a score=0.000000
s ce10.chrX             4188977 969 + 17718866  
e caePb3.Scfld02_0      2450016 667 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9295694 698 + 21540570 I
e caeSp111.Scaffold630  6132829 295 + 20921866 I
e caeRem4.Crem_Contig0  1158258 515 -  4500979 I

a score=686.000000
s ce10.chrX             4189946 35 + 17718866 GTTTTTAAAAACGAGAATATGTATCAAAGCT-----CAAC
s cb4.chrX              9296392 40 + 21540570 GTTGTTAAaaactcttatttttttcaaaaataataccAAC
i cb4.chrX              I 698 C 0
e caePb3.Scfld02_0      2450016 667 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeSp111.Scaffold630  6132829 295 + 20921866 I
e caeRem4.Crem_Contig0  1158258 515 -  4500979 I

a score=-2959.000000
s ce10.chrX             4189981 46 + 17718866 TCGGATTGCAAAACCGCATGAA-------AACTTTCTTTAAACTTCTATTAA------T
s cb4.chrX              9296432 42 + 21540570 -----TCGc----actcaaaaa------caattttc--caaaaacatttcaactcGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1158773 41 -  4500979 TCGAATTGA----CCTCATAAATTCAGTCAAT-------GAGTGCCTATCAA-------
i caeRem4.Crem_Contig0  I 515 C 0
e caePb3.Scfld02_0      2450016 667 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeSp111.Scaffold630  6132829 295 + 20921866 I

a score=2734.000000
s ce10.chrX             4190027 17 + 17718866 AAACTTCTAAGAAAAAT
s cb4.chrX              9296474 17 + 21540570 GGGCTCTCAAATGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1158814 17 -  4500979 GAAATTCTCAATGAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6133124 17 + 20921866 AAAACTCTTAATAAATT
i caeSp111.Scaffold630  I 295 C 0
e caePb3.Scfld02_0      2450016 667 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=61760.000000
s ce10.chrX             4190044 189 + 17718866 ATAATT--AGTGC---GATGTTGA-TGAGAAATGAG--------------CAAGAAATGT--GGGCTCCTTCGGGTTGAAAATGAGGAATAATCGCGAGAGACCGAGG-----------------GACAGAGCGTTTGAAAA-GACGGC--TCGGGG---ACCGAACTTGACGAACCGGATTAGACAC--GAACGGGAACGAAGG----TACAGAACGTCCTCGTTT--------------------------------TTTACGAAAAAGA-------------------------
s cb4.chrX              9296491 228 + 21540570 ATAATCGAAGTGTTGAAAGGCTGg--atgaaatgagaaaagaaaaaagaaagagaaaggtTGTGGCGTC------TTGAAAATGAGGCATAATCGCAAGAGATAGAGACACAGAAAGGGCCCGTCGGCCGggcgttttcgaa-aaaagccgTCGAGTCGCTTTGAACTTGACGAAACGGATT--------AGACAGAAACTAAGGTGTATATAGAACGTCGACTCTT---------------------------TTTGGTATAcgaaaagga-------------------------
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0  1158831 225 -  4500979 ATAATTGAAGTGC---AAAGCCGGCcaagaaatgag--------------agagaaacgT--TGGCGTCTTC-ggttgaaaatgaggaataaTCGCGAGAGACACAGG-----------------GACCGAGCGTTTGAAAA-GACGGC--TCGAGG---GCTGAACTCAGCGAAACGGATTAGACTCACAGACGGAAACTAAGG----TACTGAacgttattttttctatttctatttcttcttttttcttcatctcgtATACGAATATGG-------------------------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold630  6133141 223 + 20921866 ATGATTGAAAGGC---AATGccaa-gaagaaatgag--------------agagaaatgt--tGGCGTCTTC-GGTTGAAAACGTGAAATAATCGCGAGAGACAGAGG-----------------GACAGAGCGTTTGAAAA-GACGGC--TTGAGA---GCTGAACTCGACGAAACGGATTAGACTC--AGAAGGAAACTAAGG----TACTGAACGTTTTTTccc-----------tctatttttctgacgACGTCGTATACGAATGTTGAATGC-------------AGAGtgt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2450683 227 +  4147112 ATAATTGAAGGGC---AATGCAGA-gatgaaaatga--------------gggaaaatgC--TGTCGTCTTC-GgttgaaaatgaggaataaTCGCGAGAGACAGAGG-----------------GACAGAGCGTTTGAAAACGACGAC--TCGA-A---GCTGAACTCAACGAAACGGATTAGACTC--AGACGGAAACTAAGG----TACTgaacgttttttgtt-----------tct---------tcatagTTATATATGGATGTTGAAAACACGGAAAACGCATATAGGGT
i caePb3.Scfld02_0      I 667 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=-3282.000000
s ce10.chrX             4190233 21 + 17718866 ----------------TGAGTGTCCTCGCCGGCT--CTC
s caeRem4.Crem_Contig0  1159061 36 -  4500979 GGAgagtcttttttttcaagagcCAACGTCGTGTGT---
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold630  6133364 29 + 20921866 ----cgctttttttcttctg-ggCGGTGTCGTTT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2450910 30 +  4147112 ----TGCCTCTCTTCTTGGGAGGTGAAGTCGTTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296719 48 + 21540570 I

a score=-22306.000000
s ce10.chrX             4190254 165 + 17718866 GTTACTAGGATA--CATGTAGTTTTAC----ATTATCTGCACA---------TCTTGTTT--------GTTTGCTTTTTGAAATGTGG-----ATTTGTATGTTGTATATTT------------TGTTGTTTTCCAA-----TGCAAGCTCTTT----------TGTTTCAGAAAGTTATACCGGT---TTTCAAAACTA--------------------------TCTAAAA------------ACTGGCTACATTCACA
s cb4.chrX              9296767 207 + 21540570 GTTACCAGGATATGCGTTCGTCttttt--tccgtttgagtgtttttccagcggattttatgggataaactttttcttttttttagagatgtatatttttccttcttttttttg-----------ttttctttgtgtt---gtttcgattttccttttcAGACTGTGTTCCGGAG-------Ccaat-----aaaagttttttcccACTTTCTTAAGAATCAT----accaaaa----------------------tccaca
i cb4.chrX              I 48 I 181
s caeRem4.Crem_Contig0  1159097 200 -  4500979 GTTACTAGGTTA--CATTCAGTTTCGTAGTGTGTCTGGGCACATTc------gtctttat--------ttttgtttttttcttggacA-----ATTTGTTATCTGTCACTTTGGGActtgcaatttttctttcttttacgATTGcaggtttttttctgaaacaatattttg-------------ct-----tcaaattttatatatttctaGTAACAAGCTTGTTCATGAATA----------------------TTcata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6133393 163 + 20921866 GTTACTAGGTTA--CATGCAGTTTCGT----CGTATATACaca-------------ttaa--------ttttcttttatgcGTTGTTA-----TTGTGTTTGAATTATCcttgaaataaata--ttatatttttcct----tctcaaatttcc------atctgtttattttatt------ccagt-aatcaaaaattca--------------------------tctaaaat---------------------ttcaca
i caeSp111.Scaffold630  C 0 I 52
s caePb3.Scfld02_0      2450940 210 +  4147112 GTTACTAGGTTA--CACGCAGTTCCGT----AGTGTGTGCacc---------aattttat--------tttcgttttttatgttatt------ctgtttttttttcattctt------------ttttcttttctta----tctcgtttttcct-----ggccatttcttttAGTCACAAACCACTGAATCTAAAAATCAATTGCTTACTGATAAtgatcag-tttttcagaatccattacTTGGAAATGATACGTTTATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=641.000000
s ce10.chrX             4190419 22 + 17718866 TTG--CCAATTTTTTAAAAAATAT-
s caeRem4.Crem_Contig0  1159297 19 -  4500979 -----ccaaatttcaaaaaaaaat-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2451150 25 +  4147112 TCAtatgaaatttcacaaaaaattt
i caePb3.Scfld02_0      C 0 I 85
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeSp111.Scaffold630  6133556 52 + 20921866 I

a score=52.000000
s ce10.chrX             4190441 8 + 17718866 TTCCAATA
s caeRem4.Crem_Contig0  1159316 8 -  4500979 ttggaacg
i caeRem4.Crem_Contig0  C 0 I 152
e caePb3.Scfld02_0      2451175 85 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeSp111.Scaffold630  6133556 52 + 20921866 I

a score=0.000000
s ce10.chrX             4190449 22 + 17718866 AAAGCTACTTCTTTACTCTGAC
e caePb3.Scfld02_0      2451175 85 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeSp111.Scaffold630  6133556 52 + 20921866 I
e caeRem4.Crem_Contig0  1159324 152 -  4500979 I

a score=-31.000000
s ce10.chrX             4190471 22 + 17718866 CTGACTTACTCTGACCCTGAAA
s caeSp111.Scaffold630  6133608 13 + 20921866 CTAATCTTCTCTG---------
i caeSp111.Scaffold630  I 52 C 0
e caePb3.Scfld02_0      2451175 85 +  4147112 I
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeRem4.Crem_Contig0  1159324 152 -  4500979 I

a score=-4622.000000
s ce10.chrX             4190493 85 + 17718866 CGAAAAAACGTTAGATCTAAATTTCTACTTTGATTATAAACTTATTGCCAAACACATCAGACACAGTTTTACTGAACGTATCTAT
s caeSp111.Scaffold630  6133621 63 + 20921866 ---------------TATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACACGATAGTG-------TGTGTTGAGGGTGTTTAT
i caeSp111.Scaffold630  C 0 I 69
s caePb3.Scfld02_0      2451260 65 +  4147112 CGGAAGAACGAGAAATGACATTGCGTCGTTTGCTTATATACCCGTTACTCAACAA------------------GCGGCTGACC--
i caePb3.Scfld02_0      I 85 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeRem4.Crem_Contig0  1159324 152 -  4500979 I

a score=-147.000000
s ce10.chrX             4190578 7 + 17718866 CAATGTA
s caePb3.Scfld02_0      2451325 4 +  4147112 ---TCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e cb4.chrX              9296974 181 + 21540570 I
e caeSp111.Scaffold630  6133684 69 + 20921866 I
e caeRem4.Crem_Contig0  1159324 152 -  4500979 I

a score=-2573.000000
s ce10.chrX             4190585 35 + 17718866 -------TCT------GCCACCTTCTATGCA----GATTATATTACCGAAAA
s cb4.chrX              9297155 38 + 21540570 -------tct------ctttctttctaCACACACAGCACACATCACAGAGG-
i cb4.chrX              I 181 C 0
s caePb3.Scfld02_0      2451329 31 +  4147112 GCTGCCATCTGcagtgtttttcttcttctcg---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeSp111.Scaffold630  6133684 69 + 20921866 I
e caeRem4.Crem_Contig0  1159324 152 -  4500979 I

a score=-3711.000000
s ce10.chrX             4190620 26 + 17718866 ---GACAAGTACTCTCACGCACCCTCCGT
s cb4.chrX              9297193 14 + 21540570 --CAGGCATCGCCCTT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1159476 13 -  4500979 ---GAGAGGCGACCTT-------------
i caeRem4.Crem_Contig0  I 152 C 0
s caePb3.Scfld02_0      2451360 16 +  4147112 tcaCACAACTGCGCGT-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeSp111.Scaffold630  6133684 69 + 20921866 I

a score=-7642.000000
s ce10.chrX             4190646 33 + 17718866 CTCTCAATCTCCTC--TTCTCT------------------TTTCGTCTCGACA---------------
s cb4.chrX              9297207 36 + 21540570 CGCTCACTCTTCTCTATCCTACG-----------------TTTCCTCTCGTCT---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1159489 52 -  4500979 GTGTGTCTCCCGTC-ATTCGACGGCGAAAGATTCGCATTTTTCTCTcgcgtct---------------
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  6133753 49 + 20921866 cactcattctcctt--tcccctt-----------------ctttctctctttcccctcGTCGGGCCTC
i caeSp111.Scaffold630  I 69 C 0
s caePb3.Scfld02_0      2451376 30 +  4147112 ------CTCTTTTC--TTAGCCT-----------------CTTTCTCCCCCTCC-------------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=-1549.000000
s ce10.chrX             4190679 30 + 17718866 -CAATACAACTGCCAACGAGCGG---CCCGAAAG
s cb4.chrX              9297243 20 + 21540570 TCTCTGC---------CAACTGA---CCTCGA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  6133802 24 + 20921866 -CAACAC-------AGCACACGATGGCCCAGA--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2451406 21 +  4147112 -CAATGC-------AACAAGCGA---CCTCGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I
e caeRem4.Crem_Contig0  1159541 38 -  4500979 I

a score=5953.000000
s ce10.chrX             4190709 10 + 17718866 GGCGAAAGAT
s cb4.chrX              9297263  8 + 21540570 --CAAAAGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1159579 10 -  4500979 GACAAAAGGT
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold630  6133826 10 + 20921866 GGCAAAAGAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2451427 10 +  4147112 GACGAAAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  107569 5264 -   375229 I

a score=1834937.000000
s ce10.chrX             4190719 2399 + 17718866  
s cb4.chrX              9297271 2313 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1159589 2387 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 143
s caeSp111.Scaffold630  6133836 2320 + 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2451437 2322 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  112833 2376 -   375229  
i caeJap4.Scaffold17084 I 5264 C 0

a score=546.000000
s ce10.chrX             4193118 1 + 17718866 A
s cb4.chrX              9299584 1 + 21540570 a
i cb4.chrX              C 0 I 421
s caePb3.Scfld02_0      2453759 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 398
s caeJap4.Scaffold17084  115209 1 -   375229 a
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  6136156 0 + 20921866 C
e caeRem4.Crem_Contig0  1161976 143 -  4500979 I

a score=702.000000
s ce10.chrX             4193119 21 + 17718866 ACGTTTTCAGATTTTATATTT
s caeSp111.Scaffold630  6136156 21 + 20921866 atatttttacatttcagaatt
i caeSp111.Scaffold630  C 0 I 69
s caeJap4.Scaffold17084  115210 13 -   375229 atgtttttgaatc--------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e cb4.chrX              9299585 421 + 21540570 I
e caeRem4.Crem_Contig0  1161976 143 -  4500979 I

a score=758.000000
s ce10.chrX             4193140 81 + 17718866 AATTCATGTCTTGGTGACTGAAAA-ATGAGGGTTCAA---AAATATAGATTTTCAGAGTT---------TTCA------AAATGTTTTTTTTTTCACTTT
s caeJap4.Scaffold17084  115223 94 -   375229 AATTCA----TTG--AACCGAGAATATCAACTTTTAAATTAAACACGAATTTTGGAAGCTACATACATATTTAaataagaaattttttttctttcaattt
i caeJap4.Scaffold17084 C 0 I 105
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e cb4.chrX              9299585 421 + 21540570 I
e caeSp111.Scaffold630  6136177 69 + 20921866 I
e caeRem4.Crem_Contig0  1161976 143 -  4500979 I

a score=0.000000
s ce10.chrX             4193221 778 + 17718866  
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e caeJap4.Scaffold17084  115317 105 -   375229 I
e cb4.chrX              9299585 421 + 21540570 I
e caeSp111.Scaffold630  6136177  69 + 20921866 I
e caeRem4.Crem_Contig0  1161976 143 -  4500979 I

a score=664.000000
s ce10.chrX             4193999 7 + 17718866 TGAAGGA
s caeRem4.Crem_Contig0  1162119 7 -  4500979 TGAagga
i caeRem4.Crem_Contig0  I 143 C 0
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e caeJap4.Scaffold17084  115317 105 -   375229 I
e cb4.chrX              9299585 421 + 21540570 I
e caeSp111.Scaffold630  6136177 69 + 20921866 I

a score=-87.000000
s ce10.chrX             4194006 13 + 17718866 --TTCATTTATAATA
s cb4.chrX              9300006 13 + 21540570 --ttcactgacgaaa
i cb4.chrX              I 421 C 0
s caeRem4.Crem_Contig0  1162126 15 -  4500979 attgaattttaaaac
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e caeJap4.Scaffold17084  115317 105 -   375229 I
e caeSp111.Scaffold630  6136177 69 + 20921866 I

a score=-3659.000000
s ce10.chrX             4194019 27 + 17718866 ATTACAAATTACAAA-----ATATACATGTGT-----------
s cb4.chrX              9300019 17 + 21540570 attaaaagttcataa------------------------at--
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1162141 38 -  4500979 attgaaaatttattaga---aaatAAGTGTGCAACcatcat--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  6136246 39 + 20921866 ATTACAGGTTGACAATACTTGAatatatatgaaaa----atat
i caeSp111.Scaffold630  I 69 I 1
e caePb3.Scfld02_0      2453760 398 +  4147112 I
e caeJap4.Scaffold17084  115317 105 -   375229 I

a score=95169.000000
s ce10.chrX             4194046 127 + 17718866 TAAAATTC-------AGACATCAATAACATTTGCTGGATCATTGTCTTCATAGTTGTTCCGCCTACTTGGAATGCCTTCCAAATCTTTCATCAGTGTCTCCATAACATCAGACGTCTGGAACACACATTCTTTA
s cb4.chrX              9300039 126 + 21540570 -aatattc-------acaCATCAATAACATTGGCGGGATCATTGTCTTCGTAGTTGTTCCGACGTGTCGGTATACCTTCCAAATCCTTCATAAGTGTCTCCATGACATCAGAAGTCTACAATTCGGAAGTATCG
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1162182 127 -  4500979 gaattatt-------aAACATCAATGACATTTGCTGGATCGTTGTCTTCGTAATTATTCCTCAAACTTGGAATACCTTCCAAGTCTTTCATCAATGTTTCCATAACAtcagatgtctgaaaatcaaatgttcAG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold630  6136286 120 + 20921866 gaaaattc-------aaacatCGATGACATTGGCAGGATCATTGTCTTCATAGTTATTGCGGCGACTCGGAATACCTTCCAGATCCTTCATCAAAGTCTCCATAACGTCAGATGtctgcaaaaaaca-------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0      2454158 131 +  4147112 TAAAATTCCCTTCTTAAACATCGATAACATTAGCCGGATCGTTATCTTCGTAGTTGTTCCGACGACTGGGGATGCCTTCTAAATCTTTCATCAGTGTCTCCATCACGTCAGAAGTCTGAATACAACACCTC---
i caePb3.Scfld02_0      I 398 C 0
s caeJap4.Scaffold17084  115422 127 -   375229 TAATCTTC-------AAACATCAATAACATTAGCAGGATCATTGTCATCATAATTATTACGGCGGCTTGGAATTCCTTCGAGATCTTTCATTAAAGTTTCCATGGCGTCAGATGTCTGAATGTAAAACTTTTTG
i caeJap4.Scaffold17084 I 105 I 21

a score=-9139.000000
s ce10.chrX             4194173 25 + 17718866 ATTTCCAACATCACAAATTGA------AATT--
s cb4.chrX              9300165 22 + 21540570 ATAATGA-TATTCAAAA----------TATTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1162309 25 -  4500979 A--------ATTCCAAACTCTCGGTTTCATTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6136406 30 + 20921866 --aataactATGCGAAGCTCACTGTT-TTCCTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454289 26 +  4147112 ATATTGAATATTCAAACCTAG-------TTTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  115549 21 -   375229 I

a score=71780.000000
s ce10.chrX             4194198  99 + 17718866 CTCACCGGCTCTACATTGATTGCCGGTAATCGACGGCTACTAACACTGCCATTTCTCCCATGTACTTGTGGTTGTTCAATCTGAAA-GTATCA--AAATATT
s cb4.chrX              9300187  91 + 21540570 CATACCGGTTCAACATTGATTGCTGGCAAGCGGCGGCTGCTGACACTACTGGTTCTTCCATGAATTTGAGGTTGTTCAATCttaaaacaac-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1162334  94 -  4500979 CTTACTGGTTCTACATTAATAGCAGGCAAACGACGGCTGCTAACACTACCGGTTCTTCCGTGAATTTGTGGTTgttcaatctgaaatataC--------ATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6136436  95 + 20921866 CTCACCGGTTCTACATTGATTGCCGGCAAACGTCGGCTGCTAACACTACCGGTTCTTCCGTGAATTTGTGGTTGTTCAATCTGTAA-CTATTA------ATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454315  93 +  4147112 CTCACCGGTTCTACATTGATTGCTGGCAGACGCCGACTACTAATACTACCGGTTCTTCCGTGAATTTGTGGTTGTTCGATCTGAAA-CTCT--------ATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  115570 102 -   375229 CCTACTGGATCAATGCTTATCGCAGGAAGTCGACGACTACTGGCGCTACCGTTTCTACCGTGAATTTGGGGTTGTTCAAtctgtaaaataaaataaaatatt
i caeJap4.Scaffold17084 I 21 I 732

a score=-7582.000000
s ce10.chrX             4194297 23 + 17718866 TTTGCATTTTT---------TTAATTTTAGGA
s cb4.chrX              9300278 27 + 21540570 -----atttttattagaaaaatatcTTTTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1162428 28 -  4500979 TGCTAATTTATGCTAAACAAATCTGTCT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6136531 23 + 20921866 TAGAAAGGTTT------CACGTATTTTGT---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454408 26 +  4147112 GCCTAGTCTTT------CAGGTACTTTATTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  115672 732 -   375229 I

a score=134839.000000
s ce10.chrX             4194320 254 + 17718866 AAAGCTTACATCCGGTTTTATAGTTTCCTTTGGGGGTTCACGCTTATCGAGAGTTTTTGTAACGTAACTCATTAAACGTTGCGCTGAAAAAGTACTGATAACAT--TTTCAATTTTGAT-----CTCCAACATACAGAAACGACGCTTGCTCAAAGTTGTTTGAGTTTCCGATTCCTCGTCGCTGTCATAATCGAAGTTTGGCGAACTTCTGACGATTGACCTTCGAGTTCTCTGAA--AACGCAACCATACTTTATT--------------------------------------------------------A-------------TGAA-----
s cb4.chrX              9300305 265 + 21540570 AGACCTTACAtccgttttcaaagtttccttTGTTGGTTCTCTCTTATCCAAAGTTTTAGTGACGTAGCTCATTAGGCGTTGAGCTAAAATTATACTGATAAGAT--TCGTGCTTTCTTTTGTGCTGGCAACTCACAGAAGCGTCTTTTACTCAGTGTTGTTTGCGTTTCCGACTCGTCGTCACTATCGTAGTCAAAATTAGGCGAACTTCTGACGATCGAACGACGAGTTCGCTGAA--AAA---ACGTTGTTTTGCT------------------------------------ACGTCA--------------ACCT----------CCAG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1162456 264 -  4500979 ----CTTACATCAGTTTTGATTGTTTCCTTTGTGGTTTCCCGTTTATCGAGAGTTTTAGTGACGTAGCTCATCAAACGTTGCGCTAAAATTGTATTGATAAAATCATCATTCATTTGCATGCAATTCCAACTCACAGAAACGTCGTTTGCTCAACGTGGTTTGAGTTTCCGACTCGTCATCACTATC---ATCAAAGTTGGGCGAGCTTCTGATTATAGACCGACGGGTTCTCTAAAATATA---tagttgtttttcttcta-------------------------------GATGCCA--------------A-------------CGGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6136554 257 + 20921866 -----ATACATCAGTTTTGATATTCTCCTTTGTGGGCTCTCTTTTGTCGAGAGTTTTGGTGACGTAGCTCATCAAACGTTGCGCTGAAACATAACTGATAAAGT--GGAC-CGATTGTA-GTGCTGGCAACTAACAGAAACGCCTTTTGCTTAATGTTGTTTGAGTTTCCGACTCGTCGTCACTGTCG---TCGAAGTTAGGCGAGCTTCTGACTATCGAACGACGGgttctctgaa--aac---------ttttgcTCTCA-------------------------------TTATTCT--------------GTTTA-------CGTGAT-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454434 286 +  4147112 A---CTTACATCAGTCTTGATTGTATCTTTTGCAGGTTCTCGTTTGTCAAGCGTTTTTGTGACGTAGCTCATCAACCGTTGCGCTAAACATTCACTGATAAAGT--TTTTACGTGTATA-ACAATGCCAACTAACAGAAACGTCGTTTGCTCAAAGTTGTTTGAGTTTCCGACTCCTCATCACTATCGTAATCAAAGTTGGGTGAGCTTCTGACAATTGAACGACgagttctctgaa--aatttcatgttgtttttctttca-------------------------------ctcGCCTACGTAGAAATATCAGCCTA-------CGTGAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  116404 310 -   375229 AAAACTAACGTCAATTTTTGCGTTCTCCTTTGTTGGTTCCCGTTTGTCAAGAGTTTTTGTAACGTAGCTCATCAAACGTTGTGCTGCAAAAATGTT-CTATAAC--GGCTACCATCCCA-GCGATAA-AACTAACAGAAACGTCTTTTGCTCAATGTTTCTTGTGTCTCCGATTCGTCCTCACTGTCCGTATCAAAGTTTGGCGAGCTTCTGACAATAGAGCGACGGGTTCTCTGGA--AAT------TTATTTTGCATTTggaagaaaacatttaaatcTGGACGGGAGGCTTATGTTA--------------GCTCAATCAGATTGTGATATAAA
i caeJap4.Scaffold17084 I 732 I 173

a score=171753.000000
s ce10.chrX             4194574 207 + 17718866 -AAAA-AAAAACGCTC-------------------------------------------ACCTGATCGAATGTAGAATTTCTTCGTTGTTCGTGGAATGTGCACCATATTTTCAGAAGGCATAAAATGAGACCAGTCGTTAGTGATGCGAAAAAAATGAGTATGACGAGAAACACGACGAGGCCATAAATGGAATGGTCCGTAGTGTCAACAAGTTCAGTGGTCGTCTCCATCTGCAA-----------------ATTGAAAATGCAAA
s cb4.chrX              9300570 197 + 21540570 -ACAA-AAA---GTTC-------------------------------------------ACCTGGTCAAACGTAGAATTACGTCGTTGTTCGTGGAATGTACACCATATTTTGAGCAAACACAGAATGAGCCCGGTAGTTAGTGATgcgaagaaaatgagaatcaCAAGGAAGACTACAAGACCGTATATAGAGTGATCCGTGGTGTCAGCGAGTTCAGTAGTCgtttccatct------------------------gaaaaatcaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1162720 212 -  4500979 -ATAACAAA---GTTC-------------------------------------------ACCTGGTCGAAAGTAGAGTTGCGTCGTTGTTCGTGGAATGTACACCATATTTTGAGCAGACATAAAATGAGTCCAGTAGTGAGTGAGgcgaagaaaataagaatgacGAGGAACACGACAAGACCATAGATGGAGTGGTCAGTGGTGTCAACTAACTCAGTAGTCGTTTCCATCTGGAATCAAA----------GTATCGAAATATCAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6136811 195 + 20921866 -ACCA-GAA---GTTC-------------------------------------------ACCTGGTCGAACGTCGAGTTACGTCTTTGTTCATGGAATGTACACCATATTTTGAGCAGACATAGAATGAGTCCAGTAGTTAGTGatgcaaagaaaatgagaatgacaAGAAACACGACTAGACCATATATGGAGTGGTCTGTGGTGTCGGCAAGTTCAGTAGTCGTTTCCATCTGGAATCAAA--------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454720 221 +  4147112 -GTCA-GAA---GTTC-------------------------------------------ACCTGGTCAAAAGTCGAGTTACGTCGTTGTTCGTGGAATGTACACCATATTTTGAGCAAACATAGAATGAGTCCTGTAGTTAGTGATGCAAAGAAAATGAGTATGACGAGAAACACGACGAGACCATATATGGAGTGGTCGGTGGTGTCAACAAGTTCAGTAGTCGTTTCCATCTGAAATGAGAAACGGaatggaaatcaaaaactcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  116887 245 -   375229 aaaaa-aaa---acttagaaAAGAGGCAATAACAACCCTTCACGAAATAAAGAAAACGGACCTGATCGAAAGTGGAATTTCGACGTTGTTCATGAAATGAGCACCATATTTTGAGCAAGCACAAGATGAGCCCGGTGGTCAGTGATGCAAAGAAAATGAGAATAACAAGGAAAACAACAAGGCCATAAATCGAGTGATCGGTTCTGTCGACAAGCTCAGTGGTGGTTTCCatctggaa--------------------gaaaaaggaaa
i caeJap4.Scaffold17084 I 173 I 309

a score=-20954.000000
s ce10.chrX             4194781 159 + 17718866 CA---------CTTTTTAGCAGTG---------------------CCACTTGTTTACA----------GGA-----AAT----CTTTCA-----AAATCTTGAGAAATGTCCGGAAA----TTCAAATGAGATGGGATAAAAGTTATGATCGAACCATTAGC-TGACAAGGAAGTTATCAA---AAAAATGTCACTTGTGGGATTAA-AAACTAC----TCATAAA----------------
s cb4.chrX              9300767 157 + 21540570 aa-aaaacatgatttcTAAAGATC---------------------TGATTTGTTGACCAGATTC----GAATTCT-AATGTTAATCTCAACAG-AA------------TCTAGAGAA---------ACCACAGAGCTTTTAGATTA-------------ATT-TAATGAGGAAGTTGTAGGAA-TGAGATGCAGTTTTTAAGATTAA-AACCTAA----GCAGAAA----------------
i cb4.chrX              C 0 I 946
s caeRem4.Crem_Contig0  1162932 174 -  4500979 AATGAAAAAGGGATTCTTGAAGTG---------------------TGGTTT--------GATGC----GCATTCTGAATGTTTATCTCACCGG-AAATCTTAAAGTAGTTTGAACAAGAAATTGGTGCAACGGAGCACTAAGAGTA-------------ATC-TGATGAGgaagttttcaatt-aaaaatatgatCTCTAGGATTAT-AATTTTA--TGTTATGAA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6137006 169 + 20921866 ---------------------------------------------TAATCAGTTTATCAGATACTAGGGGG-----AAATAGTTTCTTTCCGGCCAAGCTTCAAA---TGTgtgata----tttgaa--aaagagtatTCAAACTA-------------ATCTTTATGAggaaatttggaatt-gagTGTGTGATCTATAGGATTATGATTTTTATGTGTTATGAAGTTGGAAGAAATATGA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2454941 179 +  4147112 ---gacCCTGTGATTCTTGAGATGTGTTGCAAGAGTGATGTTCACTACTAAGCTTATCTGATCC----GGA-----AATGGGAATCTTT-----AAAACTACAAA---TCTAGAAGA----TCTGCAGCAAGTAGCACTCAAAGTA-------------ATC-GGATAAGGAAGTTATGAATCAAAATATGTGATCTATAGGATTACGAATTCCA-------------------------GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  117132 309 -   375229 I

a score=-2448.000000
s ce10.chrX             4194940 11 + 17718866 G----TTTATTATCA-----
s caeRem4.Crem_Contig0  1163106 11 -  4500979 ---------TGGTTTGGTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6137175 15 + 20921866 GATATTATatgatca-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2455120 11 +  4147112 G----CCTATTGtca-----
i caePb3.Scfld02_0      C 0 I 497
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I

a score=-6451.000000
s ce10.chrX             4194951 175 + 17718866 ACAAGAATTAATCTTTCAAA-AGTGGTCTC----AAAGATAAAAACACAATAGTTTAAAAGTAGTTTAGAGTGCGGTTTAATGTGAGTTTGAAAAAAAAACAGACTTATTCTGA--CGCAAGTCTC-----TTTCCAATT---AGAGAAAAAACGTGCTCAAACTATTC-------TTGACACTATGT---CAAAA-CGGA-------
s caeRem4.Crem_Contig0  1163117 168 -  4500979 AGATGAATGGGtagattgaa-----------gaaaaagatgaaaaaataaatgttcc------GCTAGGAAAAC-----------------ACAGATTAACTGATTGATCATCAACAACAAGGTACAAttgtttgttattttttattagagTAGCTTTTCAGGCTACTC------AACAAACTTGTGTGTGCAAAatatgaaatcgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6137190 141 + 20921866 -aatgaaaaatgaaatggaacagcgttcattgataaaaatgaaaacaaaaaaatttc------------------------------------------attcattcatttcagacTGCAAGATGT-----TTTGttgtt--------gatcactttttcagCCAATTCACTATGAATGAAATTCTGT---CAAAA-AGGA-------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0      2455131 497 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I

a score=2466.000000
s ce10.chrX             4195126 20 + 17718866 TAGAAATGACACTAGACCAT
s caeRem4.Crem_Contig0  1163285 20 -  4500979 aaaagacaTGGCTGGatctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6137331 14 + 20921866 ------TGTTACTAAAGCCT
i caeSp111.Scaffold630  C 0 I 8
s caePb3.Scfld02_0      2455628 20 +  4147112 TGAAGATGATACTAGACCCT
i caePb3.Scfld02_0      I 497 I 15
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I

a score=-437.000000
s ce10.chrX             4195146 6 + 17718866 --AGCGAA
s caeRem4.Crem_Contig0  1163305 8 -  4500979 tttccaaa
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold630  6137353 7 + 20921866 -ATTCAGA
i caeSp111.Scaffold630  I 8 C 0
e caePb3.Scfld02_0      2455648 15 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I

a score=16018.000000
s ce10.chrX             4195152 52 + 17718866 CTGACTCATTTCAATGTACTACATGATCTTTCTCACAGAATATTTTATGAAC---
s caeRem4.Crem_Contig0  1163319 55 -  4500979 CTGACTCATTTAAATGGAGTACATGATCTTCTGCACAGAATAATATATAAGGTAC
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold630  6137360 52 + 20921866 CTGACTCACATAAATGAAGTACATGATCTTCTGAGcagaatattttattaat---
i caeSp111.Scaffold630  C 0 I 60
s caePb3.Scfld02_0      2455663 52 +  4147112 CTGACTCATTTCATTGAAGTACATGCTTTTTTGCACAGAATATTATACAAGT---
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I

a score=1452.000000
s ce10.chrX             4195204 27 + 17718866 ---------------TTCAGAATCCCTTCTGATGTTTGATTA
s caeRem4.Crem_Contig0  1163374 34 -  4500979 -------TACATGGTCTTTGAATCCA-GAAGATATTTGATTA
i caeRem4.Crem_Contig0  C 0 I 358
s caePb3.Scfld02_0      2455715 40 +  4147112 TCAGGGATAAATGGTCTTTGAGACT--GATGATGTTTGATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I
e caeSp111.Scaffold630  6137412 60 + 20921866 I

a score=122.000000
s ce10.chrX             4195231 19 + 17718866 GAAT-ATTGAAATGAAACTT
s caePb3.Scfld02_0      2455755 20 +  4147112 GGCTCACTGCAAAAAATCTT
i caePb3.Scfld02_0      C 0 I 352
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I
e caeSp111.Scaffold630  6137412 60 + 20921866 I
e caeRem4.Crem_Contig0  1163408 358 -  4500979 I

a score=0.000000
s ce10.chrX             4195250 6 + 17718866 GTGGGA
e caePb3.Scfld02_0      2455775 352 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I
e caeSp111.Scaffold630  6137412 60 + 20921866 I
e caeRem4.Crem_Contig0  1163408 358 -  4500979 I

a score=1652.000000
s ce10.chrX             4195256 106 + 17718866 GTTGGCGCACAAGTTTTAGAATTTTTTGAAG--------GGCAAAAATCGGGA----GAAAGATTCAGTTGaaatttaaaaaataaataaattGAAAGTTGTAAAATTAGTATTTTCT
s caeSp111.Scaffold630  6137472 109 + 20921866 GTTGacgtat---tttttgaattttttgaaatacaatACGAAAAACAACGGGAATCTAGAAGAT----TTGGAAGtgtatgaagaaaaaaatgaaaa--tgcgaaatcaaaagttctt
i caeSp111.Scaffold630  I 60 I 216
e caePb3.Scfld02_0      2455775 352 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I
e caeRem4.Crem_Contig0  1163408 358 -  4500979 I

a score=0.000000
s ce10.chrX             4195362 895 + 17718866  
e caePb3.Scfld02_0      2455775 352 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e cb4.chrX              9300924 946 + 21540570 I
e caeSp111.Scaffold630  6137581 216 + 20921866 I
e caeRem4.Crem_Contig0  1163408 358 -  4500979 I

a score=688.000000
s ce10.chrX             4196257 127 + 17718866 AATTTTCGAGTTGTTGTATATAAGTTTTAAAAAAAAATTCCAAATTTCACTTATAATACGCTAGTTTAAA---AGTTTCCCCTGG----TTTGAAAAAAAAAATAGTAGTCTTGCCTAATCTTGTTTTGAGCAT
s cb4.chrX              9301870 100 + 21540570 agttttcgaat------------gttttgaaaacactTTCAAAGCATCACATGTGATAAACAAGTTCGGATAGAATTTCCAATGAGGAATTCGAAAACAATGATAA--------------CTTG--------AA
i cb4.chrX              I 946 C 0
e caePb3.Scfld02_0      2455775 352 +  4147112 I
e caeJap4.Scaffold17084  117132 309 -   375229 I
e caeSp111.Scaffold630  6137581 216 + 20921866 I
e caeRem4.Crem_Contig0  1163408 358 -  4500979 I

a score=910.000000
s ce10.chrX             4196384 1 + 17718866 A
s cb4.chrX              9301970 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1163766 1 -  4500979 A
i caeRem4.Crem_Contig0  I 358 C 0
s caePb3.Scfld02_0      2456127 1 +  4147112 A
i caePb3.Scfld02_0      I 352 C 0
s caeJap4.Scaffold17084  117441 1 -   375229 A
i caeJap4.Scaffold17084 I 309 C 0
e caeSp111.Scaffold630  6137581 216 + 20921866 I

a score=217578.000000
s ce10.chrX             4196385 485 + 17718866  
s cb4.chrX              9301971 525 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1163767 476 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  6137797 466 + 20921866  
i caeSp111.Scaffold630  I 216 C 0
s caePb3.Scfld02_0      2456128 479 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  117442 432 -   375229  
i caeJap4.Scaffold17084 C 0 I 29570

a score=9897.000000
s ce10.chrX             4196870 39 + 17718866 AAATGACATCGCCCGAGCCAAT-TGGAT---ATGCTTTTGACA
s cb4.chrX              9302496 37 + 21540570 AAAATTCATCGC------ACACACAGGCTGTATGCATCTGACA
i cb4.chrX              C 0 I 16428
s caeRem4.Crem_Contig0  1164243 33 -  4500979 agatgtcATCAC------AGAC-CGGAC---ATGTATTTGACA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  6138263 33 + 20921866 ATATGTCATCAC------AGAC-CGAAT---GTGGATTTGACA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2456607 35 +  4147112 agatgtCATCAC----ATATAC-CGGAT---GTGTATTTGACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  117874 29570 -   375229 I

a score=-2133.000000
s ce10.chrX             4196909 10 + 17718866 ---CAACCCAAAA
s caeRem4.Crem_Contig0  1164279 10 -  4500979 ---TATCCCAAAA
i caeRem4.Crem_Contig0  I 3 I 125
s caeSp111.Scaffold630  6138296  3 + 20921866 GAG----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0      2456642 12 +  4147112 GGATCTCCAAAA-
i caePb3.Scfld02_0      C 0 I 72
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I

a score=854.000000
s ce10.chrX             4196919 56 + 17718866 TCACCGTGACTCCATTTTTGGCAATGAGCTTTCTGAAAATAACTATTTTTAAAAGA
s caeSp111.Scaffold630  6138299 38 + 20921866 -----------------TTGTCAATGTTCATCCTGCACA-AACCATTTTTGGAaga
i caeSp111.Scaffold630  C 0 N 0
e caePb3.Scfld02_0      2456654 72 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I
e caeRem4.Crem_Contig0  1164289 125 -  4500979 I

a score=0.000000
s ce10.chrX             4196975 558 + 17718866  
e caePb3.Scfld02_0      2456654  72 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I
e caeRem4.Crem_Contig0  1164289 125 -  4500979 I

a score=566.000000
s ce10.chrX             4197533 50 + 17718866 ACCTTTAAAATACAAT--AATTGAAAAAAAATTGTAGAAAACCTAGAGAAAA
s caePb3.Scfld02_0      2456726 36 +  4147112 atcttgaaaaaagaatccaactgaaataaaattgtg----------------
i caePb3.Scfld02_0      I 72 C 0
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I
e caeRem4.Crem_Contig0  1164289 125 -  4500979 I

a score=15331.000000
s ce10.chrX             4197583 107 + 17718866 CCAAAAAAAATTCCCGGTTGCTCCTTGAATAAACTGA-------------TGCAAGAGAATAAAGATTGCGTGACGCCAGACAAAT-CTAGAAATCTCATTAACGCAC-ATTTTAAGTGAAC
s caeRem4.Crem_Contig0  1164414 118 -  4500979 CTGAAGAGATTTTCGGTTTGCTGACTGAATTAGCAGA----TTTTTTCGGTTGATGGGGATAGAGATTGCGTGACGCGAGACGAATGCTTGAAATCTCATTAGCGCACAATTTTAagagaac
i caeRem4.Crem_Contig0  I 125 I 17659
s caePb3.Scfld02_0      2456762 118 +  4147112 ---aaaagaTTTTCGGTTCGCTCGTTGAATTagcaagatttttttcttggttgaTGGGGATAGGGATCGCGTGACGCCAATCTAGTGCTTGAAATCTCATTAGCGCGC-ATTTTAAGAGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I

a score=887.000000
s ce10.chrX             4197690 100 + 17718866 -CCGTGGTCAAGATTTGT--TTCGAATAATAAAAGATTTCTGGAAAAA----CGCGGTGAAATGAATTTGAGAAACAACAGAGAGGCATATTGAAAAAGTGCAATAG
s caePb3.Scfld02_0      2456880 105 +  4147112 GTTCCTGTCAAGATGTGGAATTGGAAAAGCACAATTGTTCTACGAAAAGAAGCAAGATAGGGTAAACTGAATAAACA--AATGAATTCTACTAGAAAAGCGAGATAG
i caePb3.Scfld02_0      C 0 I 13283
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I
e caeRem4.Crem_Contig0  1164532 17659 -  4500979 I

a score=0.000000
s ce10.chrX             4197790 8150 + 17718866  
e caePb3.Scfld02_0      2456985 13283 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9302533 16428 + 21540570 I
e caeRem4.Crem_Contig0  1164532 17659 -  4500979 I

a score=2407.000000
s ce10.chrX             4205940 49 + 17718866 TACACACAAAAAACGGCATTTTGAGCAAAAAGAGGACTACTTTTTAAGA
s cb4.chrX              9318961 49 + 21540570 TATAGACAAAATATATGATTTTGAGTGAAAAGCGAATTACTTTGTAAGA
i cb4.chrX              I 16428 I 2698
e caePb3.Scfld02_0      2456985 13283 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e caeRem4.Crem_Contig0  1164532 17659 -  4500979 I

a score=0.000000
s ce10.chrX             4205989 4532 + 17718866  
e caePb3.Scfld02_0      2456985 13283 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9319010 2698 + 21540570 I
e caeRem4.Crem_Contig0  1164532 17659 -  4500979 I

a score=473.000000
s ce10.chrX             4210521 5 + 17718866 TGTGA
s caeRem4.Crem_Contig0  1182191 5 -  4500979 TGTga
i caeRem4.Crem_Contig0  I 17659 C 0
e caePb3.Scfld02_0      2456985 13283 +  4147112 I
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9319010 2698 + 21540570 I

a score=-26.000000
s ce10.chrX             4210526 13 + 17718866 TGTTAAAAGAATC--
s caeRem4.Crem_Contig0  1182196 13 -  4500979 --tctgaaatgtttt
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      2470268 13 +  4147112 tgttcaaaaaatc--
i caePb3.Scfld02_0      I 13283 C 0
e caeJap4.Scaffold17084  117874 29570 -   375229 I
e cb4.chrX              9319010 2698 + 21540570 I

a score=-3825.000000
s ce10.chrX             4210539 169 + 17718866 AATAAGAAAT--TTCGAACGCC-ATTCTTT-TTATTATATTGGTACATTTTGG---------GACGGATAAATACAATTTTAGTTTTATTAAAACAAAAGTCAAGAG-GACAGAGATTCCGGTGAGAAGGGAAG-TGTCACAAAATAAATGTGG----TAAAAATGTTCAGCGAACAAAATTAT-------TTTT
s cb4.chrX              9321708 160 + 21540570 GAGACAAGAT---TCGCACgccaattttttattgata--cAAATACATCGGGAGTGGGGTCTGAATACAAAAGA------ATACATTCTTGAAAACGTAGTGTCCAGAAATGAAGATccc-----------aaaatattcagaaatacaT------------GACATTCGGCGAACGAAAAAGCATATGAATAG-
i cb4.chrX              I 2698 C 0
s caeRem4.Crem_Contig0  1182214 168 -  4500979 GTAAAGAAATTTATCGAGCgcc-attttttattattagttTGATATATCCGGGA--------GAATATAAAATACAATTCGGAAATTATTACAAACTTGGTGTGTAG-AATAAtgatttcaatt------gaaactttACAGAAATTGATCAAA----GGAAGGAATTAGGCGAACGAAAAAGT-------TAGT
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2470281 161 +  4147112 ----taaaac--atCGAACGCC-AATTTTTAT-----------TACATCCAAAGAAAG----TGAGATTAATTACATTTGGGAATTGTTCACAAACGCAGTGTTTGT-GATAAAAACCCCGATTAAAAGGGAAGTCGttaaaaacgacaaaaaatattagtaGACATGAGGCGAACGAAATGAT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  117874 29570 -   375229 I

a score=13311.000000
s ce10.chrX             4210708 359 + 17718866 AAAAAATTGCAATGACTTTGCAAAAAGAGAAAAAAAAAGAAAAAAGAACC--GACAGTAAAAAGCATGGAGGCAGACAGT---TTTGAAACAACTGCACAGCGAAGATTTTCAAAATAG-----GGACCAACGGTTGTACTCGTGGGGGAAGAGAACTAAGAAAAGGA-AGAGGC--------TTTTTGTA-------------------GAAAAAAACA---GGAAAC---------AAAAAAGTGT---TTCTTCAAAAATTC----------GTATTAAAATC---CACGGGGACTTGAGAATGGTTGATGAAGAACAT--TTGAACGTAAGGGGGGAAAAAGAGT-----------------------GAAGCGGACAAATTACCAA-----------------TTTTTTTTGGCTTTT--GAGTATTTCACTTTTTTTTGGTATT-TTTTAGCGAATTTTTTTTC
s cb4.chrX              9321868 356 + 21540570 --AATATTGCAATGACTTTGCGAGAAAC-------------AGTTATACCGagacagagaaa------aaagcagaacat--ttgtaaacggaccgcaggaagagaaaaaagaaaaggaaacatAGACCAACGGTTGTACTCGTGGGAAGAGAGaactaaaaaattt--gggggggagggggATTGCGACAAAAGTATGT----------GATAGAGACATGTGAAGTT---------AAGGAAATTT---------GACTGGTT----------GGGAAACATTC---CACGGGGACA---GAA------ATGAAGCATTT------gagaagacagaaaaaaagagt-----------------------gaagCTGACAAATGACCAAttatgaa--ttttcggatttttttggactttt--gaatattccacttttttttgggatt-tt-----gtattatttCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1182382 327 -  4500979 --AACATTGCAATAACTTTGCAGAAAAC-------------AGTTATACC--GACAGAAATA------GGAGCAGACAGT-GTCAGAATAGGACTGTAGAATGA--------------------AAACCAACGGTTGTACTCGTGGAAAAGAGACActaagaaaatt--gaagtt--------ttgcGACAGACAGTTGTACg--gacaaaataaaaaaa---gaagttttttctttgaaaaaaatgt---------gaacaacTCACAAGTCACTGGGAACGTTA---AAAGGAG------GGG------ATAAAGAGTTT-------------CAAGCAATTACAGT-----------------------GCAGCAAACaaatgaccaa---------------aatttttttgtgctttt--ggttatt-cactttttttgggtgtt-tt-----gaatttttgtca
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2470442 301 +  4147112 ------TTGCAATAACTTTGCAgtgaac----------agaagaaaaacc--gATAGAGCAA--------AGCAGACAAT------CAAATGACTGTAAAAACAGAGG----------------GAACCAACGGTTGTACTCGTGTGGGAAGAGAACTAAAGAA-----GGAATT--------TTGCagtg-------------------gagaaaaaaa---gcagtt----tgttgaaaaaaa-------------aacaaaa----------aaaaaagattc---cacGGGGAAATTTGTA------ATCAAGTAAAA---CGGGATAGGACAGTAA---AGAGT-----------------------GAAGCTGACAAATGACCAA--------------ATAtttttatgggctttt--gagtatttcactttttttggtttttgtt-----gggtttttttgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  147444 370 -   375229 aaaaaattgcaa-------gaaaaaaaa-------------aga--------gacagAAAAA------GTTGTTAACATTAAACTTAAAAGGTTTCAAGAGAGGAA------------------GAACCAACGGTTGTACTCGTGGAG--AGAGAACTaagaaaaggatggaagg--------atggaaggaaaagaaattagttattccattaaaaaga---agagaa---------aaaaaaacatgattcgTCTgatcaaga----------gagaaaaaatcagtcatcgggaca---aaa------attgagaaaaaaaaagaaagagaaagggaaagaaaaatatttagaaaaaaaacaacgaataaaaataaaaaagtgacaaaaaaggaaaGCAGACCttgttttttggattttttcaagtattcctcttttttttgggttt-tt-----cgcttttcttc-
i caeJap4.Scaffold17084 I 29570 I 28

a score=-7243.000000
s ce10.chrX             4211067 61 + 17718866 GTGTGAA--------ATATGACAGTAAACAACACCAACTAAGGAGCAACGAATTTTAGTGGGGCGGGGA
s cb4.chrX              9322224 31 + 21540570 AGggggaaatttttgattctaaagTTGATCA--------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1182709 28 -  4500979 atAGGGA------CGAGGCGAcagttgaaaacaa-----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2470743 22 +  4147112 aaacaga------------cATGCTTAAAAACAG-----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  147814 28 -   375229 I

a score=75163.000000
s ce10.chrX             4211128 832 + 17718866  
s cb4.chrX              9322255 731 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1182737 688 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2470765 691 +  4147112  
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17084  147842 697 -   375229  
i caeJap4.Scaffold17084 I 28 C 0

a score=-9124.000000
s ce10.chrX             4211960 18 + 17718866 CCGAAAATGAATG-----TCA----------------------------AC
s cb4.chrX              9322986 28 + 21540570 TC---AACCAATGGTCCTTCA------------CCCTCTAG--------TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1183425 51 -  4500979 GCTGGAATGAATGGGAAGTTAAGGTCAGTAAATTCAACTAGATAGTTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  148539 17 -   375229 --TTAAAACATTTGTCCAC--------------------------------
i caeJap4.Scaffold17084 C 0 I 12
e caePb3.Scfld02_0      2471456 17 +  4147112 I

a score=51919.000000
s ce10.chrX             4211978 220 + 17718866 CTTACCCTGCACCATTGCTATCTTCATCGCTGGATAATGTGATGACCGACGGAGCTGGGGAGTTCTTCTTA---GGTTGTGCCGCC------AGCGGCTTCACTTT---GACATTTCCGTTTATCATTGATTGTGCTCGTTGAGCTT---GTTGCTGTTGT--------------TGTTGT----------------------------GCAG--CTGTGCCGAGTGCCCAACTAGAATTTTCTTCAGGAAATGGAATGTTTGGTGCGTTTCCGTTGAA
s cb4.chrX              9323014 253 + 21540570 CTCACCTTGGACCATTGCTATCCTCATCGCTGGACAGGGTGATGACAGAAATCGCCGGTGagtctttcttctcttcttgtGATCCTGATTCAGCTGGTTTTGGCTT---TGGAGCTGTATTGATGACTGGTTGAATGCGAGG---TT---GTTGGTTTTGTGCTGCTGGTAGA--TTTTGTTGCAATA------AATTTGGC---TGAAGCAGATTTTGTCCTAATCCCCAGCTGGAGTTATCGTCAGGGAACGGGATTGTAGG------CGGATTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1183476 223 -  4500979 CTCACCTTGGACCATTGCTATCTTCGTCACTCGACAACGTTATCACTGACGGAGCAGGGGAGTTCTTTTTCTGCTGTTGTGACACT------ATTGGTTTCGGTCt---gttgtttccgttgatcatcgattgtgcccgttg---tt---gttgctgttgt--------------tgttgttgt-------------------------gcag--ttgttCCTAATCCCCAACTAGAGTTCTCTTCAGGAAACGGGATTGGTGGTTGATTCGCATTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2471473 262 +  4147112 CTTACGAAGGGCCGTTGCTATCTTCGTCGCTTGACAAAGTGATAACTGATGGTGCAGGTGAGTTTTTCTTA----GCTGGGACCGGG-----AGTGGCTTTGGCTT---GACATTTGCATTCATCATTGACTGAGAACgttg---ttgcagttgctgttgt--tgatgattgaactgttgcggctgtggtggctgttgtggctgttgCTGCAAAGCTGCTCCCAGGTTCCAACTGGAATTCTCGTCAGGGAATGGAACTGCTGGTGGATTTCCATTGAA
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17084  148568 217 -   375229 CCTACCCGGCGCCATTACTGTCCTCGTCACTGGATAGCGTGATAACAGAAGGGGCTGGAGAGTTCTTCTTA-ACCACCGGAACAATC-----GGTGGCTTTGCTTTCGCTGCATTTCCATTTATCATCGACTGCGCTCTCTG--------ATTG----TGT--------------TGTTGT----------------------------GCAG--CCATTGCCAATGCCCATGCCGTATTGTCATCTCCGAATTGAACATTGGCTTGATTCCCGTTTAA
i caeJap4.Scaffold17084 I 12 I 15

a score=2073.000000
s ce10.chrX             4212198 30 + 17718866 TGCGGTAGTTGCACTTGGGATGGAAGACGA
s cb4.chrX              9323267 24 + 21540570 CGCAGT------GTTCGGCATGGGTTGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1183699 24 -  4500979 TGCGGT------GTTTGGAATCGATGACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2471735 24 +  4147112 CGTAGT------ATTCGGAATATTGGATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  148785 15 -   375229 I

a score=489380.000000
s ce10.chrX             4212228 1034 + 17718866  
s cb4.chrX              9323291 1038 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1183723 1057 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2471759 1050 +  4147112  
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17084  148800 1055 -   375229  
i caeJap4.Scaffold17084 I 15 C 0

a score=-846.000000
s ce10.chrX             4213262 37 + 17718866 ATTACTGATATTATCAATGCTTTCATTCATATTA-ATT
s cb4.chrX              9324329 34 + 21540570 ---GCTGTTCCTGCTAAAACGTCCCTCAAGACCA-ATT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  149855 33 -   375229 -----aaagaaaaataaggcGTTCGTTCAAAGGACATT
i caeJap4.Scaffold17084 C 0 I 3
e caePb3.Scfld02_0      2472809 34 +  4147112 I
e caeRem4.Crem_Contig0  1184780  0 -  4500979 C

a score=92582.000000
s ce10.chrX             4213299 143 + 17718866 TATACCTAATCTGATCATATTCAGAACTTCCCGGATAGAGTGGCCATCCCAAGAATAGTTCAGCAATCACACATCCTAAGGACCACATGTCGATCGATTCGTTGAACGGCAAGCCAAGGATTATTTCGGGGGCTCTGCAATAA
s cb4.chrX              9324363 143 + 21540570 ATTACCTAATCTGATCATACTCCGAACTTCCCGGGTATAATGGCCAGCCGAGGAAGAGTTCAGCGATCACGCAACCCAATGACCACATGTCAATTGACTCGTTGAATGGAAGACCGAGGATGATTTCGGGCGCGCTGAAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1184780 135 -  4500979 --------ATTTGATCATATTCAGAGCTTCCTGGGTACAATGGCCATCCGAGGAAAAGCTCAGCAATCACACATCCCAATGACCACATGTCGATCGACTCGTTGAAGGGTAATCCGAGGATGATTTCAGGAGCCCTGAAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2472843 143 +  4147112 TATACCTGATTTGATCATATTCAGAACTTCCTGGGTACAGAGGCCATCCGAGGAAGAGTTCTGCGATCACACATCCCAAAGACCACATGTCAATAGATTCGTTGAACGGAAGGCCGAGGATGATTTCGGGAGCTCTGAAAAGA
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17084  149891 143 -   375229 TTTACCTGATTTGATCATATTCGGAGCTTCCCGGATACAATGGCCAGCCTAAGAAAAGTTCAGCAATGACGCAACCCAAAGACCACATGTCGATGGATTCATTGAAAGGCAGCCCGAGGATGATTTCCGGAGCTCTGAAATTA
i caeJap4.Scaffold17084 I 3 I 40

a score=-7476.000000
s ce10.chrX             4213442 35 + 17718866 TACGC--TTTAGTGTCA------AATTTC--AAAAATAAATTAAT
s cb4.chrX              9324506 34 + 21540570 CC-----ATTTTTCTGG------TTGTACATAAAAGAAAACTAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1184915 34 -  4500979 AATAGAGGTGTGTTTTG------ATCTGC-----AACATTTTTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2472986 32 +  4147112 TTCAT--GTTTTACTCGTCTGTTTTCTGT-----------TTAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  150034 40 -   375229 I

a score=372765.000000
s ce10.chrX             4213477 561 + 17718866  
s cb4.chrX              9324540 564 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1184949 564 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2473018 564 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  150074 561 -   375229  
i caeJap4.Scaffold17084 I 40 I 1202

a score=354.000000
s ce10.chrX             4214038 3 + 17718866 TAT
s cb4.chrX              9325104 3 + 21540570 aat
i cb4.chrX              C 0 I 639
s caeRem4.Crem_Contig0  1185513 3 -  4500979 att
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0      2473582 3 +  4147112 aat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  150635 1202 -   375229 I

a score=-714.000000
s ce10.chrX             4214041 3 + 17718866 TGA-
s caeRem4.Crem_Contig0  1185526 3 -  4500979 -gGT
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0      2473585 3 +  4147112 -gaa
i caePb3.Scfld02_0      C 0 I 104
e caeJap4.Scaffold17084  150635 1202 -   375229 I
e cb4.chrX              9325107 639 + 21540570 I

a score=-23739.000000
s ce10.chrX             4214044 199 + 17718866 --------------------GTTT-----GA--------AGAAACAG------AGTC----------------AAAC------------CTCTTAAAGGTGGA---GTACTAAAATCTAAGACTTTGCTTTTTT------------------AAAACCAAAATGG--------------------------------------------------------------------------------------------------------TTTTTAGGTGTTGGATCAGAGCTCAGTAAT----AATGAG----AATAGAGA-----AATC----TGGTGGTTTTTTTTCAACTGTCAAATTTGATA-----------TTTATATGCAAATGTCA--------------TATTTAA------------------AAAAAAT------GGTTCCAC------TTC
s caeRem4.Crem_Contig0  1185529 403 -  4500979 TTTGGTAGTTTTCCCTTCCCATTTCTTGTGACCTTCTATACCAAACGTTCCCCAATCCCCTAACAAACATAGAAAAC------------CGAGAACAAGAGAT---GTTTGGCCAGAGCGGATCATAATTT---------------AGTAGTGAGACACAAAAGAAGGTTTTAGGCGGCAGCTGGGCCTACTCGACGCAGGCCTACGCTGCGAGACAACCAAACCTAGCGAGGGCAGTGTCAAGGGCCGAGGAATACGCAGATGGTGTCTCCCCATTCGTTGTTCTACAGTTGCGTCATTGGCAACGAAGGTTATTCAGGCCGCGTAATGCGAATGCTG--CTGTTTGAGAATGTCATTGGAGATAGCAAGACAACGTTTAGATTTTTCTATCGACAGTACTATTTGTCTTCTAA------------------TCACAGT----TGGATCTCAA------TCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2473692 321 +  4147112 --------------------GTTTTCAGAGA--------ATAAAAAG------AATGTCTTATCAAGATTCGTGATCGCGGTTTTATTACGTCAGAAAGCGGTACAGTAAGATTAGATGGCATTGTACtttttttAGACTTTGATCAAtcggaagacaaaaaagaacatgtt---------------CTA----------------------------------CCGATGAATGCAg--------------------------------ttcttttttattg-catACGGtaaagtaa-----aacaaa----aatcaagatgC--AATG----tacca--ttttttgtagaatcgattttcgatcat---------tttatgttcaaattttgagatgaaaaattattatttgaagttttcccgTTATGATTTCGCAATAGAGTAGATTTCAATGCGTTTTC
i caePb3.Scfld02_0      I 104 C 0
e caeJap4.Scaffold17084  150635 1202 -   375229 I
e cb4.chrX              9325107 639 + 21540570 I

a score=-1049.000000
s ce10.chrX             4214243 5 + 17718866 --TACTA
s caeRem4.Crem_Contig0  1185932 5 -  4500979 --AGCAA
i caeRem4.Crem_Contig0  C 0 I 117
s caePb3.Scfld02_0      2474013 5 +  4147112 --AGCAA
i caePb3.Scfld02_0      C 0 I 94
s caeJap4.Scaffold17084  151837 5 -   375229 TACGC--
i caeJap4.Scaffold17084 I 1202 C 0
e cb4.chrX              9325107 639 + 21540570 I

a score=36157.000000
s ce10.chrX             4214248 83 + 17718866 ACCTGATATTCTCCCTCGCCGGATACCTTTCCACGATTTGT---------TGTTGTTTTTGCTGTAGCCGT------CACTGACTGCGGTGCCATTTT
s cb4.chrX              9325746 89 + 21540570 ACCTGATATTCTCCCTCTCCGGAGCTCTTTCCACG---TGTCGACATTGCTGTATTCTTTGCTGTACTCGT------CACGATCAGTGGTGCCATCTT
i cb4.chrX              I 639 C 0
s caeRem4.Crem_Contig0  1186054 80 -  4500979 ACCTGATACTCTCCTTCTCCCGATACTTTACCACG---agt---------tgtagtttttgtggtaGCCGT------CACTGACTGCGGTGCCATCTT
i caeRem4.Crem_Contig0  I 117 C 0
s caePb3.Scfld02_0      2474112 80 +  4147112 ACCTGATATTCTCCTTCACCGGATACTTTTCCGCG---TGT---------GTTCATTTTCGTTCCTGCCGT------CACTGACTGCGGTCCCATTTT
i caePb3.Scfld02_0      I 94 C 0
s caeJap4.Scaffold17084  151842 86 -   375229 ACCTGATATTCGCCTTCACCGGTTCCTTTTCCACG---AGT---------GGTTGTTTTTGAAGTGGTAGTGATGGCGACGGACATTGGTGCCATCTT
i caeJap4.Scaffold17084 C 0 I 18

a score=-1455.000000
s ce10.chrX             4214331 24 + 17718866 ATTATTAGCAGATGAAATTGCTGG---------------
s cb4.chrX              9325835 39 + 21540570 CGATGTTGCTGTAGCAGTGGCAAGAGTTGGAGCAATGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1186134 27 -  4500979 ACTGGTTGCAGAAGCAATCGAAGG------------GGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2474192 27 +  4147112 ATTACTCGCAGAAGCCACTACTGG------------TGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  151928 18 -   375229 I

a score=16576.000000
s ce10.chrX             4214355 65 + 17718866 GGCTGCAGGAATGACGGCTCTAGCAAACGTCGAAGACGTGGTCAACAAATTTTTCGGAACAGCGT
s cb4.chrX              9325874 62 + 21540570 AGCGGCCGGAATAACAGCTCTGCCAAGTCC---AGTTGAGTTTAACAAGTTTTTCGCAACAGCGT
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0  1186161 62 -  4500979 ACCCGCCGGAATGACGGCTCTGGCAACTCC---AGACGAGGTCAGTAAACTTTTTGCGGCAGCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2474219 62 +  4147112 GGCTACAGGAAGGACGGCTCTTCCTGCTGT---AGAGGTGGGTAAAAAATTTCTCGGGACGATGT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  151946 65 -   375229 GGCGCCGGGTTTGGCAGCAATCGCCGCTGCCGTTGTCGTGGTCAACAAAGTCTTAGAAATATTGT
i caeJap4.Scaffold17084 I 18 C 0

a score=-3313.000000
s ce10.chrX             4214420 35 + 17718866 ---TCACAGCCTGCAAATAA-----TCATATTTTTAGTTGTAT
s caeRem4.Crem_Contig0  1186223 34 -  4500979 ---TTACttctttcttgaaa------aatatttgaatttataa
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      2474284 28 +  4147112 ---Atggttctttctgaaa------------ttgaaaatatat
i caePb3.Scfld02_0      I 3 I 17
s caeJap4.Scaffold17084  152011 43 -   375229 TCACAGCGTCTTTCTGTAAGCCGAATGATTATTTTGGTCTCAt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9325936 37 + 21540570 I

a score=15149.000000
s ce10.chrX             4214455 91 + 17718866 -----------TCCAATGCTGATTTCCAACCTCCTCATCCGCTCGGCGCTTGGGTGCGCGTTGCTCGTTGTCGGAGGAAGTGCCAGGTGCTTTCTGCAACA----A
s cb4.chrX              9325973 75 + 21540570 -----------GCTATAAATATAT----ACCTCTTCATCCGCTCGGCGCTTTGCGGCGCGTTGCTCGTTGTC------------CGTTGctgttggctgaa----a
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0  1186263 83 -  4500979 -----------TCTATTGAAAGTT----ACCTCCTCATCCGCTCGCCGCTTCAGTGCGCGTAGCTCGCTGTCGGAA--------GGGTTCGGTTTGTGGAACtgga
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0      2474329 76 +  4147112 -----------taaatttctGATT----ACCTCCTCATCCGCTCGTCGCTTTA---CGCTGTTATCAGGGTcgaaa--------ttgtttgttttctgaaa----a
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17084  152054 98 -   375229 ttttttGGTATGAAATCTGTTCTT----ACCTCCTCATCCGCTCGGCGCTTGGGTGCGCGTTGCTCGTTTTCGGAGGCCGATGCTGGAACTCTCTGAAATG----A
i caeJap4.Scaffold17084 C 0 I 2380

a score=31.000000
s ce10.chrX             4214546 9 + 17718866 AAAATCGAT
s cb4.chrX              9326048 9 + 21540570 aaaatcgat
i cb4.chrX              C 0 I 2476
s caeRem4.Crem_Contig0  1186346 8 -  4500979 aaaaacaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2474405 6 +  4147112 aaagtt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I

a score=-13692.000000
s ce10.chrX             4214555 244 + 17718866 TATAGTCGTGAA-------------------AAATAAGAAAAAAATAA----ACTGACATCGTTAAAATTTATATCTATGTCTATC------GAGAGTGATCGCCGACGTTTTCTATCATTATCGAGAGTAAAATGGAAATTCAT-------GAATAGGGTGA------------------GTACTAGTGAG---AATAAAGCGTCTGAGAGAGAACGCACAAGAATGGGCCC---------------GGTACAACTACGTAGACGG---------------------------------------------------CCCCCCCGACTGAG-------------AGCAGATGA-GAGGCGAA---------------------GAG-GCGCAGACGGCAAAA---
s caeRem4.Crem_Contig0  1186354 386 -  4500979 gataattATAGG------------ATGCAATAGATAAATCAAATTCAACGAAACCAACATCTTCAGTTTGTTCGTCTTCTTCTAAAGGTTCCAAAATCAAGATTCGAGCTTTTCTATATGTATCGAAGACATTGGGAAGTCTCATACCACCGAATTGAAATATTTGCTGATGTTGGGCGACGTGTTAGTAAG---AAGCCGGC-TATGCGAACGAATATA-ATGAGGAAACCTTCGGGCCTTGGCAATTGGACCATGAGGGAGGGGAGGATCGCCAGAGACAGAGAGAAAGCTCATTTGTGTGCGCAAAGAGAAAAAGGTCCCTCGAGTGGTCGGGTCAACCAGGGTCAGATAACGAATCTAGGGTTCGGTCCGAACGATTTATGAGTGCACTGGTGTCGAAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2474411 263 +  4147112 tatattcatgagaaattgatgaaaataaagaaaatgagtaaaaactAACAATATGAACCctgccattttttctgaatcgttTTATTGGT---GAACTAAAAGAGcgacttcttctcc---tcttcggAATATTATGAAA--------CATTAGAGTAGAATAT------------------GCTTCAGTCAGTCTAATCAAGC-T-CGAGAGCGAATG------------------------------TGTATAATGAGGGAAGGGA-------------------------------------------------------CCCGAGTGGT-----------------GATG--GAGCCTAGCGATTGAAAtggaagg-----gagagagagagagtcggAGGAA
i caePb3.Scfld02_0      C 0 I 178
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=-1469.000000
s ce10.chrX             4214799 117 + 17718866 CAGCGGCAGGATT--CCCCGCAACCGAGAAAAGGGGTCA---------------ACGTAAATGTGTAGGGGC---------GATTTCGCAACAATCGTTCTTATTAAATACTCGT-TTCCATAAGTTTTGATGGAGAAGAGCAC
s caeRem4.Crem_Contig0  1186740 144 -  4500979 TAAGTACTGGTCTGACCTAGCACTCTTACAAACGGTTCAGTCCATGTGCATGAGACATTACTGCCTAGAGGCCGTCATACGGAATCGAGAGAAACCATTATCAATCAATTAATGTATTTCACGTCATTTTATTCTGAGTCTCAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2474674 178 +  4147112 I
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=-2602.000000
s ce10.chrX             4214916  96 + 17718866 --------ATTAAAAAGATTA----AAAACT---TTAAA-----GAAATTGAATATTTCTA--AACCATTTTTATTGGAATTTTTTTAAT----------------------AGATCCACGTCAAAAATAAATTAAAAAT
s caeRem4.Crem_Contig0  1186884 134 -  4500979 ATTAAAGAATAAAACAAACTCACTTAACATTCAATTAAAACACCGGAATTGAATCTATCAATCAGTTGTATTGATTGAATAGTTCCTAACCCTCG------TATTCTCACGTAGACCAGCGTAAATAATACAAAGAAAAT
i caeRem4.Crem_Contig0  C 0 I 131
s caePb3.Scfld02_0      2474852 122 +  4147112 --------ATGGGAAAGATTGTTCCGAGtct---ttactgttttgaaattaatcccaaaaa------atgtttatcaaaga-ttctcaattttcagtttactAATTTTACTAAAACCGCAATCGAAACTAAACAGAACAA
i caePb3.Scfld02_0      I 178 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=-2831.000000
s ce10.chrX             4215012 107 + 17718866 CAATGA----CGGCC-------------------TGCTCGT-----------------------------------------AAAAATGCTTACAGAGATGGT-----------------------------------------GCGAGAAAAAAG----------GAACAATT-----ACTGTCGTTGATC---------TCAACGTTATTGAGTAAATCGAGCT-----AAAAGGATTA
s caePb3.Scfld02_0      2474974 241 +  4147112 ATATGATTCTCAGTCAACATCTAAGGTTCACATATGTTCGTTCTCACCTTTGGTGATCACAGCAttacaaacaaaaagtgagaaaattggCTGTGAATATGGGCGATaagaagaacatgggaatgtgaaaaaggtccgaacggagtgagaaaaaagaaagtgagaagaaaagtgagtaaaTTGTTGTTGATCCAACAAGAATCCACTGAAATGAGCGGATCAaccccaaaaacaaaaattg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I
e caeRem4.Crem_Contig0  1187018 131 -  4500979 I

a score=13852.000000
s ce10.chrX             4215119 322 + 17718866 --------GAGAGAGAGAAAGAGAAAAATTCGATAACGAC--TCCATCGTTTGCTGTGGGAAATAAAAGA--------------AGTGAGCCCGAGCCTGAGCCCTACGTCATGCCTCCAACTAGATAAGATATCTCGTGATGGTGGAATGACTGATGGCAGATCATTAGCAAGAAGCTAAATTAGTGGATTTCAA----------------------AACTAGGTC-----GCGTGG--AAATTTATAGGCAT-------TTCGACCTAC----------TATTCTATTGTTTTCG----------GGATCCGAAAAAAGAGCCAACTAGTGTAAAGTGACGGAGCTTTCAATCAGATAAAAGT----GATCACAGCGGT---------------------CCTGGGGAAATGTAAAGAACACTC------------------------A
s caeRem4.Crem_Contig0  1187149 418 -  4500979 --------GAAACAaagatataaaaaaagaagataaccactatttttcaagtaggatgagaaagagagactgCAGCAAATGAAAAGAGAGTTCGAA--------ATGCGTCATACCAC--ACAAGATAAGATATCTCGTGATGGCGGAATGACTGATGG-AAACAATCATC--GTTTCTAATTTATTGAGTTTCAGTACTTGCGTTCCGGTTACAAAGAATTGAGCCGGGATGCGTGGTTGAATTTATAGGCATCGTTtggttctctcttt----------tttcttatccgcTTCGCAAAAAGAGTGCGTccg-aaaaagtgtcaaaaagtGTAATGAGAGACGGCTTTCGATCAGATAAAGTCCCTTAGCCAAGAGGgtaaaatgaagaattttttaCAACCCGGCCAAAGAGAAAGTTCATTCCCGTTCTGTTAGAAAGAAGAGGCA-
i caeRem4.Crem_Contig0  I 131 I 60
s caePb3.Scfld02_0      2475215 369 +  4147112 agaaggatGAAACAAAGAT-----AAAAGAAGATAACGACT-TCTTTCAACTGAGATGTATGACTGAGCC--------------AAGAAGTTCGAA--------ATGCGTCATACCAC--ACAAGATAAGATATCGCGTGATAGGAGAATGACAGATGG-AAACCATTAAC---TCTCTAATTTACTGGATTCTAG-GCTTCTGTTCCATTTCGAAAGGCATATGCT--TATCCGtgagaaaagtaaaaagagttttgtctctccctcttttacttttctatttctgatccatttcg-aaaaagagagGGTCCG-AAAAAGTGTCAAGATGTGTAATGAGAGACGGCTTTCAATCAGATAAAATC-----ATCACGGCGGCA-------------CTAGCACCGCGGGTTAAAGTGAAGAACATCT-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=-2581.000000
s ce10.chrX             4215441  21 + 17718866 CTTGCGTCA-----------TTATTC--------ACTAGA--------------------------------------------------------------
s caePb3.Scfld02_0      2475584 102 +  4147112 CTTACAACATAGGAGAAAGTTCATTCCCGTTCTGCCTAAAAAGGGGCAGGACAGTCTACGAAACCCAACGCGGCAAACGCAACGTCGGTTTATATTCTGCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I
e caeRem4.Crem_Contig0  1187567  60 -  4500979 I

a score=35447.000000
s ce10.chrX             4215462 518 + 17718866  
s caeRem4.Crem_Contig0  1187627 517 -  4500979  
i caeRem4.Crem_Contig0  I 60 I 539
s caePb3.Scfld02_0      2475686 479 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=-8017.000000
s ce10.chrX             4215980 892 + 17718866  
s caePb3.Scfld02_0      2476165 605 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I
e caeRem4.Crem_Contig0  1188144 539 -  4500979 I

a score=273.000000
s ce10.chrX             4216872 1 + 17718866 A
s caeRem4.Crem_Contig0  1188683 1 -  4500979 A
i caeRem4.Crem_Contig0  I 539 C 0
s caePb3.Scfld02_0      2476770 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  152152 2380 -   375229 I
e cb4.chrX              9326057 2476 + 21540570 I

a score=70751.000000
s ce10.chrX             4216873 574 + 17718866  
s cb4.chrX              9328533 598 + 21540570  
i cb4.chrX              I 2476 C 0
s caeRem4.Crem_Contig0  1188684 552 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2476771 553 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  154532 592 -   375229  
i caeJap4.Scaffold17084 I 2380 I 2303

a score=17323.000000
s ce10.chrX             4217447 123 + 17718866 AC-----ACAATACTTATGACGTGGAAAGTATGTG-CCCAGAGGTGGC-------AGCAGGTCGGA--TTGATGAACAATGAC-AAAAACATGGTGCCCCTACACACTCACCATTA----TGATTCA-----CTTTACAAAAATTAAA
s cb4.chrX              9329131 124 + 21540570 acgagagaCAATGTTTATGACGTGGAAAA-TTG------CGATGTGCCCAGAAGCGATGGGCT-----GAAAGGAACGATGAC-AAAAACAGGGT---------CA--CTTCAAACCAACTGACTCATTTACccttacaaaaaaaaaa
i cb4.chrX              C 0 I 1379
s caeRem4.Crem_Contig0  1189236 125 -  4500979 ac-----acaATACTTATGACGTGGAAAA-ATGTG--TCCGAGGCGACTGAAAGGAAGGAGTGGGAAAGAAAGTAACAATGAC-AAAAACAGGGT---------CAGCCACCATCACCTCTGAGTCa-----ctttacaaaaaaactt
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2477324 126 +  4147112 AC-----ACAATACTTATGACGTGGAAAG-ATGTGCCCCCGAGGCAACTGAAAAGAGAGTGTCTTG--TGAAACAACAATGACAAAAAACAGGGT---------CAACCAACATCACAGGTGAGTCa-----ctttacaaaaataaaa
i caePb3.Scfld02_0      C 0 I 1071
e caeJap4.Scaffold17084  155124 2303 -   375229 I

a score=972.000000
s ce10.chrX             4217570 31 + 17718866 TAGAAGGATGAACAA--TGGATGATTAAGGAAT
s caeRem4.Crem_Contig0  1189364 33 -  4500979 ttgagaggtAAACGACATGAATAGTTAAGAAAC
i caeRem4.Crem_Contig0  I 3 I 39
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I

a score=0.000000
s ce10.chrX             4217601 66 + 17718866 TCTGAAAATGATACCAATACCTTTTGGAGGCTCTACACCATCAGTTATGGTATTTTTTGTATTCCG
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I
e caeRem4.Crem_Contig0  1189397 39 -  4500979 I

a score=-2323.000000
s ce10.chrX             4217667 628 + 17718866  
s caeRem4.Crem_Contig0  1189436 551 -  4500979  
i caeRem4.Crem_Contig0  I 39 I 10
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I

a score=0.000000
s ce10.chrX             4218295 27 + 17718866 TCGGTGCCGGTGTCGAGTGGCCGCTGG
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I
e caeRem4.Crem_Contig0  1189987 10 -  4500979 I

a score=5147.000000
s ce10.chrX             4218322 420 + 17718866 TGGTTCTCAACTGACAGCGGGCTGCGACGGCGGCGGGCGGGCGAAAATTTTTTTTTTCACACTCCCAGACTAGACGACGTGG--GTTTGGTTGGCAAGCC-------------TCTCCCTCTCGCATTTTTTTTC--------TTCCTTCGTCTTTTTTTGTGTGCTCC----------TCGTCTTCATGCTCTGCCTTTTTTCCCCGCTATTCCTTTCAATGCATAATATTTTTCGGTTGCCGGGTCGGCTGATTGCAGGAAAAACACGTGTTTTGTTGAAGGAATATAGAAGGAATATAGAGATTACTGTAATCTGTA-CGGGTATTGGTATAA--GAACTC------------------AAAACAAAAACAGAACAGCGCCTAAAATTGTTAATGGTGACGTATGGCCAATGACAAAAATGATTATAACCCATTTCTATGA------TGCTAAATTGTTCAAATATAT-TATATAAAA
s caeRem4.Crem_Contig0  1189997 391 -  4500979 TGGTTCC--ACTAACAGCGG-------------CAGGAAggcaaatattttttt---cacactCCCAGACTAGACGATGTGGTGGTCTGGTTGGCAAGTCATGGCGCCAGCCGGCTCCagttccctcttttttttgtggCTATTCTCTTGGTTTGTTCCCGACTGCTCCGTTGGACACATCGTCTT-------TGCCAATCTTCCGAAACA-----------GCacaatattttttggtt-tagaGATGGTTAA---CAGAGAAAACACGTGTC-------------ATCAAGGAAATGCACAGATTACAGTAATCTGCAGCCGAAATCGGGATGTTTGAGCTCGCATTCGCGTCGGACGGGAAAACAAAAA-------GCTCTTATGATGATTGAT----------------CGACAGAATTGGTT---------TCTTAAGAGATGACTgtcaaat-----aaatatatatatatagga
i caeRem4.Crem_Contig0  I 10 I 47
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I

a score=0.000000
s ce10.chrX             4218742 46 + 17718866 GTTTTTGAACAATTTTGGAATTTTATATTTTGAGTCAAAAAGTGAG
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I
e caeRem4.Crem_Contig0  1190388 47 -  4500979 I

a score=-452.000000
s ce10.chrX             4218788 185 + 17718866 CGTCActtatcaagaaaattaaagcattatcgcatgttcaaacccctacaatgttggaatataaatatt--tcaaacacaattgaaacataaaaCTGGAAGATTTTTTGGTAATTTTAGCACCATAAAAATGATTATTAACAATTAAACTACTGGCCGTAGTCAATCTTTTACATGGACGGCAA--ATA
s caeRem4.Crem_Contig0  1190435 151 -  4500979 CGTCACTGAACAAAACGGTTAAAAATTGATTAGAGACT---ACTTTT----CACCGAATTCGAAATAGTCATGAAACAGGgatagaaaataaaactaa---------tcgtaattttctgaacat-----------tGAATCGTCACACGGCTGGT-----------TTTCGCTCTGCCTGCGATTACA
i caeRem4.Crem_Contig0  I 47 C 0
e caePb3.Scfld02_0      2477450 1071 +  4147112 I
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I

a score=-12688.000000
s ce10.chrX             4218973 249 + 17718866 TTCTGGCAATTAAAAAAAAATCAAAACCAAACTGAAGTTCAAA---AATTTGCTGCTCGTGGTAGACTGTATGAAA-AATCGGTCAGAGATTATCCTAAGTATAAGTTTTTGCGTCAT----------------------AAAAGAAT-------TGAAAAAAAGAAATGGAATTGAAAATTCTATCG---ATTTTTTTTTTGGTTTGT--------GAGATTTCATCAAGGAACATTCAAGTGTGAGGGAAGAGAAATAGGAAAAAAGGAAAGTTTT--GATGTAAA-------GATGTGA-----------------------------
s caeRem4.Crem_Contig0  1190586 121 -  4500979 --------------------------------------------------------GTTTGTCa------ttgaa--atccaaaaagagaacattt----ttcaag------tgtCAC-------------------------------------TAAAAGAAGGTCTC------------CCTCTCGCA---------TGTAG-------------GAA------------------CATGT------------------aagaaaatataagttttccGATGGAAAAACTTTCGATGTTG-----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2478521 290 +  4147112 tcttgaaaatgaaaaaagga--aaaggaatacggtagattgaatagatttttttgCTCTTGTCAGCCGGTTTGAAATATTTGGCGAGAGattatct----ttcaaaatattttgtcaTGTCCTTTTACCGGTTTGGGAGTATAAGAATcaatgtatgaaaaaaaacctc--------atgTTCTATCGCAGATTTGGTTTGTGGCCTGAGAACGATTGAAATTTTGTCA--------TCACgttcg-------------aaaagagaaaaaaagtttt------gaagggCCTTGGATACAGTTTTCGTTCGCCACATATAGAGAATATGG
i caePb3.Scfld02_0      I 1071 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9329255 1379 + 21540570 I

a score=24293.000000
s ce10.chrX             4219222 256 + 17718866 ----------AGACAATGTGTTGGACGAGAAATAAAAATGAATCAGCAGAAAAAAGTGT-TTCCTATG--GTAGGTAGATCG-AAACTTGGCGAAGGAGGGGGGGGGGGGGGGGGTGGAAAAGCAGAAT-TGTTGACATGGATGGAGCA--GGAAGCAATCTTTGAGACGATCGATGAAAGAGAAAAAACATTTT----TGCTGGCA-GCGGCGG-------CCCTATCTTGAAAATTCTGAGTGG----GAAAATGTTAGAAACAAGTATGTGAAGAAAATACTGTGA-
s cb4.chrX              9330634 227 + 21540570 ----------AGACAATgcgataaaaaggaaaaaattctgaatcatcAGAAA----TGT-TTCC-------AAGGTAGatcgaaaaagttttgttaGACGAGAGGAGGCAAGACGAGAGAAAGCGAAAT-TGTTGACAGGGATGGAGCC--GAAAGCAATCTTTCAGGCAATCAatagggagaaaaaaaatttcc----caactGCC-GCGGCGCCGCTTGACGCtatctcgaaaattcagaa-------aaaaacga--------------------aaatgt------
i cb4.chrX              I 1379 C 0
s caeRem4.Crem_Contig0  1190707 244 -  4500979 ----------AGACAATACGatagaaatggaaaa----tgaatCAGCAACAA----CGT-TTCCTATG--GTAGGTAGATCGAAAACTT-----------AGCGGAGGAAGGGAGAAGATGGTGAAAAT-TGTTGACATGGATGGAGCA--AAAAGCAATCTTTGAGGCAATCaataatcacaaaaaaaccTTCCTCCGCAA--GCCAGCGGCAGCGATTGACGCTATCtcaagaattcagaaat-----aaaaacgattgaaactagttttc---acaaatttcgcta-
i caeRem4.Crem_Contig0  C 0 I 22
s caePb3.Scfld02_0      2478811 248 +  4147112 AGAAACATTTGGACAGTACGATGA--------------TGAATCATTCAAAA----TGTCTTTCTATGAAAAAGGTATATGAAAAACTT------------GAGTGGGCAGTGAAGGAATTGGCAAAATATGTTTACAGCTATGGAGCAAGAAAAGCAATA--TGAGGCAATCAATATTGACGAGAAAACTTCTC----TTCTTGTC-AC--CGGTGATCGACactatctcaaaaattcagaaagaagaaaaaagtgttagaAACAAGTTTTC---ACTTATTTTACTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I

a score=-2071.000000
s ce10.chrX             4219478 34 + 17718866 GAAGAAAAAAGAAAAAAGATTGGTGTGAAAAAAT---
s cb4.chrX              9330861 18 + 21540570 ------aagagaaacaagttt------------ttt-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2479059 21 +  4147112 ----CAAATAGACTGTAGATT------------TTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e caeRem4.Crem_Contig0  1190951 22 -  4500979 I

a score=-4514.000000
s ce10.chrX             4219512 51 + 17718866 TCAGATCAAATAAATTTCAATTATCAGGCT-CTATAGTATAAATGAAAATAA
s cb4.chrX              9330879 43 + 21540570 -----tctctt--ttatctATTCTTACCTCTCAAc--tttcgctgaaaatca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1190973 50 -  4500979 tcagatcttca--ttttcaataaagaGTTTTTCATGGTTGAGACAAAAGTCA
i caeRem4.Crem_Contig0  I 22 I 29
s caePb3.Scfld02_0      2479080 36 +  4147112 -----TCGATT--CTAACAACAATCAGTTT-------TAGGAGTATAGGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I

a score=-2908.000000
s ce10.chrX             4219563 37 + 17718866 AGTGCAATGAAAACAT-ATAACTTGTGATGAATCTAAA
s cb4.chrX              9330922 23 + 21540570 ----------aatagtGACAA-----GAAGAAAGTCAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2479116 20 +  4147112 ----CTTTGAGATCATTATC--------------TCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e caeRem4.Crem_Contig0  1191023 29 -  4500979 I

a score=13648.000000
s ce10.chrX             4219600 353 + 17718866 AG-----------CTTTTTTCTG-------ATCATCAGTTTTTACTGATCAAAAACG------TGACCAACTTGCCAAAAAAAAAATGCTCGCCACCTGACTGAGTC-----TTTCCTGTCGCCACGAATTAGACTGAC-AAAGTTGTG----------TCTG-------TTCAGCCAGTCTGGACAGAGATGTAAGGAATATTGGGCAACG-ACGTCC---AATC-GCCGGTTTGGAAATCGGGTGAAGGAAAAAA----------AGGGGAACAGGAAGACGGGGCGATGTCCATTTC-GCGAAC-AGACCA------ATCCATTCA-TCGAGGGCGTCTG----GTCGGATCTGTGTAA--------AAAACGTCCAGATGGT-------GAAAG--GACTCGGAAAAGGGTACCATTAAACCGATCGAGGCCTGGTCTGTT--------------------------------
s cb4.chrX              9330945 374 + 21540570 AG-----------AAGAGATTTgat-----accattttttttca---gaaaacgtcA------AGAAACACACAATGCGATGCTCTTGCTC-TTACCTGACtgcttcgtttttttcttgttgtcACAAATTAGTCTGACAAAAGCAGTC------ACTGTCCGAAATGGTTTTGGA-------CACGTAT-----AGGACTA---GACATCGTAGATCCAGTAGTCACCCGGTTTTAGAATCGGAT----GAAAAAACGCAGAAGGGAAGGGGACGAATCGAAACGACGATGACGATTCCTACGAACGAAACCAATTTCCATTCA-----TTGAGGTCGTCTG----TTCGGATTGAGAAGGAGAGAAATAAATTG-GCAGATGATGTGGTTGAAGAGGTGGCTCGcgaaaaa-------------------aatcttatttGATAGCCCTGTA-----------------------
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig0  1191052 345 -  4500979 AG-----------CAGTTACCCG-------AACATTGAACTTCacaggaaaaaaacagaagtgGGATCCACACGCTGAAAAACGTATGCTCGTCACCTGACTTCGTC-----TTTCCTGTCGTCACAAATTAGTCTGAC-AAAGCAGTCGGCTTGATGGTCTGAAGAGAATGTGAA--GTCTGCACA--------AGGGCTA---GGCATCGGAGATCC---AGTCGGGCGGTTTGAGAATtggtc----aaaaaaa----------agaaggacgA-----------GACGTCGATTTCAATGGAC-AAACCA------ATCCA-----TTGAGGTCGTCTG----TTCGAATCGGAAAGA--------AAATTG-GCAGATGGT-------AAGAG--GGCTCGTGGAAGAGTACTA----------CATATTCCATTTTGATTGCCCTGTA-----------------------
i caeRem4.Crem_Contig0  I 29 I 7
s caePb3.Scfld02_0      2479136 362 +  4147112 AGTTTTTactttcaagaaattcaaCCTTCGAACACTGAACACta--agagaaaaatg------tgacCAACGCGCTAAGAACCTAATGCTCGCCACCTGACTGCTAC----TTTTCCTGTCGTCACAAATTAGGctgacaaaagaagaa------gaagtctg-------TTTGAA-AGACTGGACA----------GAAAA---GACATTGGAGATTC----ATCCGACGGTTtgagaatcga------gaaaaaa----------cgagGGA--A-----------GACGATGTTTTCTGCGGCC-GAACCA------ATCCATCTATTTGAGGTCGTCCAGTCTGTCGAATCGGATGGA--------GAACTGCGCAGATGGTGCG----AAG----GGCTCGGAGAAAG-------------------GGTATTATTTGATAG-CCTGTAGAAATATAAAAACGACGTCTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I

a score=-7858.000000
s ce10.chrX             4219953  65 + 17718866 AGAGTGCAAAAATAT----AGGAAAAAAAATACAAAAAGAA---------------------------------------------------------AATGTAAGATG----------------------------ATTGAGGACATCTTGTC---
s caeRem4.Crem_Contig0  1191404  76 -  4500979 ataaaacaaaaatttttatagtACAACCAAGACAGAAAGGCCGACCG---------------------------------------------------AATAGAAGCTT----------------------------TTTGATGGTTTCATTGCC--
i caeRem4.Crem_Contig0  I 7 I 42
s caePb3.Scfld02_0      2479498 138 +  4147112 -------------------AGTGCTTCGCAGATGGAGAGGCCAACTGTGCCCCGCATTCGACGTGGTTGAATTTATTGCTTCCCATTTCATCCGATTCGATCGAtgcttgcaaaaaaaaatcataaaaaatccCAGATGTTATGAGTTCGTTTGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I
e cb4.chrX              9331319 103 + 21540570 I

a score=-4087.000000
s ce10.chrX             4220018 17 + 17718866 AGAGCCTTAAGTTAG----------------TT
s cb4.chrX              9331422 15 + 21540570 AGAGCTATGAAGGAA------------------
i cb4.chrX              I 103 C 0
s caeRem4.Crem_Contig0  1191522 33 -  4500979 ACAGCTGTTTAGGGAGTGCTGGGTAAAACGAAG
i caeRem4.Crem_Contig0  I 42 C 0
s caePb3.Scfld02_0      2479636 27 +  4147112 TGggtaatgaatgaa------aaaaaaactgtc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  155124 2303 -   375229 I

a score=29371.000000
s ce10.chrX             4220035 180 + 17718866 GGACATTGGGCATTCG--AAAAACCGGA-----ATAAAATTG------AAAATCGCCTGAGGTCTGAAGAAGTCTATTGTAAAACAATGTACAGTATACCAGTTTCTCAAT----ACAATAGT---CGCCATGCTGGCTAATACTTCCATCACACA--------------------CAACTACTTATACAAGTGAACACACCACCACGCACAAAAACAGA
s cb4.chrX              9331437 170 + 21540570 ----AATGACCGCTAGATAGGAACCAGAATATTATAAGATCctaacaaaaaatct-------------gaagtgAATTGTTAAACAATGTACAGTATACTAGTTCTCTCTTTAT-ACAATAGTCGTCTTCATTCTGGCTAATACTACCACCACCACTTATAT------------------------TACCAGT--------CGCCACgtacaaaaacaga
i cb4.chrX              C 0 I 515
s caeRem4.Crem_Contig0  1191555 156 -  4500979 ACACAATGACCATGTGGTAAGAACCGGA-----ATGAGATCT------AAAATCT-------------ATAGTCAATTGTTAAACAATGTACAGTATACCAGTTCCctccatacaaaaaaaatcaacgtcTTTCTGGCTAATGCTACCATCACAAC------------------------------TACTGGA--------CGCCACCt--aaaaacaga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2479663 163 +  4147112 aaagaatga---------aaaaaccgGA-----ATAACATCTC-----AAAGTCT-------------GAAGTCGATTGTAAAACAATGTACAGTATACCAGTTCCCCACT----ACAAAAGT-----------TGTCTAATACTACTAGTACTACTACAATCATCCTTCCCACTTCAACTACTTACACTAAT--------CGACGCCT--AGCACCAAA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  157427 145 -   375229 GGACACTGGGCAT-----TGGAACCGGA-----AT---------------------------------GAAGTTCGTTGAAAAACAATGTACAGTATACCAGACTCTCAAT----ACAATAGT---ctaactactaactactactactactaccactacta---------------ctattactattactGGG--------CGCCGCAC--AAAAACAGA
i caeJap4.Scaffold17084 I 2303 I 1064

a score=529.000000
s ce10.chrX             4220215 38 + 17718866 ---CAGGGGGAAGAGGCAGTTATG-GACGTTTTCAATTCGAC
s caeRem4.Crem_Contig0  1191711 39 -  4500979 ---gaaagagaCGGGACGATTGTTGGGTGTTGTCTATTCAAC
i caeRem4.Crem_Contig0  C 0 I 512
s caePb3.Scfld02_0      2479828 28 +  4147112 TGTAAAAGCAA--------------GCTGTTTCTTATTCAGC
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9331607 515 + 21540570 I

a score=702.000000
s ce10.chrX             4220253 23 + 17718866 ATAGTTGCCAAAAAAAAAACTTT
s caePb3.Scfld02_0      2479856 23 +  4147112 ATAGTTGAATAAACAATAGTTCT
i caePb3.Scfld02_0      C 0 I 335
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9331607 515 + 21540570 I
e caeRem4.Crem_Contig0  1191750 512 -  4500979 I

a score=0.000000
s ce10.chrX             4220276 1247 + 17718866  
e caePb3.Scfld02_0      2479879  335 +  4147112 I
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9331607  515 + 21540570 I
e caeRem4.Crem_Contig0  1191750  512 -  4500979 I

a score=318.000000
s ce10.chrX             4221523 72 + 17718866 AAACTTAAAGGCGAGCTATCATCGGACGACGAGAGGGCACACACATTGAGAATGGGATATGCAGAGCTGGCC
s caePb3.Scfld02_0      2480214 53 +  4147112 AAACTCATCGGGAAGCTATCAGCAGA-GCCGAG--GGCAGAGA-----GGAAAGGAATAG-----------C
i caePb3.Scfld02_0      I 335 C 0
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9331607 515 + 21540570 I
e caeRem4.Crem_Contig0  1191750 512 -  4500979 I

a score=2404.000000
s ce10.chrX             4221595 10 + 17718866 GTCCCAATGC
s cb4.chrX              9332122 10 + 21540570 GTCCCGATGC
i cb4.chrX              I 515 I 1
s caePb3.Scfld02_0      2480267 10 +  4147112 GTCCCAACGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e caeRem4.Crem_Contig0  1191750 512 -  4500979 I

a score=18774.000000
s ce10.chrX             4221605 182 + 17718866 TCACAAGAGAAGACGG-CCTTCAATGGCCCAACCACGCAGCCAGAAGGGGTGGAGCAATAATAGGCACCCCGACAAGAAGCCCGACAACGTCATTCAATGAGAAC-------TGGAGACGGTTAACA--AATTT-------TTAAA-AGGAAAGGCAAAAAA------------------------------ACATAAAATAGTTGCCTACAAAATTTCTGGAAAAAAAA-------------------------
s cb4.chrX              9332133 175 + 21540570 CCACACGAGAAGACCG-CCTTCAATGGCCCAACCACGCTGCCAGAAGGGGTGGAGCAATAAT-GGCGCCTCGAGacgaa-------------agaaaagaagaagaagaataaagaagagg---aag--aattc---TGTCCTCGA-CGCCATGAAACAGAA------------------ATGGATTTCCC------TCAAAGTTCT-------ATTTCTAGATAAGAAA-------------------------
i cb4.chrX              I 1 I 1123
s caeRem4.Crem_Contig0  1192262 223 -  4500979 TCCCACAAGACGACGG-CCTTCAATGGCCCAACCACGCAGCCAG-AGGGGTGGAGCAATAAT-GGCACC-CGAGAAGAAGCTCGTCCACGTCATTGCATAAGAACACGAATACAGATAAGGCTCAGG--CTTTCATTTGgcatgaa-aaaaataacacaaaaGATCTACACTTCCTGGTTGTggattttctcatttattggaattttttgaataatttttttccaaaaaa-------------------------
i caeRem4.Crem_Contig0  I 512 C 0
s caePb3.Scfld02_0      2480277 233 +  4147112 --TAGAAAGGAGACGGCCCTTCAATGGCCCAACCACGCAGCCAGAAGGGGTGGAGCAATAAT-GGCACA-CGAGAAGAAGCCTAACCACGTCACCAAACAAGACCATGAATAAGAATTAGGCCAAGggactttcttttttcatcaagaaaaatGTCACAAGA---------------CTTGGAAAgcctctcatttctt---tttcattaagAAATctttttgtaagaaaaaaatctaagaaattgaaaaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  157572 1064 -   375229 I

a score=-1357.000000
s ce10.chrX             4221787 31 + 17718866 TTA-----AATTTTTC-----TAAATACATACTAGACATCG--
s caeRem4.Crem_Contig0  1192485 35 -  4500979 --------aaagctctatatatatatatataagaAATAATTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2480510 41 +  4147112 tcacgaaaaataATCCTAACATATACACCTACTGAATACCA--
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9332308 1123 + 21540570 I

a score=-209.000000
s ce10.chrX             4221818 38 + 17718866 TGTTTCATACTGTAAATCG-----------ACAGTTCCGAAGGTTGCCT
s caeRem4.Crem_Contig0  1192520 49 -  4500979 CATAGAATACTAGGGAACGTTAAAGCTAAAGCATTACCAAGGACAGTCT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2480551 41 +  4147112 I
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9332308 1123 + 21540570 I

a score=6543.000000
s ce10.chrX             4221856 106 + 17718866 ----CTAAGCAGGAAACTGGACCATAGTCAAGGTTAAGCGCTCCATTGGAAGAAGACAAACTACC---------GACGC--TGAC--GAGACCTTGTTCCTAG---AAAATCGAGGGCGCCATCGG
s caeRem4.Crem_Contig0  1192569 114 -  4500979 CTCCCTAGGTA-GAAATTATACGGTAGTCAAGGCTGAGCGCTCGAAAGGAAA--GACGACGTACGACGTCGTC-AACGTCTCAAC--AAGACCTCGTTCCTAG----AAGTC--GGCCGCCATCGG
i caeRem4.Crem_Contig0  C 0 I 822
s caePb3.Scfld02_0      2480592 114 +  4147112 ---CTGAAGCA-GAAATTGGATCGTAGTCAAGGCTGTCCAACCGAATCGCGG--CAC----TATCGCGTCCTTAAACGCCTTCACAAAAGACCTTGTTCCTAGGAAAAAATC--GGACGCCATCAG
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9332308 1123 + 21540570 I

a score=501.000000
s ce10.chrX             4221962 68 + 17718866 GAATC-------GTTGG-TAGTACACATAAGGAAATGGAAAATTGTGAAAAGGAAGGCATGACTGCTCAAAGTAAT
s caePb3.Scfld02_0      2480706 75 +  4147112 GAACCACGATCTGTTAACCAATACGCCGAATGACATGAGGAAGT-CGATAAGACTAGaataatttctcagaaaaat
i caePb3.Scfld02_0      C 0 I 732
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9332308 1123 + 21540570 I
e caeRem4.Crem_Contig0  1192683 822 -  4500979 I

a score=0.000000
s ce10.chrX             4222030 297 + 17718866 CTAGGATAGAAAAAGGAAGGAAGAAAATCATATCTTATCAAAGGCATTTGAGAATTATGATGAATATGGGAAAATGGGATCTATTATCTTTTTTATTGTTTTTTTTTCATGATAAATTGTGTAGACACACCATATGGTCATAAGAAAAAAAAAGTATCTACAGCAAGGTTGAACTAGGATATCGAAGATTTTAGAATTACTTGTAGATGAACCTCAAATTCGAGTTCTATGAAAAAGTGGGTATTTCAGATGTTTTGATCTTTTTTTTTGCGATGAAGGTATTAATTATGGGATGTC
e caePb3.Scfld02_0      2480781 732 +  4147112 I
e caeJap4.Scaffold17084  157572 1064 -   375229 I
e cb4.chrX              9332308 1123 + 21540570 I
e caeRem4.Crem_Contig0  1192683 822 -  4500979 I

a score=533.000000
s ce10.chrX             4222327 7 + 17718866 AGCCAAT
s caeJap4.Scaffold17084  158636 7 -   375229 AGCTAAT
i caeJap4.Scaffold17084 I 1064 C 0
e caePb3.Scfld02_0      2480781 732 +  4147112 I
e cb4.chrX              9332308 1123 + 21540570 I
e caeRem4.Crem_Contig0  1192683 822 -  4500979 I

a score=-335.000000
s ce10.chrX             4222334 16 + 17718866 TTCTAGGAATCATATC
s caeRem4.Crem_Contig0  1193505 16 -  4500979 TTCCAGGGTGGATCTC
i caeRem4.Crem_Contig0  I 822 C 0
s caeJap4.Scaffold17084  158643  9 -   375229 -TTCAGGCAT------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2480781 732 +  4147112 I
e cb4.chrX              9332308 1123 + 21540570 I

a score=4485.000000
s ce10.chrX             4222350 23 + 17718866 TTCTAGGCGTGGTTAGAATGGTG
s caeRem4.Crem_Contig0  1193521 23 -  4500979 TTCTAGGCGTGGTTAGGATGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2481513 23 +  4147112 TTCAAGGCGTGGTTAGAATTCGA
i caePb3.Scfld02_0      I 732 C 0
s caeJap4.Scaffold17084  158652 16 -   375229 TTCTAGGTTTTGTCGG-------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9332308 1123 + 21540570 I

a score=99622.000000
s ce10.chrX             4222373 389 + 17718866 TTTTATTGGACC--AATGACTCA-CCCAG-----GCCTACTGTAGCTCTCATGAAGATTCAGAAGTCCAATGCA-GCAAGTGGG---CAATGGGTGTGTA-GAGCGAGAGAG------------ACGGGGGAGAATGGGTGTGTGTGTGTAGAGATA-----------GTAGGAGCTCTA-----GGTTCT-GTGCTGC-----ACAGAAGGGACCTACCGG----------TGTCGGACGGGGCCAATTCCTAAA-CTTTTTTT--GGGTTTCATGGTGGATTCAGATGTGAGATCCAGTTGAATCGAAAATAGTCTATGGGTTTGACTAGGCCTTTGA----ACGACAAGACACGATTTGATCGATGCCTGGCAAAGAAATAACACGCGTTTTGAAGAGACCTAAACACACGGTACCATTTTGA---AGGCAGCGTTCTGTCAGCGGAGGGCGC
s cb4.chrX              9333431 409 + 21540570 ttttattggaCCATAGTGACTCATCTCATTGAGGGCCTACAGTAGCTCccct-aaaatttagaaatccaaCACA-ACAAGTGAC---CTGTG---GTGGAGgaa-gagagataaaaagaa---agattgacagaaagaaaaagcgatagaacatagaaacgacatagaGTTAAGGCTATGCCAGTAGT----GTGTT--------TGAGAGGGACCTACCGT-AGTT----------------GCTTATTTTTAAGGAACCTTCA--ACATTTCACAATGGATTCAGACGATGGATCCAGTTAGATGGCGAATAGTCTAT-GGTTTGCCTAGGCCCCCCTCCGAACGACAAGACCCGATTTGATCGATGTTGATCGTGTAGATAGTGTGCTTTTCCCGGAGTCCCAAACATTCCCTACCATTTCGA---AGACATCGTTCAATGTGGGGAGAGTAC
i cb4.chrX              I 1123 C 0
s caeRem4.Crem_Contig0  1193544 409 -  4500979 TTTTATTGGACC--AATGACTCA-CCCAT-----GCCTACTGTAGCTCTCGTGAAGATTCAGAAGTCCAATGCA-GCAAGTGGC---CAGTGGGTGTGga-gag-gaaagagagagagag---agagagaaagagaggatgtgtgtaagaagagaga----------gTTTCGAGCTCCCTCAGTTGTGTTAGTGTTGA-----ACGGGAGGGACCTACCGTCAGTTAGGAGTGCCGCACCTcgtttctttt-----actttttt--gctGTTTATGGTGGATTCAGATGATGGATCCAGTTGGATGGTGAATAGTCTAT-GGTTTCGCTAGACCATCAT----ACAACAAGACACGATTTGATCGATGCCTATCGACTAGATAGTGTGCTTTTCTAGGAGTCTCATACGTATTCAACTATTCCGA---AGACATCATTTGAAATGCGGAGAGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2481536 379 +  4147112 TTTCATCGAACC--AGTGACTCA-CCAGT-----TCCTACTGTAACTCTCTTGAAGATTCAGAAGTCCGATGCA-GCAAGTGGC---CAGTGGGTGTGGA-GAG-ATGAGAG------------GGTTTATGGA--------GTGAGAGGGAAGAGA----------------AGCTCCC-----AGTGTTAGTGCCCA----GGCAGGAGGGACCTACCGT----TAAGGGTGCTGCGCCCTcgttttctc-----attctctt----tttctaaggtggattcagatgaagaatcCAGTCAGATCGTGAATAGTCTAT-GGTTTGGCTAGGCCATCGA----ACAACAAAACCCGATTTGATCGATGCCTGTGAACATAATAGTGTGCTTTTTCGAGAGTCTCAAACATTGGCTACCATTTTGAAGGAGACATCGTTCAAACAATGGAGGGCGC
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold17084  158668 408 -   375229 -TTTACCGGACC--ACTGACTGA-CTCACCATGTGCCTACTGTAGCTCTGATGAAGATTTAGAAGTCCGATGCAGGCAAATGGGGCagagcgggtgtgga-aag-aggaagaaagtggggtgcgggagaaaagaaagaaagagagggagagagggag----------------agTTCTG----TGCTGTCAGTGGCTAATCGAGGGAGAGGGACCTACCCG--------GGCGCAGTACCCGTCTCCCGTT-----ACTTgtcttctcattttttggtAGATTCAAACGTGGTATCCAGTTGGATGGTGAATAGTCTGG-GGTTTGGCTAGGCCATCTA----ACGACTAGACCCGATTTGATCGATGCGTGTGAGAGAAATAGCACACTATCTGCAGAGACTCAAACATTTGCGCCTATCATTC---AGAAATTGCGAGGAatatagaga-cgc
i caeJap4.Scaffold17084 C 0 C 0

a score=2049.000000
s ce10.chrX             4222762 39 + 17718866 AGACAGAAGAGCGTATTA-------AGCAAGAGACGTCGTACGGCT
s cb4.chrX              9333840 39 + 21540570 CCGCTGAAGATTGGATTA-------TCGGAGAGACGTCAGACGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1193953 39 -  4500979 TGCAAGAAGACTGAACAG-------TCGGAGAGACATCAGACGCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  159076 39 -   375229 -------agagtgtaTAGCACGTCTCTCGAGAGGTCACCGACGGCT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2481915 36 +  4147112 I

a score=27076.000000
s ce10.chrX             4222801 517 + 17718866  
s cb4.chrX              9333879 533 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1193992 526 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2481951 519 +  4147112  
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold17084  159115 544 -   375229  
i caeJap4.Scaffold17084 C 0 I 3735

a score=860.000000
s ce10.chrX             4223318 4 + 17718866 AGAC
s cb4.chrX              9334412 4 + 21540570 AGGC
i cb4.chrX              C 0 I 878
s caeRem4.Crem_Contig0  1194518 4 -  4500979 AAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2482470 4 +  4147112 AAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I

a score=-1339.000000
s ce10.chrX             4223322 27 + 17718866 GACGACGTTGGATACTGTAAGGAAAAA
s caeRem4.Crem_Contig0  1194522 25 -  4500979 GACAAGG--GGAAGGTATACGGTAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2482474 15 +  4147112 GAAACCG--Agaaaaga----------
i caePb3.Scfld02_0      C 0 I 53
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I

a score=69.000000
s ce10.chrX             4223349 2 + 17718866 CC
s caeRem4.Crem_Contig0  1194547 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 I 283
e caePb3.Scfld02_0      2482489 53 +  4147112 I
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I

a score=0.000000
s ce10.chrX             4223351 112 + 17718866 TCCTTATAGCAAGCGATTGAATGTTGGGATTTAAAATCTGTGGATAATATCTCATTGGGCGAAAATTGGGAAAACTGCAGGAAAAAAGTTAGGCTTTTTTCCAAACCGAAAA
e caePb3.Scfld02_0      2482489  53 +  4147112 I
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I
e caeRem4.Crem_Contig0  1194549 283 -  4500979 I

a score=-2237.000000
s ce10.chrX             4223463 442 + 17718866 TACAAAAATATATGAAAATCAACGTAAAAAAATTATAAAATGTGTAA------------CATTAATATCGTTT----AGTTACTTTCAAAGTGGAAGATTCTTGGAAAGTGGATAATCAATAGAGAGTTTGTAAAAAACTTCTAGTCGAGGTTTTGGTAACTAGTAAGGATCATAAAAATTAATTATTGTCAGTGGGATTTAGTCTAAATACATTTACCAAGTATCATACTAAAAACTCAAACAAAAAAAAGTCAGTCAACGTTTTCGTAAATTGCTAAATTTTTAAGGGATATCATTTGGAGCAAGCATCGGCAATAGAAACTGACtctaaatacagttattacagtccaacatgaccaaatatatatcctaataaaaacttcgaaaatttgagatttttgaaaatttcatattcaagttttggtaaattatcaaacta---tttcaaaaaaaaaatatt
s caePb3.Scfld02_0      2482542 310 +  4147112 tataaaaat---tgaaattcactgAGAGCAATTTGGAAAGTGCCCAAAAGCGGGTTTTTCACGAGTTTCGGttgtgaaattattttt---------tatgctCAAAAGGTCGTT------CTGAGCACACGTATATATCTTTt-gtggaattttctg--------------------aatggATTATTG-------------GTGAAAATTCGATTCCTAAG---------AAGAAAGCAGGAAGAAAGGATTCA-------TTTTCT---GCTGATCAATCTT------------TTTAGATCA--------CCAAGGAATCGGACCC-----------------------------------------------------------ATTCAAga-tcctaaaattttgatgccggattttttctacaaaacgaaactcaattttcacggaaaaaaaatt
i caePb3.Scfld02_0      I 53 I 13
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I
e caeRem4.Crem_Contig0  1194549 283 -  4500979 I

a score=0.000000
s ce10.chrX             4223905 41 + 17718866 tttTTGTTGTTAAAAATCCAACATTGCTACACTGATAAATT
e caePb3.Scfld02_0      2482852 13 +  4147112 I
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I
e caeRem4.Crem_Contig0  1194549 283 -  4500979 I

a score=-1229.000000
s ce10.chrX             4223946 216 + 17718866 GTAATGCTCAAAAAGTTTAAAACTCGTTTGGACAATTTTTGGTCGTTTTTTAAAATTATGCTAGGTGGAAACTGGGGACAATTGCCCCTTATTGACTGTATGTTTGAAAAAAAAAACAATTTTTGGCATTTTTTTAATGGAAATTTCCCCACTACACCTATAACAATTTCATCAAAAACTCTTATCATTTCTAACCAAACCTAGAGAAAAATGCTA
s caePb3.Scfld02_0      2482865 106 +  4147112 GTGAGTCTCA-------TAAATCTCGAACGGACA--TTTTCATCA----GTATAAGGAAGCTAACAGGAAAATGA---------------ATCAACT---TGtctgaaaaggaa--------------------------------------------------------atgaaaaac-----------------------agacaaaaacacTA
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I
e caeRem4.Crem_Contig0  1194549 283 -  4500979 I

a score=8079.000000
s ce10.chrX             4224162 330 + 17718866 AAAACGTTATTTTTGAGACGAGAAAAAAATTTTTAACCTTGCTTC-TGATTTC--CAGTTAGCTGGTTGCTATGCTGA--TAACTTATTTACACATAAT------TCTTGACTTAGTATAGTTAGGA---------------GTTTAGATATACAAAAAC------------------AATGGCTTCTT-AACAACAAAAATAATATTAATTAGACTATATTTTCATTATTTTCATCGTGAAGCAAAAGTTTTTCACCTGCCTCACTATTTTCTAGATTTTTCAAGCCACCCACTTGTCAACAATCGGCGAGAAGGAGAAAAACAAAAAACAATGTTC----ATGG------GGGGTGGCCATAACTGGTTTTTGAATAGGCCCA--
s caeRem4.Crem_Contig0  1194832 299 -  4500979 aaaaatttatttgtgatTGAAGGAAA---------------CGCCTTGATTTTCTTGGTTGGCTGGTTGTTATGCTTGTATAACTTGTTTAATCAGAAG--AAAATCTTG--TTAAAA-AACTTCGAGAAg-----------gtagaactgaaaaataataactcttacgaaaaaaacaatagCTTCTTCGATACGAACAACAACAGTACTTCag-----------------------tgaaat-----gtttttttctttttctctgatat-----tttttctAG---ACAATACGACCACAGTATG---------------TGAAAAACAATGTTC----GTGGCTGGGTGAAGTGGCCATAACTAGTTCTCAGATAGACCCA--
i caeRem4.Crem_Contig0  I 283 C 0
s caePb3.Scfld02_0      2482971 316 +  4147112 --------GGTTCTGATTGAAAGAAA---------------CGCC-TGATTTT-GTGGTTGGCTGGTTGCTACGCTCG--TAATTTGTTTTATCAGAAGTAGAAATCTCA--TTAGAATAGTCTCGACAAGATACCGTAGTTGTACCGCTGTACAATAACAAATAATACTAA------TACGGCTTCATCAATACGAAAAACAACTATAGTTCGGGTATG-----------------ATGAgacccaa-tttttcagtctcCTCTCTGATAT-----TTTTCCTAG-TAAACACACGTCAACAGTATGTG-----------GATGAAAAACAATGTTCAAGAGAGGTGGAGAGGGACGGTCATAACTGGTTC-CAGATAGAGACCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9334416 878 + 21540570 I

a score=22310.000000
s ce10.chrX             4224492 124 + 17718866 ATGATCCAATA--ATGAAATGCAAGCTAATCACATCTAATTATGCTCTACATTGTTGCCCATCAAGAA----ACACCATCTCGGA------------TTAAAACATGGCGCACACGA---AGTGATCATGAATCAGACATCGATC
s cb4.chrX              9335294 139 + 21540570 ATTATCCTATAACACAAAAGGGATGCTAATCATATCTAATTATGCTCGACATTATTGTCCACTCACCGAGATATACAATCCACGG-GA----GAAGATTA-GCAACGACAAGGAGGGGCTGATGATCACGGATCATAAATCGATC
i cb4.chrX              I 878 I 291
s caeRem4.Crem_Contig0  1195131 125 -  4500979 ATAATCCTATA--ATGAAATACATGCTAATCACATCTAATTATGCTCTACATTGTTCTCC------------GTACAATCTAGGA-GAATTGGAGGATTA-AATAGGGCAA----GGGCTGATGATCACGGATCATGAATTGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2483287 130 +  4147112 ----ACCACTA--ATGAAATGTATGTTAATCACATCTAATTATGCTCTACATTGTTTCCTATTGTG------GTCAGATCcaaaatgaagaggaggatTATAACAAGACACGTAGGG---AGTGATCATGGATCACGAATCGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I

a score=431.000000
s ce10.chrX             4224616 54 + 17718866 CACTGA-----ATTAGAAGTTTGACGTAC---GGATGAATGACGAGACTTT-----------TTCAGACAAAG
s caeRem4.Crem_Contig0  1195256 66 -  4500979 CACTGAATTCTAAGGAGTGGTTGACGCAG-------GAGTGATGCCATTTTCAGGGGGTTTTTTGAGATAAGG
i caeRem4.Crem_Contig0  C 0 I 130
s caePb3.Scfld02_0      2483417 46 +  4147112 TACTAA-----AATGAACCGTTGACGTaggaaagaagaatgatgGCATTTT----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335433 291 + 21540570 I

a score=-7231.000000
s ce10.chrX             4224670 524 + 17718866  
s caePb3.Scfld02_0      2483463 209 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335433 291 + 21540570 I
e caeRem4.Crem_Contig0  1195322 130 -  4500979 I

a score=-927.000000
s ce10.chrX             4225194 32 + 17718866 GAAAAGTGCAATACTCCGTTGTTTAAA--GTAAA
s caeRem4.Crem_Contig0  1195452 34 -  4500979 GGAAAGTGCATTCCTTAGTCTGCTCCGTGGGAGA
i caeRem4.Crem_Contig0  I 130 C 0
s caePb3.Scfld02_0      2483672  5 +  4147112 -----------------------------GGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335433 291 + 21540570 I

a score=42670.000000
s ce10.chrX             4225226 183 + 17718866 GTTATCTTATTTGATTGTTAGTTCCTTT--TCCTCTTTGTTCAACCAAAGTCAGG---CGTGTCTCGAGACAGATAGGAACGCGACGACCCCGGCGGGGGACTCTACCAAATA-AAAGTAAAAGAGTCAAT-AAAATAGAATGGAGGG-----AAGTTAATGAAAAGGGAAAATGAAAGCTGGGATGAGAGGAAG
s cb4.chrX              9335724 176 + 21540570 gTTATCTTATTTGATTGGTGGTACCGTTTCCCCTCTTTGTTCAGCAAAAGTCACTGCCAGAGTCTC--GACAGATACGAACGCAAAGG--TCGGCGGCGGCATCTACCAAATAGAAAGGAGAAGAgtcaataaaaatgaaat-----------tgattaATGAAAACGGAATGTGG----taggaagagagaaag
i cb4.chrX              I 291 I 1790
s caeRem4.Crem_Contig0  1195486 163 -  4500979 CTTATCTTATTTGATTGGTGGTACCTTT---CTTCTTTGTTCAGTAAAGTTCACTGCCCGCGTCTC--GACAGATAGGAAC------------GCGGCGGCATCTACCAAATA-AAAGTAAAAGAgtcaat-aaaatgaaatagaagatTGGATGGTTGATGAAATGGGAAtgtg----------aatgaga---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2483677 170 +  4147112 GTTATCTTATTTGATTGGTGGTACCCCT-ACCCTCTTTGTTCAGTGAAAGTCACTGCCCCAGTCTC--GACAGATAGGAACGCGAAGG-----TCGGCGGCATCAGCCAAATA-AAAGTAAAAGAGTCAAT-AAAATGGAATGGAAGA-----TGGTTAATGA------AATGTGA----TGGGAAACGAAGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I

a score=2997.000000
s ce10.chrX             4225409 97 + 17718866 CAACGATCAGAGAAGCCTCTCGGCGTAAATATTACTGAAAACAGCCCAAAATCAATGAATGT-----GATAATCC---GGCGGGGAGCACTCGAGAAAATGAAAA
s caeRem4.Crem_Contig0  1195649 75 -  4500979 ----------agaaacctctc---gaaa---------aaaataactgaaagtCGACGCATGA------ATAATCCTTaaa--aaaaGCACtcgggaaaatgaaaa
i caeRem4.Crem_Contig0  C 0 I 1792
s caePb3.Scfld02_0      2483847 89 +  4147112 -------AGATGAAGCCTCTCAATGGAA---------AACAGATATTTCAATCGATGTATGATATTATATAATCCAGAGACGAATAACActcaagaatccaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I

a score=1040.000000
s ce10.chrX             4225506 102 + 17718866 ATGTGACTGAAAACCTTGGTATGAAAAACGGG---GGAAACACAATTTTTGAGAAAGTGAAATCAATTTAATGCCAAGAAACTCAAAATGTACCTA--AAAAAACTA
s caePb3.Scfld02_0      2483936 100 +  4147112 a----actggattttgtaaaatgaaaaacgggTCAACAAAGATCACTTTTGATAAAATAGGA--AATCTCA-GTCAGCAACTTTGAACTGGAGGTACCAAAAAACTA
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=0.000000
s ce10.chrX             4225608 1574 + 17718866  
e caePb3.Scfld02_0      2484036   73 +  4147112 I
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=4355.000000
s ce10.chrX             4227182 160 + 17718866 TTCCAAAACCAGATTT-CTTGTTATCCCACACGTCATAAGGCCATGAAAAACATCTGTCTTCACTGACATAAAACCTACGTTTTTTTTTTTCAATCTGAAACAAAAGACAGAGACATAAATGTCA-GTTGCATCAAGGGTGCAAGGGCAAATAGTACAAAGT
s caePb3.Scfld02_0      2484109 144 +  4147112 tttgaaaactagatTTACGTGATTTTACTGGCGTCATAAGACTACTGAAAGCAGCTGTTTCAACTAACATCAAACCCACG----TCGTTTACAATCTGAAAC----GGCTGCGATGCA---GTCATGTTGCATTG-------AAGGGCAAACAGTACAATGT
i caePb3.Scfld02_0      I 73 I 1689
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=0.000000
s ce10.chrX             4227342 924 + 17718866  
e caePb3.Scfld02_0      2484253 1689 +  4147112 I
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=274.000000
s ce10.chrX             4228266 18 + 17718866 TACATGATTCCTAATTCA
s caePb3.Scfld02_0      2485942 17 +  4147112 TATACGATGGCTCATTC-
i caePb3.Scfld02_0      I 1689 C 0
e caeJap4.Scaffold17084  159659 3735 -   375229 I
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=-1534.000000
s ce10.chrX             4228284 13 + 17718866 -----AAAATAATATAGG
s caePb3.Scfld02_0      2485959  8 +  4147112 ---------TAATAC-GG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  163394 13 -   375229 aataaaaaataag-----
i caeJap4.Scaffold17084 I 3735 C 0
e cb4.chrX              9335900 1790 + 21540570 I
e caeRem4.Crem_Contig0  1195724 1792 -  4500979 I

a score=14316.000000
s ce10.chrX             4228297 73 + 17718866 TTTTTCTAGAGTTTT-----------TTAAA----AACCATTTTGACTCGGCCACCAGATGAGAATATTTG--TTTTTCATCGGATCAAT
s caeRem4.Crem_Contig0  1197516 78 -  4500979 TTCTTCTATGGTTTT-----------AGATAACTTAACCAGCTTGACTCAGTCGTCAGATGAAGATATTCG-TTATTTCATCGGATCGAT
i caeRem4.Crem_Contig0  I 1792 C 0
s caePb3.Scfld02_0      2485967 69 +  4147112 ----------TTTTC-----------GGATAACTTAACCAGCATGACTCGGCCGTCTGATGAggatattcgtttttttcatcgGATCGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  163407 87 -   375229 tttttttgtggtttttgtgCCAAAAAGGGAAACTACACCAGCATGGCTTGACTACCAGACGA-GACATTCG--TTTTTAATTGGATCTTT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9335900 1790 + 21540570 I

a score=24059.000000
s ce10.chrX             4228370 295 + 17718866 ACACTCAGAATGAGATCACAGAAATTGCACTAACAGGGAGAGA-TTCGTGGATGAGAGT---TTAAAATAAATGAAAATTGGGAAAA-TAAAATGAAAAATT-GTAGAT-------GAGCCAAAAATATAAACA------------GTCGTTGAGA--CTTCAATTAAACGTGCAACATCTGGCGATTTCCGGCTTCTTGGTGTCGGCGACGGAAATCGTGTCCGCCATTTCACCTCCGGGAACAAAACCGTATTTCAACTTGAGCATTCGTCTG-------AACGAA------------------------TCACGTTTAATATTTG-----------AAAGATTTTT--------CTGCTT-TTTTTGCAA----------
s cb4.chrX              9337690 305 + 21540570 ATAATCAGAATGAGATCACAGATGT-----Taaaagggaagagttttgagtttgaaaggaaatggaaaagaatgagaaaggaggagatgaaaagaaaaaa---ttcgtt-------taGTAAGTCTTTCCATGA----TTTCGTTTAGTGATGAGA--AATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCAtgcgtctg-------aaaat--------tttct------------tcaaatttagtttttc-----------aaaggttttt--------cagttc-ctgtttcaa----------
i cb4.chrX              I 1790 I 106
s caeRem4.Crem_Contig0  1197594 339 -  4500979 --ACTTAGAATGAGATCACAGAAATTGCactaaaagagaaaaa-aaagagaaaaaaggaaaataggaacataagaaaaaaaagaaga-gaaaataatgaaggCTTAGAA-------TAGCCAGAGTACAAATGAATTggtttgtttaaaaattgga--tcTTAGTTGAAATTGCAGCATCTGCTGAGTTCTGCCGTCTTCGGCTCGTTAATTGAAATTGTGTCAGCCATCTCTCCTCCCGGAACGAAACCGTATTTCATCTTGATCATTCTCCTGTAACAATAAGATCGCATGCATTTCTA---------tgtctatttttgtttttatcgCACGTCggagaatttttt--------caat----tatttgaa----------
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2486036 313 +  4147112 --ACTTAGAATGAGATCACAGGGGTTGCACTAACAGGATGGAG-----AGAAGAATTATGAATAGGAATG-ATGATTTTGTATAGTA-AGGATTAATGAAG--TTCG---------TTGTTCGGATTCGAAAGA------------TAAGATGAAA--T-TTAGTTGAAAGTGCAGCACTTGGCGATCTCTGGCTTCTTGGAGTCAGCGATTGAGATGGTATCAGCCATCTCACCTCCTGGGACAAAACCGTACTTCAGTTTGAGCATTCGCCTG-------AAAAGAAACTG--TGCCTGAGAGCTGATTGTAGAAGTGTTCTATTTTCCCACAttg-ag-----ttt--------taattt--tttttgaa----------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  163494 335 -   375229 ---TCTTCAACGAGATCACAGAATTTGCACTAGCAATAGAATG-ATTAAGTacaacaagaaaaagaaa--------aatgatgacaa-gAATACAGTAAAGCTTTGGATGAAAAGAAAGTCGTTGCTATGAAAC------------ATAGTTGAGCGTTTTCAATTATAAGTGCAGCAGCGGGAGACATCTGGTTTTTTCGAATCCGCTATTGAAATAGTGTCCGCCATTTCACCACCCGGAACGAAACCGTACTTTAGTTTGAGCATACGCCTG---CaaaaaaaGAATCag-------------------tcagttttttttgaaatgttagaaaa-aaaGGTTCTCATAAGTGGCAGTTTGCCATTTGCGCGCCACGCCA
i caeJap4.Scaffold17084 C 0 C 0

a score=6124.000000
s ce10.chrX             4228665 87 + 17718866 TGTCGAAATGTTTGCTTTTAATGGTTTTTTTTCAGTCGTTTTATATTTGCCATTCTACCATTGGTGCCTATCAA-----TGGGAGACACAAG
s caeRem4.Crem_Contig0  1197937 82 -  4500979 atCCGATTTGCTTGTTAACAATAGTACTTATT---TCATTCTCGATTTGTCACTGCACTGACGGTACCGTTCTACCCcttgaaaa-------
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      2486350 76 +  4147112 aggcaAAATGTTTGTTCATGGcggttttttga---acact-tctATTTGCCA-------AACCGTGCCTCTCTA-----TGATAggtacaaa
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  163829 84 -   375229 CGCCGATTTGTTTGTCATTGATGGTTTTTCCC--ATAGTTTTCTATTTGCCGTTCCACTAACGGTGCCTATCTT-----TGACAGGTACGG-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9337995 106 + 21540570 I

a score=52326.000000
s ce10.chrX             4228752 94 + 17718866 GGAACTTACTCTGCCAATCCGAGGAATGCTCTATCTACATTGAACCCAGTTTTGGCGCTCGTCTCCATGAATGGAATTTGATAGGCCTGAAATA
s cb4.chrX              9338101 94 + 21540570 GACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATA
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig0  1198019 92 -  4500979 --aactcactctgcAAGTCCAAGGAACGCTCTGTCAACGTTATGTCCAGTTTTGGCGCTGGTCTCCATGAATGGAATTGCATATGCCTGAAATA
i caeRem4.Crem_Contig0  C 0 I 1242
s caePb3.Scfld02_0      2486426 94 +  4147112 aaaacttactctgCCAATCCGAGGAACGCGCGATCGACATTCTGTCCCGTTTTGGCACTGGTCTCCATGAATGGAATTGAGTACGCCTGTAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  163913 92 -   375229 TGAACTTACTCTGCGAGTCCGTGAAACGCTCTATCCACGTTGTACCCAGTCTTCGCACTCGTTTCCATGAAAGGGATACTGTAGgcctgaaa--
i caeJap4.Scaffold17084 C 0 C 0

a score=-68254.000000
s ce10.chrX             4228846 368 + 17718866  
s cb4.chrX              9338195 305 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2486520 600 +  4147112  
i caePb3.Scfld02_0      C 0 I 71
s caeJap4.Scaffold17084  164005 360 -   375229  
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1198111 1242 -  4500979 I

a score=-8260.000000
s ce10.chrX             4229214  83 + 17718866 --GTTT----------------------------------------------AATAATG----------------GTATTTATCAGTTATTCATTTT-----TGTATATTCTAATATACAACACCGTTTTGGAAACAATTGCCAAAC----TTGCC
s cb4.chrX              9338500 101 + 21540570 --ACATCGCA------------------------AAAGATG----------AAATAAAG----------------GAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGT---TAactttttatagaaaaaaatagttgagtatttttttt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  164365 150 -   375229 GGATTTAGCACGTACATGGCACTATTTTGGCTGCAAGAATGTTAGTCGAGTGAATAACAAGCTCTTCCTGTAGACAGATttggaatttatttattat-----cataTTTTTAAGCACAATGCTCACCTATCAAGAACATTATTACAAATTATACC-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2487120  71 +  4147112 I
e caeRem4.Crem_Contig0  1198111 1242 -  4500979 I

a score=-22969.000000
s ce10.chrX             4229297 142 + 17718866 AGTAATCCGATTTTTGAACTTTTTCTTACAAAGC--------------------TTAATTA--ATTTCAGCCGAACT-------------------------------------------------------TTGCGCCA----------------ACTTAAA----CAAAAAAATCT----------CTCGTTAATTGTAG-----------AAACGTTCGCTT----------------------TCGAAATTCAA--------TTAATTTTTTTG-------------------ACTTCCAATTTT-
s cb4.chrX              9338601 188 + 21540570 aataatttgatCCTAAAAATCCCA-TTATGAA----------------------TTTCCTA-ACTTTCAAC---ATT-----------------------ATGAAACCCCAAATTAATTTCAAACtaaggaattttttta----------------aatcaaaggtcacattcaattttcaatttcgaattgTTCATTCTACT---------TCAGTGTTCCcttc----------------tttccaaaaaatccaa--------ttaagctttttt----------------------ttcaaattt-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2487191 168 +  4147112 agcactacaattacagaaattatt-gtacaaagc--------------------cttactacgcctttaac---act-------------------------------------------------------tttttgtt----------------agaaaaa----ccCTTCAATTT---ATCTAGAATCGGTATCTTGAGT---------TCGATGTTCCCgg----------------------agaaaattcaa--------ttaagctttttttgaactacgTCTCTTAGATGCATGCAATCTT-
i caePb3.Scfld02_0      I 71 I 58
s caeJap4.Scaffold17084  164515 267 -   375229 AGTGTTTGAAgctataaatatttt-tcaaaaatcgtcCGAACCCTTGACCATTTGCTCCTACTTTTTCTGCC--ACTCCTTATTTTTAGAAGcagttttcatgaaattccTGTATGCTTTCA----------TTTTCCTACAATCTGGACTATGTCAGTCAAA------AAGCAATTT----------CCTGTTACCCGtcccaaaaatgcaaaaacctTCTTGTTCCACCGATTTatagcatttaaaaaaaatctaaaataggATTCGATTTATTTT--------------TGGGCAACTACTACTATT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1198111 1242 -  4500979 I

a score=-3918.000000
s ce10.chrX             4229439 42 + 17718866 A---------------------------------CTCATTTTCCTTCGTTGCACCGAGTATGTTTTAAACTCTGC
s cb4.chrX              9338789 71 + 21540570 agaagaGAATGCAATGGTTTGACTCATCTTGACCctaatttccgttttttttcccaataatGGCTT----TGTGC
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold17084  164782 44 -   375229 -------------------------ATCCTGC--CCAATTATTTTCTCCTCTAC--AGCGCGTCTTGCACATT--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2487359 58 +  4147112 I
e caeRem4.Crem_Contig0  1198111 1242 -  4500979 I

a score=-271.000000
s ce10.chrX             4229481 7 + 17718866 TAAGAAT
s cb4.chrX              9338861 6 + 21540570 AGCGAA-
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0      2487417 7 +  4147112 TGTGAAC
i caePb3.Scfld02_0      I 58 C 0
s caeJap4.Scaffold17084  164826 5 -   375229 --AGAAC
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1198111 1242 -  4500979 I

a score=246082.000000
s ce10.chrX             4229488 857 + 17718866  
s cb4.chrX              9338867 887 + 21540570  
i cb4.chrX              C 0 I 185
s caeRem4.Crem_Contig0  1199353 853 -  4500979  
i caeRem4.Crem_Contig0  I 1242 C 0
s caePb3.Scfld02_0      2487424 843 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  164831 875 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=91.000000
s ce10.chrX             4230345 1 + 17718866 A
s caeJap4.Scaffold17084  165706 1 -   375229 a
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2488267 0 +  4147112 C
e cb4.chrX              9339754 185 + 21540570 I
e caeRem4.Crem_Contig0  1200206 0 -  4500979 C

a score=-8560.000000
s ce10.chrX             4230346 138 + 17718866 ATAAAAGAGGTTATACAACAAAAGTTTCTCAAGTGAATTTTACTTTCCC-----ATATATAAGA----------CATTTTTTCAAATTTTATACTGTCTATTCGCGGGAACATGACATTGTGTCCGACCAATTTGTTTATGATACCTTCTGAA----
s caeRem4.Crem_Contig0  1200206  80 -  4500979 ------------GTACA---------TTTCATTTGGGTT---------------TCAGATCAGA----------AAAGGGTTCAGACTTCAT---------------GAGCAGAA-----------ATAAA--AAGATCAGACattgttcaaaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2488267 119 +  4147112 --------------------------gttcatGAGAATTAAAGTGTGACTAGAATCAGCTCAAATCTCTGCGATCAATGTTTTATAGTTTATTC-------Tcacagaaactgaaaattgag---gacaaa--aatttgaaacagtaacatgAAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  165707   0 -   375229 C
e cb4.chrX              9339754 185 + 21540570 I

a score=-26291.000000
s ce10.chrX             4230484 173 + 17718866 TGTTTCTATGCAGATTAAAATTTGA----------AATTTCAGAAATTCAATTTTCTTT-------ATGTAATGAAAAATTTGATAAA--------------------------------------ATTTGAACGCGTATCATAATTGAGATCGTGCCAAGACCTATTCGGGAAAATAGTGTGTGCCTTTAAACTGGATATGTCAAAGTTTTGCAAA-----------------ATTTTGATAAT
s cb4.chrX              9339939 127 + 21540570 TGTTTAAAAGCATCCTAAAA--CAACCCGACAATCAGTT-----ACTTTAATCTTTTTG---------GGTacaaagaaatcaaaacat------------------cTAAT--------------AATCTAAG-------------------AT-------TTTGTTCAAAA----------------------CACtgtctcgaaattttgagag----------------------aatagT
i cb4.chrX              I 185 C 0
s caeRem4.Crem_Contig0  1200286  81 -  4500979 -----------------------------------agtt-----aacACAGAACTTTTG---------CAAGTTCAGAATGTAATACG--------------------------------------ATTCCCAGGGG---------------TGT-------TTTAGTCAAA----------------------------TCTC-AGATCTTGCAA--------------------------AAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2488386 197 +  4147112 --------Tgcagataaaaa--tga----------aatt-----tgattatAATTTTTGTATAGTAAATAAATCCATAAGATAATATGGAATCATCATTCATAAAAACTAACTATCGCCGCTTGCGATTCATAGCTGAA--AAGCTTGAAACCGT-------CTAATTCATAA---------GTGCCT-----ATTAGTTTCTagctatttttccaataagctaaagtttcgtttttttcataat
i caePb3.Scfld02_0      C 0 I 200
e caeJap4.Scaffold17084  165707   0 -   375229 C

a score=-8590.000000
s ce10.chrX             4230657 159 + 17718866 GCAGACTTTAATTTTC----------------AAAGAAAGATATAAATAAT------TATATTTAGCACATCAAAGTGAGAAATTATTCAGAATTTCCAGAATTTGAATTTTTTTAAAAA-------------------------TATTGTTGAA-----AAACGTAGAC-----------CTTTTTTGAATTTTTACTTTATCACAAAATGAATCATTGAA
s cb4.chrX              9340066 205 + 21540570 GTGAAAccgacttttgaaatttccagttaCGTGAAGAAAGTCATAATTTATGTCAGTCATTTTTAATGC------GTGAGAAATTTGT---AATCTTCTTATTCTCAAGGTCTTTGAGATTCTAGAAAGGACAATCAGACTTCCTTGTccccgaaaattcaaacttgggTGATGAAAAGtgcatttccaaatttttaat--------gaataaGTTGGAGAA
i cb4.chrX              C 0 I 178
s caeRem4.Crem_Contig0  1200367 122 -  4500979 GCACACCTCATGCTTT--ACTTCCCTTCTCACGCTATAAatcttaactttt--------ttttcga------------aaaattctgt---AGTCCCGATATTTTTGA----TTCGAGAT---------------------------------AAAAGTCAAGAGTAGAC-------------CTTACGAAT-------------------------GACAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2488583 200 +  4147112 I
e caeJap4.Scaffold17084  165707   0 -   375229 C

a score=-776.000000
s ce10.chrX             4230816 51 + 17718866 ACGAA-ATCAGATTAAAAATTAATAGAGGTAAACCCGTTTTTCCAACttaaa
s caeRem4.Crem_Contig0  1200489 48 -  4500979 GGGAATATCACTCCAGACATGGAAAGATTT----CTGAGCTTCTGAATATCG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2488583 200 +  4147112 I
e caeJap4.Scaffold17084  165707  0 -   375229 C
e cb4.chrX              9340271 178 + 21540570 I

a score=432.000000
s ce10.chrX             4230867 16 + 17718866 -aaaattatttaaaagt
s caeRem4.Crem_Contig0  1200537 16 -  4500979 -AGTACTACTCTAAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2488783 17 +  4147112 GAATTTTGTTGTTAGTT
i caePb3.Scfld02_0      I 200 C 0
e caeJap4.Scaffold17084  165707  0 -   375229 C
e cb4.chrX              9340271 178 + 21540570 I

a score=-17159.000000
s ce10.chrX             4230883 105 + 17718866 tttt----------------tttCAAA----TTTCAGC-----TCTAACTATTCCAAACCTCAACAAAATCT--GATTAAAAATAGAAT------ATCAAAGTTCCACCCATTTTT-----------TACTT------CCAAACATTTTACCGGT
s caeRem4.Crem_Contig0  1200553 126 -  4500979 CTCTAAAGT--------GCACTTGAAATCATCCTGTACTTCTACATAACTATTGTGATTCTGAGTTAAAGTT--GAGTTAAAGTACATGTCAATAGCTATTAATGGACTCAATT-------------GACgt------caaaaagttagaaaagC
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      2488800 131 +  4147112 TTTTGAC-----------CCCTTCACA----CTTGTAC-----CATGATAAATGGTGTTTTATCTGACACTTAGGATTTGAAG---ACG-CTATGATCAGTATTGTACCCCTTTTTGGTTGAGTACCGATGTActttctgagaattttgtGTAAT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  165707 111 -   375229 -tttaatttaattgttagtttctaaaaata-attgtAC---------ACTTCTGCAAATC--ACTACAATCA--GAATAAAAACGTAAA---------------GTACACTTTT--------------ACTTCCAGTCTAGAGCACTTTAGCGGC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9340271 178 + 21540570 I

a score=44694.000000
s ce10.chrX             4230988 215 + 17718866 TTCTAGT----------AATCATT-----------TTTGATAGAGTG---CA---CTGAC---------TTCAGAA----------------------------------AAATA-----------------------GTCTAGAATTAACT--------------------AAAAAAGCTATTGACGTGTTACACTTACTCTGTAATCAATTCCAACTGTTGAAATGAAATTGTTATTTAGAAAAGCTCCATCTTTGTATCGAATCAGAAGGCACGTTTTTCCAGTGCAGCTGTCACCAAGTAGCATAACCTTTA-------------------AAAACATAAACT
s cb4.chrX              9340449 212 + 21540570 -----------------TATCA--------GTAA-TCTAATAAGAGAACccattctaaat---------tttaaaa----------------------------------aattgtg---------------------atcTAGATCATAGCTC------------------CGAAG-----------------ACTTACCCGATAGTCGATTCCGACAGTCGAGATGAAGTTGTTGTTGAGAAAGGCACCATCCTTGTAGCGGATCAAGAGACACGTTTTTCCGGTGCAACTGTCACCGAGAatcatgacctgaa----------aatttgtgaataaCAGTAATT
i cb4.chrX              I 178 I 1
s caeRem4.Crem_Contig0  1200685 224 -  4500979 -----------------TATCATGAAGGCTATAA-TTTGACAAGACAAATCA---CAAAT---------TCTAGAAT------------------------------TCCAGTTGTG---------------------ACGCAAAATATATT------------------------------------------ACTCACTCTGTAATCAATTCCCACAGTAGAAATAAAGTTGTTGTTGAGGAAAGCACCATCTTTGTAACGAATCAAGAGACAAGTCTTACCGGTGCAACTGTCGCCAAGAAGCATGACCTGGAATACGAGAACAGtataagaagaaaaggaaac
i caeRem4.Crem_Contig0  I 6 I 3
s caePb3.Scfld02_0      2488938 312 +  4147112 TTCTAATACTTAAAGTGCATCACCAACCCtatgattttgatgaattgactct---aaaat---------tttgagacaGAACCTGACAACACACCATAATTGACGAGCAGAAGTGTGACATGcactttaagaaaaaaaacccaaattcaatttcatttgagTAAGCCAGTCTAGAAAAATAACAGACAC----CACTCACTCTGTAATCAATTCCCACAGTGGAGATAAAGTTGTTGTTGAGGAAGGCTCCATCCTTGTAGCGAATCAAGAGACAAGTCTTTCCAGTGCAACTGTCACCGAGAAGCATGACCTGGA-------------------ATATGAGAAATT
i caePb3.Scfld02_0      I 7 I 29
s caeJap4.Scaffold17084  165818 200 -   375229 ---------------------------------------AAAAATTAGCTTA---CATATTTCGTTTTGTTCAaga--------------------------------------------------------------atacaaattttttt--------------------caaaaatcagaaaacgtG----GCTCACTCTGTAATCTATTCCAACTGTTGAGATGAAATTATTATTGAGGAAAGCTCCATCTTTGTATCGTATAAGAAGGCACGTTTTACCAGTGCAACTATCACCAAGGAGCATCAcctgca-------------------acaacaaaaaaa
i caeJap4.Scaffold17084 C 0 C 0

a score=-4802.000000
s ce10.chrX             4231203 35 + 17718866 ----------------------TTATTAACCAGCTTGAGTGTGATTTCTTTTAATCT
s cb4.chrX              9340662 23 + 21540570 ----------------------TTATAATTTAACTTGA------------CCAATAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1200912 14 -  4500979 ----------------------ttttaaaacaactt---------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeJap4.Scaffold17084  166018 49 -   375229 caatggaTTGCACAAGGGCAAATTTTTGCATAGACtgcattt--------ttaattt
i caeJap4.Scaffold17084 C 0 I 3
e caePb3.Scfld02_0      2489250 29 +  4147112 I

a score=61389.000000
s ce10.chrX             4231238 334 + 17718866 ATCTAGCAAAAA--------ACT-ACCTTGAATGTAGTGA------------GCTCAGCCATATCTAAGTCTAGCATCTCGGACCTATGTTTGCTTTTTAACGA---AGCATGTTCGTTTGTTTGATATGGCATTGTT------GTGAGCGCAGA------------AAAAACTT---------AAAATGAG-AATGATAGTGCACGTAAAGGGCGGAGC--------------GATAAAAAGATGAATGGAAGTAGAAGGGGGGCTCAGAACAATGAGGACA--GACGTTGAGAGCGCGGCAATCTGAGGA---------------GCCGCCC-CAAATTGGAGAGCAAA-AGAGACTGGCGGGA---GCTGAGGAAAG----CGAA----TCGAGTCGTCGTCTTACACCGAGAAT-AAAAAATAACTT
s cb4.chrX              9340685 355 + 21540570 AACTAGACTAAC--------ATTCACCTTGACGATGATTTGCTCTTTTCCAACATCCATATCATCATCATGGAGCAAATCGGAACGATTCCTATTT------------------------------TTTGGCATAGTTCAGAGCGTAATCGGAGA--TTTTGACTCTAACAAATTCCGAAATAAAGAATGAG---ATATAGTGCACGTAAGGGGCGGGGCctgaaatggaagaagaaaaagga------gaaggcgAAAGA-------AGAACAATGTGAGCA--GACGCTGAGAGTGGAGCAATCTGAGGA---------------GCCGCCCTTAaattagagag--aa-aaagaatgaagGGACCCCCCGACAGAGTATTCCGAAAATGAAGGGTAGTCGCCTTTCAcggagaatgaaaaaataactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1200926 324 -  4500979 -------tttaC--------ACT-ACCTTGATTGTGATTT------------TATCCGAAACTTCTAGATCCAACATTTCCGACCGGTGCTTACTTTTCACCGA------ATGCTCGTCGGTTTGATTTGGCATGGTT-GGAATGGAACTGAACA---CTTGTTTCAAACaactt--------gaaaatgag-aaagataGTGCACGTAAAGGGCGGAGC--------------GATAACGGA------TGAGG----AGG-------AGAACAATGAGAGCA--GACGTTGAAAGAGGAGCAATCTGAGGA---------------GCCGCCC-Taaattggaaag--aa-agagACTGGCGGGA---GCCGACGAAGCTTTTCAAA----CCGAGTAGTCGCTTTTCACCGcgaat-aaaaaataactt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2489279 326 +  4147112 aagtatCATTAG--------ATT-ACCTTGGCTGTGATTG------------TCTCAGCCATATCAAGGTCAAGTTTTTCTGACCGATGTTTACTTTTCAACGA---GGTATATTCG---------TCGGCCATGGTTGGAATCGTAATTGGAGA---CTTGActcgaaaaactt---------gaaatgag-aaagataGTGCACGTTAAGGGCGGGGC--------------GATAATGGG---------------AGG-------AGAACAATGAGAAGAGGGACGTTGAGAGCGGAGCAATCTGAGGA---------------GCCGCCC-CAAATTGGAAAG--AATAGAGACTGGCGGGACCCGCCGGCGAGGT-TTTCAAA----CCAAGTAGTCGCCTTTCCCCgtggaataaaaaagaactt
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold17084  166070 352 -   375229 aTTTAGCGGCAGCGATCTTTGAT-ACCTTGAATGTGACGA------------CAGATGAGATGTCTAGATCTAGCATTTCGGCCCGATGCTTGTTTTTTAAAGAAGCAGCACTGTCGTCGGCTTGGTACGGCATGCTTTTGCTTCAAAATGGAACCACTTTGACT----Agactt-----gaaaaaaatgaaaaaagataGTGcagaaaaagggcggagc--------------aACCAATAT------CTGGGATT-CTG-------AGAACAATGAACGGA--AAGGAC-AGAGAAAAGCAATCTGAGGAGCTGAGCCGCGCCGCGCCGCcc-caaattgcagaa--aa-agaGGCCT-TGGGATTTTAAGACGACA-----CGAG----ACGAGACGGCGtctt------------aaaaaatgattt
i caeJap4.Scaffold17084 I 3 I 372

a score=-209.000000
s ce10.chrX             4231572 4 + 17718866 GGGA--
s cb4.chrX              9341040 4 + 21540570 tggA--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1201250 4 -  4500979 gGAA--
i caeRem4.Crem_Contig0  C 0 I 251
s caePb3.Scfld02_0      2489605 6 +  4147112 gGAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  166422 372 -   375229 I

a score=-880.000000
s ce10.chrX             4231576 32 + 17718866 --CGTTATTTTAGGACTAGAAATGGAAATGTAGG-
s cb4.chrX              9341045 35 + 21540570 AATTATTTGTCCtcgacaaaaaaagaaagagtaaA
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0      2489611 32 +  4147112 --CTTTTTGTCGGCAGCGGAGATCGAGATGCCGG-
i caePb3.Scfld02_0      C 0 I 219
e caeJap4.Scaffold17084  166422 372 -   375229 I
e caeRem4.Crem_Contig0  1201254 251 -  4500979 I

a score=182.000000
s ce10.chrX             4231608 2 + 17718866 AT
s cb4.chrX              9341080 2 + 21540570 AT
i cb4.chrX              C 0 I 173
e caePb3.Scfld02_0      2489643 219 +  4147112 I
e caeJap4.Scaffold17084  166422 372 -   375229 I
e caeRem4.Crem_Contig0  1201254 251 -  4500979 I

a score=0.000000
s ce10.chrX             4231610 947 + 17718866  
e caePb3.Scfld02_0      2489643 219 +  4147112 I
e caeJap4.Scaffold17084  166422 372 -   375229 I
e cb4.chrX              9341082 173 + 21540570 I
e caeRem4.Crem_Contig0  1201254 251 -  4500979 I

a score=191.000000
s ce10.chrX             4232557 2 + 17718866 CA
s caeRem4.Crem_Contig0  1201505 2 -  4500979 cA
i caeRem4.Crem_Contig0  I 251 C 0
e caePb3.Scfld02_0      2489643 219 +  4147112 I
e caeJap4.Scaffold17084  166422 372 -   375229 I
e cb4.chrX              9341082 173 + 21540570 I

a score=1071.000000
s ce10.chrX             4232559 29 + 17718866 AGGTTTACCACACGAATTCGGCGAAAAGA------
s caeRem4.Crem_Contig0  1201507 30 -  4500979 ACGATtaccaaaaaa-----atgagaagatgaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2489862 35 +  4147112 aagtttaccaaaaaatactgagaaaaaaacgaaga
i caePb3.Scfld02_0      I 219 C 0
e caeJap4.Scaffold17084  166422 372 -   375229 I
e cb4.chrX              9341082 173 + 21540570 I

a score=17693.000000
s ce10.chrX             4232588 66 + 17718866 GGAAAACTGAAGCCAACTTAGAGTCAGG--GTAGAGGGTGAGAAAA--CGGGAAAGGCTAATGAGCAATA
s cb4.chrX              9341255 58 + 21540570 ggaaaaatgaaaccaaCTT-GAGTTAGA--AAATCGAGTGGGAAAC---------GACTAATGAGCAATA
i cb4.chrX              I 173 C 0
s caeRem4.Crem_Contig0  1201537 67 -  4500979 agaaaactgaagCCAACTC-AAATGAGA--ATATCGggtgagaaatgagaaaaaagactAATGAGCAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2489897 67 +  4147112 agaaaactgaaaccaactc-gagtaaaaagatatatggtgagaaaa--atagaaagactAATGAGCAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  166422 372 -   375229 I

a score=18516.000000
s ce10.chrX             4232654 201 + 17718866 TGAGATTATC-CAAAAGTATTCGA--CCAAAAAATTAAGTTTTGTTAAAAAAGGCCACCTAAAGGAAAAGAAAAGAGCAACGTAGTATGAAAGAGAGAGAGAC------AGGTGAGTAAAACATCTGGA-------CGTTG-----AAATAAATACGTTGTTTTTCCTTCC----ACGGGATACAA-TTTGCCTAGTAATTGAACTCTTTCTTTTTTCTTTGTTCTT
s cb4.chrX              9341313 139 + 21540570 TGAGATTATCTCACAAGT----------------CAAACTTTT-----------CCATCAAC------GGAGA----------------AAAAACTCCGTGA----------TTTATAGAACAGGTGGA-------GGAGGTAAATAACTAAATGGATTGTTTT--CATCCGCTCgttgaataaaattttgttggGTAATTGAAC--------------------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1201604 149 -  4500979 TGAGattatc-caaaatt----------------caaagtttgG----GACACATGATCAAA------AGAGACGT-------------AGAAACTGAAAGAC------AGGTGAGTAAAACATCTGGA-------GGTAG-----AAATAAATAGATTGTTTT--CTTCCG---ACGGGATACAA-TTTGCCTAGTAATtgaactct--------------ttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2489964 148 +  4147112 TGAGATTATC-CAGAAGT----------------TAAACTTCT-----------CAATCTACAAACATAGAGACGA-------------AGGGTATAAAAGAC------AGGTGAGTAAAACATCTGGA-------GGTGG-----AAGTAAATAGATTGTTTT--CTTCCG---ACGGGATACAA-ATTGCCAAGTAATTGAACTCT--------------TTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  166794 189 -   375229 TGAGAGCAAC-GGAAAGTGTCAGAGTTTAGTCAAAAAGGTCTTGGGAAAAAAGTCCacgcaa------cgaaa----------------aaaaaatccaaggtaaaataaaataaaataaacatcTGAAGCGGCTGGTTCG-----AAATAA---GATTGTTTT--CTTCCG---AC-GGATACAA-TTTGCCGTGTAATTGAACTCGCTCTCTGCGTGTAGTTCTT
i caeJap4.Scaffold17084 I 372 I 2708

a score=25810.000000
s ce10.chrX             4232855 108 + 17718866 GTTTGAGTGCAGCAGTCTGCATAGCCATGAAATTGAGCTTGCT---TAAAAGTGGCTTG-CTTCATAAAACTGCTGCTCTGTTTC-GGGTGAACCGTTAAAACGTCATTTTGT
s cb4.chrX              9341452  99 + 21540570 GTTTGAGTG----------CACCAACTCGAAATGGAGCTTTTTCGGGTGTAGTGGCTCGTTTTTATTGAA---CTACTTTGGTTG-GAGTGAACCGTCAAAACGTCATTTTGT
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1201753 103 -  4500979 gtttgagtg---CGGTCTACACAGACATGAAATTGAGCTTGCT---ATAAAGTGGTTCG-CTTCATAAAA---CTACTCCGTTTTCGAGTGAACCGTTAAAACGTCATCTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2490112 102 +  4147112 GGGTGAGTG---CGATCTACACACCCATGAAATTGAGCTTGCC---ATAAAGTGGCTTG-CTTCATAAAa---ctctctcagttt-tttggaacCGTTAAAACgtcatttcgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=-801.000000
s ce10.chrX             4232963 5 + 17718866 ATGTG-
s caeRem4.Crem_Contig0  1201856 5 -  4500979 ATTCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2490214 5 +  4147112 -ttttg
i caePb3.Scfld02_0      C 0 I 1355
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e cb4.chrX              9341551 20 + 21540570 I

a score=-621.000000
s ce10.chrX             4232968 20 + 17718866 GT------------CTTCTTTTGTTCTCATTC
s caeRem4.Crem_Contig0  1201861 32 -  4500979 GTGAGCAAGGAACCCGTACACACTTCTCAAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2490219 1355 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e cb4.chrX              9341551 20 + 21540570 I

a score=-12339.000000
s ce10.chrX             4232988 317 + 17718866 ----------------ACGTAAGTTCTGGGAGACAACATTATTTTGTGAAATGGACGGAATGA--AAGTG-GTCAGAGAAGGGTT-----------TTATGGTT---------------------------AGGGGTCTTGAAAAAATATGTCT---------AATGAAATTATTTTGAG-----AAGCTTCAAAAA-TGCAGT--------TTTTTGTA---ATTTGAAAATTTTGTGTTTACAGTAATGTGTAATACTATCCAAAAAACGGCCCTATTTTCCCAAACAATCAAAACCattaccaaaacgcacaattttacaatttttgccctaaaaaatacggtacctggtgggataacgacaatttttgttaa--atg---caaaacggtcatcggttttaa-
s cb4.chrX              9341571 344 + 21540570 ACGCAAATCCAACATCAGGAAGATTC-----AAGAACATCATTTCGTGGGAAGAAATAAAACATCAAGTT--TTATGGAGGCGTGTAGAGTgggagttacggtagttagaaAATGGGCTCTTGTCGGTGATTTTGATCTTCAGAATTAttgttgttgaaaaaaaaggaatttaacttgagttttaaaaatttaaaaactgaaatggcttagattactgtaagaaCTAGCAAAGtt-------------gtttctaaaatttttcaacatgcagatatattttcataaa---------------------------atttttcatttttt----cataagataattaagtttt-----------ctatatttaaaaatcatgaaactaaattctcaaaaatctaaaa
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1201893 237 -  4500979 -----------ACATCATTCAAACTCTT---GAGAACATcatttcgtttaaaaaaatgcattat-gAGTCAATCCTAGATGAGTG------------TACTGTA---------------------------Tatgttttttcgaatt----------------gaGGGAAACAACTggag-----aaaatatgaata-tgaCACG-------TCACTG-----ACTTGGAAACT-----------------------ATTACTCAGAGCCCAGAACTA--Ctcataaa---------------------------------------------tgaaaaataataaaacttcG--------GAATAACTCTGTCAATCATG--Tcaaatctgtcatttttcttca-
i caeRem4.Crem_Contig0  C 0 I 42
e caePb3.Scfld02_0      2490219 1355 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=366.000000
s ce10.chrX             4233305 55 + 17718866 gaagtactgaaatttcaaacttAAAACTTAAC-Tattttcaaaaagtctcatgaaa
s cb4.chrX              9341915 50 + 21540570 ----ttctgatataTCAA--TTATTCATCAGCGTGTTCTTCCCAAGTCTGATCAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2490219 1355 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e caeRem4.Crem_Contig0  1202130 42 -  4500979 I

a score=-14542.000000
s ce10.chrX             4233360 441 + 17718866 -----------------ttcagaaacattttttgaacttt-ttactgtgacatttgattattatgttgtcataggcactaatcaaagTTTGAAAAAACAGTACTTTTTGAAGGATAGCACTTTCTTGAATTTC-GCACATAAAAAGCATATTAGAAAACAACAAAAAATGACGGTAATAGAATCAAAAAAAAAGTTTTAGATTATATTTGAATATACAACAAAGTTCAAACGACAAAATTAAATATTTGTATAGTTTCTAAAAATTTAATTTTATGAAGCCCTTGAGTTTTTGAAAATTATTTTCATGGCTTAAACCACACAATTTTTTGTTTTCTGACTTCATGTTGTGAATTCATTCTGATTTAAACCGCAATTGCAAGAAAGTGGGGGAACAAGAACTGAT-TCAGCTCCA-AAGAAAAAGGTTCTCGGTAGGAGTACTTTAAG--AGGCCT--------TCTTCAC---AA
s cb4.chrX              9341965 292 + 21540570 ATCCGAGACGCTCACTTTTCCGAAAC----CTTACtttttctgactgggaaa------tattttgttgtgaa----------------ctgaaattttgatttctttt---------cgttttttgaaatctcaatttttgaaaa--cttata-----tatcaaaacaaga---------aatcagaaaaacaa-------------ttggaaaaaaactttag--------------TCTATCACTTAT------------TACTCAACCCTACAA------------tatggaaaatag---------aaaagaaaaggagataTACGATTTGCGCCT------------------------------------ACAAAAG----------------------TTGTCTAGATCAG----------CCATT--AAGTACTTGAAG--TGCTCCATTCCGAGTCTTCGCACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1202172 269 -  4500979 -----------------TTCAGAAAC----CTTAAATTTT-TGACTAGgaaa---------ttatttctgaa---------------tttgaaaattggattttatgt---------tttcttgtcaaatttt-ttatctgaaag--ATACCACACCTTATCAAAACAGAA---------AGTCAGAAAAACAA--------------TGACTGTGCGCTCTAG--------------TCAGAGACTTTT---------------------------------------------------------------------GAAGATCGACATTCTAGGACT-------------------------------------CACAAAAATTAGAGTATAAAAATGCAATTCGGTTACAAAAGAAGTCTGTTTCCAAT--GAGCACTTTAAGTCTCTCCCAAATAGAGTTTTCAC---AA
i caeRem4.Crem_Contig0  I 42 C 0
e caePb3.Scfld02_0      2490219 1355 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=29166.000000
s ce10.chrX             4233801 183 + 17718866 TGAACACTTTTTCATCAGAACAAATTGGAAGACGAGAC--TCGGGAAAAAATAAATTGCACTACTTCTACCACTTCTACCACTACCACCATATTTCTG---AACT----------AGCAAGAAGCGAGATTAGAAGA--AAACGACGAAAGCGAGTGAATAATACGTCATTTGCAAAGA---CCAGAATGCATATGAATTCGT
s cb4.chrX              9342257 178 + 21540570 TGAACGCCGTT--TTCGGAACCAAA---ACGAGCAAAAGCTAGTGCAAGAATTAATTGCACCGCATCca------------------gctcattttttgtgcACTACTACACGggaaaaagaagtgagattAGAAAATGCAAGGAAGAAT--AGGAAGACCACACGTCATTTGCAAAAAAGACCAGAATGCATATGAGTATGC
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0  1202441 160 -  4500979 TGAACGTATTT-GTTCGGAACAAAAC-GACGACCAGAG--TAGTACAAGAATTAATTGCACCACTACTACC------------ACTTGCACATTTTCT---CACT----------AGGAAGAAGTGAGATTAGGAAA--AAAGGACGA----AAGAAGAGAATACGTCATTTGCAAAGA-------CATGCATATGAATAGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2491574 166 +  4147112 TGAACGTTTTTTGTTCGGAACAAAAC-GAAGACCAGTC--TAGTGCAGAAATTAATTGCACCAATACTACC------------ACCAGCACATTTTTG---CACT----------ACAAAGAAGTGAGATTAGAACAATGAGGgacgaaa--aagagagaaatacgTCATTTGCAAAGA---CCAGAATGCATATGGAT----
i caePb3.Scfld02_0      I 1355 C 0
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=-3082.000000
s ce10.chrX             4233984 40 + 17718866 GTTTTCTTTACTATTATAGAAAGTTATAAAGAGCTGCTTT---
s caeRem4.Crem_Contig0  1202601 25 -  4500979 ---------ATTTTTGTTAGAGAG----AAGA--TCCAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2491740 37 +  4147112 --ATTTCCCCTTCTTCTCAAAAGT----AACATGTCCATGCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e cb4.chrX              9342435 32 + 21540570 I

a score=59626.000000
s ce10.chrX             4234024 305 + 17718866 GGAAAA--------AAAAAATCTT---CACACTCTCTCTCTATCAGTT--TTGAGTTCAGTTCCCTTCTTCTTC------AATGTGTGTGAAAATGTTGAAA--TTTGAAAAATTCCG----------------------TGACTCTGAAGCTCAAACA-TTTTTCGCTCTTTTCGCG-TTTTTTGTTCGAGGAGGGAAAACATGTCTAAAGAA---------GAAAAAGAAGACGTTTTCCT---TTTCTATGGCTGCTCAACAACCGGGCGG---------TTGTTACAAA-TTCCTTTGC-AAAAGAGCATATTTGAACGAGATAACGAGGCTCTTATTGGAAATTTTGTCACTTGTC-ACAATGTCAAG-C
s cb4.chrX              9342467 318 + 21540570 --------------GAAAAACC-----AAGACCC------TATCAGTCGAGTgag---------------ctttttttggaatttttgaga-gatgTGGATATGTGTGAAAAATTCagtaagccaaaaaaaaatttcaaaaaattctgaa-ctcaaacattttttcgct-ttttcttg-ttttttgttc-------aaaaacatGTCTCAACAAAggcaaaagaagaaagaagacgtTTTTCCTCACTTCTATAGCTGCTCAACAACC--ACCGCACCCCGTTTTGTTGAAAA--TGCTTTGCAAAAAGGGCATATTTGAATGGAATAACGAGACTCTTAGTGGGTATTTCTACACTTTTTTAGATTTGCAGA--
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0  1202626 285 -  4500979 --AGGC--------GAAAAAACTTGAGAAGACCCGATCG-TATCAGTT--TTGAG---------------CTTC------AATGTGTGAGA--ATgtggaaa--tgtgaaaaattcag----------------------------tgaa-ctcaaaca-ttttccgct-ttttcgtgtttttttgttcgaagAGTGAAAACATGTCTAAAAGAAGGCA----AAGAAAGAagacgtttttcttt-tttctatggCTGCTCAACAACC--GCCG---------TTGTTAGAAAATTTCTTTGC-AAAAGGACATATTTGAACGGGATAACGAGCCGCTGAGTGga-attttgtcacttttt--gaatgTCAAAC-
i caeRem4.Crem_Contig0  C 0 I 80
s caePb3.Scfld02_0      2491777 282 +  4147112 GTAgacaaaatactcaaaaaac-----caGACCC------TATCAGTTT-TTGAG---------------TCTC------AATGTGTGAGA--ATgtggaaa--tgtgaaaaattcag----------------------------TGAA-CTCAAACA-TTTCCcgct-tttttgtg-ttttttgttcaaaaagtgaaaacatgCCTAAAAGAAGGCA----AAGAA--AAGacgtttttcct--tttctatgGCTGCTCAACAACC--GCCG---------TTGTTACAAA--TTCTTTGC-AAAAGGACATATTTGAACGGGATAACGAGCCTCTTAGTAGAATTTTTGACACTTTCCAACAAGTCAAAG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=-4403.000000
s ce10.chrX             4234329 51 + 17718866 -------------------AATTT----CGACAGCAAC-----------GCAAAAAAAGGAAAAAAAAAG-----AAATCCGTATCAGAA---
s cb4.chrX              9342785 76 + 21540570 AAAACCAGTTGAAagctggaattttctgaaacagcAAC---------------AAATGGAAATCACACGTGAttcaaatgaattttctaaa--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2492059 83 +  4147112 ------ATTTCAGAGATGCAGAGC----AAAAAACAACCGAGTAACCCTACATAGATAGGGGAAACATCGGgctgaaatattttatataaaca
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e caeRem4.Crem_Contig0  1202911 80 -  4500979 I

a score=17127.000000
s ce10.chrX             4234380 208 + 17718866 TTCAAACAA------ATGCTAGGTGATTGCTATTCATG--CACTTCTGAGAAAAGAATGAAAAAC----CAACAAAG----TTTGAGAGA-TTGAATGAGA----TTGCGGAGCAGTTTTCTCACAAC-AACAAAAAAAAACAGGAAAAAGGTTGAATTTGTCCT-------GAA-----------TGGGAA--AAA--GGAATTGTCAGACAATCTGA-----------------GGAGCATGT-------CTTTAGATGGATGACTTGTCAGAA
s cb4.chrX              9342861 251 + 21540570 ttccaaaaactctgGATTTCACGTAAATCCTTATAACAAGTGCACGTTG---ATTGACAACATACTTCCGAATCAGGCTCTCGGAGGAGCTTTAGCCTCAA----------CACAATTTTCTCACGATGAACAAA-GAAAAGAAGCAAAAGGTTGAATctaaatcgaagaaaaaagtgtgccGCGCTGGGAAATAAGATGGAATTGTCTGACAAGCTGATGTCCGGAATAATCTTGAGATC-----------CTTTTGATCAATGACTTGTCAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1202991 230 -  4500979 TTCTAACAA------ATGCTATGTGATTGCGTATTCAGAGAAAATCTGGG-AATGAATTAGAT------GAATCAGA----TGTAACAAC-TTATTCACGA--------GCCACAATTTTCTCACGA--AACAGA-------AAGCAAAAGGTTGAATCCGTCTC-------AAAATGCGC--TCATGGGCA--AAAACGGAATCGGCAGACAATCTGATGTCTCGGACAATCTTGAGAGCATGCCGTGACTCTCTTGATCGATGGCTTGTCaaaa
i caeRem4.Crem_Contig0  I 80 I 837
s caePb3.Scfld02_0      2492143 233 +  4147112 ttcaaacaa------ataCATCCTGATTGCTGATCCAG--------TGGG-ACTTGtcaaaa-------gaacaaaa----cgaaacatc-ttattcaaaaaaaagtaagccGAGGTTTTCTCACGA--ATTGGG----AGGAAGCATAAGGTTGAATCCGTCTC-------AAACGACGC-GCATTaaaaa--aaGACGGAATCGTCAGACAATCTGATGTCTTGGACAATCTTGAGAGCATGCCGTGACTCTCTTGATCGATGGCTTGTCAAAA
i caePb3.Scfld02_0      I 1 I 1251
e caeJap4.Scaffold17084  166983 2708 -   375229 I

a score=486.000000
s ce10.chrX             4234588 20 + 17718866 TGTAATGGGTGTCCCTCAAA
s cb4.chrX              9343112 14 + 21540570 ---AATGAATG---CTCAAA
i cb4.chrX              C 0 I 1100
e caePb3.Scfld02_0      2492376 1251 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e caeRem4.Crem_Contig0  1203221 837 -  4500979 I

a score=0.000000
s ce10.chrX             4234608 1088 + 17718866  
e caePb3.Scfld02_0      2492376 1251 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e cb4.chrX              9343126 1100 + 21540570 I
e caeRem4.Crem_Contig0  1203221  837 -  4500979 I

a score=235.000000
s ce10.chrX             4235696 20 + 17718866 TTTATCCCTGAATTCAATAA
s cb4.chrX              9344226 19 + 21540570 tttactAATGAAtacta-aa
i cb4.chrX              I 1100 C 0
e caePb3.Scfld02_0      2492376 1251 +  4147112 I
e caeJap4.Scaffold17084  166983 2708 -   375229 I
e caeRem4.Crem_Contig0  1203221 837 -  4500979 I

a score=691.000000
s ce10.chrX             4235716 9 + 17718866 TTTTTAACC
s cb4.chrX              9344245 7 + 21540570 tttttaa--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  169691 8 -   375229 TTTTTAAC-
i caeJap4.Scaffold17084 I 2708 C 0
e caePb3.Scfld02_0      2492376 1251 +  4147112 I
e caeRem4.Crem_Contig0  1203221 837 -  4500979 I

a score=17855.000000
s ce10.chrX             4235725 157 + 17718866 ACTAACCGTATAAGTTAAGTCAACGTCTTGGTAAATGGATGATCGTTTCCGAACTGGATGCATTTTAATGG------TATCCTTTTGTAAATTGC--AGCAAA-ACCTGAAATTATCTAAT---TTAAGACTTTAAAGCTTCTAAAAACTTAACAAG-------------------------------ATGAAAGAAAAA
s cb4.chrX              9344252 149 + 21540570 acttacaGTATACGAGAAGTCGACATCCTGGTAGATTGATGAACGCTTACGGACTGGATGCATGATGAGAC--------------AATAATCCGGTAACTGagtagctgaaattttcaaaa---ttaacaattttcagattcctcgaAA---ACGAG-------------------------------GAGTAAGTAAAA
i cb4.chrX              C 0 I 826
s caeRem4.Crem_Contig0  1204058 184 -  4500979 ACTTACTGTATAAGTCAAGTCGACATCCTGGTAGATTGATGAGCGTTTGCGAATTGGATGCATTTTGTGGC------TGTGTTTGAAGAGTCCGCGATGCAAG-AACTGAAAGAATTAAAC---TCGGAATTGTTCAACTTGTACGACC---ATGAGTTGAAA---TAAAACGTCGgaaaaaaaacgcgaaaaaggaaaa
i caeRem4.Crem_Contig0  I 837 I 13
s caePb3.Scfld02_0      2493627 175 +  4147112 ACTCACCGTGTATGTTAAATCAACATCCTGATAGATTGAAGATCGTTTGCGTACTGGGTGCATTTTTCAAC-------GATTCCGTAGAATTGGCGGAgaca--aactggaaaaatgaaaagtttagaTGACTTTGGAATAGATGGGTT---TCGAG---------TAAAAAGTtggagagaac----aaaaaaggaaaa
i caePb3.Scfld02_0      I 1251 I 36
s caeJap4.Scaffold17084  169699 175 -   375229 --TCACCGTATACGTCAAATCAACATCTTGGTAAATTGAAGATCGTTTTCGAACTGGATGCATTTTGCTCTTCGTATTGTCGCGCGCGGAGCCGAGAAGACGA-TGCAAATAACACCAAAAG--CTGAAgaaattagaatttttcacTC---GTAAGGTGGAGTTTTACAACGTGGG-----------Ataaaa------
i caeJap4.Scaffold17084 C 0 C 0

a score=-3904.000000
s ce10.chrX             4235882 27 + 17718866 TTAAAGGCCG-------AAAAAA------AAACAT-------GTGAG
s caeRem4.Crem_Contig0  1204255 41 -  4500979 CGAAAGTCTGACTTTCAATTCAA------CAACATCTAAAACGTGAC
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0      2493838 47 +  4147112 tcaaaacGTGACTTTTAAGAAGAGAAACGGAACATCTGAAAAGGGAA
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold17084  169874 27 -   375229 ------------ttagaagaaaa------aaaaaaacgacgagag--
i caeJap4.Scaffold17084 C 0 I 1009
e cb4.chrX              9344401 826 + 21540570 I

a score=-2368.000000
s ce10.chrX             4235909 640 + 17718866  
s caeRem4.Crem_Contig0  1204296 654 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 164
s caePb3.Scfld02_0      2493885 663 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  169901 1009 -   375229 I
e cb4.chrX              9344401 826 + 21540570 I

a score=297.000000
s ce10.chrX             4236549 8 + 17718866 ACGGAAGA
s caePb3.Scfld02_0      2494548 8 +  4147112 TCGGAGAA
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold17084  169901 1009 -   375229 I
e cb4.chrX              9344401 826 + 21540570 I
e caeRem4.Crem_Contig0  1204950 164 -  4500979 I

a score=0.000000
s ce10.chrX             4236557 1621 + 17718866  
e caePb3.Scfld02_0      2494556  100 +  4147112 I
e caeJap4.Scaffold17084  169901 1009 -   375229 I
e cb4.chrX              9344401  826 + 21540570 I
e caeRem4.Crem_Contig0  1204950  164 -  4500979 I

a score=4696.000000
s ce10.chrX             4238178 38 + 17718866 AAGCCAATTGAAATCCTCTAAAGCACTTTACCCCAATG
s caeRem4.Crem_Contig0  1205114 38 -  4500979 AAACCAATTGGATTCTTTGGAACCAATTTAGTTTAATG
i caeRem4.Crem_Contig0  I 164 C 0
s caePb3.Scfld02_0      2494656 38 +  4147112 AAGCTAATCAAAGTCCTCAAAAACACTTTACATCCATG
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold17084  169901 1009 -   375229 I
e cb4.chrX              9344401 826 + 21540570 I

a score=386.000000
s ce10.chrX             4238216 17 + 17718866 --TTCTTTTAAACTTTT-TC
s cb4.chrX              9345227 17 + 21540570 TTCGTTCATGTACTT---TA
i cb4.chrX              I 826 C 0
s caeRem4.Crem_Contig0  1205152 15 -  4500979 --CACTTCTGTACTT---CC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2494694 18 +  4147112 --TACTTCTGGACTTCCGCc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  169901 1009 -   375229 I

a score=88820.000000
s ce10.chrX             4238233 246 + 17718866 TGCACTTT--TTTTTTATTTGGAAAAAA-GTGGTAAGACAAAGTG----------------A-------AGAAAAAAGAAGAAGTGTATGAGGAAGAGAAGCC--------CCCCAAAGCAGAATACCTGATTAGCTGTGATAATTGTAGGAGGTTGAGCAAGTAAGTGCGTCAGTTAG-------AAGCTCAAAGTACA---TTGAAAAAGTGTATTTTGTTG--TGTG---------TATGCATCAAGTTGCATGCCA-TTCCGTCCCTCAGTGTATATTAATCCCCCGGGGCCAAAAAT
s cb4.chrX              9345244 267 + 21540570 tgcacttt--ttttcaagaaagaaaaaa---ggaaatgcaaagta--gatggaagacgacgacgccatcaaaagaaaaaataagtgtATGAGGAAGAAGAGCCCCTCCTCACCCTAAAGCAGAATACCTGATTAGCTGTGATAATTGTG-------GAGTGAGTAAGTGCGTCAGTTAA-------AAGCTCAAAgtaca---ga-aaaaagtgtatTTTGTTG--TGTGCTTGGTGCTTGCGCATCAAGTTgcatcctt------tttttcagtgtatATT-ATTCCCCAGGGGC-AAAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1205167 256 -  4500979 TGaactca--ttttccaaaaagaa--------gaaatgtaaagtggcgattgaagacaaaaa-------aagaagaaaaagaagtgtaTGAGGAAGCAGAGCC--------CCCCAAAGCAGAATACCTGATTAGCTGTGATAATTGTGGCTCGTTGGGTGAGTAAGTGCGTCAGTTAG-------AAGCTCAAAGTACA---CT-AAAAAGTGTATTTTGTTGCATGTGTTTG-----TGCGCATCAAGTTGCATCCAT----CCTTTTTGAGTGTATATTAATCCCCCCGGGGC-AATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2494712 257 +  4147112 tgcacttt--tttctgaaaaaaaaga------gaaatgcaaAGTG--GTAAGAAGacgaaat-------agaagaaaaagg--gtGAATGAGGAAGCGGAGCC--------CTCCAAAGCAGAATACCTGATTAGCTGTGATAATTGTGGCTTGTTGGATGAGTAAGTACGTCAGTTAA-------TAGCTCAAAGTACA---CT-GAAAAGTGTATTTTGTTGT-GGTGTTTG-----TGCGCATCAAGTTGCATCCCCCATCCTTTTTTGAGTGTATATTAATCCCCTCGGGGC-GAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  170910 257 -   375229 TGTACTTTacttttccacaaaaaaaatctgacCATACTTCAAATg-------acgacaa--a-------aaaagaaagaggaaGTGC-----------TAACG--------CGCCAAAGCAGAATACCTGATTAGCCGAGATAATTGTGGTtgagtaagtaagtaagtaagtaagtaagtggCTTAACGCTCAAAGTACAAGCAT-AAAAAGTGTATTTT-TTG--TGTGGTGAG----AGCCCCTCGAGTTGCATCTTT--TTTCCCTCCAAAACTAGATTGATCCCCCGGGGCGACGAAT
i caeJap4.Scaffold17084 I 1009 I 1583

a score=698.000000
s ce10.chrX             4238479 319 + 17718866 GACAAAATAGTTGTTTG---------CTTCCTTGTTAACGC--------TTTGAAAAAT-----------ATCAATGTTAGAGAAAAGTGACAGAATAAC--------TTTTTAAAAATTGTCGATTGTTTT-------TTTTTTGTT---GGAATTTCATGTAAAATAAGAAGTATTTCAAAATAACACAATACAGAATACAACGAGA--------CAACTTCTAAATACCTAAAATTGCTTCAAATAGG----------AAAATTTGG---AAGACCCC---------AAGAAACCTCATTACTTTAT----CCAATTTCCGGTGTTTCTAATGA--------CCATTCGCTATTTTCCGATTAGAAAACTTGATTGATAAAGCAGAATTGTACGTTAGCACGTT-
s cb4.chrX              9345511 315 + 21540570 GA-AAAATAgttgttttgaagtttt-cttcCGTGTTAacgc------attttgaaaaatgaaaaagcaaagtaaccgttaaata-aagaaaaaaaaaca---------tatggCAACATTTTCcagtgttttcagaaaaccatt-------------------caaaaaaacagGGCTTATTTTTACGA-GGTGTGGGATAGACTACG---------------ACAAATAC------TTGTTTT--CTAAGACA-------AAAAATGGGTTTAAAAGACT----AACTAAAGCAATCGTATCAGTTGGT----CCAATTTCCGGTGTTTCTAATGAGATACGTCAAGTTTA---------GATTAG------TAATTTATGACAGGAAATTGGAC-TCATCAccat-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1205423 340 -  4500979 Gacaaaatagttgtttttgatgttt-cttcCTTGTTAAAgc------atttgaaaaaagcaaaaaacaagctgaatgttgaaaacgagaagaaaaaacat-catAATTTATTACAACATTTTAAAGAGTTTTTAAGATTTTATCGGTT-------CCTCCAGACACCAAAACAGGGTTTATGGATGAGA-GGTGTG---TACACTTGGT--------GAATACTCAAATACTTGAAATTGCTTT--TTGAGAAACGAAAACACAAATGGG---AGAATACT--CGAAAGATAAAAATCCCATTACTCTAT----TCAATTTCCGGTATTTctaatga--------acattt------------ttta------caCATTAGGGCATGTATTAGG---TCATCACGtt-
i caeRem4.Crem_Contig0  C 0 I 102
s caePb3.Scfld02_0      2494969 335 +  4147112 GACAGAAGAGTTGTTTTTAGTGCCCGCTTCCTTGTTAAcgcttttctgttttcaaaaaatagaaag------aaccgtttgaaa-aaccaacaaaaccaTGCA-----TATTA------TTTTAAGtgttttgaagatattttgaGTCTGAAGAAtgccaaaaaccaaaaacagaaGTTTTCGATAAGA-AGAATT---TACGTATAGTGGTGGTCAGAATACTTAAATGTCTAAA-TTGGTTT--CTGAG----------AAGAATGGG---AAAGGTCCTCTTCAAGATAACAATCTCATTACTTACTCCAACCAATTTCCGGTGAAGCTAATGG--------ACACTC-----------------------GATTTATTCTCTGAACTTG----CGATAACAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  171167 1583 -   375229 I

a score=-4324.000000
s ce10.chrX             4238798 85 + 17718866 TTGTAGGGCTCA--GTAGAATAAGCAGG-GTCTGATACatatctcagtgggtagttgtgacagcgatctataggccacgagttcaaat-
s cb4.chrX              9345826 83 + 21540570 ----ttggattactgtagagcaAGAAAT-TAATGGCAGTTGGTTAAAATAATAATTGCAACCTCGACCggtttgttaaaaattttggt-
i cb4.chrX              C 0 I 66
s caePb3.Scfld02_0      2495304 70 +  4147112 ----ACGACTTGATAGGGAATACTAAATCTTGTGATTTCTCTTTAgagttgaaaatg---------------ttttctgagttttgaGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  171167 1583 -   375229 I
e caeRem4.Crem_Contig0  1205763 102 -  4500979 I

a score=-650.000000
s ce10.chrX             4238883 21 + 17718866 cctgaacccctcccccctccc
s caePb3.Scfld02_0      2495374  4 +  4147112 CTTG-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  171167 1583 -   375229 I
e cb4.chrX              9345909 66 + 21540570 I
e caeRem4.Crem_Contig0  1205763 102 -  4500979 I

a score=-965.000000
s ce10.chrX             4238904 11 + 17718866 tccagaagtac
s cb4.chrX              9345975 11 + 21540570 ttcagaaaaaa
i cb4.chrX              I 66 C 0
s caePb3.Scfld02_0      2495378  4 +  4147112 ----GTAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  171167 1583 -   375229 I
e caeRem4.Crem_Contig0  1205763 102 -  4500979 I

a score=-17782.000000
s ce10.chrX             4238915  71 + 17718866 -aaaaaatctacgacaagattattgccca--------TCTTGAACAAAAACTAAAAGATGataaatttaaataa------------------------------------------aaagat---------------------------------
s cb4.chrX              9345986 144 + 21540570 aaaaacaatttttttttatttttcgactGCCT-----TCTTCTTTGCTGTCT------TTGTTAAATTAGATAACTGTTCCccttcaaatcaaaaaaagtctcaagttttaattcgaaatttttaaactgtGGAAGACGGCGgtccgaaaaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1205865  56 -  4500979 AAAAAC----------------TCTACTAC-------------------GAT------TTGTAAGGTTACATAA------------------------------------------GAATTTTTAaa----ggatga---------gaaaaa---
i caeRem4.Crem_Contig0  I 102 C 0
s caePb3.Scfld02_0      2495382  81 +  4147112 -AAAAGGATTATCGCTAAATTATCGCCTACACATATATCTCACCTGATAGCG------TCG--GAGGTAAATAG-------------------------------------ATTTCAGTTCATACAA----------------------------
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17084  171167 1583 -   375229 I

a score=45641.000000
s ce10.chrX              4238986 230 + 17718866 tataattaattatatcttaatatC----------TTAGAA-----------------------CTACATTAT--GACAC-----------TAAGCTCGTTTAAATGAATACGTCTATAATTTTTGCTTAGAATACATTTCTATAGGGTTCCTAGGATATA------AAGATCGAAGATGAATGAG----------TTGTGAGACAATATAATAT--A--GGATGTCGAATTCAATTTGCACAGCATTCAGAAATTGGATGGATTTGATTATCTATTGCTCACACGTCAAACAACTA
s cb4.chrX               9346130 246 + 21540570 --------------catttgttCGGGCCGGTCAGTTGCAAAGATGGTTAAGCTCTCAcccccccAAGACGCT--AAATT-------CAacaaacttcattttca-----aaaaaaagaagctgtCCCAAAAAT------------AGT-----TG-CGTCTCGGAAGGAATCGGAGATGAATGAATAGAGTTGATTCTAGAGACAATATAATAC--ATCGGATGTCGAATTCAATTTGCACCGCATTCAGAAAACGGATGGATTTGATTATGTAT--CTCACACGTCAAACAGCTA
i cb4.chrX              C 0 I 361
s caeRem4.Crem_Contig0   1205921 163 -  4500979 --------------------------------agttg------------------------------------------------------------------------aagaacaAAATGTTTCCCAAAAAT------------AGC-----TGACATC------AAGATCGGAGATGAATAAATAGAGTTGATTCGGGAGACAATATAATAT--A--GGATGTCGAATTCAATTTGTCCAGCATTCAGAAAACTGATGGATTTGATTATCTAT--CCTACACGTCAAACAACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14729485 242 - 20921866 TGTCATTAAT--TAtatcaatttcaatga---aattagaaa---------------------tcCATAGTATTGAAAATAGTTCGGGATAAAAGCATACATTTG-----ACATTTAAAAGTGATTGAACAAATATA--TCTGAGAAGT-----GAATACA------AAGATCGGAG----ATGAATAGAATTGATTTGTGAGACAATATAATAT--A--GAATGTCGAATTCAATTTGCACAGCATTCAGAAAACGGATGAATTTGATTATCTAT--CTAACACGTTAAACAACTA
i caeSp111.Scaffold630  N 0 I 310
s caePb3.Scfld02_0       2495468 222 +  4147112 TGGCagtaa---aatattattttggaCG------TTGGA------------------------CGACATTAT--GAAAT-------GATATAAACTTTTTGtta-----aaatggaattttcactCTAAAAAT------------AGT-----GAACATA------GAGATCGGAGATGAATGAATAGAGTTGAATCAAGAGACAATATAATATAAA--GGATGTCGAATTCAATTTGTCCAGCATTCAGAAAACGGATGGATTTGATTATCTTC--CTAACACGTCAAACAACTA
i caePb3.Scfld02_0      I 5 I 353
e caeJap4.Scaffold17084   171167 1583 -   375229 I

a score=51.000000
s ce10.chrX              4239216 22 + 17718866 TTTCTATATTTTGTTAGTCGAA
s caeRem4.Crem_Contig0   1206084 21 -  4500979 AAGTTACGTGTT-TTAGTCAGa
i caeRem4.Crem_Contig0  C 0 I 197
e caePb3.Scfld02_0       2495690 353 +  4147112 I
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376 361 + 21540570 I
e caeSp111.Scaffold630  14729727 310 - 20921866 I

a score=0.000000
s ce10.chrX              4239238 3257 + 17718866  
e caePb3.Scfld02_0       2495690  353 +  4147112 I
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376  361 + 21540570 I
e caeSp111.Scaffold630  14729727  310 - 20921866 I
e caeRem4.Crem_Contig0   1206105  197 -  4500979 I

a score=39.000000
s ce10.chrX              4242495 18 + 17718866 TGTGGCGCTTTACCTGTG
s caeRem4.Crem_Contig0   1206302 15 -  4500979 TGCGCCGCCATAGCT---
i caeRem4.Crem_Contig0  I 197 C 0
e caePb3.Scfld02_0       2495690 353 +  4147112 I
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376 361 + 21540570 I
e caeSp111.Scaffold630  14729727 310 - 20921866 I

a score=22520.000000
s ce10.chrX              4242513 315 + 17718866 CAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAACATTTTTAGTCttaaaggtggactatcgccagtgaacaaagcgttaaaacaatttttatggtaccaaacgtttcaaaaaaaaacatgaattttttgtcttattttgaaaagtggtaatcactc-agtttttgtc--actatttggaagtcgtcaaaaaacgtttttctttcaaattttattatcttctggggcttaaaatattaatattctaaaattgtaagaatttgaacattgggcagtattgttttctcaa-----
s caeRem4.Crem_Contig0   1206317 168 -  4500979 CAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAACCTTTTT-----------------------------------------------------------------------------------GATTGACTTTGTTTC--------ATAGTGATTT----TGAAATC--GACTCTAGGAATTAACTGAA-----------ttgcgaattttca-----------gc--------ttgat------gAATaataa-----------------attgttgttttcttga-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14730037 163 - 20921866 CAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAATGTTTTT-----------------------------------------------------------------------------------TGCTCGTCTG---------------AACAAGTT-AATCGTTTTCAGGCGTTT-----ACTAC-ACA-----------TTTCTAATTCTGT---------------------TTTAT------AAATTataa-----------------attgttattttcctGGCCAGC
i caeSp111.Scaffold630  I 310 C 0
s caePb3.Scfld02_0       2496043 177 +  4147112 CAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCGCAGGTTCGACCCCTGCTGGCGGCAAATtctttt---------------------------------------------------------------------------------gctgtttttctAGCTTT--------CCAGCAAGTTGGATAAAAATC--GCGTCTAAGAAATTACTACA-----------TTTAGAATTCTGT---------------------TTGAT------AAATAATAA-----------------ATTGTTATTTTCCTGGTTAGG
i caePb3.Scfld02_0      I 353 C 0
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376 361 + 21540570 I

a score=-6554.000000
s ce10.chrX              4242828 160 + 17718866 aaagtggtgaaaactcagtaattgacactttttgaaacaaagtaaaaatgttcaaaatttttatcaaaaaatttactatgacgcttagtaattttgtcattataggagtagtctttgacaattaccTATCCCCACTACTTGTAAAGTTGATTCTTATAAG
s caeSp111.Scaffold630  14730200  44 - 20921866 TAAGC--------------------------------TAAAACGTGAGTTTACA---------------------------------------------------GAGTT-ACGAAGATAAGTAtcta--------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2496220  63 +  4147112 AAAGCAAGGAAA---------------------GAAGCAAAGCAGGAGGTTACA---------TCAAAGAC----------------------------------GAGTA-TCTTAGAGGAGTATCTT--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376 361 + 21540570 I
e caeRem4.Crem_Contig0   1206485   0 -  4500979 C

a score=-4791.000000
s ce10.chrX              4242988 48 + 17718866 CTTTTATTACAGAAATGAACACTAGAACCCTGTGA--------GAAACTGGGTGGG
s caeRem4.Crem_Contig0   1206485 52 -  4500979 CTACTAAAACAGGAATGAAGACTTGAGGTTAGATAGAAAACCTTAAGCTAAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14730244 10 - 20921866 -------------------------------------------aaatctaaac---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2496283 10 +  4147112 -------------------------------------------AAAGCTAAAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   171167 1583 -   375229 I
e cb4.chrX               9346376 361 + 21540570 I

a score=21905.000000
s ce10.chrX              4243036 100 + 17718866 CTTCTCAGGGCAAGAAA---TAAAAATAGAAA----GCAAAAAAAG----AAAAAATCTGAC-CCAATCTCAATTCTAAACCAAAAGATATCGCAACTTTTTGAAAACAC---A--C
s cb4.chrX               9346737 104 + 21540570 -CTTCtcgatcaaaaaa--------agaaaaactaggcaaaataaaacgcaaaaaaTCGGAC-CAGA-GACGTCCGGAAGAGACAAGATATcgcaactttttgaaactaccaca--a
i cb4.chrX              I 361 C 0
s caeRem4.Crem_Contig0   1206537  97 -  4500979 CTTCCTCGAccgaaaaa--------cgagaaaagcaACCAAACAAGA---AGACAATCCGACTCCAA-CTCGTCC--AAAAGAAAAGATATCgcaacttttttaaaccac------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14730254  96 - 20921866 cttctctaagcaaaaaa--------cgagaaa----acaaaata------agaaaatccGAC-CCAG-CACATCCGGAGAAAGAAATATATcgcaactttttgaaaccacCACA-TG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2496293 104 +  4147112 CTtctttcaccaaaaaaaacgacagaaagaaa----acaaaata------ggaaaaTCTGAC-CCAG-CACATCCGGGCGGAGAAG-ATATcgcaactttttgaaaccgaaacatTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   171167 1583 -   375229 I

a score=86155.000000
s ce10.chrX              4243136 302 + 17718866 AAAGACATTTAGACGGCA-TTTGACGTGAATGTCAGAA-AAAGG---TCCAATGTGTTTCCTTTTCTTTTTT--GTGCTCATCCTTTCGAATAGAGCAAGTAA--GTCATACATTTTCTTTGGACAGCGAG----TCACTTTGAGTAGTA--GCCAATCT------------------------------------GGACAAAATGT---CTTTAAGATG------AGAG--ACAAGTTC-------TAGAGTAACTGG-AATT--GTAGAATACT---CTCGTATAATCAAAAAGCTTTTCAGCAAGAA--------AACCTTTGACAATAGGAA-AAAACAAAGTATTTTTCTTCTCAAAAAAATCGTCTTAAACACGGAAAAA---------------
s cb4.chrX               9346841 327 + 21540570 aaagaaatttagGCGGCCTTTTGACGGGTGTGTCAGAATAAAGGTCCTCCAAtgtgtttccttttttgtttcctttaCTCATCTCT-------GAGCAAGTAA------CTCACTC----CAAGCAAAGAG----TCACTTTGGAGTTTGTTTCAGGTCC--CACAATCTATTTAGGATAAAAAGGCTTC---CAAGAATAGAACGA----TTTGTAGTCTAA---GAAA--GGAATTGAA-----GTAGATTTGGTGGTATTT--GTAACAATGTCCCCTCCAGTAATCAAAGTA-----ACAGCC-----------ACCTCCCAACGATAGGAAGAAAACAAAGTATTTTACtgctc-aaaaaatcttctaaaaCATGCCAAAA---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1206634 341 -  4500979 AAAGACATTTAGACGGCC-TTTGACGTGAGTGTCAG---AAAGG---TCCaatgtgtttcttttttcttttcc-ttgcTCATCTCCACAAAAAGAGCAAGTAA--GGATTATACTCCCA-CAACAAAAGAG----TCACTTTGATTTTTGGGTCCAGTCTGAGACAA------CGAAACGACGGGGct------aagaatagaaaaaga-gttggaattctaaactggaa--tagattCGA-----GTGGATTGAGAAG-ATTT--GTAACATTGT---CTTCAGTAATCAGAGTAGTTTTAAAGCCGAACGAGCACAACCTCTCAACGATAGGAA-AAAACAAAgtatttttctgctc---aaaatctTCTTAAACATGGCAAAA---------------
i caeRem4.Crem_Contig0  C 0 I 44
s caeSp111.Scaffold630  14730350 327 - 20921866 AAAGGCATTTAGACGGCC-TTTGACGTGAATGACAGAA-AACGG---ACCAAtgcctttcttttttctttt---ttgctcatCTCAACAAAGAGAGCAAGTAA--GGATTAAACTCCGA-TTGtcagaaac----tgattttcaaagCCA--TCCAGACAAAAACACTCTGATTGAACaa--------------caaaatagaatgaatACTCTGAATTC------GGAA--GAAAGTAG------GTAT-GTTACAAG-AGTT--GTAATTGTGT---TCT--GTAACCAAAGTCG-CTTAAACTAGAACGGACACAACCTCTAGACGATAGGAA-AAAACAGAGTATTTTTCTGCTC---AAAATCTTCTTAAACATGGCAAAA---------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2496397 321 +  4147112 AAAGGCATTTAGACGGCC-TTTGACGTGAATGTCAGAAGAAAGG---TCCAATgtgtttctttctcttttc---ttgctCATCTACACAAAAAGAGCCAAGAA--GGATTATACTCGGA-----CAGAGGG----TCACTTTCCGGGA-----CCAGTCAAAAACCCGCTTCCTAGATTG---------------AAAATAGAGT-----TTGAGACGTC------GTAAATGGAACTCT------GTCTAGGTATTGG-ATTC--GTAAGATTGT---TCCTAGTAATCAAAGTAGTTTTAAAGCAGAACAAGCACAACCTCTTGACGATCGGAA-AAAACAAAGtatttttctgctc---aaaatcTTCTTAAACATGGCAAAA---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   172750 331 -   375229 AAAGGCATTTAGACGGCT-TTTGAcgaaaacgtcaaaaaaaagg---TCCA--GTGTTTCCTTTTTCTT-----GCGCTCATCTTCACCCATAGAGCAAGAAAACGGCTTATACTTCTT-TCAACAAAGCGGCCCTCACACCACAAAATG-----------------------TGAGTTGCTGGGTTTTCAATTGCGAAGGGAATCTTAAATGAGGCGTT------GAAT--TGAAGTCGGCGTCCGGAAAAAGAGTGG-ATTTTCGTAACATTAT---TTCGAGTAATCAAAGCA-------------------AGAACCTCTGGTGGATAGGAA-AAAACAAAGTGTTTTTCTGCTG---AAAATCTTCTCAAACATGGCAAAACATGGGTAGGAACGA
i caeJap4.Scaffold17084 I 1583 C 0

a score=-5764.000000
s ce10.chrX              4243438 27 + 17718866 ACAGA--TGTGCAATGGC---GAGTCGATCAT---------------------------
s cb4.chrX               9347168 25 + 21540570 -------CATGCGGTAGGAGCAAACCAAATGC---------------------------
i cb4.chrX              C 0 I 27
s caeSp111.Scaffold630  14730677 22 - 20921866 -------CATGCCGCCGA---GAGGCTaactc---------------------------
i caeSp111.Scaffold630  C 0 I 21
s caePb3.Scfld02_0       2496718 22 +  4147112 -------CATGCTGCGGG---GAGGCCAacgc---------------------------
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold17084   173081 59 -   375229 ACAAATGGATGATGGCGACTCGAGGCGAGCCGGGCTACTTTTCCTTCTTCAATCTTCGT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1206975 44 -  4500979 I

a score=23367.000000
s ce10.chrX              4243465  85 + 17718866 GGATTCTTTGCTAGCTGAA-----------A-AA-----TTAAGA-------------------------AAAAGAA--GAAGGTTCAGGA----AAAAAGACAAAA--AT--TGTCGTGT-AACACATTTTCCTTTT-
s cb4.chrX               9347220 122 + 21540570 -------Gtcctaacaaaatttttttcttga-atttttcttcaaagtggaagaagacaacgacaaaagaaaaaagaagcgaca----aagt----gaaaagtcgaaaaCATCGTGTGGTGTTAGAATATATTAACAct-
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1207019  90 -  4500979 GGACCTTGTCctaacagaa-----------a-at-----ttcaaagtggaagacgac--------------gaagaa--gacg----aagt-----AAAAGTCGAAAACAT--TGTTGTGT----GTATATTCACATC-
i caeRem4.Crem_Contig0  I 44 C 0
s caeSp111.Scaffold630  14730720  93 - 20921866 GGGCCTTGTTC-Aacggaa-----------t-tt-----ttcaaagtggacgacga--------------aaaagaa--gaca----aagt----AAAAAGTCGAAAACAT--AGTTTTGT-AGCACATATTCACATT-
i caeSp111.Scaffold630  I 21 C 0
s caePb3.Scfld02_0       2496761  95 +  4147112 GGACCTTGTCCtaacagaa-----------a-at-----ttcgaagtGGAAGACGAC-------------aaaaaaa--GACG----AAGT----AAAAAGTCGAAAACAT--TGTTGTGA-AGCACATATTCACATT-
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17084   173140 103 -   375229 GAATcctatccaaaaaaaa-----------acac-----tttaaggtaaaaaagaaaaat----------aaaaaca--gaca----cggcacagaaaaagtcgaaaacat--TGTTATGT-GGCAC-TCTTAGCTTTT
i caeJap4.Scaffold17084 C 0 I 460

a score=7869.000000
s ce10.chrX              4243550 101 + 17718866 C----AAGAAATG--TTTTTGTA----GCTTGCAAACAAAGCCCACCGAGGGTCACCGAATATTTGATTTATGCGAACTTTCTGAGGATGAACAAAAC-----ACTCGCGCGGGAA
s cb4.chrX               9347342  61 + 21540570 c---acaaaaatg--------------------aaaaaaagcgaaTCG---------------------------TCGTCTTT-----TGGACAAAAAAGCTTGCTGTAACAACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1207109  75 -  4500979 C---ACAAAAAAGCTCTTCGGTC----GTCTACGAACAGAGCCCACCG---------------------------TACTTTCTAA--ATGAACAGAAA-----GCGGGTACAGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14730813 107 - 20921866 CTTCACAGAAATGGCCTTCGGTCGCTTGCTTCCAAACAAAGCCCACCG--GGTCAAggaatatttgattttcacaAGTTTTCAAG--ATGAAcaaaaa-----gctctctcaaaaa
i caeSp111.Scaffold630  C 0 I 303
s caePb3.Scfld02_0       2496856  99 +  4147112 C----AGAAAAAGGCCTTCGGTC----GCCTTCAAACAAAGCCCACCG--GGTCAAGGAATATTTGATTTATGTGTACTTTCTCA--ATGAACAAGAA-----ACTCTTCAGAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I

a score=1481.000000
s ce10.chrX              4243651 10 + 17718866 TTTTTGGTTT
s cb4.chrX               9347403 10 + 21540570 ATAATTGATT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1207184 10 -  4500979 AATATGGTTT
i caeRem4.Crem_Contig0  C 0 I 203
s caePb3.Scfld02_0       2496955 10 +  4147112 GTTATGGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I

a score=-3.000000
s ce10.chrX              4243661 5 + 17718866 TTGTT
s cb4.chrX               9347414 5 + 21540570 CTAGC
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       2496965 5 +  4147112 CCGTT
i caePb3.Scfld02_0      C 0 I 556
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=-1641.000000
s ce10.chrX              4243666 442 + 17718866 GTTCAAGACTTGTGAATTTGCAATAATTGTTTTCTTGTTTCTTTTATTCTTTTTTTTGTTGTTCATTTTATCTGTTTTCAAGACTAACCTGAAACTGCAAAAACAAGCTGCTTCCAACTTGAAATATCTAGAAAAAAGCTGGAAACCCGGAGGGAGGAACAAAAAATTTGATTG-------ATTCAAAAACAGAACTGAACAAAATATAAATGT--ATAGACACTGGCTGAAAATCAGAATT---GCAAAAGATGGAATTTTTTGGAAATTTTGGAGTTTCGCCGTTTAAGTTAAATCTTCCGGATTTTCTGAATCTATAAGTGGAATAGGATCTTTCATAAATAAATTATAATACATCACAGGTAAATTCAGATCTATCAACTGTGGCAGATCGGATTAGGTTTTATCTATGACAGAT-----AATATTCCAGCGATGGAGTTCGAGGCAGGTCATAA
s cb4.chrX               9347419 361 + 21540570 ACTCGAAAATCATGAACGcaagaaaatg-----------------------------------------------tttcaggAACAAC-----------AAGAGAAGTTGGTTCCAGATCgtta------------agctgaaaatgtagTTTGCGAATTTGCACTTTTGATTGCTAACAAGTTTGTGAAAAGAGTTAAACGTGAAATAAAGTTTAATTAAAACAGTTC---AATCAGTTTTTATGTGGaagattcagtttttttatcTTTATAGTATTTTCACCtgacattttcattttccaaattacCTACAG-TATTGGACTAAAAGAAAC-------AACATTTTGTAATAAATCAATGGAAAA---------ATCAACCTAGgt-gtcctgaaaaaaatatatctaaaaaatatttccaaattttct-------tagttctctgaaattcataa
i cb4.chrX              C 0 I 37
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=0.000000
s ce10.chrX              4244108 40 + 17718866 GAATTTTGGATTCTATTGTTGGAATCAGATATGTTGTAAC
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e cb4.chrX               9347780 37 + 21540570 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=525.000000
s ce10.chrX              4244148 127 + 17718866 TTGATTTTGATCTACAACAAGCGGATTATGATCAATCAGCTGTGGAAGATCGGACTCCAACTATGGAGTCTAGAACATT-TTCTGACTCCTTAGGTGGGATCTGATATATATGATGCATTATGATCTA
s cb4.chrX               9347817  94 + 21540570 ttaatttcaat-----acaaacaaa-------aaattaggtgtGGCAG-------------------GTCTGGAACAAAATTTCAACCCTTTATATCTAATTTTGCAGA---Gattcaaaatgatcca
i cb4.chrX              I 37 I 132
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=0.000000
s ce10.chrX              4244275 99 + 17718866 CCACGGATGAAATGTGAACATTTAGCTGTGTAAAGTCGGAAGACCAGATTTCGCCTATAGAAAGTAGGTTTTTACCTGTAGAGTCCTACCAGATTTTTA
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e cb4.chrX               9347911 132 + 21540570 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=-45.000000
s ce10.chrX              4244374 96 + 17718866 CCAGAATAACAAAATGATTTGCCACAAAAGTACTAACAAATAATTAAGAAAAAATTCAC----TTTTTCATTAGAATACTCTGATTAAAGTTTTGAAT---AG
s cb4.chrX               9348043 91 + 21540570 TCATCATCACCAGGAGTTATGGCTCAAGAGTACCGC--AATAATT---------TTCGTGGTGTTTTTTGTCGGA-TCCTGTGATTTCAATCCTCAATTCCGA
i cb4.chrX              I 132 C 0
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I
e caeRem4.Crem_Contig0   1207194 203 -  4500979 I

a score=-3078.000000
s ce10.chrX              4244470 139 + 17718866 TTAAAAATTATGTCTGAAGTTTTATTTTCCATTACAAATGTTGTACTATTCTTTTCCAGA-----TTTTATATGTACCGGTCAATTTTT-----TGTTTTTCTCGTATTCATT---------------------ACACCCACGCGGAAAAAATTAGC----TTCTCTACCCTTC
s cb4.chrX               9348134 115 + 21540570 TTCAGTTTTGTTACT---GTTTTCT----------AATCCaagagattttgatttt---------ttccaagttt-tcg---------------tCTTTGACCTATGCCCACT---------------GCTTGAATATTTAC--CAAAACAACCAAT----TTTTGTAACCATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1207397 170 -  4500979 TTAGAAtttatatct---tttttatttatccATACAATTCTCTGgatgttcattttcatacaaTGTTCTCTACTT-TCGGTCGGTTATCATAGTTTTTCGACACGTTCTCATTTTGTCGTAACCATCAACATAAACATTTACTTTAAAACGAGCCCTGTAACTTTGTACTCATC
i caeRem4.Crem_Contig0  I 203 C 0
e caePb3.Scfld02_0       2496970 556 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I

a score=-834.000000
s ce10.chrX              4244609 2 + 17718866 -AG
s cb4.chrX               9348249 1 + 21540570 -A-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1207567 1 -  4500979 -A-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2497526 2 +  4147112 AA-
i caePb3.Scfld02_0      I 556 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I
e caeSp111.Scaffold630  14730920 303 - 20921866 I

a score=119547.000000
s ce10.chrX              4244611 377 + 17718866 TGTTTTGTTGTACCC-----CGGTATTCTTATCAGACAAAAGGGCACTGGTGGGTATTGTCAGA---------TTTT---TGAACCATGTGACTTTGAAT------------CGACCAAAT-TTTGTAGCTTTGTAGAATAAAA-AAGAACAAAGTCCAACAACG---TGATCCATTCGACTATCCGCAATCAAAAAGCGACCTTGTTTG----AAATGTGTCCATAAATTTTGGAGGAAATT------GCTTGACCACAC---------ATGCATTCACCAAAAGAAA------------AACC--ACAAC------ATCAACCATCCCAATTCTCAGTTTAAGAAATA-GAACAAACAAGTGAAAAACACAGCAGCAGCAGCAGCTGATGGTTGA----TTGTAATCAAAAATATCAAAAA----AGAAAACAATTCAAACATTATATTACAC-TGGG--------
s cb4.chrX               9348250 399 + 21540570 TGTTTTGTTGTACTACAATTCATGCTTCTTATCACTTACAACCAAACTTG-CCAttttactattttcagaattttcaccCCACCCCATGTGatcaaaaa-------------caatcaaaattttgtagcTTTGTAGAAT--TG-AAGAACAAAGTCCAACAACGTGAT------------GATCCACCA--ACGAATCGACCTCCTTCTTGTCTAATGTGTCCATAAATCTGAGACAAGGGTAAGACGGGTCGACCACACACTCACATAACATATACACTACCatcagaaaagaaagaagaaccGAAAAACAAAAGTAGCAGC------------------AAGGATTACGAACAAACAAGTTGA-----------TGGTGGCAGCTGACAGTAGAGAATCTGCAataaaaaacaacacaaattTAAGAAAACAATTCAAACATTATATTACAC-TATG--------
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig0   1207568 379 -  4500979 TGTTTTGTTGTACTCCATTTAAGACTTCTTATCAGACAAAAggacattt-----ttattttattttcctgTTGTTCA---CGAACCATGTGATTCGAAATCACTATCGATACCGACCAACA-TTTGTAGCTTTGTAGAA---AG-AAGAACAAAGTCCAACAACG---T------------GATCCGCGA--TCAAATCGACCTTGTTCG----TAATGTGTCCATAAATCTGAGGCGAAGTTAAGAAGGGTCGACCACCCACATAC---ACGCATAAAGAAAGAtggagaaagaaggaa-aaccgaaaaac------agCAGC------------------AAGGATTACAAACAAACAAGTTGA-----------TGGTGGCAGCTGATAGTGGa----ctgcaataaaaaaaacaacaaa---aagaaaacaattcaaacattatattacac-tgaa--------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold630  14731223 356 - 20921866 TGTTTTGTTGTACTT---TTTGGGCTTCTTATCAGACAGAACGAAAATCG-GCATTTAGTCAGA---------TTCA---TGAACCATGTGATTGCGAAT------------CGACCAATT-TTTGTAGCTTtgtagaa---aa-gagaacaaagtCTAACAACG---T------------GATCCGCAAT-GAGAATCGACCTTGTTTG----T-ATGTGTCCATAAATCTGAGGCAAAG-TGAGAAGGGTCGACCACacg--------aag-------gaagaaaagagaagatgga--aatcgaaaaac------agcAGA------------------AAGGATTACGAATAAACAAGTTGA-----------TGGTGGCAGCTGATAGTAaa----gagaactgaaaaaaacaacaaa-taaagaaaacaattcaaacaTTATATTACACTTTGAAGTGTGGG
i caeSp111.Scaffold630  I 303 C 0
s caePb3.Scfld02_0       2497528 361 +  4147112 TGTTTTGTTGTACTC---TACCGACTTCTTATCAGACAAAA-GACTGTTG-CTATTCAGTCAGAT--------TTCA---TGACCCATGTGATTGCAAAT------------CGACCAAGT-TTTGTAGCTTTgtagaa---aatgagaacaaagtCTAACAACG---TGATC-------CGATCCGCAAG-AAAAATCGACCTTGTTCG----TAATGTGTCCATAAATCTGAGGCGAAG-TGAGAAGGGTCGACCACACA--------Aggc------gaaagaagaagaagaagga--aaccGAATAAC------AGCAGC------------------AAGGATTACGAACAAACAAGTTGA-----------TGGCGACAGCTGATAGTAGA----TAGtaat-cagaaaacaacaaa--aaagaaaacaattcaaacattATATTACAC-TAAAAGTATGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I

a score=2657.000000
s ce10.chrX              4244988 25 + 17718866 TAT---ACTACATTTGTTTCCCCC---TTCC
s caeRem4.Crem_Contig0   1207951 24 -  4500979 TATGGGACCTTGTTTACCTC-------ATCT
i caeRem4.Crem_Contig0  I 4 I 14
s caeSp111.Scaffold630  14731579 25 - 20921866 ------ACCATGTTTACTTCTACAACTTTCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2497889 25 +  4147112 ------ACCTTGTTTACTTCTACAAATTTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I
e cb4.chrX               9348649 44 + 21540570 I

a score=-13397.000000
s ce10.chrX              4245013 42 + 17718866 -----------CTCACTTCATCCTGATGTTTTTTTCAGAAATATCTATCACCA-------------------------
s cb4.chrX               9348693 38 + 21540570 -----------TTCAAGTAATCATGCT------------------ACT-----------TTAGTCATGtgttcctttc
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   1207989 63 -  4500979 -----------TTCAAGATACTATTCT----TGTGCAAAAGTCCAACTAATCATGCTAGTTAGTCAtgtgctcttttt
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold630  14731604 44 - 20921866 ATATCTGTACT------TCCCTATCTTC--TTTTGCACAAGTTCAACTAATC--------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2497914 50 +  4147112 ATTCTTGCCCTGTCcagtttctattttc---tttgCAGAAGTCCGAGTAATCA-------------------------
i caePb3.Scfld02_0      C 0 I 81
e caeJap4.Scaffold17084   173243 460 -   375229 I

a score=-1954.000000
s ce10.chrX              4245055 62 + 17718866 AAGAACA--------------------TTTATT--CAATTTTCTGCTCGAAAAACTCTAAATTGACAACCAACAACAT---TTTGAA
s cb4.chrX               9348731 39 + 21540570 ---------------------------tttttt-----cttcctgctCGAAGAGCTTTAACT----AGCCAAA--------TT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1208052 52 -  4500979 ---------------------------tcttttcatgacTTCCTGCTCAATAAGTTACAAGT----GACAAAagtcttctcct----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14731648 73 - 20921866 -AGGCTATTTTGTCatgtgctcttttttctttttgtcacGTCCTGCTCAATAAGTTACAAGT----GACACAAAgcct---------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2497964 81 +  4147112 I
e caeJap4.Scaffold17084   173243 460 -   375229 I

a score=29021.000000
s ce10.chrX              4245117 85 + 17718866 TTTCCTTTGTT-CGCAATATTTCAGACACGTTTTTAGG----GTTGTTTATGAAAC----A-CTGGTTGCCCGGTGATAAC----ACTTGTTGCCACCT
s cb4.chrX               9348770 89 + 21540570 ATTCTTTTGTT-CCCATTGTTTCAGATACGTTTTTAAC-GTGGTTGTTTATGAAACAGA-A-T--GTTGCC----AACTGTTTCATTCTGAAACAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1208104 93 -  4500979 tttcttttgtt-tcctTTGTTTCAGACACGTTTTCTAC----GTTGTTTACGAAACATACA-TCGGTTGCCCGGTGATTATTTCATTCTAACACAATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14731721 98 - 20921866 tttcttttgttaCCCTTTGTTTCAGACCCGGTTTTTAACGTTGTTGTTTACGAAATGTGTG-CCGGCTGTCCGATGataatttcagttgaatACAATGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2498045 95 +  4147112 TTCCTTTTGTTCTCCTTTGTTTCAGACCCGTTTTTAAG----GTTGTTTACAAAACGTGTGCCCAGTTGTCCGATAATAATTTCATACTAACACAATGG
i caePb3.Scfld02_0      I 81 C 0
e caeJap4.Scaffold17084   173243 460 -   375229 I

a score=49308.000000
s ce10.chrX              4245202 60 + 17718866 CAAACATATGTG------TCTAAAATTAGTTA---GAT----AGTATCAAACAGCTGACACAAAGAACTATCA
s cb4.chrX               9348859 67 + 21540570 CAAACACATGTGT----ATCTAAAATTAGTGAC--GAGTCTGATTATCAAACAGCTGACACAAAGAACAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1208197 67 -  4500979 CAAACATATGTG------TCTAAAATTAGTGACGGGAGTTTTATTATCAAACAGCTGGCACAGAGAACAATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14731819 67 - 20921866 CAAACATATGTGT----GTCTAAAATTAGTGAC--GAGTTTGATAATCAAGCAGTTGTCACAAAGAACAACCA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2498140 66 +  4147112 CAAACATATGTGT----GTCTAAAATTAGTGAC--GAG-TCGATTATCGAACAATTGACACAGAGAACAATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   173703 62 -   375229 CAAACATATGTcgttaaatttaaatttagtGAT-----------TATCAAACAGCTGACACAGAGAACGATCA
i caeJap4.Scaffold17084 I 460 I 811

a score=34604.000000
s ce10.chrX              4245262 200 + 17718866 CAATTATAGATGAATCTGC--AAGAA--GGTTACTTGTTTTGGCTGACTTTTTTTGAATGGCAAGTTAGGAGAATCGCGTGATGGGAATAAA-------CAG------ATAAATATG--GTGAGCCGA----------ATGTGCATCATT---------TTGTGGGGTGACTTTTTGTTTTA--------TTTTT------TTCACG---TCGTTTCGTTGAAAACTGATAAGAAATAAGCGGGAAAAAGTGTTC------------
s cb4.chrX               9348926 218 + 21540570 GAGTTGACAACAGTGTTGC---AAAATTATAAAGTTGTTGTTAC------------GATGGTAATTTCTG---GTCACCTGACATTGCTATA-----TATCG------GAAAAGTTGAAATCAGCATA-----TCGTAAC-TGCA-GATT---------TTGTGGGGTGATTTCTTGTTTACAAAATGAAGCATC----ATTTCGCGCATCTTTTTCGctgaaaactgataagaatGAGGTGACAATCAGTGTTCCGAgaaattttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1208264 215 -  4500979 AAATTAACAACATTGTTGC---AAAA--GTTAACTTGTTTTGATTGACTC----TGTATGGCAATTTTTGAT-GTCACGTGATATTACTGTA---------G------GAAAAGTTT--ATGAGCCGA-----TGGAAAT------GATTTTGTGCTGGTTGTGGGgtgatttcttgttttc--gttgaagcttttttgattttgca------TTTCGTTG-AAACTGATAACGATGAGGTGACAATAAGTGTTCCGAGAA-----T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14731886 192 - 20921866 AAATTAACCTTATTGTTGC---AAAA--GTAGAattgttttgat----------tgaatGGCAATCTTTGGT-GTCACGCGATATTACTGTATAAACTATTG-----------------ATGAGCCGATAGTTTAGAAATGTGCA-AG-T---------TTGTGGGgtgatttcttgttttc--atcgAAGTTTT------TCTGCG-------TAAGCTG----CTGATAAGAATGAGGTGGCAATAAGTGTTC------------
i caeSp111.Scaffold630  C 0 I 250
s caePb3.Scfld02_0       2498206 220 +  4147112 AAGTTAACAAtattgttgcaaaaaaa--atagggaTGTTTTGATTGTCCCTAGATGGATGGCAATCTTTGAT-GTCACGTGATATTACTGTAGAATCTATCGGTTCATAAACAGTTT--ATGAGCCGATGAAATGGAAGTGTGCA-GGTT---------TTGTGgggtgattttttgttttc--gttgaAGTTTT------CCCGT--------TATGATG----CTGATAAGAATAAGGTGACAGTAAGTGTTC------------
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17084   173765 811 -   375229 I

a score=4177.000000
s ce10.chrX              4245462 36 + 17718866 GTTGAAAACCTA-----GTCTGATCATTTGATATTAAAATT---
s cb4.chrX               9349144 41 + 21540570 ggggaaaacCAAGAGACGATTAGTCTTTTGATTCCAGAACT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1208479 39 -  4500979 GAGGGAAACCCATAAA-GATTATTC-TTTGATTCTAAAGTT---
i caeRem4.Crem_Contig0  C 0 I 369
s caePb3.Scfld02_0       2498435 43 +  4147112 GAGGGAAACCCAAACA-GATTAGTCATTTGATTTTCTGGCGACT
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I

a score=-1337.000000
s ce10.chrX              4245498 17 + 17718866 CCAAGAACAAAATGGAC-
s cb4.chrX               9349185 17 + 21540570 -TTTAAGTGGAAATAGAC
i cb4.chrX              C 0 I 35
s caePb3.Scfld02_0       2498478 17 +  4147112 TTATGGGTGAGACGAAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=48.000000
s ce10.chrX              4245515 46 + 17718866 AGT---------TGATATTACAAGAAAAAGAGT-------TAAGTAA-AGACATACGGCACGT
s caePb3.Scfld02_0       2498495 61 +  4147112 AGGAGTGTGAAATAacattaaaataaaaataatcgaaGAATAAATAAGAGGAATACTGCAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I
e cb4.chrX               9349202 35 + 21540570 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=-5714.000000
s ce10.chrX              4245561 162 + 17718866 AAAATGATAATTTGGATAAGATAAACTCTGAAAACTGCAAAACAAAGGCGTGACAAAAATTTTGGTTAAA---AAGTTTGTAAAAAAATCAAAATTTAA-------AAATAGTGCCAGAGGGGAAAATTAACAAAAACCACTTttatggtgtcaaaattat--caaatgttata-
s cb4.chrX               9349237 137 + 21540570 AAAATTATAACTT------GATGgtatc--gaaaaatcgggtcaatg--------aaaaataaatttatagTGAACATTGTTGAAGATCCTAGTACAAA-------AACTATCGTAACCTAGAAGTATT---------TTATT------TTCCGGCATTAttatttcatttgaaa
i cb4.chrX              I 35 C 0
s caePb3.Scfld02_0       2498556 137 +  4147112 -------TGAGTG------CATGGAACT--GAAACTGTGAAGCAGT---------AAAATTACATATAAatgtaaca-----gaaaaaactaaCATTGAGCAGTCGAATTGTCAGAGCCGAGATGTATTAGTCCAAGCTCCTT------TGTCAGAATGAT--CCTAAGTTGTA-
i caePb3.Scfld02_0      C 0 I 35
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=410.000000
s ce10.chrX              4245723 123 + 17718866 ttaaaacttttcaattttttttttgaaaaattgttattggaagttattgtagcgataactgtattcttgacatttttaag--aaaactaaagc-----actctcgcatgtttgaat-tcttacaatggttt
s cb4.chrX               9349374 109 + 21540570 attaaaatcttaTACTTGCTTCATAGAGAATTGCTA-----------------AAAAACTATGATCGTTAGACTTTCGGGCCAAAACTGATGCCTATTAAGCTCG-ATATTTAGATGTTTTA----GGTtt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2498693  35 +  4147112 I
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=-21406.000000
s ce10.chrX              4245846 394 + 17718866 ------------------------------gatatt---------------aattttcgacacaaaagttgatcataaaattttaag---gaa--aatgttttc-----ttgaccgatga-------cttccaaaaaagtggcaaaacttagtgattatcagttattggaacataatatgaaattttt-attttggcaccatagaagtgatttttaataattttcccactggcgctacAAAATATTATATCAAAATGTTGTTGCTGAAAAATGTTCTGAATGAAATTTTCGAGGTGCTAGTGGTACCTCATAAAACATTTTTGTTGCTAATTTGAGGTAAAATATACATTTTTCAAA-----------GTTCTGAAA--TTTTCGACGAGCATTAAAAAAAACATTCAAAAATTGAGGTGCCAACTTGTTGTTACTACATTTTGTTGGACAATTT----------------TATCGAAAAATGGTT
s cb4.chrX               9349483 424 + 21540570 gcatttcattttttacttcTCCAAATGTAGGTTATTTGGAACTGGTGTTCAAGCTTTAGGGGCCAAATTACC----AGGGTTTTAAGTGTGAATTAAAGCTTACCAGATCAATCAgtaga-------tatcgaaaaatatgCCTGAA---AATGAATATCATTT-------CAAGTTACGGTGATTTACATTCAGACACCTTTG--GCCATTGCTACTagcatttttcttctctttttcaaacatttt----------------tggaaactgattttaat----ttttaaaaatttaaatag----cTATAGAAC-TATTCATTTTGAGATCAGAAAACAATTAATATCCCAAACACAAAACAATAGATATTAAcg--ttttc------caaagaaaaaaatttcagaaaatctgagaatt--tttgtcattcagaaatttc----aaagtttttttctaatttttttcctggagCAAAATGACT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2498728 248 +  4147112 ------------------------------GATATT---------------GACTTTA----CAACATTGCA---------TTTGACTGTGAA--GAATCTTG------TAGTCCGAAGATTTAGGTTACAGAATAATAT-----AA---AAAAGATGGCAT-----------------AGTGGTCTG-GTTTAGA----------------------AGTat----------tcttgagaaaatt--------------------gaaaatgtgttgCAT----TTT-----GTTTCAACCA----ATATGCAAC----------------------------AGTATCTCTCAC------------TTCCTAATGtattttt------taccaaaaaaaatcatgaaagaCTTGTGTATTGATTAAGTAGGTAAAGATTAC----GAATATCT-------------------------------
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeSp111.Scaffold630  14732078 250 - 20921866 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=-12549.000000
s ce10.chrX              4246240 105 + 17718866 CAAGTTAAAATGTTAATCTTCCAAATTTTT---------CTCAGATGA----------------------CATC--CGAAATATATTCTGCAAACTTTC------ATATCCAGA-------CAACAACCGGTCCCCCGTATTTTCGGAAGA
s cb4.chrX               9349907 104 + 21540570 ---------------AAATTCTGAATGTGCCTCAATGTGTTTTTCTGT------------------TCGCgatcttccaaaa-ttttc--gattttgtcaGAAACATGTGTGA--------TAAAAACCGGGTCCCCTCCAGATGCAa---
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold630  14732328 138 - 20921866 CGGGCTAACATATGTACCTTCCAAATTTGT-------TACCCTTATTATGTTtcaaatatctgaaattagCATCTGcaaacaattttcttcattttcccattaaaaaatcccaaatttAGACGGAAACCGG----TCGCACAATTAAAA--
i caeSp111.Scaffold630  I 250 C 0
s caePb3.Scfld02_0       2498976  76 +  4147112 ---------------------TGAGTTCGT-----TGTGTTCTTCTTA-----------------------ATC---------TTTTCCTTATGTTGTC------AAGTCCTAGAC-----CAAAAACCGG----CCTCCTtgtcaaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I
e caeRem4.Crem_Contig0   1208518 369 -  4500979 I

a score=10944.000000
s ce10.chrX              4246345 188 + 17718866 ---------TTGCGAATTTC-TCTCTCAAT--TTTATCTTTTCAATCCCTGC-TGCCAACAACACAACACACCACACGTGTTGCCTTTTGTTGCCG---------------A--TGAAACCTGATAA-ATTTTCAATGGACTTTT-ATCCAACACTTTCACACATTTGTTATAGTTTCAGGTTTTTTCATGTGTTTATGTCT-TTATCGGCAGCAGTCACC
s cb4.chrX               9350030 180 + 21540570 ---------ttttcatttttattttcttttcattttccctcCGAAGCATTG---GTC-AC-----------CCAGAC---ATTTACATTGTTGCCA-------CCTGCC--ACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACAC--TTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACA-Ctttca--
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   1208887 162 -  4500979 ---------TTgccactttt-tcttctttc--ttttctctttgatGCCTTGT-TGTCAAC-----------CTAGAC---ATTCATATTGTTGCCAG-----TCCTACa--a--aaaaaCCTGTTAG-ATATTCTTTGGACTTTCAATACAACATTTTCACACATTTCCAGTCTGTTTATAT---------------------CCATCAACA-CCTTTATC
i caeRem4.Crem_Contig0  I 369 C 0
s caeSp111.Scaffold630  14732466 148 - 20921866 ACGCATACTGTTTCAC--TT-CTTctatct--tttatttttaaaacccACTT--GCCAAT-----------CTAAAC---ATGTCTATTGTTGCAAGTGCTatcctatc--a--aaaaacctgTTAC-ATATTCTTTGGACTCCCCAATCAACATTTTCACACATT-----TCGGTTGG------------------------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2499052 178 +  4147112 atgcaaatttcttcgctttt-ctttttcct--ttttctttttgaagccATCTCCGTCAAC-----------CTAGACA-GATTCCTTTTGTTGCCAGTGCCATCTTCTTCAG--AAGAACCTGTTAC-ATATTCTTTGGACACGcaaatcaacattttcacaCGTTTTTAGTCTGTTTA------------------------TCCTCAACA-CCATCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   173765 811 -   375229 I

a score=458274.000000
s ce10.chrX              4246533 876 + 17718866  
s cb4.chrX               9350210 931 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1209049 870 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14732614 872 - 20921866  
i caeSp111.Scaffold630  C 0 I 59
s caePb3.Scfld02_0       2499230 865 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   174576 902 -   375229  
i caeJap4.Scaffold17084 I 811 C 0

a score=-4443.000000
s ce10.chrX              4247409 51 + 17718866 GCAACAACC-----GAAAGTTTGCGAGGGGAGTAAGGTCCGAAGTAAGGTCCGCAG
s cb4.chrX               9351141 43 + 21540570 GTAAGGTCC-----AAGTGTTCGATGGGTCAGC--------GAGTGAGGTCCGTAT
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   1209919 43 -  4500979 GTAAGGACC-----AACTGGTCGATGGGTTAGA--------GGTTAGGGTCCGTTG
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0       2500095 36 +  4147112 GGATTGACC-----GATTGTTCCTGTGGACA--------------ATGGTCCGTT-
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17084   175478 36 -   375229 ---AGGGCCATCGAGAGTGTTTCGTCTGGGA--------------AAGACCCC---
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14733486 59 - 20921866 I

a score=33127.000000
s ce10.chrX              4247460 151 + 17718866 GAAACAA-------TGAATGAAATGAAGGGATCATAGAT--TATTAAGGGAAACTGATAAGGCACAATGAAAGGCAA------TAGTAAATGATCT--------AAAATAAGTTCATGTTCACATTGACTAATTGGAAACTGAACTATAGTCAGAGGAATAT--------------TGTGATGTC-------ATT
s cb4.chrX               9351196 151 + 21540570 AAAAAGT-------TGATCAGA---AAAGAATCAATGAT--CAAC--GTATCGCTGATAAGAAACAGCTGAATGAaacaaaagaaggaaattttCCTTCTCAAAATAACAAGTTCATCGT----------TCAGAGAAAATGAACTCTAGTC------AGAA--------------TGTGATGTCATGGGGTATC
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1209972 151 -  4500979 TAAAAATTGGGGACTGATTACA---AAGCGATCAATGATTACGTT--GTTTTAAAGATAAGAAACAGCTGAATTAAA------AAGGAAATGATGC--CTTAACAAAACAAGTTCATAGt----------aatgaaaaactgaactttAGTCAAGGAAAAAT--------------TGTGATATC-------ATT
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold630  14733545 137 - 20921866 agaaa---------taatcGCA---AAGGGATCATAGAT--TACT--GCTTCATTGATAAGAAACagctgaatgaaa----aaaaggaaatgatgC--CTT--AACAACAAGTTCATTGt-------------gtaaaaatgaactttaGTCAAGGAAACAA--------------TGTGATATC-------ATT
i caeSp111.Scaffold630  I 59 C 0
s caePb3.Scfld02_0       2500150 144 +  4147112 GGAAATT-------TGATCACA---AAGAGATCATAGAT--TACC--GTTTTATTGATAAGAAACAGCTGAATG-AA----AAAGGGAAGTGATGC--CTTAAAATAACAAGTTCACTGT-------------AAGAAATTGAACTATAGTCAAGGAAACACCTC----------TTGTGATATC-------ATT
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17084   175514 152 -   375229 -AAACTA-------CGCAAGCAAAAAAGGAATCAAAGAT--GAGA-----ATACTGATAAGACATGGATAATTGAAA----CAAAGGAAA-------------AAGAACAAGTCCATGTT----TAAACATTAACCAAAATGAGTCTTGACCAGAGAACGAAAGTCTGAATGGAGTGGTGATGTC-------ATT
i caeJap4.Scaffold17084 C 0 I 970

a score=-16987.000000
s ce10.chrX              4247611 72 + 17718866 AATTCTTGGATTA-ATTTTCTATTCAACTGATTGGAACAGGTTTTTTCGACCAAAGATTATTTATTATCACTG--------
s cb4.chrX               9351347 67 + 21540570 TGAAACCAGAAAA-----TCTACTTTAAGCATTCTGAAA-------TAATACAAGGATAG--TAATAACTATTTACATCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1210123 28 -  4500979 TAAATCTGGaaga--------------------------------------------------aatgtctatttttgt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14733682 63 - 20921866 TATTTCTGGAACaaagtttctatttttggtAACAAAGAA-------TGAGAGGCGAATTA---AATTTCACtg--------
i caeSp111.Scaffold630  C 0 I 59
s caePb3.Scfld02_0       2500294 31 +  4147112 TTAATCTGGAATAATACTTCTATTTTTGGTA--------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I

a score=-5663.000000
s ce10.chrX              4247683 41 + 17718866 AA--------------AAAT-GACCCATAAAGTGTTCGTTGGGTGTTGTCAGAAAG
s cb4.chrX               9351414 41 + 21540570 AAAGTTAAACTTCTGAACatcaatacaaaaaat------------atgtcata---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1210151 23 -  4500979 ------------------ATCATTGCAGTA---------------TTATCAGACAG
i caeRem4.Crem_Contig0  C 0 I 34
s caePb3.Scfld02_0       2500325 22 +  4147112 ----------------ACAT-AACccaaaa----------------tatcagaaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e caeSp111.Scaffold630  14733745 59 - 20921866 I

a score=-1146.000000
s ce10.chrX              4247724 45 + 17718866 CTAGTGGAAAATGTTG------TAAAAAACTAAGTTAATAAA--CTAACTGGT----
s cb4.chrX               9351455 43 + 21540570 ----tggagaaaaatcagatctaaaaaaattaa------atattgtaattgac----
i cb4.chrX              C 0 I 120
s caePb3.Scfld02_0       2500347 35 +  4147112 --------aaataatc------aaaaaaattaa------aaa--aaaaatgacggaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e caeSp111.Scaffold630  14733745 59 - 20921866 I
e caeRem4.Crem_Contig0   1210174 34 -  4500979 I

a score=-482.000000
s ce10.chrX              4247769 15 + 17718866 GATGTTGGAAGTTAC
s caePb3.Scfld02_0       2500382 12 +  4147112 agTGAT--AAGCCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e cb4.chrX               9351498 120 + 21540570 I
e caeSp111.Scaffold630  14733745 59 - 20921866 I
e caeRem4.Crem_Contig0   1210174 34 -  4500979 I

a score=-2137.000000
s ce10.chrX              4247784 52 + 17718866 CGAACGCGGAAACCTTTGGCACCTGGCAACTGTCGGCTGCAGGAAGTACGGC-
s caeRem4.Crem_Contig0   1210208 38 -  4500979 CGATCGGAGGATCTGGTGGTAC--------------CCGTGAGATGGTCAGC-
i caeRem4.Crem_Contig0  I 34 C 0
s caePb3.Scfld02_0       2500394 22 +  4147112 -GAAAACAGAA-------------------------CTGCAAGa-----aaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e cb4.chrX               9351498 120 + 21540570 I
e caeSp111.Scaffold630  14733745 59 - 20921866 I

a score=-7860.000000
s ce10.chrX              4247836 46 + 17718866 AACTTTGCAACAACATGGCATTCAAGTTGTCTAAGCTTA---GATCTTT--
s caeRem4.Crem_Contig0   1210246 18 -  4500979 ---------------------------------ACTTCTCGGGATGTATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14733804  8 - 20921866 --------------------------------aacttCA---------C--
i caeSp111.Scaffold630  I 59 C 0
s caePb3.Scfld02_0       2500416 24 +  4147112 ------gcaagaaaa----------------aaatttca---gatctgg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e cb4.chrX               9351498 120 + 21540570 I

a score=21959.000000
s ce10.chrX              4247882  877 + 17718866  
s cb4.chrX               9351618 1015 + 21540570  
i cb4.chrX              I 120 I 1547
s caeRem4.Crem_Contig0   1210264  707 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14733812  698 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2500440  733 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666  970 -   375229 I

a score=-49500.000000
s ce10.chrX              4248759 473 + 17718866  
s caeRem4.Crem_Contig0   1210971 238 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14734510 368 - 20921866  
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2501173 570 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   175666 970 -   375229 I
e cb4.chrX               9352633 1547 + 21540570 I

a score=-350.000000
s ce10.chrX              4249232 1 + 17718866 G
s caeRem4.Crem_Contig0   1211209 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold630  14734878 1 - 20921866 C
i caeSp111.Scaffold630  C 0 I 30
s caePb3.Scfld02_0       2501743 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold17084   176636 1 -   375229 G
i caeJap4.Scaffold17084 I 970 C 0
e cb4.chrX               9352633 1547 + 21540570 I

a score=248384.000000
s ce10.chrX              4249233 418 + 17718866  
s cb4.chrX               9354180 525 + 21540570  
i cb4.chrX              I 1547 C 0
s caeRem4.Crem_Contig0   1211240 452 -  4500979  
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold630  14734909 447 - 20921866  
i caeSp111.Scaffold630  I 30 C 0
s caePb3.Scfld02_0       2501774 440 +  4147112  
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold17084   176637 423 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=2617.000000
s ce10.chrX              4249651 4 + 17718866 AGGT
s cb4.chrX               9354705 4 + 21540570 AGgt
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig0   1211692 4 -  4500979 CGGT
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold630  14735356 4 - 20921866 CGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502214 4 +  4147112 CGGT
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold17084   177060 0 -   375229 C

a score=100.000000
s ce10.chrX              4249655 1 + 17718866 G
s caeSp111.Scaffold630  14735360 1 - 20921866 G
i caeSp111.Scaffold630  C 0 I 25
e caePb3.Scfld02_0       2502218 45 +  4147112 I
e caeJap4.Scaffold17084   177060 0 -   375229 C
e cb4.chrX               9354709 78 + 21540570 I
e caeRem4.Crem_Contig0   1211696 39 -  4500979 I

a score=0.000000
s ce10.chrX              4249656 750 + 17718866  
e caePb3.Scfld02_0       2502218  45 +  4147112 I
e caeJap4.Scaffold17084   177060   0 -   375229 C
e cb4.chrX               9354709  78 + 21540570 I
e caeSp111.Scaffold630  14735361  25 - 20921866 I
e caeRem4.Crem_Contig0   1211696  39 -  4500979 I

a score=410.000000
s ce10.chrX              4250406 8 + 17718866 AAATTCAC
s caePb3.Scfld02_0       2502263 8 +  4147112 AAACTAAC
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold17084   177060 0 -   375229 C
e cb4.chrX               9354709 78 + 21540570 I
e caeSp111.Scaffold630  14735361 25 - 20921866 I
e caeRem4.Crem_Contig0   1211696 39 -  4500979 I

a score=186.000000
s ce10.chrX              4250414 7 + 17718866 AAAAATA
s caeSp111.Scaffold630  14735386 7 - 20921866 aatatta
i caeSp111.Scaffold630  I 25 C 0
s caePb3.Scfld02_0       2502271 4 +  4147112 ---ACca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   177060 0 -   375229 C
e cb4.chrX               9354709 78 + 21540570 I
e caeRem4.Crem_Contig0   1211696 39 -  4500979 I

a score=-857.000000
s ce10.chrX              4250421  8 + 17718866 -TTTAATTC-
s caeRem4.Crem_Contig0   1211735  8 -  4500979 -TTCAATTC-
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold630  14735393 10 - 20921866 TCTAACTTTG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502275 10 +  4147112 atttcctttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   177060  0 -   375229 C
e cb4.chrX               9354709 78 + 21540570 I

a score=1000.000000
s ce10.chrX              4250429 1 + 17718866 C
s cb4.chrX               9354787 1 + 21540570 C
i cb4.chrX              I 78 C 0
s caeRem4.Crem_Contig0   1211743 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735403 1 - 20921866 C
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502285 1 +  4147112 c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   177060 0 -   375229 C

a score=84407.000000
s ce10.chrX              4250430 93 + 17718866 AGAACACCCGAAGATTCTGGTCAGTATATTCAAAAGTGTGTTCATATGGCTCGCACAGGTCAAATCGGTGCACCAGCGTGGAGTACAAGTGGT
s cb4.chrX               9354788 93 + 21540570 AGAACTCCTGAAGACTCTGGTGAGTACATCCAGAAATGTGTCCACATGGCTCGCACCGGACAGTATGGAGCTCCGTCCTGGAGCACTAGCGGt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1211744 93 -  4500979 AGAACACCAGAAGACTCGGGAAAATATATCCAGAAATGTGTTCACATGGCGAGAACAGGGCAATACGGAGCACCATCGTGGAGTACTAGCGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735404 93 - 20921866 AGAACTCCAGAAGACTCAGGAAAGTATATCCAAAACTGTGTTCACATGGCTCGAACTGGGCAATATGGAGCGCCAGCGTGGAGTACTAGCGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502286 93 +  4147112 agaaCCCCTGAGGACTCAGGAAagtacattcaaaaatgtgttcatATGGCTCGAACAGGACAGTATGGAGCACCAGCTTGGAGTACAAGTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   177060 93 -   375229 AGAACCTCAGAAGACTCGGGCAAGTATATTCGAAAATGTGTCCAGATGGCCCGTAATGGACACTTTGGAGCACCTTCTTGGAGCACAAGCGGT
i caeJap4.Scaffold17084 C 0 I 48

a score=-13148.000000
s ce10.chrX              4250523 36 + 17718866 ATAGTCACAAACTTGCAAAAC-----CCGGAAAA-----AAAATCA
s cb4.chrX               9354881 39 + 21540570 g-attcaaaatgttccataACTAATGCTCATCAG-----AAAATC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1211837 39 -  4500979 T-------AGTGTTATCCATCTCACTGTGACAAGcgtgaaaaacca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735497 34 - 20921866 A--ATCAAGGGAGTTTGTGTTGAAtgc--aattg-----aaaa---
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502379 34 +  4147112 -------ATGAGATTTGAAtcggatttcaaaaag-----aaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   177153 48 -   375229 I

a score=34081.000000
s ce10.chrX              4250559 87 + 17718866 AA----AATTCAGATTTGCTAGCCCGGCTCAATTGGATCAAGTGGCGTCGTCTTGGAATCGAGCCGATTGCCTA------AACAAACTCTGTGTATG
s cb4.chrX               9354920 91 + 21540570 ------ACTTTAGACCTACTAGCGCGTCTCAATTGGATCAAGTGGAATCGCCTTGGAATCGAGCCAATCGCATGACACTTAAAAAACTTCCTACATG
i cb4.chrX              C 0 I 1324
s caeRem4.Crem_Contig0   1211876 86 -  4500979 aaacataTTCCAGACTTGCTGGCTCGTCTTAACTGGATCAAGTGGAGACGCCTTGGCATCGAACCGATTGCAT---------AAATCTGACTTTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735531 76 - 20921866 -----tgtttcagatcTCTTGGCACGTCTCAACTGGATCAAATGGAGACGTTTGGGAATTGAACcgatttcttg--------aaaacac--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502413 74 +  4147112 ttaattattgTAGATCTTTTGGCACGTCTTAACTGGATAAAATGGAGACGTTTGGGAATCGAGCCTATCGCATG-----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   177201 84 -   375229 ----attttttagatTTGCTCGCCCGATTAAACTGGATAAAGTGGCGGCGATTAGGAATCGAGCCCATTTCTTGACAGTTCGTGACTG---------
i caeJap4.Scaffold17084 I 48 C 0

a score=-30319.000000
s ce10.chrX              4250646 113 + 17718866 CGTAAACGGCAGAAAGCAAAATACCTTTTA------ATTGTATTTT---------------CCACGAATACAACT--CATGATTTTCTATC---------------TTTCATT--------TCAATAAACAT---------ACTGATTACATTTATTGTGC--CATTTC-----------------------T
s caeRem4.Crem_Contig0   1211962  60 -  4500979 ----------------------------CC------ATaaagattt------------tctgaataaatgaGAGT--TATggtatttcatt---------------tttatgt--------------------------------------------------tgtttc--------------------tttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735607 113 - 20921866 -----acggaa------acaagaaatttcc------atcgaatttc--------------------attgaatctcacattgaattttatt---------------ttctatt--------tttataaataa---------agtagttgatttgaataatc--catttt---------ctaaaattcaacTCT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2502487 151 +  4147112 -----------------ACTGGAACTTTTCATGaagatcaattttttgtgttccgttatct-aagaaatgaaaag-atatTGGACTCAttt---------------ttttAACACAACCAATTATTGAATAA--------GACCATTTGGTACGATTACTCGTCATTTCACTTCTTCGCCGACcgtcaatttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   177285 112 -   375229 -----------------------GATTTTC--------TGAATAAT---------------GCATAATAACAAAC--AATGGAACATTATTTATATAACGTCATAGTTTcact--------ttcaaaaataaagGTTCTAaataatttgcattttttgttc--caTTTC-----------------------T
i caeJap4.Scaffold17084 C 0 I 4158
e cb4.chrX               9355011 1324 + 21540570 I

a score=-21621.000000
s ce10.chrX              4250759 261 + 17718866 TTGAAAAACCTTTAAAAATC--TTACAAAACAC---ATCTAGATTTT--ATCGTAAACTCTGG--------AACC-T---AAAATTT-------------TCCTTTTCCAAAGC-CTCAATTTTAAAGAAATTT---CAACT-----AGGAAATGTCATG---------CGT-GACTCCACCTACATATATAAA---CTTCGAATTCTTTTTC--TGACTTTGATATTCTTGATCTTATCATCTTC-------------------------------ACGTTTCTGTTTCATTGTACTTTT---TTTTTGAAATTAGAGAATTTTTGAAATTCACACGTT---TTTCCACAAAA-------------
s caeRem4.Crem_Contig0   1212022 314 -  4500979 tta------ttacaaaCTTT--CAACAAAATCCAATCTTTTGATCTT--GTTG-GAACTAAAATTTCAACTAACA-TGTGATAATTTACAGCTTC-----TGTTTTCTAAAACTACTAAATAATAACAGCCCTT---CAATTCTGTGAAGTAATGTAAAGGTTGCTTTTCGTAAACCCCGCCTAG-----TTAC---TTTCCAAA----------TGGCACGCATCCCATTgatctcttcatttttcaaatttgacagCTATACAAAACtaattttagcattttt---------atctttg-----cttcaaaaaaagataaagtt-AGGTTCTCCCACGTATTTTTAGTTGCATATTCGCACGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14735720 309 - 20921866 TTGAGCA--AAGTACActccaacaaaaaaatgt--tcatttgaTTTCCAGTTG-GAACAC-AA--------AGCA-TGTGAAAGTTTCAACCTTT-----CCCTTCAGCAGAAT-CCGTAAAATTAAGGCTTTTCAagtattttcaaagaaaatgcCATATTTACTTTCTAT-TGCCCCGcccaa------aacattttttgaaagtttgatT--CGGCACGGATTCTTTTgatctcttcatttc-----------ttccatgCAAAATCTTCGAAAGAACTTCTTTGCCTCCTAACCCGGAACTTCTCAAAATAAGGGTCTAGTT-ACGTTCTCACGAG---tttatatcaaa-------------
i caeSp111.Scaffold630  C 0 I 114
s caePb3.Scfld02_0       2502638 283 +  4147112 ttg------gattttactTT--CTCGAAACtgc--tcttttgattttt-gctg-aaactCGAG--------AGTAGCGAGAAAATTCTGATTATTCCAAACCTTTAATCAGAAT-TTATATAATAGCACCCTTT---GTTTTCTGCTGAGAAATGCT--------------T-TGCTCCgcccaa------aac---ttttgaagaatgcATTTCCAGAACGAATG-TTTTGATCTCTCTAATCCC---------ACGCTCTGAACGAGTATAGATAGGTTTTCCTCAAC----AATTTTG---TTCCTAAAATGCAAGTATAG---AAATTCTCACGTG---TTGAACTTGGA-------------
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I

a score=-5182.000000
s ce10.chrX              4251020 78 + 17718866 -------------------TTCA-----------TTTTCAGTTCCATTTCGGTTCTTACACAAAAACCAATGAAACTACTTTTATACAA-ATTTCTGCATAGGTTTTAT----------------
s caeRem4.Crem_Contig0   1212336 89 -  4500979 ---ATGCTTTGGAACACACGTCAGA---------TTTACTGATCC--------TTatacagagaaaaaaac------------ata----ttgtTTGATTGCTTTTTATTCTCCTTAATGCATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2502946 95 +  4147112 TTCATA-TCCagaacaaaactcaaaatacatatttttgctttttca-------ttctaaacaaaaaaaaaca-----------ataaaacctGTCTTAGTAACTTTAATTCTTT-----------
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeSp111.Scaffold630  14736029 114 - 20921866 I

a score=25702.000000
s ce10.chrX              4251098 200 + 17718866 ---------------CGCGTGTCTTG---TTGATGCCATATTCTGAAACCAACAAGTTTTGCGATCAAAAATGAGCGTTTCATAAGAAAGAAAATGCG-AAAAATGACTATTAAGAAAGCGTTATTATATGATTAAACTGCCACCGATAACGACTTCCATTCCGCAAAATAC---------CTTACCCGCGCAACTTATAATAAAATCAGTTCCAAGTCTAAAACAGA
s caeRem4.Crem_Contig0   1212425 207 -  4500979 ACATGACTTGTAAACCCCATTATCCTGATTTGACACCAGTATC--AAACCA----------CTATCAAAAATCAGCATTCGACCAGGAAAAATGTGCGCGAAAATGACTATTAGCGCCGTATGGCAATATGATTAAATTG---------ACGACTTTTATTCCACAATGgaaaggaaattttttgacgGCTCAACATATAATCCGATATGtttcttttctggaaaaga
i caeRem4.Crem_Contig0  C 0 I 308
s caeSp111.Scaffold630  14736143 185 - 20921866 ---------------CCCGTGTTGCA---TTAACACCAGTATC--AAATCA----------AGATCAAAATCGAGTAGCTAAACGAG-AAAATGCCAGCGAAAATGACTATTAGGGCGGTACGGCGATTTGATTAAAGCGCCAACAAAAACGACTTCTTTTcctcaaagaaaaaag-----tttgacgGAGTTATTCATAATTCGATCTCATGCATTTGGT-------
i caeSp111.Scaffold630  I 114 C 0
s caePb3.Scfld02_0       2503041 192 +  4147112 ---------------CTTATGCTCCG--TTTGGCAGCAGTATC--AAACCA----------CGATCAAAAATGAGCAGTTGACCAGG-AAAATATGCGTGAAAACGACTTTTAAGGCGGACCGGCGATTTGATTAAATTGCTGGCAATAACGACTTCTATtccacaaagaaaaaa------tttgacggCATAACTCATAATCTgatctgtttcattttctccctaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I

a score=-2328.000000
s ce10.chrX              4251298 65 + 17718866 TTTCATTTTTTCACGGCTTCCAGTATCCGCCTTTG------CCTGCACTTTTTCGAGCAAGCCAATTTTAT
s caeSp111.Scaffold630  14736328 37 - 20921866 -TATTTCTTTGGAAA--------------------------TTCGCGCGTTTTGT-----GTCAGTTGT--
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2503233 66 +  4147112 acacttttttgataggcatagttttttctccttttgctctttatgcccttttttt-----gcaaattttat
i caePb3.Scfld02_0      C 0 I 434
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeRem4.Crem_Contig0   1212632 308 -  4500979 I

a score=-1757.000000
s ce10.chrX              4251363 411 + 17718866 GACCACCTCGTGGTA-TTCTGCATAACTCGACACA--ACAATAAATTATAAAGTTTGTTGTTTACATTGTTTTATCTTACTTTTTCAGTTTAACTGATATTTCTGAGCATAATATTTTCGAGTAATATTAAGTTTGTAAAGTTTAGTTTTTAATACATAATTGTACTTTAACAATTCTTCTAAAAAAAGAGAGTTCATACAGAGCAACTGTTAATACTGTAAATAGTAAAGCAATTGTATGTGTAAATGTAGGAAA----ACGAATCTTGTTTGCTCATATCATTTGAAATCATCAGATTTTCAAAATATCACTCAAAAAGCTGTGTATTATTCTTTGTTCACATGAAATCTGGAATCTGCCAACGCAAAATGAGTAACAAGAAAAATTTTGGGTGCGCGTCTATAAGCTTTCAGAAA
s caeSp111.Scaffold630  14736365 310 - 20921866 -----CCTTTTGATAGTTCTGAA-------ACATGTTACTTTGAATTGAACGGTTC----TTTTGAAtg----------------caatttaaaaaataattcctAGC-------TTTC---TAGCTTGatatttatcaaaattcattttt---------ttgttttt----aatccTT--GAGATACCAGTATTCCCattgttca----tttttactGTT--TGATATAACAGTTGAATA---AAACGCTGAACTTCttatgaaacttttt--cttataCTTTTAGTTTgcatta---tttcaaaaaataatc---ggAGTGATTTATTGTTCCGTCGTcactagaaa---------------------------aagaagaataaat-------cAAATCCGGAAGCTTTAAAAAG
i caeSp111.Scaffold630  C 0 I 193
e caePb3.Scfld02_0       2503299 434 +  4147112 I
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeRem4.Crem_Contig0   1212632 308 -  4500979 I

a score=0.000000
s ce10.chrX              4251774 246 + 17718866 AATCCTGCATGAAACTAGGATTTTCTCCTGTTTTACTTTTTTTTTCTAAGAATACTTTTCATCAAGAAAAGTAAATGGTGAGAAACACTAGAATAACTTCTTGAGGAAATCACTGGAAACTTAAAGGTGCACACGCAAAATTTTCCTTTTTTAAAACCACCGCATATTTCTTTGGAAAGTTTTTTTGTTTATTGAATGTAAACAGTACGACGGTTGCGGTATAGTTATAAGTTATAGGTCCGAGCA
e caePb3.Scfld02_0       2503299 434 +  4147112 I
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeSp111.Scaffold630  14736675 193 - 20921866 I
e caeRem4.Crem_Contig0   1212632 308 -  4500979 I

a score=-1175.000000
s ce10.chrX              4252020 182 + 17718866 GGTGTTCAGACTCCGTTCTCTAATATTTCTTTAAAGTATTATTTTTCACAAGTGTTCCAATAG---AAGTGGAAACAATAAAAGCAATGAAAAATATGGGGATAACAAGTCACTTGGGAATTCACACTAATGTATCACCTTCTAAGAAAAAAAATCACATAACAACTATACAGTTTCCACTTATT
s caeSp111.Scaffold630  14736868 104 - 20921866 AGTGTTC-----CCGATCT-----ATTGCTCCGAACCATTGTTTGGCCCA----TTTCAGTGGTTTACGTGACAACAATAAAA----------------------CAAGTTTTCT---AATCTGAGTACATGTagaacctttt------------------------------------------
i caeSp111.Scaffold630  I 193 C 0
e caePb3.Scfld02_0       2503299 434 +  4147112 I
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeRem4.Crem_Contig0   1212632 308 -  4500979 I

a score=-1980.000000
s ce10.chrX              4252202 90 + 17718866 AACTATTTTCATAC----TTATTTAGTTTCGTGTTATAGTTTTCATAGTTTTTT--------AATTTGTATTAAC-ATTACCAGAAACTTCACTGCACCATAA
s caeRem4.Crem_Contig0   1212940 93 -  4500979 aattATTGTTCTACTGAACTCTGTGTTCTCCTTTTCtagtttcaatgattttctcAACCGTAAACTTCAACTAACTCTTA--------TACACTGCCACCT--
i caeRem4.Crem_Contig0  I 308 C 0
s caeSp111.Scaffold630  14736972 77 - 20921866 ------------------tttcaaactttcttcttctttttttgaccaACTCATGAAGCATGAATTTGCTCTTCTGATCA--------TTCCTTGCATCCAAA
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2503299 434 +  4147112 I
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I

a score=-588.000000
s ce10.chrX              4252292 13 + 17718866 -AACTTAAC--ACTAC
s caeRem4.Crem_Contig0   1213033 16 -  4500979 TTTATTAGTCGATTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2503733 13 +  4147112 -aaactcAT--ACTGC
i caePb3.Scfld02_0      I 434 C 0
e caeJap4.Scaffold17084   177397 4158 -   375229 I
e cb4.chrX               9355011 1324 + 21540570 I
e caeSp111.Scaffold630  14737049  0 - 20921866 C

a score=-705.000000
s ce10.chrX              4252305 16 + 17718866 TTTTCTATTCAATATT
s caeRem4.Crem_Contig0   1213049 12 -  4500979 Taattc----aaaatg
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  14737049  6 - 20921866 ----------AATATA
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0       2503746 16 +  4147112 TTATTTAATAAGAATG
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084   181555 16 -   375229 ttttctagacagaaaa
i caeJap4.Scaffold17084 I 4158 C 0
e cb4.chrX               9355011 1324 + 21540570 I

a score=110241.000000
s ce10.chrX              4252321 151 + 17718866 ATTTC---AGATT----ATGCCGGCTTTGCAATGGTTTTTATTCATTTCCAGTTTAATTTCAATTTTAATTTACACTATGATCGTTTTCACTTTAAAACGTCATCGATCAAATGCTCTACTTGGCGGTTCCTTTTTTAGAATTGTGGAAATGCAGGTA
s cb4.chrX               9356335 155 + 21540570 atttc---agatacCCAATGCCATTTCTACAATGGTTCCTATTTCTATTCTGCTTGATCTCAATGCTCATATATACTCTCATTGTTATCACTCTGAAGAAACATAGATCAAATGCACTGCTTAGCGgatcatttttccaaattgtcGAGATGCAGGTG
i cb4.chrX              I 1324 C 0
s caeRem4.Crem_Contig0   1213068 155 -  4500979 CTTAC---AGATCCATCATGCCTTTTTTACAATGGGTTTTGTTCCTATTCTGCCTTGTTTCAATACTTATTTATACATTGATAGTTATCACCTTGAAACGCCATAGATCCAATGCTTTGCTTGGCGgatcttttttccagattgtcGAGATGCAGGTA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold630  14737062 155 - 20921866 atttc---agtttcaaaatgccATTTTTGCAATGGGCTCTCTTTTTACTTTGTCTCATCTCAATTTTAATATACACACTGATTGTTATCACCCTCCGACGACATAGATCAAATGCACTTCTTGGCGGATCATTCTTTCAAATCGTCGAAATGCAGGTA
i caeSp111.Scaffold630  I 7 I 75
s caePb3.Scfld02_0       2503769 155 +  4147112 ATTTC---AGACTCACTATGCCTTTTTTACAGTGGttacttttcatattttgtgttATATCTATTCTTATCTATACTCTTATTGTTATCACACTGCGAAAACATAGATCAAATGCTTTACTTGGGGGATCTTTCTTCCAAATTGTTGAGATGCAGGTA
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084   181571 157 -   375229 -tttccagaaattcATGATGCCATTGCTGCAGTGGGTTCTATTTTTATTAGGTCTTATTTCTATAATAATTTATACACTGATTGTGATAACACTTCGACGTCACAGATCTAACGCTTTACTCGGCGGATCTTTCTTTCAAATTGTTCAAATGCAGGTA
i caeJap4.Scaffold17084 C 0 I 348

a score=-15726.000000
s ce10.chrX              4252472 70 + 17718866 --------------------GATCTTTGAAATATAAGTAAACATCACACTTGATCAGAAATTTCACCAGAAAGAA-------AATTATATTATGGAG-
s cb4.chrX               9356490 28 + 21540570 ---------------------------------------AGTATC-------------AACTT------------CTTTTCAGATCTCCTT------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1213223 74 -  4500979 TAACC----ATAGAAAATGTGATC----AACCGCATACTGGTTTC-------------AACTTAAT---AAAAAACCTGTGTGATAGTTTTGATGAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2503924 80 +  4147112 --ATCTTATATAGAAATGCCGgcc----gaacagaaaaaaacttcccg------AAGAAATTTAATC--AAAGAACCGGT--GACTTTCTTCTAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   181728 348 -   375229 I
e caeSp111.Scaffold630  14737217 75 - 20921866 I

a score=487.000000
s ce10.chrX              4252542 18 + 17718866 AAATATCAAAAGATTA----AT
s cb4.chrX               9356518 12 + 21540570 TGAAATCAAA----------TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1213297 22 -  4500979 GGAGATCAaaagatcaattttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14737292 18 - 20921866 AACAATCAAGTTGTCA----TA
i caeSp111.Scaffold630  I 75 C 0
s caePb3.Scfld02_0       2504004 14 +  4147112 ----ATCAAAAGATCA----CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   181728 348 -   375229 I

a score=119607.000000
s ce10.chrX              4252560 159 + 17718866 TTTCAGTATTATGCGGAACTATTTTTCTTCGTCGAATTTTCAATCACCATGCGCTTCAGAAAATATAGCTCGCTTTATGCATTTTTCGAGCCAGACACGGAATTTCACGGTATCATTCCGCGTATTGTGTCTGGATTTCATTATTATATTAAGGTAAGG
s cb4.chrX               9356530 159 + 21540570 TTCCAGTATTATTCTGAACTGCtttttttCATCGAGTTTTCTCTCACAATGCGGTTTCGTAAATACAGTAGcctttattcattttttgagcctGACACAGAACTTCACGGGATAATACCAAGGCTGGTTTCCGGTTTCCATTATTATataaaagtgaga
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1213319 159 -  4500979 tttcagtactacTCGGAAGTGCTTTTCTTTATTGAGTTTTCAATAACAATGAGGTTTCGAAAGTACAGCAGCCTATACACGTTCTTTGAGCCGGATACGGAGCTCGTTGGAATAATACCTCGATTAGTATCTGGTTTTCATTATTACATTAAAGTAAGA
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold630  14737310 159 - 20921866 TTTCAGTATTACTCGGAAGTGTTGTTCTTCATTGAGTTCTCGATCACAATGAGGTTCCGGAAGTACAGCAGTCTctactcatttttcgaaccAGATACAGAGTTTGGTGGCATCATTCCAAGACTTGTTTCGGGTTTTCATTATTACATCAAAGTACGA
i caeSp111.Scaffold630  C 0 I 9
s caePb3.Scfld02_0       2504018 159 +  4147112 TTTCAGTATTATTCGGAAGTACTTTTCTTCATCGAGTTCACAATTGCAATGCGGTTCAGGAAATACAGTAGTCTTTATTCGTTCTTCGAACCAGACACTGAGTATGAAGGTCTCATTGCTCGGTTGGTTTCGGCGTTCCATTATTATATAAAAGTGAGA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084   182076 158 -   375229 TTTCAGTACTACTCGGAAGCCATATTTTTTATCGAGTTCTCCATAACTATGAGGTTCCGAAAATACAGTGATCtttacacattttttgagCCGAACACAGAGTTTTATGGAGCTGTTCCCAGAATTGTTTCAGGCATTCATTATTATATAAAAGTAAG-
i caeJap4.Scaffold17084 I 348 C 0

a score=-10837.000000
s ce10.chrX              4252719 39 + 17718866 -----TTGAATTCAAAAATTACATTT----------TTCTATTTTTTCTATTTT
s cb4.chrX               9356700 23 + 21540570 -----AAAAATTTAGCAATGATAATC----CA----------------------
i cb4.chrX              I 11 C 0
s caeSp111.Scaffold630  14737478 21 - 20921866 -----ATtcctcgagaaaaaagaatc----------------------------
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0       2504186 25 +  4147112 -----atgaagtaaataaaaaaaaacattg------------------------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084   182234 43 -   375229 AATGCGAAAATCGGGCGTTCAGATTC----AACAACTTTGACTTTTT-------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1213478 32 -  4500979 I

a score=97382.000000
s ce10.chrX              4252758 194 + 17718866 ATTTCAGATTGTGGTATACATTGGGTATCTAACGTTTGCTCTGAATCGACTCACTTCCGCACTCAATATATCATCATATAACAGTGTGAATATTTCAGTATGAC-ATTAACTTTCA-----------ATACT--TAG---CCCTAGTCTTCTTGA-----TCTGTCAATGAGTTT-CCTTCGTGTGTCATTATCAGTTTCAA--CGTGG---TTTTGCATG--T
s cb4.chrX               9356723 199 + 21540570 AATTCAGATAGTGGTCTATATCGGATACCTGACATTCGCCATGAACCGGTTCACATCTGCTATCAATATCTCTTCATATAACAGTGTGAATGTTTCAGTATGATAATTCTTtca-------------attat--tagaaaaatcagttttctcaa---tttctttctttGAGTTT--TTCCGTGTGTCATTCTTAGTTTTCAGTGGTTG---TTGTGCATG--C
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   1213510 192 -  4500979 GTTTCAGATAGTTGTGTACATTGGATATTTGACGTTTGCATTGAACCGTCTAACATCAGCCATAAACATCTCCTCCTATAACAGTGTGAATGTTTCAGTATGAT-ATTCACTTC-------------ATTAC--TAG---AATTAGTCTTCTAAA-----ACTATCAATGAGTTC--CTCTATGTGACATTTTCAATTCCA---TGTTG---TTGTGCATAATA
i caeRem4.Crem_Contig0  I 32 I 7
s caeSp111.Scaffold630  14737499 191 - 20921866 -tttCAGATTGTTGTATACATTGGATATTTGACATTTGCAATGAATCGTCTTACCTCTGCTCTCAATATATCATCTTATACCAGTGTGAATGTTTCAGTAtgat-attcttttttc-----------attag--tAG---AAATACACTTATAAA-----TCTAtctttgagttttcttttgtgtgactttttgatttc-c---tgTGG----TTTGCATg--c
i caeSp111.Scaffold630  C 0 I 36
s caePb3.Scfld02_0       2504211 189 +  4147112 atttcagATCGTCGTTTATATTGGATATGTGACTTTCGCTTTGAACCGTCTAACGTCAGCACTGAATATATCATCTTATAACAGTGTGAATGTTTCAGTACGAT-GATTTCTTT--------------TTAG--TAG---TTTTAGACTTCTCAA-----ACTGTTCATTAGTTT--TTCCGTGTGACATTTTGAGTTCAA---TGTGG---TTTTGCATG--T
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17084   182277 212 -   375229 AAAACAGATTGTGGTCTACATTGGATACATAACGTTCGCATTGAACCGATTAACATCTGCTCTCAACATCTCGTCATATAACAGTGTGAATACATCAGTATGGT-GTTCTTCTGTATTTTGCAAGTGATTGTGATAG---CTTAGAACTTTCCAAAGACTATAATCTATAGATTT---TTTATGTTTAATCTTATTTTCCT---CGTGTGTTTATTGCATG--C
i caeJap4.Scaffold17084 C 0 C 0

a score=-11415.000000
s ce10.chrX              4252952 36 + 17718866 TTTTCAACCAATTCAAAATTA-------CTCATTACA-AATAAA
s cb4.chrX               9356929 34 + 21540570 CTTTTTtctaatcaaaaattg-------atggttTT---GCAAA
i cb4.chrX              I 7 I 4
s caeRem4.Crem_Contig0   1213709 31 -  4500979 TATGTAGATAAACTGAACTTG-------ACtgtt------cgaa
i caeRem4.Crem_Contig0  I 7 I 1
s caePb3.Scfld02_0       2504411 29 +  4147112 CCGTTTTTAAAGGAGAAATCA----Cacactgt-----------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17084   182489 41 -   375229 --CGCTAGAAATGACACATCAGCTTCAACTTATTTCATAACAA-
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14737690 36 - 20921866 I

a score=271932.000000
s ce10.chrX              4252988 712 + 17718866  
s cb4.chrX               9356967 554 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1213741 638 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  14737726 614 - 20921866  
i caeSp111.Scaffold630  I 36 I 13
s caePb3.Scfld02_0       2504440 627 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   182530 590 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-4045.000000
s ce10.chrX              4253700  5 + 17718866 ---------------------------------------GGAAA
s cb4.chrX               9357521  4 + 21540570 ----------------------------------------GAAA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   1214379  4 -  4500979 ----------------------------------------AAAC
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       2505067  5 +  4147112 ---------------------------------------AGAAA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084   183120 44 -   375229 GTATTCTGCGGCACGCGCATAGTTGTTCTTaacttttcaagaaa
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14738340 13 - 20921866 I

a score=-2690.000000
s ce10.chrX              4253705  9 + 17718866 AAAATTAAT--------
s cb4.chrX               9357532  9 + 21540570 CGTAATCAT--------
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1214390  5 -  4500979 caaaa------------
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold17084   183164 17 -   375229 aaaaatgttcattcAAT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2505072  9 +  4147112 I
e caeSp111.Scaffold630  14738340 13 - 20921866 I

a score=-3558.000000
s ce10.chrX              4253714 16 + 17718866 CTCATTCGACCTTCTA-
s cb4.chrX               9357541  7 + 21540570 ------CATAATC----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14738353 16 - 20921866 ctcACTTATCACTCTT-
i caeSp111.Scaffold630  I 13 I 6
s caeJap4.Scaffold17084   183181 16 -   375229 -TCTATTagagtattta
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2505072  9 +  4147112 I
e caeRem4.Crem_Contig0   1214395  0 -  4500979 C

a score=59708.000000
s ce10.chrX              4253730 216 + 17718866 G----AACAAACACATTAAATATATAAGA------------------------GTGTTTTGCTGTG-------------------------------------------------C---------------------CCAAACA-------------------------GCTGGTGAAAC---TTTAATAA--------------------------TTTTCAGATATCCTATGATTGATCTTATGTATTCCCATTTTCCATGGGCGTTATTAGTCACGTCGGGAGTTCTGAGGAAGCAAATGATTTACGATACAAAAATTTTCCTACGAACGTAATATTTATCTGGTGAAGGGTAGCATCTTTCAAA
s cb4.chrX               9357548 249 + 21540570 -----AAATAAATGTTTTACcaaagaaaa------------------------ataatcttCGGTGACACT--TAATAA------------------------------CATTTACACACTTAATAACATTTTACTACTGAGTA---------------------------TAttctaat---ttcttt----------------------------tttccagttatCCCATGATTGATTTGATGTATTCACACTTTCCATGGGCATTATTAGTCACATCAGGTGTTTTGAGGAAGCAGATGATATGCGATACGAAAATCTTCTTGCGAACGTAAAGTACATAATTCAGAAGACTAAATTTATTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1214395 216 -  4500979 -----aactaatacTTTTTGTCACCCAAA------------------------ACAATCTTTGGTG----------CAA------------------------------CGTTTCT---------------------CTGAATA---------------------------TGTCCTAAT---TTCTTT--------------------------------CAGATATCCAATGATTGACTTAATGTACTCTCATTTTCCATGGGCACTATTAGTCACTTCGGGAGTGTTGAGAAAGCAGATGATATATGATACCAAAATATTCTTACGAACGTAACAATtatctttcaaaaagtgaCACATTCcgtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14738375 184 - 20921866 ----TAACA----------------AACA---------------------------------AGTG----------------------------------------------TTAC--------------------GTTGTAta----------------------------ctttgatt---ttcttt----------------------------ttttcaggtacCCTATGATTGATCTCATGTACTCGCACTTTCCATGGGCTTTATTGGTTACTTCCGGAGTTTTGAGGAAACAAATGATTTACGATACGAAAATCTTCTTGCGAACgtaaaattta---taaaaag---gaaaagaggtgta
i caeSp111.Scaffold630  I 6 C 0
s caePb3.Scfld02_0       2505081 227 +  4147112 GAACTAACACATGCTTTTT------AACA------------------------GCAATCTGTGGTG----------------------------------------------TTAT---------------------TCGAATAAAC-------ATGAAG---------AGTCTTTGATTAACTCCCGT----------------------------TTTCCAGATATCCTATGATTGACTTGATGTACTCTCACTTTCCATGGGCATTATTAGTTACATCAGGAGTGCTGAGAAAGCAGATGATATACGATACGAAGATATTCTTGAGAACGTAATATTTAATTTCCATAGCGTGATACTCGGTATG
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084   183197 343 -   375229 -cggtaacCACCTCACTGAATGACGCACACCATAAACGAGTTTTCGCAATCTAATAATTTTCTGTTACATTTCTAACAAAATTACATTCAATCGCCCcctttgtttgtttgtttat---------------------ttgtttattcTTTTTCTAGGAAAACTAGCTGTGTTATGTGCAC---TTCTTCcgattaaaataataaaagattAAGGGGTTTTTCAGGTATCCAATGATTGATTTGATGTACTCACACTTTCCATGGGCGTTGTTAGTGACATCAGGAGTTTTGAGGAAGCAAATTATTTAtgatacaaaaatttttttacgaacgtaatatttaattgttttattgttgttattttcaaa
i caeJap4.Scaffold17084 C 0 I 712

a score=-433.000000
s ce10.chrX              4253946 6 + 17718866 AAATGT
s caeSp111.Scaffold630  14738559 5 - 20921866 tag-at
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2505308 0 +  4147112 C
e caeJap4.Scaffold17084   183540 712 -   375229 I
e cb4.chrX               9357797 0 + 21540570 C
e caeRem4.Crem_Contig0   1214611 0 -  4500979 C

a score=81836.000000
s ce10.chrX              4253952 109 + 17718866 TTTAAATTT--CAGGGCTTTCAAGCTTGACGATGCATCGGTGAACACAATACGGGTTGGGCATACTGTATCTCCCGCCACACAGAAAACAACAAAT------------AGGACGCTGGCTTAA
s cb4.chrX               9357797 111 + 21540570 CCCAAATTTTGCAGGGCTTTCAAACTCGATGACGCTTCTGTTAACACAATACGGGTAGGGCAAACCGTGTCACCGGCAACGCAAAAAACCACAAAT------------AAGACGTTGGCATAA
i cb4.chrX              C 0 I 1925
s caeRem4.Crem_Contig0   1214611 110 -  4500979 taaagatttt-cagcgCTTTCAAATTGGATGACGCATCCGTTAACACAATACGAGTAGGACATACGGTGTCTCCGGCGAcccaaaaaacaacaaac------------aagaCATTggcttga
i caeRem4.Crem_Contig0  C 0 I 496
s caeSp111.Scaffold630  14738564 111 - 20921866 ttgaagttttccaGCGCGCTCAAGCTCGATGACGCATCGGTGAACACGATACGAGTTGGGCATACAATTTCTCCGGCGACacagaaaacaacaaat------------aaaACGTTGGcgtga
i caeSp111.Scaffold630  C 0 I 525
s caePb3.Scfld02_0       2505308 111 +  4147112 TTAAAGTTTTCCAGCGCGCTCAAACTCGATGACGCATCGGTGAATACAATCCGAGTTGGACATACTGTATCTCCAGcgacacaaaaaacaacaaat------------aaaacgCTGGCATGA
i caePb3.Scfld02_0      C 0 I 568
s caeJap4.Scaffold17084   184252 121 -   375229 -TTTTGTTTT-CAGTACATTCAAACTTGATGATGCATCAGTGAACCATGTTCGTGTCGGCCAGACGATATCCCCCGCAACACAGAAAACAACCAACCGAACTACATAAAGGAAGTTGGCTTTC
i caeJap4.Scaffold17084 I 712 C 0

a score=282.000000
s ce10.chrX              4254061 3 + 17718866 TTG
s caeJap4.Scaffold17084   184373 3 -   375229 TTG
i caeJap4.Scaffold17084 C 0 I 5680
e caePb3.Scfld02_0       2505419 568 +  4147112 I
e cb4.chrX               9357908 1925 + 21540570 I
e caeSp111.Scaffold630  14738675 525 - 20921866 I
e caeRem4.Crem_Contig0   1214721 496 -  4500979 I

a score=0.000000
s ce10.chrX              4254064 935 + 17718866  
e caePb3.Scfld02_0       2505419 568 +  4147112 I
e caeJap4.Scaffold17084   184376 5680 -   375229 I
e cb4.chrX               9357908 1925 + 21540570 I
e caeSp111.Scaffold630  14738675 525 - 20921866 I
e caeRem4.Crem_Contig0   1214721 496 -  4500979 I

a score=328.000000
s ce10.chrX              4254999 54 + 17718866 CGCTGGCCTAGAATTCTCCATTGC----CGCGTCCTCTCGACTGCACACACATTCAAA
s caePb3.Scfld02_0       2505987 49 +  4147112 CACTGGCCGAATATTCTCCGTTGTGCAGAAAGTTCTTCCACTTGCattt---------
i caePb3.Scfld02_0      I 568 C 0
e caeJap4.Scaffold17084   184376 5680 -   375229 I
e cb4.chrX               9357908 1925 + 21540570 I
e caeSp111.Scaffold630  14738675 525 - 20921866 I
e caeRem4.Crem_Contig0   1214721 496 -  4500979 I

a score=-1330.000000
s ce10.chrX              4255053 35 + 17718866 CACA----CACTCTTTGCCCGGTTTAATACAGTTTTGCA
s cb4.chrX               9359833 32 + 21540570 cACACGCTCACCCGTTCTGCAatc-------attttccg
i cb4.chrX              I 1925 I 2
s caePb3.Scfld02_0       2506036 19 +  4147112 --------tactatttctccgttt-------gct-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   184376 5680 -   375229 I
e caeSp111.Scaffold630  14738675 525 - 20921866 I
e caeRem4.Crem_Contig0   1214721 496 -  4500979 I

a score=-10841.000000
s ce10.chrX              4255088 60 + 17718866 TTTTTCTCAC---------GAATAACG--------ACGGTTTTTTTTTT-------CCATTTTTTATTGTCTGTTTTATAGAAT
s cb4.chrX               9359867 53 + 21540570 tttttcacaC--------AATTTACGA--------TTGATTTCCTGTAT-------ACATTTGG--------ATTTTATTGCAG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1215217 54 -  4500979 tttttctcac---------ctataaaa--------acagtttcccaaataataaaaacgtt------------ttttataG-GG
i caeRem4.Crem_Contig0  I 496 C 0
s caeSp111.Scaffold630  14739200 57 - 20921866 TTTTACCCACAAATGATGGATTCGCCataaattttattgtttctttctt-------tcagctat--------------------
i caeSp111.Scaffold630  I 525 C 0
s caePb3.Scfld02_0       2506055 68 +  4147112 ttcttctccc--gttttgatttttccg-----tttatgatttcctttGC-------GGATctataa--aacaattttatagcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   184376 5680 -   375229 I

a score=73700.000000
s ce10.chrX              4255148 193 + 17718866 AAAAATG---AATGCCAACGATTTGTTTGGTGGCCTTAGTGAGAGCAGTGGGAGCAGTGACGAAGACGACGAC---ACTGTGATGCCACAACCAACAGGCGCTCACAATGTGCTTGCAGATTTGGAGCTCAGGTAA-----------TCTTTGCtta--------tatta---ttaaaattatatcata-----ttattttttCAGCGATGACGATGGAGATGAGG
s cb4.chrX               9359920 199 + 21540570 AAAAATGGGAGATGCGAACGATTTGTTTGGAGGTCTCAGCGAAAGCAGTGGGAGCAGTGACGAGGAGGACGCTATCACTGATATTGTTCCTCCAAAGAAC---CAGGACGTGCTTGCTGATTTAGCTCTGAGGTAAG----------ACTTTTC----------TATCTATGCTGCAAATAATATGGAAG----TCTTTGTTTCAGTGATGAAGACGACGATCTAG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1215271 195 -  4500979 AAAAATG---AATGCGAATGATTTGTTTGGTGGTCTCAGTGACAGCAGCGGGAGCAGTGACGAGGAGGACAAT---TCTCGAATGATACCGCCAAAACAC---CAGAATGTGCTTGCCGATTTGGAGTTGAGGTGAG----------TATTTTCGtaattaaaacattta---ttcaattaattt---------catCCGTTCTAGTGATGAAGACGAGGATCTTG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  14739257 184 - 20921866 aaaaatg---aatgcgAATGATTTGTTCGGAGGACTCAGTGATAGCAGTGGAAGTAGCGACGAGGAGGACGTT---TCGTCAATGTCTCAGCCGAAACCC------GATGTAATGGCTGATTTGGAGTTGAGGTATG----------TTATTGATTGAACGCtgcaaata---aaaaaatgat-----------------ttgtaGTGATGAGGATGACGATGatg
i caeSp111.Scaffold630  C 0 I 58
s caePb3.Scfld02_0       2506123 188 +  4147112 aaaaatg---aatgcaaaCGATTTGTTCGGAGGACTCAGTGACAGCAGCGGAAGCAGCGACGAAGAGGATGCT---ATTGCAATGCCCCCTCCATCGCAT------AACGTGCTCGCTGACTTAGAATTGAGGTATT----------TTATAGCTTT----------------CAAACATGATTTAATAGCTTTTCTTCCTTATAGTGACGAGGACGACGACATTG
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084   190056 206 -   375229 aaaaatg---gaCGCAAGCGATTTGTTCGGAGGACTCAGTGAAAGCAGTGGAAGTTcggatgaagaagaagaa---attgCCATTTCACCGACAGTTGCTGCTCCAAATGTACTAGCGGATCTTGAATTGAGGTGTGGTGaactattgattttttttgtccatattttca---ttttaataTTATCAGT-----------TTTTAGCGATgatgaggaagaagaag
i caeJap4.Scaffold17084 I 5680 C 0

a score=-21603.000000
s ce10.chrX              4255341  64 + 17718866 ATTTTTCAAGAGATGGAATGCGCTCTGACG--------------AAAACCAAATTTCGC--CGGGACA------------------------GGAGTCCGTACC---------------
s cb4.chrX               9360122  46 + 21540570 attt-------gattgaaaaatcaCCATC------------------GCCAT---------CAAAAAG------------------------TGGACCGTCATC---------------
i cb4.chrX              I 3 I 20
s caeRem4.Crem_Contig0   1215469  36 -  4500979 A----------AATTGTCAATGCATCG----------------------------------CAAAACA------------------------CCAACCGAAACA---------------
i caeRem4.Crem_Contig0  I 3 I 25
s caePb3.Scfld02_0       2506314  41 +  4147112 ----------------AGACTGCTCCAGTG--------------AAAGACGA---------CAAAAAG------------------------GAAGTTGCGGCG---------------
i caePb3.Scfld02_0      I 3 I 11
s caeJap4.Scaffold17084   190262 112 -   375229 -------aacggCTGGAAGATTCACCAGAGGTCAAATCGGATGTGAAACCACTTTTCACTACGGAAAGCTACGAAGATTTCGATGAAACTTCTCAATCACAACAGTACAGTAATCTACC
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14739441  58 - 20921866 I

a score=68451.000000
s ce10.chrX              4255405 226 + 17718866 -------AACTCCGA--TCACACCGAGAGC---------------------------------------------------ACCAGTCGTCTTTTCACTTTCCGACGGAGAGGATTCTATGGATATGCCGGACATCGACCAGATGATGATGAAACGGAATGCCGCTGCT---------GCCGCGGCCGCTGCT---GCAGAAGAGCAAGCTGCTCGAGAAGCTGAAGCTGA---------TAGAGTTGCGGAGGCGAACAGA---GCT---------GCGGAAACCGCCAAGACTGCTGAGAAGCGAA-------AAGTGAGTCAT
s cb4.chrX               9360188 251 + 21540570 -------AA--CCGC--TACCAACAAGGCC---------------------------------------------------TCCAGtggttttttcactttccgaCGACGAAGACTCAATGGACATGCCGGATATTCAGCAAATGCAACGGAATGCAGCTGCAGCAGCC---------GCCGCCgctgctgccgaagctgcagaaaaagctgctgcagttgcagaagctgctgcaaaagagaaagctgcCGAGGAAGCGAGATTGGCTGAAATTAAGGCAGAACAAGAGAAAGCGGCTGAAAAACGGAGACGAGTGAGTAGT----
i cb4.chrX              I 20 I 27
s caeRem4.Crem_Contig0   1215530 225 -  4500979 -------AACTCCTC--CAGCACCAAGACC---------------------------------------------------GCCGgtcgttttttctctctcagaTGATGATAACTCTATGGATATGCCGGATATTGATCAAATGATGCAAAAAAGGAACGCTGCGGCC---------GCTGCAGCTGCAGCAGAAGCAGCAGAACGAGCTGCGAAAGCTGCTGAGGCTGC---------AAAAGCTGCCGAAGTGTTAAAA---GCT---------GCAGAAGAAAAGATTGCTgcggaaaaaagaa-------gggtAAT----
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold630  14739499 227 - 20921866 -------AAGGCCGG--CATCTTCAAGACC---------------------------------------------------TCCGGTTGTTTTTTCGCTTTCGGACGACGATGATTCGATGGACATGCCGGATATCGATCAGATGTTGCAGAAAAGACAAGCTGCAGCTGCTGCAGCGGCCGCCGCTGCTGCCGAAGCTGCTAAACAAGCAGAAGAAGCGGCAGAAGCAGC---ACGATTAGAGGCTAAAAAGGCT---------GCT---------A---------TTCTGGCTGCTGAAAAACGTA-------AAGTAAGTT--
i caeSp111.Scaffold630  I 58 I 1
s caePb3.Scfld02_0       2506366 229 +  4147112 -------GAAACCAA--CCGCGCCGAGACC---------------------------------------------------TCCAGTggttttctcactttctgatgatgatgattcgaTGGATATGCCTGACATAGATTCGATGATGCAGCGACAACGTGCTATTGCTGCT------GCCGCCGCTGCAGCC---GCTGCAGAACAAGCTGCCAAAGATGCCGAAGCTGC---AAGAGTCAAGGCTGAGCAGGCG---------GCT---------AAAGAACGTGCCGTTGCTGCTGAGAAGCGGA-------GAGTGagttct
i caePb3.Scfld02_0      I 11 I 4
s caeJap4.Scaffold17084   190374 254 -   375229 AGACGAAAAGTCCACAGACGCACCGAGACCTGTAGGttttttacttaaaatttgaactggtacttgaaaattttgactttttcaggtagttttttCGTTATCCGACGATGAAGACACTATGGATATGCCGGATATTGATCAGATGATGCAGAAGCGGAACGCTGTCGCTGTCGCTGCGGCAGccgctgctgctgctgctgctgaacAGGCGGCGGAG------CAAGCCGC---------------TAAAGAATTG---------GCT---------GAA---------------GCAGAGGAACGTC------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-1673.000000
s ce10.chrX              4255631 14 + 17718866 ---TTCTTGTTTCCCGA
s caeRem4.Crem_Contig0   1215755  9 -  4500979 ---TAATTGTTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14739727 11 - 20921866 ---TCTTTATCT---GA
i caeSp111.Scaffold630  I 1 I 2
s caePb3.Scfld02_0       2506599 14 +  4147112 ---tttttatttttcaa
i caePb3.Scfld02_0      I 4 I 144
s caeJap4.Scaffold17084   190628 17 -   375229 TTCGGGTTGGTGCTCAA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9360439 27 + 21540570 I

a score=-2869.000000
s ce10.chrX              4255645 16 + 17718866 CGATGTATAATTATAA-----
s caeRem4.Crem_Contig0   1215764 13 -  4500979 ---TATCTACTTATTC-----
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold630  14739740 10 - 20921866 ------TCACTCATAA-----
i caeSp111.Scaffold630  I 2 I 6
s caeJap4.Scaffold17084   190645 11 -   375229 ----------TGATGAAGTTG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2506613 144 +  4147112 I
e cb4.chrX               9360439 27 + 21540570 I

a score=3177.000000
s ce10.chrX              4255661 55 + 17718866 ----------TATAATTGTAGATTGATAAAA----------TTTCAAAAA-GCGAGCCACCAAGAAAGCAGCCACG
s cb4.chrX               9360466 55 + 21540570 ----------tttgattccAGTTGGAATACA----------TTGTCAAGG-TGGAGTTACCAATGAAACAACCAAG
i cb4.chrX              I 27 I 374
s caeRem4.Crem_Contig0   1215789 55 -  4500979 ----------AACAATTACAGATTGAAGCCA-----------TGTCGAGACCAGAGCCATCACGCAAACAACAACG
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold630  14739756 55 - 20921866 ----------ATGATTTCCAGATGGACGAAC----------TTACCAAAA-TGGGACCACCGGccaaaaaatcaca
i caeSp111.Scaffold630  I 6 C 0
s caeJap4.Scaffold17084   190656 71 -   375229 CATAAATCTTAATTATTTCAgcttgaagaagaagaacgtGCGTACCAAGA-----ACCAGTACGAAAGCAACCAAA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2506613 144 +  4147112 I

a score=1490.000000
s ce10.chrX              4255716 9 + 17718866 TCATGATGA
s cb4.chrX               9360895 9 + 21540570 TCTTGTGGA
i cb4.chrX              I 374 C 0
s caeRem4.Crem_Contig0   1215844 9 -  4500979 GCTAGACGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14739811 9 - 20921866 ttttgaCAA
i caeSp111.Scaffold630  C 0 C 0
s caeJap4.Scaffold17084   190727 9 -   375229 ACTCGAAGA
i caeJap4.Scaffold17084 C 0 I 121
e caePb3.Scfld02_0       2506613 144 +  4147112 I

a score=-15286.000000
s ce10.chrX              4255725  87 + 17718866 TAACT---------CTGAAGCTGGGCCCAGC-------GGGCAGATTTCGGTACGTAAAATCTGTGATACTTAACTAA----------------------TTCAAAAAGAAATGGACTGAATATA
s cb4.chrX               9360904 100 + 21540570 CAAAA---------CCGGAGC---GCTCAGCCGTTTGATAGCGGGTTG-----GGCAAAATCAATGATAT-TAACTCGATTAGCGACCCTCCTGAATGTATTCACAACCAA-------gaaaata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1215853  78 -  4500979 TCAAC---------CGGGA------CCCAGTCATGTAAGTTTTGTTTAC----TACAAAATTAGGAAATC-Taactagttt-------------------ttca-aaataa-------taatacC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14739820  46 - 20921866 CGCATTATCAAGCGCTGGT------CCCAGCCACG---GAGtgagttc------------------------------ttt-------------------ttca---------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2506613 144 +  4147112 I
e caeJap4.Scaffold17084   190736 121 -   375229 I

a score=-10207.000000
s ce10.chrX              4255812 40 + 17718866 ----TTGGTTACCCAATATTAATCGCCGATGAAACACTTTTCAA-
s cb4.chrX               9361004 41 + 21540570 tcaacaacatgCACAATCGCCTTCCTCAATAAAA---CGTTCAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1215931 38 -  4500979 TTCACTgcaattttgaatgttttc----aaaaaa---cttttgag
i caeRem4.Crem_Contig0  C 0 I 243
s caeSp111.Scaffold630  14739866 31 - 20921866 tttgttacctatcaaaacaaattg-------------tttttga-
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2506757 24 +  4147112 -TTG------Gtccgattcaattt-------------tttttca-
i caePb3.Scfld02_0      I 144 C 0
e caeJap4.Scaffold17084   190736 121 -   375229 I

a score=-2341.000000
s ce10.chrX              4255852 9 + 17718866 TTACAGGGA--
s cb4.chrX               9361045 8 + 21540570 TTTCAGAG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14739897 3 - 20921866 --tca------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2506781 9 +  4147112 --acactgGGG
i caePb3.Scfld02_0      C 0 I 150
e caeJap4.Scaffold17084   190736 121 -   375229 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=-164.000000
s ce10.chrX              4255861  4 + 17718866 ----------GACG
s cb4.chrX               9361053 14 + 21540570 CCGCATCCGTGATG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14739900  3 - 20921866 -----------atg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2506940  4 +  4147112 ----------GATG
i caePb3.Scfld02_0      I 150 C 0
e caeJap4.Scaffold17084   190736 121 -   375229 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=5888.000000
s ce10.chrX              4255865 115 + 17718866 ACGACCTTCTGGACACAAACATTTCGCTGGAAAGCTTCGACTTGAGCAAAGTAAACGATGCAAGGTACCAAGCATTGATTCAACAACATCAGCCGGAAGAAGAAGCGTAAGATTT
s cb4.chrX               9361067 100 + 21540570 ACAGCCTTT---------------CGCTGGAAGGTTTCGAGTTCAGCAAAGCCAACGAAGCAAAATTCCAAGCTCTGATCCAACGCCATCAAACGGAAGCCGACGGGTAAAACTT
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold630  14739903  90 - 20921866 acatttttccaaattcaaaatattagCCAAAGAgattcttttcctttcaa---aataCTTAAAAATATCA-----TTCTCAAATAACATGAA-----------------AAACTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2506944 105 +  4147112 ACAGCCTTTGCGACACTAGTTACACGTTGGAAGGTATCGACGCCGCTCAAGTCAACGAGTCCAAGTTCCAGGCACTCATCCAAAAGCATAAACCGGAAG----------AAACTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   190857  73 -   375229 ACAGCCTTc---acgataatctttcactaGAAAGTTTCGACATGGGCAAACTGAACGAAGCGAAATTGCAAGCTCT---------------------------------------
i caeJap4.Scaffold17084 I 121 C 0
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=-1728.000000
s ce10.chrX              4255980 24 + 17718866 TATAGAAGAAGTATCGATGCGTTT
s caeSp111.Scaffold630  14739993 19 - 20921866 CATAAA-----TGacattatattt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2507049 24 +  4147112 GGTAGGGTTGCTAAAGATGGGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   190930 10 -   375229 TTTAGA--------------ACTT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9361167  8 + 21540570 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=-4888.000000
s ce10.chrX              4256004 70 + 17718866 ATATAAGAAcaaaaagcacccaaacggacaaatttcgtatggagac---ttctcaa--aaacttcctcaaatttt
s caeSp111.Scaffold630  14740012 71 - 20921866 ttattg----aatatatctctACATTGAATCACTTCAAATTGCGACGATTGAtcaattaaattttattaaatttc
i caeSp111.Scaffold630  C 0 I 51
s caeJap4.Scaffold17084   190940 19 -   375229 ---------CAAAAGGTCGCCA----------------ATGAAG-------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2507073  0 +  4147112 C
e cb4.chrX               9361167  8 + 21540570 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=-1482.000000
s ce10.chrX              4256074 66 + 17718866 tttgaccgttcacaatcttgagaaaacactaattttagccaacatttccaattttgcaacgtttgc
s caeJap4.Scaffold17084   190959 11 -   375229 -------------------GAGAAAGCAGC------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2507073  0 +  4147112 C
e cb4.chrX               9361167  8 + 21540570 I
e caeSp111.Scaffold630  14740083 51 - 20921866 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=-4375.000000
s ce10.chrX              4256140 66 + 17718866 gtgtcgcaGCAGTATATAAATATAAATGAGTAGAATCCAGAATTAATATAACTCCTTTAA-----CACGCT
s caeSp111.Scaffold630  14740134 61 - 20921866 GTGTCG-------ATTTGAATA-AAGTGAATGAAG--CAAAATTCCAAGCgcttattcaaaaacacaaaCC
i caeSp111.Scaffold630  I 51 I 17
s caeJap4.Scaffold17084   190970 21 -   375229 ---TCGGGGTAAGCTATTCATA-AA----------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2507073  0 +  4147112 C
e cb4.chrX               9361167  8 + 21540570 I
e caeRem4.Crem_Contig0   1215969 243 -  4500979 I

a score=171.000000
s ce10.chrX              4256206 11 + 17718866 GGCACATTCGA
s caeRem4.Crem_Contig0   1216212 11 -  4500979 GACGTACTCCA
i caeRem4.Crem_Contig0  I 243 C 0
s caeSp111.Scaffold630  14740212 11 - 20921866 AAAACAAGTCa
i caeSp111.Scaffold630  I 17 C 0
s caeJap4.Scaffold17084   190991  9 -   375229 --CAAATTTGA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2507073  0 +  4147112 C
e cb4.chrX               9361167  8 + 21540570 I

a score=1754.000000
s ce10.chrX              4256217 3 + 17718866 TTA
s caeRem4.Crem_Contig0   1216223 3 -  4500979 TCG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold630  14740223 3 - 20921866 tta
i caeSp111.Scaffold630  C 0 I 1
s caePb3.Scfld02_0       2507073 3 +  4147112 TTA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084   191000 3 -   375229 TTA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9361167 8 + 21540570 I

a score=-7509.000000
s ce10.chrX              4256220 55 + 17718866 TCTAAT-----TTATTCATTTTTCAGGCCTGGCCCCTCA---CGTCCAGCACCAGCTCGTCCA
s cb4.chrX               9361175 46 + 21540570 AACcataaaaattaata--ttttcag---cgGTCCACCA--CCACCCCGT----------CCA
i cb4.chrX              I 8 I 28
s caeRem4.Crem_Contig0   1216229 56 -  4500979 AATcgt-----ctttca--ttttcagacctgGCCCATCAAGTCGCCCCGCGCCTTCAGCACCA
i caeRem4.Crem_Contig0  I 3 I 9
s caeSp111.Scaffold630  14740227 47 - 20921866 ttcact-----ttttaa--tcattcatttcagtcCCTCAAATCGTCCTACA---------CAA
i caeSp111.Scaffold630  I 1 I 9
s caePb3.Scfld02_0       2507077 56 +  4147112 ATGAGT-----TCACGC--TTTTCAGTCCGGGTCCTTCTTCTCGTCCTCCAACAACTACTCCA
i caePb3.Scfld02_0      I 1 I 9
s caeJap4.Scaffold17084   191003 55 -   375229 ------TGATAGTTTTC--ATTTAAGACCTGCTCCATCATCGCTTCCAGCACCAACACCGGCG
i caeJap4.Scaffold17084 C 0 C 0

a score=333.000000
s ce10.chrX              4256275 19 + 17718866 GCGCGGA------AACTTGACGATG
s caeRem4.Crem_Contig0   1216294 13 -  4500979 GCTAGCC------GTgcgg------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  14740283 19 - 20921866 ACTCGCC------GTCTtgacgatg
i caeSp111.Scaffold630  I 9 C 0
s caePb3.Scfld02_0       2507142 19 +  4147112 GCGCGCC------GTCTTGACGATG
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084   191058 25 -   375229 GCTCGACAGAAAAAGTTGGATGAAG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9361221 28 + 21540570 I

a score=76164.000000
s ce10.chrX              4256294  99 + 17718866 AAGAAGAAAATGAGCTTTCGCGATTGAAGACACAAGTTTTGCTTTCCAACTTTTCACAAGAGCAACTGGAAAGATATGAGTCATACAGACGGTAAT------ATT
s cb4.chrX               9361249 105 + 21540570 AAGACGAAAATGAGATTGCACGTTTGAAGTCACAAATTCTTCTGTCCAACTTCTCACAAGAGCAACTGGAGCGCTATGAATCATATAGAAGGTAATCTCAAAGTT
i cb4.chrX              I 28 I 33
s caeRem4.Crem_Contig0   1216307  94 -  4500979 aagaagaaaacgagatttCTCGTTTGAAGACTCAACTACTTCTTTCCAACTTCTCACAAGAGCAGCTTGAACGATATGAGTCATATAGAAG-----------GTT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold630  14740302  99 - 20921866 aagaagaaaatgagttgtCTCGGATGAAGACTCAACTTCTTCTGTCTAACTTCTCTCAAGAGCAACTCGAACGTTATGAGTCATATAGAAGGTATC------GAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2507161  99 +  4147112 AGGAGGATAACGAGGTCTCTCGTATGAAGACTCAATTGCTCCTATCAAACTTCTCTCAAGAGCAATTAGAGCGCTATGAGTCTTACAGAAGGTAGC------ATT
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17084   191083  99 -   375229 AGGAGGAAAATGAGATTTATCGACTTAAAACTCAAGTTTTGCTGTCAAACTTCTCACAAGATCAGCTTGACCGTTATGAATCGTATCGAAGGTGAT------TTT
i caeJap4.Scaffold17084 C 0 C 0

a score=-9653.000000
s ce10.chrX              4256393 37 + 17718866 GGTAATAAAACACAAA--AAAAT----------------------------------AATAAATGATGAACTT-
s cb4.chrX               9361387 71 + 21540570 ACTAATTGAGCCTGAT--GTTGCATAAGTATCTCTGGAAAGTAGAAAAGGAATTCTGAGTTTAGTataaattt-
i cb4.chrX              I 33 I 74
s caeRem4.Crem_Contig0   1216408 28 -  4500979 ACTAATCGAGTCAAAG--ATTGc-------------------------------------------taaattt-
i caeRem4.Crem_Contig0  I 7 I 5
s caeSp111.Scaffold630  14740401 35 - 20921866 TCAAATGGGGTTACATCAGTTGt--------------------------------------aattatatattt-
i caeSp111.Scaffold630  C 0 I 1
s caeJap4.Scaffold17084   191182 34 -   375229 --CAACCCAGGATAAT--TATAT------------------------------------TTCACTTTAAATTCT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2507260 32 +  4147112 I

a score=191014.000000
s ce10.chrX              4256430 255 + 17718866 CAGCTCTTCATTCCAAAAGTCGACTATTCGCCGTTTGATCAGTCAGTACACTGGAGGAGTGAACGTTGGACAGAGTGTGGTCATCGCTATCGCAGGATTGGCTAAG-----------------------------------------------GTGTTCGTCGGTGAAGTTGTCGAAGAAGCATTGGATATTCGTGACATAAATGAGGAAGAAGCTAGCAATCCACTACAGCCGCATCATATTCGTCAAGCGTTCCTCCGGCTCGGAGAGCAAGGAAAGCTATTCCCACCAATTGGTCCGAA
s cb4.chrX               9361532 255 + 21540570 CAGATCTTCTTTCCAAAAGTCCACCATTCGTCGTCTGATTAATCAATTCACCGGTGGAGCCAACGTCAACCAGAGTGTCGTCATCGCCATCGCCGGATTGGCTAAA-----------------------------------------------GTTTTCGTTGGAGAAGTTGTCGAGGAAGCACTGGACATTCGTGATTTGGATGAGGAGGCTGCCAGGAATCCACTTCAACCAGAACATGTTCGTCAGGCTTTCCTCAAACTCGGTGAGCAAGGGAAGCTCTATCCACCAATTGGCCCAAG
i cb4.chrX              I 74 I 82
s caeRem4.Crem_Contig0   1216441 255 -  4500979 cagatctTCCTTCCAAAAGTCCACGATTCGTCGCTTGATCACTCAGTTCACTGGTGGTGCTAATATTGGTCAAAGTGTTGTCATTGCAATTGCTGGATTGGCAAAG-----------------------------------------------GTCTTTGTGGGAGAAGTTGTCGAAGAGGCTCTCGACATTAGAGATCTCAATGAGGAGGAAGCGAAGAAACCTCTGCTGCCACATCATGTTCGACAAGCTTTCCTTCGCCTTGGAGAACAAGGAAAACTCTATCCACCTCTTGGACCAAA
i caeRem4.Crem_Contig0  I 5 I 15
s caeSp111.Scaffold630  14740437 255 - 20921866 cagatcttctTTCCAAAAGTCCACCATCCGCCGTTTGATCAGTCAATATACTGGAGGCGCGAATGTTGGACAAAACGTAGTCATTGCGATTGCCGGACTCGCAAAA-----------------------------------------------GTCTTTGTTGGAGAAGTGGTTGAGGAAGCACTGGACATCCGCGATCTGAACGAAGAAGAGGCGAAAAATCCTCTGCAGCCACAACACGTTCGCCAGGCTTTCCTTCGTCTCGGAGAACAAGGAAAGCTCTATCCACCAATTGGTCCAAG
i caeSp111.Scaffold630  I 1 I 5
s caePb3.Scfld02_0       2507292 255 +  4147112 CAGATcatctttccaaaaatcaacaattcgCCGTCTCATTGCCCAATACACAAATGGCGCGAACGTGAACCAGAGTGTAGTGATTGCTATTGCTGGATTAGCCAAA-----------------------------------------------GTTTTTGTTGGAGAAGTTGTTGAAGAGGCTCTCGACATCCGTGACCTCAACGAGGAAGAAGCAAAGGCTCCTCTCCAGCCGCAACACGTTCGTCAGGCATTCCTTCGTCTTGGTGAACAGGGAAAACTTTACCCGCCGATTGGACCAAG
i caePb3.Scfld02_0      I 32 I 5
s caeJap4.Scaffold17084   191216 302 -   375229 CAGATCTTCGTTCCAAAAATCCGCAATCAGAAAGCTTATCGGTCAGTACACTGGCGGTCTCAACGTCGGACAAAACGTGGTTATTGCAATTGCTGGTTTGGCCAAAGTGCGTACAGTAGTCGTCAATAAATaagtatctgaaaaaaattgcaggttTTCTGCGGTGAAGTCGTTGAAGAAGCGTTGGATATCAGAGATCTAAACTCTGACGAAACCACCCGCCCATTAAAGCCACATCACATTCGTCAGGCGTACAAACGTCTTGGAGAGCAGGGAAAACTTTATCCGCCAATCGGACCAAG
i caeJap4.Scaffold17084 C 0 C 0

a score=-3032.000000
s ce10.chrX              4256685 20 + 17718866 ACAATCCCATCTTGA---------------GTGAA
s caeRem4.Crem_Contig0   1216711 32 -  4500979 GTGAGCTCGTATAAA---CTAAATTCTATAACAGA
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold630  14740697 35 - 20921866 ATCATCTCAATTGAAGACACGTCCTCCGGTATAAA
i caeSp111.Scaffold630  I 5 C 0
s caePb3.Scfld02_0       2507552 32 +  4147112 ACAGTCTCTCCTAAA---CCTTGTTCCAAGTTATA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084   191518 20 -   375229 ACGCACTCATCTTGA---------------ATGAA
i caeJap4.Scaffold17084 C 0 T 8969
e cb4.chrX               9361787 82 + 21540570 I

a score=-2716.000000
s ce10.chrX              4256705 31 + 17718866 TAATTATTTTTCTT-TGGTTTTCCG----------TTTCATT
s caeRem4.Crem_Contig0   1216743 38 -  4500979 TAAA----ATGTATTTGACTTCTCTTCCTGATATATTTCATT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold630  14740732 39 - 20921866 TGAACATAATTCAA-TGGTTCATAG--CTAAGAtgtattatt
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2507584 34 +  4147112 TTAATGTTACGCACTTGGTTTATAT--------TGTATGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e cb4.chrX               9361787 82 + 21540570 I

a score=-17121.000000
s ce10.chrX              4256736 36 + 17718866 TTT------------ATTGCTTTGTTTTACA-----------------------------TATAATCAGATTCTAAT---------------------------
s cb4.chrX               9361869 58 + 21540570 ----------------TTTATTGATTCC-TG-----------------------------TGACATAGTATTTTCTTTGGGAACGGTCTGtcagattttttaat
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   1216782 44 -  4500979 ----------------GTAATTTGCTGC-TG-----------------------------TCGTATA--AATTTAATTG----------ATCAAA--CTTTAAT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold630  14740771 35 - 20921866 ttc------------atttctttgtttc-ta-----------------------------tAAAGTTTTATTCTGAT---------------------------
i caeSp111.Scaffold630  C 0 I 141
s caePb3.Scfld02_0       2507618 76 +  4147112 TTCCTCATCTTGTGTATGTTTCCGTTTT-GAGCCATTATTTGATATCCCCAGAGTGAGAGTAGATTTGCATTCTCGT---------------------------
i caePb3.Scfld02_0      C 0 I 23
e caeJap4.Scaffold17084   191538 8969 -   375229 T

a score=-12055.000000
s ce10.chrX              4256772 62 + 17718866 -------------------GAAAAAAAGTAATCACT------GACTGCCT-----ATGTGGAAACA--------GAAAACTTTAAGTTACA---TTTTGACCG-------
s cb4.chrX               9361927 85 + 21540570 -------------------gaacCCATTTGAATACT------GTTTTTCTTGGATTTGTTGAATCTGCTCGGTCAGAACAtcagaatcaaaaagtttcagctGTTGACCT
i cb4.chrX              C 0 I 82
s caeRem4.Crem_Contig0   1216826 50 -  4500979 ---------------------ACACATTCA---GCT------GTTCACCT---ACGTGTCAAAACT--------------------TAACAAATTTACATCCG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2507717 85 +  4147112 GTATAAGATAAGTAATTTATAACATATGTGAATGTTTGTAAGTTTTATATTGCCCCCATATAAATT------------------AATCAATGGTTTTTAATGA-------
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14740806 141 - 20921866 I

a score=-4027.000000
s ce10.chrX              4256834  55 + 17718866 -------------------------------------------------------------------GAAATTTGTTTCTCTGACATTTCAAAAAATGTCACGTGCACAAATATCAACATAG---
s caeRem4.Crem_Contig0   1216876  41 -  4500979 ------------------------------------------------------------------GGAAGT------------CAGCTTAAAA----TCACGTGCGGTA--TTAACTCTACGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2507802 109 +  4147112 TAAATGATTATGTTTCCGATTATTTTCAGCTGTTGTTCCCCGTGATATTTGAAAGAATTACAACCGGGAAGT------------CAACTTAAAA----TCACGTGcggtaatctttttttccgag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e cb4.chrX               9362012  82 + 21540570 I
e caeSp111.Scaffold630  14740806 141 - 20921866 I

a score=-2459.000000
s ce10.chrX              4256889 38 + 17718866 ----AACTAACTAGAAAT-ATATCTAACCAACT----------TATTTTTTCT
s cb4.chrX               9362094 41 + 21540570 AACTAATC--AAAGAAGT-GTTTATAACAT--T------AAGAAATTTTTAC-
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   1216917 41 -  4500979 ----Tgtcgaaaagaaac-aaatctAATATTCT------GAGACATTTCGAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2507911 47 +  4147112 ----tgccaaaaagaaacaaaatttaatAAACTTACAGGAAGACATTTAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14740806 141 - 20921866 I

a score=161830.000000
s ce10.chrX              4256927 454 + 17718866 GAAAGCAGTGATCAACAATTTGCCGTTACA-----TAATTGTAGATGTCGGCG--CAGTTTAGTTTGAC---ACGGACACTCGCCAACTCTC--AATGTGCTCTGA---CCAGTCTGACTCGCGATGCCTTTGGAGCAAACGTTGCTTTTCATATTAGGCCTGATTTCAGCTCTTTTATATTCAATGATTGTGAGAACACTTAGAAAACATAGAAAAACATCTCTTCTCGGAGGAACTTTCTTCAAGCTTGTTGAGCTGCAGGTA------TAATAACTTTCTCCT-----AGAAATCTTTTTTATTAAATAC-TCTTTACAGTTTTACGCTGAATTAGTTTTCTTTATCGAATTTTCGATCACAATGCGGTTCCGAAAGTATACAGATTTTTACATGCTGTTTGAGCCAGATACAGTATTTATTGGTATTATTCCGCGAATTATTTCTGGCATACATTACTACATTAAGGTATATTTTTT
s cb4.chrX               9362135 465 + 21540570 -GAAGCAAAGATTAACATTTTCCCCGAGCCAGTCATAATTGTATGTGTCGGAA--AAGTTTAGAGTGGCTGAAAAAGCAATCACCACTTTTTCGAATGTGCATAACTCTTCACTTTGCTCCAAGATGCCGTTTGAGCAGTCGCTTCTCTTCTTGTTCGGATTGATGtcgatttttctttatttacTGATAGTCAGGACATTGAAAAAGCATCGGAAAACACCTCTACTGGGTGGGACCTTTTTCAAGTTGGTGGTTCTCCAGGTGAGCG------AGATGAATCAGCAGAAACACAT------Tgtacattga-aaatttcagttttatgCCGAAACGTTcttttttctggagttttcttTGACAATGAGGTTTCGAAAGTACACTGacttttatttgttgtttgAACCGGGAACTGAGTTCACTGGTATTGTCCCACGTGTCATTTCGGGAGTTCATTATTATGTGAAGGTAATTGCACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1216958 444 -  4500979 -GAAGCAAAGATTAGAATTT-------GGCAGT--TAATTGTACATATCGAAA--------AGAGTGTTTGAAAACACAATCACCACTTTTT-GAATGCGCATTGC---TCATTTTGTTCTGAGATGCCGTTTGAGCAGACACTCCTTTTTCTGTTAGgacttttttcaatacttttgtATACATTGATAGTTCgaacactgaaaaaacatCGGAAAACACCTCTACTGGGTGGTACATTCTTTAAATTAGTTGTTCTACAAGTAAGTgc-ttttaaaagaatttt-----agatat------tatcca--aa-tattttcagttctatGCTGAAGCATTCttctttctcgaattttcattaACAATGCGATTCCGGAAGTATACCGACTTCTATACATTCTTCGAATCTGGTACTCAATTCACTGGTATTGTACCACGGATAATCTCAGGAGTTCACTACTATATCAAggtcagtttttt
i caeRem4.Crem_Contig0  C 0 I 80
s caeSp111.Scaffold630  14740947 444 - 20921866 GGAAACATAGATCAGATATTTGCCGAGGCC-----TAATTGTATGTGTCGAGA--------ATGTTGGCTGAAAACACAATCACCCGTTTCT-GAATGTGAAGTGC---TCAGTTTGATTCAAGATGCCGTTTGAGCAGacgcttctttttctttttggactAACATCAATTCTTTTGTATTGTCTTATTGTGAGAACACTTAGAAAACACAGGAAAACTCCATTGTTGGGTGGAACCTTCTTCCGGCTCGTTGTTTTACAGGTAAACTATTCTTATTTGAATTCC-----TCAAAT---------TAAAATC-AACCTTCAGTTTTACGCTGaaaccttcttcttcattgaaTTTTCGCTAACAATGCGATTCCGCAAATACACTGATTTTTATACGCTCTTCACACCAGGAACTCAGATTACAGGATTCGTACCGCGAGTCATCTCTGGTGTTCATTATTATACCAAagtaaat-----
i caeSp111.Scaffold630  I 141 C 0
s caePb3.Scfld02_0       2507958 453 +  4147112 GAAAGCATAGATCAGATATTTTCCGTGGGC-----TAATTGTACATGTCGGAATAAAGTTTAGAGTGGTTGAAAACACAATCACCACTTTTT-GAATGCGCTGTGC---TCAGTCTGATCTGAGATGCCGTTTGAGCAGacgcttctttttcttatggGATTAATTTCCATTCTTCTGTACAGTCTAATTGTAAGAACTTTGAAGAAACATAGGAAAACTCCGTTGTTGGGAGGCACGTTTTTCAAGTTGGTTGTGTTGCAGGTAA-----TTGTATTCTGTTTTT-----CCGAAT------GACTAATTTCTCATCTTCAGTTCTATGCAGAAACATTCTTCTTTATCGAATTTTCTCTGACAATGAGATTCAGAAAATACACTGATTTTTATACGTTTTTCGAGCCAGGTACTCAGTTTACAGGTTTTGTACCTCGAGTTATTTCGGGTGTTCATTATTATATAAAGGTAGGTCC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T

a score=-2570.000000
s ce10.chrX              4257381 10 + 17718866 --AGTGATCTGG
s cb4.chrX               9362600 10 + 21540570 AGAACTATGG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14741391  6 - 20921866 ------attttt
i caeSp111.Scaffold630  C 0 I 3
s caePb3.Scfld02_0       2508411 10 +  4147112 --AATGATATCA
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeRem4.Crem_Contig0   1217402 80 -  4500979 I

a score=-1857.000000
s ce10.chrX              4257391 28 + 17718866 AAAACGTTTTCAAAAATTAAATAAATCC
s cb4.chrX               9362610 21 + 21540570 -CTGTTATTTTGGTACGAGAAA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14741400 24 - 20921866 ----tggttTCAATGATAAAATCGAACG
i caeSp111.Scaffold630  I 3 C 0
e caePb3.Scfld02_0       2508421 18 +  4147112 I
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeRem4.Crem_Contig0   1217402 80 -  4500979 I

a score=555.000000
s ce10.chrX              4257419 30 + 17718866 GCCGAGTTTCATAATCAGACCTTGAGAAGT
s cb4.chrX               9362631 18 + 21540570 ------------AATCAGAGCATCGGAAGT
i cb4.chrX              C 0 I 82
e caePb3.Scfld02_0       2508421 18 +  4147112 I
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14741424  0 - 20921866 C
e caeRem4.Crem_Contig0   1217402 80 -  4500979 I

a score=0.000000
s ce10.chrX              4257449 79 + 17718866 CGTTAAAAGTCGTTAAAACATAGTTCAAAAAAAGAGTAAACTATGAATAATGCGGTAATTGAGCTTACTAGTTCTCCAC
e caePb3.Scfld02_0       2508421 18 +  4147112 I
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e cb4.chrX               9362649 82 + 21540570 I
e caeSp111.Scaffold630  14741424  0 - 20921866 C
e caeRem4.Crem_Contig0   1217402 80 -  4500979 I

a score=-3042.000000
s ce10.chrX              4257528 314 + 17718866 GTTTTTGTACGTAGAGACTCCGGCTTTTT------------TGAGAAAATGTATGTTAAAGCTCATAAGTACCAAAATTCGTCATGCTTTGTGCACCTGAAAGTCAACAAACT---------------------------------------ATTATACAAACACCA-ACACAACCCGTAGAATTA-ACGATTAAAATG----TGCAAAATGaattataaatttattaaaaattatCTTTCAGCTATCTAGTATAGGCTAGTAAAAGTGGAGGTTATAGCTAAATTTTAACTTTTTCTGTTCAATTTTTTGAATTTCG-GAGTTATGTAAAAAGCAACTAACGTAGCTACTTTGCTAATAAAAGTAATCAAC
s cb4.chrX               9362731 321 + 21540570 GTTTTTGT---CaattattctgaatattttctcCAAATTAGTCGGAAAATATACAT----GTTTGCAAGTAGGAAAACTGACCG------ATGCGCATGATAATCGAGAAGATGATCCtggaaaatactttttttaggttacagtagttgtcgttgtggaacCTTTACACACGGCCCATTTTCTTACACAGCTCCAATGTTTTTTCCGAAccagagaaaaat---ttgaacattatCATTCTG---------ATTCGCTTGT--------------------ATCTTCAAATTATT------AATGATTGAAAATTcgccaaaaatattgaaaataatttgaattgCACTTCCGTTCCTTTTATTTGTCCCT
i cb4.chrX              I 82 C 0
e caePb3.Scfld02_0       2508421  18 +  4147112 I
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14741424   0 - 20921866 C
e caeRem4.Crem_Contig0   1217402  80 -  4500979 I

a score=-1153.000000
s ce10.chrX              4257842 9 + 17718866 AAATGCACA--
s cb4.chrX               9363052 9 + 21540570 --AAATTTCGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2508439 9 +  4147112 AAACACGTC--
i caePb3.Scfld02_0      I 18 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14741424 0 - 20921866 C
e caeRem4.Crem_Contig0   1217402 80 -  4500979 I

a score=-1067.000000
s ce10.chrX              4257851 3 + 17718866 TTT-
s cb4.chrX               9363061 3 + 21540570 -ATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1217482 3 -  4500979 -TTA
i caeRem4.Crem_Contig0  I 80 C 0
s caePb3.Scfld02_0       2508448 3 +  4147112 -TTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeSp111.Scaffold630  14741424 0 - 20921866 C

a score=40310.000000
s ce10.chrX              4257854 94 + 17718866 TCCAGCTTGTTGTCTACATAGGTTATTTGTTTTTTGCTGTTAATCGACTTTTCACCGCTTTGATGGTGTCTTCATACGACAAGGATAACATTTC
s cb4.chrX               9363064 94 + 21540570 CTCAGGTTGTCGTCTACATTGGCTACACAGTGTTTGCTATAAATCGGTTGCTCAGTGCTCTTACGGTATCCTCCTACAACTCGCAGAACATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1217485 94 -  4500979 TTAAGATTGTCGTTTACATTGGGTACATTGTCTTCGCGGTAAACAGGTTGCTGAGTGCTCTAACAGTGTCTACGTACAATAAAGAGAACATTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14741424 94 - 20921866 TTTAGGTTGTTGTTTATTTCGGGTACATTGTATTTGCTATCAATCGGCTGTTAAGTGCTCTCAATGTATCCTCCTATAATAAGGATAACAAATC
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0       2508451 94 +  4147112 TTCAGGTAGTTGTATATATTGGATATATTGTTTTTGCAATCAACCGACTTTTGAGTGCAGTGACAGTATCTTCATACAACAAAGAAAACGTTTC
i caePb3.Scfld02_0      C 0 I 356
e caeJap4.Scaffold17084   191538 8969 -   375229 T

a score=1590.000000
s ce10.chrX              4257948 8 + 17718866 GGTTTGTT-
s cb4.chrX               9363158 8 + 21540570 GGTTTGTT-
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig0   1217579 8 -  4500979 GGTTCGTT-
i caeRem4.Crem_Contig0  C 0 I 185
s caeSp111.Scaffold630  14741525 8 - 20921866 -Attcgttt
i caeSp111.Scaffold630  I 7 C 0
s caePb3.Scfld02_0       2508901 8 +  4147112 -gctttttt
i caePb3.Scfld02_0      I 356 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T

a score=-2043.000000
s ce10.chrX              4257956  9 + 17718866 GAAATTCCA------------------------------------
s cb4.chrX               9363230 45 + 21540570 GAAATTGTGAGGTTTGAAAGTGATTTCTGGTttgaaattgagcaa
i cb4.chrX              I 64 C 0
s caeSp111.Scaffold630  14741533  9 - 20921866 gaaatttta------------------------------------
i caeSp111.Scaffold630  C 0 I 165
s caePb3.Scfld02_0       2508909  9 +  4147112 gaaataaca------------------------------------
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeRem4.Crem_Contig0   1217587 185 -  4500979 I

a score=-1851.000000
s ce10.chrX              4257965 16 + 17718866 -----AAATTTTCAATATTTA---------------
s cb4.chrX               9363275 36 + 21540570 aaattgaactttaaCGAATGACAAATTCggttttta
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold630  14741707 13 - 20921866 -----aaatgttgaaaac------------------
i caeSp111.Scaffold630  I 165 C 0
s caePb3.Scfld02_0       2508929 16 +  4147112 -----aaatatcaaaaattga---------------
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T
e caeRem4.Crem_Contig0   1217587 185 -  4500979 I

a score=9166.000000
s ce10.chrX              4257981 46 + 17718866 TTATGTCTTTCAGGTATGGGGTACAAAAACATTGCAGCGGATAGCC
s cb4.chrX               9363325 46 + 21540570 agattttttaaaggtttggGGACCTTCAACTATAAGATGGATCACA
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1217772 46 -  4500979 CCATATAATACAGGTTTGGGGACCAACAACAATAATGTGGATATCT
i caeRem4.Crem_Contig0  I 185 C 0
s caeSp111.Scaffold630  14741720 35 - 20921866 -----------aGGTGTGGGGACCGTCAACAATCCGATGGATTATT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2508945 41 +  4147112 -----atttcgaggTTTGGGCGCCGGCAACAATCAAGTATATAACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   191538 8969 -   375229 T

a score=51242.000000
s ce10.chrX              4258027 158 + 17718866 ATTGTTCAGTGGTCTATTCCAATTCTTGGACTTCTGCCAACACATGCGTGGCCCAATTTTGACTTTTACCTTCTCATTACTCCAACTGCAATGCGGCTGAATAACGATGCAGTTTCAACAGCGGTATTCAAA------AAAAAATATTAGTTGAAAATTATTGT
s cb4.chrX               9363371 161 + 21540570 ATCACTCAATGGTCCGTTCCCATACTGGCGGTCTTGCCTACTCATGCATGGCcagattttcaattctttcttCAAATCACTGCAACAGCTATGCGTCTAAATAATGACGCATTTTCTACAGCGGTACGA-TACtagtttcccaat--tttccataAAATGCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1217818 160 -  4500979 ATAACACAATGGTTCGTTCCCATCTTAGCCATACTACCAACACATGCGTGGCCTGAATTTGACTTTTATCTCGTTATCACTTCTACAGCGATGAGGTTGACCAATGATGGTGTTTCTACAGCAGTAAGAGCAATTGTTTACTAA----AACCGTAGTATTCAgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14741755 160 - 20921866 ATAACACAATGGACTCTTCCACTCCTTGCAATACTTCCTACGCATGCATGGCCTGGTTATGATTTCTTCCTCATTATAACTGAAACTGCTATGCGGTTGAGTAACGACGCGGTTTCTACTGCGGTCAGTACA----TATTTTAATATATATTTTAATATGTTTC
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2508986 159 +  4147112 ATAACACAATGGACTGTTCCAATTCTTGCGGTTTTTCCAACTCATTCCTGGCgtgatttcgatttttatttaCTCATTACTGAAACAGCGATGCGATTGAACAATGATCCGTTTTCTACAGCGGtaaccaaa-----aaaccaatagTTTTCATGATTCATAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   182569 158 -   375229 ATAGTAAAATGGACGATTCCATTATTAGGAGTTCTACCTACACATGCTTGGCCTGGGTTCACTTATTGGTTCATTGTGACAACATCTTCAATTCGGCTTACAAACGACAGTGTGTCTACCGCAGTACGTGAT-----GAACTATGAACCTTTAAAACACATAT-
i caeJap4.Scaffold17084 T 8969 C 0

a score=-3757.000000
s ce10.chrX              4258185 3 + 17718866 TCA
s cb4.chrX               9363532 1 + 21540570 C--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1217978 2 -  4500979 c-t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14741915 3 - 20921866 TGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509145 3 +  4147112 GCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182727 0 -   375229 C

a score=70711.000000
s ce10.chrX              4258188 106 + 17718866 AACTTCAGCTAATTGCCTACATTGACGGAATGTGTTGTTTGGTGACTTGTGCATTTTGTATGATTTGTTACATTATAACAATGATACTCATTAAAAAGAATTGGAA
s cb4.chrX               9363533 103 + 21540570 ---TTCAGCTTATATCATATGTAGATGGATTTTGTTGTCTAGCCACTTGTGTTTTCTGCATTATCTGTTATATAATTACGGGATTTTTGATCcgtaaaaattggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1217980 106 -  4500979 attttcagttgatatcCTATATTGATGGATTTTGTTGCTTGGTAACGTGTATATTTTGTATATCTTGTTATATCATAACTGGTTTtctcattcgaaaaaattggaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14741918 106 - 20921866 TCATTCAGATCATTTCTTACATTGACGGCGCGTGTTGTTTGGCTACTTGTATATTTTGTATTGTCTGCTACATTATCACGGGGGctttgatcagaaaaaattggaa
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509148 106 +  4147112 TGTTGCAGCTTATTTCTTACATTGATGGAGCATGTTGTTTGGCAACGTGTATATTTTGCCTCATTTGTTACATTATAACTGGGTTTTTGATtaggaaaaactggaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   182727 106 -   375229 ATTTTCAGCTCGTAGCCTACATAGATGGAATTTGCTGTGTAGGAACGTGCATCTTCTGCATGATTTGTTATATTGTTACGTGTTGTTTTATACGAAAAAACTGGAA
i caeJap4.Scaffold17084 C 0 I 556

a score=-3857.000000
s ce10.chrX              4258294 17 + 17718866 GAAA---AGCTCAAACACGG
s cb4.chrX               9363636 17 + 21540570 acgg---AATTCAACTACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1218086  3 -  4500979 acg-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742024 17 - 20921866 gaga---agTACAACCACAG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509254 17 +  4147112 acgaAACAGTACTACCA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182833 556 -   375229 I

a score=-4722.000000
s ce10.chrX              4258311 44 + 17718866 TACAAAATTTTCAGATTTTCAAATCAGAGGTGCGcggcaatttt
s caeRem4.Crem_Contig0   1218089 20 -  4500979 -----------cAGTTCTTCCA------------CTGTGAGAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742041 17 - 20921866 --------------TTCGTTC-------------CGGTGGTTTT
i caeSp111.Scaffold630  C 0 I 7
s caePb3.Scfld02_0       2509271 10 +  4147112 ----------------------------------CGGTAGTGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182833 556 -   375229 I
e cb4.chrX               9363653  0 + 21540570 C

a score=-5759.000000
s ce10.chrX              4258355 90 + 17718866 tcataattgccgattatcgaagttttcgaaaatcggcaagcgctaaaatttcccaaaaAAAGTAATATTTTCTGCAAATTTAGGCGCTTT
s caeRem4.Crem_Contig0   1218109 19 -  4500979 --------------------------------------------AGAT---------------------------AGGTTCATGCGTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742065  6 - 20921866 ------------------------------------------CTAGAC------------------------------------------
i caeSp111.Scaffold630  I 7 C 0
e caePb3.Scfld02_0       2509281  0 +  4147112 C
e caeJap4.Scaffold17084   182833 556 -   375229 I
e cb4.chrX               9363653  0 + 21540570 C

a score=-2964.000000
s ce10.chrX              4258445 41 + 17718866 TAAATTTGTTTTTATTGTTCACTTTTTAAGTTGAAAATTCA
s cb4.chrX               9363653 31 + 21540570 TAGGTTTATTCCtattgtgcaaa----------aaaattta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1218128 17 -  4500979 ------------TATtattttca----------caactt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742071 20 - 20921866 ---ATATGTTTTAggtgttcaaa------------------
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2509281  0 +  4147112 C
e caeJap4.Scaffold17084   182833 556 -   375229 I

a score=73701.000000
s ce10.chrX              4258486 262 + 17718866 AAAACCATCGAATGTTTTTTTTTTTCATATTTGGCAACTGTTGCAACTGCCCGAAATTTCCAATTACTGTTCATCCCTGCTATACCATTCAATTTTAAGGTCTTCAAGAAAACAGGCG------CAACTGCAGAACGAAGCCTATTCATTTCTTCATTTTTATCGTTTTGTGTCCTAATGCTAAACTTGACTGTGCAAATATTGAAAATTTGTATTTCTCTGGGTGGAATGACGAATATATTTTCAGTTTACGATGTTTCGTGAGTTT
s cb4.chrX               9363684 179 + 21540570 gaagc-----------------------------------------------------------------------------------------tTCAGGTGTTTAAAAAGTCTAGTTCACAATCATCCGCTGAAAGAGGTCTTTTTATATCTGCCGTATTATCGTTTTGTGTTTTGATGTTAAACTTGACGGTTCAAATACTGAAGATAATTATTTCCTGGAATGAAATGACGAACATTTTGGCCGCTTATGACATTTCGTGAGTGT
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig0   1218145 173 -  4500979 ----------------------------------------------------------------------------------------------ttcaggttttcaaaaaaaccagtACCCAATCGTCAGCTGAACGCGGTTTGTTTATATCCGCTGTTCTATCTTTCTGTGTTTTGATGTTGAATCTGACGcttcaaatattgaaaataataatttcctGGAATGGGATGACTAACATTTTCGCAGCTTATGATTTTTCGTgagtt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742091 160 - 20921866 ------------------------------------------------------------------------------------------------------------aaaactagtaCTCAATCATCAGCAGAACGAGGTCTTTTCATATCGGCCGTGTTGTCGTTCTGTGTTTTGATGCTGAACTTAACGATAcaaatcttgaaaataataatttcctGGAACGGAATGACAAACATTTTCTCTGCTTATGATATCTCGTAAGTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509281 207 +  4147112 AAAACAATCCAAAGTAT----------------------------ACTACTCGAAA---------------------------------CATTGttcaggttttcaaaaaaaccagttcACAATCATCAGCTGAACGTGGTTTGTTTATATCCGCTTTGTTATCGTTCTGTGTTTTGATGTTGAACTTGACGgtacaaatattgaaaataattatttcctGGAACGGAATGACAAACATATTTGCTGCGTATGATatttcgtgagttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182833 556 -   375229 I

a score=1401.000000
s ce10.chrX              4258748 47 + 17718866 ATCCAAAAACAAAAACCGTGACTTGTCTCACTAATCCCGGTAGTTGA----------------
s caeRem4.Crem_Contig0   1218318 58 -  4500979 ----gaaagaagaaaatgtgtcTTGTAGCACTGAACCCAATGATTTATTTTATCCATGTTGT-
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold630  14742251 49 - 20921866 GATTGAA--------------CCAGCCTTGTTGGACCCGGTGATTTactcaattcaaaatata
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509488 58 +  4147112 ttctgaa-----aacccgTGTTTTGTCTCGTTGAACCCAACACTTTACTCTATCCACGTCTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182833 556 -   375229 I
e cb4.chrX               9363863 64 + 21540570 I

a score=-8044.000000
s ce10.chrX              4258795 25 + 17718866 ----------------------------------AAATCGTT-GTAACTCTGA----ATTATAA
s cb4.chrX               9363927 25 + 21540570 ---------------------------------AGAACAGCCAAAAACTAA------CTTCCAG
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig0   1218407 31 -  4500979 ---------------------------------AGAACAGTCAACAACTAGAGGTTTATTCCAA
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold630  14742300 51 - 20921866 atCTAGTTGTTACGACTGGAAACA--AGCACAAAGAATAGTCAAAAACTGCGT-----------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509546 60 +  4147112 ATTTGGTTTT---GAGTAACAACAAGAGCACAAAGAATAGCCAACAACCACATTTG-ATTCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   182833 556 -   375229 I

a score=96853.000000
s ce10.chrX              4258820 119 + 17718866 TTTGTAGGTATCCCATGGTGGACTTAATGTACTCACATTATCCTTGGGTACTTCTCGTGACTTCATCTGTTCTTAGACGTCAACTTATATACGATGTGAAGATGCTTATAAGAAAGTAA
s cb4.chrX               9363952 119 + 21540570 TTTCCAGATACCCAATGGTGGACCTAATGTATTCACATTATCCCTGGGTGCTGATTGTGACGTCGTCAGTGTTAAGGCGCCAGCTTGTTTACGACGTGAAATTACTCATAAGGAAGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1218438 118 -  4500979 -TTCCAGATATCCGATGATGGACTTAATGTACTCACATTACCCTTGGGTTCTGATTGTGACGTCTTCCGTTTTAAGACGTCAGCTTGTTTACGACGTGAAGTTACTCATAAGAAAGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742351 118 - 20921866 -TTTCAGTTATCCAATGGTGGACTTAATGTACTCACATTATCCGTGGGTTTTGATTGTGACGTCTTCCGTTTTGCGACGTCAGCTCATTTACGACGTCAAATTACTCATCAGGAAGTAT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2509606 119 +  4147112 ATTTCAGGTATCCCATGATGGACCTGATGTACTCCCACTATCCTTGGGTTCTAATTGTGACGTCTTCTGTTCTTAGACGTCAACTCATTTACGACGTCAAATTGCTCATTCGAAAGTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   183389 119 -   375229 TTTTCAGGTATCCAATGATTGATTTGATGTACTCACACTTTCCATGGGCGTTGTTAGTGACATCAGGAGTTTTGAGGAAGCAAATTATTTAtgatacaaaaatttttttacgaacgtaa
i caeJap4.Scaffold17084 I 556 I 11773

a score=-5615.000000
s ce10.chrX              4258939 6 + 17718866 -GTGGAT--
s cb4.chrX               9364071 6 + 21540570 -GCAGAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1218556 4 -  4500979 -G--AAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14742469 6 - 20921866 -G--TCAAT
i caeSp111.Scaffold630  C 0 I 26
s caePb3.Scfld02_0       2509725 6 +  4147112 AG--ACAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   183508 11773 -   375229 I

a score=-4237.000000
s ce10.chrX              4258945 28 + 17718866 TTTTGTGTGC-GTGGGGG----------TCATAATGAAG
s cb4.chrX               9364077 25 + 21540570 -----CAGGG-GTTGAAGAA--------TTGTTATGAat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1218560 31 -  4500979 -----TAGGG---TGAGGGAGGGTACACTAGTAATGAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2509731 28 +  4147112 -ACTATAAAATATTGGAGTA--------TTGT--Cgaat
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e caeSp111.Scaffold630  14742475 26 - 20921866 I

a score=33142.000000
s ce10.chrX              4258973 121 + 17718866 TTAAACTTATAGCTCACTGAAACTGGACGAAGCATCAATGAGCCTGTCTCGTGGCGGACAAACGAATGCCGTCTCAAAAACGACACCTGC------AACTTGACCAA--------------ACAATTTTCGCTTTCGTTCT
s cb4.chrX               9364102 119 + 21540570 gcattttttcagcactttgAGACTTGACGAAGCCTCAATGAGCATGTCAAGAAATGGGCAAACGAATGCGGCATCAAAAACGGTTCCGGC------TACTTGAGcag--------------aaaatcttcttttttcat--
i cb4.chrX              C 0 I 1351
s caeRem4.Crem_Contig0   1218591 106 -  4500979 ATGAAATTTCAGTACTTTGAAATTGGATGAAGCTTCAATGAGCATGGGAAGAGCTGGACAGACGAATGGAGTATCGAAGACTTCACCTGC------TTCCTGA---------------------------TTTCTTCAT--
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold630  14742501 133 - 20921866 acaaaatttcagcacCCTCAAACTGGACGAGGCATCGATGAGCATGTCGAGAGTAGGACAAACACAAGGAGTGTCGAAGACATCACCTGC------atcttgaaaacaatttaaaaTGATCTGAACACGCATTATTTGT--
i caeSp111.Scaffold630  I 26 C 0
s caePb3.Scfld02_0       2509761 133 +  4147112 aaatattttcagcactCTTAAACTGGATGAGGCATCAATGAGCATGTCGAGAGTAGGACAGACTCAAGGAGTATCGAAAACGTCACCTGCGAcgtaatattcaaaaatgtttaaa------tgaatttctttttcctgt--
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084   183508 11773 -   375229 I

a score=603.000000
s ce10.chrX              4259094  95 + 17718866 ATATTTGGAAGAATAAAGACCACTTTGTTCTCATGTTTTTTATCTAGGATGCAATCTTTTTTCT--------TATTTCAC---GGTGTTTCTCTTTT--TTTTCCCGA
s caeRem4.Crem_Contig0   1218706 101 -  4500979 ACACGTGTctcaataaaaacatttgtCT-----TGTTTTTTATCTTGAAACAAATCTTCTTCCGACCGATTCCGCGTTTCCTGActtgttcattttc--ttttttcga
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold630  14742634 100 - 20921866 AAATTAAGAAGACTAAATTGTTCCTTTT-----CGGCCATTATCGTGAATAAAATCTATTTGTTCTCAAATTCACTTTCA---ACTTTGtcgttttctatttctccGA
i caeSp111.Scaffold630  C 0 I 311
s caePb3.Scfld02_0       2509894  71 +  4147112 A----------------------TTTGT-----TGCTGGTTATCTTGAATGACATCTTCCCTCTTTTCAATGTGTCTACC---ACTCTGTCTTTTTC-------CCGA
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I

a score=-215.000000
s ce10.chrX              4259189 4 + 17718866 TTTT-
s caeRem4.Crem_Contig0   1218807 4 -  4500979 gttt-
i caeRem4.Crem_Contig0  C 0 I 261
s caePb3.Scfld02_0       2509973 4 +  4147112 -TTTT
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I
e caeSp111.Scaffold630  14742734 311 - 20921866 I

a score=425.000000
s ce10.chrX              4259193 70 + 17718866 TTTCCTGATTCTTCAGTGGCTGCCTGCATAATTGCATAATTTCATTAGTTTAGTTTAGtttttttttaaa
s caePb3.Scfld02_0       2509977 58 +  4147112 CATGCCGAtttttttGCG-----TTAAATGAT------GTTTCATC-GTTCATTTCCGATAGTTTTTAAA
i caePb3.Scfld02_0      C 0 I 364
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I
e caeSp111.Scaffold630  14742734 311 - 20921866 I
e caeRem4.Crem_Contig0   1218811 261 -  4500979 I

a score=0.000000
s ce10.chrX              4259263 1184 + 17718866  
e caePb3.Scfld02_0       2510035  364 +  4147112 I
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I
e caeSp111.Scaffold630  14742734  311 - 20921866 I
e caeRem4.Crem_Contig0   1218811  261 -  4500979 I

a score=391.000000
s ce10.chrX              4260447 4 + 17718866 CCCA
s caeSp111.Scaffold630  14743045 4 - 20921866 CCCA
i caeSp111.Scaffold630  I 311 C 0
e caePb3.Scfld02_0       2510035 364 +  4147112 I
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I
e caeRem4.Crem_Contig0   1218811 261 -  4500979 I

a score=367.000000
s ce10.chrX              4260451 3 + 17718866 CTG
s caeRem4.Crem_Contig0   1219072 3 -  4500979 CCG
i caeRem4.Crem_Contig0  I 261 C 0
s caeSp111.Scaffold630  14743049 3 - 20921866 TTG
i caeSp111.Scaffold630  C 0 C 0
e caePb3.Scfld02_0       2510035 364 +  4147112 I
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I

a score=-3599.000000
s ce10.chrX              4260454 6 + 17718866 -CTGCAA-
s caeRem4.Crem_Contig0   1219075 6 -  4500979 CCGGCG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14743052 6 - 20921866 --TACAAA
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2510399 6 +  4147112 -CTGC-TG
i caePb3.Scfld02_0      I 364 C 0
e caeJap4.Scaffold17084   183508 11773 -   375229 I
e cb4.chrX               9364221 1351 + 21540570 I

a score=190887.000000
s ce10.chrX              4260460 425 + 17718866 GTCCGCAATGTGTCGTC-------AATTCCGATGTGTGCACCCGCGGTGACGTTTGCGGTACACACACGC---AAGTTGC----TAAGCCACACACGTTCGTCGACTCTATTTCTCGTCC----GTGCTCATTGA----TTTTTAGAACTTAAATTAGTTTTTACAAA----------------TAATT---------------TATTGTTAA-------TTTTCAGGTATGAAAACCGTAACCCTACTACTGGCGTTAATTAGCCATGTAGCCTCTAATCTTTTAATGCCCGGAATATACACAGAGGTTGTAGAAATTCAACAGGGAAAGGTAGAG-------------TTTTGTTAATCAAATTTTA-----------AAAATCAATCCTCATTTCTTTAGTATCAACTGATTGGAGTCCCACAAGCTGCTCTCAATGGAACGGTCGTTCAACTTGAATTCACATGTGATCCGGAAGTTGAACTTGAGTTTGATGTAAGTTTTCAGC
s cb4.chrX               9365572 414 + 21540570 GTCCGCAATGTGGCGTCTGTCGTAGGGTGTGGTGTATTCA-GAGTTGTGACGTTTGCGGCAGACTCt--------ttttt----cctgcgatccgcgt---tttgccgtttttcgcgttc----at-tttatcgagggtttttt----------gtttttttttcaat-----------------aatt---------------catg-------------TTTCAGGTATGAAGACCGTCGTCATCTTGTTGGCGATAATAGGCCATGCTGCCGCCAACCTTCTTATGCCCGGAATTTACACGGAAGTCGTGGAAATTCAACAAGGAAAGGTGAGT------------TTTTCGTGGAAACATGtgtattctg------aaaaagaaacgtGT-CATTTCAGTATCAATTAATCGGAGTACCACAAGCCGCACTAAATGGAACCATCGTTCAGTTGGAATTCACATGTGATCCGGACGTTGACCTCGAGTTTGATGTGAGTCATTAGG
i cb4.chrX              I 1351 C 0
s caeRem4.Crem_Contig0   1219081 421 -  4500979 GTCCGCAATATGTCGTC-------AAATCTGGTGTGTACA-CAACTGTGACGATTGCGGCACTCTGTCG----GGTTTCG----CAGACATTTAACGTTCGTCTGCTCTTGTCGGCACTC----At-tcaatcga----ttttt----------gtcACTTTCTCACA-----------------AATTatggctgaaaaatcattta-------------tttcAGGTATGAAAACCGCCATCTTCTTGCTGGCGATACTAGGCCATGCTGCCGCCAACCTTCTTATGCCCGGTATATACACAGAAGTTGTGGAGATTCAACAGGGAAAGGTGAGT----------------------AACAAGAATATGCTGActgcaaaaaatagaaattt-tgtTCTAGTATCAACTAATCGGTGTACCACAAGCTTCTCTCAACGGAACCGTCGTCCAACTGGAATACACATGCGATCCGGACGTGGAACTTGAATTTGatgtaagttttcaga
i caeRem4.Crem_Contig0  C 0 I 99
s caeSp111.Scaffold630  14743058 415 - 20921866 GTCCGCAATTTGTCGTG-------CACTCTGGTGTGTTCA-CATTCGTGACGTTTGCGGGACACACA--------TTTTT--CCTTGTCT-TGGATGTTCTCCAATATattttgtcgctc----tt-ttcatcga----ttttc----------ctg--ttttttattgttattttt------tcaatt---------------tttg---aa-------ttttcaggtaTGAAAACCGCCATCATATTGTTGGCGATAACAAGCCATGTGGTCGGCAATCTTTTAATGCCGGGAATTTACAcagaaattgttgaaattcaacaaggaaaagtgagt-------------tttgagcGAGACAATGTCATC---------AACacgaaaaattg-ttattcAGTATCAATTAATCGGTGTGCCACAAGCTGCTCTCAATGGAACAGTCGTGCAGTTGGAATTTACGTGTGACCCAGATGTTGAACTTGAATTTGACGTGAGTTGGCTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2510405 419 +  4147112 GTCCGCAAAGTGGCGTC-------AACTCTGATGCGTACA-CAACTGTGACGTTTGCGGCATATGCA--------TTTTTTCCCTCGGCTATCCGCGTTCGCCAGCTCTTTCCGCCACtc----gt-ttcattga----ttttc----------tttgcttttccgTTGGAATATac------ttag-t---------------tttg---aa-------ttttcaggtatGAAAACCGCCATCATCTTGTTGGCGACAATAAGCCATGTGGCTGCCAACTTGTTAATGCCGGGAATATACACGGAGGTTGTGGAAATTCAACAGGGAAAAGTAAGT-------------TTTCGTTGGAAT-TTTCCATC---------AGAACGAGTATTCGAACTTTCAGTATCAATTAATCGGAGTACCACAAGCTGCACTTAATGGGACAGTCGTTCAACTGGAGTTTACGTGCGATCCGGACCTTGAACTTGAATTTGACGTGAGTTTGTTTG
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084   195281 445 -   375229 GTCCGCAAAGTGTCGTC-------AAATGCAGTGTTTTCG-TGTTTGTGACGTTTGCGTATCATACACGCACACACTCCG----TCGCTGCTTAGCGTTCACCCAAGCAACCACTAGCTCTacttt-ttaatcga----ttttcag--------accgctttttaaaatcattattttGCTTATTGATT---------------CTTA---AGATTATTCGTTTCAGGTATGAGAGCCGCCATCGGTCTGCTGGCAATAATCAGCCATGCAGTTGCCAACCTGTTAATGCCCGGAATTTACACGGAGGTTATTGATGTTACACCAGGAAAAGTTAGTGAATCGttttatttctttgcggtttattattattttt----------------gttt-tctttcagtaTCAGCTCATCGGAGTGCCGCAAGCTGCTCTCAATGGAACGGTTGTTCAATTGGAATTCACGTGTGATCCGGACGTTGAACTTCAATTTGaagttagtttt----
i caeJap4.Scaffold17084 I 11773 C 0

a score=-16017.000000
s ce10.chrX              4260885 71 + 17718866 TAT-AAATATTGA-TTTTTT-TTTTTGAAGTAATTCAACTTCAT----CTAATTATTTTCCACTCGGACGTAA-CATGA-
s cb4.chrX               9365986 61 + 21540570 --TAGAAAATCGATACGCGC-TCT---A-----------TTTGTA-CGGTGTGTGTTTTACAGTCTGAAATGCTTGTAA-
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold630  14743473 61 - 20921866 TATGAAGCATTAA-ATgcct-tttttga-----------tttata---tCCATTGATTTAC--TTGACTAGACTAGTAA-
i caeSp111.Scaffold630  C 0 I 24
s caePb3.Scfld02_0       2510827 61 +  4147112 TATCGAATACTGA-ATGTTTATCGatga-----------ttcat----ttcttttctttcc--ttatAAACACTCATGA-
i caePb3.Scfld02_0      I 3 I 23
s caeJap4.Scaffold17084   195726 59 -   375229 --------tttaa-agattt-aatttaa-----------ataataaaagttggtgttttgaaaattaatacGTTGAAAGA
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   1219502 99 -  4500979 I

a score=29723.000000
s ce10.chrX              4260956 194 + 17718866 GTCAACTAT---------------TATTTC-------------GAAATCGATT------ATTCAAAC-TCCTCTTATCTATATTTTTTCTATA-GCTAT-AAT-----TTTCAGACTGAATTTGTCCTTCGCTCTTCGCCATGTGACAAGGAATTCTTTAACACGAAGGAAAACGAGAGACGCCAAAATCTGGTCAGAATATATG-AGCTGGAAGAAAAAAAA------AGTATTATT----------------------------------------------------GTTTT----
s cb4.chrX               9366057 252 + 21540570 GCCCA--GA---------------ATTTTCTCTATAAAAGTTAGAGAG--ACG------TTGCAATA-GATGAAATTCCTTATCTACCCTTCA-ATAAtcgctcaaaatttcagaccgaGTACGTGCTTCGCTCCTCGCCGTGTGACAAAGAGTTCTTCAACACCAAAGAAAACGAGAGGCGGCAGAATTTGGTAagt----------ttgaagaagaaaaat------aggacAATCTGTCCAAAGTTGTCCCATGAACTAGAACGAATAAAACGCAAAGCTCCGGTTAACCTG----
i cb4.chrX              I 10 I 279
s caeRem4.Crem_Contig0   1219601 170 -  4500979 gtcaa--aa---------------tgtttc-------------gaaat--att------tttccaTATGATGTATTTCAGAGGTTTCAATGCATATAACCGAT-----TTCCAGACCGAATATGTGCTTCGCTCCTCGCCATGTGACAAAGAGTTTTTCAACACCAAGGAAAACGAGAGACGCCAGAACTTGGTAAG-----------------------AAT-------GGACAATC----------------------------------------------------ACCGG----
i caeRem4.Crem_Contig0  I 99 I 25
s caeSp111.Scaffold630  14743558 176 - 20921866 --------a---------------tatttc-------------gaaat--actCTATCGATACGAGA-AATGCGTCTATTTGTTTA---TACA-------ATT-----TT--AGACCGAGTTTGTGCTTCGTTCTTCGCCATGCGACAAGGAATTCTTTAACACAAAGGAAAACGAGAGGCGACAAAATCTGGTAAGT--------TATTTCTGAC--TGAACGAATGGATAacaa-a----------------------------------------------------atctg----
i caeSp111.Scaffold630  I 24 I 4
s caePb3.Scfld02_0       2510911 187 +  4147112 --------aaaaaaaaggaacaattgTTAT-------------GAAat--atc------attcaaaa-tgaatttttattacCTCAAGGTACA-------AAT-----TTCCAGACCGAATTTGTGCTTCGTTCCTCACCATGCGACAAAGAATTCTTCAACACAAAGGAAAACGAAAGACGTCAAAATCTGGTAAAC--------AATTGTTGTCGATCAAC------ATAGCAATA----------------------------------------------------ATCTG----
i caePb3.Scfld02_0      I 23 I 9
s caeJap4.Scaffold17084   195785 181 -   375229 ------AAA---------------GATTTC-------------GCAAT--AAT------CGATGAAA-AGTTTTGATATCAATGTT---GACA---------T-----TTTCAGACAGAGTTTGTCCTCCGCTCGTCCCCATGCGACAAGGAATTCTTCAACACAAAAGAAACAGAGCGACGGCAAAACCTGGTCAGTTTTTAAGCATGTGATGTATTTAAAT------Acagcaaaa----------------------------------------------------atcgaaaat
i caeJap4.Scaffold17084 C 0 C 0

a score=314293.000000
s ce10.chrX              4261150 429 + 17718866 TTTCAGGTTTTCTACTTCAACGAAACAAATCAAAATCATATCCCTGATACATTCGATTACAACGAAATAGTGTACTACAAGTCTCCAGTGCAAACTATTTCCTGCAAAGGTTCTCATGGACGTTTCCTGTTCCCCAACCCAACTGGACCAATGGCAGTAAAACAAGTAACACCAGTACACGTAGACAGAGTAAAGAGAGATGC---TGGTCTTGGATCTTTCCATCCTGCACAGAGTATTCCAAGAGACGGAATTTATTACATGATAATTAAGGTAATCCTGGAAAACAATAACTT--GAAAGTATAACTCTAATAAAC-------TTCAGGTCGTCGGGAAGTCATTCCCATCTAGTCCGAATTCAAACACCAACGTCACAATTTCGGTGCAATGGAAAGCACCGTATGGGTATTTGTCTGCAATCGACTGGCCACTGCT
s cb4.chrX               9366588 426 + 21540570 TTTCAGGTGTTCTATTTCAACGAGACCAACCAAAACCACATCCCCGACGCTTTCGACTACAATGAGATAGTCTACTATAAATCGCCAATTCAAACGATATCTTGCAAAGGATCTCACGGGCGATTCCTTTTCCCCATCCCGACCGGACCGATGGCTGTGAAACAAGTGACACCAGTGCATGTGGATCGAGTGAAGAGGGACAC---CGGTCTCGGATCCTTCCATGCCGCTCAAACTATTCCACGGGATGGAATTTACTACATGATTATAAAGGTCAGC---------TTCAAAGT--AATAA-TCCAATCCAACAAGTAATGTGTTTCAGGTTGTTGGAAAATCCTTCCCATCAAAGCTAAATGCCAACACCAATGTCACCATCTCCGTTCAATGGAAGGCTCCATACGGATTCCTCTCAGCTATTGACTGGCCATTGCT
i cb4.chrX              I 279 C 0
s caeRem4.Crem_Contig0   1219796 424 -  4500979 ----AGGTATTCTACTTCAACGAGACAAACCAGAATCACATTCCCGACACGTTCGACTACAATGAGATTGTCTACTACAAGTCGCCGATTCAAACCATATCTTGCAAAGGATCTCATGGAAGATTTGTATTTCCCAGCCCGACTGGACCAATGACAGTGAAACAAGTGACACCAGTGCATGTCGATCGTGTGAAGAGAGACGCTAATGGGCTCGGCTCATTCCATCCAGCTCAAAGCATTCCACGGGATGGTATATATTACATGATCATCAAGGTAAGC----aggattttgaaataaaataatttccatttttcaa---------ttcaggTGGTCGGAAAGTCCTTCCCTTCGAATCAAAATGCAAACACCAATGTGACGATTTCGGTGCAATGGAAAGCGCCATATGGATTCCTTTCTGCAATTGACTGGCCACTGCT
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold630  14743738 383 - 20921866 ttgtAGGTATTCTATTTCAACGAAACCAACCAAAATCACATTCCGGACACCTTTGACTACAATGAGATTGTGTACTACAAATCACCAATCCAAACAGTATCATGCAAAGGATCTCATGGACGCTTCCTTTTCCCCAATCCAACTGGACCAATGACTGTCAAATCAGTAACTCCAGTGCATGTCGACagagtgaaaaaagatactTCTGGCCTTGTTTCTTTCCATTCGGCACAGAATATTCCAAGAGATGGAATCTATTACATGATCATCA----------------------------------------------------------AAGTTGTTGGAAAGTCATTCCCTTCGAACCCGAATGCTAACACAAATGTGACAATTTCGGTCCAATGGAAAGCTCCTTATGGCTTCCTGTCTGCAATCGACTGGCCACTTCT
i caeSp111.Scaffold630  I 4 C 0
s caePb3.Scfld02_0       2511107 429 +  4147112 TTGTAGGTATTCTACTTCAACGAAACCAACCAAAATCACATCCCCGACACTTTCGACTACAACGAGATCGTCTATTACAAGTCGCCAATCCAAACCGTATCATGCAAAGGATCTCATGGGCGTTTCCTCTTCCCGAACCCTACTGGACCAATGACAGCTAAAGCAGTTACACCAGTTCATGTCGATAGAGTGAAGAGAGATGCCTCTGGTCTTATTTCGTTCCATCCAGCACAGAATATTCCAAGGGATGGGATTTATTACATGATCATCAAggtgaaa----acaatgaaaacgt--GGAAA-GTTAAT--GACAAATTACG---TTCAGGTTGTCGGAAAATCGTTCCCTTCAAGTCTCAATGCCAACACCAATGTGACAATCTCCGTACAATGGAAGGCTCCCTACGGATTCTTATCAGCAATAGACTGGCCACTGCT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084   195966 380 -   375229 tttcagatcttCTATTTCGACGAGAGCAACCAAAATCACATACCCGATGCATTCGACTACAATCAAATCGTCTACTACAAGTCGCCTATCCAAACCATCTCGTGCAAAGGATCTCATGGAAGATTTGTGTTTCCCACTGCCAATGCTCCGATGGCTGTCAAAAATGTCACTCCAGTGCACGTGGATCGCGTGAAGAGAGACGT---TGGACTCGGATCCTTCCATACCGCTCAAAACATTCCACGGGATGGTATCTATTACATGATCATCA----------------------------------------------------------AAGTGgttggaaaatcatttccctCAAATCAAAATGACAATACAAACGTGACCATTTCGGTTCAGTGGAAGGCGCCGTACGGATTCCTCTCCGCTATTGACTGGCCACTCCT
i caeJap4.Scaffold17084 C 0 C 0

a score=1787.000000
s ce10.chrX              4261579 4 + 17718866 AAGG
s caeRem4.Crem_Contig0   1220220 4 -  4500979 TAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744121 4 - 20921866 TAGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511536 4 +  4147112 CAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   196346 4 -   375229 TCGG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9367014 0 + 21540570 C

a score=546.000000
s ce10.chrX              4261583 1 + 17718866 T
s caeRem4.Crem_Contig0   1220224 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 69
s caeSp111.Scaffold630  14744125 1 - 20921866 T
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511540 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196350 0 -   375229 C
e cb4.chrX               9367014 0 + 21540570 C

a score=-496.000000
s ce10.chrX              4261584 2 + 17718866 AT
s caeSp111.Scaffold630  14744126 2 - 20921866 AT
i caeSp111.Scaffold630  C 0 I 42
s caePb3.Scfld02_0       2511541 1 +  4147112 A-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196350 0 -   375229 C
e cb4.chrX               9367014 0 + 21540570 C
e caeRem4.Crem_Contig0   1220225 69 -  4500979 I

a score=140.000000
s ce10.chrX              4261586 53 + 17718866 TTCAACTTGAAAAAAT-ATATGCTAG-AATAAATAAGTCACTGAACGTTTTTTTT
s caePb3.Scfld02_0       2511542 40 +  4147112 --CAACTTGTTGAATTCAGACGCTAGTGATAAA-------------ATCTTTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196350  0 -   375229 C
e cb4.chrX               9367014  0 + 21540570 C
e caeSp111.Scaffold630  14744128 42 - 20921866 I
e caeRem4.Crem_Contig0   1220225 69 -  4500979 I

a score=0.000000
s ce10.chrX              4261639 533 + 17718866  
e caePb3.Scfld02_0       2511582   0 +  4147112 C
e caeJap4.Scaffold17084   196350   0 -   375229 C
e cb4.chrX               9367014   0 + 21540570 C
e caeSp111.Scaffold630  14744128  42 - 20921866 I
e caeRem4.Crem_Contig0   1220225  69 -  4500979 I

a score=-283.000000
s ce10.chrX              4262172 3 + 17718866 -TTA
s caeRem4.Crem_Contig0   1220294 3 -  4500979 TTT-
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold630  14744170 3 - 20921866 ttt-
i caeSp111.Scaffold630  I 42 C 0
e caePb3.Scfld02_0       2511582 0 +  4147112 C
e caeJap4.Scaffold17084   196350 0 -   375229 C
e cb4.chrX               9367014 0 + 21540570 C

a score=3820.000000
s ce10.chrX              4262175 4 + 17718866 CAGA
s cb4.chrX               9367014 4 + 21540570 CAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1220297 4 -  4500979 CAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744173 4 - 20921866 caga
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511582 4 +  4147112 CAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196350 0 -   375229 C

a score=109005.000000
s ce10.chrX              4262179 104 + 17718866 TTCTACAAAATCATGTGTGTCTTCTACTCGGCTCTAGCTCTCATTTGGGTTTACTGTTGCATTAAGTACTATCGTGATATTCTTCGAATTCAATATTGGATTGG
s cb4.chrX               9367018 104 + 21540570 TTCTATAAGATCATGTGCGTGTTCTACTCGGCGCTCGCCCTTCTCTGGGTGTACTACTGCATCAAGTACTACCGTGATATTCTTCGAATCCAATACTGGATTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1220301 104 -  4500979 TTCTACAAAATCATGTGTGTATTTTACTCAGCTCTCGCTCTTATTTGGGTATACTATTGCATCAAGTACTATCGTGATATTCTTCGTATCCAATACTGGATTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744177 104 - 20921866 ttctacAAGATCATGTGCGTGTTCTACTCGGCACTTGCTCTCATTTGGGTATACTACTGCATTAAGTATTACCGCGACATTTTACGCATCCAATACTGGATTGG
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511586 104 +  4147112 TTCTACAAGATCATGTGTGTATTCTACTCGGCATTGGCTCTTATCTGGGTGTATTACTGCATCAAGTACTACCGTGATATTCTTCGTATTCAATATTGGATTGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   196350 104 -   375229 TTTTACAAAGTGATGTGTGTTTTCTACTCGGCGCTGGCGCTCATCTGGGTGTACTACTGTATCAAACACTACAGAGATATCCTTCGCGTCCAATACTGGATCGG
i caeJap4.Scaffold17084 C 0 C 0

a score=-5615.000000
s ce10.chrX              4262283  8 + 17718866 TAAGATCT--------
s cb4.chrX               9367122  8 + 21540570 TTAG---TTCT-----
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   1220405  6 -  4500979 TAAG---TG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744281 10 - 20921866 TAAG---TA---GTTT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511690 11 +  4147112 TTAG---TA--TACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196454  0 -   375229 C

a score=-6131.000000
s ce10.chrX              4262291 25 + 17718866 TAAACGATTTACTGATTGAAATTTG------------------
s caeRem4.Crem_Contig0   1220411 17 -  4500979 --------TTATTGGGTTaagttta------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744291 20 - 20921866 ---------------GTAGTACTAATAGAAACgaa--------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2511701 28 +  4147112 ---------------GCAAAGATTTTGAGATGGGATAAACTTG
i caePb3.Scfld02_0      C 0 I 269
e caeJap4.Scaffold17084   196454  0 -   375229 C
e cb4.chrX               9367130 20 + 21540570 I

a score=-2879.000000
s ce10.chrX              4262316 41 + 17718866 AATTCCTTAACTTTGCTAGATGCCTGTAATTTC--attttaaa-----------------
s caeRem4.Crem_Contig0   1220428  8 -  4500979 -----------------------------------gttttgaa-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2511998 58 +  4147112 AACGCCTTGATCCTGACAGC--CTTGGCATTTGGTGTTTTAGAGTTAGGCAGCACTGAAA
i caePb3.Scfld02_0      I 269 C 0
e caeJap4.Scaffold17084   196454  0 -   375229 C
e cb4.chrX               9367130 20 + 21540570 I
e caeSp111.Scaffold630  14744311  0 - 20921866 C

a score=-3807.000000
s ce10.chrX              4262357 31 + 17718866 attatcaaaaacttaatattaa---ttaaaCAGG
s cb4.chrX               9367150 19 + 21540570 ----------AC-TAATATAAA---CT-TACAGG
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   1220436 16 -  4500979 --------------aattggaa---tt-ttcagg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744311 16 - 20921866 --------------aattcttg---tt-ttcagg
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2512056 32 +  4147112 AGTTCCTAACAA-TCATTCTTGCAACT-TACAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   196454  0 -   375229 C

a score=275031.000000
s ce10.chrX              4262388 276 + 17718866 CGGCGTCATTGTGCTCGGAATGGTGGAGAAGGCGTTCTTCTTGTCGGAATACGCAACCATGAACGACACTGGATCAAGCATTGACGGAATTCTGGAAGTGGCTGAAATTGTGTCATGTGCCAAGAAGACAATGTCAAGAGTGCTAGTGATAATTGTTTGCGTGGGATATGGAGTAGTGAAGCCAAGATTGGGGCAAACTTTGAATCAAGTCGCAGGCGTTGGTCTTGTTTATTTCATTTTCTGCTCAATTGAAGGAATTGCGAGAGTTTCCAAGGT
s cb4.chrX               9367169 276 + 21540570 AGCTGTCATTGTCTTGGGAATGGTTGAGAAGGCGTTCTTCCTGTCTGAATACGCTACAATGAATGACACCGGGTCGAGTATCGATGGAATACTGGAAATCGCAGAGATTGTGTCGTGTGCCAAGAAGACAATGTCCAGAGTACTGGTTATTATTGTTTGTGTTGGATACGGAGTGGTAAAACCAAGACTGGGGCAGACATTGAACCAAGTCGCTGGTGTTGGACTGGTTTACTTCATCTTCTGCTCAATTGAAGGGATCGCTAGAGTCTCCAAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1220452 276 -  4500979 AGCTGTTATTGTTTTGGGAATGGTTGAGAAGGCGTTCTTCTTGTCTGAGTACGCTACCATGAACGACACCGGATCGAGTATTGACGGAATCCTCGAAATTGCTGAGATTGTATCTTGCGCGAAGAAGACAATGTCGCGAGTTCTCGTGATCATCGTTACAGTTGGATACGGAGTTGTGAAACCAAGACTCGGACAAACATTGAATCAAGTGGCTGCTGTCGGTTTGGTATACTTCATCTTCTGCTCAATTGAAGGAATCGCTCGTGTTTCTAAGGT
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold630  14744327 276 - 20921866 aGCTGTCATTGTTCTTGGAATGGTCGAGAAAGCGTTTTTCCTCTCAGAATACTCAACTATGAATGATACTGGTTCGAGTATCGACGGTATCTTAGAGATTGCGGAGATTGTATCATGTGCCAAGAAGACAATGTCCAGAGTTCTTGTGATTATTGTATGTGTTGGATACGGAGTGGTGAAACCAAGACTCGGACAAACGTTGAATCAAGTAGCCGGAGTCGGTCTcgtttatttcattttctgttcaatCGAAGGAATCGCTAGAGTTTCTAAGGT
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2512088 276 +  4147112 AGCAGTCATCGTCCTTGGAATGGTTGAGAAGGCGTTCTTCCTCTCGGAATACGCTACCATGAACGACACTGGGTCTAGCATCGACGGTATTTTGGAGATTGCGGAGATTGTTTCATGTGCCAAAAAGACCATGTCAAGAGTGCTTGTGATCATCGTTTGTGTTGGATATGGAGTGGTGAAACCAAGACTTGGACAGACATTGAATCAAGTTGCTGGAGTTGGTCTCGTCTATTTCATCTTCTGTTCAATTGAAGGAATTGCGAGAGTTTCAAAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   196454 276 -   375229 AGGAGTCATTGTTTTGGGAATGGTCGAGAAAGCGTTCTTCCTTTCCGAGTACGCTACCATGAACGACACGGGATCGAGTATTGATGGAATTTTGGAAGTAGCTGAGATCGTGTCATGTGCCAAGAAGACAATGTCTCGAGTGCTGGTTATCATCGTTTGTGTTGGATATGGAGTGGTGAAGCCGAGACTTGGACAGACTTTGAATCAAGTTGCCGGTGTTGGActtgtttattttattttctgctCGATTGAAGGTATTGCGAGAGTTTCAAAGGT
i caeJap4.Scaffold17084 C 0 C 0

a score=422.000000
s ce10.chrX              4262664 1 + 17718866 A
s cb4.chrX               9367445 1 + 21540570 A
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold630  14744603 1 - 20921866 A
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2512364 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 252
s caeJap4.Scaffold17084   196730 1 -   375229 G
i caeJap4.Scaffold17084 C 0 I 7
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=546.000000
s ce10.chrX              4262665 1 + 17718866 T
s cb4.chrX               9367448 1 + 21540570 T
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold630  14744604 1 - 20921866 T
i caeSp111.Scaffold630  C 0 I 133
s caeJap4.Scaffold17084   196738 1 -   375229 t
i caeJap4.Scaffold17084 I 7 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-12122.000000
s ce10.chrX              4262666 185 + 17718866 ATT------------------------TGGAAGTTAATTTTTG------AAAAATC-------------ATAAGGCCGTCTTATAA-----------------------------------AAATAGTACTATTCTT----------------TTTGATCTTGGTGGGTTTGTGGCAAAGAGTTTTGTCAAATTCACTTC-------CGAAAAAGTTAAACTGACAGTCATCCCGAAAA------TATTATTTTTTTATTTCCT-------CTAGAAAGTACT-----TAATTTCCAAAAAA--AT-----------
s cb4.chrX               9367449 246 + 21540570 ATTTAGCTTGAAGTG------------TAGAGGTTGGTTTCGA------AAGaagcttgaaaaaagaaaacaatgtTGTTGGATAAGGAATGTACATTGTGGCTGACAATTGAGAAAAGACAACCAATAATATCTCTCGGAAGAGAACATAGACCTAAATTTGGAAAGCCTCAGTCagagaagttcgaaaatttgactACGATAGATCGAAAAAGTTTGTctgaca---------aaaa----------agttttctatc-----------------AGTAC------TAACAACTAGAAAGTCAT-----------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084   196739 252 -   375229 atttaaaataaattgttttttaccCTATTTAGGTTGTTTTTGGCGTCaaaaaaaTCCAGCGAAAATTC-AAAGAGtgatccgattg--------------gcctgaaactttggg------aaataatggca------------------------------aaaatactcctgaaaaaaatgtttttaaataaaatttc-------agaaaaaa--aattcgata---attttaaaaatcgatatctgGGTCTGCAATTTTCCGGGAAcgtccggaagtattttttctaatatttttcaaa--gtttcaagccaat
i caeJap4.Scaffold17084 C 0 I 121
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728  38 -  4500979 I

a score=-898.000000
s ce10.chrX              4262851 98 + 17718866 ATTTTCAATACAACTTATATATTATGCATTAAAGCTATTGGTGGTAGCGCAAATATGAAAATAAAAATTTTAACTG-GCTCAATTCAAAAGAGCGCTGA-
s cb4.chrX               9367695 89 + 21540570 ACCTTTTCCCGAATTCGTAGATTCAGC-----AGCTTCCTGT------CCTGAAATGAATGCAATGATGTTTACCGTTCTTAAACGGGACGTACGATGac
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeJap4.Scaffold17084   196991 121 -   375229 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=1110.000000
s ce10.chrX              4262949 11 + 17718866 CAAAATATATT
s cb4.chrX               9367784 11 + 21540570 caaaatcgatt
i cb4.chrX              C 0 I 33
s caeJap4.Scaffold17084   197112 11 -   375229 aaaaacatttt
i caeJap4.Scaffold17084 I 121 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-71.000000
s ce10.chrX              4262960 29 + 17718866 ACAAAAT----TTATCACTTTTTCAGTTAGGAC
s caeJap4.Scaffold17084   197123 33 -   375229 ccggAATAGTCCGACCATTCTTTGATTCCGaaa
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e cb4.chrX               9367795 33 + 21540570 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-27.000000
s ce10.chrX              4262989 28 + 17718866 -----------AATTTAACATTAATTCAATTGCAAAAAT
s cb4.chrX               9367828 22 + 21540570 -----------aatttga-att--tccaat---aaaaat
i cb4.chrX              I 33 C 0
s caeJap4.Scaffold17084   197156 36 -   375229 gttttccgaaaaaaacaacatt--tttatt-ataaaaat
i caeJap4.Scaffold17084 C 0 I 104
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-630.000000
s ce10.chrX              4263017 74 + 17718866 AAAGTTATGGCTTTT--AGCAGGTTTCCTAAAATACTTTAAAACCATATCTATTGCGACTGATCAAAATTTTGAAA
s cb4.chrX               9367850 51 + 21540570 aatttttgaatctcttaATCGACTTTCCTGAAAAAC-------------------------AGCAGactttcccaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeJap4.Scaffold17084   197192 104 -   375229 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-8782.000000
s ce10.chrX              4263091 171 + 17718866 AAAAAAACGCC-----TCATATAAAAAT------TAATTTTTCAACTTG-TCCGTATCGTA----TCGGCCGGAAATTATTTTTTAAAGA-------------AC-------CGTCTTTAAAGAATT----------------TGG------TATTTTAAATAGTTTCAGGCATTAA----------GCAGAATTTTTTTTTCAAAATCAT-CGAACAATATTGAAAAGGTG----TTTGCTGA
s cb4.chrX               9367901 218 + 21540570 aaaaaaccgacCTCTTTCATTTATAATC------AATATCCCTATTTTG-TCCGACTTGAAGTACTAAGTAAGTTATCAGCTCTTGAGCAGCATG------ATAC-------CGTCGTTGGCGCATTTTTCCAGCTTACTGGCTGG------TAGTTGCTATAGATCGAAACACAAAAACTTTTGACACGTAATGCTATTTAACTTGTcatacaaaaaatattaaaaacctGCCGATTTGCAGA
i cb4.chrX              C 0 I 83
s caeJap4.Scaffold17084   197296 202 -   375229 -aaaaaatagccgaaaccagtgaaaaattcagagaaaatttggagaatgctccga----------ttggcctgaaa----cttttagaaattatggaaaaaatacgcccggactttctcagaaaatt----------tcagatcggaaaaccgaatttaaaaattttcagaaaaatcgatatttcggtctaaaattttctggaaatgt----ccgaaagtatt-------------tttggcaa
i caeJap4.Scaffold17084 I 104 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728  38 -  4500979 I

a score=-960.000000
s ce10.chrX              4263262 41 + 17718866 TA--------------AGATTAGATCGAAGTAAGGTG--TTATTTTAAATAT---------------AATGC
s caeJap4.Scaffold17084   197498 71 -   375229 tacttcccaaagtttcaggata-atcggagcattttcgctTGTTTTAACTACTTTTGTTATTTTGTGAAtcc
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e cb4.chrX               9368119 83 + 21540570 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-3609.000000
s ce10.chrX              4263303 37 + 17718866 ---ACAAACTCGTTGTTAGGAAAAAATCGATAAAC-----------------ATACA-----------------
s cb4.chrX               9368202 52 + 21540570 ---aaaatttcactgggagcaaaaactttttcaactgtttcact--ttttcaatagt-----------------
i cb4.chrX              I 83 C 0
s caeJap4.Scaffold17084   197569 74 -   375229 aaaaaaagagaatagtTATCGAGAAACCAATCGAGAATATTCttgattttcaacaaaaaaccgCACTgatccca
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       2512365 252 +  4147112 I
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=-923.000000
s ce10.chrX              4263340 6 + 17718866 -TCTTCG
s cb4.chrX               9368254 6 + 21540570 -tttttt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2512617 4 +  4147112 ---TTTT
i caePb3.Scfld02_0      I 252 I 2
s caeJap4.Scaffold17084   197643 6 -   375229 attttt-
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold630  14744605 133 - 20921866 I
e caeRem4.Crem_Contig0   1220728 38 -  4500979 I

a score=546.000000
s ce10.chrX              4263346 1 + 17718866 T
s caeRem4.Crem_Contig0   1220766 1 -  4500979 t
i caeRem4.Crem_Contig0  I 38 C 0
s caePb3.Scfld02_0       2512623 1 +  4147112 T
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084   197649 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9368260 0 + 21540570 C
e caeSp111.Scaffold630  14744605 133 - 20921866 I

a score=394635.000000
s ce10.chrX              4263347 460 + 17718866 TCTTCCAGAACACGGTTGAGGCGACCCGACAAAAACAGTTCGCTGCTCTGCCTCTCGTACTCACCGAGATGATCATCTTCTATTGGATATTCACATCGCTGGCTTCCACAATCCGCATGCTCCGTCTCAAAAGAAACGATATCAAGCTCAATGTGTACCGTCATTTCGCCAACACTTTGGCGTTCTCCGTTATTGCATCAGTTATCTTCATGCTGTGGAGTATGATTTACCACATCTTCCCGACTTGTCGTGTTGATTGGAAAGAACTGTTAGT-TTGTATAAATCTTTAAAAATTATAAAA----A---CTTTTTTTGCAGGTGGGTCGACACTGCTTTCTGGCACGTGCTCTTCTGTTTTATCCTAGTTGTCATTATGATTCTCTGGCGTCCATCACAAAATAATCAACGATATGCTTTCACACCTCTTCTTGATGACAGTGAAGATGAAAACGATCAAGGTGAGC
s cb4.chrX               9368260 463 + 21540570 ttcttcagaacaCAGTCGAAGCTACTCGTCAGAAGCAATTTGCCGCTCTACCCCTCGTTCTCACAGAGATGATCATCTTCTATTGGATTTTCACCTCCTTAGCCGCTACCATCCGAATGCTCCGTCTGAAGAGAAACGATGTGAAGCTAAACGTCTACCGTCATTTTGCCAACACACTTGTATTCTCTGTGATCGCATCAGTGGTGTTCATGCTATGGAGTATGATCTATCATATTTTCCCAACGTGTCGTGTTGATTGGAAAGAACTGTGAGTATCA-AGAGATTGCTCGTTTGtactgaa----atttgatgattttcagttgGGTGGACACTGCTTTCTGGCATGTGCTCTTCTGTTTCATTCTGATCGTCATCATGATTCTCTGGCGTCCCTCACAAAATAATCAACGATACGCGTTCACTCCACTTTTGGATGACAGTGAAGATGAGAATGATCAAGGTGAGT
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig0   1220767 461 -  4500979 tctttcAGAATACTGTAGAAGCTACTCGTCAAAAACAGTTTGCCGCCCTCCCACTCGTCCTCACAGAAATGATTATTTTCTACTGGATCTTCACTTCTCTTGCTGCAACTATCCGTATGCTCCGTCTCAAGAGAAACGATGTGAAGTTGAACGTTTATCGTCATTTTGCAAACACCCTTGCCTTTTCGGTATTGGCTTCCGTGATTTTCATGCTTTGGAGTATGATTTATCATATTTTCCCAACATGCCGTGTAGATTGGAAAGAACTGTTAGTATCATAGTAGTCGCGTATTTTCacagaa----a--gaaattttttcagatgggtTGACACTGCCTTTTGGCACGTGCTTTTCTGCTTCATCCTGATCGTGATCATGATTCTCTGGCGTCCATCACAGAATAACCAACGATATGCATTCACACCACTTTTGGACGACAGTGAAGACGAAAACGATCAAGGTAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14744738 458 - 20921866 ttttttagaattccgTGGAAGCGACACGTCAAAAACAATTCGCCGCTCTCCCACTGGTGTTCACCGAAATGATAATCTTCTACTGGATTTTCACTTCACTGGCAGCCACTATCCGAATGCTTCGTCTCAAGAGAAACGACGTGAAACTGAACGTTTACCGTCACTTTGCCAACACTCTTGCTTTCTCCGTAATGGCATCTGTTATTTTCATGTTGTGGAGCATGATTTATCACATTCTCCCAACGTGTCGTGTCGATTGGAAGGAACTGTAAGTATTAAAAGAGGCG-------TGGAAGTATTATA--TATCTATTTTCAGCTGGGTTGACACTGCTTTCTGGCACGTTCTCTTCTGTTTCATCCTCATTGTCATCATGATTCTCTGGCGTCCATCTCAAAACAACCAACGATATGCATTCACACCTCTTCTTGATGACAGTGAAGATGAGAACGACCAAGGTGAG-
i caeSp111.Scaffold630  I 133 I 1
s caePb3.Scfld02_0       2512624 459 +  4147112 --TCTCAGAACACGGTCGAGGCCACTCGTCAAAAACAGTTTGCCGCTCTTCCACTTGTTCTAACTGAAATGATAATCTTCTACTGGATCTTCACTTCTCTTGCTGCCACCATCCGCATGCTCCGTCTCAAGAGAAACGACGTCAAACTCAATGTCTACCGTCACTTTGCCAACACTCTTGCTTTCTCTGTACTGGCTTCCGTCGTTTTTATGCTCTGGAGTATGTTGTATCACATTTTCCCAACATGTCGTGTTGATTGGAAAGAACTGTAAGTGAAATAAGGTTCATGTTTGTTgagagta----a--tttttttgtccaGGTGGGTTGACACTGCTTTCTGGCACGTGCTCTTCTGCTTCATTCTGATTGTCATCATGATTCTCTGGCGCCCATCACAAAACAATCAACGATATGCATTCACTCCACTTTTGGATGACAGTGAAGATGAGAACGATCAAGGTAGC-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084   197650 410 -   375229 ttttccagaactcGGTGGAAGCCACAAGACAAAAACAGTTTGCTGCTCTGCCCCTTGTGCTCACAGAAATGATAATTTTCTACTGGATCTTCACATCTCTCGCCGCCACAATCCGAATGCTCCGTTTGAAGAGAAACGACGTCAAGTTGAACGTTTACCGTCACTTTGCCAACACCCTCGCATTCTCTGTGATCGCCTCCGTCATCTTTATGATCTGGAGCATGACTTACCACATCCTACCCACATGTCGTGTTGACTGGAAAGAGCTGTGGGT--------------------------------A----------------------GACACTGCTTTCTGGCATCTTCTCTTCTGTTTTATCCTTGTCGTCATTATGATTCTCTGGCGCCCGTCTCAAAATAATCAGCGTTACGCATTCACTCCACTTCTCGATGATAGCGAGGATGAGAATGATCAAGGT----
i caeJap4.Scaffold17084 C 0 C 0

a score=-30438.000000
s ce10.chrX              4263807 147 + 17718866 ATTGGATGTTAAAGTTTGAGTATGCATCTATTGTAGTCCAAAAAGACATATGACCATAGTAAATCACTTCAAACGT--------TATCAATTTCAATTTTCAATTTTCACAAAAAAATCTAATCTTTAACTAACATCAATCAAATACACTCTTCA
s caeRem4.Crem_Contig0   1221228  38 -  4500979 -----------------------------------------------------------------------GGAGT--------TGACAGCTAC-----------------AAAGCATCCAATTTGTGCGtcat---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14745197  34 - 20921866 ------------------------------TT------------------------------ATCA-GCTAAACGC--------TGG-----------------------------ATAcaattttccgttt-----------------------
i caeSp111.Scaffold630  I 1 C 0
s caePb3.Scfld02_0       2513084  46 +  4147112 ------------------------------TT-----------------------------------TCTCAATGT--------TGATa--------------------------cataaacttttttggttaa-------aaatgCAATCT---
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084   198060  46 -   375229 ------------------------------------------------------------------------ATGTGGTTTGGCTGACA------------gatggttttgaaaatgaccatttttttgt-------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX               9368723  45 + 21540570 I

a score=118642.000000
s ce10.chrX              4263954 146 + 17718866 TTCAGACGAAATTTTCAACGCATTTGCTCCTGGATACGATATTCTCACCGCCCGGACATCTGGATCTGGGGCTGAAACTAGAAAACTTAGAGAAGCTGAGAAGGAGCAAGAGAGAAAAGATGAAGCTATTAAGGTTTTTGTACAAT-------------
s cb4.chrX               9368768 131 + 21540570 TTCAGATGAAATCTTCAATGCTTTCGCCCCTGGATATGATATTTTGACTGCTAGAACATCTGGATCCGGCGCCGAAACTCGCAAACTCCGTGAAGCCGAGAAAGAGCAAGAGAGAAAGGACGAGGCCATCA----------------------------
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0   1221266 131 -  4500979 ttcagatgaaattttcaatgcGTTTGCACCTGGATACGATATTCTGACAGCGAGAACTTCCGGATCTGGTGCGGAGACTCGCAAACTCCGTGAAGCTGAGAAAGAGCaagaaagaaaagatgaaGCAATCA----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold630  14745231 129 - 20921866 --cagATGAAATCTTCAATGCGTTTGCCCCGGGATACGACATTTTGACTGCAAGAACCTCTGGATCTGGAGCCGAAACACGTAAACTCCGTGAAGCTGAGAAGgaacaagagagaaaagacgaAGCTATCA----------------------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2513130 131 +  4147112 TATAGATGAAATCTTCAATGCATTCGCTCCTGGTTACGACATTTTGACTGCTAGAACCTCTGGATCCGGTGCCGAGACTCGCAAACTCCGTGAAGCAGAAAAGGagcaagaaagaaaagatgaggCAATCA----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   198106 144 -   375229 tttagatGAGATTTTCAACGCATTCTCCCCAGCGTACGAAGTTCTTACCGCAAGAACGTCTGGATCTGGTGCCGAGTCTCGAAAACTACGGGAGGCTGAAAAGGAGCAGGAGAGGAAAGATGAAGCTATCA---------------AGGTTAgtttaat
i caeJap4.Scaffold17084 C 0 I 898

a score=133192.000000
s ce10.chrX              4264100 388 + 17718866 TTTTGATTAAATATTTC-ATGCGTATC---TTTCAGGAGGACTTGAAATGGATTGAGGAAAATATTCCGACAACACTGGCTGATACACTTATCGGAGGTCTGGATGACAATGAAGAATTCGAGTCAAAACAGCTGGAAGTTAGCAAGATGTTATAATTT--------GGTA-CCTGTGTCATTG--TTCTTTCTC------ATT--TG-----ACGTCATGTTATGCATTCCATCGAT-----TCACAATGTT--CTTCAAAAA-ACTCGT---------------------TACTTTATAATTA-----------ATTTAGTGCAATACGGTTAGTCCGTGTGTG----TTCTGCAATT-----------CAAA-TTTCACGTGGTGTATAGTTTTATACGGATGGTCCTTTATCTTTTGACTAAATGTTCGTTCGAAAGTTTGTA------TTTTTATTGT--AAATTTTTTGAATGC--------
s cb4.chrX               9368899 387 + 21540570 ----------------------------------AGGAGGACTTGAGATGGATAGAAGAGAACATTCCAACCACTTTGGCTGACAC-TTGATTGGTGGTCTTGACGAAAACGACGAAATTGAATCGAAGCAGCTGGAAGTCAGCAAAATGTTGTAAATT--------A----CGTGTGTCATCC--CCCGAGTTGAATATAACT--TA-----ACGTT-TTT--GTTGTTGCATTCATGTTGCTATATACATT--TGTCTGATTATCTCTTCTCACTATACAGACTTTATTACCTTTTTTGACTCTATCAATCTTAATTAGGTGCAATACGGTTAGTCCGTGTGTATTGTTTTTGCAATT-----------CAAGTGTATACGTGGTGTATAGTTTTATGCGGATGGTCACTCAT--------------CTCGGACCAATTCTTTCA-------GTTGTTTGATGTAATTTTCTTAAAAC--------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   1221397 363 -  4500979 ----------------------------------AAGAGGACTTGAGATGGATTGAAGAAAACATTCCAACAACTATCGCTGATACTTTGATTGGTGGTTTGGACGACAATGAggaaattgaatcaaaacaaCTGGAAGTTAGCAAGATGCTATAATTC--------ATCattttattccattt--cttttgttg------att--tg-----acaag-ttt--tgCATTCCATTgatcctcttctcttttttc-tctttgatt-tcttttGTCA------AGTATCTATTTTCCCCCTTAACCC-----------GTTAGGTGCAATACGGTTAGTCCGTGTG------TTCTGCAATT-----------CAAA-ATTCACGTGGTGTATAGTTTTATACGGATGGTCGTGTATA-------------TTTAGaccaattctcaaa-aaaagtgttattt----ttattttttgaaa----------
i caeRem4.Crem_Contig0  C 0 I 7321
s caeSp111.Scaffold630  14745360 355 - 20921866 ----------------------------------AGGAAGATTTGAGATGGATTGAAGAGAACATCCCAACTACTCTTGCCGACACACTTATTGGTGGATTAGATGATAATGAAGACACCGAGTCAAAGCAGTTGGAAGTCAGCAAAATGTTATAAATT--------GATA-TCTGTGTCATTA----ACTATTG------ATT--TG-----ACTAT-TGTAATGCATTCCAACCAT----CTCCGcttatt--ttttcgatc-aaTTATGT------------TTCTTTGATTCTCTTAATTC-----------ATTAGGTGCAATACGGTTAGTCCGTGTG------TGTtgcaatt-----------tgaa-attcacgTGGTGTATAGTTTTATACGGTTGGTCCCTTATATTGT---TCATTGC-CGGACCAATGTTTGTA------TGTTAATTGA--TTGTTGGCTGA------------
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2513261 344 +  4147112 ----------------------------------AGGAAGACTTGAGATGGATTGAGGAAAACATTCCATCTACTCTTGCTGATACTCTTATTGGTGGATTGGACGATAATGAGGAGATTGAGTCGAAACAACTGGAAGTCAGCAAAATGTTGTAATTT--------GGTC-CCtgtgtcatcatttttctttta------atttctG-----ACTAT-TGTAATGCATTCCGGGAAT----CTCT-----CT--TCTTTAATT-ACTCAT-------------------------TCTCATCCC-----------TTTAGGTGCAATACGGTTAGTCCGTGTG------TCTTGCAATT-----------TAAT-TTTTACGTGGTGTATAGTTTTATACGGACGGTCCTTTATAATTT---TCATAGCTTGGGCCAACACTCCTA------TTTTATTTAA--TTGTTGATTCT------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   199148 421 -   375229 TTTTGATTAACcatttctatattttttccatttcaggAGGATCTCAAATGGATTGAAGAAAATATCCCAACTACTCTGGCTGATACTCTTATTGGTGGATTGGATGACAATGAAGAATTTGAAGCAAAACAATTGGAAGTTAGCAAGATGTTGTAATTTTCAACCCCGATC-CCCGTGACACTTTACCTTACCTA------ACA--TGGATGTACAGT-TTTGAAGCATTCC-TCGAT----TTCCCCATTTTCAGTCTCAATT-ATTTTG---------------------AAAGTTCTATCCT-----------TACTAGTGCAATACGGTTAGTCCGTTT-------TTCTGCAATTACTCAACAAAAAAGA-ATCCACGTGGTGTATAGTTTTATAAGCACGGTCCAttttttttA---------TCCGGACCAATGTTTATGCGAAAATCTTAATTAT--TGAATCCTTATATTTATACATAC
i caeJap4.Scaffold17084 I 898 C 0

a score=-6387.000000
s ce10.chrX              4264488 20 + 17718866 GATAATAATAGCTTATTTTG-----
s cb4.chrX               9369300  6 + 21540570 -----tacgaa--------------
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold630  14745715 19 - 20921866 GA-AATCCTAAAGcgttttg-----
i caeSp111.Scaffold630  C 0 C 0
s caePb3.Scfld02_0       2513605 18 +  4147112 G--AGTTTAAATGCGTTTTA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   199569 19 -   375229 ------ATTGATATATCTTGTTTtg
i caeJap4.Scaffold17084 C 0 I 3447
e caeRem4.Crem_Contig0   1221760 7321 -  4500979 I

a score=-2755.000000
s ce10.chrX              4264508 29 + 17718866 GTGTGTTGTG-------------------CTTACTTAATGATTTGTGA-
s cb4.chrX               9369306 27 + 21540570 aaaaact----------------------tttgtttgCTTATAtatgga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold630  14745734 29 - 20921866 aaacatttcg-------------------tTTATTTGTTCAATTATAA-
i caeSp111.Scaffold630  C 0 N 0
s caePb3.Scfld02_0       2513623 48 +  4147112 AACTACTTGATAACTTGTTTTCCTTTGGTTTTGATTATTACATTGTAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   199588 3447 -   375229 I
e caeRem4.Crem_Contig0   1221760 7321 -  4500979 I

a score=-129.000000
s ce10.chrX             4264537 13 + 17718866 ATAAAGAAAATGA----
s cb4.chrX              9369333  7 + 21540570 ------aaaatga----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2513671 13 +  4147112 ----atgaaatgattga
i caePb3.Scfld02_0      C 0 I 3230
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=640.000000
s ce10.chrX             4264550 52 + 17718866 AGATAATCATATCAAATAAATAATTGCAGATTTTTTAACTTTTAAAGTTGTT
s cb4.chrX              9369340 35 + 21540570 agtttttcgaacc-----------------tttttcaattgttaaagttatt
i cb4.chrX              C 0 I 2392
e caePb3.Scfld02_0      2513684 3230 +  4147112 I
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=0.000000
s ce10.chrX             4264602 442 + 17718866 GGAACTTATTTGGTAGCCGACCCAGAGGGTAAAACTGGTAATTTTCTAACCAGTGAAAATAAAAACACAACCAAATGTCACGTTTGTTTAAAAATTACCACATTTTAAAAATATTTTTCTAGTCGCGCAACGTTCTCCCAACGCTATTGCTCAATGTCGCCCAATTCACCGATTTCATGAGGATTTTTAACAGGTGTGAATTAACTGGTGCCTGGAAACATTTTAAAATCTCAAAATCAGTTTGATGAAATTAGTTACCTATTTTTTCAGTTGACATTAAAAACTTCCACAATTTTCAAACTTCGACAATATTACTCAAAAAATGTTTTCTAGTTCTCACAATTCAAAGTGGACTGTTAAATAAAATAAGTACGACGATGTTCCCACAAATGTAACCGTGTTTCATTTCAGCCGTTTCAATGTTTACCACAAAGTGCTTGTT
e caePb3.Scfld02_0      2513684 3230 +  4147112 I
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e cb4.chrX              9369375 2392 + 21540570 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=1716.000000
s ce10.chrX             4265044 343 + 17718866 TGTTTGTTGGGGCTTGTCATTAATCTGTAACAAA-------GCTGTAATAATATGCATTTCTGATAATGTAAGCGCCAATAACAGTACAAAAATAA--ACTTCATACAATATTCTACATAGAAAGAAAATGCATGGATGTGCTTAAAGATGTATTGGTCACGAAAAAGCGGCCAAAGCTTAAAGCTTAGAAGTTGAAAGAATACAGTGCCCAA-----GTTCTAGGCAGTGTGCATTCACA---------------------AAGTGAGCAATGAAAACAAATCAAATTTATATGTCAACGAAACTTT---AACTGATGAAGCT-----------TTGATTATTTTAAATT---CAACATTTTTTTAAACACTTAGTTTACAGGCAAAAGTTTTT
s caePb3.Scfld02_0      2516914 358 +  4147112 TGTTTGTTCCAAACATTCATGAATCTGAAACGATTGTTTGTGATGTAACAGTATGCATTTCAAATGCAACAAACATTCATGACagtacaaaaacaacaaatacaTTGTGTATTCta------ggaaaaatgcaa----------aagaaagcgatagtttctgaaaaa-gaccATCGATCGG----TAGAACTTCAAATAACACAtcttcaaaataaagttttcgatACTGTATAGACATATTCCAGCCTTcgtgaaagaaaaagtgagcaTCTCTAACAACT----------TGTAAGTAAAACTGTTCCAATTAACAATACTGATCTCTTGTTCTTACTAGTTTATGTTACTTAAGGTATTTTCACTTTCCTAGTTCCCA------AATGTTT
i caePb3.Scfld02_0      I 3230 C 0
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e cb4.chrX              9369375 2392 + 21540570 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=273.000000
s ce10.chrX             4265387 2 + 17718866 -----TC
s caeSp111.Scaffold622     1589 2 +   386604 -----TC
i caeSp111.Scaffold622  N 0 C 0
s caePb3.Scfld02_0      2517272 7 +  4147112 TGTCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e cb4.chrX              9369375 2392 + 21540570 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=19176.000000
s ce10.chrX             4265389  99 + 17718866 TAACACGAACGGAAGGTACAAGTCCA--AAGAATTGAGTTTCG-CTTTCGTTTCATCTTACTCTTC------------AGTCACGTGAACTATCTCTGCGCGGTCACGAAATTC
s cb4.chrX              9371767 103 + 21540570 TGACACGAACGGTGCAGTGCAGTTCAATGAAAACGAAACGTCGGTGTCTGTTTCATCTTATTTTGCCATCTCT---AGTATCACGTGAACCATCATT-----GGCgcgaaa---
i cb4.chrX              I 2392 C 0
s caeSp111.Scaffold622     1591 109 +   386604 TGACTCGAACGTTTAAGtgaattcg---aaaagtgaAAGGTCG--CTTTGTTTCATCTCACTTTCCCATCTATATCAAAATCACGTGAACCGTCTTTGCGCGGTcacaaaattc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2517279 109 +  4147112 TGACCCGAATGTTCAAGTGAGTTTC---GAAAGTGAGAAGACG--CTTCGTTTCATCTCACTTTCCCATCTATATCAGAATCACGTGAACCATCTTTGCGCGgtcacaaaattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  199588 3447 -   375229 I
e caeRem4.Crem_Contig0  1221760 7321 -  4500979 I

a score=24450.000000
s ce10.chrX             4265488 72 + 17718866 AGATTT-GCAACGTC-GAGTCGTAACATGTTAC------ACAAATTGTTTTC--ATAATGAGATGTACGTATGCATGCCTGC
s cb4.chrX              9371870 71 + 21540570 ---------atttccgaatttcaaacttcatgTGTTAcaacaaattgttttttaatagTGAGATGTACATTTGCATGCC--C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1229081 70 -  4500979 AGAATC-GCACCTTTGAAGTTGTAACACTTTGC------ACAAATTGTTTTT--ATAATGAGATGTACGTATGCATGTC---
i caeRem4.Crem_Contig0  I 7321 C 0
s caeSp111.Scaffold622     1700 70 +   386604 agaaat-gtcACACTCGAGTTGTAATATGTTAC------acaaattgttttc--ataatGAGATGTACGTCTGCACGTC---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2517388 72 +  4147112 tgaattcgtAACACTAGATTTGTAATATGTTAc-----aacaaattgttttt--ataATGAGATGTACATTTGCATGTC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  199588 3447 -   375229 I

a score=332984.000000
s ce10.chrX             4265560 453 + 17718866 ATCTTCT--------TCATAGTCAGTTCGTCGTCTTCTTCTCA---AGTAGTC-AATGCAAAAATGCA---------------------GAA-GAAGCCTT-CGGATGAGTATTTGAGAAGAAGGCGCAAAATAGCGTGAAACAGCCGTCGG---CATCATACAATCGTAAGTGGGAGGAGACCTCCTCCCTCCCACCGGACGGCGCACGCAACAGCCCGTAGACA-GAAGAGACGCAGAGGTACGACCTAAAGGTGA-AATGGAGTGCGGACTGGCGTGGAGACGCAGC--CGAATGAAGAGACTGGGTAGGACAACGGCACAAAGACAGCTAGCAGTCACTCAGCTGATCATACCGAACTGCGGTCCTGCTGCCTGTCCTTACCG-----TCATGGAAGAA---GGCTGCAGCACACTGGTGAGAAGCCTCGAGCAAAAGTATCTCGACGATGATGAGGAT---ATTGTTCAAGACATTATTTTCACAGGATTTGTGAGTTTT-T
s cb4.chrX              9371941 427 + 21540570 CTGGTCG--------TTTTTGCCA------------CTTCTCA---AGTAGTC-GATGCAAAAATGCT-------------------------GAAGCCTT-CGGATGAGTATTTGAGAAGACGACGGAAAATAGCGTGAAACAGCCGTCGG---CATCATACAATCGTAAGTGGGAGGAGAC---------CCGA--GGACATCGCACGCAACAGGCAAAAGA---CACGAGACGCAGCGCGTCGACCTGAG-GAAACTAAAGAGaataggaagaagaagagacgcagagtgaaAGGAAGAGACTGGGTAGGACGACGGCACAAAGACAGCTAGCAGTCACTCAGCTGATCATACCGAACTGCGGTCTGGCTGTCTGTCTGTACCG-----TGATGGAGGAA---GGTTGCAGCACGCTGGTCCGAAGTTTGGAGCAAAAATAtcttgatgatgatgatgac---gtggtACAAGATCTTCTTTTCACCGGATTTGTAAGTTTC-C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1229151 436 -  4500979 ---------------TGCTTGCCAGTTCG------TCTTCTCA---AGTAGTC-AATGCAAAAATGCT---------------------GAAGGAAGCCTT-CGGATGAGTATTTGAGAAGAAGGCGCAAAATAGCGTGAAACAGCCGTCGG---CATCATACAATCGTAAGTGGGAGGAGACC-------TCCGACCGGACGGCGCACGCAACCCGTTGAAG----CAAGAGACGCAGAACAACGACCTGAGAGTGAGAAAGGAGTGCGGAAGGGCGTAGAGACGCAGA--AGAATGAAGAGAC-GGGTAGGACGACGGCACAAAGACAGCTAGCAGTCATTCAGCTGATCATACCGAACTGCGGTAGTGCTGCCTGTCTGTACCGTCCCATTATGGAAGAA---GGTTGCAGCACATTGGTACGGAGTCTCGAGCAGAAGTACCTGGATGATGACGATGAC---ATTGTCCAGGACATCTTATTTACTGGATTTGTAAGTTTC-T
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold622     1770 437 +   386604 ---------------CTTTTGccgattca------ttttcttaaGGAGTAGTC-TATGCAAAAATGCT---------------------GAA-GAAGCCTA-CGGATGAGTATTCGAGAAGAAGGCGCAAAATAGCGTGAAACAGCCGTCGG---CATCATACAATCGTAAGTGGGAGGAGACCT------TCCGACCGGACGGCGCACGCAACAAGCCGTAGACCTTGCGAGACGCAGACAAACGAcctgagaatgaaaaagaagtgtaGAAAGGCGTGGAGACGCAGC--AGAATGAAGAGAC-GGGTAGAAAGACGGCACAAAGACAGCTAGCAGTCACTCAGCTGATCATACCGAACTGCAGTCCTGCTGTCTGCCTGTACCG-----TCATGGAAGAC---GGTTGCAGTACCTTGGTACGGAGcctcgagaaaaaatatctaGACGATGACGATGAA---ATTGTACAAGGCATCATATTCACCGgttttgtaagtttt--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2517460 435 +  4147112 ---------------TCTTTGCCAGTTCA------GCTTCTCAAGAAGTAGTC-TAtgcaaaaatgtt---------------------gaa-gaagcCTT-CGGATGAGTATTTGAGAAGAAGGCGCAAAATAGCGTGAAACAGCCGTCGG---CATCATACAATCGTAAGTGGGAGGAGACC-------CCCGACCGGACGGCGCACGCAACAGGGCGcagac--gaagagacgcagaaaaccGACCTGAGTGAAATAAAGGAGCGTCGGAGGACGTGGAGACGCAGA--ATAATGGAGAGAA-GGGTGGAAAGACGGCACAAAGACAGCTAGCAGTCACTCAGCTGATCATACCGAACTGCGGTCTTGCTGTCTGTCTGTACCG-----TCATGGAAGAA---GGTTGCAGCACCTTGGTGCGGAAATTGGAACAGAAATATCTAGATGATGACGACGCC---ATCGTTGGAGACATCATTTTCACAGGATTTGTAAGTTCTA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  203035 448 -   375229 ATTTTCTTCCGACTACTTTTGCTGCTCTG--------TTCATA---GGAAGTCAAATGCAAAAATTCTgctgaagaagaaaaagcagAAGAA-GAAGCCTCACGGATGAGTGT--GAGAGAAAGGCGAAAAATAGCGTGAAACAGCCGTCGGCATCATCATGCAATCGTAAGTGGGTGGAGAC---------CGGACCGGATGGCGTACACa---------------c---agacgcagagaagcgaccTGAGAGGAGAAACGCACTGAGAAAAGGTCTCGAGACGCAGA--CTCGCGGACAGAC-GGGTACGCCAGAGGCACACAGACAGCTAGCAGGCACTCAGCTGATCATACCGAACTGCCGTCGCTCTGCCTG--------------TCATGGAAGAAGGTGGTTGCAGCACGTTGGTCCGGAGACTGGAGCAAAAGTATCTGGATGATACGGATGACTCGATTGTCAAAGAGATACTATTTACTGgatttgtgagtttt-t
i caeJap4.Scaffold17084 I 3447 I 11

a score=-11566.000000
s ce10.chrX             4266013 33 + 17718866 TGAAAT--TCAAACTGATCTTCTAACAGTG---------------CATCT-
s cb4.chrX              9372368 40 + 21540570 --------TAGATCCAGTTTCCCCTACCTAGACA--AATCTGTGTCAAAT-
i cb4.chrX              C 0 I 26
s caeSp111.Scaffold622     2207 41 +   386604 -tagATCCTAGACCTG--TTTCCATATATG------AGACTGTTACATAT-
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0      2517895 35 +  4147112 -CATGTCCTAAATCTA----TCCATCCATG----------TCTAACATGT-
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  203494 51 -   375229 TGAATTTATGAAAGGGGtctttaaattttgaacgttgattttttgtatttt
i caeJap4.Scaffold17084 I 11 C 0
e caeRem4.Crem_Contig0  1229587 51 -  4500979 I

a score=213494.000000
s ce10.chrX             4266046 363 + 17718866 TCCAGACGGGTTGCTCGCCATGTAAGATGGCAAGCCAGAGAGCCCTAGAACTTCTTGTGCTGAACAACATGAACATTGACACAATCGGCGATTCCGAAAAGTTGGCCACCCTAGCATCCCATGTTTCTGAGGTA---GGGA----------------------------------------C--AACTTGTCCATTAGAA----------------TGAAAAATCACAATGTTTTCGTTGTGTTTTCCATTTTGTTTTTATTTTTTCTTCTTCTCTTCTTGTTTTCCCTT-TCGTTCAAAAAGCCCAGAGGGCGC-----CCCACAGCTGAGAAAAAGAAAATGATGGGAGAC------CC-------------------GCGTCACATGTGTTTTGGCATTTCCTGGATTGAAA--AGATGAATTGTCAGAAC-----------------------ATGATAAGATATCAGTGATCATC
s cb4.chrX              9372434 412 + 21540570 TCCAGACTGGTTGTTCACCATGCAAAATGGCTAGTCAGCGAGCTCTGGAACTATTAGTTCTTAACAATATGAACATTGGTACCATTggagattccgaaaaattggcCACATTGGCATCCCATGTTTCCGAGGTA---GGAGAACTTGTTCTTCCTTGTCtttttccatcttct---tctttccacATGTGTCCATTAGAACCCCTGTCATTAGGATTGAAAAATCgttgtgttttc--------tttt-tgttgtttttgttttcct-------------------tttc-tcttcctGAAAGCCAAGAGGGCGCATCCACagacagctgaaaaaaaa-----tatgagagaaTAAAggacaccccccccccccgtccTTGCGTCACATGTGTTTTGCCAA--------TTGAAAAGAGATGGATAATGGTGGTCCCA------------------GCTGATAGGCTATCAGTGATCA--
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0  1229638 382 -  4500979 TACAGACTGGATGCTCCCCATGCAAAATGGCTAGTCAACGGGCTCTGGAGCTACTGGTGTTGAACAATATGAATATCGGAACGATCGGAGATACTGACAAGTTTGCCACATTGGCTTCCCATGTTTCTGAGGTA---GGCAAACTCGTTCTTC--------TCTCTAATTCCT---TCTTGC--CATATGTCCATTAGAA-CCCTGTCATTA-GATTGAAAAATCGCtgtgttttcgttgtgttttct-ttttgtttttgttttcct-------------------ttccGTCTTTCAAAAAGCCAAGAGAGCGC------------CTGAGAAGAAG------ATGGGAGAATGAAGGGC-------------------GCGTCACATGTGTTTTGCCAATTCTTTGGTTGAAAAAAGATGGATGGTCTGGAT-----------------------GTGATAAGATATCAGTGATCACA
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold622     2255 406 +   386604 TTCAGACGGGGTGTTCACCATGCAAAATGGCTAGTCAACGTGCACTTGAACTTCTCGTTCTCAACAATATGAACATTGGCACTATtggagattctgaaaagttgGCTATGTTGGCATCGCATGTTTCTGAGGTA---GGAAAacttgttct----------tttctcttttctccatctttt--cacttttcctctAGAA-CCCTCTTATTA-GATTGAAAAATCACCAtgttttcgttatgttgtct-ttttgtttttgttttctctctctct-ttctctcatttttct-ccttaCAAAAAGCCAAGAGGGCGC-----CCCACAGCTGAG--AGAA-----GATGGGAGAAGGAAGACC-------------------TCGTCACATGTGTTTTGGCAATTCgtagattcaaaaaagatggatgatttgaaa-----------------------ttgataagaaatcaGTGATCAGT
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2517937 391 +  4147112 TTCAGACTGGGTGTTCCCCATGCAAAATGGCTAGCCAGCGCGCTCTGGAACTTCTTGTTCTCAACAATATGAACATTGGTACCATCGGTGATCCTGAAAAGTTGGCGACGTTGGCATCCCATGTTTCTGAGGTA---AGACAACTTGTTCTAC--------TTTCCcacttttcatctttct--cacATGTCCATTAGAA-CCCTGACATTA-GGTTGAAAAATTACTAtgttttcgttgtgttttct-ttttgtttttgttttccc--------------------ttt-tcttaCAAAAAGCCAAGAGGGCGC-----CCCACagctgagaaaaaa-----gatgggagAAGAAAGACC-------------------GCGTCACATGTGTTTTGCCAATTcttggattgaaaaaagatagatgGTCTGGAC-----------------------TTGATAAGATATCAGTGATCAGT
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084  203545 379 -   375229 tttagacGGGATGCTCTCCGTGCAAAATGGCCAGCCAGCGAGCTCTGGAACTTTTAGTGCTTAACAACATGAACATTGGTACTGTTGGCGATTCAGAGAAGTTGGCCACTTTGGCGTCGCATGTCTCAGAGGTACATAGAAAACTTGTTTT----------CTTCCTAATTCT---TCTTCC----------TAGTGAAA--------ATCA--------AAATCA--Gtatttttgttgtgttttc--ttttctctttcttttctt-ttttcttttctcccgtttcttt-tcCTGAGAAAA--CCAGAGGTCGT-----TCTT---CTTTGACAAGA----------------------C-------------------ACGTCACATGTGTTTTGCCG-----TGAATCCTGAAAAGATAAATGGTTTAGACAACAGAGAAGCATAAGAATGAGGAAGATAAGAAATCAGCGATCACT
i caeJap4.Scaffold17084 C 0 I 30

a score=9925.000000
s ce10.chrX             4266409 51 + 17718866 ACAAGAAAGTGCAGCTGTTTGCATACACAAATTGATTTATAGTTAAAAAAT
s cb4.chrX              9372846 23 + 21540570 -------------------TGCCTACACAATTTgatttat---------tc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1230020 34 -  4500979 CTA------TGCAGCTG--TGCATacactttttgatttat---------tc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     2661 34 +   386604 CTA------TGCAGCTG--TGCATACATCTCTTGatttat---------ct
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518328 34 +  4147112 ATA------TGCAGCTG--TGAATACACATTTtgatttat---------tc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  203924 30 -   375229 I

a score=167302.000000
s ce10.chrX             4266460 292 + 17718866 TTTTATTT-CAGGCGGATCTCGGATGGAATCAAATCTCAAAGTGGTCGGATATAGCTTGCATCTTGAAAAATTTGCCGCATCTCCGTGTGCTAAACATTGGTCATAACCCGCTGAATCCCGTGGTA-----GGTTGATGGTTTTTTTT---------GGTG--GTGCCCGAGAGTGTCAAATGACTTGAATCTTGAAAAA-GGAACCA-----------ATGTTGTTTCTCGTGACTTTTGGCAAAACTTGTGATAGAGCGACCGAATG--AATGGCAGTTTTGTTTGCAC----TTCCGAAGTGATAT----AATATTTTGAAAAGGAAA
s cb4.chrX              9372869 288 + 21540570 cttttttt-caggcgGATCTCGGTTGGAACCAAATTTCCCAGTGGTCCGATGTGGCTTGTATCTTGAAAAACTTGCCGCATCTTCGCGTCTTGAACATCGGTCATAACCCGTTAAATCCCGTGGTA-----TGTTAgtgttatttttttgaag----attg--gtAC------GTGTCAagtgaca---aaaaaagaaag-agaaccC-----------AGAATGTTTCATGTGACTTTTGGC-AAACTTGTGATA-------AGAATGCCATTGGT-GTTTTATTTGCACTACTTTGCGGAAAGATATATAGATTATCTTGAAAGGAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1230054 305 -  4500979 ttttttttgcaggCAGATCTCGGATGGAATCAAATCTCCCAGTGGTCCGATGTCGCTTgcatcttgaaaaatttgccaCATCTCCGCGTTTTGAACATCGGTCACAACCCTTTGAATCCCGTGGTA-----TGTTGGTG---TTTTTTCAAAGCAACGCTG--GTGCGTAA-AGTGTCAAATGACT---ATCTAAAAAAT-GGAACCAAGACGATAGGGAGAATGTTTCATGTGAC-TTTGGC-AAACTTGTGATAGAGCGGCGAGATGGCAGCGGT-GTTTTGTTTGCAC----TTGTGAAGTGatat----gatattttgaaaaggaga
i caeRem4.Crem_Contig0  C 0 I 101
s caeSp111.Scaffold622     2695 296 +   386604 attttttg-cAGGCAGATCTCGGTTGGAATCAAATCTCTCAGTGGTCCGACGTGGcatgtattttgaaaaacttgcCGCATCTCCGAGTCTTGAACATTGGCCATAACCCGTTGAACCCCGTggta-----tgtttttt---ctgttc---------ggTGCCGTGCCCAT--GTGTCAAGTGact---atcagaaaaat-agaaccAACAAGAAAGGGAGAGTGTTTCATGTGAC-TTGGGC-AAACTTGTGATAAAGTGGTGGAATGGCAGTGGT-GTTTTGTTTGCAC----TTGTGAAGTGATat----attaaattgaaaaaaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518362 293 +  4147112 gttttttg-caGGCAGATCTCGGATGGAATCAAATCTCTCAGTGGTCCGATGTGGCTTGCATCTTGGAAAATTTGCCGCATCTCCGCGTTTTGAACATCGGACATAACCCGCTAAACCCCGTGGTA-----tgttggtg---tttttt---------tttg--gtgccTAA--GCGTCAAATGACT---ATCTAAAAAATGGGAaccaagaagaaa--gagaatgtTTCATGTGACTTTTGGT-AAACTTGTGATAGAGCGGTGGAATGGCAGCGGT-GTTTTGTTTGCAC----TTGTGAAGTGATAT----AATATTATGAAGGGATA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  203954 209 -   375229 TTTTGCTC-TAGGCGGATCTCGGATGGAATCAAATCTCAAAGTGGTCCGATGTGGCGTGTATTCTGGAAAACTTGCCGCATCTTCGCGTCTTGAACATTGGACACAACCCGCTAAATCCCGTGGTACTCatttttcttg---tctttt---------tttc--gCACTTTT----------TGATT-------------------CCA-----------AG------TCAAGTGAC--------GTTCATGTCAT--------------------GT-G----------AC----TTATGATaggaaat--------------aaag----
i caeJap4.Scaffold17084 I 30 C 0

a score=-5857.000000
s ce10.chrX             4266752 35 + 17718866 AGAGAAACCAAATCAACAAAAAAACGGAGAAATTG
s cb4.chrX              9373157 13 + 21540570 ---------AGATTTA-------------TTGTTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622     2991 30 +   386604 -ctgag---aggCTGATATCAGAAATTG-TGGCTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518655 29 +  4147112 ---GAG---AGATTCAtatcaaaaatgactttttg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  204163 34 -   375229 aaagaaat-aaataaataaataagaagaGATGTGA
i caeJap4.Scaffold17084 C 0 I 31
e caeRem4.Crem_Contig0  1230359 101 -  4500979 I

a score=-12059.000000
s ce10.chrX             4266787 19 + 17718866 ACTTTT--------------------------GTATTGACTAGTG----------------------------------------------------
s cb4.chrX              9373170 22 + 21540570 ATATTG-----------------------ACGCAATTGGTCAAGT----------------------------------------------------
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold622     3021 57 +   386604 ACGTTT------------------------TGAAGTTTGTCAATAGAGTCAGATTGTTCTGAGAACTCTGATTATTG--TTTG--------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518684 84 +  4147112 acGTCTTTCCACAAGTAAATAAACTTTTTATGGAACTTTTTAGAAG-------------CGGGAAAAATGACTTTTGACTTTGGCACGGAACCTGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  204197 31 -   375229 I
e caeRem4.Crem_Contig0  1230359 101 -  4500979 I

a score=-8407.000000
s ce10.chrX             4266806 23 + 17718866 AGCTTTCATTTTCCGATGAAAA-----A
s cb4.chrX              9373198 17 + 21540570 -TATTTGGCAGT----TCTGA------G
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1230460 23 -  4500979 -agtttgatttt----tttaaacgaacA
i caeRem4.Crem_Contig0  I 101 C 0
s caeSp111.Scaffold622     3078 12 +   386604 -----TAACAA------TAAAA-----T
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518768 19 +  4147112 AAAGTTAACAAC----TTTAAA-----C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  204197 31 -   375229 I

a score=192608.000000
s ce10.chrX             4266829 260 + 17718866 GAAACATTTGTGCAAAAGGTCATATTTTGGAAAATTTCAAAA------------TTT---CAGATTGATCATGAATTGCCAGTCTCCACACTACACACCATTATTCTTAACGGTACCCATTTGCCATTCAAAACCCTCCAATCTTTCCTCTCAGTTCTACCAAAAGTCACCGAACTTCATATGTCTGACAACCAATTTAACGACGACGACGACTGCGACGAACCCATCAGCACCACCGTCCGAACTGTTCACCTCAACAGGTA----CTATTGATTTTT-----------
s cb4.chrX              9373215 271 + 21540570 AAAcca----ttccaaaaatca----ttccagattttccagatcaaagtttacttttttccagatcaatCATGAATTGCCGGTCTCTACCCTCCATACCATTATCCTTAACGGCACCCATCTTCCATTCAAAACCCTGCAATCTTTCCTCTCGATTCTTCCAAAAGTCACCGAACTTCACATGTCGGACAACCAATTCAACGATGACGATGACTGCGACGAACCCATCAGCACCACAGTTAAAACGATTCACTTGAACAGGTATtggttattgattttt-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1230483 268 -  4500979 AAAACA----TGTGAACACTTG----CTGGAGGCACGTAAAATGTAAGTGTTCTTTT---CAGATTGACCATGAACTGCCAGTTTCTACACTGCACACCATTATTCTTAACGGCACCCATCTCCCATTCAAAACCCTTCAATCTTTTCTCTCCGTTCTACCAAAAGTCAATGAACTCCACATGTCAGACAACAAATTTAAAGAAGATGATGACTGCGATGAACCCATCAGCACCACAGTCCGAACGATTCATTTAAACAGGTAAaacatattgattttt-----------
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold622     3090 253 +   386604 AGAACA----TATAAACGttta----tttgaga---agaaaaacaa--------ttt---cagatcGATCATGAACTGCCAGTTTCAACTCTGCACACCATTATTCTTAACGGCACCCATCTTCCATTCAAAACCCTCCaatcttttctctctgttcTCCCAAAAGTCACCGAACTTCACATGTCGGACAACCAATTTAACGACGATGACGACTGCGACAAATCCATCAGCACATCTGTTCGAACAATTCATCTCAACAGGTA----TTATTgattcct-----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2518787 253 +  4147112 AAAACA----TAAAAGAGTCCa----aattcga---ataaaataaC--------TTC---CAGATCGATCATGAACTTCCTGTTTCCAATATGCATACCATTATTCTTAACGGCACCAATCTCCCATTCAAAACACTTCAAACATTACTTGCTGTTCTTCCAAACGTCAGTGAACTTCATATGTCGGATAACCAATTCAACGACGACGACAACTGCCTCAGCCCCATCAGCACCTCTGTTCGAACGATTCACCTCAACAGGTA----TTATTGAtctct-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  204228 259 -   375229 GCAGTA----TTTGCACAATAC----TTTGATTTAT------------------TTC---CAGATCGATCACAAGCTGCCAGTCTCCACGCTGCACACCATTATACTAAATGGCACCCATCTTTCATTCAAAACTCTCCAATCTTTCCTATCGGTTTTACCAAAAGTCACGGAACTTCACATGTCGGATAATCAATTCAATGATGACGATGACCTCAATGAACCCATTAGCACCTCTGTCAGAACAATACATCTGAACAggtaat--ttattgattttttttgaagggtt
i caeJap4.Scaffold17084 I 31 C 0

a score=-12946.000000
s ce10.chrX             4267089 29 + 17718866 CACTATTGATCAAT-------GTTTCAGT-----ATGTTCA-----------------------------
s cb4.chrX              9373486 19 + 21540570 --------tggaat-------tttttg-------aagtttc-----------------------------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold622     3343 24 +   386604 ---ctctctttcat-------ttttca-------acatacG-----------------------------
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2519040 21 +  4147112 ---tccaacttttt-------tttt----------cattca-----------------------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  204487 67 -   375229 ---ttttgttgaatagtgcGATTTCTAGTAAgggaaatacaaaaaaaagaacgaaagaGCGAGAGATGGA
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1230751 18 -  4500979 I

a score=131217.000000
s ce10.chrX             4267118 476 + 17718866  
s cb4.chrX              9373506 507 + 21540570  
i cb4.chrX              I 1 I 2
s caeRem4.Crem_Contig0  1230769 501 -  4500979  
i caeRem4.Crem_Contig0  I 18 I 2
s caeSp111.Scaffold622     3371 512 +   386604  
i caeSp111.Scaffold622  I 4 I 78
s caePb3.Scfld02_0      2519065 521 +  4147112  
i caePb3.Scfld02_0      I 4 I 1
s caeJap4.Scaffold17084  204554 474 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-5943.000000
s ce10.chrX             4267594 15 + 17718866 GTTGTGAGGCTTT--GT
s cb4.chrX              9374015 13 + 21540570 CGGAAGGCACTTT----
i cb4.chrX              I 2 I 42
s caeRem4.Crem_Contig0  1231272 13 -  4500979 GGGTTGAGTCTTC----
i caeRem4.Crem_Contig0  I 2 I 1
s caePb3.Scfld02_0      2519587 15 +  4147112 AGTTTTAGTCTTGTT--
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  205028  6 -   375229 ----TGCAGC-------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622     3883 78 +   386604 I

a score=-1577.000000
s ce10.chrX             4267609 26 + 17718866 T----------GGGGGCAAACACCAGATATTTGAAT
s caeRem4.Crem_Contig0  1231286 21 -  4500979 -----------GAAGACGTACAT----TATTTGAAT
i caeRem4.Crem_Contig0  I 1 I 89
s caePb3.Scfld02_0      2519602 32 +  4147112 TCGGAGAAAGGAGGGACACGCAC----TATTTGAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205034 16 -   375229 -------AGTAAACGTTAAACAT-------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9374028 42 + 21540570 I
e caeSp111.Scaffold622     3883 78 +   386604 I

a score=-5068.000000
s ce10.chrX             4267635 95 + 17718866 TTGGAGGTTGCCGCAAAAGTATATTCCTTTTTTGTTGGAAGCTGTGCAGAGTTTGATATTACACTTCTGATCATTTGGAAAACATTTCGCAAAAA
s caePb3.Scfld02_0      2519634 49 +  4147112 GTGTCAGTCACGAGAGAAGT------------CGTTG--------------------------TTCCCTACAATTCGG--------CCGCCAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205050 25 -   375229 --------------AAAAGT------------AGTTA---------------------------------CAAGTCGG--------CGGGCT---
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9374028 42 + 21540570 I
e caeSp111.Scaffold622     3883 78 +   386604 I
e caeRem4.Crem_Contig0  1231307 89 -  4500979 I

a score=-4255.000000
s ce10.chrX             4267730 40 + 17718866 AATTATGTTTCTTAAAACTTGAGATTCTGATATCTTAAGC
s caeSp111.Scaffold622     3961 12 +   386604 --------------AA-----------TGATGTGttg---
i caeSp111.Scaffold622  I 78 C 0
s caePb3.Scfld02_0      2519683 17 +  4147112 ------------TGAA-----------TGATGTGTTGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205075 16 -   375229 -----------------------AATTTGA-ATCTCAGGC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9374028 42 + 21540570 I
e caeRem4.Crem_Contig0  1231307 89 -  4500979 I

a score=-22451.000000
s ce10.chrX             4267770 145 + 17718866 ----TTGAAGGTGGAACTTATCGAAAATACTTAAAATTCCCAAAAAAAAATAAATTGATATCAACAGATTTTTATGAGATGAAAAGGGAAAGTTATTACAAAATCACA-ATCAAAAATGTATTTTTACAAATTTTCTGCTTTTTTCACTT
s cb4.chrX              9374070  51 + 21540570 ----TTGGAAATGGG--------------------------ACAAAGAGGGGAATGGAGA---------------Agggagaaaatttgaattt---------tt---------------------------------------------
i cb4.chrX              I 42 C 0
s caeSp111.Scaffold622     3973  47 +   386604 -------------------------------------------aaaatgggaatttg--------------------------aatttgaatttgaaatcggattaca-aacaaaaa---------------------------------
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0      2519700  74 +  4147112 -----------------------------------------ATGAaatgggaatttg--------------------------aatttgaatttgaaattggattacatcacagaaaaacacttttcctatttttccactt---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205091  62 -   375229 GGTCATGCGGGCGGAGGTGatgtga----------------aaagaaaagaaaat----------------------------aattcaaaatg---------tgACCGGTCAaa-----------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1231307  89 -  4500979 I

a score=164.000000
s ce10.chrX             4267915 28 + 17718866 GTCCCTCGACTTTGGTCAAACTTTTTTT
s caeJap4.Scaffold17084  205153 11 -   375229 -----------------agacatttttt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2519774  0 +  4147112 C
e cb4.chrX              9374121  0 + 21540570 C
e caeSp111.Scaffold622     4020 10 +   386604 I
e caeRem4.Crem_Contig0  1231307 89 -  4500979 I

a score=-16035.000000
s ce10.chrX             4267943 101 + 17718866 ACTATATCCGTGTTCAATTTCTGAAAATTTCAAATTGTCGCCCACTCCTTTATGTACTAAATTAATGCTTTCAAGACACGTAATATA---------------ATTTTTAAGCCTAT
s cb4.chrX              9374121  80 + 21540570 ---------gtgtgtgattt---gaaattcaaaatt------caattcgtCAGATAGTA------------CACAGAAGGGGA-ACAAACAACTCTcaattcattgtt-----ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1231396  56 -  4500979 ------------cttgaatt---taaatttgaaatt------ggatt------ACACTA------------CAAAACACCAAA-Aca---------------gttctt-----tta
i caeRem4.Crem_Contig0  I 89 C 0
s caeJap4.Scaffold17084  205164  16 -   375229 -----------gtttgtttc---caGGTGC--------------------------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2519774   0 +  4147112 C
e caeSp111.Scaffold622     4020  10 +   386604 I

a score=-1660.000000
s ce10.chrX             4268044 1 + 17718866 -T
s cb4.chrX              9374201 1 + 21540570 -t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1231452 1 -  4500979 -t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4030 1 +   386604 -c
i caeSp111.Scaffold622  I 10 C 0
s caeJap4.Scaffold17084  205180 1 -   375229 G-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2519774 0 +  4147112 C

a score=159054.000000
s ce10.chrX             4268045 158 + 17718866 TTTTCCAGATGCGGGTTCCTGAAATGGTCGTCTGTTATGAATGTTGTCAAGCGATTCCCAAATGTGTGCTCAGTTTTTGTTTGCGAAAATCCTTTAAAAGATGTCACCCACTGCAAACATTTCGAACAACT-GCCGTTTTGGAATTTCCTGAATTTAGC
s cb4.chrX              9374202 158 + 21540570 cttttcagatgcGGCTTCCAGCGATGGTCGTCAGTTATGAATGTTGTCAAGCGATTTCCAAATGTGTGCTCAGTTTTTGTTTGCGAAAATCCTTTAAAAGATGTCACTCATTGCAAACAATTCGACCAACT-cccattttggaattttctcaaCCTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1231453 158 -  4500979 tttttcagatgcggATTCCAGGAATGGTCGTCTGTTATGAATGTTGTCAAGCGATTTCCAAATGTATGCTCAGTTTTTGTTTGCGAAAATCCTCTAAAAGATGTCACCCATTGCAAACAATTTGAGCAACT-cccattttggaattttctcaaCCTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4031 159 +   386604 tattccagATGCGGGTTCCTGAAATGGTCGTCTGTGATGAATGTTGTTAAGCGATTCCCAAATGTGTGCTCAGTTTTTGTTTGCGAAAATCCTCTAAAAGATGTCACCCATTGCAAACAATTCGACCAACTCccctttttggaatttcctGAATCTAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2519774 158 +  4147112 tttttcagatgcggGTTCCAAAAATGGTCGTCAGTGATGAATGTTGTGAAGCGATTCCCAAATGTGTGCTCAGTTTTTGTTTGCGAAAATCCTCTAAAAGATGTCATCCACTGCAAACAATTCGACCAACT-CCCTTATTGGAAGTTCCTGAATCTAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205181 145 -   375229 -------------GTTTCCAGAAATGGTCGTCGGTGATGAATGTGGTGCGACGATTCCCAAACGTCAACTCGGTGTTTATTTGCGAAAATCCTTTGGAAGATGTTACACACTGCAAACATTTTGATTCCCT-CTCATCCTGGAGCTCCCTGAATATGGC
i caeJap4.Scaffold17084 C 0 C 0

a score=-17181.000000
s ce10.chrX             4268203 126 + 17718866 CAAGGTACATTTACGGTGGTGATGGGTTTTTAAAGTAACTTT---TCAGTAACTTAACAAAGTAACTTAAAGAAACTTTTTTAAAGTTGGTATTTATTAGTTTTCAAAAATAAATTGCCGATTCCCAGA
s cb4.chrX              9374360  43 + 21540570 AAAGGTAAA-----------------------GCGCAAAAGCGGAATATTTGCTCAGC---------------------------------------CAgctttc------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1231611  38 -  4500979 AAAGGTAGA------------------------CGCAGACAC--ACCAGAGGTTTAG-----------------------------------------AGTTTTC------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4190  37 +   386604 AAAAGTAAA---------------------CACTGTACAATT---TTAATT-CTTTG-----------------------------------------ATTAT--------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2519932  40 +  4147112 AAAAGTAAA---------------------CATTGTAAAACT-GATTAATTACTTCG-----------------------------------------ATTTT--------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  205326   0 -   375229 C

a score=346058.000000
s ce10.chrX             4268329 584 + 17718866  
s cb4.chrX              9374403 579 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1231649 596 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4227 622 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2519972 612 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  205326 649 -   375229  
i caeJap4.Scaffold17084 C 0 I 35

a score=20500.000000
s ce10.chrX             4268913 24 + 17718866 TCTTATGATTTAATTAAGTTGAGT
s cb4.chrX              9374982 24 + 21540570 TCCCATGACTTAATTAGGTTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1232245 24 -  4500979 TCCCATGATTTAATTAGGTTGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4849 24 +   386604 TCCCATGATTTAATTAGGTTGAGT
i caeSp111.Scaffold622  C 0 I 39
s caePb3.Scfld02_0      2520584 24 +  4147112 TCCCATGATTTAATTAGGTTGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  205975 35 -   375229 I

a score=780.000000
s ce10.chrX             4268937 2 + 17718866 GC
s cb4.chrX              9375006 2 + 21540570 GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1232269 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2520608 2 +  4147112 GT
i caePb3.Scfld02_0      C 0 I 92
e caeJap4.Scaffold17084  205975 35 -   375229 I
e caeSp111.Scaffold622     4873 39 +   386604 I

a score=546.000000
s ce10.chrX             4268939 2 + 17718866 AT
s cb4.chrX              9375008 2 + 21540570 AT
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1232271 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2520610 92 +  4147112 I
e caeJap4.Scaffold17084  205975 35 -   375229 I
e caeSp111.Scaffold622     4873 39 +   386604 I

a score=-1101.000000
s ce10.chrX             4268941  5 + 17718866 -----------------------------CCTCA--
s caeRem4.Crem_Contig0  1232273 36 -  4500979 TGAGAAACGTAACgtgagaaatgaagaagccTTGAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2520610 92 +  4147112 I
e caeJap4.Scaffold17084  205975 35 -   375229 I
e cb4.chrX              9375010 40 + 21540570 I
e caeSp111.Scaffold622     4873 39 +   386604 I

a score=381.000000
s ce10.chrX             4268946 5 + 17718866 TCGGT
s caeRem4.Crem_Contig0  1232309 5 -  4500979 TCGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     4912 5 +   386604 TTGAC
i caeSp111.Scaffold622  I 39 C 0
e caePb3.Scfld02_0      2520610 92 +  4147112 I
e caeJap4.Scaffold17084  205975 35 -   375229 I
e cb4.chrX              9375010 40 + 21540570 I

a score=-1582.000000
s ce10.chrX             4268951  9 + 17718866 TCT-------CATTTT---
s caeRem4.Crem_Contig0  1232314  7 -  4500979 T---------TATATT---
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622     4917 16 +   386604 TCTCTTAGAATATATC---
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  206010  9 -   375229 ----------TATCTTCTT
i caeJap4.Scaffold17084 I 35 C 0
e caePb3.Scfld02_0      2520610 92 +  4147112 I
e cb4.chrX              9375010 40 + 21540570 I

a score=-889.000000
s ce10.chrX             4268960 5 + 17718866 CCTAC-
s cb4.chrX              9375050 4 + 21540570 -TTTT-
i cb4.chrX              I 40 I 1
s caeRem4.Crem_Contig0  1232323 4 -  4500979 -CTTT-
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold622     4933 5 +   386604 TCTTT-
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  206019 5 -   375229 -CGTTA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2520610 92 +  4147112 I

a score=194524.000000
s ce10.chrX             4268965 402 + 17718866  
s cb4.chrX              9375055 406 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1232328 412 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622     4938 412 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2520702 422 +  4147112  
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold17084  206024 441 -   375229  
i caeJap4.Scaffold17084 C 0 I 306

a score=-27600.000000
s ce10.chrX             4269367 188 + 17718866 G------GATACAAAGCCCT-ACCGACAAGA------------CAAAAGGCTTTTGTGG------------------------------TTCTTGGTGG----GCTGGAG-------GAAATCTGGTTTTTTTAAAAATAATTCT---TGGAATCAACACGATAG---------GAATG--------AGGATATTTTGTTAA---ATTTTGAA----------AAGCGAAAGGGTTGCGTAAAATAAATTAGTGAAATAACGACCCGTTTCTTACGCAAG-A
s cb4.chrX              9375461 242 + 21540570 GGAAAACAGACAAAAGCCAGTACCGCCTGACCGTGTATAAAGGCAAAATACATTAAGAGAAAAGACAATGAAACAAGAAACGCCATTTTTTCTTGGTAGGAAAACACAGG-------GAAACCGG------TTCAGAATTCGGCT---TGGTATCAGA-----Cggcgaccaaattttt--------------ttttgaaaaaataatttgaagaagtgaaaatgtgaaaa----tgcgcgaaatcatgcaatgaaatgaCAACCCGTTTGTTACGCAAGA-
i cb4.chrX              C 0 I 179
s caeRem4.Crem_Contig0  1232740 108 -  4500979 -------AGAACAAAGCTTG-ACCGCCTAGACATTTAGAA---cagaataaataaatag--------------------------------------------agACAAA-------GAAAC-------------aaagacattt---t-------------------------cattt--------------tcttggtAGAAGACATTAAACCTGT--------------------------TCATGCA-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     5350 205 +   386604 a------aacACAAAGCTCG-ATCGAC---ACGT---------CAAAATACATAGATAG---AGACAATAAGAGGAAAGAATATAAATTCCC-----------AATAAAATACATTCGAACC-------------GGTTTCCTCTCCATGGTATCATA---ATCG---------AATCgtaaaacaatgaaaatttcgaaaaattattttgga--------agaaaCGAAA----TGCGCGAAATTATTAA-----ATAACAACCCGTTTGTTACGCAAA--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2521124 188 +  4147112 G------AACACAAAGCTTG-ACCGCC----------------CGACATACATCAAGAC---GGACAAAGACAGAAGGAAATTCGATGTCGT-----------AAAAACG-------GAAAC-------------GGGTTTTTCTGC-TGGTATCATA---ATCg---------ttttt--------cgtaaattttgaaa----tttttggaataac-tgAAAAGCGAAA----TGCGCGAAATAATGAA-----ATAACAACCCGTTTGTTGCGTAAG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  206465 306 -   375229 I

a score=-2835.000000
s ce10.chrX             4269555 109 + 17718866 ---------------------CCACCGCTTATCTTTTTCGCGCATTTTCAAAATTCAATGAATTTTCAAGCAGGGATGAGAAGGGAATTCGGTATGAAAGAGAAGTTTATGAATATTAGAAAATAGAAAA
s caeRem4.Crem_Contig0  1232848  54 -  4500979 --------------------------------------------GCCTGGTATCGTAATG--------AGAAGAAATgg----------ct-----------gttttgaaaaa---ttgaaaacagacAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     5555 115 +   386604 AAGCTTATCTTCTTTGGTCAGCAGCTGACTATTTCTG--GCggatttcaatatttccatGCATTTTGTAACATGGATGA----------CCAGATGACGAAGGGTTCcaagaa---caagaaatgagaaa
i caeSp111.Scaffold622  C 0 I 55
s caePb3.Scfld02_0      2521312 109 +  4147112 CTGTTGA-------TGGTCAGCAGATGGGTATTTTTT-CCCGCATTTCAATATTCTCATGCATTTTGAAGCAGGGATGA----------CCTCATGGAAATAGATTCCAagaa---aagaatatgaagaa
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  206465 306 -   375229 I
e cb4.chrX              9375703 179 + 21540570 I

a score=-8578.000000
s ce10.chrX             4269664 173 + 17718866 AAAAATAAAATGCCTCTTAAATTTAAGGATGTCTTCAGAAAACCGAAAAATCGAAAAATGAAAAATTGAAAAAAAAACATTTTTACTG-TAAAAACACAAGGATACTAAATATAAATGTATCAATACTGTGTCGATTTTGTTTAAAAACTTTTTTTGAAATTTTTATGTTATTG
s caeRem4.Crem_Contig0  1232902  83 -  4500979 ------------------------------------CGAAACGCgggaaat-----aatgaaataataaaattacaACCCGTTTATTACGCAAAACG--------------------------------------------TTGCAATT------CGAGGCTTATCTATTACGG
i caeRem4.Crem_Contig0  C 0 I 16
s caePb3.Scfld02_0      2521423  47 +  4147112 -----------------------------------------agcaatgAAT-----ATTTAGGGATTGAGAGCTCTG------------GGAGAACA--------------------------------------------ttagaaac-------------------------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  206465 306 -   375229 I
e cb4.chrX              9375703 179 + 21540570 I
e caeSp111.Scaffold622     5670  55 +   386604 I

a score=0.000000
s ce10.chrX             4269837 14 + 17718866 CAAATTATTGCAAT
e caePb3.Scfld02_0      2521470  0 +  4147112 C
e caeJap4.Scaffold17084  206465 306 -   375229 I
e cb4.chrX              9375703 179 + 21540570 I
e caeSp111.Scaffold622     5670 55 +   386604 I
e caeRem4.Crem_Contig0  1232985 16 -  4500979 I

a score=-9905.000000
s ce10.chrX             4269851 209 + 17718866 TTTGGCGTATTGAAAATTCAAAAAAATTCAGCAGATATTTCTATGGCAATGCTGAATGAGGTGTAAATAATTCAATAAAAATAATATTTGTTCCTTGACAGACAAGTTGGAAAAAGCTGAAAGTCCAGCTAACTTTAGGCattttttacaaaatttttttaaagttattaagttttttttctaaatttctaagtttaaaaataaaacta
s caeRem4.Crem_Contig0  1233001 120 -  4500979 TTTCGCGCATTTTATGTGC--------CCAATACAtatt-----------------tgaaaagggaagatgTCATCAAGAATGA------TTCCAAGAAAGAAATGTTATGAA----TAAATGAACAGTTAATTTCTGCCGTTT------------------------------------------------------ATATCAAACTG
i caeRem4.Crem_Contig0  I 16 C 0
s caePb3.Scfld02_0      2521470  24 +  4147112 ---------------------------------------------------------------------------------------------------------------aa----tgaaaaaacaa----------------------------------------------------------------------agataaaaata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  206465 306 -   375229 I
e cb4.chrX              9375703 179 + 21540570 I
e caeSp111.Scaffold622     5670  55 +   386604 I

a score=-707.000000
s ce10.chrX             4270060 9 + 17718866 attttCGAA
s caeRem4.Crem_Contig0  1233121 8 -  4500979 GTAAtttt-
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2521494 9 +  4147112 gttttttta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  206771 9 -   375229 attttcaaa
i caeJap4.Scaffold17084 I 306 C 0
e cb4.chrX              9375703 179 + 21540570 I
e caeSp111.Scaffold622     5670 55 +   386604 I

a score=91.000000
s ce10.chrX             4270069 1 + 17718866 T
s caeJap4.Scaffold17084  206780 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2521503 0 +  4147112 C
e cb4.chrX              9375703 179 + 21540570 I
e caeSp111.Scaffold622     5670 55 +   386604 I
e caeRem4.Crem_Contig0  1233129 1 -  4500979 I

a score=53952.000000
s ce10.chrX             4270070 68 + 17718866 TTTCAGGAAAAAATAATTGTAACCAGAAGACGGCGTCCACCAAGTTCCACGTCAAGTTCTTCTTCGTA
s cb4.chrX              9375882 68 + 21540570 tttcaggagaAAATAGTGGTGACCAAGCGAAGAAGACCACCAAGCTCCACTTCAAGTTCGTCGTAAAA
i cb4.chrX              I 179 I 20
s caeRem4.Crem_Contig0  1233130 68 -  4500979 ttgcaggaaaaaATTGTGGTTACCAAACGAAGACGTCCTCCAAGCTCCACATCAAGCTCCTCATAGAC
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold622     5725 68 +   386604 TTGCAGGAGAAGATAGTTGTGACCAAGAGAAGACGTCCTCCAAGTTCCACGTCAAGCTCATCATCGtg
i caeSp111.Scaffold622  I 55 C 0
s caePb3.Scfld02_0      2521503 68 +  4147112 ttgcaggAGAAAATAGTGGttacaaaaagaagacgtccACCAAGTTCAACATCCAGCTCTTCATAGCA
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17084  206781 67 -   375229 -tacAGGAAAAAATTGTGGTTCCAAAAAGAAGACGCCCTCCCAGTTCTACCTCGAGTTCATCGTCTTA
i caeJap4.Scaffold17084 C 0 C 0

a score=-2227.000000
s ce10.chrX             4270138 6 + 17718866 ----ATTTTC
s cb4.chrX              9375970 2 + 21540570 ----AG----
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1233204 2 -  4500979 ----AG----
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622     5793 2 +   386604 ----at----
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  206848 6 -   375229 ATTGAC----
i caeJap4.Scaffold17084 C 0 I 36
e caePb3.Scfld02_0      2521571 19 +  4147112 I

a score=-3445.000000
s ce10.chrX             4270144 24 + 17718866 ATCATCCCTGGCAGGGATT-CCCTG
s cb4.chrX              9375972 17 + 21540570 ATCA----TCATTGGAACA----TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1233206 13 -  4500979 --------TCGAGTGAATG----TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     5795 24 +   386604 atcat-ttttgaatggatACATCTG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2521571 19 +  4147112 I
e caeJap4.Scaffold17084  206854 36 -   375229 I

a score=-199.000000
s ce10.chrX             4270168 7 + 17718866 CCACATG--
s cb4.chrX              9375989 7 + 21540570 TAGTATT--
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1233219 7 -  4500979 CAGTATT--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622     5819 7 +   386604 CAGTATT--
i caeSp111.Scaffold622  C 0 I 3
s caeJap4.Scaffold17084  206890 7 -   375229 --acataaa
i caeJap4.Scaffold17084 I 36 C 0
e caePb3.Scfld02_0      2521571 19 +  4147112 I

a score=46850.000000
s ce10.chrX             4270175 125 + 17718866 TATTGTATAAA----ATTCAAATTT-AGTTTCCTTGCCACAAACAACTC------TGCTATTCACGATTT---TTGTTTC--------GTTCAACTAGCCAATTTCATGT-----TCTATTCCGCCATGCTTTTTTTTGGTTGAATCACATC
s cb4.chrX              9376000 119 + 21540570 CATTGTGAATA----ATTAGAACCCAAGTAGACTTGCCGCTT----------------TTATTATGCTTT-TGTCCATTCTAAGCATTTCCCCACTAGTCAATTTCATGT-------TATTCCGCCA-----ATATTTGGTCGAATCATATC
i cb4.chrX              I 4 I 12
s caeRem4.Crem_Contig0  1233229 132 -  4500979 TGTTGTAAATA----ATTAGAAACT-AGTTTACTTGTCGCCTACATctctttgaaaactgattatgcttc---ttcttttttgttcctctTTCGCTAGTCAATTTCATGT-------TATTCCGCCA-----ATATTTGGTCGAATCATATC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622     5829 133 +   386604 TTCTGTACATA----TTTAGTAACT-AGTTCCCTTGCCCTcttcatctcaaaaacttttgaatacGCTtcaaattcgttttttgct--attttacTAGTCAATTTCATGT-------TATTCCGCCA-----ATATTTGGTCGAATCATATC
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2521590 130 +  4147112 GATTGTAAATA----ATTAGAAACT-AGTTTCCTTGCCGCCACCATCTCTAATG-TTTTGAGTATGCttt-ttttAGTTTACTGCC---CTCAACTAGTCAATTTCATGT-------TATTCCGCCA-----ATATTTGGTCGAATCATATC
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17084  206897 132 -   375229 tattATACAAATCATTTTAAGTTTT-AGTTCTCTTGCCCATCCCGTCTCt--------------cgctttttttctgttttcgttGACTCTTACTTAGTCAGATTCATATATTTACATACATAGCCA-----ATATTTGGCTGAATCATATC
i caeJap4.Scaffold17084 C 0 C 0

a score=4988.000000
s ce10.chrX             4270300 29 + 17718866 GATTACGT-AAAGTTTA-----AGACCA-TCCAGGT-
s caeRem4.Crem_Contig0  1233361 31 -  4500979 -TGTACGT-AAATTTCTGTTC-AAACCA-CCCAGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     5962 33 +   386604 -TTCACGT-AAACTTCTGTTCTGAACCACCCCAgg--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2521720 32 +  4147112 -TTCACGT-AAACTTCTGTTC-AAACCATCCCAGG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  207029 35 -   375229 TTGAACGTGAAACTTCTGCCCTGAAATT-TCCAGG-T
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9376119 12 + 21540570 I

a score=2730.000000
s ce10.chrX             4270329 2 + 17718866 TT
s cb4.chrX              9376131 2 + 21540570 tt
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0  1233392 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     5995 2 +   386604 tt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2521752 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  207064 2 -   375229 TT
i caeJap4.Scaffold17084 C 0 I 632

a score=20840.000000
s ce10.chrX             4270331 147 + 17718866 TCTCAATGAC-CCCCCC--------CCCCCCATCAGGTGAA---CTAGATGATTATCATCACAGTTCAATTCTTCTGCAGTTCCATTTTTT-------TGCATTTA-----ATAGTTTTTCTTTGTAGATAG----TTATT----TTTCCGGTTT---GGATTTTTT-GATATGCAATAAATA
s cb4.chrX              9376133 157 + 21540570 tttcaaaaac-caccCCCCAGGACCCGCCCAGTCAGGTGAAATCTTTT-TCAGAACCATCACAGTTCAA---------------CTTTTTCTTTAAAGTGCATTTATTTTCTTAGTTTTGAT------GTagcctcttttt---tcttccggtCTTGCACATTTCCTTGATACGCAATAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1233394 116 -  4500979 TCTCAATGAC-CCTCAC----------------CAGGTGAA---CTAT-TGAATACCATCACAGTTCCG---------------TCTATTT-------CGCATTTG-----TTAGTTTCGAC------GTAG----TTGAT---ACTTCCGGTAT------TCTTTCTGTCACGCAATAAata
i caeRem4.Crem_Contig0  C 0 I 97
s caeSp111.Scaffold622     5997 110 +   386604 tctcaatttcttcccAT----------------CAGGTGAA---CTTT-TCTTTACCATCACAGTTC-A---------------ATTGTAT-------TGCATTTA-----TTAGTTTTCGT------atag----ttttt------ctctgttt------ttta---aCCACGCAATAAATC
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2521754 116 +  4147112 TTTCAATGAC-CCTCAT----------------CAGGTGAA---CTTC-AAAATACCATcacagttc-----------------atttttc-------tgcatttA-----CTAGTTCtatt------gtag----ttttttgaagatccgGTCT------TCTATC-ATCACGCAATAAATA
i caePb3.Scfld02_0      C 0 I 134
e caeJap4.Scaffold17084  207066 632 -   375229 I

a score=0.000000
s ce10.chrX             4270478 1 + 17718866 T
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e cb4.chrX              9376290 0 + 21540570 C
e caeSp111.Scaffold622     6107 1 +   386604 I
e caeRem4.Crem_Contig0  1233510 97 -  4500979 I

a score=253.000000
s ce10.chrX             4270479 4 + 17718866 TCCA
s cb4.chrX              9376290 1 + 21540570 ---A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622     6108 4 +   386604 TTCA
i caeSp111.Scaffold622  I 1 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e caeRem4.Crem_Contig0  1233510 97 -  4500979 I

a score=441.000000
s ce10.chrX             4270483 7 + 17718866 TTGTACA
s cb4.chrX              9376291 7 + 21540570 TTGTAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e caeSp111.Scaffold622     6112 0 +   386604 C
e caeRem4.Crem_Contig0  1233510 97 -  4500979 I

a score=0.000000
s ce10.chrX             4270490 571 + 17718866  
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e cb4.chrX              9376298   0 + 21540570 C
e caeSp111.Scaffold622     6112   0 +   386604 C
e caeRem4.Crem_Contig0  1233510  97 -  4500979 I

a score=977.000000
s ce10.chrX             4271061 48 + 17718866 TGAA---GATGTT--TTTATGATGACACATGCTTCAGTTAAAAGATCTGGAAT
s caeSp111.Scaffold622     6112 53 +   386604 TGAACTATATGTTATTTTATAATACCAtgaagttcatttttcagatctcgAAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e cb4.chrX              9376298  0 + 21540570 C
e caeRem4.Crem_Contig0  1233510 97 -  4500979 I

a score=329.000000
s ce10.chrX             4271109 10 + 17718866 ATGATAGTTC
s caeRem4.Crem_Contig0  1233607 10 -  4500979 ATAATACTGA
i caeRem4.Crem_Contig0  I 97 C 0
s caeSp111.Scaffold622     6165  9 +   386604 -agatatttg
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeJap4.Scaffold17084  207066 632 -   375229 I
e cb4.chrX              9376298  0 + 21540570 C

a score=-2057.000000
s ce10.chrX             4271119 32 + 17718866 AAAAAAC-TTTTTTTGAGACATTTTTGAAATAT
s caeRem4.Crem_Contig0  1233617 33 -  4500979 AAACAACGGTTTCCCATCACGTTTTCCACACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     6174  7 +   386604 aagaaat--------------------------
i caeSp111.Scaffold622  C 0 I 6
s caeJap4.Scaffold17084  207698 32 -   375229 AAACATT-TCTTCTTGAAACAACTTAAATAAAT
i caeJap4.Scaffold17084 I 632 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e cb4.chrX              9376298  0 + 21540570 C

a score=-1504.000000
s ce10.chrX             4271151 6 + 17718866 --TAAAAC
s cb4.chrX              9376298 3 + 21540570 --TAA---
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1233650 6 -  4500979 --TGAAAA
i caeRem4.Crem_Contig0  C 0 I 12
s caeJap4.Scaffold17084  207730 7 -   375229 CAGGAAA-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2521870 134 +  4147112 I
e caeSp111.Scaffold622     6181 6 +   386604 I

a score=896244.000000
s ce10.chrX             4271157 1562 + 17718866  
s cb4.chrX              9376308 1529 + 21540570  
i cb4.chrX              I 7 I 34
s caeRem4.Crem_Contig0  1233668 1537 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold622     6187 1537 +   386604  
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2522004 1537 +  4147112  
i caePb3.Scfld02_0      I 134 C 0
s caeJap4.Scaffold17084  207737 1785 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-11997.000000
s ce10.chrX             4272719 47 + 17718866 ----GTTAAATAC-----ATTAAACAACGTTTTTAACTTAGA--AATGCTCAGAAACT-----------
s caeRem4.Crem_Contig0  1235205 35 -  4500979 -------aaaaac------tta--------ttatcTTTTGAG--ACAATGTGTAAACC-----------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622     7724 27 +   386604 -------------------TTA----------TTAGTTAGag--tatattcaaaaact-----------
i caeSp111.Scaffold622  C 0 I 9
s caePb3.Scfld02_0      2523541 29 +  4147112 -------------------TGA--------TTTTCGTTGCCA--ACTGTATCAAAAAT-----------
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17084  209522 61 -   375229 gaaaaaaaaatacaaaaaatca--------aataagtTTCAATCAATATGTATGAATTATGGAATATGT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9377837 34 + 21540570 I

a score=278048.000000
s ce10.chrX             4272766 637 + 17718866  
s cb4.chrX              9377871 616 + 21540570  
i cb4.chrX              I 34 I 18
s caeRem4.Crem_Contig0  1235241 612 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622     7760 536 +   386604  
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0      2523578 573 +  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17084  209583 674 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-17339.000000
s ce10.chrX             4273403 66 + 17718866 TGATAAAATGTTATTTAAGACGTTGC----------AATTTTATTATATGTAACAA-------AATTGAATTAGTTTTTAAAG
s caeRem4.Crem_Contig0  1235853 19 -  4500979 ------------------------------------------------TGGTGTCA-------TATTGTCTTAG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     8296 39 +   386604 ----------GCat----------------------gaattgatt---ttcaacGATAAGATGGGTCGCTTCAG---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524151 64 +  4147112 CAAGTGTGTGGCCTCCGAAAGATCGACAAGTGTCCAGACTTCATC---TGTAATGA-------GATCGAGTGAG---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  210257 21 -   375229 ----------------------------------------------TGTACATGGA-------AAGTTTTGAAG---------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9378487 18 + 21540570 I

a score=-13806.000000
s ce10.chrX             4273469 122 + 17718866 TTAATAGAAAAAAATTTGCTTAATTAACAATGGCAAAAAATGTTTAGAGTATTCAAAATTTCCAGTCAATTTTTTTTTTGAAAATTGTGAATTTTTTGAAAATATTAAACCATG--CTAAAAAC--------
s caeRem4.Crem_Contig0  1235872  36 -  4500979 ---------AAAAAC-------ATTACCAACAGCA--------------------------------------------------------------------CTCCAACCGTT----AACAAC--------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622     8335  43 +   386604 ---------ATAGAT-----------CCACTAGTG---------------------------------------------------------------------TCCAGACTTCGTCTGAGAATGAAATTAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524215  21 +  4147112 ---------CTA--------------------------------------------------------------------------------------------TTCAAACAta--cgaaaaat--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  210278   0 -   375229 C
e cb4.chrX              9378487  18 + 21540570 I

a score=0.000000
s ce10.chrX             4273591 1 + 17718866 T
e caePb3.Scfld02_0      2524236 0 +  4147112 C
e caeJap4.Scaffold17084  210278 0 -   375229 C
e cb4.chrX              9378487 18 + 21540570 I
e caeSp111.Scaffold622     8378 0 +   386604 C
e caeRem4.Crem_Contig0  1235908 1 -  4500979 I

a score=-3574.000000
s ce10.chrX             4273592 137 + 17718866 TTCCCCTACCTTGTTCATATATCATTAATTAAAAGTATTTTGTCCCATTTTTCCTTTTATCTTTTCGCAACTTCCGAACCAAGGTTTTTTCAATTTTCGTATATGTTAGGCAAAAAGTCGCACATAAATGTCAAAAA
s caeSp111.Scaffold622     8378  12 +   386604 -----------------------------------------------------------------------------AGCAAGGC------------------------------------------------AACA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2524236   0 +  4147112 C
e caeJap4.Scaffold17084  210278   0 -   375229 C
e cb4.chrX              9378487  18 + 21540570 I
e caeRem4.Crem_Contig0  1235908   1 -  4500979 I

a score=252.000000
s ce10.chrX             4273729 8 + 17718866 CAGAAAAA
s caeSp111.Scaffold622     8390 8 +   386604 CAGGAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524236 6 +  4147112 cagaag--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  210278 0 -   375229 C
e cb4.chrX              9378487 18 + 21540570 I
e caeRem4.Crem_Contig0  1235908 1 -  4500979 I

a score=-3603.000000
s ce10.chrX             4273737 17 + 17718866 TAATTTTAAGTTCAAAA-
s caeSp111.Scaffold622     8398  2 +   386604 T---------------A-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524242  1 +  4147112 ----------------a-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  210278 13 -   375229 -----TAAAGGTAAGTAA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9378487 18 + 21540570 I
e caeRem4.Crem_Contig0  1235908  1 -  4500979 I

a score=3278.000000
s ce10.chrX             4273754 7 + 17718866 CTGACCA
s cb4.chrX              9378505 7 + 21540570 CTTACCT
i cb4.chrX              I 18 C 0
s caeSp111.Scaffold622     8400 7 +   386604 CTAACCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524243 7 +  4147112 ctTACCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  210291 7 -   375229 TTCACCG
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1235908 1 -  4500979 I

a score=54455.000000
s ce10.chrX             4273761 68 + 17718866 ACTGCATTCCAACCGTTTACAGCGACTGCAGAACATCCAATTATTGAGCATGCAAGGTGAACAAATAT
s cb4.chrX              9378512 68 + 21540570 ACTGTACTCCATCCATTGACAGCTACAGCAGAGCAACCAATTATGGAGCATGccaaatgaacaaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1235909 44 -  4500979 ------------------------ACTGCGGAGCACCCAATTATAGAACACGCAAGATGAACAAAAAT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622     8407 68 +   386604 ACAGTACTCCATCCATTTACAGCTACTGCAGAACATCCAATTATTGAACACGCCAAATGAACGAAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524250 68 +  4147112 ACTGTACTCCATCCGTTGACTGCAACTGCGGAGCATCCAATAATAGAACATGCTAGATGAACGAAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  210298 68 -   375229 ATCGTGCTCCATCCGTTGACTGCAACCGCAGAACAGCCAATTATTGAGCATGCAAGATGCACAAAAAT
i caeJap4.Scaffold17084 C 0 I 1

a score=-573.000000
s ce10.chrX             4273829 1 + 17718866 C
s cb4.chrX              9378580 1 + 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1235953 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     8475 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2524318 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  210366 1 -   375229 I

a score=29108.000000
s ce10.chrX             4273830 77 + 17718866 GCTTGTCCGGTTGTTCCAGTTATTACGGCTACTCTACTTCCAGACGTTACCTAAAACAAT--------------CCACGTTATGAAAATGC-------
s cb4.chrX              9378581 43 + 21540570 gCTTGACCAGTAGTTCCAGTGATCACAGCAACTCGACTACTTG-------------------------------------------------------
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1235954 91 -  4500979 GCTTGACCAGTTGTTCCAGTTATGACTGCTACTCGACTATTAGATGTTACCtagaaataaaacaaagattagtttcaaaaaattgaaaaat-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     8476 76 +   386604 GCTTGACCAGTTGTCCCAGTGATAATAGCTACTCTACTTCCGGATGTGACctaaaaaagt---------------tgaataattaaaatat-------
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0      2524319 70 +  4147112 GCCTGACCAGTGTTACCAGTGATCACAGCAACTCTACTACTAGATGTTACCTGAAACATT---------------------ATTAAaacat-------
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17084  210367 86 -   375229 GCTTGTCCGGTAGTGCCAGTAATAACCGCTACTCTACTGTTTGATGTCAcctaaaaaaat------------atcgaaagcTCTAAAATTTGGCatgt
i caeJap4.Scaffold17084 I 1 C 0

a score=-2415.000000
s ce10.chrX             4273907 14 + 17718866 ------ATTGTCACCACTGG-
s caeRem4.Crem_Contig0  1236045 14 -  4500979 ------aatattattctTGT-
i caeRem4.Crem_Contig0  C 0 I 33
s caePb3.Scfld02_0      2524406 11 +  4147112 ---------attATAAATGT-
i caePb3.Scfld02_0      I 17 I 1
s caeJap4.Scaffold17084  210453 21 -   375229 gttttaaaaaatataaataca
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9378624  4 + 21540570 I
e caeSp111.Scaffold622     8552 18 +   386604 I

a score=456103.000000
s ce10.chrX             4273921 660 + 17718866  
s cb4.chrX              9378628 711 + 21540570  
i cb4.chrX              I 4 I 3
s caeRem4.Crem_Contig0  1236092 668 -  4500979  
i caeRem4.Crem_Contig0  I 33 I 24
s caeSp111.Scaffold622     8570 668 +   386604  
i caeSp111.Scaffold622  I 18 I 1
s caePb3.Scfld02_0      2524418 687 +  4147112  
i caePb3.Scfld02_0      I 1 I 37
s caeJap4.Scaffold17084  210474 725 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=160.000000
s ce10.chrX             4274581 3 + 17718866 TAG
s caeJap4.Scaffold17084  211199 3 -   375229 TGG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2525105 37 +  4147112 I
e cb4.chrX              9379339 3 + 21540570 I
e caeSp111.Scaffold622     9238 1 +   386604 I
e caeRem4.Crem_Contig0  1236760 24 -  4500979 I

a score=-2954.000000
s ce10.chrX             4274584 32 + 17718866 -TGTTTCTTTTTTTTTCAGGCACTAAATTATTC
s cb4.chrX              9379342 30 + 21540570 -TGTTATACTT--TGGAAATCACGAAATTTTTC
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold622     9239 26 +   386604 -TGTTAATCTC-----AACTCA-GAAATAGata
i caeSp111.Scaffold622  I 1 C 0
s caeJap4.Scaffold17084  211202 25 -   375229 TTGGAAATATT-----AAAtca-aacatttt--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2525105 37 +  4147112 I
e caeRem4.Crem_Contig0  1236760 24 -  4500979 I

a score=-6056.000000
s ce10.chrX             4274616 11 + 17718866 TAAATGTGTTA-----
s cb4.chrX              9379372  2 + 21540570 ---------TG-----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1236784  9 -  4500979 --CAGAtaatg-----
i caeRem4.Crem_Contig0  I 24 I 2
s caeSp111.Scaffold622     9265  7 +   386604 ----taaaatt-----
i caeSp111.Scaffold622  C 0 I 2
s caeJap4.Scaffold17084  211227 11 -   375229 -----gaattttagag
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2525105 37 +  4147112 I

a score=45601.000000
s ce10.chrX             4274627 131 + 17718866 TTACAGAGATAACGAATCATCGGACGGTTCAGTAATGTATCCAGAAAGTTTGGACAGTTTGAAATAAAA------TATTAA-----------TCTGCTCATTTATTATACACCCGTTTTT--------CAACAAATTATCATGC---------CTTCA-----GAAAAAA---
s cb4.chrX              9379375 134 + 21540570 TTTCAGCGAGAACGATTCATCAGATAATTCAGTGATGTACACAGAGAGTTTGGATAGTTTGAAATGATA-------------------------attttattatgatttttatctttttatttttttaaataaatctGCTATGT---------TTTGATTCTGGTAAA-----
i cb4.chrX              I 1 I 1125
s caeRem4.Crem_Contig0  1236795 119 -  4500979 tttcagtgaaaatgatTCATCGGACAATTCAGTAATGTACACGGAAAGTTTGGACAGTTTGAAGTAATA-------------------------TGCTCATTAAAAATTAACCCGttttttt------------CCTATCATAA---------TTGGA---CAATAAA-----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622     9274 112 +   386604 ttttagagaaaatgaCTCATCGGACAACTCAGTGATGTACACGGAAAGTATGGACAGTCTCAAGTAAAA-------------------------TGCTCAATTCGAATAAACCCGTTTTA-----------------atggttt---------tttaa-----ataaa-----
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2525142 118 +  4147112 TTTCAGAGAGAACGATTCATCGGAAAATTCAGTGATGTACACGGAAAGCTTGGACAGTTTGAAATAATA-------------------------TGCTCAAATTGGTTGAACCCGTATAACTT-----------AACATTATAC---------TTTCA-----ATAAA-----
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17084  211238 151 -   375229 TTTTAGAGAAAACGAATCGTCAAACGCTTCTGTAATGTACCCGGAAAGCTTGGACAGTTTGAAATGAAGATGTTTTATTAGTGAACGTTAGCTTTGCTCAAC---AACCAACCCGCCTGTAC------------ATTATCATGTAAATTTGTGTTTTG-----ATAAA--GAA
i caeJap4.Scaffold17084 C 0 I 16

a score=176655.000000
s ce10.chrX             4274758 194 + 17718866 TTATCACACATCTGATTCTTTCTGTATAAGGTACGGTACACAAATCGCCTGGTTCCTCAATGGAATCATTATTCGTTTTATTGCATTTCCATTCAACCGGACAAATCCTCGCTCGCCAAGCACTGGGCGATCATAGCTCTTGTTTTGTACAATATACCCGTCTTTTTCAGTAATGTCGTCTGGCAGAATCTGGA
s cb4.chrX              9380634 194 + 21540570 TTCTCATACATCTGATTCTTTCTGAATTAAGTAAGGAACACAAATAGCTTGATTTCGCGAAGGTATCATTATTCTTTTGATTGCGTTACCATTGAGCCTCACAAATCCACGTTCACCCAGCACAGGCCGATCGTAACTTTTGTTCTGTACAATGTAGCCATCTTTCTCCGTGATATCGTCTGGTAGAATCTAGA
i cb4.chrX              I 1125 C 0
s caeRem4.Crem_Contig0  1236914 194 -  4500979 TGATCatatttctgattctttcTGTATCAAATATGGGACACATATTGCTTGATTTCTGGATGGTATCATTATCCGTTTGATTGCATTCCCATTTAATCGGACAAATCCACGTTCTCCAAGAACGGGACGATCATAACTTTTGTTTTGCACAATATAACCATCTTTCTCGGTGATATCGTCtgggagaatctgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     9386 194 +   386604 tttctaTATTTCTGACTCTTTTTGTATCAAATACGGAACACATATAGCTTGGTTCCTAGATGGAATCATTATTCGTTTGATTGCATTTCCATTCAGTCTGACAAATCCACGTTCTCCGAGAACTGGGCGATCATAACTCTTATTTTGCACAATGTACCCATCTTTTTCAGTGATGTCATCAGGTAAAATCTAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2525260 194 +  4147112 GcttcaaatttctgattctttttgtATCAAATACGGAACACAAATAGCTTGATTCCGGGATGGAATCATTATCCGTTTGATCGCATTTCCATTCAGTCGGACAAATCCACGTTCACCAAGAACTGGACGGTCataacttttgttttgaacaatgTATCCATCTTTTTCTGTGATGTCATCTggtagaatctgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  211405 194 -   375229 TAACTATACATCTGATTCTTTTTGTATAAGATATGGGATACAAATTGCCTGATTTCTGGTTGGAATCATTATCCGTTTAATAGCGTTGCCGTTGAGTCGTACATAACCCTTTTCTCCTAGCACCGGGCGGTCGTAACTCTTGTTCTGCACAATCCACCCGTCGTTTTCAGTGATGTCATCGGGTAGAATCTAAA
i caeJap4.Scaffold17084 I 16 I 47

a score=-17176.000000
s ce10.chrX             4274952 38 + 17718866 T--------TTTTTGAATAATTGGTTAAAATAAATCATTACAA-TTG
s cb4.chrX              9380828 33 + 21540570 A---AACATATTTCAAG---------AATGGCACTAATAT--CTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1237108 39 -  4500979 a--ttccattttttgcgt------TTAAAAACAGGAATCTGAGTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     9580 37 +   386604 CGATAACGTCATTTTCA---------AGTTCTCATAGTTATAG-TTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2525454 38 +  4147112 aaaaaactaggattGAT---------AGAAAATGTAACTGTGGCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  211599 47 -   375229 I

a score=284408.000000
s ce10.chrX             4274990 432 + 17718866 TAACCTTAATGTTTGCTTCCTTCACAACTTTTGCCAAGTTTCCAGTTAACGGCTCGTAGAGCACATTTTTATGCTGATAGTTGAATTGCAGCAGATAGCTCATTCCCAACTCTCTTGCTTCTTTCGAACTGAGAACTGCGCCTCGTACTAAAACAAAAGAAATGTACatattaaatatttaataaaaaGTAT------------ACCTTGGACAAGTTTTCCACCAGCTGTTTTAATCACTTCAATTCCTGTATGTTTCAACAAATGCTCTCCAGCTTGGAGCCCGCTA-AAATTA---ATGAAAATAGTATAGAGAT------------TGGCATCACGAAAGAGAA---AAA---ACATACGTCATCACAGCTCCTTTTGCGTCTTCCATTTTTGTACCCAAGTAGTGAATTTTCCGAATATACTCAGTACCAGCAAGATCAATGCACATAGTTGCTCTGAAAA
s cb4.chrX              9380861 372 + 21540570 TCACCTTGATGTTTGCCTCCTTCACCACCTTTGCCAAATTTCCTGTCAATGGCTCATAGAGCACATTTTTGTGTTGATAGTTGAATTGCAGCAAATAGCTCATTCCCAGTTCTCGAGCTTCTTTGGAACTTAATACTGCTCCACG-----------------------------------------------------------AACTTGAACAAGTTTTCCGCCAGCAGTCTTTATAACCTCGATTCCAGTATGCTTGAGAAGATGTTCTCCGGCTTGAAGGCCACTGTAAA------ACCAAAT---TTTACGTGA------------TAACAGCA--------AA---AAA---GCTCACGTCATGACCGCTCCCTTAGCATCTTCCATCTTGGTACCAAGAtagtgaatttttcgaatatattCCGTACCAGCCAAGTCAATGCACATAGTcgctctgaaaa
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1237147 417 -  4500979 CCACTTTGATATTTGCTTCTTTGACGACTTTCGCCAAGTTCCCTGTCAATGGTTCATACAGAACATTTTTGTGTTGATAGTTGAATTGCAGCAAGTAACTCATACCCAGTTCTCGGGCTTCTTTAGAACTCAGTACAGCTCCACGCACTGAAacg----aaattccatttttcagtgtttaaGATTAAAGTTT-----------ACCTTGAACAAGTTTTCCTCCGGCTGTTTTGATAACTTCTATTCCAGTATGCTTGAGTAGGTGTTCTCCAGCTTGTAAACCACTG--AA------ATCTCAG---TTTAGCAGC------------CGacatca--------aatttttc---acttaCGTCATAACTGCGCCTTTTGcatcttccatttttgtacCTAGGTAATGGATCTTGCGAATGTATTCGGTACCTGCCAGGTCAATACACATAGTTGCTCTGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     9617 419 +   386604 AAACCTTGATGTTTGCTTCTTTGACCACTTTTGCCAAGTTTCCAGTTAGTGGTTCATACAGAACATTTTTGTGTTGATAATTGAACTGTAGCAAGTAACTCATTCCCAGTTCTCGAGCTTCTTTAGAACTCAAAACGGCACCGCGCACTAAAATA-------------TATGCATTGTCTAA----AAAACTTGCAAACCTCTAACCTTGTACAAGTTTGCCGCCGGCAGTTTTGATAACTTCGATTCCAGTATGTTTCAATAAATGCTCTCCGGCTTGTAAtccactg-aaa------attgaatgaatctCGAAGT------------TTACGTTG--------AA---AAAACTACTTACGTCATAACAGCTCCTTTTGCATCTTCCATCTTAGTTCCAAGGTAATGAATTTTACGGATGTATTCAGTACCCGCTAAGTCAATACACATTGTCGCTCTGAAAA
i caeSp111.Scaffold622  C 0 I 27
s caePb3.Scfld02_0      2525492 373 +  4147112 ATACCTTGATATTTGCTTCTTTGACCACTTTTGCCAGATTTCCAGTCAGTGGTTCATATAACACATTTTTGTGTTGGTAATTGAATTGGAGCAAGTAACTCATTCCTAGCTCTCTGGCTTCTTTAGAACTCAAAACGGCTCCACG-----------------------------------------------------------AACTTGGACTAGTTTACCACCAGCAGTTTTGATGACTTCTATTCCGGTGTGTTTCAACAAATGCTCTCCAGCTTGTAAGCCTCTG-AAACTAcacattcaat---tttctgagg----------------GTTA--------TA---AAA---ACATACGTCATCACAGCTCCTTTGGCGTCTTCCATCTTAGTTCCTAAGTAGTGGATTTTACGGATATATTCTGTACCAGCTAAGTCGATACACATAGTTGCTCTGGAAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  211646 425 -   375229 TCACCTTGATATTGGCTTCTTTTACAACTTTTGCCAGATTTCCGGTTAACGGCTCGTACAAAACATTCTTGTGTTGGTAATTAAATTGTAACAAATAGCTCATCCCGAGTTCTCGTGCTTCCTTTGAACTCAAAACTGCTCCACGCACTAAACcc---acaattttaattttgggtGAATCTTTATGATTTCT-----------ACCTTGAACAAGTTTTCCTCCTGCGGTTTTTATCACTTCGATTCCGGTGTGCTTCAACAAATGCTCGCCGGCTTGCAATCCTCTA----------AACAAACGGGCCTCTAAATAATCAGCATTTTTGGCATCA--------GA---------ACTCACGTCATGACAGCTCCCTTTGCATCTTCCATCTTGCCACCCAAATAGTGAATTTTTTGTATGTACTCTGTACCAGCCAGATCGATACACATTGTAGCCCTGAAAC
i caeJap4.Scaffold17084 I 47 C 0

a score=119.000000
s ce10.chrX             4275422 5 + 17718866 GTTTT
s caeJap4.Scaffold17084  212071 5 -   375229 AATTT
i caeJap4.Scaffold17084 C 0 I 34
e caePb3.Scfld02_0      2525865 1 +  4147112 I
e cb4.chrX              9381233 13 + 21540570 I
e caeSp111.Scaffold622    10036 27 +   386604 I
e caeRem4.Crem_Contig0  1237564 0 -  4500979 C

a score=-7692.000000
s ce10.chrX             4275427 136 + 17718866 CAAAACCTACATTAAATTTTCCATTTAAATAGTTTAAAGCAGCAGCTGAACTTGAAAATTGTCTTTATTCGTGTACAAAATGCGCGTAACTTTTTTTTACAGTTTTTTGTAGCTACTAGTATTCGGTCATTTTTGA
s caeRem4.Crem_Contig0  1237564  10 -  4500979 --------------------------------------------------------------CGTTATTCGT----------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2525866  34 +  4147112 Caagac--------aatttttgttttga--------------------------------gtttttatttttgg--------------------------------------------------------------
i caePb3.Scfld02_0      I 1 I 4
e caeJap4.Scaffold17084  212076  34 -   375229 I
e cb4.chrX              9381233  13 + 21540570 I
e caeSp111.Scaffold622    10036  27 +   386604 I

a score=-3305.000000
s ce10.chrX             4275563 263 + 17718866 AATTTAGTATATGAAAACTTAAATTTTAAGGGAGTTATATACATAGACGTTCTGGCGTTTTAATATATGCACATCAAATTAAGTTTTTAGCTTTTAATAATGGCTTGCAGGTGAACAACAAGTTCTTTTTTATAAACCTTTTTTGCTTTGAAATTATGCATTACAAGTCTAAAATGGATAAAATCACATAATTATTCAAAATTATGATATCAAATATATCTAGTAGTTCATCAACCATGCAAGCACAATTTTCTTGGAACTGC
s caeRem4.Crem_Contig0  1237574 108 -  4500979 -------TATGATGAAACTTAAATTAT----------CTTTCACAGA---------------------GCAAACAAAATTCACATTGTCACTGTTAC----------CAGGCACAAAACA---------------------TTCACT---AAGTTTGTCatta-----------------------------------------------------------------------------------aattttctataaacCAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2525900   4 +  4147112 I
e caeJap4.Scaffold17084  212076  34 -   375229 I
e cb4.chrX              9381233  13 + 21540570 I
e caeSp111.Scaffold622    10036  27 +   386604 I

a score=-820.000000
s ce10.chrX             4275826 1 + 17718866 G-
s caeRem4.Crem_Contig0  1237682 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2525904 1 +  4147112 g-
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17084  212076 34 -   375229 I
e cb4.chrX              9381233 13 + 21540570 I
e caeSp111.Scaffold622    10036 27 +   386604 I

a score=-3463.000000
s ce10.chrX             4275827 27 + 17718866 --------CCAAAACATTAAACTAT--TTTTTTGTTG
s cb4.chrX              9381246 27 + 21540570 CCCAGACTtcaatttatcgattttcga----------
i cb4.chrX              I 13 I 2
s caeRem4.Crem_Contig0  1237683 17 -  4500979 --------TCAAGATGGTAAAATGC------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2525905 14 +  4147112 --------tCAAAACACTAAAA---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  212076 34 -   375229 I
e caeSp111.Scaffold622    10036 27 +   386604 I

a score=1525.000000
s ce10.chrX             4275854 3 + 17718866 CAC
s cb4.chrX              9381275 3 + 21540570 aac
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1237700 3 -  4500979 AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    10063 3 +   386604 CAC
i caeSp111.Scaffold622  I 27 C 0
s caePb3.Scfld02_0      2525919 2 +  4147112 -AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  212076 34 -   375229 I

a score=122647.000000
s ce10.chrX             4275857 111 + 17718866 TTACAATGACAACCCAAAAATAATATAAGCCATTGTGAAGAACACATAAACCTGCTCGTTCGGCACAATGTCTCCAAACCCGACAGTTGCCATCGTGATAAAACAAAAGTA
s cb4.chrX              9381278 111 + 21540570 tcacaaaGATAGTCCAAAGATAATGTAGGCCATTGTAAAAAACACATAAACCTGCTCGTTCGGAACGATATCTCCGAAGCCGACAGTTGCCATTGTGATAAAACAGAAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1237703 111 -  4500979 TCACAATGATAATCCAAAAATGATGTATGCCATTGTGAAAAACACATAGACTTGTTCATTCGGCACAATATCTCCAAAGCCAACAGTTGCCATTgtgataaaacaaaaata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    10066 111 +   386604 TCACAAAgataatccaaaaataatgtATGCCATGGTGAAAAACACATAAACTTGCTCGTTGGGCACGATATCTCCAAAGCCAACAGTTGCCATCGttataaaacagaaata
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2525921 111 +  4147112 CCACAGAGATAATCCAAAGATAATGTAAGCCATTGTGAAAAACACATAAACCTGCTCGTTAGGAACAATGTCTCCAAAGCCAACAGTTGCCATTgtgataaaacaaaaata
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  212110 111 -   375229 TTACAAAGATAATCCAAAAATGATATAGGCCATAGTGAAGAAAACATAAACTTGTTCATTAGGAACAATATCTCCAAATCCTACAGTCGCCATTgtgataaaacaaaaata
i caeJap4.Scaffold17084 I 34 C 0

a score=187.000000
s ce10.chrX             4275968 1 + 17718866 G
s cb4.chrX              9381389 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1237814 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    10177 1 +   386604 a
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  212221 1 -   375229 g
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2526032 1 +  4147112 I

a score=40831.000000
s ce10.chrX             4275969 38 + 17718866 AATGCTTCGAAATACTCCAGGTGTTCCCAGGACTAAAA
s cb4.chrX              9381390 38 + 21540570 AACGCTTCGAAATACTCCAAGTGCTCCCAtgactcaaa
i cb4.chrX              C 0 I 1258
s caeRem4.Crem_Contig0  1237815 38 -  4500979 aatgctTCGAAATACTCCAAGTGCTCCCACGACTAtaa
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    10178 38 +   386604 aatgCTTCGAAGTACTCCAAATGTTCCCATGACTATAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2526033 38 +  4147112 aatgcttCGAAATACTCCAAGTGCTCCCAGGactataa
i caePb3.Scfld02_0      I 1 I 34
s caeJap4.Scaffold17084  212222 38 -   375229 aagGCTTCAAAATATTCAAGATGCTCCCATGACTGAAA
i caeJap4.Scaffold17084 C 0 C 0

a score=-2061.000000
s ce10.chrX             4276007 28 + 17718866 ---TTTTTATGATTATTTATCACTGGCAAAT-----
s caeRem4.Crem_Contig0  1237864 19 -  4500979 ---ttttcgaaaatatttgtCA--------------
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622    10216 22 +   386604 ---------ACACAATTTATCACTGGAGGTT-----
i caeSp111.Scaffold622  C 0 I 7
s caeJap4.Scaffold17084  212260 36 -   375229 ATTTattaaacattatttttttctaatattttaaAA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2526071 34 +  4147112 I
e cb4.chrX              9381428 1258 + 21540570 I

a score=-4974.000000
s ce10.chrX             4276035 5 + 17718866 ----AACTG
s caeRem4.Crem_Contig0  1237883 1 -  4500979 -----G---
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    10245 3 +   386604 ----AAC--
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2526105 5 +  4147112 ----aacta
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17084  212296 5 -   375229 AGTCA----
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9381428 1258 + 21540570 I

a score=273845.000000
s ce10.chrX             4276040 605 + 17718866  
s cb4.chrX              9382686 512 + 21540570  
i cb4.chrX              I 1258 C 0
s caeRem4.Crem_Contig0  1237888 614 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    10248 615 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2526110 623 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  212301 656 -   375229  
i caeJap4.Scaffold17084 C 0 I 93

a score=-20828.000000
s ce10.chrX             4276645 53 + 17718866 T--CATTCGAAAGAGAGTG--------------------CGTTGGTAGATCATTCCAATGCAAGTACAAAAAAGC
s cb4.chrX              9383198 42 + 21540570 t--cattCCGAACAATGAA--------------------CATT----CGACG---AGTTGCAGat----aatatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1238502 55 -  4500979 tgagattacGACTAATATAAAA-----ATC---------CATT----CAACATCCAAATGGGGATGC--AATATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    10863 52 +   386604 CGGTGATCAGAACGAACTAGAACATACAgtgaaaaaccatttt----cagcATTCC-------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2526733 52 +  4147112 tgaggc----attcatttggaacaaaaagt---------CTAC----CAGCATTCCAATGCAT-T----AACAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  212957 93 -   375229 I

a score=127761.000000
s ce10.chrX             4276698 220 + 17718866 ATTGTCAA-------------AAAAG---CCAAACCTTTCTTTTAAAACCACGATAGGACCTGTAGAGATAACTTAGAAACTCTGAGAGGAATTTTCCAATGTCTGCAATTGTAACAAGGAGAAGTGGGATGCCCAGCAGTGCAAAAATGATGCATGCTACTCTGCCAGTTACAGTGATTGGAACCAAGTTTCCATAACCTGAA---ATAAAACATAAATTTATTAAAATTGAAAATCA
s cb4.chrX              9383240 226 + 21540570 attttcaa----aatttcatgctACC---ACGAACCTTCCTTTTGAATCCCCGATATGATTTGTACAAATagctcagaaactcagaaaggAATTTTCCAATGTCTGCAATGGTGACAAGCAGCAGTGGGATcccaaaaagagcaaaaatgatgCAAGCCACTCTTCCAGATATAGTGATAGGTACCAAGTTTCCATATCCTGAAAACACTGACGATGTATgaattgaatttca------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1238557 227 -  4500979 TCATTCAATAACAGAAgcattcaaaa---actcacctttCGTTTGAATCCACGATAGGACTTGTAGAGATAGCTCAGAAATTCAGATAAGAATTTTCCGATGTCGGCAATAGTGACAAGGAGTAGAGGGATTCCaaacagtgcaaaaatgaTACATGCGACACGACCAGTTACAGTAATCGGCACTAAGTTTCCATATcctaaa---acaaaacataaGGAAGTTGGAGatta------
i caeRem4.Crem_Contig0  C 0 I 46
s caeSp111.Scaffold622    10915 228 +   386604 GGTTTCAAATTTGAGTTCTTGAAAATATCACTCACCTTTCTTTTGAAACCGCGGTAGGATTTGTATAGATAgcttaaaaattcagatagAAACTTTCCGATATCCGCAATCGTTACaaggagaagaggaatcccaaataaagcaaaaatgaTGCATGCTACACGTCCAGTGACCGTAATCGGTACTAAATTTCCATatcctgaa---aataaatgtttttccttcctcctt--------
i caeSp111.Scaffold622  C 0 I 26
s caePb3.Scfld02_0      2526785 224 +  4147112 AATCTCGGTGGTAAATAAACGAAAAG---ACTAACCTTCCTTTTGAAACCACGATAAGATTTGTAGAGATAAGatagaaattctgaaaggaaCTTTCCAATGTCGGCGATAGTAACAAGTAGGAGTGGGATTCCGAACAGAGCAAAGATAATGCAGGCAACTCGACCGGTAACAGTTATTGGCACTAAGTTTCCATATCctgtt---aa-aaatatttttgtataAACAAT--------
i caePb3.Scfld02_0      C 0 I 156
s caeJap4.Scaffold17084  213050 202 -   375229 gttttcaa----------------aa---actcaccTTTCGTTTGAAAGCTTGGTAAAATTTATAAAGGTAGCATAAAAATTCCGACAGAAATTTTCCAATATCCGCGATCGTCACAAGCAGTAAAGGGATTCCGAAAAGTGCGAAAACAATACATGCAACTCTTCCAGCTACCGTAATAGGCACCAGGTTTCCAtatcctgaa---at------ttttgaacttaaaaa---------
i caeJap4.Scaffold17084 I 93 C 0

a score=0.000000
s ce10.chrX             4276918 49 + 17718866 ACTCTCTTCGGATTTCGTGAGTTTAAAATTTGATTCACGACCACTTTGT
e caePb3.Scfld02_0      2527009 156 +  4147112 I
e caeJap4.Scaffold17084  213252  0 -   375229 C
e cb4.chrX              9383466  6 + 21540570 I
e caeSp111.Scaffold622    11143 26 +   386604 I
e caeRem4.Crem_Contig0  1238784 46 -  4500979 I

a score=-3313.000000
s ce10.chrX             4276967 37 + 17718866 ATAATTACGATTAAAAAAAAAATTTTAAGCCTCACAA
s cb4.chrX              9383472 17 + 21540570 ------------aacaaaaaagttttgag--------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold622    11169 28 +   386604 ATCATTTTG--CTCCGAAAAAATTGTGCA-------A
i caeSp111.Scaffold622  I 26 C 0
s caeJap4.Scaffold17084  213252 33 -   375229 ataataa----tacaaATAAAACATCAGGCCCGCGGA
i caeJap4.Scaffold17084 C 0 I 91
e caePb3.Scfld02_0      2527009 156 +  4147112 I
e caeRem4.Crem_Contig0  1238784 46 -  4500979 I

a score=-471.000000
s ce10.chrX             4277004 36 + 17718866 TCAGGTTTAAAAGTAAGTTTTAACGGGACACTGACA
s caeSp111.Scaffold622    11197 19 +   386604 CCGGAAAGAAAAGCAC-----------------ACA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2527009 156 +  4147112 I
e caeJap4.Scaffold17084  213285 91 -   375229 I
e cb4.chrX              9383489  0 + 21540570 C
e caeRem4.Crem_Contig0  1238784 46 -  4500979 I

a score=-7983.000000
s ce10.chrX             4277040 61 + 17718866 AAAATTAAAATCTGTGGAAATATTTGTATTTTTAAGTTTCAATAAAAGCTAAACTAATAGA
s cb4.chrX              9383489 28 + 21540570 -aaagtctgattttcg----ttttcatgACATC----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1238830 28 -  4500979 AAAATTAAGG----CG----TAGTCGAACTACTAGA-------------------------
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold622    11216 28 +   386604 AGGCGTTTTGCCTGTG----AATTTTAGTTTT-----------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2527009 156 +  4147112 I
e caeJap4.Scaffold17084  213285 91 -   375229 I

a score=-2337.000000
s ce10.chrX             4277101 38 + 17718866 GCTATAACT-CAATAACTTCAAAACCAATCTCCAATTCA
s cb4.chrX              9383517 29 + 21540570 ------ACTATCA----TGCACAAACTGTTTCCGGGTTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    11244 17 +   386604 ------ACC-CCG----TCTACAAATAG-----------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2527009 156 +  4147112 I
e caeJap4.Scaffold17084  213285 91 -   375229 I
e caeRem4.Crem_Contig0  1238858  0 -  4500979 C

a score=-824.000000
s ce10.chrX             4277139 10 + 17718866 ATCAAATTTT
s cb4.chrX              9383546  4 + 21540570 AGCA------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2527165  9 +  4147112 atcattttt-
i caePb3.Scfld02_0      I 156 C 0
e caeJap4.Scaffold17084  213285 91 -   375229 I
e caeSp111.Scaffold622    11261  0 +   386604 C
e caeRem4.Crem_Contig0  1238858  0 -  4500979 C

a score=-3952.000000
s ce10.chrX             4277149 36 + 17718866 AACATTTAAAAGTCTGTTTGGATTATTCATACAAAT
s cb4.chrX              9383550 14 + 21540570 ----------------------ACCTTTACAGACAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    11261 14 +   386604 ----------------------Actttcataaaaat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2527174 14 +  4147112 ----------------------tttctcttaaaaaa
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17084  213376 23 -   375229 AAAATGTGAAAGCCCTT-----ACTTTT--------
i caeJap4.Scaffold17084 I 91 C 0
e caeRem4.Crem_Contig0  1238858  0 -  4500979 C

a score=-402.000000
s ce10.chrX             4277185 27 + 17718866 TTCGTAAAATAACAGAATAAAACATGG
s caePb3.Scfld02_0      2527197 21 +  4147112 ------AAATGCAAGCATAAAAGGCGT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17084  213399 12 -   375229 -------------AGTATAAGAGAT--
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9383564  0 + 21540570 C
e caeSp111.Scaffold622    11275  0 +   386604 C
e caeRem4.Crem_Contig0  1238858  0 -  4500979 C

a score=-27584.000000
s ce10.chrX             4277212 115 + 17718866 TGCAATGATA-----ATTATGACATCACTATGTCTGAAACATGTTTCAGCTATCGTGCAACTTGAAAAGGGCGTTTTTTCGCACTACCAT-----------CGTCCTTT----TCTATAATTGTTGCATCACTGC
s cb4.chrX              9383564  49 + 21540570 --------------------------GGCGTTGCCAAGAAA------------------------------------------------------------TGACCTTTACTCATAATGATGATATCACCACTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1238858 106 -  4500979 -----TGAC------ATCATGTCTACGATTTTACCGGAAAAGGTT----------------TTTAAAAAGGCGTTTCCTTGCACGTATATATCGAGTTCTCTGACCTTT--TCATTGTTTCGATGGCATCATTGT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2527218  55 +  4147112 TGTTTCAAT------ACTGAATTTT-GGAGCCGCCAAgacaaata--------------------------------------------------------taattttt----------cttgcgGCA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  213411  79 -   375229 -ATTATGAAATTCTTGTTCTTTTTGCGATCTGACAGACATACATA------------TGTATTTCACAATGCGTCAGCTTGTTG-----------------TGTGTTTC--------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    11275   0 +   386604 C

a score=176076.000000
s ce10.chrX             4277327 345 + 17718866 AAAACCACAAGAAA------ACATTTAAACATTATTATCATT-TTTTTTCTCCACCTCGACTAAAAACCACACGGTTTCCGGAACGATTTTTGACTTGTACTACAATTTTTTGTTTC-AAAGTATTATATTTTGAAACTTACCAATTGTCGTAATAACCGTGGCGGCGAAAAACATCGAATTCGGAAATGTCCAGAGAACCTCGTCTTCTCTTGTTTTATTCAACAAATGTTTTGCGGTGATAAACTGATTTCGATAAGCTTGGAACATGTTTTTCACTAGTTGCTCGAAATATTCCTGATTTATCGCGTTAAATGCTTCCCGAGAAATTCGATTGTCAGAATCCTAAAAA-TT--------------------
s cb4.chrX              9383613 301 + 21540570 CAAACCGCaaaaaaaGACTCCCACCCA----------------GTTTATTTCCCATT--------ATTGACacacttttccaa------------------------tttttatttg-ta---cTTGTCTTCAAAAACATACCAATTGTggtgattactgtagccgcaAAAAACATTGAGTTTGGAAACGTCCATAAAACCTCATCTTCTCGTGTCTTGTTGAGCAGATGCTTGGCAGTGATAAATTGATTACGGTAAGCTTGGAACATGTTTTTGACCAATTGCTCGAAGTATTCTTGGTTGATCGCATTGAATGCTTCACGAGATATCCGATTATCAGAGTCCTGAAAC-TT--------------------
i cb4.chrX              C 0 I 780
s caeRem4.Crem_Contig0  1238965 307 -  4500979 AAAACCGCAGAAA-------CCACCcataattttttatcattctttttttttcggtc--------aacAATAAAATCACCACA------------------------TGTTTAATTT-TG---CTCATGTCC---GACTCACCGATAGTAGTAATTACAGTAGCCgcgaaaaacattgaatttggAAATGTCCACAGTACTTCATCCTCTCTTGTTTTATTTAGTAAGTGTTTTGCAGTAATGAACTGATTCCTATAAgcttgaaacatatttttgacaagttgCTCGAAGTATTCTTGATTGATAGCGTTGAATGCTTCTCTGGATATCCGATTGTCAGAATcctaaatg-tt--------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    11275 302 +   386604 gaaaccgCAACAAA------ACACCCA-----CGgtatcatc-atttttttcttgtt--------gacCACAGAATCATAAGA------------------------CTTCCGTTTC-AC---ATTAACTG-AAAAACGCACCAATCGTtgtgattactgtagccgcaaaaaacattgaatttgGAAAGGTCCATAGCACTTCGTCTTCTCTTGTCTTGTTCAGTAGATGTTTTGCAGTGATGAACTGGTTTCGGTAGGCttgaaacatgtttttcaCAAGTTGCTCGAAATATTCTTGGTTAATCGCGTTGAATGCTTCTCTTGATATCCGATTGTCCGAGTCCTGCAGT-----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2527273 299 +  4147112 AAAACCGCAGCATA------ACACTT--------gtatcata-a-ttttttcctgtt--------gtcAGTGAAATCATAAGA------------------------CTTCCGTTTCGAA---ATCAACT--AAATACTCACCGATTGTtgtgattactgtagctgcAAAGAACATCGAGTTTGGGAAGGTCCACAGAACTTCATCCTCTCTGGTTTTGTTCAATAGATGTTTAGCAGTGATGAACTGATTTCGGTAAGCTTGAAACATATTCTTGACTAATTGCTCGAAATATTCTTGATTAATTGCGTTGAAAGCTTCTCGCGATATTCGATTGTCTGAatcctgaaatg----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  213490 302 -   375229 AAAGTC--------------TCACtt-----------tcctc-gatttttttttgac------------atgacgtcatt---------------------------tttttttctt-aa---ttcgcACTC--GAACTCGCCTATAGTGGTGATTACGGTGGCGGCAAAAAACATGGAATTTGGAAAAGTCCATAAAACTTCGTCCTCTTTTGTTTCGTTCAAAAGATGCTTTGAAGTGATGAACTGATTTCGATAGGCggaaaacatatttttcacCAATTGCTCAAAATATTCCTGATTAATCGCATTAAAGGCTTCTCTTGAAATTCGATTATCCACATCCTAAATT-TAACAATCAGAgattaaaaatt
i caeJap4.Scaffold17084 C 0 C 0

a score=-5082.000000
s ce10.chrX             4277672 18 + 17718866 TCCCAAATTTACTCTCGT-
s caeRem4.Crem_Contig0  1239272 16 -  4500979 --ttaaatttaattcaTA-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    11577 14 +   386604 ----ATCTTTgatcaaac-
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2527572 15 +  4147112 ---aaaatttggtgaaaa-
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17084  213792 12 -   375229 -------tccaataGATGt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9383914 780 + 21540570 I

a score=69788.000000
s ce10.chrX             4277690 98 + 17718866 TTTTTGAAGTAAACTAGCCTGAGTAATATTCCATATATGATCTTGAAACTCATCACGAAGACCAAGGATTGTAGTGAGTTCGTGATTTCTTGTCTGAA---
s cb4.chrX              9384694 94 + 21540570 tttttg----aagcatACCTGTGTGATGTTCCAAATATGATCTTGAAACTCATCTCGTAAGCCTAGTATTGTTGTTAATTCGTGATTCCTTGtctgaa---
i cb4.chrX              I 780 C 0
s caeRem4.Crem_Contig0  1239291 97 -  4500979 TTTATGTTGCAATTATACCTGTGTGATATTCCATATATGATCCTGAAATTCATCACGTAGGCCAAGTATTGTTGTAAGCTCATGATTCCGagtctga----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    11599 94 +   386604 tgagaa----aaggtTACCTGAGTAATATTCCATATATGATCCTGAAATTCGTCTCGAAGCCCCAGTATTGTTGTCAGTTCATGATTTCTtgtctgaa---
i caeSp111.Scaffold622  I 8 I 42
s caePb3.Scfld02_0      2527598 98 +  4147112 TGGGTGGATCAGTGTTACCTGTGTGATGTTCCAAATGTGATCTTGAAATTCATCTCGTAAACCTAGTATTGTCGTCAATTCGTGGTTTCTAGtctgaa---
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17084  213804 91 -   375229 ----------ttttttACCTGTGTAATATTCCAAATATGATCTTGAAATTCATCTCGTAATCCAAGTATAGTTGTGATTTCATAATTTCTTGTCTAcataa
i caeJap4.Scaffold17084 C 0 C 0

a score=546.000000
s ce10.chrX             4277788 1 + 17718866 A
s cb4.chrX              9384788 1 + 21540570 a
i cb4.chrX              C 0 I 142
s caePb3.Scfld02_0      2527696 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  213895 1 -   375229 a
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    11693 42 +   386604 I
e caeRem4.Crem_Contig0  1239388 0 -  4500979 C

a score=-534.000000
s ce10.chrX             4277789 2 + 17718866 -AC
s caeRem4.Crem_Contig0  1239388 2 -  4500979 -ac
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2527697 2 +  4147112 -ac
i caePb3.Scfld02_0      C 0 I 190
s caeJap4.Scaffold17084  213896 2 -   375229 aa-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9384789 142 + 21540570 I
e caeSp111.Scaffold622    11693 42 +   386604 I

a score=1001.000000
s ce10.chrX             4277791 12 + 17718866 ----TT---CATTTTTGTT
s caeRem4.Crem_Contig0  1239390 12 -  4500979 ----tt---ttttttggtt
i caeRem4.Crem_Contig0  C 0 I 18
s caeJap4.Scaffold17084  213898 19 -   375229 tcaattaaatatttttgtt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2527699 190 +  4147112 I
e cb4.chrX              9384789 142 + 21540570 I
e caeSp111.Scaffold622    11693 42 +   386604 I

a score=165.000000
s ce10.chrX             4277803 30 + 17718866 TTTCAATTTCAGTGCAATCCAAAAATCATG
s caeJap4.Scaffold17084  213917 26 -   375229 ttcc--cttaattacga--aaaaaaacatg
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2527699 190 +  4147112 I
e cb4.chrX              9384789 142 + 21540570 I
e caeSp111.Scaffold622    11693 42 +   386604 I
e caeRem4.Crem_Contig0  1239402 18 -  4500979 I

a score=0.000000
s ce10.chrX             4277833 544 + 17718866  
e caePb3.Scfld02_0      2527699 190 +  4147112 I
e caeJap4.Scaffold17084  213943   0 -   375229 C
e cb4.chrX              9384789 142 + 21540570 I
e caeSp111.Scaffold622    11693  42 +   386604 I
e caeRem4.Crem_Contig0  1239402  18 -  4500979 I

a score=91.000000
s ce10.chrX             4278377 1 + 17718866 T
s caeRem4.Crem_Contig0  1239420 1 -  4500979 T
i caeRem4.Crem_Contig0  I 18 C 0
e caePb3.Scfld02_0      2527699 190 +  4147112 I
e caeJap4.Scaffold17084  213943 0 -   375229 C
e cb4.chrX              9384789 142 + 21540570 I
e caeSp111.Scaffold622    11693 42 +   386604 I

a score=3025.000000
s ce10.chrX             4278378 4 + 17718866 CTCA
s cb4.chrX              9384931 4 + 21540570 CTCA
i cb4.chrX              I 142 C 0
s caeRem4.Crem_Contig0  1239421 4 -  4500979 CTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    11735 4 +   386604 CTTA
i caeSp111.Scaffold622  I 42 C 0
s caePb3.Scfld02_0      2527889 4 +  4147112 CTCA
i caePb3.Scfld02_0      I 190 C 0
e caeJap4.Scaffold17084  213943 0 -   375229 C

a score=96680.000000
s ce10.chrX             4278382 109 + 17718866 CCTCAAGTTCCTTCGGAGCCTCCAGATATCGAAATAAAAATGCGCCGGCAATGAGATATAGGAACAGCAAAATAACCAGTCCAACGTGAGGTAGGATACGTTTTGCATA
s cb4.chrX              9384935 109 + 21540570 CCTCTAGTTCTTTTGGCGCTTCTAAATACCTGAACAAAAATGCTCCGGCGATCAGATAGAGAAataataatatcaccaatcCCACATGAGGTAGAATCCGTTTGGCGTa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1239425 109 -  4500979 CCTCAAGTTCTTTAGGTGCTTCTAAGTATCTGAAGAGAAATGCACCAGCAATCAAATACAAGAATAGAAGAATCACTAGACCAACGTGAGGTAGAATCCGTTTTGCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    11739 109 +   386604 CCTCAAGCTCTTTCGGAGCTTCTAAATATCGAAAAAGGAATGCTCCTGCTATAAGGTACAAAAATAGTAATATCACCAGTCCAACGTGAGGGAGGATACGTTTTGCATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2527893 109 +  4147112 CCTCCAGTTCTTTCGGAGCTTCCAGATATCGAAACAGAAATGCTCCAGCTATCAAATACAGAAAAAGTAGTATTACTAGTCCAACATGAGGTAGTATTCGTTTTGCAta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  213943 109 -   375229 cctCAAGTTCCTTGGGAGCTTCCAAGtatcgaaatagaaatgcaccAGCAATTAAGTAAAGAAATAACAAAATAACGAGACCAACATGTGGTAATATTCGTTTTGCAta
i caeJap4.Scaffold17084 C 0 C 0

a score=422.000000
s ce10.chrX             4278491 11 + 17718866 CTAAAATTTGA
s cb4.chrX              9385044 11 + 21540570 ctaaatttgga
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1239534 11 -  4500979 CTGAAACGGAt
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2528002 11 +  4147112 ctgaaatttgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  214052  8 -   375229 ctaaataa---
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    11848  0 +   386604 C

a score=1638.000000
s ce10.chrX             4278502 3 + 17718866 AAA
s caeRem4.Crem_Contig0  1239549 3 -  4500979 aaa
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      2528013 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17084  214060 3 -   375229 aaa
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9385055 19 + 21540570 I
e caeSp111.Scaffold622    11848 0 +   386604 C

a score=366.000000
s ce10.chrX             4278505 4 + 17718866 TATT
s caeRem4.Crem_Contig0  1239552 4 -  4500979 tatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  214063 1 -   375229 ---t
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2528016 8 +  4147112 I
e cb4.chrX              9385055 19 + 21540570 I
e caeSp111.Scaffold622    11848 0 +   386604 C

a score=698.000000
s ce10.chrX             4278509 21 + 17718866 TAAAAGTAAGGTTTTCAATTA
s caeJap4.Scaffold17084  214064 21 -   375229 taaatattaattatttaatta
i caeJap4.Scaffold17084 C 0 I 23
e caePb3.Scfld02_0      2528016  8 +  4147112 I
e cb4.chrX              9385055 19 + 21540570 I
e caeSp111.Scaffold622    11848  0 +   386604 C
e caeRem4.Crem_Contig0  1239556  0 -  4500979 C

a score=0.000000
s ce10.chrX             4278530 399 + 17718866 CTTTAAAATGGAGTTTTTGCAGATTTTCGTGGTGAAATAAGTATTAATATATACATATATATTTTGTAAAATTGAACAAACAACACCATTTTATAAATTTGCAAACGtttaattaatttaattttaattaCCTGTTTAGTTTACTCTCATCGTTATACTGTTGTGTTTCTTCTATGCACTTTTTTTGCACTTCTATTAAGGTTTCTATCAAAGTTTTTTTTTTTTTTAATTTCTAGGTTTCTAGGCACGTAACTCGTGAATTTTCATACGCAGTGTCAAGTCGCTGCGACGTGAATATGGTATCAAAAACATATCTGCAGTTCTAATTAATCCTGAAGTTTTATGAATCTTGCACTAAGTACCAATTTAGAAAAACATCGTATTTTTAACTTTTATATT
e caePb3.Scfld02_0      2528016   8 +  4147112 I
e caeJap4.Scaffold17084  214085  23 -   375229 I
e cb4.chrX              9385055  19 + 21540570 I
e caeSp111.Scaffold622    11848   0 +   386604 C
e caeRem4.Crem_Contig0  1239556   0 -  4500979 C

a score=264.000000
s ce10.chrX             4278929 11 + 17718866 CTCTAAGTTCA
s caeSp111.Scaffold622    11848 11 +   386604 CTTTAtgtaaa
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2528016  8 +  4147112 I
e caeJap4.Scaffold17084  214085 23 -   375229 I
e cb4.chrX              9385055 19 + 21540570 I
e caeRem4.Crem_Contig0  1239556  0 -  4500979 C

a score=225.000000
s ce10.chrX             4278940 5 + 17718866 TCAGA
s caeSp111.Scaffold622    11859 4 +   386604 -tagt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528024 5 +  4147112 tcaaa
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084  214085 23 -   375229 I
e cb4.chrX              9385055 19 + 21540570 I
e caeRem4.Crem_Contig0  1239556 0 -  4500979 C

a score=3276.000000
s ce10.chrX             4278945 6 + 17718866 TTTTTT
s caeRem4.Crem_Contig0  1239556 6 -  4500979 tttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    11863 6 +   386604 tttttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528029 6 +  4147112 tttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214085 23 -   375229 I
e cb4.chrX              9385055 19 + 21540570 I

a score=-5334.000000
s ce10.chrX             4278951 21 + 17718866 TAAT--TCTTAAAAATATGAA----CA
s cb4.chrX              9385074 17 + 21540570 TAAT--GCTTGAAAAGT--------AT
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0  1239562 15 -  4500979 tgattcacttgaaaa------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    11869 23 +   386604 --at--ttcagaaaataaaaaagaaca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528035  9 +  4147112 --at--ctttg--------------cA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214085 23 -   375229 I

a score=123738.000000
s ce10.chrX             4278972 134 + 17718866 CCTACCACAAATAACTTTTTCTCTTTAGTCTCCACTTCTGTTTCATCATCTGAAATAGGGGGTCCAGCAGATGTCAAGTCCATTTCCATCGGAATCTCATTAAGTGATGACAGTGAGCTGTCTGCCGAGCCCTG
s cb4.chrX              9385091 131 + 21540570 TTTACCacgaaaaactttttctccTTGGTCTCCACTTCGGTTTCATCATCTGAAATTGGCGGTCCGGCCGTCGTCAAATCCATTTCCATTGGTATCTCATTGAGAGATGATAGTGAGCTCTCG---GAGCCCTG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1239577 134 -  4500979 cttacaacaaagaattttttctcCTTAGTTTCCACTTCAGTTTCATCGTCAGAGATAGGCGGTCCTGCAGTAGTCAAATCCATTTCCATCGGGATTTCATTGAGTGATGATATAGAACTGTCGGCAGAGCCCtg
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    11892 134 +   386604 attaccacaaagaactttttctctttagtTTCAACTTCAGTTTCATCGTCTGAAATCGGCGGCCCAGCTGATGTCAGATCCATTTCCATCGGAATTTCATTGAGAGATGATAGTGAGCTATCCGCAGAGCCCtt
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2528044 134 +  4147112 ATTACCACGaagaactttttctctttggtTTCCACTTCAGtttcatcatctgaaattggTGGTCCAGCTGTTGTAAGATCCATTTCCATCGGAATTTCATTGAGGGATGAGAGCGAACTCTCCGCGGAGccctg
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17084  214108 134 -   375229 CTTACCGCGACAAACTTTTTCTCTTTCACTTCATTTTCTGTTTCATCGTCTGATATGGGTGGGCCTTCCCTTGTCAAATCCATTTCCATCGGAATCTCATTGAGCGAAGAAACGGAACTCTCCGCGGAGCCCtg
i caeJap4.Scaffold17084 I 23 I 3

a score=-12555.000000
s ce10.chrX             4279106 34 + 17718866 TGAGTTGAAAATTGAGGGGTACTAAACGTTTTGT----
s cb4.chrX              9385224 28 + 21540570 CTCTTTTCGATTGGGATGAAAACATGAA----------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1239713 32 -  4500979 tttatcaaaataatgAGTAAAGTAAGTACTCT------
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    12029 27 +   386604 tcaattttatttcatcaaACAGTGTTT-----------
i caeSp111.Scaffold622  I 3 C 0
s caeJap4.Scaffold17084  214245 33 -   375229 taaatcgaaaactgGT---CATTATCCATTTT--CAGC
i caeJap4.Scaffold17084 I 3 C 0
e caePb3.Scfld02_0      2528178 42 +  4147112 I

a score=29364.000000
s ce10.chrX             4279140  68 + 17718866 -ATGCCAAGTTACCATATCGAATGTGTCCACAGCATTGTGAGTGTACA---------------------------------TTTTTGTACTGCTAATTCAAT-
s cb4.chrX              9385252 101 + 21540570 -ATGATAAATTACCATGTCAAACGTATCGACCGCATTGTGAGTGTACATGAGCAGCTATTtgatagagaaaaaatgtatattttttgtgGTACAAATCCAAT-
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1239745  68 -  4500979 -ATGAAAAGTTACCATGTCAAAAGTGTCGACCGCATTATGAGTGTACA---------------------------------TTTATATAATATCAGTTTGAT-
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold622    12056  61 +   386604 --ATCGGGATTACCATGTCAAACGTGTCGACCGCATTATGAGTGTACA---------------------------------TTT------GAGTAGTTTAAC-
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0      2528220  66 +  4147112 -AATCCCAATTACCATGTCAAAAGTGTCAACCGCATTATGAGTGTACA---------------------------------TTC--GTTAGAGTAGTCTGAT-
i caePb3.Scfld02_0      I 42 I 17
s caeJap4.Scaffold17084  214278  68 -   375229 TAGCCACCATTACCATGTCAAAGGCGTCCGATGCATTATGTGTGTACA---------------------------------TTT--GTGAGCACTGCCGGAAT
i caeJap4.Scaffold17084 C 0 C 0

a score=2304.000000
s ce10.chrX             4279208 20 + 17718866 --TGATCCAGCAGAAGAAGCCA
s caeRem4.Crem_Contig0  1239830 20 -  4500979 --AAATCCAGCAGTCGAGCTCT
i caeRem4.Crem_Contig0  I 17 I 9
s caeSp111.Scaffold622    12135 20 +   386604 --AAATCCAGCAGTCAGACACT
i caeSp111.Scaffold622  I 18 I 8
s caePb3.Scfld02_0      2528303 20 +  4147112 --AAATCCAGCAGTCAGTCACT
i caePb3.Scfld02_0      I 17 I 8
s caeJap4.Scaffold17084  214346 20 -   375229 TTAAAAACTGGAAAAGATCA--
i caeJap4.Scaffold17084 C 0 I 14
e cb4.chrX              9385353 20 + 21540570 I

a score=106705.000000
s ce10.chrX             4279228 201 + 17718866 CTTTTGCTCGGGATACACCAGAAAGTGGAGAATTG------GGAGAGAGAGAGGAATAATGAACAACTGGTGGGTCCACAAGAAAATCACTACATTGTGAATTGGGATGAGCAGCC-----GAGACGATGAGTGTTACAC---ATATCG--------CTGAAATGACGGAACATGACG----TTTTTTGACACGT-----TTTTGTA-AAATTTTGATATCTCGGAAAAAAAT--------
s cb4.chrX              9385373 221 + 21540570 TTTGCTCTCAAGACACAACAACtgggagaagaaggaaaaacgaGGGAGGAGGAAAATAATGAACAACTGGTGGGTCCG-AAGAAAAT-----CATTGTGAATTGGGATGTGAAGTGCTTTTCTGATGACGCGTATTACACAAACT-TGGGACAGACACGCTAATGACGGAAcatgacgttttttttttgacacgt-----tgttaagaaaatttcgatttattAGATGAAAAT--------
i cb4.chrX              I 20 I 83
s caeRem4.Crem_Contig0  1239859 186 -  4500979 ttttttctcgagaCACTCCAGCAAGTGGA------------GGGGAGGGGGGAGAATAATGAACAACTGGTGGGTCTG-AAGAAAATCACTACATTGTGAATT-GGATGAGGAGAG-----CCGACGACGCGTATTACAC---TT-TGG--------CTGTAATGATGGAACATGACG----TTTTTTGACACGT-----TATTGAG-AAATGTTGATATATT---Taaa-----------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622    12163 190 +   386604 ctttttctcaaga-----cAGCAAGTGGAAGCAAAA-----AGGGGGGAGACGGAATAATGAACAACTGGTGGGTCCG-AAGAAAATCACTACATTGTGAATTGGGATGAGATGTG-----CTGACGACGCGTATTACAC---AG-CTG--------CTGTAATGACGGAACATGACG----TTTTTTGacacgt-----tttcaaa-aatttgtgaTATA-----TGGAAGT--------
i caeSp111.Scaffold622  I 8 I 4
s caePb3.Scfld02_0      2528331 186 +  4147112 CTTTTCCTCGAGA-----CAGCAAGTGGAAGGAAA----------GGGGGAGGGAATAATGAACAACTGGTGGGTCCG-AAGAAAATCACTACATTGTGAATT-GGATGAGAAGTGC----CCGACGACGCGTATTACAC---AT-TGG--------CTGTAATGACGGAACATGACG----TTTTTTGACACGT-----TGTTGAG-AAATATTGATATAT----TGAAAAT--------
i caePb3.Scfld02_0      I 8 I 4
s caeJap4.Scaffold17084  214380 188 -   375229 TTTTCTCTCAACACCAGCCAGTCCGTGGA-----------------------GCAATAATGAACAACTGGTGGGTCCG-GAGAAAATCACTACATAGCTATTT-GGATGCGAA--------ATGGGCCTGCGTGTTACAC---AT-CCG--------ATGCAATGACGGAACATGACG----TTTTTTGACACATCTCAGTTTTAAA-AG---TTGATCCAACCGaggaaaacaataaaat
i caeJap4.Scaffold17084 I 14 C 0

a score=-20942.000000
s ce10.chrX             4279429 94 + 17718866 GAGTTAG--ACATAATGATGACCAATTTCGGAAACTGGGGTGTAACCAATGACATCAACGG-----------TGAAATTTTAAACGAATTTATATGACAAATAAAGG
s caeRem4.Crem_Contig0  1240045 64 -  4500979 --attagtttaaaaaagCAGAGTAAC---------TTATGTGAAATA----------GCTT-----------AAGAA---CAAAAGTGAGCAGCAAGTA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    12357 75 +   386604 aaagtcatttttcggTGATGATAATTA--------TCATGAGTAACA-CCGGTATCTTCTT-----------CATAA----AAGGGCGGTGACCTGACA--------
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2528521 72 +  4147112 AAGTCGATTACAAAATGGTGATGAATT--------TTATGAGTAAAAGTTCGTATCTACT--------------GAA----AAGGGC-GTTATCTGATA--------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  214568 91 -   375229 gagatagatgcgaaaaaacgtgaaaaacacgaaa-tgaagggtaacaaaaaataacgacTGGTGGTTTAACCTGGAA----TATGACGAATGCAGG-----------
i caeJap4.Scaffold17084 C 0 I 1184
e cb4.chrX              9385594 83 + 21540570 I

a score=-1147.000000
s ce10.chrX             4279523 14 + 17718866 TTAAAAGAAAGATA--------
s caeRem4.Crem_Contig0  1240109  4 -  4500979 TTTA------------------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    12432 22 +   386604 TTCAAAGAAACGTTTTTCGATG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528593 22 +  4147112 TTCGGAGAAACGATTTTCGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214659 1184 -   375229 I
e cb4.chrX              9385594 83 + 21540570 I

a score=-26744.000000
s ce10.chrX             4279537 101 + 17718866 AAA-----------------TAAAGGTTATGTA---CCC-------------------GAAT---------------ACGAATAATTTCAA------TGTTGGTCTAGAC---AACAGTAACACATCTGTCTGTCTAAGTTGCAAGATAAC--AAAAT-TTGCGGTT
s cb4.chrX              9385677  80 + 21540570 AGA-----------------CCAGAGTCAAGTA---TTC-------------------GAAT------------AAAATGTACGATATAAATGTGTCTTCATGTCTAGAC----------------------------------TGATAAG--AACATCTTGCGGTT
i cb4.chrX              I 83 C 0
s caeRem4.Crem_Contig0  1240118 136 -  4500979 AAAGTTGCAGCGTACCATTTCTAGATACTAGta---gtttt-tgtttcctttACCATGaaac------------aaaatgcaaaataCAGA-----------GTCTAGACAGGAAAATCGAAGGGTTTGTGGAATTTTGT--TAAGATAAC--AAAATCTTGCGGTT
i caeRem4.Crem_Contig0  I 5 I 183
s caeSp111.Scaffold622    12454  93 +   386604 ---------------------ACGATATAATTA---TTCCTGCCTTTTCACC------GCATTATTCACGTTTGTCAGTGAACAGATTACAAAACCTTGTCTGTA-AGTC--------------------------------TAGACTGAG--AAAGT---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528615 102 +  4147112 ---------------------ACGAGTTGATTACTTTCCTTGCACttctatttttgagttat---tcaCGTTTGACAGAGAACAAAAGACAAAATACTGTTGGTCTAGAC--------------------------------TAGGGTGAGAAAAAGT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214659 1184 -   375229 I

a score=-26938.000000
s ce10.chrX             4279638 160 + 17718866 ----AGCATTGTCCACTTCCAGTACAT------------TTTTGCATTATTCCCTGCTGCTGAAATTTAGGCTTGACTATTAACTTTACTGTAAAGGTCTCATGCACT-ATAACCTATTTTATCAGCACATCTGCAAGTTTCGAAACGATTAGACATTT---CCGTCTA-GACATCTGT-------------TC---------------------
s cb4.chrX              9385757 157 + 21540570 TCGACTCATT-GTGATTTATAAAcgatttatatttttccttcaaatttttcaaattcttctcaaaatttggatttggtTTCTTAATTATTAATCAATTGAGAAGgagc----------------aactgataaaaaagtgTTGGACAGACT----AATC---ACGTCTGAGGAATTATT-------------TA---------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    12547 166 +   386604 ----GGCATTCTCCATTTGCATAAGAT------------AACAG-----------------CATTCTGCGGTTTTGCACTTATCGCCACCTACCACCTACAACGtact--------atatttttcatttgcatcgaaaaattcaagaaagg----ATCTATGGTGACTG-TGAGTTTTTATCAGTTGTTCTCTGTTCCTACCAATTC---TATTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2528717 164 +  4147112 ----GGCATT-TGCATTTTAGAAAGAT------------AACAGAGCCTTGTGGTTTTGCCTGTCATGGCGTTTTAAACACATTTGTATTGTTGAGTGAAATAGTACTCCTAGCCAACACTGAAGATCTATATGGAATGTTTC-------------TCT---TTatcag-taagttttt-------------tgtt----acaaTTCAGGGGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214659 1184 -   375229 I
e caeRem4.Crem_Contig0  1240254 183 -  4500979 I

a score=-45600.000000
s ce10.chrX             4279798 367 + 17718866 TTCTGTAAAA------------AGTTCTTGTATT-GATTGTT--TTTTTCATTTTTCCAAATTGTCGAAAGTGTATCTATAAA-----TCGCTCTCTCTT---------ATCGC-----------ATATATAGTTGATCATTCATTCATTCAAATTAGGAAT-TTTTCTACGCGTGT--TATTACGCTATTTTTGCGACACTCTTGTTTCG--------TCAAAACTTG-------CTCCGAACCCAAAACAGCATCCATAGCGTGATAAT-AC------GTATTTGCATTGTTA-TTATCGAACCACACCACCCAAC-AATATTTCGCCATTATC-ATTTTAACAATTAGTAATTGTGC-TCCGGATATGCTATTCTTGTATTTTATTTTTC----------TTCATACTGATAATTGAAACAATCAT----CACATCACTTTT--GATGA
s cb4.chrX              9385914 325 + 21540570 TCGTGTaaaa--------------------------------aaaGGCCGACTTCG--------------------------------CTAGATTTTCTA---------TTcac----------cacaattttttgatgctAC-----TACCATT---GAGT-CGTTATCTACATgacaaaataaaaacatttattgTCGTTTTCGTACCATCTTCTGTGTAAcgccttcctttttttcccatcGCGAAACATCTACAAC----GTATGAC-CA------TTGTTTTCGTTATCA-ATTGCCAACACCACAAACAG---TGCATTCCACTTTTATCTACTAT---TATTAGTAATTGCGGTTTTGAAGGA-----TCTTGTGTTTCATAACTGT-------GTTCTTGAAAGATGACTAGATAATGAAA----AACGTCATCTAGAcgata-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1240437 326 -  4500979 ttctggaatatt------ctaaattt------tt-tcatgttgatggtcattttt-------------------------------------attttttt---------tttgcag-aggTGTGTAAAATATATTGATGGTACGT-TGTTTCGTT---GAACACTTTGTATGCATTAC-AGATAATTTTATCTtgcattattttcatttca---------taaaGCA---------TTGCAAAGGCGAAACA------------ATACGACACG------TTTGTTTTGTTATCATTTTGCCAGCACCATcaaca-------attccatttttatcgGTTA----------TAATTGTGG-TCAGGAGAT-----TCTcttatttcataatttttgtttcgttttctgaaagataAATGTGTGACTAAATCGTAACGTCATCTATg-atta-
i caeRem4.Crem_Contig0  I 183 C 0
s caeSp111.Scaffold622    12713 378 +   386604 -TCTATAGAACTGAGGAATTATATTGTTAGCATT-CTTTGTTGATTTCTGACCTTGGGAGGTTCGagaaagaatttttagagagT---TATTCTTATCTGGAACAATTATTTACTGTATTCATGAGTTAATCATGAGTGACA--CATGTTTCAAT---GAAC-TTTTCT----------AATCGATATTATCTCGCAT-ATCTCGACATCA-----ACAACAGAACA-----------ATAATCgagaagaatc----------gaagaat-GGACacgtttgtttttcttatca-ttg-cCAACCACATGAGCCACCATctattcgatttttatc-gTTA------TTAGTAATTGCGGTTACAGAaaa--ttcttttccatttcataaTTCT------GGTTTCTTCTAGataaatgcaaaaaaaat----aacgTCACCT----GATGA
i caeSp111.Scaffold622  C 0 I 48
s caePb3.Scfld02_0      2528881 345 +  4147112 -CCGTGAACGCTAAGGAATTATAATT---GCACTGATCAGttgatttccgattttcgatAATTCTGGAAAGAATTTACTGGAATTCTGTTGTCTTATCTG---------TTTACAGTACATGCAAACCAATAATGAGTGACACGCGTGTTTCATT---GAAC-TATTTC----------TGTCAAAATTAGCT-------------TATTG-----GCAATAATATACACC-----TCCTGATCGAGAAAAATC----------TCACAAT-GG------TTGTTTTCGTTATCA-ATGACAAACCGCATGAGCCGCTAAACATTCGATTTTTATC-GTTA------TTAGTAATAgtggtt-------------tttctgatttcataaTTC----------TTTTCCAAGATAATTA-GTGATAGAG----AACGTCATCT----GATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  214659 1184 -   375229 I

a score=1705.000000
s ce10.chrX             4280165 4 + 17718866 CAAA
s cb4.chrX              9386239 4 + 21540570 taaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1240763 4 -  4500979 caaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2529226 4 +  4147112 TAAA
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold17084  214659 1184 -   375229 I
e caeSp111.Scaffold622    13091 48 +   386604 I

a score=-4821.000000
s ce10.chrX             4280169 65 + 17718866 G--------TGA-------GTTTAATTTCGCAAAATTAatatatatttatatatatatatataAAGAGACGTCTGCTTAC
s cb4.chrX              9386243 41 + 21540570 aaa------tgaatcagc-GTCTGACCT-------------------------TATAACTGT--CTCAATTTCAG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1240767 56 -  4500979 aaatggtcGTGACTCAATAGTCTGGTATGACTA-------------------GTATAAATACAGTGAAATTTCAG-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2529230 47 +  4147112 I
e caeJap4.Scaffold17084  214659 1184 -   375229 I
e caeSp111.Scaffold622    13091 48 +   386604 I

a score=0.000000
s ce10.chrX             4280234 3 + 17718866 TTG
e caePb3.Scfld02_0      2529230 47 +  4147112 I
e caeJap4.Scaffold17084  214659 1184 -   375229 I
e cb4.chrX              9386284 0 + 21540570 C
e caeSp111.Scaffold622    13091 48 +   386604 I
e caeRem4.Crem_Contig0  1240823 0 -  4500979 C

a score=3012.000000
s ce10.chrX             4280237 47 + 17718866 AGTCATTTTTTGC--TTCACATTTTGTACAGTTTGT--TTCAGGTAACCAG
s cb4.chrX              9386284 38 + 21540570 -GCCATTCC------TTTGAATTTCGTCTCA----T--TTCGAGTACCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1240823 45 -  4500979 -GtcaattcttgattttttcatatcgTCTGA---TT--TTCAGGTATCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    13139 45 +   386604 gatcatttt------ttgaagtctgattcttttttttgttcaggtAATCGT
i caeSp111.Scaffold622  I 48 C 0
s caePb3.Scfld02_0      2529277 43 +  4147112 GGTCAATTT------CTGCAGTTTTGTCTGGTTTTT--TCCAGGTAATTAT
i caePb3.Scfld02_0      I 47 C 0
e caeJap4.Scaffold17084  214659 1184 -   375229 I

a score=55436.000000
s ce10.chrX             4280284 131 + 17718866 TAAATGCAACCGCAAAAAACTATTCCAGAAAAAGAAGAAA-----CATCAG------TTTTAAAGAAAGAAGAAAGTCCTCCGCATTTGTCTTCAATTTTCGATGGTATGTCAAATGTCTCAGATGCGGTTAATTATGTGGG
s cb4.chrX              9386322 137 + 21540570 TAGATGCAAACACAAAACAATTCCGAGGAGCAACCATCAA-----CATCAAGTGAAGCTccgaaagaagaagacagtCCTCCACACTTAACTTCAATATTTGATGGCATGTCAACAACTTCACACGCTGTCAAtcgagtgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1240868 131 -  4500979 TAGATGCAACCTCAAAAAAGTATAGAAGAGCAAGAATCAA-----CATCGA------CTAGGGAAAAAGAGAGCAGTCCACCACAGTTATCTTCGATTTTCGATCGTATGTCAACAACCTCTCACGCAGTCAATCGAGTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    13184 128 +   386604 TAGATGC---CACAAGAAAGTAACGAGCAGCAAGGATCAG-----CGTCAA------CTTCAAGTGAAAAAGTTACACCTCCTCAGTTATCTTCCATATTCGACTGTATGTCAACAACTTCAGCCGCAGTCAATAAAGTGAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2529320 131 +  4147112 TAAATGCATacacaaaaatcaatcgaGGAACAGGAATCAA-----CATCAA------CTCCAAAACGAGAAGACAGCGTACCACAGTTATCTGCAATTTTCGACTCAATGTCAACAGTGTCAAACGCTGTCAATAAGGTGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  215843 131 -   375229 TAAATGCTACC-----AAACCATTCGGGAAGTGACATCGAAGATTCACCAa------ttcaacaaccttctggaaGTTCTGTGCCACTGTATTCACTGTTTCAAGAAATGTCAGCAATGTCAGATGCGGTTAACAATGTAAG
i caeJap4.Scaffold17084 I 1184 I 857

a score=-5414.000000
s ce10.chrX             4280415 23 + 17718866 TTTTTCTTATAAATTATTAGCTT------
s cb4.chrX              9386459 16 + 21540570 ttttttt-------------tgttatgtt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1240999 23 -  4500979 TTTCTTT------TTGATGGTATTAACTT
i caeRem4.Crem_Contig0  C 0 I 1200
s caeSp111.Scaffold622    13312 24 +   386604 TATTTTTAACGA-TTGGTactgttt----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2529451 25 +  4147112 TATGTTAAACCAGTTGCAAGTGTTG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  215974 857 -   375229 I

a score=-2067.000000
s ce10.chrX             4280438 28 + 17718866 TAATTTAATTTCTCATGAAAAATTTTAA-----
s cb4.chrX              9386476 29 + 21540570 ----ttaaccagttttgcaagacttttatttaa
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622    13336 27 +   386604 ----tgaaatattttttcaaaataataatgg--
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2529476 24 +  4147112 ----Ttaactgtttt---gaaatgattttaa--
i caePb3.Scfld02_0      C 0 I 1305
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=-20961.000000
s ce10.chrX             4280466 390 + 17718866  
s cb4.chrX              9386505 340 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    13365 454 +   386604  
i caeSp111.Scaffold622  I 2 I 63
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=-505.000000
s ce10.chrX             4280856 35 + 17718866 TCGAATCATGAGTTGTCGATAAAACAATCGGTTGC
s cb4.chrX              9386845 16 + 21540570 -------GGGGGTTG--GA----------GTTTGc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeSp111.Scaffold622    13819 63 +   386604 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=-11480.000000
s ce10.chrX             4280891 265 + 17718866 ---AAAAATGATTGTAGTTCTT--CAGTTTTTCAACTCATAAACA---------------CAAGTATAATTTC---ACTGTTATCAGATCGCATCTTCTTCTTCTTCTTCGCATTTTAAAGAGGAGAACAC----TTCCACTCGACAACCAACGAGTCTATTCGAAAATTTACAAAAACTCGCCGACATGCCGGTTAATACTGAGACTCGATTGAAACGGAAAAGACCAAATCTTGGCAATTTCACCCATGATGTTGTAAGTTGAACTGGA-----AACTATTGGGCTAAATTTTTG
s cb4.chrX              9386861 219 + 21540570 -ggaagaaattttttgacattttgaccACTATAAGTTCACAA------------------TTAGTCACTTTACTATTGTTTTATCTGAAC----CCCGCCCTGGTTTTTCATG-AGTAATCAGGAAAACAA----TTAGCTATGCTAACCAG--------CTTAGTAAAAAAGAA----T------TCCGACAAACAATACTGAG--------------GTAGCGGCACAATTTCGA-------------ACTGTTGTAAATTG-TTTAGAGCCACAAAAAT-GAGTCACATTT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    13882 245 +   386604 AAGAATGACTCTTGCAacattt--ataatttttagtttataACCTTTTCCGATGGTGAATCCAGTCACGTCTC---TTCCTTATTTAAA--------ATCATTATTCTGCATGTAGTAGACTGCGGAACGACATTTTGCAAATACGAATCGGAAA--TTACTCACGAAAATAGtaaattt------tattccaaataAGTCTGAGTC---ATCGAAA--ACAACGCCTAACTTCCCA-------------ACtg--ataatttgattttga-----aaaact------atacTTTCG
i caeSp111.Scaffold622  I 63 I 225
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=-1786.000000
s ce10.chrX             4281156 241 + 17718866 GGGAAAAGAAACATTTGCAGAGAACTTATCCAGATATTTCGCCTCCAACTCCAACGAATTCACATATTCGTTGCTGGGCACAATTTTCGATTGCACAACAGCTTCGTGAGTATTTTTTTGAAAATGTTCCATTTCAATTTAAAACACTTTGTTCAAC-CTATTTTT----------GTTGCTGACGGCTGGAAATGCTCT---GCTTACAGAAACA-TTTTCAAAA------AACCGCTCGCACTTTTTCCA-CACTCTATGG
s cb4.chrX              9387080 218 + 21540570 --GATAAGAAGAACTGTTAATAAACT-----GGAGAAT-------CAACTC-----AACTCATC-------------GCGTAActtt---tttca--------tcgtcacccattttt--aaaacgctcttcttcttttttctcttcttcatttcaCGCTATTATCAGATCACAACGCCGAGCACGGACGAGGTTGCGCCCGAGCGTCCAACGTCAGTTTTCGAAAGTTTACAAATGCTCACCCGACTTCCAATACGTCCTGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeSp111.Scaffold622    14127 225 +   386604 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=-3212.000000
s ce10.chrX             4281397 43 + 17718866 AAAGGTTGAGAAACTGATAGGCAAATA--GTCAATTTGGCAGAGT---------------
s cb4.chrX              9387298 51 + 21540570 ---------AGAGCATTTCGTGAGAAAGCGAAAACGAGTGAGGATTCATTTTGATCAAGT
i cb4.chrX              C 0 I 201
s caeSp111.Scaffold622    14352 52 +   386604 ACCAGTTGAGGAACATgttagaaggaa--aaaaatgagattagATCTCTCTGAG------
i caeSp111.Scaffold622  I 225 C 0
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=228.000000
s ce10.chrX             4281440 59 + 17718866 ATAGCACTTATTCTTTG-----TTGAATTTGTGGGTTCTAGGCCG-----TTACTTACACTGAATTCGC
s caeSp111.Scaffold622    14404 67 +   386604 GtaactgttttcttttaattattttaatttgttTATATTCAGCCAATTTACTACCCAGAC--AATTCAC
i caeSp111.Scaffold622  C 0 I 85
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e cb4.chrX              9387349 201 + 21540570 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=0.000000
s ce10.chrX             4281499 76 + 17718866 TAAAATAATATTTTCTGTTTGTGTGTTTTTTTTTCAGATGTCCGTACAATATTTTTAACTAATTTTGAATCGGCGA
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e cb4.chrX              9387349 201 + 21540570 I
e caeSp111.Scaffold622    14471 85 +   386604 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=446.000000
s ce10.chrX             4281575 32 + 17718866 TCAAATGCTG---AAAAATATTTGATAATGTATTC
s caeSp111.Scaffold622    14556 29 +   386604 tcaaatGTTGTTTCATAATAATTAATAAT------
i caeSp111.Scaffold622  I 85 C 0
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e cb4.chrX              9387349 201 + 21540570 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=0.000000
s ce10.chrX             4281607 1 + 17718866 T
e caePb3.Scfld02_0      2529500 1305 +  4147112 I
e caeJap4.Scaffold17084  215974 857 -   375229 I
e cb4.chrX              9387349 201 + 21540570 I
e caeSp111.Scaffold622    14585 0 +   386604 C
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=3446.000000
s ce10.chrX             4281608 18 + 17718866 TTACAGCATGCGCAGTTC
s cb4.chrX              9387550 12 + 21540570 tttcagcataCG------
i cb4.chrX              I 201 C 0
s caeSp111.Scaffold622    14585 12 +   386604 TTCCAGCATACA------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2530805 12 +  4147112 TTTCAGCATACG------
i caePb3.Scfld02_0      I 1305 C 0
e caeJap4.Scaffold17084  215974 857 -   375229 I
e caeRem4.Crem_Contig0  1241022 1200 -  4500979 I

a score=7684.000000
s ce10.chrX             4281626 47 + 17718866 CATCTTTTCCAACTTCTCTTTTTCCATTACCCATCATGAATGATGAG
s cb4.chrX              9387562 41 + 21540570 ------TCCCTAGCCCGGTTTACCCGTCACCGATTATGAATGACGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1242222 47 -  4500979 CATATGTACCCAGTCCAGTGTTCCCACCAGCCGTTATAAATGAAGAC
i caeRem4.Crem_Contig0  I 1200 C 0
s caeSp111.Scaffold622    14597 41 +   386604 ------TTCCGAGTCCAATTGTTACCATCCCACCTGTATCTGAAGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2530817 41 +  4147112 ------TTCCTAGCCCTATTTTCCCGATTCCGCCAATCAGCGATGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  215974 857 -   375229 I

a score=24073.000000
s ce10.chrX             4281673 31 + 17718866 CCAATGACAGATGACGAACTTGTGAAAAGTT
s cb4.chrX              9387603 31 + 21540570 CCAATGACAGATGACGAACTTGTCAAAAGTA
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1242269 31 -  4500979 CCTATGACTGATGACGAACTGATTAAGAGTA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622    14638 31 +   386604 CCCATGACGAATGATGAACTCGTTAAAAGTA
i caeSp111.Scaffold622  C 0 I 36
s caePb3.Scfld02_0      2530858 31 +  4147112 CCAATGACGGATGATGAGTTGATAAAAAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  216831 31 -   375229 CCATTGACAGATGAACAATTAATGTTAAGTA
i caeJap4.Scaffold17084 I 857 C 0

a score=-8058.000000
s ce10.chrX             4281704 36 + 17718866 TGTGATTAGA--AAAGTAATTACTAGA--AATACTAACTA---------
s cb4.chrX              9387640 32 + 21540570 CAAGGGTCTA--AACATGATTC----A--ATTGTTGTTTA---------
i cb4.chrX              I 6 I 2
s caeRem4.Crem_Contig0  1242306 28 -  4500979 TGCGTTTTGA--AA----GCca----a--catatttttta---------
i caeRem4.Crem_Contig0  I 6 I 2
s caePb3.Scfld02_0      2530889 34 +  4147112 TGATTTTTAT--CAGGTTTTCC----ATccttattttctg---------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  216862 40 -   375229 ---GGTTTGATCaaagttattt----a--ttttttatcaataaaatttt
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    14669 36 +   386604 I

a score=154912.000000
s ce10.chrX             4281740 220 + 17718866 TTTCAGTGAAAGGGCCATCCCGACTAATTGGTTTTCTGGTTCATCTAGCTATGAATGAAAGAGCCAGGAAAGCCTTAAGATGGACTGGAAACGGTCTAGAGTTTGTTCTTGTCAATAAAGAACTGGTTGCAAAGATGTGGGGCAACCGGAAACATAACACCAAA-------------------------------------------------------------------------------GATATGGATTATTATAAATTGTCAAGAGCGATTCGGGAGAAATATGAGAAAAAAGA
s cb4.chrX              9387674 267 + 21540570 TTTCAGTGAAAGGTCCATCTCGGCTCATCGGATTTCTCGTACACATTGCAATGAATGAAAAAGCAAGGAGGGCTTTGCGATGGACTGGTAATGGACTGGAATTCGTTCTTGTGAATAAGGAGCTGGTGGCTAAGATGTGGGGGAACCGAAAACACAATACCAAGGTTAGTTTTA---------CTGCAA----TTT----GTTCA--------TTCAATATT----CTTGA---ATATTTTAGGATATGGATTACTATAAATTGTCCAGAGCCATTCGGgagaaatatgagaaaaagaa
i cb4.chrX              I 2 I 21
s caeRem4.Crem_Contig0  1242336 290 -  4500979 ctttagtGAAAGGTCCTTCTCGTCTCATTGGATTCCTGGTGCACATCGCTATGAATGAAAGAGCAAGGCGAGCTCTTCGATGGACTGGCAACGGTTTGGAATTCGTTCTCGTGAATAAGGAGTTGGTAGCAAAGATGTGGGGAAATAGAAAACACAACACAAAGGTGAGTATTATCT--AGTTCTAAAAAGCCTGT----ATTCAGTAGGACCTGCAATATTACAATGTAC---ATTTTTCAGGATATGGACTATTATAAACTTTCACGGGCAATTCGAGAGAAATATGACaagaaaaa
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    14705 264 +   386604 TTTCAGTGAAAGGACCTTCCAAACTCATCGGATTCCTTGTGCACATTGCAATGAACGAGAAAGCACGCCGTGCTCTGCGATGGACAGGAAACGGATTGGAATTTGTTCTTGTCAATAAGGAGTTGGTTGCGAAGATGTGGGGTAACCGAAAACATAATACTAAAGTGAGT-------------GAGACA----TAT-ATGATTCC--------TTGTAATTG----TATTC---TGTTTATAGGATATGGACTACTATAAGCTGTCGAGAGCAATTCGGGAAAAGTATGACAAGAAG--
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2530926 263 +  4147112 tttcagtgaaaggTCCATCACGACttattggatttttggttCATATTGCTATGAACGAGAAAGCTAGAAGAGCTCTCCGATGGACTGGGAATGGTCTGGAGTTCGTTTTGGTGAACAAAGAATTGGTAGCTAAAATGTGGGGAAACCGGAAACATAACACAAAGGT------------------AGCTA----TTTCAAGCGTCT--------TACTGTTTT----TATTCACTGGTTTGCAGGACATGGACTATTATAAACTGTCGAGAGCTATCcgagaaaaatatgagaagaaa--
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  216902 270 -   375229 ttgcaggAAAAGGTCCATCTCGTTTAATAGGGTTCCTCATAGACATTGCTATGGATGAAAGAGCGAGAAAAGCTTTGAGATGGACGGGACAAGGCTTGGAATTTATTCTTATTAATAAAGAACTGGTTGCGAAAATGTGGGGAAATAGAAAGCATAATACAAAGGTGActattttattaaatttcagtATACATAT-----------------AACTGAGCC------------CGTTTTCAGGACATGGATTACTACAAACTGTCCAGAGCGATCAGAgaaaaatacgacaaaaagga
i caeJap4.Scaffold17084 C 0 C 0

a score=-6426.000000
s ce10.chrX             4281960 24 + 17718866 --TAAG---GCTGACAAGAATATTAAACC
s caeRem4.Crem_Contig0  1242626 18 -  4500979 ----------tacatcaaattCAAAGGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    14969 17 +   386604 ------------GATAAAGATCCGAAGTt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2531189 17 +  4147112 ------------gaCAAGAATCCCAAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217172 21 -   375229 attgaactcggtgacgaaaac--------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9387941 21 + 21540570 I

a score=26837.000000
s ce10.chrX             4281984 29 + 17718866 AGGAAAGCTGAAAAAGGGAACACGTAAGT
s cb4.chrX              9387962 29 + 21540570 aggaaaattgaaaaagggaACAAGTGAGT
i cb4.chrX              I 21 I 638
s caeRem4.Crem_Contig0  1242644 29 -  4500979 AGGAAAACTTAAGAAAGGAACTagtaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    14986 29 +   386604 cggaaaattgagaaaaggaaCAAGTTAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2531206 29 +  4147112 TGggaagctgaaaaaaggaacCAGTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217193 29 -   375229 aggaaaactgaaaaaaggaTCACGTGAGT
i caeJap4.Scaffold17084 C 0 C 0

a score=-11239.000000
s ce10.chrX             4282013 36 + 17718866 TGTTTTACTTATTTTA----TATGTTAGTC-----------TCTGATAAAT-
s caeRem4.Crem_Contig0  1242673 47 -  4500979 ----tttttgattttcagaatacccTGATTCACAGCAacaatctttcgaaa-
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622    15015 25 +   386604 -------TTTCTCCCC----TTCTGT---------------TTTCATCATC-
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0      2531235 44 +  4147112 -------CTTCTTTTCAGAGTTTTGTAGttctttgaataaattttctcaTT-
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17084  217222 37 -   375229 ----ATCCTTCTATGCATGCcagtttgatt-----------ttttgttgcat
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9387991 638 + 21540570 I

a score=121699.000000
s ce10.chrX             4282049 180 + 17718866 TTACAGGAACCTACTCATATGTTTTTACGGAACATGCATATCCTGATCTCATGAATCAAACAGAGAAAGATATCAATTTCATTACAAGATTTGCAGCCGACATCGGGCAAAAATATAGTGACAATAGTGATTTGAACAATGTAAATTCACCGAAATCGCCAAGTCCACAAAATAGTGATT
s cb4.chrX              9388629 180 + 21540570 TTTCAGGAACATATTCCTACGTCTTCACCGAGAATGCATATCCCGACCTTATCAATCAAACCGAAAAGTCGATCGAATTCATAAACAACTTTGCAGTGCAAATCGGAAACAAATATCACGATAACAGCGACCTGAATAACTCAAACTCCCCACAAGCACCCAGCCCGGTGAACAGTGATT
i cb4.chrX              I 638 C 0
s caeRem4.Crem_Contig0  1242726 180 -  4500979 ttttaggGACATACTCTTATGTGTTTACGGAGAATGCCTACTCTGATCTTATCAACCAGACCGAGAAATCGATTGAATTCATCACAAACTTTGCGATGCAAGTTGGGCACAAATACCTCGATAACTCAGACCTTAACAATTCTAACTCTCCACAGGCACCCAGTCCATTGAATAGTGATT
i caeRem4.Crem_Contig0  I 6 T 566
s caeSp111.Scaffold622    15047 180 +   386604 TTTCAGGAACATACTCCTATGTGTTCACAGAGAATTCCTATCAAGACCTCTTCAATCAAACTGGAAAATCGATTGAGTACATCACAAATTTTGCATTAGAAATCGGGAACAGGTATCATGATAACGCCGACCTCAACAATTCCAACTCACCATTGGCGCCGAGCCCGTTGAATAGCGATT
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2531303 180 +  4147112 tttcaggAACGTATTCCTATGTGTTTACGGACAATTCCTACCAAGACCTTAtcaatcaaactgaaaaatcgattgactTCATCTTAGACTTTGCGACCCAAATCGGGAACAAATACCATGATAACAACGACCTCAACAACTCTAGCTCTCCACTGGCACCCAGTCCGTTGAATAGTGATT
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17084  217259 176 -   375229 -ttcaGGCACATACTCCTACGTGTTCACGGAAAACTCATACTCTGATCTCGTCAGCCAAACTGGTCAATCAATTGAATACATTGAACagtttgcagaaaaaattggaaataagTATCGGGAAA---CTGATATAGCTGTATCCAGTTCTCCACAGGCTCCAAGTCCACAGAACAGCGAGT
i caeJap4.Scaffold17084 C 0 C 0

a score=910.000000
s ce10.chrX             4282229 1 + 17718866 A
s cb4.chrX              9388809 1 + 21540570 A
i cb4.chrX              C 0 T 1164
s caeSp111.Scaffold622    15227 1 +   386604 A
i caeSp111.Scaffold622  C 0 T 550
s caePb3.Scfld02_0      2531483 1 +  4147112 A
i caePb3.Scfld02_0      C 0 T 581
s caeJap4.Scaffold17084  217435 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=423.000000
s ce10.chrX             4282230 86 + 17718866 AC------TAGTTTTTGGAGTTCAACAAATATTTTGTAATTATTGTCATAGAATCGAAGCACTGTTCTTTTTTGTCAATGTCTTTATTCATT
s caeJap4.Scaffold17084  217436 76 -   375229 ATTTACAGTTGTTTTGATAAATCAATAAGAACAGTAtgcttgttgt----------------tgttgtttattATCTACCTCCTCATAAATT
i caeJap4.Scaffold17084 C 0 T 634
e caePb3.Scfld02_0      2531484 581 +  4147112 T
e cb4.chrX              9388810 1164 + 21540570 T
e caeSp111.Scaffold622    15228 550 +   386604 T
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=0.000000
s ce10.chrX             4282316 710 + 17718866  
e caePb3.Scfld02_0      2531484 581 +  4147112 T
e caeJap4.Scaffold17084  217512 634 -   375229 T
e cb4.chrX              9388810 1164 + 21540570 T
e caeSp111.Scaffold622    15228 550 +   386604 T
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=6.000000
s ce10.chrX             4283026 5 + 17718866 TTTAT
s caeSp111.Scaffold622    14678 5 +   386604 CTCAG
i caeSp111.Scaffold622  T 550 C 0
e caePb3.Scfld02_0      2531484 581 +  4147112 T
e caeJap4.Scaffold17084  217512 634 -   375229 T
e cb4.chrX              9388810 1164 + 21540570 T
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=966.000000
s ce10.chrX             4283031 6 + 17718866 TTTATT
s caeSp111.Scaffold622    14683 6 +   386604 TCTAAT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  216878 6 -   375229 tttatt
i caeJap4.Scaffold17084 T 634 C 0
e caePb3.Scfld02_0      2531484 581 +  4147112 T
e cb4.chrX              9388810 1164 + 21540570 T
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=819.000000
s ce10.chrX             4283037 3 + 17718866 TTT
s caePb3.Scfld02_0      2530903 3 +  4147112 TTT
i caePb3.Scfld02_0      T 581 C 0
s caeJap4.Scaffold17084  216884 3 -   375229 ttt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9388810 1164 + 21540570 T
e caeSp111.Scaffold622    14689 0 +   386604 C
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=-6063.000000
s ce10.chrX             4283040 22 + 17718866 TCTATGC----------ATTTATCAA----AATTTC----
s cb4.chrX              9387646 32 + 21540570 TCTAAACATGATTCAATTGTTGTTTA----CTTTTC----
i cb4.chrX              T 1164 C 0
s caeSp111.Scaffold622    14689 19 +   386604 -----------------TATTCTGTAACGTTGTTTT----
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2530906 23 +  4147112 TCCATcc---------ttattttctg----tttttt----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  216887 19 -   375229 -----------------tatcaataa----aattttttgc
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1242906 566 -  4500979 T

a score=126688.000000
s ce10.chrX             4283062 158 + 17718866 AGTGAATGGACCAAACCGATTAATTGCATTTCTTGCCGATCTTGCGATGAATGAGAAAGCTGGCCGAGCTCTACACTGGACTGGAAATGGCTTGGAGTTTGTTATTGTGAATACCAAGCTGGTTTCAAAATTATGGGGAAATCGAAAGCGTAATACAA
s cb4.chrX              9387678 158 + 21540570 AGTGAAAGGTCCATCTCGGCTCATCGGATTTCTCGTACACATTGCAATGAATGAAAAAGCAAGGAGGGCTTTGCGATGGACTGGTAATGGACTGGAATTCGTTCTTGTGAATAAGGAGCTGGTGGCTAAGATGTGGGGGAACCGAAAACACAATACCA
i cb4.chrX              C 0 I 1221
s caeRem4.Crem_Contig0  1242340 158 -  4500979 agtGAAAGGTCCTTCTCGTCTCATTGGATTCCTGGTGCACATCGCTATGAATGAAAGAGCAAGGCGAGCTCTTCGATGGACTGGCAACGGTTTGGAATTCGTTCTCGTGAATAAGGAGTTGGTAGCAAAGATGTGGGGAAATAGAAAACACAACACAA
i caeRem4.Crem_Contig0  T 566 C 0
s caeSp111.Scaffold622    14709 158 +   386604 AGTGAAAGGACCTTCCAAACTCATCGGATTCCTTGTGCACATTGCAATGAACGAGAAAGCACGCCGTGCTCTGCGATGGACAGGAAACGGATTGGAATTTGTTCTTGTCAATAAGGAGTTGGTTGCGAAGATGTGGGGTAACCGAAAACATAATACTA
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2530930 158 +  4147112 agtgaaaggTCCATCACGACttattggatttttggttCATATTGCTATGAACGAGAAAGCTAGAAGAGCTCTCCGATGGACTGGGAATGGTCTGGAGTTCGTTTTGGTGAACAAAGAATTGGTAGCTAAAATGTGGGGAAACCGGAAACATAACACAA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  216906 158 -   375229 aggAAAAGGTCCATCTCGTTTAATAGGGTTCCTCATAGACATTGCTATGGATGAAAGAGCGAGAAAAGCTTTGAGATGGACGGGACAAGGCTTGGAATTTATTCTTATTAATAAAGAACTGGTTGCGAAAATGTGGGGAAATAGAAAGCATAATACAA
i caeJap4.Scaffold17084 C 0 I 466

a score=613.000000
s ce10.chrX             4283220 2 + 17718866 AA
s caeRem4.Crem_Contig0  1242498 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    14867 2 +   386604 AA
i caeSp111.Scaffold622  C 0 I 46
s caePb3.Scfld02_0      2531088 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=600.000000
s ce10.chrX             4283222 1 + 17718866 G
s caeRem4.Crem_Contig0  1242500 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 70
s caeSp111.Scaffold622    14915 1 +   386604 G
i caeSp111.Scaffold622  I 46 C 0
s caePb3.Scfld02_0      2531090 1 +  4147112 G
i caePb3.Scfld02_0      C 0 I 659
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=6691.000000
s ce10.chrX             4283223 44 + 17718866 ATATGAATTATTCGAAGCTGTCGAGAGCCATGAGGGACAAGTAC
s caeRem4.Crem_Contig0  1242571 44 -  4500979 ATATGGACTATTATAAACTTTCACGGGCAATTCGAGAGAAATAT
i caeRem4.Crem_Contig0  I 70 I 291
s caeSp111.Scaffold622    14916 44 +   386604 ATATGGACTACTATAAGCTGTCGAGAGCAATTCGGGAAAAGTAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=60.000000
s ce10.chrX             4283267 2 + 17718866 AA
s caeSp111.Scaffold622    14960 2 +   386604 GA
i caeSp111.Scaffold622  C 0 I 359
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I
e caeRem4.Crem_Contig0  1242615 291 -  4500979 I

a score=0.000000
s ce10.chrX             4283269 320 + 17718866 GAGTGCAACAAGCGGAGGGCAATTGGAGAAAAGGCCAGGTAATAATTTAATAAGCTGATAGTGGAGCAGGAAATAATCTGATTAAATATAGTCTCCATTAATAGTTTGCAATTTCATTTTAAAGTATAGCAAAATAGTATGCAGTAATATGCACTCTATTGATTGTTATTTGACAAAAAATTCATCTGTTGTCTGGTAAAACTTGAGCAATGCTCATTTTTATATTCTTTTATATTGACTCTTTGTATGCGTTCACATTATATTAAGTCAAAAAAAAAAATTAATTCTCACGATTCCCAAACGCACAGCAATTAAATATA
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I
e caeSp111.Scaffold622    14962 359 +   386604 I
e caeRem4.Crem_Contig0  1242615 291 -  4500979 I

a score=568.000000
s ce10.chrX             4283589 69 + 17718866 AGACAATTAGATGCTTCAGTACTGATAGAGACTGCGAGATTATTATTTCGTAAACTATGCAGCGCACAA
s caeRem4.Crem_Contig0  1242906 45 -  4500979 AGACATTCGGGTCCTACgattttgata------------------------agaatatGTAGCAAATAA
i caeRem4.Crem_Contig0  I 291 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I
e caeSp111.Scaffold622    14962 359 +   386604 I

a score=-2444.000000
s ce10.chrX             4283658 50 + 17718866 TACTGATAAAGTAAGTTACCACTGTATTTTGTTTTTTTTTCAGGACTTCA
s caeRem4.Crem_Contig0  1242951 16 -  4500979 -----TCTGAATAAGTT------------TAGT-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    15321 44 +   386604 ---TATTGGGAAAGATT---ACGgttttatagttttcttttagaatttGA
i caeSp111.Scaffold622  I 359 I 57
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=347.000000
s ce10.chrX             4283708 58 + 17718866 CACCTACGCCTTCACTATACAAGCTTACAATGC---TCTCAAAAATCACACAGGAAAAAAT
s caeRem4.Crem_Contig0  1242967 53 -  4500979 -------ATCTTCATT-TAAGAGAATACATTGAGAATCCCAACAAACTTAAATGAAGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I
e caeSp111.Scaffold622    15365 57 +   386604 I

a score=-2083.000000
s ce10.chrX             4283766 33 + 17718866 -----ATTG--AAGATCTCACAATGTTTGCAAAAAATGTT
s caeRem4.Crem_Contig0  1243020 35 -  4500979 CTCGGGTTAGTGACATTAGGCTTCCAT-----GAAACGtt
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold622    15422 26 +   386604 -----ATCA--AACATTTTGCGGTGTT-----GATGTG--
i caeSp111.Scaffold622  I 57 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=-1068.000000
s ce10.chrX             4283799 29 + 17718866 GGCAGAAAACGTCGGGAGGTTTTGACTGG
s caeSp111.Scaffold622    15448  7 +   386604 TGTAACA----------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I
e caeRem4.Crem_Contig0  1243055 33 -  4500979 I

a score=-6987.000000
s ce10.chrX             4283828  66 + 17718866 ATAGACTTTT-------TTTCTA-----------------------AAATGTATATAATGTGTATAGTCTCCATGTATAGTTTGT-----------AGTTTCATTTC-----------
s caeRem4.Crem_Contig0  1243088 113 -  4500979 ATACTCTTTTTATTTGTCTCCCATTCGCATTTTGATGCCGTTTGAGGCTCataatcagtttttct----tcGGTGTATT-TTTGTAACATTCCCAAAACATAACCAAGCTAGCATTTC
i caeRem4.Crem_Contig0  I 33 I 19
s caeSp111.Scaffold622    15455  49 +   386604 -----------------TTCCCA-----------------------AAATATAGCCAACT---------------TAGA-TTTGT-----------AAAATAACTTGAAGAACAGT--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2531091 659 +  4147112 I
e caeJap4.Scaffold17084  217064 466 -   375229 I
e cb4.chrX              9387836 1221 + 21540570 I

a score=24883.000000
s ce10.chrX             4283894 70 + 17718866 ACAATGTACTAGAAAAATAAATATAAAATCAAATTTGCTGATGTTT-----------------GGTGTCTGTACAATTGTACCTCCT
s cb4.chrX              9389057 70 + 21540570 ACAATGTTTTCGAACAATA-----------AAATTTATGCAcgttttttgcgatttttcctTCCATGTTTGTACAGTTGTA------
i cb4.chrX              I 1221 C 0
s caeRem4.Crem_Contig0  1243220 57 -  4500979 ACAATGTTGTCGAATAATA-----------AAATTTATGCACGTTTTTCA-------------TATGTTTGTACAGTTGTA------
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold622    15504 57 +   386604 ACAATGTtgttggaaaata-----------aaatttatgcacgttttttt-------------gatgtttgtACAGTTGTA------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2531750 56 +  4147112 ACAATGTTgtcaaacaata-----------aaatttatgCACGTTTTGCC-------------T-TGTTTGTACAATTGTA------
i caePb3.Scfld02_0      I 659 C 0
e caeJap4.Scaffold17084  217064 466 -   375229 I

a score=-2411.000000
s ce10.chrX             4283964 154 + 17718866 GGTACATCA--------TTGTTTTGACTTTTCC-------------TCACtttt-----------atattatataat-tgtaata--aattattCACCAAT--GTCCAATACGTTCAT-TTCTGTCT--------GCTCCTTTTGTCTAT-----------CGGCTTATTTTTGTAGCTT--CTTTTCAAAAGAAT--------GCGGCGCTGAGTCAG--TT
s cb4.chrX              9389127 190 + 21540570 --TACCTCAGTTTTTCCtcatgttcttcttctcctccttgcTTCCCTCagctttcgaaaaaagttatattttcttAT---GAAAAGCAATTATTCATCAATTGTGTGACTACGTTTCT-TGTtg----ttctcgttttttcttttgtcaA-----------CTACGGCTTGTTTTGC-----AActgcaaaa-----agagaaaaca--gcTGAGTCAGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1243277 183 -  4500979 --TACCtcg-------ctcttctttttttttgcctcttt-------tcaacttt---gaaaagttctattt--ttat---aaaag--AGTTATTCATCAAT--TGCGAATACGTCCTG-TGTTGTTCCTTcccgtttttcttttgtttat-----------cAGCTTGTTGTTTTGTTGGCAGACTCCAAAAGAAACAGCGACAACAGTGCTGAGTCAGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    15561 167 +   386604 --TACCTCT--------TTTCATCGACTTTTCCCTCT---------ACAACCCt---catatatatttttataagaa---gaaaa--agttattcaTCGAT--TCCGAAtacgtttttttgttgttccttccca-ttttcttttgtctAT-----------TAGCTTGTTTTCTGGTC----GACTTCAAAAGAAA---------CGGTGCTGAGTCAG--TG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2531806 178 +  4147112 --TACCtcg--------tcttctcttcttttttcttctt----ctggcaTCCCT---CAACAGTTCTTTTTCATG-------AGA--AGTTATTCACCAAT--CTCGAATACGTTTTTCTGTTGTTCcttgtta-ttttcttttgtctaT-----------CACCTTGTTTTCTGGTC----gacttcaaaagaaaaagcaacGGCGGTGCTGAGTcag-ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217530 148 -   375229 --------------------------------------------------------AGTACAATGTTGTCTGGTGATTTTTATAA--AATGACTCATccat--ttcttttgttttctggctttgttttg------tttccttttttttacaaaaaaaacaacaactgtATGTAGAAAAAT--GAgtctaaaa-----atagaaaagcgcGTTGagtcag--tt
i caeJap4.Scaffold17084 I 466 I 81

a score=21562.000000
s ce10.chrX             4284118  98 + 17718866 -GAAGTC-ATTTGTGG-TGGTATTTATGGTTGAAAAACAAAAAAACCAGTC-------GCTTACACAATTTCTTATCTATT------TT---AACACC----GCA-AACTAGCTGACAAACA
s cb4.chrX              9389317 108 + 21540570 GGGAGACGATTTTTGG-CTATATTTAagatagaaaaacaaaaca--gacTCACGACTCATTTC------TGCTTATCAGTT-CACTGCT---ATCACCACAATCG-GACGGACGAGCAAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1243460 102 -  4500979 -GAAGAC-ATTTCTGA-TGGTATTTATggtagaaaaacaaaaca--aagtc------cttttcttcaatttcttatcaatt-tgcAGTT---ATCACC----TCA-TAGTGACTAGCAACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    15728 105 +   386604 -GAAGAC-ATTTGTGGCCGGTATTTATGATTG-AAAACAAAGCa--caatc------ttcttttttattctcttatCACTC-CTCCACTCGCATCACC----ACA-AACTAACTCACAAACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2531984 103 +  4147112 -gaagat-ttttgtgg-CGATATTTATGTTAGAAAAACAAAGGA--ctgtc------ttc-tttttattcGCTTATCAGACGCAACACT---ATCACT----ACAGAACTAACTAACAACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  217678  81 -   375229 I

a score=115050.000000
s ce10.chrX             4284216 181 + 17718866 TGTATGATCGGAGTTGGTTTGAATTTTATGTTTCAAAATGTCATTTGAGGAGAAGCTGTAAGTA--------------ATAGTG--TAACAATAATGCAAACACA-AACTTTT-------------------TGTTTAGCATATGAGTGGTTATGGTCGTTTGTGTTTAGATTGTTAATGAATCCAGAGGCATGTTCAATTGTTACTTTTATAGGT----T
s cb4.chrX              9389425 197 + 21540570 TGTTTGATCGGTGCTGGTTTGAATTTTATGTTGGAAAATGTCATTTGAGAAGAAACTGTAAGTACCGATTGAAGAATTAGGCAAAGTGC-GTTGGTGTAAACAAA-ATTTCTC------------------GAGTTCAGCATATGAGTGGTTGTGGTCGTTTTTGTTTCGATTGTGCATGAATCCGGAAGCGTGCTACATTATCACATTTATCGGT----T
i cb4.chrX              C 0 I 624
s caeRem4.Crem_Contig0  1243562 179 -  4500979 TGCATGATCGGAGTTGGTTTGAATTTTACGCCGGAAAATGTCATTTGAGAAGAAACTGTAAGTA--------------ATGCA---TGT-GATGATGTAAAC-AA-GTGTTTT------------------GAGTTCAGCTTATGAATGGTTGTGGTCGTTTCTGTTTAGGTTATGTATGGATCCGGAAGCGTGTTCTATAATTACATTTATTGGT----T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    15833 180 +   386604 TGTTTGATCGGAGCTGGTATGAATTTTATGCCGGAAAATGTCATTTGAGAAGAAACTGTAAGTA--------------CTGATA--TCA-ATAACTGTAAACAAA-TCGTCTT------------------GTGTTCAGCATATGAGTGGTTATGGTCATTTTTGTTCCGACTTTGTATGAACCCAGAGGCATGCTCCATTATTACATTTATCGGT-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2532087 185 +  4147112 TGTTTGATCGGAGCTGGTTTGAATTTTATGTCAGCAAGTGTCACTTGAGAAGAAACTGTAAGTA--------------ATGAAA--CGA-TATGAAGCAAACAAACTGGTCTC------------------GTGTTTAGCATACGAGTGGTTATGGTCGTTTTTATTTCGGTTATGTATGGACCCGGAAGCGTGTTCTATCATCACATTCATCGGTAGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217759 178 -   375229 TGTGTCATCGCTGTTTCATT----------------ACTACCACCTGAGAAGAAACTGTAAGTC--------------A-------TAA-GTCATCgtgtataat-ttttttcatattgcaaaaaaaaacgacgtttAGCATATGAATGGTTGTGGTCGTATTTGTTTCGATTATGCATGAATCCAGAAGCGTGTTCTATTATAACATTTATAGGT----T
i caeJap4.Scaffold17084 I 81 C 0

a score=-11821.000000
s ce10.chrX             4284397 37 + 17718866 AGAGTAACTAGAGTTTCGAAATACAAT---------TTCATAAAAA---------
s caeRem4.Crem_Contig0  1243741 36 -  4500979 ----TGTCACGTACATTACAActaaaagt------gttttttctac---------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    16013 35 +   386604 ----TGATTAGAATGTTCAAGCAGAATAT-------TTCATAATAC---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2532272 33 +  4147112 ACAATAATTGGGGacttgaaaagaaaca--------ttcat--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217937 54 -   375229 -GGTCATGTTCAATTTCACCGTTATATGTTTTCTGTTTGTTTATACGTTACATGT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9389622 624 + 21540570 I

a score=46662.000000
s ce10.chrX             4284434 136 + 17718866 T--TCCAGGGGATGGACTAAGATTCAGAATAATTGACATAAAAGCTCTTGCTTTTTTATACTACTATCCAAATGACCGAGACATTTTCACAGACCAGGTATAATG----AATGA----C----------AATTCTTATCA------GTAATTATTGTGGTTT
s cb4.chrX              9390246 138 + 21540570 T--TCCAGGTGATGGGCTACGATTTCGGATTCTCGACTTGAAAGCGTTAGCCTTTTTGTACTATTACCCGAACGATCGTTATGTTTTCACTGATAAGGTATTATTTTTTCCTAG----C----------CACTGTAGTCT------ATAGCCAATAT--TTC
i cb4.chrX              I 624 C 0
s caeRem4.Crem_Contig0  1243779 139 -  4500979 t--ttcaggGGACGGATTACGATTCAGGATACTTGATCTGAAAGCACTTGCATTTTTATATTATTACCCAAATGACcgtttcattttcactgaTCAGGTA---------CCTAGTAAAC----------TCTTCAAATCTTCCAgcataaaaaatat--ttc
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    16048 144 +   386604 TTGTTTAGGGGACGGTTTGAGATTCAGAATACTGGATTTGAAAGCGCTAGCTTTTCTGTATTACTATCCAAATGACCGACACATTTTTACAGATAAGGTAGTTTA---CCCCAG----ATGCCCTACG-TTCTAAGATTG------AT--TTGCTTT--TTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2532305 139 +  4147112 ---TTCAGGTGATGGATTGAGATTCAGAATTCTTGATCTGCAAGCTTTAGCATTTTTGTACTATTATCCGAATGatcgttttattttcactGATAAGGTTTGTTGTATTTCCAG----A---acaatgtttctgaaattg-----------cgAAAT--TTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  217991 130 -   375229 T--TACAGGCGACGGTcttaaattcaaaattctcgATTTGGAAACTCTCGCTCTACTTTACTACTCTCCAAATGATCGTTTCATCTTTTCTGACAGAGTATGTTc----agtaa----a----------ttttttatttt------atagtACATT------
i caeJap4.Scaffold17084 C 0 I 748

a score=162692.000000
s ce10.chrX             4284570 221 + 17718866 AGGAAGTGGTGAATATTTTCAAAAGAGCGCTTTGTCGGAGTCAGGCGATTTGCAACTGCTGGGCATTGCGT-AAACTACAAACCACAAAAATCAATTTT--------AATTCTTATTTACATTCAGAAAATGACGTGTATGATTTCACTACTCTTCGAGACAATGAAATGATGAACTATACAGGGATGGACATGGAACAGCTTCAAAATTATGCATACTGTGTTAGTCCG----
s cb4.chrX              9390384 220 + 21540570 AGGAGGTTATCAATCTTTTCAAAAGTGCGCTCGGCCGAAATCAGGCGATTTGCAACTGTTGGGCAACAAGTGAAACCACAAACCTCAATCATCGATAACGGCggaaag----------aatttcagataacgATGTGTACGATTTCACCAGCttgagagaaaatgagatgatGATTTATTCGGGAATGAATATGGAGCAACTACAGAACTATGCTTACTGTGTCAGCCCG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1243918 223 -  4500979 aggaaGTTATCAATCTATTTAAAAGCGCACTTGGACGGAATCAAGCAATTTGCAACTGTTGGGCAACGAGT-AAACCACAAACCACAAACAATGATAGCAGcgaatcaatt------tattttcagataacgaTGTTTATGATTTCACAAGTTTGCGAGACAACGAGATGATGATTTATTCAGGGATGAGTATGCAGCAGCTTCAGGATTACGCCTACTGCGTCAGTCCA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    16192 222 +   386604 AGGAAGTGATTAATCTTTTTAAGAGTGCACTTGGCCGAAATCAGGCGATCTGCAATTGTTGGGCAATAAGT-GAATtacaaactacaaatacCGATAACAt------gattctca-aaatatttaGATAACGTTATATACGACTTCACGAGTTTGCGAGAGAGCGAAATGATGATATATTCGGGAATGAATATGGAACAACTTCAAAACTATGCATATTGTGTCAGTCCG----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2532444 224 +  4147112 AGGAAGTGGTTAATCTTTTTAAAAGCGCTCTCGGACGAAATCAAGCAATCTGCAATTGCTGGGCAATAAGT-AAACCACAAATCACAAACATCGATAACgtcgaa--aattctt---tttgttcagataACGATGTATACGACTTCACAAGTTTGCGGGAAAACGAAATGATGATTTATTCAGGGATGACTATGGAACAGCTTCAGAATTATGCATATTGTGTCAGTCCG----
i caePb3.Scfld02_0      C 0 I 483
s caeJap4.Scaffold17084  218869 222 -   375229 AGGAAATTGTAAACCTCTTCAAAAGTGCACTTTCACGGAATCAAGCAATTTGCAACTGCTGGGCATTGAGT-AAACTACAAGACacgaaaattgataa---------aattgGCA--TCTTTTCAGATAACAATGTTTACGACTTTACCACATTGCGAGAGAGTGAGATGCAAATTTATACCGGGATGAACATGTCACAACTTGTGAACTACGCGTATATTGTGAGCCCAGTAG
i caeJap4.Scaffold17084 I 748 C 0

a score=5667.000000
s ce10.chrX             4284791 30 + 17718866 CAGACCAAATTGTACAATGACTTTTCAGAT
s cb4.chrX              9390604 30 + 21540570 CAAGCAGAGCACGATGACGATTTTTGTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1244141 30 -  4500979 CAAGGAGAATATGACGATGGATTTTCTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    16414 30 +   386604 CAAAGAGAATATCATGAAGACTTTGACGAT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  219091 26 -   375229 ----CAGAGAAAGATgtggaattttcaaat
i caeJap4.Scaffold17084 C 0 I 1603
e caePb3.Scfld02_0      2532668 483 +  4147112 I

a score=-7466.000000
s ce10.chrX             4284821 77 + 17718866 AGCGAAACTCTTATTCAGTTATAATATTTTTAAGTCT--GTAATAATACTATTT---------------------ATCGATGAAAT--TTGAATAAACTTTT----
s cb4.chrX              9390634 75 + 21540570 AGTGATTCACTGG---AGTAATCACAATTTGCTACTG--ATTATGATAC-AATT---------------------GTGAAATAAATTATTAAATAAATTATA----
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1244171 95 -  4500979 TGTGAATCTCTGA------TATCGCATTATGAATTTGGAGTTAAGAGAA-ACTTAATTGAACGAGAATGAAGACAGtgtatttgaaaatcaaataaagtTTT----
i caeRem4.Crem_Contig0  C 0 I 210
s caeSp111.Scaffold622    16444 58 +   386604 GATGATTCGATTG--------------------------ATGAGAGAAC-ATTT---------------------GGggataaaaacaaaatctagattttcattt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e caeJap4.Scaffold17084  219117 1603 -   375229 I

a score=-481.000000
s ce10.chrX             4284898 23 + 17718866 --TACAATATTTCTTCAAT--AAAACT-
s cb4.chrX              9390723 26 + 21540570 CAAACGAAAACAATCCCAA--GAAATTA
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold622    16502 27 +   386604 tacactatatttattttaaataaaact-
i caeSp111.Scaffold622  C 0 I 73
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e caeJap4.Scaffold17084  219117 1603 -   375229 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=1038.000000
s ce10.chrX             4284921 64 + 17718866 CCATGCTCACT------AGAGAATATTGT------------TAATAGGGA---AATTGCTAGGAAGACAAAACAAACTTTAAATG
s cb4.chrX              9390749 85 + 21540570 CAATGTTATCTGAAAGCAAGGAATATTGTATTCATTCGAAATCCTAGGGACCTGATTTCAAACAAAGCAAAACAAAATTAAGATG
i cb4.chrX              C 0 I 197
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e caeJap4.Scaffold17084  219117 1603 -   375229 I
e caeSp111.Scaffold622    16529 73 +   386604 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=0.000000
s ce10.chrX             4284985 636 + 17718866  
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e caeJap4.Scaffold17084  219117 1603 -   375229 I
e cb4.chrX              9390834 197 + 21540570 I
e caeSp111.Scaffold622    16529  73 +   386604 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=527.000000
s ce10.chrX             4285621 148 + 17718866 TATTTTAGTGGGACATTCACCTTTACATTCTTAAAAATGCCTACTTTACAATTGTCTTTTTTATGAACAGCTTATTTTTTATACCCGTAACTTTCAAATTGAATCAACATATTTCGAATGCATTTTTAGGAACGAGTTTCGCTACTTT
s caeJap4.Scaffold17084  220720 116 -   375229 TATGTtagta--atttttatttttgtaacTTAAAAAATCTCATGTTTGTAATCGTTTTTGTTCGAAGACAATGAAGTGTAATA------------AAATTGAATTAT----TCTCAATTGTGTtgttggg--------------tttt
i caeJap4.Scaffold17084 I 1603 C 0
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e cb4.chrX              9390834 197 + 21540570 I
e caeSp111.Scaffold622    16529  73 +   386604 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=-305.000000
s ce10.chrX             4285769 8 + 17718866 --TTTGCTGT
s caeSp111.Scaffold622    16602 8 +   386604 --TTCTTTGG
i caeSp111.Scaffold622  I 73 C 0
s caeJap4.Scaffold17084  220836 8 -   375229 ttttcttt--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2532668 483 +  4147112 I
e cb4.chrX              9390834 197 + 21540570 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=207.000000
s ce10.chrX             4285777 1 + 17718866 C
s caeSp111.Scaffold622    16610 1 +   386604 C
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533151 1 +  4147112 C
i caePb3.Scfld02_0      I 483 C 0
s caeJap4.Scaffold17084  220844 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9390834 197 + 21540570 I
e caeRem4.Crem_Contig0  1244266 210 -  4500979 I

a score=-1930.000000
s ce10.chrX             4285778  9 + 17718866 TGTTC---AACA----
s caeRem4.Crem_Contig0  1244476  9 -  4500979 TGTTC--Aaac-----
i caeRem4.Crem_Contig0  I 210 I 2
s caeSp111.Scaffold622    16611 11 +   386604 TGttcgaaaac-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533152  9 +  4147112 TGTTC--AAAC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  220845  9 -   375229 ------caaac-aaaa
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9390834 197 + 21540570 I

a score=133152.000000
s ce10.chrX             4285787 274 + 17718866 TTCCTTCCATG---TTTAAATGCGGTTATC----TTC---------AAAGAAAAGGAAGGAGAACAAAACATAGAAAAAGGATGTGAAATCCCGAGTTACTT----------CACCAGCAGTGCAC-AATAGAGCAAGAAAAAAAACCAACGTC-------------------TTCGTTTGGTTA---CGAAGCGA-CTTGTCTCACTTTTCCAGAAGGCTCT---------------------------------------------------TTTTTGCCATCTTTCTCTAGTTTCTCGAACAGAAAACACAATGGAAGCAGATCTCTTGTCAGCTCAGTTTTCTGCTA--TTTCTTCCTTTTTTGCTCA----TCCTT
s cb4.chrX              9391031 275 + 21540570 TTCCTTTTTCA---CACAAATGTGGTTATCTTGTTcc---------taggaaaaga---------agaaagaaaggaaaaaagccaaaaTCCCGAGTTTCTT----------CACCA-------AC-AATGGAACAAG---AAAAACCAACGCC-------------------TGC-TTGGGACACGTCGAAGCGAGCttgtctcatttttccagaaggcCTT-------TCGTT-------------------------------------GCCCCCAACCATCTTTCTCTCATGTCTCAAATAGAAGACATGATAGACTCCGAtctctttcgggctcatttttctgcgcttttcttccttttcctgctcatcttttttt
i cb4.chrX              I 197 C 0
s caeRem4.Crem_Contig0  1244487 257 -  4500979 ttcctttttt----cgaaaatctggtTATC----Tct---------gaggagaag----------------------aaaaagacaaaatccCAAGTTACTTGACGAAAGCGGACCA-------AC-Aatggaacaag--aaaaaaccaaCGTC-------------------TCCGTTTTGTTGGTTCGAAGCGA-cttgtctcatttttccagaagacctt---------------------------------------------------ctttctctatttttctctcgtttctcaAATAGAACACGTGATAGAAACCTATCTCTTTCTGgctcagttttcttttcttttcttcccttttttgctca----ttttt
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    16622 265 +   386604 -ttcttttct----tgcAAATGCGGTTATC----ttc--------aaaaggaaaga---------aaaagatggcGAGAAATGGCGAAATCCCAAGTTTCAT----------CTTCAAAGCAGCAC-Aatggaacaag---aaaaaccaaCGTC-------------------TGCGTTTTGTTGGTTCGAAGCGA-CttgtctcatttttccagagGACCTT----------------------------------------------------CTTCGTCATgtttctctcgtttctcaaaaagacaACACGATAGAAACCGATCTCTGTTTGGCTCActtttctgctctttttcttccttttttgctca----tcttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533161 253 +  4147112 -TATTCTGCT----TGCAAATCTGGTTATC----TTT---------taagggaaga---------aaaaga-----ggaaaaagcaaAATCCCAACTTTCTT----------CACCAAAGCGGCAC-AATggaacaag---aaaaaccaaCGTC-------------------TGCGTTTTGTTGGTTCGAAGTGA-cttgtctcatttttcaag----cCTT----------------------------------------------------CTTTGCCATCTTTCTCTAGTTTCTCAAATGTAAAACATGATGGAAACCGAtctctgtttggctcacttttctgctc--tttcttccttttttgctca----tcttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  220854 331 -   375229 ----------aatctatgAAAGCGTTTATC----TCTGCCACAAAGAAGGCAAAGA---------AAGAGAACAAGAAAAGATGTGAAATCCCGAGTTGCTT----------TACCAAACATGCACAAAAGGAGCAAG---AAAAACCAACGACAACGGATGGATGGCCAGAGCGCGTTTCGTTTGTTCGAAGCTG-CTTGTCTCAATTTTCCAGAAGGttttctcctcttcgtttttttccttttttttcctgctcttcttcttttttccatctctttcccatctttctctcgcttcttAGATAGAAGAAGCG-CAGTGAACGATCTCCATTTGGCTCCttttt--------ttctccctttttttGCTCA----TCTTT
i caeJap4.Scaffold17084 C 0 I 150

a score=20716.000000
s ce10.chrX             4286061 34 + 17718866 TGAGCATTTTT--TATTGTGGGCAATGTTTATTGTT
s cb4.chrX              9391306 36 + 21540570 tctgcattttttgtgttgtgcaaaatgttttttgtt
i cb4.chrX              C 0 I 1078
s caeRem4.Crem_Contig0  1244744 32 -  4500979 tctacattttt----ttgtgcgcaatgtttcttgtt
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    16887 34 +   386604 tctgcattttt--tgttgtgctcaatgtttcttgtt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533414 34 +  4147112 tctgcattttt--tgttgtgctcaatgtttcttgtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  221185 150 -   375229 I

a score=0.000000
s ce10.chrX             4286095 7 + 17718866 AGTTTTT
e caePb3.Scfld02_0      2533448 0 +  4147112 C
e caeJap4.Scaffold17084  221185 150 -   375229 I
e cb4.chrX              9391342 1078 + 21540570 I
e caeSp111.Scaffold622    16921 0 +   386604 C
e caeRem4.Crem_Contig0  1244776 7 -  4500979 I

a score=-4942.000000
s ce10.chrX             4286102 100 + 17718866 CAATGATCTCAAAGTTACCATTTTATTTCTATTTTTAGTGTTTTAGTTTTTTTAA--------TGCGttttttaaac--tattaaactaatatt--------ttttaaatatCGAA---------CT
s caeRem4.Crem_Contig0  1244783  76 -  4500979 ----------------------------------------tcttgacttGTGAAAGAAATCATTtcggtttgaaaatttccttcAACTAATTTTACAAGTCGTTTAGTTTACCGGA-----------
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0      2533448  70 +  4147112 ---------------------------tctttttt-----tttcaacttgcgGAAaga-----tttggttttgaaat----------agatttt--------tttcttctgacgGAAAATAATGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  221185 150 -   375229 I
e cb4.chrX              9391342 1078 + 21540570 I
e caeSp111.Scaffold622    16921   0 +   386604 C

a score=-44731.000000
s ce10.chrX             4286202 403 + 17718866 -----TCTTATTTTTGTAAGTTTGCATTTTTCAGCAAGGCTTTCAAAATTAATCTACTTGGTTTGAATGTGTGATCATATTTCATAGTAAAACACTTGGAATGAGCGTTAGATTTTTTTAAATTGTCAGTAAAAATGCTTGTATATTGACTGTAAATGAGACAATTTTTTAAAAAAATGTTTCGGAGTTCTACTACATATGATTTCCCAG---TCGACAGAACCCAACGTTTA------------AAGTTAATACACAGCTCCACGATTGAGTTGGAAAAATTGGAAATATGAAATTTTGGTGTTTTGTGAACTCTTCAACTATTTTATAGAAATGAGGAATTTCTAC-----TGTCGACGTTTCAAAAAAATTTCTGCGACTAAATTTTT-TAAAAGTGGAGACAAACCTACTCAGACATGTGCTTTT
s caeRem4.Crem_Contig0  1244859 212 -  4500979 GGAATTGACATTTAACTAAATCTG---------------CTGA-AACAT-----TACAAGGTGATCAaaga-----------------------------------ttcagattttgaaac--------ttcataTTATT---------------ATCAGAAAAT---CCGGGGAAAAAACTTAGAGTT----TACGTACGTAATCCAAA---TTAATTTTACTGAA------------------CACCTAATG---------ATCtctgaagtttaaaa----aaaa---------------------------------------------ataaaaaa------------ggttgac---tcgaaaaaacaagtgagtctctcttctct-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    16921 214 +   386604 --------------------tcttttttt--------gactcGCGACAT-----GATTTGGTTTTGACATG---------------------------------------GATTTCTTTGG-----------------------------------------AAT-------AGA------TCCCGATT----TAgcagttgttttttga---tcggtcttaatcaa--ttt-------------tatttagaa---------aaaatttaaatggAAGA----GCAGTATCAAATCTTT-TGTTAGGCTGGCTTTTTGTTAGGC--ATTATCAAAAGAAGc-----------gattgat--ttcaaaaaaaaatagcaaTTTGCACTTTT--------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533518 282 +  4147112 -----TTATGTTCAA--AAGTCTGTCATT----------CTGACAAAAG-----AACTTTGATGCTACCGGT----------------------------------CTCAGACTTTTATGG--------TGAACTAGTtt---------------aataaataat-------aaaatattttcagaatt----ttgttggagctttcaaaaacttcgtATTACTCAAGGCTTAAAACGCtcaaaataacaaata---------aatattcaagTCCAGAA----GAGGTTTTCATTCCTCACGTTTTACAG--TTTATGAAAGACTTGTTCTGATACAAAActgatgttttttgagaaac--ttcgaaaagatttgaaaatctgaac--tt--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  221185 150 -   375229 I
e cb4.chrX              9391342 1078 + 21540570 I

a score=704.000000
s ce10.chrX             4286605 3 + 17718866 CGA
s cb4.chrX              9392420 3 + 21540570 caa
i cb4.chrX              I 1078 C 0
s caeRem4.Crem_Contig0  1245071 3 -  4500979 cga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    17135 3 +   386604 TCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533800 3 +  4147112 tAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  221185 150 -   375229 I

a score=127708.000000
s ce10.chrX             4286608 484 + 17718866  
s cb4.chrX              9392423 482 + 21540570  
i cb4.chrX              C 0 I 79
s caeRem4.Crem_Contig0  1245074 442 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    17138 488 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2533803 494 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  221335 485 -   375229  
i caeJap4.Scaffold17084 I 150 C 0

a score=-82.000000
s ce10.chrX             4287092 9 + 17718866 ATTTCCTTT
s caeSp111.Scaffold622    17626 9 +   386604 acaagtttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2534297 9 +  4147112 aacaagttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  221820 9 -   375229 TTTTGCTTT
i caeJap4.Scaffold17084 C 0 I 42
e cb4.chrX              9392905 79 + 21540570 I
e caeRem4.Crem_Contig0  1245516 0 -  4500979 C

a score=-8364.000000
s ce10.chrX             4287101 50 + 17718866 TTGGAACATTTGACTTTAAAGGAGGAGTAACGGTTCTGTGTGGTTTCAAA-------
s caeRem4.Crem_Contig0  1245516 10 -  4500979 -------ACTTGC--TTAA--------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    17635 50 +   386604 tcaaaatactcgA--ATACAAGAGCCGTGA-----CCATGTTAGTGTGAGTGGTCCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2534306 15 +  4147112 t-----tgttcAG--TTACAAG-----------------------------------
i caePb3.Scfld02_0      C 0 I 77
e caeJap4.Scaffold17084  221829 42 -   375229 I
e cb4.chrX              9392905 79 + 21540570 I

a score=20.000000
s ce10.chrX             4287151 7 + 17718866 TCAACGG
s caeRem4.Crem_Contig0  1245526 7 -  4500979 ACAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2534321 77 +  4147112 I
e caeJap4.Scaffold17084  221829 42 -   375229 I
e cb4.chrX              9392905 79 + 21540570 I
e caeSp111.Scaffold622    17685 0 +   386604 C

a score=-3872.000000
s ce10.chrX             4287158 29 + 17718866 AAATGTTTTATG---GTGATTACACATTAAAA-
s caeRem4.Crem_Contig0  1245533 29 -  4500979 TTTTGCTATTTG---TTGCTTACACGTTTGAG-
i caeRem4.Crem_Contig0  C 0 I 68
s caeSp111.Scaffold622    17685 16 +   386604 --------TTTGGGCCGATTCACA---------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  221871 30 -   375229 atttcttttgtg---gtttttccgacttttatt
i caeJap4.Scaffold17084 I 42 C 0
e caePb3.Scfld02_0      2534321 77 +  4147112 I
e cb4.chrX              9392905 79 + 21540570 I

a score=-423.000000
s ce10.chrX             4287187 5 + 17718866 -AACGT
s caeJap4.Scaffold17084  221901 5 -   375229 caatt-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2534321 77 +  4147112 I
e cb4.chrX              9392905 79 + 21540570 I
e caeSp111.Scaffold622    17701 0 +   386604 C
e caeRem4.Crem_Contig0  1245562 68 -  4500979 I

a score=-2090.000000
s ce10.chrX             4287192 60 + 17718866 AATttttgaatataaaaacacttttgacgcacttttgagaagtttcattacaaaa--tttgt
s cb4.chrX              9392984 52 + 21540570 AATTCTCCA----------Acttttggttcactttttatatgttcctttccattttatcttc
i cb4.chrX              I 79 I 1
s caeSp111.Scaffold622    17701 28 +   386604 -------------------ACTTTTGGCTCACTCCTTGAATGTtc---------------gc
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  221906 55 -   375229 tcttttttaataaaattagtttttcggattttttttggtgtgtttcttcttttgt-------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2534321 77 +  4147112 I
e caeRem4.Crem_Contig0  1245562 68 -  4500979 I

a score=-31880.000000
s ce10.chrX             4287252 114 + 17718866 tactttcagcacatttcggtcctaaacgtccgaaacacccctaagccgttactccttct--ttaaAAAGAAACTAAATTCAATATT-------------------------------------------CAAAAGATCAATAT---------ATTTTTTCTTCTTATT
s cb4.chrX              9393037  56 + 21540570 tttttctaaca-------------------------------aattcaatttcatttcttttcggatg--------atttcatttt-------------------------------------------gaaaaaaaa------------------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1245630  84 -  4500979 cacttttcacatttt--------------------------ttgttctttctcgTTTCTTGTTCGAAGAAgcacaaattcaatttt-------------------------------------------tgaaccaaaccgtt---------ttttcttctt------
i caeRem4.Crem_Contig0  I 68 C 0
s caeSp111.Scaffold622    17729  63 +   386604 --------------------------------------------ttctttctcttttctcttcaaaa---------attcaatttt-------------------------------------------gagagaaaaaccgt---------ttttttccttcttatt
i caeSp111.Scaffold622  C 0 I 30
s caePb3.Scfld02_0      2534398  88 +  4147112 ------------------------------------------------ttcctttttc---tcacaa---------attcaatttttgaactgaaccgttattttttcttttattcaaaacgaaaaaaaaaaagaaaaaaag--------------------ctaaCC
i caePb3.Scfld02_0      I 77 I 1
s caeJap4.Scaffold17084  221961  54 -   375229 --------------------------------------------------ttcttttagttttaaga---------atttaaaaac-------------------------------------------agagaaaaagaaaTCGGATAGAGATAT------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-5159.000000
s ce10.chrX             4287366 23 + 17718866 TTTTTCTCA------------CATTTTCATTGGAT
s cb4.chrX              9393093 27 + 21540570 --------aatagaaaaaaactagcCAAATCGGCC
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1245714 35 -  4500979 ttttattcaaaagaaaaaaactagccGAATCGGAT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2534487  8 +  4147112 ---------------------------AATCGGAT
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold17084  222015  2 -   375229 ----------------------------AT-----
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    17792 30 +   386604 I

a score=176921.000000
s ce10.chrX             4287389 253 + 17718866 GAATGTGAAAACCCATAAATTTGAAGGGTGAAAAAGATAAATTGGTTTTGTGTGGGATATCTCTCTTG--AAATCC--AT-------TTTTCTCTTC-TTCTTC-TATCCCAAA--CTATTTTATGTGATTTCAAAAGGAATTCCAAAAGCGAAATTCGTGTGTTTTTTTTCAGAGTTTCCCGTGCTCACTACGACGAGGACGAACTCGCGTCGGCTGCAAACATGAGTCTCGTTGCTGAAGGACATTTCAGGTTGGGC-------------------AATTGAAAA
s cb4.chrX              9393121 267 + 21540570 GTATGTGAAAACCCATAAATTTGAAGGGCGaaaaagataaattggctctgGAGAAGGGA-----CTCCAAAAGTCC--AGAAGGATATCTTCTTCTC-CTGCTCGTTTCGCAAAACCGATTGCATGTGA-TTCGGAAG-------AATAatgagttt----ttctttttttcagagtttcccgTGCTCACTACGACGAGGACGAACTACAATCCGCTGCAAACATGAGTCTCGTTGCAGAAGGACATTTCAGGTcaggaaaaacagaaaagggattcacgaaaaaaa
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1245750 234 -  4500979 GAATGTGAAAACCCATAAATTTGAAGGGCGAAAAAGATAAATTGGTTTTG--------------CTTC--AAGTCC--AG-CGgatatcttcttttctttgctCGTATCTCAAA--CAATTTCATGTGA-TTCAGAAG-------AATAATgag-----------ttttttcagagtttcccGTGCCCACTACGACGAGGACGAACTTATATCCGCCGCAAACATGAGTCTCGTGGCTGAAGGACATTTCAGGTTAG-------------GGCGTCTACTCAAAAAT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    17822 236 +   386604 GAATGTGAAAACCCATAAATTTGAAGGGcgaaaaagataaattgGTTTTG--------------CCTC--GAGTCCAGAG-AGGatatcttctttct-ctctccgtATCTCAAA--CAATTTGATgtga-ttcaaaag-------aataatgag------------tttttcagagtttccCGTGCTCACTACGACGAGGACGAACTGCAATCGGCTGCAAACATGAGTCTCGTAGCTGAAGGACATTTCAGGTCAGGG-----------CGGGGTTACAAGAGAAT
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2534496 231 +  4147112 GAATGTGAAAACCCATAAATTTGAAGGGCGAAAAAGATAAATTGGTTTTG--------------CCTC--GAGTCC--AG-AGGatatcttctcttt-tctcccgtatctcaaa--caattttatgtga-ttcagaag-------aataatgag------------tttttcagagtttcccGTGCTCACTACGACGAGGACGAATTTCTATCCGCGGCAAACATGAGTCTCGTGGCTGAAGGACATTTCAGGTTAGGC-----------GGAAG---AAATGGAAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  222017 219 -   375229 AAATTCGAAACGCCATAAACTTGAAAAGCGAAAAAGATAAATTGGTTTCG--------------CTCC----GTCC--AG---CATATCTT-TCTCG-TTTCTCATCTCTCAAAA-CGATTTTATGTGA-ATTAGAAG-------AATAATGAG---------GTTTTTTCCAGAGTTTCCCGTGCTCACTACGACGAAGACGAACTGATCTCAGCCGCAAACATGAGTCTCGTCGCAGAAGGACATTTCAGGT------------------------ATTAAAAA-
i caeJap4.Scaffold17084 C 0 I 2816

a score=-2911.000000
s ce10.chrX             4287642 260 + 17718866 T------------------TGAA-------------------AGTGCAATTTGGCTCTA----------------GAACA--------------------TTCAAAAAACCATGCAAATTTACTTCATAACGATTGC-CCCAGCTATAAAGCAAAATATCT-------------------ATAACCCAC----TACAA------TTTTCCACA--------------AA--TT--------------------------CAAGCACAA---TTCA------TTTCAATTTCCATGGCAACTGTGTATCTTATTG-AACCCT--CTTTTACGATTTCCGTAACCAGGAGAGACAACACAAAGTG-TCCCCTTTTCTCTCTTTCATTCAGTTTTA----AGCCCTGATGTTTTTTCTCTTTTCC-
s cb4.chrX              9393388 319 + 21540570 gaaaaccggagaaaaGACCAGGGACAATTATAAATAAAGCT-GGTGTAATCTGACTCCATTCATAAGTACTACTTGAGCAGAATAATTAGAACCTTTTTATGGACCTATTCATAAAAAG-----TGGAACTTGTCCT-TTTCCCGGTATGAAAGGATCTTT-------------------CATAccaaa----agtat------ttttcaaat---------tgttgaa------------------------------aaaaaagaacgctTGA------CTAAGATTCCCATAGTGACATCGTTTCCcatatcaacatt--tttttacgATTTGCGTAACCTCGAGAAACCGCCTCGgatgctcttctttttttactttctctcatttttctt--ctcctcg-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1245984 337 -  4500979 G------------------AGGGAGTTGTAAAAATAGA----AGTGTAATTGGACTCCAATTGAGAG---TCATTAAACAAAAGCATATG-----------ggaaaaagtcataaaaa-------caaaatggtTTA-TTAGC--ATACATAAATATTCTC-------------------AATACCATAGAGTGATAT------ATTCCGATTATTCGCCTATTCTGAA--TTCAGATAGAATGATTCCATACTCATTCAAAGAAGCAcgttaaa------attgaatttctatgGTAACAATGAATCCCATA--AACTCT--CTTTTACGATTTCCGTAACCAGGAGAGACAGCTTAGGATGTccccttttttcatcttccattcagttttctt--tcctttgat-tcttcttccttttgcc
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold622    18058 315 +   386604 A------------------TGAGCAAATTATGAAT-------TGTGAAATTCGACTCCGATT-ATGG--------GAGTTGAAccat----------------aaaaagaaatcgaaaag---tggATAATTATAGT-CAAGCTTAGAAGTCATAAAATCT-------------------AACAGCACA----AAACC------TTTTCTACT-----TTTATTTCcaatcttctcttccttcgttttcagtttca---aaataaaaa---tcga------attaaAAATCCATAGAAACGTTGTATCCCATC--AACCCCtttttttACGATTTCCGTAACCAAGAGAAACAGCCCAGGATG--TCTctttttcgcttttcatttcattttctttcactttcaa---tttgcctttGGTGT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2534727 363 +  4147112 G------------------GGAG---ATTATGAATAATTGAGGGTGTAATTTGACTCCGTTTGAAAG--------GAATAAAACCAggaa------tatatgaaaaaagtcataaaaaga---GGGATAAGTATCGTACCTGCCCATAAAACCTAGGTTTTCTATTCACccgtttttgaagaaaacatt----gaaccagtcttttttctttt-----tcctttttcaatcttcaatttcaaagagtaaatttttg---aaaaaaaaa---ttgaaaaaagatgagattCCTATGGAAACATTGAATCCCATA--AACCTTCACTTTTACGATTTCCGTAACCAGGAGAAACAGCCCAGGATG-CTCCCTTTTTTgcctttcatttcattttctt--agcTTCAGT-TTTTGCCTCTTGTGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  222236 2816 -   375229 I

a score=-4181.000000
s ce10.chrX             4287902 16 + 17718866 AGAATAAATTTCGAAC------
s cb4.chrX              9393707 17 + 21540570 -----aAATTGCGGTTTTTGAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    18373  2 +   386604 ------------------TG--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2535090  2 +  4147112 ------------------TG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e caeRem4.Crem_Contig0  1246321 10 -  4500979 I

a score=10839.000000
s ce10.chrX             4287918 22 + 17718866 AAAAATCCCGTCTGGGAAAGTG
s cb4.chrX              9393724 19 + 21540570 ---AATCCGGCCtgagaaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1246331 22 -  4500979 gaaaatctTCCCTGGGAAAGCG
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold622    18375 21 +   386604 -AAAATCCCGCCTGAGAAAACA
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2535092 21 +  4147112 -AAAATCCCGCCTGAGAAAACG
i caePb3.Scfld02_0      C 0 I 1011
e caeJap4.Scaffold17084  222236 2816 -   375229 I

a score=-12506.000000
s ce10.chrX             4287940  76 + 17718866 ---------TTAAAA--CCCT----GATGTAGA---------------AGATGAACAC--TCTGTAGTTTTTT--------GTTTTATTCAGAATACTGTTCTGTTTATGAATTTT------------------
s cb4.chrX              9393743  91 + 21540570 tagataaTCCTTCAGCAAGTTTTGAGACATAGT---------------AGTTGAAcacattcgaaaattcgtt--------gaggagtctagaaaaaagttttg--aatgaatttt------------------
i cb4.chrX              C 0 I 1674
s caeRem4.Crem_Contig0  1246353  92 -  4500979 TAAAGAAGGTTGAAG--AGTT----GTCACAG----------------ACTTGAACACATtaacacgttttttttctcccaattGAACCAACTAATATCTTGTT--AGTTCAGTTC------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    18399 116 +   386604 ---ATAAACCCAAAAT-GGTT----AACAGAACGTTGTCTTCTCTCCAATTTGTGGttcttcataattttttt--------tagagttttagagcaaagtttta--gaatctgtttgcttttcatccgtttttt
i caeSp111.Scaffold622  I 3 C 0
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I

a score=-1543.000000
s ce10.chrX             4288016 115 + 17718866 ------------------GAACTAAAAAAACCAGTTCAGAGTTTAACGGA--TATAGATTT--CAGTTGAAATTTGAGATGTTGCTCATTTTAGTACCAACTTCATGACGTTTTTTGGT-AGTCTATCAAATTTCTAT---------------------------------
s caeRem4.Crem_Contig0  1246445 161 -  4500979 TACTCGATATCCTTTTTTGGGTCGAAG----TAGTTCAAG---TAGGAGA-ATATAGTTTTACTTGTTGAAATTAGAGAAGat-ttattttcgg-aaaaaaaagatgacgtGATGACGTCAGTTGGAATGAGTTCTATTTCAGAGTCGGGAGATGTGTATTGAGTTACTTT
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold622    18515 133 +   386604 ----GCATTCCCGCTTTTGAGTCAAAG----TAGTTCAAG---TAGTGGAGGGATAGTTTTACAGAATGAAATAAGAGAACAT-CTAATTTTAG--AAGGCTGTATGACGTGATGACGT-ATTTGCAATGACTCTTATT--------GAGCGAtgt---------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I

a score=96.000000
s ce10.chrX             4288131 13 + 17718866 AAAAA-----------AAGAAATG
s caeSp111.Scaffold622    18648 24 +   386604 gaaaattagttttctgaaaagatg
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeRem4.Crem_Contig0  1246606 33 -  4500979 I

a score=-1613.000000
s ce10.chrX             4288144 26 + 17718866 TTCAAGTTTGCTGGAAAAATAAGAAA-----
s caeRem4.Crem_Contig0  1246639 25 -  4500979 ------ttcatattttcagtataGCAACCGG
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold622    18672 26 +   386604 TAAAGGATTGTAGTCTAATTATGAAA-----
i caeSp111.Scaffold622  C 0 I 327
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I

a score=666.000000
s ce10.chrX             4288170 136 + 17718866 AGGTGAAACAACAAATAAGCAGTTTTAACTATTTAGGTATGTCTAATGAATAA-AAATTCTCACTAGCTTTC--AATAACATAT----TCACTACTTTTAAGAGAAAATTTAGCAA----AATTTTAGATTTCTAGTCACTAATTTT
s caeRem4.Crem_Contig0  1246664 143 -  4500979 GTATGAAaccatgaaaaa--atttttggtttttgacgTTTGGAGGAGACATAATAAAATATTATTGTGATTCGTAATAAGACTTTGTATTAttatttgtagaaaaaaaatttgccatTGTGGTTTTGTACTTct--tctacaatttt
i caeRem4.Crem_Contig0  C 0 I 280
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeSp111.Scaffold622    18698 327 +   386604 I

a score=0.000000
s ce10.chrX             4288306 98 + 17718866 gcaaatgagtgacccagttttggcattttgacgttttccgactattttagttagttttttttttttaaatcttatttgatATTATATTTTTATAATAT
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeSp111.Scaffold622    18698 327 +   386604 I
e caeRem4.Crem_Contig0  1246807 280 -  4500979 I

a score=473.000000
s ce10.chrX             4288404 27 + 17718866 GAATTTGACT--------------------AAAACTAATCATAAGAC
s caeSp111.Scaffold622    19025 47 +   386604 GAAtttgattctcttttcccttttctctcaaaagtTCACAATGAGAC
i caeSp111.Scaffold622  I 327 I 47
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeRem4.Crem_Contig0  1246807 280 -  4500979 I

a score=0.000000
s ce10.chrX             4288431 40 + 17718866 CAAGAAACTGCACCTCTTCGTGCAACTTCTACAAGTTTTG
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeSp111.Scaffold622    19072 47 +   386604 I
e caeRem4.Crem_Contig0  1246807 280 -  4500979 I

a score=-151.000000
s ce10.chrX             4288471 14 + 17718866 GTTTGCGGTTTCCG
s caeRem4.Crem_Contig0  1247087 14 -  4500979 gtgcATGATCGCGC
i caeRem4.Crem_Contig0  I 280 C 0
e caePb3.Scfld02_0      2535113 1011 +  4147112 I
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I
e caeSp111.Scaffold622    19072 47 +   386604 I

a score=4905.000000
s ce10.chrX             4288485 15 + 17718866 TGAACTTTTTGAGTA
s caeRem4.Crem_Contig0  1247101 15 -  4500979 TGAACTAAGTTAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    19119 15 +   386604 TGAACTTAGTTAGTG
i caeSp111.Scaffold622  I 47 C 0
s caePb3.Scfld02_0      2536124 15 +  4147112 TGAACTTAGTCGGTG
i caePb3.Scfld02_0      I 1011 C 0
e caeJap4.Scaffold17084  222236 2816 -   375229 I
e cb4.chrX              9393834 1674 + 21540570 I

a score=693.000000
s ce10.chrX             4288500 32 + 17718866 TCTTCCGCAAAATCTTC--------TCTCTAATTTTCTAT--------
s caeRem4.Crem_Contig0  1247116 40 -  4500979 CCTTCCAAAAaactcctccttcttctccctAATTCTGGAT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    19134 24 +   386604 CCTTCAAAAGAGACTTC----------------TTTGGAT--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2536139 30 +  4147112 CCTTCCAAAAGTCCACC----------CCTAATTCTGTAT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  225052 38 -   375229 ttttttgcaaactcttC----------CCtatttcagtgtttcagtat
i caeJap4.Scaffold17084 I 2816 C 0
e cb4.chrX              9393834 1674 + 21540570 I

a score=72908.000000
s ce10.chrX             4288532 168 + 17718866 ATCATCATGTAATTCTCATCTGTCATGCACCCATCG---TTGG-----------------GCCTTTTTTATGTGCAAAAGAGGAGGAGGAGGACAA---TCT-TGTACTG----GCTTTCTAGAA----TATGCAATAAATGCACATAAAAGCTGAGGTTCTG---CCTGC----TTCTTCCAAACGAT---GCTCTCTTTGATGT----GCCC
s cb4.chrX              9395508 180 + 21540570 ATCATCATGCGATTCTCATCTGCCATGCACCCATCG---TTGGAAGCTAGAGGAGACCTCGTCTTCTTTATGTGCAAAAAACGA----AGGGACAA---TCT-TGTATTGGCCCCATTTCTAGAATATGTATGCAAAAAATGCA--------CTGAGGtt------ccctc----ttttttcgaaCGATGTGG-Ctcttttcattt----ctct
i cb4.chrX              I 1674 C 0
s caeRem4.Crem_Contig0  1247156 173 -  4500979 ATCATCATGCAATTCTCATCTGGCATGCACCCATCG---TTGG-----CGGGGGGACCTCGTCCTTTTTATGTGCAAAA---GA----GAGGACAT---TCT-TGTGCTG----CTTTTCTAGAA----TATGCAATAAATGCACATAAATGCTGAGGTT------CTCCCGCTTCTTTTCCGAACGAT---G-CCATTTTGGTTT----GCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    19158 176 +   386604 ATCATCATGTAATTCTCATCTGCCACGCACTCTCCAGCTTTGG----------ACGC----CTTTTTATgtgttgaaaaaagga----gaggaCAT---TCT-TGTACTG----GCATTCTAGAA----TATGCAATAAATGCACATAAAGGCTGAGGTTTCGGGCCCCTC----TTCTTTTGAACGAT---G-CCATTTCGGTGTGGTGTGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2536169 170 +  4147112 ATCATCATGAAATTCTCATCTTCTATGCACCCCTCG---TTGA----------GCCCTCCGTTTTTTATGTGTGTAAAAA--GA----GAGGACAT---TCTCTGTACTG----CCTTTCTAGAA----TATGCAATAAATGCACATAAAAGCTGAGGTTTTG---CTGCT----TCTTTTTGAACGAT---GCCCATTTTGGTGC----TGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  225090 157 -   375229 ttcagtatttcaatttca------atgcAAGTATCTCATTTTg--------------------ttctttgtttttcaaaagtcA----GGGCACAAGAGGCT-TGTACTG----GTCCTCTCGAA----TATGCAAT-AACGCGCGTAAAAACTGAGATTC-----TCCAC----TTTTGCCAAACGAC---G-TCATTCAGACCT----GCCC
i caeJap4.Scaffold17084 C 0 I 130

a score=-700.000000
s ce10.chrX             4288700 13 + 17718866 GTTTAAGTTTTTT
s cb4.chrX              9395688 12 + 21540570 tttcaatttctt-
i cb4.chrX              C 0 I 258
s caeRem4.Crem_Contig0  1247329 13 -  4500979 GTGCGAGTGCCTC
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    19334 13 +   386604 GGATAtgttcttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2536339 13 +  4147112 TTTTCCGTTGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  225247 130 -   375229 I

a score=-1107.000000
s ce10.chrX             4288713 1 + 17718866 T-
s caeRem4.Crem_Contig0  1247353 1 -  4500979 -G
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622    19347 1 +   386604 t-
i caeSp111.Scaffold622  C 0 I 205
s caePb3.Scfld02_0      2536352 1 +  4147112 T-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  225247 130 -   375229 I
e cb4.chrX              9395700 258 + 21540570 I

a score=1160.000000
s ce10.chrX             4288714 18 + 17718866 -TGCAGTCTAGAAATGTCA
s caeRem4.Crem_Contig0  1247354 17 -  4500979 -TTCCGT-TCAAAATGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2536353 18 +  4147112 TTTCCAT-TAGAAAGGCCA
i caePb3.Scfld02_0      C 0 I 353
e caeJap4.Scaffold17084  225247 130 -   375229 I
e cb4.chrX              9395700 258 + 21540570 I
e caeSp111.Scaffold622    19348 205 +   386604 I

a score=822.000000
s ce10.chrX             4288732 28 + 17718866 AATTCGATTATTTTTGTGTAGGAGGTTC
s caeRem4.Crem_Contig0  1247371 26 -  4500979 AAGTCG--TTTTTTAGTGGGGGCGGTTC
i caeRem4.Crem_Contig0  C 0 I 235
e caePb3.Scfld02_0      2536371 353 +  4147112 I
e caeJap4.Scaffold17084  225247 130 -   375229 I
e cb4.chrX              9395700 258 + 21540570 I
e caeSp111.Scaffold622    19348 205 +   386604 I

a score=0.000000
s ce10.chrX             4288760 690 + 17718866  
e caePb3.Scfld02_0      2536371 353 +  4147112 I
e caeJap4.Scaffold17084  225247 130 -   375229 I
e cb4.chrX              9395700 258 + 21540570 I
e caeSp111.Scaffold622    19348 205 +   386604 I
e caeRem4.Crem_Contig0  1247397 235 -  4500979 I

a score=91.000000
s ce10.chrX             4289450 1 + 17718866 T
s caeJap4.Scaffold17084  225377 1 -   375229 T
i caeJap4.Scaffold17084 I 130 C 0
e caePb3.Scfld02_0      2536371 353 +  4147112 I
e cb4.chrX              9395700 258 + 21540570 I
e caeSp111.Scaffold622    19348 205 +   386604 I
e caeRem4.Crem_Contig0  1247397 235 -  4500979 I

a score=58.000000
s ce10.chrX             4289451 2 + 17718866 AT
s caePb3.Scfld02_0      2536724 2 +  4147112 AC
i caePb3.Scfld02_0      I 353 C 0
s caeJap4.Scaffold17084  225378 2 -   375229 GT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9395700 258 + 21540570 I
e caeSp111.Scaffold622    19348 205 +   386604 I
e caeRem4.Crem_Contig0  1247397 235 -  4500979 I

a score=-1107.000000
s ce10.chrX             4289453 1 + 17718866 -T
s cb4.chrX              9395958 1 + 21540570 -t
i cb4.chrX              I 258 C 0
s caePb3.Scfld02_0      2536726 1 +  4147112 -T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  225380 1 -   375229 G-
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    19348 205 +   386604 I
e caeRem4.Crem_Contig0  1247397 235 -  4500979 I

a score=387106.000000
s ce10.chrX             4289454 431 + 17718866 TTTCAGAGGCATGAAGGAGCTTCTCTCCACCATGGATCTTGACACGGATGCCAACACCATCCCTGAGTTGAAAGAGAGAGCTCACATGCTATGCGCAAGATTCCTTGGCGGAGCATGGAAAACTGTTCCATTGGAGCATTTGAGAATCAGTCGCATCAAGTGAGTT---CATGATCCTAAA--------------GCCTATTAAAATTATTGAACAAATTAAGGGGTGGAATGAGCAACATGTTATTCTTATGCCGACTTTCGGAAGTCTATCCACCAATTCGTAACGAACCAAACAAGGTTCTGCTTCGTGTCTACTTCAATCCAGAGACTGAGAGTCATCTCGTTGCGGAATCTGTCATTTTCACTCTGCTCTCTGAGCGTCATTTGGGTCCCAAGCTTTATGGAATTTTCAGTGGTGGACGTCTAGAAGAGTATATACCTGTGAG
s cb4.chrX              9395959 442 + 21540570 ttccaGAGGCATGAAGGAGTTACTCTCCAGCATGGACCTTGACACCGACGCAAATACTATCCCGGAGCTCAAAGAACGTGCTCATATGCTCTGCGCTCGTTTCCTGGGCGGAGCATGGAAAACTGTTCCATTGGAGCATTTGCGTATCAGCCGTATTAAGTGAGTT---TCTAATTAGAACCACCACTGAAATCCCCTCAACTAAACTTTAA---GATTTTAGGGGTGGAATGAGCAATATGCTCTTCTTGTGCCGATTGTCGGAGGTCTATCCACCGATTCGCAACGAGCCGAACAAGGTGCTTCTCCGTGTCTACTTCAACCCGGAGACTGAAAGCCACCTCGTCGCCGAGTCTGTCATTTTCACGCTTCTCTCCGAGCGCCACTTGGGTCCAAAACTTTATGGCATTTTCAGTGGCGGACGTTTGGAGGAGTACATTCCGGTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1247632 428 -  4500979 TTACAGAGGCATGAAGGAGCTTCTCTCCACCATGGATCTTGACACGGATGCTAATACCATTCCGGAGTTAAAGGAACGTGCCCATATGCTCTGCGCTAGATTCCTTGGCGGAGCATGGAAAACCGTTCCATTGGAGCACTTGAGAATTAGTCGCATcaagtaagtt---tttatttggaTATA----------CGCGTTAATCAAACTT-------ATCTCAGGGGTGGAATGAGCAACATGCTCTTCCTTTGTCGTCTCTCTGAAGTGTATCCACCAATTCGCAATGAACCTAACAAGGTACTTCTACGCGTGTATTTCAATCCGGAGACCGAGAGTCACCTTGTCGCGGAATCTGTCATTTTCACTCTTCTCTCCGAGCGTCACTTGGGACCAAAGCTTTATGGCATCTTCAGTGGAGGGCGTCTCGAGGAATACATTCCGGTTAG
i caeRem4.Crem_Contig0  I 235 C 0
s caeSp111.Scaffold622    19553 426 +   386604 TTGCAGAGGTATGAAGGAGCTTCTCTCCACCATGGATCTTGACACGGATGCCAACACCATTCCGGagttgaaagagagagcTCACATGCTCTGTGCAAGATTCCTTGGCGGAGCATGGAAAACTGTTCCACTCGAGCATTTGAGAATCAGTCGTATCAAGTGAGTA---TATAACTGAA----------------TTCTATCTCTATCCTTA---TTTCCCAGAGGTGGAATGAGCAACATGCTCTTTTTGTGTCGTCTTTCTGAAGTCTATCCACCAATCCGTAACGAACCCAACAAGGTGCTTCTCCGTGTCTATTTCAATCCGGAAACTGAGAGTCACCTTGTCGCCGAATCTGTCATTTTCACTCTTCTTTCTGAGCGTCATTTGGGACCAAAACTTTATGGCATTTTCAGTGGTGGACGTTTGGAAGAATACATTCCGGTTGG
i caeSp111.Scaffold622  I 205 C 0
s caePb3.Scfld02_0      2536727 429 +  4147112 TTCCAGGGGGATGAAGGAGTTGCTCTCCACCATGGATCTTGATACGGATGCCAACACCATTCCGGAGTTGAAGGAGCGTGCTCATATGCTCTGTGCTCGTTTCCTTGGAGGAGCCTGGAAGACTGTTCCATTGGAGCATCTGCGCATCAGCCGCATCAAGTGAGT----TATACCCGAGAA------------ATGTCCATCTTAACATTCA---TTGTTAAGGGGTGGAATGAGCAACATGCTCTTTCTGTGCCGTCTCTCGGAGGTCTATCCACCAATCCGTAATGAGCCAAACAAGGTGCTTCTCCGGGTTTACTTCAATCCGGAGACTGAAAGCCACCTTGTGGCTGAATCTGTCATCTTCACTCTTCTCTCGGAGCGTCATTTGGGACCGAAACTTTATGGCATCTTCAGCGGTGGACGTTTGGAGGAGTACATTCCGGTGAG
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17084  225381 437 -   375229 TTTCAGAGGTATGAAGGAGCTTTTGTCCACAATGGATCTCGATACGGACGCAAATACCATTCCGGAGCTGAAGGAGCGAGCTCACATGCTTTGTGCAAGGTTTCTTGGAGGAGCATGGAAGACAGTGCCGCTTGAGCATTTGAGAATTAGTCGTATTAAGtaggttttgttttgttgacaGTA----------TTGTGTACATGGAATTCTGTTATTTTATAGAGGAGGAATGAGCAACATGCTCTTCCTGTGCCGCCTTTCGGAAGTCTATCCGCCAATTCGAAATGAGCCAAATAAAGTGCTCCTTCGCGTGTACTTCAATCCTGAAACGGAAAGCCATCTTGTCGCCGAGTCCGTCATCTTCACTTTGCTCTCAGAGCGCCACTTGGGCCCGAAGCTTTATGGCATCTTTAGCGGCGGACGTCTAGAGGAATACATTCCggtag-
i caeJap4.Scaffold17084 C 0 C 0

a score=-3072.000000
s ce10.chrX             4289885 4 + 17718866 TCTA-
s cb4.chrX              9396401 2 + 21540570 --TA-
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig0  1248060 2 -  4500979 --TT-
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    19979 2 +   386604 --TT-
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17084  225818 4 -   375229 -ccaa
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2537156 38 +  4147112 I

a score=-2816.000000
s ce10.chrX             4289889 11 + 17718866 --------AGCCTTTCTGA
s caeRem4.Crem_Contig0  1248073 10 -  4500979 ---------GAAGTTTTTG
i caeRem4.Crem_Contig0  I 11 I 14
s caeSp111.Scaffold622    19982 11 +   386604 --------CGTTGTCCTAA
i caeSp111.Scaffold622  I 1 C 0
s caeJap4.Scaffold17084  225822 18 -   375229 aaaaaaaacgagtctCTG-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2537156 38 +  4147112 I
e cb4.chrX              9396403 49 + 21540570 I

a score=-6884.000000
s ce10.chrX             4289900 19 + 17718866 TGTATAAACGGAACATT--GG
s cb4.chrX              9396452 17 + 21540570 agtgAAATATCACGATT----
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig0  1248097 17 -  4500979 tcttaaatccGATAATT----
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold622    19993 19 +   386604 TATGAAGAGtcataataaa--
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17084  225840 12 -   375229 -accgaatttttc--------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2537156 38 +  4147112 I

a score=132915.000000
s ce10.chrX             4289919 143 + 17718866 ACTTCAGTCTCGCCCACTCTCTTGCCATGAAATTTCATTAGCACACATGTCTACAAAAATTGCAAAGCGCGTTGCGAAGGTTCATCAATTGGAAGTACCAATTTGGAAAGAACCCGATTATCTGTGTGAAGCTCTGCAGAGGT
s cb4.chrX              9396469 141 + 21540570 --TACAGTCTCGTCCATTGTCGTGCCACGAGATCTCGCTGTCTCACATGTCGACGAAAATAGCAAAGCGTGTTGCCAAGGTTCACCAATTGGAGGTTCCAATCTGGAAGGAGCCAGACTACTTGTGCGAGGCTCTTCAGAGGT
i cb4.chrX              C 0 I 1749
s caeRem4.Crem_Contig0  1248114 142 -  4500979 -CTCCAGTCGCGTCCGTTGTCGTGCCATGAAATTTCATTGTCTCACATGTCGACCAAAATTGCGAAACGTGTCGCTAAAGTTCATCAATTGGAAGTTCCAATCTGGAAAGAACCAGACTACTTGTGCGAGGCGTTGCAAAggt
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    20013 143 +   386604 ttttcagtcacGTCCATTGTCCTGTCACGAGATTTCTTTGTCCCATATGTCGACAAAAATTGCAAAGCGAGTTGCTAAAGTGCATCAGCTCGAAGTTCCTATTTGGAAGGAGCCAGACTATTTGTGTGAAGCACTGCAAAGGT
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2537194 143 +  4147112 ATTTTAGTCTCGTCCATTGTCGTGCCACGAGATTTCTTTGTCTCACATGTCCACCAAGATCGCCAAACGTGTGGCCAAAGTGCACCAGTTGGAAGTGCCAATCTGGAAGGAGCCGGACTACTTGTGCGAAGCTTTGCAGAGGT
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17084  225852 143 -   375229 ttttcagtcGCGTCCATTGTCATGCCATGAAATTTCCCTCTCTCACATGTCCACAAAAATTGCGAAGCGTGTGGCAAAAGTACATCAATTGGAAGTGCCGATATGGAAGGAACCTGATTATCTCTGCGAAGCATTACAGCGGT
i caeJap4.Scaffold17084 C 0 C 0

a score=-6907.000000
s ce10.chrX             4290062 29 + 17718866 TAGTAATTT------------ATATTTGATTTTTTTGAACA
s caeRem4.Crem_Contig0  1248260 17 -  4500979 tg-------------------aaatttgaaatt-----aca
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    20156 11 +   386604 TG-------------------------GAAAAT-----ACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537337 20 +  4147112 TGGTA----------------GTGTTTGAGAAT-----ACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  225995 29 -   375229 -----AATTAATTCTTAGCTGATGTTTGTCAAT-----A--
i caeJap4.Scaffold17084 C 0 I 628
e cb4.chrX              9396610 1749 + 21540570 I

a score=-10101.000000
s ce10.chrX             4290091  9 + 17718866 A-------------------------AATTC---------GAA-----------------
s caeRem4.Crem_Contig0  1248277 44 -  4500979 C-------AAACTCGCAAAATATAGTAGTAC---------GACTAGCATGAACCATCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20167 24 +   386604 A-------------------------GATTC---------ATATTTCATCAGGCATCC--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537357 57 +  4147112 ACAGCAAAGCACACACCAAAGAGTGTTATTCTCTAGTGAAATATATtacaaaacat-g--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  226024 628 -   375229 I
e cb4.chrX              9396610 1749 + 21540570 I

a score=407290.000000
s ce10.chrX             4290100 481 + 17718866 TTTCAGGTGGCTGAAACAACTAACTGGAACTGTCGATGCGGAACATCGTTTCGACCTTCCTGAAGAGTGTGGAGTTTCCAGTGTCAATTGTCTAGACTTAGCAAGGGAGTTGGAGTTTCTGAGAGCTCATATCTCACTGAGCAAAAGCCCTGTAACATTTTGTCACAATGACTTACAAGAAGGCAATATTTTACTTCCAAAAGCTTCTTCCGGTAACATTCGTATGCCTTCGCTATCGGATGAGACTCAAGCGTTGGGTAACAGCTTATCAGCATTCAACCCAGCTGATCCTCGTCTTGTGCTCATTGATTTTGAGTATGCTAGCTACAACTACAGGTTATTCATGGCGATTTGAAA--------TTTTAAAAAAATTT----GTTTTCAGAGCATTCGATTTTGCCAATCACTTCATCGAATGGACTATTGACTACGACATTGACGAAGCTCCATTCTACAAAATTCAAACCGAGAACTTCCCCGAAAATGA
s cb4.chrX              9398359 484 + 21540570 TTTCAGATGGCTCAAACAACTCACTGGAACTGTCGCTGCCGAGCATCGCTTCGAGCTTCCAGAAGAGTGCGGAGTTTCCAGCGTCAATTGCATGGATCTAGCGCGCGAACTCGAGTTCTTGCGTGCTCACATCTCGCTCAGCAAGAGTCCAGTGACATTCTGTCACAACGACCTGCAAGAAGGTAACATTCTTCTACCAAAGGCGTCTTCTGGAAATATCCGTATGCCGTCGTTGTCGGATGAGATCCAAGCGCTTGGAAATAGCCTTTCGGCTTTCAACCCAGCCGATCCTCGTCTTGTGTTGATCGATTTTGAGTACGCCAGCTATAACTACAGGTAAAGATTTCACCTGAGACA--------CAAAATTAGGATTACTG-ATTTTCAGAGCATTCGATTTTGCCAACCATTTCATTGAATGGACCATCGACTATGATATCCAAGAGGCTCCATTCTACAAGATTCAACCGGAGAACTTCCCAGAGGATGA
i cb4.chrX              I 1749 C 0
s caeRem4.Crem_Contig0  1248321 484 -  4500979 TTTCAGATGGCTAAAACAGTTGACTGGAACTGTGTCTGGAGAGCATCGTTTTGATCTTCCTGAGGAGTGTGGTGTTTCCAGTGTCAATTGTCTGGATCTTGCTAGAGAATTGGAATTCTTGAGAGCCCATATCTCTCTCAGCAAGAGCCCAGTTACGTTCTGTCACAATGACTTGCAAGAAGGAAACATTCTTCTTCCGAAAGCTTCTTCTGGAAACATCCGCATGCCTTCGTTGTCGGACGAGACTCAGGCTTTAGGGAACAGTCTCTCTGCATTCAATCCGGCAGACCCACGTCTTGTCCTTATTGATTTTGAGTACGCCAGTTATAACTACAGGT-GTGGTTTGATATTTGGTG--------TCTTTCAAGtacttttgtgttttcagagCATTCGACTTTGCTAATCACTTTATCGAGTGGACCATTGACTACGATATCGATGAGGCACCGTTCTATAAGATTCAACCGGAGAACTTCCCAGAAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20191 483 +   386604 TTTCAGATGGCTCAAACAGCTAACTGGAACTGTTGCGGCAGAGCACCGCTTTGATCTTCCAGAGGAATGTGGTGTTTCGAGTGTCAATTGTCTTGATCTTGCTAGAGAACTCGAGTTCTTGCGTGCTCACATTTCTCTTAGCAAGAGTCCAGTGACATTCTGTCATAATGACTTGCAAGAAGGTAACATTCTGCTTCCAAAAGCATCATCTGGTAACATTCGAATGCCTTCATTGTCTGATGAGACTCAAGCATTGGGAAACAGTTTATCGGCATTCAATCCGGCAGATCCACGTCTTGTTCTGATTGATTTTGAGTATGCTAGTTACAACTACAGGTAAA---TTGACA-GTGGAAGTG-----GAAAAAGACCGTTTTTC-TATCCCAGAGCTTTTGATTTTGCAaatcatttcattgaatGGACCATCGACTATGATATTGACGAGGCACcattttataaaattcaaaCGGATGACTTCCCAGAGAATGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537414 486 +  4147112 tttcagaTGGCTCAAACAGCTCACTGGAACTGTGGAGCCAGGACATCTCTTTGATCTCCCGGAAGAATGCGGTGTTTCCAAGGTCAACTGCATCGATCTTGCTAGAGAATTGGAGTTCTTGAGAGCTCATATCTCATTGAGCAAGAGTCCAGTGACATTCTGTCATAACGACTTACAAGAAGGCAACATTTTGTTGCCAAAAGCTTCATCTGGAAACATCCGCATGCCATCTTTGTCGGATGAGACTCAAGCATTGGGTAACAGTCTTTCGGCATTCAATCCAGCCGATCCACGATTGGTGCTCATTGATTTCGAGTACGCTAGTTACAACTACAGGTA------TGATATATGGAAATTACCACGAAAGTAACAATTTAAA-TGTTACAGAGCATTTGATTTCGCCAACCACTTCATCGAGTGGACAATCGACTACGACATCGATGAAGCCCCATTCTATAAGATTCAACCGGAGGACTTCCCGGACAATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  226652 480 -   375229 tttcagatGGCTAAAACAGCTAACTGGAACTGTTGCCGCAGAACACCGTTTCGACCTGGATGAAGACTGTGGAGTTTCCAGCATCAACTGTTTGGATCTTGCACATGAGTTGGAATTCCTCCGTGCACACATCTCGCTGAGCAAGAGCCCTGTAACCTTCTGCCACAACGACCTGCAAGAAGGAAACATTCTTCTGCCAAAGGCATCGTCTGGAAACATTCGCATGCCGTCCTTGTCCGATGAAACACACGCGCTGGGAAACAGTCTCTCGGCATTTAATCCCGCAGACCCGCGTCTCGTTCTTATCGACTTTGAGTACGCTAGCTACAACTATAGGTACT---TTTACACTTTTAC--------ACGAAACGCTACGTGT--GTTTTCAGAGCATTCGATTTTGCAAACCACTTCATTGAGTGGACTATCGACTATGATATCGATGAAGCTCCGTTCTACAAGATCCAAACGGAGAACTTTCCACAGAATGA
i caeJap4.Scaffold17084 I 628 I 4

a score=3723.000000
s ce10.chrX             4290581 6 + 17718866 TCAAGT
s cb4.chrX              9398843 6 + 21540570 ACAGGT
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0  1248805 6 -  4500979 GCAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20674 6 +   386604 TCAGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537900 6 +  4147112 GCAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  227132 4 -   375229 I

a score=-2652.000000
s ce10.chrX             4290587  9 + 17718866 A----AGTTTTAA-
s caeRem4.Crem_Contig0  1248811 13 -  4500979 Gagatgaattcaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20680  9 +   386604 -----AGCTCTGTT
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2537906  9 +  4147112 -----TGGTCCAAA
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold17084  227132  4 -   375229 I
e cb4.chrX              9398849 35 + 21540570 I

a score=494.000000
s ce10.chrX             4290596 22 + 17718866 ----AATAATTTTGTTAAATAAACAA
s caeRem4.Crem_Contig0  1248824 26 -  4500979 aaaaaaagtttctgagtGATAAACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20693 22 +   386604 ---TAAAGTtttaaagaga-aaacga
i caeSp111.Scaffold622  I 4 I 1
e caePb3.Scfld02_0      2537915 32 +  4147112 I
e caeJap4.Scaffold17084  227132  4 -   375229 I
e cb4.chrX              9398849 35 + 21540570 I

a score=257.000000
s ce10.chrX             4290618 9 + 17718866 CTACTGTAA
s caeRem4.Crem_Contig0  1248850 9 -  4500979 CTGTTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2537915 32 +  4147112 I
e caeJap4.Scaffold17084  227132 4 -   375229 I
e cb4.chrX              9398849 35 + 21540570 I
e caeSp111.Scaffold622    20715 1 +   386604 I

a score=0.000000
s ce10.chrX             4290627 398 + 17718866 CTTACAGTTTTACAAGCAAGAATGGGTTTCAATAGATCTGCAGCGCTACAAAAGTAGTAGAGATTAATTTTCGAATCACCCAGAAATTACAAAAAAAAAGTGATTTTGAGTGTGTTTAGAGAAGAATTAGAGATCATTTAGGTTTCGGCTGAAATATATTAAAACTGACTTAAGCATTTCTCAATACAGTTTGCAATTTAGCCAAACTTACTTTGTCACAGTCACCGAAATTAGTTTTCATTTAATTAGCCTCCTATTTGCCGTTTTTCAAAACCCCATTTGTAGGCAAAAGGTATACAAAATTCTGTGAGCATCTTATGATTTTCTCCCCAAATTCCCACAAATAATTTTCGCTCTAGACACAAATTAGTGAAAAATTAGTGAACAGCTCTATTTAC
e caePb3.Scfld02_0      2537915  32 +  4147112 I
e caeJap4.Scaffold17084  227132   4 -   375229 I
e cb4.chrX              9398849  35 + 21540570 I
e caeSp111.Scaffold622    20715   1 +   386604 I
e caeRem4.Crem_Contig0  1248859   0 -  4500979 C

a score=29.000000
s ce10.chrX             4291025 3 + 17718866 TCC
s cb4.chrX              9398884 3 + 21540570 TTT
i cb4.chrX              I 35 C 0
e caePb3.Scfld02_0      2537915 32 +  4147112 I
e caeJap4.Scaffold17084  227132 4 -   375229 I
e caeSp111.Scaffold622    20715 1 +   386604 I
e caeRem4.Crem_Contig0  1248859 0 -  4500979 C

a score=546.000000
s ce10.chrX             4291028 2 + 17718866 AT
s cb4.chrX              9398887 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    20716 2 +   386604 at
i caeSp111.Scaffold622  I 1 C 0
e caePb3.Scfld02_0      2537915 32 +  4147112 I
e caeJap4.Scaffold17084  227132 4 -   375229 I
e caeRem4.Crem_Contig0  1248859 0 -  4500979 C

a score=546.000000
s ce10.chrX             4291030 1 + 17718866 T
s cb4.chrX              9398889 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    20718 1 +   386604 t
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537947 1 +  4147112 T
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold17084  227132 4 -   375229 I
e caeRem4.Crem_Contig0  1248859 0 -  4500979 C

a score=3517.000000
s ce10.chrX             4291031 5 + 17718866 TTCAG
s cb4.chrX              9398890 5 + 21540570 TCCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1248859 5 -  4500979 TTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    20719 5 +   386604 ttcag
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2537948 5 +  4147112 TACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  227132 4 -   375229 I

a score=185017.000000
s ce10.chrX             4291036 185 + 17718866 ATGCTCGAATTCTTCTTGAACTATCTTCGCGAACAAGGCAATACCAGAGAAAACGAACTCTACAAGAAATCCGAAGATCTTGTCCAAGAAACTCTTCCGTTTGTTCCAGTCTCTCATTTCTTTTGGGGTGTGTGGGGACTGTTGCAAGTCGAACTTTCCCCAGTTGGATTCGGATTTGCGGTGAG
s cb4.chrX              9398895 185 + 21540570 ATGCTCGAGTTCTTTGTCAACTATCTTCGTGAGCAAGGGAACACTCGTGAGAACGAACTCTACAAGAAATCCGAGGAGCTTGTCCAAGAGACGCTTCCATTTGTTCCagtctctcattttttctgggGCGTCTGGGGATTGCTTCAAGTTGAACTTTCTCCAGTTGGATTTGGATTCGCGGTATA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1248864 185 -  4500979 ATGCTCGAATTCTTTGTGAACTACCTTCGCGAGCAAGGAAACACTAGAGAGAATGAGCTTTACAAGAAATCGGAGGATCTTGTCCAGGAAACTCTTCCATTCGTTCCAGTTTCTCACTTCTTCTGGGGTGTTTGGGGACTGCTTCAAGTTGAACTCTCACCAGTTGGTTTCGGATTTGCGGTACG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    20724 185 +   386604 atgcttGAGTTCTTTGTGAATTATCTACGTGAGCAGGGAAACACCCGTGAGAACGAACTCTACAAAAAAGCAGAAGATCTTATTCAAGAGACACTTCCATTTGTTCCagtctctcatttcttctggGGTGTCTGGGGACTGCTCCAAGTCGAACTCTCACCAGTTGGATTCGGATTTGCGGTACG
i caeSp111.Scaffold622  C 0 I 34
s caePb3.Scfld02_0      2537953 185 +  4147112 ATGCTCGAGTTCTTTGTCAACTATCTGCGTGAGCAAGGAAACACTCGTGAGAACGAGCTCTACAAAAAAGCGGAAGATCTCATTCAGGAGACTCTCCCGTTTGTTCCGGTGTCCCATTTCTTCTGGGGTGTCTGGGGATTGTTACAAGTTGAACTCTCTCCAGTTGGATTTGGATTCGCGGTAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  227136 185 -   375229 ATGCAAGATTTCTTTGTAAACTACCTCCGCGAACAAGGACACACTCGAGAGAACGAACTTTACAAAAAAGCTGATGAATTGATCCTGGAAACATTACCATTCGTGCCGGTCTCCCATTTCTTCTGGGGAGTTTGGGGGCTACTTCAAGTGGAGCTTTCCCCTGTCGGATTTGGATTTGCGGTATG
i caeJap4.Scaffold17084 I 4 I 5

a score=-10073.000000
s ce10.chrX             4291221 34 + 17718866 AAAATGATAAAATAAAGTA-----------GTTTTAACAAAACCT
s cb4.chrX              9399082 33 + 21540570 Acaatgaaaagttgaaatc------tcTCACATCTAATT------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1249051 35 -  4500979 -TACCTACTGACTACTATc---taatcttatttttcata------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      2538138 40 +  4147112 CTAATCATCGATTGTGACT-----GGCTGGAATTTAAACAACCCC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  227326 34 -   375229 -AAAATGTAAagcaaaatttaataaaattgtattt----------
i caeJap4.Scaffold17084 I 5 C 0
e caeSp111.Scaffold622    20909 34 +   386604 I

a score=68040.000000
s ce10.chrX             4291255 103 + 17718866 ATTATAGGACTACGGGAGAGATCGTCTGTCGCTGTACTTCAAACATAAACAACTTCTCAAAAACCTTGCAAGTCATCAATAA----GATCTTCTTTTAATCTCAATT-
s cb4.chrX              9399115 100 + 21540570 GTTTCAGGATTACGGAAGAGATCGTCTCTCGCAATATTTCAAGCACAAGCAGCTTCTCAAGAATCTTGCTCTTCACCATTGA-------TCtcaatttgttttcttt-
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0  1249086 100 -  4500979 ctttcagGAATATGGAAGAGATCGCTTGTCTCAATACTTCAAGCACAAACAACTCCTTGAAAACCTTGCACACCAGTAATAA-------ACTCTCCCgatctctttt-
i caeRem4.Crem_Contig0  C 0 I 148
s caeSp111.Scaffold622    20943 100 +   386604 ATTACAGGACTATGGAAGAGATCGTCTCTCTCAGTACTTCAAACACAAGCAGCTTCTCAAGAACCTTGCTCATCAGCAATAA-------AGACTCACGATCTCACCA-
i caeSp111.Scaffold622  I 34 C 0
s caePb3.Scfld02_0      2538181 107 +  4147112 TTTTCAGGAGTACGGAAGAGATCGTCTCTCGCAGTACTTCAAGCACAAACAACTTCTCAAGAACCTCGCTCTTCAGCAATAATTTATATGATCTCTCTGTCTTATTA-
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  227360 106 -   375229 atttcaGGATTACGGAAGAGATCGTCTCACCCTCTACTTTAAAAacaaacagcttttgaaaaacCTTGCCCTTCAGCAATAA--GTACTGATctcttaatttttaatt
i caeJap4.Scaffold17084 C 0 C 0

a score=-1847.000000
s ce10.chrX             4291358  4 + 17718866 -------------TTTA-----
s cb4.chrX              9399239  4 + 21540570 -------------TTTC-----
i cb4.chrX              I 24 I 42
s caeRem4.Crem_Contig0  1249334  4 -  4500979 -------------TTTA-----
i caeRem4.Crem_Contig0  I 148 I 28
s caeSp111.Scaffold622    21043  4 +   386604 -------------TTTC-----
i caeSp111.Scaffold622  C 0 I 26
s caePb3.Scfld02_0      2538288  4 +  4147112 -------------TTTT-----
i caePb3.Scfld02_0      C 0 I 390
s caeJap4.Scaffold17084  227466 22 -   375229 tgttcTACTTATTCTTCTGTTA
i caeJap4.Scaffold17084 C 0 C 0

a score=24280.000000
s ce10.chrX             4291362 345 + 17718866 --------ATTAAA----------CACAGCTGCTT----TAATTGAACATGCTAGTTTTTCTACGCAATCTCCCACCATTGTTCCTACA---------------------AGTAGTTTGAT-GGGTGTAGTTAAA---------------TAAAAATGT-----------------------TTAT------------------TGGCAATT-----------------------------GGTT---------TGACTGGGAGATGATAGATACCCG------------------TGAGATAACAAACTCGATGATAAA-TTCACAAAACAGGATAC---AAAATTTAAAGTTTGTATTTTTCACGTCCATAAATCTCGTTGCTGATGAAGCTAGAAAACTTTTCATCTTTCAACTTTTGAGCTCCATCCTTTCCATTTTCAAGAAAAGCGAGAGAAAGTTCGATGGCAGCTTGCATGCACAATGATGGTTCCGTTCGGCCCTG
s cb4.chrX              9399285 372 + 21540570 -------------------------atcatttttc-------tctttcccttATGGAATTGTTCTCAAACCCTTGTATAGTCTCATTTT---------------------AGT--TTCGAT-GGGTTTAGTTAAA---------------TAAATAATTTGG-------gcagaa-aaatattcaa---------------aagcgatattt--attcaaaaaatcag-gcCAG--AACACAAAT---------CAGCTGG--GATTTCACATACCCGTGTAGACAAAACTacaattcaaattcaaaaa--aaagacagg---------------------TTGAGTTAGAGTTTGAATTTCTCTCTACCGTAAACTTCATTGGAAATGAAATCAGAGAATTTTTCATCTTTAAGACGTTGTGCTCcagtttttccttcttccagaAAAACCATGGAAAGCTCAATAGCGGCTTGGATGCACGTCGATGGTTCGGTGGAACCCTG
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0  1249366 260 -  4500979 ----------------------------------------------------------------tcaa----------------atttt---------------------att--caCAGT-AGCATCGGCATTA---------------CAAAAAATCGGA--------------------TTGA---------------AAACGGCATTC------------------------------------------------G--GATGATATAGACCCg------------------ttgaataaaaaca--aaatgatgT---------------------TTCATTTAGAGTTTGAATTTCTCTCGACCGTAAACTTCATTGGTAATAAAGTTGGAGAACTTGTCatctttgagtttttgagctccctcttttccttcttcaagAAAAGCTAAAGAAAGCTCGATGGCGGCTTGCATACAAAGCGAAGATTCAGTTGAtccctg
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold622    21073 420 +   386604 --------ATTAAT-----------ACTATTTCTCT-TACAGTCAAACAATTTTAGTATTCATCCGAACCGTCTTCTCTGTCTCATTTTCACCATCATTGAT---TAGTTAGT--TATGATGAGTGTAGTTCGAA---------------TAAATATGTTGAAAGTATCgcagaatttatttttac------tcACATTCTATTCAGCAGT---ATAAGAAAAATCGGTATCAG--AAACGGCAT---------TAGTTGG--GAAGATACATACCCG------------------Tttgacaaagaaa--aaaaagaataaacaaaaagatgattAC---ATGGattataatttgaatttttcgcgACCGTAAACTTCGTTGGTGATGAAATTGGAGAACTTCTCGTCTTTGAGTTGCTGAGCTCCTTCTTTGCCGTTTTCAAGGAAGGCTAATGATAGTTCGATGGCAGCTTGAATGCATAATGATGATTCTGTTGCTCCCTA
i caeSp111.Scaffold622  I 26 C 0
s caePb3.Scfld02_0      2538682 397 +  4147112 --------attaaa-----------ataattattc----caTTCAATCA--TTTA----TCATCGGAA-----------AGTTCATTTG-------ATAGGT---TTGACAGT--TGTAAT-----Taaattaca---------------gaaaagtttAAGAAATATCGCAGAA-TTATCTTTACAGCAGGTCACATTTATAGCGGCAATCAGAAAAAGCAAATCGGTTTCA---AAACGGCAT---------TAGATGG--GATGGTACATACCCG------------------TCTGACAAAAAAGTTAATAGTGATAAACTCTACAATAATTAC--TGTGATTTAGAGTTTGAACTTCTCGCGTCCATAGACTTCATTGCTGATGAAATCAGAATATTTCTCATCTTTGAGACGTTGTGCTCCGGTTTTTCCTTGTTCAAGGAAAGCGAGAGATAGTTCAATAGCGGCTTGAAGGCACAAAGAAGACTCAGTGGCTCCCT-
i caePb3.Scfld02_0      I 390 C 0
s caeJap4.Scaffold17084  227488 450 -   375229 ATTCTGTCACAAAACCCCAGCGCACACACTTATTAGATCCACCCATTTAGAATTAAAATTTTCCTCTATCCTTTCctttcactgttttt-------tctgATACCTAGCTAGT--CTTGAT-GGGtgtagttttaattttttattaattgtAAGTAGCAAAACTATGTTTCAAAGCATGTCTTTAT-----------------TCCAAATAC--CAAAAACAAAGTGGAATGAGCAAACATGAATACGACAGTATGATAAG--GATATTCAATATCCG------------------------AAAAAAGTACAGGAGAGCGATCtggctgaaaaatgcattcaAGCCTGGGCCTTAAACTTTTCGCGGCCATAGATTTCATCGCTAACAAACTTCGAAAACTTGTCATCTTTCAACTTTTGAGCTCCTTCTTTTCCGTTGGCAAGAAACTCCAGTGACAATTCAATGGCAGCTTGCATACAAAGTGACGATTCTGTGCGTCCCTG
i caeJap4.Scaffold17084 C 0 C 0

a score=-19.000000
s ce10.chrX             4291707 3 + 17718866 Caa
s cb4.chrX              9399657 3 + 21540570 ATA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17084  227938 3 -   375229 AAA
i caeJap4.Scaffold17084 C 0 I 25
e caePb3.Scfld02_0      2539079 0 +  4147112 C
e caeSp111.Scaffold622    21493 0 +   386604 C
e caeRem4.Crem_Contig0  1249626 0 -  4500979 C

a score=-1210.000000
s ce10.chrX             4291710  9 + 17718866 ttaaatttt--
s cb4.chrX              9399660  9 + 21540570 TAGGATGTT--
i cb4.chrX              C 0 I 29
s caeSp111.Scaffold622    21493 11 +   386604 AAAGAAATTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2539079  8 +  4147112 ---GAAATTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  227941 25 -   375229 I
e caeRem4.Crem_Contig0  1249626  0 -  4500979 C

a score=-558.000000
s ce10.chrX             4291719 2 + 17718866 aa-
s caeSp111.Scaffold622    21504 3 +   386604 GAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2539087 2 +  4147112 AA-
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold17084  227941 25 -   375229 I
e cb4.chrX              9399669 29 + 21540570 I
e caeRem4.Crem_Contig0  1249626 0 -  4500979 C

a score=100.000000
s ce10.chrX             4291721 1 + 17718866 c
s caeSp111.Scaffold622    21507 1 +   386604 C
i caeSp111.Scaffold622  C 0 I 23
e caePb3.Scfld02_0      2539089 37 +  4147112 I
e caeJap4.Scaffold17084  227941 25 -   375229 I
e cb4.chrX              9399669 29 + 21540570 I
e caeRem4.Crem_Contig0  1249626 0 -  4500979 C

a score=0.000000
s ce10.chrX             4291722 401 + 17718866 gttttaattttaattttttttaGAACGGTTAGTGGAAGCGACACTTATGATGTCAAAAAGAACAAGTATAACATAGTAAAACTATTCAATAATGTTTTTGAAAAATGTTTATCGACTGTGAAAAGGTAGCAATAACTGTGTTTTTGTCAGTTTTTGAAATAAAAAAGGtttttttttttaaatttaaaaacatttttattttGAATCAAAAAGTGGTGAACCCTGACTTTACGCCACTTTCCGAAATATCTAAAGCACTGTCACATGTTCAAACTCTTACAATGTTGAAACATTAAAACATTAATATTTTAAACACAATTAGAAGATACAACTGAAAAAATAGTTTTTTGATCGACGACTTAAAAAAAAGAAGAACACTAAGATTTCATCATTTTTGCCTA
e caePb3.Scfld02_0      2539089  37 +  4147112 I
e caeJap4.Scaffold17084  227941  25 -   375229 I
e cb4.chrX              9399669  29 + 21540570 I
e caeSp111.Scaffold622    21508  23 +   386604 I
e caeRem4.Crem_Contig0  1249626   0 -  4500979 C

a score=-616.000000
s ce10.chrX             4292123 60 + 17718866 AGAATAAAAAATACTTCCAACACTTTTAAACATTTTAGCAATGTGGGAGAGTCTATTTTT
s caeRem4.Crem_Contig0  1249626 36 -  4500979 aaaataataa-------------tttttggtttggTAAAACTGTATGAG-----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2539089 37 +  4147112 I
e caeJap4.Scaffold17084  227941 25 -   375229 I
e cb4.chrX              9399669 29 + 21540570 I
e caeSp111.Scaffold622    21508 23 +   386604 I

a score=404.000000
s ce10.chrX             4292183 9 + 17718866 ATAAAAATA
s caeRem4.Crem_Contig0  1249662 9 -  4500979 TTAACGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  227966 9 -   375229 ATAAAAACA
i caeJap4.Scaffold17084 I 25 C 0
e caePb3.Scfld02_0      2539089 37 +  4147112 I
e cb4.chrX              9399669 29 + 21540570 I
e caeSp111.Scaffold622    21508 23 +   386604 I

a score=726.000000
s ce10.chrX             4292192 2 + 17718866 TC
s caeRem4.Crem_Contig0  1249671 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    21531 2 +   386604 TT
i caeSp111.Scaffold622  I 23 C 0
s caeJap4.Scaffold17084  227975 2 -   375229 TT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2539089 37 +  4147112 I
e cb4.chrX              9399669 29 + 21540570 I

a score=451049.000000
s ce10.chrX             4292194 514 + 17718866  
s cb4.chrX              9399698 514 + 21540570  
i cb4.chrX              I 29 I 752
s caeRem4.Crem_Contig0  1249673 513 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    21533 514 +   386604  
i caeSp111.Scaffold622  C 0 I 197
s caePb3.Scfld02_0      2539126 512 +  4147112  
i caePb3.Scfld02_0      I 37 I 2
s caeJap4.Scaffold17084  227977 520 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=888.000000
s ce10.chrX             4292708 12 + 17718866 CATCACA------TTTGT
s caeRem4.Crem_Contig0  1250190 18 -  4500979 TATCATAAGATGATCTGT
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      2539640 18 +  4147112 AATCAAGTCTTGCTTTGT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  228497 12 -   375229 AATCAAG------TTTAT
i caeJap4.Scaffold17084 C 0 I 1145
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I

a score=-11647.000000
s ce10.chrX             4292720 202 + 17718866 T----TTTAATAAATGCTAAAAATACTCTGAGGGTGACAAGACCAGCATCAAAAAACAGTCAACAAAATGACATCATATCACACAAAAACAGAAACAAAAAAGATTCAAAATTTGACAAATGTATCAATTAAGAGACCGATGAGTATATCGGAAATTTTTCA-----AATACCGTACTCC----GTATAACATTTGTAaaaggattaaaaaacga
s caeRem4.Crem_Contig0  1250208 118 -  4500979 T-CTCCCTAGCAAGTTTTAGCTAG--------------------TGTGTCCAGAAGTAT----AAAACAAATACTATGT-------------------------------------------TATCGTCCAGTTAGTCCA----CATGTT----ATTCCCTG------ACATCATTGGTT----GTAACATAATTAT-----------AAACCAA
i caeRem4.Crem_Contig0  C 0 I 175
s caePb3.Scfld02_0      2539658 147 +  4147112 TAATGTCGAACGAAGTACAAAAAT--------------------TGCACAC-GAAGT--------AATGGGTCCTATATCTGAC---------------------------TTTGTTCA---TTTCGAACAGCAGAACAA----AATGTTCGCAATTAGTTGTAAAAAActtgatagttttttgataacgcACCTGTACAAAG-----AAATCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I

a score=-1542.000000
s ce10.chrX             4292922 90 + 17718866 ttaagggacgatccgttcttcaagtgctatgcactgcggatctgggattcaggtacactgcctggtggtgatccctctgggctgtaattt
s caePb3.Scfld02_0      2539805 25 +  4147112 TTCA--------------------------------TAGATCAGAGAt---------------------------------ctgtgtttt
i caePb3.Scfld02_0      C 0 I 116
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I
e caeRem4.Crem_Contig0  1250326 175 -  4500979 I

a score=0.000000
s ce10.chrX             4293012 180 + 17718866 aagccacgtcctagccggggactctggccgataattcagtcgtggattgctccacttcccaatagaggctgggtgaatctagggggtgaagccggacttgaactcgttacctccagacggctagcggtaaccactaccgactgagctatctacccccCCCCCCTCCTGAGTATATTGGAA
e caePb3.Scfld02_0      2539830 116 +  4147112 I
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I
e caeRem4.Crem_Contig0  1250326 175 -  4500979 I

a score=-24.000000
s ce10.chrX             4293192 23 + 17718866 ATTTTTCAATCACCGTACTCCGT
s caeRem4.Crem_Contig0  1250501 15 -  4500979 GTCATTCAATAGCCG--------
i caeRem4.Crem_Contig0  I 175 C 0
e caePb3.Scfld02_0      2539830 116 +  4147112 I
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I

a score=-2721.000000
s ce10.chrX             4293215 34 + 17718866 ---ATAACA---TTTGTAACTTTAAATAATTATAGTTACA
s caeRem4.Crem_Contig0  1250516 18 -  4500979 ATAATACCAAACTCTGGA----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2539946 31 +  4147112 ---gtaccatttttgaaaaaccttatCGATCATC------
i caePb3.Scfld02_0      I 116 C 0
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I
e caeSp111.Scaffold622    22047 197 +   386604 I

a score=-321.000000
s ce10.chrX             4293249 6 + 17718866 CTTTCA-
s caeRem4.Crem_Contig0  1250534 5 -  4500979 -CTAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    22244 6 +   386604 CCTTCA-
i caeSp111.Scaffold622  I 197 C 0
s caePb3.Scfld02_0      2539977 7 +  4147112 TTTTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  228509 1145 -   375229 I
e cb4.chrX              9400212 752 + 21540570 I

a score=1146.000000
s ce10.chrX             4293255 2 + 17718866 CA
s caeSp111.Scaffold622    22250 2 +   386604 CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2539984 2 +  4147112 CA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  229654 2 -   375229 CA
i caeJap4.Scaffold17084 I 1145 C 0
e cb4.chrX              9400212 752 + 21540570 I
e caeRem4.Crem_Contig0  1250539 0 -  4500979 C

a score=329781.000000
s ce10.chrX             4293257 343 + 17718866 CTTACCTGTTGATTCCTAATCTTGAATTCATTTTTTTCATTCTTCTCGATCAGTTTGATCTTGATCGGCTGTTCCACCAACTCTCCATTTTTCTCCGTCAATTGGTAGGTCCAACATGCGGAATGATCCCTGCAAGAAA-----AAGCAACATGATC-ACATC--TTCC-----CCCAGATTTTC---------------------CCCACTTATGTTCGACAGCTGCGACAACGTAGCCGTGAGAGGCCAACGACGTGCAGTACGTGGAGTAGAACGTGCGCGAACCACCGAGACCATGGGAGAACACGACAATCGGCCATTTGTCACATTTTGTTGACATCTGAGCATTCTCAATACAATCTTCCCTGGAAAAAA-------
s cb4.chrX              9400964 373 + 21540570 CTCACTTGTTGATTTCTGATCTTGAACTCattcttctcattcttctcAATCAGCTTAATCTTGATCGGTTGCTCCACCAACTCTCCATTTCGCTCCGACAGCTGATAGGTCCAACACGCCGAGTGGTCcctgcaaaaaagaaatttgcaagatgctc-ttctcaatttct--a-cacAGATTTGTTCATTTGTGTGTGTTTTCTCGCCTACTTATGCTCGACAGCTGCGACGACATATCCGTGAGAGGCCAACGAAGTGCAGTAGGTGGAGTAGAATGTGCGTGAACCACCGAGACCATGCGAGAACACGACAATCGGCCATTTGTCACACTTCGTTGACAGTTGCGCATTCTCGATGCAGTCTTCTCTGAAACTTG-------
i cb4.chrX              I 752 I 1
s caeRem4.Crem_Contig0  1250539 347 -  4500979 CTCACTTGCTGATTTCTGATCTTGAActcattcttctcattcttctcaatCAGTTTAATTTTGATCGGCTGCTCCACCAGCTCTCCGTTTTTCTCCGACAGCTGATAGGTCCAGCAGGCTGAGTGGTCCCTGCAAAAA------TTGCAACATAATC-TTCTCGCTCACTTAA-TCCGGATTTGT----------------------CTACTTATGCTCGACAGCTGCGACAACGTAGCCGTGAGAGGCCAACGACGTGCAGTAGGTGGAGTAGAAAGTGCGAGAACCGCCGAGACCATGGGAGAACACGACAATCGGCCATTTGTCACATTTCGTTGACAGTTGAGCATTCTCGATGCAATCctctctgaaatcaa-------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    22252 346 +   386604 CTCACCTGTTGGTTTCTGATCTTGAACTcgtttctctcattcttctcgATCAGTTTAATTTTGATCGGCTGCTCCACCAACTCTCCGTTTTTCTCCGACAGCTGATAGGTCCAACAAGCGGAGTGGTCCCTGCAAAAA------TTGCAACATGATC-GTTTC--TCACTCAATTCCGGATTTGT----------------------CTACTTATGCTCGACAGCTGCGACAACGTAGCCGTGGGAAGCGAGAGACGTGCAGTAGGTGGAGTAGAAAGTGCGCGAACCACCAAGACCATGGGAGAACACGACAATCGGCCATTTGTCACTTTCCGTTGACAGTTGAGCATTTTCTATGCagtcttctctgaaaacaa-------
i caeSp111.Scaffold622  C 0 I 30
s caePb3.Scfld02_0      2539986 346 +  4147112 CTCACCTGTTGGTTTCTGATcttgaactcatttttctcattcttctcaatgAGTTTAATCTTGATCGGCTGCTCCACCAattccccatttttctccGACAGCTGATAGGTCCAGCAAGCAGAATGGTCCCTGCAAAAA------TTGCAACATGATCTTTTTC--TCACTCAA-TCCGGATTTGT----------------------CTACTTATGCTCGACAGCTGCGACAACGTATCCGTGTGAAGCGAGCGACGTGCAGTAGGTGGAATAGAAAGTGCGCGAGCCTCCAAGACCATGGGAGAACACGACAATCGGCCATTTGTCACACTTGGTTGACAATTGAGCATTCTCAATGCAATCTTctctgaaaacca-------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  229656 345 -   375229 CAAACCTGTTGGTTTCTGATCTTGAACTCGTTTTTCTCATTCTTCTCAATGATTTTAATCTTGATCGGCTGCTCGACGAGCTCTCCATTCTTCTCTGTCAGCTGATAAGTCCAACAGGCGGATTGGTCCCTGCAAAA-------TTGTCTCAACATT-GCATC-----CT----CTTGGTTTTTA----------------------ATACCTGTGCTCGACAGCTGCTACCACATATCCGTGCGAGGCCAATGACGTACAATATGTGGAGTAGAAAGTGCGAGATCCGCCAAGACCGTGAGAAAACACGACAATCGGCCATTTGTCCTTTTTCGTTGATAATTGAGAATTTTCAATGCAATCTTCTCTATAAGCTTTggataa
i caeJap4.Scaffold17084 C 0 C 0

a score=910.000000
s ce10.chrX             4293600 1 + 17718866 T
s cb4.chrX              9401338 1 + 21540570 T
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1250887 1 -  4500979 t
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2540334 1 +  4147112 t
i caePb3.Scfld02_0      I 2 I 41
s caeJap4.Scaffold17084  230001 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    22598 30 +   386604 I

a score=-5699.000000
s ce10.chrX             4293601 26 + 17718866 AA--------AGATG--GCATACATCTAAAGGGCAG
s cb4.chrX              9401339 36 + 21540570 GAATGcgtttggaagaaaaaaatgcgtAAGAATAAA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1250888 32 -  4500979 tg--GGGTTCAGATG--GAAGATTTGTCAAGTTGAG
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold17084  230002 18 -   375229 -----------aata--aataatgtGCACAC-----
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2540335 41 +  4147112 I
e caeSp111.Scaffold622    22598 30 +   386604 I

a score=-3406.000000
s ce10.chrX             4293627 13 + 17718866 GATAATATTTCTG
s cb4.chrX              9401378 13 + 21540570 AATGGCGAATGca
i cb4.chrX              I 3 I 15
s caeRem4.Crem_Contig0  1250921 10 -  4500979 AATGTC---TGCG
i caeRem4.Crem_Contig0  I 1 I 7
s caePb3.Scfld02_0      2540376  5 +  4147112 AATAT--------
i caePb3.Scfld02_0      I 41 C 0
s caeJap4.Scaffold17084  230020 13 -   375229 AATTGCAGTCGTT
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    22598 30 +   386604 I

a score=118140.000000
s ce10.chrX             4293640 140 + 17718866 ACGTACCTTTTTTCTCCAACAACGGTTGATGTAATAACATTCATTTTCTGAGAAGATTGGCCTAAATATTCACCAAGTCCGTGTGCATATTGAGGTTTAGGAAGCCATAATGGATATGAAGAGATGTCGGCGGCCTATAA
s cb4.chrX              9401406 140 + 21540570 gcGGACCTCTTCTCTCCGACTATCGCCGATGTGATCAAATTCATCTTCTGTGGAGATTGCCCGAGATATTCTCCGAGTCCGTGAGCATATTGTGGTTTTGGTAGCCATAATGGGTATGAAGAGATGTCGGTGTTCTGCAA
i cb4.chrX              I 15 I 36
s caeRem4.Crem_Contig0  1250938 140 -  4500979 TCGAACCTTTTGTCTCCGACAACCGTTGAAGTGAgaagattcattttttgtggagATTGTCCTAGATATTCTCCAAGACCATGAGCGTACTGAGGTTTTGGGAGCCATAGTGGGAACGACGAGATATCGGTGACctagaa
i caeRem4.Crem_Contig0  I 7 I 858
s caeSp111.Scaffold622    22628 140 +   386604 ACAAACCTTTTCTCACCAACAACTGTTGAAGTGAGtagattcattttctgtggAGATTGTCCTAAATACTCTCCGAGTCCATGAGCATATTGGGGTTTTGGAAGCCATAATGGGAAAGATGAAATATCTGTGACCTGTAa
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2540381 140 +  4147112 GCAAACCTCTTTTCACCAACAACAGCAGATGTTAgcagattcattttttgtggtgaTTGTCCAAGGTATTCTCCTAGACCGTGAGCATATTGCGGTTTTGGCAGCCATAATGGGAATGATGTGATGTCGGTGACCTGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  230033 140 -   375229 GCTAACCTCTTTTCTCCTACGATTAATGATGTGATTAGGTTCATTTTCTGTGGGGATTGTCCCAGATATTCGCCGAGTCCGTGCGCGTATTGGGGCCGAGGAAGCCATAGTGGGAATTGCGAAATGTTCGCATCCTGCAA
i caeJap4.Scaffold17084 C 0 C 0

a score=-9223.000000
s ce10.chrX             4293780 42 + 17718866 CAAAAATTTGCG-GATTTTTTTGATTATATGAAAAATAAATTA-
s cb4.chrX              9401582 34 + 21540570 CAAGAATTCATGCGGAATGTCTAGC---------AACATCTTA-
i cb4.chrX              I 36 I 86
s caeSp111.Scaffold622    22768 34 +   386604 --atagattacg-gtaatcTCTAATC------TAAATGTCCTT-
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2540521 27 +  4147112 --ACAGAT-----GTTCTTATTAAT---------AATATCTTA-
i caePb3.Scfld02_0      C 0 I 307
s caeJap4.Scaffold17084  230173 28 -   375229 -----AAATGcg-actttgttttttt----------tttctttc
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1251078 858 -  4500979 I

a score=-43491.000000
s ce10.chrX             4293822 242 + 17718866 TTCAAAA----------AATCTATGAAATAATATCACATATATTG-----AATTGTTAGCACCAATAA-GGTTCCGTA------------------TTTTCT--------TTATTAATATTGAATGTA----ACACGAATTTTCAGAAGGTTTCCT---AGGTGAAGCGCTTATTGATAACT----------GCATTTTCTG---------------TTCA---------------AACTTTCataaaaaatta-------------------tactaataaaatttttaaac-------------aaaaaaaCCTA---------GTTCTCAAA--------------------------------------ACGTTAATTTCA-----------------------AAAAATTCACGCAGTTTTTGATCAA-------
s cb4.chrX              9401702 417 + 21540570 ATCAACGAGGATACGCTAATTtataaaatta---caaaaaaatcgaaaaaatctgttAGTGCT-------GTTcgataagatatacaaaaatgtatttttcaagtaATTTGTGGTCAGTTTGACCTtat---tcaagagtct---ggagatTGGCTTTGGAGACaggcctagattgaaaaattcgcattcacagaatttttggaaaatccccAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCggcaaaaatcttaaaaacaaggaattttcaaaaaaccctaTTAATGCCTGTTTTTTAATCTATGCCCGTTTACaccctctaaaattttcgaagtgatcggaaacttaacagccgagctccagactcttgaaaataatTGAAGTCGCTAacaattat-------
i cb4.chrX              I 86 I 43
s caeSp111.Scaffold622    22806 194 +   386604 TCCAACG---------TAGTAGACAAAA-------GAACAAATCG---------------------------------------------------TTTTCA--------TTAATCTCTTTTATCGTATCAATCAAAA--------GAGATTAATT---GAGACAAGTtgaga-------------------acaatttttt---------------ttca------------------ttgaaaaaaagatca----------------------cGCCAtaaattgcagaa-------------aaaaaacgata-------cTGTTCT------------------------------------------TTGTAGATTCAAAAGTTT-----------------AATTGTTTTAGTGGCAGAAAACCga-------
i caeSp111.Scaffold622  I 4 I 6
s caeJap4.Scaffold17084  230201 173 -   375229 ----------------------------------------------------ttcttgaTCTTGataacagttttatt------------------ttatca--------gaaacgtttttttttctaa---tcacTC--------AAAAGTTATT-------------GATATTGATATCT---------------TTCTT---------------ATCa---------------tgttaacaaaaaagttga-------------------tggaagcaaa-----------------------aaaaaacgaaa------------cttgaa--------------------------------------acgaaca----------------------------aaaaaatcacgCCATTTTTAATCTTACGCACC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2540548 307 +  4147112 I
e caeRem4.Crem_Contig0  1251078 858 -  4500979 I

a score=-20620.000000
s ce10.chrX             4294064  83 + 17718866 AATTGTATCACAAACAAAATAATC------AACTAATCTTTAAATGTTATACTGTA---AAAACAGTTA-------------------------TTCTGACATTACAACCGCATCTT
s cb4.chrX              9402162 117 + 21540570 CCTTgtccttttaaaatttcatacGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTagcttcacttttttctcattaaaaataaatagt
i cb4.chrX              I 43 I 4
s caeSp111.Scaffold622    23006  65 +   386604 acgttttcacaAGAAAATTTCGAC-TA-------ATTCCTTTCATAATTgagtaga---aaaaaag-----------------------------agtttcattA------------
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2540855  67 +  4147112 ACTTTtgcttcgaaaaaacaaaac----------actcACTCCATAATTGAGCAGA---AAGAGAGTCC-------------------------CTTTTTCATTA------------
i caePb3.Scfld02_0      I 307 C 0
s caeJap4.Scaffold17084  230374  39 -   375229 ATTTGGGGcccaaagaaaagaaaa----------agatacCCGAACTTT--------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1251078 858 -  4500979 I

a score=159486.000000
s ce10.chrX             4294147 185 + 17718866 ATATTTGAG-----CATTCTCGAA----------------A------------------CTAACTTGAGAATCCGTCGGAAAATAAAGTCTCATAAACAATCCACGATCTCCGAGAACTGTTCCATCGATCATTAAATCCTTGCACCCGACTTGAAACTGACCCGACACCTGGCGTGTTAGAACTTGTGGCGACGAGATATAGCTACCCA--TTGTATATCTGAAA
s cb4.chrX              9402283 226 + 21540570 ctttttgaacccattattcctatttttttcagaatccaccACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTGGTGACGAGATGAAACTACCCATTttgtttatctgaaa
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1251936 193 -  4500979 ATATTTGAGCGTGTTTTCCCTCTT-------------ACTA------------------CTCACTTCAGAATCCGTTGGAAAATATAGTCTCATGAATAATCCGCGATCTCCCAGAACAGTTCCATCGATCATCAAATCTTTGCACCCGACTTGGAATTGACCCGACACCTTTCGTGTAAGAACTTGTGGTGACGAGATGAAACTACCCA--Ttgtttatctgaaa
i caeRem4.Crem_Contig0  I 858 C 0
s caeSp111.Scaffold622    23071 187 +   386604 ATATTTAAG-----TAATCAGCTT--------------CAA------------------CTTACTTCAGAATCCGTTGGAAAATAAAGTCTCATGAACAATCCACGGTCTCCCAGAACAGTTCCATCGATCATCAAATCTTTGCACCCGACTTGAAATTGACCCGACACCTTTCGTGTAAGAACTTGTGGTGACGAGATGAAACTACCCA--TTgtttatctgaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2540922 186 +  4147112 ATATTAGAG-----TGTTTTCGTT--------------C-A------------------CTTACTTCGGAATCCGTCGGAAAATAGACTCTCATGAACAATCCACGATCTCCTAGAACGGTTCCATCGATCATCAAATCTTTGCACCCGACTTGAAATTGACCCGACACCTTTCTTGTAAGAACTTGTGGTGACGAGATGAAACTACCCA--TTgtttatctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  230413 174 -   375229 ----------------CACTTGTG----------------A------------------CTGACCTCTGTGTCGGTGGGAAAATAAATCCGCATGAAAAGTCCTCGATCGCCTAGAACCGTTCCGTCAATCATCAAATCTTTGCACCCGACATGGTATGGACCCGAAACTTTGCGCGTAAGAACTTGTGGTGACGAGATATAACCACCCA--TTGTTTATCTGCAA
i caeJap4.Scaffold17084 C 0 I 108

a score=-12376.000000
s ce10.chrX             4294332 158 + 17718866 -GTACaaactatgaaacta--taaaact-----ataaaacacaaaaactatacaaactataaaaATAACTAAAAT-TAG--------TTTGAGATTCA---CGAATA-AAATTATTCAAAACATTTCTGAAAAAATTTTTACAAAAGTA------AAGC------------------AACAGAGAATTCAAAGTAAAAAGGAA
s cb4.chrX              9402509 150 + 21540570 aatattacttcaagatttc--tgaaacc-----aacaaacaaaaagttt--------------------caacccattt--------tgtactttttgtaTGGAACACACAGGGTTaag--------taaaag---------aaaagaagacaaggagcttagaatataaagaagaaagaga-aaagtgaaaatgaaaatgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1252129 116 -  4500979 aacacgaaatggaattttcaattcgatc-----gaaaatgagaaag------------------------aacaC-TGG--------TGTACTTTTCG---GGAATA-AAACTGCTGAA--------TGGGGG---------AAC----------GAGC------------------AGAGACAAagcgaaaatgaaaatgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    23258  95 +   386604 ---------------------acaaatc-----ttGAAACTGAAGG------------------------AACAT-TGG--------TGTACTCTTGg---aga----aaaggggagga---------gaaac---------aaaagga------gaga------------------gagaccaaagtgagaatgaaaatgaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541108 114 +  4147112 ----------------ttcagaaaaatcagaatttggaatgaaaag------------------------aaaac-tgaacgGCGGCTGTACTTTTgc---aga----aagaaggagaa--------cggAAG---------AGAATGC------GAGC------------------AGGGccaaagtgaaaatgaaaatgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  230587 108 -   375229 I

a score=19243.000000
s ce10.chrX             4294490 148 + 17718866 TTCTTCTCGTCGTC-----CTTCACTTTGAACCTAA-----AAAAAATGGAGGGTTC---TAAAGGCAATTCTGCTGGAGGAGACAAAAA-ATGGAAGAAA---AATGACGTAGAAAAATTGGAAAAATTACG------G--CGGTT------------------------AGACACCAA----------CCGATGAAAAATTGCCG
s cb4.chrX              9402659 175 + 21540570 ggttt----tcctctcctttttccgtctgaa-ctac-----aaaaaattgaagggtTTGGTGGCAGCAATTCGACTAAGTCGTACGCAAA-AGGAGAGACA-AAAAATACGCAC--------AAAAAATTACA------G--CCGTCCTCGGAGATAGCTATAAATAATGGGAA----AAGTACGTTTGTTCGACGGAAATTTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1252245 142 -  4500979 ggcTT----TCTTC------CTTCTCCTGGA-CTAC-----AAAAAATAGAGGGGT----TGGCAGCAATTCGACTAAGTCGTACGAAAA-Aggagacaag-aaaaaaacggacGGA-----GAAAAATTACA------GCACCCTCCTC------------------CCGAAA----AA----------CCGATGAATTATTGCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    23353 142 +   386604 ggctt----tcctt-----ctttccttggaa-ctac-----aaaaaatggaagggT----TGGCAGCAATTCGACTAAGTcgtacgaaaa-aaaagaaagagcgAAAAATGGACGGA-----GAGAAATTACAGCCTACG--CCGTC------------------------ATA----AA----------CCGATGAATTATTGCGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541222 134 +  4147112 ggttt----tcctc-----ctttcttctgaa-ctac-----aaaaaatggagggGT----TGGCCGCCATACGGCCAAGTCGTACGAGAGTAgtagacaaa---aaaaacggacGGA-----GAAAAATTACA------G--CCGtc------------------------aaa----aa----------ccgaagaaatATTGCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  230695 101 -   375229 --ttt----ttttt-----attattcttcAA-TTCCgtccaaaaaaatgaa----------------------acaaaatcg-atgaaaa-gaaagaaata---agcATTG-----------CAGAAATTATA------A--CCTAT--------------------GAAGAGA----GA----------CCG--------------
i caeJap4.Scaffold17084 I 108 I 18

a score=922.000000
s ce10.chrX             4294638 4 + 17718866 AAAA
s cb4.chrX              9402834 4 + 21540570 AACA
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0  1252387 4 -  4500979 AGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    23495 4 +   386604 AGAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541356 4 +  4147112 GGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  230796 18 -   375229 I

a score=80.000000
s ce10.chrX             4294642 4 + 17718866 TTTC
s caeRem4.Crem_Contig0  1252391 4 -  4500979 CGTC
i caeRem4.Crem_Contig0  C 0 I 54
s caeSp111.Scaffold622    23499 4 +   386604 CTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541360 4 +  4147112 CGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  230796 18 -   375229 I
e cb4.chrX              9402838 53 + 21540570 I

a score=165.000000
s ce10.chrX             4294646 16 + 17718866 CATTCTCCGTTCTTTT
s caeSp111.Scaffold622    23503 15 +   386604 CTATAAACATACTTT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541364 15 +  4147112 CTATACACATATTTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  230796 18 -   375229 I
e cb4.chrX              9402838 53 + 21540570 I
e caeRem4.Crem_Contig0  1252395 54 -  4500979 I

a score=-3126.000000
s ce10.chrX             4294662 20 + 17718866 TTTTTTCCTTTTCGTATTCG
s caeSp111.Scaffold622    23518 10 +   386604 ----------GATGTATGAA
i caeSp111.Scaffold622  C 0 I 13
s caePb3.Scfld02_0      2541379 12 +  4147112 --------GAGATATATATG
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17084  230814 18 -   375229 TTCTTTCTTTTCCATGCC--
i caeJap4.Scaffold17084 I 18 C 0
e cb4.chrX              9402838 53 + 21540570 I
e caeRem4.Crem_Contig0  1252395 54 -  4500979 I

a score=0.000000
s ce10.chrX             4294682 9 + 17718866 AGGGGACAT
e caePb3.Scfld02_0      2541391 13 +  4147112 I
e caeJap4.Scaffold17084  230832 0 -   375229 C
e cb4.chrX              9402838 53 + 21540570 I
e caeSp111.Scaffold622    23528 13 +   386604 I
e caeRem4.Crem_Contig0  1252395 54 -  4500979 I

a score=-9691.000000
s ce10.chrX             4294691 28 + 17718866 TTCTGGATTCTTGGATGGGATAATGGAT
s cb4.chrX              9402891 10 + 21540570 tttag-------------gaaga-----
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0  1252449 16 -  4500979 TTcggaaaac-------agagaa-----
i caeRem4.Crem_Contig0  I 54 C 0
s caeSp111.Scaffold622    23541 15 +   386604 TTCAGT-TTC-------ACAAGA-----
i caeSp111.Scaffold622  I 13 C 0
s caePb3.Scfld02_0      2541404 21 +  4147112 TCCAATCTTC-------AAAAGATGGAA
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17084  230832 11 -   375229 -----------------GGACAATGAAT
i caeJap4.Scaffold17084 C 0 I 38

a score=-3420.000000
s ce10.chrX             4294719 69 + 17718866 GAGCCAATTTTAAAGTGTGGCTAAAGAAAA--------------ACTAGCCGTAAACAAAAAATAGTATACTC--------------------------AACAACTATC
s cb4.chrX              9402901 62 + 21540570 ---------------------gaaatcgaa--------------tatagaaagaaaatgaaaatagaaaacaataCTTTGTAACTCTTCTTACT------------ACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1252465 87 -  4500979 ---------------------aaaaatgaagagtgGGTTCATGGGATggaaggaaaacaaaaatagtatACTTTCGGATGCGATTTTCATTACTT-GAAGACCACCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    23556 84 +   386604 -----AATTGTGTTGTttg--aagacgaaa--------------aaagagaggaaaacaaGAGTTGTATACTTTCGGATGCGGTTTTCATGACTT----GAAGACTGGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541425 88 +  4147112 GG---AATAGCCTCAttc---agaatagaa--------------aatgaagagaaaacaaaaa-cgtaTACTTTTGGATGcgattttcttttccttcaagaCAGCCGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  230843 38 -   375229 I

a score=140507.000000
s ce10.chrX             4294788 488 + 17718866  
s cb4.chrX              9402963 472 + 21540570  
i cb4.chrX              C 0 I 2814
s caeRem4.Crem_Contig0  1252552 468 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 499
s caeSp111.Scaffold622    23640 444 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541513 466 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  230881 482 -   375229  
i caeJap4.Scaffold17084 I 38 C 0

a score=625.000000
s ce10.chrX             4295276 3 + 17718866 ATC
s caeSp111.Scaffold622    24084 3 +   386604 CCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2541979 3 +  4147112 CCC
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold17084  231363 3 -   375229 CTC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9403435 2814 + 21540570 I
e caeRem4.Crem_Contig0  1253020 499 -  4500979 I

a score=483.000000
s ce10.chrX             4295279 10 + 17718866 ATACTTTGTC
s caeSp111.Scaffold622    24087 10 +   386604 CCCGTTTCTC
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  231366 10 -   375229 ATATCTTCTC
i caeJap4.Scaffold17084 C 0 I 563
e caePb3.Scfld02_0      2541982 29 +  4147112 I
e cb4.chrX              9403435 2814 + 21540570 I
e caeRem4.Crem_Contig0  1253020 499 -  4500979 I

a score=-935.000000
s ce10.chrX             4295289 19 + 17718866 ATGTTATTTATATGAAACG
s caeSp111.Scaffold622    24097  4 +   386604 CTAC---------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2541982 29 +  4147112 I
e caeJap4.Scaffold17084  231376 563 -   375229 I
e cb4.chrX              9403435 2814 + 21540570 I
e caeRem4.Crem_Contig0  1253020 499 -  4500979 I

a score=-38447.000000
s ce10.chrX             4295308 763 + 17718866  
s caeSp111.Scaffold622    24101 455 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2542011 710 +  4147112  
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17084  231376 563 -   375229 I
e cb4.chrX              9403435 2814 + 21540570 I
e caeRem4.Crem_Contig0  1253020 499 -  4500979 I

a score=0.000000
s ce10.chrX             4296071 4 + 17718866 TTCA
e caePb3.Scfld02_0      2542721 0 +  4147112 C
e caeJap4.Scaffold17084  231376 563 -   375229 I
e cb4.chrX              9403435 2814 + 21540570 I
e caeSp111.Scaffold622    24556 0 +   386604 C
e caeRem4.Crem_Contig0  1253020 499 -  4500979 I

a score=-9090.000000
s ce10.chrX             4296075 122 + 17718866 AAACAGAAGCTGAGA--------CTAATTAGAAACAGACGGAAACGAGTGTAGAAACAA-------------AAATGCAATATATCTGATG-----AG--------------------ACAAACGACCAGAGAGAA--GGCTCAAGGTCTCACAAAAACTTCTGGATTTT---
s cb4.chrX              9406249 158 + 21540570 CAATAGAAGCAAAAAACCTGTTTCTAATT---AGCAAAAA-----ATGTAAAGGAAAAAGTAGGATTTGATGTAAAGCAAAGGATTTCGTT-----AGGGAGGATCGGccaggagcaaaaaaaaaccttcgaCACACCCGA--AGGCTCTCATAAAAACTTTTGGTTTGTGGC
i cb4.chrX              I 2814 C 0
s caeRem4.Crem_Contig0  1253519 136 -  4500979 AAACAGAGGCTGGGA----TTaattaatt---ggaaaaaagatacACATGTAGGAAAAA---------AGCGCAAAG--GAGGATTTCGTT-----AG---CTTTCTGTTAG--------AATAGATTCCAGAAAACTAGAACATGCTCTCATAAAAACTTTTGGTTCGT---
i caeRem4.Crem_Contig0  I 499 C 0
s caeSp111.Scaffold622    24556  90 +   386604 -------------------------AATTTGACGCAACAG---------------------------------------ATGGATTTCGTT-----AG------TCTGACAG--CCTCAGAAAAGGCAGGATGAAA---GCACTAGTTCTCATAAAAAACTTTCTGTCTT---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2542721 139 +  4147112 ----AGAATCTGGGA--------CTAATTAGTGGCAAGAGGATAGAAGTGTGAGTAGAA---------AACTAGAAGCAACGAATGCGATTTCGTGAG------GAGTATAG--TCGAATAAAAGCCACGAGAAAA--GGGGCAAGCTCtcataaaaaacttttggttcc---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  231376 563 -   375229 I

a score=93564.000000
s ce10.chrX             4296197 167 + 17718866 TTCCTGCACATTCTGAAACCA-GACATGCTGGAGTAGAA----GCCAGATTTCTAACGCTGTAAGAAAAAGTGG----CGACAGCGATAGG-------AGATTGCACGCATTATTGGTTTTGGGACGCGGA-----------TTTC----TGCGAAACGCTTGGATGCGC-------ACGGCTCATTTGCTAAATGAGATAATAG
s cb4.chrX              9406407 167 + 21540570 GTCGCTCGCATTCAGGAACCAGGATCTACTTGGGac---------------tcaaaa----agag-aaaagcaGGACCC--CAACGATAGGAGGGGAAAGATTGCACGCATTATTGGTTTTGGGACGGAGA-----------TTTTCTTGCGGAAAACGCTCGGATGCGC-----GTACGGCTCATTTGCTAAATGAGATAATAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1253655 147 -  4500979 TTTTCTCGCATTCAGAAGCCA-GATATATTCAGGAC-------------------AC----TGAG-AAAAGCAG----C--CAACGATAGG-------AGATTGCACGCATTATTGGTTTTGGGACAGAGA-----------TTTC----CGCAAAATGCTTGGATGCGC-----GCACGGCTCATTTGCTAAATGAGATAATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    24646 143 +   386604 GTTCGTGGCATTCAGAAGCCA-GCAATTCGGGAGTC-------------------------TGAG-AAAAGCAG----C--CAACGATAGG-------AGATTGCACGCATTATTGGTTTTGGGACGGAGA-----------TTTC----CGCGAAACGCTCGGATGCGC-------ACGGCTCATTTGCTAAATGAGATAATGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2542860 144 +  4147112 TTTCCTGGCATTCAGAAGCCG-GAGAATCTGAGGTC-------------------------CAAGAAAAAGCAG----C--CAACGATAGG-------AGATTGCACGCATTATTGGTTTTGGGACGGAGA-----------TTTC----CGCGAAACGCTCGGATGCGC-------ACGGCTCATTTGCTAAATGAGATAATGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  231939 183 -   375229 TTTTTGCTCGTCCAGATGTCA-GATATTTTGACAGAGAACATGGACGAACAACATAC----TAGGAGTCGGGAC----C--GGACGGGACG-------GGACGGGACGCCTTATTGGTTTTGGAGGATAAAGCTGCTTTTCTTTTT----CGCAAAACACTCGGATGCACAAAGAGCACAGCTCATTTGCCAAATGAGATAATGG
i caeJap4.Scaffold17084 I 563 I 4158

a score=1910.000000
s ce10.chrX             4296364 2 + 17718866 TG
s cb4.chrX              9406574 2 + 21540570 TG
i cb4.chrX              C 0 I 2144
s caeRem4.Crem_Contig0  1253802 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    24789 2 +   386604 TG
i caeSp111.Scaffold622  C 0 I 649
s caePb3.Scfld02_0      2543004 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 I 53
e caeJap4.Scaffold17084  232122 4158 -   375229 I

a score=-8040.000000
s ce10.chrX             4296366 116 + 17718866 -TGCTTCGTAGACATTGGAGCAGTTGAATGAAGTCACTTAGTACTAATCCAGTTGCTGAACAAGTGTTCGCTGAGATTTTGAACAACGATT------------GAAAGTATTTTGATATTTATT--------------------------------GTGCG------------------------
s caeRem4.Crem_Contig0  1253804  54 -  4500979 GTGGTCTAAAG--------------------------------------------------AAGAG--------------GAACCAGAATG----------AGAGAAACGTTCTGTT-TTTATT--------------------------------GAGTG------------------------
i caeRem4.Crem_Contig0  C 0 I 107
s caePb3.Scfld02_0      2543059 140 +  4147112 -CGCTTTAAAAACACTGGA------GAATGAA-----------------------TTGGGTAAAGG--------------gaactataattttttgttctcaaaaacatatttttct-tttcttattttttctgtcgaaGGGCGTAAAATCCAGAAGagcaaaatagaaaaagaagcagtCCGTG
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=-1230.000000
s ce10.chrX             4296482 128 + 17718866 GCATATTTATGAT-------------------AACTTTGAAATTGAAGTTCTAT-ACTAA------AAGTTAATTAATTTGAAAATTAATTAAAGAAAAATCAATTCAGGTTTTTTTAAAAGACATTTTTGAGAAGTCTCATTGTAAAATTTGG
s caePb3.Scfld02_0      2543199 115 +  4147112 GCATATGTGTGGTGCAGAAAACGGCGAGTATAAGCACTGAATATTAATTTTTGTCACTAATCCTCCAAGCCCATTAAAATGTAAAT--GCCCAAGATGAATATATAAA--------CAAAAGATA-----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I
e caeRem4.Crem_Contig0  1253858 107 -  4500979 I

a score=-3635.000000
s ce10.chrX             4296610 64 + 17718866 TTTTTATTGGAAAAATAAAAAGT--------GT---TCTAGTCCACCCTTAAACTTC--AATTTGAAAAAAAGAAAA-
s caeRem4.Crem_Contig0  1253965 38 -  4500979 -------------------------------ct---cttatttaGAGCGTAAAATCT--Agt---agaagaagcaaa-
i caeRem4.Crem_Contig0  I 107 I 79
s caePb3.Scfld02_0      2543314 68 +  4147112 -------TAGAAAAATAACCAAGTATGTGTACTCAACTTGTTTGGTGTGTAAGCTCCAAAAT---ATCATATGTAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=-519.000000
s ce10.chrX             4296674 86 + 17718866 GTTCAAACCTCGAATTAACCATTGTACTT----TCATCACGTGTTATAATTTTGTGCACTACTGCGTGAGCACGAAAAAAAAGGTTCTCA
s caePb3.Scfld02_0      2543382 63 +  4147112 ATCTAA---TCAGATT---TATTACACTTTTGCTCAGCTCGAGATTTGATTCTGTG-----------------GAGGAACAAGAGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I
e caeRem4.Crem_Contig0  1254003 79 -  4500979 I

a score=-1696.000000
s ce10.chrX             4296760 71 + 17718866 TTTATCCTTGGTCATTTATTAG---TCTATTAAGATGCTAAATTTGACGATGAATAGATAATCAAAATTGAACA------
s caeRem4.Crem_Contig0  1254082 75 -  4500979 tttgtcacTAATCCTTCACCATGAGCCCATTAAAATGCAAATTCTCAAGATGAAGATACATATAATAAACAAACA-----
i caeRem4.Crem_Contig0  I 79 I 176
s caePb3.Scfld02_0      2543445 63 +  4147112 TCAGTAATTTATAGTTTAGTAT-----------------AGTTGTAAAAGTGATACTAAATAcgatattgaaatttttgc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=242.000000
s ce10.chrX             4296831 80 + 17718866 GAATTTGAACTTTGAAAAAAAAAGTT---GTTACATAGTAAGAAAAGCTTACAATGTTGGTACACCCCGGCATTTTACAACTG
s caePb3.Scfld02_0      2543508 69 +  4147112 ---tttttactATGCTTCAAGAAGTTAAAAATTCAGAGTTGGGAAAGA--ATAATGTT---------CATCGTATCACAGTTG
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I
e caeRem4.Crem_Contig0  1254157 176 -  4500979 I

a score=0.000000
s ce10.chrX             4296911 37 + 17718866 GCATACGATTATTGatttaacattaatttaaattttt
e caePb3.Scfld02_0      2543577 20 +  4147112 I
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I
e caeRem4.Crem_Contig0  1254157 176 -  4500979 I

a score=115.000000
s ce10.chrX             4296948 99 + 17718866 attgcaaaaagatttttgtaattttgtaaatttcgcaaattacgttttaatcagacattaaaaaaataagaacagtcgattgatataaccggataacac
s caePb3.Scfld02_0      2543597 59 +  4147112 attccaaaaagaatttttctaaTGTGCAAAATTAGTA---------------------------------------CGGTCAAAATGACTAGTCAA-AC
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I
e caeRem4.Crem_Contig0  1254157 176 -  4500979 I

a score=-20489.000000
s ce10.chrX             4297047 403 + 17718866 caaaatgtcaaaattataatcagcgagcgggaatctaagattgactcattccgttcaaacttttttttgcaaaatggagaaaatcagttataaaaatcagaaaaaatcagaaaaaaaaagaatttttttgcagttatattgagtctgttttctgacatgtcaggtaaaaTACCACACGATACACCACGTTCAAATTCAGGTTGTCGATTAGGAACTTAGATTTTTGATC-----GGTACTTGTTTTCACACATCTAGTGCTTACTAAACTATATTTTCAAACGTTTT---CCTAACAATATTAGATGAAAAGAGTTTCATAATAAACT------CGGATTGAATAA---------TACACTT---------------------GACACGTT---------------TTTTTCAAAATGATACGTGCCTAATTCCCACTTGATGTCAACGTGGGTCTGAGCAA---
s caeRem4.Crem_Contig0  1254333 323 -  4500979 -------TAAACA------------ATTCAGAGTATAACCTACAATTAt---gttctactttttttct------------------tctcgagaaaacagacaaaattgatcaca--------ttttagaaagt-------------ttattga------------aaacatTACAC-ACCTGT----------------TTGCAAATAAAGTTATTCGATTCTGATTC-----ACTattccttgat------------------------tttttttagcaaaTCCGAACTatacagtaaaaaaaaacgatattATCGTAGGATTTCCAGAAGCGGATTGAGCTAGTCCGATAACACAATTTCAAATGCGTGGAAAATAGTGAATGAGGTCTCAGTGCATCTTAGTTCTGCGACTTGA---GTGTCTAC-------------TCAA----AGTCTTCGTAC---
i caeRem4.Crem_Contig0  I 176 I 5
s caePb3.Scfld02_0      2543656 341 +  4147112 ---CACGTGAACA-------CACTTATACgggg--aaattttgaaaaat---g---------------------------------tatctaAAAGAGCTACAAAAAAGATGGCAGAACGTATTTTTACGAAATCCGA--AATTACGTTTTCCG------------AAAtggtgctc-atttttcaatctcGTACTCCAGCCGAAAACTCGGAGATGCCATTTTCACttctccaaatattttttgattaa----ttatTCTTCCTAAG--ATCTTTTTAGATAACTT---CTCAATAGTATAGAGAGAGATGAATGTTGTACGAACCTTAGGAGTGTGAAGAAATA-------------------------------------AATGAGTTTTGCTagtattc---ttttgaaaattga---gtaaCCGCTGTC-----GACGTCCA----TGGCTTGGTAGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e cb4.chrX              9406576 2144 + 21540570 I
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=488.000000
s ce10.chrX             4297450 7 + 17718866 CAAATAT
s cb4.chrX              9408720 7 + 21540570 CAAGTAC
i cb4.chrX              I 2144 C 0
s caeRem4.Crem_Contig0  1254661 7 -  4500979 CTGGTAG
i caeRem4.Crem_Contig0  I 5 C 0
e caePb3.Scfld02_0      2543997 0 +  4147112 C
e caeJap4.Scaffold17084  232122 4158 -   375229 I
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=-3653.000000
s ce10.chrX             4297457 52 + 17718866 GCACGAAAGATGGAG---------AGGGTGAA--------AAGCGGC----------GGACAGAATGAATTTAGAAGTG---------
s cb4.chrX              9408727 41 + 21540570 TCACTAATAATTGAGA--TCGAACAAAGTGAA------------------------------AAGCGGCC---AAA------------
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1254668 52 -  4500979 GCACTAATAATTGAG-----GAACAGAATGAA--------AGAGGAG-----------AATGAATCGAGC---AAAGTG---------
i caeRem4.Crem_Contig0  C 0 I 29
s caePb3.Scfld02_0      2543997 50 +  4147112 ---CTAATAATTGAG-----GAACGGAGTGAA--------AAGGGGG----------CGACAGAATGAAT---GAAGTG---------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17084  236280 85 -   375229 GCACGAATGAAAGGGAAGGTAAGCAAAGCAAATCGATTAGAGTCGGGTTGCGTTGGTGGACAGAATGAAT---TAACTAAACGGGGCC
i caeJap4.Scaffold17084 I 4158 C 0
e caeSp111.Scaffold622    24791 649 +   386604 I

a score=92268.000000
s ce10.chrX             4297509 246 + 17718866 CCGGGTG--------------------------CAAACGTTGA----ATCTCACCTCTCGCAATCCACTTCCAATGAGTGCTTTTTGAT---TCGTCCATAAGTTT---------GTAA-AGAAATAAGCGGCGAGGAATACGATGACG------ACG-------TGAAT-CGGAGcacacacacacacactcacacacacacaAAGTGCTC------CCTCCTTCGA------TGGGG----------TCCTTCTT---TTCTTCTCC--GTG---CCTGCGTCGCGCCTCTGTTTATGGCCGTGTTTCA-TTTTTTATTCATCTGGGAATTG
s cb4.chrX              9408778 250 + 21540570 --GGACc------------------------acaaaaccttttttcattctcacCTTTTCCGAACCACTCCCAATGAGTGCTTTTTGATTTGTCGTCCAtaagtttttttcagtagTAGCAAAAATGGGTGCAGTAGA--------ACA------AAGACACGACAGAAC-C-GAGTAGA-----------------ACCGAGAG-----------------CTCTAACGTGAAAAAGACGGACCTCCTCCatttccttctcttcttccttATG---CCTGCGTCG----TCTGTTTATGg-catgtttcatttttttattcatctgGGAATTG
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0  1254749 231 -  4500979 --AGGGG------------------------TCCAAACGTTTT----ATCTCACCTCTCTCAATCCACTTCCAATGAGTGCTTTTTGAT---TCGTCCATAAGTTT---------GTAG-AGAAATAGGCAAAG---------------------ACGACGTGGTTGAAT-CGGAGCACG-----------------ACCAAAAGAGTGCTCAACGTTTCTTCTCCGACGTGAGCAGGA----------Ccctttcctcgttttttttc--gtg---CCTGCGTCG----TATGTTTATGG-cgtgtttca-ttttttattcatctgGGAATTG
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold622    25440 224 +   386604 CCAGGGG--------------------------CAAACGTTTT----ATCTCACCTCTTTCAATCCACTTCCAATGAGTGCTTTTTGAT---TCGTCCATAAGTTT---------GTCG-AGGAATAAGCAGAAACTACGACGGCGGCGACAGGAGCAACGTGGTTGAAT-CGGAGCACA-----------------------AAATTGCTC-------CTTTTCCG-------CCGGA----------CCC--------TTTTCCTTC--ATG---CCTGCGTCG----TCGGTTTATGG-cgtgtttca-ttttttattcatctgGGAATTG
i caeSp111.Scaffold622  I 649 C 0
s caePb3.Scfld02_0      2544058 260 +  4147112 --AGGGACGGACTCGACGACGAAGAAGACGGACCAAACGTTTT----ATCTCACCTCTTTCAATCCACTTCCAATGAGTGCTTTTTGAT---TCGTCCATAAGTTT---------GTTG-AGAAATAAGCAGCAGCGACAACGAAGACG------GCGACTTGGTTGAATCCGGAGCACA----------------------GAAAGTGCTCAACG--TCTTCTCCGGGGCGATTGGGA----------CCC-------ATTTTCTTTC--ATGCCTCCTGCGTCG----TCTGTTTATgg-cgtgtttca-ttttttattcatctgGGAATTG
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17084  236365 209 -   375229 -----------------------CTAGTCAGAGCAAAATTCTT----CTCTCACCTCTTTCAATCCACTTCCAAAAAGTGCTTTTTGAT---TTGTCCATAAGTT----------GTGG-GCGAATAGACAAAA--GAGTTCGGTCAGA------GCG-----GTTGAAA---AGGCACA-----------------AGGACGTGTGTGCTT------GCTTCTCCTC------GATGA----------AGC--------TCGTTTCTC--TTG---TCTGCGTCG----tctgt-----------tttca-ttttttattcatcTGGGAATTG
i caeJap4.Scaffold17084 C 0 I 1676

a score=1642.000000
s ce10.chrX             4297755 36 + 17718866 C---------AGCGATGTTTTAGTATATAGCAAGAACTTGCATAG----
s cb4.chrX              9409028 25 + 21540570 TAGGAGCCACTACAAGAttttattg------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1254980 43 -  4500979 T--GAACCGCAACGAAGTTTTAGTTTACCGCAACAACTCGCGCAG----
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold622    25664 47 +   386604 T--GGACGGCTACAAAGTTTTAGTTTACCGCAACTGCTTTTCCGAGTTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2544318 43 +  4147112 T--GGACGGCAACAAAGTTTTAGTTTACCGCTACtacttcttc----tg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  236574 1676 -   375229 I

a score=-1014.000000
s ce10.chrX             4297791 2 + 17718866 AA--
s cb4.chrX              9409053 2 + 21540570 --tt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    25711 2 +   386604 AA--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2544361 2 +  4147112 aa--
i caePb3.Scfld02_0      C 0 I 101
e caeJap4.Scaffold17084  236574 1676 -   375229 I
e caeRem4.Crem_Contig0  1255023 36 -  4500979 I

a score=-1231.000000
s ce10.chrX             4297793 37 + 17718866 CTTGATATTCAAAGAAA-----AAC-------------ATGAAAACAAAAAACAA
s cb4.chrX              9409055 50 + 21540570 gttgttgtccATTGAAACCCActactatttttttctgaaagaagacaagg-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    25713 37 +   386604 ---GTCGAGCACTAAAA-----Tatgat----------gagaaaacaaaaaaaag
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2544363 101 +  4147112 I
e caeJap4.Scaffold17084  236574 1676 -   375229 I
e caeRem4.Crem_Contig0  1255023 36 -  4500979 I

a score=-29.000000
s ce10.chrX             4297830 41 + 17718866 AAAAAAAGAACGAAAGATAATGTTT-ATAATATTTAGTATCC---
s cb4.chrX              9409105 42 + 21540570 aaaaaatctacagtaaatCATTTTTATTGAGAGTTTTGAGCA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1255059 36 -  4500979 --------tgaaaaagaacatgttt-tttagaatttttgttattc
i caeRem4.Crem_Contig0  I 36 I 23
s caeSp111.Scaffold622    25750 33 +   386604 --------aatagaaaaacatgTTT-ATCTGAGTTGGTATCC---
i caeSp111.Scaffold622  C 0 I 11
e caePb3.Scfld02_0      2544363 101 +  4147112 I
e caeJap4.Scaffold17084  236574 1676 -   375229 I

a score=-3497.000000
s ce10.chrX             4297871 21 + 17718866 ATCTGTAAAA------GTCTGACAAAC-
s cb4.chrX              9409147 23 + 21540570 ATCCGTTTCA-----GTTTAAAATCGAA
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold622    25794 25 +   386604 --CTGTTTTATGGGCATTCATAATGAC-
i caeSp111.Scaffold622  I 11 C 0
s caePb3.Scfld02_0      2544464 25 +  4147112 --ACATATAAAGGGGGTTCTGACTAGC-
i caePb3.Scfld02_0      I 101 C 0
e caeJap4.Scaffold17084  236574 1676 -   375229 I
e caeRem4.Crem_Contig0  1255095 23 -  4500979 I

a score=-49741.000000
s ce10.chrX             4297892 199 + 17718866 AATGGGAAAA--AAATACACGAAGTTGAAAT--------------AAT-------------GAAAAGAAAATCTTGA---------------GACTAGTGGGTAGGAA----------AAAATATTTTT----AAAAC------ATCACAAATCGCTGGCATATTCAAAAT-GA--GATGACAATGAAGATCAGTGCAAA---ATAAT-------------TTTAAAAAA----------------------ACGTAGAGTT-------ATAATAATTTATGACAAA--------------------AAGT-----TAAGCAGATCCAGCTGCTGA
s cb4.chrX              9409174 252 + 21540570 GGAGACAATGACCAATACGC---GTTGTTAA----GTGGTTATA-GACTAG--------------TGGGGGTTAGAA---------------GGAAAGAACATGGTTATC--------ATGAAAGCGGt----gattagaaattttta------acaaGATT---AGAAAT-AAAGGATGAC---------TTGAATAAATCTATCACAATACACAGGGAgttcaaaaagtgagaatcTTGGGc--------cagtaaaaata------aaaatagaaaacaaaatatatAACAAGatcaaactttgaaat--gtATAAGCAGGACCAGCTGCTGA
i cb4.chrX              I 4 I 91
s caeRem4.Crem_Contig0  1255118 286 -  4500979 GATGACAATA--TAGTACAC---GATTAGAAAGTTGTGGCTGTATGACTAGGAAAgcatgaaaaatgataaatatga---------------gggcagaaaatagaaatttttgacaaatgaAAATGGcttggaaagaaaaagtatcACATAGCACAGgtat---aaaaat-ga--gatttc---------taGATTGAA---ATAAGAGCACA-------TTTAGAAAACGAACTAATTAGGCAGAACCAGCTGCAGGGGTGTCCACTGGGGTAGTTACTGAAGCA-GTAACAGGGGTATTCAT--AAGT--TTGGAAATAAGATCAGTGACAGA
i caeRem4.Crem_Contig0  I 23 I 18
s caeSp111.Scaffold622    25819 202 +   386604 AATGACAGTA--TA----GC---GTTAAAAT----GAGGGTttg-gaaca-----------aaaatgatATATATGACAAAGCGATTAGTAGGGGTTAATAATATAAA----TATGGCATCATAGTGTT----AAT--------ATCACATAC-ACAGGGAT-TCCGAAAT-GA--GAT------------------------GTTAG-------------T---GAGAA-------ATTCGac--------agataa-----------aaaataattgacaAAATA--------------------ATAT--GATCAAGCAGATCCAGCTGCCTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2544489 174 +  4147112 AGTGAC------------------TTTAAAT------------------------------AAAATGATAAACATGA----------GGGTGGagcaaataataaaaatttgtatGGCATC-TTGTTTT----AATGA------ATCACATTC-ACAGGGTT-GGGGAAATAAA--Gat------------------------atcaa-------------tttggaaaa-------agtataT--------GTGTAC-----------ATGtta------taaata--------------------attttgagttaGGCAGATCCAGCTGCCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  236574 1676 -   375229 I

a score=-3157.000000
s ce10.chrX             4298091 25 + 17718866 ------------------------------CAAATTCACAGTACCCGTACTACTT
s caeRem4.Crem_Contig0  1255422 55 -  4500979 CAAAGTATCAGAAACATTGATGGTAGAATTTCCATCCACAGATCCAGCTGCGCTC
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold622    26021 25 +   386604 ------------------------------TTCTGTCGATGACCCGGTTGAGGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2544663 25 +  4147112 ------------------------------TTCAATTACAggttcttctgttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  236574 1676 -   375229 I
e cb4.chrX              9409426 91 + 21540570 I

a score=1359.000000
s ce10.chrX             4298116 5 + 17718866 TCCGA
s caeRem4.Crem_Contig0  1255477 5 -  4500979 tttcg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    26046 5 +   386604 TCCAG
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0      2544688 5 +  4147112 tctgg
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  238250 5 -   375229 TCCTG
i caeJap4.Scaffold17084 I 1676 C 0
e cb4.chrX              9409426 91 + 21540570 I

a score=88644.000000
s ce10.chrX             4298121 210 + 17718866 CTTCTCCTTTTCCAACCGTTTTTGCTCCTTTTTTGCAGCCTTTCGAGCAAGTTTCTCCTGAAGTTTAGCGTCGTCCTCCTG---TT------CCTCTTTTTGACGCTTCAGGCGTTTTGCTTCTTTTCGAGCACGACGCTCCTCTTCAGTTTCATCTTCACGGGACTTCTTCTTGTGctccttatccttgtcctta---------tctttgtgcttctccttctcttt
s cb4.chrX              9409517 204 + 21540570 CTGCTCCTTGGCAAGACGTTTCAGCTCTTTTTTAGCAGCTTTCTTGGCAGCTTTCTCTTGTCGCTTCACATCATCATCTTTGTCTC------CTTCGGCCTCTTTCTTCAGACGCTTTGCTTCCTTCCGTGCACGACGTTCCTCTTCAGTTTCACCTTCATGGGActttctcttgtgctccttgtgctctttgtgc---------tccttatgctcttt---------
i cb4.chrX              I 91 C 0
s caeRem4.Crem_Contig0  1255482 210 -  4500979 tttctgtttttcagcacgtttttcctcttttcgtgctgcttttcgggcaagtttttcttcgcgttttGCATCATCGGTCTT---TC------CTTCTGATTCACGTTTCAGACGTTTAGcttcctttcgtgcacggcgttcttcttcagtttcaccttcacgagctttcttcttttcttccttgtgacgtttcttc---------tcctcgggatccttctttttctt
i caeRem4.Crem_Contig0  C 0 I 2002
s caeSp111.Scaffold622    26057 228 +   386604 TTTCTCCTTATCCAACCGTTTTTGTTCTTTGCGAGCCGCTTTTCTAGCAAGTTTCTCCTGACGCTTAGCATCATCGTCTGGGACTTCTTGGCCTTCCGCTTGACGTTTCAGCCgttttgcttcttttctaGCACGACGCTCTTCTTCAGTTTCACCTTCACGAGActttctcttgtgctccttgtgctccttgctctgcttcttttctttgtgctccttatgcttttt
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2544696 210 +  4147112 T---TCTTTTGACAAGCGTTGTTGTTCTTTGCGAGCTGCTTTCCTTGCAGCTTTTTCCTGGCGCTTACTTTGTTCAGATTGgcctt------cttttgcttctttcttCAGACGTTTAGCTTCTTTTCTTAGAAGACGCTCCTCTTCAGTTTCACCTTCATGAGATTTCCGCTTGAGCTCCCTGCGTTCTTTTCGA---------TCTTTGTggtctcgatttttctt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  238255 159 -   375229 CCGTTCCTTCTCCAACCGTCTCGCCTCTTTACGAGc--ctt----------tttctcctcttttctagccttttcctccaa---tt------cttctagtcgcttcttctccttcttggCAGCTTTTCGAGAGCGGCGCTCCTCGTCAGTTTCGTTTTCTCGaaccttcttctt---ctcttt---------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-1524.000000
s ce10.chrX             4298331 13 + 17718866 acctttgtcctct
s cb4.chrX              9409721  1 + 21540570 ------------t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    26285  9 +   386604 ----gtgctcttt
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0      2544906  9 +  4147112 ----gcgTCCTTT
i caePb3.Scfld02_0      C 0 I 1108
s caeJap4.Scaffold17084  238414  8 -   375229 -----aCTCCTCT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=-9054.000000
s ce10.chrX             4298344  32 + 17718866 tcctttt--------------------------------------ccttttcc-----------------------------------------------------ttgtctttttctttttc
s cb4.chrX              9409722  32 + 21540570 ttcttct--------------------------------------tcttttcc-----------------------------------------------------ttgaCGTCTGCATGTTC
i cb4.chrX              C 0 I 1293
s caeSp111.Scaffold622    26301 123 +   386604 ttcttctctgcGGAATCCAATTCAGACCCAGATTTTGGAGTAGAATCCGTTCCAGGCGTCAGATCCAATTTTGGAGTAAACTCCTTTTTGGGTGTAGAATCCATTTTTGGAGTTTGATCTTTC
i caeSp111.Scaffold622  I 7 C 0
s caeJap4.Scaffold17084  238422  13 -   375229 ------------------------------------------CAATATCTTCC-----------------------------------------------------TC---------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=-5834.000000
s ce10.chrX             4298376 100 + 17718866 tttAT-GTGGC-TCCTTTTTA---------TCTTTTTTCG---------AACCATC---AGTCTCCTGACTGGGCATATTGAACTTAACATTCAACTTGAGTTT-----------------GATCGGAGGGTGATTTTTA
s caeSp111.Scaffold622    26424 137 +   386604 TTTGGAGTGGAATCCTTTTTAGGCTCAGCATCTTTTTTAGC---ATCAAGACTATCCGGAGTTTTCGGAGGAAGAGTAGGTAACTTGAAAGTTAATTTCAGCTTCAATGGCGGCTTGGCGGGTTCAGAAGACGATGTTGA
i caeSp111.Scaffold622  C 0 I 118
s caeJap4.Scaffold17084  238435  82 -   375229 -------------------------------CGTGCGAGGCGGAATCGAAAACACTTG-ATTCTGCTG---------ATTGAATCGAACATTGAGCTTAATTTTGAGAGGTGTTT------GATCGGAA-----------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e cb4.chrX              9409754 1293 + 21540570 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=91.000000
s ce10.chrX             4298476 58 + 17718866 TCTTCATTCGCTGCTAATGATATGGAAGGTTGACCCTGTCCAATTCGAATCTTCATCG
s caeJap4.Scaffold17084  238517 33 -   375229 CTTTCACTC-----------------AAGTTAA--------GAGTCGAGTCTTTGTCA
i caeJap4.Scaffold17084 C 0 I 21
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e cb4.chrX              9409754 1293 + 21540570 I
e caeSp111.Scaffold622    26561 118 +   386604 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=0.000000
s ce10.chrX             4298534 20 + 17718866 GAGACTTTTCCTTGTCTACA
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e caeJap4.Scaffold17084  238550 21 -   375229 I
e cb4.chrX              9409754 1293 + 21540570 I
e caeSp111.Scaffold622    26561 118 +   386604 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=138.000000
s ce10.chrX             4298554 35 + 17718866 CTCAAAGGTGATCCCTCTC------------GCAGCTTTAATGCCGA
s caeSp111.Scaffold622    26679 47 +   386604 TTCAATGATGAACTCTTGTCATGCTTATGATGGGACTTCGATGGAGA
i caeSp111.Scaffold622  I 118 C 0
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e caeJap4.Scaffold17084  238550 21 -   375229 I
e cb4.chrX              9409754 1293 + 21540570 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=-713.000000
s ce10.chrX             4298589 4 + 17718866 ATCA--
s cb4.chrX              9411047 4 + 21540570 atct--
i cb4.chrX              I 1293 I 3
s caeSp111.Scaffold622    26726 4 +   386604 --CTCC
i caeSp111.Scaffold622  C 0 I 9
e caePb3.Scfld02_0      2544915 1108 +  4147112 I
e caeJap4.Scaffold17084  238550 21 -   375229 I
e caeRem4.Crem_Contig0  1255692 2002 -  4500979 I

a score=1320.000000
s ce10.chrX             4298593 3 + 17718866 CTA
s cb4.chrX              9411054 3 + 21540570 tca
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1257694 3 -  4500979 CTA
i caeRem4.Crem_Contig0  I 2002 C 0
s caeSp111.Scaffold622    26739 3 +   386604 CTG
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0      2546023 3 +  4147112 CTA
i caePb3.Scfld02_0      I 1108 C 0
e caeJap4.Scaffold17084  238550 21 -   375229 I

a score=-71378.000000
s ce10.chrX             4298596 452 + 17718866  
s cb4.chrX              9411057 437 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1257697 422 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    26742 761 +   386604  
i caeSp111.Scaffold622  C 0 I 94
s caePb3.Scfld02_0      2546026 422 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  238571 344 -   375229  
i caeJap4.Scaffold17084 I 21 C 0

a score=-24941.000000
s ce10.chrX             4299048 79 + 17718866 TACATCATC---AACC--TTG-----------ATATCTTTTTGTGTATCGCATGATGATTCTAAACTGATTGACACTGA-----------AGATGGTCCGGGCTGT
s cb4.chrX              9411497 34 + 21540570 AGCGTCATC---AGCC--ttt------------------------------------------------------ttca-------------gtgtttcagaTGTC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1258122 84 -  4500979 TACATCTTCTGGAGCT--TTTGATGCAGACA-CTGCTTTTGG--TGGTGGAGCAGAAGTGCTGGGT--GT--AGACTCA-------------GTATGTCGAATTTC
i caeRem4.Crem_Contig0  I 3 I 16
s caePb3.Scfld02_0      2546448 91 +  4147112 TTCTTCTCCCACTGCCGGTTTCTCAAGGGTAGATACTTTAGGCTCGACggaatgaacattttgagt--aTCCGGTTTGA-------------TTGTTACTGGTTTG
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  238915 31 -   375229 ---------------------------------------------------------------------------TTGACCGGAAGTAGAAGGGGTCTCTGGTTCC
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    27503 94 +   386604 I

a score=1192.000000
s ce10.chrX             4299127 56 + 17718866 GCAGGATTTGGCTCTTCT---TCAGTTCTTGCCGAAGTCGTATCATCCTCGTCGAACAG
s cb4.chrX              9411531 59 + 21540570 GCAGAAGTCGACTGGCTCTCTTCTGGTTTGGATGATGTGTCATCGTCACTTTCAAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1258222 59 -  4500979 GCGACATCCGGTTTATGTGCATCAGGTTTGGCAGGTGCAGCATCATCTCCGTCGAAGAG
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold622    27597 56 +   386604 ACTGCATCTTGCTTTTTC---TCCTGTTTTGATGCAGACACATCTTCACCGTCGAACAA
i caeSp111.Scaffold622  I 94 I 3040
s caePb3.Scfld02_0      2546543 43 +  4147112 --CGGAAGTTGCT--------TCTTGCTTGGAT---GGTTCATCTgca---tcgaaaag
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  238946 56 -   375229 ---GTTTCCTTTTCTTCTGGCTCTGGTCTTACTTCATTTGGATCCTTTCCATCGAGTAG
i caeJap4.Scaffold17084 C 0 C 0

a score=88683.000000
s ce10.chrX             4299183 272 + 17718866 TTTTTCCAGAAACTTATCATCCGACATTGTATCAGCAGAGTAGTCAACCTTAAAGTAAGATATGTGATAAATGTATCTT-------CTGGG--CTTTAAAA----------TACCTCTCTTCTTGTCCTCCTT-------GATCCAGGC--ATGACTTCCAAGTAAGGAACTCGACCTTCTTCTTTAGCCTTTTCAATGTAATCCGTCTCGTCAGCAGCTCGCAAAATGTCTCTTGGAATCTCATCTTCTCCAACTAGTCTGGGTTTTC---TATAAAA---AAAAATTTGAAATCATATTTTTAT
s cb4.chrX              9411590 278 + 21540570 TTTCTCAAGGAACTTATCATCGGACATTGTGTCGGTAGAGTAGTCGACCTGAAAATGCCTCAA--AATGATTAtttatt----caactttt--ttttataacg--------CACCTCTTTTCTCGCCCTTCTG-------GACCCAGGC--ATGACTTCCAGGTAAGCAACACGGCCCTCCTCTTTGGCCTTCTCAATGTAGTCGGTCTCATCGGCAGCGCGAAGAATGTCCTTTGGAATTTCGTCCTGACCACACAAACGAGGCTTTC---TAAAAAATGGATTaatgtaaaatgttaattttaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1258281 275 -  4500979 TTTTTCCAAGAACCTGTCATCAGACATTGTGTCAGTGGAGTAGTCAACCTGCAAAGAATTT----CATTGATAATTAtt----cgactgaa--attgaaaact--------aaccTCTTTTCTGGTTCTTCTC-------GATCCAGGC--ATCACCTCGAGGTAAGGAACACGACCCTCCTCTTTAGCTTTTTCGATGTAATCAGTTTCATCAGCAGCTCGAAGAATGTCTCTTGGAATTTCATCATCACCGCACAAGCGAGGTTTGC---TGAAATGTCTTATGATGAGAAGT-TTAGATTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  3255022 260 - 33334924 TTGTTGCATGAATTGCTCATCGCTCATCAGATCAGAAGAGTAGTCAACCTGGA------------AATCAATACAAATTT--AGAATTGAA-GATTCATATTTCATCTCATTACCTCCTTTCTACGTCTTCTTTGATTTGGAGTCTGATCAAcgatttct-----ctt-------ccttcctcCTTTGCCTTTTCGATCTCTTCAAAATCGAAAGATAACTTGACAATATCCTCTGGAATCTCTTGTTCCTCAAGAAGACGTGGCTTCC---GATGCAATTGATTTGCCT----------------
i caeSp111.Scaffold629  n 3040 C 0
s caePb3.Scfld02_0      2546586 282 +  4147112 tttttccaaaaacttgtcGTCCGACATGGTGTCAGTGGAATAGTCAAcctgaaatgagaaagatgAATCAACATGAACT----GATGTGACTGATTGATG-----------TAcctcttttctgtttcttctt-------gaTCCAGGT--AAGACTTCCAGATGCGTAACAAGACCTTCCTCTTTAGCTTTCTCAATGTAGTCAGTCTCATCTGCAGCTCTTAAAATGTCTTTCGGAATCTCATCGTCACCACACAAAcgaggttttctgaaaaatcatcattttgtttGGAGTTCTGAGTATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  239002 262 -   375229 GGTCTCCAAAAACTTGTCATCAGACATGGTGTCACCGGAATAGTTGAcctgtaaa----------cattttttaaaactggaaaaattctg--atttaTGTTTT-------TACCTCCTTTCTTTTCCTTCTA-------GATCCAGGA--ATAACTTCCAGATATGCGACACGTCCTTCTTCTCTGGCCTTCTCTTGGTATTCAGTCTCATCGGAAGCTCGAAGGATGTCTTTGGGAATTTCGTTGTCGCCTACTAGCCTGggtttactgaaaaaaaatttatttttgt----------------
i caeJap4.Scaffold17084 C 0 I 17

a score=-5073.000000
s ce10.chrX             4299455 30 + 17718866 ACTCATCTATTTATAGTCATGCAGATTTTT
s cb4.chrX              9411868  5 + 21540570 AAGT-------------------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1258556 10 -  4500979 AAACATCCA--------------------A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2546868  5 +  4147112 TGAT-------------------------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  239264 17 -   375229 I
e caeSp111.Scaffold629  3255282  0 - 33334924 C

a score=435560.000000
s ce10.chrX             4299485 739 + 17718866  
s cb4.chrX              9411873 767 + 21540570  
i cb4.chrX              C 0 I 68
s caeRem4.Crem_Contig0  1258566 835 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 44
s caeSp111.Scaffold629  3255282 668 - 33334924  
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_0      2546873 894 +  4147112  
i caePb3.Scfld02_0      C 0 I 41
s caeJap4.Scaffold17084  239281 739 -   375229  
i caeJap4.Scaffold17084 I 17 C 0

a score=0.000000
s ce10.chrX             4300224 62 + 17718866 TTTTAGATTTTAAATTTACATAGGTAACCACAAAATTAAATTCTCATTTACCAGACAAAAAT
e caePb3.Scfld02_0      2547767 41 +  4147112 I
e caeJap4.Scaffold17084  240020  0 -   375229 C
e cb4.chrX              9412640 68 + 21540570 I
e caeSp111.Scaffold629  3255950 12 - 33334924 I
e caeRem4.Crem_Contig0  1259401 44 -  4500979 I

a score=327166.000000
s ce10.chrX             4300286 444 + 17718866 ACTTACGCAGATATAAATCGAGCATCCCAAAAATTTCTACAAGACTCCTCCACATTTTCAAAAAGGAACGGATGGTTGCAAAGTTTCCGGAGATGAATCATCGTGTTCCTCAGCGATTTACTTCCCGTATTGGTCTTTCCATCAAGAAGCAACCCCTTCTGCATATGCTTGTAAAGAACTTTTTGAAGCGCCGACATGTCACATCTGACAACAAATTCCATTTTATCCGGTAGTTCCGACTC---------------------------------------------------GACTTCCTTCTTCAATCGTCTAAGCAAAAACGGTCTCAAAACTTTGTGAAGTCGGCGAATGATGAGCATGGTTTCCTCTTGTGTGAGTTCGACTTTTTCGCCAGTTGTGGCAAATGGTGCATTGAACCATTGCTCGAAGGTCGAACATGATGAGAAAATGGATGGAAGCAGGAAGTTCAGTAGAGCCCATAACTCCGGTAGC
s cb4.chrX              9412708 443 + 21540570 ACTCACGCTGAGATGAATTGTGACTTCCAGAAACTCTTGCAGGAATCCTCCACATTCTCAAAAAGGAACGGATGATTACACAATTTACGGAGGTGCACCATGGTGTTCATCAATGAACGACTTCCAGTATTGGTCTTCCCGTCCAGAAGAAGACCCTTTTGCATATGCTTGTAAAGAACTTTCTGGAGTGCAGACATCTCACACTTGATAACAAACTCCATCTTGTCAGGCAACTCGGATTC----------------------------------------------------AACTTCTTTTTGAGTCTTCTCAACAAAAATGGTCGGAGAACTTTGTGAAGGCGTCGAATGATAAGCATGGTCTCTTCAGACGTCAATTCAACCTTCTCCCCGGATGTTTGGAATGGGGCATTGAACCATTGCTCAAAACTGGCGCATGATTGGAAAATGGATGGAAGTAGGAAATTAAGAAGAGCCCACAGCTCGGgtaac
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig0  1259445 495 -  4500979 ACTTACGCTGTGATGAACTTGGAGTTCCAGAAGCTCTTGCAAGAATCTTCGACATTATTGAAAAGGAATGGGTGATTACACAATTTGCGGAGATGTACCATTGTGTTCATGAGTGAACGACTGCCGGTGTTAGTCTTGCCATCGAGAAGAAGTCCTTTCTGCATATGCTTGTAGAGCACTTTTTGCAATCCAGACATCTCACACTTGACGACAAACTCCATTTTATCCGGCAACTCTGATTCCACCTGAAAATCATacaagttgacaatttttccagttttgaacGGGTAATTTACCTCTTTCTTCAATCTTCGAAGCAAGAATGGTCTCAAAACTTTGTGAAGACGTCGAATGATGAGCATTGTCTCTTCTGAAGTCAACTCGACCTTCTCGCCGGTTTTTTCGAATGGAGCATTGAACCATTGTTCAAATGTTGAGCACGATGAGAAGATGGTTGGGAGCAAGAAATTGAGAAGGGCCCATAGTTCTGGGAGC
i caeRem4.Crem_Contig0  I 44 C 0
s caeSp111.Scaffold629  3255962 423 - 33334924 ----------------ACTTT-----CCAGTGAGCACGGCAAGAGTCTTCAATGTTTTGGAAGAGGAAAGGATGGTTACAGAGCTTTCGAAGGTGAACAATAGTGTTCGAAAGGGAACGAGCACCAGCTGAAGCGGTTCCGTCGAGGAGAATTCCCCTTTTCATGTGACGATAGATAACCTTTTGAAGGGCAGACATATCACATTTGATAACATATTCCGTCTTATCCGGCAATTCTGATTC---------------------------------------------------GACTTCTTTCTTGAGACGTCTCAAAAGGAATGGACGAAGAACCTTGTGCAATCTTCTAATGATAAGCATAGTTTCTTCTTGATTcaattccactttttctccgGTAGTGGCAAATGGAGCATTGAACCATTGTTCAAAAGTGTCACAGGATGAGAAGATCGATGGGAGTAGGAAGTTGAGAAGAGCCCACAACTCTGGAAGT
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0      2547808 491 +  4147112 ACTTACGCTGAGATGTACTTTGAGTCCCAGTAGATTCTGCACGAATCTTCAACATTCTCAAAAAGGAATGGGTGATTACAAAGTTTGCGGAGGTGAACCATGGTGTTCATCAACGACCGACTTCCGGTGTTCGTCTTTCCATCGAGGAGTAAACCTTTCTGCATATGCTTATAGAGAACCTTCTGAAGACCTGACATTTCACACTTGATCACGAACTCCATCTTGTCAGGCAACTCGGATTCTACctggaaactcaaaatctacATATTTTTC----TATTACTTCGATAGCATACCTCTTTCTTCAGTCTTCTGAGCAAGAATGGTCTGAGAACTTTGTGAAGACGTCGAATAATGAGCATAGTTTCCTCTGATGTCAGCTCCACTTTCTCTCCAGTAGTTGCAAATGGTGCGTTGAACCATTGCTCAAAGGATGAGcatgaagagaaaatggacggaagaaggaaattgagaagcgCCCAGAGTTCCggtaac
i caePb3.Scfld02_0      I 41 C 0
s caeJap4.Scaffold17084  240020 437 -   375229 -------CAGTAATGTATTTGACATCCCAAAAAGTGCGGCACGAGTCTTCCACATTGTTGAATAGGAATGGATGGTTGCAAAGCTTTCTCAGATGAACCATCGAATTCATTAGTGAACGACTTCCAGTATTCTGTTTCCCGTCAAGGAGAAGACCCTTTTGCATGTGTTTGTAGAGCACTTTTTGAAGAGCAGACATTTCGCACTTGATGACAAACTCCATTTTGTCCGGCAACTCAGATTC---------------------------------------------------CACCTCTTTTTTCAACCTTCTTAGGAGGAAGGGCCGAAGAACTTTGTGAAGACGTCGGATAATGAGCATAGTTTCTTCTTGAGTCAACTCTACTTTTTCGCCAGTGGTTGCGAAGGGTGCGTTGAACCACTGTTCAAATGTTGTGCATGATGAGAAAATAGAGGGGAGCAGGAAATTGAGAAGAGCCCATAGTTCCGgcagc
i caeJap4.Scaffold17084 C 0 C 0

a score=4171.000000
s ce10.chrX             4300730 6 + 17718866 TGTAAA
s cb4.chrX              9413151 6 + 21540570 tgaaaa
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1259940 6 -  4500979 TGcaaa
i caeRem4.Crem_Contig0  C 0 I 38
s caePb3.Scfld02_0      2548299 6 +  4147112 tgaaaa
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17084  240457 6 -   375229 tgaaaa
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold629  3256385 0 - 33334924 C

a score=0.000000
s ce10.chrX             4300736 3 + 17718866 TAA
e caePb3.Scfld02_0      2548305 32 +  4147112 I
e caeJap4.Scaffold17084  240463 0 -   375229 C
e cb4.chrX              9413157 3 + 21540570 I
e caeSp111.Scaffold629  3256385 0 - 33334924 C
e caeRem4.Crem_Contig0  1259946 38 -  4500979 I

a score=-198.000000
s ce10.chrX             4300739 14 + 17718866 TGTTTCTAATTATT
s cb4.chrX              9413160  9 + 21540570 ta-----aattatt
i cb4.chrX              I 3 I 29
s caeJap4.Scaffold17084  240463 10 -   375229 ----tttgaaaatt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2548305 32 +  4147112 I
e caeSp111.Scaffold629  3256385  0 - 33334924 C
e caeRem4.Crem_Contig0  1259946 38 -  4500979 I

a score=-1783.000000
s ce10.chrX             4300753 245 + 17718866 TAGAGGGA------------------GGGTATTGTCAGTCGTAAGGTGCTTATGTAACT---AAATAGGTTTATT-------ATTATTTTCTTAATTTTCTTCTCAGTATTTTTA--------------------------------------------------TTTACAGTCAAAAAGTTACAATT---AAGTCGATCTAAAAAATATCTACGAGTTTTTA-------AAAATTTATTG------TAATACCTTTTTAATAATTGTTAACGTTCGAACCAGCAAA---AATGCTTTAAAAAAAATT-ATTTTGGCGAATGACAACAGAAAATTTTGAAAAG
s caeJap4.Scaffold17084  240473 331 -   375229 tgaaggaaaaaatcgacttttggtttgaatatttttgaatttagttTACAAACAAAACTACGAAAAAGGTgcattttgtaaaaatgttttctgatttt-----taatgatttttacaagATAAATATAGAAGACCatggggagtacacgaagccgcggcaggaatttttcgttcaaaaattttcctttttgaaatggacgaAACCTACATTTCCG---CtttacctggcgcaattttgttGATTTCTAAATAacttatcaaaaa--aaaaatggt-gaaacaATAAAGtgaatagaagaaaaaaaaccgatttttgctGAAGAAAATA-ACATTTCTGAAAAG
i caeJap4.Scaffold17084 C 0 I 43
e caePb3.Scfld02_0      2548305  32 +  4147112 I
e cb4.chrX              9413169  29 + 21540570 I
e caeSp111.Scaffold629  3256385   0 - 33334924 C
e caeRem4.Crem_Contig0  1259946  38 -  4500979 I

a score=0.000000
s ce10.chrX             4300998 57 + 17718866 TCTAAAAGTTCTTGGATTGCataataatgatatttatttattttattaGTGTCACTA
e caePb3.Scfld02_0      2548305 32 +  4147112 I
e caeJap4.Scaffold17084  240804 43 -   375229 I
e cb4.chrX              9413169 29 + 21540570 I
e caeSp111.Scaffold629  3256385  0 - 33334924 C
e caeRem4.Crem_Contig0  1259946 38 -  4500979 I

a score=-1065.000000
s ce10.chrX             4301055 112 + 17718866 CCTCGTGG------AATGTT------TAAACTTTCTCAAAA--AAATTAATTTTTTTGGACATTTTGG-------------------------CAATAAAGAAGACTGAAAATTTTTCGGTTTTCTGACAAAATTCTCACCGACGATACAT
s caeJap4.Scaffold17084  240847 140 -   375229 ccccgtggtcttctattgttttgttgtaaaattagcaaaaatcagggaaatttttttgtgcgatttcgatgtgatattcgtaaattcccCACTCAATagtatattttaaaa------cagtttgccta-aaagttggcacctcc----ttt
i caeJap4.Scaffold17084 I 43 C 0
e caePb3.Scfld02_0      2548305  32 +  4147112 I
e cb4.chrX              9413169  29 + 21540570 I
e caeSp111.Scaffold629  3256385   0 - 33334924 C
e caeRem4.Crem_Contig0  1259946  38 -  4500979 I

a score=-228.000000
s ce10.chrX             4301167 8 + 17718866 AAAAATAT
s caePb3.Scfld02_0      2548337 8 +  4147112 AAGTATTT
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold17084  240987 5 -   375229 aaaaa---
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9413169 29 + 21540570 I
e caeSp111.Scaffold629  3256385 0 - 33334924 C
e caeRem4.Crem_Contig0  1259946 38 -  4500979 I

a score=-234.000000
s ce10.chrX             4301175 3 + 17718866 CCT-
s caeRem4.Crem_Contig0  1259984 2 -  4500979 -CT-
i caeRem4.Crem_Contig0  I 38 I 1
s caePb3.Scfld02_0      2548345 2 +  4147112 -CT-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  240992 3 -   375229 -CTT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9413169 29 + 21540570 I
e caeSp111.Scaffold629  3256385 0 - 33334924 C

a score=2054.000000
s ce10.chrX             4301178 3 + 17718866 ACC
s cb4.chrX              9413198 3 + 21540570 acc
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0  1259987 3 -  4500979 ACC
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2548348 3 +  4147112 ACC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  240995 3 -   375229 ACA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold629  3256385 0 - 33334924 C

a score=637067.000000
s ce10.chrX             4301181 1305 + 17718866  
s cb4.chrX              9413201 1307 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1259990 1302 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  3256385 1528 - 33334924  
i caeSp111.Scaffold629  C 0 n 0
s caePb3.Scfld02_0      2548351 1317 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  240998 1242 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=5472.000000
s ce10.chrX             4302486 179 + 17718866 TTTTCTTTAAGATACATCTCACGGTTTTTCATGTCTTGGTCGCGGCTGAAAACTTGTATAAAAATTGGAATATTGTATCAAA----------------------------AACTCACTAATGAAGAGCCTCTTTTCGAATAATATCATCGTCA----ATTTTCATG--AAGTTGGAGTCCC-ACGTATTGAGAGGATAAGCGTTCTGAAAAAAA
s cb4.chrX              9414508 125 + 21540570 TTCTTTCTCAAGTAGGCTTCACGATTCTTCATGTCTTCTTTGCGGCTGGAAA----------------AAACACAcaattaa----------------------------tattt-------------ttatttcggCAGTAGGAGATGGTTGTAAAAACTCAGCAATATATTTATAACACT--------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1261292 147 -  4500979 ATTTCCCTCAAATGAGTCTCGCGATTCTTCATATCTTGCTTGCGACTAAAAAACAGTTTCACTTTGTGAAAGGTATATTTAA----------------------------AACTTACTAAAACTCCACTTCCTTCCGTATTGTCACATCATCG----AGTGTAGCA--AACTTTACATCAC---------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    30693 167 +   386604 ACTTTTCTCAGATAAGCCTCTCGTTCTTTCATATCTTGTTCGCGactgaaaa----------------a--tacagtttttaTGCTggtccttttttcattt--------tactcACTAAAGTGCAGTTTCTTTTCGGATAGTTGTCGCATCA----ACTGGAACA--AATCTCAAATCCC-AT--------------GACGTTTCAGGATAAG
i caeSp111.Scaffold622  I 3040 C 0
s caePb3.Scfld02_0      2549669 168 +  4147112 GTCTTCCTCAAATATGCTTCTCGCACTTTCATATCTTGCTCtcgactgaaaa----------------aacaataatttgaa---------TCAATACAGTTAGGGGAGGAACTTACTAAAagactttttcctttttgataatttcttcATCA----AGTTCCGCA--AACTTCATTGGGT-AC--------------ACTTTCTCTGGATAAG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  242240 194 -   375229 ttcTCCTTGAGGTACGCCGCACGAGCTTTCATGTCTTGTTTCATGCTGAAAATAGTGAAttaatttgaataaatttaTCTAATAGTAAATTGTAATA-------------ATCTTACTAATAAGCCGCTTCCTTCCGTATAGTGTCTTCATCA----ATATTGGTA--AACTTAATGTCCC-ACTGTTTCATTGGATAGGCATTCTggagaaaa
i caeJap4.Scaffold17084 C 0 I 913

a score=-4924.000000
s ce10.chrX             4302665 53 + 17718866 TACATATTTTTTAAAGACATACAACATTGTTTTGCAGATTTCAGGGACAAGCA
s caeSp111.Scaffold622    30860 43 +   386604 cg------ttctaaaaata-attttgtgCTTTTTGAACTTGATGGAACTA---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2549837  2 +  4147112 CA---------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  242434 913 -   375229 I
e cb4.chrX              9414633  0 + 21540570 C
e caeRem4.Crem_Contig0  1261439  0 -  4500979 C

a score=-17085.000000
s ce10.chrX             4302718 131 + 17718866 AAGTTGCCGAACGTTAAACATTTTGGCATCCGGAAGTTTTTTATGTTGCCAAGAAGTAAAATCCTCGGCAATCCGCAAACAAAGCTTCGGCAACAATCCTAAAATTTTTGACAATCTGAAATTGCC-AAAGT----------------
s cb4.chrX              9414633  53 + 21540570 ---------------------------AACTAGAATTCTTTCTCCTTGTTGA----------TCAC------------------------------------------TGCCAGATCGAGTCCTTTGAAAGT----------------
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0  1261439  31 -  4500979 ----------------------------------ATTTCTTTTCTGGGTAAG----------CCTC------------------------------------------TACC---------------AACGT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    30903  97 +   386604 ----CACTTACTGTCAG----------AAACCTCATGTATTCTTCTTGATGG----------ctttcttgttcttcaaaAGA--------------------------TTCCAGATCCTCTTCCTC-CAAGTCAATCATTTCTATTGG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2549839   0 +  4147112 C
e caeJap4.Scaffold17084  242434 913 -   375229 I

a score=-1036.000000
s ce10.chrX             4302849 17 + 17718866 TGCCGAAAACTCAAACT
s cb4.chrX              9414701 13 + 21540570 CTCCGGATACGCG----
i cb4.chrX              I 15 C 0
s caeSp111.Scaffold622    31000  5 +   386604 TGCCG------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2549839  0 +  4147112 C
e caeJap4.Scaffold17084  242434 913 -   375229 I
e caeRem4.Crem_Contig0  1261470  0 -  4500979 C

a score=-4161.000000
s ce10.chrX             4302866 30 + 17718866 TTCGGCAACATATGAAAAACATGTGGGGGT----
s cb4.chrX              9414714 15 + 21540570 TTCACCAACTT-------------------CTCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    31005  8 +   386604 ---------GT-------------TGGGGT----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2549839 11 +  4147112 TCCAACAACAT-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  242434 913 -   375229 I
e caeRem4.Crem_Contig0  1261470  0 -  4500979 C

a score=-1345.000000
s ce10.chrX             4302896 56 + 17718866 TACAAAAACTACAAATATACCAGAAAACGTATAAAATCTATGTTAATTTAAAAAAA
s caePb3.Scfld02_0      2549850  6 +  4147112 ----------------------------------------TGTTAA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  242434 913 -   375229 I
e cb4.chrX              9414729  0 + 21540570 C
e caeSp111.Scaffold622    31013  0 +   386604 C
e caeRem4.Crem_Contig0  1261470  0 -  4500979 C

a score=205.000000
s ce10.chrX             4302952 16 + 17718866 AACTTACAGCAAGCAC
s caeJap4.Scaffold17084  243347 16 -   375229 AACGTACTTTCAGAAT
i caeJap4.Scaffold17084 I 913 C 0
e caePb3.Scfld02_0      2549856  0 +  4147112 C
e cb4.chrX              9414729  0 + 21540570 C
e caeSp111.Scaffold622    31013  0 +   386604 C
e caeRem4.Crem_Contig0  1261470  0 -  4500979 C

a score=8086.000000
s ce10.chrX             4302968 29 + 17718866 TTGCATGTAATCATCATATCGTGCAGCTC
s cb4.chrX              9414729 25 + 21540570 ----ATGTTTTCACTGTgtcgtttctctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1261470 29 -  4500979 TTTCATGTAACCATCATAACGTTTTTCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2549856 23 +  4147112 ------ATAACCATCACAGCGTTTTTTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  243363 29 -   375229 GTTCATATAGCCATCATAGCGTTTCTTAC
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    31013  0 +   386604 C

a score=-38373.000000
s ce10.chrX             4302997 622 + 17718866  
s cb4.chrX              9414754 648 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1261499 643 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold622    31013 578 +   386604  
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2549879 647 +  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17084  243392 639 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-11652.000000
s ce10.chrX             4303619 31 + 17718866 TTCGCT-----------CCCATTGGTAAGCCCGACATGGAAT------------
s cb4.chrX              9415409 14 + 21540570 ATCATC-----------TCACTT-----------------GG------------
i cb4.chrX              I 7 I 5
s caeSp111.Scaffold622    31599 42 +   386604 GCCACTAGTAGACGGGATTGATTGAGAATTGCTGCTGGGAGG------------
i caeSp111.Scaffold622  I 8 I 8
s caePb3.Scfld02_0      2550534 42 +  4147112 ACCACTTGTAGACGGTGCCATTTGCATGGATGTGCTAGGAGT------------
i caePb3.Scfld02_0      I 8 I 24
s caeJap4.Scaffold17084  244031 30 -   375229 ------------------------GGAGTTCCGACGGGGCTTTCCGTATTCGGT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1262142 61 -  4500979 I

a score=-54704.000000
s ce10.chrX             4303650 313 + 17718866 --------TGTTCAAATCTTCAG---CATTGGTTTGTTGGATTGGAGGAGGTGG----TTCCTGCGCAGG--------------------------------ATTCTTCTTTCCTCTATACCGTGGCTTTGGTGCAACTTTAG---------------------------------CTGGAGGTATTTGTTGCTGCTGCTGTTGTTGGATAATTGGAGGATTTTGCAGATTCTGCTGATTTTGAATGTTGGCCATATTTTGATTGTTG---------------TTCGATT---------------GCATTGGTTG-----------ATTCATCATATT------TT------------GCTGCTGCTGCTGATGTTGGATCGGAATGTTTTGCTGATTTTGCATTGGTGGCTGCTGA----------TTTTGCCCCTGGTTGTTCGGTGGTCCA------TGCTGTTG---
s cb4.chrX              9415428 328 + 21540570 --------ATTTCAAAGCTTCAGAGACAGGGGTGTCAGCCTGCAGCACAGTCGG----TT------CCGTATTTGCGTT-----------------------GTTCTTCTTAGCTCGGTTTCTTTTCCTA---GGAGCCGGAG---------------------------------CTGGAGGAGGTGGTTGCTGTTGT---TGGAGGACAGGTGGAGCCTGTTGCTGATTCTGCATATTC---ATATTATGCATATTTTGTTGCATCGGC--ATTTGATGGTTTTGGCC---------------TCCCTGTTGGTTCGTATTGATGTTCTGGCTCTG------TT------------GGTATTGCTGGCTCTGTTG---------GTGTTGCTGGTTCTGC----TGGTTTTGCTGGCCTTGCTGACTATATTGTTGG---------GGTCCATTTCGCTGCTGTTG---
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1262203 262 -  4500979 --------TTCTCAACGCTTCAGAAACGGGAGTATCTTCTTTGATAACTTTTGA----TTCAAGAGCAGCAGCAGTAGC-----------------------AGTCTTTTTATACCGGTTTCGTTGCCTG---GCAGCTTTGG---------------------------------CTGGGATTGGTTGTTGCTGTTGC---------AAAACTGGAGGATGCTGGGGGCTGTTCATATTTGAGGAATTCTGCATACTTTGCTG--------------------------------------------------------------ATTCTGCATCTG------TT------------GTGAT------------------------CCTTGTTGATTCTGCATCGGGGTGTTGCTT----------CTCCGCTGTT------------GCACATTGCGATTCTGTTG---
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold622    31649 304 +   386604 --------GATTTGAT------------GAGGTT------TCGGGAGGAGTAAAATTTTGCATTGGTTGAACTGGCATTGGGTCAGA---------AACAGGAGGCTTTCTCGAACGAGATCGCGGCTTC---GTGGTTTTAC---------------------------------CTGGCGTGatctgttgttgttga---------a---ctGGAGGTATTGGCTGATTTCTCATATTGGATTGTATCTGCTGATTCTGTTGGTTCATTCGATTTTGTTGATTTGGCG---------------TGAGTTGTGG-----------GTTCTGCAAATtctgctgct------------gctgctgctgcacaggttg---------ttgttgtggttgTTGATTCGGAACCTGGCTG----------CTCT------------------GTCCA------CGCTGTTG---
i caeSp111.Scaffold622  I 8 I 19
s caePb3.Scfld02_0      2550600 270 +  4147112 --------GTTTTGCTGC----GAGACAGGGATT---AGCTCAGGAGCAGCAGA----TGCGGCAGCGGAAGCAGCATT-----------------------ATTCTTCTTCGCCCGTGACCTTGGCTTT------GCTTTGG---------------------------------AAGGAGCTGGTTGTTGTGGTTGA---------ATTGCCGGCGGAGTTTGCTGGTGTTGCATGTTTCCTTGGTTCTGCCGAGTCGGTTGG------------------TTTGGCG---------------TCAAAGGTCT-----------ATTCTGCATATT------AT------------GCTGTTGCTGCACGGACTG---------ATGTT---GTTGCTGCATTGGCATTTGGTTA----------TTCT------------------GCCCA------TGTTGCTG---
i caePb3.Scfld02_0      I 24 I 15
s caeJap4.Scaffold17084  244061 377 -   375229 TGTATCATGTGTTGACCATTTTGTCTTATTGGCG---TGTTTTGTTGGGATTGG----TTTTGCTGTTGGAATGGTTGCTGTTGATGTTGCTGCTCAGGAAAACTTTTCTTTGCTCGACTTCTTGGCTTG---GGAGTTTGAGTTTTTACAGGCGTAGGGGGATTATTTGGAACCATTGgaatttgttgttgttgttgt------------------tgttgctgctgatgctgctgctgttgAACCATTTGCCGATTTTGATTATGATTCTGATTTTGCCCCACTGGCTGAGACTGTTGCATGATAATTGGCGA-----------GTTCTGGACTTG------ATTAATCGTAATCAACTGATGTGGAGCATTCcg---------ttgctgctgctgctgc----------tgctg----------cccTCCCGAT------------GTC--------GTCTGATGCAG
i caeJap4.Scaffold17084 C 0 C 0

a score=-1889.000000
s ce10.chrX             4303963 19 + 17718866 TTGAAAACC------TTCCTCTTGA
s cb4.chrX              9415756 10 + 21540570 ---------------GTTCTGTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1262465  4 -  4500979 ---------------GTGC------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2550885 25 +  4147112 TTGCTGACCTTGGTGGTGCTGTTGA
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17084  244438 19 -   375229 CTGAACACG------CTGCTGTGGA
i caeJap4.Scaffold17084 C 0 I 66
e caeSp111.Scaffold622    31953 19 +   386604 I

a score=-4619.000000
s ce10.chrX             4303982  9 + 17718866 T-----GACCTCCC----------------
s cb4.chrX              9415766 30 + 21540570 CTACCAGAACTCCGTTGCTGTTGATTCGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1262469 21 -  4500979 ------GGAGTTTGTTGCTGTTGAT---GC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2550910 15 +  4147112 ACG---GAAGTACCTTGC------------
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17084  244457 66 -   375229 I
e caeSp111.Scaffold622    31953 19 +   386604 I

a score=-1667.000000
s ce10.chrX             4303991 32 + 17718866 TGATGAACTTGTTGCATTGGTTG------CCCTTGTTG
s cb4.chrX              9415796 20 + 21540570 ---TGGTCCGGTTGACTCGACTG---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1262490 20 -  4500979 ---TGATTAGATTGTCCGTGTTG---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    31972 23 +   386604 TGAGGAACTTGCTGCATATGTTG---------------
i caeSp111.Scaffold622  I 19 C 0
s caePb3.Scfld02_0      2550931 29 +  4147112 TGATGACCTGGTGGCATTTGTCCTTGTTG---------
i caePb3.Scfld02_0      I 6 I 26
e caeJap4.Scaffold17084  244457 66 -   375229 I

a score=43.000000
s ce10.chrX             4304023 11 + 17718866 GTTTGGCATTT
s cb4.chrX              9415816 11 + 21540570 ACTCGAAACGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1262510 11 -  4500979 ATTAGATTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    31995 11 +   386604 AATTGGAATAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2550960 26 +  4147112 I
e caeJap4.Scaffold17084  244457 66 -   375229 I

a score=-6250.000000
s ce10.chrX             4304034 27 + 17718866 TTTGCTGG-------TT----------------TTGTTGTCTCTGCTGAG
s cb4.chrX              9415827 42 + 21540570 TTGGCGGA-------TTAGAGACTAATGCGA-CGAGCTTAGTTTCTCCGT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1262521 42 -  4500979 GCTGCTGG-------TT-GAGAAGAGTGTGAGCTTGTTGTGTTTCTCCAT
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622    32006 42 +   386604 TCTGCTGA-------TT-CTGATGACTAGGTCCTGGTTGCATGTCTTGAG
i caeSp111.Scaffold622  C 0 I 12
s caeJap4.Scaffold17084  244523 30 -   375229 TTTGCCGGAGTCGCATT----------------CGGGTCCATTTGC----
i caeJap4.Scaffold17084 I 66 C 0
e caePb3.Scfld02_0      2550960 26 +  4147112 I

a score=20572.000000
s ce10.chrX             4304061  79 + 17718866 GAACAAGTTTGTACTGCATTCCATTAATAATCGCG------------------------TGCTCTCCATTGATTCTAATGGTTTGATCAT------------TGTCCGGCTCAAA
s cb4.chrX              9415875 112 + 21540570 GAACCAATTTATACCGAACACCGTTGATCACAGCAGTCTCTCCTTGGATATGAATCTCTTGTTCGGTGTCAACTTTGACCAT---CTCGTCGACTCTCGGCATTTCTTGATTCGG
i cb4.chrX              I 6 I 6
s caeRem4.Crem_Contig0  1262572  63 -  4500979 GAACAAGTTTATACTGTTGTCCGTTAATGATTGCA------------------------TGTTCACCATTAATATGGATCAT---CTTGT-------------------------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622    32060  79 +   386604 GAACCAGCTTGTATTGCAGTCCATTTATAATGGCA------------------------TGCTCTCCATTGATTCGAATGGTTTGACCGT------------TATCTGGCTCAAA
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0      2550986  76 +  4147112 GAACAAGCTTGTATTGCATCCCGTTGATAATAGCA------------------------TGTTCTCCATTGATTCGAATTGT---ACTGC------------TGTCTTGTTTGAA
i caePb3.Scfld02_0      I 26 I 31
s caeJap4.Scaffold17084  244553  76 -   375229 --ATTATTCGATATTGCATGCCATTGATGATCGCC------------------------TGGTCGCCATTGATGCGAACTGT----TCGC--------GACGAATCTGGCTCCA-
i caeJap4.Scaffold17084 C 0 C 0

a score=-1343.000000
s ce10.chrX             4304140 31 + 17718866 ATTATCTGTAACCACCGGCTGCATCATCTGG
s cb4.chrX              9415993 31 + 21540570 TTGTGCAATCACCTGTGGCTGCATcggttgt
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1262635 13 -  4500979 ------------------CTGCGTCAAATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32139 16 +   386604 ---------------GGCTTGCACATTCTGT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  244629 23 -   375229 --------CGACTATTTGCTGCggctgttgt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2551062 31 +  4147112 I

a score=-98456.000000
s ce10.chrX             4304171 568 + 17718866  
s cb4.chrX              9416024 779 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1262648 428 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32155 475 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2551093 480 +  4147112  
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17084  244652 482 -   375229  
i caeJap4.Scaffold17084 C 0 I 1177

a score=24250.000000
s ce10.chrX             4304739 131 + 17718866 GT--ATGTCATGGTCATGCGTAAA-ATAGCGTTTTATGAAGAA--GAGAATTTCCGCGAGAGTGGCAGGAAAT---AGTGTG-------CATATAACTATGGTGA-GCTCATAAATATTCAGTTT----TTCTGGTCTCCCAGTTTATTTT
s cb4.chrX              9416803 136 + 21540570 GCATTTTAGTTAGTCATGCGT--ATGGCCAGAAAAACGGAGGGTCGagaaa------gaaaa-gggaaaaa-----ttttAGTGCCCGCCCGGAATCTATGCTAG-GCTCATAAATATTTACTTTTGCTTCTTGGTTCCTCATCTCAtgtt
i cb4.chrX              C 0 I 2558
s caeRem4.Crem_Contig0  1263076 121 -  4500979 GC-------TTAGTCATGCGCAAAcggagaggaaaaagaaaaacggagaga------ggAAGCGAGAGAAA-----TTTGCG-------CCGGAAACTATGCTCT-CCTCATAAATATTTACTTTCTCTGC----TTCCTCAGTTTTTGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32630 131 +   386604 GT--CCTCGTTAGTCATGCGTAAACGCAGAGCAATAAGAAATATGGAAAGATT----GCGAGCGAGAGAAACG---TGTGCGT------CCGGAAACTATGCTTT-CCTCATAAATATTTACTTTCTCCTCCTAGTTTCTCAGTT----CT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2551573 135 +  4147112 GG--TTTCGTTAGTCATGCGTAAACGCAAagcaataagaaaaatgaagggatC---AGggagtgagagaaaaaaattgtgcg-------cCGGAAACTATGCTTCGCCTCATAaatatttacttt----ttctgGTTGCCCAGTTTTTGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  245134 1177 -   375229 I

a score=-2815.000000
s ce10.chrX             4304870 16 + 17718866 -----CTGGACTTGGTGATGA
s caeRem4.Crem_Contig0  1263197  6 -  4500979 GTGGAC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32761  2 +   386604 -----CC--------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2551708 16 +  4147112 -----CCGGACTACATGATGA
i caePb3.Scfld02_0      C 0 I 210
e caeJap4.Scaffold17084  245134 1177 -   375229 I
e cb4.chrX              9416939 2558 + 21540570 I

a score=-14116.000000
s ce10.chrX             4304886 306 + 17718866 TATGGAGAAAAATATCTTGAGTTTCTACTTCTTCAACAACTTTCGTTTTACTTGAACTTTTGGAAAAAAACATTTATAGTAACAATTCGAAACTATTTTGAAAGGTGAGCAAAAGGGGTTGTCAATTCATATGTACGACTTCCCTTTTGCGTTTTTTGTTGTGTGTTTTTTGAAGGGCTACGTTTTTTTTTTCAAAAATCGCTAATTACAACATACTGTATGTTTATTGCTATTATAATTGTAT----------------TTTTCAATCAATTTCTATGTATTTGTGACAAAATTGCCGTCTCCAATAGTTTTTTTTTTCAA
s caeRem4.Crem_Contig0  1263203 102 -  4500979 -------------------------TACTACATCATAAGCCAT-GTGTGACATT-----TAAGAAGAG-----------------------------------------------AGAGTCCACACTCA----------------------------------------------------------------------------------CAAATCTCGTGTTTCTCGAAAGTATAAT---------------------TTTCCTATGCATTTCGTTAATTC---------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32763 211 +   386604 TATG---------------------GACTACACGACAAATCTTCGTGTGACACTAA---TAGGAAGAGGA---TTAAGCCAAGCACGGAAATCCTCTTTTTAA------------AGCTTCCGTTTTCACATGAACA-------------------------------------------------CTTTATCAAAA------------AGCAAGTTGCGTCTTATCTCGGATTATAATAATGTCTGATGCTTCTGACGgtttctgattcattttcctatttctg--------TTGTATTACCTGATGATCTTGTGGTT---
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2551724 210 +  4147112 I
e caeJap4.Scaffold17084  245134 1177 -   375229 I
e cb4.chrX              9416939 2558 + 21540570 I

a score=12744.000000
s ce10.chrX             4305192 146 + 17718866 TTACCTGTG---------GTTCTTGCTGTTGAATCCGAATTTGCTGTTGTGGTGG---CATGTTCATGTTCGGAGCATTTTGCTGCATTTGCTGATGCTGAAGAGGCTGCTGCTGATGAGGTGATCCGTTGTTCATATTTTGATTGT---TTTGTTGAATT
s caeRem4.Crem_Contig0  1263305 137 -  4500979 CTACCTGCG---------AGTCTTGTTGTTGCATTCGCATCTGCTGTTGTTGTGGGGCACCATTCATATTC---------TGCTGCACCTGCTGCATCT------GCGGATGTTGCTGTGGAGACCCGTTAGTCAAGTTGGGCTGATTTATCGGTTGGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    32974 116 +   386604 ------------------GCTGTGGTTGCTGAATTCTCATTTGT---TGTGGTGG---AGTGTTCATATTC---------TGTTGCCCTTGGTGCATTT---------GATGTTGCTGAGGTGATGCGCTTCTCATATTCTGCTGGT---TTTGCTGCATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2551934 128 +  4147112 TCACCTGTGGGTCgtgctgctgttgttgctgcaTTCTCATTTGTTGGTGTTGTTG---TCCACCCATATC------------TTGCCTTTGATG---TT---------CATGTGGAGGAGTTGAAATGTTT---ACATTTTGATGAG---TCCGTTGAACT
i caePb3.Scfld02_0      I 210 C 0
e caeJap4.Scaffold17084  245134 1177 -   375229 I
e cb4.chrX              9416939 2558 + 21540570 I

a score=3180.000000
s ce10.chrX             4305338 8 + 17718866 TGTTGCAT
s caeRem4.Crem_Contig0  1263442 8 -  4500979 GGAAGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    33090 8 +   386604 TGTTGGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2552062 8 +  4147112 TGTTGCAT
i caePb3.Scfld02_0      C 0 I 492
s caeJap4.Scaffold17084  246311 8 -   375229 TGTTGCAT
i caeJap4.Scaffold17084 I 1177 C 0
e cb4.chrX              9416939 2558 + 21540570 I

a score=-7224.000000
s ce10.chrX             4305346 73 + 17718866 TCTCATTTGCTGCTGCGGCGGCGTGTTCATACTC------------GATGGGCCTTGTTGTATC---TGCAAAATGGGTTAAAGTTAG
s caeRem4.Crem_Contig0  1263450 72 -  4500979 --TCGAAT----CTGTGGCTGTGCATTGGGATTC----------AAGTTGATTGTTATGGGTCCTTGTGGCAACTGAAataaagtaag
i caeRem4.Crem_Contig0  C 0 I 94
s caeSp111.Scaffold622    33098 80 +   386604 TCTCGACT---GCGATGGAAAAGCAGTAGACGGCGGCAActggaaaagtgagttttgtaatttc-----aaaaacggaTTATGATGAG
i caeSp111.Scaffold622  C 0 I 199
s caeJap4.Scaffold17084  246319 54 -   375229 TCTCATCGGTTGCTGTGGGGAATTGCTGATAGCC-----------------TGCTGGTTATTCT-----GCATCTG------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2552070 492 +  4147112 I
e cb4.chrX              9416939 2558 + 21540570 I

a score=0.000000
s ce10.chrX             4305419 3 + 17718866 TTT
e caePb3.Scfld02_0      2552070 492 +  4147112 I
e caeJap4.Scaffold17084  246373 0 -   375229 C
e cb4.chrX              9416939 2558 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I
e caeRem4.Crem_Contig0  1263522 94 -  4500979 I

a score=488.000000
s ce10.chrX             4305422 68 + 17718866 TGAAGATCCATTTAAAGAGTATTACATAATGAGGCTGTGATGGAGGTCGGCTCATCAT---CCCGCCCTGC
s caeJap4.Scaffold17084  246373 55 -   375229 ---------------AAACTGTTGC-TGGTGCCCTTGAGATTGAGGTCCGTTCATGATTTGCTGGCCTTGC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2552070 492 +  4147112 I
e cb4.chrX              9416939 2558 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I
e caeRem4.Crem_Contig0  1263522 94 -  4500979 I

a score=-2113.000000
s ce10.chrX             4305490 79 + 17718866 GGCTGCACCTGAAATTTTTTGCACTTAAATTTTTGAATGCGAAA------------TTAGATTTAATTTGAAGAAAACAAAA-TAACATACG
s caeRem4.Crem_Contig0  1263616 90 -  4500979 GGGTGGTCTGGACATTATTTG--ATGCAAGTTTGGCATCTGAAACTCGTGAACTATTTCGATCTATTCTGGGAAAACCAGAATTAACTTAGG
i caeRem4.Crem_Contig0  I 94 I 31
s caeJap4.Scaffold17084  246428 51 -   375229 ---------------------------------TGCATCTGAAG-CtgtgaataaaataaaaatatcttCTAGAAAGTGAAA-TAA------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2552070 492 +  4147112 I
e cb4.chrX              9416939 2558 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I

a score=788.000000
s ce10.chrX             4305569 5 + 17718866 CCCAT
s caeRem4.Crem_Contig0  1263737 5 -  4500979 CACAT
i caeRem4.Crem_Contig0  I 31 I 20
s caePb3.Scfld02_0      2552562 5 +  4147112 CTCAT
i caePb3.Scfld02_0      I 492 C 0
s caeJap4.Scaffold17084  246479 2 -   375229 ---AC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9416939 2558 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I

a score=-1953.000000
s ce10.chrX             4305574 67 + 17718866 TTGTGA----------AGAAGGCCTA------------TTC------ATCAGCTGAGGTCCGCC---TTGTTGGTG------CATCTAAAATTTATGAATTTAG
s cb4.chrX              9419497 62 + 21540570 TTGTGG----------AGACAGTCGG------------TTC------ATCTGTTGAGGTCCACC---TTGCATCTG-----------AAAACTTGTTCATTGAG
i cb4.chrX              I 2558 I 219
s caeRem4.Crem_Contig0  1263762 95 -  4500979 TTATGGGACTCACCGAAGACTGCTGGGATGTTAGTGTATTC------ATGTTCTGGGATCCACC---TTGTTGCTGTTGATGTCCCTGAAATTTCTCTAGTGAA
i caeRem4.Crem_Contig0  I 20 C 0
s caePb3.Scfld02_0      2552567 65 +  4147112 TTGTGG----------CGAAGGTCTG------------TTC------ATTCCTTGAGGCCCTCCATGctgcatctg-----------aaaatttgcaataTGAA
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17084  246481 51 -   375229 CTGTGG----------CTGAGGAGAA------------TTCTGTGGAATGAGCTG------------CTGCTGCTG-----------TGATTGTGG--------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    33178 199 +   386604 I

a score=-2787.000000
s ce10.chrX             4305641 35 + 17718866 GGCACATAATTAATTAAAAGCTCA------CCTGTTGCGAA
s caeRem4.Crem_Contig0  1263857 33 -  4500979 ------GAAT--GTTCACATTTTGTGTCCCACTGTTATTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2552655 35 +  4147112 GACACACAAT--ATTAAAAGTTCAAG----ACTGTGACGAA
i caePb3.Scfld02_0      I 23 I 67
s caeJap4.Scaffold17084  246532 22 -   375229 -------------CTGCATGCGCA------TCGGTTGTGGA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9419559 219 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I

a score=349.000000
s ce10.chrX             4305676 3 + 17718866 GGT
s caeRem4.Crem_Contig0  1263890 3 -  4500979 AGT
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold17084  246554 3 -   375229 GAT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e cb4.chrX              9419559 219 + 21540570 I
e caeSp111.Scaffold622    33178 199 +   386604 I

a score=-2831.000000
s ce10.chrX             4305679 48 + 17718866 GGTCGGTTCATG--CTCATCGG--TCCACCACCTTGTTGCATCTGA-----------AAAAAA
s caeRem4.Crem_Contig0  1263900 49 -  4500979 atttcatttattagttt-tcagttttacttACACT----CATCTGG---------GGAAAAGG
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    33377 61 +   386604 GTTCCATTTATGACTTTCTCAA--TTATTCACATTGTCACATTTGAACTGCTTATAAAAATAG
i caeSp111.Scaffold622  I 199 C 0
s caeJap4.Scaffold17084  246557 42 -   375229 GCTCCATTCATA--TTGATGGG--T------CCCTGCTGCATCTGG---------ATTAAA--
i caeJap4.Scaffold17084 C 0 T 237
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e cb4.chrX              9419559 219 + 21540570 I

a score=-2392.000000
s ce10.chrX             4305727 31 + 17718866 TTAAGTTGGCTTATGG-------TATATTATAACTCTC
s caeRem4.Crem_Contig0  1263949 36 -  4500979 TCTGTTCATTCCTTGAGGTGTGGCATGCTGT-AGTGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    33438 27 +   386604 TGAACTTAGCCCATAA-----------CTATAAACGTC
i caeSp111.Scaffold622  C 0 I 61
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I

a score=106.000000
s ce10.chrX             4305758 71 + 17718866 CATTGAGAACAATTTTTTTCAATAATGGTGTCTTAAAGCACACGTAC----CAATCCGGGAATTGACCGCAAATT
s caeRem4.Crem_Contig0  1263985 64 -  4500979 --CTGAGAACAACAAATACAAATA---------CAGTGAACACGTATATTACAATTAGGGAGGTTTTTAGATGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I
e caeSp111.Scaffold622    33465 61 +   386604 I

a score=886.000000
s ce10.chrX             4305829 5 + 17718866 TTTGA
s caeRem4.Crem_Contig0  1264049 5 -  4500979 TTCGA
i caeRem4.Crem_Contig0  C 0 I 87
s caeSp111.Scaffold622    33526 5 +   386604 Tttaa
i caeSp111.Scaffold622  I 61 C 0
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I

a score=-601.000000
s ce10.chrX             4305834 75 + 17718866 AA--AAAATAGGAACTTCATAACTAA------GTTAAGAAATTTTTGAACAAACTTTTGCGTA-TCGTAACTTTCAT---------GTAACTG
s caeSp111.Scaffold622    33531 90 +   386604 aagcaaaaaaagaaaaccacacataattttttgttcacaGTTATC---ACAAACATTGGTATACTCACATTACTCATTTGCGGAGAGGGTCTG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I
e caeRem4.Crem_Contig0  1264054 87 -  4500979 I

a score=-2121.000000
s ce10.chrX             4305909 78 + 17718866 ---------------GTTGttttttaatttattttatgttacatttattaaatacaatttatCTCAAGTCTCATTTGTTTTTT------GACAATTTTC------
s caeRem4.Crem_Contig0  1264141 65 -  4500979 ---------------GTTGtttttt-------------tGACACTTCAC-----GAAACTAATTCAagtttctctcctttttt-------gcaatttaTGGTGCC
i caeRem4.Crem_Contig0  I 87 C 0
s caeSp111.Scaffold622    33621 70 +   386604 CTCATAGGTTGAGATGTTGTTTGTT-----------------------------GCATCTGAAACAATATTGTTTCGGTTTATTGACGAAACAATTTTA------
i caeSp111.Scaffold622  C 0 I 6
e caePb3.Scfld02_0      2552690 67 +  4147112 I
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I

a score=5819.000000
s ce10.chrX             4305987 52 + 17718866 ----ACTGACCTGATGAGGTTGAGACGGCGGTCTGTTGATACTCTGTGGTCCAC---CT
s caeRem4.Crem_Contig0  1264206 49 -  4500979 ACTAGCTAAACT------ATTAAAACAA----TTGTTGTTTCTTTTAGGGCCACTAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    33697 46 +   386604 ----AAATACCT------GTTGAGACGGCGGCCTATTAATGTTTTGTTGCCCTC---CT
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2552757 46 +  4147112 ----ACTGACCT------GCTGAGACGGCGGCCTATTGATGTTCTGTGGTACTC---CT
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold17084  246599 237 -   375229 T
e cb4.chrX              9419559 219 + 21540570 I

a score=8973.000000
s ce10.chrX             4306039 14 + 17718866 TGTTGCATCTGAAA
s caeRem4.Crem_Contig0  1264255 14 -  4500979 TGCTACatctaaat
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold622    33743 14 +   386604 TGTTGCATCTTAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2552803 14 +  4147112 TGTTGCATCTGAAA
i caePb3.Scfld02_0      C 0 I 787
s caeJap4.Scaffold17084  246362 14 -   375229 TTCTGCATCTGAAA
i caeJap4.Scaffold17084 T 237 C 0
e cb4.chrX              9419559 219 + 21540570 I

a score=-17883.000000
s ce10.chrX             4306053 116 + 17718866 CTGTTCAAGCATTGTAAGCTTTTAAT-------------------------------TGAAAGTTTCGCAAAC-----CTGATGAGGATGAGATG-----------------GTGGTCCGTTCATGTTTTGTTGCTGT---TGCATCTAAAAATTAA--------------------------------G---AAAATAAATGTTTC
s caeRem4.Crem_Contig0  1264292 170 -  4500979 -----CGAG---TCTCACATTTAAATGTG----------------AAACCTGAAACGCGAAAGTCTCTGAAGCC-ACGCTAATTAGTTTCAAATGTCAACGCCAAGCTTGGAATTTTCCGTTAATGCTTTTTTGGCG-------ATCAAAGTTTTCG-----CTCGTCTACAAATTCCCAAATTCACCTGTTCAAACTAAATCCTCT
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold622    33757 160 +   386604 -Gtttcaaa---tacaaaattttAGTGTGAATGTAATCTaagccaaaaaatgaaatgtgaGA----TAGGAGCT-TTGCTAATTAGATTGAAATG------------------------GGTGCTGCcttctttctg-------atttgaaACTCCAACAACATCTTTTTCATGGCCTCAGA-------GAACAAAGTGATACTTTT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  246376  85 -   375229 ------------------------------------------------------------------------CTGTTGCTGGTGCCCTTGAGATT-----------------GAGGTCCGTTCATGATTTGCTGGCCTTGCTGCATCTGAAGCtgt---------------------------------gaataaaataaaaatatc
i caeJap4.Scaffold17084 C 0 I 207
e caePb3.Scfld02_0      2552817 787 +  4147112 I
e cb4.chrX              9419559 219 + 21540570 I

a score=-4707.000000
s ce10.chrX             4306169 64 + 17718866 GA-ATCAATTTCTCATTAATTTC-------------------------ATTTTGACTCTGATCTACAAGCGTA---------CATGC------CATTTTTCTCGT-
s caeRem4.Crem_Contig0  1264462 89 -  4500979 TA-TACGTTTACTCGTTATTTCTGAGACGGCTTCCACCAATCTCCCTTATTTTCATTATCGTTCCCATAAATA---------AATGT------AATCTATTTACT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    33917 89 +   386604 CATTATTACTActcaatactttt-------ttttcgaaaataaa----atttttatgat------cAAAAATACTGGTTAACAACGTGTtgggaaaatttttattt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2552817 787 +  4147112 I
e caeJap4.Scaffold17084  246461 207 -   375229 I
e cb4.chrX              9419559 219 + 21540570 I

a score=-20713.000000
s ce10.chrX             4306233 162 + 17718866 -------------ACTTTCAAGCTGAAAGTTTGGTA------------------------ATTTTTTT--TTTAAGCGTCCTATAAATTTTTAT----------ATTTTTGTG----CTAA-----TTTGTGACTCTGTATA--ATAG-AGTATAATTTTTTC--AGACTGTTT-------TTTTT---------AAAACAAA------TACTGACCTGCATTTGCTGTGGAGACACCTGCGGTATT
s caeRem4.Crem_Contig0  1264551 184 -  4500979 CACCTGATGCGGCGGCTGTGGAG--AAGGTCGATTC------------------------ATGTTCTGAGGTCCACCTTG-T-TGCTGTTGCTG----------CATCTGAAATAttataa-----ttcatttttgtatgaGTTGCCA-GATAGAATTCTTTCCATCATTTATT-------ACTAT---------AAAATCGTTTTGAATTCTTACCGTCATTGTTTGATGGGGAGGCTGCATC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34006 225 +   386604 -------------gttttcaagc--aatatttcatttgttattttacgcatttgttcaaaattttatag-aTTGAACGTACT-TGAATCGACTGCGGAGATGGCCTTCCCATGCTTTGTGAACCACTTTGCTGTTGCAACTGCTGTAAAGACAAGAtgagttt--ttatttaatGAGTCAGATTGTTCTGATACGAAAATCAATTTAATTAATTACCTGATGCTGCTGAGGTGGAGGTTGCATC---
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0      2553604 172 +  4147112 -------------agtttcaagC--AAAATCTAATC--ctagtttct-------------attttttagcGTCGAAAGTA---TGAATATCTTA----------CTTGCCATG----ATGA-----TTCGTATTTCAAACTA--GTCATTATATAATCTCCAC--TAACCTACTGAATCGAgtc-----------aaaataaaatgtatc--TTACCTGA---TGTTGGGGAGGAGGTTGCATC---
i caePb3.Scfld02_0      I 787 I 6
e caeJap4.Scaffold17084  246461 207 -   375229 I
e cb4.chrX              9419559 219 + 21540570 I

a score=-20147.000000
s ce10.chrX             4306395 284 + 17718866  
s cb4.chrX              9419778 347 + 21540570  
i cb4.chrX              I 219 C 0
s caeRem4.Crem_Contig0  1264735 269 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34237 242 +   386604  
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2553782 341 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17084  246668 356 -   375229  
i caeJap4.Scaffold17084 I 207 I 28

a score=-2892.000000
s ce10.chrX             4306679  7 + 17718866 GGGAG---------CT
s cb4.chrX              9420125 16 + 21540570 AGGTTGGGGTTGTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265004 13 -  4500979 AGGTT---GCTGCTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34479 10 +   386604 TGGTT------GCTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2554123 10 +  4147112 ttgtt------gtggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  247024 28 -   375229 I

a score=28118.000000
s ce10.chrX             4306686 240 + 17718866 TGATTTTGTGGAGGACGCATTTGCTGGCCCATGTTCATCATAAGATTCTG----------------------TGCAGG-----------TTGCTG---TTGCATTTG--------TTGA------------------------------------GG----------GCCT--------------------------------------------------------TGTTGTCCCTGCATGTTCACCATTTGTGA------------------------------------TTGTCCTTGTGGAATTTTATTTTGTT---GCATGGGTGGTCCA------------CCTTG------------CTGTATGACCCGATGTGGACC---AGGCGGCTGAATTTGGTGTGGTCGCTGCACATTGAGTAATTGTGGA------GCAGCTTGATTGTGCTGC
s cb4.chrX              9420141 414 + 21540570 TGGCCTTGCTGGGGACGCATTTGCTGTCCCATGTTCATTATATGCCCCTGGGATTGGCTACTCTGTTGGACATGTTGGGAAGATGGGCCTGGCTGATTTTGCATATG--------TTGTGGAGATGGTCCCGGCTGATTTAAGTTCTGACCACTTGGTACTCGCATTTGCTGGGGAGACGGTCCAGGTTGTGGATGGTGAAGGTGTTGTGGTGATGGTCCCGGCTGCCGTTGTCCCTGCATATTGGATATTGGTGGTTGGCCCATATTA---------CCATGTTGCATATGTTGGCCTTGTTGAATTTGGTTCTGTTGGGGCATCTGATTTTGT------------CCCTG------------TGGCACCATCCTATGTTGGCCCGTAGGCGGCTGAATCTGTTGCGGTCGTTGGACATTTAACAGTTGTTGTGGT---GGACCTTGGTTGTGTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265017 300 -  4500979 TGATTTTGTTGAGGACGGATTTGTTGTCCCATGTTCATCATATGGCCTTG---------------------------------------TGGCTG---CTGCATTTG--------CTGGGATGATGGTCCAGGTTGAC-----------CAACTTGG----------------------------------------------------------------------CGTTGCCCTTGCATATTAGCCATTTGTGATTGACCCATATTAATCTGCTGTCCTTGTTGCAT---CTGATTCTGCTGCATCTGATTCTGTT---GCATCTGATTTTGTTGCATGTTCTGCCCTTG------------GGGAGGACCCCGGTGTGGGCC---GGGTGGCTGTATTTGATGAGGTCTCTGTACATTTAGTAGTTGTTGTCCC------CCTTGATTGTGCTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34489 279 +   386604 TGATTCATTTGTGGCCGATTCTGTTGCCCCATATTCATCATTTGTCCCTG---------------------------------------CTGTGG---TTGCATTTG--------TTGA------------------------------------GA----------GTTTGATGGCCCTG-----GCTGTTGA---------------------ATCACTGGACGCTGTTGTTGCTGCTGCTGGGGCAT---CGGTTGTCCCATATTT---------ACATG---------TTGACCTTGTTGCATTTGATTTTGTT---GCTGCATGCCCTGC------------CCTTG------------TGGAGCAATCCGGTGTGGCCC---GGGTGGCTGAATTTGATGAGGTCTCTGCACATTTAGTAATTGTTGA------GCACCTTGATTGTGCTGT
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2554133 297 +  4147112 tggtTTTGCTGATTACGCATTTGTTGCCC------CATCATTTGTCCTTG---------------------------------------TTGAGA---TTGCATTTGATGTTGATTTGAGGAG-----CCTGGCTGCT-----GAATCACAGTTCGA----------TGCTGAGGAGGCTGTTGATGTTGTTGA---------------------------------TGGTGCTGCTGCATCTGGGGC---------TGTCCCATATTC------------TG---------CTGCCCTTGTTGCATCTGAGTTTGTT---GAATAACTTGCTGG------------TTTTG------------TGGGGGTATCCGGTGAGCCCC---CGGTGGTTGAATCTGATGTGGTCGGTGTACATTTAACAGTTGTTGAGGTTGTGCGTTTGGATTGTGTTGC
i caePb3.Scfld02_0      C 0 I 1021
s caeJap4.Scaffold17084  247052 273 -   375229 tgattCTGCATAGGCCGAA---GCTGATTCATATTAACCACAATATTTGG---------------------------------------CTGATT---CTGCAACTG--------CTGG------------------------------CCAATCGG---------------AGGAGGCTGTAAT------------------------------------------CGTTGGCCTTGCATATTCGCCAGCTGAGCATGTCCGATATTAATGGGATCTCCTTGTAT------GCGAATCTGTACCGGTTGGCCACCTT---GAGCCAACTGATTT------------GCTTGGATCACCTGACCTGGCACGAGCCGGGGT---CC---AGGTGGCTGAATTTGATGGGGCCGTTGAACATTGATTAGTTG-------------GCCCGCCTGC-----
i caeJap4.Scaffold17084 I 28 C 0

a score=4605.000000
s ce10.chrX             4306926 48 + 17718866 TGGTTGAGCATG---------ACAACCTGGAAAAAATTTGGTT-TTCTAAAGTTGTAA
s cb4.chrX              9420555 45 + 21540570 TGATTTATCATA---------Tcaacctgaaaaa---tgatat-ttttgaagttttgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265317 55 -  4500979 TGGTTGAGCATGTCAAGCAGCTCAAACTGAAAGT---TGAGATATTTGGAAGAGgtga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34771 36 +   386604 TGGTGGTGCATT---------CCaggctgaaaaa-----atat-tttcaaa-------
i caeSp111.Scaffold622  I 3 C 0
s caeJap4.Scaffold17084  247325 46 -   375229 TGATTGAGCATG---------TCACGcttaaaaa--tttgtat-tttttaaattaaaa
i caeJap4.Scaffold17084 C 0 I 1152
e caePb3.Scfld02_0      2554430 1021 +  4147112 I

a score=-2026.000000
s ce10.chrX             4306974 20 + 17718866 ----------AGGGAGAAGTTAATTCGACA
s cb4.chrX              9420600 24 + 21540570 tttgaatcaaaagacaaaatcgat------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265372 21 -  4500979 ttt-------cagagaaaatcagTGTCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    34807 20 +   386604 ----------tgtaggaaattcattttaaa
i caeSp111.Scaffold622  C 0 I 30
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I

a score=-3968.000000
s ce10.chrX             4306994 51 + 17718866 GATGGTACGGTACACAGATGGTACGGTGTAATAGA-------CAAAA----ACCAGAATTTT
s cb4.chrX              9420624 30 + 21540570 ---------------------aat--ttttgttgaaatctCACGAAA---------ATGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265393 49 -  4500979 GAGCGT-----------ATGGAAC--TTTGATACATATTTCTCCGAAGTTAATCATACTTGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I
e caeSp111.Scaffold622    34827 30 +   386604 I

a score=-8536.000000
s ce10.chrX             4307045 85 + 17718866 TTTTAAAAATTTTGTAGAATTTATCGTATGTATTGTTTTCTTAAAAAATGGTTT---GCTATGATTAAA--------ATTGCTC-----TCAAATCTCATA
s cb4.chrX              9420654 74 + 21540570 CGCTTAATGTTTTACATCTTTT---TCCTGTCTGACCAGCGGGAAA----GTGTAACATTTTGATAAAG--------ATT------------AGCGAAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265442 78 -  4500979 GTGCAAAAATTGAACACAAATT---GGCtgtatttctcaaaaaaaa----aggt---tttttaaccaaa--------tttattA-----TGAAGCTACACA
i caeRem4.Crem_Contig0  C 0 I 108
s caeSp111.Scaffold622    34857 80 +   386604 -------ttttaaaaaacattt---gaacttttcatttgattaaAA-----------TTTATAATGAAACACTAGGTTTTATAAATACTAGcagtttcata
i caeSp111.Scaffold622  I 30 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I

a score=-4766.000000
s ce10.chrX             4307130 93 + 17718866 -TTTCCGTCAAACTACTATAAAAATTAATATGAGCAAAAAAAAACTTT-----------TTGTTTTTTGTTTTTTG----------ATTTTTGGAATATGGCTACTACAAGCGCA--
s cb4.chrX              9420728 70 + 21540570 -TTCTCG--------------TTTTCTTTGCGTATAAAACATGTATCT-----------T---------CTTTTTG----------ATTTGCAAAATATTAGTG--GCAATagcgaa
i cb4.chrX              C 0 I 155
s caeSp111.Scaffold622    34937 78 +   386604 tttttcg--------------aaatc-------ataaaaaagaaatttcaaacgaAAGGT---------GTTTTTGCGCAAGACTTCCTCACACAATAC-------GCAGCCTCG--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I
e caeRem4.Crem_Contig0  1265520 108 -  4500979 I

a score=296.000000
s ce10.chrX             4307223 9 + 17718866 TTCACTAGA
s caeSp111.Scaffold622    35015 9 +   386604 TTAATGAGA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I
e cb4.chrX              9420798 155 + 21540570 I
e caeRem4.Crem_Contig0  1265520 108 -  4500979 I

a score=-1715.000000
s ce10.chrX             4307232 23 + 17718866 ACTGTCTCTCACCTTACCTCCTC
s caeRem4.Crem_Contig0  1265628 21 -  4500979 ACTGCTGCCCACCTTG--TCGGG
i caeRem4.Crem_Contig0  I 108 C 0
s caeSp111.Scaffold622    35024  2 +   386604 ---------------------AT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  247371 1152 -   375229 I
e cb4.chrX              9420798 155 + 21540570 I

a score=6893.000000
s ce10.chrX             4307255 87 + 17718866 AACTG--TTTTTGAGCGATCAATAGAAT-TGTGTGCGTGCGAGGTCGCCGAAAACCTAATTG-CCGCGCAAATGCCCTTTCTCTTCACTAA-
s caeRem4.Crem_Contig0  1265649 88 -  4500979 AAACGACTGTCGGGAAAATCAATAAAGTGTGTGAGCGGGCGAGGTCACA-GCAATATAATGT-GTGCGCAGAT-ATTCTTGTTTCGTGAGA-
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold622    35026 86 +   386604 AAACG---GTCTTGCCGATCGATAAAACGTCTGCGTGCG-GAGGTCGCACAGAACGTGATGG-ATGCGCAGATCCTCCCTGTCTCAAGGGA-
i caeSp111.Scaffold622  C 0 I 7
s caeJap4.Scaffold17084  248523 86 -   375229 AACCG-CTGTCGAAACGATCGATAA----TGCGTGCGTGCGAGGTCGCCGAAAATCTAATTGCCTGCGCGGAT-ACTCTTGTCACACGCGCA
i caeJap4.Scaffold17084 I 1152 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e cb4.chrX              9420798 155 + 21540570 I

a score=-1290.000000
s ce10.chrX             4307342 8 + 17718866 ACCGATAT--
s cb4.chrX              9420953 8 + 21540570 ATCGGCCT--
i cb4.chrX              I 155 C 0
s caeRem4.Crem_Contig0  1265758 8 -  4500979 ATTAGACT--
i caeRem4.Crem_Contig0  I 21 C 0
s caeJap4.Scaffold17084  248609 8 -   375229 --AGGAATAC
i caeJap4.Scaffold17084 C 0 I 21
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeSp111.Scaffold622    35112 7 +   386604 I

a score=-5078.000000
s ce10.chrX             4307350 15 + 17718866 C-----------------TTGTAAGatattaa
s cb4.chrX              9420961 32 + 21540570 TGGCAGAAATTTGCCTTTCAGGAAGATATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265766 12 -  4500979 C------AATT--------------ATAGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    35119 10 +   386604 ----------------------AACGGTTTAT
i caeSp111.Scaffold622  I 7 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  248617 21 -   375229 I

a score=-16075.000000
s ce10.chrX             4307365  78 + 17718866 gaaataattttttatttgt-----------ttt-----ttttttt--------CAAGTTT-----TGAAAAGTTGCAAATTATGAGA--------------------AAATAAAAATACTTACCCGA
s cb4.chrX              9420993 103 + 21540570 TATTCAA------ACCAGT-----------TCCGAAAGTTTTCTTGGGGAGATGATAATT-----CAAGAAG-TAT-ATTTGTGAATAggtttcggattttcaaacgaaaaaaaattacttacCCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265778  67 -  4500979 Tagagaa------aacagt-----------ttt--cagtgcacttgg------aacattt-----tttgaa---ac-atttatgAAT-----------------------AAAAGATACCTACC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    35129  85 +   386604 GCGAGAA------AACggc---------aattc-----tttttttggaccATTAAAGTTTGAAAGcgagaaattat-tattttgaag---------------------taATAAAAGACTCAcccta
i caeSp111.Scaffold622  C 0 I 146
s caeJap4.Scaffold17084  248638  77 -   375229 -----GA------AACAGTGAAATATCTaatct-----ttgtttt--------ttaatatGAACGCATTAAGTGTT-GTTGGTAGAT-----------------------AAAAGAAACTCACCC--
i caeJap4.Scaffold17084 I 21 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I

a score=-7136.000000
s ce10.chrX             4307443 72 + 17718866 AAATTGAAGCGAAGGACGTCAAGATTACGTCCGGTA-------AATTGTAGCCTCACACGAAGAACACGATTGCCGACG
s cb4.chrX              9421096 72 + 21540570 AACTGATACTGTTCGACGCCAACTACAATTTCGTAG-------ATCCGTATTCGTTGAAGATTGTTCTCGTTACGGGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265845 75 -  4500979 ----GAAATTTCCAGGTGCCGGATACCAATGAGTAGCCGATATATCCGTATTCTTATCGGAAAATTCGGGTCTTCGGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  248715 43 -   375229 -----------------TCCGATAAATAATACGGAG--------------CTCGAGAACGA-----CTAATTGCCGACG
i caeJap4.Scaffold17084 C 0 I 29
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeSp111.Scaffold622    35214 146 +   386604 I

a score=1249.000000
s ce10.chrX             4307515 30 + 17718866 GCCACCCACACGTGTGAAACGCGGAGCAAG
s cb4.chrX              9421168 30 + 21540570 TGGTCCCAATCTCGAAAGAATCGGTTCAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265920 30 -  4500979 TGTACCCGACCTCGAAAGAGTCGGAGAAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeJap4.Scaffold17084  248758 29 -   375229 I
e caeSp111.Scaffold622    35214 146 +   386604 I

a score=-3452.000000
s ce10.chrX             4307545 33 + 17718866 -----------------TCCTCGTTTAACTGCAATTATTTAATAATT-----------------AAT
s cb4.chrX              9421198 43 + 21540570 -----------------GCCTCGAGTAActgta-------aaaaatgttttaatgtGTGGGAAAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1265950 30 -  4500979 -----------------GCCTGTTGTAACTG---------AAAGATG-----------ggataaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  248787 53 -   375229 TCCGCGCTTCACCGTTGACCCCGAGAAACTGCAATTT---AGAAGTT----------TAAATAAAg-
i caeJap4.Scaffold17084 I 29 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I
e caeSp111.Scaffold622    35214 146 +   386604 I

a score=-2118.000000
s ce10.chrX             4307578 25 + 17718866 GAAAAA----------TCGATTA-AA--------------TGCTGCAAGA
s cb4.chrX              9421241 41 + 21540570 -GGCAACAGTGAGAGGTCGATAA-AAGAT-------GACCGCCTGGTAGA
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1265980 31 -  4500979 -gaaaa----------tcgatga-aagaT-------GTTTTAACAGCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    35360 33 +   386604 GGGAAA----------TCAATAATAAGAT-------GTTctaagtgaaga
i caeSp111.Scaffold622  I 146 C 0
s caeJap4.Scaffold17084  248840 39 -   375229 gttgaa----------tcaatta-aaaagaggcacaattctatttcaaaa
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2554430 1021 +  4147112 I

a score=29955.000000
s ce10.chrX             4307603 464 + 17718866  
s cb4.chrX              9421289 589 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0  1266011 573 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    35393 548 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2555451 594 +  4147112  
i caePb3.Scfld02_0      I 1021 I 1
s caeJap4.Scaffold17084  248879 580 -   375229  
i caeJap4.Scaffold17084 C 0 I 133

a score=97755.000000
s ce10.chrX             4308067 417 + 17718866  
s cb4.chrX              9421878 479 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1266584 441 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold622    35941 441 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2556046 433 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  249592 533 -   375229  
i caeJap4.Scaffold17084 I 133 C 0

a score=2261.000000
s ce10.chrX             4308484 4 + 17718866 TTTT
s cb4.chrX              9422367 4 + 21540570 attt
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold622    36382 4 +   386604 tttt
i caeSp111.Scaffold622  C 0 I 24
s caePb3.Scfld02_0      2556479 4 +  4147112 GTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  250125 4 -   375229 TTTT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1267025 30 -  4500979 I

a score=-1327.000000
s ce10.chrX             4308488 27 + 17718866 ACTTTCAAATAAATTCTTTAAGTTTTC
s cb4.chrX              9422371 25 + 21540570 --tttctcCTGTAAAGTTAAACTTTTC
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0      2556483 25 +  4147112 --TATTGGATGAAAATCACAAGTTTTG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  250129 16 -   375229 -----------GAGTACAGAAATTCCC
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    36386 24 +   386604 I
e caeRem4.Crem_Contig0  1267025 30 -  4500979 I

a score=-2689.000000
s ce10.chrX             4308515 4 + 17718866 CGAT-
s cb4.chrX              9422397 3 + 21540570 TAA--
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622    36410 4 +   386604 TGAA-
i caeSp111.Scaffold622  I 24 C 0
s caePb3.Scfld02_0      2556509 4 +  4147112 AGAC-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  250145 4 -   375229 -AACA
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1267025 30 -  4500979 I

a score=76757.000000
s ce10.chrX             4308519 135 + 17718866 T-ACATTTTCGTAAGTAATCCACAAAATCGGTGTTTATAATTCTCATCTCGTCCGTTTCAAAGTGATCGAAATAATTCTCCGCGATGTTGATTATAAACTCTTCTTTTTCAACAACAGTTGTATCAATCTGAAGTA-
s cb4.chrX              9422400 122 + 21540570 ---TAT----------AATCTACAAAGTCTGCATGAACCACTCGCATCTCTTtagtttcaaagtgatcaaAGTAGTTTTCAGCAATGCCGATCatgatttcttctttttctacaaCTGTTGTATCCAGCTGTAAT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1267055 134 -  4500979 T-ACATTTTCGCAAGAAGTCAACAATATCGGCGTGAACGATGCGCATCTGGTCCGTTTCGAAATGATCGAAGTAATTTTCAGCGAGATTTATGataaaatcttctttttccactaCCGTTGTGTCGATCTGTAGG--
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold622    36414 134 +   386604 T-ACATTTTCGTAGGAAGTTAACAACGTCAGAGTGAACTACACGCATTTCATTTGTCTCTGCATGCccaaaatagttttcagcAATATCGATAATGAACTCCTCTTTCTCGACAACTGTGGTATCaatctgaatt--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2556513 135 +  4147112 TCacagttcttcaaaaagtcaacaaCATCTGAATGCACCACACGCAGCTCATTTGTTTCTGCATGTCCGAAATAGTTCTCAGCAATGTTGACAATAAAATCTTCTTTCTCCACTACAGTTGTATCAATCTGAATA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  250149 135 -   375229 -AACTTTTTTGGATATAATCGACAATATCCGCGTGGACAACTTGAAGAttttcagtttcaaagtgATCGAAGTAATTTTCTGCGAGGCTGATTATAAACTCTTCCTTTTCCACAACAGTTGTGTCTATCTGAATC-A
i caeJap4.Scaffold17084 C 0 I 34

a score=-16973.000000
s ce10.chrX             4308654 38 + 17718866 TGT-------AGTAAAAAGTT-------------ATATGTAAAACCG---------------------AAAATCTACCA
s cb4.chrX              9422522 36 + 21540570 CAGAG-----CTTACAA-----------------AACCGGGTTAGTC---------------------AAAGTCAGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1267189 66 -  4500979 TGGaattagtttttcaattat-------------aaatgggtttttttctggatttttttccTCGAAGGAAGTTTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    36548 49 +   386604 tga-------attcaaatgctacatttgatatttaaatggatgaaaa---------------------agaaat--ctc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2556648 50 +  4147112 TAA-------TCTAAGAGGAT--------TATCTAAGCGTTCCAATAGCCGTTGCC------------AAAATT--CTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  250284 34 -   375229 I

a score=55646.000000
s ce10.chrX             4308692 207 + 17718866 ACATTGAGGTAGGATATTTGAGAAAAGAAGTTGCTCATCACTCCACCACCAAGTCCGGCAATTAGAACATCTTGGTGATCGGATTCGTCGAAATTCAGGCTCTG-AAATT---------TTTTCGAG-----GAATACat------------aaaga--aaaactaaacagaaaaagaaat-----a--acactgca---------aaaacaaaa-----------------taaattaacacaa--aat--gtctttaaagccagagaaaaa
s cb4.chrX              9422558 199 + 21540570 ACATTTAGATACGAAATTTCCGACAAGAAGTTGCTCATTACTCCACCCCCAAGGCCGGCAATAAGAATATCCTGGTGTTCATTCTCATCAAAAGATAGGCTCTG-AAACA---------AACT---------GTGCAAATGAGACTATTGGGggaaa--aagcggaaaaaataaaaaaaattca--atgaaataaag---------aaattaaga----------------ccggagaaatgaag--aa------------------------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0  1267255 191 -  4500979 ACATTTAGATATGATATCTCCGACAGAAAGTTGCTCATTACTCCGCCACCAAGCCCAGCAACAAGAACATCGTTGTGGTCATTCTCGTCGAATGTCAAACTCTG-AAACT---------TGCTTAAA-ACGAAGGCAAAT---ACATTTGAAGGAGT--aa----aaccagcaaaataaatttg--a--aaacgaga---------gaa--aaaa----------------cagaagaaa-------aa------------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    36597 248 +   386604 aCGTTCAAATATGAAATCTCTGATAAGAAATTACTCATGACACCACCTCCTAGACCAGCAATTAACACATCGTGAtgctcattttcatcaaatgttaaactctg-aaaacatgttttataactgaaataatagagaaaat-------tcggggaaaa--acgaacaaaaaagaaagaaaagagg--a--aaaccgaa---------aaaggGAGATTGTTCACTCGATGGGCAAAGTAAGCAAAC--AGTAAAGAGGTTCACCcgttgaaaca
i caeSp111.Scaffold622  C 0 I 15
s caePb3.Scfld02_0      2556698 222 +  4147112 ACATTCAAATATGAAATCTCGGATAAGAAGTTGCTCATAACACCGCCTCCAAGTCCAGCAATCAACACGTCATGATGGTCATTTTCGTCAAATGTcaaactctg-aaact-----------ctcgattgataacaaaaat-------tcaataaaaactgagaataaaacaaaaaaaaaagaaggca--gaaccaaa---------aaaaaaaaa-----------------aagaggaacagAA--AGT--GGAGTTTCACCCATCAAAAAA
i caePb3.Scfld02_0      C 0 I 1013
s caeJap4.Scaffold17084  250318 207 -   375229 ACGTTCAGAAACGATATTTCGGACAGAAAATTGCTCATTACTCCTCCTCCAAGACCCGCAATCAGGATATCGTGATGATCATTCTCGTCAAAGTTTAGACTCTATaaaat---------tgttgtaa-----aggaaaac-------gcggggaaaa-taaaaattagaaagaaagaaaggcgg--a--aaaataaatattaacagaaaaagaaa----------------cagaaacaacaaaaacaa------------------------
i caeJap4.Scaffold17084 I 34 C 0

a score=-13127.000000
s ce10.chrX             4308899 56 + 17718866 aaacaaa-----------at-aagttaata-----agaaaaaaa-----aGGC--AATCTGTTTTAAA----TATGAATTTAAG---------
s cb4.chrX              9422766 70 + 21540570 aaacaaaaaaggaaaattat-aaacaaggg-----acaaaaaattata-aagc--aaacactctgaaa-----aataattcaag---------
i cb4.chrX              I 9 I 45
s caeRem4.Crem_Contig0  1267447 69 -  4500979 gaacgaaaaaggggaa--at-gaTCACTCG-----CATAAAAGT-----AAGC--AAACACTAGAGGACTCGGAATGATtcgaa---------
i caeRem4.Crem_Contig0  I 1 I 26
s caeSp111.Scaffold622    36860 82 +   386604 GAATTCAAATCGGAGAGTATAGAATAGGAGGTTCTCGTAAAAGTCATAGAACC--TCTCATGTTTTGTCTTgtgatatttgaaa---------
i caeSp111.Scaffold622  I 15 I 35
s caeJap4.Scaffold17084  250525 81 -   375229 aaacaaaaaaccctgc--at-aacctggaa--------aaaaacCACC-AACCCTAGATATTTTTCTCgttaaaatattttgaatggattacg
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2556920 1013 +  4147112 I

a score=-9205.000000
s ce10.chrX             4308955 28 + 17718866 ----------------------------------------------GATACTTGTGTATTGTAAGCCC----GTAACT-------
s caeRem4.Crem_Contig0  1267542 28 -  4500979 ----------------------------------------------GAATGGTGTTGGGTGTAAAGACAATAGC-----------
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold622    36977 28 +   386604 ----------------------------------------------tgaactttttcagtttaattAC----GCACTT-------
i caeSp111.Scaffold622  I 35 I 1
s caeJap4.Scaffold17084  250606 85 -   375229 gtcacactcatttcaactgtgtccggtcgtgctaactttactcgtggaagagtttgcattttctaggccacagctctccccagct
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2556920 1013 +  4147112 I
e cb4.chrX              9422836 45 + 21540570 I

a score=-12969.000000
s ce10.chrX             4308983 35 + 17718866 ---------AAAATATAAAT---------TAAAACTCCACTTATCA------------TGCTTTT
s cb4.chrX              9422881 53 + 21540570 ---------aaaatataaaaaacaaaaggtCGAATCTCTCAAATCG---GCTCCAGGTCAATTTC
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0  1267570 40 -  4500979 ----------AAGTCTTAA----------TCATATTCTTTTCATTA-----TCAGGGTGaccttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    37006 52 +   386604 ----------AAATTTTAGATTGAAA---TCTCACTTTACAAATTCTTAGTTGAGAGAAAACTTA
i caeSp111.Scaffold622  I 1 C 0
s caeJap4.Scaffold17084  250691 32 -   375229 gagacgagagtaataccaATGG-------CCatactttt--------------------------
i caeJap4.Scaffold17084 C 0 I 200
e caePb3.Scfld02_0      2556920 1013 +  4147112 I

a score=-1820.000000
s ce10.chrX             4309018 6 + 17718866 AAATTA-
s cb4.chrX              9422934 7 + 21540570 TCACCGG
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig0  1267610 7 -  4500979 ttgtttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    37058 6 +   386604 TCATTA-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2556920 1013 +  4147112 I
e caeJap4.Scaffold17084  250723 200 -   375229 I

a score=-2883.000000
s ce10.chrX             4309024 19 + 17718866 -AACGTGA---------TATCCGTTTTCT-----------------
s caeRem4.Crem_Contig0  1267617 46 -  4500979 aatttttgatgtcTTGCTGTAGTTTCCACCAGACATTACGTCATGT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    37064 19 +   386604 -ACTTTTG---------TTTATGTTCCCT-----------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2556920 1013 +  4147112 I
e caeJap4.Scaffold17084  250723 200 -   375229 I
e cb4.chrX              9422941 63 + 21540570 I

a score=-27887.000000
s ce10.chrX             4309043 162 + 17718866 -------------------------------------------TCTTTATGCTCATAAATTTTACATTTC----AAAGCCTGAGAATTCATTATACATAT--ATATTGTCGTAAT----------------TTATTGAAATT--ATT-------------TGAATCGATCCCTCAAAAACCGTTA-AAAATGTTTTGTAATCCA----------------------CTGCACTC--------CGACTGCCCAAACCCAGGAA------AACA------CACCTAG------
s cb4.chrX              9423004 222 + 21540570 -------------------tgttttt--acTGGTAGAcctcattctgaaaatcaaaaagttgcacatttt------------aattttcctcAAACATAA--ATGTTGTCtaaat----------------tttcctaattttagTTGTGTTC-TACCAGAAAAGCA--TTCTTGAATACGCTCAAAATATTATTAGCAACCTATCCATTAACCGGATTATCGTGAttgctcacttttt---ttatggaaaaaaaccGGAGTCTCCAAAACA------TATTCAA------
i cb4.chrX              I 63 C 0
s caeRem4.Crem_Contig0  1267674 205 -  4500979 -------------------CATAATC--ACTGGAAG-------TTTGGCTATCGAACA-----ACATCTT-----------GAACATTCTTTGGATAAAGTCATATACTCGCAATGCACACCGTTCCACTGTTTGCTACTTTTCGTT-------------------------TCGAATAC------CATATCTCTGTTAAATTTTTCTGCAGAAGGATTAC-----TTGTCCACTTTTGGGATTACTATCCAAACGCAAGTTCATCGTAACAATCCCCCACTCAA------
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622    37083 232 +   386604 TGCAGATTCCCTTACATCTTGTTATTCAATTGAGAC-------ATTGCAGATCAAAAGACT--ATAATTTGGCTGTCACCTGATTTTGTTTTAGATTAAC--GTACTCAGACATT----------------TcagtaatttttaattctgcTCATTTCAACTAATGAGCTTCTCGAA---------GATATCGCCTTTGAATCATCTTTCTGA---------------GTACCCGTCTCGACTAATCAGCACACCCCGCACACGTC--AACG------TATTCAAGGAAAG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2556920 1013 +  4147112 I
e caeJap4.Scaffold17084  250723 200 -   375229 I

a score=-4527.000000
s ce10.chrX             4309205  9 + 17718866 -----------TTGACAC----CA
s cb4.chrX              9423226 19 + 21540570 GAATTATC-----CACATTTTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1267879 24 -  4500979 CAAAAACTGGGAACACACATTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    37315  9 +   386604 -----------ATCACAC----AA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2557933  9 +  4147112 -----------tttgcAT----AA
i caePb3.Scfld02_0      I 1013 C 0
e caeJap4.Scaffold17084  250723 200 -   375229 I

a score=100557.000000
s ce10.chrX             4309214 116 + 17718866 ACTCACGTTCATTATGAATCCAGATGCAACGAGGAGTCTTGCGTATCTCGAGTTGATCACAAGTTTATTAACAGGCCAATTTCTTGAGTCAAGATTGTTCCACGAAACTGCTGAAA
s cb4.chrX              9423245 116 + 21540570 ACTTACGTCCATGATGAATCCGGCAGCTACAAGAAGTCTTGCGTATCTGGCATTAATCACAACCTTGTTCACAGGCCATTCTCTGGAGTCAAGGTTATCCCAATTTAccgctgaaa
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0  1267903 116 -  4500979 ACTCACCTCCATGATGAATCCTGCAGCAACAAGAAGTCGAGCGTATCTTGAGTTGATTACGAGCTTATTAACCGGCCAATCTCTGGAGTTGGTATTCTCCCAAGACACCGCTAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    37324 116 +   386604 ACTCACGTCCATGATGAATCCAGAAGCAACAAGAAGCCTTGCGTATCTAGAGTTTATGACCACCTTGTTCACTGCCCAATCTCTAGAATCAAGATTTTCCCACGAGACTGCTGAAA
i caeSp111.Scaffold622  C 0 I 34
s caePb3.Scfld02_0      2557942 116 +  4147112 ACTTACCTCCATGATGAAACCAGAGGCGACGAGAAGTCTTGCGTATCTCGAGTTAATCACAACTTTGTTAACTGCCCAATCTCTCGAATTAAGATTCTCCCACGACACAGCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  250923 116 -   375229 ACTCACCTCCATGATAAATCCAGAAGCGATGAGAAGACGTGCGTATCTGGAGTTGACGACAAGCTTGTTAACAAGCCAATTTCTGGAATCTAGGTTTTCCCACGAAACATCTAAAA
i caeJap4.Scaffold17084 I 200 C 0

a score=67.000000
s ce10.chrX             4309330 1 + 17718866 C
s caeRem4.Crem_Contig0  1268019 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2558058 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  251039 1 -   375229 C
i caeJap4.Scaffold17084 C 0 I 2
e cb4.chrX              9423361 39 + 21540570 I
e caeSp111.Scaffold622    37440 34 +   386604 I

a score=165.000000
s ce10.chrX             4309331 3 + 17718866 AAT
s caeRem4.Crem_Contig0  1268020 3 -  4500979 AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2558059 3 +  4147112 CAT
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17084  251040 2 -   375229 I
e cb4.chrX              9423361 39 + 21540570 I
e caeSp111.Scaffold622    37440 34 +   386604 I

a score=250.000000
s ce10.chrX             4309334 13 + 17718866 TTTATGTTGGCAA
s caeRem4.Crem_Contig0  1268023 13 -  4500979 tggaaatttgcaa
i caeRem4.Crem_Contig0  C 0 I 17
e caePb3.Scfld02_0      2558062 31 +  4147112 I
e caeJap4.Scaffold17084  251040  2 -   375229 I
e cb4.chrX              9423361 39 + 21540570 I
e caeSp111.Scaffold622    37440 34 +   386604 I

a score=0.000000
s ce10.chrX             4309347 193 + 17718866 CTATATTTTAATTTTATTAAAGAAATGAGACCATCGTTGTTATAGTTGATAGTTTTTTAAAAAACTATTTTAAGTTGTTCGAAATTTAGAATTTATTGAGTTTATAAGTTTTATGATCTAGAGAAGAACTCGTTATTAAATCAATAAGAAACACAATTTGACAAAAAGCTCTTACATCACACTCAAAAATACA
e caePb3.Scfld02_0      2558062  31 +  4147112 I
e caeJap4.Scaffold17084  251040   2 -   375229 I
e cb4.chrX              9423361  39 + 21540570 I
e caeSp111.Scaffold622    37440  34 +   386604 I
e caeRem4.Crem_Contig0  1268036  17 -  4500979 I

a score=1158.000000
s ce10.chrX             4309540 35 + 17718866 GCAATTGTTTAATTTTTGGTTTTATCTGCTCAAAA
s caeJap4.Scaffold17084  251042 35 -   375229 GCACTTGATTATTTACTGATGATGATTGCTCAGAA
i caeJap4.Scaffold17084 I 2 C 0
e caePb3.Scfld02_0      2558062 31 +  4147112 I
e cb4.chrX              9423361 39 + 21540570 I
e caeSp111.Scaffold622    37440 34 +   386604 I
e caeRem4.Crem_Contig0  1268036 17 -  4500979 I

a score=273.000000
s ce10.chrX             4309575 1 + 17718866 A
s cb4.chrX              9423400 1 + 21540570 a
i cb4.chrX              I 39 I 1
s caeJap4.Scaffold17084  251077 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2558062 31 +  4147112 I
e caeSp111.Scaffold622    37440 34 +   386604 I
e caeRem4.Crem_Contig0  1268036 17 -  4500979 I

a score=0.000000
s ce10.chrX             4309576 1 + 17718866 A
e caePb3.Scfld02_0      2558062 31 +  4147112 I
e caeJap4.Scaffold17084  251078 0 -   375229 C
e cb4.chrX              9423401 1 + 21540570 I
e caeSp111.Scaffold622    37440 34 +   386604 I
e caeRem4.Crem_Contig0  1268036 17 -  4500979 I

a score=77123.000000
s ce10.chrX             4309577 92 + 17718866 ACTTACGTTTCACTGACTCAACTTCCACTCCTGTCAGAGAATATTCAGTATTTTCCTCAAGAAGTAGATCTCGCTTTGTGGTTAATCTGTAA
s cb4.chrX              9423402 92 + 21540570 actCACGTTTTGTAGATTCCACCTCAACACCTGTTAACGAATACTCGGTGTGTTCTTCAAGCAAAAGATCACGTTTTGTAGTCAACCTGTAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1268053 92 -  4500979 ACTCACGTTTGGTAGATTCCACCTCAACTCCTGTTAATGAATACTCAGTATTTTCTTCTAGCAATAGATCTCTTTTGGTGGTCAATCTGGAA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold622    37474 92 +   386604 ACTTACGTTTAGTTGATTCAACTTCCACTCCGGTCAATGAATATTCGGTGTTCTCTTCAAGCAAAAGATCTCTTTTGGTGGTTAGCCTGTAA
i caeSp111.Scaffold622  I 34 I 1070
s caePb3.Scfld02_0      2558093 92 +  4147112 actcacGTTTGGCTGATTCTACTTCAACACCGGTTAACGAATATTCAGTGTTCTCTTCAAGCAAGAGGTCACGTTTGGTCGTTAACCTGGAA
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17084  251078 91 -   375229 -CCTACCTTTGTTCGATTGAACTTCAACACCAGTTAGCGAATATTTGGTGTTGTCCGCAAGTAAAAGGTCTCGTTTCGTGATTAATCTGAAA
i caeJap4.Scaffold17084 C 0 I 1510

a score=-1985.000000
s ce10.chrX             4309669 1 + 17718866 G-
s cb4.chrX              9423494 1 + 21540570 -G
i cb4.chrX              C 0 I 1425
s caeRem4.Crem_Contig0  1268145 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2558185 1 +  4147112 A-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e caeSp111.Scaffold622    37566 1070 +   386604 I

a score=-1690.000000
s ce10.chrX             4309670 139 + 17718866 TTCTGCCCATCAG-AATCACATGAGA-----------------------CAAATAATACTG------AATTCAGTAACATTTTGGTG----CAATGATGTAG----------CATGCAACGATCAATCGATTGACTGTCGTGTGTGG--------AAAGCAAAT---TTTTGCGGAACGATGAACCGTGGGAGC
s caeRem4.Crem_Contig0  1268146 173 -  4500979 --------ATTAGTCATAGTCTGTTGGATCAGAAATCGCATTCCTGTTTCAATCAATGTGGCTC---------CCAATACGTGGTTGAATAAAAGGATGTTGATGATAGAGTCATGGAATAAT-GATAAATCAAT---AGGGAATGGCGTGTCAAAAGACACATACACATTTCGGGGCGATGAATTGTGGATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2558186 151 +  4147112 --------ATGAGGAGTAGTAGGTAG-----------------------CAGTTCATGTGGCTCAGAAATGTAACATTGTTTGTGTGGCGTTAACGATGATAGGTATACTGACAGGTAACGATCAATAAATTGAC---AAGAAAAGG--------GAAGCATATGC-CGTTTCGGGGTAATGATTTGTGGAAGC
i caePb3.Scfld02_0      C 0 I 1576
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e cb4.chrX              9423495 1425 + 21540570 I
e caeSp111.Scaffold622    37566 1070 +   386604 I

a score=549.000000
s ce10.chrX             4309809 25 + 17718866 CACTCCTTTTTTTGTATGGAAGCAA
s caeRem4.Crem_Contig0  1268319 23 -  4500979 ACCTC--GTGTTGGTATGGAAGCGA
i caeRem4.Crem_Contig0  C 0 I 1976
e caePb3.Scfld02_0      2558337 1576 +  4147112 I
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e cb4.chrX              9423495 1425 + 21540570 I
e caeSp111.Scaffold622    37566 1070 +   386604 I

a score=0.000000
s ce10.chrX             4309834 325 + 17718866 CCAGAAAAGGAGTAGAAATGTTGAACATTTTGGTATATTGGATAAGGAGATGCGTATAGTCTAGTAAAGTATATTTCATTTCATCAACATTTTTTCAGAATGTCAAAATCTGACTAATAAAGTCAGTTCTGTGCGGATGCTTGAAACTTTAACAGTTCAGTTCACTAATGCATCTTTTAAATTTAATTTCCTTCTTACACGTAAAAGGCTTACAAGAAAAATCGGCAATGAGGCGTATTTAACAGCTCCTAATCAAGCCCAGGAAATTATATTTTCTCTAAAAAGACCCATTTACTCTAAAGGGTCATGAAACCCCGATAATGGC
e caePb3.Scfld02_0      2558337 1576 +  4147112 I
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e cb4.chrX              9423495 1425 + 21540570 I
e caeSp111.Scaffold622    37566 1070 +   386604 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=537.000000
s ce10.chrX             4310159 28 + 17718866 TTTTTTGATGAAAGCCGACATTCAATAA
s caeSp111.Scaffold622    38636 25 +   386604 TCTTCTAATGGAGGCTCACA---AAAAG
i caeSp111.Scaffold622  I 1070 C 0
e caePb3.Scfld02_0      2558337 1576 +  4147112 I
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e cb4.chrX              9423495 1425 + 21540570 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=-1414.000000
s ce10.chrX             4310187 37 + 17718866 ------------GCTGAGATAAATGAGA-CTCCATTACATGAAATGGTTC
s cb4.chrX              9424920 37 + 21540570 ------------GTTGCTATAATTGAGAGCTCCATGACatttaat-tttg
i cb4.chrX              I 1425 C 0
s caeSp111.Scaffold622    38661 45 +   386604 ACCAATGAAAACGAGGTCATTATTCGTGTCCCTATGA----GAAC-attg
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2558337 1576 +  4147112 I
e caeJap4.Scaffold17084  251169 1510 -   375229 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=-5420.000000
s ce10.chrX             4310224 61 + 17718866 TTTTTCTGGTTTTTTTTCGCATC-----CTCCAGC----------GTAAATTCAAACATTTTAAAT-AATAGTT----CCA
s cb4.chrX              9424957 65 + 21540570 tcttttccatttttttccatttt---gtttcGCTA----------GTCACATCACATCTGTCAACCGAAAAGTTAGCT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    38706 58 +   386604 tttctttgattttattcaattttttgattttagtt----------GTAACATAATATATTT------AGATGTT-------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  252679 56 -   375229 tttctctttttttctttcacatG---CTCTTTGGCCAGAAATAAAGTAAAACCATTCTT----------------------
i caeJap4.Scaffold17084 I 1510 C 0
e caePb3.Scfld02_0      2558337 1576 +  4147112 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=54240.000000
s ce10.chrX             4310285 105 + 17718866 TACCTTCCATTTTCTAAGAAATAAGAGTCAACAATTAGAAAACAAGTGTCTTTTCCTGGAATACATTCCTTCCCCACAACTTGGTGTTTCTGAAACGAT------TTTGTT
s cb4.chrX              9425022 105 + 21540570 TACCTTCCATTTTCTAAGTAGTAAGAGTCGACAATCAGGAAGCATGTATTGGTATCCGGGATGCATTCTTTTCCGACAAGTTGATGTTTCTGGAACCTT------TTTGTT
i cb4.chrX              C 0 I 700
s caeSp111.Scaffold622    38764 105 +   386604 TACCTGCCGTTTTCCAAGTAGTATGAGTCGACAATCAGAAAACATGTAGTTGTGTCTGGAATACATTCCTTCCCAATCACTTGATGCTTCTAAAAATCT------CTTTAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2559913 111 +  4147112 TACCTTCCGTTTTCCAAGTAATATGAATCGACTATCAAGAAGCATGTGGTTGTTTCCGGAATGCATTCTTTTCCAATCACTTGATGTTTCTATAGTTttatgatgttttct
i caePb3.Scfld02_0      I 1576 C 0
s caeJap4.Scaffold17084  252735 105 -   375229 TACCTATTATTTTCGAGATAATATGAGTCGACAATCAAGAAGCATGTTGTTGTTTCCGGAATGCATTCATTTCCAATTACTTTGTGCTTCTGTAAGTTT------TTAGTT
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=-3626.000000
s ce10.chrX             4310390 14 + 17718866 TCAACTTT-------------GAGTTT
s caeSp111.Scaffold622    38869 21 +   386604 TTTATATAACCG------AATCATTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2560024 14 +  4147112 ttttttta-------------cttttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  252840 24 -   375229 ---ATATAATAGTAAAACAGAAACTTC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9425127 700 + 21540570 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=40932.000000
s ce10.chrX             4310404 110 + 17718866 ATCGAACAA--TACCTTTTTTAAAAGCTCGTCCACTGGATCACCTTTTTCTTTTGAGGTGAATTTGAAAAAGCCGAAGTCGAAAGTATCAAAGTACCATGCTAGAATCTGGA
s cb4.chrX              9425827 112 + 21540570 ATCAAACCAGGTACCTTTTTGAGTAGCTCATCCACCGCGTCTCCTTTCTTCTTTGATGTATATTTAAACAGCCCAAAATCAAATGATTCATAATACCAAGCCAACACCTGAA
i cb4.chrX              I 700 C 0
s caeSp111.Scaffold622    38890 106 +   386604 AT------GCCTACTTTTCTCAGTAGCTCATCTACAGCatctcctttctttttcgacGTGTATTTGAACAAGCCGAAATCAATTGTATCAAAATACCATGCTAGTacctgaa
i caeSp111.Scaffold622  C 0 I 27
s caePb3.Scfld02_0      2560038 112 +  4147112 ttccaATGGATTACCTTTTTGAGAAGCTCATCTACCGCATCTCCTTTCTTTTTGGATGTATActtaaaaaatccaaaatcgaaTGTGTCGAAATACCAAGCCAGCatctaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  252864 110 -   375229 TTCGCACCA--AACCTTTTTCAATAATTCCTCGACTGCAGTTGTGCTCTTTTTTGAAGAGTTCCCAAAACCTCCAAACGAAAAACTGTCGAAATACCATGCAAGTACCTGAA
i caeJap4.Scaffold17084 C 0 I 2315
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=-497.000000
s ce10.chrX             4310514 3 + 17718866 AAA-
s cb4.chrX              9425939 3 + 21540570 TAA-
i cb4.chrX              C 0 I 31
s caePb3.Scfld02_0      2560150 3 +  4147112 -aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e caeSp111.Scaffold622    38996 27 +   386604 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=97.000000
s ce10.chrX             4310517 6 + 17718866 TTGATA
s caePb3.Scfld02_0      2560153 6 +  4147112 tgaaca
i caePb3.Scfld02_0      C 0 I 93
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9425942 31 + 21540570 I
e caeSp111.Scaffold622    38996 27 +   386604 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=0.000000
s ce10.chrX             4310523 1080 + 17718866  
e caePb3.Scfld02_0      2560159   93 +  4147112 I
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9425942   31 + 21540570 I
e caeSp111.Scaffold622    38996   27 +   386604 I
e caeRem4.Crem_Contig0  1268342 1976 -  4500979 I

a score=91.000000
s ce10.chrX             4311603 1 + 17718866 A
s caeRem4.Crem_Contig0  1270318 1 -  4500979 A
i caeRem4.Crem_Contig0  I 1976 C 0
e caePb3.Scfld02_0      2560159 93 +  4147112 I
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9425942 31 + 21540570 I
e caeSp111.Scaffold622    38996 27 +   386604 I

a score=1498.000000
s ce10.chrX             4311604 8 + 17718866 ATAATAAC
s caeRem4.Crem_Contig0  1270319 8 -  4500979 ATCAACAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    39023 8 +   386604 ATATTAAC
i caeSp111.Scaffold622  I 27 C 0
s caePb3.Scfld02_0      2560252 8 +  4147112 atcaaaac
i caePb3.Scfld02_0      I 93 C 0
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9425942 31 + 21540570 I

a score=45197.000000
s ce10.chrX             4311612 224 + 17718866 TTACAATAGCCAGACCTACAATAGTGACTTGAGGAAGAATTGCAGGATGCATTTGAAGA---AGAAGAAGACCCTCCGTTTCAAAATGATCCCAATTTAATGTGCTCTGTGCACATCTTTGTATAGCTG---CCATTGT--------GATACAGTTTCCCCTCAAAT----TTTTGCAAAA--AGTACAATGTTTGCA---AAGCGTTGCCAAC-----GAAT---------C----GAAAGGGAAATTAGTTTCTGAAAGAGGA-
s cb4.chrX              9425973 247 + 21540570 TTACCAGTGCCGCAATGAGAACAGAGACGTGAGGAAGAAGCCTGGTCTGCATTTCAAGATGGTGGAGCCGACTAACCACCTCAAAATGACTCCAATTAACTGTGCCATGTTCGTCAATTTGCACAGCCG---CC------TGTCCGtgataca---tttttttggattccgtTTTGCAAAACTAATACGTTATTTGCA---CTGCATCGGAAATGTG--GGATTGTGGAAACTAGCAAagagaaaaatcagttt-tgagctgaaa-
i cb4.chrX              I 31 I 5
s caeRem4.Crem_Contig0  1270327 242 -  4500979 TTACAATTGCGGCCAGTAGAACTGATACATGAGGAAGGAACCTGGTATGCATTTCAAGA---TGAAGATGACTATCCGCCTCGAAATGATTCCAATTTGTGGTATCGTGTTCCGCAATTTGTACAGCTG---CCATTGCTTGCCCGTGTAACA---TCCCGTCGAGT----TTTTGCAAGA--AGTGCATTATTTGCAAGCCATCATTGGCAATGAGCTGAAT----GAAATT----GAAGGGAAAGTCAGTTTCTGAATAGgga-
i caeRem4.Crem_Contig0  C 0 I 1275
s caeSp111.Scaffold622    39031 228 +   386604 TCACAATAGCAGCAAGTAGAATAGAGATATGAGGCAAGAACTTGGTCTCCATTTGAGAC---TGGAGATGATTTTTCTCTGTAAAATGACTCCAATTTGGTGTGTCCTGTGCTCCTCTTTGCACAGCTG---ACATTGCCTGTTCTCGATACA---TTTCATCGAAT-----TTTGCAAAA--AGTACACCGCTTGCC---ATTGCTT--CCTAACA--GGAT--------------GAGATGAAATCCGTCTA-AAAACTGGTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2560260 226 +  4147112 ttaCAAGAGCGGCGAATAGAATTGAAACATGAGGGAGAAACTTGGTTTCCATTTGAAGA---TGGAGATGGCTTTCTGCTTCAAAGTGATTCCAACTGGATGTGTCCTGTACTCCCGTTTGCACAGCTGTCAGCATAGCCT------GATACA---TTCTGTCGAac-gaaatttgcaaaa--aatataatatttgtC---GTCCTTTAGCCAGAAA--AGAT--------------ATGTCGGAAAGCGATTT-A-----GTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  252974 2315 -   375229 I

a score=-2504.000000
s ce10.chrX             4311836 48 + 17718866 -----AACGAAAAGTGCTAGTTGGTAGAGTGTGTG------AAAGAGAGGATAAAGGTT
s cb4.chrX              9426225 54 + 21540570 CAAAAGGGCGAGTATGAAA-TATGAAAACAAT----TGTgagaaaaatggataaaaGTT
i cb4.chrX              I 5 I 1780
s caeSp111.Scaffold622    39259 49 +   386604 -----AGGGAAATACGAAGttaagaagaaagaata-ggAGAAATAAGAGGATGAA----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2560486 45 +  4147112 -----AAGGGAATAAGCCAGTATGAGAAAAGTGTGTGAAGAAGAAAGTGG---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e caeRem4.Crem_Contig0  1270569 1275 -  4500979 I

a score=2470.000000
s ce10.chrX             4311884 20 + 17718866 TTAGATTATGGCGTGTGAAA
s caeSp111.Scaffold622    39308 19 +   386604 -AAGGTATAAGTGTGTGAAA
i caeSp111.Scaffold622  C 0 I 1078
s caePb3.Scfld02_0      2560531 19 +  4147112 -AAGGCAAGAGTGTGTGAAA
i caePb3.Scfld02_0      C 0 I 1424
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9426279 1780 + 21540570 I
e caeRem4.Crem_Contig0  1270569 1275 -  4500979 I

a score=0.000000
s ce10.chrX             4311904 1651 + 17718866  
e caePb3.Scfld02_0      2560550 1424 +  4147112 I
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e cb4.chrX              9426279 1780 + 21540570 I
e caeSp111.Scaffold622    39327 1078 +   386604 I
e caeRem4.Crem_Contig0  1270569 1275 -  4500979 I

a score=179.000000
s ce10.chrX             4313555 15 + 17718866 TCCGAGCACTAACTC
s cb4.chrX              9428059 11 + 21540570 TCCGACCATTA----
i cb4.chrX              I 1780 C 0
e caePb3.Scfld02_0      2560550 1424 +  4147112 I
e caeJap4.Scaffold17084  252974 2315 -   375229 I
e caeSp111.Scaffold622    39327 1078 +   386604 I
e caeRem4.Crem_Contig0  1270569 1275 -  4500979 I

a score=117233.000000
s ce10.chrX             4313570 146 + 17718866 TGTGAGAA-TCC-ATATTCTCATATCTTAAATAGTTTTC---ATTCAT-----ATTTCCCGT-CC--CGCATGACTG-----GGCTCA--CGCTACC---TAGTTTCCCACGATCATGCCAAATTATGCTACGAAGTACAG-CTTCTTTGAAGTATGTATAAATAACTTT
s cb4.chrX              9428070 166 + 21540570 tgtgaaaattcc-gattttcaatatctcgAATATTCTCCCCTATTCatccagaaactttttt-cccgCGCGTGACTGATGGAGGCTTACCCGCCGA-AAGACGTTTCCCACGATCATGCCAAATTAGGCCACGAAGTACAG-CTTCTTCTGAGTGTGTATAAATAACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1271844 153 -  4500979 TGTGAGAA-TCC-GATTTTTCATATCTCGAATATTCTCC---ATTCATCGG-------TTTT-CC--CGCGTGACCGATGGAGGCTAA--CGCCGACCAGTAGTTTCTCACGATCATGCCAAATTAGGCTACGAAGTACAGCCTTCTCCAGAGAGTGTATAAATAACTTT
i caeRem4.Crem_Contig0  I 1275 C 0
s caeSp111.Scaffold622    40405 155 +   386604 TGTGAGAA-TCG-GGATTCCTATATCTCcaatattttct---attcac-----aATTCTTTTGCC--CGCGTGACCGATGAAGGCTAA--CGACGGCCAGTAGTTTCTCACGATCATGCCAAATTAGGCTACGAAGTACAG-CTTCTCTGAAGTGTGTATAAATAACTTT
i caeSp111.Scaffold622  I 1078 C 0
s caePb3.Scfld02_0      2561974 155 +  4147112 TGTGTGAA-TCGAAGATTTTCATATCTCCAATATTCtcc---attcat-----aattttttt-cc--cgcgTGACCGATGAAGGCTAA--CGACGACCAGTAGTTTCTCACGATCATGCCAAATTAGGCTACGAAGTACAG-CTTCTTCAGAGAATGTATAAATAACTTT
i caePb3.Scfld02_0      I 1424 C 0
s caeJap4.Scaffold17084  255289 155 -   375229 TGTGAGAA-TCT-AAACTCTCATATCTCGAATATTCTTC---TTCCATTCATAGGttttttt-CC--CGCGTGACTGCC---AGTTCA--CGCCGTCTAGTAGTTTCTCACGATCATGCCAAATAAGGCCGAGAAGTACAG-CTTTTCC-GAGGGTTTATAAATAACCTT
i caeJap4.Scaffold17084 I 2315 I 545

a score=14905.000000
s ce10.chrX             4313716 367 + 17718866 ---TTATATCT-----CTTTTCATAC-TTTGCGTGAATTAGTTC---AGCATTATTGAGGC----CTTTTGCGATT----------CATA--TTCTCA----CAATGTTAGCAACATCCATCCTTCTGAGTTCTTATTCAA--TTTGATGCCGCCAAAGTTACTGGAATTCGATGCTG-CACTTTCCATTTTTTTTTCCATTAGCTTCTTTAACACTCGTTCTTGTTTTGACTCACATTTTAGTTTCGAGAATCAACGTC-------AAGTGACAACAAGACATGCGATGACCAGAATCAGTTATCTAAATACGAGTTGTGC--------TGAGAGCCTTCTTGAGTA----CTACTA----------CCTCCTCTTCTATTTCAATCTTCAAAT------AAAC------TTCATACAATCA----TATGTGTGTTTATCCTTT------------GC
s cb4.chrX              9428236 336 + 21540570 GCTCCATATTTCGCAGCTTTTCATACTTTTCTGTGCACAAGTTCAGGAGCGCATTTAAGATTCTGCTTTCTGGCTCCCGTGTGGTTCATACTTGCTCAAGTTCTCCTCactcattttcca------gaaattccgcATTAT----TG-----ACTCGCTTTTCTCGG-----GTTTCG-TGTTTTTAT----TTTGCACGGTACAT-------AATACgcagt--------------------ttttcagaatgaa-----------aagtCACAACAA-------GATGACCAGaacaaaatttctga-------------------ttcGAGAGCC-CCTTGAGTACTCGGTCCTCTGCACGA-------ATATT---TTCTCATATTCCTAT-ACT--AAACTT----CTCATCCCATCG----TGTATATGTTTGACCTTC------------AC
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig0  1271997 364 -  4500979 ------TATCTTGCG---TTTTATAC-TTTCCGTGCATAAGTTCACAGCTTTCATAAAGATT---CATTCAAGATTCC--------CATTCTTACTCA----CTTTTCTCGCAGTATGTG------CAATTTTCTTCTGAC-----------GCTCGGATTCTTAGGAAATTATTTCG-TACTTTCCA----TTTCTATAACAGCT-------CACTCGGAGTTGTTGTTACGAACA----AGTTTCGAGAATGCA-----------AAGTCACAACAAGTCGTGCGATGACCAGAATCAAATTCCTGACTGCGTGTTTTGC-TTAGGTTTAAGAGCCTCCTTGAGTA----GCTCTATGGGTAACGTCGCCATCTTCAATTTGAATACTCGGAT-GCTGAGAAATA----TTCATTCAATCA----TATGTATGCTTACCCTTT------------GC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    40560 372 +   386604 ------TATTCCAcg-cttttcattc-tttttgtgCAAATGTTC--AAGCGCTTTCGAGATT---CTTCTGAGATT----------CATA--TTCTCA----CCATGCGC----------------AATTTTTCTGCTTACGCTTTG-----GAAAGAGttc--aagaaattattttg-taCTCTCCA----TTGCCATAACAGAT----TAATACTTCAAGTTGTTATGTCAAAAG------TTTCTGCGGTGG------------AGGTCACAACAAGGCACTGAATGCTTagaatcaaagttttcaatgcATGTTTTGCAGTTGGTTCGAAAAGCTCCTTGAGTA----GCACTATAAGCATCGTCCTCATCTTCAATTTTACTAAGGAGAGCAGTTGAAAATATCCCCTTCTTGAATCA----TATGTATGCTTACCCTTTCATATCCTTCTCGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2562129 362 +  4147112 ------TATTCC-CG-CTTTTCATGC-TTTTTCTGCATGAGATTGAAAGGTCTTTCAAGATT---C------GGTT----------------TTCTCA----CTGTGagc--------ca------aaaatttct--------tttg-----agtGAAGTTCTTGAGAAATTATTTCGTTATTTTGCA---CTTTCAATAACAGCT----TAATAACCAAAGTTGTTGTGACCGAA-------TTGCTGAAATGGACAGCGAAATTCAATTCATAACAACACGTACGATGACCAGATTCAAATTTATGAATGCATGTTTTGC-TTCGGTTTAAGAGCCTTCTTAAGTA----GCACTATGAGCACCGTCCTCATCTTCAATTTCACTACGCCCTG-AgttgaaaatatatatttcttCAATCATATTTATGTATGCTTAACCTCT------------GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  255444 545 -   375229 I

a score=-1907.000000
s ce10.chrX             4314083  6 + 17718866 -------------TCCGCT
s caeRem4.Crem_Contig0  1272361 18 -  4500979 TATACTTCCTTCTTTAAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    40932  6 +   386604 -------------TCAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2562491  6 +  4147112 -------------TTAGTT
i caePb3.Scfld02_0      C 0 I 232
e caeJap4.Scaffold17084  255444 545 -   375229 I
e cb4.chrX              9428572 218 + 21540570 I

a score=2309.000000
s ce10.chrX             4314089 14 + 17718866 AGATGACCTATTTC
s caeRem4.Crem_Contig0  1272379 14 -  4500979 AGATGACCTGTCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    40938 14 +   386604 AACTGACCTGTTCC
i caeSp111.Scaffold622  C 0 I 254
e caePb3.Scfld02_0      2562497 232 +  4147112 I
e caeJap4.Scaffold17084  255444 545 -   375229 I
e cb4.chrX              9428572 218 + 21540570 I

a score=333.000000
s ce10.chrX             4314103 21 + 17718866 CTTAAACGCAATCTTAGTCTG
s caeRem4.Crem_Contig0  1272393 21 -  4500979 CCaaaaaaaTATCTCATGCTG
i caeRem4.Crem_Contig0  C 0 I 220
e caePb3.Scfld02_0      2562497 232 +  4147112 I
e caeJap4.Scaffold17084  255444 545 -   375229 I
e cb4.chrX              9428572 218 + 21540570 I
e caeSp111.Scaffold622    40952 254 +   386604 I

a score=0.000000
s ce10.chrX             4314124 739 + 17718866  
e caePb3.Scfld02_0      2562497 232 +  4147112 I
e caeJap4.Scaffold17084  255444 545 -   375229 I
e cb4.chrX              9428572 218 + 21540570 I
e caeSp111.Scaffold622    40952 254 +   386604 I
e caeRem4.Crem_Contig0  1272414 220 -  4500979 I

a score=621.000000
s ce10.chrX             4314863 68 + 17718866 AAAGTTTGAAACATAACTAATTCATTTTCATTTAAATTTCTCAATAATGATTGTGAT---CTGACATATAT
s caeJap4.Scaffold17084  255989 64 -   375229 AAATTCTGAGA---ACTTAATTCATTATTATAT---TTTCTCAAAGGTTACTCtcattttcttgcattt-t
i caeJap4.Scaffold17084 I 545 C 0
e caePb3.Scfld02_0      2562497 232 +  4147112 I
e cb4.chrX              9428572 218 + 21540570 I
e caeSp111.Scaffold622    40952 254 +   386604 I
e caeRem4.Crem_Contig0  1272414 220 -  4500979 I

a score=453.000000
s ce10.chrX             4314931 8 + 17718866 GTTCACTT
s caePb3.Scfld02_0      2562729 8 +  4147112 gttttcca
i caePb3.Scfld02_0      I 232 C 0
s caeJap4.Scaffold17084  256053 8 -   375229 cttcactt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9428572 218 + 21540570 I
e caeSp111.Scaffold622    40952 254 +   386604 I
e caeRem4.Crem_Contig0  1272414 220 -  4500979 I

a score=424.000000
s ce10.chrX             4314939 29 + 17718866 ---------CGTTTCCTTGAAGTCTTGTTGTTTTTTTG
s caeRem4.Crem_Contig0  1272634 29 -  4500979 ---------cgttacgttgaaggttttcttcctttttc
i caeRem4.Crem_Contig0  I 220 I 4
s caePb3.Scfld02_0      2562737 24 +  4147112 ---------cgttaggttgaagtttttcttc-----tc
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  256061 36 -   375229 ttttctttccaatctgtgcgtgtttttgttcttttt--
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9428572 218 + 21540570 I
e caeSp111.Scaffold622    40952 254 +   386604 I

a score=217922.000000
s ce10.chrX             4314968 340 + 17718866 -------------------TCCCATGTGCCTACTCAGTATGCCAAACAAGGAAAAAA-ATGAA----AGCCGAAAAACCCGTGTGCATAGAAAAAAGAAAGAGAAGAGAGGAGAGCACAACTTGATTAGTCTAATCAGAACATCGGTGAATCCGCGCGGCGGGGCCCTGTCTTCGT---TGTTGC-TTTTCATCG-------CGCCTGCAACTCTTTGATTCAATTTATTGCTCTCCGAC---GGA-ACAAAAAAAAT---------------------GGAGAAAAAAAAA--AGAAAAA--------------GAGACTATTCGGA----------CCTTTGCTTTC---------------GCTTCTT-TGCCGCT---------------------AGCACCTAAACTTTG-------ATTCACTAGCTGAAAGCATCATGATTTGACTATTCCACATCACAAGAT---
s cb4.chrX              9428790 333 + 21540570 -------------------TCCCATGTGACTATTCAGTATGCCaaacaaggaaaaag-aa-------agtgg-------tgcgcaaaaa--------aaaaaagagatgcgAGAGCACAACTTGATTAGTCTAATCAGAACATCGGTGAATCCAAGG-------------CACAGCCTGTGTTGCGTTTTCCTCA-------CGCCTGCAACtctttgattcaatttattGCCCTCCGAC---Ggacacaaaaaagga---------------------gaaaaaagaaaaaataagaagaagtaGCTGCCCTAAAAAACTTTCCGGA----------TCTTT--CTACGAAG----------ATCTTCTT-TGCCGCA---------------------AGCACCTAAGCTTTG-------ATTCACTAGCTTAAAGCACCATGATTCGACTATTCCGCAccatgaaat---
i cb4.chrX              I 218 I 270
s caeRem4.Crem_Contig0  1272667 344 -  4500979 -------------------TCCCATGTGACTATTCAGTATgccaaacaagaaaaaaa-aagcag---agTGGG-----CCGTGCGcgca--------aaaaaggagaagggaGAGCACAACTTGATTAGTCTAATCAGAACATCGGTGAATCCTCGG-----GAGCCTGTCGTAGCCGTTGTTGC-TTTTCCTCA-------CGCCTGCAACTCTTTGATTCAATTTATTGCCCTCCGAC---gg--acaaaaaatgg---------------------gaaaaaagaaagg--aaaaaaaagtagaggCT----AAAACTTTTCGGACGGATCTTTCCTTTT--CTAC--------------AGCTTCTT-TGCCGCT---------------------AGCACCTAAGCTTTG-------ATTCACTAGCTGAAAGCATCATGATTCGACTATTCCGCACCACAGAAT---
i caeRem4.Crem_Contig0  I 4 I 376
s caeSp111.Scaffold622    41206 342 +   386604 -------------------TCCCTTGTGACTATTCAGTATGccaaacaagaagaaaa-aagaggaagggCGGG-----CCATGTGCgc------------aaaaagaaggaagagcaCAACTTGATTAGTCTAATCAGAACATCGGTGAATTCTTGG-------CCGTGCCATCGC--------T-TTTCCCTCG-------CGCCTGCAACTCtttgattcaatttgttGCCCTCCGACAGagg--acaaaaaagaagacgatgctgtataagaaaatgcagaaaaaagaa--agaaaaaagtagaggct----aaaaCTTTTCGGA----------CCTTT---------------------GCTTATT-TGCCGCT---------------------AGCACCTAAGCTTTG-------ATTCACTAGCTGAAAGCATCATGATTCGACTATTCCGCGCCACAGAGT---
i caeSp111.Scaffold622  I 254 I 3
s caePb3.Scfld02_0      2562765 327 +  4147112 -------------------TCCCATGTGACTATTCAGTAtgccaaacaagaaaaaaagaggaagaaaagtggG-----CCATGTGCGc---------gaagaagagaagggagAGCACAACTTGATTAGTCTAATCAGAACATCGGTGAATCCTCGG-------TCCTGTCGTTGTCGTTGTTGC-CTTTCCTCG-------CGCCTGCAACTCTTTGATTCAATTTATTGCCCTCCGAc---gg--acaaaaaaga----------------------gaagaaaaaagaa----aaaaaaataggagcT----AAAACTTTTCGGA----------CCTTT---------------------GCTTATT-TGCCGCT---------------------AGCACCTAAGCTTTG-------ATTCACTAGCTGAAAGCATCATGATTCGACTATTCCGCAccgaagaat---
i caePb3.Scfld02_0      I 4 I 3
s caeJap4.Scaffold17084  256097 387 -   375229 tctagTCAAAGTCTGTCAGACACATGTGACTATTCAGTATGccaaacaagaaaaaag-taaAG----AGTGGGAG---TTGTGTGCGCGAAG-----AAGGGAGAAAAGAGAGAGCACAACTTGATTAGTCTAATCAGAACATAGGTGAATCCGCAA-----------GACGTTTCTGTCGTTGC-TGCTTCTCGGCTTGTCCGTCTGCAACTCTTTGATTCAATTTATTGCCCTCCGAC---Ggc-acaaaaaa------------------------gaagaaacagcAC-----------------CA----ACATTTGGACGGA----------CCTTT--TTTCGGTGTtgcttcttctgcttcttctgcttcttcgTTTTCATAGAAAAAGAAGAGTTAGTAAGCTTTGATTCTCTATTCCCTAACTAAAAGTATCATTATTCAACTATTCCGCACGACAGACAGAA
i caeJap4.Scaffold17084 C 0 C 0

a score=817.000000
s ce10.chrX             4315308 8 + 17718866 GTGGATTG
s caeSp111.Scaffold622    41551 8 +   386604 AGGAACGA
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2563095 8 +  4147112 aagaacgA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  256484 8 -   375229 ATGAATCG
i caeJap4.Scaffold17084 C 0 I 1567
e cb4.chrX              9429123 270 + 21540570 I
e caeRem4.Crem_Contig0  1273011 376 -  4500979 I

a score=2022.000000
s ce10.chrX             4315316 12 + 17718866 TTGTGTTTAGGT
s caeSp111.Scaffold622    41559 12 +   386604 TCTTGTTTTGAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2563103 12 +  4147112 TCGTGTTTTGAT
i caePb3.Scfld02_0      C 0 I 367
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9429123 270 + 21540570 I
e caeRem4.Crem_Contig0  1273011 376 -  4500979 I

a score=757.000000
s ce10.chrX             4315328 60 + 17718866 ---TTTGGTCCAGAAGTGT-----TTGATTTTTTAATAGAAACCCTT-GTA-TGTTTGATGTTTTCATTA
s caeSp111.Scaffold622    41571 70 +   386604 GTACTTGACTCAGGAATCTACTCCTTGATTCTATAGTTCAGATACTTcgtgttttttggttttttctcta
i caeSp111.Scaffold622  C 0 I 292
e caePb3.Scfld02_0      2563115 367 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9429123 270 + 21540570 I
e caeRem4.Crem_Contig0  1273011 376 -  4500979 I

a score=0.000000
s ce10.chrX             4315388 1110 + 17718866  
e caePb3.Scfld02_0      2563115  367 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9429123  270 + 21540570 I
e caeSp111.Scaffold622    41641  292 +   386604 I
e caeRem4.Crem_Contig0  1273011  376 -  4500979 I

a score=470.000000
s ce10.chrX             4316498 10 + 17718866 CGATTTTTCA
s cb4.chrX              9429393 10 + 21540570 CAAACTTTCA
i cb4.chrX              I 270 C 0
e caePb3.Scfld02_0      2563115 367 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e caeSp111.Scaffold622    41641 292 +   386604 I
e caeRem4.Crem_Contig0  1273011 376 -  4500979 I

a score=-44.000000
s ce10.chrX             4316508 8 + 17718866 TTCCCTCC-
s cb4.chrX              9429403 9 + 21540570 TTCTCATTG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2563482 8 +  4147112 ttcttttt-
i caePb3.Scfld02_0      I 367 C 0
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e caeSp111.Scaffold622    41641 292 +   386604 I
e caeRem4.Crem_Contig0  1273011 376 -  4500979 I

a score=-1622.000000
s ce10.chrX             4316516 8 + 17718866 --TTCGCATC-
s cb4.chrX              9429412 9 + 21540570 --TTCACAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1273387 8 -  4500979 --TTCAC-TTT
i caeRem4.Crem_Contig0  I 376 C 0
s caePb3.Scfld02_0      2563490 7 +  4147112 ttctcat----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e caeSp111.Scaffold622    41641 292 +   386604 I

a score=71628.000000
s ce10.chrX             4316524 825 + 17718866  
s cb4.chrX              9429421 735 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1273395 784 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    41933 776 +   386604  
i caeSp111.Scaffold622  I 292 C 0
s caePb3.Scfld02_0      2563497 806 +  4147112  
i caePb3.Scfld02_0      C 0 I 449
e caeJap4.Scaffold17084  256492 1567 -   375229 I

a score=546.000000
s ce10.chrX             4317349 1 + 17718866 T
s cb4.chrX              9430156 1 + 21540570 t
i cb4.chrX              C 0 I 902
s caeRem4.Crem_Contig0  1274179 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    42709 1 +   386604 t
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2564303 449 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I

a score=584.000000
s ce10.chrX             4317350 3 + 17718866 CTT
s caeRem4.Crem_Contig0  1274183 3 -  4500979 ctt
i caeRem4.Crem_Contig0  I 3 I 285
s caeSp111.Scaffold622    42710 3 +   386604 ttt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2564303 449 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157 902 + 21540570 I

a score=479.000000
s ce10.chrX             4317353 10 + 17718866 TCTGATACTT
s caeSp111.Scaffold622    42713 10 +   386604 ctggataCTT
i caeSp111.Scaffold622  C 0 I 235
e caePb3.Scfld02_0      2564303 449 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157 902 + 21540570 I
e caeRem4.Crem_Contig0  1274186 285 -  4500979 I

a score=0.000000
s ce10.chrX             4317363 1023 + 17718866  
e caePb3.Scfld02_0      2564303  449 +  4147112 I
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157  902 + 21540570 I
e caeSp111.Scaffold622    42723  235 +   386604 I
e caeRem4.Crem_Contig0  1274186  285 -  4500979 I

a score=1603.000000
s ce10.chrX             4318386 84 + 17718866 TTATAATAAAACCTACTCTCTTGTTTCAATGTGGCATCTGAATAACAACAATCCGCATCG--CTCAAAT-ATTCAATAATTCACGCC
s caePb3.Scfld02_0      2564752 87 +  4147112 tttttatGTAACTTACTCTCCTTGTTTTGTTTGACTCTTGCATAATAACGTCTCTCTTTTGTCCCAAGTCGTTCACAATTTCACGCC
i caePb3.Scfld02_0      I 449 C 0
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157 902 + 21540570 I
e caeSp111.Scaffold622    42723 235 +   386604 I
e caeRem4.Crem_Contig0  1274186 285 -  4500979 I

a score=804.000000
s ce10.chrX             4318470 61 + 17718866 --ATAGCAATTGTATCTATCCACCTGTCAG----GCGTCTGGCAC------ATGAAGCTGGTGTCTCCATTAA---
s caeSp111.Scaffold622    42958 55 +   386604 --ACAGAAATTGTATCTGTCCACCT---------CCACCTAGCTCCGC---AAACAGCGG-------AATAAAGAT
i caeSp111.Scaffold622  I 235 C 0
s caePb3.Scfld02_0      2564839 69 +  4147112 ATATAGCAATTGTATCTCTCCACCTGCCCCTGCACCACCTTATACTGCCTGGTAGAACAA-------TATAGATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157 902 + 21540570 I
e caeRem4.Crem_Contig0  1274186 285 -  4500979 I

a score=6045.000000
s ce10.chrX             4318531 76 + 17718866 TCGCGTCATTTTCTGTGGATTCTTG-TTAAACTGATCTAC---TGAATTTCATGGCTTGGACCGGTCAAATCGATGAGGC
s caeRem4.Crem_Contig0  1274471 66 -  4500979 TCACGTCA--TTCTCCCAGGACTCACCTGAGAATTTCGTC------------ATATTATGATAGGTCGAATCGAGGAATC
i caeRem4.Crem_Contig0  I 285 I 8
s caeSp111.Scaffold622    43013 78 +   386604 TCACGTCACTATGTTGGAAATCTTACCTGAACTGATTGTCACATGAGACT--ATATTTTGATGGGTCAGATCAATGCATC
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2564908 76 +  4147112 TCACGTCACCTTATTCAAGATTTTACCTAGAATAGTAGTCACATGAGA----GTGTTCAAATAGGTCAAGTCAATGAATC
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17084  256492 1567 -   375229 I
e cb4.chrX              9430157 902 + 21540570 I

a score=7580.000000
s ce10.chrX             4318607 17 + 17718866 TCAATTGGAGTAGCATG
s cb4.chrX              9431059 17 + 21540570 TCAATTGGTCCTGCATG
i cb4.chrX              I 902 C 0
s caeRem4.Crem_Contig0  1274545 17 -  4500979 TCAATATGCTCTGCATG
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold622    43099 16 +   386604 TCAATTGGTT-TGCATG
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0      2564992 16 +  4147112 TCAATTGGTT-TGCATG
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084  256492 1567 -   375229 I

a score=75747.000000
s ce10.chrX             4318624 173 + 17718866 ACGTACAAGC----------------TGACTGACCAGAAACAATAG-TGCTCG--GAAGACAAAAGCTACATGAATTTCTTATGCTCCTCTCTCTCTCACTCATTTTTCTCACTTTCACCTTTG-GAAAAACTTCC----AAAGCT--------AGATTCACGACCAGATTTCAAAGAACTTTAAAGTTTC--ATTTTGTTTCATGG--
s cb4.chrX              9431076 170 + 21540570 ACGCACATgc---aaggaaaaaaaaccgacTGACCACAAACAATAG-TGCGAAATGAAGACAAAAGCTACATGAATTTATGATTGTCCTCTCTCACT----------------------CCTGG-AAAAAGTTTCTACAAAAAGTCGTCCCCAAAGATTTTAGACCAGATTTCAAAGAACTTC---GTGTC---TTTTGTGAC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1274562 159 -  4500979 ACGTACATAC---AAAG---------TGGCTGACCAGAAACAATAG-TGCGCA---AAGACAAAAGCTACATGAATTTCTGATGGTTCTCTCTCACT--TTCA---------CTCGAAGCCTGG-AAAACTTTC------AAAGCC--------AGATTTTAGACCAGATTTCAAAGAACTTT---GTGTC---TTTCCTGTCGTTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43115 165 +   386604 ACGTACATGC---AAAGG--------CTACTGACCAGAAACAATAGTTGCGCA---AAGACAAAAGCTACATGAATTTCTGATGCTCCTCTCTCACT--TTCA--------CCCTTTAGCCTGGAAAGAAGTTTCC----AAAGAA--------AGATTCTAGACCAGATTTCAAAGAACTTT---GTGTC---CATTCTTGCGttt--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565008 164 +  4147112 ACGTACATGCAAGAAAGT--------CGACTGACCAGAAACAATAGTTGCGAA---AAGACAAAAGCTACATGAATTTCTGATGCTCCTCTCTCACT--TTCA--------ACTCTCAGCCTGG-AAGAAGC----------GGAC--------AGATTCTAGACCAGATTTCAAAGAACTTT---Gtgtcttttatttttgcattt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  258059 150 -   375229 ACGTACAAAC----------------CAACAGACTAGAAACAATAG-AACGTA---AAGGCAAAAGATTCATGAATTTCCAACAAACCAAACTCGGC----------------------CTCGG-aagaaatttca----aaagaa------gAATATTTGACACCAACTTTCAAAGAgcttt---ctgct---tttttttgttcttgg
i caeJap4.Scaffold17084 I 1567 I 77

a score=-6625.000000
s ce10.chrX             4318797 128 + 17718866 AATTAGATATTTCTGTA----AAATATTATATATTCTT------AAAAATGTTATTAGCAGAAAAAAAT-------TGTCTGAAACTCAACGAAACA--CT---TTGCAAGTACATCAGCTT--------TC-----ATAGGAGCATG----CGTTGGAACTAAAAC
s cb4.chrX              9431246 101 + 21540570 -TT--GTACCACTGCTG----GAGTTCCCAATTTCCAG------AGAAATTT------CAG---------------TCTGGGAACCTCAACTAAACA--CT----TGCAGA--------------------------AAGGAAATTTTCGATCGAAAAAGCTTTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1274721 139 -  4500979 TTT--GTGCTCCGTGAT----GCGTCTCcaatttccag------aatatttc------cagaa-atgaTGTCTAGCTGTGGGAATTTCAACGAAACA--CTCTTCTGCAAGTACACCATCTT-----ACATCTGCCCAACGACACTTC--ATCATCACAATTTCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43280 126 +   386604 ttttCGTGCTTTATGCA----GTATCTCGAATTTCGGG------AAGAGTTC------CAGAATAATGTCTATGA----GAAAAAGCCAACGAAACA--CT---TTGCAAGTACATCGTCTTCACCAGTATC-----AGCAGAgctcttcatcat-----------c
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565172 140 +  4147112 ct---gtGTTTTATGCAGAGCGCATCTCCAATTTCTGGAAggaaaagaattt------cagaataatatgTTCAACAGTGAGAAACTCAACGAAACACGCT---TTGCAAGTACACCGTCTT-----ACATC-----AACGTTGAGGTTCATCATAGGAA-----AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  258209  77 -   375229 I

a score=247524.000000
s ce10.chrX             4318925 562 + 17718866  
s cb4.chrX              9431347 552 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1274860 523 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43406 521 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565312 529 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  258286 538 -   375229  
i caeJap4.Scaffold17084 I 77 I 42

a score=-10377.000000
s ce10.chrX             4319487 43 + 17718866 CTCATCGTACCGAA-TATTCTTTTCCCCCGAAACCACTAGGTCC
s cb4.chrX              9431899  1 + 21540570 T-------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1275383 24 -  4500979 CTTCATGTACCGGC-TAGCCTACCA-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43927 25 +   386604 CTATTTGTACCACCAAATTCTACTC-------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565841 17 +  4147112 CTCTT------AC--AATCCTACCC-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  258824 42 -   375229 I

a score=5867.000000
s ce10.chrX             4319530 49 + 17718866 CTAAGCCACTCTTC--------------CAATCC-TATTTTG--GGGAGGAAGAGTAGAGCGTGCA----
s cb4.chrX              9431900 41 + 21540570 ----ACCACTTTAC--------------CAATCC-CATCTTG--AGTGGCTCG----CATCTTCGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1275407 49 -  4500979 --AAACCACTCTAC--------------CAATCCTTGTCTTGAAAGAAGCTTG-Tttcattttgca----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43952 43 +   386604 --AACCCACTTCTT--------------CAATCC-TATTTCT--GAAGACAGG----AAGCGTGTA----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565858 44 +  4147112 -GAAACCACTCTTC--------------CAATCC-TGTTTTG--AAAAGCAGG----AAGCGTGCA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  258866 63 -   375229 CAAAGCCACTTTTCACGATTCCTTGCAAAAATCC-TATTTTG--GGTAGAAGA----AGAATAGCAGAAA
i caeJap4.Scaffold17084 I 42 I 26

a score=-3081.000000
s ce10.chrX             4319579 18 + 17718866 TTTTCTTTTTATTTGCAA
s cb4.chrX              9431941 11 + 21540570 CTTACTTCCAa-------
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig0  1275456  9 -  4500979 ttttctccT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    43995 12 +   386604 TTTTCTTGC------TTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565902 16 +  4147112 TTTTCTGTCAT--CGTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  258929 26 -   375229 I

a score=-2957.000000
s ce10.chrX             4319597 22 + 17718866 CAAC-----TGCCTCTTGTTCTATTCG
s caeRem4.Crem_Contig0  1275465 19 -  4500979 CCGC-----CATCCCTAATTC---CAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    44007 20 +   386604 CAACT----CTGCTCTCGTCT---CCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2565918 20 +  4147112 CAACTGGTCCATCTTTTGTC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  258929 26 -   375229 I
e cb4.chrX              9431952 41 + 21540570 I

a score=2828.000000
s ce10.chrX             4319619 12 + 17718866 CAAAAATTTGCT
s caeRem4.Crem_Contig0  1275484 12 -  4500979 AATTCATTCGAC
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    44027 12 +   386604 TTTTAATTTGCT
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2565938 11 +  4147112 -CTAAATTTGCT
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  258955 12 -   375229 CCACAATTTGCT
i caeJap4.Scaffold17084 I 26 C 0
e cb4.chrX              9431952 41 + 21540570 I

a score=125547.000000
s ce10.chrX             4319631 617 + 17718866  
s cb4.chrX              9431993 632 + 21540570  
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig0  1275499 548 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    44042 570 +   386604  
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2565953 580 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  258967 525 -   375229  
i caeJap4.Scaffold17084 C 0 I 72

a score=-22268.000000
s ce10.chrX             4320248 85 + 17718866 GTGTTATTGTTATTATCAAATTTATCAAATGAGAACTTTTTCATCAGCTCAAGAACTTCATATTACGCTCAACC-------------------------------TACAAAAATAG
s cb4.chrX              9432625 82 + 21540570 GAATC------------------------TGAGCATATcccc----gttt---ttttttactaGGTGGTCTGTTGATTAGtattccatctgaaaatgaagcaagattctgaaa---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1276047 52 -  4500979 GAATCA--------------------GTGTAGGCGcatct-------ttc---tctctcattttgttgtttttt-------------------------------ttcgtaaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    44612 44 +   386604 ATATCA--------------------CAGTTGGAAC------------------ATCCCcctttgttatttttt-------------------------------tgcataGC---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2566533 44 +  4147112 gagaaa--------------------aaatcagagc------------------acatcttcttgttttgtttt-------------------------------ctgtggGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  259492 72 -   375229 I

a score=-15290.000000
s ce10.chrX             4320333 48 + 17718866 GGATTACCTTTGATTTTTCCCATGAACTTTCGTATTG---GAAAAATTCTG--
s cb4.chrX              9432707 22 + 21540570 --attagga------------------------agTG---GGAGAATTTTA--
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig0  1276099  8 -  4500979 ----------------------------------------gGTGTATT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    44656 28 +   386604 --ATGACCATTG---------------------ATTACTCGTCTTATTTTC--
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2566577 25 +  4147112 --ACCACCATTG---------------------ATTA---GTATTCTGTCC--
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17084  259564 30 -   375229 GGTTCATCTTTGG--------------------ATGT---GCCTAATTTTTGT
i caeJap4.Scaffold17084 I 72 C 0

a score=-34503.000000
s ce10.chrX             4320381 143 + 17718866 TGGAAAATTGGTTTGAGAAACTCTTTAGCTTT----------TTTGAAATTTTGA-------AATACAAAATAGTGATTTTTCCCACTACATAATGGTTTTGAGATTTTGCTTAAAATAGCTCTGAAAAAACACATTTTCATTGA----------------AAGACTTTTCAAAAA
s caeRem4.Crem_Contig0  1276107  86 -  4500979 -----------------------ATTA---------------GTTAGTGCTTTGctggat------aaaaatgaaaa----ctttaaagAAC-------------GGTTGTGAATTCTAATGA----------------CATCAATTTT------------AGGTTTCGTGAATA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    44687 117 +   386604 ------------TAGAAAACATTATCATGTCTtaaa------tttggattttcgcGTGAT--TATACAAAATAAAAC----TCTCATTGCAT-------------TTTTGTTAAAATCAATGTTG-----AGATATTCCCATCAAGTGC------------AAGAGTTATG-----
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2566619 136 +  4147112 ------------TTGAGAATAACTGTATCTCCTGACATCATTCTTCGAACTCTACGTGATAAGATTCAAAATAATA-----TCTGAAAcca------------------attaaaaataataatc-----tcAGTTTCCCATGAACTATTCAGTAGAGGAATAGAATTATGAAGAA
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17084  259594  74 -   375229 -------TCGGTTAAACAatgttt------------------tttggctttttgtg------CAGACCAtataata-----tttgaaaaaatatac---------gtATATCAGACAAA---------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9432729 103 + 21540570 I

a score=-31304.000000
s ce10.chrX             4320524 80 + 17718866 ATTGTTAACAATTTATTTTGCCTGTTCAAAGTTTCAAAGAAAAAGGAACCAATCAAAT-TTCGGTCCAAACTTTTTTTCTT
s cb4.chrX              9432832 55 + 21540570 atttttaaccATTCTCTTCTATCCATGACAAT-----------------TAATCATctacgt---------tttttttgtt
i cb4.chrX              I 103 I 51
s caeRem4.Crem_Contig0  1276193 33 -  4500979 ------AGC--------TCAATTCAAAAGAAT------------GCA--CAGCCATCT-CAT-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    44804 45 +   386604 ------AAT--------TATCCTTTAGAATGT------------GATATTTGCAGTTT-CATG----AGAGTTCTA-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2566755 52 +  4147112 -AGAATAAT--------TCATCTCTAGAAAGTTC----------GAAGTAAACTGTGT-CATG----AGAATTTTA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  259668 56 -   375229 ------------TTGCCtactaatttgaaaaa------------aaaagaagtcaaAA-Cctttgacatattttttcttct
i caeJap4.Scaffold17084 C 0 C 0

a score=-3790.000000
s ce10.chrX             4320604 42 + 17718866 GCCAAAGTT-TAGCCCAACATTTGAGCACAGTTAA----AATTCTCC
s caeRem4.Crem_Contig0  1276226 41 -  4500979 AATAGAGTATTCCCATGACATT----CCTAGTTAT--AAAATATTCC
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold622    44849 28 +   386604 ----------TGACATCAAGtt----cattattt-----tattttct
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2566807 29 +  4147112 ----------TGACATCAAGTt----cattatttc----tattttcc
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  259724 23 -   375229 --------------------gt----ctttgtttttgaaaatattcc
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9432887 51 + 21540570 I

a score=-4693.000000
s ce10.chrX             4320646 43 + 17718866 -----------TGTCAAACATTGGCATGAAGCTAGGGATAAATCCTGAGAGACG
s caeSp111.Scaffold622    44879 22 +   386604 -----------tgttctaT---------------------CAACTTGTCTGATT
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2566838 22 +  4147112 -----------cgttttgc---------------------aatttcaatgaatt
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  259747 31 -   375229 tttttctttttcattttgc-----------------------ttcCAATACACC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9432887 51 + 21540570 I
e caeRem4.Crem_Contig0  1276267 51 -  4500979 I

a score=-21074.000000
s ce10.chrX             4320689 69 + 17718866 ----TCCAATTTTTTCTAATAATGGAAAAAGTGATTTTCCGTT-----------TGACAAATTGAAAAACTGAA-------------GAGCTTATTT
s cb4.chrX              9432938 51 + 21540570 ----TTACCTTCTCACTATGTATTCAAAATGCAGCTCTCAGTTTTGCAAGCAT-TT-----------------------------------------
i cb4.chrX              I 51 C 0
s caeSp111.Scaffold622    44901 73 +   386604 ----cttta------------aatcaaaaactagGAA-------TGTGAACATAttatcaatttaaaaaatgaagagaaatctCTTTGAGTTAATT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2566860 87 +  4147112 ----ttccattctcatGA-GTATTCACTAACTAGTTA-AGGTTTGGTCAGTAT-TTACAACTTCAAATAATG--TGCAACTCCACTGAAATTTATT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  259778 66 -   375229 GCTACTTCCTTCTcac-----attttaaaatt------caatttttctcgcctatcaaaaattcacatGCTCTATGT--------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1276267 51 -  4500979 I

a score=158133.000000
s ce10.chrX             4320758 266 + 17718866 ATGTCATTTTTTTTTAATTCGGAAGGACAATAAAAACTTTGA--TAATTCATCAAAATTCAC----TGCTTCCAGGCTTT---AAACTGATGAACGAATCGGAAATCGCGGCCGCGGTGGCGGCGATGGA-GTTGGAG--------------------GACGAACTGCTCCAGCCTGAATGGGCATATCTGGTACTTTCCATTGTTCCTCTCGTCTGCATCTTGGGTAATCTTATGGTTGTGGCTGCTGTTTGGACAACCAAAAGCCTGCAAACACCTACGAATCACTTATTGGCA
s cb4.chrX              9432989 219 + 21540570 -----------------------------------------A--TAAACTTCTTAAATTCTC----------TAGACCCC---TCACTGATGAACGAATCGGAAATCGAGGCTGCAGTGGCGGCCATGGA-GCTGGAG--------------------GACCAACTTCTCCAGCCCGAATGGTCCTACCTAGTACTTTCCATCGTTCCGCTCGTCTGTATCTTGGGTAATCTGATGGTAGTGGCAGCTGTATGGACCACCAAAAGTTTACAAACTCCAACGAACCATCTTTTGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1276318 240 -  4500979 --GTATCACTCTTTCAT------------------ACTTTCG--AAAGCCTGTCTGATATTC----------CAGGCCTT---GAACTGATGAACGAATCGGAAATCGAGGCTGCGGTGGCAGCCATGGA-GCTGGAG--------------------GACCAACTGCTCCAACCCGAATGGTCTTATCTGGTTCTTTCCGTCGTTCCTCTTGTCTGCATCTTGGGTAATCTTATGGTAGTGGCTGCTGTTTGGACAACCAGAAGTTTACAGACCCCGACAAATCATCTTTTGGTA
i caeRem4.Crem_Contig0  I 51 I 40
s caeSp111.Scaffold622    44974 270 +   386604 CTTTTGTGCACTTTTCGTTAAG-----------ATATGATCA--TTAtcaaatctaattttt-------tatcagcCTGC---GAAGAGATGAACGAATCGGGGAT---GATCGATATGGAATCCATGGatgataaaatcaaaaatatggaGATGTTTGACAAACTTCTCCAGCCCGAATGGTCATATCTCGTACTTTCGGTTGTTCCTCTCATCTGCATCTTGGGTAATCTTATGGTTGTGGCTGCTGTTTGGACGACTAGAAGTTTACAGACTCCAACAAACCATCTCTTGGTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2566947 252 +  4147112 CTGTCTTacgtttttta------------------gtttttg--tggttGACCCTAAACTTGAGTACGATTTCAGGCTTT---AAACTGATGAACGAATCGGAAATTGCGGCTGCGGTGGCAGCCATTGA-GCTAGAA--------------------GACCAAATGCTCCAGCccgaatggtcctatctcattCTTTCCATCGTTCCTCTTGTCTGCATCTTGGGTAATCTTATGGTAGTGGCAGCTGTTTGGACAACCAGAAGCTTACAGACTCCAACAAATCATCTACTGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  259844 244 -   375229 ---------ATTTTTAG------------------ATCTTCattttattcttcttcttcttc----atcaaCCAGGTTTTGAAGAACTGATGAACGAAACAGAAATTGAGGCTGCGATGGCAGCCATAGA-ATTGGAG--------------------GACCAGCTGCTTCGGCCCGAATGGTTCTATCTCATTCTTTCAATTGTTCCGCTCGTTTGCATTCTCGGTAATCTTATGGTTGTCGCTGCTGTGTGGACTACAAAAAGTTTGCAAACGCCAACAAATCACCTTCTGGTC
i caeJap4.Scaffold17084 C 0 C 0

a score=-13693.000000
s ce10.chrX             4321024 39 + 17718866 CGT--GAACATCT--------------TAAGCC----TTTTACAATTTATTCAGTTTTT
s cb4.chrX              9433208 36 + 21540570 GGTCTAGGGTTTT--------------TGAGGt----gttctcga--aattcgatt---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    45244 37 +   386604 -----AGAAATAT--------------TCTGATTCTCGTTGAAAA--CCTTCAGCTTT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2567199 41 +  4147112 -----AGAAACATAA----------AGTATcgtttcagtttccaa--aatcccatttt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  260088 40 -   375229 -------------AGTCAGTCCGTCAGTATGATAAAAGTTTTCAG--TATTGAGT----
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1276558 40 -  4500979 I

a score=452758.000000
s ce10.chrX             4321063 580 + 17718866  
s cb4.chrX              9433244 578 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1276598 577 -  4500979  
i caeRem4.Crem_Contig0  I 40 I 26
s caeSp111.Scaffold622    45281 571 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2567240 574 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  260128 629 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-12640.000000
s ce10.chrX             4321643 27 + 17718866 GGA----------CTTTTTTC----AAATA--AATTTAA----AAGG
s cb4.chrX              9433822 16 + 21540570 ----------------TATTC-----------AATTTATAGAT----
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold622    45852 26 +   386604 -AA----------CTCTGTTcaataaaaca--attcaat--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2567814 27 +  4147112 -AAATAACGATTTCCATGTTT-----------ATTCCAT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  260757 25 -   375229 ----------TTATTTTAGTC----AAATATTGTACAAA--------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1277175 26 -  4500979 I

a score=243444.000000
s ce10.chrX             4321670 517 + 17718866  
s cb4.chrX              9433849 491 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0  1277201 521 -  4500979  
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold622    45878 493 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2567841 501 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  260782 507 -   375229  
i caeJap4.Scaffold17084 C 0 I 1460

a score=14066.000000
s ce10.chrX             4322187 29 + 17718866 TCGTCTAAAACGGATATTAAATGAGTCAT
s cb4.chrX              9434340 29 + 21540570 TTTCCGAAAACGGATACAAAATGAGTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1277722 29 -  4500979 TTTTCTAAAACGGATACAAACTGAGTCAT
i caeRem4.Crem_Contig0  C 0 I 136
s caeSp111.Scaffold622    46371 27 +   386604 g--tttgaaatagaaacgaaatgaatCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2568342 29 +  4147112 GCTTCTAAAACGGATACAAAATGAGTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  261289 1460 -   375229 I

a score=-1428.000000
s ce10.chrX             4322216 14 + 17718866 TGGTAGACAATAGA-----
s cb4.chrX              9434369 13 + 21540570 ------CTATGGAAATGGa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    46398  8 +   386604 ------ATAATAGA-----
i caeSp111.Scaffold622  C 0 I 47
s caePb3.Scfld02_0      2568371  8 +  4147112 ------CTATTGAA-----
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=940.000000
s ce10.chrX             4322230 15 + 17718866 --AAATTGGTGTTTTTT
s cb4.chrX              9434382 17 + 21540570 ggtttttggagtttttt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2568385 15 +  4147112 --GTgtgagaattttct
i caePb3.Scfld02_0      I 6 I 70
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e caeSp111.Scaffold622    46406 47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=91.000000
s ce10.chrX             4322245 1 + 17718866 T
s cb4.chrX              9434399 1 + 21540570 t
i cb4.chrX              C 0 I 49
e caePb3.Scfld02_0      2568400 70 +  4147112 I
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e caeSp111.Scaffold622    46406 47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=0.000000
s ce10.chrX             4322246 530 + 17718866  
e caePb3.Scfld02_0      2568400  70 +  4147112 I
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e cb4.chrX              9434400  49 + 21540570 I
e caeSp111.Scaffold622    46406  47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=841.000000
s ce10.chrX             4322776 101 + 17718866 TTCTTAATTTTG---ACAGTACAGTTTAGGGAGGGAGGGACACAAGATTTACAACAACTTG------GTCATTTCCAAACTTTTCAATAGAGTCGTGTGTTATACGTTCT
s caePb3.Scfld02_0      2568470 102 +  4147112 TTTCTATTTTCGGATATAAAACGATGTAGAAAGAACAGAATATAAGGTTGATAA-AACTTGCTTTGAATCATTTTACAAATTCT-------GTATTTTGATGCATGTTTG
i caePb3.Scfld02_0      I 70 C 0
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e cb4.chrX              9434400  49 + 21540570 I
e caeSp111.Scaffold622    46406  47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=36.000000
s ce10.chrX             4322877 5 + 17718866 AAAAT
s cb4.chrX              9434449 3 + 21540570 --AAC
i cb4.chrX              I 49 C 0
s caePb3.Scfld02_0      2568572 3 +  4147112 --ATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  261289 1460 -   375229 I
e caeSp111.Scaffold622    46406 47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=546.000000
s ce10.chrX             4322882 1 + 17718866 A
s cb4.chrX              9434452 1 + 21540570 A
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0      2568575 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  262749 1 -   375229 a
i caeJap4.Scaffold17084 I 1460 C 0
e caeSp111.Scaffold622    46406 47 +   386604 I
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=-1598.000000
s ce10.chrX             4322883 10 + 17718866 ATCCTATTTC
s cb4.chrX              9434455 10 + 21540570 ataacaattt
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    46453  9 +   386604 ATATT-GTAC
i caeSp111.Scaffold622  I 47 I 1
s caePb3.Scfld02_0      2568581 10 +  4147112 TTATGAATGT
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold17084  262750 10 -   375229 gttttatttt
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1277751 136 -  4500979 I

a score=75824.000000
s ce10.chrX             4322893 73 + 17718866 TTAAGCTGCAAACCATCCTTGAAGCAGTTCATCCATCCTCTTCAGGAAGTCAGGAAAACACGACGATCGAGGT
s cb4.chrX              9434465 72 + 21540570 ttcagctgcaAACAATTCTTGAAGCAGTTCACCCATCCTCATCCGGAAGTCAAGAAAATACAACAATCGAGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1277887 73 -  4500979 ttcagcttcaaacAATCCTCGAAGCAGTTCATCCTTCCTCTTCAGGAAGTCAAGAGAACACAACAATTGAGGT
i caeRem4.Crem_Contig0  I 136 C 0
s caeSp111.Scaffold622    46463 73 +   386604 TTCAGCTTCAAACAATTCTCGAAGCAGTTCACCCATCCTCATCAGGAAGTCAAGAAAACACAACCATTGAGGT
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2568592 73 +  4147112 TTCAGCTCCAAACAATCCTTGAAGCAGTTCACCCGTCATCCTCAGGAAGTCAGGAAAACACTACAATTGAGGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  262760 71 -   375229 --tagcTCCAAACGATCCTCGAAGCAGTCCACCCGTCTTCTTCAGGCAGTCAGGAGAACACAACAATCGAAGT
i caeJap4.Scaffold17084 C 0 I 45

a score=2700.000000
s ce10.chrX             4322966 55 + 17718866 AGT--GTCTTACTTCTCAAGTTTTCTCT--TCCCCTTCCTATTGTCAAGTATT--TCCCCC
s cb4.chrX              9434537 40 + 21540570 -----TTTGTGCTCTTCAAGTGTGCTCT--C-------------ATACATGCTCGTCTCC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1277960 41 -  4500979 AGT--TCCTTGCTCGTTAAGTTTGCGCT--C-------------TCAAgtgtt--ttgtc-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    46536 43 +   386604 AGTT-CTTGTGCAGCTCATGTTCTCTCTCCT-------------ACAAGTGTT--TTCC--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2568665 43 +  4147112 AGTTCCTTTTGCTCCTCGACTTTGCTCT--T-------------ACAAgtgtt--tttca-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  262831 45 -   375229 I

a score=366125.000000
s ce10.chrX             4323021 404 + 17718866 TATTTTTGCAGGAAGACCCTGACCGACCTCCTTCTGTTCTGCTAGAGGCGGTCACTTTAAAATGCGAGATCGACACCAGCGGACCCATTCTTGAACTGCCACGCCCTACGTACACAAAAAAGTGAGGACaagaaaagaaaaaaaaagaa----gaagaaaaaa---gaaTTAC-AAACG-AGA-------TCTTGCAGCATGTCGCGGCGATTCTCCGATGCGGTCAATTCAATTTCGAGTCGCGGTAGAATGAAGTCGGTGTCTTTTGGAA---CT---TCACGAAAACGGCGACATTCACATCAGCCACAGGGAAATCGGGAAGTCGTGACGTCCGAAGAGTCCAAGAAATTGCACTCTTTGAAGCCGCCACTGGTTAGT--TGCG-AGGGT-TA--AAAAG----AGAA--AAATCTT------------TGCAAAGCCACAAGAAA--
s cb4.chrX              9434577 407 + 21540570 -TTTTTTGCAGGAAGACCCGGACCGACCACCCTCTGTTCTTTTGGAAGCTGTGACTTTAAAATGCGAGATCGACACCAGCGGGCCCATCCTTGAACTGCCACGCCCAACCTACACGAAAAAGT--------GAGCgatgaagaaaaga-----gaagaaaaaatgggaattacAAAACG-AGATCCTTCTTCTTGCAGCATGTCGCGTCGATTCTCTGATGCGGTCAATTCAATTTCGAGTCGCGGTAGAATGAAGTCAGTGTCGTTTGGAACTGCTGCATCGCGACGACGTCGACATTCACATCAGCCAGTAGGAAATCGGGAAGTCGTCACGTCCGAAGAGTCCAAAAAGTTGCACTCGCTAAAGCCACCATTGGTTAGT--CACA-GGggt-ca--aatga----aaaa--agtgaat----------------aagggaaaaagaa--
i cb4.chrX              C 0 I 190
s caeRem4.Crem_Contig0  1278001 408 -  4500979 -atttttgcaGGAAGACCCCGACCGACCTCCTTCTGTCCTGCTTGAGGCGGTCACTTTAAAATGCGAGATCGACACCAGCGGGCCCATCCTTGAACTACCACGTCCAACATacacaaaaaagt--------gagaaaagaagaagaagagcctggcgaaaaaa---gaaTTAC-AAACG-AGA-------TCTTGCAGCATGTCGCGCCGATTCTCTGATGCGGTCAATTCAATTTCGAGTCGCGGTAGAATGAAGTCGGTGTCTTTTGGAA---CTGCATCAAGAAAACGACGGCATTCACATCAGCCACAGGGAAATCGGGAAGTCGTCACGTCCGAAGAGTCCAAAAAGTTGCACTCTCTGAAGCCACCGTTGGTTAGTCACACA-GGGgt-ca--aaaaacgacaaaa--aatgcGT------------CTTCAAAAGTCacaaaa--
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    46579 401 +   386604 -CATTTTGCAGGAGGACCCTGACCGACCCCCTTCTGTTTTGCTTGAAGCGGTCACTTTAAAATGCGAGATCGACACCAGCGGACCCATTCTTGAACTGCCACGCCCGACATACACAAAGAAGt--------tagcaagaaaaaaaggga----gaagaaCAAA---GAATTAC-AAACGAAAA-------TCTTGCAGCATGTCGCGGCGATTTTCTGATGCGgtcaattcaatttcgagTCGCGGTAGAATGAAATCGGTGTCTTTTGGAA---CTGCCTCACGGAAAAGACGGCATTCACATCAGCCACAAGGAAATCGGGAAGTCGTCACGTCCGAAGAGTCCAAAAAATTGCACTCTTTGAAGCCACCATTGGTTAGT--CACACAGggt-ca--aagaa----aagaa-aaaacgt------------cttcaaaagtcacaaag--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2568708 406 +  4147112 -cattttgcagGAAGACCCTGACCGACCCCCTTCTGTTCTGCTAGAGGCAGTCACTTTAAAATGCGAGATCGACACCAGCGGGCCCATCCTTGAACTGCCACGCCCGACctatacaaaaaagtgagaagaataGCAACAAAAAACGG--------AGGAGAAA---GAATTAC-AAACG-AGA-------TCTTGCAGCATGTCCCGCCGATTCTCTGATGCggtcaattcaatttcaagccGCGGTAGGATGAAATCGGTTTCTTTTGGAA---CTGCCTCACGGAAAAGACGGCATTCACATCAGCCACAGGGAAATCGGGAAGTCGTCACGTCCGAAGAGTCCAAAAAATTGCACTCTTTGAAGCCACCGTTGGTTAGT--CACA-AGggt-caagaagaa----aagaagaaagtgt------------cttcaaaagtcaaaaac--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  262876 407 -   375229 TATGCTCGCAGGAGGACCCCGACCGACCACCTTCCGTCTTGCTCGAAGCAGTCACTTTAAAATGCGAGATCGACACCAGTGGGCCCATTCTTGAGCTTCCGCGGCCGACATACACAAAAAAGT--------GTGGAGGAAAA-----------GGGGGTCAAA---GAGtttg-aaacg-aaa-------ttttgCAGCATGTCGCGCAGATTCTCTGATGCAGTCAATTCGATTTCGAATCGCGGTAGAATGAAGTCGGTGTCCTTTGGAA---CTGCTTCGCGGAAGAGACGACACTCACATCAGCCGCAGGGAAATCGGGAAGTCGTCACGTCCGAAGAGTCCAAAAAGTTGCACTCGTTGAAGCCTCCGCTGGTTAGT--TTGG-GCAAtata--aaaaa----gaga--aaaaagtgaGGGGGCTCTCCTTCAAAAACCGTtacaca
i caeJap4.Scaffold17084 I 45 C 0

a score=-1556.000000
s ce10.chrX             4323425 10 + 17718866 TTTCCGAACA---
s caeRem4.Crem_Contig0  1278414 10 -  4500979 tttttccaCG---
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    46980 10 +   386604 tttcttggcg---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2569114 10 +  4147112 ttttctgcca---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  263283 10 -   375229 ---attaaaaaaa
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9434984 190 + 21540570 I

a score=-288.000000
s ce10.chrX             4323435  4 + 17718866 AAAA------
s caeRem4.Crem_Contig0  1278424 10 -  4500979 AGAACCAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    46990  4 +   386604 aaag------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2569124  4 +  4147112 aaaa------
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold17084  263293  0 -   375229 C
e cb4.chrX              9434984 190 + 21540570 I

a score=-666.000000
s ce10.chrX             4323439 5 + 17718866 CCATG--
s caeRem4.Crem_Contig0  1278434 5 -  4500979 CCTTG--
i caeRem4.Crem_Contig0  C 0 I 216
s caeSp111.Scaffold622    46994 5 +   386604 --tcgaa
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeJap4.Scaffold17084  263293 0 -   375229 C
e cb4.chrX              9434984 190 + 21540570 I

a score=381.000000
s ce10.chrX             4323444 62 + 17718866 GTTTTTTTGTGATTTGGAAAACGTGAAGGGTCAATTTTTATAAGATGGCATGACTAGACAAA
s caeSp111.Scaffold622    46999 44 +   386604 aagtttt-----------aaaagaaagggaccaa-------aaaatgatataacgagaaaaa
i caeSp111.Scaffold622  C 0 I 55
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeJap4.Scaffold17084  263293  0 -   375229 C
e cb4.chrX              9434984 190 + 21540570 I
e caeRem4.Crem_Contig0  1278439 216 -  4500979 I

a score=0.000000
s ce10.chrX             4323506 164 + 17718866 TGAACATGTGCCAGGTGAAAATGTATTGTTAATTATAGAGCCAGGTGTGCGGCATCTGTTTTAAAATCCCGAGAAAAGTATATTTTTCAGCAAGTTAGAAAGCAAAAGTATATTTAGTATATCAGTGATATcaaaatgaccaaatatcccagtaaagtttttca
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeJap4.Scaffold17084  263293   0 -   375229 C
e cb4.chrX              9434984 190 + 21540570 I
e caeSp111.Scaffold622    47043  55 +   386604 I
e caeRem4.Crem_Contig0  1278439 216 -  4500979 I

a score=-3514.000000
s ce10.chrX             4323670 670 + 17718866  
s cb4.chrX              9435174 537 + 21540570  
i cb4.chrX              I 190 C 0
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeJap4.Scaffold17084  263293   0 -   375229 C
e caeSp111.Scaffold622    47043  55 +   386604 I
e caeRem4.Crem_Contig0  1278439 216 -  4500979 I

a score=-1021.000000
s ce10.chrX             4324340 11 + 17718866 AAAAC-----------TCACAA
s cb4.chrX              9435711 22 + 21540570 tCTACAGCTTTCTTGTTCACTA
i cb4.chrX              C 0 I 3
s caeJap4.Scaffold17084  263293 11 -   375229 aaacc-----------tcaacA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeSp111.Scaffold622    47043 55 +   386604 I
e caeRem4.Crem_Contig0  1278439 216 -  4500979 I

a score=-1933.000000
s ce10.chrX             4324351 14 + 17718866 ATAGTCTATGAGA--T-
s cb4.chrX              9435736 15 + 21540570 GAATCCTATTAAAAT--
i cb4.chrX              I 3 I 5
s caeSp111.Scaffold622    47098 13 +   386604 ATATTCTATGAAA----
i caeSp111.Scaffold622  I 55 C 0
s caeJap4.Scaffold17084  263304 14 -   375229 TGAATTGATGAAA---T
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2569128 100 +  4147112 I
e caeRem4.Crem_Contig0  1278439 216 -  4500979 I

a score=2345.000000
s ce10.chrX             4324365 13 + 17718866 AATGCATG--TTCTC
s cb4.chrX              9435756 13 + 21540570 ACTGTCCT--CTTTT
i cb4.chrX              I 5 I 9
s caeRem4.Crem_Contig0  1278655 13 -  4500979 AATGCATG--ATCTT
i caeRem4.Crem_Contig0  I 216 I 3
s caeSp111.Scaffold622    47111 15 +   386604 ATTGCatgtaatttt
i caeSp111.Scaffold622  C 0 I 4
s caeJap4.Scaffold17084  263318 11 -   375229 --TGCATG--ATTTG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2569128 100 +  4147112 I

a score=171180.000000
s ce10.chrX             4324378 576 + 17718866  
s cb4.chrX              9435778 576 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1278671 559 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    47130 560 +   386604  
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2569228 579 +  4147112  
i caePb3.Scfld02_0      I 100 C 0
s caeJap4.Scaffold17084  263329 650 -   375229  
i caeJap4.Scaffold17084 C 0 I 19

a score=-360.000000
s ce10.chrX             4324954 4 + 17718866 TTTT
s cb4.chrX              9436354 4 + 21540570 attt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279230 4 -  4500979 ATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2569807 4 +  4147112 gtga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  263979 19 -   375229 I
e caeSp111.Scaffold622    47690 0 +   386604 C

a score=30192.000000
s ce10.chrX             4324958 151 + 17718866 TTTCAGGTTGAAAAGCGAAAGATGAGACGTTTATCCGAGATGATATCTGATTGGGAACGACCGTCAAGAAGTTCGATCAGTAACATGTATCTTTATGCGAGAAGAGAAAGCGTCTACATTGCA-------------------------------------------------------------------------------AGGAAGAAGTTGGCCGGTCTGAAAGTAA
s cb4.chrX              9436358 151 + 21540570 tttcaggttgaaaagagaaagatgCGGAGGTTGTCCGAGATGATATCGGATTGGGAGCGACCGTCGAGAAGTTCCATTAGTAATATGTACTTATACGCAAGGAGAGAAAGTGTATACATTGCA-------------------------------------------------------------------------------CGaaaaaagttggcagggctaaaagtaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279234 151 -  4500979 TTTCAGGTTGAGAAAAGGAAGATGAGAAGATTGTCCGAGATGATTTCGGATTGGGAGCGACCATCTAGAAGTTCTATCAGCAATATGTATCTATATGCGAGAAGAGAAAGTGTCTACATTGCC-------------------------------------------------------------------------------AGGAAAAAATTGGCAGGCTTGAAAGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47690  31 +   386604 ----------------------------------------------------------------------------------------------------------------------atggt-------------------------------------------------------------------------aTTCCAGGTggagaa--------acggaaaatga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2569811 151 +  4147112 tttcaggtagagaagaggaagatg------------------------------------------agaCGTT-------------------------------------TGTCAGAGATGATTTCTGATTGGGAGCGTCCTTCTAGAAGCTCAATCAGCAACATGTACCTGTATGCAAGAAGAGAGAGCGTCTACATTGCAAGGAAAAAACTAGCTGGACTGAAAGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  263998 151 -   375229 TTTCAGGTTGAGAAACGAAAAATGAGACGTTTGTCGGAAATGATTTCTGATTGGGAGCGTCCGTCAAGAAGTTCAATCAGCAATATGTACTTGTACGCTAGAAGAGAAAGTGTCTACATTGCT-------------------------------------------------------------------------------AGGAAGAAATTAGCTGGTCTAAAAGTCA
i caeJap4.Scaffold17084 I 19 I 17

a score=-10761.000000
s ce10.chrX             4325109 45 + 17718866 TAATTTGAGCTTTAAAAACAAACACACTATAAAGACTGAAAATAA
s cb4.chrX              9436509  1 + 21540570 t--------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279385  2 -  4500979 TA-------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47721  7 +   386604 gACGTTT--------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2569962 14 +  4147112 TTATTTT--------TAACAGA-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  264149 17 -   375229 I

a score=-17778.000000
s ce10.chrX             4325154 40 + 17718866 -----TCCGTTTTTAATACAAAACTGTTTAAAAAAATTTAAAAAA
s cb4.chrX              9436510  5 + 21540570 -------------------------------ttaaa---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279387  9 -  4500979 ---------------------------ACGAACACA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47728 10 +   386604 ---------------------------atcagaaatg--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2569976 30 +  4147112 ----------TTTGAAAGCATA-----ATGAGTAATGTGATGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  264166 30 -   375229 cccattttttttttcaaaaaca-----ctaaaaaa----------
i caeJap4.Scaffold17084 I 17 C 0

a score=-542.000000
s ce10.chrX             4325194 11 + 17718866 GATTCATACTT
s caeSp111.Scaffold622    47738 10 +   386604 atttctgacT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570006 10 +  4147112 AGTTTTAAGT-
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold17084  264196  0 -   375229 C
e cb4.chrX              9436515  0 + 21540570 C
e caeRem4.Crem_Contig0  1279396  0 -  4500979 C

a score=-2921.000000
s ce10.chrX             4325205 32 + 17718866 GTTGTTGTTCTAGAATGTTCATGGTTCAATTT
s cb4.chrX              9436515  6 + 21540570 --------------------------caattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279396  6 -  4500979 --------------------------CGATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47748 21 +   386604 ----------GGGAACGGCCATCG-AGAAGTT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2570016 76 +  4147112 I
e caeJap4.Scaffold17084  264196  0 -   375229 C

a score=-9470.000000
s ce10.chrX             4325237 36 + 17718866 AGATTAGCTCAAGTATGATTTTAAATATTTTTTGTT-----
s cb4.chrX              9436521 25 + 21540570 ---------tgaaaaagacaaaaaatga--tttgtt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279402 17 -  4500979 -----------GATATGACATAAAATAC-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47769 23 +   386604 ---------------CTATCAGCAATA---TGTATCTGTAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570092 27 +  4147112 ------------aaattagttgaaaTAC--TAACTTTGCat
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold17084  264196  0 -   375229 C

a score=-5243.000000
s ce10.chrX             4325273 30 + 17718866 ATATCCAGATTGAAAATACGTA-GAATATTC
s caeRem4.Crem_Contig0  1279419 13 -  4500979 ------------------ATTACGGGCActa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47792 25 +   386604 ---gcaag---aagagaaagtgtCTACATTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570119 27 +  4147112 ---tgaagtctgaaaattaatatCGAAATT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  264196  0 -   375229 C
e cb4.chrX              9436546  0 + 21540570 C

a score=-45427.000000
s ce10.chrX             4325303 199 + 17718866 AAAGAAAGACA---------TTGAAATTTGAATTACCTGCAAAATACGCATGTTTCAGCCACTTTTGGTAACTCAACGCTAAATTTTCATAAAAATTTTCCATA---------------------TCCTTTGAAACATCCGGAATCTAAAAAAAAACAAGAAAAAAACGGAAAATATTGGAACTATACCAAAATAAAATTACCGAATTTTCT---TCAACTGTCCGATTTTC
s caeRem4.Crem_Contig0  1279432  89 -  4500979 tgaaagtgaaaaaacgaagCCTGTACTCTATTTT--------------------------------ACCATCATAGCGA---------ATAGCAATTG---------------------------GTTTTTGAAC----------------ACAGACAAAAGTA---------------------------------------GTTTGTTTT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    47817  65 +   386604 CAAGGAAGAAA---------TTGGCT----------------------------------------GGATTAAAA-------------GTAATAAttt---------------------------ctttctggaa----------------------aaaaaaa---------------------------------------tcattcttttAA-----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570146 132 +  4147112 CAGGAGtgcta---------ttgttttttttttt---tg-aaaat-------------ctatcTTCGTTTTCAAACCGC---GTTCACATAATAACTTGCCGTGCAACACTAGTTTCTAGTCTCCCCTTCTTGAgaat------------aataaacaaaaaag---------------------------------------gaaatgttt--------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  264196  52 -   375229 ----------------------------------------------------------------------------------------aaagaaattc-------agGACTGGGCTCTCGA----TTTGTTGGCA------------------AAATTAAAGTC---------------------------------------TAAAC------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9436546   0 + 21540570 C

a score=72256.000000
s ce10.chrX             4325502 128 + 17718866 CAGGACTGGGCGCTGGACCTGTTAGCAAAACTGAAATCCAAGCAGGGAATGGCGATTCGTCGAGAGACTCGTGCAACCAAGTTGGTTGCAACTGTAATGGGTAACTGAAACTATTCTTTGACATTAAA-------------
s cb4.chrX              9436546 114 + 21540570 tAGGACTGGGCACTTGACCTACTAGCAAAACTGAAATCAAAACAAGGAATGGCTATTCGGAGGGAGACAAGAGCAACCAAACTTGTGGCTACAGTCATGGGTA--------------TCAgaaatgaa-------------
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0  1279521 113 -  4500979 -AGGATTGGGCATTGGACTTACTAGCAAAACTAAAGTCCAAACAAGGAATGGCTATTCGACGGGAGACACGAGCAACAAAACTAGTGGCAACTGTCATGGGTA--------------TTAACAATAAA-------------
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold622    47882 112 +   386604 -AGGACTGGGCACTGGATTTACTGGCTAAATTGAAATCTAAACAAGGAATGGCTATTCGAAGAGAAACACGAGCAACAAAATTAGTAGCAACTGTCATGGgta---------------caaaaatgaa-------------
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0      2570278 114 +  4147112 -aggATTGGGCACTGGACTTACTTGCAAAGCTAAAGTCGAAGCAAGGAATGGCCATcagaagagaaacaagagCAACCAAATTGGTGGCAACTGTCATGGGTA-------------TTTGAGAATAAT-------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  264248  94 -   375229 -------------------------------------------AAGGAATGGCTATTAGAAGAGAGACACGAGCAACTAAGCTTGTGGCAACTGTTATGGGTA----TACATACACATAAACATTAATGTTAtttgacgtt
i caeJap4.Scaffold17084 C 0 C 0

a score=-5517.000000
s ce10.chrX             4325630 16 + 17718866 ACTAAACCAAATACAT------
s caeRem4.Crem_Contig0  1279644 11 -  4500979 -----ACgcgaataat------
i caeRem4.Crem_Contig0  I 10 I 5
s caeSp111.Scaffold622    48001 16 +   386604 atgaaacgataaaaat------
i caeSp111.Scaffold622  I 7 I 4
s caePb3.Scfld02_0      2570399 16 +  4147112 AGGGGTGGAAAGtcta------
i caePb3.Scfld02_0      I 7 I 4
s caeJap4.Scaffold17084  264342 10 -   375229 ------------tcatgttttt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9436660 25 + 21540570 I

a score=138587.000000
s ce10.chrX             4325646 277 + 17718866 --TGCAGTGGTTTTTCTCGTCTGCTGGCTTCCGTTTTTCACATTGAACATGATCAAAATTTACAAATTGATATTCAACGTTTGGTCAGCGGACCTCGAAATTTGGTTCCATTGGTTTACCGCACTGGGGTATTTGAATTCGTCACTCAACTTTTTCATTTACTCAACAATCAATCCAGTAAGCATTTTTATATCAAATTTGATAGTAATTATAGAAATAATTATAATACATAATTGGCTATATAATAAAAAAGTTTAGTCGAAAAAGATTATATTTTTA
s cb4.chrX              9436685 208 + 21540570 --TTTAGTGGTCTTCCTAGTTTGCTGGCTCCCATTCTTCACATTGAATatgatcaaaatttataaGCTAATATTCAACGTGTGGTCTGCCGATTTGGAGATTTGGTTCCATTGGTTTACGGCACTGGGCTACCTCAACtcttctttgaatttcttcatCTACTCGACTATCAACCCGGTA-----------------------------------------------------------------ATAAACAACTCTTTGGTTGAATAatatatt----
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0  1279660 232 -  4500979 --ttcagttgtttttcttgtCTGCTGGCTTCCTTTCTTCACTCTCAACATGATCAAGATTTATAAGTTGATATTCAACGTGTGGTCTGCTGATTTGGAAATTTGGTTCCATTGGTTTACAGCTCTTGGATATTTGAACTCTTCGCTAAATTTCTTCATTTACTCAACTATCAACCCGGTAGG---------------TTGGATGAAAA----------------AAGACAT--------------AAAAACAGAATGATGGTACACGAATCTAACTTCG
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    48021 179 +   386604 --ttcagttgttttccTTGTCTGCTGGCTTCCGTTTTTCACATTGAACATGATCAAAATCTACAAACTCATATTTGGTGTGTGGGACACTACTTGGGAGATTTGGTTCCATTGGTTCACAGCGCTCGGATATCTGAACTCTTCTCTTAACTTCTTTATTTACTCTACAATCAACCCGGTT-----------------------------------------------------------------G---------------------------------
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2570419 212 +  4147112 --ttcagttgtCTTTCTTGTCTGCTGGCTTCCATTCTTCACTCTCAATATGATTAAAATATATAAACTAATATTCAATGTTTGGTCAACTGATATGGAGATTTGGTTCCACTGGTTCACAGCACTCGGATATCTGAACTCTtctctgaactttttcatCTACTCAACAATCAACCCCGTA-----------------------------------------------------------------AGCGTCTGGTCATCAGAACTTGATTACATTTTTA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  264352 198 -   375229 tgttcagttgtttttcttgtttgctGGCTGCCCTTCTTCACTCTCAACATGAttaaaatttacaaattgATATTCAATGTCTGGTCCGCCGATCTCGAAATCTGGTTTCACTGGTTTACAGCTCTGGGATATTTAAATTCATCTctcaactttttcatttactcGACTATTAACCCGGTA----------------------------------------------TTCAT--------------ACAAACATTTTAA---------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-3973.000000
s ce10.chrX             4325923 24 + 17718866 ATTTTTCAAGTTCAATTTGCGTTG
s caeRem4.Crem_Contig0  1279892  4 -  4500979 ---ACTC-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    48200 14 +   386604 GTTTCTCA----------GCGTTA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  264550  5 -   375229 ACTTT-------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2570631  0 +  4147112 C
e cb4.chrX              9436893  0 + 21540570 C

a score=0.000000
s ce10.chrX             4325947 11 + 17718866 TATAAAACATT
e caePb3.Scfld02_0      2570631  0 +  4147112 C
e caeJap4.Scaffold17084  264555  0 -   375229 C
e cb4.chrX              9436893  0 + 21540570 C
e caeSp111.Scaffold622    48214  0 +   386604 C
e caeRem4.Crem_Contig0  1279896  0 -  4500979 C

a score=-4006.000000
s ce10.chrX             4325958 62 + 17718866 AATTCATGGAATTGAGACAAGGTAAAACCGACAACGTTTTCCAAAATTTTGACATGTCTGTA
s caeRem4.Crem_Contig0  1279896 15 -  4500979 -----------TTGAGAC--------ACCCACAA----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  264555 19 -   375229 -------------------------------------------ACGTTCCCATATTTCTGTG
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2570631  0 +  4147112 C
e cb4.chrX              9436893  0 + 21540570 C
e caeSp111.Scaffold622    48214  0 +   386604 C

a score=0.000000
s ce10.chrX             4326020 26 + 17718866 TTCCCTCTATAGGCATTGCGCCAGCT
e caePb3.Scfld02_0      2570631  0 +  4147112 C
e caeJap4.Scaffold17084  264574  0 -   375229 C
e cb4.chrX              9436893  0 + 21540570 C
e caeSp111.Scaffold622    48214  0 +   386604 C
e caeRem4.Crem_Contig0  1279911  0 -  4500979 C

a score=-2742.000000
s ce10.chrX             4326046 32 + 17718866 TAACTCAATTTGACAAGAAATAGTAAACCCGC
s caeRem4.Crem_Contig0  1279911 12 -  4500979 --AAACAATATGAA------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2570631  6 +  4147112 -----TAACTC---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  264574  0 -   375229 C
e cb4.chrX              9436893  0 + 21540570 C
e caeSp111.Scaffold622    48214  0 +   386604 C

a score=-1119.000000
s ce10.chrX             4326078 15 + 17718866 TTAGCAAACTAAATA
s caeRem4.Crem_Contig0  1279923  1 -  4500979 --------------G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    48214 13 +   386604 TCAATAAACAAAA--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2570637  0 +  4147112 C
e caeJap4.Scaffold17084  264574  0 -   375229 C
e cb4.chrX              9436893  0 + 21540570 C

a score=-4272.000000
s ce10.chrX             4326093 40 + 17718866 TACTGAAAACTGTACTGTATAATCCATTCAACACCTCCTT
s cb4.chrX              9436893 12 + 21540570 --tacaaaaaaatg--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279924 14 -  4500979 TATTGGAGACAATG--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    48227  6 +   386604 --------ACGGAA--------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2570637  0 +  4147112 C
e caeJap4.Scaffold17084  264574  0 -   375229 C

a score=225744.000000
s ce10.chrX             4326133 339 + 17718866 TTTT--CAGAAATTCCGTCATTCATTCCGCCGCTTACTTGGCTTCCGTCGATCTTCTCGACGTCAGAGAGAAAAATCGTGGATGTTACCGCCACGAGATAGCAGCAGGTGAGCCTCAT--TTATTCGTCCATAGCTTTTAAATGTTTCATAACAGAGGTCCTGCAAAATGTGGATGCGGTTTCCATAAAATCGTGAAAAGCCCTCTGCGCAAAACGAGCTCAGCTGGGTAAGTA------CGA-----CTTTTTT-----GACAGG----TCACACATT--------TCTTCTAATAGAACACAT--TCTTGACATTCAGTTCTGACACTTCAAGTTCCGGTCAATCGTTCAGAAACAAAATATTCAAAAGGT
s cb4.chrX              9436905 349 + 21540570 -ttt--cagaaattccgtcATTCTTTCCGTAGATTGTTAGGATTCCGTCGCTCGTCACGTCGTCAACGAGAAAAATCTTGGATGCTTCCACCACGCGATAGTAGCAGGTAAACCTTATTTTTATCGCTTCTCTCTTCTAA-ATGTTTCGTAACAGAGGTCCGGCAAAATGTGGATGCGGTTTCcataaaattgtgaaaagCCCTCTGCGCAAAACGAGCTCAGCTGGGTAAGTT---GTGTGT-----TTTAGTTGTCTGAACAGGGATTTT--TAATTAACCTGATTCTTCTAACAGTAACCCTGATC----TATTCAGTTCTGACACTTCCAGTTCTGGTGACtcgtt------caaaatatttaaaaggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1279938 350 -  4500979 -TTTTACAGAAATTCCGTCATTCATTTCGTCGTTTGCTGGGATTCCGCCGATCCTCACGACGTCAACGTGAGAAGTCGTGGATGCTACCGCCCCGTGACAGTAGCAGGTACGCGTcgtattcaatttttggtagttttgataaatttaaTAACAGAGGTCCGGCGAAATGTGGCTGCGGTTTCcataaaattgtgaaaagcCCTCTGCGCAAAACGAGCTCAGCTGGGTAAGTTCTGTTGTGA-----TCTCATTTTC--GACAGG----TT--CAATT---CTAACTCTTCTAATAGAAATCCT--CC----CATTCAGTTCTGACACTTCCAGTTCGGGTCAATCGttcagaaacaaaatattcaaaaggt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    48233 331 +   386604 -GTT--CAGAAATTCCGTCATTCTTTCCGTCGTTTACTTGGATTTCGTCGTTCATCGAGACGCCAACGGGAAAAATCATGGATGCTACCCCCACGTGACAGTAGCAGGtatgaattca----atttccaaaaaactctaaaCTGTTTGATAACAGAGGACCTGCAAAATGTGGCTGCGGTTTCCATAAAATTGTGAAAAGCCCTCTGCGCAAAACGAGCTCAGCTGGGTAAGTT-AGATCTGATTCTGTTCATTT-----AACAGG----TG---AATC--------TCTTCTAA----AACCCT--TCC--ACATTCAGTTCTGACACTTCCAGTTCTGGTCAATcgtt------caaaatattcaaaaggt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570637 327 +  4147112 ------CAGAAATTTCGTCATTCATTTCGTCGGTTGCTTGGATTCCGTCGTTCTTCCAGACGTCAACGGGAGAAATCTTGGATGCTCCCTCCACGTGATAGCAGCAGGTATG---TCAaaacattatttgaaatttttgaactatatTCCAACAGAGGTCCTGCAAAATGTGGATGCGGTTTCCATAAAATTGTCAAAAGCCCTCTCCGCAAAACTAGCTCGGCTGGGTAAGTT-AATTGTGA-----CACAATT-----GACAAG----TT--CAATC--------TCTTCTAATAGTAACCCT--CC----CATTCAGTTCTGAGACTTCCAGTTCTGGTCAATcgtt------caaaatattcaaaaggt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  264574 329 -   375229 TTTA--TAGAAATTCCGTCACTCCTTCCGTCGTTTGCTCGGATTCCGAAGATCTTCTCGCCGTCAAAGGGAAAAATCATGGATGCTACCCCCAAGAGATAGTAGCAGGTCGGTTTCATTTCTTTCGGCAAGAAA---TAACTGTTTTCATGACAGGGGTCCGGCTAAATGCGGGTGTGGGTTCCACAAAATTGTGAAAAGTCCTTTGCGAAAGACAAGCTCGGCTGGGTAAGTG-----ATGA-----CTCCTAA-----AAATTA----TA--ACACA--------TTGTTTAA----AACTAT--AT----TGTTCAGTTCTGAAACATCTAGTTCTGGCCACTCGTTAAGAATCAAAATGTTTAAAAGGT
i caeJap4.Scaffold17084 C 0 I 36

a score=-7433.000000
s ce10.chrX             4326472 30 + 17718866 G--------TTTGAAAGGATAATAATCATAATAATAGA
s cb4.chrX              9437254 37 + 21540570 taaaaaacatttttaaagat-aTACTTTTAAAGTTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1280288 16 -  4500979 T--------TTTGTCTGGA--------------TTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    48564 17 +   386604 t-------ttttgaaaatg--------------ataga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2570964 11 +  4147112 T-------------AAAGC--------------ATAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  264903 36 -   375229 I

a score=134316.000000
s ce10.chrX             4326502 466 + 17718866  
s cb4.chrX              9437291 447 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1280304 471 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622    48581 471 +   386604  
i caeSp111.Scaffold622  C 0 I 28
s caePb3.Scfld02_0      2570975 489 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  264939 487 -   375229  
i caeJap4.Scaffold17084 I 36 C 0

a score=-1040.000000
s ce10.chrX             4326968 16 + 17718866 TTGTGTTACTTTTCTA
s cb4.chrX              9437741 16 + 21540570 GTTTGTGCGTTTTCTT
i cb4.chrX              I 3 I 23
s caeRem4.Crem_Contig0  1280781 16 -  4500979 ATGTGTGTTTTTGATA
i caeRem4.Crem_Contig0  I 6 I 18
s caePb3.Scfld02_0      2571466  8 +  4147112 -----TGCTTTCA---
i caePb3.Scfld02_0      I 2 I 5
s caeJap4.Scaffold17084  265426 14 -   375229 --gtgtgTTTTCAGAG
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    49052 28 +   386604 I

a score=-17794.000000
s ce10.chrX             4326984 45 + 17718866 --CAA-AATAATAACTAGCTGATGTTAATTTCTAAATAAAAAT---TAATC-----------
s cb4.chrX              9437780 22 + 21540570 --gaa-attat-----------------------ttttgaaac---tggat-----------
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0  1280815 37 -  4500979 --CGA-ACTGT--------AGGCGTAAAATAGAACATGAAAAC---CGGAT-----------
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold622    49080 36 +   386604 --caa-aatgt--------agaTGTTAATT----CAGTAAGACACATATAC-----------
i caeSp111.Scaffold622  I 28 I 12
s caePb3.Scfld02_0      2571479 32 +  4147112 --CAATAATTG--------AAGTGTCAAAT----TTTTAGG-----TGTAA-----------
i caePb3.Scfld02_0      I 5 I 27
s caeJap4.Scaffold17084  265440 48 -   375229 CAGGA-AAAAA--------GCTCATAGATTTTTATAATAAG-----CGGAGAAATTTGTGAC
i caeJap4.Scaffold17084 C 0 C 0

a score=-1830.000000
s ce10.chrX             4327029 11 + 17718866 GTTTAACTTAT----
s cb4.chrX              9437802  4 + 21540570 -------ttat----
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1280852  4 -  4500979 -------TTTC----
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold17084  265488 15 -   375229 GTTAAAGTTCGAGAT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2571511 27 +  4147112 I
e caeSp111.Scaffold622    49116 12 +   386604 I

a score=81820.000000
s ce10.chrX             4327040 115 + 17718866 AAT-----AAATGT-----GCTTC---AATTTCAGGCGATCTTCGGATGATTGTATTCGTAGATCATCTTCTGAAATAATCGGCGGTATCACTCTTCCATCTCAAAGTAGTAATGATAAACGAAGGT---A
s cb4.chrX              9437816 116 + 21540570 aacatgcaaaatct-----a-------attttcagacgttCATCCGATGATTGCATCCGTCGATCATCATCAGAAATCATCGGTGGTATCACTCTTCCTTCCCAAAGTAGCAATGATAAACGAAGGT---T
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0  1280863 109 -  4500979 AAT-----AAATTG-----A---------TTTCAGGCGATCCTCCGATGATTGCATTCGTagatcttcttctgaaattattggtGGCATTACTCTTCCATCACAAAGTAGCAATGATAAGCGAAGGT---T
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    49128 110 +   386604 ----------ATCG-----AGT-----GTTTTCAGGCGATCATCTGATGACTGTATTCGTAGatcttcatcagaaattATTGGCGGTATTACTCTTCCTTCTCAAAGTAGCAATGATAAAAGAAGGTGAA-
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0      2571538 116 +  4147112 aat------aatcatttttttt-----attttcaggcgATCCTCAGATGACTGTATCCGTcgatcttcttctgaaattattggCGGTATTACTCTTCCTTCTCAAAGTAGTAATGATAAGAGAAGGT----
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17084  265503 118 -   375229 -----TAAAAatgg-----aatttaaatttttcaggcGATCTTCTGATGATTGCATCCGAAGGTCATCTTCCGAAATCATTGGGGGTATTGCTCTTCCATCACAGAGCAGTAACGATAAAAGACGGT---A
i caeJap4.Scaffold17084 C 0 I 479

a score=573.000000
s ce10.chrX             4327155 2 + 17718866 TG
s cb4.chrX              9437932 2 + 21540570 TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1280972 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 I 32
e caePb3.Scfld02_0      2571654 0 +  4147112 C
e caeJap4.Scaffold17084  265621 479 -   375229 I
e caeSp111.Scaffold622    49238 0 +   386604 C

a score=-8628.000000
s ce10.chrX             4327157 33 + 17718866 TATTTCCCTTCATCTTACAGATTGTGTTAACTA-------------------
s cb4.chrX              9437934 31 + 21540570 ---------CCAAGTTAC---CTGAGTAGCTTCAaaccatttt---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    49238 27 +   386604 ---------CCA---------CTGGattaattt---caattctaaAC----A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2571654 28 +  4147112 ----------------------TGGTTGAATTG--ACAAGTTGAGACAACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  265621 479 -   375229 I
e caeRem4.Crem_Contig0  1280974 32 -  4500979 I

a score=-2330.000000
s ce10.chrX             4327190  5 + 17718866 ------CATGT
s cb4.chrX              9437965  5 + 21540570 ------caaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1281006  5 -  4500979 ------TATGT
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold622    49265  7 +   386604 AACC----GTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2571682 11 +  4147112 AACCTGGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  265621 479 -   375229 I

a score=113660.000000
s ce10.chrX             4327195 113 + 17718866 -TTGCAGAGGATCCGGTATGTCAAATAGTTCAGCATCTCTCCATATCCATGAAACGCGAATGACGTTCGAAGCAATGGTCAACGATCAGGCTGATTGCGAAATTTTTGTTTA----------------------------AT
s cb4.chrX              9437970 139 + 21540570 -tt--agggGATCTGGCATGTCCAATAGTTCAGCATCCCTTCATATTCACGAAACTCGAATGACGTTTGAAGCAATGGTTCAGGACCAAGCTGATTGCGAGATTTTCGTGTGATTTCATTCCCATAAAAATGTTATTCctat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1281011 112 -  4500979 -TT-CAGAGGATCTGGCATGTCTAATAGTTCAGCATCTCTTCATATCCATGAAACTCGAATGACGTTTGAAGCTATGGTCAACGATCAAGCAGATTGCGAAATTTTCGTTTG----------------------------at
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    49272 112 +   386604 -TT-CAGAGGCTCTGGCATGTCAAATAGCTCAGCATCTCTTCATATCCATGAAACTCGCATGACGTTTGAAGCTATGGTCAACGATCAAACGGATTGcgaaatttttgttta----------------------------at
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2571693 112 +  4147112 -TG-CAGAGGTTCTGGTATGTCGAATAGTTCAGCATCTCTTCATATCCATGAAACTCGAATGACGTTTGAAGCTATGGTCAACGATCAAGCAGATTGCGAAATTTTCGTTTA----------------------------AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  266100 113 -   375229 TTC-CAGAGGTTCCGGCATGTCAAACAGTTCAGCTTCTCTGCACATTCATGAAACTCGAATGACTTTTGAAGCAATGGTGAACGATCAAGTAGactgtgaaatttttgttta----------------------------at
i caeJap4.Scaffold17084 I 479 I 715

a score=26376.000000
s ce10.chrX             4327308 146 + 17718866 TTTGTCCCCCCCCCCCCCCCCTCCAATTCCCGGTCACGTCTTGATCTCC---TACCTATTACAACGAGTGTGTATGTATTTACAATTCTTCTTGCCACATTTTTTCTGTGGATCTCATTTTTTAT--AAA-------ATTGAATTTTG--------------TCGACTGTTT
s cb4.chrX              9438109 149 + 21540570 attattttt--------------caattttcggacaCGTTTTGATCTCA-ATCCCCCGTTATAACGAGTGTTTATGTAATTACGTTTTTTCCTGCGATG---TT---GTGgtcttttctctattt--tgaTACCATTACTGcatttcccttcttttttgcaaataaatgttt
i cb4.chrX              C 0 I 1301
s caeRem4.Crem_Contig0  1281123 132 -  4500979 aatattttc--------------caatttccggtCACGTCTTGATCTCA-A---CCTATCACAACGAGTGTCTATGTATTTTCCATTCCTCTTGCCACG---TTTCAGTGGTTCATGTTCTCTTT--GAATTA---TATTGAATTACT--------------Atgtatgttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    49384 131 +   386604 aATTCTTCACC------------CAGTTTCCGGTCATGTCTTGATCTCA-AATTATTACAACAACGAGTGTTTATgtatttact--ttttcatgCCACTTCTTTTCTGTGGTCCA---TTTCTTT--GAA-------TCTAAATTATT--------------GGGTCtgact
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2571805 138 +  4147112 AATCTCTCTCCC----------ACAATTTCCGGTCACATCTTGATCTCACCCCTATTACAACAACGAGTGCCTATGTATTTACCAATTTTCTTGCCCCACATTTTTCGTGGTCCG---ACTCTTTcctca-------attgaattttt--------------tcgtcagttt
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17084  266213 715 -   375229 I

a score=405.000000
s ce10.chrX             4327454 20 + 17718866 -TTCCTTTTGAATAAATTAT-T
s caeRem4.Crem_Contig0  1281255 20 -  4500979 -ttattttcgaaaaaattatt-
i caeRem4.Crem_Contig0  C 0 I 668
s caeSp111.Scaffold622    49517 20 +   386604 tttttttgcaataaacttat--
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2571953 17 +  4147112 tttcttttcaaacaac---t--
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I

a score=-2995.000000
s ce10.chrX             4327474 221 + 17718866 CAGCAATTCTAACAATTTT-------------TTTTG-------------GAAACACAGT---ATAATATTC--ATCGAAA-----CCATCCCTAAAATCACAAAGTTTGAGATC-------------AAGCTTGAAAATCTATCTAAAGAAAAATTATG-----ATTATTGTCCGTCAATCCGTGGAACTTTCGATA---------AATGAGGAGCTG-CTGA----CGGTTCTGCTGTACGTGGCAAT-AATCGCTGAAAAACTTATTCCGGATATATTTTTTTAAAA
s caeSp111.Scaffold622    49537 247 +   386604 ttctatttttaagagttcatagaaaatgagg-attca-----------ataaaaagtgat---gttaacttttatttcaaatgagGGAAACCATTGTATCACAATGATGGAgatc--------------gtttttcaaaatgaacta--AACAAATGGGATACACATTATTGTTCG---ACAcgtggaatttttgaatgcgATGGGCAGCCCGATGATG-TTGA----TGG----GAGGGAACTGGGAAGCACGcgctgaaatcaaaatttctagTCTAAGTTCTTAAAA
i caeSp111.Scaffold622  C 0 I 222
s caePb3.Scfld02_0      2571970 262 +  4147112 ttttgaatatgcCGGTTCCgagagaataaaatatttactCTAACTAATATGAGAAACGatcaaatgaaacat--tttcaaa--aatcgatccTTAATATCACAAGGAATGAGATCTTATTGGAAGAATGGTTTTGGAGAATTGaccattttcaaattaga-----atTGATGTTCG---ATTCgtggaatttttgagagtGGAGCAGAGTAAGATGAAGATTGAGCGCTGGT--AGATGGAGTTGGCAAG-GTTCTCTGAaagatatatttttgg-------------aa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=-426.000000
s ce10.chrX             4327695 169 + 17718866 GTGAACACCATATCTCTATCAGAATGACATGGAAAACATTTTTCAGGGTGT-TAAATTGTCAAATTCAAAACTAAACCTACTAGTTTTAATT---AATTAATTGAATTTTTTCCTCAAAATTTTATTACATTTTTTG-ATCTTATTT---TTGTTCTATAAAATGTTTCGGGTTTTT
s caePb3.Scfld02_0      2572232 141 +  4147112 -----------------attaagaAGGGATGGGAAAAACATTT---AGTGTATACAccg--aaattcata---aaatttcattGTCATGATTGAGAGCtgcatgaa----------aaaaatgctctATACTTGATGAAACTCAATTCAATGGTTCT-TAACATGcgccagtttttt
i caePb3.Scfld02_0      C 0 I 127
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=0.000000
s ce10.chrX             4327864 144 + 17718866 TGAAAAGTGTGACCAGAAAATTCAAAATGTTTTTTTTTTACTCTTTGTTCCATTGAATGGTTTTGGTCTTATTTTATATGGTTTTATTTAAATGTATTAATTTACCGTATGAACAAGAATTTTTAAAAATTTGGTTCAAAATGT
e caePb3.Scfld02_0      2572373 127 +  4147112 I
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=-1503.000000
s ce10.chrX             4328008 344 + 17718866 ATAATATCTAATCCTGTTAACATCAAGATTGAGAA-ATCTATTTGAAAAATTTTCCAAAAAAATCGAAAACTTATTCTTGCTACTTTATTTTTTGAATTAAAATTGGCGACCGACAACTTTGGCCATTTCTGGAATTGACCCGTTTT--GGAAAAAAAATCAGTCATCTTTTTTGTATTCCGACAATCATTTTGTTTTAATTCACTAATTCAAATTTTAAGACACTTTGAgaatattttcggcaattgtcaattccggcgataattagcttgaggaaatatttggcaaattcggcaattgctggttttTGCGGTTTTTTTTTTGATTTTTGGAAATTAATTATTGCC
s caePb3.Scfld02_0      2572500 221 +  4147112 GCAATTTCTAGAGCCATTGAAAACACAACTAGGAATATGAGTACTAGGtattttc-----attccaaacactccatttt----ctttccttttttggtggaact--------------tttatgcactttttgaaatatgcaGTTTTCAGAAGGTACAAtgaattttgttctttttatcctga-----------------------aattcaaagt---------------aatgcttt----------------------------------------------------------ttttcagtttttgacgtttttcttc--atcattcaaaa-----tatttcc
i caePb3.Scfld02_0      I 127 I 23
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=0.000000
s ce10.chrX             4328352 41 + 17718866 GCACACACCTAATTTGTATCAACCTAATAAATATATAATGG
e caePb3.Scfld02_0      2572721 23 +  4147112 I
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=71.000000
s ce10.chrX             4328393 115 + 17718866 ATTTAGAGTTCTGCTTTTTACAG-----CAAACTTCAAACACTCCTGTCCAGTCGGACTTAACAGAAGTGTTGTAATTGAATGTAGAGAATATAAAGAGTCAAATTGCGACACTAAAATT
s caePb3.Scfld02_0      2572744  72 +  4147112 ATctaaaatttcactttttccaatttcctaaatttca---------------------ttgaaagaCGTGATGTAATCTAA------------AAAGATTAGAAT---------------
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I
e caeRem4.Crem_Contig0  1281275 668 -  4500979 I

a score=-64.000000
s ce10.chrX             4328508 14 + 17718866 AAAAATTCACTGTC-------
s caeRem4.Crem_Contig0  1281943 21 -  4500979 AATAGTTCAATGTATATGAAT
i caeRem4.Crem_Contig0  I 668 C 0
e caePb3.Scfld02_0      2572816  0 +  4147112 C
e caeJap4.Scaffold17084  266213 715 -   375229 I
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I

a score=1492.000000
s ce10.chrX             4328522  92 + 17718866 TACCTTTTCTGTAGATCGAGTG---------AGTCCTCTCTCATTCTCCAAAGTGGCGTTCATCCGCGTTCTCTGAGTGCTTGGCGATGTT-TCGGTAATAT--------
s caeRem4.Crem_Contig0  1281964  90 -  4500979 TACCTTCTCAATAACTCGACTA------------CCTCCTCCGATTTGCGCACTGCTGCTAGCTCGTCCTAGTTGTTCGTTCTGCGCAGTAGTCGTTGACGT--------
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      2572816 102 +  4147112 TACCTTTTCAATTGTCCGACTAAATCCTCCAAATCCTCCTACAGCTGTCGCACTGCTGTGCGGTCTACCTTTGTCATTATTCTGCGCAGCCGTCGTTGGCGA--------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  266928  95 -   375229 TACCTTGTCAATATGCCGACAG---------AGCCCTGTT---ATTTGCACGCGTGTGTTCTCCTTCCTTTCTTGC---TTCGGTTGTGTACTCGTTGACACCGTGACAT
i caeJap4.Scaffold17084 I 715 C 0
e cb4.chrX              9438258 1301 + 21540570 I
e caeSp111.Scaffold622    49784 222 +   386604 I

a score=9741.000000
s ce10.chrX             4328614 33 + 17718866 TTCTTTGACTTATTGATTCTTGTCCGACCCGAT
s caeRem4.Crem_Contig0  1282060 32 -  4500979 -CCTTTGATTTATTAGTTCCTGTCCGGCCTGCT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622    50006 33 +   386604 TTCTTTGATTTATTGGTTCTGGCTGAGCATTCT
i caeSp111.Scaffold622  I 222 C 0
s caePb3.Scfld02_0      2572923 33 +  4147112 TTCTTTGATTTATTGGCTCCGGCTGAGAACGTT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  267023 20 -   375229 TACTTTGACTCATCGACTCC-------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9438258 1301 + 21540570 I

a score=73263.000000
s ce10.chrX             4328647 366 + 17718866  
s cb4.chrX              9439559 426 + 21540570  
i cb4.chrX              I 1301 C 0
s caeRem4.Crem_Contig0  1282092 381 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    50039 372 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2572956 378 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  267043 406 -   375229  
i caeJap4.Scaffold17084 C 0 I 1823

a score=16712.000000
s ce10.chrX             4329013 47 + 17718866 CA-TACTGCATTTATC-ATTAGATCAACTGGCAAC--------AATTTCTATCT--TCT--
s cb4.chrX              9439985 57 + 21540570 CACTTCTACATTTATCAACTGATCAAATCGGCAACATACACAAACTTTCTATCA--TCT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1282473 47 -  4500979 CA-TTCTGCATTTATC-ATTGAATCAATCGGCAAC--------ACGTCCTATCT--TCT--
i caeRem4.Crem_Contig0  C 0 I 286
s caeSp111.Scaffold622    50411 55 +   386604 CA-TTATGCATTTATC-ATTGGATCTATCGGCGGCAG----GAAATTTCTATCTTCTCTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2573334 52 +  4147112 CA-TTCCGCATTTATC-ATTGAATCAATCGGCGGCa-----aaattttctatct--tctCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  267449 1823 -   375229 I

a score=-720.000000
s ce10.chrX             4329060 3 + 17718866 GCT-
s cb4.chrX              9440042 3 + 21540570 -TCT
i cb4.chrX              C 0 I 449
s caeSp111.Scaffold622    50466 3 +   386604 GTT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2573386 3 +  4147112 GTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=1146.000000
s ce10.chrX             4329063 4 + 17718866 TTGC
s caeSp111.Scaffold622    50469 4 +   386604 TTGC
i caeSp111.Scaffold622  C 0 I 411
s caePb3.Scfld02_0      2573389 4 +  4147112 TTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=581.000000
s ce10.chrX             4329067  81 + 17718866 AACGGGCAC-ATTTGTTCACTCTCAACC---------------ACTTT---TATCATGAAATGTT-----TCTCTTTTTTCGCTTGAGTTACATCTTTGAAGAAA
s caePb3.Scfld02_0      2573393 104 +  4147112 GAAGTGCACAAAGTGTTCCGTCAAAGCCGGAGATTTGTGTGAGGTTTTGTATATCATGAAACGTCGCATATCTCttcttttgcaaaaattttct-ttcgaaaaaa
i caePb3.Scfld02_0      C 0 I 370
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I
e caeSp111.Scaffold622    50473 411 +   386604 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=0.000000
s ce10.chrX             4329148 517 + 17718866  
e caePb3.Scfld02_0      2573497 370 +  4147112 I
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I
e caeSp111.Scaffold622    50473 411 +   386604 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=91.000000
s ce10.chrX             4329665 1 + 17718866 T
s caeSp111.Scaffold622   336820 1 -   386604 T
i caeSp111.Scaffold622  n 411 C 0
e caePb3.Scfld02_0      2573497 370 +  4147112 I
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=-1572.000000
s ce10.chrX             4329666 220 + 17718866 TTTAAAAAAATATATCCGGAATAAGTTTTTCAGCGATT-ATTGCCA-------CGTACA----GCAG-AACCGTCAGCAGCTCCTCATTTATCGAAAGTTCCACGGATTGACGGACAATAAT-----CATAATTTTTCTTTAGATAGATTTTCAAGCTT-------------GATCTCAAACTTTGTGATTTTAGGGATGG-----TTTCGATGAATATTATAC---TGTGTTTCCAAAA----------AAAAT-TGTTA--------GAATTGCTG
s caeSp111.Scaffold622   336821 237 -   386604 TTTAAGAACTTAGActagaaattttgatttcagcgCGTGCTTCCCAGTTCC--CTCCCA----TCAA-CATCATCGGGCTGCCCATcgcattcaaaaattccacgTGT---CGAACAATAATGTGTATCCCATTTG--TTtagttcattttgaaaaac--------------gatcTCCATCATTGTGATACAATGGTTTCCctcatttgaaataaaagttaac---atcactttttat-----------tgaat-cctcattttctatgaactctta
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      1574879 254 -  4147112 ttt-----------ccaaaaatatatcttTCAGAGAAC-CTTGCCAACTCCATCTACCAGCGCTCAATCTTCATCTTACTCTGCTCCactctcaaaaattccacGAAT---CGAACATCAat-----tctaatttgaaaatggtCAATTCTCCAAAACCATTCTTCCAATAAGATCTCATTCCTTGTGATATTAAggatcgatt--tttgaa--aatgtttcatttgatCGTTTCTCATATTAGTTAGagtaaatattttattctctcGGAACCGgca
i caePb3.Scfld02_0      n 370 C 0
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I
e caeRem4.Crem_Contig0  1282520 286 -  4500979 I

a score=-365.000000
s ce10.chrX             4329886 20 + 17718866 --------AATAATTTATTCAAAAGGAA-----------
s caeRem4.Crem_Contig0  3219704 20 +  4500979 --------aataattttttcgaaaataa-----------
i caeRem4.Crem_Contig0  n 286 C 0
s caeSp111.Scaffold622   337058 31 -   386604 aaaatagaaataagtttattgcaaaaaa--------aaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      1575133 36 -  4147112 tattcaaa---aagttgtttgaaaagaaactttgagaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  267449 1823 -   375229 I
e cb4.chrX              9440045 449 + 21540570 I

a score=20828.000000
s ce10.chrX              4329906 146 + 17718866 AAACAGTCGA--------------CAAAATTC---AA----TTTT--ATAAAAAATGAGATCCACAGAAAAAATGTGGCAAGAAGAATTGTAAATACATACACACTCGTTGTAATAGGT---AGGAGATCAAGACGTGACCGGGAAT--TGGAGGGGGGGGGGGGGGGGACAAA----------------------------
s cb4.chrX              12102312 177 - 21540570 aaacatttatttgcaaaaaagaagggaaatgCAGTAATGGTAtca--aaatagagaaaagacCAC---AA---CATCGCAGGAAAAAACGTAATTACATAAACACTCGTTATAACGGGG-GATTGAGATCAAAACGtgtccgaaaat--tga--------------aaaataatatagGAATAACATTTTTATGGGAATGAA
i cb4.chrX              n 449 C 0
s caeRem4.Crem_Contig0   3219724 132 +  4500979 aaacatacaT--------------AGTAATTC---AATATAATTC--AAAGAGAACATGAACCACTGAAA---CGTGGCAAGAGGAATGGAAAATACATAGACACTCGTTGTGATAGG----TTGAGATCAAGACGTGaccggaaat--tgg--------------aaaatatt----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337089 131 -   386604 agtcaGACCC--------------AATAATTT---AG----ATTC--AAAGAA---ATGGACCACAGAAAAGAAGTGGcatgaaaa--agtaaatacATAAACACTCGTTGTTGTAATA-ATTTGAGATCAAGACATGACCGGAAAC--TGG------------GTGAAGAATt----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1575169 138 -  4147112 aaactgacga--------------aaaaattc---aa----ttgaggAAAGAG---TCGGACCACGAAAAATGTGGGGCAAGAAAATTGGTAAATACATAGGCACTCGTTGTTGTAATAGGGGTGAGATCAAGATGTGACCGGAAATTGTGG------------GAGAGAGATT----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   267449 1823 -   375229 I

a score=117860.000000
s ce10.chrX              4330052 113 + 17718866 ATTAAACAAAAATTTCGCAATCAGCCTGATCGTTGACCATTGCTTCGAACGTCATTCGCGTTTCATGGATATGGAGAGATGCTGAACTATTTGACATACCGGATCCTCTGCAA-
s cb4.chrX              12102489 111 - 21540570 ATCACACGAAAATCTCGCAATCAGCTTGGTCCTGAACCATTGCTTCAAACGTCATTCGAGTTTCGTGAATATGAAGGGATGCTGAACTATTGGACATGCCAGATCccct--aa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3219856 112 +  4500979 atCAAACGAAAATTTCGCAATCTGCTTGATCGTTGACCATAGCTTCAAACGTCATTCGAGTTTCATGGATATGAAGAGATGCTGAACTATTAGACATGCCAGATCCTCTG-AA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337220 112 -   386604 attaaacaaaaatttcgCAATCCGTTTGATCGTTGACCATAGCTTCAAACGTCATGCGAGTTTCATGGATATGAAGAGATGCTGAGCTATTTGACATGCCAGAGCCTCTG-AA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1575307 112 -  4147112 ATTAAACGAAAATTTCGCAATCTGCTTGATCGTTGACCATAGCTTCAAACGTCATTCGAGTTTCATGGATATGAAGAGATGCTGAACTATTCGACATACCAGAACCTCTG-CA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   109016 113 +   375229 attaaacaaaaatttcacagtCTACTTGATCGTTCACCATTGCTTCAAAAGTCATTCGAGTTTCATGAATGTGCAGAGAAGCTGAACTGTTTGACATGCCGGAACCTCTG-GAA
i caeJap4.Scaffold17084 n 1823 I 479

a score=-4473.000000
s ce10.chrX              4330165 5 + 17718866 ACATG----
s cb4.chrX              12102600 5 - 21540570 atttg----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3219968 5 +  4500979 ACATA----
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold622    337332 5 -   386604 AA----CGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1575419 9 -  4147112 AAATCCAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   109129 479 +   375229 I

a score=-6521.000000
s ce10.chrX              4330170 33 + 17718866 --TAGTTAACACAATCTGTAAGATGAAGGGAAATA----
s cb4.chrX              12102605 31 - 21540570 -aaaatggttTGAAGCTAC----TCAGGTAACTTGG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    337337 29 -   386604 T----TTGTttagaattg------aaattaatCCAGTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1575428 30 -  4147112 TTTAGTTGTCTCAACTTG-----TCAATTCAACCA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   109129 479 +   375229 I
e caeRem4.Crem_Contig0   3219973 32 +  4500979 I

a score=111.000000
s ce10.chrX              4330203 2 + 17718866 CA
s cb4.chrX              12102636 2 - 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3220005 2 +  4500979 CA
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold622    337366 2 -   386604 TT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       1575458 0 -  4147112 C
e caeJap4.Scaffold17084   109129 479 +   375229 I

a score=89025.000000
s ce10.chrX              4330205 115 + 17718866 TACCTTCGTTTATCATTACTACTTTGAGATGGAAGAGTGATACCGCCGATTATTTCAGAAGATGATCTACGAATACAATCATCCGAAGATCGCCTGAAATTGAAGCACATT-----TATT-----
s cb4.chrX              12102638 116 - 21540570 AACCTTCGTTTATCATTGCTACTTTGGGAAGGAAGAGTGATACCACCGATGATTTCTGATGATGATCGACGGATGCAATCATCGGATGaacgtctgaaaat----tagattttgcatgtt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3220007 109 +  4500979 AACCTTCGCTTATCATTGCTACTTTGTGATGGAAGAGTAATGCCaccaataatttcagaagaagatctACGAATGCAATCATCGGAGGATCGCCTGAAA------TCAATT-----TATT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337368 108 -   386604 CACCTTCTTTTATCATTGCTACTTTGAGAAGGAAGAGTAATACCGCCAATaatttctgatgaagatCTACGAATACAGTCATCAGATGATCGCCTGAAAAC-------ACT-----CGAT-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1575458 112 -  4147112 -ACCTTCTCTTATCATTACTACTTTGAGAAGGAAGAGTAATACCGccaataatttcagaagaagatcgACGGATACAGTCATCTGAGGATcgcctgaaaat--aaaaaaaa-----tgat-----
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17084   109608 118 +   375229 TACCGTCTTTTATCGTTACTGCTCTGTGATGGAAGAGCAATACCCCCAATGATTTCGGAAGATGACCTTCGGATGCAATCATCAGAAGATCgcctgaaaaa--tttaaatt-----ccatTTTTA
i caeJap4.Scaffold17084 I 479 C 0

a score=-3270.000000
s ce10.chrX              4330320 11 + 17718866 ATAAGTTAAAC------
s cb4.chrX              12102754  6 - 21540570 -----tcaatt------
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   3220116  6 +  4500979 -----TCGATT------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    337476  6 -   386604 -----ATGATT------
i caeSp111.Scaffold622  C 0 I 5
s caeJap4.Scaffold17084   109726 15 +   375229 --ATCTCGAACTTTAAC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1575570 24 -  4147112 I

a score=-21742.000000
s ce10.chrX              4330331 45 + 17718866 --GATTAATTTTTA-------TTTAGA-AATTAACATCAGCTAGTTATTATT-TTG-
s cb4.chrX              12102768 22 - 21540570 --atccagtttcaaaa-------------------------------ataat-ttc-
i cb4.chrX              I 8 I 23
s caeRem4.Crem_Contig0   3220127 37 +  4500979 --ATCCGGTTTTCATGT----TCT----ATTTTACGCC--------TACAGT-TCG-
i caeRem4.Crem_Contig0  I 5 I 18
s caeSp111.Scaffold622    337487 37 -   386604 --------TGTATATGT--GTCTTACTGAATTAACAtc--------tacatt-ttg-
i caeSp111.Scaffold622  I 5 I 28
s caePb3.Scfld02_0       1575594 39 -  4147112 --GACTAATTTACA-------CCTAAAAATTTGACACT--------TCAATTATTG-
i caePb3.Scfld02_0      I 24 I 5
s caeJap4.Scaffold17084   109741 48 +   375229 GTCACAAATTTCTCCGCTTATTATAAAAATCTATGAGC--------TTTTTT-CCTG
i caeJap4.Scaffold17084 C 0 C 0

a score=-1840.000000
s ce10.chrX              4330376 16 + 17718866 TAGAAAAGTAACACAA
s cb4.chrX              12102813 16 - 21540570 AAGAAAACGCACAAAC
i cb4.chrX              I 23 I 3
s caeRem4.Crem_Contig0   3220182 16 +  4500979 TATCAAAAACACACAT
i caeRem4.Crem_Contig0  I 18 I 6
s caePb3.Scfld02_0       1575638  8 -  4147112 ---TGAAAGCA-----
i caePb3.Scfld02_0      I 5 I 2
s caeJap4.Scaffold17084   109789 14 +   375229 CTCTGAAAAcacac--
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    337524 28 -   386604 I

a score=136587.000000
s ce10.chrX              4330392 466 + 17718866  
s cb4.chrX              12102832 447 - 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   3220204 471 +  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622    337552 471 -   386604  
i caeSp111.Scaffold622  I 28 C 0
s caePb3.Scfld02_0       1575648 489 -  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084   109803 487 +   375229  
i caeJap4.Scaffold17084 C 0 I 36

a score=-7836.000000
s ce10.chrX              4330858 30 + 17718866 TCTATTATTATGATTATTATCCTTTCAAA--------C
s cb4.chrX              12103279 37 - 21540570 TCAAACTTTAAAAGTA-tatctttaaaaatgtttttta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3220675 16 +  4500979 TCTA--------------ATCCAGACAAA--------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338023 17 -   386604 tctatc------------attttcaaaa---------a
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1576137 11 -  4147112 TCTATG------------CTTT---------------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   110290 36 +   375229 I

a score=223433.000000
s ce10.chrX              4330888 339 + 17718866 ACCTTTTGAATATTTTGTTTCTGAACGATTGACCGGAACTTGAAGTGTCAGAACTGAA--TGTCAAGA--ATGTGTTCTATTAGAAGA--------AATGTGTGA----CCTGTC-----AAAA-----AAGTCG------TACTTACCCAGCTGAGCTCGTTTTGCGCAGAGGGCTTTTCACGATTTTATGGAAACCGCATCCACATTTTGCAGGACCTCTGTTATGAAACATTTAAAAGCTATGGACGAA----TAAA--TGAGGCTCACCTGCTGCTATCTCGTGGCGGTAACATCCACGATTTTTCTCTCTGACGTCGAGAAGATCGACGGAAGCCAAGTAAGCGGCGGAATGAATGACGGAATTTCTG--AAAA
s cb4.chrX              12103316 349 - 21540570 accttttaaatattt------tgaacgaGTCACCAGAACTGGAAGTGTCAGAACTGAA--TA----GATCAGGGTTACTGTTAGAAGAATCAGGTTAATT--AAAAATCCCTGTTCAGACAACT-----AAAACACAC---AACTTACCCAGCTGAGCTCGTTTTGCGCAGAGGGcttttcacaattttatgGAAACCGCATCCACATTTTGCCGGACCTCTGTTACGAAACAT-TTAGAAGAGAGAAGCGA----TAAAAATAAGGTTTACCTGCTACTATCGCGTGGTGGAAGCATCCAAGATTTTTCTCGTTGACGACGTGACGAGCGACGGAATCCTAACAATCTACGGAAAGAATgacggaatttctg--aaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3220691 350 +  4500979 accttttgaatattttgtttctgaaCGATTGACCCGAACTGGAAGTGTCAGAACTGAA--TG----GG--AGGATTTCTATTAGAAGAGTTAG---AATT--GAA----CCTGTC--GAAAATG-----AGATCACAACAGAACTTACCCAGCTGAGCTCGTTTTGCGCAGAGGgcttttcacaattttatgGAAACCGCAGCCACATTTCGCCGGACCTCTGTTAttaaatttatcaaaactaccaaaaat----tgaatacgACGCGTACCTGCTACTGTCACGGGGCGGTAGCATCCACGACTTCTCACGTTGACGTCGTGAGGATCGGCGGAATCCCAGCAAACGACGAAATGAATGACGGAATTTCTGTAAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338040 331 -   386604 accttttgaatattt------tgaacgATTGACCAGAACTGGAAGTGTCAGAACTGAATGTG----GA--AGGGTT----TTAGAAGA--------GATT---CA----CCTGTT-----AAATGAACAGAATCAGATCT-AACTTACCCAGCTGAGCTCGTTTTGCGCAGAGGGCTTTTCACAATTTTATGGAAACCGCAGCCACATTTTGCAGGTCCTCTGTTATCAAACAGtttagagttttttggaaa----ttga----attcataCCTGCTACTGTCACGTGGGGGTAGCATCCATGATTTTTCCCGTTGGCGTCTCGATGAACGACGAAATCCAAGTAAACGACGGAAAGAATGACGGAATTTCTG--AAC-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1576148 327 -  4147112 accttttgaatattt------tgaacgATTGACCAGAACTGGAAGTCTCAGAACTGAA--TG----GG--AGGGTTACTATTAGAAGA--------GATT--GAA----CTTGTC-----AATT-----GTGTCACAATT-AACTTACCCAGCCGAGCTAGTTTTGCGGAGAGGGCTTTTGACAATTTTATGGAAACCGCATCCACATTTTGCAGGACCTCTGTTGGAatatagttcaaaaatttcaaataatgtttTGA-------CATACCTGCTGCTATCACGTGGAGGGAGCATCCAAGATTTCTCCCGTTGACGTCTGGAAGAACGACGGAATCCAAGCAACCGACGAAATGAATGACGAAATTTCTG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   110326 329 +   375229 ACCTTTTAAACATTTTGATTCTTAACGAGTGGCCAGAACTAGATGTTTCAGAACTGAA--CA----AT--ATAGTT----TTAAACAA--------TGTGTTATA----ATTTTT-----AG-------GAGTCAT-----CACTTACCCAGCCGAGCTTGTCTTTCGCAAAGGACTTTTCACAATTTTGTGGAACCCACACCCGCATTTAGCCGGACCCCTGTCATGAAAACAGTTA---TTTCTTGCCGA----AAGAAATGAAACCGACCTGCTACTATCTCTTGGGGGTAGCATCCATGATTTTTCCCTTTGACGGCGAGAAGATCTTCGGAATCCGAGCAAACGACGGAAGGAGTGACGGAATTTCTATAAA--
i caeJap4.Scaffold17084 I 36 C 0

a score=-4794.000000
s ce10.chrX              4331227 40 + 17718866 AAGGAGGTGTTGAATGGATTATACAGTACAGTTTTCAGTA
s cb4.chrX              12103665 12 - 21540570 --------------------------catttttttgta--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3221041 12 +  4500979 --------------------------CATTGTCTCCAA--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    338371  6 -   386604 --------------------------TTCCGT--------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       1576475  0 -  4147112 C
e caeJap4.Scaffold17084   110655  0 +   375229 C

a score=-1490.000000
s ce10.chrX              4331267 15 + 17718866 TATTTAGTTTGCTAA
s caeRem4.Crem_Contig0   3221055  1 +  4500979 ------------C--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    338377 13 -   386604 --TTTTGTTTATTGA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       1576475  0 -  4147112 C
e caeJap4.Scaffold17084   110655  0 +   375229 C
e cb4.chrX              12103677  0 - 21540570 C

a score=-2507.000000
s ce10.chrX              4331282 32 + 17718866 GCGGGTTTACTATTTCTTGTCAAATTGAGTTA---
s caeRem4.Crem_Contig0   3221056 12 +  4500979 -----------------------TTCATATTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       1576475  6 -  4147112 --------------------------GAGTTA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   110655  0 +   375229 C
e cb4.chrX              12103677  0 - 21540570 C
e caeSp111.Scaffold622    338390  0 -   386604 C

a score=0.000000
s ce10.chrX              4331314 26 + 17718866 AGCTGGCGCAATGCCTATAGAGGGAA
e caePb3.Scfld02_0       1576481  0 -  4147112 C
e caeJap4.Scaffold17084   110655  0 +   375229 C
e cb4.chrX              12103677  0 - 21540570 C
e caeSp111.Scaffold622    338390  0 -   386604 C
e caeRem4.Crem_Contig0   3221068  0 +  4500979 C

a score=-4006.000000
s ce10.chrX              4331340 62 + 17718866 TACAGACATGTCAAAATTTTGGAAAACGTTGTCGGTTTTACCTTGTCTCAATTCCATGAATT
s caeRem4.Crem_Contig0   3221068 15 +  4500979 ----------------------------TTGTGGGT--------GTCTCAA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   110655 19 +   375229 CACAGAAATATGGGAACGT-------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1576481  0 -  4147112 C
e cb4.chrX              12103677  0 - 21540570 C
e caeSp111.Scaffold622    338390  0 -   386604 C

a score=0.000000
s ce10.chrX              4331402 11 + 17718866 AATGTTTTATA
e caePb3.Scfld02_0       1576481  0 -  4147112 C
e caeJap4.Scaffold17084   110674  0 +   375229 C
e cb4.chrX              12103677  0 - 21540570 C
e caeSp111.Scaffold622    338390  0 -   386604 C
e caeRem4.Crem_Contig0   3221083  0 +  4500979 C

a score=-4087.000000
s ce10.chrX              4331413 24 + 17718866 CAACGCAAATTGAACTTGAAAAAT
s caeRem4.Crem_Contig0   3221083  4 +  4500979 -----------------GAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338390 14 -   386604 TAACGC----------TGAGAAAC
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084   110674  5 +   375229 -AAAGT------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1576481  0 -  4147112 C
e cb4.chrX              12103677  0 - 21540570 C

a score=138822.000000
s ce10.chrX              4331437 276 + 17718866 TAAAAATATAATCTTTTTCGACTAAACTTTTTTATTATATAGCCAATTATGTATTATAATTATTTCTATAATTACTATCAAATTTGATATAAAAATGCTTACTGGATTGATTGTTGAGTAAATGAAAAAGTTGAGTGACGAATTCAAATACCCCAGTGCGGTAAACCAATGGAACCAAATTTCGAGGTCCGCTGACCAAACGTTGAATATCAATTTGTAAATTTTGATCATGTTCAATGTGAAAAACGGAAGCCAGCAGACGAGAAAAACCACTGC--
s cb4.chrX              12103677 207 - 21540570 ----aatatatTATTCAACCAAAGAGTTGTTTAT-----------------------------------------------------------------TACCGGGTTGATAGTCGAGTAGatgaagaaattcaaagaagaGTTGAGGTAGCCCAGTGCCGTAAACCAATGGAACCAAATCTCCAAATCGGCAGACCACACGTTGAATATTAGCttataaattttgatcatATTCAATGTGAAGAATGGGAGCCAGCAAACTAGGAAGACCACTAA--
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   3221087 231 +  4500979 CGAAGTTAGATTCGTGTACCATCATTCTGTTTTT--------------ATGTCTT----------------TTTTCATCCAA---------------CCTACCGGGTTGATAGTTGAGTAAATGAAGAAATTTAGCGAAGAGTTCAAATATCCAAGAGCTGTAAACCAATGGAACCAAATTTCCAAATCAGCAGACCACACGTTGAATATCAACTTATAAATCTTGATCATGTTGAGAGTGAAGAAAGGAAGCCAGCAGacaagaaaaacaactga--
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    338404 178 -   386604 ---------------------------------C-----------------------------------------------------------------AACCGGGTTGATTGTAGAGTAAATAAAGAAGTTAAGAGAAGAGTTCAGATATCCGAGCGCTGTGAACCAATGGAACCAAATCTCCCAAGTAGTGTCCCACACACCAAATATGAGTTTGTAGATTTTGATCATGTTCAATGTGAAAAACGGAAGCCAGCAGACAAggaaaacaactga--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1576481 211 -  4147112 TAAAAATGTAATCAAGTTCTGATGACCAGACGCT-----------------------------------------------------------------TACGGGGTTGATTGTTGAGTAGatgaaaaagttcagagaAGAGTTCAGATATCCGAGTGCTGTGAACCAGTGGAACCAAATCTCCATATCAGTTGACCAAACATTGAATATTAGTTTATATATTTTAATCATATTGAGAGTGAAGAATGGAAGCCAGCAGACAAGAAAGacaactga--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   110679 197 +   375229 ---------------------TTAAAATGTTTGT--------------ATGAA----------------------------------------------TACCGGGTTAATAGTCgagtaaatgaaaaagttgagAGATGAATTTAAATATCCCAGAGCTGTAAACCAGTGAAACCAGATTTCGAGATCGGCGGACCAGACATTGAATATcaatttgtaaattttaaTCATGTTGAGAGTGAAGAAGGGCAGCCagcaaacaagaaaaacaactgaac
i caeJap4.Scaffold17084 C 0 C 0

a score=-4666.000000
s ce10.chrX              4331713 17 + 17718866 --AATGTATTTGGTTTAGT
s caeRem4.Crem_Contig0   3221319 16 +  4500979 --aataaattattcgcGT-
i caeRem4.Crem_Contig0  I 1 I 10
s caeSp111.Scaffold622    338582 17 -   386604 --aatatatttttatcgtt
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0       1576692 17 -  4147112 --aattttagaCTTTCCAC
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17084   110876 11 +   375229 aaaaaacatga--------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              12103884 26 - 21540570 I

a score=20353.000000
s ce10.chrX              4331730 327 + 17718866 -------------TTTAATGTCAAAGAATAGTTTCAGTTACCCATTACAGTTGCAACCAACTTGGTTGCACGAGTCTCTCGACGAATCGCCATTCCCTGCTTGGATTTCAGTTTTGCTAACAGGTCCAGCGCCCAGTCCT---GGAAAATCGGACAGTTGAAGAAAATTCGGTAATTTTATTTTGGTATAGTTCCAATATTTTCCGTTTTTTTCTTGTTT----TTTTTTAGATTC------------CGGATGTTTCAAAGGATATGGAAAATTTTTATGAAAATTTAGCGTTGAGTTACCAAAAGTGGCTGAAACATGCGTATTTTGCAGGTAATTCAAATTTCAATGTCTTTCTTT
s cb4.chrX              12103910 181 - 21540570 -------------ttcatttcT--------------GATACCCATGACTGTAGCCACAAGTTTGGTTGCTCTTGTCTCCCTCCGAATAGCCATTCCTTGTTTTGATTTCAGTTTTGCTAGTAGGTCAAGTGCCCAGTCCT---aaacaa---------------------------------------------------------atcattttttgtct----ttttcaaaattg-------------------------------tttaaattacttt-------tagccctg-------------------------------------------------ccaacttttttCGTG
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   3221345 207 +  4500979 -------------TTTATTGTT--------------AATACCCATGACAGTTGCCACTAGTTTTGTTGCTCGTGTCTCCCGTCGAATAGCCATTCCTTGTTTGGACTTTAGTTTTGCTAGTAAGTCCAATGCCCAATCCT---AAAACA---------------------------------------------------------AACTACTTTTGTCTG---TGTTCAAAA-----------------------------------ACCAATTGCTAT-------TCGCTATGA--TGGTAAAATAGAGTACAG------------------GcttcgttttttcactttcatagTG
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold622    338610 177 -   386604 -------------ttcattttt---------------gtacCCATGACAGTTGCTACTAATTTTGTTGCTCGTGTTTCTCTTCGAATAGCCATTCCTTGTTTAGATTTCAATTTAGCCAGTAAATCCAGTGCCCAGTCCTTTaaaagaa---------------------------------------------------------tgattttt----------ttttccagaaag----------------------------------aaaTTATTAC----------TTTTAA--TCC-----------------------------------------AGCCAATTTCTTCCTTG
i caeSp111.Scaffold622  I 11 C 0
s caePb3.Scfld02_0       1576720 246 -  4147112 -------------ATTATTCTC-------------AAATACCCATGACAGTTGCCACCAATTTGGTTGctcttgtttctcttctgATGGCCATTCCTTGCTTCGACTTTAGCTTTGCAAGTAAGTCCAGTGCCCAATcct---aaacat---------------------------------------------------------ttccttttttgtttattattcTCAAGAAGGGGAGACTAGAAACTAGTGTTGC-------ACGGCAAGTTATTATGTGAACGCGGTTTGAA--AACGAAgatagattttca------------------aaaaaaaaaaacaatagcaCTCCTG
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17084   110887 146 +   375229 aacgtcaaaTAACATTAATGTT----TATGTGTATGTATACCCATAACAGTTGCCACAAGCTTAGTTGCTCGTGTCTCTCTTCTAATAGCCATTCCTTGTTTAGACTTT-------------------------AATTTT---GCCAAC---------------------------------------------------------------------------AAATCGAGAGCC---------------------------CAGTCctgaatttcttt-------------------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-18841.000000
s ce10.chrX              4332057 66 + 17718866 G----AATATTCTACGTATTTTCAATCTGGATATAACAAAAAATATTTAAAATCATACTTGAGCTAATCT
s cb4.chrX              12104091  8 - 21540570 C----AATG---TAT-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3221552 23 +  4500979 CCCGTAATG---TATTTTATGTCATA--------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338787 48 -   386604 C----AATG---TAGacactttctctt---cttgcGTACAGA-T--------ACATATTGCTGATAG---
i caeSp111.Scaffold622  C 0 I 21
s caePb3.Scfld02_0       1576966 54 -  4147112 -----AATT---TCGatattaattttcagacttcaatGCAAAGT--------TAGTAtttcaactaattt
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17084   111033  0 +   375229 C

a score=0.000000
s ce10.chrX              4332123 32 + 17718866 AAATTGAACCATGAACATTCTAGAACAACAAC
e caePb3.Scfld02_0       1577020 34 -  4147112 I
e caeJap4.Scaffold17084   111033  0 +   375229 C
e cb4.chrX              12104099  0 - 21540570 C
e caeSp111.Scaffold622    338835 21 -   386604 I
e caeRem4.Crem_Contig0   3221575  0 +  4500979 C

a score=273.000000
s ce10.chrX              4332155 11 + 17718866 AAGTATGAATC
s caePb3.Scfld02_0       1577054 11 -  4147112 GAGTATTTCTC
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold17084   111033  0 +   375229 C
e cb4.chrX              12104099  0 - 21540570 C
e caeSp111.Scaffold622    338835 21 -   386604 I
e caeRem4.Crem_Contig0   3221575  0 +  4500979 C

a score=-4953.000000
s ce10.chrX              4332166 40 + 17718866 TTTTTTAAATTTTTTTAAACAGTTTTGT----ATTAAAAACGGA
s caeSp111.Scaffold622    338856 10 -   386604 --------------------------------Agtcagaaat--
i caeSp111.Scaffold622  I 21 C 0
s caePb3.Scfld02_0       1577065 43 -  4147112 CTCCTTGACTTTCCGTGCA-ACCTTTGCTTGTACTTAAAACTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   111033 30 +   375229 -ttttttagtgtttttgaa-------------aaaaaaaatggg
i caeJap4.Scaffold17084 C 0 I 17
e cb4.chrX              12104099  0 - 21540570 C
e caeRem4.Crem_Contig0   3221575  0 +  4500979 C

a score=-7249.000000
s ce10.chrX              4332206 45 + 17718866 TTATTTTCAGTCTTTATAGTGTGTTTGTTTTTAAAGCTCAAATTA
s caeRem4.Crem_Contig0   3221575 19 +  4500979 -----------TCAAATCGTGTGTTCG---------------TTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338866 17 -   386604 -------catttctgat---------------------AAACGTc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1577108 42 -  4147112 TCA-TCACATTACTCATTATGCTTTCAAATCT--GTTAAAAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   111063 17 +   375229 I
e cb4.chrX              12104099  0 - 21540570 C

a score=63152.000000
s ce10.chrX              4332251 151 + 17718866 TTACTTTCAGACCGGCCAACTTCTTCCTTGCAATGTAGACGCTTTCTCTTCTCGCATAAAGATACATGTTACTGATCGAACTTCTTGACGGTCGTTCCCAATCAGATATCATCTCGGATAAACGTCTCATCTTTCGCTTTTCAACCTGAAA
s cb4.chrX              12104099 113 - 21540570 ACACTTTC--------------TCTCCTTGC---GTA---------------------TAAGTACATATTACTAATGGAACTTCTCGACGGTCGCTCCCAATCCGATATCATCTCGGACAACCTCCGcatctttctcttttcaacctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3221594 151 +  4500979 TTACTTTCAAGCCTGCCAATTTTTTCCTGGCAATGTAGACACTTTCTCTTCTCGCATATAGATACATATTGCTGATAGAACTTCTAGATGGTCGCTCCCAATCCGAAATCATCTCGGACAATCTTCTCATCTTCCTTTTCTCAACCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338883  32 -   386604 tcattttccgt--------ttctccACCTGGAAt-------------------------------------------------------------------------accatt--------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1577150 151 -  4147112 TTACTTTCAGTCCAGCTAGTTTTTTCCTTGCAATGTAGACGCTCTCTCTTCTTGCATACAGGTACATGTTGCTGATTGAGCTTCTAGAAGGACGCTCCCAATCAGAAATCATCTCTGACAAACGtctcatcttcctcttctctacctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   111080 151 +   375229 TGACTTTTAGACCAGCTAATTTCTTCCTAGCAATGTAGACACTTTCTCTTCTAGCGTACAAGTACATATTGCTGATTGAACTTCTTGACGGACGCTCCCAATCAGAAATCATTTCCGACAAACGTCTCATTTTTCGTTTCTCAACCTGAAA
i caeJap4.Scaffold17084 I 17 I 19

a score=-360.000000
s ce10.chrX              4332402 4 + 17718866 AAAA
s cb4.chrX              12104212 4 - 21540570 aaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3221745 4 +  4500979 TCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       1577301 4 -  4147112 tcac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   111231 19 +   375229 I
e caeSp111.Scaffold622    338915 0 -   386604 C

a score=168268.000000
s ce10.chrX              4332406 571 + 17718866  
s cb4.chrX              12104216 563 - 21540570  
i cb4.chrX              C 0 T 8517
s caeRem4.Crem_Contig0   3221749 557 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338915 554 -   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1577305 574 -  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   111250 645 +   375229  
i caeJap4.Scaffold17084 I 19 C 0

a score=1023.000000
s ce10.chrX              4332977 5 + 17718866 CAGAA
s caeRem4.Crem_Contig0   3222306 5 +  4500979 TATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    339469 5 -   386604 gaaaa
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0       1577879 5 -  4147112 TAGAA
i caePb3.Scfld02_0      C 0 T 8870
s caeJap4.Scaffold17084   111895 5 +   375229 catGA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              12104779 8517 - 21540570 T

a score=1535.000000
s ce10.chrX              4332982 13 + 17718866 GAGAA--CATGCATT
s caeRem4.Crem_Contig0   3222311 13 +  4500979 AAGAT--CATGCATT
i caeRem4.Crem_Contig0  C 0 T 7679
s caeSp111.Scaffold622    339478 15 -   386604 aaaattacatGCAAT
i caeSp111.Scaffold622  I 4 C 0
s caeJap4.Scaffold17084   111900 11 +   375229 CAAAT--CATGCA--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1577884 8870 -  4147112 T
e cb4.chrX              12104779 8517 - 21540570 T

a score=1339.000000
s ce10.chrX              4332995 14 + 17718866 ATCTCATAGACTAT
s caeSp111.Scaffold622    339493 13 -   386604 -TTTCATAGAATAT
i caeSp111.Scaffold622  C 0 T 7214
s caeJap4.Scaffold17084   111911 14 +   375229 ATTTCATCAATTCA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1577884 8870 -  4147112 T
e cb4.chrX              12104779 8517 - 21540570 T
e caeRem4.Crem_Contig0   3222324 7679 +  4500979 T

a score=404.000000
s ce10.chrX              4333009 11 + 17718866 TTGTGAGTTTT
s caeJap4.Scaffold17084   111925 11 +   375229 Tgttgaggttt
i caeJap4.Scaffold17084 C 0 T 9514
e caePb3.Scfld02_0       1577884 8870 -  4147112 T
e cb4.chrX              12104779 8517 - 21540570 T
e caeSp111.Scaffold622    339506 7214 -   386604 T
e caeRem4.Crem_Contig0   3222324 7679 +  4500979 T

a score=0.000000
s ce10.chrX              4333020 187 + 17718866 GCGGACAAAGAGTTAGGAACTCGGCAATTTTTACAGCAAAGGGATGTGCGGCATCCGTTTCGACAGTATAGTAATATATAAGTTTTCCAGAAGGTAAATTTGAAAACTATTATATCAGGTAAACAGATTAGGATATTAGCTAGGCTTTTAAATTATAAAAACCAAAACAAAGTGTTGAGATAGTGGA
e caePb3.Scfld02_0       1577884 8870 -  4147112 T
e caeJap4.Scaffold17084   111936 9514 +   375229 T
e cb4.chrX              12104779 8517 - 21540570 T
e caeSp111.Scaffold622    339506 7214 -   386604 T
e caeRem4.Crem_Contig0   3222324 7679 +  4500979 T

a score=2386.000000
s ce10.chrX              4333207 3 + 17718866 TGA
s cb4.chrX              12096262 3 - 21540570 tgg
i cb4.chrX              T 8517 C 0
s caeRem4.Crem_Contig0   3214645 3 +  4500979 TGG
i caeRem4.Crem_Contig0  T 7679 C 0
s caeSp111.Scaffold622    332292 3 -   386604 TGG
i caeSp111.Scaffold622  T 7214 C 0
s caePb3.Scfld02_0       1569014 3 -  4147112 TGG
i caePb3.Scfld02_0      T 8870 C 0
e caeJap4.Scaffold17084   111936 9514 +   375229 T

a score=116222.000000
s ce10.chrX              4333210 246 + 17718866 AAGTTTGGACCGGTTCC---ATCTTGAGCAAACGGTTGGTTTTTTGAAGGGTCTGAAGCGCTTGCGGTGTGACCCGGTGGTTGAACGCGCGGTGAGTTGCCATTTTTCGACGAGCCTGGAACTAT----------------------------------------------------------------------------------------ATCGGTGA----------------ATGCA----ATTTAACGCTCATGAAAAAACGAACTATATGCCGATTTAGGAATTTCTCCACCAATTCTCAAGCTTTCCATTTGACTTCGAAGACTTTGAGCAGTGACATAGTTGTCTGAA
s cb4.chrX              12096265 245 - 21540570 aaatttggtcCCGTTCC---CTCTTCAGCAAAAGGTGGATTATTGGATGGATCACAAGCACTAGCAGTGTGGCCCGGAGGCTGAACTCGTGGCGATCCATTGTTTCGAGAAGAACCTGCAA-------------------------------------------------------------ACAAAAG------------------------ATCTG--------------ATT--TTGAA----CTCCAAACG----GAATAGGTGTACCATAAgcagattttggaatttctcctccaattttcaaactttccatCTGGCTTCGAAGACTTTGCGCCGTCACATAGTTATCTGAA
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   3214648 340 +  4500979 AAGTTGGGACCTGTTCC---GTCTTGTGGAAATGGTTTATTTTTAGAAGGATCCGAAGCACTAGCTGTGTGACCTGGTGGTTGAACTCGTGGTTGTCCACCATTTTTGGATGAGCCTGAAAAGATAACAGTAAAACTcttcatctgtttttttccgCTTTGT------GAGTCattatt-caacaaaaacaatattcgattgtttttgtttatatttgaaa----ac-agctatt--tcgaaatttctcgaaaagagaaaaaaagactcaCTATATGCAGACTTTGGAATTTCTCCTCCGATTCTCAAGCTTTCCATCTGGCTTCGTAGACTTTGAGCAGTCACATAGTTATCTGAA
i caeRem4.Crem_Contig0  C 0 I 498
s caeSp111.Scaffold622    332295 316 -   386604 AAATTTGGACCTGTCCC---ATCTTGACCGAactgttgattttttgatggatcTGATGCACTCGCAGTATGTCCCGGTGGTTGAACTCGTGGTGACGCCCCATTCCGTGACGAACCTGACAAGATAATA---------TTTATAGATTTCGCTCTGCTATGAACCATGAAATCATAATA--AACTAAAACGTGAC------------------ATAAGTCAACTGACTGGCCATTCTCCGAA----TATaaacattga-----aaactcaCCATATGcagattttggaatttctccTCCAATCCTCAAGCTTTCCATTTGACTTCGAAGACTTTGAGCAGTCACATAATTGtctaaa
i caeSp111.Scaffold622  C 0 I 568
s caePb3.Scfld02_0       1569017 290 -  4147112 AAGTTTGGACCCGTGCC---CTCTTGTGGGAATGGCTGATTCTTGGATGGGTCAGATGCACTGGCAGTGTGTCCCGGTGGTTGAACTCTCGGGGATCCATTATTCCTTGAtgatcctggaaaaaaagca--------------aactttC---------TGA---ATATATTCATCATATCAGTTAACA------------------------ATGAGTCA----TCAAGCCgtt------a----tttaaaaattgaagacgaaACTCACCATATGCAGATTTCGGAATCTCTCCTCCAATCCTCAAACTTTCCATTTGACTTCGAAGGCTTTGAGCAGTGACATAGttgtctgaa
i caePb3.Scfld02_0      C 0 I 61
s caeJap4.Scaffold17084   102422 247 +   375229 AAATTAGGCCCTGTTCCTCGATCTTGTGGGAAATTTTGGTTCGGGGCGTTTTCTGAGGCATTAGTGGTTCGTCCTGGCGGTGGAACGTTTGACGATCCGCCGTTTCGTGATGAACCTGGAACAAAATTC------------------------------------------------------------------------------------ACAGTTCA-----------ATG--TTAGA----TATTTTCCTTG---------CTTACCATATGCTGATTTTGGAATTTCTCCACCAATACGTAGACTTTCCATTTGACTTCGCAGGCTTTGGGCGGTCACGTAATTGTCTGAA
i caeJap4.Scaffold17084 T 9514 C 0

a score=-7347.000000
s ce10.chrX              4333456 24 + 17718866 ATTGT----------------------------------GAGT---------TCTATTTCACTAGGT
s cb4.chrX              12096536 30 - 21540570 ATTTT-----------------------------------AGT--TGCTTCTCCTTCTTGCTTATTT
i cb4.chrX              I 26 C 0
s caePb3.Scfld02_0       1569368 65 -  4147112 atttttttcaatagtag--TAGCAGTAGGAAGGTTTTCTGAGTGATACTACTTCCTTCTGATTGATT
i caePb3.Scfld02_0      I 61 C 0
s caeJap4.Scaffold17084   102669 51 +   375229 ----------AAAGTAGAATGGTTGTTTGTTGCTTTTCTGAGA--AATTGTATCTTTTTAGTT----
i caeJap4.Scaffold17084 C 0 I 188
e caeSp111.Scaffold622    332611 568 -   386604 I
e caeRem4.Crem_Contig0   3214988 498 +  4500979 I

a score=-9219.000000
s ce10.chrX              4333480  68 + 17718866 A-----------------------ATTTTGTAATTTC---------------TCCCTGTGTCCTGCTTCACG-----TTACTACTAAATATC---------------------------------------GAGCTACA---------------A--------------------------AGTAGTGCAA
s cb4.chrX              12096566 146 - 21540570 ATGCG-------------------ACAtgtcaatttc------caaaaaagctCCACATTTTCGGGTCTCCAAGGCTTCACTCCTAAGCAGCCTCCGCCTATACActc-----ttctcttccttttcttttgaaacaca---------------aaatcAATGCACCTGCGCTTCTAACCTAATAATGCAA
i cb4.chrX              C 0 I 113
s caePb3.Scfld02_0       1569433 180 -  4147112 ACGCTGCACCTGtttttttGGCTCAGTAATTACTTTCTGTACATGCAAAAGCCGGTTATGCTCGTGTTTCCATACATATGAGATTAAATATC--------AGAGACTCATGAGTTCTATTTTGGTTCTCACAGAACATATACTCTTCTGACTAGAAAACACTCAAAATGTAGTTCTAG---AATACTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   102720 188 +   375229 I
e caeSp111.Scaffold622    332611 568 -   386604 I
e caeRem4.Crem_Contig0   3214988 498 +  4500979 I

a score=-8405.000000
s ce10.chrX              4333548  50 + 17718866 -----ATTAGG--TGCGTGAGT-------TTTGCACTTTC---------------------------------------C------------------------------------------CACGACACATATGATCAA----------------------------------ATTAC
s cb4.chrX              12096825 140 - 21540570 -----atttga--aacgtcatt-------tttgtatcttc--------------gcttcccgtttacactcttttttatc------ttttccaCTGCTTTGCGTAAAGAAAAATTCCTTT--AATAAGAAATATGATTtc-ctttccctttttttcactCAGATTTCTACGT--GTTTC
i cb4.chrX              I 113 C 0
s caePb3.Scfld02_0       1569613 174 -  4147112 ATGTAGTCCGATTGACGTTAGTCAAAGCCTCTAAATCCTCTTCTGATAGTCAGAGTCACATGTTAGAAGTCGATTTCCtccattatttttcga-----tttcgtaATCACATTCTCTTTTGAAATGAGGCATATGTGAacacattcttttttgtttattgaaatTCCCATCTCGATTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   102720 188 +   375229 I
e caeSp111.Scaffold622    332611 568 -   386604 I
e caeRem4.Crem_Contig0   3214988 498 +  4500979 I

a score=585.000000
s ce10.chrX              4333598 18 + 17718866 ATATT------CAAAACTATCATA
s cb4.chrX              12096965 24 - 21540570 TTATTTATTGCTTAAATTCGTATA
i cb4.chrX              C 0 I 6
s caePb3.Scfld02_0       1569787 19 -  4147112 TTATTT-----CTAAACCAACACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   102908 18 +   375229 TCatt------taaaattagaaaa
i caeJap4.Scaffold17084 I 188 C 0
e caeSp111.Scaffold622    332611 568 -   386604 I
e caeRem4.Crem_Contig0   3214988 498 +  4500979 I

a score=-264.000000
s ce10.chrX              4333616 2 + 17718866 AT
s cb4.chrX              12096995 2 - 21540570 AT
i cb4.chrX              I 6 I 5
s caeRem4.Crem_Contig0   3215486 2 +  4500979 AT
i caeRem4.Crem_Contig0  I 498 C 0
s caePb3.Scfld02_0       1569806 1 -  4147112 A-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   102926 2 +   375229 at
i caeJap4.Scaffold17084 C 0 I 14
e caeSp111.Scaffold622    332611 568 -   386604 I

a score=59977.000000
s ce10.chrX              4333618 124 + 17718866 ACCTTTGTGTTGAACTAACGTAGACTCTCCACCGTCAATCATAGTGGACATTCCCTCGCTTAGCAACGTTGCATCATTTCCGCTGCTTGCTGCCTGAAAAAACAATCAAAT-----TTTCGTTTTCTAA----
s cb4.chrX              12097002 117 - 21540570 ACCTTTATACTGCACGAGAGTCGCATCTCCACCGTCGATCATCGTTGACATTCCTTCGCTTAGTAACGTGGCATCCGCTCCGGCG---ACTGCCTGAAA----Tgcgaaaa-----attaggttttatG----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   3215488 113 +  4500979 ACCTTTGTGTTGGACCAGTGTTGCATCCCCTCCGTCAATCATCGTCGACATTCCTTCACTTAGCAACGTGGCATCAGGTCCACTG---GCTGTCTAGAA--------ATAT-----TTTACATAAAAAG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    333179 122 -   386604 ACCTTTGTGCTGAATTAGAGTCGCATCTCCGCCGTCAATCATCGTAGACATTCCTTCGCTAAGCAACGTGGCATCTCCTCCACTA---GCGACCtgaag----tttttcttattcctCCGTTTCTATTT----
i caeSp111.Scaffold622  I 568 C 0
s caePb3.Scfld02_0       1569807 117 -  4147112 ACCTTTGTGTTGGACTAAAGTCGCATCTCCGCCGTCAATCATCGTAGACATCCCTTCGCTTAGTAACGTGGAATCGCCTCCGCTC---ACGgcctgaat----tttcattt-----tctatatgACTTT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   102942 122 +   375229 ACCTTTATGCTGTATCAATGTTGCTTCTCCTCCGTCAATCATTGTCGACAAACCCTCGCTACAGATTGTGGCGTCGTTTGCGTTT---GCAGTCtgaaa----aattatcaa----tttaaaTCTTTTCCTAA
i caeJap4.Scaffold17084 I 14 I 754

a score=69703.000000
s ce10.chrX              4333742 110 + 17718866 TGAAATTTTTTGTC------AACCATTGGTGCTTGTCCTAGTATAGCTTTTTCTTGAGCATCCTGGATCATCAACTGCATAATATCGCAACCTGGTGCATTTTTGATGAATGTGTG
s cb4.chrX              12097119 112 - 21540570 TTCCTTTTCGCTTC----TTTACCACAGGAGCTTGTCCGAGCAGCACTTTTTCTTGGGCATCTAATATCATCGCTTGCAACACATCACATCCTGGTGCGTTCTCAATAAACGTGTG
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   3215601 116 +  4500979 CTTCTTTTTGCTTTCATACTGACCAGAGGGACTTGTCCAAGTGCTGCTTTTTCCTGTGCATCTTGAATCATTGATTGTAGAATGTCACACCCTGGCGCGTTTTCTATGAAGGTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    333301 109 -   386604 CAACATTTTATGTT-------ACCATTGGTGCTTGTCCTAACGCTGCTTTCTCTTGAGCGTCTTGAATCATTGATTGTAAAATGTCACATCCGGGAGCATTTTCAATGAACGTATG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1569924 114 -  4147112 CACTCTTTCATGTT--TCCTAACCATAGGTGCCTGTCCAAGTGCTGCTTTCTCTTGTGCGTCTTGAATCATTGATTGCAATATATCACATCCAGGagcattttcaatgaaagGATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   103818 102 +   375229 -------TTAAATT-------ACCGGTGGGATTTGCCCCAATGCTGCTTTTTCCTGTGCGTCTTGAATCATCGCTTGAAGAACTTCAGATTCAGGAGCGTTTTCGATAAACTTGTG
i caeJap4.Scaffold17084 I 754 C 0

a score=5152.000000
s ce10.chrX              4333852 6 + 17718866 CTGAAA
s caeRem4.Crem_Contig0   3215717 6 +  4500979 CTGAAA
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold622    333410 6 -   386604 CTGGAA
i caeSp111.Scaffold622  C 0 I 36
s caePb3.Scfld02_0       1570038 6 -  4147112 CTGAAA
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17084   103920 6 +   375229 CTGAAA
i caeJap4.Scaffold17084 C 0 I 7
e cb4.chrX              12097231 6 - 21540570 I

a score=0.000000
s ce10.chrX              4333858 14 + 17718866 AATATCTATGAAGT
e caePb3.Scfld02_0       1570044 42 -  4147112 I
e caeJap4.Scaffold17084   103926  7 +   375229 I
e cb4.chrX              12097231  6 - 21540570 I
e caeSp111.Scaffold622    333416 36 -   386604 I
e caeRem4.Crem_Contig0   3215723 38 +  4500979 I

a score=-2866.000000
s ce10.chrX              4333872 832 + 17718866  
s cb4.chrX              12097237 651 - 21540570  
i cb4.chrX              I 6 C 0
e caePb3.Scfld02_0       1570044  42 -  4147112 I
e caeJap4.Scaffold17084   103926   7 +   375229 I
e caeSp111.Scaffold622    333416  36 -   386604 I
e caeRem4.Crem_Contig0   3215723  38 +  4500979 I

a score=-1534.000000
s ce10.chrX              4334704 31 + 17718866 -TTGGG----AAATTT--------------CTTTTTTTTTAAGCCATACG---
s cb4.chrX              12097888 49 - 21540570 -CTGAGTATAAAGTTTACGATCTGGGCACGCTTCTATTAAAAGAAATACG---
i cb4.chrX              C 0 I 2
s caeJap4.Scaffold17084   103933 31 +   375229 TTTGAT----AA------------------CTTCTATTTTATTAAATCCTGCT
i caeJap4.Scaffold17084 I 7 C 0
e caePb3.Scfld02_0       1570044 42 -  4147112 I
e caeSp111.Scaffold622    333416 36 -   386604 I
e caeRem4.Crem_Contig0   3215723 38 +  4500979 I

a score=29.000000
s ce10.chrX              4334735 1 + 17718866 T
s caeSp111.Scaffold622    333452 1 -   386604 t
i caeSp111.Scaffold622  I 36 C 0
s caeJap4.Scaffold17084   103964 1 +   375229 C
i caeJap4.Scaffold17084 C 0 I 2
e caePb3.Scfld02_0       1570044 42 -  4147112 I
e cb4.chrX              12097937 2 - 21540570 I
e caeRem4.Crem_Contig0   3215723 38 +  4500979 I

a score=1600.000000
s ce10.chrX              4334736 2 + 17718866 AC
s cb4.chrX              12097939 2 - 21540570 GT
i cb4.chrX              I 2 T 710
s caeRem4.Crem_Contig0   3215761 2 +  4500979 AC
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622    333453 2 -   386604 ac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1570086 2 -  4147112 AC
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold17084   103967 2 +   375229 AC
i caeJap4.Scaffold17084 I 2 C 0

a score=296627.000000
s ce10.chrX              4334738 307 + 17718866 CTCACACAATCGGAGTGCCGTTTTTCTTTCTTCTGGCTTTTTAATTAAACAGCTTCTTATGAAATCATTGAACTCGGACGACCATTCTTCAGGTTTTTTAAACGTAGGTGGTGGTTTAGTTGGAATCATGAAGATTGCTCGCATCGGATGAATATCTGAATAAGGAGGCCGTCCCTCTGCCATTTCGATAGCTGTTATTCCCAGTGACCATATATCAGCTTTTGTGTCATATCCGATTTCTTCGATAACTTCAGGGGCCATCCAGAATGGCGTTCCAATGACTGTATTTCTTTTTGCCATTGTATCA
s cb4.chrX              12097231 307 - 21540570 CTCACAGAGCCGAAGTGCTGTCTTCCTTTCTTCAGGCTTCTTAATAAGACAACATCTAATGAAATCGTTGAATTCTGATGACCACTCTTCTGGTTTTTTAAATGTCGGCGGTGGCTTTGTAGGGATCATAAAAATTGCACGCATTGGATGAATGTCCGAGTATGGAGGACGTCCTTCAGCCATCTCAATTGCTGTTATTCCAAGTGACCAGATGTCAGCTTTCGTGTCATAACCAATCTCCTCGATCACTTCAGGCGCCATCCAGAACGGTGTTCCTATTACTGTATTTCTTTTTGCCATTGTGTCA
i cb4.chrX              T 710 C 0
s caeRem4.Crem_Contig0   3215763 307 +  4500979 CTCGCACAGCCTGAGAGCTGTTTTCCGTTCCTCCGGTTTTTTAATTAAACAACATCTTATAAAGTCATTGAATTCTGCAGACCattcttctggttttttgaatgtcGGCGGAGGCTTTGTAGGGATCATGAAAATTGCACGCATCGGATGAATGTCAGAATACGGAGGACGTCCTTCTGCCATCTCAATTGCCGTTATTCCTAATGACCATATATCCGCTTTTGTGTCGTAACCGATTTCTTCAATGACTTCTGGTGCCATCCAGAAAGGAGTTCCAATAACTGTGTTTCTTTTTGCCATTGTATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    333455 307 -   386604 CTCGCATAACCTGAGAGcagttttcctttcttctggTTTCTTGATCAAACAGCATCTGATGAAATCATTGAACTCAGAAGACCattcttctggttttttgaatgttggCGGTGGTTTTGTAGGAATCATGAAAATAGCACGCATCGGATGAATATCCGAGTATGGAGGACGTCCTTCGGCCATTTCGATAGCTGTAATTCCTAGTGACCAGATATCTGCTTTCGTATCGTatccaatttcttcaatCACTTCTGGAGCCATCCAAAATGGAGTTCCAATCACAGTGTTCCTTTTTGCCATTGTGTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1570088 307 -  4147112 CTCGCATAGCCGGAGCGCAGTCTTTCTTTCGTCCGGTTTTTTGATTAGACAACATCTGataaaatcattgaattctgCTGACCATTCTTCTGGCTTCTTGAATGTTGGAGGTGGTTTTGTAGGGATCATGAAAATGGCACGCATTGGATGGATGTCAGAATATGGAGGACGTCCTTCTGCCATTTCAATCGCAGTGATTCCAAGCGACCAAATATCAGCCTTAGTATCGTATCCGATCTCTTCAATAACCTCCGGTGCCATCCAAAATGGAGTACCAATAACTGTATTTCTTTTGGCCATAGTATCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   103969 307 +   375229 CTCGCAAAGTTTCAAAGCAGTCTTCCGCTCGTCTGGTTTCTTGATAAGACAACTTCGAATAAAATCGTTAAAGTCTGCGGACCATTCCTCGGGTTTTTTGAAAGACGGTGGTGGCTTCGTCGGTATCATAAAGATTGCTCTCATCGGATGAATATCTGAATACGGTGGACGTCCCTCTGCCATCTCAATTGCGGTAATTCCCAATGACCAAATGTCGGCTTTGGTGTCATAGCCGATTTCTTCGATAACTTCCGGCGCCATCCAGAAGGGTGTTCCAATTACGGTGTTCCTTTTTGCCATTGTGTCC
i caeJap4.Scaffold17084 C 0 I 228

a score=53050.000000
s ce10.chrX              4335045 112 + 17718866 GTCAACTGTCCAGCGACACCGAAATCCGCAAGCTTTGCAATTCCATCGGTATTGAGTAGAATGTTTCCAGCCTGAA-----AATAC----AGTTT-TTTTTTCAAAAAAAAACAG-------TTTCTAA
s cb4.chrX              12097538 114 - 21540570 GTGAGCTGGCCAGCAACTCCGAAATCAGCCAATTTGGCGATTCCATCAGTGTTCAGGAGGATGTTGCCTGCCtgt------aaaaatatgaatt--ttaattttgaaatattcgg-------tTTTTAA
i cb4.chrX              C 0 I 612
s caeRem4.Crem_Contig0   3216070 115 +  4500979 GTAAGTTGTCCAGCTACTCCAAAATCAGCTAACTTTGCTATTCCATCGGTATTCAGAAGAATATTTCCGGCCTGT------AACTCAAGGTATTA-TTAATTTAGAGAATTATTG-------TTTATTG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    333762 113 -   386604 GTCAACTGTCCTGCGACACCGAAATCTGCCAGTTTAGCTATTCCATCAGTATTGAGAAGAATGTTTCCTGCCTGAAATACTAACAGTAACAATCA-TCAGCTGATCA---------------TTTCTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1570395 119 -  4147112 GTAAGCTGTCCAGCAACACCAAAATCTGCTAGTTTTGCTATTCCGTCGGTGTTCAGAAGAATATTTCCTGCCTGTA-----AGCATTGATAACTAGTCATTTTACCGAAGATCCATT-----TTTCTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   104504 116 +   375229 GTCAGCTGGCCAGCAACTCCAAAATCGGCAAGTTTTGCAATTCCATCGGTGTTCAAAAGGATGTTTCCAgcctaaa-----aattt----tatt--tcaactTTGTAACATTATGCCAAAAGTTTCA--
i caeJap4.Scaffold17084 I 228 C 0

a score=157246.000000
s ce10.chrX              4335157 159 + 17718866 CCTTTATATCTCTATGAATCTTCTTCAAGTCATGCAAATATTGCAATCCCTTGAGAGTATCGCGCAAAACTGCACTGATTTCTTGTTCGGATAACGGTTTCCGCCTGGCACGCATTATATCGGAGATCGACCCAGCTCCACAGTATTCCATCACAATCT
s cb4.chrX              12098264 159 - 21540570 CCTTAATATCTCTATGAATCTTCTTCAAGTCATGCAGGTACTGTAATCCTTTAAGCGTATCCCGTAGAACTGCACTTATTTCTTTTTCCGACAAAGGTTTCCTCCTGGCTCTCATAATGTCTGATATGGATCCGGCGCCACAGTACTCCATaacgatct
i cb4.chrX              I 612 C 0
s caeRem4.Crem_Contig0   3216188 159 +  4500979 CCTTAATATCTCTATGAATCTTCTTCAAATCGTGCAAATACTGTAATCCTTTGAGTGTGTCACGTAAAACGGCACTTATTTCCATTTCGGATAAAGGTTTCCTCCTGGCACGCATAATATCAGAGATCGAACCTGCTCCACAATACTCCATcacgatct
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    333875 159 -   386604 CCTTGATATCTCTGTGAATCTTCTTCAAATCGTGCAAATATTGCAAGCCCTTGAGTGTATCTCGCAACACCGCACTGATTTCTCGTTCTGACAGAGGTTTCCGTCTGGCACGCATAATGTCAGAGATCGAGCCTGCTCCACAGTATTCCATCACAATCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1570514 159 -  4147112 CCTTGATATCTCTATGAATCTTCTTCAGGTCGTGCAAATATTGCAGGCCCTTGAGTGTATCACGCAGAACCGCACTTATTTCTCGCTCTGACAAGGGTTTCCTCCTGGCACGCATAATGTCAGAGATTGATCCAGCTCCGCAATATTCCATCACAATCT
i caePb3.Scfld02_0      C 0 I 888
s caeJap4.Scaffold17084   104620 159 +   375229 CTTTAATATCTCTATGGATCTTCTTCAAGTCGTGCAAATATTGTAAACCCTTCAGCGTGTCACGTAGCACGGCGCTAATTTCTAGTTCTGAGAGTGGTTTTCGGCGAGCGCGCATTATATCAGAGATGGAGCCAGCTCCGCAATATTCCATCACTATCT
i caeJap4.Scaffold17084 C 0 C 0

a score=194.000000
s ce10.chrX              4335316 3 + 17718866 TTA
s cb4.chrX              12098423 3 - 21540570 gaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3216347 3 +  4500979 gaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084   104779 3 +   375229 GTA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1570673 888 -  4147112 I
e caeSp111.Scaffold622    334034 0 -   386604 C

a score=-22460.000000
s ce10.chrX              4335319 187 + 17718866 AATTA---GTTTTTTTGTTAGTCCAGTTTTCTTCTTGATTTTCGACTAGGGGTAGGGAATAAAATCTTTGAATTTCAATTGGCATGCATTTGAATGAATACTTTTGAATGTTA-----TTTCCACTTTAAGCTACATTTTTTTCTGTGGAAAAATCAGAACTTTAC----------------TGTTTTTAACTCTAATTCACAAAACGAAT
s cb4.chrX              12098426  66 - 21540570 aattc---aaactttcgtTGTTTGGGTTT-----------------------------------TTGATTACTT------------------------------------TTA-----ATTCCATTTT------------------------ATGTAGC---------------------GTTCTCTtcg---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3216350 157 +  4500979 aattcttttagatttaattttttagttttact-------------------------aGCAAAATCTGTTACGTGC-------------TCAAATGACTAA--------ATTATCCACACTCTGTTTT--------TCTTATCCTGTAAAACACGTAGTAGGCTAACTCAAACTTTGTTGGATCTTTTAGACAtgcactcaaaaaaattgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    334034  45 -   386604 --------GTGTTTTCATCATTGAGAATC-----------------------------------TCT-------------------------------------------TTA-----CTTctgattt------------------------------------------------------tctattca---------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       1570673 888 -  4147112 I
e caeJap4.Scaffold17084   104782   0 +   375229 C

a score=-10705.000000
s ce10.chrX              4335506 53 + 17718866 ATAATTTTTGTTCAATT---TCTTTTATTTAGTCCCACTTGGGCACAGCATTAAAA
s cb4.chrX              12098492 26 - 21540570 ---------tttcaagt---ttttttc------------------aaactttgtga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3216507 38 +  4500979 atacaaaattttccgat---ttgttTC------------TG---TAAGCACtacta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    334079 34 -   386604 ---------tttcaaac---tttttgtt-------cACATG---CAATATTTACTT
i caeSp111.Scaffold622  C 0 I 5
s caeJap4.Scaffold17084   104782 26 +   375229 ATAATTTTTGTTGCATtatctttttt------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0       1570673 888 -  4147112 I

a score=311908.000000
s ce10.chrX              4335559 536 + 17718866  
s cb4.chrX              12098518 528 - 21540570  
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   3216545 500 +  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    334118 477 -   386604  
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0       1571561 520 -  4147112  
i caePb3.Scfld02_0      I 888 C 0
s caeJap4.Scaffold17084   104808 423 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-25539.000000
s ce10.chrX              4336095 137 + 17718866 catgcggcaccacaataatcaaatattttagcaaaaagtttctg---aaagatgttctaaattttatctgatttttttttgaaaattgaaaataaactcagtttttgccaattgttggactttttgaaagtcgtcctttc
s caeRem4.Crem_Contig0   3217045  36 +  4500979 ----------------------------------------tttgagtaag--------aaaaatgat--------------gaaacagaaaaaa------------------------------agaa------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    334595  41 -   386604 ----------------------------------tgaacttttg---aagt-ttttctaaacatga---------------gaagttgaagaaa----------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572081  40 -  4147112 -------------------------------CAgtaaacttttg---gaa--------aataataa---------------gaaatcGGAGAAA--CTC-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   105231  58 +   375229 -------------------------------------------------------------------CAGGGGGCACCCTGGAAGTTGAaacaa--aatactttttttcaatgggTTGGATATTGGA-------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              12099046  52 - 21540570 I

a score=-17488.000000
s ce10.chrX              4336232 68 + 17718866 aaaaactgttcagcatttttatttgtttaatatttagtcattttgacaccataa-----gagtagttttaaac
s cb4.chrX              12099098 24 - 21540570 --aaa----------------------------------------aacctATGA-----AAATAGTTGTAA--
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   3217081 22 +  4500979 ---------------------------------------------acgctATG------AAATAGTTGTAAAC
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold622    334636  6 -   386604 -----------------------------------------------------------aaaaag--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572121 23 -  4147112 ----------------------------------------------TGACATAAACACtaagaagatag----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   105289 27 +   375229 -----------------------------------------tttgagaaaagaa-----aagaaggtaCAAGC
i caeJap4.Scaffold17084 C 0 C 0

a score=-13169.000000
s ce10.chrX              4336300 78 + 17718866 aattttccaacttgcgctactccacctttaaCTGTGTACAAGTTGAAGGATTTATAAAAAAGTGTTGTAAG-------------ATCTTGT
s cb4.chrX              12099122 21 - 21540570 ----------------------------------------------------------------------ACTGATTGGAGAGCCCGTTGG
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold622    334642 46 -   386604 --------------------------------------agaagagaaag-gcTATGAAATA--ATTGTAAGCTGATCGGA----CCCTCGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572144 48 -  4147112 -------------------------------------aaaaagaaaaagagctaTGAAATG--ATTGTAAGCTGATCGGA----CCCTTGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   105316 35 +   375229 -------------------------------------------------GGATAGAAGATA--AACGTAGAGAAATGAAC----ACTTTG-
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   3217103 13 +  4500979 I

a score=182711.000000
s ce10.chrX              4336378 416 + 17718866  
s cb4.chrX              12099148 439 - 21540570  
i cb4.chrX              I 5 I 122
s caeRem4.Crem_Contig0   3217116 400 +  4500979  
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold622    334688 402 -   386604  
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0       1572192 402 -  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084   105351 412 +   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-19824.000000
s ce10.chrX              4336794  83 + 17718866 TAGATTAAGATTTCATTGGTAAAATGGTTGAAAAAG------------CCGAGAA--AAACtaattaataaatttta------------------------------------------taattta----tGAAATCTTTGAG
s caeRem4.Crem_Contig0   3217516 105 +  4500979 ----TTAAGTATTCATTGCTGGGCTAG-----------------------AAATA--GGATAAGTGCAAGCACTTTCTCCggacgtttttttc---------ttttcaatggaAACGAACAATGAAAACGTAAACGTTTTGAG
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold622    335092  83 -   386604 ---------TATTCATTGGTTCTTAAG--------------------------------AATAGTGCAAGCACTTTC-------------GTCAATGGTTTTTTCGGAGTGAAAACGAACAATAGA----TATACATTTCT--
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0       1572596  79 -  4147112 ---------TATTCATTGgccttcaaaataaaaaaa--------------aagaa--gtaataGTGCAagcattttc-------------ttc----------------------tgaacaatgga----ggaaattttttta
i caePb3.Scfld02_0      I 2 I 1
s caeJap4.Scaffold17084   105763  87 +   375229 ---------------ttgtctattcaattaaaaaagggcacaattttttaaagaactaGAATAATTGAAGTACATAT-----------------------------TGATAgaaattaagaaaatg----tcaaa--------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              12099587 122 - 21540570 I

a score=-47914.000000
s ce10.chrX              4336877 73 + 17718866 ATAGACCTGAGCA-----TATTTTA----------AAACAATACA--AATTTAG------------------AAGAAC---CTTATTTTT-----------CATGAAAGAGATT-GAAGTATC
s cb4.chrX              12099709 69 - 21540570 ----ATGTTTTCGAAGAATACTGCA-------AAataacaaaac------gaaa------------------aaaa------tcagtgTA---------GACATTAGTGAAATCAGAGT----
i cb4.chrX              I 122 I 2
s caeRem4.Crem_Contig0   3217633 83 +  4500979 ----ACGTTTCCG-----TATTTTC-------TGTTCacaaaaca--gctgaaa------------------aatggc---ttCAGCTTA-TTAAAAGCGACACGGAATAAATTAGAAGTAAC
i caeRem4.Crem_Contig0  I 12 I 39
s caeSp111.Scaffold622    335175 89 -   386604 ---ATCAATTCCG-----TTTgctc-tacattttttgaCTCAACA--GCTAAATTC----------------ACGAacactttctgttttctataAAGTgcca--aaaggaa-----aaaaac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572676 96 -  4147112 ---atcgtttttc-----ttttttcatgcaTTTCTGAACTGAACA--GCTGAATTTT--------------AAATGTCATATTCTGATGT-TATAGAATGTCA--GAATAAGCTATTAGTAAC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084   105850 66 +   375229 ------------------------------ataaaatgcaaaataggggtgaaaattcgaaaaattcactaaaaaaatattttttgactg---------------gaatat------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-6762.000000
s ce10.chrX              4336950 31 + 17718866 ATGATTTTCAATTCTATTTCGCAATGTTAGC-----
s cb4.chrX              12099780 22 - 21540570 TCCAAATTTCATCATC-ATcagg-------------
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    335264  7 -   386604 -----------------ttcaaag------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572772 24 -  4147112 ATGAATCTTagttatgtttcaaaa------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   105916 28 +   375229 -tgaattttttttaattttcaaac-------tcaat
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0   3217716 39 +  4500979 I

a score=432.000000
s ce10.chrX              4336981 13 + 17718866 ATTTCATTTAAGA
s cb4.chrX              12099802 10 - 21540570 ---ttttggaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3217755 11 +  4500979 --ATTTCATAATA
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold622    335271 11 -   386604 --aaccCTTAAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572796 11 -  4147112 --atcatgtgAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084   105944 13 +   375229 atttcagttaaaa
i caeJap4.Scaffold17084 C 0 T 33957

a score=-19847.000000
s ce10.chrX              4336994 31 + 17718866 TTGAAATATCCTTTTTGAAAGTGTGAGAATT-----------------------------------------------
s cb4.chrX              12099812  8 - 21540570 ------------------------aaagagtt----------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3217766 22 +  4500979 CAgaaataact----------tttaaaaaatt----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335282 67 -   386604 TGGGCTGATTT----------CGTAATCAGTGTAgcgtaaaaaattttaaacttgGCCTGCTGCCCGTATTAAGAGT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572807 43 -  4147112 TTGACG----------------GTAATCAATTT--CATAATCA--CTGAAACGTGA---------------GAGAATC
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17084   105957 33957 +   375229 T

a score=-6855.000000
s ce10.chrX              4337025 23 + 17718866 AAATATTCCCATTGAAACTATCA--------
s cb4.chrX              12099820 19 - 21540570 -acGACCTTTTC---------GGCTCGGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   3217788 28 +  4500979 -atgagttTCTCTAGACCAATTGATAGGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335349  5 -   386604 --------------------------GAATA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       1572850 30 -  4147112 I
e caeJap4.Scaffold17084   105957 33957 +   375229 T

a score=84940.000000
s ce10.chrX              4337048 243 + 17718866 AACTATC-AAAGACCAGAGAACAA--CTCAAAAACAGTACTCTATTTCAGATAAGTTGTACCGTGATAAAAAAAAAGAAGTTAATATA-------ACCGACCGCAG-GCGCTACATTCGACGAGCA-TTCGTAATGCCCTCGGC-----TCACTCTACGTTATTTGAGCAGTGTGT--GGTC--GA-------GGCGAAAGGGGGAAAAGGACGGGAAAGAGTGCGAA------GTGTGTACTGCGCTCGTTTC---ATAAGACTTGACCCTTCACACGT
s cb4.chrX              12099839 237 - 21540570 AACCATGAAAAGATCAGAGAAC----------------TGTATTTC---TGTACA-------GTGAT---AAGAAGAGCATTAACTTCTACCGGAGTCGGACGCAATGCACCACACCCGACGAGCA-TTCGTAGAGCTCGCAGGGAGCGCTGCTCGTCGTTGTTTGAGCAGTGTGTGCGGTCGGGG-------GATGGAAGGGCGAA---GGAGAAAACGAGTGCGATATATGCATGTGTACTGCGCTCGTTTT---ATAAGACTTGACCcttcacacat
i cb4.chrX              C 0 n 0
s caeRem4.Crem_Contig0   3217816 230 +  4500979 AACCATT-AAAGACCAgagaacaa--ttcaaaaatcggaGCATTTC---AATGCATAGAACTGTGAT---AAACGAGCCGTTAATATT-------ACCGGCCGCAA-GCATCACATTCGACGAGCA-TTCGTAG-GCTTGC--------CGGCCTCTCGTTGTTTGAGCAGTGTGT--GGTC--GA-------Gacgaaagg--------aaagaaaaagagtgcGATAT----ATGTGTACTGCGCTCGTTGTAGAAGAAGACATGACCCTTCACACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335354 234 -   386604 ----GTG-AAAGATCAGAgaacaaa-tttaaaaacggggaaaaaat---gatgaattgcTCCGTGAT---AGACGAGCAGTAAATATT-------ACCGACCGCAA-GCACCACATCTGACGAGCATTTTGTAC-GCTC-CGGGGCCCGCCGTGC---GTTGTTTGAGCAGTGTGT--GGTC--GAAAGACGGGACGAgagg--------aaggaaaaagagtgCGAT------ATGTGTACTGCGCTCGTTTT---ATAAGACTTGACCCTTCACACAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       1572880 231 -  4147112 AACAATG-AAAGATCAgagaacaaattttgaaaacggagcgttttt---gatgaattgctCCGTGAT---AGGCGAGCAGTAAATATT-------ACCGGCCGCAA-GCATCGCATTCGACGAGCA-TTTGTAC-GTT----GCCCTCGTCGTGCCTTGTTGTTTGAGCAGTGTGT--GGTC--GA-------Gacgaaaag--------gaagaaaaggagggCGAT------ATGTATACTGCGCTCGTTTT---ATAAGACTTGACCCTTCACACAT
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T

a score=17256.000000
s ce10.chrX              4337291 125 + 17718866 -CAGGATGTTTGAATGCGG-------AAT------ATCGTATTGCTAACTGTGTCCTTCCTGGTGCTGTTTTGCGGTAC-TGTTTTA---TTAT-GAGAGTTG-----TTGGGTAGTCATCACCTGATTCACGTATGTTTACTATCTTT
s caeRem4.Crem_Contig0   3218046 123 +  4500979 CTGGGGTGTTTGGATGGAGTCACCAAAAT------ATTGTGTTGCTATCTAT-----------CTACATGATACCATACAAGTTGTATAGTAGTGGAGGATTG---------ATGTTTATCACCTGACTCACTAATGTTTACTatctca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335588 132 -   386604 CTGGGGTGTTT-GATGCGGTTGTCAGAATATGTGTATTCTGTTGCTATCTA------------CGATATGTTACCTTAC-AGTTGTA---TAGTGGACGActgatatttttcatatttatcaCCTGACTCAGTGATGTTGACTgtcttt
i caeSp111.Scaffold622  C 0 n 0
s caePb3.Scfld02_0       1573111 129 -  4147112 CTGGGGTGTCC-GACGCAGTCCACAAAATATACA-ATGGTGTTGCTATCTA------------CCATA--TTACCGTTT-GGTTGTA---CAGTCGAcgattgatatttttgatatttatcACTTGACTCACCTATGTTGACTTTCCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076   0 - 21540570 I

a score=-245.000000
s ce10.chrX              4337416 4 + 17718866 ACTT-
s caeRem4.Crem_Contig0   3218169 4 +  4500979 actt-
i caeRem4.Crem_Contig0  C 0 n 0
s caePb3.Scfld02_0       1573240 4 -  4147112 -TTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076 0 - 21540570 I
e caeSp111.Scaffold622    335720 0 -   386604 I

a score=100.000000
s ce10.chrX              4337420 1 + 17718866 G
s caePb3.Scfld02_0       1573244 1 -  4147112 G
i caePb3.Scfld02_0      C 0 n 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076 0 - 21540570 I
e caeSp111.Scaffold622    335720 0 -   386604 I
e caeRem4.Crem_Contig0   3218173 0 +  4500979 I

a score=0.000000
s ce10.chrX              4337421 787 + 17718866  
e caePb3.Scfld02_0       1573245   0 -  4147112 n
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076   0 - 21540570 I
e caeSp111.Scaffold622    335720   0 -   386604 I
e caeRem4.Crem_Contig0   3218173   0 +  4500979 I

a score=100.000000
s ce10.chrX              4338208 1 + 17718866 C
s caePb3.Scfld02_0       2573867 1 +  4147112 C
i caePb3.Scfld02_0      I 370 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076 0 - 21540570 I
e caeSp111.Scaffold622    335720 0 -   386604 I
e caeRem4.Crem_Contig0   3218173 0 +  4500979 I

a score=-245.000000
s ce10.chrX              4338209 4 + 17718866 -AAGT
s caeRem4.Crem_Contig0   1282806 4 -  4500979 -aagt
i caeRem4.Crem_Contig0  I 286 C 0
s caePb3.Scfld02_0       2573868 4 +  4147112 AAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076 0 - 21540570 I
e caeSp111.Scaffold622    335720 0 -   386604 I

a score=16576.000000
s ce10.chrX              4338213 125 + 17718866 AAAGATAGTAAACATACGTGAATCAGGTGATGACTACCCAA-----CAACTCTCATAATAAAACAGTACCGC-AAAACAGCACCAGGAAGGACACAGTTAGCAATACGAT------ATT-------CCGCATTCAAACATCCTG-
s caeRem4.Crem_Contig0   1282810 123 -  4500979 tgagatAGTAAACATTAGTGAGTCAGGTGAT---------AAACATCAATCCTCC----ACTACTATACAACTTGTATGGTATCATGTAG---ATAGATAGCAACACAAT------ATTTTGGTGACTCCATCCAAACACCCCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622     50884 132 +   386604 aaagacAGTCAACATCACTGAGTCAGGtgataaatatgaaaaatatcagTCGTCC-------ACTATACAAC-TGTAAGGTAACATATCG----TAGATAGCAACAGAATACACATATTCTGACAACCGCAT-CAAACACCCCAG
i caeSp111.Scaffold622  I 411 C 0
s caePb3.Scfld02_0       2573872 129 +  4147112 CAGGAAAGTCAACATAGGTGAGTCAAGTgataaatatcaaaaatatcaatcgTCG-------ACTGTACAAC-CAAACGGTA--ATATGG----TAGATAGCAACACCAT-TGTATATTTTGTGGACTGCGT-CGGACACCCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   105957 33957 +   375229 T
e cb4.chrX              12100076   0 - 21540570 I

a score=82539.000000
s ce10.chrX             4338338 243 + 17718866 ACGTGTGAAGGGTCAAG---TCTTATGAAACGAGCGCAGTA------CACACTTCGCACTCTTTCCCGTCCTTTTCCCCCTTTCGC--C-------TCGAC--CACACACTGCTCAAATAAC---GTAGAGTGAG--------CCGAGGGCA-TTAC-GAATGCTCGTCGAATGTAGCGC-CTGCGGTCGGT-------TATATTAACTTCTTTTTTTTTATCACGGTACAACTTATCTGAAATAGAGTACTGTTTT-TGAGTTGTTCTCTGGTC-TTTGATAGTT
s cb4.chrX              9440494 237 + 21540570 atgtgtgaagGGTCAAG---TCTTATAAAACGAGCGCAGTACACATGCATATATCGCACTCGTTTTCTCC---TTCGCCCTTCCATCCC-------CCGACCGCACACACTGCTCAAACAAC-------GACGAGCAGCGCTCCCTGCGAGCTCTAC-GAATGCTCGTCGGGTGTGGTGCATTGCGTCCGACTCCGGTAGAAGTTAATGCT---CTTCTTATCAC-------TGTA-CAGAAATAC-----------------AGTTCTCTGATCTTTTCATGGTT
i cb4.chrX              I 449 C 0
s caeRem4.Crem_Contig0  1282933 230 -  4500979 ATGTGTGAAGGGTCATGTCTTCTTCTACAACGAGCGCAGTACA----CATATATCgcactctttttctt--------tcctttcgt--C-------TCGAC--CACACACTGCTCAAACAAC-------GAGAGG--------CCGGCAAGC-CTAC-GAATGCTCGTCGAATGTGATGC-TTGCGGCCGGT-------AATATTAACGGC---TCGTTTATCACAGTTCTATGCA-TTGAAATGC--tccgatttt-tgaattgttctcTGGTC-TTTAATGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    51016 234 +   386604 ATGTGTGAAGGGTCAAG---TCTTATAAAACGAGCGCAGTA------CACATATCGcactctttttcct--------tcctcTCGT--CCCGTCTTTCGAC--CACACACTGCTCAAACAAC---GCACGGCGGG--------CCCCGGAGC-GTACAAAATGCTCGTCAGATGTGGTGC-TTGCGGTCGGT-------AATATTTACTGC---TCGTCTATCACGGAgcaattcatcattttttc--cccgttttt-aaatttgttcTCTGATC-TTTCAC----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2574001 231 +  4147112 ATGTGTGAAGGGTCAAG---TCTTATAAAACGAGCGCAGTA------TACATATCGccctccttttctt--------ccttttcgt--C-------TCGAC--CACACACTGCTCAAACAACAAGGCACGACGAG-----------GGCAAC-GTAC-AAATGCTCGTCGAATGCGATGC-TTGCGGCCGGT-------AATATTTACTGC---TCGCCTATCACGGagcaattcatcaaaaacgc--tccgttttcaaaatttgttctcTGATC-TTTCATTGTT
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17084  105957 33957 +   375229 T

a score=-6372.000000
s ce10.chrX             4338581 23 + 17718866 TGATAGTTTCAATG---------GGAATATTT---
s cb4.chrX              9440731 19 + 21540570 -------TCCGAGC---------CGAAAAGGTCgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1283163 28 -  4500979 -------TCCTATCAATTGGTCTAGAGAaactcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    51250  5 +   386604 ---TA--TTC-------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2574232 30 +  4147112 I
e caeJap4.Scaffold17084  105957 33957 +   375229 T

a score=-6080.000000
s ce10.chrX             4338604 31 + 17718866 AATTCTC---------------ACACTTTCAAAAAGGATATTTCAA
s cb4.chrX              9440750  7 + 21540570 aactctt---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1283191  7 -  4500979 aattttt---------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    51255 33 +   386604 -ACTCTTAATACGGGCAGCAGGCcaagtttaaa------------a
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2574262 18 +  4147112 GATTCTC---------------TCACGTTTCAG-------------
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17084  105957 33957 +   375229 T

a score=-4024.000000
s ce10.chrX             4338635 13 + 17718866 TC--------------TTAAATG--AAAT
s cb4.chrX              9440757 11 + 21540570 -t--------------ttttcca--aaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1283198 26 -  4500979 -taaaagttatttcTGTATTATG--AAAT
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold622    51288 15 +   386604 tt--------------ttttacgcTACAC
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2574280 12 +  4147112 -T--------------GATTATG--AAAT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  269272 13 -   375229 tt--------------ttaactg--aaat
i caeJap4.Scaffold17084 I 1823 C 0

a score=-7999.000000
s ce10.chrX             4338648 31 + 17718866 GCTAACATTGCGAAATAGAATTGAAAATCAT----------
s cb4.chrX              9440768 21 + 21540570 ----------cctgATGATGATGAAATTTGG----------
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold622    51308 31 +   386604 ACGAAATCAGCCCATTTTAAGggttctttga----------
i caeSp111.Scaffold622  I 5 I 1
s caePb3.Scfld02_0      2574297 25 +  4147112 A------CCGTCAATTTcacatgatttttga----------
i caePb3.Scfld02_0      I 5 I 18
s caeJap4.Scaffold17084  269285 28 -   375229 -------------attgagtttgaaaattaaaaaaaattca
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1283224 39 -  4500979 I

a score=-41862.000000
s ce10.chrX             4338679 73 + 17718866 GATACTTC-A---------ATCTCTTTCATG-----------AAAAATAAG-----GTTCTT----CTAAATTTGTATTGTTT----------TAAAATATGCT-CAGGTCTAT
s cb4.chrX              9440792 69 + 21540570 ----ACTCTG---------ATTTCACTAATGTC---------TAcactga--------tttt----tttc----gttttgttatTT-------TGCAGTATTCTTCGAAAACAT
i cb4.chrX              I 3 I 115
s caeRem4.Crem_Contig0  1283263 83 -  4500979 GTTACTTCTA---------ATTTATTCCGTGTCGCTTTTAA-TAAGCTGaa-----gccatt----tttcagctgttttgtGAACA-------GAAAATA-----CGGAAACGT
i caeRem4.Crem_Contig0  I 39 I 12
s caeSp111.Scaffold622    51340 88 +   386604 gttttt--------------ttccttt--tggcACTTtatagaaaacagaaagt--gtTCGT--GAATTTAGCTGTTGAGtcaaaaaatgta-gagcAAA-----CGGAATTGA
i caeSp111.Scaffold622  I 1 I 1
s caePb3.Scfld02_0      2574340 95 +  4147112 GTTACTAATA---------GCTTATTC--TGACATTCTATA-ACATCAGAATAT--GACATTTAAAATTCAGCTGTTCAGTTCAGAAAtgcatgaaaaaa-----gaaaaacga
i caePb3.Scfld02_0      I 18 I 2
s caeJap4.Scaffold17084  269313 66 -   375229 -atattccagtcaaaaaatatttttttagtgaa---------tttttcgaattttcacccct----attttgc-attttat---------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-20042.000000
s ce10.chrX             4338752  83 + 17718866 ---------------------CTCAAAGATTTCa----taaattat------------------------------------------aaaatttattaattaGTTTTTCTCGGCTTTTTCAACCATTTT----ACCAATGAAATCTTAATCTA
s caeRem4.Crem_Contig0  1283358 100 -  4500979 ---------------------CTCAAAACGTTTACGTTTTCATTGTTCGTTtccattgaaaa---------gaaaaaaacgtccGGAGAAAGTGCTTGCACTTATCCTATT---------------TCTAGCCCAGCAATGAA---------TA
i caeRem4.Crem_Contig0  I 12 I 5
s caeSp111.Scaffold622    51429  83 +   386604 -----------------------AGAAATGTATA----TCTATTGTTCGTTTTCACTCCGAAAAAACCATTGA-------------CGAAAGTGCTTGCACTAT----------------------TCTTAAGAACCAATGAA---------TA
i caeSp111.Scaffold622  I 1 I 2
s caePb3.Scfld02_0      2574437  79 +  4147112 ---------------------taaaaaaatttcc----tccattgttca----------gaa-------------------------gaaaatgctTGCACtattacttcttttttttt------attttgaaggcCAATGAA---------TA
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold17084  269379  87 -   375229 tttgacattttcttaatttcTATCAATATGTACT----TCAATTATTCt-----------------------------------------agttctttaaaaaattgtgccctttttta-------attgaatagacaa---------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9440861 115 + 21540570 I

a score=178377.000000
s ce10.chrX             4338835 416 + 17718866  
s cb4.chrX              9440976 446 + 21540570  
i cb4.chrX              I 115 I 5
s caeRem4.Crem_Contig0  1283463 400 -  4500979  
i caeRem4.Crem_Contig0  I 5 I 13
s caeSp111.Scaffold622    51514 402 +   386604  
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2574518 402 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  269466 412 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-14082.000000
s ce10.chrX             4339251 78 + 17718866 ACAAGATCTTACAACACTTTTTTATAAATCCTTCAACTTGTACACAGttaaaggtggagtagcgcaagttggaaaatt
s cb4.chrX              9441427 21 + 21540570 CCAACGGGCT--------------------CTCCAATCAGT-------------------------------------
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold622    51916 44 +   386604 ACGAGGG------------------------TCCGATCAGCTTACAATTA----TTTCATAgc-ctttct-----ctt
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2574920 45 +  4147112 CCAAGGG------------------------TCCGATCAGCTTACAATCA----TTTCAtagctcttttt-----ctt
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  269878 35 -   375229 -CAAAGT------------------------GTTCATTTCTCTACGTTTA----TCTTCTATCC--------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1283863 13 -  4500979 I

a score=-13105.000000
s ce10.chrX             4339329 68 + 17718866 gtttaaaactactcttatggtgtcaaaatgactaaatattaaacaaataaaaatgctgaacagttttt
s cb4.chrX              9441448 24 + 21540570 --TTACAACTATTTTCATaggtt------------------------------------------ttt
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0  1283876 22 -  4500979 GTTTACAACTA-TTTCATagcgt---------------------------------------------
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold622    51961  7 +   386604 -----------tcttttt--------------------------------------------------
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2574968 18 +  4147112 --------ctatcttcttaGTGT------------------------------------------TTA
i caePb3.Scfld02_0      I 3 I 5
s caeJap4.Scaffold17084  269913 27 -   375229 GCTTGtaccttcttttcttttctcaaa-----------------------------------------
i caeJap4.Scaffold17084 C 0 C 0

a score=-23607.000000
s ce10.chrX             4339397 137 + 17718866 gaaaggacgactttcaaaaagtccaacaattggc------aaaaactgagtttattttcaattttcaaaaaaaaatcagataaaatttagaacatctt---tcagaaactttttgctaaaatatttgattattgtggtgccgcatg
s caeRem4.Crem_Contig0  1283898  36 -  4500979 ------------------------------------------------ttctttttttctgtttc--------------atcattttt--------cttactcaaa----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    51968  40 +   386604 ----------------------------------------------------tttcttcaacttc---------------tcatgtttagaaaa-act---tcaaaagttc-----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2574991  40 +  4147112 -------------------------------------------------GAGTTTCTCCgatttc---------------ttattatt--------tt---ccaaaagtttacTG-------------------------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  269940  58 -   375229 ---------------------TCCAATATCCAAcccattgaaaaaaagtattttgttTCAACTTC---------------CAGGGTGC--------CC---CCTG-----------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9441472  52 + 21540570 I

a score=318020.000000
s ce10.chrX             4339534 536 + 17718866  
s cb4.chrX              9441524 528 + 21540570  
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0  1283934 500 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    52008 478 +   386604  
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2575031 520 +  4147112  
i caePb3.Scfld02_0      C 0 I 888
s caeJap4.Scaffold17084  269998 423 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-10667.000000
s ce10.chrX             4340070 53 + 17718866 TTTTAATGCTGTGCCCAAGTGGGACTAAATAAAAGAAATTGAACAAAAATTAT
s cb4.chrX              9442052 26 + 21540570 tcacaaagtt-t-----------------gaaaaaaacttgaaa---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1284434 38 -  4500979 tagtaGTGCT-TAC--------------AGAaacaaatcggaaaattttgtat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    52491 34 +   386604 AAGTAAATAT-TGC--ATGTg-------aacaaaaagtttgaaa---------
i caeSp111.Scaffold622  I 5 C 0
s caeJap4.Scaffold17084  270421 26 -   375229 ---------------------------aaaaaagataATGCAACAAAAATTAT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2575551 888 +  4147112 I

a score=-22460.000000
s ce10.chrX             4340123 187 + 17718866 ATTCGTTTTGTGAATTAGAGTTAAAAACA----------------GTAAAGTTCTGATTTTTCCACAGAAAAAAATGTAGCTTAAAGTGGAAA-----TAACATTCAAAAGTATTCATTCAAATGCATGCCAATTGAAATTCAAAGATTTTATTCCCTACCCCTAGTCGAAAATCAAGAAGAAAACTGGACTAACAAAAAAA---CTAATT
s cb4.chrX              9442078  66 + 21540570 ---------------------cgaAGAGAAC---------------------GCTACAT------------------------AAAATGGAAT-----TAA------------------------------------AAGTAATCAA-----------------------------------AAACCCAAACAacgaaagtt---tgaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1284472 157 -  4500979 acaatttttttgagtgcaTGTCTAAAAGATCCAACAAAGTTTGAGTTAGCCTACTACGTGTTTTACAGGATAAGA--------AAAACAGAGTGTGGATAAT--------TTAGTCATTTGA-------------GCACGTAACAGATTTTGCt-------------------------agtaaaactaaaaaattaaatctaaaagaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    52525  45 +   386604 ---------------------tgaataga------------------------------------------------------aaatcagAAG-----TAA-------------------------------------------AGA-----------------------------------GATTCTCAATGATGAAAACA---C-----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2575551 888 +  4147112 I
e caeJap4.Scaffold17084  270447   0 -   375229 C

a score=194.000000
s ce10.chrX             4340310 3 + 17718866 TAA
s cb4.chrX              9442144 3 + 21540570 ttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1284629 3 -  4500979 ttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  270447 3 -   375229 TAC
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2575551 888 +  4147112 I
e caeSp111.Scaffold622    52570 0 +   386604 C

a score=157246.000000
s ce10.chrX             4340313 159 + 17718866 AGATTGTGATGGAATACTGTGGAGCTGGGTCGATCTCCGATATAATGCGTGCCAGGCGGAAACCGTTATCCGAACAAGAAATCAGTGCAGTTTTGCGCGATACTCTCAAGGGATTGCAATATTTGCATGACTTGAAGAAGATTCATAGAGATATAAAGG
s cb4.chrX              9442147 159 + 21540570 agatcgttATGGAGTACTGTGGCGCCGGATCCATATCAGACATTATGAGAGCCAGGAGGAAACCTTTGTCGGAAAAAGAAATAAGTGCAGTTCTACGGGATACGCTTAAAGGATTACAGTACCTGCATGACTTGAAGAAGATTCATAGAGATATTAAGG
i cb4.chrX              C 0 I 612
s caeRem4.Crem_Contig0  1284632 159 -  4500979 agatcgtgATGGAGTATTGTGGAGCAGGTTCGATCTCTGATATTATGCGTGCCAGGAGGAAACCTTTATCCGAAATGGAAATAAGTGCCGTTTTACGTGACACACTCAAAGGATTACAGTATTTGCACGATTTGAAGAAGATTCATAGAGATATTAAGG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    52570 159 +   386604 AGATTGTGATGGAATACTGTGGAGCAGGCTCGATCTCTGACATTATGCGTGCCAGACGGAAACCTCTGTCAGAACGAGAAATCAGTGCGGTGTTGCGAGATACACTCAAGGGCTTGCAATATTTGCACGATTTGAAGAAGATTCACAGAGATATCAAGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2576439 159 +  4147112 AGATTGTGATGGAATATTGCGGAGCTGGATCAATCTCTGACATTATGCGTGCCAGGAGGAAACCCTTGTCAGAGCGAGAAATAAGTGCGGTTCTGCGTGATACACTCAAGGGCCTGCAATATTTGCACGACCTGAAGAAGATTCATAGAGATATCAAGG
i caePb3.Scfld02_0      I 888 C 0
s caeJap4.Scaffold17084  270450 159 -   375229 AGATAGTGATGGAATATTGCGGAGCTGGCTCCATCTCTGATATAATGCGCGCTCGCCGAAAACCACTCTCAGAACTAGAAATTAGCGCCGTGCTACGTGACACGCTGAAGGGTTTACAATATTTGCACGACTTGAAGAAGATCCATAGAGATATTAAAG
i caeJap4.Scaffold17084 C 0 C 0

a score=55958.000000
s ce10.chrX             4340472 112 + 17718866 TTAGAAA----------CT------GTTTTTTTTTGAAAAAAAAAC---TGTATTTTCAGGCTGGAAACATTCTACTCAATACCGATGGAATTGCAAAGCTTGCGGATTTCGGTGTCGCTGGACAGTTGAC
s cb4.chrX              9442918 114 + 21540570 TTAAAAa----------cc------gaatatttcaaaattaa-aattcatatttttacaGGCAGGCAACATCCTCCTGAACACTGATGGAATCGCCAAATTGGCTGATTTCGGAGTTGCTGGCCAGCTCAC
i cb4.chrX              I 612 C 0
s caeRem4.Crem_Contig0  1284794 115 -  4500979 CAATAAA----------CA------ATAATTCTCTAAATTAATAATACCTTGAGTTACAGGCCGGAAATATTCTTCTGAATACCGATGGAATAGCAAAGTTAGCTGATTTTGGAGTAGCTGGACAACTTAC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    52729 113 +   386604 TGAGAAA----------TG------ATCAGCTGA-TGATTGTTACTGT-TAGTATTTCAGGCAGGAAACATTCTTCTCAATACTGATGGAATAGCTAAACTGGCAGATTTCGGTGTCGCAGGACAGTTGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2576598 119 +  4147112 TAAGAAAAATGGATCTTCG------GTAAAATGACTAGTTATCAATGC------TTACAGGCAGGAAATATTCTTCTGAACACCGACGGAATAGCAAAACTAGCAGATTTTGGTGTTGCTGGACAGCTTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  270609 116 -   375229 --TGAAA----------CTTTTGGCATAATGTTACAAagttgaaat---aaaatttttaggcTGGAAACATCCTTTTGAACACCGATGGAATTGCAAAACTTGCCGATTTTGGAGTTGCTGGCCAGCTGAC
i caeJap4.Scaffold17084 C 0 I 228

a score=293762.000000
s ce10.chrX             4340584 305 + 17718866 TGATACAATGGCAAAAAGAAATACAGTCATTGGAACGCCATTCTGGATGGCCCCTGAAGTTATCGAAGAAATCGGATATGACACAAAAGCTGATATATGGTCACTGGGAATAACAGCTATCGAAATGGCAGAGGGACGGCCTCCTTATTCAGATATTCATCCGATGCGAGCAATCTTCATGATTCCAACTAAACCACCACCTACGTTTAAAAAACCTGAAGAATGGTCGTCCGAGTTCAATGATTTCATAAGAAGCTGTTTAATTAAAAAGCCAGAAGAAAGAAAAACGGCACTCCGATTGTGTG
s cb4.chrX              9443032 305 + 21540570 TGACACAATGGCAAAAAGAAATACAGTAATAGGAACACCGTTCTGGATGGCGCCTGAAGTGATCGAGGAGATTGGTTATGACACGAAAGCTGACATCTGGTCACTTGGAATAACAGCAATTGAGATGGCTGAAGGACGTCCTCCATACTCGGACATTCATCCAATGCGTGCAATTTTTATGATCCCTACAAAGCCACCGCCGACATTTAAAAAACCAGAAGAGTGGTCATCAGAATTCAACGATTTCATTAGATGTTGTCTTATTAAGAAGCCTGAAGAAAGGAAGACAGCACTTCGGCTCTGTG
i cb4.chrX              C 0 T 710
s caeRem4.Crem_Contig0  1284909 305 -  4500979 TGATACAATGGCAAAAAGAAACACAGTTATTGGAACTCCTTTCTGGATGGCACCAGAAGTCATTGAAGAAATCGGTTACGACACAAAAGCGGATATATGGTCATTAGGAATAACGGCAATTGAGATGGCAGAAGGACGTCCTCCGTATTCTGACATTCATCCGATGCGTGCAATTTTCATGATCCCTACAAAGCCTCCGCCgacattcaaaaaaccagaagaatGGTCTGCAGAATTCAATGACTTTATAAGATGTTGTTTAATTAAAAAACCGGAGGAACGGAAAACAGCTCTCAGGCTGTGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    52842 305 +   386604 TGACACAATGGCAAAAAGGAACACTGTGATTGGAACTCCATTTTGGATGGCTCCAGAAGTGattgaagaaattggatACGATACGAAAGCAGATATCTGGTCACTAGGAATTACAGCTATCGAAATGGCCGAAGGACGTCCTCCATACTCGGATATTCATCCGATGCGTGCTATTTTCATGATTCCTACAAAACCACCGccaacattcaaaaaaccagaagaatGGTCTTCTGAGTTCAATGATTTCATCAGATGCTGTTTGATCAAGAAAccagaagaaaggaaaactgCTCTCAGGTTATGCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2576717 305 +  4147112 GGATACTATGGCCAAAAGAAATACAGTTATTGGTACTCCATTTTGGATGGCACCGGAGGTTATTGAAGAGATCGGATACGATACTAAGGCTGATATTTGGTCGCTTGGAATCACTGCGATTGAAATGGCAGAAGGACGTCCTCCATATTCTGACATCCATCCAATGCGTGCCATTTTCATGATCCCTACAAAACCACCTCCAACATTCAAGAAGCCAGAAGAATGGTCAGcagaattcaatgattttatCAGATGTTGTCTAATCAAAAAACCGGACGAAAGAAAGACTGCGCTCCGGCTATGCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  270953 305 -   375229 GGACACAATGGCAAAAAGGAACACCGTAATTGGAACACCCTTCTGGATGGCGCCGGAAGTTATCGAAGAAATCGGCTATGACACCAAAGCCGACATTTGGTCATTGGGAATTACCGCAATTGAGATGGCAGAGGGACGTCCACCGTATTCAGATATTCATCCGATGAGAGCAATCTTTATGATACCGACGAAGCCACCACCGTCTTTCAAAAAACCCGAGGAATGGTCCGCAGACTTTAACGATTTTATTCGAAGTTGTCTTATCAAGAAACCAGACGAGCGGAAGACTGCTTTGAAACTTTGCG
i caeJap4.Scaffold17084 I 228 C 0

a score=3810.000000
s ce10.chrX             4340889 4 + 17718866 AGGT
s cb4.chrX              9442627 4 + 21540570 AAAC
i cb4.chrX              T 710 I 2
s caeRem4.Crem_Contig0  1285214 4 -  4500979 AGGT
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold622    53147 4 +   386604 AGgt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2577022 4 +  4147112 AGGT
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold17084  271258 4 -   375229 AGGT
i caeJap4.Scaffold17084 C 0 I 2

a score=29.000000
s ce10.chrX             4340893 1 + 17718866 A
s caeSp111.Scaffold622    53151 1 +   386604 a
i caeSp111.Scaffold622  C 0 I 36
s caeJap4.Scaffold17084  271264 1 -   375229 G
i caeJap4.Scaffold17084 I 2 C 0
e caePb3.Scfld02_0      2577026 42 +  4147112 I
e cb4.chrX              9442631 2 + 21540570 I
e caeRem4.Crem_Contig0  1285218 38 -  4500979 I

a score=-1534.000000
s ce10.chrX             4340894 31 + 17718866 ---CGTATGGCTTAAAAAAAAAG--------------AAATTT----CCCAA-
s cb4.chrX              9442633 49 + 21540570 ---CGTATTTCTTTTAATAGAAGCGTGCCCAGATCGTAAACTTTATACTCAG-
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold17084  271265 31 -   375229 AGCAGGATTTAATAAAATAGAAG------------------TT----ATCAAA
i caeJap4.Scaffold17084 C 0 I 7
e caePb3.Scfld02_0      2577026 42 +  4147112 I
e caeSp111.Scaffold622    53152 36 +   386604 I
e caeRem4.Crem_Contig0  1285218 38 -  4500979 I

a score=-2473.000000
s ce10.chrX             4340925 811 + 17718866  
s cb4.chrX              9442682 639 + 21540570  
i cb4.chrX              C 0 I 16
e caePb3.Scfld02_0      2577026  42 +  4147112 I
e caeJap4.Scaffold17084  271296   7 -   375229 I
e caeSp111.Scaffold622    53152  36 +   386604 I
e caeRem4.Crem_Contig0  1285218  38 -  4500979 I

a score=0.000000
s ce10.chrX             4341736 35 + 17718866 CACAGTTTGTGAACATTGCTCACTTCATAGATATT
e caePb3.Scfld02_0      2577026 42 +  4147112 I
e caeJap4.Scaffold17084  271296  7 -   375229 I
e cb4.chrX              9443321 16 + 21540570 I
e caeSp111.Scaffold622    53152 36 +   386604 I
e caeRem4.Crem_Contig0  1285218 38 -  4500979 I

a score=3242.000000
s ce10.chrX             4341771 4 + 17718866 TTTC
s caeRem4.Crem_Contig0  1285256 4 -  4500979 TTTC
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622    53188 4 +   386604 TTCC
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2577068 4 +  4147112 TTTC
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold17084  271303 4 -   375229 TTTC
i caeJap4.Scaffold17084 I 7 C 0
e cb4.chrX              9443321 16 + 21540570 I

a score=69429.000000
s ce10.chrX             4341775 112 + 17718866 AGCACACATTCATCAAAAATGCACCAGGTTGCGATATTATGCAGTTGATGATCCAGGATGCTCAAGAAAAAGCTATACTAGGACAAGCACCAATGGT------TGACAAAAAATTTCA
s cb4.chrX              9443337 102 + 21540570 AGCACACGTTTATTGAGAACGCACCAGGATGTGATGTGTTGCAAGCGATGATATTAGATGCCCAAGAAAAAGTGCTGCTCGGACAAGCTCCTGTGGT------------AA----AGA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0  1285260 106 -  4500979 AGCACACCTTCATAGAAAACGCGCCAGGGTGTGACATTCTACAATCAATGATTCAAGATGCACAGGAAAAAGCAGCACTTGGACAAGTCCCTCTGGT------------CAGTATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    53192 113 +   386604 AGCATACGTTCATTGAAAATGCTCCCGGATGTGACATTTTACAATCAATGATTCAAGACGCTCAAGAGAAAGCAGCGTTAGGACAAGCACCAATGGT-----AACATAAAATGTTGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2577072 118 +  4147112 AGCATCctttcattgaaaatgctCCTGGATGTGATATATTGCAATCAATGATTCAAGACGCACAAGAGAAAGCAGCACTTGGACAGGCACCTATGGTTAGGAAACATGAAAGAGTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  271307 104 -   375229 AGCACAAGTTTATCGAAAACGCTCCTGAATCTGAAGTTCTTCAAGCGATGATTCAAGACGCACAGGAAAAAGCAGCATTGGGGCAAATCCCACCGGT------------AA--TTTAA
i caeJap4.Scaffold17084 C 0 I 754

a score=65899.000000
s ce10.chrX             4341887 124 + 17718866 TTAGAAAACGA-----AAATTTGATTGTTT---TTTCAGGCAGCAAGCAGCGGAAATGATGCAACGTTGCTAAGCGAGGGAATGTCCACTATGATTGACGGTGGAGAGTCTACGTTAGTTCAACACAAAGGT
s cb4.chrX              9443439 129 + 21540570 AGCGAAAAGGAACataaaacctaatttttcgcATTTCAGGCAGT---CGCCGGAGCGGATGCCACGTTACTAAGCGAAGGAATGTCAACGATGATCGACGGTGGAGATGCGACTCTCGTGCAGTATAAAGGT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1285366 125 -  4500979 AGCAAAAAGAAGCTTTTTATGTAAAATAT----TTCTAGACAGC---CAGTGGACCTGATGCCACGTTGCTAAGTGAAGGAATGTCGACGATGATTGACGGAGGGGATGCAACACTGGTCCAACACAAAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    53305 120 +   386604 ATAGAAACGGaggaataagaaaaa---------cttcaGGTCGC---TAGTGGAGGAGATGCCACGTTGCTTAGCGAAGGAATGTCTACGATGATTGACGGCGGAGATGCGACTCTAATTCAGCACAAAGGT
i caeSp111.Scaffold622  C 0 I 568
s caePb3.Scfld02_0      2577190 115 +  4147112 AGTcatataga-----aaatgaaa---------attcaggcCGT---GAGCGGAGGCGATTCCACGTTACTAAGCGAAGGGATGTCTACGATGATTGACGGCGGAGATGCGACTTTAGTCCAACACAAAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  272165 122 -   375229 TTAGGAAAAGA---tttaaattgataatt----tttcaGACTGC---AAACGCAAACGACGCCACAATCTGTAGCGAGGGTTTGTCGACAATGATTGACGGAGGAGAAGCAACATTGATACAGCATAAAGGT
i caeJap4.Scaffold17084 I 754 I 14

a score=1336.000000
s ce10.chrX             4342011 2 + 17718866 AT
s cb4.chrX              9443573 2 + 21540570 AT
i cb4.chrX              I 5 I 6
s caeRem4.Crem_Contig0  1285491 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 I 498
s caePb3.Scfld02_0      2577305 1 +  4147112 -T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  272301 2 -   375229 at
i caeJap4.Scaffold17084 I 14 C 0
e caeSp111.Scaffold622    53425 568 +   386604 I

a score=585.000000
s ce10.chrX             4342013 18 + 17718866 TATGATAGTTTTG------AATAT
s cb4.chrX              9443581 24 + 21540570 TATACGAATTTAAGCAATAAATAA
i cb4.chrX              I 6 C 0
s caePb3.Scfld02_0      2577306 19 +  4147112 CGTGTTGGTTTAG-----AAATAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  272303 18 -   375229 ttttctaatttta------aatGA
i caeJap4.Scaffold17084 C 0 I 188
e caeSp111.Scaffold622    53425 568 +   386604 I
e caeRem4.Crem_Contig0  1285493 498 -  4500979 I

a score=-9298.000000
s ce10.chrX             4342031  50 + 17718866 GTAAT----------------------------------TTGATCATATGTGTCG-------------------------------TGGGAAA--------------------------------------------------GTGCAAA-------ACTCACGCA--CCTAAT-----
s cb4.chrX              9443605 140 + 21540570 GAAAC--ACGTAGAAATCTGagtgaaaaaaagggaaag-gaAATCATATTTCTTATT--AAAGGAATTTTTCTTTACGCAAAGCAGtggaaaa------gataaaaaagagtgtaaacggg--------------aagcgaagatacaaa-------aatgacgtt--tcaaat-----
i cb4.chrX              C 0 I 113
s caePb3.Scfld02_0      2577325 174 +  4147112 GCAATCGAGATGGGAatttcaataaacaaaaaagaatgtgtTCACATATGCCTCATTTCAAAAGAGAATGTGATtacgaaa-----tcgaaaaataatggaGGAAATCGACTTCTAACATGTGACTCTGACTATCAGAAGAGGATTTAGAGGCTTTGACTAACGTCAATCGGACTACAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  272321 188 -   375229 I
e caeSp111.Scaffold622    53425 568 +   386604 I
e caeRem4.Crem_Contig0  1285493 498 -  4500979 I

a score=-9389.000000
s ce10.chrX             4342081  68 + 17718866 TTGCACTACT--------------------------T---------------TGTAGCTC---------------------------------------GATATTTAGTAGTA-----ACGTGAAGCAGGACACAGG---------------GAGAAATTACAAAAT-------------------T
s cb4.chrX              9443858 142 + 21540570 TTGCATTATTAGGTTAGAAGCGCAGGTGCATTgattt---------------tgtgtttcaaaagaaaaggaagagaa-----gagTGTATAGGCGGAGGCTGCTTAGGAGTGAAGCCTTGGAGACCCGAAAATGTGGagcttttt------tggaaattgacaTGT-------------------C
i cb4.chrX              I 113 C 0
s caePb3.Scfld02_0      2577499 176 +  4147112 TTTCAGTATT---CTAGAACTACATTTTGAGTGTTTTCTAGTCAGAAGAGTATATGTTCTGTGAGAACCAAAATAGAACTCATGAGTCTCT--------GATATTTAATCTCATATGTATGGAAACACGAGCATAACCGGCTTTTGCATGTACAGAAAGTAATTACTGAGCCaaaaaaaCAGGTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  272321 188 -   375229 I
e caeSp111.Scaffold622    53425 568 +   386604 I
e caeRem4.Crem_Contig0  1285493 498 -  4500979 I

a score=-3665.000000
s ce10.chrX             4342149 24 + 17718866 ACCTAGTGAAAT------------AGAACTCACAAT---------------
s cb4.chrX              9444000 24 + 21540570 GCATAAATAAGC------------AAGAAGGAGAAG---------------
i cb4.chrX              C 0 I 36
s caePb3.Scfld02_0      2577675 24 +  4147112 GCGTAATCAATC------------AGAAGGAAGTAG---------------
i caePb3.Scfld02_0      C 0 I 106
s caeJap4.Scaffold17084  272509 51 -   375229 AACTAAAAAGATACAATTTCTCAGAAAAGCAACAAACAACCATTCTACTTT
i caeJap4.Scaffold17084 I 188 C 0
e caeSp111.Scaffold622    53425 568 +   386604 I
e caeRem4.Crem_Contig0  1285493 498 -  4500979 I

a score=145311.000000
s ce10.chrX             4342173 292 + 17718866 TTCAGACAACTATGTCACTGCTCAAAGTCTTCGAAGTCAAATGGAAAGCTTGAGAATTGGTGGAGAAATTCCTAAATCGGCATATAGTTCGTT-----TTTTCATGAGCGTTAAAT-------------------TGC----------------ATTCAC------------------------------------------------------------------CGATATAGTTCCAGGCTCGTCGAAAAATGGCAACTCACCGCGCGTTCAACCACCGGGTCACACCGCAAGCGCTTCAGACCCTTCAAAAAACCAACCGTTTGCTCAAGAT---GGAACCGGTCCAAACTTTCAATTGGGCACCAGCGAGAGCAGTTACAAAGATGCTAGTTATAAT
s cb4.chrX              9444060 291 + 21540570 TTCAGATAACTATGTGACGGCGCAAAGTCTTCGAAGCCAGatggaaagtttgaaaattggaggagaaattccaaaatctgcTTATGGTACACC-----TATT----CCGTTTGGAG-------------------TTCAA--------------AATCAGAT----CTTTTG-------------------------------------------------------------TTTGCAGGTTCTTCTCGAAACAATGGATCGCCACGAGTTCAGCCTCCGGGCCACACTGCTAGTGCTTGTGATCCATCCAATAATCCACCTTTTGCTGAAGAG---GGAACGGgaccaaatttccaaattggtACCAGTGAGAGTAGTTACAAAGATGCATCTTATAAT
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1285991 386 -  4500979 TTCAGATAACTATGTGACTGCTCAAAGTCTACGAAGCCAGATGGAAAGCTTGAGAATCGGAGGAGAAATTCCAAAGTCTGCATATAGtgagtc-----tttttttctcttttcgagaaatttcgaaatagctgttttcaaatataaacaaaaacaatcgaatattgtttttgttg-aataatGACT------CACAAAGcggaaaaaaacagatgaagAGTTTTACTGTTATCTTTTCAGGCTCATCCAAAAATGGTGGACAACCACGAGTTCAACCACCAGGTCACACAGCTAGTGCTTCGGATCCTTCTAAAAATAAACCATTTCCACAAGAC---GGAACAGGTCCCAACTTCCAGATCAGAACGAGTGACAGCAGTTATAAAGATGCTTCTTACAAT
i caeRem4.Crem_Contig0  I 498 C 0
s caeSp111.Scaffold622    53993 362 +   386604 tttagaCAATTATGTGACTGCTCAAAGTCTTCGAAGTCAAATGGAAAGCTTGAGGATTGGAggagaaattccaaaatctgCATATGGtgagtt-----ttca----atgtttATAT---TCGGAGAATGGCCA--GTCAGTTG-----------ACTTATGTCACGTTTTAGTT--TATTATGATTTCATGGTTCATAGCAGA---------GCGAAATCTATAAATATTATCTTGTCAGGTTCGTCACGGAATGGGGCGTCACCACGAGTTCAACCACCGGGACATACTGCGAGTGCATCAgatccatcaaaaaatcaacagtTCGGTCAAGAT---GGGACAGGTCCAAATTTCCAGATTGGGACAGGAGATAGCAGTTACAAAGACGCAGCAAGCAAC
i caeSp111.Scaffold622  I 568 C 0
s caePb3.Scfld02_0      2577805 336 +  4147112 ttcagacaaCTATGTCACTGCTCAAAGCCTTCGAAGTCAAATGGAAAGTTTGAGGATTGGAGGAGAGATTCCGAAATCTGCATATGGTGAGTttcgtcttca----atttttaaat---------aacGGC------TTGATG-----------ACTCAT------TGTTAACTGATATGATGAATATA---TTCA------------------Gaaagtt-----tgctttttttccaggatcaTCAAGGAATAATGGATCCCCGAGAGTTCAACCACCGGGACACACTGCCAGTGCATCTGACCCATCCAAGAATCAGCCATTCCCACAAGAG---GGCACGGGTCCAAACTTCCAGATCGGAACAAGTGATAGCAGTTACAAAGATGCAACTTCCAAT
i caePb3.Scfld02_0      I 106 C 0
s caeJap4.Scaffold17084  272560 293 -   375229 TTCAGACAATTACGTGACCGCCCAAAGCCTGCGAAGTCAAATGGAAAGTCTACGTATTGGTGGAGAAATTCCAAAATCAGCATATGGTAAGCA-----AGGA----------AAAT-------------------ATCTAACATTG--------AACTGT------------------------------------------------------------------GAATTTTGTTCCAGGTTCATCACGAAACGGCGGATCGTCAAACGTTCCACCGCCAGGACGAACCACTAATGCCTCAGAAAACGCCCCGAACCAAAATTTCCCACAAGATCGAGGAACAGGGCCTAATTTCTCAATTGGGTCTGACGACAGTAGCTACAAGGAGGCCACTTATAAT
i caeJap4.Scaffold17084 C 0 C 0

a score=-8559.000000
s ce10.chrX             4342465 58 + 17718866 ATGAGTTAGTTATTTGAAAGAAAACCAATTATAAAATGATGATCTATGAGAAAAAAAA-------
s cb4.chrX              9444351 10 + 21540570 ATGAGTGAGA-------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1286377 39 -  4500979 ATGAGTAAGA------------------CTATAAAATGAAg-tgaatgagaaagaaaa-------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    54355 11 +   386604 ATCAGTAAGA------------------------------------------------A------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2578141 17 +  4147112 ATatgtaaga------------------------------------------------aaaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  272853  0 -   375229 C

a score=-13353.000000
s ce10.chrX             4342523 119 + 17718866 GCTAGCATAAAAAACGTTATTCAGCTCGAATGACTTTGACAAAAAAATGAAAAATTATTCAGGCATTTTCACAAACCTAAAATTTTATTAAAATTGAAATGTCATACCCCTTATTCTAG
s cb4.chrX              9444361  17 + 21540570 -------------------------------------GTTTTAGAAGTGaattg-----------------------------------------------------------------
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold622    54366  20 +   386604 ----------------------------------TTATTTCTAAAAGTTCACAA-----------------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2578158  76 +  4147112 acaaatgcGAAGCAAGTT---------------CTCATTCACTGAAATTCACAATTGTTCAag------------tccaaaattcaaattgcatTAAAGTATC----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  272853   0 -   375229 C
e caeRem4.Crem_Contig0  1286416   5 -  4500979 I

a score=-5059.000000
s ce10.chrX             4342642 37 + 17718866 CCATGCATGAAATGTTAGCTGATTAAGATTTTGCCTG
s caeSp111.Scaffold622    54386  4 +   386604 --------------------AATA-------------
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2578234 14 +  4147112 ---------------TAGATGATAGAGAT--------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  272853  9 -   375229 CCACGTATG----------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9444378 15 + 21540570 I
e caeRem4.Crem_Contig0  1286416  5 -  4500979 I

a score=0.000000
s ce10.chrX             4342679 23 + 17718866 TAAATTCTAAAAAATGAAAAATG
e caePb3.Scfld02_0      2578248  7 +  4147112 I
e caeJap4.Scaffold17084  272862  0 -   375229 C
e cb4.chrX              9444378 15 + 21540570 I
e caeSp111.Scaffold622    54390  3 +   386604 I
e caeRem4.Crem_Contig0  1286416  5 -  4500979 I

a score=-14208.000000
s ce10.chrX             4342702 102 + 17718866 TCACTACTAATGTTTTGTGGAAAATTTGTATTGCATAAGTTTTGAAACTTAGAAAGACATATTTTGAAATCTTGAATTGAATCACAGTTAAAAAACACCTAC
s caeSp111.Scaffold622    54393   8 +   386604 TTAAT-TTA---------------------------------------------------------------------------------------------
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2578255  40 +  4147112 TTACT-CTAGTCTT-------------------------------------GAAGGTACCATGTCAAAATATAGAAT------------------------C
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17084  272862  51 -   375229 -------------------------------Tacatagtttttaaaaattcaatcaggatttatcaacaaaaaaaagacaaa--------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9444378  15 + 21540570 I
e caeRem4.Crem_Contig0  1286416   5 -  4500979 I

a score=-1139.000000
s ce10.chrX             4342804 2 + 17718866 TC-
s cb4.chrX              9444393 2 + 21540570 tt-
i cb4.chrX              I 15 C 0
s caePb3.Scfld02_0      2578295 1 +  4147112 -T-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  272913 2 -   375229 -tg
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    54401 0 +   386604 C
e caeRem4.Crem_Contig0  1286416 5 -  4500979 I

a score=144686.000000
s ce10.chrX             4342806 205 + 17718866 TTTCAGTGAACACGGAAGCCGAATACGAAAATAGATTTCAACGGGCAGTGGTCGATGGAGATTTCGAATTTGTAAG--TGTATTTCGTAATTTTT-CTAATAA--------CGAAATAGCTGC---ATTTAGTTACGAAACATCACGCTAGACGAACTGATTCGAAGGAAAGAAAGTTTGGATTCGGAGATGGAAGAAGAAATACGAGAGTTGCAGAGA
s cb4.chrX              9444395 205 + 21540570 tttcagtGAACACCGAAGCGGAATACGAGAACAGATTCCAGAGAGCCGTTTGTGatggagattttgaatttgtaagttttttatt-----------CCCATAATCTTCATTATAAATGTTCAT---ATGCAGTTACGAAACATTACACTGGATGAGCTgattagaagaaaagaaagtttGGATTCCGAAATGGAAGAGGAAATTCGAGAGCTGCAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1286421 208 -  4500979 tttcagtgaacacAGAAATGGAGTATGAGAATAGGTTCCAACGCGCCGTTGTCGACGGAGATTTTGAATTCGTAAGTCATTGTTTGGAAAGAATAACTAAGAA--------AAAAGTGACGTT---TTACAGCTGCGAAACATTACACTGGACGAATtgataagaagaaaagaaagtttagattcagaaatggaagaagagattcgtgaattacaaaga
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    54401 200 +   386604 ---CAGTGAACACTGAAGTCGAATATGAAAATAGGTTCCAGAGAGCCGTTGTCGAtggagattttgaatttgtaag----------ggaat-----catttgaatatgaTT-CAAATGATAATATATTTCAGCTGAGAAACATCACATTGGACGAGTTAATAAGACGAAAAGAGAGTTTGGATacagaaatggaagaggaaattCGCGAGTTGCAGAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2578297 206 +  4147112 TTTCAGTGAACACCGAGGTGGAGTATGAGAACAGGTTCCAACGAGCAGTTGTCGATGGAGATTTTGACTTTGTAAG--------Tagaaattttgacttttcagttttatt--aaatttcaat---tttcagttacgAAACATCACGCTGGACGAGTtgatcagaagaaaagaaagtctagattcagaaatggaagaggaaattcGTGAGTTGCAGAGA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  272915 210 -   375229 tTTCAGTGAATACCGAAGCCGAATATGAGAACCGATTCCAGCGTGCTGTTGTCGACGGGGATTTTGATTTTGTAAGAATTTGTACAGCAAA-----ATAGAGATTAAAGTGTGTAATATTTAT----TTCAGCTACGAAACATCACACTTGAAGAACTGATTAGAAGAAAAGAAAGTTTAGATTCGGAGATGGAGGAGGAGATTCGGGAGTTGCAAAGG
i caeJap4.Scaffold17084 C 0 C 0

a score=689.000000
s ce10.chrX             4343011 136 + 17718866 AGGTAAAATCTT--------------TTTTTTTTAATT--GGTTGAATTTGAGGAAATTTAATTCAAACACCTCAAAAAGCCGGAAATT--GAGATTTTT--AACAAAAAA------TCCTAAGCGAATTTTCTAGCTGG------------ATTTTTTGTGAGTTTACTGATT
s caeJap4.Scaffold17084  273125 174 -   375229 AGGTGAGTTCCTGAGAAAAATGGAAGTTGTTTAAAATCAGGGCtttttttGTGGATGTTTAAGCCATTCACCAATATTTCCTCGAAATTCAgtgatttttccaaaaaaaaaaagttgtccaaaaggagtacacgaggtggcggcaaatttaaaatttttttcaagttgctgatt
i caeJap4.Scaffold17084 C 0 I 1095
e caePb3.Scfld02_0      2578503   0 +  4147112 C
e cb4.chrX              9444600   0 + 21540570 C
e caeSp111.Scaffold622    54601   0 +   386604 C
e caeRem4.Crem_Contig0  1286629   0 -  4500979 C

a score=0.000000
s ce10.chrX             4343147 274 + 17718866 TAAACATCTAAAGGACAGTTTTATGAATCGCGAACTACTGCTATTTATAATTTTTAAGAAATAGTGATGCTGAAATTTTGCTCAGAATTTTTTTCTTTGATGCTTAAAATTCCATTCTCAAATTTAGGATATTTGAAGCTTTTGGCATCGAATGTTTTCAAAATGAGCCAACTTTTCTCTTTTTTTCTTACATTTTGGAGTCAAGAAAATTGATATTAAAATCCGCAACAGTGGCAATTCACGATTAAAGTCAAATACTAAAAAAAGAACAAAA
e caePb3.Scfld02_0      2578503   0 +  4147112 C
e caeJap4.Scaffold17084  273299 1095 -   375229 I
e cb4.chrX              9444600   0 + 21540570 C
e caeSp111.Scaffold622    54601   0 +   386604 C
e caeRem4.Crem_Contig0  1286629   0 -  4500979 C

a score=373.000000
s ce10.chrX             4343421 4 + 17718866 TTTC
s caeJap4.Scaffold17084  274394 4 -   375229 TTTC
i caeJap4.Scaffold17084 I 1095 C 0
e caePb3.Scfld02_0      2578503 0 +  4147112 C
e cb4.chrX              9444600 0 + 21540570 C
e caeSp111.Scaffold622    54601 0 +   386604 C
e caeRem4.Crem_Contig0  1286629 0 -  4500979 C

a score=132690.000000
s ce10.chrX             4343425 491 + 17718866  
s cb4.chrX              9444600 560 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1286629 524 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    54601 540 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2578503 558 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  274398 482 -   375229  
i caeJap4.Scaffold17084 C 0 I 27

a score=-5827.000000
s ce10.chrX             4343916 16 + 17718866 TG--CATGGCATCCTAGT
s cb4.chrX              9445160 18 + 21540570 TTTCCAACAGCTATCCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1287153 14 -  4500979 TC----ATGGCTTCCACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    55141 13 +   386604 TT-----TACATGGCatg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2579061 13 +  4147112 TT-----TGCAtgcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  274880 27 -   375229 I

a score=297328.000000
s ce10.chrX             4343932 584 + 17718866  
s cb4.chrX              9445178 520 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1287167 583 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    55154 546 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2579074 556 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  274907 526 -   375229  
i caeJap4.Scaffold17084 I 27 C 0

a score=-17212.000000
s ce10.chrX             4344516 111 + 17718866 AGGTCTTCTATTTTTTGAATTTTTGCTATAGCAGTTTTGCGAAAACCTGACACATCAATTTAAAGAAACATTCAGTTTTACTGGTCCCGCCACAATTTCAGTGATCTTTAT
s cb4.chrX              9445698  10 + 21540570 ----------------------ATGTT-------------------------------------------------------------------------------TTTCC
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold622    55700  39 +   386604 GAGTATTC----------ATTCTTATTATA-------------------------------------------AGTTAAGCTGCT-------------------TCTTTTT
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2579630  14 +  4147112 Gagt------------------ctatt-------------------------------------------------------------------------------tttct
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  275433  25 -   375229 ------------------ATGCTTATTACA--------------------------------------------------------------------TATTCATCTTaat
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1287750   0 -  4500979 C

a score=0.000000
s ce10.chrX             4344627 1 + 17718866 G
e caePb3.Scfld02_0      2579644 1 +  4147112 I
e caeJap4.Scaffold17084  275458 0 -   375229 C
e cb4.chrX              9445708 15 + 21540570 I
e caeSp111.Scaffold622    55739 1 +   386604 I
e caeRem4.Crem_Contig0  1287750 0 -  4500979 C

a score=-20430.000000
s ce10.chrX             4344628 110 + 17718866 AAATGTAAAATTCTACAGTGCACAGAGATTCTTGGATTTGAAATAGAATTTCCAACACCTGGAGTCACATTTCCGCTATATGTACATCTTCATAATAATAATTTCAATTT
s cb4.chrX              9445723  17 + 21540570 --------------------------------------tgaaaaattatt-------------------------------------------------------aatta
i cb4.chrX              I 15 I 3
s caeRem4.Crem_Contig0  1287750  35 -  4500979 ---------------------------------------GAGATATAATC--CAA----------------------------------CCACACTTGGaaccaaacatt
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2579645  28 +  4147112 ------------------------------------------aaactatt---------------------------------------cCATAATGATGATATTAATT-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  275458  16 -   375229 ---------------------------------------------------------------------------------------------atttctgttatttttt-
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    55739   1 +   386604 I

a score=649527.000000
s ce10.chrX             4344738 888 + 17718866  
s cb4.chrX              9445743 935 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1287788 888 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    55740 887 +   386604  
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2579673 907 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  275474 874 -   375229  
i caeJap4.Scaffold17084 C 0 I 571

a score=-3814.000000
s ce10.chrX             4345626 2 + 17718866 A-T
s cb4.chrX              9446678 1 + 21540570 T--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1288676 2 -  4500979 AT-
i caeRem4.Crem_Contig0  C 0 I 2294
s caeSp111.Scaffold622    56627 1 +   386604 T--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2580580 1 +  4147112 T--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  276348 571 -   375229 I

a score=1262.000000
s ce10.chrX             4345628 7 + 17718866 TATTATT
s cb4.chrX              9446679 7 + 21540570 CATTATT
i cb4.chrX              C 0 I 6682
s caeSp111.Scaffold622    56628 7 +   386604 CAGTGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2580581 7 +  4147112 TAATgat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  276348 571 -   375229 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=120.000000
s ce10.chrX             4345635 4 + 17718866 TCTA
s caeSp111.Scaffold622    56635 4 +   386604 TTCA
i caeSp111.Scaffold622  C 0 I 158
e caePb3.Scfld02_0      2580588 0 +  4147112 C
e caeJap4.Scaffold17084  276348 571 -   375229 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=685.000000
s ce10.chrX             4345639 46 + 17718866 TCCACTACAGCAGAATCACAGAACCACTAAAAAAACAAAAAAACTA
s caePb3.Scfld02_0      2580588 37 +  4147112 ---------ggaatatttgaaaaaaattaaaaaaaaatgaaaatta
i caePb3.Scfld02_0      C 0 I 231
e caeJap4.Scaffold17084  276348 571 -   375229 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=0.000000
s ce10.chrX             4345685 7590 + 17718866  
e caePb3.Scfld02_0      2580625  231 +  4147112 I
e caeJap4.Scaffold17084  276348  571 -   375229 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639  158 +   386604 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=1329.000000
s ce10.chrX             4353275 82 + 17718866 CATTTTTCATAAAAATTGTCTCATTGTATTTTGTAATCCAT-CCCTTATTATTCAATAATTTCCGTTTCAGTTGCGTCGTCAT
s caeJap4.Scaffold17084  276919 73 -   375229 cgtttttcctaaaa----taacATTGCAGATTGCTGtcaatgtctttaaaattCA------TCCATCACAGCTTCCTCGTCAA
i caeJap4.Scaffold17084 I 571 I 37
e caePb3.Scfld02_0      2580625 231 +  4147112 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=0.000000
s ce10.chrX             4353357 9 + 17718866 TATGGAAAC
e caePb3.Scfld02_0      2580625 231 +  4147112 I
e caeJap4.Scaffold17084  276992 37 -   375229 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I
e caeRem4.Crem_Contig0  1288678 2294 -  4500979 I

a score=561.000000
s ce10.chrX             4353366 27 + 17718866 CGCATTTAAAATCAAATTC------CTTTTTCC
s caeRem4.Crem_Contig0  1290972 33 -  4500979 CGCAGATAATATCTAATACATCCCGCTGCTTCC
i caeRem4.Crem_Contig0  I 2294 C 0
e caePb3.Scfld02_0      2580625 231 +  4147112 I
e caeJap4.Scaffold17084  276992 37 -   375229 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I

a score=-579.000000
s ce10.chrX             4353393 12 + 17718866 ATATCTCTAGTC-
s caeRem4.Crem_Contig0  1291005 12 -  4500979 GCGTCTTCACTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  277029 12 -   375229 ATATCCTT-TTCG
i caeJap4.Scaffold17084 I 37 C 0
e caePb3.Scfld02_0      2580625 231 +  4147112 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I

a score=4.000000
s ce10.chrX             4353405  7 + 17718866 TATCAA----A
s caeJap4.Scaffold17084  277041 11 -   375229 CATCAATGCAA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2580625 231 +  4147112 I
e cb4.chrX              9446686 6682 + 21540570 I
e caeSp111.Scaffold622    56639 158 +   386604 I
e caeRem4.Crem_Contig0  1291017  0 -  4500979 C

a score=184011.000000
s ce10.chrX             4353412 310 + 17718866 ATATCTCTTTTGACGTCACGGCGCACATTATGAAAAATCACCGATATCAT-AAGGGAGTGGCAAATATTCAGCGGAATTTGCATATTCACC---AGTGAATATCGGG-TTTTCAAG---CTGACCGCCCTTTTCAAAATTTAGAAACCCGTCTTAAAGAGTATATAAGGGAATCTCCTGATTAGCAATAATCATCCATTTGGTCACAATGGAAGGCAAAGAAACTGATCAGCATCGGTGAG----TTTTTTTTGTTTTTTTTTTC---CA------AAACTGATTTGATTTTCT---TATAGCCATATGCGCGTTGTCGTTATGGCAGCATGCA
s cb4.chrX              9453368 307 + 21540570 ATATCCCTTTT-ACGTCATCA-CcgatttatgaaaaatttccgATATCATAAAGGGAGTGGCAAATTATCAATGGAATTTGCATATTGCGTCGAAACTGATTTCGGG-TTTTCCAGGTTTCTCCCGCCTTTTTG--------AGAACCTGTTCTTGAGATTATATAAGACT-TCGCTCCATTAGCAACAATCATCCACTTGGTCACCATGGAAGGAAAAGATACTGATCAGCACCGGTTAG-----Tttatccactttttttt-----tagtatctaaatgtgttt--ttttgt---ttcagctaCATGCGCGTCGTTGTGTACGCAGCATGCT
i cb4.chrX              I 6682 C 0
s caeRem4.Crem_Contig0  1291017 304 -  4500979 ATATCTCTTTTGATGTCACAA-GCAACTTATGAAAAATCACCGTTATCAT-CTGGGAGTGGCAA---ATCGGAGGAATTTGCATATCTCCACGCAAcgaatttcgag-tttttaga---TGCCCCGCCTTTTTG--------GAAACCTGTTCTTATGATTATATAAGACT-TCTTTTGATTAGCAATAATCATCCATTTGGTCAACATGGAAGGAAAGGACACTGATCAGCATCGGtgagcttttttttttgatttttgttttctgatattaACTAAATAAAT---------T---TTAAGCCACATGCGCGCTGTCGTTTATTCGGCATGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    56797 296 +   386604 ATATCCCTTTTGACGTCACAA-GCAACTTATGAAAAATCACCGATATCATCAGGGGAGTGGCAAATTATCATTGGAATTTGCATAATGCCG-GCAGTGAATTTCGGG-TTTCCAGG---CTGCCCGCCTCATCG---------AAACCTGTTCAAATGATTATATAAGGCA-TTCTTTGATCAACAATAATCATCCATTCGGTCACAATGGAAGGCAAGGAAACTGATCAACATCGGTGAGCTTCTTTTATCAGCTgcttttctt---ta--------------at--ttttgt---tttagcCATATGCGCAATGTCGTTTTGGCTGCATGCA
i caeSp111.Scaffold622  I 158 I 1014
s caePb3.Scfld02_0      2580856 308 +  4147112 ATATCCCTTCTGACGTCACAT-ACAACTTATGAAAAATCATCGATATCAT-AAGGGAGTGGCAAATTATCAATTGAATTTGCATATTGCCG-GTAGTGAATTTCGGGTTTTCCAGG---CTGCCCGCCTCATCG---------AAACCTGTTCAAATGATTATATAAGGCACTCCTTCGATTAGCAATAACCATCCATTCGGTCACAATGGAAGGCAAGGAAACTGATCAACACCGGTGAG-TTTTTCgctcagcttttttttct---cag-----aagtttatat--ttctctctctttagCTATATGCGCAATGTTGTCTTGGCTGCATGCA
i caePb3.Scfld02_0      I 231 C 0
s caeJap4.Scaffold17084  277052 293 -   375229 ATATCCATTTTGACGTCACCG-GCAACTTATGAAAAATCACCGATATCAT-CAGGGAGTGGCGCATTATCAATGGAATTTGCATATCTCGT----Gcgaatttcttg-tttttagg---CTATCCGCCTTCTGA---------GAACCTGTCTAGGACACTATATAAACAA-TTCAGGGAGGTCCGATAATCATCCAATTGGTGACAATGGAAGGCAAAGAAACTGATCAACATCGGTGAG-----TTTTCtgcctttttttatt---ta------taaatcGT----CTTTTT---TACAGCTACATGCGCAAAGTCGTTATCTCGGCTTGCG
i caeJap4.Scaffold17084 C 0 C 0

a score=59773.000000
s ce10.chrX             4353722 118 + 17718866 CAGTTGCAACAATTTCTGTTTTCTCTGCAATTCTTGTGCTCCCAGTGCTCTTCACCTCTGTCCAGAGCCTTCAACAAGAAATTGATTTTGAAACCAATTTCTGCAAGGTTTGAAAATC
s cb4.chrX              9453675 108 + 21540570 CTGTTGCTATTGTTTCCGTTTTCTCGGCAATTCTTGTTGTGCCAATGCTTTTCACCTCTGTTCAAACTCTTCAACAAGAAATTATCTATGAAACCAACTTCTGCAAGG----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1291321 114 -  4500979 CTGTTGCAACTATTGCTGTCTTCTCGGCAATCATCGTTTTGCCAATGCTCTTCACTTCTATCCAATCTCTTCaacaagaaattgaattgGAGACCAACTACTGCAAGGT----agtat
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold629  6006677 105 - 33334924 CTGCAGCAGTTATTGC------TTCGGTTGTAACA---CTTCCAATGCTCTACAATTATGTTCAGTCGTTCCAATCTCATCTTATGGTTGAAACTGATTATTGCAAGgt----aaatt
i caeSp111.Scaffold629  n 1014 I 19
s caePb3.Scfld02_0      2581164 114 +  4147112 CCGTAGCAACCATTTCGGTCTTCTCGGCCATCATCGTTCTGCCAGTGCTGTTCACTTCAGTTCAAACTCTTCAGCAAGAGATTGAGTTGGAAACCAACTACTGCaaggt----aattt
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17084  277345 114 -   375229 TTGTTGCAACCATCTCGGTTTTCTCTGCCATCGTTGTTCTGCCTGTTCTATTCACCTCTGTGCAGAACCTCCAGCAGGAGATCGTCTTTGAGACTAACTACTGCAAGGTTTGTG----
i caeJap4.Scaffold17084 C 0 C 0

a score=-2836.000000
s ce10.chrX             4353840 34 + 17718866 -------------TTTAAACATTTTCCAAGTTTATCGTATTTTTTTC
s caeRem4.Crem_Contig0  1291448 23 -  4500979 -------------tctGAGAATTATT-GAATAATTTA----------
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold629  6006801 34 - 33334924 -------------tttaatcatttttctaatattttcctcttctttc
i caeSp111.Scaffold629  I 19 I 25
s caeJap4.Scaffold17084  277459 38 -   375229 TCAGAACAGTGCTTTGGAACATTAT--GAATCAttttttt-------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2581278 37 +  4147112 I
e cb4.chrX              9453783  0 + 21540570 C

a score=19069.000000
s ce10.chrX             4353874 20 + 17718866 AGATGCGCTCCCGCGATATG
s cb4.chrX              9453783 17 + 21540570 ---TCCGTTCTCGTGATATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1291471 20 -  4500979 AGCTCCGCTCCCGTGACATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  6006860 20 - 33334924 aggCTCGTTCTCGTGACATG
i caeSp111.Scaffold629  I 25 I 20
s caePb3.Scfld02_0      2581315 20 +  4147112 AGATGCGTTCCCGTGACATG
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17084  277497 20 -   375229 AGATGCGCTCCCGTGACATG
i caeJap4.Scaffold17084 C 0 C 0

a score=6155.000000
s ce10.chrX             4353894 14 + 17718866 CTTGTAAACCTGTA
s cb4.chrX              9453800 14 + 21540570 CTGAGAGACCTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1291491 14 -  4500979 ATGATGAACCTGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2581335 14 +  4147112 ATCATGAACTTGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  277517 14 -   375229 CTCATGAACTTGTA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold629  6006880 20 - 33334924 I

a score=672744.000000
s ce10.chrX             4353908 827 + 17718866  
s cb4.chrX              9453814 829 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1291505 845 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  6006900 775 - 33334924  
i caeSp111.Scaffold629  I 20 I 17522
s caePb3.Scfld02_0      2581349 784 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  277531 828 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=42646.000000
s ce10.chrX             4354735 32 + 17718866 ACCCCAAGAACCCCACCAGGATATTAATCTAT
s cb4.chrX              9454643 32 + 21540570 ACCCCAAGAACCCCACCAGGATATTAATTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1292350 32 -  4500979 ACCCCAAGAACCCCACCAGGAtattaatttat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    58107 32 +   386604 ACCCCAAGAACTCCACCAGGATATTAATTTAT
i caeSp111.Scaffold622  I 1014 C 0
s caePb3.Scfld02_0      2582133 32 +  4147112 ACCCCAAGAACCCCACCAGGGTATTAATTTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  278359 32 -   375229 ACCCCAAGAACCCCACCAGGCTATTAATTTAT
i caeJap4.Scaffold17084 C 0 I 3731

a score=14652.000000
s ce10.chrX             4354767 45 + 17718866 ATGTCGATTGTTTCTCTAAGTTACTGCATATA-CTTATAAATATTC
s cb4.chrX              9454675 42 + 21540570 GT---CTTTTTTATCCTAAGTTATTACAAGTG-TCTATAAGTATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1292382 42 -  4500979 at---ttttgtttctataaGTTATTACACGTA-CTCTTAAGTATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    58139 42 +   386604 AT---GATTATGTCTCTAAATTATTGCATCTA-CAAATAAATATTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2582165 43 +  4147112 GT---CATTGTTGTTTTAAGTTATTGCTTATACCCAATAAATATTC
i caePb3.Scfld02_0      C 0 I 843
e caeJap4.Scaffold17084  278391 3731 -   375229 I

a score=-2361.000000
s ce10.chrX             4354812 8 + 17718866 ------AACAGGAA
s cb4.chrX              9454717 8 + 21540570 -----GAATGAAA-
i cb4.chrX              C 0 I 6725
s caeRem4.Crem_Contig0  1292424 8 -  4500979 -----AAATAAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    58181 8 +   386604 CTTCAGAA------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I

a score=-810.000000
s ce10.chrX             4354820 4 + 17718866 ACTA---
s caeRem4.Crem_Contig0  1292432 4 -  4500979 CCTA---
i caeRem4.Crem_Contig0  C 0 I 278
s caeSp111.Scaffold622    58189 4 +   386604 ---ATCG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I

a score=-7.000000
s ce10.chrX             4354824 74 + 17718866 CCGTATTCGAAACTATTC------ACAGAGAAA-------TTGGTGTGTTATGCCAAGCAA-------AACAAAAAAGCCATTCATGAAC---ATTT
s caeSp111.Scaffold622    58193 92 +   386604 -tgtattc----ttatttttaaaaatagagaagCCTGCCTTTCGTCTAATATTCCATGCAATTTGTTTCACACACTAACTGTTCTTGGGCCAAATTC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1292436 278 -  4500979 I

a score=8226.000000
s ce10.chrX             4354898 162 + 17718866 TTTATTCAAAAGTA-----------------CAAGGTCAAA-----------AATTCGAAAACAGAACTTTAGACGTCAACAACTGGGCTGCTTGAAACATTTGAAGTGAAGAAACTTTGATCAATATGGTACTGACAAACAATTTCTCTCCAGGTGAATTGAATACGAAAAGTCAC--AGTTTCTGAAAAA
s caeRem4.Crem_Contig0  1292714 188 -  4500979 tttattcaaaaacaatgtcGGAAGCTTTCTTTGAAGTAAACCAGATGGTTGTACTCCAAAAGGC----TTCAAACATCAACCACTGGGCTGGATGGGATCAGTGGGACAAAGTAGCTCTCGTCGATTTCGTATCCCCAGACAAATTCTCGATAAGCGATGGTCAAGTTGAAGGCCACGAAGTTACTGAAAAG
i caeRem4.Crem_Contig0  I 278 C 0
s caeSp111.Scaffold622    58285 172 +   386604 ------TAAAGATAACAGGTGACGATTTATTGAGATtggaa-----------aatccaaaaacca---attaaACATCCACGGGAACATTAGTTGGAGTGATTGGAACAAAGTAACTCTCATCAATTTCATATTTGCAAATGATTTCGCTCAATGTGAAGGTGAAATGAAATGTGAcgaagtttctgaaaaa
i caeSp111.Scaffold622  C 0 I 29
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I

a score=316.000000
s ce10.chrX             4355060 8 + 17718866 A-CTGATAT
s caeRem4.Crem_Contig0  1292902 9 -  4500979 ACCTGATAT
i caeRem4.Crem_Contig0  C 0 I 22
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58457 29 +   386604 I

a score=0.000000
s ce10.chrX             4355068 396 + 17718866 GTGCATATAATATTTTCTAGGGAGAATTGCAAATTGACAACACTTTTTGATCGTTTTTTTTTCGAATTTTGAACATATTTTATTTAAGATTTTCACAGTTGGTTACCGAAATCAGAGTTTTTGCTTTTAAAACCAAAATGGCAGAATACGTTCTAAAAAAGGATCTAAAAAATCACGAAAAACAGCtgtggcagttcaaaaatcttgaaaaaacaatgcctattttctgctaaattctcaaacttttccaacttgtcagtgtcacacctAATATGTTCAGGTGAAGTCCACTGGCGTGAAATTCAAAAAAAAAGTTTAGAAGTCCTAGAAATGATAAACTAAAATCCACATAAAAATGTTAAAAATGTGAGCAAAAAGTGTTGTTCGTCATTTTTT
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58457  29 +   386604 I
e caeRem4.Crem_Contig0  1292911  22 -  4500979 I

a score=20245.000000
s ce10.chrX             4355464 243 + 17718866 CTTACAAAACAAGTCGGCTGAAAAGGCACACCATAATCAGTGACAAATTGAACGGCTCACAGATGAACATCAGAAAGTATTTGCAAGCATACTTTGCTAATTTTTTTGCCAACTGATTTAAGA---CAGAATACTGAGCTCCTGCACTTGCTCCCAC-TGTTTCTTGA--------TTT-GAATAGAAAAGGCTTTTATGCCAGTAATGCATCATAGAAATACTGATGAAACCGAGAAAAACTTGATAAATTTTGA
s caeRem4.Crem_Contig0  1292933 249 -  4500979 CTTACAGAACGATTCGGCTGAACAAGCACATCATGATGAGTGAGAGATTCAGGGGCTCCGTGATGAAGACGACGAAATAGAGTGTGGCTTGTTTTGCCATCTTCTTGACGAGGTGATTGAAGAATCCAGTATCAT------CCTCAATGTTTGTCTCGAATCCAGTCAAGCCCTTCTTT-GGGAGTGTGAGACTTTTGTGCCAGTAATAGACCATGGAAAGAGCAATCAGCACGAGTAACACTTGATAGATCTTGA
i caeRem4.Crem_Contig0  I 22 I 5063
s caeSp111.Scaffold622    58486 255 +   386604 CTTACAGAACAATCCGGCTGAACAAGCAAACCATGATGAGAGTGAGGTTGAATGGTTCGGTGATGAACATCAGGAAGTACAAAACCGCATGTCGAGCTACTTTCTTGAGAGTCAGATCAATGAAACCGGTAACTTCGTTTCCATCAGCATCCATCAC-AATCTCTTCGATATCTTCTTTCGGGAGCAAGAAGCTTTTGTGCCAGTAATAAATCATCGAGACACTAATTAAGAAGAGCATCACTTGATAAATCTTGA
i caeSp111.Scaffold622  I 29 C 0
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I

a score=378.000000
s ce10.chrX             4355707 77 + 17718866 TTTTCAGGGAAATTAACGATACTTCTTCGA----GAAGCATCTGGCTTTC------AGTTAAGATGCTATTAATTGACT--TTTTTTTG
s caeSp111.Scaffold622    58741 89 +   386604 ACTTCAGATTGAATGTAGAAACTTGTTCAACATTGACACGTTGAACTTTCTTTGAACGATGAGCTCCTCTCGTTTgatcgatttttttg
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2582208 843 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=808.000000
s ce10.chrX             4355784 9 + 17718866 AACGGAGAT
s caeSp111.Scaffold622    58830 9 +   386604 gaggagGAT
i caeSp111.Scaffold622  C 0 I 1117
s caePb3.Scfld02_0      2583051 9 +  4147112 aatgaagaa
i caePb3.Scfld02_0      I 843 C 0
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=2092.000000
s ce10.chrX             4355793 82 + 17718866 TTGTTTGAAAAGGAATCGAAAAATGGAGCATGGAAAGCAC------TCAGAGAAAGGTGCTTAAAAATGTTACCAAGGACAACATCTC
s caePb3.Scfld02_0      2583060 84 +  4147112 gttttcgaaaggaaaatgggaaa----gaatGAAGTGCTTGGCTTTTTCGAGAAGAGAGTTTGGGGATGTTTCCAAGGACAACATCCC
i caePb3.Scfld02_0      C 0 I 1053
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58839 1117 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=0.000000
s ce10.chrX             4355875 1415 + 17718866  
e caePb3.Scfld02_0      2583144 1053 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58839 1117 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=2985.000000
s ce10.chrX             4357290 119 + 17718866 GTTGTTTTTGGTGGAAGGAGGTTGAGCAATTGATTGAAGGCCTGaaaat-----------taattattattat----ttaaaaataaattCTTAGA-------------------AAGTCATAATTCACTTACCGGTGGGTGAGGGTCAAATG
s caePb3.Scfld02_0      2584197 149 +  4147112 GTTGTTGGCGGTGGCAAGAGTTTGACCAGTTCGTCGAAAGCCTGTAAATATATTTTCCGATAGCTAATCTTACCAACTTGaagat---tttttagttttccccCCGATGTATGGTCTGTCATC-TTCACTTACCGGTGGGTGAGCCTCAAATG
i caePb3.Scfld02_0      I 1053 I 1735
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58839 1117 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=0.000000
s ce10.chrX             4357409 1675 + 17718866  
e caePb3.Scfld02_0      2584346 1735 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    58839 1117 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=899.000000
s ce10.chrX             4359084 20 + 17718866 AAAAAAGAGTCTACCGAAAA
s caeSp111.Scaffold622    59956 20 +   386604 AAAAGAGACCTCATCGAAAG
i caeSp111.Scaffold622  I 1117 C 0
e caePb3.Scfld02_0      2584346 1735 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=23492.000000
s ce10.chrX             4359104 221 + 17718866 GTGTTAATTGATAACACCTATTACTTTAATCTATTCA--AAAATTTCCAATTCATTAGATAATGTTCAGTTTTTGCATTATCAGTAAAATATCACATTTTTTATGGCTGGAGAACAAAAAAT-ATGAGCCTGTCAATCA-TTTTCATTCGTTTTCGAAATTGTATTAATTTGCACTATCAGTTATAAATTGAGTGGAGAGCTCTACGTGTTTAACTCGAATGGGG
s caeSp111.Scaffold622    59976 208 +   386604 --GTGGAATGATGGCCACAAAGAATCTAATCTATTGG--AAA-----CAAGTAATTAGATAATGT--GTTCTATGCTTTATCAGCAACTCCTCAATAGTTTTATGACAggtgaacaaaaaaa-acgagcCTGTCAATCATTTTCCGATTTATATTAGAC--GTATC-ATTCGTATTATCAGTTTCCGAATCGATGAAGAGCTCTACATGTTTAACTCAAAGGA--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2586081 216 +  4147112 GTATGGAATGATAACCACTGAAAGTCTAATCTATTCGTCAAA-----AAAGTAATTAGATAATgttcttttctcgttttatcAGCAACACACCACAGTTTTTATTGCCGGTGAACGAAAAAATATGAGCCTGTCAATCA-TTCCTATTTCATATTGAAA--GCATC-ATTCACACTATCAGtattaaaatcaataaatagcTCTACGTGATTAACTCAAAGGGGG
i caePb3.Scfld02_0      I 1735 I 4273
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=519.000000
s ce10.chrX             4359325 9 + 17718866 GGCAAAGAA
s caeSp111.Scaffold622    60184 9 +   386604 GGCAATGGA
i caeSp111.Scaffold622  C 0 I 4763
e caePb3.Scfld02_0      2586297 4273 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=0.000000
s ce10.chrX             4359334 2529 + 17718866  
e caePb3.Scfld02_0      2586297 4273 +  4147112 I
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    60193 4763 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=917.000000
s ce10.chrX             4361863 32 + 17718866 AAAACCACAATATCAAAAATTTATGAATATTT
s caePb3.Scfld02_0      2590570 31 +  4147112 AAAGccacaaaatcaaaacacaaagTA-ATTT
i caePb3.Scfld02_0      I 4273 C 0
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e cb4.chrX              9454725 6725 + 21540570 I
e caeSp111.Scaffold622    60193 4763 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=100.000000
s ce10.chrX             4361895 1 + 17718866 C
s cb4.chrX              9461450 1 + 21540570 C
i cb4.chrX              I 6725 C 0
e caePb3.Scfld02_0      2590601 0 +  4147112 C
e caeJap4.Scaffold17084  278391 3731 -   375229 I
e caeSp111.Scaffold622    60193 4763 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=-2487.000000
s ce10.chrX             4361896 3 + 17718866 TAT--
s cb4.chrX              9461451 3 + 21540570 TAT--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2590601 1 +  4147112 -G---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  282122 3 -   375229 --TAC
i caeJap4.Scaffold17084 I 3731 C 0
e caeSp111.Scaffold622    60193 4763 +   386604 I
e caeRem4.Crem_Contig0  1293182 5063 -  4500979 I

a score=90.000000
s ce10.chrX             4361899 1 + 17718866 A
s cb4.chrX              9461454 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1298245 1 -  4500979 A
i caeRem4.Crem_Contig0  I 5063 C 0
s caePb3.Scfld02_0      2590602 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  282125 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    60193 4763 +   386604 I

a score=54261.000000
s ce10.chrX             4361900 156 + 17718866 ACTAATCTTCATCACGAAGAACCTTTCCGTTTATCTTGAATCTCACGATCGTTGGCTTCTTCGGCTCTGCCTGTACGTTGTCTCGCCGGTGAGCACGGTTTGCATACTCGATGCGCGG---ATTGCGGGGTGTTACTGACAATGAGTCAAGCCAACTCA
s cb4.chrX              9461455 156 + 21540570 AAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGG---ATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1298246 159 -  4500979 ATTATTCGTCGTCTCCCAAAACCTTTCCGTCGACTTTGAATCTGACGACGGTTGCCTTCCTCGGTGCCGACTCGATGTCCTCATCGCGGTGAGTACGATTGGCAATCTCGATGCGTGGCACATGACGTTGAGTCAAGGCGAGCGAATCGCACCATTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    64956 156 +   386604 attatTCCTCGTCCTCCAACACCCTGCCATCTATCACGAATCTGACGATGGTAGCCTTTTTTGGAGCCGATTCCACATCATCATTGTTGTGGGCACGGTTGGCATACTCGACACGCGT---GTTACGTGTCGCCATTGTCACCGACTCAAGCcaattga
i caeSp111.Scaffold622  I 4763 I 6
s caePb3.Scfld02_0      2590603 156 +  4147112 ATTAATCATCGTTACCGAGAATCTTTCCATCGACCACGAATCTCACGACGGTTGCCTGCTTTGGCGCCGATTCCACGTCATCCATCTGATGAGCACGGTTGGCATATTCGACACGGAC---GTTGTTGGGAGATAACGCGAACGAGTCGTACCAAGTGA
i caePb3.Scfld02_0      C 0 I 740
s caeJap4.Scaffold17084  282126 153 -   375229 ---ACATATCCTCCTCAACAACAACTCCTTCAATTTGAAATCGAACCACTGTAGCTTTTTTCGGCCCGGTGCCAGCGCTATCACGACGATAAATTCGATTCGCTTTTGCCACGCGAGC---GTTCGTAACTCTTAGATTGAGAGCATCTTTCCAGTCCA
i caeJap4.Scaffold17084 C 0 C 0

a score=-21465.000000
s ce10.chrX             4362056 240 + 17718866 TCCTGCGACGAAAATGTCGATCGGAGACAATGAGAATGTAGAGAACTCTGAAAG----------------------------AATGAA----TTATTCATAAGTCATAGTAAAAAGAGCTACTTTCAAAA--------TCTCACAAGAAAAATATGACAA---CTCCGAGCAACACATACATGGATTCCACTTGCGCA------ACTTGATTGGTGTTGTCGGT--GGACTGCACGAATACGACTGGCGTCATTTCTC--TAGAAACAAAAA--GCGAAGTGGT----ATGTTGAGCTA-
s cb4.chrX              9461611 264 + 21540570 GTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGAtggttctgaaagtttttttttcagttttttttttcaaaaaaattcggaatgcGTTAAAGA-------CTAATCAA-----GATAAGCA--------ACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAAT---CGATTCGAAATCTTCC-----TTAGCCATG--CTG-GCGACGACAACAACTGGAGTCATGACGCtgtagaaacaaaaaagatgaagTGGT----ATGCGTGTGTG-
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1298405 232 -  4500979 GGCCCCAAACGTAACGACGGTAGAAAACGATGGCGAAGTaaatagaactgaaaat---------------------------aattagg---GGGTTAGTGA-------TCGAATGG-----TATTATCAAATGCATCACTTACAAGAAGAAAGAGGCTA---TTCCGAAGACAAGAAGCTTTACGTCAAC---CTTT------TCTTCC--GG-TTTTGCATT--CGGTGAGACCATTACGACCGGCGTCATGTTGC--TAGAAACAAGAA--TTGAAGTGGT----ATGCAGATATA-
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold622    65118 226 +   386604 ------ttctgaagCGACGGTAGAAGACCATTGCCAGATAAAggagactgaaaaaattctt-----------------------cttg----ATATTAATGA------GTTAATTGA-----TATCTATA--------TCTCACCAGAAGAAAACACCAA---TTCCTAGAAGCATCAAAACTCCTTCGAC---ACCT------TCTTCGTCGTCTTTGGTAGT--TGAAGGGACGATCACAACCGGCGTCATGTTGC--TAGAACGAAAGAA-TTGAAGTGGT----ATGTCGAGCCG-
i caeSp111.Scaffold622  I 6 I 6
s caePb3.Scfld02_0      2591499 227 +  4147112 ------TCTTGCATCGGCGGTAGAGCACGATGGCCAAGTAGATCAATCTGAAGA------------------------------TTCG----AGATTAATTACTGTTcgtcatttgaaaatttattatta--------ACTCACGCGAAGAAAGCAGTAA---CGGCTCCAATAACGTACATTGGATCGA------CT------TTTTCA--GGCTCCGGTTGTCCTCCTCTCACAATCACAACTGGCGTCATCGAGC--TAAAGAGAAATGT-TTGAAGTGGT----ATAGTGAGCCG-
i caePb3.Scfld02_0      I 740 I 40
s caeJap4.Scaffold17084  282279 220 -   375229 TGTTGAGAAAGAAGTGTCGGTAATTGACGATGCCAATGTAAAACGCCCTGAATT--------------------------------------GAGTTAACGGGGCTCGGTGAACATGAAACGTGTTA-----------ACTTACGTCATGAGAATCACAA---GAAGCAAAAGCATGATCAACGGGTCCAA-----GT------TTTCCG--AGTACTTTCTGT----------TGAATAAAAACGCAGGCATGTT-C--TGGAAACAAAAC--ATCAGATGGTTGGAATGTAAGAGCAG
i caeJap4.Scaffold17084 C 0 C 0

a score=1030.000000
s ce10.chrX             4362296 35 + 17718866 CTACACGTCTCTGTTTTGTCGTGGTTCAAGGACTT
s cb4.chrX              9461888 34 + 21540570 TTGCTCGGCGCCCCAGCGGC-CGACTCGAAGACTT
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0  1298656 20 -  4500979 CCGCCCGGC---------------CTCGAGGACTT
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold622    65350 30 +   386604 TCGCTCGGCGCC----AGGC-CAACTCGAGgactt
i caeSp111.Scaffold622  I 6 C 0
s caeJap4.Scaffold17084  282499 33 -   375229 --ACTTATGTTAGCATCTTCCTGATTTAAAGACTT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2591726 40 +  4147112 I

a score=35023.000000
s ce10.chrX             4362331 66 + 17718866 TTTTTTGGCGTGGC-----ACATAAGATCATAAATTTACCCCCTTAT-TATTTATACTC-------TTTCCATGACAAC
s cb4.chrX              9461922 65 + 21540570 ---TTTTGT-TGGC-----ATTCAAGGTCGTAAATTTACCCCTTTAT-----TACACTCCTAGACATTCCCATGACAAC
i cb4.chrX              C 0 I 1874
s caeRem4.Crem_Contig0  1298676 64 -  4500979 ---TTTTGCGTGTC-----GCACAAGGTCGTAAATTTACCCCCTCTTATGCATATACTC-------TTTCCATGACAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    65380 66 +   386604 ttttttcgcatGGC-----GCACAAAGTCGTAAATTTACCCCCTTAT-TATTCATATAT-------TTTCCATGACAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2591766 57 +  4147112 tttttttGCATGTC-----ACACAAGGTCGTAAATTTACTC----------TTATTTGC-------TTTCCATGACAAC
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17084  282532 68 -   375229 ---TTCGGAGGGGCTCAGAGCACAAGGTCGTAAATTCAACCCTCTTA-TTATGGTCCTT-------CTTCCATGACAAC
i caeJap4.Scaffold17084 C 0 C 0

a score=1010.000000
s ce10.chrX             4362397 2 + 17718866 CA
s caeRem4.Crem_Contig0  1298740 2 -  4500979 CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    65446 2 +   386604 CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2591823 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  282600 2 -   375229 CA
i caeJap4.Scaffold17084 C 0 I 1115
e cb4.chrX              9461987 1874 + 21540570 I

a score=-265.000000
s ce10.chrX             4362399 1 + 17718866 G
s caeRem4.Crem_Contig0  1298742 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 1608
s caeSp111.Scaffold622    65448 1 +   386604 T
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2591825 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e cb4.chrX              9461987 1874 + 21540570 I

a score=-207.000000
s ce10.chrX             4362400 4 + 17718866 GAGA
s caeSp111.Scaffold622    65449 4 +   386604 TGTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2591826 4 +  4147112 TAGA
i caePb3.Scfld02_0      C 0 I 2538
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e cb4.chrX              9461987 1874 + 21540570 I
e caeRem4.Crem_Contig0  1298743 1608 -  4500979 I

a score=-1494.000000
s ce10.chrX             4362404 877 + 17718866  
s caeSp111.Scaffold622    65453 807 +   386604  
i caeSp111.Scaffold622  C 0 I 153
e caePb3.Scfld02_0      2591830 2538 +  4147112 I
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e cb4.chrX              9461987 1874 + 21540570 I
e caeRem4.Crem_Contig0  1298743 1608 -  4500979 I

a score=0.000000
s ce10.chrX             4363281 90 + 17718866 AAACGGAGTGACGGAATCGCAACTGATGCTGTAGGCGGAGCTCTCATTAATTGAGTAGGTTCTCGAATGTTTGGACCACATTGGCAGAGA
e caePb3.Scfld02_0      2591830 2538 +  4147112 I
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e cb4.chrX              9461987 1874 + 21540570 I
e caeSp111.Scaffold622    66260 153 +   386604 I
e caeRem4.Crem_Contig0  1298743 1608 -  4500979 I

a score=-2130.000000
s ce10.chrX             4363371 188 + 17718866 GTTGATAGGGAGGGG--------------------------------GAGACCGTTTGAAG------------------GAGACTGT---TTTAATAGGATGACGCATAGAAA-----------------------AAATGTTCCACTATTTTAATGATTACATTGCTAGAAA--------AAAAAGAAAAAC-----AAATACAATAAACCATTATTAGTATTTTATGAA-------ACTTTCAAATC----------------------AATAAAGCGGCGCAACTGAGCAAATCGGTTAGAAA
s caeSp111.Scaffold622    66413 299 +   386604 GTGGAGGGGGAGGGGAGGAAGAGGGCGAGGAGAATACGGAAAGGTACGCGACCGTCGGCAGTGTGCATCATAAACAGACGACAGTGTGCATCATATAACATGAACCATGAGAAGTCGGACGTaaaatgaacatttgaaatacTCCGAAA---CAAAGATTTTGTTGTCATAAACGGTTTTCAGGCAGAAAGTCACTGAAAAGTTGGGAACCGAAAATAGGTCTTTTATTAACACTAACATTTTCAAACCGTAaagttttattcagaaaaaaaagaaagtggaaaaagatGTCGAATC----ATAAA
i caeSp111.Scaffold622  I 153 C 0
e caePb3.Scfld02_0      2591830 2538 +  4147112 I
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e cb4.chrX              9461987 1874 + 21540570 I
e caeRem4.Crem_Contig0  1298743 1608 -  4500979 I

a score=-724.000000
s ce10.chrX             4363559 12 + 17718866 ---ATCGAAGTACTA
s cb4.chrX              9463861 12 + 21540570 ---atcgaatttttg
i cb4.chrX              I 1874 C 0
s caeSp111.Scaffold622    66712 12 +   386604 ATGAGATAATTT---
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2591830 2538 +  4147112 I
e caeJap4.Scaffold17084  282602 1115 -   375229 I
e caeRem4.Crem_Contig0  1298743 1608 -  4500979 I

a score=1131.000000
s ce10.chrX             4363571 8 + 17718866 AAAATTAT
s cb4.chrX              9463873 8 + 21540570 gaaatctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1300351 8 -  4500979 AAAATCGT
i caeRem4.Crem_Contig0  I 1608 C 0
s caeSp111.Scaffold622    66724 8 +   386604 TTAATAGT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2591830 2538 +  4147112 I
e caeJap4.Scaffold17084  282602 1115 -   375229 I

a score=5529.000000
s ce10.chrX             4363579 15 + 17718866 AATTATACATCAATC
s cb4.chrX              9463881 13 + 21540570 --ttAAAAGTCAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1300359 13 -  4500979 --TTAGAAGTCAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    66732 15 +   386604 GTTTAGAAATCAGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2594368 15 +  4147112 aatcaaaaatcatat
i caePb3.Scfld02_0      I 2538 C 0
e caeJap4.Scaffold17084  282602 1115 -   375229 I

a score=54833.000000
s ce10.chrX             4363594 270 + 17718866 TCCTGAGAGCCTTCCCGCACAATACTCAACTGTTTTCCATAGGCATATCTCGGAAAGAAGATCACTTTTGAAGTGTCGATTTGAGTCGTCGGAATGTCAATGACTGCGATGGAATCCAA------CCCATTTCCTACCACCATATCAATATTCCGCAACTTTTCTGTAGTTGCTCGCCGG-------------ACATAGCTGCTATTGATGTTGCTCAGGAACACGAACAGGATTCTGAAAA---------------GGTAATAA-------TTTAGATC---------------------GCCGTAATTT---AAGGAACAACCTACATCATGA
s cb4.chrX              9463894 264 + 21540570 TCTTGAGAGACTTCGCGGACTACACTGAGTTGCTTCTTGTAACCT------GGAAGCCAGAAGACTTTGGAGGTGTCAATCTCGTATGTTGGAATCTCCAATACGGCAATAGAATCTGA------TCCATTGTCGACAACCATCTCAATATGACGGAATTTTTCTGTGTTAACTCGACGG-------------AACCAGTCGCTGTTGATGTTGCTGAGAGTTATCAGGAGCAGTCTCAA-----------------AACCAAAGTAGttgaatttgaac---------------------tttttgaa--------aagagtCTTACaacatga
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1300372 301 -  4500979 TCTTGAGAATCTTCACGGACAACACTGAGTTGGTTTCTGAAGCCA------GGGATGAAGAATGCCCTTGAAGTGTTGATTTCGTTGTTTGGGATATCCAAGACAACAATTGACTCTAG------TCCCGTGTCCACCACCATATCAATGTGACGGTGTTTCTCGGTAGTTGCAAGACGG-------------AAGCTACTGCTGTTGATGTTGCTGAGAATGACGAAGAGAATTctaaaatcactatttttgtattAATCGAAG-AGATAAAATAGATCATGTGTGTCACCACATCATCTTCTGTTCA--------AGACAACTTACAGCATAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    66747 267 +   386604 TCCTGGGAAACTTCACGAACAATACTCAGTTGTTTTCCGTAGCCA------GGAATATAGAAAGCCTTTGACGTGTTGATTGTGTTTGTCGGAATTTCGAGAACTGCCACTGAATCACATTCCAATCCATAGTCAATGTCCATGTCAATATGTTGAAATGTCTGCGTGGTTGCCTTCCGA-------------TAACAGCTTCTGTTGATATTGCTGAGGAAAACGAACAATATCCTGAAAT---------------AGTTGAAA-GT----GTTAGATA---------------------ACCGTTTC--------GTCCAACTTACAGCATGA
i caeSp111.Scaffold622  C 0 I 2930
s caePb3.Scfld02_0      2594383 271 +  4147112 tccTGTGAAACCTCACGAACAACACTTAGCTGCTTTCTATATCCG------GGGAAATAGAATGCTGGAGAGGTGTCAGTATCGTAGGTTGGGAGTTGGAAAACGGCCAAAGGATCGTA---------ACCGTTGTTCTCAATATCAATCT----CATTATCTTCTTGCTTCTCATCAGAAATACCAAAACCGAAGTAGTCGCTATTGATATTGCTGAGAATGGCGAAGAGAACTCTGAAAG---------------AATATCAA-ATTCTGATTAGATA---------------------TGAATTCC--------CAATAACTCACAACATTG
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  283717 271 -   375229 TCCTGCGAAACCTCACGGACCACACTCAACTGCTTTCCAAAAACACTCCTAGGCACAAACTTCGTTTCGGAAAAGTTGACCTGACACGAATTCACGTTCATAACCTCCATTGCTTCACG------TTTCGCATTTATTACAGCTTCCATACGCCTATTCTGCTCAATGACAGCGCGGCGG-------------TATTTATCACTATTTATATGGTAGAGGATAACGAAGAGGAGTCTGTA-----------------AAACCAAC-------ATTAAAAC---------------------TTTTTACTTTTTACTGCGAAAACTTACATCATTC
i caeJap4.Scaffold17084 I 1115 C 0

a score=2780.000000
s ce10.chrX             4363864 15 + 17718866 ---CCACGAAAAAAATAA
s cb4.chrX              9464161 12 + 21540570 ---tcacaaatacAA---
i cb4.chrX              I 3 I 50541
s caeRem4.Crem_Contig0  1300676 12 -  4500979 ---CTATGAAACCAA---
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      2594657 15 +  4147112 ---TCACAAAGACAATAA
i caePb3.Scfld02_0      I 3 I 6
s caeJap4.Scaffold17084  283988 15 -   375229 CTGTCACAAAAACAA---
i caeJap4.Scaffold17084 C 0 I 177
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=-1184.000000
s ce10.chrX             4363879 36 + 17718866 TGATGTGAGCAACGAAATTTCGTTGCGGCGATTTCT
s caeRem4.Crem_Contig0  1300688 36 -  4500979 TGATGAAGATGGCGTATTTGTTTTTCTGCGACGTCT
i caeRem4.Crem_Contig0  C 0 I 271
s caePb3.Scfld02_0      2594678 29 +  4147112 TGATATAGCCACGAGATTGGTTGGTATCC-------
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17084  284003 177 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=1131.000000
s ce10.chrX             4363915 21 + 17718866 GGGATCCAGAAAATGCGGCTG
s caePb3.Scfld02_0      2594707 19 +  4147112 --GATTCAGAGAGTGCAGCCG
i caePb3.Scfld02_0      C 0 I 575
e caeJap4.Scaffold17084  284003 177 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1300724 271 -  4500979 I

a score=0.000000
s ce10.chrX             4363936 222 + 17718866 CGGGCAGCAGAAGGGACTCAAGTACAAGCTGCTTGTCGGCAATGTTTTGGGCATTTTGCGTTGTATTTGGTAGATTTGTGGTTGGTTCATTTGTGGTAGGTGATGGCACAACAGCTGAAAACGGTATTGAACTGGTTGTAGAAGGTTCTGCGTAGAAATCGAATGGATTCTCTTCTTCAATTTCGTGGAGCAGATTTGCTGGTGATCCGTCGTGGTCCTTTG
e caePb3.Scfld02_0      2594726 575 +  4147112 I
e caeJap4.Scaffold17084  284003 177 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1300724 271 -  4500979 I

a score=2369.000000
s ce10.chrX             4364158 34 + 17718866 TGAACATTGAGTTATCCGCAACGTACAACTGGAA
s caeJap4.Scaffold17084  284180 34 -   375229 TGAACATTGAGTTGTCCGCTACATACAGCTAAAA
i caeJap4.Scaffold17084 I 177 I 4742
e caePb3.Scfld02_0      2594726 575 +  4147112 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1300724 271 -  4500979 I

a score=0.000000
s ce10.chrX             4364192 593 + 17718866  
e caePb3.Scfld02_0      2594726 575 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1300724 271 -  4500979 I

a score=1717.000000
s ce10.chrX             4364785 213 + 17718866 cttaCCGTAAAGAGGTCCTTATTCAAACAATTCGTCGGTAACGTCATCGCGTATAGCATGATCAATAAAATGAAGATTTTCATCACCTCCTGCTGACCATGAAATTGGGGTCGAATGCTCTAAATCTTCAGTGAGAAAAGGTTCTGTAAAAGTGCGCTGTTTTTAATGGAAACATTGATAGAAAATTTCCCCGAAATACGACAGATGTAGGAA-------
s caeRem4.Crem_Contig0  1300995 208 -  4500979 CTCACCGCATAGAAATCTCTGTGCAGACACTGTACTGGATTCGTCATCATGAAGAAGATGACTAGAATGATGTGGGACTTCATTTCCACTACTCGAACAAAGATTTTCTGTGGGATGAAGCAATCTTCTGGTGATCAAA----CTGTAAACCAGC-TAGTTTTTATACGactttttaatcgaaaatttc-------taaaatgaatTTTGGGAGCCCTCG
i caeRem4.Crem_Contig0  I 271 C 0
e caePb3.Scfld02_0      2594726 575 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=7484.000000
s ce10.chrX             4364998 103 + 17718866 TGTAGTGGAAATAGTATATGAAGTTTCAGAAGAAAACAGTCAGATTGAAAACATCTGTTGTCACCGACC--CTCGTGAGATTT---GTTATCGTCA-GACTCAAAAAAT
s caeRem4.Crem_Contig0  1301203 101 -  4500979 TGTCTTGGAAATAGTATACGATTTGTTAGAAGAAGACTATCAGATTCAAAACATTGG--GTTCGTGCCA---TCACGAGGTTT---CTGATCATCGTTTCTCAAATAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2595301 103 +  4147112 TGGAGTGGAAATAGTACACTTTATCGTAGAGAAAAACTGTCAGAACGACAGCAGATG--GCCCCCGACGGACTCACGAGGTTTGTCTTAATCATCA----TCGAAGAAT
i caePb3.Scfld02_0      I 575 I 3402
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=422.000000
s ce10.chrX             4365101 7 + 17718866 AATTCGC
s caeRem4.Crem_Contig0  1301304 5 -  4500979 --TTCGC
i caeRem4.Crem_Contig0  C 0 I 2187
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=0.000000
s ce10.chrX             4365108 1305 + 17718866  
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1301309 2187 -  4500979 I

a score=3612.000000
s ce10.chrX             4366413 264 + 17718866 TCTCTGTGTTTCTGTGC-GCCTCTTTGACTGTATTCATCACTCCGTTTATTGCCCAGATATTCGTCACTCGCTGCTCATCACGGGGCAAT-----------GCACAGATTGAGTAGATG-------GAAGAAAATTGGCAGATG-----------CTATATGCGCACAAAAAAATGTTGGAAAGGGAACAT---GAAAAAGTGGTGAA----GAGGGCAAGGGGGA------TTGGAGGC---GAAGAGCAAATACTGTGTAA-AAAACACATCA----AAAACATAAACCTCTATTCTTAATTGATTGAGAGAC
s caeRem4.Crem_Contig0  1303496 304 -  4500979 TCTCCTTTCCTCTTTGCCACCTCCCGGCGAGTAATTATCTCTC-GTCCTCCACGCAGATGTTTGTTGTTCGATAATGA--ACGGAGCaaaaaaaGGTGAGAGGAGAGTTTGGACAGATGTTCTTCAgatggaaattgg-aaatgaagaagttcAGCTATATAC-------AGGAAGTctcaaagtgaaaattggggaaaactgataaaaaccgaaggaagtgagaaaaaagtttggaagccgaaaagACCAGACAATGTGTAACAAAATCCACCAGAAGAAAACATAAAGCACTATATCTAATTGATAGGGAGAC
i caeRem4.Crem_Contig0  I 2187 I 4252
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=0.000000
s ce10.chrX             4366677 450 + 17718866 TTGCAAGTATGTACTGGCCGAGCCAATAATCTATGAGTGCATAGATTCAAACTCAGTAAACAATTACAATTTGAATTTGCATGAGTCGCTGCTCAGTGTGATACGGAGCCATTGAATTCTCTGAGCAGCGACGCTTTTAAAACAAAATAATTCGAGTTTGTTGATATATAGAGAATGTTTTTGTAATGTCTGGAAATAATTCTATAACTGGATACTACACAACAGTACGAAAAAAAGGGACACATGACAAAAACCTATTGATCTAATTTTCGTATATATTGCAAATTGGGGCTAAATGGAATCATTTTGAAATTGCCAATTTATTCAGTAATAACTTTATACATATAAAAATTAAACACAAACTTATGTTCTCTCTAGGTTTCAATGATAATTATGACAATTTATTGAAATGTGTGGTATGATTATGCGGGTTATAGCAATTGGGAAAAT
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I
e caeRem4.Crem_Contig0  1303800 4252 -  4500979 I

a score=259.000000
s ce10.chrX             4367127 5 + 17718866 AATAC
s caeRem4.Crem_Contig0  1308052 5 -  4500979 AAGAC
i caeRem4.Crem_Contig0  I 4252 C 0
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I
e caeSp111.Scaffold622    67014 2930 +   386604 I

a score=391.000000
s ce10.chrX             4367132 3 + 17718866 AAT
s caeRem4.Crem_Contig0  1308057 3 -  4500979 TAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    69944 3 +   386604 aat
i caeSp111.Scaffold622  I 2930 C 0
e caePb3.Scfld02_0      2595404 3402 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I

a score=8391.000000
s ce10.chrX             4367135 120 + 17718866 AAGACACTTAAACGCGTGAATTGTTGATAGGAGCTCGTGACAGCAATGGTAGTCTTCCTGGTAATGGGTCGTTAGTTGTTCCAAGTGATGCTAGGGGTATAGACCCTTGAGCGTTCTCAG
s caeRem4.Crem_Contig0  1308060 112 -  4500979 --------CAGACACGCGTGTCCTGCTGCGGAGCGCTTGGAAGCAGTGGAAGTCTTCGAGGTAGTTGATTATTTTGAGTATTTATTGACGCCAGAGGGATGGCTCCTAGTCCATCTCCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    69947 117 +   386604 --gaga-ttagACATTTGAGTTATCATGAGGAGCACGAGAGAGTAGTGGGAGTCTCCCTGGTAAACGGTTGTGATTGGTTCGAAGAGGAACCATTGGGATCGCTCCCCTGCCCTCGACGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2598806 120 +  4147112 AAGAGAGTTAGACTTGAGATTGAGTGTGAGGAGAGCGGGATAGTAACGGCAATCTGCCTGGAAGTTGATGGTGGCTTCCACGCAACGGCTGTAGCTCGACGGCGTCCTGAGCTTCCTCAT
i caePb3.Scfld02_0      I 3402 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9464173 50541 + 21540570 I

a score=37954.000000
s ce10.chrX             4367255 196 + 17718866 CGTCCTCATCTCCTTCCAGCTCTGGCCGGCAGCAACTTCCTCTCCGTCCACAGCAACCGTACTTTTGCATGATGTAGTCTACCAAAAAACCAATGCTGGAAAT--------------------TCAAAAATGTTC-AT----------------TTTGTT------------TTTTAAAAGACTCCTGAAAACTTTGTTCTCACCTGAGACACGAGAGGACAACAACCAAAAAAATGAGCATCGG
s cb4.chrX              9514714 185 + 21540570 CGTCGTTCTGTGCCTCGAGAGCTGGAAGACAGCATCCTCCTGGACGTCCGCAGCACCCGTACTTGCGCATGACGTAGTCAACAACGAATCCGATCCTGTAA----------------------TCGATAATATTG-------------------ATCATCTGACG-------aacgaaaaa-----ttaaaac-------ttacagaaaaagcgagaccaagaaaacaaaaaagaagatcaCTGG
i cb4.chrX              I 50541 I 1765
s caeRem4.Crem_Contig0  1308172 238 -  4500979 CGCCATCAGGACGCTCTTGCTCCGGCCTGCAGCATCCACCACGACGACCACAGCACCCGTGTTTTTGCATAATGTAGTCGACCAGGAAGCCAATActgtaaaaatgagaatgttTCAAAGAACTCAAAAGTTTTGCATAAATATTCTCATCAAAATTGTTTGATGTGaaagtgatgaaaaaactAGTAATCAC-------TCACATGAGGCACGAAATAACAACGACCACAAAGATGATCATAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    70064 187 +   386604 TTGCTTCGTCGCCTTCAATTTCCGGGCGACAGCAACCTCCTTCGCGACCGCAGCAACCGTATTTTTGCATGATGAAGTCGATTAAGAAGCCGATgctaaaaatgg-----------------------aatattgTAT----------------ATCGGT------------GATATGGAAATTCGATGAAAC-------TTACATGAGACAAGAGAGAACgacgaaaagaaagatgatCATTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2598926 186 +  4147112 CGCCATTCCCAGCCTTACGCTCCCGACGACAGCATCCCCCTTTGCGACCGCAGCAGCCGAACTTCTGCATTATGTAGTCCACCAGAAAACCgatgctgaaaatgt---------------------------ttttag----------------tttAATTG----------GGTAACTAGTTTCTAGGAAAC------ACCACCTGAGACAGGAAAGAAGCACGACGGTGAAGACAGTCATCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=6506.000000
s ce10.chrX             4367451 47 + 17718866 CGGAACATGATATTTGATTGTTTGAGCTGTTTCCATCTGACAAATAA
s caeRem4.Crem_Contig0  1308410 45 -  4500979 TGGGATGTGGTACTTGATAGCAGTCGACGActctatctgaaaatt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    70251 47 +   386604 TGGAACATGGTAATTGATTTCCTGAGCGTtctccatctgaaaaaaga
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2599112 47 +  4147112 CTGAACGTGAAACTGGACGGTCTTCGGAGATTCCATCTGAAACTTAA
i caePb3.Scfld02_0      C 0 I 868
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=-9271.000000
s ce10.chrX             4367498 195 + 17718866 TTCGGAATGTTGA-------------ACAAAA----------------AATGAAACTTA-------TAAATATGAGACAAGGATTAACAACCTTGTGGGATATAGTAATAGAAGATAAATCGGTAATAATTTAAATACGTTTATTGG----TGTAAAAAAGTAAT--------------GGGCAATCGGTAGGGTGT-ATCAGGAAACATCTATGATTAGCAGTACAATT-----TCTGAAATTAATTC---------------CCATTA
s caeRem4.Crem_Contig0  1308455 198 -  4500979 ----gaatattgatttgttcccattcagaaaa----------------aaataaacataaacAGCATAGATA------------------------------TAAAAACATAATGT-TAGTAGGGAGAAATTAGGTATGAACATGGA----GGTAAACCAAGAAACCACTGGATCGGGTGGACAA-----AGGACAT-Ttcacaaaacatttatt--aGACAGACAAATGGACCACTTGATAATAACTG----AGTTGC-----TCACGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    70301 251 +   386604 ttAGGGATGCAAAGCGGAG-CCATTCAAATAAAGCATGAAGCACATGTAATCAAACATAATCAAT-CAGATATGTTACACAGGCTAGTGACCGTGt------tagaaacataaaa---atcaGCCAGGCATTAGACGTTCACATAACATTTattaaacagaaaaaaaacatgttcg---GAACAA-----TTGAAGTGCTCACggtgatttttctgaaagcaaCTCAATTTACCGTTATCCTCTAGCTTTTACAGTTACCATCTTCACTA
i caeSp111.Scaffold622  I 3 I 46
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=-629.000000
s ce10.chrX             4367693 58 + 17718866 AAAAATT--TGAAAAAAATAGATG----------------------ACAGCAACCTCTAAA----TGGTAG----------CTTCAA--CTCGGATGA
s caeRem4.Crem_Contig0  1308653 98 -  4500979 GGAATctcctgaaagaaaaaaatgcacCTTACGTCATGCTTGTGAAAAAGTaccttttgaagttttgggaGACGGTCCTGACTCCAAATCTCGATTCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeSp111.Scaffold622    70552 46 +   386604 I

a score=85.000000
s ce10.chrX             4367751 194 + 17718866 CTGTGGTTCGAGCAATGTGTTTATGCATGTTTTGAAACACCTCGGCAATGAAGTACCAAATTCTAAAATTTTGGATAAAATTGAATTATTTTTTGA----AAGTGGAATAAGA---AATTACATGACCACCGCCGAAGT---CAAACCGATAACTATCAAAAATCCAATGGTCACTAAATTCTGGACGTCCATGGTAAAGTTTG
s caeRem4.Crem_Contig0  1308751 170 -  4500979 CCGACGTTTGTGCAATGTGACTTGAGATTTTGCTAAAGACTTGTGTAACGCTATACCAAGCACTGTAACC--------GGTTGAGTTCGTTATTGA--TCCATTCTTTTCATAAGTCCTTACATCACGGACGCCGATATCAGCAAGACAGCAAGAATAAAGAA--CACTGG-GACGAAGTTTG---------------------
i caeRem4.Crem_Contig0  C 0 I 112
s caeSp111.Scaffold622    70598 178 +   386604 ---------CCGCGATTTGAGTAGTAATGTTACGGATGACGTTGTTGATTGTATACCagcttctgaaat-----------ttgaattgatcATTCACTTCAAACCCATTGACA---TCTTACATAACGGCAGCTGTGATGACCAAAATCGcagcaataaaaaa--taatgg-cACAATGTTGGCAATTTCGATTGTGACGTCCA
i caeSp111.Scaffold622  I 46 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=-592.000000
s ce10.chrX             4367945 95 + 17718866 AGTTGTATAAAAATGAGGTATCTGAATCTTGAAATGAGATGTGTGCGATATATTTTTCAATCGCCGATAATGAGAATTGAAATGTTTTATAAAAG
s caeSp111.Scaffold622    70776 56 +   386604 ---TCCACAAAA------CCCCTTAACCTAGTACTGAAAT-TG-------------------------AACTAGAATAAAAG----TTATCAAAG
i caeSp111.Scaffold622  C 0 I 101
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeRem4.Crem_Contig0  1308921 112 -  4500979 I

a score=0.000000
s ce10.chrX             4368040 61 + 17718866 CGTGTACATGTATGCATTTTAGACCAGAATTTTTACTCCTCACACAGAAAAAAAATGTCTG
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeSp111.Scaffold622    70832 101 +   386604 I
e caeRem4.Crem_Contig0  1308921 112 -  4500979 I

a score=517.000000
s ce10.chrX             4368101 42 + 17718866 ACGAAATAATTAACACATGAATTACGTCAAGGTTAAATTTTA
s caeRem4.Crem_Contig0  1309033 41 -  4500979 AGGAAGGAATGAACA-ACGAAAAACGCAATGACAATGGttta
i caeRem4.Crem_Contig0  I 112 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeSp111.Scaffold622    70832 101 +   386604 I

a score=-1521.000000
s ce10.chrX             4368143 58 + 17718866 CAATCATAAATATGGTTTAAgaaaagtttaagaattccagtaatccgaaatttgggca-----
s caeRem4.Crem_Contig0  1309074 50 -  4500979 ------tcaaaatatttca--aaaaattgtgggAATTTTGTAGTTCTAAA-----GCTCGGAA
i caeRem4.Crem_Contig0  C 0 I 181
s caeSp111.Scaffold622    70933 49 +   386604 CAATATTAAATGTGACACA--AATAAAATAAGAGATTCTTTAGTT----------GCACGA--
i caeSp111.Scaffold622  I 101 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=-922.000000
s ce10.chrX             4368201 127 + 17718866 atttcagccagttccaaaattgctcactgcagcaaatt-caaaaaccagcaattgctcaacttaccaattaccgCACACCTCTGATCAAACCAAAATAATAGTTATGGTTTGGCAACCTAACAATACC
s caeSp111.Scaffold622    70982  73 +   386604 ---------------AAAATTG----TTATGGCAAATCACATGAATTAGGGTTTAGtc---------------------------ttaaa-aaaaata--aatcacaGTTT------CTAATGATTTC
i caeSp111.Scaffold622  C 0 I 38
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeRem4.Crem_Contig0  1309124 181 -  4500979 I

a score=0.000000
s ce10.chrX             4368328 54 + 17718866 AAAATATTAACCAAAACGGAAGGGCACGCTAAAATTTATCCACAAAAAAGTTAT
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeSp111.Scaffold622    71055 38 +   386604 I
e caeRem4.Crem_Contig0  1309124 181 -  4500979 I

a score=191.000000
s ce10.chrX             4368382 2 + 17718866 TC
s caeRem4.Crem_Contig0  1309305 2 -  4500979 TC
i caeRem4.Crem_Contig0  I 181 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I
e caeSp111.Scaffold622    71055 38 +   386604 I

a score=-6345.000000
s ce10.chrX             4368384 127 + 17718866 --GAGAGCTACTAAAAAGAAATAGTCTATACTACTGTATTTCAATTTTATCGTTGTTACAAATTATGAATACATATGGTGCATGTTGATCGTCTGTAATAAA--ATTTTGAAAAAATTTACGAACATTTTT
s caeRem4.Crem_Contig0  1309307 116 -  4500979 --AAGTATTACTAGAATATAGTTTACTTTTTGAGTGAAACTGTATTCTAGCAACAAGACTAACTAC--TCTAATAAGAAGT-TGATGAT---------GAAATCAACTTCACTAAACTCATGTCCATCAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    71093  80 +   386604 GATAGCGACtctgaaa-------------ttgattaaaTCAACGTTTTTCAATCTAAACTAGGCATGAGATAACTAGCAGCGCGATGAT---------TAAA-----------------------------
i caeSp111.Scaffold622  I 38 C 0
e caePb3.Scfld02_0      2599159 868 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=2415.000000
s ce10.chrX             4368511 18 + 17718866 CTTACTTTAAATAGGAAG
s caeRem4.Crem_Contig0  1309423 18 -  4500979 CTCACCTCAAATtgggag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    71173 15 +   386604 CTCACCTTAAT---CAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2600027 18 +  4147112 CTCACTTCAATATCCAAG
i caePb3.Scfld02_0      I 868 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e cb4.chrX              9514899 1765 + 21540570 I

a score=35899.000000
s ce10.chrX             4368529 213 + 17718866 AAGTGGAACAGTGTC--------TATGATCACTTTGTTGGCAGCATATACTTCCAGCCCATGCATTTGCTCCAGTTGCTCCACGTCAAGAGATACAAATCC---TTGTGGACGACTTGGCTCCTCTTCATCCTCAAATCTTTCGAAAAAACGGGGCTGTGGGAAGAACCATTCTCTGATGAG-AGTTATGAATAGGATGATGCTATAATTT----CCATAACTATTTAA------
s cb4.chrX              9516664 208 + 21540570 AAACTGAGCGGTGTC--------CTTGACAACGTCGTAATCAGTGAAAGCTTTCAAGCCGTGATCGTCCTCGAGCTTGGAGACATCCAATGAGACACAGTT---CGGTCCTGGAACAAA------CTCTTCGACAGCTTTCTTGACATTCTCCGTCTTTGGGAAGGTC---TCACGGATGAG-AGTGATGATGAGAACCAAACTGAAAAAG------TCACACAACTAAATTGAA
i cb4.chrX              I 1765 I 6
s caeRem4.Crem_Contig0  1309441 220 -  4500979 aagaggaagagtgTCAGATGTTTCTTG-----GTTGCAAACATAGA---TCTCCAATCCATGCGTTTTTTCGAGGTCGGCAACGTCGAGAGAGACGTATTT---GGGAGGTGGAACGTAGTCCTTCTCCTCTTCAATCTTTTGGAGATGTTTTGGCTCTGGGAAGAACCATTCGCGGATGAG-AGTGCAAAGAAgaacaaaactgaaagaaaagtgTTCACGTGAGTAGAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    71188 210 +   386604 GAGCTGAACGGTGTC--------ATTGTTCCCGTTGTTATCCAAATATCCCTCGAGTCCATGAATCTTCTCAAGTTGGGAGACATCGAGAGGCACAAACTTTTGTGGTGGTGGAACAgaatccttttcttcttcgaattgCTCGAAGTGATTTGGTTCCGGGAAGAACCATTCACGAATGAG-GCTGCAGAAGAGAACGACGCTGGAACAA----AGT------TTTGA------
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2600045 216 +  4147112 GAGTGGAGCTGTGTC--------CGTGGTGTCCTCGTGTTCCACGACAGCTTTGAGACCATGGAACTTCTCGAGTTGAGATACGTCGAGGGAGACGAactttggtggtggtgggacataatccttctcctcctcgaATTGCTCGAAGTGTTTTGGCTCCGGGAAGAACCACTCACGGATGAGAGATGC-GATGAGAATCATGCTGAAATAT----GTTAACATGTTTGA------
i caePb3.Scfld02_0      C 0 I 19
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-1924.000000
s ce10.chrX             4368742 15 + 17718866 AAATAATTTCAGATC----
s cb4.chrX              9516878 13 + 21540570 ----AAATAGGTATCAA--
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1309661 15 -  4500979 ----CACTAGTTATTTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    71399 15 +   386604 TGAGAATTGGATATC----
i caeSp111.Scaffold622  I 1 I 2
e caePb3.Scfld02_0      2600261 19 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=30282.000000
s ce10.chrX             4368757 83 + 17718866 ATCGTCACTTACAAAAATATTGACCAAATTAGGAGCAAGATGAGATAGATGCATTTGATGATGTCCATGTTGAAACAAGTCAT
s cb4.chrX              9516891 73 + 21540570 ----------ACAGAAATGCGCTCCAGATGAAAAGAAGGAGGAAGTAGATAGACTTGACGATGTCCATGTTGATGTAGACCAT
i cb4.chrX              C 0 N 0
s caeRem4.Crem_Contig0  1309676 75 -  4500979 -------CTCACAGAAATCCGCTCCAAACAATAAGAATGAGGATGTAGATTGCCTTGACGATATCCATGTTGATGCAAACGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    71416 83 +   386604 CTTTTAACATACAAGAATCCACTCAAGACAATGAGCAAGATGATGTAGATGAACTTGACGATGTCCATGTTGATGCAAACCAT
i caeSp111.Scaffold622  I 2 I 12
s caePb3.Scfld02_0      2600280 83 +  4147112 GTGGAAACTTACAAGAAGCCGAGCCAAATGAAAAGCAAGATGATGTAGAGTGCTTTGACGATTTCCATGCCAATAGAGACCAT
i caePb3.Scfld02_0      I 19 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-18259.000000
s ce10.chrX             4368840 164 + 17718866 ------------------------------GCAGGTTTGCGAAATAGTA-----ATTGAA--------AC-TAACAAAAAGTTAAGAA-GGATAATTAATTAAATATACAGGTATACTTATTGGTTTCAACCAAAATCGATATGAAAAATTGTTCAGAAATTGA-CATATGTAACATCA--ACATTCATTA--ACAAAAAAAGGAGATCAATAA
s caeRem4.Crem_Contig0  1309751 180 -  4500979 CCATAGTTGCTAAGCACAGTTGTCGTTCAATCAAAATTCTGTATCAAGATATTAAACGAAGAATTAAAACATATCAAAAGATATAAAATATATAA----------ACGGTGGTTGGA-------AACCGAATAAATTGAGAATTATAAGTTTTGA--------AGTGAAattgaaaccaa-tttttcatta--acaAG--AGGTCAATCA----
i caeRem4.Crem_Contig0  C 0 I 70
s caeSp111.Scaffold622    71511 156 +   386604 -----------GAACAC--------TTAGAAAAAGGTTCTGAAAGGGTCTATT-aatgaa--------atttatgaaaaaggttgaaa-acaaaa----------atattggtATGGT-----GAATTAAACCAAGTACCTAacaaaaattgggaaaaaaatgagttga------------attttcattg--acAAGGTGAGGAAATTAGGAA
i caeSp111.Scaffold622  I 12 I 230
s caePb3.Scfld02_0      2600363 134 +  4147112 ----------------C--------TTGAA--------CTGAAACG--------AATGAA-----------Cagggaaaag--caaaa-atataA----------AACCCTGCAAGA----------------AAATATTAACAAAAAGTTATGGTACAATTGAGTGAAGGTGAGATAGGTATAGTCATGGTTATAAACCAAGTaagtgaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=207.000000
s ce10.chrX             4369004 55 + 17718866 TTAATCTGTGCAGTGCTAACAATGACAAATGTCTACAATAGTATTGCATTCAGAC
s caePb3.Scfld02_0      2600497 44 +  4147112 ttaaatt----agtG--AAGCATAATAAAT-----CAGTACTTCTTCATTGACAC
i caePb3.Scfld02_0      C 0 I 79
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I
e caeRem4.Crem_Contig0  1309931 70 -  4500979 I

a score=0.000000
s ce10.chrX             4369059 74 + 17718866 CTGAAAAATATATGCTCTCAGTTTTGAAAAAAATATATGTTTCCCCGAAATTTCCTGCCTTTCTACTTATTTTC
e caePb3.Scfld02_0      2600541 79 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I
e caeRem4.Crem_Contig0  1309931 70 -  4500979 I

a score=90.000000
s ce10.chrX             4369133 64 + 17718866 TCACTGACAA-TGAACATGTTCAAAAATAAGGAAAAAATCCTTAATAA-ATTTTATAAAAGTTTAG
s caeRem4.Crem_Contig0  1310001 53 -  4500979 GCATTGAGAACCGAAGACGTTCACAAG-------------CTGAATAGTATTTCATTATACCTGTG
i caeRem4.Crem_Contig0  I 70 C 0
e caePb3.Scfld02_0      2600541 79 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I

a score=-9025.000000
s ce10.chrX             4369197 212 + 17718866 AGAAACGACTTAAAAATACGAAGAAATTTAAAATAAAATTGCAAACTAATTCTTAAATCATTAACAAAAGTTTTGAAAGTTTTTTTTAGTACTGGCATTTTAAGTTTTAAAAATAATGAACCCAACTTTACTGTACTTTTGTCATTTACGATCCATTCTTTAA----AATT---TTAAGAGATTAATTTATGGATCCTTTTGATTGCAAATCAAAATGT------
s caeRem4.Crem_Contig0  1310054 137 -  4500979 AATTACTACCTATTACTATA-----ATGTAAAGctaaa---------atttctt------------aaaattaaaatagcTT------------------------TGCAATTTGGTCTGATCA-------TACTCTTTCCGAATTGATTAATTATATATTGAAAGCAATCAAACTAGAagcaaaa-------------------------tgaaaagt------
i caeRem4.Crem_Contig0  C 0 I 44
s caePb3.Scfld02_0      2600620 182 +  4147112 ----AGAACCGATGGAGATA-------TCAAAGCTGAA---CAGAAcatttctgttatttttag-AAAGATTCTAAGAATCTT------------AATTCAATGCGTACAATTTGAAGAACACT-------TATacttttctgactttttaatcaaaaacta-----atttgGATTAAAAGTATAAATATTTG----CTTTGTTTTGTATTTGAAAAGTCAGAAT
i caePb3.Scfld02_0      I 79 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I

a score=-871.000000
s ce10.chrX             4369409 51 + 17718866 ATCTCGGCATACTCTTTAAAATTTTTTCAAACTTACTTCCCTACATTGCAA
s caePb3.Scfld02_0      2600802 29 +  4147112 ----CGTGCCAGTCGTTCAAATGTTCACCGGTT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I
e caeRem4.Crem_Contig0  1310191 44 -  4500979 I

a score=-8843.000000
s ce10.chrX             4369460 219 + 17718866 --TATA--AACTTTGTTATACAAAAAGTTATAATTAGGAAATTAAAAGTTTTGTACGTTTGCAAAAGTATTTGCCGTACATCCCTACCGTACCCAAAAAAAAAATAATACTTACTTTTAATAATTTTGTCACAAGATTTCAAATCATTTTAATCATCTCCTCACAG---AATTCATTTCTTTCAT--------------ATGAGCGCTCCACAACAAAAACTCGTGACTGT--ATGCCTTCA---
s caeRem4.Crem_Contig0  1310235 176 -  4500979 --CATC--AACTCAGCTTT-----ACATTTTAAGAACTGATCTCGAAATTAC---------------------CTGtacatttct--tattttcaaa--------tttcctcaCCTTTAAT----------CAGCGTCTCAAACTGTTCGAATGAGTCGTTCAACG---TTTTCATGGCGTGTTTTATGCTCTCCGATGATGAACACGGGGCGACGTGAA-------------ACAGCTTGA---
i caeRem4.Crem_Contig0  I 44 C 0
s caePb3.Scfld02_0      2600831 161 +  4147112 AGAATCAGAACCAagtattcagaaattttctaaGAACTCACCTAGGAA----------------------------------------------------------------------AAT----------CGATTGCCTAAACGGCTTAGATGAGACGTTCAACGACAGCCTCATGTTTTTCCTCGCCATCTCCAACAATGAAGACGTTGCGACGAAGA----TGACGGGCCAATGCCTGGCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    71667 230 +   386604 I

a score=29397.000000
s ce10.chrX             4369679 219 + 17718866 ---CGTTGTCGGGCTTTTTGTATTGACTTGATTGCAGTTCCCGCAAAACATACTGCCCATGCGACATCAGCAATATAGCACGCGCTGAAAAATTCAATTGTTCATTGCAAAACGTTGAATATTATTTAAT--------TACACAATCACTCCCCAGACTAGAGCCAGGCAAACCAGCAGCAGAACAACGAGTGGCGGAATGGTGCTCT---CAATGATAAAATAAATTCTGAA
s caeRem4.Crem_Contig0  1310411 224 -  4500979 CGGCGCAATTCAGTCTCTTTCATCGAGTTGATAGCATTTTGGGCAAAGCAAACGGCCCATGCGACATCGGCGATGTAACAAGCACTgcaaaatg------tgcaaaatataattttgttaTGTTTCCATGGAAGATCTTACACGATGACTCCCCAAAGAAGAGCAAGGAAAACGAGAATGAGAACGACGGAGGTCGGAATGTGGCTGT---CGATGGGAAAATGCATCCTGAA
i caeRem4.Crem_Contig0  C 0 I 92
s caeSp111.Scaffold622    71897 203 +   386604 ---CGTTGGTGAGCCTCCTGCATTGAACGGATTGCAGTTTGAGCAAAGCAGACGGCCCAGGCAACATCAGCGATGTAACACGCTCTGATAAAGTGAA--GTTTGAAAGAGAAGCTA--------CTCAAT--AGTGGTTACACAATGACGCCCCAAAGAAGAGCAAGGcaaacgagaagaagaacgaccGTAGGCGGAATTTGGTTGT---CGACAGCGAA------------
i caeSp111.Scaffold622  I 230 C 0
s caePb3.Scfld02_0      2600992 209 +  4147112 ---CGGCAGCGGGCCTCCTCGATGGAGTTGACGGAGGAATGAGCGACGCAAACAGCCCAGGCAACGTCGGCAATGTAACATGTGCTGGAATATT------TTGCAAATAAAATCGAG---CGCTTTCAATTCTGCGCTCACAAGACGAGTCCCCAAATGAGAGCGAGGAGAACAAGGATGATAACGATAGCAGTTGGCATTTCGCTGTTGATGACGGTGAA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-1088.000000
s ce10.chrX             4369898  9 + 17718866 GTTTTTTTT----
s caeSp111.Scaffold622    72100 13 +   386604 ATGCATGGCTGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2601201  9 +  4147112 GTTCATCTT----
i caePb3.Scfld02_0      C 0 I 236
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1310635 92 -  4500979 I

a score=-348.000000
s ce10.chrX             4369907 80 + 17718866 TTGAGCTATTTGAACAATGAGCACAATTAATTACGTAATCTCTG--GGTTTAAAACCACTTTTCAAAT-----TTACAAA---TCACAAT
s caeSp111.Scaffold622    72113 88 +   386604 -TGGG-TGTTACAAAAATGAACACAAGACAGGAAAAAGTATTCAAAGGTTCGAAACCGTTAGGAGAAGAgtaattacaaaaattattaac
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2601210 236 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1310635 92 -  4500979 I

a score=-2790.000000
s ce10.chrX             4369987  98 + 17718866 --ATAACACTTATTTTTA-------TTGCTATGCATCATTCAAATTTTTCTCAGCT--GTATAATAACTTTTAACAACATTGATTTTGTTCAAT------TCTTCTTTTTCGAGA
s caeRem4.Crem_Contig0  1310727 113 -  4500979 AcaacaatttcatttccagtaTTAGCTGTTTGGtgatatttcttcagttggtGGCGAAGtgttataatttttgatagaagGA--TCTGATTGGtcagaagattttttctccaaaa
i caeRem4.Crem_Contig0  I 92 I 5
s caeSp111.Scaffold622    72201  89 +   386604 --AAAGTGTTCATTTTCA------------CAGAGAGACTCAAAACGTTCACGGATTTGTATTGTACGTTTGAAGCGAAGTG--TTTGTT----------ACTCCTTGAGTAACA
i caeSp111.Scaffold622  C 0 I 25
e caePb3.Scfld02_0      2601210 236 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=10848.000000
s ce10.chrX             4370085 506 + 17718866  
s caeRem4.Crem_Contig0  1310845 512 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    72315 543 +   386604  
i caeSp111.Scaffold622  I 25 C 0
s caePb3.Scfld02_0      2601446 547 +  4147112  
i caePb3.Scfld02_0      I 236 I 1312
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=1361.000000
s ce10.chrX             4370591 275 + 17718866 -----------------------------------------------TTAACAGGAGCTGC---GATTGGGG------------TCCTTGGTGGAATAGTGTTCACAATACGCCGGAGCTCTTCTGGAGGCAATGGGCAGAAAAATCCGTCGGCCCTCTCGATGAGCATGCAGATGCTGGAAATAAAAATTGACTCAAGAGTTTTTA--AAGAAAAATCAAATC--------TTACCACACCGCTAGTGCGCATACTAAAATAACCACGAAGGCAAACTGGATGGCTGGGTTTTTGAAAAATG-GGAGCATCT----GTGAAGA---ATATTGAA--------GATTAATAAAATAGAAAATA
s caeRem4.Crem_Contig0  1311357 327 -  4500979 TTGGAGCTTGACGAGCTGTAGGagctggagtagctggagc----agctgga--gaagctagagcagctAGTGCAGCCGGCAGAAGTCGTcgccgattttcagtcatgaTTCTCTGGAGCTCCTCGTCGCTGATCGGGAAGAAGTGCTTTATGATTCTCTCGATGATCACGcaagagctg-----aaaaattgagtta------tttaCTAAAGTAAGCTGGAGC----CAATGTACCAGATAGCGATGGCGCAGATAATGATGACGATGAGTGCGTATTTGACGGATGGATTCAGAAAAT----CGAACATCTGGAATTAATTG---TTAGTACA--------TATGGAACACACAGAAAATA
i caeRem4.Crem_Contig0  C 0 I 401
s caeSp111.Scaffold622    72858 314 +   386604 --------------GCAGCAGGAGC-GGAG--GCTCGAGCTTGAAGCGGGATCGGAGCTGG---AACTCGACCAGCTG------GTCTTGGTTGA---GCAGCCATGATTCTTTGCATCTCATCTTGTGCAATTGGGAAGAAACAACCAACAAACTTCTCGATGAGCATGCAAGAACTG-------GAACTGTGTTG------TTTG--GAAATGAACAAATGCATGATAACTGACCAAACTGCAATTGTACAGAAAAGGATGACCACAAGAACAAATTGGACAG-CGGAGTTACCAAATATAAAGAACATTC----CTAAACGCGATTAGTACAAATACAAGAATAAAACAACAGGAAGGTA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-1519.000000
s ce10.chrX             4370866 271 + 17718866 CTTTTTAAAAAATGTACTGGAGTATGGTAAAATACCACTTCAAAAAAATCCATTAAAATTTAAAAAAAATCACTCGTCAATATAAACGAATC--ATGCAAATGAAGAAAAAAACCATAAAGCTACATTAAAAATACAAAAAAATTATCAGTAATGTTGAAGAGAAGTATCGACAAAGTCAAGTGAATTGATCTCCACATCATCAATGACTCTTTGACGATTGGCAACATTATTCTTGCATCCGGTAATGTCGCAGTGGTAGTACTCATCAAAT
s caeSp111.Scaffold622    73172 185 +   386604 ATCT-----------------GTACGGAAGGATACCGTATAAGAgcga------agaatgagaaaaagag--------attattAACAGGTTTTATGCAAAC---------AGTAGTAAATATGCAT----ACCACAGATATTTTGGTGTTGATGCTGG-----------------GTTAACTGAATG------CATAGAAGCATTTAAGTTTTATAGATT----ACAGTATCCTTGTATC---------------GATGGG--TCATCAAAC
i caeSp111.Scaffold622  C 0 I 30
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1311684 401 -  4500979 I

a score=0.000000
s ce10.chrX             4371137 40 + 17718866 ATGACCAACATGCTGAAAATCGAAATATCTGGACAACAGT
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    73357 30 +   386604 I
e caeRem4.Crem_Contig0  1311684 401 -  4500979 I

a score=-2980.000000
s ce10.chrX             4371177 238 + 17718866 ACACCGTGCCGAGCATGTAACGGGCAACAAAAAAAACGAAAACGGGCGACAATTGGCGATTATTGAAAAGTTGTGGGCAGGAGCAGAGGCTCATGGGGATCTGGACCGCCCGATGTTGCCCGTTTTTGCCCACTTTAATAGTATTCCAGGTCTTACTACGGTGGTAGAGTAATATTCTATTTTGTTCGCCTATACTCAAATAAATACGGTTTTTAATTACTTTCCCAAAAAATTCCAA
s caeSp111.Scaffold622    73387 108 +   386604 ACCCCGTA--------GTAACGAG---------------------------------GATTGCAGTCGAGGTATGGACAGTA-----------------TCCATACTCCTCGAAATTGGTC---------------------------------AAGATGCTGGAAGAAACCCCTTGTGATTTATTTGC--------------------TTTCTAATCA-------------------
i caeSp111.Scaffold622  I 30 C 0
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1311684 401 -  4500979 I

a score=-3977.000000
s ce10.chrX             4371415 192 + 17718866 AAACTTACATTATTACCCCCACCACTAAGAACAGTG-CAAGAAACGCCAAAAGCAGA----------ATGTGTGCAGACTTCATC--------TCTGAAATTACAAATTTATTAAATAAAGGTTCTAGGTACAAAA-----ACAAACAAGGAAACAAAAAATTAAAAGACAGTAAA--ACATCTGAATAACTAAAAAAAAACAAAA--------------------------GAAAAATACAAA--------------------
s caeRem4.Crem_Contig0  1312085 189 -  4500979 AAACTCACATCAATAGTGCAACTACCAGCAAGGCAG-CAAGAAAAGCGAAGAGCAGA----------GTCTGGGAGGTCATCATTGTAGATACCTGGAAAC----ATTTTATTGAGTG--------TGATATTAATGA---AGAGGCAAGCGGACAAATTAACAAAAGCAGACAAGGCGGAAgcgaa---ctgaaaaaaatgaaaa--------------------------ggaacattgaaa--------------------
i caeRem4.Crem_Contig0  I 401 I 366
s caeSp111.Scaffold622    73495 222 +   386604 --ACTAACA-CGATGA------TACTagtgatgaagaaaagagcaacGACCATCAGAAAGAGAATACGTCTTGGAT----CCATTGCA-----CCTGAAAT----TGTTTATCAGATg---------gaaacaaaggaaccagaagcgag-gaacaa---aaaggaagcaaacaaa--ggaaacgaa-----aagaaaactgaaaactgaagttgataccagaaaagGCTTTGGATAACTGAAAAGTAAGCAATGAGTTGCGTT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-1693.000000
s ce10.chrX             4371607 202 + 17718866 TTCTGAAGACGTTAAC-------------------------------TATCTGTTAACTGTTAACTGATGTAGCTAT----TCTGCAAGTAGAAAATATTATTAAATCAAT--------------------ACTAAAAAAAGAGATAAAACTTACA-------------ACCAATTTTGAAAAAAAAAGC--AGTCCTAAATTACAAATCCCAAAAAAGCTGCACATCGCAATTTATACTCTGATTTCAAAAGTTTTGTGAGGTCCAATCTG
s caeSp111.Scaffold622    73717 245 +   386604 CTGTGAACATGTCGACGCAATCATTGGTTGGTATGACTTGAAATGAATAGCTAATAACAGtacacttttgaaaatgaaatatctgCAAG----AATTATTATAGATACAATGCTCGATAACGGATAAACTAACTATAAACCGAAACGATACCGAAACCATTGGGTATATACAAAACTGGGAAACTAATACCGAGTAATAGAGTACCAATCC------ATGTTAACATCTC--TCTAAACATGAATTTCCA---------------CAATTCC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1312274 366 -  4500979 I

a score=-1497.000000
s ce10.chrX             4371809 42 + 17718866 TTGCTCGGAAATCCCGACTCGCCCGCTTTTGGTCCCGTGGTT-
s caeRem4.Crem_Contig0  1312640 39 -  4500979 TTGTTTGGAATA----ACCCGAGCTTTCGTAGCTTTCTTGGCT
i caeRem4.Crem_Contig0  I 366 C 0
s caeSp111.Scaffold622    73962 31 +   386604 CCGTTCAGAAGA-----------TTCTCTCTGTCTTCGCGTC-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2601993 1312 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=15831.000000
s ce10.chrX             4371851 114 + 17718866 TCGCTTGACGTCTTCTTCATTCAATTTTTTAGCTTCACTGAAGTAATCCATTGGTTTTGCCACACAGTGCAGGTAGATTTCACAGGCGATGAAAATGCTACAAGTCACAAAATG
s caeRem4.Crem_Contig0  1312679 113 -  4500979 TGTCTTGCAA-TTTCTGCATCCAGTTTCTTGGCTTCGTCGAAGTAATTTAATGGACGTGTCGTACAGTATAGAATAGTTTCACATCCAATAAGAACACTGCACTGAAGACTATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    73993 107 +   386604 TCTCTAGCTA-CTTCGGCGTCCAATCTCTTGGCTTCTTTGAAATAGTTCAAAGGACGAGTCGTACAATGAAGAAATACTTCACAGATGATGAAAACGCTAAAGGTAAC------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2603305 104 +  4147112 TCTCTTCTTGTCTTCAGCATCCAACTTTTTGGCCTCTTCAAAGTAGTTTAGTGGACGACTGAGACAATACAAATAGATTTCAGCAATGCAGAAGAGACTGAATG----------
i caePb3.Scfld02_0      I 1312 I 33
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=-1125.000000
s ce10.chrX             4371965 30 + 17718866 T--TTTAAAAAAAAATTGAGCACACAATATCA
s caeRem4.Crem_Contig0  1312792 25 -  4500979 TACTAAAAGTAAAGATAGAAAACGT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    74100 27 +   386604 ---TATGAGAAAAGACGAAATGAGTGAAAA--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2603409 33 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=14132.000000
s ce10.chrX             4371995 55 + 17718866 ACTCACACAAAGAAGAACAAGAAGAGGCTGAGAAAAATGAGCATATTGATAGCAC
s caeRem4.Crem_Contig0  1312817 54 -  4500979 -CTCACACAAAGAAGCACAAAAGcagagagagaaaagtaaCCAAATAGATTGCAC
i caeRem4.Crem_Contig0  C 0 I 289
s caeSp111.Scaffold622    74127 55 +   386604 TCTCACacaaagaaagagaagaacaagCATAGGAATATAATAACGTTGATAGCAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2603442 55 +  4147112 ActcacacaaaaaagaagacgaataGACACATGAAAACAATTGCGTTGATAGTAC
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=297.000000
s ce10.chrX             4372050  84 + 17718866 TAAGTTCAAGCATTATACCCT---------AAACTTTTATAATTAAGGTTAAAATTGG----------TGAATAATACAAGATAAAACTGGACAGC---AAACCGA
s caeSp111.Scaffold622    74182  89 +   386604 TGATTTCCAGCATGACCATCT---------------ATAAAGATTACACGAAGAATGGAAgcaaaacatgaaaaagtaGATTTCAATCGG--AATTAAGAAACCGa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2603497 103 +  4147112 TGATATCCATAGTAACACTTTTCGAACAGAAAGCTgataaaatgaacaaaaagataggaagagaaaaatgaggaatgaaATATGAATCGGCAAATC---TAACCGA
i caePb3.Scfld02_0      C 0 I 13212
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1312871 289 -  4500979 I

a score=584.000000
s ce10.chrX             4372134 81 + 17718866 TT----AATCAATACAGTGCAATT---AAACAGACAGGCAAAACATTTAT--------TCCTAGATATGAGTATCATACGGTAAGAAGTAGTACAT
s caeSp111.Scaffold622    74271 90 +   386604 ttatgaaacaaaaaggatgcaaatagaaaataaactgGTTCAACTTTTATACTAATCATCTGAGATA-----ATGATACTGTGA-AAGGACTACAT
i caeSp111.Scaffold622  C 0 I 109
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeRem4.Crem_Contig0  1312871 289 -  4500979 I

a score=0.000000
s ce10.chrX             4372215 640 + 17718866  
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    74361 109 +   386604 I
e caeRem4.Crem_Contig0  1312871 289 -  4500979 I

a score=195.000000
s ce10.chrX             4372855 40 + 17718866 TGAAAACAT-GAAAAAGATGTAATCAAGACATAAAAGTGCA
s caeRem4.Crem_Contig0  1313160 36 -  4500979 tgaaaacctCTAAGAAGATG--ACAAGGTGATAGAAAT---
i caeRem4.Crem_Contig0  I 289 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I
e caeSp111.Scaffold622    74361 109 +   386604 I

a score=989.000000
s ce10.chrX             4372895 25 + 17718866 AAACTTACCATTTCA-----TTATGGGTAG
s caeRem4.Crem_Contig0  1313196 30 -  4500979 CAACTCACGTTGTCTCAGGGATACACGCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    74470 30 +   386604 AAACTTACGAGTTCACAAGTTTACGGGTAA
i caeSp111.Scaffold622  I 109 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  284214 4742 -   375229 I

a score=26664.000000
s ce10.chrX             4372920 254 + 17718866 TTACTATCTCGACGCGTCGACAGCAAAACGGCTGTATCGTTTTCCGAGTTGAAACGGGCCGCAACTCTGGCAGCCCTCGAATATCGGCGTCGTTGAACACACGGCTCTACGAGAATTATGAACACGCATCCACTGAA-ATTTATTTCAAATGTTAA----TC---TAATTAACG-------------TCTCTTACCATGCTGCAACGGCTAGCAAAACTCCAAATACCACAGCGAACCATAGGAAAATATTGGCTATTGGGAGTGTCGGGTGCAT
s caeRem4.Crem_Contig0  1313226 253 -  4500979 TTCCCGGT------CCTGGTTAACAAGACCGCAGTATCATTATTCCGATTGAAGCGAGCTGCAACATGAGCAGCACGAGCAAAGCGGCGACGTTGAATGAATGGCTCGACAACAAGCAGGAAGAGGCAACCGCTACA-A--------AAATcctgt----tt---tcagaaacatcatAGTTTCAGTTGGCTCACAAAACGGCAACCGCCGTGAGTACTCCAAGAACGATTGCGAACCATAGAAGTATGTTGGCCATTGGCAAGGATGGGTGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    74500 258 +   386604 CCACCGTCAAGACATCTAGAGAGGAGAACAGCAGTGTCGTTGTCTCTGTTGAAGCGAGCCGCAACTCTCTCCGCGTAGGCCACACGGCGACGTTGAATGAACGGATCGATGACGATGAGAAAAAGGCATCCACTAGA-A--------GAGAGATGTAAGGTTGAATCAGAAAGA-CACAA-------TGTCTTACAAAAGTGCAACCAACAGGAGGACACCCAAAACGATAGCAAACCACAACAGGACGCTGCCGATTGGCAGCGCCGGGTGCAT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  288956 262 -   375229 TTCCCATCGTGACATCTTGATAGAAGAGCCATTGTATCCTCGTATTGGTTGAAACGAGCAACAATCAAAGAAATATGAGCACTACGCCGGCGCATAGTACACGGTTCGATAATTAAGATGTAGAGACAGCAGCTAAAGA--------AAAATATGT-AGGTT---TTAAGATAA-CTTTCTTTAAACTTGCTCACACTACACCAACTACGCCGAATATCCCGATAACAATTGAAAACCAGACTAGAAGTCCGGATATTGGAAGTGATGGATGCAT
i caeJap4.Scaffold17084 I 4742 I 2043
e caePb3.Scfld02_0      2603600 13212 +  4147112 I

a score=7581.000000
s ce10.chrX             4373174 230 + 17718866 AAAGGTATTCATCTTT-AAAGTTTTGTAAGGTCAAAT---------CAAATTTGCTAACAGGAAAAAATAATAAAGTTCGGGGA---ATAACCGATTACTGAAACAAT-----------------ATATTA---------CATA--ACAAATTTTAAATCATGTTATTTTCATTT--------------------------TAGAAAACGCAGAAAAAGGGAAAGAAAAAGA---AAAA----GCTCGTGGACTGACGTGGC----AATTCAACAAACGACTGCTCACATTAAGTGCATAGCTTTCTT
s caeRem4.Crem_Contig0  1313479 285 -  4500979 AAAGTTGTTCATGTTTCGATACATT-----GTCAAAT-TCTGATAACGAATTAGAAAAACAGTGGATATGGTCAAAGTGAGATA---AGAATTGGTAT-TGAACCAAATAGTGAGAAACTCAGAAAAGTTAGAGGATGAGCATG--AGAAATTCAGAACCATGTTATTTGCATTCAAACGTTCAATTATAATTGCa-----aaagcagagaggaaaaagcgaaaggaaagaa---aaagtcGTGCGCTTCCACTGACGTGGCAGCAAATTCAACAAATGGCTGCTCGCATCGAATGAGCCGTCGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    74758 278 +   386604 CATATTAGCCATGT---GGAAC----------CGAATCTTTAAAGGTgagtgagaaaaaagcaagaaa-----aaaatcagatagCTACCGTTGGATG-GGAACCAAA-----AGTATTAGAGAAATGTTA-AGggtgaaaatggaagaaattcAGAACCATG-TATTTGAATCGGAACGTACAATTATCGTTGCagaatgaagaaacagaggaaaagaggaaaagaaaaaagccaaagTGGCGCGTTTCCAATGACGTGGC----AATCCAACAAACGACTGCTCACATCAAGTGCGTCGTCGTTTT
i caeSp111.Scaffold622  C 0 I 296
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-156.000000
s ce10.chrX             4373404 31 + 17718866 ATTTTTTAAACAGAACAGCATGAAAAACAGt
s caeRem4.Crem_Contig0  1313764 22 -  4500979 TTC---------GACCGgcaggagaaagaag
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    75036 296 +   386604 I

a score=-2882.000000
s ce10.chrX             4373435  85 + 17718866 -ataaataaagttaagtttaaagtttaataaaa--aattaaaattttGCGAGCATTGGATGTTT---AAGA----------------AATTGAATTCCAATCTGAAA--------
s caeRem4.Crem_Contig0  1313786  77 -  4500979 aaaaacgaagag-------------cAACATAAGGAAGACAATAATTCAAGGATTTGAAT-------GAGA----------CGAATAAATTGAat--------ggaaatgtgaaa
i caeRem4.Crem_Contig0  C 0 I 553
s caeSp111.Scaffold622    75332 100 +   386604 -acaacTAATAGGAAATTGACAATTCAATAGAATCAAACAAATATTTCTAAACACTGAGTGTTCATAGAGAAATTTGCCTTCGACTAAAATAAAT------CAGGAA--------
i caeSp111.Scaffold622  I 296 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-338.000000
s ce10.chrX             4373520 29 + 17718866 AAGACGGAG-----GTTTTGAGT--TGAGA-------CCTCTA
s caeSp111.Scaffold622    75432 43 +   386604 TAGAAAGACCGCCCATTTTTAGTCATAAGATTTATCTCCTCTT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1313863 553 -  4500979 I

a score=1511.000000
s ce10.chrX             4373549 40 + 17718866 TACCTATACAGCTACG-------TTTCTAATCAGAAGATACAAAATT-
s caeRem4.Crem_Contig0  1314416 46 -  4500979 TATCTATACAGCTACGAA-AATACTTCTGACCGAGACATTCCAGATT-
i caeRem4.Crem_Contig0  I 553 I 25
s caeSp111.Scaffold622    75475 40 +   386604 CAACTATACAACTACGAATATTGTTTCTG--------GTTTCAGAATC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-380.000000
s ce10.chrX             4373589 20 + 17718866 TCTCACCTCGAGGCATTG---------AA
s caeSp111.Scaffold622    75515 23 +   386604 TC------CTAGACATCGTGATCCTACAA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1314462 25 -  4500979 I

a score=19329.000000
s ce10.chrX             4373609 367 + 17718866 --TTTGTGTGCTTCACATTATAATTGCCGCACGTGTATAAAATATTGCAGCCAGAAGAGTCAGAAACGTTATGGTACTTAGGAAGA---GGAACAATCGCAATTGAAAAATTATGATGAACGTTGGAATAAGCTTGTAGAAAAGATAAATCGACACCGGAACACAGCTAAAAGTTGAATTTACATTGAAGGTGGCTGAAATTAAATAAA-----------AATTGACAAACTTTATCAAAATTGACAATCCATATGCTCGCAAAGAATGCTTCGGAGGAAGTCGCCCAATGACCGGTATTTCAGTGAAAAATATGTAGATCAGCTCTCTAATTGAATTGTGATGCACACCAACACGATTCCAGTTATTACAGGAAATGCTGAA
s caeRem4.Crem_Contig0  1314487 352 -  4500979 --tttgtatgtttcaCATTTACCCGGATTCCAGCATACAATACATCGAGATCAGAACAATCAGAAAGGAAACGATAGCCATGAGGATTTGGAAGGATTTCGAGTGAACTGCAGTTAGAAATGTTGGAAGGAGTTTGTAGACAAGATAGATTGATACCGGAATACTGCTGGAAATAGATGTTTCTC---------TCAAAATCTATTAGA---------------AACTAACTTCAAAAGAATGGACAAGCCATAAGCTCGCATCGTATTTTTGTTAGGAAGCTTTCCAATTCCGGGCAgttcttcaaaattgaaatagatGAGTTCTCT-----GATAGTGATGCTCAACACAACAATGGTTGTTATCACAGGGAACGCTGAA
i caeRem4.Crem_Contig0  I 25 I 200
s caeSp111.Scaffold622    75538 356 +   386604 TTTTTGTATCATTCCCATTTACCTTGCAATCACCGCGCACTGGAGTGTTGTCAGAAGAGTCAGAGATGAAAGAGAGCCCAGAAAGATGTAGAAGGCAGTCGATTGGAATGCGTAAACCACTGATGGAAACATTTTATAGGCAAGGAACACCGAGATGGGAACACAGCTGAAA----------------------CCGAAACTTATTCAACTTTGAACGATAGTTAACGAACTTGAGCACGACTGATAATCCATACGCTCTGAGCGCATACTCGTTGGGTATCTGGTTGATCCCAGGAAGCTCGCAGAAAGTGATGAATACAATTTCTTT-----GACGGCAATGCAAGTAAGAACTATTCCGGTGATAAGAGGAAAAACTAAA
i caeSp111.Scaffold622  C 0 I 1267
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=0.000000
s ce10.chrX             4373976 418 + 17718866 TAAAACAAGATGTAGTCATATTTGGTTTCCTTttttggaaaccggcaacttcagcaatcgttggtttaaaaaaattttcggcgttctgcaatttcagcagtttccAAAACTGCAAGTGCCGCGCGCCGCTATTTGGAATCCTTGGGACGAAACAGTCCGGAAAAATCTAGCGTTGAGGTTACAATAAAAACTGCAAAATTCTGCAAAACTGATCATTTTTTGGCGTCCGAGACCAGAATTCGGGCTTTGCAAGTTTTAATATAGTGCGACCAAAATATTGATTTTAAAAAACTATCACATTACTTTTCAAAAAAGTATATCCATTGACAGCTCAGCACTGTTCCGCCAAGAATGTAAAAATATATGAAGAGATCTGCAAAAGCGCTTGGTTTTCGATTAGAGATCAGGATTTAACTTT
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    75894 1267 +   386604 I
e caeRem4.Crem_Contig0  1314839 200 -  4500979 I

a score=2657.000000
s ce10.chrX             4374394 72 + 17718866 TTACAATAACATTATCACAATAATTACTGTTAGCAACCCAAACATTATAACTTGATCAAGTTCGCATTCGTC
s caeRem4.Crem_Contig0  1315039 72 -  4500979 TCACAGCAACATAATCACTATGATGACAGTGAGAAGTGCAAACATGACGACATCATCAGTCTCACACTTATC
i caeRem4.Crem_Contig0  I 200 I 1122
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    75894 1267 +   386604 I

a score=0.000000
s ce10.chrX             4374466 978 + 17718866  
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    75894 1267 +   386604 I
e caeRem4.Crem_Contig0  1315111 1122 -  4500979 I

a score=513.000000
s ce10.chrX             4375444 84 + 17718866 TACTCAACTTGAAAAAAAATCATAAAAACATTTAGCAAACGAATGAAAAAAAATGAG----AGAATGCTTTTATCCGAGAGTGCTTTC
s caeRem4.Crem_Contig0  1316233 83 -  4500979 TACCGTACCCGAagaaaactcattgaaaaaaccATCAAA-----GTAAGGAATTGGGCAGTAAAATTCTCTCGACGCACGAGATTTCA
i caeRem4.Crem_Contig0  I 1122 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    75894 1267 +   386604 I

a score=15500.000000
s ce10.chrX             4375528 314 + 17718866 AAACGTCATACCAAAAAATGTTCTACTC--CTTAAATGGTCTGTAATTGGAGTTGAATAAAATGAGCGTAAAACTAATGGTTTTAAATCG---GGCACACACACACACATACACAACATTTTTTGCGTTTTTCTGTTTT------TGAATGTGAATACAA--------------------CGGAAATGTGTTTTCAAA---GAACAG-----------------TTGGATACGGTGGTGTCCAAGGATATTGCAGCAACCTTTGACGGCAACCAGTAGATG----------GGGAACAAAGCAAAAGATGGAATAGTCGTAAATTTTGTGGTGACGTTC-AAATTGGTTCAGTGCTCAATTTCAATGTTCTTTT--TT
s caeRem4.Crem_Contig0  1316316 335 -  4500979 AAACGTCATGCGGGA-AATTTAC-ACTGCCCCCAAATTTTCTGTAATTGGAGTCGAATCAAAAGCGCGTAAAACTAATGGTTTTAACCCGCCTCGCGCAC------------------TCTTTT---CCTCGCTTTTCTCATACAAAAGGGTGAGCATAAAATGTTGAAGAGGGGGAATGCAGAgccatgttttttttttcgaggagATGCACTAAAT-GTCGGTGAGACACGGTTA---CCCTTGACATT------ATCTATAGCAACAACAAGTAGGTGGATGCAAAACGGGAGCAgagcacagaaaaaaa-agttgtaaatcTTGCA-------TCTGAATTGGTTTACATTTCGAATGTCATGTGCTTTTgg--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    77161 344 +   386604 AAACGTCATACAAAAGAATGCGC-ACTG--CTCGACTTTTCTGTAATTGGTGTCGAATCAAAAGCGCATAAAACTAATGGTTTTAAGTCGTTGGGCacacattctcttttctcttttgttcttt---tctcgctttttt------ACGATTTGCACATAAAATAGTGGATAAATT---TGCATAGGCAtgttttgcag---aaaaagaatcacGAGATCtttttttGGACACGGTAG---CCATTGACATC------ACC--TGGCAACAACAAGTATATGGAAAATTTATGGGAACAGAGCACAAGATGTGA-GGTCGTAAATTTTATGCTGACGTTCAAAATTGGTTTACATCTCCGCccttgctctttttt----
i caeSp111.Scaffold622  I 1267 I 59
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-754.000000
s ce10.chrX             4375842 32 + 17718866 GA-----GCTTTTAGTGTCTGCTTCATTTGGAAATTT
s caeRem4.Crem_Contig0  1316651 29 -  4500979 taaaaacgtttttgaggGCAGGTTCA--TGG------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    77505 59 +   386604 I

a score=-539.000000
s ce10.chrX             4375874 30 + 17718866 GGAAAGAAACCA------------GAACAAAAATTAGAAGAC
s caeRem4.Crem_Contig0  1316680 28 -  4500979 GGAAAGAGAC--------------GGATAAATATGACAAGGC
i caeRem4.Crem_Contig0  C 0 I 223
s caeSp111.Scaffold622    77564 41 +   386604 GGAATGGAATCGTCATTTTCCAAGAGTTGAAAGTAAAGGAA-
i caeSp111.Scaffold622  I 59 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-162.000000
s ce10.chrX             4375904 150 + 17718866 ---TGTTTAAACTGAATTATATTATCTGAATGATTATTAA---TTACATTACGTTTTCTTTTCTTGTTCATTTACCATGATA-GTACTTTTAAATAATCCAAATAGTACCAGTAGTTTAAAACGTTAGGGTGTCTAAATTGACAAGTTTCACAAGAT
s caeSp111.Scaffold622    77605 118 +   386604 TTGTgtatgaagagaaaaatcgtatctcattgataaaaaaagCTGGAATCAGG-------GtcttgattattttttatgataCTTATTTTCACGTA-----------ACCACTAGTATAAA-------------TACAT--ATGAGTTTCA------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1316708 223 -  4500979 I

a score=-3447.000000
s ce10.chrX             4376054 76 + 17718866 TCACTAACAAAAGTGTTCTACTATTTTAACTTTTCA--------ATCGTGTTTCAAATATTTGTATTTAAATATTATACAAAGA-------
s caeRem4.Crem_Contig0  1316931 82 -  4500979 Ttagtaacaaaaaaagtttacttatttcattttttgttttttttagc--gGTAGGAATGATCGCCCCGAACTTTTGTGGGAGAG-------
i caeRem4.Crem_Contig0  I 223 C 0
s caeSp111.Scaffold622    77723 65 +   386604 ----------------TCGCCTTATCCTACTCCCAAGTTAATTGATCATgatatgaat----------attttttatgagttagaaaaaaa
i caeSp111.Scaffold622  C 0 I 93
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=-1048.000000
s ce10.chrX             4376130 127 + 17718866 TACAAATCTGCAGCAATGCTCATAGTTTTACCAAAT---------AAGTTCACTTTGGCA------CGCTACCAAAATTTGGCAGCTT-------------------ATCCATGTTTC-------TTATTTGTTTTATGTTCACTGTTATTGGAACGTACAAATTGAA
s caeRem4.Crem_Contig0  1317013 159 -  4500979 TAA----CTACAGTTATCGTTGTTGTCATGGAAAATTTCACCTAGAAGTAAACTTTGGAAGAATTGTGATATAGCACTTTGGTAAGTTGAGTTTGTACTAAAAAACCGTCTACCTTCCACTCGAATTATTAGTTTTCCTTTCACTT---TTGGAAGCTCTCATCTG--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    77788  93 +   386604 I

a score=13038.000000
s ce10.chrX             4376257  889 + 17718866  
s caeRem4.Crem_Contig0  1317172  908 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 17438
s caeSp111.Scaffold622    77881 1087 +   386604  
i caeSp111.Scaffold622  I 93 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=542.000000
s ce10.chrX             4377146 151 + 17718866 TTTTTCTGTCTTGCATAAAATGAGTTATGCAGCGTCAATCTATGGTTGGGAAA---ATATTTTGACGGCTGGAATGATGCAGGGACGCGCAAGTTATTCATCTCAAAATTTTTGGAACTAAAAAAAGTAAATTAAAAGTTTGGTTTCCGAGCCA
s caeSp111.Scaffold622    78968 141 +   386604 -TGCTCCGTTTGAAAT--AATGGTTTGTGttatgt---ttttttattaGGAAACCCACATTCCGA----TTGATTGATAAagcaaattcaaaaatatatatatattccttttttgaagaagaaaaatc---tgaaaaatctatttttcgcATCA
i caeSp111.Scaffold622  C 0 I 5338
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1318080 17438 -  4500979 I

a score=0.000000
s ce10.chrX             4377297 685 + 17718866  
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeSp111.Scaffold622    79109 5338 +   386604 I
e caeRem4.Crem_Contig0  1318080 17438 -  4500979 I

a score=609.000000
s ce10.chrX             4377982 15 + 17718866 AATTCTTAATCATTT
s caeSp111.Scaffold622    84447 14 +   386604 aattttcaa-cattt
i caeSp111.Scaffold622  I 5338 C 0
e caePb3.Scfld02_0      2603600 13212 +  4147112 I
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1318080 17438 -  4500979 I

a score=5439.000000
s ce10.chrX             4377997 105 + 17718866 ATCAAACACAATAGTTTATTCAAAATGATTCACAATAAAACCGTTTTC-TGTAAACATAGTCAAATCACTCAATAACGATTGACCAAAGACTAATGAC-GTAAAGTT
s caeSp111.Scaffold622    84461  96 +   386604 -ccgAACCGAATGATTTTATTCATATCGTTTAAGACACAACCGTGAGCTTGTAAAAACAATC----CATTTTACAA------AATATGGGCTACAGAAAATAGGGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2616812  97 +  4147112 ACCAAACCCAATGGttttattcataaatttcGAAGCACAACCGTGAACTTGTAAAACCAATC----CATTCGACAA------AATGAGGACTACAGATAGGAGCATT
i caePb3.Scfld02_0      I 13212 C 0
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1318080 17438 -  4500979 I

a score=1339.000000
s ce10.chrX             4378102 4 + 17718866 CATA
s cb4.chrX              9674691 4 + 21540570 CATG
i cb4.chrX              N 0 C 0
s caeSp111.Scaffold622    84557 4 +   386604 TATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2616909 4 +  4147112 TATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  289218 2043 -   375229 I
e caeRem4.Crem_Contig0  1318080 17438 -  4500979 I

a score=8036.000000
s ce10.chrX             4378106 81 + 17718866 -AAACAAAGGACCGGCAATATGCTCA-------------AG--AATTAACATAGGTGTGAGCA---CTTTTGAGTGAAATAAGCGTGTG--AACTTGTTATT
s cb4.chrX              9674695 93 + 21540570 -AAATGAAAAACCGGCAATTTGCTCATATTCGTGA----AA--GAATACAATACATGAGAACAAATGTCTCGAGTAAAATAAGCGCGTG--ATGAGTGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1335518 87 -  4500979 -AATCGAGAAACCGGCAACGTGATCAAATTCGTGAAAATAA--AGATACTAAACATGAGAGCA------TCAATTGAAATAAGCATG------GTGGAGAAC
i caeRem4.Crem_Contig0  I 17438 C 0
s caeSp111.Scaffold622    84561 87 +   386604 GTACA--AAAACCGGCAATTTGCTCAAA-----------AG--TGTTATAATATTAGAGATTGGGCATCTCTAGTGAAATAAGCATGATGAGGGGAAGAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2616913 91 +  4147112 TTACAGCAAAACCAGCAACTTGcccaaa-----------aaatagtcaaaaaataagagaaagtAGTTCTCTAGTGAAATAAGCTTGGGGTGTGGAGGAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  289218 2043 -   375229 I

a score=11621.000000
s ce10.chrX             4378187 148 + 17718866 TTCTATCACAGACT--AGTCACTTGAAG-----------ATAAATTTAAAAATACATAAGGACAGAATATAATTCAAGGCTATTGTATATTATAAAA--CAAA------GATGGTTGATGG---------GATTAAGGGTATGTGTGAGG--AACGA-GCGACCGGTTGAATAGATGATGA
s cb4.chrX              9674788 164 + 21540570 TTCTATCACagactaaaaaaaattgaaaaaaaggttccGATGGGATTTTAA-------GATACAT-GATGAAATTAAGGCTAGA-AACATAAACACA--GATAGGTCTGGTTGGTGGATTTTTTGTCAATAAT--AAGGTA--CATGAGT--GTGATGAGGACCAGTTGATAAAGTGATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1335605 142 -  4500979 TTCTATCACAGACT---AAACCTTGAAG---------CGGAAAACTTTTAA-------Agtaca---aaaaaatcaagactaat-aaaatgaacaaaatgaaatttttggggGGTAATTGATTTGT-----------GGTA--CATGAGG--ATGGT-ACGACCGGTCGAATAGATGATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    84648 131 +   386604 TTCTATCACAGACT--AAACacttgaaa-----------ttgaaattataattAC---ATGACA--AGACAAACTATG-------AGTATGAataca--gaaa------gaag---aattgagGGTTAGTGATAGAAAG-------------ATGAA-GCTACCGGTTAGATAGCTGATGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617004 145 +  4147112 TTCTATCACAGACT--AAAAACTTGAAG-----------TTACACTTA----------AGTACA--AGAAAAATTAAGGCTAAAAGGCATGAATACA--GAAA------TAAGGCAAATGTTGTGTTAGTGGGAAAAAGTA--CGTGAGTATATGAT-ACGACCGGTTGGATAGTTGATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  291261 113 -   375229 TTCTATCACAGGCA--GAACacttgaaa-----------atgaaaatttaa----------aaa--ggatcactaaagattaaa-aaaatgtacagA--TAAG--------------------------------GAAGGA--CGTGAGA-----AA-GCGACCAGTCGGTTAGATGATGA
i caeJap4.Scaffold17084 I 2043 I 34

a score=12218.000000
s ce10.chrX             4378335 35 + 17718866 A-TGTGGTGGGATTGA----TGGAGCAAATTACAAGAAAA
s cb4.chrX              9674952 39 + 21540570 A-TGTGttgtaaaaaaaagttggagcAATTTACAAGAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1335747 36 -  4500979 ATTGGGTTCTGATTGA----TGGAGCAATATACAAGAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    84779 34 +   386604 A-TGTGTTGCTAT-GA----TAAATGAAGTTATAAGAAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617149 35 +  4147112 A-TGTGTTGTGGTGGA----TGGAGCAAATTACAAGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  291374 34 -   375229 I

a score=66661.000000
s ce10.chrX             4378370 392 + 17718866 TTGGTCTTGACGTGT-T-------------AAAAGTGAGAGGTTGGATT--------------------GGGGGGAAGACACAACGG---GCTGA--AAACTTTTGACCGGGAAA---------TTGTTTCA----AT-TTGAATTGATTGAAAGGAAAAAAACATACTTGAAA--------AAAAAATTAAATTCA---AAACCAAAT-AATTTCTAGAAAATACTAAACA-----AGAATCAA--TGA-------AGCAAT-AGTATACAATGAGATAAGTTAGTTAAGTTTAAAATTTTAAAAAAAGAGAGGTTA--TG----GTTATGAGGAGGCTGACGCAGTTTGAGCCGACTGCTGCTCAGTCACAGATGGCACTGTAGCTCCGTTTTCATTGACCTGGCTCATGGGCTCGTTGCATCCAAACGAGTTTAACCGGTGTACGTAGCACAAGTTGCAGACACGAACCTGAAAA
s cb4.chrX              9674991 362 + 21540570 ATTAGAAAAGGGTTC-AGTGCACAACGGGGAGAggcgaattttcaaaaa---------------------------------aaccg---gagga-------------tggaaaa---------atgtttca----at-agAAATTG-----------------ATAC--GCAA--------GAGAGCTACAATAAA---CAACCgaataaaaatctaaaaaatactAAAGTGCAGAGGGATGAG--TAGAACATCGGGCAATGAATA-TCTTTGAGATAAATTAGTTAGTGGTAAAA--------------ATATGA--TTCTTCATCATGAAGATGCTGATGTTGCCTGAGCGGATGATTGCTCAGCTACCGAAGAAATGCCAGTGTTATTCTCGCTGGCTTGACTT---TGCTCGTTGCATCCGAAAGGATTGAGTCGATGCACGTAGCAGAGATTGCAGACGCGAACCTGGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1335783 348 -  4500979 AATGGATTAAGGCGC-A-------------AAAAGTGAGtgtttagagaaaaa----------------gag---aagacacAACGG---GAGGA--CTGTTTTCAACCGGGAAA---------TTGTTTTA----GT-AGAACTTG-----------------GTAC---------------AGAGATACAATAAA---CAACCGAATGGAACctaaaaataaactaaaaggCCG-GGAGTGAG--TTA-----TGAGCA---AATATTCAATAGGATAAGTTAGTTGG-----------------------AATGA--TG----ATCAGGAGGATGCAGATGCAGCTTGAGCTGTAGATTGCTCAGCAACGGAAGTCGCATTTGCACTATTCTCGGAAGCTTGGTTT---TGCTCGTTACATCCGAATGGATTGAGACGGTGAACATAACAGAGATTGCAGACGCGTACCTGGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    84813 339 +   386604 TTGGTCTTGAGGTGC-T-------------GAAAGTG---------------A----------------GAGCGTAGAACACAACGG---GTTTA--CAATTTTCAACCGGGATA---------TTGTTTCAGTTGGT-AGTTGCTA-----------------ATAC-----A--------CagagattcagaaaaaagaaaccgaaaaaaagactACAAAATACTGTGCTGGGGGATAATgag--caa----------a---aata--aattgagaTAAGTTAGAGAG-----------------------GATGA--TG----GTTAGGAAGATGCAGATGTTGCTTGAGCTGAAGAAGCCTCAGCGACAGAGGTTGCAGCCGGAGTAGCGTCGTTCGCCTGATTC---TGCTCGTTGCATCCAAATGGGTTTAAGCGGTGGACATAGCAAAGGTTGCAAACGCGGACCTGAATa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617184 339 +  4147112 TTGGTCTTGAGGTGCTT-------------AAAAGTGAGTGGGCGCgagagaa----------------gaaaggaagacACAACGGGGAGGACA--TTGTTGTAAACCGGGATA---------TTGTTTCA----AT-AGAAATTG-----------------GTAC-----A--------AAGAGATTCAgtc-----aaaccgaaaaaagagctA-GAAATTTTATAGTGACGGATAGAGAG----------------------------TGTGATAAGTTAATGAG-----------------------GAGGAACAG----CTCAAGAAGATGCAGATGTTGTCTGAGCTGAGGATGGTTCAGCGACAGATGTGGCGGCTGAATTGGCCTCATTGGTTTGGTTT---TGCTCATTGCATCCGAACGGATTCAGACGGTGAACGTAGCACAGGTTGCACACACGAACCTGAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  291408 358 -   375229 TTGGTCCTGAA---T-A-------------AAAACTACATACACAAATGAGAATTTTACACGATTCTCTGGAAAGAAATCACAACGG---TTTGAAAAAGTGGTAGACCGGGATGGGGCAGGGTTTGtttca----atgaaaaatcg-----------------atat-----agAACAGCCAAAATATTAGaatag---agaaagaaaaaaaaaagaaaagacacTG---------AAGATGaggtttg--------------aacatttttttaaaaaa-------ag-----------------------gataa--aa----atCAAGAAGAAGCAGATGTCGC---AGCCG------CTTCAGGGACAGTATTCACAGTTGGCAAATTGTCAGTTGCCTGGTTC---TGATCATTGCATCCAAATGGATTTAGACGGTGAACATAGCAAAGGTTGCAGACGCGGACCtaagaa
i caeJap4.Scaffold17084 I 34 C 0

a score=-239.000000
s ce10.chrX             4378762 9 + 17718866 ---AGTATTGTT
s caeJap4.Scaffold17084  291766 9 -   375229 aattgtatt---
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2617523 0 +  4147112 C
e cb4.chrX              9675353 0 + 21540570 C
e caeSp111.Scaffold622    85152 0 +   386604 C
e caeRem4.Crem_Contig0  1336131 0 -  4500979 C

a score=-11433.000000
s ce10.chrX             4378771 86 + 17718866 TACATGAGAACTAATGCATGAAAAAGTTTTCGGATAAAAAAAAAAATTTCAGAATGTAACCTTTGAAAATTCATTTTTGAGAGGGG
s caeRem4.Crem_Contig0  1336131 19 -  4500979 ------------------------------------AAAACCATCAACTGAG------------------TCA-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    85152 20 +   386604 -------------attc-------------------aaagtgaaaatagGAG----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617523  3 +  4147112 -------------ATG----------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  291775  0 -   375229 C
e cb4.chrX              9675353  0 + 21540570 C

a score=944.000000
s ce10.chrX             4378857 36 + 17718866 GTTAGTTACAGTCTGATATAAAAAGTATTAGTACTT
s caeRem4.Crem_Contig0  1336150 17 -  4500979 -------------------ATAAAGTCATAGTAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2617526 25 +  4147112 GTtagtt-----------tgaaaagttctaaTATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  291775  0 -   375229 C
e cb4.chrX              9675353  0 + 21540570 C
e caeSp111.Scaffold622    85172  0 +   386604 C

a score=-508.000000
s ce10.chrX             4378893 14 + 17718866 GTAACAGACGTGCC
s caePb3.Scfld02_0      2617551  8 +  4147112 CTTGCGGA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  291775  0 -   375229 C
e cb4.chrX              9675353  0 + 21540570 C
e caeSp111.Scaffold622    85172  0 +   386604 C
e caeRem4.Crem_Contig0  1336167  0 -  4500979 C

a score=-2569.000000
s ce10.chrX             4378907 78 + 17718866 CAAAAATGTTTAACAACTTT--TAAAAATTATGGTTTTCTAGGCCTAACATACAGTCTGATCCCTTTTGATAAAATTATC
s cb4.chrX              9675353 61 + 21540570 CAATAAGGTTCAACAAATTC-AGGAGCATtattctttttca------------------acttttttggttaAGATTCTG
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0      2617559 31 +  4147112 --ATCAGATTTGAAAAGCTCGATAAGCATTTTC-----------------------------------------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17084  291775  0 -   375229 C
e caeSp111.Scaffold622    85172  0 +   386604 C
e caeRem4.Crem_Contig0  1336167  0 -  4500979 C

a score=-2521.000000
s ce10.chrX             4378985 32 + 17718866 CTTTAAAATGGAATTAAATGGAAATTATATGT
s cb4.chrX              9675416 22 + 21540570 cctcagaagaaa---------aaattctgtg-
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    85172  9 +   386604 CTTTAAAAT-----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617591  9 +  4147112 CCTAAGAAT-----------------------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17084  291775  0 -   375229 C
e caeRem4.Crem_Contig0  1336167  0 -  4500979 C

a score=-324.000000
s ce10.chrX             4379017 37 + 17718866 TTGGGTACGTGTACCACATAAGGACCAAAAATTACTA
s caeRem4.Crem_Contig0  1336167 15 -  4500979 TTGCTTGCGTGT----------------------TTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2617600  0 +  4147112 C
e caeJap4.Scaffold17084  291775  0 -   375229 C
e cb4.chrX              9675438  0 + 21540570 C
e caeSp111.Scaffold622    85181  0 +   386604 C

a score=416780.000000
s ce10.chrX             4379054 734 + 17718866  
s cb4.chrX              9675438 756 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1336182 739 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    85181 721 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2617600 729 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  291775 706 -   375229  
i caeJap4.Scaffold17084 C 0 I 25

a score=11066.000000
s ce10.chrX             4379788 43 + 17718866 CGACTTGACACTCAATATG--TTGT---TTATTTCCCCCGTC-----------------------TCGTCC
s cb4.chrX              9676194 70 + 21540570 CGAGTCGACACTTTCTGTC-GTTGTTTATTATttcctccttcttcatcttgttcttcttctctttctctcc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1336921 43 -  4500979 CGAGGTGACACTTTGTGTC--TTGT---TTATTTCCTCGTAC-----------------------CTTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    85902 45 +   386604 CGACTTGACACTTTATATACGTTGT---ttatttcctctttc-----------------------tctgtC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2618329 44 +  4147112 CGCCTTGACACTTTCTACATGTTGT---TTATTTCCCCGTCC-----------------------CTTTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  292481 25 -   375229 I

a score=10484.000000
s ce10.chrX             4379831 259 + 17718866 C-----------CATCTCTC---ACTTTTCGCCAGATATATCGCTGCAACAATAAA----------TTACCTGGGATCGGTTTGCATCGGAATGATCGTTTTCACGCTTTT---ATCAAATTTCTTCT---GTTCTAATAATCTTGACG-----ATTTACACTTTTTTGTTTCTACTTGTAGAACATCAGAAGCCTGCA-CGTCATCGGTAATTTCATCATCACTTTCGTTTC---------TAGTCT-CATCG--ATATG---AGTG------TCTACTTCG---------CTTTCCGACGATTCTTCCATGTCAACATTGTCA
s cb4.chrX              9676264 258 + 21540570 accacacacta-catttctctctATATCCCCTTTCAAATGTTATTGTTGAAAACA--TTGAG----TTACCTTGGCTCGTTTTGCATTGGAATAATTATTTTGCTATGCTT---CTCGTGCTTCTTCT-------TAATCGCA--ACCA---------ATTGCTCCGCAGTCTCATGTGCCAAAGCTTGAAGAGTTGCCTGCTCGTC---------Cacgtcttcttcgtttt---------ctttcg-AGTTG--GACTC---AGTT------TCACTGCTG---------TCTCCTGACGACGCCACCATTTCAACGTTCTCG
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0  1336964 277 -  4500979 ACCCAACATTA-TATCTCTC-CCATATctcatttcatattttattcttgaaaacaatttgtt----ttACCTTGGGTCGCTCTGCATTGGAATGATTGTTTTGCCattctt---ttcgaaatctttct---GGTCCAACGGCAGCACTG---------AATCTTTGAGattcttgttttcaaactgCTCAGCCGTCACATCATCATCAGTT---TTAATCTCATTTACATTAT---------CGCTTG-AGTTT--GACTC---AGTCTCGACATCATTCTCA---------ACTTCAGAAGCTTCAATCATTTCAACGTTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    85947 285 +   386604 ------CACTATTATCCCCCAGCGTCTcttatttcatattttattattgaaaacaattt-------ttaccTTGGGTCGCCCTGCATTGGAATGAttgtttttccgttttt---ctcagattttcGTTTCGAGTCCAAGTGCCCTTCCA--TGGGCttgcatttt----tctttatctgCTGCTCGTTGAA---------CATCACTAGTGAGAGTCAGATCAGTTTCATTCTGTGAGTCGTCGATGGCAGTTGTAGACTC---AGTT------CCAATGCTGACGACATCACTCTCCGACGATTCTGCCATCTCAATGTTCTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2618373 281 +  4147112 --------CTATTATCCCTT--CGTCTcttatttctcattttattatGAACAACAATTT-------TTACCTGGGGTCAGCTTGCATTGGGATGATTGTTTTGCCATTCTTATCCTTCTGTGTTGGCTTTGGTTCCAGCAAACTATCCACTTTGCTCTGCTTTTTGGTGTCCTCGTCTTCAGTCTGGACAG---------CATCAGCAGTGAGATCAATGTCAGCTTCACTTTGTGCCTCTGCATTCG-AATTG--GATTC---AGTT------TCAATACTG------CCAGTTTCTGATGACTCAgccatttcaacattttca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  292506 229 -   375229 --------------------------TCATGTATCAAATTTCATCACAACAATCACTTCACTTCACTTGCCTCGGATCAGTCTGCATTGGAATAACAGTTTTGTCACACTT---GTGAAACTCCTTGG---TTTCCAGAGCTGGAATCG---------TGTTCTCATTGTTTTCCTGCTCAGTAGATCCAA-----------TCATT-------TCATCGTCGTTCTCATGCT---------CATCCT----TT--GCCTCACTATTT------TCCTCGCTG---------CTCTCAGAAACGTCTGGCATTTCAAC-------
i caeJap4.Scaffold17084 I 25 C 0

a score=-4538.000000
s ce10.chrX             4380090 17 + 17718866 GGTTCTTCGATGGTTTC
s caeRem4.Crem_Contig0  1337241 16 -  4500979 -TTCCCactatcatttt
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    86232  3 +   386604 -TTT-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2618654 16 +  4147112 -tttccactgTCAGTTT
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17084  292735 11 -   375229 ----CTCAGATGATC--
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9676522 36 + 21540570 I

a score=-5921.000000
s ce10.chrX             4380107 37 + 17718866 AGGAGATTCGGTGACTTCATTCGACGAGTTCGAGTTT
s caeRem4.Crem_Contig0  1337258 19 -  4500979 ------------agtttcgactGTTGATGCA------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    86235 29 +   386604 --GAAAT--ATCTGATTCGTCCGTTGAGGCAGA----
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  292746 23 -   375229 --------------CTTTCTCAGATGTTCCCATATCT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2618670 14 +  4147112 I
e cb4.chrX              9676522 36 + 21540570 I

a score=607718.000000
s ce10.chrX             4380144 720 + 17718866  
s cb4.chrX              9676558 729 + 21540570  
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1337277 725 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    86264 761 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2618684 768 +  4147112  
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17084  292769 729 -   375229  
i caeJap4.Scaffold17084 C 0 I 707

a score=-2011.000000
s ce10.chrX             4380864 22 + 17718866 AAATCGGTTGTTTGAAGATTGA
s cb4.chrX              9677287 15 + 21540570 GCA--AAATGTC-----AGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338002  5 -  4500979 -----------------gttgT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2619452  0 +  4147112 C
e caeJap4.Scaffold17084  293498 707 -   375229 I
e caeSp111.Scaffold622    87025  0 +   386604 C

a score=92066.000000
s ce10.chrX             4380886 137 + 17718866 TGACTGACAATGTA-----------------------------------TCTCACTTTGAGTAAGTCTCTCAAAAAATCCAATTGTTTTGTGACATCCTTTGCCAACGGTCGAATTAAATCAGACTCTGTCTCATGGTCAATAATGTTGGAACCAGCGGAAAGACACTGAAA
s cb4.chrX              9677302 166 + 21540570 TGTCTGATTTCGTTAGTGGACTGCTGTCAGTGGTATCTTGTA------AACTAACCTTGAGCAAGTCCCTAAGAATGTCAAGCTGTTTCGTCACTTCCTTTGCTAGCGGTCGAATCAGATCCGATTCTGTCTCGTGGTCAATGATGTTAGATCCAGCGGACAGGCACTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338007 150 -  4500979 TGAGTGATTATGTCGAT---------TCATTAATCC-------------ACTTACCTTGAGTAAGTCTCTGAGCAGGTCAAGCTGTTTCGTGACTTCTTTTGCCAACGGTCGAATGAGATCTGATTCCGATTCGTGGTCGATAATATTGGATCCAGCAGAGAGGCACTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87025 117 +   386604 -------------------------------------------------------CTTGAGCAAATCTCTGAGCATATCGAGTTGTTTCGTCACTTCCTTGGCCAATGGTCGGATTTGATCTGATTCTGATTCGTGGTCAATGATGTTGGATCCCGCGGACAAGCACTGAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619452 117 +  4147112 -------------------------------------------------------CTTGAGCAAGTCCCTAAGCATATCAAGCTGCTTTGTCACTTCCTTTGCCAATGGACGGATCAAATCCGATTCGGTCTCATGGTCGATGATATTGGATCCCGCAGAAAGACACTGGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  294205 132 -   375229 ----------------------------------------TAACCCGCAATGTACCTTGAGCAAATCCCGGAGCAGATCCAATTGTTTTGTCACTTCCTTGGCCAATGGCCTGATCAAATCCGACTCAGCCTCGTGGTCAATAATATTGGACCCAGCGGAAAGGCACTGTAA
i caeJap4.Scaffold17084 I 707 C 0

a score=151.000000
s ce10.chrX             4381023 3 + 17718866 TAA
s caeJap4.Scaffold17084  294337 3 -   375229 CAA
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2619569 0 +  4147112 C
e cb4.chrX              9677468 0 + 21540570 C
e caeSp111.Scaffold622    87142 0 +   386604 C
e caeRem4.Crem_Contig0  1338157 0 -  4500979 C

a score=-7044.000000
s ce10.chrX             4381026 32 + 17718866 TGTAAAGTTTTGGATTGTATTAATCATTTTCC
s cb4.chrX              9677468  9 + 21540570 -------------------TGAAATTGT----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    87142 25 +   386604 ---AGAACCT--GAT--TCTTAATCTGTTTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619569  2 +  4147112 ---AA---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  294340  0 -   375229 C
e caeRem4.Crem_Contig0  1338157  0 -  4500979 C

a score=-3255.000000
s ce10.chrX             4381058 59 + 17718866 TTACAAGGAAAAGTTTACGCTCACGGTTACACTTCCAAATGAAACCGATGTCATTCAAA
s cb4.chrX              9677477 10 + 21540570 ----------AAG--------------TGTACTT-------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2619571 17 +  4147112 ----------------------------ACACTT--------------TGTTATTTAAA
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17084  294340  0 -   375229 C
e caeSp111.Scaffold622    87167  0 +   386604 C
e caeRem4.Crem_Contig0  1338157  0 -  4500979 C

a score=-1326.000000
s ce10.chrX             4381117 68 + 17718866 AAGAGACTTTCCAACTAAGTAACTACAAAAAATTAATTGGCAGAAGAGCATTTCGGACAAGAAATAGC
s cb4.chrX              9677487 11 + 21540570 ---GGACTTTTCAA------------------------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2619588 41 +  4147112 I
e caeJap4.Scaffold17084  294340  0 -   375229 C
e caeSp111.Scaffold622    87167  0 +   386604 C
e caeRem4.Crem_Contig0  1338157  0 -  4500979 C

a score=0.000000
s ce10.chrX             4381185 3 + 17718866 CGG
e caePb3.Scfld02_0      2619588 41 +  4147112 I
e caeJap4.Scaffold17084  294340 0 -   375229 C
e cb4.chrX              9677498 0 + 21540570 C
e caeSp111.Scaffold622    87167 0 +   386604 C
e caeRem4.Crem_Contig0  1338157 0 -  4500979 C

a score=1926.000000
s ce10.chrX             4381188 4 + 17718866 TCTG
s cb4.chrX              9677498 4 + 21540570 TCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    87167 4 +   386604 TCTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619629 4 +  4147112 CCTG
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17084  294340 0 -   375229 C
e caeRem4.Crem_Contig0  1338157 0 -  4500979 C

a score=-10496.000000
s ce10.chrX             4381192 49 + 17718866 ACATTCTTCCATTCATTTTT----TCAATACATTAGAGTCTAAAATTTTTTAA--------------
s cb4.chrX              9677502 30 + 21540570 ----------atcccttttt----tgaa-----------------------aaaaaacgttttttaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338157 48 -  4500979 ATAtcttgttagtttttttt----tcaatatg------------acCCCTTAGAAAAgatctgt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87171 41 +   386604 AC-CCCGTCCagtcaatttt----tcaagata-------CTCAAACTTCTCAA--------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619633 46 +  4147112 GTACTCTTTGAAACACTTTTATCCCTAggcag-------ttcaaatttcacca--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  294340  0 -   375229 C

a score=-13394.000000
s ce10.chrX             4381241 112 + 17718866 GCCATTCTGCCTTCAAACTACTGAAAAAGTACACGGAAAATTTGAGAGTCGAGTTCC---GCTGCTAAAATTTTTGTGGTGACCTATGTAATCTGAACATAAGTTTTCAAAAGAC
s caeRem4.Crem_Contig0  1338205  51 -  4500979 ----ttctgt-----------------------------------------ttctcgCTTCCCACAAAAGTGTTT--------CTTAGTAGTTT---------CTcacaaaag--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87212  14 +   386604 ---------------------------------------------------ATGTCG---CCTACAAA-----------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619679  14 +  4147112 ---------------------------------------------------TGCCCG---GCCACAAA-----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  294340   0 -   375229 C
e cb4.chrX              9677532   0 + 21540570 C

a score=-4551.000000
s ce10.chrX             4381353 168 + 17718866 ATACTTTTCTTTTAGAAATCTGATTTTTTTTAATTTGATTTTTATTTCCGTGTCAGCACAATGTTACCGATCTTCAGGGGTAATATGTGCCAAAAAGTTTAAACTTTGACTGACTGTGAC-----TTCCTTGTTGTT-TCATCAAGACCCCCTCTCTACCCGTGTCTGGTACGC
s cb4.chrX              9677532  84 + 21540570 -----------------atattcccCCTGT--AGTTAGTTCAAATTT-------------------C-------------------------------CTTGTC--------TTTGCAACCACCACTCATTGTTTTCGTCGT-------------CTTCTAGTGTCTGGTACGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338256 102 -  4500979 ----------ttcagaaatctCAAACGTTT--GGCTACAAACAATTTTC---------------GAC-------------------------------TTAGTC---AATTGTTTGTGAC-----TTCCTTGTCATCCACGTGAACAAC------CTCGCCGTGTCTGGTACGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87226  73 +   386604 ------------------------------------------CGTTTTC---------------TAC-------------------------------CCAGTTGTAAACCATTTGTGAC-----TTCCTTGTCATCCTCTTGAACA--------CTCCCCGTGTCTGGTACAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619693  74 +  4147112 ----------------------------------------ACACTTTTC---------------TAC------------------------------TTTAGTTGTAAATTGTTTGTGAC-----TTCCTTGTCATCCTCGTGAACA----------CCCCGTGTCTGGTACGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  294340   0 -   375229 C

a score=179357.000000
s ce10.chrX             4381521 419 + 17718866  
s cb4.chrX              9677616 503 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338358 486 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87299 496 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2619767 464 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  294340 477 -   375229  
i caeJap4.Scaffold17084 C 0 I 358

a score=-11596.000000
s ce10.chrX             4381940 24 + 17718866 AATTTCT---------------------GAGAGCCAAGGAGGAAA------------------------
s cb4.chrX              9678119  9 + 21540570 ACTTTCC------------------------------------AA------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338844 45 -  4500979 ACTTTCTGGTTTTCTTGCTTCCTGtgttaattgaaaaaaggaaaa------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87795 36 +   386604 ACTTGCT-----------------------------AAAGAGAAA----TTTGGATCAGATAGAGCACT
i caeSp111.Scaffold622  C 0 I 66
s caePb3.Scfld02_0      2620231 36 +  4147112 --TTGAG-----------------------------AAAGTACAACGTCTCTGGCCCAA--AGAGCACT
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17084  294817 358 -   375229 I

a score=-9864.000000
s ce10.chrX             4381964 41 + 17718866 ---------TGGCCTTCTTAGTGCACTTTAATTTGTCGCACAATTATGCT------
s cb4.chrX              9678128 23 + 21540570 TGGA------------------------------GTCCCTGAAGTGTCTAAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1338889 56 -  4500979 ttgataTCTTTCCGGTACAAACCCAAGAACACACAACTCTGAATTTCTCAAAGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2620276 45 +  4147112 -----TGGTTTCCTTTGTTAATTGAATGATGGTcccccccAAGGGTGTCA------
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17084  294817 358 -   375229 I
e caeSp111.Scaffold622    87831 66 +   386604 I

a score=122752.000000
s ce10.chrX             4382005 116 + 17718866 AACTCACTAATGATATGTAAAACTCGATCTTGAGCCACCCGGAGCCTAGTGACCAGTGCATTGCATCTATCGGGATCACGTCTGCCGTCAAACGAGTCGAGTTCGCTTGCTGAAAA
s cb4.chrX              9678151 115 + 21540570 -ACTCACTAATGATATGTAGAACACGATCCTGAGCCACACGAAGTCTTGTGACCAAAGCGTTACATCTGTCCGGATCTCTTCTGCCATCGAATGAATCGAGCTCgcttgctgaaaa
i cb4.chrX              C 0 I 540
s caeRem4.Crem_Contig0  1338945 114 -  4500979 -ACTCACTAATGATATGAAGAACCCGATCCTGAGCCACACGAAGTCTGGTGACCAAAGCATTACATCTGTCCGGATCCCGTCTGCCATCGAACGAATCAAGCTCGCTTGCTGAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    87897 116 +   386604 AACTCACTAATGATATGTAACACCCGATCTTGAGCCACACGAAGTCTGGTGACTAAGGCATTGCATCTGTCCGGATCACGTCTTCCGTCGAACGAATCGAGCTCGCTTGCTGTAAA
i caeSp111.Scaffold622  I 66 C 0
s caePb3.Scfld02_0      2620321 116 +  4147112 AACTCACTGATGATATGTAACACCCGATCTTGAGCCACGCGAAGTCTGGTGACCAATGCATTGCATCTGTCCGGATCACGTCTTCCGTCGAACGAATCGAGCTCActtgctgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  295175 116 -   375229 AACTTACTTATAATATGCAAAACCCGATCCTGGGCAATGCGAAGTCGCGTGACTAACGTATTGCATCTGTCCGGGTCACGTCTGCCGTCAAACGAATCGAGTTCACTCGCTGAAAA
i caeJap4.Scaffold17084 I 358 C 0

a score=564.000000
s ce10.chrX             4382121 6 + 17718866 TGGAAA
s caeJap4.Scaffold17084  295291 6 -   375229 TGGAAA
i caeJap4.Scaffold17084 C 0 I 1331
e caePb3.Scfld02_0      2620437 0 +  4147112 C
e cb4.chrX              9678266 540 + 21540570 I
e caeSp111.Scaffold622    88013 0 +   386604 C
e caeRem4.Crem_Contig0  1339059 0 -  4500979 C

a score=-12709.000000
s ce10.chrX             4382127 183 + 17718866 TCATCAATTCCAAACTGCTCaatttatgaaatatcattttaaaatttctaattaaaatttttttgaaattt----tatttCGATTCAAATTTTGAGTTGGGAAAATTATGTTTC--CATGCTTC----GTTTTAAAAGTCGTAGATCAAAAAATA---AATTATTTCAGTTTTCTGTTTTAATTGTGTTAA-----------AAATA
s caeRem4.Crem_Contig0  1339059 112 -  4500979 --------------------------TGAAATA--------------ATGAGT----TTGATGTTTGATCACTTTCATTTTGACTGTCAGTATGTGTT-------TTAAGTTTGATAAGGggac----gtttt------------tcaaaaaaca---aa--------------------aaatgtgcgGAACTGTGGAACA-----
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold622    88013 104 +   386604 ---------------------ATAAGAAACATA-----------TTGTTGataagaaatgatttctgattc-------tttaAGTGTCTTTGTGTG---------TCAAGTTTA--GATGggtt-----tctt------------tcagaaaacaataag--------------------aaTTGTGTGGA----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2620437  88 +  4147112 ---------------------aagagagacctA--------------CTGattaaaattggtttttgattc-----------aCTGCCAATGTGTG---------TCAAGTTTGATAAtgtgttttcgatttt------------ttgaaaaaca----------------------------------------------------
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold17084  295297 1331 -   375229 I
e cb4.chrX              9678266 540 + 21540570 I

a score=0.000000
s ce10.chrX             4382310 27 + 17718866 TTCATATTCCATATTTGGCATCCTATC
e caePb3.Scfld02_0      2620525 16 +  4147112 I
e caeJap4.Scaffold17084  295297 1331 -   375229 I
e cb4.chrX              9678266 540 + 21540570 I
e caeSp111.Scaffold622    88117  0 +   386604 C
e caeRem4.Crem_Contig0  1339171 16 -  4500979 I

a score=-23510.000000
s ce10.chrX             4382337 783 + 17718866  
s caeRem4.Crem_Contig0  1339187 553 -  4500979  
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold622    88117 552 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2620541 605 +  4147112  
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold17084  295297 1331 -   375229 I
e cb4.chrX              9678266 540 + 21540570 I

a score=-6436.000000
s ce10.chrX             4383120 30 + 17718866 TGAATTCAAATTTGAAACA--GAATAGGAAAA---
s caeSp111.Scaffold622    88669 24 +   386604 TGTATTCTCTTTT--------TAGTAGTCATC---
i caeSp111.Scaffold622  C 0 I 30
s caePb3.Scfld02_0      2621146 12 +  4147112 CCCATTCCCCCC-----------------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  296628 35 -   375229 tgaatgaaaatcaaaaaaaggaaaaagacaGAAAT
i caeJap4.Scaffold17084 I 1331 C 0
e cb4.chrX              9678266 540 + 21540570 I
e caeRem4.Crem_Contig0  1339740  0 -  4500979 C

a score=112486.000000
s ce10.chrX             4383150 207 + 17718866 ------CAACACGT-AATTGATGA--GAAACGATTA---------AAAACAGTTGGGCAGGTT---------GT------------GGGTTTGAGAAAAAAAATTCAAATTTCGAAACAACTTACCAATATCATTCAACGCTGAATCAGCATAGTAGAATCGTGCAAGTGGCATCCAATCGTCTGGACGAGGTTTATTCCAAATTTTCCGGAAAGACTGCATTA------------CAATATCTG-AAGTTTA----------------TTGAAA
s cb4.chrX              9678806 217 + 21540570 ------CATTACAA-AATTGATG----------TCCTTTCATCAAGAAACAAAAGGACAGATG---------GCCATT-----------TTTGGgaaagaaatttccaa---------aacctaCCAATGTCATTCAGTGCTGAATCGGCATAGTAGAATCTAGCGAGTGGCATCCAATCATCTGGACGAGGtttattccaaattttacgGAAAGATTGCATCA------------caatatctgaaattaaatGTGACTCATATATGGGTGAAA
i cb4.chrX              I 540 C 0
s caeRem4.Crem_Contig0  1339740 203 -  4500979 ---------------AATTAATGAGGGGCATGATCC---------AAAACAAAAGGACAGATGTGAGACAGtgtcatttga-----aaatttg---aaaatatttc------------aacatACCAATGTCATTCAACGCTGAATCGGCATAGTAGAATCTGGCAAGTGGCATCCAATCATCTGGACGAGGtttattccaaattttccggAAAGATTGCATca------------caatatctgaaaataaa----------------ataaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    88723 205 +   386604 ------TGACAAGA-AATTGATGA-GGGCATTGCGG---------AAAACAAAAGGACAGATG---------GTCGAAAAACGatcgaatttg----aaaaatttc------------aacatACCAATATCATTCAATGCTGAATCAGCATAGTAAAACCTAGCAAGTGGCATCCAGTCGTCTGGACGAGgtttattccaaattttaCGGAAAGATTGCATCA------------caatatctgaaaacata----------------gaaagt
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2621159 201 +  4147112 ------CGACAAGA-AATTGATGA--GTTAAGgtgg---------aaaacaaaa-gacaGGTG---------GTGGCGTTTTAGacgaattc-----aaatatttc------------aacaTACCAATATCGTTCAATGCTGAATCAGCATAGTAGAATCTCGCAAGTGGCATCCAATCGTCTGGACGAGgtttattccaaattttccggAAAGATTGCAtca------------caatttctg-aaatata----------------aattat
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  296663 218 -   375229 CAAGGCTGACGTGATAATTGATGG--GAAGTGGAGG---------AAACGGATAGGACGGATG---------AACAGGTGGCTATCGAATGAC----ACAAA----------------GACTCACCGATATCGTTTAGCGTGGAATCTGCATAGTAGAATCGGGCGAGCGGCATCCAGTCGTCCGGTCGAGGTTTATTCCAAATTTTCCGGAAAGACTGCATCATTAGCTGAGTCTCACTCACcg-aaatttg----------------ctgaaa
i caeJap4.Scaffold17084 C 0 I 1998

a score=11993.000000
s ce10.chrX             4383357 346 + 17718866 TGTA-------AATTATAATTTCTGGTTTCCAAAAACACCAAAAAAAAATGCGGAAGAACGAAAATTGAGAAAGGAAAAAGAGAAACGAGGA-A----CCAAACAAAGAAATTTGAAA------AATTT-----TACAGGGGTATACTTTA---------TACACACGTCAT--------------------------GCGAAGAAAATTGAAAATTGCAG--------CTTGGA------------------AAGAAGAAGAGCTAC---------------TA-----------GAAGAGAACATTTCAAGAATCAAAAG--ACAAAAT----TGGTCGTGGTGAAAAAG---------GT-TTATCA----GCCTATCTGGACAGCAAACATGATAAGACATGGAGCGGGAGGAGTAGTAAGG--Tggggggg---------ggggggg---ggggggAGCGAGATGGCTTTTCTGTGCATAGTGGA-------
s cb4.chrX              9679023 366 + 21540570 TTGAAGgaatgaatt---------------------------aaaaaaaagaagaagaagaagtagtaacaaaagaaacgaaaagacaaagg-a----agaaaaaagaaaattataaaaaagagagagc-----cTTAAGTGTATGCTTTA--GATGGAAATGACTTGTCACCG-GGCTTCAGATGAAGA--------GGAAGAACTGAATAAAACAGAAG----------GAGA------------------AagaaaatgctctaaaatttATTCCTGGTTTAATTTATTCCTCTTGTAGAACATTTCA-----TTTCAA-TGCGGAAA----TGGAGATAGTGTGGaaggagaaaaattt-ttatcaggaCGACGATCTTGACAGCAAACATGATaagaaaat-------------------g--aggagaaa---------gaGATGA---AGAGACTTAGA-AAAGCTTTTC---GTTTCGGGGT-------
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig0  1339943 373 -  4500979 ttta------gattt---------------------------aaaaaaatgaatagaatgaCAACGTAATAAGAAGAATGAATACAGAAAGG-AGACGAAAAAAGAGTAAATTATAAA------AGAGC-----ATTAAGTGTACGCTTGA--GCGTCAAAAGAATCGTCATT--GGctttagaagaagaaacaaatggGGAGGACATGCGAGAGTAGGAG----------GAGAGT----------------AGGAGCATCTTCTAG---CTGCTCCTAAAATA--TTAT-----TTGTAGAATATTTCAAGAATCAAAAA-GGCAGAAA----TGGAGATAGTGTGGAGG------AGCGT-TTATCA----GACTATCTGGATGGCAAACATGATAAGAAAAG------ATGAAATAG-AAAG--AGGGGGAACGAGAAACGGAGATAG---AGAATCAGAGA-GGGGCTTTTC---GTGCTGTGAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    88928 321 +   386604 t----------aat-----------------------------gaaaaaggag-----------tttaacaaaaaagacg-----gcaaaag-a---gacaaaagGGGAAATTATAAG------AGAGC-----AATAAGTGTATCTTTGAAAGCATGAATAGACTCGTCATTTTGctactagaaaaa-------aagaagaagaaaaaagaaaaagaggg----------tgGAGTC-----------------GAAGAAGCTCCAAAACTT-----------------------TTGTAGAACATttcaagaatcaaaaa----gGCAATATGTGGGGATAGTGGTGAAG----AAAACGT-TTATCA----GACTATCTGGACAGCAAACATGATAAGAAAGC-------------------G--GGAGGAGA---------GGGACGAATCAGAATCAGCGACACGGCTTTTC---GTGCTGTGAATATC---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2621360 369 +  4147112 ttca-------aatg---------------------------ggaaaaaggag----------aagtaaCGAATGGGAAG-----ACAAAggaa---gacaaaagaaaaaattataag------gAACCAAACGAATAAATGCACGTTTGAAGGCATGAATAGACTAGTCATCGCGTCTccaagaaaagaaactgaaaaaaaggaaaaacgaaacaaaaagaagccacaaaaggagtcataaaagaacaaaaatgaaaaatgctcCTAAATTT----------TA-----------TTGTAGAACATTTCGAGAACCAAAAAAGGCAGAAATGTATGGGG----------AG----AAAACGTATTATCA----GCCTATCTCGATAGCAAACATGATAAGAAGGG-------------------AGCGGAGAGGG---------AGGACGAATCAGAATCGACGACACGGCTTTTC---GTGCTGTGAATATCAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I

a score=-1722.000000
s ce10.chrX             4383703  9 + 17718866 GGTGGTGGT-------
s caeRem4.Crem_Contig0  1340316 10 -  4500979 AATCAGTGTC------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2621729  9 +  4147112 -------GTCGTAGGT
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679389 60 + 21540570 I
e caeSp111.Scaffold622    89249  0 +   386604 C

a score=-1978.000000
s ce10.chrX             4383712 27 + 17718866 GGTGAAGAG--GGGGGGGGGGGGGGGGCT----
s caeRem4.Crem_Contig0  1340326 29 -  4500979 ----GGTTCGGTTCGGACGACAGGAGGTTTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    89249 27 +   386604 AGTGAGTAC--CCCGGTTGATGGGGTGTC----
i caeSp111.Scaffold622  C 0 I 29
e caePb3.Scfld02_0      2621738 22 +  4147112 I
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679389 60 + 21540570 I

a score=102876.000000
s ce10.chrX             4383739 490 + 17718866  
s cb4.chrX              9679449 440 + 21540570  
i cb4.chrX              I 60 I 235
s caeRem4.Crem_Contig0  1340355 540 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    89305 520 +   386604  
i caeSp111.Scaffold622  I 29 C 0
s caePb3.Scfld02_0      2621760 481 +  4147112  
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I

a score=-3138.000000
s ce10.chrX             4384229 19 + 17718866 GAAGTGTACTGGGACTTCT----------
s caeRem4.Crem_Contig0  1340899 20 -  4500979 GAAG-----GGAGGTTCTtgggttt----
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    89825 12 +   386604 ----------GAGATCTTGAGA-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2622241 19 +  4147112 ----------GAggtttttcgggtttttt
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I

a score=-2823.000000
s ce10.chrX             4384248  88 + 17718866 ATTTCAATATATATGTACCCA---GTACGCCAATCGGAAGTTAATTCTGGCCTTTTTACGAATGTCTAGCAGAGCATGTTTTT------AAGACTAG-------------------
s caeRem4.Crem_Contig0  1340919 107 -  4500979 -tttcaaaaaatacgcCTCCT---ATCCGCCAGACAAAAATCTGtcctttcgtttttttaaa-----aactcaaaaagcaGCCGACGTAGAGGCGCATAGGAAGTCAGAAAAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    89837  92 +   386604 ATTTCAACACTTCCCTTTATTAGAATCTCCCAgttagaaa---atgttttcttttcccagCATG--TAACTCAAAAAGCTTTTTGCacaaagattga-------------------
i caeSp111.Scaffold622  C 0 I 22
e caePb3.Scfld02_0      2622260 103 +  4147112 I
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I

a score=15395.000000
s ce10.chrX             4384336 61 + 17718866 GGTAAGAAAGTAAAAGTGCAAAAAA--TCCAAA----AAAAAAAAGCTTTTTTGACTTGCAAATTTT--------
s caeRem4.Crem_Contig0  1341026 66 -  4500979 -ATAAAAGagcaaaagttcaaaaagatttCGAATTCGAAGGAactccttttttgaattgcaaATGTT--------
i caeRem4.Crem_Contig0  C 0 I 89
s caeSp111.Scaffold622    89951 69 +   386604 GATGAGAGAgcagaagttcaaaaagatttcaaattccatagaactccttttttgaattgcaAATTCGC------T
i caeSp111.Scaffold622  I 22 C 0
s caePb3.Scfld02_0      2622363 73 +  4147112 ATTGAGAGAgcagaagttcaaaaagatttcaaattccatAGAA--CCCTTTTTGActtgcaaatttgaaaatggt
i caePb3.Scfld02_0      I 103 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I

a score=2267.000000
s ce10.chrX             4384397 22 + 17718866 GACGGAGGCATGCTTTTG----AACC
s caeSp111.Scaffold622    90020 21 +   386604 GACGCAGAC-TTTTTCCG----AACC
i caeSp111.Scaffold622  C 0 I 57
s caePb3.Scfld02_0      2622436 25 +  4147112 gaCGCAGAC-TTCTTCCGTTCCAACc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I
e caeRem4.Crem_Contig0  1341092 89 -  4500979 I

a score=436.000000
s ce10.chrX             4384419 34 + 17718866 ATGTAGTTCAAGATCAGAAATCTTTATTTTTTTG
s caePb3.Scfld02_0      2622461 17 +  4147112 -----------------aaactttcattttcctg
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I
e caeSp111.Scaffold622    90041 57 +   386604 I
e caeRem4.Crem_Contig0  1341092 89 -  4500979 I

a score=0.000000
s ce10.chrX             4384453 497 + 17718866 GAAATCTCTTCAGAAAAAAAGACAaaatacatatataatagtcctaaatgactggatattttaatataacactccgaaaaattttaacatttttttaaaaatttcagtcaaaattttggaaaattgccaagttttccaaaaatgtggactttttgagtaatttcgggaatcgctgcagtttgaacttctagaataaaccaataataaaagtaactaaaacccaattaagatatgaaactggtagaaaaaacatttggccgactttcagaattatgatcgaaaaactgagttttcacaacttttggatgggactagaagtgaaagattttaaaatgtttttgaaaagctttacaacgacatttgttctttaaaacaaTGCACTCGCTAAAGATTCGTAATTCAACCATAACCCGATCTCAGTTGCCTATTAATTTCAATAAATACATTTGGAAATCTTATCGAATATCCGTTTTAATTTTTGAATCCTCAAATTATTG
e caePb3.Scfld02_0      2622478   2 +  4147112 I
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I
e caeSp111.Scaffold622    90041  57 +   386604 I
e caeRem4.Crem_Contig0  1341092  89 -  4500979 I

a score=522.000000
s ce10.chrX             4384950 34 + 17718866 CAAGAAGAAAATCGAAAAATTCAGCACA--------------GTAGAT
s caePb3.Scfld02_0      2622480 48 +  4147112 caacagaaaaaccaaaaaactctAGACATAATGAGTTGCTCTGTTGAA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e cb4.chrX              9679889 235 + 21540570 I
e caeSp111.Scaffold622    90041 57 +   386604 I
e caeRem4.Crem_Contig0  1341092 89 -  4500979 I

a score=715.000000
s ce10.chrX             4384984 21 + 17718866 TATCAAAAAATAAAAGTATAA
s cb4.chrX              9680124 21 + 21540570 tatcagaaagaggagaaatga
i cb4.chrX              I 235 C 0
s caePb3.Scfld02_0      2622528 18 +  4147112 cctgagaaagaaaaagaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e caeSp111.Scaffold622    90041 57 +   386604 I
e caeRem4.Crem_Contig0  1341092 89 -  4500979 I

a score=703.000000
s ce10.chrX             4385005 19 + 17718866 AGACTGAGAAGAAAAACG---------T
s cb4.chrX              9680145 17 + 21540570 -----aagaagaaaaaag-----aaac-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1341181 24 -  4500979 ag---atgaagaaaaaagatataaaaa-
i caeRem4.Crem_Contig0  I 89 C 0
s caePb3.Scfld02_0      2622546 15 +  4147112 ag---aagaagaaaaacg----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I
e caeSp111.Scaffold622    90041 57 +   386604 I

a score=24268.000000
s ce10.chrX             4385024 174 + 17718866 ATTAAAAAAAAGAAGGAAGAGCCGAAGGTCATTGTTAACTCGTTTCGCGTCATTAGTGACTGCTGGA------GTGTGTGT-GAATGA---------------------GAGTGTAAATGAAA---AAGGGG--------------GTAGTGTTGGTTAAAGAAGCAGGAGG-------------------CGCCGGCATGCAGAAATCCAAGACAAAAACGTTAAT--TTTTTCAAA--TC
s cb4.chrX              9680162 214 + 21540570 acgaagagagCCAAGG-----------------GTCAACACGTTTCGCATCCTTAGTGAGTCTTAAAAATAAGATGAGTGTGAAATGgtgaaattgaatgaaatgaCTCTGGTGTAAATGAGGAGCAAAGAGTCCCGACGACAATTCAAATGGGAggagaggaaaagaaaaaccaaCAGAAGCGGCGTCAGCtcaa--gagaagaa-------gaaaaaacactaat--tttttcgcaattc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1341205 161 -  4500979 agaaaaaaagcgaagGATGAGCCGAAGGTCATTGTCAACTCGTTTCACGTCATTAGTGGCTGTTAGA------GTGTGTGTGAAATGA--------------------ATGGTGTAAATGAAAGCCGGAGGG--------------CAAGCCCGAGAAGAGAAGA--------------------------CTACG--AAGCAGAa-------ggaaaa--actaat--ttttttgaa--tc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    90098 145 +   386604 atgaaaagagaaaacgaaaagccGAAGGTCATTGTCAACTCGTTTCTCGTCATTAGTGTCTGTTTGA------GTG---------TGA---------------------TAGTGTGGATGAAA---GAAGAG--------------------CGAGGAGAAAGACAA-------------------------------TTGTGTAG-------GCAGAAGAAACagccattttttcagaatc
i caeSp111.Scaffold622  I 57 C 0
s caePb3.Scfld02_0      2622561 154 +  4147112 ----------agaatgaAGAGCCGTAGGTCATTGTCAACTCGTTTCGCGTCATTAGTGGCTGTTAGC------ATGTGTGT-AAATGA---------------------TGGTGTAAATGAAACACGAAGGG--------------------gtagtaaaaaaagaaacaga-------------------agccg--atggagaa-------gcaaaaaaactaat--ttttttacgAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  296881 1998 -   375229 I

a score=83189.000000
s ce10.chrX             4385198 194 + 17718866 AAAAAGAGGAACGAAGCCATTT------------------TCTCGACG--AAAATGCAATCCGGGGGGGGGGGGGGGGAGTC------------GGAAAGAGATGGAGGGAGAG-AGGACAAAGCAAGCAAAC-ATCC-AAAG-----------ACAGCAAAAAACCGAGAAAAGAGAGCAAGGCAGCAGCTAGTGAGCC-------------------------TCC-----AAAACAGGATCGTTGACC-AAATGAGGCTCATTTATGA
s cb4.chrX              9680376 214 + 21540570 -aAAACAGGAACGAAGCCATTTTTTGCTGTTGGCTGCTGCTGTCGACGAAAAAATGCAATCCGGGGCGGTCTCCGAGATGGT-------------GATGGTGGTGGTAGTATGG-AGGACAAAGCAAGCAAAC-ATTC-AAAG-----------ACAGCGAAT---ACGAAAGACAGAAAAGG---GAAACTGGAGAGCT-----------------CGCGCCCACCA-----AAAACAGGATCGTTGACC-AAATGAGGCTCATTTATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1341366 168 -  4500979 -aaaagaGGAACGAAGCCTTTTTT----------------CGTCGACG-AAAAATGCAATCCGGGGCGGTC-------------------------------------GGAAAG-GGGACAAAGCAAGCAAAC-ATTCAAAAG-----------ACAGCGGAA---TAGAGAAAGACAGAAAG---GAATCTGGAGAGCT-----------------C-------CCC-----AAAACAGGATCGCTGACCAAAATGAGGCTCATTTGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    90243 175 +   386604 -aaaaaaggaacGAAGCCATTTT-----------------CCCCAACG-AAAAATGCGATCCGAGGCTGAC-------------------------------------GGAGGAGGGGACAAAGCAAGCAAAC-ATTC-AAAG-----------ACAGCGAA----TAGAGGAAGACAGAAAG---GAAACTGGAGAGAC-----------------AGAGCC--CCCCACCAAAAACAGGATCGTTGACC-AAATGAGGCTCATTTATGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2622715 167 +  4147112 -AAAAGAGGAACGAAGCCATTTT-----------------TCTCGACG--AAAATGCAATCCGGGGCGGTT-------------------------------------GGAGGA-GGGACAAAGCAAGCAAAC-ATTC-AAAG-----------ACAGCGAA----TCGAGGAAGACAGAGAG---GAAACTGGAGAGA------------------AATGCT--CCC-----AAAACAGGATCGTTGACC-AAATGAGGCTCATTTATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  298879 230 -   375229 aaaaagaaagacgaa-------------------------cGACCAAG-AAAAAATCGGACGAGGAAGGAAAGAGCGGAGACATGTTGAACGGAAAACGCAGACTGACTGACGG-GGGGCAAAGCAGGCAAACAATTC-ATAGCAGCAGCCAGCACAGCAAA----GAGAGAAA-ACAGAGAG---AGGACTGgggaggcaaaaaaaaagaaagaaaagaaccGAATC-----AAAACAGGATCGTTGTCCTAAATGAgcttttttgatga
i caeJap4.Scaffold17084 I 1998 I 200

a score=-1930.000000
s ce10.chrX             4385392 145 + 17718866 CATAAA---AAGAAGAAGAGGGCGTGATAAC-A-----GCAACCGGAGAGAA-GGAGTGTGATGAGACT----AGGCAGGG---GACATTGCTGGTGCA---CATTAGGTTATTAA-AATCGGAAGTAGAAGGGTTCGTACATGACCAAATATCATTTTAA---------AAAAA
s cb4.chrX              9680590 147 + 21540570 ---AAAACGACGA-------CGCATGATAACGGCGGGAGTGATCGGAGGACA-AAAGAAACAGAGAGTGTCGGAAGCACCGAATGACAATGCAAGTGCGATGTATTAT---------CGTCAGCG--AG-TGGTCATTAATAAGAA-----AGCACAAGTACTCTGCTCCAAgga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1341534 119 -  4500979 ---AAA---ACGA-------GGCATGATAACAG-----GCAAAcggag-------agaatgagagaacG--AGCAACCGCACAGGACATGTCTGGTGCAATGTACTATTCAATGGGGTGTCAATG---G-CAGTCATTTATATGA-------------------------ATGAa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    90418 122 +   386604 ---AAA---ACGAC------AGCATGATAACGG-----GCAACCGGAGAGAG-AGTGACATAGAAAGAGCAGAAAGCCTCG---GTCAATGTTGGTGCATTGTACTATTTTATGAG-CACTGGCG--AGTTGGTCATTCATATGAA-----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2622882 128 +  4147112 ---AAA---ACGA-------GGCATGATAAC-G-----GCAACCGGAGAGCGTCAGGACACAG----------CAGCCGCG---GTCATTGTTGGTGCAGTGTACTATTTTATGAG-CATC--CG--AGTTGGTCATTTGTATGAATAGA-AGCATTTGGA---------AAGAA
i caePb3.Scfld02_0      C 0 I 251
e caeJap4.Scaffold17084  299109 200 -   375229 I

a score=-6475.000000
s ce10.chrX             4385537 36 + 17718866 CGTTTCAAAAATTTTTGGAAAA----------CTGTTTATTTTAAG---------
s cb4.chrX              9680737 46 + 21540570 ---------gattttcagaaggaagCGCTTAATTGAGAACCTATAGTTCACTGGA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1341653 36 -  4500979 ---------ggtttttaaaagt----------ttgctATACTTTACTCCTTTGAG
i caeRem4.Crem_Contig0  C 0 I 208
s caeSp111.Scaffold622    90540 11 +   386604 ---------------TGGAAGT---------------------------ACTG--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2623010 251 +  4147112 I
e caeJap4.Scaffold17084  299109 200 -   375229 I

a score=-8280.000000
s ce10.chrX             4385573 195 + 17718866 TCAAAAAGCAGGTTAG----ATCTCACACATTCTTTTAAAAATGTTTAAAATGGTC---------ACATTTTAACATTGTATATAGGGTATCAAACATGCAAAACCGCTTTAGATTTCTGGAAAATTGATGCAATCTGCTCTATTACCACTTTTTGACTCGGAATCAA----ACTTTTGCACAATTTTTTAGAAGCTGTATAGAAATGGTGT
s cb4.chrX              9680785 124 + 21540570 -----TTTCTAGGAAG------gtt--------cttggaaatttcaaagagcAGTC--------------------TGATGAAT--CATATCAAacc--------------aaattt----gattttgattcAATATGATGCATGA--------------GGAAGAAGTCTCATTCATACACCA--------AAGC----TAATCCTGA---
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    90551 163 +   386604 ACAGAAATCGAGTGAGTGATATGTTACTTTTTACTTGGCACTTTCAAAGAACGGTCACACGCGAGAAATTTTCACATGCCGAGT--GGTATTGTata--------------agttttct-gaattttcaggtggaagaaaaaatca--------------ggaagaaa----aatattgaac----------aaGT----GAGTCATGGTGT
i caeSp111.Scaffold622  C 0 I 15
e caePb3.Scfld02_0      2623010 251 +  4147112 I
e caeJap4.Scaffold17084  299109 200 -   375229 I
e caeRem4.Crem_Contig0  1341689 208 -  4500979 I

a score=-5268.000000
s ce10.chrX             4385768 16 + 17718866 TTAGttatataaaaat----------
s cb4.chrX              9680909 17 + 21540570 -----TAAATAAGCGTGCGAAA----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    90729 18 +   386604 --------ACACCCATAATCACCGAC
i caeSp111.Scaffold622  I 15 C 0
s caePb3.Scfld02_0      2623261 11 +  4147112 --------ATAGCTATA-------TC
i caePb3.Scfld02_0      I 251 C 0
e caeJap4.Scaffold17084  299109 200 -   375229 I
e caeRem4.Crem_Contig0  1341689 208 -  4500979 I

a score=-27530.000000
s ce10.chrX             4385784 115 + 17718866 ------actt--------------------tttt-------tgaaaaaaaaataaaGATATTTCTAAACTGGATAAGTAGACTCTACAAGAGCGAAAATGCGGAAATAT--------------GCAAAAAGAACAA--------AAAAGCAGCCCACAGACTTTTGTGCA
s cb4.chrX              9680926  92 + 21540570 ------ACAG--------------------ATTT------------------------TGGATTCAAATGGAA------------CAGATTTCCGGTTCTTTGAAGGAC-------------GGAAAATGTAGTCATGGTGacgaatgaaaaaat---gaattttgccCA
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0  1341897  83 -  4500979 ------ACTA--------------------ATcccgagaagaaaaaagcaagCTGA-ATGAAAACAAGCTGAG------------CCAACGGATATATTTCCGTTGAAC--------------GAAAATGTAGTCA----------------------------------
i caeRem4.Crem_Contig0  I 208 C 0
s caeSp111.Scaffold622    90747 140 +   386604 ACTTGTATTCTGATAGGATATTATAGCTTTATCC-------AAAATGACGAACTAA-ACTAATTCAGATTAACGAATTTGATTC-CTGATCGTCAATTTGTGTTAATGCCGAAAAACCAGAACGAAAACAgaacta--------aaa-ataatat---gAA---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2623272 104 +  4147112 ATCTCTATTC--------------------ATTC-------GAAATGACGAGCTAATCCTAATTTAGACTCAA------GATTC-ATGATCTCCAAATCCTAGAAATAT------------ACGAAAACAGAACTA--------AAATCCGATCT---GAC---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  299109 200 -   375229 I

a score=-746.000000
s ce10.chrX             4385899 14 + 17718866 TAGTGGCGTGCTGG
s caeRem4.Crem_Contig0  1341980 14 -  4500979 TAGTGACGAATTCA
i caeRem4.Crem_Contig0  C 0 I 56
s caeSp111.Scaffold622    90887  2 +   386604 ---TG---------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2623376  0 +  4147112 C
e caeJap4.Scaffold17084  299109 200 -   375229 I
e cb4.chrX              9681018 35 + 21540570 I

a score=101.000000
s ce10.chrX             4385913 22 + 17718866 TAGCCATAGTTACAAAATTGAC
s caeSp111.Scaffold622    90889 22 +   386604 AAGTCATAGTTGTCGAAATTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2623376 18 +  4147112 GAATCTTCGTT----CAGTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  299109 200 -   375229 I
e cb4.chrX              9681018 35 + 21540570 I
e caeRem4.Crem_Contig0  1341994 56 -  4500979 I

a score=-5249.000000
s ce10.chrX             4385935 35 + 17718866 -----TAAAAATACAATTTGCAAAAAGGAAAAAAAAT----CTC
s cb4.chrX              9681053 33 + 21540570 -----TAAGAATGCATTCTATTactgg---aaaaaatgatg---
i cb4.chrX              I 35 C 0
s caeSp111.Scaffold622    90911 21 +   386604 TGACCGAATTATACAT----------------AAGAT-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2623394 22 +  4147112 TGACCAACCGATTCATC---------------AAGAC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  299109 200 -   375229 I
e caeRem4.Crem_Contig0  1341994 56 -  4500979 I

a score=6206.000000
s ce10.chrX             4385970 57 + 17718866 AATACCAGTAATGAATCCAGATGACAAAGTGGCAACC------------GTAGTACGAA------AATGTTA-----GAC
s cb4.chrX              9681086 62 + 21540570 -----------------aagacAA-GAAGTGACAATTTTTGTGATGGTAGTGGTACGAAGGAGTGAGAGAGATAGATGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1342050 54 -  4500979 -------AATATTAGTAAAGATGACCAAATGACAATT------------GTGGTACGaa------aaaaaGATAGG-GAG
i caeRem4.Crem_Contig0  I 56 C 0
s caeSp111.Scaffold622    90932 54 +   386604 GTTATCTGATATTAGTCAAAGTGACAAACTGACAATC------------GTGGTACGAA------GGAA--------ACG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2623416 54 +  4147112 GTTCTCATTTATTAGTGAAGATGACAAACTGACAATT------------GTGGTACAAA------GAGA--------ACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  299109 200 -   375229 I

a score=111041.000000
s ce10.chrX             4386027 393 + 17718866  
s cb4.chrX              9681148 415 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1342104 393 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    90986 391 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2623470 409 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  299309 370 -   375229  
i caeJap4.Scaffold17084 I 200 I 1776

a score=11378.000000
s ce10.chrX             4386420 132 + 17718866 TTTA----CTAG-ATAGAAAAATATGGAAAAATGTCGAGTC--------GAGTCAAATGGT---G--AGAGTTAAAGAACAG------------AAAACAAAAACAGACATGTTTTGAAATGTTTTTCTTTA-GTTTTT-----------------TCTCTTTT-TTTTTCGCGATG-AATT
s cb4.chrX              9681563 153 + 21540570 ttca----cgcG-ATCCTGACA----GGGAAATGTCGAGTTGAGGGACAGAGTCAAGTGGAGATGATACAGttgagaaggaa--------gaaaaaacaaaaaacaaaaatgttttc-------cgtGTTCAATTTTATATTGCCTCCCAACCAACCCTTCTCTACCATCTCCACGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1342497 123 -  4500979 tttA----CGCG-ATCCTGACA----GGGAAATGTCGAGTC--------GACTCAAATGAA---GATAGAGTTGTtgaagaa--------cagaaaaacaaaaacaaaaatgtttt-----------------ttttat------tcctatccg--tgttcttt-tcatttccaatg-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    91377 127 +   386604 tttAAGGCAGCGTATCTTGTCA----GGAACATGTCGAGTC--------AACT------GG---AAAAGAGTTGTATAATAGaacacgaagaaaaaaacaaaaacagaaaagtgttc-----------ttct-tgttat-----------------tcttttct-ttatatCCAAGTT----
i caeSp111.Scaffold622  C 0 I 36
s caePb3.Scfld02_0      2623879 123 +  4147112 TTTA----CGCGGATCTTGACA----GGAAAATGTCGAGTC--------AAGTCAAGTGGA---GGAAGAGTTGAAGAATAg----------gcaaaacaaaaacaaaaatgtgttc-------tcttttca-tgtttt-----------------ttaccctt-ttatttctcattc----
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17084  299679 1776 -   375229 I

a score=-194.000000
s ce10.chrX             4386552 23 + 17718866 TAAGGGCACCACATATTGTTTTT----------------
s cb4.chrX              9681716 39 + 21540570 CAAGGACaaaaaaaGTGATCCTCATTAAAGATTGTTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1342620 34 -  4500979 CAAGGACACCAGTCGAGATCCTCATC-----TCTTTTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2624008 23 +  4147112 CAAGGACATTACTCATGATCCCT----------------
i caePb3.Scfld02_0      I 6 I 14
e caeJap4.Scaffold17084  299679 1776 -   375229 I
e caeSp111.Scaffold622    91504 36 +   386604 I

a score=46743.000000
s ce10.chrX             4386575 194 + 17718866 CAATCAGATAATGAAGTTT----TTACCTTGGCATACGAATTTATCACACG---------AGGAGG------GTCAGTCTGG-TTTTTTGTTCAATCGTGATTTTCGATAATACACATACGAAAAGACCAAATT----GAGA-GGAGTCATGTGACTAG--GAATGAATGGGAAAA-----ATAGGAGCGAAAAAAC----------TGATCAGCAGAATTTGAACTTTTCATATT
s cb4.chrX              9681755 169 + 21540570 GA-------AGTTCCTTTCCCTATTACC-TGACG---GTATTTATCACCAACCGGTGGTCAGAAGG----ACACCGGTCTGGttttttt----AGTCgtgatttttgataatatacAC-ACACCAGaccaaaat----gaga-aaagtcATGTGACGGACTTAGTGAATGGAAATA---ATATGGGACACAACACcg---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1342654 210 -  4500979 CAATCAGATAATGCAGTTTTCCCCTACC-TGACA---GTATTTATCACAAG--AGGAGCGAGGAGG-------TCGGTCTGG-TTTTTT----AGTCGCGATTTTCGATAATACACGCGAGAAGAGACCCAAAT----GAAACGAAGTCATGTGATTgg--gaatgaatggaaaaaaatagatgGAACATAATGGAGAAACGATCA-CGAATTGG-AAtgatgaacttttgaaatt
i caeRem4.Crem_Contig0  C 0 I 304
s caeSp111.Scaffold622    91540 184 +   386604 AAATCAGATAAT---TCT-----TTACC-TGACT---GTATTTATCACACG---------AGAAGG----GCATCCGTCTGG-TTTTTT----AGTCGTGATTTTCGGTAATACACGAGACAAGAGAACAAAAT----AAGA-GAAGTCATGTGACTGT--GAATGAATGGAATAA------TGgaacgaaatgaaa--------a-tgatcagGCAACTgtgaacttttcatttt
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2624045 195 +  4147112 AAATCAGATAATGAAGTT-----TTACC-TGACA---GTATTTATCACAGG---------GGAGGGCGGAGGTCGTGTCTGG-TTTTTT-----GTCGTGATTTTCGATAATACACACGAGAAGagaccaaaatgaaaaaga-aatggcaTGTGACTGT--Gagtgaatggaaaaa------tgggacAAACTGAGA--------ACCGATCTGGTAACCATGaacttttcatatt
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17084  299679 1776 -   375229 I

a score=-845.000000
s ce10.chrX             4386769 65 + 17718866 TTTCCATATTGAAAAGTAGGAAAAAATGAGTGTTTTCCAACCATCTAAACAATGTAAATATTTTT
s cb4.chrX              9681924 19 + 21540570 --------------------aaaaaatgatc-------------------aat--aaATA-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    91724 35 +   386604 ----------------t---ggaaagtaAACGTGTTTCT-----------AATGCAAATATTTTT
i caeSp111.Scaffold622  C 0 I 207
s caePb3.Scfld02_0      2624240 38 +  4147112 ----------------tgaagaaaaataaatttgtttgg-----------aatgcaaatattttt
i caePb3.Scfld02_0      C 0 I 245
e caeJap4.Scaffold17084  299679 1776 -   375229 I
e caeRem4.Crem_Contig0  1342864 304 -  4500979 I

a score=0.000000
s ce10.chrX             4386834 10 + 17718866 CTGGAAAGTC
e caePb3.Scfld02_0      2624278 245 +  4147112 I
e caeJap4.Scaffold17084  299679 1776 -   375229 I
e cb4.chrX              9681943  0 + 21540570 C
e caeSp111.Scaffold622    91759 207 +   386604 I
e caeRem4.Crem_Contig0  1342864 304 -  4500979 I

a score=-5800.000000
s ce10.chrX             4386844 695 + 17718866  
s cb4.chrX              9681943 428 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2624278 245 +  4147112 I
e caeJap4.Scaffold17084  299679 1776 -   375229 I
e caeSp111.Scaffold622    91759 207 +   386604 I
e caeRem4.Crem_Contig0  1342864 304 -  4500979 I

a score=-1605.000000
s ce10.chrX             4387539 35 + 17718866 -GCTGAAATTACACAGAAAGAAGAACCAGGTTAAAG
s cb4.chrX              9682371 15 + 21540570 CGTAAAGAATATGTT---------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    91966 24 +   386604 -GCTAAAATTACAGTAGAATGAAAG-----------
i caeSp111.Scaffold622  I 207 C 0
e caePb3.Scfld02_0      2624278 245 +  4147112 I
e caeJap4.Scaffold17084  299679 1776 -   375229 I
e caeRem4.Crem_Contig0  1342864 304 -  4500979 I

a score=-526.000000
s ce10.chrX             4387574 4 + 17718866 ATTC-
s cb4.chrX              9682386 3 + 21540570 -TTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1343168 4 -  4500979 ATCT-
i caeRem4.Crem_Contig0  I 304 C 0
s caeSp111.Scaffold622    91990 4 +   386604 -TTTC
i caeSp111.Scaffold622  C 0 I 11
e caePb3.Scfld02_0      2624278 245 +  4147112 I
e caeJap4.Scaffold17084  299679 1776 -   375229 I

a score=4678.000000
s ce10.chrX             4387578 64 + 17718866 AGTGATCAT---TCAGAAAATGTATCAACAAGTCACAAATCAGG-GGCAAACG------AACGTGATAGTCATG
s cb4.chrX              9682389 63 + 21540570 AACGATCACCAGAAGTAAAC-----CGAAGAAAACCGAAGGA---AACAACTGATGACAAAT---AACGACTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1343172 65 -  4500979 AGTGATTAT--GTCGGAAAA-----CAACAAATGACAAATGATCCAGTAACTG--GGCAAATGTGATAGTCACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    92005 57 +   386604 AGTGATTAT--Gtcggaaaa-----caacaaaagacAAATCATCCAGTAACTA---------TCAATAGTCAT-
i caeSp111.Scaffold622  I 11 C 0
s caePb3.Scfld02_0      2624523 64 +  4147112 AATGATTAT--GACAGAAAA-----CAACAAGTGACAAATCATCCAGTAACTGG-TGTGTATTTGATAGTCA--
i caePb3.Scfld02_0      I 245 C 0
e caeJap4.Scaffold17084  299679 1776 -   375229 I

a score=108818.000000
s ce10.chrX             4387642 276 + 17718866 AGAATGAGTAACCAAAAAATTG---GG---------GAAATAGGCGGAAGGCCATTAA--TGGCCGGGGCCTCCAAGTACAGTCAG---TC-GAAACGACTAACTAACT-----AAAAATCTGGCGCCCATTTAGCCATTTTAGTCATTTG------GGCTGTCAACTCGATTATGC---AAAAGCCGGTTCTCACTGGTAGA--AAGAAAGAGAGAGAGAAAG---------ACCGAAAAGACTGACGA----------------ATTGAGAGAATGACGGAGAA---AGAG--GGTTTATACTTGAC---AAA-GGATGCATATATATATATATTAATATCA
s cb4.chrX              9682452 281 + 21540570 AGTGATAGTAGTCTGTAGA--G---AC------------------------CGATTAA--TGGG------------GTAAAGTCAGCGTCC-CGAACGACTAACTAACT-----AAAAATCTGGCACTCATTTAGCcattttagtcatttttcccCCTCCTGTCAACTCGATTATGCAGAAGAAGCCGGTTTTGTGGTAGAGATGGTAGGAGGGAAACAGGGAGAAATCGACAATTGGCAATACGAAGAAAAAAGACTATCGAGCGGTGGAAATGGCAAGGGAAAA---CGAAATGG--TATACTTGACaaaaaa-aGATGC--------GTATATTAATATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1343237 256 -  4500979 AGAGTGAGTAAtccaaaaactg---acaaaagaaatggaaaatggaataGGCGATTAA--TGGG-----ACCCCGAGTACAGTCAG---CC-TAAACGACAAACTAACT------AAAATCTGGCGCCCATTTAGCCATTTTAGTCATTTT------GCCTGTCAACTCGATTATGC---AGAAGCCGGTTTTCTGTTGTAGA--ATCGAAGGGAGAATAG------------ATTGGC------AAGAA-----------GAGTGGTGGA---------GGAGAA---AGAG--GG--TATACTTGAC---AAT-GGATGA--------ATATATTAATATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    92062 268 +   386604 -GAGTGAGTAACCCAAAAT--GGGcaa----atgaaagagaagaaaatagccGCTTAA--CGGG-------TCCAAGTACAGTCAGC--CC-CAAACGATCAACTAACT------AAAATCTGGCGCCCATTTAGCCATTTTAGTCATTTT------GCCTGTCAACTCGATTATGC---AGAAGCCGGTTTCCTGTAGTAGA--Aacgaagaggaaaaaga-----------tcGGGCAGAATGAATAA-----------AAGC-GAGGAGAAATAAAGAGTGAA---AGAG--GGCTTATACTCGAC---AAA-GGATGC--------ATATATTAATATCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2624587 253 +  4147112 ----TGAGTAACCAAAAAT--G---AC----AACACAATGAATGAATTATCCGCTTAATGTGGG-------CCCAAATATAGTCAGT--CCGAAAACGACCAACTAACT------AAAATCTGGCGCCCATTTAGCCATTTTAGTCATTTT------GCCTGTCAACTCGATTATGC---AGAAGCCGGTTTTCTGTAGTAGA--AGcgaggagagaaaaag-----------attggcagaatgaatga----------------gaagaggaaTCAAG---------AGAG--GG--TATACTTGAC---AAA-GGATGC--------ATATATTAATATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  301455 252 -   375229 AGAATGAGTAACCAAAAAT--G---AA---------------------CATCATTTTA--CGAG-----GGCACAAATGTAGTCAG------AAAATGAATACCAACCTTCTTCTAAAATCTGGCGCCCATTTAGCCATTTTG--------------GTCTGTCAAATCGATTATGT---ATAAGCCGGTTTCCTGCggtgaa--aagaaagaaagaaaggcag---------aaagaaagaaagaatga----------------GCGGCAAAATGAGAGGGAAATGGTGAG--AG--TATACTTGAC---AAATGGATGC--TTATACATATAATAATATCA
i caeJap4.Scaffold17084 I 1776 I 3175

a score=-16212.000000
s ce10.chrX             4387918 361 + 17718866 GTTTGTTTCATGT--------CA-AATGCGAAATTGAC---GCAAGTCGGCTTTTTT--------------CTCATTCAGGGAGGAATCTATGGTTTTTGGGCTGTAC----------ATATAATACGATAATCGTTCGCTCTATTTATCTCATAGATTTTGTTCTGCGTTGTTTCT-ACGTATATAT-------------CAGTAACTT-TTTATATAAAATTTTACAAATTGAATGTCGTATTTTCTTCACTTTCAAATGTTATAACTTGAGTTATTTGAAAGATTCAGTTTTATAATCAGCAGCAGT---GTTTTTCGTAGTT--TTTCCACAA-------------------AAAAAAAACAGTGAC--AAACACCAAAAAAT------TTACATAAAAAATGC-TATTCATTAAATAAACC--------AATTTCGAGTAA-------------AAAAGTA-
s cb4.chrX              9682733 312 + 21540570 GTTTGTTTTATGTTTCAATGCCGAAAAGCGATATTGGCGATGcgaatcgttttttttttcgttttattttACA--------ATGGTTACTATgggttttggattttgatggAAGGGTCGTTTAATACGATAATCGTTCGTTCAGT---------------------GAATCGTACTCTATTCGATTCT---------------Ttggcct-t----tt----tttcaaaaga-gacGGTGCtaatgacttttttttc-------------------------------tgttgttggattgatttgaata---ttcaaaacagttgaaacatcacaa-----------aaacagaaaagaaaaacag----------ggaatcaaaa----------------------TGGTTTTTACTGATC----------ATCCTCGTGTG--------------ACTAGATA
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0  1343493 364 -  4500979 GtttgttttatgttttaaTGCCG-ACAGCGAAACTGAC---GCAGGTGGTCTTTTTT--------------CA--------TTGGAATCTATAGTTTTTGGGCTTCGACGAAGAGA--GGATAATACGATAATCGTTCGCTcagtttt----attgtttcaacTGGGAATCGGATGC-ACCCGATTCG---------------CTTTTCT-TTTACTT----CTTCAAGAGA---------TGattattctgttttca----------------------gaagaaaaagttgttctATTGAACTGCA-A---CTTGAATTTGCTG--ATATTATTC-----------AAATAGggagaaaaaataacttt--caacggaaaaaaaacagacacGACCGCCAAGATCACTAGTCCTTGCTGAGTCTTCAATTGAACTCTCAGATGTTAGCAAAGTGTCTACCAGAGA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    92330 304 +   386604 GTCTGTTTTATGTTTCAATGCCG-ACAGTAAAACTGAC---Gcaattcagttttctc--------------cCTTT-----ACCgaaattatagtttttggGCTTTACTGAAGGG---GTATAATACGATAATCGTTCGTTTCATTCT------------------GGTCTGTACTC-ACCCGAGTAT----------AACGACTATTCTATctgattgaaattttgaaat----------tgatgattttg--------------------------------------tttttgtgttcaAAGTCAAC---TACGTGTTTATTT--TTAACATAC------------------------AAATGCTATC--AAACGGcatgaaaa--------actagaaagaTTA-CA------ACATAAGCTTTGATTGAACTCGAAACTTC-------------AAAAGGA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2624840 340 +  4147112 GtttgttttatgtttcaacGTCG-GCAGCGAAATTG----------TCGTTTTTCTC--------------CA--------ATAGAA---ATGGTTTTTGGGCTTTGCAAGAGAG---GTATAATACGATAATCGTTCGTTTCATT------------------------TGCCTAC-ACCTAACTATACTTTGATTGAAcctacatttt-tttgtttgaaatttcgaaa-----------tgatgaTTTCGATTCT-----------------------------AATAGTTTTGTGTTCAATAGCactgtatgtgtgtgtgttt--ttgtCACACTAAAATGACTCAAAATGCAAGGTATAATGCTATCAGAAATGTCACAAACA--------ATTCTGAAGATTA-CAAAATTTACATAGGCTTCAATTGAACTctggagttttca----------aaaaggg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-6339.000000
s ce10.chrX             4388279 40 + 17718866 ATACACTTACAAACTTATATGTA--------------------CGTCTTCAGACTTACAC---
s caeRem4.Crem_Contig0  1343864 21 -  4500979 ----------------ATCCAGT-------------------TAGTCTACAGAATG-------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    92634 41 +   386604 GTCTG--TAACAAATGATTCAGA--------------------AGTCTACCAAAACTTGAGAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2625180 63 +  4147112 gTGTGCCTAACAAGTGGTTGAAATCGAATTCAAGACGAAAGTTAGTCTACAAAAACTTCAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  301707 3175 -   375229 I
e cb4.chrX              9683045 34 + 21540570 I

a score=52320.000000
s ce10.chrX             4388319 224 + 17718866 -------------------------TCAGTACTCTACAGAATCAAACTAGAAGTA----TTTGAA--GTATCTCACGTGAAAATGAAAATGA----ACAAAAAATGTAGGCGAAGTGTGTGTGTGTGTGTGTGGCAA---GAGGGCTGGAAATGG-AGGAGAACGG-----AAAAGGT------------AGTGAACGACGACGAAAGG--------AGTGTGACTAATAACCTGTATAG-------GCATGACTACGG-------GGGTCGAGAATATCTTAGGCCACGATTGAAAAAAGA
s cb4.chrX              9683079 278 + 21540570 tcagcaaaaaaaaactttaaagaaATT--ACAcctacaaa---aattgagaattcgcTTTTTCAAGTGTGTCTCACGTGAAAACTGAATGAACAAgaggcgagaagaagaagaagtaaca-AAAGGGGTTGAAGGAAAGAAAAGACTGGAAATGG-AGGAGAACGG-----AAGAGAA---GAGGAATG--GCGAACGACGACAAAAGGACGACAAAAGTGTGACTAAAGACCTGTATTGAACAGGTGCACGTCGGTGG----CCGAG-TAGGGAGAAACCACGGCCATAGCTGACAATA--
i cb4.chrX              I 34 I 1
s caeRem4.Crem_Contig0  1343885 228 -  4500979 --------------------------------CCTAcaat---aattcagaattc----tttcAA--GTATCTCACGTGAAAACTGGA--------AGACAGGAGAAAAAATAAGTGGTT-AAAGTGTATGAGAGAGActgaaaacgggaaaatg-aaaagaacggcaaacgagcgaa---aaagaaagaagcgaacgaCGCCTAGAGG--------AGTGTGACTAATAACCTGTATAGAACGGGTGCACGTCTGTGG----CCGAGATTATTAGAAGCCACGGCCGT------Caaga--
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold622    92675 209 +   386604 -------------------------TC--TAATCTACAAA---AATTgggaaatt----tttcaa--gtatCTCACGtgaaaactgga--------agaagGGGTGGTGAAGAAGTAAGAGAAAGTGTATGGGAAAGACtggaaacgagaaaatggaagagaacgG-----AAAAGGG----------GAAGCGAACAACGATGAAGGG--------AGTGTGACTAATAACCTGTATAGAACAGGTGCACGACGATGG---CCGGGAATGTTCAAAAA-----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2625243 224 +  4147112 -------------------------CCATCCACCTACAAA---AATCGTCAATTC----TTTCAA--GTATCTCACgtgaaaactgga--------agaagagATGGTGAAGGAGTaaaaaggagtgtatgggaaagactggaaacgggaaaatgaaagagaacgg-----aaaagagggaaaagacaGAAGCGAACGACGACAAAAGG--------AGTGTGACTAATAACCTGTATAGAACGGGTGCACGACGATGGCCCCCCGAGATTCTTAAAAA-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-3981.000000
s ce10.chrX             4388543 18 + 17718866 -----------------TCAAAGATATCT--TC--AAAT
s cb4.chrX              9683358 22 + 21540570 -----------GATATCCC----TTTTTTGGTC--AGGT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622    92884 33 +   386604 cccccccGGGccatat-tc----attttt-atcagaaac
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2625467 28 +  4147112 CCAC----AGTCCTAtctc----tttttt-atc--aaat
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17084  301707 3175 -   375229 I
e caeRem4.Crem_Contig0  1344113 27 -  4500979 I

a score=-395.000000
s ce10.chrX             4388561 54 + 17718866 GATGATTTATCAAATCTTCT---------------TTTTTGTTGTTTCGGCTATTTGGGTCATTGC-GTG-------
s cb4.chrX              9683380 64 + 21540570 ---GATCCATC--TCTCTTTGAATTAGGTCATttctttttataatttttctgatatattt--------TTCTCCCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1344140 59 -  4500979 GATGATTtatc--attctct---------------tttttttcatctcaacgatataggtcattag-atatttcttt
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold622    92922 40 +   386604 GATgatccatc--atttttt---------------cttt------------gaaataggTCATTAT-GCG-------
i caeSp111.Scaffold622  I 5 I 125
s caePb3.Scfld02_0      2625500 41 +  4147112 GATGatcgatc--atttttt---------------gttt------------taaatagGTCATTATCGTG-------
i caePb3.Scfld02_0      I 5 I 12
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-14291.000000
s ce10.chrX             4388615  91 + 17718866 --------TTT--TTCAATATTTGCC-------TTT--TTATCTATCTCTAACATATC-AAAAATTTCATT-ATTTTTGAAG----------AAATTTCATTATTCACA----TTTTTGAAAATAG----------------------------------------
s cb4.chrX              9683444 119 + 21540570 GATATCATCCC------CTGCGCGCAGT---GATTT--TCATCAA----CATCTTATG-AGAAA----ACT-AGCTCTAGAT----------ATTTCGTACTACTACTAATACCActacaaaa----------------actttcaaagtgaaaagtgtttggtaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1344199 148 -  4500979 gattttatttCGTTTTGATACGCGCCGTTTCAATTTG-TCGGCTA--TGCGCCCTATC-ATAGAT---ACTGATCTTCAGAC----------AAAAGACtcaatgaaaattcatttttcgaaatatgtTGAGAACTAGTACTACCAAGGTGAAAAGTG-TTGGTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2625553 129 +  4147112 -------TCTC--TTTGATAACCGCCGATTCGGTTTGATTGACTA--TGCGCTATATCTAAAGAT---ACTGATCTTTAAACCAAGCTGGTTAGTCAGTAAGATGAAGG----------AAAAGACGGCGAGAAAAAGTACTACCAAGGTGAA-------------
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17084  301707 3175 -   375229 I
e caeSp111.Scaffold622    92962 125 +   386604 I

a score=-4138.000000
s ce10.chrX             4388706 35 + 17718866 -------------------ATGCGAAA-AAAGTGGGTCAACAACATTTTAAGTGG------
s cb4.chrX              9683563 42 + 21540570 -------------------aaacgcgaaaaaatgggtcaacaTTGTGTCGCGCACCAGCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1344347 40 -  4500979 -------------------GAACGAAACGAAATGGGTCAACATCGTTTTGCG--CCCGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    93087 35 +   386604 AGGTGAAAAAAGTAGGtaaaaacgaaacgaaatGG--------------------------
i caeSp111.Scaffold622  I 125 C 0
s caePb3.Scfld02_0      2625682 28 +  4147112 -------ATGTGTTGgtaaaattgaaacgaaatgG--------------------------
i caePb3.Scfld02_0      C 0 I 86
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-1371.000000
s ce10.chrX             4388741 42 + 17718866 -----------------------------AAGCAGTTTG--ATA------AGTTTCTATTGATTTCATAATTATAAATT
s cb4.chrX              9683605 50 + 21540570 -----------------------------TTACTGTTTGAAAAAGAGGTTGATTgtcaagaattttaaaaatatatgtt
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0  1344387 39 -  4500979 -----------------------------TTACTGTTTG--ACAGACGTCGGTTGCCAActatttcaa---------tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    93122 62 +   386604 GTCAACATCGTTTCGCAGCCTTCCCGACGGTACTGTTTG--ACGGCGGTTGGTTGCcatcaatt---------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2625710 86 +  4147112 I
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-1636.000000
s ce10.chrX             4388783 24 + 17718866 TAGCACGTTCAATTTTGCGAGGTT
s caeRem4.Crem_Contig0  1344426 23 -  4500979 caaaaggTTTTCTATTCAAACAT-
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold622    93184 12 +   386604 -----gtttcttttttc-------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2625710 86 +  4147112 I
e caeJap4.Scaffold17084  301707 3175 -   375229 I
e cb4.chrX              9683655 37 + 21540570 I

a score=0.000000
s ce10.chrX             4388807 14 + 17718866 ATAGCTATAACGGT
e caePb3.Scfld02_0      2625710 86 +  4147112 I
e caeJap4.Scaffold17084  301707 3175 -   375229 I
e cb4.chrX              9683655 37 + 21540570 I
e caeSp111.Scaffold622    93196  0 +   386604 C
e caeRem4.Crem_Contig0  1344449 14 -  4500979 I

a score=-8773.000000
s ce10.chrX             4388821 25 + 17718866 GACAAATCGATATTTTAAATTTC------GG
s cb4.chrX              9683692  6 + 21540570 -------------------------GGCAGG
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0  1344463  6 -  4500979 -------------------------TTCGAG
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold622    93196 29 +   386604 --caaacagGTATACAACGTTTCCGAGagac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2625796 30 +  4147112 -gaaaaatagtaTCTCAAAATatcggaaatg
i caePb3.Scfld02_0      I 86 C 0
e caeJap4.Scaffold17084  301707 3175 -   375229 I

a score=-29840.000000
s ce10.chrX             4388846 187 + 17718866 ------AAGAAGGGAAATCAGAAAAATTAATTCAAAAGCTATGCAACAATCAAACAATTTCAAAAAAGCATGAGA---TATAAT-GTGCGAGAGAG------GAGTAGAGAA--------AGAGAGA------------------ACGAGACAGAGACAC-----------CCAAAGAAATACAAGCGGGAAGCGGTGTCGCGTCAGAGAGACGAGGCA--------AGAGGTACCC------GCCG-----TCTGCCC
s cb4.chrX              9683698 204 + 21540570 ------AAAAACGACGACAACgaatttaatttgaaaaatcac--------aaaactctTTTAAACACAATTGCAA---CATTTTAACGAGCTAACG------CATAGCAAAACGG----GAGGGCGA------------------GCGAGACACAACGTAAAACGAAGAGACACCAGAAACAAGAAATGAGAGA----------CGCAGCGAGGAAGAGAGAACCGTGCGGGAGGCCTTGTCGACCGGGACGACTCACC
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0  1344469 177 -  4500979 ------AATCTTCGCAATCAGAAAGTGATAATTAAACATTTCTAGT---TCAAACTCTATCAAATGCAA-TGCAA---CATAAAAACGAGATAAAG------CACTACacaa--------agagaaa------------------acgagacaCAAC-TAGCGCg------caagagaaatagagaaaga-agG----------CATAGCGATGAAATGA-------GCGGATAGCCCCGAGGGCCG------------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    93225 181 +   386604 ------aacaaaaataatttgaaatttcaatttagaaatt---------------tgtatcaaatgaatttgaaactgCATCAAAATGAGATAAAA------CACTGGAAAACGA--CGgagagaggcaagcg------------acgagagacgaccccat---------caggagaaatagagaaagggaga----------cagagagaaaatgtg--------GGGGGTAGCC----AGGCCG-----ACTCA-C
i caeSp111.Scaffold622  C 0 I 25
s caePb3.Scfld02_0      2625826 193 +  4147112 ------aaaaactgtattCTGATATTCgagttttgaaactcttcCG----AAAACTCTGTGCAATAAA-TTGCAACTACGTACAAACGAGATAAAA------Cataagaaaacga-----agagagaagagagatttttggatgcacgcaaggccagc----------------gagaaatagagaaagaagga----------gagaggGGAAATGTG--------GAGGGTGGCC-----GACTG-----ACGCACC
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17084   72000 152 +   375229 aaggagaagaagaagaaaaaaaaatttaacttgCAACACG---------------------AAATATATTTACAA----------ACgagataaagagaagctacgagagatagaagagcagagaag------------------gcgagagatg----------------cagaaagaacaagagagtcgaggggtg------cagagagaT--------------TTGTCTAGCA----------------------
i caeJap4.Scaffold17084 T 33957 C 0

a score=0.000000
s ce10.chrX             4389033 20 + 17718866 GTCTATGTCGTCTCTTCTCA
e caePb3.Scfld02_0      2626019 33 +  4147112 I
e caeJap4.Scaffold17084   72152  0 +   375229 C
e cb4.chrX              9683902 34 + 21540570 I
e caeSp111.Scaffold622    93406 25 +   386604 I
e caeRem4.Crem_Contig0  1344646  5 -  4500979 I

a score=55434.000000
s ce10.chrX             4389053 256 + 17718866 CTCTCTGCTCTCTCTGCACTCTCTTCGTCTATCCACAAACATATGACGAA---------------ACAACCC----CCGGCGAATGAAGGATGAGGAGG------ACTGCGACGCGACCGCACCGC--GCGACTCTTTTGAA--GGGCGCTCTATCGGACCAGTTTTGGTCC------GTCGATTTTGCTGAACTTGGTCAA--------CTAAAGGAAACCGATTGGTTTTTTGTCTTGTT-----------TTTTTCTTTGGTTTTC-----ATTGCATTTTTC---ACATTT-------TCTAACATTTTTTCT---GTTGAAAA
s cb4.chrX              9683936 289 + 21540570 CGCTCGTTTCTCTCGCCACCCTCACACTCTCTACGCAAACATATGACGAA---------------ATGCCTCTCTTTCTGTGCGAGAAGGGCGAGGATGAGGCATgacgcgacgcgaccgcaacgcgaGCGACGGTTTTGAA--GGGCGCTCTATCGGACCAGTTTTGGCCCTCCCTTATCGACTTTGGTGAACTTGGTCGGCAGGAGGCCAAATGG---CCAAACGGAACACTCTACTGTT-----------TGTTACCTCCTCCTTT-----TTTACCTTATTCTCTTCGTACTAACCGTTGCATCGTATTTTTC---GTCTTGGA
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0  1344651 248 -  4500979 --ctctcttttctctgcggCCTCCCTGTCTCTACGTAAACATATGACGAA---------------ACAGC------GCAGTGAATGAAGGATGAGGATG------GCTGCGACGCGACCGCACCGCACGCGAGTGTATTGAA--GGGCGCTCTATCGGACCAGTTTTGGTTC------GTCGACTTTGGTGAACTTGGTCGG--------TCATCGG---ACAAACGGAACACtctttgttt-----------tgctacctatttcttt-----tttgttttcttc----------------taaatccattttttcgctgtctttcC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    93431 255 +   386604 TTGTCTGACTTCTCGGATATCTCTCAATCTCTCAGTAAACATATGACGAA---------------AGAGC------GCAACGAATGAAGGATGAGGAGG------ACTGCGACGCGACCGCAACGCACGCGTCTGTTTTGAA--GAGCGCTCTATTGGACCAGTTTTGGTCC------GTCGCCTTTGATGAACTT-GGCCA--------CCCCCCG---TCGA-----------CCCTTTCACGGT------TACTCGCCTTATTTTTCAacgttt-cttctttc-ttttgcct-------cgctatcttttttttcattatcttct
i caeSp111.Scaffold622  I 25 C 0
s caePb3.Scfld02_0      2626052 285 +  4147112 TCCTCTGGCCTGTC-TccgtctcttctctttttggtaAACATATGACGAAAGAGGTCGAGGGGAGAGAGC------gcgaagaaagaagagatggCCAG------ACtgcgacgcgaccgcaacgcatTCAAC-GATTTGAA--GGGCGCTCTATTGGACCAGTTTTGGTCC------ATCGACTTTGATGAACTTGGGTGG--------TCATCTG---GCGAACAATGTACACTCTTTTTACGATGCTACCTGTTCTCGATTGTTTCTAACATTCACTTATTTC---TCGTAT-------TATGGTTTTTTAACCCACGTTTATCG
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17084   72152 216 +   375229 ----------TCTCTAATCTCTCTCAATCTCTC--CAAACATATGACGAA---------------ACAGC------GCGGCGAATGAAGAATGAGGTAG------ACTGCGACGCGACCGCAACGCACCCCA--AATTGGAAGGGGGCGCTTTAGCGGACTAGTTTT-----------GTTGAT--------ACGTGCGTAA--------ATAAATA---CTAAA----------------------------TTTggcttttgctttt-----ttttcttacctcACCACACCT-------CACCGCCAAAACCTTCACTGGAAAC-
i caeJap4.Scaffold17084 C 0 n 0

a score=28834.000000
s ce10.chrX             4389309 231 + 17718866 GAGTGATTATCTCATTAAAATACATTTCAGCAAACTCGGGGATGATTGGTGGATTGTTCGTTTACAATCACAAAGGAGAAGTGCTCATTTCGAGAATCTATCGAGACGATGTAACGTAAGTA---ATTTTTTAT----------------ATATGGCATGTTTGGAAA-TGTTCAAAAATGTTT--------------------AAAAGAAAAAGT-------------------------------------------------------------------GGTGCGCTGAAACAGGGAAATAAAGAAATGAAA---AAATGTTTGCCG-----------CGCTGTTTTT--------------
s cb4.chrX              9684225 169 + 21540570 AAACAGTCACT-----------TTTTTCAGC-AACTC-GGGATGATTGGCGGATTGTTTGTGTACAATCACAAAGGAGAAGTGCTCATCTCAAGAATCTATCGCGACGATGTCACGTAAGTATTGATTTGTTGC-----------------------------AGCAG-CG---AGTAACAT---------------------------AGAATAC-----------------------------------------------------------------------------------------------AAGCGCAGCGatgttt---------------ttctgctttt--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1344899 220 -  4500979 GACCATTTATC-------AATATATTTCAGC-AACTC-GGGATGATTGGCGGATTGTTTGTGTATAATCACAAAGGAGAAGTGCTCATCTCGAGAATTTATCGCGATGATGTTACGTaagtattgattttttgc-----------------ttcttca-----ggaaa-ag---aaagacatttcacatcaaaaagg-------gggaaagaaaac-------------------------------------------------------------------------------attggacgggaagagaaagaataagaaTGTTTGCAG-----------CGCTGTTTTT--------------
i caeRem4.Crem_Contig0  C 0 I 96
s caeSp111.Scaffold622    93686 225 +   386604 AATTAACAAAC---------CTTTTTTCAGC-AACTCGGGGATGATTGGCGGTTTATTTGTGTACAATCACAAAGGAGAAGTGCTCATTTCAAGAATTTACCGAGATGATGTGACGTGAGttttaaatttct------------------atttGGCA-----GGAATAGA---AGTAATAGTT--------------------GAGTCAACAacc-------------------------------------------------------------------------------------aaaagagaaatgaaatggaagtGTTTGCATCGATgttttcccgattttttgatttgtttgcTATC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2626337 328 +  4147112 AATTACTAacctc-----gtttttttccagc-aactCGGGGATGATTGGCGGATTGTTCGTGTATAACCACAAAGGAGAAGTGTTGATCTCGAGAATATATCGGGACGATGTGACGTGAGTTTCtaacgtttgaaaaatatgaatgaggaatctgaaa-----agaat-ga---ataaatgtttCGAATTGTAAACAAgcgaaagaataaaaaaccgTATGCTACCACACACAATTTTGATAGCGGTAGGGATTGTTATGAAATGCGTTTTCCTCTTCCATACGGAACAC----acaaggaaaaagagagagaaaagagaaaag------------------caaaattttgatatg-CCGCTAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   72368   0 +   375229 I

a score=-22413.000000
s ce10.chrX             4389540  75 + 17718866 ----------------------GCCGAGAC------------------------TGTTTGTTCACAAACTTTTCTATGTAAAAATGTTTA-----------------TTGAAA--------------------GAAATGAG-----------------AAAAATGCGATGGTG----------------------------TA
s cb4.chrX              9684394 107 + 21540570 ----------------------aaAGTGGT------------------------TATTTGTGATCAAAC--------ATAACACTATT------------GATGCGCTGGaagataaaaat------------aaaatac------------------agCAAAGGGGTGACAACAGCGCTCGTAACTAATAAAGATCACTTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    93911  88 +   386604 AATaac-------attcattttattgttgt------------------------tttctATCGCAAAAC--------GGAGAAA-----------------------TCGATAA--AATCTCTTACATGCACAGAAGTGA------------------AGGAAAgaaacg---------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2626665 173 +  4147112 GCTGACTATTTCAAATCA-CTCACTCTTGTGAATGGGGCTAGGAGATGAAGCACTATCTGGTGAGAATC--------ACAGGAATACTTTATGTTACTAAGCTCTGCTTGAAGATCAATGTTTCCCTTTTCCGAAAATGAATATGGCTATATTCAACCAGAAAAGAGATGACA--AACACT-------------------TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084   72368   0 +   375229 I
e caeRem4.Crem_Contig0  1345119  96 -  4500979 I

a score=6.000000
s ce10.chrX             4389615 18 + 17718866 CACAAGACCCAAACAAGA
s cb4.chrX              9684501 18 + 21540570 CAAATAgccaaaaacagg
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold622    93999  6 +   386604 ------------gaaaga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2626838 18 +  4147112 CACAGCGTCCTAGAAAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  304882 18 -   375229 CACCGAAATCaaggaaat
i caeJap4.Scaffold17084 I 3175 C 0
e caeRem4.Crem_Contig0  1345119 96 -  4500979 I

a score=343929.000000
s ce10.chrX             4389633 436 + 17718866 AGAAATCATATT-TTCACGTTTCACTAG--------TTTCAGCCGGAACGCAGTCGACGCCTTCCGAGTCAACGTCATCCATGCCCGACAGCAAGTTCGCTCGCCAGTCACCAACATGGCTCGTACTTCGTTCTTCCATGTGAAGCGTGGCAACGTCTGGATTTGTGCGGTGACACGTCAAAATGTCAACGCTGCCATGGTTTTTGAGGTAGCGACGGGGAAAAGTATT-AGGGACA-CA-----CTTAAA--TTACGAA-TTTCAGTTCTTGAAACGCTTCGCCGACACCATGCAGTCTTACTTTGGAAAACTGAACGAGGAGAATGTGAAGAACAACTTTGTGTTGATTTATGAGTTGCTCGAC-------------------------------------------GAGATTCTCGACTTTGGATACCCCCAGAATACGGACCCTGGTGTGCTGAAAACTTTCATCACCCAGCAAGGAGTCAGAACAGCTGTAAG
s cb4.chrX              9684521 431 + 21540570 aaaacaaacatt-------taatccaat--------tttcagccgaaacgCCGTGGACGCTTTCCGAGTCAATGTCATCCATGCTCGGCAGCAAGTTCGGTCGCCAGTTACGAATATGGCTCGCACCTCGTTCTTCCATGTAAAGCGCGGAAATGTGTGGATTTGTGCGGTGACTCGTCAAAACGTCAACGCTGCTATGGTTTTCGAGGTAACCAATA-----GTTGCAGCGAGTCaaca----tctcaaaatttttgaattttcagtttctgaagCGCTTCGCCGACACGATGCAATCGTATTTTGGAAAGTTGAATGAAGAGAACGTGAAGAACAACTTTGTGCTCATTTATGAGCTCCTCGAT-------------------------------------------GAGATTCTCGATTTTGGATATCCACAGAACACGGATCCAGGAGTCCTCAAAACGTTCATCACTCAACAAGGAGTTCGCACTGCTGTGAG
i cb4.chrX              I 2 I 208
s caeRem4.Crem_Contig0  1345215 427 -  4500979 ACAACTCACAT----------ACTCCGG--------TTTCAGACGCAATGCTGTCGACGCTTTCCGAGTCAATGTCATCCACGCTCGACAACAAGTCCGATCGCCAGTCACCAACATGGCCCGCACTTCGTTTTTCCATGTGAAGCGGGGAAATGTCTGGATTTGTGCGGTGACTCGTCAAAATGTCAATGCTGCTATGGTTTTCGAGGTAACCATTG---ACATTGTA-CGGAACAAAA-----CTAAAACATGAcgaa-tttcagtttctcaagCGATTCGCCGACACAATGCAATCGTATTTTGGAAAGTTGAACGAGGAGAACGTGAAGAACAACTTTGTGCTCATCTACGAACTTCTAGAT-------------------------------------------GAGATTTTAGACTTTGGATATCCGCAAAACACGGATCCAGGAGTTCTCAAGACTTTCATCACTCAACAAGGAGTTCGTACTGCTGTAAG
i caeRem4.Crem_Contig0  I 96 C 0
s caeSp111.Scaffold622    94005 420 +   386604 aaaacgaataat------------------------tttcaggaGAAACGCTGTCGATGCATTCCGAGTCAATGTCATCCATGCTCGGCAACAAGTCCGGTCGCCAGTTACAAACATGGCTCGCACTTCATTCTTCCATGTCAAACGTGGCAACGTCTGGATTTGTGCGGTGACTCGTCAAAACGTCAACGCTGCTATGGTTTTCGAGGTAACCAAGG---ATGCGACC-CGAAACATCT----TCTAAAA--TGacgaa-tttcagtttttgaaacgattCGCCGACACGATGCAATCGTATTTTGGAAAGTTGAACGAGGAAAACGTGAAGAACAACTTTGTGCTTATCTACGAACTTCTCGAC-------------------------------------------GAGATTCTGGATTTCGGATACCCACAGAACACGGATCCGGGAGTTCTCAAGACATTCATCACTCAACAAGGAGTCCGTACTGCGGTTAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2626856 445 +  4147112 AAACTGAAAAGTGTATAGCTGACACAAACAAGCTTCTTTCAGGAGAAATGCTGTCGACGCCTTTCGAGTCAATGTCATCCATGCCCGGCAACAAGTGCGATCCCCAGTTACCAACATGGCCCGCACCTCGTTTTTTCATGTCAAGCGCGGCAACGTCTGGATTTGTGCGGTGACTCGTCAAAATGTCAACGCTGCCATGGTTTTTGAGGTAGAGCGGG---ATG---TC-TGAAGTGGCTGGGGTCTAAAA--TAACAAA-TTTCAGTTCTTGAAACGGTTCGCCGACACCATGCAATCGTACTTTGGGAAGTTGAACGAGGAGAACGTGAAGAACAACTTCGTACTCATTTACGAGCTTCTCGAC-------------------------------------------GAGATTCTAGACTTTGGATATCCGCAAAACACCGATCCAGGAGTTCTGAAGACTTTCATCACTCAACAAGGAGTCCGCACTGCTGTGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  304900 421 -   375229 aaaaataataa----------atgcaAT--------TTACAGACGAAATGCAGTAGACGCCTTCCGCGTGAACGTCATCCATGCTCGACAACAAGTCCGCTCACCGGTCACCAATATGGCACGCACATcgttttttcacgtaaaacgTGGAAATGTGTGGATTTGTGCAGTTACTCGACAAAATGTGAATGCCGCGAtggtttt----------------------------------------------------cgaa-------tttttaaaacggtTTGCTGACACGATGCAGTCTTACTTTGGTAAATTAAACGAGGAAAATGTGAAGAACAATTTTGTGCTCATTTATGAGTTACTGGATGGTCAGTTGCACTGTTCATTTTTAGAtatcaggttttttttcagaaattcttgATTTTGGATATCCACAAAACACGGATCCTGGCGTTTTGAAGACCTTCATCACGCAGCAAGGCGTTCGAACTGCGGTAtg
i caeJap4.Scaffold17084 C 0 C 0

a score=-1323.000000
s ce10.chrX             4390069 5 + 17718866 GAATT--
s caeRem4.Crem_Contig0  1345642 5 -  4500979 TACTT--
i caeRem4.Crem_Contig0  C 0 I 233
s caeSp111.Scaffold622    94425 5 +   386604 TGTTT--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627301 5 +  4147112 TGATC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  305321 5 -   375229 --ctttt
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9684952 208 + 21540570 I

a score=546.000000
s ce10.chrX             4390074 1 + 17718866 T
s caeSp111.Scaffold622    94430 1 +   386604 T
i caeSp111.Scaffold622  C 0 I 113
s caePb3.Scfld02_0      2627306 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 141
s caeJap4.Scaffold17084  305326 1 -   375229 t
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9684952 208 + 21540570 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=392.000000
s ce10.chrX             4390075 8 + 17718866 ACAATTTT
s caeJap4.Scaffold17084  305327 8 -   375229 attatttt
i caeJap4.Scaffold17084 C 0 I 57
e caePb3.Scfld02_0      2627307 141 +  4147112 I
e cb4.chrX              9684952 208 + 21540570 I
e caeSp111.Scaffold622    94431 113 +   386604 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=0.000000
s ce10.chrX             4390083 693 + 17718866  
e caePb3.Scfld02_0      2627307 141 +  4147112 I
e caeJap4.Scaffold17084  305335  57 -   375229 I
e cb4.chrX              9684952 208 + 21540570 I
e caeSp111.Scaffold622    94431 113 +   386604 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=160.000000
s ce10.chrX             4390776 3 + 17718866 GCT
s caeSp111.Scaffold622    94544 3 +   386604 GTT
i caeSp111.Scaffold622  I 113 C 0
e caePb3.Scfld02_0      2627307 141 +  4147112 I
e caeJap4.Scaffold17084  305335 57 -   375229 I
e cb4.chrX              9684952 208 + 21540570 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=710.000000
s ce10.chrX             4390779 8 + 17718866 CTTTATTC
s caeSp111.Scaffold622    94547 8 +   386604 ATTAACAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627448 8 +  4147112 CTTTATAC
i caePb3.Scfld02_0      I 141 C 0
e caeJap4.Scaffold17084  305335 57 -   375229 I
e cb4.chrX              9684952 208 + 21540570 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=-2213.000000
s ce10.chrX             4390787 9 + 17718866 ACGAAC-CCT
s cb4.chrX              9685160 9 + 21540570 ATGAGG-CTA
i cb4.chrX              I 208 C 0
s caeSp111.Scaffold622    94555 7 +   386604 ---Aagtatc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627456 6 +  4147112 ---ATa-aca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  305335 57 -   375229 I
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=38.000000
s ce10.chrX             4390796 3 + 17718866 TTT-
s cb4.chrX              9685169 3 + 21540570 TCT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    94562 3 +   386604 ttt-
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0      2627462 3 +  4147112 ttt-
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17084  305392 3 -   375229 -TTG
i caeJap4.Scaffold17084 I 57 C 0
e caeRem4.Crem_Contig0  1345647 233 -  4500979 I

a score=43766.000000
s ce10.chrX             4390799 52 + 17718866 TTTATAGGATGCTCCTGTCCCAGTGGTAAGTTTTCATATGTATATATTGTGA
s cb4.chrX              9685172 44 + 21540570 TTTGTAGGATGCTCCGGTTCCTGTGGTAAGTTTT--------AATATTGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1345880 44 -  4500979 TTTGTAGGATGCTCCGGTTCCAGTCGTAAGTTTT--------TATATTGTGA
i caeRem4.Crem_Contig0  I 233 C 0
s caeSp111.Scaffold622    94571 44 +   386604 attatagGATGCTCCGGTACCTGTGGTAAGTTTC--------AATATTGTGT
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2627471 44 +  4147112 attatAGGATGCTCCGGTTCCTGTGGTAAGTTTT--------GATATTGTGA
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17084  305395 44 -   375229 TTTATAGGATACTCCAGTTCCTGTGGTAAGTTTA--------AGTATTGTGA
i caeJap4.Scaffold17084 C 0 I 110

a score=-8900.000000
s ce10.chrX             4390851 156 + 17718866 CCAAC-TGTGTT-TTGTGTGCACG-GAA-TCAT------------TTTTTAC-TTGTGTCTCTTATTTTATTGT-CA--------GAAA-----------------ATCAAAAAGATTTGCTATCTTTTCAGATTGTAG----------------CAAAAATCTAGATAA----CCATT-----------C-------------------------ATATT-TT---GTCTCAG-----GAGAATA------------CATAGAATAATAGACGTT
s cb4.chrX              9685216 202 + 21540570 ATGGATTGTGTCGTTGTGTGCACGAGAA-ATGATTCTTATTCTCTTTATTAGTTTCCGTCTTGTTGATCCCTTT-TCCTTGTCTCGACG------CCGCG------GACTGAAAATAATGCCGT---TATTGGAAAAAGAAAC------------CCAATATCGGAAGGGTGCaatctt-----------c-------------------------atatt-ttttagttCCAA------GTAAAATGTTCAATTCCTCAAGGGATTTATATTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1345924 230 -  4500979 ATGAA-TGTGTC---GTGTGCACGAAAA-CTGA------------TTATTAG-TTCCGTCTTGTCTATTTCCTT-CAGCTAT---GAAGCAAGAACTGTGTTTTGAGACTGAAAATAGTGTGATTCATACAGGAAATTATGTT------------CGAGCGACTGAGGGATATACTCGC-----------CGTCTCTTTATATATATCTATATCCGATATC-TTTTACTTTCAAACCGCGATAACATTGTTTTCTCCCTAGAGGATTAGTTCTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    94615 216 +   386604 CTGAA-TATGTC---GTGTGCACGAGAA-ATGA------------TTATGAG-TTTTGTATTGTTTTACCTTTCTAGCAAGT---GAA------------------TACAGAATTCAGTGTGACTCAAACAGAATGTCATCATCAAAATGCCATATGAAAATCTGGCTGATGCTTCTTC-----------C---------TTCCTATCTACGTCCGatatc-tttcattttcaaatgactATGATATTGTTATTTCTCCAGGgacttattttcttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627515 234 +  4147112 ATGGA-TGTGTC---GTGTGCACGAAAAGATGA------------TTATTAG-TTGCGTCTTGTTATTTCCTTC-AGCGAGT---AAAA--------ATGTCATggcaaaaaaaacagtgtgaTTCATGCAGGAAGTTATTATATCGTTTCTGT-TGAGACTCCAACCAAAAGATTTTCGGTTGCGCGTGC---------TTCCTATCTATATCCGatatctttttattttcaaat---catcacattgttttttcccgaggggatttattttgtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  305439 110 -   375229 I

a score=166760.000000
s ce10.chrX             4391007 145 + 17718866 TTGCAGACCAAAGAGGAGCAGTCACAAATCACGTCTCAAGTGACTGGCCAAATTGGATGGCGTCGGGAGGGTATTAAGTACCGCCGAAATGAGCTCTTCCTGGATGTTATTGAATATGTCAACTTGCTCATGAATCAACAAGGTA
s cb4.chrX              9685418 145 + 21540570 TTGCAGACCAAAGAGGAGCAGTCGCAGATCACATCTCAAGTGACCGGACAAATCGGATGGCGTCGTGAAGGTATCAAATACCGACGTAATGAGCTTTTCCTGGATGTCATCGAATATGTGAACCTGCTCATGAATCAGCAAGGTA
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0  1346154 143 -  4500979 TTTCAGACCAAAGAGGAGCAGTCTCAAATCACGTCTCAAGTCACTGGACAAATTGGATGGCGTCGAGAGGGTATTAAATACCGCCGAAATGAGCTTTTCTTGGATGTCATCGAATATGTCAACTTGCTTATGAACCAACAAGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    94831 145 +   386604 ttgcagaCCAAGGAAGAGCAATCGCAAATCACTTCCCAAGTGACTGGACAAATTGGATGGCGTCGTGAGGGTATCAAGTATCGCCGCAATGAGCTCTTCCTGGATGTCATTGAGTATGTCAACTTGCTTATGAATCAACAAGGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627749 145 +  4147112 ttgcagACCAAAGAGGAGCAGTCTCAAATCACTTCTCAAGTGACTGGACAAATTGGATGGCGTCGTGAGGGTATTAAGTACCGCCGGAATGAGCTTTTCCTGGATGTCATCGAATATGTCAACTTGCTCATGAACCAACAAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  305549 145 -   375229 TTGCAGACGAAAGAGGAGCAGTCACAAATCACATCCCAAGTGACCGGGCAGATTGGATGGCGTCGTGAGGGCATCAAGTATCGAAGAAATGAGCTCTTCCTGGATGTCATTGAATATGTTAATCTGCTCATGAACCAGCAAGGTA
i caeJap4.Scaffold17084 I 110 I 953

a score=-2141.000000
s ce10.chrX             4391152 28 + 17718866 C--ACACAATAACGACGTGCATACTTTTAT
s caeSp111.Scaffold622    94976 30 +   386604 ACGATACAAATAGACAGTGGTCCATGTTAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2627894 29 +  4147112 A-AACTCGCATCAGAGTTGGATTAAGTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  305694 953 -   375229 I
e cb4.chrX              9685563 24 + 21540570 I
e caeRem4.Crem_Contig0  1346297  0 -  4500979 C

a score=91.000000
s ce10.chrX             4391180 1 + 17718866 A
s cb4.chrX              9685587 1 + 21540570 a
i cb4.chrX              I 24 C 0
e caePb3.Scfld02_0      2627923 0 +  4147112 C
e caeJap4.Scaffold17084  305694 953 -   375229 I
e caeSp111.Scaffold622    95006 0 +   386604 C
e caeRem4.Crem_Contig0  1346297 0 -  4500979 C

a score=159672.000000
s ce10.chrX             4391181 166 + 17718866 TCGAATAT--AATTTTTAAGGACAAGTATTATCTGCTCATGTTGCCGGAAAAGTTGCGATGAAATCCTATTTGAGTGGAATGCCGGAGTGCAAATTTGGCATCAACGACAAAATTACCATCGAAGGAAAGTCGAAGCCAGGAAGTGATGATCCAAACAAAGCGTTAGT--
s cb4.chrX              9685588 168 + 21540570 tcaaattttcaagttttcaggaCAAGTCCTCTCCGCTCACGTTGCCGGTAAAGTTGCCATGAAGTCGTACTTGAGTGGAATGCCTGAGTGCAAGTTTGGCATCAACGATAAGATCACGATTGAAGGAAAGTCCAAACCAGGAAGCGATGATCCGAACAAAGCGTAAGT--
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1346297 147 -  4500979 ---------------------GCAGGTGCTTTCTGCTCATGTCGCTGGAAAGGTTGCCATGAAATCTTATCTGAGTGGAATGCCGGAATGCAAGTTTGGAATCAACGACAAGATCACCATCGAAGGAAAATCAAAGCCAGGAAGTGACGATCCAAACAAAGCGTTAGT--
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold622    95006 163 +   386604 -----TAATCGTTTTTTCAGGACAAGTTCTCTCTGCTCATGTCGCCGGAAAGGTTGCCATGAAGTCGTATTTGAGTGGAATGCCGGAATGCAAGTTTGGAATCAATGACAAGATCACCATCGAAGGAAAATCGAAGCCAGGAAGTGACGATCCAAACAAAGCGTTAGT--
i caeSp111.Scaffold622  C 0 I 22
s caePb3.Scfld02_0      2627923 164 +  4147112 ----ACATTCTAATTTTCAGGACAAGTTCTATCCGCCCATGTTGCTGGAAAGGTCGCCATGAAATCTTATTTGAGTGGAATGCCGGAATGCAAGTTTGGAATCAATGACAAGATCACCATTGAAGGAAAGTCCAAGCCAGGAAGTGACGATCCAAACAAAGCGTTAGT--
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17084  306647 170 -   375229 tcgaaattatttttttccaggacAAGTTCTCTCCGCCCATGTTGCCGGAAAGGTGGCCATGAAGTCGTACCTCAGCGGAATGCCAGAGTGCAAGTTTGGAATCAACGACAAGATCACGATTGAGGGAAAATCCAAACCGGGAAGCGACGACCCGAATAAAGCGTAAGGCT
i caeJap4.Scaffold17084 I 953 C 0

a score=-6117.000000
s ce10.chrX             4391347 18 + 17718866 ------CTGAGTTTCCGGGATAGG----------
s cb4.chrX              9685776  6 + 21540570 ------CTGAGT----------------------
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1346460  6 -  4500979 ------CCTAGT----------------------
i caeRem4.Crem_Contig0  I 16 C 0
s caePb3.Scfld02_0      2628103  3 +  4147112 ---------TGT----------------------
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17084  306817 22 -   375229 CTGCAACTATGT------------AATCCGCTTG
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622    95169 22 +   386604 I

a score=396832.000000
s ce10.chrX             4391365 488 + 17718866 GAAACTGATACTTTATTGTTTGCAGAAGCCGTGCCGCAGTGGCCATTGATGACTGTCAATTCCACCAATGCGTGAAGCTGACGAAATTTGAGACGGAGCACGCGATTTCTTTTATCCCACCGGACGGCGAGTACGAGCTGATGAGGTACACTTT-TTGTTGTACAATT---TTCGTAGTGTTATTACT--TTTTGCAGATACCGTACCACTAAGGATATCCAACTGCCATTCCGTGTGATCCCATTGGTTCGTGAAGTGTCTCGTAACAAGATGGAAGTTAAGGTATTTCACTTGTCACTTCAAATATTTACCAATCATGGCTC----TCAT----TT--TCAGGTTGTCGTCAAGTCTAACTTCAAGCCATCCCTTCTTGCTCAAAAGCTCGAAGTTCGCATTCCAACCCCACCAAATACATCCGGCGTTCAACTTATTTGCATGAAGGGAAAAGCCAAGTACAAGGCAGGCGAGAATGCCATTGTGTGGAAGTGAGTGGGGG
s cb4.chrX              9685782 476 + 21540570 GTAATGGATATT----TATTTGCAGAAGCCGTGCCGCTGTGGCCATTGATGACTGTCAATTCCACCAATGCGTGAAGCTCACGAAATTTGAGACGGAGCACGCGATCTCGTTTATTCCACCCGACGGCGAGTACGAgttgatgaggtatgaa---tggTTTCATGGATCCTAGATCAACAACAACCGT--TATTTTAGATACCGCACAACCAAGGATATCCAACTCCCATTCCGTGTCATCCCATTGGTTCGTGAGGTGTCCCGCAACAAGATGGAAGTCAAAGTAGCCC----CATTCTACTTCTACACTTTCTATAAAGTGA----CGAC----TT--TCAGGTTGTCGTCAAGTCCAACTTCAAGCCATCacttttggctcaaaaaattgaagttcgcATCCCAACACCACCGAACACATCCGGCGTTCAGCTGATTTGCATGAAGGGAAAAGCCAAGTACAAGGCTGGCGAGAATGCCATTGTGTGGAAGTGAGT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1346466 482 -  4500979 GAAACTAATACTCTTGTATTTGCAGAAGCCGTGCCGCCGTGGCTATCGATGACTGTCAATTCCACCAATGCGTGAAGCTCACGAAATTTGAGACCGAGCACGCGATTTCCTTTATCCCACCGGACGGCGAGTACGAGTTGATGAGGTATGAT---TTGTTTTCAGGGTAC-AGTCTAAGGaaagtcat--gttttcagataccGCACCACCAAGGATATCCAACTTCCATTCCGTGTCATACCATTGGTTCGTGAAGTTTCTCGTAACAAGATGGAAGTCAAGGTACGTC----TATACT-CATGTACATTTTAGTAAACATAAATCTCTGT----TT--TCAGGTTGTCGTCAAGTCCAACTTTAAACCATCATTGCTcgctcaaaaaattgaagttcgCATCCCAACGCCACCAAACACATCCGGCGTTCAGCTCATTTGCATGAAGGGAAAAGCCAAATACAAGGCTGGCGAGAATGCCATTGTGTGGAAGTGAGT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    95191 474 +   386604 GAAACTGATACCTTCTTGTTTGCAGAAGCCGTGCCGCTGTGGCTATTGATGACTGTCAATTCCACCAATGCGTGAAGCTCACGAAATTTGAAACCGAGCACGCGATTTCCTTTATCCCACCGGACGGCGAGTACGAATTGATGAGgtaaaaaa--tgatcagaaaga----aaagggaaattaatcat--attttcagatatcgCACGACTAAGGATATTCAATTGCCATTCCGTGTTATCCCGTTGGTCCGTGAAGTCTCTCGTAACAAGATGGAAGTTAAGGTAA-------GACCCTG--TATATCCGTTCTTCCAAGCAA----CCCCTCAATT--CTAGGTTGTTGTCAAATCCAACTTCAAGCCGTCACTTCTtgctcaaaaaatcgaagttCGCATTCCAACCCCTCCGAACACTTCCGGCGTCCAACTTATTTGCATGAAAGGAAAAGCCAAGTACAAGGCTGGCGAGAATGCCATTGTGTGGAAGTGA-------
i caeSp111.Scaffold622  I 22 C 0
s caePb3.Scfld02_0      2628106 478 +  4147112 GAAACCGATACCCTCTTGTTTGCAGAAGCCGTGCCGCCGTGGCTATTGATGACTGTCAATTCCACCAATGCGTGAAGCTCACGAAATTTGAGACCGAGCACGCGATTTCTTTCATCCCACCGGATGGCGAGTACGAGTTGATGAGGTACAGCATTTTGTTTGAGAGG----AACGTATCA-TAATGATGAGCTTTCAGATACCGCACCACCAAAGACATCCAACTGCCATTCCGTGTTATCCCATTGGTTCGAGAAGTTTCCCGTAACAAGATGGAAGTCAAGGTACCCCAA-TTATTCTGCCTACATTCTCCCTTC---ACAA----TTTC----TT--TTAGGTTGTCGTCAAGTCCAACTTCAAGCCGTCACttcttgctcaaaaaattgaagtccGCATCCCAACGCCTCCGAACACTTCCGGCGTGCAACTTATTTGCATGAAAGGAAAAGCCAAGTACAAGGCTGGCGAGAATGCCATTGTGTGGAAGTGA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  306839 433 -   375229 AAAACTGATACC------CTTGCAGAAATCGTGCCGCCGTGGCTATTGACGACTGTCAATTCCACCAATGCGTGAAGCTTACGAAATTTGAAACCGAGCACGCAATCTCGTTTATCCCACCGGATGGTGAGTATGAGCTGATGAGGTA---------------------------------------T--------------CGCACCACCAAGGACATTCAACTTCCGTTCCGAGTCATTCCGTTGGTTAGGGAAGTTTCGAGGAATAAGATGGAAGTTAAGGTATGTA----CATATAGTTTGGGTGTTTGGATTGTCATTT----TTAT----TCCGTTAGGTGGTTGTCAAGTCCAACTTCAAGCCGTCTCTTCTTGCTCAAAAGATTGAGGTGCGCATTCCAACGCCACCAAACACGTCGGGTGTGCAATTGATTTGTATGAAAGGAAAAGCCAAGTACAAGGCGGGCGAGAATGCGATTGTGTGGAAGTAAGTGAGGG
i caeJap4.Scaffold17084 C 0 I 137

a score=6181.000000
s ce10.chrX             4391853 206 + 17718866 CGTGT-GCCCGGTGCTCATACA---------------CTG----------ACTGAG--------------------------CATAGGATTAAAACGAAGCGGCAGAG----AGAAAAAGGAGAAGGGGGGGGGGGGCT---CCA--TTTTGGGC---------------------AAGAATAAGAAAA------CGAGAAAAGTGGGAGGGGAGGG-----------GGCGCTAAGAAAATTGGGCAGAAGCATTACACACTTTGAGCTGTACAACTAAAAAAGAAAGAAACTGCAATCAGAGA
s cb4.chrX              9686258 240 + 21540570 TGTCTATCCGGGAGAGACAGGG--------------TCTCGTTTTTGGGGCCCATGCACACAGTCTTCTCACATACA-----CATAGGATTAAAGCGAGAGTTGGGAGGGATGATGAAACGCAAA--GAAAAGAAACCCGCACAA--TTTTGGGG-------------TGTCtaaggaagagaagaaaaccGATGAGGGAAAAGAAAACTATGGGGTTAGAGGGTGAAGGCGT----GAAGCTGTACAT-----gtat--------------------gaaaagaagaaagaagatagGAAGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1346948 248 -  4500979 AGTCC-TTCGGGTGTGCCCACACTCCTCCGCtgctttctctctttt----tctctgcattccttttcctttcttaTACTCTGCATAGGATTAAACCGAAACTGCCAAG---------AAGACGGA--GAAAAGGGACCT---CCa--ttttggggggggggggggtgttgtataagaaaatggagaaaa----------agaaggcagCAAAGGGGT------ATGGAGGCGTTGAGAAAATTGTGCTCTGGCAGTAC--------------------GAAAAAGAAAGCGAAGACAATCAGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    95665 197 +   386604 -GTCC-TCTGGGTGTGCCTATA---------------CACTCTCG------CCGGG--------------------------TATAGGATTAAAACGAAACGAGCGAG----GCGAGCAGGCGAA--GAAAATGGCCCG---CCG--TTTTgggggg----------------aaaagaaagtagaaga------gaagaaaagtggggaaggggga---a----------gttgagaaaaTTGACCATGAGCAATAC----------TAGTTGA---GAAAAAGGCAGGGAAGGCAATCAGTGA
i caeSp111.Scaffold622  C 0 I 131
s caePb3.Scfld02_0      2628584 211 +  4147112 -GTCC-TTTGGGTGTGCATATA---------------CACTCTTTT----CCTCAG--------------------------CATGGGATTAAAACGAAACGCGCGA-------AAGCACGCAAA--GCAGTGGGgcct---tcaatttttggaaga----------------tagaagacgaagaaaa------tgggagaaggaggggaagaaga---aggatgtaggcgttgagaaaattttcttattgCTGTAC----------TTGTAGGggtgaaaaaaggaaggaaggcAATCAGGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  307272 137 -   375229 I

a score=-423.000000
s ce10.chrX             4392059 20 + 17718866 AATT-------GGCAGT---AGAACATTAA
s cb4.chrX              9686498 29 + 21540570 AACTCTAAGAAAGTGGCTTGAGAATTTCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1347196 20 -  4500979 AATT-------GGTGAC---AGAACTTTGA
i caeRem4.Crem_Contig0  C 0 I 191
s caePb3.Scfld02_0      2628795 19 +  4147112 AATT-------GGTGAG--AAGAACTTT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I

a score=-3132.000000
s ce10.chrX             4392079 53 + 17718866 CTAATACTATGTAGTTGTACATATTATTGCCGA-------------AAAGGGATATGGTTGGGATA----------
s cb4.chrX              9686527 56 + 21540570 ----------------GTGAACTTTTCTGCGACGCggaaaggaagaagagaaa----attgaaaaaatttagaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2628814 29 +  4147112 --------------------CTTTGCCTACTGC-------------AAAGGAA----ATTGAGATA----------
i caePb3.Scfld02_0      C 0 I 96
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=-1162.000000
s ce10.chrX             4392132 124 + 17718866 TTTACTAAAAAGGAATTTTCTGGAAATTTTTTGTGGGCTTG-------------AAATAACAAATTTGCACCTGTAACTAAAGGAAAACATTTAACTCGTCCGTAACAGTGAAACAGAAATTATTAACTTCAAGCGC
s cb4.chrX              9686583 113 + 21540570 ctagatggagacgaattt--tggaaa---attgaaaacttggatcacttctcaaaaatatcaatgacACAC--------AGGGTGAAGCAATT-GCTAG--CATGGCAGCTGAACTaaaaaaaCCA--------CTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2628843  96 +  4147112 I
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=-1730.000000
s ce10.chrX             4392256 74 + 17718866 CATTTTCAAAAATTGGTGGAATTGTATACAGGAGACAAAGTTTGAATTTTCGAGTTACAATGATTCTCAAGTCT-----
s cb4.chrX              9686696 61 + 21540570 AATTTTAGAAACTTGATTGAATTAGTTACCGCAT------------TTTTCTAGCACC-ATACATctcaaattt-----
i cb4.chrX              C 0 I 188
s caePb3.Scfld02_0      2628939 63 +  4147112 CATTTTCAAGATAAAATAATAACAGACAGCAAA---------------TGCAAGCTGC-ATGAACGTTAGAATTAGTCA
i caePb3.Scfld02_0      I 96 C 0
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=116.000000
s ce10.chrX             4392330 28 + 17718866 TTTCTGCACTT----------CTTTTCACGAGATCAAG
s caePb3.Scfld02_0      2629002 38 +  4147112 TCTCTCCCTTTGAACAATATGCATCCCACTAAATTTAG
i caePb3.Scfld02_0      C 0 I 69
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9686757 188 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=0.000000
s ce10.chrX             4392358 51 + 17718866 ATTTGTGGGCGGCTTGATCCCCTGAATTTCTTTCACACAATAGTTAACCAA
e caePb3.Scfld02_0      2629040 69 +  4147112 I
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9686757 188 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=920.000000
s ce10.chrX             4392409 52 + 17718866 GAGTTCAAATATGAGCTCACAATCAAAAA-GTGTACCAAAAAGGGACCAACAG
s caePb3.Scfld02_0      2629109 45 +  4147112 GGATTCAGA--------CAAAATCACAAATGAATACCGACAAACGTCCAACAA
i caePb3.Scfld02_0      I 69 I 160
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9686757 188 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=0.000000
s ce10.chrX             4392461 65 + 17718866 CTTCCTTAAACAAATTGATGTAATATCATATATATGTTTTGTTCACAATCTGTCGCAAATTGGCA
e caePb3.Scfld02_0      2629154 160 +  4147112 I
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9686757 188 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=530.000000
s ce10.chrX             4392526 82 + 17718866 CGAATGTTCAAA--AATAAATTTTTCATCTGACTGCTAAGCAAATGTATATTTTTGCAGTTGAAATTGTTTAAAGACTGCGATT
s cb4.chrX              9686945 66 + 21540570 AGAATGCTTATAGGAATAA---TTCCATTCGATTATTATGATAAT---TAGTTTGGAA------------CAAAGaatgagatt
i cb4.chrX              I 188 I 36
e caePb3.Scfld02_0      2629154 160 +  4147112 I
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=0.000000
s ce10.chrX             4392608 14 + 17718866 ATATTTTGGTTGTC
e caePb3.Scfld02_0      2629154 160 +  4147112 I
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9687011 36 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=1021.000000
s ce10.chrX             4392622 20 + 17718866 TTACCTTTTATCAAAAACCA
s caePb3.Scfld02_0      2629314 20 +  4147112 TTGCTTTTTATCGGAAAGCG
i caePb3.Scfld02_0      I 160 C 0
e caeJap4.Scaffold17084  307272 137 -   375229 I
e cb4.chrX              9687011 36 + 21540570 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=-11780.000000
s ce10.chrX             4392642 189 + 17718866 ----------------------------TCAA-------AATATGCAAAACT-------GTGCTGCACGTATTTTTTCAATTAAAAATTCA----AGACTTTCTGAA-------ATTAGTGAATTTTCCAAACCTTGACTGAAGCATTTC--AGAAATCT---------AATGCTTTTACTAAAGCTTTTGGAGCATTTTGTTTTCTAA--TTTTGAATGAAA----AAGTTC-TCACAGGCCTTATAA--------TGTTACCATTG--------------
s cb4.chrX              9687047 172 + 21540570 ----------------------------ttat-------aGTTTACAAGAGT-------AAGCTAAAAATATCCCATTTGACTGAGCTTCC---TAGAATGTATAAATTCATCCAATAATCAATTTTC----CCATGATCA-----------AGAAACATGTTAACAACAACTCAT------A-------GAAGCA---------CAAA----TCACATGAAACATTGATCTT-TCACACACTCTATA---------TTTACTCGTAA--------------
i cb4.chrX              I 36 C 0
s caePb3.Scfld02_0      2629334 250 +  4147112 TAAAACAGTTCTGAGCCCTCAGAGCATGTTATATGTAAAAGGTTGTGAGAACGTCTTAAACGCTGGCAACACTCAGTCGGTTTAAAGTTTCTTATGAAACGTTACAGTTCA---ATAGAGCAAACTTA----CTGCAACCGGTTTGTTTTGTAGAAATAT---------AACGCGTCGGGCAA-------GTAGCG---------CAAAAATGCAACATAAAAGTTTAAGTTTATCAAAGAATGGATAATATGTTTCTTTCTCCGTTACAAAATTTCAagta
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17084  307272 137 -   375229 I
e caeSp111.Scaffold622    95862 131 +   386604 I
e caeRem4.Crem_Contig0  1347216 191 -  4500979 I

a score=257787.000000
s ce10.chrX             4392831 462 + 17718866  
s cb4.chrX              9687219 451 + 21540570  
i cb4.chrX              C 0 I 133
s caeRem4.Crem_Contig0  1347407 520 -  4500979  
i caeRem4.Crem_Contig0  I 191 I 3
s caeSp111.Scaffold622    95993 424 +   386604  
i caeSp111.Scaffold622  I 131 C 0
s caePb3.Scfld02_0      2629588 432 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17084  307409 450 -   375229  
i caeJap4.Scaffold17084 I 137 C 0

a score=-23842.000000
s ce10.chrX             4393293 108 + 17718866 AATGTAGA-GTCATCG--CAGCATTACA-GTACTGTAAGAGTTGTTTTCAATTTATAAGAACT-ATTAGATCTT-TAGACGTCTCGATAAGCATTTTCGCATGCTT-----------------------------ATAATTCC
s caeRem4.Crem_Contig0  1347930  46 -  4500979 ---------ACTTTTG-------------AACCTTCAGTGCATG--CTTAATTAGTAAAAGT-------------------------------------------------------------------------GTAACTAA
i caeRem4.Crem_Contig0  I 3 I 22
s caeSp111.Scaffold622    96417 135 +   386604 AATGTAAGAACTTTTGTAATGTATTCTC-ATTCtctaaaaaa-----ctaatttatACTAGTTCacttgctttttttcaaacactgCTATCCTTTTTTGCATGCTTCA--ATCGTCAGAGTAAGTATCCACTGCAGTAATCAA
i caeSp111.Scaffold622  C 0 I 24
s caePb3.Scfld02_0      2630020 135 +  4147112 AATGTAAAAGTTATTGTAAATTATTAttggttttctagaaaa----ccttATTTATATTAGCT-AGTAGCTTTTATCCAATCCACCCTTACCTTTTTTGCATGCTTCACGATAATCCGAGTAAGAAACACCT---GTAACCAA
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17084  307859  79 -   375229 -gtgtgaa-aaaaatgtaatttattttt-agatTGTAG--------TTTGACcctctttaaat-------ttttttaaaactatagCTTAGAGTTTT----------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9687670 133 + 21540570 I

a score=4423.000000
s ce10.chrX             4393401 352 + 17718866 ATGCATTTTCCGTGCC------------AAAATTCAAAAACCCCCGC-CCCACCCCG------------TTCCATCTTTATTTATTGTCAGTGTAAAATTTCAAAATTTCTGGAATCTTTTTCCAT-CATAAAA--TTCACTTCAAAACGTCTTCTGAA--CCCCGTTG------GAGCAATAACATTTTTA------AAATATTTTTTTCATTTACCTTTTCT-TCATAATTCATC--------------ATAATTTATTG---------TAACGGCTTAA----------TTTGAT---------ATATTGTTCTTTCTACATTCCATTTTTTGTCTCTCTCTCAAAAATTTTCA--AATTTCTATTGTTCATTTCTCATTTCTAGGTCCG------------------CAATTCAAT----AAGTTTGTAATTCAAATGAA-TAGCataatatttattt---------
s cb4.chrX              9687803 286 + 21540570 atgcattttctgTGCC------------AAGAATCAAAACGATCCAC-TCCTCCACAAGTAGATTAGTTTTG--AGCCCGTTTCTCACCAATTCACA--------------------TTTTCTCGT-CAAAATAACTTCACTTCAAACTGTCTTA--AAATCCCCGttattttttgagcagcaatatttccc-----------taacccaaatttatttatattattataattt-------------------attttattt------agcATTCTGCTTAA---------TTTTCAT---------GTGTCC----TCTAAC------------------------------------ACATTCCACT------------TTTCTAGGTCTG------------------CAATTCGAT----GCGTCTATTTATTATCTTTG-TAGcataa------------------
i cb4.chrX              I 133 C 0
s caeRem4.Crem_Contig0  1347998 278 -  4500979 -tgcattttctgTGCC------------AACAATCAAAACCATCTACGTCCAACTCA------------TTC--aacctatttttctctgtCAAAAA--------------------CCAACCCTT-TTACAAGTTTTCACTTAAAATTGTCTTAT-AAAACCCCGTTG------GAGCAATAACGTCTTCC-----------TTTTccaga-------acttttttgtaactt-------------------aTTTTCTTT------AGCCATCCGCTTCA----------TTTCAT---------GTGTTCTG--TCAAACATTCCAGTCT------------------CTTGGATAATGTTCTACT-------TTCCATTTCTAGGTCTG------------------CA-----At----gagtttatttatt---tatg-taGCATAA------------------
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold622    96576 300 +   386604 ATGCATTTTCTGTGCC------------AACAATCAAAATAACCCAT-TCTCTGTAA------------TTC--TTCTGATTACCCATGctt-ccag--------------------ttttttctcttttcaaa--ttcactTCAAGTTGTCTTATGAAACCCCCGTTA------GAGCAATAATTTTTCACGTTTTGAGCTATTCTTCTAG----------TT-CTGTAAGTT--------------------ATTTATTT------GGTAATCTGCTTAA----------TTTTAT---------GAGTTTTTT-CTATACATTCCAAATT------------------TCTTCG--ATTGTCTATT-------TCCCATTTCTAGGTCTG------------------CAGTGCACT----GCgtatatttattatttattgtAGCATAATGCTTATTT---------
i caeSp111.Scaffold622  I 24 I 2
s caePb3.Scfld02_0      2630174 305 +  4147112 ATGCATTTTCAgtgccaaaaaagaaaaaaacaatcaaaataacGCAC-CATCTGTAA------------TTG--TTTTGATTCATCTCACTCACCCA--------------------TCCTTTCTC-CACAAAA--TTCACTTCAAGTTGTCTTTTAAAACCCCCGTTA------GAGCAATAagttcttcc-----------ttcttccag----------CTAATgcaattt-----------------ctaatttatttccTATGAGTAGCGTGCTTA---------------AT---------GAGTTTTTC-TCACACATTCcgattt------------------ttgtca--aatttctatt-------tctcatttctaggTCTG------------------CAATTCAAT----GAGTTTATTCATTATTTAAT-TAGcataatacattttt---------
i caePb3.Scfld02_0      I 19 I 3959
s caeJap4.Scaffold17084  307938 355 -   375229 CTATA-TTCCTGCATT------------TATTTTTAAG-----TCAC----------------------GTC--AGTCATTTCTACACCCTT---AA--------------------TTtgtcttt-ttaaaat--ttcactttgaaa---atttgaaatcccCCGTAT------GAGCAATAAATGCACCC-----------CAATTTTAATGTTTCGctttttatgtgttttttctACATTCCGTTTCACAATTCTATTCAAaatttgtaatttacttaccagttctaattttaatttataatgcacgttttta-ttttattttgtatttt---------------atattttct--aatttatatg-------ttctattcctaggtcagattttcattttcacttttcaatccaattttggctttgattta--atttaaa-tagcataatatatttatttttatgtt
i caeJap4.Scaffold17084 C 0 C 0

a score=2323.000000
s ce10.chrX             4393753 12 + 17718866 taaataaaagtt
s cb4.chrX              9688089 12 + 21540570 taaataaaattt
i cb4.chrX              C 0 I 1464
s caeRem4.Crem_Contig0  1348276 12 -  4500979 TAtataaatgtt
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold622    96878 10 +   386604 tgaacaaatt--
i caeSp111.Scaffold622  I 2 I 10
s caeJap4.Scaffold17084  308293 10 -   375229 taaataaact--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2630479 3959 +  4147112 I

a score=-1173.000000
s ce10.chrX             4393765 146 + 17718866 ttttttattaataGTTCAAGATATGAGTCCCCCGAATCCATGTTCTAAACTT-GGTATAAAA-----CTTTAGTTTTTTTTCTACACACATTTTAAAACAGGTTTTAAGTTTTCAATCACGACATGGGTTCAAGTTTCTGA-TTTGATTCAAA
s caeRem4.Crem_Contig0  1348303 107 -  4500979 TCccttctt-----ttc----------------------actttcagCACTTTCAGATTGAA-----CTTTTG-CCTTTTAGTAT-----TTTT--GGCAGGTGTTAAGAATTCAATCACGACATG------TCTGCATGATTCTGATTCCGA
i caeRem4.Crem_Contig0  I 15 I 6
s caeSp111.Scaffold622    96898 124 +   386604 tcCCTGTTTAGAGATTCGAAA------------GAA---ACATTCAAGA----GAAAGTGAA-----CTTTCGtcctttcaattt-----tttcaggacaGGTGTTAGATATTCAATCACGACATGGACATATTCATCTGACTTTGCTTCAGA
i caeSp111.Scaffold622  I 10 I 513
s caeJap4.Scaffold17084  308303 101 -   375229 ------------------------------------------ttttaaattGTCAACTAAAAAATCCCTTTAGCAATCTTCAAAAAAGTATTTCAGACCAGGTGTAAAAAGTTCCAGCACGTCATAGACCAA----------GTTGATTCAAA
i caeJap4.Scaffold17084 C 0 I 3448
e caePb3.Scfld02_0      2630479 3959 +  4147112 I
e cb4.chrX              9688101 1464 + 21540570 I

a score=596.000000
s ce10.chrX             4393911 12 + 17718866 TGAAAAAGTGCA
s caeRem4.Crem_Contig0  1348416 12 -  4500979 TGCCAAAGCGCA
i caeRem4.Crem_Contig0  I 6 I 865
e caePb3.Scfld02_0      2630479 3959 +  4147112 I
e caeJap4.Scaffold17084  308404 3448 -   375229 I
e cb4.chrX              9688101 1464 + 21540570 I
e caeSp111.Scaffold622    97022 513 +   386604 I

a score=0.000000
s ce10.chrX             4393923 2387 + 17718866  
e caePb3.Scfld02_0      2630479 3959 +  4147112 I
e caeJap4.Scaffold17084  308404 3448 -   375229 I
e cb4.chrX              9688101 1464 + 21540570 I
e caeSp111.Scaffold622    97022  513 +   386604 I
e caeRem4.Crem_Contig0  1348428  865 -  4500979 I

a score=3591.000000
s ce10.chrX             4396310 117 + 17718866 TGTTTTTCAATTAGCCTCCTTATTTGAAACGTTCTCGAAATGAACTTTTTGTTTTTTGCCATAACAGCCAAAAGTTAAAAGTGGAAAGAGAAATTTTTGAAACTATTCAGAAGTTAA
s caeSp111.Scaffold622    97535  93 +   386604 TGTTTTCCAATTAGTCGTCTTGTTTGAAGCGTTCTCAGAAAGCACTTCGTGTTTTTAGACAGATC------------------------GAAGTATGTGGAACTTTTCACCAGTTAA
i caeSp111.Scaffold622  I 513 I 77
e caePb3.Scfld02_0      2630479 3959 +  4147112 I
e caeJap4.Scaffold17084  308404 3448 -   375229 I
e cb4.chrX              9688101 1464 + 21540570 I
e caeRem4.Crem_Contig0  1348428 865 -  4500979 I

a score=0.000000
s ce10.chrX             4396427 786 + 17718866  
e caePb3.Scfld02_0      2630479 3959 +  4147112 I
e caeJap4.Scaffold17084  308404 3448 -   375229 I
e cb4.chrX              9688101 1464 + 21540570 I
e caeSp111.Scaffold622    97628  77 +   386604 I
e caeRem4.Crem_Contig0  1348428 865 -  4500979 I

a score=1176.000000
s ce10.chrX             4397213 4 + 17718866 TAAA
s cb4.chrX              9689565 4 + 21540570 TAAT
i cb4.chrX              I 1464 C 0
s caeSp111.Scaffold622    97705 4 +   386604 TGAA
i caeSp111.Scaffold622  I 77 C 0
s caePb3.Scfld02_0      2634438 4 +  4147112 TAAA
i caePb3.Scfld02_0      I 3959 C 0
e caeJap4.Scaffold17084  308404 3448 -   375229 I
e caeRem4.Crem_Contig0  1348428 865 -  4500979 I

a score=26252.000000
s ce10.chrX             4397217 356 + 17718866  
s cb4.chrX              9689569 406 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349293 403 -  4500979  
i caeRem4.Crem_Contig0  I 865 C 0
s caeSp111.Scaffold622    97709 344 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2634442 398 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  308404 3448 -   375229 I

a score=89208.000000
s ce10.chrX             4397573 101 + 17718866 AATTTATGAAACGTCCATTTTTATGATTGAGTGGA-TCTTGAGTAGG---TGCTCTCAACGAGTTCCTCAACGTTTCAAGTAG-CGGGTTTGATCAATTTT---CGCTT-
s cb4.chrX              9689975  98 + 21540570 GTTTGATGAAACG------TTTTTGATTGAGTGGA-TCTCGAGTAAG---TGCTCTCATCTAGTTCCTCAACGTTTCAAGTAGCCCggtttgatcatttttctgtt-tt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349696  99 -  4500979 agtttataaaacgTCCA-TTTTATGATTGAGTGGA-TCTTGAGTAGG---TGCTCTCAACTAGTTCCTCAACGTTTCAAGTAG-CGGGtttgatcactttt---tg-tt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98053 100 +   386604 AATTTCCGAAAGGTCCATTTTTATGATTGAGTGGA-TCTTGAGTAGG---TGCTCTCAACTAGTTCCTCAACGTTTCAAGTAG-CTggtttgatcattttt---tg-tt-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2634840 100 +  4147112 AGTTTATAAAACGTCCATTTCTGTGATTGAGTGGA-TCTTGAGTAGG---TGCTCTCAACTAGTTCCTCAACGTTTCAAGTAG-CGggtttgatcactttt---tg-tt-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  311852 104 -   375229 AGCTTCTGAAACGTCTTTTATTCTGATTGAGTGGACTCTCGAGTAGGTGCTGCTCTTCACTAGTTCCTCAACGTTTCGAGGGG-C-ggtttgatcaatttt---tt-ctt
i caeJap4.Scaffold17084 I 3448 I 285

a score=4062.000000
s ce10.chrX             4397674 5 + 17718866 TTCAT
s cb4.chrX              9690073 5 + 21540570 tttat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349795 5 -  4500979 tttat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98153 5 +   386604 tttat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2634940 5 +  4147112 tttat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  311956 285 -   375229 I

a score=67234.000000
s ce10.chrX             4397679  97 + 17718866 TGGAAA--------GAAAAGAAAAGTACCACTCGACCACACAATAAGCCAT----TTTTGTCCGCTTGAAAGATTC---------------CAGAC-G----TTTTTTCTTTCGTTCGTCGTTTTC--------ACT---
s cb4.chrX              9690078 111 + 21540570 taGACAGGAGCAACGGGAAGTAGAGTACCACTCGACCACACAATAAGCCATTTTCTTCTGTCCGCTTGAAAGAttc---------------cagactt----ttttt-------ttgctcgttttGTCATTTATTCT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349800  91 -  4500979 tggtGA--------GAGAAGTAGAGTACCACTCGACCACACAATAAGCCATT---TGCTGTCCGCTTGAAAGATTC---------------CAGAC-G----ttttt-------ttGCTGGTTTTG--------ACt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98158  92 +   386604 tggtGA--------GAAAAGTAGAGTACCACTCGACCACACAATAAGCCATT---TTTTGTCCGCTTGAAAGATTC---------------CAGAC-Gt---ttttt-------ttGCTGGTTTTC--------ACt---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2634945  91 +  4147112 tggtGA--------GAAAAGTAGAGTACCACTCGACCACACAATAAGCCATT---TTCTGTACGCTTGAAGGATTC---------------CAGAC-g----ttttt-------ttgctggttttc--------att---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  312241 112 -   375229 tgagaa--------aaaaagtagagtACCACTCGACCACACAATAAGCCAT----TTTTGCCCCATTCCAGTATTTTCAATCACTCCTGTgcaaac-ttttcttttt-------ttcttctttttt--------tcttct
i caeJap4.Scaffold17084 I 285 I 784

a score=23506.000000
s ce10.chrX             4397776 48 + 17718866 GCCGCC-----GGACTTTT-----------------CC----TGATGAGGGTCCGTTCGTGCTTAAGCTGTTTT
s cb4.chrX              9690189 70 + 21540570 GTCACGTCTCTAAACTTTT---TGGTAAATTGCCTTCTCTTGTGATG-GGTTTCGTTCGTGTTTAAGCTGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349891 60 -  4500979 gccaaa-----aaactttt---cggt--aTTAGCTGCT----TGATGAGGGTTCGTTCGTATTCAAGctgtttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98250 62 +   386604 gccaa------aaatttttttctggt--acTGGCTGCT----TGATGAGGGTTCGTTTGTGTTCAAGctgtttt
i caeSp111.Scaffold622  C 0 I 339
s caePb3.Scfld02_0      2635036 59 +  4147112 cccaa------aaactttt---tggt--attGGCTGCT----TGATGAGGGCCCGTTCGTGCTCAAGctgtttt
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold17084  312353 784 -   375229 I

a score=-1689.000000
s ce10.chrX             4397824 12 + 17718866 GCGACCC--------CCACC
s cb4.chrX              9690259 12 + 21540570 CGCAATT--------CCTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349951 20 -  4500979 tcgagttttttttgccTCTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2635095 29 +  4147112 I
e caeJap4.Scaffold17084  312353 784 -   375229 I
e caeSp111.Scaffold622    98312 339 +   386604 I

a score=-971.000000
s ce10.chrX             4397836 14 + 17718866 --------------ACATCTCACAGCTT
s cb4.chrX              9690271  5 + 21540570 GAAAC-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1349971 28 -  4500979 GAACCCTCCCAACGACGACTCATAGCTT
i caeRem4.Crem_Contig0  C 0 I 352
s caePb3.Scfld02_0      2635124 14 +  4147112 --------------TCGACTCACAGCTT
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I
e caeSp111.Scaffold622    98312 339 +   386604 I

a score=-488.000000
s ce10.chrX             4397850 123 + 17718866 GCTCATTTAAAGAAAA-------TGACT----AGAAGCTGAA----TCCTATATCCAGAGTTCTAGA--------------GTGGATATAAACCACTCCATTTTT----TCGTAGGATTTTTATTGTATGTTTTATAGCAGTAAGCATTTTATAAT-----
s cb4.chrX              9690276 131 + 21540570 -----TCTAAGAAAAAATACAGCTGACTTCTCGAAAACTGAATAATTCCTATATGTATACTTGGTATT-------------GGGGCCGTTGGACACCCTTCTcga----tc--aaattttttatc-gaGGTTTTATAGTAGTACACATCTCAGGTT-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2635138 140 +  4147112 ----CTCT---------------TGAATTGACGGAAACTGACTAATTCTTATGTGTTTGGTTGTGGTTTTATGTCTAGAAGGAGGAAGACGAGTACGCGCTTCTGATCTTC--AAGAATTTTATCGGATTTTTTATAGTAGTACACCTTCTTTTTTATAGT
i caePb3.Scfld02_0      C 0 I 93
e caeJap4.Scaffold17084  312353 784 -   375229 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=688.000000
s ce10.chrX             4397973 37 + 17718866 CAAGGTGCACACCCCCCCCCCCCCCCCCCTTTTGATT
s cb4.chrX              9690407 37 + 21540570 TATGGTTCTCACCGGCTCTCTCTCTTTCACATTGTTT
i cb4.chrX              C 0 I 1056
e caePb3.Scfld02_0      2635278 93 +  4147112 I
e caeJap4.Scaffold17084  312353 784 -   375229 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=0.000000
s ce10.chrX             4398010 54 + 17718866 ATTTGTTTTTCATATTTTTGGTTTTAGGCACTCCGACAAGTGGTTGGGGTTATG
e caePb3.Scfld02_0      2635278 93 +  4147112 I
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=1252.000000
s ce10.chrX             4398064 156 + 17718866 CTAAAAATATCACtttttaaaattttaaaatttataGTTTATGTTGTCACTCACAATTTTGGAAATGAAGAAAATAATTTTTTTGCTAGGAGTTTTATATTTAAATTACGCTTGTATTGACTGGATTTGAAAATGTTTAGGATT--AAATGTTCATAA
s caePb3.Scfld02_0      2635371 141 +  4147112 ctaaaaaaacgATATTCATATATCTTATAGTCAGTAGATGATCT--------AtaaactggaaaactgaaaatataactttttttgcaaaaatgttcC------ATTATACGTGAATAGTTCGAGTACCAAAATG---GGGATTTcgaagtttcagaa
i caePb3.Scfld02_0      I 93 I 205
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=0.000000
s ce10.chrX             4398220 239 + 17718866 TGGCTTAAAGTTTTTTTTTTGACAAGAACTTTGTCGGGATATATTGAAAATGTTGAAATTTTCGATTATGGAGTGTTTATGATAAGAATTATAATATTTGGTTTAGACAAATATGGAACGAAGTCCCCAAATTGTTATTGGTTAGTGTTACTGCTTTAAAAATTAGACAAACTGAAAATTTCAATTTCACCTGCCAAAAAGAACCTGTAACAAAAACACGTATCTTTTTAACAACTACG
e caePb3.Scfld02_0      2635512 205 +  4147112 I
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=-4525.000000
s ce10.chrX             4398459 720 + 17718866  
s caePb3.Scfld02_0      2635717 745 +  4147112  
i caePb3.Scfld02_0      I 205 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I
e caeSp111.Scaffold622    98312 339 +   386604 I
e caeRem4.Crem_Contig0  1349999 352 -  4500979 I

a score=613.000000
s ce10.chrX             4399179 4 + 17718866 TCAA
s caeRem4.Crem_Contig0  1350351 4 -  4500979 TTGA
i caeRem4.Crem_Contig0  I 352 C 0
s caePb3.Scfld02_0      2636462 4 +  4147112 TTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I
e caeSp111.Scaffold622    98312 339 +   386604 I

a score=2548.000000
s ce10.chrX             4399183 11 + 17718866 ACTACATGAGA
s caeRem4.Crem_Contig0  1350355 11 -  4500979 CCTACACAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98651 11 +   386604 ACTGCACAAAT
i caeSp111.Scaffold622  I 339 C 0
s caePb3.Scfld02_0      2636466 11 +  4147112 ACCACACAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9690444 1056 + 21540570 I

a score=22380.000000
s ce10.chrX             4399194 191 + 17718866 ----------TCTAAAATAAACAACATTTAAGTTCTAATCCC---------CTTTTAAGTAAACTACT-TCTTGTTCAAAGTGACCGCTTCCTTCTTTTTCTTTGTATTTATTCATTTTTC------------AATGACACTAATTGCTCTTAAA--------ACACGTTTG--CAACATCTGCGTTTTTTTCAGCAAGGAAGGAATTG--CC------CTTATTATCAAGAGCTCAGCAT----------------------------
s cb4.chrX              9691500 196 + 21540570 ----------TCTAAAACAAACAGCA-------ACTAATCCTTT--------CTCTTACTAGAAACAT-ACTCGTTC-AACTGACcgcttcctttttctcttttctgtttttctcttgttttctcATCTGCCCAGTGACACTAATTGCGCTTGAAACATACGGACACGTTAGCTCAGCATCCG-------TCCATC--------TATTGGCCTTATAAACTTtcatttatctgaaaat-------------------------------
i cb4.chrX              I 1056 I 68
s caeRem4.Crem_Contig0  1350366 177 -  4500979 ----------cctaaaataaacaaaaactaaaCACTAATCCTTTAAAGTTGCTTTCTACTAAAATAAT--TTCGTTC-AACTGACcgcttccttttt-tctcttctcttttcccccTATTC-------------ATGACACTAATTGCACTTGAA--------ACACGTTTG--CAGCATCCG-------Tcca-----------------cttctcttctttttttcgaatgcacAT-------------------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    98662 164 +   386604 A----------CTAAAATAAACATCT---AAACACTAATCCTTCAAG----TTTTCTACtagcaactttttttgttc-agctgaccacttcc---------------ttttttcactaTCC------------GATGACACTAATTGCACTTG---------------------CAACATCCG-------TCCA-----------------CT------CGCTTTTTCAAATGCACATCTTTCCATTATCTT---------ATTGCCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2636477 207 +  4147112 ATTTAGATGTcctaaaataaacaaat-----acTTTAAtccttgaaacttttttcttactagaaaacttctttctt----ctgaccgcttccttttt-cacttcccttttttctcctatCC------------AATGACACTAATTGCACTTGAA--------ACACGTTTA--CAACATCCG-------TCCA-----------------CC------CCTTTTTTCGAATGCTCATCTTAACATTACCTCATCCCTTCAATTGCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I

a score=-11449.000000
s ce10.chrX             4399385  62 + 17718866 ATTCAATTTTTCGTACCGCAT--------------ACGTTTTGCAGTTTATCTCACCTG-------------------CTTTCG---------TTATTGTGGCT-------
s caeRem4.Crem_Contig0  1350544  71 -  4500979 -CTTG--TGTTA---CCGCAT------GTGCCGCTGATTGCCACGATTAACAGAATTCATA-----------------TTCCCGCTTCA----TTATCAGAAAC-------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    98826  82 +   386604 ACTTAACTGTTT---CTGAAT------GCGataacacttttttcatatttcttttttcg-------------------cttctGGATAACAT-TCTCCGAAAGTCCAGaca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2636684 108 +  4147112 AGTTAAAAGTTC---TCCAATTCAATAGCATCTTCATATTCTTccgctctttttctttgtaacTCTTTCAATCTGAATCTCTcgaattatttgttttcaaaagtccaGACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I
e cb4.chrX              9691696  68 + 21540570 I

a score=-25197.000000
s ce10.chrX             4399447  86 + 17718866 ---TGCTTATCCGGTTACAATCAAAAATTTCAATCA---AATTTCCGGTGTTATGTC----TGACACTTTACC---------CTAGCACATTCAA-----------------------GATCAAACCC
s cb4.chrX              9691764 108 + 21540570 tgtttctt-tggatttattcgaaaattttgaa-------ctttgacaGTGCTCAATCGAATAAACTTGAA------------ATTGTATAGTTCGATACTGCAGCTGCAATTTGATAAAATCAAATTC
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig0  1350615  64 -  4500979 ------------------------ACCTTATT-------ATTTGTCAacgc----------aaaaattga------------tttatacAAACGGGGTTTTTACCTG-----------actcaatttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    98908  93 +   386604 ---tgttt-ttcatttttgatc-aaCCTTGTAATC----ATTAACTACTACTCAATC----AAATATCTAACCAGACACAAGTTAGCATAACTTGGTTTACC----------------------ACTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2636792  86 +  4147112 ---TACTTATCCATTCacaatcaaattttccaatcTCCAATTTTCTAGTTCTGACTG----Acaccttt-------------ttctctcaatcaaatatttt----------------------tttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  312353 784 -   375229 I

a score=12631.000000
s ce10.chrX             4399533 142 + 17718866 TCTTTTGGAAAA-----------TTAGTTAT-----------------------ATTTCTATTTTTTTTTTTTT------------------------TCAAAAAAGAAATTGTTT----TAAA--------CCATAGAAACATC-GTTCAAACGACCAATAATCT--AGAAT------------GTTTC-ATGATGGATTGGTAAGATGAACTTATCGAATGAGCAT------
s cb4.chrX              9691872 188 + 21540570 ATGTCTAAGGAGAAACCTATTACGTAGATAT--CTTCAAACTCCAAATAT----TTGCATATCTGTTTCATT-TCAAACACCAc-------------------------gcagctg----aaaattcaaga-gaaACGAAACATCGGATATGATGATcaataatctaaaaaatgagaaaaga---gttTCTTTGATGGATTAGTGAGATGAACTAATCGAATGAACAT------
i cb4.chrX              C 0 I 3053
s caeRem4.Crem_Contig0  1350679 193 -  4500979 atttttctgaaa-----taatacgCACGtatggtttttgatttttgatat--------aaagAGTTTTCATTGTTCAGCGAcacagttctgaaaaaattagaaatgtgagcagctg----aaaat----------gagaaacatcAGATAGA--GACCAATAATCt--tgcattaaaaaaat---gtttc-atgatGGATTGGTTAGATGAACTTATCGAATGAAcat------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622    99001 145 +   386604 ATTTATCCAGAA------------CAATCAT-----------------------TTgatcaaacttttt-------------------ttggggaaattgaaaagtggagCAGCTG----AAAA----------------------GATAGAATGACCAATAatct--aaaatgaaaaaaaaagagtttc-atGATGGATTGGTGGAATGAACTTTTCGAGTgaacat------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2636878 173 +  4147112 acgtagccaaaa-------------aatcat-------aaatttttatGTGCTCTTGGATAATTGTTTTATCAT---------CTGTTTTGTGAGAAATAGGGAAACGAGCAGCTGAAATAAAA----------------------GATAGAGTGACCAATAATCT--GACAtggcaaaaaaat-gtttc-atgatGGATTGCTGAGATGAACTTATCGAGTGAACAT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  313137 152 -   375229 -tttttcccgaa--------------attct-----------------------TTGCTATTCTATTTAATGTT-----------------------------------GCGTCTA----AAAAGTATGTATGCAGGGAGAGA---ATTTAAAAGACCAATAACCTCgaatatgagaaaaaaaa-gtttc-atgATGGATTTCTCAGATGAACTTATCGAATGAACATACATTT
i caeJap4.Scaffold17084 I 784 C 0

a score=3401.000000
s ce10.chrX             4399675 13 + 17718866 TCTGTCTCTAGCT
s caeRem4.Crem_Contig0  1350877  9 -  4500979 ----ttttttttt
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    99146 13 +   386604 cattttttttgtt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2637051 13 +  4147112 TCTGTCTCTTTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  313289 13 -   375229 TCTATCTCTtgct
i caeJap4.Scaffold17084 C 0 I 3856
e cb4.chrX              9692060 3053 + 21540570 I

a score=-801.000000
s ce10.chrX             4399688  6 + 17718866 GAAAAG--------
s caeRem4.Crem_Contig0  1350886 14 -  4500979 gactgtGTCAGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    99159  6 +   386604 gaatag--------
i caeSp111.Scaffold622  C 0 I 377
s caePb3.Scfld02_0      2637064  6 +  4147112 GAATAG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=1697.000000
s ce10.chrX             4399694 69 + 17718866 ------AAGAAGCAGTCATATGC----AACTGGTTAT----CTTCATGACGTACT------------CAGTTCATTTCTCTTTTCGAACATTCTT
s caeRem4.Crem_Contig0  1350900 78 -  4500979 ------ATTCAGCAGTCATATGTTGTATTCTGTTTAA------TCGTGACGTTTCAACATTCGAAATCATTTTACtgtttatc-----cattttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2637070 79 +  4147112 CACAAGCCACAGTGGTCatatgt----ttcttttgaaagtttttcatgaCGTGTC------------CCTTTTACTGTTCATTGAACACGTTTTT
i caePb3.Scfld02_0      C 0 I 1499
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99165 377 +   386604 I

a score=105.000000
s ce10.chrX             4399763 56 + 17718866 TAAACTAATACTTTTAATGAGACAACAATTGTTTAGAATGTAAAGTTTTGAAAAAT
s caeRem4.Crem_Contig0  1350978 50 -  4500979 ttagTGTGTA-TTGTACTTTCACGTTTACTATTTA-----TACAGCTtggaaaaat
i caeRem4.Crem_Contig0  C 0 I 226
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99165 377 +   386604 I

a score=0.000000
s ce10.chrX             4399819 877 + 17718866  
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99165 377 +   386604 I
e caeRem4.Crem_Contig0  1351028 226 -  4500979 I

a score=91.000000
s ce10.chrX             4400696 1 + 17718866 T
s caeRem4.Crem_Contig0  1351254 1 -  4500979 T
i caeRem4.Crem_Contig0  I 226 C 0
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99165 377 +   386604 I

a score=12889.000000
s ce10.chrX             4400697 198 + 17718866 GGCTTCTGGCGACCA-GAAAATGACGATT--ACCCCTTCCCTTCGCA-TTTTTTACTCACCGAACCATAAAAGGTGAAAGAATGATCCGCGCGTAAAAA-AGGACACTTGACACGTGAGATCCTGTTACAAATGTGGCTATTGAAACCCACCTGGAGTACTCGGTATTTT-----------------------------GTCGTATTTAAAATTCAATAGTG------TTTTG----AAAAA--------
s caeRem4.Crem_Contig0  1351255 246 -  4500979 GACCTCTGGTAACCA-AGAAGTGACGATTAAACGCCTCCCTACcacattttttggctcaacGAACCATGAAAGGTGAAAGACTGATCTATGGGTAAAAATAGGGCACTTGACACGTGCAGGCTCGTTTTCAATTAGTCACTCAGAAACCACCTGAAT---TcggttttttcagaaaaaaattgctgGTACCTGACATAAGGAGTATCAAATGTTCGATATAGCTGATTTTTTGCTCCAAGGAATTAAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    99542 187 +   386604 GACTTCCAGTAACCAGAAAAATGACGATTTAACGCCTTCATTCACC--TATTTGGCTCAACGAACCATGAAAGGTGAAAGACTGATTCTTGAATATAAATAGGGCACTTGACATATTGTGGCCCTTTTCCAATTACTCTTCCGTAAATCAACTGACG---TTG-----------------------------------------------TGTTCAATTTTGAGCAGCTTTTG----GAAGAA-------
i caeSp111.Scaffold622  I 377 I 660
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=233.000000
s ce10.chrX             4400895 28 + 17718866 TATGA---------------GAGCAAAAGTTCATTATTGTAAA
s caeRem4.Crem_Contig0  1351501 43 -  4500979 TTTGAACAGTGTTATGTTCAGagaaaatgcacaattttGCAAA
i caeRem4.Crem_Contig0  C 0 I 35
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99729 660 +   386604 I

a score=0.000000
s ce10.chrX             4400923 20 + 17718866 TGGTTGGTTTGATTCTGTAG
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99729 660 +   386604 I
e caeRem4.Crem_Contig0  1351544 35 -  4500979 I

a score=-214.000000
s ce10.chrX             4400943  82 + 17718866 TTATAATT-----TGCCAGTTTTAAGAATT----ATGTGCTTATCGAAGTAG-------AACTTTGTTCAATTT-----------------CTAGAACGCGT------------------TTATTTTGTTTAA
s caeRem4.Crem_Contig0  1351579 133 -  4500979 TTATAGGTGAAAATaccgatttgaaaaatttgaaatatactGCTTAAGTTGGGATAGGCAAACATTCTCAATTTAAATGGTGTCATTATTACTAGAACGTCTCACTCATCCACTCActctttacttttttcac
i caeRem4.Crem_Contig0  I 35 I 136
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99729 660 +   386604 I

a score=0.000000
s ce10.chrX             4401025 91 + 17718866 AATAAAAAGTCTCACTTGAAAAGTGCAAAAATACTCGTTAGTTCCGCTACAACAAATAGATAATTTTGTATTCTGAAGTGACATATTAAAA
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99729 660 +   386604 I
e caeRem4.Crem_Contig0  1351712 136 -  4500979 I

a score=504.000000
s ce10.chrX             4401116 12 + 17718866 ACCTAAAAGATA
s caeRem4.Crem_Contig0  1351848 12 -  4500979 ACCGAACAGATC
i caeRem4.Crem_Contig0  I 136 C 0
e caePb3.Scfld02_0      2637149 1499 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622    99729 660 +   386604 I

a score=48816.000000
s ce10.chrX             4401128 428 + 17718866  
s caeRem4.Crem_Contig0  1351860 492 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold622   100389 452 +   386604  
i caeSp111.Scaffold622  I 660 C 0
s caePb3.Scfld02_0      2638648 458 +  4147112  
i caePb3.Scfld02_0      I 1499 I 35
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=0.000000
s ce10.chrX             4401556 5 + 17718866 GGAAA
e caePb3.Scfld02_0      2639106 35 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   100841 0 +   386604 C
e caeRem4.Crem_Contig0  1352352 52 -  4500979 I

a score=221.000000
s ce10.chrX             4401561 21 + 17718866 AAGAAAAAAACACAGTGGAAA
s caeSp111.Scaffold622   100841 16 +   386604 -----AGAAGCAAATTTGGGA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2639106 35 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeRem4.Crem_Contig0  1352352 52 -  4500979 I

a score=177.000000
s ce10.chrX             4401582 4 + 17718866 GTCT
s caePb3.Scfld02_0      2639141 4 +  4147112 GTCG
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   100857 0 +   386604 C
e caeRem4.Crem_Contig0  1352352 52 -  4500979 I

a score=-38288.000000
s ce10.chrX             4401586 275 + 17718866 ------------TAACTATTTTGAGAACGGTTTTTATAAAGGTTCAGAATTCAACTTTTGttaaaggtggagtgcggccactagaa----aaataaactattattataatgc-taaaataactgaatgaatataacacttttcaaaacaaaattgaaa-------------------------------atgatacatttcgagtcaa------------------------------aatttgtg----aaaacttagttttaccaattttttggaag--------tcgacgatcgaaaaaa--aaattCCA---GGAAATTAAGTTT----------------AAAAAGT---------ATATGTTTTATTTGTATTTGAA--------GTTTTGAAAATT-
s caeRem4.Crem_Contig0  1352404 269 -  4500979 ------------CATTTGTTCTCAGAACG--TTTCAGTGTGTTTGAGGAT----TTAAGAACTACA--GTAGTGCGTT-TCTTGCAGTTGAGCTAGGCTTTTGTGTTATTTATTGATATAGTT------CTCTTAAAGTA---GATAATGAATCAAAA------CTAAACtcctgaaaaagtttttcgtgTGATTATCTGGGATTC--------------------------------AACTTTTG--------CTTAGTCTTACT-ACCCTTTGAAAG---ACACCGCGGTAATGCATTCAA---------G---TACTTTTTGATAT-------------------ATGT------------------ATTCCGAGTTAGGCA------TTACTGGGAGGTT
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold622   100857 188 +   386604 -----------GAATTATCTTTGGACTAG--TTTTtgtcacttc----------ttttttcttacatAGAA--------TCTTTAA-----------CATTTAGTTTGATGC--------------------TAAGACTCt--ggaaaaaacttgaaa--------------------------------------------------------------------------------aacttgtt--------tttcagttt--------tttgaaaa-----------atgatcgacgtga--aaaacttg---aaacttttAATAT----------------AACCTAC-----------ttacaatttttcaact------------tctctgGAAACT-
i caeSp111.Scaffold622  C 0 I 16
s caePb3.Scfld02_0      2639145 364 +  4147112 CCACTTTTTCGACATCGATTCTAAGAACG--TTTTAGCCGTTTCCGAAAT----CTTTTGGTTACGGTGTATTGCCTTTTCTCGAA-----------CTTTTCTTCTAATCcgagaaata----------tttcaaatttt--gaaaagagctCAAAAGGAAAGTTAACTTTATG--GGTGGTTGAAGTAGGATTAAAGTAGATTCAGAGTTGGTGATAATAAATTCGAAATGGTAGGAAATTGTTCCAGTAGACTTAACTTT--------TGTGGTAAAAGTGACTCTGACGATGGACTTAACCGGAATTTGTGCAAACTCTCAGTTTTCGTTTTGAGTTTCTCAGCATGCCTGTCATGAGTTTACTTCGTTTGAACTTCAATATTGTGCTCTGTGGAAAAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-1942.000000
s ce10.chrX             4401861 19 + 17718866 GAGTTTTGACC----------TCTCAGTG-----
s caeRem4.Crem_Contig0  1352673 11 -  4500979 TAGTTTCTACC-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2639509 34 +  4147112 AAGTTTATGTTTGAGAAATTATCTCAAGTAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101045 16 +   386604 I

a score=-11289.000000
s ce10.chrX             4401880  66 + 17718866 ACTATAAAAAAACCATTATAT-------------------------------AACAAAATTGTAGTGATTTTTCCACT----ACCC--GTATT-------------------CCACCTCCAA
s caeRem4.Crem_Contig0  1352684  46 -  4500979 ----------------------------------------------------GAAACAATATTAATGGTGTTCCCACTCACAACTCTTGGACC-------------------TCTAT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101061  79 +   386604 ATTGCaaaaaaagcattattttgaaatacacTATCTTGAGGCT-----ATtgtaaataattttga-----------------accc--ggatt-------------------tctcttctta
i caeSp111.Scaffold622  I 16 I 29
s caePb3.Scfld02_0      2639543 113 +  4147112 ------ATAAATGATTAATTTAGGGAGATATTACAGTTGGTTTAATTgattgttca-aattttgattgaagttTTGCTCATGGCTC--GGATTCGATAAGAATCTTCGCAAGTCCtttatta
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-2062.000000
s ce10.chrX             4401946 31 + 17718866 ----------------------ACTACCGAACGCCTGGAGATATTAGATTTTT
s caeRem4.Crem_Contig0  1352730 43 -  4500979 ----------GCATTTATGAGTATTGTCCGAAGTCTAGAGCCCCCAGATTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2639665 28 +  4147112 gaCATCACAAACATTTGTTAATATTATT-------------------------
i caePb3.Scfld02_0      I 9 I 8
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101140 29 +   386604 I

a score=-5473.000000
s ce10.chrX             4401977 42 + 17718866 -------------TTCAAAATTTCCGATCAAGAGAAAAGTTCCATATTCAATTTG
s caeRem4.Crem_Contig0  1352773 31 -  4500979 CCGAGCAAAAGAGTTTTTGTGTCTtag-----------tttg-------------
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold622   101169 33 +   386604 -------------tCCCTGTTTTCCAAT---------ATCTCACAATTCATCTTG
i caeSp111.Scaffold622  I 29 C 0
s caePb3.Scfld02_0      2639701 32 +  4147112 -------------ttcttgttttcttg----------atttatCTACCCACACTT
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-3021.000000
s ce10.chrX             4402019 70 + 17718866 TAAAAAATCTGCAAA------AAATTGGGTAAACGAGCAGAAACCTTGTTCCAAAACCAGAAGGTTTTTTTTAAAT
s caeSp111.Scaffold622   101202 68 +   386604 TCATAAACC-ACAGt------aggaaaacaaaattggTAGTGCTTCTGAATCACGCTCC-AATTTTCTCATGTCTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2639733 74 +  4147112 GTACCAATC-ACAGTGCCCCAAAATAACCTGAGTGAGAAAGACTGATTGACAAAAACCC-AATTTCCTTTCTTCGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeRem4.Crem_Contig0  1352804 33 -  4500979 I

a score=-7802.000000
s ce10.chrX             4402089 33 + 17718866 CTATAACCACATG-GATACACAAT------------------------------TTTGAATTTA
s caeRem4.Crem_Contig0  1352837 36 -  4500979 CGGTAACCACATGTACTTTACATC------------------------ATTTTGTTCATA----
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold622   101270 51 +   386604 ------CTTTATG-ACTTGACATC------AAAACATACGGTaacaaaatttgttttggaTTTA
i caeSp111.Scaffold622  C 0 I 74
s caePb3.Scfld02_0      2639807 51 +  4147112 ------CTATA-----CTGACATTTTTGAGTGATGTTCCTGTACCACGGAT--TTCCATATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-1310.000000
s ce10.chrX             4402122 25 + 17718866 -GAATTATTCACACA-AATTTTCACCT
s caeRem4.Crem_Contig0  1352873 24 -  4500979 GCATTT--Tct-atataattttcaaat
i caeRem4.Crem_Contig0  C 0 I 19
s caePb3.Scfld02_0      2639858 20 +  4147112 -CAATTAATCTGACATCATTT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101321 74 +   386604 I

a score=294.000000
s ce10.chrX             4402147 19 + 17718866 TTTTGGAACTTCA---TTTTTC
s caePb3.Scfld02_0      2639878 22 +  4147112 TTGCTGCACTCCGCCCTTTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101321 74 +   386604 I
e caeRem4.Crem_Contig0  1352897 19 -  4500979 I

a score=-1789.000000
s ce10.chrX             4402166 50 + 17718866 AAGAACAAGTTTTCAGATTTGATCCTAG--------GAATCTCGTTTTCCATCTCTTT
s caeRem4.Crem_Contig0  1352916 58 -  4500979 aaggaaaaatgttcattaCTGACTTTGAATAACAAGGAAGTacgtttttcttttagtt
i caeRem4.Crem_Contig0  I 19 C 0
s caePb3.Scfld02_0      2639900 43 +  4147112 ----AGACACATT-----CTGACCCTACTTAA----GGAGTGGTTGTTGCCCCCAG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101321 74 +   386604 I

a score=-11435.000000
s ce10.chrX             4402216 159 + 17718866 TCAACTCTTTTATATTTGTTGTTCAAAAAAACTCGGCATTGAATACTC-------------------------------------------------------------------AATATTTTGAACTTTAAAAAATG-----------------------------TTTAAAAC---------TTTTCCATTTC----AAAAATCTTC---------AGTTGCTCAGTTGATATATTCTAGGAGT----------------TTAAGCTTTGATCACAATGCTTAATTTTTCA
s caeRem4.Crem_Contig0  1352974 118 -  4500979 -------tcttGTTACTGATGTTCctattattttaaaatt---------------------------------------------------------------------------cttattccgaa----------------------------------------------------------tgttttgttttttgactaaa----------------------------aGTTTTCTGTGGCTAAA-------ACACAATCGAACTTTGATCGTGTCTCTTAATTTTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101395 138 +   386604 ------------------TCGATTCTAAGAACATAGaagtt--------------------------------------------------------------------------caaattcaaaaaa----aaagtg-----------------------------ttcattgt---------tgtttcgttttcttaAAAACTCATC-------------TTTGAAGTTGAGTTTTCTGGAACTGA--------ACACAATCGAACTTTGGTCGTGTCTCTTAAtttttcc
i caeSp111.Scaffold622  I 74 C 0
s caePb3.Scfld02_0      2639943 293 +  4147112 TCATCCATCTTGTTCCTGTTGTTCTCACTAATATACAGCTTGACATCAAAATGTACCGTAGTCAAACGTATTTTGTatctaaaatcttttttcggatTATGTCCGGAATGACTGCCATAATCAAAAGGCAGCAAAGTGGAAAGCAAATTCTCATTAGTGATTTGAACTTCGTTCTGGTTCCTAATGTTCCCTTCTCAGCAAAAATCATCagcattccaaattttttgtgttctaaTTCGTAGAACCGGAGGGTAGCACGGAAACGGACTTTGATCGTGACTCTTAATTTTTCC
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-814.000000
s ce10.chrX             4402375 17 + 17718866 ---TGCTCAGCTACCACAAT--------------
s caeRem4.Crem_Contig0  1353092 33 -  4500979 -GGTTGTTGTTTTCCAGAGCAGTTTTCCATCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101533 34 +   386604 ggtcttttatttttcagagcattttgccactcat
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2640236 34 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=1226.000000
s ce10.chrX             4402392 107 + 17718866 CGGAAGTTGTTGCCAGTTGTTTTTA--AGACTTTTAATTCCTGTTTAACAA--ACAACATCATCAT-AAAAATGTTCTTCATTTAGT-----------AAATTTCTTTGAGCC-----------------------------------------------TTAGC-TTAAA-----
s caeRem4.Crem_Contig0  1353125 173 -  4500979 CGGAAGTTTC--CAGTTTGTTTTAGC-GGATTTCTTATTCCTGTCTGTTAATCATGAAAACAACATCCAAAACATTTCTAGATTGGTTTCCTGTCATTCAATTCCGTTTTATCTATCTAGAAGATGAATCAGACAAAGTCAAGAAATTAGTTGCTTTCATTTGGCAGCAGCTAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101567 109 +   386604 cggaagtttt-----cctgtttttccagagtttttgatttgtcATCC------ATGAAAACAACTTTTAATCCATTCCCTTCATAGTTTCTCGTTATCCTGTTCTAAT---TC-----------------------------------------------TTAAC-ACAGA-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640270 120 +  4147112 CGGAAGTTTC--CAGCTTGTTTTTCTCGGATTTCTGATTCCCCCTCCTCCA--CCAAAAACATTATCCAAAACATTCCTCAATTAGTTTCCCGtcattcaatttcagttaATC-----------------------------------------------TAAACGATAGA-----
i caePb3.Scfld02_0      I 34 I 108
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=-5915.000000
s ce10.chrX             4402499 61 + 17718866 -------------------AAGCTAATCAGTTTCA-------------ACCAAATTCC--GTAAATCACTACACTTTTTCATAGTCTAAAGGTCA-----
s caeRem4.Crem_Contig0  1353298 86 -  4500979 ----ATGTAGCTG-GCTCCG--------ATTTTCTCTGTTCTTATCACACTGAAACGTGGATAATTTCCAA-ACTTTGTTAAATCTTACTGAACTTAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101676 80 +   386604 ATGATTGTAATTGAGATACAAgaaatgcattttct---------tcgaattaaAACGC--ACAGAttgcag----tttttgaatacaagTAAACA-----
i caeSp111.Scaffold622  C 0 I 8
e caePb3.Scfld02_0      2640390 108 +  4147112 I
e caeJap4.Scaffold17084  313302 3856 -   375229 I
e cb4.chrX              9692060 3053 + 21540570 I

a score=602.000000
s ce10.chrX             4402560 3 + 17718866 CTT
s caeRem4.Crem_Contig0  1353384 3 -  4500979 CTT
i caeRem4.Crem_Contig0  C 0 I 13
s caeJap4.Scaffold17084  317158 3 -   375229 CTC
i caeJap4.Scaffold17084 I 3856 C 0
e caePb3.Scfld02_0      2640390 108 +  4147112 I
e cb4.chrX              9692060 3053 + 21540570 I
e caeSp111.Scaffold622   101756 8 +   386604 I

a score=-7280.000000
s ce10.chrX             4402563 49 + 17718866 GCTCTTTC----ATATCT---TTCTTAATTTCATCCACTTTTGGTCCAGGTTCTCT-------
s caeRem4.Crem_Contig0  1353400 32 -  4500979 GCT---------CTGTCT---ACCACAAGTTCATTA------------TCTCTTCT-------
i caeRem4.Crem_Contig0  I 13 I 11
s caeSp111.Scaffold622   101764 40 +   386604 atttttcttct-atatTC---ATTACGATTCTAGCT------------CGTTTTCC-------
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0      2640498 43 +  4147112 Gttccttttttgatatat---ATCACAAACTCAtttg----------acgtttttt-------
i caePb3.Scfld02_0      I 108 C 0
s caeJap4.Scaffold17084  317161 48 -   375229 ---CCTCCTCC-ACATTCCAATTCCTCAATTCATTTT-----------GGGTTTCTATTCCGT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9692060 3053 + 21540570 I

a score=106074.000000
s ce10.chrX             4402612 140 + 17718866 CCATTTGTCTGCTTTAAAACCT---TGA-AAACCACCG-----AAAGCATCGCCTAGTCTT-GGCAAG-TTTTTCTGCCCGCTGG-----CTCCTTC-CTAAACCACGCCTACCAGCTGCCGGCTCAGTGTTGCTCGCACAGCACTTTT--GGCAAAAC
s cb4.chrX              9695113 151 + 21540570 CCATTTTCATTTCTTGAAATCTTCGTTA-AAACCAA-AC----GAAGCACCGCCTAGTCATGGCAAGtttttttCTGCCCGCCGGGCCCTCCGCTTC-CTAGACCACGCCTACCAGATGGCGGCTCAGTGTTGCTC-CACAGAGCTTTTTCGCCCAAAA
i cb4.chrX              I 3053 C 0
s caeRem4.Crem_Contig0  1353443 142 -  4500979 TCATCAGCTTTCTTTAAAACCT---TGA-AAACCAGCGG----GAAGCACCGCCTCGCTTTCGCCAAGTTTTTTCTGCCCGCCGG-----CCGCTTC-CTAGACCACGCCTACCACCAGCCGGCTCAGTGTTGCTC-ACTAGCACTTCT--GCCCAAAA
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   101804 139 +   386604 CATTTGGTCTT----AAAACCA---GGAGAAACCAACAC----ATAGCACCGCCTTGTCTT-GGCAAGTTTTTTCTGCCCGCCGG-----CCGCTTC-CTAGACCACGCCTACCAGCTGCCGGCTCAGTGTTGCTCACATAGCACTTTT--GCCCAAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640541 143 +  4147112 tcttcattcttctccaaaacCT---TTA-AAACCAACGG----GAAGCACCGCCTTGTCTTAGGCAAGTTTTTTCTGCCCGCCGG-----CCGCTTC-CTAGACCACGCCTACCAGCTGCCGGCTCAGTGTTGCTCACATAGCACTTTT--GGCCAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  317209 139 -   375229 -------CTTGCATTAAAACCC---TGA-AAAccaacagaaaaaaagcacCGCCTAGTCTT-GGCAAG-TTTTTCTGCCCGTCGG-----CCTCTTCTCGAAGCCACGCCTACCAGCTGCCGGCTCAGTGTTGCTCGCACAGCACTTTT--GGCCAAAC
i caeJap4.Scaffold17084 C 0 I 533

a score=3886.000000
s ce10.chrX             4402752  70 + 17718866 CGAGGCACAC--GCCGGCTTG---TGAACAT-GTTTTCATGATTTCTT--------------------------ATCATTTACTGTAAAATCCCAAAAAATT-------------
s cb4.chrX              9695264 105 + 21540570 CG-----CACAGACCGGGTCTGGCGGACAAGACTCTTGAACGTTTCCTTCTCTCTGTTTTTCCACGTCAAGAgattgggatactgtag-----caaGAGCTGATCCAGAAAAAAT
i cb4.chrX              C 0 I 134
s caeRem4.Crem_Contig0  1353585  76 -  4500979 CG-----CAC--ATCGGGTCT---CGACAAG-CTCTTGAACAATTCTTTGCTCTTGACT---------------ATGGTGTACTGTAA-----CAACACTTGTTTTT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   101943  61 +   386604 CG-----CAC--AACGGGTCT---CGACAAG-CTCTTGAAGAATTCTTTGCTCTTAAC----------------ATGGTATACTGTAA---------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640684  59 +  4147112 CG-----CAG--AGCGGGTCC---CGACAAg-ctcttgaaaaattctttgcTCTTAAC----------------ATGGGGTACTGT-----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317348 533 -   375229 I

a score=-16179.000000
s ce10.chrX             4402822 108 + 17718866 CTAA-ACGCCTGTCAGACAATTTTTTTGACAAACA----AGTATTGTGTAACATAGTA----------------CAGCTCATTTCAAAATGCATTAACCTTTCCACCCCCGGCTCCAC-------CTCCTCAAACT
s caeRem4.Crem_Contig0  1353661  97 -  4500979 -TCACACTTCTATT-----TTTGTCTTGTCCAAAG----AGTCCAATccaatttcctc-tttct-----tccatttcccAATTGGGT-------------TTTTGGTA---GAATCAG-------GAAacgaaaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102004 124 +   386604 --CA-AGtcgtgtt-----tttcttttcccacACTTTTCACCCCCTCCTGACGTCATTCGTTCTGAATAATCCTTGCctaatttgaaaatgcatAGAAC-TTTTACAC---TTTTGAGATCGCCCCCACCCAAATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640743 100 +  4147112 -----ATTTCTGTC-----TTTCAGATTACACACGT---ACTTAACTATCACGTCATT-ATTCTTCAT-ATTGTAGTTTGATTGGAGAACGGATTAAACGTTCTGAAT---GTTTCAG------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317348 533 -   375229 I
e cb4.chrX              9695369 134 + 21540570 I

a score=-12313.000000
s ce10.chrX             4402930 39 + 17718866 TCA-------------CAAAATTTGGTC---TAATCCCC-------------ACTTTTTGTTCCAAAA
s cb4.chrX              9695503 68 + 21540570 TCACGAACTCAACCTACGTCATTTAGTTTCTGGTCTTCCTAATCTCTACCTCTTTTTGTATTCATGAG
i cb4.chrX              I 134 I 18
s caeRem4.Crem_Contig0  1353758 55 -  4500979 ttgaaaaattgac---cgTAATTC-GTCATAGGTACCTCCAAT---------TTTCCCtgttcaaaaa
i caeRem4.Crem_Contig0  C 0 I 102
s caeSp111.Scaffold622   102128 27 +   386604 taataataatga----aataaTCTGGTT---GAT----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640843 34 +  4147112 ------------------TAATCTGGTt---gatctttc-------------tctctctactctatca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317348 533 -   375229 I

a score=-14274.000000
s ce10.chrX             4402969  78 + 17718866 CGTTTCTCGTCTCC---------------------------------------------------TTCAATATTAATATC-CACTTCTTTATC----------------ATTTTTCTTTTTTTCCTTTTGTT--CCGAGAGATTAGC-C--------
s cb4.chrX              9695589 106 + 21540570 TAATCCTCCTCTCC----------------------------AGATTTGTTTCca----------ccctctctttttttcacacttctatttttagaattgattcatcccaatttttgttttttttttt-----tcaa------aat-tataggtC-
i cb4.chrX              I 18 I 9
s caeSp111.Scaffold622   102155  74 +   386604 --TGTCTCAATTTC------------------------------ACCTGA----------------------------------TTCAATATT----------------CATTCTCTATACTTCATCATGTCCGGCAGGTGACCAAT-TGTAGAACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2640877 135 +  4147112 actttttcatttcctattctttgaaaattaacaACATCTCGTTAATCTGATCCAAGTATCAATTTCCCTAAATCTTATTC-CAATCCAATATT----------------AATTCATTGTACTTCATCAT-----TCGCTTGACCAATGTTCCGAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317348 533 -   375229 I
e caeRem4.Crem_Contig0  1353813 102 -  4500979 I

a score=-26334.000000
s ce10.chrX             4403047 148 + 17718866 AGAA-CGCTATT-CCAATCCATCATT---CCAAATGTTGCACATACTGCACTTTA-----CCTTTTCGCAGCTT-------CTTGACAGATCTATTGCTTTTCAGATTTTAAAATATTCAACCTTTTGACGG-----------------------CT------------------------AACCTGTCTGAAATCG---CATTTGACGATGGAA------------
s cb4.chrX              9695704 177 + 21540570 AAAA-CGGACTCACCAATTATTCTCGAACCCAAATCGGG----TACCCCGCTTTGACAGATTTCCattaaattctaaatttttcggCCTATTT----------CAAGGTGT--TCATTTTGTCCTCTGAGTG------CTGTCTCCTTCGTCCAAAT------GATGGATCCACCATTGG-----------GTACTAGtccgattttcaatttat---cg-------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1353915 189 -  4500979 AAGA-CGACCTT-CCAAT-----TCGTCATTATATGTGT----TGTCAcacctct-----ttttcttccaatttccgttttttcaacatCTCT----------CAATTCTCAATCATTTTGCCGTTTGTAGGGATCCCCTGCTTCCACCGTACCTGTCGATTGGATGGAAATGCCTTCGGAATCATACCTCGAACCGGACTACTTTGTGGGTGAT------------
i caeRem4.Crem_Contig0  I 102 C 0
s caeSp111.Scaffold622   102229 171 +   386604 CAAA-AGTCCAT-TCTATCAATCACTTCCCT-------------------CTTTA-----CCTTTCTTGAACTC-------ACTGAgagattt--------tctcattttgaaatatttcactttttaaagG--TGATACTTATTTGTCGAACACCG------GATGGAGACGGCTTCGGAAAGCTTCCTAGAGCCTGACTATTTCATGACGGACATGCA-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641012 176 +  4147112 AAAATAGCTCTT-TCAATCATTCATGTAACc-------------------cttta-------tttcttcttttc------gactGATCCATTT----------AAATATTAAATTATTCAACCTTTTGAGGG--TGACCCGTATTTGTTCAACGACT------GATGGCGTCTGCTGTCGAGAGCTATCTCGAATCTGATTATTTCATTGCGGAAACGCACACGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317348 533 -   375229 I

a score=30651.000000
s ce10.chrX             4403195 66 + 17718866 AGCGACT------CATC---AAACTACACACTGTGTGATGACACGTCGCAAGTTCGGATTGCGTTTTTCAGGTGA
s cb4.chrX              9695881 69 + 21540570 ATCAATG------ACACCTTCAATGCTTCCGCTTGCGAAGATGTCTCTGAATTGCGAATTGCTTTCATCAGGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354104 66 -  4500979 GTGAATG------CTAC---CAACTTCACACTCTGCGACGATACTTCCGAACTTCGTATCGCTTTCATCAGGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102400 61 +   386604 ATCAGCA--------------AATGATTCGCTCTGTGATGATACTTCACAAGTTCGTATTGCTTTCATCAGGTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641188 72 +  4147112 ACCAGCGGGCTCCTGGC---CAATGATTCTCTCTGTGATGACACGTCTCAAGCTCGTATCGCTTTCATCAGGTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  317881 66 -   375229 AACAACA------CGTC---AAGCTATTCCCTCTGCGATGACACGTCACAAGTTCGCATTGCATTTATCAGgtaa
i caeJap4.Scaffold17084 I 533 I 34

a score=-3757.000000
s ce10.chrX             4403261 21 + 17718866 GACGT--------TTGAAAAAAAAAACTC
s cb4.chrX              9695950 18 + 21540570 GCCAA-----------TAAAAAGAGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354170 18 -  4500979 GTCAA-----------TCTAGAGTGTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102461 20 +   386604 GACAC---------TTTCAAATTAGGTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641260 29 +  4147112 GatacttttatgtttttcaaacgGGTTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  317947 34 -   375229 I

a score=17092.000000
s ce10.chrX             4403282 136 + 17718866 T--------------------------TGCACTTGTACTT--------AACAAAACTTTAGT--TTTCACTT------------------TTTTCTGTTTTATGCGTGCAAAAAAAACCACATCACGCGTTAAG--TTTATGTAGAA-GCCGATCAACTCGCTTGATAACTTTTTCC--------------TTTTGGTTTCATATTT
s cb4.chrX              9695968 140 + 21540570 -------------------TT-ATGT-TCCCGATGTACTT-----TTTAAAAGATCTCGGGT--TCTCTTTT------------------TCGTTGTTTGTCTGCA-------AAAAACACATCACGCGAGAAGTATATATGTATCTGACTGATCAACTcctttgataacttttttc--------------gcgCAGTTTCATATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354188 137 -  4500979 A-------------TGGAATT-GTGTGTTCCGCTGTACTT-----TCTAAAAGATGCTgggt--ttctttct------------------------tttttttgca------gaagaaGACATCACGCGTGAGT--TTTATGTAGCTGCCTGATCAGTATGCTTGATAACTTCTTTT-----------------CCCTTTCATATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102481 120 +   386604 T------------------------TGTTATTTTGTACTT-----------ATTTCTAAAGTACTGggtttt-----------------------gcttttttgc--------aaaaaagcATCACGCGTGAAG--GGTATGTAGCC-ACTGATCAACCAGcttgataactttttt------------------ccgtttcataTCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641289 148 +  4147112 TGATAGGTCCCTGATAGAATC-GTGTGTTCCTTTGTACTT-----TCAAAAAGATGTGAagt--tatgtttc-----------------------ttttttctgc--------aaaaaagcaTCACGCGTGAAG--TATATGTACCC-ACTGATCAACCGGCATGATAACTTTTTTG-----------------CCGTTTCATATCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  317981 187 -   375229 -------TAGTCGTCAtaattaatatatttttttgttcctcTTCTTCCAAATTGTTTCCATT--TCCACTTTAGCAGGGGGCAAATCTAGTACTTTTATCTATGC--------AAAACAGAAGGAAGAGTGAAG--TGTATATGTTT-CTTGATCAACGCGCCTGataatttttccgttttttgcactctttttttttttaatactt
i caeJap4.Scaffold17084 I 34 I 232

a score=24843.000000
s ce10.chrX             4403418 229 + 17718866 ------------------------GG---------TCGTGTCCGGCGGGAGGGGAAGAAATGAACCC-TCAACTAATCCATCGAAACATCCGGGGTGGCCGGCGGCAGTGAAAGATATCGTCCCAAAAGGAGCGCGAGAAATTAGTTATCCTTTGTTTGGACGCCGTCC----TCGTCGCC----AGAAATGCCC--ATAC--GTGT--------TGACGAAAATTTATGGG--AGATGAATGGAGATAC-----------GCGGAG-TC----------------AGGGTGTCT---------------------------------CT-------------------TTTTG--AATTCAAGAAT
s cb4.chrX              9696108 274 + 21540570 TTTTCTCCTTTGCCAGTGTCTGTGGGGActcatttc-------------aaaatcaaaa------------actaatcCATCTCTATATCC------ACCAGGG---------------GTCACAAAAGGA--ACGGGAAATTAGTTATCCTTTGTTTGTATCCCATTC-CTGGCGACACG----A-AAATGTCTGGATAC--GTATGAAATACGTGTACAAAATTTAtggg--ggaagaaaaaaaaagttgc--------ggAGCG-ATAAACCTTTAGTCCCACAGGCA---------------AATCTTAATCCggaaa-----------aactatattttttgtcGAGAAGCAATTTCCGGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354325 288 -  4500979 ------------------------GGCTTTCagtca-------------aagaaaaaaagtcaatCCCGCTACTAATCCATCCTCACGTCCGGGGTGGCCAGGG-----GTGGCATATCGTCCCAAAAGGA--ACAAGAAATTAGTTTTCCTTTGTTTGGACGACATCC-C--GCGTCCCA----AGAAACGTCT--ATAC--GTGT--------TGACGAAAATTTATGGG--AAATGGATGTAGCTGCTATTGTTGGTGGTAGTGAATGTGCTTCGAATGTTTAAGGTG----------TGATCAAACGCCATGCTGAAATCCC--CCGCTAACTTTTGATTCAATCCATCA--AATTTCCGGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102601 295 +   386604 ------------------------GGCTACCAGACGCGTGTCGGAGTGGGAGATAGAGGATGAACCCTCTAACTAATCCATCCAAACATCCGGGGTGGCCAGCG------TGAGATATCGTCCCGAAAGGA--ACAAGAAATTAGTTATCCTTTGTTTGGACGCCGTCCTCCGGCGTCTCC------AAATGTCCATACAC--GTGT--------TGACGAAAATTTATGGG--AGATGGGTGTAGATACTCG--------TATCCG-AC-------GTATGCGTAGGGGAGTCTGCATCACGATGAAACGTCATGCTGAAATCTTTCCC---AACATCTGAttaattct-tga--aatttccgGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641437 285 +  4147112 ------------------------GGCAACTAGCCTTATGTC-------GAGGGAGAGGATGAACCC-ATAGCTAATCCATGCTAACATCCGGGGTGGCA-----------GAGATAACGTcccaaaaaga--acaagaaattaGTTATCCTTTGTTTGGGCGACGTGT----GCGTCCCCCACAAAAAATGCCCATACACGTGTGT--------TGACGAAAATTTATGGGTAGGATGGCTGGAGCTA------------GAAACG-AC--ACTTTGGATATGTTAGGCTGTCT---TCACGATCAAACGTTAAACTAAACCCAT--CC---AAGACAAGATTTAATCTGTTG--GATTTCCGGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318168 232 -   375229 I

a score=297.000000
s ce10.chrX             4403647 70 + 17718866 CTGGAAATTT---------GAAAATGAACTCTTCCTGGTTGCGCGCGGTCTCACGGTCTCACGGTCTCAACTTTTGTCC
s cb4.chrX              9696382 58 + 21540570 GCGGAAATCATGTTGAGAGATAAGCGAACTCTTCC--GT-GCTGTT------------------TCCtgagtttttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354613 55 -  4500979 CCGGAAATTTAGT------GTGAACGAACTCTTCCTGGTGGCtttc------------------ttctgcttttttccC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102896 42 +   386604 CCGGAAATTCACT-----GGCAGCCGAACTCTTCCTG--------------------------------CTTTTTTCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641722 53 +  4147112 CAGGAAATTTATT-----GAGAAGCGAACTCTTCCTGGTGGCG---------------------TGCTTTTTCTTCGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318400 48 -   375229 CCGGAAGTCCTTA-----------AGAACTCTTTTCACTCTCTT--------------------TGACAAGTTTTATCC
i caeJap4.Scaffold17084 I 232 I 46

a score=4818.000000
s ce10.chrX             4403717 32 + 17718866 A----TTGTTGTTACA-------------AGACGTGTA-GCCCACCGGAG
s cb4.chrX              9696440 42 + 21540570 atgtctagCTGTTACAT------GT-GAGAGATGTGAG-GGGCACCGGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354668 43 -  4500979 A----TAGATGTTACATGCTTTGGT-GGGAGACATGGG-GGG-ACCGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102938 44 +   386604 A-----CGTTGTTACAAGTATTAGTGGGGAGACATAGC-CCGCACCGGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641775 44 +  4147112 A-----TGTTGTTACAAGTATTAGT-GGGAGACATGCCTCCGGACCGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318448 46 -   375229 I

a score=127743.000000
s ce10.chrX             4403749 139 + 17718866 AGAGTTTAATTATATGCAAATGCGAAGTGCA-CCATCAAATAAAGAATTCGGTCATTCAAAGGAGGGGCGC------ATTGGCGAAAAAA-----ACGGAGAGGAAATGTTTTGTGCATCC-TTTCCGATGGGATCAATGAGCGAAAGGCTT
s cb4.chrX              9696482 151 + 21540570 AAAGTTTAATTATATGCAAATGCGAAGTGCA-CCATCAAATGAAGAATTCGGTCATTCAAAGGAGGAGCACACATTggtcgagaaaaaaattttgagaggaaGGAAATGTTTTGTGCCTCCTTTTCCGATGGGATCAATGAGCGACAGGTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1354711 135 -  4500979 AGAGTTTAATTATATGCAAATGCGAAGTGCA-CcatcaaatgaaaaattcggTCATTCAAAAGAGGGGCAC------GTTggcaaaaaaa---------ggaaaaaatgttttgtgcGGCC-TTTCCGATGAGATCAATGAGCGAAAGGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   102982 136 +   386604 AGAGTTTAATTATATGCAAATGCGGAGTGCA-CCatcaaatgaagaattcgGTCATTCAAAGGAGGGGCAC------GTTGgcaaaaaag--------gagaggaaATGTTTTGTGCGCCC-TTTCCGATGGGATCAATGAGCGAAAGGTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641819 136 +  4147112 AGAGTTTAATTATATGCAAATGCGGAGTGCA-CCATCAAATGAAGAATTCGGTCATTCAAAGGAGGGGCAC------GTTGGcaaagaaa--------gaaaggaaacgTTTTGTGCGCCC-TTTCCGATGGGATCAATGAGCGAAAGGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318494 134 -   375229 AGGGTTTAATTATATGCAAATGCAAAGTCCACCCAACAAATGAAGAATTCGGTCATTGGTAgggag-----------gaagaaaaagaaa-----caaataaaacaattcTTTGTACTCCC--ATATAACAGGATCAATGAGCGAAATGTTT
i caeJap4.Scaffold17084 I 46 I 185

a score=17743.000000
s ce10.chrX             4403888 60 + 17718866 GGGGGCTCGGGC---------GAAGACAAGCCTATTTGCAACATTTAGATGGAATAAGAAGGAGAAGAA-------
s cb4.chrX              9696633 59 + 21540570 -GAAAC---------AGAAAATGGAACAAATCAATTTGCAACATTTAGAttggaaagaa-gagagaaaaa------
i cb4.chrX              C 0 I 301
s caeRem4.Crem_Contig0  1354846 66 -  4500979 -GAGGTCCGGt---gaaaaaagggaacaaaCCAATTTGCAACATTTAGATCGGAGAGAGTGGGAGGCAAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   103118 74 +   386604 GGGGGCCTGGgc--ggaaaaagagaacaagcCAATTTGCAACATTTAGATAGAAGAGGCAAAGGAAgacattcgaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2641955 75 +  4147112 -GGGGCCAGGGCATGGAAAAAGGGAACAAGCCAATTTGCAACATTTAGATGGACGTAACCGGTGAAGAcattccaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I

a score=3813.000000
s ce10.chrX             4403948 83 + 17718866 AGCACAACTGAATTACACTCCTTCCGAACGAGGCTTGTCA---CACGA---------------AAAGGTTG--GATGA--TGTGTTGATAACCCTTCGGGGAGCT----
s caeRem4.Crem_Contig0  1354912 88 -  4500979 --------------AGT----TTCCAAATCTAGATTCTCAATTCAGAATTCGCTTCCAATTAATAAGGTTACAGacca--aaagttgataactCTACTGGGAGC-AACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   103192 85 +   386604 aaaagaaccgAATTAGA----CTCTGAACGAGGATTGTCA---CAGGATTTG-----------TAAGGTTACTCATCA--TCTGTTGATACGTCTTCTGGGAGTT----
i caeSp111.Scaffold622  C 0 I 28
s caePb3.Scfld02_0      2642030 86 +  4147112 a----aactgaattagaGTGGGTCCGAAGGAGACAAGTCA---CAGGATTTT-----------TGAGGTTACTCATGAAGTGTGATGATAACTCTTCAGGGAGC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I

a score=-974.000000
s ce10.chrX             4404031 21 + 17718866 CTTAATGTTTG---------TCGAGTTGTT---
s caeRem4.Crem_Contig0  1355000 25 -  4500979 --------TTGAAACGGAGTTTGAGCAGCTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2642116 28 +  4147112 ---AACTTTTGAAATGGAGTTTGAACTAGTA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103277 28 +   386604 I

a score=19633.000000
s ce10.chrX             4404052 75 + 17718866 TGAACACT-----------------GGACACTTATGGTTCTTATTTAAATATTCAAAGACTTATTGGAG-ATGTTGCAATGTTTGAGTTGGAG
s caeRem4.Crem_Contig0  1355025 82 -  4500979 CGAGCACTAAAACATAAAACGAG--GAACATTTATGGTCT---TTTGAATATTCTAGAACTT------GAGTGTTGCAAAGTTTGAGTTTGAG
i caeRem4.Crem_Contig0  C 0 I 232
s caeSp111.Scaffold622   103305 85 +   386604 CGACCACTAAgacatgaaa-aagaagaacatttATGGTCC---TTTGAATATTCTAGGACTTTTTC----ATGTTGCAGAGTCAGAGTTTGGG
i caeSp111.Scaffold622  I 28 C 0
s caePb3.Scfld02_0      2642144 90 +  4147112 TGAGCACTAGAACAAGAAACGGGGAGAACATTTATGATCC---TATGAATATTCTAGgactttttcaagaaagttgCAGAGTTTGAGTTTGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I

a score=583.000000
s ce10.chrX             4404127 6 + 17718866 CATTAG
s caeSp111.Scaffold622   103390 6 +   386604 TTTGAG
i caeSp111.Scaffold622  C 0 I 97
s caePb3.Scfld02_0      2642234 6 +  4147112 TTTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I
e caeRem4.Crem_Contig0  1355107 232 -  4500979 I

a score=-830.000000
s ce10.chrX             4404133 72 + 17718866 AAATACTAAATCTCTTCAGTCCAATAGGGGTTTTTTTCGACCTTAAGAAGTATGCCAAAAAATGGGGTCTCT
s caePb3.Scfld02_0      2642240 36 +  4147112 A-----------------------------TTTAGTTCgagc--aaaaa-----ctaaaaagagaGAACTGT
i caePb3.Scfld02_0      C 0 I 52
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103396 97 +   386604 I
e caeRem4.Crem_Contig0  1355107 232 -  4500979 I

a score=0.000000
s ce10.chrX             4404205 75 + 17718866 TCATATACttgctcttttatacctaaaatgaccaaacactgtcggaggttgtaataagacgtttagaaaatttct
e caePb3.Scfld02_0      2642276 52 +  4147112 I
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103396 97 +   386604 I
e caeRem4.Crem_Contig0  1355107 232 -  4500979 I

a score=-4399.000000
s ce10.chrX             4404280 480 + 17718866 caaaaacaaagttatggtggttTTAAGTTTAAAAAAAAGATATTTTCAAATAATTTCTAAAATTTCGCCAACTTGACCAAGTCCGAATTAGGAAGTTAGATTCTATTTGATTATAATTTTTCAATTCATATTTTGGTAATTTGTTGTGCGTTATTTCGATGACACATATGCTTTTTCCGTC-GATGTGTTACAA-----TTTTGTAAACTCATCACCCAAAAATATACCTAAACGTATGTATTCAAGATCAGTATTTAAATTTTTTGAAAAGttccgtccattgccacattgacaagttggcatagtttgtgattttagctgaaaatacggtattttggtaaaattttcagaacgtctcattacaaaattcggcagttttgggtaattttagctgaaaagcaaagtatcagacttgggtactccacctttCAAACCTTGACTATAATCAGTCCGGTACTTCAACAACTCAACAAAGATACTTAACA
s caePb3.Scfld02_0      2642328 263 +  4147112 CAAACACGTGGTTGtgg---------------------gaaattttgaagtg---tcaaaagtt----catttcatGCAAGTATAATGCAGAGG---------TAGTCGGCTAGAGTGTTTCTATT--------------------------GTTTC----------------TTTCTGTTTGATGAGTTGCAAACAAGGTTCATAAAATTG----------ATAAGCCTGAACGCTGAAATGCAAACTCA------AAGTTTTGAGGAGATATCAATCTCTTGCC---------------CGTTTCTCGTAGTTA------------------------AAACTTCTCGGGGCATT-------------------------GTAATTTT--------------------------------CCACTTCCCA--------------TCACTTTTATCTTCTTACAACT------------------
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold17084  318628 185 -   375229 I
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103396  97 +   386604 I
e caeRem4.Crem_Contig0  1355107 232 -  4500979 I

a score=-1534.000000
s ce10.chrX             4404760 37 + 17718866 ATTTATAGGTTTAACATATTGACATTTTTCTATTCTG
s caePb3.Scfld02_0      2642591 14 +  4147112 -----------------------ACTCTTGCATTTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318813 32 -   375229 ATTTAGATGTTTAAAACCATGAAGCTACCCAA-----
i caeJap4.Scaffold17084 I 185 C 0
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103396 97 +   386604 I
e caeRem4.Crem_Contig0  1355107 232 -  4500979 I

a score=843.000000
s ce10.chrX             4404797 5 + 17718866 CTGCT
s caeRem4.Crem_Contig0  1355339 5 -  4500979 CTTCT
i caeRem4.Crem_Contig0  I 232 I 1
s caePb3.Scfld02_0      2642605 5 +  4147112 CTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318845 5 -   375229 CCGCC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9696692 301 + 21540570 I
e caeSp111.Scaffold622   103396 97 +   386604 I

a score=10522.000000
s ce10.chrX             4404802 77 + 17718866 ---AACTTTCCTAACTTTTTCTTAC--------------TTTCGCTTGATCT-----GTGTTAAGCTACT-AGGCCTAAAGTGTCCTCATGTCATCCATT
s caeRem4.Crem_Contig0  1355345 96 -  4500979 ---AACTTCCTCACTTTTTACTTACTTCCTTGGTGGCCATTTCGCTATGCCCACTGCTCGTTAAGCTACC-GGGCCTAACATGTCTTCAGATCATTCATT
i caeRem4.Crem_Contig0  I 1 I 1
s caeSp111.Scaffold622   103493 90 +   386604 ---aacattttcattttt--ctttctcctccacttgaaattt--tcaaatcttgcGATTTTTAAGCTACC-AGGCCTAACATGTC--CATATCATCCATT
i caeSp111.Scaffold622  I 97 C 0
s caePb3.Scfld02_0      2642610 53 +  4147112 -----AGTTTCCACTAT----------------------------------------TTTTTAAGCTACAGAAGCCTAAAATGTC--CATATCATCCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318850 73 -   375229 CACTCCACTCTTGTTTCTTATTTTCTCCTCT--------------------------AACTTAAGCTACA-GGGCCTAACATGTCTCCATATCATCCACT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9696692 301 + 21540570 I

a score=177915.000000
s ce10.chrX             4404879 682 + 17718866  
s cb4.chrX              9696993 724 + 21540570  
i cb4.chrX              I 301 C 0
s caeRem4.Crem_Contig0  1355442 679 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   103583 678 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2642663 652 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  318923 657 -   375229  
i caeJap4.Scaffold17084 C 0 I 12

a score=-7477.000000
s ce10.chrX             4405561 27 + 17718866 AGACTGCCACGAGCCAGCATAAAAGAA
s cb4.chrX              9697717 12 + 21540570 AGATTTCGaagt---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1356121 15 -  4500979 GGGCCCAAAAACAGG------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   104261 25 +   386604 AGACCAACCCGAGGGA--CTAGCCAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643315 15 +  4147112 Ggaccaaaatgaaga------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  319580 12 -   375229 I

a score=133249.000000
s ce10.chrX             4405588 163 + 17718866 GATGAAACCAATTTT-CAGCGTTTCTCTATAACTTTGTGATGGACAGCAATGTGGTGACGCTGGTTATGAGTCGGATCGTCCAGCTTTCGATTCCATACACGCTCATCGCCAACTCGGCAGAAAAGCTCACTATGATTCTGGGAATTGACTGTGAAAGCCAGTA
s cb4.chrX              9697729 156 + 21540570 -------ttccattttcagctttcctATACGATTTTGTAATGGACACCAATGTGATGTCATTGGTTATGAGTCGTGTCGTCCAATTGTCCATTCCATATACCCTTATTGCCAATTCTCTCGAAAAACTGACTATGATCCTGGGATACGATTGTGAGAGCAGGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1356136 164 -  4500979 AATTAAACGACTTTTACAGCATTGCTATACAATTTCGTTATGGACAGCAATGTGATCTCATTAGTGATGAGTCGAATCGTTCAATTAGCAATTCCATATACTCTCATTGCAAATTCTGCCGAGAAGCTGACCATGATCTTGGGATTCGATTGCGAGAGCAAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   104286 162 +   386604 AATTCAACGAGTTTT--AGCCTTTCTATACAATTTTGTCATGGACAGCAATGTTGTAACACTGGTGATGAGTCGGATCGTTCAGCTTTCCATTCCATACACTCTCATTGCAAATTCAGCTGAGAAGCTGACTATGATCCTGGGATTTGACTGTGAAAGCAAGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643330 163 +  4147112 aattaaaCGTTTTTT-CAGCGTTCCTTTACGATTTCATTATGGACAGCAATGTGATCTCATTGGTGATGAGTCGGATCGTTCAACTCTCTATTCCATATACCCTCATTGCAAATTCTGCCGAGAAACTGGCCATGATCCTGGGATACGACTGTGAGAGCAAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  319592 163 -   375229 tatgtCTCAAACTTT-TAGCCTTCCTCTACAACTTTGTCATGGACAGCAATGTGGTGACTCTGGTGATGAGTCGGATCGTTCAACTCTCCATTCCTTATACACTCATCGCTAACTCGGCGGAAAAACTTGCGATGATTTTGGGAAAAGATTGTGAGAGCCAGTA
i caeJap4.Scaffold17084 I 12 I 148

a score=-1440.000000
s ce10.chrX             4405751 4 + 17718866 AGCT----
s caeRem4.Crem_Contig0  1356300 4 -  4500979 TGTT----
i caeRem4.Crem_Contig0  C 0 I 308
s caeSp111.Scaffold622   104448 8 +   386604 TGTTTCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643493 8 +  4147112 CGTGCCCt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697885 0 + 21540570 C

a score=-2463.000000
s ce10.chrX             4405755 17 + 17718866 --------------ATTCTGGAAAAAAAACA--
s cb4.chrX              9697885 16 + 21540570 -----------------Ttgtatcaaaaaaata
i cb4.chrX              C 0 I 451
s caeSp111.Scaffold622   104456 21 +   386604 ATGTA----------TTCTGAAATGGGATGA--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643501 31 +  4147112 atgaatttctaaaatttccgaaatgaaaCGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  319755 148 -   375229 I
e caeRem4.Crem_Contig0  1356304 308 -  4500979 I

a score=-535.000000
s ce10.chrX             4405772 6 + 17718866 AACATT
s caeSp111.Scaffold622   104477 6 +   386604 CACATT
i caeSp111.Scaffold622  C 0 I 260
s caePb3.Scfld02_0      2643532 4 +  4147112 AATG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I
e caeRem4.Crem_Contig0  1356304 308 -  4500979 I

a score=660.000000
s ce10.chrX             4405778 73 + 17718866 TCAAAT-------------CTTTCTATCAAAT---TTCTAATACCATTCCTCTTCTCAGACAGTGGATTAGTTGGAAGGAGGATTAGAA
s caePb3.Scfld02_0      2643536 87 +  4147112 TGAAAGAGGGTGGTCTTGACTTATTGtgaaatgaattctg--aatatGTCTCttcatagaaaatgaaatagggAGAGGGGGTCTCagaa
i caePb3.Scfld02_0      C 0 I 168
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I
e caeSp111.Scaffold622   104483 260 +   386604 I
e caeRem4.Crem_Contig0  1356304 308 -  4500979 I

a score=0.000000
s ce10.chrX             4405851 674 + 17718866  
e caePb3.Scfld02_0      2643623 168 +  4147112 I
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I
e caeSp111.Scaffold622   104483 260 +   386604 I
e caeRem4.Crem_Contig0  1356304 308 -  4500979 I

a score=191.000000
s ce10.chrX             4406525 2 + 17718866 TC
s caeSp111.Scaffold622   104743 2 +   386604 TC
i caeSp111.Scaffold622  I 260 C 0
e caePb3.Scfld02_0      2643623 168 +  4147112 I
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I
e caeRem4.Crem_Contig0  1356304 308 -  4500979 I

a score=-218.000000
s ce10.chrX             4406527 4 + 17718866 -AGGA
s caeRem4.Crem_Contig0  1356612 4 -  4500979 -AGGA
i caeRem4.Crem_Contig0  I 308 C 0
s caeSp111.Scaffold622   104745 4 +   386604 TAGA-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2643623 168 +  4147112 I
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I

a score=194.000000
s ce10.chrX             4406531 3 + 17718866 AAT
s caeRem4.Crem_Contig0  1356616 3 -  4500979 TAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   104749 3 +   386604 TAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643791 3 +  4147112 AAG
i caePb3.Scfld02_0      I 168 C 0
e caeJap4.Scaffold17084  319755 148 -   375229 I
e cb4.chrX              9697901 451 + 21540570 I

a score=20740.000000
s ce10.chrX             4406534 113 + 17718866 CCAGTAATAAAATCAAAGGGTGGGCGCA--GTAGCAACTGTCCTCTACACCCAATAAAACTACATCCCAGCTATG---TAGCTCAAAAGACGC-ATTTTATCACC--GACATCGCCA-ATCG---------
s caeRem4.Crem_Contig0  1356619  88 -  4500979 CCTGTAATAAAACGGAAGGGTGGGCGCA--GTAACAACTGTCATTTACACTCAATAA---------------ACG---TTGCTCAAAACCCA---TTTTACAACC---------CGT-ATT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   104752  97 +   386604 CCTGTAATAAAACGAAAGGGTGGGCGCA--ATAACAACTGTCACTTGCACCCAATAA---------------ACG---CTGCACAAAACAAG---TTTTATAGCT--ACATCCCCTCaatca---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643794  99 +  4147112 CCTGTAATAAAACAGAAGGGTGGGCGAAGGGTAACAACTGCTTTTTGCACCCAATAA---------------TTG---CCGCTCAAAACACGT--TTTTATAGCC--TCAAACACtc-atta---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  319903 111 -   375229 CCTGTAATAAAA--AGCGGGCACGCACG--CGCACAACTGCCGATTGCACCTAATAA---------------ACTTGCTCGCTTCGAGCAAGCAAGTTTATTACCTTGCAAAATCCT-ATGACTCAActaa
i caeJap4.Scaffold17084 I 148 C 0
e cb4.chrX              9697901 451 + 21540570 I

a score=94730.000000
s ce10.chrX             4406647 223 + 17718866 TTTCAGATTCTCATTGCGCTTGCGTATAGGGGTCATCTTGCTGCTTCTCGGAACTGCAACATCGCTGAGAATAAACGGATTGTATTTGTATTTTATTGATGAAGATGAGAATTGCGATTTCTACCATAGAAAGTGGCTAAGCTCCCACCAAGAGGAACAGGCAAAATGGATTCATTTTGAAAATGTGTTAACTGTAA--GAAT---------------TTCGATAATGACACACACACAA
s cb4.chrX              9698352 222 + 21540570 tttcagattctctttGTATGTTCGCATCGGGATCATCATGACACTGTTTGGAACAATGACGGCATTACGGTtgaactgtttcaaaatgtttttcattcaCGTCGAGCCACTTTGCGAATATTTCCATAGAAAATGGCTTAGCTCCGATGCTGAAGAAGTGATCCGATGGAAAGATTTCGAACATAATTTAACTGTAA--GTTT---------------GTT-CAATTCAGTCTCAGCTAA
i cb4.chrX              I 451 C 0
s caeRem4.Crem_Contig0  1356707 217 -  4500979 TTCCAGATACTCTTTGCGTCTTCGTATCGGGGTCATAATTCTATTGTCGGCAACTGTAACGCTTTTACGGATCAATGGGCTCTACTTGTTCTATATCTTTGAGGATGACAACTGTGAATATTTCCACAGAAAATACTTGAGTTCACATCAAGAGGAAGTACAGAAATGGACTACTTTTGAGAACGTTCTTACGGTAA----------------------TC-CAACAGAATCAAAAATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   104849 235 +   386604 tttcagattctcaCTGCATCTTCGCGTCGGGGTCATTTTTGTATTGTTGGGGACTGCGACAGCATTGCGAATAAACGGACTCTActtattcttcatttttgaagatacCAATTGTGACtattttcatagaaaatggTTGAGTACGCATCCCGaggaacaagaaaaatggactacatttgaaaatgttctaaCTGTAAATGAAATAAGCAAGAGTTGGTATC-CTAATGATTctcat----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2643893 222 +  4147112 tttcagattttcgttGCGAGTCCGAATCTTGATCATCCTTCTATTGTTGTTAACAACGACATTATTGCGTATCAATGGAATGTTTCTACTCTTCATTCATGAGGACCCAGACTGCCCGTTTTTTCATAGGAAATGGCTGAGTAACTACCCAgaggaacaagaaaaatggagctATTTTGAGAGCACTTTGACTGTAA--GAAA---------------GTC-ATAATAAATTTCGGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  320014 223 -   375229 tttcagattttcacTACGTTTTCGAGTCGGGGTCATTGTTGCATTGTTAGGCACAGCGACGGCATTACGGATAAACGGACTGCACTTGTTTTTCATTGATGTCGACGagaaatgtgatttttttcacaaaaagtgGTTGAGTTCACATCCGGAGGAGCAAGCAAAGTGgacaacttttgaaaatgttctTACGgtgc-tgaaa---------------ata-aaaaagaaacccAAATAG
i caeJap4.Scaffold17084 C 0 I 26

a score=-4986.000000
s ce10.chrX             4406870 22 + 17718866 GCTAGTCTGAAATATTCAAAAA
s cb4.chrX              9698574 11 + 21540570 GAAATCTTCCA-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1356924 20 -  4500979 GGTTTCTTGAATAAT--GATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2644115 11 +  4147112 GCAAACCAATA-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320237 26 -   375229 I
e caeSp111.Scaffold622   105084  0 +   386604 C

a score=220326.000000
s ce10.chrX             4406892 228 + 17718866 TTGCAGTTCTTCCACACGTTCGTCTCATTCGTTTTGTTATGTGCACTTAACATTGTCGTCGTCGCCAAACTTCGCGTACAGCACCGAAAAACGCGCCGACAATCCACTTCTCCGGCTCAGCTGTTTTCGGTATACTTCAGAAATTTTCTGGGATCTAAATCAATCACGGTTTTGACGCCTGTCGG---CAACACCACTACGCAAACACTCGAGACTCGGGTACTTTGTTAA
s cb4.chrX              9698585 228 + 21540570 TTTCAGTTTGTTCACACCATCTTctccttccttcttcttcttttctgtaaCATTTACGTGGTGTACAAACTTCGTACGCAGCATCGCAGGACGCGCCGCCAGTCCACTTCGCCGGCTCAATTGTTTTCGGTatacttcagaaattttctgggATCTAAATCAATTACGGTCTTGACGCCAGTCGG---CAACTCTACCACGCAAACACTTGAAAATCGGGTACTTCGTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1356944 228 -  4500979 TTTTAGTTCTTCCACACTTTCGTTTCATTCGTTCTTCTCGTTGCGTTCAATATTGTCGTAGTGGCAAAACTACGTGTTCAACACCGCAGAACTCGCCGTCAATCCACTTCTCCGGCTCAACTGTTTTCGGTAtacttcagaaattttctggGATCTAAATCAATTACGGTCTTGACGCCAGTTGG---TAACACCGCCACGCAAACACTTGAAAATCGGGTACTTCGTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105084 227 +   386604 -ttcagtttttccacACTTTCGTCTCTTTCGTCCTTCTCTGCGCACTCAACATCGTCGTGGTTGCCAAACTTCGTGTACAACACCGGAAAACTCGTCGCCAATCGACGTCACCGGCTCAACTATTCTCGGTATacttcagaaattttttgggcCATAAATCAATTACGGTTTTGACGCCGGTTGG---CAACACCACCACGCAAACACTTGACAATCGGGTACTTCGTTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2644126 227 +  4147112 -TTTAGTTCTTCCACACGTTCGTCTCCTTCATTTTGCTATGCGCATTCAACATCTATGTTGTGATCAAACTCCGTGTTCAACACCGAAAAACTCGACGCCAATCTACTTCGCCGGCTCAACTGTTTTCGGTAtacttcagaaattttctgggTCATAAATCAATTACGGTTTTGACGCCAGTCGG---CAACACCACCACGCAAATACTTGACAATTCGGTACTTCGTTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  320263 231 -   375229 TTTCAGTTCTTCCACACATTCGTCTCCTTCGTCTTGCTCTGTGCGCTCAACATTGTTGTGGTTGCCAAACTGCGTGTTCAACACCGTAAAACACGTCGCCAGTCAACTTCACCGGCTCAGCTCTTCTCGGTATTCTTCAGAAATTTCTTGGGATCTGATTCGATTACGATTTTGACGCCAGTTAGCGCCAACACTACCTCGCAAACACTTGAAAATCGGGTACTTCGTTAA
i caeJap4.Scaffold17084 I 26 I 1029

a score=12102.000000
s ce10.chrX             4407120 277 + 17718866 GCAAGAT--ATGGTCTATGTGAAAAACAGC-------------------TTCTTTATTTTTTATTTTTTTGCTAAACGTCAGAGATTG----CGCTTTTTCGATAA---AATCGGAATACATTTTGGAACGCATGG------CATTTCGA------CAAAAATTCTTTTTTTT--------------TTCGAAAATTCGGACAATAGAT--------------CACG----AAAATGACCTCACCAGAA----AAAAAAACAGG---------AAGGGACACGAGGGAGAGAGAATA------GCATTTTTGCTTAAGGGCAAACCTATTTGAGTGGGAGAGCGATGGTAATTTAATCAATGAGAACA
s cb4.chrX              9698813 289 + 21540570 GCCAGATGAATGATATTTTGTGAAAACAGCTTTCCTTctgtttttcctattttttttctttccttccCTG-------GTT--AGACTATTTTCATACTAGTAAGAAGAGGAAC-------------AGGCGCACgg------taaaatat------gaaaaattt----ttctaaagtt--------ctcaaaaa----------------------------ttag----ttGATGATTTTATAGGAGGCTTagggaaacaaagaaaatgggacgagaaaaaaagaagaaagaaaaaaaaacagatttttgcTCAAGGGCAAACCTATTTGAGT-GGGTAGGAACCGTAATTTAATCAACAGAAACA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1357172 293 -  4500979 GCAAGAC--ATCGCCTATGTTGAAAACagctt-----------------ttttttatttcttcttcctt--------gTC--AGATTA----CGCCCCCGCAATGAGA-TATT-------------AATCGCATGG------TATTCCAG------TCaaaatttatacttttttaGTTACAGCTAACCCATGAAATC---CAATAGATCCTGTTTTAAATTCTTAGAGTATCAATGATTtcatagaag----aaaaaaacaaagaa------acaagGAAGGTggatgaaaagagaaaga--agatttTTGCTCAAGGGCAAACCTATTTGAGT-GGGCAGGAATGATAATTAAATCAACAGAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105311 242 +   386604 GCAAGAC--ATGGTTATGGTTGAAAACagc-------------------tttttctgtttttccttGTC--------TTC--TTGGCG----AGCCTTTTTAATAAGAAAACTAGGGAATTTT---GGAAGCATGCCATCCTGAAActag-----------atttttgtttttt---tt--------ct----------------------------------tggg----atAATGATTACATAGGAA----CAAAAAACACT---------AGGAAGA-----GGTCAAAGGC--------AGAATTTCGCTCAAGGGCATACTAACTTACAT--AAAAAGAATTGTAATTGAATCAGGAGAAAca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2644353 233 +  4147112 GCAAGAC--ATGGTTTTGGTTGAAAACAgc-------------------ttacttcttttttcttcctt--------gtc--AAACCG----CGTCTATCCAATAGGAAAACT-GAATACGTT---AGGAGCATGA------AAAATCAGTAGATCAAAGAATTTATAATAT------------------------------------------------------------TAATGACCCCATGATAA----Aacaaaggaag---------agaaagaaggtggatcaaaata--------agatttttgcTTAAGGGCAATCTTAGT---------GTGGGATGGTaattgaataaacaaaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320494 1029 -   375229 I

a score=-3721.000000
s ce10.chrX             4407397 11 + 17718866 ACATGTATTTT----------
s caeRem4.Crem_Contig0  1357465  2 -  4500979 ----------TC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105553 11 +   386604 ----------tcttgtttttt
i caeSp111.Scaffold622  C 0 I 77
s caePb3.Scfld02_0      2644586  3 +  4147112 ----------tat--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e cb4.chrX              9699102 19 + 21540570 I

a score=273.000000
s ce10.chrX             4407408 18 + 17718866 CA-TTTTCTGGATTTCAGT
s caeRem4.Crem_Contig0  1357467 15 -  4500979 ---TTTTCTGGATTG-AGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2644589 14 +  4147112 cagatttttggatt-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e cb4.chrX              9699102 19 + 21540570 I
e caeSp111.Scaffold622   105564 77 +   386604 I

a score=2362.000000
s ce10.chrX             4407426 10 + 17718866 GCAATAGGAA
s cb4.chrX              9699121 10 + 21540570 acaaaaaaaa
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0  1357482 10 -  4500979 GAAGAAGAAA
i caeRem4.Crem_Contig0  C 0 I 153
s caePb3.Scfld02_0      2644603 10 +  4147112 gcaacaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564 77 +   386604 I

a score=273.000000
s ce10.chrX             4407436 1 + 17718866 A
s cb4.chrX              9699131 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2644613 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 439
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564 77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=414.000000
s ce10.chrX             4407437 42 + 17718866 GCAAACAAGAAAGT-TTCATGAATGAGGGAA-----CAAATGAGGTTT
s cb4.chrX              9699132 48 + 21540570 acaagcgaaaaaacaTGCATCCTTGGGGGACACTCTCAAATGGAACTC
i cb4.chrX              C 0 I 250
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564 77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=0.000000
s ce10.chrX             4407479 204 + 17718866 AAAACATGTTTTTAATTTCTCATTGGTCCATTTGGCAATTTTCAAACCTGCAATTTTCCGGAATTTGCGATTTATGATTGAAAAAAAATTTTAATGGAAATTTTCAATTTTCAATTTTCAAAGTGGAAAATCAAACACACTTTGTGAATGAATTTAGAATTACCGGAAAAACTGAGGAAAATCTAGAAATGTGTATACAGTTGT
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e cb4.chrX              9699180 250 + 21540570 I
e caeSp111.Scaffold622   105564  77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=1076.000000
s ce10.chrX             4407683 18 + 17718866 ATACAAAAATATACAGTT
s cb4.chrX              9699430 18 + 21540570 atacaaGAGTATATAGAT
i cb4.chrX              I 250 I 286
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564 77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=0.000000
s ce10.chrX             4407701 213 + 17718866 GCTTAAAAGATTATCGACAAATTTAGCACTTTCCGTTTTCTGAAACTTTGCTAAATTGCCCCGATTTACCGATTTCTTACCGAATTTCCCAAAATTGTCAAATTTATTTACAATCGGTATGCCAAACTGGAATTAATTATCAACCGATCAGAAAAATCAATATCAGGCTCCGCCTCTTTCTGGGTTTTTTTTTTTTGCGTTTCTCAAGTATTT
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e cb4.chrX              9699448 286 + 21540570 I
e caeSp111.Scaffold622   105564  77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=-16.000000
s ce10.chrX             4407914 135 + 17718866 TGTTCTGAGTGAA-------------TTCTGTGGATCATTCTTTCTAATTCAACCGGGTAGAAAAACATTAACCAACATCTTACAAGTTATAATTTAATATAGGAACTTGAATAATTTTTTGTTGAAAAATATATAAACTTCTTG----------------AAT
s cb4.chrX              9699734 151 + 21540570 tgttttagATGCATTAGAAACAACATTTTCATAGACCACTCCTCC-----ACACGgcttccaaaaatctcaacgAAT------CTAATTAT--TTTAAtacacaatttttaaaacttcaatttcgaATAGTATTGAGATTGATTGGGAAAGCCGCCAcaaaaat
i cb4.chrX              I 286 C 0
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564  77 +   386604 I
e caeRem4.Crem_Contig0  1357492 153 -  4500979 I

a score=-155.000000
s ce10.chrX             4408049 1 + 17718866 A
s cb4.chrX              9699885 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1357645 1 -  4500979 A
i caeRem4.Crem_Contig0  I 153 C 0
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e caeSp111.Scaffold622   105564 77 +   386604 I

a score=-22127.000000
s ce10.chrX             4408050 342 + 17718866 CAGGGTGA----TGATGCACGTACTGATAACCAAGAATCCCAACA----GGAACCAATTC--------CCCCACCTGAAATGGTAACAAGTGTTATA-----TTGCAGTTATCATGATTTATAGTATAACCGTAGTATT-----------TTTGTTCTCCCACCTAGCAGCCCTCACTCACACACATATGGTTTTTTTAAA-------------TATAGTTTGC---TTTTGCTTCAAATGAT-----ATGAATATAGGCTGACGCtatt-----ttttatttatttattttGAATTTGAACTTCAGCTGG--------------------CTTTTGAAATGATTTTTTAA------TACTCAACAGCTTAAAGTTTTTATTTAGCACACTTTTACCAAGAATAAGAAGTTACTGAACAGATGAAT---------
s cb4.chrX              9699886 332 + 21540570 ctaggaaatgACCGAAACTCCAATTGAG-------------AACT----GAAAAaactccaattggaactccaattgaga----actGAAATACATAGATAGTcgt-gatatttttttt--ctagatagtCGTGATATT-----------------TGGTCATTTCCTAGTCCACAGT-------ACAGTGTTTCCGCAAA------ACAAGAATATACGCTTT---GTTTGGTTTT-----------ATCTTTGAAGGCTGATACTTCTATCtcttttaattatttttctc--gCTTCAATTCCCA--TTGACCCAATCCCCCGTCTTTTGCTTCAAAACCGTGTTTTTAGCCCTCCCATCTGTTgcgttcaattttttttttgcattcaaT----------------------AAAAATAGCAA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1357646 330 -  4500979 CAGGGTAA----CGAAGCACGTATTGAAA---------TGCAACA----AGAAGAAGTTC--------CCCAGATTGAGATGGTAACAAATCACATA-----TTGTAGATATCAAACTT--TTGTAGAGTCACTAGAAT---------------------------------CAC-----------CAATGTTTCT--------------------TGATTTCC---CTTTAGTTCtcacaatttcaaatgttcagaGAAATAGACTTTCAAACGCTTTGCTTGATTTTCTCATGCTGAAACCCTCACTTCTATCCGAGTTACCA------GCTTTGAACCCTTTAttcaaatctatttttctattgcttcaaattttggtttggCATTCACTCTTTTGCTTCTCTAGAGCTCTGATAAGTTGTAAACCTTAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105641 338 +   386604 CAGGGTGA----CAATGCACGCACTGAT-------------AACTATACGGAAGCAATTT--------CTGAGCCTGAACTGGTAACAACTAACATT-----TCGtagat-ttctgttt--tcatagATCTGTAGTACTCTACACACATTTCCCAATAATCACCCTTTAGTTCTCACT-------TTATTAGTTGCTCAGGTTTGTTATGAGAAATAGATTTTCATGCTTTGCTTGT-----------TCTATCGACGGCtgtgatttcaa----ttttattcatttttcctcagCTTaagaatt--------------------------tctttgaaac----atTCTA--TCTTCCCTGTACTgcttcaactttttgatttgcaCT-ATTCATCTGTTATCGttttgttcttctcatttctat---------
i caeSp111.Scaffold622  I 77 C 0
e caePb3.Scfld02_0      2644614 439 +  4147112 I
e caeJap4.Scaffold17084  320494 1029 -   375229 I

a score=-69.000000
s ce10.chrX             4408392 1 + 17718866 T
s caeRem4.Crem_Contig0  1357976 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105979 1 +   386604 g
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2645053 1 +  4147112 T
i caePb3.Scfld02_0      I 439 C 0
e caeJap4.Scaffold17084  320494 1029 -   375229 I
e cb4.chrX              9700218 0 + 21540570 C

a score=129166.000000
s ce10.chrX             4408393 275 + 17718866 TTGCAGTCCACCACCGCTCGAGTTCAAGCTGCTCAGGAGATTCGAGAGCAGCAACACAGACTACGGTGCGCTGTAAAAACGACTGTAGTGATAATCTCAGCGTATCTGGCCTGCAACCTCGTCAATTTCATTTTGTACATTTTGGAGACATTCCGAAGAAGCTGGATTATTGTGAG--------------------TGTACTTGGCTGGGCGGAGAGAAAAAAGTTGCGGTTTTGCAAAAAAAGTGACCAGTCG----CAAGGAGACTT--AGAAACAATAACATTCATCATAAGAGCTTA
s cb4.chrX              9700218 250 + 21540570 TTACAGTCTTCATCTGCTCGAAATCAAGCTGCTTTGGAAATTCGCGAGcaacaattcaaaatcaaGTGTGCCACAGAAACAACAGCAGTCATTATTTCCGCGTATCTGGTGTGCAACCTGTGCAATTTCGTGCTGTAcatcattgaaaatttcaaatctgaaataattttggTAAG--------------------TGTCACAA-----------------------------TTTACCAAGACTGACCAGTGGCGAGCAAAGGGACTT--AGTAACTAAAACATTCATCATAAGAGCTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1357977 262 -  4500979 TTCCAGTCAACCACCGCCCGTGTTCAAGCCGCCCAAGAAATCCGTGAGCAGCAACACAAAATTCGTTGCGCAGTCAAAACCACAGTAGTTATCATTTCTGCATATCTGGCTTGTAATCTCTGCAACTTCGTTCTCTACAGTTTGGAGACCTTCCGACGAGAATGGATCATGGTGAG--------------------TGTAGTAGACGATA----------------GAAAAATTGGAGCAAAACTGACCACTAGCG---GAGAGGACTCGAAGTAACTAAAACATTCATCATATGGGCTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   105980 262 +   386604 TTTCAGTCAACGACCGCTCGTGTTCAAGCTGCTCAAGAAATTCGTGAACAACAGTTCAGACTTCGATGCGCAGTCAagactactgtagttatCATCTCAGCATATCTAGCATGCAACCTTgtcaatttcattctttaTATTCTCGAGACATTCCGTAGAACATGGATTTTGGTAAG--------------------TCCAATGGTCAAA-----------------TGCGCTGGTTTGCAAAAATGACCAGTAACTGGCGGAAGGactt--agaaaaagaaacattcatCATAAGAGATTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2645054 258 +  4147112 TTTCAGTCCACATCTGCCCGGAACCATGCAGCCCAAGAAATCCGCGAACAACAGCACAAAATCAAATGTGCCGTCAAAACCACTGTTGTTATCATCTCCGCGTATCTGGCTTGTAatttcatcaacttcttccTTTACTCTCTTGAGACATTCAAAAGGAGCTGGATTGTGGTAAG--------------------TCTAATGGTCCGAATG-------------TTGccattttctgcaaaactgACCA--------CGGGGGGACTT--AGAAATGAATACATTCATCATGAGAGATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  321523 298 -   375229 TTTCAGACAACCACATCCCGAATTCAAGCTGCCCAGGAAATTCGGGAACAGCAGCATCGTCTGAGATGTGCAGTAAAGACTACGGTAGTGATCATTTCTGCATATCTGGCGTGTAACCTGATAAACTTCATTCTCTATATTCTGGAAACGTTTCGAAGGACCTGGATCATTGTAAGAaagaattttccaattttttttcctcggtttGTCTCCCtctttgtcttctttttttattctgCAAAAGTGACCAACAGAAA-AAGCAAGCCTT--TCAAAGTAGCACATTCATCACTGAAGATTA
i caeJap4.Scaffold17084 I 1029 I 16

a score=-4283.000000
s ce10.chrX             4408668 42 + 17718866 CGGGCTTTTGTGTGGGGGACTG-CAATGTAG--------TCGGA-GTGAAAA
s cb4.chrX              9700468 42 + 21540570 -------GTGTATTCATTGCTT-C--TGCACACGCCGAgtcagacagaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1358239 34 -  4500979 -------GTGTAGTGCGCGCTG-C--TGaat-------gtcgca-acaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   106242 34 +   386604 -------GTGCATTCATACTTGAC--TGCAT--------TCTAG-CCAGAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2645312 36 +  4147112 -------GTGTGTACGACGATGGCGAtgtat--------tcaca-aaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  321821 16 -   375229 I

a score=103138.000000
s ce10.chrX             4408710 329 + 17718866 ACGTGATA-GATTGA-AAAAAAGAAAATGAAAGGAACA---AAATAATTTCAGGAAGCAAATGGAGCATTTAAACCATTCTACGTCATAATTAGCGACCTTGGATCAAATCTCTTTGTGTTTTCGTCAACAATCAGAATATTTATATACTATAAATATAATCACGAAATTAAGTGAG-TTTTTTTTAGTTAAAAA----G----TTTTACATTTTACTCAATCTAATTGCGA------TTTGT----------TGCAGAAAGCTTATCAAAGACATCTGGGTGGTCAATTATATCATACAACAGGCACAACCTCCAAAGGCTGACACT------CTTTTGAAAATTGACAAGGTTGATGTATAGA------
s cb4.chrX              9700510 329 + 21540570 aaaacaca-gacaCAAGTAGAGTAAAATATAAAAACGGAGTGAAAATTTGCAGGATGGAAATGGGGGATTCAAGCCGTGGTATGTGATTTCGTGCGACGTTGGATCCAACATGTTCGTGTTCTCTTCAGCAGTACGGATTTTTATCTACTACAAGTACAACAGGGAGATAAAGTGAG--------------GAAC----A----TTCTAGTTCT---TTAATATAATGTTTC------TTTACAGTCACTGT-TTCAGGGTTCTTATCAAGAATACTCCTCTAATGAGGTATGCTCGAGGAGATA---GCGGTaaaaaaaTCGATGACGataatcttctgaaaatggaaagagTCGATGTTTAAA------
i cb4.chrX              C 0 I 410
s caeRem4.Crem_Contig0  1358273 310 -  4500979 aaaattc---------gaagagTAAAA-GTATGAATGG---GTAAATTTGCAGGAGGGAAATGGAGGCTTCAAACCGTTTTACGTAATCATAAGTGATGTTGGATCCAATCTTTTTGTATTCTCGTCCACAATCAGAATCTTCATCTACTACAAATACAACGCTGAAATCAAGTAAG--------------ATAC----AAATCATCTTGTTCC------AGATAA------------TTTATAGTTGATATCTTCAGAAAACTCATCAGAGAGATGTGGCTGGTCAACTTCATCATTACACATATTCGCCCTCTCAAAACCGATGCA------CTTCTTAAAATGGATAGAGCCGATGTTTGAT------
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold622   106276 304 +   386604 AAATC-----------ata---gaaaaagggaataTTA---TTGAACTTTCAGGAGAGCAATGGAGGTTTCCAACCATTCTATGTGATTATCAGCGACCTCGGATCGAATTTATTTGTCTTCTCATCAACTATCAGAATATTCATTTACTACAAAtacaattctgaaattaagtAAG--------------ATTATTGTA----CTgttgattt----caaaacaataaacT------TTTAT----------TATAGAAAACTTATCAAAGATATCTGGCTAGTCAACTACGTCATTCAACAAGCTCAACCTCCGAAAGCCGATAcc------cttttgaaaattgataaagtTGATGTTTAAC------
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2645348 309 +  4147112 gaatc-----------aaaaagaaaaaagcaaatatga---gtcaattttcaggaagaaaacGGAGGGTTCGCATCGTTCTATGTTATTTTGAGCGATTTGGGATCAAGTCTCTTTGTGTTTTCATCGTCGATAAGAGTTTTCATCTATTATAAATACAACTCGGAAATCAAgtaag--------------aaaa----a----ctggaaacca----GAAAATggttaattcaaaaattgat----------tccagGGAACTGATCAGGGATATGGCAATTGTCAGATATGTAATCGAGCAAGtaaatggaacaaaaagagATACT------CTTCTAAAACTTGATAGAGTTGATGTATAAC------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  321837 317 -   375229 -----ACATGACttg-gaaaacggaaaaagaaACAAGA----CTAACTTGCAGGAGAGCAATGGGGCCTTTCAGCCGTTCTACGTGATTATCAGTGACTTGGGATCGAATCTTTTCGTGTTTTCGTCAACAATCCGCATTTTTATCTACTACAAGTACAATGCAGAGATAAAGTGAGATAGTAACGAGATAAGAA----A----TTCGAAATTC--------------AACC------ATTTT----------TCCAGAAAGCTTATCAAGGATATCTGGGTGGTGAACTACATCATTAAACAGGCTCAACCTCCAAAAACTGATATA------CtgttaaaaactgaaaaagtaGATGTCTGACAGTAGC
i caeJap4.Scaffold17084 I 16 C 0

a score=-7386.000000
s ce10.chrX             4409039  81 + 17718866 ACTGTTGTAATTTGCG----TT--TTTTCTTGT------------------AAATTGTGGGTAAAATTC-----TAGTTATCAACCA---ACAACTCGGAGA-----TCTCCTAATTC---------
s caeRem4.Crem_Contig0  1358626  92 -  4500979 ACCTGCTTCTTTTTTGCtccttcattatttttca-----------------acattgtGGGTC--ACTTGAT--TAGTTATCAAccatataattttcaaatc-----tttgtgAAAAC---------
i caeRem4.Crem_Contig0  I 43 I 46
s caeSp111.Scaffold622   106582  72 +   386604 TTCGatgttcttttc---------ttgttttgg------------------------tGGGTCAAGATT-----TAGTTATCAGgcg---gaatttcaaatt-----tttgtgaaatc---------
i caeSp111.Scaffold622  I 2 I 29
s caePb3.Scfld02_0      2645659  86 +  4147112 CCCCACTCTCTTTATA----TTAATTGCCTTGA------------------ACACTCTGGGTCGTATTTTTG--TAGTTATCAACCA---AATTCTCAAATC-----TATGTGAACCT---------
i caePb3.Scfld02_0      I 2 I 33
s caeJap4.Scaffold17084  322154 123 -   375229 -CCTATTCTATTTAagaatttgtattttttctagTTGCTAAAAGATTTATTTAATTCTGGGTCATAATATAAGCTATGTATCATATG---CAAGTTTATACCTTTTGTTTGTAAACTTGACTGAATC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9700839 410 + 21540570 I

a score=-19825.000000
s ce10.chrX             4409120 107 + 17718866 TTTTGATT-----ATTTATTTTTCATTCATCTGCTTTTTTTATAT-CTTTTTACA--AACTCTATCTTCTTTCAATATTG--------------------CTATTTTTGAT---------AGTTGAAATAAATGTTTTGATGAA-----------------------
s cb4.chrX              9701249 103 + 21540570 TTTCTATTGTATGCTTCCTATCTTATTTG-CTTGTTCGC-------TTCCTCTCA--------AATTTCAACTGATATTG----------------ATATCTGTTTTCAAC---------GTTAGAAATAAATGTTTtgatgga-----------------------
i cb4.chrX              I 410 I 1
s caeRem4.Crem_Contig0  1358764 104 -  4500979 TCTCTAC------ATTCCTGTTTATATAA-CTGcttcat-------tttccatca--------aaCCGCTTTTCATGTTC----------------TGGTCTCCTTCCTATTTCGA--TAGTTagaaataaacattttgatgga-----------------------
i caeRem4.Crem_Contig0  I 46 I 1
s caeSp111.Scaffold622   106683 106 +   386604 TCTCCA-------Atatgattttctttca-ttcctttatttgtat-tttgcttcatcattttttgcgtctctctattttt----------tcagtgttcaCCGGTTAtcgt-------------------aatttttaaataga-----------------------
i caeSp111.Scaffold622  I 29 I 1
s caePb3.Scfld02_0      2645778 124 +  4147112 Tctcc--------atttcctcttcttcca-ttccaGTATATATGTATTTGCTTCA--------CacttctctccatttttgcTTCATCCGTCAATTCGCTCTGCTTATTTT-TCGA--CAGTtagaaataaatgttttgatggg-----------------------
i caePb3.Scfld02_0      I 33 I 21
s caeJap4.Scaffold17084  322277 134 -   375229 TCTGTACG-----AGTCGTCTTTCGGCCT-GTCCTAAACTCACAA-ATCTCttca------------tcttttctttttt--------------tatcttccgttttttGTTCCTAATTCAATTTATGTGAATGCTTTAGTTCctctttttgtctttttcttgCGCA
i caeJap4.Scaffold17084 C 0 C 0

a score=-16563.000000
s ce10.chrX             4409227 31 + 17718866 -----------------------------------ATATACACCCTCGCTATGATTGCCAGCCTT-G
s cb4.chrX              9701353 25 + 21540570 -----------------------------------gaaaaaaaacgagacaaG-----CGGCTCT--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1358869 23 -  4500979 -----------------------------------acgaaaacatt-ttcatg-----cAG-TCT--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   106790 15 +   386604 -----------------------------------ataaattcatt----------------tttt-
i caeSp111.Scaffold622  I 1 I 7
s caeJap4.Scaffold17084  322411 56 -   375229 TTATCCATCATTTGCTATGTTTTTCAATGattagaaaataaagaaaggaTAAA-----CTG------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2645902 21 +  4147112 I

a score=9564.000000
s ce10.chrX             4409258 112 + 17718866 AATTGA------AAAACAACTGTCAATGAAGAAACGGAATGAACTGGGATTGAATTTG--------AAAGAGGATTTAGACG----------------CATTTCCATGTCC----GT-TCAACTTGAATACAAACTAGATTGTTTTT
s cb4.chrX              9701378  91 + 21540570 ------------ACATGAACCAATTAAGAGAA---------GAGACGGATTGAATGAG--------AAGAAGCAATAGAACA----------------CACT------TCC----GT-TCCAGTTGCATACAAACTAGATTGTCatt
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1358892  94 -  4500979 ------------AAAACTGCTGTTTATGGACA---------CAAAAGGATTCGAGATG--------ACAAGGGATTAAGACG----------------CATTTCCATGTCC----GT-TCAACTTGAATACGAACCAGATTg---tt
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   106812  96 +   386604 aaacaG-CCAGCAAAACGGATGTCGTTGTT------------------ATCGAATGTG--------ATGCAGGATTAGG-----------------------TCCATATTCTATTGC-ACAAATCAAATACAAACACGAATCCTTTT
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2645923 102 +  4147112 aaataa------aaaagggttgtccatttcaa----------aaaaggattgaaTGCG--------GAGTAGAATTAAGACG----------------TATTTCCATGTCC----GT-TCAACTTGAATACAAACTAGATTGTTTTT
i caePb3.Scfld02_0      I 21 I 857
s caeJap4.Scaffold17084  322467 137 -   375229 AAccgaaccaaaaaaaaaactgggagaaaaag------CCTGAAAACAGCTGGAAATGCGTGACAAATAAAGAATTTAGACGTACATACAGACATACATACTTCCACGTTT----GTCTCATCTTGAATACGAACGGAAATGTTGTT
i caeJap4.Scaffold17084 C 0 C 0

a score=273.000000
s ce10.chrX             4409370 1 + 17718866 T
s caeSp111.Scaffold622   106908 1 +   386604 T
i caeSp111.Scaffold622  C 0 I 8984
s caeJap4.Scaffold17084  322604 1 -   375229 T
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2646025 857 +  4147112 I
e cb4.chrX              9701469 1 + 21540570 I
e caeRem4.Crem_Contig0  1358986 1 -  4500979 I

a score=-1009.000000
s ce10.chrX             4409371 8 + 17718866 GACGATTT
s cb4.chrX              9701470 8 + 21540570 ttcgaatt
i cb4.chrX              I 1 I 1475
s caeRem4.Crem_Contig0  1358987 8 -  4500979 ttcaagtt
i caeRem4.Crem_Contig0  I 1 I 2
s caeJap4.Scaffold17084  322605 4 -   375229 ---GATG-
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2646025 857 +  4147112 I
e caeSp111.Scaffold622   106909 8984 +   386604 I

a score=518.000000
s ce10.chrX             4409379 16 + 17718866 AAGCTGAGTTTTTTTG
s caeRem4.Crem_Contig0  1358997 14 -  4500979 cagcc--atttttctg
i caeRem4.Crem_Contig0  I 2 I 1777
s caeJap4.Scaffold17084  322609 16 -   375229 TAGtttagctttttct
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2646025 857 +  4147112 I
e cb4.chrX              9701478 1475 + 21540570 I
e caeSp111.Scaffold622   106909 8984 +   386604 I

a score=757.000000
s ce10.chrX             4409395 105 + 17718866 TGTTGAATTTTCTGCAAACTGATTTTCACCTTCATAGTGAATACACTCCTAGGGCGTCAAGCAACTAAAGAGCAAAGCATAACAA--------AAGGGAAAAAGTCAAAAAAT
s caeJap4.Scaffold17084  322625  88 -   375229 tttctgattt---------tgctttttagtttCTCAAT----------------TTCCAGACGACAAGGGAGCAAAGCAAAACAATTCAATTCATGGaacaaatcccgaaaat
i caeJap4.Scaffold17084 C 0 I 47
e caePb3.Scfld02_0      2646025 857 +  4147112 I
e cb4.chrX              9701478 1475 + 21540570 I
e caeSp111.Scaffold622   106909 8984 +   386604 I
e caeRem4.Crem_Contig0  1359011 1777 -  4500979 I

a score=0.000000
s ce10.chrX             4409500 1794 + 17718866  
e caePb3.Scfld02_0      2646025  857 +  4147112 I
e caeJap4.Scaffold17084  322713   47 -   375229 I
e cb4.chrX              9701478 1475 + 21540570 I
e caeSp111.Scaffold622   106909 8984 +   386604 I
e caeRem4.Crem_Contig0  1359011 1777 -  4500979 I

a score=182.000000
s ce10.chrX             4411294 2 + 17718866 AT
s caeSp111.Scaffold622   115893 2 +   386604 at
i caeSp111.Scaffold622  I 8984 C 0
e caePb3.Scfld02_0      2646025 857 +  4147112 I
e caeJap4.Scaffold17084  322713 47 -   375229 I
e cb4.chrX              9701478 1475 + 21540570 I
e caeRem4.Crem_Contig0  1359011 1777 -  4500979 I

a score=1532.000000
s ce10.chrX             4411296 16 + 17718866 AAATTTATTACCGATA
s caeSp111.Scaffold622   115895 14 +   386604 atatttattt--gaca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2646882 14 +  4147112 aaatttatta--gaaa
i caePb3.Scfld02_0      I 857 C 0
e caeJap4.Scaffold17084  322713 47 -   375229 I
e cb4.chrX              9701478 1475 + 21540570 I
e caeRem4.Crem_Contig0  1359011 1777 -  4500979 I

a score=1638.000000
s ce10.chrX             4411312 3 + 17718866 AAA
s cb4.chrX              9702953 3 + 21540570 aaa
i cb4.chrX              I 1475 C 0
s caeSp111.Scaffold622   115909 3 +   386604 aaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2646896 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  322713 47 -   375229 I
e caeRem4.Crem_Contig0  1359011 1777 -  4500979 I

a score=4150.000000
s ce10.chrX             4411315 83 + 17718866 --------------GAAAA--TAAAACCAATTAGACAAAACATTTGAAAACAGA-TCATTATTGGACACATATTGATTTCGGATCATT-CAAGTCCCGTCG
s cb4.chrX              9702956 74 + 21540570 ---------------gcaa--aaaaatgaataag------aagaagaaatt--a-tcAAACCATATCAAAATTTGACACAAAATTATT-CAATTCCCGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1360788 79 -  4500979 -------------gaaaag--aaaaatgacaaag------gatgaaaagATAGA-CCAACTCTGATCACACTTCAATACAGAGCCATCACAGTTCCCGTTG
i caeRem4.Crem_Contig0  I 1777 C 0
s caeSp111.Scaffold622   115912 84 +   386604 aaa--------gcggaaaacgAATAGCGAAAAATC-----AATGACAGATTGAA---AACTCGAATCACATTGTGATTTCAAGTTGTT-CATTTCCCGTTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2646899 98 +  4147112 taaaaaccgaggcagaaaa--aatacttgaaaaccgagaaaatgaaatttcaaaatcaacccaaatCACATTTTGATTCGAAGTTATT-CAAATCCCGTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  322713 47 -   375229 I

a score=277614.000000
s ce10.chrX             4411398 535 + 17718866  
s cb4.chrX              9703030 488 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1360867 509 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   115996 497 +   386604  
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2646997 516 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  322760 530 -   375229  
i caeJap4.Scaffold17084 I 47 C 0

a score=-16314.000000
s ce10.chrX             4411933 91 + 17718866 AATTTT--AaaagggggactaacggtttttagacaaacagtagtccaatgttcttaaatcaacgaatttcgtaatgagactTTTTAGATTTTT
s cb4.chrX              9703518 11 + 21540570 ---TATCCAATGGT-------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   116494 11 +   386604 -GTTAT--AAAAGG-------------------------------------------------------------------------------
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2647513 19 +  4147112 --tcat--aaaaat----------------------------------------------------------------------tcgATTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  323290  6 -   375229 -------aaaaag--------------------------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1361376  0 -  4500979 C

a score=-537.000000
s ce10.chrX             4412024 16 + 17718866 TTTTTTGTTttttttc
s caeSp111.Scaffold622   116505  7 +   386604 ---------TTTTTCC
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  323296 10 -   375229 -cttttGTTTT-----
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2647532  0 +  4147112 C
e cb4.chrX              9703529  0 + 21540570 C
e caeRem4.Crem_Contig0  1361376  0 -  4500979 C

a score=-438.000000
s ce10.chrX             4412040 18 + 17718866 agaagtctcattcgttca
s caeJap4.Scaffold17084  323306  4 -   375229 -GAAG-------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2647532  0 +  4147112 C
e cb4.chrX              9703529  0 + 21540570 C
e caeSp111.Scaffold622   116512  0 +   386604 C
e caeRem4.Crem_Contig0  1361376  0 -  4500979 C

a score=-9616.000000
s ce10.chrX             4412058 83 + 17718866 -----------tttcagcacattttgagtctgatggatatacgttcaaaatatccagaaccgttagtccttttttaGAACAAAGAGCCCAGACG
s cb4.chrX              9703529 26 + 21540570 ----------------GCACAATTGAAACCCAGTG----------------------------------------------------TTACACC
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1361376 23 -  4500979 -----------tctgagTACAGTAGGAATCTGAT------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  323310 30 -   375229 AATATATCAAGTTTCAACAAGATTACTACA----------------------------------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2647532  0 +  4147112 C
e caeSp111.Scaffold622   116512  0 +   386604 C

a score=273.000000
s ce10.chrX             4412141 1 + 17718866 A
s caeSp111.Scaffold622   116512 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  323340 1 -   375229 A
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2647532 0 +  4147112 C
e cb4.chrX              9703555 1 + 21540570 I
e caeRem4.Crem_Contig0  1361399 0 -  4500979 C

a score=331129.000000
s ce10.chrX             4412142 472 + 17718866  
s cb4.chrX              9703556 489 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1361399 480 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   116513 490 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2647532 488 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  323341 510 -   375229  
i caeJap4.Scaffold17084 C 0 I 1453

a score=-8410.000000
s ce10.chrX             4412614 229 + 17718866 TCAA-----ATTTC------AATTGTCTTCTCAGAGTCTCTCTAAGAAAAGATAATATATGGATAGATTGGAAACACTACTACAAAACTTTTCTAAATATGTTCACGTC----AATATCAAAAAGGTTGTATGTTTTTGGAAAAT-------------------TCTTTAAAATAACTACTTAAAACGATAACGGGCC--AACAAAATATTAACCAAGATGAACACATCACTGCAAATTCAAATTCAATTTCACTCTGGATTTTa
s cb4.chrX              9704045 148 + 21540570 TCAATGCTTTTTTC-----AGAGtgattgataga--ttttt------------------tctataga-----------------------------------taatttttctgaagagTGAAC------TACGGATAGATGAGAG-------------------TCCTAATCA-------GTGG---------GGGTTT-AACAAAATATCAACATAAGTATACACATCActgcaaattcaaattcactC---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1361879 193 -  4500979 tcaatgtttttttctatttaaagtGTTTTATAAG--TTTCTATGGATAGGTGA---CTATGTATAGACGGC------------------TAGATAGGTATGGTGACTTTTCAGATGTTCTAAA------AAGTGACATGTAATAG-------------------TCCTGATGGATGCTATGTGg---------gaatttcaacaaaatattAACATAAATTGGCACATCActgcaaattcaaattcactc---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   117003 191 +   386604 ---ATGCTTTTTGT------GTGTACCCGATAAATATATCTATGGATAGGAACAATCtatatatatataGG------------------TCTCTAGACAGAATTACACTAATCACTCCCCAAA------TATATTTTGGAGAaagatgat-------------tttttggtatGTTCTAAATAA---------Aggtc--aacaaaa-aataacaaagttT-ACACATCACTGCAAGTTCAAATTCACTC---------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2648020 197 +  4147112 TAAATGCTTTTTG-------ATGTATTCAATAAA---------AGATAG-------CTAGATAGAAAT-----------------------TCTAGATAGATATACACCAGTGATTATCcaga-------atatttctgaaaaag-tgattatTCTAAACTTGTTTCTAGTGT-TTCTAGATGG---------AGGTA--AAcagaa-ttcaacaaaatttaaCACATCACTGCAAGTTCACTCTCACTT-CACTGGAGATTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323851 1453 -   375229 I

a score=-14145.000000
s ce10.chrX             4412843 146 + 17718866 aggtgtagtaaggtggagtcagtggcaaaattgtttaaaacaactcctatgatgcgaaagtgaccaaatgtTTTCAAAATTTTCATTGACAGTTTGACACTTTTTATAAAATCCATATCACTGTGGCATGTTTGGGTCCATAAAat
s cb4.chrX              9704193  25 + 21540570 ---------------------------------------------------------------------GTTTT-------------------------------------TCTTGGTCAC--TGGTTTGCTT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1362072  18 -  4500979 ------------------------------------------------------------------------------------------------------------------TGGTTAC-ACTGCATGttt-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   117194  27 +   386604 ------------------------------------------------------------------------------------------------------------------AAATTGC-ACTGGATATTTGGGTTTATG----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2648217   0 +  4147112 C
e caeJap4.Scaffold17084  323851 1453 -   375229 I

a score=3261.000000
s ce10.chrX             4412989 239 + 17718866 gttttgtcattttggcattgtaggagtggttgttaatcattgctcactggcgctactccacctttaaAAAATCTCAAATTCCTT--CAATTAGTTTTTGTTATTTATTTTTAGTGAACTCAAAAGTTGAGGGAATTACGTTTAACATATTCAAGTTTATATGAATAAAACCGTGCCAGTGTG----AAGAACATGAAATTGCAGGAA---GTGTTAC---------G--AGGGAGGTAG------GTGAATT------TGGGGGATATATG
s cb4.chrX              9704218 168 + 21540570 -----------------TCGTTgtgat--tcaaaaatcga--------------------------aataatgaaagaaaaact--gaaCTGGTTTGAGAT----------TAAAAACGC-----------------------------------------AAATGAAACCGTGCCAGTGTGTTGATAGAACATGAAGTCGCAGAGGGATGTGTTAGGATATCATAGTAGGGAAAATCG-AAATAGTAGACAGT----TAAGGTATAAGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1362090 162 -  4500979 -----------------tctttgaa-----taaaaatcag----------------------tctcaaaaaaaagaaaaaactc--aaaaagattttgaat-------------gaaCGCA------------------------GTGT---------AAGAAATAAAACCGTGCCAGTGTG----AATAACATGAAATCGCAGGGA---GTGTTAG---------GTATGGTAGACAG-TAATGATATACGGTAATATAGGGGGTAATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   117221 173 +   386604 ----------TGTCATATTATCAAA----TCtcaaatcag----------------------ttttcaaaac--taggTAACTC--AAAccggttttcaaa----------aagaaacgca------------------------ttttca-----aaaataaatgaaaccGTGCCAGTGTG----AAGAACATGAAATCGCAGGGA---GTGTTAG---------GTAAGGTAGACAGTTACTCGAGAATGTTTCAGAAGGGAGTAG---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2648217 157 +  4147112 --------GATTTATGATTGTTGAA----TCAGAA----------------------------------------AGGTaactcaaaaataagtttttggg----------AATGAACACA------------------------TTATT------CGATTAAATAAAACCGTGCCAGTGTG----AAGAACATGAAGTCGCAGGAA---GTGTTAG---------GTAAGGTGGACAG-TAGTTGAGAATGT-----AAGGGGGTAGGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  323851 1453 -   375229 I

a score=334752.000000
s ce10.chrX             4413228 588 + 17718866  
s cb4.chrX              9704386 611 + 21540570  
i cb4.chrX              C 0 I 62
s caeRem4.Crem_Contig0  1362252 564 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold622   117394 584 +   386604  
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2648374 581 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  325304 630 -   375229  
i caeJap4.Scaffold17084 I 1453 C 0

a score=-3414.000000
s ce10.chrX             4413816  34 + 17718866 ------------TATAAAAT------GC-----GAACATTGAAAATT----GTT-------------GGAAAAC------------------------------
s caeRem4.Crem_Contig0  1362838  49 -  4500979 ------------cTTCAAACTCTCAGGcagttggaagagaaaaaatctataaCT-------------GGAGCAC------------------------------
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold622   117980  49 +   386604 ------------cttcaaactttcaagcagttggaagaggaaagaTCTATATCT-------------GGAGCAC------------------------------
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2648958  42 +  4147112 ------------tttcaaac------gcagtcggaaga-aaaaaatctatatcT-------------GGAGCAC------------------------------
i caePb3.Scfld02_0      I 3 I 2
s caeJap4.Scaffold17084  325934 104 -   375229 GATGACACCCCCGCTCtgatttttgcactgcgttcagttgaaaaatctATGTTTACTGTAGCCgtcaagaatattgaattgataatagcatCGTTCAAAGAGCC
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9704997  62 + 21540570 I

a score=298888.000000
s ce10.chrX             4413850 439 + 17718866  
s cb4.chrX              9705059 429 + 21540570  
i cb4.chrX              I 62 I 20
s caeRem4.Crem_Contig0  1362887 426 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   118029 427 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2649002 440 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  326038 501 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=-5871.000000
s ce10.chrX             4414289 19 + 17718866 TGTTTGGTGCTCAGCAAAT-------
s caeRem4.Crem_Contig0  1363319 19 -  4500979 TGTTGAGTGTCCAATTCAT-------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   118456 11 +   386604 --------ATTTCCTTTAT-------
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2649442 11 +  4147112 --------TTTCTCTTTCC-------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17084  326539 23 -   375229 ---aaaaattttcgtaAACAATGGTT
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9705488 20 + 21540570 I

a score=149567.000000
s ce10.chrX             4414308 255 + 17718866 ATTTTCAGAC----------CTGATATACACCATTGGCCGACTGATATGCCAATATCTATCCAATGAAATTGCGCAAAGATTCAATATACTAGCTGTGCATGTGGTGATGTCAAAACTAATCCAGAATTGGCAGTAAAACTGTCCGAACGGCCAGTATCCCAAGATATCGTTGACTGCAGCAAATAGCATAACCTGAAGTACGTCTTACTGTTATT-------TTTC------CAACTC---------------------CAAATCGGAAGCATCCCGGCCAGAATTCCATTTTTAGA----------------------A
s cb4.chrX              9705508 308 + 21540570 ATTTTCAAGC--------ACCTTATATAGACCATTGGTCTACTAATATGCCAATATCTATCCAGAGAAATTGCACAAAGATTAAGTATGCTAGCCGTACACGTCGTAATGTCAAAACTGATCCAGAACTGACAGTAGAATTGACCAAATGGCCAGTAACCCAATATGTCATTCACCGCAGCAAACaccatgacctgaaaaa----ttaattttaatttcccCGCATCTTTAAACAACTCAAAGTCATCTTGTTTgctctcaaaaacaaaaagatctct-tcttgtttccatttttagatATCGTTGGCACATACACCCAGA
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1363338 282 -  4500979 ----GCGGAC------AAACCTTATGTACACCATTGGTCTACTGATATGCCAATATCTATCCAGAGAAATTGCACAAAGATTCAAAATGCTAGCTGTGCAGGTAGTAATGTCAAAACTGATCCAAAACTGACAGTAGAATTGACCAAACGGCCAGTACCCCAATATATCATTCACTGCAGCAAACACCATAacctgaaa--------acttttaat-------caTC------AGACCCAAAAATACCCTTTCATTTGTTTGAACAAAAACCCTACAT-CcttgtttccatttttagatGTCAGCAATTCTTTC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   118471 290 +   386604 -GTTTCGAATTGTA--TAACCTTATATAGACCATTGGTCTACTGATATGCCAATATCTGTCCAAAGATATTGCacacaaattcaaaatgctaGCTGTACATGTAGTAATATCAAAACTGATCCAGAATTGGCAATAAAACTGCCCGAAAGGCCAATATCCCAGAATATCATTTACCGCCGCAAACACCATGACCTGAAA-------------TTCT-------CATTTG----CAATTCGTAACAATTGTGTGTATTTGTTTAATGAATATTCTTTCACCcatgtttccatttttagattCCCCT-GCACATTTCTC---G
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2649455 278 +  4147112 -GTTTTGAAT--------ACCTTATATAAACCATTGGTCTACTGATATGCCAATATCTATCCAAGGAGATAGCacataaattcaaaatgctAGCCGTACACGTTGTAATATCAAAACTGATCCAGAACTGGCAATAAAACTGACCAAAAGGCCAGTATCCCAAAATATCATTGACAGCAGCAAACACCATGACCTGAAA-------------TACC-------Catc--------atttgaaacaattgagTTTTTGTG-CAAATGA--ACCCCATATCCcttgtttccatttttagaTGTTA---GCACACTTCTCCCGG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17084  326562 249 -   375229 ----------AGTGACTAACCGTATATAGACCATTGGTCGGCTGATATGCCAATACCTATCCAATGATATTGCACAAAGATTAAGTATGCTTGCTGTGCATGTCGTAATATCAAAACTAATCCAGAACTGACAATAAAATTGGCCAAATGGCCAATATCCCAATATATCGTTAACTGCAGCGAACACCATTACctggaa--tttttcgttttctgt-------tttt------tcaatcaaaac----------------taaaaaaaaa---------caagaatttcAAGTCTAGGA----------------------
i caeJap4.Scaffold17084 C 0 I 703

a score=93374.000000
s ce10.chrX             4414563 157 + 17718866 TAGCCAATGTATCC-CCGCGTGTCTAGTGAGATTCATCAAAAAAA-------------GAG-GAGAGGTCTAGGTGCAATTTAATCAACACAAAGTGTGACT---CGACCCATTTGACTCTTTC-CGCTACGCTTACTGCGCAATAAAAAA--GACTACCGGA-----TGT--TAAATTTGAACT
s cb4.chrX              9705816 180 + 21540570 GGTCTGGAGCATCTCTTGCGTGTCTAGTGAGATTCATCACAAAAAATAGTGAGAAAGCGAGAGCAAGGTCTAGGTGCAATTTAATCAACAAAAAGTGTGACTCGACGACCCATTTGACTCTTTTGCGTTACGCTTACTGCGCAATAAAAAA--TGCTACCGGAGTTTGTGT--AGAGTTGAATT-
i cb4.chrX              C 0 I 482
s caeRem4.Crem_Contig0  1363620 154 -  4500979 -----GGAGCCTCT-TCGCGTGTCTAGTgagattcatcaaaaaaa-------------gagagcaaGGTCTAGGTGCAATTTAATCAACAGAAAGTGTGACT---CGACCCATTTGACTCTTTC-CGCTACGCTCGCTGCGCAATAAAAAA--TGCTACCGGA---TATGT--TGAATTTGACA-
i caeRem4.Crem_Contig0  C 0 I 168
s caeSp111.Scaffold622   118761 159 +   386604 GGTCT--AGCATCT-TTGCGTGTCTAGTGAGattcatc--aaaaa-------------gagaGCGAGGACTAGGTGCAATTTAATCAACAAAAAGTGTGACT---CGACCCATTTGACTCTTTC-CGCTACGCTTACTGCGCAATaaaaaaaCGGATACCGGA---TATATCCTGAGTTTGATA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2649733 157 +  4147112 GGTCT--AGCATCT-TTGCGTGTCTAGTgagattcatcaaaaaaa-------------gagagcgagGACTAGGTGCAATTTAATCAAC-AAAAGTGTGACT---CGACCCATTTGACTCTTTC-CGCTACGCTTACTGCgcaataaaaaag-agataCCGGA---TATGT--TGAATTTGCTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I

a score=0.000000
s ce10.chrX             4414720 5 + 17718866 AGACT
e caePb3.Scfld02_0      2649890 0 +  4147112 C
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeSp111.Scaffold622   118920 0 +   386604 C
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=-265.000000
s ce10.chrX             4414725 53 + 17718866 TTTAGACATTTCGATCAAAGTTTG------------GGTGGAAAAAATGAGTTGAAGATCAGAAA--------
s caeSp111.Scaffold622   118920 44 +   386604 ---CTACACTTTAACTAAACTTTG------------------GGAATTCAGTTGGAGttcagaga--------
i caeSp111.Scaffold622  C 0 I 90
s caePb3.Scfld02_0      2649890 73 +  4147112 CTTCTGCTCTACACCTAAACTTTGAAAGCGAAACAAGTCCGCGGATGTgagaggaaattgagaatcaGATTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=502.000000
s ce10.chrX             4414778 19 + 17718866 GCAAAAATTGGCATTTTTT
s caePb3.Scfld02_0      2649963 19 +  4147112 GAGAAAGCTACAGTTTTTT
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeSp111.Scaffold622   118964 90 +   386604 I
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=0.000000
s ce10.chrX             4414797 523 + 17718866  
e caePb3.Scfld02_0      2649982   2 +  4147112 I
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeSp111.Scaffold622   118964  90 +   386604 I
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=1069.000000
s ce10.chrX             4415320 63 + 17718866 TTGGCGGTACATTATTATTTTGTTAGAGTC------AATTTCCTTTATCACCGAAATAGGAGTACTAAC
s caePb3.Scfld02_0      2649984 66 +  4147112 TTGGTGGtagatt-tgatttt--cagggcTGTGCAGAATATTCCTCTTCACCGATATGATAATAAAAAC
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeSp111.Scaffold622   118964 90 +   386604 I
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=129.000000
s ce10.chrX             4415383 13 + 17718866 TAAGTATCTACGG
s caeSp111.Scaffold622   119054 13 +   386604 TAAACACTTAACT
i caeSp111.Scaffold622  I 90 C 0
s caePb3.Scfld02_0      2650050  8 +  4147112 -----GCTTAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9705996 482 + 21540570 I
e caeRem4.Crem_Contig0  1363774 168 -  4500979 I

a score=41554.000000
s ce10.chrX             4415396 114 + 17718866 --TCCGTGTGAATGTCAGCACAATGTGAGCCATTTCTTTTCC----GAAGCAATCTCCCTCC---CCAGCAACAATACTCTCAAATTAGATTTAAGGCATC--TTTTCGCGAGTCCTCCTTGTAT
s cb4.chrX              9706478 120 + 21540570 TCTGTGTGT--ATGTCGACATGAAATTTTCCACCGCCACTTCGCAAGTAGATATCtttttttGTGCCAGCAACAATACGCTCAAATTAGATTTAACGCATC---TTCCTCAAGCCATTCTTGTAT
i cb4.chrX              I 482 C 0
s caeRem4.Crem_Contig0  1363942 107 -  4500979 --TCCGTGT--ATGTCAACATAAAGTGTGCCACTTCTTCTATTC--GGAGCTATCT---------CCAGCAACAATACGCCCAAATTAGATTTAAGGCATC---CTTCTCGGGACATTCTTGTAT
i caeRem4.Crem_Contig0  I 168 I 134
s caeSp111.Scaffold622   119067 108 +   386604 --TCCGTGT--ATGTCAGCATG--------TGCCACTTTTATTC--GGATCTATCTTTTCTCA--GCAGCAACAATACGCTCAAATTAGATTTAGGCCTTCACTCTACTCGGacc-tttttgtat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650058 105 +  4147112 --TCCGTGT--GTGTCAACATG--------CGCCACTTCTCTCG--GGAGCTATTTTCCTTTG--CCAGCAACAATACGCTCAAATTAGATTTAAGCCATC---CTTCTCGGACC-TTTTTGTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I

a score=546.000000
s ce10.chrX             4415510 1 + 17718866 T
s cb4.chrX              9706598 1 + 21540570 T
i cb4.chrX              C 0 I 43
s caeSp111.Scaffold622   119175 1 +   386604 t
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650163 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=1703.000000
s ce10.chrX             4415511 81 + 17718866 TCTACGGCAGAGAGAGAGCCGAAAAACCCCGAAATATTTATCCGGCAGTTATT--TCCTCA----ACACCCCGTAAGGCAGAGAACA
s caeSp111.Scaffold622   119176 65 +   386604 -------------------caactactccaaaaatattcagaaaatggttATTCCCCCTAAA---ACTCTCTCAATAACAAAGAACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650164 56 +  4147112 -------------------------CTCCCAAAATATTCCG----CGGTTATT--TTCTGAACCCACTTCCCCAAAGGCATAGAACA
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9706599 43 + 21540570 I
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=285.000000
s ce10.chrX             4415592 13 + 17718866 TGTATGAATGCGA
s caeSp111.Scaffold622   119241 13 +   386604 TATGTGTAAGTAA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2650220 21 +  4147112 I
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9706599 43 + 21540570 I
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=0.000000
s ce10.chrX             4415605 236 + 17718866 ACGAAGAAAGTATATGCATGAATAAGTATGAAGACTCGGAAGTCTCTATGACTTTACCGCTAGAAACATTTCCATCTTCAAAGCTTAtggggttattcgagtagtgtcgggaaattaaaaagtgtagaaaaattacgtcacaactgtattaaaatacataaaaacatgtattttaatacagttttgacgtcataaatgtatttaaaaacatcttgcaacatcacttgaataacccc
e caePb3.Scfld02_0      2650220  21 +  4147112 I
e caeJap4.Scaffold17084  326811 703 -   375229 I
e cb4.chrX              9706599  43 + 21540570 I
e caeSp111.Scaffold622   119254   0 +   386604 C
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=397.000000
s ce10.chrX             4415841 20 + 17718866 aTTATATCCTTATATATACC
s cb4.chrX              9706642 20 + 21540570 ACTCTACCGATACCCACACC
i cb4.chrX              I 43 C 0
e caePb3.Scfld02_0      2650220 21 +  4147112 I
e caeJap4.Scaffold17084  326811 703 -   375229 I
e caeSp111.Scaffold622   119254  0 +   386604 C
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=-800.000000
s ce10.chrX             4415861 2 + 17718866 AT-
s cb4.chrX              9706662 2 + 21540570 -CG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   119254 2 +   386604 AT-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2650220 21 +  4147112 I
e caeJap4.Scaffold17084  326811 703 -   375229 I
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=450.000000
s ce10.chrX             4415863 2 + 17718866 AA
s cb4.chrX              9706664 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   119256 2 +   386604 TA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650241 2 +  4147112 AA
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17084  326811 703 -   375229 I
e caeRem4.Crem_Contig0  1364049 134 -  4500979 I

a score=191871.000000
s ce10.chrX             4415865 193 + 17718866 ACTCACCAACACTGAAACCAATAAGTCAGACACGGCCAAAGAAACAAGGAAAAGGTTTTCCGGTTGTTTTCGTAACGATCGGTCCCATAATATGGCGGCACAAACAAGTAGGTTACCGAACAGAGCCAAAATAATCAAGACGGAGAATAATCCGAGCAATGGCCATTGCAAATCGTTCATCGAATTTCTGGAA
s cb4.chrX              9706666 193 + 21540570 ACTTACTAAAACCGATACCAAAAGATCCGAGACTGCAAGCGACACCAAGAACAAGTTCTCGGGTTGTTTCCGCAACGAGCGATCCCACAGGATAGCTGCGCATACTAGTAGATTACCGAACAGAGCCAAGATGATCAGGATGGAGAACAGCGCGAGCAGTGGCCATTGCACTTCGTtcatcgaatttctgaaa
i cb4.chrX              C 0 I 576
s caeRem4.Crem_Contig0  1364183 193 -  4500979 ACTCACCAACACTGATACCAACAAATCCGAAACTGCTAGTGATACCAAGAACAGATTTTCTGGCTGCTTCCGTAGTGATCGGTCCCATAATATGGCAGCACAGACAAGCAGGTTACCGAATAGAGCCAAGATGATCAAGATGGAGAAAAGTCCGAGCAAGGGCCATTGCGTTTCGTTCatcgaatttctgaaa
i caeRem4.Crem_Contig0  I 134 I 1
s caeSp111.Scaffold622   119258 193 +   386604 ACTTACCAACACTGACACCAACAAGTCTGAAACTGCTAACGAGACTAAAAAGAGGTTCTCCGGTTGCTTCCGTAATGATCGGTCCCATAGTATGGCAGCACAAACAAGTAGGTTACCGAACAGAGCCAAGATGATcaagatggaaaaaagtcCGAGCAGTGGCCATTGCACTTCGTTCATCgaatttctagaa
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2650243 193 +  4147112 ACTTACCAAAACGGAAACAAGCAAATCTGATACCGCCAACGACACCAAAAACAAGTTCTCCGGTTGTTTCCGCAGTGACCGATCCCATAATATGGCAGCACATACAAGCAGGTTACCAAAAAGAGCCAAGATGATCAAGACGGAGAAAAGTCCGAGCAATGGCCATTGCACTTCGTTCATCgaatttctggaa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  327514 193 -   375229 ACTCACCAATACGGAAACAAGTAAATCTGATACAGCCAACGACACGAGAAACAAGTTCTCGGGCTGTTTCCGCAGCGACCGGTCCCATAATATAGCGGCACACACCAAAAGGTTACCGAACAGAGCCAAGATGATCAGTGTAGAGAAGAGTCCGAGCAATGGCCATTGCACTTCGTTCATTGAATTActgcaa
i caeJap4.Scaffold17084 I 703 C 0

a score=457.000000
s ce10.chrX             4416058 5 + 17718866 AAAAA
s caeRem4.Crem_Contig0  1364377 5 -  4500979 aaaga
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   119452 5 +   386604 cttGA
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2650437 5 +  4147112 attga
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  327707 5 -   375229 aaaaa
i caeJap4.Scaffold17084 C 0 I 86
e cb4.chrX              9706859 576 + 21540570 I

a score=-9662.000000
s ce10.chrX             4416063 122 + 17718866 ACATTGTGAGGATTGTTTTTTAAAAGTATAGATGCAGGATAAACGTAAAAAAAGTTTATCTCGTCTCAAAGAAACAAAACAATTATTAGAGGATGGGTGAAAAAAGCCAAAGATGATAAAAT
s caeRem4.Crem_Contig0  1364382  40 -  4500979 gc----------------tttgagaaaaagaaaaacaattaa-------------------------agagcaaaaaaaga-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   119457  59 +   386604 AC--------------TTTTTAGGAGAAACAAGACCAACAAGACC----------------------Agacgaatgaaaaa-----tagaa----------------------tgatgAAAC
i caeSp111.Scaffold622  C 0 I 24
s caePb3.Scfld02_0      2650442  75 +  4147112 AC-----------------TTGGGACCAAGGAGATCGACCAGAcacgg-------------------aaaagaagaagaaa-----caaagtgTAACTGA------TTTGTATTCATGAAAT
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17084  327712  86 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I

a score=-4330.000000
s ce10.chrX             4416185 67 + 17718866 CAACGTGTTATATCTCTTGGTTGTTTTCAATTGTTTAAAAAATATTTTGCTCGTAATTTTTCGGTTG
s caeRem4.Crem_Contig0  1364422 19 -  4500979 ---agtttt-------------------------------agAGATTCGGTTA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2650527 50 +  4147112 -aaagtttt---tctatt-----tttacagaagtgacaaagaaaaattgatcatgATTC--------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17084  327712 86 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I
e caeSp111.Scaffold622   119516 24 +   386604 I

a score=-232.000000
s ce10.chrX             4416252 21 + 17718866 AACTTTTTTTTAAAAGAGATA
s caePb3.Scfld02_0      2650577  7 +  4147112 --------------AAATATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327712 86 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I
e caeSp111.Scaffold622   119516 24 +   386604 I
e caeRem4.Crem_Contig0  1364441  0 -  4500979 C

a score=-5318.000000
s ce10.chrX             4416273 123 + 17718866 -----TGAGCTGTTAGAGGAGACTTATGAACCTTGTATAATTTTTTTACGATCTGTTCAATTTTGTAAGAAATTTCTAAGTGCGCATTGAGCCATCATTTGTGAAATGTCTCAAACCAAGAAAAGCCT
s caeSp111.Scaffold622   119540  45 +   386604 -----TGGGCTTTCAAAGG----------------------------atggagaaaagaattt------------------------------------------------cGAATACAGAATAAC--
i caeSp111.Scaffold622  I 24 C 0
s caePb3.Scfld02_0      2650584  69 +  4147112 CAAactgatgtttcaaaaa----------------ttcggttTTATCACGTAGTCTACAACTTTTCAAG-----------------------------------------CTGAACTTAGGATAGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327712  86 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I
e caeRem4.Crem_Contig0  1364441   0 -  4500979 C

a score=-13122.000000
s ce10.chrX             4416396 122 + 17718866 TTAAAGTTTGCCGGAAAACTTCTAAAAGGTGGAATTGatattattgaaaaaaaattatttttttaaCACTACTT--TACAGTAGCATTCCATCATCATGATACATTTTGATTTTTTTAAACCAG
s caeRem4.Crem_Contig0  1364441  46 -  4500979 -------------------TTAAAGATTATAgaagaaattg------aca---------------------------------------------------aaaacatAGTTTGTTGACACT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   119585  84 +   386604 -------------GAGAAACTTGAGAAGGTTGATAGAATTGTGTTGAACATGACACGcctc---------attt---------------tttaatctgG-CTGTTTATAATCTGTTCTGAGT--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650653  95 +  4147112 -------------GGTTTcttagaaaaagttgaacaaacTATAATGAATA------GCCTCAATAAGGCAATTTACAAAGGTAACAATGTCTAATCTTG--GAATCATAATCTCTT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  327712  86 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I

a score=4901.000000
s ce10.chrX             4416518 226 + 17718866 TACTCTAAGAAAACAAACTCCA----------------AATCAGCAAGAATACGTGATACTTC-AGAACACTGGTT---------ATGTTCGAGTATCAAGCGGATTCAAGAGTAATTGACT----TCTTTCTTTC-TTTTCTCTCAGATTTCTTCCTCTACAATTT---------CACGTCTTCCCTCCTG---TGACTTGTCAATACCG--CT--------------AGTAGTTGG-------------------------TTGACGTC-AA-AAAGGCCTTTTGATAAACAGTTTTCGAGTCGCCGCC-----------------------G
s caeRem4.Crem_Contig0  1364487 235 -  4500979 ---------ATAAGAGACACCA----------------GTAAAGAATAGAAACGTg--acatc-aaaataaaaaga---------ttgtTCGAGTAAGAGACGGATTC-AGACTAATTTACT--TCTCGTTTTCCT-TCTTGTCACTGATTTCCCTTT-TTAAATCTTCACGTCGACACGTTTTCTCAATTC---CTACTTCACAATATCG--------------------CACTATT-------------------------CTGACGTC-AATTTTAGTTATATAATAAACAGT---------GCTATCAGacctgaacaaaaaataatagat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   119669 219 +   386604 ---------AAATATGACAcca----------------gagaaaaacagataCGTG--ACTTC-AAAATAGTAAGC---------TTGTTCGAGAATCAAACGGATTG-AAAGTAATTGACT----TCGTCTTTCC-ATT---CTCCGATTTCTTCCT------------CGCCT-CTCGCCTTCTCAACTT-TAGTACTTGACAATATCG--------------------AAGTGGA-------------------------TTGACGTC-ATTTTGGATACCCGGGTTCACAGT---------GAGACCGTGTTCAAGCGAAGTA-AGAAGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650748 232 +  4147112 ----------GGAATGATACCA----------------GCATCAAA-AGATACGTG--Acttcaaaaatagtaaaa---------ttgTTCGAGAAGCAAACGGATTC-AGAGTAATTGAct--tctcgtcttttt-ttttg-ctccgatTTCTTCCTTGGCATTCTTCACGTCG-CTTGCTTTCTCAACTTCTACTACTTGACAATATCGCACT--------------AAAAGTGGA-------------------------TTGACGTCAATTTTCGGTTCTATGATAGACAGT---------GCCACCCTACTGGAACGA-----------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  327798 274 -   375229 TATTCAAAGAAAATATGCTCTAACAATATTAGGAAATTAAGAAGAATGTTGACGTG--ACACT-GGAACAATCTACAAAGGCTAGTTGTTCGCAAAGTCATCCGATTC-AGGGTAATtgacttctctcgtttttctgatttttctctcttttctttca----ctttttcacgtcgccttgctttctttctat------tctAGCAATATCG--CTAtcttgccaaaaaaaaaagcaaagaaaaaaaaaaataaaaaaaaaaaactgacgtC-A-------------GATTTCGAGT---------AGCATCCG----------------------
i caeJap4.Scaffold17084 I 86 I 34
e cb4.chrX              9706859 576 + 21540570 I

a score=2298.000000
s ce10.chrX             4416744 7 + 17718866 GAGAGTC
s caeRem4.Crem_Contig0  1364722 7 -  4500979 gAGGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   119888 7 +   386604 AGGGGTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650980 7 +  4147112 GAGGGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328072 34 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I

a score=39469.000000
s ce10.chrX             4416751 138 + 17718866 ATTTGTCTTTCGGG-------------------------------AACTCGA--TCTCATTTTATGAGTGAGT-AGTCATATCTAATAAGTATTCATATGAGCCTCG----TTTGAATAATAACTAGCAATTACTGATTCACATGA-----------------CCCTTCATTTCCTCA-----GTTTTCGGAACACCG
s caeRem4.Crem_Contig0  1364729 138 -  4500979 GTTGTTCCatc----------------------------------acttttctttctcattttacaAGTGAAT-AGTGACATCTAATAACTATTCATTCGAGCCTAC----TCTGAATAATAACTACTCATTACTGATTCATATGA----------------CCCCCtcatcttctca-----atttctggaaCACCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   119895 135 +   386604 AGTTGACTATC----------------------------------TAGTCGA---TTCTATTC----TTGAGT-AGTCACATCTAATAACTATTCATCTGAGACGTC----TCTGAATAATAACTAGCGATTACTGATTCATTTGA-----------------GCTCTCATCTTctcgtctttttctctcgaacaCCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2650987 138 +  4147112 GTTTGACTGGC----------------------------------TActcaaatcttcttttctcatttgagT-AGTCATATGTAATAACTATTCATTTGAGACGCT----TTTGAATAATAACCAGATATTACTGATTCATATGA-----------------GCCCTCATCTTCTCA----GTTTTCTGGAACGCCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  328106 192 -   375229 ACTTTTATTACGAGGTCTCATGATTTGAGATTAACGAATATATATAACTTGA-TCCTCATTTTACTAGCCAGTCAGTCATATCTAATAAGTATTCATTCGAGAATTTGCTACTTGAATAATACGCAACGATTACTAGTTCACAAGAGAGTGTCACGCTTTGCCTCCTGCATCGCCTCA-----GTTTTCCGAACACCG
i caeJap4.Scaffold17084 I 34 I 1339
e cb4.chrX              9706859 576 + 21540570 I

a score=1083.000000
s ce10.chrX             4416889 24 + 17718866 TCGAGAATTG--AATGTCTCGTTTTC
s caeRem4.Crem_Contig0  1364867 25 -  4500979 TGATCAAACGA-AATGTCTCAAGTTC
i caeRem4.Crem_Contig0  C 0 I 91
s caeSp111.Scaffold622   120030 26 +   386604 AAGTTAAATGAGAATGctcctctttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2651125 26 +  4147112 CGGTCAGATAGGAATGTGTCTACTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328298 1339 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I

a score=-4590.000000
s ce10.chrX             4416913 93 + 17718866 ------AGCG-GTTCA------GAATAAAATGTTACATATTTCAGTTACTAAATTGAATTCTCAGAGTAAATATGAGTTCTCATAAGCATGCGGGATAAGTGTTCT
s caeSp111.Scaffold622   120056 90 +   386604 cttgttattaCATTCACACATTGAATAGCCTGTT-CTTAATCTGAACATGAAGTTGAAATATC--AATAAATACAAG-------------GTGGGAGATCTATTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2651151 64 +  4147112 TCAAATAGGA-ACTCTCAGTGGGGATAA--GGAT-CATAATTT---------GTCAAGGTCTT--ATTAGATA---------------------------TATTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328298 1339 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I
e caeRem4.Crem_Contig0  1364892 91 -  4500979 I

a score=-3795.000000
s ce10.chrX             4417006 65 + 17718866 CAGGATGATTTTATAGAGATTCT-TATAAAACTTTAACA--TTAACAC----GGAA--GCCAATGAAGAAACAA--------
s caeRem4.Crem_Contig0  1364983 62 -  4500979 -----------CATGAACTTTCTACGAAGAAACTTG-----CTAACCT----AAAACTGACGAGGAAGAGGAAGctaaacaa
i caeRem4.Crem_Contig0  I 91 C 0
s caeSp111.Scaffold622   120146 60 +   386604 ---CATGA-ATGATGAAT------CTCAGAAGTTTGACCTCCTGCTCT--CTagaa--gacaaggaagaagaaa--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2651215 64 +  4147112 ---AGTGGTATTGTGATT------CAAAGAAGTTTGAACTCTTACCCTAACAAAAAC-GACAAGGAAGCGAAAA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  328298 1339 -   375229 I
e cb4.chrX              9706859 576 + 21540570 I

a score=47935.000000
s ce10.chrX             4417071 143 + 17718866 ---AAACAAGGAAACAAGTAAAAAG------GGGGAAAACTGCAGAAAGCGTTTTTCTAAGGTCAATTAACATTCGTAAGCAGCAATGCAGCCC---GACTCTTAATCTATGCATCAGAACGGAACA------TCGCTTTCAGTGGAATCTAATCTGACTA
s cb4.chrX              9707435 119 + 21540570 aaggaagaaaaaaattagaaaggag-----agagaagaa------aacGTTTTCTCTTAAGGTCAATTAACATTCGAGAGCAGCA----AGTGCCGAATCGCTTAATCTATGCATCGGAACGGAACG------TCGC--CTA-------------------
i cb4.chrX              I 576 C 0
s caeRem4.Crem_Contig0  1365045 118 -  4500979 -----------aactgaaaaaaaag-----agagaaaaattgcagaaagcGTTTTTCTAGGGTCAATTAACATTCGAGAGCAGCA----AGTCC---GTCTCTTAATCTATGCATCAAAACGGAACGGGGGCATCGC-TCCG-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   120206 140 +   386604 ---gtaaatgaaactgaagaagaagaagaaaaggaaaaattgcagaaaacgtttttctaaGGTCAATTAACATTCGGAAGCAGCA----AGTCC---GACTCTTAATCTATGCATCAGAATGGAACG-TCGCATCGT-TTCATCAAATAGTC---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2651279 142 +  4147112 ---GTAAGTGAAattaaagaagaag------aggaagaattgCAAAGCAT-TTTTTCTAAGGTCAATTAACATTCGAGAGCAGCA----AGTCC---GACTCTTAATCTATGCATCAGAAGGGAACG-TCGCATCGC-TTCAGCGAATACTCGTCCGACTA
i caePb3.Scfld02_0      C 0 I 110
e caeJap4.Scaffold17084  328298 1339 -   375229 I

a score=-10596.000000
s ce10.chrX             4417214 68 + 17718866 GCGATTCAGTCTGAAGGGAACGGGGAGACAATATAGAGG-----AGCTCTAGA---ATATAGC-----CGTATCAAAATAT--------------------
s cb4.chrX              9707554 83 + 21540570 ----------CgaatggaatgaaaaaaaagacgaaaagaTGCAAATGGATAAA---TTATATG-----TATACTAAATGATCGTTCTTCTTCGTTTCAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1365163 85 -  4500979 ----------CCGAGGGTAACCTAAAGATGATGAAACGGTTT--ATTGCtgaa---tttccagtttcttttATTCGAAAGTGGAGCCGCATTGAAT-ATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   120346 77 +   386604 --------GTCTTaaggaa----aaagatgatgCAAAGGTTA--ACCACAGAATTCTTTCTAG-----TTCCCTATAGGATTTTGTGACAGaaaat-----
i caeSp111.Scaffold622  C 0 I 14
e caePb3.Scfld02_0      2651421 110 +  4147112 I
e caeJap4.Scaffold17084  328298 1339 -   375229 I

a score=329.000000
s ce10.chrX             4417282 9 + 17718866 TATGGTTCT
s cb4.chrX              9707637 9 + 21540570 TATGGATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1365248 9 -  4500979 TTTGGACAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2651421 110 +  4147112 I
e caeJap4.Scaffold17084  328298 1339 -   375229 I
e caeSp111.Scaffold622   120423 14 +   386604 I

a score=-3334.000000
s ce10.chrX             4417291 5 + 17718866 CCTAT-----
s cb4.chrX              9707646 4 + 21540570 --AGTA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1365257 8 -  4500979 --AACAAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   120437 5 +   386604 -caaaa----
i caeSp111.Scaffold622  I 14 C 0
e caePb3.Scfld02_0      2651421 110 +  4147112 I
e caeJap4.Scaffold17084  328298 1339 -   375229 I

a score=-17490.000000
s ce10.chrX             4417296 333 + 17718866  
s cb4.chrX              9707650 441 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1365265 550 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   120442 572 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2651531 574 +  4147112  
i caePb3.Scfld02_0      I 110 C 0
e caeJap4.Scaffold17084  328298 1339 -   375229 I

a score=216065.000000
s ce10.chrX             4417629 404 + 17718866  
s cb4.chrX              9708091 532 + 21540570  
i cb4.chrX              C 0 I 404
s caeRem4.Crem_Contig0  1365815 439 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   121014 440 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2652105 425 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  329637 445 -   375229  
i caeJap4.Scaffold17084 I 1339 C 0

a score=356.000000
s ce10.chrX             4418033 16 + 17718866 AATGTGAAG--CAATTAG---------
s caeRem4.Crem_Contig0  1366254 16 -  4500979 aaggtgaac--caatttg---------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold622   121454 16 +   386604 aaggtgaat--aaattgg---------
i caeSp111.Scaffold622  C 0 I 222
s caePb3.Scfld02_0      2652530 18 +  4147112 aaggtgaaccaaaattgg---------
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17084  330082 15 -   375229 ------------AGTTTGTGCACCCAG
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9708623 404 + 21540570 I

a score=-5126.000000
s ce10.chrX             4418049 17 + 17718866 AATGG----------------------GTCTATTGAA---------CT
s caeRem4.Crem_Contig0  1366282 48 -  4500979 aattgaagaaaagaaagaaagaagaaagtcAATTGAAGTCTTGTTCCC
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0      2652561 41 +  4147112 aattg-------gaagaaaagtggaaaataaatGTCAATCGTGTTTCT
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17084  330097 18 -   375229 ----------------AATAGGTGTGAATGAACT--------------
i caeJap4.Scaffold17084 C 0 I 1365
e cb4.chrX              9708623 404 + 21540570 I
e caeSp111.Scaffold622   121470 222 +   386604 I

a score=3354.000000
s ce10.chrX             4418066 110 + 17718866 GAATTTGAAAACC---------TTTTGACATCGTACAAGAACATACTAGAGATAGAATCTTC-CAATTGTCAACACACCTCGATTCTTGGTTTCACTTGC-------------------------AAAGTATCTGCTTCTTCTTC--
s caeRem4.Crem_Contig0  1366330 115 -  4500979 ATGTTTACAAACCAAAAGGAGGTGTTGTAAACTTTTAGGAAGAGACCAAAGATAGAATCTCATTTGAagttttcacacttt---tcttg--TTCACTTCT-------------------------AGAAAAGGTGtccctttttc--
i caeRem4.Crem_Contig0  C 0 I 236
s caePb3.Scfld02_0      2652602 140 +  4147112 ATGTTTTTAAACCAAA--GGTGTGTTGTAAACGTTTGTGAACAGACCAAAGATAGAATCTTCTCAGAAGGTCTCACACTTC---TCTCG--TTCGCCTTTCCAGTTGGAGTGCTTAGAttgattcagaaaacaactcaTCATTCCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9708623 404 + 21540570 I
e caeSp111.Scaffold622   121470 222 +   386604 I

a score=1179.000000
s ce10.chrX             4418176 22 + 17718866 TCCTTGTATAATTGTTTTCGTT
s caePb3.Scfld02_0      2652742 22 +  4147112 GCTATGCAGAATTGTTTTCGTT
i caePb3.Scfld02_0      C 0 I 288
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9708623 404 + 21540570 I
e caeSp111.Scaffold622   121470 222 +   386604 I
e caeRem4.Crem_Contig0  1366445 236 -  4500979 I

a score=0.000000
s ce10.chrX             4418198 709 + 17718866  
e caePb3.Scfld02_0      2652764 288 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9708623 404 + 21540570 I
e caeSp111.Scaffold622   121470 222 +   386604 I
e caeRem4.Crem_Contig0  1366445 236 -  4500979 I

a score=600.000000
s ce10.chrX             4418907 19 + 17718866 TTTCACAACACTCATGCAC
s caeSp111.Scaffold622   121692 17 +   386604 TTCCACAAC--Tcatgaaa
i caeSp111.Scaffold622  I 222 C 0
e caePb3.Scfld02_0      2652764 288 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9708623 404 + 21540570 I
e caeRem4.Crem_Contig0  1366445 236 -  4500979 I

a score=2211.000000
s ce10.chrX             4418926 8 + 17718866 CTAAAAAT
s caeSp111.Scaffold622   121709 8 +   386604 ctaaaaat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2653052 8 +  4147112 CTAAAAAT
i caePb3.Scfld02_0      I 288 C 0
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9708623 404 + 21540570 I
e caeRem4.Crem_Contig0  1366445 236 -  4500979 I

a score=-3207.000000
s ce10.chrX             4418934  9 + 17718866 AACAAAACT------------------
s cb4.chrX              9709027  9 + 21540570 aacaaatct------------------
i cb4.chrX              I 404 C 0
s caeSp111.Scaffold622   121717 27 +   386604 aacaGACTCACTCAGAAAGACCTTACC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2653060 24 +  4147112 AACTACTTTCCAACGCAAG---CAACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e caeRem4.Crem_Contig0  1366445 236 -  4500979 I

a score=165740.000000
s ce10.chrX             4418943 600 + 17718866  
s cb4.chrX              9709036 569 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1366681 543 -  4500979  
i caeRem4.Crem_Contig0  I 236 C 0
s caeSp111.Scaffold622   121744 535 +   386604  
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2653084 562 +  4147112  
i caePb3.Scfld02_0      C 0 I 853
e caeJap4.Scaffold17084  330115 1365 -   375229 I

a score=83084.000000
s ce10.chrX             4419543 234 + 17718866 TAATAGAATAGATACAATCG------AG-GAGCTCGAGAAACATTTC---------GCGGCGGCTGTGCC----CAG---GA-AAAGGGCCAATTCGAACAAGAAAAAGGAAAAAAAAAGA------CAAGGCAT------------TGACATTGACGAAGC-GATGGAAGAAACTGACGATATGCAGACACACAC--------ACACTTACTCTTTGTAGCCATTTTTAGACATCTCCCACCGGATTTT-TGCAATTATGACGAG-CTTGAAACCTGATCTTACTT
s cb4.chrX              9709605 260 + 21540570 TAATAGAATAGATACAATCG---GCATGAGAGctcgagaaaaattttctgtcatCGTCGTCTGGAGCACTG---AAGAAAGG-AAAAGACCGATCCTACC------AGtagaaaaaaccga------aaagacTTTTTTAGCTAGGCTGACATTGACAGAGCAGGTGAA---AGCTGACGATAGACTGACAAAAGCGTGTACATGCATA-----GTTGTTGCCTATTTGGGACTTGTCCCTCCGGATTTTCCGCAATTATGACGAGCCTTGAAACCTGATATAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1367224 222 -  4500979 TAATAGAATAGATACAATCGAGAGCAAG-GGGCTCGAGAAACATTTT---------TCGTCGGGA---------CAGATAGA-GAAAGACCAACTCT--------------AAAAAAGCGG------CAAGCGTT-------TGGGCTGACATTGACAAAGC-GGTGTT---AGCTGACGATAGACAGACAAAGGC--------ACACT-----TTTGTTGCCATTTTCGGACATCTCCCTCCGGATTTTCCGCCATTATGACGAG-CTTGAAACCTGATATAACTT
i caeRem4.Crem_Contig0  C 0 I 460
s caeSp111.Scaffold622   122280 215 +   386604 TAATAGAATAGATACAATCA------AG-GAGCtcgagaaacatttt---------ttggcgGGA---------cggaaggagaaaaaaccgattct----------tgaaaaaaaaac--------gaaaattt-------tcgacTGACATTGACAAAGT-GTTTGA---GGTTAGCGATAGGCAGACACAGAC--------ATAC-------TTGTTGCCATTTTTGGACGTTTCCC-CCGGATTTT-TGCAATTATGACGAG-ATTGAAACCTGATATAACTT
i caeSp111.Scaffold622  I 1 I 332
s caePb3.Scfld02_0      2654499 231 +  4147112 TAATAGAATAGATCCAATCG------AG-GAGCtcgagaaacatttt---------ttgggggGAGCGGGGAGCTAGAAAGA-AAACGACAGACTCT----------------AAAAACGTCGGATAGAAAGTTT-------TGAGCTGACATTGACAAAGC-GGTGGAAGCGGCAATGGATAGGCAGACTAAGGC--------ATACT-----TTTGTTGCCATTTTTGGACGTTTCCCTCCGGATTTT-TGCAATTATGACGAG-CATGAAATCTGATATAACTT
i caePb3.Scfld02_0      I 853 I 360
e caeJap4.Scaffold17084  330115 1365 -   375229 I

a score=-2542.000000
s ce10.chrX             4419777 242 + 17718866 CCTCTC-----GGCTACCGATT---CAAAGGTTGAATAGTTACGGATCATTAGAA----AAGGTTGT-----------ACATATAATAATGAAAAACTCAAAAACCATGTCTATG---------------ATTTGTGTATC------GCAAAAGAAACTGTATT-------------ATATTACA-----------------------CAAAAAATATTGGACTGTGGTGATT---TTATGC-----ACATATTTCACAAATGCCAACTGTCAGGGACACTTTCCAAGATCTCCTCAATATTTTGGAGAGAGTGTAATTGGAATCACAGC
s cb4.chrX              9709865 306 + 21540570 TAGCCCCGAAGGACAGCGGATTACCTGGGGATAAACTTACTTTGAATCATTTGGAGTGCAAAGTTACTTCCGTCTCAGACATGCTGTCCTAgttgatttgaaattcattgTCATGCGTgggttcagaaaaattggagaacCAGAATGACAAATGACAACATATTTGTTTCCTAGCCAGTATTACGGGACAAGGGATGAAGTCTAAACCCAAAAGACATagagtaccggtcaataagatatgcaaaaaacgtatttttca---gccgATTGTCGGGCA---tttcga--------taaatttttt----------tagtctGTAGCACAGC
i cb4.chrX              C 0 I 189
e caePb3.Scfld02_0      2654730 360 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e caeSp111.Scaffold622   122495 332 +   386604 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=0.000000
s ce10.chrX             4420019 203 + 17718866 ccgacatctttcgggtttcgcgccggaatatgtttacctcgcagaggcgtagacctgtcacacaatatgttaatgctgcgcggagcccggtagatgtcggATCATAATATCTGGCATCATTCTGATTTTGAGTATTTTAGAAATTGTACGTCCTGGATTGGACTGGATTGCATAATTGGATTGTGTTATATGTGTTATATTGT
e caePb3.Scfld02_0      2654730 360 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9710171 189 + 21540570 I
e caeSp111.Scaffold622   122495 332 +   386604 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=158.000000
s ce10.chrX             4420222 174 + 17718866 TTTGTTGGAAAAATAAATACGTCAAGGACAATTTTCAATCAAGAAAACAACAG-ATGTATTTGTTGTAAGCCTAAAAAAATATACATACAACGTTTAATTTTAAAGTGGAGAATTGTTTTGAATAATAAGGGACACAATACACAAGTACCAAATATATTTTTGAATTTTGTAATG
s cb4.chrX              9710360 153 + 21540570 atagctgaaaaaataggaatttccgaaaaaatctgcaaatgcaaagttctcaatctgggtctgttttacaccctccaaaagcttcaaa------ttgaTCGGAAAATAGACAAT---------------GTGGC-CAAAAgtccactgaaaaatacgtttttcaaatatatggTA
i cb4.chrX              I 189 I 176
e caePb3.Scfld02_0      2654730 360 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e caeSp111.Scaffold622   122495 332 +   386604 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=0.000000
s ce10.chrX             4420396 171 + 17718866 AGTTTGAATGAGATTTGAAATTAGGAAAAAACAATGACTATTGCATAATCGGCAAAAACCGCGAACCATCTAGCACACCGCCCAAACAATTTCCCTTGAAAAATGAAGATCTAAGCTAGGAAGGTGACGACAAACCGCCGCAACTTTTGTTTTTTTTTCCCCAGTGAACAC
e caePb3.Scfld02_0      2654730 360 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e cb4.chrX              9710513 176 + 21540570 I
e caeSp111.Scaffold622   122495 332 +   386604 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=891.000000
s ce10.chrX             4420567 7 + 17718866 TTTGAAT
s cb4.chrX              9710689 7 + 21540570 TTTGAAC
i cb4.chrX              I 176 C 0
s caeSp111.Scaffold622   122827 7 +   386604 ttcaaaa
i caeSp111.Scaffold622  I 332 C 0
e caePb3.Scfld02_0      2654730 360 +  4147112 I
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=-2969.000000
s ce10.chrX             4420574 8 + 17718866 GGGAGGGA-----
s cb4.chrX              9710696 8 + 21540570 -----GGATGGGT
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold622   122834 8 +   386604 -aagtgaaa----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655090 4 +  4147112 -----gaaa----
i caePb3.Scfld02_0      I 360 C 0
e caeJap4.Scaffold17084  330115 1365 -   375229 I
e caeRem4.Crem_Contig0  1367446 460 -  4500979 I

a score=103054.000000
s ce10.chrX             4420582 539 + 17718866  
s cb4.chrX              9710716 579 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0  1367906 589 -  4500979  
i caeRem4.Crem_Contig0  I 460 C 0
s caeSp111.Scaffold622   122842 497 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655094 549 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  330115 1365 -   375229 I

a score=114810.000000
s ce10.chrX             4421121 199 + 17718866 AGAAACACTAAAA----------ACGGGCGAATGGCCCAC-TAAAAAAGAAACTA-----GG--CAGCCTGCCGAATTGGTCCCCAGAG----CCTGAAAGAACTCGAGTATCAACACTCATATAACAACACACACATAACATCATCAAAAA--GCATCGGCGCCGCTTT----GCTTCCGCCATTTGACAAAAGTTTTTGAGAC----GAATA------TTGTTGAGTTTT--TCATA
s cb4.chrX              9711295 192 + 21540570 ----------GAG----------AAAGCGAAAAGGcac-taaaaaaaagaaactatggaGAG--AAGCCTGTTGAATTGGTCCCGTGGGGGGAATGGAAAGAACTCGAGTATCAACACTCATATAACAA---ACACATAACATCATCTGAAAAGAC----ATGCCGCTTCAT--TCTTCCGCAATTTGACAATAG-TTGAAAAGC----Gaata--------ttttagtttt--tcata
i cb4.chrX              C 0 I 1295
s caeRem4.Crem_Contig0  1368495 185 -  4500979 ----------AAG----------ACAAGCAAAAGgcac-t-aaaaaaagaaacta-----gg--CAGCCTGTCGAATTGGTCCCCAGAG----CTTCGAAGAACTCGAGTATCAACACTCATATAACAA---ACACATAACATCATCTGAAA--GC----GTGCCGCTTCTTGAGCTTCCGCAATTTGACAACAGTTTGAGAAGc----aaata--------ttgagttttttgtcatA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   123339 198 +   386604 ----------CAAAGACAAAACTAAAACCAAATGGCGcac-taaaaaagaaacta-----gg--CAGCCTGTCGAATTGATCCCCAGGG----CTTTAAAGAACTCGAGTATCAACACTCATATAACAA---ACACATAACATCATCTAAAA--GC----GCGCCGCTTCTCGGGCTTCCTCAATTTGACAACagtttaaaaaga----aaagg----aaatttccAGTTTG--TCATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655643 191 +  4147112 ----------GAG----------AAAAGCAAATGgcac-t-aaaaaaagaaacta-----ag--cAGCCTGTCGAATTGATCCCTGGAG----GTTTGAAGAACTCGAGTATCAACACTCATATAACAA---ACACATAACATCATCTGAAA--GC----GCGCCGCTTCTTGAGCTTCCTCAATTTGACAACAgtttgaaagga----aaaagaagcaaatatCTAGTTTT--TCATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  331480 184 -   375229 --agacaagctaa----------aaaggcaaatggcac-t-aaaaaaagaaactg-----gTTCCAGCTTTTCGAATTGGTCCCCTGGG----TTCAACAGAACTCGAGTATCAACACTTATATAACAA---ACACATAACATTattttgag--gc----t-------------gctttcttttttgggaaacatttttgggagatttgtaaaa--------tttagaattt--tttta
i caeJap4.Scaffold17084 I 1365 C 0

a score=-4782.000000
s ce10.chrX             4421320 17 + 17718866 -T-------TCAAGTTATGGCTTTC
s caeRem4.Crem_Contig0  1368680 16 -  4500979 -TCAAAA--CCAACCCACT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   123537 10 +   386604 ---------TCAACTCACT------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655834 10 +  4147112 ---------TCAACCCACT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  331664 17 -   375229 tttaaaatttgaagttC--------
i caeJap4.Scaffold17084 C 0 I 867
e cb4.chrX              9711487 1295 + 21540570 I

a score=-1367.000000
s ce10.chrX             4421337 14 + 17718866 AACATTTTTCTTTG---------
s caeRem4.Crem_Contig0  1368696 12 -  4500979 --CGTTTCTTTTTG---------
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold622   123547 20 +   386604 --CTTTTATCCTAG-TCTACCAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655844 21 +  4147112 --CGTTTCAAATAGATCTgttag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I

a score=-2809.000000
s ce10.chrX             4421351 47 + 17718866 AAAACGTTTGGGAAGTTCAAATTGGGTTCGAGAAATTTGACACATGC
s caeSp111.Scaffold622   123567 15 +   386604 gcaa--------------------------agaaatgaaat------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2655865  8 +  4147112 aaaa--------------------------agaa-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I
e caeRem4.Crem_Contig0  1368708 26 -  4500979 I

a score=26456.000000
s ce10.chrX             4421398 277 + 17718866 TTCTA----AAAGAATAAAA-----TGAGGGGGCAC-----ACGA-ATCCAATTCTCACGGTATCCA--TAGCATTTTTGTTGGACCATT---ATTAATAAATGCTTATTGAATTGG-CTAAAACATGGAAAAAATATGAAAAGACAGACA-----TGAGAATTTTTTGTTATTAACTATGCATGTTCCTCCTTCCA-------AAATAAACGCATACAACA---TAATTTAATCAGATGCA---------TGACAAATTAGAGATAGAAACTAGAGACTTCCAGACTATTGAGTGAATTGGACAACAAAATAACAAGCCTA--
s caeRem4.Crem_Contig0  1368734 295 -  4500979 TTCTagatgaataaaaaaag-----tgtAGACAAAATGTTCATAACATT--CCCATTATGGTATCTGGGCAACATTC-------AACAATCCCATCATTAAACGTCCAttaaatagaaatagaaaaaagaaggaa----aaaaggcaGACAAACGTTATggcatttttgtaattatctATGCACGTTCCgtcttcca-aaaaagaagaaaacgcataaaaaa---taattcaataaaatgcATGTGGATGTTGACTAATTAGAGATAGAAAT---GGACCAGTGGACCAATATATGG--CAGACT--TGGAAAACAAGAACATA
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold622   123582 274 +   386604 ---------caaaaatgaaggaaaatcTATATGAAA-----ACGA-ATC--GGTTTGTTGGTATCCAAGCAATATTC-------AACATCGACATCGTTAAATATCCATTtataaga--------------ataa----aaaagacagaCAAGCGTTATGGCATTTCTATAATTATCCATGCACGTTCCGtcttccagaaaaagaataaaacatatgaaaaacaataattcaATGAGATACACGAGGGTGTTGACTAATTAGAAATAGAAAT---GGACCA-CGGACCAATAAATAG--TAGActaagaaaaaacagttcta--
i caeSp111.Scaffold622  C 0 I 217
s caePb3.Scfld02_0      2655873 236 +  4147112 ---------caaaaataaag-----tctAGATG------------------TTTCTTTTGGTATCCAAGCAGCATTC-------AACATATACACTATTAAAAGCATATTAAAGGGA----------GGGGAAGA----AAACGGCAGACAAGTGTTATGGCATTTTTGTAATTAGCTATGCACGTTCCCCCATccagaaagagaagaaagcccat---------taattcaataaaatacaTGTGGATGTTGTCTA-----AAATA--------GGACCATTGAAGcaaggaa-----------aatagaaaacaatacAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I

a score=885.000000
s ce10.chrX             4421675 16 + 17718866 TTCACATTAAACATGA
s caeRem4.Crem_Contig0  1369029 14 -  4500979 --TTTGGGAAACGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2656109 16 +  4147112 TTCATGTGATACAAGA
i caePb3.Scfld02_0      C 0 I 322
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I
e caeSp111.Scaffold622   123856 217 +   386604 I

a score=744.000000
s ce10.chrX             4421691 54 + 17718866 CTTAAAGTGTGT------ACAAACTCGGGAAATTGGAATGAAAAAGCTACTTTACTAGTT
s caeRem4.Crem_Contig0  1369043 60 -  4500979 CTAAAACTGTATTGCGAGGAATGTTCTAGAAGACTAAACGGAAAAACAACTATAAAAGTT
i caeRem4.Crem_Contig0  C 0 I 286
e caePb3.Scfld02_0      2656125 322 +  4147112 I
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I
e caeSp111.Scaffold622   123856 217 +   386604 I

a score=0.000000
s ce10.chrX             4421745 631 + 17718866  
e caePb3.Scfld02_0      2656125 322 +  4147112 I
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I
e caeSp111.Scaffold622   123856 217 +   386604 I
e caeRem4.Crem_Contig0  1369103 286 -  4500979 I

a score=1470.000000
s ce10.chrX             4422376 27 + 17718866 AGTTGGTGTTCATGTTAGATTAGCCCC
s caeSp111.Scaffold622   124073 26 +   386604 AGTTGCCGTTCAAGCTTGATGAA-ATG
i caeSp111.Scaffold622  I 217 C 0
s caePb3.Scfld02_0      2656447 22 +  4147112 AGTTGCCGTTCAA----GATGAA-ATG
i caePb3.Scfld02_0      I 322 C 0
e caeJap4.Scaffold17084  331681 867 -   375229 I
e cb4.chrX              9711487 1295 + 21540570 I
e caeRem4.Crem_Contig0  1369103 286 -  4500979 I

a score=2137.000000
s ce10.chrX             4422403 11 + 17718866 TTTTTGTCAGA
s caeSp111.Scaffold622   124099 11 +   386604 TTCTTGCCAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2656469 11 +  4147112 TTTTCGTCAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  332548 11 -   375229 TTTTTGCTTCT
i caeJap4.Scaffold17084 I 867 C 0
e cb4.chrX              9711487 1295 + 21540570 I
e caeRem4.Crem_Contig0  1369103 286 -  4500979 I

a score=39444.000000
s ce10.chrX             4422414 40 + 17718866 ATCAAAACATGATGCATATTAAATT-CAAACATGATTCATT
s cb4.chrX              9712782 41 + 21540570 ATCAAAACAAGATGCATATTAAATTAAAAGAatgattcatt
i cb4.chrX              I 1295 C 0
s caeRem4.Crem_Contig0  1369389 41 -  4500979 ATCAAAACAGGATGCATattaaatgaagaaaatgattcatt
i caeRem4.Crem_Contig0  I 286 C 0
s caeSp111.Scaffold622   124110 40 +   386604 ATCAAAACAAGATGCATATTTTATT-GGcaaatgattcatt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2656480 40 +  4147112 ATCAAAACAAGATGCATATTATATT-GGAAAATGATTCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  332559 40 -   375229 ATCAAAACAGGATGCATATTAAAAG-GAAAAATGATTCATT
i caeJap4.Scaffold17084 C 0 I 1555

a score=41213.000000
s ce10.chrX             4422454 167 + 17718866 -------GAGATAGACAGGAACCACACATGTTT-----------------------TCCA-TGG-GTACTATAGAAGA-----AG-GTTGAATGGA-----AATTAATTAGA--GAGCGGA------CCCTCCTAGATACTGATGCAAGATA---TTTTGCCACTCGCCCCCTCGCTTTTCATGTTTATTTTTTTGAATTCATTGGAATTAAATTGACTGA
s cb4.chrX              9712823 204 + 21540570 tgaaaatgagcTCTATTGAGTGCGGACCCTTTT------------CTTGATTGGGCACTA-CTG-ATGCAAAAGATTACTACTAATACTAGATGGGTATGAAATTAAttggatgaagaagaaaaaaacggataGAGATAGTGACGCTAGATAGATTCTATGCGCTCTCGCCCCCTCGCGaaatg-t--tttctttgaatttgcTGGAATTCAAATGACTGA
i cb4.chrX              C 0 I 768
s caeRem4.Crem_Contig0  1369430 192 -  4500979 taAAGA-GGGCTGTAT--GACCCAGACATTTTT-------GCCAGCTTGATTGGGTACCAGCCT-ACACTATAGATTACTACTGA-ATGAGACTGA-ACAAAATTAATTGGATGAAGAAGG-----------ATAGATAGTGATGCAAGATA---TTTGCTCGCCCCCTCCCTCgcttttcatgtt--tttttttgaattctttggAATTAAATTGAGTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124150 186 +   386604 tggaA--GGG----------TTTGGATAATCCCTCGATCAGGCTCCTGGACTCGGTACCA-CTGTGGACTATAGATGACTAGTAG-acggaatgaa---aaaattaattggatgaaaaaga-----------agagatagtGATGCAAGATA---TT----CACTCGCCCCCTCGCTTTtcatgtttatttttttgaattctttggAATTAAATTGAGTAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2656520 193 +  4147112 GGAAG--AGGCTGTATGGCCCTTAGGCAGTCCTTTTCACTGATGGCTTGATTGGGTACCC-C---GGACTATAGATGACTACTAG--TGGAATGAA---GAAATTAAttggatgaaaaaga-----------agagatagtGATGCAAGATA---TTC---CCCTCGCCCCCACGCttttcatgtttatttttttggattctttggAATTAAATTGACTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  332599 1555 -   375229 I

a score=-6942.000000
s ce10.chrX             4422621 61 + 17718866 CCAGCAGCA--------GTAGTA-GTCGCT-TTTTCAGTTGACTAGGTTTTC--------CTAAATAATGCTGACGTAT-----
s caeRem4.Crem_Contig0  1369622 77 -  4500979 TGAGTAGTAGTTAGAAATGAGCA-GTTTTTATTCTGAATAA----TGATTCTGACATACTCTAAGGgatataagttttttgt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124336 62 +   386604 TGAGTAA----------GGagta-ttttccattttcaattg----ggTTTTCTT-------GAATTAATGTCAGCTGCTGGcaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2656713 63 +  4147112 TGActag----------tgaatattttttcattttctattgaCT-AGTTTCCGTC-----CAAATGAATACTAA-----GGCAT
i caePb3.Scfld02_0      C 0 I 609
e caeJap4.Scaffold17084  332599 1555 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=-1100.000000
s ce10.chrX             4422682 27 + 17718866 ----------GTTTTTTTTC-----ACAATTTTGTTCATTTT
s caeRem4.Crem_Contig0  1369699 27 -  4500979 ----------tctcttttcc-----atcAGAATATTCATTTT
i caeRem4.Crem_Contig0  C 0 I 131
s caeSp111.Scaffold622   124398 40 +   386604 taatttcagaactaTTTCCCCGGAAGTGAGAACTGTTATT--
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2656776 609 +  4147112 I
e caeJap4.Scaffold17084  332599 1555 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=-8987.000000
s ce10.chrX             4422709 110 + 17718866 ----------------------GGACTTT-----------------------------------------ACTTAAG-----------------------------GCTATGCATGAC---TCAA----------ACTTT---TTA---GC----------------------------------ACAAAAATGTTCCAATTTCGA-----------------------------------ATAAAAGCTGACTAAAAAGATAAGACTAT-GAGTTAGAC-TTTCGACATTT
s caeRem4.Crem_Contig0  1369857 207 -  4500979 ----------------------GAACTCC-----------------------------------------Acacaaatagaaaaattatgcgagatgaaaaaa------atatatgacGTGTGAATAgcactttcacttt---ttaaacAC----CAGGGAGTTAACAGGAatgatattttaaaaataacaacCGTTCTGCTGATA------GGTCATAGTTGGAAGTGGCAA--AGATAGaggaaaataaatcaaaaaagaatggCTGTCGAGTTTTGC-TTTTGACATGC
i caeRem4.Crem_Contig0  I 131 C 0
s caeSp111.Scaffold622   124438 281 +   386604 GGGgttctctgaaaaacagaatgaaattcaaagaacaTGCTAGTAATAATAATTGCAGATTCATAAGAGTACGAAAATGGATAAAcaatgagagagaaatgaatgagttATGTATAAC---TGAATATTGTCCTTATATTGGATTGAGTGCGTGAAACGGAACAAACGAAAGAAATTTGAG----ACAACAACCTTCTTATTGATAGGTCATTGTGAAA----GGCGTGACaatttgagagaaagaaataaatcaaaaaagaatagcCGTcgagtttttcagtttgacaAGG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2656776 609 +  4147112 I
e caeJap4.Scaffold17084  332599 1555 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=19992.000000
s ce10.chrX             4422819 53 + 17718866 CTTGTC--ACTCC-AAAAAAGCATCAAT--CTTGTGGGGTTCAGCAC----------GAACGAGAGTG
s caeRem4.Crem_Contig0  1370064 67 -  4500979 CTTGTCCAACTCG-GAAAAAGCATCAATCCCCCGTTGGGTTCAAATCGACACGCGTCGAACGAGAgtg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124719 68 +   386604 CTTGtcaaactccaaaaaaagcaTCAATCCCCCGTTGGGTTCAACTCGGCACGCTTTGAACGAAACcg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657385 67 +  4147112 CTTGTCAAACTCC-GAAAAAGCATCAATCCCCCACTGGGTTCAACTCGGCACGCGTCGAACGAAACcg
i caePb3.Scfld02_0      I 609 C 0
e caeJap4.Scaffold17084  332599 1555 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=38785.000000
s ce10.chrX             4422872 250 + 17718866 ATTTCTATTTTATTCATGACCACTTCATCAAAAATTTTCAATCAAAA-----------ACTGA------------TGGAAAAGCAACATATGCGGGGCGA-------GGCG--GAACCTGAATTGGCTAGAAGAAAATGG-GatatatatatatatatatatgtatTTGGAACCACCAACACAAATTTTTTGACAAGATCGGATCGGT-GAGCTATAGTTGTTGAACAATTGATGTAAGA------CAAGC-TGTTGGGAAAATGAGAAGAAGGAAAAAGAAAAAAAAACA
s caeRem4.Crem_Contig0  1370131 174 -  4500979 atttctattttattcatGACCACTtcatcaaacattttcaatcagaa-----------attga-------------gaaaaggcGACATATTC-----AA-------AGCGCAAAACCGGAACCAAAACGTCAAAAA-------------------------------------GCACCTAGAAATCTGTTGACAG-----GATCGTTGGAGCTTT--------------------GTGA------CAGACATATTCGAG-------------TGGAACAATAAAAAAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124787 162 +   386604 atttctattttattcatGACCACTTcatcaaacattttcaatcaaaa-----------actga-------------gaaaaagcGACATATTCG----GA-------AGCAC-GAACCGGAACCAAAAAG-----------------------------------------------CACGAAAACCTGTTGACAGCAC--GATCGTC-GAGCCGT---------------------TCA------CAGGT-TTTCCGTC---------------Gaacaataaaaaagca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657452 157 +  4147112 atttctattttattcATGACCACttcatcaaacattttcaatcaaaa-----------actga-------------g-aaaagcGACATATTCG----AA-------AGCGC-AAACCGGAACCAGAAAG----------------------------------------------------GTGCCTGTTGACAAGAA--GATCGTT-GAGCATT---------------------TGA------CAGGT-TTTTCGaa--------------ggaacaataaaaaagca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334154 220 -   375229 atttctattttattCATGACCACttcatcaaaaatttccaatcaAAACGACGGGTTTgcctgaaaaatggaaacccaaaaaaactgcAT-TCCG----GATTGGATCGGTGT-GAATTGGATAGAAAGAGTGAGGGAGGGAGACGTTTG---------------------------------AAATCTGTTGACAA-----GATCTTT-GAGCAGC--------------------TTGAGCAGCTCGGGC-TGACCGGA-----ATTCGAAGGAGAAAGACaaaaaaaCG
i caeJap4.Scaffold17084 I 1555 I 22
e cb4.chrX              9713027 768 + 21540570 I

a score=3303.000000
s ce10.chrX             4423122 21 + 17718866 ATCGAACAATAAAAAATATTT
s caeRem4.Crem_Contig0  1370305 12 -  4500979 ATCGGAAAATA---------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124949 12 +   386604 aTTGGAAAATA---------T
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657609 12 +  4147112 atCGGAAAATA---------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  334374 22 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=12514.000000
s ce10.chrX             4423143 34 + 17718866 GGTAATTTCATAAAGCCAGTGAATAAT--------AGTCTTG
s caeRem4.Crem_Contig0  1370317 39 -  4500979 GGTTATTCCATAATTCTGGAAAGCAATTGTTC---TATTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   124961 42 +   386604 GGTAATTTCATAATACTCGAAAACAATTGTTCGAACGTCTAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657621 40 +  4147112 GGTAATTTCATAATCCTGGAAAACAATTGTTCG--CCGCTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334396 34 -   375229 GGTAATTTTATATTACTGAAAAACAAT--------TATCCAG
i caeJap4.Scaffold17084 I 22 I 98
e cb4.chrX              9713027 768 + 21540570 I

a score=3227.000000
s ce10.chrX             4423177 20 + 17718866 AATTGGTC-------TGACAAAGGCAG
s caeRem4.Crem_Contig0  1370356 27 -  4500979 CCTAAATATCCATTCTGACAAGAACAG
i caeRem4.Crem_Contig0  C 0 I 157
s caeSp111.Scaffold622   125003 20 +   386604 GCTTAGCA-------TGACAAAGAAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657661 20 +  4147112 ACTAGATA-------TGACAAAGGCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  334430 98 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I

a score=-1879.000000
s ce10.chrX             4423197 64 + 17718866 AT-----TACACTCGTGAAGCTCAATAATCAATTGAAGATCGTCTCTATATTTTTGGCCCGAATACATT
s caeSp111.Scaffold622   125023 46 +   386604 CTTGTGGTAGATTCCTGGTGCTTGAAAACCTA------------CATAAATT-----------TACCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657681 41 +  4147112 CTTTTCGTAGAGTTATAGtgttcaaaaatct-----------------tatt-----------gACTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  334430 98 -   375229 I
e cb4.chrX              9713027 768 + 21540570 I
e caeRem4.Crem_Contig0  1370383 157 -  4500979 I

a score=-8985.000000
s ce10.chrX             4423261 105 + 17718866 TTTAATAATCTAATATCTAATTATCACAATGAAAATT----TTTTTT------------TTAATTTG------ATTTTCAAAACT-CTCAGAGAAA--TATACAATAGAAGAAAAATTTTAAACTGGTAT
s caeSp111.Scaffold622   125069  76 +   386604 CTCGGAATTT--------------CTCAATGTAgata----actttt------------caaattgtgAAGAAATGTTTGTAACTACCGTAAgcag-----------caaaaaaaac-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2657722  87 +  4147112 Gttgaaaatc--------------cagaaagaaTATCTGGTATCTTC------------TGACTCTT------ACACTCAAAACTACTGTAAGAAACTTGAAGAATCCGAAAAAAGCAT-----------
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17084  334528 101 -   375229 TTGAATAATC-AGTA---------CTTGTTAaagagt----ttttttgttgtttaaaagTTAATTAT------tcaccaaaaact-caaaaaaaaaaaagaaagaactgaaaaaaattggga--------
i caeJap4.Scaffold17084 I 98 C 0
e cb4.chrX              9713027 768 + 21540570 I
e caeRem4.Crem_Contig0  1370383 157 -  4500979 I

a score=-2976.000000
s ce10.chrX             4423366 40 + 17718866 ATTAATTTTTTTTGTTGATGATTATGTGTGTTATTGCAAA---
s caeSp111.Scaffold622   125145 19 +   386604 atcagTTTCCA---------------------ATCGGATA---
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  334629 24 -   375229 -------------------aattgtgtttgacaaaaaaaacaa
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2657809 33 +  4147112 I
e cb4.chrX              9713027 768 + 21540570 I
e caeRem4.Crem_Contig0  1370383 157 -  4500979 I

a score=2238.000000
s ce10.chrX             4423406 14 + 17718866 TCGAAACAAAATTC
s caeRem4.Crem_Contig0  1370540 14 -  4500979 TCCGAACAAAGTTC
i caeRem4.Crem_Contig0  I 157 I 4
s caeSp111.Scaffold622   125164 13 +   386604 -CTGAAATAAACTT
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17084  334653 14 -   375229 cagaaaaaaaactt
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2657809 33 +  4147112 I
e cb4.chrX              9713027 768 + 21540570 I

a score=-536.000000
s ce10.chrX             4423420 6 + 17718866 TAAAAC
s caeRem4.Crem_Contig0  1370558 5 -  4500979 GAAGA-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   125178 6 +   386604 AAAAAC
i caeSp111.Scaffold622  I 1 I 38
s caePb3.Scfld02_0      2657842 6 +  4147112 CAAAAT
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17084  334667 4 -   375229 -gaaa-
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9713027 768 + 21540570 I

a score=-6856.000000
s ce10.chrX             4423426 51 + 17718866 ATTTTTTCTCAGAACACACAACT--------------------------TTCGCTGAATTTTCCGGAAATTTTGGTG
s caeRem4.Crem_Contig0  1370563 33 -  4500979 --ATCCACTCAACATag------------------------------------tttttgtttccagaagtt------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2657848 46 +  4147112 AAATCTAGCCAGAAAAG--aact--------------------------cacttcattttttctagaagcattc---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334671 71 -   375229 -----taccCCAACCAG-CAActgggagggagagagagagatttAACAAATCCACTTGTTTTCCAAAGTTGTTGGta
i caeJap4.Scaffold17084 C 0 I 4
e cb4.chrX              9713027 768 + 21540570 I
e caeSp111.Scaffold622   125184 38 +   386604 I

a score=-2234.000000
s ce10.chrX             4423477 3 + 17718866 -AGT
s cb4.chrX              9713795 3 + 21540570 -agt
i cb4.chrX              I 768 C 0
s caeRem4.Crem_Contig0  1370596 2 -  4500979 --gt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2657894 3 +  4147112 -aga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334746 3 -   375229 aaa-
i caeJap4.Scaffold17084 I 4 C 0
e caeSp111.Scaffold622   125184 38 +   386604 I

a score=122868.000000
s ce10.chrX             4423480 174 + 17718866 -GAAGAAAAAAAACAGT-AGACACATAC-TCACACAC-TTTCCAGCTAGATGTTATTTTAGGGTAGC-GGGTGG--ATAAAATGAGGCACTGCGTGCCCCTGGAGACTAATTTTTTGGATTTGTGCCAAAAATGTGGAATTGG--AC----ACAGAAAAGACA----------TAGAAAAAAGAGC--------------GCATGAGGCAA
s cb4.chrX              9713798 201 + 21540570 -caagaaaaaaaacagt-agacTAGaaaaaaaCCCGCGTTTCCTCATGGATGTTATTTTAGGGTAGA-GGGTGGAAATAAAATGAGCCACTGCGCGCCCCTGGAGACTAATCTTTTGGATTTGCGCCAAAAATGTGGAACTGG---t----agaaaaaagacaagaagaCAAGTAGAGACAGATGAATGTGAGCTATCTCGCATGAGGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1370598 180 -  4500979 -tgaaaataaaaacagtgaGGCAAAAACTGCACACAC-TTTCTCCATAGATGTTATTTTAGGGTAGA-GGGTGG-AATAAAATGAGGCACTGCGCGCCCCTGGAGActaattttttggatttgtgCCAAAAATGTGGAATTGG--AT----AGAGAAAAGACA----------CAGAAAAAGAGGG-----------CGTGCATGAGGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   125222 174 +   386604 -gaATAACCAAAACAGT------Ggtattccaaaaac-tttcCACATAGATGTTATTTTAGGGTAGGAGGGTGG-AATAAAATGAGGCACTGCGCGCCCCTGGAgactaattttttggatttgtgCCAAAAATGTGGAATTGGCACT----GAAGAAAagaca----------cagaaaaaagagc-------------gg-ATGAGGCAA
i caeSp111.Scaffold622  I 38 C 0
s caePb3.Scfld02_0      2657897 170 +  4147112 -aaaaaaagaaaacagt------ggTA--AAACACAC-TTTCCACATAGATGTTATTTTAGGGTAGG-GGGTGG-AATAAAATGAGGCACTGCGCGCCCCTGGAgactaattttttggatttgtgCCAAAAATGCGGAATTGG--AC----AGAGAAAAGACA----------TAGAAAAGAGAGC-------------GGCATGAGGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  334749 179 -   375229 aaagaaaagaaaacaaa--gaaaaacac-tGACACAT-TATCGTTATTGCCGCCATTTCAGAATAGA-GGGTGG-AATGAAATGGAGCACTACGCACCCCTGGAGActaattttttggatttgtgTAAAATATGCAAGATTGG--ACgggaaaggaaaagaaa----------ataaaagaaaaga--------------gaacaagaaaa
i caeJap4.Scaffold17084 C 0 I 1057

a score=12420.000000
s ce10.chrX             4423654 58 + 17718866 CAATTT-CTGGGTAACAG-ACAAGTGAAAGAGAGCGAAAGAGATAGACGAACCAAACTTG
s cb4.chrX              9713999 47 + 21540570 CATTT--CTGAGTAACCGAGAAAATGAGA---------GTAGAT--ACGAACCGAACTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1370778 47 -  4500979 CATTTG-TTGGGTAACTG-GAGAGCGAGA---------GAAGAT--ACGAACCGAACTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   125396 55 +   386604 CATTTTGTTGGGTAACAG-AAgggtgagagaga--gagagagat--acaGACCGAACTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2658067 44 +  4147112 CATTTT-CTGGGTAACA------CTGAGA-------AAAGAGAT--ACAAACTGAACTTG
i caePb3.Scfld02_0      C 0 I 575
e caeJap4.Scaffold17084  334928 1057 -   375229 I

a score=-2820.000000
s ce10.chrX             4423712 11 + 17718866 GAG-CACT---CAAT
s cb4.chrX              9714046  4 + 21540570 ----TAct-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1370825  4 -  4500979 ----TACT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   125451 11 +   386604 GGGCTCCCAGT----
i caeSp111.Scaffold622  C 0 I 509
e caePb3.Scfld02_0      2658111 575 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I

a score=1039.000000
s ce10.chrX             4423723  97 + 17718866 GTTTT-----------TTTTTTGTATTTTCTACACAGATGATGGAATGAGAAAC----AAACCAAAACTAAGAATTTTTGCTTAAAGATGGCAAAATTTAGAAAAAAAAATA
s cb4.chrX              9714050  75 + 21540570 ggttc-----------ttttttttat----------gaTGAAGCTATGATAAATC---TAGACAAACCCATAAAATAATGACAA--GAT-gcgaaaagtaca----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1370829 101 -  4500979 GGTTCGACAAGCTGGTTctttttgat----------gatgaagaaagaaaaaaatgaagagctagACATATAAAATTGTGACAAATGAT-GCAAAAAGTAGAGAAAGTGATA
i caeRem4.Crem_Contig0  C 0 I 729
e caePb3.Scfld02_0      2658111 575 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeSp111.Scaffold622   125462 509 +   386604 I

a score=-6434.000000
s ce10.chrX             4423820 670 + 17718866  
s cb4.chrX              9714125 423 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2658111 575 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeSp111.Scaffold622   125462 509 +   386604 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=476.000000
s ce10.chrX             4424490 5 + 17718866 ATTTA
s cb4.chrX              9714548 5 + 21540570 ATCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   125971 5 +   386604 ATTCC
i caeSp111.Scaffold622  I 509 C 0
e caePb3.Scfld02_0      2658111 575 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=17666.000000
s ce10.chrX             4424495 102 + 17718866 TCAGAACAAGGCTTGGTGAATCAGACATATA-CAAATTAAATTTGTCCGCTAGAACAGCCACAACATTGAAACAAAAACACATTCAATCATTAACACTATTTC------
s cb4.chrX              9714553  99 + 21540570 TCAAAACAA-GTATGGTGAATCAGTGCAGTGACCAATTGAATTCATTCGCAAGAACAActct---------ttgaaaaagttgttgcTACTCATTaccatctctttttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   125976  97 +   386604 TCAAAACAA-GAATAGTGAATCAGTGCAGAG-CAAATTAAATTTATTCGCTAGAACaactttcacttt---ttaaaaaacgtgtttttcaTTAACAC-GTCTC------
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2658686  96 +  4147112 TCAAAACAA-GCATGGTGAATCAGTGTGGTA-CAAATTAAATTCATCCGCTAGAACAACCtt--gctc---tcaaaaaatttgcctCTAATTAACACTATCCC------
i caePb3.Scfld02_0      I 575 I 285
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=-2803.000000
s ce10.chrX             4424597 45 + 17718866 CATTTGTTCTAAGATCCCTTAGGATTTAAAAATGCTTTTGGATGC----
s cb4.chrX              9714652 28 + 21540570 -----------tgtttggt----------gaAGGTTCGTAAATGCACTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   126074 36 +   386604 AATCTG---taagttttgtt----tcaaaaaacgttcg--AATGC----
i caeSp111.Scaffold622  I 1 I 213
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=255.000000
s ce10.chrX             4424642 24 + 17718866 GATATGTTGGTCATCAGGTTTTGT
s cb4.chrX              9714680 14 + 21540570 ----------TCGTCtttttttGT
i cb4.chrX              C 0 I 33
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeSp111.Scaffold622   126110 213 +   386604 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=0.000000
s ce10.chrX             4424666 29 + 17718866 TTTTGATTATGAATCATTTTCTGTGACTA
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e cb4.chrX              9714694 33 + 21540570 I
e caeSp111.Scaffold622   126110 213 +   386604 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=941.000000
s ce10.chrX             4424695 660 + 17718866  
s cb4.chrX              9714727 619 + 21540570  
i cb4.chrX              I 33 I 110
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeSp111.Scaffold622   126110 213 +   386604 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=0.000000
s ce10.chrX             4425355 113 + 17718866 CCCTACTGGGGCTCACAACTTTTGTTGACGAACATTTTTTGGTTTATTAAGATATTATTAAGAAGTGTAATTTTTGACTATATCAAAACATTATTAAAGTCTATAAACGTAGG
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e cb4.chrX              9715346 110 + 21540570 I
e caeSp111.Scaffold622   126110 213 +   386604 I
e caeRem4.Crem_Contig0  1370930 729 -  4500979 I

a score=91.000000
s ce10.chrX             4425468 1 + 17718866 A
s caeRem4.Crem_Contig0  1371659 1 -  4500979 A
i caeRem4.Crem_Contig0  I 729 C 0
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e cb4.chrX              9715346 110 + 21540570 I
e caeSp111.Scaffold622   126110 213 +   386604 I

a score=373.000000
s ce10.chrX             4425469 4 + 17718866 CATA
s cb4.chrX              9715456 4 + 21540570 CATA
i cb4.chrX              I 110 C 0
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I
e caeSp111.Scaffold622   126110 213 +   386604 I
e caeRem4.Crem_Contig0  1371660 0 -  4500979 C

a score=-581.000000
s ce10.chrX             4425473 5 + 17718866 TGTAG
s cb4.chrX              9715460 4 + 21540570 -GTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1371660 1 -  4500979 ----C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126323 5 +   386604 TGTTC
i caeSp111.Scaffold622  I 213 C 0
e caePb3.Scfld02_0      2658782 285 +  4147112 I
e caeJap4.Scaffold17084  334928 1057 -   375229 I

a score=48547.000000
s ce10.chrX             4425478  99 + 17718866 TACTAGCACA------------AAAAGAAAAAATGAACTTGTGAGGCACTAGAGAATGTATATTAAAAGAAGCACA-AGATCAAAGTCTT----CTTC--GCACTCCTT-------C-TTTACTCA
s cb4.chrX              9715464 123 + 21540570 TActagtgaagaaaaaaaaaggaaaagtgaTGA-GAACTTGTGAGGTACTAGAAAATGTATATTAAAAGACGTGTA-AGATCaaagttttcttcttctccttctccttcaaGCCTTC-TTTACTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1371661 113 -  4500979 GAATTTTGCACTAAAGCAAAAGAAAAGTGATGA-GAACTTGTGAGGCACTAGAAAATGTATATTAAAAGAAGCGCCTAGATCAAAGTTTT----TTCTCCTTACTCTTC-------T-TTTACTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126328  99 +   386604 TAGTAGTGTA------------AAAAGTGATGA-GAACTTGTGAGGTACTAGAAAATGTATATTAAAAGACGCACA-AGATCAAAGTTTC----TCCT--TTACTTTTC-------TCTCTACTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2659067  97 +  4147112 TAGTAGTGT-------------AAAAGTGATGA-GAACTTGTGAGGTACTAGAAAATGTATATTAAAAGACGGACA-AGATCAAAGTTTC----TTCT--TTACTTCTC-------T-TATACTCA
i caePb3.Scfld02_0      I 285 C 0
e caeJap4.Scaffold17084  334928 1057 -   375229 I

a score=126237.000000
s ce10.chrX             4425577 272 + 17718866 T-CTGAGTGG---CCATGAG------GAAAGGGAAAAAAGGAGTTAGA-GAATAG-GATA--------GATTCATGGC--TTGTATCACACGTCAC--CGTCTTCCGGAGTGTT---CACACGTCACAGTAAGCAAATTG-TGAGTCGAT-AAT---AAAAGAACAC-------AAAAACAGGAAGATATGA------GTCGA------GGAGAAGCATG-----T-CTAATACATGG-GGCCACTGTGACAGAAATTATGAAAGACAAATAAAAGGAAGAGAAGA-GAGGGAGGATGTGAAAAAGTGAT--AAACTTAATTAA----AAGAA--------ATGA
s cb4.chrX              9715587 304 + 21540570 TCCCGAGTG-----ccgaagaagaacaaaaaggagaagaagagttGGGTGAATGGCAATG--------GATACATGCCCACTGTCTCACACGTCAC--CGGTTTCCGGAGTGTTCATCCGACGTCACGTCACACACAGTA-AGAATCGAT-AAT---A-ATGAACACTGAGGAAGAAAACACAGATAGAAGATATGGGAAAGG------ATAGAGAAGTCTTCTAT-TTAATGAATGGCGGTTA-TTTGACGGAAATTATGAaagacatctgaaaatgagaatggaTGAGga--------ataaaatgagaaaaagtcAATTAA----GTGGGAGGAAAATATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1371774 261 -  4500979 T-CTGAGTG----TCCGAag------gaaggaaagaaaaagagttgga-GAATAG--ATG--------GATACATGGC--TTGTGTCACACGTCAC--CGGTTTCCGGAGTGTTC--CCGACGTCACAGTAAGCAAGTTG-TAGATCGAT-AAC---AGAAGAACAC-------AAAAACAGAtatagaaga-----gaaaga------gaagagacatC-----A-TTAATGAATGG-GCCTA-TATGACGGAAATTATGAAAGACACATGAAA--GAGAGCGGG-Gcaga--------agaaattgat--aaatttaatTAA----GCCGA--------ATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126427 263 +   386604 T-CTGAGTG-----CCTAAG------GAAAggagcaaaaaaagttgga-gaATAG--ATG--------GATACATGGC--TTGTGTCACACGTCAC--CGGCTTCCGGAGTGTT---CCGACGTCACAGTAAGCAAGTTGTAAGATcgat-aataaaa-aagaacac-------aaaaacaGATATGGAGTA------GAAGA------GAAGAGGCATC-----CGTTAATGAATGG-GTATA-TATGACGGAAATTATGAAAGAGATATAAAA--GAGAGTGAG-AAGGGA-------AGGGGGTGAT--AAATTTAATTAA----AGGGG--------ATGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2659164 261 +  4147112 T-CTGAGTG-----CCTAAg------taaaggag-aagaaaagttgga-gaatAG--ATG--------GATACATGCC--TTGTGTCACACGTCAC--CAGCATCCGGAGTGTT---CCGACGTCACAGTAAGCAAGTTGTAAGATCGAT-AAt---a-aagaacac-------aaaaacagaTATGGAAGT------GAAGA------GAAGCGACATC-----T-TTAATGAATGG-GTCTA-TATGACGGAAATTATGGAAGACATATGAAA--GAGAGTGGC-GAGGG--------AGGAAGTGAT--AAATTCAATTAAGAATGAGGG--------ATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  335985 270 -   375229 T-CTGATTGGcaagaagaag------agaagaaaaaggaaaagttgGA-GAATGG-AATGAGCATAAAGATACATGAC--TTGTGACACACGTCATGACACTTCCGGGAGTGTT---CCGACGTCACAGTAAGCAAGTTT-ATAATCGATAAAC---ACAAGAACAC-GCAAAAAAGAACGAATATGGAGAA------GAGGATGGGAGGGGGAGGAAAG-----C-CTAATTAATGA-ACTGA--ATGACGGATATTCTTCTAGGCACATG----------------------------GAGAACTGAT--AAATTCAATTATG---AAAAG--------ATga
i caeJap4.Scaffold17084 I 1057 I 1160

a score=11580.000000
s ce10.chrX             4425849 18 + 17718866 GTTACTAGAATTCCGGGT
s cb4.chrX              9715891 18 + 21540570 GTTACAGAAATTCCGGGT
i cb4.chrX              C 0 I 133
s caeRem4.Crem_Contig0  1372035 18 -  4500979 GTTACTGCAATTCCGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126690 18 +   386604 GTTACTTAAATTCCGGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2659425 18 +  4147112 GTTGCTACAATTCCGGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I

a score=2730.000000
s ce10.chrX             4425867 5 + 17718866 TATTA
s caeRem4.Crem_Contig0  1372053 5 -  4500979 TATTA
i caeRem4.Crem_Contig0  C 0 I 101
s caeSp111.Scaffold622   126708 5 +   386604 TATTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2659443 5 +  4147112 TAtta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9715909 133 + 21540570 I

a score=-501.000000
s ce10.chrX             4425872 18 + 17718866 CTTCGACGAGCCCGAACA
s caeSp111.Scaffold622   126713 18 +   386604 GTTGGTTGAAtgcaaata
i caeSp111.Scaffold622  C 0 I 138
s caePb3.Scfld02_0      2659448 16 +  4147112 gttggaaaaaatggaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9715909 133 + 21540570 I
e caeRem4.Crem_Contig0  1372058 101 -  4500979 I

a score=-3509.000000
s ce10.chrX             4425890 601 + 17718866  
s caePb3.Scfld02_0      2659464 502 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9715909 133 + 21540570 I
e caeSp111.Scaffold622   126731 138 +   386604 I
e caeRem4.Crem_Contig0  1372058 101 -  4500979 I

a score=-1090.000000
s ce10.chrX             4426491 19 + 17718866 --AAAAAACTGCACTCAACTC
s caeRem4.Crem_Contig0  1372159 19 -  4500979 aaaaaaaagcactTAGAAA--
i caeRem4.Crem_Contig0  I 101 C 0
s caePb3.Scfld02_0      2659966 15 +  4147112 -gagaaaacca---agaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9715909 133 + 21540570 I
e caeSp111.Scaffold622   126731 138 +   386604 I

a score=17743.000000
s ce10.chrX             4426510 60 + 17718866 ATCAAAAAAACATTTTAAAGTGGAA-------AATGGAAAA-GGAAACTCTTGGTTTTAGAAAT-TGGG-
s caeRem4.Crem_Contig0  1372178 70 -  4500979 ACGAGGAAACCAGTTTGAAGTGGAAAATGGATAATGGAAAATAGAAACTTCTGGTTTCGAGATTCTCCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126869 62 +   386604 ACCAAGAAACCATTTTCAAgtggaa-------aatggagaatagAAACTTctagtttcgaaaat-tccga
i caeSp111.Scaffold622  I 138 C 0
s caePb3.Scfld02_0      2659981 62 +  4147112 accaagaaaccattttcaagTGGAA-------AATGGAGAATAGAAACTTCTGGTTTcgcaaaa-ttcga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9715909 133 + 21540570 I

a score=75140.000000
s ce10.chrX             4426570 253 + 17718866 AAAGTGTGGATTAGAG------GAAAGTGGA--TTT-TAGGAGCTCAGAGTTCGCAAATA-GCTTCTTTGTCCTAACAGGGTTTGCAACTA-A-----------CTTTAACAAAG------TGACCCCCTT-----TTGTTAT---AGGC-AAGT----AGGAAGATC-GAA--CCGATAAACGAGTTGCGTAACGACTGAGAGAGAGAAAATGC-TCTCAAAATAGATATGTCTCATGTTATTTTTATC------CA-------------GTGCGACATTCACTTGTCGGCTTTTCGATATGAAG--GAAGTAGGTTT
s cb4.chrX              9716042 278 + 21540570 aaagtgaGGATTAGTAATCTCCGAAAGTGAA-TTCTATAGCAGCTCAGAGTTCGAAAATAGGCTTT-TTGTCCTAACAAGATTTGCAAGTAGAAGAAGTAGAAGCTGTCACCAAG------TATCTTCCTGCTT--TTGTGATTTAGGTC-GGTAACACAGCAAGAAC-GGAATTCGATAAA-------CGA---------GAAAGGGCTCTTTCTACTCAAAATAGATCCGcaaaatgctatttttaaCTCC---AGCACTCACAT----ACAC-GCACTTATC-----CAGTCTCgataagaaaatgaagaaaagtt
i cb4.chrX              I 133 C 0
s caeRem4.Crem_Contig0  1372248 264 -  4500979 AACGTGTGGATTAGTGGCTTGAAGAAGTGGA-TTTT-TAACATCTCAGAGTtcgtaaaca-ttttt-ttgtcctAACAagattttcaactc-aaaaactaG---------CCAAG------TGCCTTTTTCCCT-ATTGTGAT---AGCC-GGTG----AGGAAGAAC-GAA--CCGATAAACTAGTTGCGT---------GAGACGAC-------GCTCAAAATAGATCCACACAATGCTATTTTTAGCTTG---CACACGCACTCCACAACACTGCACTCGTC----GTTGTTTCGAtaggaagatgaaaaaaagtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   126931 290 +   386604 aaagtGAGGATTAGAG------GAAAGTGGATTTTT-TAGCAGCTCAGAGTTCGCAGAAA-GCATC-TTGTCCTAACAAGGTTTCCAACTC-AAACACTAACTTTTCTGACCGAgtctctcttccttcttttgtcATTTTGAT---AGCCGgggg----aaaaagaacaaaa--ccGATAAACGAGTTGTGT---------TGAATAGAGTAGCC-ACTCAAAATAGATTCTCACAATGCTATTTTTAACTGCAAGCACACGCACTCCACGGCACTGCACTCACTCTTCGCCGTTTCGATAAAAAGATGAAACAAGTTT
i caeSp111.Scaffold622  C 0 I 59
s caePb3.Scfld02_0      2660043 274 +  4147112 aaagtgagGATTAGGG------GAAAGTGGA-TTTT-TAGCAGCTCAGAGTTCGTAAAGA-GACTC-TTGTCCTAACAAGGTTTCTAACTC-AAACACTAACCTCTCTGAGCGAG------TGCCTTCTTTTGTCATTTTGAT---AGCC-GGTC----AGGAAGAAC-GAA--CCGATAAACTAGTTGCGT---------TGAGTCAATT------CTCAAAATAGAACTTGACAATGCTATTTTTAACTGCA--CACACGCACTCCACGGCACTGCACTCACTCTACGTCGTTTCGataagaagatgaaaaaagttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I

a score=318.000000
s ce10.chrX             4426823 3 + 17718866 TTG
s cb4.chrX              9716320 3 + 21540570 TTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1372512 3 -  4500979 ttt
i caeRem4.Crem_Contig0  C 0 I 57
s caePb3.Scfld02_0      2660317 3 +  4147112 ccg
i caePb3.Scfld02_0      C 0 I 71
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e caeSp111.Scaffold622   127221 59 +   386604 I

a score=77.000000
s ce10.chrX             4426826 3 + 17718866 GGT
s cb4.chrX              9716323 3 + 21540570 TGT
i cb4.chrX              C 0 I 1669
e caePb3.Scfld02_0      2660320 71 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e caeSp111.Scaffold622   127221 59 +   386604 I
e caeRem4.Crem_Contig0  1372515 57 -  4500979 I

a score=0.000000
s ce10.chrX             4426829 479 + 17718866 GTGCTCAACTTTCAAAGGGAGCCACAAGAAAACTAGACACTGGAAGAAGTTAATTTTACTGTTGGTCTAGGGGTACGCAAACAATTTTTGTAAACATTTTGGAAAAAAACAATTTCATAAAAATTTCCGAAATGTTACGGAAAGTAATTTTCAAAGCAATTTTTTAAACTGCGTAATTAGAGAAAAATTTTAAAAAAGATTAGTTCAAAACAGTTTTTCGATCACAGTGCTTATTTTTTGTAGGGCCTCTTTTGCTCTGAGATTTTTATTTTTATTTTTTGATTCTTGGAATAAACTGCCTAAAAGTTGGCATGTACAATTATATTGAAGTGATAAAGTAGCCATTCCCAGTAAAATATTATGACAGTAATCCGACATCTTGGGTTGCGTCCTGCAACTTGTTCTGTATTTTTCGTTGTTAAGGAAAATGTTCGCAACATTTTTCTACAATAACATGGCTCAATAGAACATTTTAAGAC
e caePb3.Scfld02_0      2660320  71 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I
e caeSp111.Scaffold622   127221  59 +   386604 I
e caeRem4.Crem_Contig0  1372515  57 -  4500979 I

a score=913.000000
s ce10.chrX             4427308 12 + 17718866 AAAAACGGGAAG
s caeRem4.Crem_Contig0  1372572 12 -  4500979 AAAAGTAGGAAA
i caeRem4.Crem_Contig0  I 57 C 0
s caeSp111.Scaffold622   127280 12 +   386604 AAAAGTTTGTAT
i caeSp111.Scaffold622  I 59 C 0
e caePb3.Scfld02_0      2660320 71 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I

a score=75826.000000
s ce10.chrX             4427320 548 + 17718866  
s caeRem4.Crem_Contig0  1372584 596 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   127292 601 +   386604  
i caeSp111.Scaffold622  C 0 I 198
s caePb3.Scfld02_0      2660391 587 +  4147112  
i caePb3.Scfld02_0      I 71 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I

a score=-555.000000
s ce10.chrX             4427868 4 + 17718866 CGAA-
s caeRem4.Crem_Contig0  1373180 4 -  4500979 -CAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2660978 4 +  4147112 -gaaa
i caePb3.Scfld02_0      C 0 I 377
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I
e caeSp111.Scaffold622   127893 198 +   386604 I

a score=758.000000
s ce10.chrX             4427872 35 + 17718866 GTTTCTTTGATTAAG--GGTCGTGGCAAACTTTAATG
s caeRem4.Crem_Contig0  1373184 37 -  4500979 GTTTATTCGAcagagatgatgatgatgaactTGATTG
i caeRem4.Crem_Contig0  C 0 I 320
e caePb3.Scfld02_0      2660982 377 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I
e caeSp111.Scaffold622   127893 198 +   386604 I

a score=0.000000
s ce10.chrX             4427907 1504 + 17718866  
e caePb3.Scfld02_0      2660982  377 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9716326 1669 + 21540570 I
e caeSp111.Scaffold622   127893  198 +   386604 I
e caeRem4.Crem_Contig0  1373221  320 -  4500979 I

a score=561.000000
s ce10.chrX             4429411 17 + 17718866 AGCAAACTTTCAAT---CAG
s cb4.chrX              9717995 20 + 21540570 AGCAATCTATCAGTTAACAG
i cb4.chrX              I 1669 C 0
e caePb3.Scfld02_0      2660982 377 +  4147112 I
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e caeSp111.Scaffold622   127893 198 +   386604 I
e caeRem4.Crem_Contig0  1373221 320 -  4500979 I

a score=604.000000
s ce10.chrX             4429428 4 + 17718866 TAAT
s caeRem4.Crem_Contig0  1373541 4 -  4500979 TGAT
i caeRem4.Crem_Contig0  I 320 C 0
s caePb3.Scfld02_0      2661359 4 +  4147112 TAAC
i caePb3.Scfld02_0      I 377 I 2
e caeJap4.Scaffold17084  336255 1160 -   375229 I
e cb4.chrX              9718015 0 + 21540570 C
e caeSp111.Scaffold622   127893 198 +   386604 I

a score=10288.000000
s ce10.chrX             4429432 22 + 17718866 ----ATAAAACAAGA-ATAACATACAT
s cb4.chrX              9718015 22 + 21540570 ----AAACATAGAGA-ATAACATACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1373545 27 -  4500979 ATAAGAACATGGAAAGATAACATACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   128091 22 +   386604 ----ATAGATGAAGA-ATAACATACAT
i caeSp111.Scaffold622  I 198 C 0
s caePb3.Scfld02_0      2661365 22 +  4147112 ----AAAACAGAAGA-ATAACATACAT
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  336255 1160 -   375229 I

a score=125125.000000
s ce10.chrX             4429454 215 + 17718866 CGGGTCTGATTGATAAATTGTCGA-TTCAGAGAACTAATCGTC---------GCTAGCACGTCAAAAAACTCGAAACACAATC----GAGATT-----------------GAGCAG-GTCAGTCGACACATGTTCCGTGCACCTATGTTGCCATTAATCTATTTTTATCG--TCAC-AAAGT--G--------------GGCAAAACGAAATAAAC-----------TCT--CAGCTCA--GCGGCGGACAAGACAACA-AGATGCTCAACACAATTAATCC
s cb4.chrX              9718037 215 + 21540570 CGAATCTGATTGACAAATGGTCGGACGCGGAGAACGACCCGGGGCAA--AAATCTAGCACATCAAAAAACT--------GATCCGAGTAGGTC-----------------AGTGTGTGTCAATCGCCACTTGTTTCGTGCACCTATGTTGCCATTAATCTATTTTTATCG--TCACTGAAGTAAG--------------AGAAGAGCAAAATAAAT-----------TCGCACAGCTCA---------ACAAGACAACGCCGATG----GGACAATTAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1373572 223 -  4500979 TGGATCTGATTGACAAATCGTCTT-TGCGAAGAACGACTCTTGCACATCAAAATTAACACATCAAAAAACTAG--GCGCAATCTGACAAGATC-----------------GAGGAG-GTCAGTCGCCACATGTTCCGTGCACCTATGTTGCCATTAATCTATTTTTATCG--TCAC-GGAGT--G--------------AGCAAAACGAAATAAAC-----------TCT--CAGCTCATCAC-----ACAAGACAACA-AGATGCTCAACACAATTAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   128113 213 +   386604 CGGGTCTGATTGACAAATCGTCGG-AGCGTAGAACGACGCTTC---------TTTAAcacatcaaaaaactca--gCGCAATCTGACGAGATC----------------CGAGGAG-GTCAGTCGCCACATGTTCCGTGCATCTATGTTGCCATTAATCTATTTTTATCG--TCAC-AAAGT--G--------------AGCAAATCGAAATAAAC-----------TCA--CAGCTAA--AC-----ACTAGACAACA-AAAGTCTCAATAGGAATTATTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2661387 211 +  4147112 CGGGTCTGATTGACAAATCGTCGG-AGCGGAGAACGACTTTTCT--------TTTagcaaatcaaaaaact-------caatctGATGAGATCG--------------GGGAGGAG-GTCAGTCGCCACATGTTCCGTGCACCTATGTTGCCATTAATCTATTTTTATCG--TCAC-GAAGT--G--------------AGCAAAACGAAATAAAC-----------TCC--CAGCTCA--AC-----ACAAGACAACA-AGATGCTCGACACAATTAATCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  337415 255 -   375229 CAAATCCAATTGATTTATTGGCAC-AACGAAGAACGATGA------------TCTAGCACATCAAAAAACCCAAGGCGTTATTTGATGCGATGATCGGAGAAAATGTTAAACGGAG-GTCAGCCGCCACATGTTCCGAGCTTTTATGTTGCCattaatctatttttgtcACTTGAT-AAAAT--GTGTTGGCtagaagaagcagaagaagaagaacaagaagcgccaacc--aagatca--ac-----agaagacaaca-aACTGATTGGCACCATTAATCC
i caeJap4.Scaffold17084 I 1160 I 1569

a score=-16252.000000
s ce10.chrX             4429669 182 + 17718866 -TGCACGGCTCAAAT---AT-AAATC----------TTCATTTTTCCCATTTTCAG---ATTTTCAGCTCTTTTGTGA-----GCAGGAAC----ATTTGAAGTTCACATTGGAGA-AACA-AGGAAAACA--------CAGAATCCGCGATAA------AAACCATTGATGG----------TGGAGCTATTCAAAATTTTATATATGCAAATGATTTATGGAAATTTTGTTAT
s cb4.chrX              9718252 178 + 21540570 -CCAATGGCTGAGCC---AAcaaatc--------------tttttgaattcttagaGACACTTTCAGTTCATACATCT-----GCTGAA------TTTGCTGATAGATGTT------AGCGGAGAGCAACG------------AAATGTGAAAACGTGGCAGAAAAAAGATAG--GGTGGAAAAAGGTCCCAGAAATATTTTGGA--------TGATTTATGCAAATTTGGTTAT
i cb4.chrX              C 0 I 221
s caeRem4.Crem_Contig0  1373795 194 -  4500979 -TGACCGGCTCAAAc---ag-aaatc--------------tctttt--ttttttgag--atttccagTTCATATAGCTCAGTGGCAAGA------ATTTTAAATAGACGTCTGcctgaacagaaaaaaacgtgtgtagactgaaaatgggaaaa------atgaagaggacGGTCGGAAGAGTAAGAGCTCAATGAGATTTTAGCT------TTTATTTATGTAAACTTTGTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   128326 127 +   386604 ------------------Gg-aaatc--------------ttttttaaattt-------------------tatgctt-----------------atttttaaaaggtGATAGCCT-AACAGAAGAAAACG---------------TGAGAGAA------CTGAAACAGGTTG--AGAGT-------TTGGGAAAAGATTTCAAG--------TAATTTATGGAAAtgtcgtttt
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2661598 189 +  4147112 TAGACCGGCTCATAAGAGAA-AAATCCCTTTTCTTCccgatttttgagattttcggg--ATTTA----TTATATGTTTCACGAATGAAAAAactgcttcgaaaaaaatggaggttt-tATA----AAAACG---------------TGGGTAGA------C-AAAATAGTTTA--AGAATA--AAGATCTAAACAAGCCTTCATA--------TGATTTATGGAAATTTTGTTAT
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17084  337670 1569 -   375229 I

a score=4949.000000
s ce10.chrX             4429851 69 + 17718866 CTTAGTGTGTGTGCTCCG--AAAGAA---TTGGAATGGTGGAAATGTGCATTT--TGTGAGTCGTGTTTGGGTGAA
s caeRem4.Crem_Contig0  1373989 67 -  4500979 TTCTCGGAC-ACACgttg--agaaaatatttgaatttcaaaaagggTGG------TGTGATTTGTGTTTTGATGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   128458 72 +   386604 cttcgcgTG-GTGGTTtggataaaaa---tggaaattcaaaaaaggtgCAGTCTGTGTGATTCGTGTTTTGGTAGA
i caeSp111.Scaffold622  I 5 I 260
s caePb3.Scfld02_0      2661796 65 +  4147112 CTCTACGCA-ATTCTttg--tggaaa---ttgaaaattcgaaaaggtGCAGTT--TGCTATTTGTGTTTTGGT---
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17084  337670 1569 -   375229 I
e cb4.chrX              9718430 221 + 21540570 I

a score=1394.000000
s ce10.chrX             4429920 9 + 17718866 CCATTTCTT
s caeRem4.Crem_Contig0  1374056 9 -  4500979 ACCTTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2661861 7 +  4147112 --ATTTCTT
i caePb3.Scfld02_0      C 0 I 313
e caeJap4.Scaffold17084  337670 1569 -   375229 I
e cb4.chrX              9718430 221 + 21540570 I
e caeSp111.Scaffold622   128530 260 +   386604 I

a score=-5447.000000
s ce10.chrX             4429929 709 + 17718866  
s caeRem4.Crem_Contig0  1374065 463 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
e caePb3.Scfld02_0      2661868 313 +  4147112 I
e caeJap4.Scaffold17084  337670 1569 -   375229 I
e cb4.chrX              9718430 221 + 21540570 I
e caeSp111.Scaffold622   128530 260 +   386604 I

a score=0.000000
s ce10.chrX             4430638 5 + 17718866 AAGTG
e caePb3.Scfld02_0      2661868 313 +  4147112 I
e caeJap4.Scaffold17084  337670 1569 -   375229 I
e cb4.chrX              9718430 221 + 21540570 I
e caeSp111.Scaffold622   128530 260 +   386604 I
e caeRem4.Crem_Contig0  1374528 1 -  4500979 I

a score=-44.000000
s ce10.chrX             4430643 15 + 17718866 AAAAATTTTTCAA--AA
s cb4.chrX              9718651 13 + 21540570 aaatattcttcaA----
i cb4.chrX              I 221 C 0
s caeRem4.Crem_Contig0  1374529 13 -  4500979 GAAAGTGTACCAA----
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2662181 15 +  4147112 aatgatgtttcaaaa--
i caePb3.Scfld02_0      I 313 I 17
e caeJap4.Scaffold17084  337670 1569 -   375229 I
e caeSp111.Scaffold622   128530 260 +   386604 I

a score=-34770.000000
s ce10.chrX             4430658 161 + 17718866 TTCGAAA-AGAAGCC---ACACAAAAGCTCATTCGGATGGTCATTCTCAGAAAGTTTT----------------------------TCATTTTTTGAATC---------AAACATTTC--TTTTTTAAAAACAAGACATTATTA-GTAGATGTTTG----------------------------------------ATGTTCTGGT-----TTATTTGGAAATGGA--TTTAAGA-----------------------GCTCAGAAAAAGTGCTG
s cb4.chrX              9718664 180 + 21540570 ----GAATAGAAGCC---AGATAATA-------------------------GATTTTT----------CAACATGCTCAGCCCCCAACATTTTTCCGATTCGGATCCAGTCTGAaaccaaactttgaaaaaaaa---attagat-caaGATCTTTGATCAAATCCTGACCCTTAATTATCTATAAA----------GTTTTCTGAG-------------CAATgatcttctggaa-----------------------attctga---gcaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1374542  67 -  4500979 ----GCA-ATGAGCC---A---------------------------------ACTTTT----------------------------gcaatctttcaatt---------------------ttctcaaaaaaa-----------------------------------------------catgtA----------TTTTTTGGAG------------ACAACGGT-------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   128790 194 +   386604 TCTGGAA-AGAAGCC---Ggataaaaaaggag-----------------gaggctttc----------caaagtt-----------tcatttctatAATTTTGGTCGAGAagaatttctgtttctgaaaaacaaaagatcATTTATTGGATGTTTGGTCAGTTCCTC-------------CATGAAATTAGGCATTATGTTC--ATTTGCATCACTT-GCAACTGATGTTTGgca-----------------------tttctaaaaaacaattg
i caeSp111.Scaffold622  I 260 C 0
s caePb3.Scfld02_0      2662213 221 +  4147112 TCTGGAA-AGAAGCCCCAATATTATAACTCAT-----------------GGGCGTTtcgtttcttctgaaaactt-----------ttattctcctatttttgtttaagaaacatttc-atctttgaaaaacagaagattaGTTTTTAGATGTTTGATCAATTCCG--------------AATGGAA---------ATGTTCCGATCAGTAGTAATT-AAAATGAATGTCTGAGAAGTTCACAAGCCACCCTCAAAGTTTTCCTAATTAAATTTG
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold17084  337670 1569 -   375229 I

a score=83377.000000
s ce10.chrX             4430819 538 + 17718866  
s cb4.chrX              9718844 509 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1374609 441 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold622   128984 416 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2662434 479 +  4147112  
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17084  339239 446 -   375229  
i caeJap4.Scaffold17084 I 1569 C 0

a score=0.000000
s ce10.chrX             4431357 10 + 17718866 GCCAGTTAGA
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e caeJap4.Scaffold17084  339685  0 -   375229 C
e cb4.chrX              9719353  3 + 21540570 I
e caeSp111.Scaffold622   129400  0 +   386604 C
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=-5289.000000
s ce10.chrX             4431367 113 + 17718866 -AAATCATTAAAAAAAACTTTTCCAATGGTGTTCAAATAACTAAAATATGTAATAAAACTTTTCTAAAGTTTTTGAAAAATTTATTATTAGTAAAAAGTGGAGAAACCTGAAAT
s cb4.chrX              9719356  18 + 21540570 -aaagcat-----------------------------------------------------------------------------------------------aaacttgaaat
i cb4.chrX              I 3 I 5
s caeJap4.Scaffold17084  339685  27 -   375229 CAAATgat-------------------------------------------------------gcaaaatttttgaagaatt--------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2662913  31 +  4147112 I
e caeSp111.Scaffold622   129400   0 +   386604 C
e caeRem4.Crem_Contig0  1375050  30 -  4500979 I

a score=0.000000
s ce10.chrX             4431480 4 + 17718866 ATAA
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e caeJap4.Scaffold17084  339712 0 -   375229 C
e cb4.chrX              9719374 5 + 21540570 I
e caeSp111.Scaffold622   129400 0 +   386604 C
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=65.000000
s ce10.chrX             4431484 24 + 17718866 AACACTGCTGCATGTTCAAACTTT
s caeSp111.Scaffold622   129400 24 +   386604 aaaactgTTGAATCTTCATACTGC
i caeSp111.Scaffold622  C 0 I 8
s caeJap4.Scaffold17084  339712  9 -   375229 -------atGAATGTT--------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e cb4.chrX              9719374  5 + 21540570 I
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=0.000000
s ce10.chrX             4431508 15 + 17718866 TTGATTGATTACACC
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e caeJap4.Scaffold17084  339721  0 -   375229 C
e cb4.chrX              9719374  5 + 21540570 I
e caeSp111.Scaffold622   129424  8 +   386604 I
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=-3192.000000
s ce10.chrX             4431523 50 + 17718866 TGCAAAATTTCTGAAAACTGAGTTTTCATTTTGGCTCGAAATAAAATTTT
s caeSp111.Scaffold622   129432 19 +   386604 ------ATTTCTGGAAAACGA-------------------------TTAT
i caeSp111.Scaffold622  I 8 I 27
s caeJap4.Scaffold17084  339721  6 -   375229 ------------GAAATA--------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e cb4.chrX              9719374  5 + 21540570 I
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=0.000000
s ce10.chrX             4431573 61 + 17718866 TTCAAGTTTTTTTTGAAAAATAATGGTTTCTTGCATGGCCTTACTCCACCTCTAACCATAA
e caePb3.Scfld02_0      2662913 31 +  4147112 I
e caeJap4.Scaffold17084  339727  0 -   375229 C
e cb4.chrX              9719374  5 + 21540570 I
e caeSp111.Scaffold622   129451 27 +   386604 I
e caeRem4.Crem_Contig0  1375050 30 -  4500979 I

a score=92347.000000
s ce10.chrX             4431634 92 + 17718866 CCTTACCCATATTTAGCGAAATTCGTCCACATCTTTGTCATCAAGTCGAGCATTGCTCTGTCCGATTCGTTGTACCGGTAGTTGAACACAAT
s cb4.chrX              9719379 90 + 21540570 --ttaccCGTATTTGGCAAAATTGGTCCACATTCTGGTCATCAAGTCGAGCATTGTCTTATCCGCCTCATTGTACTTGTAATTGAAGACAAT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1375080 92 -  4500979 CCTTACCCATATTTTGCAAAATTCGTCCACATTCTTGTCATCAAGTCTAGCATCGTTTTGTCAGCTTCATTGTACTtgtaattgaaaacaat
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold622   129478 92 +   386604 TCTTACCCATATTTGGCAAAGTTAGTCCACATTCTAGTCATCAAATCAAGCATTGCTTTGTCTGCTTCATTGTATTTGTAGTTGAAGACAAT
i caeSp111.Scaffold622  I 27 I 2
s caePb3.Scfld02_0      2662944 92 +  4147112 GCTTACCCATATTTGGCAAAATTGGTCCACATTCTTGTCATCAAGTCAAGCATAGCTTTATCTGCCTCATTGTATTTGTAATTGAAGACGAT
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17084  339727 91 -   375229 -CCAACCCATATTTGGCAAAGTTGGTCCACATTTTTGTCATCAAGTCTAGCATAGCTTTGTCGGCATCATTATAGCGGTAATTAAATACAAT
i caeJap4.Scaffold17084 C 0 C 0

a score=466.000000
s ce10.chrX             4431726 2 + 17718866 GG
s cb4.chrX              9719469 2 + 21540570 TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375172 2 -  4500979 tg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2663036 1 +  4147112 -G
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  339818 2 -   375229 AG
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622   129570 2 +   386604 I

a score=44934.000000
s ce10.chrX             4431728 48 + 17718866 AGACACCAAAAATGTATGCGAGCTCGGTGCAATGTGTAGCAGCTGAAA
s cb4.chrX              9719471 48 + 21540570 ATACTCCGAAAATGTAAGCGAGTTCTGTACAGTGAGtagcagctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375174 48 -  4500979 aaactccaaaaatgtaTGCGAGTTCGGTACAGTGAGTGGCAGCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   129572 48 +   386604 AAACTCCAAATATATAAGCAAGTTCTGTACAATGAGTGGCTgctgaaa
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2663038 48 +  4147112 ACACTCCAAAGATATACGCCAACTCGGTACAATGTGTGGCTGCTAAAA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17084  339820 48 -   375229 AGACACCAAAGATGTAGGCAAGCTCAGTGCAATGTGTGgccgctgaaa
i caeJap4.Scaffold17084 C 0 I 60

a score=-12879.000000
s ce10.chrX             4431776 21 + 17718866 --------TTTCCAATG------TATAAGCAACTA
s cb4.chrX              9719519 32 + 21540570 -aaaacgttGATAAAATAGTCT-TTATGATTTA-G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375222 32 -  4500979 TTAACCAGTTTTGTAAGAATCTATCTTGGTTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   129620 27 +   386604 --------atttggattcagcACTTTTACTGAACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2663086 21 +  4147112 --------TTCGGGACG------TTCTAAAGAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  339868 60 -   375229 I

a score=54090.000000
s ce10.chrX             4431797 74 + 17718866 CACAA--------ATAAGTTCCTCTACCTCGGAATGGAGCTCGGAGTGAGAGGATACCAAAGCTTCGAGGGTTACAGTAATC
s cb4.chrX              9719551 66 + 21540570 GATAT--------GTA--------TACCTCTGAATGGAGCACGAAGTGAAAGAATTCCGAAGCTTCTTGGATTACAGTAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375254 65 -  4500979 -ACAA--------ATG--------TACCTCTGAATGGAGCACGAAGGGAGAGAATTCCAAAACTTCTTGGATTACAGTAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   129647 66 +   386604 GAAAA--------TCA--------AACCTCTGAATGGTGCACGAAGAGAAAGGATTCCGAAGCTTCGTGGATTACAGTAATC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2663107 74 +  4147112 CAGAAAGGCTAACACA--------TACCTCTGAATGGGGCACGTAGAGACAAGATTCCAAAACTTCTTGGGTTACAGTAGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  339928 74 -   375229 tACAA--------TTTGATTACGATACCTTTAAATGGAGCACGAAGCGAGAGGATTCCAAAGCTTCTTGGGTTACAGTAATC
i caeJap4.Scaffold17084 I 60 I 2

a score=1386.000000
s ce10.chrX             4431871 2 + 17718866 GA
s cb4.chrX              9719617 2 + 21540570 GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375319 2 -  4500979 GA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   129713 2 +   386604 GA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2663181 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  340002 2 -   375229 I

a score=94898.000000
s ce10.chrX             4431873 93 + 17718866 AGGAGTACATGAACACTTTGTTTCCAAGTTTTGTCATCTTTTCCGCATAGTTATAGGTTCCATTATTGACAAACAGGTCGCTGTACAACTGAA
s cb4.chrX              9719619 93 + 21540570 AGGAGTACATGAAAACTTTGTTGCCCAGCTTAGTCATCTTCTCCGCATAATTATAGGTGCCGTTATTCACAAATAAGTCGCTGTACAActaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375321 93 -  4500979 ATGAGTACATGTAAACTTTATTTCCAAGTTTTGTCATCTTCTCTGCATAGTTGTATGTACCATTATTCACGAATAAGTCGCTGtacaactgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   129715 93 +   386604 ACGAATACATGAAAACTTTGTTTCCCagttttgtcattttttcagcgtAGTTATAAGTTCCATTATTTACAAATAAGTCGCTGTACAACTGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2663183 93 +  4147112 ATGAGTACATGAACACTTTGTTTCCCAGTTTGGTCATTTTCTCGGCATAGTTGTAGGTTCCATTATTTACAAACAAGTCACTGTACAGCTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  340004 93 -   375229 AAGAGTACATGAAAACTTTGTTGCCCGCTTTGGTCATCTTTTCAGCGTAATTGAAGGTCCCATTGTTCACAAAAATATCGCTGTACAACTGAA
i caeJap4.Scaffold17084 I 2 C 0

a score=1336.000000
s ce10.chrX             4431966 2 + 17718866 AA
s cb4.chrX              9719712 2 + 21540570 aa
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0  1375414 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2663276 1 +  4147112 -A
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17084  340097 2 -   375229 AA
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622   129808 0 +   386604 C

a score=1286.000000
s ce10.chrX             4431968 8 + 17718866 TTGAAAAT
s caeRem4.Crem_Contig0  1375416 8 -  4500979 tttaagat
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2663284 8 +  4147112 tttgaaat
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17084  340099 0 -   375229 C
e cb4.chrX              9719714 36 + 21540570 I
e caeSp111.Scaffold622   129808 0 +   386604 C

a score=587.000000
s ce10.chrX             4431976 24 + 17718866 AAAACATTTTGCATTCAGATTCAA
s caePb3.Scfld02_0      2663292 21 +  4147112 aa---actcTGCATTGCGAGTCAA
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  340099  0 -   375229 C
e cb4.chrX              9719714 36 + 21540570 I
e caeSp111.Scaffold622   129808  0 +   386604 C
e caeRem4.Crem_Contig0  1375424  3 -  4500979 I

a score=0.000000
s ce10.chrX             4432000 260 + 17718866 TAACATTAGGGGTACAAAAAGAGTTGTGCGGCAAATTTTTCAAATAATATTTTATCAACAACCAATTACTCTATCTCAAAAATTCATTTAAAATCATTCTTATGAACATATAGAAACCCGAAAATGGTCAAAAATTGGTTGATTTTTTGAAATTGTGACCTTGTTTTTGTAAGTATTAAAATATCATAGTGAAAATTGAAGCGCATATGGTTTTCAAAATTTTCTATCACACTCGCAATTTAGAGGTGTACTATAGAAGT
e caePb3.Scfld02_0      2663313   2 +  4147112 I
e caeJap4.Scaffold17084  340099   0 -   375229 C
e cb4.chrX              9719714  36 + 21540570 I
e caeSp111.Scaffold622   129808   0 +   386604 C
e caeRem4.Crem_Contig0  1375424   3 -  4500979 I

a score=-293.000000
s ce10.chrX             4432260 21 + 17718866 TGGATGCACTGTATAGGAAGT
s caeJap4.Scaffold17084  340099 21 -   375229 GGGAATAACCGTTAGACCCGT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663313  2 +  4147112 I
e cb4.chrX              9719714 36 + 21540570 I
e caeSp111.Scaffold622   129808  0 +   386604 C
e caeRem4.Crem_Contig0  1375424  3 -  4500979 I

a score=-3401.000000
s ce10.chrX             4432281 71 + 17718866 ATTCATCAATTTCAAATCAACGAGATTTTACAAAACTAACAGTGACGCCATACTGTTAGGATATCATTTTT
s caeSp111.Scaffold622   129808 23 +   386604 ATGTATCAATTGTAa------------------------------------------------tcttttgt
i caeSp111.Scaffold622  C 0 I 2
s caeJap4.Scaffold17084  340120 23 -   375229 ATTTATAAAT-----------GTGATTCTGAAAA-------------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663313  2 +  4147112 I
e cb4.chrX              9719714 36 + 21540570 I
e caeRem4.Crem_Contig0  1375424  3 -  4500979 I

a score=-1408.000000
s ce10.chrX             4432352 15 + 17718866 TTGTACAATTTAATT
s caeRem4.Crem_Contig0  1375427 15 -  4500979 TTACACAATATAACT
i caeRem4.Crem_Contig0  I 3 I 14
s caeSp111.Scaffold622   129833 13 +   386604 ttttgaaGTACTG--
i caeSp111.Scaffold622  I 2 I 1
s caeJap4.Scaffold17084  340143  6 -   375229 -TATACA--------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663313  2 +  4147112 I
e cb4.chrX              9719714 36 + 21540570 I

a score=0.000000
s ce10.chrX             4432367 1 + 17718866 T
e caePb3.Scfld02_0      2663313 2 +  4147112 I
e caeJap4.Scaffold17084  340149 0 -   375229 C
e cb4.chrX              9719714 36 + 21540570 I
e caeSp111.Scaffold622   129846 1 +   386604 I
e caeRem4.Crem_Contig0  1375442 14 -  4500979 I

a score=232719.000000
s ce10.chrX             4432368 282 + 17718866 TACCTGAATATAACCCCTTGCAGCAACTTCCTTGTCATCTTCATCATCCGACAACTTTTTCAAATACATCTTCTTTGCTTCTTCTCGCAGCGCTTCAAAGTCCTCGTGATTTTCCTCAGTTATCAAAAGAGCCAACAACTTGTCAATTCCTTTTTCGTCAAAGTTACTTGGTCCGAGACTAGC------------AAA--------------------------------------------TAACAA-------TCCTTCATGCTCACAAGTTCCGACCATTATATTTTTCTTCGGCGCTTCTTTTCTTAATTCTTCAATGGATTTCGGAAGAAAATCGCTTGG
s cb4.chrX              9719750 327 + 21540570 TACCTGAATATATCCTCTGGCGGCTACCTCTTTGTCATCCTCATCCTCTGATTCCTTCTTGAGATACATtgtttttgcttcttctctcAATGCTTCGAAATCCTCATGGTTTTCCTCAGTGATCAAGAGAGCCAGTAGTTTGTCAATTcctttttcatcaaaattgctGGGTCCGAGACtagctaaaaatttga-aat----------ggtATTAGTCCCTC------TAGATTTCCTGAT-TACCAAAAAGGAGTCCCTCGTGCTCACAAGTTCCGACCATTATGTTCTTTTTGGGTGCTTCCTTTCGGAGTTCTTCTATTGACTTTGGAAGAAAATCACTCGG
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1375456 329 -  4500979 TACCTTAATATATCCTTTTGCTGCTGCTACCTTATCATCctcatcttctgaatccttcttCAAATAGATTTGTTTGGCTTCCTTCCTCAAATCTTCAAAGTCTTCATGATTTTCTTCAGTGATCAAGAGTGCCAGCAACTTGTCGATTCCCTTTTCATCAAAGTTGCTTGGCCCAAGACTGGCTGAAAATATCT-AATAAATT-Cctcagttttagtt--------------ttttctggTGTACCAAATAGCAGCCCTTCGTGTTCACAGGTGCCGACCATTATATTCTTTTTTGGGGCTTCCTTTCTCAGTTCTTCAATACTCTTTGGAAGAAAATCACTCGG
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold622   129847 330 +   386604 TACCTGAATATATCCTCTGGCTGCTGTCTCTTTGTCATCCTCATCTtcagtttcctttttcaagtACAATTTCTTTGCCTCTTCTCTCAACGCTTCAAAGTCTTCATGGTTCTCCTCGGTTATCAAAAGAGCAAGAAGTTTATCAATTCCTTTCTCATCAAAGTTGCTAGGACCAAGGCttgctagaaaaaa---agt----------attctcagaaatgttttca-agtGATGTTAGAT-TACCAAAAAGAAGTCCTTCGTGCTCACAAGTTCCAACCATTATGTTCTTCTTTGGTGCTTCTTTTCTTAGCTCTTCAATTGACTTCGGAAGGAAATCGCTTGG
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2663315 326 +  4147112 TACCTGAATGTAACCTCTTGCTGCTACTTCcttatcatcttcttcttcagattcttttttcaaatacaatttCTTGGCTTCCTCTCTCAAAGCTTCAAAGTCTTCATGATTTTCCTCTGTGATGAGAAGAGCCAATAGCTTGTCAATTCCTTTCTCGTCAAAATTACTAGGCCCGAGGCTAGCTGAAAACAACAGAAT----------GAGACCCGGAatgt------aatatttttca---taCCGAAAAGAAGTCCCTCATGTTCACAGGTTCCGACcattatattcttttttggtgCTTCCTTTCTCAATTCCTCAATTGACTTTGGAAGAAAATCACTGGG
i caePb3.Scfld02_0      I 2 I 1
s caeJap4.Scaffold17084  340149 344 -   375229 CACCTGAATATATCCACGTGCGGCTACTTCTTTATCGTCTTCATTTTCCGATTGCTTTTTCAAGTACAATGATTTTGCTTCTTCCCTTAATTCACCAAAGTTTTCATGATTTTCCTCAGTAATCAGAAGAGCCAAAAGCTTGTCAATGCCTTTCTCATCGAAATTAATTGTTCCCAAACTAGCTGAAATAAATGAAGTTTACTATTTTGCTACCACTCTCTTTTCTATAAATAGCTGTGCT-CACCAAAGAGCAGTCCTTCGTGTTCGCAAGTGCCCACCATTATATTCTTTTTCGGGGCTTCCTTCCTCAATTCATCAATTGGTTTTGGCAGGAAATCGCTTGG
i caeJap4.Scaffold17084 C 0 C 0

a score=476.000000
s ce10.chrX             4432650 1 + 17718866 C
s cb4.chrX              9720077 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375785 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   130177 1 +   386604 C
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  340493 1 -   375229 C
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663641 1 +  4147112 I

a score=122387.000000
s ce10.chrX             4432651 144 + 17718866 TTGGAGCCAATGACGGGGGCCAAATCAAGTCCAATTTTAGAGACATCAACTCCTTTCCTAGTGAGTAGCCTTTTTTCGAATTCCCGCTCTTTCCTGGTGCGAAGAAACTCTAACATGCTTTCACTGGCGTTTTCGTCTAAAAA----------A
s cb4.chrX              9720078 144 + 21540570 TTCGTTCCAATGACTGGTGCAAGATCAAGTCCGATTTTGGAGACATCAACACCTTTTCTAGTGAGCAATCTCTTCTCAaactctttctctttcttggTTCGTAAGAAGGCTAACATGCTTTCACTTGCATTTTCATCTGGAAC----------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375786 154 -  4500979 TTGCTTCCGATGACTGGTGCCAAATCGagtccaatttttgagacgTTAACACCTTTTCTAGTGAGCAATCTTTTCTCAAACTCTTTGTCTTTCTTTGTTCGGAGGAATGCAAGCATGCTCTCACTGGcgttttcatctgaaactgGTATTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   130178 144 +   386604 TTAGTTCCGATTACAGGAGCCAAATCGAGCCCGATTTTCGAAACGTCAACACCTTTTCGTGTAAGTAGTCTTCTTTCaaactctttctcttttttggttcGAAGAAATGCGAGCATACTTTCACTTGCattctcatctgaaaa----------a
i caeSp111.Scaffold622  C 0 I 62
s caePb3.Scfld02_0      2663642 144 +  4147112 TTGGTACCAATGACTGGGGCTAGATCCAAACCAATTTTGGAAACATCCACACCTTTTCTCGTGAGCAATCTCTTCTCgaattccttttctttctttgtgcGAAGGAAGGCAAGCATGCTCTCACTAGCATTCTCATCTGAAAT----------A
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold17084  340494 144 -   375229 TTGTTGCCAATAACAGGTGCTAAATCAAGCCCGATCTTTGAGACGTCCACACCTTTTCGTGTCAGAAGGCGTTTCTCGAATTCCTTCTCTTTTTTGATTCGAAGAAAAGCTAGCATACTTTCACTGGcattttcgtctgaaaa----------t
i caeJap4.Scaffold17084 C 0 C 0

a score=-9024.000000
s ce10.chrX             4432795 22 + 17718866 TAAAAAG------------TGAGGTTCACATGA----G
s cb4.chrX              9720222 23 + 21540570 AAATAAGAA----------TGATGTCATAATCA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1375940 31 -  4500979 TAACAAAAACTGTATCTGCTGATGTAACAA--A-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2663787 18 +  4147112 -------------------TAATATGttcatcatgaa-
i caePb3.Scfld02_0      I 1 I 56
s caeJap4.Scaffold17084  340638 22 -   375229 taataaaga----------aatagcatacatt------
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622   130322 62 +   386604 I

a score=-6354.000000
s ce10.chrX             4432817 33 + 17718866 -CTCC----AAACTTAAAAAATTAA----CTAATTCAAATAT
s cb4.chrX              9720245 13 + 21540570 -TTCC-----------AAACGACA-----------------C
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1375971 33 -  4500979 -TTCCGATGAAGTTTGAAACAACA------TAAAACAA--GC
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold17084  340660 36 -   375229 ttttc----aattttgatgTGATAGTTCTCTAGTTTAATC--
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663805 56 +  4147112 I
e caeSp111.Scaffold622   130322 62 +   386604 I

a score=-680.000000
s ce10.chrX             4432850 12 + 17718866 AAAACTCCATCT
s cb4.chrX              9720259  7 + 21540570 AAAACCA-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1376005  7 -  4500979 AAAACCA-----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   130384  7 +   386604 AAAACTA-----
i caeSp111.Scaffold622  I 62 C 0
s caeJap4.Scaffold17084  340696  2 -   375229 ----CC------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2663805 56 +  4147112 I

a score=638834.000000
s ce10.chrX             4432862 1137 + 17718866  
s cb4.chrX              9720266 1313 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1376012 1193 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   130391 1140 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2663861 1167 +  4147112  
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold17084  340698 1086 -   375229  
i caeJap4.Scaffold17084 C 0 C 0

a score=2019.000000
s ce10.chrX             4433999 7 + 17718866 ACCTGAA
s cb4.chrX              9721579 7 + 21540570 ACCTGAA
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0  1377205 7 -  4500979 ACCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   131531 6 +   386604 ACctga-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2665028 4 +  4147112 ACCT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  341784 0 -   375229 C

a score=-4166.000000
s ce10.chrX             4434006 22 + 17718866 ATGGTACCAATAAAATG------AAATT-------
s caeRem4.Crem_Contig0  1377212 11 -  4500979 ------------------------TAATCGAGTGg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   131537 28 +   386604 ataatgaaaaaaacatgttatgaaaaat-------
i caeSp111.Scaffold622  C 0 I 15
s caePb3.Scfld02_0      2665032  5 +  4147112 -----------------------AAAAT-------
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17084  341784  0 -   375229 C
e cb4.chrX              9721586 47 + 21540570 I

a score=-669.000000
s ce10.chrX             4434028 25 + 17718866 CTAATAGGTGGGAAATAATTGATAA----
s caeRem4.Crem_Contig0  1377223 23 -  4500979 --attatgagaaaaataaataataa----
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2665039 15 +  4147112 --------------ATAGATCATCAAAGA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17084  341784  0 -   375229 C
e cb4.chrX              9721586 47 + 21540570 I
e caeSp111.Scaffold622   131565 15 +   386604 I

a score=-396.000000
s ce10.chrX             4434053 48 + 17718866 CTATGCATATGGTGATAAAATTACTAAGTGCTAAAATAGGAATTTTTC
s caePb3.Scfld02_0      2665054 29 +  4147112 ACATG---------------TTATTAAACAATAATCTAA----TTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  341784  0 -   375229 C
e cb4.chrX              9721586 47 + 21540570 I
e caeSp111.Scaffold622   131565 15 +   386604 I
e caeRem4.Crem_Contig0  1377246  4 -  4500979 I

a score=0.000000
s ce10.chrX             4434101 291 + 17718866 AGTTTTTTTTTGAAAATTTTGCACTAGATATCGTGATTtccaatgtactcttgcatgttttaacccaaacaatgttgagatataaaaacttaaaacataacaagaacataaacttgaagaaaacacatttttgatccattacttccaaaagaattggtgaaaactgagtttgacttgaaaaaattaattttccaacttttttgagaagttttgataggtcatttcaatttttaaaatcataggaattgtttttaatagttcccccactagcggtactccacttttCAGAAA
e caePb3.Scfld02_0      2665083   0 +  4147112 C
e caeJap4.Scaffold17084  341784   0 -   375229 C
e cb4.chrX              9721586  47 + 21540570 I
e caeSp111.Scaffold622   131565  15 +   386604 I
e caeRem4.Crem_Contig0  1377246   4 -  4500979 I

a score=5.000000
s ce10.chrX             4434392 14 + 17718866 AATGTTAAAGCCAA
s caeRem4.Crem_Contig0  1377250 14 -  4500979 AATGTGTGATTCTC
i caeRem4.Crem_Contig0  I 4 C 0
e caePb3.Scfld02_0      2665083  0 +  4147112 C
e caeJap4.Scaffold17084  341784  0 -   375229 C
e cb4.chrX              9721586 47 + 21540570 I
e caeSp111.Scaffold622   131565 15 +   386604 I

a score=75383.000000
s ce10.chrX             4434406 103 + 17718866 ACCTGTTTACTTGGAGTTAGATTACTTTCGTTATGATGTCGCAGCGATATGAATGAAATGACACCACCCATCTGTAAT----ACAAAATAGAAAAAT---TTGAAGTTAG-----------
s cb4.chrX              9721633 100 + 21540570 ACCTGTTTACTCGGAGTTAGATCTCTTTCGTTGTGATGTCGTAATGAGATGAAGGATATTACACCGCCCATCTGAAAA-AAGC--GAATAGAATAACATGATG------------------
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0  1377264 100 -  4500979 ACCTGTTTACTTGGAACCATATGACTCTCATTATGATGTCGCAATGAAATGAAGGATATTACACCacccatctgaaaataagtcaGAATTGAATAAC---ATG------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   131580 100 +   386604 ACCTGTTTACTCGGAGTTAGATGACTTTCATTATGATGTCGCAACGAGATGAAGGATATTACACCACCCatctgaaatggaaaaataattgaataac---ATG------------------
i caeSp111.Scaffold622  I 15 C 0
s caePb3.Scfld02_0      2665083  94 +  4147112 ACCTGTTTACTCGGAGTTAGATGACTTTCGTTATGATGTCGCAATGAGATGAAGGATATTACACCACccatctgaaat------aaaattgaataac---atG------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  341784 104 -   375229 ACTTGCTTGCTCGGCGTGAGATTGCTCTCGTTGTGATGTCGCAAGGATATGAAGGATATTACACCTCCCATCTGAAAT-------AATACAAATAAA---ACG-------TGTAAAGTTGG
i caeJap4.Scaffold17084 C 0 I 165

a score=-5768.000000
s ce10.chrX             4434509 71 + 17718866 CTCAAAAATTCATAAATTCGATCTCAAAACAGAAAA---CAAAACACGA---CACCATACTGAGCGAT-----GAGCCCAAC
s cb4.chrX              9721733 33 + 21540570 -TCTAAAAC------------------AAGAGAAC-------------------------AGAAGAGT-----CGGGACTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1377364 52 -  4500979 -TCTAGAAT------------------AAGAAAACA---CGATGAACCA---CACAAAATAGAGCATT-----TGGACCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   131680 60 +   386604 -TCtagaat------------------atcaaaaaa---caatgcattctaaaaaggaagagagtaacaagaagaagaagaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2665177 51 +  4147112 -TCTAGAAT------------------GCCAAAGAAAgccaacac-------aaaaaaagggaGCATT-----GGAGCCAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  341888 165 -   375229 I

a score=-1302.000000
s ce10.chrX             4434580 5 + 17718866 -AAAGA
s cb4.chrX              9721766 4 + 21540570 -TGGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1377416 5 -  4500979 -AAGAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622   131740 5 +   386604 -aaaga
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2665228 5 +  4147112 -AAGAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17084  342053 5 -   375229 gaaaa-
i caeJap4.Scaffold17084 I 165 C 0

a score=910.000000
s ce10.chrX             4434585 1 + 17718866 A
s cb4.chrX              9721770 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   131748 1 +   386604 a
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2665236 1 +  4147112 A
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  342058 1 -   375229 a
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1377421 5 -  4500979 I

a score=148831.000000
s ce10.chrX             4434586 397 + 17718866  
s cb4.chrX              9721771 466 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1377426 433 -  4500979  
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622   131749 440 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2665237 450 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  342059 419 -   375229  
i caeJap4.Scaffold17084 C 0 I 2546

a score=30560.000000
s ce10.chrX             4434983 121 + 17718866 TAGAAA----------------------------ACAGAGCAGTATGTGC-----------TGTAAGTTTTGAC-------ATTGATTGTACAGTGAACGCTGATTGGTTTTGATTTTTTTTTTTC------------AAAAGCAAATAGTGA------TGCTGTTATCGGTTCCAATAAAAAGC---
s cb4.chrX              9722237 152 + 21540570 TGGAAAGTGTCTGagcgaattcaaaaaaagggaaaaaaagagaaaaa--------------taaaaatgttta--------gtGGAATGTGAAGGGAACGCTGATtggttttgatattttgcatttGACACTGTGAAAGAGAGCAAATACTGT------TATTGGTATAGCTTT--------GAGGGC
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1377859 142 -  4500979 TAGAAAGTgtc----------------aagagaaaaagagcgaaAAAG-------------TATGTGTGTCGACTTGAC--ATGGTTTGTCAAGTGAACGCTGATTggttttgatatatt---ttt------------gagagCAAATACAGTTATGGCTATTGGTATAGCTTTCCACAATAAACAGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   132189 130 +   386604 TAGAAAGTctc------------gaatggaaaagaaataggaaaaagt---------CGTTTTCGTGTGTTGAC------------TTGTAAAATGAACGCAGATtggttttgatattt----ttc------------gagaGCAAATACAGT------TATTGGTATAGCTTTCCACATTGAAT---
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0      2665687 151 +  4147112 TAGAAAGTatc------------aagtatgaaaaaaagaggaaaaaaggagaaaaaacgttttcgtGTGTTGACTTGACATATAGTTTGTAAAGTGAACGCTGAttggttttgatattt----ttc------------gagAGCAAATACAGT------TATTGGTATAGCTTTCCACAATAAAC---
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold17084  342478 2546 -   375229 I

a score=-3167.000000
s ce10.chrX             4435104  9 + 17718866 --------CAACAGAAT---------------
s cb4.chrX              9722390 13 + 21540570 CAA-----CATTTGCACT--------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1378002 18 -  4500979 CAAAACTCCACTTGCACT--------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   132330 25 +   386604 -------CAATTTGCACTCGTTCTTATTTGAA
i caeSp111.Scaffold622  I 11 C 0
e caePb3.Scfld02_0      2665838 39 +  4147112 I
e caeJap4.Scaffold17084  342478 2546 -   375229 I

a score=25314.000000
s ce10.chrX             4435113 250 + 17718866 -------------------AAGATCATAAATTGTG-------GGATACTG---------GGAA--GGTGGGAA-GAAGGGAAAAGGAAAAAATGA--------------------A---TGAAAAAG--GAAACTGACAAAC-AG--CTCAAATTTCGGTA--CTGG---------ACGGCTGATTCACCGTTTTGTTTGAAATATCACACCA----CAAGAATCAGCGTCAT------GTCTTCGAGGGGAAGGAAATGTTATAGAACTCGATA---TGTTCCATAAATGGAA--GTTA--------TCGAATTTT-----------------AATGTTTCT--------------------GAGACACAA-----ACAAGATAAG--C-------TGGT
s cb4.chrX              9722403 340 + 21540570 AACAACTTTTCTACATAAAA-------------------------TATTATTCATATATCAAATAGTTCTTAAcagcagaaaaaagagaacataGTGGTCAAAAACCGGAAATGTACCCTAGAGAAAATAAAACAG--AAAC-AACTCTCGAATTT--------CGGCGAAATGCAAATGCTGATTCAccattttgtttgaa---------------aaaaaatcagcatcATCATGACGTTTGTGCacacaaaaagttg----aaaaatgaagagg-gA---GAACGAGCCTAGTATCCTTAACTGGTGGAAATTTGAGATGTTCTGAATGAAAAAGTTTCTGGTCtcaaagaagcaaaaagaaaacaccAACAGCACAAGATAAG--CTCCCCGTCAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1378020 310 -  4500979 CGTTTCGTTCTTATTTGAAAAGACGAGACCGTGTT---------CTGTGACTGAACGATAAAACGGGT------Gggaggagaaaagaaaaatag------aaaactaaaaatata---tgtagaaa--aaaacag--aaac-ag--cTCGAATTTCGGTA--ACGGCGAAATGCAAATGCTGATTCAccattttgtttgaaatatcACACCCCTAGAGAGAATCGGCATCATCATGACGTTTTT---TACaaa---ctg----gaaaatgaagagC-CACTCCAAAGAGAGAAAtgtattta-----taaaaattg---------cgaaaaaaaaagtttct-------------------gaagaCACCA-----ACAAGATAAG--C-------CAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   132355 263 +   386604 -------------------AAGATGAGCCATGGTT-------GGGTGTGA---------AGAACAGGCCccag-gagagaaaaaagggaaactag------------------aca-------------aaaacag--aaac-ag--cTCGAATTTCGGTAACAGAGGAAAATGCAAATGCtgattcatcattttgtttgaaatatCACA-CC----CGAAAATCGGCATCATCATGAcgtttag-aaga-aaaaaactg----gaaaataggCACTTGACTCCATAGaagga---attt--------cgaaaaact-------------ggaaaacgTTTCC-------------------AAAGACACCA-----AGAAGATGAACCC-------CAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2665877 265 +  4147112 -------------------ATGATCGGACATTTTGAGGAAGAGGGTGTGA---------AGAACAGGATACAT-AGAGGGAGgcggaaaaactgg--------------------a-------------aaaacag--aaacgaG--CTCGAATTTCGGTA--AGGGCGAAATGCAAATGCtgattcatcattttgtttgaaatatcACACCC----CGAGAATCTGCATCATCGTGAcgttttg-aacagaaaaaactg----aaaaatgaa-----gattccAAACAtgggaatattt--------tgaaatttg-------------agaaaaagtttct-------------------gaagaaacca-----ACAAGATAAG--C-------CAGC
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17084  342478 2546 -   375229 I

a score=56472.000000
s ce10.chrX             4435363 148 + 17718866 GGGCTCT-----CTGAGCCCTGAACAGCTGTGTGCG----CTGTCTTC-ACTCAAA---ACGCATAACGTTCGCCTAGTTGCTCG----------AGATTTT-----TCGCTCT-GT------CGTTCTGCGCTCGCGCCGAATTACGCACTCTC-------------GGT-TTTTGATC-GGAAG----AGATTATGGCGA
s cb4.chrX              9722743 172 + 21540570 -GGCTCT-----CTGTGTTCCAAACAGCTGTGTGTGGTCTCTCTCATCGCCTCAAG-----ACACAACGTTCCCGAGGT-----GAGGAGCTCACAGATTTTTGTGCTCTTTCT-ATCCCTCTCACTCTGCGTTCGCACCGAAATGCACACCCTCGTTCTTGCACCCagactttttgatt-------------ttatgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1378330 161 -  4500979 -GGCTCTTTTCCTTTTGCTCTGAACAGCTGTGTGTGGGCTCTTTC----TCTCAAGAAGACACATAACGTTCGTTCGGTTGCTCGAGG-------AGATTTT-----TCTCTAT-GTC-----CACTCTGCGTTCACCCCGAACAACACActctc-------------aactttttgatc-GGAAG----AGATTATAGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   132618 157 +   386604 -GGCTCTGTCT-TCTCGCCTCAAACAGCTGTGTGTGGGCTTTCTTGCC-TCTCAAG---ACACATAACGTTCGTTCCATTGCTCCg---------agatttt-----tctctctcgg------CCCTCTGCGTTCACGCCGAACAACACACTCTC-------------GAT-TTTTGATC-GGAGA----AGATTATGGCGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2666142 151 +  4147112 -GGCTCTCT-------GCTTTGAACAGCTGTGTGTGGGCTTTC-CGTC-TCCCAAG---ACACATAACGTTCGTTCCGTTGCTCCG---------AGATTTT-----TCACTCT-GT------CACTCTGCGTTCACACCGAACTACACACCCTC-------------GACGTTTTGATCGGGAGG----AGATTATGGCGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  345024 144 -   375229 GGGCTCA-----TTGGAC---AGACAGCTGTGTGT---------CTCC-CTCCGAG---ACACATAACGTTCGCCCAGTGGCGTG----------AGATTTT-----TGTTGGT---------TTCTCTGCGCTTGTCTC--ACTACTCACTCTT----------CCCGATTTGCTGATC-GAGAGGTCCAGATTATTATGA
i caeJap4.Scaffold17084 I 2546 I 1403

a score=51918.000000
s ce10.chrX             4435511 353 + 17718866 GTTGGTGAAAAGTTCCAGGCCAAGTTTTGAATATATAATTGC---CGACT--CACACAT--------CATTCACTGCGTGAAC-----AAACATTGTGACAAAGCAAAGAAACGAATTT----CCAAATAAGTAACGACTCGGAGCAAACCAATTAGCACATCGCAA-GAGGAGAG---------AGAACAAAACAGAAAACATGTTTTTCACG-TAGAGACAAAA----------AATAAACCATGAA-ATCCTTTG-AAATTTATATCAAAGTCAGAAAAAGACAACGGA-AAATATAGTGATAAG-------------TTGACTCATGG--A-------AAAAAACC---------GTCTTTGAAAAC-----CGGGTGATGCAAATGGTCAGAAAGTAAATA-----AGAATTTCGAAATAGAGCAA-------TGACTAATA
s cb4.chrX              9722915 349 + 21540570 G-----------TGAC-----------TGAATGTATAATTGCCAACAATTTCTAGACGGGATCACATCAtcca--aagaaaacaaaaaaaacaactttttggaGCTT--CGACAGCTCT---------AAAAAAGTGACT-------GATCAATTAGCgc--gggag-aagaaaaagagaatactAGAATGAAA-AAACAACATGTTT-TTATG-TGTCAAGAACGGGAACGTCTCTGAAAATCATGGA-ATTTGT-------------------------AGGGCGACCAAAAAATGTATCTG-GAGTGGGCGGATGAATTTGAGTCATCATTGCtgcgaagaaaaaaa---------attatcgacGAT------------TTTAAATGGTCAGAAAGTAAACATggttggaatttcgaaa-taagTAAA-GACCATGACTAACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1378491 380 -  4500979 G-----------TTCCTCGCCAAGTTTTGAATATGCAATTGCATTCAAATTAAAGGCAT--TCGCATCATTC-----GTTCACACAAAACATGTTGGTTTTGGTTTTAACTAAAGCtgtttcttccaaaaaaaagtgactcGGAGCAAACCAATTATCGCAtaggga-atgaaaaa---------aaaaggaga-ggaaaacatgttt-ttctg-tGAGAAGG-----------CCTGAAAATCATGGA-ATTTGTAT-GAATCTT-----CAGTCAG-AAAAGACAACAAATATATGTATTGATGAGTGGGCGAATAAA-TTGAGTCATGGTGG-------AAAAAAGA---------TCTATCGAGAAGACTGGAAGATGATTCAAATGGTCAGTAAGTAAACATaagaaaagtttcgaaagtgAACAAGCAATAATGACTAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   132775 370 +   386604 G-----------TCTTTGGccaagttttgaatttataaTTGCAACCGACTTGCGCCAGT---------ATTCC--GTGTGAAC---TAAAATGTTGGTTTTGGTTGCGACAAAAGCTTT----CCgaacaaaaattgacttGGAGCAAGCCAATTAGCACATagaga-atggaaga---------aa----aaa-ggaaaacatgTTTGTTATG--AGACAGAACA--------TCTAGAAATCATGGA-ATTTGTAT-GAATCTT-----CagtcaaaaaatgacaacaAATATATGTAGTGATGAGTGGGTGGATAAA-TTGAGTCATGgcca-------gaaaaagaatt------tttctcaagaat--tGTGAGATGATTCAATTGGTCAATAAGTAAACATAAGGAAAGTTTCGAAAGAGAACAAGCGGGCATGACTAACA
i caeSp111.Scaffold622  C 0 I 280
s caePb3.Scfld02_0      2666293 373 +  4147112 GT-------ACTTACTTGCCCAAGTTTTGAATATATAATTGCGACCAACTTTCACGCGT--------CATTCA--GTGTGAac---aaaaatgttggtttt------gaCAAAAGCTTT----CGGACAAAAAAGTGACTAGGAGCAAACCAATTAGTGcggagagagaatgaaaa---------aa----gga-agaaaacatgttt-tcatgATAGAAAGAACG--------TCTGGAAATCATGGATTTTTGTAGAGAATCtccag-acagacagaaaaaaacaacaaatataTGTAGTGATGAGTGGGCGGATAAA-TTGAGTCAtgtcca-------aaaagttttttttgtcctttcttgaggag--aaaatgatgattcaaATGGTCAATAGGTAAAT------AGTGTTTCGAAAGTGAACAA----GCATGACTAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  345168 1403 -   375229 I

a score=273.000000
s ce10.chrX             4435864 1 + 17718866 T
s caeRem4.Crem_Contig0  1378871 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2666666 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 515
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e cb4.chrX              9723264 0 + 21540570 C
e caeSp111.Scaffold622   133145 280 +   386604 I

a score=-424.000000
s ce10.chrX             4435865 7 + 17718866 GGATTGG
s cb4.chrX              9723264 4 + 21540570 GAGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1378872 7 -  4500979 GAACTAG
i caeRem4.Crem_Contig0  C 0 I 385
e caePb3.Scfld02_0      2666667 515 +  4147112 I
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e caeSp111.Scaffold622   133145 280 +   386604 I

a score=758.000000
s ce10.chrX             4435872 24 + 17718866 CACAAAACCGGAACGAGCACGAAA
s cb4.chrX              9723268 24 + 21540570 CACAGACTTAGAGAGGACAGGAAA
i cb4.chrX              C 0 I 390
e caePb3.Scfld02_0      2666667 515 +  4147112 I
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e caeSp111.Scaffold622   133145 280 +   386604 I
e caeRem4.Crem_Contig0  1378879 385 -  4500979 I

a score=0.000000
s ce10.chrX             4435896 1148 + 17718866  
e caePb3.Scfld02_0      2666667  515 +  4147112 I
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e cb4.chrX              9723292  390 + 21540570 I
e caeSp111.Scaffold622   133145  280 +   386604 I
e caeRem4.Crem_Contig0  1378879  385 -  4500979 I

a score=531.000000
s ce10.chrX             4437044 24 + 17718866 TCAAAGTAAAATAT----AAAGCAGGTG
s caeRem4.Crem_Contig0  1379264 28 -  4500979 TTGaagtaaaaaatttcgaaaacgatTA
i caeRem4.Crem_Contig0  I 385 C 0
e caePb3.Scfld02_0      2666667 515 +  4147112 I
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e cb4.chrX              9723292 390 + 21540570 I
e caeSp111.Scaffold622   133145 280 +   386604 I

a score=638.000000
s ce10.chrX             4437068 5 + 17718866 -AAAAC
s caeRem4.Crem_Contig0  1379292 6 -  4500979 AAGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2667182 5 +  4147112 -AAAAG
i caePb3.Scfld02_0      I 515 C 0
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e cb4.chrX              9723292 390 + 21540570 I
e caeSp111.Scaffold622   133145 280 +   386604 I

a score=8109.000000
s ce10.chrX             4437073 80 + 17718866 TACTCATTCTTTGAGATAC------TTGAAAACTTTGG-CTTTCTTTTCCATTTTAC-----AAAAGCTTGGCAGCAATTGGAAAAA------AAAGG------
s caeRem4.Crem_Contig0  1379298 90 -  4500979 TACTTATTTCTTGAAAAGCCCTCGGCTGCCAATTGTTT-CCTCcaattccgttttttctttaaatggCTT--TCGcaactcagagaa------aaagtg-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   133425 95 +   386604 tacttattttttgaaaaag-ctaTTCTGCCAATTGTTT-CCctcaattttgtttttc-----aatggcTT--TAGCGACACAAGAAACTAACTAGAgaaatgta
i caeSp111.Scaffold622  I 280 C 0
s caePb3.Scfld02_0      2667187 81 +  4147112 TActtatttcttgaaaaag------ctGCCAATTGTTTCCCCTcaattccgtttttc----aaatGGCTT--TAG-------AAGAAccaaccaaaaaa----g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  345168 1403 -   375229 I
e cb4.chrX              9723292 390 + 21540570 I

a score=31483.000000
s ce10.chrX             4437153 147 + 17718866 TTTTCCAACCAATTATTTG-CAGTGCAACAC-----A-AAAAATTGTCGAGTCG----ACACAAAACAA-----------------CGTGGTTTTGAATTGAACTTTTTGC----------GAAT-G--AAAATC------TCT-CTTGTTTTAAA--GTTTGACAACAATTTTGTG----------GGGGGGGGGGGGGGGGGGTT
s cb4.chrX              9723682 164 + 21540570 ttttccaaccaaTTATTTGCCAGAGCGGAgt-----a---aaattgttgaaaaaaattgagcgaaACAACACAGA-----------GGCGGTTTtcaattgaacttttttttcgggcTGAAGAGC-GCCCAAATCT-----TCT-TTTATTTTAAC--CCccactgt---ttttttctatttttccc------------gaGGGGTT
i cb4.chrX              I 390 C 0
s caeRem4.Crem_Contig0  1379388 164 -  4500979 ttttccaACCAATTATTTG-CAGTGCAGCAT-----A--Gaaattgtcaactagaa--aaacgaaacaacAGAGGCCTtcaaattttgtggttttcatttgaacttttttt---ggttagAGAGC-G-CTAAATCTCTCCCTCT-CTTGTTTTACCCTCCTCCCCGt---ttttttt------------------------GGGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   133520 165 +   386604 ttttcaaaCCAATTATTTG-CAGTGCtacacagagaaaaaaaaattcacaacGGGA--AAACGAAACAAGAGAGGCACCCCAATT-TGTGGTTttcaattgaacttttttg---ttgtggAAAGC-G-TGAaatc------tct-tttgttttacC--ATTCGGAATACATCGTTTC------------------------GAGGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2667268 148 +  4147112 ttttcgaccCAATTATTTG-CAGTGCAACAC-----ACGAAAATTGTCAAAGGGGA--AAACGAAACAACAGAGG--CCCCAATT-TGTggttttcaattgaacttttttc---atgtggAGAGCGG-CGAAATC------Tctctttgttttatt--------------ttatgtC------------------------GGGGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  345168 1403 -   375229 I

a score=142656.000000
s ce10.chrX             4437300 688 + 17718866  
s cb4.chrX              9723846 705 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1379552 727 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   133685 697 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2667416 762 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  346571 601 -   375229  
i caeJap4.Scaffold17084 I 1403 I 1689

a score=12143.000000
s ce10.chrX             4437988 17 + 17718866 GCCGTAGGAATCTGGAT
s cb4.chrX              9724551 17 + 21540570 GCCGTGAAAACctggat
i cb4.chrX              C 0 I 1934
s caeRem4.Crem_Contig0  1380279 17 -  4500979 GCCGTCAAAATCTGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   134382 17 +   386604 GCCGTCGAAATCTGGAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2668178 17 +  4147112 GGCGTCAAAATCTGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I

a score=1471.000000
s ce10.chrX             4438005 6 + 17718866 GCGATA
s caeRem4.Crem_Contig0  1380296 6 -  4500979 AGAATA
i caeRem4.Crem_Contig0  C 0 I 109
s caeSp111.Scaffold622   134399 6 +   386604 GGAACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2668195 6 +  4147112 GGAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I

a score=-6047.000000
s ce10.chrX             4438011 135 + 17718866 GAATTTAACGTTTGCCAGTGAGAAGTGTGAAGATATCTGTGTTGAATTTCGTAGAATACTATTAAGAATA-CAGTTATAATAGCCTAACATGGCCGAATATTAAAATGAAACCACCATCAGAGAATATCATAAAAG------
s caeSp111.Scaffold622   134405 124 +   386604 TA--TCAAC---------TGTCAAGTGTGACAATTTTCAAGTAGTGACTT-TGAAATGCTTTTGTGAATAGAAATTAaggtttcagaaaattagagaacggtaaaagagaaagagaattagagaacg--gtaaaagag----
i caeSp111.Scaffold622  C 0 I 552
s caePb3.Scfld02_0      2668201  95 +  4147112 TA--TCAAC---------TAGGAAGAG-------------------------GAAACg--gtagaaaagagaaattaaaaaagtgaaaaagaagattttagT-------TATGATAATCCCGGAACA--GTTACGGTTGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1380302 109 -  4500979 I

a score=-1871.000000
s ce10.chrX             4438146 480 + 17718866 TTTATTGTAAATTGCCAAATTTTCTAAAAGAAGATTTTTTTGAAAATTGCTGCAGG----TTTGAACTCCTATAACATTCAAATGGAAATAAATAAAACATTTGAAACATAAATGTTAAAGAAAAACTAATTCTATAGTCAAAAGTTATGAAAACTAAGTTTTCACAACTTTTCGACTGTACAAA-AAAAAATGTTAAACAATTATTTTCCACAATAAAATTAGCTATAATATTTAGATTTTAAAAGTGATCACTAAATGTTGAGAGGTCAACAATTTTTGTTTCAAGATATCTCTAGCGCAAGATGTTGTAAAGTGATTTGTACGTCATGAAAAATATATCACGGCATTCATTTTTGTATTAAAAGCGAAATAGCGTAAATTAACAGCGTAAGTTTACAGAACTGCACAAATGATAGTCAAATATGACCAAATAAGTCACTGAGAATATTTTGAGatttttaaatactttgttttagttaaaat
s caePb3.Scfld02_0      2668296 360 +  4147112 TTTCCTACAAATAGGGAAACGTT----Aggaaagttttt------gttgttttaagACACCCTGTGCTTCT------------CGAAAATGAACGAGACATGTGAACAATCGG-----------AAGTGATGTCATATTCCAAA--TATG-----TTTGTCTCGAAAACATTCCTTTtgtaaaaataagaaactatATACATTCTTTATTTAct------tcatttgttgtttttagtTGGAAGAAAGACTCTCTAACTAT-----GATAAACA-------------GAAGTTACGAGCCAAACAAATTGATAAACGAGATTTA-------------GTAACCTAACACTaat--------------caaaattaattgaatt-----------ttcctaGAACtgagcacttga---------------gaaaaacttACAG--------CTGGAACTTTTTAATTCAACACTCccataaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   134529 552 +   386604 I
e caeRem4.Crem_Contig0  1380302 109 -  4500979 I

a score=9216.000000
s ce10.chrX             4438626 607 + 17718866  
s caeRem4.Crem_Contig0  1380411 615 -  4500979  
i caeRem4.Crem_Contig0  I 109 C 0
s caePb3.Scfld02_0      2668656 542 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   134529 552 +   386604 I

a score=17.000000
s ce10.chrX             4439233 42 + 17718866 TTGGTAATTCTAGTATTCGACTTCGCAAATTTTTGGGAATTT
s caePb3.Scfld02_0      2669198 23 +  4147112 -------------------ACTTTGGACACATTTGAGGTTTG
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   134529 552 +   386604 I
e caeRem4.Crem_Contig0  1381026  0 -  4500979 C

a score=0.000000
s ce10.chrX             4439275 53 + 17718866 CCAGATCTCAAAATGCTTGACAATTGCCGAATCAAAAAATTTCAGAAACTCCG
e caePb3.Scfld02_0      2669221 18 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   134529 552 +   386604 I
e caeRem4.Crem_Contig0  1381026  0 -  4500979 C

a score=2592.000000
s ce10.chrX             4439328 9 + 17718866 GAACAGGAG
s caeSp111.Scaffold622   135081 9 +   386604 GAACAGGAG
i caeSp111.Scaffold622  I 552 C 0
s caePb3.Scfld02_0      2669239 9 +  4147112 GAACAGGAG
i caePb3.Scfld02_0      I 18 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381026 0 -  4500979 C

a score=28068.000000
s ce10.chrX             4439337 170 + 17718866 GACAGA-GCAATGAACTCATCGAATAAC---------------------------------TTTTTTCTGTTTTCCTCGTTTTCTGTTTTCACGTGGTTCGGATCATTCTGTCTCAAT---CCAAGGTTCAGTTGGCGGGTCGAAAAAAAAGAGGTGATAAGAAAATAAATTATTATTGGAGGAGAAGAACAGCCGCCGGTTTCTGG
s caeRem4.Crem_Contig0  1381026 135 -  4500979 -------------------------gac---------------------cGAGACGtatcgttttctcttttctctt--cttcgacATTTCACGTGGTTC----------AGCTTGAT----AAAGGTTCAGT----GGGTCG-CGAGTGATTGGcgataagaaaatgaattattaT-----GTGAAGAACAGCCGCCAgctcacaa
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold622   135090 177 +   386604 GAAGAAGGCAGAGGGCTCATC-AACGACCAgctcaatatttttttgtgcTGAGACGtctcgttttctcatttctc----tttcaatttttcacgtGGTTC----------ATCACAAT----GAAGGTTCAGT----GGGTCG--GAGTGATAGgtgataagaaaatgaattattac-----GAGATGAACAGCCGCTGTCTGCTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2669248 175 +  4147112 GAAGAA-GCAACGGACTCATC-AAcgac--------tctttttttctgtcgagACGTATcggtttctc-tttctcttatttttgatttttcacgtGGTTc----------ctcaaaatgaaagaaggtTCAGT----GGGTCG--GAGTGATAggtgataagaaaatgaattattaG-----GTGAAGAACAGCCGCCGGCTCACGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I

a score=-1055.000000
s ce10.chrX             4439507 23 + 17718866 CTTTCTGGCTCATTC-------GATCTACC
s caeSp111.Scaffold622   135267 30 +   386604 ATCTTAGACccgttttcattgaattctaga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2669423 30 +  4147112 AAACTTGATCAAATCttgttggaatttgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381161 41 -  4500979 I

a score=27892.000000
s ce10.chrX             4439530 290 + 17718866 ACCAG-----AGCAAATAAAATTCCTCG----------------GTGTTGAACA------CAAGAAAACCTAG------GGCAAAAACT----------GTCGTATCAAAAAAAAAA---------------------------------------------GAATACAGCTCCATAC----------TAAAAAATGCGCCTTATAAGT-GTGAATGTGGACTGAGTC--ACAACGGAAACAGCTGCCCACAAGCAA----GCAGCGTATTTCCTATAT----------TTTATCAAACACAATTCCAACTCATTGTTAACAAAGG-------GAAAATGGGGAAAATTAAGTTTCAAACGGGAGACGACGAGCACGTCAGTGTCAACACAATTGTTGTCAACAT--TCCGT--AC
s caeRem4.Crem_Contig0  1381202 334 -  4500979 attga-----aaaaaataagacaattgggtgattcatttttaatggaatGGACTCGAATTTAAGGAAAATGGA------AGTAAAGAAA----TATGGTGAGGTGTCAACTGGTCAA------------------------TTCATCTTTTAGGCAA-----AAGAACGGATGCTTGGCGG-------AAAGAAA------ATGTGAGG-AGCAATGCGAGTTGAGTC--ACAACGGAAACAGCTG--CACAAAGCA---------CTCCTCACCACTACCacatattttttatcaaacaCAATTCCAACTCATTGTTATCAAATAAGACgccaaaaattgggaaaattgagtttagaA------ACGGGTGAGATGCCAATGTCAACA-ATATGTTGTCAACAC--GCAGTAC--
i caeRem4.Crem_Contig0  I 41 I 310
s caeSp111.Scaffold622   135297 325 +   386604 agaaaacaagaagaaataaataaacaag----------------aaaataaa-----------taaaattaga--ttttagaaaagaaagttttatTCTTGAGTAAT-AATAAGAAA--------AGGCGTGAACTAGTAAATTTTATATTAGAAAGTG---AAAAGCGGAAATGTGGaggatt----gaaaaaa------ttttcgactAGGAAC-TGAACTGAGTC--ACAACGGAAACAGCTG--CACAAGCGG---------CTCTTCGCCACAA----------TTTATCAAGCACAATTCCAACTCATTGTTATCAAATAAGACGCCAGAAATT-GGAgaatcaaatttaaaa------acga----CATGTCAATGTCaaca-aactgttttcaacATACTCTGT----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2669453 350 +  4147112 aaaca-----aagcaatatgaaaacagg----------------aaaaaagact--ACACCATTAAAACTGGCATCTTTCGCaaaaaaa----------TAAGTGGGAAATAAGGAAGCTTTTTGAGGTGTGAACTAGTCAGTTCTCTTTTAGGAAGGGAGAAGAAGCGGAAATGTGATGGATCGgcagaaaaaa------ttgtggaa-aggAAC-TGAATTGAGTCATACAACGGAAACAGCTG--CACAAGCGGGAGAGCCCCCTCTTCACCACAA----------TTTATCAAACACAATTCCAACTCATTGTTATCAAATAAGACgtcaaaaattgggaaaattgagtttcaaa------cCGAGCGGCATGTCAATGTCAACA-AATTGTTGTCAACAT--TCAGT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I

a score=-7498.000000
s ce10.chrX             4439820 245 + 17718866 ACTTGAG-----AGTTGAGAAAAGAAATGAG--AAACGTAACTGTTTGTGTAAACGGTTTTGTATTTATATAATAGGAAAAATGGCAA------ACAGCATCAATTACATTTAAA---------AATAAA---TCGAATATTTACTTTTCATGGTCTGATTAACCAGATTGAAATTTTTTTAAAGCCAAAAAAGGCCGGATCCGACAAAAGA----TTGCTCAACAACTGATCTTCAATAAGCATACATCAATTAGCTGAATAAAAGTTTCGAA
s caeSp111.Scaffold622   135622 166 +   386604 ACTCGAG-----TGTTCTAGTTGGGAAGGAA-AAAGTgtaaatatcaga--aaaaag------------attctaTGGGCACTCTTAA------------TTGATTTTATCCCTG------------------TTATATAGCGAC--------Ctagaatt-------------tcttttcaaaacttatAAA------ACACGAGACTCGTAATGTTGGTCA-------------------------------AAACAGAATGAAGctacaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2669803 203 +  4147112 ACTTAAGACGGTCGTTCAATGTGGAGAGGCATCATGTGTACAtattggaagaaaagg------------agTGTAGGAGTTATGTCGAAGGATAACGGATTCAATTTTAATCGTGGAAGCGTTAAATAGAGGATGATATGTTGACTTTTCTCGCTCTGATT-------------CGTTTT-----GTTATTGA------ATTCAACAAACGT----TTGTTTC-------------------------------AACTAAGAAATAGCTTTGAA
i caePb3.Scfld02_0      C 0 I 105
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=332.000000
s ce10.chrX             4440065 17 + 17718866 GAATTCAAAGATTTTCA
s caeSp111.Scaffold622   135788 17 +   386604 aataagaagaattTTCA
i caeSp111.Scaffold622  C 0 I 32
e caePb3.Scfld02_0      2670006 105 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=0.000000
s ce10.chrX             4440082 70 + 17718866 ATCGTCTTGTATCATGATTGTTCTATTTCGCGAGTTTAGATGTCAGCTGTTTTCGAATTTAATGTAACCC
e caePb3.Scfld02_0      2670006 105 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   135805 32 +   386604 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=783.000000
s ce10.chrX             4440152 31 + 17718866 GCCAGTTTGAAAATTA---ATCAAATTTCAATTA
s caeSp111.Scaffold622   135837 34 +   386604 GCCATGATGAAAATAACGGATTCAATTTATATTA
i caeSp111.Scaffold622  I 32 I 20
e caePb3.Scfld02_0      2670006 105 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=0.000000
s ce10.chrX             4440183 24 + 17718866 ATTTATCGCCCTTGTGGAAGGCCT
e caePb3.Scfld02_0      2670006 105 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   135871 20 +   386604 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=-498.000000
s ce10.chrX             4440207 52 + 17718866 AATTCCGACATTT-----TTTCGCTTTGAAAAATGAAGCGTTGGCATACAATTCTTC
s caeSp111.Scaffold622   135891 34 +   386604 ATCTGCGATGTTTACACTTTACGCTCTGATTAA-----------------------C
i caeSp111.Scaffold622  I 20 C 0
e caePb3.Scfld02_0      2670006 105 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=-1559.000000
s ce10.chrX             4440259 68 + 17718866 AAAATGTGACATTTCTTTGAAAAACTTTGATTGGCTTGTAAGGATTCAAGCCTAATAGGGTGT------ATACT
s caeSp111.Scaffold622   135925 41 +   386604 --------ACG-----ATAATATATTCCGttagaaataagaaaa--------------aatgc------atATT
i caeSp111.Scaffold622  C 0 I 72
s caePb3.Scfld02_0      2670111 56 +  4147112 AAAGTGTGACA----TAAAATATACTTCAATAGTATTCTGAAGA--------------AGCGTGGGAGAACGTT
i caePb3.Scfld02_0      I 105 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=52.000000
s ce10.chrX             4440327 53 + 17718866 GGGATCTATGCTTGTAGATCAGTAGGATGCGAGACTTTTATCTACAACTCGGT
s caePb3.Scfld02_0      2670167 44 +  4147112 TGGAGAAATGC---------AGCCCCAAATGATATTTTTACAAATTGCTCGGT
i caePb3.Scfld02_0      C 0 I 194
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   135966 72 +   386604 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=0.000000
s ce10.chrX             4440380 51 + 17718866 ATAACTCGGCACTTGTAGGCAACATTCTGGCACTTGTAGGCAACACTTCGG
e caePb3.Scfld02_0      2670211 194 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeSp111.Scaffold622   135966 72 +   386604 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=-136.000000
s ce10.chrX             4440431 157 + 17718866 AAGCTATATGTA---TGTGGTTTTACAAAGTTTGTCAACTTCTTGTCGACTTTTTTTATCCAATTCACAAAAATTTGTCAAATTATTATTAGAGCAGTTTAAAAAAAATTGCT--CCCAAATTTCAAAAAGAAAATTAATTATAATTTTGTACCAAATATGC
s caeSp111.Scaffold622   136038 141 +   386604 AAGTCATATAAAATTTGTGAATAAACAGATTTTA------------CGATACTTCAGATGAGCTTAAGGAAAGTCGATTACAgtaatgtt--------ttgaaaaacacatctaatccaaatttttgttacataataaaata-aagtgagaaaaaagtttgc
i caeSp111.Scaffold622  I 72 C 0
e caePb3.Scfld02_0      2670211 194 +  4147112 I
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=-2288.000000
s ce10.chrX             4440588 78 + 17718866 --------GAAT-TTTAAACATTACGACAATTATTGCAATAACATTGTAAAGATAAATGTAAAGTTGTACAACAGAAGGAAACTTCA
s caeSp111.Scaffold622   136179 50 +   386604 gGAATTATAAACACTTAGATTTTACGAC----------------------------ATGTTCGACTAGCCA---------TACTTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670405 34 +  4147112 --------aaac-ttcaaattttacaaC----------------------------ATGCTTGCTTACACG----------------
i caePb3.Scfld02_0      I 194 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I
e caeRem4.Crem_Contig0  1381536 310 -  4500979 I

a score=-2836.000000
s ce10.chrX             4440666 28 + 17718866 ATAATGACTCAGAATAA-----AATCTGCCGAA-------
s caeRem4.Crem_Contig0  1381846 34 -  4500979 ACAATGACTCAGATAGCTTCCGATTCCTTCAGAT------
i caeRem4.Crem_Contig0  I 310 C 0
s caeSp111.Scaffold622   136229 29 +   386604 CGAATGACTCAGCTA-----------CTTCGCACAATATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670439 26 +  4147112 -GAATGACTCAACTAAA--------CTCTCCCAC-----T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I
e cb4.chrX              9724568 1934 + 21540570 I

a score=1753.000000
s ce10.chrX             4440694 5 + 17718866 TTACA
s cb4.chrX              9726502 5 + 21540570 ttaca
i cb4.chrX              I 1934 C 0
s caeRem4.Crem_Contig0  1381880 5 -  4500979 TTACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136258 5 +   386604 CCAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670465 5 +  4147112 CTACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  347172 1689 -   375229 I

a score=71890.000000
s ce10.chrX             4440699 257 + 17718866 AAAAT----AT---TCCCGTT--TTCACAGTCGACTTATCCCCCAAAATTACTGCAACGATTCCCGTCTAAGCTTGCGAGT---TCAGCGATG---CCGTCCCGTTTCGAAAGACGCCA---------ACAGCATCCCGTCAC--CTCCTCCACTTCGC---AACGACTTTG-TTTTTCCAACTGTTCAGTCA-------------TCACTGGTTTTCTTCC-CTTTTTTTCCAT--------------TTTTTCCACCATTTTGTGTGTCTGAATGCCTACTAAACTACCTCAGTCGTTTTCCTGCATACAGGT
s cb4.chrX              9726507 256 + 21540570 aaaat----gtttatcccGTTTATTCCCCGTTGA--TCCTCTC--TAATGACTCCAGCGATTCCCGTCTAATCTCACGAGT-AGCCAGATATGCCACCGTCCCGTTTT---CGTCGTCATTCGTTTCCAAC-------ACTACACCTTCTTAACCACCCTCAAACTACTTTGTTTTTTC------CTCGGAAGAAAAATAAGCgactca---------ttct-tttttttgccgg----------------ATTCCGCTGTTT--------GAAATGCCGTCCAAACTACCGTCTACTTTTTCGTGTATACAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1381885 222 -  4500979 AAAAC----TT---TCCCGTTT-TTCTTCATCGACTTATCCCC--AAATGACTGCAACAATTCCCGTCTAATCTCGCGAGT---TCAGCTATG---CCGTCCCGTTT-----GCCGTCACTTCTTCTCACCGCTTCTTACCACCTCGTCTTAACCACCC---AActactttg-tttttc------ttcaaaaa-------------cta---------ttca-GTTTGTTGCCGG---------------------------------------ATGCCGTCTAAACTGCCTTCCACTTTTTCGTGTATACAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136263 224 +   386604 TGAGTAGCGAT---TCCCGT---TTTCTTTGCGACTTATCCCA--AAATGACTTCTAGTATTCCCGTCTAATCTTGCGAAT---TCAGCTATG---CCGTCCCATTT-----GCCGTCATTTAGTCGCACCGCTTCTCAccacccttttttctcaatac---aACTAccttg-tttttc------aacaaaaa-------------cta---------tTCA-CTTTTCCGTCAA---------------------------------------ATGCCGTCTAAACTACCGTCTACTTTTTCTTGTATACAGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670470 203 +  4147112 TGAGAA---AT---TCCCGT---TTCGCTTTCGACTTATCCCT--AAATGACTGCAACAATTCCCGTCTAATCTTGCGAGT---TCAGCTATG---CCGTCCCGTTT-----GCCGTCATTTTGTCGCACCGCTTCTTGCCTC---------------------CTCCCTtg-ttttcc------tccaaaaa-------------cta---------ttca-ttttccTGTCGG---------------------------------------ATGCCGACTAAACTACCGTCGTCTTTTTCGTGTATACAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  348861 233 -   375229 aaaaa----at---tccCGTT--TTCCACCACACACAATCCCC--AAATGACTGCAACAATTCCCGGCTAATCTTGCGAGTTCGTCGACAATG---CCGTTGCCTTC-------CGTCACT-----------CACCTTGCC---------------------GGTTGTTTCG-CTTCTT------CGCAGATT-------------CTC---------TCCTGCCTTGTTGTCGAAGCGAAACGCACGCCAATTCATTCATTCCTACTGCCCACATGCCCACTAAGCTGTCGTCGACTTTCAATTGCATACAAGT
i caeJap4.Scaffold17084 I 1689 I 37

a score=-9305.000000
s ce10.chrX             4440956 39 + 17718866 GATGTTCTGA-------AGTT--TAACTCTGAAATATTGGTGTTTTG---------A
s cb4.chrX              9726763 33 + 21540570 --TAGTCAAT-------ATTT--T----------ACTTGAAGCCTTC---TGAATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1382107 37 -  4500979 --TGGTCAGT-----AAATTTAGT----------ATTCAGTGGTTTA---TATGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136487 39 +   386604 --TGgtcgaa----aatattt--t----------tttgaatgcgttcaaataaaaag
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670673 38 +  4147112 --TGGtcgaattttcatattt--t----------tcattttacattC-----ATGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349094 37 -   375229 I

a score=101699.000000
s ce10.chrX             4440995 164 + 17718866 TTTCAGATAATAACACCCAGATCTTCACCAATTCCATCTGATGGGCCCTATCCTGCATTTATTTCCACTTCCGAATTTGATCCTGTTCTATATAGGGAAGAATTGATACGAAAGGCTTATTTAACAAAGTTTCCGTTATACACGTAAGGA------AAAAGTAATACTGT----------
s cb4.chrX              9726796 157 + 21540570 ATATAGATCATCACCCCAAGATCATCAACTATACTGTCTGATGGCCCTTATCCTGCTTACATCTCTACCTCAGAATTCGATCCGGTTCTTTATCGAGAAGAACTGATACGCAAAGCTTATCTATCAAAGTTCCCGCTGT---AGTAAGTT----------GTAATCTTGT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1382144 157 -  4500979 TTGTAGATTATCACACCGAGGTCATCACCCGTACCAACAGATGGTCCCTACCCTGCATATATATCTACATCAGAATTCGATCCAGTGGTTTACCGTGAAGAACTCATACGAAAAGCTTACCTATCGAAGTTCCCATTGT---AGTAAGCA----------AAAATATTGT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136526 160 +   386604 ttaCAGATTATAACACCTAGATCATCACCTATTCCTTCTGATGGACCTTATCCCGCGTATATCTCAACATCAGAATTTGATCCGGTTGTTTATAGAGAAGAATTGATACGGAAAGCTTACCTTGAGAAGTTTCCACTGTACAAGTAAGTA----------GAAATAACTG----------
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2670711 170 +  4147112 TTTCAGATTATAACTCCTAGATCTTCACCAATACCAACCGATGGGCCGTATCTCTCTTACATATCAACGTCAGAGTTTGATCCCGTTTTGTACAGAGAAGAACTAATACGGAAAGCTTACCTTGCGAAATTTCCGCTGTACAAGTAAGAATTCCTTGACTGTAAAAAGTT----------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17084  349131 169 -   375229 TTTGAGATCATAACCCCGAGATCGTCGCCAACACCGTCCAGTGGACCGTTTCCCGCCTATATATCAACTTCTGAATTCGATCCGGTTGTGTATAGAGAGGAGTTGATACGCAAGGCATACCTTTCGAAATTTCCAATTTACAGGTAATTT-----------TAGAATCGCACGCGGGTTT
i caeJap4.Scaffold17084 I 37 C 0

a score=-468.000000
s ce10.chrX             4441159 16 + 17718866 AATTACTGtagggctt
s caeRem4.Crem_Contig0  1382301 11 -  4500979 TATAAC-----GATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  349300 16 -   375229 TATTAGTGTAGCGCAC
i caeJap4.Scaffold17084 C 0 I 94
e caePb3.Scfld02_0      2670881  4 +  4147112 I
e cb4.chrX              9726953  0 + 21540570 C
e caeSp111.Scaffold622   136686  4 +   386604 I

a score=-7981.000000
s ce10.chrX             4441175 59 + 17718866 ccatgcaatgcagacgtggtttcagggcctgacgtcttcctcaaacctgcATATTTTTT--
s caeRem4.Crem_Contig0  1382312 38 -  4500979 TTGTTTAGTTGAAACATAG---CAAAACTTGA--------------------ATTTATtgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136690  8 +   386604 ----------------------------------------------------GTTAATCA-
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2670885  7 +  4147112 ----------------------------------------------------GATCATT--
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17084  349316 94 -   375229 I
e cb4.chrX              9726953  0 + 21540570 C

a score=0.000000
s ce10.chrX             4441234 26 + 17718866 TCACATACtttgggctccgcgccgca
e caePb3.Scfld02_0      2670892  0 +  4147112 C
e caeJap4.Scaffold17084  349316 94 -   375229 I
e cb4.chrX              9726953  0 + 21540570 C
e caeSp111.Scaffold622   136698  0 +   386604 C
e caeRem4.Crem_Contig0  1382350  0 -  4500979 C

a score=2047.000000
s ce10.chrX             4441260 12 + 17718866 ttattcagaagg
s cb4.chrX              9726953 12 + 21540570 TCATTCGGTAGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   136698 10 +   386604 --ATTCACAAGT
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2670892 10 +  4147112 --ATTCACGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  349316 94 -   375229 I
e caeRem4.Crem_Contig0  1382350  0 -  4500979 C

a score=-4259.000000
s ce10.chrX             4441272 57 + 17718866 cgcggctcccggcgggacaggcgttttagcgcttgcatggaagccataCCGTACTGT
s cb4.chrX              9726965  9 + 21540570 ---------------------------------------TAAGCCATG---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   136716  1 +   386604 ---------------------------------------------A-----------
i caeSp111.Scaffold622  I 8 C 0
e caePb3.Scfld02_0      2670902  0 +  4147112 C
e caeJap4.Scaffold17084  349316 94 -   375229 I
e caeRem4.Crem_Contig0  1382350  0 -  4500979 C

a score=218.000000
s ce10.chrX             4441329 7 + 17718866 ACATATA
s caeJap4.Scaffold17084  349410 7 -   375229 acaaaaa
i caeJap4.Scaffold17084 I 94 C 0
e caePb3.Scfld02_0      2670902 0 +  4147112 C
e cb4.chrX              9726974 0 + 21540570 C
e caeSp111.Scaffold622   136717 0 +   386604 C
e caeRem4.Crem_Contig0  1382350 0 -  4500979 C

a score=-23463.000000
s ce10.chrX             4441336 114 + 17718866 AAACTTTCAAG------AGAAATTTTCATTATGGTGTTAGGTTTCA-AAATAGTTATAATCAAAATCTCCAGTATTAAATTATCCTAAACATGCTTACACAGCGATCTAATAATCTTCATT
s cb4.chrX              9726974  18 + 21540570 --------------------------------------------------------------------------------TTCTCTGATCA---------------CTA-------CCTG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1382350  49 -  4500979 aaacttgaaaa------aag----------------------tgta-aattAG---------------------------TTCTTTGAACA---------------CTATacactttcat-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136717  37 +   386604 AAAACTGCAAG------AAG------------------------------------------------------------TTCTTTGATCA---------------TTATTTACTACA---
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  349417  68 -   375229 aaaattacaaactgTTCAAAAATCAGTGTATTCGCGCGAggttaaataaataataaaaa---------------------tatctTCAG--------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2670902   0 +  4147112 C

a score=519267.000000
s ce10.chrX             4441450 1150 + 17718866  
s cb4.chrX              9726992 1167 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1382399 1181 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   136754 1121 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2670902 1163 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  349485 1274 -   375229  
i caeJap4.Scaffold17084 C 0 I 273

a score=212100.000000
s ce10.chrX             4442600 303 + 17718866 AAAGCTTCTGGCGAGAGAACCCATGCTGTCAATGCTCTTGGAGAGAGAACTTCCGCACGGAAAGCTGTCGGGGAAAGTATTCGTGCAATTAACGCAGATGGTGACAAAACTGTTGCAATAAATGCTCGAGGAGAGAGAACGTCAAGCTGTA-AAGATAAT-----GTTGGGAAGACTAGAAAAAGTCAAGAAAATAAAG---TACCTTCAAAGCTTCCGGGCGTAAAATCTCCGATACAAAGGCATGAGGTGACAGTACCATAGCTTCCATTGACACTCCGAAGTTGATGAGGTTGGCAAAGGCATGGGGCT
s cb4.chrX              9728159 299 + 21540570 AACGCTTCTGGAGAGAGAACCCATGCGGTTAAGGCTCTCGGAGAGAGGACTTCTGCACGGAATGCAGTTGGAGAGAGGATTCGGGCAATAAGCGCGGATGGAGAGAGTACTGTAGCGATGAAGGCACGAGGAGAGAGCACgtcaagctgaa-aaatca--------caaaatttgattgaaaa----atgattgtgGATTGATACCTTCAAAGCTTCAGGCCGCATGATTTCCGACACGAATGCATGGGGAGAGAGTACCATTGCTTCCATGGAGACACCAAAGTTTATGAGATTGGCAAACGCGTGAGGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1383580 297 -  4500979 AACGCTTCTGGAGATAACACCCATGCAGTCAATGCTCTTGGGGAGAGTACTTCTGCACGAAAAGCTGTTGGAGAGAGGATTCTTGCAATTAGTGCAGATGGGGACAGTACAGTAGCAATGAATGCACGAGGAGACAGAACatcaagctgaa-aaattgtt-----ttgggGGCtgttagaaaa----aaga----ggagct-CACTTTTAGAGCTTCGGGCCTCATGATTTCCGAAACAAATGCATGTGGAGAAAGTACCATTGCTTCCATCGATACACCAAAATTGATCAGATTGGCAAACGCATGTGGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   137875 298 +   386604 AGAGCTTCTGGGGAGAGAACCCATGCAGTTAAGGCTCTTGGAGAGAGAACTTCTGCACGAAACGCTGTTGGAGAGAGAATTCTAGCAATCAGTGCAGAAGGTGAGAGGACTGTTGCAATAAATGCTCGAGGAGAAAGTAAATCGAGctgga-ataaaa--------ttgaacCTATCAAGTAA----TAGCGAATGGAACG-TACTTTCAAAGCCTCTGGACGTATAATCTCTGACACGAAAGCATGAGGAGACAGAACCATTGCTTCCATCGAAACGCCGAAGTTTATAAGGTTTGCAAAAGCGTGTGGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2672065 298 +  4147112 AGCGCTTCTGGAGAGAGAACCCATGCTGTCAATGCTCTTGGTGACAGCACTTCCGCACGGAATGCTGTTGGAGAGAGAATTCTAGCAATCAAGGCTGACGGTGACAGAACGGTTGCAATGAAAGCACGGGGAGATAACAGGTCAAGCTGAATATAAGT--------TTAAGTCTGAGCAG-AG----GAACATCTTGAACC-TACTTTCAGTGCTTCTGGTCGTATAATTTCTGATACGAAAGCATGTGGAGACAGCACCATTGCTTCCATCGAAACACCAAAATTGATCAAGTTTGCAAAGGCGTGTGGCT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  351032 305 -   375229 AGTGCTTCCGGAGAAAGAACCCAAGCTGTTAAGGCTCTTGGTGAGAGAACCTCAGCTCGAAAAGCAGTTGGAGAAAGAATCCTAGCAACCAATGCAGAAGGAGACAAAATTGTTGCGATGAAAGCGCGAGGGGATAGTACATCGAGCTGAA-ATAATTACTTTTAGCTGAATTATTCCAAATC----CAAATTACAAAAT--TACCTTCAATGCTTCAGGCCGCAAGATTTCAGAAACAAATGCGTGTGGTGATAGAATCATGGCTTCCATACTGACACCGAAGTTGATGAGATTTGCAAAGGCGTgaggct
i caeJap4.Scaffold17084 I 273 C 0

a score=-6530.000000
s ce10.chrX             4442903 42 + 17718866 GAAAATAAGTACATACCTGTGTTTTACAATTCATACTTAATT
s cb4.chrX              9728458  1 + 21540570 ---------------------------------------A--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   138173 14 +   386604 --AAACAACTA--------------------------TAATT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17084  351337 25 -   375229 -----------------gaaattttggagttTCGTCGCAATT
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2672363  5 +  4147112 I
e caeRem4.Crem_Contig0  1383877  0 -  4500979 C

a score=-7454.000000
s ce10.chrX             4442945 74 + 17718866 TAATACATTCGTGAATTTGTATATGGAATTCCATGGAATTTCATAAACTTGTTCCTGATATTAAATTCAAAAAA
s cb4.chrX              9728459 41 + 21540570 ------------AAACTTGTGT-----------TGAAATTATATAAAATCG----------TGGATTCGAAACA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1383877 27 -  4500979 ------------AAATTGACGC-----------AGATGTTTTATATTCTT------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17084  351362 19 -   375229 ------------TAATCAATTA-----------TGCTTTTTC--------------------------------
i caeJap4.Scaffold17084 C 0 C 0
e caePb3.Scfld02_0      2672363  5 +  4147112 I
e caeSp111.Scaffold622   138187  0 +   386604 C

a score=0.000000
s ce10.chrX             4443019 5 + 17718866 AAAGT
e caePb3.Scfld02_0      2672363 5 +  4147112 I
e caeJap4.Scaffold17084  351381 0 -   375229 C
e cb4.chrX              9728500 5 + 21540570 I
e caeSp111.Scaffold622   138187 0 +   386604 C
e caeRem4.Crem_Contig0  1383904 0 -  4500979 C

a score=-5048.000000
s ce10.chrX             4443024 29 + 17718866 GGAATTTAAAAGTTGTAGCGGCTAAATTC
s caeRem4.Crem_Contig0  1383904  8 -  4500979 ---------------------CTAATTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2672368  3 +  4147112 -----------------------AGA---
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  351381 12 -   375229 --ACCTTAAGAGTT---------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9728500  5 + 21540570 I
e caeSp111.Scaffold622   138187  0 +   386604 C

a score=0.000000
s ce10.chrX             4443053 2 + 17718866 GC
e caePb3.Scfld02_0      2672371 0 +  4147112 C
e caeJap4.Scaffold17084  351393 0 -   375229 C
e cb4.chrX              9728500 5 + 21540570 I
e caeSp111.Scaffold622   138187 0 +   386604 C
e caeRem4.Crem_Contig0  1383912 0 -  4500979 C

a score=-15887.000000
s ce10.chrX             4443055 111 + 17718866 AGTGAGACCCTTGCCGGAAACTAGCGTGTGCCTTAAAAAACAATCAATTTTTACGAAGCCATGATACCAACACTAAGCGTATTTGCACAAAAAATATTCCATTCGAAAGTA
s caeSp111.Scaffold622   138187  21 +   386604 -------------------------------------------------------------------------------AGTGAGGATGA------CTTAATTTG-----A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2672371  29 +  4147112 -----------------------------------------------------------CAAGA---------------TGTTTGGTTAAAA---CTTTTACTCG-----T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  351393   9 -   375229 --------------------------------------------------------------------------AAAAACGTA----------------------------
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9728500   5 + 21540570 I
e caeRem4.Crem_Contig0  1383912   0 -  4500979 C

a score=-3226.000000
s ce10.chrX             4443166 5 + 17718866 ATTC-G
s caeRem4.Crem_Contig0  1383912 5 -  4500979 CTTCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   138208 3 +   386604 ATT---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2672400 4 +  4147112 ATTC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17084  351402 4 -   375229 ACCC--
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9728500 5 + 21540570 I

a score=139869.000000
s ce10.chrX             4443171 241 + 17718866 TACCTTTAATACTAAATATTCCACATCACCAATGTGTTCTCCCTCTGGATAATTTGGAATGACTGGATGTGCATCACCATCACCACCACCGCCTG---CTCGTTTGACACGTTTCTGAGGTT---TGTTCCAGAACGGCCACTGCGGCCGTCCTTCCGTTGCCAGTTTTCGAATTGCATCTTCTATCCTAGTATCTCTTTCTTCTCTGGTCATATTGGCGATGGGCAAGTAGCTTGTTGGGTTATCT
s cb4.chrX              9728505 238 + 21540570 TACCTTGAGAACTAAATATTCCACATCACCAATATGTTCTCCTTCCGGATAATTTGGAATC---GAAGGGTGTCCATCATGGCCACCTCCCCCATCTGCTCTTTTCACTCGTTT---AGGAC---TATTCCAAAACGGCCATTGTGGTCTTCCTTCAGCAGCTAGTTTTCGGATAGCAGTTTCTATTCGAGCATCTCTATCAGCTCGGGTCATATTGGTAATTGGGATGTAGCTGGATGGATCGTCT
i cb4.chrX              I 5 I 522
s caeRem4.Crem_Contig0  1383917 238 -  4500979 TACCTTCAACACCATAAACTCAACATCACCAATATGCTCTCCTTCCGGATAATTTGGTATA---TTATCTCCTCCATCTGTGTCCCCACCTCCAT---CTCTTTTCATGCGCTTACCAGAAC---CATTCCAGTATGGCCATTGAGGCCTCCCTTCAGCTGCTAGTTTTCTTATTGCAGTTTCTATTCTAGCCTCTCTCTCCGGTCTAGTCATATTGGTTATTGGAATGTAGCTCGATGGATCAtct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   138211 231 +   386604 -ACCTTCAAGACCATATACTCGACATCACCAATATGTTCGCCCTCTGGATAATTTGGAATA---TGAT------CATCAGTTCCCTCGCCGGCCG---CTCTTTTCAATCGCTTCCCGGGTG---CATTCCAGTATGGCCATTGAGGTTTCCCTTCTGCTGCCAGTTTTCTGATCGCTTCTTCTATCCTATCGTCTCTTTGAGATCTTGTCATATTAGTGATGGGGAGGTAACTTGTCGGATCATCT
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2672404 231 +  4147112 -ACCTTCAAAACCATATATTCAACATCTCCAATATGTTCTCCTTCTGGATAATTTGGGATA---TGAT------GATCAGTTCCTTCGCCTGCAG---CTTTCTTCACACGTTTTCCAGAAC---CATTCCAATATGGCCACTGTGGTCTGCCTTCCGCTGCTAGCTTTCGAATAGCCTCTTCAATACGGTTTTCTCGTTCAGTTCTTGTCATGTTTGTTATAGGTAGATAGCTGGTTggatcatct
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17084  351406 218 -   375229 --------------------------CATTAATTTCTTCTTCCTCAGGATAATTTGGGATAGACGGGTGATCATCACCACCACTGCCATCCCCGG---CTCTCTTCACTCTTCTATTGTTCCTTGCATTCCAAAATGGCCATTGAGGTCTTCCCTCTATGGCCAGCTTCCGAATAGATTCTTCGACTCGAGCATCTCGTTCTAATCTGGTCATGTTAGCGATTGGAAGGTATCTTGATGGATCGTCT
i caeJap4.Scaffold17084 C 0 C 0

a score=-9779.000000
s ce10.chrX             4443412 50 + 17718866 TCAAGTTATAGT---------AGACTAGTTTAATAGACTTTGAGGGAAAAATGTGTATA
s caeRem4.Crem_Contig0  1384155 36 -  4500979 taaatttaaaaatt------aagacAAGTTT----------------GAAAACC-GATA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   138445 34 +   386604 TGATTATATAATCT------AAGCACAAT------------------GAAATTT-TATA
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2672640 44 +  4147112 tcaaaatgttattt------gggttttattt---------ttgtatagAAATTCATTTA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17084  351624 40 -   375229 GAAAATAATTATCTGTATCAGAAAACAGT------------------AAAAGCA-TGTA
i caeJap4.Scaffold17084 C 0 C 0
e cb4.chrX              9728743 522 + 21540570 I

a score=191351.000000
s ce10.chrX             4443462 325 + 17718866 ACTAACCAGCATAGACAAGCTTGACTTGCTCCTCATTCAAATGAGCGAATCCATATTTTTTATACTCAGAAGCTTGGTCGGAGGAAAATAGTTGCCTGGCTCTG----------AAGTACAAATAGTGAGCCAAACTAAA-AA--T-------------ATGAACTTACTTGAGCCAATTTATATCGTTTTTGCTCAATTGTTGAACCATGGGATATTGAACCTCTTCCATAAACTGCATTTCTGGTTCTATTCTGGCGATTAAATTGTCCATGGCAGTTCCAGCTCCGCTTAGATCAAGAATGGCGTCTAACATTAATTGTTGATATCGCTGATTGGATGAAACTATCTG-------------------------------------------------
s cb4.chrX              9729265 326 + 21540570 ACTCACCAGCATACACCATTTTCACTTGGTCCTCCGTCAGATGAGCAAAACCgtcttttttgtattcttctgATTGCTCTTGGGTGAATAATTGACGTGCCCTG----AAAACAAAAT---GCTT---TTCCTATTTTAATTG--C-------------ATTTTCTCACTTGAGCCATCTGATATCCTGTCTGCTCAATTGTTGAACCATTGGATACTGTACTTGCTCCATGAAATCCATTTCTGGTCCAATTTTTGCGATAAGCTCCTCCATAGCAGTTCCAGCACCGCTCAAGTCTAGAATTGCTTCGAGCATCAATTGCTGGTACCTTTGGTTTGAAGAAACAATCTG-------------------------------------------------
i cb4.chrX              I 522 C 0
s caeRem4.Crem_Contig0  1384195 327 -  4500979 --TTACCAGCATACACCAATCGGATTTGATCTTCTGTAAGATGTGCAAATCCATGTTTCTTATACTCAGCTGATTGACTTTCAGTGAACAGCTGTCGTGCTCTT------AACaaaat---agttttgtttttatttctattagtC-------------GGTCACTTACTTCAGCCAATTTATATCTTGTCGACTCATTTTCTGAACCATCGGGTACTGTACTTGTTCCATGAACTGCATTTCTGGTTCTATTTTTGCAAGAAGCTCTTCCATTGCCATACCAGCACCACTCAAGTCCAAAATAGCTTCTAACATTAATTGCTGGTATCTCTGATTAGAGGAAACAATCTG-------------------------------------------------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   138479 329 +   386604 -TGTACCAGCATAAACTAATTTCACttgttcttcattcaaatgaGCATATCCGTGTTTCTTATACTCAGAAGATTGTTCTTGAGTGAAAAGTTGCCTTGCtctg----------aaat---gtttctgaTTATGACTAGATTA--C------ACACAAAACTACCTTACCTCAACCAATTGATATCTTGTCTACTCAACTGCTGGACCATCGGATACTGAACTTCTTCCATAAATTGCATTTCTGGTTCTATCTTGGCCAATAACTGTTCCATGGCAGTTCCAGCTCCACTGAAATCCAATATCGCTTCTAACATCAGCTGTTGATAACGCTGGTTGGAAGAaacgatctg-------------------------------------------------
i caeSp111.Scaffold622  C 0 I 29
s caePb3.Scfld02_0      2672684 329 +  4147112 -CATACCAGCATAAACAAGTCGAACTTGTTCCTCAGTCAAGTGAGCAAAACCACTTCTCTTATATTCTGCTGACTGCTCTTCAGTGAACAGTTGTCGAgctcta----------aa------tttttgattgt---taaATAA--CTTTCGGATTCTGAATGCTGATACTTTAGCCAGTTGATATCCTGTCTGCTCAGCTGCTGAACCATTGGGTACTGTACTTGTTCCATGAACTGCATTTCTGGTCCAATTTTTGCTATCAATTCTTCCATAGCAGAACCAGCGCCACTTAAATCCAATATTGCTTCTAACATTAGTTGCTGGTATCTTTGATTTGAAGACACAATCTG-------------------------------------------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17084  351664 382 -   375229 AGTTACCTGCGTACACCAATTTTATTTGCTCCTCTGTCAGATGAACAAATCCATACTTTTTGAATTCTGCTGTTTGCTCCAACGAAAACATTTGTCTAGCTCTGTATAACAAGAAAAT---GAATTGGGTTTTTACTGTTTGT--A-------------GCTAACTCACTTAAGCCAATTAATATCTTGTCTACTGAGCTTTTGAACCAGAGGATATTGAATGTTTTCCATAAACTCCATCTCCGGCTCAATTTTAGTTAACAACTCATCCATTGCAGCTCCAGCTCCACTCAAATCCAGAATTGCTTCTAGCATCAATTGTTGATAACTTTGATTTGAAGAGACAATCTGAAACATGCAAGGTACCAAAAGTAAGTTACGACGCTCGGATGTTCCGCAG
i caeJap4.Scaffold17084 C 0 C 0

a score=-24772.000000
s ce10.chrX             4443787  32 + 17718866 AATTGTT-----------AAAGTTTGAATGTAACTG--------------------------------------------------------------------GTTTAAT------------------------------------------------------------
s cb4.chrX              9729591  37 + 21540570 ATTTGTTt----------taattatagaaaaaaacc---------------------------------------aCAA-------------------------GCTTATT------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1384522  33 -  4500979 AATAGTCG----------GATGTACTCATAAGATTC--------------------------------------------------------------------GATTCAT------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2673014  30 +  4147112 AATAATT-------------CATAggtgaaaaaata--------------------------------------------------------------------cattttt------------------------------------------------------------
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold17084  352046 171 -   375229 AATTGTCTCGCAGATACCTTCGCTCGTGAACAAATTTACTTGGTATAAAGCAAgcactgcaaattcgctccaatcgcaaaaAGCGctgtctctcaattttctgcgctctatatcgtcgccaacgtggccgtcaCGCCCACTGCGAatagagcgaatttacagcgctccaaT
i caeJap4.Scaffold17084 C 0 C 0
e caeSp111.Scaffold622   138808  29 +   386604 I

a score=111987.000000
s ce10.chrX             4443819 170 + 17718866 TTAAAAAAA------------------------------GCTAACCTCGAATAAATCTGGCAATGAAAAGAATCCATCCTTCTGGAATGACAACAGTGTCGGAGAGAGGAAACGATTTTTTGGTTTTCCTTCAGGCATAATTGATAATATTCTAGGCGATAGAAAGGAGAACTTCTTTTGAGCTATTTCAGATGCCTGAA
s cb4.chrX              9729628 162 + 21540570 -TGTA-------------------------------------TACCTCAAAAATATCTGGCAGGGAAAAGAATCCGTCTTTTTGGAAAGACAACAGTGTTGGAGAGAGAAaccgatttttgacttttcccTCTGGCATGATAGACAAAATTCTGggtgataaaaatgaaaacttctTTTGGGCAACTTCGGAAGCCTGTA
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0  1384555 162 -  4500979 -TACT-------------------------------------CACATCAAAAATGTCTGGTAACGAGAAGAATCCATCTTTTTGAAACGAGAGAAGGGTTGGAGATAGAAACCGGTTCTTTGGTTTTCCCTCTGGCATTATTGAAAATATGCGAGGAGATAAGaacgaaaactttttctgtCCAACTTCAGAAGCctgga
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold622   138837 170 +   386604 TTGAAATAC------------------------------CCTCACCTCGAATAAATCAGGTAACGAGAAAAAACCATCTTtttggaaagagaagataGTTGGAGAtagaaaacgatttttcccttttccttctGGCATTATGGACATTATTCTTGGAGATAAGAAggaaaacttctttttcgcCATTTCCGAAGtctaaa
i caeSp111.Scaffold622  I 29 I 7
s caePb3.Scfld02_0      2673047 167 +  4147112 TTACAAAAA---------------------------------TACCTCGAATAGATCTGGAAGTGAGAAGAATCCATCTTTTTGGAATGATAACAGAGTTGGTGAcaaaaacctgttttttccTTTGCCTTCCGGCATTATAGACATTATTCGAGgagatagaaatgaaaacttcttcttGCCAGTTTCTGATGCCTGAA
i caePb3.Scfld02_0      I 3 I 7
s caeJap4.Scaffold17084  352217 200 -   375229 TTGAGAAGAATAttggtaattttttattgatttttaaatacttACATCAAAAAGTTCTGGAAGGGAAAAGAAGCCATCACGTTGAAAAGAAAGAAGCGTCGGAGAAAGTAgtcgattttttggttttccttCAGGCATTATCGATAATATCCTTGGTGATAAAAAGGAAAACTTCTTATGGGCGATTTCAGAGGCcttaa
i caeJap4.Scaffold17084 C 0 C 0

a score=-13611.000000
s ce10.chrX             4443989 40 + 17718866 TTAAAATT-----TATTTTGAAGGAAA-ACACTCGATTTTTGGATT---------------
s cb4.chrX              9729801 25 + 21540570 CTCAACTA---AATATTGAATA------------------ATGCCT---------------
i cb4.chrX              I 11 I 1
s caeSp111.Scaffold622   139014 23 +   386604 ttcgactt-----tGTCTCATA------------------ACGATT---------------
i caeSp111.Scaffold622  I 7 I 3
s caePb3.Scfld02_0      2673221 32 +  4147112 CATAACTTGAGAAtctttcaca--------------ttttctgata---------------
i caePb3.Scfld02_0      I 7 I 3
s caeJap4.Scaffold17084  352417 47 -   375229 --------------attacaaaaaaaatgttattcaTGTCTAGATACGTCATTTCAAATAC
i caeJap4.Scaffold17084 C 0 C 0
e caeRem4.Crem_Contig0  1384717 41 -  4500979 I

a score=91454.000000
s ce10.chrX             4444029 122 + 17718866 TTACCGAAAATTGGTTTATGATATCCACTATTTTTTGGAACGCGTCGTTTTCGTTATCGATTTTTGGAGCCTCACTATTGATTTTCAGCTTCATTTGATCAAATACTCTGAAAA---AT-ACA--------TTT
s cb4.chrX              9729827 126 + 21540570 CTACCGAAAATTGATTTATAATGtccacaattttctgaaaagcaTCGTTCTCATTCTCTATCTTTGGCGCCCGGCTGTTGATGGGAAGCTTCAGCTGGTCGAACACTCTGAAAAAGCGtcact--------ctt
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1384758 123 -  4500979 TTACAGAGAATTGATTGACAATGtccacaattttttggaatgcatcattctcattttcaatttttggagcTTCACTATTGATAGGCAGTTTCAATTGGTCAAagactctgaaaa---ttcaga--------ctT
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold622   139040 119 +   386604 TTACTGAAAACTGGTTGATGATAtccactattttttgaaaagcatCGTTTTCATTGTCGATTTTTGGTGCTTCGCTGTTGATAGGTAGTTTCAGTTGGTTGAACACTCTGAAAA---GT------------CTA
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2673256 131 +  4147112 TTACAGAAAACTGATTAATAAtatccacaattttttgaaaagcatcgttttcattttcgatttttggtgcTTCACTTTTGATAGGCAGCTTGAGTTGGTCGAACACCCTGAAAA---CTTGCATCATGTTGTTC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17084  352464 122 -   375229 TCACCGAAAATTGATTAATGATATCAACGATTTTCTTCATTCCGTCATtatcattttgaatttttggcgctTCACTGTTGATTCCCAACTTTAATTGATCGAAaactctgcaaa---aa-aaa--------ttt
i caeJap4.Scaffold17084 C 0 I 1514

a score=-17729.000000
s ce10.chrX             4444151 52 + 17718866 ACTTAACATTCAGTTGGTCTCGCCACTTTAACTTTTT------------------------CGTATCCCCAGATTG---------------------
s cb4.chrX              9729953 80 + 21540570 tt-------tcttttcttttttctaactcccgttttttttGCTGACTCAGTTCACCACCTGTGTGTCTCATGTTGAAC----------ACGACACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1384881 88 -  4500979 AT-------TTTGTTGCGCCCTCTTTTCCCGGTCTGTGTGGTCGGGAGTCTTGAC--ATTGAGTCTCTCTTGTTCCACTCTCTCGCTTTCTATCGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   139159 57 +   386604 CC-------TctattcctcttttctctactCCTCTTTT---------------AC------TGCCTCCTCCGTGTGTC----------GAGACTC--
i caeSp111.Scaffold622  C 0 I 154
s caePb3.Scfld02_0      2673387 44 +  4147112 CC-------TctgttcttctctttcttgCTACTTTTT----------------------------------GTTGATC----------GAGACAC--
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17084  352586 1514 -   375229 I

a score=3698.000000
s ce10.chrX             4444203 31 + 17718866 TTGTCTACGCCCAAGAAAGTGGTGC-ACATGT
s cb4.chrX              9730033 31 + 21540570 GTGTCTACGTCTCACACAAAGACTC-ACTCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1384969 31 -  4500979 ATGTCTCTGTCTCACAGCGATGCAT-ACTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  6025197 32 - 33334924 TTGTGTACGCCCTGGGAATCGGGTCGACACGT
i caeSp111.Scaffold629  I 17522 n 154
s caePb3.Scfld02_0      2673461 32 +  4147112 CTGTCTATGTCTCACAACGGTGTATGCCCCGT
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17084  352586 1514 -   375229 I

a score=1146.000000
s ce10.chrX             4444234 2 + 17718866 AG
s cb4.chrX              9730064 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1385000 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2673493 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17084  352586 1514 -   375229 I
e caeSp111.Scaffold629  6025229 154 - 33334924 I

a score=76661.000000
s ce10.chrX             4444236 90 + 17718866 TCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTGTTTATTT
s cb4.chrX              9730066 90 + 21540570 TCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGcggcccgggttcgattcccggcATGGGAagttccttttttattttgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1385002 90 -  4500979 TCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCggcccgggttcgattcccggcATGggaagttcttttttttattttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629  6715576 89 - 33334924 TCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGttctttttgccttttt-
i caeSp111.Scaffold629  n 154 n 154
s caePb3.Scfld02_0      2673495 90 +  4147112 TCCcatgtggtctagtggttaggattCGTGGTTTTCACCCACgcggcccgggttcgattcccggcATGGGaagttcctttttcttttttt
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold17084  352586 1514 -   375229 I

a score=95816.000000
s ce10.chrX             4444326 330 + 17718866 --------------------TTGTTTCAATGTTTTTGATGT--TAATATTGCCATTAAA----------------------------G-ACAGTTAA-----ACAATTTTTTCTAGGATCCCTGTC-CGACAG----ATGCCAGAAAACTAGT-----TTAGCTGTGTGTGTGTGTCA----------------TTTTTTCTAAT-GGCTAC----TGCTCTA-TTTAAAAGTTCACGCCTGTCAATCTC------GATTTCACAA-CAATGACAACAATGATCGGT--TTCCAGTTAGCTCTAG---TTT----GTCCTC------AGACATTAATGACCGCTAATCCGAAATGACCACAGTTGAAATGTGGCAGGCCATGCAATTGACGCTTATGCTTGAGTTTGAGGG---GGGATATATTCAGAG----------AAACCGGTTGA---TGG
s cb4.chrX              9730156 374 + 21540570 atACTGCACACATTTGCC--------------AACTGCGATTGTATTGTCCGCATCAAACTACAGTCAAGTTATG-----TATTTCCG-CAGGCAAAA----ACTAGTGTCCATTCCATATCTATTACGGCCATTATACGGCAAAGAACTAGTTCCG-TTCCCATTGCCCACGTGTCA-------------------------GTTGAGCAT-AAGTGCTCCACTTTAAAAGTTCA--CCTGTCAATCTCGATTTGAATTTCACAACCACTGAC--CATCTATCGGT--TACTAGTTAGCTCGGG---TTTTGTCATCGTCACAGTGAGACGTTAATCATGGCTAATCCCAAATGACCA------AAGTGT-----GGCAAGCAATTGA------CGCTCggttttgagag-----aaaaaagtgaggagGTGGGGGGAGAACCGGTTCGGTATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1385092 398 -  4500979 tcgattttcatgtCTAACTATTTATT---TGTAATAACGAC--TACTACGGGCATCACACTACACTcgaactatacttttttcttccg-ttGGTCAAACTAGACAAATGTTCATTTCGTATCTATTACGGTAATTATATGCCAACAATCTGGT-----TTTTCA-TGTCCACGTGTCACTACTCCCCATCAAAC--TCATCTGATGAAGCAC--ATTGCTCTA-TTAAAAAGTTCACGCCTGTCAATCTT------AATTTCACAA-CACTGAC--CATCTATCGGTCATACTAGTTAGCTCTGG---TTT----GTCGTC------AGACGCTAATCACGGCTAATCCCAAATGACCATAGTTGAAATGTGGCAGGGCAAGTAATTGACGCTCGCGCTCGGCTTTgagag-----gaaaaaatgaaga-----------aaccgGTTGG---TGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   139370 365 +   386604 --------------------ttttttcattgtagTTT--------------GTATCATACTATAGTCACTTTATAcatcttccttctctttgGCCAAACTAGACAAGTGTTCATTTCGTCTCTATTACGGCAATTATATGCCAAAGAACTGG------TTCCTG----CTTCATGTCA-TATTCATCAAT-AGCCATCTTCTGATGGGCCCCTCAATGCTCTA-TTAAAAAGTTCACGCCTGTCAATCTC------GATTTCACAA-CACTGAC--CACCAATCGGT--TACTAGTTAGCTCTAC---TTC----ATCCTC------AGACACTAATCACGGCTAATCCCAAATGACCATAGTTGAAATGTGGCAGGGCAAGCAATTGA--CACACGCTCGgctttgagag-----aaaaaatagaagg----------gAACCGGTCGC---TGA
i caeSp111.Scaffold622  I 154 C 0
s caePb3.Scfld02_0      2673613 389 +  4147112 --------------------TTCCTCCAGTCTATTTTCCAT--AGATACTAACATCAAACTATAGTCATTTCCTTTGTCTGCCATTTC-ACAGTCAAACTAGACAAGTGTTCATTTCGTATCTATTTCGGTAATTATATGCCAAAAAACTGGTTGTGATTCTCC----CCACGTGTCA-TATCCAtcagtcaacttttttctgatatgtCCC----TGTTCTA-TTGAAAAGTTCACGCCTGTCAATCTC------GATTTCACAA-CACTGAC--CATCTATCGGT--TACTAGTTAGCCCAACAGATTC----ATCCTC------AGACACTAATCACGGCTAATCCCAAATGACCACAGTTGAAATGTGGCAGGGCAAGCAATTGACGCACACGCTCGGCtttgagaggaagaaaaaaatttgaaa----------gaaccGGTCGG---AGA
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold17084  352586 1514 -   375229 I

a score=118639.000000
s ce10.chrX             4444656 176 + 17718866 ATGTGATCTCTGCCC-------TTATATTGTTTCAAAAACGTACTTTTTGTTTTCGTCATTCATCAGCTTAAAATAACCATTGCATTTTTCGACACGACGATAATGGTTTCGAATACGGCGAATATTATCCAAGTGATCATGTTGCCCAGTGGAACCACCTGAAA-------GATAATAT-------------------------------T-----------AAATATATT
s cb4.chrX              9730530 177 + 21540570 --GTGATCTATGCCC-------TTACTTTGTTTCAATAACgtactttttattttcatcgTTCATTAATTTGAAGTAGCCATTGCATTTTTCGACACGTAGATAGTGGTTTCGAATGCGACGGATGCTGTCTAGATGGTCGTGTTGTCCAGAGGTGccacctgaaa-------aattgaaa----------------------------aact-----------aaacatttt
i cb4.chrX              C 0 I 491
s caeRem4.Crem_Contig0  1385490 182 -  4500979 --GTGATCTCTGCCC-------TTATTGTGTTTCAAAAAcgtactttttgttttcatcgtTCATCAATTTGAAATAGCCATTGCATTTCTCAACACGAAGATAGTGATTTCGAATACGGCGGATGTTAGCCAAATGATCACGTTGGCCAGTCGGtccttctgaaa-------acaaaaaa----------------------------attttcgag------gAATATTTA
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold622   139735 186 +   386604 --GTGATCTCTGCCC-------TTactctgtttcaaaaacgtactttttgttttcatcgttcatcaatttgaaatatcCGTTACACTTTTCGACGCGAAGATAATGGTTTCGGATTCGGCGGATGTTTTGAAGATGATCATGTTGACCAGAGGTTCCTCCTGAAT-------GAACAAAT-----------------------------GTTTAGAG-ACAACAAACAAACG
i caeSp111.Scaffold622  C 0 I 15
s caePb3.Scfld02_0      2674002 216 +  4147112 --GTGATCTCTGCCC-------ttattatgtttcaaaaacgtactttttgttttcatcgtTCATCAGTTTGAAATATCCGTTACACTTTTCGACACGAAGATAATGATTTCGGACGCGGCGGATGTTCTCCAAATGATCATGTTGTCCAACGGTTCCtcctggaa-------aaatatattcagGCATTGCTTCAGATTAATAAAGGCAGTTAGGAATACAGTGGAAAATCA
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold17084  354100 190 -   375229 atgtgatttttccccaattttgtactttttttttaatatggtACCTTTTGTTCTCATCGTTCATTAACTTGAAGTATCCGTTGCACTTCTCGACTCGAAGGTAATGGTTTCGGATGCGTCGCATATTCGTCAAGTGATCTCTTTGATGTCTTGCaccgcctgaaattgtttGAAACGTGT-----------------------------TTT-----------TAATACT--
i caeJap4.Scaffold17084 I 1514 C 0

a score=-37844.000000
s ce10.chrX             4444832  81 + 17718866 GGTTTTAGAGA---------------TTTTTTGTTTGA-------------------------------------------------------------AAATTCTATATTTTTAGTATGAAAA------------TTAAAA----------ATATTGTAATG------GTAAAATCACATGG------------------------TA
s caeRem4.Crem_Contig0  1385689 130 -  4500979 AGATCAAGA-----------------AATCTCG-ATGT----------------------------------------CAgaattccaatattttg---aaa---tgactT----GCAAAGGAAACTCAATtacaattgaag--------aaaaaatcctAATTAC---ATTTATTCATTCAGCAGATgctaaaatttttctttcgata
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold622   139936  96 +   386604 CGTTTACAAGC---------------AAACTGATATGA-------------------------------------------------------------AAACCCTTAat------cattgaaa------------ctgaaa------ccAGTAACTGCGACATAA---AGCAATTCAAACAG----------AATTGAATGTTCGAAA
i caeSp111.Scaffold622  I 15 C 0
s caePb3.Scfld02_0      2674257 188 +  4147112 GGTTCAAGAGTGAGGAACAATATCCAAAactga-atgaagaaaagattaAACAAAGTGCAGTTTTATACGTTATCATTCAG----CCAATATCTTGCTCAAACAATTGATT----GCATCGAAAACTCAGTTTT--CTAACATTTCCTTCAGAAACAGTTATGTAACAGATTATATCGtaaag----------aaacaattttattcTA
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold17084  354290  76 -   375229 -gatcttcaaa---------------aaattctcttaA-------------------------------------------------------------AAA---ATACTGTCAAGGACAGAAA------------TTGAGA---------------GTGGTGCGCT--GTCAAATCACCCGC------------------------TA
i caeJap4.Scaffold17084 C 0 N 0
e cb4.chrX              9730707 491 + 21540570 I

a score=-7250.000000
s ce10.chrX            4444913 24 + 17718866 CGTGCC-----CAATCAGATAGATAGGTC-------------
s caeRem4.Crem_Contig0 1385819 27 -  4500979 tTTCAG---AGCACCTGAATAAACAAGTAC------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  140032 37 +   386604 GTAGGCTTCAGCAGTTGATT-----AGTATTTGATCagcttt
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2674445 24 +  4147112 TTTGGC-----CAGCCGAAT-----GGAGT--------CGTC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9730707 491 + 21540570 I

a score=-12243.000000
s ce10.chrX            4444937 16 + 17718866 ---------------------------------------------------TCTAATCGGTCGCAGT-------------------
s cb4.chrX             9731198 16 + 21540570 ---------------------------------------------------TCTAATCACTTGCCGC-------------------
i cb4.chrX             I 491 C 0
s caeRem4.Crem_Contig0 1385846 16 -  4500979 ---------------------------------------------------TCTAAGCCATTGCAAC-------------------
i caeRem4.Crem_Contig0 C 0 I 55
s caeSp111.Scaffold622  140069 86 +   386604 aaaaattgtttctctttctctccctttctcaatttcctgCTGTCACTACTAATTAACAGTTTCTCACATGCGCCTGATCAAAAAGT
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2674469 53 +  4147112 TACCGCTGTTTCATTCTCTCACACTCTCTC-------------CGCTGCCGTCTAATCACTTCTC--------------------C
i caePb3.Scfld02_0     C 0 C 0

a score=2236.000000
s ce10.chrX            4444953 15 + 17718866 GTAATTTAACAAACC
s cb4.chrX             9731214 15 + 21540570 GCTATTTCACAACTC
i cb4.chrX             C 0 I 20
s caeSp111.Scaffold622  140155 15 +   386604 GTCATATAACATGCC
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2674522 15 +  4147112 GTTATGTCACTTGCT
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1385862 55 -  4500979 I

a score=-267.000000
s ce10.chrX            4444968 3 + 17718866 AAG
s caeSp111.Scaffold622  140170 3 +   386604 TGC
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2674537 3 +  4147112 TGC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9731229 20 + 21540570 I
e caeRem4.Crem_Contig0 1385862 55 -  4500979 I

a score=-1184.000000
s ce10.chrX             4444971 4 + 17718866 AACG-
s caeSp111.Scaffold622   140173 4 +   386604 AGAC-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2674540 4 +  4147112 AGAC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  264544 4 +   823664 -AACA
i caeJap4.Scaffold18194 N 0 C 0
e cb4.chrX              9731229 20 + 21540570 I
e caeRem4.Crem_Contig0  1385862 55 -  4500979 I

a score=-1850.000000
s ce10.chrX             4444975 12 + 17718866 ATTCTCCAACAG-----
s caeRem4.Crem_Contig0  1385917 12 -  4500979 ATTCTCTCTATT-----
i caeRem4.Crem_Contig0  I 55 I 29
s caeSp111.Scaffold622   140177 12 +   386604 GGCGTCTTTTGT-----
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2674544 12 +  4147112 ATCGTCTCTCGC-----
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194  264548 17 +   823664 ATCTTCCCACTCCCAAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              9731229 20 + 21540570 I

a score=102598.000000
s ce10.chrX             4444987 106 + 17718866 CGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAAATTTCT----T------------------TTT------TTCCTTTGCTGCAGCAAA-
s cb4.chrX              9731249 104 + 21540570 CGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCgaacttttt----tg----------------catt------tttcgcaAATTCAA-----
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1385958 108 -  4500979 CGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTcgctggttcgattccagCATGAGGcaccgaacttttttttgtg----------------tttt------ttcttctgatacAC-----
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold622   140190 103 +   386604 CGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCaccgaacttttt----tt----------------gttttcgaccTTCTTTT------------
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2674557  97 +  4147112 AGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGaaactttt----tg----------------cttt------ttctttt------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194  264565 121 +   823664 CGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCaccgaaattttt----tggaaatggaGTTCGGtttttt------ttATGTTGCTTCAA----A
i caeJap4.Scaffold18194 C 0 N 0

a score=252725.000000
s ce10.chrX            4445093 697 + 17718866  
s cb4.chrX             9731353 687 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1386066 688 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 131
s caeSp111.Scaffold622  140293 683 +   386604  
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2674654 680 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=236.000000
s ce10.chrX            4445790 2 + 17718866 AT
s cb4.chrX             9732040 2 + 21540570 AA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold622  140976 2 +   386604 AT
i caeSp111.Scaffold622 C 0 I 23
s caePb3.Scfld02_0     2675334 2 +  4147112 aa
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1386754 131 -  4500979 I

a score=546.000000
s ce10.chrX            4445792 2 + 17718866 TA
s cb4.chrX             9732042 2 + 21540570 TA
i cb4.chrX             C 0 I 86
s caePb3.Scfld02_0     2675336 2 +  4147112 ta
i caePb3.Scfld02_0     C 0 I 97
e caeSp111.Scaffold622  140978 23 +   386604 I
e caeRem4.Crem_Contig0 1386754 131 -  4500979 I

a score=0.000000
s ce10.chrX            4445794 1879 + 17718866  
e caePb3.Scfld02_0     2675338   97 +  4147112 I
e cb4.chrX             9732044   86 + 21540570 I
e caeSp111.Scaffold622  140978   23 +   386604 I
e caeRem4.Crem_Contig0 1386754  131 -  4500979 I

a score=313.000000
s ce10.chrX            4447673 26 + 17718866 aaaaaaaaaGTTTCCGTTAACTCTGC
s cb4.chrX             9732130 26 + 21540570 AGAAAAAGAATCGGGTCCAATTTCAC
i cb4.chrX             I 86 C 0
e caePb3.Scfld02_0     2675338 97 +  4147112 I
e caeSp111.Scaffold622  140978 23 +   386604 I
e caeRem4.Crem_Contig0 1386754 131 -  4500979 I

a score=-1687.000000
s ce10.chrX            4447699 3 + 17718866 TCA---
s cb4.chrX             9732156 3 + 21540570 --ATT-
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2675435 3 +  4147112 ---TTA
i caePb3.Scfld02_0     I 97 C 0
e caeSp111.Scaffold622  140978 23 +   386604 I
e caeRem4.Crem_Contig0 1386754 131 -  4500979 I

a score=84212.000000
s ce10.chrX            4447702 209 + 17718866 CTCACTTTGATCAGTGCCATTGTGGTTGCGTATTGCCAATAATGTTGTAGCTTCTTTTTGTCGATCTCGAAAACTTTTGTGTCGGTCTCTATTTTTTGTCCATCTACTCGTCCATCGAACACTTTCCCCCTCACTTGGACTGAAATTATAAATTTTGCCAATATCGTAACCCATTTGCTTTCCTTTTTTCGTAGTGTTCAAAAAGTACC
s cb4.chrX             9732159 141 + 21540570 CTCACCTTGATCATCGCCATTGTTGTAGCATACTGCCAGTACTGCTGTAGTTTTTTCTTGTCGATTTCGAAGATTTTTGTATCTGTCTCGATCTTCTGACCCTCCACACGTCCTTCGAAGACTTTCGCCCTCACTTGGGCT--------------------------------------------------------------------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1386885 171 -  4500979 CCTACCTTGATAAGAGCCATGGTTGTTGCATACTGCCAATACTGTTGTAACTTCTTTTTGTCTATCTCGAACACTTTTGTATCTGTCTCGATCTTCTGTCCTTCCACACGTTCTTCGAACAGTTTCGCCCTCACTTGGACTAAAAACATTAGATTT--------------------------------------TGTTCAGAAACAATC
i caeRem4.Crem_Contig0 I 131 C 0
s caeSp111.Scaffold622  141001 143 +   386604 CTCACTTTGATTAGAGCCATCGTCGTCGCATATTGCCAATACTGTTGaagcttctttttgtctATTTCGAACACTTTTGTATCTGTCTCGATCTTCTGTCCTTCCACCCGCCCATCGAACAGTTTCGCCCTCACTTggactga------------------------------------------------------------------
i caeSp111.Scaffold622 I 23 C 0
s caePb3.Scfld02_0     2675438 143 +  4147112 CTGACCTTTATAAGAGCCATTGTTGTTGCATACTGCCAGTACTGTTGTAATTTCTTCTTGTCTATCTCGAACAATTTGGTATCTGTCTCGATCTTCTGCCCTTCCACACGTCCATCGAACAGTTTCGCCCTCACTTGGACTGA------------------------------------------------------------------
i caePb3.Scfld02_0     C 0 C 0

a score=-2057.000000
s ce10.chrX            4447911 32 + 17718866 TTAAAAATATTTGTTCAAATA-TTTTTGGAAAA
s cb4.chrX             9732300  4 + 21540570 -----------------------------AAAA
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold622  141144 31 +   386604 --aaaagaaacgatttaaatgattttcagagaa
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2675581 22 +  4147112 --AAA------GGTTTcaata---tttagaaaa
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1387056  0 -  4500979 C

a score=-1164.000000
s ce10.chrX            4447943 8 + 17718866 -TTTGAAAA
s cb4.chrX             9732304 4 + 21540570 -TTTG----
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2675603 8 +  4147112 actaaaag-
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold622  141175 0 +   386604 C
e caeRem4.Crem_Contig0 1387056 0 -  4500979 C

a score=-1934.000000
s ce10.chrX            4447951 104 + 17718866 TCTTTGGGAAATTTTTGATTGAATAATGGCAAAAAACACTACTTTATACCGTTTTTTTAATTGAAAATTTACCATCTCAAAAAGTGCCTAACTAATAGAGCAAG
s cb4.chrX             9732308  27 + 21540570 ------------------TTGGCTTattacaaactacagtaattt-----------------------------------------------------------
i cb4.chrX             C 0 C 0
e caePb3.Scfld02_0     2675611   0 +  4147112 C
e caeSp111.Scaffold622  141175   0 +   386604 C
e caeRem4.Crem_Contig0 1387056   0 -  4500979 C

a score=-100.000000
s ce10.chrX            4448055 19 + 17718866 TACAACATTTTAAGGTGCC
s caeRem4.Crem_Contig0 1387056 12 -  4500979 cataagatttca-------
i caeRem4.Crem_Contig0 C 0 C 0
e caePb3.Scfld02_0     2675611  0 +  4147112 C
e cb4.chrX             9732335  0 + 21540570 C
e caeSp111.Scaffold622  141175  0 +   386604 C

a score=-112.000000
s ce10.chrX            4448074 4 + 17718866 AACA
s cb4.chrX             9732335 1 + 21540570 ---g
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1387068 1 -  4500979 ---a
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2675611 4 +  4147112 aaaa
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold622  141175 0 +   386604 C

a score=395559.000000
s ce10.chrX            4448078 930 + 17718866  
s cb4.chrX             9732336 942 + 21540570  
i cb4.chrX             C 0 I 1216
s caeRem4.Crem_Contig0 1387069 906 -  4500979  
i caeRem4.Crem_Contig0 C 0 I 1
s caeSp111.Scaffold622  141175 904 +   386604  
i caeSp111.Scaffold622 C 0 I 607
s caePb3.Scfld02_0     2675615 887 +  4147112  
i caePb3.Scfld02_0     C 0 I 876

a score=562.000000
s ce10.chrX            4449008 102 + 17718866 CATA---AAAGTTCAAATCTTTTTGTGAACTCTGATGGGCTGGAATATGGTTTGGAAATAATGTCTCGCTTGTGTTCTTAACATTGGAAGTTTGGAGTAAATAGT
s caeRem4.Crem_Contig0 1387976  86 -  4500979 CCTGAGTAAAGAACAGATCGTTTT----ATTTTG-------GGAATAGAGTTT-GAACCAACAAATagattg-------aaaactaaaaatctgagATAATTAGT
i caeRem4.Crem_Contig0 I 1 I 635
e caePb3.Scfld02_0     2676502 876 +  4147112 I
e cb4.chrX             9733278 1216 + 21540570 I
e caeSp111.Scaffold622  142079 607 +   386604 I

a score=0.000000
s ce10.chrX            4449110 651 + 17718866  
e caePb3.Scfld02_0     2676502 876 +  4147112 I
e cb4.chrX             9733278 1216 + 21540570 I
e caeSp111.Scaffold622  142079 607 +   386604 I
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=30.000000
s ce10.chrX            4449761 11 + 17718866 TTTTTGCATTT
s caePb3.Scfld02_0     2677378  9 +  4147112 tttttccac--
i caePb3.Scfld02_0     I 876 C 0
e cb4.chrX             9733278 1216 + 21540570 I
e caeSp111.Scaffold622  142079 607 +   386604 I
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=846.000000
s ce10.chrX            4449772 3 + 17718866 CAA
s cb4.chrX             9734494 3 + 21540570 CAA
i cb4.chrX             I 1216 C 0
s caePb3.Scfld02_0     2677387 3 +  4147112 caa
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold622  142079 607 +   386604 I
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=32573.000000
s ce10.chrX            4449775 226 + 17718866 AAACTTTGTCCAG--TCAAACAGTTTTGTTTTCACGCTTCCTCACTTTTCTA----------TGCATA-GTAACGAGATCAAATACTCAAAAAATGGAATCAGGCATCAAC--AACTTTTGAAGATTGA----------GTTTTTTTTCC--AATTTTATTTGGATTTTCTTCCATTAACCAGTTTCGCATCGTTGTTTCTATT--TCCTGTGCCGGAGATCACTGCGGAACCACAAA-----AGTTTTCCGCT----------TTTTAA----------
s cb4.chrX             9734497 235 + 21540570 AAACAAAGTCTAGTATTGTG-----CTGATTTCACGCTCCCTTAATCATCTCATATCCAATTTCCATATCCAATGAGATTCAAAT--------------ATTTGGGTCATCTTGACTTTTGAAGATCAC--AGAAAAG-GTATTCCCTCG-ATCTTTTG----------CTCCCATTAACCAGTTTCGCATCATAGTTTTGGTTCTCCTTCCACCAGAGATCACGC--GAGGCGGAAA-----ATGTTTCATCA-----TTACCGTTTTGcgctttttga
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold622  142686 218 +   386604 AAACACAGTCTAG--TCAGA-----TTGATTTCACGCTTCCTTAATTATTAC----------TGAATA-CAAATGAGGTCAAAACATCAGAAAGTCAACATGTGTGTCATCTTGACTTTTAAAGATCGCCCAACAAAGAGTATTCCCTCG--AATTCTG----------CTCCCATTAACCAGTTTCGCATCgttgttttcattc-cattccgCCAGAGATCACCC------CAAAAA-----GTGTTTCATCT----------GTTTAA----------
i caeSp111.Scaffold622 I 607 I 150
s caePb3.Scfld02_0     2677390 232 +  4147112 aaacaATGTCTAG--CCAGG-----TTGATTTCACGCTTCCCTAATCATCTT----------TGCATA-TAAATGAGATCggaacatcaaaaatccaa-atacATGTCATCTTGACTTTTAAAGATTACCTAACACAG-GTATTCCCTCACCCAGTTTG----------CTCCCATTAACCAGTTTCGCATCGTTGTTTCTATT--AATTCCGCCAGAGATCACTT------CCGAAATGTTTATCTTTCATCTCCCCATTACCGTTTTA----------
i caePb3.Scfld02_0     C 0 I 10
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=546.000000
s ce10.chrX            4450001 2 + 17718866 AA
s cb4.chrX             9734732 2 + 21540570 aa
i cb4.chrX             C 0 I 17
s caePb3.Scfld02_0     2677632 2 +  4147112 AA
i caePb3.Scfld02_0     I 10 C 0
e caeSp111.Scaffold622  142904 150 +   386604 I
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=91.000000
s ce10.chrX            4450003 1 + 17718866 A
s caePb3.Scfld02_0     2677634 1 +  4147112 A
i caePb3.Scfld02_0     C 0 I 14
e cb4.chrX             9734734 17 + 21540570 I
e caeSp111.Scaffold622  142904 150 +   386604 I
e caeRem4.Crem_Contig0 1388062 635 -  4500979 I

a score=0.000000
s ce10.chrX            4450004 7892 + 17718866  
e caePb3.Scfld02_0     2677635   14 +  4147112 I
e cb4.chrX             9734734   17 + 21540570 I
e caeSp111.Scaffold622  142904  150 +   386604 I
e caeRem4.Crem_Contig0 1388062  635 -  4500979 I

a score=1068.000000
s ce10.chrX            4457896 26 + 17718866 TATTGTTTTTCCTTGCTTTTTAAAAA
s caeRem4.Crem_Contig0 1388697 23 -  4500979 TACCGTTTTGC---GCTTTTTGAAAA
i caeRem4.Crem_Contig0 I 635 C 0
e caePb3.Scfld02_0     2677635 14 +  4147112 I
e cb4.chrX             9734734 17 + 21540570 I
e caeSp111.Scaffold622  142904 150 +   386604 I

a score=-922.000000
s ce10.chrX            4457922 2 + 17718866 GT-
s caeRem4.Crem_Contig0 1388720 2 -  4500979 -CC
i caeRem4.Crem_Contig0 C 0 I 12
s caePb3.Scfld02_0     2677649 2 +  4147112 at-
i caePb3.Scfld02_0     I 14 C 0
e cb4.chrX             9734734 17 + 21540570 I
e caeSp111.Scaffold622  142904 150 +   386604 I

a score=6499.000000
s ce10.chrX            4457924 111 + 17718866 GTGTTTTTTC---CACTACACGACCACCGTCATCC-CACTTTGCTGGGTGTCGCCCACC-----CCTTTCGAAT--------------------------GACCGTGTGAATACG------GATTAAAGGAACACAGAATTTCGCAGCGGGA--
s cb4.chrX             9734751 144 + 21540570 GTTTTTTCTC---TACTATACGAACGTGGTCATCCATAC---GAATATCGTTCCCCACG-CTCGTCTTTCCCAggtctgtgtgtgtgtgcgctcg-cgttgtgtgtgtTGAAGAGAGAAGAGGTTAAAGGGAGGCATATTTTTACGGCCGGC--
i cb4.chrX             I 17 C 0
s caeRem4.Crem_Contig0 1388734 142 -  4500979 attttttctccctcACTATACGAACGCCGTCATCCATAC---GGCTATTGTCGCCCACGTCTCGTATTATGGAG------GAGAGAGAGGGGTCGTCTTTGTCTCCGTGGACGGGGGGAG-GTTTCAAGGGAGACACATTTTTCTGCCCTGT--
i caeRem4.Crem_Contig0 I 12 C 0
s caePb3.Scfld02_0     2677651 113 +  4147112 -ttttttctcc--cacTATACGAACGTCGTCATCCACAC------------TGCCTACG-CACGTCTTTTGTTT----------------------AGTAGCCTTTGGGTAAGAGAAGAA-GATTAAAGGGAGGAAGACTTTCGCGG--GGCAG
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold622  142904 150 +   386604 I

a score=221745.000000
s ce10.chrX            4458035 538 + 17718866  
s cb4.chrX             9734895 561 + 21540570  
i cb4.chrX             C 0 I 486
s caeRem4.Crem_Contig0 1388876 561 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  143054 540 +   386604  
i caeSp111.Scaffold622 I 150 C 0
s caePb3.Scfld02_0     2677764 565 +  4147112  
i caePb3.Scfld02_0     C 0 C 0

a score=-2620.000000
s ce10.chrX            4458573  7 + 17718866 ---TTTGCAA--------------------
s caeRem4.Crem_Contig0 1389437 30 -  4500979 TCTATCGGATGTTTACAGCAAAATCGTTCA
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  143594  7 +   386604 ---CTCAGAA--------------------
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2678329  7 +  4147112 ---ttcagat--------------------
i caePb3.Scfld02_0     C 0 I 141
e cb4.chrX             9735456 486 + 21540570 I

a score=-12666.000000
s ce10.chrX            4458580 192 + 17718866 CCAGCTG-----TTGCATTTG-------------------------CTCAGCTGACTTT-------------AATCTTCCGCAAAGCCTTCGCCAACTATAGCAACTTTCCCATTAACTTCCC--------CAATTTCTCTGCGGATTTCAGCTTTCCGCAAGGTCTTCGCTAAGTTTTGCAATTTTTCAACCAACTTCATCATTTTCAAAATTAATCTCGGCTTCTCGCAACTTTTTTGTCT
s caeRem4.Crem_Contig0 1389467 227 -  4500979 CCAACTGGGTTCtcagttttgttttgtatGTGGATTAGCGCATTTCTTAAGTGGGCAGTTTATCCTAATGTGATGCTTTAGAAACTATATGAAGAACTTTAAAAACTAT---ATGAAGTTCGGGCAGGTGAAGATATAATAGAGTACGATGAATTATACCCTGGTGCTTCTCACGCCTAGTAAGT-----ACCAGCAGAATTCTATTCAGAAGTAAACTTGTC--------GCTTCTTCATCT
i caeRem4.Crem_Contig0 C 0 I 21
s caeSp111.Scaffold622  143601 102 +   386604 ---ACTG-----TAGATTTTG-------------------------------AGGCAGT-------------AAGCTTGAAACATAGGATAACAAGTCAATGGAACTGT---AAATGGTTCTG------------------------------------CGTGTTGTTCTGCAACCTCCATAATT-----TGCAGTAT---------------------------------------------
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2678336 141 +  4147112 I
e cb4.chrX             9735456 486 + 21540570 I

a score=-272.000000
s ce10.chrX            4458772 9 + 17718866 ACTTTAACA
s caeSp111.Scaffold622  143703 7 +   386604 ATGTTGA--
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2678336 141 +  4147112 I
e cb4.chrX             9735456 486 + 21540570 I
e caeRem4.Crem_Contig0 1389694 21 -  4500979 I

a score=-771.000000
s ce10.chrX            4458781 21 + 17718866 TCTTATAACCCAACTTTTGCA
s caeRem4.Crem_Contig0 1389715 21 -  4500979 TCTGCTAGCCTAACTTTTGCT
i caeRem4.Crem_Contig0 I 21 C 0
s caeSp111.Scaffold622  143710  4 +   386604 ---------ATGA--------
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2678336 141 +  4147112 I
e cb4.chrX             9735456 486 + 21540570 I

a score=-20141.000000
s ce10.chrX            4458802 121 + 17718866 --ATGGCATTTTCAAAATTGCTGAAGTTGGTTAAAAAGTTACAAATTGCCGAGCAGTATTTCAAACATTGAAAAGTTTGT--------------------TTCTAACATGGtattattaatttttttttgataaatcaaaata-------------
s caeRem4.Crem_Contig0 1389736 134 -  4500979 TTGTTGCCCG-----------AGAGATCGATTTAAGGAGAACAATA---AGAACAG--ctt----tatgaaaatattttctgaatcttGAACCTAGCCAACTGAAACATTGTAAACCGCATTTTTCAT--ATTGATGACACCACATCAAATCAATC
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  143714  47 +   386604 ----AGCATC---------------ATCAAAATAACCATCATAGAT---ATATC-----------TATTCAAATTTACTT----------------------------------------------------------------------------
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2678477  56 +  4147112 --GTGATATT-----------TGCGATCTAGCTCAACACTACGAAA---CAATCG----TT----CACACAAACATTTTC----------------------------------------------------------------------------
i caePb3.Scfld02_0     I 141 C 0
e cb4.chrX             9735456 486 + 21540570 I

a score=148652.000000
s ce10.chrX            4458923 320 + 17718866 ttaatttCAGGTTCTCAACGAGTACTTCCACAATGTGTGCGAGCTCGATTTGGTGTTCAACTTCTACAAAGTGTACACAGTCGTCGACGAGATGTTCCTTGCCGGCGAGATCCGTGAAACGTCACAAACAAAGGTGCTCAAACAGTTGCTCATGCTTACTTCCCTGGAATAGA------CAGTCAAGA-------------------TGGACCCGTTC-AAACATTGAAACACTCTGTAGAAA---CAATTAATT--TATT----TGCTCTTTCTGCCATAATTTGTA-------TTCCGGAAATTCACTTGTCATTATGATTTTTCAACaatatttatttaatagattattttcttttttt
s cb4.chrX             9735942 321 + 21540570 tcattttcaggtGCTCAATGAATACTTCCACAACGTGTGCGAGCTCGATTTGGTCTTCAACTTCTACAAAGTGTACACCGTCGTCGACGAAATGTTCCTGGCCGGCGAGATACGTGAAACATCGCAAACCAAAGTGCTCAAACAACTACTCATGCTCACTTCGCTGGAATAGGATCGATCACCCAAAT-C----------------TCTCGCTCATCCGTACC-------GATTATGTAGata---taatttatt--tatttacaaCTGCTTTCTGCCATAATTTGTATTCTCAATCCCGAAATTTCACTTGTCATCGTTGTTTTTTGGCG--GTTTCTCTC-------GTTTatttat---
i cb4.chrX             I 486 C 0
s caeRem4.Crem_Contig0 1389870 321 -  4500979 TTATTTTTAGGTGCTCAACGAATATTTCCACAACGTGTGCGAGCTTGACTTGGTTTTCAACTTTTACAAAGTGTACACTGTCGTCGATGAAATGTTCCTGGCTGGTGAAATCCGTGAAACTTCTCAAACCAAAGTGCTCAAACAGCTTCTGATGCTCACTTCTCTCGAATAGG------CCTCCAAGT-TCTAATACC-------GTTTGATTCGTGC-TACC-------GATTATGTAGATA---TAACTTATT--TATT----ACCGATTTTTGCCATAATTTCAAT------TCCCTGAATTTCACTTGTCATTAT--GTTTCCGACA--TTTTGTTTATTAGAtgattaatttatttt
i caeRem4.Crem_Contig0 C 0 I 1316
s caeSp111.Scaffold622  143761 321 +   386604 ----CTTCAGGTTCTCAACGAATACTTCCACAACGTTTGCGAGCTCGACttggttttcaatttctacaAGGTGTACACTGTCGTCGACGAGATGTTCCTTGCCGGCGAAATTCGCGAAACTTCTCAGACCAAAGTTCTCAAACAATTGCTCATGCTCACTTCACTTGAATAGG------ATACCAAATATTCAGTCCCC------GTTCGACACTCTC-ATCC-------CATTGTataaatacagtaatttatTACCGCT------TTTTCTCTGCCATAATTTAAA-------TTCCACAATTTCACTTGTCATTAtgttcttttta----tttattttattagaaaattaatttattta
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2678533 323 +  4147112 ----CTTCAGGTTCTCAACGAATACTTCCACAACGTCTGCGAGCTTGACTTGGTGTTCAACTTCTACAAAGTATATACTGTTGTCGACGAGATGTTCCTTGCTGGCGAGATTCGTGAAACTTCGCAAACCAAAGTGCTCAAACAACTGCTTATGCTCACTTCTCTCGAATAGG------ATACCGAAT-TCCAGCCGCCGGCACAGTTCAACACGTTC-ATCC-------CAATGTATAGATA---taacttatt--tatt------tttgctctGCCATAATTTGTA-------TTCCAGAATTTCACTTGTCATTATGCCTTTCTGAGG--TTTTATTTATTAGTTGACTAATTTATTCC
i caePb3.Scfld02_0     C 0 C 0

a score=-3720.000000
s ce10.chrX            4459243 26 + 17718866 tttaaaCAATGAGCTCAAGTTTGCAG-
s cb4.chrX             9736263 26 + 21540570 -tttagaaaaataatttattttgatAG
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold622  144082 20 +   386604 ------caTGAAgttgaaagttgaaa-
i caeSp111.Scaffold622 C 0 I 23
s caePb3.Scfld02_0     2678856 15 +  4147112 ------GA-----TTTTAACTTGATA-
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-1735.000000
s ce10.chrX            4459269 23 + 17718866 TGAAGCAGGAAAAAGCTTTAAAC
s cb4.chrX             9736289  9 + 21540570 -----TA-GCA-----TTTA---
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0     2678871 16 +  4147112 TGA--TATGAA-----TTTGAAT
i caePb3.Scfld02_0     C 0 I 21
e caeSp111.Scaffold622  144102 23 +   386604 I
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-16146.000000
s ce10.chrX            4459292 105 + 17718866 GAGGGCTAAATAGGTAAAGTTTTGTGCGTCTAGTTAGATATTAA---ATTTCATGATGAAACTTTTTCTAAAATCCTGA---------------AA-----TTATG--ATTAGATTTGCAAGAAGCCGAT
s cb4.chrX             9736298  74 + 21540570 TGttatgaat------caatttt-tgct----------tttcaatGCGTGTCTTGTAAA---------------ACAGC---------------GA-----GCACG--GTTTCAT--TTCAGAAGCAGAT
i cb4.chrX             C 0 I 51
s caeSp111.Scaffold622  144125  85 +   386604 GTGGGCGAACTAGCTGAAA---------------------TCAA---ATGGATTGCGAA---------------GCAGAGTCATTACCATGATGAACATTTGCCTATTGTTCTAGTGTTAAAAA------
i caeSp111.Scaffold622 I 23 C 0
s caePb3.Scfld02_0     2678908  84 +  4147112 GTTTGTGTAC--GTTGGGATTGA-TGC------------TTCAA---ATCTCTTGGGAAAAC-----------TGCGGA---------------AAAATTTGCCTA--GTTTGATCCTCATGAAGCCGGC
i caePb3.Scfld02_0     I 21 C 0
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-3191.000000
s ce10.chrX            4459397 45 + 17718866 TTG-AATATATC-AGAGCAAATATTGTGATCTGCTGAAATTAAAAAC
s caeSp111.Scaffold622  144210 28 +   386604 ----AGTATCCCAAGAATAATCATTCAG--------TCAT-------
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2678992 46 +  4147112 CTTCATTGTCTTGAGGAT-TTTATTCAGAAGCAGTTTGATGGAAAGC
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9736372 51 + 21540570 I
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-1725.000000
s ce10.chrX            4459442 18 + 17718866 CAGAACTTTCAAATTCAA-
s cb4.chrX             9736423 18 + 21540570 CAACACTTCCAAATTCTA-
i cb4.chrX             I 51 I 89
s caeSp111.Scaffold622  144238 12 +   386604 -----TTTTG--AGTCCAG
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2679038 16 +  4147112 -AATATCTCC--ATGCCAG
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-5783.000000
s ce10.chrX            4459460  54 + 17718866 TGTTGCCGGAGGTATTCTAAGAA-----TCTT------GAAG-GT-TTAAACTATACGTATGTAAAT------------------------------------------------
s caeSp111.Scaffold622  144250  53 +   386604 TCGTT-----GAAGTTCTAGCCA-----TTCTATT---GAATTGT-TTaagcaatatttttcaaaat------------------------------------------------
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2679054 113 +  4147112 TGTTT--ATAGGAACTTTCACAACAGTGTTTCATTTGAGAAATGTAATAAGAAAAGCGTTTCGAAAGAACGATGAAATGGCAAATTGTGAACTAAAAACATTGTTAACCGTAGAT
i caePb3.Scfld02_0     C 0 I 52
e cb4.chrX             9736441  89 + 21540570 I
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-700.000000
s ce10.chrX            4459514 49 + 17718866 TCCTCTTTTGATTTCTTTTGTTTACTTCTGTAAAAATATGATTTCTACA
s caeSp111.Scaffold622  144303 20 +   386604 t----------------------aactcagaaaaaatacGAT-------
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2679167 52 +  4147112 I
e cb4.chrX             9736441 89 + 21540570 I
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=323.000000
s ce10.chrX            4459563 16 + 17718866 TTCAAATTCAAATTCA
s caePb3.Scfld02_0     2679219 16 +  4147112 TTCTACTTCGGGTCTG
i caePb3.Scfld02_0     I 52 C 0
e cb4.chrX             9736441 89 + 21540570 I
e caeSp111.Scaffold622  144323  0 +   386604 C
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=546.000000
s ce10.chrX            4459579 2 + 17718866 AA
s cb4.chrX             9736530 2 + 21540570 aa
i cb4.chrX             I 89 C 0
s caePb3.Scfld02_0     2679235 2 +  4147112 AA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold622  144323 0 +   386604 C
e caeRem4.Crem_Contig0 1390191 1316 -  4500979 I

a score=-4065.000000
s ce10.chrX             4459581 10 + 17718866 TATG----------------------------AATTCT
s cb4.chrX              9736532 10 + 21540570 tctg----------------------------aaattt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   144323  6 +   386604 --------------------------------AAAGGC
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2679237 38 +  4147112 TAACTGAGCTTATCACAGTGttgaagagaaggaaatgt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18206   17551 10 +   129353 TACA----------------------------AACTAT
i caeJap4.Scaffold18206 N 0 C 0
e caeRem4.Crem_Contig0  1390191 1316 -  4500979 I

a score=-19716.000000
s ce10.chrX             4459591 346 + 17718866 ACATT-CAAAGCTAAAACTGATACAAAACCTGATTT---------------ATGAAA--ACAA--------------------TACA---------AATAAACGCAA--------TTTTCTGAGTGAAA-------TGGTGTTGAAAATATGGCAAAACTGAAGTC---------------------GTATGAAAA------------AC----------AATTTG-AACCGTA----GAGAAAACAACGCTAATTTAC-GTGAGT---------TGGATCGA--------TGTGAAGACGAAAGAGAAGAGTAAACGTATACAGATAACAAGAAACACTTGAAAAAAAACACAAATTT--------ACAATATATTTTCAT--------------GAAGATTTACTTCCATAATGTGACAAATTTTTGCTTGCTCGATGACAACAGTCCGTATCCTGTTGGGTTCCATGAAAGTGAGAATATGGCATTTCTGAAA
s cb4.chrX              9736542 332 + 21540570 --gtc-taaaa-----atgcctaaaaa--caacttc---------------ataaa---aaaa--------------------ttca------ttgaagAGTCATGA--------CGTTCAGAAAGAAGTGACCAATTTTTGTGGCAAAGT------------GCATTTT-----------------ACATGAAAA------------AC----------AATGTG-AGAAACA---TAGGGGCACAATTCGAATCGCTAGatagtttctaaaaataaaatgatttttttttgtgttaaagGGATTATTTAC---------AGTATGAGtggaagaaaacaaaaatat------------------------acaaGTACAC--------------AAAAAATTACTTCCAGAGggtgacaactttttgtttgcTGGAAGAGAGCAGACCATATCCGGTCGGGTTCCAGGACAAAGAGAAGATGGCATTTCTGAAA
i cb4.chrX              C 0 I 87
s caeRem4.Crem_Contig0  1391507 342 -  4500979 acatt-gaaaacttttatcGGTAAAGATTTGAATTT---------------GCAAAGATAAAG--------------------TATA------CAAAGTATTCGTAAG--AAAACGGTCCTGAAAGAAG---------TTTGAAATGGATTGG--------AAGTAGTTG-----------------GCAAAAAGA------------AT----------CAAATG-AAAGAAA---TGCTAGC------CGTGTTGATAGAAATT---------TGAATCGA-------TTGCGGTAATGAAGTGAATTAC--------------GAATGAAAACAACTTAACATGTTAGATAC--------------AAGGCAAGTGtacattgttgaaaaatgaaaacattatttccATAAAGTCACAACTTTTTGCTTGCTTGAAGATAGAAGACCGTATCCAGTTGGGTTCCAGGATAAGGAGAAGATGGCGTtactgaaa
i caeRem4.Crem_Contig0  I 1316 I 70
s caeSp111.Scaffold622   144330 283 +   386604 TTATT-TCAAA------TGACTA----------------------------ATAAGC--AAAA--------------------TGCG------TCTAGTAGTTTTGAT------------------GAA------ATGgtcgagaaaaaatgg-----caAAAGTA---------------------AGATGAAAC------------AC----------AATGTG-ACACGTA----AGAAGC----------------GAAAGT---------CGAATCTG---------GTAGTGGAGATATAAGT------------ATTGACATTGTAG-AAATGTGACAAGATATACATAG------------AATACATATGAAC--------------AGAGAATTATTTCCAAAGAGTGACAACTTTCTGCTTGCTGGAGGAGAGCAGGCCGTATCCCGTTGGATTCCAGGAGAGTGAGAAGATTggatttctgaaa
i caeSp111.Scaffold622  I 1 I 16
s caePb3.Scfld02_0      2679276 402 +  4147112 ttgttatcaaa--------actaTATA---GTCTTTGGTGAGGCCTCAGACAcaagg--aaaaacatttttgctgCTTTTTTGTGCGCAGTCTTCTGCTAATCCTGGCCCTTTTCTGtcaaaactgaag------atttttgaCAGGAAATCG-AcatccaaaacattttctttttctccaaagcACTGCTTAAACCAGCTATTCTCTAC----------AATCTGTTCAAGTATCATGAATGC----------------AAAAAT---------TCTATAGG--------AGTGATGAATGTACAGGTGAGtaaaa----gctgaaaatggagaaaaaaaaacaagaaatataca-------------aataaaaatgaac--------------ataaaatcatttccaaagggccacaactttttgtttgcTTGAGGATAGCAGGCCGTATCCAGTTGGGCACCAGGAAAGTGAGAAGATGGgctgtctgaaa
i caePb3.Scfld02_0      I 1 I 76
s caeJap4.Scaffold18206   17561 297 +   129353 TCATT-TCAAG-------TGAAACAAAGTTTTATTT---------------ATGTAT--ATAA--------------------AACT------GGCAACTGCTGTGA--------------GAAAGAAT---------------ATGAAATTG----------GAACCGT-----------------GGATGAAAA------------ACGCAAGAAGGAACCgtc-aaaaaaa----ggaaacat--------------aAAATT---------TCAATCAA--------------------------------------GCATATCAAAAAGCTGATCAAGGATGCGgtagacaatttttttttgaaaaaatatttatat--------------acAAAACTATTTACACAGAACCACCGCTTTCTGCTTGCCTGAGGAGAGTAATCCGCATCCAGTTGGATTCCACGAAAGCGAGAAGATTGAATgtctgaaa
i caeJap4.Scaffold18206 C 0 C 0

a score=-7137.000000
s ce10.chrX             4459937 22 + 17718866 ATATGGTTTTAAAATA----------------------------GTTTTT
s cb4.chrX              9736961 43 + 21540570 gttTCTTAATCGGATGATTTTCCGTACCGAA-------GAATCTATTTTT
i cb4.chrX              I 87 I 18
s caeRem4.Crem_Contig0  1391919 23 -  4500979 GTTTTGTCGTTTGACA---------------------------TATTCTT
i caeRem4.Crem_Contig0  I 70 I 12
s caePb3.Scfld02_0      2679754 23 +  4147112 GTTCGGTTGTC-GATA--------------------------TTACTTTT
i caePb3.Scfld02_0      I 76 I 1
s caeJap4.Scaffold18206   17858 38 +   129353 aaatgatactcGTACA------------AAAAGTAAGTGAAGTGGTGTTT
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   144613 16 +   386604 I

a score=-6187.000000
s ce10.chrX             4459959 11 + 17718866 GGAAAA--------------CAAAA
s cb4.chrX              9737022 25 + 21540570 TAAataaatcacaatttttctaaat
i cb4.chrX              I 18 I 3
s caeRem4.Crem_Contig0  1391954 11 -  4500979 CAAAAA--------------TGCAG
i caeRem4.Crem_Contig0  I 12 I 3
s caeSp111.Scaffold622   144629 11 +   386604 gaaaaa--------------tgaat
i caeSp111.Scaffold622  I 16 I 3
s caePb3.Scfld02_0      2679778 14 +  4147112 GCAAGA-----------GTTTGAAC
i caePb3.Scfld02_0      I 1 I 148
s caeJap4.Scaffold18206   17896  1 +   129353 --------------------T----
i caeJap4.Scaffold18206 C 0 C 0

a score=126746.000000
s ce10.chrX             4459970 161 + 17718866 ACTCACTCCGAGTTACTGCAAAGCTGTTTTTCTAGCTTAGTACTATTTCTATTCCAGACGAAGATGCTTCCATTCGAACTTCCTGCAGCGACGTATTCATTTCCGGATGATAAAACAACTCTTGAAAGGTCGGAACTAGTACGGTAGTTTTCCGCGCTGAA
s cb4.chrX              9737050 161 + 21540570 accCACTCAGAACTGCTTGTCAGTCGTTTCTCGAGTTTGGCGCTGTGTTTATTCCAAATGAAGATGGAGCCATTCGAGCTTCCGGCAGCTACGTACTCGTTTCCAGAAGAGAGAATGACTCGTGATGTGTCCGAACtggtacggtagttttcagcgctgaa
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1391968 161 -  4500979 ACTCACTCAGAACTGCTAGACAGTCGTTTCTCCAGTTTCGTGCTTTCTTTATTCCAAATGAAGATTGATCCGTTTGAACTTCCAGCCGCTACATACTCATTTCCAGACGACAACACAACTCTCGAAAGATCCGAACTTGTACGGTAGTTCTCAGCACTgaa
i caeRem4.Crem_Contig0  I 3 I 1415
s caeSp111.Scaffold622   144643 161 +   386604 gcTTACTCAGAACTGCTTGATAACCGTTTCTCGAGTTTTGTTGTGTTTCTGTTCCAAATGAAAACGCATCCATTTGAACTGCCAGCAGCAACGTACTCATTCCCAGATGACAAGATGACACGTGAAGAATCAGAACTTGTGCGATAGTTTTCGGcgctgaa
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2679940 161 +  4147112 ACTTACTCGGAATTAGATGCCAATCGTTTCTCCAGTTTGGTAGTGTTCCTGTTCCAGATGAAGATGCAACCATTTGAGCTTCCAGCAGCCACGTACTCATTGCCAGAGGATAAGATGACTCGAGAAAGGTCGGAGCTTGTGCGATAGTTCTCGGCGCTGAA
i caePb3.Scfld02_0      I 148 C 0
s caeJap4.Scaffold18206   17897 157 +   129353 ----ACTCTGTTCGGGTCGGCAGACTTTTCTCCAGCTTCGTACTGTTCTTGTTCCAAATGAAAATTCCTCCGTTTGCACTTCCGGCAGCCACGTATTCATTTCCAGCCGAAAAAACAACCTGTGACGTGTCAGAGCTTGTTCGGTAGTTCTCGGCGctaaa
i caeJap4.Scaffold18206 C 0 I 26

a score=910.000000
s ce10.chrX             4460131 1 + 17718866 A
s cb4.chrX              9737211 1 + 21540570 a
i cb4.chrX              C 0 I 4503
s caeSp111.Scaffold622   144804 1 +   386604 a
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2680101 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold18206   18080 1 +   129353 A
i caeJap4.Scaffold18206 I 26 C 0
e caeRem4.Crem_Contig0  1392129 1415 -  4500979 I

a score=-17366.000000
s ce10.chrX             4460132  33 + 17718866 ------------------ATGTAGAATTAG---TAAT------------------------------------------------TGCTCATTCACTATACT-----------------------------------------------------------------------
s caeSp111.Scaffold622   144805  36 +   386604 ------------------acaagaaataagAGCTAAT------------------------------------------------TTACCACCATCCCAGTT-----------------------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2680130  24 +  4147112 ------------------ttcaaagattatAACTA------------------------------------------------------------CTCTTTT-----------------------------------------------------------------------
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18206   18081 173 +   129353 ATGTGCTCAGAAGCGAAATTCAGCAATTTTGActagtgcgctccgttgaactcggcggaaaaaatcttggcagtgtgccattttatgcgaattcacatttttcgtaACGAATTTTTGAGCCGCAGCGCGTCGCCATTGACGGCAAAAATGagtgtggaaaaaaaaggcaaacg
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9737212 4503 + 21540570 I
e caeRem4.Crem_Contig0  1392129 1415 -  4500979 I

a score=566.000000
s ce10.chrX             4460165 2 + 17718866 TC
s caeRem4.Crem_Contig0  1393544 2 -  4500979 TC
i caeRem4.Crem_Contig0  I 1415 C 0
s caeSp111.Scaffold622   144841 2 +   386604 TA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2680154 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   18254 2 +   129353 cC
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9737212 4503 + 21540570 I

a score=272665.000000
s ce10.chrX             4460167 518 + 17718866  
s cb4.chrX              9741715 471 + 21540570  
i cb4.chrX              I 4503 C 0
s caeRem4.Crem_Contig0  1393546 465 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622   144843 476 +   386604  
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0      2680156 458 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18206   18256 512 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=-4135.000000
s ce10.chrX             4460685 16 + 17718866 -------GCCTGAAACCAGGATG--
s caeRem4.Crem_Contig0  1394022  8 -  4500979 -------------TCTCAGGA----
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   145326 16 +   386604 -------ACCATAAGCCTGGATG--
i caeSp111.Scaffold622  I 7 C 0
s caeJap4.Scaffold18206   18768 25 +   129353 gttttaaaatatagtattgagtggg
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2680614  3 +  4147112 I
e cb4.chrX              9742186  0 + 21540570 C

a score=-34417.000000
s ce10.chrX             4460701 108 + 17718866 GGTCTCACTAAT-TCTCagcaaatgtga------------------------------------------aacccggcca-------------aaaatattgtatc-----ccacagaatttgatttttcgta-----------------------gaaaatt-------------cgaaaaa---------------------------------------------aaattcttatga-----------------------------aaaatttaaa
s caeRem4.Crem_Contig0  1394030 162 -  4500979 Ggctttatcaat-tttctgcgtctctat-----------ctc--tctgtGTAATACTTTGT-TCAgttgaaacaaatgaa-------------aaaagaagatatt--gagTCAGAGCTTGTCAACTACCTCA-----------------------AAATGCT-------------CTGTGATC-GTTCGTTTTTTCTG---------------------CTTGTTGCAAATCAATTCAA-----------------------------TCAGTTTATG
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0      2680617  32 +  4147112 ----------------------------------------------------------------------AATCCAGCAA-------------AACACGaggtatt-----tcaga----------------------------------------------------------------------------------------------------------------aaat-----------------------------------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18206   18793 279 +   129353 ggatttacgaatatcacatcgaaatcgcaaaaaaaaaaccttgatttttgccaaactttacaacaacaaaaaaaagaccacggggagtacacgaagatgAAGTTTCataggccagcgcgcccgaTTTTCTACGCCGGCGGCAGGcaacgtcttttcgaaaactgtattttcatCAGCAACAATCGGTTTGTTTCTTCTATtccctttattttttttccattttttgataaattatttacaaatcggccaaaaattgcgccaggtaaaCGAAAATGTAAG
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9742186   0 + 21540570 C
e caeSp111.Scaffold622   145342   0 +   386604 C

a score=-49031.000000
s ce10.chrX             4460809 123 + 17718866 ttgttgccaaGT------------TGTTTTGTA---------CCCGCCATTGACCTAC-----------------------------------------------------------GTTTCAGTTGCGACGTTTA---------------AATTCTTAGAGATACAGAAAT----------------GTCA-------AACTATCAGTAAATGTAACG---------TTACCCACCAAAAGCCGAGAGT
s cb4.chrX              9742186  36 + 21540570 ---------------------------------------------------------------------------------------------------------------------------------------------------------TTAT------------------------------------------TGCTG---------ACCGCA----------AACGAACCATCAGACGAGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1394204 149 -  4500979 TTCATAACAATT------------TTCTCTGCA------------GCAACTGAACGATTAAA---CAAATAAATG-ATTC----------------------------AGTGGTTACAACGGAATAGAACTTCCAC----------------CTTATCATAGAAGCTCTCCC----------------ACCACTGTGTGTGCTGCCAA----TATCGCA---------TTACTCACCATTAAACGTGATG
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0      2680649  68 +  4147112 ---------------------------------------------------------------------------------------------------------------------gattgttttgagCTCCCTC---------------AATTTTCAA---------------------------------------CGCTTCAAAC--TTTTCGTG---------AAGCTTACCATAAGCCGAGACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   19072 243 +   129353 TtgtttccatttcaaaaaagaacattttcagggaaaaaaatgctggcatccggtttcctaggcttcgacttcgtgtactccccgtggtcttctgtttttatttgtaaaaatcattaaaaatcagagaaacttttttgtgcgatttcaatgtgattttcataaatcccccactcaatacTACATTTAAAgcca-------tttttcccaaaaatttggcacctcctttaaaacGTACAAGTAGCCGAGATG
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   145342   0 +   386604 C

a score=63847.000000
s ce10.chrX             4460932 135 + 17718866 TATCCAAATTCCAAATCCGAACATTCTTGTCATTAGAAGATGCAATAAAATGCTTCCGATCTCTTTCATAGTCTATCCTAGTGAATGCAGCATTACTGCCAGCGAGTGTTCCACTGAAATATGTG-----------------------------------------------------------TTTTTATATT
s cb4.chrX              9742222 128 + 21540570 TGTCCAGGTTCCACACCAGCACATTTTTGTCGTTTGAAGATGCGATGAGCAATTTTCTATCTCTCTCATAATCGATCCTGGTGAATGATGCGTTACTCCCAGATAATGTTTCTCTGTAACCTCAC-----------------------------------------------------------ATT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1394353 135 -  4500979 TGTCAAGATTCCAAATTCTAACATTCTTGTCGTTTGAAGACGCAATCAGAAACTTTCTATCACGATCGTAGTCAATTCTTGTTAGGGCTGCATTGCTTCCAGCAAGAGAATCGCTGTaaaaaaaC-----------------------------------------------------------ATCTTTAGTT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   145342 135 +   386604 TATCAAGGTTCCATAACCTAACGTTTTTATCGTTAGATGAAGCAATCAAATGTTTTCGGTCCCTCTCATAGTCAATTCGTGTGAATGCAGCGTTGCTTCCAGCCAGAACATCTCTgcaaattatt-----------------------------------------------------------attttctttt
i caeSp111.Scaffold622  C 0 I 171
s caePb3.Scfld02_0      2680717 194 +  4147112 TGTCGAGATTCCAGAGCCGAACGTTTTTATCATTTGATGATGCAATCAGATGTTTGCGATCTCTGTCGTAATCTATCCGAGTGAATGCAGCGTTACTTCCAGTGAGGGTTTCTCTgtaaataatttcattttacCTAGTTAGGCTGGTGAAGCGTGTTTGATTATGAGTACAAACACGGTActcattctcttct
i caePb3.Scfld02_0      C 0 I 59
s caeJap4.Scaffold18206   19315 135 +   129353 ATTTCAAATCCCAAACTCGAATGTTTTTGTCATTGGAGGAAGCAATTAGATGTAGCCGTTCCGCGGTGTAGTCGATTCTTGTAAATGCAGCATTACTTCCAGTTAGGGtatttctgaaaaagaaa-----------------------------------------------------------actaaaaatt
i caeJap4.Scaffold18206 C 0 I 1

a score=-8004.000000
s ce10.chrX             4461067 17 + 17718866 AAACAGA----------------------------------ATACGTTTTC
s cb4.chrX              9742350  9 + 21540570 ------------------------------------------CAATCTTCT
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1394489 10 -  4500979 -----------------------------------------ACAAAGTTCT
i caeRem4.Crem_Contig0  I 1 I 10
s caePb3.Scfld02_0      2680970 51 +  4147112 gaaaaaaaaacgaaagattGGTCGTCATCCACGGGTTTTACATAAACTTTT
i caePb3.Scfld02_0      I 59 I 101
s caeJap4.Scaffold18206   19451 11 +   129353 -------------------------------------caacaaaaaat---
i caeJap4.Scaffold18206 I 1 C 0
e caeSp111.Scaffold622   145477 171 +   386604 I

a score=100241.000000
s ce10.chrX             4461084 141 + 17718866 ----AAAATAA-------GCTCACATTCTAGTGTATCCCCCGTGTCCATCGACTTTCCAAATCTTGATATTCCGGTCAGATCCTCCAGTCGCAAACGTTTCTCCGTCGAGCCAATGAACATCGTTTACTTCTCCTTCCTCACACTCCTAAAA
s cb4.chrX              9742372 137 + 21540570 ----AGTAT---------ACTCACATCCGTGTCTGACCTCCATGTCCATCCGTTTTCCACACTTTTATTTTCCTATCTGATCCTCCAGTTGCAAACGTTTCCGCGTCGAGCCATCTTACATCATTTACTTCTCCTTCATCGCATTCCTG--T
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0  1394509 133 -  4500979 -------------------CTTACATTCTTGTTTGTCCTCCATGCCCATCAGTCTTCCAAATCTTAATTTTCCTATCCGATCCTCCAGTAGCGAACGTTTCCCCATCCAGCCAATGTACATCGTTTACTTCTCCCTCGTCGCACTCCTGaat
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold622   145648 141 +   386604 ----TGAATTA-------ACTGACATTCTTGTTTGCCCGCCGTGCCCGTCcgttttccatatttttattttcctgtCCGACCCTCCGGTCGCAAACGTTTCTCCATCGAGCCACAAAACATCATTCACTTCTCCTTCGTCACATTCCTAAAT
i caeSp111.Scaffold622  I 171 C 0
s caePb3.Scfld02_0      2681122 148 +  4147112 ----AGAATTGATGCTTCACTTACATTCTTGTCTGACCTCCATGTCCGTCTGTCTTCCAGATCTTAATCTTCCTATCTGACCCTCCGGTGGCAAATGTCTCTCCGTCAAGCCAGTGGACATCGTTAACCTCTCCTTCGTCACATTCCTAAAT
i caePb3.Scfld02_0      I 101 C 0
s caeJap4.Scaffold18206   19462 145 +   129353 aatgaggAGTT-------ACATACATTTTCGTCGAACCACCATATCCATCCCATTTCCAAACTTTTATCATTCTGTCAGAACCTGCCGTGGCAAACGTGTCCTCGTTCAGCCAATGTACATCATTCACCTCACCCACTTCGCattcctggaa
i caeJap4.Scaffold18206 C 0 I 1013

a score=-6137.000000
s ce10.chrX             4461225 48 + 17718866 T---TTCAAATCTTAAAGTGAATAGCTCATTAAATATATATTTACCAAGAC
s cb4.chrX              9742509 48 + 21540570 GATTTCATATTTTACAAATGAA--ATTTCTTTCAGGAAACCT-ACAAAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1394642 45 -  4500979 actttttcattttaacaataag------ttttcagataatctCACAAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   145789 44 +   386604 TCAGTTTTGATA-AATCACAAG---CTACTGT---ATTAACTGACAAAGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2681270 45 +  4147112 C---TCTCGATATGATAGtaaa---ctattttcagacaaccctacaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   19607 1013 +   129353 I

a score=61310.000000
s ce10.chrX             4461273 92 + 17718866 AAACTCTGCGCGGGATGGCACACTGTCGCCAAGAAGTAAATCTCCATTAGAATTGGTATCAGGCATAGCACGCAACATTTCTTCTCT--AAAAA
s cb4.chrX              9742557 92 + 21540570 GAACTCCGCTCTCGAAGGAATACTATCGCCAAGGAGTAAGTCACCATTAGAATTAGTCGCGGGCATCGCTTTCAGCATTGcgtctct--gaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1394687 92 -  4500979 GAACTCGGCCCTCGACGGAAGACTATCGCCAAGAAGTAAGTCCCCGCTAGCATTCGTTTCTGGCATTCTTTTCAACATGGCTTCtct--gaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   145833 94 +   386604 GAATTCTGATCGCGACGGGAGACTGTCTCCAAGAAGTAAGTCACCATTTGCATTTGTTTCTGGCATTTTCTTGAGCATCGcctctctgaaaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2681315 92 +  4147112 aaattctgatCTTGAAGGTAGACTATCTCCGAGCAGCAAATCACCATTTGCGTTGGTTTCCGGCATTCTTTTTATCATTGCTTctct--aaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   20620 92 +   129353 AAACTCCACGTGGGAAGGGACACTGTCTCCCAGAAGCAAGTTTCCTTTCGAATTCGTCTCCGCGGTGGCGTTTAGCATTGCTGctct--aaaaa
i caeJap4.Scaffold18206 I 1013 C 0

a score=-19529.000000
s ce10.chrX             4461365 107 + 17718866 ------------------TATAATTGATTAAATATGAAATAATTCAATAAAATGTTTGAAAATTGCCATTTGTTAATTTTTCCGAAAAACATCAAATTTTAGTCAGTTTTCTTTCGGATTTGTCC------------------
s cb4.chrX              9742649  24 + 21540570 -----------------------ttcgtt------------------------------------------------------gCTGAATGt------------------------gatctggaa------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   145927  24 +   386604 ------------------tctaattagT-----------------------------------------------------------GACAg------------------------gatttgagt------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2681407  29 +  4147112 ------------------tatatttcgtT------------------------------------------------------TGAAGCCAT------------------------GATTTAACT------------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18206   20712  73 +   129353 taaaacaaacaattgaatttttttttgtt----------------------------------------------gttgttgttgaaataAT------------------------GAATTAATTTACACTTTCTCGTCTTTG
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1394779   0 -  4500979 C

a score=58127.000000
s ce10.chrX             4461472 382 + 17718866 AAAACTTTTTTCAAACGTTT--------GCCTATATTTTATTTTCTAGTTTTGAGTTTAGTTTTGATTTAAAAACTTAGATTATCGGATCGAAATGAACATTTTT--GCAAATTTGCCAAACCCGCATG-------------------ATAACTTACAGTTT------TGTGTCCTTGTCGGTGATATCTTGAACAGCACTAGTGATCATATCTTGAATACGAGAGTTTCGTCGTCT---GAAATTAAATAATCAAACTT----------CAAATTATTATAATAACTCACTTTTCTTCTAAAGCAACTTCTGCGTTCAGAAAATCGACTCTTTGCTCGTTGAGCTCTCGAATTTTGTTCAGAAAATGGATTCGATCGTTCTCAATGTCTTGTATTTGTTTTGTCAGCATTGTTACTGTGGTCTGGAAAT-----
s cb4.chrX              9742673 271 + 21540570 -----------------------------------------tttcaa---------------------------------------------aaagattt----------------------------------------------------cTTACAATTT------CAAATCAGTATCCGTGACTTCTTCCACTGCCTTTATTATCATTTCTTGCATTTTTGAGTGGCG-CTTCC---TAAAATAAGGATTCTAAATG----------GAAACAACTGAATC-ACTAACCTCTCTTCCATCGCTACCTCTGCGTTGAGCAAATCGATTCGTGTCTCGTTGAGCTGTCGAATTTTGTTAAGAAATTGGATTCTatcattttccatttcctGGATTTGTTTTGTGAGCGCAGTTACAGTACTCTAAAGTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1394779 287 -  4500979 --------------acgatt-------------ttttttgctttact---------------------------------------------ATTGACAA----------------------------------------------------CTCACAATTT------AAAATCTTTCTCCGTCACATCTTGTACCACATTAGTTATCATTTCCTGAACTCGCGAATGCCGTCTTCT---GAAAGTATTAAATCATGTTT----------AGAAGTTCTGTTTCTACCAACTGTTCTTCCTGTGCGACCTCTGCGTTCAGTAAATCAATTCTTGTCTCATTGAGTTCTCGaatcttattcaaaaaatgaatccgATCGTTTTCCATTTCCTGTATTTGTTTTGTTAGCATAGTTACCGTAGTCTGAAATT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   145951 269 +   386604 -----------------------------------------ttttca---------------------------------------------------------------------------------------------------------ctgacaattt------caaatctttatCTGATACATCGTTGATTGCACTGGTTATCATATCCTGAACCCGTGAGTGccttcttct---gaaacaaaatagtTTATTTAGTTTATGAGGCCAAG--TCGA----ACTAACTGTTCCTCGAGTGCCACCTCAGCGTTCATCATATCAATTCTTGTCGCGTTCAATTCTCtgattttgttcaaaaaatgaatccgatcgttttccatttcttgtATTTGTTGTGTCATCATTGTAACCGTTGCCTAAAATA-----
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2681440 292 +  4147112 ---------------------------------------CCTTTTCA---------------------------------------------AATataattattc--gaaaatttgaga-------------------------------accTTACAGTTT------CAAGTCTTTTTCCGTGACATTCTGAATAGCACTATTAATCATTTCTTGAACCCGAGACTGTCGTCGCctaaagaaaaaacatagtTTGGTCA----------TCAAG-TTTGA----ACCCACTGTTCCTGCAAATCCACCTCAGCATTCATGACATCAATGTGGGTTTCATTGAGCTCACGAATCTTGTTCAGGAAATGGATCCTATCACTTTCCATCTCTTGAATTTGTTTGTCCAACATGGTGACAGTTGCCTAAAAGT-----
i caePb3.Scfld02_0      I 4 I 20
s caeJap4.Scaffold18206   20785 353 +   129353 -----------GAAACATCTTGAACGGCGCTCAATATCTGTTCTTGAACTTTGAGACTTCTTCTCCTGAAAAGAAG----------------AATGGAATTAGtcatggaaatttttcaaaaaaaaatgtagcaaaaaaaacaaacgattgatttgaaatttgccgaaaaaattttcagcaggTATATAGTTT-TGGCATTATTAATCA--------------AAGT-------------GAAagataaaaataatattt---------------------------ttaccTTTCCTGAAGATCAACCTCTGCGTTCATACAATCTATTTTCTGCTCGTTCAGCTCTcgaattttgttcaaaaagttGATTCTATCGTTTTCCATGTCCAACTTTTGTTTTGTTAGCATGTTCACTGCGGCCtgaagcaaaatt
i caeJap4.Scaffold18206 C 0 C 0

a score=-8004.000000
s ce10.chrX             4461854 22 + 17718866 --CATAATACATTA-ATCTA--CATTC
s cb4.chrX              9742944 17 + 21540570 ------ACATCTGA--TTTA--Caggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1395066 13 -  4500979 ---------TATTA---TTA--CATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   146221 20 +   386604 ----TAAACTATGG---TCAATCAGTT
i caeSp111.Scaffold622  I 1 I 3
s caeJap4.Scaffold18206   21138 23 +   129353 aaaaatacagaTGAAATTCA--TAC--
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2681732 20 +  4147112 I

a score=125047.000000
s ce10.chrX             4461876 414 + 17718866  
s cb4.chrX              9742961 410 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1395079 425 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   146244 420 +   386604  
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2681752 447 +  4147112  
i caePb3.Scfld02_0      I 20 I 30
s caeJap4.Scaffold18206   21161 453 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=-6348.000000
s ce10.chrX             4462290 20 + 17718866 ATAAAAAAAATACAT--ACAAA
s cb4.chrX              9743371 19 + 21540570 ---aaaattgtgattcaaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1395504 17 -  4500979 ---AAGGTAGTAACT--GATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   146664 16 +   386604 ----aaagaataaat--gaaag
i caeSp111.Scaffold622  C 0 I 20
s caeJap4.Scaffold18206   21614  6 +   129353 -----tattat-----------
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2682199 30 +  4147112 I

a score=-4836.000000
s ce10.chrX             4462310 26 + 17718866 TTTGGA-------TTTCTGGATAATTATTATTT
s cb4.chrX              9743390 11 + 21540570 --------------tattaaaaaaa--------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1395521 15 -  4500979 --------------TTATGCAGAAAT----TTC
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold18206   21620 24 +   129353 tttgacaaagattttaatgaaaaa---------
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2682199 30 +  4147112 I
e caeSp111.Scaffold622   146680 20 +   386604 I

a score=-829.000000
s ce10.chrX             4462336 1 + 17718866 -T
s caePb3.Scfld02_0      2682229 1 +  4147112 -t
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18206   21644 1 +   129353 a-
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9743401 1 + 21540570 I
e caeSp111.Scaffold622   146680 20 +   386604 I
e caeRem4.Crem_Contig0  1395536 1 -  4500979 I

a score=36083.000000
s ce10.chrX             4462337 161 + 17718866 ACTTACAATTGTTATATAATGTTGCTGTCTGCTTATTTCTCTGTTTGACATCTTCTAACCTTTCAATAATTAATTTTCTATACGA---------GTCTGCCATCAACTCTGCa----aaaaaagtaaattgaaat----aaaacaaaataaag-taTTGAGCAA---TTTTTTGCGAAACAA
s cb4.chrX              9743402 135 + 21540570 actcacaattatCATAGAAAACCgcgattttcttatttttctgtttcacatcTTCCAACCGCTGTACAATCAACTTCCGATAGTC---------TTTTGACATGAAATCTGTa----aaagaaaaatctagaaa----------------------------------tttttgagcaacaa
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1395537 135 -  4500979 ACTTACAATTGTTGTAGATGGCTGCaatatgtttatttttttgtttcacttcTTCTAGTCGCTGAACTATCAGTTTTTTATAAGA---------TTCAACCATAAGATctgta----ataaaaaaaattggcta----------------------------------tTTTTTCACTGCaa
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   146700 123 +   386604 ACTTACAATTATTGTAAACCGAAGCGACTTGtttatttcttgttttaaCGTCTTCTAATCGTTCAATTATCAATTTCCTATAG------------TCGGACATAgacactgaa----aata--------ttaaG----------------------------------TTTTTA-GTTGCGA
i caeSp111.Scaffold622  I 20 C 0
s caePb3.Scfld02_0      2682230 132 +  4147112 acttACAATTATTGATAAAAGTGGCAGTTTGTCTATTGGCTTGTTTCACTTCTTCCAATCGTTGCACTATTAATTGTTTATAA------------TCGGACAtagaacctgga----aaaatatcttctttgat----------------------------------tttttctgttgcga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   21645 182 +   129353 acttacaattactataaaatattgaaatcTGTTTATTCTTTTGCGCAACATCCTTGAGTCGGTCGATAATTAATTTTCTATACGAATCGCCTGGTTCACTCATCGAGTCTGTACGTCAAGAAGATTTTTCTGatgaataaaagaaaaataacgttATTTAAAGATTCTTTATTATGAAACAA
i caeJap4.Scaffold18206 C 0 I 3915

a score=10852.000000
s ce10.chrX             4462498  82 + 17718866 AAGTGGATA-AA-----AATAACCCAA------------GCAACACAACT----------CGGGTGAACACAGCGTGACCAGTTTACTACGTTG-TCAATAGAGCGCGTTT
s cb4.chrX              9743537  94 + 21540570 aatattactgaa-----aaaatgtggaaaaacaag----gtaaaattagc-------aattaaataaacaaaacGTGACTTGTTATTGAGGttg-tcaatggagcgcgttt
i cb4.chrX              C 0 I 5452
s caeRem4.Crem_Contig0  1395672 100 -  4500979 aattttatt-at-----gaaatttttgctgaTAAG----TGAAAACTAGCAAAATATAAGTGAGTGAACAAAACGTGACCAGTTATATcacatt-tcggtagagcgcattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   146823  86 +   386604 AATTTAATG-CA-----AAAACATCGGTAAAC-------GTAAAATTACC-----------GGGTAAAAACATTGTGACTAGTTATCTCAATTG-TCagtggagcgcgttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2682362  98 +  4147112 aatcaaatg-aaaattgaaaaaataaacaagtgAATACAGCAAAATTACT-----------GGCT-ATAACAGCGTGACTAGTTATCTTGattgttcaatagagcgcactc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   21827 3915 +   129353 I

a score=1353.000000
s ce10.chrX             4462580 3 + 17718866 GCA
s caeRem4.Crem_Contig0  1395772 3 -  4500979 aca
i caeRem4.Crem_Contig0  C 0 I 6983
s caeSp111.Scaffold622   146909 3 +   386604 gca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2682460 3 +  4147112 gca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I

a score=493.000000
s ce10.chrX             4462583 12 + 17718866 TTTTTTAATTTT
s caeSp111.Scaffold622   146912 12 +   386604 ttaTTCTCTCAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2682463 12 +  4147112 ttatttctttct
i caePb3.Scfld02_0      C 0 I 12256
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=519.000000
s ce10.chrX             4462595 21 + 17718866 CGTAGCGTCTTTGAAGGGGGA
s caeSp111.Scaffold622   146924 17 +   386604 C----CGTCTCAAAAGGGAGA
i caeSp111.Scaffold622  C 0 I 7295
e caePb3.Scfld02_0      2682475 12256 +  4147112 I
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=0.000000
s ce10.chrX             4462616 794 + 17718866  
e caePb3.Scfld02_0      2682475 12256 +  4147112 I
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   146941 7295 +   386604 I
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=458.000000
s ce10.chrX             4463410 15 + 17718866 AACAATCATAACTTT
s caePb3.Scfld02_0      2694731 15 +  4147112 AACAATTTCAGTATT
i caePb3.Scfld02_0      I 12256 C 0
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   146941 7295 +   386604 I
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=1192.000000
s ce10.chrX             4463425 15 + 17718866 AACTTCAAATC-AAGA
s caeSp111.Scaffold622   154236 16 +   386604 AACtggaaatcagaga
i caeSp111.Scaffold622  I 7295 C 0
s caePb3.Scfld02_0      2694746 15 +  4147112 GGCTTGAAATC-TAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   21827 3915 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=432.000000
s ce10.chrX             4463440 7 + 17718866 AAATATC
s caeJap4.Scaffold18206   25742 7 +   129353 aaaaatc
i caeJap4.Scaffold18206 I 3915 C 0
e caePb3.Scfld02_0      2694761 0 +  4147112 C
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   154252 0 +   386604 C
e caeRem4.Crem_Contig0  1395775 6983 -  4500979 I

a score=48758.000000
s ce10.chrX             4463447 195 + 17718866 -----AAAAAGACACCTACA-ATGCAAACATG---------TGCCTCATG---AGCTGTACATACAAACAT--GCGTGTAACGTATTCTGAGCGCGTCGGT---------ATTCTGCATATTTCTTCTCCTCTTCCTCAA-CCCGAGGGTTTTGTCGTCTCATTGGCAACATTGC-TTTAATGTGATTTGTTTTTTC--TTTTCCA------TCTTC------CTTCCCATCAAAAAGCG
s caeRem4.Crem_Contig0  1402758 198 -  4500979 -----aaaagtacACTGACA-ATGCAAACATTCAGATGTC-TTTTTCTTG---AGCTGTATGT--AAACAC--TCTTGTAACGAATTCTGAGCGTGTCTG------------TCTGCATGTTTC-----CTCTT-CTCAA-ACCCAGGTTTTC----TCTCGTTGGCAACATTGCTTTTAATGTGATTTgctttt----tatttcattcgtTTCGTCTTCCTCCTTCTCATC-CATTGTG
i caeRem4.Crem_Contig0  I 6983 C 0
s caeSp111.Scaffold622   154252 184 +   386604 -----aaaagtacACTGACA-ATGCAAACATTCAGATG---TGCTTCATG---AGCTGTACGT--AAACAC--AAATGTAACGAATTCT----------G------------TCTGCATGTTTCG----CTCTT-CTCAACCCCcaggttttt----tctcattcgaaACATTGCTTTTAATGTGATTtgcctctct--tttttcatgcgtttcttct-----ctt-tcatc-aCAAGTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2694761 198 +  4147112 -----AAGAGTACACTGACA-ATGCAAACATTCACACATCTTGCCTTACG---AGCTGTACGT--AAACAC--GAATGTAACGAATTCTGAGCGTGTTGG------------ACTGCATGTTTCG----CTTTT-CTCAA-ACccagattttt----tctcattcgaaACATTGCTTTTAATGTGATTTGCCCCTCTA-CATTTCATTCGGTTCTCCT-----CTTCTCATC-AATAGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   25749 197 +   129353 aaagaaaccAGACCTTGACACATGCAAACAT----------TGCTTGAAATGTAGAAGTACGT--AAACACATGCACGTAACAAATTCTGAGTAGGCTGGCTGCGATGGAAATCTTCAGGTTTTTTCTCCTCTTGCTGCA-----------------TTTCAT--------TTCCTGTTAATGTGATTTGTTTCTGCACGCCTCCATTCTCATTTTG------GTCCTCATCAATAAGTG
i caeJap4.Scaffold18206 C 0 I 1126
e cb4.chrX              9743631 5452 + 21540570 I

a score=15224.000000
s ce10.chrX             4463642 108 + 17718866 TGTCACCT-ATGAGTTCATCTGCC------CACGTTCTAGTTTATCACTACC--GTTGATTTCACTGGTTTATAAATTTATAACTAGCTCCAATGCAAGTTTTGATTAGCTAAAATT
s caeRem4.Crem_Contig0  1402956 106 -  4500979 CCTCAACTTTTAGGTTCACTCGACACTTGTCACTTTCTATTTTATCACTACCACATGGATTTTACT--------AGTTTATGATTAGCTCCAA--CTTGCT-TAATCAGCTGACATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   154436 101 +   386604 TCACAACT-ATGAGTTCATTCAACATCTGTCACACTCTATTTTATCACT-----ATAGATTTTACA--------AAGTACAAATTAGCTCAAT--GATATTATAATCAGCTGACATT
i caeSp111.Scaffold622  C 0 I 314
s caePb3.Scfld02_0      2694959  99 +  4147112 TGACAAAC--TGAGTTCACAAAACATCAGCCACTTTCTCTTTTATCACT-----TTTG-TCTTACT--------AGTTTCTAATTAGCTCCAT--CATTCAATAATCAGCTGACATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I

a score=-380.000000
s ce10.chrX             4463750 24 + 17718866 --TAGGTAGTACATCTTTTTTTCTTT-
s caeRem4.Crem_Contig0  1403062 27 -  4500979 AGAATGGTGTGTGGACTCTTTTTCAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2695058 26 +  4147112 AAAGCGCTGTTTATACCTTTTTCCTT-
i caePb3.Scfld02_0      C 0 I 290
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   154537 314 +   386604 I

a score=217.000000
s ce10.chrX             4463774 6 + 17718866 TCTAGA
s caeRem4.Crem_Contig0  1403089 6 -  4500979 TGCAGA
i caeRem4.Crem_Contig0  C 0 I 1725
e caePb3.Scfld02_0      2695084 290 +  4147112 I
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   154537 314 +   386604 I

a score=0.000000
s ce10.chrX             4463780 607 + 17718866  
e caePb3.Scfld02_0      2695084 290 +  4147112 I
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9743631 5452 + 21540570 I
e caeSp111.Scaffold622   154537 314 +   386604 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=286.000000
s ce10.chrX             4464387 12 + 17718866 GTACTCACAAGG
s cb4.chrX              9749083 12 + 21540570 GTATTAATAGAA
i cb4.chrX              I 5452 C 0
e caePb3.Scfld02_0      2695084 290 +  4147112 I
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e caeSp111.Scaffold622   154537 314 +   386604 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=-1380.000000
s ce10.chrX             4464399 44 + 17718866 CTCTCAAAAATTTT----CTTTTTAATTAGGAGTTTACATGAATAATA
s cb4.chrX              9749095 39 + 21540570 -GCCGCAAAGCTTTCTTggtttatttttccaaacctAGAA--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2695374 37 +  4147112 CTCTGAAATGTTAT----GTTTATCATTAAAAACTGACTTA-------
i caePb3.Scfld02_0      I 290 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e caeSp111.Scaffold622   154537 314 +   386604 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=36161.000000
s ce10.chrX             4464443 169 + 17718866 ----TTTTGTGT--ACTGCTCTCAATTGACCATATGCCTGCCAGCTCTAAACAGATC------------TCAGTTCGTTTC--TCCTTTTCTATGCCAAACTTTGGCCAATTGAGCAAACGACATCTGGTTTCTGTTTA-TTCTTAATCAGA--GTCCTTTCTTTCTTTCTTTTCATCTCATTTTAAACTTT
s cb4.chrX              9749134 158 + 21540570 TTAGTTGTGTGTTGATCGTTCAAC----TCCACA----TGTCAATTTTAAACAGATC---------CCTTC---CCGTTGCAGTCCTTTTCCATACCAAACTTTGGCCAA--------TTCACATCTGGTTTATGTTTATTTCTGAATCAGATTGGCCGTTTCTTC------TCAATCtcattttaaacttt
i cb4.chrX              C 0 I 450
s caeSp111.Scaffold622   154851 161 +   386604 ----TTGTGTGT--ATTGCTCATCGCTGTCCACA----TGGCAGTTTTAAACAGATCTTCAACCAGCTTCCagtctttttc--tccttttccatA-CAAACTTTGGCCGATCT---TTTTGACATCTGGTTTCTGTTTA-TTCTTAATCAGA--------Cccttc------ttcatctcattttaAACTCT
i caeSp111.Scaffold622  I 314 C 0
s caePb3.Scfld02_0      2695411 151 +  4147112 -----TTCGTGT--ATTGCTCAACATCGTCCACA----TGTCAGTTCTAAACAGATC---------CGTGCAgtccttttc--tccttttccatg-CAAACTTTAGCCAATTG---CCTTCACATCTGGTTTATGTTTA-TACTCAATCAGA--------CCcttc------ttcatctcattttAAACTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=472.000000
s ce10.chrX             4464612 18 + 17718866 CACAAGTTCCAAATTCCA
s caeSp111.Scaffold622   155012 10 +   386604 C---AGCTCTAAA-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2695562 15 +  4147112 C---AGCTCTAAACTTCA
i caePb3.Scfld02_0      C 0 I 949
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9749292 450 + 21540570 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=990.000000
s ce10.chrX             4464630 18 + 17718866 CTTTCGATTACGCTGTCA
s caeSp111.Scaffold622   155022 18 +   386604 CTTTCAATCACGCAACCA
i caeSp111.Scaffold622  C 0 I 295
e caePb3.Scfld02_0      2695577 949 +  4147112 I
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9749292 450 + 21540570 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=0.000000
s ce10.chrX             4464648 1447 + 17718866  
e caePb3.Scfld02_0      2695577  949 +  4147112 I
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9749292  450 + 21540570 I
e caeSp111.Scaffold622   155040  295 +   386604 I
e caeRem4.Crem_Contig0  1403095 1725 -  4500979 I

a score=273.000000
s ce10.chrX             4466095 1 + 17718866 A
s caeRem4.Crem_Contig0  1404820 1 -  4500979 a
i caeRem4.Crem_Contig0  I 1725 C 0
s caePb3.Scfld02_0      2696526 1 +  4147112 a
i caePb3.Scfld02_0      I 949 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9749292 450 + 21540570 I
e caeSp111.Scaffold622   155040 295 +   386604 I

a score=945.000000
s ce10.chrX             4466096 9 + 17718866 AAAAATTTC-
s caeRem4.Crem_Contig0  1404821 9 -  4500979 -aaaaacatg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   155335 9 +   386604 aaaaaacac-
i caeSp111.Scaffold622  I 295 C 0
s caePb3.Scfld02_0      2696527 9 +  4147112 aaaaaattc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I
e cb4.chrX              9749292 450 + 21540570 I

a score=12512.000000
s ce10.chrX             4466105 78 + 17718866 ---------AAAAAAC--CAAAAAAAAATTAAATTGTTCCAATC------CAACGTCAGTAGCGCAAAATACGCGCCCTTACAATTGAATCTTAG
s cb4.chrX              9749742 88 + 21540570 aagaaaccaaaaaagtcccaa----aaattagatt--ttcagtCTTACAACAACGTCAAAGAAACGAGAAGAGGGCTCTTAAAATTGAATCTT-G
i cb4.chrX              I 450 C 0
s caeRem4.Crem_Contig0  1404830 75 -  4500979 agaaaaacacataaat--caa----aaatttgatt-------tctt---ccaACGTCAACGG---GAAAGAAGGGCCCTTACAATTGAATCTT-C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   155344 64 +   386604 ---------aacaaat--caa----aaattaaatg-------tc-----TAAACGTGAGTAA---AGAAGAAGGACCCTTAAAATTGAATCTG-G
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2696536 51 +  4147112 ---------caaaaac--caa-----------------------------aaacgtcagtga---aaaaaaaggaccCTTACAATTGAATCTT-G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   25946 1126 +   129353 I

a score=15296.000000
s ce10.chrX             4466183 473 + 17718866  
s cb4.chrX              9749830 605 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1404905 600 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   155408 556 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2696587 603 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   27072 467 +   129353  
i caeJap4.Scaffold18206 I 1126 I 1525

a score=6309.000000
s ce10.chrX             4466656 430 + 17718866  
s cb4.chrX              9750435 515 + 21540570  
i cb4.chrX              C 0 I 307
s caeRem4.Crem_Contig0  1405505 423 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   155964 414 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2697190 417 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   27539 1525 +   129353 I

a score=190.000000
s ce10.chrX             4467086 30 + 17718866 TTTTTCTGGCACGTAAATTGACAACAATTT
s caeRem4.Crem_Contig0  1405928 13 -  4500979 -----------------TTGATCACATTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156378 19 +   386604 -----------CGTAAGTTTTCTAtagttt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2697607  0 +  4147112 C
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I

a score=-125.000000
s ce10.chrX             4467116 37 + 17718866 TCGCTCACTAATTGGGGTTTTTAAGGTTTTAATCATT
s caeSp111.Scaffold622   156397 14 +   386604 ---ctc--------------------tttcattcatt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2697607  0 +  4147112 C
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I
e caeRem4.Crem_Contig0  1405941  0 -  4500979 C

a score=-5.000000
s ce10.chrX             4467153 57 + 17718866 AAATACCTgctccattgaacgacgaaatgtctgtaaaaaatatttgaattcgcaacg
s caePb3.Scfld02_0      2697607 28 +  4147112 AAATACT-----------------------------ACAATGTCTCAGTTCTCATCG
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I
e caeSp111.Scaffold622   156411  0 +   386604 C
e caeRem4.Crem_Contig0  1405941  0 -  4500979 C

a score=0.000000
s ce10.chrX             4467210 100 + 17718866 agaattCGGGTTGCGCAATCAAATATATTAGACATAGAAAACAAATTAAAATGTAAACAGTAAAAATGAAAGAATTGCTCGGGAAGTTACCTGAATAAAC
e caePb3.Scfld02_0      2697635   7 +  4147112 I
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I
e caeSp111.Scaffold622   156411   0 +   386604 C
e caeRem4.Crem_Contig0  1405941   0 -  4500979 C

a score=509.000000
s ce10.chrX             4467310 10 + 17718866 CATAAATATT
s caeRem4.Crem_Contig0  1405941 10 -  4500979 CATACATCTT
i caeRem4.Crem_Contig0  C 0 I 7
e caePb3.Scfld02_0      2697635  7 +  4147112 I
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I
e caeSp111.Scaffold622   156411  0 +   386604 C

a score=0.000000
s ce10.chrX             4467320 37 + 17718866 TAAGCATTAGAATAAACTAATACACCTTAAAATAATA
e caePb3.Scfld02_0      2697635  7 +  4147112 I
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9750950 307 + 21540570 I
e caeSp111.Scaffold622   156411  0 +   386604 C
e caeRem4.Crem_Contig0  1405951  7 -  4500979 I

a score=-2566.000000
s ce10.chrX             4467357 16 + 17718866 TCAACAAAAAATTAGC
s cb4.chrX              9751257 16 + 21540570 TCACCAAGTAATCAAC
i cb4.chrX              I 307 I 99
s caeRem4.Crem_Contig0  1405958  2 -  4500979 TT--------------
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0      2697642  7 +  4147112 -----AAATTAC----
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e caeSp111.Scaffold622   156411  0 +   386604 C

a score=-554.000000
s ce10.chrX             4467373 19 + 17718866 AAAAAGCATTGTTAATTTA
s caeSp111.Scaffold622   156411  6 +   386604 -----------tcaact--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2697649 19 +  4147112 AAAATATTCTCTAAATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   27539 1525 +   129353 I
e cb4.chrX              9751273 99 + 21540570 I
e caeRem4.Crem_Contig0  1405960  0 -  4500979 C

a score=22786.000000
s ce10.chrX             4467392 83 + 17718866 TCAATTATTTTTTTCAGAGATCGCGCTTTTCTAAACCCAATACTCACACTCATTTTTGTTTTTGTCGGGCTTGTGGGTCTCAT
s caeRem4.Crem_Contig0  1405960 73 -  4500979 ----------TTTTCAGAGAGCCAATATATCTCAAACCGATTTTGTCgctcatttttttatttgtcgGTCTTGTGGGACTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156417 73 +   386604 ----------GTTTAAGTGAGCCAGCATTCTTGAAACCCACCCTCACAAgtattttcttgtttgtcGGCCTTATCGGACTTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2697668 73 +  4147112 ----------GCTTTAGAGaaccatcatttttgaaaccgactttgacatctctttttctctttgtcgGTGCAGTTGGGCTCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   29064 82 +   129353 TCGATTTTT-CTTAAAGAGAGCAAAAGTATCTAAAGCCCATATTCACGCTGATCTTCCTGTTTGTGGGACTTGTCGGATTAAT
i caeJap4.Scaffold18206 I 1525 C 0
e cb4.chrX              9751273 99 + 21540570 I

a score=13380.000000
s ce10.chrX             4467475 40 + 17718866 TGGCAATTTGCTCACAGTTATTGTGATTTTCAAGGTA---AG-G
s cb4.chrX              9751372 35 + 21540570 ----tagCGATTGACTTCTATTAGAATTTTCACGGTA---GA--
i cb4.chrX              I 99 C 0
s caeRem4.Crem_Contig0  1406033 42 -  4500979 CGGAAACTTGCTGACAGTCATTGTTATTTATAAGGTATAGTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156490 40 +   386604 TGGAAACCTATTGACTGTTATTGTCATTTTCAAGGTG---aga-
i caeSp111.Scaffold622  C 0 I 36
s caePb3.Scfld02_0      2697741 40 +  4147112 TGGAAACTTGTTGACCGTGATCGTTATTTTCAAGGTA---ATT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   29146 37 +   129353 TGGCAACCTTCTTACGGTCATTGTCATCTTTAAGGTA-------
i caeJap4.Scaffold18206 C 0 C 0

a score=-11075.000000
s ce10.chrX             4467515 33 + 17718866 TGGTAG--------ATTTGT-------AAACAATAAAGTGTGAAAATA
s cb4.chrX              9751407 21 + 21540570 TCCCAA----------Ttgcttttttctatt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406075 32 -  4500979 TCTTAA--------ATTTCCTGTTTTAAACCAAACAAAAG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2697781 38 +  4147112 --TCAG--------ATATATTTTTCACAATCAATTATATATTTCAATT
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18206   29183 40 +   129353 -CACAATTGAAACAACCAGctttcacgaaaaaaacaaattt-------
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   156530 36 +   386604 I

a score=144550.000000
s ce10.chrX             4467548 158 + 17718866 TTCAGACAAATTCCCTGCACTCGCACACAAACTATTTCTTGGCAAATCTTGCTACCAGCGACTTCTGTCTCATCGTTGTTGGAGTTTCGTTTGACTTGGTGAATATCTGGAACGATGAGGAACCGCTGGACATTTTTGGATATTGCTCTCTTACAAGT
s cb4.chrX              9751428 158 + 21540570 ttcagaccaaagCCCTTCACTCACATACCAACTATTTTCTGGCCAATCTGGCCACCAGTGACTTCTGTCTTATTATCGTTGGCGTAACATTCGACTTGGTCAACATCTGGAATGATGGTCAGCCTCCTGAGCTGTTTGGATACTGCTCTTTTACCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406107 158 -  4500979 TTTAGACAAAATCTCTACACTCTCACACTAACTATTTTCTTGCCAATCTTGCCACTAGCGATTTTTGTCTCATTGTTGTTGGCGTATCATTTGATTTGGTCAACATTTGGAACAAAGGAGAGCCTCTGGAGGTGTTCGGATACTGTTCTCTGAccagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156566 156 +   386604 ttcagaCCAAAGCTCTACATTCTCatacaaattattttcttgcTAATCTGGCAACCAGTGACTTCTGTCTGATTATTGTTGGCGTCTCATTTGATTTGGTCAACATCTGGAACAAAGGAGAACCTCTTGAACTTTTCGGATACTGCTCTCTCACCA--
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2697823 158 +  4147112 TTTAGACCAAAGCTCTGCACTCTCACACCAACTACTTTCTAGCCAATCTGGCTACCAGTGACTTTTGCCTGATTGTTGTTGGCGTCTCATTTGACTTGGTCAACATTTGGAACGACGGACAGCCTCTCGAATTGTTCGGATATTGCTCTCTCACCAGT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18206   29223 158 +   129353 tccagACAAAATCACTCCATTCTCACACAAACTACTTCCTGGCAAATCTGGCAACCAGCGACTTCTTCCTTATTGTCATTGGCGTCTCATTCGACTTGGTCAACATCTGGAACGATGAGCAACCACTTGAATTGTTTGGTTACTGCTCTCTGACAAGT
i caeJap4.Scaffold18206 C 0 I 45

a score=-5162.000000
s ce10.chrX             4467706 27 + 17718866 GAG---------CAAATTCCAAAATCCTAGGCAAAC
s cb4.chrX              9751586 27 + 21540570 AAG--------AAGTATTTCCAATGTACTT-TCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406265 33 -  4500979 aagaaaaaaaaaagaatt---aatgTGTTTATCAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2697981 31 +  4147112 ATA-----AGCAgctatttcagaattttatccTAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   29381 45 +   129353 I
e caeSp111.Scaffold622   156722  0 +   386604 C

a score=159606.000000
s ce10.chrX             4467733 207 + 17718866 -TAAATGTTTT--GTTCCAGGCACTTTTATATCTCTGTTCACATTTGCTTCAATTCTCACAATTGTTCTTTTGACGGCAGAAAGATTTACAGCGATTTGTTATCCTTTTTCCCATAGAACAATTTTCGACGAGAAGCGTGTTAAAAGGTTTATACTGCTTATTTGGTTCGTAGCACTTCTTCCATCAATTTTCATTGGCTCTATGGTAAG
s cb4.chrX              9751613 206 + 21540570 -TACAAACTT---TTTCCAGGCACATTGATATCTCTTTTCACATTTGCTTCAATTCTCACAATTGTTCTGCTGACGGCAGAAAGGTTCACAGCAATCTGTTATCCATTTTCACATAGAACAATATTTGACGAAAAACGGGTGAAACGATTTATTCTATTGATTTGGTTTGTTGCACTGCTCCCCTCGATTTTCATTGGATCAATGGTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406298 205 -  4500979 -----AGCTTGCGTTTGCAGGCACCTTCATATCTCTCTTCACATTTGCCTCAATCCTTACTATTGTTCTGCTGACAGCAGAAAGGTTTACTGCAATATGTTATCCATTCTCGCATAGAACAATTTTTGACGAGAAACGTGTCAAGAGAttcattttattgatttggtTTGTTGCTCTACTCCCATCAATCTTCATTGGATCAATGGTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156722 188 +   386604 --------------------GcactttcatttctctcttcacaTTCGCTTCAATTCTTACTATTGTCATGTTGACCGCTGAAAGATTCACTGCAATCTGTTATCCATTCTCTCATCGaactatttttgatgagaaacGTGTCAAGCGTTTCATACTGTTGATTTGGTTTGTGGCACTCCTCCCGTCAATTTTCATTGGCTCCAtggta--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2698012 204 +  4147112 -CATGTAC-----TTTACAGGTACTCTCATTTCCCTTTTCACATTCGCGTCGATTTTGACAATTGTCATGTTGACAGCTGAGAGATTCACAGCAATTTGTTATCCTTTTTCTCATCGGACcatttttgacgaaaagcGTGTGAAGAGattcattttgttgatttgGATTGTTGCTTTGATCCCGTCAATTACCATCGGATCAATGGTAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   29426 207 +   129353 taacgttttt---tttttaggtacTTTGATTTCCCTATTCACGTTTGCCTCAATTTTGACGATTGTTCTTCTGACAGCTGAAAGATTTCAAGCAATATGTTATCCATTTTCTCATCGAGCTATTTTTGATGAGAAGCAAGTGAAAATATTTATTCTGGTGATATGGATTGTTGCATTGGTCCCATCTATATACATTGGATTTATGGTAAA
i caeJap4.Scaffold18206 I 45 I 19

a score=-6716.000000
s ce10.chrX             4467940 31 + 17718866 ATTTTT--TTCTTCAAAACTTTATTAGTTT--TTT
s cb4.chrX              9751819 18 + 21540570 --------AGCTAtggaa---aatca------ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406503 29 -  4500979 ACCAGTGTAGCTTAGGAATACAATTA------CGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156910 27 +   386604 --------attttaaaaacatgtTCAGATACCTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2698216 28 +  4147112 -GCATTGTATTTaaagattttcttca------ttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   29633 19 +   129353 I

a score=76224.000000
s ce10.chrX             4467971 262 + 17718866 AAAATTAATTGAATGCAAAAT----TCAACAATTTTCAGTTCAAACGAGTGTCTCAAGACTTTTGTGGCTTCAATCGCCAAATGACTTATATCGGTCGATGTGATTTGGTGACATCTCCAGATAGTTTCTTCCGGTACCCATTTGAAT------------------------------------------------------CAGCAATAACCATCACTTTTGTACTTCCCTTGTTCTTCATTATTTATTGTTACTTCCGGATTCTAGGTACGCGA---------------------------------------------------------------------------------------------------------------CATTTTCTTTGTATTACA------------GTAAATTTAAGCTACACGAGT-------------------------AATAT---
s cb4.chrX              9751837 236 + 21540570 gaaact--ttgaa--------------aaaatgttacaGTTCAAGCGCGTTTGGCCTGATTTCTGTGGTTTTAATCGTGAAATGAACTATGTAGGACGATGTGACTTGCTGACTTCCCCAGACAGTCTTTTCCGGTATCCATTCGAAT------------------------------------------------------CAGCCATGGCAATCACGTTTGTTCTTCCGCTATTCTTCATCATCTACTGCTATTTTCGGATTCTCGGTCAGTA-----------------------------------------------------------------------------------------------------------------ACTATCTTAGAAACC------------------GATCTATCTTTCGG-------------------------------TA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1406532 220 -  4500979 GA-------------------------------TTTCAGTTCAAACGTGTTGGTCTCGATTTCTGTGGATTCAAACGTCAGATGAACTATGTTGGACAATGTGATTTGATCACTTCTCCCGATAGTTTCTTCCGTTATCCATTCGAAT------------------------------------------------------CTGCAATGGCTATTACGTTTGTTCTCCCGCTCTTTTTTATCATCTACTGctatttcagaattctaggTAAGTAA---------------------------------------------------------------------------------------------------------------TATTAGATTAGAA------------------------TTGTCCTGTGAGTT----------------------------TA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   156937 225 +   386604 AAagct--ttt--------------------tatttcagttcaaaCGCGTAGCTCCTGATTTTTGTGGCTACAACCGTCAAATGAGATATGTTGGTCAATGCGATTTGGTGACTTCCCCTGACAGTTTTTTCCGCTACCCATTCGAAT------------------------------------------------------CTGCTATCACTATAACATTTGTTCTTCCCTTGTTCTTCATTATCTATTGCTACTTCCGTATTCTCggttt--------------------------------------------------------------------------------------------------------------------gtcatttttcaatcat----------------tgcTTCATCCG-----------------------------------AA---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2698244 229 +  4147112 aaagtt--gtc-------------------atttttcagttcaagcGAGTCGCTCCGGATTTTTGTGGATACAATCGCCAAATGAATTATGTCGGTCAATGTGATTTGGTCACTTCTCCAGATAGTTTCTTCCGTTATCCCTTTGAAT------------------------------------------------------CTGCTATCACCATCACATTTGTTATCCCgcttttcttcatcatttacTGCTATTTCCGCATTCTCGGT-----------------------------------------------------------------------------------------------------------------------GCGTTTCAGAATCA------------------GTTTCAGCAATAAAATT---------------------------CAC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   29652 459 +   129353 -----------aaaaaaaaacaaaaacaaaaggttTCAGTTTAAACGTGTGGCGCAAGATTTTTGTGGATTCAATCGTCCGATGAGTTACGTGGGGAAATGCGATTTGACCACTTCGCCAGATAGTTTCTTTCGATATCCATTTGAGGTTTACTTCATTCATATAATTTGAACAAaagaaataattaaaaaaatccttCAGACTGTTATGGCAATTACTTTCGTGCTCCCActgtttttcataatttattgCTACTTTCGCATTTTAGGTATGTAAATATTTTGTATTATTGTTTAATGTTTTGTCAGTTAttctgtaaattcgctccattcgcagtggacgaggcggccacgttgccgacgagagagttcacatgagcgcgcttttttttctctctgaatctcactctaaATGCATGTGCAGTTCA-CTGTACGATTGGAGAGAATTCATAGCGCAATACCGAGCAATAC
i caeJap4.Scaffold18206 I 19 I 113

a score=364058.000000
s ce10.chrX             4468233 566 + 17718866  
s cb4.chrX              9752073 573 + 21540570  
i cb4.chrX              C 0 I 1779
s caeRem4.Crem_Contig0  1406752 571 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   157162 563 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2698473 560 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   30224 580 +   129353  
i caeJap4.Scaffold18206 I 113 C 0

a score=69.000000
s ce10.chrX             4468799 6 + 17718866 ATTGAA
s caeRem4.Crem_Contig0  1407323 6 -  4500979 AGTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   157725 6 +   386604 TAATAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699033 6 +  4147112 aatgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   30804 6 +   129353 GAGGAA
i caeJap4.Scaffold18206 C 0 I 1582
e cb4.chrX              9752646 1779 + 21540570 I

a score=546.000000
s ce10.chrX             4468805 1 + 17718866 A
s caeRem4.Crem_Contig0  1407329 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 135
s caeSp111.Scaffold622   157731 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699039 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   30810 1582 +   129353 I
e cb4.chrX              9752646 1779 + 21540570 I

a score=-9671.000000
s ce10.chrX             4468806 220 + 17718866 AAAATTATATTTGCTACCCATAAATGTATTGCTTAAATGCC-------GACAAATAAACGACCCGCTTGCTTGATTCACAGCAACGTTAACTTGTAATAAAACTACTACATTATTCCACATTCCATCATTTAATGTAATTCATGTTAAACAATATAAGTAATAAACATCATAAAGTGCCATAGTTACCATGTTACTATTGTTCAAAACAAGACG-----CTGAA--AT--GACAGA
s caeSp111.Scaffold622   157732 134 +   386604 -----CACACTTGCTTC----ACATGCCctgtcaaaatttt-------ttcgaa---------actttgcTTA------------------TTCGAAT-------------------ATTTGCCtgtatttatttcaaatcc---------------------AACATT-----------------ccattcattgtttttctatg--aaGACGTCCAACTGCACTATTTGTCAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699040 157 +  4147112 -----tatgacTGATGT----TAAATCGCtcctataattttcattttctataaa---------cttcTGCTTACTGC-------------TTTgtaaa-------------------attcttctttttttgtatctattCTGTCTAATTATTGAAAG---CAAACATT-----------------CCATGTGCTTATTGGCTTTA--TATTTG-----CTgta--attcggaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   30810 1582 +   129353 I
e cb4.chrX              9752646 1779 + 21540570 I
e caeRem4.Crem_Contig0  1407330 135 -  4500979 I

a score=260.000000
s ce10.chrX             4469026 14 + 17718866 TAAAACAAAATCaa
s caeRem4.Crem_Contig0  1407465 14 -  4500979 taaactgaaaccaa
i caeRem4.Crem_Contig0  I 135 C 0
s caeSp111.Scaffold622   157866 12 +   386604 CCCCTTGAAAtc--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699197 14 +  4147112 aaaaaccaaaccaa
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold18206   30810 1582 +   129353 I
e cb4.chrX              9752646 1779 + 21540570 I

a score=-6488.000000
s ce10.chrX             4469040 98 + 17718866 aaattaatttttaaaaaatagaatttaaatCGGGGGTATTCTAGTTACTGGCTATTTTATTGTTAGTTAAAAATTTTTTGGGTTGAAATTTGATGTAG
s caeRem4.Crem_Contig0  1407479 48 -  4500979 ------------aacataaaaa---caaat------GATTATAATAACTTA---------------------------TACGTTCaagttt--tgtag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   157878 23 +   386604 ---------ttcaac-------------at------ttttctgacatctga-----------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2699211 67 +  4147112 I
e caeJap4.Scaffold18206   30810 1582 +   129353 I
e cb4.chrX              9752646 1779 + 21540570 I

a score=-29140.000000
s ce10.chrX             4469138 294 + 17718866 AAAAATGAGAAAAACAATAATTTCTATGTTATTTCTCAATTGTTCttttaaaaatagttaagtttaatcaaaaaatatatatttacatttctattttttattCACCTTTATTTATAACTGTTTGGAAACCGCAAAAAAATTGTACCAAAATT-TGCAGTTTTATAGGTCCAGTCTTTTATTCACATTAGATGCTAACAACTTACTGGATAATTTACTATTGACATTAAAATCGAGACGTATTCCATTAAACAAAACAAACTCAACCTTGTCTCACCTCTTTCCCAATCCACCACT
s caeRem4.Crem_Contig0  1407527 127 -  4500979 ------------aaaaattgTCACTATG----------GTC-TCCAGCTACAAC----------------------------CAACACACATATTTCCCATCAGA---AAATCATGA-----------ATTCgtagaaaaatcaacaaaaat-tgttggttca-------------------------------------------------------------------------------------------attctctgaatct---------cttttctcatcttattt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   157901 137 +   386604 -----------ataaa------------------------cattttgtaaaaac----------------------------ttacattttTATCTTATATTTGG--------Gtgattc--------attaaaaaagtgTGAATTAACTCT-TGTCAAAACA---GTCCA----------------------------------------------------------------ACGCAGt-------ataaaatactttttctgttattt---cttctcgtctctctgtttc-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699278 157 +  4147112 CCAAATGATGAATAAAGTTATTCTTGTG----------atcattttgcaaaaaa----------------------------tcttAATCAATGCTCAAAATTGGAGGAAATAGTGACTCT-------GCTCACAAAACATTTATCGGTTCTCCGTTGAAATA----TACA----------------------------------------------------------------ACg----------------acactctctctct---------tttccgtCAATCTATCGCT
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold18206   30810 1582 +   129353 I
e cb4.chrX              9752646 1779 + 21540570 I

a score=14897.000000
s ce10.chrX             4469432 40 + 17718866 CTTGTTATCTCTGCGTCTC-TTTTCTAAACGACACTCCGC-T
s cb4.chrX              9754425 41 + 21540570 CTTgtgttgtctgcgtctcgtttTCGCAACGATACTCCGC-G
i cb4.chrX              I 1779 C 0
s caeRem4.Crem_Contig0  1407654 41 -  4500979 gtttttctgtctgcgtctc-ttttcacaacgacactccgctg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   158038 33 +   386604 ---------tctccgtctcttttttGCAACGACACTCCGGTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699435 41 +  4147112 ATTATCGAGTCTGCGTATCTTTTGCGCAACGACGCTCCGa-g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   30810 1582 +   129353 I

a score=567240.000000
s ce10.chrX             4469472 901 + 17718866  
s cb4.chrX              9754466 927 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1407695 927 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   158071 869 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2699476 882 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   32392 924 +   129353  
i caeJap4.Scaffold18206 I 1582 C 0

a score=-2075.000000
s ce10.chrX             4470373 1 + 17718866 -------A
s cb4.chrX              9755393 7 + 21540570 GAAACAG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   158940 1 +   386604 -------A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2700358 1 +  4147112 -------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   33316 0 +   129353 C
e caeRem4.Crem_Contig0  1408622 0 -  4500979 C

a score=-19736.000000
s ce10.chrX             4470374 120 + 17718866 TTCTGATTAAAAATTGATAATTATTAAAGCACggtggagatagctcatagggatggtcgctagtaatcatgaggtcacaagct------------------------gagtttctgcctttttcgcagaccttaattaga--------------------aatt
s cb4.chrX              9755400 158 + 21540570 ATTTGGTTGGAGACTCACAGGCATCC---TTTGCTGGTCTCTGCTTATTTTTAC--TAGAAAGACACCTCTCAGTTGTCGGCTTGTAACTTCTGTCATGAGTAGAGAGATGTT-TGGCTTTTGGGTAAATTTCGACCAGGTGGACTCAGGTTTTGGTCATATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1408622  33 -  4500979 --------------------------------------------------------TGGAAGG---------------CGGAT---------------------------------GCTTTT-------TTCGGATCACG--------------------ATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2700359  26 +  4147112 ---------------------------------------------------------------------------TGTCAGCT----------------------GGGAGGTT---CCTTCT--------------------------------------ATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   33316   0 +   129353 C
e caeSp111.Scaffold622   158941   0 +   386604 C

a score=-5461.000000
s ce10.chrX             4470494 33 + 17718866 ggagcaatcctagactgaaaaagcgaacacagt
s cb4.chrX              9755558 13 + 21540570 TG--------------------GCAATCATAGA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1408655 13 -  4500979 TG--------------------TTGAACAcagt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2700385  8 +  4147112 T-------------------------CCACAGA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18206   33316  3 +   129353 ------------------------------GGA
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   158941  0 +   386604 C

a score=264.000000
s ce10.chrX             4470527 20 + 17718866 ccctcgactggttttagtta
s caeJap4.Scaffold18206   33319 13 +   129353 ------ACTTGTCTTa-tta
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2700393  2 +  4147112 I
e cb4.chrX              9755571 19 + 21540570 I
e caeSp111.Scaffold622   158941  0 +   386604 C
e caeRem4.Crem_Contig0  1408668  0 -  4500979 C

a score=-25274.000000
s ce10.chrX             4470547  87 + 17718866 aagccgagaggTGCGCCAAGATCCGCCGTGCTTAAAAATTGTGA---------------AATGAA-----------------TCTGATCCATCTGACTTCTGATCCTTTTTTCATTTTC
s cb4.chrX              9755590 100 + 21540570 -----------AACGTTGA--------GAGCTAAAGCGATCTTTCCAGACTTAAATCATAAGCAAACTCCGGCCAGTATTTGCCGGCAACAGCCGGCTTATGACCTATCATCCATTACC
i cb4.chrX              I 19 C 0
s caeSp111.Scaffold622   158941  29 +   386604 -----------------------------------------------------------AAGCAA-----------TAAT--CCCGTTGCATTCAACTTGT------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2700395  23 +  4147112 ---------------------------GTGCTCATGA----------------------TAGCAA-----------------------------AACTTGT------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18206   33332  23 +   129353 ----------------------------------------------------aaatgggaaaaaa-----------------aatgccaaat---------------------------
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1408668   0 -  4500979 C

a score=342246.000000
s ce10.chrX             4470634 366 + 17718866 AAGAACAATTGAATCTACTAA-------TAACTAAATCTCTTTTTTTTCAGACAAGATCGACCAAGGATTGTACAATGGATACCAAGAGCGCGTCAACTTCTTCAAGGGACTCATCCAAGAAGATCTTAAGGAGGCTGTTGAGTTCAAGAAAACATCTGCCAAGCAGACCGAGTCTTTGAACTCCATCAAGGAATCCTACCCAACAGCACTCAAGGAGAGCATGGCCCTTCAACTTGAGGCCACATACAGAAAGAACGTCCAATCCGTGGCCACCGAATTGAAGCGCCGTATCGACTACCTCAAGGAGACCGAGGAGAGCAAGGCTCGCGTCGAGCGGGAGCAGCTCCTCAAGCTTATCAACAGCGAAGTGAG
s cb4.chrX              9755690 359 + 21540570 --------------ACATAAGGCGACCTTAACTAAATCATTTGACTTTCAGACAAGATCGACCAAGGACTCTACCAGGGATACCAAGACCGTGTCAACTACTTCAAGGGACTCATCCAGGAAGATCTCAAGGACGTCGTCGAGTTCAAAAAGACCTCGGCCGCCCAAACCGAGTCTTTGAACTCCATCAAGGACGCTCTCCCAACCGCCCTCAAGGAGTCCATGGCTCTTCAACTTGAGGCCACCTACAGAAAGAACGTCCAGACCGTCGCCACTGAACTCAAACGCCGTGTCGACTACTTGAAGGAGACCGAGGAGACCAAGGCTCGTTTCGAGAAGGAGCAACTCCTCAAGCTCATCAATGACAGTGTGAG
i cb4.chrX              C 0 I 84
s caeRem4.Crem_Contig0  1408668 350 -  4500979 ----------------aaaaa-------taattaatgaCTGTCGTTTTCAGACAAGATTGACCAGGGATTGTACCAAGGATACCAAGATCGTGTCAACTACTTCAAGGGACTCATCCAGGAAGATCTCAAGGACGTCGTAGAGTTCAAGAAGACCTCAGCCGCTCAAACCGAGTCTTTGAGCGCTATCAAGGAAGCTCTGCCAACCGCCCTCAAGGAGAGCATGGCCCTTCAACTTGAGGCTACCTACAGAAAGAACGTCCAAACCGTTGCCACCGAATTGAAGCGTCGTGTTGACTATTTGAAGGAGACCGAAGAGACCAAGGCTCGCTTCGAGAAAGAGCAACTCCTCAAGCTCATCAATGACAGTGTATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   158970 345 +   386604 ----------------------------TTCCTAAAACGagatattttcagacaagaTCGACCAAGGATTGTACCAAGGATACCAAGACCGTGTCAACTACTTCAAGGGACTCATCCAAGAAGATCTCAAGGACGTCGTCGAGTTCAAGAAGACCTCGGCCGCCCAGACCGAGTCCTTGTCCGCCATCAAAGAGGCTCTGCCAACTGCCCTTAAGGAGAGCATGGCTCTTCAACTTGAGGCTACCTACAGAAAGAACGTCCAAACTGTCGCCACTGAATTGAAGCGTCGTGTTGACTACTTGAAGGAGACTGAGGAGACCAAGGCTCGTTTCGAGAAGGAGCAACTTCTCAAGCTCATCAATGACAGCGtacg
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2700418 350 +  4147112 ----------------ATCAG-------TTTTTAACCGGCATTGTTTTCAGACAAGATCGACCAAGGATTGTACCAAGGATATCAAGACCGTGTCAACTACTTCAAGGGACTTATCCAAGAAGATCTCAAGGACGTCGTCGAATTCAAGAAGACCTCGGCCGCCCAGACCGAGTCTTTGACCGCCATCAAGGAGGCTTTGCCAACCGCCCTTAAGGAGAGCATGGGACTTCAACTTGAGGCCACCTACAGAAAGAACGTTCAAAGCGTCGCCACCGAATTGAAGCGTCGTGTTGACTACTTGAAGGAGACTGAGGAGACCAAGGCTCGTTTCGAGAAGGAGCAACTTCTCAAGCTTATCAATGACAGCGTGAG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18206   33355 328 +   129353 ---------------------------------------------ttGCAGACAAGATCGACAACTCCTTGTACCAAGGATACCAAGAGCGCGTCAACTATTTCAAGGGACTCATCCAAGAGGACCTTAAAGACGCCGTCGAGTTCAAGAAGACTTCTGCCGCCCAGACCGAATCTCTTGTCGCCATTAAGGAGGCCTTCCCAACTGCTCTTAAGGAGAGCATGGCCCTCCAGCTTGAGGCCACCTACAGACAAAATGTGCAGTCTGTGGCGACCGAATTGAAGAAGCGTGTTGATTATTTGAAGGAAACCGAGGAGACTAAGGCCCGCTTTGAGAAGGAGCAGCTTCTCAAGCTTATCAACAGCAGCGtacg
i caeJap4.Scaffold18206 C 0 C 0

a score=250.000000
s ce10.chrX             4471000 10 + 17718866 TTTTGGCTTG
s caeRem4.Crem_Contig0  1409018  2 -  4500979 --------TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   159316 10 +   386604 ttttcttttt
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2700769 10 +  4147112 GTTTGTATCT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18206   33683 10 +   129353 ttttttgttg
i caeJap4.Scaffold18206 C 0 I 13
e cb4.chrX              9756049 84 + 21540570 I

a score=-3755.000000
s ce10.chrX             4471010 41 + 17718866 AGTGGAGGAAGCAACAATTAAATTATCGGAAGTTTCCATGA
s caeRem4.Crem_Contig0  1409020 25 -  4500979 CTTGAATAGAGCGAACATTGA----------------ctga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   159326 14 +   386604 atgttaaaaa---------------------------ttga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2700779 41 +  4147112 TTTTCATAAAGCTAATTTTACGCCGATAGAATTTTTGCTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   33693 13 +   129353 I
e cb4.chrX              9756049 84 + 21540570 I

a score=1563.000000
s ce10.chrX             4471051 10 + 17718866 AATTAATTAA
s caeRem4.Crem_Contig0  1409045 10 -  4500979 atcttttgaa
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   159340  7 +   386604 ---taatgag
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0      2700820  7 +  4147112 ---TGCTGAA
i caePb3.Scfld02_0      C 0 I 71
s caeJap4.Scaffold18206   33706 10 +   129353 aattatttaa
i caeJap4.Scaffold18206 I 13 C 0
e cb4.chrX              9756049 84 + 21540570 I

a score=168125.000000
s ce10.chrX             4471061 314 + 17718866  
s cb4.chrX              9756133 373 + 21540570  
i cb4.chrX              I 84 I 10
s caeRem4.Crem_Contig0  1409056 275 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 2579
s caeSp111.Scaffold622   159353 288 +   386604  
i caeSp111.Scaffold622  I 6 I 9
s caePb3.Scfld02_0      2700898 478 +  4147112  
i caePb3.Scfld02_0      I 71 I 13
s caeJap4.Scaffold18206   33716 295 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=-1806.000000
s ce10.chrX             4471375 48 + 17718866 GTTTTTCTTTGAATCTAA----------------TTTTTTAACTGTTTTTT----------TATTAGTTACTGC
s cb4.chrX              9756516 51 + 21540570 TTTTTTCCTTACTTTTGAG---------------TTTTCTCTCTAAACCTTCT--------TGTTAGTTACTGC
i cb4.chrX              I 10 I 460
s caeSp111.Scaffold622   159650 51 +   386604 --TATTtcataaatttaaa---------aactttttgtttttttgtctc------------CGTTAGTTACTGT
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0      2701389 61 +  4147112 tgtttttgaaaaactcaaa---------cttttcTGTTCTCTCTGACCCGTAT--ACTT--TGTTAGTTACTGT
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18206   34011 70 +   129353 ----gtaaataaataaaaaaaaacacgaatttTTACCTTTCATTGTTccgtttttatttacaattagTTATTCC
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=9118.000000
s ce10.chrX             4471423 30 + 17718866 --CAACTTTAAATAAAGTAGTGTTGAATTGAA
s caeSp111.Scaffold622   159701 28 +   386604 --CAACTGCCAATAAATTAGTGTtgaattg--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2701450 30 +  4147112 --CAACTATCAATAAATTAGTGCTGAATTGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   34081 32 +   129353 TGAAATATCGAATAAATTAGTGTTGAATTGAA
i caeJap4.Scaffold18206 C 0 I 2706
e cb4.chrX              9756567 460 + 21540570 I
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=-9348.000000
s ce10.chrX             4471453 196 + 17718866 TATTCTGCGGAAATAGTACAAAATTGGTGGGCTAACACAATTTTGAAAAATGTTAAGAATTGAATACGTTTATATTTTATTTTAC-TAACATTcgccagtgggaaatttgttaaaagccacatttctgtggccaa----aaaaccccatctcat--------agtaaaacttaaaaaaaaacgtttgaattttttcaaaattttgtttc
s caeSp111.Scaffold622   159729  86 +   386604 ------------------------------------------------------gatttttgaa-------taagttGGTTCTGC-TTATGGTAATCAG------------------------TCCTGTG---------ATAACTGTCTACTATTGTATTTAGGGCATATTCAGG----AG-----------TTTC-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2701480 114 +  4147112 TG---------------------------------------------------TGataattcaa-------atatttgacTTAACGTTAGGATAACT--------------------------TCCTGTGGTCCGAGTTACaaatttatcgttttttttctatgtaattttcaggtgaaaa-----------tttcaaaatactttttc
i caePb3.Scfld02_0      C 0 I 70
e caeJap4.Scaffold18206   34113 2706 +   129353 I
e cb4.chrX              9756567 460 + 21540570 I
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=-2693.000000
s ce10.chrX             4471649 108 + 17718866 aaaaagtggtaattactcagttattaccacttttttggaattcgtcagccacaaaacctttgatttatgtgttctacttatgttcaaatattaatattcaattattgt
s caeSp111.Scaffold622   159815  27 +   386604 AGA------------------------------TTGGGAACAAGTGCGGGATaagac---------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2701594  70 +  4147112 I
e caeJap4.Scaffold18206   34113 2706 +   129353 I
e cb4.chrX              9756567 460 + 21540570 I
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=-20128.000000
s ce10.chrX             4471757 469 + 17718866 agaaatatgggcatgcgacagcgttattg----ttttctttaaaaAAGAAGCAAAAATTTTCTGGAAATTGCAGTTTAAGATGAGAAAGTATTTGAAATTTGATAAAACTCCGAATAACTTTGGTGCTTTTCAAAATAATAACAGAACACCAAAATGTTCATTTACCGTGCTATTATTTTTACAATTTAACTTTTTAGGCATTCATAGAGCATATTTTTCAATAATATTCCATTTTAAACAATT---TTATTTAGAGTTTTTTAAAAGG-----TATTCCTAGAAAAAATA-CATTCAAAAAATAT---CAA------TGGATTTTTCCCTAATTTTTTATTGAACTACCCCTGAACTTACAGAATTTTTCCCATTTCGAATTGTTTTCTGTAATACGGTATGCAACAGTGTTTCCACGAAGCTGACATTTGCATCCTTTACATATTTTCAATTTTCTGTGTTGTTTTCAATCACAAAATATTTTTTAAAG
s caeSp111.Scaffold622   159842 362 +   386604 aaaaatatatgaa----acaGCTTGAAGA----TGGTACCCGAAAAACTA------------------------TGgcacaaaaaaaggaaatggaaaattacTTCGTCTTGGAGta------tcgattttcgaaatatgaagaaagcACAATATAACACATGCATCGTATGAAGTCCTATAAAGTT--------------ATTGTAAAAC----TTGTC-ATTAAGTTCCCTTAAAAA---TTAGATCATCTACTGAActtcaaaaacgttttcatttATGATAGCCGCAGGagtttaaaaacaa---aaa-------gattggTTGATtcattgttt---gaa--------aaatgtgttgaa-tgttaacttt---gatttttttc---agcttggCATGTAAAAGTC----------GTTTCTTTGTGCAGCCTTgag---tcttcaa-----------------------aaa-----ttcgaaga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2701664 356 +  4147112 AGAGCTTTGGGCA----ACTGACATAACATTTCTATCGCTCAACAATAAA------------------------TGCATCATAATGCAGGAGTGGAGATT------GTGATAAGATAG----GCTGGTTGTGCAATCAGGGTCAAATAATGgtgttttcaatatatt--------ttctgCGCAATT--------------TACTCAAAA------TGCCAACTGACTTGAACGAAAAACGGTTTCAATATGTAGCACAGTCTAAAAAC-TTCTTAT---TGTCAGACGCA-AATTCTAAGAGTAAGTTAAACATTTGCGtttgtttctttcatttttt----------------aggtCTACAC-TTGTCACATTCGCGATTGT---------CTCGGAATCCATGTTTG----------GCTCATGTACCCACCTTTGcc---tatttcatt--------------------caaa-----ttctgaga
i caePb3.Scfld02_0      I 70 C 0
e caeJap4.Scaffold18206   34113 2706 +   129353 I
e cb4.chrX              9756567 460 + 21540570 I
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=-1245.000000
s ce10.chrX             4472226 34 + 17718866 AACAATTATTTAT----------TTGTCGTGTAAGCAATTCATG
s cb4.chrX              9757027 38 + 21540570 AATAATTATTAAA------GATTTTGTAAAGCAAATGGCGTGAG
i cb4.chrX              I 460 C 0
s caeSp111.Scaffold622   160204 32 +   386604 aacatttattgaa------------aggaaaaggaaaatttgaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2702020 44 +  4147112 aatcatTATTCAATATCAAGCTTTTATTCAATATAAagcagaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   34113 2706 +   129353 I
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=-2153.000000
s ce10.chrX             4472260 1 + 17718866 -T
s cb4.chrX              9757065 1 + 21540570 -A
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   160236 1 +   386604 -g
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2702064 1 +  4147112 -g
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18206   36819 1 +   129353 t-
i caeJap4.Scaffold18206 I 2706 C 0
e caeRem4.Crem_Contig0  1409331 2579 -  4500979 I

a score=99889.000000
s ce10.chrX             4472261 553 + 17718866  
s cb4.chrX              9757066 546 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1411910 540 -  4500979  
i caeRem4.Crem_Contig0  I 2579 C 0
s caeSp111.Scaffold622   160239 570 +   386604  
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2702067 569 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18206   36820 504 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=1820.000000
s ce10.chrX             4472814 2 + 17718866 AA
s cb4.chrX              9757612 2 + 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1412450 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 I 41
s caePb3.Scfld02_0      2702636 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   37324 2 +   129353 AA
i caeJap4.Scaffold18206 C 0 I 75
e caeSp111.Scaffold622   160809 0 +   386604 C

a score=-225.000000
s ce10.chrX             4472816 5 + 17718866 TAAAA-
s cb4.chrX              9757614 5 + 21540570 -aaaaa
i cb4.chrX              C 0 I 32
s caePb3.Scfld02_0      2702638 5 +  4147112 TGGAA-
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18206   37326 75 +   129353 I
e caeSp111.Scaffold622   160809 0 +   386604 C
e caeRem4.Crem_Contig0  1412452 41 -  4500979 I

a score=0.000000
s ce10.chrX             4472821 382 + 17718866 ACGATTTGAAAAATAATTATATAGTGCCGGCCAATACTCTTTCGTCTACGGGTTTTCGGAAATTCGTTTGAGTTGTTCAAACAAGAAAAACTTAAAAACTATGATAGTCAGGTAAACATTTTCCACtaaaaattaattttttaaaattttttaGAAGATGACACTCGGCGGATCCGTTTTTGACTGAAATTTCTAAATGAGCCACAATGTGTGTACTCAAAATCAGAACCGTCGGATGCCAGATGCTGTAACTTTTTCGAATAAGCGTTATATAACTCTGACATTAACAATAATTTAGAAAAAACTGGGAATACTTTGTAAGTAGAAAATAGTTTGCTAACTACCGAAACTTTATCAAACTTGTTGTTTTGGCCGCGTTTAT
e caePb3.Scfld02_0      2702643  31 +  4147112 I
e caeJap4.Scaffold18206   37326  75 +   129353 I
e cb4.chrX              9757619  32 + 21540570 I
e caeSp111.Scaffold622   160809   0 +   386604 C
e caeRem4.Crem_Contig0  1412452  41 -  4500979 I

a score=158.000000
s ce10.chrX             4473203 50 + 17718866 AAGTTTATATATTTCTAAC-TATAAGTATCATCAAATC--TACTTGAAATCCC
s caeSp111.Scaffold622   160809 47 +   386604 AAATTACTATGTTTTAAGCATATAGATAATAATAGATCATTATTTGG------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2702643 31 +  4147112 I
e caeJap4.Scaffold18206   37326 75 +   129353 I
e cb4.chrX              9757619 32 + 21540570 I
e caeRem4.Crem_Contig0  1412452 41 -  4500979 I

a score=7438.000000
s ce10.chrX             4473253 31 + 17718866 TACCAATTGCTTTA---TCAATCCCAC---CTTC---CGC
s cb4.chrX              9757651 37 + 21540570 TACCTATGGCTTTTAAATCAAGTTCATTGGTCTC---AGA
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0  1412493 31 -  4500979 TACCTAATGCTTTT---TCgatatcat---tttc---att
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold622   160856 34 +   386604 TACCTATGGCTTtg---tcaatttcat---tttcagtgtt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2702674 34 +  4147112 TACCGATGGCCTTG---TCGAGTTCGT---TTTCCGTAGT
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18206   37326 75 +   129353 I

a score=266149.000000
s ce10.chrX             4473284 548 + 17718866  
s cb4.chrX              9757688 535 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1412524 550 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   160890 529 +   386604  
i caeSp111.Scaffold622  C 0 I 35
s caePb3.Scfld02_0      2702708 492 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   37401 555 +   129353  
i caeJap4.Scaffold18206 I 75 C 0

a score=-6067.000000
s ce10.chrX             4473832 42 + 17718866 ACTCAAATTAATGTTTTTCAATCGTTCCACATATAATTGAAC-----------------
s caeRem4.Crem_Contig0  1413074 32 -  4500979 ---------aatgtttttt-gttatacGACAGGTGTTCAATG-----------------
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2703200 32 +  4147112 ---------aatatacatt-ttcatAGCATGCTAAACTAGTT-----------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18206   37956 42 +   129353 --------AAAGATATTAT---------GTATGTAACTGATTCAGAAACCGTTTTAATC
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9758223  0 + 21540570 C
e caeSp111.Scaffold622   161419 35 +   386604 I

a score=882112.000000
s ce10.chrX             4473874 1119 + 17718866  
s cb4.chrX              9758223 1105 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1413110 1107 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   161454 1109 +   386604  
i caeSp111.Scaffold622  I 35 C 0
s caePb3.Scfld02_0      2703234 1107 +  4147112  
i caePb3.Scfld02_0      I 2 I 11
s caeJap4.Scaffold18206   37998 1065 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=-6815.000000
s ce10.chrX             4474993 54 + 17718866 aaataattaataaCTACGTATCGCActacgcaatgcagatctgggcttcagata
s caeRem4.Crem_Contig0  1414217 18 -  4500979 ------------------------------------AAgttttggattcaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   162563  2 +   386604 --------------------------------------GT--------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   39063 11 +   129353 AATAAGTTAAT-------------------------------------------
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2704341 11 +  4147112 I
e cb4.chrX              9759328  0 + 21540570 C

a score=-191.000000
s ce10.chrX             4475047 11 + 17718866 cactgctcagt
s caeJap4.Scaffold18206   39074  6 +   129353 -ACTGAT----
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2704341 11 +  4147112 I
e cb4.chrX              9759328  0 + 21540570 C
e caeSp111.Scaffold622   162565  0 +   386604 C
e caeRem4.Crem_Contig0  1414235  0 -  4500979 C

a score=0.000000
s ce10.chrX             4475058 78 + 17718866 gatgctcccactagggtttacatcaagccacgtccaagccgtggactatggccggtaatccattcgcggaatatttcg
e caePb3.Scfld02_0      2704341 11 +  4147112 I
e caeJap4.Scaffold18206   39080  0 +   129353 C
e cb4.chrX              9759328  0 + 21540570 C
e caeSp111.Scaffold622   162565  0 +   386604 C
e caeRem4.Crem_Contig0  1414235  0 -  4500979 C

a score=-4051.000000
s ce10.chrX             4475136 59 + 17718866 tttcttaattgaaactgtgtgaacctagtggggaggcagggcgtgaacttgtgatttcg
s cb4.chrX              9759328 20 + 21540570 tttttttttcgaaa---------------------------------------atttca
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2704352 11 +  4147112 ---------tgaaa---------------------------------------ttttga
i caePb3.Scfld02_0      I 11 I 1
s caeJap4.Scaffold18206   39080 12 +   129353 --------TTAATT---------------------------------------ATCTTG
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   162565  0 +   386604 C
e caeRem4.Crem_Contig0  1414235  0 -  4500979 C

a score=-5098.000000
s ce10.chrX             4475195 42 + 17718866 ttattgctagcggcaatcactacctgctgagctatTCCCGCT
s caeSp111.Scaffold622   162565 29 +   386604 TtactgaaaactgaaatcattGTCTTATA-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2704364  4 +  4147112 -------aaac-------------------------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18206   39092  8 +   129353 GTACTGAT----------------------------------
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9759348  0 + 21540570 C
e caeRem4.Crem_Contig0  1414235  0 -  4500979 C

a score=1193099.000000
s ce10.chrX             4475237 1572 + 17718866  
s cb4.chrX              9759348 1586 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1414235 1596 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   162594 1553 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2704368 1564 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   39100 1509 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=-15837.000000
s ce10.chrX             4476809 189 + 17718866 CTAAATTTATATTACAGTTTTTAGTACGAAGTTGAAGGTAGATGTCGTGGTGCTAAAACGACAAAAATATCATAGTTAAACttttcaaaattgtttgaaaaattttaattgaaaatcaaaaagtggtcattttaacaccacagcagtgg--tttataacaacttcaaaactggtgctactGAAAAGCTTAC
s cb4.chrX              9760934  49 + 21540570 CTAAACcaa-------------------------------------------ttaaaac-----------------------------aattttt--------------------------------------------------------ctgacaataactgata--------------agatgtttaC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1415831  47 -  4500979 CTGAAACCA-------------------------------------------CT------------------------------------TTGTT--------------------------------------------------------TTTATTATACCCTTCA---------CTTTCACAGGCTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18206   40609  66 +   129353 ctgaaat---------------------------------------------ttaaaaa---------------------------aaatatatt-----------------------------------ggaAACGCCACGGCTgtgagcaaaaaaataacttgaa------------------ACTTAC
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2705932   0 +  4147112 C
e caeSp111.Scaffold622   164147   0 +   386604 C

a score=342243.000000
s ce10.chrX             4476998 463 + 17718866 CCAAAGTTGGCATTGAAAACCATCTCTTCTTGTCGAGCCCTGGATCTCGGAGAAGACCACATATCAACAACATTTGTCGACTCTTTGTGATAAATCATTCCTGGCAAGCAGAAAATCAGAACGGCACATCCTATGAAAAAGTGAGACTTTGGATTGCGTCCCGCCATCATTCCAATATCTCGAGCATTGTTCTCCATGAAGTTGTGAATCCAGGCACCGGTCCGTTTGATTCTGTTCCGTTTCGGGGATTCTTCTCCAGATTGTGTTTGCCTCAAGTTCTGAAATATGCCTTTTTACT--------TTTTTTTT--TCAAGTATTGATTTTTC-AATGTCCAACCGTGTAGTCTTCGTCATATGATGTGAATACAAATCCAACACAAAGAAGCACGGCAAGTGAGCCGATGAAGGCGAGCATGACAAAAATGTTCAGGCAGGCGATGCCATGAACATTGCAAGTTTGCTGAAAT
s cb4.chrX              9760983 454 + 21540570 CCAAAGTTCGCGTTGAAAACTGTCTCCTCTTGACGAGCTCTGGATCTTGGTGATGACCACATATCAACAACATTAGTCGACTCTTGATGATAAATCATTCCCGGCAGACAGAAGATAAGAACAGCGCAGCCGATGAAGAAATGTGATTTTGGGTTGCGTCCAGCCATCATTCCAATATCTCGTGCATTGTTCTCCATAAAATTATGGATCCATGCTCCAGTCCTTCGGATTCGGTTTCGTTTTGGTGACTCTTGACCAGCTTGGTTTTGTCTCAAGTTCTGAAG----------AAAA--------TTGTAATC--GATGGAAACATGTGCAAAGTTCGCTTACAGTGTACTCTTCGTCATACGAAGTGAACACGAATCCCACACAAAGGAGGACAGCCAGAGATCCAATAAATGCCAGCATAACAAAGATATTGAGGCATGCGATTCCGTGAACATTGCaagattgctgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1415878 455 -  4500979 CCAAAGTTAGCATTGAAAATCATCTCTTCCTGACGAGCTCTCGATCTTGGAGATGACCACATATCAACAACATTTGTGGACTCTTTATGGTAAACCATTCCCGGCAAACAGAAGATAAGAACAGCACAACCAATAAAGAAATGCGACTTTGGATTGCGACCAGCCATCATTCCGATATCTCTCGCATTGTTCTCCATGAAATTGTGAATCCAAGCTCCAGTCCGTTTGATTCTATTCCGTTTCGGAGATTCTTCACCGTTTTGATTTTGACGCACGTTCTGGAat--------taaaataaactttttgcattt--tatgaAGCTTTTGGCGA---------ACCGTGTATTCCTCATCATACGAAGTGAACACAAATCCGACACAAAGAAGAACAGCGAGAGATCCAATAAATGCCAACATGACGAAAATGTTGAGGCAGGCGATTCCGTGGACATTGCAAGATTGCTAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   164147 452 +   386604 CCAAAGTTTGCATTGAAGACAGTTTCTTCTTGACGAGCTCTTGATCTGGGTGAAGACCACATATCAACGACATTGGTTGATTCTTTGTGATAGATCATTCCTGGAAGGCAGATGATGAGAATAGCGCATCCGGTGAAGAAGTGagattttggatttcttCCAGCCATCATTCCAATGTCTCTTGCATTGTTCTCCATGAAATTATGAATCCATGCACCGGTTCTCTTgattctatttctctttggTGACTCTTCTCCAATTTGACTTTGTCTCACATTCTGAAATC-------cccta--------ttctttttcctctaaCAACATTTTGT-------CTTACCGTGTAATCTTCCTCATATGATGTGAAGACAAATCCCACACACAAAAGTACAGCCAAAGATCCAATAAACGCCAACataacaaaaatattgagaCATCCGATTCCATGAACGTTACAGGATTGCTAAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2705932 445 +  4147112 CCAAAGTTAGAGTTAAACACTGCTTCCTCCTGACGAGCTCTTGATCTTGGAGAAGACCACATATCAACAACATTAGTGGATTCTTGATGATAAATCATTCCGGGGAGACAGAAGATGAGAACGGCACATCCAATAAAGAAATGGGACTTTGGATTTCTTCCAGCCATCATTCCAATATCTCTGGCGTTGTTCTCCATAAAGTTGTGAATCCATGCTCCAGTTCTCTTGATTCTGTTACGCTTTGGAGACTCTTCACCGGATTGGTTTTGTCTCAGGTTCTGAACGA-------TCAGG--------GTGTGATT--TTCATCATTGTTTGGTG-TGTAGCTAACCGTGTAGTCTTCTTCATATGATGTGAATACAAATCCAACACAGAGAAGTACAGCTAGAGATCCAATAAATGCCAGCATAACAAAGATATTGAGACAAGCGATCCCGTGGACATTGCAGG-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   40675 408 +   129353 CCAAagtttgaattgaaaatcatttctTCCTGACGGGCTCTGGACTTTGGAGAGGACCACATGTCTATCACATTTGTGGATTCTTTATGGTAAATCATTCCTGGCAAGCACAAAAGCAGAATTCCACATCCGAGAAAGAAATGTGCTTTTGGATTGCGTCCAGCCATCATTCCAATGTCTCTTGCATTGTTTTCCATAAAGTTTTGGATCCAAACTCCAGTTCTCTTTATTCTCCCCCGTTTCGGTGTTTCCTCTCCAGCCTGCGTTTGTCTCAAGTTC--------------TCATA--------CTG--------------------------------------------ATCGTCATATGACGTGAAGACACATCCGACACAGAGAATGATTGCGAGAGATGCGATGAAAGTCAGGATGATAAAAATCTTGAGACATTCTATGCCATGCACATTGCATGATTGCTGAAAT
i caeJap4.Scaffold18206 C 0 I 131

a score=-15943.000000
s ce10.chrX             4477461 88 + 17718866 ---------TGAAATTTTT-------TTTTCTCAATTTTCTAGGTGGCGAGACTCAAAAACTTTATTAAAACATCACGATGTTTCTCAATTATTTCAAATCCAA
s cb4.chrX              9761437 28 + 21540570 --------------------------ttttttcgattttct---------------------tcatt------------cttctctt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1416333 49 -  4500979 a------ttcatattgttt----gatttttgtgtattttcttatta----------------tcata------------tgttttat-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   164599 72 +   386604 TATTGACTTTAAATTATTTATCggactttttttgattctttagTTA-------------ACTTAGTTAa---------atattttgtgaaaatt----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2706377 54 +  4147112 --TTGGCTataaaatgtgt-------tttctttgAT------GTTG-------------ATCAAATT------------TATCTCCTAAACATC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   41083 131 +   129353 I

a score=233704.000000
s ce10.chrX             4477549 694 + 17718866  
s cb4.chrX              9761465 624 + 21540570  
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1416382 711 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   164671 659 +   386604  
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2706431 695 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18206   41214 674 +   129353  
i caeJap4.Scaffold18206 I 131 C 0

a score=-5800.000000
s ce10.chrX             4478243 36 + 17718866 --------GAGTC--AG--GGTTTTTACGAAAAATTGAAGTAGTACTA
s caeRem4.Crem_Contig0  1417093 31 -  4500979 ----------ATC--GG--AGATTT---GATAGTTTGAATCATGATTC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   165333 32 +   386604 --------Acatttgtg--attttt---gatatgTT---ATATCAAAG
i caeSp111.Scaffold622  I 3 I 4
s caePb3.Scfld02_0      2707129 33 +  4147112 --------GTATT--TG--AGtgtt---gaaatattgaaacatcaATG
i caePb3.Scfld02_0      I 3 I 4
s caeJap4.Scaffold18206   41888 40 +   129353 TAAAGCGCATATC--AGCTGATTTT------ATATTTGGATGTTTTTA
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9762089 40 + 21540570 I

a score=410863.000000
s ce10.chrX             4478279 700 + 17718866  
s cb4.chrX              9762129 701 + 21540570  
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0  1417128 710 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   165369 692 +   386604  
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2707166 756 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18206   41928 720 +   129353  
i caeJap4.Scaffold18206 C 0 I 231

a score=14285.000000
s ce10.chrX             4478979 157 + 17718866 TGAAA-------AGTGTTCCATTGATATCACACAACTTTCGCTTTTTTCGATTAGAGAGGG-AGCAATGAGTCACAATAA--TTTCGGAAGCGTTTTGACGGATGTGTAAGCTACGATGTTTTTTTTTGTAGTGCGC-------------TTGTTTCCGGATTATTTGCGTT--------GCTTTAGT
s cb4.chrX              9762830 112 + 21540570 TGTAATTACAC------TTCAC-----------------------------------------------CGTTACACTAA--TAGCCGAAAATTCATGACTCATAGATAGGCTACGGATATTT----TGTAGC-CAC--------GCAAAAAGTTTCTGGATTATTTGCACTTCCCTTGT--------
i cb4.chrX              C 0 I 106
s caeRem4.Crem_Contig0  1417838 157 -  4500979 TGTAATAGTTC------CGCAT-AATATTACATAA------GTTCTATTGATGGAAAGGAACAGCGATGAGTCACACTAA--AGTTGGATGAATTTCGACTTATGTGCAGACTACGCAGtttttttATGTAGTGCACTTGATTTGGGAGCATGTTTCGGGATTATTTGCATT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166061 147 +   386604 TGCAATCACACATGTTTTACAC--CTATCACACAA--------TATTTCAATCTGGGAGAACGCCGATGACTCATAGTGATATTTCAATTGATCCTTGGCTTATGTGCAGGCTACGGATTTTT--TATGTAGTGCAC-------------TTGTTTTGGTTGTATTTGCACT----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2707922 142 +  4147112 TGCAATTACATAGATAttacac--aaaaaacat------------tttcgatcGGAAGGAACAGCGGTGAGTCATACTGAT-TTTCGGATGACTTTTGGCTTATGTGCAGGCTAcggaacttt--tttgtagtGCAC-------------TTGTTTCGGTGTTATTTGCACT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   42648 231 +   129353 I

a score=3850.000000
s ce10.chrX             4479136 66 + 17718866 GGTTATTTTCGGTACAGAAAAAGTGTAAAAATTTAAAAACTAGTCGGATTA----TGGAAATTGGAAAAT-
s caeRem4.Crem_Contig0  1417995 61 -  4500979 AGACCTATTTGGAGCACAAAAC-----GCAGACAAAAAACTAGTCGTGCTT----GAGAAATAGATACAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166208 70 +   386604 TGCCCTTTTGGGAGCACAAAACACa-gacaaagagaaaactaGTCATACTTATAAAAGATATATTGAGAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708064 61 +  4147112 TGCCCTTTTGGGAGCACAAAAC-----ACAAAGTGAAAACCAGTCGTTTTT----gagac-tttcaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   42648 231 +   129353 I
e cb4.chrX              9762942 106 + 21540570 I

a score=-556.000000
s ce10.chrX             4479202 2 + 17718866 TT-
s caeRem4.Crem_Contig0  1418056 2 -  4500979 TT-
i caeRem4.Crem_Contig0  C 0 I 15
s caePb3.Scfld02_0      2708125 2 +  4147112 -tg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   42648 231 +   129353 I
e cb4.chrX              9762942 106 + 21540570 I
e caeSp111.Scaffold622   166278 0 +   386604 C

a score=357.000000
s ce10.chrX             4479204 46 + 17718866 TAGTTTGAAAATAGCGAAATAAAAATTTTATAAAAT-GTTTTAACCA
s caePb3.Scfld02_0      2708127 42 +  4147112 ga-----aaaattggagcctggaatttttaaaaaatagtcTCAAGCA
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold18206   42648 231 +   129353 I
e cb4.chrX              9762942 106 + 21540570 I
e caeSp111.Scaffold622   166278  0 +   386604 C
e caeRem4.Crem_Contig0  1418058 15 -  4500979 I

a score=0.000000
s ce10.chrX             4479250 571 + 17718866  
e caePb3.Scfld02_0      2708169  67 +  4147112 I
e caeJap4.Scaffold18206   42648 231 +   129353 I
e cb4.chrX              9762942 106 + 21540570 I
e caeSp111.Scaffold622   166278   0 +   386604 C
e caeRem4.Crem_Contig0  1418058  15 -  4500979 I

a score=-123.000000
s ce10.chrX             4479821 9 + 17718866 AGCAAAGTC
s caeSp111.Scaffold622   166278 9 +   386604 ATCAGTGAA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2708169 67 +  4147112 I
e caeJap4.Scaffold18206   42648 231 +   129353 I
e cb4.chrX              9762942 106 + 21540570 I
e caeRem4.Crem_Contig0  1418058 15 -  4500979 I

a score=546.000000
s ce10.chrX             4479830 2 + 17718866 AA
s caeSp111.Scaffold622   166287 2 +   386604 AA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   42879 2 +   129353 AA
i caeJap4.Scaffold18206 I 231 C 0
e caePb3.Scfld02_0      2708169 67 +  4147112 I
e cb4.chrX              9762942 106 + 21540570 I
e caeRem4.Crem_Contig0  1418058 15 -  4500979 I

a score=-1107.000000
s ce10.chrX             4479832 1 + 17718866 -A
s caeRem4.Crem_Contig0  1418073 1 -  4500979 -A
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold622   166289 1 +   386604 -A
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   42881 1 +   129353 T-
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2708169 67 +  4147112 I
e cb4.chrX              9762942 106 + 21540570 I

a score=1000.000000
s ce10.chrX             4479833 2 + 17718866 AA
s caeRem4.Crem_Contig0  1418074 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166290 2 +   386604 CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708236 2 +  4147112 AA
i caePb3.Scfld02_0      I 67 C 0
s caeJap4.Scaffold18206   42882 2 +   129353 AA
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9762942 106 + 21540570 I

a score=245113.000000
s ce10.chrX             4479835 449 + 17718866 CTTACCAGTTAGCAAATGGGGGCAAAACTCGACCATTTTCTCATATGCCGGATGAGTTTTGTCAAAAGCTGTGGGCTCCACATTAGTATCGTTGGTAACACATGGTCCATATGCATTTTCAGTATGCTTCTGGCACAATCCTCGCATGATACATCC---CGCGTCGCCATGATGGAATATAGACCCAAATAGCAAGCAAAAAATGAGTAGTTGTTTCATTTCTTGTGCATCGACTGAAAC--ATACGGGG-TATGTAAGAATGTAAAACAGACTGTTGGCGAGGGCGGCGG---------CACTTT-G-GCTCCGCCTCTTC-GAACA-CAAGCACACGGTTCAATGAAACTACTGAATTATTGACCGGGAGGTTAGA--CGTAGGGCGAGAGAGAGAGAAAGAAAATAAATCGAGAGGTCGAGAAAAA------GC---ATCAGGATGGTCACACGTTTTCTGACTCATCCC--CAGTCA
s cb4.chrX              9763048 454 + 21540570 CTTACCTTCCATCATATGCGGGCAGAATTCCATCATTTTCTCATAAGCAGGATGTTGTTTATCGAATAGGATCGGCTCTACATTGGTGCCATTGGTTACACATGGCCCGTAGGCGTCGTCAGTGTGCTTCTGGCACAATCCACGCATGATGCATCC---CGCGTGGCCATGGTGAAATATAGACCCAAACAGCAAGCAAAAAATGAGTAGTATGTTCATTGCTTGTGCATCGACTGAAAACGAGGAgcaa-t------gattttcaaatacagTCTTGGCAATGGGGGGAGGGGAAG---GGCACT-GAGCCCCGCCTCTTTCGAACA-CAAGCACA--GTTCAATGAAACTACTGAATTGTTGACCGGGAGGTTAGAGCGGGAGAAAGAGCAAGAAACATGGAA----------GAATTAGAGAAAGAAAGTGGGATGGAGCGAAATGGTCACACGTGCCCTGACTCATCGCTGGACTCC
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig0  1418076 444 -  4500979 CGTACCTTCCAACATGTGAGGGCAGAattccatcattttctcatAGGCTGGATGTGTTTTGTCAAAATCGATGGGTTCAACATTGCTGCTGTTGGTAACACAGGGTCCGTAGGCGTTTTCCGTGTGTTTGTGGCAGAGTCCTCGCATGATACATCC---CGCTTCGCCATGATGGAATGTAAACCCAAATAGtaagcaaaaaatgagtagTATGTTCATTGATTGTGCATCGACTGAAAC--AGGAGTGATT------GATTTTGAAACGGTCTCTTTAAAAAGAGGGCAGTCGA-----GACGTT-G-GTCCCGCCCCCTT-GAACA-CAAGCACA--GTTCAGTGAAACTACTGAATTGTTGACCGGGACGTTAGA--CATAGAGAGCGAAAGAAACATTGGAA-------TGgagtcagagaaaaa------gaaaaagcaaaatgGTCACACGTTTCCTGACTCATCAGCAGAGTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166292 418 +   386604 CGAACCTGTTAGCATATGAGGACAGAATTCCATCAGCTTGTCGTACGCCGGATTGGATTTATCGAATACTGTTGGCTCGACGTTGGTGTCATTGGTGACACATGGGCCATATGCGTCCTCCGTGTGCTTCTGGCAGAGTCCACGCATGATACATCC---TGTCTCGCCTCGAAGGAATAGACACCCAAGcagaaacaaataaatgaGTACGGTCCTCATGCTTGGTACATCGACTGAAAC--AGAAAGTT-T------GAATTTAGAGAATCGT-------ATGGGGGAAGGGTGAGCACGGCGTTAA-GGCCCGCCCCATT-GAACA-CAAGCACA--GTTCGATGAAACTACTGAATTGTTGACCGGGAGGTT----------ACAG----AGAAACATAGAA----------AAagtagagaagaa------aa--------ggtgATCACACGTTTTCTGACTCATCAA-AGAGTCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708238 430 +  4147112 CTAACCTGCTAACATATGGGGGCAGAACTCAACCATCTTCTCATATGCTGGATGGGTTTTATCAAAAGTGATTGGTTCCACATTGGTGCTGTTGGTAACACAGGGTCCATAGGCATCCTCAGTATGCTTCTGGCACAATCCCCGCATGATGCATCC---GGAATCAACATCTTGGAATATAGACCCGAATAGCAAGCAAAAAATGAGTAGAAGATTCATTGCTTGTGCATCGACTGAAAC--AG-TGGAA-T------GATTTTAAAGCATTTT-------ATGGGGGAAAGGAGAGCGACACATT-G-GGCCCGCCCCTTTCGAACAGCAAGCACA--GTTCAATGAAACTACTGAATGGTTGACCGGGAGGTTAGA--CATTGAGAG----AGCAGCaaagaa----------aagaggaacaagaa------aa--aagcagaatgaTCAAACGTAAACTGACTCATCAA---AGTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   42884 407 +   129353 CTTACCAGCTAGCAGATGAGGACAAAACTCCATCATCCTCTCAAAAGCAGGATGCTCTCGGTCAAAGTCCACCGGCTCAGCATTGGTGTCATTGGTTACGCACGGTCCGAACGCGTCGTCGGTGTGCTTCTGGCACAATCCACGCATGATACAACCCGTCGTTTCGGCATGATCGAATATGATAGTGAGTAGCAAGCATGAAAGCAGTAAGAGCTTCATTGCTTGTGCATCGACTGAAAC----Gcggta-a------aaatgtgaaacagTTT-TCTCAGACGGGAAGAGGAGCACGGCGGCGGC-G-GGACCGCCCACT--GAACA-CAAGCACA--GTTCAATGAAACTACTGAATTGTTGACCAGGAGGGAAGA-------------------------------------GGACACGAGAGAAA------TA----------TGGACGCACATTTACTGACTCATCac--ctttca
i caeJap4.Scaffold18206 C 0 I 153

a score=2617.000000
s ce10.chrX             4480284 98 + 17718866 GAAAACGTGCAAATGTGGTCTGTACAAAAGTA-AACTTCTAGAAG----------GAGAAACGCTACTTTATTTCAAACGAGAAACACAATAAAAAACCAGTGTTTGTC----
s cb4.chrX              9763502 69 + 21540570 GAAATC-TGTGAGTGTGGTCTGTACTAAGGTA-AATGTTC---------------TAGAAGAGTTC----------------------GCgt-aagttttttgtttgtt----
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig0  1418520 82 -  4500979 GAGA---TATAGTTGTGGTCTGTACAAAAGTA-AACTCTCAGAAGAAACACTTATTAAAAGCGGT-----------------------GCGTAAAAAGTTGTGTTTGTT----
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   166710 82 +   386604 AAGA---TATCGGTGTGGTCTGTAAATATTAATACCTTCTAGAAATATC------TAGCAGTTTCA----------------------GAGAAAGAGTTTGTGTTTGTTTGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708668 81 +  4147112 GAAA---TCTCGGTGTGGTCTGTACATATGTA-AACTTCTGGAAGAGTG------TGGAAAGCTGG----------------------AGAAAATTGTGTTTATTTGTTTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43291 153 +   129353 I

a score=-6589.000000
s ce10.chrX             4480382 34 + 17718866 ATGGAGCTCCAT-----TGAAAATGTTTGCGCATGAACT------------
s caeRem4.Crem_Contig0  1418606 35 -  4500979 ATTGAGCTGCTCATGAAGGCAAATGT------GTGTATTTT----------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   166792 37 +   386604 ATAGAACTGACT-----GACAAATG---------ACATTTTCATGACAATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708749  8 +  4147112 ATGTAACT-------------------------------------------
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold18206   43291 153 +   129353 I
e cb4.chrX              9763571 61 + 21540570 I

a score=-1954.000000
s ce10.chrX             4480416 23 + 17718866 CGAGTCAGAGAGAGTCTATCTCA----------
s caeRem4.Crem_Contig0  1418641 30 -  4500979 CAAACCACAGAA---TTGTCATAGAATATCACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166829 10 +   386604 ----------CG---CTGTCAGA----------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2708757 73 +  4147112 I
e caeJap4.Scaffold18206   43291 153 +   129353 I
e cb4.chrX              9763571 61 + 21540570 I

a score=-11272.000000
s ce10.chrX             4480439  84 + 17718866 AATTTTTTCACATCTGTGA-TTTTAG---AAATGTGTCATATTTT---AGTAGTTTAAAAAATATATTCA---------TTAATTGAAAACAGGAAAAAA-----------
s cb4.chrX              9763632 102 + 21540570 gattttgtgatttttatgtGTTCTGATATAAAGTGTCCAGGCTTTCCAATTTAccgtagaaaaaaaatcactaaacTTCGAAGCTTAAAAATAgagtagatt---------
i cb4.chrX              I 61 C 0
s caeRem4.Crem_Contig0  1418671  67 -  4500979 -ATATTTTGactatta----ttttga---aaagaggtcatgttttgt-ttttctagcAGTCAGATAGTCA--------------------------TAGACT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166839  59 +   386604 ----TTACGATATCT-----TTTTGT---------GTCAGATTTGTCACTTACTCAT-------TTGTCA---------------------------AGACTGGGAATaag
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2708757  73 +  4147112 I
e caeJap4.Scaffold18206   43291 153 +   129353 I

a score=-17486.000000
s ce10.chrX             4480523 68 + 17718866 CCTCTAGA--AGTACATAAAAGTTGGATGCAAAACA-----------CAAAAACCAAGCTGTGGGTCGAGCCTATTTCGAT
s cb4.chrX              9763734 58 + 21540570 tttttggataagGCTGAAAACGTTCAGGT-TCACTA-----------AAAAGTGGAGCCT-----------CATTTTTCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1418738 31 -  4500979 CTTCTAGA------------------------ACTA-----------CA----GAAATCT-----------GACATACGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166898 27 +   386604 ------------------agaattcagatgataata-----------gaaggaaga-------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2708830 68 +  4147112 --TCTATCAAACTGCACAAAAGATCATGTGTAActaacaaaaactttgaatgaaaCATCT-----------TGATTTCGAT
i caePb3.Scfld02_0      I 73 I 218
e caeJap4.Scaffold18206   43291 153 +   129353 I

a score=-19992.000000
s ce10.chrX             4480591 141 + 17718866 AATTTTTATTCTTGGCTGTGCTAGTTTAGATTTGAATACTGCGCTGATATTCCAAAACAGGCACCAAAATTTTTAATGATCAGAA--------------------------TTTTTTAACTTT------TTGAATAGTGAGCAGTT---------------------AAACACTAATTTACATTGGAGATATAA
s cb4.chrX              9763792 180 + 21540570 AACTTTT---------TGGTATAAACAAATTCTAAAAA---GGTATGCAGTTCGTAACAAA--TCAAGTTCTACAATTTCCAGAAACGCACTAATTACAGAGTCCTGGCAGTTTCTTAGTCTCTGTTgaatgaattttgagaaaaaagtgttaactaaaaaattaaagaatatTTCTATAGATTGTAGAAATAA
i cb4.chrX              C 0 I 99
s caeRem4.Crem_Contig0  1418769  45 -  4500979 ATTTTCT----------------------------------------CTATTCATAATAAG--AAAAACT-----------------------------------------------------------ATGAAGATTGAGCACAA------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166925  62 +   386604 aatttct------------------------------------------tttcgaaacag----cgaact---tgattttcagaa-----------------------------------------------aattttcggcAAATGGGGCGAAATGA------------------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2708898 218 +  4147112 I
e caeJap4.Scaffold18206   43291 153 +   129353 I

a score=-5567.000000
s ce10.chrX             4480732 94 + 17718866 CCACTGCTGCCAAAATGACGTGGCAAAAAATTGAATTTTAAAAACAAAACACCAAATGTGACTTCCATATGACTGCTGTATTCATA---------------------TTGTGAAA
s caeRem4.Crem_Contig0  1418814 68 -  4500979 ------CGAGC--AATGACGTGg---acatttaaaatttaaag----------------gTACATTATACTCTGATATAGTTTACGA--------------------CTgttaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   166987 74 +   386604 TACCTACTGTA--GATAACGTG---------------------------------------CCACTTTATACTGGCTccgttcagaaaaaaaaggaaaaaaaagaatccatAAAC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2708898 218 +  4147112 I
e caeJap4.Scaffold18206   43291 153 +   129353 I
e cb4.chrX              9763972 99 + 21540570 I

a score=-42.000000
s ce10.chrX             4480826 1 + 17718866 C
s caeRem4.Crem_Contig0  1418882 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622   167061 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709116 1 +  4147112 C
i caePb3.Scfld02_0      I 218 C 0
e caeJap4.Scaffold18206   43291 153 +   129353 I
e cb4.chrX              9763972 99 + 21540570 I

a score=6540.000000
s ce10.chrX             4480827 65 + 17718866 TTTGATTTTTAGGAGTTGATTTCTCTCAC---------------TCGTAAACTATTTT-----TTT--CTG--TGTGAAGAAGC--TGCTG
s cb4.chrX              9764071 77 + 21540570 --------------TTTGATTTCTAACTTCCCCGATTGTTTGTTTCATAAACTGTTTTCAACCTTTATCTAACAAAATACGAAGCTGACTG
i cb4.chrX              I 99 C 0
s caeRem4.Crem_Contig0  1418892 51 -  4500979 --------------tttgtttacag-------------------tcgtaaaccatttt-----ttttgccAACTAATAACGAGA--AGCTG
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622   167062 63 +   386604 TTTGACTTTTAGACATTGGTAACAG-------------------TCgtaaaccatttt-----ttt--ctcattatcaTAGAGA--AGCTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709117 62 +  4147112 TTTGGTTTTTGGA-GTTGGTTTCGG-------------------Tcgtaaactatttt-----ttt--ctcactaacAAGGAGA--AGCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43291 153 +   129353 I

a score=51608.000000
s ce10.chrX             4480892 113 + 17718866 ATGTAAGGCATTTTTAGCTGG---TTGTTGGCTAATTTTTTTC-------AGCCTTATCAGT-----GCACTGATAAAAATCAAAAATGAAGTGGAATATCAGGTTGTCCAAATTAGTCTATTGTTTC
s cb4.chrX              9764148 123 + 21540570 ATGTAAGACATTTTTAGCAGC---GAGCTGGGTAATTTT--CCTTGTGTGCTGCTTATCAGTGAGGGAAACtcgtaaaaatcaaaaacgaaATCAAATAACGGGTTGTCCAAATTAGTCTATTGTTTC
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1418943 110 -  4500979 ATGTAAGACGTTTTTAGACGA---CGGCTCgttaatttt--tc-------attcttatcAGT----CAAACccataaaaatcagaaacgaAATCAAATATCAGGTTGTCCAAATTA--CCGTTGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167125 104 +   386604 ATGTAAAACATATT-----------GGCTGGTTAATTTC-GTC-------CTCCTTATCAGT----CAACACAGGGGAATCAA-AAACGAAATCAAATATCGGGTTGTCCAAATTATTCCATTGTTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709179 110 +  4147112 ATGTAAGACGTTTTTAACTGG---CGGCTGGTTAATTTT-GTC---------TCTTATCAGT----AAAACTcgtaaaaatca-aaagaaaatcaaatatcaGGTTGTCCAATTTACTCCATTGTTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   43444  94 +   129353 ATGTAACGTGGTTTGAGCGGGCAACAGCTAGTCAATTTT--TG-----------TTATCAGT--------------AAGCTTA----TGAAATCAAATATCAGACTCTGAAAGTTACTCTATTGT---
i caeJap4.Scaffold18206 I 153 C 0

a score=-8161.000000
s ce10.chrX             4481005 25 + 17718866 TGTTTCTGTTTCAAACACGGAAAA-C-
s caeRem4.Crem_Contig0  1419053 12 -  4500979 -------------AACAAGGAAAAC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167229  7 +   386604 -------ACT----------AAGG---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709289 17 +  4147112 -------TTTCAACACAAGGAAAG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   43538 17 +   129353 --------TTGCAGGCGGTAAAAA--T
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9764271 14 + 21540570 I

a score=-1434.000000
s ce10.chrX             4481030 48 + 17718866 GAAAACGTGTGATAATGAAGCAAACTGAAAAAAGAACAACGATCGTAA-------------------
s cb4.chrX              9764285 38 + 21540570 GTAAATGTGTGATAA----------AATTAGCAGAACATCAGGTATTA-------------------
i cb4.chrX              I 14 I 1
s caeRem4.Crem_Contig0  1419065 30 -  4500979 --------GTGATAA----------ACGAGCCAGAACAGCGGTCATaa-------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   167236 39 +   386604 CAAACCGTATGATAA---------AAAGAGCTGTAAAAACAGAAAGga-------------------
i caeSp111.Scaffold622  C 0 I 26
s caePb3.Scfld02_0      2709306 39 +  4147112 AAAAGTGTATGATAA---------CGAAAGGCTGAACATCAATCATAA-------------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18206   43555 55 +   129353 --------GCGATAA----AACGAGAAAAAGTGGAACGTCACTCTAAAAATTCCATAGTGGGCTGAA
i caeJap4.Scaffold18206 C 0 C 0

a score=-1743.000000
s ce10.chrX             4481078 6 + 17718866 AACGTT-
s cb4.chrX              9764324 5 + 21540570 AACAT--
i cb4.chrX              I 1 I 18
s caeRem4.Crem_Contig0  1419096 5 -  4500979 aaaaC--
i caeRem4.Crem_Contig0  I 1 I 55
s caePb3.Scfld02_0      2709346 5 +  4147112 AACAT--
i caePb3.Scfld02_0      I 1 I 12
s caeJap4.Scaffold18206   43610 6 +   129353 AATAG-A
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   167275 26 +   386604 I

a score=-2879.000000
s ce10.chrX             4481084 14 + 17718866 TTGGTCATTTTTTT
s caeRem4.Crem_Contig0  1419156 13 -  4500979 tttatgaTTCATT-
i caeRem4.Crem_Contig0  I 55 C 0
s caePb3.Scfld02_0      2709363 11 +  4147112 TGGAATATTCG---
i caePb3.Scfld02_0      I 12 I 1
s caeJap4.Scaffold18206   43616  7 +   129353 ---TAGGTTT----
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9764329 18 + 21540570 I
e caeSp111.Scaffold622   167275 26 +   386604 I

a score=-188.000000
s ce10.chrX             4481098 4 + 17718866 TAAA
s caeRem4.Crem_Contig0  1419169 4 -  4500979 TATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167301 1 +   386604 ---g
i caeSp111.Scaffold622  I 26 I 3
s caePb3.Scfld02_0      2709375 1 +  4147112 ---G
i caePb3.Scfld02_0      I 1 I 9
s caeJap4.Scaffold18206   43623 4 +   129353 TGAA
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9764329 18 + 21540570 I

a score=-3935.000000
s ce10.chrX             4481102 16 + 17718866 AGAATTTATGAATC-------AT
s cb4.chrX              9764347 13 + 21540570 GGAGTTCAT----------TGGT
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0  1419173  2 -  4500979 ---------------------AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167305 23 +   386604 aaaatttatgattCATTTATGAT
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2709385 23 +  4147112 ACAATTCATGATTCAGTTATGAT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18206   43627 16 +   129353 GACATTCAAAGACCAC-------
i caeJap4.Scaffold18206 C 0 I 37

a score=-6544.000000
s ce10.chrX             4481118 38 + 17718866 GAT-ATATTCAATTTTTACACTTTTTAGCACCTCGTTAT
s cb4.chrX              9764360 34 + 21540570 ACT-GTagatgatttttaaaactt----tttttcttatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1419175 30 -  4500979 AAT-GTGAACAA----AGAAAATT----CGTCTCCAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167328 34 +   386604 CAT-TCAAACAATAACTTGATTGA----CGTGTCCTGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709408 35 +  4147112 AAtgtaaaacaataaaaaatggga----TGTCTTATGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43643 37 +   129353 I

a score=-11372.000000
s ce10.chrX             4481156 142 + 17718866 TCTTTTT-----------------------------------TTTGTTTTG-----------AGTCACAA----TAAAAA---ATC---------------------------------GTTTGGAAAATAGAAATAATGAAAAACGGCAGG------AAAATGAAAACAAAAGTG----------AAG---CTTGAGGG----TCCTTATGAGCAAAATATGTAAG-CGTCTCCAATTTCCCTGACGAC------GG
s cb4.chrX              9764394 191 + 21540570 ----------tatgaTTCA-----------------------TTTATGATAAAACAGGGCAAAGTTAAAATACGGAAATA---AGCGTCTTGGCTTTACGCATTGTATTTTCTCCACTGACTCacaaaaaacgg-----gaaaaaaaggagaaaacatattttgaaacaatgCGCG----------AAACGAGCAAAGGG----CCCCT------TCAATATGTAGAGCGTCTCCGATTACCTTGACTAC------AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1419205 165 -  4500979 TCAATCT--GTACAGTTGG-----------------------CCCTTCCCAGCACATTCGTGAGTCACAA----AAAATG---AGGgcat-----------------------------attcgagaaaaaacg-----gaaaagaaggatg------attttgaaacaaagcGCG----------TGAGGACCGCAAGG----CCCTTCAAAACTGAATATGTGGA-CGTTTCCTATTTCCTTGGCGAC------GA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167362 158 +   386604 TCAGATT--ATACAGTGG------------------------CCTTTTTTGGGGCCT-----AGTCACAA----GAAAGAGGCGGCACAC-----------------------------gttt---cgggaa--------aaaagaaagatg------attttgaaactatgCGAG---------AGGACGCCCTAGAGG----TCCTTCAAAACTGAATATGTAGG-CGTCTCCGATTTCCTTGACGACC-----GG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709443 185 +  4147112 TC-GATTCAATACAGTAGGGCCGCcgtttttgttctatttttcctcctttg-----------agtcacaa----aaaatg---ggcacac-----------------------------attcgaacaaaaa--------aaggaaaggatg------ACTTTGAAACTATGTGAG----------GGAGGCACTTGAAGCGacctctcaaaaactgaatatgtAGG-CGTCTCCGATTTCCTTGACGACCGGGAGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   43680 112 +   129353 -------------------------------------------------------------------------------------------------------tgtatttttt------attctagcaacaa--------aaaaa------g------ggtCCAAAACAATGCGCACGGGCAGGCAGGAAGGGAGAAGAG----TCCCT------CAAAAATGAAGG-cgtctccgttttccttgacgAC------GG
i caeJap4.Scaffold18206 I 37 I 562

a score=-3743.000000
s ce10.chrX             4481298 2 + 17718866 A-G
s cb4.chrX              9764585 2 + 21540570 GG-
i cb4.chrX              C 0 I 2958
s caeRem4.Crem_Contig0  1419370 1 -  4500979 T--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167520 1 +   386604 A--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2709628 1 +  4147112 A--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43792 562 +   129353 I

a score=1904.000000
s ce10.chrX             4481300 11 + 17718866 --CCACGTGAAAC
s caeRem4.Crem_Contig0  1419371 12 -  4500979 CCGCATGTAAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167521 11 +   386604 --CCTCGTGAAGC
i caeSp111.Scaffold622  C 0 I 138
s caePb3.Scfld02_0      2709629 11 +  4147112 --CCTCGTGAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=-113.000000
s ce10.chrX             4481311 19 + 17718866 TATTGGAAA-------TTTAGCTTCT
s caeRem4.Crem_Contig0  1419383 15 -  4500979 -------AA----TTGCTCAGCTTTT
i caeRem4.Crem_Contig0  C 0 I 144
s caePb3.Scfld02_0      2709640 26 +  4147112 ATcccgaaagtttttttttgacttct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   167532 138 +   386604 I

a score=-1450.000000
s ce10.chrX             4481330 164 + 17718866 AGAA-ATTTC------------AAAA-----------------TGGGTTAGTGAGTGACTGG--ACTTGTTAAATTGGTAGGGCTAGTAGGGG------------GCGAGTAAAGGGCGACTGGGGGCGACATCGGACAACATCTG----GGGGAGAGGTAGGAATAATG--AACACCCGCTAC----TTGTCCG--GTGTTGTCCCATATTGCCCGCAG
s caePb3.Scfld02_0      2709666 213 +  4147112 cgaatatttttttgttcccaggaaaagaaaaatatcttCTCTCTAGACTAATGAGGGTTTCGCAATTTGGTCGTTTTGCAGGAATTTTACAGGTCTTTGATATCAGAGAGAAGAGGCTAACAAG-------ATCAGAAAGAATATACAGTGTGGAAAGGCAAAGAACACGTCAAAAACCAATATTATGTTTtccatcactttttctcatatCGACCGTGA
i caePb3.Scfld02_0      C 0 I 175
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   167532 138 +   386604 I
e caeRem4.Crem_Contig0  1419398 144 -  4500979 I

a score=0.000000
s ce10.chrX             4481494 100 + 17718866 TCGCCTACTACATGTACGCTCTTTTCCAGTTGTCCCTTACTCTTTGTTGTTTCAGGCCAGTATCTGACTTTACTCTCAGAAATATTGTTTTTAACCTGTA
e caePb3.Scfld02_0      2709879 175 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   167532 138 +   386604 I
e caeRem4.Crem_Contig0  1419398 144 -  4500979 I

a score=282.000000
s ce10.chrX             4481594 3 + 17718866 CAA
s caeRem4.Crem_Contig0  1419542 3 -  4500979 CAA
i caeRem4.Crem_Contig0  I 144 C 0
e caePb3.Scfld02_0      2709879 175 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   167532 138 +   386604 I

a score=1146.000000
s ce10.chrX             4481597 72 + 17718866 GAAACCAAAAAGACCGACTAGC------AAAATTACAATCAAAGAACGTCTTCAAAATTGATAAGATTGCAAGAATTC
s caeRem4.Crem_Contig0  1419545 61 -  4500979 GAGAACAAAAAG--TG----GT------AAA-----AATCAAAGAACACGTCAAGAATCAACGGGAATGTGCGATTTC
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622   167670 62 +   386604 GAGATCAAAACG--CGTACAGTTGGATAAAA-----AGTCAAAGAACACTGCAAATAATAA--------TGTGATtt-
i caeSp111.Scaffold622  I 138 C 0
e caePb3.Scfld02_0      2709879 175 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=2323.000000
s ce10.chrX             4481669 76 + 17718866 TCATCTATTTTT---CATTTTGACCGTGAGAATGAATG--TGTTTTGAAT----TACAACTACGCAAAATTCTTGAAAAAAAGAA--
s caeRem4.Crem_Contig0  1419617 79 -  4500979 tcatcaattttt---catatagACCGTGAGAGAGAACA--TGTGATGGATTGAATACAACTACACTAAG---TTGTGATAATAAGAA
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   167732 83 +   386604 ccatcaatttttgatcgtACCCACCGTGAGAAAGAACA--TGTGATGGATTGGATGAAACTACACaaagtt-ttctgataatGAGA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2710054 76 +  4147112 ACATTTAGTTTTAGGCTTGTGAATATTGATGAGCTACAATTTTGAC-AATTGGATT--------CTCAGTT-TTGTATTGTTGAAC-
i caePb3.Scfld02_0      I 175 I 124
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=1129.000000
s ce10.chrX             4481745 31 + 17718866 ------AATTGGCAGGAACAGATTTAAATATTGGAAA--
s caeRem4.Crem_Contig0  1419696 35 -  4500979 TGCAGCGTACAACGGGAAGagattaaa--tttgaaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167815 31 +   386604 ------AGGAAACAGGAAGAGATTGAA--ATTGAGGAGA
i caeSp111.Scaffold622  C 0 I 47
e caePb3.Scfld02_0      2710130 124 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=266.000000
s ce10.chrX             4481776 32 + 17718866 ATATGGCACAAAAAGACAAAAAAAAACGAG---------GT
s caeRem4.Crem_Contig0  1419731 41 -  4500979 gcgCAGccgaaaaaaactctgaaaaatgagcggAGTTCTGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2710130 124 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   167846 47 +   386604 I

a score=1209.000000
s ce10.chrX             4481808 31 + 17718866 --------------------------GAGAGGGAAATGGCATGACAACGGGACTTGG
s caeRem4.Crem_Contig0  1419772 57 -  4500979 AAGaggctttttttttcattcatccaacaaaaaaaacgacatGACAACGAGACTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167893 30 +   386604 --------------------------aaaagaaaaaaggcatGACAACAGAGTTCC-
i caeSp111.Scaffold622  I 47 C 0
e caePb3.Scfld02_0      2710130 124 +  4147112 I
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=-3579.000000
s ce10.chrX             4481839 76 + 17718866 CAGCGATGCTTTCCGGAAAGAACAAAGCTAGAAATGTCATCACTTCACAACG--AGTACAAAGTCCAA--------AAGT-----GTAGGT
s caeRem4.Crem_Contig0  1419829 80 -  4500979 ctacatttctca-aaaaaagagaaactctGGAAATCCCTTCATCCAACAAATG-AGAACACACCGAAA----CATTGTAA-----TCAGAt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   167923 82 +   386604 CAGCAGCTTTCAGGAGGACAACCAACTGGAAA---------TGTCAATGGAAATAGAACAAAGTACAAGAGAAACTATGTGTGTGTGGGAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2710254 78 +  4147112 CGAAAACACTCTCAAAATAGAGCAACTTAAAAAATCCacccttccaaaaaaagctgAACAAAGTCCAA--------ATGT-----TGGGGT
i caePb3.Scfld02_0      I 124 C 0
e caeJap4.Scaffold18206   43792 562 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=29958.000000
s ce10.chrX             4481915 156 + 17718866 GTACTGGAATTGCTGAAGAGGTGAAATGTATAGGTG---TACAATAAGAATATTGGGTTGCA--CC--CTATGCTCATTTTTCC-----AATTTTTCAAGTGACA------------CACAAATGGAAATGTATATTAACCGG---ATAT--GGAACGGACTGTCAAGCCGGATATTAGACTTCC
s caeRem4.Crem_Contig0  1419909 173 -  4500979 caaatgacattttttgggaGGCGGAACGATTAGGTAAATGGCACTAAGAAGATTACATCGCTCTCC--CCATGCTCgttgttcaaaaagaaagaattcaattaGAATTTGAAACGAATGCAAGAGGATATGGATAGTGACCGG---ATACGAGAGACAAACGCTTGATCAGGAAATTA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   168005 156 +   386604 AGACTGAAATCGTTGAAGAGGTGGAACAAATAggtaattttcaataagGAGATTGGGTTGca-----------cttatttttga-----agtgaaCTCAATAGAAAT--------AGTGCAAGAGGATACGGGTACTAGCAGA---ATAC--GAGACGGAACCCGGAGCAGGAAATTAGATTTCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2710332 158 +  4147112 GTAGTAGAATTTGCGGAGAGGTGCAACGAATAGGTAATTGGCAATAAGAAGATTGGGTTGCACTCc-----tgctcatttttga-----agagcaTTCAATGAGA------------TGCAAAAGGGTAGGGGTACTGACCGG---ATAT--GTGAGGAATGCTAGTGCAGGAAATTAGACTTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   44354 167 +   129353 GTACCGGAATGGCTGAAGAGGTGCGACGAATAGGTAATTGGAAACAAGAAGATTGGATTTCGCCCCTGCTTCTCCTATTTTTGC-----AAAAGCTT---TGAAAGCTATATACGGGTTCAAATGAAAGGGTGAACGAGCCGGGACGTCT--GAGA--------GCTGCCGGAAATTGGACTTCC
i caeJap4.Scaffold18206 I 562 I 549
e cb4.chrX              9764587 2958 + 21540570 I

a score=28.000000
s ce10.chrX             4482071 4 + 17718866 TATA
s caeSp111.Scaffold622   168161 4 +   386604 GACA
i caeSp111.Scaffold622  C 0 I 627
s caePb3.Scfld02_0      2710490 4 +  4147112 GTCA
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeRem4.Crem_Contig0  1420082 0 -  4500979 C

a score=-23483.000000
s ce10.chrX             4482075 456 + 17718866  
s caeRem4.Crem_Contig0  1420082 333 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2710508 436 +  4147112  
i caePb3.Scfld02_0      I 14 I 53
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168165 627 +   386604 I

a score=-547.000000
s ce10.chrX             4482531 50 + 17718866 AATGTCTCAAAAAAAGAAAACGAAAAATTGAGCCAAATGACGTGTTTACT
s caeRem4.Crem_Contig0  1420415 23 -  4500979 ---------aagtgaAAATATTAGAAAGTGAG------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2710944 53 +  4147112 I
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168165 627 +   386604 I

a score=-4114.000000
s ce10.chrX             4482581 217 + 17718866 ATATTTCAATTTACAC---------------GTCAGACTACAGTATCTAG----AGTATTCAATTAACTGTC----TATGTTTTTTTTCTAGAATTTCCGACTGTATTATTTTGATTTTCTTTGTGAATGAACTTAGACGTAGTAAACTAGAAAAAAATAGTAAACTAGAGCACGCTATGAGGGACACAGTCCATTTCGTACAATATATGT----TATGT-TAAACATATATG-------------TTAAAAAATATG
s caeRem4.Crem_Contig0  1420438 214 -  4500979 -------AGCCTTCAt---------------gtcctacagtaatccccaagcaaaatttctaattgaatttc-cgatgtatttctct-------ttttcaactatatttttttgatcttcGA-AAGAATGAAATTAG-------AGTCATGAAGAGAAT------TCATGCCACTTTaaaaaaaCGATGGGTATTtagtaaaaaaatatttattatctTTGTATGTGGCCGTTATGTTAATGTagattaaaaaatatg
i caeRem4.Crem_Contig0  C 0 I 110
s caePb3.Scfld02_0      2710997 181 +  4147112 GTGATTCAATTTATATACAGTCTGGGAGGTCGACATACAGTAATCCCAGA----------CAATTGGATAACTCAATA----------------TTCTCAACTGTATTGTTTTGATCTACGA-------------------------CTTTGAGCGAAT------TTTTGCAAatgtcaaaaacaaacaattcaatGATTATCAAATATCT----TCTCT-TATATTGCCAcc-------------ttgaaaaacg--
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168165 627 +   386604 I

a score=-1765.000000
s ce10.chrX             4482798 130 + 17718866 TATATAAATTGTGCACCATGAAAAATA-ACTAGGAAAGTAATAGAACATCGCCGTGCTCATTAAATTTGAGCTCTAAAGAATGAAATAGGGCTTCTTG---------------CAAA--GGCTTCAAAGATTTTTAATTTTAAAAGCT
s caePb3.Scfld02_0      2711178 101 +  4147112 ---aaaaat------ccacaaaaaagaTATCAAGAGCGAA----------------------------GGGTTTCAAAG--CGA---AGGGTTTCTTTGATGTTATATTCCACCAAATCTGTTTCCAGAACTGCTGATGTC-----TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168165 627 +   386604 I
e caeRem4.Crem_Contig0  1420652 110 -  4500979 I

a score=-9491.000000
s ce10.chrX             4482928 140 + 17718866 -------------------------------ATCTTTG----AGCAATAACAAAATATACCAATTACAAATAAAAAACAAAACAACTTCTC------AAAAACCGGCGTGTTTTTAGGATG--CTCACTATCTTA----ATG-CACTACTAGTTG-TTTTATACAACGCGCTCAA-------------AACTCGCTGCAGAA---------
s caeRem4.Crem_Contig0  1420762 117 -  4500979 -------------------------------ATCCTTGACTAGACTCCA--AACATTCCTTAATTTC--------------------TCTC------AAAAGTCA-------TTCAGGCCGGTTTATTCAACTTACTTGGCA-TATAGCTCTATG---TGATATATTATTCTAAAT-------GA---ATTTGGCTG--------------
i caeRem4.Crem_Contig0  I 110 C 0
s caePb3.Scfld02_0      2711279 182 +  4147112 ACTACTGAACGGATAATTAAACATGTTTTTAACCCTTACCAAAATAATAACaatattttgttgtttc--------------------tttctttgaaaCGAACAA-------TTCGTAACG--CTCATCAATTTATTTGATGCTAAAACTGACAGGATTAATAAATTGGTCTCAATTCGTAAGGACTCATTTAGTGGGACAACCCGCATCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168165 627 +   386604 I

a score=591.000000
s ce10.chrX             4483068 6 + 17718866 AAAAAG
s caeRem4.Crem_Contig0  1420879 4 -  4500979 --AATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   168792 6 +   386604 AAGAGC
i caeSp111.Scaffold622  I 627 C 0
s caePb3.Scfld02_0      2711461 6 +  4147112 AAGAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   44521 549 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I

a score=41572.000000
s ce10.chrX             4483074 135 + 17718866 TGCTCGGATTTGTGGTGCGTGAAACCATAAAAATACACTTGCAGGTCG-----------------TTTTC----ATGAGAA---------GACTGCGAGACGAGAGAATAGGGGCAATTGAACGGCGTCAT-ACGAAAATCAGGTCAAAATTT-----GGTTGACTCTCAC
s caeRem4.Crem_Contig0  1420883 148 -  4500979 TTCAAGATTTTGTGGTGCATGAAACCATAAAACCGCAATTGGAGGTCGTC-----CAACC-----Tcctcaaa-agaagaaaaa------gattgacgtgaaagagaaaagaggcaattgaacggagaaaa-aagaaatttaggtcaaaaTTT-----GGTTGAGTCACAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   168798 149 +   386604 TACTCGAATTAGTGGTGCATGAAAgcataaaaacaaaattggaGGTCGTC---GACATTC-----TTTtccacaaaaagaaaaa-----cgattgaCAGAAACGG----AGAGGCAATTGAACGGAGAAACTAGGATATTTAGGTCAAAATTT-----GGTTGACTCACAC
i caeSp111.Scaffold622  C 0 I 561
s caePb3.Scfld02_0      2711467 156 +  4147112 CGCCTAAATTTGTGGTGCATGAAACCAT-AAAATAGAACTGGAGGTCGTC---TTCactcttcgtttttccac-aaaagaaaaa-----cgattgacatgaaaagaaaaagaggcaATTGAACGggagaaatgggaaatttaggtcaaaaatt-----ggttgagTCACAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   45070 160 +   129353 TGCCTAATTTTGTGGTGCGTGAAACCATAAAACGGTCAGAGTGAGCCATCGAGGTCACCCGA---TCCTCTTG-AAGAGGAAATGGAGGAGAGTAGGAGGTTAAAAAAGGGATGAAATTGAACGG-------AGAGTAATTAGGTCAAATTTTGACTAGGTCGAGTTACAC
i caeJap4.Scaffold18206 I 549 C 0
e cb4.chrX              9764587 2958 + 21540570 I

a score=360.000000
s ce10.chrX             4483209 25 + 17718866 AAAAGAAATTC-TTTACTGCATTG-----------TT
s caeRem4.Crem_Contig0  1421031 25 -  4500979 AGTAGG------TATCTAGTATTGTAGTA------TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2711623 36 +  4147112 AGTAGGGATTC-TATAcaatattttggaaagttgCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   45230 26 +   129353 AATAGGTATtcttattttgtattt-----------tt
i caeJap4.Scaffold18206 C 0 I 545
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168947 561 +   386604 I

a score=-21356.000000
s ce10.chrX             4483234 367 + 17718866 CC--AATGTTTTTCATGATACACTTTTGTCGAGACCTACGGTTTTGCAAAACTTTGATTTTTATTCAGAGAATTTTTTCTAGAGTTTGAAAAA------TGTT---TAAAAAAAG-----GTACCTAGaaaaataaaa---------tataattattcatataaatCGAAATAATAATAGTAGTTTAGAATTTGT-------TGACAAAAAGCCATTTTTAAAGTTTCTCAAAACTTTTTTAAATTATATGTTTTGGAAAAGGTTAATATCACGTTTTTCAAGTGTAACTAACAAAGGAAGTGTTTTAGATTTTTTTTCTGGAATATTCC---AAAAAAACCTATCATTTGAAAAATAACCGTTGCAATAGGTGACGGCAAAAG------TAGCTGTGGAAGAGAATT-------
s caeRem4.Crem_Contig0  1421056 203 -  4500979 CC--TAAGTT--------------TCT-------------------------------------ACAGGTTATTTGT----GAGTGTTGCAGG---CATTGTT---TGAGAATAGAAACTGGGCGCAGAG--------------TCGTCTAGCTATTT-------------------------------ATAACT-------TGAACACGATTTAT------GATTACGTAGA--TTTTCCAGTTTAGAGGTCACAACA---------------------------------GAGATAACGAAATACAGAT-------------TATCCC---GCAAAAA---------------------------------GCTGAGATaatcttttttggttttctgaacGTATT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2711659 371 +  4147112 CCATCAAGTTGACAGGAACACACGTCTGTT--TATTGATGGCTTTTATAAAC-TGGATTAAGTCATACGTAAGTTTT----GAGTTTGAGAGGTCACAATGCTCACTGAAAATGCAGATTATCTCCAGGGAATTAAAGATaatcttttcttgttttttgagcagA--GAAAAGTTGATACTA-CCCAACATACCTGAAGGAATGAGCATAgtctttttct-caaactttcaga--attttgaaattacagGTTACGCCAAAAAGAAGT-------------GGgcgaagaggaagatgaagaatgtCAGAT-------------gaaatcagaacaaaaattgaatgct-----AGCTTCTGTTCTAAATGGTGTTGATGTGAGATTTGATGGTTGCCAAAGGGTACAGATAATT
i caePb3.Scfld02_0      C 0 I 268
e caeJap4.Scaffold18206   45256 545 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168947 561 +   386604 I

a score=-1305.000000
s ce10.chrX             4483601 227 + 17718866 TCGTACTAGGAGCAAACCTATCCAAG---ATCATTTCATTGCATTTTTCATTTCTTTCGAGGTTTGTATAAAATTATTCCAAAGATGTTTTTTGCGAATAAAAAAATGTTTTCAAGAGTATATAGGGGTAGAATTAGTTTCGATGCTTTTTGGTAAGTTATGTATTCATTTATTAAATTTTGTAAAGATCAGAAGATT----TTTCACCCAACTCAATACAACATTTTCCAGAT
s caeRem4.Crem_Contig0  1421259 173 -  4500979 TTG-----------AAGTTATGTAAATTTATCATGTGAACACATAATCAATTTactccgaaaatt-tgaaaaattctg--aaaattagtggTTATGAA-AACGAGAGGTTTGCTCGAG-ATGTA----------------TGATGGCTTATAGTcag-----------------aaagtctgaaaattgtagtAAATTGTAGTTTTATCTGATTTAACATAA------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2712030 268 +  4147112 I
e caeJap4.Scaffold18206   45256 545 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168947 561 +   386604 I

a score=-7794.000000
s ce10.chrX             4483828 220 + 17718866 TTTGCTTTCTGAATAAACTAATTTTCTAAAAAAGCTTCCAGAATGTCTAAAAACATTA--AAAGTCAGCAAAAACAGCTTGCTAGAAAAAAGTTAGGATAAAGATAATTGTTGTGGGAAAAAATTTAACCACCATGAATTTGAAAAAA----TGAAAAAAAAATTGAAAAAATGAAATGCAATAGATTATGAAACTTTGAGTTTTGTTGTTTTTTAACGAACTAT----G
s caeRem4.Crem_Contig0  1421432 127 -  4500979 --------------GAACT--atagataagaa----------------aaaaactatatgGAACATGTTGTGGTCA----------AGAATGTTGA------------------------------------------TTGGGAAACA----AAGAgggaagaatagaaaaa------gaagtaacTTAT-----TTTAAG----ATTAAACTGTGAAAAACTTTCGATG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2712298 188 +  4147112 TTGACCTTTTGTAGAAGCT--TTTGGGACGAAAGCTTCGAGAA-GCTTAAAAGGAATATCGAAATTACCACGTCCAGCTTTC----ATAACGCTGA----------ATTAATGGTCGTTCTAAT---ACCAGCCCGTCTTTGAAaccacgtgagaaaaaaagaatggaataaC-AGTTGGAGGAAATTAT----------------ACATACTTTAaataacttt-----
i caePb3.Scfld02_0      I 268 C 0
e caeJap4.Scaffold18206   45256 545 +   129353 I
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168947 561 +   386604 I

a score=-2734.000000
s ce10.chrX             4484048 25 + 17718866 TCATGCATT-TTTTGAAAATGATAAT-
s caeRem4.Crem_Contig0  1421559 20 -  4500979 ATATGTATCATCTTCAGAAT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2712486 14 +  4147112 ----------tcttcaaaatg--aat-
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18206   45801 24 +   129353 ---TCaatcattttgcaaaaaaaaaaa
i caeJap4.Scaffold18206 I 545 C 0
e cb4.chrX              9764587 2958 + 21540570 I
e caeSp111.Scaffold622   168947 561 +   386604 I

a score=1895.000000
s ce10.chrX             4484073 11 + 17718866 CGAA---AAACAAA
s caeRem4.Crem_Contig0  1421579 10 -  4500979 -GGG---tagcaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   169508 11 +   386604 cgga---aatcaaa
i caeSp111.Scaffold622  I 561 C 0
s caePb3.Scfld02_0      2712506 14 +  4147112 AGGATAGAACCAAA
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18206   45825  9 +   129353 --aa---caacaaa
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9764587 2958 + 21540570 I

a score=187680.000000
s ce10.chrX             4484084 448 + 17718866  
s cb4.chrX              9767545 447 + 21540570  
i cb4.chrX              I 2958 C 0
s caeRem4.Crem_Contig0  1421590 427 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   169519 434 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2712520 423 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   45834 513 +   129353  
i caeJap4.Scaffold18206 C 0 I 1074

a score=38796.000000
s ce10.chrX             4484532  91 + 17718866 AA-----------TTTAACA----GAAC----TTTCAAGCTGTCTATGGAACTAGTTCACACAGATTT------------TGTTTGCTAAACTTCAC-------GTTAATAGATATAAACAACTTTAAA
s cb4.chrX              9767992 111 + 21540570 AG-------GGAgatgaaaaaacgaaaa----cttcAAGTA------GG-ACTAGTTCACAAGGTTTTTTCTCTTGGCtgtatttgccaattttcattGATTGAACTGATAGATACAAGCTATTTTTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1422017 104 -  4500979 AG---TGGAggagatgaaaa----aaaa----cttcaagtaGTTGGCGG-ACTAGTTCACacggtttttt----------tgtttgccA---TTCATTGATTGAACTGATAGATACAAGGTATCTTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   169953 113 +   386604 AG-AGCGGgagatttggaaa----aagaaaattttcaagtagTTGGCGG-ACTAGTTCAcacggttttttttc-------tatttgccA---TTCATTGATTGAACTGATAGATACAAACTATATTTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2712943 110 +  4147112 AGCGGCGaagtatatgaaaa----aaaa----cgtcaaGTAGTTGGTGG-ACTAGTTCACacggttttttctt-------tgtttgccA---TTCATTGATTGAACTGATAGATACAAGCTATCTTAAA
i caePb3.Scfld02_0      C 0 I 988
e caeJap4.Scaffold18206   46347 1074 +   129353 I

a score=75.000000
s ce10.chrX             4484623 3 + 17718866 TTA
s cb4.chrX              9768103 3 + 21540570 TTA
i cb4.chrX              C 0 I 1899
s caeRem4.Crem_Contig0  1422121 2 -  4500979 TT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   170066 3 +   386604 TTA
i caeSp111.Scaffold622  C 0 I 2
e caePb3.Scfld02_0      2713053 988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I

a score=1638.000000
s ce10.chrX             4484626 33 + 17718866 AAACATTGTTGAATTTAATAGGTAAGAAAAAAA-
s caeRem4.Crem_Contig0  1422123 32 -  4500979 -ATCGTAGTCTAGactgaaagtttaaaaaaaga-
i caeRem4.Crem_Contig0  C 0 I 863
s caeSp111.Scaffold622   170071 34 +   386604 AAAAGGCGTCTAGAcgaaaagttgaagaaaaaag
i caeSp111.Scaffold622  I 2 C 0
e caePb3.Scfld02_0      2713053 988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I

a score=333.000000
s ce10.chrX             4484659 16 + 17718866 TATCATAGATTTTAAT
s caeSp111.Scaffold622   170105 16 +   386604 tgagatgAATCTGAAT
i caeSp111.Scaffold622  C 0 I 737
e caePb3.Scfld02_0      2713053 988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I
e caeRem4.Crem_Contig0  1422155 863 -  4500979 I

a score=0.000000
s ce10.chrX             4484675 1535 + 17718866  
e caePb3.Scfld02_0      2713053  988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I
e caeSp111.Scaffold622   170121  737 +   386604 I
e caeRem4.Crem_Contig0  1422155  863 -  4500979 I

a score=500.000000
s ce10.chrX             4486210 21 + 17718866 AATCTATTTTTATGAGAGCAT
s caeRem4.Crem_Contig0  1423018 21 -  4500979 AATGTACTTTTAGAAGAAATA
i caeRem4.Crem_Contig0  I 863 C 0
e caePb3.Scfld02_0      2713053 988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I
e caeSp111.Scaffold622   170121 737 +   386604 I

a score=696.000000
s ce10.chrX             4486231 4 + 17718866 ATCC
s caeRem4.Crem_Contig0  1423039 4 -  4500979 ATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   170858 4 +   386604 ATGc
i caeSp111.Scaffold622  I 737 C 0
e caePb3.Scfld02_0      2713053 988 +  4147112 I
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I

a score=-214.000000
s ce10.chrX             4486235 26 + 17718866 ------AAAA-----AGAAACGTAAACAAAACACTTT
s caeRem4.Crem_Contig0  1423043 31 -  4500979 gaagtgaaaaattgcaaa-gtgtgaacatttt-----
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622   170862 24 +   386604 ------agaa-----aaatgtgtgaaCAT--CACAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714041 31 +  4147112 ------aaaagtaGCAAATGTGTGAACATCACACAAA
i caePb3.Scfld02_0      I 988 C 0
e caeJap4.Scaffold18206   46347 1074 +   129353 I
e cb4.chrX              9768106 1899 + 21540570 I

a score=7654.000000
s ce10.chrX             4486261 45 + 17718866 TTAAAACACCTGCTTGACCCCGAAATTATCTAAAAAAAAAAAAGG
s cb4.chrX              9770005 31 + 21540570 TTAAAACACCTGCGA---TT---AAT-TTCT-------TAAAAGG
i cb4.chrX              I 1899 C 0
s caeRem4.Crem_Contig0  1423079 22 -  4500979 ttaaaacACCTG----------------TCC-------TAAAAGG
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622   170886 35 +   386604 TTAAAACACCTGCAC---TCCGAAATGTTCC-------TAAAAGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714072 39 +  4147112 TTAAAACACCTGCCTCCGCCCGAAATGTTCC------TTAAAAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   46347 1074 +   129353 I

a score=96848.000000
s ce10.chrX             4486306 152 + 17718866 CGTCAGAAATATAAATCTTGTGT--CAAATTC-TCTAATGCGAACGACCGAGAAG-----------------------------------------AAGAGATGAA------GAGTAAAAGGAA----------AGGAAGAA--GTGTCACGGATCA----------ACAAAATGACCATTTGGATGACCTTTTGAGTGG-TTCCCGCAG--------------------GATG---AATACTTGGAT
s cb4.chrX              9770036 174 + 21540570 CGCGACAGGTATAAATCTTCGAAGCCTCATTCAATTAATGCGAACTAACGCAAGg-----------------------------------------atgagaagaa------aatggaatggAT----------AGATGGAAGTGTGTCTCGGATCATCGCCCGACAAGAAAATGACCAATTGAGTGACCTTTCGAGTGGTTTTGCGCCTA---GACAC-----------AAGG---GATACCTGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1423101 173 -  4500979 CGTCACAAGTATAAATCTTCAAG--CAAATTC-ATTAATGCGAACTAACGCACGG-----------------------------------------atgagaagaat---tgaaagagaaagaa----------gagtaGAA--GTGTCTCGGATCA----CCGACAAGAAAGTGACCAATTGAATGACCTTTCGAGTGG-TTTGCGCCGCTGTGTCGC-----------GAGGGAAGATACCTGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   170921 172 +   386604 CGTCACAAATATAAATCTCCAAG--CAAATTC-ATTAATGCGATCTAACGCAAgg-----------------------------------------atgagaaaga-------aagagaaagaa----------gaaaagat--gtGTTTCGGATCA----GCGACAAGAAAATGACCAATTGAGTGACCTTTTGAGTGG-TTTGCGCCGC---GTCGCACATCATAC--GAGG---GATACCTGGAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714111 176 +  4147112 CGTCACAAGTATAAATCTTCAAG--CAAATTC-ATTAATGCGAAATAACGCAAGG-----------------------------------------Atgagaagaaa---tcgaagagaaagaa----------aagaaa----gtgtcTTGGATCA----GCGACAAGAAAATGACCAATCGAGTGACCTTTCGAGTGG-TTTGCGCCGC---ATCTCACATCATACAGGGGG---GATACCTGGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   47421 217 +   129353 CGTCACAAATATAAATCTTCAGAGGCAAATCC-ATTAATGCGAACTAACGCACGGAACGAATGAGTGGCGAGTAACTTGGATGGATTCGAGGATGAACGagaaggaaaagtagaagaagaagaagacgaagaagaagaagaa--ctgTCTTAGATCA----GCGTCGATGAAATGATCAATCGAGTGACCTTTTGAGTGG-TTTGCGCCGC---ACT-------------GAGA---GA----TGGAT
i caeJap4.Scaffold18206 I 1074 I 2197

a score=54.000000
s ce10.chrX             4486458 1 + 17718866 T
s cb4.chrX              9770210 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1423274 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold622   171093 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714287 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=-5264.000000
s ce10.chrX             4486459 20 + 17718866 CACGGTTATAC--GTTATGGAG-
s cb4.chrX              9770211 10 + 21540570 -------------GCGGTAGGAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   171094 10 +   386604 --T----------TCCTCACAG-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714288 20 +  4147112 --TGGATACAACCGTTTCCGAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeRem4.Crem_Contig0  1423275 25 -  4500979 I

a score=-15637.000000
s ce10.chrX             4486479 137 + 17718866 ATTGGAAATCATAAAATCAGGTTTTTGTGT--------TGTGC-AAAATGTGGATATTCAAGTTGGTTTGCCGCG--------AAAAATAT---TAAATCCGATTTTGTAAACTACATCCAAACTTTAAAGG---TCGATGGA------ATCATTGACCACTTTTG
s cb4.chrX              9770221  77 + 21540570 ATTGGCAACAGTatgcta----------tt--------tttga-aaa------------------------------------------------aaaattaaatgcaaaaaaCTAAACCGA--TTTGAAGA---CCAACG-------------TAGCCgcg----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1423300 138 -  4500979 GTTGG-AACAGATCGCAAACGCAGTGGTTT--------CCTGC-AAAACAAACGTG------CAGGTATTCAAATGACTAGTGGAGAatcg---gaaaatcggatttaGAGAATGAAACCAACTTTTAAAGG---TTGAAGGT------ATCATTGACCGTTTTCA
i caeRem4.Crem_Contig0  I 25 I 34
s caeSp111.Scaffold622   171104 114 +   386604 -----------------------ATGGTTTCAAT----ATTAC-AGAATAAGTAAG--------GGGATTGAAAT--------GTTAATCACGCGGGAATCGGATTTATGAACAGCAgccgatttttgaaag---ttgcAGGAA-----ATCATTGATCATTTCGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714308 132 +  4147112 -----------------------TTGGTTTCAACTGAGGTTGCAAAAACAAGTATGTTCAAAtcagaatgcaaaa--------aaaaaaca---gaaaatcggATTTGTGAGCGGTTACCGacttttaaaagtttttacaTGAAAAGGTATCAATGACcactttga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=-6286.000000
s ce10.chrX             4486616 37 + 17718866 CTTTTTTTATTCTTTAAAATTAACATTTTGGTGGGTA---------------------
s cb4.chrX              9770298 36 + 21540570 --------attttttaaa--------------ggttaaaaattaaaaatcactGAACA
i cb4.chrX              C 0 I 20
s caeSp111.Scaffold622   171218 18 +   386604 ------TTGTTTTCTA-----------------GTCAGAtg-----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2714440 15 +  4147112 ------atattttcta-----------------gtCTG--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeRem4.Crem_Contig0  1423438 34 -  4500979 I

a score=-967.000000
s ce10.chrX             4486653 731 + 17718866  
s cb4.chrX              9770354 649 + 21540570  
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1423472 795 -  4500979  
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold622   171236 742 +   386604  
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2714455 828 +  4147112  
i caePb3.Scfld02_0      C 0 I 342
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=546.000000
s ce10.chrX             4487384 1 + 17718866 T
s cb4.chrX              9771003 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1424267 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   171981 1 +   386604 t
i caeSp111.Scaffold622  I 3 I 216
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=-660.000000
s ce10.chrX             4487385 8 + 17718866 TTTGAATT
s cb4.chrX              9771004 7 + 21540570 tttcttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1424268 8 -  4500979 tGTGGATT
i caeRem4.Crem_Contig0  C 0 I 131
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeSp111.Scaffold622   171982 216 +   386604 I

a score=885.000000
s ce10.chrX             4487393 115 + 17718866 TCATGGTTTAATGTTTGGTTGGTTTTGAAAC---AGTTTATTCTAATTTTCATATCTGTCTAGCAACTGGGAAACTTCTATAA-----------TTGCCAAAAATGATACTTTTTCAGAAATTTTTGAT
s cb4.chrX              9771011 118 + 21540570 tcaaaatttgaagtcgGAT--GCCTTGACATTTGAATTCATCTCA--TCTCAAATCt------caa-taaaaaacttttgtgatttttccgaCGTTGTTCAAGCTGATCTGTTTTCATGAATTGTTTAT
i cb4.chrX              C 0 I 275
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeSp111.Scaffold622   171982 216 +   386604 I
e caeRem4.Crem_Contig0  1424276 131 -  4500979 I

a score=0.000000
s ce10.chrX             4487508 794 + 17718866  
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e cb4.chrX              9771129 275 + 21540570 I
e caeSp111.Scaffold622   171982 216 +   386604 I
e caeRem4.Crem_Contig0  1424276 131 -  4500979 I

a score=123.000000
s ce10.chrX             4488302 20 + 17718866 TCCATTTAGAACACATCTTC
s cb4.chrX              9771404 18 + 21540570 TTCTTTTGGAACTCAAAT--
i cb4.chrX              I 275 C 0
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeSp111.Scaffold622   171982 216 +   386604 I
e caeRem4.Crem_Contig0  1424276 131 -  4500979 I

a score=29.000000
s ce10.chrX             4488322 1 + 17718866 A
s cb4.chrX              9771422 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1424407 1 -  4500979 A
i caeRem4.Crem_Contig0  I 131 C 0
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e caeSp111.Scaffold622   171982 216 +   386604 I

a score=4577.000000
s ce10.chrX             4488323 11 + 17718866 AAGTGAAATTG
s cb4.chrX              9771423 11 + 21540570 AGACGAAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1424408 11 -  4500979 AGGAGAAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172198 11 +   386604 aggCGAAATTG
i caeSp111.Scaffold622  I 216 C 0
e caePb3.Scfld02_0      2715283 342 +  4147112 I
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=76341.000000
s ce10.chrX             4488334 176 + 17718866 CAAAAACAGAAA-----TGACCATCTGGCTTTCA-GGAATGAAAATCCA------TGTAGTCGTCACTTAAACTTTCACG---GATACAGCCTTGAGAA-----AACGAAT------TGGAACGCC-------------AGCAACGACTCA-TTTTTTTTGGTGGTCAGTTGAA--AGGAAAT-----GGTGGAAGTGCAAATTTAATGAGATGATTCTATTC
s cb4.chrX              9771434 204 + 21540570 -GTAGCAAAAAG-----AGGCCATCTGGCTTTTTAGGA-TGGAAATCTAACCAGTTGTGCCCGTC----AACCTTTCACGGACGACGCAGCCTTGAGAA---AAAGCGATGAAGGAAAGGAACGCTTCCATACATGACGGGATAcgcctcatttttttttggtggtcAGTTGAAATGAGAAAC-----TGAGGAAGTGCCAATTTAAATAAAAGATTATATTC
i cb4.chrX              C 0 I 960
s caeRem4.Crem_Contig0  1424419 184 -  4500979 -GTAGC-AAAGG-----AGGCCATCTGGCTTCGT-GGA-TGGAAATTTAACCAGTTGTAGCCGTCACTTAACCTTTCACA---GACACAGCcttgagaaatgaaaacgatG------AGGAACGCC-------------GGCTACGCATCA-tttttttCGGTGGTCAGTTGAA--TGGAAAT-----GAAGGAAGTGCACATGTAATGAGAAGATTCTATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172209 185 +   386604 -ATGGTCAGAAA-----GGGCCATCTGGCTTTTA-GGA--AGAAATCTGGCCAGTCGGATTCTTCACTTAACCTTTCACG---GACACAGCCTTGAGAA-----ACCAAAG------AGGAACGCT-------------AGCTACgcctcattttttttcggtggtCAGTTGAA--TTGAAATGTGACGGAAGAAGTGCAAATTTAATGAGAAGATTCTTCTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2715625 179 +  4147112 ------CAGAAAAAGAGAGGCCATCTGGCTTTTA-GGATTGAGAACCCAACCAGTTGTAGCCGTCACTTAACCTTTCACG---GACATAGCCTTGAGAA--------AATG------AGGGACGAA-------------CGCCACGcctca-tttttttcggtgGTCAGTTGAA--ATGAAACG----GGAGGAAGTGCAAATTTAATGAGAAGATTCGATTC
i caePb3.Scfld02_0      I 342 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=-27482.000000
s ce10.chrX             4488510 218 + 17718866 AGGACGATGTCCAAAATGCTA--GGGTACTAAGGGT--ATATAGAGAAAA----GTGGGGAGG------GAAAAAACGAGAAATCTTAATTGACTAACAAGTCGATTCTGAGATGTT---GCGGAGAATTTGGCTTCTTTTA----AAATTGATTGAGTCATCG-------TTTTACTACAA-----AAAACATGCCAT--------------------------AGTGATTTAATTATTC------AGATTT-------TTTAATTTTTGA----------------------AAGTTGTTATGGAAACTG------------------------------------------------------------------------------------------------------------------------------------
s caeRem4.Crem_Contig0  1424603 365 -  4500979 ------ACGTTGATGGTTCTCCATTTTCTAGGAGGCTTGAAAAGAGGGaaactcaaaagaaa-------aaaaaaaggaaa----ttaatTGAGTAACAAGAAAAGtcgaaaactttttagaagaaactct-----tttttgctggaaattagccaaatttttgaa-----cttgagT--CACCCTCAgaacaaaattc-----------------gaaaatgttatTTATGTACTTGATTCCAGAAAGCTATTAATAA-AATAATGTGTCT--------AGCTAGTCAGACAGATTTTGTCTCAAGTATAA------TGACCGC------------------GGGAATGGGAGACAAATATGTTTAATTGAGTTCTATTTGGGAGAGCGTTGAGATTTTTGTCACAAATTATATAAAATATAAGATTTGGAtgaggaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172394 208 +   386604 -GAGCGACATCGACGgttctt--ttttcccgaagaagtgaatagaagaaa----ctagga---------gaaaaaaggaaa----ttaatTGAGTGACAAGTTGAGTCaatgaagtt---gaaaaaaaact-----cttttaTGGGGAATTAgcctaatttttgaactgatcTTCAGTGCAA-----AGAACTAAAATT------------------------------------------CGAGAAAGGTTT-------GTTGCTTTTTAT------------------------------TCaggaattt------------------------------------------------------------------------------------------------gtttttca----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2715804 383 +  4147112 -TG-----------GGTTCTC--TTTTCTTggagga--aaacagaaaaaa----ggaagaaatgggagggaaaaaaggaaa----ttaatTGAGCAAGAACTTAGGtcaaagaattg---gaaaaaactct---tctttttgtaggaaattagtcaaaatttcaaaattaacttGAGT--CA-----TGAActtaattttctttcatttatcGTTAGACTTTGTTATTGTCATG-TTGTCCTAAACtatgtttttctggaattgatTCTTATAAGGATTGGGCTAGACAATTAAA-GGTATCTCAAGTATTGCCAATATGACcgcagaaaatgaaaaagtgaggagaagaaaagttgaagCCGATGAATTG---TCGA---GAAAAAGAACTAAGA---ACgacatcaatttttcagaacat------------atgAAAAAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I
e cb4.chrX              9771638 960 + 21540570 I

a score=15437.000000
s ce10.chrX             4488728 150 + 17718866 ACAAACCTGTCCATAAGTGCAGTCCTTTTTGTTTTTAAGAGAGCATCCATCCTTTCAGTAGCTCTAATGACCACGCAGCTCCGTTCATAGCAATTATGATGTCTACAAA-------AAAGAT-----AACATCTTTA--------------------ATTAATTATTTGCA--------ATTATTAAA-AC
s cb4.chrX              9772598 135 + 21540570 ACAAACCTGTCCATAAGTGCAGCCTCTTCTATTTCGAAAGGATTATCCATTGTCTCGTAGTCACTGTCTTCCATGCATTTTTGCTCATAGCAATGGATGGATCTGGAAT------------------------------------------------ATTTGATATTTGAT-------TACTTGTTaa-ta
i cb4.chrX              I 960 C 0
s caeRem4.Crem_Contig0  1424968 161 -  4500979 acgaaccTGTACATAAGTGTAGCCCATTTTATTATTGGAGTACTATCCATTCTCTCGGAAGCATTGCTGACCATTCATTACTACCCATAGCAATTGTCGGCCCTGAAAC------------T-----AATACTTTCCAAAT----------AGAA--CTTTTATGTTTCATCTGGGTATATCCatcat-tg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172602 156 +   386604 actaaCCTGCCCATAAGTGCAACCGGTTTTATGTTGTGAGCATTATCCATTGTCCCGTGAACAAACTTGACCAAACGTCATTTATCATGGCAGTTGGTCAACCTGTAAC-----AATAACAT-----AATAATTATCTaaa----------agcag-attcaaaat-------------tttttcaat-tc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2716187 188 +  4147112 ACAAACCTGTCCATAAGTGCAATCGATCTTATTGTTTCTGTACTATCCATTTTCTTGTAAGCAAAGTTTGCAATCCATCACTTCTCATAGCAATTGAACTGaccgaaactgaaaaatgaaattggaaagtgaCTGTCAGAATGTTGCAAATAGTagcatttattattttca---gctagttttgcaatata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   47638 2197 +   129353 I

a score=97198.000000
s ce10.chrX             4488878 220 + 17718866 AAAAAAATCATGAAA-CGCAAACGAGGAAACCAAACAATAG-TAAGATTGAGGA-TTTCGATGAGAAGCTAAACCGAAAAAAAACTATGAGAA-ATACTGCGAAAAAAGCGGATAAAAAAGAGAAA--ACGAGG------CGGAACGTGGACTTGGGA-CCCGA-AGAAAGAGAGAAGACG---GCGACAGCAGTAGAG-------------------------AGAGGACAACAACTCGATTGAATTGCG---TCTTGCATTCT
s cb4.chrX              9772733 237 + 21540570 caagaaaaaataaaa-agc-ggcaaaaaaC-----CGGGGA--ATTCTTGAAGA-TTGCGTTGAGATGCT-------GGAAGAAGTCTCAAAAGAGAGCACATGAAAG-cggataaaaaaaaagaa-aacgagg-----gTGGAACGTGGACTTGGGACCCTGA-agacagagagacgacgaaaaaaacggggtaaaggagcaaaacgagaaagagagagagagagaggacaacaactagattgaatcgcg---TGTTGCATTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1425129 206 -  4500979 caaaaaaaaagaaaa---c-aacagagAA----------GA--AGCTTGGAAGATTTGTGTTGCGAAGCT-------AGAAAAAGTCTTCGAA-AGAGCGCAAAAATG-CggataaaaaaagaaaacgacggGG-AATAGTGGAACGTGGACTTGGGACCCGAAGAAACAGAGAGAAGACG------GCGGAGAGAAGGA------------------------AGAGGACAACAACTCGATTGAATTGCG---TCTTGCATTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172758 212 +   386604 aaaaacgtaagaaaa-atcaaagaaaaaaaacaaatgagag-TAAGCTCGGAGA-TTGCATtgaaaagct-------agaaaaactctgagaa-agagcacaaaaaaagcggataaaaaaagagaaaaagagggggaTAGTGGAACGTGGACTTGGGA-CCCGA-AGACCGAGAGAAGACG------------GAAACG-------------------------AGAGGACAACAACTCGATTGAATTGCG---TCTTGCATTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2716375 208 +  4147112 aaagaaataagaaaa-aat-aagaaaaaaaacacgagagaa--aagCCTGAAGA-TTGTGTTGAGAAGCT-------AGaaaaactctgagaa-agagcgcaaaaaagccggataaaaaaagaaaacgagggGAGAATAGTAGAACGTGGACTTGGGACCCCGA-AGACTgggggagaa---------------gaagg-------------------------agaggacAACAACTCGATTGAATTGCG---TCTTGCATTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   49835 203 +   129353 aaaaaaataacggacTAGC-TTCTGAGAAAGCATACATGAGCTAAGCTTGAAGA-TCGCGTTGAGAAGCT-------AGATGAA--ATGAAAAGAGAGCGAGGAAAAA-Cgggagaaaaaaaggaa--acgagGGAATAGTGGAACGTGGACTTGGGACCTCGA----------GAAGACG-------------TAAGA-------------------------AACGGACAACAACTCGATTCAATTGCTGTCTCTTGCTTTTT
i caeJap4.Scaffold18206 I 2197 I 2615

a score=3774.000000
s ce10.chrX             4489098 35 + 17718866 GAATAC-GTGACGCCGACG-AAAAAGTTGATGTTTTT---------
s cb4.chrX              9772970 37 + 21540570 GAATAC-TTGACATTG----TCTaa----agttttttgagatattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1425335 44 -  4500979 GAATAC-TTGACACTGGCGCTTTAGAC-CAAGTTTTTGCGGTTTTg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   172970 36 +   386604 GAATACTTTGACGCTAACG-TTAAGACGAAAGTTTTT---------
i caeSp111.Scaffold622  C 0 I 298
s caePb3.Scfld02_0      2716583 34 +  4147112 GAATAC-TTGACGCTGCCG-TTTAGCC-aaagttttt---------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18206   50038 2615 +   129353 I

a score=-3971.000000
s ce10.chrX             4489133 37 + 17718866 ------TCCAGAAACAAAACGCTCGAGATATCATGAGTGAGAG--
s cb4.chrX              9773007 32 + 21540570 t--tgaagaaaaaatg----gtaAGAGGTAATATGAGA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1425379 42 -  4500979 caatgagaaaaatataa-atgcaCGTGAGAAAATGAGCGCGAG--
i caeRem4.Crem_Contig0  C 0 I 343
s caePb3.Scfld02_0      2716624 31 +  4147112 ------ggcAGAAATGA---GCACGTgagaacttgaag-----aa
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e caeSp111.Scaffold622   173006 298 +   386604 I

a score=627.000000
s ce10.chrX             4489170 18 + 17718866 AGATTATGCTTTTGGTAT
s cb4.chrX              9773039 18 + 21540570 AAATCATCTGGTTTTTAt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2716655 18 +  4147112 aaagaagattcttGATAT
i caePb3.Scfld02_0      C 0 I 469
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e caeSp111.Scaffold622   173006 298 +   386604 I
e caeRem4.Crem_Contig0  1425421 343 -  4500979 I

a score=427.000000
s ce10.chrX             4489188 12 + 17718866 ACGAATTGAATA
s cb4.chrX              9773057 12 + 21540570 agaaatgaaata
i cb4.chrX              C 0 I 256
e caePb3.Scfld02_0      2716673 469 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e caeSp111.Scaffold622   173006 298 +   386604 I
e caeRem4.Crem_Contig0  1425421 343 -  4500979 I

a score=0.000000
s ce10.chrX             4489200 1088 + 17718866  
e caePb3.Scfld02_0      2716673  469 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069  256 + 21540570 I
e caeSp111.Scaffold622   173006  298 +   386604 I
e caeRem4.Crem_Contig0  1425421  343 -  4500979 I

a score=451.000000
s ce10.chrX             4490288 6 + 17718866 CTGGTC
s caeSp111.Scaffold622   173304 6 +   386604 ctgatC
i caeSp111.Scaffold622  I 298 C 0
e caePb3.Scfld02_0      2716673 469 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069 256 + 21540570 I
e caeRem4.Crem_Contig0  1425421 343 -  4500979 I

a score=29.000000
s ce10.chrX             4490294 1 + 17718866 T
s caeRem4.Crem_Contig0  1425764 1 -  4500979 t
i caeRem4.Crem_Contig0  I 343 C 0
s caeSp111.Scaffold622   173310 1 +   386604 C
i caeSp111.Scaffold622  C 0 I 1
e caePb3.Scfld02_0      2716673 469 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069 256 + 21540570 I

a score=12452.000000
s ce10.chrX             4490295 56 + 17718866 GAAATGTGAAAAATAGAATCGGTCTCTTCCATCTTTGATGAGCTTGTTTTTGTTTT
s caeRem4.Crem_Contig0  1425765 55 -  4500979 -aaaatgagaaaatagaatcCGTCGCAACGATTTCTAATGAACTTGTTTTCGCTTT
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold622   173312 53 +   386604 ATTACTTGAAAACTAAATTCCGTGTCGACCATTTCTAATGAActtgttttcgt---
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2717142 53 +  4147112 GGGATGTGGAAAATAGGATTCGTAGCTACCATATCTAAtgaacttgtttttgt---
i caePb3.Scfld02_0      I 469 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069 256 + 21540570 I

a score=1288.000000
s ce10.chrX             4490351 20 + 17718866 GATTTTCTA-CTAGAATTTTT
s caeSp111.Scaffold622   173365 18 +   386604 --tttccca-ggagcattttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717195 19 +  4147112 --tttcacacgAAGAATATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069 256 + 21540570 I
e caeRem4.Crem_Contig0  1425820 20 -  4500979 I

a score=2645.000000
s ce10.chrX             4490371 29 + 17718866 -----CATGAAACT-TGGTCTTCTCAATTCTTCAC----
s caeRem4.Crem_Contig0  1425840 30 -  4500979 -----CACCAAACTCTGGTCTCCTCAATTTTGGAC----
i caeRem4.Crem_Contig0  I 20 I 4
s caeSp111.Scaffold622   173383 31 +   386604 gaaaactccaGACTTTGGTct--------cttgaagaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717214 39 +  4147112 GAAGACACCAAACTTTGGTCTTCTCGAGCCTGGAGCAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773069 256 + 21540570 I

a score=141165.000000
s ce10.chrX             4490400 241 + 17718866 AAAAACTTGCAACCCATACACGTCCCGATGACAAGCTGACAGAAAAACGG-------AAAAAATGGTGATTGCTCTTGAAATACGAGCAGTGTTAGTCA--CGCGTGCCAAACTAGACTCTCTCACACTCTTTTCCTCT--CCAA----------TTTT-TTCTATTTCTACTGCTCTCCAA---AACGTATCTTTTAATTT-CGACATG-CTC------TAGCTCCAGAAAACAAAGTCAGAGATAGAGTAAACCAACGACCTGATTGCGAAA
s cb4.chrX              9773325 253 + 21540570 aaaaacttcctACCCATACATGTCCTAATGACAAGCTGACAGAAAAACGAAT-GGGAGAAAAATGGTGATTGCTCTTGAAATACGAGCAGTGTTAGTCAGGCGTGTGCCAAACTAGACTCTCTCG---CTTTTTTCTTGCTTCGTTTTGCCCCTCCTTCATTTTGTTTCCAATGCTCTCCAAAATAATGtatctttttattttcaacatG-CTCCCACTATGAGCCCAGAAAACA-AGT---------------CCAGTAACCTGATTGCGAAA
i cb4.chrX              I 256 I 66
s caeRem4.Crem_Contig0  1425874 236 -  4500979 GAAAATTTGCAATCCATACACGTCCTGATGACAAGCTGACAGAAAAACGA---GCAAGAAAAATGGTGATTGCTGTTGAAATACGAGCAGTGTTAGTCA--CGCGTGCCAAACTAgactctctcg---ttttttcctCG--TCGT----------CTTCATTCTGTTTCTATTCCTCTCCAA---AATGTATCTCTTAATTT---------CTCT-----GGAGTCCAGAAAACA-TGCCAGAGATAAAATAAACCAACAACCTGATTGCGAAA
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   173414 245 +   386604 aaaaacttgctGCCCATACACGTCCCGATGACAAGctgacagagaaaaaaacgagggGAAAAATGGTGATTGCTCTTGAAATACGAGCAGTGTTAGTCA--CGCGTGCCAAACTAgactctctc----ttttctcctct--catt----------tttcattcagtttgTGGCCCTCTCTAA---AACGTATCTTTTAATTT-CAACATG-CTC------CTACTTCAGAAAACAGAGTCAGAGATAGAGTAAACCAACAACCTGATTGCGAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717253 246 +  4147112 AAAAACTTGCTACCCATACACGTCCCGATGACAAGCTGACAGAAAAacgagagcaaaaaaaaatggtgattgCTCTTGAAATACGAGCAGTGTTAGTCA--CGCGTGCCAAACTagactctctc----ttttttcctct--cctt----------cttcattcAGTTTCTGGTGCTCTCTAA---AACGTATCTCTTAATTT-CAACATGCCTC------GGACTCCAGAAAACAAAGTCAGAGATAGAGTAAACCAACAACCTGATTGCGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I

a score=1902.000000
s ce10.chrX             4490641 39 + 17718866 TTGAAGCCTTATAGCGTCTAGAGGTTCACATAGATGATT--------------------------
s caeRem4.Crem_Contig0  1426110 64 -  4500979 TTCTGGTCTAATTCTATGGAAATGTTG-CATAGTTGATGTCATAGTCTCTAAAACTTTGACGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   173659 37 +   386604 TGCGGAGCTAAT--TGTGGAAATGTTGCCAGAGCTGATG--------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717499 36 +  4147112 TGCAAGTCTAAT--TGTGGAAATGTTG-CAAAGCTgatg--------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773578 66 + 21540570 I

a score=649.000000
s ce10.chrX             4490680  91 + 17718866 ------------GGAAGCTAGGCAACGCCAAAAAGTG--GAAAGAGTTGGAACTAAGA---ATTGCAAGAT---GTAAATAAGACAAATTGGACCAATTTTCTTTTGCTC-T
s cb4.chrX              9773644  73 + 21540570 ------------AGAAGTTTGGTG--GTCGGAAATC--------AGCAAGAGAGTTgc----------------gaaaataaaataaattggttcaattttctttctctct-
i cb4.chrX              I 66 I 3845
s caeRem4.Crem_Contig0  1426174  75 -  4500979 ------------GGAAATCAGAAA--ggaagaaactgaagaaggagccaaagaaagag----------------gaaaataatg-aaattggTTCAATTACATGTT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   173696 105 +   386604 ACAAAC--TTCTCAAACTCTGAT---GCCGGAAATcaaggagagaaaatgaaataaaaagcaTGGGACATGGTGGAAAACATAACAAATTGGTTCAATTTTCTCCTTCCC--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717535 104 +  4147112 tcaaacttttttcgagttcTGGTG--GTCGGGaatcaa-aagagagaaagagagaaag---atggagagagatgaaaaatgtaacaaattggttcaattttcttctctct--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   50038 2615 +   129353 I

a score=406.000000
s ce10.chrX             4490771 14 + 17718866 TTTTTCTC----TCTATA
s caeRem4.Crem_Contig0  1426249 14 -  4500979 TTTCTCCT----Tctcgg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   173801 10 +   386604 TCTCTCTA----TC----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2717639 18 +  4147112 tttttctcaacttctata
i caePb3.Scfld02_0      C 0 I 1991
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I

a score=273.000000
s ce10.chrX             4490785 1 + 17718866 T
s caeRem4.Crem_Contig0  1426263 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   173811 1 +   386604 T
i caeSp111.Scaffold622  C 0 I 39
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I

a score=210.000000
s ce10.chrX             4490786 57 + 17718866 TTTTCATATCCAATTTTTGAGCTACT-CATA---CATGATAACAAGT------ATCTGAAAATACGT
s caeRem4.Crem_Contig0  1426264 59 -  4500979 ttttc--------tttttgaataattgcatattctgtgagaaaaaatgtgaaaatgtgaaaacggat
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeSp111.Scaffold622   173812 39 +   386604 I

a score=304.000000
s ce10.chrX             4490843 35 + 17718866 TTTAATAAAACATCAA---AGTTCAGCGTAATGAATCA
s caeRem4.Crem_Contig0  1426323 36 -  4500979 --tcaaaaagagaaaagataaTTCATCAGAATGAATCA
i caeRem4.Crem_Contig0  C 0 I 894
s caeSp111.Scaffold622   173851 36 +   386604 cttcatgaaaaataaacttcaGTGAACCGAA--GATTA
i caeSp111.Scaffold622  I 39 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I

a score=621.000000
s ce10.chrX             4490878 29 + 17718866 -----GTCTAATTTTGAGTAAAGGATATAAACGT
s caeSp111.Scaffold622   173887 30 +   386604 TACATGACTAGCTATGAGT----GACACAAATGT
i caeSp111.Scaffold622  C 0 I 84
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=0.000000
s ce10.chrX             4490907 134 + 17718866 GAGCTGTTATATAGATGTTAAAAAGTCTTCCAGCTTGGTGCTTGGTCCACTGGTGTTTTGCGTTTGGTATGTCGCGGGTGAGCAGATGTAAAACACCTCTACTTCAAATACAGAAGTGTTACGTGCCTGTACTC
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeSp111.Scaffold622   173917  84 +   386604 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=-2722.000000
s ce10.chrX             4491041 577 + 17718866  
s caeSp111.Scaffold622   174001 458 +   386604  
i caeSp111.Scaffold622  I 84 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   50038 2615 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=-6142.000000
s ce10.chrX             4491618 243 + 17718866 TA---------TTAAAATCTTATTTCAAAACCGTCGCTGATGATCGTTCAGGTACCACA-------AATAGATTGTACAGAAAAAATTTGTGAATGAAACAATTATTAACTATTTTGATGTCGCCTTCT---TCTTCCGTTTATTTTTCAACACTCGAATAACCTAAAAATAAATTTTAAAGAAGTTTAAAAAATTCACAA-----AATAACGGAGTACCTTTTTAC-------TTTTCTTCGGTTTGTGTGTCATGTTGTTTTGCTGTGAAGA
s caeSp111.Scaffold622   174459 211 +   386604 TGCACGTcaatttaaagtttttt-----aatcGTCATCAATATCGATATAGTTG----A-------ACTGGTTTGGCCATGGAAAGT---TGAttg-------ttttagttttattGA-GTTGTCTTCTCGGTTTTTCTTCCGCTTTTTGGATTCCGGTTGATctagaaaatattcagattATTGGTTAGAAGCTtcaaaa---------------------cttac-------ttttttaGTGTTT-TGGTTCTTCTTGACCcgtt-------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   52653 229 +   129353 TA---------TAAATACATCGTTCATGAACCGTTATTGACGATCATTAAAATACCAAAATAACATAATAAATTGCAGTgtagaaattcagaaatg-------gaTCACTCATATC---CTCGCttttccgtttttcccactggttt----------aattttctgaaaattagttttttagttttct-----tttcACAAATTGAAATTAACAAAACCCAACCTACCCTGgagttttttgaaatct-tgttttttctcgacaa----------
i caeJap4.Scaffold18206 I 2615 I 31
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=121.000000
s ce10.chrX             4491861 34 + 17718866 GGTGGAATTTTGACAGTTATTGTTGTTGTC--GATC
s caeSp111.Scaffold622   174670 32 +   386604 ----taattttcttttctgtcgGAGTTGCCTGGATC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   52882 31 +   129353 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=75.000000
s ce10.chrX             4491895 106 + 17718866 GGTGTTAAGTTGTATCGGTTGTAACTGAAA----TTGAATATCTCTACTTGAAAACAAT-TATCGATTCAATTGCCATTTTTTGGATAATCTTTTTAAAAAATTATCTTTA
s caeSp111.Scaffold622   174702  62 +   386604 GGTGTGATGTTATATCTATTGTATCTGAAA---------------------AAGTcaatattttgattcaaccg-------------aat--------gaaatt-------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   52913  75 +   129353 GGTGTCATATTATATCTGGCGTATCTGAAaagttttccacattttcatttgaactgggcatttcgaataaa----------------aat--------a------------
i caeJap4.Scaffold18206 I 31 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e cb4.chrX              9773717 3845 + 21540570 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=-471.000000
s ce10.chrX             4492001 10 + 17718866 AAAAATTCCC
s cb4.chrX              9777562 10 + 21540570 AAAAATTCGC
i cb4.chrX              I 3845 I 5
s caeSp111.Scaffold622   174764  5 +   386604 -----ttctc
i caeSp111.Scaffold622  C 0 I 2
s caeJap4.Scaffold18206   52988  4 +   129353 -aaaa-----
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=0.000000
s ce10.chrX             4492011 2 + 17718866 AC
e caePb3.Scfld02_0      2717657 1991 +  4147112 I
e caeJap4.Scaffold18206   52992 0 +   129353 C
e cb4.chrX              9777572 5 + 21540570 I
e caeSp111.Scaffold622   174769 2 +   386604 I
e caeRem4.Crem_Contig0  1426359 894 -  4500979 I

a score=79366.000000
s ce10.chrX             4492013 129 + 17718866 AACTTACATTTCCGCAGCACACCCCGCTTCTAAATGCATATCTATATTAGCCAAATTGAAGGGCTTGAAGCATACTTCGCATAGATTGTACACTCTTTTTTCATTATTCTCCTTTTCAA---GCTGCCATTG
s cb4.chrX              9777577 117 + 21540570 CACTTACATTTCCATTCCACATCCAGCTGCCAAATGAACATCAATGTTATCCAGATTTACGGGCTTGAAGCACACCTCACACAAATCACAACCTTTTGGTTTG---------TTCTCAA------ACTGCTG
i cb4.chrX              I 5 I 3
s caeRem4.Crem_Contig0  1427253 120 -  4500979 AACTAACATTTCTGTGCCACATCCGGATTCCAAATGCATATCAATATTGGTTAAGTTGAACGGCCGGAAGCACACTTCACAGAGATTCGCATGTTTTggtttg---------gttttga---aacaCCATTG
i caeRem4.Crem_Contig0  I 894 I 60
s caeSp111.Scaffold622   174771 120 +   386604 aactcACATTTCAGCGGCACACCCAGCCTCCAAGTGCATATCAATATTAGCCAAGTTGAAGGGCTTGAAGCACACCTCGCAGAGGTTATTCTTCTTCGTGTTG---------TTTTCAC---AGTTCCATTG
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2719648 120 +  4147112 aactcacatttcagCAGCACAACCAGCCTCCAAGTGCATGTCAATATTAGCCAAGTTGAATGGCTTAAAGCAGACTTCGCACAGATTTTGCTTCTTCATATTG---------TTTTCGC---AATTCCATTG
i caePb3.Scfld02_0      I 1991 C 0
s caeJap4.Scaffold18206   52992 121 +   129353 --ctcacatttcaGCGGCGCACCCAGCCTCTAAATGCGTATCAATATTAGCCAAGCTGAATGGCTTGAAGCACACTTCGCACAGACTGCACGGTTTCGGCTTG---------TTTCTCGGCAAATACCATTT
i caeJap4.Scaffold18206 C 0 C 0

a score=3946.000000
s ce10.chrX             4492142 36 + 17718866 TTGAATATGAACATCT------GATAAAGCTGTGCCAGTCAT
s cb4.chrX              9777697 36 + 21540570 ------GCCAGAACAAACCAATGACGACGTCATAGCAGTCAT
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold622   174891 36 +   386604 TTGTACGTGAGAATTG------GAAAGAGTGACACCGGTCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2719768 36 +  4147112 TTGTACGTGAGAATTG------GTAAAAGTTACACCAACCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   53113 36 +   129353 TTGAAATATAGGTTTC------AGAGCAATGGTACCGGTCAT
i caeJap4.Scaffold18206 C 0 I 6770
e caeRem4.Crem_Contig0  1427373 60 -  4500979 I

a score=-6580.000000
s ce10.chrX             4492178 21 + 17718866 TTC-----------------TGGAATT---------CATAAACCGAC-
s cb4.chrX              9777733 48 + 21540570 CGATAATTCCCAAGCTTCTGTAAATTTGTAGCATTGGTTGGAACAAAT
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold622   174927 29 +   386604 TCAGA---------------TGGAATTCTGGAA---Gttaaaaagaa-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2719804 24 +  4147112 CACCc---------------tgaaattgcag--------aaaatgaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e caeRem4.Crem_Contig0  1427373 60 -  4500979 I

a score=-9696.000000
s ce10.chrX             4492199 202 + 17718866 TATATTTTTAAAAAACCTGAAGAGAAAGTGACAAAAGGTATA---------TTTCAAATAAGAAA----------------------------TCT-GA---AGATAAATGA---TGAAAAGAATGATAGAGAACGAGGAACACCACAATTAAAAAACAATCGTGACAAAAAAAGTGCAGGAC---ATTGAACGTTCATAGAGGCGAA---ATCAAAGTACAAAAGCG------------------AATGGTAAAGTAAACATGCACTTT
s cb4.chrX              9777787 194 + 21540570 TAGGATTTGGA-----AGGCAAAgttaaactttgaatttcaa---------tgtGGGTTGAAAG-------------------------TGGCTCTAGA---AGGGAATGAG---CACT-TGAGTGACAG-GACA----------GACGT---CAAACA-----CACaggtaaa----aaaaa---actgaacgtTCACAACGATAAA---ATCAGAGTACGAAAAAGAAtcggagagaaagaga-gtagGTCGAGCAAATATGCACTTT
i cb4.chrX              I 6 I 1539
s caeRem4.Crem_Contig0  1427433 219 -  4500979 TATAATTTGGGTAAACAAGCAAAATTACAGATGTATGATCAAGAAGAACGTTACAGAATGACAGA--------------------TTTTTCGCTTT-GA---ACAGTGGCAG---CAGTAAGAATGACAGAGAAC----------AATATGAgcaaaga-----aagaaggaaagtgCAAAAA---AGTGAACGTCTATAATGACAAA---TTGAGAGTACGAAAAGA---CGGAATGTGAGCCATGTGGTGGGAGCAAACATGCACTTT
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold622   174956 231 +   386604 -----t---gagaaatagTGAAAGAAGAGCATTGAATACAAA---------TATAAAAGACAAGGAAGCAAATTCGTTTGACGTTTTTACTGCTTTGAGTCAAGGAAGATAAAGGAAACGAAAACGAGAGGGAACACGAG-----ATTATCAGG--GGA-----GTagaatagaatg-aaaaacggaCTGGAGAACATTATAGATGAA---ATCAAAGtacagaaaaa-----ggaaaagagtcG-TGGAATCGAGCAAACATGCACTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2719828 216 +  4147112 -----tttcaaaaagctgagaaaataaaacatggaATACAAA---------TTCAAGAAACCAGGAAGAAAGGTCTTTTGTCG--TTTGACGTTTTaag---aaacagataa---aaatg--aatgacagTTATCATGGG-----AAAGTCAGGAAGAA-----GACAGACAAAGCG-TAAAA---ACTGAACATTGTTATAGATAAAAGTATCAAAGTATGGAATAA-----AAAA-----------GGGTAAAGAAACTATGCACTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I

a score=4411.000000
s ce10.chrX             4492401 10 + 17718866 CTCACTCGTT
s caeRem4.Crem_Contig0  1427652 10 -  4500979 CTCATTCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   175187 10 +   386604 CTCACTCgtt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2720044 10 +  4147112 CTCAGTTGTT
i caePb3.Scfld02_0      C 0 I 258
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I

a score=225.000000
s ce10.chrX             4492411 31 + 17718866 AATAATATGGCCACAGTTTACTCTATTCAAA-----
s caeRem4.Crem_Contig0  1427662 27 -  4500979 ----ACTATTCCAAAG-----TTCATTCAAATTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   175197 29 +   386604 tataactttttctcaG--TACTTCATTCAAA-----
i caeSp111.Scaffold622  C 0 I 165
e caePb3.Scfld02_0      2720054 258 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I

a score=313.000000
s ce10.chrX             4492442 22 + 17718866 TAGCCGTGAAAATTTTTGAATA
s caeRem4.Crem_Contig0  1427689 21 -  4500979 TGAACG-GAAAGAGATTGAATA
i caeRem4.Crem_Contig0  C 0 I 180
e caePb3.Scfld02_0      2720054 258 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175226 165 +   386604 I

a score=0.000000
s ce10.chrX             4492464 961 + 17718866  
e caePb3.Scfld02_0      2720054 258 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175226 165 +   386604 I
e caeRem4.Crem_Contig0  1427710 180 -  4500979 I

a score=348.000000
s ce10.chrX             4493425 43 + 17718866 TCAATTCTATATCTATAAT--TCAAATGATCATT-----TTCACAAGCAT
s caeSp111.Scaffold622   175391 48 +   386604 TTAGTCTTGTATCTGTCATGGCGAAATGATTATTGAACATTCAGAG--AG
i caeSp111.Scaffold622  I 165 C 0
e caePb3.Scfld02_0      2720054 258 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeRem4.Crem_Contig0  1427710 180 -  4500979 I

a score=2086.000000
s ce10.chrX             4493468 9 + 17718866 CAGCTCTAA
s caeRem4.Crem_Contig0  1427890 9 -  4500979 CAGCTCTAG
i caeRem4.Crem_Contig0  I 180 C 0
s caeSp111.Scaffold622   175439 9 +   386604 CGGCTCTAG
i caeSp111.Scaffold622  C 0 I 8
e caePb3.Scfld02_0      2720054 258 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I

a score=49413.000000
s ce10.chrX             4493477 215 + 17718866 -------AGCGAGCGGCATGTGTGTGA-GGGCACTTGACAAAGAAACGAACAAGAAGAAAAGGGAATGAATGTATTCGTGCC-TTTGTCACAGGAAATATGATTAGGAACACGAATACACACAAAACTATTTGTA-ATCGAACAAAAATTTTGTTATGCACGA-CACAATC-TTTTGGCTAATCTTCTTT-----GAATGAATTAAGAATTGCTAGTGAGAACCGCTGAAAA--
s caeRem4.Crem_Contig0  1427899 218 -  4500979 AGCGTTCAATGAACGGC--TTATGGGA-GGGTACTTGACAAAGCTACGAT--AGAAACGAAACGAATAAATGTCTTCGGGTCTTTTGTCACACCCAATATGATTACGAACACACACAGACATAAAACCATTTAT--AATACAACTAAATTTTGTTCAGCACGACCACAATC-TTGCGACTAATCTGCTTT-----GAATgaatcaaaaa-tgcaaatcGGAACtaacaaaaa--
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold622   175456 216 +   386604 -------CATGGACGGC--TTATGTGAGGGGTACTTGACAAAGACACGat--tggaaagaaatgaatgcaTGTATTGGGTTC-TTTGTCACATCCAATGTGATTAGGAACACACAT--ACATAAAACCATTTATATAATAGAACAGAATTCTATTCAGTCTGACCGAAGCC---TCATTTAATCTGCTTTTCacaaatcaaatcaaaaa-tgctaAACGGAACTGGTGAATGGA
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0      2720312 207 +  4147112 -------AATGAACGGC--GTATGTGA-GGGTACTTGACAAAGACACgat-------agaaatgaatgaatttgttGGAGTC-TTTGTGACACCCAATATGATTAGGAACGCACAT--ACATAAAACCATTTATA-ATGGAAACCAAATTCCGTTTTGCACGACCACAATCTTTTCGGTTAATCTGCTTT-----GAACgaatcaaaaa-tgcaaaacggAACTGATGAGAAGA
i caePb3.Scfld02_0      I 258 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I

a score=2358.000000
s ce10.chrX             4493692 16 + 17718866 AGTTGTGACGTGCTTT
s caeSp111.Scaffold622   175672 16 +   386604 GATTTCGACGCACTTT
i caeSp111.Scaffold622  C 0 I 649
s caePb3.Scfld02_0      2720519 16 +  4147112 GATTTTGACGCATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeRem4.Crem_Contig0  1428117 28 -  4500979 I

a score=-388.000000
s ce10.chrX             4493708 29 + 17718866 T-----------TCAAGAAATAATTAGCGAAAATCATATA
s caePb3.Scfld02_0      2720535 37 +  4147112 TGGCCGGCATTGTCGGGAAAAAGT---AGGAAATAGTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175688 649 +   386604 I
e caeRem4.Crem_Contig0  1428117 28 -  4500979 I

a score=-37954.000000
s ce10.chrX             4493737 582 + 17718866  
s caeRem4.Crem_Contig0  1428145 423 -  4500979  
i caeRem4.Crem_Contig0  I 28 C 0
s caePb3.Scfld02_0      2720572 819 +  4147112  
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175688 649 +   386604 I

a score=-368.000000
s ce10.chrX             4494319 28 + 17718866 ACTAAAAATGTCGAACAAAAACAATTTT
s caeRem4.Crem_Contig0  1428568 21 -  4500979 ACATGAACTTT--AACAAAACTA-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2721391 31 +  4147112 I
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175688 649 +   386604 I

a score=-12732.000000
s ce10.chrX             4494347 182 + 17718866 TTCTGAGATGTACA----------AGCCCTAGTTTTAAAGTTTTCTCAAAACAGAACATAGTTAATGTTTACAA-----GACGTGTTTAGCTCACACTCCAGGCAAAGAATTTTGCCATGAAA----------------------------------CTTCTTTTG---GCTCAACCCGCTAAGCGTTCAAAATTCGATGTGTCAGTATATACTAAAAACTTAAAAATGGTTCA
s caeRem4.Crem_Contig0  1428589  74 -  4500979 --CTGAGGAGAATA---------------------------------------------AGCTGAGA---------------------A---CATTCTTGGGAccagaaatc---------------------------------------------atttttctg-----------aactaGACAT----------AGGTT------------CAGGACACA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2721422 218 +  4147112 TTTTGAGAACACCAATGACTAGAAAAGAGTGATtcta----tcaatcaaaaaattacatagCTGAAGTGGACAACAATGAACGCGTATA---TATTCTCGAAACTCATAACCTACCCACTCAGACTGAGATATACACTTGAATATGCTTTCTATATACTATTTCTGGGTATTCCAACAACCAGATATTC----TTTGAAGCTGCTGCTAGCCAACAAAACAGACGAATA-----
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I
e caeSp111.Scaffold622   175688 649 +   386604 I

a score=10113.000000
s ce10.chrX             4494529 53 + 17718866 GCATCCGCCCGACGACAAAACACTTTAGCCATGACGCCGTGTGGTGGTGGTAG
s caeRem4.Crem_Contig0  1428663 38 -  4500979 ACATCCGCTAGACGACAGAACGCTTTAGCCATGGAGAT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   176337 41 +   386604 gcATTTGCTTAACAACAAAACACTTAAGCCATAGCGATGAG------------
i caeSp111.Scaffold622  I 649 C 0
s caePb3.Scfld02_0      2721640 40 +  4147112 -CGTTCGCTTAACCACAAAACACTTAAGCCATGGCGACGAG------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e cb4.chrX              9777981 1539 + 21540570 I

a score=91314.000000
s ce10.chrX             4494582 163 + 17718866 GGGGGTCTCACA-ACGAAACTAC-------GAA-AACGC-TCAATGTTCCTGACGCACTGGTGTGTATTGCAAT-----G-----------AGAGTTCCGTATTACCC---------------------AG-ACTATGAGAGCGGGGAGTAAATAGGCGGCGG--AAAACT------GAGAAGATTG--AAGGTGCAATCCCTTTAAA-----------------TGGGGTTAACAGT
s cb4.chrX              9779520 226 + 21540570 GGCGGTCTCTCAGACAGAACTACTACTGCGAAA-AACGCTCAAATGTTCCTGACACACTGGTGTGTATTGCAATCGCGCGTTTTTCATTGGGGAGTTCCGTATTACCCAGACGTCCTGTGAAACGAGTGAG-----TGAGAGCGCGAAGTAAATAGGCGGACgcggaaaat------gagaagattGTATAGGTGCAATCCTTTTAAAGCAATGAAAAATGGGTTGGGGGTTAACAGT
i cb4.chrX              I 1539 C 0
s caeRem4.Crem_Contig0  1428701 182 -  4500979 GAGGGTCTCACA-ACGAAACTGC-------GAA-AACGC-AGAATGTTCCTGACGCACTGGTGTGTATTGCAAT-GCGCG-TTTTCACT--GGAGTTCCGTATTACCC---------------------AG-----TGAGA--GCGAAGTAAATAGGCGGCCG-AAAAACT------GAGAAGATTG--AAGGTGCAATCCTTTTAAAGTGATGAAAAA-----TGGGGGTTAACAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   176378 184 +   386604 AAGGGTCTCACA-ACGAAACTGC-------GAA--------AATTGTTCCTGACGCACTGGTGTGTATTGCAAT-GCGCG-TTTTCATT--GGAGTTCCGTATTACCC---------------------AG-TCTATGAGA--GAGGAGTAAATAGGCGATCG--AAAActgaggaggaggagattg--AAGGTGCAATCCGTTTCAATCTATCAAAAG------TGGGGTTAACAGT
i caeSp111.Scaffold622  C 0 I 48
s caePb3.Scfld02_0      2721680 186 +  4147112 ggaggtctcacc-acgaaactgc-------aaaaaacgC-GAAATGTTCCTGACGCACTGGTGTGTATTGCAAT-GCGCG-TTTTCATT--GGAGTTCCGTATTACCC---------------------AGACCTATGAGA--GTGGAGTAAATAGGCGGCGG--AAAACT------GAGAAGATTG--AAGGTGCAATCCTTTTAAAGCGATGAAAAA------GAGGGTTAACAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I

a score=-3985.000000
s ce10.chrX             4494745  52 + 17718866 GTTTGTTTGTTTATGGGGGGGGGGGGTCCGC---TTGAAGTGT------------------------------------------------------------------TGGAAAATTTGA-
s cb4.chrX              9779746 105 + 21540570 GTTTgttcgtg---------gcgagacccg------aAAGAAAA-TGAGGGGGGAAAGGAAGTAGCATGATGCATATATCATATCGGAAgctgaaatctttttttctgctggagaaaaagg-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1428883  44 -  4500979 GTTtgttcgtt---------gcgagacccat---tcaaataaaa-----------------------------------------------------------------tggataaaatga-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2721866  53 +  4147112 GTTTGTTCGTT---------GCAAGACCCACCCGTCAACGAGAAATGAG------------------------------------------------------------TGTAGAAGTGGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e caeSp111.Scaffold622   176562  48 +   386604 I

a score=-3002.000000
s ce10.chrX             4494797 25 + 17718866 AAG-----------CAAATTCTGGA------------AC---AACTCTTGA
s cb4.chrX              9779851 39 + 21540570 aagaaggagGAAGCTGAATAATTCA------------AGTTCGAATTCCGa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1428927 25 -  4500979 aag-----------tgaagcattga------------ga---aatttttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   176610 25 +   386604 AAA-----------CGAAGTTTGTA------------AT---ATCTCCTAA
i caeSp111.Scaffold622  I 48 I 103
s caePb3.Scfld02_0      2721919 35 +  4147112 --A-----------TGAATATTGCAATGAAATAACAGAT---ATTTCTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I

a score=-19590.000000
s ce10.chrX             4494822  70 + 17718866 ----------------------------------------------------------GGAATTTCTTAATTCCAATTGGAAATAT-------TAATAGCAAT---------TATTTTTAT----GATGTAAATCCATT--------------------------------------------------AGCAACGAT-----
s cb4.chrX              9779890 122 + 21540570 taatgttcttcttcttcttcttcgtcttctt--------------------------tgctttttctctctcttttcagaaaattt--gttcTTCGTATCATT--------CTGTCATCTT-----GTatatatcttct-------------------------------ttttttactcCGACa----caaaataat-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1428952 161 -  4500979 gaatatt----ttcttctcttcgaaCTAATTCTAAGAAAATCGT------AAAATCgtagaatttttaaatgtctGCATGACCCTTCAGTTCGTATTATCATTTATGTTAGCTGTCCTTTc----aatttacatttttc-------------------caagaaaatcagtttttcattctgaca----aaaaatatt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2721954 153 +  4147112 --------------------------------------GATCGCTAGATGAAGAGTCTGAATTATTCAATTGCCTTCGGAAGTTCT--ATT--TCGtagaatt--------cctttttttttcaaaaattatgtcaCTCGGACTGGCATCACATGTTGGAATAGGATCATCTTTTTATATAGacaggagaaaaaagttcgaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I
e caeSp111.Scaffold622   176635 103 +   386604 I

a score=12847.000000
s ce10.chrX             4494892 123 + 17718866 AGTGATGTTGGCATT---------T------ATAAAAA----------------------GACACCGTTTAAAAA------TCAGAAAATGATATACAAA--------------GCC-----CTAGGCCGCTAC-TTTTGGCGAAATTCTGAAAAAGAAAGAATTTC----------GACAAACATGAA-----------------------TTGATCC
s cb4.chrX              9780012 175 + 21540570 -gtttttttggcATT---aaaaaagcagaatagaaaaatggaaaaatgaaaaaaaaaggggacaccgtttgaaaatcaatcaacaaaaaagataTACAAGGGTTTAGTGTATATGCA-----TATGCGTGCTAC-gtct---aaaattct-ggaattatagaatttt-------gtggaaaaagGCGAG-----------------------TGGGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1429113 138 -  4500979 cgaattgttggcatt---gaagaag------agaaaaa----------------------gacaccgtttggaga------aaagaaaatgatatatACA--------------GCC-----GGTAAGGCCTAC-aatt---aaaattct-gaaattgtggaatttt-------gacaaaagaagaaag-------aaatgttAAT------CAAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   176738 155 +   386604 AATGTTCTTGGCATtcaggaagaag------agaaaaa-----------------------acaccGTTTGAAAA------TCAGAGCATGATATACAAA--------------GCCCAAATAATGGACGCTAC-TCAT---AAAATTctgggaaagagagaatttgTGT----CAGGACaaaagggag-------aaaagaaTATAAGTGACTAATAC
i caeSp111.Scaffold622  I 103 C 0
s caePb3.Scfld02_0      2722107 163 +  4147112 aaTGTTGTTGgcatt---aaaatga------aaaagga-----------------------acacCGTTTGGAAT------CAAGAACATGATATACAAA--------------GCCTTGA-ATTAGGCACtacatgaa---aaaattctggggaaaggagaatttttgtggaaaagggaagaagagagggaaagtaaaagaacatttttgagtaaTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   53149 6770 +   129353 I

a score=114731.000000
s ce10.chrX             4495015 304 + 17718866 AAAAACACAGTCAG--------------ATGAAGGAAA------------------AAC---AGAACAAATATATAGAAAAAATTCGCATG-----------------------------GAAATGTTTAAGTCAAATAAAAAT--------------------------CAAGAAAAAATGAGTAC---TATAG------AAGGAGATCACAATT-------------------GGAATTCA--AAATG----GAGGCAAA---AAATAGAAAACTGCAATATACA--TATGGGA---GAATTGTGAGGGG-------------------------------------ATCTTTAGAAGAACATCCCACATCCGGTCGTCTGCTTCTCCGCTTTCCTCAGCATCGCAGTCTTGCACTTATGGGAGATTAGCACTGTTCCGGCCGAATTCACCCATGCTTCACCATCCCTGTA
s cb4.chrX              9780187 389 + 21540570 AGGGGAAGAGGGGg------aatatggaaaaaaggagG------------------GGGTTCGtgtcaaaa-----gaaaaaatatgaata----------aaggACAGACAACCAGAAGAACAGT--TACTCCGAATACAAAACGGTCGAATACTCGAACGT---------ACTAAA------------TATGT------AAAGAGATCTTCGAATAGTGGGTTTTGTGTGTTGGGAATTAGGAAAATG----AAGGCGAA----------GAACTGCAATTTACA--TGGCggaatagaacaaaaaaagaaagaaaaacacaaagtaaaagCAAGCAAGATGAACGGATTCTTAGAAGAACATTCCACATCCGCTTCTCTGCTTCTCCGCCTTTCTCAACATCGCAGTCTTGCACTTGTGTGAGATCTCCACGGTTCCGGCTGAGTTGACCCATGCCTCTCCGTCTCTGTA
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0  1429251 365 -  4500979 AAAGTAATGGGGGGTTTGTAGATAAgtaataaaagaaa------------------aga---acaacaaaga---tgaagaaatagaaatgagA-----ATAATGATGGGCAGGACGAAGAAGAGG--GAACAGAAACACCAAAAACTTGCGGTTTCAAATGTGGCTGGTCAATTAAAAATGAGTAGTACTATGC------AGAGAGATCACAAAA-------------------GGAATTAG--AAATG----GAGGCAAA---GAA-AGCGAACTGCAATATACAATTGGCGGAATAAAACTAAA------------------------------------------GTGTTTAGAAGAACATTCCGCATCCGGTACTCTGCTTCTCCGCTTTTCTCAGCATCGCAGTCTTGCACTTATGTGAGATCAAAACTGTTCCGGCTGAATTGACCCATGCTTCTCCGTCCCTGAA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   176893 383 +   386604 AAAATAGTAGGATT----CGTATGagaaacaggagaaacagaacagaaacggaaatgag---aaaagaagga---agaaaaggca-gaacaggaagaagatgaagaaggagaagaagaagaagaaaatggagagaaacaacaaa-acttgcggttttgaatgaagatggacaattaaaaatgagtAC---TTagcagagagaaagagatcac------------------------aaattgg--aaatggagtgagaagaa---gaa-agctAACTGCAATATACA--T----GAACAGAACAAGTATG---------------------------------------ATGTTTAGAAGAACATTCCACATCCGGTACTCTGTTTGTCCGCCTTTCTCAGCATCGCCGTCTTGCACTTGTGAGAGATCAAAACTGTTCCGGCCGAATTGACCCATGCCTCTCCGTCCCTACA
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2722270 329 +  4147112 AAAATAATAAGATT----TGTATGAGAAACAGAGGATa------------------gga---aaatgaagga---agaaaaaaaa-ggataaga--------------------------GAGAGGACAGGAGGAAATACCAAA-ACTTGCGGTTTTGAATGAAGATGaacaattaaaaatgagtAC---TATGC------AATGAGATCACGGTG-------------------GGAATTAG--AAATG----GAGGCGAA---GAA-AGCGAACTGCAATGTACA--T---------GAACGAGTAGG---------------------------------------CTGTTTAGAAGAACATTCCGCATCCGGTACTCTGCTTCTCCGCCTTTCTCAACATCGCAGTTTTGCACTTATGAGAGATCAACACTGTTCCGGCTGAATTGACCCATGCCTCTCCGTCCCTATA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18206   59919 297 +   129353 -aaaaactgggacg------gacggaaaggaaaggaaa------------------gga--aacgtgaaaga---aaaagaaaaa-------------------------------aaagaagacaatgaaaacaaaatcaaaaaac-----------------------------aaaatgagtAC---TAT--------GAGGAGATCACCAGA-------------------GGAATTCG--AAATG----GAAACAAGTGGAAA-AGGGAA----AATATACA--CACAGAAA--ATACCAGCA-----------------------------------------AGAATCAGAAAAACATTCCGCATCCAGTGTTCCGTTTTTCCACTTTCCGCAACATTGCAGTTTTGCACTTGTGCGAGATCAACACCGTTCCGGCCGATTGGACCCATGCTTCTCCATCTCTGTA
i caeJap4.Scaffold18206 I 6770 C 0

a score=-3176.000000
s ce10.chrX             4495319 38 + 17718866 --------------ATTATATCTCT-CTAATTTGTGTTATCCCCCAGAGGGTT--
s caeRem4.Crem_Contig0  1429618 37 -  4500979 --------------GGTATGCCCAATTTAGTTGATGTCA--tcaataagaaat--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   177278 35 +   386604 --------------GGTATGCCCAA-TTAATTTAGGCCA---CTTTAAGGATT--
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2722601 38 +  4147112 --------------GTTATGCGCAA-TTAATCTAGgtcgattcttcaaaaatt--
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18206   60216 51 +   129353 ATAAAATGAATTGGAATATGTACAT-AACAATGACATCG---TATTAAGAAGGCG
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9780576 36 + 21540570 I

a score=203031.000000
s ce10.chrX             4495357 202 + 17718866 TTCACTAACGATTGCATAGGGAACGAGTGATTCCCCTTGAACACAAGCTTCGCATGCTTGGCCTGCCCAATGCACAACGGGCTCGCCAGTCCGATCTGCATTTGAGCAATATGAAACGATGATGTCACCGCAAACACTTCAATCATCTCATCGTCGCATTCTTGTCGATGACTATCATTGTACGTGGCCCATGGCTGAAA------AT
s cb4.chrX              9780612 201 + 21540570 TTCACTTACGATTGCATTGGGAACGAGTGATTTCCCTTGAACACCAGCTTGGCGTGCTTGGCTTGTCCGATACACAATGGGCTGGCCAATCCAATTTGCATTTGAGCAATGTGGAAAGATGAGGTCACGGCAAACACCTCAATGGTCTCGTCGTCGCAGTCCTGGCGGTGGCTGTCGTTGTAAGTAGCCCATGGCTGAAA------T-
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0  1429655 207 -  4500979 tttactcaCGATTGCATTGGGAACGAATGATTCCCCTTGAACACCAATTTCGCGTGTTTTGCTTGTCCGATACATAACGGACTGGCGAGTCCAATCTGCATTTGAGCAATATGGAAGGATGATGTCACTGCGAACACTTCAATGGTCTCGTCGTCACATTCTTGTCTATGACTTGCATTGTATGTGGCCCATGGCTGAAAGTTTCTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   177313 201 +   386604 -TCACTCACGACTGCATTGGGAACGAATGATTTCCCTTGAATACTAGTTTCGCATGTTTTGCCTGCCCGATGCACAACGGACTGGCAAGACCAATCTGCATTTGAGCAATATGGAAAGATGATGTCACTGCAAACACTTCAATGGTTTCGTCGTCACATTCTTGTCGATGACTGTCATTGTATGTAGCCCATGGCTGAAA------TA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2722639 200 +  4147112 -t-gcttACGATTGCATTGGGAATGAGTGATTTCCCTTGAACACCAGCTTAGCATGCTTAGCTTGTCCAATGCACAATGGGCTAGCGAGCCCAATTTGCATCTGAGCAATGTGGAAAGATGATGTCACTGCAAACACTTCGAGAGTCTCGTCGTCGCATTCTTGTCGATGACTATCATTGTATGTAGCCCATGGCTGAAA------TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   60267 202 +   129353 ACCACTCACGATTGCATTGGAAACGAGTGGTTTCCCTTCAAGACCAATTTGGCGTGTTTTGCCTGGCCTATGCATAATGGGCTGGCCAGACCGATTTGCATTTGAGCAATGTGGAACGACGATGTCACCGCAAACACTTCAATAGTTTCGTCGTCGCAGTCCTGGCGATGACTGCCGTTGTATGTGGACCATGGCTAAAA------GT
i caeJap4.Scaffold18206 C 0 I 701

a score=-1183.000000
s ce10.chrX             4495559 36 + 17718866 AGACAAGAATTG--TAGAGAGATAACCGTCTCGTTG--------TT
s cb4.chrX              9780813 31 + 21540570 --------------TCTAATGATAAGAGTCAAGA-GTGGTACATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1429862 29 -  4500979 --------------TTTATAGATAACCATCTTGACGTCATA---TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   177514 38 +   386604 GTTTAGT---TG--ATGGAAGATAACCATCTTGACGTCATA---TT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2722839 40 +  4147112 GGGAAAG---TGAAATTCAAGATAACCATCTAAACGGCATA---TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   60469 701 +   129353 I

a score=184132.000000
s ce10.chrX             4495595 185 + 17718866 TACCCACCTTGACTCCAGCGCCCCAATATGGAATGTTGAGAAAGATGAGACCTTCGATATCGGGAAGGTTGACGTGGACGTCGTCTAAATATAGGTCGATTCTCTCGTTCAGACCCTTGCAAACTCTCTCAAAAACATCCTTGGTTCCAAATGTGAAGAAGAGGAATTTGTTGAGTAGCCTGAAA
s cb4.chrX              9780844 185 + 21540570 TTTCTACCTTTACACCGGCTCCCCAATATGGGATATTGAGGAAGATGAGCCCCTCAATGTCTGGAAGGTTGACGTGAACATCATCCAAGTAAAGCTCGATACGCTCGTTCAACCCCTTGCAGACGCGCTCGAAGACATCTTTGGTTCCGAAAGTGAAGAAAAGGAACTTGTTGAGTAGTCTGAAA
i cb4.chrX              C 0 I 953
s caeRem4.Crem_Contig0  1429891 185 -  4500979 GACATACCTTAACTCCCGCACCCCAATACGGAATGTTGAGAAAGATGAGACCTTCGATGTCAGGAAGGTTGATATGCACGTCGTCTAAATATAGGTCAATCCTTTCGTTCAGTCCTTTGCACACTCTTTCGAATACATCCTTGGTTCCAAATGTGAAGAAGAGGAATTTGTTGAGTAATCTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   177552 185 +   386604 TACTTACCTTGACTCCTGCGCCCCAGTATGGAATGTTGAGGAAGATGAGACCTTCGATATCGGGAAGGTTGATGTGCACGTCATCTAAATATAGGTCGATTCTCTCGTTCAATCCTTTGCAAACACGTTCAAACACGTCTTTTGTTCCGAATgtaaagaagagaaacttgTTGAGAAGTCTGCAA
i caeSp111.Scaffold622  C 0 I 101
s caePb3.Scfld02_0      2722879 185 +  4147112 TACTCACCTTGACTCCTGCGCCCCAGTATGGAATGTTGAGGAAGATGAGACCTTCGATATCGGGAAGGTTGATGTGAACGTCATCCAAATATAAGTCGATTCTCTCATTTAGACCTTTGCAAGCTCTTTCGAACACATCTCGGGTACCAAATGTGAAGAACAGGAATTTGTTGAGTAGTCTGAAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18206   61170 185 +   129353 TAATTACCTTAACTCCTGCACCCCAATACGGAATGTTGAGGAATATAAGACCTTCTATATCAGGAAGGTTAATGTGCACGTCATCCAAGTACAAATCGATTCGTTCGTTCAATCCCTTACAGACTCTCTCGAAAACATCCTTCGTGCCAAAAGTGAAGAAAAGAAACTTGTTGAGAAATCTGAAA
i caeJap4.Scaffold18206 I 701 C 0

a score=-3203.000000
s ce10.chrX             4495780 19 + 17718866 TAACAACGGTACAAAATTT
s caeRem4.Crem_Contig0  1430076  6 -  4500979 TTAGAA-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2723067 14 +  4147112 TCAGAAtag-----aattt
i caePb3.Scfld02_0      I 3 I 574
s caeJap4.Scaffold18206   61355 12 +   129353 TTAAAGGGTTat-------
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9781029 953 + 21540570 I
e caeSp111.Scaffold622   177737 101 +   386604 I

a score=-2585.000000
s ce10.chrX             4495799 56 + 17718866 GATCCCAAGATAGTCTGAAATG--TAACCGTTGCTCTATATTATCTTTTACCTAACTA
s caeRem4.Crem_Contig0  1430082 36 -  4500979 --TCC-------GTCAGAAACGAAtaaccttt-------------tttttccaagtta
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18206   61367 22 +   129353 --------------------tg--taatttttat-----------tttctcctaC---
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2723081 574 +  4147112 I
e cb4.chrX              9781029 953 + 21540570 I
e caeSp111.Scaffold622   177737 101 +   386604 I

a score=0.000000
s ce10.chrX             4495855 10 + 17718866 TCGGAAATTG
e caePb3.Scfld02_0      2723081 574 +  4147112 I
e caeJap4.Scaffold18206   61389  0 +   129353 C
e cb4.chrX              9781029 953 + 21540570 I
e caeSp111.Scaffold622   177737 101 +   386604 I
e caeRem4.Crem_Contig0  1430118  0 -  4500979 C

a score=-14607.000000
s ce10.chrX             4495865 127 + 17718866 TTGACAAGAAGT------------GTAGACATAGGTTGTGTTA-------AACATGCGTTAATCCTCTTATGACAGTTACAACT-TAGGTTTTGAACA-------------TTACCGCAAA-GCAGTAAAGCAGT--------------------TTAAAAATAGTGGTTT---------------------CTTAAAACAA
s caeSp111.Scaffold622   177838 200 +   386604 TTGGCAAAAATTAAGAACCGCCTggttaaaataaatt-tattattaataaaaaatctcgaaatcATCTTTCGA-AGTAACTGCTCTCTGTTCTGGACAGCTAGAAGTACGACTAGAGTAAATACGGTATATCGATAGCATCACGGGTTTTCAGTGTTGAAGAAAGTGAATCTACTGTATTTGTCATCATAAGCTTTAACTAT
i caeSp111.Scaffold622  I 101 C 0
s caeJap4.Scaffold18206   61389  16 +   129353 ----------------------------------------------------------------------------TAAATGCTCTCAATGT--------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2723081 574 +  4147112 I
e cb4.chrX              9781029 953 + 21540570 I
e caeRem4.Crem_Contig0  1430118   0 -  4500979 C

a score=910.000000
s ce10.chrX             4495992 1 + 17718866 A
s cb4.chrX              9781982 1 + 21540570 A
i cb4.chrX              I 953 C 0
s caeSp111.Scaffold622   178038 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2723655 1 +  4147112 A
i caePb3.Scfld02_0      I 574 C 0
s caeJap4.Scaffold18206   61405 1 +   129353 A
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1430118 0 -  4500979 C

a score=597264.000000
s ce10.chrX             4495993 815 + 17718866  
s cb4.chrX              9781983 832 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1430118 905 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   178039 831 +   386604  
i caeSp111.Scaffold622  C 0 I 29
s caePb3.Scfld02_0      2723656 841 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18206   61406 843 +   129353  
i caeJap4.Scaffold18206 C 0 C 0

a score=54.000000
s ce10.chrX             4496808 52 + 17718866 CTCAGAAATATAAAAAAattactcagctgcaaaat-----tttgcaaattttaaggt
s caeJap4.Scaffold18206   62249 35 +   129353 ----Gaagtacgaaaaa-------------aaaatgtgtgtttgca-----tatagt
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2724497 29 +  4147112 I
e cb4.chrX              9782815  7 + 21540570 I
e caeSp111.Scaffold622   178870 29 +   386604 I
e caeRem4.Crem_Contig0  1431023  0 -  4500979 C

a score=-18535.000000
s ce10.chrX             4496860 326 + 17718866 acccggtaatgaagcgacaagttttttcattgcgaaaatttttgcgtctttaatgagtacaaaattttccaaaaaaatctatttatttattaaaaactgtaataaaatcataaaaacagat----aaattcttgcaaggc-gttaaaaactatgaaaactttttgaaggcgcacaaatcatcgcatcccccaaaaaaatgtcgtgttgaccgggtaccgtaattatgacaaaaattgccacattctgggttataTCTATCTTCATTTCAAATTTC---TATTTTCTGATTTTTGTAAAGAATTTAAAATGCAATGTA-AATCTTATTATTAACAC
s caeRem4.Crem_Contig0  1431023  75 -  4500979 -------------------------------ACGGAGA----------TTTGATTAGCA--------TCTAAAACATCCTATTT---------------------------------------------------------GTTGGAAACTA------------------------------------------------------------------------------------ACCATTCTCTG-----------------------ATTTC---GATTTCCTGGCTT--------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18206   62284 199 +   129353 ----------------------gtccgtatttgaatgtttttttcgcatttggCGAACCCG------TCGCTAATGCTTTTTTC------TAGTAATTGCGCTGAGTTTTTACACTAATATTTCGTGACCTTTATAGCGctgccagaaatga--------------------------------------------------------------------------aaaaaaagtggccata----------------------------aatgcagaaatttccccctttttttctaaatcaaaaaaagcccgatatgattcaaatacgaacac
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2724497  29 +  4147112 I
e cb4.chrX              9782815   7 + 21540570 I
e caeSp111.Scaffold622   178870  29 +   386604 I

a score=-239.000000
s ce10.chrX             4497186 11 + 17718866 TTAATTCAGAA
s cb4.chrX              9782822 11 + 21540570 TTCATTCAAAA
i cb4.chrX              I 7 I 7
s caeJap4.Scaffold18206   62483  7 +   129353 tatatgc----
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2724497 29 +  4147112 I
e caeSp111.Scaffold622   178870 29 +   386604 I
e caeRem4.Crem_Contig0  1431098  0 -  4500979 C

a score=-716.000000
s ce10.chrX             4497197 3 + 17718866 AAA
s cb4.chrX              9782840 3 + 21540570 aat
i cb4.chrX              I 7 I 3
s caePb3.Scfld02_0      2724526 3 +  4147112 AAA
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold18206   62490 1 +   129353 -a-
i caeJap4.Scaffold18206 C 0 C 0
e caeSp111.Scaffold622   178870 29 +   386604 I
e caeRem4.Crem_Contig0  1431098 0 -  4500979 C

a score=101015.000000
s ce10.chrX             4497200 163 + 17718866 --------TCTAACTCACCATTCTCTGATTCCGGTTTCCTGGTCTTCTTGTGGTAACACAATATGGTGGTATGATAGTTCGTTTCAATCCACCAAAATCGCAATGTTTAGTGAATTTTGGTTTACACTTGGTGTGCACAACGCGCCAACACCTACAAAATA---------AGATCGATAA
s cb4.chrX              9782846 172 + 21540570 --------ttgtttttacCATTCTTTGATTTCGATTTCCTGGCTTCCTCGTAGTCACACAGTAGGGTGGGATGATTGTCCGTGCCAAGCGTCCGAAATCGCAGTGAAGTGTGAATTTAGGTTTACACTTAGTGTGCACAACACGCCAACACCTTCAAAAAGCGTACAGTTTGTTTGGTAA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1431098 135 -  4500979 ---------------------------------------------TCTGGTGGTCACACAGTACGGTGGGATGATAGTCCTCTGCAATCTTCCGAAATCGCAAGAAAGTGTGAATTTAGGTTTACACTTGGTGTGCACGACCCTCCAACACCTACAAAATCGTAATATTGAGAATGATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   178899 150 +   386604 --------TTGTGCTCACCATTCTCTGATTTCTGTTTCCTGGTTTTCTTGTGGACACACAATACGGTGGAATAATAGTCCTTTGCAATCTTCCAAAATCACAGTTCTGTATGAATTTTGGTTTACACCTCGTATGCACAACACGCCAAcacctgaaaa----------------------
i caeSp111.Scaffold622  I 29 C 0
s caePb3.Scfld02_0      2724529 163 +  4147112 --------ACTCTCTTACCATCCTTTGATTCCTGTTCCCCGGTTTTCTGGTGGTCACACAGTACGGTGGGATGATAGTCCGTCGCAATCTTCCAAAATCACAGTGTAATGTGAATTTCGGTTTACACTTGGTATGCACGACGCGCCAACAcctacaaaaac---------aattttataa
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18206   62491 175 +   129353 tccaccgcgtGTACTCACCATTCTCTGATTGCGGTTGCCTGGCTTCCGGGTTACAACGCAGTACGGCGGTATGATAGTTCTCTGAAGTCGGCCGAAATCGCAACGGTGGGTGAATTTAGGTTTACACCTTGTATGTACGACACGCCAGCACCTGGAATAGA-----AATtatattgttaa
i caeJap4.Scaffold18206 C 0 C 0

a score=300.000000
s ce10.chrX             4497363 19 + 17718866 TGATTTTTATTTTAATGAA
s caeSp111.Scaffold622   179049 12 +   386604 -------tatttgaatata
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   62666 19 +   129353 aaaaaattgttttggggAA
i caeJap4.Scaffold18206 C 0 I 523
e caePb3.Scfld02_0      2724692 22 +  4147112 I
e cb4.chrX              9783018  0 + 21540570 C
e caeRem4.Crem_Contig0  1431233  0 -  4500979 C

a score=-3929.000000
s ce10.chrX             4497382 21 + 17718866 GTGC-AATACTGGCTGGGTTAC------------
s cb4.chrX              9783018 28 + 21540570 -----GAAAC-GTGTAATTTTTAAAGTAAaaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1431233 19 -  4500979 -----AAAActatttcgttttc----------tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   179061 22 +   386604 gaacgaaaacaaaacaatttac------------
i caeSp111.Scaffold622  C 0 I 8
e caePb3.Scfld02_0      2724692 22 +  4147112 I
e caeJap4.Scaffold18206   62685 523 +   129353 I

a score=-3823.000000
s ce10.chrX             4497403 136 + 17718866 TTGTGTAACCTTACAA---------AAAGAGATCGGTT---------------------G-----GAAATTGAGCGACAGAAAAAGTA----AGT------------------------------AAATTGC-AAT-TTATCTTGATGA------GAGAACCTGGTTTCTACTCAAAAAAAAAGGTTGAACACTTT----TGG-AAACAAACTGAGAA
s cb4.chrX              9783046 160 + 21540570 tttagaaattcgaaatt--------gagaagagCGATT-------CTGTTGGGAGTGAAATGGACAAAAATAAGTTATTTC-----TA----agtgatttt-------ttcttgatcGGCTACAAAGATAGAGATTGTTATCTTGATGAGAAGGGAGGAACCTGGTTCCTAATT-----------TTGTGAGGCCA----AGAGAC------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1431252 164 -  4500979 ttgtgaaatttctaTAT--------AATAAAA---ATTGGCGAAACGGTTAATCGTGAAG-----AAAGTTGAATGATGACAAAAGTA----AGTTACTTTCAAGTATTTCTTGATC--------AGATAGA-ATCGTTATCTTGATGA-----GAGGAACCTGGTTCTTAATTGCAAATAG---TTGGGAGAATC----Aga-ac------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   179091 184 +   386604 TTGTgtaattttgcaaaaatagaagaagaagaacgatg---AGACCAGTCAGTCTCGAAA-----GACGAAGAAAGATGGTAAAA-TG----AGTTAAATTgaagtattttttgatc--------agaTAAG-ACCGTTATCTAAATG-------GGGAACCTGGTTTTCAATTAGAAACAGA--T--Agaagttcgaaaaat-acaaaaactgaaaa
i caeSp111.Scaffold622  I 8 I 159
s caePb3.Scfld02_0      2724714 178 +  4147112 ttgtgtaacatcgctaaaaatgaa-aaaaagaacgatg---TAGCCAGTC--------AA-----AATTGGGAAGGATGGTAAAA-AGAGGTAGTTACTTTGAAGTATTTCTTGATC--------AGATAAA-TTTGTTATCAAGATGA------GAGAACCAAGTTCCTAATTGCAAAACTA--TCGAGGAATTT----AGT-ACCGaaatagaaat
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18206   62685 523 +   129353 I

a score=-881.000000
s ce10.chrX             4497539 4 + 17718866 -CAAC
s cb4.chrX              9783206 4 + 21540570 -CAAC
i cb4.chrX              C 0 I 77
s caeRem4.Crem_Contig0  1431416 4 -  4500979 -aaat
i caeRem4.Crem_Contig0  C 0 I 18
s caePb3.Scfld02_0      2724892 4 +  4147112 gaag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   62685 523 +   129353 I
e caeSp111.Scaffold622   179275 159 +   386604 I

a score=-8718.000000
s ce10.chrX             4497543  73 + 17718866 CATATGCAGTTTCAGGTATTTTTTATTTCG----------AATGGCCGTAAATTT--------------------------------------------TCGTGATGATTGA-----TCGACTTT-----GAGTTCG-----------------------
s caeRem4.Crem_Contig0  1431438 131 -  4500979 -----------------agTGGTTACTTTG----------AACGCTCAAAAATCTAGACGGCGTAGGT--ACAGTAAGATAAGGAAAATCGGTGCGTAGCAGTAATCAGCAACATTGCccttttttgaacaattttttccattcctagtactgatgtttg
i caeRem4.Crem_Contig0  I 18 I 5
s caePb3.Scfld02_0      2724896 128 +  4147112 -----gaagtac--ggaattggtttttgtggttttttgataaaacttcaaagttt--GTGGTAGAAGTGGACAACACAACTTGAGGAATCTAAACAAAATAGTGATACCTAAAATAGTCAACTCTAAAGCAAGTTAA-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   62685 523 +   129353 I
e cb4.chrX              9783210  77 + 21540570 I
e caeSp111.Scaffold622   179275 159 +   386604 I

a score=684.000000
s ce10.chrX             4497616 3 + 17718866 AGT
s cb4.chrX              9783287 3 + 21540570 AAT
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig0  1431574 3 -  4500979 agt
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2725024 3 +  4147112 AGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   62685 523 +   129353 I
e caeSp111.Scaffold622   179275 159 +   386604 I

a score=26121.000000
s ce10.chrX             4497619 462 + 17718866  
s cb4.chrX              9783290 464 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1431577 483 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   179434 478 +   386604  
i caeSp111.Scaffold622  I 159 I 35
s caePb3.Scfld02_0      2725027 492 +  4147112  
i caePb3.Scfld02_0      C 0 I 23
e caeJap4.Scaffold18206   62685 523 +   129353 I

a score=-4709.000000
s ce10.chrX             4498081 15 + 17718866 TAG----AACTACAGTTGG-------------------
s cb4.chrX              9783754 23 + 21540570 -AA----GATGGCAGAAGGGAC----------AGTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1432060 37 -  4500979 -GATTCGGAAGGCAGATAGGACTAAATGGAATGGTTGA
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0      2725542 15 +  4147112 -GAT---GAATTCAGATGT-------------------
i caePb3.Scfld02_0      I 23 I 10
e caeJap4.Scaffold18206   62685 523 +   129353 I
e caeSp111.Scaffold622   179912 35 +   386604 I

a score=39075.000000
s ce10.chrX             4498096 170 + 17718866 -AGTGATGTATGCAAT--------------GACCAGTAG-----------AGATGGGGGAGAAA--AAAGTA---------AAACACCAGTCAGAGTTCAAACGATTAGAGCTAATCTATATGTTTCACCCACCCCGAC--CAGACCAGTTGTTTG--AT---AATAATTTTAAAACGCGAACATG--------------------------G----CCATG---TGATCGTAATCAGCA---GTTCGAG
s cb4.chrX              9783777 174 + 21540570 ATGTATTATTTGCAAT--------------GTCCGGT-------------AAACGCGGCATATCGGAAAATA----------GACACCAACGGGAGT--AAACGATTATAGCTAATCTGTATGTTTCACC--TCA-GGC--CATACTAGTTGGTttcgaaaagaagaa----aaaaagagaacacg--------------------------CCG--CCATGTGATGATTATAATCAGCAATGGTTTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1432100 179 -  4500979 ATGTTATATGTGTAAT--------------GTCCAGTAGCGAGTCGCGAAAAATGCGGCA------AAAATG---------CGATACCACGGAGAGTTCAAACGATTACAGCTAATCTGTATGTTTCACC--TCA--AC--CATACCAGTTAGTTT--gaactaaaaa----gaaaaaagaacgca--------------------------TTGA-ACATG---TGATCATAATCAGCAATTGTTTGAG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   179947 175 +   386604 -AGTGATGTATGGAat------------------attggaataa------aaaagagggaaaccgaaaaaaagataggGAGAG---------AAAGTTCAAACGATTACAACTAATC--TATGTTTCACC--TCTAGAC--TAGACCAGTTgtttt--aa---aagaa----gaaaaaagaacaca----------------------tGC-CCCATCCATG---TGATAATAATCAGCAACTATTGGAG
i caeSp111.Scaffold622  I 35 C 0
s caePb3.Scfld02_0      2725567 226 +  4147112 -GTTGATGTATGTAATAAATAGATGTGAATGTCCAGTggcacac------aaaaaaatgaaac---aaaatagaGCGAAAGAGACACCAGCCAGAGTTCAAACGATTACAGCTAATCTATATGTTTCACC--TCTCCACAACAGACCAGttgtttt--ga---aagaa----gaaaaaagaacacagcatctccctctctctcatttttactCCCATCCATG---TGATCATAATCAGCAACGATTCGAG
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18206   62685 523 +   129353 I

a score=157803.000000
s ce10.chrX             4498266 358 + 17718866 AATAAGGGGGAATA-----GAATAGGCGCAAAAAAG------AACAAGGCATAATGTACGAACA------AGGACAACAAAAGTAGGCTTGGCAAATAAACA-------CAA-ACTGATTTGAT--------------AACCAGAAG-----AGGGGGGCAAAA-AAAGTTTTG--GAATAGAAAATGGGTCTC----TTATGTTTCGTTTTCAA-------C-------------------------GAATAGA---GGAAACA--AACTAT-------------TCTTCTACCACATTCACAAGCGAGGGAAACTGTCAGAAAAG----CATCGTACGATCAAATGCGGTTGCTGGGAAA-----------AAGTTGTAAGGA-GAGGCATGCGCAGAGAATCAGAGTGTC-GTA---------------GTGGTGGCCGCAAACATACACACATACACAGGACACGATAAACCGGATGGATCGAAAAA
s cb4.chrX              9783951 395 + 21540570 G------GGG---------GCAGGGAAGTTCAAACGAGGGGaaacaagacagaat----ggaca---acaaggacaacaaaagttcgtttgacaaacacacacacattCAAA-ACTGATTTGAT--------------AACTAGTag--gggaaaaaaagaagagaaggttCTG---------AAATAAGGCCCCGTTTACTATTTCGTTTTCAC-----TCTTTTTGGAATTGTGTCGAAGAAtgaggaaaata---agaaaaaaccTCTAT-------------TCTTCT-GATTCCTCACAAAAGAAGGAAACTGCCAGAAAAG----CATCGTACGATCAAATGCGGTTGTTGAAGAAGGAATGAAATAGTGCCGTAAGGAAGGGCCATGCGCAGAGAATCAGAGTGTCGGTG---------------GTGGTGGTCGCAAACATA-CCATACACACAGGACACGATAAACCGGATGGATC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1432279 349 -  4500979 G------AAACttaaaaatgggggaaaattcagaag------aacaaGACAGAATGTACGAACA---ACGAAGACAACAACAGTTCGTTTGACAAATAAATA-------GAA-ACTGATTTGAT--------------AACCAGTAGTCAGAATGAATAGAAGA-AATGTTTGG---------AAATAGGTCTC----TACTATTTCGTTTTCAC-----Ttt-------------------------ggaagca---aaaaaaa--ctttat-------------tcttCTCCACACCTCACAAAAGAAGGAAACTGTCAGAAAAG----CATCGTACGATCAAATGCGGTTGCTGGGAAA------------TGTCGTAGGAA---GACATGCGCAGAGAATCAGAGTGTC-GTA---------------GTGGTGGTCGCAAACAT--------ACACAGGACACGATAAACCGGATGGATCAAAAag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   180122 346 +   386604 A------GGAGTCA-----GAATGTGAATACAGAAG-T---GAACACAACAGAATGAATGAACAACGAGGAAGACAAGAGTAGTTCGTTCGACAAACACATA-------CAACACTGATTTGAT--------------AACCAGTAG-------------AAGA-AAAGTTTGG---------AAATATGCCTc----tcctttttcgttttcac-----ttT-------------------------GGAGGaatgcaaaaaaa--ctttat-------------tcttct-tttccttcacaatagaagaaaactgtCAGAAAAG----CATCGTACGATCAAATGCGGTTGCTGGGAAT------------TGTCGAAAGAA--GACCATGCGCAGAGAATCAGAGTGTC-GCA---------------GTGGTGGTCGCAAACAT--ACATATACACAGGACACGATAAACCGGATGGATCGAAAAg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2725793 342 +  4147112 AGAAATTGAAGTTA-----AAATGAGAATTCAGAAG-TTGGAAACAAGACAGAATGAACGAACA---AGGAGGACAAAAACAGTATGTTCGACAAATACATA-------CAA-ACTGATTTGAT--------------AACCAGTAG------------aaaga-aaagtttgg---------aaataggcctc----tcctttttcgttttcactcgttttt-------------------------ggagg-----gaaaaaa--ctttat-------------tcttct-ctcttttcacaaTAGAAGGAAACTGTCAGAAAAG----CATCGTACGATCAAATGCGGTTGCTGGGAAA------------TGTCG------------TTGCGCAGAGAATCAGAGTGTC-GTA---------------GTGGTGGTCGCAAACAT--ACACATACACAGGACACGATAAACCGGATGGatcgaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   63208 371 +   129353 --------------------AATAAAGATGaagaat------aacaaaaaa------atgaaca-------agacAATGCGAACATAACATACAAATACATA-------TGA-AACCAATTGATAGCTTGATAAcccaaaccaaaaaaaaaaagaaaaagaaaa-taaatttggctgaataggaaatgaaatga----aagcCTTTCTTTTCCAT-----CCT-------------------------CCACGTATTCTTCACTA--TTTTCTCGCTTTTTTCATCCCTTCG-TTTCTCtgacaaaagaagaaaactgTCAGAAACGACGACATCGTACGGCAAAAAGCGC-----------------------GGTCGTAGTAG---GGCATGCGCAGAGGATCAGAGTGGC-GCAGCAGCCGCAGCGACGGTGGCCGCCGCAAACAT--------TTACAGGACACGAGAAACCGGATGAATCAAAAGA
i caeJap4.Scaffold18206 I 523 I 2207

a score=34137.000000
s ce10.chrX             4498624 104 + 17718866 GACAGTGAGGAGGAGAAGGAAGGCGGACAAGCAAAAGG----AGAGACCAACCTAAAGGTGCCCCC--CTCTCCTCAGAACTACAACGCAACAGTGGACAATTGCGCCAT
s cb4.chrX              9784346  94 + 21540570 Gtaagagag-------aagaagacggaCATGCGAAAGGATAGACATACCGACCCGAAGGTAGTTTGTCC--CTGTCCAGCCGACTGCGC-------AACCGTTGCGCCAT
i cb4.chrX              C 0 I 1839
s caeRem4.Crem_Contig0  1432628  87 -  4500979 gaaggagag-------aagaagacggacATGCGAAAAG--------ACCGACCTTAAGGTA--TTG--C--CCGTCAGACCGACTGCGCAACA--AAACCGTTGCGCCAT
i caeRem4.Crem_Contig0  C 0 I 913
s caeSp111.Scaffold622   180468  87 +   386604 gaaggagag-------aagaagacggacATGCAAAAGG------AGACCGACCCTAAGGTAT-TGG--CTACCCTCAGACTGTCCGCGC-------AATAGTTGCGCCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2726135  86 +  4147112 gaaggagag-------aagaagacggaCATGCAAAAGG------AGACCGACCCTAAGGTATATTG--C--CCCTTAGACCGACTGCGC-------AATCGTTGCGCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I

a score=597.000000
s ce10.chrX             4498728 6 + 17718866 GTGGCT
s caeSp111.Scaffold622   180555 6 +   386604 CAAGCT
i caeSp111.Scaffold622  C 0 I 684
s caePb3.Scfld02_0      2726221 6 +  4147112 CAAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9784440 1839 + 21540570 I
e caeRem4.Crem_Contig0  1432715 913 -  4500979 I

a score=77.000000
s ce10.chrX             4498734 3 + 17718866 ATG
s caePb3.Scfld02_0      2726227 3 +  4147112 CTG
i caePb3.Scfld02_0      C 0 I 1442
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9784440 1839 + 21540570 I
e caeSp111.Scaffold622   180561 684 +   386604 I
e caeRem4.Crem_Contig0  1432715 913 -  4500979 I

a score=0.000000
s ce10.chrX             4498737 1087 + 17718866  
e caePb3.Scfld02_0      2726230 1442 +  4147112 I
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9784440 1839 + 21540570 I
e caeSp111.Scaffold622   180561  684 +   386604 I
e caeRem4.Crem_Contig0  1432715  913 -  4500979 I

a score=631.000000
s ce10.chrX             4499824 22 + 17718866 ATCTAAAAAAATTTGGGGAATG
s caePb3.Scfld02_0      2727672 21 +  4147112 ATACAAAATAATTTGTA-AATG
i caePb3.Scfld02_0      I 1442 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9784440 1839 + 21540570 I
e caeSp111.Scaffold622   180561 684 +   386604 I
e caeRem4.Crem_Contig0  1432715 913 -  4500979 I

a score=-1102.000000
s ce10.chrX             4499846 48 + 17718866 --------CAAACCAC--AAAACAACA--ATACTACAA--ACAATTTTAGAG-ATCGGTTTTC
s caeSp111.Scaffold622   181245 49 +   386604 --------caaactacaTAAATTTATATGATACAAAAA--ACATGTGCAAAG-ATCA---CGC
i caeSp111.Scaffold622  I 684 C 0
s caePb3.Scfld02_0      2727693 56 +  4147112 TGATATACCAAAATAC---AATGGGCA-GATACAAAAGTTACACCTACAAAGAATGA---CAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9784440 1839 + 21540570 I
e caeRem4.Crem_Contig0  1432715 913 -  4500979 I

a score=17463.000000
s ce10.chrX             4499894 155 + 17718866 --AGAAAACAACCA----GGAACTGCAAAAGAAGACAAA--TGATTTA---AA-ATCCTAGCGATGGGGGTGGGCAGTAGCAGGAGGAGATAAATG--AGCTGATCCTTCTT-ATTTCAGAAAATGTGCTGTGTGATATGATCTAAAATC--AGAAATCAAGAAGAAAA--GTG
s cb4.chrX              9786279 149 + 21540570 --gaaaaaaaacagtt--taaaATGCGGAACAAGAAAATTACGACTTA---AA-----AGAGATTGACGGCGCG----AATGGGCGGCTAAGAATGCAAGCTGATCCCTCTTAATT-CCAGAAACCTGCTAT---AAATGATTGGAAATC--TAAAATCAAGAGAAAAGCG---
i cb4.chrX              I 1839 I 24
s caeRem4.Crem_Contig0  1433628 136 -  4500979 --aaaaaacaacaa----aaaaatgcgG---AAGAAAAC--CGATTTT---AAAAGCTAGACGTTGACAG-----------GGAGGGAGATGAATG--AGCTCATCCGTTTT-ATT-CCGAAAACCTGCTAC-----ATGAtctaaaacc-aaaaaatgaaaagggacATG---
i caeRem4.Crem_Contig0  I 913 C 0
s caeSp111.Scaffold622   181294 144 +   386604 AGAAAACAGAGAAGCGGAGAAAAgacgg---aagaagaa--gaacatacTTAA-AACTAGACGATGGGgt-----------ggagaaaaatggatg--agCTCATCCGTCTT-ACGTCTAAAAATCCTGTAC-----GTGAtctaaaatcaaagaaacgaagaagaaca-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2727749 135 +  4147112 TGAAAACAAGGAAG----GAAAAAACGA---GCGAGCGA--CAATTTA---AA-AGCTAGACGATGGGGT-----------GGGAAGTGATGAATG--AGCTCATCCTTCTT-ATG-CCGAAAATCTTGTAT-----GGGAtctaaaatc-aagaaacgAAAATGAACA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I

a score=-554.000000
s ce10.chrX             4500049 8 + 17718866 GGGAGAGA
s caeRem4.Crem_Contig0  1433764 8 -  4500979 ACTGTCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2727884 5 +  4147112 ---AGCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786428 24 + 21540570 I
e caeSp111.Scaffold622   181438 0 +   386604 C

a score=8718.000000
s ce10.chrX             4500057 62 + 17718866 GAGAGAGAGATGA------GACTGTCATCACTAATCGTTCAATGACATC-CAT----------AAGTAACCTTGA----CTCG
s cb4.chrX              9786452 70 + 21540570 ------GTGATGACGCCTAGATTGGCATCATTAATCGCTCAGTGACATC-CCT--CAAAAATGAGGTTACGTTGAATCG----
i cb4.chrX              I 24 I 657
s caeRem4.Crem_Contig0  1433772 67 -  4500979 -------TACTGACGTCGACATTTTCATCACTAATCGTGTGATGACATG-CCTAACTATACTGGAATAGCCTTGA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   181438 65 +   386604 ---tTGACGATGACGTCCTCATT-------TTAATCGTATGATGACATACCCCAACTCTACAGGAATAACCTTGA--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2727889 74 +  4147112 CTGTCAAAGATGACGTACGCATTGTCATTGGTAATCGTCTGATGACATA-TCTGATTATATAAGGATAACCTTGA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I

a score=-5387.000000
s ce10.chrX             4500119 228 + 17718866 GAGTACCGATTAACTACTGACCTGTGCAGAGATCGGGTG------ACGAGTATTTCATGAGGTA--TATGCGCAAAAATT---------------ATACGTATGT-AACTAAAACATGACGTCGGTGAAACTACAGAGATTTAAAAATAGAGTCCATGGTTTTTTTTCTAA--ACAAACTCTATCTAATAAACGAACTATGCATTTCTCCTTGCCAA---AATGCAA---TTAGAATTTG--TTAACAAGATTAT--AAGAA--AA
s caeRem4.Crem_Contig0  1433839 226 -  4500979 ----ATCAACTAACAAATGACCCACGCATTGACTTAATCTTTTCGGTACGGTTATTTGTGTGATGAGATCTTTGGATATA------------------CGTgctttggtcaaaaaatgacg-cggagaaa--acaaaaatagagatagcTGGACCAA-----GTTTTCGAG---GATGCTAAAGCAGATGGACCTATGGACCA-AAAAGCGTGCAAACTGAATCAAA--TTTAGAATTTGGGCTAACTTTATTAGTATAGAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   181503 235 +   386604 ----ATATACTAA--------TCACGCAACAACTAGATATAT---ATGCGTATGGTTTTGGGTT--GATCTATGAATATCCCAATACATTAATAACTGCttccatttccaaaaaaatgacg--tgTTGGA--ACGGAAATAGCCACCAATGTATCAAGGAAAACTAACTAGTAGGATAGCAAATCTGATGGACCAGAGGTCCA-GCCGACTTGCTaaacaaataaaactttGATGCTTTC---TAACGTAATTAT--GAGAA----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2727963 240 +  4147112 ----ATTTACTAACTAGTGACCCACGTAATGACCTACTCTAC---GTTAGTCTGACTTGGAAAT--GATCTATGGATATT--------TGGATGAGTACTTGTATCGGTCAAAAAGTGACGTCTTTTGGA--AcgaaaatagaagaatatATACCAA-GATGACTTCTGAGCAAAAGCGAAAATCAAATGGAACATTGA-CCA-GTCCGCTTGCTAATAGAATGAGAAATTCGGATTTTCGCTTAACCTAATTAT--GAGAACC--
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I

a score=-669.000000
s ce10.chrX             4500347 32 + 17718866 GATCACGGAAAGCTTCAAATGTTAGATTACCC
s caeRem4.Crem_Contig0  1434065 29 -  4500979 --TCACGACA-AATACATGCATGATTTATAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   181738 30 +   386604 --TCACAAGGCGATGAGAACGTGAGAATAAAC
i caeSp111.Scaffold622  C 0 I 21
e caePb3.Scfld02_0      2728203 32 +  4147112 I
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I

a score=146.000000
s ce10.chrX             4500379 5 + 17718866 CGTGC
s caeRem4.Crem_Contig0  1434094 5 -  4500979 CATGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2728203 32 +  4147112 I
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I
e caeSp111.Scaffold622   181768 21 +   386604 I

a score=-646.000000
s ce10.chrX             4500384 9 + 17718866 ATCTAAGAA-
s caeRem4.Crem_Contig0  1434099 9 -  4500979 CGCCAAAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2728235 9 +  4147112 -ATCAATAGT
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I
e caeSp111.Scaffold622   181768 21 +   386604 I

a score=5028.000000
s ce10.chrX             4500393 274 + 17718866 -----GACGTCAATCGAATTTCAATAATATCA---------GCAAAAATTGCCCCTT--------TACGTGGGTTGAATTCCCAAGCTACCTAGCTAGCAAATGAAGATGTTACTCAGCTC-----AAAACTTTCATTAATAATT-TTATTATT--GTTATT-------------------GAAAACAGAAGATTTGAGGTGATTGCAGCAAATAAATGAAGAAAACAAGATG---AAAGTGGGTGGATGGATACAAAAAATCTTCCACACTGTA--------GCGGCAGCCAAGTCCGGAAACGAATTCCAATGGCGTAGG--AAAGGGAGGGCT-----
s caeRem4.Crem_Contig0  1434108 250 -  4500979 GTTATACTGTTACTGAT----TTATTATGCTA---------GCAGAA-ATGAATTAT--------TGCGGGGGAAGTAATCCCTAGTGAGA-AGAAGGTAAATGAAAATCTAACT----GCCTGGTACAATTT-------------TCATAATCTAGTTGCTACGCATTTCATAATggggaaataaaaaaa----------------------taaaggagcaaaacaagaag---aaagtggg----cggatACAATA-----TCCATCCTGTA--GCTTTGTC--------CGACAGGAAATGAATTCTGGTGGCGTTTGCTCTTGAGAGCA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   181789 257 +   386604 -----gACGTTAATCAA-----ACTTGCGAAATGAAGGAGTGAAGAATACGAAACTT--------CACGTGGGAAGAATTCCCCGGAGATA-ATATGG---ACACGGATATTGCTCGAATATCTGTACAATTT-------------TCATTATT--GTTATC-------------------AATAACAAGAGCTT-------GTTG-------TTGACAGACGAGATAACGAGATTATAGTGGG----CGGATACAAAA-----TCTACACTGTAGCTCTCTGGTGGATATGAGGAAATAAAATGCATTCCGATGGCGTTTGTTCTTGGGAGGGGC-----
i caeSp111.Scaffold622  I 21 C 0
s caePb3.Scfld02_0      2728244 269 +  4147112 -----GACGttaatgaa----caattttcaaatg-------gcAAAATATGACACCTGAGCCAAACACGTGGGAAGAACTCCTTTGGGGGA-ACATTGC--ATGCGGATCTTACTCAGCATTCTGTACAACTTCCCTTCATTATTATCATTGTT--ATTGTC-------------------AATAACAAAAGATT------------------TAGACCtggaaaacaaagattttGGTGTGGG----AGGATACAAAA-----CCGGCACCGTA--TCTCTGGCGGCTCTtaggaaatgaaatgaattccgACGGCGTTTA---TCGGGAGGGAGGCGCT
i caePb3.Scfld02_0      C 0 I 137
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I

a score=125.000000
s ce10.chrX             4500667 18 + 17718866 --CTAGGAATT-TG---TGCAACC
s caeRem4.Crem_Contig0  1434358 24 -  4500979 GCCAGAGAATGATGGAATGGAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   182046 21 +   386604 --TAAGGAATG-TTAAATGGAATG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2728513 137 +  4147112 I
e caeJap4.Scaffold18206   63579 2207 +   129353 I
e cb4.chrX              9786522 657 + 21540570 I

a score=-4991.000000
s ce10.chrX             4500685  93 + 17718866 TTTTTG-------------------TATCTATGTATCATCGTTTTTTTTTCTCATTTTTCTTATAGTTTCTATACAATGAGCATTCAGGGAAACACTTGAATCTTCCATTAT------
s caeRem4.Crem_Contig0  1434382  92 -  4500979 TTTCAG-------------------CCTTTCAGCAACATCCAATTTCctgcccaatttttttccagatcgcCTCTCTCCAGAACTGA-Tgaggttttctttttcatcatctt------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   182067 104 +   386604 TTTCAGCGGGGCTAGAAGCTggcctcttttttccagttttcaatttcctgcTGGAGTTTTT---AGACTGCTTGG----AAAACTGA-TTAGATTTCTCCGTCTTCCATTCT------
i caeSp111.Scaffold622  C 0 I 11
s caeJap4.Scaffold18206   65786  91 +   129353 tctttg-------------------tctctttttgttcttgttcttttttccccctttttc---ctttttcttaa----AGTTGTCA-GTCGACTTTTGTTCTTTTCATTCCTACTAT
i caeJap4.Scaffold18206 I 2207 C 0
e caePb3.Scfld02_0      2728513 137 +  4147112 I
e cb4.chrX              9786522 657 + 21540570 I

a score=-14039.000000
s ce10.chrX             4500778 62 + 17718866 GAAGAAAGA----------AAAATCATAAGATGCATCACAATTTTTCCTG--------GAAATTGTCAGAAGATG-------------AAAAC
s caeRem4.Crem_Contig0  1434480 79 -  4500979 AATCACCAGATAGAAGGGCTGAATCATGTGA----CCATGATTTTATT----------GGAAAcgttagaaaaaagtttgaggcAACAAGAAT
i caeRem4.Crem_Contig0  I 6 I 28
s caeSp111.Scaffold622   182182 52 +   386604 GCCCATAAA---------TGGAATCATGTGG--------GATGCTTAT----------GAAAACGTTCgaaaaag--------------ggat
i caeSp111.Scaffold622  I 11 I 30
s caePb3.Scfld02_0      2728650 63 +  4147112 GATGATGAG----------AAAGTCATGTGG----------TTCTCACCATTTGCAgaaaaaacgttcgcgaaagtt----------aaaaat
i caePb3.Scfld02_0      I 137 I 37
s caeJap4.Scaffold18206   65877 57 +   129353 -----------GTATTGcaagaaacaagaaa-------aaacagttaaag--------gaaaaggttaaaagcag---------ccagaaaa-
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9786522 657 + 21540570 I

a score=89331.000000
s ce10.chrX             4500840 152 + 17718866 GATGGAAATAAAATGGAAGAAAAATGGAAAAAATAAGGAGA--GGCTGTTC--CATTTGTTTGCGCACTTTCC-TCGCTTTTT--ACTT-------TAGGGGGAGAAAAGGTAAGAAT-----A-----GTGGTGAAGCTCACTTGTGTTGAACAATCAAAGATCGGAGTAGAGAC
s cb4.chrX              9787179 163 + 21540570 ggtgagaagaaaaaggaaaagccttgg--aaaatagagaaaagaacTGTTC--GATTTGTTTGCGCACTTTTGCTCGcagttttaactttttttcagg-ggAGAGAGAAGGTAAGAAT---GGA-----GACGAAAAGCTTACAAAAGTTGAACAATCAGAGATCGGAGTAGAcac
i cb4.chrX              I 657 C 0
s caeRem4.Crem_Contig0  1434587 148 -  4500979 ggtgagaagaaaaaagaagagcc-tgg--aaaataagggaa--aaCTGTTC--GATTTGTTTGCGCACTTTGG-TCGCATTTT--ACTT-------GC-GGAGGAGAAAGGTAAAAGT---GAA-----AAGGAAAAGCTCAC--ATGTCGAACAATCAGAGATCGCAGGAAAGAC
i caeRem4.Crem_Contig0  I 28 I 537
s caeSp111.Scaffold622   182264 155 +   386604 ggttagaatggaaaagaagagcc-tgg--aaaatAAGGCAA--GACTGTTC--GATTTGTTTGCGCACTTTGG-TCGCATTTT--ACTT-------TCGGGGGGAGAAGGgtaagaat--ggaaaaaagaaggaaaagctCAC--GTGTTGAACAATCAGAAATCGCActagaaac
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2728750 153 +  4147112 ggtgagaagaaaaaggaagagcc-tgg--aaaatAAGGAAA--GACTGTTC--GATTTGTTTGCGCACTTTGG-TCGCATTTT--GCTT-------TC-GGAGGAGAAGgttaagaat---gaaaaaaggagtaAAAGCTCAC--GTGTTGAACAATCAGAGATCGGAGTAGAAAC
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold18206   65934 153 +   129353 gaggaaaagaaaactaaaatggcttggaaaaaaaTAGGGAC--GACAGTTCTGTGTTTGTTTGCGCACATTCG-TTGC-CTAA--ACTT----------TGGAAAACCAAGTAAGAATAGAGGA-----AGAGAAAAGCTCAC--GCGCTCAAAAATCAGAGATTGGGGTAGAGAC
i caeJap4.Scaffold18206 C 0 C 0

a score=1440.000000
s ce10.chrX             4500992 3 + 17718866 AAA
s cb4.chrX              9787342 3 + 21540570 gaa
i cb4.chrX              C 0 I 679
s caeSp111.Scaffold622   182419 3 +   386604 gaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2728903 3 +  4147112 GTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   66087 3 +   129353 GAA
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=-508.000000
s ce10.chrX             4500995 3 + 17718866 CTG
s caeSp111.Scaffold622   182422 3 +   386604 aaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2728906 3 +  4147112 AAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   66090 3 +   129353 CTG
i caeJap4.Scaffold18206 C 0 I 501
e cb4.chrX              9787345 679 + 21540570 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=-607.000000
s ce10.chrX             4500998  6 + 17718866 ------AATTTT-----
s caeSp111.Scaffold622   182425  6 +   386604 ------aattat-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2728909 17 +  4147112 TACCTCAACTGTATTTT
i caePb3.Scfld02_0      C 0 I 500
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=1214.000000
s ce10.chrX             4501004 223 + 17718866 TACAGACTGTATCATCGGATTGTTCAC--------CGGTTTGGCTTCT--CATTG--TCATAAATTAAATGATGCTACTATGAGAA------ATGAAAAAAAGAAAAACTATGAAAACATTAGGGAAGA-AAAAGTTCTTATGCTTCTACGCTAAGAA----------------------------------------GCATCATTTCCTGATCGGAAATTGTTGGAAAAAAAAAGTGGGAAAGATTATTTTGTCTCCTTCTTTAAGTGCCATTCGGAAAAA
s caeSp111.Scaffold622   182431 248 +   386604 ttca-actGTATTTC----TCGTTCGCGACAGATTTGGAATGGCTTCTGCGAATGcatcgaaaacaaaatgatgtGAATAGGAAGACTCcacattaaaaataaaataa-tatgGA------GTGGAAGATAACAGCTTTTTTCCCGTTTCCTTATGAACTCGAAGGACTCGTAATTTGTGTCCACATTTGCTGATTATGAGTCATTTCCTAATCGGAAATCGCT------------Tagggaa----atttt------ttctctaaatgccattctaaaaaa
i caeSp111.Scaffold622  C 0 I 253
e caePb3.Scfld02_0      2728926 500 +  4147112 I
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=0.000000
s ce10.chrX             4501227 799 + 17718866  
e caePb3.Scfld02_0      2728926 500 +  4147112 I
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I
e caeSp111.Scaffold622   182679 253 +   386604 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=177.000000
s ce10.chrX             4502026 52 + 17718866 TGAAATTTTTGCTTAAAAATTGAATGCAAAATCTCGATAACCTAGAACTATG
s caePb3.Scfld02_0      2729426 42 +  4147112 TGAAGTCATACTTTCAAACTGGATCACAGAATC----------AGATTGGTA
i caePb3.Scfld02_0      I 500 C 0
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I
e caeSp111.Scaffold622   182679 253 +   386604 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=1925.000000
s ce10.chrX             4502078 39 + 17718866 TAGAAATCAGAAACCACCAAAAATAAAAAAGTGAGATGA--
s caeSp111.Scaffold622   182932 37 +   386604 TAGAGATtaaaaaccac----aatcaaaaattgaaaacatt
i caeSp111.Scaffold622  I 253 C 0
s caePb3.Scfld02_0      2729468 37 +  4147112 TAAAGATTAAAAACCAC----AAtttgtgctgaaaaatctT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I
e caeRem4.Crem_Contig0  1434735 537 -  4500979 I

a score=10652.000000
s ce10.chrX             4502117 26 + 17718866 GAATTATTGACGTAAACTCAATAAAA
s caeRem4.Crem_Contig0  1435272 26 -  4500979 gaattctcAACGTAAACTCCATAAAA
i caeRem4.Crem_Contig0  I 537 C 0
s caeSp111.Scaffold622   182969 26 +   386604 gaattctaaacgtaaactctataaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729505 26 +  4147112 CGATTCTAAACGTAAACTCCATAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   66093 501 +   129353 I
e cb4.chrX              9787345 679 + 21540570 I

a score=2827.000000
s ce10.chrX             4502143 40 + 17718866 --AT---TTCATAACGGA----ACTAACACCT------------ATGA-----ACCTA----AAAGTGGA
s caeRem4.Crem_Contig0  1435298 48 -  4500979 --AC---T--AACACGGA--TGTGTGACAATT---------TAAATGCAATGAACCTA----CAAGCGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   182995 46 +   386604 --aaaaGT--ATCACGGA--TGCGTGACACCA---------TAAATGC-----ACCTA----CAAGCggg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729531 47 +  4147112 --TC---T--TACACGGA--TGCGTGACACCA---------TAAATGC-----ACCTACAAGCAAGcgga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   66594 56 +   129353 ATAT---C--ATAACGGATCTATCTACCACTAAAAAGCATTTACATGT-----CTCTA----AATGCGGG
i caeJap4.Scaffold18206 I 501 C 0
e cb4.chrX              9787345 679 + 21540570 I

a score=23825.000000
s ce10.chrX             4502183 39 + 17718866 GAAAAAGATAAAACGA-A---TTCTCTAGGTTACGACTTT--TTC
s cb4.chrX              9788024 42 + 21540570 GGGAAAGATAAAAAGAAA---TACTCGAGGTTACGACTTTCACTT
i cb4.chrX              I 679 C 0
s caeRem4.Crem_Contig0  1435346 38 -  4500979 --GAAAGATAAAAAGACA---TTCCCGTGGTTACGACTTT--TTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183041 38 +   386604 --aaaagataaaaaagca---TTCTTGGGGTAACgacttt--ttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729578 38 +  4147112 --aaaagataaaaagaaa---tacTTGGGGTTACGACTTT--TCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   66650 40 +   129353 ---TAATataaaaaggaatttttctccattttatGACTTT--TTT
i caeJap4.Scaffold18206 C 0 I 28

a score=-5781.000000
s ce10.chrX             4502222 18 + 17718866 CAC--TTTTCTTTTCATTTG
s cb4.chrX              9788066 10 + 21540570 ATC--ATTACAA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435384 10 -  4500979 ATA--GTTGCTC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183079 10 +   386604 agt--tttacaC--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729616 14 +  4147112 CCTCGTTTACCCTT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   66690 28 +   129353 I

a score=89304.000000
s ce10.chrX             4502240 191 + 17718866 CCGCAATCAGTTCTGTTTTTAGAT-TTTTAAT-GTGATAAGGCAACT---------GTAA----ATA---ATAAGACATAAACCAAAAGACTGACCAAGAGCATCGAAAATCTTGAAGGCCAACACCA---CCGCACAACTCTTCGCAGACTTCGCAAAATAGATCAGCGCCAATGTTTCCACATATCTAGG-----AAAATG--ATGAA-----TTTTTGACA
s cb4.chrX              9788076 189 + 21540570 --TCAATATGTGCCATTTATAGCG-TTTCAGG-TCACAACGGAAatc-----------aa----acattgaaaaaaaagaa-----agaactcACCAAGAACATCGAAAATCTTGAAGACCAACACCACCGCCGCATAGTTCTTCGCAAACTTCACAGAAGAGATCCGCACCAATGTTTCCGCAAATCTG---------AATG--AGTAGTTTGTATTTTCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435394 189 -  4500979 --GTAATCAGTGCCATTTTTAGAG-TTTCGGT-TCATCAAGGTGACG-----------AG----AGa---ataaaacagtg-----aaaactgACCAAGAGCATCGAAAATCTTGAAGTCCAACACCACCACCGCACAGTTCTTCGCAAACTTCGCAGAAGAGATCTGCACCAATGTTGCCGCAAATCTGTA-----AAAATG--AGTAG-TTATTTTTTGGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183089 191 +   386604 --GCAATCAGTGCCATTAATAGAGTTTTCAGG-TCATCAAACTAGcg------cgaaaaa----aga---ataaaatggGG-----AAAACTAACCAAGAGCATCGAAAATCCTGAAGACCAACACCA---CCGCATAATTCTTCGCAAACTTCACAAAAAAGATCTGCACCAATGTTACCGCAAATCTGta-aagaaaattg--agttg-ATGTCT-----CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729630 197 +  4147112 --GCAATCAGTGCCGTTTTTAGCG-TTTCTGG-CCATCAAAGTGACGCCGATTCGAAAACATGTaga---agaaaattcag-------aactgaCCACGAGCATCGATAGTCTTGAAGACCAACATCA---CCGCAAAGTTCTTCGCAAACTTCGCAAAAAAGATCTGCACCAATGTTGCCGCAAATCTGTAGGATAAAGTTGGAATTAG-ATG---------A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   66718 176 +   129353 CCGCCATCATCGTTGTGTATATAT-TTTAAGTATTTTTAAGGT---------------CA----ATA-------------------AACACCAACCACGAGCATCGAAAGTCCTGAAGGCCAACTCCGCCGCCGCACAGTTCTTCGCATACTTCGCAGAACAGATCCGGACCAATGTTACCGATAATCTGTA------AAATA--TATAA-TTAATTTATGATA
i caeJap4.Scaffold18206 I 28 I 1276

a score=386.000000
s ce10.chrX             4502431 14 + 17718866 AAATTGGTGGAAAT
s cb4.chrX              9788265 13 + 21540570 TGATAAGCTGATA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435583 13 -  4500979 AGATAATCCAAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183280 13 +   386604 AAATGAGTCAGAA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729827 13 +  4147112 GGGTGGTCTGAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   66894 1276 +   129353 I

a score=90784.000000
s ce10.chrX             4502445 106 + 17718866 TTCAGTAACATACCCAATGATGGTCAAATGTCTCTTTTCTACAGTGTATCGGATTGACTTTACATTGGATTTTTGTAGATACTGCTCGAAGACAGTTTATCTGAAA
s cb4.chrX              9788278 100 + 21540570 ------AACCTACCCAATGATGGTCAAAGGTTTCTTTTCGACATAGCGTCTGATTGACTTTGCAATGAATTTTTGTAGACACCGAACGGAGGcagtttatctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435596 100 -  4500979 ------CGCATACCCAATGATGGTCGAAGGTTTCTTTTCGGCATAACGTCTGATTCACTTTGCAATGGATCTTTGTGGAGATTGCACGAAGACaattaatctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183293 100 +   386604 ------AACATACCCAATGATGATCAAAAGTTTCCTTCCGACATAACGTTTGATTCACTTTGCATTGGATTTTTGTGGACACTGATCGGAGACAATTTATCTGGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2729840 100 +  4147112 ------AACGTACCCAGTGATGGTCGAATGTTTCTTTCCGACATAATGTTTGGTTCACTTTGCATTGAATTTTGGTTGATATCGACCGAAGGCAGTTTATCTGGAA
i caePb3.Scfld02_0      C 0 I 1304
s caeJap4.Scaffold18206   68170 106 +   129353 tttatttacaaaccCAATGGTGATCGAATGTTTCTCTCCGGCATTGTGATTGGTTGACTTTACATTGAATTTTTGTAGAAATCGAGCGAAGGCAgttaatctgaaa
i caeJap4.Scaffold18206 I 1276 C 0

a score=-19832.000000
s ce10.chrX             4502551 80 + 17718866 TATTG---------------------TTATACTTAATTTGTACGATATTGAAAATAAAATGTTT-------CAAAGTTTATTTAAAAATTGGACACATTTTTTCAAGA
s cb4.chrX              9788378 91 + 21540570 -attgaaaaatgataatgatggcgagttgagaaaaataataaattataGTGTAAGACAACGA---------cagattatttttgaaaatt-------ttaatgtcAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435696 53 -  4500979 --------------------------ttgagaaaaatgagtactaaaactcagaaaacaagt---------caaaatttgtttgaaag--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183393 53 +   386604 -ATTA---------------------ATAGGCTAAATAAT-ATTCAACTCATGATAACAAGC------------ACGTAGATTCAAAA--------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   68276 54 +   129353 ----------------------------------aataaatttgtctACTCTATTTCAATGTTcctttcaacattttttttttcaaaa--------------------
i caeJap4.Scaffold18206 C 0 I 130
e caePb3.Scfld02_0      2729940 1304 +  4147112 I

a score=-55698.000000
s ce10.chrX             4502631 425 + 17718866  
s cb4.chrX              9788469 433 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1435749 268 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183446 186 +   386604  
i caeSp111.Scaffold622  C 0 I 57
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I

a score=-2899.000000
s ce10.chrX             4503056 64 + 17718866 ATT------------ATAT---ATTTTCAATGTAG---AGTGTCGTTAGTGG-----------TATCTCTGCAGGGTTTAAC-ACCTAAAATGT
s cb4.chrX              9788902 93 + 21540570 agtttcagtaccaa-atatcgcgttttcagtgcaaaatagCACTATTTGAAGACGATTCACTCAATTTCTAGGACATTTCAGAACATAAAATGT
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0  1436017 64 -  4500979 AGCAAATAAACAAACGTATAGAATTTCCAA-GCAA---AGCAATGTT----------------GATTTC-------TTTC---ATATAAACTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I
e caeSp111.Scaffold622   183632 57 +   386604 I

a score=-169.000000
s ce10.chrX             4503120 5 + 17718866 CAAAC
s caeRem4.Crem_Contig0  1436081 5 -  4500979 AATTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I
e cb4.chrX              9788995 15 + 21540570 I
e caeSp111.Scaffold622   183632 57 +   386604 I

a score=-1146.000000
s ce10.chrX             4503125 29 + 17718866 AAACAATTTGAACGG-ACGTA---AAATTAAAA
s cb4.chrX              9789010 32 + 21540570 GAACTACATGAAATG-TCATATTTCAGATACTA
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0  1436086 29 -  4500979 ----TGCCTACAACGAGCATAGATAACATAAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I
e caeSp111.Scaffold622   183632 57 +   386604 I

a score=-2926.000000
s ce10.chrX             4503154 36 + 17718866 TTTGAAGAACAATTGTTTGGTCAACTTCCAAAATTA--------
s cb4.chrX              9789042 33 + 21540570 tct--cgaaaatt-gtttttttaaactttcgaaTAA--------
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0  1436115 36 -  4500979 CTCGGCGAAAGTTAGTTCGATTTAACATCAAAATAA--------
i caeRem4.Crem_Contig0  C 0 I 106
s caeSp111.Scaffold622   183689 31 +   386604 -------------ttttagatacattttttagataaaaaaaatt
i caeSp111.Scaffold622  I 57 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I

a score=-7448.000000
s ce10.chrX             4503190  76 + 17718866 -TCTGAAAACTAAAGATAAAATTTTATGAA-----AATTCGTATTTTATGAAAATTC---------------GTAT------------------------------------TTTTCCGGTTCTG------------AGAAAAAA
s cb4.chrX              9789099 139 + 21540570 TCTTGCAAATTTAAGAT----TCTCATGAAATACGAAGCCCCACAT--TGAGAAGTCATCTGCGGAAGTTTTGTATGCATTATTGAAAACAAACTCCTAGTATCAATATCAGTTTCCCGTTTGTAAACTATCGTTTCATAAACAG
i cb4.chrX              I 24 I 20
s caeSp111.Scaffold622   183720  39 +   386604 -----------------------tcaaaaa--------------------aaaaatc---------------gaatgcattttt----------------------------cttccggatTCCG--------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I
e caeRem4.Crem_Contig0  1436151 106 -  4500979 I

a score=-19506.000000
s ce10.chrX             4503266 110 + 17718866 --------TTGTT---------A-ATTGTGCACTACT-------TCAATTTC-----CAAAGACA--------TGTTTTCTCTATTTCCAAAAATAATTTTTCAATAATAATAAAGTGCAATATCGATTTCATCCACCTCGCAACATC--------------------------------
s cb4.chrX              9789258 161 + 21540570 TTCATTCTTTTTCAACTTAATAATATTGCTTTCCTTA-------TAAATGTT-------CAAATATTTATTCCTAATTGTTATCTATCTCATGTCGCCGGCATAACGTT-----ATCTCTCTGTCGATGTTTTTCTCACTAGTTGGTTTCATAGAGAACAGTGTTGGGCCCCAAATATTA
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1436257 104 -  4500979 ttgtttcttgttt---------atACTGTTTCATTTG-------TCGAAGCGGCGAAGAAAACAACTGATTTCCGCTTGTTATTCCTCATATA---------------------------CTATCGATTTCCTCTCCA----------------------------GGCCCCG-----TA
i caeRem4.Crem_Contig0  I 106 C 0
s caeSp111.Scaffold622   183759  90 +   386604 --------TTTTC---------A-ATAGTTTCCCATAGATCCATTAAATGtt-----aaaaacaa--------cattttctttctttcgcGGGGCGACGG--------------------TTATTGATTTGTCCTCTTT---------------------------GG------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2729940 1304 +  4147112 I
e caeJap4.Scaffold18206   68330 130 +   129353 I

a score=2860.000000
s ce10.chrX             4503376 41 + 17718866 --------------------CCCCTCTACAGGTAAACAAATACTGATGAGCGGACCTTGC-----C
s cb4.chrX              9789419 62 + 21540570 TCGATCGTCCTAATGACCCTTCATAATACAGGTAAACA----GAAGAGAATGGACCATCGTAGGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1436361 41 -  4500979 TCCAC--------------------GTACAGGTAAACAGTGTGCGGTGAGCGGACCACCA-----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   183849 40 +   386604 --------------------TTCTTCTACAGGTAAACAAGG-GGGATGAGCGGACCATCT-----C
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2731244 40 +  4147112 --------------------CCGCTCTACAGGTAAACAGGG-ATAAAGAGGGTCCTCTCT-----C
i caePb3.Scfld02_0      I 1304 C 0
e caeJap4.Scaffold18206   68330 130 +   129353 I

a score=-7626.000000
s ce10.chrX             4503417 66 + 17718866 A--------CCTCTTGTTGTGTCTGCGTCTCTCA-TCCCTCTTCATT-----------CTTTTTGAT----CTTTCCACGTGGCAGTAAA
s cb4.chrX              9789481 65 + 21540570 G-AGCGCGCACACACGTAGttcctgcgtctcttc-tctctaA-C--------------CACGTTGAT----CT----ACGTGGCGGGAGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1436402 80 -  4500979 G-AGATCTCCCTCTCATTGTCCCTGCGTCTCCTG-TCTCtct-cgctttttttct---tgttttgac----CTCTACACGTGGCGGGAGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   183889 74 +   386604 G--------------ata-tgtctgcgtctctctgtATCTCT-CATTATCTGCATACGTGGAAAGATATCGATGTTTCCAGAACAGTGAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2731284 82 +  4147112 TCATTTACCTCTTTCAcactttctgcgtctcttt-tatCTCTACACTGTCTCTGT---TAATAAGAT----GTGCGTACGTGGCAATAAA
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18206   68460 60 +   129353 --------ACCTATCactttctctgcgcctcctc-tctctCT-GACT-----------CACC---------GCTCATCCACGTAAATAAA
i caeJap4.Scaffold18206 I 130 C 0

a score=-4626.000000
s ce10.chrX             4503483 27 + 17718866 TAACCG-ACGCATTGTTTCTTCTAGAAG
s cb4.chrX              9789547 26 + 21540570 TGACC--CCCGAGAGAATCTTCCAGGTC
i cb4.chrX              I 1 I 28
s caeRem4.Crem_Contig0  1436483 28 -  4500979 AAACCAATCTCATCGATTCTTCCAGAAC
i caeRem4.Crem_Contig0  I 1 I 29
s caeSp111.Scaffold622   183963 23 +   386604 ---TCATTCGTATTG--TCTTCTTCATC
i caeSp111.Scaffold622  C 0 I 3
s caeJap4.Scaffold18206   68520 13 +   129353 TAGCT--CACTATTG-------------
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2731366 29 +  4147112 I

a score=105025.000000
s ce10.chrX             4503510 350 + 17718866 ACCGTCATT----TGCTT--------TTATTTGGTCAACGtttttctttcttt--------ctttctttattcattttt--------atg-tttcctGTTTAACTTCCTGTTATTTTT-------TAGTAGAATTGAACTCACGTTATCCACCTTGAGCAGACAATTATCACATTCGTAACCCGAAACAATGTGCTCTTTGCATCCAGAGCAATAGTTG---TGTTGTTCACTGTAATTGATTGAACTCCAGTAGTGTCCGCCTGAAAAATTTTAAAATCA---ATTGGCCTACCATCCGACTGATAAGTT----ACTCTTTCGA--------------TTTTTTCC-------GTCACAGCTGTTAAGT-CTTTGGATTTTCGTTTTTTTTT-----------------------------------------------------TTTTCAATTTTTTTTTGTTACGGCA
s cb4.chrX              9789601 354 + 21540570 ACAGTCTATGGGCTattt--------tcgttcattct----cttccttatt-c--------attaattttctgattttt---------ct-ctcatttttc--gttttcatttgtcccgttttAATAGTAAA----AACTTACATTATCCACTTTAAGAAGACAGTTATCACATTCGTAACCCGATACGATATGCTCTTTACATCCGGAACAGTAGTTG---TGTTGCTCTTCATGTTCGATAGGGCTCCAGTAGTGTCCGCCT--ACAATGAGAAGTTCGTTAGTTGGTTTCCGATC--ACTGATAAGTAGTTTTcttctttgat----------ttcttttctctctcggCGATCACAGATGTTAGGTACTgctg---tttttttctcgct------------------------------------------------------------tatttttttgttacaaCG
i cb4.chrX              I 28 I 1
s caeRem4.Crem_Contig0  1436540 347 -  4500979 ACagtctct----cattt--------tcattcattcc----ttTTCTTCCCGT--------ATTTTCTTTCTGTTGTTC---TAGCGGCG-CTCATTgctt--ttttgtgtatttcct-------TACGAAA----AACTTACATTATCCACTTTTAGTAGGCAGTTATCACACTCGTAACCCGATACAACGTGCTGCTTACATCCCGAACAGTAGTTGTGTTGTTGCTCGTTTTGCTCGATAGGACTCCAGTAGTGTCCACCTGAAAAGTGATGAGttcatttcttgatttccgATC--ACTGATaag------ttttctctgcg----------tctttctCTCT-----TGATCACAGCTGTTAGGTGCGGTTGACACTcgtttcttcgt------------------------------------------------------------ttctttttaGTTACAgca
i caeRem4.Crem_Contig0  I 29 I 525
s caeSp111.Scaffold622   183989 385 +   386604 --AGTCAtt----tcctc--------tcatttttctc----ttttcttcct-c--------ttttttcggctaactttt-----gcagtt--tgctagttt--tttttcgttgaacGT-------TCTCAAG----AACTCACATTATCAACCTTGAGTAGACAATTATCACATTCGTAACCCGAGACGATGTGCTCTTTACAACCAGAGCAGTAATTA---TGTTGTTCGCTTTGTTCAATAGGACTCCAGTAGTGTCCGCCTGAAAGTTTGATAGTtcatttgttgattttcGATC--ACTGAtaagta----tttt--------------------ttcttgcc-----CGATCACAGCTGTTAGGTTAGGTcgatttcgttttttttctc-cgttaCAACAT----ggaaaaaacgtgtttttgGACACCGGAAGAGaatttctatcaatttctcatttttaagtCG
i caeSp111.Scaffold622  I 3 I 11
s caePb3.Scfld02_0      2731395 369 +  4147112 ACAGTCATT----CCTTTCTCGAGAGTCATTCCTCTccccgttttcttttt-tcaaaggcattcttccggtttattcttttttaacggtttctcccacatt--ttctCCGcttcttga-------aattgaa----aactcacattatcTACTTTGAGTAAGCAATTATCACATTCGTAACCCGAAACGATGTGTTCTCGACAGCCAGAACAGTAGTTG---TGTTGCTCGTTCTGCTCGATAGGGCTCCAATAGTGTCCGCCTGTAAAATGATAAGTTCATTTGTTGGTTTCCGATC--ACTGATAAGTA----TTTTCTCCGC-----------TGATTCTCTCT-----CGATCACAGCTGTTAGGTGCGCtcgattgttttttctgtctc-----------------------------------------------------------ttttttcttattacagca
i caePb3.Scfld02_0      I 29 I 409
s caeJap4.Scaffold18206   68533 343 +   129353 ---GTCA------TGTGT--------ACGGTTATTTG----Gctcattatt-a--------ttttttttttcaatttct-----actGCA-------------AACCATACTATTTAT-------T----------TACTCACATTGTCCACCTTAAGAAGGCAGTTATCACACTCGTAACCCGAAACAATATGCTCTTTGCATCCTGAGCAATAGTTA---TGTTGCTCGCTGCAGTCAATGGGGCTCCAATAGTGTCCACCTGgaaattt----gttcatttttttactctttctt-----------------ttttttttgagagtcAGGTTATTATTATCTTT-----CTAT------TGTTTGGC-----AGATTGTCTCTTAAATCTCATGTTACAACTTGGTCGGCAAagacgaaagaaaaaaaa---------------------agttttttgat--cGGCA
i caeJap4.Scaffold18206 C 0 C 0

a score=0.000000
s ce10.chrX             4503860 1 + 17718866 C
e caePb3.Scfld02_0      2731764 409 +  4147112 I
e caeJap4.Scaffold18206   68876 0 +   129353 C
e cb4.chrX              9789955 1 + 21540570 I
e caeSp111.Scaffold622   184374 11 +   386604 I
e caeRem4.Crem_Contig0  1436887 525 -  4500979 I

a score=-154.000000
s ce10.chrX             4503861 21 + 17718866 TAAGTT-TCAAAGATT----TTGAAA
s cb4.chrX              9789956 22 + 21540570 GAACATATTAGTGTTT----CTAAGA
i cb4.chrX              I 1 I 16
s caeSp111.Scaffold622   184385 21 +   386604 CAGCAT-TCACTGATT----TTGTAA
i caeSp111.Scaffold622  I 11 I 6
s caeJap4.Scaffold18206   68876 24 +   129353 -AAACT-TCAAAACTTGACGTTAAAG
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2731764 409 +  4147112 I
e caeRem4.Crem_Contig0  1436887 525 -  4500979 I

a score=-4673.000000
s ce10.chrX             4503882 20 + 17718866 ACTGGTTGAACTTTGGAATT----------
s cb4.chrX              9789994 20 + 21540570 ttttgtcgaaatttgGGAGA----------
i cb4.chrX              I 16 I 81
s caeSp111.Scaffold622   184412 20 +   386604 TCTAGTCAAGACAATCAAGA----------
i caeSp111.Scaffold622  I 6 I 191
s caePb3.Scfld02_0      2732173  9 +  4147112 TTTgctcaa---------------------
i caePb3.Scfld02_0      I 409 I 12
s caeJap4.Scaffold18206   68900 30 +   129353 TTTGGTTTGGCGcttgcaaaaatcgatatt
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1436887 525 -  4500979 I

a score=-8255.000000
s ce10.chrX             4503902 24 + 17718866 --------AATGGAAAAGTA---------------------------TAATATTTATAA
s cb4.chrX              9790095  9 + 21540570 --------TACGGAACA------------------------------------------
i cb4.chrX              I 81 C 0
s caeSp111.Scaffold622   184623 23 +   386604 --------GAAAggacatt----------------------------tttcatttataa
i caeSp111.Scaffold622  I 191 C 0
s caePb3.Scfld02_0      2732194 10 +  4147112 --------gaaggaaaat-----------------------------------------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18206   68930 59 +   129353 aacGCTGAGATGGGAAATAaaaacattctttttttttttcttgtcggtgaaatttttga
i caeJap4.Scaffold18206 C 0 C 0
e caeRem4.Crem_Contig0  1436887 525 -  4500979 I

a score=-12082.000000
s ce10.chrX             4503926  45 + 17718866 ---AG---------------------------------------------------------------------------------------------AAA------TGACTTACTTTTAGATG-------------------------------------ACGTGTCATTAA-------------------------------------------------------------------TATTC--------------------------TTTCGT
s cb4.chrX              9790104 181 + 21540570 ---AA---------------------------------------------------------------------------------------------AAATGCACCAAAGtcattttctattaaaaagGAATCGAAAAGAACATATTTCTATAGGGCTTTAGATGCCAtagaaaatacttttttaacattttcgaGAGAGATTTACTAATCTGGTATATGAGGTACGGCTACCCGAGATTAGTTTTATGCATTTTTGCCAGGACGTCTAATTCCTT
i cb4.chrX              C 0 I 143
s caeRem4.Crem_Contig0  1437412  45 -  4500979 ---aa---------------------------------------------------------------------------------------------aaa------aaactcactttttgatG-------------------------------------ATGTGTCATTGA-------------------------------------------------------------------TAGTT--------------------------TTCCTT
i caeRem4.Crem_Contig0  I 525 C 0
s caeSp111.Scaffold622   184646 138 +   386604 ---cATAAGATTTACTTATATTGAGCATTTTCTcagatttctctttcattccgCACGTTTTCCATGACTTTTTGTCggatttttctcatttttcaatagaa------atacTCACTTTTCGACG-------------------------------------ACGTGTCATTGA-------------------------------------------------------------------tagtt--------------------------ttcctt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2732204  43 +  4147112 --------------------------------------------------------------------------------------------------gaa------atactcactttttgatg-------------------------------------aagtATCGTTGA-------------------------------------------------------------------TGGTT--------------------------TTCCGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   68989  48 +   129353 agaaa---------------------------------------------------------------------------------------------aga------aaactcaCTTTTCGAAG-------------------------------------AAGTATCGTTGA-------------------------------------------------------------------TAGTT--------------------------TTTCGT
i caeJap4.Scaffold18206 C 0 C 0

a score=215325.000000
s ce10.chrX             4503971 345 + 17718866 TTCCTCACTGCCCATAATTTTCTAAACACCCACAAAACAATGCTCGAGAAAACGATAAATAAAGCAGCGGCCAATAATTCATCATACACGTCCATTTCCATT-------------T----TGTCAGACGGCAA------TAGGTTGACCACAGTGAAAGCGAGCG--ATTTTTCGAA------AAATGTCTTTTAACTTGAATTCTTCTCAGAGCGACTCTTCATTTCTG--------TGATGTAATGGCAT--AGATTTTTGGGTGACTAGTTTTCGTGTTTCTATTTGCCATCACCCAGCCTTCTCCACC-GCTGCACTCTTTCTCTCTTGTTC--TTTATTCCG-CGGGGC---------GAGGA--------------CCGCGACGCGGCAC-----TTTGATGCGTTGCGGTT
s cb4.chrX              9790428 401 + 21540570 TTCCGAACTGCCCATAGTTTTCGAAATACCCATAGCATAAAggttgaaaaaatgatgaacaGCGCTGCGGCTAACAACTCATCATACACGTCCAtttccattgttttttgatatat----ttt--gaagGCGGTGAATTttgattgagaaaa---aaaacgaagaagatgatttgtgttgaaaaaatgtcctTTAGATGAAGTTCTTCTCAGAGCGACTCTTCATTTCTCGGTGCGTCTGTTGTAATGGCAT--AGCTTTTTGGGTGACTAGTTTTCGTGTTTCTATTTGCCATCACCCAGCCTTC-CTCGC-ACTACTcgctctctttttttttatatatatTCCG-TGAAGGAAAAcgaatgaaaagaaaagagaaatagcCGCGTCGCGCAAG---ACCTCAATGCGTTGCGGCC
i cb4.chrX              I 143 C 0
s caeRem4.Crem_Contig0  1437457 337 -  4500979 TTCCGAACTGCCCATAACTTTCGAAATACCCATAACGTGAACATtgtaaaaactataaatagTACGGCAGCTAGTAATTCATCGTGCACgtccatttccatt-------------t----tct--gaggaaaa--------aattgagaaaa---a-----aggtagTTGATTTGTG------AAATGTCCTTTAAATGAAG---TTCTCAGAGTGACTCTTCATTTCTC---GTGTGTGTTGTAATGGCAT--AGATTTTTGGGTGACTAGTTTTCGTGTTTCTATTTGCCATCACCCAGACCTT-CCACC-GCCGCACTCTC--------------TATATTCcg-tggaga---------gagagaggaggaggaatTGCCGCGACGCGC------GCCTCAATGCGTTGCGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   184784 339 +   386604 ttcctgACTGCCCATAACTTGCGAAATACCCACAAAATGATAGTTGAAATGACGATAAATAATGCTGCAGCCAACAATTCATCATACACGTCCATCTCCATT-------------T----TGT--GGTGTCaa------ataattgagaaga---aaaacagact--TTGATATGTT------GATTTTGCTTTAAATGAAG---TTCTCAAAGCGACTCTTCATTTCTC---GTGTGTGTTGTAATGGCAT--AGAATTTTGGGTGACTAGTTTTCGTGTTTCTATTTGCCATTAGCCCGCCTTC-CCACCGGGCGCGCGCACTCTTC---------TATATTCCG-TGAAGG--------------------AAAAACGGCCGCGACGCGTCAC----TCTCGTTGCGATGCGGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2732247 344 +  4147112 TTCCTGACTGCCCATAACTTTCGAAATACCCATAAAACAAACGTCGAAAAGATGATAAATAATGCAGCAGCCAGTAGTTCGTCATACAcgtccatttccatt-------------t----tct--gtggtaaa------atgattgggaaaa---aattcgag----ttgATATGTG------GATTGTCCTTTAAATGAAG---TTCTCAAAACGACTCTTCATTTCTC---GTGTGTGATGTAATGGCAT--AGATTTTTGGGTGACTAGTTTTCGTGTTTCTATTTGCCATCACCCAGCCTT--TCACC-GGCGCACTCTCTTTTC---------TATATTCCG-TGGAGG---------GAGAA------AGAAACAACCGCGACGCGTCCCCCCTTCTCGATGCGATGCGGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   69037 327 +   129353 TTCCTCACAGCCAACAACTTTCGGAATAGCCACAAAATaaaggttgaaaaaatgatgaaaagtgCAGCAGCCAATAGCTCATCGTACACATCCATTTCCATT-------------TAAGGTGT--GGCGTGAA------ATGGTTGAAATTA---------------TCTTTTTGTT------GAA------CTAGACG------TTTTCAAAAAGACTTTTCATTTCTC-----GTCTGTTGTAATGGCATAAAGATTTTTGGGTGACTAGTTTTTCTGTTTCTATTTGCCATCACCTAGCCAT--CCACC-GTCGCACGCTCCTTTC---------AATATTCCGTTGGAGG---------GAAAA----AGAGAACCGGCCGCGACGCGGGGC-----CTC--TGCGATGCGGTT
i caeJap4.Scaffold18206 C 0 I 2987

a score=12681.000000
s ce10.chrX             4504316 490 + 17718866  
s cb4.chrX              9790829 561 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1437794 526 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1112
s caeSp111.Scaffold622   185123 517 +   386604  
i caeSp111.Scaffold622  C 0 I 265
s caePb3.Scfld02_0      2732591 527 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   69364 2987 +   129353 I

a score=0.000000
s ce10.chrX             4504806 1 + 17718866 T
e caePb3.Scfld02_0      2733118 0 +  4147112 C
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e cb4.chrX              9791390 0 + 21540570 C
e caeSp111.Scaffold622   185640 265 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=-1806.000000
s ce10.chrX             4504807 33 + 17718866 GGTTTTTCAACAA-----TCTTTGCGTAGTCTTGTTCC-
s cb4.chrX              9791390 30 + 21540570 ----aataaccac-----tggtttggttttttttgtgct
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2733118 30 +  4147112 --------accatttcgaTGATTTCGTATTTTAGTTTC-
i caePb3.Scfld02_0      C 0 I 1088
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e caeSp111.Scaffold622   185640 265 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=510.000000
s ce10.chrX             4504840 9 + 17718866 TATTCGAAG
s cb4.chrX              9791420 9 + 21540570 tcttTGAAG
i cb4.chrX              C 0 I 1033
e caePb3.Scfld02_0      2733148 1088 +  4147112 I
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e caeSp111.Scaffold622   185640 265 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=0.000000
s ce10.chrX             4504849 808 + 17718866  
e caePb3.Scfld02_0      2733148 1088 +  4147112 I
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e cb4.chrX              9791429 1033 + 21540570 I
e caeSp111.Scaffold622   185640 265 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=2247.000000
s ce10.chrX             4505657 70 + 17718866 TTTAGGTCAAACTCCAGATGTTTTTT------AGAAGCT-CTTTTTCATT--AAACAAAAATTAAAAGTACTCCGTCAT
s caeSp111.Scaffold622   185905 75 +   386604 TTTAGGTCAAACTCCAGATGGTCTTTTTTAACAGAAGCCGCTTTGGTATTTCAAACAAA---TGATTGTACT-CGTCAT
i caeSp111.Scaffold622  I 265 I 933
e caePb3.Scfld02_0      2733148 1088 +  4147112 I
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e cb4.chrX              9791429 1033 + 21540570 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=0.000000
s ce10.chrX             4505727 1179 + 17718866  
e caePb3.Scfld02_0      2733148 1088 +  4147112 I
e caeJap4.Scaffold18206   69364 2987 +   129353 I
e cb4.chrX              9791429 1033 + 21540570 I
e caeSp111.Scaffold622   185980  933 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=238.000000
s ce10.chrX             4506906 25 + 17718866 TTTTTGAATTAGTCCAATTC-TTAGG
s caeJap4.Scaffold18206   72351 26 +   129353 tttttgtttcgtttcatttcgtttcg
i caeJap4.Scaffold18206 I 2987 C 0
e caePb3.Scfld02_0      2733148 1088 +  4147112 I
e cb4.chrX              9791429 1033 + 21540570 I
e caeSp111.Scaffold622   185980 933 +   386604 I
e caeRem4.Crem_Contig0  1438320 1112 -  4500979 I

a score=600.000000
s ce10.chrX             4506931 1 + 17718866 C
s caeRem4.Crem_Contig0  1439432 1 -  4500979 C
i caeRem4.Crem_Contig0  I 1112 C 0
s caePb3.Scfld02_0      2734236 1 +  4147112 C
i caePb3.Scfld02_0      I 1088 C 0
s caeJap4.Scaffold18206   72377 1 +   129353 c
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9791429 1033 + 21540570 I
e caeSp111.Scaffold622   185980 933 +   386604 I

a score=2410.000000
s ce10.chrX             4506932 35 + 17718866 TTTTTGATTTTCTCTCTCTCTCTCTCTCTTTCCCA
s caeRem4.Crem_Contig0  1439433 34 -  4500979 CTTCTCATTTCCCATTTCTCTCG-TGCCTCCGTCA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   186913 27 +   386604 -------TTTTCgcttttcttat-tctctACCCCA
i caeSp111.Scaffold622  I 933 I 1
s caePb3.Scfld02_0      2734237 26 +  4147112 -------TTTTCGATTCCATCCT-TCTCTG-CTCA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18206   72378 35 +   129353 ttccctttttccgttctcattcgttcACCCCACCA
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9791429 1033 + 21540570 I

a score=91597.000000
s ce10.chrX             4506967 363 + 17718866 --GCCAA-------AAACTAACCGCGTTCAAATACTTTAAACAA---ACGAGAACTGTATTTTCTC-------GCAC-TGCTTT--------------------TGCTTCACTTG------------CTCCTCGCAATCA--GTGCACAGC----GGTGCCCT-----------------------AGAATGCCCG-ATTTTGAC--ATTTTTACCTTCTCGTCCTCCTCCACC----ACCATCATCGCCCACCATCAGCGA-TTTCCTTGCGCCACT------CCCTCGACGATTCGGTTTTCCACAAACATTTT-TCCACGCACACACACACACAC---ACAAGTTTATGTGTGTGTGTGAGTGTGAGTGTGTTTCATTTGTGTCACTCACTCTACTTTT------TTCTCTCTCATTT-CACTAT--------------CCACC----CATACTCGAACTGTATTTATTTGTCTGT---TGTT-TGTG
s cb4.chrX              9792462 371 + 21540570 --GCCAT-------AAACTAACCGCGTTCAAATACTTTAAACAA---ACGAGAACTGTATTTTCTCGGCTAATGTTGCTGCCTCAGTTTTTCGACTTCATTTCGTTTTCCTCTCGTTTCCTCTGACACTCTCAGCAATCAGTGTGCAATTCTCGGAGCGCTCC-----------------CAGAACAAAATTCCCG-ATTTTGACATATTTCTA------------ACTTCGTC---------------------TCGTTGAGTTTGCGTCTCACAA-------TCCAG-------CGATTT----------TTTC-TTCACAAACATCCTCTCACAC---ACAAATt---------------gtgtgtgagtg-------tgtgtgtTTCACTCCACACACTCA---TTATCACAATTTTTCAC-GCTCACTTCGGCCGACTTAGCCACTCACTCTCGAACTGTATCTATTTGTCTGT---TGTTGTGTG
i cb4.chrX              I 1033 C 0
s caeRem4.Crem_Contig0  1439469 337 -  4500979 --ACCAT-------AAACTAACCGCGTTCAAATACTTTAAACAA---ACGAGAACTGTATTTTCTC-------GCTG-TGCCTC---------------TTTCGT----------------------CTCTCAGCAATCA--GTGCAATTC----AGCGCTCC------------------------AAATGCCcgaattttgac--attttta------------accCCCTCAGCCACCATCAAC-ACCACCATCAGCGA-TTTTCTTGCCTCAC-------TCCCGGAGGCTACtcctt----------tttt-tccacaaaCATC----CACAA---GGCAATT---------------GTGTGAGTGTGTTTCA-TTGTGTCACTCACTCCACactcttacttttttctctcattttcacaaTTCTCCTCAACTG--TTAGC----CACACTCGAACTGTATCTATTTGTCTGT---TGTT-TGTG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   186941 381 +   386604 --ACCTT-------AAACTAACCGCGTTCAAATACTTTAAGCAA---ACGAGAACTATATATTCTC-------GCACTGGCCTC--------------ATTTCGtgtctctctcattttctct----ctcttcacaATCA--GTGCAAATTC---AGCGCCCCTTCTTTCCCTTCAACAGCCGCCCAAAATGCCcg-attttgac--attttta------------cCTCCGCC----ACCATCAAC-CCCACCATCAGTGA-TTTTCTTGCCTCCTCAACTCGCCCCGGCCAC--TGCTTT----------TTTCTCGCACAAACATCCTCTCGCAC----AAAACT---------------TTGGGCGTGTATTTCA-TTGTG----TCACTCcacactcttttt-ctctctctcattttcactATTCTCCTCTACAG--TTAGC----CTCACTCGAACTGTATCTATTTGTCTGT---TGTT-TGTG
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2734264 344 +  4147112 --ACCTT-------AAACTAACCGCGTTCAAATACTTTAAACAA---ACGAGAACTGTATTTTCT---------------------------------------------TCTCGCAGTGTCT----CTCCTCACAATCA--GTGCATTTT--------TCCCTAAATTTTCCCCTCTCGCCGCCC-AAATGCCCG-ATTTTGAC--A-TTTTA------------CCTGCGCC----ACCATCA---CCCACCATCAGCGA-TTTTCTTGCCTCCAC------TCCCGGCCAC--TGCTTT----------TTTC-CACAAACACATcccccc-cACCTCAAAAACT---------------GTGTGTGTGTATTTCA-TTGTG----TCACTCCACACTCTAacc-atttctctcatttccacCTTTCTCTTCGACTG--TTAGC----CACACTCGAACTgtatctgtttgtctgt---tgTT-TGTG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18206   72413 332 +   129353 CCACCATTCTTCCAAAACTAACCGCGTTCAAATACTTTAAACAAACGACGAGAACTATATTTTTTCTCGCTATGCTG-TGCCGG--------------------TGCCGGTGCCGCAATT-------CTCTCCGCAATCA--GTGCGGTCTC---ACTGCGACTTGAGTTTCTGCTCTGTC------TCTTGTCGG-ATTTTGAC--A-TTTTa------------cctttaaa--------------------aacattta-ttttcgtTC------------TCTTGA------CAACTT----------TGTT-TCATTGTATCTCTCTCCACAC-------------------------TCGGTCGCCTATTT---TCACG------CCCCcaatctct-----ctctctctctctctctcttttctct---------ttAGC----CACACTCGAACTGTAG-TATTTGTCTGTTTGTGTC-TGTG
i caeJap4.Scaffold18206 C 0 I 927

a score=-45281.000000
s ce10.chrX             4507330 633 + 17718866  
s cb4.chrX              9792833 481 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1439806 513 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   187322 509 +   386604  
i caeSp111.Scaffold622  C 0 I 36
s caePb3.Scfld02_0      2734608 508 +  4147112  
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold18206   72745 927 +   129353 I

a score=-5448.000000
s ce10.chrX             4507963 52 + 17718866 CAAATGATATAGGCGACGCCAGCAAAAAAAAAAAAAGAAATCGCATCAGAAG
s cb4.chrX              9793314 39 + 21540570 CTAGCCATCAAG----CATTGGCATaaaaaagacagagaaga---------a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1440319 48 -  4500979 caatcgATCCAG----CTTgcggaaaaaaaatgaaatcaagaaCCGCAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2735148 26 +  4147112 ----CGAT----------TGGTAGAAATGAATCAAATCGA------------
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold18206   72745 927 +   129353 I
e caeSp111.Scaffold622   187831 36 +   386604 I

a score=28635.000000
s ce10.chrX             4508015 174 + 17718866 AAAGCTTCACAAATCTGTTTTACCAACAATTTGTCTTG--------AAGAAG-------AAGAGAAAA----AGTAGGCGGAGA-----CGAA-AAACCACACAGGAGTAGAAAAAGACGGTGGGATAGATAACAAATTGACATTGTTCAACCATTTCGCCCTCCTCTCCGTGTGTTTGT------CTAATT-------CTT--C--TTGTCTCGA-----------
s cb4.chrX              9793353 168 + 21540570 gaagc----caaatcgtttttgccaatag-----ttag--------aagaag-------aagaaaaagagatagtGGGTGgagctaaaaaaaa-aga----acagaagCAGAAAAAGACAGC------GATAACATGCTGGCACCGTTCGACCC-----------CTTTCCTTCAATTTTAAGttaccaattttcagaattcgtc--tTCTTTCCA-----------
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0  1440367 158 -  4500979 AAAGC----CAAATCTTTTTTACCAACAA-----CTAGATtctagaaaaacg-------aagaagaagaaaaagtgggcggagt-----agag-gaa----acagtagtagaaaaagaca--------gaTAACACGGCGACACTGTTCGACCC-----------TCTCTGTGTGTTTGT------CTAATT-------CTTGTCCATTCTCTCAA-----------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   187867 158 +   386604 AAAGC----CAAATCTTTTTTACCAACATatt-cttag--------aaaaaa-------aagagaaagaaa-agtgggcggaga-----aaaagaaa----acaacagtagaaaaagaca--------gataaca----aagaCTATTCGACCC------------GTCTGTTTGTTTGT------CTAAAT-------CTTGCC--TTTTCTCCTTGTCTTCTTGA
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2735174 158 +  4147112 AAAGC----TAAATCTTTTTTACCAATatgat-tctag--------aaaaaatcatagggaggaggaaaaa-aatgggcggggt-----ttga-aaa----acaaaaatagagaaagaaa--------gacAAT--------ACTGTTGAACAA------------TTCCGTGTGATTGT------CTAATT-------CTTGcc--ttt--ccattctcttttgGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   72745 927 +   129353 I

a score=40.000000
s ce10.chrX             4508189 23 + 17718866 ---ACGAGGTTGTTCGGTTTGATTAT
s caeRem4.Crem_Contig0  1440531 20 -  4500979 --AAAGAGGCT----GCATCGAttat
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   188025 22 +   386604 AAAACGTGGCC----AGttaaattat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2735332 18 +  4147112 AA----CGGTT----AGTCATattat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   72745 927 +   129353 I
e cb4.chrX              9793521 28 + 21540570 I

a score=-20517.000000
s ce10.chrX             4508212 162 + 17718866 GAAAT---TTCTTTTCC------------------GGTATT--------TTTCCAGTTGCCCATTTGCCC-------------------CATTATTTTTTTTGGACGTTTTCTCTTTTTGTCGCAAGATTTT-------GGTTTCGACC--GTTCGAGTCTTTGCCCTCAGAATCGTTTTTGTCGTAGGCACT-CATTTTTGGCCGCATTTTTATTCGCA
s cb4.chrX              9793549 136 + 21540570 aaaatttctgttcCGGTCGAAACGCCCTTGGCCTCCGTAGG--------TACCTATTT---AGTTTCGTT--------------------------------GCCTGCCACTAAGTCGCCTATAATTG--------------------------CAA----TTGTTATGCTCGTATTCTCT---TTATGCACCTCATTTTG--------TCTCCTCccca
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0  1440551 166 -  4500979 gaaat---tgttttgacaaaaa------ttgttccCATGAGAcccttt-ttcctattttcccattttctc--------------------------------gaatgtcttctcatcatttttgaatgtGTTAGAAAAAGAACGAAACC--CTTCAAATCTTTGCCCTACGAATGGTTTCG---GAAGGTACC-CATTTTG------GTTTTCCTTCCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   188047 145 +   386604 gaaat---tgcTTTCC-------------------GGTAG---------TTTCTGCCATTCGGTTTCTTC----------------------------CTTGAAATGGTTTCacgtcatttttaaaatgtgtTCCAACCGGTCAAAAccatttccaattcttc----------ttgTCCTT---CTAGGTACC-CATTTGtg--ttcttccttctttcgG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2735350 200 +  4147112 gaaat---tgtttttct-------ctcctttcatttttagttttctttctttcttcctttctgctttttcgcttcaggttccatttctcgaatctttttttgaaatggccCCA--TTACTTCGGAAATTCGTTCCGACCGGTTGAAACCA-TTCCAAGTCTTTGCCCTCAAAATTGTTACT---GTAGGTACc-tatttgt---tctttttttctttctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   72745 927 +   129353 I

a score=78534.000000
s ce10.chrX             4508374 212 + 17718866 TTTCTTTAAGTCGTTCATAATTGCAATTCTTCGATTCTTGG---GTTTTCGAATATTCTGGTT--------CTTTCCCTTCTTCT----------TTTTTCTGAC----AGCGCTTACCCCCCATTTTTCAG--------CGG-------------------AATTATGTCTGACCACGAGAACACTGGTGAAAACACCTCCGAATATCAGTACAAGCAACCACCACAAAAGAGCATCGACGAGCTTCTCAATGCTGACAAGGT
s cb4.chrX              9793685 213 + 21540570 atctttt------------------tttctcc--cggttg----attctcgttcaattttttca------ctttttttcttttcgtgcgttcttttcttttcgaa-----------agaccgaatc-ttcaaatttttc-cag-------tcTACATA-CTCAATTATGTCGGATCACGAGAATGCCGCTGAAAACGCTTCCGAGTTCCAATACAAGCAACCACCACAGAAGACAATCGACGAGCTGCTCAAGGCTGATCAGGT
i cb4.chrX              C 0 I 495
s caeRem4.Crem_Contig0  1440717 244 -  4500979 GTTTCCTAAGTCGTATATAATTGCAATTCGCC--TGCTTGT---ATTCTgaatccttcttttca-------tctctccattttcctGACTAGTTTTCTTTTGGTCTTTACCTTCTTATTCTGAATCTTTCAAGGTCATC-TGA-------TTCTTACAGTTCAATCATGTCGGATCACGAGAACACCGCTGAAAACGCCTCCGAGTTCCAATACAAGCAACCACCACAAAAGACGATCGACGAGCTTCTCAGCGCTGACAAGgt
i caeRem4.Crem_Contig0  C 0 I 145
s caeSp111.Scaffold622   188192 241 +   386604 TTCTACTAAGTCGTCTATAATTGCAATTCTTC--TGCTCGT---ATTCTGACTGCACCTCATCC------GCCTTttattcttct--------cctctttttgtctatttcctctatttttgaatacatcAAGGTCAAa-taagtttgtttttttagagTTCAACCATGTCTGATCACGAGAATGCCGCTGAAA---ACTCCGAGTTCCAGTACAAGCAGCCACCACAGAAGACGATCGACGAGCTTCTCAGCGCTGACAAGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2735550 238 +  4147112 tctcgcTAAGTCTCCTATAATTGCAATTCTTA--TGCTCGTTTCCTTCTCAAGACACCTCATCC------Gtattttcgtcttct----------tttttttgt--------tctgtttttgaattcttcaagGTCAAACtaaacatttccattttcagatcaatcatGTCGGATCACGAGAACACCGCTGAAACCGCCTCCGAGTTCCAATACAAGCAACCACCACAGAAGACGATTGACGAGCTGCTCAAAGCTGACCAGGT
i caePb3.Scfld02_0      C 0 I 196
s caeJap4.Scaffold18206   73672 206 +   129353 TTTCGATAAGCCAACAATAATTGCGA--------AGTTTG----ATTGTCTATGTAtttcttctctcgttctctttctctctacc----------ttattttgtt-----------ctgttgtgatttttaactttctc-t---------ttttcA------GATCATGTCGGACCACGAGAGCGAGGGAG---------CAGAGTTTCAGTACAAGCAGCCGCCACAGAAAACGATTGATGAACTGCTTAACACTGATCAAGT
i caeJap4.Scaffold18206 I 927 C 0

a score=310.000000
s ce10.chrX             4508586 5 + 17718866 TTGTT
s caeSp111.Scaffold622   188433 5 +   386604 TGGTC
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   73878 5 +   129353 ATGTT
i caeJap4.Scaffold18206 C 0 I 26
e caePb3.Scfld02_0      2735788 196 +  4147112 I
e cb4.chrX              9793898 495 + 21540570 I
e caeRem4.Crem_Contig0  1440961 145 -  4500979 I

a score=567.000000
s ce10.chrX             4508591 170 + 17718866 ------AAATTTATTTTTAACAAAAAAAATTGAACATTTTGCGAAATTGCTAATGGATGTGGATTGATGAATCTGATCACAAGACAGCTTTGGCCTTCGATCTATTAATAAAAAGTAGTTAATTGAAACAAAGAAAGCCGAGCCAAGCTAC---GTTCAAAACACAAAATCCTTGCATT
s caeSp111.Scaffold622   188438 146 +   386604 GGTGCAAAGTctaatttc---------agtttccca--TGGCCTCATTCCTAATGGATTTGG-TTGGT-CATGGGATCATACGA----------TTtcg----------aaactgtttttgactggaaaaaatgatcttCATCCAAAATACCAACCCCAAAACACAAATTCTTgacatt
i caeSp111.Scaffold622  C 0 I 39
e caePb3.Scfld02_0      2735788 196 +  4147112 I
e caeJap4.Scaffold18206   73883  26 +   129353 I
e cb4.chrX              9793898 495 + 21540570 I
e caeRem4.Crem_Contig0  1440961 145 -  4500979 I

a score=0.000000
s ce10.chrX             4508761 1381 + 17718866  
e caePb3.Scfld02_0      2735788  196 +  4147112 I
e caeJap4.Scaffold18206   73883   26 +   129353 I
e cb4.chrX              9793898  495 + 21540570 I
e caeSp111.Scaffold622   188584   39 +   386604 I
e caeRem4.Crem_Contig0  1440961  145 -  4500979 I

a score=692.000000
s ce10.chrX             4510142 32 + 17718866 AAACTTTTATAAAAATCCAATGACAATCACAT
s caeRem4.Crem_Contig0  1441106 32 -  4500979 aaactaaaataacaCTTCCAAAACCAACATAT
i caeRem4.Crem_Contig0  I 145 C 0
e caePb3.Scfld02_0      2735788 196 +  4147112 I
e caeJap4.Scaffold18206   73883 26 +   129353 I
e cb4.chrX              9793898 495 + 21540570 I
e caeSp111.Scaffold622   188584 39 +   386604 I

a score=-598.000000
s ce10.chrX             4510174 13 + 17718866 TTTAGTATGAAAT
s caeRem4.Crem_Contig0  1441138  6 -  4500979 TCTAAT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18206   73909 13 +   129353 TTAAAGACGAATT
i caeJap4.Scaffold18206 I 26 C 0
e caePb3.Scfld02_0      2735788 196 +  4147112 I
e cb4.chrX              9793898 495 + 21540570 I
e caeSp111.Scaffold622   188584 39 +   386604 I

a score=-237.000000
s ce10.chrX             4510187 2 + 17718866 TT
s caeJap4.Scaffold18206   73922 2 +   129353 GA
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2735788 196 +  4147112 I
e cb4.chrX              9793898 495 + 21540570 I
e caeSp111.Scaffold622   188584 39 +   386604 I
e caeRem4.Crem_Contig0  1441144 0 -  4500979 C

a score=414237.000000
s ce10.chrX             4510189 554 + 17718866  
s cb4.chrX              9794393 644 + 21540570  
i cb4.chrX              I 495 C 0
s caeRem4.Crem_Contig0  1441144 626 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   188623 589 +   386604  
i caeSp111.Scaffold622  I 39 C 0
s caePb3.Scfld02_0      2735984 607 +  4147112  
i caePb3.Scfld02_0      I 196 C 0
s caeJap4.Scaffold18206   73924 550 +   129353  
i caeJap4.Scaffold18206 C 0 I 4536

a score=-1794.000000
s ce10.chrX             4510743 121 + 17718866 ACT------------GAACCTCATATTTATATTCA----AAT---TCTCA-----ATGAAAATGAC----TTTTTTCTCCAATTTACCG-----------CCCA---------CCCCAAATGTT-----------TTCCTTGTTTTATGGTTATTATTGA--TTTTGATGCACTAGTTGTGT
s cb4.chrX              9795037 155 + 21540570 TCCCCC----------A---TAATATTTATACCAT-TGCAATTCGTCTCATCACTCTGAAAATGAC-----TTCTCCTTCTCCCTCTCA-----CTGctatccaaaaaagttttaccgaaatcaaaaaaaagttgttcaatTGTATTTAATCGAT-TGAT--ACAGAAGGCACTAATTGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1441770 131 -  4500979 CCT-------------------ATATTTATATCTTCCTCAAC---TCtcatcaa-ctgaaaatgaccgt-ttttttcttcatcccaTCC-----TTCGCATCCA---------TACCAaaattc--------ttcctcttttctatATGGTTA---TCAA--ACATAAAACACTAGATGTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   189212 135 +   386604 TCCCCTTCTCGCAGAAACACTTTTATTTATATTCA----AGC---TCTCATCAT-GTGAAAATGAC--TGTTCCCTTTCCATCCCATCC-----AATCCATCCA-----------CCgaatttc-------------ttctattttatGATTA---TCAAACGATTGAAACACTTGT-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2736591 136 +  4147112 TCTCtcctttgaaaata---ttatatttATATCCG----AAT---Tctcatcaa-ctgaaaatgac--t-tCTTTTCCCCATCCCATTCTTCCAAATTCATCCA--------------AGTTTC-------------CAATGATTTATATCTG---Acaa--gtttgaaacatttattgTGT
i caePb3.Scfld02_0      C 0 I 19474
e caeJap4.Scaffold18206   74474 4536 +   129353 I

a score=-2578.000000
s ce10.chrX             4510864 55 + 17718866 TGTGTGATGCCTCTCCCC--TTTCCCCGCCAAATTGAAATGATATATAAAGTGATAT
s cb4.chrX              9795192 41 + 21540570 -----GTTGTGTTT------TTTCTCCA--AGCTGA---TTCCATATGAAGTGGTat
i cb4.chrX              C 0 I 6804
s caeRem4.Crem_Contig0  1441901 42 -  4500979 -----AGTATGCTTGACCGATTTTT-------ATTG---TTCCATATAAAGTGATAT
i caeRem4.Crem_Contig0  C 0 I 1619
s caeSp111.Scaffold622   189347 41 +   386604 TGTGTGATATCCGTCGCTGAGtttt-------actg---ttttataaaaat------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2736727 19474 +  4147112 I
e caeJap4.Scaffold18206   74474 4536 +   129353 I

a score=-431.000000
s ce10.chrX             4510919 105 + 17718866 TTCATAATCATTTAAAACAAAGTGT-----------------------ACTGTTTTGTGAAACGTTGGAAACTAACCAAAAAA--------CACTAACTTGCTGCGTTTCCAAAAACTTAAGATCCTAATACGCAT
s caeSp111.Scaffold622   189388 119 +   386604 t----aatgagtgaaaatgaatttttcctttgtagtttttaatttttcactgtttcaaatcaCGTTCCAAAGTTTCTCAGAAATCTTTCTACAAAGATTTCCGGTATTTTCAA-------------CAATACACAT
i caeSp111.Scaffold622  C 0 I 79
e caePb3.Scfld02_0      2736727 19474 +  4147112 I
e caeJap4.Scaffold18206   74474 4536 +   129353 I
e cb4.chrX              9795233 6804 + 21540570 I
e caeRem4.Crem_Contig0  1441943 1619 -  4500979 I

a score=0.000000
s ce10.chrX             4511024 79 + 17718866 TTACACGTTGTTCCGCAATATTCACGTGGTTTCAGCTGGGCCGGAACATTGTATTAATTTCAGAATTAGAGATTTTATT
e caePb3.Scfld02_0      2736727 19474 +  4147112 I
e caeJap4.Scaffold18206   74474 4536 +   129353 I
e cb4.chrX              9795233 6804 + 21540570 I
e caeSp111.Scaffold622   189507 79 +   386604 I
e caeRem4.Crem_Contig0  1441943 1619 -  4500979 I

a score=-3039.000000
s ce10.chrX             4511103 471 + 17718866  
s caeSp111.Scaffold622   189586 394 +   386604  
i caeSp111.Scaffold622  I 79 C 0
e caePb3.Scfld02_0      2736727 19474 +  4147112 I
e caeJap4.Scaffold18206   74474 4536 +   129353 I
e cb4.chrX              9795233 6804 + 21540570 I
e caeRem4.Crem_Contig0  1441943 1619 -  4500979 I

a score=1200.000000
s ce10.chrX             4511574 16 + 17718866 ----AAGAAATTCATGCTTT
s caeRem4.Crem_Contig0  1443562 16 -  4500979 ----aagaaggttcTGCCCA
i caeRem4.Crem_Contig0  I 1619 C 0
s caeSp111.Scaffold622   189980 20 +   386604 aaaataaaagttctTGCCCA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2736727 19474 +  4147112 I
e caeJap4.Scaffold18206   74474 4536 +   129353 I
e cb4.chrX              9795233 6804 + 21540570 I

a score=3847.000000
s ce10.chrX             4511590 101 + 17718866 CTTGCTCCATTAGGAAATACTTAATGAAATTGGAAATTTTATCGGTGCTG--------GG--CCA-GAAGAGC------------CAACAA----GATC-------------CATTTTGAATT------TCCTCAACTTGGA---A--TTTG
s cb4.chrX              9802037  91 + 21540570 CCTACTTCTTCAGGAGCTACTTAGTTAGATTAGAGATTTTAT----------------GGTTTTG-GTACCACTCGTCCATTTCCCGAAAA----G-----------------------------------TTCAGCTTTCT---CAGTT--
i cb4.chrX              I 6804 C 0
s caeRem4.Crem_Contig0  1443578 130 -  4500979 CTCTTTCCATTAGGACATACTCAGATAAATGAAAGATTTTATTGGTGctctttcgaaagattctg-GCACGGC---TTCATTCTTCAACAA----GATT-CATTTCAAACCAAACCTTTCCTC------CACTCGTCTTTTC---C--TT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   190000 126 +   386604 CTCTTTCCATTAAGGCATACTTAGATAAATGAAAGATTTTATTGATCCTC--------GTTTCGGAGTCCCACC--ATcctccttcaaaaa-----atc-ttcattcATCCACACTTTTCATT------CCCTCTTCTgtcatttc--tg--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2756201 135 +  4147112 CTCTTTCCATTAGGACATACTCAAATAGATGAGGGATTTTATTGCTGCTC--------GTTTTCG-GTACCACCA-accctttttcgaaaactgggATCATTCtctcaacttcatttttcacttttcaccaTTCTTCTTCCA---C--TC--
i caePb3.Scfld02_0      I 19474 C 0
e caeJap4.Scaffold18206   74474 4536 +   129353 I

a score=49235.000000
s ce10.chrX             4511691 150 + 17718866 AATTTGATAAT-----ATGAGCT------CGTTGCTCCACCTCATGCTTCTTTTTAGTTTTTTGAATATTGTGACAACTAGTCGCGTTGAGTGCATTTGAGTGCATTGTGGTTCTGGAATGTGATCCACTAACCAGCTGCTATTCCTTG-AAAGGTAAGTTA
s cb4.chrX              9802128 144 + 21540570 --ACTGAAGTC-----AtgaatttctcttctcttctccaaATTCTACTCCTCGTTTCCTTTCCGATCATCGGATCCGGAACCCGTG----------TACAGTGTGATATCGTTCTCGAGTGTGACCTAGAGACAAGCTGTTACTCTCTC-AAGGGTAAGTCA
i cb4.chrX              C 0 I 552
s caeRem4.Crem_Contig0  1443708 144 -  4500979 --TTTGGcgtt-----atgatgattttcactCTTGTCCACGTTTTGCTTCTGGCAACATCTCCAATCGTCGAATCCGCAAGCCGTG----------TTGAGTGCCACGTCGTTCTTGAATGTGATCCACTCACGAGCTGCTATTCGCTC-AAAGGTAAGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   190126 149 +   386604 --attttggTCCAAGAATGACTTTCATGCTTCTCTTCCAAGTTCTCCTTCTCGCAACGGCTCCGATTGTTGGAGTCGCAAGCCGTG----------TCGAATGCCACGTTGTTCTTGAGTGTGATCCACTCACTAGCTGCTATTCGTTG-AAGGGTAAGTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2756336 144 +  4147112 --ATTTCTACC-----ATGAATTTCTTGGCTTTGCTCCACATCCTTCTCCTTGCAACTTCCCCACAAATCCACTCGGCAGAACGAA----------TGGTGTGTCATGTCGTTCTGGAGTGTGATCTCAACACCAGTTGTTACTCTCTC-AAAGGTAAATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   79010 147 +   129353 AATTTATTAAC-----ATGAATTTGCTGATATTCTTACAACTTTCTCTTATCACAGATTTTAACATTTATGGAGAGACTGTGAGAA----------TTGAATGTAATGTTGTTCTAGAGTGTGACATGGAAAATAGCTGCTATTCGCTGAAAAGGCAAGGTA
i caeJap4.Scaffold18206 I 4536 C 0

a score=-575.000000
s ce10.chrX             4511841 3 + 17718866 CAA-----
s caeRem4.Crem_Contig0  1443852 3 -  4500979 GAA-----
i caeRem4.Crem_Contig0  C 0 I 124
s caeSp111.Scaffold622   190275 3 +   386604 gaa-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2756480 3 +  4147112 GAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   79157 7 +   129353 -AATAATA
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9802272 552 + 21540570 I

a score=305.000000
s ce10.chrX             4511844 4 + 17718866 TAGT
s caePb3.Scfld02_0      2756483 4 +  4147112 GAAT
i caePb3.Scfld02_0      C 0 I 443
s caeJap4.Scaffold18206   79164 4 +   129353 CAAT
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9802272 552 + 21540570 I
e caeSp111.Scaffold622   190278 0 +   386604 C
e caeRem4.Crem_Contig0  1443855 124 -  4500979 I

a score=364.000000
s ce10.chrX             4511848 4 + 17718866 TTTT
s caeJap4.Scaffold18206   79168 4 +   129353 TTTT
i caeJap4.Scaffold18206 C 0 I 650
e caePb3.Scfld02_0      2756487 443 +  4147112 I
e cb4.chrX              9802272 552 + 21540570 I
e caeSp111.Scaffold622   190278 0 +   386604 C
e caeRem4.Crem_Contig0  1443855 124 -  4500979 I

a score=-3544.000000
s ce10.chrX             4511852 381 + 17718866 CTTTACTTTACAAATCGATAAAGTCAATCATTGACTCAACTTTCGATCTGAGAAATTTCTTTCAAATATTTCAAGGTGCGCTGATTTCAGCTGTCAAATTATTTTATAACCAAAAGTTTTTGACATGATCTCCCATAAGTTTTCTAACAACCTTTGGATATGTTATATCATTAAATATATTCATTAATATCAAAGTTGAAAATTTTATTGGTTTATGAAATTCACTGAAAAATGCTATCAAATGTGAGCATTTATGGGGTTATTCAAGTAATCTTGCTTCATCAGTtatgggacattcgtaaatagtctcgctattggtcttgcacgcatacggatcatttcaaaattagtct----------tgaatgcaagcctaacagaggaaatacg
s caeSp111.Scaffold622   190278 230 +   386604 ----------cgaataaaaaaaggGCAT----------ATTCTAGATATAGAAA-----------------------------------------------------------------TCGAAATGTTCTTTGATGAGTCT-------------AGATA-------------AATGTACT--TTGAGGACAACGCCAGAAGTTCAATCGAGTTATAAATAATTCTGATAA------------TTGAGTATATATG--------------------Cttcataaaaaaaatgaaa-----aaata---------tgagattTGGATACATATGAAGC--TTCCAACTTAGACTATATACAGTAGGAAAGTCATCGCAACAATCTAAGAACT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2756487 443 +  4147112 I
e caeJap4.Scaffold18206   79172 650 +   129353 I
e cb4.chrX              9802272 552 + 21540570 I
e caeRem4.Crem_Contig0  1443855 124 -  4500979 I

a score=273.000000
s ce10.chrX             4512233 1 + 17718866 t
s caeSp111.Scaffold622   190508 1 +   386604 T
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   79822 1 +   129353 t
i caeJap4.Scaffold18206 I 650 C 0
e caePb3.Scfld02_0      2756487 443 +  4147112 I
e cb4.chrX              9802272 552 + 21540570 I
e caeRem4.Crem_Contig0  1443855 124 -  4500979 I

a score=235.000000
s ce10.chrX             4512234 8 + 17718866 taTTCATT
s cb4.chrX              9802824 8 + 21540570 TGTTTGTA
i cb4.chrX              I 552 C 0
s caeSp111.Scaffold622   190509 5 +   386604 ---TTGGG
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   79823 8 +   129353 tatttttt
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2756487 443 +  4147112 I
e caeRem4.Crem_Contig0  1443855 124 -  4500979 I

a score=68360.000000
s ce10.chrX             4512242 116 + 17718866 TTTCAGGAGGCTTCCCATTTGTTTATGGTAACAAAAAGGAAGAAGACTGGCGTGCAGGAGGAAAACGATACAGTATGTTTTTGGCAAGAAACGTGGAGACTGTCCGTTGTGTTTTA
s cb4.chrX              9802832 107 + 21540570 TTCCAGGTGGCTTTCCATTCGTGTATGGAAAGCAGAAGGACG---------ATTCTCGAGGTAAAAAGTACAGCATGTTCTTGGCGAGGAACGTGGAGACACTCCGCTGCGTTCTA
i cb4.chrX              C 0 I 6457
s caeRem4.Crem_Contig0  1443979 116 -  4500979 TTTTAGGAGGATTTCCATTTGTCTatggaaataagaaagaagaagactggCAAGCTGGTGGCAAGAAGTACAGCATGTTCTTGGCGAGAAATGTGGAGACCGTCCGCTGTGTTCTA
i caeRem4.Crem_Contig0  I 124 C 0
s caeSp111.Scaffold622   190514 116 +   386604 TTTCAGGCGGATTCCCGTTTGTGTATGGGAacaagaaggaggaggactGGCGCAACGGAGGAAAGAAGTATAGTATGTTTTTGGCAAGAAACGTGGAGACCGTCCGCTGCGTTCTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2756930 116 +  4147112 TTTCAGGAGGATTACCTTTCGTCTACGCGAACAGTTTCGAGAAGTCACACCACAAGGATGGCAAGAAGTATAGCATGTTTTTGGCAAGGAACGTGGAGACTATTCATTGTTCTCTA
i caePb3.Scfld02_0      I 443 C 0
s caeJap4.Scaffold18206   79831 113 +   129353 tttcaggtggCACCCCGTAAACGTATGACAGCGAAACCAATACAGACTTG---AAACGAGGCAAAATGAACACAATGTTTCTGGCTCAAAACGTTGAGACTGTTCGATGCGTTCTA
i caeJap4.Scaffold18206 C 0 C 0

a score=6700.000000
s ce10.chrX             4512358 22 + 17718866 TACGATAATTCCGAGTTCTGA------------A
s caeRem4.Crem_Contig0  1444095 34 -  4500979 CTCGACAAATACGAGTTTTGAGGCACCGTCTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   190630 33 +   386604 CTCGACAAATACGAGTTTTGAGGC-CACCCATCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2757046 34 +  4147112 CTCGACAAATACGAGTTTTGAGGCACTCGCATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   79944 22 +   129353 CTCAACGAATACAACTATTAAA------------
i caeJap4.Scaffold18206 C 0 I 4677
e cb4.chrX              9802939 6457 + 21540570 I

a score=30968.000000
s ce10.chrX             4512380 222 + 17718866 CTAGACTT------AACGTCAACAGACAT------------TCTAAAAAACTA---TTCCTTACATTGAAAA--------TGAAGAGGTTTTCTGTTCTAAATGATT--------------TTATTGTAATAAATATTTCTTATGTTTCTTAATCTTATGTAGACATGAAAGCTGTTTAGTTGTTCTTTTGA------AAAGAA-ATTAAGATGAAATGAAAGAGAAAGGAAGCAACGGGTTTTTCGATTTTTC------TTCAAAATCAGCTGTTGA
s caeRem4.Crem_Contig0  1444129 226 -  4500979 CCTGGCTTCTTC--GACAACAACacatga----------aaaacaagaagtta-AATACTACGTTCCTAAAAATACTGTCAGAAGAAGCCTATT--------TTATT--------------GTATTGTAATGAATATTTT---------------GTGTGAAGACATTGAAGCA-TTTGGTTGTTCAAtcaaagagagaaagagagatgagaagatatgaaagagaaagTAGCCAGCGGG-TtctcctttcttctttctctttaaAATCAGCTGTTGA
i caeRem4.Crem_Contig0  C 0 I 163
s caeSp111.Scaffold622   190663 227 +   386604 CctgcttttttttcgacaacAACTACTACATTAAAAGAATAACTAAAAAGTTAGATTGCATTGTTCgcaaaa--------tgaaacattctctt--------ttatt--------------ttattgtaataaaaatatt---------------gtaTAAAGACGTGTAAGCT-TGTGGTTGTTCTTAAGAAgagatgaggag-gaggagaagataTGAAAGAGAAAGCAGACAGCggg-ttttcatttcatcgtG---TTGAAAATCAGCTGTTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2757080 220 +  4147112 CCAGGTTATTCT--GACAACAActgctga---------------aaaaagtta-attcccatgttctgaaaa--------taagagacactctt--------tcatttcctttttttctaatttttgtaataatattttt--------------cttataaaGACATTCAAGCT-TCTGGTTgttcttttgaaa----gaaaag-gaaaagaagatatGAAAGAGAAAGTAGACAGCggg-ttttcatttcttcgtg---TTGAAAATCAGCTGTCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=-2647.000000
s ce10.chrX             4512602 48 + 17718866 CATTTCTTATTATATGGTTAAAA-------------------TTGATATTTCTATTGAAAAAAAACA
s caeSp111.Scaffold622   190890 36 +   386604 GGT---TGAGAATATAATGAAATGC-----------------TTGATTATCCTATC-----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2757300 64 +  4147112 GGT---atagagaatgagagaatCCGCATATCTCATCTTATATTGaggattcaattttgaaaaaatg
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1444355 163 -  4500979 I

a score=-63.000000
s ce10.chrX             4512650 72 + 17718866 TCAAGTTTGAAATCATTTTCGAAAACTGAAGTTCAAATTTCTACGCCTCTTGTGTTCATCTTAA------CCTAAATT
s caeSp111.Scaffold622   190926 66 +   386604 -TAAGTTCACGaaca-------aaact----tttctttctctctcttttttccgtttctctcAGAGCTGTTCTAGATT
i caeSp111.Scaffold622  C 0 I 64
e caePb3.Scfld02_0      2757364 148 +  4147112 I
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1444355 163 -  4500979 I

a score=0.000000
s ce10.chrX             4512722 43 + 17718866 AAAGCTTAGCTTAACTCAAATAAGACTTTTCAAAGTCTGAAAT
e caePb3.Scfld02_0      2757364 148 +  4147112 I
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeSp111.Scaffold622   190992 64 +   386604 I
e caeRem4.Crem_Contig0  1444355 163 -  4500979 I

a score=80.000000
s ce10.chrX             4512765 15 + 17718866 TATTAAGTCTAGATA
s caeSp111.Scaffold622   191056 11 +   386604 TATTCAGTCTT----
i caeSp111.Scaffold622  I 64 C 0
e caePb3.Scfld02_0      2757364 148 +  4147112 I
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1444355 163 -  4500979 I

a score=1323.000000
s ce10.chrX             4512780 12 + 17718866 CACCTCCCCCTC
s caeRem4.Crem_Contig0  1444518 12 -  4500979 TATTTTCCTCTC
i caeRem4.Crem_Contig0  I 163 C 0
s caeSp111.Scaffold622   191067 10 +   386604 --TCCCCCCTTC
i caeSp111.Scaffold622  C 0 I 12
e caePb3.Scfld02_0      2757364 148 +  4147112 I
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=26561.000000
s ce10.chrX             4512792 471 + 17718866  
s caeRem4.Crem_Contig0  1444530 482 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 151
s caeSp111.Scaffold622   191089 428 +   386604  
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0      2757512 427 +  4147112  
i caePb3.Scfld02_0      I 148 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=-2393.000000
s ce10.chrX             4513263 10 + 17718866 ATCAAT-TTCC--------------------
s caeSp111.Scaffold622   191517 10 +   386604 GAGAGT-TTAC--------------------
i caeSp111.Scaffold622  C 0 I 76
s caePb3.Scfld02_0      2757939 31 +  4147112 TAGAATCCTACCCGCGGAGATTCCAATTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1445012 151 -  4500979 I

a score=-1477.000000
s ce10.chrX             4513273 112 + 17718866 GATTTTG----------AAACCCAAAAAATCAATGTTAATTTAGCACTGAAACATGCTGGTAGGCACTCAATATTTTAAGCTTCTAGCTAGAACACTTAGGACTTTACTTACGGAATAGCCT
s caePb3.Scfld02_0      2757970  78 +  4147112 GCTCTTGTTTATGCCTTACGCCCA------TGGTGT---------------ATATGCTAGGAAGTAATGAATG-----------------GGAGCCCTAGA---TTCATTTCAGAATAG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeSp111.Scaffold622   191527  76 +   386604 I
e caeRem4.Crem_Contig0  1445012 151 -  4500979 I

a score=-1989.000000
s ce10.chrX             4513385 72 + 17718866 TTTAGACTTTTAGTTAGCCGTTTGGG------GTTAGGAAAAACAAAGAACCCTAGAAGCT-------ATGTTTCCGTTG--------AGAAC
s caeSp111.Scaffold622   191603 64 +   386604 TCTAGATTCTCA-------GTTTTGA------AGAGTGAGAACTAGAA------ACAAGtgagaa---acattttcttcg-------tGGGAC
i caeSp111.Scaffold622  I 76 C 0
s caePb3.Scfld02_0      2758048 78 +  4147112 ---AAACTCT----------TTTGGAAACaacaaagtgaaaaacaaac--tCGTACAAGTTTGTACGTATATCTCTTTTGCATAACCTTGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1445012 151 -  4500979 I

a score=-2549.000000
s ce10.chrX             4513457 73 + 17718866 CAATGACCATCTATC-----TTTCAACGAACA---------TTTCACCT---------AATAACAGAGTCATGAGA---TTGTGACTTGTAAATATTTT
s caeRem4.Crem_Contig0  1445163 69 -  4500979 -----------CCTTGACGATCTgatgaaa-----------ttttatttgaaaa----aacaacaaagtcATGGGT----TCTTATCCgtaaacatttt
i caeRem4.Crem_Contig0  I 151 C 0
s caeSp111.Scaffold622   191667 85 +   386604 -CACGACACTTTATCATTCACTTTAGAAAACAGctcaagtttttcttcttcgtc----aacAAT---ATCATGggg------ttttcgaaaaatattgt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2758126 87 +  4147112 -CAAAAAAGATTCTCAGCACCCTTCAGAAACAGC-------TTTCGTCCTCAAACCGGAACAA----GTCATGAGGAATTCTTATTCCGTAAATATTTT
i caePb3.Scfld02_0      C 0 I 106
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=-5816.000000
s ce10.chrX             4513530 93 + 17718866 TTTCCATCTTT-------CCCCTGTTTCAGTCG-----TCATTTGAACGTTCTCTTTCTTTTCTTCCTCGACAGTGAAAATAATAAACGTAAAAGGTTTTAAAAT
s caeRem4.Crem_Contig0  1445232 85 -  4500979 -----gttttggTAGATCCCTCTAGTTTAGTATCCGAACCAGCAAAACATGA-CTTTATTTACGTTCATTAGACTCAAAAT-----TCGTATCAAC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   191752 59 +   386604 --------tttgtAGA--ACTCtagttttgtat---------------------ttttctcaCCCACA----GCTAAAAACA--AGTCGCCACAAC---------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2758213 106 +  4147112 I
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=-3238.000000
s ce10.chrX             4513623 28 + 17718866 CACCCATTTTC--------------------------AAATTCCATCGTGTAAT
s caeRem4.Crem_Contig0  1445317 25 -  4500979 CAGCcaacttt-----------------------------ttctgaattctatG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   191811 54 +   386604 CACCCATTTCGTCTGGAATTCGTATGCGAACTAGCACCTATCATGCCTTTTAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2758319 21 +  4147112 ----CACCTCG-----------------------------TTACGACTCCTCGT
i caePb3.Scfld02_0      I 106 C 0
e caeJap4.Scaffold18206   79966 4677 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=58334.000000
s ce10.chrX             4513651 469 + 17718866  
s caeRem4.Crem_Contig0  1445342 451 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622   191865 436 +   386604  
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2758340 428 +  4147112  
i caePb3.Scfld02_0      C 0 I 46
s caeJap4.Scaffold18206   84643 467 +   129353  
i caeJap4.Scaffold18206 I 4677 C 0
e cb4.chrX              9802939 6457 + 21540570 I

a score=-5529.000000
s ce10.chrX             4514120 47 + 17718866 ------ACAAGGAGAGGTAGGACAGCGT-------TGAGAT---TTTTTTTCAAAAACTT---AAT
s caeRem4.Crem_Contig0  1445798 38 -  4500979 ------ATC---AGAGGTA----------------TGAGAA---CTCATTTCAAATACTTTTAAAC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622   192309 34 +   386604 ------ACC-GAAGAGGTA----------------TA---------CTTTCTAAGTTCTTTCAAAT
i caeSp111.Scaffold622  I 8 I 7
s caeJap4.Scaffold18206   85110 59 +   129353 TTCAGAGTC---AGGGGTAGGCAATTTTCTAATCATGAGAAAACAGCCCTAGAAATTGTTTC----
i caeJap4.Scaffold18206 C 0 C 0
e caePb3.Scfld02_0      2758768 46 +  4147112 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=40592.000000
s ce10.chrX             4514167 168 + 17718866 GATTTAATTTTAGCAGGGGTCATACAAATGCCATCTTTGTGGACAGTGCTTCTACCGTGGATGTGGATTAGCAAGTCACCTGCGACGACACGCACCAGTCACATTTGACTGTGAGCATTGTGCTTACACGTGTAAGCACAAATATGCGTATGATCGTCATCTGTTGCA
s caeRem4.Crem_Contig0  1445836 167 -  4500979 -ACTTTTCAATTCTAGGGCGAATACAAGTGCACTCTTTGTGGACAGGAATTTATCAGAGGATGCGGACTTGCAAGTCACCTTCGTAAGCATGCTCCAGTCAGCTTTGATTGTTATCACTGTGGTCATTCGAGCAAGTCCAAGCATAAACACGACAGACACGTGCTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   192350 166 +   386604 --CTTCTCATTTACAGGGTCACTACAAGTGTCACCTCTGCGGGCAGTTGTTCTATCGAGGTTGCGGACTGGCTAGCCATCTCAGACGACATGCACCGATTACCTATGACTGTAATCACTGCAGATACTCTTCGAAACACAAGCATGCACTGGATAAACATGTAGCTTC
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2758814 168 +  4147112 GGTTCATGTTTTTCAGGGAGCATACAAATGCGATGTGTGTGGCCAAACGTTCCTACGAGGATGTGGGTTGGCAAGTCATGTAAAGAAGCATACTCCTGTTGTCTTCGAATGTGCTCAATGTGACTACCGATGCAAGCATAAACCTTCCTACGAGAGACACTTCGCAAC
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold18206   85169 162 +   129353 ------TTAATTTCAGAACGGTTACTCGTGCCCACTCTGCAAACAGACATTCCAGCGAGGATGTGGATTGGCGAGCCATCTGCGAAGACATGCTCCTGTACTATTAAAATGCACTCTTTGTGAATACACATGCAAGCACAAGTACGCCTATGATCGTCATATGGTGCA
i caeJap4.Scaffold18206 C 0 I 400
e cb4.chrX              9802939 6457 + 21540570 I

a score=-2968.000000
s ce10.chrX             4514335 77 + 17718866 ATCGCATCCTGAG----CTCGTGGAATCTGGCCCACTAGTT---CGAATGTTTAAGAATG------AAGATGAA-------GATGCTCCAATGCCGA
s caeRem4.Crem_Contig0  1446003 93 -  4500979 TGCTCACGCCGATTACGTTCGCCGAGGCGGAATCCTTCGTGGTCCAATTATTCGTAA-AGTCA---AAGAAGAATTGCCAAGTGATTCCAGTGATGA
i caeRem4.Crem_Contig0  C 0 I 1194
s caeSp111.Scaffold622   192516 77 +   386604 TGCACACACGGAA----GTCATTGAATCCGGACCACTTCTG---CCGTTAGACACAAGAGTCATTAAAAAAGAA-------------CCTTCGCTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2758982 80 +  4147112 GACTCACATGAAC----ATTATGGAATCTGGACCACTCGTG-----GTTATCAATGATGGTTAC--AAAGCGAATC------CTGTTCCTATTCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   85331 400 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I

a score=-13578.000000
s ce10.chrX             4514412 219 + 17718866 TTCTCGAGC------------------------GAGAAGCAGAT-----------------------GTATCC---------------------------GATGATGCCGTCAA-----------------------------------------------------------------------------------------------------GTATGAGGCACTCTC-------------------------TTCTTTC---------------TC---------GGAA---CCTGAACCAATC-------------------------------AGCTACAAATGTCCATTGTGTATATCCACGTTTGGCAGTCACGCTAGAGCAGTCTACCATATTTTGTCACACCGTGTCAAGTTGTATCAAGCACCGAAAAGCCTGAAATTCTTCTCGAGGAAAACAATGCAAGCTCTTG
s caeSp111.Scaffold622   192593 339 +   386604 CACCGGAAA------------------------ATGAAgcagaa---ataaaaga------------agagcCT--------------------------GAATCTGACGTTGA-AGTGAAACCTCAAATC----------------AAAG--------CCACGCGCAGAGTCgtcaagaag---------aagacactGAAAAGAAAGCGGACGGGACCAGGAACTTCG-----ACAAAAAAGCGT--------CCATTCC---------------TCAAAAAGCCAAGAA---TCATAAGAGAGC--------TCCCTGCTATTACAAAGAAAGATTCGTATGGGTGCCCGCTTTGTCCGGCTCAGTTCAACTGTCATCAGCGTGCTGCTTTTCACATCATATACCACAGACAACAACTGCATCTAGCTCCCACATATGCTAAGTACTTCTCCAAGAAGACAAGTGATCAGAGAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759062 474 +  4147112 TGCGAGAAATCAAACGTGAAATTGTCGAGgaggatggagaagaagatatGGATGAGGACGATCACGTAGAGCCTCCGAAAACAGCAGCTCCTATCATAACGAAGATGTCACTAAGGGCTACACCTAAAGTTACTCCGAGAATGGCAGAAAGAGATTGTCCCCCGC---GAGTCATAGCGAAGGCCAAGCCTAAGTTGGTGAACAACGCAACATCAGTAGCAGGACCTTCAGAACCACCAAAAGCTGTAAACCTTCCCATTACCCGGACTGCACCTGTTCCAATCGTCAAGAAGACCTTGAAGGAAGCTGTGGTAATACCTGctatttcgaaaaaggaaGATTATACATGTCCAATGTGTCCTGAACACTTCAGCTGTTCCCAGCGCATGGCATTCCACATTATGTGTCACCGAACGAAATCACATCAAGCACCGCGAGGTATTAAGTATTTCTCAAAGAGGCTGGGAGAACGACGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   85331 400 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=6697.000000
s ce10.chrX             4514631 113 + 17718866 GAGGATTTCGTTTAGAGTCGCAACTGATGATCAAATGGAGATTACAATAC-GATAATCGAAGTGTGGACGAGAAGCGAACACGGTTATGGCGGTATATGGAAGAAAATTTTGGA
s caeSp111.Scaffold622   192932 113 +   386604 GTGGATTCAAGATGAGGTCGAGAGAAATGCGACGCTGGAGAATGACTACCAAAAAACATAGTGCTCTA-CAACGAAGAGATCGGGTACTCTGGCACATGGAACAGAACTTTGGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759536 113 +  4147112 GGATGTTTAAGCTCCGGTCACCTCAAATGAAGAGATGGAGACTGAGTTTC-GACAACAGATCGGTGGATCAGAAAAGAGCACAACGTTTATGGCATATGGAACTCAACTTTGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   85731 113 +   129353 GAGGATTCCGACAAGGATCTCATTCAATGGTCAGGTGGCGTCTGAACTGT-GAACGTCGAACGATACCACAAAGACGAGCATATCTGTACAAGTACATGGAGGAAAACTTTGGA
i caeJap4.Scaffold18206 I 400 I 1298
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=-5680.000000
s ce10.chrX             4514744  66 + 17718866 CAT-----------------------------GAACATCT--------GAAGCA----------ACCA-AAGCTGGAAAGT-----GATAATCCTTCGAC----AAGTAGCTCTTTTGAGTGA
s caeSp111.Scaffold622   193045  60 +   386604 CAC------------------------------AGTATAC--------GCAACACA--------GTCG-AGCCCAGAGATC---AGGATAAAACATTGGTTTTGAAgtaa-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759649 119 +  4147112 CATTCTATCCCAAGCTCCAGActtccaattttgaatataCCTGAGTGAGTAACAAATGATGCGTGTCACAGTTTAGTTATctagaatataaaaaatcagC----AAGTGAAACTGTTGATTGA
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold18206   85844 1298 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=-537.000000
s ce10.chrX             4514810 64 + 17718866 GTTTTTTGCCCAACGAGCTTTTGATAGAAAAAAATAAT--------GTTAGAAACCATGAGTCACTTTTTCA
s caeSp111.Scaffold622   193105 65 +   386604 gtttttggaaaaatcaatttctttgacaattcaatatttcagGTCCGctaaaagaaagaagtctC-------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2759768 100 +  4147112 I
e caeJap4.Scaffold18206   85844 1298 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=-2333.000000
s ce10.chrX             4514874 53 + 17718866 TTTCAAAATTAATATACA------------------ATACTAACCACATCT---TTCAGATCACAAACAAACTT
s caeSp111.Scaffold622   193170 27 +   386604 -----AAATCGACATTGT-------------------TATCAGAGGCGTTC-----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759868 74 +  4147112 ttccaaaattaagaTAATTGATAACAACTTTGATGAATAACAGTTGCATTTCTTTTCAGGTCGAGCACAAGAGT
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold18206   85844 1298 +   129353 I
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=-3369.000000
s ce10.chrX             4514927 19 + 17718866 GAACGATTCTTCG------------------ATAATC
s caeSp111.Scaffold622   193197 14 +   386604 -----------------------AGAAAAGCGTATTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759942 37 +  4147112 GAATGGTGAAGTGAAAAACTCCAAGAAGAACATCACc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   87142 17 +   129353 GAACGGTTGCG--------------------ATGGTC
i caeJap4.Scaffold18206 I 1298 I 3
e cb4.chrX              9802939 6457 + 21540570 I
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=717.000000
s ce10.chrX             4514946 3 + 17718866 AAA
s cb4.chrX              9809396 3 + 21540570 AGA
i cb4.chrX              I 6457 C 0
s caeSp111.Scaffold622   193211 3 +   386604 AGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759979 3 +  4147112 cga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   87162 3 +   129353 AAA
i caeJap4.Scaffold18206 I 3 C 0
e caeRem4.Crem_Contig0  1446096 1194 -  4500979 I

a score=89018.000000
s ce10.chrX             4514949 257 + 17718866 AAGAAACTTGTGATGAAGTGTGGTACTGTTTTCGGTCAAAGACTCATTCACGACAACACCCAATATTATTTGTGCCGCAATTGCCCATACGTTTCGTGGAATGTTTCTTCACTGTGGCGACATTTCCGTCATCATATTCAAAAATCGAAACAATCTTGGACGTGTATCGCATGCTCATACAGCTCATCGAGCCGGGTGAAAATTGATCTACATGTGAAAATGCATAAGGAAATGCCGGAAATTGATTTGGAGGTAA---G
s cb4.chrX              9809399 260 + 21540570 AAGGATCTTATGGTGGGACCTATGATCAACTACGGACAAAAAATGATCTATGAgaagaaaatccattttctttGCTCGCAGTGCCCTTACGTCAACTCGGATATTTCGTCTCTCCAGCGCCACTTCCGCCATCACATGCACGAATTCAGGCGGACCTGGAGTTGCACCCAGTGCTCGTACAGTTCTTACCATTTTGCTGATGTCTATAAGCACGTCAAACTTCACATGGATATTCCAGAAAGTGAAACAGAGGTAACCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1447290 260 -  4500979 AAAAATCTGTTCATGAAATGCGGCACACAATTCGGACAAAGAGTTATCTTCGAGACGTACAGCTACTACCTCTGCAAAGATTGTCCATACGTCACTTGGAACGTTTCATCGCTTTGGCGTCACTTCCGACATCATATTCAACGTTCGATAATGTCATGGACATGTGTATCATGCTCCTTCAGCTCTGCCAACCGAGTGAAGGTTGACCAGCATGTAAAACTGCACAAGGAAATTCCAGAAACGGATTTGGAGGTGAGTCG
i caeRem4.Crem_Contig0  I 1194 C 0
s caeSp111.Scaffold622   193214 259 +   386604 AAAAACTTACGAATGAATGGTGGTTTGGATATTGGCCAGAAAGTAACTTACGAAGGCACACACTACTACTTCTGCCGCGAATGTCCGTATACCAGTTGGAGCGCTTCATCTCTTTGGCGACACTACCGCAACCACACAAATGCTTCACCACAGTCCTGGACGTGTATTTGTTGCTCCTACACTTCGAACAACAGAGTCAAAGTGGATTCTCACGTGAAACTTCACAAAAGGATGCCTGAAAGCGAATTAGAGGTAA-TTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2759982 257 +  4147112 aagaagttgaaaatgagatcTGGTGAAGCTTTTGGACAGAAAATCACTCACGAAGGCACGCATTACTACCTTTGTCGACATTGCCCGTTCACCACTTGGAACGTTTCTTCCCTCTGGCGCCATGGTCGGAACCACGTTCAACGATCTAAACAAGGATGGACTTGCATATCTTGTTCGTTCACGTCTTCCATTCGAGTCAGAGTTGATCTCCACGTAAAACTTCACAAAGAATTTGCTGAGACTGAACCTGAggtaa---g
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   87165 254 +   129353 AACAAGCTGCGAATGAAGAGCAACATTGCGTttgcgcaaaaaatgcttgTCGACAATTGTCAATTCTACTTGTGCCGAAAATGTCCATACACCACGTGGAATGTCTCATCTCTTTGGCGCCACTTTCGTCATCACACCCAATTGTCGAGAAGGTCGTACACGTGTGTTGCCTGTACGTTCAGCTCTATACACATGCGCAGCATTGTGCAGCACAGCAAAATGCATAC---TACGCTTGAAAATGATACTGAGGTAG---G
i caeJap4.Scaffold18206 C 0 I 1900

a score=6136.000000
s ce10.chrX             4515206 122 + 17718866 AAATATATCATCATAACCaaaattaaataattttatttaaaaaaaaaatttCAGTTTGCAACTTGGCTTCGCTATGAACGAAGAATCAACAAGAACGACTTGAATAAACC--GACTAACAAAAA
s cb4.chrX              9809659 107 + 21540570 GATT--------AGTACATTATCTCAAAACctt------acaactttttttcagttcaaacgTTGGGTTCACTACGAAAACAAAATGGACAATGCTTAT---AGAAAGATGAGTCTAGTGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1447550 116 -  4500979 AATGC------AGAAACAGTAACATGAGAAATTAATC--AAAgtatattttcagtattccCATTGGCTTCGCTTTGAGCGCAGAGTCAACAGGACTGACTTGAATAAGCCGACGCCATCAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   193473 109 +   386604 AAAGC------GGAATCAAAGTTTTGAGTAAAC------GTTAT-TTGTTTCAGTATTCTAACTGGCTTCGTTACGAAAGAAGAGTCAACAAGGTGGATCTGGATAAGCC--TGCTCCCAAAAA
i caeSp111.Scaffold622  C 0 I 253
s caePb3.Scfld02_0      2760239 107 +  4147112 aaaga------aaaaactg---ttcgaTACATC------AATACACTATTTCAGTACCTCGCGTGGGTTCGCTATGAACGAAGAACGAATAAATCGGATTTGGACAAACC--CGGGAGCAAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   87419 1900 +   129353 I

a score=546.000000
s ce10.chrX             4515328 1 + 17718866 A
s cb4.chrX              9809766 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1447666 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 1571
s caePb3.Scfld02_0      2760346 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e caeSp111.Scaffold622   193582 253 +   386604 I

a score=-918.000000
s ce10.chrX             4515329 6 + 17718866 AAGAAA---
s cb4.chrX              9809767 6 + 21540570 ---CAGAAC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2760347 6 +  4147112 ATGCAA---
i caePb3.Scfld02_0      C 0 I 1532
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e caeSp111.Scaffold622   193582 253 +   386604 I
e caeRem4.Crem_Contig0  1447667 1571 -  4500979 I

a score=248.000000
s ce10.chrX             4515335 24 + 17718866 CCCGATGGAGGAAACGGTTCAAAT
s cb4.chrX              9809773 21 + 21540570 C---GTAGAGCCAGCGGTCCCGAT
i cb4.chrX              C 0 I 4136
e caePb3.Scfld02_0      2760353 1532 +  4147112 I
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e caeSp111.Scaffold622   193582 253 +   386604 I
e caeRem4.Crem_Contig0  1447667 1571 -  4500979 I

a score=0.000000
s ce10.chrX             4515359 220 + 17718866 CACAGTGATATGAGAAGTCTTCACGCATTTCTTAGTCTTAAAAATTCTAAGAACAATGTTGTCAAACACGATATCGATGCTCCAACTTTGCACCCATTATCCCCAGCGCCCAAGCTGGTCGCGATGACTCAATTTGACTTCGGAGAAATTGTCACTTACAAAAGCGTCAATCCGCTGCACCAAATCAACAAGAACAATAGCAATCCGACGGTCCTGCCGA
e caePb3.Scfld02_0      2760353 1532 +  4147112 I
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e cb4.chrX              9809794 4136 + 21540570 I
e caeSp111.Scaffold622   193582 253 +   386604 I
e caeRem4.Crem_Contig0  1447667 1571 -  4500979 I

a score=-2012.000000
s ce10.chrX             4515579 219 + 17718866 ACAAGCGAAATAGCATTAAAACCAGTAAAAG-TGATACTCAAATCGCGCTCAGCGTTAA-----------------------------GCAG-TCTAGTAGTATGAAGATGGT-------------GAAAGTTTCTCCTGGAAAA-----GTTTATCAGCTTCCTAAGACGTCCAAAT------------TTTACCGACCTG--------AATCACCT--GACTCATTAGCATCAAATAATTCTGCTCACGGAGACGAGATTGAGTCAACGTCTTCAGAT-------------------CAATTCCAAC
s caeSp111.Scaffold622   193835 296 +   386604 AGAGGTGCAATGAAGTATAAACCCGGAATGGCTCAAACACATATTGC--TCAGCCGCAAAGTTCTTCATATGGTTTGCAACCGAAGATGCAGATCAAAAAGCCAGAAAGTGGTTAtctgaatgagaaaaaacctCTTCTGGATAATACCCATTCAT-----TCTCGAAACCTGCAAATCCTTCAACGAAGTTTATCAAAGTGGttacaaaaatcaaagaagaacCATCCACATCCACTTCTTCATCTTGTG------ATTCTCAACCAACATCTTCAAATGCAGCTGGATCGGAGTCATCTACACCTGG
i caeSp111.Scaffold622  I 253 C 0
e caePb3.Scfld02_0      2760353 1532 +  4147112 I
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e cb4.chrX              9809794 4136 + 21540570 I
e caeRem4.Crem_Contig0  1447667 1571 -  4500979 I

a score=948.000000
s ce10.chrX             4515798 8 + 17718866 AATCCGTG
s caeRem4.Crem_Contig0  1449238 8 -  4500979 AATTAGTG
i caeRem4.Crem_Contig0  I 1571 C 0
s caeSp111.Scaffold622   194131 8 +   386604 ACTCCGCG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2760353 1532 +  4147112 I
e caeJap4.Scaffold18206   87419 1900 +   129353 I
e cb4.chrX              9809794 4136 + 21540570 I

a score=5782.000000
s ce10.chrX             4515806 62 + 17718866 AAAGTTCCAAAGTACGAAGACTTTTTGAACATGAAGCCAGTTATGCCATATTTCCAAAAACA--
s caeRem4.Crem_Contig0  1449246 59 -  4500979 AAA---CCGAGATACGAAGATTTTCTCTATGTGAAGCCAGTGTACCCGGATTTCCAAAAAGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   194139 58 +   386604 AGC---CGAAGAT-TGAAGACTTCCGCTACACTGAACAAGAACAGCCAGGTTTCCCACAAGT--
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold18206   89319 61 +   129353 AGAGCGCCGAGATATGAAGACTTTCTTTATATTAAACCGG---AACCAGCGTTTCTCAAAGAGA
i caeJap4.Scaffold18206 I 1900 C 0
e caePb3.Scfld02_0      2760353 1532 +  4147112 I
e cb4.chrX              9809794 4136 + 21540570 I

a score=2237.000000
s ce10.chrX             4515868 195 + 17718866 ACGACATCCACTGGAAGCGATTGCTATGTACGAAAAGGCAAAAAGGGAATACGAAAAGAA----------------TCACTGTTTC-------C--CGAATCTTCCAATTTTCGAATTCAACATTGAGTACAAGAACTTGCATC--CACTCGCCAAGGCACAGTATGGGAAAAACAATATGAAAGAGTATTTTTTGAATGAAATGGAAGTAGAGAGTAAGT--------------------------------T
s caeRem4.Crem_Contig0  1449305 204 -  4500979 GCGACACCCATTGGATGCAAATGGAAGGTATCAAGTGGCCATGCGAGAATATGAGAAAGCTCTGGAAATTCGACAAAGACAAGGCAGTCTCATC--CCAGTTAGT--GACGATCAATTCAA-----GACTCCACTTCCAGTGACGGCAGATACTTTTGCTCC---------ACACAGACCAAGAGAATATCTAATGAGAGAGTTTGCAATTGAAAGTAGGt--------------------------------t
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold622   194197 224 +   386604 ACGCCATTGTGCTGATGCCTGGGATTGCTGTGTCAGAGCTAAGAAAGAATACGAAAAAGC----------------TGTCAATGCA-------C--CTGTTTATCCTGTTGCTAAAATCAA---TTATCCAAAAGTTATGTTAC--CTGAGGCTATTGCTCAAATCGGAAGAAACAATATGTTGGAGTAtatcaaaagagaaactgaGATTGAAAGTGAGTAATAATATTAAGAAACAGTAGAGAGAAATGCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2761885 192 +  4147112 ACGGCACCCTATTGAAACGTACGATTTATTCGGAAAAGCTTGGGAtgaatacaagaaaaa----------------agcCAATGCA-------CCACCGGTGGTC--AATGCTGGAATCAA-ATTCATCCCCAACCTCAGT--C--CAATCGCTCAAGCACAAATTGGAAGAAACAATCCAAGAGAGTACTTACTAAGAGAGCTCGAGatagaaagtgagt--------------------------------t
i caePb3.Scfld02_0      I 1532 C 0
s caeJap4.Scaffold18206   89380 193 +   129353 --GGCATATTTGTGAGGCTAGCGGTTTGTATTATGTTGCAATGGAAAAGTATAAAAAGGA----------------GATGAACAAG-------C--CAAAAGTTGCAAACGCCGGTATCAATATTCCATACGAGGATCTGAATC--CAGCAGCTAAAGCTCAATACGGACGCAGTAACCCAAGGGAATACTTGATAAGAGAGATGCGAATTGAACGTATGT--------------------------------T
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9809794 4136 + 21540570 I

a score=-9255.000000
s ce10.chrX             4516063 45 + 17718866 AACGAGTC-----TTCA---------------ACGAAGTACATATTCTGAAAAAAACTAGAACAT-----
s caeSp111.Scaffold622   194421 65 +   386604 TTTTGGTTCTCAGTCCGCATGTTGTCATGACGACAGAGTAAAGCCTAGGTAGTAAACAAGAGAAG-----
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2762077 30 +  4147112 ttttagtT-----TCCACAAGT------------------------------TAATTCAGAAGGA-----
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18206   89573 25 +   129353 ---------------------------------------------TATGAAACAAAATATtatataattt
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9809794 4136 + 21540570 I
e caeRem4.Crem_Contig0  1449509 37 -  4500979 I

a score=50923.000000
s ce10.chrX             4516108 286 + 17718866 TTTTA----------------TCAAATG------GCTCTTTTTCAGAATCTCGCGAATGCACTGACTGCCCAT---TCAAACACAACGATCTGCAGCAGTTCCGTCTCCACCGTGACAAGCATTTCTACGGTGGATCACACACCTGTCCGGAGTGCAACTATTCATCGAACAACCATAATCAAGTGGTCGAGCACACGTTTGTGGATCACTATTTGAGCGATGTGAGATTGGTTGAAGGGCTTCCGTCTTCGGATTCG---------GAGGACGATAATATTCCGGTACCT---------CCTGATACTCCGCAGCGGAAGAAAAAAG--C
s caeRem4.Crem_Contig0  1449546 270 -  4500979 tttta--------------tCTCCACTT---------CTGTTTCAGGATCTCGTCGCTGTGCGGATTGTCCAT---TTAAGGAAGACAACTTGGAGCGATTCCGCAAACATCGGGATAAGCATCTCTTGCCAGGCCGTCACAAATGCAAAGAATGCAACTACTCTTCTTTCGACTATCATCAAGTTCAAGAGCACATGTTTGTAGATCACTATCTGAGTGATATCAAGCTATTGGAAGGACTTCCATCGTCGGAT------------GAAGATGA-------CTAC--------------TCACCTCCACCACAGCGTAAGCCAAAGG-C-
i caeRem4.Crem_Contig0  I 37 I 38
s caeSp111.Scaffold622   194491 308 +   386604 TCTGACTTGCTTCTATGATCCTCCAGTTCAATAAACTTTCTTCCAGATTCTCGAGAATGCGCGGATTGTCCTT---TCAAATGCAACGACATTGTGAAGTTCCGTCGCCATCGTGACCGTCACTATAACGGAGGATCTCATGTCTGCAAGGAATGCAACTACGCTTCATACAATTTCCATCAAGTAAAGGAGCACATGTTTGTGGATCACTATCTGAGCGATGTCAAGATTATTGAAGGATATCCCACGTCTGAATCA---------GAAGATGAAGCTCCGCCACCACCT---------CCGCCGCCGCCGCCACCAAAGCCAAAGAA--
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0      2762112 296 +  4147112 TTAAA-------------------AGTT-------ATCTTTTCCAGGATCTCGTGAGTGCCCTGATTGCccat---tcaaaaactatgattTGAAGAAGTTCCGACTTCATCGAGATAGGCATTACCACGTTGGGCGCCACAAATGCAAAGAGTGCAGTTATTCATCTCACAACCCACATCAAGTACAGGATCATATGTATGTTGACCATTATCTCAGCGACGTTCGACAAGCTGAAGGACTACCATCATCTGAatcagaagag---gaagaggaagctCCTCCACTAGTTGATGAATTCGTGCCAGAACCGCGTCCAAAGCAAAAAA---
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18206   89598 276 +   129353 --------------------atttattt---------ctttttcagGTTCTGGTCAATGCGCTGACTGTCCGTATCACGAGTACAAAGACCTGGCTAAATTTCGCTTGCACCGTGACAGACATTACTTTCCGGGACCAATCAAGTGTAATGAATGCAACTACTCTGCGTATGACAGAACGGAAGTCAACTACCACATGTACTATGATCACTTTATGACAGAAGTGAGGGCAGTGGAAGGAATATCGTCATCAGAATCGGAGGAATCTGAAGTTGAAGAG---------------------GTACCGATTCCACAGCCGGAAAAGAA-----
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9809794 4136 + 21540570 I

a score=-1071.000000
s ce10.chrX             4516394 27 + 17718866 -----GCCG-AAGCGTGGCAAACGTCGTG---GCTG
s caeSp111.Scaffold622   194799 30 +   386604 -----GCGT-AAGGGACGTAAGCGTCGTGCTAACTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2762408 22 +  4147112 --------------GGCGTAGACGTCGTGCTAATTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   89874 30 +   129353 GAAACGCGGAAAGAGGCGT---CGTCGTGCGTG---
i caeJap4.Scaffold18206 C 0 C 0
e cb4.chrX              9809794 4136 + 21540570 I
e caeRem4.Crem_Contig0  1449816 38 -  4500979 I

a score=-13264.000000
s ce10.chrX             4516421 119 + 17718866 GTAAAGa----ttatattttattaaattttatcaagtttttttaaag--gtaatgtttaaatttattttaaatttaa---atttatttttgttt----ct-----------ttttttttca-------------atta-------attgtttttaaGTTTTTC
s caeRem4.Crem_Contig0  1449854 131 -  4500979 ---GTAC----TGAC-TATTGATCGGCTTCGaacatctttttttcca--atcatGTT---GTTTTACTTTGTTCTCA---CCCAAACTcactttact-gt-----------tttattttcatgcttaagcttggattgtta----cttgtttttatgttttta
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622   194829 119 +   386604 GTGAAGCAGCAAGCT-TGTTAAACTATCCACATAATTTCTCTTATCA-AATCAC-------TTATTCCTGGTT-------ACCAAATTCCgttt----at-----------tttgtttatt-------------gTTGTTAAAAACTCCCGTTTACTTatttg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2762430 127 +  4147112 GTAAAAC----ATAC-TGTTActctttttcatcacttttatTTATCacgctcat-------tttttttccgttttcatccCCCAATTTCCCgttatagat-----------tttttttcca-------------attgttaCAACCATATTTTCACTCAATTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18206   89904 116 +   129353 GTAATAC----TTTCATCTTGCTCA-----------CTTTAtttccatgatctt-------ttttcattttcttttt---atcagactctgttt----ctgaaacttcctgtttttttcta-------------aatttta----cttgt-ttcatgtttttc
i caeJap4.Scaffold18206 C 0 N 0
e cb4.chrX              9809794 4136 + 21540570 I

a score=-12829.000000
s ce10.chrX            4516540 245 + 17718866 AATGTTAGGTTTGTCGTTTAAT------TTTTTTCAAA-TTTCTAATAATATTCCCTTCCCTTCCCATCCCCGCTCAAATAGCTGCCTCATAGTTTAGTAAATTTCTAAATAAT----------ATTATTTCAATACCATC---ACATATTG-----------TCAGCGCTTTCTGTCATTTTTTTAATTTTCATTCATCCTGGTACCTCAC--TTTTGGCACGTGTCCAAC--AACCACCCTGACATCAACCCACCCGGACTTTCTCGACTAGGTTTTT
s caeRem4.Crem_Contig0 1449985 236 -  4500979 aat-------------tttaattcccagtttttccctgattctctttttcctctttgtttttaactgattatatttttat-gcCATTACAT---------TATTCCTACACAATCCCGGAGGtaattatttccattttccgaATGCTCATCCATTTG------TCATAGTATTCACCCATATTGTCACTTTCCA-------AGGTACCTCTG--TTGA---ACATGTCCCATGATACATCTCTGGCACCA-TTCCCCCGGCTTTCTGATTAtaggttt--
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  194948 195 +   386604 ----------------tttgaa------tttttcatca--tcctggtattatttttctttctgtcaaattactttctt-----------------------------------tcc--------atttctcccGCGTTCTTGTCGCATATTGTCATGAGGAgctgaaagctctcaat--tatttcgttttttc--------tggtACCTCTTTGTTTTGTCACGTGTCG-----TATCTCCTTGACATCA---ACCCTGGCCTTTCACAAATAGGTTTTT
i caeSp111.Scaffold622 C 0 I 481
s caePb3.Scfld02_0     2762557 190 +  4147112 ----------------TTTAGT------TAGTTTACTG-TTTCTACCCACGTCCTTTCTTTTGACAATCCTTTTGTTT--------TACA-----------------ACACAATCC--------attcctctttctttctt---gCATATGGACATGAAAGCTTTTTAGTTTTCAGC-ATATTTCCACT------------TGGTACCTCTT--CTCAGTGACGTGTCC-----TAAACCGTTCA----------CCCAATCTTTCAT-CATaggttttc
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9809794 4136 + 21540570 I

a score=-23453.000000
s ce10.chrX            4516785 467 + 17718866  
s caeRem4.Crem_Contig0 1450221 456 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2762747 390 +  4147112  
i caePb3.Scfld02_0     C 0 I 44
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=333.000000
s ce10.chrX            4517252 21 + 17718866 AACAAGCCGGATCAGACTAAC
s caeRem4.Crem_Contig0 1450677 19 -  4500979 GAAAAATCTG--CAGAATAAC
i caeRem4.Crem_Contig0 C 0 I 27
e caePb3.Scfld02_0     2763137 44 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=0.000000
s ce10.chrX            4517273 30 + 17718866 ACGGACTAAACTTAGACATAGATAAAGTGT
e caePb3.Scfld02_0     2763137 44 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I
e caeRem4.Crem_Contig0 1450696 27 -  4500979 I

a score=703.000000
s ce10.chrX            4517303 10 + 17718866 TGAAAAAGAA
s caeRem4.Crem_Contig0 1450723 10 -  4500979 tgaaaaacaa
i caeRem4.Crem_Contig0 I 27 C 0
e caePb3.Scfld02_0     2763137 44 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=-7437.000000
s ce10.chrX            4517313 176 + 17718866 CCTATATTG--ACATGTGAGTAGCTAGGACTGGTCTGAATACATCAGAACAGGAAAAAATAACAGAATATCTCTTACCAAAACTATAAATAGAAAAAAAAGTTGATCAAGGCTGTAGCAGTTCAGAGTAAAGCCAAAGTAAGATATTGATAAGGAGAGTTTCTCAGAGTAAAACCATG---
s caeRem4.Crem_Contig0 1450733  93 -  4500979 --tattttg---caTGTT-GCAAAcagcagaaaaaaaattatattgaaacAG----------------AGTTAGT-------------------AAAGAAGT-----------------GTTCTG-------------CATGATGGAATTGatg-----------------attctcaaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2763181 107 +  4147112 CTTGTTTTGCAACATTTT-ATAATTATGATCAGTTTAATTGAAGTAACACA-----------------AGTTTTT-------CTATGGAATTTAACAGGAAT-----------------GTTTTG---------------GGATCTAGATGAGG--------------TAAAATCACA---
i caePb3.Scfld02_0     I 44 I 172
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=220.000000
s ce10.chrX            4517489 84 + 17718866 TGGATTAGCAAAAAATGCTGAAACTATTTCGTCGAGCCATTCCAATTCAGAAATCTTACTGTCAGATTTTTCGACA--CTTTTTGA
s caeRem4.Crem_Contig0 1450826 67 -  4500979 ------aacaagaaatatagaaaacgGATCACtgaa----------tttggagtttttcggTT---CTGTACAacaatctttttga
i caeRem4.Crem_Contig0 C 0 I 12
e caePb3.Scfld02_0     2763288 172 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=0.000000
s ce10.chrX            4517573 29 + 17718866 CTGTCGCATATCCAAGACGTTCCTGTTTT
e caePb3.Scfld02_0     2763288 172 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I
e caeRem4.Crem_Contig0 1450893 12 -  4500979 I

a score=275.000000
s ce10.chrX            4517602 115 + 17718866 TGAATTATACCGAAGATTTTCGGAATTCATTTGG---CTTTTTCTCTGACTTTTCATCTTTTATGGAAAATCTAGTAATTCTGGCTTCTTCCAATTCTTTACAGTTTGTTTGAATTTT
s caeRem4.Crem_Contig0 1450905 112 -  4500979 taaaatttaccaaaaattat-----tttatgtGAAGTTTTGTTCTTTAGAGTTCAATCAAGTAGAAAAAGTATTGCCAATTTGGGTGTTTC-AATCAGATGTAATATATTCGATAAAC
i caeRem4.Crem_Contig0 I 12 C 0
e caePb3.Scfld02_0     2763288 172 +  4147112 I
e cb4.chrX             9809794 4136 + 21540570 I
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=291.000000
s ce10.chrX            4517717 3 + 17718866 CTG
s cb4.chrX             9813930 3 + 21540570 CTG
i cb4.chrX             I 4136 C 0
e caePb3.Scfld02_0     2763288 172 +  4147112 I
e caeSp111.Scaffold622  195143 481 +   386604 I
e caeRem4.Crem_Contig0 1451017 0 -  4500979 C

a score=-4529.000000
s ce10.chrX            4517720 6 + 17718866 GATACG--------
s cb4.chrX             9813933 6 + 21540570 --Caca---aa---
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1451017 7 -  4500979 ----CAAGTAA---
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0     2763460 6 +  4147112 --------gaagag
i caePb3.Scfld02_0     I 172 C 0
e caeSp111.Scaffold622  195143 481 +   386604 I

a score=15643.000000
s ce10.chrX            4517726 66 + 17718866 -AAGCATTTTATTACACAGGTA--CAGAAATGG-TTATCTCGAATAAAT--ATAACACTTTAGTACGGATAG
s cb4.chrX             9813939 65 + 21540570 aatcgttttcattACACAGGGG--GAAATGGATGATAGAtggaataaat-----atttttgaaaatggagtA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1451024 70 -  4500979 AGAAGCCTTTATTACACAGGTAACAAAGTAAAT-ATAGATTGAATAAATA-AGAATATTTGGAAGCGGACAG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  195624 68 +   386604 -aagcGGTTCATTACACAGGTA--CAAATAATG-ATAGCTTGCATAAATATATAAGATTTGAGAGCGGATAG
i caeSp111.Scaffold622 I 481 C 0
s caePb3.Scfld02_0     2763466 67 +  4147112 -aagcCTTTCATTACACAGGTA--CAGAGAGTG-ATAGcttgaataaatataaaata-aaaagagcGGATAG
i caePb3.Scfld02_0     C 0 C 0

a score=493655.000000
s ce10.chrX             4517792 872 + 17718866  
s cb4.chrX              9814004 841 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1451094 833 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold622   195692 840 +   386604  
i caeSp111.Scaffold622  C 0 I 70
s caePb3.Scfld02_0      2763533 843 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739    9772 895 -   130595  
i caeJap4.Scaffold17739 N 0 C 0

a score=-1071.000000
s ce10.chrX             4518664 21 + 17718866 ---GTAGTAATTGTTACGTGTTTT
s cb4.chrX              9814845 20 + 21540570 ----agaaaattttaatggaTTCT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2764376 13 +  4147112 ------GAGAT-----CGTGTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   10667 24 -   130595 gaaaacataatttttacATGCATT
i caeJap4.Scaffold17739 C 0 I 12
e caeSp111.Scaffold622   196532 70 +   386604 I
e caeRem4.Crem_Contig0  1451927 51 -  4500979 I

a score=354.000000
s ce10.chrX             4518685 5 + 17718866 TTGAA
s cb4.chrX              9814865 5 + 21540570 TCAGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2764389 5 +  4147112 TAGGA
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold17739   10691 12 -   130595 I
e caeSp111.Scaffold622   196532 70 +   386604 I
e caeRem4.Crem_Contig0  1451927 51 -  4500979 I

a score=186.000000
s ce10.chrX             4518690 25 + 17718866 TAAAAaaacaaacaaactttgtaat
s cb4.chrX              9814870 22 + 21540570 T---GTTTCAAAtaagttttgaaat
i cb4.chrX              C 0 I 33
e caePb3.Scfld02_0      2764394 26 +  4147112 I
e caeJap4.Scaffold17739   10691 12 -   130595 I
e caeSp111.Scaffold622   196532 70 +   386604 I
e caeRem4.Crem_Contig0  1451927 51 -  4500979 I

a score=0.000000
s ce10.chrX             4518715 575 + 17718866  
e caePb3.Scfld02_0      2764394  26 +  4147112 I
e caeJap4.Scaffold17739   10691  12 -   130595 I
e cb4.chrX              9814892  33 + 21540570 I
e caeSp111.Scaffold622   196532  70 +   386604 I
e caeRem4.Crem_Contig0  1451927  51 -  4500979 I

a score=182.000000
s ce10.chrX             4519290 2 + 17718866 TA
s cb4.chrX              9814925 2 + 21540570 TA
i cb4.chrX              I 33 C 0
e caePb3.Scfld02_0      2764394 26 +  4147112 I
e caeJap4.Scaffold17739   10691 12 -   130595 I
e caeSp111.Scaffold622   196532 70 +   386604 I
e caeRem4.Crem_Contig0  1451927 51 -  4500979 I

a score=-833.000000
s ce10.chrX             4519292 10 + 17718866 ATAAAGCT--TG
s cb4.chrX              9814927 12 + 21540570 AGAAAGCTCATC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17739   10703 10 -   130595 ATAATGCACG--
i caeJap4.Scaffold17739 I 12 C 0
e caePb3.Scfld02_0      2764394 26 +  4147112 I
e caeSp111.Scaffold622   196532 70 +   386604 I
e caeRem4.Crem_Contig0  1451927 51 -  4500979 I

a score=910.000000
s ce10.chrX             4519302 1 + 17718866 A
s cb4.chrX              9814939 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1451978 1 -  4500979 A
i caeRem4.Crem_Contig0  I 51 C 0
s caePb3.Scfld02_0      2764420 1 +  4147112 A
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold17739   10713 1 -   130595 A
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   196532 70 +   386604 I

a score=369357.000000
s ce10.chrX             4519303 564 + 17718866  
s cb4.chrX              9814940 609 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1451979 620 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   196602 547 +   386604  
i caeSp111.Scaffold622  I 70 C 0
s caePb3.Scfld02_0      2764421 600 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   10714 572 -   130595  
i caeJap4.Scaffold17739 C 0 I 419

a score=-8299.000000
s ce10.chrX             4519867 35 + 17718866 TACAGATTAGTATTTATAGTTTTTT-------------TTTTCTTGAT
s cb4.chrX              9815549 35 + 21540570 GGCTTG--------TTCAGTCTTAGGAAAGCGCATTGGTCTTC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1452599 35 -  4500979 AACTTAGATTTCTTTCCAGCTCCTG--------ATTTGGTTTC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2765021 35 +  4147112 ctctgt-------tttcaatCGTCA-TATGATTGCAGTTTGTC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   11286 419 -   130595 I
e caeSp111.Scaffold622   197149  0 +   386604 C

a score=228668.000000
s ce10.chrX             4519902 403 + 17718866  
s cb4.chrX              9815584 489 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1452634 459 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197149 453 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765056 481 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   11705 403 -   130595  
i caeJap4.Scaffold17739 I 419 I 34

a score=4599.000000
s ce10.chrX             4520305 32 + 17718866 TTT--CAACGAAAATTTGCCTCTAACAAATAACG
s cb4.chrX              9816073 17 + 21540570 CTT-----------------CAAAACGAACGACG
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1453093 32 -  4500979 TTTCTCAACCTTACTTCG--CATAACAAATAACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197602 31 +   386604 TTTGACTACCTTCGTTT---CCAAACAAATAGCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765537 31 +  4147112 TTTGACTACCTTAGCTT---CCAAACAAATAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12108 34 -   130595 I

a score=6577.000000
s ce10.chrX             4520337 20 + 17718866 CATAATTGCAGCGGTAA-AAC
s caeRem4.Crem_Contig0  1453125 21 -  4500979 CATAATTGTGACGGAAAGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197633 21 +   386604 CATAATTGTGGCGGTAACAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765568 21 +  4147112 CATAATTGTGATGTTGAGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12108 34 -   130595 I
e cb4.chrX              9816090 20 + 21540570 I

a score=-2229.000000
s ce10.chrX             4520357 5 + 17718866 TGGCC-
s caeRem4.Crem_Contig0  1453146 4 -  4500979 TGGC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197654 4 +   386604 TAGC--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765589 4 +  4147112 AAGC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   12142 5 -   130595 TGAT-T
i caeJap4.Scaffold17739 I 34 C 0
e cb4.chrX              9816090 20 + 21540570 I

a score=-130963.000000
s ce10.chrX             4520362 360 + 17718866 CGTTTGTAATTTACAAAGAACAAATAATTAGGAAACTA-TTCTTGAGAAGA--ACTTTTTCAT-----CATATGAAAATTTTGATTATATGTAAACAAATGTGGCAACATTTGACATCTTGATTAATGTGAAGTACGGCCAAGGGGGAAATCATTACAAAATTAACAAATATCATAGTGAAACCTTTCAAAAATTTTTGAGCCAAAAAGTGGTCTAAACTGAGTTT-----GCACAACTTTATAAATAATCTAAAACACTGTTGT--ATGCTCCATGCGTGTACCTCTACAATGTATATTTTAAACAAAATTAGAACTAAAAACCGTCGCAAAAAAGTGAGTTTTGGGTCTCGCCACGATCTCTATCCTAGTTGA-------------
s cb4.chrX              9816110 219 + 21540570 CCTTAGTAGTTCCC---AAACAAATAACGCATAATTGTGTGGACGGTTAG-----------------------GAAAAACTGGCCGct-cagaaagaaaagaagcgGCAGGTGAAGA-----------TAAA-------------TTTACTCAATTCCAGAACCCATAATTGGATTGGGAGGCGGTT----TGTTATTCAAGAAAAAGTTCGGAT-------GTT-----------------CAACCCATCAACAATAATATTA-----------------------------------------------TGGAGAACTGG---------CAAAAATGAGGTATTACAGCCAA----------------------------------
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1453150 227 -  4500979 CGTTTGCAATTTACGGAGAACAAAGTATGGGTGATTCT-TGGATGAATAA-----------------------GAAGA------------GGAAACATAAGAGGTGCGATTTGACAA-----------TAAAGGCT--------GTTTAGTAATTT----------TAGTTCGATAAGGATGTTTTT----AAAGCTTCACCTAGATGATCAAGT-------GTTA------------TATGTTACTCGTCTTAAGTATCCCTCT--CTGCTGT------------------------------------TTGGCGCGGTGGTCCGTGAC-CTAAATTGAACTCTCAACGACTA----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197658 166 +   386604 CGCTTTGGATTTTAAGAATACGTTAATTAGGTGACACA-TGGCTG---------------------------------------------------AGAAGACGGGGAAA----------------------------------GCT--TTCGGTATCAGAA----------GACCAAAACAC----------GTGTTCAgctttctaga-----------------------------attttcctAATTAGAAGTGTTGAAA---GTTCT---------------------------------------CAAGGCAATAA---------CAATCCGTATTTGTTATTCACAT----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765593 239 +  4147112 CGTTTGCGAATaaggagaaaaacaaattaggTAAAACC-TGGACGGCAAG-----------------------TGAGAATTAGGCTGA--GGTATCAGAAGAACATGAAA-TGTGAT-----------TGAAGAGTTGGATGTGGCTAATTAGGTGCCAAGA----GGATTCGATGAAAACCCTTTT----GAGttgttttctttggaaatgCCC-------GTAT------------TGTTATTCCGTTTGTGA--ATTCACA---GTCCTTT------------------------------------CTATGACAATAA---------CAAAAGGAAGGATTCAACAAACT----------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   12147 294 -   130595 CCTTTGCAAAAACC-ACATACACACACCGCATAAT----TGGGCGAATTAACTAGCTTTTCACATGTACATATGCAAGCTT---------TCAATAAGTCGAAAAAGCAAATAGGAAGTGGATTAAAACAAA------------AAGAGCTGAACTTTAAAA-----------AGAGAAACTCGTTT----TGTTTATCGGTGTTAGAAATTGAC-------GCGGAGCGAGCAGAACtctgtgaaatgaaataaaatttgataCGAACGCTTCAAAGATGGagatta-----------------------aaaaacaataa--ttttgcatCAGAGCGCGTTTCGAACAACAC---------------------CGACCCTGGGGGA
i caeJap4.Scaffold17739 C 0 I 216

a score=-3282.000000
s ce10.chrX             4520722 23 + 17718866 AAGTTCCAAAATTT-----ACAGATTTG
s cb4.chrX              9816329 23 + 21540570 ATGtgacatatttt-----tcaggtcaG
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0  1453377  9 -  4500979 -----------TTT-----ACGGGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197824 14 +   386604 ---------GTTAT-----TCAGGTTTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765832 19 +  4147112 ---------ATTATCTTCACTAGCCCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12441 216 -   130595 I

a score=-2951.000000
s ce10.chrX             4520745 38 + 17718866 TTAGTTTGATATAAAAATAAACATAATCAAGACTACGG
s caeRem4.Crem_Contig0  1453386  7 -  4500979 -------------------------------ATTCCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197838 22 +   386604 CTGGTTTGA---------------AATCAA-ACTTCTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765851 23 +  4147112 CTTCTTCGA---------------AGTTAAGATGGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12441 216 -   130595 I
e cb4.chrX              9816352 38 + 21540570 I

a score=-11615.000000
s ce10.chrX             4520783 44 + 17718866 ATTTTGGAATACTGAAGAGATCAGAGAAAGCTAGG-----ATTTAT---CAG
s cb4.chrX              9816390 39 + 21540570 ATTT---CTGAACCT--ACTTG-----AATCTATGAAAGCTTTTGTTAG---
i cb4.chrX              I 38 I 10
s caeRem4.Crem_Contig0  1453393 16 -  4500979 AT-------------------------ATTCTATG-----TTCCAT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197860 29 +   386604 -------ATcatcataaaaatt-----gaactttg-----attctt------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765874 29 +  4147112 -------ATGACTGTGGAAATC-----GTACTGTG-----TTTCAG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12441 216 -   130595 I

a score=-2274.000000
s ce10.chrX             4520827 12 + 17718866 AAAACTTATTCA
s caeRem4.Crem_Contig0  1453409  8 -  4500979 --GACttctt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197889 10 +   386604 --attttgaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765903 10 +  4147112 --GACGAATaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12441 216 -   130595 I
e cb4.chrX              9816429 10 + 21540570 I

a score=-14187.000000
s ce10.chrX             4520839 36 + 17718866 AATCCAAATTT-TAATCATTCGTTTTAGTAGATGCAA
s cb4.chrX              9816439 25 + 21540570 AATCAGAACTC-TACACTTCGCTAT-----------T
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0  1453417  6 -  4500979 ------------------tcccaa-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197899 17 +   386604 -----gatttcGTAAGATTTT---------------G
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765913 28 +  4147112 -----gatttt-tcagtttttctttc--tcgaaG-AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12441 216 -   130595 I

a score=142761.000000
s ce10.chrX             4520875 153 + 17718866 TCCATAACAGCTCACCGATTTTTCTTCCAACTGGAGTTGCGAATGGGTTTCCCTGGAAGAAATCGGACACAGATTCTCCAACTTTGGCAACAGTCTCGCGTGCGCTTTCCGCAGCCTTCGAAACTTGCTCACTAACGTTGCTCATTCTGAAAT
s cb4.chrX              9816464 153 + 21540570 GTTATGAAAACTCACCAATTTTTCGTCCTACTGGGGTGTTGAACGCGTTTCCTTGGAAGAAGTCCGACACCGATTCTCCAACCTTGGCGACAGTCTCACGAGCCGTTTCAGCGGCCTTCGACACTTGCTCAGTTACGTTGCTCATTCTGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1453423 150 -  4500979 ---aaaaaaacataccgaTCTTTCTTCCGACGGCAGTCGCAAATGGGTTTCCTTGGAAAAAGTCGGACACAGACTCTCCAACCTTGGCGACGGTCTCACGGGCGCTCTCAGCAGCCTTCGAAACTTGCTCGGTGACGTTACTCATTCTGTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   197916 153 +   386604 GATAAAATTCCtcaccgatttttcttcCGACTGGAGTTGCGAATGGATTTCCTTGGAAGAAATCCGAAACGGACTCTCCAACTTTGGCAACCGTCTCACGGGCACTCTCAGCAGCCTTCGATACTTGTTCACTTACGTTGCTCATTCTGcaat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2765941 153 +  4147112 AATAATATTACTTACCGATTTTGCGTCCAACCGGTGTCGCAAATGGGTTTCCTTGGAAGAAGTCCGACACGGATTCTCCAACTTTGGCAACCGTTTCACGGGCACTTTCAGCGGCTTTGGACACTTGTTCACTTACGTTgctcattctgaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   12657 153 -   130595 tcccaaattacTCACCAATTTTGCGGCCTACCGGAGTAGCAAATGGGTTTCCCTGGAAGAAGTCGGAAACAGATTCTCCAACCTTGGCGACAGTCTCGCGGGCGCTCTCCGCAGCCTTCGACACTTGCTCGCTCACGTTACTcattctaaaat
i caeJap4.Scaffold17739 I 216 I 1088

a score=-37742.000000
s ce10.chrX             4521028 114 + 17718866 AAAATCAAGATTAG--GGATCATGGAATACAGAACTGTAA--ATATGTTAAATGTG-AAGGTTGATA------TGACAATTGATGAATGGGAAGGTAA-TTTATGATTGTTA----AAAGTGTCAGAGAT---------------------------------------------------------
s cb4.chrX              9816617 100 + 21540570 GA--TTCATCTTGA--------TAATAGAAAATAGTGAGATCTCAGGACGGTTATGTAAGAGGGG--------A------------------TGATGG------ATGCACAA----ATCTTATCT---GTGTAG--------TAGT-------------AAATA-----TGTCAG------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1453573 156 -  4500979 AAACTTTAGATAGA--------TGACGTAATTAATCAAGATTTTGTGGCGTATAAG-AAGATGGG--------AAACA-TGGATTAGATAGGAAATGG-GCAGTGTGCGTAA----ATGTTATCTTGAATATGT--------TAATTTAAAGGTCAAGAAAATACTGTTTGTCAACTTGTTCGAGAT
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold622   198069 131 +   386604 aa--aacaattaaaCTGTCCTGTAAAATACTGTAAAATGATGAATGGT------GG-AAGAACGGTGAA----AAACAATGGATTAGATGGGAAAGATGGCA--GAACACAATAGCACACTATCGTAAATGTGTCCGAGACGTTAT-----------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2766094 131 +  4147112 ta--tatATTAAAG--AACTTATAGCTGACTATATTGTGAAAATAGGTTGTTACGG-GAAAACGGTTGATAGGAATCAGTGGATTAGATGGGAGAGGT--CA--GAGCACCAGAACACGCTATCGTAAATGTGTCT------TGAT-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12810 1088 -   130595 I

a score=-8535.000000
s ce10.chrX             4521142 46 + 17718866 GAAAATTCGAACAGGTTTTTTTAGGATAGTT----------GTTAATCAAGCAAAA-------------------------
s cb4.chrX              9816717 25 + 21540570 ------------------TTTTAGGA---------------GTTGATATATCTAAGAT-----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   198200 70 +   386604 TGGAAGACAAACAG---TTTTCCAGATAACA-----CATTCATTGTCCTAATTGTTGT---CTTTTGATACCAAGACCAAC
i caeSp111.Scaffold622  C 0 I 133
s caePb3.Scfld02_0      2766225 78 +  4147112 TATGAAACAAAGAG---TTTTCCAGATAACAACTGCCCTTTATTAGCACAATCAAGATAAACATTGGTCAACTACGCAAAG
i caePb3.Scfld02_0      C 0 I 18
e caeJap4.Scaffold17739   12810 1088 -   130595 I
e caeRem4.Crem_Contig0  1453729 62 -  4500979 I

a score=-2007.000000
s ce10.chrX             4521188 36 + 17718866 TGTAAGATGTAT--------GATGGA--TCTGCTTGAAACGTATTC---------
s cb4.chrX              9816742 43 + 21540570 GGGAAGGTGTGTTTGTATTCGGTGTA---GTGTTTGAAACGTAGCT---------
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0      2766321 55 +  4147112 ttcaaaatgaaatcctAACAAGTGAAGCCGTAATTGAGCAGGAGCTTCCAAACTA
i caePb3.Scfld02_0      I 18 C 0
e caeJap4.Scaffold17739   12810 1088 -   130595 I
e caeSp111.Scaffold622   198270 133 +   386604 I
e caeRem4.Crem_Contig0  1453729 62 -  4500979 I

a score=-6025.000000
s ce10.chrX             4521224 72 + 17718866 AA-----GGTTTTGAAAAAATGTATATAAGCCGCCTTAATTTCGAATTC--------ATCTAAAACAATGTTCAAA---------------TGTGACACC
s cb4.chrX              9816786 75 + 21540570 AGCATTCGAATTCAGCAAAATGAA--------GCCCTAATTGAGAAGTT---CCATAGGCAAAAACATGTTTCATG--------------TTGGAATGCG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1453791 82 -  4500979 AG-----GATTTCAACAAAGTGAA--------GCCCTAATTtagctgtt---tcaaaa--aacaaaatttctcatAAATGCATCAAAAACACGGAAGACG
i caeRem4.Crem_Contig0  I 62 C 0
s caePb3.Scfld02_0      2766376 68 +  4147112 -------AATGtgagcaaa---aa--------acaaaaatttgccATGTAAGCCACGAACTACGGAAGACGTTATA--------------TCGAATGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   12810 1088 -   130595 I
e caeSp111.Scaffold622   198270 133 +   386604 I

a score=476.000000
s ce10.chrX             4521296 1 + 17718866 C
s cb4.chrX              9816861 1 + 21540570 C
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0  1453873 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 18
s caePb3.Scfld02_0      2766444 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17739   13898 1 -   130595 C
i caeJap4.Scaffold17739 I 1088 C 0
e caeSp111.Scaffold622   198270 133 +   386604 I

a score=14051.000000
s ce10.chrX             4521297 56 + 17718866 AGTTA--GCAAAAATCGATGG-------------GCATGTGCGCGAGC--------------------TAGTACTAG----------TAAGCAAGAGA--CGT
s cb4.chrX              9816871 77 + 21540570 TAACATGAAGAAAATCGATGA-----------CCAAACGACAGCGAGCAGTTAGTCG------TTTTGCAGTCGTGTTAG-------CAAGAAGCAGA--CAT
i cb4.chrX              I 9 I 35
s caeRem4.Crem_Contig0  1453892 76 -  4500979 TGCCA--ACAAAAATCGATGGGGGAAAAAGGCACAAGCGTGTGTGGAGGGTT----------------CAGTTGTAGTAG-------TAGGCAAGCGA--CAT
i caeRem4.Crem_Contig0  I 18 I 11
s caeSp111.Scaffold622   198403 67 +   386604 AGCTA--GCAAAAATCGATGGCGAAA------AGGCATGAGCGTGAGCGGTT----------------CAGTTGTAG----------TAGGCAAGAGA--CAT
i caeSp111.Scaffold622  I 133 I 5
s caePb3.Scfld02_0      2766446 82 +  4147112 AGCTG--GCAAAAATCGATGGCGAAA--AGGCAGGCATGAGCGTGAGGGGTT----------------CAGTTGTAGTAGTAA-TGCTAGGCAAGAGAGGCAT
i caePb3.Scfld02_0      I 1 I 12
s caeJap4.Scaffold17739   13899 97 -   130595 AGTTA--GCAAAAATCGATGCGGAAA--AGCATGGCATGAGCGTGAGCGGCTAGTGGAGAGTATGGAGCAGTAGTAGTAGTAGCCAGTAGGCACAAGA--CAA
i caeJap4.Scaffold17739 C 0 C 0

a score=6431.000000
s ce10.chrX             4521353 12 + 17718866 GGGCTCTCGTTG
s caeRem4.Crem_Contig0  1453979 12 -  4500979 AAGCTCTCATGG
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   198475 12 +   386604 AACCCCTCGTTG
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0      2766540 12 +  4147112 AAGCTCTCGTTG
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17739   13996 12 -   130595 CGGCTCTCGTCG
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9816948 35 + 21540570 I

a score=63041.000000
s ce10.chrX             4521365 113 + 17718866 CTCACTTTGT--TTTCTAGTGGACACTATGGGTGC----------------------CAAGAACGC---CGACGAC-AACAACAAACATTTTCATCG-GGAGCCC-----------------TGGAA---A---ATGACGAATGTATG----CATTACCATTGTTGAAA
s cb4.chrX              9816983 155 + 21540570 CTCACTTTGTTCTCTCTAGTGGACACTATAGGGGCTCGCGTTGCTGGAAAGAGCCTTCAAGAACACAAAC----AC-CACAACAAACATTCTCATCA-AGAGCGTAGCATGCGCCTGCTGCTTGAA----ATAGATGACGAATGTATG----CATTACCATTGCTGTAA
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0  1453991 107 -  4500979 CTCACTCCGT--TCTCTAGTGGACAC--TGGGAGCTC--------------------CGAGAACAC---C----AC-GAcaacaaacattttcatcaGAGAGC-------------------TGGA----A---ATGACGAATGTATG----CATTACTATTGTTCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   198487 111 +   386604 CTCACTTTGT--TTTCTAGTGGACACTACAAGGGCCC--------------------CTCGAACGC---C----AC-GACAAcaaacattttcatcaaCGCGcgc-----------------tgaa----a---atgatgaatgtATG----CATTACCATTGTTGGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2766552 113 +  4147112 CTCACTTTGT--TCTCTAGTGGACACTAT---GGCCA--------------------CGAGAACGC---C----ATGGAcaacaaacattttcatcagagagcgc-----------------tgaaaatga---atgacgaATGTATG----CATTACCATTGTTCGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   14008 104 -   130595 CTCACTTCGT--TCTTTAGTGAAGGCGATGGGCAC----------------------CGGGAACAC---C----AC-CA----AAACATTTTCGCCAGAGA---------------------CGA-----G---ATGACGAACGTGTGCATTCATTCTCATTgttggaa
i caeJap4.Scaffold17739 C 0 I 965

a score=-37701.000000
s ce10.chrX             4521478 162 + 17718866 TTTGGACTGGAAGCGCAATGGA-------TGAAAAAACCACGCTATTTCGAAG--CTCATTTCTGATGCTGGGGCACA-------------ACACAAAATTAAA-TGAG-AC----GAGGAGGGGGAGAAGGG---ATGGAGAGCA-TGCATGTTTTGTTGTTCACTTTCGAAAAAATGTATCGATTTTTTCTA------------------
s cb4.chrX              9817138 132 + 21540570 AT--GGCAGAAGCCGCGGCCGC-TGAGCCCGAGGGAT------------AGGG--CTC-------ACCGGAAAACATG-------------------GCTTTGTTTGAA-GC--TGGAAAAAGGGGCACTA-----GTGAACAACAGTGTGTTATTTTTTGGTC-------GGATGG-----GAACTAATTATTA-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1454098 126 -  4500979 AT--GGCAGGA-------------GAGCATGGGGATA------------AGGG--CTC--------CGGAAAAACACGAAGAGCCGGCTATTTTGAAGCTTATTTCGAGCGC--TGGGGACAAGAGGAAAGGG-Atgcaaaaaacgg------------------------aaaaag-----gaaatttttttca-----------------
i caeRem4.Crem_Contig0  C 0 I 72
s caeSp111.Scaffold622   198598 148 +   386604 AC--GGCAGGAG-AGCAGCGATGCGGACTCGAGAAAAACA------TCGAGAG--CTCGCT----ATTTTGAAGCTCA-------------TTTTGAGCGCACTTAGAG-ACAACGGATAAacgagagaaatg---agaaacggCAATGAG--------------------------------AATTATTCTATTACGTgaatttctctctt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2766665 163 +  4147112 AT--ggcaggagaaaaaaagatgtcgGCTCGGGGAAAACA------TTGAGAGCTCTCGCT----ATTTTGAAGCTCA-------------TTTCAAGCGCA---AGGG-GTCACACAAAAAAGAGTGTAAGAGACAGAAAAGGCAATGAGCCTTTCat------------aaaaag-----caatttttcatGTACGCA---TTGTGTctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   14112 965 -   130595 I

a score=-7352.000000
s ce10.chrX             4521640 35 + 17718866 ---------------GCAAATGTTTGAAGTAAATAACAACTTTCAAATGT------
s cb4.chrX              9817270 32 + 21540570 --------CGAAATTCctatt----------attaaaaaatttcgccTAT------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   198746 46 +   386604 attAG---TGAATTCAA-------GCGAGCAGCCACAAAACTTTCATTAGATAAGT
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0      2766828 56 +  4147112 gagagaaatgaaattgaaatttttgaaaaaaattacgaaatatTAGTTTGAAACGT
i caePb3.Scfld02_0      C 0 I 114
e caeJap4.Scaffold17739   14112 965 -   130595 I
e caeRem4.Crem_Contig0  1454224 72 -  4500979 I

a score=-1757.000000
s ce10.chrX             4521675 27 + 17718866 -GATAATTAGTTATCAATT-CAGTCAGTT
s cb4.chrX              9817302 16 + 21540570 ---------CTTATTTGTCACAATG----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   198804 22 +   386604 GGTTGATGAGTTATCAGTAACA-------
i caeSp111.Scaffold622  I 12 C 0
e caePb3.Scfld02_0      2766884 114 +  4147112 I
e caeJap4.Scaffold17739   14112 965 -   130595 I
e caeRem4.Crem_Contig0  1454224 72 -  4500979 I

a score=-3036.000000
s ce10.chrX             4521702 26 + 17718866 TATCAAAAAAAAGTACGTCATTAGCA
s cb4.chrX              9817318 18 + 21540570 --------CAAGCAAAACAACTATCG
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1454296 23 -  4500979 ---taccacaaaaaagttgagtaGCA
i caeRem4.Crem_Contig0  I 72 I 148
s caeSp111.Scaffold622   198826 18 +   386604 --TTtcggaaaataaaatca------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2766884 114 +  4147112 I
e caeJap4.Scaffold17739   14112 965 -   130595 I

a score=-2511.000000
s ce10.chrX             4521728 69 + 17718866 ------TAACTTTGCCGTATTTGCATGTCTAGGAAATTTTAGAAACTAGAATTGCTAAAAAGTGGTTTAAAAGTT
s cb4.chrX              9817342 49 + 21540570 CAACTGAcactttttcggaat--------------ttttttagaCAGAAAATG----------CTctcaaaag--
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold622   198844 56 +   386604 ------ttgCTTTTCCGTAAT-----------GCATTTTTCACAGACAAAATGGC--ACACATTACTGAATTGTT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2766884 114 +  4147112 I
e caeJap4.Scaffold17739   14112 965 -   130595 I
e caeRem4.Crem_Contig0  1454319 148 -  4500979 I

a score=-11852.000000
s ce10.chrX             4521797 76 + 17718866 GCGGGACGCCGAAAATTGGCTGAGAAATTGTCAAAAATTTCCAAGTGACGGAA-------AACCGTATGTTATTGTGATTAGT-------
s cb4.chrX              9817391 13 + 21540570 --------------------------------------------------gaa-------aa--------------aagtgatG------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   198900 39 +   386604 ------------------TCGGAATAATCGGGCAA------------ACTGGG-------AA--------------AATGACTGGattat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2766998 65 +  4147112 acaaaatggaagaaaattattgaataattCCCCAATAT---------Attgagagaacaaaa--------------aataactgcaT--T
i caePb3.Scfld02_0      I 114 C 0
e caeJap4.Scaffold17739   14112 965 -   130595 I
e caeRem4.Crem_Contig0  1454319 148 -  4500979 I

a score=35130.000000
s ce10.chrX             4521873 433 + 17718866  
s cb4.chrX              9817404 435 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1454467 467 -  4500979  
i caeRem4.Crem_Contig0  I 148 C 0
s caeSp111.Scaffold622   198939 442 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2767063 450 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   14112 965 -   130595 I

a score=50741.000000
s ce10.chrX             4522306 126 + 17718866 TCCTACCGATCAA---------ACGGGAGAT--------ATA-TGGGGGGAG-----TAG---GAGAGAAATTACG-GGAAGAAGG-------CTATC--------------GAGCGGCCTTGACACGGTGCTTGACTT------------TTTGGCGAAACGTATCAGTTGACCTCTATTATTTG
s cb4.chrX              9817839 153 + 21540570 TCTTACCGATCAAAAACGCAATACGGGGGATGCGATGAGATA-TCGTGG----------------AAGAGATTACGTGGAAAAAGAAAGGACCCGAA----------------GATGGCCTTGACATGGTGCTTGAGATAGATAAAGAACGAGCGACGACATATATCAGTTGACCCCCATTTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1454934 113 -  4500979 TCTTGCCGATCAAAA-------ACGGGAGAT--------ATA-CCG--------------------AGAGATTacggaaaagaaga-------cgaaC--------------GAGCGGCCTTGACATGGTGCTTGACTT----------------GCGAAACGTATCAGTTGACCTCCATTTTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   199381 105 +   386604 TCTTACCGatcaaaaa----a-gagggagAT--------ATA-ATG--------------------GGAGATTACG-----------------CTAA----------------GACGGCCTTGACATGGTGCTTGACTT--------------TTGCGAAACGTATCAGTTGACCTCTATTTTTTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2767513 112 +  4147112 TCTTACCGATCAAAAACGGTA-AAAGGAGAT--------ATAGAGA--------------------GAAGATTACG-----------------CGAAC--------------GAGCGGCCTTGACATGGTGCTTGACTT--------------TTGCGAAACGTATCAGTTGACCTCCATTTTTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   15077 138 -   130595 TCTCATCGATCAAAA-------ACGGAAGAT--------ATT-TagagacagatagatagagagaaagagacagagcgagaagaAT-------CGAATTGAATTGCGGACGAGATCGGCCTTGACATGGTGCT-------------------------AAACGTATCAGTTGACCTCCATTTTTTG
i caeJap4.Scaffold17739 I 965 I 1329

a score=5157.000000
s ce10.chrX             4522432 129 + 17718866 GGCTATACAGAGATGAGGTATGATGGACA-GAAACAGAAAAACACACACA-AAGGGTATTGATGAG----A-----ATCAT-AGACGGTGACAACGCCAA----------------------------TTCAATGAGCAGTAGATGTGC-AGGAGA----CG---TGTCTCGTTCAG
s cb4.chrX              9817992 167 + 21540570 -CTTACGCGGATAGTCGGGAAGGGTGAGAGGGGGGAGAAAAAACAATGGTGGGAGACATTGATGAG----ACAGAGAGATTGACACAACGAATACAACGACGACTCTAGGTTTTGCCTGTCATAGCAGTTGGTTGAGCAGGAGACGTGC-GAGCGA----CGCTATTCGCATTTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1455047 147 -  4500979 --TGAGACGAGTAAGAAGGAGGGGGGAGA-TGAGGAGATGAAAAAAGGAT-GAAGACGTTGATGAG----ATCGGTATGAT-ATACAACAACTACAG-----------------ACCCCTCACAGCAGTTGTCCGAGCAGAAGACGTGCAAAGAGA----CAAGGTCTCTAGTTCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   199486 125 +   386604 --TGGGGCAACTAGTGAGAAGGA-------GATGGTGATGAAAAAGCGAT-AAAGATATCGATGAG----ATTGGCAAGAT-ATACAATGACTACGTCAA--------------AGC------AGCAGTT----GAGCAGAAGACGTGT-TGAAGA----CG--------TGTTCAg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2767625 131 +  4147112 --TGAGACAAAGAGTAAG---------------GATGATGAGAAAAC-------GATATCGATGTGATCCATTGGCAAGAT-ATACAATGAATACGTCAG--------------ACCGCACATAGCAGTTGGTCGAGCAGAAGACGTGC-AGGAAAGTGCCG------GTCGTTGAG
i caePb3.Scfld02_0      C 0 I 660
e caeJap4.Scaffold17739   15215 1329 -   130595 I

a score=-4623.000000
s ce10.chrX             4522561  97 + 17718866 TTGGAAACGAAGGCGAGACGTGAAAAGAGTGCGTGGTTGCGAGAGACGCAGT-------------------GATAGAGACAAACTGGATAGGTTATGAGAACG---AGAACCAC-----TCGGA-
s cb4.chrX              9818159 105 + 21540570 ------------------TagtgagagagtgtgtgaGA-GAAGGGACGCAGACGCTACGAGtagatggggggggggggggggaagtgTAGGGTTATGAGGCAAAGAAGAACCTCTTTAGTCGGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1455194  77 -  4500979 ------------------TGAATAGCGACAATGTGTGT-CAAGAAGCGCAGGCacaa--------------ggagagaaaaaaggcgATGGGTTATG---------AGAACCGC-----TCAGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   199611  81 +   386604 ---------------tcaatgaaaaagagtaTATGAat-tgagagacgcagataC----------------GCAGGAAAAAAGAGCGGTTGG---CG---------AGAATCGGAGGCATTGAGA
i caeSp111.Scaffold622  C 0 I 639
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I

a score=-2455.000000
s ce10.chrX             4522658 24 + 17718866 CTGAGGCCATTCGTAGA--------------------ATGAAGA------
s cb4.chrX              9818264 44 + 21540570 ACGAAG------GACAATTGCTGGACAATTGAGAGATGTATAGATGACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1455271 18 -  4500979 CAGAGG------GAAGA--------------------GTAAAGA------
i caeRem4.Crem_Contig0  C 0 I 411
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I

a score=-1020.000000
s ce10.chrX             4522682 254 + 17718866 ATGGAAGTTGTATCTGTCTTTTAATAGACTCAAATGAAACTGAAGAAAAAAAGTACAAAACATAAGACACTATATATTTTTTTTCATATTGAAAAAGAGTTTGCAAATTTTCTTGAAATTCAAAAATTCTGTTTTTCGTGACAACACTTTTTGCTTACTCATTTTGTAAAATTTTAACGTGGGCTATTGTTTTTGTGTTTAAATATTTATACTACATTTTTGAAAATTATTATTTTCACATTGCCACGTGAACT
s cb4.chrX              9818308 179 + 21540570 ATGGATATGGGAGGTCAGTACggagagaaataaaaaagacgattgaaaaaaagaatgggctctgaaaaa----------------------aacaacagtttggaaa--------------aaaaa----------ccagacgATATT-------------------AGAGTTTCAAAGGA----------TTTGTGTCTCACTGTCTTTAAATCgctgtcaaaaatattcatttgtTTGAAACTTCATGAATT
i cb4.chrX              C 0 I 46
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I
e caeRem4.Crem_Contig0  1455289 411 -  4500979 I

a score=0.000000
s ce10.chrX             4522936 57 + 17718866 CAAAATTTATTCATGCAAATTTAGAATAAAATCTGTTCAACTAAGCCTATACGCCTC
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e cb4.chrX              9818487 46 + 21540570 I
e caeSp111.Scaffold622   199692 639 +   386604 I
e caeRem4.Crem_Contig0  1455289 411 -  4500979 I

a score=-576.000000
s ce10.chrX             4522993 343 + 17718866 GTGCAGAAGTCCAAATTTGAAAGGTAAACCTAAACCTAAATTTGATCATGAACACTGAGCCTGAAAGCCTGTAAACCAT-AGGCAAAGCCTAAAAACAGCTTACAAACCTTTCTCTGAAA--TTATGTCTGAATACG-TAAGTTTATTATATGAACTAAGCTTTACAGCTAAATCTATGTTTGCAGGCTCAG-------TTTTGAACGTTAATAACTTTCGAATCCACATGGAAATTTAGATATAATTGAATAAAAAAGTCCTCGTTAATATTTGAAAAAAAATGTTGTCAATTTACGAATCCTTTTTTTTCGCCTAAAAAGGAGAATGTCAAAAGTACTAAATAAAAAAACAA
s cb4.chrX              9818533 290 + 21540570 GTACAGGAAAATAGATTGGTTTCgtaaaatgaaac----attt-----------ttaagttttaaa-tATGTTATTCGTGAtggaacatttaaaaaa---tcggaaatcttgttttgaaaaattatatttggGAATGCTCTGCATATCA----AAGTGTGTCCTACCAGAAAAAC-ACAATTGCAAGCCGTGAAATAGCTTTTGCAGGCTGAAAACTTTCCAATC---------ACCTAAATTATCACGGTCAAAAAATTTCCCG---------GAGCCCAAAT---------TTATTCTCCCCTatcagtaacctaaaaa-------------acttCTCAATAACAAAACAA
i cb4.chrX              I 46 I 80
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I
e caeRem4.Crem_Contig0  1455289 411 -  4500979 I

a score=0.000000
s ce10.chrX             4523336 88 + 17718866 AACATTCAAGAGCAACTAAGCAGTTTTTCCGAAATTTTTTCCAAAGTTCCAAAGTCAACCTTAACCTTAAGCTGCAGAATTTCTGATG
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e cb4.chrX              9818823 80 + 21540570 I
e caeSp111.Scaffold622   199692 639 +   386604 I
e caeRem4.Crem_Contig0  1455289 411 -  4500979 I

a score=-245.000000
s ce10.chrX             4523424 62 + 17718866 TTTACCAGCTA---CTACGAAACAAAAACGATTCTCATA--GATGATTTCCCATTTTC-----GCACACAAA
s cb4.chrX              9818903 72 + 21540570 TTTACTGGTTGAGCCAACTAAAAAAGAAAGGACCATATGccaattctttcttttttttcttctggacgTTGC
i cb4.chrX              I 80 C 0
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I
e caeRem4.Crem_Contig0  1455289 411 -  4500979 I

a score=-2218.000000
s ce10.chrX             4523486 147 + 17718866 ATGTTGGCATCACAAACAAAG--TGAGCACAAGTATGGAGAGAGATTTGA-------GAGCACAGACATCAAAGAATAAACTATGTTCTTTGTTCTTTTTAAACTACTTTGAAAAAAAACAAATGAATTTACATATT------TAAAATGTTGCAATTGCAA
s cb4.chrX              9818975 124 + 21540570 ATGTGTGCACtaggaaaaataatttcaaacacACTGGGTACCAGATTGCATACAACAGAGCATTTGAAC---ATGataaa------------------------------aggagaaaaagaagcaatATAACAATT-----ATACATGATGataaatgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1455700 116 -  4500979 ACATTGGCAttacaaacaaaa-----agaaaagatgaggAAGAGATAGGA--------AGCACAGGCAT---AGAGTTGA------------------------------AAAGGGGAATGTACAGATTTGAAAGTTAACTCATTCAACTTTACAAGTAAAA
i caeRem4.Crem_Contig0  I 411 C 0
e caePb3.Scfld02_0      2767756 660 +  4147112 I
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I

a score=-15338.000000
s ce10.chrX             4523633  72 + 17718866 ----------------------------------------TT--TCATGATGGAAATATTGGAAAATGTC--------TATAAAATAACGCAGACA----GTGCCAATCAAAAGCTTTTCTCATCT--
s cb4.chrX              9819099  95 + 21540570 tttcg-aaga-----tcAGAAAACCGAATAGTATGGCAATtc--ttttcaggaaaattaaTGACAGGAACATGC----TTAATAATA-------------GTGTCAGTG--------TCTACCATTCA
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0  1455816 128 -  4500979 TACCATAAGAGGCTCTTAGAGAGAAGAACACTGAAAAAGATCAGTCGgaaaggaaattggaaaaaagagcagATGAAATTGACACTACAGGGGGTTCTTTATGTCATTGAAAAGGCTTTTTCCCGTCA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2768416  55 +  4147112 ----------------------------------------TC--TCACAGTGGGAGTT--------TCACACAC----TTTGCATTAAAAAATGTA----AAGTCAATCAAAA---------------
i caePb3.Scfld02_0      I 660 C 0
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e caeSp111.Scaffold622   199692 639 +   386604 I

a score=-139.000000
s ce10.chrX             4523705 20 + 17718866 ACCCAGTCGGTTGAGTGAAT--
s caeRem4.Crem_Contig0  1455945 21 -  4500979 TCACACCCAGCTGAGCCATAT-
i caeRem4.Crem_Contig0  I 1 I 2
s caePb3.Scfld02_0      2768471 20 +  4147112 --CCACTCAGCTGAGTCTGAGC
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e cb4.chrX              9819194 22 + 21540570 I
e caeSp111.Scaffold622   199692 639 +   386604 I

a score=1692.000000
s ce10.chrX             4523725 3 + 17718866 GAA
s caeRem4.Crem_Contig0  1455968 3 -  4500979 gaa
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   200331 3 +   386604 GAA
i caeSp111.Scaffold622  I 639 C 0
s caePb3.Scfld02_0      2768498 3 +  4147112 gaa
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17739   15215 1329 -   130595 I
e cb4.chrX              9819194 22 + 21540570 I

a score=6893.000000
s ce10.chrX             4523728 35 + 17718866 AGGAAACA-TATAATATCAAAGCTGGCGTGCCAATT-
s cb4.chrX              9819216 20 + 21540570 AGGAAAC------------ATGC-----TGTCATTTA
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0  1455971 33 -  4500979 atgaaacattaaaatatCGATGC----ATgccatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   200334 33 +   386604 ACGAAACATTAAAATATGGAAAC----ATgccattct
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2768501 33 +  4147112 atgaaacattaaaaCATGGAAGC----ATGCCATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   15215 1329 -   130595 I

a score=842345.000000
s ce10.chrX             4523763 1254 + 17718866  
s cb4.chrX              9819236 1277 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1456004 1206 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   200367 1210 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2768534 1201 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   16544 1232 -   130595  
i caeJap4.Scaffold17739 I 1329 I 40

a score=2012.000000
s ce10.chrX             4525017 44 + 17718866 AGTAGATA--TGAGGGA-------------------TTATTTCCATGTTTGCAAGTGAAC--AATGA
s cb4.chrX              9820513 62 + 21540570 AGGTAACAGTTGGTGTGCTGACGTGTGCTAAGATTTTTGTGT-----CCTGGGAATGCACTAGATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1457210 55 -  4500979 AGGCGATA--CGATACGGCACATCGTTCCA------TTGTTTA----CCTCTGAGTGCTCTAGATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   201577 50 +   386604 AGTATATA--CGACACG-----TTGTTCT-------TTGTTTGC---CATGTGAATGCTCTAGATAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2769735 43 +  4147112 AGTAGATA--CGGCACA-------------------TTGTTTGC---CCTATGTGTGCACTAGATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   17776 40 -   130595 I

a score=1470014.000000
s ce10.chrX             4525061 1440 + 17718866  
s cb4.chrX              9820575 1499 + 21540570  
i cb4.chrX              C 0 I 3093
s caeRem4.Crem_Contig0  1457265 1455 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   201627 1460 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2769778 1446 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   17816 1467 -   130595  
i caeJap4.Scaffold17739 I 40 I 7734

a score=946.000000
s ce10.chrX             4526501 7 + 17718866 --AAATTTA
s caeRem4.Crem_Contig0  1458721 7 -  4500979 --GAATTTA
i caeRem4.Crem_Contig0  I 1 I 5710
s caeSp111.Scaffold622   203087 9 +   386604 atttattaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2771224 8 +  4147112 A-GTATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I

a score=-740.000000
s ce10.chrX             4526508 2 + 17718866 CA
s caeSp111.Scaffold622   203096 1 +   386604 t-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2771232 2 +  4147112 TA
i caePb3.Scfld02_0      C 0 I 2074
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I
e caeRem4.Crem_Contig0  1458728 5710 -  4500979 I

a score=555.000000
s ce10.chrX             4526510 14 + 17718866 TACTTTGAATCATT
s caeSp111.Scaffold622   203097 14 +   386604 taaTGTGCATCGTT
i caeSp111.Scaffold622  C 0 I 3462
e caePb3.Scfld02_0      2771234 2074 +  4147112 I
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I
e caeRem4.Crem_Contig0  1458728 5710 -  4500979 I

a score=0.000000
s ce10.chrX             4526524 1333 + 17718866  
e caePb3.Scfld02_0      2771234 2074 +  4147112 I
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I
e caeRem4.Crem_Contig0  1458728 5710 -  4500979 I

a score=685.000000
s ce10.chrX             4527857 64 + 17718866 CGTTTCATCTTTCA--GAAATTTAATTTTGTTTC--ATTGTGTTTCGGTCT--TCAGCTGACGATAATAG
s caePb3.Scfld02_0      2773308 69 +  4147112 CACCTcaactttgaatgaaaattgtttcttttctcaattgtgTGTtgctcaaattttctga-aataatag
i caePb3.Scfld02_0      I 2074 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I
e caeRem4.Crem_Contig0  1458728 5710 -  4500979 I

a score=-986.000000
s ce10.chrX             4527921 3 + 17718866 TTA--
s caeRem4.Crem_Contig0  1464438 3 -  4500979 TTC--
i caeRem4.Crem_Contig0  I 5710 C 0
s caePb3.Scfld02_0      2773377 3 +  4147112 --CTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9822074 3093 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I

a score=26487.000000
s ce10.chrX             4527924 103 + 17718866 GAAAGAAGGACCAAAAACTGAAAAATTCT-TTCAAAAAGCAAGAATGCAGTGTTCAAAATGCACCACGTTTCCGGTTTTGTCTCGAG---CGTAGCATGTTTCTATG
s cb4.chrX              9825167 104 + 21540570 gaaagaAAGACCAAAGCTTAACACACGtg-acgaaaaagaagaaaag--gtgTTCAAAATGCACCAAACTTCCGGTTTCGTCTCCAGTCGTGTGCAATGTTTCTATG
i cb4.chrX              I 3093 I 1596
s caeRem4.Crem_Contig0  1464441 105 -  4500979 AGAAGAAagatcaaaaaccaaaaaaaaagtgtggaagaaaagaaaag--gtgtTCAAAATGCACAAAGCTTCCGGTTCTGTCTCCAGGCATGTGCAACGTTTCTATG
i caeRem4.Crem_Contig0  C 0 I 855
s caePb3.Scfld02_0      2773380 103 +  4147112 AGGGGAGAggccaaaaaccaaaaaagaaa-atgtgaaaaga-aaaag--gtgttcaaaaTGCACCACACTTCCGGTTTTGTCTCCAAGCATAGGAAATGTCTCTATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   203111 3462 +   386604 I

a score=175.000000
s ce10.chrX             4528027 24 + 17718866 GAAGGAATTGTCAATGGGTTGCTG
s caePb3.Scfld02_0      2773483 23 +  4147112 CAATT-TCTGACAATAGGTCGTTG
i caePb3.Scfld02_0      C 0 I 1235
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9825271 1596 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I
e caeRem4.Crem_Contig0  1464546 855 -  4500979 I

a score=0.000000
s ce10.chrX             4528051 878 + 17718866  
e caePb3.Scfld02_0      2773506 1235 +  4147112 I
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9825271 1596 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I
e caeRem4.Crem_Contig0  1464546 855 -  4500979 I

a score=4.000000
s ce10.chrX             4528929 13 + 17718866 TGCCCCCTGGAAA-
s caePb3.Scfld02_0      2774741 14 +  4147112 TATCCCTTGGTATT
i caePb3.Scfld02_0      I 1235 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e cb4.chrX              9825271 1596 + 21540570 I
e caeSp111.Scaffold622   203111 3462 +   386604 I
e caeRem4.Crem_Contig0  1464546 855 -  4500979 I

a score=5055.000000
s ce10.chrX             4528942 16 + 17718866 CTGATCATCGATA-----TCG
s cb4.chrX              9826867 21 + 21540570 CTGATCAACgattttctctcg
i cb4.chrX              I 1596 I 1
s caeRem4.Crem_Contig0  1465401 16 -  4500979 CTGATCAACGATT-----TCG
i caeRem4.Crem_Contig0  I 855 I 1
s caePb3.Scfld02_0      2774755 16 +  4147112 CTGATCGACAATT-----CCG
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   203111 3462 +   386604 I

a score=106414.000000
s ce10.chrX             4528958 416 + 17718866  
s cb4.chrX              9826889 485 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1465418 445 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 47
s caeSp111.Scaffold622   206573 432 +   386604  
i caeSp111.Scaffold622  I 3462 I 361
s caePb3.Scfld02_0      2774773 434 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I

a score=-5325.000000
s ce10.chrX             4529374 23 + 17718866 ------------------CGCACGAGGCATTTTTGCACGCA-----------------
s cb4.chrX              9827374 57 + 21540570 cagaaaaaaaaaatcgaccaCAAATTTTCTTCCACCAATCACAAAGTGAAC-CGATCA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2775207 39 +  4147112 -------------tc--cttcatttttcattttctttagaagaaaaagaacgcG----
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   207005 361 +   386604 I
e caeRem4.Crem_Contig0  1465863 47 -  4500979 I

a score=13252.000000
s ce10.chrX             4529397 108 + 17718866 TGGCCCAA----GATCA-CTTTTTCAACGAAATTTTGGAAATCGTTTC------TTTTTATCAGTGA----------GCATAAACTATAATATGATTCCTATC----AAGTTTCCTGCTTTTTGAAAATTTAT
s cb4.chrX              9827431 124 + 21540570 TTGCTCTGCaataacta-ttttttcattgaa--------tatCTTTTTCATAAACTTTTATCAGTATGAGATGCTGCACACAAACTATAAACTGATTACTATTTATGCCTTTTCCTGTTCATTGCAAGTTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1465910  94 -  4500979 TGTCTTTA----Gatta-tttttccatgaaa--------ttttAACTT------TCTTTATCAGTTT----------CCACAAACTATAAAATGTTT----------CCTATTCCTGTTCATCACAACTTGAT
i caeRem4.Crem_Contig0  I 47 C 0
s caePb3.Scfld02_0      2775256 108 +  4147112 TGTCTcaa----gatcacttttttcattgaaa-----agtgtcttttt--tcggtttttatcagttt----------gcacaaactacaaattgaTAGTTATT----CCTATTCCTGTTCATCGCAACTTTAT
i caePb3.Scfld02_0      I 10 I 97
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   207005 361 +   386604 I

a score=1844.000000
s ce10.chrX             4529505 41 + 17718866 CTATCATTAAGTATAAACCATTTCAGCCTCGTTTGCAAATT
s cb4.chrX              9827555 30 + 21540570 C-----------ACATTCCGTTTCCGCTCCGTCAGCGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1466004 30 -  4500979 C-----------ACTTTTCACCTCCGCTAAGTTGGcaaatt
i caeRem4.Crem_Contig0  C 0 I 243
e caePb3.Scfld02_0      2775364 97 +  4147112 I
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   207005 361 +   386604 I

a score=-2851.000000
s ce10.chrX             4529546 497 + 17718866  
s cb4.chrX              9827585 441 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2775364  97 +  4147112 I
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   207005 361 +   386604 I
e caeRem4.Crem_Contig0  1466034 243 -  4500979 I

a score=-5236.000000
s ce10.chrX             4530043 130 + 17718866 ------CTTAATATTGAAATTCCGCGAACCAAAGTA----ACACCTGGATTCTCCCGCTAACTCTACTCAGTCACCAAAAATCATCTCTTTTTCTGTCATGCTGCAGTTTTAAGCGTTTTTTTTGCAATATAATGTTTCG
s cb4.chrX              9828026  97 + 21540570 ACTAATATTGACTACAAAAAGTGGGAAaccattttt---------tgtattctccTTCACACTT-------TCAGTAATAAGGCACTTGTATT---TCAA---GAATCTTT--TCTTCCAC-------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2775461 116 +  4147112 ------CTTAATCATAAGATTCCGAGAAACATTATTATTGAAACACCTGTTCTACCTCA-ATGC-------TCAT--ATAATCCACTCATTCT-GATCAA-CTGAATCTTTGATcatttatt------cagatttttttg
i caePb3.Scfld02_0      I 97 C 0
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeSp111.Scaffold622   207005 361 +   386604 I
e caeRem4.Crem_Contig0  1466034 243 -  4500979 I

a score=-8163.000000
s ce10.chrX             4530173 40 + 17718866 AAGAACTATGTCTAGGTTGTTTTTTTGCAAAACTGGGCAG---------------
s cb4.chrX              9828123  9 + 21540570 --------------------CTCTTT----TAC----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   207366 43 +   386604 AAGAACATTGTTTTGTGTGTTCTGTT----CACTAACCATCC--------AGTAA
i caeSp111.Scaffold622  I 361 I 6
s caePb3.Scfld02_0      2775577 47 +  4147112 ----aaaatgtgtgcTAGAATCCGTT----CATaggttttttgcagaatgaatag
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17739   19283 7734 -   130595 I
e caeRem4.Crem_Contig0  1466034 243 -  4500979 I

a score=10007.000000
s ce10.chrX             4530213 134 + 17718866 TCTCTTAAATTTCACGCGTGTGTAAACTGGCAAGGATATGACGTCAATTGTATTC--AATTTCTTCCA-TTTCATTGCAGTTTTTAAAATTTTCC------AAGACG---ATTTTCGAATTCATTCT----------------TATTTTCTCA---AGAGTGTTT
s cb4.chrX              9828132 119 + 21540570 TTCATCAAGATTTTCTCATATGCCAATTA-----------ATGTCTATTGAATTTAACGTTTCTTCTA-G-------------------TTCTTC------Aatcaa---atgttcaatttcaCTTCAC--CCGTGAATTCAACGTGTTTTC----TGCATGACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1466277 145 -  4500979 TCTCTTGAATTTCACGCGCGTGTAAACTAC--AGGATATGACGTCAATTGTATTC--CATTTCAACCA-GATT-CAAACcccataaaaattcaaa------aatcag---aatctttGCTTCAGTTCGT--ATACAAAAATATATAGTTGTCA---TGCATCAcg
i caeRem4.Crem_Contig0  I 243 C 0
s caeSp111.Scaffold622   207415 149 +   386604 tttcttcaatttcacgCGCGTGTAAACCAG--AGGACATGACGTCAATTGTATTC--CATTTCAACAAGAATT-TCATGCTTTGAATAAGTCGAA------AAGctg---atttttcatctaaCCTTAC--TCTtgcaaaaagtttttttcccaCAACCACGCTG
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2775630 144 +  4147112 tttcttgaatttcacgCGCGTGTAAACCAG--AGGATATGACGTCAACTGTATTC--TATTTCATCTA-AATT-TTGTGCTCAgcaaaagtcaaatttttctattca---gtttttggttcaatc---------tgcagaaaataaatttctc---acCGTTTTT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17739   27017 131 -   130595 TCTTTTGAATTTTACGCGTGTGTAAACTGG-AAGGATATGACGTCAATTGTATTC--CATTTCAACTATGATT-TTGGATTTTG----AGCTAGA------AAtttggttgttttttgtttattccCGTTACCTTGAATAAACTT--------------------
i caeJap4.Scaffold17739 I 7734 I 61

a score=-9721.000000
s ce10.chrX             4530347 61 + 17718866 CAATGTG--------------AAATTAAAAAT--GAAAA----------AGTTTGAAATTCAAGTTCAAGTCTTTTAAAATGTTGTG
s cb4.chrX              9828251 41 + 21540570 TTATATC-----------------GAACCGAT--GAAGA----------AG---ATATT--TATTCCacgcattt------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1466422 67 -  4500979 ttctatttttaaaaaccagAAGAGTAACTAATGGGAAGA----------AT---AGAATGGCAGTTCACACATTCA-------TCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   207564 57 +   386604 CCAACTC--------------GGGTAAACAAC--AAGTAGAACTTTGTGGG---AGAATGCAAGTTCAcccatttt-----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2775774 51 +  4147112 CTAACTC---------------AGTAAACAAT--GAAAA----------GT---AAAGTGGAAGTTCACACAATTTG------TCTc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   27148 61 -   130595 I

a score=369.000000
s ce10.chrX             4530408 18 + 17718866 TAATTT---TTTTCT------CAACCA
s cb4.chrX              9828292 12 + 21540570 ---------tttttc------tgcaac
i cb4.chrX              C 0 I 207
s caeRem4.Crem_Contig0  1466489 21 -  4500979 TGATTTCTGTTTTGT------TACACA
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold622   207621 21 +   386604 tgatttctgttttgt------tACACA
i caeSp111.Scaffold622  C 0 I 30
s caePb3.Scfld02_0      2775825 27 +  4147112 tgatttctgttttgttaCCCATACACA
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17739   27209 17 -   130595 TAATTCGCCTCCACT------CA----
i caeJap4.Scaffold17739 I 61 C 0

a score=22694.000000
s ce10.chrX             4530426 143 + 17718866 -------------GCAC--------TTGCGTCTACATTTCTTGCAG----TATGAATT-------CAATCAAGTTGTATTGAATTAAGAA---------------------TTAACACAGTGTATAAG----CCTTGCCT-TCTCATAT------------------TATCAGATGTTCAACCGATTTCAACGTATGCAATAAACGTGAAAACTGCGTG
s caeRem4.Crem_Contig0  1466544 160 -  4500979 -------------GCACctcgaattttttcgtttctttcccCCCATCTTGCATGAATTTAATTTCCGATTAAGATCTATTGAATTATA----------------------------ATAGCGTTGACAATTCTGCTAGTTATATTTTAT------------------TATCAAATGTTCAACCCACTTCACCAAATggggaaaacgtgaaaatagCATT
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold622   207672 146 +   386604 --------------CAtcttgaaatgaatttcttctcttccttcat---------aTTCACTTCACAATTAAGATCTATTGAATTAGA----------------------------AGGGTGGCAAAGTTTCCGTCGGTT-TCTCTCAT------------------TATCAAATGTTCAGCCCTTATTGCCGTAGAG---AAACGTGAAAACAGCATG
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2775876 158 +  4147112 --------------CACCgtgaactttcttttttctcctccttcacATAACTGGAATTCAATTTACAATTAAGATCTATTGAATTATA----------------------------ATAACGCCGACGTTTCTCTCAGTT-TCTCCCAT------------------TATCAAATGTTCAACCCACTTCGCCATATGAAGCAAGCGTGAAAACATCATG
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17739   27226 195 -   130595 CTACTCGAAAAGTGCGTCTTGAACtcgattttttctattgtt------------agTT-------CGATCAAGCACTACTCAATTATAAAGTTTTTACATCCAATGTCTCGTTTCCATGGTCGTCTcgcctttttctttc-tttcttatcGCGCAAGCAAGCAGCAGTATCAAATGTTCAACC----TCTCCATATGCGAGAAACGTGAAAACGGCATG
i caeJap4.Scaffold17739 C 0 I 1944
e cb4.chrX              9828304 207 + 21540570 I

a score=3021.000000
s ce10.chrX             4530569 27 + 17718866 GCCATGGCATGCAAGA--TTCTTCATTTT-----
s caeRem4.Crem_Contig0  1466704 33 -  4500979 GGTTCGGCATGCCGAGG-GTCTTCGTTTCTTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   207818 29 +   386604 GCTTTGGCATGCTgtatcatcttcttttt-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2776034 27 +  4147112 GCATTGACATGACGGg--gtcttcatttt-----
i caePb3.Scfld02_0      C 0 I 887
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e cb4.chrX              9828304 207 + 21540570 I

a score=-3014.000000
s ce10.chrX             4530596 23 + 17718866 -----TCTAGTTTTC---TTCTTTTTGAGAA-------------------------------------------------
s caeRem4.Crem_Contig0  1466737 23 -  4500979 -----TACACTTTTC---TGCTataggagaa-------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 274
s caeSp111.Scaffold622   207847 80 +   386604 ctttgtacATTCTCCAAACTCGTCAAGAGaactttctgattttgtCGCCTGATTCTCAATTTGGACAGTCTGTTTGcaaa
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e cb4.chrX              9828304 207 + 21540570 I

a score=-1521.000000
s ce10.chrX             4530619  2 + 17718866 -----------------------------------------------------CG
s caeSp111.Scaffold622   207927 55 +   386604 tatcaaaatgttACTCTTTGTATTGTTTCTTTGATCACTTGTAAGTCAATAATCA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e cb4.chrX              9828304 207 + 21540570 I
e caeRem4.Crem_Contig0  1466760 274 -  4500979 I

a score=-6274.000000
s ce10.chrX             4530621  51 + 17718866 ATATG--------------GAATTGGTTTAAACTTGG-------TTAATAGGAA------------------------------------------------TTTAGTTTTTTTTTTCGA------
s cb4.chrX              9828511  32 + 21540570 ATATGAATA----------CGActaatttgaattaaa------------aaaaa------------------------------------------------------------------------
i cb4.chrX              I 207 C 0
s caeSp111.Scaffold622   207982 126 +   386604 ATGTGGGTATAGCGTGGTCTAACTTCTTTGAACTGAACCgcgagtttttcaaaatcagcgTACGTTTCCTGTACCCGTCGTTTCAAAGTCCATGCTTGCTTCCCTAGACTTTTTATGCAAATTcta
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e caeRem4.Crem_Contig0  1466760 274 -  4500979 I

a score=26480.000000
s ce10.chrX             4530672 96 + 17718866 TCTTTAAAAAACT-TTGTGAAATATGAACTTCGATGAAATATGAGAGGTTTTGCTCTCTTTTTTCTAACCTCGTGGTTGGCATTCTTGTTATCTTGA
s cb4.chrX              9828543 86 + 21540570 ------acaaactataGTGAAATATGAACTTTTGTGAAATTCGAACGTTTTTGTTCTCGTTTTTCAACTCACGTGCTTTAG-----TGTTATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1467034 97 -  4500979 TTTTAAAGAAACTATCGTGAAATATGAACTCTGGTGAAATTTGAACGTTTTTGTTCTCCTTTTACAATTCACGTGCTTTGTATTCCAGTTATCTTGA
i caeRem4.Crem_Contig0  I 274 C 0
s caeSp111.Scaffold622   208108 97 +   386604 cttttaaaaaactattgtGTAATATGAACTCTAGTGAAATTTGAACGTATTCGTTCTCCTTTTACAGATCACGTGTTTCGTTGTAGTGCTATCTTGA
i caeSp111.Scaffold622  C 0 I 210
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I

a score=727.000000
s ce10.chrX             4530768 8 + 17718866 ATATTTTT
s cb4.chrX              9828629 8 + 21540570 Gttttttt
i cb4.chrX              C 0 I 794
s caeRem4.Crem_Contig0  1467131 8 -  4500979 TTTTTCCT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e caeSp111.Scaffold622   208205 210 +   386604 I

a score=91.000000
s ce10.chrX             4530776 1 + 17718866 T
s caeRem4.Crem_Contig0  1467139 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 325
e caePb3.Scfld02_0      2776061 887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e cb4.chrX              9828637 794 + 21540570 I
e caeSp111.Scaffold622   208205 210 +   386604 I

a score=0.000000
s ce10.chrX             4530777 1326 + 17718866  
e caePb3.Scfld02_0      2776061  887 +  4147112 I
e caeJap4.Scaffold17739   27421 1944 -   130595 I
e cb4.chrX              9828637  794 + 21540570 I
e caeSp111.Scaffold622   208205  210 +   386604 I
e caeRem4.Crem_Contig0  1467140  325 -  4500979 I

a score=16198.000000
s ce10.chrX             4532103 44 + 17718866 CTACATTGTAGTCCACAACACCTGAGCACTCT-TCGAACAATCAT
s cb4.chrX              9829431 37 + 21540570 CTACATCGTAGTGCG------AAGAGCACTCCAATGAACAATA--
i cb4.chrX              I 794 C 0
s caeRem4.Crem_Contig0  1467465 41 -  4500979 CTACATTGTAGTGCGTCATT-GAGAGCACTCT-ATGAACAATC--
i caeRem4.Crem_Contig0  I 325 C 0
s caeSp111.Scaffold622   208415 41 +   386604 CTACAATGTAGTGCGTACTG-GAGAGCACTCC-ACGAACAATC--
i caeSp111.Scaffold622  I 210 C 0
s caePb3.Scfld02_0      2776948 41 +  4147112 CTACATTGTAGTGAATTCTG-GAGAGCACTCA-CCGAACAATC--
i caePb3.Scfld02_0      I 887 C 0
e caeJap4.Scaffold17739   27421 1944 -   130595 I

a score=29797.000000
s ce10.chrX             4532147 146 + 17718866 AGACTGTGTGGCTGAGCGTTCTCTCTGCAACCTTGTCTTCTTCTCAACATGACATGTGTCTC-TTGTCTCTTTTATTCCTGTcacacatcccgacacacactcacacacaca-----gatacacacgcTGTTGCCATCCCCCTATCACATGT
s cb4.chrX              9829468 113 + 21540570 AGACGGTGTAGC--AGTGttcttc---------t-------------cttgacacatgtctc-tcttc--------------tcatcatcttgattcttctctaaacactcttttctctGACACACGTTGTTGCCATTTCCCAATCACGTGT
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1467506 106 -  4500979 AGACTGTGTGGT--TGTGTTCTTCCGATAACCTT-------------CTCGACATGTGTCCAGTTTTC--------------TCTCCGTCCTGACACATC-----------------CCAACACACGCTGTTGCCATTCTCCTATCACATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   208456 101 +   386604 AGACTGTGT------TCATTGGCC----AACCTT-------------CACGACAAAtgtc---ttttc---ttc-------cttcacATCCTGACACACTTA---------------CACACACACGCTGTTGCCATTCCCCTATCACATGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2776989 110 +  4147112 AGACTGTGT------TCACTCTTC---AAACCTT-------------CTCGACATATGtcccattttctcattt-------tctttcatccTGACACACACACT-------------CATACCCACGATGTTGCCATCCCTCTATCACATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   29365 119 -   130595 AGACTGTGTCGCGTCGCGTTTATCTCTTCTCTTT-------------CAAGTGATGTTTTTC-CTCTC---TTTCTGTCTTTCATTTGGCCTGTTACATCC----------------AAGACACACGTTGCTGCCATTCCGCTATCACATGT
i caeJap4.Scaffold17739 I 1944 C 0

a score=-432.000000
s ce10.chrX             4532293 13 + 17718866 CGTTT-CTTCATCT-
s caeRem4.Crem_Contig0  1467612 11 -  4500979 --CTT-CTTCATCA-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   208557 11 +   386604 --TGT-CTTCGTCT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2777099 12 +  4147112 --TGTCCCCCATCT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   29484  9 -   130595 ------CTTTGTTTC
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9829581 10 + 21540570 I

a score=13516.000000
s ce10.chrX             4532306 213 + 17718866 TATTCCTCTCGTTTCCCACGC-----------CTGAACTTA---------CAATTGT--------------------------CCTCC-ACTGGTGG------TAATTGTTTTTCA--GATGGTT---TCGGGAGGCAAT----CG----------GCAAAGCT-----AATCAGTTGTCTAAAA-ATTACAGTAATGCTGACAATCACGCCACATTCGGCTATTGATTC----GAT----GGAAAGCACGCTTC-------------------------CCA---CTTTTTGATAAGCGTCCGATTGGGATGCAT-------CGTGTGTCTGT
s cb4.chrX              9829591 215 + 21540570 TAT-----TCATTTCTCACG------------GTGAACTtgcaattttctcaatttt--cc---ccaCAC-------------CAGCT-CCTGCT--------TTATTGTTCTA----GATTGTT---TCGGGAAGAGAAAACGGGAATCAATTTAGGGGA--------AATGATAGG-----AA-GGGACAGTTTTGCTGACTATCACGCCACATTCGTCTATTGATTT----GAC---------GTGCTTCTT-------------------------ACC---CTTTTTTCTA-----CTGATAAGAGATCTC-------GATGTGTCTG-
i cb4.chrX              I 10 I 1
s caeRem4.Crem_Contig0  1467624 218 -  4500979 ---------TATTTCTCACG------------CTGAActtgca--tttttcaattcttgca---CCAAACAGAATTT------TGGCTCCCTGCT--------TGATTGT--------AATTATT---TCGGAAGGGAAGAATGAG----------GCGGA--------AATCAGTTG-----AG-AGGACACTTCTACTGGCAATCACGCCACATTCGTTTATTGATTT----GATaa--aaaaaGCACAATTT-------------------------CCC---TTTTCTGATAAGCGTCCGAAATGAAAGCAT-------CGTGTGTCTGT
i caeRem4.Crem_Contig0  I 1 I 13
s caeSp111.Scaffold622   208568 230 +   386604 --------TCATTTCTCCCA------------CCGAACTTG---------CAATTTTCTCA---CTAAGAGGGCTGATGGCGGTGGCT-CCTACTTGGT----TTATTGTCCAT----Gatcatt---tcgagaaaaaga---gag----------gtgAAGTGATTATTATCAATTG-----AT-AGTACAGTTCTACTGACAATCACGCCACATTCGCCTATTGATTT-----AGAA-CAAAAAGCACATCTc-------------------------acccttttttt----------ctgataaagaATTCTACTTAGACGCGTATCTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2777111 237 +  4147112 --------TCATTTCTCACG------------CTGAACTTGCagtttttacaattttcgcA---CTGAGCGGGCTGCTGTTGGTGGCT-CCTGGTCGGTCAGATTATCGGCCGTGAAAGATAGTT---TCGGGAGGAAAA--CGAG----------GTTAA--------TATCAGTTG-----AGAAGTACAGTTTTGCTGACTGTCACGCCATATTCACATATtgattt----gatag-aaaaaagcaTGCTTC-------------------------ACC---ttttt----------ttGATAAGGAATCCT--TGCATCATGTGTCTGT
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17739   29493 253 -   130595 --------CCGTttctcacacacacacacacactgaACTtg---------caattttcgtccgtccgtac-------------ACTTT-TCTGCT--------GAATGCATCCG----AATTTTTCCCTCTAGAAGTACA---GAG----------GTAGA---------AGCAATCA-----AT-G----AGTTTTGCTGACAATCACGCCacattttactttttttttttttgataagcAGAAAATATTATTTGATAAAAGATAAAAGGAAAGCAAAAACC---GTCCcggatgaatgaatga-atgaatgcat--gaattgaaatgGCtgg
i caeJap4.Scaffold17739 C 0 C 0

a score=-6310.000000
s ce10.chrX             4532519 28 + 17718866 CCGCATTTCTGTCCTACATTATAAAAAT-
s cb4.chrX              9829807 20 + 21540570 --------CCgacgcatttttcgaaaag-
i cb4.chrX              I 1 I 9
s caeRem4.Crem_Contig0  1467855 20 -  4500979 --------Cagtttcattatttcaaaat-
i caeRem4.Crem_Contig0  I 13 I 9
s caeSp111.Scaffold622   208798  2 +   386604 --------cc-------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   29746 25 -   130595 ----ttctttttcttttttttttataagt
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2777348 17 +  4147112 I

a score=121040.000000
s ce10.chrX             4532547 292 + 17718866 ----TTTGCACTTCTAACTAGCTTTGAACAGAGTTGTTTCAAATAC--------------CGTCCTTTTTTTGCATTTGGCATCAATT------GATCAACTATCTCTCT--TCGACCATTTGGATCAATAGATTGAGAGAA---------------------------------------TGGGAAACAAAATACACGCTGGTTTTACCTTCA----CCCCA---TCCCACG-CCCGCTCTCTCGATTGTTTTGTTTGCCTTCTTGTCCTATTCTCATTTCGCTCCACACCACCTCACGGCCGCCACCCCGCCATTGAACCTACTT---TATTGAT---TTC--------TCAT---TATTACAGA---GGTCAAATGTTGGGA
s cb4.chrX              9829836 265 + 21540570 ----TTTGCa---------------------cttttcctaaaaaaa--------------aactgttcaaCGG----------CGTAT------CATTTGATGTATCTTTCCCCGATCATTCGAACAGAGAGACGGAGAGGATTG---------------------------------GGGAAAGAAACAAAACACACGTTAGTTTTACCTTCA----TTCCTTTCCTTCACGTCCCGCTCTCTTGATTGTTTTGTTTGCCTTCttgtcttcttctcatttcacCCCA--------AACGTCCGCCACCCC---GAAAACCCTACTT---TATTGATTTCTTC--------ACCT---TATTACAGA---GGTCAAATGTTGGGG
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1467884 249 -  4500979 ----TTTacg------------------------tttcaaaataat--------------aactGTTTGATTG-----------ATTT------AATCAACTATATATCTTTTCGACCGTTTGGATCAATAGATTGAGAGGA---------------------------------------AGGGAAACAAAACACACGTTAGTTTTACCTTCA----TTCCT---CCCCACG-CCCGCTCTCTCGATTGTTTTGTTTGCCTTCTTGTCCTCTTCTCATTTCACCCC----------ACCACCGCCACCCCCCAGTTGAACCTACTT---TATTGAT---TCC--------ACAT---TATTACAGA---GGTCAAATGTTGGGG
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622   208800 199 +   386604 -------------------------------cttttcttgaaaaaa-----------------------------------------------------------------------------------------gagagaa---------------------------------------agggaaaCAAAACACACGTTAGTTTTACCTTCA---TTTCCT---CCCCACA-CCCGCTCTCTCGATTGTTTTGTTTGCCTTCTTgtcctcttctcatttcaccCC----------ACCGCCGCCACCCCGTCTTTGAACCTact----tattgat---ttttattattattatttatattatAGA---GGACAAATGTTGGGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2777365 279 +  4147112 ----TTTGCACTTAT------------TCAATTTCGCTTGGAAAAC----GTacagtaataacttttttcccg--TTCGGCATCATTT------AATCAACTATATCTTT---CGACCATTTGGATCAATAGATTGAGAGAA---------------------------------------AGGGAAACAAAACACACGTTGGTTTTACCTTCA----TCCCT---CCACACG-CCCGCTCTCTCGATTGTTTTGTTTGCCTTCTTgtcctcttctcatttcacCCC----------ACCGCCACCACCCCGACGTTGAACCTActtta-tattgat---ttt--------ttat---tattatagA---GGTCAAATGTTGGGA
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17739   29771 344 -   130595 tttttttgctctttttgcaCTTCTCTTTTAGTGTTAGGGGAAGAAATTGGTTGCGTTGCGTGTAGTTTCCATGCGTTTATTATCATTTTACTCGCATCAACCA-ACTTATCTCCGACTAAATAGATCAATAGATGGagaagatggagaagaagaagaagaagaagaagaataagaagaagaagagaaacaAAACACACGTTGGTTTTACCTTCACTCCTCCCT---CTCCACA-CTCGCTCTC--AATTGTTTTGTTTGCCTTCTTGTCCTCTTCGCATTTTCTCCC----------------GCCACCCCGTCGTTGAACCtactttattattgat---tta---------------tgTTACAGAGACGATCAAATGCTGGGA
i caeJap4.Scaffold17739 C 0 I 42

a score=5263.000000
s ce10.chrX             4532839 30 + 17718866 ACATACAAC---GGTGACAGCAAAGCAGA---AACG
s cb4.chrX              9830101 33 + 21540570 ACCTACAAC---ACGGAGACCAAGCCCGACCTCTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1468133 30 -  4500979 ACATACAAC---GGTGAAAATAAACTTGA---ATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   208999 33 +   386604 TCATACAACAGTATGGATAACAAATTGGA---TTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2777644 30 +  4147112 ACATACAAC---GTGGAACCAAGGCCTGA---ATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   30115 42 -   130595 I

a score=221547.000000
s ce10.chrX             4532869 361 + 17718866 GATGGTAAT-TTTTCCACTATCTGTGAT-GATAGTTTACATTTTCTAT---------------TATTCAGGAAAAGACAACTCCATTTGTCATATCTGCAGTGATGTGGCGACTGGAAGACACTACGGAGCAATTGCTTGTAACGGATGCAAGGGATTTTTCAGACGAACCGTTCGACGGAACTATGAATATCATTGTAGATTTGAGTCGAAGTGTGAAATTGACAAGCGTACGTA---CCC-------TTTATTTAT-CCAAA--------TTAGTCT--------------------------AATTTTTTTATTCC--AGATAACCGCGCAGTGTGTCGTTACTGTCGCTTTATGAAATGTATTTCATCCGGAATGCGCGACGATCAAGTTCAAAGTGAAAGGGATGTAATTGGTAAAAGGT
s cb4.chrX              9830134 355 + 21540570 GACGGTAAG--------CGTTTTTGAAT-TAGAATTgctatttttttgtat------------ttttcaggaaaGGACAGTTCCATTTGCCATATTTGTAGCGACGTGGCCACTGGAAGACACTACGGAGCAATCGCTTGCAACGGATGTAAAGGATTTTTCCGGAGGACCGTAAGAAGAAATTATGACTATCACTGCAGATTTGAATCCAAGTGCGATATTGATAAACGTAGGTT---TTT-------CACAATTATCATGGCTCGAGTTGTGA-------------------------------------TAATTTC--AGATAATCGAGCAGTTTGTCGATACTGTCGGTTTATGAAATGCATAGCTTCTGGGATGAGAGATGATCAAGTTCAAAGTGAACGGGATGTTATTGGGAAACGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1468163 365 -  4500979 GACGgtatgtttctgtttttttcttgat-tgaaATCTTTgcaattttgtg-------------ttttcaggtAAAGACAACTCTATATGTCATATATGTAGCGACGTGGCTACCGGTAGGCATTATGGAGCAATTGCGTGTAATGGATGCAAAGGGTTTTTCCGGAGGACAGTGAGAAGGAACTATGATTATCACTGCAGATTTGAATCGAAATGTGAAATTGACAAACGTAAGT-----------------GATTAT-GTAACCAGAAATCTgaattt--------------------------atagttttcatttt--agatAACAGAGCAGTTTGTCGGTACTGCAGATTCATGAAATGTATTGCATCTGGAATGCGTGATGACCAAGTTCAAAGTGAAAGAGATGTAATCGGAAAACggt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   209032 361 +   386604 GACGGTTTG-------------TTtgac-ttgaaattttatttttttttcaatttttac----ttttcagGGAAGGACAATTCAATTTGCCATATCTGCAGTGATACAGCAACAGGTAGACATTACGGAGCAATTGCTTGTAACGGATGCAAAGGATTTTTCCGACGGACTGTCCGAAGGAACTATGATTATCACTGTAGATTTGATTCCAAATGCGAAATTGACAAGcgtatgtt---ttt-------ttgaattcc-cta----tatttcttgatt---------------------------atttctgt--ttcc--aGATAACCGTGCGGTGTGTCGATACTGCAGATTCATGAAGTGTATTGCATCTGGAATGCGAGACGATCAAGTTCAAAGCGAAAGAGATGTGATTGGAAAAAGGT
i caeSp111.Scaffold622  C 0 I 179
s caePb3.Scfld02_0      2777674 399 +  4147112 GACGGTTTG-------------TTTGCTATCCAACTCATATACCTTTATAAAGATTTG-----TTCTCAGGAAAGGACTCTTCTATTTGCCATATCTGTAGTGATGTGGCCACAGGAAGACACTATGGTGCAATTGCTTGTAACGGATGTAAGGGGTTTTTCCGACGGACAGTGAGAAGGAGTTACGAATATCACTGTAGATTCGaatcaaaatgtgaaattgaCAAACGTAAGCT---TTGCATCATatttgattct-ttaat--tttttcttaatttctttaattttctgtaaattcagattaatttctgtaaattc--AGATAACCGTGCTGTTTGCCGATACTGTCGATTCATGAAATGTATATCATCTGGAATGCGTGATGACCAAGTCCAGAGTGAAAGAGATGTTATTGGTAAAAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   30157 395 -   130595 GACActgtt----ttttctgttttttgt-taaaaattgtttcattcAATACAACGTACCTGTTATTACAGGCAAAGACAACACAATCTGCCACATCTGTAGTGACGTGGCAACCGGCAGACACTATGGAGCAATCGCGTGCAATGGCTGCAAGGGATTCTTTAGAAGAACGGTTCGACGAAACTACGACTACCACTGCAGATTCGAGTCAAAATGTGTGATTGATAAACGTATGTTATGTTG-------TTCCGGTTT-CGGAT--GATATCTTTTTCAAATGGATCATT---------------ATTACCGCTATTTTGAAGATAATCGAGCGGTTTGTCGATACTGTCGCTTCATGAAGTGTATCGCGTCGGGGATGCGTGACGACCAGGTACAAAGCGAAAGGGATGTGATAGGCAAAAGGT
i caeJap4.Scaffold17739 I 42 C 0

a score=-2212.000000
s ce10.chrX             4533230  4 + 17718866 --------------------------------GAGT
s cb4.chrX              9830489  4 + 21540570 --------------------------------Acgt
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0  1468528  4 -  4500979 --------------------------------cagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17739   30552 36 -   130595 GAGGTCGTGTTTGGGATTTTTGATCAACATATCAGT
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2778073  0 +  4147112 C
e caeSp111.Scaffold622   209393 179 +   386604 I

a score=-2966.000000
s ce10.chrX             4533234 35 + 17718866 ATACAAAGTTGAA--AATTTAAAACTTTTAAAAATTC---------------------------------
s caeRem4.Crem_Contig0  1468532 24 -  4500979 tttc-------------ttttctacttGTAAAAACTC---------------------------------
i caeRem4.Crem_Contig0  C 0 I 50
s caeJap4.Scaffold17739   30588 70 -   130595 TTACCAGGCCGAAATAGCTTtaattgtgggaaaattcaaagaaaaaatacatatcAAAAGATCAACTTTC
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2778073  0 +  4147112 C
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I

a score=603.000000
s ce10.chrX             4533269 70 + 17718866 GTATATGAGACATAAATAGAA--------TAGTAACTTTTTGATGGTTGATCTTACATTTTCAAAAT--ATCTTTTCACC
s caeJap4.Scaffold17739   30658 80 -   130595 TTTTATTAGATTTTCAAAGAACTccaaattaatatttttgtggtatttagtttttttttttttaattcaattttttcaaa
i caeJap4.Scaffold17739 C 0 I 392
e caePb3.Scfld02_0      2778073  0 +  4147112 C
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556 50 -  4500979 I

a score=0.000000
s ce10.chrX             4533339 6 + 17718866 CGTGTA
e caePb3.Scfld02_0      2778073 0 +  4147112 C
e caeJap4.Scaffold17739   30738 392 -   130595 I
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556 50 -  4500979 I

a score=-2192.000000
s ce10.chrX             4533345 227 + 17718866 ACACTATTGAAGCGTAGAAACGATGATTATTAGAACTAACTAATGACCAAAACTTTTCGAATACTTATTCAGGGGAAACTCAGATATTTTCAAGTCAAGCGAAACGATGAAGCTAAAATTATCACGTTATGATCTTTTGTTCTTAATGATGGAAAAGTATTATTAGTGAAGATTTAGACTAAATACGTCATGGTAATCAACCATGACTAAATGTCATACTCAAAATT
s caePb3.Scfld02_0      2778073  92 +  4147112 ATGCTATTGTTGAGTAGAAA-------------------------------ACTATAcgaat-----ttaa----------aaatattttc--------------------------------------------------------------------ctattAGTCAAGA--------AAAAGAGCCATG-----------TGCCTAAACAGAAcatc--aaatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   30738 392 -   130595 I
e cb4.chrX              9830493  52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556  50 -  4500979 I

a score=-804.000000
s ce10.chrX             4533572 25 + 17718866 AGTTTTTAAACA--AATTTT--------AGTCGTT
s caePb3.Scfld02_0      2778165 20 +  4147112 attttctgcTCC--AACGAT-------------TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   31130 35 -   130595 AGTTATTAAGCAAGAACGTTTTCTGGTAAGTTGTT
i caeJap4.Scaffold17739 I 392 I 108
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556 50 -  4500979 I

a score=-486.000000
s ce10.chrX             4533597 84 + 17718866 GCTGTAGATTTGAGACCAAGAATTGTTGAACATAAACATTGGAAAAGCAGTTAAAAATAATATTCGTAGAAAAAACCTTTTTTG
s caePb3.Scfld02_0      2778185 58 +  4147112 GGTTTAGAATCAAGA----GAATGG---------AACTTTGTGAGCTCTGCAAAACATA-CATGTGT------------TCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   31165 108 -   130595 I
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556 50 -  4500979 I

a score=-8715.000000
s ce10.chrX             4533681 112 + 17718866 GTCAACATCC-----------------------AAAGTTATGAT-------TTCAGTTTTTAC---CACTTTTTGACTGTAAATTTGAAAAATTAAACATTTTTGCACTACAGGATTTTTTAAAACCATTGATCAATCATGGAAA
s caePb3.Scfld02_0      2778243  32 +  4147112 ATCAAC-----------------------------------------------------------------------------------------------------------------CAACAACTTCTGATCAAACGGAATGT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17739   31273 138 -   130595 GTCAACACCCCGTGGTAACCGGGaaggaaattgaaaaacataATATGTAGCTTCAccttgtacatacatatttttggtatccaaatgaACAAAAGATCAGACTTAAAGCTCAACAATTTTTAGATTCAAT--TCATTCAT-----
i caeJap4.Scaffold17739 I 108 C 0
e cb4.chrX              9830493  52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556  50 -  4500979 I

a score=0.000000
s ce10.chrX             4533793 2 + 17718866 TT
e caePb3.Scfld02_0      2778275 2 +  4147112 I
e caeJap4.Scaffold17739   31411 0 -   130595 C
e cb4.chrX              9830493 52 + 21540570 I
e caeSp111.Scaffold622   209393 179 +   386604 I
e caeRem4.Crem_Contig0  1468556 50 -  4500979 I

a score=271841.000000
s ce10.chrX             4533795 387 + 17718866 TTGCAGAGAAAAAAAAGACAACATGAAAACCTATT---GTCAAGACCCGACTCCGAGAACCTCACCCGAACTAACAATGTCCCCAGTGGA---AGATGAGTACGATCAACTATTGGAAAGCCTCTTGAAGTCGGAGATGACGATTCAAAGTCTTCGTGATACAGTGATCACGCAGACCGGAAATGTGGAATACACCACCAAATCTAAGAATGTTTGTTTTA--GACCAAA------AAGCTG---TTCTTCTGGA------------------GGTTTCAAATTTCAGAGATTGTCCCACACAGACCGAACAGCAACTTTGAACGACGTCCTTAAATCCATGCACAGTCAACTTTTGCTGGTCATAGAATGGGCGAAAACACTGCCGGAATTTAAACAACTTTCCGGTGCTGATCAGGTAAG
s cb4.chrX              9830545 401 + 21540570 TtgcagagagaaaaaagacaatgtCAAAACCTACACGGCACATGATCCAACACCGAGAACATCTCCAGAACTCGCTTTATCACCT---AA---TGAAGACTATGAGCAGCTCCTAGAAAGTCTTTTAAAATCAGAGATGACAATTCAAAGTCTCCGAGAAACAGTGATCACTCAGACCGGAAACGTGGAATACACCACGAAATCCAAGaatgtttgttttt--tgactat------act------ttatttttcatttgaaaaaatta-aatcggtttcaaatttcagcgaCTTGCAAATGCGGATAGCACTGCGACACTGAACGATGTTCTCAAATCCATGCATAGTCAGCTTTTGTTGGTTATAGAATGGGCCAaaacaattccagaattcaCGCAACTTTCTGGGGCAGATCAGGTTAG
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0  1468606 391 -  4500979 atccagggagaaaaaagacaacGTGAGAAGCCATC---AACAAGAAGCAACACCACGAACATCTCCTGAATTAGCGTTGTCACCC---AACCCCGATGAGTTTGAAGAACTTCTGGAGAATCTTCTGAAGTCTGAATTGACAATACAAAGTCTCCGAGACACAGTGATCACTCAAACCGGAAATGTGGAATACACCACGAAGTCCAagaatgtttgttttt--tgactaa------aGTATGAACTTATTTTTCA-----------------AGGTTTCATATTTCAGAGACTTGCGAATGCAGATAGCACAGCAACACTGAACGATGTTCTCAAATCCATGCACAGTCAATTGTTATTGGTCATCGAATGGGCAAAAACACTTCCAGAATTCACGCAACTCTCTAGCGCTGATCAGGTTAG
i caeRem4.Crem_Contig0  I 50 C 0
s caeSp111.Scaffold622   209572 387 +   386604 tttcagggagaaaaaagacaacgTGAAGACTTTTT---GCGCGGAGCAAACACCAAGAACTTCTCCGGAATTGACACTTTCTACa---ag---tgaagaagatgatgtaCTACTTGATAATCTcttaaaatctgaaatgaCAATTCAAAGTCTTCGAGATACAGTGATCACTCAAACCGGAAATGTGGAATATACCACAAAAGCCAAGAgtgtttgtttttgatttttat------gtTCAG---ATCTTCTTAA-----------------AGGTTTCATATTTCAGAGACTTGCAAATGAAGATGGCACCGCTACACTGAACGATGTTCTCAAATCCATGCATAGTCAGCTTTTGTTGGTTATCGAATGGGCGAAGACACTTCCGGAATTCACACAACTCTCGAGTTCTGATCAGGTAAG
i caeSp111.Scaffold622  I 179 C 0
s caePb3.Scfld02_0      2778277 382 +  4147112 TTacagggagaaaaaagagaatgtgaAATCTTTCA---CTCATGAACCAACTCCGAGAACATCACCGGAATTAGCCTTGTCCCCA---AA---TGACGAATATGATCATTTGCTTGAAAGTTTGTTAAAATCAGAGATGACAATCCAAAGTCTTCGTGAAACAGTGATCACTCAAACCGGAAACGTGGAATATACCACCAAAGCCaagaatgtttgttttt--tgactaT------ATTCTG---TTCTCATT--------------------GGTTTTATATTTCAGAGACTTGCAAATGCGGATAGCACAGCAACATTGAACGATGTTCTCAAATCCATGCATAGTCAACTTTTATTGGTAATTGAATGGGCGAAAACTCTTCCGGAATTTACACAACTTTCCGGTGCTGATCAGGTaag
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17739   31411 410 -   130595 -TCCAGAGAAAAGAAAGACACTGGAAAATCCTTTT---GCAACGAAACGACGCCACGCACGTCTCCGGAATTGGTGATTACGCCGACAAT---AGATGAGCACGAATTTCTGTTGGATAGTCTTCTGAAGTCGGAGCAGACAATTCAAGGACTCAGGGATACTGTAATCACACAAACTGGAAACGTCGAGTACGCTACAATTatgaaaaatgtttgtttgt--tttttgtttgttggttttg---ccttttttgATTACTGTAAATAATTGAATGTGTCCAATTTCAGCGGATGGCTGAAGCTGACAGCACGGCGACGCTAAACGACgttttaaaatcaatgcaCAGTCAACTTTTATTAGTTATTGAATGGGCGAAGACACTTCCAGAATTTACCCAACTCTCAGGAGCTGACCAGGTTAG
i caeJap4.Scaffold17739 C 0 I 73

a score=-19275.000000
s ce10.chrX             4534182  64 + 17718866 ----AGC---CATTGAACAAAACTGGTCGGTTAGAGG----------AATTCCAAT------------------AAGATGTAAATTG-----------------------------ATAACGGAGTTC------------------------------
s cb4.chrX              9830946  33 + 21540570 CAAAAGAaagcattaaaaaaaat---------gcaaa----------agttC----------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 I 75
s caeRem4.Crem_Contig0  1468997 108 -  4500979 ----ACAGAACATtgaacaaaac---------gaaaa----------aactgtTAT--CGAACTtat-------aaaacgaaaaatgtgtGCATCATCTGTGCTTGATTCCGTATTAAAACTGCAATCAGA--ATGTATTCc----------------
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold622   209959 111 +   386604 ----ATCGAAcattgaacaaaaa---------gaaaaggcgTGACACAATTGTGAC--CGAACTTCACCGACAGAAAACGCAAAC-------------------------------AGAATTTCTATCAGataat-tcttcttttgataaGATAGTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2778659 107 +  4147112 ----aaagaacattgaacaaaaa---------agaaa---gtgattaaaaagtgacagtgaacctca-------aaaagacaaacga----------------------------gaaaaTTCCAATCGGATTGTGTATTTCTCTGATAAGAGAGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   31821  73 -   130595 I

a score=1877.000000
s ce10.chrX             4534246 24 + 17718866 TTTCGTCCTTTTT-TTGTTG-----ATTAC
s caeRem4.Crem_Contig0  1469125 18 -  4500979 tttcgtcttttcc------------aTTCT
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold622   210070 30 +   386604 TTTTGTCCTTTTTCCTATCGGAAGAACTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2778766 25 +  4147112 TCCCGACCTTTTTGTTACTG-----ATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   31821 73 -   130595 I
e cb4.chrX              9830979 75 + 21540570 I

a score=-6247.000000
s ce10.chrX             4534270 22 + 17718866 AAAGCAAGCACAACTGTACAAT-
s caeRem4.Crem_Contig0  1469143 17 -  4500979 GATAAGAGAACTCGTAC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   210100 22 +   386604 AGAAAGAACATGCATAGTAGAA-
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2778791 22 +  4147112 AATATCTATACgaattgttgaa-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17739   31894 23 -   130595 aaagcAACGGTCACTTGCAAAAA
i caeJap4.Scaffold17739 I 73 C 0
e cb4.chrX              9830979 75 + 21540570 I

a score=222904.000000
s ce10.chrX             4534292 376 + 17718866 TGTGTGCTAATCAGTTTTAACAAACCGCTA---AAGAAAA------TGAAAAAAAA---AACTT------------------CCCA-AGCTTTCAGGCCGTTCTTCTCAAAAACTTTGCTGGTCAGCACGTGACTCTTTGTGTGGCTTATCGCTCTGTTGGTGCAAATGACGCTTTGAAACTTCTCAACGATCTCTACATTCCAAGGGCTTCAAAAACCACACCACATCTGAAAGAATAGTA------AGAGGATGCTAGAATA--T---ACAATGTT--TTTAATGTTGCTTTTTAGTGTGGATGGATTCTATTTACGTGACTGTGAAAAAGTGATGGACCAGTTGGTGGAACCAATGCGATTTTTGAAGCTCGACAACAAGGAATTTGTGGCTCTCAAAGCTTGCGTTCTTTTCAATC
s cb4.chrX              9831054 365 + 21540570 --TGTGTTCTGCTGGTTTTTGAAACCTACC---Gagaaat----------aatata---aaaaa------------------aata---ttttcaggctGTTCTTCTTAAAAACTTTGCTGGACAACACGTGACCCTCTGCGTGGCTTATCGCTCTGTTGGAGCAAATGATGCATTAAAATTACTCAACGATTTGTACATtccaagagcttcaaaaacaACACCACATTTGAAAGAATAGTA------AGAATGAAtatagaaa--t---ttaaaaat--gtaaaaat---gtttcagtgTTGATGGATTCTATTTGAGAGACTGTGAAAAGGTTATGGATCAGTTGGTGGAGCCAATGcggtttttgaaacttgataaTAAGGAATTTGTCGCTCTCAAGGCTTGTGTTCTGTTCAACC
i cb4.chrX              I 75 C 0
s caeRem4.Crem_Contig0  1469160 389 -  4500979 ----TG-TCAGAAAGTAT---AAATTAATCCATGAGAAAC------TAAAAGTACA---AATgacttttatgtttttattgtGACA---TTTTCAGGCAATTCTTCTCAAGAATTTCGCTGGTCAACACGTGACCTTATGCGTGGCTTATCGTTCTGTTGGTGCCGCTGACGCGTTGAAACTACTAAATGATCTTTACATCCCAAGAGCTTCAAAAACAAATCCACACGTCAAAGAATAGTA------AGACTTGCAATAAAta--tcaatgaaaaataaataataag---tATTCAGTGTCGATGGATTTTACCTTCGAGACTGTGAGAAAGTCATGGACCAGTTGGTAGAACCAATGCGGTTTTTAAAACTTGACAACAAGGAGTTTGTTGCTCTGAAAGCGTGTGTATTTTTCAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   210123 354 +   386604 -------------------------TCACA---TGGAATC------TTGCAGTTAGTGAAACAA------------------CACAAAGTTTTCAGGCtgttcttctcaaaaactttgcCGGACAACATGTGACATTATGCGTGGCTTATCGCTCAGTTGGTGCAAATGACGcgttgaaacttttgaacgATATGTTTATTCCGAGAGCTTCTAAAATTACACCGCATATCAAAGACTAGTATGTTCCAGTACTTCTTGAA-----C---TCTACTAT--GAG-ACCG---TTTTCAGCGTTGATGGATTCTACTTACGAGACTGTGAAAAAGTGATGGATCAGCTTGTTGAGCCAATGAGGTTATTGAAAGTTGACAACAAAGAGTTCGTTGCTCTTAAAGCCTGTGTTTTGTTCAATC
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2778814 350 +  4147112 -------------------------tttct---CGGAAACAAAACTTCACAGTAAT---AAGAA------------------TACA-----TTCAGGCcgttcttctcaaaaactttgctGGACAACATGTAACCTTATGTGTTGCTTATCGTTCAGTTGGAGCCAGTGATGCATTGAAACTTCTGAACGATTTGTACATTCCGAGAGCATCAAAAACAACGCCGCATTTGAAAGAATAGTA------AGGGTTTTATGAAAAT--C---TCATCAGA--AAGAATCG---TTTTCAGTGTTGATGGATTTTATCTGAAAGACTGTGAGAAAGTTATGGACCAACTTGTCGAGccaatgagatttttgaaactcgaCAACAAGGAATTCGTAGCTCTCAAAGCTTGTGTTCTTTTCAATC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17739   31917 372 -   130595 ------CGCATCAAATTTCACCCAGTGTTT---CTGAAGT----GTCTGAAGCAGA---AAACA------------------TAAGAAGTTTCCAGGCTATCCTTCTCAAAAACTTTGCCGGACAACACGTGACACTATGCGTTGCATATCGCTCAGTTGGTGTCAATGACGCTTTGAAACTTCTCAATGATCTCTACATCCCGAGAGCTTCAAAGACTACACCGCACTTGAAAGAATAGTa------agaaaaacagtaaaaaggT---TTTAAAAC--AAGGGTCT---GATTCAGTGTCGACGGGTTCTACCTTCGCGACTGTGAAAAAGTTCTGGACCAATTGGTGGAACCAATGAGGTTTTTGAAACTGGACAGCAAGGAGTTTGTAGCGTTGAAGGCATGCGTTCTTTTCAATC
i caeJap4.Scaffold17739 C 0 C 0

a score=3090.000000
s ce10.chrX             4534668 4 + 17718866 CCGG
s cb4.chrX              9831419 4 + 21540570 CAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1469549 4 -  4500979 CAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   210477 4 +   386604 CAGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2779164 4 +  4147112 Cagg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32289 0 -   130595 C

a score=1638.000000
s ce10.chrX             4534672 3 + 17718866 TAA
s cb4.chrX              9831423 3 + 21540570 TAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   210481 3 +   386604 TAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2779168 3 +  4147112 taa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32289 0 -   130595 C
e caeRem4.Crem_Contig0  1469553 0 -  4500979 C

a score=273.000000
s ce10.chrX             4534675 3 + 17718866 ATA
s caeSp111.Scaffold622   210484 3 +   386604 ATA
i caeSp111.Scaffold622  C 0 I 24
e caePb3.Scfld02_0      2779171 0 +  4147112 C
e caeJap4.Scaffold17739   32289 0 -   130595 C
e cb4.chrX              9831426 0 + 21540570 C
e caeRem4.Crem_Contig0  1469553 0 -  4500979 C

a score=515.000000
s ce10.chrX             4534678 15 + 17718866 TTTTGTGAGGGAAAT
s caePb3.Scfld02_0      2779171 13 +  4147112 --ttttcagtgaaat
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17739   32289  0 -   130595 C
e cb4.chrX              9831426  0 + 21540570 C
e caeSp111.Scaffold622   210487 24 +   386604 I
e caeRem4.Crem_Contig0  1469553  0 -  4500979 C

a score=0.000000
s ce10.chrX             4534693 395 + 17718866 ATTGAGGCTTTTTAAAACAAAATTAGCTTAAAAATATTAAATGATAATATACATTGCAAAATTATTAGGAAAAACAATTTATTTTCTTAAAAAAATACAAAAAAATGGAGTACGGGCAGGTGGGGATTTCAATACGGTTCAAATGGTGCTAAAGGAACCAAACATCATAATAAAATTCTTTAAAAATGTTGTTCTGATTATGTTTAAATAGTTCATATTTCAACATTGTCGGGGCTCGAACATGTGACAATGCTTTAGTTTCCCAAAAATTTGGCTTTCACCACTTTTTGATTAGAAACAAATCCATAAATTTTTCGAAAAAATTTATCACGATCAAAATCATTTTTCCATTGGCAGTAGTCTACCTTTAGTTGTTCTAATGCATGTCAGCTATT
e caePb3.Scfld02_0      2779184   8 +  4147112 I
e caeJap4.Scaffold17739   32289   0 -   130595 C
e cb4.chrX              9831426   0 + 21540570 C
e caeSp111.Scaffold622   210487  24 +   386604 I
e caeRem4.Crem_Contig0  1469553   0 -  4500979 C

a score=345.000000
s ce10.chrX             4535088 15 + 17718866 ATCTTAAGCTCATAT
s cb4.chrX              9831426 15 + 21540570 ATTCAAAATGCACAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2779184  8 +  4147112 I
e caeJap4.Scaffold17739   32289  0 -   130595 C
e caeSp111.Scaffold622   210487 24 +   386604 I
e caeRem4.Crem_Contig0  1469553  0 -  4500979 C

a score=-71.000000
s ce10.chrX             4535103 14 + 17718866 --------------TAGAATAGCTTTCA
s cb4.chrX              9831441 20 + 21540570 --------TTTGTTcaaacgaattttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1469553 28 -  4500979 TAGGATAATTCTCGAAGACTGACTTTTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2779184  8 +  4147112 I
e caeJap4.Scaffold17739   32289  0 -   130595 C
e caeSp111.Scaffold622   210487 24 +   386604 I

a score=-2319.000000
s ce10.chrX             4535117 10 + 17718866 AAACACTAAT-
s cb4.chrX              9831461 10 + 21540570 aaaccctcAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1469581 10 -  4500979 TATAGTTCTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2779192 10 +  4147112 -aaaccaAAAT
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17739   32289  0 -   130595 C
e caeSp111.Scaffold622   210487 24 +   386604 I

a score=-1735.000000
s ce10.chrX             4535127 10 + 17718866 ATATTAATTT---
s cb4.chrX              9831471  4 + 21540570 ------ATTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1469591  7 -  4500979 ------CTTTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   210511 10 +   386604 ATCTTTGTTT---
i caeSp111.Scaffold622  I 24 C 0
s caePb3.Scfld02_0      2779202 10 +  4147112 CTACTATTTA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32289  0 -   130595 C

a score=103652.000000
s ce10.chrX             4535137 160 + 17718866 CAGTGGCACCGGGTCTATCCAACCATGCTGTTAATTTGGTCCTTAACGCAAGAAGGAAAATTTTCGCCGCATTCGAAAAATATGTAAGAGTGAACAAACCGCTGGAAACCACACGAGTCGGAGATTTGACATTTTTCATTCTCACACCGCTTTCGGTAAA-------------
s cb4.chrX              9831475 160 + 21540570 CAGTTGCTCCGGGTCTCTCCCCACCTGCTTGTAATTTGGTACTCAGTGCCAGAAGGAAGTTTTTCGcagcttttgaaaaatatgtgaaaGTCAACAAGCCATTGGAAACAACACGAGTTGGAGATCTAACCTTTTTCTTGCTCACACCACTTTCCGTAAG-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1469598 160 -  4500979 CAGTGGCGCCAGGACTATCAAATCATGCAGTAAATCTAGTATTAAATGCCCGGAGGAAGATATTTACTGCTTTTGAAAGATACATCAGAACAAACAAACCAATGGAACTAACACGTGTTGGAGATTTGACGTTTTTCATTCTCACACCGCTTTCAGTAAG-------------
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold622   210521 160 +   386604 CAGTGGCACCAGGACTTTCTTCTCACGCTTGCAACCTGGTTTTGAAtgccagaagaaaaatattttctgctTTCGAGAGATATGTGAAGTTGACTAAGCCAAATGAAACTACTAGAGTCGGAGATTTgactttcttcattcttaCTCCTCTATCTGTTAG-------------
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2779212 154 +  4147112 CAGTAGCTCCCGGGCTCTCTTCACATGCTTGCAATTTAGTTTTAAGTGCCAGAAGAAAGATATTTTCTGCGTTTGAACGATATGTGAAAGCAACAAAGCCGCTTGAAACCACCAGAGTTGGAGATCtaactttcttcattttgactCCACTTTC-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   32289 173 -   130595 CAGTAGCACCTGGACTTTCACCTATGGCTGTAAATTTGGTACTTAACGCTAGACGAAAGATCTTCACAGCTCTGGAGAGATATGTGAAGTTGACAAAACCATTGGAAAGCACACGAGTTGGAGATTTGACATTCTTCATTTTAACCCCTCTTTCGGTATGTTCAtactttcaa
i caeJap4.Scaffold17739 C 0 C 0

a score=1159.000000
s ce10.chrX             4535297 6 + 17718866 GCTTTT
s cb4.chrX              9831635 6 + 21540570 TCTTTT
i cb4.chrX              C 0 I 37
s caeSp111.Scaffold622   210686 4 +   386604 --TTGT
i caeSp111.Scaffold622  I 5 I 2
s caeJap4.Scaffold17739   32462 6 -   130595 attttt
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2779366 0 +  4147112 C
e caeRem4.Crem_Contig0  1469758 45 -  4500979 I

a score=-2939.000000
s ce10.chrX             4535303 33 + 17718866 --CTTTA----------GCATCTATTCGTACGATTTTGAATACAT
s caeSp111.Scaffold622   210692 28 +   386604 --ATGGA----------TTTTCTATAAtcgagatttttta-----
i caeSp111.Scaffold622  I 2 C 0
s caeJap4.Scaffold17739   32468 37 -   130595 ttcttgaaaaaatatatatgtaTGCACATAAAACTTC--------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2779366  0 +  4147112 C
e cb4.chrX              9831641 37 + 21540570 I
e caeRem4.Crem_Contig0  1469758 45 -  4500979 I

a score=142642.000000
s ce10.chrX             4535336 301 + 17718866 CAGGTTCTTTCAAAATCAATTTCGGAAGATATCATGTTCACAAAAGTCAGCGGTGTTGCGAGAATTGATGTTTTGATGGAAGAACTGATATTGGCTGAAACTGATTACGGGGAAGATAGACAAGGTATGTAATTAGTTAATAAAA------TTTATTCCTAAAATAATATTTTCAA------------------------------------GATCAAACTCCATGCTCAATTATGAACGA---------CACACCGTCGGGAAGCCAAGATATGTGTTCACCGTGCCCGGAGGATCTTCTGCGAACCTCCACTTCAAGCAACTCTCCCACAAACTCGTGAGTCATTTGTTT
s cb4.chrX              9831678 307 + 21540570 caggttctATCGAAATCCATTTCTGAAGATATCATGTTCACCAAAGTCAGTGGTGTTGCTAGAATAGACGTTTTGATGGAAGAGTTGATTTTAGCAGAAACAGATTATGGAGAGGATAGACAAGGTA------AAGAAGATATAAGATGACCCCATTTTTTATACCGTATGAAG---------CCGTTTCA---------------------GATCAAACCCCATGTTCAGTGATTAATGA---------CACGCCATCATGCAGCCAGGACATTTGTGGAATCCTTCCAGATGATCTTCTTCGGACTTCAACTTCCAGCAACTCTCCCACTAACTCGTGAGTCATTCTTTT
i cb4.chrX              I 37 I 28
s caeRem4.Crem_Contig0  1469803 302 -  4500979 CAGGtactttcaaaatcaatttcgGAAGATATTATGTTCACTAAAGTAAGTGGTGTCGCCAGAATAGACGTTTTGATGGAGGAACTAATACTAGCAGAGACTGATTATGTGGAAGATAGACATGGT-------TTGTATCTataa------ccgatttttttgaa---aagaagag-caTTTTCAGTTCCA---------------------GATCAAACCCCTTGTTCTATCATGAATGACATACCTTCCATACCTTCAGGCAGTCAGGATATGTGTGGA---CAGTGTGATGATATTCTCCGCACTTCCACTTCTAGTAATTCACCTACAAACTCGTAAGT---------
i caeRem4.Crem_Contig0  I 45 I 4
s caeSp111.Scaffold622   210720 320 +   386604 aaggttttATCGAAGTCTATCTCCGAAGACATAATGTTCACGAAAGTCAGTGGTGTCGCAAGAATTGACGTTTTGATGGAAGAGTTGATTCTGGCAGATGTTGATTACGCAGACGATCGACAAGGT-----------AGTTACAT------CTGATCTTTTAATCCACAtacttga--attttcagttgtaGAACAATCGTTTTCTCTCCTGGAACAGCCATCGTGTTctcttaaaaatga---------aatgccATCCGGAAGTCAAGATATGTGTGGACAATTAACCGACGATCTCTTGAGAACATCGACTTCCAGTAATTCTCCCACAAACTCGtgagttat----tt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2779366 305 +  4147112 --AGtactttcaaaatcaatctCTGAAGATATAATGTTCACAAAAGTTAGTGGTGTTGCGAGAATAGATGTTCTGATGGAGGAGCTGATACTAGCTGAAACTGATTATGCCGAAGACCGACAAGG---------------TACAA------ATGGTTTCTGATGACCTAGGTTCGattgtttcctgtttcaga-------------ttCC--GATCAAACTCCTTGTTCTATCATCAACGA---------CACGCCTTCCGGAAGTCAAGATATGTGTGGGCCAGGCCCGGAAGAGCTTTTGCGGACTTCTACTTCCAGCAACTCTCCCACGAACACGTGAGCTACTTTATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   32505 281 -   130595 CAGGTCCTCGCAAAATCAATTTCCGAAGACATCATGTTCACCAAAGTCAGCGGGGTCGCCAGAATCGATGTTCTTATGGAGGAATTAATTCTCGCTGATACCGACTATTCGGATGATCGCCAAGGTGAGGAATAAACTTATTAAG------ATTATT--------GATAAACAGAG-----------TTCA---------------------GACCAAACACCAGGTTCAATGATTCTTGA---------AACGCCATCTGGAAGC---GAAATGTGTAGT------CCAGAAGAGTTTGTTCAGAGTTCCCCAGCGAACACTTCTCCAACTAGCGCGTAAGTTT-------
i caeJap4.Scaffold17739 C 0 C 0

a score=2597.000000
s ce10.chrX             4535637 8 + 17718866 TCCTCTAT
s caeRem4.Crem_Contig0  1470109 7 -  4500979 TTCTC-AT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   211040 7 +   386604 ttctc-at
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2779671 7 +  4147112 TTCCC-AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   32786 8 -   130595 TTCTCTgt
i caeJap4.Scaffold17739 C 0 I 700
e cb4.chrX              9831985 28 + 21540570 I

a score=-2472.000000
s ce10.chrX             4535645 103 + 17718866 CA-----AAGATCGTTTCAAATGATCAA---GTCCAGCA----------TTTATTCCATCTTTATTTGCGGAAATTCCTCCTTCGCGGAGTTGTTTCAACAGAGTCTAGGGCGTACGAGTT
s caeRem4.Crem_Contig0  1470116  81 -  4500979 CA--------------------AATTCTTTGGTTTCCCATGTTCGTCTTTTTGCTCGACCG--------------------TAGACAAAACTGTTTCGATAGACTTTAGCGCATATGACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   211047  86 +   386604 ca-tgCGAA-------------AGTCAC---ACTCTTCAAG--------TACGTTCTACCA--ACGTGCG--------TTTCGGCCGGAACTGTTTCGATAGTGTCTAGCAGATACAAGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2779678  81 +  4147112 CACTGCAAAAATA----CAAAGAgtcac---attttcca----------tttgcTCTACTA-----------------------TTAAAAGTGTTTCAATAGAGTCTAGGAGCAATAAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9831985  28 + 21540570 I

a score=10611.000000
s ce10.chrX             4535748 17 + 17718866 -TTAATGAGCAAACACCA
s cb4.chrX              9832013 17 + 21540570 -TCAGTGAGCAAACACCA
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0  1470197 17 -  4500979 -GAGATGAGCAAACACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   211133 17 +   386604 T-CAATGAGCAAACACCA
i caeSp111.Scaffold622  C 0 I 283
s caePb3.Scfld02_0      2779759 18 +  4147112 CGTAATGAGCAAACACCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I

a score=-523.000000
s ce10.chrX             4535765 121 + 17718866 AAGGTGTGAACTGTGTGATCCTGCCCTC-----------AGTCCA-------TTGACGTTCA-----------TTTTGCAA-----------CTTATTGACGTAGACTTGGATATCGCCAGACGTAAAGCGATGAACTAGGTACATAATGTCAAATCTAAT-----
s cb4.chrX              9832030 146 + 21540570 ATTGTGCGATCTTTTTGAACCTccgttcttctttttgatacTTTGCTCCATTTTGATACTCCTACGTCTATCTTGCTGCAAAAAAGCTTCGGC-CATTGACGCGAAC------------------GAAATTGTGGATAAGGTACATAACGTGAGGGGAATCTGAT-
i cb4.chrX              C 0 I 141
s caeRem4.Crem_Contig0  1470214 141 -  4500979 ACTATGTGGTCTTTGTGAACTACCATTC-----------ATTTTG--------TGATGATCTGACGTTta---aagtcagaaaaaatttcagcgtaTTGACGTAGACTTGCTAAAAGCAAGG-GTGAAACGGTGCGATAAGTACATAATGTCAAGGTGACAAAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2779777 132 +  4147112 ACTGTACGAACTAACTGAACTTTCAT-------------AGTTTA--------TGACAATCC-----------TCTTGCAAAAACCGTTCAGAGTATTGACGTAGACAGGTAAAATTTATGA-ATGAGTCGGTGGGAAGCGTAAATattatcaaattgaaaaaa-g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e caeSp111.Scaffold622   211150 283 +   386604 I

a score=2317.000000
s ce10.chrX             4535886 36 + 17718866 -CTTTAACGGCCAAATTTTAAGAATGAGTCATTGATT
s caeRem4.Crem_Contig0  1470355 35 -  4500979 GTTCGATGGGTCAAC--TTAGCAATGAGTCATAGTTT
i caeRem4.Crem_Contig0  C 0 I 113
s caePb3.Scfld02_0      2779909 34 +  4147112 -ttcgaaggGTCAGA--CGATAACTGAGTCATTGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I
e caeSp111.Scaffold622   211150 283 +   386604 I

a score=-2656.000000
s ce10.chrX             4535922 539 + 17718866  
s caePb3.Scfld02_0      2779943 407 +  4147112  
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I
e caeSp111.Scaffold622   211150 283 +   386604 I
e caeRem4.Crem_Contig0  1470390 113 -  4500979 I

a score=0.000000
s ce10.chrX             4536461 106 + 17718866 ATATAACGATAACGACaactgaaatatgagctgccaaagttgaacaatgtgttgcaatactgatagaggaaataaggGCAAACATAAACCCAGGGTTTAACTGTTT
e caePb3.Scfld02_0      2780350  67 +  4147112 I
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I
e caeSp111.Scaffold622   211150 283 +   386604 I
e caeRem4.Crem_Contig0  1470390 113 -  4500979 I

a score=-197.000000
s ce10.chrX             4536567 30 + 17718866 AGTAAAAAGCCACCGGTTTTATTGATTAAT
s caePb3.Scfld02_0      2780417 18 +  4147112 attgaagaacC-----TTTCAT-------T
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I
e caeSp111.Scaffold622   211150 283 +   386604 I
e caeRem4.Crem_Contig0  1470390 113 -  4500979 I

a score=-2755.000000
s ce10.chrX             4536597  85 + 17718866 TCAAAA----TCAAACAATTAAGCTCATTT--------------TCGCAAAG---CTGTTCCCAATT---TTCAATG-TTCCCTCTTTCTGTGTTTTGCAAATTATGAAA
s caeSp111.Scaffold622   211433  66 +   386604 TCAAAA--------------------------------------TCACAACAATCTTCCCCCAAATCAAGTCGTTCGGTTCTCAATTCCA---TTTTgc---ttttcaaa
i caeSp111.Scaffold622  I 283 C 0
s caePb3.Scfld02_0      2780435 100 +  4147112 CCAAAATGTTCTAAGGAATTCATATTGTTTCACTGCTCCTTACGTCACAgca----tcattcaaatt---ttttctgcttatgtccttct---ttttgccttttttgcaA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I
e caeRem4.Crem_Contig0  1470390 113 -  4500979 I

a score=-1229.000000
s ce10.chrX             4536682 13 + 17718866 -GCTCCGAAATTT-C
s caeRem4.Crem_Contig0  1470503 13 -  4500979 -gtttcaaaacttg-
i caeRem4.Crem_Contig0  I 113 C 0
s caeSp111.Scaffold622   211499 10 +   386604 tgttctgaaa-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2780535 13 +  4147112 GGtcctaaacttc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I
e cb4.chrX              9832176 141 + 21540570 I

a score=15217.000000
s ce10.chrX             4536695 195 + 17718866 AAGAATCACATAGCATTTC---------CTTTTAATTACCCTATT--GGGATATCTCACGCGTTCCCTTTTCTTGCAAAA-CCATAAATTCAACACACTTGAATATTAACTTTTTTG-TGATCCCTTGCGGT---TAATAATGCCACCGTGGTGAAGGCACTTGAAAAATTTATTCCACTTTTTCCACGTCTTCCGGGATTTGCAAAACCC
s cb4.chrX              9832317 167 + 21540570 AAATATCTaatagttttt----------tcttgtttatcCCCCCGTTGGGATTCCCCACGCG------CGTTCAATAATC-CCATAATTTC------TCAcaa-atcaactttttca-aactccCTAGCGTTTCATAACAATACCACCATGTTGGAAA-----------TTTCTTAcg-tttttcttattcttttggGAATCGT-------
i cb4.chrX              I 141 C 0
s caeRem4.Crem_Contig0  1470516 170 -  4500979 -aaaactaaATTGTTTTTC---------CCCTGAATGTCTCCTCA--GGGATTCCTCCCGCGTTCCTTCATTTGTCAGTG-TCATAAAttca--acatcaaaatttctagtttttca-taATCCCCAGCGTT---TAATAATACCACCGTGTTAACAG-----------tttgtttcg-tttttgcaCATCTTCCGGGA---TC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   211509 171 +   386604 --------------cttttgaaatgcaATTTGAAATGGCTCCGTG--GGGACTTATCACGcgttcc--aatttttcaaac-ccaCGAATTGA--ACACTtcaa--tcatcttttttg-tgaTCCCCTGCGAT---TAATAACATCGCCCTGAAAACA------------TTTGTTCCC-TTTTTGCTAGTCAACCGGGAGTTGtaaattct
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2780548 181 +  4147112 ------aaaattctcttTCTTAATACGATTTTCAACGACTCTCTA--GAGACACCATGTACGTTCC--CTTTATTCTAATACCATAAATTCG--ATGTTTCAA--TCCCATTTTTTGCCTATCCCTTGCGGT---CAATTATACCGCcatgaaaaca------------taaatttgg-tttttgttcaTCTATCGGGAattgtaaaattc
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold17739   32794 700 -   130595 I

a score=-5697.000000
s ce10.chrX             4536890 35 + 17718866 CGTGAGTTGGCGGTGAATATTTTCAAG-------ACCACCAC--
s cb4.chrX              9832484 21 + 21540570 CAtaca--------------cttcaaa-------aattccat--
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1470686 38 -  4500979 CATgcatttggttt---tttcttcaaattttat-attgcTGT--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   211680 23 +   386604 ---------------------tttgaattcgaCAGATGTTATCA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2780729 20 +  4147112 I
e caeJap4.Scaffold17739   32794 700 -   130595 I

a score=-262.000000
s ce10.chrX             4536925 60 + 17718866 TAAATCAAAC-TAGCAGAACGAT---CGAACATTAATG-TGAA-----GAAAATTTTGCAGT----TTCAAAT-T
s cb4.chrX              9832507 57 + 21540570 TAAATCAAAC------TAACGGC---TAGGCAtcaatgatgaa-----aaaaagtctggaatg---ggcgaat-t
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1470726 61 -  4500979 TAAATCAATCAAACCAAAACGGC---TGAGCAtcaatgatg-a-----aaaaagtttacaat----GATATAT-C
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   211703 54 +   386604 TAAATCAAAT----TGTATTGGTGGTAGAGAAActatgatgaa-----aaagagt------------acaaaatc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2780749 64 +  4147112 TAAATCAAAG----TGGAATGAT------CAAATGATCGTGGATcaccaaaaagtttgaaactaaCGACAAAA-C
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17739   32794 700 -   130595 I

a score=32249.000000
s ce10.chrX             4536985 135 + 17718866 CAA---TTGTCACTTTTTTTGCAGATCTCTCACTGCCGGCCTCTTGCTCAAAACAGACGATGCTATGATGTCAGGAATCGGAACAC---AATACACAACTCCACAGTAAG------AAGTTTTTATTATAA--------------------------------------GTTTTAATTCTAAA-AA----
s cb4.chrX              9832564 131 + 21540570 gaaattttagtgTCTTTTTTGCAGAAACTTGTCAGCTGGGCTGATGCTCAAAACCGATGATGTGATCATGTCAGGCATCGCAGCAC---AATACACAAATTCACagtaag------aaaattttga-------------------------------------------agatttactGAAAA-------
i cb4.chrX              C 0 I 1295
s caeRem4.Crem_Contig0  1470787 174 -  4500979 GAa---ttatcgttttttttgcagaagttTGACGGCTGGTCTTTTGCTGAAAACGGATGACGTGATGATGTCGGGTATCGGAGCAC---AATACTCAACACCACAGTAAG---TaaaaaaaTGTGATATGACTATTGtatctgagaaaaaaattgctaCAGTTGCAAAGAGATTCTTTTTAAA-------
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold622   211757 132 +   386604 aaa---ttttcttt--atttgcAGATCGCTGACTGCTGGTCTTTTGCTGAAAACCGATGATGTCATGATGTCAGGAATTGGGGGAC---AGTACTCGAACCCACAGTAAGCCTCGAATAATTTTG--------------------------------------------CCATCATTCTCAATT------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2780813 128 +  4147112 AAA---TTATAgtc--tttttcagaactctAACTGCTGGTTTAATGCTCAAAACAGAAGATCTTATGATGTCAGGAATTGGGCCAC---GATATGCAAACCCACAGTAAGATATGAATATTTGT------------------------------------------------TCGAgttcaaat------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   33494 129 -   130595 CAA---TTCCCAT---TTTTGCAGATCTCTAAACAATGGACTGCTGCTGAAAACCGAAGACCCACTGATTTCCGGAATCTGTCCTTCTGAATATGGAACTCCTCAGTATG------AAAAATC----------------------------------------------AATCTaatcataaa---aaaa
i caeJap4.Scaffold17739 I 700 C 0

a score=-3871.000000
s ce10.chrX             4537120  7 + 17718866 TGTTACA------
s caeRem4.Crem_Contig0  1470976  3 -  4500979 tg----a------
i caeRem4.Crem_Contig0  I 15 I 7
s caeSp111.Scaffold622   211889  1 +   386604 ------A------
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2780941  1 +  4147112 ------a------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17739   33623 11 -   130595 --ttttattttta
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9832695 1295 + 21540570 I

a score=-9943.000000
s ce10.chrX             4537127 445 + 17718866  
s cb4.chrX              9833990 507 + 21540570  
i cb4.chrX              I 1295 C 0
s caeRem4.Crem_Contig0  1470986 426 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622   211894 460 +   386604  
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2780948 438 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17739   33634 598 -   130595  
i caeJap4.Scaffold17739 C 0 I 39

a score=2953.000000
s ce10.chrX             4537572 50 + 17718866 TACGACATCCCCTCTTCTCGGT--------------GCTCGTCTTGTTCGAGGGCGTGAAGC-GC
s cb4.chrX              9834497 40 + 21540570 GACGACAAAA---CTCC------------------AGTCCCGT---TTCGGAAGGGTCAAGC-GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1471412 54 -  4500979 TACGACATCT---CCCCCCGGC--------GTGATAGCTCCTTTTGTTCTGAAGCGTCAAACAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   212354 52 +   386604 TACGACGACA----TCCCCAAC--------GTGCCGGCTCCTTCCGTTTCAGAGCGTCATCC-GC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2781386 57 +  4147112 TACGACGG-------CCTCAACGTGTTGGGGTGTTGGCTCCTTCCGTTTCAAAGCGTCATCC-GC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   34232 39 -   130595 I

a score=60098.000000
s ce10.chrX             4537622 222 + 17718866 GTTATTACATTTT----GTTTGGCATTTGGCAGTG------CACCCCTAAAAATGGACGGAG-ATGGCAAGAGGGAAGTGATGTTTCAGTGAAGTCATGCTGA-AAATTGAG---GTCCATTTTGATGCACACTGCAGC--------------CAGG----TGCGTGGGTTCTTTGAAAAAATTCGCAGATGCTTTC----TAA---------------ATGGAGTTG---------AAACAAAGTTTGAG-----AATTTACA-------AGTTGTTCG--AAAATATATTATTCA
s cb4.chrX              9834537 225 + 21540570 TTTATTACATTTC----GCTCGACATTTGC-AGAG---------TCCTAAAAATGGACCAA-----GTGAAAGGGAAGTGATGATTCAATCCACTCatgcctgaaaattggatcGAGCCATTTTAATGTCCACTTAAAAAACGTACGTAACCACAAGTTTTTGCGTGGGATCTCCAAA-----------------------------------------GTGAAAATGG--------AA--AGTTTTTCCCTCCGAATTTTAAATCAGATTATTTGTTCT--AACATTCATTATTCA
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0  1471466 241 -  4500979 GTTATTACATTTT----GTTTGGCATTTGG-AGTGGTGGTGCACCCCTAAAAATGGACC---------GAGAGGGAAGTGATGTTTCAATCCAGTCATGCCTG-AAATTGGA---AGCCATTTTGATGCCCATTACAACAGGATGAAT-----CGAG---TTGCGTGGGATCTGTGAGATATTT----GATGATTTA----CAACT-------------ATGAGAGTGgttaaaataaa--agtttttgtc-----attttaaaTTAGGTTAGttatttt--taaatgtattATTCA
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold622   212406 245 +   386604 GTTATTACATTTT----GTTTGGCATTTGG-AGTG--------CACCCgaaaagggggaaa-------atgCGGGAAGTGATGTTTCAGTCCAGTCATGCTTA-AAATCGAAGGGACCCAtttttttGGCCATTAGAACAAGATAGAT-----TGAG--TTTGCGTGGGATCTATGAAATATTT----GATGATTTTG---CAGTATTTCGGTATAAATGTAAAAATG---------AA--AGCGTTTCAC-----ATATTATATTAGTTTGGttgttcc-aaaaatttattattca
i caeSp111.Scaffold622  C 0 I 76
s caePb3.Scfld02_0      2781443 232 +  4147112 GTTATTACATTTT----GTTTGGCATTTGG-AGTG--------Cacccaaaaatgg---aa-------aagcgGGAAGTGATGTTTCAGTCCAGTCATGCTTA-AAATCG--GCGAGCCATTTTGATGACCATTACAACTGGACAAAT-----TGAG--TTTGCGTGGGATCTATGGAATATTT----CAGGGTTAC----CAGCAAGTCg--------gccaaaata---------aa--attatttgac-----ATTTTATATTAGCTTAGTTGTTCCTCACAATTTATTATTCA
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold17739   34271 222 -   130595 tttattacatttttggagtttgacattttgcaacg---------aaaaaaaaacagaggaaACGAAAGATGAGGGAAGTAATGTTTCAGTTCAATCATGCTGA-AAATCGG----AGGCACTCTAaaattttt--------------------gcagtttttgcgTGGGATAACTGGAATATTT----GATGGTTTTGTTCTGG---------------CTGAAGCTAGG-------AA--GGAACTCGTG-----A----AAAccaac--aaatttttg--aaatttgagcATGCA
i caeJap4.Scaffold17739 I 39 C 0

a score=914.000000
s ce10.chrX             4537844 4 + 17718866 CTGA
s caeRem4.Crem_Contig0  1471726 4 -  4500979 TCGG
i caeRem4.Crem_Contig0  I 19 C 0
s caePb3.Scfld02_0      2781697 4 +  4147112 TCGG
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17739   34493 4 -   130595 TTGA
i caeJap4.Scaffold17739 C 0 I 3147
e cb4.chrX              9834762 13 + 21540570 I
e caeSp111.Scaffold622   212651 76 +   386604 I

a score=-3575.000000
s ce10.chrX             4537848 58 + 17718866 GCCATTCGATCGAAATTTTGCCAAT-----CCTCTCCCT----------------AGTCTGTAAAAA--TTACCATCCGGA----
s cb4.chrX              9834775 56 + 21540570 GGTGTGTAGT----ATTTTCGTACT-----TCTTTCACC--------------CACGTCCCTGAATATTTGGTAATGA--A----
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0  1471730 77 -  4500979 GTTGTTTGAT----ATTTTGGTCCTGTTGCTTTTTCTCCTCGCCAAAAATCTGCGTACCCATCAATGTATTATAATGAGGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2781701 55 +  4147112 GCTACTTGAT----ATtttgctcac-----tttttttca-----------------gccactCAA----TTATAATAAAGAGACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e caeSp111.Scaffold622   212651 76 +   386604 I

a score=50121.000000
s ce10.chrX             4537906 181 + 17718866 GAACAAAAATCAG--TTCATCTCTT------AGC----CA------------GTCATGTGCACCATATTAAT--------G-AGAACCACGTCAGGGTATTGCTATTACAATTGGACTTTGATGGAAAATGTTCCGGACGTGAC----ACATGAATATGTGGACTACTAC-----------------------TTTTTT----------------TGCACGAATGTGTGTATGCAA-------ATGTGATAGACTAATTTACAT
s cb4.chrX              9834831 212 + 21540570 --GATGGAATTAG--TTCATCCATA------AAA----GAAAATGTGACCATGTCATGTGCACAAAAATCATACGAAAAGG-AGCACCACGTCAGAGGATCACCATTAC-ATTGAACTTTGA-GATAG--ACtggaaaaaaagcaagaacatgaatatgcaaaaaattacGATGTTGATGAACTTTGT-----TTTTCT----------------TGCATAATTATG------------AGAgatgttctagaaaaattagcaT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1471807 224 -  4500979 --GACAAAATGAGAATCCATTCAGAAATCCCAAA----GCAAGCGTGACCTTGTCATGTGCACAAAATTAATGCGTA---G-AGCACCACGTCAGAGGATCACTATTAC-ATTGAACTTTGATGGTAG--GTTCCGGATGAACC----ACATGAATATGCGAACAGTCATGAT-----TGAACTTTGGAGA--TATTTT----------------TGCATGATTATGCATATAAAATGAATTGATGTTCTAGACTCATTTGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   212727 222 +   386604 GAATGGGAATAAG--TTCATTGAAA------AGACTGGGAAAACGTGAGCATGTCATGTGCAC-AAATTAATGCAGT---G-CGGACCACGTCAGAGGATCATCATTAC-AATGAACTTTCAGGAAAAATGTTCCGG----ATC----ACATGAATATGCGAACAGTCAACTT---TTTGGACTTTCTCGATTCCATTT----------------TGCATGAATATGAATA-GGAATTATTTGATGTTCTAGGTTGATTTGCAT
i caeSp111.Scaffold622  I 76 C 0
s caePb3.Scfld02_0      2781756 234 +  4147112 GAATAAAAATCag--ttcattcaga------aaa----aaaagcgcgAGGATGTCATGTGCAC-AAATTAATGCGAC---GAAGGGCCACGTCAGAGGATCATCATTAC-ATTGAACTTTGATGGAAAA-GTTCCGGACGTACC----ACATGAATATGTGAACAGTCATGTT---TATGAACTTAGCCAATTTTTcttatatctttttttttgctgcatGAATATGCA-----AGTTATCCAAAGTTCTAGACTCATTAACAT
i caePb3.Scfld02_0      C 0 I 1838
e caeJap4.Scaffold17739   34497 3147 -   130595 I

a score=546.000000
s ce10.chrX             4538087 1 + 17718866 T
s cb4.chrX              9835043 1 + 21540570 T
i cb4.chrX              C 0 I 4636
s caeRem4.Crem_Contig0  1472031 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   212949 1 +   386604 T
i caeSp111.Scaffold622  C 0 I 1355
e caePb3.Scfld02_0      2781990 1838 +  4147112 I
e caeJap4.Scaffold17739   34497 3147 -   130595 I

a score=182.000000
s ce10.chrX             4538088 2 + 17718866 AT
s caeRem4.Crem_Contig0  1472032 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 I 1184
e caePb3.Scfld02_0      2781990 1838 +  4147112 I
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   212950 1355 +   386604 I

a score=0.000000
s ce10.chrX             4538090 3491 + 17718866  
e caePb3.Scfld02_0      2781990 1838 +  4147112 I
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   212950 1355 +   386604 I
e caeRem4.Crem_Contig0  1472034 1184 -  4500979 I

a score=541.000000
s ce10.chrX             4541581 8 + 17718866 TGAAACTC
s caeRem4.Crem_Contig0  1473218 8 -  4500979 TGAAACTA
i caeRem4.Crem_Contig0  I 1184 C 0
e caePb3.Scfld02_0      2781990 1838 +  4147112 I
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   212950 1355 +   386604 I

a score=2125.000000
s ce10.chrX             4541589 19 + 17718866 -CTAGTTCAAAAAGTTGTCA
s caeRem4.Crem_Contig0  1473226 20 -  4500979 CTACGTACCTAAACTTGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   214305 19 +   386604 -CTCGTTCACAGAGTTGTCA
i caeSp111.Scaffold622  I 1355 C 0
e caePb3.Scfld02_0      2781990 1838 +  4147112 I
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I

a score=2167.000000
s ce10.chrX             4541608 45 + 17718866 GTCA-TCTTTTAGTCTGCGGTTGTCATTTTGAATGTTGGGTGAAAC
s caeRem4.Crem_Contig0  1473246 41 -  4500979 GTCA-TCTCAATGTCTGGAGTTGTCATTTGAAACA----AAGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   214324 42 +   386604 GTCATATTC-TTGCCTGAAGCTGTCATTTTAAACAGC-CAAGTA--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2783828 42 +  4147112 GTCA-ACTC--TGCCTGGAGTTGTCATGTTAAACCCC-GAAGTGTT
i caePb3.Scfld02_0      I 1838 C 0
e caeJap4.Scaffold17739   34497 3147 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I

a score=44513.000000
s ce10.chrX             4541653 136 + 17718866 AAATCCCGCAAGTTTTTATGATGTCACTCTCCATTGAAACGTCGCCCACGATTAGAAATAGAC-------AAGAGGAGGTT---GTAGATTTGTGAACCCTA-CATATTGAATTCTCCT------ATTTTTTTTT-------------TTGAATGTCAAGTCTACT
s caeRem4.Crem_Contig0  1473287 127 -  4500979 AAATCT---TGAGTCCTATGATGTCA--TTCAATTGAAACGTCGCCCACGATTAGAAATAGACAA-----AAGGGGAGGTT---GGAGATTTGTGAACTcta-aatattcaatttt------------tctattt-------------ttgactgaCAAGTCTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   214366 127 +   386604 AAATCT--CTAGCTAGCATGATGTCA--TTCAATTGAAACGTCGCCCACTATTAGGAATAGAC-------AACGGGAGGTT---GTAGATTTGTGAACTCTA-AATATCGAATCCC-----------GTCTATTT-------------TTGACTGACAAGTCTCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2783870 114 +  4147112 GAATCT------CTACTATGACATCA--TCCAATTGAAACGTCCCACACTATTTTAAATAGAC-------AAGAGGAGG----------TTTGTGAACTCCT-AATATTgaatct-------------tctattt-------------ttgacgGACATGTCTACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   37644 164 -   130595 AAGTCTCAATTGTTCTTATGATGTCA--CTCAATTGAAACGTCGCCCACTATTAAAAGACGACGCCGACTTAGATGAGGTTCGCGCCGATTTGTGGACTCTTCAAAATCAAATCCGTCttcattcttttcttttttcctttcgATTTCTTGAGTGACAACTCGACT
i caeJap4.Scaffold17739 I 3147 I 2107
e cb4.chrX              9835044 4636 + 21540570 I

a score=2987.000000
s ce10.chrX             4541789 409 + 17718866  
s caeRem4.Crem_Contig0  1473414 463 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1271
s caeSp111.Scaffold622   214493 432 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2783984 437 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I

a score=1653.000000
s ce10.chrX             4542198 21 + 17718866 GGGCGATTCGAAGCATCAGAA
s caeSp111.Scaffold622   214925 18 +   386604 AGT---TCCAAAACATCAAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2784421 18 +  4147112 AAt---tccaaaatatcaaaa
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeRem4.Crem_Contig0  1473877 1271 -  4500979 I

a score=69.000000
s ce10.chrX             4542219 2 + 17718866 GG
s caeSp111.Scaffold622   214943 2 +   386604 AG
i caeSp111.Scaffold622  C 0 I 1050
e caePb3.Scfld02_0      2784439 22 +  4147112 I
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeRem4.Crem_Contig0  1473877 1271 -  4500979 I

a score=0.000000
s ce10.chrX             4542221 43 + 17718866 CACAAACAACCCCGCGCGAAAATTCGATCATAACTCAAAACAA
e caePb3.Scfld02_0      2784439 22 +  4147112 I
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   214945 1050 +   386604 I
e caeRem4.Crem_Contig0  1473877 1271 -  4500979 I

a score=2553.000000
s ce10.chrX             4542264 348 + 17718866 TTTTGAAATTCGAAAGAAAACGTATATTTTCTTGCATCGGTTTTTTTCCTGAACGTCATAGGTTTCCTGTACCTTGTC------CTGTTAAGATTTACCAGT----TATTTTTGGATAAACGACGCTAATATCAATATTCATAGCTATATTCATGTGAAGTTCTCCTTTGTTAAGGAACATCACAAATCATATCTTTTCTGATTTTTCCGTTCACATAGAGTGATGCAGTTGATTAGTGAACATTGAGGATGTGCATTCAAAAAACGCCAGAATCACTGACCGGAAATTTGAATACATTAAAACCAAAGTTTTCCAATTGTACGTGTGTTCAGCAAAGTCTG-------------CTAGCTGATTTCTGAT
s caePb3.Scfld02_0      2784461 285 +  4147112 tgatgaaatttgatacaAAG---------TCTCCCGTCACTCCTT----------TCACGGGTTCTGGCTACTTCGGtggtcaatttttcattttcgccACTACAGtatttttgtagaa------ttcatatc--ttttcaaagaaaaaatcttttttcgtggccatttgtgatgtaac-------------tttttctttattttatctttc-----------tgcctttatttatC---------------------------------ACTTGCTGACCGGAAATTTGAATACATCGAA--CATTATTTTCCAGCTGTACGTGTGTTCAGCAACGTCTGATGCTATGTCATCATAACTGAATTCTGAT
i caePb3.Scfld02_0      I 22 I 763
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   214945 1050 +   386604 I
e caeRem4.Crem_Contig0  1473877 1271 -  4500979 I

a score=0.000000
s ce10.chrX             4542612 1628 + 17718866  
e caePb3.Scfld02_0      2784746  763 +  4147112 I
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I
e caeSp111.Scaffold622   214945 1050 +   386604 I
e caeRem4.Crem_Contig0  1473877 1271 -  4500979 I

a score=1732.000000
s ce10.chrX             4544240 12 + 17718866 CATCAACACCTT--
s caeRem4.Crem_Contig0  1475148 12 -  4500979 CATCAACATCCT--
i caeRem4.Crem_Contig0  I 1271 I 3
s caeSp111.Scaffold622   215995 14 +   386604 CATCAACATCTCTT
i caeSp111.Scaffold622  I 1050 C 0
e caePb3.Scfld02_0      2784746 763 +  4147112 I
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e cb4.chrX              9835044 4636 + 21540570 I

a score=19789.000000
s ce10.chrX             4544252 335 + 17718866 ACCTACGGTAGATTCGCGCCAAGGTGGTGGAGCGG---CCGTCAGTTA-CGCCCCG-CCCAATTGTATTTTATTCCTTTTTTCTTTCTCAATGTCTCTTTTAGCTGCACAATATTTCATA-------GTAGGAGGACTCAAGAAGAACATGAG---CCCAATGTCCTCAGAGGACGGACGCCACGCCTA-CTTAACAAACATATATTTAAAC----GGCTGTGTTGAAACTAAAATTATCCATTCTTCAGC----AGATT--TCCTT---------------------CCTTTTTTTTAG----------------------------TAA----------CGTTCCTAGGTTT----------ATGTGA-------------------------------------CTTCTCATTTTTTAAAAGTGT--ATATTCTTTTAC----CTTATAGACTTTGGT-----------GGTCTGTTAGAA
s cb4.chrX              9839680 365 + 21540570 ACCTACCGTAGATTT-------GGTGGAAGGTATGGCTCTGACcatga-agctccg-cc-----------ccttttgtTCCCTGCTCTGGAAACCTCTAGAAACTACAcgatatttcaaa-------------------ataaagaaCATCAGCCCTCGGGTGTCCTCA--------AAACTCCGCCCAGTTGGAAAAATAGCTATTTAAGCTTGAGGGGATGCTGAAACTAAAATTATCTTTCC-----C----ACTTT--CTCTCCACCTCCCAACCTCTCAATAGCTTTGCCTCTGG-----------------CCC-----AGCTGACCATCTTTCTCGCTTCTGGAACT-C-----TT-GAGTGG-----GAGGTCCTAAGGAACAAAAGATGGATTT----TATTTCCGTCTCTCCTCC-----TTTTTCCATTCT--------TCGGCCTCCGCT----------ATTTTTGTAAAA
i cb4.chrX              I 4636 I 24
s caeRem4.Crem_Contig0  1475163 384 -  4500979 ACCTACCGTAGGTTCAAG-CGGGGTGGCAG--------CTGTACGTAA-GGCTCCG-CCTA---------CTTTATGctctttcttttcgaaatctcCAGAAACTACacaatattttatgaaaaatgggtGGAGAACTCATGAAGAACATGAG--CTCGAGTGTCCTCACC--ACGGACGCCACGCCCA-TTTTACAAATAGCT-TAAAAGC----GAGGTTACTGATACTAAATTTATCCTTTC-----CTtaaatctt--ctctt---------------------ctttttctacgG------------------CT-----AGCTGATCGTCTTGCTCGCTTCTGGAACT-CACTTTTC-AAGTGGTCCATGAGAGGCT--GGAGCAAAAGATGGAATT----TATTTCCGTCGGTCCGGCTTCATTTTTTCCGCTCTACCTCTTCTAGACCCCCGC-----------GTTTTACCAACA
i caeRem4.Crem_Contig0  I 3 I 24
s caeSp111.Scaffold622   216009 401 +   386604 TTCTACTGGTGGTTCAAG-AGAGGTGACGG--------GTGTCCGTGA-AACTCCG-CCTA--------TTTTCGAGCTCTTTCTCTTCGGTTTCTCTTTCAACTACACTATATTTCGTGATAAATGGGAGGAGAACTCAAGAAGAACACGAG----------TCCTTTTC--TTGGACGCCACGCCCA-CTTCTGTAAATGCTATTTAAGCTGCGGAGGTT-CTGTAACCAAATATATCCTTTCTC--AC----ATCTCAACTCCT---------------------CCCTTTTTGAGAGCACCCACCACACTTTCCCT--------TGATCGTCGTGCTCGCTTCTGGAACC-CACTTGCC-ATGTGGTCCATTCGAGGCT--GGAGCAAAAGATGGAAAC-----TCTTCCATCTTTCGactttt--attctcttttcc----cttttagACCTACGCTCTTAGTTGATGTTCTATTAGCA
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0      2785509 410 +  4147112 ACCTACCGTAGGTTCAAG-CTGGGTGGTGG--------CTGTCCGACACGACTCCGCCCTA--------TTTTCCTGCGTTTTC-CCTCGTTTTCTCTAGAATCTTCACAATATCTCATGGTAGATGGGAGGAGAACTCATG-AGCCCATGTG----------TCCTTCTT--TTGGACGCCACGCCT--CTTTTAAACTGGCTATTTAAGAT---GAGGTTACTGAAACCGAATGTATCCATCTTC---C----ATCT---CTCGA---------------------ACCTTCTTCCAA--ACCTTCCACCTCTTCCCTAAAACAGCTGATCGCCCTGCTCGCTTCTAGAACCACGCTTTTCAATGTGGTCCATTTGAGGCT--TGAGCAGAATATGGGCACATATTCTTTCCGTCTTTTTGACTTT--CCTCTCCAACCC-ACTCCTTCCGGTCAaccttcccattttcaatttttggtgta
i caePb3.Scfld02_0      I 763 I 12
e caeJap4.Scaffold17739   37808 2107 -   130595 I

a score=-4121.000000
s ce10.chrX             4544587  7 + 17718866 ---------------AAAGCCA
s cb4.chrX              9840069  7 + 21540570 AG-----------ATATA----
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0  1475571 18 -  4500979 AGTTGCATAAAATATATA----
i caeRem4.Crem_Contig0  I 24 C 0
s caePb3.Scfld02_0      2785931  7 +  4147112 -----CA------ATCTA----
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17739   37808 2107 -   130595 I
e caeSp111.Scaffold622   216410 12 +   386604 I

a score=10296.000000
s ce10.chrX             4544594 103 + 17718866 TGTAAA--TGAG--CTCATGACTCAATGCTCAATTACCA-TATAG--TGATGCAAAACTGGAGT-TTTTAGAC---TT------GCATCTTTTTTCCACTTAGACACCCAGTTTCT-----CTGT
s cb4.chrX              9840076  96 + 21540570 TGCTAA--TAAAACCTCATGAGTCAGTTAGAC-TTACCA-TAAACG-TGATACAAGGTTTTTCTAGTATAAAT---TCTGCCA--------------ACCTAGACACCCA--CTCT-----GGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1475589 113 -  4500979 TGGTAA--TGAA--CTCATGACTCAATTTCCCATTACCATTAAATGATGCTAGAAGATTGTACT-TCAGAAATCTCTCTGCTAGCTTATTTTTATATACCTAGACTGCca--ttct-----caaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   216422 115 +   386604 TGCAAATCTTCT--CTCATGACTCAATATCTAATTTCCA-TAAAA--TGATGCAAGTCTAAAGT-TCGCAGCT-TCTTTCATagctatttcttttttacctAGACACCCa--ttct-agaagaaa
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0      2785938 104 +  4147112 TGCTAA--TTAT--CTCATGACTCAATACCCTATTTCCA-TAAAG--TGATGCATGTCTAAAGT-TTGCAGTC-----------CCAACTTTTTCTCACCTAGTCATCCa--tcccaagaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   37808 2107 -   130595 I

a score=52261.000000
s ce10.chrX             4544697 256 + 17718866 GCAAACAGATTCATCATCACG---AGAATTTTC------TTTGAGTTCATC----GTTTTTTTATAAATATCT----------------------------TCCACAAC---CAACCATCATTCATTTTCATTTCGCTTCCAT-TCTGAATCCAC-------------ACTTTCT-----GT--TTTTAGAAATCT-----TCAAA-CGGCGTACTA-------CATAATGTCCATCAAGGTCCTTATTTTTGTTGCTCTCCTTGTCATCGCCTTCCAGTTTGCCAGCGTCACCGAGGCTCGAAACGCTCCACCGATGACCCGTATTCAGGTAA
s cb4.chrX              9840172 257 + 21540570 AACAA---ATTCATCA-------------TCTAGGCATCTAtttattttactagtttttttctac--gtttta---------------------------ggtttttGAGTTCAACTATA-TTCGTTTCAATGTTT-----AT-TC---TTCATCACGAGCTTTTCC-Catcttttccgaat--ttccagaaatct-gCCCTCAGA-AA------------TGT-----CGTCGACTAAGATGTTCATCCTTCTCGCACTCGTCGTGATCGCCTTCCAATTTGTCACCATCTCGGAGGCTCGTAACGCTCCACCAATGACTCGTATCCAGGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1475702 271 -  4500979 acaaaaatattcatca-------------TCTA------TATGAGTTCAAC---TTTTCTGctacttgttttt---------------------------ctttcctaCACGCAAATAAC-ATC--TTGAATATTTCTCAGAT-TCACTTTTATTCCAAACCTacaa-catcttc-----at--ttccagaagTCT-TCACTCAGA-CAGCTTTCAAATCTTGTGAAAATGTCCGCCAAGTTGTTCATCCTTCTTGCGCTCGTCGCCATTGCATTCCAGTTCGCCACTGTCATCGAGGCTCGTAATGCTCCACCAATGACTCGTATCCAGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   216537 268 +   386604 acaaacacaTTCATCATGA-------GCTTCTA------TTTGAGTTCAAC----TATTCatcacttgttttt---------------------------ctttttaac---cAACC--------CTCTCATTTCT-TCAGAT-TAGGTTTTCTCTGATCATATTAACAAGTCTT-----AA--TTCCAGAAGTTC-TCCCTCAAA-CAGTGTACCCCAATTGACATAATGTCTGCCAAGTTGTTCGTTCTCCTGGCTCTCGTCGCCATCGCCTTCCAGTTCGCCACGGTCACCGAGGCTCGTAGCGCACCACCAATGACTCGTATCCAGGTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786042 290 +  4147112 acaaacacatTCATCATGA-------GCATCTA------TTTGAGTTCAAC----TATTCATAACTATTTCTTTGCTTACTTCTATTTCAACCCATACTACTTCATCAA---CAACCA-----CATCTTCATATTT-TCGTATATATTTTTCCTC------TATTAA-AACTCTC-----AGTTTTCCAG-AGTCC-GCCCTCAAT-TTGTGTCCCAACCCTGACAAAATGTCTACCAAGTTGTTCATCCTCCTTGCCCTCGTCGTCATCGCCTTCCAGTTTGCCACTGT---CGAAGCTCGTAACGCTCCACCAATGACCCGCATCCAGGTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   39915 250 -   130595 GTAAACACATTCATCAAATTGCTAATATTTCTT------GTTGAAATTGAA-----TTTCAccacctttttat---------------------------ttttagaac-----------------cTTTATGCAG---AAAT------------------GAATCA-TTTTCTT-----CC--TTCCAGAAATCCAATCCTCAAATCACCATTCCCGCTCCAACACCATGTCTGCTAAACTGTTCATTATCATCGCACTCATCGTCGTGGCATTTCAACTGGCTTCTCGAGCCGAGGCTCGTAGCGCGCCTCCAATGACCCGTATACAGGTGA
i caeJap4.Scaffold17739 I 2107 I 115

a score=7208.000000
s ce10.chrX             4544953 132 + 17718866 CATCATTT--TCTCAAAACTAAATCAAGTTTCAAG---ATAGATATGTCTAAAATAAGACTTCCTCATTAATTATCCCCT-CAA----------ATATAGAAAA-----CAGAGAGAAAAATCATCGAAACGGAAAATTTGTATTTGTAGGTT
s cb4.chrX              9840429 129 + 21540570 GAGTATACGTTTT-------GTATTATTCC--------ATCAGAAGTTCAAGCACATGCCCAT----CAAATTTTCCAGTAGACTAAGCatatgaaaaacaaga-----agaacatAGAAAGTAATCAAACGGAAGCTATGTCCTTGTAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1475973 128 -  4500979 GATAATTTATTTCCTTGTTGGAATTACTCT---------TAAGTAGCT--AACATGTGTCTTC----TGATGTTTCCACT-GAGTGAGCA----ATAAACAAGA-----AGAACATAAAAACTAATCAAACGGAAGTTATGTCCTTGTAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   216805 137 +   386604 GATCATGACTTCTTAAATTAGAACtagatttctaaaaaaaagaagaaacaaattaaTGTTCTCAACATCTTATTTCCACT-GACTGAGCATATG---------------AAAACCGGAAGTCCAATCAAACGGAAGATGTGTCCTTGTAAGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786332 142 +  4147112 gatcatttc-tctttttttagatGTACTTTCTT-----CTCGAATACTCTAAATAGTGACCAC----TAATGTTTCCACT-CAATGAGCACATAAAATAGAAGAAGTGCAAAACAGGAAGTCCAATCAGACGGAAGATATGTACTTGTAGATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   40165 115 -   130595 I

a score=-13434.000000
s ce10.chrX             4545085 32 + 17718866 ACT-----------------CCTTTTTCTAGTTTGTGAAAAA------------------TGTGTGG
s cb4.chrX              9840558 62 + 21540570 AAAATGATGTCAGAGGG----CGCATTtttctctgcaaaaaaaaacttcct-attttctctttctga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476101 54 -  4500979 ATGGTGATGTCAGAGGACAACCAAATTTT----------AGAAGACTTCC---TTTTTTGTTCCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   216942 56 +   386604 ACAATGATGTCAGCTGACAACCATTTTT-----------GAGTctcttcctcgtttttcgTTCCTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786474 63 +  4147112 GTTATGATGTCACGtgacaatcattttttcattca----tagtTTCTTTATTTCATTCCACTCCTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   40280 32 -   130595 ------------------ActcgcatttttatttttggtaaaATCTTTTG-----------------
i caeJap4.Scaffold17739 I 115 I 25

a score=6235.000000
s ce10.chrX             4545117 45 + 17718866 CATTTTGAATCTGTAGGTGGTGCAGATGTAGGGACAAAATATACG
s cb4.chrX              9840620 21 + 21540570 cattttaggctagtggGTGGT------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476155 28 -  4500979 CATTTTAAGCCTGTGGGTggtaaaaat-----------------g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   216998 36 +   386604 CATTTTAGGTTGGTGGGTGGTTAAATTTGAGAG---------GGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786537 36 +  4147112 CATTTTAAGCCGGTGGGTGGTTGAATTTGAGGG---------CGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   40312 25 -   130595 I

a score=6230.000000
s ce10.chrX             4545162 44 + 17718866 AAATTGCATATG-AAAGCAAAC---AAAAAGTTTCAAGT-----GACATCATT
s cb4.chrX              9840641 17 + 21540570 -------------AGAGCAAAT--AAAGGAGT---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476183 46 -  4500979 agaatgtgCATGAaaagcaaac--aaaaaagtttgaaat-----gacGTCAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   217034 47 +   386604 AGAATGTGTATGAAAAGCAAAT-AAGAAGAGGTGCACAT-----GACGTCAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786573 48 +  4147112 AGAATGCATATGgaaagcaaacaaaaaaaaagtttagat-----gACGTCGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   40337 47 -   130595 AATTTGTgcataaa----aaat--caaaaaactttatttataCCGACGTCACT
i caeJap4.Scaffold17739 I 25 I 21

a score=-13173.000000
s ce10.chrX             4545206 32 + 17718866 CGAAACTAA------------------------------ACTTTAAAATGTTGAG-TCTAGA--T
s cb4.chrX              9840658  6 + 21540570 -----------------------------------------------------------AGAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476229 63 -  4500979 TACGCTTACTACTTACTACTTCAAAGTTTGTGAGATCTAGATTTAGAA-ATAGCA-TCCTGaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   217081 30 +   386604 TATCCT-----------------------------------TTCGAAACgtttcagtttgaaaat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786621 34 +  4147112 TACACTCAT------------------------------GGTTTAGAATATTCTA-CTCAAAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   40384 21 -   130595 I

a score=79020.000000
s ce10.chrX             4545238 149 + 17718866 TTAACTAGATTTAAGATAGCTTGAA---------AATTATAAATACTTTTTTCATTCAGGAAGTCTTCCGCAGTCTCATGGCACCAGAAGAAATTCGTGGGAAAAAGTACTACCAGCAGTACGTCCCAAATGCTGAAAACCAATACTTCACCGAATGG
s cb4.chrX              9840664 126 + 21540570 TTTTCTGAGACT---------------------------AAAATAAATGT--GTTTCAGGAGGTCTTCCGCAGTCTCATGGCTCCAGAGGAGATCCGTGGAAAGAAGTACTATCAGCAATACATTCCAAACGCCG---GAGACTACTACAACGGATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476292 132 -  4500979 atttttgatattt-----------------------ttcaaaacaaatctcattttcaggaaGTTTTCCGCAGTCTGATGGCTCCAGAGGAGGTTCGTGGAAAGAAGTACTACCAGCAATACATTCCAAACGCCG---ACCAATACATCACCGAGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   217111 139 +   386604 ctgtttcaatttga---aacttG-----------AATTATAAATAGATAT--TTTTCAGGAGGTCTTCCGTAGTCTCATGGCCCCAGAGGAGGTCCGTGGAAAGAAGTACTACCAACAATACATTCCAAGTGGCG---ATCAGTACATTACCGAGTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786655 127 +  4147112 CTATTTGAAT------------------------AACCGCAAGAAATTA----TTTCAGGAGGTCTTCCGCAGTCTCATGGCTCCAGAGGAGATCCGTGGAAAGAAGTACTACCAGAACTACATTCCAAACGCCG---ACCAAAACCTCAACGAGTGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   40405 156 -   130595 TTATTTAGAACCTAAAGATCTTTGAGAtactattcatttttcaaaatttt--ttttcaggaggTTTTTCGCAGTCTCATGGCACCTGAAGAGATTCGCGGAAAAAAGTACTATCAGCAATACGGATCAAACGTGGATGGTCCATATTTCTCCGAATGG
i caeJap4.Scaffold17739 I 21 I 43

a score=-14402.000000
s ce10.chrX             4545387 40 + 17718866 T-AGTTAAA----TCGAGCGT-----------------------TTTTCTTTTTGCACCAAACC--ACCA
s cb4.chrX              9840790 55 + 21540570 TAGATGACAGGctcctttctcttcttctttaatTA---------TTTTCAACATATTTTA------ATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1476424 52 -  4500979 T-GATCACA----TCGTTCTCGTCTTCCCCAA-------------AATCGACATAATTTAACCAGTATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   217250 47 +   386604 T-AATTCCA----------CTGTCAACGatgcc-----------tttttttctcgtccATCACTA-ATTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2786782 64 +  4147112 T-GATTCTA----TCATTGCTAtcgacaacaacaacaacagccgTCTTTTACCTATTTTAACCCA-ATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   40561 43 -   130595 I

a score=-13669.000000
s ce10.chrX             4545427 61 + 17718866 ATC-------------------ATCAACCAAATCATTCACATTTTCTCACTTT---AATTATTACCATCTCCTTCAC-----CCTTCC
s cb4.chrX              9840845 44 + 21540570 ATCCTTTC--------------TTCCATC---TCGATCAA--------------------CTCACC--CATCTCCAT-----CCAACC
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1476476 79 -  4500979 ATCTTTTCATTCTCTGTTTCTGTCCCATC--ATCGTTCAAATTCaacactttta--ttttctcaccATTTTCCCCTT-----TCATCC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   217297 65 +   386604 CTCCCT-T--------------TTTAATcaaatcatcagaattcaACAATCTC---CACTCTTACCATCTccttcat-----tcattc
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2786846 63 +  4147112 CTCCTTCT--------------TTTAATTCAATCGTCTAAATTCAA-----------ACCCTCTTCATTTCCCCCATCTTTGTCCCCC
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17739   40604 64 -   130595 -----------------ATCGTCATCGTC--ATCGTCCCagttaatttaatttaattaactTTACTTTGTCTTTAAC-----TTTAAC
i caeJap4.Scaffold17739 I 43 C 0

a score=-12382.000000
s ce10.chrX             4545488 44 + 17718866 ----AAAGAGTCatgac------------aatgatattaataccaataataatattaata
s cb4.chrX              9840894 25 + 21540570 ----AATTACAAAAGAC------------AATGAT-----TTTCAA--------------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1476559 24 -  4500979 ----AAAGAGACAAGAC-------------ATGAT-----TTCCCA--------------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   217366  4 +   386604 -----------aAAG---------------------------------------------
i caeSp111.Scaffold622  I 4 C 0
s caeJap4.Scaffold17739   40668 33 -   130595 TTTGAATAATGCAAAATTCAAACCAAATCAATG---------------------------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2786909 17 +  4147112 I

a score=187610.000000
s ce10.chrX             4545532 433 + 17718866  
s cb4.chrX              9840919 466 + 21540570  
i cb4.chrX              C 0 I 1258
s caeRem4.Crem_Contig0  1476583 409 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   217370 412 +   386604  
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2786926 419 +  4147112  
i caePb3.Scfld02_0      I 17 I 11
s caeJap4.Scaffold17739   40701 449 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-9728.000000
s ce10.chrX             4545965 45 + 17718866 ----------ATTATAA--ATTACAATGTCGACAAATAAT--GGTTTCCTACAAGTTTA-
s caeRem4.Crem_Contig0  1476996 43 -  4500979 ----------tttaTAA--ATCATAAGA-CAAAAGCTATG--GTTAT-TGATAAAATTA-
i caeRem4.Crem_Contig0  I 4 I 307
s caeSp111.Scaffold622   217786 28 +   386604 ----------Ttcgaaa-------gata-aaaaagat-----------tAACAAAAT---
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0      2787356 46 +  4147112 ----------tttgaaataattttgttg-aaatacatatt--gttttctgattcaattg-
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17739   41150 57 -   130595 tttgtatttaatTAAAA--CTGCCATGG-CCATAAATGTTAGGTTGTTCGATAAATTCTG
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9841385 1258 + 21540570 I

a score=1880.000000
s ce10.chrX             4546010 11 + 17718866 TTATAATTTAA
s caeSp111.Scaffold622   217814  7 +   386604 ----Gcttcaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2787402  7 +  4147112 ----atttcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   41207 11 -   130595 TTACACTTTAA
i caeJap4.Scaffold17739 C 0 I 609
e cb4.chrX              9841385 1258 + 21540570 I
e caeRem4.Crem_Contig0  1477039 307 -  4500979 I

a score=-61.000000
s ce10.chrX             4546021 9 + 17718866 CTATTTGTA
s caeSp111.Scaffold622   217821 6 +   386604 t---ttcta
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2787409 9 +  4147112 cTAATTTTA
i caePb3.Scfld02_0      C 0 I 449
e caeJap4.Scaffold17739   41218 609 -   130595 I
e cb4.chrX              9841385 1258 + 21540570 I
e caeRem4.Crem_Contig0  1477039 307 -  4500979 I

a score=273.000000
s ce10.chrX             4546030 3 + 17718866 TTT
s caeSp111.Scaffold622   217827 3 +   386604 ttt
i caeSp111.Scaffold622  C 0 I 135
e caePb3.Scfld02_0      2787418 449 +  4147112 I
e caeJap4.Scaffold17739   41218 609 -   130595 I
e cb4.chrX              9841385 1258 + 21540570 I
e caeRem4.Crem_Contig0  1477039 307 -  4500979 I

a score=0.000000
s ce10.chrX             4546033 1532 + 17718866  
e caePb3.Scfld02_0      2787418  449 +  4147112 I
e caeJap4.Scaffold17739   41218  609 -   130595 I
e cb4.chrX              9841385 1258 + 21540570 I
e caeSp111.Scaffold622   217830  135 +   386604 I
e caeRem4.Crem_Contig0  1477039  307 -  4500979 I

a score=402.000000
s ce10.chrX             4547565 18 + 17718866 ATTTGATATTC--ATTTTTA
s caeSp111.Scaffold622   217965 20 +   386604 ATCTAATATTAGAACTTttc
i caeSp111.Scaffold622  I 135 C 0
e caePb3.Scfld02_0      2787418 449 +  4147112 I
e caeJap4.Scaffold17739   41218 609 -   130595 I
e cb4.chrX              9841385 1258 + 21540570 I
e caeRem4.Crem_Contig0  1477039 307 -  4500979 I

a score=-236.000000
s ce10.chrX             4547583 8 + 17718866 ATATTTCA--
s caeRem4.Crem_Contig0  1477346 8 -  4500979 --ATATCCAG
i caeRem4.Crem_Contig0  I 307 I 1
s caeSp111.Scaffold622   217985 8 +   386604 ctatttca--
i caeSp111.Scaffold622  C 0 I 6
e caePb3.Scfld02_0      2787418 449 +  4147112 I
e caeJap4.Scaffold17739   41218 609 -   130595 I
e cb4.chrX              9841385 1258 + 21540570 I

a score=-242.000000
s ce10.chrX             4547591 15 + 17718866 AAAACAGA-----------GAGGCAT
s cb4.chrX              9842643 15 + 21540570 -aaGGAAG----------AAAAACTA
i cb4.chrX              I 1258 C 0
s caeRem4.Crem_Contig0  1477355 17 -  4500979 -Aagcaaa--------ttgaaaactt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   217999 26 +   386604 ataatgAAAGCATTTCATGAAAACTG
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2787867 16 +  4147112 aaaacgaa----------gaaaacta
i caePb3.Scfld02_0      I 449 C 0
e caeJap4.Scaffold17739   41218 609 -   130595 I

a score=193338.000000
s ce10.chrX             4547606 345 + 17718866 ACTTTTATCAACTCCTCCTGATAACACAGCAATCTTCACGCATCCAAAAAATCCGTACTGACATGAAGTTGCACTGTAAACACACTCGGTTCCTTGTGAAGATGTGCATTCGTAGCAGTTTATACTTTTTGTGTTTTTG---ACGACGAGAACAAGAAATAATATGAAAACAAGAACTGAGTT----------CTTG---G--------------GAGACCGTAGCCGCA---TATTCCGGGAAA---TGTACAGACGCGTTCAGTGATGGTCGG--TATTATTTGAACAGCA-TCCTAA-----------CATAT-TCTGACTAATACATATGTTATGGTCATTTC--TATGAATGCATGTAATCG----TCGTTTGCTTTTCAACACC---ATCTTCCTCCT-----C
s cb4.chrX              9842658 366 + 21540570 ACTTTTATCCACTCCACCCGACAATATCGCGATTTTCACACATCCAAACAGTCCGTATTGACAGGAAGTCGCACTGTAGACACATTCGATTCCTTGAGATGAAGTGCATTCGTAGCAATTGATAGAATTAGAGCTGGGT---ACTAGTAGCaaaaaa---aCGAATATGGTTGAAATAATGCT----------ATTA---GAAactct--tctgaaattctgta---gCATTTTCGTGCGGGAAATATTGTAAGCA-----TATGCGATGGTGGTTCTCTTATTTGATCAGCATTCCTGGGgaatcgtcttcttct-tctgactAATACATATGTTATGgtcatttctttttga----atgtAATCG------GTTTGCTTTTCCATTTCTA----CACATACACGAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1477372 337 -  4500979 acttTTATCTACTCCTCCTGataaaattgcaattttgaCACAACCGAATAATCCATATTGACAGGAAGTTGCACTGTATACGCATTCAGATCCTTGTGAGGATGTACATTCGTAACAGTTGATTCCACTAG---TAGGTTTCACtaataacagaaaaaacactgaaatagCCAAAGTAAAGTT----------CTGG---AGAACTGT--CC---GATGCTGTA---GCA---TCATGCGGAAGA---TGTAAGCACGCGTTCTGTGATGGTCGG--TCTTATTTGATCAGCATTCCCAG-----------CATTT-TCTGACTAATACTTATGTTATGGTCATTTC--TTTGA----ATGTAATCT----TCGTTTGCTTTACAATTTC-------------------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218025 348 +   386604 ACTTTTGTCGACTCCTCCTGACAATATTGCAATTTTCACACATCCGAATAATCCGTATTGACATGAAGTAGCACTGTATACACATTCGGTTCCTTGAGAAGACGTGCATTCATAACAATTAATAGATTCAGTTCTAATG---ACaaatagaaacaaa---aggaagaaaatatagaagacgtt----------tttg---aaatgtat--tC---GATTCTGTA---TCA---TATTCGGGAAAA---TGTGTAGACGTGTTCAGAGATGGTCGA--TATTATTTGATCAGCA-TCCTAG-----------CATTTCTCTGACTAATACATATGTTATGGTCATTTC--TTTGA----ATGTAATCT----TCGTttgcttttcaatttctaacATCTCTTCCG-----C
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2787883 343 +  4147112 ACTTTTATCAACTCCTCCTGAAAGAATTGCAATTTTTACACATCCGAATAATCCGTATTGACAAGAAGTCGCACTGTACACACATTCGGTTCCTTGTGAAGAAGTGcattcatagcagttgatagaTATTGTGTTCCTT---ATTAATAAAGATAGA---AGAAACAGAGTAAGAACAAAGTT----------Cttggaaaaatgca--------aattctgTA---TCA---TATTGTGAGAAA--------ACACACGTTCAGTGATGGTCGAG-TCTTATTTGATCAGCA-TCCCAG-----------CATTT-TCTGACTAATACATATGTTATGGTCATTTC--TTTGA----ATGTAATCT----TCGTTTGCTTTCCAAATTCTAACGTCTCTTCCA-----C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   41827 355 -   130595 ACTTTTATCAACTCCTCCTGATAATATTGCAATTTTTACACATCCAAAAAGTCCATATTGACAAGAAGTTGCACTGTAGACACAATCAGTTCCTTGTGATGAGGTACACTCGTAGCAATTTATGGCACTAGCGGGGTta---ataaacaacaaaaataagaagaatATAACATGGAAAAACTTGAACGAATTCCTCG---AAAACCATAACC---AAATTTGTA---GCA---TGTTCCGGAAAA---TATGAGAATGCAT---GTGATGGCCGG--TCTTATTTGATCAGCA-TCCTAA-----------CAACT-TCAGACTAGCGCATATGTTTTGGTCATTTC--TTTGA----ATGATATCGTTCGTCGTTtgcttttc--tttctttcttcac-----------
i caeJap4.Scaffold17739 I 609 I 127

a score=41691.000000
s ce10.chrX             4547951 154 + 17718866 CGTCTGGAA-------GTGCAACGCATCGAAACGCCCATCCCTT----ATTTGTACTTTAG-AT-GCTTTTTCTCGAAGCATA---TTGTGCTGT-ACAGTATAGTCAATTAAC--------AGGTGA-----ATTCCCATCAGATACATGCATCCGTGAGAAAATGACAATTGGCACACAGCG
s cb4.chrX              9843024 152 + 21540570 CATCTGAAAAGAGA---------------AGACGCCCATCCCTTCAAAAGTTGTACTTGTG-TT-GACTTGTAT-GCTGCATA---TTGTGCCGGAATACCATGCTCAATTAAT----ACGAAAGGAT-----ATTCCCTCATTACTTCTGCAGCCGTGAGAAAACGGTGATTG--TCACAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1477709 147 -  4500979 TGTCTGAAAAGCGACA-----------TGAAACGCCCATCCCTC----ACTTGTACTTGTGAAT-AACTTGTA--GATTCATATTGTTGTACCATTATACTACAGTCAATCAAC--------GAGAAT-----ATTCTCATGCAG----TGCAGCCGTGAGAAAACGGTGATTG--TCACAGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218373 163 +   386604 CATCTGAAAAGACCAAGTGCAATGTGATACGACGCCCATCCCTT----ACTAGTACTTTCA-ATCGAATC-----AATTCATATTGTTGTGCCATTGAACCGTAGTCAATTAATTGAAACACAAGAAT-----GGTCCCAGTGGG----TGCAGCCGTGAGAAAACGGTGATTG--CCGCAGCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788226 171 +  4147112 CATCTGAAAGGAAGAAGTGCAATGTTGTACAACGCCCATCCCTC----ACGAGAACTTGCA-AT-GACTTATGG-AATTCATATTGTCGTACCATTATACTACAGTCAATTAACATGAACACAAGGATATTCAGTTCCCATCGTG----TGCAGCCGTGAGAAAACGGTGATTG--CCTCAGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   42182 127 -   130595 I

a score=-22442.000000
s ce10.chrX             4548105 276 + 17718866 GGTAACTTAAACTACCTACACGAGCGTCTCCAGCTCATCTTAA---TATAGCTCCT---CAATAGGCTCACTC-AGTGTTCTTATT--CATATAAATCGGATAATCGACGAGTGC----------AGTAT-CGAGATGTCGAGCAAAAGTGTTGTCCTTGAAT---AATGATTGTGTGAAC--CT-----A--T-------------------------TTACCCGAGGTCATGAGAAAAGTCAATTGGGGAGTTC-GGCTG------TCATTA-----AGAAATTTGCAACACGACTTGGGTAC---TTG--------------TGTAGTATACCTGGCCCTAAAATATTGACCATTTTGA
s cb4.chrX              9843176 307 + 21540570 GGCTGCCATAG---------CGAACAACTAGTGTTCGTCTTAATGGTGGAATGCTCCTTGAATAGGCTCACTCAAATGTTCTTATTCCCGTATAAATCGGATAAT-GATGGGCACCTCGAAGCAAAGTAT-CCAAATGTCACG--AAAAT--TGCCCT----------TGATTATGCGAGTCGCTGAGTGATTTtagctctctctctctctcttcgtCGTTTTCGAAGGTCATGAGAAAA-----TCAAAGTGTTGAGAATGGTGGCTTTGGTG-----ACACACATGTGAC---ACCGGGTAAT---TTGAATGGAGAAGGTACTGTAG--------------AAATCCTCAAGGTGTTAA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1477856 257 -  4500979 GGTGTCCTGA------------AACAACT--TGCTCGTCTTAA---TAGAGTACTCAAT-AGGAGGCTCATTC-AATGTTCTTATT--CGCATAAATCGGATAAT-GACGGACAC---------GAGTAT-CTCAACGTCAAG--ACGTTGCTGCCTTTGAAT---AATGATTATGCGAGT--CTGAGTGA--TTAGCTCCTT----------------TTTTCCAAGGCCATGAGAAAAGTC-GTTGAAGTGTTG-GATTGGTTGGTTGTTGA-----AGACACCTGTGGC---ACCCCGTAAT---TTA--------------AATAG--------------AAAC-------GTGttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218536 216 +   386604 GGGGACCGAAGTG------ATTTGCGAAC--AGCTTTTCTCAA---TGGAGCTCTC------------------AATGTTCTTATT--CATATAAATCGGATAAT-GATGGGCATCTAGTATCTGAATGTTCTGAATGTCAAG--AAACTATTGCCCTTGAAT---AATGATTATGCGAAC--CTGAGTGA--CTAGCTCTTAA-----------------AGTGAAGGTcatgagaaa------tgaagattttg-gaTTAAGTGACGAGTTG-----------------------------AT---TTT--------------TA-----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788397 233 +  4147112 GGAGGTC-------------TCCTCAACT--TGCTCATCTTAA---TGATGCTCTC------------------AATGTTCTTATT--CATATAAATCGGATAAT-GATGGA-----GGCATGGCAATACATTGAATGTCAAG--AAACTGTTGCCCTTGAAT---AATGATTATGCGAAC--CTGAGTGA--TTAGCTCTTCAG--------------TGGATCAAGGCCATGAGAAA------TTGAGGTGTTG-AATCGGATGAAAAATGGTGAATACAGGTGTATGGT---AACCAACAAT---TTT--------------GA-----------------------------------
i caePb3.Scfld02_0      C 0 I 65
s caeJap4.Scaffold17739   42309 211 -   130595 ----------------------ggcaccccagccttcttccaa---aattgtttct----acctggcg------catttttaaaac--cctaaggctcggtcatt----------------------ttc------tgaccaa--aaggcctcgttcttggattaaaatgatggtgccatc--ctgaataa--tcagataa------------------tgattcgaatttctcaaaaa------agaaaattttc-gagtgaaaaaataattt-----cattatccgacga---acttggtgacacattg--------------gacg---------------------------------
i caeJap4.Scaffold17739 I 127 C 0

a score=-25957.000000
s ce10.chrX             4548381 101 + 17718866 AAATTGTGGGTGACCCTTTTTGTATAATACTTATTAGACC----------TGGGATTCGTGTATTTTCAA---GCCTAAAACAAATCAATCCCACGTTTCAATCAAATAATCCT
s cb4.chrX              9843488  74 + 21540570 ATGTTGCGTGGGATC------TAATGTTGCATTGTATTTC----------TTGCATTTTGCTAT------------ATAAACAAAACAA---TATTTTGTaatc--t-------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1478113  38 -  4500979 -------------------------------------ttt----------ttacattt-------------------caGGTAAAGTGA---CAGGTTACAATTAAC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218752  56 +   386604 -----ACAAGGCAAC------ATACAATCCATCGTAAACC------AAAATTAGAATT-----------------------CAAAGTGC---CAAGCTT---------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   42520  87 -   130595 -----acgggggaggcgtgtggTACCATACATATTATTGTCTTTTACTAATAGCATTC--AGATTCTCAATCTACCCGTGAGAAAATGA---TGATT-----------------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2788630  65 +  4147112 I

a score=-23764.000000
s ce10.chrX             4548482 45 + 17718866 GTTAAAGTAAA-----TGAGTGGAAAATTTATTGGA------------------------------------------AAATATTTTTGGGC
s cb4.chrX              9843562 74 + 21540570 ------------------atcagaaaaattttagcaATTCTTGTGAAGCCAGACTGGTCGGATGATGACTGTTATGTATAAATCTGTTGCAC
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1478151 42 -  4500979 ------------------ACCAAGAAAGATGTTGCA--------GAA------------------------ttgtattaaatttttttgagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218808 12 +   386604 ------------------GCCTAAAaatta--------------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788695 20 +  4147112 ----------------GGGAAGAAAAATAGGTAGGA--------------------------------------------------------
i caePb3.Scfld02_0      I 65 C 0
s caeJap4.Scaffold17739   42607 58 -   130595 GTCACAGCAGGAATCCTCGGCGACAAATTGCTTGGA----------------------------------GCTTTTCTTAATGGAGATGAGT
i caeJap4.Scaffold17739 C 0 C 0

a score=-4073.000000
s ce10.chrX             4548527 18 + 17718866 CAGGTAC---------CACAAATTGTA
s cb4.chrX              9843646 13 + 21540570 CA--------------CCCCAAAAATT
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold622   218820 10 +   386604 -----------------actgaaaata
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788715 11 +  4147112 ----------------CATTGAATAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   42665 27 -   130595 CGTGTACTGGTTTGCACATAAATCGGA
i caeJap4.Scaffold17739 C 0 I 264
e caeRem4.Crem_Contig0  1478193  0 -  4500979 C

a score=-21746.000000
s ce10.chrX             4548545 103 + 17718866 GAGTT-----------------------------TAGTTTAAAAGATT-----AACTGGAACTTAGTTTTGTC-------------------------------------------------AAAAATTATAAATGATTTTCACCTGTTG------------------------------------------------TATGGTAAATTAGGA----------TGATTATTGGAAACGAAAAAA
s cb4.chrX              9843659 236 + 21540570 AGTTATTTGCAGATTCGtgatcattttctgaaactaattttaaaaattcaattactCAGACTTtagttattttgaaaatagtaaCCACCGAGCTGTTTTCATCAATGCAATACAACTTTCAGAAGGTTAACCGGTCAATTT-ACCCATTTACTTCATAAAGCGGCCCCCTGTAACTTCACCGGGTAATTTGAAGGGGGGAGAGTACTGTAGGAATCCTTGAAGTGTTAATTAAAAAT-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   218830  62 +   386604 atggg-----------------------------TAACATTAAAGGAT------------------TTGTTTT---------------------------------------------------------TCggcaaattccaaaaatatac-----------------------------------------------------------------------tatttattgaaaac-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788726  54 +  4147112 AAgta-----------------------------caatttgaaacagt------------------ttcttct---------------------------------------------------------------gatttcactcattt-------------------------------------------------------------------------ttttcattcatttt-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   42692 264 -   130595 I
e caeRem4.Crem_Contig0  1478193   0 -  4500979 C

a score=-41277.000000
s ce10.chrX             4548648 137 + 17718866 ATTATTCGTTT--TACACTGTGTGACACAAACTCTAAATTTTTCAAAAAAGTTTT---------------GGATTCAATATTGTGAAGCTTTAATTTCAAACAATTTCCAAA---------------------------------------------------------------------------------GTTGACACATTTTGATCT------------------------------------CCACTTGA--------------------------T---TTAAAATATCGACAA
s cb4.chrX              9843895 279 + 21540570 GTTGCCTAGGT--TCTAATATTGCA-------TCGAATTTCTTGTGTATTGGTTCATAAGCAAAACAACGTTTTGTAATCTATCCAAGAT---ATTTAAAGGggtttttagaagttttgaacCCCAGGCTGGTCGGATGAGGGATGTTATGGCTAAATAGGGTATTGTCACCCCTAACTTTGGTTATTTGGagattcatgaatttttttttctggacacACCTTTCAGAATTCAGTTTCCCACGCTGTTTCTGGAAAACACCACCAAGCTGTTTTTACCTAT---TCAAA------ACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1478193  67 -  4500979 gctATTCACTT--CCcaaggtt----------ttcaattttttatatctCGTTGC--------------------TAAT------------------------GTTTTCATA----------------------------------------------------------------------------------------------------------------------------------------TTCTAAA-----------------------------------------ACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218892  69 +   386604 -ttaTTCATTT-----AATTTG----------ACAGATTATTGATataaatctct------------------------------------------------tttttcaaa---------------------------------------------------------------------------------------------------------------------------------------cttttttg--------------------------tttatcgAA------CCAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788780  71 +  4147112 -tttttcatttttcccaatgCT----------ACCCAAAAAATGCATCAAGTTGT------------------------------------------------TTCTCCAAC---------------------------------------------------------------------------------------------------------------------------------------Ctactgaa--------------------------t---tcaaa------acaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   42692 264 -   130595 I

a score=407490.000000
s ce10.chrX             4548785 792 + 17718866  
s cb4.chrX              9844174 755 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1478260 759 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   218961 748 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2788851 757 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   42956 716 -   130595  
i caeJap4.Scaffold17739 I 264 I 777

a score=-2912.000000
s ce10.chrX             4549577 10 + 17718866 GAGCTCTTTT
s cb4.chrX              9844929  5 + 21540570 CCTTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1479019  5 -  4500979 GAGTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   219709 10 +   386604 GGATTCTTCT
i caeSp111.Scaffold622  C 0 I 105
s caePb3.Scfld02_0      2789608 10 +  4147112 CGGCTCATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   43672 777 -   130595 I

a score=547.000000
s ce10.chrX             4549587 8 + 17718866 GGGTTCTT
s cb4.chrX              9844934 8 + 21540570 AGGCTCTT
i cb4.chrX              C 0 I 95
s caeRem4.Crem_Contig0  1479024 8 -  4500979 TGGCTCTT
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      2789618 7 +  4147112 TGGTGCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   43672 777 -   130595 I
e caeSp111.Scaffold622   219719 105 +   386604 I

a score=-5988.000000
s ce10.chrX             4549595 101 + 17718866 CCTGGTAAG--------------TCTAATAA-ACTGG--TGAGATGACTAG---GAAAACTTATATTTTTTAAGCAGAATCACAGAAGTCACGGAAAGCATTAGTAACGGAACACACCCTC--
s caeRem4.Crem_Contig0  1479037  95 -  4500979 CCCGACAAG-AGCTCCTAAGGTATTTCATAACACATG--CGTGGTCATGAG---------------TCACTTAGAAA------TGAAGTCATGTGTATTTTTAT----AGCTTTTACATTCTA
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2789625 101 +  4147112 ---AACAAACAGCTGATCTAGGATTTCATAATACTGGACTATGGTCCGGAGACCGAAGACCCAAGCTTTTCTAGAAA------GAA---CATATG-ATTTTTAT-------TGTGAACCTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   43672 777 -   130595 I
e cb4.chrX              9844942  95 + 21540570 I
e caeSp111.Scaffold622   219719 105 +   386604 I

a score=-4225.000000
s ce10.chrX             4549696 28 + 17718866 ------AAAAAAGTAAGAGA------------TCATCTTA--AGGAGC-
s cb4.chrX              9845037 29 + 21540570 ------aaatgagaaaaaaa------------acatctga--agTGATC
i cb4.chrX              I 95 C 0
s caeRem4.Crem_Contig0  1479132 38 -  4500979 ------AAAACAGCATAAAATGTTAGAAGACCACATTGGA-----GATC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2789726 34 +  4147112 AAGTTTGAGAATCCATAAAA------------ATATGGAACCAGGG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   43672 777 -   130595 I
e caeSp111.Scaffold622   219719 105 +   386604 I

a score=29968.000000
s ce10.chrX             4549724 266 + 17718866 ----AACCA------ACTCTGCAGGA------------GGAAGAA-AATTCACCTA---ATGCTGTTGAGTAGAGTGGAAGTTATTTCCGGC------GT---CTGTCACGAGCATATTCCCCCTTGATCGTAAAAGTTATG------------AGTTGGCAGT-----------------------GCCATG-TGT------------GGTTGGCGAA------GCTTAAAGCTTTTGTT--CACGTAAACTGA-----------ATTTTTGGGAATCTTGAAAAATCTGAAAAACTTAGAATGAAATTACTAAAAACTACTCAA-----------TGGAGA---------------------TTCCCTGTT-TGTTGTAAAAGCAGACCAATCGAGACA
s cb4.chrX              9845066 356 + 21540570 ACAAATCCAGACGACATTCTGCATGAGTTGAACCAAAGAGAATAA-AATAGAacta---gaatttccaaa---accaaAAGTTATTTCCGGC------ATTCGTCGTCACGAGTG-ATCTCTTGCCGGTCGTAAAAGTTATGATGGTTCTTA--AGTTAtgagttgaaatttttc-atgtgTGAGACGCCATG-TGTCCGAGATTCCTGGAGTGGCCCA------TCCC--AGCTTTCCGT--CACGTAACCTGCCAGCAAACTGGATCTATCGGAGGAGTAGAGGAAGGGAGATGC----AATGACCTCACCAAAAGTTACGCAATCCGATTG---TTTAGAGGTGATGAATCCGAATC----CCCTCTGTC-AAAT----AAGCGAATaaatcgaaac-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1479170 321 -  4500979 AATGGCCCA---GTTATTCTGCAAAATCATAACTTCTCAGAAAAAGAATTCAACTCTTTGCGTTCCTAAG-----TAAAAGATATTTCCGAC------GT---CCGTCACGAGTG-ATCTCTTGCCGATCGTTAAAGTTATGATGGTTCCCC--GCTTATGAGTCAAAGTCT-----TGTGT-----GCCATG-TGTCCAAGGATC--GAAGTGGCGCC------ATTC--AGCTTTCTCT--CACGTATCCCGTCGGAAAAC------------------AGAATATGGGAAATGC----AATGACCCAACCAAAAGTTACGCAATCGGATTG---TCGAGGGAT------TCAGATTT----TCCCCTGTC-AAATAAAGAAACGAATAAATCgcaac-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   219824 314 +   386604 ----AACCA---AATGCTCTgca-------aatcgaaaagaagaa-atctcAA------AAGCTGTG--------TGCAGTTTATTTCCGGA------GC---CCGTCACGAGTG-ATCTCTTGCCGATCGTTAAAGTTATGATAGTTCTCCTTACTTATGAGTTTGAACGCC---ATGTGTCTGA-ATCATGATGT------------AAGTGGCGCC------ATCC--AGCTTTCTCTCCCACGTAACCTGCCGAT-------TTCAATGAGGGAAAGAAACGAAGTGAAACGC----AATGACCCAACCAAAAGTTACGCAAGCGGATTGGGATTCAAA--TCGCTAACCCCAATCCCAATCCCCTGTC-AGAGAAAcaatcgaat-a---------
i caeSp111.Scaffold622  I 105 C 0
s caePb3.Scfld02_0      2789760 323 +  4147112 ----AACCA---GTTATACTGc----------------agaaaaa-atctcaa------gaagAGGAGAG---CCTTCAGGTTATTTCCGGATTCTCCGT---CCGTCACGAGTG-ATCTCTTGCCGGTCGTTAAAGTTATGATGGTTTTTCTTACTTATGACTTTGAACATCTGTTTGAGTTTGa-gtcattttcttcaa-------agagCGGCGCCCGAAGGATCC--AGCTTTCTAT--CACGTAGCCTGCCAA---------------AGGGAAGAACAGGATGTTAAATGC----AATGACCCAACCAAAAGTTATGCAATCGGATTGGGGTTGAGA-CCCATCAATCCTACCCGCAATCCCCTGTCAAGGGAAAGAagcgaacaa---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   43672 777 -   130595 I

a score=294957.000000
s ce10.chrX             4549990 707 + 17718866  
s cb4.chrX              9845422 703 + 21540570  
i cb4.chrX              C 0 I 75
s caeRem4.Crem_Contig0  1479491 642 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 69
s caeSp111.Scaffold622   220138 618 +   386604  
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2790083 630 +  4147112  
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold17739   44449 582 -   130595  
i caeJap4.Scaffold17739 I 777 C 0

a score=-6896.000000
s ce10.chrX             4550697 29 + 17718866 TAGTGCTTATTGCTC--AAATTTGGCT------GTTC
s cb4.chrX              9846200 29 + 21540570 ACATGTTTCTAACTG--TAATATTGCC------GTCT
i cb4.chrX              I 75 I 29
s caeSp111.Scaffold622   220757 12 +   386604 -------------------aCGCAACC------GTCT
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2790749 37 +  4147112 gaaaatttgtagCGGATTAACGGCACCTAAGAAATCT
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold17739   45031 17 -   130595 ------------CAG--CAAATAAGCT------CTTC
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1480133 69 -  4500979 I

a score=-4303.000000
s ce10.chrX             4550726 11 + 17718866 AT-----AACTCGGAT
s caeSp111.Scaffold622   220769 12 +   386604 TTC----CGATTCTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2790786 16 +  4147112 ATCAACGCAATTAGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45048  5 -   130595 ---------ATTAC--
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846229 29 + 21540570 I
e caeRem4.Crem_Contig0  1480133 69 -  4500979 I

a score=-1163.000000
s ce10.chrX             4550737 17 + 17718866 GTATTCAGTTCTAATAC
s caeRem4.Crem_Contig0  1480202 13 -  4500979 ----TTATCCGTTTCAA
i caeRem4.Crem_Contig0  I 69 I 4
s caeSp111.Scaffold622   220781 17 +   386604 CTCTTCAGCAGCTTAAT
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2790802 17 +  4147112 AAATTTAgcttttgaat
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17739   45053 12 -   130595 -----CAGTTTTACTAC
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846229 29 + 21540570 I

a score=-7689.000000
s ce10.chrX             4550754 20 + 17718866 AAATTTGTC----AATTGCAAAAA
s cb4.chrX              9846258 24 + 21540570 aaatttttcttgaaggCGCATGAG
i cb4.chrX              I 29 I 289
s caeRem4.Crem_Contig0  1480219 14 -  4500979 -AATCTCTC---------CAAGTG
i caeRem4.Crem_Contig0  I 4 I 38
s caeSp111.Scaffold622   220800 17 +   386604 CAAGATTTT-------AACATGAC
i caeSp111.Scaffold622  I 2 I 42
s caePb3.Scfld02_0      2790823 17 +  4147112 aaagtcgtc-------aacaaaaa
i caePb3.Scfld02_0      I 4 I 144
s caeJap4.Scaffold17739   45065  4 -   130595 -----------------TCAG---
i caeJap4.Scaffold17739 C 0 C 0

a score=0.000000
s ce10.chrX             4550774 33 + 17718866 TAATGTTTACTTCTTTTTTCTATAGTTTTGATT
e caePb3.Scfld02_0      2790840 144 +  4147112 I
e caeJap4.Scaffold17739   45069  0 -   130595 C
e cb4.chrX              9846282 289 + 21540570 I
e caeSp111.Scaffold622   220817 42 +   386604 I
e caeRem4.Crem_Contig0  1480233 38 -  4500979 I

a score=-3901.000000
s ce10.chrX             4550807 24 + 17718866 GCATATCGATATGTTCAAAATTAA
s caeRem4.Crem_Contig0  1480271 13 -  4500979 ----GATGa----tctaactt---
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622   220859 24 +   386604 gtgaaatgaaatgtCCAGAATAAA
i caeSp111.Scaffold622  I 42 I 113
s caeJap4.Scaffold17739   45069  8 -   130595 --------AAAAGTCA--------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2790840 144 +  4147112 I
e cb4.chrX              9846282 289 + 21540570 I

a score=-1368.000000
s ce10.chrX             4550831 53 + 17718866 CCAGTCTTTCACCAGGAAGCAACATAGGACTAATAGAAAAAATACGGTATATA
s caeJap4.Scaffold17739   45077  6 -   130595 -----------CC------------------------------------TACA
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2790840 144 +  4147112 I
e cb4.chrX              9846282 289 + 21540570 I
e caeSp111.Scaffold622   220883 113 +   386604 I
e caeRem4.Crem_Contig0  1480284  0 -  4500979 C

a score=-1602.000000
s ce10.chrX             4550884 27 + 17718866 GTGGCAGTCTAAACTGATGCTTTATGT
s caeRem4.Crem_Contig0  1480284 20 -  4500979 -------tttgaatcgCTTCTATGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17739   45083 11 -   130595 ---------GTGACTGACTC-------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2790840 144 +  4147112 I
e cb4.chrX              9846282 289 + 21540570 I
e caeSp111.Scaffold622   220883 113 +   386604 I

a score=546.000000
s ce10.chrX             4550911 1 + 17718866 A
s caeRem4.Crem_Contig0  1480304 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 36
s caePb3.Scfld02_0      2790984 1 +  4147112 a
i caePb3.Scfld02_0      I 144 C 0
s caeJap4.Scaffold17739   45094 1 -   130595 A
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846282 289 + 21540570 I
e caeSp111.Scaffold622   220883 113 +   386604 I

a score=-2086.000000
s ce10.chrX             4550912 43 + 17718866 CTTTTAACTTTCATTCTAACTTGGTGATTCTAAAAAAACGACA
s caePb3.Scfld02_0      2790985 21 +  4147112 ttttt--ctttctttttctctt--------------------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45095 14 -   130595 CTTTT--CCCGCATCT---------------------------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846282 289 + 21540570 I
e caeSp111.Scaffold622   220883 113 +   386604 I
e caeRem4.Crem_Contig0  1480305 36 -  4500979 I

a score=1859.000000
s ce10.chrX             4550955 9 + 17718866 GACATAGTT
s caeSp111.Scaffold622   220996 9 +   386604 GACATGCTT
i caeSp111.Scaffold622  I 113 C 0
s caePb3.Scfld02_0      2791006 9 +  4147112 gGCATGCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45109 7 -   130595 --CACAATC
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846282 289 + 21540570 I
e caeRem4.Crem_Contig0  1480305 36 -  4500979 I

a score=3002.000000
s ce10.chrX             4550964 34 + 17718866 GACTCAGTTCCCGTAAAGA-----TC---------TGTCTGATCACCT
s caeRem4.Crem_Contig0  1480341 39 -  4500979 GACTCACTTTTCATCCAAATTATCTC---------TGTCTGATCAGAT
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold622   221005 33 +   386604 GActc-cttttccaaaaaa-----ca---------tgTCTGATCACAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791015 34 +  4147112 GATTCACTTTCCCGAAAAA-----TC---------TGTCTGATCACAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45116 24 -   130595 ----------------AGA-----TCAGATCGTAGTGACCAATCC---
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9846282 289 + 21540570 I

a score=142725.000000
s ce10.chrX             4550998 220 + 17718866 CTCGGCTTGTTTCATT-----CTCGCATCCATATCTGTTCATACCAGCTGATCAGCGGCTGAGAGAGAAAACGAC-GCCACAGGA---GATGTCGCCGACGCAAGGGA----A-GATACCCC--------CGGC--GGCAGCCGGCGGGCACATTGGCTAATTGCGCAACGATCGCAAGGTCGATCACACTTTCCCAATTCCAAATGACCGT-AAAATGCGCCAATCTACTCTGAG----ATGTTGCA----A
s cb4.chrX              9846571 233 + 21540570 CTGTAC---TGATCCCTATCGCTCTTATCT--GTCCGTTCATGCCAGCTGATCAGCTG------GCGGCAACGAAAATCTCGCAACACGACGTCGCCG--GA-CGAGAAAAGA-AAGATTCGAAGAGGTGCGGCA-GGCAGCCGGCGGGCACATTGGCTAATTGCGCAACAATCGCAAGGTCGATCACACTTTTCCAATCCTAAATGACCGTAAAAATGCGCCAACCTAAAGAGGAAACCATGTTGTA----G
i cb4.chrX              I 289 C 0
s caeRem4.Crem_Contig0  1480380 209 -  4500979 ---------CGACCAT-----CTCTTATCC--TCTCATTCATACCAGCTGAT--GGTA------GGGAAAACGACGGCTACAGAA---GATGTCGCCGACGC-CGGGA----A-GAGACCTCAAGAGGTGCGGCA-GCCAGCCGGCGGGCACATTGGCTAATTGCGCAACGATCGCAAGGTCGATCACAC-TTTCCAATCCCAAATGACCGT-AAAATGCGCCAATCTACCCGGAG----ATGTTGCA----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221038 201 +   386604 ---------TGACCAT-----CTCTTATCC--TTCCGTTCATACCAGCTGATCAG---------------ACGAC-GCCGCGGGA---GATGTCGCCGCCGC-CGGGA----A-AAGAACCCAAGAGGTGCGGCA-GCCAGCCGGCGGGCACATCGGCTAATTGCGCAACGATCGCAAGGTCGATCACAC-TTTCCAATCCCAAATGACCGT-AAAATGCGCCAATCTACTCAGAG----ATGTTGCA----A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791049 207 +  4147112 -------------CTT-----TTCTTATCC--TTCCGTTCATACCAGCTGATCAG----------AGAAAACGAC-GCCGCGGGA---GATGTCGCCGCCGC-CGGGA----AGAAGAACCCAAGAGGTGCGGCA-GGCAGCCGGCGGGCACATTGGCTAATTGCGCAACGATCGCAAGGTCGATCACAC-TTTCCAATCCCAAATGACCGT-AAAATGCGCCAATCTACTCAGAA----ATgttgcaattga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45140 191 -   130595 --------ATATGTGT-----CATCTTTCT--TTCCGTTCTTACCAGCTGATCGG---------------AAGAG------AGAA---AACGCGGTTGCCGC-AGAGA----A-GACAGTCG-GGAGGTGCGGTGCGGCAGCCGTTGGGCACGTCGGCTAATTGCGCAACTATCGCAAGGTCGATCACAC-TTTCCAATCCAAAATGACCGT-AAAATGCGCCAG------CGGAG----ATGTTGCA----A
i caeJap4.Scaffold17739 C 0 I 481

a score=3343.000000
s ce10.chrX             4551218 38 + 17718866 AACACAATGGAATG----------AGAGGGGAAAAAAGAGATAAGCTC
s cb4.chrX              9846804 35 + 21540570 AACTAAATGATAAA----------AAC---TACTAAACAGATAAGCTC
i cb4.chrX              C 0 I 502
s caeRem4.Crem_Contig0  1480589 31 -  4500979 AACTAAatggaaaa----------g------acaaaaaagataaGCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221239 45 +   386604 AATGTAGTGGGACAGAAGGAaggttga---aaaaaagaagataagcTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791256 35 +  4147112 aaaatggttagatg----------tga---aaaaagagagataagcTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   45331 481 -   130595 I

a score=2960.000000
s ce10.chrX             4551256 85 + 17718866 TTACCCACCA------GTAGTTAAACTTAATGG--TGTTGTGGTTTGAACATGTAATGACCATTAAAAA----A-----GGTGACGGTATTAG------TGGAGGTCT
s caeRem4.Crem_Contig0  1480620 81 -  4500979 ---CCCTGAA------GTAGTT-TGTTTAATTG--CGTTGGGG-----GA-----ATCATCGTTAATGG--CTAGCAGTATGGGTGGTATCAGTTT---TGAAGGTCT
i caeRem4.Crem_Contig0  C 0 I 232
s caeSp111.Scaffold622   221284 93 +   386604 ------TGAAGTACAGGTACTT-ACTTTAATGG--CGTTGCGGTTTGAGAGTGTGATGATCATTTAAAAC-CTA-----ATGGGTggcatttttttttagaaaggTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791291 86 +  4147112 ------CGAA------GTACTT-AACTTAATGGGTGGTTGTGATTTG-GACAGTAATGATCGTAAAAAATGCTA-----ATGGGTGGTATTGCTGT---AGTAGGTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I

a score=-2125.000000
s ce10.chrX             4551341 26 + 17718866 ACTAA------ATATGTAATGT----------------ATCAAAATGT
s caeSp111.Scaffold622   221377 48 +   386604 GATTTTGCGTCAGAGCGACTGAATGAATAAAACCGGGGAAAGAAAcgt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791377 27 +  4147112 ACTCTT-----AGATTTGTTGA----------------AATAAAATGT
i caePb3.Scfld02_0      C 0 I 350
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I
e caeRem4.Crem_Contig0  1480701 232 -  4500979 I

a score=1377.000000
s ce10.chrX             4551367 38 + 17718866 TTTTCTGTTCTATTCATTTTCAAAAATCATATCCTGCA
s caeSp111.Scaffold622   221425 36 +   386604 ttat-tcttct-tttattttcaaaattcatacccttca
i caeSp111.Scaffold622  C 0 I 98
e caePb3.Scfld02_0      2791404 350 +  4147112 I
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I
e caeRem4.Crem_Contig0  1480701 232 -  4500979 I

a score=0.000000
s ce10.chrX             4551405 589 + 17718866  
e caePb3.Scfld02_0      2791404 350 +  4147112 I
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I
e caeSp111.Scaffold622   221461  98 +   386604 I
e caeRem4.Crem_Contig0  1480701 232 -  4500979 I

a score=1059.000000
s ce10.chrX             4551994 44 + 17718866 aaattttattatgatatgtggtcattttaa-caccttataaaaat
s caeRem4.Crem_Contig0  1480933 45 -  4500979 AGATTTCAATGTGATTCGTTGTCTCTTCAGTCAATTGAGAGAAAT
i caeRem4.Crem_Contig0  I 232 C 0
e caePb3.Scfld02_0      2791404 350 +  4147112 I
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I
e caeSp111.Scaffold622   221461 98 +   386604 I

a score=-1254.000000
s ce10.chrX             4552038 51 + 17718866 --tttta--------atcatttccccaccagcTGTACCCACACTCTCCAATTTTCACTTCA
s caeRem4.Crem_Contig0  1480978 45 -  4500979 GGTTTGAATCCAGTCAGTTTTCCATC--------TATTC-TTC-CTccgattttt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221559 46 +   386604 --tttaa--------agtttttcataACCAATTGTATCCATGC-ATTCAGTTTTCAA----
i caeSp111.Scaffold622  I 98 I 2
e caePb3.Scfld02_0      2791404 350 +  4147112 I
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I

a score=5101.000000
s ce10.chrX             4552089 119 + 17718866 TATTCAAAACCGTATTCAAAAGTATTCAAAAAATTCAACCCACATCGCCAGGTGTGTTCAAATTTT-AACATT--CGTTGTTCTCCAACCCCTACAGCCACCAGAC------TATGCGCGAACTGTTC------
s caeRem4.Crem_Contig0  1481023 107 -  4500979 tatttgaa----------------aaaataccaaCCCACCTACATCGACAggcgttttcaacttttcaacagT--CGACGGTCTTCCATCTCGACAACTACCAGGT------TGTGTGTGAAAAAATGTTC---
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold622   221607 111 +   386604 TGTTCCAATTTGC-----------GACAAAAAACCCAACCCACATTGAcagtcattttcaattttcgaacaGTTGCCTCGGTTCCCAACCT------CAACTAGAC------CGCAAAGAGAAGAGACTTCGTT
i caeSp111.Scaffold622  I 2 I 6
s caePb3.Scfld02_0      2791754 124 +  4147112 TGtccgaattttcattcaaaaa-agaaaaaaaaaccaacccaCACCGTCAGgcgttttcaacatttcaacaGT---CTCGGTCCTATTCCC------CCAATAGGTTTTAGGTGGAAGAAGAACACTCTCAACC
i caePb3.Scfld02_0      I 350 I 6
e caeJap4.Scaffold17739   45331 481 -   130595 I
e cb4.chrX              9846839 502 + 21540570 I

a score=15974.000000
s ce10.chrX             4552208 50 + 17718866 GAATACGACAATTATTTTTTCACTTTGCTAC------------AAAAT---GTCCAAAGGTGCCC-
s cb4.chrX              9847341 59 + 21540570 GAAGAGaacaattatttcg--attttacTCCTCcgacaaaataaaaaa--cgttc--AGGTGCCC-
i cb4.chrX              I 502 C 0
s caeRem4.Crem_Contig0  1481155 46 -  4500979 GAACACACCAATTATTTTG--ACTTtgctac------------aaaaa--tgttc--aggTG-CC-
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold622   221724 39 +   386604 ------AACGATTATTTTG--ACTTTGCTAC------------AAAAG---GTTC--AGTTG-AC-
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2791884 38 +  4147112 GAACACGACAATTATTTCG--ACTTTGCTAC------------AAAGG------------TG-CC-
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17739   45812 51 -   130595 GAGGAGGGCAATTATTGCG--ACTTTGCTAC------------AACAAAATGTTCGGAGGTG-CCC
i caeJap4.Scaffold17739 I 481 I 23

a score=-4787.000000
s ce10.chrX             4552258 13 + 17718866 CCATCTTGC---TTGG-------------
s cb4.chrX              9847400 12 + 21540570 TCTTCTCAA----AAG-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1481201 16 -  4500979 TCACCTCAGTCTCAAG-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221763 11 +   386604 CCTCCTCAA-----AG-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791922 24 +  4147112 CCTTTTCTG-----CGTTTGGTTTTGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   45863 23 -   130595 I

a score=53445.000000
s ce10.chrX             4552271 145 + 17718866 G--GTTTCAA-------TCTCGATTGGGG-------CCGCCCCTGTAAGACTCTTCCCTTTTT-------CTATCTCGCAGTTCTTACGTAACCGCCTT--------GCA--TTTCGTCGCGCCTGCCCTGTCCGCAAAAACGATTAGAACGATTAGCTTGCCG-TTTGACCTAAAAAA
s cb4.chrX              9847412 126 + 21540570 ACGGTTTCGGTAAATGTTCCAAGTCTGTCCGGAAACTTACCC--------------TCATTTT---TCAACC---------TTCTTACGTAACCGCCT----------CC--TCCCATTTCGATCGC--------------CGATTTAAACGATTAGCTTGGCG-TTTGACCTAAAAAA
i cb4.chrX              C 0 I 258
s caeRem4.Crem_Contig0  1481217 149 -  4500979 A--ATTTCGG-------TTTGAGAGTGTC--GAGACTTAGCCCT----TCTTCGTAttttttt---ttACCTATTTCGCAGTACTTACGTAACCGCTTT--------GCA--TTTCAATTCGTCTGCCCTGTCCGC-AAAACGATTAAAACGATTAGCTTGCCG-TTTGACCTaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221774 134 +   386604 G--GGTTCAG--------------TTGTG---------ACCCAT----GATTCCTATTTT------CTGACTACTTTGCAGTACTTACGTAACCGCCTC--------GCATTTTTCGTCGCGTCTGCCCTGTCCGC-AGAACGATTAAAACGATTAGCTTGCCG-TTTGACCTaaaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2791946 145 +  4147112 G--GTTTCAA-------TCTCGATTCGTG---------ACCCAT----gcctcatctttttttcacctACCTATTTCGCAGTACTTACGTAACCGCCTT--------GCA--TTTCATCGCGTCTGCCCTGTCCGC-AAAACGATTAAAACGATTAGCTTGGCG-TTTGACCTaaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   45886 131 -   130595 --AGTTTCTA-------TCTCGATAGGTG---------TCCCCT------------------C---TCGCCC--------GTACTTACGTAACCGCCTTTGTCGCCGTCAGTCTCTGTCCTGTCCGTCC-GTCCGCAAAAACGATTAGAACGATTAGCTTGCCGTTTTGACCTAAAAAG
i caeJap4.Scaffold17739 I 23 C 0

a score=15555.000000
s ce10.chrX             4552416 55 + 17718866 AAATCATTCAAGTAGCTGCT---GGCTCGTCG-TTCCTTCTCGTCATTACGTAACTTTT----
s caeRem4.Crem_Contig0  1481366 50 -  4500979 -aaGCATCAC---AGCTACCGGCGGCTCGTCG-TTCGTTCTCGTCATTACGTAAC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   221908 49 +   386604 --aGCATCACAGTGGCTACTGAAGGCTCG----TTCATTCTCGTCATTACGTAAT--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2792091 53 +  4147112 --aGCATCATTGTAGCTGTGGGCGGCTCGTCGTTCCGTTCTCGTCATTACGTAAT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   46017 54 -   130595 ----CATCTTGGTAGCTG-TGGCGGCTCGTCGTTCCCCTTTCTTCATTACGTAAT----TGTT
i caeJap4.Scaffold17739 C 0 I 276
e cb4.chrX              9847538 258 + 21540570 I

a score=-42451.000000
s ce10.chrX             4552471 529 + 17718866  
s caeRem4.Crem_Contig0  1481416 284 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   221957 261 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2792144 282 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   46071 276 -   130595 I
e cb4.chrX              9847538 258 + 21540570 I

a score=1357.000000
s ce10.chrX             4553000 11 + 17718866 -TTTCCATTTCC
s cb4.chrX              9847796 12 + 21540570 TCCCCTCCTCTc
i cb4.chrX              I 258 C 0
s caeRem4.Crem_Contig0  1481706 12 -  4500979 CCTCCCTCACTC
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   222218 11 +   386604 -ttttcttctcc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2792426 11 +  4147112 -cctccttgctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   46071 276 -   130595 I

a score=416525.000000
s ce10.chrX             4553011  972 + 17718866  
s cb4.chrX              9847808 1142 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1481718  990 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   222229  978 +   386604  
i caeSp111.Scaffold622  C 0 I 27
s caePb3.Scfld02_0      2792437  956 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   46347 1127 -   130595  
i caeJap4.Scaffold17739 I 276 C 0

a score=381.000000
s ce10.chrX             4553983 30 + 17718866 AATCAACTCGCAATTGCTAGCCAAAATTGT
s cb4.chrX              9848950 25 + 21540570 AATGCACT-----TTTCTAGCTCTAATGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1482708 30 -  4500979 AATCAACTTGCACTTGCTAGCCGAAATCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2793393 19 +  4147112 aatcCTTT--CACTCTCAGGA---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   47474 25 -   130595 AACCAATCTGCACTCGCTAG-----ATTGT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   223207 27 +   386604 I

a score=492869.000000
s ce10.chrX             4554013 2141 + 17718866  
s cb4.chrX              9848975 1770 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1482738 1785 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   223234 1733 +   386604  
i caeSp111.Scaffold622  I 27 C 0
s caePb3.Scfld02_0      2793412 1780 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   47499 1794 -   130595  
i caeJap4.Scaffold17739 C 0 I 16

a score=3444.000000
s ce10.chrX             4556154 19 + 17718866 CTTGG-AATG-----G-------AAGGTAGGA
s cb4.chrX              9850745 32 + 21540570 CTTGGAAATGAAAGAATGAGCGGGAAGGGGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1484523 24 -  4500979 CTCGG-ACTGAAGGAA-------GAAAAGGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   224967 19 +   386604 cttgg-aATG-----A-------AGGAGGAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2795192 21 +  4147112 cttgg-aatg---gaa-------aaaagagga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   49293 16 -   130595 I

a score=188613.000000
s ce10.chrX             4556173 287 + 17718866 TGAACCTCCAAGGTCAGTCATTTGATGACCA-TCCATCAGCTAATTGTTGGCACGCCACTGTCGCTAAGTGAGCTT-GAGAG-----CGAAGAATAGGGC-----CAGCGCGCGGGCAAAGTAAAAAAAAAACCACCGATTGTCTTCT----TT-----------------------------------CCCCATCTTCCGCAAC--------------AAAAATTGCAACCTC---TTCTTTTTCTA-------CCACCTTTC----------------CAACATTAC----AATTTATTGGTTGTTCACTCGCCGTCAATCATTTGTTACGGTTCGCTGAGCATGGGGGTCGTTCAAGAAACTTTCGGC-----CAAAGCACCCA
s cb4.chrX              9850777 278 + 21540570 TGAACCTCCAAGGTCAGTCATTTAATGACCA-TCCGTCAGCTAATTGTTGGCACGACACTATCGCTAAGTGAGCTT-GAGTG------------TTg----------gccgaa--------------aaaaa--accaattgtcTCCAACTTCTTCG------------------CAA-----------CCACTTCGTCCGCAacc------ttccgaaaaaaattgcaacctc---tattttt-----------tcttctcttttcaacAACCCAGCCCCATCCTCAC----AATTGATTGGTTGTTCG-----CGTCAATCATTTCTTACGGTTCGACGAGCATGAGGGTCGTTCAAGAAACTT----------CATCGCAACA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1484547 288 -  4500979 TGAACCTCCAAGGTCAGTCATTTGATGACCA-TCCATCAGCTAATTGTTGGCACGACACAGTCGCTAAGTGAGCTt-gagtgagagaaaaagaattgcGC-----GTGCGCAC--------------AAAAA--ACCGATTGTCTTCA----CTTCG--------------------------------CCACTTCTTCCGCAACAACATCGTGTCCCCAAAAATTGCATCTTC---TACTCTC-----------CCACTTTTT----------------CAACCTCAC----AATTGATTGGTTGTTCACTCGTCGTCAATCATGTCTTACGGTTCGATGAGCATGAGGGTCGTTCAAGAAACTTTCGGC-----CAAAGCAACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   224986 288 +   386604 TGAACCTCCAAGGTCAGTCATTTGATGACCA-TCCATCAGCTAATTGTTGGCACGCCACTGTCGCTAAGTGAGCTT-GAGAG-----CGAAGAATAGCGC-----GTGCGTAC--------------AAAAA--ACCGATTGTCTCCA----C-------------------------------------CACTTCTTCCGCAACAACGTCGTCCCCGAAAAAATTGCAACCCC---CCTCTTCTTCA--CTTCACCACCTTTT----------------CAACCTGCC----AATTGATTGGTTGTTCACTCGGCGTCAATCATTTGTTACGGTTCGTCGAGCATGAGGGTCGTTCAAGAAACTTTCGAC-----CAAAGCAACAA
i caeSp111.Scaffold622  C 0 I 51
s caePb3.Scfld02_0      2795213 284 +  4147112 tgaaCCTCCAAGGTCAGTCATTTGATGACCA-TCCATCAGCTAATTGTTGGCACGCCA------CTAAGTGAGCTT-GAGAG-----CGAAGAATAGCGC-----GTGCGTCC-------------aaaaaa--aCCGATTGTCTTCa----cttct--------------------------------tcacttcttccGCAACAACGTCGTCCCC--AAAAATTGCAATTCT---TTTCTGCCTC--------CCACCTTTT----------------CCACCTCCCCCCAAATTGATTGGTTGTTCACTCGGCGTCAATCATTTGTTACGGTTCGTCGAGCATGAGGGTCGTTCAAGAAACTTTCCAC-----CAAAGCAACAA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17739   49309 338 -   130595 TGAACTCCCAAGGCCAGTCATTTGATGACCATTCCATCAGCTAATTATTGGCACATCA---TCGCTAAATGAGCTTAGAGAG-----CGAAGAATAAGGCGAACTGTGCGCGC---------GTCGCAAAAA--ACCGATTGTCTACT----CTCTACTTCTACCTTTTTACCTTCAATTTCCTCCATTTTCCTTCCTCCgcaaca------taaca--aaaacttgcaACCTCGCTCATTTTCTCCattctttgcttcttttt-------------tcctcaccTATC----CAGTGATTGGTCGTTCACTCGTCGTCAATCATTTGGTACGGTTCATCGAGCATGAGGGTCGTTTAAGAAACTTACGACACTTTCTCACCACTC-
i caeJap4.Scaffold17739 I 16 C 0

a score=-527.000000
s ce10.chrX             4556460 15 + 17718866 GCTTTTTTCACACCT-------
s cb4.chrX              9851055 13 + 21540570 --ATTGTgtccacat-------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1484835 13 -  4500979 --ACTATGGACactt-------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0      2795505 15 +  4147112 ACTTTTTTGTCACTT-------
i caePb3.Scfld02_0      I 8 I 32
s caeJap4.Scaffold17739   49647 20 -   130595 --TCTTCTCTCACTCATCCTCT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   225274 51 +   386604 I

a score=-4769.000000
s ce10.chrX             4556475  6 + 17718866 TA--------------------------------------CTTC-
s cb4.chrX              9851070  6 + 21540570 tt--------------------------------------tttc-
i cb4.chrX              I 2 I 14
s caeRem4.Crem_Contig0  1484850 44 -  4500979 ttgtcacttttggCAATCTCGGGTTGATTTAACACTAAGCCTTC-
i caeRem4.Crem_Contig0  I 2 C 0
s caeJap4.Scaffold17739   49667  6 -   130595 ---------------------------------------CCCTCC
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2795520 32 +  4147112 I
e caeSp111.Scaffold622   225274 51 +   386604 I

a score=1058.000000
s ce10.chrX             4556481 10 + 17718866 ACCGCTCGCC
s caeRem4.Crem_Contig0  1484894 10 -  4500979 CTCGCCTGCC
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold17739   49673 10 -   130595 GATGCTTGCC
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2795520 32 +  4147112 I
e cb4.chrX              9851076 14 + 21540570 I
e caeSp111.Scaffold622   225274 51 +   386604 I

a score=-331.000000
s ce10.chrX             4556491 1 + 17718866 T
s cb4.chrX              9851090 1 + 21540570 g
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0  1484911 1 -  4500979 A
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold17739   49683 1 -   130595 A
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2795520 32 +  4147112 I
e caeSp111.Scaffold622   225274 51 +   386604 I

a score=205824.000000
s ce10.chrX             4556492 441 + 17718866  
s cb4.chrX              9851091 500 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1484912 445 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   225325 455 +   386604  
i caeSp111.Scaffold622  I 51 I 19
s caePb3.Scfld02_0      2795552 473 +  4147112  
i caePb3.Scfld02_0      I 32 I 2
s caeJap4.Scaffold17739   49684 459 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-2237.000000
s ce10.chrX             4556933 17 + 17718866 CGACAAATATTTAGATC
s cb4.chrX              9851592 10 + 21540570 CGGGGgataa-------
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0  1485358 17 -  4500979 CGGCGAAAAAGGGGAGG
i caeRem4.Crem_Contig0  I 1 I 4
s caePb3.Scfld02_0      2796027 10 +  4147112 CGGCAAAACA-------
i caePb3.Scfld02_0      I 2 I 5
s caeJap4.Scaffold17739   50143 17 -   130595 CGGCGTCGAGTTGAATT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   225780 19 +   386604 I

a score=664259.000000
s ce10.chrX             4556950 1100 + 17718866  
s cb4.chrX              9851603 1043 + 21540570  
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0  1485379 1074 -  4500979  
i caeRem4.Crem_Contig0  I 4 I 66
s caeSp111.Scaffold622   225799 1068 +   386604  
i caeSp111.Scaffold622  I 19 C 0
s caePb3.Scfld02_0      2796042 1064 +  4147112  
i caePb3.Scfld02_0      I 5 I 52
s caeJap4.Scaffold17739   50160 1104 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=91.000000
s ce10.chrX             4558050 1 + 17718866 T
s caeJap4.Scaffold17739   51264 1 -   130595 T
i caeJap4.Scaffold17739 C 0 I 40
e caePb3.Scfld02_0      2797106 52 +  4147112 I
e cb4.chrX              9852646 1 + 21540570 I
e caeSp111.Scaffold622   226867 0 +   386604 C
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=-65.000000
s ce10.chrX             4558051 53 + 17718866 AGGAAGTTGT--CTTAAATGGTTTTGAAT------TATAATTTaaaatatgaaaaaaaaaa
s cb4.chrX              9852647 54 + 21540570 -------TGTAACATCAATGTTTCTGATTTGATCCGCTAATAGAgcatctgcaaaaaataa
i cb4.chrX              I 1 I 9
s caeSp111.Scaffold622   226867 37 +   386604 ---AAGTTGTAACATCAATGCTTCTGACT----------------AACCAGGAAGA-----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2797106 52 +  4147112 I
e caeJap4.Scaffold17739   51265 40 -   130595 I
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=-253.000000
s ce10.chrX             4558104 27 + 17718866 ataaaaaaccatccattttgcgagcgc
s caeSp111.Scaffold622   226904  6 +   386604 ---------------------GAGCTC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2797106 52 +  4147112 I
e caeJap4.Scaffold17739   51265 40 -   130595 I
e cb4.chrX              9852701  9 + 21540570 I
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=0.000000
s ce10.chrX             4558131 337 + 17718866 tatgtgaagagaatctgggaattaggtacagtacttctggtgatatgattagtctttaggttaagtttgataatccagtcatggactgctccactttcaagttcacgctaggtTTCAGCTGGTTAAAATCTCAGGGTCCTATAGCAAAACGGGTGCTTTCAATTGTGATGATAAATTTATGAAAACGGATTCGAGGTTTTTTGACACACTCGATTCCAAATATCACAAAAAATTTTCCTGAAGAATTGTATGTATTCCAATGCTTCACAAATTTAGGGGTGTCCTACAAGAAGCGCGCGCACTGTAAAaactcgtgacctgtagttcttcagcggcc
e caePb3.Scfld02_0      2797106  52 +  4147112 I
e caeJap4.Scaffold17739   51265  40 -   130595 I
e cb4.chrX              9852701   9 + 21540570 I
e caeSp111.Scaffold622   226910   0 +   386604 C
e caeRem4.Crem_Contig0  1486453  66 -  4500979 I

a score=552.000000
s ce10.chrX             4558468 33 + 17718866 accactaccgactgagttatcccccACCCACTG
s caePb3.Scfld02_0      2797158 33 +  4147112 ACTAACACAATCTAAGTTGTGACTAACTCAATT
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold17739   51265 40 -   130595 I
e cb4.chrX              9852701  9 + 21540570 I
e caeSp111.Scaffold622   226910  0 +   386604 C
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=-1660.000000
s ce10.chrX             4558501 29 + 17718866 ATATTTTTAATAATTTACATAAGTTT--------ATG
s caeSp111.Scaffold622   226910 34 +   386604 ATATGTCTAATGAATC---TAAATTGGTGacttactc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2797191 16 +  4147112 ---------ACAATTC---TGACCT---------TTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   51265 40 -   130595 I
e cb4.chrX              9852701  9 + 21540570 I
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=461.000000
s ce10.chrX             4558530 3 + 17718866 ATG
s cb4.chrX              9852710 3 + 21540570 atg
i cb4.chrX              I 9 C 0
s caeSp111.Scaffold622   226944 3 +   386604 att
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2797207 3 +  4147112 ACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   51265 40 -   130595 I
e caeRem4.Crem_Contig0  1486453 66 -  4500979 I

a score=202967.000000
s ce10.chrX             4558533 364 + 17718866 TTTCAGGTAGCCAGAGGGAAGCTTGTTGCAGTTGAGGACAAATGTCGTGCCTATGAAAAGACCATTAGAGAGTTGCAAGTTCAAGTGGATTTCCTCCGCAAAATTCAACCGAATCCGATGCCACCCGTGATGCTGCCTCCTCCGATGATGCCTATGCCATCTCCAGGGCCGAACAATCTATTTCAAAATCCTGCGATGAGAATGTTGTTGAACAATTTGATTCACATGAACCGTCCCTCAGTGGTTCCCTAGATCCAAACGATTTC---------------AATTTC----TTTATTTCCGATTTTGATGGTGTCATCAAATCTAGTT---GAACC-ACGTAGTCATTTTCATTCCTTGTTTCT---------------------AATCAG-CATTTTGAGCCATTGAA
s cb4.chrX              9852713 385 + 21540570 tttcaggTCGCCCGGGGAAAGCTTGTAGCCGTCGAGGATAAATGTCGTGCTTACGAAAAAACCATCAGAGATTTGCAAATCCAAATCGACATTTTCCGCAAATTCCAAGCAGGTCCGATGCCTCCGGTTATGCTTCCCTCCCCAATGATGCCTATCCCGCCTCCTGGAGCCAACAGTTTCCTCCAAAATCCTGCGATGAGAATGTTGCTGAACAATCTTGTCCATATGAATCGCCCGCCAATGATCCCATAAATCATACT-CATCCGTTATCTTGATACCAAAACCC----TTCAGTCCTGTTC---------------AGTCTAGTG---ATACCAATGTAGTCATTtttctccccc-cccccccccaannnnnnnnnnCCCAAAATCAATCCCTTCGAACTACCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1486519 358 -  4500979 TTTCAGGTGGCTAGAGGAAAACTGGTTGCAGTCGAGGACAAATGTCGTGCTTATGAGAAGACTATCAGAGATCTGCAGGTCCAACTTGAGATTGTTCGAAAGTTTCAATCGAACCCGATGCCACCTGTCATGCTGCCTCCTCCAATGATGCCCATCCCACCCCCAGGACCcaataattttcttcaaaatcctGCAATGAGGATGTTATTGAACAACTTGGTCCATATGAACCGCCCTCAAATAATTCCATAAATC------CCTCC------------CCGAGACCCCACATCCAGTTCATTTCTT-------TCATCGAGTCTAGTG---ATACC-ATGtagtcattttctttttta-attct---------------------aaTCAATCTTCCCGAACCACCAAA
i caeRem4.Crem_Contig0  I 66 C 0
s caeSp111.Scaffold622   226947 357 +   386604 tttcaggtgGCACGAGGGAAATTGGTTGCGGTAGAAGACAAATGTCGTGCGTATGAGAAAACAATCAGAGATCTTCAAATTCAACTTGAACTATTCCGGAAGTTCCCTACGGGTCCAATGCCTCCAGTGATGCTTCCACCACCAATGATGCCCATTCCACAGCCGGGACCGAACAACTTCCTCCAGAATCCTGCAATGAGACTCTTGTTGAACAATTTGGTCCATATGAATCGGCCTCCAATGGCCCCATAAATCATATTACCTCT------------TCACATCCC---ATCCAGTTCCAATCTT-------TCATTGAATCTAGTG---ATACC-ACATAGTCATTTCCTTGTG-----TCT---------------------AATCAATCTTGTCGAACCATCGAA
i caeSp111.Scaffold622  C 0 I 42
s caePb3.Scfld02_0      2797210 353 +  4147112 TTCCAGGTGGCCAGAGGAAAACTCGTAGCCGTAGAAGATAAATGTCGTGCGTATGAAAAAACGATCAGAGATCTCCAAATTCAGATCGATCTGTACCGGAAGTTTCAAGCAAATCCGATGACACCAGTGATGCTTCCACCTCCAATGATGCCACTTCCACCTCCAGGACCCAACAGCTTCCTTCAGACTCCTGCGATGAGAATGATCCTCAACAATTTAGTTCATATGAATCGCCCAACAATCGCTCCATAAATCCCACCAAATTC------------T------CC---ATCCTTTTCCCCTCTC-------TCATTGAATCTAGTA---ATACT-TAATAGTCATTTTCTGTCA---Actct---------------------aatcaaatttttcgatccGTCGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   51305 349 -   130595 TTCCAGGTTGTCAGAGGAAAATTGGCAGCAGTTGAAGAAAAATGTCGCTCATACGAAAAGCAGATTCGAGAAATGCAAGTTCAATTGGACTTTGTTCGAAAACTCCCCGGCAATCCAATGAATCCAGTAATGCTTCCACCTCCAATGATGCCATTACCGTCCACAGGAGCCGCCAACTTTCTTCAAAATCCTGCCATGCGCCTTCTCCTAAACAATCTCGTTCATATGAACCGCCCGCCCATGATCCCATAAATTGTTATGATTCC-------------------TC---ATCGA--TCCAATCTC-------TCATTGATTCTAGTGCATATAAC-AAGTAgtcatacatttttttt-gccgc---------------------aatAA------TGGTTTCattgta
i caeJap4.Scaffold17739 I 40 C 0

a score=-6101.000000
s ce10.chrX             4558897 22 + 17718866 ATAC-AACAATCCTTTGAGCAAT
s cb4.chrX              9853098 23 + 21540570 AATCAAGTGAGCTCTCTACCCAA
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0  1486877 22 -  4500979 AATC-AGTGATCCTTTTCATTCT
i caeRem4.Crem_Contig0  C 0 I 30
s caePb3.Scfld02_0      2797563 22 +  4147112 CATC-ATTGAATCCATTACCCTG
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17739   51654  1 -   130595 ---------a-------------
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   227304 42 +   386604 I

a score=55063.000000
s ce10.chrX             4558919 408 + 17718866 TTCCGAAATACTCTGAAT-CAAAGAACCAACAGCTTTTA------------AAGCGGTTTTG---GTTGGCT-TTTAAAC---TAATTGTCGTTTATATCTTTGTACATAATGCCTATT-CTCGTAGCTACTTCTTATCTTTGCATCCAAATATTTCAAACTTCCAAAAAAAATCAGAGTGCTCTCA---TTCCTGACAATTGT--------ATTTACCGCAATCTTAGAAACTGGTGGACATTTT--CCAAACA-----------ATCCGAATCTACTTTACTT-TTT--TGTTGCAATAGCTT-CAATAA-------AACGTAGCCTTAAA-----TGCACTCA---GCGATTTACCTAGAACGTCCTTTACATTACTT--CATTGTTCTAAATGTTTCCTTTTTTATTTCTTCTGGTCCTTT-----TCTTGACTTTTATAGCATTACCCTTTTTT--CCCGC-----CTTGACTTTTTCCTT--------------------
s cb4.chrX              9853148 405 + 21540570 aatccAAAG---CCGATCAAAACCTACAGACGATTTTCTTTTCCCCTTTTCGAGCGTGTTAC----CCAGCT-TTTCATGA--TAATCTT-GCAAACATCCTTGTACATAATTCTTCCTGCTTGTAATTTAATATCCGCTTAATA-------ATTTTAag-------------------tgcttcttctttttatgaCAT-TGT------TTATTTACTGCAATCTTAGAAACTGGTGGAcaaccc--aaaaaaa-------tcgacCCTGAATCTACTTTACTTGTCG--TGTTGCAATAGCtt-caatataaaaaaaaacgtagCCTTAAAAACCCAACACTCAATTGCAATTGATCCTAGAAGTCTTTATTGTGACTCCGCA----TTTaacttttcgtttctt--------------ttttgaaactcattATTTCCACCCT-----GACGTCAT--TTCACTATTTTCTAATGttgccttc--------------------
i cb4.chrX              I 27 I 2777
s caeRem4.Crem_Contig0  1486929 363 -  4500979 CACCAATAT---CCGTTC-CAACCTACAGACATTTTCCTT-----------AAGCGGTTTAC----TCAGC--TTTCAAGA--TAATCCTAACATCAATCCCTGTACATAATCTGTTC--CTTGtagtttatcatt-----------------tttcaaa-------------------tg---------tttaacATAA-TGTGACGAACTGTTTACTGCAATCTTAGAAACTGGTGGACACCTT--CCAAAAA------------CCTGAATCaactttactt-ttt--tgttgcaataGCTT-CAATAT-------AACGTAGCCTTAA------TGCACTCA---GCAATTCAACTAGAACGTCCTCTTTGCAACTCC-CATTGTTTCAACTCATAGtttttttCCC-------GACTTTTTATATTAATTCTTTCCGCTTC-----CTCTCCATCATCCAC-----CTTGACGTCACTTTA--------------------
i caeRem4.Crem_Contig0  I 30 I 7
s caeSp111.Scaffold622   227346 351 +   386604 TACCAAAAA---CCGATT-AAACCCACAGACATTTCCCA------------AAGCGGTTTAC---TTCTGAT-GTTAAGTA--AAAT-TCATATTACATCCGTGTACATAAT--------CTTGTAGTT-----TTTCCTTCCCC-------CTTTGAAA--------------------ACTTCGC---ATTTTGACAA-CGT--------ACTTACTGCAATCTTAGAAACTGGTGGAACTCTT-------------------CCCTCGAATCtactttactt-ttttctgttgcaATAGCTT-CTATAT-------AAGGTAGCCTTAAA-----TGCACTCA---GCAATTCACCTAGAACGTCCTTTATGCATCATC-CATTGtttcaactctctatttttctcccccc--aggactttt-----attttatttttcctc---------ttttt--tccac-----ctTGACGTCACCCTG--------------------
i caeSp111.Scaffold622  I 42 C 0
s caePb3.Scfld02_0      2797604 354 +  4147112 TACCCAAAAA-TCCGTTC-AACCCTATAGACATTTTGCA------------AAGcggtttactgtttcagct-tTTAAATT--CAATCTTACTTCCCATCCGTGTACATAAT--------C-CGTAGTTT--TATTTCCTTCata-------ctttt-----------------------gctt-------ttttgacaA-CGT--------ATTTACTGCAATCCTAGAAACTGGTGgacaaatt--ccaaaaa---------accccTGAATCTACTTTACTT-TTG--TGTTGCAATAGCTT-CAACCT-------AACGTAGCCTTAAA-----TGCACTCA---GCAATTCAATTAGAACATCCTCAATGCACCTCC-CATTGTTTCCACTCATTATTTCTCCCCTCCC----GActtta-----taataatttttactct------ttttttt--tccac-----cttGACGTCA-------------------------
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17739   51655 366 -   130595 ------------------------aattaaaaatccgct------------ttgcttttttt----tttgctgcttaAATACTTAAT---------AATGCGTGTACATATatttcatt-ctcat---------tctcattttca-------ttttcatt-------------------ttcccacc---attttGACAA-TGT--------CCTTACCGCAATTTTAGAAACAGGTAGACATGttttccaaaaagaaaaaatcaatgttttacatactttaatt-ttt--tgttgcaatagCTTCCGACAC-------AACCTAGCCTTAAA-----TGCACTCA---GCAACTCACCTAGAACGTCTAATATGCAGTCCA-GA------GCACCTATTGTTCTCCTCCtcgt-------tttt-----tcttcctttttatttcattacattttttg--ggcac----tattgacgtcacttcttcttcttctttttttttctt
i caeJap4.Scaffold17739 C 0 C 0

a score=11071.000000
s ce10.chrX             4559327 37 + 17718866 CCCTCAATGATTTC-----ATTTCATTATATTTGTGATAAAT
s caeRem4.Crem_Contig0  1487299 30 -  4500979 ------ATGTtgtc-----tttgcact-tttttgtgataaat
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622   227697 35 +   386604 CTTTTGATGTTGTC-----TTTGCACT-TTTTG-TGATAATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2797958 34 +  4147112 --TTCGATGTTgtc-----tttgctct-ttttgatgataaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   52021 40 -   130595 -ctttcatgTTGCCTTATATTTGCACT-TTATTGTGataaat
i caeJap4.Scaffold17739 C 0 I 1870
e cb4.chrX              9853553 2777 + 21540570 I

a score=-3947.000000
s ce10.chrX             4559364 36 + 17718866 AATTTT-------CAAAGTTCAAAATG-CAGGAAGTAATAAGCC
s caeRem4.Crem_Contig0  1487329 23 -  4500979 ATTTTC----TGCCGATCTACAAATTC-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   227732 27 +   386604 ACTTTTCCTCTAATGAAGCGATaaact-----------------
i caeSp111.Scaffold622  C 0 I 41
s caePb3.Scfld02_0      2797992 38 +  4147112 actttt----tgaaaaagttcaaaaatacagagaaTAATAAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I

a score=-1961.000000
s ce10.chrX             4559400 37 + 17718866 ATACAAAAAACTAGCAAAAACGAAACTCTCACAAGAT------------
s caeRem4.Crem_Contig0  1487352 40 -  4500979 AGAGAAGAGCctaataaaa---------acaaagaaatcatTTCCACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2798030 15 +  4147112 -------------ATAAAT---------TCACAAGac------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeSp111.Scaffold622   227759 41 +   386604 I

a score=15727.000000
s ce10.chrX             4559437 165 + 17718866 ---GATGTTATCCT-CGCATAAAACATCATT---TTGTTTGAATGCAAAACTGAACCCGTTTCAGAGGGTAATGTGCTTTCAGGTGAAGCGATGT-GAAAATTCATTTTTACCTTTTCGACCCACTAGACGTCACAA--TCAGCATAGTGAAAGGTTGAGCATGATTCATTTCTG
s caeRem4.Crem_Contig0  1487392 162 -  4500979 ---attgttttcttctgattGAAACATCATCGTTTTG-TTGCATTCAAA--TGAGGATGTTTCGTCAGTAAATGCGCTTTCAGGTGAATTGAAGTAGGATTATTGTGTTTCTTTCAATGACCCACCGCACGTCAGCAACTCTTAGTAGTAAAA-------tgtgattcatttttg
i caeRem4.Crem_Contig0  C 0 I 647
s caeSp111.Scaffold622   227800 135 +   386604 GCTGTTGTTCCCAT---AATGAAACATCATC---TTG-TTGCGTTAAA-----------TTTCGTCAGTTGAAGCGCCCTCGGGTGAAACGAAGT-GAGTTGTTTTTCCCTTTCCACTAATTCACCGCACGTCACG--------GTAGTGAAA-------TATGATTTA------
i caeSp111.Scaffold622  I 41 C 0
s caePb3.Scfld02_0      2798045 142 +  4147112 ---attgttttcat-tcatcaAAACATCA------TG-TTGCAT---------------GTACGGATATTAATGCGCTTTCAGGTGAAACGAAGT-GAGACGTTGTTTCTTTCATACCGACCCTCCGCACGTCACAA--TCACCGTAGTAAAAATC----Tgtgattcatttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I

a score=1883.000000
s ce10.chrX             4559602 23 + 17718866 ATTTCTTCCTGATGTAC---TCAGTC
s caeSp111.Scaffold622   227935 26 +   386604 AGTTTTCCTTATATTACCAATCAGTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2798187 26 +  4147112 aggtTTCCTTCCTCCACCAATCAGTC
i caePb3.Scfld02_0      C 0 I 522
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeRem4.Crem_Contig0  1487554 647 -  4500979 I

a score=430.000000
s ce10.chrX             4559625 146 + 17718866 G-------------------------ATTGTCTAAAACTTCAGCTT----CAAGAA------------ATTTCGTACT---------AGTTGATTCCCTTTTTGCAGCTTTCGTTTTCT-------------TACATCAAAACGAAAAATTGCTAGATGAAATACTTACGAAC--TTGTGTTTGGCTTCAATTGTTATTCAAAATTTCTCA
s caeSp111.Scaffold622   227961 211 +   386604 AGAATccgtgtgtgtgtgtgtgttttgttttttgataatttagATCAGAACCAGAATTGTCAGTTTTGATTCCGCGTTGCAACgaaaagttattttcttGGCTTCGGTCTTAGTTCTTTGCCCACGTGTGTGCACATCACATCACTTAAAAACGAGGTGTGAAATTTAGAGACAACCATGTCTGGCTTCAAttgttattcaaattttgccA
i caeSp111.Scaffold622  C 0 I 331
e caePb3.Scfld02_0      2798213 522 +  4147112 I
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeRem4.Crem_Contig0  1487554 647 -  4500979 I

a score=0.000000
s ce10.chrX             4559771 1314 + 17718866  
e caePb3.Scfld02_0      2798213  522 +  4147112 I
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeSp111.Scaffold622   228172  331 +   386604 I
e caeRem4.Crem_Contig0  1487554  647 -  4500979 I

a score=622.000000
s ce10.chrX             4561085 163 + 17718866 CACTGAACCATGATTAATAG-TCAAAAACAAACACTATTGAAAATCGAG--------GGCTTTTGTTTTTGA--AATTTAATAAAAATGGTGTTTTTCGACCGATCGCAGCCCATTGTCT--GTGTGGTC----TTTTTCATTCAGATAGCATTTTCAAAGCAGAAAAGTGAATGTGTTA
s caeSp111.Scaffold622   228503 153 +   386604 CGTTGGCCCATAATGAGCGAAGCAAAAACAAACactattcaaaat-gagcttcccccaattttttttctcatctgaCTTG-----------ATTTTATGACTGATTA-----CTTATTTTGGGCTtgatcattcttttttgttcaat-------tttgaaactaagGA---TAAACGGAA
i caeSp111.Scaffold622  I 331 C 0
s caePb3.Scfld02_0      2798735 149 +  4147112 CGCTGGGCCATAATGAAGAGAGCAAAAACAAATActatagaaaaa-gaa--------gattcgcTTACTGGAGGCATTTGTGGAC-----CATTCTGTAAT--GTCG-----CTTTTTCT--TCGTGATCATTATTCTTCGTTCAGTCA--atctttg---ctcaaaa---aatgtttga
i caePb3.Scfld02_0      I 522 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeRem4.Crem_Contig0  1487554 647 -  4500979 I

a score=1981.000000
s ce10.chrX             4561248 123 + 17718866 ACGCTAATTATAATTTTCGTTTTTTTCCTCTTTTTCAAACA--TCTGGAAATAACATTCTCCGGCAT-TTGAAATTGAAAT---------TCTGGGTGTT---------TAATGTCTAGTCAAGAAGT-------------CTAGCATTTACGCA-------------AT--------------
s caeRem4.Crem_Contig0  1488201 145 -  4500979 ATGTTAATTATAGTttactttttcc-----gttttcaaacatctctgaaaatggcaaCATGTGGCAT-TACAAACTTTAGTctgc-----tttttatttt-------cttattgtcTAGTACAAAGTT----CCTCAGTTTTTGAGATCCA-----------------ACATTTCTTGcgcaat
i caeRem4.Crem_Contig0  I 647 I 32
s caeSp111.Scaffold622   228656 155 +   386604 ATGTTAATTATagg-ttcttttttc------aatccataca--tctgaaaatggcaACTTTTGATATGTCGGAAACATAGTCGGACacgttttgaattttatattgCATGAATAGTTTTCCTGATGTT----TCAAACTAGTGAGCATTTAGTGG-------------ACTTGTGTTTTGT---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2798884 165 +  4147112 atgcTAATTATAggtttcttcttat------ttttcagaca--tccAGAAATGGCAACTTTTGACAT-TAGAAAACA-GGTTGGA-----TTTGAATGTTGCCCTG-ATAAATGTTTCAACTAAAGTTCTACCCACATTCCTTAGCATTTACAAAATCTCTCAATGTTACATGAGTTTCAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I

a score=-1714.000000
s ce10.chrX             4561371 17 + 17718866 ------AACGTAAAAG-----------CATTCAA
s caeSp111.Scaffold622   228811 22 +   386604 ------GATGTCGAAAATGAC------ATTCTCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799049 34 +  4147112 CTGGTAGGTTTCAACGATATCTCATCACTTCTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeRem4.Crem_Contig0  1488346 32 -  4500979 I

a score=684.000000
s ce10.chrX             4561388 15 + 17718866 ---------ACCCGCGTGCAG---------GTG
s caeRem4.Crem_Contig0  1488378 33 -  4500979 ACCCGTTTTTCTAAATGGCAGTGCTAACTCGTG
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold622   228833 15 +   386604 ---------TCCCACTCACAG---------GTG
i caeSp111.Scaffold622  C 0 I 53
s caePb3.Scfld02_0      2799083 15 +  4147112 ---------TCCTGATCGCAG---------GTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I

a score=-3685.000000
s ce10.chrX             4561403 41 + 17718866 ------------CCAT--------TTTTAACATTTAGAGTTTTTTTTGGTTCGGTAACAAT---
s caeRem4.Crem_Contig0  1488411 44 -  4500979 ---------TCCTCTT--------TTCTGACAAAAGTTTCTTTATTTAATTCT---ATAATTGC
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0      2799098 56 +  4147112 ATTGTTTGAACTTCTCAATCCAGATCCTAAAATAcgtttttctattgaa-------aaacttt-
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9853553 2777 + 21540570 I
e caeSp111.Scaffold622   228848 53 +   386604 I

a score=-795.000000
s ce10.chrX             4561444 5 + 17718866 ---CATTT
s cb4.chrX              9856330 5 + 21540570 CGTCA---
i cb4.chrX              I 2777 C 0
s caeRem4.Crem_Contig0  1488462 5 -  4500979 tttca---
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0      2799166 5 +  4147112 CACCA---
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e caeSp111.Scaffold622   228848 53 +   386604 I

a score=15992.000000
s ce10.chrX             4561449 301 + 17718866 GACTAACCAATGAGTCTTTTAAATTCCGAAAAAAAATCAGTGCACTTAAT-------TTCAAT------------ACGTCCAAAGTCT--GCCTGATTCGGGAGC------CGTAG----TGTTT-------TTGCAA--TAAACAGGTGAAA-ACGAT-----------GTGGCACAGCGCGATGGTG-ACGACAACATA-AACTGGGTAGGCGGCGCT---TGGAAACGCCTTCTGTTCTAGTCTGACCCACACGTGAGAGAT------------GAT-----ATTGAGAC--------------------------TAC-----------TCTTCCTTCTCTAGTGGTATA------------------GCAAAA--------AAAACTATTCCT------TCTTTTTTTACTTTTTATCGTACCGGTTTCCCAGCTCTGA-------------------
s cb4.chrX              9856335 377 + 21540570 GAATATCCAATGAGTTCTAT------------AAAACCGTTGCACTTCGT-------TTCTCCCTCGCTTTCCTCTCACACTAAGTCTAATCCCGATTCTGTAACGGCTCTCcgagagtttttttt------ttgcattctgTCCAGGTGAAA-AAGAGCCGGT------GTTACGTAGAGCGTGTGCG-GCGACAACGTATGAATGGGTAGGCGGCGTCAAATGGAACCGCC-CCTGTTCTGGTCTGATTCAAAAGTGTCGGATTGTGGCACGAAGAAGGTTCATTCTTGCT-----TGGTGG--AGC----------TTCCCAAGC-----TCATGCTTTCCCAGatgtttttcggttttcatgaAGCCTGAGTAG--------AAACGTTTCTATGAACGCTCTGATTCTCATGTATCATATATAGCCTCTC---CTCCTG-------------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1488467 328 -  4500979 aaagaaatgatGAGTTTTGTTATTGAG---AACAAAATTCTGcacttcag-------ttttct----tttcattctctccTTAAGTCTATGCCTGATTCTGGAGC------CATAG----TGTTTT------TTGCAG--TGAACAGGTGAAA-AAGCGTTGACACTC-GGCTACGTAGAG-------G-GTGACAACGTA-AACTGGGTAGGCGGCGTT---TGGAAACGCC-CCTGTTCTAGTCTGATCCAAA------GGAAGGTGCGATGAGAAAGAGTTCGTCAGGGT-----TGGCAG---------------TTCCCACGA-----G-ATGTTTTGTTTGGTgtata------------------aaacaa--------aaactgttctct------tttgattttcat-----acTCATTGTTTTTCAAGCTCTCA-------------------
i caeRem4.Crem_Contig0  C 0 I 194
s caeSp111.Scaffold622   228901 342 +   386604 GAATATCCTATGAGTTCTGACAGTTTA-----TGAAACACTGCACTTGAT-------TATTTC----TCCTCCTGGATTTCTACGTCTACACCTGATTCCGGAGC------AAGAG----CGTTTT------TTGCAG--TGAACAGGTGAAA---GCGCCTTCTTTTTGGTTACGTAGCG---------GTGACAGCGTA-GAATGGGTAGGCGGCGTT---TAGAACCGCC-CCTGTTCTAGTCTGATCCAAACATGTCAGAT------------Gaga----tttgagttttttccgACGGTCGCT----------TTCTTTGGG-----TATCACTTCTGTTCCTGTTCG------------------GAACAG--------ATACTTTTCTGT------TCCTATTTGTA-------ATCATTGTTCCCAGGTTTCCCATGTATCTTCAAGTACCTGA
i caeSp111.Scaffold622  I 53 C 0
s caePb3.Scfld02_0      2799171 373 +  4147112 GAATTTCTGATGAGTCAATCGAATTTT-----CACAACTCTGCACTTCGCTTCTACATGTTTC----GTTTTCCTGTGTCCAGCGTCTGTGCCTGATTCTGGAGC------catag----agtttttttttcttgcag--tgAACAGGTGAAACACGCCCCGAGGCACTAGTTACGTAGCA-------GTGTGACAACGTA-GAATGGGTAGGCGGCGTT---TAGAAACGCC-CCTGTTCAAGTCTGATCCAACCCCCTTAGAT------------AAG-----TTTGAGCT-----CGTCAGTCAGTGTGTGTTAGGTTCTCAGGAGATGTTGTTACTCCTCCTTGTTTGTG------------------GGAGAGGAGTGGGAACAGTTTCTTGT------CAGTACTTGAATA----CGTCGTCGTTCCTAGGTTTCCCATGT-------AGTACCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I

a score=-3016.000000
s ce10.chrX             4561750 13 + 17718866 AAGTTCAATGCTC-----------
s cb4.chrX              9856713 13 + 21540570 AAACTAAATATTC-----------
i cb4.chrX              I 1 I 19
s caeSp111.Scaffold622   229243 16 +   386604 -----GAAT--TCTTGGAAAACT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799544 19 +  4147112 -----AAATAGTTCTGAGAATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e caeRem4.Crem_Contig0  1488795 194 -  4500979 I

a score=-1049.000000
s ce10.chrX             4561763 10 + 17718866 AG-------TTTGTTGA
s caeSp111.Scaffold622   229259  8 +   386604 ---------GTTTTGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799563 17 +  4147112 ACCGGTTGAATTTCGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e cb4.chrX              9856726 19 + 21540570 I
e caeRem4.Crem_Contig0  1488795 194 -  4500979 I

a score=-13362.000000
s ce10.chrX             4561773 117 + 17718866 TCAAACAAAGCCTGAAAAA---------ATCTACTTTTTTCCGAGAA--------------TTTTTA-GATTTAAAATT----TTTTTCTTTGC---------------ATTGTTTTGTTTTGTCGAATTAATTTTCAAGTACGTAAGTACGTATGATTC----
s cb4.chrX              9856745 122 + 21540570 tcaaactttacttctaaaa---------atcaac--ttcTTAGAAAATAGAAACAGCTTTCTCTCTG-CATCGGTTGTT-TAACCCCACCCCTT---------------GTTTTCTGAT-------GATTGAGCTTCCA------AAATCCA-ATCAGCAATAA
i cb4.chrX              I 19 C 0
s caeSp111.Scaffold622   229267 133 +   386604 -----TTCtgcatttcgaa---------tttcaa--ttcttcaaatg--aacTCGTTTCCTTTTCTG-GATTTCTGATT---AATTTATTCCGTGGCAATCTGCTCACTAAtgtttgattttg---atttgagCTACTATTTTAGAGATcca-ataaac-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799580 123 +  4147112 -----Ttagattctttgaaaaactcttgtttc----ttttttgagag-------------ttttctgaaatttcacatTGCAAAACTGCTCACT---------------AATGTTTGGTTCTG--ATTGTGAGCAACTACTCCTTAAATCCa-ataaacagag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I
e caeRem4.Crem_Contig0  1488795 194 -  4500979 I

a score=-22923.000000
s ce10.chrX             4561890  80 + 17718866 -CAAGAATAGAATA----------------ATATA----A-ATTGAAAACCAAGCTTTACT-TTTTTCCTTGTTA-----TTATCTAGTTATTAC--TTGCATTT-------------------T----------------------CACC--
s cb4.chrX              9856867 135 + 21540570 ---ATAGTAGAGTGATTTCTTCCTCGCTCTGTTTA----TCCCAAAATGCCAAGATCTAAT-CTGTTTTTTATCT---TCTTATCTTGTTACGAA--CACTGTCT-GCATCCCAGCTTCCTCGATATAAAAAGAGA--CCAATTAGTGACT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1488989 120 -  4500979 -CAAAAAGAAAACG-------------CCCATTTA----T-CCAAAATCCCTTACTTTAGTGTTGTTATCTGCTTATGTTTTATCTGGTTATTCT--TACTATTT-GGCCACCAATCACATTG-CATAGCAAGGAA--CTA------GACC--
i caeRem4.Crem_Contig0  I 194 C 0
s caeSp111.Scaffold622   229400 131 +   386604 -aaaaaagaaaatcagttttttgtaataaaaTGCT----T-CTCTagtatttttcgtttta-atATTATCTGCTTA-TACATATTAGCTTATCCT--CAATACAT-CCCGATGGAACACATCG-TATTCCTAGTGA----A------AAACAa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799703 140 +  4147112 aaaaaaggaaaaacagtgTGGGATAAAACAGTTTTATCGT-CCCAAATCccttcctttttg-tttttatcttcTTATTATCCATCTGATTATTCTTCCACTATTTGGCCGACG--ACACATTC-TACTGCAAGCGATTCCA------AACC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   52061 1870 -   130595 I

a score=150887.000000
s ce10.chrX             4561970 831 + 17718866  
s cb4.chrX              9857002 730 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1489109 810 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   229531 823 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2799843 815 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   53931 752 -   130595  
i caeJap4.Scaffold17739 I 1870 I 2225

a score=5507.000000
s ce10.chrX             4562801 11 + 17718866 ACGGTTGTGAA
s cb4.chrX              9857732 11 + 21540570 ACGAATCTGAA
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0  1489919 11 -  4500979 GCGAATCTAAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622   230354 11 +   386604 ACGACTCTGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2800658 11 +  4147112 CCGACTctaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   54683 2225 -   130595 I

a score=-5811.000000
s ce10.chrX             4562812 29 + 17718866 GG-----CTTTTATT-CAAGTCTTAATTTGATAAG---
s caeRem4.Crem_Contig0  1489937 36 -  4500979 -gtcttctcattttt-caaataacaagTTGCCTGTCAT
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622   230365  9 +   386604 -------TCAtcatta----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2800669  8 +  4147112 -------tcattgtt-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e cb4.chrX              9857743 24 + 21540570 I

a score=-29823.000000
s ce10.chrX             4562841 499 + 17718866  
s cb4.chrX              9857767 574 + 21540570  
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0  1489973 479 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   230374 539 +   386604  
i caeSp111.Scaffold622  C 0 I 881
s caePb3.Scfld02_0      2800677 528 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17739   54683 2225 -   130595 I

a score=-9357.000000
s ce10.chrX             4563340  94 + 17718866 ------------GCACGTATGAGCAATGT-TTGTCAGAAACTGTGGGTTGATCA-----CGCAGATGTT----------TCCATTTGTATCACAAA----------AAAAAGAGGTGGC-----GGAATAT--TAGATA
s cb4.chrX              9858341 133 + 21540570 TTTA--CGCGTCGTTGTTGGGTACAATGA---GTGtatagttttgaaatgtttctcGGGGGCAGATGTTACAACACTGAGTGACTaacatgaaaaaattgctATCCATATCACCGTAACTTCCTGGAAAGT-GGAGACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1490452 110 -  4500979 ttcatttactCAATTATTAAGGACATTTAAATGAGTAAAATTGTGAGGTATTAC-----AGcagatgtt------ttctttttcctaaATGACTAA---------CAAAACAACACGAC-----GGGGTGT-GTAG---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2801211  97 +  4147112 ----------CCACATTGAAGGGCATTTAAATGTGTAGAATTGTGAGTTGTCGC-----CGCAGGTGTA-------------------ATGAAGCA-----TActgaagaggaaaaaactC---GAAGAGTAGGAGACA
i caePb3.Scfld02_0      I 6 I 1506
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I

a score=-1954.000000
s ce10.chrX             4563434 12 + 17718866 AGaaatttaaaa---------------
s cb4.chrX              9858474 27 + 21540570 AAACACATGGTGACTAGcagttcaaaa
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig0  1490562 21 -  4500979 -GAGGCATGAAAagtttctatt-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I

a score=1111.000000
s ce10.chrX             4563446 49 + 17718866 aaaaattaat----tCCCAGAATAGAAAACCAGTAAAGTGTAACAAAACGGAA
s caeRem4.Crem_Contig0  1490583 47 -  4500979 aaaaattaataacatccagaaatagaa------taaaaacaCACAAATCGAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e cb4.chrX              9858501 63 + 21540570 I
e caeSp111.Scaffold622   230913 881 +   386604 I

a score=-587.000000
s ce10.chrX             4563495 21 + 17718866 GTTCGAAAATATATGACGTAT--------
s cb4.chrX              9858564 21 + 21540570 aatagaaaatgcGTAAAGTCT--------
i cb4.chrX              I 63 C 0
s caeRem4.Crem_Contig0  1490630 21 -  4500979 --------GTTTATAATGTTTTGACGTAT
i caeRem4.Crem_Contig0  C 0 I 731
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I

a score=-2590.000000
s ce10.chrX             4563516 907 + 17718866  
s cb4.chrX              9858585 815 + 21540570  
i cb4.chrX              C 0 I 59
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I
e caeRem4.Crem_Contig0  1490651 731 -  4500979 I

a score=0.000000
s ce10.chrX             4564423 25 + 17718866 TCAAACACTGCTGCACGCAAGTAAT
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e cb4.chrX              9859400 59 + 21540570 I
e caeSp111.Scaffold622   230913 881 +   386604 I
e caeRem4.Crem_Contig0  1490651 731 -  4500979 I

a score=-7.000000
s ce10.chrX             4564448 248 + 17718866 GTTcaaatat---aaaacataacta----aaatcaaaaaccgtagataaatttttttt--------ggacgactttaaaaattttaataggt---------------------------gaaaaccaagcttt----cacatgtttgactgagcaaaaaa------tctcaaaaaatactttttggaaagttttacaatgattttcggtta---ttttagcaacgtgagtagtttttaaacaggccccccactggcgatactttgactGAATAAAACAAACCTA----AACCTTCTTAACGTTCCAA
s cb4.chrX              9859459 287 + 21540570 GCTCGAAAATTGACAAGTCTGACTAGCCCAGaaaaaaaaGCCCAGAAAATTCCGCTTTCTAAATTCGAGTaacttagaaaatttttaaaggtccaatttctatgaataaaatattctaaaaaaatacaactttATATCTTAGGTTCAATCAagcaaaaacgatttttcttatactttactttttt-aaagttctgCAAAAACTT--GGCTAAGATTCTGtcaaccgaaaaa------aaactgaccacCTActaaa-------tga--aaataaaaaccaCCTACTACAAATTGCTAAA--TTTAGA
i cb4.chrX              I 59 C 0
e caePb3.Scfld02_0      2801308 1506 +  4147112 I
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I
e caeRem4.Crem_Contig0  1490651 731 -  4500979 I

a score=-548.000000
s ce10.chrX             4564696 5 + 17718866 AACCT-
s cb4.chrX              9859746 5 + 21540570 -AACAA
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0      2802814 5 +  4147112 AAACT-
i caePb3.Scfld02_0      I 1506 C 0
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I
e caeRem4.Crem_Contig0  1490651 731 -  4500979 I

a score=534.000000
s ce10.chrX             4564701 5 + 17718866 TTCCA
s cb4.chrX              9859756 5 + 21540570 CGTGA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0  1491382 5 -  4500979 TCCGA
i caeRem4.Crem_Contig0  I 731 C 0
s caePb3.Scfld02_0      2802819 5 +  4147112 TTCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   54683 2225 -   130595 I
e caeSp111.Scaffold622   230913 881 +   386604 I

a score=15290.000000
s ce10.chrX             4564706 58 + 17718866 GGGCATTTGAACCCCGGAACTACA--TACTAAAAATAACAAGAAAGTCACGCTGGGAGCC
s cb4.chrX              9859761 45 + 21540570 GGGCGTTTGAACTCCGGAACT-----ACAGAGCAACA--CAGAGAGCCACCA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1491387 57 -  4500979 GGGCGTTTGAACTCCGGAACTTGGggaaatgaaaaca--gaaatagtCACGATGGTAG-C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   231794 55 +   386604 GGGAGTTTCAACCCCGGAACTAAA--ACGAAGAGAAC--AGAAAAGTCACGCTGGTAG-C
i caeSp111.Scaffold622  I 881 C 0
s caePb3.Scfld02_0      2802824 55 +  4147112 GGGAGTTTGAACTCCGGAactcaa--aactaaaaaca--tgGAAAGTCACGATGGTAG-C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   54683 2225 -   130595 I

a score=552523.000000
s ce10.chrX             4564764  981 + 17718866  
s cb4.chrX              9859806  990 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1491444  973 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   231849  946 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2802879 1011 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   56908  948 -   130595  
i caeJap4.Scaffold17739 I 2225 I 363

a score=11243.000000
s ce10.chrX             4565745 183 + 17718866 A-----------------------------------------------------------------------------------------------------------------------------------------CTATTTCT---------GC--------TGA-TCATCAAAAACTCAAAGAACCAGAACAATATAGTGGCAT-----ACAG----------GCGGTTG--CACTA-AAATTAAAATAAAC--AAAACGTTATCATAA------------------TCCTTCTGATTT--CTCGGCGACAAAATAATAATTCATGATATAATTTAAGACGCTCAGCAACGTTTT---------CCATAGTTTCGAAAGATCA
s cb4.chrX              9860796 273 + 21540570 A-ATCCATGTTTAGGAATTCAAGAG----ATCAGCCAGATGTTTAAAT-------------------------TCCTAGGGA----------------AACG---------------CAATGTTCTCGAACGAATCTGatgttttgaatgttttcatGTAGTCA-TAAGAAATCAAAAGTGCAGAGAACCGAAACAATATAGTGACAA-----ACTC----------A--------AACT--GATACGAAAGC--------GCGTTATCATAATAAGCCTCTTTGGATTTTTCCTCGGCGATTTCCTCGGCGGCATTAT------------CTTAATTTGAGACGATTAGTACATTCTCTC-------ACTTGGTCTCAAAAACCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1492417 274 -  4500979 ATACCCGGGTGCAACAACT--AGAACTTTATGATCTATGAGGGCATAT-------------------------ATGCAGGCA----------------ACCATAGTCCACAATGTTTCAATGTTCTGGCacaattttgatgtttta---------atgtagtca-caa-aaatcaaaagtgcaTAGAACCAAGACAATATAGTGGCAC-----ACACTGTGGAGggga--------aact--gaaattaaatCAAC--AAAACGTTATCATAA------------------TCTTCTCCAATT--CTCGGCGACATTAT------------TATAATTTAAGAAGATCagcaaatttttg----------ttgatttcaaaaaatca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   232795 267 +   386604 AAATCCGAG------ATTTGAAGTG----ATCAATCACATGTTC---TGATCTGTGAAACATAAAATGCAGTCACTCCGGAA-----------------------------AAGTTTCAATGTTCTAGAATATTTCCATTGTTTTA---------ATGTAGTGAGGGG-AAATCAAAAGTGCATAGAACGGAAACAATATAGTGGCTG-----ATTA----------A--ATCAAcaattagaaaatgaagtCAAC--TAAACGTTATCATAA------------------TCGTCTTATTTT--CTCGGCGACATTAT------------TATACACTAAGAAGATTTGG-----------------TCAAggtctcaaaaaatca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2803890 291 +  4147112 AAATGC------------TGAAGTG----ATCAGTCA-------------------------GAATTGCTG--ATCTATGAATCCTAGATGTGTGCTAAACGTATTTCTTTATGTTTCAATGTTCTAGCACAATTCTGATGTTTCA---------ATGTAATCA-CAT-AAATCAAAAGTGCATAGAACCAAGACAATATAGTGGCAGTATACATTC----------ACTATCGACAATTAgagaagaaaatcaacaaaaaacgtTATCATAA------------------TCCTCTTGATAA--CTCGGCGACATTAT------------TATACTTTAAGAGGATCAGACCTTTTCAAAGGGGTTTccaaaagtttaaaaaatca
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold17739   57856 363 -   130595 I

a score=546.000000
s ce10.chrX             4565928 1 + 17718866 A
s cb4.chrX              9861069 1 + 21540570 A
i cb4.chrX              C 0 I 11726
s caeRem4.Crem_Contig0  1492691 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 48
s caeSp111.Scaffold622   233062 1 +   386604 a
i caeSp111.Scaffold622  C 0 I 14
e caePb3.Scfld02_0      2804181 17 +  4147112 I
e caeJap4.Scaffold17739   57856 363 -   130595 I

a score=0.000000
s ce10.chrX             4565929 794 + 17718866  
e caePb3.Scfld02_0      2804181  17 +  4147112 I
e caeJap4.Scaffold17739   57856 363 -   130595 I
e cb4.chrX              9861070 11726 + 21540570 I
e caeSp111.Scaffold622   233063  14 +   386604 I
e caeRem4.Crem_Contig0  1492692  48 -  4500979 I

a score=359.000000
s ce10.chrX             4566723 6 + 17718866 CGAACA
s caeJap4.Scaffold17739   58219 6 -   130595 CGAACT
i caeJap4.Scaffold17739 I 363 C 0
e caePb3.Scfld02_0      2804181 17 +  4147112 I
e cb4.chrX              9861070 11726 + 21540570 I
e caeSp111.Scaffold622   233063 14 +   386604 I
e caeRem4.Crem_Contig0  1492692 48 -  4500979 I

a score=-89.000000
s ce10.chrX             4566729 3 + 17718866 -TTT
s cb4.chrX              9872796 3 + 21540570 -ttt
i cb4.chrX              I 11726 C 0
s caeRem4.Crem_Contig0  1492740 3 -  4500979 -TTG
i caeRem4.Crem_Contig0  I 48 C 0
s caeSp111.Scaffold622   233077 3 +   386604 -ttt
i caeSp111.Scaffold622  I 14 C 0
s caeJap4.Scaffold17739   58225 3 -   130595 CTT-
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2804181 17 +  4147112 I

a score=132578.000000
s ce10.chrX             4566732 121 + 17718866 TTACAGATTTTTCTTCCAATACGTATTCGCTGCCACGTCAGCAACGATCGTGTCTGGAGCGGTTGCAGAACGGTGTGAATTCGCGAATTACATCACTTATTGTTCAGTTATATCGAGTAAG
s cb4.chrX              9872799 121 + 21540570 ttccagattcttcttCCAATACGTGTTCGCCGCGACGTCAGCAACAATTGTGTCGGGAGCGGTTGCTGAGCGATGCGAATTCGCGAATTACATCACATATTGTTCGGTTATCTCAAGTTAG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1492743 121 -  4500979 TTCTAGGTTTTTCTTCCAATACGTGTTCGCTGCGACGTCAGCAACAATTGTGTCTGGAGCGGTTGCAGAGCGGTGCGAATTTGCAAATTACATCACATATTGTTCAGTTATCTCAAGTGAG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   233080 121 +   386604 ttgcagattcttcttccaatacGTGTTCGCTGCGACGTCAGCGACAATTGTGTCTGGAGCGGTCGCCGAGCGATGCGAGTTCGCAAACTACATCACTTATTGTTCAGTTATCTCAAGTGAG
i caeSp111.Scaffold622  C 0 I 24
s caePb3.Scfld02_0      2804198 121 +  4147112 tttcagattctttttccAATACGTGTTCGCTGCGACGTCAGCTACAATTGTCTCTGGAGCTGTAGCCGAGAGATGTGAATTTGCAAATTACATCACTTATTGTTCAGTTATTTCAAGTGAG
i caePb3.Scfld02_0      I 17 I 1
s caeJap4.Scaffold17739   58228 121 -   130595 TTAAAGGTTCTTCTTCCAATACGTGTTTGCCGCTACATCAGCAACCATTGTCTCAGGAGCCGTTGCGGAAAGATGTGAATTTGCGAATTACATCACTTACTGTTCAGTTATCTCAAGTGAG
i caeJap4.Scaffold17739 C 0 C 0

a score=-3582.000000
s ce10.chrX             4566853 19 + 17718866 TCGGAATCAGTTGT-GACAT-----
s cb4.chrX              9872921 20 + 21540570 CCTAAACAAAACGTAGACAT-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1492865 17 -  4500979 CCAAAAATACA---AGACGT-----
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2804320 18 +  4147112 CCAAAA--ACTTGTAGACGT-----
i caePb3.Scfld02_0      I 1 I 4
s caeJap4.Scaffold17739   58349 21 -   130595 ----AAAGAACCATGAATCTAATAG
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   233201 24 +   386604 I

a score=316105.000000
s ce10.chrX             4566872 647 + 17718866  
s cb4.chrX              9872941 661 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1492882 641 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   233225 634 +   386604  
i caeSp111.Scaffold622  I 24 C 0
s caePb3.Scfld02_0      2804342 631 +  4147112  
i caePb3.Scfld02_0      I 4 I 1864
s caeJap4.Scaffold17739   58370 582 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=234921.000000
s ce10.chrX             4567519 255 + 17718866 ACCTGGAGAGGGACATATTGTAGCGTTGGCAATGGTAAATACAATTCTTAGTGGAGCATTTGCTGCGTTGACATATCTTATTGCTCATTATTTGTATCATGGAAAATGGACACTCTTGCTGACGATTAACGCATGTCTCGCTGGAATGGTTGCTTCGTGTGCTGGGTGTAATAAGATGGAGCCATGGGCATGCATTTGGGTTGGAGTTGGAGCAGGTCTCATTTATTTGGGATTGAGCAAGCTGATGGTCAGGTA
s cb4.chrX              9873602 255 + 21540570 ACCTGGAGAGGGACATATTGTTGCATTGGCAATGGTTAATACAATTCTGAGTGGGGCGTTCGCTGCGTTGACCTACCTTATTGCTCACTACTTGTACCATGGAAAATGGACCCTCCTTCTTACCATTAACGCCTGTCTCGCTGGAATGGTTTCTTCGTGTGCCGGATGTAATAAAATGGAGCCATGGGCATGTATCTTTGTTGGAGTTGGAGCTGGACTTATTTATTTAACTCTTAGCAAGGTTATGATTAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1493523 255 -  4500979 ACCAGGAGAGGGGCATATTGTTGCATTGGCTATGGTTAACACAATTCTTAGTGGAGCATTTGCTGCTTTGACCTACCTCATTGCTCACTACTTGTACCACGGAAAATGGACACTTCTATTGACTATCAACGCTTGTCTTGCTGGAATGGTTGCCTCATGCGCCGGATGTAACAAAATGGAGCCATGGGCATGTATCTGGGTTGGAGTTGGAGCCGGACTCATCTATTTGACATTGAGCAGATCTATGATTAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   233859 255 +   386604 ACCAGGAGAGGGTCATATTGTTGCTTTAGCAATGGTGAATACAATTCTTAGCGGAGCTTTCGCTGCATTGACCTATCTCATTGCTCACTACTTGTACCATGGAAAATggactcttcttctcactatCAACGCCTGTTTGGCTGGAATGGTGGCTTCATGTGCTGGATGCAATAAAATGGAACCATGGGCTTGTATTTGGGTTGGAGTTGGTGCAGGACTATTGTATCTGACTTTGAGTAAAGCTATGATTAGGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2806837 255 +  4147112 TGCTGGAGACGGTCATACTGTAGCATTGGCAATGGTCAACACTATTCTGAGTGGGTCCTTTGCCGCCCTTACCTATCTTGGTGTTCACTACTATCAACACGGAAAATGGACACTTCTCCTGACCATCAATGCTTGTTTGAGTGGAATGGTGGCAGCCTGTGCTGGATGTAACAAGATGGAGCCATGGGCTTGTATCTGGGTTGGATGTGGTGCTGGTTTGATCTACCTCGCTTTCAGTAAACTCATGTTCAGGTA
i caePb3.Scfld02_0      I 1864 C 0
s caeJap4.Scaffold17739   58952 255 -   130595 GCCAGGAGAGGGACATATTGTTGCTTTGGCTATGGTGAACACTATTTTGAGTGGTGCTTTTGCTGCTTTAACCTACCTGATTGCTCATTACTTGTACCACGGAAAATGGACACTTCTCTTGACAATCAACGCTTGCTTGGCTGGAATGGTTGCCTCCTGCGCTGGTTGTAATAAATTTGAGCCATGGGCCTGCATTTGGGTTGGAGTGGGCGCTGGACTGCTTTATCTGACTTTGAGCAAGCTTATGGTTAGGTA
i caeJap4.Scaffold17739 C 0 I 43

a score=422.000000
s ce10.chrX             4567774 1 + 17718866 A
s cb4.chrX              9873857 1 + 21540570 A
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1493778 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold622   234114 1 +   386604 A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2807092 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   59207 43 -   130595 I

a score=-137.000000
s ce10.chrX             4567775 1 + 17718866 A
s caeSp111.Scaffold622   234115 1 +   386604 C
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2807093 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold17739   59207 43 -   130595 I
e cb4.chrX              9873858 19 + 21540570 I
e caeRem4.Crem_Contig0  1493779 34 -  4500979 I

a score=250.000000
s ce10.chrX             4567776 5 + 17718866 TAGTT
s caeSp111.Scaffold622   234116 5 +   386604 TATTT
i caeSp111.Scaffold622  C 0 I 23
e caePb3.Scfld02_0      2807094 40 +  4147112 I
e caeJap4.Scaffold17739   59207 43 -   130595 I
e cb4.chrX              9873858 19 + 21540570 I
e caeRem4.Crem_Contig0  1493779 34 -  4500979 I

a score=0.000000
s ce10.chrX             4567781 593 + 17718866  
e caePb3.Scfld02_0      2807094  40 +  4147112 I
e caeJap4.Scaffold17739   59207  43 -   130595 I
e cb4.chrX              9873858  19 + 21540570 I
e caeSp111.Scaffold622   234121  23 +   386604 I
e caeRem4.Crem_Contig0  1493779  34 -  4500979 I

a score=59.000000
s ce10.chrX             4568374 23 + 17718866 AAAATGTTCATTAAAAACCGATT
s cb4.chrX              9873877 18 + 21540570 aaaacacttttcaaatac-----
i cb4.chrX              I 19 C 0
e caePb3.Scfld02_0      2807094 40 +  4147112 I
e caeJap4.Scaffold17739   59207 43 -   130595 I
e caeSp111.Scaffold622   234121 23 +   386604 I
e caeRem4.Crem_Contig0  1493779 34 -  4500979 I

a score=577.000000
s ce10.chrX             4568397 3 + 17718866 AAA
s cb4.chrX              9873895 2 + 21540570 -aa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   234144 3 +   386604 aaa
i caeSp111.Scaffold622  I 23 C 0
e caePb3.Scfld02_0      2807094 40 +  4147112 I
e caeJap4.Scaffold17739   59207 43 -   130595 I
e caeRem4.Crem_Contig0  1493779 34 -  4500979 I

a score=1336.000000
s ce10.chrX             4568400 2 + 17718866 TT
s cb4.chrX              9873897 2 + 21540570 tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1493813 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold622   234147 1 +   386604 -t
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17739   59250 2 -   130595 tt
i caeJap4.Scaffold17739 I 43 C 0
e caePb3.Scfld02_0      2807094 40 +  4147112 I

a score=180287.000000
s ce10.chrX             4568402 297 + 17718866 TTCAGGCTGAAGATCGACGACCCACTGGATGCCTTTGCCGTACATGCTGGTGGAGGCTTCTGGGGACTAACCTCAGTTGCTTTTATTGGACATGACGGTGTAGTTTATTCGATTGGTAACACTATTGGTGGAGCTACAAATGGAGGTGATCAAATTGCTCAGGCATTTGCTGTAGG-TTTTCTTTTACAAATCAC--CAAAAACTTAAATGAACTA---------------------TTTTTAGCAACTTGGATGGCAATGGGTGTGCGCACTCGCAATCGTCACATGGTCAATTCTCTGGATGTGGCCTATTTTT---GCACT
s cb4.chrX              9873899 294 + 21540570 ttcagatggagaATCGACGATCCACTTGACGCCTTTGCTGTTCATGCTGGTGGCGGTTTCTGGGGACTCACCTCTGTTGCTATAATTGGACATGATGGAGTTGTCTACGCTATTGGAAATACTATTGGTGGTGCTACAGATGGTGGTGATCAAATTGCTCAAGCTTTTGCAGTACG--ATTTTTGTACGGAT---------TCTCAGAAtaagatttcgat----------------ttttcagcaactTGGTTGGCAATGGGTCTGCGCGTTGGCAATTGTGACATGGTCGATTCTTTGGATGTGGCCGATTTTC---GGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1493815 293 -  4500979 TACAGATGGAGAATTGATGACCCACTTGACGCATTCGCCGTACATGCTGGTGGAGGTTTCTGGGGTCTTACTTCAGTTGCTATTATTGGTCATGATGGTGTAGTTTATGCTATCGGTAACACAATCGGAGGAGCTACAAATGGAGGTGACCAAATCGCTCAGGCATTTGCTGTAAG----------------------------TGAAATAAGACAACTATTCTTATTTATTACCTATTTTTAGCAACTCGGATGGCAATGGGTGTGTGCACTTGCAATTGTAACCTGGTCCTTCTTGTGGATGTGGCCAATCTTT---GGACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   234149 293 +   386604 ttcagatgGAAGATTGACGATCCACTCGATGCCTTCGCTGTCCACGCTGGAGGTGGCTTCTGGGGACTGACTTCTGTAGCAGTTATGGGTCATGATGGAGTGGTTTATGCAATTGGTAACACCATTGGAGGAGCGACAGATGGTGGAAATCAAGTTGCTCAAGCGTTTGCTGTAAG---TTTTACCATCTATTA----ATCTCGAAAAGTATGATA---------------------TTTTCAGCAACTTGGATGGCAATGGGTCTGTGCTTTGGCTATTGTAACATGGTCTGTTCTCTGGATGTGGCCGATATTC---GCtct
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2807134 251 +  4147112 tttaGACTGAAGATTGATGACCCTCTTGATGCTTTTGCTGTGCATGCTGGAGGTGGTTTCTGGGGTTTGATGTCATCTTCAATCATCTCTCATGGTGGATTGGCATATGCTTTAGTTGGTTCAATTTCTGGAGCTGAAAATTCCGGTGATCATTTGACCCAAGCTTTTGCT-------------------------------------------------------------------------CAACTTGGTTGGCAAATGATCTGTGCTCTAGCAATCGTGGTCTGGTCAATCTCCTTCATGTATCCAATTTTCTGGGTACT
i caePb3.Scfld02_0      I 40 I 139
s caeJap4.Scaffold17739   59252 305 -   130595 ttcagatggaGAATTGATGATCCTCTTGATGCTTTCGCTGTTCACGCTGGAGGTGGATTCTGGGGTCTCACTTCAGTTGCAATTATTGGTCATGATGGTGTAGTTTATGCTATCGGAAACACTATCGGTGGAGCTACCGATGGAGGCGATCAAATAGCACAAGCGTTTGCGGTGAGAGTTCATTCCGCCTATAGCAGAGTACAGAAAAACAAGTCTATTAA----------------ATTTCAGCAGTTGGGATGGCAATGGGTTTGTGCACTTGCAATTGTGACATGGTCTATTCTTTGGATGTGGCCAATCTTT---GGACT
i caeJap4.Scaffold17739 C 0 C 0

a score=220716.000000
s ce10.chrX             4568699 369 + 17718866 GTTGAGGA---------------------AAATAGGAAAACTTAGAGTGTCCGCTGAGGTGGAGATTAATGGATTGGATATCTACAAACATGGAGAGTCGGCCTACCCGCTACACGCCTACGGACACGGGTGGCACGATTTCGAAGCTGCTCCAGACAGCAAAATCAATCATAGTAAACATC---TTCC--------------AGTTGGAAGAAAGAACAGAATAATGAGTGTTCATCCAGAAAGTAAATC------TTAAAAAAAAAAACGTTTTTTGAAACCAAACAGCATTTTTTCAGTGTCCTTGGAACAACTTGCGTCAGTATACGACAGGACTGGAAGTGTTGGAGAGTCTGATCAACCAAAGAGGCTA--------TTTATGAATCAAACTGAGAGGAGAAAATCCAGAATGAT
s cb4.chrX              9874193 370 + 21540570 TTTGAAGA---------------------AGATTGGCAAACTCCGCGTGTCTGAGGAGGTTGAGATTAATGGATTGGACATTTATAAACACGGAGAATCAGCCTACCCACTTCATGCTTATGGTCATGGATGGCATGATTTTGAATCGGCACCAGATACCAAAGTAAACCATAGCAAACACC---TTCC--------------AGTGGGAAGAAAGAATCGAATCATGAGTGTTCATCCAGAAAGTACGTTGAAACTTGAATATTCATAAAACTTC---AATCCAT--CCCCCATTTTCAGTGTCATTGGAACAGCTCGCTTCGGTATATGATAGAAGTGGAAGTGTTGGAGAAACCGATCAACCCAAAAGGCTC--------TTCATGAACCAAATGGAAAGAAGAAAGTCGAGAATGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1494108 369 -  4500979 ATTGAAAA---------------------AGATTGGCAAACTTCGTGTCTCCGAAGAAGTAGAAATCAATGGACTTGATATTTACAAGCACGGAGAATCTGCATATCCACTTCATGCTTATGGGCACGGATGGCATGATTTTGAATCAGCACCATCCAGCAAAGAAAATCATAGTAAACATC---TTCC--------------AGTTGGAAGAAAGAATAGAATTATGAGTGTTCATCCAGAAAGTAAGTC---ACACAATgctactgaaaatttg---aattcacaACTTTCAATTTTAGTGTCCCTGGAACAATTGGCATCAGTTTATGACAGAAGTGGAAGTGTTGGGGAATCGGATCAACCAAAGCGACTC--------TTCCAGAATCaaatggagagaagaaagtCTAGAATGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   234442 364 +   386604 tttgaaga---------------------agattGGAAAGCTTCGAGTTTCCGCCGAAGTAGAGATCAATGGTCTTGATATCTACAAACACGGAGAGTCCGCTTATCCACTTCATGCATATGGACACGGATGGCATGATTTTGAGTCTGCACCGGATAGCAAAGTGAATCACAGCAAGCATT---TGCC--------------GGTTGGAAGAAAGAATCGTATCATGAGTGTTCACCCAGAAAGTACGAT---ATTTTATTAGATTAAAAACGtt--------aaaactttattttaCAGTGTCGCTAGAACAATTGGCTTCTGTGTACGATAGAAGTGGAAGTGTTGGAGATTCTGACCAACCGAAAAGATTA--------TTTATGAACcaaatggaaagaagaaagtctCGAATGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2807524 392 +  4147112 tatgaaaacatttcgaacCTGTTTTCTTCAGACTGGAAAACTTCGTGTCTCTGAGGAAATCGAAATCAATGGATTGGATGTGTTCAAACATGGAGAGATGGCTTACCCACTGAGAGCCTACGGACATGGATGGCATGATTTTGA----------GAGAGCCAACAAGATT----CAAGCATTCAGTGCCAAAATTACAGTCGGGGAAGGGAAAAACACAAGAATCATGAAAATCCATCCAGAGAGTAAGAT---G--CTAAAAAGTCATatgcttt-----ttgaaacattgctTTTTTAGTGTCTATTGAACAACTTGCGTCAGTTTATGACAGAAGTGGAAACATCA-----TCCCAATGCCCAAAAAGTCCAGAACCCTCTTCACAAACCCTGCAGAAAGGAAATTGTCTCAGATGAT
i caePb3.Scfld02_0      I 139 T 2637
s caeJap4.Scaffold17739   59557 371 -   130595 TTTgagga---------------------aaatcggaaaacttCGCGTGTCAGAGGAGGTTGAGATCAATGGATTGGATATTTACAAACACGGAGAGTCAGCCTATCCATTGCATGCTTATGGCCACGGTTGGCACGATTTTGAAAAGGCGCCAACTTCAAACAAAGATCACATCAGATCTC---TTCC--------------AGTTGGAAGGAAAAACCGCATCATGAGTGTCTATCCAGAAAGTGCGTG-AGAACTTATTTAGTTGTTTACTGT---AGATGTAGAAATGTTGTTTTAGTGTCTCTTGAACATCTTGCATCGGTTTACGACAGAAGTGGAAGCGTTGGAGAGGCTGATCAACCAAAACGACTT--------TTCACCAATCAAATGGAAAGAAGAAAGTCGCGAATGAT
i caeJap4.Scaffold17739 C 0 C 0

a score=56541.000000
s ce10.chrX             4569068 261 + 17718866 TGAAGCAAATGCACTT---CATGCATTGTACTTAGATGATAATGAGGTTCCTGAAAGGAAAAACACAAATCCAAAGACTGTCAGCTTACAAGTCCCCACAACAATTATTGAGGCTGCAGAGGATGA------GGCTGATAAA------ATGACAGAAAACGATCGGATGTAA---------ATTGCATAATTTAGAACTA-ACCGATGCTT-----TTAGGTT-TT-CGATGAACACTTTTC---CTATTTGTAT--------------TTAATAATTGTATCATCATT---------CAATTTCATGTATATTATGCC
s cb4.chrX              9874563 282 + 21540570 AGAAGCAAATGCTTTG---AGTGCACTGTATCTTGATGATAATGAAGTCCCAGAGAGAAAGAATACGAACTCAAAAACAGTTAATCTACAAGTACCTACCACTATTGTTGAAGCACCagagactgaaattttgactaccgaagaagagaagaaagaatcCAACTGGATGTAATACCTGCATAATATAGAGTCGATTTTATCTTTGGTAATCTATAATTcggtt-tt-tgatgaaaattcttC----TATTTGTAA--------------TTATT--TCGGATTCTT------------GTCCCCCTTGTATATTCTACT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1494477 281 -  4500979 GGAAGCCAATAATTCGTTTAGCAATATGTATCTTGATGACAATGAAGTACCGGAGAGAAAGAATACAAATCCAAAGACCGTCAGCCTACAAGTCCCAACCACCATCGTTGAAGCTCCAGAAGAAGAAACGTTGACCACTGAA------CAGCAGGAATCAAACTGGACCTAA-AGCGGCCTATTGCATAATTTAGTACAT-TCTGGTAACT----ATTAGGTT-TTATGATGAACATTTATC---TTATTTGTAA--------------TTAGT--TGGAgtcatttttgac------gttttctgtGTATATTATTCC
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold622   234806 267 +   386604 GGAAGCAAATGCAATG---AGTAATCTTTATCTTGATGACAACGAAGTtccagagagaaaaaatacaaatccAAAATCTGTTAGTTTACAAGTACCAACTACAATTGTGGAagctccagaagaagaaattctgaatacgGAT------CA---------AAACTGGACTTAAAATTGTTCGAATGCATAATTTAGTTCTT-TTCACTGATT-----GTAGGTT-TT-TGATGAACAATATGC---CTATTTGTAT--------------TTAAT--TTGACTTCGATTCAA-------CTATACCCTGTATATTCTAAA
i caeSp111.Scaffold622  C 0 I 6
s caeJap4.Scaffold17739   59928 286 -   130595 AGAAGCTAATGCTCTC---AGCAATTTGTATTTGGATGATAGTGAAGTGCCTGAAAGAAAAGTTGCAAATTCAAAATATGTCAGTCTTCAAGTGCCA---ACGATCGTAGAGTCAGCTGAAActgaagaagagaaaaaagaagaagagacAAATGAAACTAGTTGGACTTAA----------GTGCATAATTAA-------TTTAGTAATA------TAGGTTATT-TGATGAACGTTTTACTGTCTATTTGTATACTTAAAAGCAACGCTATT--CCCTGTTCTCTTCGTTTAGAGAACACAATTTGTatattaccg-
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T

a score=-152.000000
s ce10.chrX             4569329 17 + 17718866 TCTTTTGGAA-----------TCGAAAT
s caeSp111.Scaffold622   235079 17 +   386604 TGTCCAAAGG-----------TTAAAAT
i caeSp111.Scaffold622  I 6 C 0
s caeJap4.Scaffold17739   60214 28 -   130595 tattttgaaataaattctgttttgaaaa
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e cb4.chrX              9874845  3 + 21540570 I
e caeRem4.Crem_Contig0  1494758 29 -  4500979 I

a score=34915.000000
s ce10.chrX             4569346 259 + 17718866 AGAAAAAAATT-GCGATCAAAATCTGTCGAAAAGTATCATTTTAAAATATTGAACAATG-ATATCTTA--AAACAAATCTGAAGGTCA--TTTTTTCACATCTTGGTT--GTTGGA--TGTGTCAATCACA-------CAG-ACACAACTAGAGAGTAACTTTTTGTAGTC-TCAC-----TTTTTT----------------GT------------TGAGAAAACTATTTGATAGATTGATGATAATCGTCTTGTTTGGA----------TTTT-AGTTGGGGAACTTTTCAA-GTGAAA--TGAAGGAAAATATTATCTCGTC
s cb4.chrX              9874848 257 + 21540570 ---------AT-GAAAGTTTATCTTG-------------ATTC---ATACTGAACAATG-ATTTCTTATTAAA-----CTAAAGGTCA--CTCTTTATCTCTT-------GATAGA--TGTGTCAATCACAAAGAACGCAG-ACACAGCTAGAAAGTAACTTTTTGTAGTCAtcttcgacgtcttcttcacAACTTCTTAACTCTTTTTTCTCGGTATGCGACAACAAAAGGATAGAT---TGATAATCGTCTTGTTTGTG----------TTGC-ctcaaaagaatttttgacagTAGAA----------GATATCATTTCACC
i cb4.chrX              I 3 I 1585
s caeRem4.Crem_Contig0  1494787 259 -  4500979 Ggagatgaaat-gaaaactaaacttgtcaaaaa-tatcTTCTT---ATTCTGAACAATG-ATTTCTTA--AAA-----CTGAAggtca-tttttttctcactttgaaAGAGATAGA--TTCTTCAATCACAGAGAACGCAG-ACACAACTAGAAAGTAACTTTTTGTAgtc-tcttcgtcttctttt------------------------------cgcGACGACGAAATGATAGAT---TGATAATCGTCGTGTTTGTG----------TTGC-CTCATAAGAACATTCAAGGGTGAAA--TGAAGC--AATATCATAACGTC
i caeRem4.Crem_Contig0  I 29 I 5
s caeSp111.Scaffold622   235096 268 +   386604 GAAGATGTCATCGAAAACCAAATCTGTCAAAAAGTATCACTTC---ATACTGAACAATG-ATTTCTTA--AAA-----CTGAaggtcattttttctgtcacTTCGA----GATAGATGTGTGTTAATCACAAAGAACGCAG-ACGTAACTAGAAAGTCACTTTTTGtagtc-tctc-----tctttt----------------ctctcttctc----gaCGACGACAAAGTGATAGAT---TGATAATCGGTTTGTTTGTG----------TTTCAACCATAAGAACTTTtagatttgaaaagagaagg--ggTATCATCTCGTC
i caeSp111.Scaffold622  C 0 I 787
s caeJap4.Scaffold17739   60242 246 -   130595 -agataaaaat-caCTTTCAATCGTGtcaagaaaaattgtttt---tctcggTAGATCACAATTCTGT--GAA-----CCAGAGGTCA--CGCTTGCGTTTCTTCACATGAATAGT--TGCATCTGTT----------CAGAACACAATCC-----TACTGTTTTGTAGTC----------TCTTTT----------------A-------------CGCAATTAAAGTGTTAAAGAT---TGATAAGTATCTTGTATTTGCctattttccttct-tttttggAAACTTTTCGG-GTAAAC--TAAAAA--GATAACGTCTTGTG
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T

a score=546.000000
s ce10.chrX             4569605 2 + 17718866 AT
s caeRem4.Crem_Contig0  1495051 2 -  4500979 AT
i caeRem4.Crem_Contig0  I 5 C 0
s caeJap4.Scaffold17739   60488 2 -   130595 AT
i caeJap4.Scaffold17739 C 0 I 202
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e cb4.chrX              9875105 1585 + 21540570 I
e caeSp111.Scaffold622   235364 787 +   386604 I

a score=548.000000
s ce10.chrX             4569607 69 + 17718866 TCTTGAATCGAACCGAATCAGTTATCAATTAAAT-TTTGATAATTATTGATAAGATTTCTGATGGATTTT
s caeRem4.Crem_Contig0  1495053 64 -  4500979 T------TCGCGACCATTTTGATTTCAAGAAGATACTTTGTCAAGATTAATTGGATTTCTAATTGGTTTT
i caeRem4.Crem_Contig0  C 0 I 526
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e caeJap4.Scaffold17739   60490 202 -   130595 I
e cb4.chrX              9875105 1585 + 21540570 I
e caeSp111.Scaffold622   235364 787 +   386604 I

a score=0.000000
s ce10.chrX             4569676 1136 + 17718866  
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e caeJap4.Scaffold17739   60490  202 -   130595 I
e cb4.chrX              9875105 1585 + 21540570 I
e caeSp111.Scaffold622   235364  787 +   386604 I
e caeRem4.Crem_Contig0  1495117  526 -  4500979 I

a score=460.000000
s ce10.chrX             4570812 47 + 17718866 ATCGTTCACAATCTAATA-------AATATTTTTATTCGGTCGACATTTCATAC-
s cb4.chrX              9876690 55 + 21540570 ATcgttgaaattcgaatatgtTTCAAACATCATATCTCCGTTGTCTcttcacaca
i cb4.chrX              I 1585 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e caeJap4.Scaffold17739   60490 202 -   130595 I
e caeSp111.Scaffold622   235364 787 +   386604 I
e caeRem4.Crem_Contig0  1495117 526 -  4500979 I

a score=-303.000000
s ce10.chrX             4570859 4 + 17718866 --TTGA
s cb4.chrX              9876745 4 + 21540570 tttt--
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold622   236151 4 +   386604 --TTGA
i caeSp111.Scaffold622  I 787 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e caeJap4.Scaffold17739   60490 202 -   130595 I
e caeRem4.Crem_Contig0  1495117 526 -  4500979 I

a score=-1309.000000
s ce10.chrX             4570863 8 + 17718866 TCGCTT-AG-
s cb4.chrX              9876753 9 + 21540570 tcaaataaa-
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1495643 8 -  4500979 TCAACT-AG-
i caeRem4.Crem_Contig0  I 526 C 0
s caeSp111.Scaffold622   236155 8 +   386604 -CGGAT-AAC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2807916 2637 +  4147112 T
e caeJap4.Scaffold17739   60490 202 -   130595 I

a score=14822.000000
s ce10.chrX             4570871 42 + 17718866 TTTAAAGGTCATACGGTTCGAAAAGTGTC--ATCAAAGTT------TGTC
s cb4.chrX              9876762 43 + 21540570 CCGGAAGGTCAAACAGTTCGAAATGTAG---TCT----TTGCGAAACGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1495651 40 -  4500979 TCGGAAGGTCATATAGTTCGAAATGTAGCCATCC----TT------TGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236163 38 +   386604 TTAGAAGGTCATACAGTTCGAAATGTCTc--ctt----tt------tgtc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2805279 38 +  4147112 ttggaaGGTCATACAGTTCGAAATGTGTC--ATC----TT------CATT
i caePb3.Scfld02_0      T 2637 I 20
e caeJap4.Scaffold17739   60490 202 -   130595 I

a score=-2025.000000
s ce10.chrX             4570913  9 + 17718866 CTCTCTAAC---
s cb4.chrX              9876805 11 + 21540570 -CTTCAGGTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1495691  9 -  4500979 -CCTC--GCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236201  9 +   386604 tcttttgaC---
i caeSp111.Scaffold622  C 0 I 13
e caePb3.Scfld02_0      2805317 20 +  4147112 I
e caeJap4.Scaffold17739   60490 202 -   130595 I

a score=-1765.000000
s ce10.chrX             4570922  8 + 17718866 TC----ATGTGG
s cb4.chrX              9876816  9 + 21540570 GTT---CCAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1495700 12 -  4500979 CTTCCCCCGATG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2805317 20 +  4147112 I
e caeJap4.Scaffold17739   60490 202 -   130595 I
e caeSp111.Scaffold622   236210 13 +   386604 I

a score=20401.000000
s ce10.chrX             4570930 87 + 17718866 TTTTGTCACATTT-------GAAAACACAATGAATTG----GTT------G-TGAT--AGAACATCAACA-ATTCTTATTTGCAAATACGATTAAAAACTTTGGAAAT
s cb4.chrX              9876825 84 + 21540570 TGTTTTCACAGAT-------TT------AGTGGCATGTATGATCTTGTATGCTGGCATATAATAGCAACCGACGACTATTTGTGAATGCGAttatat-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1495712 86 -  4500979 TTTTGTCACATTTTGTTTCCTT------AACGGATTGACTAATC-TGTGTG-TGGC--AGAACATCAACT-ATTCCTATTTGTAAATGCGattaaat-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236223 85 +   386604 TTCTGTCAGATTC-------TTGAACACAACGGATTGGCCGGTC-TTTGCG-TGAC--ACAACATCAACC-ATGGCTATTTGCAAATACGattatat-----------
i caeSp111.Scaffold622  I 13 C 0
s caePb3.Scfld02_0      2805337 83 +  4147112 TTCTGccacattt-------ttgaatagaacGGATTGGACGGTC-TTT--G-TGAC--ATAACATCAACC-ATGCCTATTTGCAAATACGAttatat-----------
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17739   60490 202 -   130595 I

a score=103640.000000
s ce10.chrX             4571017 316 + 17718866 AGGAAAAAAGAAAACAAAGTCGTAACTTGATAC-TAAAATGTTGCG--GTCTACCCAAACAAAAC--ACATCATC-TCAAAAATT--GTTATAAAAGGCCTCCAAGACAGTT------ATTATTCTTAA--AAA-----------TTATAACAATTTC---TAGT-TGAGTCCCGTTCATCACTCGGCATTTGAAAAGATATA---CTACTGTCCCATCCGATTCT-----------GTTTCAATTTGTGA---------CAAAAACTGACCGCGAGAACATCATTGATCAAAAAGTTGTGATATCTGTTAACTT-------TTGTTGCGCAAAAAA-----AAAGTGTAAT-AAAAACCGAAAACCAGTAAGTAGTTATCAT
s cb4.chrX              9876909 320 + 21540570 ---aaaaaagaaaacaaagtcGTTACTT----------CAGCTGAA--TTTTACGCAAAC-ACCCTTACATCACC-TTAAAAAT----GTATATAAGTCACCATATGCTGTGGAAAA-ATCAGTCGGGATCAAAATTTGACTAGATCCTATTCTATAT---ATATATGAACCTGTCCTTTCA------------CAGTGCATT---CTTTTG-CCCATCCATCTCT-----------GTCGTACTTTGTGAATT--GAACCGAAAAGTGAC--CGTGAACATCAGtgatcaaaaagttgtga-------taacttctttctcttcttgaccgaaaaaaaagtaaagtgTAATAAAAAACCGAGAACCAGTAAGTAGCTATCAT
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1495798 310 -  4500979 ----aaaaagaaaacaaagtcGTTACTTGATAC-CATAAAGTTACC--GTCTACACAAAC-ATTC--ACATCACCTTTATAAAT----GTATATAAGTCGTTGCAACATGTGGGAAA-ATCATTCGGGATCAAAAACT-------TCCCGCTGTCTGA---AAGT---AGTCTCTCCAGTCA---------TTTCAGTGCATA---CTTTTG-CCCATCCATATCT-----------GTCGTACTTTGTGACCCCGCgattaaaaattgac--aaagaaCATCAGtgatcaaaaagttgtga-------taaCTT-------TCGTTAGGCGAGAAA-----AGAGTGTaataaaaaaccgaaaaccaGTAAGTAGTTATCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236308 312 +   386604 ---aaaaaagaaaacaaagtcGTAACTTGATACTTAAAAAGTTGCA--GTCTACCCAAAC-ATTC--ACATCATC-TTGAAAATA--GGTATAAAAGCGATTGAAATTAGGGGAAAATTTTAGTCTGGATCAAA-----------CTGTGGTGTTTTT---AAAA---GACTTTATTTGAGA--------GTTCGAGTACATTGTCCACTAG-TCCGTTACTTTCT-----------GTTGTACTTTGTGATCTGGCGATTAAAAACTGTC--CGAGTACATCAGtgatcaaaaagttgtga-------tAACTT-------TCGTTGCGCGGAAA------AAAGTGTAAT-AAAAACCGAAAACCAGTAAGTAGCTATCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2805420 313 +  4147112 ---aaaaaagaaaacaaagtcGTAACTTGATACTTAAAAAGTTGCATCGTCTACCCAAAC-ATTC--ACATCATC-TTGAAAATA--TGTATAAAAGGTATTTGAAACGGGTGAAAATTTTAGTCTGGATcaat-----------ttgtgttgttttcagaaaaa---agattcacCAGAAA--------GTTAAGGTACACT---CTATTG-TCCATCAGTTTCT-----------GTTGTACTTTGTGATCTGACGAttgaaaactgac--cgagaACATCAGtgatcaaaaagttgtga-------tAACTT-------TCCTT-CGCGCGAA------AAAGTGtaat-aaaaaccgaaaaccaGTAAGTAGCTATCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   60692 286 -   130595 aagaaaaaggaaaacaaagtCATTACCCGGTCA-----CAGATGTt--gt---cgccaaa-attt-----tttct-gcaaaaattcGACTATAAAAACAATAGAATGCCGCATTTT--GTCACCCAGGACCA-------------TGCTAGTCTGTTC---TTGA-----------TAACCA------------------------CTATTT-TCCCACCGTTTCTCTCTCCATCTCATCGAACTTTGTGTCCAGTCGATCAAAAAGTGGC--TAAGAACATCAGCGATTAAAAAGTTGTGA-------CACTTA-------TCACCGCGCAG---------ATTGTGTAAC-ACAAACTGGAAACCGGTAAACAGTTTTCAT
i caeJap4.Scaffold17739 I 202 C 0

a score=-255.000000
s ce10.chrX             4571333 16 + 17718866 TCGAAAAGAGAAAAAC
s caeRem4.Crem_Contig0  1496108 16 -  4500979 TCGATCGGGTTAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236620 16 +   386604 TCGatcggagaagaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2805733 16 +  4147112 TGAGTGggaggaagag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   60978  5 -   130595 TCAAC-----------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9877229 19 + 21540570 I

a score=1176854.000000
s ce10.chrX             4571349 1900 + 17718866  
s cb4.chrX              9877248 1773 + 21540570  
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0  1496124 1798 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   236636 1706 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2805749 1727 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   60983 1869 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-9940.000000
s ce10.chrX             4573249 59 + 17718866 agtgtggtattccacgtttgaattaaagcctagtggaagcactaccatcaaac-------gtacct
s cb4.chrX              9879021 21 + 21540570 AAACCGGTTTTCT--------------------------------TATCAAAC-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1497922 24 -  4500979 ACAATAATGTCACA-----------------------------AACATCAGAT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   238342 24 +   386604 GAAACAGtatc----------------------------------aatcaaaaagtgt--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2807476 26 +  4147112 AAAACGCTATC----------------------------------AACCAAAAAGTATCT------
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold17739   62852  0 -   130595 C

a score=-10693.000000
s ce10.chrX             4573308 83 + 17718866 gactctctactccgcaacgcataacgcttgaggatcggattgtcttttaaGCAACCCTAAAACaaaattaaattatataattt
s cb4.chrX              9879042  5 + 21540570 --------------------------------------------------------------CAAAA----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1497946  5 -  4500979 --------------------------------------------------------------GAAGA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   238366 24 +   386604 --cTCTC------------------------GGGTC--------------------------GAAAAGTGA-------CAAAC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2807502 51 +  4147112 I
e caeJap4.Scaffold17739   62852  0 -   130595 C

a score=-1155.000000
s ce10.chrX             4573391 10 + 17718866 aaactattat
s cb4.chrX              9879047  6 + 21540570 ----TGTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1497951  9 -  4500979 -TACTGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   238390 10 +   386604 CGGTTATTTC
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17739   62852  6 -   130595 AAACTA----
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2807502 51 +  4147112 I

a score=292987.000000
s ce10.chrX             4573401 393 + 17718866 aGACTGGAAAGCTTCGCGTCTCAGAAGAAGTGGAGATCAATGGGCTGGATGTATTTAAGCATGGAGAGATGGCATACCCACTCCGAGCATATGGTCATGGATGGCACGACTTTGAACGGGCGAATAAGATCCAAGCATTTAGCGCAAAAATTACAGTAGGAGAGGGAAAAAATACGAGGATCATGAAGATTCATCCTGAAAGTATGT-----TGATTTGAAC----TATA----------AATCCAA-----AAACCAATAACGT--TTTTAGTGTCCATTGAACAATTGGCGTCAGTGTACGATAGAAGTGGAAACATCATACCTATGCCCAAAAAGTCCAGGACACTGTTCACAAATTCAGCTGAGCGAAAAATGTCGCAAAT------GATGTATGATGAGAATAAAATGTGAAAT-TA---ATTT----
s cb4.chrX              9879053 394 + 21540570 AGACCGGCAAACTACGTGTCTCGGAAGAGGTCGAGATCAACGGATTGGACGTTTTCAAGCACGGAGAAATGGCCTACCCACTCAGAGCCTACGGTCATGGATGGCATGATTTTGAAAGAGCCAACAAGATCCAAGCGTTCAGTTCCAAGATCACAGTAGGAGAGGGAAAAAACACCAGAATCATGAAAATCCATCCAGAAAGTAGGG-------CTTCTaaa----ta-at------ttcattttga-----aacacaTGATACT--TTGCAGTGTCCATTGAGCAGTTGGCATCCGTGTATGATAGAAGTGGAAACATAATTCCAATGCCAAAGAAGTCGCGTACATTGTTCACAAATCCATCGGAGAGAAAACTGTCACAGAT------GATATACAACGAGAATAAGATGTGATGA-TG---ATCA----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1497960 395 -  4500979 AGGTCGGAAAACTTCGTGTATCTGAAGAAGTGGAGATCAATGGTTTGGATGTGTTCAAGCACGGAGAGATGGCTTATCCATTGAGAGCTTACGGACATGGATGGCATGATTTTGAGAGAGCCAACAAAGTTCAAGCGTTCAGTTCGAAAATCACTGTTGGTGAAGGAAGAAACACAAGAATCATGAAGATTCATCCAGAAAGTATGA-------GTGATAGA----TAGAC------ATCAAGTTAT-----TACCTATAAGTAT--TTTCAGTGTCCATTGAACAACTTGCATCTGTCTACGATAGAAGTGGAAACATCATTCCAATGCCGAAGAAGTCTCGTACTTTATTCACAAACCCAGCAGAGAGAAAGCTGTCTCAGAT------GGTTTATGATGAGAATAAAATGTGATCT-TG---ACTT----
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold622   238401 392 +   386604 AGATTGGCAAACTTCGcgtttctgaagaaattgagatcAACGGTTTGGATGTGTTCAAACACGGAGAAATGGCCTATCCATTGAGAGCCTACGGACACGGATGGcatgattttgaaagagCCAACAAGATTCAAGCATTCAGTTCTAAGATCACAGTTGGAGAAGGAAAGAACACAAGAATCATGAAAATTCATCCAGAAAGTAGg--------------------tatat------atatttttgacgtctatcatttgaatat--tttcagtgtcCATTGAACAACTCGCATCAGTCTATGACAGAAGTGGAAATATCATCCCAATGCCCAAAAAATCGCGTACACTATTCACAAATCCAGCAGAAAGAAAGTTGTCTCAAAT------GATGTACGACGAGAATAAATTGTAGTCTATC---CTTT----
i caeSp111.Scaffold622  I 1 I 1
s caePb3.Scfld02_0      2807553 394 +  4147112 AGACTGGAAAACTTCGTGTCTCTGAGGAAATCGAAATCAATGGATTGGATGTGTTCAAACATGGAGAGATGGCTTACCCACTGAGAGCCTACGGACATGGATGGCATGATTTTGAGAGAGCCAACAAGATTCAAGCATTCAGTGCCAAAATTACAGTCGGGGAAGGGAAAAACACAAGAATCATGAAAATCCATCCAGAGAGTAAGA--------TGCTAAAAAGTCATat------gc-tttttga-----aacatt---gctT--TTTTAGTGTCTATTGAACAACTTGCGTCAGTTTATGACAGAAGTGGAAACATCATCCCAATGCCCAAAAAGTCCAGAACCCTCTTCACAAACCCTGCAGAAAGGAAATTGTCTCAGAT------GATGTACGACGAGAATAAAATGTGATCT-TG---ACTT----
i caePb3.Scfld02_0      I 51 I 1
s caeJap4.Scaffold17739   62858 409 -   130595 --------------CGAGTTTCCGAGGAGATTGAAATAAACGGGCTTGACGTGTTCAAGCACGGAGAAATGGCTTACCCGCTGAGAGCTTACGGACATGGATGGCATGATTTTGAGAGAGTTAACAAGTTTAACGCATTCAGCGCAAAGATTACGGTCGGAGAAGGGAAGAACGCTAGAATTATGAAGATTCACCCTGAAAGTATGTATTGTCTATTTGAAA----TTAATCAAAGaatatttttgt-----taattttctttttcattccagTGTCCATCGAACAACTTGCTTCCGTGTACGATAGAAGTGGAAATGTGATTCCAACGTCGAAAAAGTCACGCACTCTCTTTACGAATGAAGCTGAAAGGAAAAAGTCGGCGATGATGAAGATGCACGATGAGAATCAATTGTGAGCA-TGCGAATTATATA
i caeJap4.Scaffold17739 C 0 C 0

a score=-2598.000000
s ce10.chrX             4573794 13 + 17718866 ----------------------CAAATGTTCAAAT
s cb4.chrX              9879448 13 + 21540570 ----------------------taaatttgtaaat
i cb4.chrX              I 1 I 29
s caeSp111.Scaffold622   238794  7 +   386604 ----------------------TAAATGT------
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2807948  7 +  4147112 ----------------------TAAATTT------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17739   63267 27 -   130595 CATACATAAATTAAAGTTTAGTTAAAT--------
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1498355 35 -  4500979 I

a score=-2481.000000
s ce10.chrX             4573807 19 + 17718866 ---------------ATACTTTATTTTTCTCCAA----------------
s caeSp111.Scaffold622   238801 19 +   386604 ---------------ATTATTAGTCAAATTAGAA----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2807955 19 +  4147112 ---------------ATGATTAGTTTAATTAGAA----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   63294 50 -   130595 AAAAAagacatttaaatttttagttttctcCTATCGTTTCACTTCAATGA
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9879461 29 + 21540570 I
e caeRem4.Crem_Contig0  1498355 35 -  4500979 I

a score=-1102.000000
s ce10.chrX             4573826 20 + 17718866 ATTTTCTCGTTTTCTTCTTC
s caeRem4.Crem_Contig0  1498390 14 -  4500979 ------ACGTTCTTGTCTTC
i caeRem4.Crem_Contig0  I 35 I 1
s caeSp111.Scaffold622   238820 18 +   386604 --ATATCCATTCCCCacccc
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2807974 18 +  4147112 --ATATACATACATTTATAC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17739   63344 20 -   130595 AGTTTCTCGTGTACTCATTT
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9879461 29 + 21540570 I

a score=-9307.000000
s ce10.chrX             4573846 107 + 17718866 ATTTTCTCA----TTTCCTCATCACTTCAAT----GAAGTTT-----------------------------TT--ATGCTCTTT---GCCGTCGAATTAGTT-------------------------GTCACCCATGTCAGCCCAATAACCACCAACCCCTCTTA--TATTGTGCG--------------
s cb4.chrX              9879490 105 + 21540570 TATGTTTCG---------GTGTCACTTCAAT----GAAGTCT-----------Gtcattcaaaatattcattt--ttaccCTCT-----TGTCAAACTAGTTGCATGTATTG--GACACAATTCGAAACCACCCGTAC----------------------------------------------------
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0  1498405 130 -  4500979 ------------------ATTTTACTTCAAT----GAagtttc----------ttctctttgaaTTTCCATTC--CGTCCTTTT----CCGTCAAATTAGTTTCGTGCGTGGCTGTCACAATTC-CAATCACCCATGCCTACCCAATAACCAC---CTCCTTCCA---ACTGCAC---------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   238840 118 +   386604 tttctctcaatttttcctCATTCACTTCAAT----GAAGTTTCTtgtctatttctcttttg------caTGTC--TCTCCTTTT-----CGTCAAATTAGTT-------------------CAC-CAATAACCC--------------ACCTC---CTTCTTCCA---ATTGTAC---------------
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2807998 144 +  4147112 ATTCTCTCA------TCTCATTCACTTCAAT----GAAGTTTCTCGTCTATTCCTCTTTTATTTCATCTTGTCCGTTTCCCTTT-----C--CAAATTAGTTGCAT--------GACACAATTC-CAATCACCCACGTCTACCCAATAACCAC---CTCCTTCCA---ATTGCTCG--------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17739   63364 155 -   130595 -ATGTATTATACTTTTCCATTTCTCTTCCATTCCAGAATTCCC------------------------GGCGCT--CTTCTCTTTTCTGCCGTCAAATTAGTT----GGGTCGCGGACACATTTT-CCATCACCCCTGCAACCCCAATAACCGCC--TTCCTTCCACTCATTGCCC-TCTTATTTCGTGCa
i caeJap4.Scaffold17739 C 0 I 81

a score=-8181.000000
s ce10.chrX             4573953 34 + 17718866 GTTTACTGCGCGGGGCTCACC-----------------------CAATATCTAATCG
s cb4.chrX              9879595 23 + 21540570 -CTcattt----------------------------gaagctcaaaacgcCC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1498535 57 -  4500979 TCTTATTTCGTGCACGCCGCCAACTCCTTCCAACGGGAGTCCCGAAACCCGCCGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   238958 33 +   386604 CCTTCATTCATGAGTTGCTCC------------------------GACGTCTCTCCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2808142 37 +  4147112 CCCTGTTTTGTGAGTTGCTCCAAC--------------------AGACCCACCCCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   63519 81 -   130595 I

a score=180587.000000
s ce10.chrX             4573987 321 + 17718866 C-------------TGTCTCA-ACTAATT--ACAGCGTTTCGA--------------TCACCGCCTCCGCC---------------TCTCGTTCACCGTCATCATTTT-----------CACCCGAAAATTGGCGCC--TT---------------------------GACGGAATGGCAAAATGGTGGAAGAAGCAGGATG-TGA-----GTTGGCAAAACGG-----------------------------------------ACGGAAAGGAGAATGAAGAAGGCGAGCTTTTGTTGGGTGGGT---GCGCAAGAAGCCGTGGGCTTTTGTTTATTCCCCGGGGGACATGTGAAGCACACACACACACACACGAATACATGCGACGAATACAAAATGTGATTTTTGAGTTTTGTTA----------TCG-CAGTTTACTATACAACCATTGAATTTGTAAGTGT
s cb4.chrX              9879618 353 + 21540570 --------------------G-AATAATTAGAGAGCGTTTGGA--------------ATACTGCGCGCACG-------------------------CGGTGCTTTCTG----------TCACTCGAAAATTGGCGCC--TTTGACGGACGGAATGGGGTGCGGACGACGGCGA-------CGATGAAAATGGAAACAGGATG-CGA-----GTTGGCAAAATGGGGCGTGGAAGTGGGGagtgaagatgaagaagaataagaataagaagaaagaaaaagaagaa-gcgagCTTTTGT----TGGGT---GCGCAAGAAGCCATGGGCTTTTGTTTATTCCCCAGGGGAAATGTGAAGC--------------------ACATGCGACGAATacaaaatgtgatttttgagttttcacaACCTCCCGTTTTG-TAGTTCACTATACAACCgttaaaatgttttagat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1498592 293 -  4500979 T-------------CTTCTGG-ACTAATT--ACAGCGTTTGGA--------------ATACCGCGCGTGCTCAC-----------CCGCCTGTCACCGTCGTCATTTT----------CCACCCGAAAATTGGCGCC--TT---------------------------GACGG-------CGATGAAGATGGAAACAGGATG-CGA-----GTTGGCAAAacgg-----------------------------------------agaagaga-agaaagaagaa-gcgaGCTTTTGT----TGGGT---GCGCAAGAAGCCATGGGCTTTTGTTTATTCCCCAGGGGAAATGTGAAGC--------------------ACATGCGACGAAtacaaaatgtgatttttgagttttgccG----------TCG-CAGTTCACTATACAACCATTGAATTCGTAAAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   238991 296 +   386604 TTCACTCAAACCCCCTTTTCGAACTAATT--ACAGAGTTCTGA--------------ATACCGCCTGTC-----------------------ACACCGTCGTCATTTT----------CCACCCGAAAATTGGCGCC--TT---------------------------GACGG-------CAATGAAGATGGAAACAGGATGCCAA-----GTTGGCAAAACGG-----------------------------------------ACAAGA---AGAAAGACGAATGCGAGCTTTTGT----TGGGT---GCGCAAGAAGCCATGGGCTTTTGTTTATTCCCCAGGGGAAATGTGAAGC--------------------ACATGCGACGAATacaaaatgtgatttttgagttttgccG----------TCGCCATTTTACTATACAACCATTGAATTTGTAAGTAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2808179 302 +  4147112 TGGAACCCGGCGGTTGTCTCG-ACTAATT--ACAGCGTTTGGA--------------ATACcgcttctctc---------------tttctgtcACCGTCGTCATTTT-----------CACCCGAAAATTGGCGCC--TT---------------------------GACGGG-----ACGATGAAGATGGAAACAGGATGCCGA-----GTTGGCAAAAcgg-----------------------------------------gaaaga---agaaagaagaa-gcgagCTTTTGT----TGGGT---GCGCAAGAAGCCATGGGCTTTTGTTTATTCCCCAGGGGAAATGTGAAGC--------------------ACATGCGACGAATacaaaatgtgatttttgagttttgccG----------TCG-CAGTTTACTATACAACCATTGAATTTGTAAGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   63600 334 -   130595 -------------CCCGCCCG-ACTAATT--ACAAAGTCGGTAAACGCGCAGCGCAGAcgtcgcctatttctatttaTGTAAACGCCTTTTAGCCCCATCACCACTTTCATATTATTCCTACCCTAAATTTGACAACaaca---------------------------aacag------aaaaaaatggacgAAATAGGAGT-AAAGGGCTGTGGGGAGGGCGG-----------------------------------------AAAAC----GGAAAGAAGAG---CAGCTTTTGT----TGGGTGCGGCGTAAAAAGCTATGGGCTTTTGTTTATTCCCCGGGGGAAATGTGAAGC--------------------ACACGCGACGAATACGAAATGTGATTTTTGAGTTTTGCAG----------TTT-CGAGTAACTATACAATCGTGGAATTTTTgagggt
i caeJap4.Scaffold17739 I 81 I 909

a score=16879.000000
s ce10.chrX             4574308 274 + 17718866 ACGCGCAAGGTCACTA--TCCCGAAT--CTCGGCTTCGG-GGCTCTTTTTC-----------------------------------------CATTGTTTTTTCCAGCATTATGCTC----------------------------------------------CGAATCT------GAATCTCAATTCAATTTTCAGACGTTT------GTTTTCGCTTGTCC-----ATTTCAAGTTTTCAGC------------------TGGTGTACAAATTATAGCTGTAC--------ACCCATTTTA----TTTAACACA----------------AAGCACAACGAAAAAATAA-----GATGACGACGACCAAATCGTCTTCAAATTTCCGGCGAATTGTTTCTCAATTTC-----CGCCG--------------------TCTAAATTTGTGAGAAAAAA
s cb4.chrX              9879971 355 + 21540570 ct---tACGTCCCAAGGTCCTCAGTT--CTCGGATTCTCCAGTTGCTCATT--------------------------CAGTAGGCAAGATCtcattgttttt-----catt-ttcttcctccagtttttttcccagtttttgcccctattttttttcaaccggCAGTTTCGACATTgtcttcaaattcaattttccagtcttcttttcgttttctgttttcca-----gagtattttttcagaggctctgttttGTTGGCCAAGACTTACTA--CTATACTAcaa-----------ctttctcatttttccccaCT----------------aaaaaaaCACCAAGACC------------------------------CGAATTTCCGGCGAAttgtttctcaatttcctgt-CGTTGgggcaaaaatggaaaagggCTTTAAATTTGTGAG--AAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1498885 328 -  4500979 AC---CAAGgtcaaaactccaaaactcGCTTAGTTTCAgtagttttttctt--------------------------cagttgga-------caatgttttt----gcatt-ttgtc----------------------------------------------CAGTCTCGACTTTGTCttcgaattcaattttctagttttc------tgttctgttttcag-----aattgcaGCTTCTGG---------TCGTGGTCCGAGACTTTCAAAGCTTGActacaactttttaaaatctttcttATGTTTTCTGGTTTCTATAGtccttgagaaaaaaaaaatgaaaatcaa----gaaagaagacgtctgaattttcatcaaatttccgGCCAattgtttctcaatttcctgtGCATCG--------------------TCTaaatttgtgagaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   239287 323 +   386604 CC---GAAGGTCA-----CCATGGGT--CTCGGTTTCAG-CGTTCTTTTGTCTCTGTTGCAGAAAAACGACGGAAAACGAACGAA-------ACATG-TTTT----GAGTCGCCATC----------------------------------------------TAGACtc------gttttcgaattcaattttccagtcgtc------ttttctgttttcag----atatttcagattccagt-------tttttt-----tggctttctGTCCATCGCTATAC-------AACTTATTTTCCTTCTCTAGTGGT------------aaataagcaaaaaaaataggcagatgaaaaagaaaacgtcggaattttcttcaaatttccgGCGAAttgtttctcaatttcctgTGCATCG--------------------TCTAaatttgtgagaaaaaa
i caeSp111.Scaffold622  C 0 I 21
s caePb3.Scfld02_0      2808481 312 +  4147112 CC---CAAGGTCA-----CACT--AT--CTTGgtttcaa-agttatttttc----------------------aacacAGAAAGA-------ACATGTTTTT----AAGTCGttgtc----------------cagttttt----------------------cagtttc------gtgttcgaattcaattttctagactca------ttttctgttttcagcaaAGTTTTCCAGCTTCTGGCGTCATCATTCTTT-----CAGCGTTCCATCTAAGGCTATAC-------GAGTTTTTGTC-----Ttgtagaa------------aaatgagcaaataagaaaaccaa--gaaaaagaagacgtcggaattttctttgaatttccggcgaattgtttctcaatttcctgtGCATCG--------------------CCtaaatttgtgagaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   63934 909 -   130595 I

a score=-5345.000000
s ce10.chrX             4574582 23 + 17718866 AAATGCGCGCCACATGAAGCGCC------
s cb4.chrX              9880326  4 + 21540570 -------------------TGCC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1499213  4 -  4500979 -------------------aggc------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2808793 20 +  4147112 --------gcaaTCT-AGTGGTCTATGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   63934 909 -   130595 I
e caeSp111.Scaffold622   239610 21 +   386604 I

a score=-2706.000000
s ce10.chrX             4574605 27 + 17718866 CACTTCCAATACCCCAGTACCCC-----GTGC
s cb4.chrX              9880330 23 + 21540570 --AATCTAGTGCTCTAGTGGGTC-------AC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1499217 30 -  4500979 --aATCGAGTGGTCTACTGCCTCTTTTAGTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   239631 12 +   386604 -----------------TGCTTC---CAGTGC
i caeSp111.Scaffold622  I 21 C 0
s caePb3.Scfld02_0      2808813 12 +  4147112 -----------------TGCTTC---CAGTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   63934 909 -   130595 I

a score=31548.000000
s ce10.chrX             4574632 28 + 17718866 C-ATC-GAAAACCAATCATATCAAATTTCG
s cb4.chrX              9880353 29 + 21540570 C-AACAGAAAACCAATCatatcaaatttcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1499247 28 -  4500979 C-AAC-GAAAACCAATCAtatcaaatttcg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   239643 29 +   386604 CAAAC-GAAAACCAATCatatcaaatttcg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2808825 28 +  4147112 C-AAC-GAAAACCAATcatatcaaatttcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   64843 28 -   130595 C-ATC-GAAAACTGATCATATCGAATTTCG
i caeJap4.Scaffold17739 I 909 I 16

a score=5664.000000
s ce10.chrX             4574660 17 + 17718866 AAATTTAATG---CCCTCC--T
s cb4.chrX              9880382 20 + 21540570 aaattgaatgctactcgaa--a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1499275 17 -  4500979 aaattgaatg---CCCGGA--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   239672 19 +   386604 aaattgaatg---CCCCAACGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2808853 17 +  4147112 aaattgaatg---cCCAGA--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   64871 16 -   130595 I

a score=3281.000000
s ce10.chrX             4574677  91 + 17718866 A------GAAA----------------GGAAATT---------------------CTCACTTCAGGTT------GTTTTC--------TCAAAGTGCCTCATT-------TTTTCCTTTTCACTTCGTTGGATATTGTGT-CTATCCTATTTTTCC
s cb4.chrX              9880402 140 + 21540570 a------gaaaaacgacGAAATGGT--TGAAACGCGtttctccttctctctctttctcatttCAGGTTACGTCAATTTTT--------CCTTCATTCCTATTTCTGCtgtccttttttttcactcgGATAAATATTGCGTATTgtccttccttttt
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0  1499292 117 -  4500979 AC--CATGGAAAACGTCGACAAGATGGTGAAATG---------------------CTCACTTCAGGTT------GTTTCG--------GCTTTATTCTTCCCTCctcca-caatttttttcagttggatGGATATTGTGT-CTGTCCTTCCTCTTC
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold622   239691 121 +   386604 GCGTCTAAAAATGGGACGAAATGGT--GGAAACG---------------------CTCACTTCAGGTT------GTTTCAAAag----cttttcctcttctctttacca-cttttcttttcacttgGATGGATATTGTGt-ctatcttttctttcc
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0      2808870 111 +  4147112 ACCTCCTAAAATAAGA-GAATTGGT---GAAATG---------------------CTCACTTCAGGTT------GTTTCGAAAAGTGCCAtattctcttcta----------tttttttctactcgGATGGATATTGTGT-CTTTCCTCTTCC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   64887  65 -   130595 ----------------------aataaagaaata------------------------------gaAT------GCTGCA-------------GCTCTTCATT-------CCCCTTTTT------------AAATTGTtc-ctttcttttgttttc
i caeJap4.Scaffold17739 I 16 C 0

a score=-3919.000000
s ce10.chrX             4574768 13 + 17718866 --CCTCATCTCTG-TA
s cb4.chrX              9880557 11 + 21540570 --CTTCAAcattt---
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0  1499419 11 -  4500979 --CTTCAACATTT---
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0      2808981  9 +  4147112 -----CAACTTTTC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   64952 13 -   130595 tatttttactgAA---
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   239812 18 +   386604 I

a score=223221.000000
s ce10.chrX             4574781 643 + 17718866  
s cb4.chrX              9880568 660 + 21540570  
i cb4.chrX              C 0 I 424
s caeRem4.Crem_Contig0  1499430 630 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   239830 571 +   386604  
i caeSp111.Scaffold622  I 18 C 0
s caePb3.Scfld02_0      2808990 595 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   64965 686 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-4319.000000
s ce10.chrX             4575424 63 + 17718866 ATTTCTTTGCATCTCCTAGTCACTTTTCCGTCTTGTTCGACATAAATTGTACTACAATTTT-----------TG--
s caeRem4.Crem_Contig0  1500061 50 -  4500979 atttcttttcttctc---------cggTTTTCATGTTC-TTCAAAGTTGTACA--GATTcc------------g--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   240401 60 +   386604 ctttcttttcttctcactgTCCATCGACTTCT-TGTAC----------GTTCT--GATCTTTCA-TGCTGTCTT--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2809585 68 +  4147112 acttcttttcttctctatgTCATTCGCTTTCTgtgttcgaaaaaagttgtaca--gatttt----tgttttgta--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   65651 59 -   130595 -GTCCTTTTATTCATGTTGTC------------TGTTT--TCAATGTTGTACA--GTTCTTTCATTGctatttttg
i caeJap4.Scaffold17739 C 0 I 1743
e cb4.chrX              9881228 424 + 21540570 I

a score=-2976.000000
s ce10.chrX             4575487 24 + 17718866 TTTAA----ATT--------TTTCTGATTTT--GTTA-A
s caeRem4.Crem_Contig0  1500111 26 -  4500979 tttgaaa--ata--------ttatcgGTTTT--ACTGA-
i caeRem4.Crem_Contig0  C 0 I 394
s caeSp111.Scaffold622   240461 27 +   386604 TTATAAACCATG--------ttttctgcttt--gttc--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2809653 37 +  4147112 ctCAAGATCATGATtaggatttttcagttttcaatta--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I

a score=-15119.000000
s ce10.chrX             4575511 331 + 17718866 TTTTAAAACGTCAAGAAAATTAACTATTGGGAAAAGCTTGTTATTTTCTCACAGGCTAGAAAGTTTAAATTTAGTGCATACTTTGCATGtttaaaaataaataaaaataataaattCTGGTTTCTCTA--TGCCATTT-ACTATTAGA--AACATTACAAATGTTATTTTCTAGACTGAATCAACAAAAAGGGAACGTGTTCCTTTAAACTGACATGACAAATTTTTCTGCAAAATTACTAATCTTATTTGAAAACTATTAATTTTTGGTTTGCAATTGTCTAAATGAG---------------TTTTCAGACAAATTTTGTTAACCAACCTGAATTCTGCCAAGTAAAAC
s caeSp111.Scaffold622   240488 136 +   386604 tttgaaa--------------------------------aatatctttt----------------------------------------ttgaaaaata---ggaagcttttg---catttttctctaattaCCATCT--TTATTAAA--GGCAAT--------------------------------------------------------aagcaaaaaatgtttgttaGAGAC-----------------AGACAGAGGCTT---------------------------------------CTTTCTATGAAAT---------------------TACTCTGTGAaac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2809690 249 +  4147112 attgAAA--------TGAGTTGAC--TTGTGAAGTTATTgttattcttc----------------------------------------tgaaaaaaca-----aagcgagcgaaaaaaatttctcgagtAACCATCTGATAATCGAATTTGCAACAactctttgaactttttgactGATTCATCCCA------------TGATtcaaac-gaaacaaaaaacaattatgaaCCACCTCGAA----ACGTTagaattagaaattttagg-------------GAATGAGAAGTAAGATTTGTAGCATTCTGTTGTATTTGG-----------------TGCTAAGTAACAC
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I
e caeRem4.Crem_Contig0  1500137 394 -  4500979 I

a score=-527.000000
s ce10.chrX             4575842 74 + 17718866 GGATTGATGACAAAAATTGAATATATTTGTGGTCTCTTTTAAAGGTACGGCCATGAGAAAAATGATCAAACTCC
s caeSp111.Scaffold622   240624 36 +   386604 gaa----------------aatat-tttatagCTTCTCTTTGCGAT---------------------AAACTCT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2809939 42 +  4147112 I
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I
e caeRem4.Crem_Contig0  1500137 394 -  4500979 I

a score=-16641.000000
s ce10.chrX             4575916 324 + 17718866 ATTCTTATGGTAGACTTGTTATTTATTATTATAACACCTTTCACaaaaaaaataaattaattttaattttGAGTTAAATGTGGTAAAAACAGAATGTCTTTTTGAACCCCTACAAATATGT-TTGAATAGTTTGAACATAATTAAAACATGAAAATTTTCACCGGCTTTTTGATT----CACAATA--AACAAATT-----TCCAAAATTTTTTGAACAGTTCTT----CAATGATATT-------AGATAGTTTCATCACCATAGAAATGGGTTATAGTTATTCCCCCACTAGCCACACTCCACGTAGTATTAATTTGATTCTTA-ATCGGTGAATAGCTTTTTCTT
s caeSp111.Scaffold622   240660 181 +   386604 -----TTTCGAAACTAATCCaattag--------------------------aaaattg---------------------------agaCATCAT----------ACTTC--------TCCGTCAGatagattcaa--------aaatgtaaacTCTTTC-------------------TAAAATA--AACTATTTTGGT-TTCGAAAT------------TCCTTAGCCAATAAAATtaacgaaaagaaaa--taattactACTAAAATGTG-----------------------------------------------TTCGAAAAAGGGTCATTGATTCTTTCTT
i caeSp111.Scaffold622  C 0 I 19
s caePb3.Scfld02_0      2809981 257 +  4147112 atatttctCATAAACTTCctatttct--------------------------caaatta--tttGGTTCTGACCTC-------TGTAGTCacca-----------acttctgaaaaaattcgttgGACAAAATCAATCTGACACCAATTCTAATATTTTCA---GCTTATGGAGTTGATTAAAACATTATCAATATTAATATTTgcaattgataaaaataatcaCGACCTGATTGGGTTTTCCGAAGAATA----AGCCAATATGAGAGAGTGGGGTA----------CATTAAGCAT----------------------TTCTAATACTGCTTATTGGCCC------
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I
e caeRem4.Crem_Contig0  1500137 394 -  4500979 I

a score=-30.000000
s ce10.chrX             4576240 56 + 17718866 AAAACGCAGAAACAAATTCTCGAAATCCATTTTAATACACTCTAAAACATTGCAAA
s caePb3.Scfld02_0      2810238 48 +  4147112 AAAATG--GGAAGGAGGGCGCAAG------TTGAATGCTTTCTCGCTTATTGAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I
e caeSp111.Scaffold622   240841 19 +   386604 I
e caeRem4.Crem_Contig0  1500137 394 -  4500979 I

a score=-1240.000000
s ce10.chrX             4576296 34 + 17718866 ATGCGTTGCCATGCCATAG---GAGGTAGTGGTCTTT
s caeSp111.Scaffold622   240860 32 +   386604 ATGTGT-----TGCGGAAGAGACGGGAGTCCTGCTTT
i caeSp111.Scaffold622  I 19 C 0
s caePb3.Scfld02_0      2810286 31 +  4147112 --GTGCT-TTATGCGGTTG---CGGACAGCCTCCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I
e caeRem4.Crem_Contig0  1500137 394 -  4500979 I

a score=1614.000000
s ce10.chrX             4576330 17 + 17718866 CCGCGCGTGCTCGACAT
s caeRem4.Crem_Contig0  1500531 16 -  4500979 CCGCGTGTGTCCG-CAA
i caeRem4.Crem_Contig0  I 394 C 0
s caeSp111.Scaffold622   240892 16 +   386604 CCGCACGCTACCG-CAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2810317 16 +  4147112 AGTGGTGTGTCCG-CAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   65710 1743 -   130595 I
e cb4.chrX              9881228 424 + 21540570 I

a score=5168.000000
s ce10.chrX             4576347 16 + 17718866 CGTTGATTCACAAGCT----
s caeRem4.Crem_Contig0  1500547 11 -  4500979 CGTTGATTTGC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   240908 11 +   386604 CGTTGATTTGC---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2810333 11 +  4147112 CGTTGATTTGC---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   67453 15 -   130595 CGTTGATTTGC-----TTCC
i caeJap4.Scaffold17739 I 1743 C 0
e cb4.chrX              9881228 424 + 21540570 I

a score=206476.000000
s ce10.chrX             4576363 264 + 17718866 TTTCCGCATGCACAACATGTCGCTTATTTTTGGCCAGGGTGTTGGTGCCAATCAATAATATGCATGTGTTGACGC--GTCTGTTGGATGCGCGAGAGCCT---------------TGTGTGTGTGTGGT-CGGTGTGTGACGAGCGGCGGCCACCCTCGCTTTCCTCTCCCCCCATCCCAT----CGCGACCTCCTCTTTTGTGCATAACCCTATTTCTGCATATTTCACCTCCTCCCCCCCCCCCCCCACTTCTTTGTCTATA-TTTTATATATCTTTCTT-----CTCTT
s cb4.chrX              9881652 273 + 21540570 TTTCCGCGAGC---ATATGTCGCATA-TTTTGGCCAGGGTGTTGGTGCCAATCAATAATATGCATGTGTTGACGCGTGTCTGTTGGATGCGCGAGAGCTTGTGTATATGTATGCATATGCGTATGTGGTGCGGTGTGTGACG---AGCGGCCACCCTCGCTTCCCGTTTTCTTCCCTCCCTTTCCCGCGACCTCCTCTTTTGTGCATAACCCTATTTCTGCATATTTTGCCTTATT------------CCCTGCTTTGTCTACATTTTTATATCCCTTTCTTGTGTGGTCTC
i cb4.chrX              I 424 C 0
s caeRem4.Crem_Contig0  1500558 239 -  4500979 TTTCCGCATGC---ACATGTCGCTTATTTTTGACCAGGGTGTTGGTGCCAATCAATAATATGCATGTGTTGACGC--GTCTGTTGGATGCGCGAGAGCCT---------------------TGTGTGGT-CGGTGTGTGACG---AGCGGCCACCCTCGCTTTCC---TTCTTCCCTCCAT----CGCGACCTCCTCTTTTGTGCATAACCCTATTTCTGCATATTTCGTTTTATT----------CCCCCTTCTTTGTTTACA-TTTTatatctctttctt-----ctctc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   240919 232 +   386604 CTTCCGCATGC---ACATGTCGCTTATTTTTGGCCAGGGTGTTGGTTCCAATCAATAATATGCATGTGTTGACGC--GTCTGTTGGATGCGCGAGAGCCT---------------------TGTGTGGT-CGGTGTGTGACG---AGCGGCCACCCTCGCTTTTC--------CTCCCCAT----CGCGACCTCCTCTTTTGTGCATAACCCTATTTCTGCATATTTCGCCTTCTT------------CCCGTCTTTGTCTACA-TTTTatatctctttctt-----ctctc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2810344 236 +  4147112 CTTCCGCATGC---ACATGTCGCTTATTTTTCGACAGGGTGTTGGTGCCAATCAATAATATGCATGTGTTGACGC--GTCTGTTGGATGCGCGAGAGCCT---------------------TGTGTGGT-CGGTGTGTGACGA--AGCGACCACCCTCGCTTTTC--------CTCCCCAT----CGCGACCTCCTCTTTTGTGCATAACCCTATTTCTGCATAttttgccttctt---------tcccccttctttgtctaca-ttttatatctctttctt-----tcctc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   67468 204 -   130595 TTTCCGCATGC---ATATGTCGCATATTTTTGGCCAGGGTGTTGGTGCCAATCAATAGTATGCATGTGTTGACGA---------------------GCCT---------------------TATG-----CAGTATGTGACTA--GCCGGCCACCTTCACCATTC---CTCCCTCCCCCAT----C-CG--CTTCTCTTTTGTGCATAACCCTAT---TGAATATt-------ctt----------cccccttttttttccaaa-ttgtacatttctttttt-----ttttt
i caeJap4.Scaffold17739 C 0 I 816

a score=-565.000000
s ce10.chrX             4576627 43 + 17718866 TCCAC--------TTTCTATGTAAAGCTTG--ACATATTTTTATTAGAAACAG---
s cb4.chrX              9881925 43 + 21540570 ATCCT--------TCAAGAC----AGCTTGATACatatcttttttgtttggaagT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1500797 43 -  4500979 atctT--------CCTAGAT----TGCGAG-CCCAAAATATCTTTATTAGAAACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   241151 51 +   386604 atctTCACTTTCCTTTTCATATGAAGCTTa--acatatttttattattagcAA---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2810580 43 +  4147112 atctt--------tctctGTCTGAAGCTTG--ACATATTTTTATTAATAGCTG---
i caePb3.Scfld02_0      C 0 I 109
e caeJap4.Scaffold17739   67672 816 -   130595 I

a score=-3519.000000
s ce10.chrX             4576670  8 + 17718866 -----------ACATTTAT----------------
s cb4.chrX              9881968  7 + 21540570 ------------GGTTTGT----------------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0  1500840  8 -  4500979 -----------AAATTcgt----------------
i caeRem4.Crem_Contig0  C 0 I 267
s caeSp111.Scaffold622   241202 35 +   386604 Gcatcttctgtttttttgtatagtgttctttctat
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2810623 109 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I

a score=-711.000000
s ce10.chrX             4576678 3 + 17718866 TTA-
s cb4.chrX              9881977 3 + 21540570 -TTG
i cb4.chrX              I 2 I 81
s caeSp111.Scaffold622   241237 3 +   386604 ttt-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2810623 109 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=191.000000
s ce10.chrX             4576681 13 + 17718866 TCATTAAATAACC
s caeSp111.Scaffold622   241240 13 +   386604 tagttgaaaaggC
i caeSp111.Scaffold622  C 0 I 76
e caePb3.Scfld02_0      2810623 109 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e cb4.chrX              9881980 81 + 21540570 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=0.000000
s ce10.chrX             4576694 40 + 17718866 CTGAAATGTGCATCATTGAGGTTACCTTCACTATTTGTAA
e caePb3.Scfld02_0      2810623 109 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e cb4.chrX              9881980 81 + 21540570 I
e caeSp111.Scaffold622   241253 76 +   386604 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=499.000000
s ce10.chrX             4576734 28 + 17718866 ATTACAACTTTTTGTTGACTGTGGGCAG
s caePb3.Scfld02_0      2810732 28 +  4147112 ACTAGAAAAGTTTATTGAGTTCAGACAT
i caePb3.Scfld02_0      I 109 C 0
e caeJap4.Scaffold17739   67672 816 -   130595 I
e cb4.chrX              9881980 81 + 21540570 I
e caeSp111.Scaffold622   241253 76 +   386604 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=-984.000000
s ce10.chrX             4576762  3 + 17718866 -------------------TTT
s caeSp111.Scaffold622   241329  3 +   386604 -------------------TCA
i caeSp111.Scaffold622  I 76 C 0
s caePb3.Scfld02_0      2810760 22 +  4147112 TCTCTTTGATACTTCCGTCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   67672 816 -   130595 I
e cb4.chrX              9881980 81 + 21540570 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=139.000000
s ce10.chrX             4576765 109 + 17718866 TGATCTAATTACAGCTTCGTTTAAGCTTGATTGT--------------------TATTAATAATAATTT---------------------------------TTTCTTCTCACAATTATTA------------TTACCTACCCTTTTCCTTAGATAGCAGGTCACATTTTTCCC
s cb4.chrX              9882061 112 + 21540570 TCATTCGAATACATCCTCAT-----CCTcatttt-----------------------------------------gcttcttttttc---------------ttttttctcacggAGACCAGAAAAGAAGTCCTGAGCT-TCCTGCTCTTCCCATTTCTTTTCATACGCTCCAC
i cb4.chrX              I 81 I 1
s caeSp111.Scaffold622   241332 124 +   386604 TCACATAAATACATCTTCAT-----CTGTTTTCTCACGGCGACCAACCCCTGCATCTTGATCTCCATGCACACacgct------------------------ttttcttttattggCAACA------------TCAGCT-CCCTTCCCTCCA--------TTCATACTTTCTCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2810782 128 +  4147112 TCATTCAGATACatcctcat-----ctttttttc--------------------tcacgaaGACCAACTCTGCATGCTTATCTCCCCACATACACATACGGCTTTTCCTTCATTGGCAACA------------TCAGCT-CCCTCCTTTTCA--------TTCATACTTTCGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeRem4.Crem_Contig0  1500848 267 -  4500979 I

a score=27062.000000
s ce10.chrX             4576874 221 + 17718866 -------------TT--------------GCACTAATGAAGA------AGCAAGCTG------CTAGAG--ACACACTGA--AAATTCCG---CTTATTAGAATGCT--CCACACTTT-------ATG---------TGAATCTTGTTTCTGTTTCTTGTTTCTGTGTTGAGTTTCTGTGTTTATTTTTTGATGAAAAACAAAACAAAAACAATTTACGAAAAGATGCATGAAACGCAAATGCTTGTTGAGAATCGGAAATGTT----ACTTCA--GCACAAAAACACTTA
s cb4.chrX              9882174 233 + 21540570 -------------TTGAAGAATGTGATGAGCACTAATGATGAGC----GGAAAGAAG------CTAGACATACACTGTGT--ATCTTCA----ATTATTAGAAATCC--GGAGATGATGAGGAGCACG-----AAAAGGAAACATTTAGTGTTTCCGTATGTGTCTAG--------CCCATTTGTGCTCTTT----CTCCAAAACAACAACACTTT--TTTGGTACGGATGG-GCaaaaaaaCTTGTTGAGGCTCAAAAATGTT----ACTGCAACACAAAAACACTC---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1501115 221 -  4500979 -------------TT--------------GCACTAATGACGAGAGCAGGAAGAGAAG-----ACTAGAC--ACACCGTGC--AGTTTCCAACTATAATAAGAAAGCT--TCACAACAT-------ATT-----GAAAGGAA----------------TACTTGTCTAGTCGGTTTACTTGTTTatgttcttc----ttcaaaaataaaaacactttAGGATGGGGTGTGTGGTGTGCTAACACTTGTTGAGAATTGGGAATGTTACTCACTTCtacacaaaaaaacactta
i caeRem4.Crem_Contig0  I 267 I 372
s caeSp111.Scaffold622   241456 244 +   386604 TTGCTTGTTGCACTTCGAAATTGCCA---GCACTAATGACGAAG---GAAATAGCAGGCAAAACGAAAC--ACACCGTCT--AGCCTCTAACT-TTAT-AGAAATTTGCTCAAAGGAT-------GTA---GAGGAAGTGA----------------TGCTCGTGCATTCGGTTTACTTGTTTatgttctcttt-cttccaaaacaaaaacacttT----AGTTGTGTGTGGTGTGCTAAAACTTGTTGAGAATCGGAAATGTT----ACTTCAACACACAAAAACACTTA
i caeSp111.Scaffold622  C 0 I 423
s caePb3.Scfld02_0      2810910 239 +  4147112 TTGCTTGTTGCACTTCGAAATTGT------GACTAATGAAGA-----GAAGAGGCCG-----ACTAGAC--ACACCGTCTTCTTCTGCTAACTATTATAAGAAAGCT--TCAAAACAT-------ATatcgaaaaaggaga----------------agctCGTCTCGTCGGTTTACTTGTTTatgttccgtt---tttcaaaacaaaaacactttcGGGAGGGTTGTGTGGTGCGCTAAAACTTGTTGAGAATCGGAAATGTT----acttca--actgaaaaacactcA
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17739   67672 816 -   130595 I

a score=0.000000
s ce10.chrX             4577095 4 + 17718866 GAGA
e caePb3.Scfld02_0      2811149 4 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e cb4.chrX              9882407 0 + 21540570 C
e caeSp111.Scaffold622   241700 423 +   386604 I
e caeRem4.Crem_Contig0  1501336 372 -  4500979 I

a score=-851.000000
s ce10.chrX             4577099 41 + 17718866 GAGGTTCTTCAAATAGAATGTGTTCC---------CTCTGAGTGCTCGTT
s cb4.chrX              9882407 30 + 21540570 -GAgcactctgaaaaaaa-gtcgtccaaggtt------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2811153 49 +  4147112 -AACTGCTCAAAGAAGAATGTGGTTCGAGTTTTTGCCCTGAGAACTTGTT
i caePb3.Scfld02_0      I 4 I 342
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeSp111.Scaffold622   241700 423 +   386604 I
e caeRem4.Crem_Contig0  1501336 372 -  4500979 I

a score=-5455.000000
s ce10.chrX             4577140 866 + 17718866  
s cb4.chrX              9882437 736 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2811202 342 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeSp111.Scaffold622   241700 423 +   386604 I
e caeRem4.Crem_Contig0  1501336 372 -  4500979 I

a score=421.000000
s ce10.chrX             4578006 15 + 17718866 TTTCTTAAAAACTAA
s cb4.chrX              9883173 11 + 21540570 ctttttgaaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1501708 15 -  4500979 TTTCTTATAAATACT
i caeRem4.Crem_Contig0  I 372 C 0
e caePb3.Scfld02_0      2811202 342 +  4147112 I
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeSp111.Scaffold622   241700 423 +   386604 I

a score=-2261.000000
s ce10.chrX             4578021 49 + 17718866 TTCGAGACTTTGCATAGAAACGCCTTGATTTGGTCTTTCAACATCACAC
s cb4.chrX              9883184 20 + 21540570 -ctgcaaTTTGGCATGCAGTC----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1501723 32 -  4500979 GCTGAGATTC--CATGGAAACGTATCT--------TTCCAAC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2811544 32 +  4147112 TCCGAGATTC--CATGGAAacctcttt------tcttcca---------
i caePb3.Scfld02_0      I 342 C 0
e caeJap4.Scaffold17739   67672 816 -   130595 I
e caeSp111.Scaffold622   241700 423 +   386604 I

a score=-4759.000000
s ce10.chrX             4578070 39 + 17718866 ATTCCTACGTGAGGCTTCTTTCCCCGCTTCCCCCTTCAA
s cb4.chrX              9883204 33 + 21540570 --ACTCTCGTCTTTCTGTCTTT----CTCGTGCCAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1501755 35 -  4500979 ATACTTGCATGTTGCCACTTCT----ATTTCACTCACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   242123 29 +   386604 ATTGGTGCACGAGGCCCA----------ACCCCTCACTT
i caeSp111.Scaffold622  I 423 C 0
s caePb3.Scfld02_0      2811576 32 +  4147112 --ttttgcaCGATGCCCA-TTT----CTTCCCTCTATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   67672 816 -   130595 I

a score=90137.000000
s ce10.chrX             4578109 158 + 17718866 CCAACTCGAATTTCA--------AA-TTT--CCATTTCCAC------CACCTGCTCATAAATTTTTGAAAAC----CCGCCGCCGCTTTTCGTCTCCTCTCTTCA-------TCGTT----TCCACTTTGCGCA------------------------------AC----TTCTAGACATGGAAGAA---AACCGACAATCGAGAAAACCGCAAATTGTCGTGAGTT
s cb4.chrX              9883237 190 + 21540570 TCaactcgaatttca--------aatttt--ccattc---c------cACCTgctcataaatttttgaaaaccttccCTCCAACGCTTT-CTGTCTGCCTCTTCTACCTCAatcctc----ctttttcttcata-CCACActccaaaaaaactttc--------tc----tTCCAGATATGGAAGACGAAGACCGACCGTCGAGAAAACCACAAATTGTTGTGAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1501790 177 -  4500979 CCAactcgaatttca--------aa-ttt--ctattt---c------cACCTGctcataaatttttgaaaac-------ccgCCGcttt-cactctcttctttct-------ttttt----atttctttgcctatccactttctccgacttctttc--------tcacttttctagACATGGAAGAC---AATCGACGGTCGAGAAAACCACAGATTGTTGTGAGTT
i caeRem4.Crem_Contig0  C 0 I 48
s caeSp111.Scaffold622   242152 182 +   386604 TCAactcgaatttca--------aa-ttt--ccattt---c------cacctgctcataaattttttaaacc--acCctttgcttttct-ctctttctcccttcc-------acttt----atttctttggacactttcttttcacctctttctat--------tcCAGTTTCTAGACATGGAAGAG---AATCGACGGTCAAGAAAACCACAGATTGTTGTGAGTT
i caeSp111.Scaffold622  C 0 I 45
s caePb3.Scfld02_0      2811608 192 +  4147112 TCaactcgaatttca--------aa-tttgccCACTT---C------CACCTgctcataaatttttgaaaac-------ctgcttctctcctcctcttccatccC-------ATTTTGTTCATTCTTTTCAGTACCTGTTTTCTTCCTCTTATTTTACACGTTAACCAACTTCTAGATATGGAAGAG---AATCGACGGTCGAGAAAACCACAGATTGTTGTGAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   68488 191 -   130595 CTAGCTTGAGTTTCAAGTTCCAGAA-TTT--CCATTT---CAACCTGCACCTGCTCATAAATGTTTTAAACC----AACCCGcttttct--tcctttcaccaact-------tcctt----ccttttttcgaca-----tttcacgttttattttc--------gctcgtttccAGGCATGGAAGAAGAGAATTGTCGATCGAGAAAGCCACAAATTGTTGTGAGTT
i caeJap4.Scaffold17739 I 816 C 0

a score=546.000000
s ce10.chrX             4578267 1 + 17718866 T
s cb4.chrX              9883427 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2811800 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold17739   68679 1 -   130595 T
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   242334 45 +   386604 I
e caeRem4.Crem_Contig0  1501967 48 -  4500979 I

a score=311.000000
s ce10.chrX             4578268 2 + 17718866 CA
s cb4.chrX              9883428 2 + 21540570 CA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17739   68680 2 -   130595 TA
i caeJap4.Scaffold17739 C 0 I 162
e caePb3.Scfld02_0      2811801 39 +  4147112 I
e caeSp111.Scaffold622   242334 45 +   386604 I
e caeRem4.Crem_Contig0  1501967 48 -  4500979 I

a score=100.000000
s ce10.chrX             4578270 1 + 17718866 G
s cb4.chrX              9883430 1 + 21540570 G
i cb4.chrX              C 0 I 41
e caePb3.Scfld02_0      2811801 39 +  4147112 I
e caeJap4.Scaffold17739   68682 162 -   130595 I
e caeSp111.Scaffold622   242334 45 +   386604 I
e caeRem4.Crem_Contig0  1501967 48 -  4500979 I

a score=0.000000
s ce10.chrX             4578271 677 + 17718866  
e caePb3.Scfld02_0      2811801  39 +  4147112 I
e caeJap4.Scaffold17739   68682 162 -   130595 I
e cb4.chrX              9883431  41 + 21540570 I
e caeSp111.Scaffold622   242334  45 +   386604 I
e caeRem4.Crem_Contig0  1501967  48 -  4500979 I

a score=133.000000
s ce10.chrX             4578948 11 + 17718866 AACACATAGTC
s cb4.chrX              9883472 11 + 21540570 AACACAATAAT
i cb4.chrX              I 41 C 0
e caePb3.Scfld02_0      2811801 39 +  4147112 I
e caeJap4.Scaffold17739   68682 162 -   130595 I
e caeSp111.Scaffold622   242334 45 +   386604 I
e caeRem4.Crem_Contig0  1501967 48 -  4500979 I

a score=38.000000
s ce10.chrX             4578959 1 + 17718866 C
s cb4.chrX              9883483 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1502015 1 -  4500979 c
i caeRem4.Crem_Contig0  I 48 C 0
e caePb3.Scfld02_0      2811801 39 +  4147112 I
e caeJap4.Scaffold17739   68682 162 -   130595 I
e caeSp111.Scaffold622   242334 45 +   386604 I

a score=14385.000000
s ce10.chrX             4578960 169 + 17718866 TAG-TTTTGTTGTTGTGATGACTCGT-CGC----------TTTTCTTAT--CAGTACTA-CATTAGAAGAA---TATTAACTCACAA----CGCCTAACAGGTCAACTGTATTATTAG----------------TTGCTCTCTT---TAAATCA---GTTTTG-----TGAGCGTTGTTGCTTTTG--------CGTT---------------CATTT------------TCTCTATATACATACACA---ACTTG--
s cb4.chrX              9883484 202 + 21540570 TTG-TTGCGTTGTTGTGATGACTCGTACGC---------GTTTTCTTATCACAGTACTATCAGTT---------TTCTGACTCACAGCGCTTCTCTAACA--------ATATTGTTGGGTC--AATGT--ATACCTACACTCTCGCAAAAATCA---GTATCGCTCGACGTGTTGCATTGCTTCTT-----TTCCGTT---------------CCTCTGCCACACTCTCAtccttatttttttgttcgttcggcta--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1502016 157 -  4500979 cAA-GTTTGTTGTTATGATGACTCGT-Tgc---------tttttcttat--cagtgcTGTCAATG---------TTCT--CTC--------TATCTAACA--------ACATTATTCTATCAGAATGTCCATACTTACTCTTCC---CAAGTCA---GTTTC------TGTGCGACGTTGCTTCCt--------cgtt---------------tctc-------------tctctatttt-----------ggtta--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   242379 181 +   386604 TAG-TATTGTTGTTGTGATGACCCgt-tgct--------tttttcttat--caatatTATCTATTGCACTG---TACTGACTCAT------TCTCTAATA--------GTATTATTAG--------GTGTACCTTTGTCCTTCA---CAAAACC---GTTTTG-----TGCGTGGAAAtgcttttctc---tctcattgcctatacttctctctctc-------------tctctcactt-----------gGTTA--
i caeSp111.Scaffold622  I 45 C 0
s caePb3.Scfld02_0      2811840 194 +  4147112 TAGTTATTGTTGTTGTGGTGACTCGT-TGcttattcccatttttcttat--cagtacTATCAGTTGTACTAATCTTCTGACTCAC------TATCTAACA--------AACTTATTGGGTCAAGAAGTATACACTTgtccttca---aaaaagtcagtttttg-----tGCGTTGCAATGcttatttcgcatctcatt---------------tctc-------------tctctatttt-----------tgttatt
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17739   68682 162 -   130595 I

a score=144393.000000
s ce10.chrX             4579129 466 + 17718866  
s cb4.chrX              9883686 508 + 21540570  
i cb4.chrX              C 0 I 240
s caeRem4.Crem_Contig0  1502173 434 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold622   242560 403 +   386604  
i caeSp111.Scaffold622  C 0 I 25
s caePb3.Scfld02_0      2812034 422 +  4147112  
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17739   68844 491 -   130595  
i caeJap4.Scaffold17739 I 162 C 0

a score=-413.000000
s ce10.chrX             4579595 13 + 17718866 ACATTACTAATTT
s cb4.chrX              9884434 13 + 21540570 tttttcttcttct
i cb4.chrX              I 240 C 0
s caeJap4.Scaffold17739   69335 13 -   130595 attttccgggCTC
i caeJap4.Scaffold17739 C 0 I 601
e caePb3.Scfld02_0      2812456 23 +  4147112 I
e caeSp111.Scaffold622   242963 25 +   386604 I
e caeRem4.Crem_Contig0  1502607 52 -  4500979 I

a score=37.000000
s ce10.chrX             4579608 4 + 17718866 TCGT
s cb4.chrX              9884447 4 + 21540570 tcaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2812456 23 +  4147112 I
e caeJap4.Scaffold17739   69348 601 -   130595 I
e caeSp111.Scaffold622   242963 25 +   386604 I
e caeRem4.Crem_Contig0  1502607 52 -  4500979 I

a score=176874.000000
s ce10.chrX             4579612 200 + 17718866 AATATTTAT--TTTCAGGTCCCTCGGTCGATTCAATTCGATGAAAGTTCTGACGAATACAGATGTCTGTGCAATTGCTTCCATGTTAAAACGGGTGCCTTCATAATTGGTTGCGTTCACGTTCTTATGATTCTATTCTTCCTGATTCACAGTTTATTCGTCTACTTCCAACATGATGGACGGTTACAGCAGGTAATATATTT
s cb4.chrX              9884451 198 + 21540570 aactttaat--ttccAGGTCCCGCGCTCCATACAATTCGACGAGAGTTCCGAAGAATACAGATGCTTGTGCAATTGCTTTCATGTCAAGACGGGTGCCTTCATAATCGGTTGTGCACATGTTCTAATGATCCTCTTCTTCCTTATACATAGTCTATTCGTTTATTTCCAACACGACGGAAGGTTACAGCAGGT--TTGACTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1502659 191 -  4500979 -------at--tttcaggTTCCCCGCTCGATCCAATTTGATGAAAGTTCTGAAGAATACAGATGCCTATGCAATTGTTTTCATGTCAAAACAGGCGCTTTCATAATTGGCTGCGTTCACGTCCTCatgattctctttttcctgATCCACAGTCTTTTCGTCTACTTCCAACACGATGGACGGTTGCAGCAAGT--TGGTTTT
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold622   242988 187 +   386604 ------------ttcagGTTCCTCGTTCGATCCAATTCGACGAAAGTTCTGAAGAATACAGATGTTTGTGCAATTGCTTCCATGTTAAAACGGGTGCTTTCATAATTGGTTGCGTTCACGTTCTCAtgatcctcttcttccttatTCACAGTTTATTTGTATATTTCCAACATGATGGAAGGTTGCAACAGG---TACATTT
i caeSp111.Scaffold622  I 25 C 0
s caePb3.Scfld02_0      2812479 190 +  4147112 -------AT--TTTCAGGTTCCACGGTCAATCCAGTTTGATGAGAGTTCTGAAGAATACCGGTGTCTGTGCAACTGCTTCCATGTCAAAACGGGTGCTTTTATAATTGGATGTGTTCATGTTCTGATGATCCTTTTCTTCCTTATCCACAGcttgtttgtttattttcaacatGATGGAAGGTTACAACAGG---TAATTTT
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold17739   69949 202 -   130595 AACATTCATTCTTCCAGGTCCCACGCTCCATACAATTCGACGAAAGCTCCGACGAATACAGATGTCTTTGCAACTGTTTTCACGTAAAAACAGGAGCATTCATAATCGGATGTGTGCACATTTTGATGATCCTCTTTTTCTTGATCCACAGTCTTTTTGTCTACTTTCAGCACGATGGAAGACTACAACAGGTAGGCGATTT
i caeJap4.Scaffold17739 I 601 I 37

a score=-10277.000000
s ce10.chrX             4579812 28 + 17718866 CTGC----ATAA-----CGTCGT--------TAACATATTCATTG
s cb4.chrX              9884649 29 + 21540570 AATT----ATAGTT---CTTTTC--------CATCCAAAATAT-C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1502850 32 -  4500979 CAAT----ACCACTAAacatttc--------tat-aaaaatatat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243175 33 +   386604 CAACTCGAATAAtc---aatttc--------tcagaaaaccaa-a
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2812669 37 +  4147112 CATt----ataatc---agttttttctgtcATCTCAACTTCAT-C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   70151 37 -   130595 I

a score=144584.000000
s ce10.chrX             4579840 202 + 17718866 TTTTCAGGCTCGTGGTGTCAAGGAAAACTACGTCTTTGGTTCTTTTCTTGCGGAAATGATCGGACTCGGTCTGGGTATTTTCGCGGTTTTCCTACTTTTTGTCGCTTTGTCCCGAAATTCGGCTCTGCTCGTCGTACCACATCTTGTTATGCAGGTACTAGTCTTTT---TTCCATATGTTTTTACTG--------------AAGGGAGAATGGAAAAA
s cb4.chrX              9884678 188 + 21540570 ATTTTAGGCTCGAGGTGTGAAAGAAAACTATGTGTTCGGCTCCTTCCTCGCTGAGATGATCGGTCTCGGTTTGGGTATTTTTGCagtcttccttctttttgttgCATTATCTCGAAACTCAGCTCTACTGGTGGTACCACATCTTGTTATGCAGGTATGtgttgttt---ttt------ggttttttg----------------------tttggaGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1502882 199 -  4500979 atttcaggCACGAGGCGTAAAAGAAAACTATGTGTTCGGCTCATTTCTCGCTGAAATGATTGGACTAGGATTGGGTATATTTGCAGTTTTCCTCCTCTTCGTCGCATTGTCTCGAAACTCGGCATTACTCGTCGTACCACATCTTGTTATGCAGGTACGAGTTGCTT---TTT------GTTTTGCag---aag--------aagtgaaatccagaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243208 201 +   386604 attccAGGCACGTGGAGT-AAAGAAAACTATGTATTCGGATCATTCCTTGCTGAAATGATTGGATTGGGACTCGGTATCCTTGCagtttttctcctttttgtGGCATTATCTCGGAATTCTGCTCTTCTTGTCGTACCACATCTTGTTATGCAGGTACgagttgttt---ttg------ttttttttgcgaaCG--------GAACGGGACCAGACAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2812706 209 +  4147112 ATTTCAGGCTCGTGGAGTGAAAGAAAACTATGTGTTCGGTTCATTTCTCGCCGAAATGATCGGTCTCGGTTTGGGTATTTTTGCGGTTTTCCTTTTATTTGTGGCATTGTCTCGCAACTCGGCCCTTTTAGTCGTACCACATCTTGTTATGCAGGTACgagttgttt---tca-------gttttttgcacatgttttccaaaaagacgactcaacaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   70188 208 -   130595 attCTAGGCTCGAGGAGTGAAAGAAAACTATGTTTTTGGAAGTTTTCTAGCTGAAATGGTTGGCCTCGGGCTCGGCATTTTCGCCGTTTTTCTTCTCTTCGTCGCATTGTCTCGAAACTCGGCGTTACTGGTTATACCACATCTTGTTATGCAAGttcgttttgttttgcttc------ttttttttg----tggttgcagaaaaaaagacgaaaaaa-
i caeJap4.Scaffold17739 I 37 I 23

a score=-8667.000000
s ce10.chrX             4580042 24 + 17718866 CTG-------------------------AGGC----AGTCCCTCAAAATCTAA
s cb4.chrX              9884866 26 + 21540570 ---------------AAAACACCT------------Agtcccaaaaaatccaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1503081 46 -  4500979 acc-----agaaaagagaacatttttcaaaaaagaaaatccc--aaaatctAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243409 38 +   386604 ACA-----GGATAAGTAATTACGTTTCAAAGC----CTTT------AATCTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2812915 47 +  4147112 aaatgcagggaaaaagaaatatggttgaattt----ttttcc--ggcaTCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   70396 23 -   130595 I

a score=133594.000000
s ce10.chrX             4580066 199 + 17718866 TTTGCAGTGGAAAGA-------ATACAGTTCAAAA---CGAAATTTGTATC--GGTTTTAATTTTAGGTCATCGCAATTCTATGCTTCATCGTCGTATTAGTATGTGGAACAATAGCATTGTGCACTGATTCAGCAGTTTTCTACCGATTAATCAATGCAGCGCCTTTTATGGAACACCCGAATAACAACACAGTGGCTCTTGATACTGGT
s cb4.chrX              9884892 202 + 21540570 tttgtATGCCAGtcg-g-----gctcattttgaaaa--tggaagcTC-ATCCGCTCTCTAATTTCAGGTTATTGCCATTCTCTGCTTCATTTTGGTGTTGGTTAGTGGAACGATAGCATTGTGCACGGATTCAGCGGTTTTCTATCGACTAATAAACGCGGCACCGTTCATGGAACATCCCAATAATAACACAGTGGCTTTGGATACCGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1503127 207 -  4500979 TTTGTACACTAGAAG-GGGGAAGCTTGTTGTGAGAGATTGGTAGCTC-ATC--TTCACCAATTTCAGGTTATTGCCATTCTCTGCTTCATTTTGGTATTGGTTAGTGGAACGATAGCTTTGTGTACGGATTCAGCAGTCTTCTACCGATTGATTAATGCAGCACCGTTTATGGAACATCCGAATAACAACACTGTTGCATTGGATACTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243447 194 +   386604 TTCGCTGGCTAAAGACAGgcaaatattttcgaaaa---------------t--tcactCCCTTTCAGGTTATTGCAATCCTCTGCTTCATTCTAGTGCTGGTTAGTGGAACAATTGCTCTGTGCACTGATTCAGCTGTCTTCTACCGGTTGATTAATGCGGCACCGTTTATGGAACATCCAAATAACAACACTGTTGCTTTGGACACTGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2812962 207 +  4147112 TTTGCAGatggaaca-agaaaaacatttttcggaagatATCTATTTG-ATT--ATATCTCATTTTAGGTTATTGCCATCCTCTGCTTTGTTCTGGTTTTGGTTAGTGGAACGATAGCTCTGTGCACGGATTCAGCTGTTTTCTACCGTTTGATAAATGCAGCACCGTTTATGGAACATCCTAATAATAATACAGTTGCATTGGACACTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   70419 196 -   130595 tttgcaagaagaaaa-aaacgagt---ttttcaaa---cgaaaaata-aca--ttt-----ttacaGGTTATTGCAATTCTCTGCTTTATTCTGCTACTTGTCAGTGGGACAATCGCATTGTGCACTGATTCCGCAGTTTTTTATCGACTAATAAATGCAGCACCATTTATGGAGCATCCAAATAACAACACAGTTGCTTTGGACACTGGT
i caeJap4.Scaffold17739 I 23 I 115

a score=2517.000000
s ce10.chrX             4580265 4 + 17718866 TTGT
s cb4.chrX              9885094 4 + 21540570 TAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1503334 4 -  4500979 TGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243641 4 +   386604 TAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2813169 4 +  4147112 TAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   70615 115 -   130595 I

a score=-2569.000000
s ce10.chrX             4580269 11 + 17718866 TTTATAG---AAGT
s cb4.chrX              9885098  7 + 21540570 TTT-------AAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1503338 12 -  4500979 GTTTAAT--AAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2813173 11 +  4147112 ---GAactggaaat
i caePb3.Scfld02_0      C 0 I 240
e caeJap4.Scaffold17739   70615 115 -   130595 I
e caeSp111.Scaffold622   243645  0 +   386604 C

a score=-469.000000
s ce10.chrX             4580280 3 + 17718866 TTT-
s cb4.chrX              9885105 3 + 21540570 TAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1503350 4 -  4500979 TATT
i caeRem4.Crem_Contig0  C 0 I 71
e caePb3.Scfld02_0      2813184 240 +  4147112 I
e caeJap4.Scaffold17739   70615 115 -   130595 I
e caeSp111.Scaffold622   243645 0 +   386604 C

a score=-2291.000000
s ce10.chrX             4580283 275 + 17718866 TCCCAACATTTAGCGTACCACTAAATACATAAGTATTAGtata--taactatatatatatatatatatatataactagtatataagtatataACTACACAAGTATTTAAAAATGCCAAG-----AAACACAAAAAA------CTTAACGCACAACAAACCAAAAAAAAAAATGAATTTTTGCATTTTCCTGTATAGACTAAAAAAATAGTTGACCAACATTCCGCAAAAATGGTAGTTAATTTTGTAGAGTTGCCAAAAGTAGTTACCGCCCTACAAAAAATAGGATC
s cb4.chrX              9885108 215 + 21540570 ACACACCG--------ATGGCtcgatatttgaatttccggaaaattgaACACCTGTGAATATACAaacacata-----tttttcagttcat--cttcgttcattttgaccaatttcaggggtataaatacaaaaaagaaggggagggtgtaaaacagacctagattgaaaa-----ctttgtatt-------------------------------------cacagaatttttagaaaactc-----agATTTCACAGCTATTTTCC-----------AACGGGCTC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2813184 240 +  4147112 I
e caeJap4.Scaffold17739   70615 115 -   130595 I
e caeSp111.Scaffold622   243645   0 +   386604 C
e caeRem4.Crem_Contig0  1503354  71 -  4500979 I

a score=-22911.000000
s ce10.chrX             4580558 374 + 17718866 AAGTATAAGAATATCCCCTGTAGAAAAGTTTCAAACCCCCCCCCCCATCCAAATGATGGGCAAATTCCTTTTTTAATTTTGGGGATGTTATATTT--GCTGATATTATTGTTTGCAAAAACACAA-------------AAAAATTTCA-AAAATTCAAAACTCGAAAAATTGC---------TAAAACA-GCTTGGCTAATACCTTGACGTGTTCTGCGCTAAATTTTTTTTTTGATCTGTAGACAATC---------ATGATATAATAATGACGATAAGTATTAATTCAAAAATCACAAGTCAGAA------AATTTCCACAAC------AAAACGTGTTTGTAGCTTTCTTTTGACTAATTAAGGCGCTTAAAG-------CGGTCATAAAAATAA-------TAATTGCAGTCCTTTGGATATCTG---AATAAC-------------
s cb4.chrX              9885323 224 + 21540570 ---GAAAAAGATGTCT-------------TTCAGAG-------------------------------------------------------------ATTGAC-----------AAATAACTCGAAGCCT--------AGTAATTATGAAAAACTCTATGAATGCCAAGTTTT---------TAAtccaggtctgttttacacc------------gtTTTAAAT---------------------------------GTTTTACACC----GTCTGAAATGTGGATCAAAAA----CTAGACAGGC------GAGCGCCAGAatcc----taaaaatggtca--------------------aagtgaccgaaaa-------------tcaactgaa-------aaat---atttttttgtaaatcat---ATTGGC-------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2813424 387 +  4147112 AAGATTAAGGGTGTCTACTCTA-------TTTACAGCCTTTCCTTCGCTCACATGAC------ATTCTGCTTCCGAC-----GAATAAAATACTTGTATTGACG----TGCTTGAAATAAATAAGAGggtaaagaaaaaataattgtg-----ctgtataatttcaaaatagtcATAGAGCCCATtgtatgactttttgaaacct----gTTGCGAGTTTCAAATCTAAAT----ATCTGAGGATTGTTAGTGAGCTGGTTATTCGGT----GTAACAATAACGGGTCGGAAATACTCTAATCTGACTTGAAAGAGCATCACAGAccaatgaaaaactgat----------------------acaccactgaaaaattgatacacttgtgaaattagtttttgttaAT---CATCATTTATTAATCACTAGAATTGCATTTCTAACAAAT
i caePb3.Scfld02_0      I 240 I 3
e caeJap4.Scaffold17739   70615 115 -   130595 I
e caeSp111.Scaffold622   243645   0 +   386604 C
e caeRem4.Crem_Contig0  1503354  71 -  4500979 I

a score=-2343.000000
s ce10.chrX             4580932 7 + 17718866 TTTCCCG--
s cb4.chrX              9885547 7 + 21540570 CGATCCA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   243645 7 +   386604 --AATTACT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2813814 7 +  4147112 --ATCTATG
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17739   70615 115 -   130595 I
e caeRem4.Crem_Contig0  1503354 71 -  4500979 I

a score=-417.000000
s ce10.chrX             4580939  5 + 17718866 -------TAAAA
s caeRem4.Crem_Contig0  1503425  5 -  4500979 -------taaaa
i caeRem4.Crem_Contig0  I 71 C 0
s caeSp111.Scaffold622   243652 11 +   386604 Cgga-acaagaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2813821 12 +  4147112 TGGATACAAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   70615 115 -   130595 I
e cb4.chrX              9885554  0 + 21540570 C

a score=142742.000000
s ce10.chrX             4580944 620 + 17718866  
s cb4.chrX              9885554 560 + 21540570  
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0  1503430 600 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   243663 595 +   386604  
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0      2813833 592 +  4147112  
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17739   70730 788 -   130595  
i caeJap4.Scaffold17739 I 115 C 0

a score=-4210.000000
s ce10.chrX             4581564 26 + 17718866 TTCAACTTTT---TTTTTATCATA---ACACA
s caeRem4.Crem_Contig0  1504030 29 -  4500979 TTTAAATGTC---Ttgaatttattcgaaaaca
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622   244262 28 +   386604 ttcagatttcttattataaaaatt----aata
i caeSp111.Scaffold622  I 4 I 5
s caePb3.Scfld02_0      2814432 30 +  4147112 ttcaaaattcat-ttgtaaatgtg-gaaaaaa
i caePb3.Scfld02_0      I 7 I 5
s caeJap4.Scaffold17739   71518 24 -   130595 ttttaattta---atttaattatc----cat-
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9886114 47 + 21540570 I

a score=278040.000000
s ce10.chrX             4581590 560 + 17718866  
s cb4.chrX              9886161 567 + 21540570  
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0  1504068 586 -  4500979  
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622   244295 569 +   386604  
i caeSp111.Scaffold622  I 5 I 35
s caePb3.Scfld02_0      2814467 575 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17739   71542 584 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=2296.000000
s ce10.chrX             4582150 3 + 17718866 GAA
s cb4.chrX              9886728 3 + 21540570 gaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1504654 3 -  4500979 AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2815042 3 +  4147112 gaa
i caePb3.Scfld02_0      C 0 I 110
s caeJap4.Scaffold17739   72126 3 -   130595 GAA
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   244864 35 +   386604 I

a score=546.000000
s ce10.chrX             4582153 1 + 17718866 A
s cb4.chrX              9886731 1 + 21540570 a
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig0  1504657 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 37
s caeJap4.Scaffold17739   72129 1 -   130595 A
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e caeSp111.Scaffold622   244864 35 +   386604 I

a score=288.000000
s ce10.chrX             4582154 8 + 17718866 TTAACATG
s caeJap4.Scaffold17739   72130 8 -   130595 CAAGCATG
i caeJap4.Scaffold17739 C 0 I 31
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e cb4.chrX              9886732 41 + 21540570 I
e caeSp111.Scaffold622   244864 35 +   386604 I
e caeRem4.Crem_Contig0  1504658 37 -  4500979 I

a score=0.000000
s ce10.chrX             4582162 738 + 17718866  
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e caeJap4.Scaffold17739   72138  31 -   130595 I
e cb4.chrX              9886732  41 + 21540570 I
e caeSp111.Scaffold622   244864  35 +   386604 I
e caeRem4.Crem_Contig0  1504658  37 -  4500979 I

a score=91.000000
s ce10.chrX             4582900 1 + 17718866 T
s caeJap4.Scaffold17739   72169 1 -   130595 T
i caeJap4.Scaffold17739 I 31 C 0
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e cb4.chrX              9886732 41 + 21540570 I
e caeSp111.Scaffold622   244864 35 +   386604 I
e caeRem4.Crem_Contig0  1504658 37 -  4500979 I

a score=273.000000
s ce10.chrX             4582901 1 + 17718866 A
s caeSp111.Scaffold622   244899 1 +   386604 A
i caeSp111.Scaffold622  I 35 C 0
s caeJap4.Scaffold17739   72170 1 -   130595 A
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e cb4.chrX              9886732 41 + 21540570 I
e caeRem4.Crem_Contig0  1504658 37 -  4500979 I

a score=-796.000000
s ce10.chrX             4582902 2 + 17718866 -AA
s cb4.chrX              9886773 2 + 21540570 -AG
i cb4.chrX              I 41 C 0
s caeSp111.Scaffold622   244900 2 +   386604 -AG
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   72171 2 -   130595 CA-
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815045 110 +  4147112 I
e caeRem4.Crem_Contig0  1504658 37 -  4500979 I

a score=910.000000
s ce10.chrX             4582904 1 + 17718866 T
s cb4.chrX              9886775 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1504695 1 -  4500979 t
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold622   244902 1 +   386604 T
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   72173 1 -   130595 T
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815045 110 +  4147112 I

a score=303561.000000
s ce10.chrX             4582905 595 + 17718866  
s cb4.chrX              9886776 644 + 21540570  
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig0  1504696 604 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   244903 587 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2815155 602 +  4147112  
i caePb3.Scfld02_0      I 110 C 0
s caeJap4.Scaffold17739   72174 610 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=142339.000000
s ce10.chrX             4583500 222 + 17718866 AGTACATACAACTGGATAAGTCGGCTCAAAAACTGTAGTTTGAAGCTCCTGGAAGAGACTTGCTGCTTCTGCCCCACATTTTTCTAAAATT-CAATAGCCTA--ATTTAATCAATCTATAAAAT---AAAAATTACGGTCAATATCTTTCATTGTACAAGTATTTTGTTCAGATATCCATGTACGCATCATGCAGATGAGA------CCACGAGAATTGCACTCTTTTCTGAAA
s cb4.chrX              9887638 226 + 21540570 ACTGCAGACTACTGGATAGGATGGCTCAAATACTGTCGCTTGAAGCTCTTGGAACAATCCTGCCGCATCGGCACcacacttttctgaaatt-caaaagtc----atCGCATCTCCCAGTAGTTC---CAATCTTACGGTCTATATCGATCATTGTGCAAATATTTTGTTCTGAAATCCAAGTTCGCATCATGCAGATAAAATCGGAGCCTCTCGAGTTGCACTCTTGTCTGGAA
i cb4.chrX              I 218 C 0
s caeRem4.Crem_Contig0  1505300 225 -  4500979 AGTACACACAACAGGATAGGATGGCTCAAATACAGTGGCTTGTAATTCTTGGAACACACCAGCAGCTTCAGCTCCACACTTTTCTGTAACTATATCAGTCTAATATTGC-TCTTAAAATA--------AAACCCACGGTCTATATCTTTCAAAGTGCAAGTATTCTGTTCAGATATCCATGTTCGCATCATACAAATAAAATCAGATCCCCGTGAATTGCATTCTTGTCTGGAA
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold622   245490 225 +   386604 ATTGCACACAACTGGATAAGATGGTTCGAATACGGTTGCTTGTAACTCTTGGAACAACCCAGCAGCTTCTGCGCcgcatttttctagaaga-aattcatat---ttttagtGTCAAATCAATTT-----GGATTACGGTCTATGTCGTTCAAAGTGCATGTGTTCTGTTCAGATATCCATGTTCGCATCATACAGATGAAATCAGATCCACGAGAATTACACTCTTTcctaaaa
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0      2815757 229 +  4147112 ATTGCAAACAACTGGATAAGAAGGCTCGAATACTGTAGACTGAAGCTCTTGGAAGAGTCCAGCGGCATCTGCTCCACATTTCTCTGTAAGC-AACAAGAATA--TTTGAATACAAACTCAGTTT--TCCAAGTTACGGTCAATATCTTTCATAGTGCATGTGTTTTGTTCAGATATCCATGTTCGCATCATACAGATAAAATCAGATCCTCGGGAATTACAttcttttctggaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   72784 231 -   130595 ATTGCACACAATTGGATAAGTAGGTTCGAAAACTTGCGCCTGGAATTCTTGGAAAAGGCCAGAAGCATCTGCTCCGCATTTTTCTACAA---CAACAATATCATATTTATTTTAAGAGAAATGCACATGCACTTGCCATTTATATCTTTCAATGTGCACGTGTTTTGCTCAGATATCCATGTTCTCATCATGCAAATGAAATCGGAGCCACGGGAATTGCATTCTTGTCTGTAA
i caeJap4.Scaffold17739 C 0 C 0

a score=-324.000000
s ce10.chrX             4583722 1 + 17718866 T
s cb4.chrX              9887864 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2815986 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   73015 1 -   130595 T
i caeJap4.Scaffold17739 C 0 I 16
e caeSp111.Scaffold622   245715 10 +   386604 I
e caeRem4.Crem_Contig0  1505525 17 -  4500979 I

a score=546.000000
s ce10.chrX             4583723 2 + 17718866 AT
s cb4.chrX              9887865 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2815987 2 +  4147112 at
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17739   73016 16 -   130595 I
e caeSp111.Scaffold622   245715 10 +   386604 I
e caeRem4.Crem_Contig0  1505525 17 -  4500979 I

a score=1.000000
s ce10.chrX             4583725 10 + 17718866 GTTTAACTCA
s cb4.chrX              9887867 10 + 21540570 CCCTCATTTA
i cb4.chrX              C 0 I 14
e caePb3.Scfld02_0      2815989 31 +  4147112 I
e caeJap4.Scaffold17739   73016 16 -   130595 I
e caeSp111.Scaffold622   245715 10 +   386604 I
e caeRem4.Crem_Contig0  1505525 17 -  4500979 I

a score=0.000000
s ce10.chrX             4583735 643 + 17718866  
e caePb3.Scfld02_0      2815989  31 +  4147112 I
e caeJap4.Scaffold17739   73016  16 -   130595 I
e cb4.chrX              9887877  14 + 21540570 I
e caeSp111.Scaffold622   245715  10 +   386604 I
e caeRem4.Crem_Contig0  1505525  17 -  4500979 I

a score=251.000000
s ce10.chrX             4584378 4 + 17718866 ACTG
s caeJap4.Scaffold17739   73032 4 -   130595 ACTA
i caeJap4.Scaffold17739 I 16 C 0
e caePb3.Scfld02_0      2815989 31 +  4147112 I
e cb4.chrX              9887877 14 + 21540570 I
e caeSp111.Scaffold622   245715 10 +   386604 I
e caeRem4.Crem_Contig0  1505525 17 -  4500979 I

a score=1264.000000
s ce10.chrX             4584382 6 + 17718866 ATGTGT
s caeSp111.Scaffold622   245725 6 +   386604 atgtGT
i caeSp111.Scaffold622  I 10 C 0
s caeJap4.Scaffold17739   73036 6 -   130595 atgttt
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815989 31 +  4147112 I
e cb4.chrX              9887877 14 + 21540570 I
e caeRem4.Crem_Contig0  1505525 17 -  4500979 I

a score=-319.000000
s ce10.chrX             4584388 7 + 17718866 TGAAAAG
s caeRem4.Crem_Contig0  1505542 7 -  4500979 tgaaaat
i caeRem4.Crem_Contig0  I 17 I 4
s caeSp111.Scaffold622   245731 7 +   386604 Taagaac
i caeSp111.Scaffold622  C 0 I 1
s caeJap4.Scaffold17739   73042 2 -   130595 tg-----
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2815989 31 +  4147112 I
e cb4.chrX              9887877 14 + 21540570 I

a score=235351.000000
s ce10.chrX             4584395 326 + 17718866 TTA----AAACCTTACTTGCATGATATAACCTGTTTTCCATATTCATTATCATCCAATTGGCATCCTGTGCTCGCTGGTAGAGAAAGGACTCCGGATATACATTTTTGATGCTCAATGACCAAGCTGAA-----------AAAGTGTAGCTGATGTTA-----TGAGGTTTTCTCCATTCATTC---GAAATCCCT---TTCCC-----TGATC---TTTACCTA-A--TGGACACCAATTG-AAAATT-GCGGAAGACATTTTGCACATTATTAAGCAAACACGTTTCGAATACCGTGTGCTTATTTGAGCTGACACCTCTCAAGTGCTTGCGTTCG-CACCTATATCTACT---------GTTTTCA-----------TAATGG
s cb4.chrX              9887891 358 + 21540570 ttt----aaagcTTACTTGCATGACAAAACTTGTTTTCCGTAGTCATTATCATCCATCTGACATCCAGTGGTTGCTGGTAATGAGAGCACGCCGGATATACATTTTTGGTGTTCGATGACTGATCTGAAGAAAGACAAA-ACACTGATTGTGGTGATGATATTAAAAGGT---CATATTTATTC---AATATCCTCTTATTTTCAATCTTCACT---TTTACCTAGA--TAGACACCAATTG-AAAATAGGCGGAAGGTAATTT-CACATTATTAAGTAAACACGTTTCGAATACAGTGTGCTTATTTGAATTGACACCTCTCAAGTGCTTGCGTTTGCCTGCT-TTTCGAAT---------CTTTTCCCACACATTCGTTCATGG
i cb4.chrX              I 14 I 1
s caeRem4.Crem_Contig0  1505553 337 -  4500979 ata----GAAGCTAACTTGCAAGATATCACTTGTTGTCCATATTCATTATCGTCTAACTGACATCCAGTACTTGCTGGTAAAGAAAGCACCCCGGATATACATTTCTGATGCTCGATGACCaacctgaaaatggaaaaacagaTTGATCTTGATGTTG-----AAAAGct---catatttattt---tatatccCC----TCTCAATCTTTACT---TTTACCTAGA--TAGACACCAATTG-AAAATA-GCGGAAGACAATTT-CACATTATTAAGTAAACACAATCCGAATACAGTGTGCTTATTTGAATTGACACCTCTCAAGTGCTTGCGTTCG-CTGCA-TCTTCATT---------CCTTTCA-----------TGATGG
i caeRem4.Crem_Contig0  I 4 I 1
s caeSp111.Scaffold622   245739 340 +   386604 tgaaaatgaaacaaactTGCAAGATAAAACTTGTTTCCCATATTCATTGTTATCCAATTGACATCCAGTACTTGCCGGTAAAGAGAGAACTCCGGATATACATTTCTGATGTTCGATGACCGacctgaat-gaaaaaaacagaatgatCTAGATGTTA-----AAAT-CT---TATATTTATTC---TATATCCCC---CTTCCAATCTTTACT---TTTACCTAGA--TAGACACCAATTG-AAAATA-GCGGAAGACATTTT-CACATTATTAAGTAAACACAGTTTGAATACCGTGTGCTTATTTGAATTGACACCTCTCAAGTGCTTGCGTTCG-CTGCT-TCTTCATT---------CCGTTCA-----------TGATGG
i caeSp111.Scaffold622  I 1 I 72
s caePb3.Scfld02_0      2816020 339 +  4147112 TCA----GAAACTCACTTGCAGGATAGAACTTGCTTTCCATAATCGTTATCATCCAATTGACATCCGGTAGTTGCTGGTAAGGAAAGCACTCCGGATATACACTTCTGATGTTCGATGACTGacctgaacaaaaaaaaacagattgatCTTGATGTTG-----AAATGCT---TATATTTATTC---TATATCCCC---CTCTCGATCTTTACT---TTTACCTAGA--TAGACACCAATTG-AAAATA-GCGGAAGACAATTT-CACATTATTAAGTAAACAAAGTTTGAATACCGTGTGCTTATTTGAATTGACACCTCTCAAGTGCTTGCGTTCG-CTGCT-TCTTTATT--------CCCGTTCA-----------TGATGG
i caePb3.Scfld02_0      I 31 I 2
s caeJap4.Scaffold17739   73044 328 -   130595 -ca----aaaactcACTTGCATGCTAAAACTTGTTGTCCATACTTATTGTCATCCAACTGACATCCCGCCGAGGCTGGCAAAGAGAGAACTCCTGATATGCACTTTTGATTCTCTAGCACCAATCTGAA-----------------------ATATTT-----ACAGTTA---CTTACTTATTCGTTTATATCCCT---TGTCCACTGTCTGCTTTCTTTACTTAGGCCCAGACTTTAAAAGTAAAGTA-GCGGATTACAATTT-CACGTTATTAAGCAAACA--GTTTGACCATG--GTGCATATTTGCGTTGACACCTCTCAAGTGCTTCCGTTCT-CATCT-CATCGATAcccccaccccccTTCA-----------TGATGG
i caeJap4.Scaffold17739 C 0 C 0

a score=330.000000
s ce10.chrX             4584721 3 + 17718866 AAC
s cb4.chrX              9888250 3 + 21540570 CAT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1505891 3 -  4500979 CAT
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0      2816361 3 +  4147112 CAT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17739   73372 3 -   130595 AAG
i caeJap4.Scaffold17739 C 0 I 39
e caeSp111.Scaffold622   246079 72 +   386604 I

a score=-3811.000000
s ce10.chrX             4584724 30 + 17718866 TTCCTCACC---------------------GATGAACAGAAGAA----CACATG-----------G
s cb4.chrX              9888253 49 + 21540570 TTCCTGACCCCCT------------ATAAAGTTGTTTTTGACCG----TTGATGCCAGGCGGCA-G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1505894 66 -  4500979 TTCCTGCCCcctcaaaacttttctaatGAAGTTGTTTTTGAGCGAGAAATGATGTCTGGCGCCGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2816364 54 +  4147112 TTCCTGATTTTAC----CTATTTTGagtgagttgtttttgaaaa----cagatgtTCGTTG----G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   73375 39 -   130595 I
e caeSp111.Scaffold622   246079 72 +   386604 I

a score=3356.000000
s ce10.chrX             4584754 9 + 17718866 CTGATAAGC
s cb4.chrX              9888302 9 + 21540570 CTAATTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1505960 9 -  4500979 CTAATTGGC
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2816418 9 +  4147112 CTAATTGGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   73414 9 -   130595 CTGTCAAAC
i caeJap4.Scaffold17739 I 39 C 0
e caeSp111.Scaffold622   246079 72 +   386604 I

a score=79033.000000
s ce10.chrX             4584763 233 + 17718866 CAAGTGCTAATTTTGTAG-AACATG-----------------------TGAGGAGGAGAACAAGACGCGAAAAACCGTTGAGCAAACGTTGCCGAACGCGAATTTTGTT------CGTAATTCGCGGGTCACGTAAA---TGCTTGG-----ACAATAAAAATAG----AAAGAAACAAAC-----------------ATTGATG------------AAAATGTGGTTTCAATGCACA-ACGGCCAATTGAAAGAG----TA--AGGATTTGG---GTCAGTTTCTCGGAGAAG--------------GTA-TTGTTTTGGTACAAGCT
s cb4.chrX              9888311 256 + 21540570 TTGTGGCTAATTTGGGAAGAACAGG-----------------------TGTT-AACCGAACAAGGCGCG-AAAACCGTTGAGCAAACGTTGCCGAAC---------AGT------CGTAATTCGCCAGTCACGTAAGC--TGCATGGGGCGaacaataaaaatagaaaaaaagagacaaac-----------------aACAAGA------------AACTGTTAGTTTCGATGGATACACAATTTATGAAAGGGCTCGATTGCAAAAGTCATTTTGTCCGTCTC-GGGGAGAAagaagttttgttttgtt-ttgtcttGGTGCGAACT
i cb4.chrX              C 0 I 673
s caeRem4.Crem_Contig0  1505970 226 -  4500979 CCACAGCTAATTTCGGAA-AACAGG-----------------------TGTT---CAGAACAA-GCGCG-AAAACTGTTGAGCAAACGTTGCCGAACGC--AGGTTGTT------CGTAATTCGCGGGTCACGTAAA---TGCTTAg-----acaacaaaaatag----aaagaaacaaaC-----------------AAGAGTG------------AAATAATGGTTTCAATGAACACAGAATTCAATTGAAGGT----TTGCAGGATTAGT----TCGGACTC-CGAGAAA---------------GTA-TTGTTTTAATACAAACT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   246151 224 +   386604 CCGCCGCTCATTTCGGAA-AACAGG-----------------------TGTT---AAGAACAG-GCGCT-CAAACCGTTGTGCAAACTGTGCCGAACGA--ATGTTATT------CCTAATTCGCGGGTCACGTAAA---TGCTTGg-----acaataaaaatag----aaagaaacaaac-----------------atgaatg------------aaaatgtggTTTCGATTGA-ACACAGTCAATTGAATGAG----TA--AGGATTAGG----AAAGTCTC-CGGAGATG--------------GTA-TTGTTTTGGGGGAAAAC
i caeSp111.Scaffold622  I 72 C 0
s caePb3.Scfld02_0      2816427 237 +  4147112 GCACTGCTAATTTCGGAA-AACAGG-----------------------TGTT---AAGAACAA-GCGCG-AAAACCGTTGTGCAAATGTTGCCGAACGC--AGGTTGTT------CGTAATTCGCGGGTCACGTAAA---TGgttga-----acaataaaaatag----aaagaaacaaac-----------------aagaatgtggtttcaatgaaaaatgggttttcaaTGAACACACAATCTATTGAATGAG----TT--AGGATTAAG----TCAGTCTC-CGGAGAAA--------------GTA-TTGTTTCGGTTCAAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   73423 257 -   130595 TGACTTCTTATTTTAGAA-AATAGAACCTGATTGGCGCGCTGTTAAGCTGTG---GAAAACAA---GGG-AAAACCGTTGTGCAAACTTTGCCGAACgc--ttgtaaataaataaagtaaTACAAGGGTCACGTAAACGAGGCCCAC-----AGTATCGAAATAG----ATTGAAACAAACAGTGTAAAttaaagaaaaggaaaa------------aaaacagggcTTAGAATGGTCAAAAGTCGATTCCATACA----AT--TCaattcaa----------tg-caaaaaag--------------GTGTTTGTTGT----------
i caeJap4.Scaffold17739 C 0 C 0

a score=-24099.000000
s ce10.chrX             4584996  72 + 17718866 CCGTGCACAGTTTGCACGA----ACAACAATGACTACATTCAT-------------------------------------AATGTGTGGGT----------TGTGAGTAAA-----AATCAAAATTAA
s caeRem4.Crem_Contig0  1506196 104 -  4500979 CTGAGCAACATGTACTCAATGGAATGACGTTTTCCTAGATAAACCAAAGGTCggaccaaaaaaaatttagcaa-------AAGCTATGACTTCCT---CAATGT--------------TTATAAGCCA
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold622   246375  76 +   386604 CC--CCACAATGTACCCAA-ACAATGACGTTGACCCAAT-----------------------------------------GGGTCTTGTTTGAGG---GCATATAGGTGCA-----AAGTGGAAGTTG
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0      2816664 116 +  4147112 ACGGGCACATTGTACTCAA---AATGACGTGGGCTGAATCCTA-CGAATgaaactttacaaaaaaatggatagagtaaaaaatttctggcCTAGC---GAATCTGGATTCA-----AACTTTGAGTAG
i caePb3.Scfld02_0      C 0 I 110
s caeJap4.Scaffold17739   73680  82 -   130595 --------------------------CCGTACACTAAGCCTAACCATACGAGATGCGACA--------------------ACTGTTTGGATTTGTTTCAAATGTTAgtaaagaaagaagaaaaaataa
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9888567 673 + 21540570 I

a score=141182.000000
s ce10.chrX             4585068 145 + 17718866 AACTTACTTCTGTCTCTTCAAACTGAACGGAGAACATAGATACATGATAGTTTTAGATACTTCGTTCAAAATTCTTTTCTGTTTATCATCTCCACACTCTCGAATTTTCTCTTGGAAACATGGAAGAGTAGATGAATATACTCTG
s cb4.chrX              9889240 145 + 21540570 AACTCACTTCTGTCTCTTCATGCTGAAAGGTGAACACAAATAcataattgtttttgaaacttcactCAATATCCTCTTCTGTTTATCATCTCCacattccagaattttctcttGGAAACATGGGAGAGTAGATGAGTACACCCTG
i cb4.chrX              I 673 I 44
s caeRem4.Crem_Contig0  1506330 145 -  4500979 GGCTTACTTTTGTCTCTTCATACTGAACGGTGAACAAAGATACATGATTGTTTTGGAGACTTCACTCAATATTCTTTTCTGCTTATCGTCACCAcattctcgaattttctctTGGAAACATGGAAGAGTAGAAGAATAGACTCTG
i caeRem4.Crem_Contig0  I 30 I 3
s caeSp111.Scaffold622   246461 145 +   386604 AACTTACTTCTGTCGTTTCATACTGAACGGGGAGCATAAGTAcataattgtttttgaaacttcattCAGTAtccttttctgtttttcatcaccacattctttgattttttcttggaaacaTGGAAGGGTTGAAGAATAAACTCTG
i caeSp111.Scaffold622  I 10 I 17
s caePb3.Scfld02_0      2816890 145 +  4147112 aacttacttctGTCGTTTCATACTGAATGGAGAGCAAAGATACATAATGGTCTTCGAAACTTCACTCAATATCCTCTTTTGTTTATCATCTCCACACTCCCTAATCTTTTCTTGGAAGCATGGAAGTGTAGACGAGTAAACTCTT
i caePb3.Scfld02_0      I 110 I 40
s caeJap4.Scaffold17739   73762 145 -   130595 aacctacTTCTGTCTTTGCATACTGAACGGAGAGCAAAGATAAATGATCGTTTTGGACACCTCATTCAGAATCCTCTTCTGTTTTTCATCACCACACTCTTTGATTTTGTCTTGAAAGCATGGGAGAGTTGCTGAGTAGActcta
i caeJap4.Scaffold17739 C 0 C 0

a score=-914.000000
s ce10.chrX             4585213 17 + 17718866 AAACATAAAATTCTCTT
s cb4.chrX              9889429 14 + 21540570 attca---TATTCGTGC
i cb4.chrX              I 44 C 0
s caeSp111.Scaffold622   246623 17 +   386604 ttaaaaactactctctc
i caeSp111.Scaffold622  I 17 C 0
s caeJap4.Scaffold17739   73907 14 -   130595 ---aaaaacattttcct
i caeJap4.Scaffold17739 C 0 I 19
e caePb3.Scfld02_0      2817035 40 +  4147112 I
e caeRem4.Crem_Contig0  1506475  3 -  4500979 I

a score=440.000000
s ce10.chrX             4585230 7 + 17718866 GTCTTTT
s cb4.chrX              9889443 7 + 21540570 CTCCAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1506478 6 -  4500979 -TCCAAC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   246640 7 +   386604 ttccttt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2817035 40 +  4147112 I
e caeJap4.Scaffold17739   73921 19 -   130595 I

a score=-2846.000000
s ce10.chrX             4585237 17 + 17718866 TGATCTCTGGATCTGGA----
s cb4.chrX              9889450 17 + 21540570 CGATAAGGTAACCAAGA----
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0  1506484  7 -  4500979 ----------ATCAGTA----
i caeRem4.Crem_Contig0  C 0 I 23
s caeJap4.Scaffold17739   73940 13 -   130595 --------TGATTTCTATTCG
i caeJap4.Scaffold17739 I 19 C 0
e caePb3.Scfld02_0      2817035 40 +  4147112 I
e caeSp111.Scaffold622   246647  0 +   386604 C

a score=261344.000000
s ce10.chrX             4585254 565 + 17718866  
s cb4.chrX              9889509 579 + 21540570  
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0  1506514 591 -  4500979  
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold622   246647 547 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2817075 554 +  4147112  
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17739   73953 526 -   130595  
i caeJap4.Scaffold17739 C 0 I 5342

a score=13330.000000
s ce10.chrX             4585819 137 + 17718866 ATAGAACTTTAG-----GGGTGATGAGACCGAAAAA------------------------ATGTT--CGG---------GCGCTATG---------------TTCAAGTT----TGGGA-AGTTGAAA----------TGTTTGACCTGTTC-AAATAAAG--CGATTGGAGGATACAGTTGTTGATCA----GTTTGGAGATCTATTTTTGAA
s cb4.chrX              9890088 172 + 21540570 -CGCGAGTTTAGATT--AGAAAGAACAACGGGAGATTCGAGGGGTCAGGGCTATTGATAGATGTTCGTG----------GCGCTCTC---------CAGAGCTCGTGGTT----TTTGAGGAAATGAACA--------TATTTATCTTGTTC-GAGGAGAGAATGATTAAATGATACAGTTGTCTG-------CGGTTGAAATCTATTTCGGGA
i cb4.chrX              C 0 I 4916
s caeRem4.Crem_Contig0  1507105 149 -  4500979 -CGCAATTTTAGATTTCGGAGGGATTAATTGGAAAT-----------------------GATGTC--TG----------GCGCTCTC---------CAGAGTTTGGAGTTGAGATTTGAAGATATGAACA--------TGTTTGTCTTGTTT-GGGAAGAG--TGATTGAATAATACAGCTGTTTATC-----CATTGAAAATCTATTTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   247194 174 +   386604 -TGT-------GATATCGGACGAAC--ATTGGACTG---------------------TAGTTCTC--TGAACAGCAAAGGCGCCTTCTCTCGGAACTTGAGTTGGAAGTT----TCTGA-GATCCAAACGGTCAATTCTATTTGTCTTGTTCAAAAGAGAC--TGATCAAGTGATCCAGATGTTTATCTGTCTAAATTGAAATCTATTTTGGGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2817629 172 +  4147112 -TGTGATTTTAGATATCGGAGGGAT-AATTGAAACG-----------------ATGTTGGGTGTT--TGAA--------GCGCTTTT-----GAACTTGagttggaagtt----tttga-aatgcgAACGGAAGATTTTATTTGTCTtgttc-aaagaaaa--tgattgagagATACAGTTGTTTATCAATCTGAGTAGATATCTATTTTGGGa
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17739   74479 5342 -   130595 I

a score=-1331.000000
s ce10.chrX             4585956 21 + 17718866 TTTGATTA-AAGAATCGAAAG-A
s caeRem4.Crem_Contig0  1507254 13 -  4500979 ---------GAGAATCGAAAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   247368 21 +   386604 TGTGATgagaacaaaataaaa--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2817802 21 +  4147112 tggaacaaaaataatggaaaa--
i caePb3.Scfld02_0      I 1 I 2870
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I

a score=-867.000000
s ce10.chrX             4585977 22 + 17718866 TAGCAAGATCTAT-GTTGAAGGA---
s caeRem4.Crem_Contig0  1507267 15 -  4500979 -----------TCAGTTGGAAAAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   247389 23 +   386604 atgtgaaatatatggttgaaaaa---
i caeSp111.Scaffold622  C 0 I 1009
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I

a score=1012.000000
s ce10.chrX             4585999 114 + 17718866 CCACTCAAA--------CTTTAAAATTTGAATCGTAACCATATTTTGATAAGAACA----AAGAGAAAAAGATTCAAACTTCGAACAAGAGTAATTGAAAACACGT------TGATATTTAATTTTGGACAC
s caeRem4.Crem_Contig0  1507282 132 -  4500979 CTACCGACGACATTGTTcgtcaaaacttgaaaaatgatatcaaTGAGGCAGGAAAACTTgcaaaagaaaacatttaaataTTGAATCCAGGTAATTCATAATAAGTATCTTGTGATATATGATGTGGTGcac
i caeRem4.Crem_Contig0  C 0 I 1939
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I
e caeSp111.Scaffold622   247412 1009 +   386604 I

a score=0.000000
s ce10.chrX             4586113 1378 + 17718866  
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I
e caeSp111.Scaffold622   247412 1009 +   386604 I
e caeRem4.Crem_Contig0  1507414 1939 -  4500979 I

a score=218.000000
s ce10.chrX             4587491 61 + 17718866 TTTTTCCAGATGGCTCATCAAACGAACTTTCCTTGCTAGAAA-ACGAGGAGTTGTGGTTTGC
s caeSp111.Scaffold622   248421 61 +   386604 TCTCTACAGAAGACTCACCATTCTCACTATCCGAGCTCGTCATAATCGCAATCGTG-TCAAC
i caeSp111.Scaffold622  I 1009 C 0
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I
e caeRem4.Crem_Contig0  1507414 1939 -  4500979 I

a score=5680.000000
s ce10.chrX             4587552 165 + 17718866 TACGTAATGTTTCCAGGTCAAACTTTTTTGAACACGGCAGCGAGTACAATCCGATATGTCACATTTATGATTAAATGTTTCCTTATTTTAATAGTAAGTTTTTGATACGCACATCTTGGTATGCTTTTCAAACACATTTTTTCAATTTTATCAGCAT---ACGCACAA
s caeRem4.Crem_Contig0  1509353 142 -  4500979 TACGTCGTCGCTCCAGGAAACGCTTTTGCTGAAAGCACAGCTCAGGCTTTCCGTTGTTTTGCTTTCTTCATCGAGTTCTTCTTCATTGTCCTCGTAAG-----------------TTGGAATaat-----attgtgattttttg----tgttcgcATATCATGAACAA
i caeRem4.Crem_Contig0  I 1939 C 0
s caeSp111.Scaffold622   248482 126 +   386604 TATGTCATGTCTCCAGGACAAGCTATTGCTGATACCACCGCCCAAACCTTCCGTTGTTTTGCATTTGCCGTTGAGTTCATCATGATTGTCCTTGTGAG-----------------TCAGAA---------ATTGCACTCTTCTA----------------ATCAACAA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9890260 4916 + 21540570 I

a score=27166.000000
s ce10.chrX             4587717 189 + 17718866 ACT-TTTTTTCAGTATTCTTGTATCATTGTCTACCTGTCCGACAACCCTGCTAACAGAAACACCGTTGCAGTGTACACATTGATGTAGG-GCAT---------AAAT----------GAAATGATTTTTTTTTCATTTTTAATAA-TTTTCAGTTTTGTTCTAATCCATTGTTGGGAGCAATTCTTGTATGGCTTCTACAAAGTCGGCGTT
s cb4.chrX              9895176 188 + 21540570 ACT-TATTTTCAGTACTCTCGCTTCATCGCTCAATTCTGCACCACAACTGAAACTCGTAACACCGTTGCAGCATACACTGTGGTGTAAGAGAAA---CAatagaaacattttc----aaagtaat--------catttt-------ttttcagcttcacaTTCCTGCACTCCTGGGAGCACCTCCTTTACGGAATCTACGGATTCGACATT
i cb4.chrX              I 4916 I 252
s caeRem4.Crem_Contig0  1509495 188 -  4500979 ------TTTCCAGTACTCCCGCGTAATCGCCTACATGTGTGAAACACCAGCCAGCCGCAACATTGTTTCTGCATACACCGTAGTGTAAGAAAAC---------AAATACTTTAtgtgaaaataat--------aatatttatcaaattttcagttttctcatcaTTCATGCCTGGGAACATCTTCTCGCTGGAATCAACGCAAACCGCGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   248608 191 +   386604 ACTCCATTTTCAGTATTCGCGTGTCATCTCCTACATGTGTCAGACCCCGGCCGCTCGTAACATTATTGCAGCGTACACTGTGGTGTAAGCACAtacaaaatagaaataaat------gaGACAAT-------ACgtatt-------atttcagttttgttcTCATCCATTCCTGGGAGCATCTTTTGTATGGAATCTATGGAGAACGCACT
i caeSp111.Scaffold622  C 0 I 8
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I

a score=-2523.000000
s ce10.chrX             4587906 33 + 17718866 TCGTTGATTAGAACACTTTATG--------------TTGTCAAAATT
s caeRem4.Crem_Contig0  1509683 14 -  4500979 --------ACTAACAATCTGTG-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   248807 46 +   386604 CCGTTGA-ACAATCAACCTACCACAAACACATcccctttttccaatt
i caeSp111.Scaffold622  I 8 I 38
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9895364 252 + 21540570 I

a score=0.000000
s ce10.chrX             4587939 9 + 17718866 GAAATTGAA
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e cb4.chrX              9895364 252 + 21540570 I
e caeSp111.Scaffold622   248853 38 +   386604 I
e caeRem4.Crem_Contig0  1509697 0 -  4500979 C

a score=374.000000
s ce10.chrX             4587948 27 + 17718866 TCCAAAGTTGTCTTATAATTTGCATG----C
s cb4.chrX              9895616 23 + 21540570 tcctaattt--------attttaatgtgttc
i cb4.chrX              I 252 C 0
s caeRem4.Crem_Contig0  1509697 27 -  4500979 ----AATTTGTTACAcgatttcaatgatttc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e caeSp111.Scaffold622   248853 38 +   386604 I

a score=-20504.000000
s ce10.chrX             4587975 101 + 17718866 ----------CATGTTTTATTTCTATTCTCAATTCCATAATAAATG-----------CGCTTTGTTTTT-----TTCTTGCCTCCTTCAACGATGTGTTCCTTCCTC------------------------------CTCCAACACGACACACCAAC-------------
s cb4.chrX              9895639  79 + 21540570 ctaattt-ttcatttcttctcacttttctt-------------------------------ttgctttt---tgcccttgagaccctc----ttgtttctcttgtct---------------------------------------------gtgtgttgt-------gt
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0  1509724 159 -  4500979 ttacttt-tttttcttattccactgtacttca--tgaaaaaaatgatgcaTACCCCCCAAATTGTTTTTGTATTCTCTCGACTCTCGT----CTGTATTCCTTATCCCCTCCCAACAATCTCCTCTTTCCTCCATTCCCCCTCCTTGAGAA-CCATATTATACA---AAT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622   248891 107 +   386604 -TATTCTGTGTATATACTCTTGATATCTCTGG--CCGAAATAGTAG-----------CAACCTGTCTCT------------CTCCCCC----TTCTTTCTCATGTAG--------------------------------ATAACATAAGAAGACGTCTCGTTCACCGAG-
i caeSp111.Scaffold622  I 38 C 0
e caePb3.Scfld02_0      2817823 2870 +  4147112 I
e caeJap4.Scaffold17739   74479 5342 -   130595 I

a score=-8002.000000
s ce10.chrX             4588076 164 + 17718866 TGCGCACAG----CACG-----------CAAAACGCGCCAACCGTTACTT--TGCGCACTTGTTGACGTTCAAATTAATTTATCGTGATTTGTCATTTTTACTGTCTTTTT---CT---------CGTTTTTTACAATGTTTTTATACAAGTTTCAGTTAACCG-------CATAGTTAAAAATGATTTCTTATAATGTT----------------
s cb4.chrX              9895725 182 + 21540570 CGTGCACTAGACGCACGTCAACTACCCACATTTTGCGTCAACCGCCCCGG-TTGACCCTTTCTCGGTTTTCAGTGCGATTT-GCAT-ATTTGTCATATTTATTGTCATGTTGGAGc---------agttttttctcaagttttgt---taattttactcaa----------tttttttataa---cgTTCCCGTGGTATTTAAGCT---TGTT---
i cb4.chrX              I 7 I 10
s caeRem4.Crem_Contig0  1509890 173 -  4500979 TGTGCACAGCAAACGCGCACGCTCTCTCTCTTTTGCGTCAGTAGTCTCCA--TGcgcttttttcgttttttgaattaatttggcataatttctcattttgattagagtttt---gt---------agttgtttcctgtatttttg---caatttttcgta-----------------taaaa---acttagattaaaatcaaaatc---tgtT---
i caeRem4.Crem_Contig0  I 7 I 51
s caeSp111.Scaffold622   248998 195 +   386604 CGCACACACCGCACACG-----------CAAAACGCGTCAATATCTTTTCTTGGCGTATTGCTCGACATTTGAATATATTTAGTGTTATTTGTCGTTTTGGCTGCCGTGTTGGAGCCATAGCCCTTATTTattgtctttttttaaatataatttttattaaatgAAACCT-TATTCTTAA------TTTCTATGAATTCCTAACTC---TATTGAc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2820693 194 +  4147112 TGCGCACAT----CACG-----------CGTTATGCGCCTTGCCTCCCACCTTGCGCACATCTTGATGTTTGAATAATTTTAGTGTAATTTGCTGTCTTTTATGCCATGTTGGAGt----gttttcattgctttttatgttttattcacagttattttgaataaaaacctGTATAGTTAGCg---ttttttagtgattttttgttcagaaactCCT
i caePb3.Scfld02_0      I 2870 C 0
e caeJap4.Scaffold17739   74479 5342 -   130595 I

a score=-3188.000000
s ce10.chrX             4588240 25 + 17718866 ACGCGAAAATTAATTCAAATAATTT----------
s cb4.chrX              9895917 28 + 21540570 -----AAGACCTAAAC--ATAACTTTTAAACTATT
i cb4.chrX              I 10 C 0
s caeSp111.Scaffold622   249193 19 +   386604 --------atgaaata--ataattttttc------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2820887 19 +  4147112 --------ATCAAACC--GTTATTTATGC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   74479 5342 -   130595 I
e caeRem4.Crem_Contig0  1510063 51 -  4500979 I

a score=-4718.000000
s ce10.chrX             4588265 18 + 17718866 -----------------TCGAAAAACATT-CTATAG
s cb4.chrX              9895945 21 + 21540570 ---------------AAAAACACGCCACCACCAAAt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1510114 26 -  4500979 ----------TAGGAAAACGCACGTCACCCACATTG
i caeRem4.Crem_Contig0  I 51 C 0
s caeSp111.Scaffold622   249212 35 +   386604 tcacaagaaaatgaaaaatgcagaCCATC-GCGTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2820906 35 +  4147112 ccgaaaaaatgggaagaatgcAAATAACT-GCGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   74479 5342 -   130595 I

a score=78916.000000
s ce10.chrX             4588283 261 + 17718866 TTTTATCTCTTTGTTAACAATAGCAAAGTTTG-------------ATGAGTAAA--CACGTGTTCAGC-----GTCATTCAC--CTTGTTTTCATTTCT------TCTCAAAACTTTTATTTCTCCTAGGTTTTCCTTAGTTT-----TGTTACACTGACAAAAGAGAACCCACGCTAGC-GTTTTTT-------------TTTGCGCAACTGCACAACTGCATGTCAGTT---GGAAATCTGGTGAGAGACACATTTGCTCCTCTTCTCAGC-----CCATTGAA---------TTGTTTT-------GTGAAGAAAGATGGTGAGTGACG
s cb4.chrX              9895966 254 + 21540570 attcatc-gtttttttttgatactgCAACCAT-------------CCAAGTAAA--CACATGTCGACTTCTCAATCGCCCACCatttgttttcatttct------tttgaaaacgttTCTGTTCGCC-TCTCTCACTTACTTT-----TGTTAC----ACAAA----AACCca----agttgttttttctcgcattttttctctctg--------tgaCTTTGTGTCATTT-GAAGAAATCA------------CTTTGTGGCACTTCTTTTT---ACTTCTAGAA-------AGCttctttta--taga---aaaaaaatggtgagTAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1510140 251 -  4500979 TTTTATCTATTGTTTTACAATAAGGCAGGCGT-------------TCAAGTAAA--CACGTGTCCCTTCGATAGATACTCac--tttgttttcatttct------tctcaaaagttttctctt------------tttacttt-----TGTTACACTAACAAA----AACCCACGcgagtcgtttttt-------------tttctg--------caacaGCATGTCAGTT---AGAAATCAATTGAGAGACACTTTTGTTGCTCTCCTTTCT---TCCCATCAAAGTTTTAGAGCTGCTTT-------G---AGAAAAATGGTGAGTGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   249247 248 +   386604 TTTTATCATCTGTTTTATGAGACTGCAAACGT-------------TCAAGTAAA--CACGTGTCCGCC-----GATACTCac--cttgttttcatttct------tctcaaaacttttgt---------------CTTACTTT-----TATTACACTAACAAAA-AGAACCCACGCGAGT-G---TTT-------------TTTCTG--------CAACTATGTGTCACTT---AGAAATCAATTGAGAGACACTTTTGCtgctcttcttttcgtttctctcaCAGGTTCTGACTTTGgttt-------gagaagaaagatgGTGAGTGACG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2820941 238 +  4147112 TTTTATCATCTGTTTTATGATACTGCAGGCGT-------------TCAAGTAAA--CACGTGTCCCTC-----AGTGCTCAC--CTTGTTTTCGTTTCt------tctcaaaacgttttttctc-----------cTAACTTT-----TGTTACACTA---------AACCCACgcgagt-gtttttt-------------tttctg--------caactaTGTGTCAGTT---AGAAATCAGTTGAGAGACACTTtcgcttcttttcttttc------ctgaaaACTCCAAACGTTGTTTT-------G---AGAAAGATGGTGAGTGACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   79821 259 -   130595 -tttcttattatttttaaaattagttaattttaaatattttttggttaaataaatGCACATGCTCGCT-----GACGCACacc-tttgtttttatttctctcTAACCTAGAAAATCCTCCTTT------------TTTACTTTCTGTCTGTTACACT--CAACCTGGAACcca-acaaca------tt-------------tttttg--------tgacTACATGTCAGTTAGAAGAAATCAGTTGAGAGAAACTTTTGctcttccttttctt---------------------tttgcttTTACGTCGG---AAAGAAATGGTGAGTGCCG
i caeJap4.Scaffold17739 I 5342 I 62

a score=1731.000000
s ce10.chrX             4588544 49 + 17718866 TGACAAACACGTAATTGGCGAAAATTGGTCAATATTTTCAAAAAAGACC
s cb4.chrX              9896220 28 + 21540570 -GT-AA---TGTAATTAGTTAAT----TTTAGTTTCT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1510391 40 -  4500979 TGT-GAACGTGTAATTAGTGAAA----ATCAAGATTA----GGAAGACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   249495 34 +   386604 TGA-ATGCACGTAATTA----------GTCAATATTT----AGATGAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2821179 44 +  4147112 TGA-ATGCACGTAATTAGTAGATTTAGGTCAATATTT----GGTTGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   80080 62 -   130595 I

a score=1097.000000
s ce10.chrX             4588593 2 + 17718866 TT
s caeRem4.Crem_Contig0  1510431 2 -  4500979 Tt
i caeRem4.Crem_Contig0  C 0 I 65
s caeSp111.Scaffold622   249529 2 +   386604 TC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2821223 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   80142 2 -   130595 TT
i caeJap4.Scaffold17739 I 62 C 0
e cb4.chrX              9896248 0 + 21540570 C

a score=-2255.000000
s ce10.chrX             4588595 6 + 17718866 TGAC-TA
s cb4.chrX              9896248 2 + 21540570 -----TA
i cb4.chrX              C 0 I 48
s caeSp111.Scaffold622   249531 2 +   386604 -----TA
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0      2821225 1 +  4147112 -----T-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   80144 6 -   130595 TGACTT-
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1510433 65 -  4500979 I

a score=-12315.000000
s ce10.chrX             4588601 53 + 17718866 ----------------------TAGTCGCTGCGATAACAG--------------TTTTACGAGCGTTGGTCACTAAGAACGGGTCTCTG------
s caeSp111.Scaffold622   249536 22 +   386604 ----------------------CTTTCCCtcca------------------------aaacaaaattg---------------------------
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2821226 31 +  4147112 ---------------------------CTTCCAAGTTAGA--------------GGTAAACAACGTTGTTGA-----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   80150 92 -   130595 TTATCGCcatgtttttattattgtttttctgcACGTGTGGCaaactgaaaaactgaaaaacaacACTGgtca---aatattgttttttatattta
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9896250 48 + 21540570 I
e caeRem4.Crem_Contig0  1510433 65 -  4500979 I

a score=-4831.000000
s ce10.chrX             4588654 27 + 17718866 ---GTTTTATCGATTTCGGATCATGTTCTC--
s cb4.chrX              9896298 18 + 21540570 ---GCATTATCGATTTTCCCC-----------
i cb4.chrX              I 48 C 0
s caeSp111.Scaffold622   249558 24 +   386604 ------tttttcattcccATTTGTGTTTAt--
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2821257 24 +  4147112 ------TTTACTATTTCTGGTGgtgttatc--
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17739   80242 32 -   130595 GTTTTCGTATCGATTGCCACAGACATCACCTc
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1510433 65 -  4500979 I

a score=69899.000000
s ce10.chrX             4588681 165 + 17718866 TTTTTTTTTAGATCTTGCTCC---TTCCt-----ttttttaaaatt-aaaa-------tgtaattt--atttttCAGATGGGTAACTTATTTTCAAGGAACAAATCGCCTGCCACAGAGCTTGAGCGAGTTGCTCTTTCAATTGATGATCTGAAAAAGAGGCTTCAGACAATTTCATCCGCAA
s cb4.chrX              9896316 151 + 21540570 --------------CGTCTTC---TCATT-----ACTCCTGTACTGTTTTACATTG--AATGATTA--------TAGATGGGAAACCTATTTTCTCGCACCAAGTCACCTGCCACTGAGCTTGAGCGTGTAGTTCTCTCAATTGAGGACTTCAAGAAGCGACTTCAGACGATATCAGCGGTAA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0  1510498 174 -  4500979 tttttatttaaaatccGCTTC---GTATT---CCACTCATTCAATG-TATGCATTATTaataatta--ctgtttcagatgggAAACCTAATTTCACGCAACAAATCACCGGCCACAGAACTTGAGCGTGTCGCTCTCTCGATTGATGAGCTGAAACGGAGACTTCAGAACATATCTGCAGTGA
i caeRem4.Crem_Contig0  I 65 I 2
s caeSp111.Scaffold622   249584 163 +   386604 ttctt--ctcatttggttttc---ttcat-----tctcacCAAATT-CAGaca-----aataatta----ttttcagatgggaAACCTGTTCTCACGCAACAAATCGCCGGCCACCGAGCTTGAGCGTGTCGCTCTCACAATTGAAGATCTGAAGAAACGACTTCAGACCATTTCCTCTGTAA
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2821283 177 +  4147112 ttttttgctgattcctTTGTCGATGTCATGCACGTTTCGTATAGTT-CAGcca-----ttcatttcatatttttcagatgggaaACCTACTTTCACGCAACAAATCTCCAGCCACTGAGCTAGAACGGGTTGCTCTCACCATTGAGGACCTAAAGAAACGACTCCAGACTATCTCCGCTGTAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17739   80274 151 -   130595 tgttttttatgttttctcttc---ttttt---------------tt-ta---------aattttta----ttttcagatggGCAATATCTTCTCGCGTAACAAATCTCCGGCGACGGAATTGGAGCGCGTTGCTCTCACCATCgaggatttgaaaaaaagactgCAAACTATCAGCTCTGTaa
i caeJap4.Scaffold17739 C 0 C 0

a score=-6637.000000
s ce10.chrX             4588846 25 + 17718866 ----------GTT--TTTG--AAAGTTCACTTTTTCTTC
s caeRem4.Crem_Contig0  1510674 29 -  4500979 ----------ATTTCTTTGTCAACACTCTCAACATAATC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   249747 22 +   386604 ----------GTT-----G--AATAATATCCTTTTCTTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2821460 20 +  4147112 ----------GTTTCTTGG--AATAA-------CTCACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   80425 19 -   130595 gtttttcttggtttttttg--------------------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9896467 19 + 21540570 I

a score=80565.000000
s ce10.chrX             4588871 112 + 17718866 AAAACGTTG---TATATT----TT-CAGAGTAACACAAACACATTGTACTACTACTACATGAGCATCGTCGTGATTCTGAGCATTGCCATGGCTCACACATGGCTGAGATTCGAAGATCC
s cb4.chrX              9896486 117 + 21540570 aaaaagtca---CCTAATTATTTTCCAGAGCAATTCATCGACCCTTTACTACTACTACATGGGCGTCATAATCATTCTGAGCATTGCGATGGCTCACACTTGGCTCCGTTTCGACGATCC
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0  1510703 104 -  4500979 ---AAACCA-------------TTATAGAGCAACTCAACCACCCTCTACTACTACTACATGAGCGTTATCATCGTCTTGAGCATTGCGATGGCGCACACCTGGCTCAGATTCGAGGATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   249769 112 +   386604 GAGTCATTA---TCCAAT----TT-CAGAGCAACTCCAACACTTTATACTATTACTACATGAGTATCATTGTCGCTCTGAGTATTGCAATGGCTCACACGTGGCTTAGATTCGAAGAGCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2821480 116 +  4147112 GAATAACAAGATTCCAAT----TTCCAGAGCAACTCCTCAACTTTGTACTACTACTACATGAGCATCATTGTGGTTTTGAGCATTGCGATGGCTCACACTTGGCTGAGATTCGAAGAACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   80444 112 -   130595 aaactattt---tAACAT----TT-TAGAGCAACTCGAACACTTTGTACTATTATTACATGAGTATTATCGTTGTAATGAGCATAGCGATGGCTCATACTTGGCTCAGATTCGAGGATCC
i caeJap4.Scaffold17739 C 0 I 350

a score=2725.000000
s ce10.chrX             4588983 10 + 17718866 GCAGAAAACG
s cb4.chrX              9896603 10 + 21540570 GACAAAGACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1510807 10 -  4500979 AACAAAGACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   249881 10 +   386604 GACAAAGAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2821596 10 +  4147112 TACAAAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   80556 350 -   130595 I

a score=131378.000000
s ce10.chrX             4588993 185 + 17718866 TATGTGGCGTGTGCTCTGATGTTGGGAGCAATTGGTATTGTTCTTGCTGGTCGCTACGTGATTAACGGATTTTTCTCGTGGAGGACAAACCGTACCACTCAAAAACTTGAAAATGCGATTTCACAGAAGACTACATTGCTGGATCTTGTTAAAGAAACTCTGAAGTTTAAGGTAACA---TATTTAGA
s cb4.chrX              9896613 187 + 21540570 TACGTGGCGTGTGCGCTCGTATTTGGAGCGACTGTCATCGTTCTCACCGGCCGGTACATCATCAACTGCTTCTTCGCGTGGCGCACAAACCGAACTAcacagaaattggaaaacgcGATTACACAGAAGACAGTTTTGCTGGATCTGGTTAAAGAGACTCTCAAGTTCAAGGtatgacatttttctg-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1510817 184 -  4500979 TATGTGGCATGTGCATTGGCCTTTGGAGCAGCAGTGATTGTTCTTGCCGGACGATACGTTATCAATTGTTTCTTCTCGTGGCGTACAAATCgaacaactcaaaaactcgaaaacgcTATCTCGCAGAAAACAACTTTGTTGGATTTGGTCAAAGAGACGCTCAAGTTCAAGGTATG----TATTTTGA
i caeRem4.Crem_Contig0  C 0 I 519
s caeSp111.Scaffold622   249891 183 +   386604 TACGTGGCCTGCGCATTGATTTTCGGAGCTGCTGTCATCGTTCTTGCTGGTCGATACATTATCAATGGATTCTTTTCTTGGCGGACAAATCGTACGACCCAGAAGTTAGAGAACGCCATTTCTCAGAAGACTACTCTCCTGGATCTCGTCAAGGAAACGCTCAAGTTCAAGGTAAG----TTTTTTC-
i caeSp111.Scaffold622  C 0 I 23
s caePb3.Scfld02_0      2821606 183 +  4147112 TATGTGGCATGTGCATTAGTTTTCGGTGCTGCTGTGATTGTTCTTGCCGGTCGATACGTTATCAACGGATTCTACTCGTGGCGGACTAATCGAACAACtcagaaactggaaaatgctATTTCCCAGAAAGGCACTCTTCTCGATCTCGTCAAGGAAACTCTCAAGTTCAAGGTgtg----tattttc-
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17739   80906 177 -   130595 TACGTGGCATGTGCTCTTGTCGTTGGAGCAACAATCGTCGTGCTCGCCGGTCGGTACGCCATAAATGGAATATACTCTTGGAGAGCCAATCGGACAACTCAAAAACTCGAGAATGCCTTAACTCAAAAAGTTGTCTTGTTGGATTTGGTTAAGGAGACGTTGAAGTTTAAGGTATG----T-------
i caeJap4.Scaffold17739 I 350 C 0

a score=677.000000
s ce10.chrX             4589178 10 + 17718866 CCAAAACATT
s cb4.chrX              9896800  7 + 21540570 ---aatgagt
i cb4.chrX              C 0 I 24
s caeSp111.Scaffold622   250097 10 +   386604 CAAAATAAGT
i caeSp111.Scaffold622  I 23 I 21
s caePb3.Scfld02_0      2821804 10 +  4147112 TCAGATTCCT
i caePb3.Scfld02_0      I 15 I 21
s caeJap4.Scaffold17739   81083 10 -   130595 GCAGATAATT
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1511001 519 -  4500979 I

a score=19959.000000
s ce10.chrX             4589188  73 + 17718866 AAAAGTTTA---------------AATTTAAGTCA-------------------------------ACTTTATTCAGGAAGCCAAGGAGATATTGGACCGATATGAGAAGAT---CGAAC---AG
s cb4.chrX              9896831 125 + 21540570 AAATTTTTCTATGGTAGAAAGTCACTTGCCAAtccttattcaaaaaatagcaCTACATCTCAAGAAAATTCTTTCAGGAAGCCAAAGAAATTCTGGACCGCTACGAGGAGAAAACCGAGGCTGGA
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0  1511520  65 -  4500979 aaaattttc---------------------------------------------------------aaatcttttagGAAGCCAAAGAAATCTTGGATCGCTACGAGAAGAG---TGAACTGGAG
i caeRem4.Crem_Contig0  I 519 C 0
s caeSp111.Scaffold622   250128  81 +   386604 atatttttg----------gaattcaagCTAATCC-------------------------------ATGTTTTCCAGGAAGCCAAAGAAATTCTGGATCGCTATGAGAAAAC---TGAGCAAGAG
i caeSp111.Scaffold622  I 21 C 0
s caePb3.Scfld02_0      2821835  73 +  4147112 aaa---------------------aaatataatcctta----------------------------aaatttttcaggaagccAAAGAAATTTTGGATCGCTATGAGAAAAG---TGagcaagaa
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17739   81093  77 -   130595 ------------------CAAGTGATTTTAAATCAGTAATCG------------------------CAATTTTCCAGGAGGCCAAAGAAATTTTGGATCGGTTCGAAAAGAA---TGACCAG---
i caeJap4.Scaffold17739 C 0 I 1176

a score=23693.000000
s ce10.chrX             4589261 159 + 17718866 AATACGACAATTGACAAAAATGATTCAACACTCAAATCGCCATCGCCTATCAAGAAGCTTACTGCTGACTCGTCAATGTTTGCAACTCCG---AAGCAAGAGCAAAAAAGAGTTGAAACTCCAACGGCGCAA---------------GGTCCGAACTCTGCCATGAACTCGGTAAGT
s cb4.chrX              9896956 162 + 21540570 AACACCCCAACCGAAAACAGCAAACTGATTCATCAAC---------------AGAAACAACAGAATGAGACGcttgtttcaaaaacaataatgAAACCAGATCAGAAGCGTGTGGAGACTCCAGTTTCCCAGAAACCAGTTCCGTCAAAACCTGGAATCGCATTTGACTCGGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1511585 162 -  4500979 AACA---CGACGGATCAAGCCAGACTCATTCGTCAACCACCAACTCCACAGAAGAGACAAATAATCGATAACGCTACTCCGGGAACTCCA---AAACAGGATCAGAAGAAAGTCGAAACTCCAACTGCACAA---------CCTGCAAGACCTGGCACTGCAATGAACACGGTGAGt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   250209 165 +   386604 AACAATACCAACGAGAAAACCGCCTTGATTACACACCCACCATCGCCACAAAAGAAACCGTCTGCTGATGTATCGGCGTTGGGAACCCCG---AAGAAtgagcagaaaaaagtggaaactCCAGTTGCTCAG---------CAGCCGAGACCTGGAACAGCTATGAATCAGGTAAAT
i caeSp111.Scaffold622  C 0 I 42
s caePb3.Scfld02_0      2821908 153 +  4147112 aatcaaaaaactgagaaggCTCCATTGATCTCCCAACCACCAATAATACTGAAGAGACCG------------TCGGCACTGGAAGCACAA---AAGCAAGAACAGAAGAAAGTGGAAACTCCAAAGGCTCAG---------CTCCAGAGACCAGCCACCGCGTTGAATTCCGTAAGT
i caePb3.Scfld02_0      C 0 I 1409
e caeJap4.Scaffold17739   81170 1176 -   130595 I

a score=42.000000
s ce10.chrX             4589420 3 + 17718866 GAA
s cb4.chrX              9897118 3 + 21540570 ATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1511747 3 -  4500979 gaa
i caeRem4.Crem_Contig0  C 0 I 158
s caeSp111.Scaffold622   250416 3 +   386604 gaa
i caeSp111.Scaffold622  I 42 C 0
e caePb3.Scfld02_0      2822061 1409 +  4147112 I
e caeJap4.Scaffold17739   81170 1176 -   130595 I

a score=-1264.000000
s ce10.chrX             4589423 12 + 17718866 --------AATATTTAAATT------
s cb4.chrX              9897121 15 + 21540570 -----AGTATTATATAAATT------
i cb4.chrX              C 0 I 1067
s caeSp111.Scaffold622   250419 26 +   386604 aattgtgttttaaaataatttcaatc
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2822061 1409 +  4147112 I
e caeJap4.Scaffold17739   81170 1176 -   130595 I
e caeRem4.Crem_Contig0  1511750 158 -  4500979 I

a score=-4948.000000
s ce10.chrX             4589435 103 + 17718866 GACAC---------------------------------------------------------------------------------TCAATTTTGAA-------------TGTGA----------------------------AGTGGGACAATTCATA---------------------------------ACTAAATTACCGACCACATATTTTA---------TCTGAGAGATTCTGA---------AACCTGCGCCAAGTAGAAGCACAGTC
s caeSp111.Scaffold622   250445 276 +   386604 gctgcaaaaattttgattttaccGTTGTAGTCGGTGTATGCTGAAGCCCATcagttctcattttttaagccatgagtttttcaacatcAGTTTTAAAACATATCTTTGTTCATGATTCTTCTAGTTCACTCTTCTCTCAAATCATTGGGTCAATATCTATAATAATATGAAAAGATCCTAGTTAGTCCACTTATTAATTCATTCCCCATATTTCTTGACATTCAGCTATACGAAATAGTGACAAATAGTCAACGTATTCCGAGGACCACttcagct
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2822061 1409 +  4147112 I
e caeJap4.Scaffold17739   81170 1176 -   130595 I
e cb4.chrX              9897136 1067 + 21540570 I
e caeRem4.Crem_Contig0  1511750 158 -  4500979 I

a score=-4880.000000
s ce10.chrX             4589538  44 + 17718866 ATTGATAT---TTTGG-------------CAAA-----------ATTAC-------------------CTAACTTTATAGACACTTAAAC------------
s caeRem4.Crem_Contig0  1511908  52 -  4500979 attttttt---cttgg-------------GAAT-----------CTTTCAAGTAGT------------CTACTTGCATAGTGCCTTTCGAA-----------
i caeRem4.Crem_Contig0  I 158 C 0
s caeSp111.Scaffold622   250721 102 +   386604 attttttctcatttggaagaataagaaatgaattaaaaTAGACATTTTCAAGTGGTCGTGAAATCATCCCAATTTATTAATCTCTtgctaaaaaatttaaaa
i caeSp111.Scaffold622  C 0 I 15
e caePb3.Scfld02_0      2822061 1409 +  4147112 I
e caeJap4.Scaffold17739   81170 1176 -   130595 I
e cb4.chrX              9897136 1067 + 21540570 I

a score=-554.000000
s ce10.chrX             4589582 6 + 17718866 AAAATG--
s caeRem4.Crem_Contig0  1511960 6 -  4500979 GAAATG--
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold622   250838 6 +   386604 --aatagg
i caeSp111.Scaffold622  I 15 C 0
s caePb3.Scfld02_0      2823470 6 +  4147112 --aatatc
i caePb3.Scfld02_0      I 1409 C 0
e caeJap4.Scaffold17739   81170 1176 -   130595 I
e cb4.chrX              9897136 1067 + 21540570 I

a score=9714.000000
s ce10.chrX             4589588 23 + 17718866 -TAT-------------TCTTTCAGATGAACATGACC
s cb4.chrX              9898203 23 + 21540570 -TAT-------------GTTTTTAGATGAACATGACT
i cb4.chrX              I 1067 C 0
s caeRem4.Crem_Contig0  1511991 23 -  4500979 -ttc-------------aatttcagatgaacatGACT
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold622   250844 37 +   386604 atttttggctaattgaaattttcagatgggcATGACC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2823476 23 +  4147112 tttt--------------ttttcagatgaatatgACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   81170 1176 -   130595 I

a score=99693.000000
s ce10.chrX             4589611 112 + 17718866 CCTTATCACCAGCGGAACAGAAATGCTGTCCCAATTCGTCCATTCCTTCGCCAGACAACTGCCTTTGACAGAGTGCTTGACTATTTTATGTCCGATGGACCTAACTGCAGGT
s cb4.chrX              9898226 112 + 21540570 CCATACCAACAACGGAATTCAAACGCCACTCCAGTTCGTCCATTCCTTCGTCAGTCCACCGCTCTCGACCGAATTCTGGACTACTTCATGTCGGACGGACCCAATTGCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1512014 112 -  4500979 CCATTCCACCAACGCAATCCCAACGCAGCTCCAATTCGTCCCTACCTCCGACAAACAACAGCACTCGACAGAGTTCTCGACTACTTCATGTCGGATGGACCCAACTGCAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   250881 112 +   386604 CCGTACCATCAACGCAACCCGAATGCTGTTCCAGTCCGTCCATTCCTTCGTCAAACCACTGCTCTTGACAAACTTCTCGACTACTTCATGTCGGACGGACCAAACTGCCGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2823499 112 +  4147112 CCTTATCATCAACGGAACCCGAATGCTGTCCCAGTTCGTCCATTCCTCCGACAGACAACTGCCCTTGACAAAGTGCTCGACTACTTCATGTCGGATGGCCCCAACTGCAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   82346 112 -   130595 CCTTTCAACCAACGCCATCCAACTGCGACCCCAGCTCGTCCCTACCTCCGCCAAACGACTGCTCTCGATCGAGTGCTCGATTACTTTATGTCGGATGGGCCCAATTGCAGGT
i caeJap4.Scaffold17739 I 1176 I 62

a score=-13270.000000
s ce10.chrX             4589723 23 + 17718866 TTGTTGAC-------TCGTAATAAG----------------------TTATA--------------------
s cb4.chrX              9898338 64 + 21540570 CAGATgac------attttataaaaaatatgcACTACTTTTCCATTCCTATTTTTGT--CTTCGTCGTCATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1512126 51 -  4500979 CAGTTGACTCCCGTGATTCATAAAA---------------------TCTATTTTCGTTCTTTCATCGTCATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   250993 21 +   386604 AGG-TCAC-------TCTCA---------------------------TTATTTATG----------------
i caeSp111.Scaffold622  C 0 I 38
s caePb3.Scfld02_0      2823611 36 +  4147112 AAGCTGAC-------TCTCAATGCA-------------CTTCTACTTTTGTTTCTG----------------
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17739   82458 62 -   130595 I

a score=-2362.000000
s ce10.chrX             4589746  9 + 17718866 CCAAGGTAA-
s cb4.chrX              9898402  9 + 21540570 ACACAGCCA-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1512177  9 -  4500979 GCGATGTGT-
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2823656 10 +  4147112 TTGTCGTGTT
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17739   82458 62 -   130595 I
e caeSp111.Scaffold622   251014 38 +   386604 I

a score=1910.000000
s ce10.chrX             4589755 2 + 17718866 CT
s cb4.chrX              9898412 2 + 21540570 CT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1512187 2 -  4500979 CT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   251052 2 +   386604 CT
i caeSp111.Scaffold622  I 38 C 0
s caePb3.Scfld02_0      2823666 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   82458 62 -   130595 I

a score=168329.000000
s ce10.chrX             4589757 296 + 17718866 AATGATCCTCATTTTTCAGAAACGCTTTGATTTGCTCCATTTGTCATACACATAATGGAATGTCAACTCCGGCCGAGTATCCATATATATCCTTCCGGTGCTTCGAATGCGGACATCTTAATCCGGCCAAGAAAATGGGGTATG-----TTTCTCT------------------CAAAAGTTC----CAGAAAT--------------AGTTTTGTAGAT--ATATTTTCAGACCACAAATTCCGTTGACTCGTCCGCCGATGGGTCCAAAGGGCATTCAACACAATGGAAGAGTTGGTCCGTCTGAAA-----ATACTCA---------------CAATATGATGGAGAATCAGAAGC
s cb4.chrX              9898414 327 + 21540570 AATGatactcatttttcagaaacgctTTGATCTGCTCCATCTGTCATACACACAATGGAATGTCAGTGCCAGCGGAATATCCATTCATCTCCTTCCGCTGCTTCGAATGCGGCCATCTGAATGCCGCAAAGAAAATGGGGTAGGGcctttttccttgtttttttctgccaGCAAAAGAAGTTCCAAACAGGAAa--------------cgtttt----------attttcagaccacATCTTCCAATAACCCGTCCACCAATGGGTCCAAAAGGCATTCAACACAATGGCAGAGCTGGACCAGTTCCACCTAAAAATCAACAACCCGTCGT--------GCCAATGGAGAATCCGAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1512189 309 -  4500979 AAtaactctcatttttcagaaacgctTTGATCTGCTCCATTTGTCATACACATAATGGTATGTCAGTGCCAGCGGAATACCCATATATCTCCTTCCGTTGCTTCGAATGTGGGCACTTGAATCCGGCCAAGAAAATGGGGTAAGGATTATTTCTC-------------------GAGATG-----ACTATAAAT--------------AGTTTTGCG-------GCTTTCAGGCCACAAATCCCACTGACACGTCCACCGATGGGTCCGAAAGGTATCCAACACAATGGAAGAGTGGGTCCAGGTCCTC-----AAGCCCCTTCTGGTAGTGATTCTGAGTTGCTGGAGCAACAGAAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   251054 314 +   386604 AATAgagctcatttttcagaaatgctTTGATCTGCTCCATTTGTCATACACATAATGGAATGTCAGTGCCTGCGGAATACCCATACATCTCTTTCCGTTGCTTTGAATGTGGACACTTCAATCCGGCGAAGAAAATGGGGTGGG------------------------------TAGTTGCTACgaacagaatgaaaattgtcCTCCtagattc----------attttcaggcCACAATTCCCATTGACACGTCCTCCAATCGGACCAAAAGGCATTCAACACAATGGAAGAGCTGGACCATCTGCAC-----CAGCTCCACAGGGAAGTGATTCGGAAACTAACGAGAGTCAGAAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2823668 291 +  4147112 AATAgcgctcatttttcagaaacgctTTGATCTGTTCCATTTGTCATACACATAATGGGATGGCAGTGCCAGCCGAGTACCCATACATCACTTTCCGATGCTTTGAATGTGGGCATCTGAATCCGGCTAAGAAAATGGGGTAAGAAAACTTTGTCGGAGTTTCTA---------TAGTTACTA--AACATAAAG-------------------------------TTTTCAGGCAACAAGTCCCAATCACACGTCCACCAGTTGGACCGAAAGGAATTCAGCACAACGGAAGAGTCAGCCAAGTTGCAC-----CCTTTCCACAGGGAAA------GGAAACT---------------C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   82520 295 -   130595 AACGACGCTCATTTTTCAGAAACGCCTTAATCTGCTCCATTTGTCATACACACAACGGAATGGCTCTTCCTGCCGAGTACCCATATATTGCCTTCCGCTGTTTTGAATGCGGTCACCTGAATCCTCCGAAGAAA---GGGT---------------------------------AAGGAGCTAAAAATAGATAA--------------ATGATTgattgttgattttttcagaCCCCCAGTTCCACTGACTCGGCCACCAGTTGGACCAAAAGGCATTCAGCATAATGGAAGGACTGGATTGCCGATAA--------------ATGGAAATAATGCGAACCCGACGAATAATAATCAGC
i caeJap4.Scaffold17739 I 62 I 1769

a score=23694.000000
s ce10.chrX             4590053 43 + 17718866 CGTCAACTGACCTAACCCCATCTGCCAGTCAAAATGGATCTGA
s cb4.chrX              9898741 43 + 21540570 CGTCGACCGACTTGACACCATCTGCCAGTCAACATGGATCGGA
i cb4.chrX              C 0 I 339
s caeRem4.Crem_Contig0  1512498 41 -  4500979 CGTCAACTGACTTGACTCCTTCTGCAAGTCAAAATGGATCT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   251368 43 +   386604 CATCGACTACTCTGACGCCAACTGCTAGTCAACATGGATCTGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2823959 43 +  4147112 CGTCCACTGACTTGACTCCATCAGCAAGTCAGAACGGATCGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   82815 1769 -   130595 I

a score=650.000000
s ce10.chrX             4590096  88 + 17718866 AAAAGGATCAGACTCGGAAAATGAGAAGGTCCCGGAGTCCAAGACAATGGAAACTGAATTCCATTAAAAGCCAAT-CATACAACTTGTA-------------------
s caeRem4.Crem_Contig0  1512539  68 -  4500979 ----------GACTCGGAGACCGAAAAGAACAAT---GTGAACAAAATTCCGGCTGAA-------CAGTCTTAAT-TATATGTCATGTA-------------------
i caeRem4.Crem_Contig0  C 0 I 417
s caeSp111.Scaffold622   251411  97 +   386604 GAAAGGGTCGGATTCCGAAgtcgagaagaaaactgatgCCAAGGAA---GTGGCCGAA-------CAAACCTAAT-CACATTCTATAGAATAGTTGTTTATGAGTATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2824002 101 +  4147112 GAAAAGCTCGGACTCGGAAGCAGAAAAGACCAATCAAGAGAAGAAGGCTGTGGAGGAA-------AAGTCTTAATGGGGATTCCATAGAATAGCACTTCATATATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e cb4.chrX              9898784 339 + 21540570 I

a score=9978.000000
s ce10.chrX             4590184 222 + 17718866 GACTAAACATGTTCCGGG--TTTCTTTTTTGTTATTATTCAAATTTTCCACTCGTCTCCAAAAAACGCGTTTCTTAAATTATTCGTTAACTCATTTTTTCAAAGCAAAATAGTTGTTTTTGCAGCCTCCGTTCTCTGGTATCTGTACTATTGTTGTGAAGATCATTCGAAATTTCTGTTCGACCTTGCCAAATACTTTAACATTTTTGTTTTGATCTAATGAAC
s caeSp111.Scaffold622   251508 178 +   386604 GTCTACCAACTTGTCgggtcttttttcttta----tattttGGTCACTTATTTATT------------------GAGATAACTATTT---TCTCCGTACC-----CATAT----TTTTCTACAA-----ATGTTCTGGT-TTTGTACTATTGTTGTGAATATTGTCTTAAGATTTCATTGAGCCTTGCCAGAT--TTCag----tttgttctttttcaatgaac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2824103 190 +  4147112 GTTTATCA--TTTCCGGG--TTCCTTTTTTA----TGCTCTTATTATTTATTGTTT---------CGCATTTCctagctaatttttt---tttcattttctaagtcatata---ttttttccaa-----agccTCTGGTATTTGTACTTTTGTTGTGAATATTGTCTTGAAATATTATTGGACCTTGCCAGAT--TCGAA----TTTGTTCTCTTCAAATGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e cb4.chrX              9898784 339 + 21540570 I
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=0.000000
s ce10.chrX             4590406 767 + 17718866  
e caePb3.Scfld02_0      2824293   0 +  4147112 C
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e cb4.chrX              9898784 339 + 21540570 I
e caeSp111.Scaffold622   251686   0 +   386604 C
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=536.000000
s ce10.chrX             4591173 17 + 17718866 TTAACAGGCTTTATAAA
s cb4.chrX              9899123 17 + 21540570 TTGCCAGATTTTAAGag
i cb4.chrX              I 339 C 0
e caePb3.Scfld02_0      2824293  0 +  4147112 C
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e caeSp111.Scaffold622   251686  0 +   386604 C
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=-363.000000
s ce10.chrX             4591190 19 + 17718866 -TTTCCAATT---TTCTTCCAAT----
s cb4.chrX              9899140 23 + 21540570 ttcttctct----cttctcaaatgaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   251686 22 +   386604 -tTTCCACTTGAGTTCCTGAAAT----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2824293  0 +  4147112 C
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=-4834.000000
s ce10.chrX             4591209 33 + 17718866 TTTTTAAAA--------GGAAAATTGCAATAAACACGGGAT
s cb4.chrX              9899163 39 + 21540570 tttttaactcaagcatctgaaaattgt--agaatacgtgaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   251708  6 +   386604 -------------------------GT----------TGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2824293 33 +  4147112 TTTCCAAAT--AGCGTT------TTGTTTTGAACCCGtgta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   82815 1769 -   130595 I
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=2388.000000
s ce10.chrX             4591242 7 + 17718866 AAACAAG
s cb4.chrX              9899202 7 + 21540570 aaaagaa
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold622   251714 7 +   386604 AAAGAAA
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2824326 7 +  4147112 aaaaata
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17739   84584 7 -   130595 AAACGTA
i caeJap4.Scaffold17739 I 1769 C 0
e caeRem4.Crem_Contig0  1512607 417 -  4500979 I

a score=232527.000000
s ce10.chrX             4591249 706 + 17718866  
s cb4.chrX              9899213 689 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1513024 683 -  4500979  
i caeRem4.Crem_Contig0  I 417 C 0
s caeSp111.Scaffold622   251726 670 +   386604  
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0      2824338 689 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17739   84591 571 -   130595  
i caeJap4.Scaffold17739 C 0 I 65

a score=-43834.000000
s ce10.chrX             4591955 156 + 17718866 TGGGACTAATG--------GGATTA---ATGAGT-CGGTGACTCGACG----------------CTAGGACATTCCAATTTTTTG-----------CGCCTAATTTTTGAGACATA--------------------------TTTTG---------------GAAGTGAATTGCATTACT---AGATTGT----GTATTGAGGATTTA-------------------TGTACATGTTTGG-----------TTTTGACAGGATTCA-------CCCACTC
s cb4.chrX              9899902 137 + 21540570 TCTGACAAAATGac-----gaattaga-attttt-taggaaGGTGGTG--------AACCTTGTTG----GACCCCTCT-------------------AGTGATTATTCAGACGCATA--------------GTCAGGAAGTGTTCAGGA------------GGAAGGA--------------AGAGACA--------TGTTAGTTTT-----------------------------CGG--------------CAATGAGTCACA--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1513707 212 -  4500979 TATGACTAAGTGATTAATGGAATTAGGCATGTAT-TCTGGAGTCAGAGTaaaaaaaCACTCCGTTGAAGTAACTACTCTGTTAAG---------ATCCGTTAATTATTTGGAGGTAAAGAGA--AGCATTCTGGCAGGAAGTTTTTAGCAAACTTGTTGTTCAGAATGACTC-----ACT---AGATTCAGATTCTATTGTGTGTTTT-----------------------------TAG------------TCTAATAGGTTGTAAAAATTC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   252396 203 +   386604 -gtgTCCGAATCAT-----GAATGC---ATTTAT-TGCAGGTCCCGAA---ATGAAAAGGCATTTTGAATAGTATCTCTCTCTAGTATACTGGGAACTGATAATTATTCCG-------------CGTCTAGAGACAGAACACATT--------------------ATGACTC-----ACTTCCAGACTAA----TTTGTGAAAGCtct----ttagaagaagaaatttggGAAAAGTTGG-----------TTTTGACAGGTTTCA-------CCCACTC
i caeSp111.Scaffold622  C 0 I 86
s caePb3.Scfld02_0      2825027 230 +  4147112 TGTGACTAACTGAT-----GAATGA---GTCTATGTGTTAAGCCT-----------AGATCATCTCACGTAACATTCAATTTCAG-GCATGGGGGTCTGATAATTATTCCGAGGTGAAGGAACACTTATCAAGACAGGAAGTTTTGG---------------AGAGTGACTCAC--TACTTCCAGACTAA----TTAGTGTGTTCTTCATTGTCAGGACCAAAATTTAGGAACTAGTTGGTTTTGACAGAATTTTGACAGGTTTCA-------CCCAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   85162  65 -   130595 I

a score=-269.000000
s ce10.chrX             4592111 14 + 17718866 GGAGACTCCTTGTC
s cb4.chrX              9900039 11 + 21540570 -GAATTCCTTTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1513919 11 -  4500979 -GGatatatttg--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2825257  0 +  4147112 C
e caeJap4.Scaffold17739   85162 65 -   130595 I
e caeSp111.Scaffold622   252599 86 +   386604 I

a score=-24061.000000
s ce10.chrX             4592125 74 + 17718866 AAATTGTAATTCTTAGCACGACG----------------------------ACACCAA-----TTCGTTTT---AACAATACATGGAGAGCTATGT--------CTAG----TGTTACATTT--
s cb4.chrX              9900050 76 + 21540570 ---------TTGTAGGGAAAATA----------------------------ACTTGGAATAATTTGGTTTTGACAgcaagg-agaagaagataCTC--------CTACGCTTTTTCTCACTA--
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0  1513930 95 -  4500979 ---------tttttgacaGGTTGCTCCCACTCATGCTTTTCATAGGGCCCTACTCAAagaattcttgtttt--cagaaattcagaataagGAATTC----------------TTTTTCATTA--
i caeRem4.Crem_Contig0  C 0 I 30
s caePb3.Scfld02_0      2825257 71 +  4147112 -------------------------------------------------TCACATtgcgaatttttgtttt--tctaaatccaaaaaaaattatgttcatCAAGCTAGTCTTATTCTCATCT--
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17739   85227 37 -   130595 ---------------------------------------------------------------------------------------AAAGTGTAAACATCTGAATAGACTTTATCAGGTATCC
i caeJap4.Scaffold17739 I 65 C 0
e caeSp111.Scaffold622   252599 86 +   386604 I

a score=320719.000000
s ce10.chrX             4592199 632 + 17718866  
s cb4.chrX              9900141 664 + 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0  1514055 643 -  4500979  
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold622   252685 636 +   386604  
i caeSp111.Scaffold622  I 86 C 0
s caePb3.Scfld02_0      2825338 643 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17739   85264 629 -   130595  
i caeJap4.Scaffold17739 C 0 I 965

a score=6717.000000
s ce10.chrX             4592831 29 + 17718866 TTTACAGAGTCGAAACGGAACTATTTTGA--
s cb4.chrX              9900805 28 + 21540570 TTC-TAAAGCTTAAACGGAATTCACTTGA--
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0  1514698 28 -  4500979 ttt-tgaaactgaagcGGAATTCATCCAA--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622   253321 30 +   386604 ttt-cgaaactaaAACGGAATTCCCGATAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2825981 30 +  4147112 TTT-TAAAACTAAAACGGATTCCACTATAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   85893 965 -   130595 I

a score=-1392.000000
s ce10.chrX             4592860 28 + 17718866 -GAAGCCTATCCCTCTCTATATAGTGCAA---
s caeRem4.Crem_Contig0  1514729 28 -  4500979 -GAGGTCGATTTCAAATTCTCAGATTCCA---
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   253351 31 +   386604 GGAGGTCGA-CCCACTCAATCCGTTAGTACAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2826011 29 +  4147112 GGAGGTCGA-CTAGATTCATCAGTTAGTAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   85893 965 -   130595 I
e cb4.chrX              9900833 22 + 21540570 I

a score=35796.000000
s ce10.chrX             4592888 314 + 17718866 CCACCAATTGCATCTATTCACAGATT----------TTGAAATCGCTGTTGCTGTTTT-ATACAAGAAA-ACAGCAAAGTACACAAGAAAACCTACCCATAAATGTGTAAAATACTATTTCG-ATGACTTGTCAAATTAATT----------TGAAAC--------AAAA--TTCTTATTC------------TATGTACACTCT-TCCAAAATTAACTTAT--------GTCCAGGACGCCCACTGTGTGTATTTCTTTGAATTCATAAGTCATAG--------AGATGAAGTACTC-----CCC------AAAG-----------------------------CATC-----TTGATTAAAAACAAGATCGTTTCA--ATGGCACAATAAGAATCAAAGTTTAACTACTGGTTTTTGAAAC
s cb4.chrX              9900855 321 + 21540570 CCACCAATTAGCTCTATTCAGGATTT-----CTTTGTACTGATCTT--T--CCACTTC-CAAG--------TTTCAAAGTACAA-----------------------------GCTGTTTCA-AGAACT-----GTTT--------------CAAGGCTA------GAAAG-CTATAGTTCGTcagaaaaatgattggaaTCCCATTCCAAAATTAGCAT----------CACCCACACG-----TGTCTGTCCCCCGAAAAAGTCATAAGTTTTGA--------ACATAAAA-ACTCTCTTTCCCTAGAAAGGAGCCCGAGACATTTTTATTTGTCGGACTGCGCATCT--C-TTGATTAAAAACAAGACAGTCGTTGGGAAACA-GATAAGAATCAAAGTTTAACTACTGGTTCTTGAAAC
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0  1514757 328 -  4500979 ----CAATTAGGTCTATTCAGAACTA-----C----AAATAGTCTTTGT--CCAATTC-aaagatgaaa-atttcatagtACAA------------------------------CTACTTCGTAGAACT-----GTCTAGTTTCGAAATACACGAGAATATT----GAAAGTTTGTTATTCATTAGAAC----TTTGGAACCGCA-TCCAGAATAAACTTATACAAAACATTCCCATATG-----TCTATGTCTGCCAGAAAAGTAATAAGTTCGGA--------ACataaaa-ac-------cattcaaaaaaag---------ttttcatttcttagACTGCTCATCCGAC-TTGATTAAAAACAAGATAGTTATT--TCAACA-GATAAGAATCAAAGTTTAACTACTGGTGTTTGGggt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   253382 323 +   386604 AGATAAATTGAGCCTATTCAGAACTA-----C----CAGTGGCCTCTAT--CCGgttg-gaaaatggaa-agcTCAAAGTACAAAA--------------------------CGTTTTCTTG-GGAACA-----GTTTAGTT----------TCATACCATCACC-AAAAGTTCATTATTCATCTGAGT----TCCTGCAGCCAA-TATAG----TGCTC----------ATTGGCAATG-----TCTGTGCCTTCTCTAGAAGTCATAAGTTTCGGAcatgaaaacataaaa-actg-----CCAGAATTAGAAG---------TTTTTATTAGAC-GGCTGCTCATCCGAA-TTGATTAAAAACAAGACTGTTATT--GCAACA-AACAAGAATCAAAGTTTAACTACTGGTTTTTGAATC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2826040 315 +  4147112 -----AATCAGCTCTATTCAAAACTACACTTC----CTTCGATCTTTAT--CCTTCAGAGGAAATAAAACATCTCAAAGTACAGAG---------------------------ACTTTCCCA-GGAACG-----GTCTAGTT----------CCAAACTaccatcaaaaagtttattattcATCTGAGT----TCCTGAACTGCA-TA--------ACTC----------ATTCCGTATG-----TCTGCGTATTCTAATAAAGTCATAAGTTCCGG--------ACATAAAA-ACTC-----CCTAAAAAAGAAG-------CATCTTCATCTCA--GACCGCTCATCCAAACTTGATTAAAAACAAGACAGTTATT--GCAACA-AACAAGAATCAAAGTTTAACTactggtttttgaaac
i caePb3.Scfld02_0      C 0 I 2831
e caeJap4.Scaffold17739   85893 965 -   130595 I

a score=230.000000
s ce10.chrX             4593202 7 + 17718866 TTTAAAG
s cb4.chrX              9901176 7 + 21540570 TTTTCCT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0  1515085 7 -  4500979 tttcgag
i caeRem4.Crem_Contig0  C 0 I 776
s caeSp111.Scaffold622   253705 7 +   386604 ttataag
i caeSp111.Scaffold622  C 0 I 794
e caePb3.Scfld02_0      2826355 2831 +  4147112 I
e caeJap4.Scaffold17739   85893 965 -   130595 I

a score=404.000000
s ce10.chrX             4593209 25 + 17718866 CCATCCAGAATTAT--CTCA-GGCTTCT
s cb4.chrX              9901188 27 + 21540570 ACAT-CAACATTATGGCTCATGGCTTCT
i cb4.chrX              I 5 I 1033
e caePb3.Scfld02_0      2826355 2831 +  4147112 I
e caeJap4.Scaffold17739   85893 965 -   130595 I
e caeSp111.Scaffold622   253712 794 +   386604 I
e caeRem4.Crem_Contig0  1515092 776 -  4500979 I

a score=0.000000
s ce10.chrX             4593234 1465 + 17718866  
e caePb3.Scfld02_0      2826355 2831 +  4147112 I
e caeJap4.Scaffold17739   85893  965 -   130595 I
e cb4.chrX              9901215 1033 + 21540570 I
e caeSp111.Scaffold622   253712  794 +   386604 I
e caeRem4.Crem_Contig0  1515092  776 -  4500979 I

a score=462.000000
s ce10.chrX             4594699 54 + 17718866 TTTGAATGTTTGAGTTACAT---AGTTTTTTTCAATACTATTTCCCATACCCATCAC
s caePb3.Scfld02_0      2829186 56 +  4147112 TCTAACTGCTCCAGTTCAATTCGAATCTATGTCAA-AATGTTCACTATACAACTCAT
i caePb3.Scfld02_0      I 2831 C 0
e caeJap4.Scaffold17739   85893 965 -   130595 I
e cb4.chrX              9901215 1033 + 21540570 I
e caeSp111.Scaffold622   253712 794 +   386604 I
e caeRem4.Crem_Contig0  1515092 776 -  4500979 I

a score=-2313.000000
s ce10.chrX             4594753 25 + 17718866 --------ACATTTCACACTTCAGCGTA---GAATC---------------
s caeRem4.Crem_Contig0  1515868 35 -  4500979 --------ACATTTC-TATTTTAGTGTACATGAATACTC-----CGATA--
i caeRem4.Crem_Contig0  I 776 C 0
s caePb3.Scfld02_0      2829242 48 +  4147112 acattttgacatttc-tgCTTC--TAAACGAAACTactctttttcgaaata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   85893 965 -   130595 I
e cb4.chrX              9901215 1033 + 21540570 I
e caeSp111.Scaffold622   253712 794 +   386604 I

a score=2583.000000
s ce10.chrX             4594778 7 + 17718866 GTACTGC
s cb4.chrX              9902248 7 + 21540570 GTACTGT
i cb4.chrX              I 1033 C 0
s caeRem4.Crem_Contig0  1515903 7 -  4500979 GTACTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2829290 7 +  4147112 gtaCAGT
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17739   85893 965 -   130595 I
e caeSp111.Scaffold622   253712 794 +   386604 I

a score=12796.000000
s ce10.chrX             4594785 47 + 17718866 CCTTTT--GTACA-----GAAGAAAAA-GTACGAGGGTGGTTTTCGAT-TTTGTTG
s cb4.chrX              9902255 48 + 21540570 CCTTGT--GACAA-----GGAAAAAACTAGA-GGGGGTGGTTTTCGATATCCAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1515910 55 -  4500979 CCTTCTTGGACAAAAGTGGGACaaaaaaaGATGGGGGTGGTTTTCGAT-TCCATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   254506 47 +   386604 ctttgt--gaata-----aagaaaaaa-agatgggggtgctttttgat-tttgttg
i caeSp111.Scaffold622  I 794 C 0
s caePb3.Scfld02_0      2829298 48 +  4147112 CTTTGT--Gaggg-----aataaaaaagaaattgcggtggttttcgat-tttgttg
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17739   85893 965 -   130595 I

a score=149902.000000
s ce10.chrX             4594832 225 + 17718866 AAAAAC-GT---CATTGAAACGAGCCATTGGGGAGTGATGCTTT---AGAAAAAAAGTATCATTAC-GAATGTAGTTCCGACTCGTTATGGCTTTTTACAC-GTTTCGATGTG--CAATTCAAATGCGGA---TTCA--AATGGAAAACATCAGAGATTTTAAGGGAGTTTCAA-------------------CTAAAAAACAA-GCG-C--GATGGGTG-----GCTT-CGATG-------CGTTTGACATCACGATCA---AACTTTTGGGGTGTAGT------
s cb4.chrX              9902303 245 + 21540570 AAAAAA-GTACCCATTAAAACGAGCCATCTGGGAGTGATGCTGTCCGATAAAAGAAGTATCATTAC-GAATGTAGTTCCTACGCGCTATGGCTTTTTACAAGTTTCCGACGTGCTCAATTCAAATGTGAAGTTTTCGTCTGTGGAATGCACCAGATGGTTTAAGGGtgtttcaa-------------------ctgaaaaacaa-acatCAGAATGGGTG-----GTTT-GAATGGGACACCCAACTGACATCATGATGGTTTTTTC-------TGGTAT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1515965 222 -  4500979 AAAAAACGT---CACTGAAACGAGCCAACAGGGAGTGATGcttt--agaagaaaaagtatcaTTAC-GAATGTAGTTCCTACTCGTTATGTCTTTTTACAC-TTTTCAATGTG--CAATCCGAATGTGAA---TTCA--AATGGAAAACATCAGAGATTTTAAGAgagtttgaa-------------------ctgaaaaacaa-aga-cAGAATGGGTG-----GTTT-CAATG-------CATCTGACATCATGATAG---ATTC-------CGGAAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   254553 213 +   386604 aaaaac-gT---CATTGAAACGAGCCATCGAGGAGTGATGCTTC-----AGAAAAAGTATCATTAC-GAATGTAGTTCCTACTCGTTATGGCTTTTTACAC-GTTTCAATGTG--AAATTTAAATGTGAA---TTCG--GACGCAAAACATCAGAGATTTTGAAGGagtttcaa-------------------ctgaaaaac-a-aca-tcGAATGGGTG-----GTTTCGAATG------------GACATCATGAAAG---AATT-------CGGAGT------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2829346 227 +  4147112 aaaaac-gt---CATTGAAACGAGCCATCTGGGAGTGATGCTTC---AGAGAAAAAGTATCATTTCTGAATGTAGTTCCTACTCGTTATGGCTTTTTACAC-GTTTCAATGTG--CAATTCAAATGTGAA---TTCG--GAGGGAAAACATCAGAGATTTTAAGGgagtttcaa-------------------ctgaaaaacaa-aaa-ccaaatggGTGGTTTTGTTTCGAATG-------GAGCTGACATCATGATAG---AAAT-------TGTAGT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   86858 243 -   130595 aaaaaC-GG---CATTAAAACGAGCCATCGGGGAGTGATGCGTC-----CGAAAAAGTATCATTCCGAAATGTAGTTCCGAGTCGTTATGTCtttttacac-tttttgatGCG--CAATTCAAATGTGAA---ATCA--GACGGAAAACATCAGA--TTTGAAGCGAGTTTTTGTTTATGTTTTCAGAAAGCTTTGAAGAAGAATGGA-TGAATTGGGTA-----GTTT-TATTG-------TGGTTGACATCACGATAG---ACAT-------TACAGATATAGT
i caeJap4.Scaffold17739 I 965 I 2193

a score=-6484.000000
s ce10.chrX             4595057 35 + 17718866 GTATGGGTTGGGTGGGTTACAATTTGAAGCTCGAA
s cb4.chrX              9902548 33 + 21540570 ACATGGGTTGCGTCGAAAGCaa--tgaatttgaaa
i cb4.chrX              C 0 I 16445
s caeRem4.Crem_Contig0  1516187 31 -  4500979 GAATGTGATTTG--GTAGGCAa--ggaatgttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   254766 21 +   386604 ATAT----TGGGTTGTATACac--aaa--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2829573 24 +  4147112 GGATG-AATGggttgaattgag--aaa--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   87101 2193 -   130595 I

a score=-2559.000000
s ce10.chrX             4595092 12 + 17718866 AAAAACAGATAA------------
s caeRem4.Crem_Contig0  1516218 24 -  4500979 aaacatTCAGATTGAAACGGATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   254787 12 +   386604 aacaatagaaaa------------
i caeSp111.Scaffold622  C 0 I 5843
s caePb3.Scfld02_0      2829597  5 +  4147112 aaaca-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   87101 2193 -   130595 I
e cb4.chrX              9902581 16445 + 21540570 I

a score=1028.000000
s ce10.chrX             4595104 25 + 17718866 TTTGAAGACAATATTTTCAGATTCT
s caeRem4.Crem_Contig0  1516242 18 -  4500979 TTTGAA-------TATTTGGATTCT
i caeRem4.Crem_Contig0  C 0 I 8938
s caePb3.Scfld02_0      2829602 23 +  4147112 -ttgaaaac-atgtttctagaaact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   87101 2193 -   130595 I
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I

a score=91.000000
s ce10.chrX             4595129 1 + 17718866 T
s caePb3.Scfld02_0      2829625 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 22669
e caeJap4.Scaffold17739   87101 2193 -   130595 I
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I
e caeRem4.Crem_Contig0  1516260 8938 -  4500979 I

a score=0.000000
s ce10.chrX             4595130 919 + 17718866  
e caePb3.Scfld02_0      2829626 22669 +  4147112 I
e caeJap4.Scaffold17739   87101 2193 -   130595 I
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I
e caeRem4.Crem_Contig0  1516260 8938 -  4500979 I

a score=342.000000
s ce10.chrX             4596049 5 + 17718866 AAGTG
s caePb3.Scfld02_0      2852295 5 +  4147112 aaatg
i caePb3.Scfld02_0      I 22669 C 0
e caeJap4.Scaffold17739   87101 2193 -   130595 I
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I
e caeRem4.Crem_Contig0  1516260 8938 -  4500979 I

a score=-996.000000
s ce10.chrX             4596054 18 + 17718866 GAGGCGAAAAATTTTAAA
s caePb3.Scfld02_0      2852300 18 +  4147112 gatggcgggagtatccga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   89294 14 -   130595 gaggttaaaaaaaa----
i caeJap4.Scaffold17739 I 2193 C 0
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I
e caeRem4.Crem_Contig0  1516260 8938 -  4500979 I

a score=-2526.000000
s ce10.chrX             4596072 70 + 17718866 ---ATAAATAGATGGTAATGTGGTGCTC-----AATAATTACAAATACAAAGTTTCAGAGACCGGCGAGTG-----AATGACG
s caeRem4.Crem_Contig0  1525198 76 -  4500979 ---aTAAATAGTTAATGAAGCGGTACCTATTTAAAACATGGAACAAAGAAAGT----TAGACCGGTAAAAGCaatgaatgaca
i caeRem4.Crem_Contig0  I 8938 C 0
s caePb3.Scfld02_0      2852318 55 +  4147112 ---ataaataaatataaaaataataact------------------GGAAATT----GACACCG---AATACCAGTAATGACA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17739   89308 63 -   130595 acaaaaaatacgtaaataaataatacat--------aacaagaaaaaaaaagt-------accg----GCTCCGCGGATGAG-
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9902581 16445 + 21540570 I
e caeSp111.Scaffold622   254799 5843 +   386604 I

a score=-6870.000000
s ce10.chrX             4596142 40 + 17718866 ATAAATCACAAAACAAATTG-AAAAA----GATTTTAGTTAG---GAA---
s cb4.chrX              9919026 41 + 21540570 atgaaaaacaagtgtaatcgaaaaat----aatCTCAATTAGTTC------
i cb4.chrX              I 16445 C 0
s caeRem4.Crem_Contig0  1525274 31 -  4500979 ---aaaaatcacGGTGACc--aaaat----gaaatcaatt-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2852374 32 +  4147112 ATAAAACATA--------C--AAAATCTTGTATCTTAGTTAT---------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17739   89371 36 -   130595 ATATCAcacaagacaa-----aaaaa----aacattaattaa------CAT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   254799 5843 +   386604 I

a score=98920.000000
s ce10.chrX             4596182 463 + 17718866 TTTGGCGGTTTGAAGGCTTGAATTCCCGGTTGATGACGTACTCCTTGCTCTGCTGCACTTCTCCGGACATAACATCGTCATAGAAAATCACCAAGTGCTGTTTACCCACGAAGCGCTGCGCTTCGGCAAGAGTTTGTTGCAATTGGAATTGCAGGAGGGTTTGATCCTCAAGTCTCTGAAAAATTGGAA--TTCAATTGATGTGTCAGG------TTGTAGCAAAA-----CAATTACCAAAACCCAAAGAGATCCCACATCATCGGCATTGCAGGCGGAACGAGATCGGATGAGGCAGGCGACGTGGTAGACtaaatttttttttaatttatgaaaaagtt-------ttccaaaataaatttaaaaaaCTGACAAGTAGAATCGCCAGCGGATGCGCCGAAAATAGGAGACGCTTGTGATCCTTCTTTGCGC---TTTTTCTCGGAATAACCGTTTGTAGGCCACAGCTCCAACTCGACGTTG-T
s cb4.chrX              9919067 431 + 21540570 GTTGTCCGGTGTGAGGTTTGAAGTTGGAGTGAACCACATAGGCACTGGATTGGGGTGTTTGTCCGGCACTTTCGTCGTCATAGAACATTATAACGTGTTGTTGTCCAACGAACTGCTGAACGACGGCCAGCTGCTCATCGGGATGAAACTGTTTGACACAATGGTCTTCGAGGCGCTAAAAA---------TACATAGTATTT--------TAATCTGAACCATAATATTGAACTTACGAGTCCCCACAAACTGGTAACGTC------GTCGCACATTAATCGATTTCGCACTAAGCATGCCACATGccgaactgaaaaatattattcttagatgaagtatt-------ttttcaaa----------tctctcaCCATTAGCAGTTCCTTCTACTGCAAAAAACATCG-----GATCGCGat-------gattc---ttcttctcactGTACCCGTTTGTCGGCCAGAGCTCGAGTTCAAcacgt-t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1525305 442 -  4500979 -ttgacGAGCGTACGGACAGGATTT---GTTGATGATGTATTCCTTGCTTTGGTTGACACCACCGGACTGAACATCGTCATAAAAGAGGATTAAGTGTTGTCTCCCAACAAAGCGTTGAGCATCGGCAAGTGTTTGCTCaaattgaagtttcaaaacggcAAGATCTTCGATTCtctgaaat---------gatttttgatttctataGGGCAATTTCAATGACAA-----AACTTACCAAAACCCATAATGTGCCAATATCATTGATGTCACACGCGTAACGATTTCGAATAAGGCTGGCAACGTGATGgactaaaaaaaatcattctgaTGACAgctgtt-------tttttgta----------aaactcaCAAGTGACGTCTGATGAAGTTGCACAATACATT------GCTTGAGACACTG---GAATCTGTTTCTTCTGGACGAAACCATTGGTTGGCCAGATCTCCATCTCTACCTgg-c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   260642 454 +   386604 TTTGACGGTTGTTTGGGTTGAATCCCGTATTGATAACATATTCCTTGCTCTGCTCAACATTACCAGCGTTTACATCGTCGTAGAAAATGATCAGATGTTGTCTGCCCACAAATTCTTGAGCTTCGGCAAGTGTGGATTGTAAATCcacttttctgatttcgaaattctccagtttctgaaaagaaaaacggtaCATTTGCTCTGTC---------GTTAGCAGAAA-----AACTTACCAAGACCCAAGCTGTTCCGACGTCACGTGCATCGCATGTTGAACGAGTGCGTACAAGGCCTAAGACGTGGtagactgaaaaaa-----tataggtTAAACAATTGTTAAAACTACAGAA----------AAACGTACAAATAGTGTCCCCAGATGAGGCACAGAAGAATGGAGTTGCTTGACTTCCCTCCAATCGT---TTCTTCTCAGCATACCCGTTTGTTGGCCACAATTCTAATTCCACTTCGA-
i caeSp111.Scaffold622  I 5843 I 79
s caePb3.Scfld02_0      2852406 453 +  4147112 TTCGGCGATTGATAGGGTTATATCCCTTGTTAATGACATATTCTTTGGTCTGAGTCACTTCACCCGCGTTGACATCATCATAGAACATGATTACATGTTGATGTCCTACGAATTGTTGTGCATCAGCCAAGGTGGTTTGGAGGTCAAACTTTCTTAGATCGAGATTGTCCAGCCTCTGTAAAATA------TATAATTGAGCTACCACAAAGCTTGTGAGCCG--A-----AACTAACCAAAACCCAGACTGATCCAATGTCGGAAGCATCATACGACAAACGAGATCGGACAATACCCAATACGtgataaactgaaaaag----ttgttgatTCAGAAAGT-----AACTTCATAATA----TGCCAAACTCACGAGAAGTAGCTCCTGATGTTGCATAGAACAACGGAGTGGTCTGAGCTCCTT---GGCCC---TTTTTCTCGGCGTATCCATTGGTTGGCCACAGTTCCATCTCGACAGCG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   89407 459 -   130595 TTGAACGTTCGGTTGGTTTGAAATCCTGATTGATAATGTATTCCTTACTCTGTTGGGTTTCTCCCGACATCACATCATCGTAAAAAATTATCAAGTGTTGTTTTCCAACAAAACGTTGTGCTTCTGCAAGAGTTTGCTGAAGTTGAAATTGCATGAAAGTTTGATCATCGAGGCGCTGCAATTGGTAAA--TAAAATTAACTTTAAAAAGGGTCGGTT-------A-----AACTCACCAAGACCCACAGAGATCCCACATCGTTGGCATTAAATGTAGACCGAGATCGAACGAGACACGCGACATGAtaaactgaagaaaaaaattattaagtaaattttt-------ttcaaaaa---aattaattgttttacATGTAGAATCTCCACTGGAAGCGCAATAAATAACAGTCGCTGGAGTTCCTTGTTGGCGC---TTCTTTTCAGCGTAACCATTTGTCGGCCAGAGCTCTAATTCCACATTT-C
i caeJap4.Scaffold17739 C 0 C 0

a score=-20297.000000
s ce10.chrX             4596645 98 + 17718866 TCTGAAAAAAAAAATTCAGTGGTA--ATAGAATAATACCAAAACTAGC----------------TCACATTTATTCTTTCCGTTCCAGTTCCAGTTCCAGAG--GAAATCGATCGAAA
s cb4.chrX              9919498 60 + 21540570 tctgaaaat-----------------ataaattgttgtttgaaattgc--------------atttttgttTAAACTTACCGAT---------------------------GCCGACG
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1525747 74 -  4500979 tctgaaaac--------------a--ataaatcatTATGAAGAACTTCTGgggaatttcaaaacttacattGACTCTTCCTTGT----------------------------TCGATA
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0      2852859 20 +  4147112 ----------------------------ACAGCCTCTGGACGAGCTGC----------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17739   89866 81 -   130595 CCTGAAAAT--------------AGTACATACTtttatctagaaaaaa---------aagaaactaacATTTTCCCTTTCCTGA--------------AGAGCAGAAGCTGCTCTAAC
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   261096 79 +   386604 I

a score=-81486.000000
s ce10.chrX             4596743 243 + 17718866 TGGCTCA---------ACAGTTTCCGGCC------GTGT---AACTTGTGTAGTCGCAACTGAGATCGCAATTGGTG----TAGCTGGTGCC------------------GGTGCTT--------GTTGAACAACTGAT-----TGAGGAGCTACTG--TAGG------------------GGCTCGCGGGGC--------GACCGGTGTCTGAGCG--------GAAGGGACTCGCATCAGAAGGTTCTGTTGAACCACTTGTTGCTGTTGTTGAGCCAACTGAG--------------------------CCTGCTGCTGGAGCCAT-------------------------GCACTGGAAACATTTGGCACTAGGCCTTG
s cb4.chrX              9919562 177 + 21540570 TGGCTGA---------GCAGCTT------------GAGTAGCAGGTCGTGGTGTTGGAACAACGATAGC---TGGGGTACCGGTTGGGACAA------------------CAGGCTT---------------------T-----GGTACTGTAAC--------------------------AGCCTGTGGAA---------GA--GGTGTCTGAGCA-----GGAGCAGGTGTTCTC---TGTGGAAGTGGTTGA------------------------------------------------------------GGAGCTGGAGT--------------------------------TTGCGGCAAAGGCGTAT-GACCTGC
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1525826 228 -  4500979 CGGATGA---------ACAATTT------------GAGG---AGGGTGTTCAGTTGAAGCTGGGGTTGC---CGGAG----GATTTGCAGCA------------------CGAGCTTGAGGTGTGGCTG-----CTGGC-----GGCACAGCAACGG--GAATACCAGCTACAGGTGCAGGAGTTCGTGGAACACCAACTTGA--GGAGTTTGAGCA-----GGTGCCGGTGTTCTC------AAAGCTGTTTGAC-------------------------TTGCA-------------------------ACTTGTTGTTGGAATAAC------------------------TGCTGTTGCAGCAATTGCAT-------TGC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622   261175 267 +   386604 TTGTTGA---------ACAGCTT------------CAGT---TGGTGCTGTTGTACgagctggaggagc---tggag----gagctggagca------------------ttttgtt--------gctg-----atttt-----gaagaagttgTTGTTGACC------------------GG--GATGCAA---------AA--TCTGTGGAAGCATATTTGGTGGAAGCATTCCT---------TGTTGTTGACGCATTTGCATTTGTTGTTG---CATTTGCATCATTATCTGttgagcttgggcttgcacttctgcttgagtccg--ggcttgagcctgagcctgagcctgggcttga-gcatgtgctt---gagcttg
i caeSp111.Scaffold622  I 79 I 118
s caePb3.Scfld02_0      2852888 220 +  4147112 TTGCTGACTGGTGCTTGCAACTT------------GAAT---TGGTTGTGGAGCAATGGCTGCCGGTGT---TGGTT----GATC----GAC------------------TTGTCTT--------GCTG-----CCACT-----GGTTGAGCTGTCG--GAGC------------------GATTGGTGCAG---------GA--GCTGGGGGAGCC---------AAGGCGCT--------------TTGTTGACCGA---------------G---CAGTTGCA-----------------------TGAACTGTTGCTGGAGCCAGTTGGGTGGGACTCCGGCCTGAGCAAgctgttgctgcaattgct------gctgc
i caePb3.Scfld02_0      I 9 I 20
s caeJap4.Scaffold17739   89947 225 -   130595 TGGCTCA---------ATGGTTTCCGGCCGGACTGGTAG---AGTTTGTTGAGCAGCAGATGGAGCAGC---TGGAG----CAACTGGAGCAGGTTGAACCGAAAAAACTTGTGCTT--------GCAC-----CTGCTCAGGAGGCTGGGCCACAA--CACG------------------TTCTTGCGGAG---------CA--GCTTGTAAGACA-----ACTTGTGGCGCTTCT------TGAACCTGTT-------------------------TAGGAGCA------------------------------TAACCGGGATGAG-----------------CCAAAACTGGAGTAGCTGCAGGCGG------------
i caeJap4.Scaffold17739 C 0 C 0

a score=4780.000000
s ce10.chrX             4596986 86 + 17718866 ---------TTGAGCCAGCTGTTGCTGTTGCTGCAT-TTGAATTtgctgctgctgttgttgatgctgctgatgctg---------ttgcATTTGTAATTGCTGCT
s cb4.chrX              9919739 89 + 21540570 ---------TTGAGCCATCATTTGCTG------CAT-TTGCATTTGCTGTTGGAGCAGGTGGAACTGCTGAGGATGGAAGCCAGGAGCCATCCACGCTTGCTGCT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0  1526054 74 -  4500979 ---------TTGAGCCTGCTGCTGCTGCCAC-ACAT-TTGGAATCATTCCTTGAGCCAATTG--CTGTTGGAGCTG------------------CATTTGTTGCT
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0      2853128 74 +  4147112 ---------ttgcaactgctgctgttgttg---cat-ttgctgctgctgttgcaactg------ctgctgttgctg------------catctgttgttgttgct
i caePb3.Scfld02_0      I 20 I 12
s caeJap4.Scaffold17739   90172 86 -   130595 TGGAGCAAGTTGAGCCTGTTGAGCCTGTG----CATATTGCTGCTGCTGTTGAAGCCA------TTGTCCAGTCTG---------ACCCGCTTGTTGTTGCATTT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   261442 118 +   386604 I

a score=-14998.000000
s ce10.chrX             4597072 124 + 17718866 GAAGTTG----------GTGCTGCATCAGTTGTTG------TTGTTGAAGTTGAAGCTGCATGAAAAGTTGTT---------GTTGCTGGGCTTGA------------------GAAGTTTGCTGGGATTGTCCTGCTTGTT---------------------------------------------GCG------GTAGCTGCATTCCAGGCATTCC
s cb4.chrX              9919837 130 + 21540570 GAGCTTG----------CTGATGCATCATCGCTTGAAGCATTTGTTGCTGTTGAACCTGATTCAAGAACTGTTCATGGGCAGACGGTTG---CTGA------------------GATCCTGGTTGTTGAACTCCTGGTTGCT---------------------------------------------GCGGTGCTCCGGGCGGTAT------------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1526134 115 -  4500979 GGAACTG----------TTGATGCACTAGTTGTTG------TTGCTGCATTTGTAAATGCATTAACAACTGCT---------GCTGTTG---TTGA------------------GCACTTTGAGATTGTGCCGTTGCTTGCT---------------------------------------------GTGCTACCGGTTGTGCTGC------------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   261560 143 +   386604 GGAGTTGGCGCCTGTCTTTGTAGCGGCATGTTTCT------TTGATTGATTTGCTGATTCATCATCAATTGCT---------GCTGTTG---TTGC--------------------AACTGGT------TTTGTTGCATATT-TGGAGCAGGAGTGT------------------------------GAGCAACTGGTGGCATCATTCCAAGCATTCC
i caeSp111.Scaffold622  I 118 I 90
s caePb3.Scfld02_0      2853214 190 +  4147112 gaagttg----------ttgttggagaatttgttg------ttgctgcatttgcAACAGCATTTGCTGATGCT---------GCTGTTG---ATGATGCACACTAGGAGTTGGTGGAGCTGGTGTCCGGTTTACTGGAGGCTGTGGAGCCGGCGTATGTTGAACCGGTGCGGGAGTAGCGAGGACACGAGGAGCTGGTGTAGCCATTCCTGGCATCAT
i caePb3.Scfld02_0      I 12 I 3
s caeJap4.Scaffold17739   90258 124 -   130595 ---GCTG----------TTGGTA------------------CTGCTGCATCTGGAGTTGTAAAAGTAATTGCT---------GTTGGTT---TTGC--------------------AGCTGTTGTGGAGTTTGCTGCGGTGG-TGGAGCTGGAGTTT------------------------------GTGGTGGCGGCTGCGTTCCTTTTGCCATTCC
i caeJap4.Scaffold17739 C 0 I 2

a score=-18202.000000
s ce10.chrX             4597196  72 + 17718866 GAGGCCT--TGTAA-------CTGTTGCATTC-------------------------CCATCCCAG---------------TGG------------GCATGCCTTGTATTCC------AGCCGGCATTCCTTGTTG------------AAC
s cb4.chrX              9919967  66 + 21540570 GAATCCTGGTGCAA-----------TGAATCCGT-----------------------GTAATCCAG---------------CAG------------GCATTCCTGGCATT------------GGTGTCATTGGTGG------------CAT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0  1526249 117 -  4500979 GGTTTGTGGTGTAG-------CTGTTGAAGCCTTCGGCGTAGGAACTGGAGGTGGTGGCATTCCAG---------------TTGCTCTCTGTTGCATCATTCCAGGCAGT------------TGCATTCCTGGCGGAAAGCCTGGGTACAT
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0      2853407  78 +  4147112 ATATCCGGGAATAGTTGCAGGCTGTTGAGCACCA-----------------------GCAGGCAAG---------------TTG---------CCAGTATT--TGATTTT------------GGCGCTGGTGGTGG------------CAT
i caePb3.Scfld02_0      I 3 I 13
s caeJap4.Scaffold17739   90384  67 -   130595 ---------------------------------------------------------GCATCCCCGGCATCATTGGCATCATTG------------CCATTCCCGGCATCACTTGTAAACCTGGCATTCCTTGTGC---------------
i caeJap4.Scaffold17739 I 2 C 0
e caeSp111.Scaffold622   261703  90 +   386604 I

a score=-32690.000000
s ce10.chrX             4597268 159 + 17718866 GGCTTGCTGTGACACCGCT-G------GTTT---CGGAGTTCCTTGTTGCATACGAGCGGCAAACT---GTTGCATTTGCAA--CTGTT----GC---ATTTGCA---------TCTGCTGC------ATTTGTTGGACTTG------TTGAGCATGCTGCATTTGAACTTGAGACATTTGTTGAAGC--TGTTGCATTTGCTG
s cb4.chrX              9920042 141 + 21540570 -----GGCGGGAAGT-----G------GCATCGCTGGCATT---GGTGTCAT---AGGTGGAA------GTGGCATTGGTGTCATTGCTCTCATCTTCATCAGCTCGACTTGTTCTTGATGCTTCGCAATCTGCTTGATTTCCTCTTTTTG---ATGTTGA----------GGTAGATCTGG----------------------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0  1526378 156 -  4500979 -----GCCCTGAAGG-----GCTTGTTGCATTCCAGCAATTCCAGGTTGCATTTCGGGAGCAACTCCTGGTAGCATTGGAGT--TTGTT----GCCTGATCTGCTCCACAATTGCATGCTGC------ACTTGCTGGGCTTGAACTTCTTGAGCATGTTGCATC------TGGAACATTTGGAG--------------------
i caeRem4.Crem_Contig0  I 12 I 68
s caeSp111.Scaffold622   261793 147 +   386604 GACTAATCCGGGTGTCATT-G------GCAT---AGGAGTTCCCTGCTGCAAACGTGCCAGAAACGCTTGTTGTACTTGCAT--TTGAT----GC---AT---------------TTGTTGC------AATTGTTGAAGCTG------TTGCATCTGTTGCATGCTTA-GTTGAGTACCCGTT----------TGTCTCTGATG
i caeSp111.Scaffold622  I 90 I 32
s caePb3.Scfld02_0      2853498 157 +  4147112 GGC--ATCGGGGTAGCACCAG------GCAT---TGGGGTTCCTTGTTGCATACGGGCTACGAATGCTTGCTGCATCTGCAA--CTGTT----GC---ATCTGCT------GTGCTTGGTGC------ACTTGTTGTATATG------CTGCATGTGCTGCATACTT---TGAAGCTGCTGTTG------CGGTGTCAGCGGTT
i caePb3.Scfld02_0      I 13 I 30
s caeJap4.Scaffold17739   90451 128 -   130595 -------------------------------GCCAGGC------TGTTGGGTACGAGCAT---------AATGCATTTGCAT--CTGTT----GC---ATctgtt------gcattttttgc------atctGTTGATATTG------CTGAACTTGCTGAATCTGT---TGCAACAATTGTTGCTGTTGCATAACCATTCCTG
i caeJap4.Scaffold17739 C 0 C 0

a score=-4266.000000
s ce10.chrX             4597427 20 + 17718866 CATTGAAAGAGGTTGACCCG---
s cb4.chrX              9920183 15 + 21540570 -----CATGAGGTAGATCTC---
i cb4.chrX              C 0 I 38
s caeSp111.Scaffold622   261972 15 +   386604 -----CATGAATATGAGCTT---
i caeSp111.Scaffold622  I 32 I 9
s caePb3.Scfld02_0      2853685 15 +  4147112 -----TATAAGCCATagctt---
i caePb3.Scfld02_0      I 30 I 9
s caeJap4.Scaffold17739   90579  9 -   130595 --------------TATTTCCAG
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1526534 68 -  4500979 I

a score=40498.000000
s ce10.chrX             4597447 486 + 17718866  
s cb4.chrX              9920236 498 + 21540570  
i cb4.chrX              I 38 I 124
s caeRem4.Crem_Contig0  1526602 476 -  4500979  
i caeRem4.Crem_Contig0  I 68 I 16
s caeSp111.Scaffold622   261996 456 +   386604  
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0      2853709 480 +  4147112  
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17739   90588 483 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-8670.000000
s ce10.chrX             4597933 52 + 17718866 GAGCCCTGCAAAAAA---------------ATTCTAATTAA--TATGTACAATTATTT---------------AGAC--------TCACGGA
s caeRem4.Crem_Contig0  1527094 62 -  4500979 CGACTCtgtaa-------------------attgaaattg---tttagATATTTGTTTTcggaaaacattcaaaaac--------taacCGT
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold622   262452 51 +   386604 gttctctgaaa-------------------ataaaaattg----ttagattatca------------------aaatggaaatggtGACTTA
i caeSp111.Scaffold622  C 0 I 38
s caePb3.Scfld02_0      2854189 55 +  4147112 GAGCTCTGTAATAAAGGT---------TTtatggaaattgt--ttttgatgattg------------------aaaC--------TGACCTA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17739   91071 73 -   130595 GATTcctgcaacaacaacaacaaaaaataaatataaataaaacattgtgtaatttcttttta-----------aaac--------atACATA
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9920734 124 + 21540570 I

a score=-4672.000000
s ce10.chrX             4597985 32 + 17718866 ---------------TTCACAGCCATTTGTGGATTTC---------------------------CTTGATTCAA
s caeRem4.Crem_Contig0  1527156 31 -  4500979 ---------------TGCATGACCAGTTGGGCATTCA---------------------------GTTGATTGA-
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0      2854247 29 +  4147112 ---------------AACAAGACCTGTTGAG---TCT---------------------------GTGGATCCAA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17739   91144 73 -   130595 TTCATTTGCATCTGCTGCGGTAGCATATGAGGGTTCATTCCTTGAACAGAATTCATATTCTGAGCTGGATTGG-
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9920734 124 + 21540570 I
e caeSp111.Scaffold622   262503 38 +   386604 I

a score=-5545.000000
s ce10.chrX             4598017  7 + 17718866 CATTTGC-------------------------------------------
s cb4.chrX              9920858  7 + 21540570 CCTTTGA-------------------------------------------
i cb4.chrX              I 124 C 0
s caeRem4.Crem_Contig0  1527191  7 -  4500979 TTCTTGA-------------------------------------------
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0      2854276  7 +  4147112 AACCTGC-------------------------------------------
i caePb3.Scfld02_0      C 0 I 77
s caeJap4.Scaffold17739   91217 50 -   130595 CATTTGGAGCAAGACCAGAAACAAGACCTGGATGTTGACCTTGCCCTGGT
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   262503 38 +   386604 I

a score=-3165.000000
s ce10.chrX             4598024 13 + 17718866 G--------CCGGCATTGGAA
s cb4.chrX              9920865  5 + 21540570 G---------CAGC-------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1527198 14 -  4500979 GTTAGAGAGCCAGC-------
i caeRem4.Crem_Contig0  C 0 I 6
s caeJap4.Scaffold17739   91267 13 -   130595 --------ACCGGAGTTGGAG
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2854283 77 +  4147112 I
e caeSp111.Scaffold622   262503 38 +   386604 I

a score=-9827.000000
s ce10.chrX             4598037 34 + 17718866 CATT----------------------AACTTGTCCTGGATGTCCGACTGGAACTTG
s cb4.chrX              9920876 26 + 21540570 GGCTT--------------------GTATATGTTTAATAAGTTCCG----------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1527218 24 -  4500979 TGCC----------------------AATGCATTCGGTTGGTTTAG----------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   262541 34 +   386604 CACC----------------------AACTTGAGAAGAAGGTCCAGCCTGAGGTGG
i caeSp111.Scaffold622  I 38 C 0
s caeJap4.Scaffold17739   91280 52 -   130595 ----CAAGTCTAGTAGCGATTTGAGAAACTTGTTCAGGAGCTGCTATCGAAGCTGG
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2854283 77 +  4147112 I

a score=-28015.000000
s ce10.chrX             4598071 388 + 17718866  
s cb4.chrX              9920902 467 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1527242 423 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   262575 301 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2854360 394 +  4147112  
i caePb3.Scfld02_0      I 77 C 0
s caeJap4.Scaffold17739   91332 652 -   130595  
i caeJap4.Scaffold17739 C 0 I 1087

a score=-8386.000000
s ce10.chrX             4598459 45 + 17718866 TATTCAAGCTATATTTTTTGTGTTCACGTGCATG-------CAATAAATCAA---------------------------
s cb4.chrX              9921369 14 + 21540570 -------------------------------ttg-------gaaaagattAA---------------------------
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0  1527665 14 -  4500979 -------------------------------ttg-------aaaaaaattaa---------------------------
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold622   262876 19 +   386604 -------------------------------aca--agtgtAAGGAAATTGT---------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2854754 48 +  4147112 -------------------------------ACGACACTATGAATAAATCATCTTCAGAAAGAACGTTCACTATATTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   91984 1087 -   130595 I

a score=-8517.000000
s ce10.chrX             4598504 40 + 17718866 -----------------GTCACTATAATTGTATAAATGGGT-------------TATAACATTTAAGGGG
s caeRem4.Crem_Contig0  1527695 33 -  4500979 ----------------AATGATT---AGTTTCTAAAAGGGA--------------GTAATATATCC----
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold622   262895 27 +   386604 TGAACT-----------GTGATC---ATTGTGCTGATCGAA-----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2854802 63 +  4147112 TTAACTGAGTAACCTACGTAACC---CGTGTATGAGTTCAAGGATGGGCAGAAATGTAATTttgta----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   91984 1087 -   130595 I
e cb4.chrX              9921383 55 + 21540570 I

a score=-2767.000000
s ce10.chrX             4598544 7 + 17718866 CACACGA--
s caeRem4.Crem_Contig0  1527728 7 -  4500979 CACACCG--
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622   262922 2 +   386604 -----GA--
i caeSp111.Scaffold622  C 0 I 20
s caePb3.Scfld02_0      2854865 7 +  4147112 actttga--
i caePb3.Scfld02_0      C 0 I 216
s caeJap4.Scaffold17739   93071 7 -   130595 --cacaaaa
i caeJap4.Scaffold17739 I 1087 C 0
e cb4.chrX              9921383 55 + 21540570 I

a score=-2682.000000
s ce10.chrX             4598551 20 + 17718866 CATTATGGATTAGTA-----------AATTT
s caeRem4.Crem_Contig0  1527742 20 -  4500979 TCTTGTAAATAACTA-----------AAACA
i caeRem4.Crem_Contig0  I 7 I 4
s caeSp111.Scaffold622   262944 19 +   386604 ---CATGAAACGTTATA---------AAACT
i caeSp111.Scaffold622  I 20 I 13
s caePb3.Scfld02_0      2855088 28 +  4147112 ---CATGAGTTATTAGATAAAGACAGAAACA
i caePb3.Scfld02_0      I 216 I 27
s caeJap4.Scaffold17739   93078 20 -   130595 caacaacaacaacta-----------tGTCT
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9921383 55 + 21540570 I

a score=90832.000000
s ce10.chrX             4598571 331 + 17718866 AAGAAGCGTACGGACCATGTGACCTTGCAGCTGATGAAGGGGCAAAGGTGGTTGGACAATAGACATTTGCTGTAAGAGATTAGTTA--------------GTATTAGATCAA------------TGGAAACGAGATAGTT---------CTTGAAGTAAAGGAGAGGAATGAATTAATTC---TCTTACCACGTTGGACATTTTGGCCTTCTTTGGCTTGGGTGTTGCACGAG-CAGCTGCCGCAGCTGAATGTTTTC--------CGGGGCCACGTACTGGCTGTTGTGGAGTGGCAAACT------GCTGCGTTGGCTTCT------GAGGAAC---------TGCAATTCGAATCGACGCCATCTTCTGCGACTTG---ATGCGGGCACGATCTGAAA--T----------------
s cb4.chrX              9921438 370 + 21540570 AAGAAGCAAACGGACCAGGTGGCCTTGCAATTGATGAAGTGGCTGGGGTGGTTGGACAATGGACATTTGCTGCAAGAGATTAGTAAT-------ATATACTAATTAAAACAACATCTCGATCTCTCGTATTCTGTTACTTGTTACAACACTCG--CCACCACAATAATATAAATTGAAT----ACTCACCACATTCGCCATTTTGATCTTCTTCGGTTTTGGTGCTCCACGTG-GCGTTGCA------GGGTGCTTTC--------CTC-GCGGTG--CCGGCAGCTGCGGTTTGGCAAAGTGAGGTGGAGGAGGTGGTTGTGGCTTCTGTGGGACTGGAGCTCGCGCGAGGCG---GGCCGACAttttttttGCCGTTCCGAGTCGAACCCCATCTGAAAGGA----------------
i cb4.chrX              I 55 I 3
s caeRem4.Crem_Contig0  1527766 329 -  4500979 AAGAAGCAAACGGACCATGTGACCTTGCAATTGATGAAGAGGCAAAGGTGGCTGGACAATAGACATTTGCTGTAAGATATTAGTAG--------------GTATTATAACAA-------------CTAATTCTTCTACT----------ATTA--gcacaagaaaaaaaagaaaagtgt----taTTACCACATTCGAGATTCTCGGTTTCTTCGTTTTAGGAGTTGCACGAGCTCCTTGCA----TTGAGTGTTTTCCTGCTCCTCTC-ACAGCG-------GGCTGCGGTGTTACAAACTGCGGTTGTGGAGCTGGTTTTG------GTGGGAC---------CGCGATGCGAatagttgacattttttgagtcttC---AGACGAGCACGAACTGTAA--A----------------
i caeRem4.Crem_Contig0  I 4 I 3
s caeSp111.Scaffold622   262976 300 +   386604 AAAAAGCAAACGGACCATTTGACCTTGCAGTTGATGTAGTGGCAAAGGTGGCTGGACAATGGACATTTGCTGTAAGAGATTAGTAGA--------------tgtcacaaaaa-------------------atgtta------------atcG---------AGTGTCTCAAATGTTGTTTTAACTTACCACATTggacattttcattttcttggGCTTTGGTGGTCCACGTG-GAGT---------------CTTTC--------CTTGGCCACGAACTGGTGGGAGTGGAGTAGCAAACT------GTGCCGTGGGTTTCG------GTGGAAC---------AGCAATCCGAATGAGTTGCATCTTTTGCGATTTG---ATACGGCTACGCActgaaa--a----------------
i caeSp111.Scaffold622  I 13 C 0
s caePb3.Scfld02_0      2855143 328 +  4147112 AAAACAAAAACGGACCATTTGACCTTGCAGTTCGTGGAGTGGTAATGGTGGTTGTACAATGGACATTTGCTGTAAGAGATTAGTAAATAAAACTATATA-GTGTGAGAAAAA-------------------ACGTTAT-----------GTCG-CTAATAAAAACGACGAAAATCGAGAC---ACTCACCACGTTAGAcaacttttgctttttcgGTCTCGGGGCACCATGGG-TACC---A------GTGTGCTTTC--------CTCGGCCACGCCCTGGTGGATGCGGCGTAGCAAATTTGG---GTGCTGGTGGTCTCA------ATGGAAC---------AGCAATTCTCATGGCAGCAATCTTTTGAGTTCTG---AGACGGTTACGCACTGAAA--G----------------
i caePb3.Scfld02_0      I 27 I 33
s caeJap4.Scaffold17739   93098 328 -   130595 AGAATGTGAACGGACCATATGAGTTTGAAGTTGATGGAGAGGTAAAGGTGGCTGGACTATGGACATTTGCTGTAAGAGATTAGTAC--------------GTGTTGGAAAGACCAAAGACAGAAAATAAAGCAGGTAT-----------ACTG------ATTATTAGCACACATTAAT-----TCTTACCACATTTGTCATCTTCGGcttctttggttttggagGACCACGAG-GACC------------------TT--------TTGGACCACGGGTTGGCGGATGAGGAGCCACAAACT------GTGGAGGcggttttg---------gaat---------agaaatgcgGATATTGGCCATTTTTTGCGACTTG---AGGCGAGCACGAtctgcaa--gaaaaaaataaacaaat
i caeJap4.Scaffold17739 C 0 C 0

a score=-20790.000000
s ce10.chrX             4598902 35 + 17718866 TTGTTTATTTTT----------------------------------------------------------GCATTAAACTTTGATGGGGTTTC
s cb4.chrX              9921811 47 + 21540570 GGAATCGTTGTAGGAAGCGCGG------TCGGAAACGAGAGG------------------------AAGCGCATGAA----------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1528098 31 -  4500979 ACGTTCATTGTA----------------CTGgtattgaaa------------------------------acaataa----------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   263276 33 +   386604 ----accttttt----------------ttgcTATGAGAA------------------------------ATATCTAAATTTC----------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   93426 62 -   130595 -------------tagaagaggaagaaaatgaaaatgaaaaagaaatagaaaaacaagTTATTACTAAATACAGT------------------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2855471 33 +  4147112 I

a score=12075.000000
s ce10.chrX             4598937 136 + 17718866 AACTCACATTTTGCTCGTTCCATTTCAATCTTTTTGTCGACATACTTCCGACGAATCTTCGGCGGAATGTTGGGCACGAATAT-GTTCTTTTTCTT-----TCGTGTTT-----CACGTTTTTTGTGCGGGGC---TCTTCTTATAACAG
s cb4.chrX              9921858 136 + 21540570 AACTCACGATTTAGTCTTTTGAGCCGGGTGATGTCCTGCATAAACTTCTGTCGAACTTTCATCGGAATGACAGGGATGAAAAGATCTTCTTGTTTTGGAATAGGTGGTC--------GTTGCTCACGTGGCAT---TTTCTCA---GTTG
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1528129 132 -  4500979 cacTTACGCTTTGTCTTATCCACCTGAAGCTTTTTCTCAACATACTTCCGACGAACAGTTCTTGGAATGTTGGGTATGAACAT-TCTTCCTTTCTTGTAA-AGATGATT---------TTTCTTGTACAGTAC---CTCATC----GATG
i caeRem4.Crem_Contig0  C 0 I 95
s caeSp111.Scaffold622   263309 136 +   386604 ---TTACTCTTGAGTTTCTCCAACTCGGTTTTCTGTTCGAAATATTTACGGCGAATTTTGTAAGGAATGTTTGGAAGAAAGAT----------CTTCGAA-AGGCCTTTCGGTTCACGTCTCTTGTATATTGGACATTGAGCATCTGAAG
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0      2855504 136 +  4147112 AACATACTTCTCAGGCGTTCCAATtcaatcttcttctcaaaGTACTTCTTACGAATCTTTGATGGAATATTTGGAAGGAATAC----------CTTTGAG-TGAAGGCGAAGCACACGCTTTTTGTAAAGCGG---TTTTCCATTCGAAG
i caePb3.Scfld02_0      I 33 I 9
s caeJap4.Scaffold17739   93488 132 -   130595 AACTCACATTTGGCACgctcaatttcaattttcctcTCAACATATTTTCTTCGAATCTTGAGTGGAATATTGGGCATAAACAG-TTTTTCCCTTTTGCGA-GGCTCTCT-------CACTTCATTTGGAACAC---TTGTCG----GA--
i caeJap4.Scaffold17739 C 0 C 0

a score=-21450.000000
s ce10.chrX             4599073 86 + 17718866 ATCCATCTACGTTGTCATACACCATATCTG----AAACCAAAATACAGGTACAATTATCGCCTAATTTTCAAAGCATACCTTCATC--------AGAA
s cb4.chrX              9922004 89 + 21540570 TCCCATG-------TCTCGCTCCGCTTCTGtaataaaaaagaatgaacACCTTATCAAGGTAAACACA--AAAACATACCTtccgcttcttcttctga
i cb4.chrX              I 10 I 4
s caeSp111.Scaffold622   263455 77 +   386604 TTCCATC-------ACGTACTCTCCATCTG----AAAAAGCAATACTTAGACTAAGAATACTTATAAT--TTATTCTACCTTCTCc--------caaa
i caeSp111.Scaffold622  I 10 C 0
s caePb3.Scfld02_0      2855649 67 +  4147112 CTTCCTC-------TTCTGTTTCC--TCTG----AAAAGTAAATTc-taatttatcaat-ttcaggAT--ATCATTTACCTTC--------------A
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17739   93620 51 -   130595 --------------------CTTTTACGTG----GATTCAAAAGAT---CGTCATCGCTGTCCATCTC------GCTGTCATCA--------------
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1528261 95 -  4500979 I

a score=11919.000000
s ce10.chrX             4599159 557 + 17718866  
s cb4.chrX              9922097 572 + 21540570  
i cb4.chrX              I 4 I 146
s caeRem4.Crem_Contig0  1528356 518 -  4500979  
i caeRem4.Crem_Contig0  I 95 C 0
s caeSp111.Scaffold622   263532 522 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2855716 513 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   93671 653 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-9909.000000
s ce10.chrX             4599716 51 + 17718866 CC--CATGATCGTTGATTCGTACAGTTTCTACTGGAGCACGACTAATTGGAGA
s caeRem4.Crem_Contig0  1528874 25 -  4500979 GT--CATCCTCGTTTCCACGAATGGCT--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   264054 36 +   386604 ----CCTTTCTCCCTTGCTGCTTCCACCCCAC-------------GTTGAGAA
i caeSp111.Scaffold622  C 0 I 72
s caePb3.Scfld02_0      2856229 48 +  4147112 GCAACATTTTCATCTGCCCGAATCGGTTCGATTTG-----TTTTGGTTCGGAT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17739   94324 51 -   130595 GT--CACTGTCATTGCCTCTTGCCATTTCCACTTCGTCGCGGTGGTTTGGAGA
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-7611.000000
s ce10.chrX             4599767 46 + 17718866 TCGAGACCGAGATTTATCAATGTTG-CATCGGTTCGGTGGTCTATTG
s caeRem4.Crem_Contig0  1528899 21 -  4500979 ----------------TCAATGTTATCATCT----------TCATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2856282 25 +  4147112 --GAGAGGAAGA---GTCTGGGGCA-CATCC----------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17739   94375 13 -   130595 ----------------TCGAGATTG-TTTG-----------------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I
e caeSp111.Scaffold622   264090 72 +   386604 I

a score=-2433.000000
s ce10.chrX             4599813 21 + 17718866 ATGAGAGCTCCGTCAGATCCC-
s caeRem4.Crem_Contig0  1528920 15 -  4500979 ------GTCAAAACAACGTCC-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622   264162 21 +   386604 GTGAAAGCTTCAGCAGTTTCC-
i caeSp111.Scaffold622  I 72 I 50
s caePb3.Scfld02_0      2856307 15 +  4147112 ------GTTGGAGCGGATCCC-
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold17739   94388 11 -   130595 -----------GAGAGATCTTT
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-380.000000
s ce10.chrX             4599834 25 + 17718866 AATCGTTCACGTATTACGACTGAAG
s caeJap4.Scaffold17739   94399  5 -   130595 --------------------TGGAA
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2856322 21 +  4147112 I
e cb4.chrX              9922669 146 + 21540570 I
e caeSp111.Scaffold622   264183 50 +   386604 I
e caeRem4.Crem_Contig0  1528935  3 -  4500979 I

a score=-22867.000000
s ce10.chrX             4599859 85 + 17718866 --GTGATGAAGGTCT-------GTCATAGGAGCTGCATG--GCCTAGACGGGCGGCGTGTGGCGGGGGCACTAG---ATTTA--GATGAGACAGTGGAAG-C
s caeRem4.Crem_Contig0  1528938 59 -  4500979 --GGGATAGAAATGT-------CCTGAGATGTTGTTGTG----------------CCTTCAG---------------ATTCA--GAGACCACTGCAGAGGT-
i caeRem4.Crem_Contig0  I 3 I 15
s caeSp111.Scaffold622   264233 80 +   386604 --GTCATGTACATCT-------ACAGCCTTCTCTTCATA--AACAGCTGAAGGTTCTTGGAC-------AGCAGATGATTCA--GAAGTGACTGTTGGAA--
i caeSp111.Scaffold622  I 50 C 0
s caePb3.Scfld02_0      2856343 90 +  4147112 --GGAGTGGATGTTG-------ATGGTTGCATTGACGGAACAACTGGTAACGATGCTTggatctgaaagaaaagat-aTTGATCGACGAAATAGTCGGAG--
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold17739   94404 87 -   130595 TTGTCATAGCCATGTTTTCAGAGTCATGACAACGTTGTG--GAGTGGTAGTGAGAATTTCAGTTGACGT--------GGTCA--GTGGCTCCACCAAAC---
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-1502.000000
s ce10.chrX             4599944 18 + 17718866 CGGTGTAAGAATTGGCAT
s caePb3.Scfld02_0      2856433  2 +  4147112 ----------------AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   94491 16 -   130595 CATTATTTGAATTGTC--
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I
e caeSp111.Scaffold622   264313  0 +   386604 C
e caeRem4.Crem_Contig0  1528997 15 -  4500979 I

a score=-21656.000000
s ce10.chrX             4599962 101 + 17718866 GTCCTTGTAGTTTTCCGATTC---CTTT-AAT-GCTTC---------CGAGGTAGAACTCTGGATACTTTCAATGAC---TGGAATTTGCTG---------TGATTCGCCCAAATGG-----GAATTGTCGG------
s caeRem4.Crem_Contig0  1529012  92 -  4500979 -GACATTGCTGTTGTCCATTG---TTGCCGAT-GTTTC---------TGCTACAGA----TGGAACAACTGGCT------CTTGTGTCGTTG---------GGATA-------ATAGGCTCAGAATGGGCGG------
i caeRem4.Crem_Contig0  I 15 I 6
s caeSp111.Scaffold622   264313  82 +   386604 --------CGACTGCTGGTTC---CTTT-----GGTTC---------AGAAACAGCAAG-AGAATCATCTCGGTTGA---TAGATTCATCTG---------CGATT-------TCAA-----CAGTAGCAGG------
i caeSp111.Scaffold622  C 0 I 19
s caePb3.Scfld02_0      2856435  95 +  4147112 CTACGTACCGGTTGTTGATTG---TTTCCGGCAGTTTC---------AGCTACAGC----AGGTTGAGCTGGAGTGGCCCTTGGCATTTCTG---------CGACT-------ATAG-----GAGTTGGAGA------
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17739   94507 110 -   130595 -------CAAAGTTTTGATTGAGACTTCAGAA-GTTTCCTTGTGATTACTTAAAGC----TTGATCCAAAGGTTGCG---TGGAATTTACGGTAGACGGAATGATC--------TGA-----AAATGGATGATGTAtg
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-3787.000000
s ce10.chrX             4600063 26 + 17718866 CTAGTGTGTTCGGTCGCGTAAGAGAG
s caeRem4.Crem_Contig0  1529110 21 -  4500979 -----CTATTGGGGCATCCGAGGTAA
i caeRem4.Crem_Contig0  I 6 I 3
s caeSp111.Scaffold622   264414 10 +   386604 ------TGTTCTGACG----------
i caeSp111.Scaffold622  I 19 C 0
s caeJap4.Scaffold17739   94617 20 -   130595 -ttgtatgtatgtacatataa-----
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2856530 23 +  4147112 I
e cb4.chrX              9922669 146 + 21540570 I

a score=-5651.000000
s ce10.chrX             4600089 19 + 17718866 -----------TCAGAATTTGTCGTCGTGG
s caeRem4.Crem_Contig0  1529134 16 -  4500979 -----------ATGCATCATGTTGTGG---
i caeRem4.Crem_Contig0  I 3 I 41
s caeSp111.Scaffold622   264424 10 +   386604 --------------GAACTTGTTG------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2856553 19 +  4147112 -----------TCGGAACTTGTTGGGTTAC
i caePb3.Scfld02_0      I 23 I 5
s caeJap4.Scaffold17739   94637 17 -   130595 agaacaaaaccacaaaa-------------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-3910.000000
s ce10.chrX             4600108 33 + 17718866 -TTTGATTCTCAATAAGT------------CCCGTTTGTTGAGCAT
s caeSp111.Scaffold622   264434 28 +   386604 -TTcg---ctctgaaaat------------ttagttt--taaaCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2856577 30 +  4147112 -CTTG---TTGTGGAGGT------------GGAACTTGCTGAACGG
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17739   94654 41 -   130595 tttaa---atttaaaaacaataccTGTATGCTAGTTGATTGCAC--
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I
e caeRem4.Crem_Contig0  1529150 41 -  4500979 I

a score=-18156.000000
s ce10.chrX             4600141 66 + 17718866 TAGAAGATTGAGCATTCTAAATAAAAGGGATGAACAGATGATATTAAAACTAAAACACTTACCTGA
s caeRem4.Crem_Contig0  1529191 65 -  4500979 TTGAGGACTGTGT-TGTTGGCTGAAACAAATATTCACTTGGtatgatatctgaaaatatttcaagg
i caeRem4.Crem_Contig0  I 41 I 45
s caeSp111.Scaffold622   264462 30 +   386604 TTG-----------------CCGCAATAACCGTTTCTCT-------------------TACCATTG
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0      2856607 33 +  4147112 TAGGAGGATAAG-----GAACAGCAAAAAC----------------------------TCCCTTTG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17739   94695 60 -   130595 -CAAAACTTGATTTTCTTGACTCGACGGAGTAAAAACTT-GCGCAGCAACTGACACATCCAC----
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=-6328.000000
s ce10.chrX             4600207 30 + 17718866 -----------TCCGAACTAACGGGGATACCAGACACATTA
s caeSp111.Scaffold622   264500 26 +   386604 -----------TCCG--TTGTTGGTTTTACC--TCAGACTC
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0      2856645 12 +  4147112 -----------TTTG--CTAGTAGC----------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17739   94755 18 -   130595 AGAAGCCACATTTTG--CGA---------------------
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I
e caeRem4.Crem_Contig0  1529256 45 -  4500979 I

a score=1511.000000
s ce10.chrX             4600237 7 + 17718866 CTCATTT
s caeRem4.Crem_Contig0  1529301 3 -  4500979 ----tcc
i caeRem4.Crem_Contig0  I 45 I 4
s caeSp111.Scaffold622   264526 7 +   386604 TTTGTCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2856657 3 +  4147112 ----TCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   94773 7 -   130595 CTTATCC
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9922669 146 + 21540570 I

a score=147817.000000
s ce10.chrX             4600244 347 + 17718866 --GTTCTCCCTTTTGCCGT---AAAGCTTTTTCAG------CGTCTTCTTGAGCGATTCGTTTCCTCGCAAGTTCTTCGACCCGAGCTTGTTCTGCCTGACGAGCCGCCAACTCCTTCTGTGTCTGTG--CTTTTTGT--TGAGCACGCTGCTGTTGAATGGCTTGTTGTTGTGCCTTGTGCAAGGTCAACGCAAACTGTGGATTATTCAAAAGCGGCCGGAGAATGCTCGGATTTTGCAGGTTGTGAAGCAGCTGCACTTGCTCCGCGTGCTCTTCTGGCGTTACTGTTACAGGCTGTGACAAGTTGGCACACGTAGCAGCGATTTGTTGTTTTTGAAGGGCGATGAGTATTTTCTGAAAA
s cb4.chrX              9922815 344 + 21540570 --gttcttccttcttc------ttagCTTCTTCCAACTCGGCTTTTTCTTGAGCAATCCTTTTGAGAGCAATCTCCTCGACACGTGCCTGTTCCGCACGACGAGCATCAATATCCTTCTGTAGAATCG--CTTTCTGC--TGAATTTGCTGTTGCCGCACCGCTTGTTGTTGAGCCATGGCGAGTGTCGCGGCAAACTCGGGATTCTGCATCAACGGTTGAAGAATCACCGGATTTTGGAGGTTGTGAAGAAGTGCAACTTGTTCGGCGTGCTCCTGTGGCGACAC----ATCGGT--GGACATATTGCCTCGACCGGCGGcgatttgttgtttttggagTGCGATGAGAATTTgctgaaag
i cb4.chrX              I 146 C 0
s caeRem4.Crem_Contig0  1529308 347 -  4500979 -----gcttcttcttcaaagcttcagcttcttcca------ctttttcttgagcaattctttttcttgcaagttcttcaaCACGTAATTGTTCCGCTTGACGTGCTGC-CTGTTCTT-TGCTGGCTCGAActttttgt--tcagtttcttGCTGGCGTACTGCTTGCTTCTGGGCCTTGATCAGTGTGGTCGCAAACAGTGGGTTTTGCATCAACGGTTGTAGAATAGCAGGGTTCTGCAGATTTGTGAGAAGAGCCACTTGCTCTTGGTGCTCTTCGGGCGTTACAGAAACTGGTTGAGACAGATTGGCACAATTTGACgcaatttgttgtttttgaagagCAATGAGAATTTGCTGCAAA
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   264533 336 +   386604 ----------------------AAAGCTGCTTTTGCAGCAGCAGCCTCCTCAGCAATCCGCTTACGAGCCAAGTTCTCAATTCGAGTTTGCTCGGCCTGCCGAGCAGCATTCTCCTTATTAGCCTGCG--CTTTTTGC--ATGATTCGCTGTTGACGAATAGCTTGTTGTTGAGCTTTGTGCAGAGTCACGGCAAACTGTGGATACTGTAGCAAAGGACGAAGAACTTGTGGATTCTGCAGATTCTGCAGCAGCAACACTTGCTCTGCGTGTTCCTCGGGCGTGATAGAAACTGGTTGTGAAAGATTGGCGCAAGTGGCAGCAATTTGTTGTTTGAGAAGAGCAATGaggattttctgaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2856660 336 +  4147112 ----------------------GCAGCTCTCTTCGCAGCAGCATCCTCTTCTGCAATACGTTTACGGGCCAAGTCCTCCACACGAGCCTGTTCCGCTTGGCGTGCGGCCATTTGCTTCTGTTGCTGTA--CTTTTTGACGAAGGTTTGC--TTGTCGGATAGCTTGCTGTTGAGCCTTGTGCAACGTAACCGCAAACTGTGGGTACAGTAGAAGTGATCGAAGGACAGCGGGGTTTTGCAAATTTTGGAGAAGTGAGACTTGCTCGTTGTGCTCTGCCTCTGTCACGGCGACAGGCTGTTGGAGACTGGCACAAGTAGCAGcgatttgttgtttttggagaGCGATGagtattttctgaaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   94780 351 -   130595 GCGTCCAACCTTGCTTGACGC-TCCGCAATTTCAG------CATTCTCCTGGGCAATCCGTTTTCGAGCAAGCTCCTCAACGCGAGCTTGTTCCGCCTGTCGAGCAGCAAACTCCTTTTCAGCCTGTG--CTTTTTGC--AGAGCACGCTGTTGTTGCATCGCCTGATGTTGCGCCTGTTGAAGAGATACGGCAAATTGTGGGTTCATCAGAAGCTGACGGAGAATTTGGGGATTTTGTAGGTTTTGCAAAAGGCTGCTCTGCTCAGACTGCTCTTCCAGCGTGTACGGATTCAGCTCACCGTGTTTCACTTTCAATGCAGCGAGTTGTGACTGTTGAAGAGCGAgcaatattttctgaaaa
i caeJap4.Scaffold17739 C 0 I 2200

a score=-10045.000000
s ce10.chrX             4600591 44 + 17718866 CAAAAAAATT---GAA---TTAG-----------AGTT---------GTTATGGCATGGCAAGAATGGGG-
s cb4.chrX              9923159 51 + 21540570 aaaaaga------gaagatttAA-----------ATTTGAACCAGAAAATGAG---ATGGTGGGAATGGAG
i cb4.chrX              C 0 I 656
s caeRem4.Crem_Contig0  1529655 38 -  4500979 TAATATC------AAA---TTAG-----------GTTT---------ATTGTG---TTgtaagaaagaga-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   264869 43 +   386604 ttgaagaattggaaga---agaa-----------actt---------ggaata---ttgagaaaatgag--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2856996 53 +  4147112 aagaaaa--tagaaaa---taaatatCAAAGTATATCT---------GTTGTG---ttgaaaaggagaga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I

a score=-31561.000000
s ce10.chrX             4600635 297 + 17718866 GAAAAATTTGGGA--AAATT-TTGTACGCG------------------------TTAGAAGGGAAGGA--GAAAGCAATC---------------AATGTGCCGCGATAAAAT---TAATGCACAGAAATACAAAA--------TTTTGT----------GGCAACGTACAAAATGGGGATAGAG-----ACAGGGACCGACCGCCGCGGCGGCGACGACAATAATTGATGTGAA-------------ACTAGGTG-----------CGGCAAGAAGAGGAGAAAGGAACAGAGGTTTTCAGAGAGAAAGCGGGTCGCCGCGATGAAC-ATAGGACTACACACAC--GC---------AAGCTCATGAGTAGAGCATTGCTTA--------------------------------------------------------TA-GCTTTCACACAACGCATA-----
s caeRem4.Crem_Contig0  1529693 405 -  4500979 aagatggGCGGCA--CAATGCATTTCTGTGACCAGTACAAGCCTTTGAAATGTGTGAGACGTGGAAGAATGGAGCTAATCGAATGC---------AGACATCCATATAAAAAT---GGAATCtcaagaacaaaaaa-----tttgagcgc------TAACGCCATAGCgcatgaaaagaaaaa-------aatgggacCGAG---TG-------AAGAAAGATAATCGAGAAAAAGACAATCTCTCACAGTGACAG-----------CG--GAGATGGCTAGAGTGACTCAGacattttcagtac-aaaaaggATGGGAATGTCAATCTATAGGACTACACACACATGCGAGGTAATATAGCCAATAGTCACA----CGCACACTGCCAACGGCCTCCCTCATGATAATGAATACTCTattataattgaaaactgGCATTGTGAATAGAGGGTGCGAAACTCGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   264912 301 +   386604 ---------------aaatg-atgaatgCGTTTAGCGTGCGTAggt--------tgaaaac---aaga--aacac-aATTGATGTCAGTTTGGT-GGTTTGTTTTACGAACGT---TGCTCgtagaaaatacaaaaattgttGTGATTGTACTGGAAGACGACAAAATGATGAACGCGG-----------ACTGAGCTCTAT-ACTA-------AACTCTAATAAAcaaggaaaacgaaa--------aacggaag--gcagt----ca--aaaagaaattggttAGCTCAG---------------AGTGGAGAGGACATGATGAAC-ATAAAAC-----ACACTGCC---------AACAATCTACAAAGC----CACGAA--------------------------------------------------------TATGCATATACATAATGCAGC-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2857049 355 +  4147112 agaatggttgagagaaaatg-aatgatgtGGCTTGTGTGTCTATGTGGCA-GTGTGGGAATTTGAACA--GACACAAATCAAATTCAATGCGACGGGGTTGCCTCACAAAAATTAATGTATGTTGGAAATACAAAA--------GATTGT-CTG--AAGCGACGAAACGCAAGACGTGGAGAAGGATGACAAGAAGGCCAGC-GCAA-------AACGATATTAATCGAACAAAACAGAA--------ACTGAAAGACGCGGCCGCaca--aaagaaagaaggggGGCTCAGCGGTTTTCCCTGC--AGTGGGGTCGATGTGATGAAC-AGAGGACTACATACCCCGGC---------TAGcacatagtcaca----cacata--------------------------------------------------------tatacatacacaccacacGTC-----
i caePb3.Scfld02_0      C 0 I 105
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I

a score=-4916.000000
s ce10.chrX             4600932 94 + 17718866 GCCTTCTAGACAATAGGGAAATGAG----ATATAGCTTCGAAAATGA------------GAAGCCACAACTACTGGTGGTCACCGG---ATAAAGCTTATCGGCTCACACGCT
s caeRem4.Crem_Contig0  1530098 82 -  4500979 --TCTTCAGACATAACGGAAATGAG----CTATAGT-----AAAGGAAATGAGCACGCCAAATAGCCATATTTGTTTTACCGCCGG--------GAATGTT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   265213 76 +   386604 ---CACGCCACCCTATGATAATGAATACTCtattat-----aattga------------aaatcgaCAT-----TGTGGCGGTCGGTGCGAGACGAGTATC------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2857404 105 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I

a score=-3343.000000
s ce10.chrX             4601026 28 + 17718866 GTTTCAACAAAACACATACACATAGGAC-----------
s caeRem4.Crem_Contig0  1530180 26 -  4500979 -ATTAATCAAATTGt-tgctcaaaaaat-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   265289 24 +   386604 -TTTCAACAAAG---------AGGAAATGGGCTC-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2857509 29 +  4147112 GTTCCAGCAAA----------AGGAAATGAGTATAGGGC
i caePb3.Scfld02_0      I 105 I 135
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I

a score=-1185.000000
s ce10.chrX             4601054 40 + 17718866 TGATTTCGAAAACAGG------TGCTAATTAATATTAGCTCATTTG
s caeRem4.Crem_Contig0  1530206 32 -  4500979 tggaataggaaattagatcatttccGAAGCCA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   265313 40 +   386604 TAATATCGGAAATGAA------Tgcggagaaaaaattgctttttgg
i caeSp111.Scaffold622  C 0 I 96
e caePb3.Scfld02_0      2857538 135 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I

a score=691.000000
s ce10.chrX             4601094 39 + 17718866 CATCTG---ATTTACAATTTGTAAGGGGAGGGGAAGGGACTA
s caeRem4.Crem_Contig0  1530238 42 -  4500979 CATGTGTtagtttgaattttggaacTAGCGGGGACTGGAGTA
i caeRem4.Crem_Contig0  C 0 I 60
e caePb3.Scfld02_0      2857538 135 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I
e caeSp111.Scaffold622   265353 96 +   386604 I

a score=0.000000
s ce10.chrX             4601133 24 + 17718866 GGCGTGTATTGTACGTTTTTCACT
e caePb3.Scfld02_0      2857538 135 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I
e caeSp111.Scaffold622   265353 96 +   386604 I
e caeRem4.Crem_Contig0  1530280 60 -  4500979 I

a score=679.000000
s ce10.chrX             4601157 19 + 17718866 TTTCAGCTTCAACTTCATG
s caeSp111.Scaffold622   265449 19 +   386604 TTTTGACTTAAATTCTata
i caeSp111.Scaffold622  I 96 C 0
e caePb3.Scfld02_0      2857538 135 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I
e caeRem4.Crem_Contig0  1530280 60 -  4500979 I

a score=-2613.000000
s ce10.chrX             4601176 17 + 17718866 TTTTCAG---------------------------CTGCTTCGC--------------T
s caeSp111.Scaffold622   265468 29 +   386604 ---------------caaaattaaaaacccGATTCAGCTGCAC--------------A
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2857673 53 +  4147112 ttttcagggactctagaaaattaaaa-----aggcAGCTGCACTaaggaaatcaaaat
i caePb3.Scfld02_0      I 135 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I
e caeRem4.Crem_Contig0  1530280 60 -  4500979 I

a score=-6937.000000
s ce10.chrX             4601193 22 + 17718866 --TCAAAATGACTTTC-------------------------AAAAGAT---G
s caeRem4.Crem_Contig0  1530340 34 -  4500979 --taataatgaaattC---------------AAGCTGTATCAGCAAATATa-
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold622   265497 13 +   386604 Tctaattc-----------------------------------agaat----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2857726 48 +  4147112 tctaaTTATAAATTACTGGGACTTTTCAGCTGGGTTTTTGCAGGGaat----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9923210 656 + 21540570 I

a score=36379.000000
s ce10.chrX             4601215 208 + 17718866 ----TAAAAATAACGCGAGCAGAGAGCAGGTGGTGAGCATGGATTCAGAAACTGACCATGTGCAGTGGTTCCATGTCAACGACGTGCTTGTACTTCACCATGTGCGCTCTCTCAATGTACATTCGTTCGATATTTG--TTGGCAGTTTCCTGGGAACTG--GACGGTGCTTGGCAGCAAAACTCTCACGAAAGTTTTTTACCATGCTTTCCTGAAA
s cb4.chrX              9923866 210 + 21540570 taaaaataaataa----acaaaaatgcaggtgattttt-tttcacttgaaACTTACCATCTGCAATGGATCCATGTCAATCAGGTGTTTGGATCTGACCAAAAGTGATTTGTCAAGAAGTTTGCGGTCGAAGTTCGCAGTGGA-TCTAACGAGTTTCTCAGTCGGGTGTTTAGCAGCATAATCGTTACGGAAATTCCTGACAAATGCTTCCTGAAA
i cb4.chrX              I 656 I 366
s caeRem4.Crem_Contig0  1530374 199 -  4500979 ----cgaaaataa----acaaaaagacAGGTGAATTTT-----GATGTAAACTAACCATCTGTAACTCGTCCATTTCCATCAAATGCTTTGCTCGTATGATTATAGCCTTATCAAGCAGCTTGCGTTCAAAGTTTT--GTGGATTCTTTCGAACCGGTC--TTGGATGACGGATAGCAAAGTCTTTACGGaagtttttcaccaaattttcctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   265510 195 +   386604 ---tcaaaacaaa----ataaacaaGCAGGTGGAT----------TGTTAACTTACCATGAAGAGTGGATCAGTTTGAACAGTATGCTTGTACTTCACTAATTTTGCTCTATCAATGAGATTCCTCTCAAGGTTTG--ATGGAGGCTTTGCCAATCTTC--GTGGATTCTTAACTGCATAGTCTTTTCGGAAGTTTGTAACCagtttttcctgaaa
i caeSp111.Scaffold622  C 0 I 45
s caePb3.Scfld02_0      2857774 201 +  4147112 ---tagaaaataa----ataaacaagcaggtgaagaag----aaaagtttacTCACCATATGCAGTGGATCCACATCCACAGTGTGCTTGTACCTAATCAAGTGTGCCCTATCGATTAGATGTCTTTCGATGCCGG--ATGGAGGTTTTCTTGGTTTCG--ATGGATGACGAGCAGCAAAGTCCTTGCGAAAGTTTGCGACTAACTTCTCCTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I

a score=-1072.000000
s ce10.chrX             4601423 44 + 17718866 -CAAAACGTATGGTG-ATTT--TGAAACGTAAAATCAGAAGTAGACCA---
s caeRem4.Crem_Contig0  1530573 43 -  4500979 -atatttgtaaaTTGTATTT--CAAACT--CCAACCAAAAGAAAATCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2857975 51 +  4147112 TAAAAGTATATGTTGGATTGAACAAAGTGACCAAATAGAAGAAGTATACGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9924076 366 + 21540570 I
e caeSp111.Scaffold622   265705 45 +   386604 I

a score=-570.000000
s ce10.chrX             4601467 180 + 17718866 CTTGAAATGTGGCTTAAAGATTTTGT---CAAGGAAAGTAGCATAATACATTTGTACTCTAGAGTCATCAGATATGAAGCATACTTAAAAGTGATTTATCTCTATTTGGATTATTATCTCAAAATGTTTTACAGTAATATTAATGAAAATAT------GGAAGAAAAAAATTGAAAAAAATTGATTGAA
s caePb3.Scfld02_0      2858026 122 +  4147112 CTCCaa---------aaaaaCTTAGTTTCCAAGAAACGCA--ATAGTATAGCT-------------------------GCACACATTAAAGTGGCTC-------------TTGTTATA-----------TACAACTATGCCAATCTAGATATTCTCACGAAAGAGTcacatggaaa-------attgaa
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9924076 366 + 21540570 I
e caeSp111.Scaffold622   265705  45 +   386604 I
e caeRem4.Crem_Contig0  1530616   0 -  4500979 C

a score=0.000000
s ce10.chrX             4601647 265 + 17718866 AACCACAAAAAAAGGACTCTTTCTTCAGACCGCTTAGTAGTAATCTAATCTTAATCAGAGAATGAATAAAAATTACAGTTTTGTGTACTTTCCTTGAGtgagtctaaacctcttcctaagcttgagtttagacctaactaatctcaagcctaatcctaagATCAATCCGTATTTTCCCTATTTGACTTCCAGTTTTTCTCTACTTTCACGGCATACATGTCGGTTCTTTTTGGTTTATTAAAAACTTTTAAACTGTTTTAAACAT
e caePb3.Scfld02_0      2858148  94 +  4147112 I
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9924076 366 + 21540570 I
e caeSp111.Scaffold622   265705  45 +   386604 I
e caeRem4.Crem_Contig0  1530616   0 -  4500979 C

a score=-748.000000
s ce10.chrX             4601912 37 + 17718866 AAAAATCAAAGTCGTCAAAGTGGGGCCAGGGTATTCT
s caePb3.Scfld02_0      2858242  9 +  4147112 aaaaaacga----------------------------
i caePb3.Scfld02_0      I 94 C 0
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e cb4.chrX              9924076 366 + 21540570 I
e caeSp111.Scaffold622   265705 45 +   386604 I
e caeRem4.Crem_Contig0  1530616  0 -  4500979 C

a score=273.000000
s ce10.chrX             4601949 1 + 17718866 A
s cb4.chrX              9924442 1 + 21540570 A
i cb4.chrX              I 366 C 0
s caeRem4.Crem_Contig0  1530616 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2858251 0 +  4147112 C
e caeJap4.Scaffold17739   95131 2200 -   130595 I
e caeSp111.Scaffold622   265705 45 +   386604 I

a score=4192.000000
s ce10.chrX             4601950 15 + 17718866 CTCACCAATCTAACA
s cb4.chrX              9924443 15 + 21540570 CTTACCAATCTTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1530617 15 -  4500979 CATACCAGTTTTACG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2858251 12 +  4147112 ---accaaGGCAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   97331 15 -   130595 CCTACCAATTTCTCA
i caeJap4.Scaffold17739 I 2200 C 0
e caeSp111.Scaffold622   265705 45 +   386604 I

a score=20943.000000
s ce10.chrX             4601965 270 + 17718866 TCATCCGGATTCTTGTTCGTCCTTTTACCCGTTTCTTTGATCGTTGAAAACTCTTGATCAGTGTTTCGAACGCAAAAACCCAACGCCAACACTT------CGTCAGTAAC---AGCTGGCTGTTGAGCAACCAATTTGAGAAACTCGGTCGACACGTATTCTCCAATCGTTCGCTTGATCATTTTTGCATCGGCAGTTGCG-ACAAATTCTCCAAATTTCGTATCAAAGTCTTCAATTTCCTCG------------TCTAAAACGA-----AATATTAGTCTAAAT---------------------------TGTATTTTTTG
s cb4.chrX              9924458 275 + 21540570 TCTTCAGAGTTTGCAGGTAGCTGTTTGCCAGTTTTGTAGAGCATCTCATAatctttctcaaaatcacGAC-ACATAAACT-----TCATTGCTTGAGGCACATCGTTTGG---AGTCGGTTGAGGAGTGATAATCTTCGTATACTCCATACAGACGTGTTCCGTAATCGTAGGTTTCAGCACGTGAGCGTCAATGTCAGAT-ACAACAGAATAGAATTTGAAGTCAAAGTCCTCGTCATACTCACTGTTttcttcgtctgaaatt----------ttta--aaaat---------------------------tatgtttttcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1530632 304 -  4500979 TCGTCTGGATTTCTCGCCaatctttttccagatttacCAAATGTTGTGAACTCTTTTCTTGTGTCTCGGCTACAGAAGTCCAAAACCATCGTTT------CATCGTTAAC---AGGTGGTAATTTGGCAACAACGTTAAGGAATTCCGTAGAAACATATTCCCCATAAGTTGGCTTTATTAGTCCTATGTCAGCCTCTTCTAACAATTGAGCC-AATTTGTCTTTCAGGGACGCTTCGTCATCAccactt------tctgaaatta--tctaCGGTTCA--AAAATaggatgaaatgaaaaaagaatccCACCTGAATCCTCTG
i caeRem4.Crem_Contig0  C 0 I 72
s caeSp111.Scaffold622   265750 270 +   386604 TCATCCGGGTTCTTgttattcttctttccagTGTCCTTCAACATTGTAAACTCTGCCTTTGTGTTTCTCACACAGAAATCTAATGCGAGAGCCT------CATCAGTAACAGTAGGCGGTTGCTTGGCAACAAGTTTAAGAAACTCTGAAGAAGTGTAGTCCTCAAGTGTTGTTTTGAGAAACTGAATGTCGGATTCGCTC-ATGATCTCACCAagtttcttctccaaatcaAATGGTTCGTCG------------TCTGAAACTA-----TATTTTGA--TAtgt---------------------------ttcattgttt-
i caeSp111.Scaffold622  I 45 I 1
s caePb3.Scfld02_0      2858263 273 +  4147112 TCATCAGGGCATTTTTTCGGCGGCCCGccggttttctcaaaatgcttGAATTCGCTCTGGGTGTCTCTGCCACAGAAATCCCAAATGACTTCTT------CTTCGGTGCC---TGGTGCAGACTTGGAAaccattttgagaaattccaGTTGTGCGTAATCCGAAATCGTTGGCTTAATCACATCCACGTCAACATTAGCT-ATTATTTCGCCAAGCTTATGCTCAAGGTTATCGAAAccgtca------------tctgaaaaaagtgctgATGTTGG--AGAAT---------------------------ACTAACGTTTA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17739   97346 266 -   130595 TCGTCCGGATTTTTGGTTGCTCGTTTCCCAGTACCCGATAAAATTCCAAACTCGGCGTCCGTATTTCGCATACAAAAGTCTAGCGCAAGAGCTT------CATCGGAAAT---TGGCGGCTCTTGCCTGACCAATTTTAAAAACTCGTTCGACACGTAGTCGCCAATGTTCCTCTTTACAATATCCACATCGGGTTTTGAG-ATCAATTGTCCAAGTCTATGTTCAAGGTAGTCTGGGTCTTCA------------TCtgcaagag-----aaaa--aa--aacgt---------------------------gatagCCTCTC
i caeJap4.Scaffold17739 C 0 C 0

a score=-1576.000000
s ce10.chrX             4602235 2 + 17718866 --CT
s cb4.chrX              9924733 2 + 21540570 --cT
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold622   266021 2 +   386604 --at
i caeSp111.Scaffold622  I 1 I 7
s caePb3.Scfld02_0      2858546 2 +  4147112 --CT
i caePb3.Scfld02_0      I 10 I 70
s caeJap4.Scaffold17739   97612 2 -   130595 AG--
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1530936 72 -  4500979 I

a score=-11052.000000
s ce10.chrX             4602237 76 + 17718866 -----AAATGGT--T-TAATTTACCTGAAACAGTTTTCTCATGCTTTAAAGATATTTTGACAGTTTTTGATTGAGC--GTCAAGAG--------
s cb4.chrX              9924743 71 + 21540570 -----GATTGGT--TGATGCTTACCTGTAACATCTGATTC-CGAGTCGGAGAGTGTTAAAAAGGCTTTGATTATGC-------CGG--------
i cb4.chrX              I 8 I 13
s caeSp111.Scaffold622   266030 38 +   386604 -----AAT--------GTACATACCTGAATCATC-----------------------AGAACAACTC------------TCAATGG--------
i caeSp111.Scaffold622  I 7 C 0
s caeJap4.Scaffold17739   97614 93 -   130595 AGAGGGAACGGTAATAAAACTTACCAGAGGAAGATTCATC-AATTTCCGGTAGTTTTTCGATAACTTTGATCGTTTTGGCCACTGGATCAACAA
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2858548 70 +  4147112 I
e caeRem4.Crem_Contig0  1530936 72 -  4500979 I

a score=-52492.000000
s ce10.chrX             4602313 304 + 17718866 TTTCATCTTCGAA--------------ATC--CGATT--------------TGTCAGATTCACTTGAACTA--GCTTCA----------------GATTCTTTGTCCACTTCAAC-AG-----TC--GGAT---TGTCAGCGTCC---TTTTTTTGTTGCTCACTTT--CCATTT-----CATCTTTCTCA-----ATTCTGGGTTCTTGCGCTTCT---------CTTGACTCAGACTCCTTTACCG----------------------TTTTAGA------------------------ACTTGG------------C---------------TTTCTGTTCTGC------------------TCTAGGGAATCTTCAATAATCTGTTGCTCTTTCCCAACACGCTCTATTATCAACTCTCGTTGTGCAGCTTGTGCAGACGAACATGGCTCATCTGGGTCGAAAAA------------TATTTCCTC
s cb4.chrX              9924827 360 + 21540570 TTCCAGCGGTGGATTGAC---------GTCAGCAACTGGTTTCTCCTTTGGTGC---GTTATCCACTTCCATGACTTCAG------------GTTGCTTCTCCTGC-TTTTCATCTAGCGTGATC-----T---CTTCGATGGTG---TCCGTATTTTGAGCAAGTC--TTTCTG-----gagttttcggt-----tttttgaataCTCCATCATTTTGTGCTGGTGGTAGC---GGTTCTTTGAAGG----------------------TTGGTGA------------------------TTTTGG------------CGGTGATGACACT---TTTGCTTTTAGC------------------TTTATAGAATCTTCAATGATCTTCTGTTCTATCTCCATACGTTCAAGGATCTTGTCTCTTGCGTCCGCTTGTGCTGAGCTGCACGGCTGATCGTCGTCAAACAAGAAAGTATCGTTTCTATCTTC
i cb4.chrX              I 13 I 3
s caeRem4.Crem_Contig0  1531008 364 -  4500979 CTTCATCATCAGATTGTT---------GTT--CAACT------TCCATTGTTTCCAAGCTCTTTGCAACCGACACATCA-------------------TCGCCTTCATCTTCATC-AGAATCATCC-GATT---CCAAAACTGTT---ACGTCATGATCAACACTAC--TCTCTG-----TTGATTTTGA-------TACAGGGGAGTCAACGACTT-----------TAGT---AGTTTTCTCCAAGGACTCATCTCCACTCTGCTTCATTGGCGA------------------------TTCTGGAACTTTGAACACCGACGGAGACACTGACTTTCTATTTGGT------------------TTCAACGAATCTTCAATGAGCTGTTGTTGTCTTTCGTAACGTTCTCTCATCTTATCACGGGCTTCAGCTTGTGCAGAACTGCATGGTTCATCATCATTGAAGAA------------TATATCTTC
i caeRem4.Crem_Contig0  I 72 C 0
s caeSp111.Scaffold622   266068 301 +   386604 ---------------------------GTT--CATCG------------------------------ACTGAGAAGTCa----------------accttttttgaatcttcatC-AA---------CAGTTGACTTGAGATCAGAAAGCTCTTCgttcttctcttc--tatctcaggaataactttttc-------ttctggctTCTCAACAATCT---------G--------GATATCTTCAA------------------------TTGGTGC----------------ATCGAC--TTGTGG----TTGTGC--CGAAGAAGACGGTTGATTGTTACTCAAT------------------TGGATAGCATCTTCAATAATCTGCTGTTCCTGATGAAGACGTTCCATCATTTCATCTCGTGCAGCAGCTTGAGCAGAAGAACATGGCTCGTTgtcatcaaaaaa------------gatatCCTC
i caeSp111.Scaffold622  C 0 I 68
s caePb3.Scfld02_0      2858618 376 +  4147112 CTTCCTCCTCGGAATCACTTTCTTCCTGTT--CATTT------TCCTCGTCTCC---CTCCATTTTCACCAAGAATCGA----------------ACTTCTTTAGCTTCctcatc-aatttcttcctCAAT---CTTAAGTTCTG---GCTCCTCAttactcttttcattttctc-----cagcTTCCTCC-----TTTCTGGCTGTTTCGCTTCCC---------GTTGGT---Gacaattttgaaggaaat-----------------ttgGTGCTAGAGGGCAGCTTTGGAACGGCAAATGTGA----TTGGA----GGAGTAGCAGGT---TTCTGATTGAGC------------------TTAAGAGACTCCGCAATCAGTTCTTGCTCACGATGCACTCGTTCCATGATTTTGTCACGGGCGTCTGCTTGAGCGGAAGAACAAGGTTCATTATCATCGAAGAT------------AATGTCTTC
i caePb3.Scfld02_0      I 70 C 0
s caeJap4.Scaffold17739   97707 364 -   130595 ------------------------------------------CCACTTCAGTGTCCGTATCATCACTCTCGCTACtttggatgttgttttttgttgtttctgtttcttccgtttt-aaaacttttatgatt---ttt--atccAG---CTCGCTCGTTAAGCATTCT--ATCCTAGAGACCGGATCTTTGATATAGTCTCCAGATGTTGCATTTGGA---------GTCGTT---GGCCTCGCAGAAGCGCCG-----------------TTAGAAACAGGAGT-----------------TTCTGA------------AGTAGAAGTACAT---GCTTCACTTGACGCTTCTTGCACCCCCTTTTCAATAGAGTCCTCGATAATTTGTTGCTCTTTTTGAACACGATTCATCATTATGTCTCTCTGTTCGGCTTGAGCTGAAGAGCATGGTTCGTTGGgatcaaaaaa------------catttcatc
i caeJap4.Scaffold17739 C 0 C 0

a score=-5162.000000
s ce10.chrX             4602617 41 + 17718866 AATAGGTGTTTCT---------TTCATCGCAACT---CCTTCTTCAAACGGTG---
s cb4.chrX              9925190 41 + 21540570 GAACAATTCTCTG---------GTTTCCATAAGT---TCTTGATCAGAGGCGG---
i cb4.chrX              I 3 I 66
s caeRem4.Crem_Contig0  1531372 41 -  4500979 AATCGGCGTTTCA---------ACCATCACAAGT---TCCTCATCTACACCGG---
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0      2858994 53 +  4147112 AATTGGAGTTTCACCTAATCCTGGCAACGAAAGTGGATCCGTAACTGACCCGG---
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17739   98071 32 -   130595 AATGGCAGTTTCT------------------------CCAACATCTGCAGCAGGAA
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   266369 68 +   386604 I

a score=-12788.000000
s ce10.chrX             4602658 26 + 17718866 ------------CAGTGC----------TAGTTGTAGGATTCTCAGTA
s cb4.chrX              9925297 30 + 21540570 ------------CACTAGGTGGAGTTGATGTTTG------CCTCAGAG
i cb4.chrX              I 66 I 14
s caeRem4.Crem_Contig0  1531425 20 -  4500979 ------------CACTCG----------TATTTG------GCTCCTCG
i caeRem4.Crem_Contig0  I 12 I 52
s caeSp111.Scaffold622   266437 20 +   386604 ------------CAACAGG----------GGCAG------CAGCGGCA
i caeSp111.Scaffold622  I 68 I 3
s caePb3.Scfld02_0      2859079 27 +  4147112 ------------GAGTTGGTGGGCT---CGACTG------TCTCCGTA
i caePb3.Scfld02_0      I 32 I 3
s caeJap4.Scaffold17739   98103 41 -   130595 CTGGACCAGCTTCGACAGGAGAAGA---AGACTG----CTTTTCAGAA
i caeJap4.Scaffold17739 C 0 C 0

a score=-2711.000000
s ce10.chrX             4602684 10 + 17718866 ---GCAA---TTGGTG
s cb4.chrX              9925341 10 + 21540570 ---GCAGTTTCTG---
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold622   266460 10 +   386604 ---GGAG---CTGGGT
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2859109 10 +  4147112 ---GCAA---CTGGAT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17739   98144 10 -   130595 ACTTCCG---TTG---
i caeJap4.Scaffold17739 C 0 C 0
e caeRem4.Crem_Contig0  1531445 52 -  4500979 I

a score=13153.000000
s ce10.chrX             4602694 216 + 17718866 CTGTCGGAGACG-------------------------------------------------------------CTACTT--TCACAACTTCTTCTTCAGGT---GTCTCTTCCTCTTCAATTTCTTCTTCTTCTGTAGTGTCAACATAAACATTCAACTTTTTTGACGCTGCTTCAACGGCTTCCAGAACAACTTGTCTTCGACGATGTATCTTATATTCTTCGTGAGC---CACTTGTTCCTCGGCCAGTCGGCTAATTTCTTCCATTGGGATTTCTCTTGCGT
s cb4.chrX              9925351 240 + 21540570 CTCTTGG---TGAACCTTCCTCAGGTAGTTGCAGCTCTTCCAT----------------------CTGCTCTCCTTCTT--CCACCTCATCGTCC---------tcatcttcctcctcctcGGATTCGC------TCGACTCGATTCTAATATCTAACTTTGCAGCTACAGTTTCCACAGAGTTCAGAAGTGCCAATCGGCGACGATGGATCTTATTTTCCTCGAAGTT---CGTTTGTTCTTGTGTTATCCGAGCGATTTCGTctttatccaattttttgacat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1531497 267 -  4500979 CTGTTGGAGTCGAACATTTATC---------CAGATTCTCGATAT-CATGTGAATAAACACTCGACTGATCGTCCTCTC--TAGTTTCATCCTCCTCCGAG---TCACTTTCGTCTTCTTCCGACTCGTCATCCGTACTCTCAACTGTTATACCAAGCAAATCAGCAGCATCATTCACCGACTTCTCCAATGCAAATCGACGTTGATGGATCTTATTTTCTTCGCGTgc---tacttcttcttctgtcaAACGATCGATTTCCTCCATTGGCAAGGCTCTCGCAG
i caeRem4.Crem_Contig0  I 52 C 0
s caeSp111.Scaffold622   266470 219 +   386604 CAGCAGG----------------------------TGCTGGGC------------------------------CTTCcc--tcatttcttcattttctggt---TCAACAGGATCAACATCGTCTTCGTCATCCGAACTGTCAATACAAATATCGAATTCTTTGGCAACAGTTTCAACTGCTTCCAAGACAGCAGCACGTCGACGATGAATTTTGTTCTCCTCGTAAAC---AACTTGTTCTTCAGTGATTCGAGTGACCTCATCCATATCCACTTGTTCTGCAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2859119 228 +  4147112 CAGTGGGA--CGAAT----------------CACATCATCGTT------------------------------CTCCTCGTTATTTTCCTCATCTTCCA------TGATATCGTCGTGTTCTTCCTCGTCTTCCGAACTTTCAATAACCAATTCTAATTCCTGAGAAGCAGTTTGAACGGCTTGTAGAACAGCATGCATTTGACGGTGAAATCTGTCCTCTTCGATTGCCCGCATTTCCTCTTCCATG---CGTGTAATTTCGTCCGCGTCAATATTCTCTTCGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739   98154 222 -   130595 ---------------------------------CTTCTTCATTAGACA-------------------------CTTGTG--CAGGTGCTTCGTTTGGCAATTGCTCCACTTCCTCACTGCTCTCTTCATCTTCGGTCGTGTCAATGTAAATGTCAAGATCTTTGGCAGCAGCTTCGATTGCCTCCGTGACAATCTGCCGGCGCCGATGAATCTTGTTCTCCTCATAGGC---CACTTGTTTCTGAGTCATCCTTTCCACTTCATCCATCGTCAGCTTTTTCGCGT
i caeJap4.Scaffold17739 C 0 I 1981

a score=-496.000000
s ce10.chrX             4602910 12 + 17718866 TACGGCGACCAG
s cb4.chrX              9925591 12 + 21540570 gTTGTCTCCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1531764 12 -  4500979 ACCGTCGACGAG
i caeRem4.Crem_Contig0  C 0 I 82
s caeSp111.Scaffold622   266689 12 +   386604 CTTGTCGACGAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2859347 10 +  4147112 C--ATCTTTCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I

a score=-11575.000000
s ce10.chrX             4602922 86 + 17718866 TAAAGTCAAGG-TTAGATTTACTTGGCATTCTG---TTTGCTGAGTCTGAAATTGTTACAATTCG-----TTTTTTTAATGAAAAGACTTTGATT
s cb4.chrX              9925603 84 + 21540570 CTCTGTTGCGT-TTCGTTTTATGTGGAATCTCA---GATGAACTatctgcaaaaa--atgttttgaaactaacaaaatttgaaaaaaaat-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   266701 76 +   386604 AGATGTCTGGT-TTAGTTG---ATGAAGTTTTACGCTGTGCagattctaaaaaag--aa-----------aataactaCCGTTGAAACGTT--TT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2859357 73 +  4147112 ACATTTCGAATATTCGTTA-----------TCACGGGAAAAAGTATCTGAAATAA--AACGTTTG-----AATGTATATTGT----ACATTGATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeRem4.Crem_Contig0  1531776 82 -  4500979 I

a score=8167.000000
s ce10.chrX             4603008 56 + 17718866 -----CATACCATAAAATACTTTGTGTTTTATTATAGGTTTACCAGTGGCTACGAGTTCGT
s cb4.chrX              9925687 56 + 21540570 -----cataccaTAGAAAACCTTATGCTTGATGCAAACTTTAGTGCTGGCCATCAGATGGT
i cb4.chrX              C 0 I 661
s caeRem4.Crem_Contig0  1531858 56 -  4500979 -----CGTACCATAAAATACGCGATGATTCCAGCTCACTTTATTGACAGCTAGAAGTTCTT
i caeRem4.Crem_Contig0  I 82 C 0
s caeSp111.Scaffold622   266777 61 +   386604 CAATACTAACCATAGAAAGCCCTATTCTTCAGTAAAGGATTGGCGGATGCCAACACTTCCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2859430 61 +  4147112 CAAAACTAACCGTAGAAGACTCTGTGCTTCAGCACTGGTTTGACACATGATGCTAGCTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I

a score=-518.000000
s ce10.chrX             4603064 28 + 17718866 ---TTCCATCGATCGAAAAAACATCAAAA---TC
s caeRem4.Crem_Contig0  1531914 31 -  4500979 CAAACTTGtcttttgtgattttatcCAGA---TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   266838 28 +   386604 ---AATCATCCATAGGAG---CATCCTCAAACTC
i caeSp111.Scaffold622  C 0 I 1283
s caePb3.Scfld02_0      2859491 28 +  4147112 ---AGTTATCGAGTGAAGatacatcatca---tc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e cb4.chrX              9925743 661 + 21540570 I

a score=-1661.000000
s ce10.chrX             4603092 20 + 17718866 -----------ACTGAGATCAGAATCATCCG----------
s caeRem4.Crem_Contig0  1531945 41 -  4500979 AGCTGATTCAGATTCTTCCCAGTCTTGATCAGAGTCATCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2859519 20 +  4147112 -----------atcgatttcagttttgtctG----------
i caePb3.Scfld02_0      C 0 I 713
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e cb4.chrX              9925743 661 + 21540570 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=-1911.000000
s ce10.chrX             4603112 148 + 17718866 CAAGTTTT-------------------CTTCTTCTCGTGTCAAGCTTCCTTTTGTGCATTTTACGA---------------------TCTCTG--GACGTAGATGGTTCA------------------------------GAAGGTGAAGACGATCCTTGTGTCTCTCTTTCTGTACCCGACGTCTTGATTATAGTAGAAGGGCCTG---------------------------------CTTCTGATGTCTC
s caeRem4.Crem_Contig0  1531986 247 -  4500979 CAGAATCTTCCAAacggattttttgaactttttcagttatcaCAGGTATTTTCTTCcgtttgacaacttttcttaCTGAGGCCGGAGTTTCTGCTGATGTGGTCGGTTCAACATCAACTTCCATCGGCTGGGTCGAGGTTGAAGGTTCAGATg----ttgtatttttgagaatggaTTTGA--TTTTCTTTGGTGAAGAGGGTCCTGACGGAGAATCTTCCTTTATTTCTTCCTCCATTTCTTCGGTTTTCTC
i caeRem4.Crem_Contig0  C 0 I 96
e caePb3.Scfld02_0      2859539 713 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e cb4.chrX              9925743 661 + 21540570 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=0.000000
s ce10.chrX             4603260 43 + 17718866 CGATTGTTCCATCTCTGCAGAAGGTGATGTTTCTTCGGAGTCT
e caePb3.Scfld02_0      2859539 713 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e cb4.chrX              9925743 661 + 21540570 I
e caeSp111.Scaffold622   266866 1283 +   386604 I
e caeRem4.Crem_Contig0  1532233 96 -  4500979 I

a score=473.000000
s ce10.chrX             4603303 5 + 17718866 GACAA
s cb4.chrX              9926404 5 + 21540570 GACAA
i cb4.chrX              I 661 C 0
e caePb3.Scfld02_0      2859539 713 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I
e caeRem4.Crem_Contig0  1532233 96 -  4500979 I

a score=-2926.000000
s ce10.chrX             4603308 22 + 17718866 ---TGTAACAGTTTCAT----------CAGAT-----------------------GAA
s cb4.chrX              9926409 23 + 21540570 --TAATGACGTCGTCGT----------CGATT-----------------------GGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532329 58 -  4500979 TTTATCGACTTCTTCATCTGAAACATCCGTTTCTACATCAAGAAGGTCAGGTGGAGGA
i caeRem4.Crem_Contig0  I 96 C 0
e caePb3.Scfld02_0      2859539 713 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=1397.000000
s ce10.chrX             4603330 147 + 17718866 ATTTCGTAGTCTTCTGGGGGTATGACCAACTTTTTCTTGCC------------TTCCTTTAGAACTGAAAAAG---AACAGAATTTAATTTAAACTT----TCAATTTAAT--------TCTTACCTGGTTGTGGGTATACCACATAAACCGCTTCCGGACAAACATTCATTGA----
s cb4.chrX              9926432 145 + 21540570 ACTTTCCAATCTTTTGGTGGTATTTCAAGCGCCTTATC---------------TTCTTtgacaactgaaaaaattcaaa----tttaaattcaaGTGATTATAAATTTTGT----------TTACCTAGTTTTGGATAAACTACAAACACATCCGTTGG----ATTTTTAGTGGATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532387 150 -  4500979 GCTCGGTAGTCTTCAGGTGgcaattcacgttttttgtt---------------aattcGCGGAGCTGAAAAGG---AAA------TAATTTCACGTTTGCATCAACTTTTTCGTTAGGTTCTCACCTGGAGAGGAATAAACTGCGATAACCTCAAGTGG----TTCACCATCCAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2860252 155 +  4147112 ACCTCATATTCTTTTGGAGGaatcttcaactttttgtcGTCCTTTGCCTTTTTAGCTTTCAAATCTGAATCAC---AAC------TAATTAAGAATTGCCAGTAGTTAGAT------AAAATTACCTTGGCCTGGATAGAACAGGTAAACTTCGTCTGG----ATCTTCGTTGA----
i caePb3.Scfld02_0      I 713 I 29
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=-241.000000
s ce10.chrX             4603477 25 + 17718866 TAAGCGATTAGTTCCCGGCGCCCTT
s cb4.chrX              9926577 25 + 21540570 CAATCCCTCGAAATCTGGATCCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532537 25 -  4500979 TAGTTGTTGAAATGCTGAATGTCGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2860407 29 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=3408.000000
s ce10.chrX             4603502 68 + 17718866 TGAACTTTTGGTCTACTAATGCCAGTGTCTCCGGGTCTGAACAAGTATCCTCCGTACATTTCA---TCATC---------------
s cb4.chrX              9926602 83 + 21540570 TGGAGTGTAGGACGTCCAAGTGAATCATCGTTAGAGCGGAATAAGAATCCCTCGAACATTTGA---TCATCTTTGGCGAGTGGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532562 85 -  4500979 TGAATCAATGGCCGTTCATTATTTGCATTTTCCGGATTGAAAAGAAATCCTTCAAACATCCTATTCTCAGTTTCAGCCGG-GCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2860436 68 +  4147112 TGAACAGTTGGTCGATCTTCTTCTGGATCGTCGGGTCGGAAAAGAAAACCCTCAAACATTCTA---TTATC---------------
i caePb3.Scfld02_0      I 29 I 56
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=-1958.000000
s ce10.chrX             4603570 35 + 17718866 GTGTTCCATAATA-----TTATTG----AGAAACGTA-------------------TCTGTTC
s cb4.chrX              9926685 41 + 21540570 GAACTCCTCGATA-----TTCTTGCTGTCGAAATACT-----------------CTTCTACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532647 63 -  4500979 GCAACCGCCGATGAAACTTTATTGCTTTACTCATGTTCACTTCATCAtcaacaacttcttctt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2860504 56 +  4147112 I
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=-37578.000000
s ce10.chrX             4603605 276 + 17718866 ---CTTTGTCAGCGGTTATATGTTCTGGAGTCATCTCATCGTCAGATACTT---CCTCAGAGAC---------------------TTTGTCTGGCTTTTCCTCGATTTTCG--------------------AACTAGAA------TCTGGAG----ACGTTTCACCG-GGTTTACTTGTGATCGCAGATTG------------------------------CTTGAC------------------GTCTTT--TTTCACGAC------GGTTATAACTTGACAGTCATCATCTACGGAAGTCGGATTTGGTAGTGGCTGGCGGTGACT---------------------------GAGAAACTTGCTGATCTCTTTTTC--ATGTTCAGAATC---------------GATTGAACTCTCGCGATCCTCCG---CTT
s cb4.chrX              9926726 207 + 21540570 ---CCTCGTCAAC---------CTCTGCGTTCTCGTCAATCTCAAAATCGT---CGTCAGA-AT---------------------CATCCTCATCTATCACTACAGGTTCACTTTGCGCCGCT--------GACTTGT-------CCTGCA-----CAGttt------tgtctcgtttt------------------------------------------ttcaagga----------------ttctctaatttttctct------caatttcttt-----------------------------tgCCAATGCATGAC--------------------------------------GCCTGCATGATTTTTCCTCC------------------------------TCTGagtcttcattttcagatg------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1532710 375 -  4500979 ---cttcttcaaa---------ctcCTGAACTTCctcgttttcaatttctt---cgtcTGC-ATTTTCGCCTTGGTTCCCATCAACATCCTTGTCAGGTTCTACATCGACAATTTGTTCTGTTTTGCTCGAAGTTGGT-------TCGGGAGTTAGAAGTTTCTCAG-TGTCCCTCTTTGGTTGAGCAATAATCGATTCTGATGAAGGTGCATCAGATGACTTTAAGGAATCAGAAGTTGCTGGTGTCTCCAGTTTCACTATCTTCTCCGATTTCTCT------CCAGTACCTACTGAGG-------TGCCATTTTCTGAC--TGGTTTTCGgaagattttgaaagttttcgcTTTAAAAACTTCCTAGCTTTTTCTTC--AGTGTCCGGGGC---------------AATTGAATCTTCACTATCGGTGG------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2860560 305 +  4147112 CTTCCTCGTCGAT---------TTCGGATTCTGAGTcaccagaaattttttccacgTCAGC-AC-------GTGTTGTCGAAC--TCTCTGCAGTTTTTCCTCCAGCTTCAGCTTTAGATG----------GACTTGCAACAGTGTCTGCCGACTTTCGTTTCTTAGAGATCTC-------TGGAAAAATA----------------------CGGATGAGAACGATGA----------------GACTCT--TCTTTCTAT------TATGTTAcct------tcatcatcagaagaat-------CGTCCATTGGTCGTGCTGGTC-------------------------------GCTTTCTCAAATATTCTTTCACAGTCTCCGAAACCTTGATCTTGCTCTGGTCGGAGTCCTCAC---CAGATGAGT---
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I
e caeSp111.Scaffold622   266866 1283 +   386604 I

a score=-640.000000
s ce10.chrX             4603881 19 + 17718866 ---------CATCAGATTCGTGCTCCGA
s cb4.chrX              9926933  7 + 21540570 g---------------------ttCGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1533085 28 -  4500979 AATCAGACTTGCTTGATTCCATTTCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   268149 19 +   386604 ---------CAtcagattctttttctga
i caeSp111.Scaffold622  I 1283 C 0
s caePb3.Scfld02_0      2860865 19 +  4147112 ---------CAGAAGAGTTATGATCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739   98376 1981 -   130595 I

a score=24565.000000
s ce10.chrX             4603900 59 + 17718866 GTTTGAGTCATCGCTGATTACATGAATTTCT-------CCATCTTTCTCGAACTTTCGATCCACTT
s cb4.chrX              9926940 59 + 21540570 ATTGGAATCGTC-------GGTTACAATTCTTTCCACACCGTCTTCTTCGTACTTGCGATTCACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1533113 59 -  4500979 GTTTGAGTCGTCTTCAATAAGCTTCAATTCT-------CCATCAACTTCAAACTTTCGATTCACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   268168 59 +   386604 gTTGGAATCATCATCCATTGTTTTTACTACT-------CCATCCTTCTCAAATGCTCGATCAACTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2860884 59 +  4147112 GTTGGAGTCATCACACATCTCCCTGACCTCT-------ccatctttttcaaacttccggTCTATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  100357 59 -   130595 GTTTGAATCATCGAATATCACTCTCGGTTCA-------CCGTCTTTCTCGTATTTGCGGGTGACTT
i caeJap4.Scaffold17739 I 1981 I 1480

a score=-11947.000000
s ce10.chrX             4603959  7 + 17718866 GATGG------------------------------------------TT
s cb4.chrX              9926999  7 + 21540570 GAGCA------------------------------------------TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1533172  7 -  4500979 TGGTG------------------------------------------TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   268227 46 +   386604 TCACATTCTGAAttgttttgttattttatA---ATTTACATACAACGTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2860943 47 +  4147112 TGATGtcctaaaaaaataaatctaaCTAAATGCAATTGAATATGA--TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  100416 1480 -   130595 I

a score=33952.000000
s ce10.chrX             4603966 108 + 17718866 CA----------TATCAATCATGAAGTCAAAGTTGTACAGCTTATCCTTTTCCGGATGTCCATCTCTTCGAGGATCACGATTGAACTCTTAAACACATTATTTAATCAACTTTGTTAA
s cb4.chrX              9927006  97 + 21540570 CA----------TATCAATCATAAAGTCGaaattaaacaatttatccTTTTCTGGATGTCCGTCCCTTCTAGGATCACGGttgaactctgaaa------atttattttat-----ttt
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1533179 107 -  4500979 CA----------TATCAATAGCCCAATCGAAGTTAATCAGTTTGTCCTTTTCCGGATTGCCATCTCGACGTGGATCtcgattgaattctgaaataaa-cacCAGTTCGATAACGCTAC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   268273  94 +   386604 AA---CTCACATGATCAACCATATAATCAAAATTGAACAACACGTccttttctcgattt---tctctGCGAGGATCTCGGTTGAATTCTGCAA------ATTT------------TAA
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0      2860990  93 +  4147112 CAGTTCTTACATTGTCAACTgtgaaatcgaaattgaacAATACATCTTTTTCTGCGTTT---TCTCGGCGAGGATCTCGATTGAACTCTGTAA------A----------------AA
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold17739  101896 101 -   130595 ca----------taTCAAGCATAAAGTCAAAATTGTAGAGCTTTTCCTGGTCGGGATGGCCGTCTTTTCGTGGATCACGATTAAAGgctgaaaaaattcatttttttttta-------
i caeJap4.Scaffold17739 I 1480 C 0

a score=-9001.000000
s ce10.chrX             4604074 16 + 17718866 ------------AATTGATTTTGAAA---TA
s cb4.chrX              9927107 14 + 21540570 ------------gatcAGTTATTAGG-----
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1533290 12 -  4500979 ------------CTTTGGTTA--AAA-----
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   268377 16 +   386604 -------------TACTATCATCAGAGAG--
i caeSp111.Scaffold622  I 10 C 0
s caeJap4.Scaffold17739  101997 21 -   130595 aataaaacttcCGTGTCATTA----------
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2861083 28 +  4147112 I

a score=-59947.000000
s ce10.chrX             4604090 221 + 17718866 AAACTAACCTTTTTGGAAAACAAATGCATATGGATCTGCAGCGTTG---TCATCTCGTTCTTCATCAGAAGATGTCAGAGAATCTTCACTAGGTGTTGGAATGTCACCTT-------------------------------------CGATG------------------------------------------------------------AGCTCCGGAG-----------------CAAACT-----------------TTTTTTTCGGCCGTCCACA------------------------------------------------------AGGCTTCTTTTTGC---------TTTCTTTGATT------A--------------------GTT-----TCGTGGCAAC------------------------------CACTTC-ACCAC-----------TAGCATC-----CTCATCGAAACTTTCAT
s cb4.chrX              9927121 240 + 21540570 CTACTCACCATCCTCAAAAACAAAGTCATAAGCAC---CAGCACGT---CTCTCCTCTTCCTCTCCTGACGACGTCAAAGAGTCTTCACTCGGAGTCGGAATATCTCCGT-------------------------------------CAATG----------------ATTTCTGGTGTACCTTGTCTTGATGAAA---------------------------------------------GATT-------------GGAGCTTGGTT-----------------------------------------------------------------------TCTCTGTCT---------TGTCCTTGACA------GCCGGA---------------ACT-----TCTTCATCAC------TCTCACC-----------CTCCGACTTTTC-CAATC-----------CACAATCA----ATCATTGAAGctttttt
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0  1533302 440 -  4500979 ATACTCACCGTCTTGGAAAACATGATCATATGGGT---CAACTCCT---TCATCAACTTCTTCACCAGATGATGTTAAAGAATCTTCACTCGGTGTCGGAATATCTACATTATCTCGAGCCAAAGCC---------GAAGCTGCTTCCAATGTGAGTCCACTTGAAGCACTCTTCTTCTGTCTCTTCCTGGCCAAACTTTC-----------ATCTTCACTC-------------TCGTCGGATTCAGCGGAGTCGTCGAGGCTAGGGTCGATATTCGATATTGCCTTCACTTTTCTATAGAACTTTTTTGGCGGAGTATCTTCCTCAACTTCAGGAGCATCTTTGTCTACAGCGACATCTCCTTCGTCTTTCTTGCCGGATTCTTCATC--CTCTGAT-----TGTTCATCATTGGAAGATTCATCGGTG-----TATCCGGATTCATCGGAATCGTCACTACCGTCAGAATCG----AG-ATCGAGGTCGCTGT
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold622   268393 258 +   386604 TAACATACCTTTTCGGAAGACAAAAGCAAATGGAT---CAGCGTTTGAcgcttcttgttcttctccaGACGATGTCAATGAATCTTCACTCGGAGTTGTTATATCACCTTCT------------------------------------------------------GCACGTTCGACTGG--------CAAAGAATCTTTCGA---------AACGTCTAGT----------------TCCGATT-----------------CTTTG--------TTAACA----------------------------------------------GACTT-------ATCAGCATCA---------TCCCCAGATCC------A-----------------TCTGAT-----TCATGACCAC---TAGATTCAGCTGAG--------------TCTTC-AAGAC-----------CAGCGTCA----ATAACCGACGTTTTGAC
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0      2861111 364 +  4147112 -AAACTACCTTCTTGAAACACGAAATCGAATGGGT---CTGCATTT---GCATCGTCATCTTCCCCAGATGAAGTCAAGGAGTCTTCACTTGGAGTTGTGATATCTCCTTCTTCCCTGACAATtgcctttttctcttcatctttcttcaaAG--------------GCTCATCAGACTCGTCCTCATCTGCAGAATCTTCCAAACTACAGTCAACTTCGGACATTTTCATTCgctttgtcttttt-----------------ctttggaCGTTCTTCAACA-----------------------------------------------ACTTCTGCTGGCTCAacatca---------ctttctttttc------actggA-----------CTCCGATGGAGGTCTTGGTCGT-----GGTTTAGTTCTGATAGTTACTCC--TTCATC-AAGAA-----------AATCATCATCGGAGAATC--CGTCACTAT
i caePb3.Scfld02_0      I 28 I 55
s caeJap4.Scaffold17739  102018 239 -   130595 CAACATACCctcttcaaaaacaaaagcatACGGAT---CACCTTCG---TCCTCCGATTCTTCATCGGTAGAAGTCAGCGAGTCTTCACTTGGCGTCGGAATGTCACCAT-------------------------------------TCACA----------------ATTTC---------------------------------------CACGTCGAGA-------------TCGTCATACT--------------TTACctttttcggccttcc-ca-----------------------------------------------------------tcgccttct---------tcttcttcttt------ttcagatatttactcttctctgtt-----tctCCATTCA---CAGTTTTCGTCTCG--------------TTTTC-ACTAC-----------TCTCGC-----------------------
i caeJap4.Scaffold17739 C 0 C 0

a score=-5432.000000
s ce10.chrX             4604311 35 + 17718866 TCGAAACATC----TGATCCATCCGTTTTTGGC--ACGTTC
s cb4.chrX              9927387 35 + 21540570 CTGATACTTT---GTCCACTG-CTGTTTTTGAT--ACTTCT
i cb4.chrX              I 26 I 11
s caeRem4.Crem_Contig0  1533769 29 -  4500979 CCGATTCGTC----TTCACAA------TCCGAC--TCATTT
i caeRem4.Crem_Contig0  I 27 I 11
s caeSp111.Scaffold622   268657 21 +   386604 CCGAAgcatt----ttttccg----------------tttt
i caeSp111.Scaffold622  I 6 I 8
s caeJap4.Scaffold17739  102257 35 -   130595 TGGATTCATCAGAGTCTTCCG------TTCCACTGTCGtct
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2861475 55 +  4147112 I

a score=-25787.000000
s ce10.chrX             4604346 53 + 17718866 -----TTTCTTTTCA--TCTTTCTCTTCTTC------TTTTGCAAT-------TCGTTATCTCGAGAATC---GTT-------------------------
s cb4.chrX              9927433 42 + 21540570 -------CTTCgctgatttttcagtttgttc------aatttcaat---------taCATCATC-------------------------------------
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0  1533809 42 -  4500979 -------TATGGGAAAATCAGCAGCCTCTCC------TTGTGCAAT---------GATGTCGTT-------------------------------------
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   268686 45 +   386604 ------TACTTGT----TCAGagtcactttc------tttttcact---------ctcTTCAGAAGAGTC-------------------------------
i caeSp111.Scaffold622  I 8 I 12
s caePb3.Scfld02_0      2861530 66 +  4147112 -----TTCCTCGTCA--TCAGAATCTTCTTCATCCGATTTTTCACCATCAGACTGCTCTTCTCCAGAATCAAG----------------------------
i caePb3.Scfld02_0      I 55 C 0
s caeJap4.Scaffold17739  102292 79 -   130595 ttaaatttct-------tcttctttttcttcagtg--tttttccct-------ttgttttcgctagattc------ttcttgtttctGGTCGGGGATTTTT
i caeJap4.Scaffold17739 C 0 C 0

a score=-20164.000000
s ce10.chrX             4604399  42 + 17718866 ----------------------------ATCACTTTCACTGGAGTCACGA----------------CTTCTATTC-------------------------------GTTGTCTTTTT-----------
s cb4.chrX              9927475  32 + 21540570 ----------------------------CTC---------AGAACCATCA----------------CTTTCTCGT--------------------------------TCGGTATCTT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1533851  41 -  4500979 ----------------------------GTCTTTTTCTGTAACAACatca----------------cttttcttc--------------------------------tctgcCTCGT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2861596  47 +  4147112 ---------------------------------CTCAATTGGGAACGcgg----------------cttctccttc------------------ttcaataA---TGTCGTCATCTT-----------
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17739  102371 128 -   130595 CTTGCTTCTCCGATGAATCCTCGTCAGAATCCGTCTCATCCGAACTACTGTCTAGGTCAGAAAGATCTTCGGCTTCAGACGACCCTCCAGAAGATTCAAGGGACTCATTGCCAGGCTGCGAACCTTCA
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   268731  12 +   386604 I

a score=-162125.000000
s ce10.chrX             4604441 279 + 17718866  
s cb4.chrX              9927507 241 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0  1533892 430 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622   268743 379 +   386604  
i caeSp111.Scaffold622  I 12 I 167
s caePb3.Scfld02_0      2861663 338 +  4147112  
i caePb3.Scfld02_0      I 20 I 40
s caeJap4.Scaffold17739  102499 395 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-13200.000000
s ce10.chrX             4604720 66 + 17718866 AAACCAGCGAAT------TTTTTTTCTACCAGCAGATTTCAGTG--------GACGAGGAGCTTTGAGTT--TTGAGTTTGG
s cb4.chrX              9927751 54 + 21540570 GAACCATTCAAT------AGTCCGTTTT---TTAGTGTCCAA-----------------TTCCTTGAGTT--TCGGTTCCTT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1534325 66 -  4500979 GAACCATTCGAC------CTTGCAACTTGGACAAAGTTCCAAAG--------GTAGATCCTCCTTCACTT--TCTGATTCAA
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0      2862041 73 +  4147112 gcGTCTTTAAAC------CATTTGGCTT---TAGGCTTTTGAGGTGCTAGTCGTGCATGTTTGGTCACTTCGTCAGAGTCAG
i caePb3.Scfld02_0      I 40 I 1
s caeJap4.Scaffold17739  102894 57 -   130595 AAACCATCGCACACGCTTCTTTTTGCTTGGAATGCACTTTGGCG----------------CCTTTTTCTT--CCG-------
i caeJap4.Scaffold17739 C 0 C 0
e caeSp111.Scaffold622   269122 167 +   386604 I

a score=239817.000000
s ce10.chrX             4604786 448 + 17718866  
s cb4.chrX              9927805 557 + 21540570  
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1534391 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 382
s caeSp111.Scaffold622   269289 445 +   386604  
i caeSp111.Scaffold622  I 167 I 2
s caePb3.Scfld02_0      2862115 449 +  4147112  
i caePb3.Scfld02_0      I 1 I 2
s caeJap4.Scaffold17739  102951 455 -   130595  
i caeJap4.Scaffold17739 C 0 C 0

a score=-7434.000000
s ce10.chrX             4605234 35 + 17718866 ----ACCAGTTTTCAAAATTAA------AA-------AAGAAAATGTGTTT-C
s caeSp111.Scaffold622   269736 31 +   386604 ----ATTactgtt-----tttg------ga-------attcaaagTTCCTCAA
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2862566 36 +  4147112 ----ACAAATTTG-----TTTGTCCGGAAA-------AGTTAGATTTGATT-A
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17739  103406 39 -   130595 ACTCACAAGTTGA---AGTTAC------AATTACCCCAATTATAATTG-----
i caeJap4.Scaffold17739 C 0 C 0
e cb4.chrX              9928362 40 + 21540570 I
e caeRem4.Crem_Contig0  1534838 382 -  4500979 I

a score=82251.000000
s ce10.chrX             4605269 242 + 17718866 ACTAACCGCATCGTATGCATTGAGTGTAAGTTCGC---GGCCTTCCATTCTCGCTGGGTTCATGAGCACTTCCTCGAGATCGTAATACTGCTCACTCGTGGTTGGGAGTTTAATCTCCGGTTTACCCTTGTACGAAGGT---ATTCCTTCCTTC---------GCTCGTTGGTACAGGCTTTTCGTCTCACT---TTCATTACCCGATTCAAGGAGATTCACACGATGACCTTTGTCTCTAGTGGGTGGGCGGACGGGAA
s cb4.chrX              9928402 244 + 21540570 ACTCACAGCATCATAAACATTGAGTGAAAGCTCTC---CAGATTCCATTCTTGCCGGATTCATGAGTATTTCCTCCAAATCATAATACTCTGCACTTGTTGTGGGCAACTTGATATCCGCCTTTCCTCCTCCAGAGG-----CCATCATTTTCTGA-------GCACGCACATACAAACTCTCGGTGTCTTCCTTGTCTTTCTTGAAGTCTAGAAGATTGACACGATGTCCAATGTGTTTGATGTGTGGACGAACAGGA-
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0  1535220 244 -  4500979 acttacagaATCATACACATTCACACTCAGCTCGC---CAGATTCCATTCTCGCCGGGTTCATCAAGTTTTCTTCCAGATCGTAGTACTCCTCACTTGTCGTGGGAATCTTGATTTCCGGCTTTCCGTCTTTTGA---------ATCTTTTGCCAATTCGATTGCTTTTTTGTACAAGTCCTCCGATTCTTC---ATCATTCTCCAACTTTAGAAGATCAATGCGATGTCCACCGTCTTTGATTTGTGAACAGATCGGG-
i caeRem4.Crem_Contig0  I 382 C 0
s caeSp111.Scaffold622   269767 236 +   386604 ACTTACAGCGTCATACGCATTCAATGACAGTTGGG---AACCTTCCATTCTAGCCGGATTCATAAGAACCTCTTCAAGTTCGTAGTATTGTTCACTTGTTTCCGGCAATTTGATGTCCGATTTGCCATCTCTCAC---------GTCTTCCACA---------GCAATCTGGTACAAACTTTTTGGGGCATCATCTTGGTCACCA---TCAAGAAGGTTCACCCGATGACCGTCGTCTTTGACTGGTGGACGGACTGGGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2862602 242 +  4147112 ACTTACGTTGTCGTATGCGTTTAGTGATAATTGAGTTCCTCCTTCCATTCTGGCAGGATTCATCAAAATCTCCTCAAGTTCGAAATATTGCTCGCTGGTCTCCGGTAACTTTATGTTTGTTTTGCCTTCCTCTGC---------TTCTTCAACT---------GCTTTTTGATACAAAGTTTTAgactcctcttcttctttttcaaggCCAAGAAGGTCTACACGATGACCAGTAGATTTGACTGGAGTGCGAACTGGAA
i caePb3.Scfld02_0      C 0 I 10442
s caeJap4.Scaffold17739  103445 242 -   130595 ACTTACCATGTCATAAGCATTCAGTGTGAGTTCTC---GGCCTTCCATTCTTGCCGGATTCATCAGCGTCTCTTCCAGCTCGTAGTACTCACTGCTGTTCGTCGGAAGTTTGCACTCTCCTTTTCCTTCTCCTGGTTTTCCGAGTTCTTCCAGC---------GCCATTGCATAAAGATTTTTC--CTCTGAGATTGCATTTTT----CCGCGCAAATCCACACGATATCCGGTGTCACGGATAACGGGACGATTTGGAA
i caeJap4.Scaffold17739 C 0 C 0

a score=-7385.000000
s ce10.chrX             4605511 123 + 17718866 TAACTCTGGTAATCACTTTTT--------------TC-----TTTTCACTCGACGGTCTGGACTCTTCGCTTTTTTCTG---------AAGCTGATGAAACCTCGGAATCACTTGAAGAATCCGATGTGTTTTCTTCGGCGTTCTGAGAAA
s cb4.chrX              9928646 118 + 21540570 --ACCA------TCATTGGTT----TCGGTCGGGATGGCGGAGATTCTTCTGCTGACTGTTCCTCAT--CTTCTATGCT-------------------AGGAGTTGAATCTCTCGAAGAGTCCGAAGTTTCACCTTCtgggttctgaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1535464 134 -  4500979 --ACTT------TTACAGGTTTA--TTCACCGGAACT-----GACTCTGATACAGGCGACGATTCATGACTTTTATGTTCGTCTTCAAGCAgcgaagaagaagttgagtCGCTTGAGGAATCCGAGGTGTGATTTGCGGGGTCCTGAAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   270003 124 +   386604 TAACCC------TGAATggtt--------------ct-----ttttccttctccgGTGTTGATTCACGGCTTCGTTTGTCTTCACCATGATCCGAAGATGACGACGAATCGAGagatgaatcagaagaatgaCCCTCAGACTTCTGAAA--
i caeSp111.Scaffold622  C 0 I 2519
s caeJap4.Scaffold17739  103687 123 -   130595 CCACCC------GCACCGTTTTGGCATCGTCGGAATG----------------GGGTGTCGACTCGTGActgtcttcttcttcatcgGATGCTTG---CTCATCCTGATGATTTGAAGAGCTCGATG---GACCTTCGGTTTCCTGgagaa
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I

a score=30.000000
s ce10.chrX             4605634 12 + 17718866 TGGAAAATTAGA
s cb4.chrX              9928764 12 + 21540570 tgaatagtttga
i cb4.chrX              C 0 I 17954
s caeRem4.Crem_Contig0  1535598 12 -  4500979 TGGACAATTGGA
i caeRem4.Crem_Contig0  C 0 I 4
s caeJap4.Scaffold17739  103810  9 -   130595 --aacaacatt-
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeSp111.Scaffold622   270127 2519 +   386604 I

a score=1876.000000
s ce10.chrX             4605646 15 + 17718866 GAACAATTTTATTTT
s caeRem4.Crem_Contig0  1535614 15 -  4500979 aaacaattttattgt
i caeRem4.Crem_Contig0  I 4 C 0
s caeJap4.Scaffold17739  103819  9 -   130595 ------ttttgtttt
i caeJap4.Scaffold17739 C 0 I 13605
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   270127 2519 +   386604 I

a score=229.000000
s ce10.chrX             4605661 18 + 17718866 TTCCAAAT-----ACTTTTTTTG
s caeRem4.Crem_Contig0  1535629 21 -  4500979 t--cAAATAACTCACTTCTTCTG
i caeRem4.Crem_Contig0  C 0 I 5688
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   270127 2519 +   386604 I

a score=0.000000
s ce10.chrX             4605679 4060 + 17718866  
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   270127 2519 +   386604 I
e caeRem4.Crem_Contig0  1535650 5688 -  4500979 I

a score=3033.000000
s ce10.chrX             4609739 131 + 17718866 GTGATGAGCTCATCGACTGCGTAAAACGAACGGCAGATGTTTAGAGGGCAATAAATGCGAATTGCCAGAGCAGGCAGACAACAGGTGCTGCACAATAGAGCAATGATCTTTGAAGTCTCACATATCCGACA
s caeSp111.Scaffold622   272646 123 +   386604 GTGGTGAGCAGACC--CTTTATTACAAGTAGAGCAGATGTTCGCAGCGTAATAAAAA------ACGAGATATGCCATATGACAGGTGCTGCACAATGGGCAATTAGTCTTTGAAGTTACGAACGTCTGTCA
i caeSp111.Scaffold622  I 2519 I 1979
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeRem4.Crem_Contig0  1535650 5688 -  4500979 I

a score=0.000000
s ce10.chrX             4609870 1054 + 17718866  
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   272769 1979 +   386604 I
e caeRem4.Crem_Contig0  1535650 5688 -  4500979 I

a score=5561.000000
s ce10.chrX             4610924 205 + 17718866 AACTCCAATGGGGGATATGGTAAAGCAATATACAAAA-CGATGAATCCACCGCTGTAACACCATAT---TTACTCTTACTATTAAAATTAAT-CACATCATTATCGGGTCAAATAACACACTATTGAGATCGTCGAGTATTCCTACGCTGGGGGTGGCTGGGCGGTGATTATCAGTATTAGTATCAAGTTTAATCACATTAGT------ATCATCT
s caeSp111.Scaffold622   274748 205 +   386604 AGTTCCAAAGAAGAATACGGCGAAGCAATGAGTAAAAACGATGCATCAACCGCTGTAAAACAGAATACTTTATTC--------AAGATTAATTCACATGGAGAATGGGTCAAACAACAGACTATTGATATCATCCAGGATTCCAACACTTGGGGTGCAAGATCTTGGATTAT---TGTTTGAGTTGATATCAATTACATGATTGGGGAAATCATCT
i caeSp111.Scaffold622  I 1979 I 307
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeRem4.Crem_Contig0  1535650 5688 -  4500979 I

a score=0.000000
s ce10.chrX             4611129 188 + 17718866 TCATCGTCATCTTCGAAACTTTTACCCACATCAAAAATGCTTCGTTGAAGATTGTGAACAAGCATTTCTGAAGTGCATTGATTAGTTGAATTTTGCAAATTCAAGTAGCCAACCTTCCGTATCATCACTCTTCATCACATCATCAATCATATCATCCATATCCAGACTAACAAATCTATTTGTTCCAA
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   274953 307 +   386604 I
e caeRem4.Crem_Contig0  1535650 5688 -  4500979 I

a score=2027.000000
s ce10.chrX             4611317 37 + 17718866 CATATCCCATAATTGGGTCATCATACAGAATTGGCGA
s caeRem4.Crem_Contig0  1541338 37 -  4500979 CATACCCCATGATGGGGTCATTGATAAGAATTGGTGA
i caeRem4.Crem_Contig0  I 5688 I 445
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   274953 307 +   386604 I

a score=0.000000
s ce10.chrX             4611354 271 + 17718866 GCCGTTGTCGTCCTCATTCAAGGCTTCTTCCCTATCTGAAAAATTGTCTATTAAAAAAATGTGTTACTCATTGAGGCTAACAGTAACCATAAATATTAATTAACGAATACTCACGGTGTACACCTGTTCGAATTGGTCTGGAAGATGGGCCAGGTTCAGACGTTGATGGTTGAGAGAATATGTCAACTGGGCTAGATACTTGTTGAACATATTCATGATTGATGATCGGTGGAGTGGTGAGTGGAGATGAGTGTTCTTGTGGTGGTGTGAT
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeSp111.Scaffold622   274953 307 +   386604 I
e caeRem4.Crem_Contig0  1541375 445 -  4500979 I

a score=507.000000
s ce10.chrX             4611625 166 + 17718866 GAGATGAGTTGAAATATCA----------AAATCACTAGCTGGTGGCGATGAGCTTGATGAGCTCATTCCAGTTGTGATGGAAAGTGATTGAGATTGCATTCCGCTTGACGACGACTGTCCCGAAGATGTACCTTGTGCAGGAGAAGCGTCAGGTGTGTGCATTCCGTTAGTGTGA
s caeSp111.Scaffold622   275260 168 +   386604 GAGATGCATAAAAATGTGAGGAGAGCATCACATCAGTGCTCGGagatgaagaattgaaagagtTGAGATCAGTAGAAACAGACAATGGCTGCGAATGAGATCCCACATAAATCGGCTGATCGGAGAGGGAATGTTCAGTTGAATGGGGTTCAGATGT--------TGATGCTATGT
i caeSp111.Scaffold622  I 307 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I
e caeRem4.Crem_Contig0  1541375 445 -  4500979 I

a score=44.000000
s ce10.chrX             4611791 12 + 17718866 ----TTGTTAGTTGGC
s caeRem4.Crem_Contig0  1541820 12 -  4500979 ----TTTTCAGTCACT
i caeRem4.Crem_Contig0  I 445 C 0
s caeSp111.Scaffold622   275428 16 +   386604 CTGTTGTTCCGTCTTC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  103828 13605 -   130595 I
e cb4.chrX              9928776 17954 + 21540570 I

a score=-601.000000
s ce10.chrX             4611803 66 + 17718866 TTTCT-------CTTCTTGGCATCACCTTCCGGGCCGGATGCAGT---CTTTCTTTTCTTGAAGG------TAGTCACTGTA
s caeRem4.Crem_Contig0  1541832 69 -  4500979 TTTTG-------CTTCTTTGCCACAGGAGCCACGTCAGTCGAATGACACtttcttttcttgaata------cAGTGCTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   275444 70 +   386604 CTGtgtcttcatcttctttgcAACTGGA------TCAGAGGTGGtgcattttctcttcttgaaaG------TAGTATCCGTA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   19105 75 +   130595 TTTCC-------ATTTTTGGAAGTAGACTCCTCCACCGTCTTGGCAGGTTTCCGCTTTTTGCTTGGCGGCTTGGTTATTGTT
i caeJap4.Scaffold17739 n 13605 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e cb4.chrX              9928776 17954 + 21540570 I

a score=20361.000000
s ce10.chrX             4611869  93 + 17718866 GTTCTTCCTTCACGAATTGCAATGAGACGTTTGCGGAATCGACCGTGGAGTGCAGGTTCCACTGAAAA---------------ATAATACGTTTAATTAAATGAAATG
s cb4.chrX              9946730  98 + 21540570 GTTTTTCCGATTCTCACGGAGTGCAAACGTTTGCGAAGGCGTCCATGAAGTGCAGATTCcactgaaaa-----taatga----agatTGCATTCAA-TTAATAGTTTC
i cb4.chrX              I 17954 C 0
s caeRem4.Crem_Contig0  1541901 102 -  4500979 GTTCTTCCTTCTCTCAAAGCAATCATTCGTTTACGGAATCGTCCGTGAAGAGCGGgttccactgaaaa---attagtGATTAGACAATACATCTA---CATTTGTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   275514 104 +   386604 GTCCTTCCTTCCTGTATGGCAGCCAAACGTTTTCGGAATCGTCCATGAAGAGCTGGttccactgaaaaagaagtattATTTAGAAAGT-CAtcac---aagaaaaata
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739   19180  94 +   130595 GTTTTGCCAGCGCGAACTGCAGCCAACCTCTTCCGGAAGCGACCGTGTAGAGCTGGTTCCACTGAAAA-----T---------GAAAtactttttatttatataaata
i caeJap4.Scaffold17739 C 0 n 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I

a score=10769.000000
s ce10.chrX             4611962 135 + 17718866 GTTTGTAAGATTG-----------ATAAACTTACAAAGTGGAGTGGAAAGTACATCTTCCACATTGATTTCTGGCACACATGGCTCATCCTTCATCAAATGTGTTAT-CTTGTCATAG-AAGTCCATATACTCCTCCATATACTCATC------
s cb4.chrX              9946828 118 + 21540570 GT----------------------AACGACTTACGCGATGGATCCGCAATTATATCATCCACATTAAGTTCGGCAGGGCAGGGATGCATGTTCATTTC--GAGCTCCATTTCAAGTAGAAACTCAAAATAGTCCTGTT------CGGT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1542003 120 -  4500979 AT----------------------ATCAACTCACATTCTGGATCAGCAAGAGCATCTTCCACTCCTATTTCCGCTGGACACGGGTTGTCTTCCATCTCCTGAGTTAC-TTTCACACAG-AACTCAATGTAATTGTCTTCA----CAGG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   275618 116 +   386604 gt----------------------tttcactTACAGATTGGATCGGCAAGAACATCTGCTACTCCAATCTCAGCTGGACACGGGTTttcctccatttcttttgttat-tttcatatGG-AACTCCATGAATTCATC--------CAAA------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  117433 146 -   130595 GTTTTTAAGGTAAGTAAAAGAAATTAATACTTACACTCTGGATTCTCAAGAACATCGTCGACACATATTTCTGGCTTGCACGGCTCTTCAATCATCATCTGCGATAT-AGACTCGTAG-TGCTCCAGATATTCCTTTT------CAAAGTCTTC
i caeJap4.Scaffold17739 I 13605 I 17
e caePb3.Scfld02_0      2862844 10442 +  4147112 I

a score=-1065.000000
s ce10.chrX             4612097 20 + 17718866 TGGTGGTGGTGTGTCTGCTT
s cb4.chrX              9946946 20 + 21540570 GACTGGttgatcttcttctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1542123 15 -  4500979 GAATG-----CCATGTCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   275734 19 +   386604 GAGTG-CTGTCTATTCCCAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117579 17 -   130595 I

a score=4843.000000
s ce10.chrX             4612117 43 + 17718866 TATCAAACAACTCTTCAATCGTCAAAGATGGCAACGCCGCTAT
s cb4.chrX              9946966 43 + 21540570 catcaaaaaTCTCTTCTACAGTCAACCGAGGCCATGCAGCGAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1542138 43 -  4500979 CTTGGAAGTACTCTTCCATTGTAAAAGAAGGAAGCGCTGCAAT
i caeRem4.Crem_Contig0  C 0 I 926
s caeSp111.Scaffold622   275753 43 +   386604 AACTGAAGTATTCTTCTGGAGTGAAACTTGGAAGTTCAGCAAT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  117596 40 -   130595 TACCCAAAGCTTCTTC---AGGCAATAGAGGACCAACAGATAT
i caeJap4.Scaffold17739 I 17 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I

a score=-3650.000000
s ce10.chrX             4612160 35 + 17718866 --GATATTGATC----GTCTCGCGAATGTGCTTGACACGGA---------------
s cb4.chrX              9947009 35 + 21540570 ------TTCAGCTACAGTCTCCCGAATGTGCTTCCAACGGA---------------
i cb4.chrX              C 0 I 4138
s caeSp111.Scaffold622   275796 35 +   386604 --CTCTTTGATCAACGAT----CGCATTCGTTTTGCTCGAG---------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  117636 53 -   130595 GACATATCGAAT---GATGTCACGTACATGATTTGTTCGAGCTCCACCAATATTGG
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeRem4.Crem_Contig0  1542181 926 -  4500979 I

a score=329.000000
s ce10.chrX             4612195 10 + 17718866 GCACCGGACT
s caeSp111.Scaffold622   275831 10 +   386604 CGACTGGATT
i caeSp111.Scaffold622  C 0 I 774
s caeJap4.Scaffold17739  117689 10 -   130595 GCAGAGGACG
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeRem4.Crem_Contig0  1542181 926 -  4500979 I

a score=2389.000000
s ce10.chrX             4612205  97 + 17718866 CATCTTAGGTGC----------ATTTTGTCCGTCGTCCGAGGCAAGTTTGTCCTTGAGAATCTTCAAAATCTTCGCTTCATCTTC------TGGTTTAGGATCAGCAGACTTC
s caeJap4.Scaffold17739  117699 112 -   130595 TTCTGTAGGCATCACAAAATCACTTTTGTTCGCC-TCAGACGCCATCTTTTCCTTGataatttgcaaaattttttctgcatctTCCTCGCTTGATTTAGAAGTAGGAGGCTTC
i caeJap4.Scaffold17739 C 0 I 2792
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeSp111.Scaffold622   275841 774 +   386604 I
e caeRem4.Crem_Contig0  1542181 926 -  4500979 I

a score=0.000000
s ce10.chrX             4612302 107 + 17718866 ACAATTGTCTGCTTTGGAGCAACTCTCAGCACATTTGCTTGAGACTCGTGATGATTCATCGGAGGAGAAGTCATAAGCACAGTGTGAGTTGCCCCAGTTCTCTGCAC
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeSp111.Scaffold622   275841 774 +   386604 I
e caeRem4.Crem_Contig0  1542181 926 -  4500979 I

a score=956.000000
s ce10.chrX             4612409 59 + 17718866 CTGCCCTTGTTGAACATACTGTTCTTGCATCGA----------------ACGTTGTTGTGCCATTTGCATCATTG
s caeSp111.Scaffold622   276615 70 +   386604 CTGCTCTTGCTGACCATGATGG----GCATCAACATGTCGGATCTGCGCATGTTGATTTTGCATTTGC-TGATTG
i caeSp111.Scaffold622  I 774 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeRem4.Crem_Contig0  1542181 926 -  4500979 I

a score=-9599.000000
s ce10.chrX             4612468 536 + 17718866  
s caeRem4.Crem_Contig0  1543107 563 -  4500979  
i caeRem4.Crem_Contig0  I 926 I 3186
s caeSp111.Scaffold622   276685 534 +   386604  
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I

a score=1457.000000
s ce10.chrX             4613004 263 + 17718866 TGAACTCGGTGGGTCTGCTGATTGGTCAC---------TTGGATCTGATTTTGAAGTTGCAACGGTCCCTGCTGTTCTACAGAAGTTTGTTGAACAATCGATGTTTGGTAATTCA---------TCTGCACTTGCTGTTCGCTCATCGGATTTTGAAGATTGGTATTGTCCAAGACAACCTCATACTGCTCGTTC----ATCGTTGACAGCGAACTTGC--ATTCGGTTGTTGTTGTTGTTGCACCTGATA-----GGCATTTCT-ATTTTG---TTGCTGAGAAATCATCTGTTG
s caeSp111.Scaffold622   277219 266 +   386604 TGAACATGTTGCACTTGCTCCTGTCTCActtgattattttgaatctgaTTTTGGACATG---------ATGTTGTTGCA------TCTGTTGACCGTT---TTGATGGTACTGCATTTTCTGGTTCTGTGCTTGCTGAT---TCTTTAGATGTTGATGA---------ACCGAAATAACTGGACCATGACcattttgcaattgctgattctgcatttgctgattctgcatttgctgattttgcatttgctgattctgcaattgctgattttgcCCTTGTTGATTCAGCATCTGCTG
i caeSp111.Scaffold622  C 0 I 956
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeRem4.Crem_Contig0  1543670 3186 -  4500979 I

a score=0.000000
s ce10.chrX             4613267 374 + 17718866 CTTTCCTTGAACGTAATGTACAAAGGATCCTCGACTTCTTCTATCCACGTGAGATTGCTTTTTCGGAGTAGGTTTACTTGTCCCATCAAGAAGATGCTTTTCAGTTTTGGTAAACTGTTTTTGGCCTCTAAACTCATCTGGAGAACTCAATACCGATGCAACCACGTTGTTAATGACTTCAGTGACCTTGTCTGGAGAATCAGGCTGCTCCAAGAAGTTTTCCGGGAACTGGTCAGATGGTGCTTCTTCAACTGGTGCTTGCAGAGTTGTAGACTGATGCTCCTGTGACGTTTTGTTAGATTGCAATGAGGTCAATTTGATTTGCTGCTTCATCGGAGCATAATGGATGGTGGATTGATGTGCAGGGCCCGAAC
e caePb3.Scfld02_0      2862844 10442 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeSp111.Scaffold622   277485 956 +   386604 I
e caeRem4.Crem_Contig0  1543670 3186 -  4500979 I

a score=2059.000000
s ce10.chrX             4613641 43 + 17718866 TTTGTTGAGTTGGAACTTGTTGCAAATTTACTTGCCGATGTTG
s caePb3.Scfld02_0      2873286 43 +  4147112 TTGGTGGAGCTTGTACTTGTTGCCCACTTGCTTGTTGATGCTG
i caePb3.Scfld02_0      I 10442 I 2281
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeSp111.Scaffold622   277485 956 +   386604 I
e caeRem4.Crem_Contig0  1543670 3186 -  4500979 I

a score=0.000000
s ce10.chrX             4613684 451 + 17718866 GATTGGCTCTTGTTTTGCTGAACCTTGCTGCATATGATTCTTTTTCTCATGCACTTGTGCTTCTTTCTGATGGTGACTGAACTTTTGCATTGTCTGAGGCTCCGAGTATCTCTGCAGCTTAGGCGACAGCATTACAGACTGTTGCAATGTTGCGAGGTCAATTTGAGATTGTCCAGAAATATTGTTGAACTGGTTGGGACGATTCAAATGTTGCTGTTTGAGCAACTTGCCAATGGAAACTTCCGGAGAATTTTGCATTTGATAGGCATGACCTGAAAAATTAAAATTGTTTGATACTCGTTTTAAATTGGTGTACAAACCTGAACTGCTGGCATTCATGTCCTGCTCAAACGCATTTTTCTTCTTGGGCTTTGCTCGTGACCTCTTTGGAGGTGGCAAAGGCGGTGGTCCTTGATTAGTCAATCCGTGGCTGGTACCGTTAACACCAACA
e caePb3.Scfld02_0      2873329 2281 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeSp111.Scaffold622   277485 956 +   386604 I
e caeRem4.Crem_Contig0  1543670 3186 -  4500979 I

a score=2044.000000
s ce10.chrX             4614135 713 + 17718866  
s caeSp111.Scaffold622   278441 758 +   386604  
i caeSp111.Scaffold622  I 956 C 0
e caePb3.Scfld02_0      2873329 2281 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I
e caeRem4.Crem_Contig0  1543670 3186 -  4500979 I

a score=-1227.000000
s ce10.chrX             4614848 34 + 17718866 AATGCATATTTCTGTGCAAATTGTTCAAC--AGAGA----------
s caeRem4.Crem_Contig0  1546856 34 -  4500979 AGTCCATAATCTTTCGCATATTGTTCCAT--ATCGA----------
i caeRem4.Crem_Contig0  I 3186 I 1
s caeSp111.Scaffold622   279199 36 +   386604 ----------TATGCAGATAATGCTCCATCAATCACTGGGCTGACA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2873329 2281 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e cb4.chrX              9947044 4138 + 21540570 I

a score=12749.000000
s ce10.chrX             4614882 123 + 17718866 ------------------------------------GATCCTCATG------ATCCTGCTG----------------AATATGACTGCTGCTATTAGAGAATCGGTTGTCTTTGGTG---ACCGGCATTGGATTGTAAAGCGACCCATTGTTTGCTTGTTGAGCTGAAAA--TAAAATAAACA------GTT
s cb4.chrX              9951182 133 + 21540570 ------------------------------------GATGCTCGTGGAATGCATTCTGTTG----------------ACTATGACCGTTGCTTTGCGAGAACTGGCTACTATTATTTGAAACCGACATTGCATTATACTGTGATCCATTG---GAGTGTTGAGCTGAATTGACAAACAAATCATG----ATT
i cb4.chrX              I 4138 C 0
s caeRem4.Crem_Contig0  1546891 136 -  4500979 ------------------------------------TCCACTACTGGGAT-CATCAATAAG----------------AATATGACCGTTGGCATTTGAGAACTGGTTGTCGTGGGTT---ACCGGCATCGTATTGAGAAGAGACCCATTGTTTGAttgttgagctgaaaaatgaaattaatgaGGGAAAATC
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   279235 180 +   386604 GTTGATCTTGTTTCGATCACTCCGTACTGATTTGCGAACTCTTCTGCGTCGAATTCGTAGGCTGAAGGCTGTGGAACAATATGACCATTGCTTTGAGAACGTTGGCTGTCGCTGGTA---ACCGGCATTGAATTATAAATAGACCCATTATTTGGTTGTTGTGCTGAAAT---AAAGCAATGA------ATT
i caeSp111.Scaffold622  C 0 I 20
e caePb3.Scfld02_0      2873329 2281 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I

a score=91.000000
s ce10.chrX             4615005 14 + 17718866 TTAACATATTTGTT
s cb4.chrX              9951315  9 + 21540570 TCGATA-----ATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1547027  9 -  4500979 TCAAGA-----ATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2873329 2281 +  4147112 I
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e caeSp111.Scaffold622   279415 20 +   386604 I

a score=331.000000
s ce10.chrX             4615019 2 + 17718866 TC
s cb4.chrX              9951324 1 + 21540570 -C
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0      2875610 2 +  4147112 TC
i caePb3.Scfld02_0      I 2281 C 0
e caeJap4.Scaffold17739  117811 2792 -   130595 I
e caeSp111.Scaffold622   279415 20 +   386604 I
e caeRem4.Crem_Contig0  1547036 0 -  4500979 C

a score=895.000000
s ce10.chrX             4615021 5 + 17718866 TCCAA
s cb4.chrX              9951325 5 + 21540570 TTGAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1547036 2 -  4500979 ---GA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2875612 5 +  4147112 CTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  120603 5 -   130595 tcaaa
i caeJap4.Scaffold17739 I 2792 C 0
e caeSp111.Scaffold622   279415 20 +   386604 I

a score=45504.000000
s ce10.chrX             4615026 107 + 17718866 CTTACAGATCGGGGTAACTGGCATACTGGAGTGATAAG------TAATATTAGATTCTTGCGAGTGGCATGAAACTTGACTTTCAACAGAAAGTGGTGGATAAT-CT---GGCTGTT---
s cb4.chrX              9951331 113 + 21540570 CTTACAGATCGGAGTTTGTGGCATACTAGAATACTGTGAGTTTGGCGCGTGAGAATCACGAGATGTACACGAAATATGACTTTCGACCGAGAGTGGAGGGAAGT-CA---GTTGGTG---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1547039 116 -  4500979 CTCACAGATCGGAGTTTGTGGCATACTGGAATTATGTGAGTTCGGAGCGTTGGAATCCCGTGACGGACACGACTGACGGCTTTCAACCGAATGCGGAGTGAAGT-CAGTCGTTGATG---
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   279435 113 +   386604 CTTACAGATCGGAGTTGGTGGCATACTAGACAAGTGCGAGAGTTGAGTATTTGAATCTCGCGAGTGACATGATATATGACTTTCAACGGATTGTGGTGGATATT-CA---GAAGTTT---
i caeSp111.Scaffold622  I 20 C 0
s caePb3.Scfld02_0      2875617 108 +  4147112 CTCACGGTTTGGAGTTTGTGGCAAACTCGAATTTTGAGAGCTTTGACTTGTCGAATCCCGTGTATTGCTTGAAGCTTGGCTTTCAACAGAGTGTGCCACAAAAC-CA--------CT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  120608 117 -   130595 cttaCAGATCGGGGTTGGGGGCATGCTAGACATATGAGAGTTGGGTGCATTTGATTCTTGCGACTGATACGAGATATGACTCTCCACTGATAGTGGTGCATACTGCA---TGTGACCGTC
i caeJap4.Scaffold17739 C 0 I 104

a score=1507.000000
s ce10.chrX             4615133 32 + 17718866 GAAAT-----TGATTGTTGGAAACGTCTTCATATCCC
s cb4.chrX              9951444 32 + 21540570 GGAAT-----GGGTTGTTTGGCGACGTGTCGTATCCC
i cb4.chrX              C 0 I 279
s caeRem4.Crem_Contig0  1547155 32 -  4500979 GATAG-----TGCTTGATTGCAGCAGTTTCATATCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279548 32 +   386604 GGTAA-----TTATTAGTGGCAAGACTGTCGTATCCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2875725 37 +  4147112 GCTAACCAGTTGATCATATGTTATATTCTCCAATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  120725 104 -   130595 I

a score=2645.000000
s ce10.chrX             4615165 19 + 17718866 CCATAATAACCATTCGATG
s caeRem4.Crem_Contig0  1547187 19 -  4500979 GAGTAGTATTCATTAGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279580 19 +   386604 CCGTAGTAGTCAGTAGATG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2875762 18 +  4147112 CCGTTGTAGCC-TTCAATG
i caePb3.Scfld02_0      C 0 I 1324
e caeJap4.Scaffold17739  120725 104 -   130595 I
e cb4.chrX              9951476 279 + 21540570 I

a score=-978.000000
s ce10.chrX             4615184 76 + 17718866 ATGTTTGATTGGAATACATCGCTGGCTGGTGAGGATAAGTATTGTTATCATT---ATACAG------ATGATACTGATTC---------TT------GTC
s caeRem4.Crem_Contig0  1547206 94 -  4500979 TCGATTGACCTGGATATATTGCGGCTTGCGGAGGATAAGGTTGATTCAAATTTGAGAACTGGTTTGCTTGTTGCTGATACATCTGTTGGTT------ATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279599 91 +   386604 ACGAACGTCTTTCAAATGCAACAGAAGATGGATACGAATTATGATCCACATT---AAACTG------CTGTTGCTGATCGAATTGTTGATTAATGTGATT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e caeJap4.Scaffold17739  120725 104 -   130595 I
e cb4.chrX              9951476 279 + 21540570 I

a score=-2365.000000
s ce10.chrX             4615260 115 + 17718866 AGTGTAGATTTGGCT-GGAGCCAGTATTT------------GTGGCCTCCGGC--TGAG------ATGA----GCCAAATGTGATTGGGGTGAGCATTGAAGCAACTGGAATTTAAGATGATAAGAACTTCACAGGATTT------------------
s caeRem4.Crem_Contig0  1547300 114 -  4500979 CGGGTATCGTTGATT-GAGGTTATTGTTT------------GTGGTCTCCTTT--TGAGCAAATTTCGA----GCTACATGACAGCGGTTTGAGCATTGAGGCAActggaaataaaa-------gaaatttagAGGCTTG------------------
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold622   279690 128 +   386604 GGAGTAAGTATGGTTAGAAGTTCCTGGTTGCTGAGCT-TCAGCGGCTTGTTGC--TCGATGAATTCAGA----GGTACCAGCTAATGGTTTCAGCATCGACGCCACTGAAAACAAGGTT-----TAAATATCGAGACACC------------------
i caeSp111.Scaffold622  C 0 I 5
s caeJap4.Scaffold17739  120829 142 -   130595 --AGTACA--------GAGTTTGATAATT--CGAGTTATCAACGGTCTGCTGCGGTGGCAGAGCACTGGCGCTGCTACACGTGAGTGGCTTGAGCATTGAAGCGactaaatttgaaaaaa----tatatatataaagtttaaaacaaaaaacggatat
i caeJap4.Scaffold17739 I 104 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e cb4.chrX              9951476 279 + 21540570 I

a score=-978.000000
s ce10.chrX             4615375 8 + 17718866 TACTTGTA
s caeSp111.Scaffold622   279823 8 +   386604 CAGTGAAA
i caeSp111.Scaffold622  I 5 C 0
s caeJap4.Scaffold17739  120971 6 -   130595 -aataaa-
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e cb4.chrX              9951476 279 + 21540570 I
e caeRem4.Crem_Contig0  1547414 18 -  4500979 I

a score=-222.000000
s ce10.chrX             4615383 49 + 17718866 CTCACGACTCTGAT-GCTTTTTAG---------------GC--GGATCAGATGTTGGTTGCATAGAA
s caeRem4.Crem_Contig0  1547432 58 -  4500979 CTTACGACTTGGGT-GCTTTTCAGCTTGATTTTGGTTATGT--GGACCA----TTCATTGCATAG--
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold622   279831 49 +   386604 CTCACTGCTCTGATGGCGTTTTGG--------TGGCTCTGTTAGGGTC-----TTCATTGGG-----
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  120977 46 -   130595 CTCACGGCTTTGTT-GTTTATTAG---------GACGATCT--TGCTTA----TTCATCGAA-----
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e cb4.chrX              9951476 279 + 21540570 I

a score=4810.000000
s ce10.chrX             4615432 34 + 17718866 TAGCTATACGATGAGTAAACAGATGAGGAAGA---AG
s cb4.chrX              9951755 28 + 21540570 --------TAG-GAATACATTGAGGATGACGAATTAG
i cb4.chrX              I 279 C 0
s caeRem4.Crem_Contig0  1547490 34 -  4500979 TTGTTAAATGGCGAATATATtgaagaagacga---gg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279880 34 +   386604 TAGTCGTAAGAAGAATAAACtgacgaagaaga---tg
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  121023 34 -   130595 ATGTTGTACGTTTGGTACGTCGATGAAGAGGA---AG
i caeJap4.Scaffold17739 C 0 I 279
e caePb3.Scfld02_0      2875780 1324 +  4147112 I

a score=2890.000000
s ce10.chrX             4615466 51 + 17718866 ACGATGAGCCA----CCGTTTCCTGAAACTGAAAAAGTTTTAAT-TTTTAGAATAC
s cb4.chrX              9951783 46 + 21540570 ACAATGGTCCA----CCGTTCACTGA-----AAGAAATTGTGAT-TTTAGAAATGC
i cb4.chrX              C 0 I 520
s caeRem4.Crem_Contig0  1547524 42 -  4500979 aagaTGATCC-----CGGTT---Ggg-----ctgaaattataat-ttttcgtAGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279914 51 +   386604 aagatgaaccAGCTGCAGTTCCTAGA-----AAGCAATTTTTATATCTTGAGATAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e caeJap4.Scaffold17739  121057 279 -   130595 I

a score=-2932.000000
s ce10.chrX             4615517  94 + 17718866 -------------------AGAGCATGCTAGAGTATGTCTAGGTTCTTATCTAAATCAGTCAAAATGCCAGAAAA----------------AATTGTTCTCA--------------------------------TTCAGCTCACTCGTAAAATAAATGTGC
s caeRem4.Crem_Contig0  1547566 158 -  4500979 ATAGACACTCAGTTGGGAGAGTTAATGAGAGACTAAAATT-TGCGCTTATATGAACTTTACAAAGTGCAAGAAACGTCACCCTGGCTTgataa--gtttcaaaattagaaaagttgACAACAGAGCTGTTCGCCTTCCACCCGTGCGTAAAATGAATGTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   279965  55 +   386604 ---------------------------------------------------TGAA----ACGGAggtcaacaaaa----------------aa--gttctaa---------------------------------TCCACTCGTGCGTAGAGTGAATGTGT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e caeJap4.Scaffold17739  121057 279 -   130595 I
e cb4.chrX              9951829 520 + 21540570 I

a score=-3476.000000
s ce10.chrX             4615611 156 + 17718866 GAACTCGCAGCTGCCTTCTTACACT-ATAAATTAAAACACGCGCCGCTCGCCTGAC----------------------AACACTCTTGGTT----------CAATATAGTTCTGCGCAAGTGTTATTGACTATCACTTCT--CATCTGGTCGCCGTC---TGCCCATTT--CTAGT------------------------------------AAACAACTGCCGAGCACTAA----
s caeRem4.Crem_Contig0  1547724 208 -  4500979 GAACTCGCAGCTGTCTTGTTACACT-ATGAATTAAAACAAACGCGtctgttttttc--------------cttttcttaaCCCCTTCGTTTGCCTTCTGAACGAT-CGTTTGTGCGCAAGTGTTATTGACTATCAGCTCACTCATCTGAGC----TC-GCTCTTCAATT--GTAGTCGTAGTTGAATAGTCATTCCGACAGACA-GCGACAACAACAAATACAAAGTCCCCA----
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622   280020 205 +   386604 GAACTCGCAGCTGACTTTTTACACT-AGAAATTAAAACAAGCGTCTCTACTCTTGCTACACACTCGTCATCTGTCCCTATATcccccttctctctttt---caat-ggTTTCCGCGCAAGTCTTAGTGACCAGAAGGGTAA-CATCTGGGAGATGTC-GTGCCTCGCTTTAGTAGTCGT----------------CGAC---CA-GCACGAAAAACAACTGGCCGGctctct----
i caeSp111.Scaffold622  C 0 I 9
s caeJap4.Scaffold17739  121336 192 -   130595 GAGCTCACAGCTGTTTTCTTACACTAATAAATTAA---ACGCGTCCCCGTCCCCAAGGCTCATTG-----CTTTTCATAGATCGTC---------------TGAT-CATTT-TGcgcgaagaagaagaagaagaagaagaagcaatTGGCCAACATCTGCCACGCACCCTTCTGCT-------------------CAATGCGCATATAATATATACGGCCATCATCCCCCCACCGC
i caeJap4.Scaffold17739 I 279 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e cb4.chrX              9951829 520 + 21540570 I

a score=11582.000000
s ce10.chrX             4615767 318 + 17718866 -TTCCATTTCA--------------ACGTACCGTCTGAATACCCGTATCCATTCGTGGTGGTGTTGTTATTCACAACACCGTTATGATGCTGTTGTGATGGTGGTCgctgctgctgctg---ctgctgttgctgATATCCAGTCAAAGGAGGAAGCAAGTTAGCAACAGATGGAAGTGGTTGATG---TGTGCT------TTGATGT---GATGGTTGATGGAATTCAGTTTGTCCCTGATGAGCTGAAGTCATTGAGATCATTTGGTGCTCCTGTTGAACGGTCCCCTGT----------GCTTTTTTCTTTGATGGA------GCTCTCGGTTTCTTCGCTGAAATAATTATA---TGTTTTTTT
s cb4.chrX              9952349 320 + 21540570 -TTCATTTACA--------------ACGTACCGTCTGAATATCTATAGCCATTC---ATAGCATTGTTATGAATCGGTCCACCACCATTCTGCTGCTGAGGCAGTTGTTGATGTTGTTGAGCCGGATGACTGTGAGGATTTGTAAGTGGAGGCAGAAGATTAGTGACGGAAGGTAATGGCTGGTACTTAGCAGGAGCGACCGGTGGC---AATGGCTGATACATGACCATG---TCAGGGTAC---------ACTGGTTCCATCTG-------CATCGCTTGCTCTTCTGGTGGCACAACCGCTTGCTTCTTTTTCGGCACT---GCCTTCTTTCTCTTTGCTGCAA-AACGACC---TAATTTGTT
i cb4.chrX              I 520 C 0
s caeRem4.Crem_Contig0  1547939 329 -  4500979 -ttcatttcaa--------------acgtACCATCGGTAAATCCATAGCCACCC---ATCATATTGTCATGCATAGCTCCATTTTGCTTTTGTTGTTGTGGTAGTGGTGGCGGCGGCGG---CTGCTGGTTATGGTTGTTGTTCAGCGAAGGTAGCAAATTAGCGATGGATGGCAGCGGCTGATA---AGCAGG------TTGCTGA---ATCGGTGGTTGGAAAACCGCGTGCTCtggatactgtagatttgCAGGGACCATATGATG-TTCCACTACTCCTGCTGCTGCTTCCGCTGCCAGTTTCTTCTTTGATGGCTTTGGCGCTTTCTGCTTCTTTGCTGAAA-ACGTAAA---GAACATACT
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622   280234 307 +   386604 -ctcactcAAATCTGTTTTGTATTGACTTACCATCTGAATATCGATACCCATTC---ATTGCATTGTTGTTCATAACACCATAACCTGATTGTTGTTGAGG---------------------TGCATTCTTCTTAAAACTGCTAATAGGTGGTAACAGATTAGCCACCGATGGAAGAGCTTGAGG---AGCGGG------TTGCTGA---ACAGGCTGTTGGAAAACCATTTGCTGATGAGTTCGTGGAGTGATTTCAATCAACTC-TG-GCTCATCA-TCATccttttgc-------------ttcttctttggTGGC------gccctctttctttttgctgaaa-aacaataatttcatACACT
i caeSp111.Scaffold622  I 9 C 0
s caeJap4.Scaffold17739  121528 268 -   130595 TTCCGTTCTCC--------------ACTTACTATCTGTGTATGGAAAGCAGCTT--GGTATCATTGTT----------TCATT---------------------------------------CTGTTGTTTTTGATATCCACTGATTGGGGGCAAAAGATTGGCAATTGATGGCAAGCACTGCTG---GCTTGG------TTGCTGATACATTGATTGTTGCTGATGGATCTGTTGCTGCTGCTGAAGATCCATTGCG------------TCTTGGTGCTCAGtttctttt----gaagcctgcttcttttttggagga------gctcgtttctttttggctgaaattttttta---tgatttttt
i caeJap4.Scaffold17739 C 0 I 160
e caePb3.Scfld02_0      2875780 1324 +  4147112 I

a score=-22912.000000
s ce10.chrX             4616085 121 + 17718866 TTGAATA--------------------AGA------------------------------------------------------------------GCTGGCAGGAGCCCC---------------------------------GGGTAAAAGAGC-------ATATGTGACGGAGAACAAAGTCGTAAAATAAAAAAGCTCTTCCCCCCGTTAA--------------TATGCTGCCCATAATG----------------------------------------------CAAAATCAAATATGTT----------------------
s cb4.chrX              9952669 175 + 21540570 GAGATTG--------------------AAA-------------------------------------------------------AGATTCCGAAAATGAGCTCGGGCTCCAGTAAAATGAAAAGGAATGGCACCGATTTGGATGGATAATGATGCCTT----ata---aaagaggaaaaaagtcATAAAACTAGGCA-------------------------------TGCACGACCGATTATGTCATG-----------------------------------------TATAGTCATAAATGTCCGACTATTCCTAAATTGAACca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1548268 243 -  4500979 AAGAGTA--------------------AAATAGAGCACAGAAAGATGTTGAATGGCTGTACGAACGGAAATGTCACTGCTTTGTCGGATTATGGATAATAGCGCGCTCTCC-------------------GTACCAATCCCGA-GGATAAACGAGCCCTGCGAGTA---GAAGCGGAGGAGAGTCGTAAAACAAAATG---CTTTTGTCGATTCATATTTCCATAATGTTACTCAGCCATTCATTTCATGATGATTT--------------------------------ACCGTAGCCTTAAACGAGTGG--AGTCCC---TTGA---A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   280541 214 +   386604 ACGAATGCTTATGGCAAACGACTAGGCAAA----------------------------------CGGAAATGTCAGTTTTTTGCTGGATTATAGAAAATTGTAGGCAACCC---------------------CCCGGGATAAACGGAAAACG-----------ATG---GAAGGAGGAAAAGGTCGTAAAACAAAAAG----------CTATTCA--------------TATGTGGTATATAATGTTATACTGGGTTCAACGTACAAAATCGACTCCCCCGGATATACAATTATATTCAGAAATATA----------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2875780 1324 +  4147112 I
e caeJap4.Scaffold17739  121796 160 -   130595 I

a score=27454.000000
s ce10.chrX             4616206  89 + 17718866 CTCACGTTTTTCAACACTCGAGACATTCCCTCCTGCAGCTTCGATTTCAGCCTTTGTCGGCTTCTTTCGCTTTGGTGCTGCTTTCTT---------------------------------------------------------GG
s cb4.chrX              9952844  86 + 21540570 cttacttttttcttcagtcGACAA---CCCTTCTGCAGCGCTAAGCTCCGCTTTCGTTGGCCTCTTGCGCTTTGGTGCTGTTTTCTT---------------------------------------------------------CG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1548511 143 -  4500979 CTTACGTTTTTCTTCCGCTGGGAT---CATTCCGGCTGCTTCACGCTCTGCTTTCGTTGGTCTTTTTCGTTTTGGCGGCGGCTTCTTTTCAGGCACTGAAGCGGGTTCAGGCACAGTGGGAACTTCTGGAATTATTTCTTATTACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   280755  86 +   386604 CTAACGTTTCTCTGCGTTCGGATC---TCCTCCAGCTGCTTCAGTCTCGGCTTTTGTTGGTTTCTTTCGCTTTGGCGCTGGCTTCTT---------------------------------------------------------CT
i caeSp111.Scaffold622  C 0 I 160
s caePb3.Scfld02_0      2877104  86 +  4147112 CTCACGTTTTTCTGTGTTTGGATC---TCCTCCTGCAGCTTCTATTTCTGCTTTCGTTGGCTTTCTCCTGCTCGTTGTTGGCTTCTT---------------------------------------------------------CT
i caePb3.Scfld02_0      I 1324 C 0
e caeJap4.Scaffold17739  121796 160 -   130595 I

a score=1854.000000
s ce10.chrX             4616295 5 + 17718866 GCGGC
s cb4.chrX              9952930 5 + 21540570 GTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1548654 5 -  4500979 ATGAT
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold622   281001 5 +   386604 GTGGC
i caeSp111.Scaffold622  I 160 C 0
s caePb3.Scfld02_0      2877190 5 +  4147112 GAGGC
i caePb3.Scfld02_0      C 0 I 485
e caeJap4.Scaffold17739  121796 160 -   130595 I

a score=592.000000
s ce10.chrX             4616300 11 + 17718866 AACGGTGGGGC
s cb4.chrX              9952935 11 + 21540570 TCGAGTGGAGC
i cb4.chrX              C 0 I 1166
s caeRem4.Crem_Contig0  1548682 11 -  4500979 CTGAGCGGAAA
i caeRem4.Crem_Contig0  I 23 I 35
s caeSp111.Scaffold622   281006 11 +   386604 GGAAGAGGAGC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2877195 485 +  4147112 I
e caeJap4.Scaffold17739  121796 160 -   130595 I

a score=-6181.000000
s ce10.chrX             4616311  39 + 17718866 ----------------------------------------------------------------------------------------------------------------------------CGGATCTTGCATAAAAGTCTGACCACTTGTTGACGCTGA---
s caeRem4.Crem_Contig0  1548728 162 -  4500979 CGGCTCAACACACATTC---TTTTCTGATCAATAACTA-TATAGAAAGCTAGACGACTATACTAGGCGGTGATATCTTATAAATAGAACGCGCCCTTCAAAAACCTGGCTTCGAAAACAATTAGCTTACCTCCTATGAGATTCTGTCCGACTGTTGTTGGCGCCAT
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold622   281017 112 +   386604 CAGCTGTATGAATACTAAAGTTATCAGACTAACAAATATTACAGCTGGCGAGAC-----------------------------TGGCAC--------CAAAAACAA--------------TTAGCTTACCTCCCCCAAGGCTCTGCCCAACTGTTGACGCCGA---
i caeSp111.Scaffold622  C 0 I 60
e caePb3.Scfld02_0      2877195 485 +  4147112 I
e caeJap4.Scaffold17739  121796 160 -   130595 I
e cb4.chrX              9952946 1166 + 21540570 I

a score=753.000000
s ce10.chrX             4616350 2 + 17718866 CT
s caeRem4.Crem_Contig0  1548890 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281189 2 +   386604 CT
i caeSp111.Scaffold622  I 60 C 0
s caePb3.Scfld02_0      2877680 2 +  4147112 CT
i caePb3.Scfld02_0      I 485 C 0
e caeJap4.Scaffold17739  121796 160 -   130595 I
e cb4.chrX              9952946 1166 + 21540570 I

a score=3121.000000
s ce10.chrX             4616352 54 + 17718866 CCGGTGCGATT------------------------------CCATTCATCCCGTCCATTTTCTCGTATAAAGCTGTAAC--AA---TAT
s cb4.chrX              9954112 54 + 21540570 CCGATGCGTT------------------------------TCCATTTGTCATGTCCATTCCCTCGTATAAAGCTGGAAT--TTGGT---
i cb4.chrX              I 1166 I 28
s caeRem4.Crem_Contig0  1548892 72 -  4500979 CCGGTGTTTTT---------TGCGCGAATTCTGGTTGTACTCCGTTGAAAGGTTCCATCTTTTCGTATAATGCTGAACA--AC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281191 83 +   386604 CCATTCCGACTCCTGCTGTTGACGCCGACTCTATACCGATACCATTAAAGCCGTCCATTTTCTCGTATAATGCTGGAATTGAT------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2877682 51 +  4147112 CCGTTCCATTT------------------------------CCATTTACAGCGTCCATTGTGTTTGATAATGCTGAAAC--AC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  121796 160 -   130595 I

a score=-2170.000000
s ce10.chrX             4616406 28 + 17718866 -CAAATTAATTGCGAGC--TCAAGTTACAGC
s caeRem4.Crem_Contig0  1548964 18 -  4500979 CAAAGT-------------TGAGGTCTTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281274 17 +   386604 -CATAT-------------GAAGATTGTAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2877733 30 +  4147112 -CATATAGTACACCAGCACGAAGGTTTTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  121796 160 -   130595 I
e cb4.chrX              9954166 28 + 21540570 I

a score=-418.000000
s ce10.chrX             4616434 4 + 17718866 -AATC
s caeRem4.Crem_Contig0  1548982 4 -  4500979 -AACT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622   281291 4 +   386604 -GACT
i caeSp111.Scaffold622  C 0 I 7
s caeJap4.Scaffold17739  121956 4 -   130595 AAAC-
i caeJap4.Scaffold17739 I 160 C 0
e caePb3.Scfld02_0      2877763 0 +  4147112 C
e cb4.chrX              9954166 28 + 21540570 I

a score=74761.000000
s ce10.chrX             4616438 157 + 17718866 AACTCACCTTTTTGAACACGTAATTGTCCTGCGACTGCTCCTAAGGGTACTTCTTGAAGTGCTTGTCCTAGGGGCATATCAAGTCGGATAAAATTCCGAAGTGATGATTGCCCTGTTCCCGGATGCAATTCCGGAGATGGTTTTTGTACTGAAATGA
s cb4.chrX              9954194 157 + 21540570 AACTCACATTTCTGAACCTGTAGTTGTTCAACAATGGCTCCTGCCGGTTTTTCCTGGATTGCTTGTCCAAGGGGCATATCAAGTCGGATGATACTCCGATTTGATTCTGTCCCCTTCACCGGATATGAGTCCGTATGAAGTTTGTCTACTGAAAATA
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0  1548997 157 -  4500979 AACTCACCTTTCTGAACTCGTAATTGTCCGGCGACTGCTCCTAAGGGTACTTGGTGTATTGCTTGTCCTAGGGACATATCAAGTCGGATGATACCCCGAATTGACGGTGACCCCTTTACCGGATTGTAATCCGTTGGGGggttttttactgaaaaca
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622   281302 154 +   386604 GGGATACCTTTCTGAACTCGTAATTGTCCCGCTACTGCTCCTAAGGGTACTTCTTGCAGCGCTTGGCCTAAGGGCATATCAAGTCGGATGAATCTCCGAATTGA---TGGCCCCACTCCCGGAACGTATTCCGCTGGGCTGCTTTTTACTGAAAACA
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2877763 152 +  4147112 --TCTACCTTTTCGTACTTTTAATTGACCCGCAACTTCTCCTAATGGTACTTCCAATAGAGCTTGGCCTAAGGGCATATCAAGTCGGATCCAGTTCCGAAGTGA---TTCCCCAGCTCTTGGAAGGTATCCCGTAGATGagaaattaactgaaaaag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  121960 151 -   130595 AACT---CCTTCTGCGTCTGAAGGTGTCCAGCAATTGCTCCTAAGGGTACCTGTGCCATCGCTTCACCGAGAGGCATGTCTAAACAGACAGCCGCCAAGTATGA---ATCGTTTGCTCCCGTTAGTGGCTCCGTTGTTGAATACTGGGCTGAAAGGA
i caeJap4.Scaffold17739 C 0 I 1623

a score=-40811.000000
s ce10.chrX             4616595 185 + 17718866 TCAATTTTTATTTATTTTGGTCACTAAAAAAAGAAAAGGCGAAAA--AAGTAT-TCCC--------------AACATAACTAGAA------------------AAGCG-ACAATTTCATGCTTTGGT--------------------AAAATTAAATAATATG----ACAAGAAAGAC-------------------------------ATGCACAAA-----------------------ATT----CAAATGGAAAAA-TTGCGCGGGAAAATGGGG--TACTCGAAAATCAATAACTGCCAAC
s cb4.chrX              9954351 195 + 21540570 GAAG---------ATATTG--------------AACGGTCATAGGCTAAGGAA-tcccggaa---------aaaaaatgaacgga------------------AAGCG-------TCATGCAAGGCTTCTATACTAATCGACTCT--TATCGCAGTTGAAATG----TCTAGAGCAACGGTTAATACAACT------------------ATTATTCAA-----------------------ATCTG--CCAACGAGCGCG--CGCGAGGCAAACCGGCG--ACACCAAAAATCGATAGGTGCCAAC
i cb4.chrX              C 0 I 97
s caeRem4.Crem_Contig0  1549154 238 -  4500979 agaa---------agtttAG------AATAAACAAGAATCGGGAGATAAGGAT-TCcc--------------aaaaacgagagaa------------------aagcAAG-AAGTTCATGCAAGGTTTCCATACTACTATACGAC--AAAGGGAAGAAAAGct----gattgaaaattctttGATGTGAATGG---------AGTGTGAATTGTTCTACGTGATAACCTTCATCACACTTCCTCTGCCCCAACGACCCCTACTACTGAGAAAGCGAACG----ctcgaaaatcgataaatgcCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281456 251 +   386604 GAAC---------CATTTAGTTAGCGGAATCGAAAGAACTGAATG--AAAGAAGccgggaaaaaaattgtgaaagaAAGCAAATATTGCGTGCAAGTTCACTCAACCATACAAAGG-AAACATATGTAGAAGGTGAATAgattgttgaaaaacaagtaaaACT----AAAAGCCAATCGGTCGTC---AGTAGCCA--CGTCaacat-------tcaa-----------------------att----caaatgagaCGGTTTGCGCGGGAATGGTACGCACACCCGAAAATCGATAAATGCCAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2877915 225 +  4147112 aaa-----------gttttgtgaaacaaaaaacaaaagtagggta--aaagac-ccaggaaaataa-----aaagaaagcaaacg------------------aaacgtgcaagttcacccaaccgtagaaaaggaa----------agaaaaagaaaaagctattcaaaaacaaaacgattgTTCTAGATTGCTACTCTCCGACATG-ACGTGTCAA-----------------------ATT----CAAATGAGGTGG-CAGTGCGCGAACGGTCCA-----CCTAAAATCGATAAATGATGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  122111 1623 -   130595 I

a score=-14592.000000
s ce10.chrX             4616780 76 + 17718866 ACGAAAACCATTCTT----CTCTCGTTTC----GAACACTCTCTGCGTCTCTATGGTCCAGT-------AAAACTCTCTACTAT--AAAGACA--------------------
s caeRem4.Crem_Contig0  1549392 82 -  4500979 ----GAGGGATTTTATTGCCTGTTCTCTCCAAAAATCgattctatcttcttt----tcctaTTTGGGTGTATCAGTCCT-CTAG--CAAGTAA--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281707 86 +   386604 ----GA-----TTTTATGCCACTCGTCGC----AATAGATTACA--ATCGCT----TCTAATTT-----TAAACGCTTC-CTAC--CAAttggttcagaaaaatctcatGATG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2878140 84 +  4147112 ----AGACCATTCCCTTGCCTACCATTCC----AATCATTTGAA-CATTGC------CCTGTTT-----CATACTCTCT-CAGCGACAGTGAATTTAataa--------gaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  122111 1623 -   130595 I
e cb4.chrX              9954546 97 + 21540570 I

a score=2201.000000
s ce10.chrX             4616856 255 + 17718866 CTATAAAAGAAGGCAACTAAAAAAAGGAGAAGGCAAAAAAA-----------AACCGA---CGAACAC---------AGGAACGGGGCAGAAATAAACTTGAGGCAAC----AATTCA----------GCAAGA-----GGTCGCACACGCGACGCACCACGCAACGCCTCACATT----GATGGAGAAAGTGGAGAGG-GGTGTGTGTGTGCAGCCA----CAGCAACCGCAACGGGACCCTCACAATTTC---GCGCGGG---CCGCGTACGCAAACCG--CGTCGCGCCCC-ATATATCATATACAGAGCAG
s cb4.chrX              9954643 278 + 21540570 ---caacgaaaaattggaacaaaaaag------cgaaaaagagaaatcatgaaagaga----gagcgttcggagaaagTGAACGCGT-CTAATTTGAACAG--GCACCCTCGAGTCGTCGCGAGGGGGGAAGGA-----GGCCG--ACCGCGACGCAGAACGCAACGCA-CGC-------GGGGGAAAAGGAGGCGGGGCGTTGTgggggggAGGACGGGGTTGCCCCCTCTCTATGGTCCCCTC--TTCAAATCGCGCGGGGAGACGCA-ACGC-GACCG--CATCGCACTACGATTTATCATATACAGAGCAG
i cb4.chrX              I 97 C 0
s caeRem4.Crem_Contig0  1549474 245 -  4500979 ---TCGTAAAAAGTGAGAACATgcatga-attttgaaaaag-----ttttttaggaGA----GAACGC---------GTGAACGGCG-AAAAATCGACTTG--GCAGC----AATTCT--------------GA-----GGTCG--CACGCGACGCACGACGCTACGCA-CACA---ACGGGGGGAGAAGGGG-------GTTTTGGGAAAGAAGACG----CGTCCTCCGCAAGCGGACCCTTCGGGTCGTAT-GCGCAAGAGACCGCGTCCGC-GACCG--CAACGCGCCCTGATACGTCAT-TGCTGAGCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   281793 260 +   386604 --CTTAGAGAAAAcataaacaaaaatga-tggaagagaaaa-----------gagagatgatGAACAC---------GGGAACAC-G-AAAAATCGACGGG-----------AATCCagcaagagagagagaga-----gaccg--cACGCGACGCACCACGCAACGCA-CACACT-GACgggggagaagaggggggag-ggagagggTACGTCCACA-G--CAACCGCAAGCAAGGACCCATTTGAATTGCGA-GCGCGGCAAACCGCGTGCGC-GACCG--CATCGCAGTC--CTATATCCTACAAGGGGCTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2878224 259 +  4147112 --gtgagaaaaagcacccggaaagat---------agaaaa-----------aagaga-aaagaacac---------gggaacacaa-aaaaatttgcggG-----------AATAAAATGAGAGATAGAAGGAAAGGGGACCG--CACGCAACACGCAACG---CGTC-CTCACTAAAAGGGggagaaaaggggaaaacGTGGAGGGTACGTATGCAGG--CAACCCCGCTAGGGGGCCCAATTGAATTGCCA-ACGCGGGAGTAGGCGTGCGC-AACCACCCAACCAGCTC--ATAAATCATACAGAGAGCAG
i caePb3.Scfld02_0      C 0 I 219
e caeJap4.Scaffold17739  122111 1623 -   130595 I

a score=-21742.000000
s ce10.chrX             4617111 198 + 17718866 ATTTGCATACAAGGGAGGCGA---------TCTGCCTAAAATCGATGGCCGTCT------GTTCTCATTAGCGTTCTCATTAGGCG-----------------------CGACTGGCAGAGTATGACATGC---TATGCGGTAAGGGAAT--------------AATTAGAAAACCTATCTATTCGGG--------------------TTTATATTCACTTGTTCCAACTATGATTAG--------------------------AAGCCCAGAAA---CTCAAAAATTTTTC----TTGAGAAAAA-
s cb4.chrX              9954921 186 + 21540570 ATTTACATAAAT-GCAGGCGA---------CGCGG--AAAATTGATACATAACCCTCCGTGGACTAATTGGGGGCTTATACTAAAGGGAAGA-----------------AGGCTGGTAGAGTATTATTAATATATATG--CGACGG------------------GGTTAAAAA----GAGGAATTGGG--------------------TTCTG---AGAATaccc--att----------------------------------tttgtaattaa---atcgggtaagtttt----tttaaagaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1549719 233 -  4500979 ATTTGCATAGAGAGAAGGCGAAG--GGTACCGAGGGTAGCACCGATGGCTGCACCGATGGTGACTAATTAGGGGTCTCATTAGGTAGGAAGAGATACTGTAACATTTGGAGGGTTGCAGAGTAATATGAAC---------------------------------GGCTTAAAA----GGCTATTCGTA--------------------TTCGAAATAATATGCTC--ATTAAAATCAG---------acatgaaagagaa----aatgtaaTGTACtcattagatcatttttaaagtttaaagaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   282053 265 +   386604 -AGCGCGGAGAGAGAAGACGGTGTAGCCGGCGTGCGTAGTATCAACGTCTACAT--------GCTCATTAGCGGGGTTGATATATGAGCTGGTCT--------------GGAAAGGTAAGGTATTATGAATCCTTATGAATGAAGGTTCTGTGCTTAATTATATGATACAAAC----AGCGAATAGGAAGAAAATATGCACGATGCTTTTCTC-ATAACATGCTT--TCTCGAATCAGGGAATAGAAGCATGCACAATAACATTAATGTTATATa-------gttgagtttt----ttgaaaaaga-
i caeSp111.Scaffold622  C 0 I 1
e caePb3.Scfld02_0      2878483 219 +  4147112 I
e caeJap4.Scaffold17739  122111 1623 -   130595 I

a score=-94409.000000
s ce10.chrX             4617309 367 + 17718866  
s cb4.chrX              9955107 374 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1549952 479 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   282319 459 +   386604  
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2878702 520 +  4147112  
i caePb3.Scfld02_0      I 219 C 0
e caeJap4.Scaffold17739  122111 1623 -   130595 I

a score=45640.000000
s ce10.chrX             4617676 133 + 17718866 GTTTAGCCGAATT---------------CTTAGCACGAGATTTCCGTTTCAGTTT------------CGGTTCCATAGCTTTCTTCCTCAATGCTTCCTGCTCTGCGGCTCTGGCCAATGCCAATGGTTCTCTCAAAAACGCGATGAGGTCTTCATCCGT
s cb4.chrX              9955481 158 + 21540570 TGGGGACAATCTTAGAAGTGCGGTTCGGCCTTAAACGCGGTTTTCGTTTGGGCTTCGACTTAGCTGGCGgatcagtcaatttttttctcaacgcTTCCTCCTCTTGTTTTTTGGCAAGCGCCAAAGGCACTCGAAGAAATGCGATTAGATCTTCGTCA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550431 139 -  4500979 GATCAACAACTTT---------------CTTGGGACGAGAtttccgttttggttt---tttcggtttcggttccgtgtttttctttttacgtGCTGCCTCTTCGGCCGCCTTAGCCAATGCCAATGGTTCTCTTAAAAATGCAATGAGATCCTCGTC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   282778 133 +   386604 GTCGGGCAGCTGT---------------CTTGGCGAGAGTCTTCCGTTTTGGCTT------------CGACTCGGTCGCCTTCTCTTTCAACGCCGCCAACTCAGCCGCCTTCGCCATTGCAAGTGGTCCTTTAAGAAAAGCGATGAGATCTTCATGAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879222 133 +  4147112 GTCTGACAGTTGT---------------CTTGGCGCGAggttttcgtttattttt------------cgCCTCCATCAACTTCTTTTCTAACGCTGCCTGCTCTGCTGCTCTGGCCAAAGCTAAAGGTTTCCGCAGAAATGCGAGAAGGTCTTCCTCAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  123734 133 -   130595 GTGCAGCTGATGA---------------TTTAATTCGAGGTTTCCGTTTCGGCAA------------TGGGTCGAGAAGCTTCCTTTGCGCTGCCTGACGCTCTTCCTCTCTAGCCTTCTCTAATGGTTTTCTGAGGAATTCGATGAGCTCAGCGTCCGT
i caeJap4.Scaffold17739 I 1623 I 689

a score=-1262.000000
s ce10.chrX             4617809 19 + 17718866 TGCTTCAGA--TGCCGGTGTG
s cb4.chrX              9955639 15 + 21540570 AGTTTCGGC------GGAGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550570 19 -  4500979 --TTTGCGCACGATTGGAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   282911 19 +   386604 AAAATCACT--TGATGGAGTA
i caeSp111.Scaffold622  C 0 I 75
s caePb3.Scfld02_0      2879355 19 +  4147112 AGGTTCCTC--GGTTGGATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=3813.000000
s ce10.chrX             4617828 11 + 17718866 CTCATGCTTCT
s cb4.chrX              9955654 11 + 21540570 CTCTTACTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550589 11 -  4500979 CTTTTACTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2879374 11 +  4147112 CTCTTACATCT
i caePb3.Scfld02_0      C 0 I 130
e caeJap4.Scaffold17739  123867 689 -   130595 I
e caeSp111.Scaffold622   282930 75 +   386604 I

a score=612.000000
s ce10.chrX             4617839 30 + 17718866 CTGTAGAGGCGATGGAACCGATTTGCGAGT
s cb4.chrX              9955665 21 + 21540570 TTGAACAGGTGACGATGGCGG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550600 30 -  4500979 TAGAACAGGTGACGTTTCCAATTTATGAGC
i caeRem4.Crem_Contig0  C 0 I 37
e caePb3.Scfld02_0      2879385 130 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I
e caeSp111.Scaffold622   282930 75 +   386604 I

a score=253.000000
s ce10.chrX             4617869 27 + 17718866 AGTTTCTGGATTGTTCAATTGTTGTGG
s cb4.chrX              9955686 20 + 21540570 -------AGATTGGTGACGCATTGGGG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2879385 130 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I
e caeSp111.Scaffold622   282930 75 +   386604 I
e caeRem4.Crem_Contig0  1550630 37 -  4500979 I

a score=94.000000
s ce10.chrX             4617896 13 + 17718866 ATTACTTGGTCCG
s cb4.chrX              9955706 10 + 21540570 GTGCC---GTCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   283005 13 +   386604 ATTTCTAaatctg
i caeSp111.Scaffold622  I 75 C 0
e caePb3.Scfld02_0      2879385 130 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I
e caeRem4.Crem_Contig0  1550630 37 -  4500979 I

a score=-5479.000000
s ce10.chrX             4617909 69 + 17718866 TGGCATTGCTCAATTTTCATCGATCCCTCAATACTGACG---ACAGCTTTGTTC---GCGGTTTCT----------------------GAAAAGA----------------CC
s cb4.chrX              9955716 91 + 21540570 --------------TTGTACAGGTCCTTCGAC---GACG---ACGACTGCCATCTGGTCGGGGTCATTTTTCTGCGGACCATCGAGACGAGGGGAGGCACCTGCTGTAGTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550667 70 -  4500979 TGCCGGGGCTCAATTTTCATAGGTCGGTCGACGTTGAAA---ACAACTGCTCTCTGCACAGTCCCA----------------------GGGGGGA------------------
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold622   283018 53 +   386604 -------tttcaattttgataGGACGACCGACGTTGATGTGAGCAACTGCCGTT----------------------------------GAGGAT-------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2879385 130 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=6905.000000
s ce10.chrX             4617978 43 + 17718866 ACTGGAGGA---CCCACGTCATTATGGACA---GGTGTGGCAGGTGTCG
s cb4.chrX              9955807 49 + 21540570 GTTTGTAGTGTGGAAAGGTCTTCGATGGCAGGGAGAGTGACAGGTGTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550737 42 -  4500979 -TTGGAAGT---GACACGTCATTAATGACA---AGTGCGGCAGGTGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283071 43 +   386604 TTAGGAGCT---GACGTGTTGCTAATGACA---CATAAAGCAGGTGTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879515 43 +  4147112 ACAGAAGGT---GACGTTGCATTAATTAGA---AGAGAGGCAGGTGTCG
i caePb3.Scfld02_0      I 130 I 20
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=-4859.000000
s ce10.chrX             4618021 32 + 17718866 ACA------CTCTGTTCACTGCAGCCAGCACTAATGCA
s cb4.chrX              9955856 26 + 21540570 ---------CGTTGTTATTGGTAGATGACTCCGAC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1550779 23 -  4500979 ---------CGATGTTGTTCAGAGAAGATCC---C---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283114 29 +   386604 ACACTTTGCCCATATCCACAACTGTTGAC---------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2879558 20 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=4532.000000
s ce10.chrX             4618053 9 + 17718866 GGATTAACA
s cb4.chrX              9955882 9 + 21540570 GGATTAGCA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0  1550802 9 -  4500979 AGATTAACC
i caeRem4.Crem_Contig0  C 0 I 142
s caeSp111.Scaffold622   283143 9 +   386604 GGATTAGCA
i caeSp111.Scaffold622  C 0 I 128
s caePb3.Scfld02_0      2879578 8 +  4147112 GGATTAGC-
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=0.000000
s ce10.chrX             4618062 7 + 17718866 ACGCATT
e caePb3.Scfld02_0      2879586 0 +  4147112 C
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9955891 12 + 21540570 I
e caeSp111.Scaffold622   283152 128 +   386604 I
e caeRem4.Crem_Contig0  1550811 142 -  4500979 I

a score=-9156.000000
s ce10.chrX             4618069 118 + 17718866 CTTCGAAACTGTTTCTCGTTTTTTGTGT------------TGTGCAAGATGCATCTTCCCGGTTTAAAACAGATGGTGTTGAGTCTTCAGGATTAGGAGCACTATC----------------TTTTTCTAAGAAGAAACTAGAAAT------------------
s cb4.chrX              9955903  71 + 21540570 --------------ATAAGAACGTGTTTAGATTGACCTA-TGTGAGAAGT------------------AAAAACGTAATT------------------------------------------GTTTGCCAAATGGCTGTTGGAAGT------------------
i cb4.chrX              I 12 I 35
s caePb3.Scfld02_0      2879586 135 +  4147112 -------ACCCTCTCTCATCTTATGTGCGTCTTGATCCGTTGGGAAAGAT------------------AATGATCCATTTGGGGCAGCAG----ATGGTCCCGACCCTTCTTCTCTCTGTACGTTCGTCAAAACAGGATTTGCAGGGGACCGACCTTCTCTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I
e caeSp111.Scaffold622   283152 128 +   386604 I
e caeRem4.Crem_Contig0  1550811 142 -  4500979 I

a score=0.000000
s ce10.chrX             4618187 20 + 17718866 CCCTGTTGCATTATGTTCAT
e caePb3.Scfld02_0      2879721  0 +  4147112 C
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9955974 35 + 21540570 I
e caeSp111.Scaffold622   283152 128 +   386604 I
e caeRem4.Crem_Contig0  1550811 142 -  4500979 I

a score=2970.000000
s ce10.chrX             4618207 77 + 17718866 TGGTGTTATTTTCCAAAAAACGAGACATTCCAAA---GTGCCCTCTATCATTTTGAGCATCACAACAATTATTGTTATTT--
s cb4.chrX              9956009 78 + 21540570 AAGAGCttgtttccaaaaatcgagaCATCCCAAAAGTGTTTCTTCTGACATAC--GGTCTCATAACGGGCAGTTTTGGTT--
i cb4.chrX              I 35 I 337
s caeRem4.Crem_Contig0  1550953 75 -  4500979 ACGAACTAATGTCTAAGAATCGAGAAATTCCAAA---GTAGCTACGGTTATAA--GGTCTTTTAGGTGGCAAAACGGGTT--
i caeRem4.Crem_Contig0  I 142 I 1
s caeSp111.Scaffold622   283280 73 +   386604 -CGGTGTTTTCTCTAAGAATCTCGACATCCCAAA---GTGGCTTcgattatc-----ttttttctttggcaCCGCATGACTT
i caeSp111.Scaffold622  I 128 C 0
s caePb3.Scfld02_0      2879721 73 +  4147112 -TGGTGTAGACTCTATGAACCTGGATATTCCAAA---ATGACTTCTGTCGTt-----tgttttatcagtttttgtgtGATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I

a score=-2608.000000
s ce10.chrX             4618284 7 + 17718866 GAAGGAG---
s caeRem4.Crem_Contig0  1551029 7 -  4500979 ---GGAGGAT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   283353 1 +   386604 ---G------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879794 6 +  4147112 ---AAAGCG-
i caePb3.Scfld02_0      C 0 I 83
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9956087 337 + 21540570 I

a score=-2818.000000
s ce10.chrX             4618291 68 + 17718866 ----------ACTCAGAAGAAG-AATACTCGAGCCTAA-----------CTGTAG---AGTTTTGTACAAAAATC----GTTTGACGTG----GGAGACGA
s caeRem4.Crem_Contig0  1551036 85 -  4500979 TCCATAACAATTGCAGTAGCAGTAGCACTCG---TTGATCTGTTAATTGGTGTAG---------GAGCAaggattggtggtttcgcgtC----AGACATGG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   283354 79 +   386604 ----------GCTCAGAGATAGGAGC---------TAATGTTTTTATTGCTATAGCTGATTTTTGAGCA---ATTTCTGGTTTGGTGTTCAAGGGATAAGA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2879800 83 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9956087 337 + 21540570 I

a score=191.000000
s ce10.chrX             4618359 2 + 17718866 TG
s caeSp111.Scaffold622   283433 2 +   386604 TG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2879800 83 +  4147112 I
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9956087 337 + 21540570 I
e caeRem4.Crem_Contig0  1551121 6 -  4500979 I

a score=-232.000000
s ce10.chrX             4618361 17 + 17718866 CAACGGAA-CACTCGAGG
s caeSp111.Scaffold622   283435 18 +   386604 ACGTGGAAGCAGCAGAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879883 17 +  4147112 AAATGGAA-TATTGTCGT
i caePb3.Scfld02_0      I 83 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9956087 337 + 21540570 I
e caeRem4.Crem_Contig0  1551121  6 -  4500979 I

a score=-2679.000000
s ce10.chrX             4618378 51 + 17718866 TATGCAGTTTGTTGAGAAAAGGCTGGAGCTGTTTGTGCTCGGAATGCAACA
s caeRem4.Crem_Contig0  1551127 48 -  4500979 TCTTCAGTTGGTGAATGAAAGGTTTCAGTTGATGGTCCTCTGT---CAGGA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   283453 45 +   386604 TAGTGATTTCATCCAGAAAAGGCTGAAGTTGACTTTCCGCTTT------CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879900 43 +  4147112 TCCGCATTTTCTCTAACAATTGTGAAA----AATCTCCGTCAT----AGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  123867 689 -   130595 I
e cb4.chrX              9956087 337 + 21540570 I

a score=10467.000000
s ce10.chrX             4618429 152 + 17718866 -AATTGCCAATTTTCC---CGAAGTCTTGTTGTGTATAGTTTAAGTATGTGTAGAACATGGCTTGCGCTTCTTCTGCAGTCAAATTTGTAGGATCAAT----AAAACCCTGAACACGACGAGAACTTCGCTTTGGTT---GAGAA---------CATAAAGACTGAGTTCGA
s caeRem4.Crem_Contig0  1551175 167 -  4500979 -AAGTATGCACTTTCT---CCTTGTTTTGTTGAGTATAATTTAAATACGTGTAGAACATTGCTTGTGCTTCTTCGGAAGTCATGTTCGCCGGGTCAATAAACGTCTGTTGGACCTTTGCTAT-CCTTTTCCTTGTTCTACGAGTAGGCGGAGGAGGAACAGGGGGAGGAGTG
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold622   283498 146 +   386604 -gcttttgactttttttcatttgagcTTGTTGAGTGAAATTGAGATACGTGTAGAACATTGCTTGTGCTTCATCTGATGTTAAATTTGCAGGATCAAT----GTAAGCaagaga------------tttttttggtttccgCAGA---------CAAACAGATTGGGATCTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2879943 145 +  4147112 -GCGTTTGAGCTCTT----CCGGGTCATGaagagaaaagttcaaataagTGTAAAACAATGTTTGTGCTTCTTCTGGAGTCAGTTTCGAGAGATCGAT----CGTTTTCGGATC------------TTGTTTAATTCTTCGAGGAGTC------GATAGAGATTGAGATCGG
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold17739  124556 149 -   130595 AATAGTTCAGCTTTG----CAAATTCCGGTTGAGCAAAATTCAAGTAATTGAGAAACATTGTCTGAGCTTCTTTCGTGCTAATAGTCAATGGATCCACAA--AAGGCTCTGATT-----TGCAACTGCTTCTTTTTCTCGGC------------TGTTGAGATTGCGGCCTA
i caeJap4.Scaffold17739 I 689 C 0
e cb4.chrX              9956087 337 + 21540570 I

a score=-8557.000000
s ce10.chrX             4618581 59 + 17718866 TTTCGGTTTTGTTG------TATCCTCGCATTTGCATACTCTTCGTGATAAAGGCGCAGCGTGGT
s caeRem4.Crem_Contig0  1551361 58 -  4500979 --TCGCTTTCATTGC-----TAATTGTTTGGAAGCATACTCTTCATGATATTGCCGcagtgtctc
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold622   283644 43 +   386604 --------------------TAGCGGCCCGAAAACGATCGCGACATG-TATT-CTTCACTGTACA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  124705 62 -   130595 GCACGGATCGGCGGCGACCAAACGTTTCTTCTTGCGTCTTCTTCTGCAAAGAACTTTAACGC---
i caeJap4.Scaffold17739 C 0 C 0
e caePb3.Scfld02_0      2880088 44 +  4147112 I
e cb4.chrX              9956087 337 + 21540570 I

a score=1012.000000
s ce10.chrX             4618640 18 + 17718866 TTTTTCCTCAACCGTTCG
s cb4.chrX              9956424 18 + 21540570 TTTCTCTGCATCTGTCCG
i cb4.chrX              I 337 C 0
s caeRem4.Crem_Contig0  1551419 18 -  4500979 tttttcttgtggCGTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283687 14 +   386604 -TTTTCATAAAGTCT---
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17739  124767 18 -   130595 CTGTTCCTCCATTACTCG
i caeJap4.Scaffold17739 C 0 I 2
e caePb3.Scfld02_0      2880088 44 +  4147112 I

a score=51946.000000
s ce10.chrX             4618658 182 + 17718866 -ATCTTCCAACTTCTTCCATG---AAATTC--------TGGCAGCTGTTTCCATTCGTTCCACTTTTGAATCTCTCT---GACACAATGAAGCGAGCGCATCTCTTGTTGATTGATTGCTTGCAACAACGATGGATTGCCCGGTCTGATCATTCCAGACACAGACAGTGTCGTTCGACGCAAAGTGAGCACTTATCA
s cb4.chrX              9956442 182 + 21540570 -GTCTTCCTCCTTCttaaaag---ttattt--------ttccAAGATCATCCATCCGTTTCGCTTCCAAGTCTCTTA---AGCAAAGCGAAGCCAATGCATCTTTTGTTGATTGATTGCTCGACACAACCACTGATTGTCCCGTTCGATCATTCCAAACACAAACTGCATTGTTTTGTATCAATTGAGCATTGATTG
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig0  1551437 182 -  4500979 -ATCTTCAATCCGTTTATATG---ATATCT--------TGGTTGCTATCTCCATCCGCTCTGCTTCTGAATCTCTCA---TACTGAGAGAATTGAGTGCATCGCGTGTTGACTGATTGCTCGCCACAACAACTGATTGACCGGTTTGATCATTCCACACACACACTTTATCCTTCGAAGTGTAGTGAGCATTTATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283701 175 +   386604 --------ATCTCTTGCCTTG---CTCTAT--------CTTCGATAGTTTTTAATCCTATCTTATCGGTATCTTGCT---GGCAGAGGGATGCCAACGCGTCTCTAGTTGACTGATTACTAGCGACTACCACTGATTGACCTGTTTGATCATTCCAAACACAAACGGTGTTATTTGAAGTGACTTGGGTGCTGATAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880132 194 +  4147112 -ACTTTCCCGCTGCTGCCTTAAGCCTCTATCCGCATTCCTCCTACGATTCACCACTGTATGTCTTC--TTTCAGGTTCAAGACATAGTGATGCCAATGCATCTTTTGTGGTTTTCGCACTTGGAACAATAACTGATGCTCCTGTTTCTTCGTTCCATATTCGAACCATGTCTTCTGAAGCAAAGTTGGCGTTGAGTC
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold17739  124787 183 -   130595 GCATTTCGATTTCGTCCGTCG---CCATCC--------TTGAAACAATGTCCTTTTTCTCCGCTTCTGAATCCCTTT---GGACCAATGACGCCAGCGCGTCTCTAGTCGACTGATTACTAGCCACGACGACAGATTGTCCAGTTTGGTCGTTCAGAATAAGAACGGTATCGTTCGAAGCAATTTGCGTGGATACCA
i caeJap4.Scaffold17739 I 2 C 0

a score=2123.000000
s ce10.chrX             4618840 30 + 17718866 GTCCGGAT-CTTTTGATATCGCAACCTGAAA
s caeRem4.Crem_Contig0  1551619 30 -  4500979 -AACTGACACGTTTGTAATCAAAGTCTGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283876 30 +   386604 TGCCCGAT-CGTCTGACTTCACAGTCTGAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880326 30 +  4147112 CACCTTGT-CTTTGATTCTCATGGCCTACAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  124970 30 -   130595 GTCCTATT-CGCCGCGAGTCACAACCTGAAA
i caeJap4.Scaffold17739 C 0 I 1320
e cb4.chrX              9956624 78 + 21540570 I

a score=-9220.000000
s ce10.chrX             4618870 28 + 17718866 TT----AAATTTGATTTAAATTTGCTAAGTTG--------------
s caeRem4.Crem_Contig0  1551649 19 -  4500979 CTGTAAGGG---GAT-----------ATATTTG-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283906 27 +   386604 TT----AGT---GAT------------AATTaatgattttcttttg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880356 33 +  4147112 CTG---AAA---GATGTACACCTA--AGATTAGTGG-----GTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  125000 1320 -   130595 I
e cb4.chrX              9956624 78 + 21540570 I

a score=-65551.000000
s ce10.chrX             4618898 414 + 17718866  
s cb4.chrX              9956702 480 + 21540570  
i cb4.chrX              I 78 I 130
s caeRem4.Crem_Contig0  1551668 379 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   283933 360 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880389 385 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  125000 1320 -   130595 I

a score=-9162.000000
s ce10.chrX             4619312  95 + 17718866 GC------AGTCAATTGTAAAC------------ACGATGCAAAACTAAA-----------------------------------G--------AAGAGGGA--------AATATGTACAAATGTGTTAATTAGTC------AAAGGTCTGCTATCACA--ACGAATGCATC------------------------------------------
s caeRem4.Crem_Contig0  1552047 159 -  4500979 GC------GGTCAAATGTAAAC------------ACACGGCACAACGAAGACTCTCAAATGTTCTAAAACCGAAAAGACTAACTAG--------AGGAAGCATACACAATAAAATGAATGATTGGGTAACTAAACG-----AATCGATTTGCCAACACA--CCAATATTCTCATGGTTATCA----TCAGTTCATT------------------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold622   284293 175 +   386604 TCTTGTTGAGTCTATTGtaaacagaaaagaagaaagaaagcaAAGCAAAA-----CGGAT---------TCGAA---ACTACTTCT--------aggataga--------gaaaaaaatgattggattAATAAGCG------ATCGATTTGCCAAAACACGCCAATTTTCTCATGATTATCATCATTCGGTTCATTTACATTGGACATTTCACT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880774 159 +  4147112 CC------AATCGAATGTTAAC------------AGGGAGCAAAGTGAAG-----cg---------------------ctactttttttttcaaaggaatgAT-----GTAACAATACTGATTGTGTTAAGTAGTGTGTTATATCTTTCAGTCCACACTCCCAAAGATTCTCATGATT------GCTCAATTCATTTACATTTCATACATCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  125000 1320 -   130595 I
e cb4.chrX              9957182 130 + 21540570 I

a score=-32808.000000
s ce10.chrX             4619407  75 + 17718866 -------------------------------------------TTGAAGCTT------CCT-CCATGGATCCGTTGGTTGTGCGAA-CAAGATG-----TACATATACGG----------------AAATTAC----AACACGATTTAGAC
s cb4.chrX              9957312  74 + 21540570 CTGA----------------------------------TGTCTTGGTTGTTC------AAT-CGAA-----CGAAAATGGT--GGATCGAGAT------TTCGGGCgaaa----------------aaac-------aaacgaatgcaaaa
i cb4.chrX              I 130 C 0
s caeRem4.Crem_Contig0  1552218 126 -  4500979 TTCACTCTCC--CTTTTCTCTCA----CACATACCAACCATCCCGTTCGTTTCTGCCGCGT-CGA--------CAAATGATTCAGATTGAGATaatcccttttttcaaaa--------gctacATGAAACTATCA--GAAAGAACACACAG
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold622   284468 126 +   386604 ------CTCC--CTTTCGTCGTA----CGCACCACCATCCCGTTGTTCGTTT--------TGCGAAG---TCGACAACGATGTGGATcgagataattttttttctcc--gtcTGAGAACCTATTTCAAACTATCAGCCACACAACACATAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2880933 126 +  4147112 ------TTTCAACTTCTCTCGTATTCTCGtataaatagtttttttttggttt--------t-caacg---CTGTCAGTGATGTAAAGTGCGATAATCTATTCTTTTCAAGTTTAGGTTGCTTTTCAAGACTACTAGTTATGA-------GG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  125000 1320 -   130595 I

a score=47492.000000
s ce10.chrX             4619482 425 + 17718866  
s cb4.chrX              9957386 462 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1552344 486 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   284594 453 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2881059 482 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  126320 460 -   130595  
i caeJap4.Scaffold17739 I 1320 I 3387

a score=-64071.000000
s ce10.chrX             4619907 117 + 17718866 CCAAAGTTCAAAATT-------------------------------------------CGCGGAAAAAACT-----------------AATTCTC--------------AG--GGGGT----------TTGT-----------AAC----------GTACTATAAAGAAT----------------AAAAAAG-----------CTGAATAATTTTTTTTGGGAAAGTCACAATTTTCAGTTAAA--CGATAA--------------------------------------------
s cb4.chrX              9957848 154 + 21540570 ---GAATGAGAAA------------------------------------A--------TACCTGTAGAATTGATGG-----GAGTGAGAATTAAA-GACGAAGTTTGATAG--GGAAC----------agga-----------aat----------atttgaaacacATGTTACATGAACttttggagcaaaa--------------aaatG----TGATGTGG--------------TGCTGGG--Aaactgaactt--------ttcaaaa------tg---------caACCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1552830 197 -  4500979 atcgaatgaaaaattaaga----------gGGACGTCAT--------ATG--------TACtgcgaaaattggaaaatattgattgtGCGTCAAGTGTCGGCACTAGAAAGACGGACC----------AGAT-----------AACAAATCAAGGGAGTCGAAAAACAAG-TGCGTGA--Caatggagaaaaa-----------ttgaaaaa----tggtatgaaaat---atttcgttgtgaga--taacaaaaaat--------tttgaaa----------------------aa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   285047 238 +   386604 --AGAATGTTGAAAGTGAA----------TGAATGCAACAGCTGAGGATGAGggaaaaaacggagaagata--------ttttttttgaactatg------------------GAAcctaaattgaaaaagtgttaGTGCGCCAAA----------TGTCGCTGGGAAAG---CACAAACGAAT-GGGAAAACGGACCTGatgacagagaga----gagagtgaaaTTTG-GTTGAAAAGTGCGG--CGacaagaatgaaaaatcgtTTGGGGGAATCATGATTCCACCATAGATAA
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0      2881541 184 +  4147112 tgagatcggtgaaatcggATAAAGCGGTGTGAAGGTCATTGCGGCGGATG--------TACAGAGGAAATC-----------------AATCTTG------------------GGACC----------AAGT-----------AAT----------TTTCTATggcaa-----------------gaaaaaac-----------ttgagatA----CAAAGCAAACATCA-GTTGTCTAGATAGGTATGACGAAATTTGAACGTCCTGTGGGT------TGGTTTTTTAGAAGATAA
i caePb3.Scfld02_0      C 0 I 64
e caeJap4.Scaffold17739  126780 3387 -   130595 I

a score=-9172.000000
s ce10.chrX             4620024 43 + 17718866 C--AATAATTTTTCTCAAAGAAAACACTCGAGCCCACACCACTCA-----------------------
s cb4.chrX              9958002 58 + 21540570 ---AACTCATTTTCCCTATTCACCAGCTCACATCAGTTTTCTTCACAC-------CAATATTATTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1553027 63 -  4500979 ---aggagattctCCGCAAG-AAAAGTGCAAGGAAGTTCTTTTTTGCCGTAGATTCAAAACTATT-CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   285296 60 +   386604 TAGATAACTGTGtttggaag-aaaagtttGGAAAAGTTCCTTTTTGACACCACACCAATAA-------
i caeSp111.Scaffold622  I 11 I 10
e caePb3.Scfld02_0      2881725 64 +  4147112 I
e caeJap4.Scaffold17739  126780 3387 -   130595 I

a score=104989.000000
s ce10.chrX             4620067 221 + 17718866 ATGTGTGAG-----TGCAGGACG--CGAAAACCAATTATAACGATGTGTCTTGTTTCTGTGGATGG------------------------------GATGGAATTGAAAATGTTTTTCATCAGAGCAAGAAGAGGAA--------------------AAAGGAAAAGGAGACGAGGAAGAGAAGGGCGTAGGAGCCTTCTTTGCGT--GAGCGTATTCGTATAGGGGGGGG--------GGGGATGGCGAAAATAAAAGAGCG---------GGA-GGAAA-----GAGAGCAAG-GCAAAAAG
s cb4.chrX              9958060 287 + 21540570 ATGTTGGggagaaatggaaaatggagGAATACCAATTATAACGATGTGTCTTGTTTCTCTAGATGGGAGAGGAAATAGAAGAAGGCGGGGTGGGGAGAtggaattgaaaatgtttttcatcaagagcaagagcggag-------aaaaatggggcaaaaagaagaagaaaaagaggaaaagatgGGCGTAGGAGC---CTTGGTGTGAGAGCCTATTCGTATAG----GGGGTAGCGGCGagcattg-aaaaataaaagggcgGGAgtagaagga-agaaaaaaccgAGAGCATT-GCAGAAAG
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0  1553090 207 -  4500979 ATGTGTGAG-----TGCAGCATG--TGAAAACCAATTATAACGATGTGTCTTGTTTCTCCAGA---------------------------TGAGTAGATGgaattggaaatgtttttcatcagaggaaaaagagga----------------------------aaggaaaagaggaagagatggGCGTAGGAG----CTTGGCGT--GAGCCTATTCGTATAG----GGG--------aagcattg-aaaaataaaagggCG---------GGA-AGAAA-----GAGAGCACG-GCAAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   285366 246 +   386604 ATGTGTGAG-----TGTGGTATA--CGAAAACCAATTATAACGATGTGTCTTGTTTCTCGAGATGGGAAAAGA--------------------GGagatggaattgaaaatgtttttcatcagAGCaagaggaaaaacgggaaaaaagaagaagaagaaggaaaaagaagaagtggaagagaaggGCGTAAGAG----CTTGGCGT--GAGCGTATTCGTATAGAGAAGGG--------Gagcattg--aaaataaaagggCG---------GGA-GGAAA-----GGGAGCATGAGCAAAAAG
i caeSp111.Scaffold622  I 10 C 0
s caePb3.Scfld02_0      2881789 221 +  4147112 ATGTGCCAG-----TGTGGCATA--GGAAAACCAATTATAACGATGTGTCTTGTTTCTCGAGATGGGAGCGGA----------------------Cgatggaattgaaaatgtttttcatcgcagcaagaggaaaaa--------------------aacggaaaaggagaagaggaagagaaggtcGTAAGAG----CTTGGCTC--AAGCGTATTCGTATAG---AGGG--------Aagcattg--aaaataaaagggCG---------GGATGGAAA-----AGGAGCATG-GCAAAAAG
i caePb3.Scfld02_0      I 64 C 0
e caeJap4.Scaffold17739  126780 3387 -   130595 I

a score=-1374.000000
s ce10.chrX             4620288 15 + 17718866 TCGTCGTCGTCGTCG-
s caeRem4.Crem_Contig0  1553297  4 -  4500979 ------------TCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   285612  3 +   386604 ------------TCA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2882010  4 +  4147112 ------------TCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  126780 3387 -   130595 I
e cb4.chrX              9958347  6 + 21540570 I

a score=34426.000000
s ce10.chrX             4620303 394 + 17718866 TAGAGGGAAACACACCACCACATGC--------ACAAAATAATGCTCGGCTTCCCCCAATTCAGA-TGGTTCGACAT-----CTGCTCCGATTCGG------AGAGTTGCCATGGTAGTT-------------GCGAA-------------------GAAAAAGCAA-AAGGGATGATGTATTT--TGAA--------GACGTGTCTCTCTGAGAAAACGCGGCAGAAAAATTTCGACGAC--ATATATCCACTCAACATGCTATACGTGCA---CACATTTG-----------TAAGT----------GCTCTTCTCAGGTGAATCAGAAATATTTAC----GATTAGAGTAAGACAGAATGACAGAAAACGAAGGAATAAAAAAATTGCGA-----TACAA---------------AAAAAACAAAAAATTCCGAGTACGGGAAACGAATGGATCTAAGACGTAAGATTTGAGTAATGATGATTCGAAGCAGCAAATGCACACAT
s cb4.chrX              9958353 375 + 21540570 tagaatgaaaaaaac--------gatttggaccaaaaaataaTGCTCTTT----TTCAATGTGAA-GGGTTCGCTTTGACAGATGTCTCATTCGGCGGATTGGCAGTTACCATGGATGCGTGTTTGTCTCGGATCGAAAAGGGATGAGTCTCAGCATGACGAAGACATAA--GACGATGTATCCAACGAC--------GAC------------GAAGAAAGAGGATGCAAAA-TTTACGAT--GTATATCTTCTTGACATGCTATATATGTA---CATC---------------TAAATGCAGACGGGAGCTC----CAGGTGAA---AG-ATATATAC----GACT------------------------------Actaaaaaaa-----------gacaa---------------gaaataaaaaaggataggaatacgagggaccaaaaaaaCGAAGGCA-AGGATTTGAGTAATGATGATGCGATGCAG---ATACAT----
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0  1553301 337 -  4500979 ---AAGAGGAAGCAT--------GA--------ACAAAATAAtgctttttt--ctctattttgaG-GGGTTCAACATCACC-AGGTCCGATTCGGT---------GTTGTCATGGTAGTGT------------CCAAAATGGG--------------GATTAAGAAA-AA--GATGATGTATCCTACGAC--------GTCttg-------gagaaaagagaagatgcaCACTTTTACGATACATATATCTCTTTGACATGCTATATGTGTA-TCCACA---------------TAAAT----------GCTCCGCTCAGGTGAATCgga-aaatatac----gacg------------------------------aaaaaggaaaaaggaagatgtggaaa---------------gaaggaggaaaaaaaagaagtacgacgga----------aaaTGCA-AGGATTTGAGTGATGATGATTCGATGCGG---ATACAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   285615 326 +   386604 AGGAAggaaacacac--acacatgc--------ACAAAATAATGCTTCATT---TCTATTCTGAAGGGGTTCGTCAT-----CTATCTCTTTGAAT--CCGGGAAGTTGCCATGGAGGTA-------------------------------------GACGATGTGA-A------GATACATTTAATGACC-------GAC------------AAAGACGAAAATTGGGAAT-TTTACGAC--ATATATCTTTCTGACATGCTATATGTTTA---TATCCTGGTTT--------TATAT----------GCTCTTTGCAGGTGGATCAAAGGAATATACTACGgaat------------------------------aaggaaaaaaagaaga-----tgaga---------------tggaaggaagaaaatgagagtgC--------------------GCG-AAGGATTGAGTAATGATGATTCGATGAGG---ATGCACAAAT
i caeSp111.Scaffold622  C 0 I 351
s caePb3.Scfld02_0      2882014 360 +  4147112 AGGAAGGAAACACAC--ACAA--GC--------ACGAAATAATGCTTCACT---TCCATTTAGAA-GGGTTCGTCAT-----CTGCTCCTC-----------GTGGTCGTCATGGCAGTGA------------CCCAGATTC---------------GAGGAAGGAA-A------GACGCATCTAATAAGCCCCTTtggat------------gaaaatagaaatggaaGACGTTTACGAC--ATATATCTTTTTGACATGCTATATGTGTAATGTGCTTCGGTTTTCGTAGGATAAAT----------GCTCCGCGCAGGTGAATCGGA-AAATATAC----GACT------------------------------ACgaagaaaacggaga-----cgaaaatggaaatggatgcgggaaaagaggaaaataagagtacgaa-------------aaagGCA-AGGATTTGAGTAATGATGATTCGATGCGG---ATGCACAAAT
i caePb3.Scfld02_0      C 0 I 389
e caeJap4.Scaffold17739  126780 3387 -   130595 I

a score=-814.000000
s ce10.chrX             4620697 16 + 17718866 GTATC-CGCTTTTCCCA--
s cb4.chrX              9958728 17 + 21540570 GAATCTCGTGTTTTTCA--
i cb4.chrX              C 0 I 2040
s caeRem4.Crem_Contig0  1553638 16 -  4500979 AAATC---CACATTCCATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2882374 389 +  4147112 I
e caeJap4.Scaffold17739  126780 3387 -   130595 I
e caeSp111.Scaffold622   285941 351 +   386604 I

a score=674.000000
s ce10.chrX             4620713 53 + 17718866 T--TGCGG--TATTATAGAAAAATGAT------AATCTTGCTTTCCAGAAAAT---ATAAAAAGAA
s caeRem4.Crem_Contig0  1553654 63 -  4500979 TTATGCGGATTTCTttaagaaaatgatgattcaGATCTTACTT---AGAATATCAGATAAAAACAA
i caeRem4.Crem_Contig0  C 0 I 321
e caePb3.Scfld02_0      2882374 389 +  4147112 I
e caeJap4.Scaffold17739  126780 3387 -   130595 I
e cb4.chrX              9958745 2040 + 21540570 I
e caeSp111.Scaffold622   285941 351 +   386604 I

a score=0.000000
s ce10.chrX             4620766 900 + 17718866  
e caePb3.Scfld02_0      2882374 389 +  4147112 I
e caeJap4.Scaffold17739  126780 3387 -   130595 I
e cb4.chrX              9958745 2040 + 21540570 I
e caeSp111.Scaffold622   285941 351 +   386604 I
e caeRem4.Crem_Contig0  1553717 321 -  4500979 I

a score=546.000000
s ce10.chrX             4621666 1 + 17718866 A
s cb4.chrX              9960785 1 + 21540570 a
i cb4.chrX              I 2040 I 2
s caeSp111.Scaffold622   286292 1 +   386604 a
i caeSp111.Scaffold622  I 351 C 0
s caePb3.Scfld02_0      2882763 1 +  4147112 a
i caePb3.Scfld02_0      I 389 C 0
e caeJap4.Scaffold17739  126780 3387 -   130595 I
e caeRem4.Crem_Contig0  1553717 321 -  4500979 I

a score=49668.000000
s ce10.chrX             4621667 178 + 17718866 --AGAAACAAAT---CAAAAAAAAAAGA--------ATGGGAATGAAAAAGA---CAAATATAAATGATATGCATGTAACACAGTGAAAACAACAGAATA--------------------------------------------GAAAGACTAGAACACATATTTTTCCAGGACACTGGTGTGATTCTTTGT------GTATAAGTGGGAGGAAGAAAAAGAGAATTGGGAAAAAATAAAGAAG--
s cb4.chrX              9960788 234 + 21540570 --gaagac--aa---tgaagaaagaagaatgaatagaggggaatggaagagaaacaaaatatgaatgaTATGTATGTAACACACTGAAAACAACTGGATCACagcaaaaaagacaaaaacgaacagaaaaaaaaactagtgaaGAAGAACATGGAGCACATATTTTT--AGTACGCTGGTGTGATTCTGTGTGCATGTGTATACGTGGAAAGAAGcgaaatggaaaatggaaga---GGAGAGGTT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1554038 162 -  4500979 --aaagacgaag---tgaggaaagaaga---------------------gaaaagaaaatatgaatgatATGTATGTAACACACTGAAAACAACTG-----------------------------------------AATGGCGTAGAAGACGGAACACATATTTTT--AGTACACTGGTGTGATTCTCTGTGTGCGTGTATGTATGTATTcgtgagaa----------gaaaa---tgagagg--
i caeRem4.Crem_Contig0  I 321 C 0
s caeSp111.Scaffold622   286293 166 +   386604 agaaaaacattc---tgaaaaggaaaga------aaatgggaaagacg-------aaaaTACGAATGATATGTATGTAACATAGTGAAAACAACTGAATAG------------------------------------AGAGAACGAAGGGACGGAACACATATTTTT--AGTACACTGTTGTGATTCTACGTGTA---GTATAcgt--------gagaa----------gaaaa---aaatgag--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2882764 160 +  4147112 agaaaaacataaaggagaagaggaaaga------aaatgggaagggagaagacaaaaaatatgaatgataTGTATGTAGCATACTGAAAACAACG-------------------------------------------------GAAAGAACGGAACACATATTTTT--AGTACACTGGTGTGATTCTATGT------GTATAcgt--------gagaa----------gaaaa---tgagagg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17739  126780 3387 -   130595 I

a score=33227.000000
s ce10.chrX             4621845  90 + 17718866 GTTCTGAAAAGAGCTGG--------TTGAA------AGACGAAAAGGGGGTTTGTTAGTTGGCTT---AGGCGAGAAATTGGAATAGGAATCGCGATATACGCCTTC
s cb4.chrX              9961022  87 + 21540570 TTTCTGAACGGGTGAGg--------ctaaaaaat--agagaaaaaaaggttttgt--gTTGGCTTT--AGGCGCGAAATT------GGAATCGCGATATACGCCTCt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1554200  86 -  4500979 -tTCTGAAAAGAGCTGG----------------T--GAAGAGAAAATGGGTTGGTTGGTTGGCTTT--AGGCGAGAAATTGGAATAGGAATTGCGATATACGCCTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   286459  97 +   386604 -----gagaagaaattctgaatgaaaagaagaac--ggatgaaaaaagGTTGCGT-GGTTGGCGTC--AGGCgagaaattggaataaaaatCTCTATATACGTCTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2882924 101 +  4147112 ttTTCGAATAGAAACGC--AAGGAGTGGAAAAACCGggataaaaaatgagt---t-ggATGGCTTCAGAGGCGAGAAATTGGAATTGGAATCGCGATATAcgcctct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17739  130167  88 -   130595 GCTGTGAAAAGAGCTTA-----------GA------GGCGACGAGGAGGTTTGGCTGCTTAGTTGG--AGGCGAGAAATTGAAATTGGAATAGCAGTATACGCCTCC
i caeJap4.Scaffold17739 I 3387 N 0

a score=48425.000000
s ce10.chrX            4621935 421 + 17718866  
s cb4.chrX             9961109 449 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1554286 437 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  286556 463 +   386604  
i caeSp111.Scaffold622 C 0 I 11
s caePb3.Scfld02_0     2883025 437 +  4147112  
i caePb3.Scfld02_0     C 0 I 146

a score=-1854.000000
s ce10.chrX            4622356 1 + 17718866 C-
s cb4.chrX             9961558 1 + 21540570 -G
i cb4.chrX             C 0 I 21
s caeRem4.Crem_Contig0 1554723 1 -  4500979 -T
i caeRem4.Crem_Contig0 C 0 I 64
s caeSp111.Scaffold622  287030 1 +   386604 C-
i caeSp111.Scaffold622 I 11 C 0
e caePb3.Scfld02_0     2883462 146 +  4147112 I

a score=-4567.000000
s ce10.chrX            4622357 44 + 17718866 ACATAAACTTCATCA-------GAGAGGCACTAGAGACGACGC-TGAGTTGC----------------------
s cb4.chrX             9961580 67 + 21540570 TTTTGAATTACAGCT-------GAAAAAGACTAACTTGAAAGAGTGTACTGACGAGTGGGATTATATTTGTtac
i cb4.chrX             I 21 I 32
s caeSp111.Scaffold622  287031 50 +   386604 ----AAATTA-GGCTCTTTATAGAAATGGGTGAGACCGATCGAATGAGCAGATGA-------------------
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2883462 146 +  4147112 I
e caeRem4.Crem_Contig0 1554724 64 -  4500979 I

a score=-10216.000000
s ce10.chrX            4622401 33 + 17718866 -------------CTAGAAAATACGC---AACAAAATAA-------------------AATAGTGAGA------
s cb4.chrX             9961679 28 + 21540570 C----------CAAAAAGGAA--------TATAATAGAA------------------------AAAGAG----G
i cb4.chrX             I 32 C 0
s caeRem4.Crem_Contig0 1554788 74 -  4500979 CGTGAGCCGGGCAGAGGGGGATTTGCTCGTAttatataatattttttgtttaacgCATATTTGAATGAACATCG
i caeRem4.Crem_Contig0 I 64 C 0
s caeSp111.Scaffold622  287081 42 +   386604 -------CCAGAAGAAGGTAGTGTGcagatgaaaaagga-------------------aaaagaaaga------
i caeSp111.Scaffold622 C 0 I 69
e caePb3.Scfld02_0     2883462 146 +  4147112 I

a score=90235.000000
s ce10.chrX            4622434 494 + 17718866  
s cb4.chrX             9961707 546 + 21540570  
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1554862 541 -  4500979  
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  287192 566 +   386604  
i caeSp111.Scaffold622 I 69 I 5
s caePb3.Scfld02_0     2883608 559 +  4147112  
i caePb3.Scfld02_0     I 146 I 118

a score=-15558.000000
s ce10.chrX            4622928 105 + 17718866 -----------------CTATTCT-----CATACTTATATACA----TATTCTGCTAAAAAATGTTCG------CTTT--GATGTTTAACATGCTTTTTTATAAATATTTCTTTCATGTCTTCCCCATTGCGAAAAAAG--------------------------------------------------
s cb4.chrX             9962253 122 + 21540570 ttttttcaagtacttttctcctttttctatAGTTGTCGAATCA----TGTTCT--------ATGATCG------TTTCTATCTCTTT---TTGCTTTCTTACGTATAAATAGCTCCTATTTTGAATAATACAGTTATgaatt----------------------------------------------c
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0 1555403 154 -  4500979 tttctG-------TCTTCTATTTCTTTCGTATGTTTGGGACAA----TGTTCT--------ATGGtca------ttcc--attcttt---tttcctcgttttgtctca-----tctctttttcagtttctcaacTCTAAACTTCCCGTTAGTTAGCTAAATTTAAACTGTAACATTGAGTGTCagaaac
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  287763 134 +   386604 -----------------ctacTTTC----CATCtttagaattatttttgttct--------agtgtcatattttttcc--gtttttt---acgctttgtttcattttttaaagttattttttactatatacattttcatatt-acGAATACTTCgctgatattgaaaag--------------------
i caeSp111.Scaffold622 I 5 C 0
e caePb3.Scfld02_0     2884167 118 +  4147112 I

a score=-5.000000
s ce10.chrX            4623033 20 + 17718866 AACTGAAAATGT----------TTAGATCT
s cb4.chrX             9962375 20 + 21540570 gtctgaaaattt----------gcgaaGCT
i cb4.chrX             C 0 I 24
s caeRem4.Crem_Contig0 1555557 20 -  4500979 gactgaaaattt----------gtgaatgt
i caeRem4.Crem_Contig0 C 0 I 15
s caeSp111.Scaffold622  287897 18 +   386604 ----aagaaaat--------agacaAATTT
i caeSp111.Scaffold622 C 0 I 29
s caePb3.Scfld02_0     2884285 30 +  4147112 aatttagaatatttGAGATGCGACAAACGC
i caePb3.Scfld02_0     I 118 I 1

a score=823.000000
s ce10.chrX            4623053 16 + 17718866 CTTGCTCTTGACGCTC---
s cb4.chrX             9962419 18 + 21540570 CTTGTTATTG-TGCCACTG
i cb4.chrX             I 24 C 0
s caeRem4.Crem_Contig0 1555592 17 -  4500979 -CTATTATTG-TGCTACTG
i caeRem4.Crem_Contig0 I 15 C 0
s caePb3.Scfld02_0     2884316 15 +  4147112 ---CCTATTA-TGCTACTG
i caePb3.Scfld02_0     I 1 C 0
e caeSp111.Scaffold622  287915 29 +   386604 I

a score=36340.000000
s ce10.chrX            4623069  99 + 17718866 AGCCAAATTGAAAAAGTGCGTGACGGCAGGCAATTTCAGAGAGAGTA-----------------------------GGAAAATGGAGCTGTCT--------TCCGTCAAAACACCTCCAA-----CAATTGTTG--TGGGGAA
s cb4.chrX             9962437 123 + 21540570 AgccaaattgaaaaagtgcGTGACGAcagccaatttcagaaaaaattgcaagGAAATGGAGAAAGACAGAGAAAACGGAAGATGAGTCT----------TCTCCATCAAAACACCTCC---------Actgttggttttgaa-
i cb4.chrX             C 0 I 151
s caeRem4.Crem_Contig0 1555609  94 -  4500979 AgccaaattgaaaaagtgcGTGACAGCAGGCAATTTCGGAGAAAA-------------------------------GAAGGGTGTGCCT------------TCCATCAAAACACCTTCGA-----CGACGGTTGGTTTCGAA-
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  287944 103 +   386604 GgccaaattgaaaaagtgcgTGACGGCAGgcaatttcagagaaaa-------------------------------gatgaG---GTCTGTCTCTCTTACGCCCATCAAAACACCTTCCAA----CGACTGTTG--TTCAAAA
i caeSp111.Scaffold622 I 29 C 0
s caePb3.Scfld02_0     2884331 110 +  4147112 AgccaaattgaaaaagtgcgTGACGGCTGgcaatttcagagaaaa-------------------------------gaagtGTGTGTCTGTCTTCTTTCCTTCCATCAAAACACCTCCCCAACGTCGACGTTGG--TGGAAAA
i caePb3.Scfld02_0     C 0 C 0

a score=720.000000
s ce10.chrX            4623168 28 + 17718866 TAGGGAAATTACAAAATTACATAGGAAT
s caeRem4.Crem_Contig0 1555703  8 -  4500979 --------TAgtgaaa------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288047 20 +   386604 TAGGGAAGTAACGAAA-------GGAA-
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2884441 21 +  4147112 TACGGAAATAACAAAA-------GGAAT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9962560 151 + 21540570 I

a score=-4008.000000
s ce10.chrX            4623196 102 + 17718866 TTTACATTTGAATATAAAAGTGGGCAAAATTAAAAAAAAAACGTTTTCCATAATGCCAAAAAAGTCAAATACCATAGAGAAACTTTAAAAATaaaaataaaa----
s caeRem4.Crem_Contig0 1555711  49 -  4500979 -ataacaaagaatAGAC-----GGC----------------------------------------------TCATAGA-AAACTGGAAGActagaaatgaac----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288067  46 +   386604 --TACATTAGAATA---------------------------------------------------------CTATAGA-ATATGGAACAAATGTCAGTGAAAGAAA
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2884462   0 +  4147112 C
e cb4.chrX             9962560 151 + 21540570 I

a score=-3905.000000
s ce10.chrX            4623298 28 + 17718866 atactttttgagaaaactatagaacttt
s caeRem4.Crem_Contig0 1555760 12 -  4500979 aaaattagGGAA----------------
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288113  9 +   386604 GCAGTTTCT-------------------
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2884462 21 +  4147112 ACACTTCTCGTA-------TAGAATTCT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9962560 151 + 21540570 I

a score=-5900.000000
s ce10.chrX            4623326 107 + 17718866 tgaatgttcgaatccctacaatagttgagtactaatatttaaaacataaatagaccataaaattcaaatgaaattttttattgaatatttccgaaaaaatagtaaaa
s caeRem4.Crem_Contig0 1555772  17 -  4500979 ----------------------------------------------------------------------------TCTACTG---------GAAAAAGCAG-----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288122  33 +   386604 ---------------------TAGTC-----------------------------------------------TCTCTTATTG--ttcgacaaaaaaagaagc----
i caeSp111.Scaffold622 C 0 C 0
e caePb3.Scfld02_0     2884483   0 +  4147112 C
e cb4.chrX             9962560 151 + 21540570 I

a score=-15323.000000
s ce10.chrX            4623433 238 + 17718866 --actaagtaatgagttttttttgaaataaaattgatagttaaatattttttgaaaggttttattatgatatttggtcattttggtgctataaatagagagctgttttcaacaatttcttaaaaaatttttaataaattaaataagaattttaGGTTCTTTTAGTT----TATTGTTTTCGTAAAAAGCACAACAAAAATACAATTTTTTTTTCTAAACGTCACTGTGTAGAGTTGATGCGGCG
s caeRem4.Crem_Contig0 1555789 110 -  4500979 TCATTCACAagttactttt--------------------ttaaa-aaggatAGAAAAGCATTTACCTC----------------------------------------------------------TTCTTGA-------------A-----ACGTGTTGTCAATTCAAATATCATTTACG------------------------GTTGGTGAATGAA---------GAGCAATTTTTGC----
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288155  82 +   386604 --gctacagaat------------------------------------------------------------------------------------------------------------------tttcgaatatgaaaagaaaga-----aagtgCTGTCAGTTCGCATATCGTTCGC----------------------------GGGCATTGAG---------GTAAAATTGATGC----
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2884483 165 +  4147112 --Actagaaaatgagttttgggacaaacaaaaac----gttgaa-ggaacaagaaaagttctgtttttttctctgttctccctagtacaagaa---------------------------aaaaaattctcaatatcgaaaaaaaga-----aagtgctgTCAACTCGTATATCGTTCGC---------------------------TGGGTTTTGAA---------GTAAAATTGAAGC----
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             9962560 151 + 21540570 I

a score=5730.000000
s ce10.chrX            4623671 6 + 17718866 TTGACG
s cb4.chrX             9962711 6 + 21540570 TTGACG
i cb4.chrX             I 151 C 0
s caeRem4.Crem_Contig0 1555899 6 -  4500979 TTGACG
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold622  288237 6 +   386604 TTGACG
i caeSp111.Scaffold622 C 0 C 0
s caePb3.Scfld02_0     2884648 6 +  4147112 TTGACG
i caePb3.Scfld02_0     C 0 C 0

a score=79081.000000
s ce10.chrX             4623677 193 + 17718866 GAGTAATCGTCA--CTCGCC---------ACA-AAAAATTAGATTCGTTGAGTAACGGCGGAAAGAAAAAGAAAAAAAAATATTTTTCATCTCCA-TCCATTTTCTTTGCTCGCG-----CGATGAAGATATGGGGGGCTCTGGTACTCG--ATTCTAGGACTCTTGTTGAATATCTCATTAGGGAGAG------------TGCATC------TAGAACAAGGAGAAGATG
s cb4.chrX              9962717 155 + 21540570 AAGTAATCGTCACTCTTACT---------ACACAGGAATTAGATTCGTCGAGTGACAGCT-------------------AAATtattcgtcttct-tctccgttttccg-ACACG-----AGATGAAGATAT------TC--AAGTCTCGATATTCAAGGACTCTTGCTGAATATCTCATTAGGGAGAG------------TGC----------------AAGAGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1555905 172 -  4500979 AAGTAATTGTGA--CTTACA---------AAACAATAATTAGATTCGTTGAGTGACGGAG------------------AAAattattcttcttca-tctaCTTTTTCTT-CCGCA-----CGAAGAAGATATCTGGCACC--AGCTCTCG--ATTCGAGGACTCTTGTTGAATATCTCATTAGGGAGAG------------TGCatc------ggaaaa-aagagaagatg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   288243 195 +   386604 AAGTAATCGTCACtcgcacacacacacacacacaaaaattaGATTCGTTGAGTGACGgca-------------------aaattattctttttcgttcttctttcttcg-tACTA------GATGAAGATATCTGGGACT--GGCTCTCG--ATTCGAGGACTCTTGTTGAATATCTCATtaggaagaaagagagtgtGACTGCATt------aaaaagtgagagaaaacg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2884654 181 +  4147112 AAGTAATCGTCATTCACACG---------ACACAAAAATTAGATATGTTGAGTGACGACA-------------------Caattattcttcttca-tcttttttcttcg-tcgtACTCGCCGATGAAGATATCTGGCACTGGGGCTCTCG--ATTCAAGGACTCTTGTTGAATATCTCATTAGGAAGAG------------TGCATT------GAGAGACTAGAAAAGAtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    4347 150 +   591668 GAATAATTGTCG--------------------CAAAAGTTAGATTCGTTGAGTGACGCCG---------------GCCAAATTTATGCCTC-----TC------------GCGCG-----AGATGAAGATATCTGGCTTG------CTCG--ATTCAAGGAC----GTTGAATATCTCATTAGTGGGAG------------TGCATCAGCGGAGGAAACAGAGAGACGATG
i caeJap4.Scaffold17934 N 0 I 649

a score=9266.000000
s ce10.chrX             4623870 73 + 17718866 -TCGGGAATA----TTTTCACATCGAGCAAAAAGGAGCAAAAAAAGTGGCGAAAAAAAGGAAT---CTTCGTCATTTTCAT
s cb4.chrX              9962872 69 + 21540570 ----ggaatagtttttttcg--------aacaagaagaaaaaaaataaggagaAAAACGGAGCTCTCTTCGTCATTTTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1556077 47 -  4500979 -tcgggaata----ttttca--------gaaaaaaagagaagaag---------------------cttCGTCATCTTTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   288438 50 +   386604 tggagaaata----ttttca--------gaaaaaaactaaggGAGAT-------------------CTTCGCCATTGTCAT
i caeSp111.Scaffold622  C 0 I 723
s caePb3.Scfld02_0      2884835 40 +  4147112 ------aata----tttcca--------gaaaa-----aagaaagaca------------------ctccgtcattttcat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    4497 649 +   591668 I

a score=-1503.000000
s ce10.chrX             4623943 22 + 17718866 TCGACGCTTCAGGA-AAAAAAT-G
s cb4.chrX              9962941 23 + 21540570 TCAATCGGTTGAGAGAAGACATG-
i cb4.chrX              C 0 I 1484
s caeRem4.Crem_Contig0  1556124 21 -  4500979 CCGAAACGTTGTGA-AAGGGAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2884875 22 +  4147112 tcaaggcgttggaatgaaaaag--
i caePb3.Scfld02_0      C 0 I 1309
e caeJap4.Scaffold17934    4497 649 +   591668 I
e caeSp111.Scaffold622   288488 723 +   386604 I

a score=0.000000
s ce10.chrX             4623965 3 + 17718866 GAA
e caePb3.Scfld02_0      2884897 1309 +  4147112 I
e caeJap4.Scaffold17934    4497 649 +   591668 I
e cb4.chrX              9962964 1484 + 21540570 I
e caeSp111.Scaffold622   288488 723 +   386604 I
e caeRem4.Crem_Contig0  1556145 0 -  4500979 C

a score=1281.000000
s ce10.chrX             4623968 61 + 17718866 GCAGTGTGGCGAAAACGCGCATCAGTAGTGTGAGAATTGAATTGAAAGAGAAAAACCAATT
s caeRem4.Crem_Contig0  1556145 58 -  4500979 ---GTTTGTAGAAAAGTAGTATACATGGTTGGATAGCTAAACTGacagaaacaaataaatt
i caeRem4.Crem_Contig0  C 0 I 213
e caePb3.Scfld02_0      2884897 1309 +  4147112 I
e caeJap4.Scaffold17934    4497 649 +   591668 I
e cb4.chrX              9962964 1484 + 21540570 I
e caeSp111.Scaffold622   288488 723 +   386604 I

a score=0.000000
s ce10.chrX             4624029 1229 + 17718866  
e caePb3.Scfld02_0      2884897 1309 +  4147112 I
e caeJap4.Scaffold17934    4497  649 +   591668 I
e cb4.chrX              9962964 1484 + 21540570 I
e caeSp111.Scaffold622   288488  723 +   386604 I
e caeRem4.Crem_Contig0  1556203  213 -  4500979 I

a score=1359.000000
s ce10.chrX             4625258 191 + 17718866 CTGGAAACAAAAAA-----TTCACGTGTTCTCGCA-----TTTGTAACTATAGAAACACCGCGA--------TTTTACAC--------AACACCTCT------------CATTTCAAGTGAGCTCTGGAAAA--AAAAAATTTCA---------------AAAGTTTTAGTCTCT-GTGGTTTCCTTAT------GACTGACTAGCTTCGAAGTGCAAGTACGCGTATCTTTGTTGTATTTCTCATCCAGCAC
s caeRem4.Crem_Contig0  1556416 245 -  4500979 ctgaaaacacaaaaacataGTCACAAGCTTCTGAAGTGTTTTTGCTACTATAGAAACAAGGCCACGTATGCTTTTCACACCTCTCCCCAACACCTCGACATttcacaaacattttttgtgagcTCTCCAAACCTGGCGAGTCTCACTGTTTATCtccttgaaattttgagtttttagttctttccttctttccaaGAGTGTCTAG----AAAGTACAAAAA----GAACTCGGATGTGCTTTCTGTCCAGTTC
i caeRem4.Crem_Contig0  I 213 C 0
e caePb3.Scfld02_0      2884897 1309 +  4147112 I
e caeJap4.Scaffold17934    4497 649 +   591668 I
e cb4.chrX              9962964 1484 + 21540570 I
e caeSp111.Scaffold622   288488 723 +   386604 I

a score=-556.000000
s ce10.chrX             4625449 2 + 17718866 TT-
s caeRem4.Crem_Contig0  1556661 2 -  4500979 -TG
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold622   289211 2 +   386604 TT-
i caeSp111.Scaffold622  I 723 C 0
e caePb3.Scfld02_0      2884897 1309 +  4147112 I
e caeJap4.Scaffold17934    4497 649 +   591668 I
e cb4.chrX              9962964 1484 + 21540570 I

a score=17751.000000
s ce10.chrX             4625451 39 + 17718866 CTCAAAATGAAAGATGACAGAACGTTAACAGAATACGAA
s cb4.chrX              9964448 37 + 21540570 CTCAAAATGATTAATTGCGGagagttaacacattttt--
i cb4.chrX              I 1484 C 0
s caeRem4.Crem_Contig0  1556668 39 -  4500979 CTCAAAGTGACAAATAGCAGTACGCTAAGAGAATACGAA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622   289213 39 +   386604 CTTAGAATGACAGATGGCGGAACGTTAACAGAATAGGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2886206 39 +  4147112 CTCAAAATGACAAATGGTCGAACGTTAACAGAATATGAA
i caePb3.Scfld02_0      I 1309 C 0
e caeJap4.Scaffold17934    4497 649 +   591668 I

a score=92864.000000
s ce10.chrX             4625490 503 + 17718866  
s cb4.chrX              9964485 549 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1556707 477 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   289252 511 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2886245 493 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    5146 461 +   591668  
i caeJap4.Scaffold17934 I 649 I 2368

a score=7453.000000
s ce10.chrX             4625993 33 + 17718866 TCTGGATACTTAATCGACGGTGTTTGTGTTCTT--------------------
s cb4.chrX              9965034 50 + 21540570 ACTCTTGAGTTAATCG-CAGTATTT--GTATCTGTCTGTCAATATCccttatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1557184 31 -  4500979 TCTGCTCACTTAATCG-CAGTATTT--GTGTCTG-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   289763 32 +   386604 TCGACTCACTTAATCG-CAGTATTTAtgtgtct--------------------
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2886738 32 +  4147112 TCTGCTCACTTAATCG-CGGTATTTACGTTTTT--------------------
i caePb3.Scfld02_0      C 0 I 43
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-2798.000000
s ce10.chrX             4626026 23 + 17718866 TTTGAATTCGAGATTT------ATCTGAT
s cb4.chrX              9965084 23 + 21540570 ttcattttcttctctt------tcttgcT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1557215  4 -  4500979 -------------------------TGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   289796 23 +   386604 ------ttcttctttcagaacgCTCTGTT
i caeSp111.Scaffold622  I 1 C 0
e caePb3.Scfld02_0      2886770 43 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-22874.000000
s ce10.chrX             4626049 50 + 17718866 -------------------------TGTCATTT------GTGAAGCT--------------------TTTGCTTTAATCTGATTTTAAT----------TCAAATTAAA-----------------GT
s cb4.chrX              9965107 97 + 21540570 CCTCGTTTT-AGCCATGTGTTCTGCTTTGATGAGACGAGAAGGAACGGAGGGGAAGGGGTTTT-CCAAAATGGATCATCTG--TTTAGT----------GCAAAATTGA-----------------GG
i cb4.chrX              C 0 I 187
s caeRem4.Crem_Contig0  1557219 53 -  4500979 CCTTCTTTTGAGTagcttgttttgttttgatga------aGAGAACG----------------------------------------------------GCAAATTGGG-----------------GC
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622   289819 59 +   386604 ------------------------TTCCAACGG------GGGTAACT---------GAATGCT-CTTCTACGCATCATCTG--TTTAGT----------GCATATTTGA-----------------GT
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2886813 93 +  4147112 -----------------TATCAT-CTGCGTAGT------GCAAAATT---------TAGTGGtgcctttttcttttgtcgG--CTTAGTCGGGGAAAAAGCAGATTCAGAATTCTAATCCTAATTTAT
i caePb3.Scfld02_0      I 43 I 1
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-11305.000000
s ce10.chrX             4626099 75 + 17718866 CCAACACTTAATTTCTTTCCTTTTGTGGCTTTTCTCGAAAATTTTCGATAACTTCCTCCAATTTTCCACAGCTTT------------------------
s caeRem4.Crem_Contig0  1557281 41 -  4500979 TCAATGTATCATTTGCTTAGTGC----------------AAATTTGAGT------------------GTCTCCTT------------------------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold622   289879 73 +   386604 ---GTGcccctttctctttctct------------------gtttGGACCATTCC-----ATGTGCTGCCTCCTTCTTTCTTGGCAACAAGacagattt
i caeSp111.Scaffold622  I 1 I 34
s caePb3.Scfld02_0      2886907 46 +  4147112 ---ACGGcgcgttttctttttgt------------------ctctttttcgTTC-------------GGCTCATTCT----------CAA---------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965204 187 + 21540570 I

a score=-2066.000000
s ce10.chrX             4626174 47 + 17718866 CTACAAATAATTATCGCAAGTTCTTGACTGTTGAATGTTGCTAAAAA
s caeRem4.Crem_Contig0  1557322 33 -  4500979 CTAAGA---------GCAATGTCTTAA-----GGGTGTGGCTCACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2886953 16 +  4147112 ----------------------TCTAG-----AAATGCTGCTG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965204 187 + 21540570 I
e caeSp111.Scaffold622   289952 34 +   386604 I

a score=-2823.000000
s ce10.chrX             4626221 11 + 17718866 TTTTCGCGAAA-----------
s caeRem4.Crem_Contig0  1557355  6 -  4500979 -------Aagaca---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   289986 11 +   386604 -----------CTTTTGTGCCG
i caeSp111.Scaffold622  I 34 C 0
e caePb3.Scfld02_0      2886969  0 +  4147112 C
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965204 187 + 21540570 I

a score=-2052.000000
s ce10.chrX             4626232 13 + 17718866 GTTTTTGCATGCT-----
s cb4.chrX              9965391 11 + 21540570 GTTTTTC--TGCT-----
i cb4.chrX              I 187 C 0
s caeRem4.Crem_Contig0  1557361 13 -  4500979 gattctg--aattct---
i caeRem4.Crem_Contig0  C 0 I 155
s caeSp111.Scaffold622   289997 13 +   386604 -TTTTTC--GGCT--AGC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2886969  0 +  4147112 C
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-395.000000
s ce10.chrX             4626245 11 + 17718866 -TCCGTGAAAGT
s cb4.chrX              9965402 11 + 21540570 TCCCAGGAAGT-
i cb4.chrX              C 0 I 45
s caeSp111.Scaffold622   290010 11 +   386604 -ATTGTGAAATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2886969 10 +  4147112 --TCGAgaaatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeRem4.Crem_Contig0  1557374 155 -  4500979 I

a score=-2870.000000
s ce10.chrX             4626256 41 + 17718866 CAATGGAAGTTTAGAGTTGTCAAAAGTTGTTGAAAGCTGTC
s caeSp111.Scaffold622   290021 20 +   386604 TG---------------------ACATTCTTGTCGGACGtc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2886979 14 +  4147112 ct----------------------cattcttttt-----tc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965413 45 + 21540570 I
e caeRem4.Crem_Contig0  1557374 155 -  4500979 I

a score=-4441.000000
s ce10.chrX             4626297 88 + 17718866 GAGAGTTCAAGCA---AAAGTTCTTAAAAAATCATGAATT--TTTCTTATTTGTTTGATTTAGAAACGATTTCGGTAAAGCA--AAATAATGTTA
s cb4.chrX              9965458 89 + 21540570 --AAGATTCAAAACGACAGATTCGGAAAAGACTGATGCTTCTTTACTGGTTCAGGAAGCTGTGGTCCAATATT----AAGAGATTTAtgactttt
i cb4.chrX              I 45 C 0
s caeSp111.Scaffold622   290041 78 +   386604 aagaatttcagaat------ttcg--taaaaatgaaagatctcatatttttcacttggttgcaattcaatttctt---------atataatttta
i caeSp111.Scaffold622  C 0 I 45
s caePb3.Scfld02_0      2886993 82 +  4147112 aaaaatttgaaaa-------------gagaattgtGACTTCAATTATCTTTCACATGGTTGCAATTCACTTCTTTGCAGGCAACATATAATGAGA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeRem4.Crem_Contig0  1557374 155 -  4500979 I

a score=-290.000000
s ce10.chrX             4626385 22 + 17718866 TTTGTTCACTTTATTTTCAATT--
s cb4.chrX              9965547 24 + 21540570 tctgttttctattttttccaaatt
i cb4.chrX              C 0 I 54
s caePb3.Scfld02_0      2887076 13 +  4147112 ---------TATATTCACCATA--
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeSp111.Scaffold622   290119 45 +   386604 I
e caeRem4.Crem_Contig0  1557374 155 -  4500979 I

a score=58.000000
s ce10.chrX             4626407 26 + 17718866 ATGTGTTAGAGATATCTGGTTCCGCA
s caePb3.Scfld02_0      2887089 20 +  4147112 ------TAAGGAAATTGAATGTTGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965571 54 + 21540570 I
e caeSp111.Scaffold622   290119 45 +   386604 I
e caeRem4.Crem_Contig0  1557374 155 -  4500979 I

a score=842.000000
s ce10.chrX             4626433 17 + 17718866 CTAATTACTCAATTTGC
s caeRem4.Crem_Contig0  1557529 17 -  4500979 TTAATTTCCTTATTCGT
i caeRem4.Crem_Contig0  I 155 C 0
s caePb3.Scfld02_0      2887109 12 +  4147112 -----TACTCAAGTAGC
i caePb3.Scfld02_0      C 0 I 60
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965571 54 + 21540570 I
e caeSp111.Scaffold622   290119 45 +   386604 I

a score=-281.000000
s ce10.chrX             4626450 17 + 17718866 --GTTTTATTAT-TATACTA
s cb4.chrX              9965625 17 + 21540570 --GCTTTATTAT-TGAGTCT
i cb4.chrX              I 54 C 0
s caeRem4.Crem_Contig0  1557546 20 -  4500979 ATTCTTTGAGATGTGAAACG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2887121 60 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeSp111.Scaffold622   290119 45 +   386604 I

a score=4461.000000
s ce10.chrX             4626467 12 + 17718866 --------ACTCAAGTAGTA
s cb4.chrX              9965642 20 + 21540570 AGCGCACTACTCAAGTAGCG
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0  1557566 20 -  4500979 ATTGCTATTCTCAAGTAGCA
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold622   290164 12 +   386604 --------ACTCAAGTAGCA
i caeSp111.Scaffold622  I 45 C 0
e caePb3.Scfld02_0      2887121 60 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=608.000000
s ce10.chrX             4626479 26 + 17718866 -TATAAGA----CTAGTCACGTCCAATTTAT
s cb4.chrX              9965676 26 + 21540570 -TGGGAAA----TGAGTCCAGCCGCATTCAT
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold622   290176 31 +   386604 ATAGAAAGAGATTGAAGAAAGCTCCATTCAT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2887121 60 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeRem4.Crem_Contig0  1557586 28 -  4500979 I

a score=300.000000
s ce10.chrX             4626505 1 + 17718866 C
s caeRem4.Crem_Contig0  1557614 1 -  4500979 C
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold622   290207 1 +   386604 C
i caeSp111.Scaffold622  C 0 I 5
e caePb3.Scfld02_0      2887121 60 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965702 0 + 21540570 C

a score=47433.000000
s ce10.chrX             4626506 135 + 17718866 --------------TCATATAAAATAAAC-AAAGC---GCTGACCCTCG-----TTCG-A-TGCTTGTTGCCGAGTTCGCCCACCGG-----CTCGTCTTAGCTTTTACACTA--TTTCTCTCTCGTCAAAT-CTT----CTCC----ATCTTACCACCATTTC-CT--CCCATTATAT
s cb4.chrX              9965702 153 + 21540570 ------CGCAAGAAGCCGATAAAATAAACAAAAGCCGTTTTGA-CCTCACATCGTTCGCACAGCTTGTTGCTGAGTT--CTCATTGGGACGACTCATCTTAGATTTTACACTACTTTTCTCTGTCCTCAACTACTC----GTTCTTCTCCTTTCCTCCCTCTGA-TA------------
i cb4.chrX              C 0 I 68
s caeRem4.Crem_Contig0  1557615 140 -  4500979 TCATTCTTCGCGAAGCcgataaaataaacaaaagc---GTTGA-CCTCA-----TTCTCA-AGCTTGTTGCCGAGTT--CTCATTGG-----CTCATCTCCGATTTTACACTA----TTTCTGTCATCGACT-CTT----TCTCTGATATTTTACCACCACCGC-TC------------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622   290213 137 +   386604 --------------GTCgataaaataaacaaaagC---TTTGA-CCTCG-----TTCG-A-TGCTTGTTGCCGAGTT--CCCATCGG-----CTCATCTTAGATTTTACACTT---ATTTCTGTCCTCGACT-CTT----TCTCTGATATCTTACTACCACCGC-ACAGCCCATCACA-
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0      2887181 142 +  4147112 --------------GCCgataaaataaacaaaagc---TTTGA-CCTCG-----TTCG-A-TGCTTGTTGCCGAGTT--CCCATCGG-----CTCATCTTAGATTTTACACTA---TTCTCTGTCAtcaact-ctttctctctctgatATCTTACCACCATTGCTTCGGTCTATCACA-
i caePb3.Scfld02_0      I 60 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-3335.000000
s ce10.chrX             4626641 79 + 17718866 GAATTTATCGTTAACATGTAGTTTGATGTGGTTTTCCATATTGCAATTGATATTAATTTGCGCAAAAAAAAATCTCGTC--
s caeRem4.Crem_Contig0  1557758 70 -  4500979 TCACTCGTAGTTAACATA-AGTTTATTGGGAAGCCGCATCTTTTCCATTCGATTC---------TAGTTTAGCTCCCTGt-
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   290350 48 +   386604 -----CATAGTTAACATA-AGCTTATTAT-AACCCACC----------gagattc-------------aaaattttct---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887323 59 +  4147112 -----CATAGTTCACATA-AGTTTATAGTGAAGCCACA---------GGAGATTCTT-------CGATGAAGTTTTCtgtc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9965855 68 + 21540570 I

a score=63822.000000
s ce10.chrX             4626720 192 + 17718866 -----CCATTTTCTTTTGCTAAATATTTATTTTCA---TTTGAGTG---------GCCGATTTGTGAGAAAATTTCGAGTAGAGTCACGTGTTGC----GGAAGATG-AAGGCTATAGC----CAAAAATATTTGAACATGTAAACGACATATTTTTCGGGTTTTTTCATTTT-----TTGCTGTTCAAAATACCTA--CGATTTTTGATGGCTCGAGTATTTTG-
s cb4.chrX              9965923 201 + 21540570 CCACTGTCTGCTTTgt-------tattta--ttcattttttaagtGTGCCTGAGAGATAGATTGTGGaaaaaaaC------GCATCACGTGAAGCTCACGGAAGATG-AGAGCAAGAGCAccacaaaaatatttgaacaTGTAGACGGCATATTTT------TCTTTCATGTCTCATTCTACTTTTCAGAATACCTACCTGGTTTTTGATGATT--GGTTTTTAT-
i cb4.chrX              I 68 I 2
s caeRem4.Crem_Contig0  1557828 188 -  4500979 --------cgattttt-------tattta--ttca---tttgaGTG---CTATGAGGTAGATTGTGGGAAAAAATGGAGTGGAATCACGTGTAGCTCAAGGAAGACG-AGAGTAAGag-----caaaaatatttgaacatGTAGACGacgtattttca----tttttcattcgtCGTTCTACCCTTCAAAATACcaa--tgatttttgatgatt--ggtATTTCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   290398 158 +   386604 -----ccgcgcttttt-------tattta--ttca---ttcgaGTG---CTGTGAGGTAGTTTGTGGGAAGAATTTGAGTGGCATCACGT----------GAAGATA-AAAGTAAGag-----caaaaatatttgaacaTGTAGACGACgtatttt----------------------ttaactttt------cttA--TGATTTCTGATGGTT--GGTTTTCCGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887382 175 +  4147112 -----ttggttttttt-------tattta--ttca---tttgagTG---CTGTGAGGTAGATTGtgggaaaaaatggagtggCATCACGTGTTGCTCACGGAAGATAGAGACTAAgag-----caaaaatatttgaacatgtAGACGACGTATTTT----------------------TTACTCTTCAAAATACCCA--TGATTTTTGGTGATT--GGTacttcag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-2007.000000
s ce10.chrX             4626912 18 + 17718866 --ATTTCA-GTTTATGAGAAA
s cb4.chrX              9966126 21 + 21540570 AGATTTTAAGCTTTTGAGGAA
i cb4.chrX              I 2 I 85
s caeSp111.Scaffold622   290556  6 +   386604 --GTCTCA-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887557  5 +  4147112 --atttc--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeRem4.Crem_Contig0  1558016  0 -  4500979 C

a score=-5352.000000
s ce10.chrX             4626930 102 + 17718866 AATAAAATTTTAAAGATAGCTTCAGTAGCAATTTCGTCAGAATTTATTTAAAATAGTACTTATATTAAAACGTTTTCAAGTTTTGATCAAGTTTGTACGTGT
s caeSp111.Scaffold622   290562  12 +   386604 -------------------------------------CTGA-------------------------------TATCCCAG----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887562  12 +  4147112 -------------------------------------caga-------------------------------tttcccgG----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966147  85 + 21540570 I
e caeRem4.Crem_Contig0  1558016   0 -  4500979 C

a score=-4865.000000
s ce10.chrX             4627032 53 + 17718866 GACCAACTAAATTTCTCAAATACTCATATTTGAATTCACTTC-aaaatatctct
s caeRem4.Crem_Contig0  1558016 28 -  4500979 ---------GAccttccaga-----ttttttgagttcactTC------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   290574 19 +   386604 ------------TTCCT---------CACTTGATCTCTCT--------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887574 37 +  4147112 ------------TTCTCAAA-----ACCCCTgaacttgttttcagaatattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966147 85 + 21540570 I

a score=-6192.000000
s ce10.chrX             4627085 109 + 17718866 ttttttggatatcgtccaaaattttgaaaacacagcaattaccattttttgattttaaattcacaacttcaatgcttttttgaaacgttttactattatataacaatta----
s caeRem4.Crem_Contig0  1558044  37 -  4500979 TCTCCATGATATC--TCAAA----------------------------------------GCGCTCATTCTATGG----------------------------CAGG------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2887611  44 +  4147112 tctt----atttc--ccaAA----------------------------------------TCTTAGCTTCCATAAATTCT-----------------------CAGTGACCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966147  85 + 21540570 I
e caeSp111.Scaffold622   290593   0 +   386604 C

a score=-18243.000000
s ce10.chrX             4627194 146 + 17718866 gtcactgttgcaccataaaatttgggtttttaactacatcccaactgtagctactTAAAAGTAATAGCTTGTTCTTTTCTTCTAAGTTCAAGCAATAACTTTCAT---ATTTTTAACTTTTTCTTGTGCACTTTTAAAGTAGCCATTTC-
s caeRem4.Crem_Contig0  1558081  48 -  4500979 ----------------------------------------------------------------------------------------CCTGCTGAAGCCTC-ATTGAGCATTGGCTCTTTTTATA---GTT----------GCATATTC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   290593  85 +   386604 GTGACTCTTGC----------TCATGTTTT-----------------------CATAAAACTCAT------TTCATTGTCTTCGAATTCGAGTTATGACCAT-AT---GTCGTTGCCTT-----------CT----------CCATTTT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887655  46 +  4147112 ------------------------------------------------------AGAAAA---------------------------TCAGATAGAGAGAGT-AT---ATATTGGCCTCCT--------ACT----------CCATTCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966147  85 + 21540570 I

a score=104163.000000
s ce10.chrX             4627340 265 + 17718866 --CCTTTTACTCCTATTCTATGGCTATCTTTCTCATCAAAAAAGAAAAGAAAAG------GAGAAACGAG--AAGTCCATAG--TTTTGAGCCAAAAAGACTCGCATAAAAA-TG--TGCTGCA-TGTGCAGCAGGTCAAGAAATATG--------------------------------TGTCCTTTCATCCACATGTTGCCGCTTCCTCATTTCTTTTTTTAC-CCGCT--------AAAATCAAGTACATTGAGTGTGAGAAAGA------------------TGTGTTG----------GCGTTTGTTTAAGTAGATTGTTTAAATAGCTGAGACATCGAAGATCT
s cb4.chrX              9966232 302 + 21540570 --CTTATTGCTGCTATCTT-------TCTTTctcatcaaaaaagaaaaagaa-----------aaagcgggTGGAACCATAGTTTTTTGA--CAGAGTGGCTCACATAAAAGTTGTATGCTGAGCCAT---GCAGGTCAAGAAATATgctattcgaa-aaaaagtggtCACATATG----TTTCCTTTCTTCCACATGTTGccatttttcc--ttctctt------cctCCAAGAGGAAAAATCCAAGTGCAATTGgtgtgagaaaaaatgagggaaTTTGTGTGTGTATCTG----------AAGTTTATTTGAGTTGGTTGTCCAAACAAATCAGACATtagaaatct
i cb4.chrX              I 85 C 0
s caeRem4.Crem_Contig0  1558130 283 -  4500979 --ATTCTTATTGCTATC-------------Tctcatcaaaaaaagagaagaaga-----caagagGGTGGTTGGGACCATAG--TTTTGA--CTGAGTGGCTCACATAAAAGTTG--TGCTGCA-TGT---GCAGGTCaagaaatatgtttttcgaacaaaaagtGGTCACACATGtgctttttcctttttccacaTGTTGCcgttttctc--atcatttcttAGCCCTTC-------TAAATTCGAGTACAATTGGtgtgagaaaaa------------------gtgtttg----------aaGTTTATTTGAGTAAGTTGTTCAAACAAATTAGACATTAAAAATCT
i caeRem4.Crem_Contig0  I 1 I 391
s caeSp111.Scaffold622   290678 273 +   386604 GTATCTCTATTGccttt-------------tctcatcaaaaaagatgaaaaaag------aagacaacgG--AAGACCATAG--TTTTGA--CAGACTAGCTCACATAAAAGTTG--TGCTCCA-TGT---GCAGGTCAAGAAATATGCCTTTCG--CAAAAAGTGGTCAcacatg----tttcttttcttccacatGTTGCCAGTTTCC----TCATTTCTTAG-CCGCT-------AAAAAGTGAGTTCAATTGATGTAAAATGAA------------------GTGTTTG----------ACGTTTGTTTAAGTAGGTTGTTCAAATAAATAAGACATTAAAAATCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2887701 291 +  4147112 TATTTTCTATTGCTATC-------------TctcatcaaaaagaagaaaaaaaagatggcaAGAGAGGAG--GGAACCATAG--TTTTGA--CTGAGTGTCTCTCATAAAAGTTG--TGCTGCA-TGT---GCAGGTCAAGAAATAtgctttttgaacaaaaagtggTCACATatg----tctcttttcttccacaTGTTGCCAGTTTCC----TCATTTCTTAG-CTGCT-------AAAAATCGAGTGCAATTGGTGTGAGAAAAA------------------GTGGATGTGTAGGAGCCGCGTTTATTTAAGTAGTTTGATCAAACAAGTTAGACATTAGAAATCT
i caePb3.Scfld02_0      C 0 I 380
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=-1545.000000
s ce10.chrX             4627605 26 + 17718866 ACGAGATGTACCTGTTTTTTTTGCTT---------
s cb4.chrX              9966534 26 + 21540570 ---------tcaatttttgtatttttgtctAGCTT
i cb4.chrX              C 0 I 372
s caeSp111.Scaffold622   290951 18 +   386604 --------Tccgaatctttttttcct---------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2887992 380 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e caeRem4.Crem_Contig0  1558413 391 -  4500979 I

a score=564.000000
s ce10.chrX             4627631 6 + 17718866 TCGAAT
s caeSp111.Scaffold622   290969 6 +   386604 tcgaaT
i caeSp111.Scaffold622  C 0 I 363
e caePb3.Scfld02_0      2887992 380 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966560 372 + 21540570 I
e caeRem4.Crem_Contig0  1558413 391 -  4500979 I

a score=0.000000
s ce10.chrX             4627637 890 + 17718866  
e caePb3.Scfld02_0      2887992 380 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966560 372 + 21540570 I
e caeSp111.Scaffold622   290975 363 +   386604 I
e caeRem4.Crem_Contig0  1558413 391 -  4500979 I

a score=182.000000
s ce10.chrX             4628527 2 + 17718866 TT
s caeSp111.Scaffold622   291338 2 +   386604 Tt
i caeSp111.Scaffold622  I 363 C 0
e caePb3.Scfld02_0      2887992 380 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966560 372 + 21540570 I
e caeRem4.Crem_Contig0  1558413 391 -  4500979 I

a score=3046.000000
s ce10.chrX             4628529 62 + 17718866 -------CTGAGAAAA-------GTAGAAACTGAACAAAAA----------CATGGTCTACGAAACATTAAACCTCTAGGGACCTA
s caeRem4.Crem_Contig0  1558804 75 -  4500979 cTAAGATTCGAGGGAactaaaccaaaaaaacggaagaagaa------aCATTAATATTCACG-----TTTGGTCTCTAGAGACCAA
i caeRem4.Crem_Contig0  I 391 I 12
s caeSp111.Scaffold622   291340 67 +   386604 -------ccgagaaaa-------gaaaacgcaGAGGAAAACATATCTACATTATTATTCACG-----TTTGGTCTCTTGAGACCAG
i caeSp111.Scaffold622  C 0 I 12
e caePb3.Scfld02_0      2887992 380 +  4147112 I
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966560 372 + 21540570 I

a score=3075.000000
s ce10.chrX             4628591 8 + 17718866 TAGTCATA
s caeRem4.Crem_Contig0  1558891 8 -  4500979 TAGTTTCA
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold622   291419 8 +   386604 TAGTTTCA
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0      2888372 8 +  4147112 TAGTTTCA
i caePb3.Scfld02_0      I 380 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I
e cb4.chrX              9966560 372 + 21540570 I

a score=2419.000000
s ce10.chrX             4628599 145 + 17718866 AGTTGACAACG-TTTCGGAACATGTTTTGGATGTTTTAGACATATGAAAGAAACTCTTAATCATA---T--TTTTCCCCACTTTTGT--TT------TTC-----AGA-----AACATTGTTTTCCACGTGGTTT--------------------TGGAAG---------AATAGCGAAGTCTTTATTTTCTCTTTTT
s cb4.chrX              9966932 146 + 21540570 AGTTGACAATGTTTTTGGAACATGTTTC----------------ATTACTGAA----CGCTCATA---Tgactgctttttttttctt--ttg-----ttctaGAAACAATAATAAAAACACCACCCACGTGTTTC--------------------TGCATCatctag--atttttaaaatctttaagTTCCCGACAAT
i cb4.chrX              I 372 C 0
s caeRem4.Crem_Contig0  1558899 166 -  4500979 AGTTGACAATG-TTTTGGAACAtgctttaa--------------aaaatcgaa----taatCATG---T--CTTGTGACTTTTCCCT--ATGATATTTTCCAGGAGAA-----AACAATAGCACCCACgtgtttcaaaaca-agaaacaatgCATTGAATGCTCCAGCCACTCCACGAACTTCATGGATTTCGTATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   291427 128 +   386604 AGTTGACAATG-CTGGAGAACATGCTCTGg--------------gaaagaaaacttttaatCATGCTTT--CTTGTGACAATGTGCttctt------ttctagaagaa-----aacaatgacaCCCACGTGTTTCATATCTTCGAAACAA-----TGAATG-------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2888380 116 +  4147112 AGTTGACAATG-TTTTGGAACAT---------------------GAAGCTAAAACTCTAATAATG---T--CTTGTGACTCTATGGT--TT------TTCTCGAACAA-----AACAATAACACCCACGTGTTTCAAATCGCAGAAACAA-----TGAACG-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    5607 2368 +   591668 I

a score=224329.000000
s ce10.chrX             4628744 407 + 17718866 AAACTTCATTTC-------------------A-TTGTTTATTTTTCTCA----TTTAAACTA--TGCATAG--CTTGAAA--ACAAAATTTTACTTTCCCAAGCTCATCTTGCTTCCATTCATCCCTTTCTTCGTATTTTCTCTTCCG--------AATTTTTTACTCT--CAT----------TGACTGGCCTGCACTAAGAATT--GAGATCAGA------GAAAATTGTGAATTGA---GAGAGATGCAAGACATTAAC-TTCTTCC-TGATGT-AAAGT--GTCAAAGAGA---GAACGCGGTTAGAGAAGCAAAGATGTGATTGTTTTCAGGTGACGAAGCTGAAGCGATGGAGCTCATTGACAAAACTGTCGAGCTGCGTGGCAGTCAAGTGCTCAATATGCACTCTTACCATTCAATCATCTGGCGGCGAAGGATTATGGCGTTTGCGACGCTTCTTGCATGGGTAGGT
s cb4.chrX              9967078 372 + 21540570 AAACTTCATATC-------------------T-TTGTTTATTTGTCCCG----ATCTAGCCGCCCGAATCATCTTCAGGA--ATATATCTTTCGCT------------------------------------------TTCtcttcct--------gattttttgctCTTCCGA---------TTGATGGGTCTGCACTGAGAATCCTGGAAGCAGATagagggagagaaagagattca---gaga---------ttttaaCTTTCTCTTCTGATGTAAAAAC--CCGAAACACT---G--TGTGTGGAGAGAAATAAAGATGTGATTGTTTTCAGGTGACGAGGCTGAAGCGATGGAGCTCATTGACAAGACAGTCGAGCTGCGAGGCAGCCAAGTTCTCAATATGCATTCGTATCATGCAATCATCTGGCAACGCCGGATCATGGCGTTCGCTACACTTCTTGCCTGGGTAAGt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1559065 394 -  4500979 AAACTTCATCTc-------------------t-ctgtttatttttctca----tttaaacGG--TGCATCATCTTCAAGA--atatatcttcttcttttcatgcGTATCTAGC-TCAATCCGCTACtctctgc---tctttttctttt--------gattttttactcT--CGA----------TGACGGGTCTGCACTAAGAATC--GAGACCAGA------GAAAATAGTGAATCGA---GAGA---------CTTTAAC-TTCTCTT-TGATGT-AAACT--ACTAGAGACT---G--AGTGAGAAGAGAAACAAAGATGTGATTGTTTTGAGGTGACGAGGCTGAAGCCATGGAGCTCATTGACAAGACAGTAGAGCTGCGAGGCAGTCAAGTGCTCAATATGCACTCCTATCATGCAATCATCTGGCAACGAAGAATCATGGCGTTTGCGACACTCCTTGCATGGGTAagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   291555 404 +   386604 GAACgttttcttcccatttctcCCATCATCat-ctgtttatttttcttt-------aaattg--tGCAT----TTCAAGAATATATATATCTAGCC-------------------CAATTCTCTgctctct-------ttcttctatcTTCTTCAGGATTTTTTACTTT--CAT----------TGACGGCCCTGCACTAAGAATT--GAGACCAGA------GAAGATTGGAGATTGA---GAGAGATGACAGGctttaactttttctt-tgatgt-AAAGC--AATAGAGACT---G--CGTAACAAGAGAAACAAAGATGTGATTGTTTTGAGGTGACGAGGCTGAAGCGATGGAGCTCATTGACAAAACGGTCGAGCTGCGTGGCAGTCAAGTGCTCAATATGCACTCCTACCATGCAATCATCTGGCAACGGAGGGTCATGGCCTTTGCAACACTCCTCGCATGGGTAAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2888496 391 +  4147112 TTACTTCATCTc-------------------t-ctgtttatttttctctcaatctgaaatcg--ttttt----ttcaaga--atagaTATCTAACT-------------------CAATTCTCTGCTCTCCGT---tattcttctgcttctttt--gattttttactcT--CAT----------TGGCGAGTCTGCACTAACAATT--GAGAACAGA------TAGAA---GATATTGAAGTGAGAGAAAGCAGACTTTAAC-TTTTCTC-TGATGT-AAAGC--ATCAGAGACT---G--CGTAGCAAGAGAAACAAAGATGTGATTGTTTTGAGGTGACGAGGCTGAAGCGATGGAGCTCATTGACAAGACCGTCGAGCTGCGAGGCAGCCAAGTGCTCAATATGAACTCTTACCATGCAATCATATGGCAACGGAGGGCCATGGCATTCGCAACGCTCCTTGCATGGGTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    7975 407 +   591668 AAGCTTCAAACC-------------------TATCGTTTATCCATTTTG----------ATA--TGCAT----CATAAAA--ACCTTCATTCtcat---tctatttttctttcatcCATCTGCCGCTTT---------TTCACTTCTTTCCCATAAGATTTCTTACTCC--TGTCCGTCTCATTTGACGGGTCTGCACTAAAAATT--GCCATCAGA------GACGATTGCACATCAA---GAGA-TTCAGAAACTTTAAC-TCGTCCC-TGATGT-AAAGCTGACAAAAGATTCGAG--AGCGGC-AGAGAAGCAAAGATGTGATTGTTTTCAGGTGAAGAGGCGGTGCGAATGGAACTCTTGGACAAGACAGTTGAGCTGCGTGGCAGTCAAGTGCTCAATATGCAATCCTATCACGCAATTATCTGGCAGCGTCGATGTATGGCCTTTGCAACATTTCTTGCATGGGTGAGT
i caeJap4.Scaffold17934 I 2368 I 730

a score=778.000000
s ce10.chrX             4629151 244 + 17718866 CTCAATTCATATAAATTATAAATGTAGTTGATGATCTGCTCTTTTGGCCCTCTTGGCTCTCTAGATGTAAAAGAGATCATCAA-AAAT------TAA----AAATTCACATTCTTCA------TCGTCG----TTTCACATTTTTTATGTGCAGTATTCC-A-CAAACGAATA----ATATTCAATTTGAATTCCACACAATACAAGCCGATCTTAGAAGGCGGAAGTAAATAAGATTAGA-------TCGCGT---GTCTGTTTCAATTAGGCCAACTCA
s cb4.chrX              9967450 181 + 21540570 cg-aat-------atttttaaata-atttttctgttattt-----------------tcccAAAG-----------TCACGTaccaat------caa----aaatttgcattttcct------tcgt------tttctcA--TCTAGTATTCAACACTCCTGCCTGGCAAATA----G---TCTATTCTTATTC---------------------------CGGAAGCAAATACAATTAGAATGTTGTTTGTGTGTCGTCGGTTTCAATTAAC-----TCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1559459 190 -  4500979 c------------attttta-------tttattatgcGTT-----------------TCGCGAAG------------CATCta-gaat------taa----aaatttgcattCTTCA------TCATTAC---TCTTTCA--TGCGATAAACAGCATTTGTG-AGAGCGCATG----A---AGAATTCTTATTCTTCAATAGAAAG---AGTCATAGAAGTCGGAAGAAAACACAATTAGA-------TCGCGT---GTCTGTTTTAACTAACACAATTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   291959 191 +   386604 C-----------------TAA------TTGACTAg------------------------tctcaa------------aatttg-aaacgtAAAGCACAAGgaaatttaaattcttca------tcatcatcagttTCCCA--TTCAATACGAAACACTTG-ACAAAACAAATA----G---CTAATTCTTATTCCT-GACAAACAT---CATTATAGAAACCGAAACAAAACCCAATTAGA-------TCGCGT---GCCTTTTTCAATTAGAACAATCCA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2888887 180 +  4147112 C------------TTTGATAA------TTTATTATGCG--------------------CTCCGAG------------TATCTA-GAAT------CAC----AAATTTGCATTCTCCGATTAATTCATCACCATTTTCTCA--TTCAACATGCA--------ACAAAACAAATAAGCCG---CCTATTCTTATTCTT-------CAG---AGTTATAGGAGC-------AAATGCAATTAGA-------TCGCGT---GTCGGTTTCAATTAATCAAATTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    8382 730 +   591668 I

a score=117217.000000
s ce10.chrX             4629395 159 + 17718866 ATTACAGATCGGTGTTATAATGCTGGTGGCGGCGCTGGCGACGACGAGCTGGGCAACGATTGATTTCGTCAACACCGACTACCACCCAATTCACGTAGATTTGGGAGTCTGGGGAGAGTACAGAAAAATTAATACTTTCAAAAAAGTCACAGGTGAGAC
s cb4.chrX              9967631 156 + 21540570 ATTACAGATCGGTGTTGGATTATTGGTAGCGGCGTTGGCCACCACGCACTGGGCTTCCATTGACTTCCATAACAAGGACTATCAGCCAGTTCACGTTGATTTGGGAGTCTGGGGAGAGTATCGTACCGTCAATGACTTCAGGAAGGTTTCAGGTAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1559649 159 -  4500979 ATTACAGATCGGTGTCGTGTTATTGGTAGCCGCGTTGGCGACAACGCAGTGGGCGACGATTGATTTCCTTAACACCGAATACCAACCAGTTCATGTGGATCTGGGGGTCTGGGGAGAATACCGGAcattgaacaatttcaaaaagatcacAGGTTAGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   292150 144 +   386604 ATTACAGATCGGCCTAGGATTGTTGGTTGCGGCGTTGGCAACAACGAACTGGGCGACGATTGATTTCAGCAACACAGACTATCATCCAGTTCACGTGGATCTGGGGGTTTGGGGAGAATACCGAACGGTCAATAACTTCAAGAC---------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889067 144 +  4147112 ATTACAGGGCGGTGTTGTGATGTTGGTGGCGGCGTTGGCAACCACGAGCTGGGCGACGATTGACTTCAGTAACACCGACTATCACCCAGTTCATGTGGATTTGGGGGTCTGGGGAGAGTACCGAACTGTAAACAACTTCAAGAC---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    9112 159 +   591668 ATTTCAGGTTGGCGTAGTGCTATTGATCGCGGGCCTCTCGACGACCAACTGGGCGACAATTGACTTTGTGAACACAGACTACCACATGATCCACGTGGATCTCGGAGTGTGGGGAGAGTACCGAACAGTAAACAACTTCAAAAAGCCCACCGGTAAGAT
i caeJap4.Scaffold17934 I 730 C 0

a score=808.000000
s ce10.chrX             4629554 7 + 17718866 CAGGGGA
s cb4.chrX              9967787 6 + 21540570 -AGTGGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   292294 7 +   386604 TAAGAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889211 7 +  4147112 CAAGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    9271 7 +   591668 GCGGAGA
i caeJap4.Scaffold17934 C 0 I 24
e caeRem4.Crem_Contig0  1559808 0 -  4500979 C

a score=-5324.000000
s ce10.chrX             4629561 25 + 17718866 AAAATATCATAGTAATTTCGAGAAG
s cb4.chrX              9967793 11 + 21540570 AATTTG-------AAGTG-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   292301 25 +   386604 GGTACATAAACATGATTATGATTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889218 23 +  4147112 GGTTTGTTCCCTGGATTGGCAAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9278 24 +   591668 I
e caeRem4.Crem_Contig0  1559808  0 -  4500979 C

a score=280.000000
s ce10.chrX             4629586 7 + 17718866 TACCCAT
s caeSp111.Scaffold622   292326 7 +   386604 TATCTGT
i caeSp111.Scaffold622  C 0 I 3
e caePb3.Scfld02_0      2889241 0 +  4147112 C
e caeJap4.Scaffold17934    9278 24 +   591668 I
e cb4.chrX              9967804 0 + 21540570 C
e caeRem4.Crem_Contig0  1559808 0 -  4500979 C

a score=185.000000
s ce10.chrX             4629593 106 + 17718866 TTTAGGGTTTTTTTTAAAGAAATTCGATC-TAGAACACAGCAGAGAATTGAGTTTTTTGCGAAATTACTTTTTTTTTCAATTGAACAA---CTGAAATCAAAGTTACAAA
s caePb3.Scfld02_0      2889241  99 +  4147112 TTTGGAG-----AACAAGGAAATTTGATAGTAAAAATGCGCTAAGCTTTTGGTTCT------AATTGTCTTGATATCCGCTTGAGCTCTTTCTGACCTCAAATGTACCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9278  24 +   591668 I
e cb4.chrX              9967804   0 + 21540570 C
e caeSp111.Scaffold622   292333   3 +   386604 I
e caeRem4.Crem_Contig0  1559808   0 -  4500979 C

a score=-4935.000000
s ce10.chrX             4629699 86 + 17718866 AAACTAAGCTATCAAATTTTACTCCAGAAAAATAAATTTTGTTAGGTTGCCAAAAAACCGATTAGAATCGCTATAACGAGTAAATT
s caeRem4.Crem_Contig0  1559808 27 -  4500979 ----AGAGTG---------------GGCATTCAAAATATGGGAATG----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2889340 54 +  4147112 GAAGTAAGTT---------------AGAAATAGAAACTTGGATACGT-------------ATCA----CTTCATATCAGGTTACTT
i caePb3.Scfld02_0      C 0 I 72
e caeJap4.Scaffold17934    9278 24 +   591668 I
e cb4.chrX              9967804  0 + 21540570 C
e caeSp111.Scaffold622   292333  3 +   386604 I

a score=-804.000000
s ce10.chrX             4629785 73 + 17718866 CGGGATAGTAACTGGCAACTGCGAGAGACATCGGGATAAATATTACATCACGGCCCATTCGTCATTCCTATTC
s caeRem4.Crem_Contig0  1559835 31 -  4500979 TGTAATAATTGCTGGAAAC------------------------------------------CCTTTTTTATGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2889394 72 +  4147112 I
e caeJap4.Scaffold17934    9278 24 +   591668 I
e cb4.chrX              9967804  0 + 21540570 C
e caeSp111.Scaffold622   292333  3 +   386604 I

a score=-3244.000000
s ce10.chrX             4629858 45 + 17718866 TAAAT----------ACTGTATCAGAAACATTATTTACCTAAAATTTTAATCACC
s caeRem4.Crem_Contig0  1559866 22 -  4500979 TGAAC----------GGttcataacaa-------------aaaat----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2889466 45 +  4147112 TGAACCCAAACTGAGAGATAAAAACAAGCA-----GAAATAAGAT-----TCATC
i caePb3.Scfld02_0      I 72 C 0
e caeJap4.Scaffold17934    9278 24 +   591668 I
e cb4.chrX              9967804  0 + 21540570 C
e caeSp111.Scaffold622   292333  3 +   386604 I

a score=-4849.000000
s ce10.chrX             4629903 19 + 17718866 TTCCAACCAACTTTCCCCT------
s cb4.chrX              9967804 19 + 21540570 ----TTCCAA--taattctggtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1559888  1 -  4500979 ------------------------t
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2889511 18 +  4147112 TTTCACCCAA--TTACCCTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9278 24 +   591668 I
e caeSp111.Scaffold622   292333  3 +   386604 I

a score=54.000000
s ce10.chrX             4629922 1 + 17718866 A
s cb4.chrX              9967823 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1559889 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   292336 1 +   386604 A
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2889529 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9278 24 +   591668 I

a score=80296.000000
s ce10.chrX             4629923 78 + 17718866 TTTCAGTTGAATGGATTCCTCATTTCCCGGCCCCACCAGAGAATATCCTGCGACTTGCGGACACTCATTTGCAACGTA
s cb4.chrX              9967824 78 + 21540570 tttcagtggaatgGATCCCACACTTCCCAGCCCCACCAGAGAATATTCTCCGACTTGCAGACACTGACCTGAAACGTA
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1559890 78 -  4500979 ttccagtTGAATGGATCCCACACTTCCCAGCTCCACCAGAGAACATTCTTCGCCTTGCCGATACCAATTTGAAACGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   292337 78 +   386604 TTTCAGTCGAATGGATCCCTCATTTCCCAGCCCCACCAGAGAATGTTCTCCGATTGGCTGACACTCATTTGAAACGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889530 78 +  4147112 TTTCAGTTGAGTGGATCCCCCACTTCCCAGCTCCACCAGAGAGCGTGCTCCGTTTGGCTGACACCCATTTGAAGCGTa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    9302 78 +   591668 TTTCAGTTGAGTGGATCCCTCATTTCCCAGCTCCACCAGAGAGCATTCTTCGACTTGCAGATACGGATCTGAAACGTA
i caeJap4.Scaffold17934 I 24 C 0

a score=1536.000000
s ce10.chrX             4630001 3 + 17718866 TGT
s caeRem4.Crem_Contig0  1559968 3 -  4500979 AGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   292415 3 +   386604 tgt
i caeSp111.Scaffold622  C 0 I 74
s caePb3.Scfld02_0      2889608 3 +  4147112 agt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    9380 3 +   591668 TGT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9967902 40 + 21540570 I

a score=498.000000
s ce10.chrX             4630004 8 + 17718866 GCTCTCTA
s caeRem4.Crem_Contig0  1559972 8 -  4500979 TATTTTTA
i caeRem4.Crem_Contig0  I 1 I 16
s caePb3.Scfld02_0      2889611 8 +  4147112 catttttg
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold17934    9383 8 +   591668 ATGTTCTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9967902 40 + 21540570 I
e caeSp111.Scaffold622   292418 74 +   386604 I

a score=-5363.000000
s ce10.chrX             4630012 22 + 17718866 GTATTCCAGCTTTTAT--------------------------TTTTTA-------
s caeRem4.Crem_Contig0  1559996 48 -  4500979 AATAGCAGTGTCATGTGTCAAATGCTGAATTTTATAGCAACCTTTTAA-------
i caeRem4.Crem_Contig0  I 16 I 14
s caePb3.Scfld02_0      2889640 22 +  4147112 AACCTCCTTGTCTTAT--------------------------TTTTCA-------
i caePb3.Scfld02_0      I 21 I 43
s caeJap4.Scaffold17934    9391 26 +   591668 ---ATTAGTTCTTTGT--------------------------TGCAAAGCGCTGG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9967902 40 + 21540570 I
e caeSp111.Scaffold622   292418 74 +   386604 I

a score=122867.000000
s ce10.chrX             4630034 173 + 17718866 TTTTCAGATTACTACCGATCACAAGCTTTCATGGGATGCTTCGGAGCAGTCATTCTTTTGTGCACCAACGTTCTAGCTGTTTACACCTTCTATCATCATCGTTACATGTACAAAAGAGCCGTCGCTGCTCTTTATCTTGTTGTTGGTTAGT--------TGAACAATAGCCCATGAATTTC
s cb4.chrX              9967942 177 + 21540570 ttttcagactactATCGCTCGCAAGCGTTCATGGGATGTTTCGGAGCTGTGATTCTGCTTTGCACCAACTGCCTTGCTATTTACACCTTCTATCATCATCGTTATATGTACAAGAGAGCCGTGGCCGCTTTGTATCTTGTTGTTGGTGAGT---GGAACCGAATCATATTAAA-GAATTCT
i cb4.chrX              I 40 I 87
s caeRem4.Crem_Contig0  1560058 177 -  4500979 TGTTCAGACTTCTACCGATCCCAAGCTTTCCTTGGATGTATCGGAGCAGTGCTCCTTCTGTGCACCAACGTTCTGGCCATTTACACTTTCTATCATCATCGTTACATGTACAAGAGAGCCGTAGCTGCCTTATATCTTCTTGTTGGTGAGT--CGGAA--GAAACATGTGGAATGAATTTT
i caeRem4.Crem_Contig0  I 14 I 23
s caeSp111.Scaffold622   292492 151 +   386604 CTTTTAGATTACTATCGCTCGCAAGCTTTCATGGGTTGTTTCGGAGCTGTGATTCTTCTTGGTACCAATTTCCTCGCAATCTACACATTTTATCATCATAGATACATGTACAAAAGAGCAGTGGCAGCTCTTTACCTTGTTGTTGGTGAGT------------------------------
i caeSp111.Scaffold622  I 74 I 23
s caePb3.Scfld02_0      2889705 153 +  4147112 CTTTCAGACTACTACCGCTCTCAAGCCTTCATGGGATGCTTCGGAGCAGTAATCCTTCTCTGCACCAATGTGCTTGCCATCTACACTTTCTACCATCATAGGTACATGTACAAGCGAGCTGTGGCAGCTCTCTATCTTGTTGTTGGtgagttg----------------------------
i caePb3.Scfld02_0      I 43 I 47
s caeJap4.Scaffold17934    9417 173 +   591668 TTTTCAGACTACTACCGGTCACAAGCCTTCATGGGATGCTTCGCCGCACTTCTCCTTCTGATCACTAACTCGCTGGCTATTTACACTTTTTATCATCATCGTTACATGTATAAGAGAGCTGTAGCTGCACTATATATCGTTGACGGTAGGT--------AATAAAACATTGCGGAAGTTTT
i caeJap4.Scaffold17934 C 0 C 0

a score=-5900.000000
s ce10.chrX             4630207 33 + 17718866 AAATAAGAGTGCAAGCGGCTTTCACTTTAG------------TTT
s caeRem4.Crem_Contig0  1560258 44 -  4500979 AGACAATAATA-ATAAGGCTCAcgcttcagaaaaatatgtttttt
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold622   292666  3 +   386604 ------------------------------------------TGT
i caeSp111.Scaffold622  I 23 C 0
s caePb3.Scfld02_0      2889905 43 +  4147112 AAGACACAATG-AACAGagtctgttttcag-aaaatgtgtttttt
i caePb3.Scfld02_0      I 47 C 0
s caeJap4.Scaffold17934    9590 33 +   591668 AGTTGAAATTGAAAccgattttcttttctt------------ttt
i caeJap4.Scaffold17934 C 0 I 178
e cb4.chrX              9968119 87 + 21540570 I

a score=-7448.000000
s ce10.chrX             4630240 41 + 17718866 GGACTACATACATT-------------TTAATTCTTTGCAAGCATAATGAAGCA
s caeRem4.Crem_Contig0  1560302 14 -  4500979 tttcttcattctct----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   292669 10 +   386604 tgtg-----------------------------------------aaaaga---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889948 51 +  4147112 tgtgttcgttttctttatttttcattttcaatttttaaaaaacacaaaaaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9623 178 +   591668 I
e cb4.chrX              9968119 87 + 21540570 I

a score=16638.000000
s ce10.chrX             4630281 130 + 17718866 TAATTTTTTATGTCTCCGAAATTTGAA----------------------------AATGATGATGAATAGTAAATTCATCAACATCTTGTCAGATATGATCTGTCTGTCAAATTTCACGAGCGTCATGTGCTGCTTTTCA---AATCCAAT-AGATAACGAC--
s cb4.chrX              9968206  96 + 21540570 CAACTTTCTATTTC--------TCGAA----------------------------GGTTTTGATGAATAAA--GTTCATCAACGTCTTGTCATTAT--AGACCCTCGTCAAATTTCATGAGTGTCAC--------------------------CGAGACGGC--
i cb4.chrX              I 87 C 0
s caeRem4.Crem_Contig0  1560316 140 -  4500979 cgtttttctaattt--------tcaaaaaaaagaaactactGCAGTCCAACGATGAGGAATGATGAATATT--GTTCATCAACTTCTTGTCAAAATTGAGTTGTCCGTCAACTTTCATGAGCGTcatgtgtttctttttc------------acgGGAAGAA--
i caeRem4.Crem_Contig0  C 0 I 73
s caeSp111.Scaffold622   292679 109 +   386604 aagtttCTT-------------------------------------------------GTCCGTGAATAGT--GTTCATCAACTTCTTGTCAGATTTGAGTAACACGTCAATTTTCATGAGCGTCatgtgtttc-tttttgtgaatcaa---atgaaaagaaac
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2889999 126 +  4147112 aagttttcc--------------tgaG----------------------ACGGTTGGGGACGATGAATAGT--GTTCATCAAATTTCTGTCAGAATTGAGTTGCCCGTCAATTTTCATGAGCGTcatgtgtttcttttttgtaaatcaagagaggaagagacaC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9623 178 +   591668 I

a score=-5322.000000
s ce10.chrX             4630411 45 + 17718866 ----GCTCATG----------AAACACGTTGCGAATGAGTGGACAATA-------GCTGGATTGTA-----
s cb4.chrX              9968302 55 + 21540570 TTCCTTGCAAC----------AAA---ATTTGATAGGAGGGTATGAGGGGGCTCAGC--GGCtgtaaaaa-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   292788 45 +   386604 ----ctTCACA----------AAA---ATGTCATAGAAGTAGACAGAT-------GT--AGTTGTAAcacg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890125 52 +  4147112 ----TTTCAAAGCTTGTCAGTAAA---ATG---AGGGAATAGACAGAT-------AA--AGTTGTAAAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9623 178 +   591668 I
e caeRem4.Crem_Contig0  1560456 73 -  4500979 I

a score=18921.000000
s ce10.chrX             4630456 117 + 17718866 AGATAAAAAA---------GTG----CGGAAGTCGTTTAATGAGCAGTTGGC-ATTGACTCTTGCTC-------TTCAA-AAAAATATAAA------AAACTTC-----------GTTCC--CTTTGAC---ATGGG---TTATTACTTCCTGATAAGTACAAG
s cb4.chrX              9968357 138 + 21540570 agagaaaaaa---------gtactT-GGGAAGTCGTTTAATGAACAGTTGGCAAATGACTTTTGCTCCAGTGCATGCAGAAGTAATAAAAAG-----AAACGTT-----TTGAAAGACAT------AACAGGAGGGAACTTTAATGCTTCCGGATAAGTACgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1560529 137 -  4500979 AGATAAAAAA-------CTGGGACT-AGGATATTGTAGGATGAACAGTTGGC-AGTGACTTCTGCTCAATTGCACGCAG-AGTACTAAAAAG-----AGGCATA-----AACTAAGTTCT--TGTCAACGAGAGG-----TTCTTACTTCCGGATAAGTACGag
i caeRem4.Crem_Contig0  I 73 C 0
s caeSp111.Scaffold622   292833 141 +   386604 ---gaaaaaagagaattcttaacataaaaaaaatgtttaatgAACAGTTGTC-ACCGACTTTTGCTCGATTGATCCTAT-AATACTAAAAAAGTCGTAAACTTC---GGTTCCGAGATAC------------ACGGG---TTTTGACTTCCGGGAAAGTGCGGG
i caeSp111.Scaffold622  C 0 I 96
s caePb3.Scfld02_0      2890177 147 +  4147112 ---TAAGAAA-AGAGTACTTTACAT-AGGAAGTCGTTTAATGAACAGTTGGT-GGTGACTTTTGCTCTGTAGAGc--------actaaaaaagaaataaatttcatagCTTCCGAACTACTTTCCCAACTAGGCGGG---TTCTCACTTCCGGATAAGTACGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9623 178 +   591668 I

a score=1965.000000
s ce10.chrX             4630573 10 + 17718866 CTTGTG-CTTT
s cb4.chrX              9968495 10 + 21540570 -ttgttgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1560666  9 -  4500979 -atgtt-tttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2890324  9 +  4147112 -TTGtt-tttt
i caePb3.Scfld02_0      C 0 I 175
e caeJap4.Scaffold17934    9623 178 +   591668 I
e caeSp111.Scaffold622   292974 96 +   386604 I

a score=-340.000000
s ce10.chrX             4630583 35 + 17718866 --------------------GAAACAAAAACAATTG--TTTCCCG--------AGT---------TGAGGAAAA
s cb4.chrX              9968505 73 + 21540570 ttttttactttttttgcattCGAAGAGAAAGAATAGCATGTCCCATGAGGTTTGGTTTCAAAAGACGAAGGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1560675 59 -  4500979 cttttcattt------cagagaaagaaaagaaaacgcaTTTCCCATGAGGTTTAGT---------cggggaaaa
i caeRem4.Crem_Contig0  C 0 I 143
e caePb3.Scfld02_0      2890333 175 +  4147112 I
e caeJap4.Scaffold17934    9623 178 +   591668 I
e caeSp111.Scaffold622   292974 96 +   386604 I

a score=-6637.000000
s ce10.chrX             4630618 562 + 17718866  
s cb4.chrX              9968578 839 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2890333 175 +  4147112 I
e caeJap4.Scaffold17934    9623 178 +   591668 I
e caeSp111.Scaffold622   292974  96 +   386604 I
e caeRem4.Crem_Contig0  1560734 143 -  4500979 I

a score=-1624.000000
s ce10.chrX             4631180 56 + 17718866 TCATAGAATTCGGGAGCACT--------ATGTTTTGTAGAACCAATATAAATACATTTCTTTCT--
s cb4.chrX              9969417 55 + 21540570 tgactgaa--------aatcggaaaacaaTGCTTT-CAAAAGTAGTAAAAATGA--TTCTATATTT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold622   293070 49 +   386604 TCGCTGAATTCGGGATCATcgagaataaatttttt-------------aaattc--ttcttccc--
i caeSp111.Scaffold622  I 96 C 0
e caePb3.Scfld02_0      2890333 175 +  4147112 I
e caeJap4.Scaffold17934    9623 178 +   591668 I
e caeRem4.Crem_Contig0  1560734 143 -  4500979 I

a score=-3589.000000
s ce10.chrX             4631236 18 + 17718866 -AAAAA-------CCAGTGTTAATCA
s cb4.chrX              9969473 24 + 21540570 -AAGAAAGTTatttaaacgattttt-
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0  1560877 17 -  4500979 -AAGAA-------TCCATGCTATCA-
i caeRem4.Crem_Contig0  I 143 C 0
s caeSp111.Scaffold622   293119 15 +   386604 gagcaa-------tataaaata----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2890333 175 +  4147112 I
e caeJap4.Scaffold17934    9623 178 +   591668 I

a score=76096.000000
s ce10.chrX             4631254 79 + 17718866 TTACAGCCATGTGCATCTTCGGAGCAATCGAAATTCTATCAAGTAGCATCAATGAATGGAACACCGCCGTTGCTCAGGT
s cb4.chrX              9969497 79 + 21540570 ttccagctatGTGCATCTTTGGAGCCATCGAGATTCTCTCCAGCAGTATTAATGAATGGAACACCGCTGTCACTCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1560894 79 -  4500979 TTCCAGTTATGTGCATTTTCGGAGCTATCGAAATCCTCTCAAGCAGCATCAATGAATGGAACACTGCTGTCGCCCGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293134 79 +   386604 ttttagcAATGTGCATCTTTGGAGCAATCGAAATTCTTTCGAGCAGTATTAATGAGTGGAACACAGCTGTCTCACAGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890508 79 +  4147112 TTACAGCGATGTGCATCTTCGGAGCAATTGAGATCCTGTCAAGCAGTATTAATGAGTGGAACACAGCTGTCGCTCAAGT
i caePb3.Scfld02_0      I 175 C 0
s caeJap4.Scaffold17934    9801 79 +   591668 ttACAGCCATGTGCATATTTGCCACCATCGAGATCCTTTCGAGCAGTATCGACGAGTGGAACACGGCGGTTGCAAAGGT
i caeJap4.Scaffold17934 I 178 I 225

a score=-12675.000000
s ce10.chrX             4631333 38 + 17718866 TTGTAACCATTTCTCGGCAGAATGATCAA-----TCTTA--TTAT
s cb4.chrX              9969576 36 + 21540570 TTGT-------ACTTTCCTGAGAATGGAAAAACcctaat--ttct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1560973 42 -  4500979 TCGTGACACAAACATGTCTCTAATCTCAAGA---TTAATGATTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293213 30 +   386604 GACACTTCTGAACAtg--------tttaa-----ttatt--tttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890587 38 +  4147112 AATTAATCAAGCCAAGGTTTTCGTTTcta-----tcaat--tctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    9880 225 +   591668 I

a score=148492.000000
s ce10.chrX             4631371 248 + 17718866 TT-----TTAAAGAATGGCGAGTTCGATTACGAAGCCGGCAAAAAGATGGGTTACTCAACAAGACTTGCTCAAGGAGCCATCGCCACTTCTTTGATCGCATGCCTGGCATTTGCTCTAGGATCACACAAACAAAAAGGAGAGCACGCGGCTACAGCAGAACTGGAAATTGAAGACAGAGAGTATCATATTGGGCGATGA------T--------TGAGATGTCAAT-TGTT---------TAAT-----TCGTACACAT---------T-CCCTATCATT-CTTTGTTATT-TT---
s cb4.chrX              9969612 268 + 21540570 ttt----ttctaggacCGAGAATTTGACTACGAGCAAGCCAAGAAGATGGGATTCTCGACCCGTCTTGCTCAAGGAGCCATTCTTACAAGCATAATTGCCTGTTTGGCATTTGCTTTCGGATCCCACAAACAGAAAGGGGAGCATGCGGCCACCGCAGAGTTGGAGATTGAGGATCGCGAATATCATATCGGACGATAATCGCTTC--------TTTATAATT----TCTTTTCA----ACAAATGATCTCTTTATCTTTCTATATTATCTGCTgc-----tttccgtttt-tt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561015 247 -  4500979 ATT----TTTTAGAACGGAGAATTCGACTATGAAGCTGGAAAGAAGATGGGATACTCCACACGTCTCGCTCAGGGGGCAATTTTCACCAGTTTGGTCGCCTGTCTTGCATTCGCTTTCGGATCACACAAACAAAAGGGAGAGCATGCAGCAACTGCTGAATTGGAGATTGAAGACAGAGAATATCATATCGGACGATAA------C--------TTTATAATGA---TGTTGACA----GTAAA-----CCTCTAACAT---------tcctctgt-----tttc--tttt-tt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293243 260 +   386604 gttcaactTGTAGAACGGTGAATTCGATTACgaagctggaaaaaagatgggATACTCTACGCGACTTGCCCAGGGAGCCATTGTCACTAGTTTGATTGCCTGTCTGGCGTTCGCTTTTGGATCTCACAAACAGAAAGGAGAACATGCAGCAACTGCTGAATTGGAGATCGAGGATAGAGAATATCATATCGGACGATGA------T--------TTCAGAGATAAT-TGGTCATA----ATTAA-----TCTCACACAT---------T-CCTTATCAgcgtttcatttttctt---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890625 264 +  4147112 tt-----tttcagaacggcAACTTTGATTACGAAGCAGGAAAGAAGATGGGATACTCCACGCGACTTGCTCAAGGAGCCATCGCCACTTGCTTGATTGCTTGTGTGGCATTTGCCATGGGATCTCATAAACAGAAAGGAGAACATGCTGCAACGGCAGAATTGGAGATTGAGGATCGGGAGTTCCATATGGGACGATGA------TACcctaaattaaaaaaaaacatttttgca----tttAA-----CCACACACAT---------TCCCTTATCAGTGTTTCGTGTCT-TT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   10105 253 +   591668 -TT----TTACAGAATGGAGAATTTGACTACGAAGCCGGAAAAAAGATGGGGTACTCAACTCGTCTTGCTCAAGCAGCTATTGGCACTTGCATTATTGCCTTTCTGGCATTCGCATTTGGCTCCCACAAACAGAAAGGGGAGCATGCGGCAACAGCTGAGCTGGAAATTGAAGACAGAGAATATCATATGGGACGATGA------T-----------GGAACTTAC-TGTTCATGAACTACTAA-----TTACTCAcat---------t-cctttc-----tttctttttt-ttttt
i caeJap4.Scaffold17934 I 225 I 1206

a score=-13363.000000
s ce10.chrX             4631619 53 + 17718866 CGAAATCTTGGAACTCA----CAACTCTGGA--TAATAGTCTTGCAATATGCGCTTGTT-----------------
s cb4.chrX              9969880 46 + 21540570 ctaaTCTATG--GTTCT----G--CTGGGGT--A---TACTTAACAGTTTTGATTTGTT-----------------
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0  1561262 46 -  4500979 ctaaac------acTCT----GAACTCAAAC--AA-TcaccttatttttctctttggtT-----------------
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold622   293503 70 +   386604 caaaac------ttacTTCTCGAACTCATTTggatttcaagtttttatattcttcGGTTTTCGGTGTTTCTCTCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890889 46 +  4147112 CGGAAC------ACTCT----GAACTCagtc--aattcaattt----tatttttcggttaT--------------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-3278.000000
s ce10.chrX             4631672 22 + 17718866 -TGAAA----CAA--AAAATGTATT--------TTTC-
s caeRem4.Crem_Contig0  1561329 37 -  4500979 -TCAAACTATCAATTGTATTGTGTTGACCatgtttttc
i caeRem4.Crem_Contig0  I 21 I 64
s caeSp111.Scaffold622   293573 25 +   386604 GTCAa-----caa--ttgttgtttt-----tgatttc-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890935 21 +  4147112 GTCAA-----CAA--GGAGTGTAT---------TCTA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e cb4.chrX              9969926 37 + 21540570 I

a score=3.000000
s ce10.chrX             4631694 2 + 17718866 AG
s caeSp111.Scaffold622   293598 2 +   386604 aa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890956 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e cb4.chrX              9969926 37 + 21540570 I
e caeRem4.Crem_Contig0  1561366 64 -  4500979 I

a score=-1376.000000
s ce10.chrX             4631696 14 + 17718866 -----AATTCAAAGTGTTC--
s cb4.chrX              9969963 14 + 21540570 -----AATTCATGGTCTTC--
i cb4.chrX              I 37 I 2
s caeSp111.Scaffold622   293600 21 +   386604 atcacTAATCACACTTTGTTg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890958 21 +  4147112 ACCTCTACTTAACCTTTGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeRem4.Crem_Contig0  1561366 64 -  4500979 I

a score=-31749.000000
s ce10.chrX             4631710  84 + 17718866 --------------AAATTGATT--GAGCTTTTTTG---------------ACTTACACTTTCCACTGAC------------------CAAACTTAA------------TGTGAACTGTTTTT---TTTTCATCATATTTTTTGCAAA-------
s cb4.chrX              9969979  68 + 21540570 --------------GATCtgtttccaaactttcaaa-------------agacTGAATTCTTCCGAGCTT------------------TGGGTCCA-------------CTTGA------------TTTTGATGCGAC-----------------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1561430 100 -  4500979 --------------aacttattt--GAGCTTTGGGACATGATCCGTCTTATCTTTATTTCTCTCGAGATT--TGACCAAAAATGTATGTGAATTTA-------------Cttgatgtat-------ttttcaaaaaat-----------------
i caeRem4.Crem_Contig0  I 64 C 0
s caeSp111.Scaffold622   293621 142 +   386604 ccatcattttcatttctctcttc---tccacCTGCA--TCCTTTTCAATATATTGAAAGTTTCCGAGCTTTGTGACTAAAA-------TGGACTTATCTTTCATACAGATTTGACCAAATGTaaatttttcatcgtttcttct-caattccaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2890979  71 +  4147112 CCATCAAATAC---TATCTGTTT---TACTCTtgca-------------------------------------------------------ttttattctt--------tttgggctatta-----ttctcatattttattc----------aaa
i caePb3.Scfld02_0      C 0 I 130
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-7278.000000
s ce10.chrX             4631794 73 + 17718866 --TAAAATATTT--GG---GAGTTGT---TGTTGCA----ATAGAAAACAGAAAAAACCAG------TTTTTTTTCAGGA-------GTATCTTATTTTA-------
s cb4.chrX              9970047 69 + 21540570 --CAAAATGCTT-------AACTTgt--------------attcaaaa-agaaagaaccTA---------TTAATgaaatgaaat--gt-tttgaatataTTCAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561530 99 -  4500979 --aaaggcTGTTCTGGTAAAACTTGCGAAGGTTGAA----ATTCTGCA-ACAAGGAAATTGAACGACAACctaatagaaaaaaaccagt-tttcaacatattcagtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293763 80 +   386604 taaaataattttctgg---GAATTTTGAAGGTTGAATAAgattcaaaataacaaaaaccTG---------TTTTTCAAGA-------GT-TTTTACTTTA-------
i caeSp111.Scaffold622  C 0 I 36
e caePb3.Scfld02_0      2891050 130 +  4147112 I
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-1011.000000
s ce10.chrX             4631867 20 + 17718866 TTTGTATGCGAGGCAGTAGT
s cb4.chrX              9970116 14 + 21540570 ---GGAAAAAAG---TTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561629 12 -  4500979 ttcgaaaacaaG--------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2891050 130 +  4147112 I
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeSp111.Scaffold622   293843 36 +   386604 I

a score=1958.000000
s ce10.chrX             4631887 30 + 17718866 GACGGTTAGCAGGCAATGGGAAACTACAAA
s cb4.chrX              9970130 27 + 21540570 GAAGGTCAACAGAATAC---AATTtacaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561641 25 -  4500979 --AGGTCAGACGCATTC---AATCTGCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2891180 26 +  4147112 gaaGGTGAAAAGACGAC---AA-CAACAGA
i caePb3.Scfld02_0      I 130 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeSp111.Scaffold622   293843 36 +   386604 I

a score=-6138.000000
s ce10.chrX             4631917 24 + 17718866 ---------AAATCGATAAAAATTAATTACTTA------
s cb4.chrX              9970157 30 + 21540570 agttggaaaaaaccagtttt---gaagaaacaa------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1561666 24 -  4500979 CATCGAATGAGAAC---------GGAGTAATTA------
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold622   293879 26 +   386604 ---------ACACCGATGAGAACAGAGTAACTACT----
i caeSp111.Scaffold622  I 36 C 0
s caePb3.Scfld02_0      2891206 29 +  4147112 ---------AAACCAGTTCTAA-AGAGTATTTTCTCTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-4827.000000
s ce10.chrX             4631941 30 + 17718866 AGGTGCGCGGCAATGT------GCATTGTCTATTTT
s cb4.chrX              9970188 36 + 21540570 aacaacgCAGAGTCAACCATCCACACTGTTTCTTTT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622   293905 11 +   386604 --------------AG------ACAATACTC-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2891235 24 +  4147112 --AGATGGGTGGCCAG------GCACTATTTT----
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeRem4.Crem_Contig0  1561690 22 -  4500979 I

a score=-2954.000000
s ce10.chrX             4631971 11 + 17718866 GATAC----------------------CTTTCC-
s cb4.chrX              9970224 33 + 21540570 -AGTCTGCAGGCAGAGTAATTACCCCACACTGCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   293916  7 +   386604 ---------------------------CTCTTCT
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2891259 73 +  4147112 I
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeRem4.Crem_Contig0  1561690 22 -  4500979 I

a score=-5270.000000
s ce10.chrX             4631982 79 + 17718866 CATTTTCCTGCAATTGGTAAGTTTT-TGAATGTAGAGAAATATTTGTTATGTGTTTGAATTTTAAAAAAAATATACTGTT
s cb4.chrX              9970257 61 + 21540570 TATTTTTTCCCAATGGACAGgtgag-aaaatcaataaagatTAA--TAATA---GTGG----CAGAGCAAG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561712 65 -  4500979 CTTCTACCCGCAATGTATAGGTGAG-AAAATCAATAGAGATTAAT-TAATGTGTGTGG----CAAATATTA---------
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold622   293923 31 +   386604 --------CATCATGTACAggtgagaaaaatcaatacgG-----------------------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2891259 73 +  4147112 I
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-4927.000000
s ce10.chrX             4632061 24 + 17718866 TCAAAATCATTAACTTTGAAT---TTT
s cb4.chrX              9970318 14 + 21540570 -------CGAGAGCGTTTTTC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561777 14 -  4500979 -------CGAGAgcatttttt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293954 15 +   386604 -----ATTAATAACGCTGTG-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2891332 24 +  4147112 ccaaaatcaatAACGATAAATTAC---
i caePb3.Scfld02_0      I 73 I 43
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-7974.000000
s ce10.chrX             4632085 42 + 17718866 -------TTTTGCAATTCCTAAGTTGTTTTATAGTGTTACATACTA--CTA
s cb4.chrX              9970332 46 + 21540570 CTCCATAATCCAAAACTATTTA--CCTGTTATTTCGTTCAGTGATA--CG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561791 45 -  4500979 gtctgtttgtgACCAAAGTTGA--TCGGTAAT---GTTCGAAaataatca-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   293969 27 +   386604 -------TGCAGAAAAAACTGAGGCGAGTtat------------ta-----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2891356 43 +  4147112 I
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-9946.000000
s ce10.chrX             4632127 25 + 17718866 ---------------TTTAAAACATTTTGCTATAAAAAAT-
s cb4.chrX              9970378 41 + 21540570 TTGATAAAATGAATTTTGTAGCCAtctatttctagaaaaaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0  1561836 28 -  4500979 ttga-aaaatgaattttgtaGC------------GAAAGGT
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold622   293996 11 +   386604 ---------------ttttaaatatt---------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2891399 21 +  4147112 ---CTTAGGTCAGTTCTCTTAACA-----------------
i caePb3.Scfld02_0      I 43 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=-8310.000000
s ce10.chrX             4632152 47 + 17718866 CAGCTACAACTCATCAAGTTATAGCCAAAATACATTTTGTGTCGTGA-------------------
s cb4.chrX              9970420  3 + 21540570 ---------------------------------------caG------------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622   294007 51 +   386604 tagTTA----TCGTTTAatcgttg-aaaaatgaatcttgTAG----------TCTATAAAACGTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2891420 59 +  4147112 -AACTA----TC-TCTAATCATTA-GAAACTCTATTTTGTAGCGTCAGAAAATCTATAAAAAGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I
e caeRem4.Crem_Contig0  1561864 21 -  4500979 I

a score=11633.000000
s ce10.chrX             4632199 45 + 17718866 TTTAAATCAA---CAAAAAATAATCTTAAAACATAGTTCAAATGACA-A
s cb4.chrX              9970423 44 + 21540570 -GTAAATAGA---AAACAGTTATCTTTAGCGTAGAGTTCATACGAAC-A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1561885 46 -  4500979 TTTAAATCAACAGAAACAGTTATC--TAGAGAAGAGTTCATACGAAC-A
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold622   294058 43 +   386604 TTTAAATCAA---CAAAATTTA---ACGGAAAAGAGTTCATACGACCAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2891479 44 +  4147112 TTTAAACCAA---CAAGAATTatc-aagaaaaagagttcaTACGACC-A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   10358 1206 +   591668 I

a score=146166.000000
s ce10.chrX             4632244 207 + 17718866 AAACCTTGATTGATTTTTC----TGCCCCAACTGATAG-CATTATC-TTCCCGCCATTCATGCACGCTGTTTCGT----------------TTTGGTTATTTTATGAATTC---------ATTTTTCAGA---------TAGCAAA-ATGGGCTTTTGGACCGACGTGCGAGATCGGATCAAAAGCTGGAAAATAACAGTGGAACCGTTAATGTTTGTTTTGGCAGCATGTAATACAGCTGTGTGAGT
s cb4.chrX              9970467 224 + 21540570 AAACCTTGATTGACTTTTTCACCCT-GCCAACTGATAgtc-ttatcatttttcttgtctttGCACGTTTCCTTATG---------------CTTccttttttaatgaattc-------catattttcagagagaaaaacaGGCAAACATGGGTTTTTGGACAGATGTATGGGATCGAAttaaaagttggaaaattacAGTGGAACCATTAATGTTTGTATTGGCAGCGTGTAATACAGCAGTGTAAGC
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0  1561931 207 -  4500979 AAACcttgattgatttttt----ct-tccaacTGATAA-C-TTATC-TTTCCGCCATTTATGCACGTTTCATTGT---------------------TTCTCTTATaaattt---------tctttccaga---aaaaccAAACAAACATGGGATTTTGGACTGATGTACGAGATCGGatcaaaagttggaaaattacAGTGGAACCGTTGATGTTCATATTGGCAGCATGCAACACCGCAGTGTGAGT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   294101 209 +   386604 AAACcttgattgatttttt----ct-cttaactGATAG-C-TTATC-TTTGTGTCATTCATGCACGTTGCGTTGT---------------------TTCCTATCAAATATG-------ctttatttcaga---ataggATAGCAAACATGGGATTTTGGACCGATGTGCGGGATCGGATCAAGAGTTGGCAAATTACAGTGGAACCATTGATGTTCGTGTTGGCAGCATGTAACACAGCAGTGTGAGT
i caeSp111.Scaffold622  C 0 I 191
s caePb3.Scfld02_0      2891523 210 +  4147112 AAACcttgattgatttttc----ctcCCTAACTGATAC-C-TTATC-ATTCCGCCATTCATGCACGTTTCGTTGT---------------------TTCTCTTGACAAATG-------TTTCGTTTCAGA---ATAAATCAGCAAACATGGGGTTTTGGACTGATGTACGAGATCGGatcaaaagttggaaaatcaCGGTGGAACCGTTGATGTTTGTATTAGCAGCATGTAATACAGCAGTGTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   11564 223 +   591668 AAACtttgattgatttttt----tc----tgctgATACGC-TTATC-Atttttgcctttatgcacgtttt-tcgtgtttccctatcatcacttttatttttttccgagtttttttgtttttcatttcaga--------------AACATGGGTTTTTGGACGGATGTGCTGGATCGGATAAAAAGTTGGCAAATTACGATAGAGCCTTTGATGTTTGTCCTGGCAGCATGTAATACTGCAGTGTAAGT
i caeJap4.Scaffold17934 I 1206 C 0

a score=68.000000
s ce10.chrX             4632451 3 + 17718866 GTT
s caeJap4.Scaffold17934   11787 3 +   591668 TTT
i caeJap4.Scaffold17934 C 0 I 53
e caePb3.Scfld02_0      2891733 0 +  4147112 C
e cb4.chrX              9970691 11 + 21540570 I
e caeSp111.Scaffold622   294310 191 +   386604 I
e caeRem4.Crem_Contig0  1562138 2 -  4500979 I

a score=-8190.000000
s ce10.chrX             4632454 164 + 17718866 TTGTCTTGTTGACAAGAAACATGTATATTGAAAGTAATCAAAAAAATCA--TGTTTCAGAAAATTTTC---GAGAATGTCAAAAAGAAACTTCACTGACCTAACAAAAACATATCCTGTAAAGTTTTTAAAAAAAG---TTCAAACATTTGTCAAAATTTTAATTTAACGTT
s caeRem4.Crem_Contig0  1562140  58 -  4500979 ------------------------------------ACCAg----------tattc----ttattttc---caaaat-tgataT-------------------------------CTATAAGTTTATCTGTTATCT---CTCAAAA--------------------------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0      2891733 150 +  4147112 ----CTCATTGATATACattaacggaaaaaaaatccaccaaaaaaactgattattc----aacttttcatttgaaat-tcaaatagaatgtgtactg-------gaaaaaatgtacggtaaatattttggaaatcttaattcagaga------aaaaagacaaatcaaCGTT
i caePb3.Scfld02_0      C 0 I 190
e caeJap4.Scaffold17934   11790  53 +   591668 I
e cb4.chrX              9970691  11 + 21540570 I
e caeSp111.Scaffold622   294310 191 +   386604 I

a score=-2509.000000
s ce10.chrX             4632618 202 + 17718866 TCTCTACTCAATATTAGTGAATTTTAGGTACAACGTTTTGAAAAACTGCTTTTTAGTGTCCTAAAAACCCCTCACAAGCTCACAAGAACAGGAAAAGCAGCCCAACGGAGAGTGAAATCGAAAAACAATATTTCAAAACGTTTATAAAACTATGATATTTGAACATTTTAGCAATGTATGCGTATATTATTTATAAAAAGTT
s caeRem4.Crem_Contig0  1562198  95 -  4500979 ----taccgaaaattga----------------------aaataactgttgttga-------aaatggccctta-----------------gaaaa------------------------aaaattcatgttctgcaa------------------atttg----ttttaaaattttatgaattcacTGTT-----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2891883 190 +  4147112 I
e caeJap4.Scaffold17934   11790  53 +   591668 I
e cb4.chrX              9970691  11 + 21540570 I
e caeSp111.Scaffold622   294310 191 +   386604 I

a score=-9718.000000
s ce10.chrX             4632820 137 + 17718866 TTCCACTGACTAT------------------------------AAAAATTAGTATAATGTACCAAAATATTTTTTGCAACTACATAGTATAACGCCAAAGTTTTCAACATTTATAAGTAAGTAGTTGAAGACTTTAAAA---AAACTTTTCTGATTACTAC-AAAACTAAC
s caeRem4.Crem_Contig0  1562293  36 -  4500979 ----------------------------------------------------------------------------------------CTAAT----------------------------------AAGATCAGTAAC---AAAATGATGTGATTCTCAC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2892073 169 +  4147112 TTCCACCGGTCATTTTATGAAACTAAAACTGAGTGCTTGTCACagaagttggttttttgaatctctgcattttcaaattttattttccctaatccataatCCCTCCACATAATTTCG--ACTGGTCAAAGAATATTACctcgaaaaccatttttttatcAAGTGATCTAAC
i caePb3.Scfld02_0      I 190 C 0
e caeJap4.Scaffold17934   11790  53 +   591668 I
e cb4.chrX              9970691  11 + 21540570 I
e caeSp111.Scaffold622   294310 191 +   386604 I

a score=-6008.000000
s ce10.chrX             4632957 30 + 17718866 AATTTACAAAACTAAAATGCATTAAATTCG------------
s cb4.chrX              9970702 22 + 21540570 --------AACTCACCAAACACcaatatca------------
i cb4.chrX              I 11 I 2
s caeRem4.Crem_Contig0  1562329 14 -  4500979 ----------------AATTATGCGTTTCC------------
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0      2892242 32 +  4147112 ----------ATCAGTAACAATACATGTGTgcacaaaattca
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17934   11790 53 +   591668 I
e caeSp111.Scaffold622   294310 191 +   386604 I

a score=408267.000000
s ce10.chrX             4632987 510 + 17718866  
s cb4.chrX              9970726 499 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0  1562344 515 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   294501 506 +   386604  
i caeSp111.Scaffold622  I 191 C 0
s caePb3.Scfld02_0      2892277 520 +  4147112  
i caePb3.Scfld02_0      I 3 I 34
s caeJap4.Scaffold17934   11843 512 +   591668  
i caeJap4.Scaffold17934 I 53 I 38

a score=477.000000
s ce10.chrX             4633497 2 + 17718866 TT
s cb4.chrX              9971225 2 + 21540570 TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1562859 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   295007 2 +   386604 TT
i caeSp111.Scaffold622  C 0 I 15
e caePb3.Scfld02_0      2892797 34 +  4147112 I
e caeJap4.Scaffold17934   12355 38 +   591668 I

a score=-893.000000
s ce10.chrX             4633499 3 + 17718866 TTT
s cb4.chrX              9971227 1 + 21540570 A--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1562861 3 -  4500979 TTT
i caeRem4.Crem_Contig0  C 0 I 38
e caePb3.Scfld02_0      2892797 34 +  4147112 I
e caeJap4.Scaffold17934   12355 38 +   591668 I
e caeSp111.Scaffold622   295009 15 +   386604 I

a score=-236.000000
s ce10.chrX             4633502 18 + 17718866 AAGA-----------------AAACTTGAAAATTC
s cb4.chrX              9971228 35 + 21540570 AAGGGTTCGCTTGACTATATTAAAGTAGAATATTG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2892797 34 +  4147112 I
e caeJap4.Scaffold17934   12355 38 +   591668 I
e caeSp111.Scaffold622   295009 15 +   386604 I
e caeRem4.Crem_Contig0  1562864 38 -  4500979 I

a score=0.000000
s ce10.chrX             4633520 502 + 17718866 GAGATCTAAAAAAATGATTACACAAAAAAATAATGACTTTTATTATTTATTTTTAAGCACGAAACACGCAATAATTCTCTAAAATATTCCAGTAATAACTTTAATAATTAAATTTAATTGGAAAACGTATCAAAACGGCGTTTAAAAATTTTTGAAAAAACATAAACTTTTGAATTATGGATGTATAGACTTTTTAAGCTCACGTATATTTTAACACAATTCCAGTGACGCTACACCTAACATCCCtaaaatataaaattatataaatattaaatacataattatataaaCTGAAAAGCCCTCTAAAAATAAGTTGACCGTGCATTTTTCGAGAATCTGCGTTTCTTTATGATCTGCTACTTTAAAACTTTAGAATACTAGTCCCTAGTTTGAATAAGATTGTTCAAGCAAAAACTACAAAATGTTGGAAAAAAAAACAACGTTGTTTGAAAATGCCCAAATTCGGTAGACTCCAATTTAACAAATTCTCCAGTTTTCTAAC
e caePb3.Scfld02_0      2892797  34 +  4147112 I
e caeJap4.Scaffold17934   12355  38 +   591668 I
e cb4.chrX              9971263   0 + 21540570 C
e caeSp111.Scaffold622   295009  15 +   386604 I
e caeRem4.Crem_Contig0  1562864  38 -  4500979 I

a score=678.000000
s ce10.chrX             4634022 16 + 17718866 TCAATAACTAATCCTA
s caeSp111.Scaffold622   295024 16 +   386604 tcaatgaataacTGTA
i caeSp111.Scaffold622  I 15 C 0
e caePb3.Scfld02_0      2892797 34 +  4147112 I
e caeJap4.Scaffold17934   12355 38 +   591668 I
e cb4.chrX              9971263  0 + 21540570 C
e caeRem4.Crem_Contig0  1562864 38 -  4500979 I

a score=1820.000000
s ce10.chrX             4634038 2 + 17718866 TT
s caeRem4.Crem_Contig0  1562902 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622   295040 2 +   386604 TT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2892831 2 +  4147112 TT
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17934   12393 2 +   591668 TT
i caeJap4.Scaffold17934 I 38 C 0
e cb4.chrX              9971263 0 + 21540570 C

a score=116436.000000
s ce10.chrX             4634040 127 + 17718866 CAGCTGTCATATCGTATGGTCGTAGTGTCAATTATCTTTAGTTTGGGATCGTTTGTTGCTTCGAGATTTGTAAAAGATTTGGTAAAGTGGACTTCAAAGCCAACAGTCATGATTATTGCAGAAGGT------T
s cb4.chrX              9971263 127 + 21540570 CAGCTATCTTATCGGATGGTTGTTGTGTCGATTCTGTTCAGTTTGGGGTCATTTGTGGCGTCTCGATTTGTAAAAGACCTGATTAAATGGACTTCAAAGCCATCAGTGATGATAATTGCAGAAGGT------T
i cb4.chrX              C 0 I 450
s caeRem4.Crem_Contig0  1562904 127 -  4500979 TAGTTATCTTATCGAATGGTCGTTGTGTCGATTTTATTCAGTTTGGGCTCATTTGTTGCGTCTCGATTTGTCAAAGATTTGGTAAAATGGACTTCGAAGCCCACTGTCATGATTATTGCGGAAGGT------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   295042 127 +   386604 CAGCTATCTTATCGAATGGTTGTGGTGTCCATTTTGTTCAGTTTGGGATCATTTGTAGCGTCTCGATTTGTGAAAGATTTGGTGAAATGGACATCCAAACCTACTGTCGTGATAATAGCTGAAGGT------T
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0      2892833 133 +  4147112 TAGTTATCATATCGAATGGTTGTAGTGTCTATTTTGTTCAGTTTGGGATCATTTGTTGCATCGAGATTTGTGAAGGATTTGGTCAGGTGGACTTCGAAGCCAACAGTTATGATTATTGCTGAAGGTATGCTAT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   12395 127 +   591668 TAGTTATCCTATCGCATGGTTGTGGTGTCAATTTTGTTCAGCTTGGGGTCTTTCGTGTCTTCGCGGTTTATAAAAGATTTAGTGCAATGGACCTCTAAACCAACGGTCATGCTGATTGCCGAGGGt------t
i caeJap4.Scaffold17934 C 0 I 36

a score=-4825.000000
s ce10.chrX             4634167 22 + 17718866 -------------TTGCAAACATT-------ATAAATGAAAC
s caeRem4.Crem_Contig0  1563031 24 -  4500979 TGTTTTCAATACCTccacattttc------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   295171 18 +   386604 -------------TCCCAACTGTTAGTATGA-----------
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0      2892968 11 +  4147112 -------------GTCCGATTGTT------------------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17934   12522 36 +   591668 I
e cb4.chrX              9971390 450 + 21540570 I

a score=-1829.000000
s ce10.chrX             4634189 12 + 17718866 -AAAAACCTAAAA
s cb4.chrX              9971840 10 + 21540570 AAAGTTCC---AA
i cb4.chrX              I 450 C 0
s caeRem4.Crem_Contig0  1563056  8 -  4500979 aaaacgtC-----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   295189 12 +   386604 -AAActcataata
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2892979 12 +  4147112 -AAACTTATTTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   12522 36 +   591668 I

a score=59835.000000
s ce10.chrX             4634201 201 + 17718866 -TTGATTCAGGTGGATATCTACTTACATTTCTTGTGTCCTTATTAATTTTGGACCAAAAGAAACCTAAGACTAAAAACTGTTTATTAAAAGAAGATGAATCCATTGTAACTGTAGAAGGTTCGGAA---------AATCAAAGTCTTGCCTCACTCCCAAA-----CAGT-ACCCAAGAAAATAAGTTGTTAGTTC--------ATATCATGTGATTAAA----CCACC-----------------------------------------
s cb4.chrX              9971850 206 + 21540570 -TATTTTTAGGAGGATATCTACTAACTTTCATAATCTCACTTTTCGTTTTGGAGCAGAAGAAACCAAAATCTAAAAGCAGTTTGCTCAAGGAAGATGAAACCATTTCCACCATTGAGAATGCCGAG---------AATTCAAGCCTTGCATTCATTCCAAA---TCCTGTTGTCGAAGAAAAACAGTGAGTCAG----------AACTGTTTCCTTGAAATCTTTAACT-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1563064 194 -  4500979 --ATTTGCAGGAGGATACTTGTTAACTTTTCTGGTATCTCTGTTGGTTTTAGAACAGAAGAAACCAGTCCCAAAAGATAGTTTGCTGAAAGAAAACGATACCATATCTACAATTGAGAGTGCTGAA---------AACCAGAGTCTTGCCTCTGCCCCAAT---ACCAATTGTGACGGAGAAACAGTAAGCTGC----------AAACGCTAC-----------TAACT-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   295201 200 +   386604 -ttttttcaggcgGATATCTTCTGACATTTATTGTTACCTTATTTGTATTAGAACAAAAGAAGCCGAAGTCAAGAAGTAGTTTactcaaagaagaagacactaTTTCCACCGTcgaaaatgcagaa---------aatcAGAGTTTGGCATCGGTCCCCAACAACCCAGTCGTTGAAGAGAACACGTGAGCTATTC--------GTTTTTTGC-----------TTCCA-----------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2892991 215 +  4147112 -TGTTTCCAGGAGGATATCTGCTAACATTTATCGTATCATTGTTTGTTTTGGatcagaaaaaaccaaaatcgaAAGACAGTTTACTCAAAGAAGACGAAACAATTTGGTCTGTCGAGAATGCTGAAAACCCTGAGAATCGAAGTTTGGCATCCATTCCTAATACTCCAGTTGTAGAGGAAAAAACGTAA--TATTCCATGTCTAATGTCTTAC-----------TTTTT-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   12558 222 +   591668 ttgatttcaGGAGTGTATTTGCTTACTTTCCTGGTGTCCTTATTTGTACTAGAGcagaaaaagccaaaaaagaaagatggaCTGATAAAAGAAGATGAAGAC---------GTTGCGAGCCTTGAG---------AATCAGGAGTTGACGACGGTTCCAAA---------TACCGAAGAAAATCTGTGAGTTtt----------aatctttat-----------ttttttttaaatttacaagcctgcagcttgtggcgactaagtcgcc
i caeJap4.Scaffold17934 I 36 I 185

a score=124392.000000
s ce10.chrX             4634402 181 + 17718866 ATAAATCCAACT---------------------------------------TTTCCAGATCAGTTTTTGAAATCATAAAAACTTCATTCGTAGCAATCTATGACGCTGCGAAAATATTCCTACAACCAAGAGCAGGCCATCGAAGATTATTCCTATATCTTTGCTTTGCCGCCAATTTTCTCGATCAATTTGTATGGGGTGAAGAGAAAGGTACAA-----TTTT--------------------------------------------
s cb4.chrX              9972056 196 + 21540570 TTGTACTCAATTTCC-----------------------------TTAATGAATTTCAGATCTGTCcttgaaattatcaaaatttcttttgtttcCCTCTACGACGCTGCTAAGATCTTCGTTCTCCCTCGAGCCGCCCACCGCCGACTGTTCTTGTATCTTTGTTTTGCCGCCAACTTCCTGGACCAGTTTGTAtggggagaagaaaaaggtacaattgtttttc--------------------------------------------
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0  1563258 181 -  4500979 ATGTATCCAACC---------------------------------------ATTCCAGATCTGTAAtagaaataatcaaaatttccttCGTTTCCCTCTACGATGCCGCCAAGATTTTTGTGCTCCCCAGAGCTGGACACCGTCGACTGTTCCTTTATCTTTGTTTTGCTGCCAACTTCCTGGATCAGTTTGTAtggggagaagaaaaaggtacAA-----TTTC--------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold622   295401 188 +   386604 ACATTCtcaatg--------------------------------aaattaaaattcaggTCGATCCTCGAAATCATCAAGATTTCATTCGTTTCTCTCTACGATGCTGCTAAAATTTTTATGCTCCCTCGAGCTGGACACCGAAGATTATTCCTCTACCTCTGTTTTGCTGCCAATTTCCTGGATCAATTCGTTtggggagaagagaaaggtaCAA-----TTTT--------------------------------------------
i caeSp111.Scaffold622  C 0 I 59
s caePb3.Scfld02_0      2893206 181 +  4147112 ACGAACACA---------------------------------------TTCATTCCAGGTCTGTGttagaaatcatcaaaatatcGTTTGTTTCCCTCTATGACGCTGCCAAAATCTTTGTCCTCCCCCGTGCTGGTCATCGGAGATTATTCCTTTACCTCTGTTTTGCCGCTAATTTCCTGGATCAATTTGTATGGGGAGAAGAGAAAGGTACAA-----TTTT--------------------------------------------
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold17934   12965 264 +   591668 actaatctaaaattttctatataagaaagattgtttTAAATGAACAATTTTCTTGCAGAACAGTTCtggaaatcattaaaatatCATTTGTTTCCCTGTACGATTCTGCTAAAATCTTCATGTTTCCTCGAGAAGGACACCGAAGGTTATTCCTCTGGCTTTGTTTTGCGGCCAATTTTTTGGATCAGTTTGTATGGGGAGAAGAAAAAGGTGAAG-----TTTGGAAAttagtgtcaaaaatactgCTAGACATGCGTgaaaaaacat
i caeJap4.Scaffold17934 I 185 C 0

a score=-13042.000000
s ce10.chrX             4634583 34 + 17718866 ----------------------------------GCCAAAATGCGACG----CATTTCCCTCGATG----AATTAT----
s cb4.chrX              9972270 28 + 21540570 ----------------------------------------gaacaaaa----aattatttcccCAA----TGCTAT----
i cb4.chrX              I 18 I 17
s caeRem4.Crem_Contig0  1563460 30 -  4500979 ----------------------------------tataaaaaacaaga----aattcctATGAAAA--------AT----
i caeRem4.Crem_Contig0  I 21 I 17
s caePb3.Scfld02_0      2893417 33 +  4147112 ----------------------------------tctggaaaataata----agaTGCGTCCCTTG-----GGTAT----
i caePb3.Scfld02_0      I 30 I 18
s caeJap4.Scaffold17934   13229 80 +   591668 gcaaaaatttGTCAGTTTTACctacatttctatgaataaaaaatgaaatgagaaTGTCACTTGcaatcaaatttattttt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622   295589 59 +   386604 I

a score=-17211.000000
s ce10.chrX             4634617  69 + 17718866 -------------------ACTTTAGA-------------------------------ATATTGAATCTTG-----AACCCTGAATC-TA-----GAAATGAAATCATTT------------------------------------GAAAATTTGTTCGGGAAAC---T
s cb4.chrX              9972315  79 + 21540570 -------------------AAGT-----------------------------------ATGGTGTTATTGA-----ACCCTCACATCATC---------TGAAATCCAGT--------GTCA----GCTGAGAG---------AAGAAAGATTCGTTC-GGACTCGTGT
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0  1563507  96 -  4500979 -------------------ATATCATA-------------------------------ATGATTCTAGCTG-----AGTTTTATACCCTC-----CAAGTGAAATCATTT-----GTAGTCA----GCTGAGAGCTCTGCTCCGTAGAAGATTTGTTC-GGAAAC---T
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold622   295648  87 +   386604 -------------------ATATTGTG-------------------------------ATGATGAGATTTG-----GGTTTTGAACCTTC-----GTAGTGAAATCAT-------------------CTGAGAGCTTTTCGAGGGAGAAGATTCGTTCGGGAAAC---T
i caeSp111.Scaffold622  I 59 C 0
s caePb3.Scfld02_0      2893468  90 +  4147112 -------------------aaaataag-------------------------------gtaatgagttttg-----aattttggaccCTC-----AATATGAAATCATCC-----GTAGTCA----GCTGAGAGCTT------GATGAAGATTCGTTC-GGAAAT---T
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17934   13309 165 +   591668 tctttggaaACTTTCCACTAACTCGTGCATTATTCATGAAAagctgtcagtcggccacgtGTTGtttctcggccgcggccatgtgCTCTCACGTAGAGACAAATATATTTTCTCCTTAATAaagttgttgaaaaaaaagttatcgtAAAAGTTTtacg-ataaat---t
i caeJap4.Scaffold17934 C 0 I 146

a score=54519.000000
s ce10.chrX             4634686 129 + 17718866 GCGTGGGC-GAGATGTTTCAATCTCTTTCCGGTCTATCATGGGTCGATTAT-------TACTTCAAAACGAAGCCAATTTCTATGTTGTTTTCTTGAA----CGCACGGGGAGTT---TAC-GAAATTAGGTA---------------TTAAGCT-CACGT
s cb4.chrX              9972394 134 + 21540570 GCGTGGGCAAAGTTATTTTGATTCCTTTCCGGTCGTTTACTGCTCCGTAACA----------TCCATACGAAGCTAATTTTCATGTCG--TGCTTGAAACTAACGTTGATAGACATATAATGAAAATAGTTCT---------------GATAAACACACGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1563603 139 -  4500979 GCGTGGGC-AAGTTATTTCGATCTCTTTCCGGCCTCTCACATCTTCGCGACATTC---TGTCTTCAAACGAAGCTAATTTTCATGTTGTTTGTTTGAAGTTCTGACTGATGGGTA---GACTAAAATTGGTCA---------------AGAAACTGCACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   295735 138 +   386604 GCGTAGGC-GAGTTATTTCGATCTCTTTCCGGCCGTTTACTGGTCGGTGACATTC---CATTTGCAAACGAAgctaattttcattttgtttgcTTGAAGCGCATTTTGATGAGCT---AACCGAAATTTGTTC---------------GGAATCT-CACGT
i caeSp111.Scaffold622  C 0 I 14
s caePb3.Scfld02_0      2893558 138 +  4147112 GCGTGGGC-AAGTTATTTCGATCTCTTTCCGGCAGTTTACTGCTCGGTGACATTC---CTTCTTCAAACGAAGCTAATTTTCATGTTGTTTGCTTGAAGCTCAACTTGATGGACT---GACCGAAATTAATTC---------------GAAAACT-CACGT
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17934   13620 152 +   591668 GCGTGGGC-GTTCTATTTTGATTTC--CACATCTTCTCATGAGCTAATTTCAGTTTAATGCTTGCAAACGAAGTTAATTCCGATGTTGTTAGCCTGAAGCACAAAC--ATCGGCT---GACTGAAAATTAGCCACCGACCGACCCACTGGAAGTT-CACGt
i caeJap4.Scaffold17934 I 146 C 0

a score=-4720.000000
s ce10.chrX             4634815 21 + 17718866 ----CAAATGTAATTTAATAA---TTTA
s cb4.chrX              9972528 17 + 21540570 ----CGGATAGGAAATGATGG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1563742 16 -  4500979 ----C-Gataaaaacttgtaa-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2893711 23 +  4147112 ----C-GATGAAAACATGTAGACGTCTA
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17934   13772 21 +   591668 catgcaaaaataaatattgga-------
i caeJap4.Scaffold17934 C 0 I 34
e caeSp111.Scaffold622   295873 14 +   386604 I

a score=-9.000000
s ce10.chrX             4634836 8 + 17718866 CTGTATAT
s caePb3.Scfld02_0      2893734 8 +  4147112 CGATTTCT
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17934   13793 34 +   591668 I
e cb4.chrX              9972545 0 + 21540570 C
e caeSp111.Scaffold622   295873 14 +   386604 I
e caeRem4.Crem_Contig0  1563758 0 -  4500979 C

a score=-12476.000000
s ce10.chrX             4634844 51 + 17718866 ----AACACAAATTTTTATTTTTAGCTGTTTTAGGAAAAA--------CACT----AACTTTCTGAT
s cb4.chrX              9972545 31 + 21540570 AAATCAcg------------------------tgtttgaa--------aattctgggaattt----t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1563758 27 -  4500979 aatcaaaa------------------------agcgcaaa--------aacc----aaaTAT----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   295887 18 +   386604 ----AACA------------------------Cggatgaa-----------------atgtt----t
i caeSp111.Scaffold622  I 14 C 0
s caePb3.Scfld02_0      2893755 31 +  4147112 ----AATA------------------------ATGATGAAAGAAACAAAGAT----GATGAT----A
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   13793 34 +   591668 I

a score=225813.000000
s ce10.chrX             4634895 359 + 17718866 TTTCAGGTCTTCTGGGCACCTACGTGAGATTACCCCCTTTCACGTGGGACACGTCCACATATGCTGACTACAAATCCTGGCGACCAATAGTTCGTTCGTAATTTTCCA-ACAAAAATTCCTCAGCTTT------TATTAAA----------TTTATTTTCAGAAATTGTGGGTATGGCTGTTGGTATGTTATTTTTCAAACGAATCTTTCATTTCCGCGACACCTTCATAATCTGCCTTGCCATTTTGAGCATGACCGGATGTGTGCTCATGATTGGATTGGCTCAGGTCAGTCTTTGCTACTTTTTTT---------------------------TTGTTGAAGTGAT--------AATCCG-CTTAGAATATAGGATTAGGA-----AAAGTC------ACAGGAT-------ATGTGACCGGATGTT
s cb4.chrX              9972576 367 + 21540570 tTACAGGTCTTCTGGGCACGTATGTGCGCCTGCCACCATTCAAATGGGATACCAACACTTATGCTGATTACAAATCGTGGAGGCCAATAGTCCGTTAG-----TGAAA-GAA-------GCCTTTTGT------AACCAATCTGAACATTCTTTACATTTAGAAATTGTCGGAATGACTGTTGGAATGTTGTTTTTCAAGCGCATCTGTCATTTCCGCGACACATTTATTATTTCCCTCGCTATTCTGAGCATGGCCGGTTGTGTGCTCATGATTGGATTGGCACAGGTTAGCTTTTgcccttttttctcttg------------------------attCGAATCAACCCCACGCAAATCCG-TATTCATGACAAGATTTGTG------AAAGCA-----ACCGGAC-------GTGTGACCGGATGC-
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0  1563785 401 -  4500979 TTTCAGGACTCTTGGGTACATATGTAAGATTACCTCCATTCAAGTGGGATACTAACACTTATGCAGACTACAAATCATGGAGACCCATCGTCCGTTAG-----TTCCATTCT-------GTCCCCTGA------CACTCAAGtgaagaat-tttattttcagaaattgtggGTATGGCTGTTGgaatgttgtttttcaaacGCATTTGTCATTTCCGTGACACCTTCATAATCTCTCTCGCCATTTTGAGCATGGCTGGCTGTGTGCTCATGATTGGATTGGCTCAGGTCAGTCTTTGCCCTTTTCCATCTCGAAATTTCCACCATCTTGATAGAATATGTGAATTAGTTCTACT--AATCCG-TATTCATGACAAGATTAACGAGcagaaaaacatgaatatcGGAT-------ATGTGGCCGGATGCT
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold622   295905 374 +   386604 tttcaggtCTTCTTGGAACTTACGTCAGACTACCACCATTCAAATGGGATACCCTCACTTATGCCGACTATAAATCCTGGAGACCAATAGTTCGTCAG-----TTCGA-GAA--CATTTCTCGTCTTTTTAT--tacc---------tttttctattttcagaaatagtTGGTATGGCTGTCGgaatgttgtttttcaaacgaaTCTGTCATTTCCGCGACACCTTCATAATCTGTCTCGCAATTTTAAGCATGGCTGGTTGTGTGCTCATGATTGGATTGGCTCAGGTCAGTCTTTgcccttttttcc---------------------------atttttaaacaACACT-----AATCCGCAATCCTTGACGAGATTAGAG-----GAAATCATGAGTACCGGATATGTGAAATGTGCCCGGATACG
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0      2893786 381 +  4147112 TTTCAGGATTGCTGGGTACTTACGTCAGATTACCACCGTTCAAGTGGGACACTCTTACATATGCTGACTACAAATCATGGAGACCCATAGTTCGTTAG-----TTACT-GGA-------CTCATCTGATTATGATACCA--------ATTTTCTAACTTCAGAAATCGTGGGTATGGCTGTTggaatgttgtttttcaagcGAATCTGTCATTTCCGAGACACCTTCATAATCTGTCTCGCCATTTTGAGCATGGCTGGCTGTGTACTCATGATTGGATTGGCTCAGGTTAGTCTTtgccctctttttttcct------------------ttttgcttttcaaCCAACCCT-----AATCCG-GATTCTTGACGAGATTAGTG----AGAATTCATGAATACCGGATATTTGGCATGTGGCCGGATGCT
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17934   13827 360 +   591668 TTTCAGGATTACTCGGCACTTATGTCAGACTTCCTCCGTTCAAATGGGATACTCTCACTTACGCTGACTACAAATCATGGAGGCCCATAGTTCGTTAG-----T-----AAA-------TCATTTTTA------TACTA----gaactattttttcttttagaaATTGTCGGTATGGCCGTAGGAATGTTGTTTTTCAAGAGGATTTGTCACTTCCGAGACACTTTTATCATTGTTCTTGCTATTCTGAGCATGGCTGGCTGTGTGCTTATGATTGGATTGGCTCAGGTCAATCTTTAGTCCCCCCTTAAATT-----------------------CCTGCTGGATAATTC------ATTTCATAATCCTTGATGGGATTAATAATAAAAGAAAC------ACCGATT--------TCCTACTGGATGCT
i caeJap4.Scaffold17934 I 34 C 0

a score=-1529.000000
s ce10.chrX             4635254 12 + 17718866 ------------TTTATGTTTTTT
s cb4.chrX              9972959 12 + 21540570 ------------TTGATGAAAATC
i cb4.chrX              I 16 I 8
s caeRem4.Crem_Contig0  1564204 12 -  4500979 ------------TTTATTCGAATC
i caeRem4.Crem_Contig0  I 18 I 6
s caeSp111.Scaffold622   296297 12 +   386604 ------------ttaattcgaaTC
i caeSp111.Scaffold622  I 18 I 6
s caeJap4.Scaffold17934   14187 23 +   591668 TACATAATGAAAtgaattaaact-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2894167 37 +  4147112 I

a score=106262.000000
s ce10.chrX             4635266 124 + 17718866 TTTTACAGGCCTCATGGTTGATATTTGCAAGTTTGGCTCCAGGGAGTTTACACGGGTTGCTTAATCCAATGTCGTATACTTTTATAGCATGTATTGTAGAACAGGACGAGGTTGGCAATCGGAA
s cb4.chrX              9972979 120 + 21540570 tttttCAGGCATCTTGGATGATATTTGCAAGTTTGGGACCAGGAAGTCTTCATGGACTGCTCAACCCGATGTCGTACACATTTATGGCATGTATTGTAGAGCCTGATGaggttttcgg---aa-
i cb4.chrX              I 8 I 29
s caeRem4.Crem_Contig0  1564222 120 -  4500979 CCTTTCAGGCCTCGTGGATGATATTTGCAAGTTTAGCACCTGGAAGTCTTCACGGATTGCTCAACCCAATGTCATATACATTTATGGCATGTATAGTAGAGCCGGATGAGgtacaaaa---aa-
i caeRem4.Crem_Contig0  I 6 I 4
s caeSp111.Scaffold622   296315 120 +   386604 TATTTCAGGCTTCATGGATGATATTCGCAAGTTTAGCACCTGGAAGTCTTCACGGGTTGCTTAATCCAATGTCCTACACTTTCATGGCATGCATAGTAGAACCGGATGAGGTTAGCTA---GA-
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2894204 121 +  4147112 CGTTTCAGGCCTCATGGATGATATTTGCAAGTTTAGCTCCTGGAAGTCTTCACGGGTTGCTCAATCCAATGTCATATACGTTTATGGCATGTATAGTAGAACCGGATGAGGTAAAATA--GGA-
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17934   14210 117 +   591668 tttttcaggCTTCATGGATGATATTCGCTAGTTTAGCGCCCGGAAGTTTGCATGGATTACTCAATCCCATGTCATACACCTTTATGGCTTGCATAGTGGAACCGGATGAGGTCTAAA-------
i caeJap4.Scaffold17934 C 0 C 0

a score=-1079.000000
s ce10.chrX             4635390 15 + 17718866 AAAATGTATACATTC
s caeRem4.Crem_Contig0  1564346 10 -  4500979 aatgggaATA-----
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   296435 15 +   386604 ATTATGGATGATATC
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2894325 15 +  4147112 AGGATGTACAAAATA
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17934   14327 15 +   591668 AAAGAGCATATCATA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9973099 29 + 21540570 I

a score=-2402.000000
s ce10.chrX             4635405 8 + 17718866 --CTATTCCG
s caeRem4.Crem_Contig0  1564356 8 -  4500979 --ATATCCGG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   296451 4 +   386604 ------CTGG
i caeSp111.Scaffold622  I 1 I 7
s caeJap4.Scaffold17934   14342 6 +   591668 TGATAG----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2894340 11 +  4147112 I
e cb4.chrX              9973099 29 + 21540570 I

a score=554.000000
s ce10.chrX             4635413  9 + 17718866 -----------TACTTTTTC
s caeRem4.Crem_Contig0  1564370  9 -  4500979 -----------gttgttttc
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   296462  9 +   386604 -----------AGTGTTTTT
i caeSp111.Scaffold622  I 7 C 0
s caePb3.Scfld02_0      2894351  9 +  4147112 -----------tatgttttc
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17934   14348 20 +   591668 CACTCACAAACACCAATTTC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9973099 29 + 21540570 I

a score=219324.000000
s ce10.chrX             4635422 486 + 17718866  
s cb4.chrX              9973128 466 + 21540570  
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0  1564379 458 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   296471 442 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2894360 463 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   14368 454 +   591668  
i caeJap4.Scaffold17934 C 0 I 1437

a score=51974.000000
s ce10.chrX             4635908 378 + 17718866  
s cb4.chrX              9973594 463 + 21540570  
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig0  1564837 463 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   296913 450 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2894823 451 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   14822 1437 +   591668 I

a score=2371.000000
s ce10.chrX             4636286 49 + 17718866 TTTAATAGAGGGGGTTTCGTCA-CACCGCCAGGCAGCAGGTACAGTTTTG
s caeRem4.Crem_Contig0  1565300 38 -  4500979 TATATTC-----GGTTCAGTCGCCACCATCCATC-------ACAATTTTG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622   297363 38 +   386604 TTTATTC-----TGTTCAATCTTCTTCATTAGTC-------ACTACTTTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2895274 41 +  4147112 TTTA--------GGTTTAGTCACCATCATCAATT-GAAGGaactaatttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   14822 1437 +   591668 I
e cb4.chrX              9974057 56 + 21540570 I

a score=142042.000000
s ce10.chrX             4636335 840 + 17718866  
s cb4.chrX              9974113 866 + 21540570  
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig0  1565339 862 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622   297401 827 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2895315 864 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   14822 1437 +   591668 I

a score=225783.000000
s ce10.chrX             4637175 332 + 17718866 --CGGAGCCCCCGCCCCCAAATCAAGCTCGC--GCTTTTTTCCATTCTCACCTCTCACCTCAAGGACTA-----------CTCCT----------GCCCTCATT-------------TCTGTTCCTTACCAAATTCTGCTAGC---AT---ATTCTGAATCTCTGAAACT--GAAACAATGCCGAAACGAAAATTCCGCACAGTGTGTAGACGTGTGATAAATCGCTTTGTTATTATCAAAAAACTGAAAGGCAACTTCAGGACCACTGGGGT-CGCTCAAAAAATGGCAGATTCTGGAGG---TTC---AAACAAGCGACGTCAGAAGTTGAATGGAAGACTTTCAGTTGATCGATGTGCCATTTTGGAGTTGATAGTACAGGT
s cb4.chrX              9974979 334 + 21540570 --CCGAG--CCCGCCCCCAAATCAAgcgctt---tttcttttcat-------tcccACCTCAAGGACTACATACCTCCATCTTCTTATTCCCCACGTCCCCACT--------CTTGAACCGCTTTTTATTCTACCTTG-TGAA---GT---CTTCT----------------GTAATAATGCCTAAACGTAAATTTCGGACCGTCTGCAGACGCGTTATCAATCGTATCGtgattataaaaaaactaaaaggTAACTATAGAACCACTTGGGCTCGCTCAAATAATGACAGAATCTGGAGG---TTC---TCACAAACGACGTCAGAAGCTGAAAGGACGGCTGTCAGTGGATCGGTGTGCGATTCTGGAGCTGATTGTACAGGT
i cb4.chrX              C 0 I 86
s caeRem4.Crem_Contig0  1566201 317 -  4500979 --TGGAG--CCCGCCCCCAAATCAAGCGCTC---ttgcttttcat-------tttcacctcAAGGACTA-----------CTTCT----------GTCCTCATT-------CCTTCTGCTTCATCTTAccttattctg-aaaa---at---attct------------ctGAATAACTATGCCTAAGCGTAAATTTCGTACTGTGTGCCGACGCGTTATCAACCGTATtgttatcatcaaaaaattgcaaggTAACTTTAGAACCACTTGGGC-CGCTCAAATAATGACAGATTCTGGAGG---TTC---TCACAAACGTCGTCAGAAGCTGAAAGGACGACTCTCCGTGGATCGATGTGCTATTCTGGAGCTTATTGTACAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   298228 318 +   386604 --TGGAG--CCCGCCCCCAAATCAAGCGCCCCCTCTGCTTTTCAT-------TCTCACCTCGAGGACTA-----------CTCGT----------GCCCTC----------TTCTATTCATCGTCTTACCTTATTCTG-AATC---AT---ATTGG------------CT--GAAAACATGCCTAAACGTAAATTTCGGACCGTCTGTCGACGTGTCATCAATCGTATGgttattatcaaaaaactaaaaggtAATTTTAGGACCTCTTGGGT-CACTCGAATAATGACAGATTCTGGAGGTTCTTC---TCATAAACGACGGCAAAAGCTCAAAGGACGTCTCTCCGTGGATCGATGTGCTATTCTGGAGCTTATTGTACAGGT
i caeSp111.Scaffold622  C 0 I 44
s caePb3.Scfld02_0      2896179 318 +  4147112 --TGGAG--CCCGCCCCCAAATCAAGCTCTC---CTGCTTTTCAT-------TCCCACCTCAAGGACTA-----------CTCTT----------GCCCTCCCT-------CCTTATTCTGCTTCTTACcttattctg-aaacaatat---ATTCT------------CT--GAAACTATGCCTAAACGCAAGTTTCGTCTTGTTTGCCGTCGTGTTATCAACCGCATATATGTTATCAATAAAATGAAAGGTAACTTTAGGACCGCTTGGGT-CACTCGAATAATGACAGATTCTGGAGG---TTC---TCACAAACGACGGCAGAAGTTGAAAGGACGGTTATCAGTGGATCGATGTGCAATTTTGGAGTTGATTGTACAGGT
i caePb3.Scfld02_0      C 0 I 54
s caeJap4.Scaffold17934   16259 325 +   591668 CGAAGAG--CCCGCCCCCAAATCAAGCGCTCGCGTTTTATTCTAT-------TCTCACTTCAAGGACTA-----------CCCGT----------GTCCTCTGTTCGCTCCGCCTATTCCGTTCCTT---CTATTCCG-ATTC---TTCTAATTCT------------CT-------AATGCCAAAGCGTAAATTTCGAACTGTCTGCAAACGTGTCATCAGTAAAATTGTGATAATCAGAAAACTAAAAGGTGACTTTAGCACTGCTTGGGT-CACCCGAATAATGTCAGATTCTGGAGG---TACAAAACAGCAACGCCGGCAGCAGCTCAATGGTCGACTTTCTGTGGATCGATGTGCTATACTAGAGCTCATTGTGCAGGT
i caeJap4.Scaffold17934 I 1437 C 0

a score=-126.000000
s ce10.chrX             4637507 2 + 17718866 GA
s caeRem4.Crem_Contig0  1566518 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   16584 2 +   591668 AA
i caeJap4.Scaffold17934 C 0 I 178
e caePb3.Scfld02_0      2896497 54 +  4147112 I
e cb4.chrX              9975313 86 + 21540570 I
e caeSp111.Scaffold622   298546 44 +   386604 I

a score=-7823.000000
s ce10.chrX             4637509 479 + 17718866 GAATATTGTATTTTAGGCTTAGGAATAACCATTTCTAAGACTAAAATTGAATTATGGAATTTCGACATTTTTAGGATATACCTCATACAAAAGTATCACTATTTGAATCATTGATTTCATAATTAAACCTTGCAGAAAATTTTGGAAATTTGTTTTATTTTAAGTAAAAAGTGGTCAAAATTTAGTTGCGACACTTACGGGAAGTCTAAAGCATTGTCGCATGTTCAAACACCTAAAATTTTGAAATATAAGAAAATTTTTTTTTTTGATTGATAACATCCAAAAAATAAGTGTAAAATTGAGTTTCTTCACCTTTTTTGACTCGAAATTTTAAAAAAACTTACCAAAAAATTTGTTTTCCGtttttttataatttgaccattatagcaccataggaatgatttttagtcatttccccactgaccgtacttcacctttGAAATTATTCTTTTAAACTATACTTTACTTTCCATGACAAC
s caeRem4.Crem_Contig0  1566520 166 -  4500979 GCGT----------------------------------------------------------CGACAGT----AGAGATACC----------------------------------------------------GGAAAACCGGAAACTTTGCTCTTTGTCAGGTG---------CAAATTTTAAT---------------------------------------CTAACAAGTGCATTTCTAGAATGTA------------TTCTAGAACAAAAAGCTTCTGAGAATACGT-----------------------------------------------------AAACAATTTTT------------------------ACTGTAGCATTCCAGAAAA----------------------------------------------------TGAACTGTA---TACTGT-------AGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2896497  54 +  4147112 I
e caeJap4.Scaffold17934   16586 178 +   591668 I
e cb4.chrX              9975313  86 + 21540570 I
e caeSp111.Scaffold622   298546  44 +   386604 I

a score=-1048.000000
s ce10.chrX             4637988 14 + 17718866 CATGTTAAAAACGT
s caeRem4.Crem_Contig0  1566686  1 -  4500979 ----------C---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   298590 14 +   386604 CAAGTAAAAACTGT
i caeSp111.Scaffold622  I 44 C 0
e caePb3.Scfld02_0      2896497 54 +  4147112 I
e caeJap4.Scaffold17934   16586 178 +   591668 I
e cb4.chrX              9975313 86 + 21540570 I

a score=538.000000
s ce10.chrX             4638002 11 + 17718866 ACCTTTGTAGC
s cb4.chrX              9975399 11 + 21540570 ACTTCTTTAGC
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig0  1566687  5 -  4500979 ------GTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   298604 10 +   386604 ATCTTCGTAG-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2896497 54 +  4147112 I
e caeJap4.Scaffold17934   16586 178 +   591668 I

a score=29747.000000
s ce10.chrX             4638013 156 + 17718866 GTTTTTCACATGTATCTT-GTAGCAATTCATGTTAACATTTGTTTGCTCTAAACC-----CCCCAGA-GCAGAAGATGAAAC-------------------AAGTTGTCAAACTTTTCCGTACTGTAGCCTGCGTAGCAGTGTTGTGGTCAAATA-----------GAAATAAAAAACGATGTTGTGAATTGG----
s cb4.chrX              9975410 125 + 21540570 TTATGGCACATGTATCTCTGTAGTATTTCATGTTAACTTTTGTTTGCTCAGGTTCGAGAGCACCCGATATACAagattcaac-------------------aaa-----aaaccgTAGGCACGTGTAGTTTA------------GTGGTCAAATA---------------AAA-----------------CGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1566692 139 -  4500979 TTTTCAAACATGTATTTC-GTAGTAATTCATGGTATCTCTTGTTTGCTTAAGTTCGAGAGCACCAGA-gcagaagat---ga-------------------gaa-----aatgtgTAGCCTAGCGTAGTTCA--GCG---TGTTGtggtcaaaca---------------aaaaaaac-----tgtgaatcgA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   298614 177 +   386604 --TTTTCACATGTATTTC-GTAGTAATTCAtgttaaaaattgtttgcaCAAGCCCGAGAGCACCAGT-ACAGAAGATGAAACAAGatgctcattttcttcgaaa-----aaaccgTAGCCAATTGTAGTTTA--GCGTTTTGTGATGGTCAAACATACACACacacgaaaaaaagaac-----tgtgAATCGC----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2896551 142 +  4147112 GTTTTATACATGTATTTC-GTAGTAGTTCATGTTTACACTTGTTTGCCTAGTCGCGGAAGCACAAGA-GCAGAAGATGAGCC-------------------AAA-----AAACCGTAGCCTATTGTAG------------CGTTGTGGTCaaccac------------agaaaaaaac-----tgtgaaccACCCGA
i caePb3.Scfld02_0      I 54 C 0
e caeJap4.Scaffold17934   16586 178 +   591668 I

a score=214716.000000
s ce10.chrX             4638169 495 + 17718866  
s cb4.chrX              9975535 431 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1566831 483 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   298791 487 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2896693 476 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   16764 518 +   591668  
i caeJap4.Scaffold17934 I 178 I 2566

a score=-10770.000000
s ce10.chrX             4638664 117 + 17718866 TTAGCATTAATAGTTTATGCGTTTTCGAGTGGATTTTATCTGAAGTATGTTTCTGAAAGTGCACCAAACTATCAGCAAGGGACATTTTT-----GAAAACTACATAGGTTGCTAACATTACT
s cb4.chrX              9975966  59 + 21540570 CT--------TTGGC---------------------CTTTCG------------------------------CAACGACCATCgttcttttctcaaaaa----agaatttgcaagaataaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1567314  61 -  4500979 CT--------TAGTctcctc----------tcattttttttg------------------------------taacaaTACGCGTTCTATTCT-------------GGTTGCAgggatgaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299278  67 +   386604 CT--------TAGTCTTTTctttctagttttctttttgtccg------------------------------TAACAATTAACGTTCTT-----------------GGTTCCAAAGAATACT
i caeSp111.Scaffold622  C 0 I 20
s caePb3.Scfld02_0      2897169  42 +  4147112 tt--------tagttttctc--------tttctttttgttcg------------------------------tAACGATCAACGTTCT----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I

a score=-12436.000000
s ce10.chrX             4638781 58 + 17718866 AAATATCATGACAAAACTTTTCAAACAACGCTGGAATTATTTTATTTC---TAACTAGTAA
s cb4.chrX              9976025 24 + 21540570 -------at--ccgaaaatgaAGTACA---------------CACCCT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1567375 28 -  4500979 -------a------aaaaacttgtgCAGCG-------TTCTCTGCTAT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2897211 28 +  4147112 ----------------ACTTTCATGCGGGG-------TAATGCATTGGCAA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I
e caeSp111.Scaffold622   299345 20 +   386604 I

a score=-935.000000
s ce10.chrX             4638839 503 + 17718866  
s cb4.chrX              9976049 335 + 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0  1567403 340 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299365 300 +   386604  
i caeSp111.Scaffold622  I 20 C 0
s caePb3.Scfld02_0      2897239 330 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I

a score=-1060.000000
s ce10.chrX             4639342 6 + 17718866 AAAAAT---
s caeRem4.Crem_Contig0  1567743 4 -  4500979 ---CATT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299665 6 +   386604 ---AATTCT
i caeSp111.Scaffold622  C 0 I 30
e caePb3.Scfld02_0      2897569 0 +  4147112 C
e caeJap4.Scaffold17934   17282 2566 +   591668 I
e cb4.chrX              9976384 38 + 21540570 I

a score=-827.000000
s ce10.chrX             4639348 34 + 17718866 GAAATGTCGAATGAAAGGGAACATGATTATTTGC
s caeRem4.Crem_Contig0  1567747 25 -  4500979 ACAATTTATAAT---------GATACATATTCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2897569 24 +  4147112 -ATATTTATAGTG--------GATATTTATTTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I
e cb4.chrX              9976384 38 + 21540570 I
e caeSp111.Scaffold622   299671 30 +   386604 I

a score=728.000000
s ce10.chrX             4639382 26 + 17718866 -TCATTGAAATCTTCAAATCTTCAAAT
s caeRem4.Crem_Contig0  1567772 19 -  4500979 ACGATTGATAATCATGAAT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299701 26 +   386604 -ttagtGATAACAATGAGTCATCAAAA
i caeSp111.Scaffold622  I 30 C 0
s caePb3.Scfld02_0      2897593 21 +  4147112 -CCACTGATAACTATGAATAAT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I
e cb4.chrX              9976384 38 + 21540570 I

a score=-2199.000000
s ce10.chrX             4639408 17 + 17718866 AATCCCAC---GGTAATTGC
s cb4.chrX              9976422 14 + 21540570 AATCCCACACAAAc------
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0  1567791 11 -  4500979 AATCTCAc---ggt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299727 11 +   386604 CAACTAAC---GGC------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2897614  8 +  4147112 ---CTGGt---tgc------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   17282 2566 +   591668 I

a score=158380.000000
s ce10.chrX             4639425 183 + 17718866 TCCAT--TTTGTTTGAATTTCAGAAGCCTCATCTGCATCTGCGACACCACGCTTCTACATGTAGTCTCGTTGCAAAAAGCAGTGTTTGAACAAAGGGGCTATCTGATTTTCCGTATATCGCACTTTTGCAAGGAGCTGGAAGCATATGCAACTGTTATCGACTATCTCAACAAATTTATCCCACT
s cb4.chrX              9976436 177 + 21540570 --------ccatttatttttcagaagtctcaTCTGCATCTGCGACACCACACTTCTCCATGTTGTCTCGCTGCAAAAGGCTGTGTTCGAGCAAAGAGGATATCTCATCTTTCGCATTTCCCACTTTTGCAAAGAGCTCGAAGCGTATGCTACAGTAATCGACTATTTGAACAAATCAATCCCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1567802 177 -  4500979 --------tttcttgtttttcagaagccTCATATGTATCTGTGACACCACCCTGCTTCACGTTGTATCATTGCAAAAAGCAGTTTACGAGCAGAGGGGATACCTTATCTTCCGGATTTCTCACTTTTGCAAGGAACTCGAAGCATATGCGACAGTCATCGACTACCTGAATAAGTCTATTCCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299738 174 +   386604 -----------TTCGTATTTCAGAAGTCTCATCTGCATTTGTGATACCACGCTTCTCCATGTCGTTTCTCTACAAAAAGCAGTTTTCGAGCAAAGAGGATATCTCATTTTCCGCATTTCACACTTTTGTAAAGAACTTGAGGCATATGCAACAGTCATCGACTACTTGAACAAATCAATCCCTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2897622 175 +  4147112 ----------atttttatttcagaagtcTCATCTGCATTTGTGACACCACACTTCTCCATATTGTTTCCCTTCAAAAATCGGTGTTCGAGCAAAGAGGATATCTTATCTTCCGCATTTCCCATTTCTGTAAAGAGTTGGAGGCATATGCGACAGTTCTCGAATACTTGAACAAGTCGATTCCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   19848 185 +   591668 TCCAtgctatttttgttttacagAAGCCTCATTTGTATCTGTGACACCACACTTCTTCACGTCGTCTCACTACAAAAAGCAGTTTTCGAGCAACGCGGCTACTTTGTCTTTCGCATTTCACACTTTTGCAAAGAACTCGAAGCCTACGCCACTGTCATCGACTACTTGAACAAATCGATACCACT
i caeJap4.Scaffold17934 I 2566 I 1

a score=1961.000000
s ce10.chrX             4639608 5 + 17718866 GGTGA
s caeRem4.Crem_Contig0  1567979 5 -  4500979 GGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299912 5 +   386604 GGTAA
i caeSp111.Scaffold622  C 0 I 29
s caePb3.Scfld02_0      2897797 5 +  4147112 GGTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   20033 1 +   591668 I
e cb4.chrX              9976613 0 + 21540570 C

a score=846.000000
s ce10.chrX             4639613 3 + 17718866 GTT
s caeRem4.Crem_Contig0  1567984 3 -  4500979 GTT
i caeRem4.Crem_Contig0  C 0 I 11
s caePb3.Scfld02_0      2897802 3 +  4147112 GTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   20033 1 +   591668 I
e cb4.chrX              9976613 0 + 21540570 C
e caeSp111.Scaffold622   299917 29 +   386604 I

a score=87.000000
s ce10.chrX             4639616 14 + 17718866 GGAATTGCTCGATT
s caePb3.Scfld02_0      2897805 13 +  4147112 AG-GTGACTCAATT
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold17934   20033  1 +   591668 I
e cb4.chrX              9976613  0 + 21540570 C
e caeSp111.Scaffold622   299917 29 +   386604 I
e caeRem4.Crem_Contig0  1567987 11 -  4500979 I

a score=0.000000
s ce10.chrX             4639630 475 + 17718866 TTTTAATGATAATAAGCTCAAAATATTTCCAAAATACCCAAGTGTGTTATGAAAAGATTTCATAGTAGTTGAACATTTAGGATTTTTTCCCAAAATATATAGATTTTCTGGGATAAATTGGGCCACCTTTTGCTACTAATAATCACAGTGGCGGATTGTGCATTGCTTCTATTGAAGCAAATATGACACAATAAACGCATCGCAAAAAATATCTCTACACATAATGCATATTCGCGAGTTATGCACAATTTTTAGCCGCAAGCCCAAGCCGTAATACTGTTGTTTCGGTGTGCTAGAATGATGATTTACAGTGATCACAAAAAATGTGTCGGACGTGTAGGTGTGACTAATGTTTCAAAAGTCTATACGCGGATTATTTTGAATCATGCCTACGCTAGACTATAGTATCAAATATTGGCAAACATAGTAACCTGAAGCCAAATCGCAGAAGTTATTCAATTGTTGAATAATGACA
e caePb3.Scfld02_0      2897818  15 +  4147112 I
e caeJap4.Scaffold17934   20033   1 +   591668 I
e cb4.chrX              9976613   0 + 21540570 C
e caeSp111.Scaffold622   299917  29 +   386604 I
e caeRem4.Crem_Contig0  1567987  11 -  4500979 I

a score=184.000000
s ce10.chrX             4640105 13 + 17718866 Cttaaaatataat
s caeRem4.Crem_Contig0  1567998 11 -  4500979 CTTGAGacat--t
i caeRem4.Crem_Contig0  I 11 C 0
e caePb3.Scfld02_0      2897818 15 +  4147112 I
e caeJap4.Scaffold17934   20033  1 +   591668 I
e cb4.chrX              9976613  0 + 21540570 C
e caeSp111.Scaffold622   299917 29 +   386604 I

a score=575.000000
s ce10.chrX             4640118 3 + 17718866 ttt
s caeRem4.Crem_Contig0  1568009 3 -  4500979 ctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299946 3 +   386604 ttt
i caeSp111.Scaffold622  I 29 C 0
e caePb3.Scfld02_0      2897818 15 +  4147112 I
e caeJap4.Scaffold17934   20033 1 +   591668 I
e cb4.chrX              9976613 0 + 21540570 C

a score=-300.000000
s ce10.chrX             4640121 12 + 17718866 ttataaa-tttCA
s caeRem4.Crem_Contig0  1568012  9 -  4500979 ---ctat-tttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299949 12 +   386604 -ctgaatatttca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2897833 11 +  4147112 -tttgat-tttta
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold17934   20033  1 +   591668 I
e cb4.chrX              9976613  0 + 21540570 C

a score=1000.000000
s ce10.chrX             4640133 1 + 17718866 G
s cb4.chrX              9976613 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568021 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299961 1 +   386604 g
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2897844 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   20033 1 +   591668 I

a score=359179.000000
s ce10.chrX             4640134 365 + 17718866 TGCTTGGAAACTGAAAGGAATATGCGAGGATCTCTATTCCCACCACTCGACGGAAACTACGAGACTTATCAAGAAATCCTCAGAGTTATGGAAAAGCTGGACTCTTCAGTGTTTTTCGGCCGACCTATTGGCTTCCAATTTTCCCCATCTATCAACAAAATTTTCCGAATAATTGGTGTCGTACTTGCCACTTATAGTTTATCCTGGGAAAAAGGTCATGGAGCAATTGGCTCGCTCATCAACACTGGACGATTTTTCTTGAGCCCCGAGCAACGAGCAGAGCGCATCATTAAAGTAACCAAGGAGGCGGATATCGACTTCTGCAAGGGCTTCTGGAATCTCTCCGAGCTTAGTAATGTAAGTTT
s cb4.chrX              9976614 365 + 21540570 TGTCTAGAGACGGAGAGGAACATGCGTGGATCCTTGTTCCCACCGCTCGAGGGAAACTATGAGACCTATCAGGAAATCCTTCGTGTCATGGAAAAACTCGACTCGTCCGTCTTTTTTGGCCGTCCGATTGGCTTCCAATTCTCACCATCAATCAACAAAATCTTTCGGATTATTGGAGTCGTTCTTGCCACTTACAGTTTATCATGGGAGAAAGGGCACGGAGCCATCGGTTCACTCATCAACACTGGACGCTTCTTTTTGAGCCCAGAGCAACGTGCAGAGCGTATCATTAAAGTCACCAAGGAAGCGGATATTGATTTCTGCAAAGGTTTCTGGAATCTGTCCGAGTTGAGCAATGTGAGTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568022 365 -  4500979 tgtCTCGAGAGCGAAAAGAACATGAGAGGGTCACTATTCCCACCACTCGACGGTAACTACGAGACCTATCAAGAAATCCTACGAGTCATGGAGAGACTTGATTCATCGGTCTTCTTTGGTCGTCCAATTGGTTTCCAATTCTCGCCATCTATCAACAAAATCTTCCGCATCATTGGAGTTGTACTCGCCACTTACAGTCTGTCATGGGAAAAGGGACATGGTGCGATTGGTTCACTTATCAATACTGGAAGGTTCTTTTTGAGTCCTGAGCAGAGAGCGGAGCGTATCATAAAAGTGACAAGAGAGGCGGATATCGATTTCTGCAAGGGATTCTGGAACCTTTCAGAGCTCAGTAATGTGAGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   299962 365 +   386604 TGCCTGGAGAGCGAGAAAAACATGCGAGGATCATTATTCCCACCACTCGATGGCAACTATGAAACCTATCAAGAAATTCTGCGAGTCATGGAAAGACTTGACTCATCCGTATTCTTTGGTCGCCCGATCGGATTCCAATTCTCTCCCTCCATCAACAAAATCTTCCGCATCATTGGCGTCGTCTTAGCCACTTACAGTTTGTCATGGGAAAAGGGTCACGGGGCGATCGGTTCCCTTATCAATACCGGACGTTTCTTCTTGAGCCCAGAGCAAAGAGCAGAGCGTATCATTAAAGTGACAAAGGAGGCGGATATCGACTTTTGCAAAGGCTTCTGGAATCTTTCCGAGCTAAGCAATGTAAGATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2897845 365 +  4147112 tgcctggaaagtgagaaaaacatgCGCGGTTCGCTGTTCCCACCACTCGATGGAAACTATGAGACTTATCAAGAAATTCTCCGAGTCATGGAAAAACTCGACTCCTCTGTGTTCTTCGGCCGACCCATTGGATTCCAATTCTCTCCATCCATCAACAAGATTTTCCGCATCATCGGCGTTGTCCTCGCCACCTACAGTTTGTCATGGGAAAAAGGTCACGGGGCGATTGGGTCTCTTATCAATACCGGACGTTTCTTCTTGAGCCCAGAGCAAAGAGCAGAACGAATTATCAAAGTGACAAAGGAGGCGGATATCGACTTTTGTAAAGGTTTCTGGAATCTTTCAGAACTCAGCAATGTAAGTGT
i caePb3.Scfld02_0      C 0 I 48
s caeJap4.Scaffold17934   20034 364 +   591668 TGCTTGCAAAGTGAGAAAAATATGCGAGGTTCACTATTTCCACCACTCGACGGAAACTACGAGACCTATCAGGAAATCCTACGGGTTATGGAGAAACTTGACTCGTCTGTCTTTTTTGGGAGGCCCATTGGATTCCAGTTCTCCCCGTCTATCAACAAAATCTTTCGTATCATTGGAATAGTTCTTGCCACATACAGTCTTTCATGGGAGAAAGGACACGGAGCAATTGGCTCGCTTATCAACACGGGAAGGTTTTTTCTGAGTCCAGAGCAGAGAGCGGAGCGCATTATCAAAGTGACACGGGAGGCGGATATAGATTTTTGCAAAGGATTCTGGAATTTGTCAGAGCTCAGCAATGTAAGTA-
i caeJap4.Scaffold17934 I 1 C 0

a score=-10774.000000
s ce10.chrX             4640499 50 + 17718866 -----TCGCTTTAGTTTTTCAGAAAGAATGTTGACATACATATTTGTGATTCATC
s cb4.chrX              9976979 32 + 21540570 ------------TCTATTTTAGGGAAACTAT-----------TTtgaattcaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568387 30 -  4500979 ------------TAGCTTTAA---AAACGGTC----------TCTGAGTTACACG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   300327 46 +   386604 -----TCCCATTAAGCtattagaaaaacaaaca----aaatatttggaaaccatg
i caeSp111.Scaffold622  C 0 I 8
s caeJap4.Scaffold17934   20398 34 +   591668 GCACGTTAGTTGATTTTATCGGAAAA----------------CTTGAAAT-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2898210 48 +  4147112 I

a score=249223.000000
s ce10.chrX             4640549 320 + 17718866 AAATTAAGTAGAAGCCAACATTATCGTTTCCATATTACAGAACATGCCGAAATTTTTCTGTCCAAATATGGCGCTCAACGAGCTGAGAGAAATCCCGCTGGATGGGGCGATTCCGATGGAGGGGAAGAGTGGAGAAATGGTGATGGTACCCGAACCATCTGCTCACACCGGACCAAGACCAGTACAATATCGAATTTTATCGACAGTTCATAGGGAGAAAATGTCATCGTCCGCTTTGTCAACAACACATCCGCCATCAAAATATCTCGTCTTGCATTGCCACGGAGGCGGTTATGTAGCAACATCGAGCAAATCTCATG
s cb4.chrX              9977011 288 + 21540570 -------------------------at-------tttcagaatatgccGAAATTCTTCTGCCCAAATATGGCTCTCAACGAACTTCGAGAAATTCCACTAGCAGGCGCAATTCCGATGGAAGGCAAAAACGGAGAACTGGTGATGGTTCCAGAACCATCAGCTCACACTGGACCACGTCCAGTTCAATATCGTATTCTCTCTACTGTTCATCGTCAGAACATGTCTTCATCTGCCTTGTCAACCACACATCCTCCGTCCAAATACCTCGTACTTCACTGCCATGGTGGAGGCTACGTGGCAACATCTAGCAAGTCGCACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568419 288 -  4500979 -------------------------AT-------TTTTAGAACATGCCAAAGTTCTTCTGCCCAAATATGGCTCTGAATGAAATTCGAGAGATCCCACTTGACGGTGCCATTCCAATGGAAGGGAAGAGCGGAGAAACGGTTATGGTCCCTGAACCATCAGCCCATACAGGACCACGACCTGTTCAATACAGAATCCTCTCCACAGTTCATAGACAGAATATGTCATCATTCGCGTTGTCGACTACCCATCCGCCATCAAGGTACTTGGTTCTTCATTGTCATGGAGGTGGCTACGTGGCGACATCCAGCAAGTCTCATG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622   300381 313 +   386604 aaagaaaaagaaagtctatgcattatt-------tttcagaacatgcCAAAATTCTTCTGCCCAAATATGGCTTTGAACGAATTGAGAGAGATTCCACTTGAGGGATCAATTCCAATGGAAGGAAAGAACGGAGAATTGGTTATGGTACCAGAGCCTTCTGCACACACTGGTCCGAGACCTGTGCAATACAGAATTCTCTCGACTGTTCATCGACAAAACATGTCCTCTTCGGCTCTATCGACTACACATCCACCATCAAAGTATCTTGTTCTTCATTGTCATGGCGGTGGCTACGTTGCCACTTCTAGCAAGTCTCACG
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0      2898258 315 +  4147112 AGAGAGAACAAAGACTGAAACTTTGTT-----AATTTCAGAACATGCCAAAGTTCTTCTGCCCAAATATGGCATTGAACGAGTTGAGGGAGATTCCACTCGAAGGATCAATTCCAATGGAAGGAAAGAACGGAGAAATGGTTATGGTGCCTGAACCATCTGCGCACACCGGACCAAGACCTGTCCAATACAGAATTCTCTCTACCGTTCATAGACAAAACATGTCATCATCAGCACTGTCCACTACCCATCCTCCATCTAAGTATCTTGTTCTCCACTGCCATGGCGGTGGTTATGTTGCCACTTCGAGCAAGTCTCATG
i caePb3.Scfld02_0      I 48 C 0
s caeJap4.Scaffold17934   20432 286 +   591668 ----------------------------------CTTCAGAACATGCCAAAGTTTTTCTGCCCAAACATGGCGCTGAATGAATTGCGAGAAATCCCACTTGAAGGACCGATTCCAATGGAAGGAAAGCAAGGAGAGATTGTGATGGTCCCCGAGCCATCCGCACACACTGGTTCAAAGCCAGTTCAGTTTAGAATTCTTTCCGCTGTTCATCGGCAGAATATGTCCTCATCCGCCTTGTCAACAACGCACCCTCCATCAAAGTACCTTATTCTTCATTGTCATGGTGGAGGTTATGTGGCCACGTCTAGCAAATCACACG
i caeJap4.Scaffold17934 C 0 C 0

a score=-16803.000000
s ce10.chrX             4640869  64 + 17718866 AGGTAGG-------------CTTGAAATA-------------------------------------------------------TGAAAATTTTAATA----------------TTTGAAATATTGTCTTG-------CTAGGCAAAAA----AATTTC
s cb4.chrX              9977299  18 + 21540570 AGGTA--------------------------------------------------------------------------------------TTAATTA----------------TCCGAa---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568707  48 -  4500979 AGGTA--------------------------------------------------------------------------------------ACCATTAC--------------TTTTGAAATTAAGTCTAT-------ACGGATAGTAT----AATTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   20718 159 +   591668 AGGTACATGTATTGTGTGTTCCTGAAataatggtgtacattgtggtctcgccacggacggtgtttgcagacttgttgATTTAGgtgcaaatttgaatttttccgacgaataaattccgatattttttttgttattagcccggaaaaaattttgaattcc
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2898573   0 +  4147112 C
e caeSp111.Scaffold622   300694   0 +   386604 C

a score=-4160.000000
s ce10.chrX             4640933 64 + 17718866 AAGAAATTGCAAGAGTTAGTTAAGGT---AGCCTTAAAAAGTGTTTTCATGAAAGTTTTACAAAAAG
s cb4.chrX              9977317 10 + 21540570 --------------------------------------------------gatagtttta-------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   20877 67 +   591668 atagaaataaaaaaacgaaaaatggcaaaaatactaatggacctattcacaaaactggaaaaaaaag
i caeJap4.Scaffold17934 C 0 I 195
e caePb3.Scfld02_0      2898573  0 +  4147112 C
e caeSp111.Scaffold622   300694  0 +   386604 C
e caeRem4.Crem_Contig0  1568755  0 -  4500979 C

a score=-1214.000000
s ce10.chrX             4640997 73 + 17718866 TTTTTAAGAAGGCACTAGAGGATGTGCTAGCCACATTGAAACTTTCTTAAATCTACGTTTTCACAAAGTGTAT
s cb4.chrX              9977327  9 + 21540570 ----------------------------------------------------------------aaaatgtat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0      2898573  0 +  4147112 C
e caeJap4.Scaffold17934   20944 195 +   591668 I
e caeSp111.Scaffold622   300694  0 +   386604 C
e caeRem4.Crem_Contig0  1568755  0 -  4500979 C

a score=0.000000
s ce10.chrX             4641070 44 + 17718866 GGCAAACTTCTTCAATTCTCGAACCTAGAATCTCTCCTGGAGAT
e caePb3.Scfld02_0      2898573  0 +  4147112 C
e caeJap4.Scaffold17934   20944 195 +   591668 I
e cb4.chrX              9977336  0 + 21540570 C
e caeSp111.Scaffold622   300694  0 +   386604 C
e caeRem4.Crem_Contig0  1568755  0 -  4500979 C

a score=-24.000000
s ce10.chrX             4641114 68 + 17718866 GCACGGCTGATATAA--ATTGCAAGA----GTAATAGAGGCTGTAAAACGGCTGTCTTTTCTAAATGCTTTTGA
s caeJap4.Scaffold17934   21139 48 +   591668 ACGCGGTAAATATCACTATTCCAGGAAAACGTAATA-------------------------TAAATACTTTTG-
i caeJap4.Scaffold17934 I 195 C 0
e caePb3.Scfld02_0      2898573  0 +  4147112 C
e cb4.chrX              9977336  0 + 21540570 C
e caeSp111.Scaffold622   300694  0 +   386604 C
e caeRem4.Crem_Contig0  1568755  0 -  4500979 C

a score=-3213.000000
s ce10.chrX             4641182 59 + 17718866 TTTTATTTTACCTTAAACAATCAAGAGTTTGTCCAAAACTGTCATAATATAAATATTTA
s cb4.chrX              9977336 10 + 21540570 ttatatTCCA-------------------------------------------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   21187 29 +   591668 TTCTGTTCTC-----AACAACCCCATCTGTTTCC-------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2898573  0 +  4147112 C
e caeSp111.Scaffold622   300694  0 +   386604 C
e caeRem4.Crem_Contig0  1568755  0 -  4500979 C

a score=136716.000000
s ce10.chrX             4641241 160 + 17718866 AGACATATCTTCGGCAATGGTCAAAAGCTTTGAATTGCCCAGTCGTCTCTGTGGAGTACTCGCTGGCTCCGGAAAACCCGTTCCCAAGACCGACCGAGGAGGTTTTGTTCGCCTACTCTTGGATTATCAACAATCCGGCAGCAGTTGGTGAGGATTTTGT
s cb4.chrX              9977346 148 + 21540570 -GACATATCTCCGTCAGTGGGCCAAAGCATTGAATTGTCCTGTGGTGTCTGTTGAATATTCTTTGGCTCCAGAAAATCCGTTCCCGAGACCAACGGAGGAAGTGCTCTTCGCCTATTCATGGATCATCAACAATCCAGCAGCAGTCGGG-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1568755 149 -  4500979 AGACATATCTGCGCCAGTGGGCCAAGGCGTTAAATTGTCCGGTGGTGTCTGTCGAGTACTCACTGGCTCCTGAAAACCCGTTTCCAAGACCAACAGAGGAAGTTCTTTTTGCATACTCATGGATTATCAACAACCCAGCGGCAGTTGGT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   300694 160 +   386604 AGACCTATCTTCGTCAATGGGCAAAAGCCTTGAACTGTCCAGTGGTGTCTGTTGAGTATTCGCTCGCTCCAGAGAATCCGTTTCCACGACCTACAGAAGAGGTTCTTTTTGCATACTCGTGGATCATCAATAACCCTTCAGCAGTTGGTATGTTACCGCc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2898573 159 +  4147112 AGACATACCTTCGTCAATGGGCAAAAGCTCTGAACTGTCCGGTAGTTTCTGTGGAGTATTCCCTCGCCCCAGAAAATCCATTCCCACGACCAACTGAAGAAGTGCTTTTTGCATACTCATGGATCATCAACAATCCGGCTGCTGTTGGTATGTT-CCGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   21216 160 +   591668 AGACATATCTTCGTCAGTGGGCAAAGGCTTTGAACTGCCCGGTTGTATCAGTTGAGTATTCCCTGGCTCCGGAAAATCCGTTTCCGCGACCCACAGAAGAAGTTCTCTTTGCTTACTCTTGGATTATCAACAACCCGGCAGCTGTCGGTacgtttttagt
i caeJap4.Scaffold17934 C 0 I 447

a score=-438.000000
s ce10.chrX             4641401 8 + 17718866 GATATTAA
s caeSp111.Scaffold622   300854 6 +   386604 a--actga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2898732 8 +  4147112 GTTCTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   21376 447 +   591668 I
e cb4.chrX              9977494 0 + 21540570 C
e caeRem4.Crem_Contig0  1568904 0 -  4500979 C

a score=129909.000000
s ce10.chrX             4641409 166 + 17718866 AAGTAAAAAT------TTTCCATTTCAGGTTGGACCGGTGAAAAAATCGTTATGGTCGGTGATTCTGCAGGAGGAAATTTGATCATGTCGGTGAACCTTCGTCTCATTCAGCTCAACATCAAACGACAACCTGATGGTCTTGTACTTTGCTACACCCCGTTCTTGTTCCAGG
s cb4.chrX              9977494 142 + 21540570 ------------------------------TGGACAggagaaaaaattgtgatggTTGGTGACTCGGCTGGTGGAAATTTGATTATGTCGGTCAATATTCGTCTTGTCCAACTGAACATCAAGCGACAGCCTGATGGGCTCGTCCTCTGTTACACACCATTTTTGTTCCAGG
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig0  1568904 142 -  4500979 ------------------------------TGGACCGGCGAGAAGATTGTGATGGTTGGTGACTCTGCCGGTGGAAACTTGATCATGTCTGTCAATCTTCGTCTCATCCAGCTGAACATCAAAAGACAACCGGATGGACTTGTTCTCTGCTACACTCCATTTTTGTTCCAgg
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold622   300860 170 +   386604 aatttaatat--taTGATTCTTATTTAGGTTGGACTGGGGAGAAAATAGTGATGGTTGGTGATTCAGCAGGAGGTAACTTGATCATGTCAGTGAATCTTCGTCTTATCCAATTGAACATCAAAAGACAACCTGATGGTCTCGTCCTTTGCTACACACCATTCTTGTTCCAGG
i caeSp111.Scaffold622  C 0 I 38
s caePb3.Scfld02_0      2898740 171 +  4147112 AACTCAATAC-ATACCAAGTAATTTCAGGCTGGACTGGAGAGAAAATTGTGATGGTTGGTGATTCGGCTGGTGGTAACTTGATAATGTCTGTGAATCTTCGTCTCATTCAACTGAACATCAAAAGACAACCGGATGGACTTGTCCTCTGCTACACTCCATTCTTATTTCAGG
i caePb3.Scfld02_0      C 0 I 46
s caeJap4.Scaffold17934   21823 165 +   591668 ------AAACAAAATTGGTGAAGTTTAGGATGGACTGGAGAAAAAATAGTTATGGTTGGCGACTCGGCAGGAGGAAACTTGATAATGTCGGTCAATATTCGTCTGATCCAACTCAACATTAAACGCCAACCAGACGGATTGGTGTTATGCTACACACCATTCTTGTTCCAG-
i caeJap4.Scaffold17934 I 447 C 0

a score=0.000000
s ce10.chrX             4641575 40 + 17718866 TGATACTGTTCTTCTAGCTTTTTTGACATTCAAACTTTTC
e caePb3.Scfld02_0      2898911 46 +  4147112 I
e caeJap4.Scaffold17934   21988  0 +   591668 C
e cb4.chrX              9977636 41 + 21540570 I
e caeSp111.Scaffold622   301030 38 +   386604 I
e caeRem4.Crem_Contig0  1569046 38 -  4500979 I

a score=215195.000000
s ce10.chrX             4641615 237 + 17718866 TTTCAGTATCTTCCATCACCATCTCGAATGCTCAGCGTCATGGATCCTCTTCTTCATACGGGAGTAGTCTTGCGAATTGTAGCCGCGTATACTGGAGCATACGGTGCTCAGATGAACAACAATAAGCTCAAAAAGAGCAAAAATTGTCT---CGGCGACAATGATATGTATGCTTCACATCGATCACTTCAGGAGTACGTAAATGAAGTGCAGAAAACAAAAGTTGACTTTTCCGTAAGT
s cb4.chrX              9977677 237 + 21540570 tttcaGTATTTGCCTTCACCGTCTAGAATGCTGAGTGTCATGGACCCACTTCTCCATATGGGTGTAGTCTTGCGATGTGTGGCTGCGTACACTGGAGCCTATGGAGCACAAATCAACAATAACAAGTTGAGAAAAAGTAGGAATAGCAT---TGGAGGAACCGATATGTACGCTTCGCATCGATCTCTTCAAGAGTATGTCAATGAGGTTCAGAAGACTAGAGTTGATTTTTCggtgagt
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig0  1569084 237 -  4500979 ttacagtaccTTCCATCGCCATCCAGAATGCTCAGTGTCATGGATCCCCTTCTTCACATGGGAGTTGTTCTTCGTTGCGTAGCAGCATACACTGGAGCCTACGGAGCCCAAATCAATAATAACAAGTTGCGAAAGAATAGAAATAGCAT---TGGAGGAACTGACATGTACGCTTCTCATCGATCTCTACAAGAATATGTTAACGAGGTTCAGAAGACTAAAGTTGATTTTTCCGTGAGT
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold622   301068 237 +   386604 ttttAGTATCTCCCATCGCCATCTCGAATGCTCAGTGTAATGGATCCTCTTCTCCACATGGGGGTTGTTCTTCGATGCGTGGCAGCTTACACTGGCGCCTACGGTGCTCAAATGAACAATAACAAACTGAAGAAGAGCAGAAATAGTAT---TGGAGGAAACGATATGTATGCATCTCATCGTTCCCTTCAGGAATATGTGAATGAGGTTCAGAAAACTAAAGTAGACTTTTCggtgagt
i caeSp111.Scaffold622  I 38 C 0
s caePb3.Scfld02_0      2898957 237 +  4147112 TTTCAGTACCTCCCATCGCCATCAAGAATGCTCAGTGTAATGGATCCTCTTCTCCACATGGGAGTTGTTCTTCGATGTGTTGCAGCATACACTGGAGCCTATGGTGCTCAAATCAACAATAACAAGTTGCGAAAGAGTAGAAATAGTAT---TGGTGGAACTGATATGTATGCATCTCACCGCTCTCTTCAAGAGTATGTCAACGAAGTTCAAAAGACTAAAGTCGATTTTTCGGTGAGT
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold17934   21988 234 +   591668 ------TACTTGCCATCTCCGTCGCGAATGCTCAGTGTGATGGATCCCCTTCTTCACATGGGAGTTGTTTTGCGTTGTGTGGCAGCCTACACTGGCGCTTATGGAGCTCAGATCAACAATAACAAGTTGaaaaaaaGCCAAGACGTGCTGAGCGATGGATCGGATATGTATGCGTCCCATCGTTCGCTTTTAGATTACGTGAATGAGGTTCAAAAGACAAAAGTTGATTTTTCGGTGAGT
i caeJap4.Scaffold17934 C 0 I 20

a score=-1043.000000
s ce10.chrX             4641852 7 + 17718866 GACTAGC
s caeRem4.Crem_Contig0  1569321 3 -  4500979 AAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2899194 7 +  4147112 TATTTGA
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17934   22222 20 +   591668 I
e cb4.chrX              9977914 0 + 21540570 C
e caeSp111.Scaffold622   301305 0 +   386604 C

a score=584.000000
s ce10.chrX             4641859 14 + 17718866 CGATAATTTTTTTT
s cb4.chrX              9977914  9 + 21540570 -----ctttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1569324 11 -  4500979 ---CAACTATTTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   301305  9 +   386604 -----tttctttct
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2899201 21 +  4147112 I
e caeJap4.Scaffold17934   22222 20 +   591668 I

a score=-1089.000000
s ce10.chrX             4641873 10 + 17718866 GCAATTTCAA
s cb4.chrX              9977923 10 + 21540570 tcaatttaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1569335  9 -  4500979 TCGA-TTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   301314 10 +   386604 tggCTCCATA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934   22242 10 +   591668 ACGAGTTCag
i caeJap4.Scaffold17934 I 20 C 0
e caePb3.Scfld02_0      2899201 21 +  4147112 I

a score=199585.000000
s ce10.chrX             4641883 326 + 17718866 TTTCAATT---------------------TTTTCCAGGGTGGATCTCAATCAATAGTGTCTCTTGTACAAAAAAGTCATGATAATGACGGGTTTTCCAAGACAAAAGGAAATTCTTATTATAAAAAGGAG---TCGAAGGAAAAAGT------TGATGTAGATCGAGTCGAGAATGAAATCGAAGAGAAAACTGACAAGAACGATGTTGATAGCGAAGACGATGCTCTCGAAACTACCAGCATTGGCAGTG-------------------------------------------TCCAAGTGGACGCTGATCCATTCCACATTCAGTTGAATCAGACATTACACGATGACGATCTTATAAGCTTCCTGAGTCATCATCCGTTAACTAAATAGTGAGTTT-
s cb4.chrX              9977933 327 + 21540570 ----tgttttcg-aaaaaaaaattg---ggcttGCAGGGAGGATCTCAATCAATTGTTTCCCTTGTACAAAAGAGTCATGACAACGGCGGGTTCGCCAAGACAAACGGAAATTCATATTATAAAAAGGAG---------ACCAAGAC------AGAGATTGAAATTGTCAAGAAG------ACGGAAGAAGTGGAGAAAGATGGGTGTGAAAGTGAAGACGATGCTTTGGAAACCACTAGTATCGCTAGCG-------------------------------------------TTCAAGTCGATGCGGATCCGTTCCATATCCAACTCAACCATACATTGCACGACGATGACCTCATCAGCTTCCTTAGTCATCATCCCATCACCAAAGAGTGAGTCT-
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0  1569344 334 -  4500979 ----TATT-----ACAACACATGTA---TGCTT-CAGGGAGGATCTCAGTCCATCGTTTCATTGGTTCAAAAAAGTCATGACAACGACGGGTTTGCCAAGACCAAAGGGAATTCTTATTACAAATTGGAG---TCAGATGCGAAGACTTCGCTAGAAACTGAAGCAATCGAGAAG------ACCGAGGTATTGGAGAAGGATGAGTGTGAATGTGAAGATGATGCTCTGGAAACCACAAGTATCGCTAGTG-------------------------------------------TTCAAGTGGATGCAGACCCATTTCATATCCAACTAAACCATACAATGCATGACGATGACCTCATCAGCTTCCTCAGTCATCATCCTATCACCAAAGAgtaagttt-
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold622   301324 322 +   386604 TTCCAATT-------------CCTA---TGATTTCAGGGAGGTTCACAATCAATTGTATCTCTTGTACAGAAGAGCCATGACAATGACGGGTTTGCTAAAACAACAGGAAACTCATACTTCAAGAAAGAg---tcaaaagagaaagt------aacggatgaagaaaatgggaaa---------ggAGAGCTCGAGAAAGATGAATGTGACAGTGAAGACGATGCATTGGAGACGAATAGTATTGCTAGTG-------------------------------------------TTCAAGTTGATGCTGATCCATTCCATATTCAACTCAATCATACTCTTCATGACGATGATCTCATCAGCTTCCTAAGTCATCATCCAATTACCAAAGAGtaagttt-
i caeSp111.Scaffold622  C 0 I 20
s caePb3.Scfld02_0      2899222 315 +  4147112 TATCAATT-----------------------TTTTAGGGTGGATCTCAATCCATTGTATCACTTGTTCAAAGAAGCCATGACAACGACGGGTTTGCAAAAACTAAGGGCAACTcttacttcaaaaaagaa---tcaaaggAGAAACT------GACAATTGAAGATGTTGAGAAA---------GAAGTACTGGACAAAGATGATTGTGATAGTGAGGATGATGCTCTGGAGACCACAAGCATTGCCAGTG-------------------------------------------TCCAAGTTGATGCTGATCCATTCCATATCCAACTCAACCACACTCTTCATGACGACGATCTCATCAGTTTCCTCAGTCACCACCCGATAACAAGAAAGTGAGTGT-
i caePb3.Scfld02_0      I 21 I 16
s caeJap4.Scaffold17934   22252 383 +   591668 -----gtttgaacaaaaaaaaaatacattttttctagGGAGGGTGTCAGTCAATTGTCTCACTCGTTCAAAAAAGCCATGACAACGATGGATTCGCCAAAACAAAGGGAAATTCATACTACAAGAAGGAGGAGTCAAATGAGGACGA------GAAGTTTTCAGAGACCAAGGTT------TGCCTTGAAAAGGACGAGGATGGAATTGACAGTGAAGACGATGCTCTGGAAACTACAAGCATTGCCAGTGTGCAGGtagatttttaaataaaatgtcTGCAATATGCTAAAAATCCAGGTGGATGCTGACCCGTACCACATTCAACTCAACCACACAATGCATGACGACGACTTGATCAGCTTTTTGAGCCACCATCCAATCACTAAAAAGTaagaaac
i caeJap4.Scaffold17934 C 0 C 0

a score=-5909.000000
s ce10.chrX             4642209 29 + 17718866 AATTTCAAGAAAT-----GACAGAAGTGGATTGA-----------
s cb4.chrX              9978268 18 + 21540570 AACTTCAACAATAATCTT---------------------------
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold622   301666 11 +   386604 aa--acaaaaaaa--------------------------------
i caeSp111.Scaffold622  I 20 C 0
s caePb3.Scfld02_0      2899553 13 +  4147112 AATTACAACAAAA--------------------------------
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17934   22635 24 +   591668 attttcagaaaat---------------------tgcaaACTTAA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0  1569678 31 -  4500979 I

a score=660841.000000
s ce10.chrX             4642238 1157 + 17718866  
s cb4.chrX              9978286 1113 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1569709 1137 -  4500979  
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold622   301677 1124 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2899566 1120 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   22659 1123 +   591668  
i caeJap4.Scaffold17934 C 0 I 4752

a score=-16625.000000
s ce10.chrX             4643395 173 + 17718866 AT-TTAAGTTTCATCG-------------------GAGGCACCGC-AGAATGATACGTGTATTATGATTTTATTGATACCCCCTTCCCCAACAT----CTCTTTTTATTCCAATGGCTTT--TATTGTCGCCTCATT---TCTGAGTACAGT--TCACTGCCATAGTTCCT-G--TTTCATGGGTTTTTTGTTTGCAATTATTTCTTT-----
s cb4.chrX              9979399 199 + 21540570 AGCCTAGAAAGCGTTTTGGTGGGGTGCGCCATCGCAACACAACTCATACGAGTATTGTTCTCT---TTTTAGTCCGTAATCCTTTTCACCAGTCATCAAGAATTTTCTTGTAAATGTATT--TATTCTTACCTCCAAAAATCCTCCCTCATC--TTATAGCCATAGTCTGT-GACTTTGATGTGTGTT------TCAAAccaattattctttt
i cb4.chrX              C 0 I 721
s caeRem4.Crem_Contig0  1570846 159 -  4500979 AA--TTAGAAGCGCTT-------------------AAAACGGCGCGTGTATGTTACGTGTAAA---TCTTGGT--------TTTACTCCCAGTC----AGGATAGTTTTGTAAATGATTT--CTCTCATTACTCCAA--------CCTCACT--ATTTAgccatttttatt-gtttctaaTGGGTGTTAC----Tcaattcattcttttttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   302801 168 +   386604 AA-TTAGAAAGCGTCAG------------------AAGACGGCGC-TGAATGTTACGTGTATA---ACCTAAT--CTACCCCAATTTCCTAGTT-TGAATCGTATAATTGTGCTTTTATT--CTCATCCATTTCTAT---CCT--CCACCTCTATTTTAGCCATAGTCCAC-AATTTTGATGGGtctt------tcaatttattcttt-----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2900686 163 +  4147112 AT-TTAGGAAGCGT-------------------------TTACGC-TTATTGCTACGTGTatt---atcttct--tcattcttctctc----------aTCTTTTCATTATGACTTTATTTCCTCATATATCTCCAT---TCTAACCTCCTTCATTTAAGCCATAGTCGACAAATTTCGATGGGTCCCACATGATTAATTCGCTCTTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   23782 4752 +   591668 I

a score=600.000000
s ce10.chrX             4643568 1 + 17718866 C
s caeRem4.Crem_Contig0  1571005 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   302969 1 +   386604 c
i caeSp111.Scaffold622  C 0 I 554
s caePb3.Scfld02_0      2900849 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598 721 + 21540570 I

a score=1177.000000
s ce10.chrX             4643569 25 + 17718866 CCCCTTCA-----ACACCTTCAGCAATATT
s caeRem4.Crem_Contig0  1571006 20 -  4500979 ccatttct-----acA-----AGCAATACT
i caeRem4.Crem_Contig0  C 0 I 249
s caePb3.Scfld02_0      2900850 20 +  4147112 -----TCTCACAGACA-----Agcaatatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598 721 + 21540570 I
e caeSp111.Scaffold622   302970 554 +   386604 I

a score=432.000000
s ce10.chrX             4643594 11 + 17718866 AAATTATTTGA
s caePb3.Scfld02_0      2900870  9 +  4147112 --gttttttga
i caePb3.Scfld02_0      C 0 I 1480
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598 721 + 21540570 I
e caeSp111.Scaffold622   302970 554 +   386604 I
e caeRem4.Crem_Contig0  1571026 249 -  4500979 I

a score=0.000000
s ce10.chrX             4643605 530 + 17718866  
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598 721 + 21540570 I
e caeSp111.Scaffold622   302970 554 +   386604 I
e caeRem4.Crem_Contig0  1571026 249 -  4500979 I

a score=3390.000000
s ce10.chrX             4644135 83 + 17718866 AAAAAGGAACTCGACAACTTAATTGAAGCAGAATTAATACGTCGGA----------------AAAAAGTCCAAGTTTTTCACGTTCCACGGAGCATTAT
s caeRem4.Crem_Contig0  1571275 92 -  4500979 AAAAAGGAACTCAACGTCTCAAACGAAGCAGAATTAATAATTTGCACTTGAACTGCTtacacaaaaag-------ttttcacgtTCGATTGAGcattat
i caeRem4.Crem_Contig0  I 249 I 178
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598 721 + 21540570 I
e caeSp111.Scaffold622   302970 554 +   386604 I

a score=0.000000
s ce10.chrX             4644218 3142 + 17718866  
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9979598  721 + 21540570 I
e caeSp111.Scaffold622   302970  554 +   386604 I
e caeRem4.Crem_Contig0  1571367  178 -  4500979 I

a score=3492.000000
s ce10.chrX             4647360 117 + 17718866 ACTTGACAACTTAATCGAAGCAGAATTAATACTCCAAAAAAAAAT---CTCTAAAATAGTCTTCCACGTTTCACAGAGCATTAGTGGCACAATATTGAGTAGCAAATTGTTGCTATCAAA
s cb4.chrX              9980319 113 + 21540570 ACTCGGCGTTTTAATTCAAGCAGAATTAATATTCTGCAAGTacttttcctccaaaaaag-CGTTCACGTTCCACTGAGcattactgaaaaaata------agtaaaTGATTTTTCTCAAG
i cb4.chrX              I 721 I 19
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e caeSp111.Scaffold622   302970 554 +   386604 I
e caeRem4.Crem_Contig0  1571367 178 -  4500979 I

a score=0.000000
s ce10.chrX             4647477 4 + 17718866 AAAG
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e cb4.chrX              9980432 19 + 21540570 I
e caeSp111.Scaffold622   302970 554 +   386604 I
e caeRem4.Crem_Contig0  1571367 178 -  4500979 I

a score=447.000000
s ce10.chrX             4647481 61 + 17718866 GGAAAACGGGCtaatttaataattattttatt--CCACAGCTTAATA------AAAACAACAT---------ATAACA
s cb4.chrX              9980451 72 + 21540570 aaaaaagggGCTA------TAAATGTTTTATTATCTGTAATTTTGTATTTGAGGTAACAATATTAATCGGTTATAATA
i cb4.chrX              I 19 C 0
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e caeSp111.Scaffold622   302970 554 +   386604 I
e caeRem4.Crem_Contig0  1571367 178 -  4500979 I

a score=195.000000
s ce10.chrX             4647542 11 + 17718866 AGTATACTCTA
s cb4.chrX              9980523  7 + 21540570 ----AGTTAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1571545 11 -  4500979 AGTGTGTTATA
i caeRem4.Crem_Contig0  I 178 C 0
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I
e caeSp111.Scaffold622   302970 554 +   386604 I

a score=43.000000
s ce10.chrX             4647553 11 + 17718866 ATGCTAT------------AAAT--
s cb4.chrX              9980530 25 + 21540570 ATGCATTTCacagaagagaaaatga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1571556 17 -  4500979 ATGCagt------aaataaaaat--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   303524 11 +   386604 ATGcaat------------aaat--
i caeSp111.Scaffold622  I 554 C 0
e caePb3.Scfld02_0      2900879 1480 +  4147112 I
e caeJap4.Scaffold17934   23782 4752 +   591668 I

a score=1820.000000
s ce10.chrX             4647564 2 + 17718866 AT
s cb4.chrX              9980555 2 + 21540570 at
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0  1571573 2 -  4500979 at
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold622   303535 2 +   386604 at
i caeSp111.Scaffold622  C 0 I 13
s caeJap4.Scaffold17934   28534 2 +   591668 AT
i caeJap4.Scaffold17934 I 4752 C 0
e caePb3.Scfld02_0      2900879 1480 +  4147112 I

a score=107461.000000
s ce10.chrX             4647566 151 + 17718866 TTATAAGATACTTGGCTTGTCCACGAAGTGCTCAATAACAACGGCCCACAGGCCACCGGTGAGAAGGCCAACCATAAGAGTGCAAACGGAAAGCTGAGCGGCAAATCTTGAGTAGTGAGATGGCACGACGCTAAAAA-TTTAAAGATTTCCA----
s cb4.chrX              9980579 142 + 21540570 TTAGAAGATGTTAGGTTTGCCGATCAAGTTCTCAATGAGGACGGCCCACAATCCTCCGGTGAGAAGACCGATCATGAGGGTGCAGACAGAGAGTTGGGCGGCAAATCGAGAATAATGGGATGGAACGacgctgaaaa-ataga-------------
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0  1571591 152 -  4500979 TTAGAAGATTTGTGGCTTGTCCACCATATTCTCGATGAGCACAGCCCACAATCCACCGGTAAGAAGGCCAACCATAAGAGTGCAAACAGAGAGTTGAGCAGCGAATCGGGAGTAGTGGGACGGAACaacactgaaaatatagaGATTACTTG----
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold622   303550 151 +   386604 TTAGAAAATATCTGGTTTGTCCACCAAATTCTCGATGAGAACGGCCCACAATCCTCCGGTAAGAAGTCCAACCATAAGAGTACAGACAGAGAGCTGAGCAGCAAATCTTGAGTAGTGAGATGGGACGACACTAAAAg-ataacttctttttt----
i caeSp111.Scaffold622  I 13 C 0
s caePb3.Scfld02_0      2902359 145 +  4147112 TTAGAAGATATTCGGTTTATCGACCACATTCTCGATGATCACGGCCCACAATCCACCGGTGAGAAGTCCAATCATGAGGACACAAACGGAGAGTTGGGCGGCGAAGCGTGAGTAGTGAGACGGAACGACACTGAAAA-ACA------TCATT----
i caePb3.Scfld02_0      I 1480 C 0
s caeJap4.Scaffold17934   28536 155 +   591668 TTATATTTGATCAGGTCTGTCGACCAAATTCTCGATAACCACAGCCCACAATCCACCAGTGAGAAGACCGACCATCAAAGTGCACACGGACAGCTGCGCGGCAAAACGGGAATAATGCGAGGGGGCTTCACTGGAAT-TTCATTTCACTATTTCCA
i caeJap4.Scaffold17934 C 0 I 453

a score=-4914.000000
s ce10.chrX             4647717 23 + 17718866 ATTTCATAGTAACAACCGAATTG
s cb4.chrX              9980721 23 + 21540570 aataagcAATTTCATAACAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1571743 23 -  4500979 AAtaagataaaaaagaaaatttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   303701 18 +   386604 tgagaactga-----GAAGAGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2902504 23 +  4147112 AGGCAATTGAACCATACAGGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   28691 453 +   591668 I

a score=147466.000000
s ce10.chrX             4647740 225 + 17718866 TAACTC-ACTTTGGAGTGTATCCCATTGCCAGAGCGCTGAGGTATCCATGTGAAAAAGACATGGCAATTCCACCAATCACAAAAATGTCAGTA---------------------------------------------------GACTCAAAGAAAACAGGATAAGCACGCGTCTGGACACGATAGTTGCAGAAGAAGAAGAATGGAATGAAAAGAGCACGCAAGATTATGGCAAATTTGAGGTAACGGGGTGTCGGCTGCAA--ATTTGTATGATATT
s cb4.chrX              9980744 227 + 21540570 TTCTTC-ACTTTGGAGTATATCCCATTGCCAATGCACTCAAGTAACCATGCGAAAGAGACATCAGGATTCCAGAACCAACAAAAATGTCCGTA---------------------------------------------------TTGTCGAAGAAGACTGGATAGGCGCGAGTCTCAACACGATAGTTGCAGAAGAAGAACACCGGAATGAAGAGGGCACGAGCGATAATTGCAAGAGAGAGATATCTTGGAGTTGGCTGGAAAGAATCCAGTGTTAGT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0  1571766 222 -  4500979 taaCTT-ACTTTGGAGTGTATCCCATAGCCAATGCGCTCAGGTAACCGTGAGAGAAAGACATGAGAATTccagcaacaacaaaaatgtcgGTG---------------------------------------------------CTGTCGAAAAGAACTGGGTAGGCacgggtctcgacacgatagttgcagaagaagaagaccggGATAAAGAATGCACGAGCGACGATTGCCACGAAGAGGTATCTTGGAGTAGGCTAAAAACAGATAAAT-----C
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622   303719 224 +   386604 TTATCA-ACCTTGGCGTGTAACCCATCGCAAGTGCACTCAGGTAACCATGTGAGAACGACATGGCGATTCCAGCAATCACAAAAATGTCCGTG---------------------------------------------------ttatcaaagaaaactgGATAGGCACGGGTCTCAACACGATAGttgcagaagaagaagattggGATGAAGAGGGCACGAGCAATGATAGCTAGTGAAAGGTATCGGGGTGTTGGCTGAA---AGTTATATGTTTTT
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0      2902527 225 +  4147112 TCAGTATACCTTGGAGTATATCCCATGGCAAGTGCACTCAAGTAACCGTGTGTGAAGGACATGGTGATTCCAGCAATGACAAAGATGTCGGTG---------------------------------------------------TTGTCGAAGAAGACTGGGAATGCACGGGTCTCAACACGGTAGttacagaagaagaagattgggATGAAGGCAGCACGAGCGATGATAGCCAACGAGAGGAATCTTGGGGttggctgaa---aattcgaagttAAA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   29144 275 +   591668 TATCTT-ACCTAGGAGTATATCCCATGGCCAAAGCGCTCAAATACCCATGTGAAAGAGACATGACAATGCCGGCAAACACAAAAACATCAGTGCCTGAAATgtcattatttatttaaaagtgAGGAAAACGGTATGCTCACTTACTTTCAaagaaaacaggaaaaatgcGATCATCGGCACGGtagttgcaaaaaaagaagattggGATCAGAATAGCCCGTCCAACAATTGCGAACTTTAGATATTTTGGTGTGGgctgaaaacattttaatttc---
i caeJap4.Scaffold17934 I 453 C 0

a score=-7093.000000
s ce10.chrX             4647965 26 + 17718866 -CAAGCAATGTTATTTCTGAATTTCAA
s cb4.chrX              9980975 16 + 21540570 -AGAAGAA----------GCATTAAAT
i cb4.chrX              I 4 I 4
s caeRem4.Crem_Contig0  1571992 17 -  4500979 -TGAGAAC---------TGAAATCAAT
i caeRem4.Crem_Contig0  I 4 I 4
s caePb3.Scfld02_0      2902762 16 +  4147112 -TGATAAA-------CCTGGATTC---
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   29419 21 +   591668 aCGACCAAACTATCTTCTCAA------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622   303943 18 +   386604 I

a score=547579.000000
s ce10.chrX             4647991 812 + 17718866  
s cb4.chrX              9980995 823 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1572013 805 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   303961 803 +   386604  
i caeSp111.Scaffold622  I 18 C 0
s caePb3.Scfld02_0      2902778 931 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   29440 815 +   591668  
i caeJap4.Scaffold17934 C 0 I 2261

a score=-27107.000000
s ce10.chrX             4648803  22 + 17718866 ATT-------------------------------------------------------------------------------GATTGATTT---------TTGA----------------------------GAGTTT
s cb4.chrX              9981818 100 + 21540570 gtt----------------------tttttcaaagcagGCGAAAT----------------TTTTACGGTTAAGGGTGAGGTGGTTAATTTGAGATAAGAATCCTGCTTGATTGCACAAAACTAGGAaagcaaaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1572818  10 -  4500979 ATT-------------------------------------------------------------------------------------------------ATCC-------------------------------CTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   304764  28 +   386604 gtt----------------------------------------------------------ctcttAAACTGT---------CGTGGATTT---------CTCT----------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2903709 122 +  4147112 GTTGGGATGAGCGTACTGAAGTTGCGCTGCCTAAGTAGTCGGACTCAAATTTGGTAGTAAGCTTTTCAACTACTAGCG----CGTTAATTT---------CTTCCTGTTATGTGTAAAAGCT---ACAAGCAACATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   30255 2261 +   591668 I

a score=101336.000000
s ce10.chrX             4648825 160 + 17718866 AGAAGAACTGT------------------------------------------------------------AACTTACGCAATAATGAGGAACAGGTTGAAAACATTAATGCTTGCGTTTGGAAGTTGTGAGGCAATCGTCAAAGATCCCATGAATTCTTTCGAATACCATGTCTCCACGCCATCCGGTTTGAACCAATAATTCACATAATACTGAA--ACA
s cb4.chrX              9981918 220 + 21540570 aaaaaaaatcaagcacATGAGCTTCAACATCGTTAGGAAGTTATCATTCTCTGGATAATTCTCTGAACCTGTACTCACGCGATGATAAGAAACAAGTTAAACACGTTGATGGCGGCGTTTGGAAGTTGCGAGGCGATGGTCAACGATCCCATGAACTCCTTCGAGTACCATGTCTCCTCTCCGTCCTGTTTGAACCAGTAGTTGACGTAGTACTAAA--ACA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0  1572828 170 -  4500979 AAGAAATATTA-------------------------------------TTATAGACA-----------CTTTACTTACGCAAGGATAAGAAATAGGTTGAACACATTGATGGTGGCGTTTGGAAGTTGCGATGCAATGGTCAACGATCCCATGAACTCCTTGGAATACCATGTCTCCTCGCCGTTCTGCTTGAACCAGTAGTTGACGTagtactgaa--a--
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold622   304792 146 +   386604 -----------------------------------------------------------------------TACTCACGCAATGATAATGAAGAGGTTGACCACGTTGATTGACGCATTCGGGAGTTGAGATGCGATGGTCAATCCTCCCATGAACTCTTTTGAATACCACGTCTCTTGACCGTCTTGTTTGAACCAGTAGTTGACGtaatactgaa-----
i caeSp111.Scaffold622  C 0 I 29
s caePb3.Scfld02_0      2903831 207 +  4147112 AAAAGAATTCA---------GACTGATTGCAAGCATAATTTGTCCATGAAGCAAACAATATCATG---GTACACTCACgcaatgatgatgaagaggttAGCAATATTGATAGCAGCATTCGGAAGCTGAGAAGCGATGGTCAATGATCCCATGAACTCTTTGGAGTACCAAGTCTCTTCGCCGTTTTGTTTGAACCAGTAGTTGACGTAgtactgaaaa---
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17934   32516 152 +   591668 aaaaaaaattt------------------------------------------------------------aactcACGCAATTATTAGGAAAAGATTGAACACATTAATGGAGACATTGGGAAGTTGGGAAGCAATTGTCAGTGCACCCATAAACTCTTTTGAAAACCAAGTCTCTTTGCCGGATGGTTTGAACCAGTAGTTGACATAGTA----------
i caeJap4.Scaffold17934 I 2261 C 0

a score=0.000000
s ce10.chrX             4648985 25 + 17718866 GGAACTCTATTAGTGAAAATTATCT
e caePb3.Scfld02_0      2904038 33 +  4147112 I
e caeJap4.Scaffold17934   32668  0 +   591668 C
e cb4.chrX              9982138 33 + 21540570 I
e caeSp111.Scaffold622   304938 29 +   386604 I
e caeRem4.Crem_Contig0  1572998 29 -  4500979 I

a score=81110.000000
s ce10.chrX             4649010  96 + 17718866 AGTTGCAA-----ACCTCAGGGGCGATAGTAATGAACATATTCCATGGCAGAAGAACTCCGAATCCAACAAGAATGACGAGCCAGTAGACAATATTGTACT
s cb4.chrX              9982171 101 + 21540570 AACTGCAAATTATACCTCTGGAGCAATGGTGATAAACATGTTCCACGGGAGAAGGACACCGAAACCGACAAGGATGACGAGCCAGTAGACGATGTTGAATT
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0  1573027  96 -  4500979 -----tttttcttaccTCTGGAGATATTGTGATGAACATGTTCCACGGAAGAAGGACTCCGAATCCGACAAGAACAACGAGCCAGTAGACGATGTTAAGTT
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold622   304967  94 +   386604 -------AATCTAACCTCGGGAGAGATGGTAATGAACATGTTCCACGGGAGAAGAACTCCAAATCCAACAAGAATGACGAGCCAGTAGACGATATTGAATT
i caeSp111.Scaffold622  I 29 C 0
s caePb3.Scfld02_0      2904071  93 +  4147112 --------ATGTTACCTCCGGAGAAATGGTAATGAACATGTTCCATGGCAGAAGAACTCCAAAGCCGACAAGAATGACGAGCCAGTAGACGATGTTGAATT
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17934   32668  86 +   591668 ---------------TTCTGGTGCAATCGTAATGAACATATTCCACGGAAGGAGAACTCCAAAACCAACCAGAATGACAAGATAGTAAACTATATTGAAct
i caeJap4.Scaffold17934 C 0 I 428

a score=-3728.000000
s ce10.chrX             4649106 109 + 17718866 TGTCTCTTGGAAATGCTTCCTGCTCAACGGCATAGGTGTTCGATCGGTTGATTATTACCAT---TTCCTGTAGACAAGACATAACTTTTAATGAAC--TAAAATGAACGAAAAG----------------
s cb4.chrX              9982272 110 + 21540570 TGTCCTCAGGTGCGACATCCGGGTCGACAAAGTAGGTGTTTCGACGAGTG---ACAACCATAATTTCCC------CTGACAGAAAACGA---------TGATCTT--TAGAAAGTAAAACTTGTGAATag
i cb4.chrX              C 0 I 2081
s caeRem4.Crem_Contig0  1573123  89 -  4500979 TGTCCTCTGGAGCTTTGTCCTGCTCAACAACGTAGGTGTTTGAATGACTGCTTAcagccat--ttttct------gaaattgaaa-----------------------aaaaaggaatac----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   305061 112 +   386604 TGTCTTTTGGGGCAG---TCTGATCGACAGTATATGTTTCCGAACGACTCATAACCACCat---cttct------aaaaattatttttttttgaattgtgtTTTCGGTAGAGAATGATA-----AAATC-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2904164 113 +  4147112 TGTCTTTGGGAGCCG---CTTGATCGACCATGTAAGTCTTAGAACGACTCAATCCCACCAT--ACTTCTGG----AAGAATGAAGTTTGTTT------TGATATTACTGAAACGCGATAT-AACAAATT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   32754 428 +   591668 I

a score=-4623.000000
s ce10.chrX             4649215 51 + 17718866 GCAG-----CCAGAC-AAGAAATAAAAAATTG------GAAAATGATGTGAAAATGA--AAACGA------
s caeRem4.Crem_Contig0  1573212 52 -  4500979 gTAG-----CATTAC-AGca---agaaaactc------aaaaaggaCT----GCTAGCATAACAACTGGca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   305173 52 +   386604 GTGATGCTGacagac-aaaa---aagaggatgatgccaaaaaagg---------tgaccaaacga------
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0      2904277 40 +  4147112 ATAA-----ACaaacgaaga---aagaagatg------aaaagag---------tAA--AAACGA------
i caePb3.Scfld02_0      C 0 I 937
e caeJap4.Scaffold17934   32754 428 +   591668 I
e cb4.chrX              9982382 2081 + 21540570 I

a score=498.000000
s ce10.chrX             4649266 21 + 17718866 ACGCAATAA---TGAAAGACAAAG
s caeRem4.Crem_Contig0  1573264 21 -  4500979 aaggaagaa---agaaattgaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   305236 21 +   386604 ---GAACAGTCTAGAAAGACAAGG
i caeSp111.Scaffold622  I 11 I 757
e caePb3.Scfld02_0      2904317 937 +  4147112 I
e caeJap4.Scaffold17934   32754 428 +   591668 I
e cb4.chrX              9982382 2081 + 21540570 I

a score=1525.000000
s ce10.chrX             4649287 117 + 17718866 ACGCTAGAAGATTGAATGTAAATGGCACATCAAGAGACACCAA-------AGAACAACAACGCGCAAAAAATTG-GCGGACATTATCGGAGGTCAAAAAGTAACTGTCCACAGGGCGCACTTTCA
s caeRem4.Crem_Contig0  1573285 124 -  4500979 aaaatgaaaggtaGAATGAGTCTGGAGTACGAATGAACACTGGCCGTCCTCGGACCACACTGCGTACAATTTTGCGCGGA-ATACATGGTGGTCAAAACAGTATTCTCGATAGAGCGCACCTCCA
i caeRem4.Crem_Contig0  C 0 I 936
e caePb3.Scfld02_0      2904317 937 +  4147112 I
e caeJap4.Scaffold17934   32754 428 +   591668 I
e cb4.chrX              9982382 2081 + 21540570 I
e caeSp111.Scaffold622   305257 757 +   386604 I

a score=0.000000
s ce10.chrX             4649404 1986 + 17718866  
e caePb3.Scfld02_0      2904317  937 +  4147112 I
e caeJap4.Scaffold17934   32754  428 +   591668 I
e cb4.chrX              9982382 2081 + 21540570 I
e caeSp111.Scaffold622   305257  757 +   386604 I
e caeRem4.Crem_Contig0  1573409  936 -  4500979 I

a score=273.000000
s ce10.chrX             4651390 3 + 17718866 AAA
s caeJap4.Scaffold17934   33182 3 +   591668 aaa
i caeJap4.Scaffold17934 I 428 C 0
e caePb3.Scfld02_0      2904317 937 +  4147112 I
e cb4.chrX              9982382 2081 + 21540570 I
e caeSp111.Scaffold622   305257 757 +   386604 I
e caeRem4.Crem_Contig0  1573409 936 -  4500979 I

a score=730.000000
s ce10.chrX             4651393 24 + 17718866 CCACATTTTTTT------GTGCTGCCCTCC
s caePb3.Scfld02_0      2905254 30 +  4147112 ccacacttttttctccaaatgttAATCTCT
i caePb3.Scfld02_0      I 937 I 6
s caeJap4.Scaffold17934   33185 15 +   591668 --acacattttc-------------ccCCC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9982382 2081 + 21540570 I
e caeSp111.Scaffold622   305257 757 +   386604 I
e caeRem4.Crem_Contig0  1573409 936 -  4500979 I

a score=-471.000000
s ce10.chrX             4651417 2 + 17718866 AT
s caeRem4.Crem_Contig0  1574345 2 -  4500979 AT
i caeRem4.Crem_Contig0  I 936 C 0
s caePb3.Scfld02_0      2905290 2 +  4147112 AT
i caePb3.Scfld02_0      I 6 I 1
s caeJap4.Scaffold17934   33200 1 +   591668 A-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9982382 2081 + 21540570 I
e caeSp111.Scaffold622   305257 757 +   386604 I

a score=7439.000000
s ce10.chrX             4651419 12 + 17718866 GAAATCCCTCAA
s caeRem4.Crem_Contig0  1574347 12 -  4500979 GAAATCCCTCAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622   306014 12 +   386604 GAAACCCCTCAC
i caeSp111.Scaffold622  I 757 I 3
s caePb3.Scfld02_0      2905293 12 +  4147112 GAAACCCCtcaa
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold17934   33201 11 +   591668 -AGTTCCCTTAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9982382 2081 + 21540570 I

a score=319118.000000
s ce10.chrX             4651431 520 + 17718866  
s cb4.chrX              9984463 521 + 21540570  
i cb4.chrX              I 2081 C 0
s caeRem4.Crem_Contig0  1574362 505 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622   306029 506 +   386604  
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0      2905308 511 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   33212 472 +   591668  
i caeJap4.Scaffold17934 C 0 I 332

a score=-31212.000000
s ce10.chrX             4651951 173 + 17718866 GTATCGAAATAATCAAGT-------CCCAGT-AAAATAATTGATTTTTC---------------CAGATCCCGGTGACATTGTTGGGAGTT--CAAT-----AATCATCTCAAGACTACTGGTACAGCTTTCACA-ATTCAGGCAATTCAGCGACAATGATG---------CAGCTGTGAAA---ATCGTTCGG-------GGTCTCCACCACCATTGCCAAC
s cb4.chrX              9984984 123 + 21540570 -------TTTCA---AGA-------CATTGATTTGAAAATCCCTCCATT----------------GAAT--------------TTCAATCCATCAAC------------CCA--ACTACTTTTTCAATAGGTCAGTATTAAACCAATTTCA-AAGGAAAATG---------------------CAGCTGTTAAAAGAAAAGG-----------------AAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1574867 176 -  4500979 GTACTGATTTCATTTGGATCTTCTTcattaa-ttgaaaatcaatccgtttt-------------caaattc-----ctctttcttctaattttcgac------------tcgatattgttttttcttcaaataaa-acttaaccaatttaa-aaataaaacggATTTGGAGCAGCTGTTGCTAGAGttgttaaaataaaaaa--------------cccCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   306535 181 +   386604 CTACTGAAtcaattcaga-------attaaa-atCAGTCTTGCTTTATTTCAAATGACATACTGCTATTTC-----ACActtgttccattt--ttat-----tat-atGTCA--CCAACTCTTTCGATTTGTGCA-ACTAAACcaattgag-aaaaacgatG---------CAGCTGTGAGT--ATTTGTTAGGCGTTGACGATCTTTTT------CCGAAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2905819 152 +  4147112 CTACGgaattgatc--ac-------ttttca-atCGGAAATCATTTATCcc-------------cgaattc-----atttttttgccattC--CAACCAAAGTAG-ATGACA--AC----------ACTGGTATT-ACTAAAccaattgag-aaaaacgatG---------CAGCTGTGATT---TTTGTTAG--------GGTTTCTTC------TCAAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   33684 332 +   591668 I

a score=26734.000000
s ce10.chrX             4652124 30 + 17718866 CTTCCCAAAGTC---------GTTTATTCAAATGTT-----GAG
s cb4.chrX              9985107 35 + 21540570 CTTCCCAAAGTC---------GTTTATTCAAATGTTTGGTGGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1575043 29 -  4500979 CTTCCCAAAGTC---------GTTTATTCAAATGTTG------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   306716 31 +   386604 CTTCCCAAAGTC---------GTTTATTCAAATGTTG----ACg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2905971 39 +  4147112 CTTCCCAAAGTCGTTTATTCAGTTTATTCAAATGTT-----AGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   34016 30 +   591668 cttcccaAAGTC---------GTTTATTCAAATGTC-----GAG
i caeJap4.Scaffold17934 I 332 I 131

a score=2402.000000
s ce10.chrX             4652154 14 + 17718866 CGCCTCGATAAAAA
s cb4.chrX              9985142 14 + 21540570 AATGCAAGGGAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1575072 14 -  4500979 AGCGACGaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   306747 14 +   386604 gacaaagaagaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906010 14 +  4147112 GACTACGAAGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34046 131 +   591668 I

a score=74937.000000
s ce10.chrX             4652168 114 + 17718866 CATCCGG-CAGTAGATAT-TTGAATTTTTATGCGG---TATCATATTTATCTGAATAATGTGACCAATTCGTCACTTCTCACTTTGATGTG-AGCCGAGATTC-----ACAACGACCGGATGATG
s cb4.chrX              9985156  97 + 21540570 CATCCgg-----agatat-ttgaattt----------------tatttatttgaatAACGCCATCAATTCTTCACT------TTTGATGTGAAGCcgagaaacgagagaaaacGGCCGGATGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1575086 107 -  4500979 CATCCGG-CGGTagatat-ttgaatttttatgaga---TATCATATCTATCTGAATAATGTGACCCATTCTTCAC-------TTTGATGTG-AGCCGAGATTC-----AGAACGACCGAATGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   306761 107 +   386604 catccGG-GTGAAGacat-tcgaatttttatgCGG---TATCATATTTATCTGAATAATGTGgccaatttttcac-------tttgatGTG-AGCCGAGATTC-----AAAACGACCGGATGCTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906024 108 +  4147112 CATCCGGCGGGtagatat-ttgaaattttatgtgg---tatcatatttatttgaataatgTGACCAATCCCTCAC-------TTTGATGTG-AGCCGAGATTC-----AAAACGACCGGATGATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   34177 106 +   591668 CATCCGG-TGGTAAAAATATTGGCAGTTTATGCGAGATCATCATATTCAGAATGGTAATGGTGTCAATTCTTCAC-------TTTGATGTG-AGCCGAGAATC-----A-----GCTGGATGACG
i caeJap4.Scaffold17934 I 131 I 791

a score=-3498.000000
s ce10.chrX             4652282 13 + 17718866 GAAATTGCATT--------TT
s cb4.chrX              9985253 13 + 21540570 ---AG---ATTGAGGtttt--
i cb4.chrX              C 0 I 195
s caeRem4.Crem_Contig0  1575193  5 -  4500979 ---AT---ATT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   306868  8 +   386604 ---ATGGCATT----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906132  8 +  4147112 ---ATGGCATT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I

a score=-15445.000000
s ce10.chrX             4652295 185 + 17718866 ----GAAGttaaaaaataaatg---ttttttatgaaaagttttattttattttaaGAAGCTGATCACTGCACTTTCATTGTGCGGCAATGGCCAAATATCACTACAAAACAAATCAAATTTCTTGAAAAACTAATTGAAAATCACTCAGTTTTCATCCTTCTGGAAACCGAACAATACTTTT--ATCTGAAAAA
s caeRem4.Crem_Contig0  1575198 120 -  4500979 GAATTGGGcgagaagtttgaaa---attgc--------tttttattTAGTTGTAAC---------------------------------------CTATcact--aaaaaaaatcaaatt------gtgaaaaactgGAAC--------GTTTGATTTATAGGAAA------CTGTTCTATT--ATGTATAAAA
i caeRem4.Crem_Contig0  C 0 I 90
s caeSp111.Scaffold622   306876 120 +   386604 GAATTGAATCAACTCTTCAGAA---ACTCATCGAAC--TTTTTATATTGCTACACT---------------------------------------GTAAgatc--tgaacttttttgatg------agtCGCATCGGAA------------TTCTCTCCGATGATa----------tcgaatgaatttttcaga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906140 122 +  4147112 GAATAAAGTTAAATATTGAATACTGGTTTCTTGAATGGGTTTTATTGTGTCTCGAG---------------------------------------ATTCCATT--TGAAACTCTTCATTC------GAAAGTTTCTGGA-------------TAACTCCTCTGAAA----------TTTGAT--ATATTTCAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I
e cb4.chrX              9985266 195 + 21540570 I

a score=-5334.000000
s ce10.chrX             4652480 97 + 17718866 TGTAGAGGATTTGTACAGTAGGCAAGTGACCAAAACTTTGGCTGAAAATTTTCTGACAATCTTGAAAAGTTTTGATGTTCATAATTAGGCATACTGT
s caeSp111.Scaffold622   306996 34 +   386604 cataga----------------------------------------aatttttc------------aaatttgaacaT---CAAAGACG--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906262 54 +  4147112 T-TAGCTTGTT------------------------------CTCATTACTTTTT------------ACGTTTTGTCGTTCACAAGAAAGCTTCCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I
e cb4.chrX              9985266 195 + 21540570 I
e caeRem4.Crem_Contig0  1575318 90 -  4500979 I

a score=-33125.000000
s ce10.chrX             4652577 301 + 17718866 ATCTTCGACTATTGTTAATG----TTTCCATGAAAAACCACATTGACAATACTTTTTTAAAAAGTTGAATTCAAGCAGCAATGCAATATTTGCCGTATCCTGATCTACTGTATTTCCTCTATTGCACCCGATTAATG-------------TACTTTGAAAGGCTCTATCtcggctgacaacatttgaataaaacatacaacaactgataagctgccaaagttgaacaatggggtgaaacactaataTAATATATTCAAAAACTCAAACTCGACCTTAGAATGT-ACAAATCTATATACATTTATTACTATAATGTGCAT
s caeRem4.Crem_Contig0  1575408 173 -  4500979 acCCCAGACAACTAttaatcaacattttcatg---------attt-cagaaattcactAATGACTT---------CTACACAAGAAAATTACAT-----CA---TCATTTCATTATCCGTTTAG-----TATTAGta-------------tttttcga--------------------------gaaacaaGATG------AATTGC--------------------------------------GTAGTAAGTTCTA----------------TTGT--TGGGATAAGTGTATTT---CCT----------TTTACAT
i caeRem4.Crem_Contig0  I 90 C 0
s caeSp111.Scaffold622   307030 137 +   386604 ---------TGACTCTGACC---------------------------CGCACACCcctta-------------------aaaacaaaattccaCATATGTA------------------TTTAAAGATATATTAATc-------------tattttga--------------------------tgaattgaaaa----agaaacgc--------------------------------------gTAATAGGTCCTA----------------TTGTAATAG-ATAAGTGTATTT---TCT-------T-ATATGCAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906316 218 +  4147112 --AACAGATTGGCTGTGATCAC-------------------ATTG-TAGCAAGCCTTTCAAAGCTT----------TGCAAGAGAAAGTTTTCTATAGTTG---CCGCTCTGTCACC--TTGAGAACTAAAGTGGTCCTAACAAAGACCGTAGTACAA--------------------------CCGACAGATAG-GCTATAAACGCCAGG-----AAAATCAAAT------------TAGTCTTttaatatttccaa----------------aaagaattgCGTAGTTGTATCT---TTTGTTGCGAT-AAGTGCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I
e cb4.chrX              9985266 195 + 21540570 I

a score=26106.000000
s ce10.chrX             4652878  96 + 17718866 TGCATGGCCTAATTGAA-----TGATGAAGG----------CGCTTTTTCATCTAAACTCT----------ATTCAGAACAACTAATAAT-------------GTGAACAGGC--TCGATTACTTTCGAGAAGTGC
s cb4.chrX              9985461 118 + 21540570 TGCATTTCCTTATTCAC--ATCTCATCAAAG----------CGCCTCTTCA--TAAAATCTGACATATATTATTCCGAATAAC---CAATACGACTAATTGCAGTAAATATGT-GTCGATTACTATTAAGAAGCGC
i cb4.chrX              I 195 C 0
s caeRem4.Crem_Contig0  1575581  99 -  4500979 ---------------------CTCATCAACC----------CGccttttcaattgaaatctgGCACATA-----CACAATAACTAATAATACCACTAATTGAAGTGAATATGT-CTCGATTACTCTTGAGAAGTAC
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold622   307167 115 +   386604 ---------ATATTTCT--ATCTCATCAAAC----------TGCTTTTTCATGCAAAATCTGGCGcattttattcagaataacTAATAATACGActaattgaaatgaatatgCTTTCGATTACTCTTGAGAAATAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906534 120 +  4147112 ---------TTCCTTATAAATCTCatcaaactcaattttcattcatttccattcAAAGTCGGGCACATATAATAGAGAGTAACTAAT------ACTAATTGAAGTGAATATTC-TTCGATTACTCTTAAGAAGTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I

a score=-3029.000000
s ce10.chrX             4652974 3 + 17718866 --------AGA
s cb4.chrX              9985579 1 + 21540570 -G---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   307282 8 +   386604 TGCTCAGC---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906654 2 +  4147112 TG---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I
e caeRem4.Crem_Contig0  1575680 21 -  4500979 I

a score=77631.000000
s ce10.chrX             4652977 420 + 17718866  
s cb4.chrX              9985580 370 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1575701 406 -  4500979  
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold622   307290 429 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2906656 412 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   34283 791 +   591668 I

a score=344959.000000
s ce10.chrX             4653397 897 + 17718866  
s cb4.chrX              9985950 884 + 21540570  
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig0  1576107 908 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   307719 854 +   386604  
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2907068 868 +  4147112  
i caePb3.Scfld02_0      C 0 I 136
s caeJap4.Scaffold17934   35074 777 +   591668  
i caeJap4.Scaffold17934 I 791 C 0

a score=0.000000
s ce10.chrX             4654294 6 + 17718866 TTTTGG
e caePb3.Scfld02_0      2907936 136 +  4147112 I
e caeJap4.Scaffold17934   35851 0 +   591668 C
e cb4.chrX              9986834 60 + 21540570 I
e caeSp111.Scaffold622   308573 5 +   386604 I
e caeRem4.Crem_Contig0  1577015 0 -  4500979 C

a score=-10312.000000
s ce10.chrX             4654300 77 + 17718866 TTAAGGCAG-----------------------TAAAAATTGAAAATGTGAGT--GTGTTTGGTTTTATTAAAAAGTAGCACGCTGGCGTTTACAACAGCTGG
s caeRem4.Crem_Contig0  1577015 20 -  4500979 --------------------------------ttaagAGTAAAAATaactct--------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308578 19 +   386604 -----------------------------------AGGTCCCAAATGAGagtcg------------------------------------------------
i caeSp111.Scaffold622  I 5 C 0
s caeJap4.Scaffold17934   35851 50 +   591668 --AGGGCaacaaaacgggaaaaaaaagactGCTTTGGGTTCAAAATGAAAAG--------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2907936 136 +  4147112 I
e cb4.chrX              9986834 60 + 21540570 I

a score=-4744.000000
s ce10.chrX             4654377 52 + 17718866 TTTTGTTTGTTAACAGGAATGATACTTGCGGGACCCGTAATAGGTGACTTCA
s cb4.chrX              9986894 27 + 21540570 -ttttgttctTAAAAGGACTGaca--------------aata----------
i cb4.chrX              I 60 C 0
s caeSp111.Scaffold622   308597 23 +   386604 ttttttttgggaaaaggGCAAGA-----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934   35901 28 +   591668 --------ATTAAAGGGAATGAA-----TGCTCACCATAAT-----------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2907936 136 +  4147112 I
e caeRem4.Crem_Contig0  1577035  0 -  4500979 C

a score=-34200.000000
s ce10.chrX             4654429 76 + 17718866 ATTTGTGAGGTTATATCTCGGTTCATTTTGAAGATGTCAATTGA-------TAATCTCTACT---AAACATAA------AATAAA----------TAATATA-----
s cb4.chrX              9986921 49 + 21540570 --------------at---------tttcgaaaatt---------------tgatgtCT------GAAGACAA---------AAATTTGTAGTACAGAACGA-----
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0  1577035 15 -  4500979 -------------------------ttttgaaa--------------------------------------------------------------tgaacCA-----
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold622   308620 19 +   386604 ---------------------------TCGA--------------------TGtttttt------------------------------------tGGTATG-----
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0      2908072 52 +  4147112 -------------------------ATTTGAAAGGACACATAAGTGAGAACTAATATCT------AAGCATGA---------GAG----------TGATACA-----
i caePb3.Scfld02_0      I 136 I 5
s caeJap4.Scaffold17934   35929 43 +   591668 ------------------------------------------------------TCACTACCCGGACGGACAACcgaccaaaaaa----------agaaagagtaTT
i caeJap4.Scaffold17934 C 0 C 0

a score=-7398.000000
s ce10.chrX             4654505 30 + 17718866 TGAAGAAAATACAAATATGTACTTTGTCAA
s caeRem4.Crem_Contig0  1577072  4 -  4500979 tcag--------------------------
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold622   308644  7 +   386604 TGAGAAA-----------------------
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0      2908129 22 +  4147112 TCAAGAGCAAACGA--------TTCGTCAA
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   35972  2 +   591668 TC----------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9986970 40 + 21540570 I

a score=-53965.000000
s ce10.chrX             4654535 119 + 17718866 TTGAAGATTTGTGGATATGTAAATTAAGAACTGATATATGATCTGTTGAATTTTAAAA-----AA----------TGGGGCA-TAGATATGATTACTCCTAACTCTAAAAATGTAAAATTTA-AATCACT-------TTG---CTG
s cb4.chrX              9987010  89 + 21540570 ttgatggttt-ttcgaattttgggcagaaac----------------taaagcaaaag-----aa----------aaag--------aagggcagaaactaaagcaaaag-----aaaTCTA-atctatt-------tt----caa
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0  1577076 110 -  4500979 CTGGTGA-------ACGTTTAGGTTAAAAAC----GTGTGA--TGTTGAAAgtataagtttttaa----------aaagtta-tcgAAATGGACAAGAAGATACTTAATG-----AGATCTAGAAACACT-------TTGCGACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308651  75 +   386604 -----------------------GTAATaa-----------------gcaaataaaaa-----aa----------gaaatca-----aatgttcaaaaa-----ctaaGA------AGTTGATATTTACTCTCAGATTTCTTAGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908151  76 +  4147112 ---------------------CTGTAAATA-----------------GGGAACACAGA-----AATTAGACATATGGAGTTA-----GATGTTCAAAAAT----CTAACA-----CAATCTATA-------------TTATTAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   35974  78 +   591668 ----------TCGACGGCTTTGAGTAAGGTC---AATCTgacgtttttaaattttttt-----ta----------tgagtGACCCAAAATGTAAATAACTGTGTCG----------------------------------------
i caeJap4.Scaffold17934 C 0 I 84

a score=-16922.000000
s ce10.chrX             4654654 77 + 17718866 TTTTGAAATCTCAAAAAACGA-----TCCTGGGAACAGTAACATATGATAAAACTTGATGGAATTTTCATACCTGATGAAAT
s cb4.chrX              9987099 81 + 21540570 tttaattacacctcgaaaaaacaatttcctaAAATTAAGAATATGCCATACATTTGAGCACTATCTTC-TCTTTAATGAAAT
i cb4.chrX              C 0 I 93
s caeRem4.Crem_Contig0  1577186 61 -  4500979 TTTTGAGGCA----GAATCaatcttttccattctttaATGTCATATTGTAGATATGAAAATTAGT-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308726 44 +   386604 TTTAGagacttttcaaaacaagGAACTTCCACATTT---------------TTATGGAA-----------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908227 23 +  4147112 -TTAGAGAAGCTTCAAAGC-----------------------------------TTAAG-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   36052 84 +   591668 I

a score=-1309.000000
s ce10.chrX             4654731 27 + 17718866 TCCAACAGTTATGGG---CATAGTTAAAAC
s caeRem4.Crem_Contig0  1577247 20 -  4500979 ---------TATCAAAATGATATTCAAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308770 26 +   386604 -ACAAGAAGTATTAG---CATGTTCGAAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908250 24 +  4147112 -AAAAGAAGTATCA----TATGGTCGAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   36052 84 +   591668 I
e cb4.chrX              9987180 93 + 21540570 I

a score=-13173.000000
s ce10.chrX             4654758 88 + 17718866 CACTGCCACAATAGTTTTTTCAAT----CAAGAAAAATCATCAAGAAATGAAACGCGACAAAAAACTCTCACG---AGAACCTATTGGATCGGGG
s caeRem4.Crem_Contig0  1577267 83 -  4500979 --TTGACACAA-CGTTTGAATTATACGGTGCAAAAAACGAAAGCGGAGATTGATGAG---ATAAACTCCTA-----GGATCCTATCGGATCGCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308796 74 +   386604 C-CTGATTCGA-AGTT--Atcaacatttgaaaataaac--------------atgtG---GAAAACCATTATTGACGAAATCTAGCCGATCGGTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908274 36 +  4147112 ----------------------------TACAATAAAT--------------------------ACTTTTA-----GAAACCTATCGGATcgctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   36136 65 +   591668 --------------------CACTGcaacaaaataatt------aaagaatGACGCGAAAGAAAAAGTGTAGA---AAAACCTATTGGATCGCA-
i caeJap4.Scaffold17934 I 84 C 0
e cb4.chrX              9987180 93 + 21540570 I

a score=193572.000000
s ce10.chrX             4654846 187 + 17718866 CTCAAAATCAAACTGACAG-CAGATGGGGTGGAGTCGGTGGGGTAGTTTTGATTGGGCAACGAAATCTGC--GGC---------GACTGCCGG---------------GGAGACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCTTCCAAACAACACTTGCGTAATAATTGCTTACTATATGAAAAT-ATGTTACGCCTCTTTCTCTT
s cb4.chrX              9987273 207 + 21540570 ttcaaaatcaaactGACAGCCAGATGGGGTGGAGTCGGT-GGGTAGCTTTGATTGGGCGACGAAATGTGCGGGGC-TGGAGCAAGAGCACCAGCTTCGGGGGAAGAAAG--GACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCTCCCAAACAACACTTGCGTAATAATTGCTTACTATAT-AAAAT-ATGTCACGCCTTCA-CTCT-
i cb4.chrX              I 93 C 0
s caeRem4.Crem_Contig0  1577350 187 -  4500979 TTTAAAATCAAACTGACAG-CAGAT-GGGTGGAGTCGGT-GGGTAGCTTTGATTGGGCGACGAAATGTGC--GGC-CTGGGC--GACTGCCAG---------------G--GACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCTTCCAAACAACACTTGCGTAATAATTGCTAACTATAT-AAAAC-ATGTCACGCCTCCATTTCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   308870 188 +   386604 -TCAAAATCAAACTGACAG-CAGATGGGGTGGAGTCGGT-GGGTAGCTTTGATTGGGCGACGAAATGTGC--GGG-CTGGAC--GAGTGCCAG---------------G--GACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCTTCCAAACAACACTTGCGTAATAATTGCTTACTATAT-AAAAT-ATGTCAcgcctctttctctt
i caeSp111.Scaffold622  C 0 I 20
s caePb3.Scfld02_0      2908310 187 +  4147112 -tcaaaatcaaactgaCAA-CAGAT-GGGTGGAGTCGGT-GGGTAGCTTTGATTGGGCGACAAAATGTGC--GGC-CTGGAC--GACAGCTAG---------------G--GACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCTTCCAAACAACACTTGCGTAATAATTGCTTACTATAT-AAAAT-ATGTCACGCctccatctctt
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   36201 190 +   591668 CTCAAAATCAAACTGGCAGATGGAT-GGGTGGAGTCGGT-GGGTAGCTTTGATTGGGCGACGAAATGTGC--GGCGTGGGAC--GGGTCCAGG---------------A--GACCCCATTCTTCGCCTCGTTGCTCATCTCATTTACAATCAATCGAACAACACTTGCGTAATAATTGCTTACTATAT-GAAACGATGTAACGCCTCCTTTCTT-
i caeJap4.Scaffold17934 C 0 C 0

a score=-8569.000000
s ce10.chrX             4655033 29 + 17718866 CGCTAACAACTACAAA-----------------CACA---AAAGCTATC
s cb4.chrX              9987480 35 + 21540570 --CTATTTATTATATTCTT---------TTGCTCTCA---TATTCTAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1577537 16 -  4500979 --CTA----------------------------CTCA---TCTTCTAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0      2908503 16 +  4147112 ---------------------------------cttagaTGATGCTAAC
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   36391 46 +   591668 TTCTAACGGCTCCTTGCCCGCCAGACCGCTCCTCCCC---CGCTCCGCC
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622   309058 20 +   386604 I

a score=20519.000000
s ce10.chrX             4655062 70 + 17718866 GGGT-----TCTTCAGAC---------CCTTTGG---ATTATTCATAATAGCAAATCAG--AGCAACTGAGCTAATGAGATGAACTATT
s cb4.chrX              9987515 71 + 21540570 TGGA-----GACCGCGCT---GGGC--GGTCCGGGTTTTCTTTCATAATCGGG----GG--CGCAGC--AGCTAATGAGATGACCCATT
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0  1577553 72 -  4500979 GGGC-----TCTTCAGCT---TCTT--GCGCCGG---TTTATTCATTATGGAATGCTGG--CGCACC--AGATAATGAGATGACCCATT
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold622   309078 75 +   386604 GGGG-----TCTTCAGCTCCCCGGC--GGTCTGG---TTTATTCATAATGGAAAATTTG--CGCAGC--AGCTAATGAGATGACCCATT
i caeSp111.Scaffold622  I 20 I 10
s caePb3.Scfld02_0      2908519 79 +  4147112 GGAGCCCCCTCTTCAGCT---GGGC--GGTCTGG---TTTATTCATAATGGAAAATGGGCCCGCAGC--AGCTAATGAGATGACCAATT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   36437 65 +   591668 --------------AGCT---CAGTTAGCtccgt---tttatttatttatttatacaTA--CAAGCC--AGCTAATTGGATGACCGATT
i caeJap4.Scaffold17934 C 0 I 22

a score=-6276.000000
s ce10.chrX             4655132 45 + 17718866 CTTTTTGTCTCTTCTGTGTCAT-------TTTATT--------------------GTATTGGTTTCGGCTTC
s caeRem4.Crem_Contig0  1577635 45 -  4500979 CTCACAGTGTCTTAT-TGTTATTGGTCTAGTCACC--------------------GCATCAGTTAC------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold622   309163 45 +   386604 CTCATATTTTCTTAT-TGTTGTCGGCGTATTCATT--------------------GTATGAATGAC------
i caeSp111.Scaffold622  I 10 C 0
s caePb3.Scfld02_0      2908608 33 +  4147112 CTCatattttct---------------tattcattG------------------CGCATCAGTTAC------
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   36524 55 +   591668 ----ctttttttcat-tgtcgACCGCGTCGTCATCAATTTCTTCTCCTTTATTCCGCACC------------
i caeJap4.Scaffold17934 I 22 C 0
e cb4.chrX              9987586 42 + 21540570 I

a score=26159.000000
s ce10.chrX             4655177 43 + 17718866 TATTGTACTCCA-----------AGCACAC-AGAAGTTTACCG-CCTACCGGAGCT
s cb4.chrX              9987628 45 + 21540570 CATTGTTCGAAA-----------AGCGCATAAAAAATATGCCGCCCTACCGGAGCT
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0  1577680 41 -  4500979 CATTGTTTCAAA-----------AGTAC---AGAAGTATGCCG-CCTACCGGAGct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   309208 52 +   386604 AATTGAATAAAACTGTGAAGCTGAGTAC---AGAAGTATGCCG-CCTACCGGAGCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908641 41 +  4147112 TATTGTCTAACA-----------AATAC---AAAAGTACGCCG-CCTACCGGAGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   36579 38 +   591668 TATTGTTTTTTG--------------AC---AGAAGTATGCCG-CCTACCGGAGCT
i caeJap4.Scaffold17934 C 0 I 851

a score=6215.000000
s ce10.chrX             4655220 204 + 17718866 TCTTCTATTTGATTGTGACATGATGAGAAA--------TAAAG-------ACAGAAA---CATAAATTTTTTAGAACTAAAAAAGAGAAAATGGGAATAAATAAAGTT-----------------------------GCGGAGGAG-TTGAAGACGGAAGAACA--AGAACTA---TTGACAAGAGGAGACAATTTTTAATAGTTGAGGAATGATGGAGCACTTTT----------TATATTGTTAACGG-----GAGG---AAACGAAATGAAA
s cb4.chrX              9987673 171 + 21540570 TCTT-------TTTGTCACC-----GCAAA--------TAGAG-------GCATGAA--------------------ATTATAA----ACAGTTAGATAAATATGAGA---------------------------------ATGGA-------GTGGGAGAACATGTTGAAAA---TCG--AATCGGAGACAATTTTTAATAGTTGAGGAATGATGAAGCTTTtattattatcatttttattgttatcagaagaaaat----gaaaaaaat----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1577721 214 -  4500979 tctttt---tatttgttaCC-----AGTGA--------TGGAGAATACTaacatgaaaaaaa----------ggaacaatATAAAATGATAGTCAAATAAATGCAACAGGGCTTTTTGCATATTACGATTTAGTG--GCTGAGGGA-------GGGGgaggaaa--ataagaa---ttc--tACAGTAGAC-ATTTTTAATA---GAGGAATGATGAAgcttttattattat--tttttattgcaaaCGG-----TAT----GAACAATAT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   309260 213 +   386604 TCTCCTTAGTAAtgattatc-----aaaaa--------tagga-------acaaaaa---gg----------gaaacaatac-aaaaaataaacgaatAA---TGCGGGGGGTCTACGCATTTTACAAT--------GCGGAGGAG-TTGTATGTGGGAGGGAA--AGAGAACGGTTTG--CATGGGAAGAAGTTTTTAATAGTTGAGGAATGATGAAGCTTTTATGATTGT----CTTATTGTT---TG-----TAGAGGCAAACAATATGAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2908682 232 +  4147112 TCTAACAAATCGTCatgatc-----aaaaacttttgatcaaaa-------acagaaa---cg--------TTGGAACAATGCGGGAAAATAGACGAATAAAT-AAAGAGGGGCCCCCGCATTTTACATTTTACGACAGCGGAGGAGTTTGAATGTGGGAGGG-A--ATAAAACGG-TCG--TACAGAAGACGATTTTTAATAGTTGAGGAATGATGAAGCATATATTATTGT----TTTATTATTAACTG-----TAA----AAACAATATGAAA
i caePb3.Scfld02_0      C 0 I 1712
e caeJap4.Scaffold17934   36617 851 +   591668 I

a score=613.000000
s ce10.chrX             4655424 2 + 17718866 AA
s cb4.chrX              9987844 2 + 21540570 ga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1577935 2 -  4500979 Ga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   309473 2 +   386604 AA
i caeSp111.Scaffold622  C 0 I 532
e caePb3.Scfld02_0      2908914 1712 +  4147112 I
e caeJap4.Scaffold17934   36617 851 +   591668 I

a score=-1002.000000
s ce10.chrX             4655426 1 + 17718866 G----
s cb4.chrX              9987846 1 + 21540570 g----
i cb4.chrX              C 0 I 1720
s caeRem4.Crem_Contig0  1577937 5 -  4500979 aaacg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2908914 1712 +  4147112 I
e caeJap4.Scaffold17934   36617 851 +   591668 I
e caeSp111.Scaffold622   309475 532 +   386604 I

a score=-4313.000000
s ce10.chrX             4655427 928 + 17718866  
s caeRem4.Crem_Contig0  1577942 721 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2908914 1712 +  4147112 I
e caeJap4.Scaffold17934   36617 851 +   591668 I
e cb4.chrX              9987847 1720 + 21540570 I
e caeSp111.Scaffold622   309475 532 +   386604 I

a score=600.000000
s ce10.chrX             4656355 2 + 17718866 GC
s caeRem4.Crem_Contig0  1578663 2 -  4500979 GC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   310007 2 +   386604 GC
i caeSp111.Scaffold622  I 532 C 0
e caePb3.Scfld02_0      2908914 1712 +  4147112 I
e caeJap4.Scaffold17934   36617 851 +   591668 I
e cb4.chrX              9987847 1720 + 21540570 I

a score=3873.000000
s ce10.chrX             4656357 17 + 17718866 TGTTATTCACTGGAAAC
s caeRem4.Crem_Contig0  1578665 17 -  4500979 TGTTTTCCACAGGTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   310009 17 +   386604 TGTTGTTGACGAACAAC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2910626 17 +  4147112 TGTTATTCACTGAGAGC
i caePb3.Scfld02_0      I 1712 C 0
e caeJap4.Scaffold17934   36617 851 +   591668 I
e cb4.chrX              9987847 1720 + 21540570 I

a score=8529.000000
s ce10.chrX             4656374 446 + 17718866  
s cb4.chrX              9989567 446 + 21540570  
i cb4.chrX              I 1720 C 0
s caeRem4.Crem_Contig0  1578682 435 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   310026 436 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2910643 448 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   36617 851 +   591668 I

a score=401787.000000
s ce10.chrX             4656820 541 + 17718866  
s cb4.chrX              9990013 547 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1579117 526 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold622   310462 524 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2911091 503 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   37468 532 +   591668  
i caeJap4.Scaffold17934 I 851 C 0

a score=-8305.000000
s ce10.chrX             4657361 37 + 17718866 ------------AAGTAAGTACATATTAAATATTTCTCATCAAACTTAA----
s cb4.chrX              9990560 24 + 21540570 -------------------------tagtaAGTTCGGCCTGAACAATCA----
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold622   310986 32 +   386604 -----------------ATGCTTATTTGAGGATTTGTTCTGAACGCTGA----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2911594 32 +  4147112 -----------------ATTGCGATTAAAATATTAATCCCCAGACATGA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   38000 49 +   591668 tgaaaaatgaacaattaagattgatttgaattttaa----aaaaattcaaaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0  1579643 18 -  4500979 I

a score=354659.000000
s ce10.chrX             4657398 550 + 17718866  
s cb4.chrX              9990591 509 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0  1579661 625 -  4500979  
i caeRem4.Crem_Contig0  I 18 I 4
s caeSp111.Scaffold622   311018 629 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2911626 638 +  4147112  
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17934   38049 489 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-1315.000000
s ce10.chrX             4657948 8 + 17718866 GAATAGAT---
s cb4.chrX              9991100 2 + 21540570 ------at---
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0  1580290 3 -  4500979 -----gat---
i caeRem4.Crem_Contig0  I 4 I 4
s caeSp111.Scaffold622   311647 8 +   386604 GAAACGAT---
i caeSp111.Scaffold622  C 0 I 26
s caeJap4.Scaffold17934   38538 6 +   591668 -----GATAAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I

a score=1272.000000
s ce10.chrX             4657956 5 + 17718866 TCAGA
s cb4.chrX              9991112 5 + 21540570 tttga
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0  1580297 5 -  4500979 ttaga
i caeRem4.Crem_Contig0  I 4 I 1
s caeJap4.Scaffold17934   38544 5 +   591668 TGAGA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e caeSp111.Scaffold622   311655 26 +   386604 I

a score=557.000000
s ce10.chrX             4657961 11 + 17718866 AATATGTGAAA
s cb4.chrX              9991117 11 + 21540570 aaaatccgaaa
i cb4.chrX              C 0 I 4
s caeJap4.Scaffold17934   38549  6 +   591668 -----ATAAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e caeSp111.Scaffold622   311655 26 +   386604 I
e caeRem4.Crem_Contig0  1580302  1 -  4500979 I

a score=357.000000
s ce10.chrX             4657972 23 + 17718866 TGTTTTTGGTTAAAAGTAAAGTA
s caeJap4.Scaffold17934   38555 23 +   591668 GGTTTGAAGCTATATATAATATA
i caeJap4.Scaffold17934 C 0 I 11
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e cb4.chrX              9991128  4 + 21540570 I
e caeSp111.Scaffold622   311655 26 +   386604 I
e caeRem4.Crem_Contig0  1580302  1 -  4500979 I

a score=0.000000
s ce10.chrX             4657995 463 + 17718866 TGAAAAAAATAATTGAAAAACGTTTATCAAAAATTTTAGAAACATTTTTATTCTGATTCGGAAAGTCGTGAAAACTGAGTTTGCGCCActcttcaagaaatctaaatcactgtaacatgtttgaattcctacaatgttgaaatatgaatatttggaacatatttaaaacatatcactgaaagaaaactttttttcgatcgacgacttccaaaataaatggtgggatttgatgcttcacctatttttgacttcaaataaaataatttatcaacgttttttgaaaagtttcatatttgtcgatatttggtcatcatagcatcatagaaattatttttaataactttctcattTGTTGGACATCATCTATAATGAACCACGGCTGATTCCACATAAATTACATTTTTCAGTTGCTCATCAAAAAAATTAATCAGAATCAGAATGTACGTATGTAGTACAACTTAAC
e caePb3.Scfld02_0      2912264  38 +  4147112 I
e caeJap4.Scaffold17934   38578  11 +   591668 I
e cb4.chrX              9991128   4 + 21540570 I
e caeSp111.Scaffold622   311655  26 +   386604 I
e caeRem4.Crem_Contig0  1580302   1 -  4500979 I

a score=265.000000
s ce10.chrX             4658458 10 + 17718866 AAACCACATT
s caeRem4.Crem_Contig0  1580303 10 -  4500979 aaactaaGTG
i caeRem4.Crem_Contig0  I 1 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e caeJap4.Scaffold17934   38578 11 +   591668 I
e cb4.chrX              9991128  4 + 21540570 I
e caeSp111.Scaffold622   311655 26 +   386604 I

a score=314.000000
s ce10.chrX             4658468 4 + 17718866 AACT
s cb4.chrX              9991132 4 + 21540570 aaGC
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0  1580313 4 -  4500979 AAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e caeJap4.Scaffold17934   38578 11 +   591668 I
e caeSp111.Scaffold622   311655 26 +   386604 I

a score=-373.000000
s ce10.chrX             4658472 2 + 17718866 CT
s cb4.chrX              9991136 2 + 21540570 CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1580317 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   38589 2 +   591668 CT
i caeJap4.Scaffold17934 I 11 C 0
e caePb3.Scfld02_0      2912264 38 +  4147112 I
e caeSp111.Scaffold622   311655 26 +   386604 I

a score=155126.000000
s ce10.chrX             4658474 318 + 17718866 TACCTGTCCAAACATTGCATCAATAGTCGGCGTTAAAACATTTTGCACATTCACATGAAGATCCTGGGTTGCTTGTTGTGCGGCCATGGCAAACATTTGATTCTGATTTCCA------G---ATTCATTATTGTATTC---TTGAGG---TACTTGGTTATATTGT---GTAAACGAAGAGGGGATGGCCGATGAATTCTGCTCGTCTGTGCTCAACAAATCTGTGTATTGATAGTCGAAAGGT---------TGCGGAATAT----------------GAATTGGTGGTTGTTGGAAT---------------------------------------GGAGGAGTTGGCATTACCGCTCGACCCACCTGAAAGT------------ATAGAAATTATGCTCTATGCAATTT
s cb4.chrX              9991138 332 + 21540570 TACCTGTCCAAACAAGTTATCAATGGATGGCGTCaacacattttgaacattCACATGAAGATCCTGGGTGGCTTGTTGGGCTGCCATCGCGAACAT---Gtttggatttcca------gaatcttgaTTATTGTACCCCGGTTGTGGCACCACGTTATTGTAGTGTTGTGTGGATGATGATGGCA---------TGTTGTGTTCGTCAGTGCTCAACAGATCTGTGTAATGGTAGTCGAATTGA---------GAAGGAATA----TGCGGTTGCATTTGCATATGCT---GTTGTTGC---------------------------------------TGAGGAGCTGGCATGACTGCTCTTCcaacctgaaaatttatta------gattaaatgaagcaaaaagaaa-ac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1580319 321 -  4500979 TACCTGGCCGAACATGTTGTCGATGGTTGGcgtcaaaacattttgaacattAACATGAAGATCTTGTGTAGCTTGTTGTGCTGCCATGGCAAACATCTGATTCTGATTTCCG------G---CTTCATTATTGTATTC---TTGAGG---CATGTTATTGTAGTGT------GATGACGATGGCATCGATGTGGTATTTTGTTCGTCGCTACTCAATAGATCAGAGTACTGGTAATCAAATTGCTG------TTGGGGGATGT-GTTGCTGGTGCTGTTGCATG---------TGTTGC---------------------------------------TGAGGAGCTGGCATAACTGCTCTACCCacctgaaaac------------aagaaaataaaattagaaaaaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   311681 363 +   386604 taccTGTCCAAACATAGCGTCGATAGTCGGCGTGagaacattttgaacatttaCATGAAGATCTTGAGTTGCTTGTTGGGCAGCCATAGCGAACATCTGATTTTGATTTCCA------G---TGTCATGATTGTATTC---CTGTGG---CATGTTATTGTAGTGA------GAGGATGAAGGCATTGAAGTCACATTGTGTTCCTCTGTGCTCAACAAATCAGTGTATTGATAATCGAATTGTGG----AGGTGGAAGGTTTAGAGgttgatgttgttgaatatgttgtggttgttgctgttggagttgttggtgttgttgtgtttgttgttgtAGTGGAGGCGTTGGCATAACAGCTCGCCCAACCTGTA------------------ATAATTAAAGTAAGAA------
i caeSp111.Scaffold622  I 26 C 0
s caePb3.Scfld02_0      2912302 331 +  4147112 TACCTGACCAAACAGTGAATCAATTGTTGGTGTTAGAACATTCTGTACATTGACGTGGAGATCTTGGGTAGCTTGTTGAGCAGCCATAGCGAACATTTGGTTCTGATTTCCA------G---ATTCGTGATTGTATTC---ATGGGA---CATGCCATTGTAATGG------GATGAAGATGGCATTGATGTTCCGTTGTGCTCATCAGTGCTCATCAAATCAGTGTATTGGTAATCAAactgttgttgctgttggGAAATAT-GAGGCTGATGTTGTGGAatgtgttgttgttgctgc---------------------------------------GGAGGAGTTGGCATCACCGCCCGTCCTACCTGAAAAT------------GATACAATTAAATTAAG--------
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17934   38591 335 +   591668 TACCTGACTAAAAATAGCGTCAATCGACGGCGTGAGAACGTTTTGCACATTTACATGAAGGTCTTGAGTTGCTTGTTGAGCAGCCATGGCGAACATTTGATTTTGATTATTACCACTCG---GATCAGTGTTATACTC---CTGTGG---AACATTTGTATAATGT---GTTGATGACGATGGTAAAGCCAAAGTATTTTGCTCATCTGTACTCAGCAAATCTGTGAATTGGTAGTCAAATGAA---------GGGAGTACAT-TCGTTTGTGGCTGTTGA------TGTGGATGTTGC---------------------------------------GGTGCGTTTGGCATGACTGCTCGGCCGACCTGGAAATAAAGAAGAGCATGTTTTAGTGAAATTT----------
i caeJap4.Scaffold17934 C 0 I 1253

a score=127.000000
s ce10.chrX             4658792 227 + 17718866 TCatg-----------tacatatgtatgtatagtatatgtatttaattgtatagtatatgtatTTAATCGAAGTGTGCCTGGGTTTCGATAATTCCTGAACAAATGAGTGTGAT-TTGAGTGATAAGAAAATTCAACTCGTAAAGTGTAT----TTTTCCGGTC---------------------------AGTTTGAACTTACAGCAGAAGTCACA-TTTGGAGCACCG----AGCATTGCGTA---GCGACTTCCAGTTTTATCCACCACAAAGAA---
s cb4.chrX              9991470 200 + 21540570 gCATAACACAatcgattattttttcttgaattttctatACATTTCTTTGACCGA--------------AAAAGTGTGTCT-----------ATACTAAAAGCACGGTATGTGCCACGGAATGATAAGAAAATTGAACTC---------------TACTCTGGTC---------------------------------AACTTACGGCAGAAGTCAGA------CTTTTTGGTATAAGATACCGCAAGTGGAGGTTCT--TCTTGTTACTAACAAGAAACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1580640 190 -  4500979 ----------------tatttg------------------atttcaatgaaatc--------------tAAAGTGTGtcttg-------aagttttcaaagtaTGGTATGTGAC-CAATTTGATAAGAGAGTTGAACTCATAAACCTTCTCCCTTTCCCCCCTC---------------------------------AACTCACAACAGAAGTCAGAGGCTGGCGCTCTGTAATAGCAAAGTATATTCGCAAGTTTC--GTTTGTTGTATACCAGAAACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312044 195 +   386604 ----------------TGCTTC------------CTctgattttcattgaaatg-----------aa-aaaagtgtgtCCGA-------TGGTTTTCAAAG-------TGTGCC-CAAATTGataaggaaaatgaaatcgtAAACT--------TTCTACCCTT---------------CTGAcacaatcaaaaagaaactcacATCAGAAGTCACG-GCAGAAGAGCCG--AAAACATGATAAAGAtccaagtttt--ttgaatttcttacAAGAAA---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2912633 209 +  4147112 -------------------------------------TAAATTTCCAGGAAATA-----------AGTGAAAGTGTGTCCAG-------TAGTTTTCAAAGTATGGTCTGTGAC-TAGAAAGATAAGAAATATGAACTTGTAAACT--------CTCTCCCTCCGTGTCTCGCTTTACGCTGAAACTCTAAAACTGAAACTCACGGCAGAAGTCACA-CCAAAGTCAGTG--AAAACAGTATAGGTGTCCAAGTTCT--TGTAGTTTATCAAGAGGAA---
i caePb3.Scfld02_0      C 0 I 87
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=-9450.000000
s ce10.chrX             4659019 82 + 17718866 CGCCGGCATTATTGCACTGATTCAAAAAATAATTCAAAAAGT-----AGCG---CAAAAAGCC-----AAAGTAACAATGGGATGT-----ATTTTTCTC
s cb4.chrX              9991670 86 + 21540570 CATGGGCATT-GTGTAAAAACGCCacaaaaaattgtagaatG-----AGAA---ATAAAAGGA-----AACGGAGCAGATGAATTTGGTCTACGTCTCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1580830 64 -  4500979 TGCG----------------------------TTGTAgaatgaattcagaattcgtAAAGATT-----AGGACAGCAGATGCTTCTGG---GCGTTTCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312239 61 +   386604 ------AATC-CAGT-----------------TTATATTAGA-----AGGA---ATAAGCATTTCGGCAAGAGAGCAGATActtct-----gtttttc--
i caeSp111.Scaffold622  C 0 I 9
e caePb3.Scfld02_0      2912842 87 +  4147112 I
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=1723.000000
s ce10.chrX             4659101 10 + 17718866 ----AGCTTGCTAT
s cb4.chrX              9991756 10 + 21540570 ----TGGTTGCTAT
i cb4.chrX              C 0 I 125
s caeSp111.Scaffold622   312309 14 +   386604 ATCTTGTTTAGTAT
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0      2912929 14 +  4147112 AGCTTGTTTAGAAT
i caePb3.Scfld02_0      I 87 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I
e caeRem4.Crem_Contig0  1580894  0 -  4500979 C

a score=10478.000000
s ce10.chrX             4659111 66 + 17718866 -------TTCGCTCAAACTTGCGCTGCCCTGTTGTCATGGGGATAATGGCTTTTCTCGAAGCATATAATTTTA
s caeRem4.Crem_Contig0  1580894 71 -  4500979 TGAGTTACCCGAGC-ACTGCGCGTCTAGAAGTTGCTATGGTAATCAGAG-TTCAATCGAAGCGTAAAATTATG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622   312323 63 +   386604 --------TCAAGC-AACTCGCATCTACTCGTTGCTATGGAAATTAGGG-TTCGGCCGAAACGTTGAATTATG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2912943 64 +  4147112 -------ATCAGGC-AACTCGTATCCACTCGTTGCTATGGGAATAAAGG-TGTAGCCGAAGCGTAGAATTATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I
e cb4.chrX              9991766 125 + 21540570 I

a score=-14258.000000
s ce10.chrX             4659177  92 + 17718866 -----ACGATGTGTTGCCCGAGTCCACAAGATTGACTTTCATC-----------------------TAATGAAATTTTTGTGCTGGATAGAATTAGAATTTTGG-----TCAGAAAGAAAATTTG---------------------
s cb4.chrX              9991891 105 + 21540570 ACTATGTG---------CTCTATCTATAACATCAGATTTCGTAAACTAATTCCGCCCCAACGACATCGCTCATGATCT-----------ATGGAAGATTTTGAAGACAATCCGAAAGAGGATTAG---------------------
i cb4.chrX              I 125 I 51
s caeRem4.Crem_Contig0  1580967  83 -  4500979 GCTA-GTGAGGCGCCTCCTGTTTCCGTAAGATTGAACTTTATG-----------------------CGAGCAAGAGCC-----------gaataagaaatgaaa-------tggCAGATGAATAA---------------------
i caeRem4.Crem_Contig0  I 2 I 4
s caeSp111.Scaffold622   312386  90 +   386604 -----ACGTCCAGCCGCCTGTTTCCGCCAGAGTGGACTTTGCG-----------------------C--------------------------GAGATGTATGA-ATGCACTGGTAGATGAATATAA-ATGAGAGAGCGCGAAAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913007  96 +  4147112 -----ATGTTATGCCGCCTGTTTCCGCGAGTATGGACTTTATG-----------------------TGGTTGGAAA-------------GAGGGAGAGGTTTGA-ATGCACTGGCAGCTGAATAAAATATGAAGGAG--------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=3074.000000
s ce10.chrX             4659269 14 + 17718866 -----------TCAAGTGCTTCAGT
s caeRem4.Crem_Contig0  1581054 25 -  4500979 TGGGGGCTGAGACTGGTGCTTCTAT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622   312476 14 +   386604 -----------ACTAGTGCTTCCGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913103 14 +  4147112 -----------TGTGGTGCTTCCGT
i caePb3.Scfld02_0      C 0 I 162
e caeJap4.Scaffold17934   38926 1253 +   591668 I
e cb4.chrX              9991996 51 + 21540570 I

a score=-514.000000
s ce10.chrX             4659283 45 + 17718866 AGTAGTCCATTGAATAATGCATATGTACATGA-ATCG--CAAG----------------CATAA-------------
s caeRem4.Crem_Contig0  1581079 68 -  4500979 ----GTGCATTACATAAGAT-----TTTATAAAACCGCCCAAGATATAGAGATGATCTATGTAAGATGGCGCAGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312490 60 +   386604 ----GTGTATAACATCAGATATACGTATCTAACACCGCCcaagaatttcagatgatctATGTAA-------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2913117 162 +  4147112 I
e caeJap4.Scaffold17934   38926 1253 +   591668 I
e cb4.chrX              9991996 51 + 21540570 I

a score=-9793.000000
s ce10.chrX             4659328 74 + 17718866 GA-----------AGCCGGCGCGGATTAAATTCCACTACTGGGACAATTTGGTCGATGGA-TT-------------ATGACTCATCTTCAATCAATATG-
s cb4.chrX              9992047 60 + 21540570 ------------------GAAGGAACTGCTGACTCATTTCA----ACTTTGATCGCTGC--TCA--CAGAACTA--TTGACCTAGCTC------------
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig0  1581147 73 -  4500979 -------------ATCCGCAACAGATTAGTGCTCCCTTT-------TTCGAAACGATGCA-TCAATTGGATTAA--ATGACTCATCTCAACTT----TGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312550 88 +   386604 GTCTTTGCAGACAATCCATAACAGATTAGCCCCATCTTT-------TTCTGTACCATGGATTTATTTGGGGGGATTATGACTCATTTCAACTT----TG-
i caeSp111.Scaffold622  C 0 I 1
e caePb3.Scfld02_0      2913117 162 +  4147112 I
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=3860.000000
s ce10.chrX             4659402 30 + 17718866 TGTTTACTTT----TATAATGTTTACCGACATCA
s cb4.chrX              9992107 22 + 21540570 TTTATGATTT----CA-AACGCAAACA-------
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0  1581220 29 -  4500979 TCAATGCTTT----GA-ACTATTGACAGACATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312639 29 +   386604 TTCTTGCTTC----GA-ACTCTTGACCGACATCA
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2913279 33 +  4147112 TCAATGCTTCAAATGA-ACTGTTGACCGACATCA
i caePb3.Scfld02_0      I 162 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=-2332.000000
s ce10.chrX             4659432 25 + 17718866 TTTTGTGGTCGGTAAAGTAAACCTT------------
s caeRem4.Crem_Contig0  1581249 35 -  4500979 --TTATGATCTCGAGCGCAAATATCAAACCAGAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312668 22 +   386604 -TTTT---ATTGCTGCGCAAACATTT-----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913312 25 +  4147112 -CTTTTGATTCGCTGCGCAAACACTT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I
e cb4.chrX              9992129 20 + 21540570 I

a score=-5574.000000
s ce10.chrX             4659457 11 + 17718866 CAAAGA-------------------------------------AAACT
s cb4.chrX              9992149 14 + 21540570 CAAAGAAAA----------------------------------GAACA
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0  1581284  9 -  4500979 -----AAAG----------------------------------AAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312690 28 +   386604 CCGAGAAAAAGTTGACTC-------TTTTC-------------AAATC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913337 48 +  4147112 Ctcagaaatggttttttctgtattgttttccgaaaagaaaccaaaatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   38926 1253 +   591668 I

a score=258613.000000
s ce10.chrX             4659468 374 + 17718866 ACA-------AACCTCTTCAATGACAGTTCTGTGAAACGAAAAGTTTA---GCTGATGCATATCGCTATTCGGTTGATAGGCGTCCGACGCAACCTCCTGCACAAACGTTCCATTATTGCCCATTAATAACGGAGGATCTGGATTCTGG-----TTCTGCTGCTGCTGCTCGAAACTCGGCGGTCGACACGTGTAAGATTCCAGGGAAGAATGCGG---AGAATGTCCAATGCTGTCAGTCTCATTTCCAGACGAGTCCTTCTCGGTCTCCGATTTGTTTTGTACCACTGAAACAGGGGATG---TGAGATCTGCAAT-TGGAGGGGAATTGT---GTGTGGGGAAAGGATGCATGCT---------ATTTTGATCTGGAGATG-AAG---TACTCGAGT------------CT--------TTTTCGATTG
s cb4.chrX              9992163 404 + 21540570 ACAAATGTCTAACCTCTTCAATGACTGTTCTGTGAAATGGGAAGTTTGGCTGCTGATGCAAATCGCCATTTGGTTGATAGGCTTCTGATGACACTTCTTGCACAAAATTCCCGTT---CATTAGTAAGGGCGGAGGGTCGGGATTCTGT-----AT------CTGTTTGTCAAAACTGGGCGGTCGATATGTATATGATTCTAAGGAGGAGTGTGG---CGAGTGTCCTATGCTATCGGTCTCATTGCCCGACGAGTCCTTTTCCGCTTCGGATTTATTTTGAACCACTGAAACAGGGGATG---TGAGATCTGCAAT-AGGGTGGGCATTGGCAAGAGGGGAGACGGGGAGCATGCTTGTGTTGATAATTTGGTCAGCAGCTGGCAG---TACTTGAGTACCTACTT----GTGCAGCTATTTTTAGGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1581293 391 -  4500979 ACA-------AACCTCTTCAATAACAGTTCTGTGAAATGAAAAGTTGG---GTTGATGCAAATCTCCATTTGGTTGGTAGGCTTCCGAAGAAACTTCTTGTACAAAGGTGCCGTTGCCCATAAGTAGCGGCGGAGGGTCcggattttga-----at------ctgtttgTCAAAACTCGGCGGCCGATATGTAAATGACTCGAGGGAGGAGTGCGGAGAAGAGTGTTCAATGCTATCAGTCTCATTGCCAGATGAATCCTTTTCCGCTTCTGATTTATTTTGCACCACTGAAACAGGGGATG---TGAGATCTGCAAT-TGTGTGGGAATTGG--ATTTGGGGGATAGGAAGCATGCT----GTGGTGGTTTGGTGAACCCGAGTTAT---TACTCGAGTACCTACTC----AT---GCTATTTTTAGGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   312718 387 +   386604 ACA-------AACCTCTTCAATAACTGTTCTGTGGAATGAGAAGTTTG---GTTGATGCAAATCCCCATTTGGTTGATAGGCTTCCGATCCAACTTCTTGAACAAATGTTCCATT---TCCTAACATGTGTGGAGGTTCAGGATTCTGA-----AT------TTGCTTCTCGAAACTGGGCGGCCGATATGTGTATGATTCGAGAGAAGAATGTGG---TGAATGTCCTATACTATCTGTATCATTTCCAGATGAATCCTTCTCAGCTTCGGATTTGTTTTGTACCACTGAAACATGGGATG---TGAGATCTGTAAT-TGAGCGGGAATTGG--AAT-GGGGGAAAGGAAGCATGCT----TTGGTAGTTTGGTCATTGTGTA-CAG---TACTCAAGTACTTGCCTACTCAT---GCTATTTTTAGGTTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913385 385 +  4147112 ACA-------AACCTCTTCAATAACCGTTctatggaatgaaaaattgg---gttgATGCAAATCTCCGTTAGGTTGATACGCTTCTGATCCTACTTCTTGCACATACGTTCCATT---TCCTATTAGAGCTGGTGGTTCTGGATTTTGT-----AT------CTGCTTGTCAAAACTTGGCGGTCGATATGTATATGATTCCAGGGAGGAGTGAGG---TGAATGTCCTATGCTATCTGTTTCATTTCCTGACGAATCCTTCTCCGCTTCGGATTTATTTTGTACCACTGAAACAGGGGATG---TGAGATCTGCAATATGGGTGGGAATTGG--AGT--GGGGAAAGGAAGCATGCT----TTGAAAGTTTGGTCAGCAGGTG-CAGCACTACTTGAGCACTTTCAC-----T---GCTATTTTTAGGTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   40179 365 +   591668 ACA-------AACCTCTTCAATAACAGTTCTATGAAATGAAAAGTTGG---GCTGATGCAAATCGCTGTTCGGTTGATAGGCCTCTGATGCAACCTCATTAACAAAATTTCCACC--------ATGATGTCCACTTGGCAACATTCCGTTGCTCTT------TTTATTCTCATAACCCGGTAGTGGATAATTGTAGGACTCTAGTGACGAATGAGG---AGAGTGCCCAATGCTATCGGTTTCACATCCCGACGAGTCTTTCTCTGCTTCTGACTTGTTTTGAACCACTGAAACAGGAGATGTGATGAGATCTGAAAT-AGTGTGGGACATGA--AAC-AAGGGAT---AAGCATGCT---------AATCTGGTGAGCAGGTA-CAA---TATTTGAGC------------TC--------TTTTCAGTCA
i caeJap4.Scaffold17934 I 1253 I 101

a score=203546.000000
s ce10.chrX             4659842 522 + 17718866  
s cb4.chrX              9992567 505 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1581684 554 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   313105 466 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2913770 511 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   40645 738 +   591668  
i caeJap4.Scaffold17934 I 101 I 22

a score=948.000000
s ce10.chrX             4660364 13 + 17718866 AATAAAAATGAAA
s cb4.chrX              9993072 11 + 21540570 AAACACAA--CAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1582238 13 -  4500979 GAACATAGatcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   313571 13 +   386604 AATCGAAATCTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2914281 13 +  4147112 AAACACAATTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   41383 22 +   591668 I

a score=-13028.000000
s ce10.chrX             4660377 33 + 17718866 GCTTCA--AAAGA-TTTCTCAATAGT------GCAAGTT-----TAC-
s cb4.chrX              9993083 34 + 21540570 AGTATA--AAAGACTGTGTAAAAGAT------ACAGATG-----TAT-
i cb4.chrX              C 0 I 134
s caeRem4.Crem_Contig0  1582251 44 -  4500979 gatttt--gaaaa-tctggaagcGATTTGTTCCTGGATGCTAGTTAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   313584 33 +   386604 TTACAT--AAAGT-AATGGGAAAGAC------CAAAAAG-----TAC-
i caeSp111.Scaffold622  C 0 I 30
s caePb3.Scfld02_0      2914294 33 +  4147112 TTTGTTtgataga-aatgagaa--at------caaaaag-----tac-
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17934   41405 34 +   591668 GTTTTG--AGAGA-GCTTTGACTCAT------TCAGCAG-----TTTA
i caeJap4.Scaffold17934 I 22 C 0

a score=-25368.000000
s ce10.chrX             4660410 134 + 17718866 TACAGCCAGGTGA-------AGTGATGTGGCAAGAAA----------------GAAGA--------AAAGTTATTACATTTTCAGATCAA------TGGAAATA------AACATAAGAATGT------------------GGGGTACATTTT----CACGCAGATATAATAATTTTTCATTAAAAT--------ATTGAAAGAGCA
s caeRem4.Crem_Contig0  1582295 146 -  4500979 ---------------------------------CAAA--TCAAGCTAACTCATGATGC-ATCTATAAAATATATAAGCAATACAAAACA-------GAGCAATA------ACTATAAAAATCGTCCTCAAAACATTCTGAACGATTGTATTTA------------AGTCACAAAATTCTAGTAGTATGACTTGTGAGTCAAAAATCA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622   313647 183 +   386604 AATTGCGAAGAAC-------AGGGAAATGCTAGAAAA---------ATCATGTGATGCTACTCGCGAAGCTAATTCTAAtcagaaaacga------gaaaaacaagattcaATCTGACAATTATACTC-AcacttctcgaaaaattgtaCTTTATTCCACATAA-AGTCACAATATTCTGGTAGTATGACTTGTGAGTCAAAAAGCA
i caeSp111.Scaffold622  I 30 I 6
s caePb3.Scfld02_0      2914352 176 +  4147112 AATATGGcggaaatattctgaaatatatCCTAGGAAATAACAATTCAAAGTATGAAGC--------ATGCTTATTTAGATCAGAAAGCTAcatcctgaaaaaca------aattggaaaatga---------------aaaaaattgtatttga--aCATATAAGAGTCATAATATTCTACTAGTATGACTTGTGAGTCAAGAATCA
i caePb3.Scfld02_0      I 25 I 6
s caeJap4.Scaffold17934   41439 108 +   591668 ---------------------AAGACGTA----AAAA----------------GATTT-AactatacatttttttttaatcagaaaCTG-------TGTCGGAA------GCTGTGAATAGGG------------TCAAAAGAACGATG----------------AGGAGCA----------Gatatga------aaaaaagaagca
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9993117 134 + 21540570 I

a score=71592.000000
s ce10.chrX             4660544 270 + 17718866 -----GAGAGAAA--AAGAAATGCTTGAAACGTCAACCACAAAAGCTCACAATG----TT-CCAACAATG---GAGGTGACGGCCATT-TTTATGCGTAT--AACTTTTCTTATCAATTTGATTCA-AAAATTACTAATCATACGATAAAATCAATTTGGCCAGGAAAAGAAA---GTATTTTCC--ACAAT-----TTTTTGACATCATATTTTT----------------------ACAAGTGTGTCA---TTTTGC---------------------------------------------------AAGTCACATGTTGAAGATTGTTG--AAA-AAAAGGTTGTAAGGTTCTCC-----AAATTGAATT-ATTTTTCCC-
s cb4.chrX              9993251 320 + 21540570 -----gagagaaa--aagaaacg------acGTCAA-CGGAAAAGCTCATAATG----TT-CCAGTAATGGTCGTCGCGCCGACCATCTTTTATGCGTGTAGAACTTTCCTTAtcg--ctgatttcaaaaattactaaTCATACGATATAATCAA-TAgacgaagagaaaaaatgcgcatttttcagccaat-----aaATTGacatcatttatttttttta-----aagttatcaAGTCAAGTGTGACACAGTTCGTC----TTCACAGTTCATT-CTAGTCACAGTCTGAAGTTTTATGATTTACGTCAGGttgcatgaa-------------aaa-aaaagattgta--------caaaaaaaattaagta-aCTTC-----
i cb4.chrX              I 134 C 0
s caeRem4.Crem_Contig0  1582447 302 -  4500979 -----TATAGAAA--AGGAAACG------ACGTCAGCCACAAAAGCTCACAATG----TT-CGAAGAATG---GACGAGACGACCATC-TTTATGCGTAT--AACTTTTCTTATCA--CTGATTTT-AAAATTACTAATCATACGATAAAATCAA-TTGGCAATGAAAAGAAATgcgtatttttttttcaa------aatttgacatcattatttttcttt-----------------tcaagtgtgtcacagtttttcacagtttACAGTTCTTTGCAGGTCACAATCGTAAAT------ATCTAATTGAGATCACATGGGTTGGG------GTAGA-AAGAGGTTGTT--------C-----AAATTAATTC-ACTTC-----
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622   313836 274 +   386604 -----tagaaaaaagaggaaacg------aCGTCAAACAGAAAAGCCCACAATG----TT-CCAATAATG---GTCGAGACGACCATC-TTTATGCTTAA--AACTCTCCTTATCA--CTCGTTTC-GATATTACTAATCATACGATAAAATCAA-TTGGCAA-GAAAGGAAATgcgtattttt---tcaa------tatttgacatcatatttttctttttggaaagatTTGATTCTTCAAGTGTGTCATAGTTTTT----------------------------------------------TAC---AGGTCACATGGTGGGAGTA----ACAGACTGAATGTTGTA--------C-----AAATTAATTGAA---------
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0      2914534 298 +  4147112 -----tataaaaa--aggaaacg------acGTCAAACACAAAAGCTCACAATG----TTCCCAACAATG---GTCGCGACGACCATC-TTCATGCGTAT--AAAGTTTCTTATCA--CTGCTTTT-GAAATTACTAATCATACGATAAAATCAA-TTGGCAA-GAAAGGAAATGcgtattttt---tcca------tatttgacatcatattttttagttt-------ttcaatttctcaagtGTGTCATGGTTCTTT-----------------GCAGGTCACAACTGTACAGTTTTTGGTATAC---AGGTCACATGCTGATGGTAGACGGTAGACAAAAGGTTATA--------C-----AAATTAATTT-A---------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   41547 266 +   591668 aaaaaagaaagaa--aagaaacg------acGTCAA-TGTGAGCGCTCACTACACACTTT-CCAATAATA---ATCG------CTGTC-ATTATGCGTAA--AAAGTGTCTTATCA--CTA------AGAATTACTAATCAGAAAATGAAATCGATTCAGCCA---------ATG-GTATTCct---taaatacatatttttggCATCGTGTTTTCTATGGT-CAGTgactttatttttcaaacgt--cAATGCTTTTT----------------------------------------------AG---TGATAACGTAGAAGTGT------GAAAGTTTGAAATTGTT--------C-----AAATGTTATG-TTTTC----C
i caeJap4.Scaffold17934 C 0 I 1100

a score=-35965.000000
s ce10.chrX             4660814 218 + 17718866 CTTTACTTCAGACACTTCAA-----AGTATTATAGAA--------CAAAAAAATACTAGACGAAGATCATCAA---AGGAAATTGGATTCTGATTCTGAAAGTTGTAGTT-----TT----------------GTGTTTTTTCCTT--------------CTCTA---------ATT-----------ATTCGACACCGAGAGAAAAATATA-----------TAATTTACAGCAAAAAA----------------------AAA--AGATTCAG------------------------------CTCAAAATTTGTA----------AACTTT-------AAATTGATGCATCGGGCTTTCCAAATTGCG
s cb4.chrX              9993571 238 + 21540570 -----------ACATCTTCTTGACAGACA--GGTAAG--------CAAAACAATGGCAGTC--AGATGGGTAG---AGGAAATTGGATTT-----------GCTGTCGTTTTCTATT-----------tggaataactttttttct----ttctcttgttTTCAGACAAGACCTGTT-----------TTTGGAGTC------AGAAGTGTA-ATTATACTCTTTGTTTATATCAGAA---------------------CATAAG--GGTTTCAG----------AAGAACTGCTGacgaaaaagtttcaactttttatGG-------AGTATT-------------ATCCCTC----------ATAGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1582749 239 -  4500979 ------TTTAGACATTTTTT-----Ggca--ataaaa--------gaaaagaatgatgGGC--TGGT-----G---AGGAAATTAGATTCTG-------AAGTTGTAGTT-----TT-----------TGgaattactttttctttcagatgttACTGCGCCCAG---------GTT-----------ATTCAAGTC------AATag---a-agttttgttttgattcatTTAACAAAAT------------ATATTCCCTAAA--GGGTTcag--------------------------taaattttgaattttcataa-------attattCGATTGAAGGTTGATCTATTGGGA-ATCGGAAGGGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314110 272 +   386604 -----------GAACTTTGT-----AGCT--ATTCTCCCCC----GAAAACAAAAGCAATC--GAATGGTAAG----GGAAATGAgattc-------------ttcagtt-----tttgggTGTTAGATGGAAtaacttctttctt--------------ttcagacaAACGACACTGCCGCCATTGGAATGGAGTC------AACTGcttattgttttcattcatctcAC---AAGAAATTGTTTGAGA---ATTtactcaaaaatagaatgaattgttac---------------------------aaaatttcacaaaaaggCAATCTTTAGATTGGAAGTTGATCCATTGGGGTTTCGAAAGTGCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2914832 258 +  4147112 -----------GAACCTTCT-----AGCA--ACtaacttttggaagaaaacaaagacaGTG--AAGTAAAAAGGGCaggaaattagatt--------------ttcagtt-----tc-----------tagaatagctttttttct---------------------------cact-----------aatGAACTT------TACAATCTA--------GTTCACCtgacagtaaaaaaaacgttgagaTCTATTCACTTTGaa--tgaatcagtttttaaTTTGAGGATTATTT-----CGTGTATGAATATTGTACAAACGG---ATTCTgggattgaaaaatgatctaTTGGGA-TTCGAATGGGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   41813 1100 +   591668 I

a score=32878.000000
s ce10.chrX             4661032 55 + 17718866 CCCACTAATC---TGAAGTAAAACGTACGGATTAGGGTCGCTTTCC-CGTTTGAGTCAG
s cb4.chrX              9993809 53 + 21540570 ATCACTAAGCCTGCGGTGTAAAACTGCGGGATTAAGGTCAC------TATATGAGTCAG
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0  1582988 56 -  4500979 TTCACTAAGC---TGGCGTAAAACGTACGGATTAAGGTCATTTCCGATATATGAGTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314382 58 +   386604 TCGACTAAGCT-GGTGTGTAAAACGTACGGATTAAGGTCGTTTCCGATATATGACTCAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2915090 59 +  4147112 TCCACTAAGCTGGGTGTGTAAAACGTACGGATTAAGGTCATTTCCGATATATGAGTCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   42913 48 +   591668 CCAACTAAAT---CTGTGTAAAACGTACGGATTAAAATC--------CATCTGAGTCAC
i caeJap4.Scaffold17934 I 1100 C 0

a score=-886.000000
s ce10.chrX             4661087 47 + 17718866 GAAATGACGGATACAC-GATT---AATACAAGTTGCACTGGGCATTGGTCT
s caeRem4.Crem_Contig0  1583044 43 -  4500979 --AAGATCACTTCCAATGGGC---AATTCAAGTTGCACCAAG--TTAGTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314440 43 +   386604 --AAGATCGGTTGCAA-AGCC---TATTCAAGTTGAACCGAG--CCAGTCC
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0      2915149 46 +  4147112 --TAAATCGGTTCCAA-AGACTATTATTCGAGTTGCACCAAG--TCAGTCC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   42961 21 +   591668 --TAGATCATGCCCAA-CAAA---AAT------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              9993862 35 + 21540570 I

a score=23499.000000
s ce10.chrX             4661134 49 + 17718866 AAAAACGAA---AGAAAGCACCTGTTTGAAAGACACTACCATGGCGACGTA---------A-
s cb4.chrX              9993897 60 + 21540570 aagaaggaatt-gaAAAGCACCTGTTTCAAAGGCAATGCCATGGCGACGTAAGACTCTCCT-
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0  1583087 50 -  4500979 GAAAACGAATA-TGAAAGCACCTGTTTCGGAGTCACTGCCATGGCGACGTG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314484 49 +   386604 AAAAGTAAAAC-GAAAAGCACCTG-TTTCAATTCACTGCCATGGCGACGTG-----------
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0      2915196 51 +  4147112 AGAAGAAAGTTGGGAAAGCACCTGCTTTGGAGTCACTGCCATGGCGACGTG-----------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   42982 49 +   591668 --AATGTAAGC-GAGGACTACCTGTTTGACATGCACTGCCATGACGACGGA----------A
i caeJap4.Scaffold17934 C 0 I 654

a score=-39240.000000
s ce10.chrX             4661183 229 + 17718866 GCCTGCCGACAATTGT--TTGCTGCGTTT----TGTCAT--GAAGTGAA-------------------CTTGGTGGTTGCAGAAAAATTTGAAAAAAAAGAGAGAAAAGTGTAGATTTATATCTATTTC----------AGAAGATTTACAAAGGAATGAGGAAATGCTGAATGGCAGCAGACTTCGCTTGCTGACT-----TCGGG-ATAGAT-TATTGGATTAACTTTAATATTTTATTTAAATCCAAAAGTGAAAAGCA------AGAAGATCACG------
s cb4.chrX              9993957 181 + 21540570 GCCCCATGACAA-------TGAAATTTTCGGGAGGTTCG--GGAAAAGGGTGCT----------------------CTAT-----GACAGCCAATATAAGAGAGTAGGAAATAAGT---------TCTT-------------------TGGAAGGAAATACGACA------GCAACAAAAGGTATGA--TGCATGCTAAAAACTTGC-AAGGATAAATAGGATTCAGTTTGATCCGA-------------------------------AAAGAAGTAAGATTGCG
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0  1583137 137 -  4500979 ---TCAAAGCAA------TTGAAGCTTTC----CGTCcg--ggaagaa-------------------------------------------------aagagaggacAATGCAGTA---------TTTT-------------------TGGGTGGTG--ACGGAA------AGGGCAAACG--------CGCTTTCTAATATCCTGCTGAGGAT-----GGGTGCAA---GATATGA-------------------------------ATGAATGCAAATGGGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314533 204 +   386604 ---CCCAGGCAATTGCTTTTGAAGCCTTT----CGTCAA--GAGAGAAGCGGCTGAACAATGCAATATCCTGGTAGTTGC-----GAGGAGTAAAGGGCGAGAGAAGAAGGTTTGTCTCATTTCCTTCT------------ATGGATGCTAgcagaaagaggaaa------acaacaaaagatTCAA--TAACAATT-----TTCGC-GAAGAT-TATGGGCATT--TTTAATCTG--------------------------------AGAATTATTTA------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2915247 244 +  4147112 ---ACTTGGCAATTGGTTTTCAAGTGTTT----CGTCAAAGAAGGGAAAGACCAGGACAATGAAGTATCCAAGAAGGTG--------GTGGCAAAGAAAAGGACGAGAAGGTAACcctattttcctttttggtATTCGTgaaaggaaatgagaagaaaaaggaaaaaagagacaacaaaagaTCCGA--TTCCTATT-----TTTGC-CGAGAT-TAAAGGGCCTAATTTAATCTGATTTTCG-----------GGAAAACAGCTTTTAGAAATTTATA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I

a score=-9890.000000
s ce10.chrX             4661412 60 + 17718866 ------CCTAGG-----aaaat---aaatattataga-aaagttt---tataa-------------tattaaCCCATTAAACA--------CTGATCAT
s caeRem4.Crem_Contig0  1583274 54 -  4500979 ------CCAAAG-----AAAATATGACGCATGTTTTGCAAAGATT---ATCAA-------------TTCTAGTTTGATGCA------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314737 66 +   386604 TCTTG-CCGAAT-----ATAA----CTGCATTTCCGG-AAGGATTTTGGTTGA-------------CTTTGGGTCAATCCGC---------Cagataaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2915491 92 +  4147112 TATAGTTTGAATGGTGGAAGA----ATGTATTTTT---AAAGATTTCAAACGAATCTTCTACTTTTCTCTAGTGAAATATGCGTTCCGTTTCTGATCAA
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold17934   43031 654 +   591668 I
e cb4.chrX              9994138 33 + 21540570 I

a score=-64311.000000
s ce10.chrX             4661472 227 + 17718866 ----------TAGTCTAGTTCCA-------------------ATCCACCGATCTTGATCTACGTATTAAATCA----GAACAGAAACT------ACGAAAAATCACCAATTATGAGA------TTAtaaagttt-----aaagtttaaagtttaaa-----------------AAACTTTTTCAGGTGTATTCTTATGGGAAATTCAGGAAGAATCAATTTTCAT--------ATTAAAAGTAGAACACAATTCAAAAAACAGTTTTGAATTTTAATAAA---------TAAAAATACAAACATTTTTAGA-
s cb4.chrX              9994171 167 + 21540570 ----------GAGTGTGGTTCTC----------------------------TTTTGACTGACAGATCAAAAAA----GTAGATTAGCTTTTG-AATGAAGACTTGAAGGACGTGAAAAC----TTCTAAAGAAC-----GGAAACTTA-------------------------AAATTTA-----------------------ATAGA-------------ttgt--------ttcaaaatggaaatttg-----------agtttt---tttgccaaaaagt----------aggttcaaaaattgaaaaa
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0  1583328 221 -  4500979 ----------AAATTTAGTTAGA--------------------------------AGCCaacatttggaaaaactttgaagtttATCCT-----ACGAAAAAgttatagttttgaaaattttgttctgaaaaaa-----ataattata----taaaAAAGACATGTGTTCGCGAAATTTA----GTTAC------------GCGTAGACAAAAAACAACTGTTAT--------GTCAGGCGAAAAGTtca----------caattttcgatttcctaGGAAACTGAAC-TCTGATGTGAgaacattttagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314803 172 +   386604 ---------ttgaattgaataaa----------------------------ttctttccaaaataaagaaaaga---gttcCGTTTCTGATC-ACTG--------------TT----------TTCCTGTTACG-----GAAATC-------------------------------TTTT----CGTCT------------AATTAGACATGTGTTCATGCCAATGAGTCTagttagaagaaaaaaagat-----------gttaTTCAGTCAGACGGAAAAgt-----tcagaactt------ttttgtg-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2915597 217 +  4147112 TAGTTTTATTTCCATTAATTAGACATGTGTTCCTGCCGTTGAGTC------TTCTGGTCAGACTGAAAAACAA--------CTTATCTAGTCGGCTGGAAAGtttataacttt----------ttcttgagatgtgcgaaaaatc----------------------------aaacttt----ggTGT--------TGAGAACTTGACACCTactcattcaaat--------ttcaaatgatga----------------------cGATTAGACTGAAAATTAAGCATTAAAACTTGAAAGGtcttgga-
i caePb3.Scfld02_0      I 14 I 20
e caeJap4.Scaffold17934   43031 654 +   591668 I

a score=-7360.000000
s ce10.chrX             4661699 31 + 17718866 ATAGTTCCAGTACGACATGCAAAAA-----------AATATT---
s cb4.chrX              9994338 12 + 21540570 ---------------------aaag-----------tcaaatg-t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1583549 24 -  4500979 ---------------------aatgattatgatttttcagatgat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314975 20 +   386604 ATCGTT-----------TGGGAAAA-----------TGAACT---
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2915814 20 +  4147112 I
e caeJap4.Scaffold17934   43031 654 +   591668 I

a score=-21727.000000
s ce10.chrX             4661730 76 + 17718866 TCTTCTAACAGTATGAGATAAACTTTAAAAAAACTTT------GATTGCCTAATTTTCTGTTG----------------aaatttaaatttaaaat--at
s cb4.chrX              9994350 74 + 21540570 TCTCATAAAA--ATCGGACTTTGGTGTGAGAAATCTA------TGAAAGttatttttccatga----------------aaaatataaCTAAAAATGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1583573 48 -  4500979 ccaaataaaa--aaaggaaatgagtGTGAGTAATATA------GCATATTCATCTT--------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   314995 62 +   386604 --------------------ATGGTGTGAGAACCtatcaattggaaaattttggtttttaa-agtT-------------GAGATGAAGTTTCAAAC----
i caeSp111.Scaffold622  C 0 I 27
s caePb3.Scfld02_0      2915834 70 +  4147112 --------------------TTTTCAAGAAGCACTTTTAAc--gaaaacttactttttcaatagTCCTTCTCCTGGACAAAAATGAA----CATAT----
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I

a score=-1063.000000
s ce10.chrX             4661806 2 + 17718866 ta--
s cb4.chrX              9994424 2 + 21540570 --AA
i cb4.chrX              C 0 I 190
s caePb3.Scfld02_0      2915904 2 +  4147112 TC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I
e caeSp111.Scaffold622   315057 27 +   386604 I
e caeRem4.Crem_Contig0  1583621 0 -  4500979 C

a score=-825.000000
s ce10.chrX             4661808 18 + 17718866 -CTAATAGAAAAACGACGC-
s caeRem4.Crem_Contig0  1583621 19 -  4500979 -CTAAGAGGGGAACGAACGC
i caeRem4.Crem_Contig0  C 0 I 41
s caePb3.Scfld02_0      2915906 11 +  4147112 CCGGAAAGAAG---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I
e cb4.chrX              9994426 190 + 21540570 I
e caeSp111.Scaffold622   315057 27 +   386604 I

a score=49.000000
s ce10.chrX             4661826 12 + 17718866 TAAACTCTTTTG
s caePb3.Scfld02_0      2915917  5 +  4147112 -------TTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I
e cb4.chrX              9994426 190 + 21540570 I
e caeSp111.Scaffold622   315057 27 +   386604 I
e caeRem4.Crem_Contig0  1583640 41 -  4500979 I

a score=-1122.000000
s ce10.chrX             4661838 42 + 17718866 AAAAATTTTCTGATATTGTAAAATTTAAATTGTTTCTTTTTC
s caeSp111.Scaffold622   315084 29 +   386604 AGGGATTTTCCTTGATCAGATAACATGAA-------------
i caeSp111.Scaffold622  I 27 C 0
s caePb3.Scfld02_0      2915922 29 +  4147112 AAAAGTCAGTTCaagtcagaaaaaaggag-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I
e cb4.chrX              9994426 190 + 21540570 I
e caeRem4.Crem_Contig0  1583640 41 -  4500979 I

a score=-24154.000000
s ce10.chrX             4661880 167 + 17718866 ATAAATTATTTTAGTTT---TGACAAGGCAAAAAATCTTTGATAACATAAATTCAAAAAAAAAATTGATAATGATTTTTTGAAATATTTTTTGAGCTCTTATTGTGAAGTTCAAATATT-----TTTCAATATGAAACGGGGTATCCCGCGCTGCCAATCAAC------------------CACATCAGACAG-------------------------------
s caeRem4.Crem_Contig0  1583681 111 -  4500979 ATAAATGATTATAGGTT--------------------------TTCCTATTCTTGCGTA-------TGTAGTCATTTTCTGCAAGCTTAATTATA-TGTTACTGTGGAGATCCcgttct-----tttcaaaaattaatg------------------------------------------aaaatcgaaaa--------------------------------
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold622   315113  74 +   386604 --AA-------TAGATT---------------------------------ATCTCAAAA-------GATCAAGAGTTTCT-TAAGGTCGTCCTT----------------CTTTGGTTT-----TCACAAA--------------------------------------------------GAcgttcaaaatga-----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2915951 201 +  4147112 --aaata--tttagttttgaaaacgaaatttgaaatttatgcaCCCttaaatctaaaaa-------aaaaggaattttttgtatattcaacttt------------gaaaatttactttCTAACTCACAAAAAtaactcatatttttttcattactcaTATCTAGACATAGAGTAAGGTGTGATGTAAAAAGTGAACACGAGGGATTCCCCCAAAgtcagagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I
e cb4.chrX              9994426 190 + 21540570 I

a score=69438.000000
s ce10.chrX             4662047 613 + 17718866  
s cb4.chrX              9994616 601 + 21540570  
i cb4.chrX              I 190 C 0
s caeRem4.Crem_Contig0  1583792 611 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   315187 621 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2916152 714 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43031 654 +   591668 I

a score=63632.000000
s ce10.chrX             4662660 114 + 17718866 GCGC-GGGATCG-------TCAGACAGTGCGCGCATACA-ACGATTTGGCAAATATTCAAGCGCTACAACACGTCGTCCTCT-CCC-AGTTTCTT---TCTCTCT----TCAC-----------------------------------CCCTG--TTTGTTGATGACAC
s cb4.chrX              9995217 146 + 21540570 GGGA-GAGGTAGAATGAGGCTAGACAGT--GCGCGCATA-CT--TTCGGCAAATATTCAAGCGCT---ACACGTCCTTCGAT-CCT-agtttctc---tttctct-tgtTCACTCTCTATTCGATCGGAAAAGTCCTCTCTT------TGCTG--TTTGCTGATGAcac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1584403 110 -  4500979 GCGC-GAGATCG--------TAGACAGT--GCGCATACA-GCGATTTGGCAAATATTCAAGCGCT---ACACGTCCTTCTTTCCCT-agtttctc---ctt--------------------------------ttctctatt------CCCTG--TTTGTTGATGACac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   315808 127 +   386604 GCGC-GGGATCG--------CAGACAGT--GCGCATACA-ACGATTTGGCAAATATTCAAGCGCT---ACATGTCCTTCTTT-CCt-agtttctt---tctctttctcctcac--------------------TATTCTAATGTTCTCCCCTG--TTTGTTGATGACAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2916866 129 +  4147112 GCGCGGGGATCG--------CAGACAGT--GCGCATACATTCGATTTGGCAAATATTCAAGCGCT---ACACGTCCTTCTTT-CCtaagtttcttttctctctctttccccaC--------------------TTTTCTAATGT----CCCTG--TTTGTTGATGACAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   43685 122 +   591668 GCGA-AGGATCG--------CAGACAGT--GCGCGTACA-TCGATTTGGCAAATATTCAAGCGCT---ACACGTTTCTTTTC-CGT-GTGATTCC---TCTCCTTTTCTCTAT--------------------CTTTCTACCTCTCT-CCCAAATTTTGTTGA------
i caeJap4.Scaffold17934 I 654 C 0

a score=1468.000000
s ce10.chrX             4662774 19 + 17718866 agagagatagagagacaga
s cb4.chrX              9995363 17 + 21540570 --agaaatagaaaaataga
i cb4.chrX              C 0 I 3
s caePb3.Scfld02_0      2916995 17 +  4147112 --AGAGATAGAGAGGTTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   43807  8 +   591668 ----AAgtagaa-------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622   315935  0 +   386604 C
e caeRem4.Crem_Contig0  1584513  0 -  4500979 C

a score=2840.000000
s ce10.chrX             4662793 36 + 17718866 agagagagagagagagagagagagagagagagagag
s caeJap4.Scaffold17934   43815 36 +   591668 agagagagagagagagagagagggagagaaatAAAG
i caeJap4.Scaffold17934 C 0 I 1753
e caePb3.Scfld02_0      2917012  0 +  4147112 C
e cb4.chrX              9995380  3 + 21540570 I
e caeSp111.Scaffold622   315935  0 +   386604 C
e caeRem4.Crem_Contig0  1584513  0 -  4500979 C

a score=1860.000000
s ce10.chrX             4662829 52 + 17718866 agagagagagagagagagagagagagagagagagagagagagagagagagag
s caeSp111.Scaffold622   315935 30 +   386604 ----------------------agagatagaaagagagagagagagagagag
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917012  0 +  4147112 C
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9995380  3 + 21540570 I
e caeRem4.Crem_Contig0  1584513  0 -  4500979 C

a score=5107.000000
s ce10.chrX             4662881 22 + 17718866 agagagagagagagagagagag
s caeRem4.Crem_Contig0  1584513 22 -  4500979 agagatagagagagagagagag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   315965 22 +   386604 agagagaaagagagagaaaggg
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917012  0 +  4147112 C
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9995380  3 + 21540570 I

a score=-308.000000
s ce10.chrX             4662903 26 + 17718866 agagagaaagagagaaggagagTAAT
s cb4.chrX              9995383 12 + 21540570 aGACAAAAAGAA--------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0  1584535 12 -  4500979 agagagaatgag--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   315987 11 +   386604 tgAACGAAAGA---------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917012  0 +  4147112 C
e caeJap4.Scaffold17934   43851 1753 +   591668 I

a score=28626.000000
s ce10.chrX             4662929 327 + 17718866 AGGAAAAGGTAGTGCAATGGTTC--------GTCGTTTTCTCG----TTCAAGTTCGCTGAACAAAATGAAAA-----TTGGCGCTG------GT----------GTCTAGAACGAAAAAT---------------AAAAATAACAATCAAATGAAAACCAAAAAT-----------------------------------TGTTGCTTATTTAATTTTTGA-----TATTAGAAATCACTAGACCGA-GAAATATTGA-AAGCAAAAATTCTCCC----G---------------------------TCATTGGTGTCAAGACGCAGAGAGAAAGAGA--------AAAGAAG-----AAGTGCTTCAATTCGCTAGTTCTTT-TGCAC-------TTTTCACTCG-GATGATTTCTGATCTCTTGTGA-----TTTT-----AACTGTCTTTGTCGTTAAATTTGGTGTGTGAAGTTT-------------------
s cb4.chrX              9995395 408 + 21540570 ACGTAAAGTTAGTGCGATTGTTCTTGTTCGAAGTTTTTTCGTGGTGTCTCGAGTTTGCCGAATTGCTT------TTTTCTGGGGTCAAggat-acaaaaaatgaatttaatggagaactgg------------tcaaaaagtgatcaaaaataaagaaaaaaaaac-------------attttcacgTG-----------TCTTTCACTT-GACCTTGCAATGCTATTGCCAAAATAAATGGTCcgt-agaaaagaag-aaaagaaacacGTCAC----GAGGAGTAA----------------------TGtttcgagagacgcagaacgTGAAACACTGGTGTAAAAGAAGCGCTTCAACGTCTC-TTTACTTCGTCCTTTCTGCAC-------TTTTCATTATGGATGATTTTCGATCTCTTGTGGAATACCCTTTTAAGACCTTTCAAGTACACT-CATTCTA---ATCAAGTTTTT-------TATCAAGTTT
i cb4.chrX              C 0 I 94
s caeRem4.Crem_Contig0  1584547 398 -  4500979 ---------taGTGCAATTGTTC--------GGTTTTTCCTCG----CTCAAGTTCGCCGAACAAGATAAAGAATCTTTTGGGGTTGACCGT-CT----------TTCaaagagtaaaaaa------------ccaaaaaagagtaagagagaaaaaaggaaaaaccgaaaagaaTTCGCTTtccgaaag-----------tttttttctt----cgtccAA-------GCCAATCTAAATGGTCCGG-GGAAAAG-----AGAGGCACACGTCACGCgtgaggagaaagagag-----aatttaGT-CTGTTTTTTGGGAGACGCAGGGtcttcaaca-----gaaaaaaaag-----aagcgtCTC-ATCCTTTCGTCCTTT-Tgcactatacttttttcattat-gatgattttcgatCTCTAGTGG--TGGTCTT-----AGCCACCAAGTACATTACATTCTA---ATCAAGTTTCTATTGTAATAAAAAGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   315998 363 +   386604 --------GTAGTGCAATTGTTC--------GTCGTTTTCTCG----CTCCAGTTCGCCGAAGAAGATAGTGAATCTCTTAGGtttgaccac-tt----------ttcaaagaataaaatagagtgtaagaatagaaaaaaaggagagatagaaatgaaaagaaaa--------------aagaagaaag-----------ttttGC------------CAA--------CAAAACGAAATGGTCCCACTTGCAATAAG-GAGAAAGACACGTCAc----ggggaaaagagaaatgccCAATTCAATGTTTCTAAGTGAGAGACGCAGCATGTGCAACA-------AGGAAAAG-----AAGCGCTTC-ATCTTCTCGTCCTTT-TGCAC--------TTTCATTAC-GTTGATTCTTGATCTCTAGTCA-----TCTT-----AACCATTAAGTACACTAGATTTGA---ATCAAGTTT-------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2917012 396 +  4147112 ACGAAAGAGTAG------TGTTC--------GTCGTTTTCTCG----CTCAAGTTCGCCGAACAAGATCGAGAATCTTTTGGGTTTGACCgtatt----------ttcaaagattgaaaatgaatgcgATGTTactaaaagagaaaataagaaaacaagaaaaaaaagagatagatgCACAACAAAAGAGTCAGTGACCCTTTTTGCTCTC----Ttctcaa--------caaaatgaaatggtCCGA-GTGAAATAGGAGAGAAAAACACGTCAC----GCGGAGGTTAGACACCCCCAATTTAACGTCATAATGAGAGAGACGCAGCATGAGCGATG-------AGGAAAAG-----AAGCGCTTC-ATCTTCTCGTCCTTT-TGCAC--------TTTCATTAC-GACGATTTTCGATCTTTAGTGG-----TCTT-----TACC---AAGTACATCACATTCAT---ATCAAGTTT-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43851 1753 +   591668 I

a score=-7340.000000
s ce10.chrX             4663256 70 + 17718866 ------------TCTAAAAGGCAATTGGTTTTGAAAGAAAGTATTGCTAAAA--GTAGTCAA----GTATAGGTA------CTACGCTAAAATT----------------
s caeRem4.Crem_Contig0  1584945 69 -  4500979 TGCA------GCAGCGAA--------------Cagagaaagaaacgaaaaggg-aaaaagaa----aggtGAATAAGATCACTCTGCTCATTTT----------------
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold622   316361 96 +   386604 TG--------ATCGTAAAAGGtc-----tttctgaagaaaagattGAGAAGGT-GAAGAGAACATGAAATAGATAAGATCGCCCTGCTCTTTTTATCTTTGCCCAGACAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2917408 97 +  4147112 TTCACTCTTCCTAACAAAAGACA-----TT--TGCAGAAACGAACAAGACAATAGGAGAGAA----ACAAAGATAACATCA--CTGCTCTTTTTATCTTGTCTTAGACCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9995803 94 + 21540570 I

a score=61036.000000
s ce10.chrX             4663326 247 + 17718866 TTCTAGCCAAAATAATCTTTTCTCT----------------TTTAGTA---TGCATGTTCTTGTGGTTT-TTGTGGTGAACGGAATCAAAAAGGTAAC-----------AAGATATATAATCTAAAATACA----ACGCGA-AAAAAACAAT---CGGATATGAT-TGATAAGGTGATATCAGAATTGAT------AAA---AAGATCACTTCAAATCAAGTGGTGTAGTTATATCTGGGTGTCATCATGAATTAATTTACGTTTGTTTT--ATCAAATTAGTAGGACAAATGCGTAT
s cb4.chrX              9995897 258 + 21540570 TTCTAGACAATCTAATCTTATCTTTTGGAATGTGTCCCtc-ttcgtca--------ttttttttggttatttgtAGTGAACGGAAACAAACcagtttctttgaa-----aaaaggaattatcACACATctagaatgagaaaaaaaacacagataGGAAAAAT--------------GGATATCAATCGGATAGAAGGAA---AAGATCAGTGCAAAACCTTCGG---------AAAGAAACGTCATGGTTAATTATTTCAGGTATGAAATAGATCAAATTAGAGTGCGAAAAACGTGT
i cb4.chrX              I 94 I 3
s caeRem4.Crem_Contig0  1585030 281 -  4500979 TGCTAGACAGTCTAATCTTATCTTCGAGGGTCTCCTCCAC-ATCATCAATATcc--ttttttttagtta-ttgTAGTGAACGGAAACAAACCGG-----TTGTG-----GACAGGTATTATCACACTTTTCggg-aagaaacaaaaaacagttgGAGGACATGATGAGATGAGATAGGATATCAATCGGATAGCAAGAGAATAAGATCAGTTCAAAACTAGCTGTGTAGTTTCATGTGAATGTCACCATGAATTACTTCAGGTATGAAAT--ATCAAATTAGAACGTAAAACGTGTAT
i caeRem4.Crem_Contig0  I 16 I 373
s caeSp111.Scaffold622   316457 272 +   386604 TGCTATCCTATTTAATCTTATCTTTCAgtgtcttttcttcattcaaaa---tcc--ctttttt-ggTTG-TTGTAGTGAACGGAAACCAGCCtctcttttgaagaaagagacaGATATAATCACTCATCAAcaa-atgtg--aaaaaacaat---aggaAATGATGCGAAGAGATGGGATATCAACTG--------AAG---AAGATCAGTTCAAAGTGATCGGTGTAGTTTCATGTGAATGTCACCATCAATTACTTCAGGTatgaaat--atcaaattaGCAGGAAACGTGTATAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2917505 265 +  4147112 TGCTAGACAGTCTAATCTTATCTTTACATGCCTTCTCATC-TTCatta---tcc--tttttttcagtta-ttgtAGTGAACGGAAACAAACCGGTCTTT----------GAGAGGT---ATCACACATCTA-GA-atgtaacaaaaaacaat---aggaAATGATGTGAAGAGATAAGATATCTAATGGAGGGC--GAG---ATGATCAATTCGAATTGG-AGGTGTAGTTTCATGTGAATGTCACCATGAATTACTGAAGGTATCAAAT--ATCAAATTAGATAGAAAAACGTGTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43851 1753 +   591668 I

a score=-987.000000
s ce10.chrX             4663573 4 + 17718866 GCAA--
s cb4.chrX              9996158 4 + 21540570 TCGG--
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_0      2917770 4 +  4147112 --AGAA
i caePb3.Scfld02_0      C 0 I 348
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e caeSp111.Scaffold622   316729 0 +   386604 C
e caeRem4.Crem_Contig0  1585311 373 -  4500979 I

a score=1692.000000
s ce10.chrX             4663577 6 + 17718866 CAATGA
s cb4.chrX              9996162 6 + 21540570 CAATGA
i cb4.chrX              C 0 I 322
s caeSp111.Scaffold622   316729 6 +   386604 CAATGA
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917774 348 +  4147112 I
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e caeRem4.Crem_Contig0  1585311 373 -  4500979 I

a score=-2849.000000
s ce10.chrX             4663583 404 + 17718866 TCTAAATAAATGATTTTTGCAATAGCAAAGATTTTTAAAATATTTAGAGTTGCCAGA----AATGGAATTT---GCAAAATATCATATTTGCAAAATATCATATTATCCAAGCGATCATATTATTTCATTTAAAGTAGCATTGAGTTAATGATGTTTCTAAATTTGAAATAATT---TTTAGGAAAAAAAAACCATTGATATTCGTTTGGGAATCTACTGTCTCCGATTTTGAATTTTTCAAAGATAAGCCTATTTTTCAGATATGTGTACGCAATTTTTGTCAAATGGGATAATTTTTTGTAATATGTTGCCCGGGACTAAAAATAAGAAGTTACTAGAAATCCCCACAACTGATATATCAAAAAAAAACACATTGAAATGTACGGATTGGATAAATTCTAGAAACTTCAAGC
s caeSp111.Scaffold622   316735 254 +   386604 TTAGA------------TGCA--AACACAGGCACGTAGAATCTTGATTTCTGTTGGAGTGCAATCGAATTCCCAGGAAAATATcaaacttctagaa-----------------------------------aaag---------------------ttcaaaactaaaacaCTTTAGTCTAGAGATAAAAGAC--------TCCGT-----AGTTTATCAACCCAAAAT----GTTACTGATCAATCAACGTAtctatc-----------------ttttttgatattagATAAATTC-----------------GGATCAAGAATTAGAAAT-------AATCCAT------------------------------AAGTGTACTGAAT--ATAGACTGAAGTAATTTGAAAc
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917774 348 +  4147112 I
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9996168 322 + 21540570 I
e caeRem4.Crem_Contig0  1585311 373 -  4500979 I

a score=0.000000
s ce10.chrX             4663987 131 + 17718866 GCAAAAATACCCAGGAACTGGGCGGAGCTTTTATTTTGAttttttttttttttttttttCAAAGCATATTTGCAGTATTTCTCAATTTTGCTCTAACATGTTTAACCATGAATATAAAAAATATAACGAAA
e caePb3.Scfld02_0      2917774 348 +  4147112 I
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9996168 322 + 21540570 I
e caeSp111.Scaffold622   316989   0 +   386604 C
e caeRem4.Crem_Contig0  1585311 373 -  4500979 I

a score=-1639.000000
s ce10.chrX             4664118 232 + 17718866 CTAAAATAACCGTTTACAATATACATAAAAATAGATAAATTTATCCAAGTTCGCCAATATCTTGGTTTTTTTGGGTTTTTTACGACTTCAAGTTTCTGGAAATTCGAAACATTTTTTCAATCTCCTAAAACAAGTGGTCTAAAAAAACCTTATCCGCATTTTAAGTTGTAAACAAGCAACAAAGTTTCTTTTTCTTTTATTTCTATATTTTAAATTCACCTTGGCACAATAG
s caeSp111.Scaffold622   316989 121 +   386604 ctaaaacaatttttgatgagttGTATGTATATATCTGAATCAGATCAAATt---------------------------------------------------------acactctt----ttttttcaaacaa-------aaaaacaagatattcgca----aaactgaaaaaaaactgaaa-----------ctctCATTTC----------------------------G
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917774 348 +  4147112 I
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9996168 322 + 21540570 I
e caeRem4.Crem_Contig0  1585311 373 -  4500979 I

a score=932.000000
s ce10.chrX             4664350 27 + 17718866 CGGAGTTTGTCAGAATTATAAATTCAA--
s caeRem4.Crem_Contig0  1585684 27 -  4500979 CGGAACAAGGCggaattaaaaattcaa--
i caeRem4.Crem_Contig0  I 373 C 0
s caeSp111.Scaffold622   317110 25 +   386604 ----TTGAGACTGAATCgtaaattttgaa
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0      2917774 348 +  4147112 I
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9996168 322 + 21540570 I

a score=368.000000
s ce10.chrX             4664377 26 + 17718866 GAATCACATGTGCGGC-----T-AGTGCAACG
s caeRem4.Crem_Contig0  1585711 29 -  4500979 gaatcaTACGGCATGC---TTTGAGAGCAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   317135 24 +   386604 gaat----gcGCTGAC---ACT-AGACCAATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2918122 31 +  4147112 GAATCAAAAGGCAGGCATGACT-AGACCAATA
i caePb3.Scfld02_0      I 348 C 0
e caeJap4.Scaffold17934   43851 1753 +   591668 I
e cb4.chrX              9996168 322 + 21540570 I

a score=75125.000000
s ce10.chrX             4664403 446 + 17718866  
s cb4.chrX              9996490 457 + 21540570  
i cb4.chrX              I 322 C 0
s caeRem4.Crem_Contig0  1585740 465 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622   317159 445 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2918153 435 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   43851 1753 +   591668 I

a score=61399.000000
s ce10.chrX             4664849 162 + 17718866 TGTGTTGTGTTTTCCTGAACTCTGA--------TCGGACAACACCG-----AAAAGT----TTAACAATAGGAA-AAAGCG-----ATAATTTGCACTC-------AGTAGTGCACGCCTT---GTGGTGCG---TTTT------------GTGCGCGAC---CAGATGACCGCATACACACTAAGAAGGAACTTGATCAT--GAGCAAAGTCCA
s cb4.chrX              9996947 195 + 21540570 TGTGTTGTGTTCCTCTGAACTCtgatcgaaaattcga--aaagtcgttgaaaaatgt----tgaacaaTGGGGA-AAAGAG-----ATAATTTGCACTCACTAGTCAGAAACGCACGCCCCTTAGCGGTGCAAAGTTCT---CCGG-----CCGCGCAGCTGACAGACCCATACATACATACCAAGAAGAAACTGGAGCATGAGAGCAGAGTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0  1586205 178 -  4500979 TGTGTTGTGCTTTCCTGAACTCtgg--------acaa--aaaatgtttggaaaaagt----tGAACAATGGGAACAAGGAG-----ATAATTTGCACTC---------AAGTGCACGCCCC--AGTAGTGCAAACGTCGGAATTGG-----TCGCGCAGCTGACTAAGAATTATACACATAATAAGAAGGAACTAAAGTAT--GAGCAAAGTCCA
i caeRem4.Crem_Contig0  C 0 I 303
s caeSp111.Scaffold622   317604 164 +   386604 TGTGTTGTGTTTCCCTGAACTCTGA--------TCGA--AATGTCG-----GAAACT----TGAACAAAGGGAAAATGGAG-----ATAATTTGCACTC-------AGCAGTGCACGCCCC--TGAGGTGCAAActttg-aattgagaa--aagcgCAGCTGACTAAGAACCGC-----------AAATGAAC--ATATAT--GAGCAAAGTTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2918588 178 +  4147112 TGTGTTGTGTTTCTCTGAACTCTGG--------TCAG--AATGGTG-----AAACat----tgaacaaaagaaaattggaga----ataatTTGCACTC-------CATAGTGCACGCCCA---GCGGTGCAAACTTTG-AATTGGGAGGTGCGCGCAGCTGACTAAGAATCGCGTATA-ACTAAGAAGGAACTAAGGCAT--GAGCAAAGTCCA
i caePb3.Scfld02_0      C 0 I 537
s caeJap4.Scaffold17934   45604 162 +   591668 TGTGTCGTGTTTTTCTGAACTTTGT--------TCAG--AAAGACG-----CAATACGGAGTGAACAAGGGGAGGAGGAAGAAAGGAGAAATTGCACTC-------GGGAGTGCACCCGCA--GACGGTTCT---TTGT------------GCACGCTGGCGGCTAGCAATTGT------ACTACGCAGGAGC------AT--GCGCGAAGCGCA
i caeJap4.Scaffold17934 I 1753 I 2887

a score=-731.000000
s ce10.chrX             4665011  9 + 17718866 -GTACAAATT---
s cb4.chrX              9997142 13 + 21540570 CTGAGAGAATATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622   317768  9 +   386604 -TTATAAACT---
i caeSp111.Scaffold622  C 0 I 3831
e caePb3.Scfld02_0      2918766 537 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e caeRem4.Crem_Contig0  1586383 303 -  4500979 I

a score=376.000000
s ce10.chrX             4665020 14 + 17718866 ACTAAAGAGATCAA
s cb4.chrX              9997155 14 + 21540570 GTAAAGGATATTAA
i cb4.chrX              C 0 I 772
e caePb3.Scfld02_0      2918766 537 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e caeSp111.Scaffold622   317777 3831 +   386604 I
e caeRem4.Crem_Contig0  1586383 303 -  4500979 I

a score=0.000000
s ce10.chrX             4665034 1003 + 17718866  
e caePb3.Scfld02_0      2918766  537 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9997169  772 + 21540570 I
e caeSp111.Scaffold622   317777 3831 +   386604 I
e caeRem4.Crem_Contig0  1586383  303 -  4500979 I

a score=637.000000
s ce10.chrX             4666037 54 + 17718866 TACTTTTGA---AAAGAATACTCTTTTTGCAACGATGGAAATAGATGTGAAGTATGT
s caeRem4.Crem_Contig0  1586686 55 -  4500979 tatttttgaccGAATGAACATTCTCC--GAACCCATCGAGATAATTGTTCACTACAA
i caeRem4.Crem_Contig0  I 303 I 5
e caePb3.Scfld02_0      2918766 537 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9997169 772 + 21540570 I
e caeSp111.Scaffold622   317777 3831 +   386604 I

a score=17216.000000
s ce10.chrX             4666091 141 + 17718866 AGACCCTTATCTTTTGGTCTTTGAATTTGACCGTTTTG----AGCAAATAAAAAGCACGTGTCTCAGAGAC-----AAAGAGAA-GTTTCTCTGCATCAAT-------TTTTAGTGAAAACAAAGCGCAAATCTT-----TCTA--AAATACAAATCTTC----ATCTT-----
s cb4.chrX              9997941 161 + 21540570 AGGCACTTATCTTTCGGTATACG----TAGTCAATGTGTGTTTGTATACAGAAATCACGTGCTCCAGAGACAA---AAAGACAATGGTTTTTCAAAGAAGCATTGCTCTTTTTTCCGAAACAAAA-GAATATCCTAATTGTTCAGCGACAACAGCTTTTTCC--ACTTCTT---
i cb4.chrX              I 772 C 0
s caeRem4.Crem_Contig0  1586746 149 -  4500979 AGGCACTTATCTTTCGGTCTTTC----CGTTCGTAGTG----TGTAAACAGCAATCACGTGCTCCAGAGACAAAGGAAATGCAA-AGTTTGTCAACGTagcat-----ctttttttgaaacaaaa-gacTATCCT-----TCCA--AAATACAACTCTCCCTGAAGCTCCT---
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0      2919303 148 +  4147112 AGCCACTTATCTTTCGGTCTTTC----CGTCCGTAGTG----TGCAAATATCAATCACGTGCTTCGGAGACAAAAGAAAGACAA-AGTTTGTTGAAAcaac-------ttcttttgaaaacaaaa-ggatAGTCA-----TTCA--AAACACAGTCCATCCA--GCTTCATCTT
i caePb3.Scfld02_0      I 537 I 8950
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e caeSp111.Scaffold622   317777 3831 +   386604 I

a score=4785.000000
s ce10.chrX             4666232  82 + 17718866 TCTAGTC----CAATGAAACAGT-------CTCG-------------GT------------AGCTCAAAGAACGTTTAGGTAGAGAACCATGTCTTGTGCTCTTTTGTTTGCAACATT
s cb4.chrX              9998102 105 + 21540570 TTTCGTCGGAGCaaaaaaaCAGTGCAGAAGATTGC------CAGGATGT--GCGAAG----GGTGCAAAGAACAGCCAAGACCA-AACCATGTCATGTGCTCGCACCTTGGTAACACT
i cb4.chrX              C 0 I 12868
s caeRem4.Crem_Contig0  1586895 116 -  4500979 TGTTGTCCGAGCAACAAAACAGTGAAGAA-ATCGCCACGAGCAGGTTGTTGGTCAAGCAGCGGAGCAAAGAACAGTCGGTTTGA-AACCATGCCTTGTGCTTGCACGCTTGTAACATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0      2919451 8950 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e caeSp111.Scaffold622   317777 3831 +   386604 I

a score=91.000000
s ce10.chrX             4666314 1 + 17718866 T
s caeRem4.Crem_Contig0  1587011 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 8839
e caePb3.Scfld02_0      2919451 8950 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9998207 12868 + 21540570 I
e caeSp111.Scaffold622   317777 3831 +   386604 I

a score=0.000000
s ce10.chrX             4666315 1077 + 17718866  
e caePb3.Scfld02_0      2919451 8950 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9998207 12868 + 21540570 I
e caeSp111.Scaffold622   317777 3831 +   386604 I
e caeRem4.Crem_Contig0  1587012 8839 -  4500979 I

a score=707.000000
s ce10.chrX             4667392 50 + 17718866 GGTTTATGCTTGAAAATGTATGACTCAGAAAAAAGCTTCCTCATAAACTA
s caeSp111.Scaffold622   321608 49 +   386604 GGTCTATCCTTGAACAT-TCCAAATGAACAGATACGCTCCTCAAGTACTT
i caeSp111.Scaffold622  I 3831 C 0
e caePb3.Scfld02_0      2919451 8950 +  4147112 I
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9998207 12868 + 21540570 I
e caeRem4.Crem_Contig0  1587012 8839 -  4500979 I

a score=999.000000
s ce10.chrX             4667442 31 + 17718866 -CTCATTTTGAAGTGAGTAATGAGTATTAG-GA
s caeSp111.Scaffold622   321657 32 +   386604 CCTTATACC-AGATGAGTAATACATTCAAACTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2928401 31 +  4147112 -CTTATTCT-AAATGAGTAATCCTCCCAAACAg
i caePb3.Scfld02_0      I 8950 C 0
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9998207 12868 + 21540570 I
e caeRem4.Crem_Contig0  1587012 8839 -  4500979 I

a score=683.000000
s ce10.chrX             4667473 3 + 17718866 TGA
s caeRem4.Crem_Contig0  1595851 3 -  4500979 TGA
i caeRem4.Crem_Contig0  I 8839 C 0
s caeSp111.Scaffold622   321689 3 +   386604 Tca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0      2928432 3 +  4147112 tta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   45766 2887 +   591668 I
e cb4.chrX              9998207 12868 + 21540570 I

a score=28859.000000
s ce10.chrX              4667476 383 + 17718866 GGAAGAAAGTCAAAC-AACGACAATTGAACCTACAT----AAAT----GGCGAATGC--AATGCAG-ATT-ACAACCGGATTTTTT--ATGTCGTCGCAGGAAGAAAA-GATTTCATATTTATTGAATTGATTTTTTATCTTTGATTTGTTCCTATCCTTGT-----ATTTCA---AAAAAAAAGAA---TTTTTGTTATCAGTATATACT---TTTGTTTGTTTTGattttaattttaaaatattagtttaaataattga-tgtaataaatttttttttCAGAAATGTTGATTAAAGTAACGTCTTT-----ATTTGTCTCTTTCCG------TCGTTTTAT------------------------TTTCAGAGTAT---------TGGTCGATTTTTGTCTTGTT------------------TTGTGAAATAAAAAAACAA--------------T-TATTTCGAAATAGGCACAGTTGCATCTACAT
s cb4.chrX              10011075 370 + 21540570 GGAAGATAG-AAAAGAAATGTCTAGTAAACCT--------AGAGACGAAAAGGATATAGGACGCAGCATTAACaaccggatttttttcatcgCG-CGCAGGAAGAAAACgatgtgaatttttttgaattgatttctCATCTTTGAATT-CTTTCTTCCTCATCAGA-GATTGACCGTTTATAAACAA---C-----tgttcagtattt--------------tttttctgtcattt----gCTCTGCATAAAAACAGGTGAGTAtggaaac----------------------------aactttttttttggtttttttctttttcagtttcattgtttggtttct--------------------tttccttcagtgtagcagtgttgtttttatttATCATTGTGAAatgta------------aaaaagaaaa----tga--------accTGCTGTTCCACATAACAAACAgc-----------gg
i cb4.chrX              I 12868 C 0
s caeRem4.Crem_Contig0   1595854 397 -  4500979 GGAAGAAAATAGAACAAACGACAAGGGAACCT--------AGAG----AGAGGATAC--GATGCAG-ATTAACAACCGGATTTTTT--ATGGCG-CGCAGGAAGAAAACGatgtgaaattttttgaattgatttctCATCTTTGATTTGACTTCTTCCTCATCAGACTATTGA---TATATAAATTA---CAAATATATTCAATAgttct----ttcaaaagtttttctgttgGTTTTCGGTTAGACACAAAAA-AGGTGAGTATGAAAAACCGATGT------------------ATGaacgttgtt-----ttttttgcatttatagtt---ttgttttgttttcgaaaagaggaattttttctgtttctttctgt---------ttccgattgtttATCATACTAAAATATACA--------ATGAAAAGAAAGGT--TGC--------ACCCGCT-CCCTTCATAACAAACACa-----------ag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    321692 359 +   386604 ggaagaaaatagaac-aaTGACAATTGAAcctagagagagagag----agagggtgT--AATGCAG-ATTAACAACCGGATTTTTT--ATGTCG-CGCAGGAAGAAAACgatgtgaaattttttgaattgatttctCATCTTTGATTTGCCTTATTCCTCAGTAGGTTTCTTG---TATATAAGTCT---C-----CCATCAagttttctctatttttccaatttagCTTTT---------------ACTAAA-----TAAACAGGTGATATTTTC--------------------gtgaatgttttt-----tttgttccatcTTTA-------------GCGT----------------------TTTTCTATTA----------ACATCATTGTTTATCGCATTGATGCATACCTAAACACGCTGGAAAGCAGCATAGTGC--------ATCAGCT-TGTTTCATAACAAACAAG-----------CA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2928435 393 +  4147112 ggaagaaaa-agaac-aatgaCAACCTAA-----------AGAG----AAGGGATGT--GACGCAG-ATCAACAACCGGATTTTTT--ATGTCG-CGCAGGAAGAAAACgatgtgaaattttttgaattgattccTCATCTTTGATTTGACTTCTTCCTCAGCAGCCACCCCA---TATATATATTTAAAC-----CTCTaaatatttgttcaatttttgaaatttgcttTTCATTCCCACCGGAGAACTGAATCAGGTAAATGtttgagactttttt-------------gtttggtttctGTTGTT-----TCTGTTCCACTTCCATAT---TTGAACCGTGT----------------------TTTCATTGTA----------TCACTGTTTTGTATGCCAATAGTTCATATC--AATAGAAtgataagcaaaaaaaagccGGAGAAGAGTTGCT-TATTTCATAACAAATGcg-----------cg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    45766 2887 +   591668 I

a score=82375.000000
s ce10.chrX              4667859 151 + 17718866 ATGGCCTAGAATTCCTGCGTCCTT--TTTCGCTTTTC---------------GGGTGGTCAATGCCT--------------------CTGACTCACTAG-----------GGATATGTGTTTACACAATTGATTTTAACCTGACCGC----AATTT-GAACGAAAGAGTTCAGTTTCAAAAACTAAATGTTTATATTATTTCTA---
s cb4.chrX              10011445 168 + 21540570 gtggcctagaattccgcCGTCTTT--TTTCCGCTTTTAC-------------GGGCACTGAGTGCCTTCTCTCTCCACTCTTCCCTACTGACTCACTAG-----------GGATATGTGTTTACACAATTGATTTTGACCTGACCGC----TATTT-GAA--ATAGAGTTCAGTTTCAAACGACAATTGTTTa---tatttcaa---
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   1596251 148 -  4500979 atggcctagaatttcTGCGTCCCT--TTCCGCTTTTTAC-------------GGACACTCAGCGCC---------------------CTGACTCACTAG-----------GGATATGTGTTTACACAATTGATTTCGACCTGACCGC----TATTTAGAA--ATAGAGTTCAGTTTCAAACAtcaaatgttta---tattttca---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    322051 144 +   386604 ATGGCCTAGCATTCCGGCGtcctt--ttccgtttttcgc-------------GGACACTCAACTCTC--------------------CTGAC----TTG-----------GGATATGTGTTTACACAATTGATTTTGGCCTGACCGC----AATTT-GAA--ATATAGTTCAGTTTCAAACACCaaatgttta---tttatttc---
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0       2928828 152 +  4147112 atggcctagaatttatGCGTcctt--ttccgctttttttcg-----GAGAG-GGGCACTCTGCGCCCT-------------------CTGACTCAGTCG-----------GGATATGTGTTTACACAATTGATTTCGACCTGGCCGCt---tattg-aaa--acagaattcagtttcaa-----aaatgttta---tatttGAT---
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934    48653 170 +   591668 ATGACCTAAAACTTCTGCGTCCCTCGTTCCTCATTTTTCCGCTTGCGAAAGCGACCACTCA--------------------------CTGATTCATCGGCCGGTGGATTTGTGTTTGTGTTTACACAATTGATTTCAACATCAACGCTTTGCACTG-TGA--ATGAAGTTCATTTCCTA-----AAATGTTTA---TTTGAAAACCA
i caeJap4.Scaffold17934 I 2887 C 0

a score=-6104.000000
s ce10.chrX              4668010 18 + 17718866 TTCTTTTAGCACGCCT--CA
s caeRem4.Crem_Contig0   1596400 12 -  4500979 ------tcaaactgTT--AC
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold622    322197 13 +   386604 -----ttcgaaaattt--ca
i caeSp111.Scaffold622  I 2 I 6
s caePb3.Scfld02_0       2928982 15 +  4147112 -----TTCCAACATTTAGCA
i caePb3.Scfld02_0      I 2 I 6
s caeJap4.Scaffold17934    48823 13 +   591668 Ccctttttgttct-------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10011613 19 + 21540570 I

a score=36433.000000
s ce10.chrX              4668028 96 + 17718866 TTTGATTTTCCTTTCATTGTTTGATT---TTT-CAGGATGACAGACGAAGAAACAGAAGGAGATGTTGTTCCAGTAAGGTCTTGTGACGACGTAAGCTTT
s cb4.chrX              10011632 84 + 21540570 ----TTCTATTTTATATTCATT--CG---TTTGCAGAATGAGTGAGGA------GGATGCAGATGTTGTTCAAGTTAGGCCGTGTGAAGATGTAAG-CTG
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   1596414 91 -  4500979 ---AATTTACTCCACGTGCTTT--CA---TTT-CAGGATGAATGAAGAAGAACCGGAAAGAGACGTTATTCAAGTACGTCCATGTGAGGAAGTAAGTTTA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    322216 88 +   386604 ------ttctcccattttcctt--tt---ttt-caggatgaatgaagaagaccAAGAAGGAGACGTAGTTCGAGTGAGACACTGTgaagaagtgagtttt
i caeSp111.Scaffold622  I 6 I 20
s caePb3.Scfld02_0       2929003 91 +  4147112 ------tttcacaaaatttctt--ttttattt-cagaatgaatgagGAAGAACAAGAAGGAGATGTAGTTCGAGTGAGGCAGTGTGATgaagtgagtgtt
i caePb3.Scfld02_0      I 6 I 2
s caeJap4.Scaffold17934    48836 89 +   591668 -----ttttttcccccTTTCAT--TC---TTG-CAGAATGAACGAAGAAGAACAAGAAGCCAATGTTATTCGAGTGAGACCTACTGAACATGTAAGACTA
i caeJap4.Scaffold17934 C 0 C 0

a score=-10095.000000
s ce10.chrX              4668124 27 + 17718866 --------------------TTTGTCCCTAAAAATGTT-------------------GACCTGAAA
s cb4.chrX              10011716 19 + 21540570 --------------------TTTG-------AGGTGCT--------------------TCTTGTTA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1596505 20 -  4500979 --------------------TTTT-------AAATGGT-------------------AAAATATCA
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       2929096 39 +  4147112 --------------------tttg-------agaagagaaggaggagggagTCAGAGAAAGTGTAA
i caePb3.Scfld02_0      I 2 I 8
s caeJap4.Scaffold17934    48925 26 +   591668 TTTTTCTTATCATTTCTCcattta-------aa---------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    322304 20 +   386604 I

a score=150576.000000
s ce10.chrX              4668151 258 + 17718866 TTGAAAAAC--TGAA----------ATTCAGATTGTTATACCTAGAAGATCGATTCGTCCGGACCATGATATTAGTTTCACCAAAAAAATTGCTTTTGGTATGTTTTTTTTCTGTAATATTATATTTAAAAATAGCA--------TTATT---CT----AGGTATCGGCCATTTTTACAATGATCTCTGCGCAAGCATGTGGTTTACATATTTCATGATTTATATGGAAAAAGTATTAAAATTTCAAAGTAGTCGAGCTGGAATGTTAATGCTGATTGGGCAGGT
s cb4.chrX              10011737 264 + 21540570 --CAAATATCTTGAA----------TTTCAGGTAGTTGTTCCTAGAAGAAATGTGCGGCCAGATCATGATATCAGTTTTGCCAGAAAAATTGCTTATGgtaaatttttc--------ttctttattgGATAATAACTtatcaaactcaaaattctttc-AGGGGTTGGACATTTTTATAATGATTTATGCGCCAGTATGTGGTTTACGTATCTGATGATCTATatggaaaaagttttgaagctaCAAAGCAGTCGAGCCGGGATGCTAATGCTCATAGGACAGGT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1596527 262 -  4500979 --CGCATatttcacaaca-----tttttcagttggtAGTTCCCAGAAGAAATGTTCGCCCAGATCATGACATTAGTTTCTATAGGAAAATTGCATATGGTTCGTTTTGcaacta--attattttttag--aataatt--------tcaaa---ttttc-aggagtTGGACATTTTTACAATGATTTGTGTGCAAGTATGTGGTTTACATACCTGATGATATATAtggagaaagttttgaaattacaaAGTAGTCGAGCCGGAATGTTAATGCTTATTGGACAGGT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    322324 251 +   386604 ttgagaaAC-----A----------TTTCAGGTGAATGTTCCGAGAAGAAACGTTCGCCCCGATCATGACATCAGCTTCACTAGAAAAATTGCATATGGTAAGGG-CTAACTTT--ATTTTAATTCTAAAAGTTAAT--------TTATA---C-----AGGAGTTGGCCATTTTTACAATGATTTATGCGCGAGTATGTGGTTTACTTACCTGATGATTTATATGGAAAAAGtgttgaaatttcaaagcaGTCGAGCAGGAATGTTGATGTTGATAGGACAAGT
i caeSp111.Scaffold622  I 20 C 0
s caePb3.Scfld02_0       2929143 260 +  4147112 --GTAAAATTTCGGA----------CTTCAGGTTGTGGTGCCCCGAAGAAATGTTCGTCCAGATCATGATATCAGTTTTCCAAGAAAAGTTGCATATGGTAAGggttttgattg--gtttttttttcaaaaatgaat--------ttatt---catTCTAGGAGTTGGCCATTTTTACAACGACTTATGTGCGAGTATGTGGTTCACTTATCTCATGATCTATAtggagaaagttttgaaatttcaaagtagTAGAGCTGGATTCCTGATGTTAATAGGACAGgt
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934    48951 246 +   591668 ----------------tacattttttttcaggaaaatgtACCTAGAAGAAATATCCGACCTGATCATGACATCACTTTTCCAAAGAAAATCGCTTATGGTAAATAATCAAA-----ATTAATTCccttaaaattgtt--------tt------tt----aggCATTGGACACTTTTACAACGACTTGTGCGCAAGTATGTGGTTTACTTTTTTGATGATCTACTTGGAAAAAGTTCTCAAGTTTAGGAGCAGCAGAGCGGGTTTGCTTATGCTAATTGGACAGGT
i caeJap4.Scaffold17934 C 0 I 1092

a score=910.000000
s ce10.chrX              4668409 1 + 17718866 A
s cb4.chrX              10012001 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1596789 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    322575 1 +   386604 A
i caeSp111.Scaffold622  C 0 I 15
s caePb3.Scfld02_0       2929403 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold17934    49197 1092 +   591668 I

a score=-3223.000000
s ce10.chrX              4668410 1 + 17718866 --A
s cb4.chrX              10012002 1 + 21540570 -T-
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   1596790 1 -  4500979 -A-
i caeRem4.Crem_Contig0  C 0 I 32
s caePb3.Scfld02_0       2929418 1 +  4147112 c--
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17934    49197 1092 +   591668 I
e caeSp111.Scaffold622    322576 15 +   386604 I

a score=1457.000000
s ce10.chrX              4668411 19 + 17718866 TAAAAAACT------TTTGAAAAAT
s cb4.chrX              10012019 21 + 21540570 aaaaaaact----atttcgcAATAC
i cb4.chrX              I 16 C 0
s caePb3.Scfld02_0       2929419 24 +  4147112 -tAAAAACTCATACTTTCGAAATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    49197 1092 +   591668 I
e caeSp111.Scaffold622    322576 15 +   386604 I
e caeRem4.Crem_Contig0   1596791 32 -  4500979 I

a score=206.000000
s ce10.chrX              4668430 7 + 17718866 TATCAGG
s caePb3.Scfld02_0       2929443 7 +  4147112 CACAAGG
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold17934    49197 1092 +   591668 I
e cb4.chrX              10012040 0 + 21540570 C
e caeSp111.Scaffold622    322576 15 +   386604 I
e caeRem4.Crem_Contig0   1596791 32 -  4500979 I

a score=0.000000
s ce10.chrX              4668437 1840 + 17718866  
e caePb3.Scfld02_0       2929450   40 +  4147112 I
e caeJap4.Scaffold17934    49197 1092 +   591668 I
e cb4.chrX              10012040    0 + 21540570 C
e caeSp111.Scaffold622    322576   15 +   386604 I
e caeRem4.Crem_Contig0   1596791   32 -  4500979 I

a score=518.000000
s ce10.chrX              4670277 18 + 17718866 GGAGCTAATAGTACtaaa
s caeJap4.Scaffold17934    50289 18 +   591668 GGAGCGCAAGGAAATAAA
i caeJap4.Scaffold17934 I 1092 C 0
e caePb3.Scfld02_0       2929450 40 +  4147112 I
e cb4.chrX              10012040  0 + 21540570 C
e caeSp111.Scaffold622    322576 15 +   386604 I
e caeRem4.Crem_Contig0   1596791 32 -  4500979 I

a score=94.000000
s ce10.chrX              4670295 24 + 17718866 aaatagaaaaaaatttaattaatc
s caeSp111.Scaffold622    322591 13 +   386604 aaaaagaaaaaaa-----------
i caeSp111.Scaffold622  I 15 C 0
s caeJap4.Scaffold17934    50307 22 +   591668 --CAATGAAAAAGTGTAACTGTTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2929450 40 +  4147112 I
e cb4.chrX              10012040  0 + 21540570 C
e caeRem4.Crem_Contig0   1596791 32 -  4500979 I

a score=-1442.000000
s ce10.chrX              4670319 5 + 17718866 -tataa
s caeRem4.Crem_Contig0   1596823 5 -  4500979 -TATAA
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold622    322604 4 +   386604 --gcaa
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    50329 5 +   591668 TTTCA-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2929450 40 +  4147112 I
e cb4.chrX              10012040 0 + 21540570 C

a score=90.000000
s ce10.chrX              4670324 1 + 17718866 t
s caeRem4.Crem_Contig0   1596828 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    322608 1 +   386604 g
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2929490 1 +  4147112 T
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17934    50334 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10012040 0 + 21540570 C

a score=194074.000000
s ce10.chrX              4670325 300 + 17718866 tttCAGGTGACAGACGCAATTTCCACTCCGTTAGTTGGGATATTCAGTGACTCTAACATACTTCCTGCGTGTTTTGACAAAATTGGAAGAAGGATGTCATGGCATCTCATAGGTTTT----------------------GTTTATTTTTCGTTG-------CGCACATTTTGTATAA---------------------------------ACT----AATTTAGGTACCGTGTTGGTTTCTTTATCATTTCCTATGATTTTCAATAAATGTTTTTTGTGTAAGAGTACTACTTCTGAATGGCTAAAAGTACTCTGGTTTGTTCCGTTTATTATGGTGTTTCAATTTGGATGGGCTTCAGTACAGGT
s cb4.chrX              10012040 254 + 21540570 TTTCAGGTGACAGACGCTATTTCCACTCCACTGGTGGGAATATTCAGTGATTCCAGTATTTTACCGACATGTTTTGATAAAATTGGGAGGAGAATTTCATGGCATCTTATT----------------------------------------------------------------------------------------------------------------GGAACCATATTGGTGTCTATCTCGTTCCCGATGATTTTCAATAGGTGCTTCCTATGTAGAAGTGATACGTCGGAGTGGTATGAAATGCTGTGGTTTGTTCCATTTATCatggtttttcaatttggatGGGCTTCTGTGCAGGT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   1596832 254 -  4500979 CTATAGGTGACTGATGCAATTTCCACTCCACTTGTAGGAATATTCAGTGATTCAAGTATACTACCCTCGTGGTTTGATAAAATTGGAAGGAGGATATCATGGCATCTAATC----------------------------------------------------------------------------------------------------------------GGTACCATATTGGTATCAATATCGTTTCCCATGATTTTCAATAGATGCTTCCTATGTAAAAGTGATACGTCAGAATGGTACGAAGTACTGTGGTTTGTACCATTTATTatggtttttcagtttggatGGGCCTCTGTACAAGT
i caeRem4.Crem_Contig0  I 3 I 28
s caeSp111.Scaffold622    322609 297 +   386604 tTTTAGGTGACAGATGCAATTTCAACTCCATTAGTAGGAATATTCAGTGATTCTAGTATTCTTCCAGCATGTTTTGACAAAATTGGACGGAGGATATCATGGCATTTAATTGGTAAA-----------------------TTGAATAATTATC----------TGTATTCTgatgaa--------------------------------cttt----ttctcagGAACTATTCTGGTGTCAGTATCCTTTCCTATGATTTTCAACAGATGTTTTCTATGCAAAAGTGACACATCTGAATGGTACGAAGTACTATGGTTCGTTCCATTTATTATGGTTTTCCAGTTTGGATGGGCTTCTGTACaggt
i caeSp111.Scaffold622  C 0 I 15
s caePb3.Scfld02_0       2929491 301 +  4147112 TTATAGGTTACCGATGCAATTTCCACCCCTCTAGTTGGAATATTCAGTGACTCTAGTGTACTTCCTGCTTGCTTTGACAAAATTGGAAGGAGGATATCATGGCATCTTATTGgtaaa----------------------ctttgattttcaac----------taGGACTTCAAGAA-----------------------------ATGCTAT----ATTTTAGGTACAATACTCGTTTCAATCTCATTTCCTATGATCTTCAATAGATGTTTCTTATGTAAAAGTGATACATCAGAATGGTTGGAAGTACTTTGGTTCGTACCATTCATTATGGTTTTCCAATTTGGTTGGGCCTCTGttcaggt
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17934    50335 360 +   591668 ----AGGTGACTGATGCTATTTCGACGCCCCTTGTTGGAATCTTCAGCGATTCAAATATTCTTCCCAAATTCTTCGATAAAATCGGAAGACGGTTGTCATGGCATTTAATTGGTTAGTTAGTTGTTTGAATctagaaactttttttcttgatcGTAAAAATCAAATGTTcttgcaaaaattattttacgAACATCCccgtttttcaatgttttacCAATTTTAGGCACCGTACTGGTTTCAATATCATTTCCCATGATCTTCAACAGGTGCTTCCTTTGTAAAAGCGACACATCAGAATGGCTCAAAGTTATTTGGTTTGTCCCGTTTATCATGGTTTTTCAATTTGGATGGGCATCTGTTCAG--
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4670625 3 + 17718866 AAG
e caePb3.Scfld02_0       2929792 31 +  4147112 I
e caeJap4.Scaffold17934    50695 0 +   591668 C
e cb4.chrX              10012294 9 + 21540570 I
e caeSp111.Scaffold622    322906 15 +   386604 I
e caeRem4.Crem_Contig0   1597086 28 -  4500979 I

a score=-1160.000000
s ce10.chrX              4670628 104 + 17718866 AGTTTTGCAGTGTTTTCGGACGGTTTTCATGAAAAATTTAGCTGTTCGATATCCAAATTTTTGATCAAAACTTCCAAAAATTATTTAGTTTTTGTAAACAAATA
s caeJap4.Scaffold17934    50695  38 +   591668 ---------GTGCTTATTAATGTTTCTCAT---------------------------------------------------------ATTTTTATAAGGAGGTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2929792  31 +  4147112 I
e cb4.chrX              10012294   9 + 21540570 I
e caeSp111.Scaffold622    322906  15 +   386604 I
e caeRem4.Crem_Contig0   1597086  28 -  4500979 I

a score=0.000000
s ce10.chrX              4670732 289 + 17718866 TTTTGAACAATGCAAAAATCAACAACTGAAAGTTTAGAGAAAAATTGAGAAAGTTAGGTTCGGGCACCTTTTGTTGGAAACTCCAAAAATGTAGTTTCCTTGCATTCTATCAGTTTGCACCTGGATGTATTTTTTTTTGTTGCGATATGTTTGTTCTCATGCTGGTAGTTATGAAAATACCAAAACCATAAAAAAACTTGCAAGTGAAATATATATTTTATGAAATAGGCAGCTTCGAAATTTGGTAAATTTTCCGTCACATGTAAAATTTATTTATTGACAGTTTACA
e caePb3.Scfld02_0       2929792  31 +  4147112 I
e caeJap4.Scaffold17934    50733   0 +   591668 C
e cb4.chrX              10012294   9 + 21540570 I
e caeSp111.Scaffold622    322906  15 +   386604 I
e caeRem4.Crem_Contig0   1597086  28 -  4500979 I

a score=377.000000
s ce10.chrX              4671021 11 + 17718866 TAAATTTGAAG
s cb4.chrX              10012303 11 + 21540570 TAaaatagaat
i cb4.chrX              I 9 C 0
e caePb3.Scfld02_0       2929792 31 +  4147112 I
e caeJap4.Scaffold17934    50733  0 +   591668 C
e caeSp111.Scaffold622    322906 15 +   386604 I
e caeRem4.Crem_Contig0   1597086 28 -  4500979 I

a score=-807.000000
s ce10.chrX              4671032 16 + 17718866 TAATTACCCAATTCCC----
s cb4.chrX              10012314 16 + 21540570 gaaaaattgaattccc----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    322921 13 +   386604 -------tGACTATCcacat
i caeSp111.Scaffold622  I 15 C 0
e caePb3.Scfld02_0       2929792 31 +  4147112 I
e caeJap4.Scaffold17934    50733  0 +   591668 C
e caeRem4.Crem_Contig0   1597086 28 -  4500979 I

a score=937.000000
s ce10.chrX              4671048 5 + 17718866 AATAA
s caeRem4.Crem_Contig0   1597114 5 -  4500979 aaaaa
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold622    322934 5 +   386604 aaaaa
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2929792 31 +  4147112 I
e caeJap4.Scaffold17934    50733 0 +   591668 C
e cb4.chrX              10012330 0 + 21540570 C

a score=118.000000
s ce10.chrX              4671053 2 + 17718866 TA
s cb4.chrX              10012330 2 + 21540570 aA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1597119 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2929792 31 +  4147112 I
e caeJap4.Scaffold17934    50733 0 +   591668 C
e caeSp111.Scaffold622    322939 0 +   386604 C

a score=51351.000000
s ce10.chrX              4671055 96 + 17718866 TTTTA----TTACAGATATCTCATTTGGCTCTAATTCCCGAATTATCCTCCGTACCCGCAAGCAGAGCCACTATGAATTCCTTAAGGTTGGATGATTTGT
s cb4.chrX              10012332 77 + 21540570 ---TG----TTCTAGATTTCCCATCTTGCCCTCATCCCAGAACTATCGTCTGTTCCATCCAGCAGATCTACTATGAACTCGTTA----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1597121 94 -  4500979 ttttt----ttctagatttctcATCTGGCCCTTATTCCTGAATTATCTTCTGTACCCTCCAGCAGAGCCACTATGAATTCATTGAGGTAGTAAA--TTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    322939 92 +   386604 --tat----ttttagatttctcATCTTGCCCTCATCCCAGAGTTATCATCTGTTCCTTCTAGTAGAGCAACAATGAACTCATTGAGGTATAATC--CGGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2929823 92 +  4147112 --TATTGAATTTTAGATTTCGCATCTTGCCCTTATCCCAGAATTATCATCAGTCCCCTCGAGTAGAGCTACTATGAACTCTTTGAGGTACGTTC------
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17934    50733 93 +   591668 TTTGA----TTTCAGATCTCACACCTATCGTTGATTCCAGAACTTTCTTCTGTACCATCGAGTAGAGCTACTATGAACTCTTTGAggtgtgttt--tgt-
i caeJap4.Scaffold17934 C 0 I 50

a score=-4339.000000
s ce10.chrX              4671151 16 + 17718866 AACTGAACCCATT-----------CAT
s caeRem4.Crem_Contig0   1597215 16 -  4500979 CCTTTTATGTATT-----------TCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    323031 16 +   386604 CGGTTAATGAGAC-----------ACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2929915 24 +  4147112 ---TCAATGGAAATGTaccttttgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    50826 50 +   591668 I
e cb4.chrX              10012409  0 + 21540570 C

a score=136081.000000
s ce10.chrX              4671167 292 + 17718866 TTTGAAAAGCTTCAGATATGCTTTCACAGTCATTGCAAATTTATCAGTTTACTTTGCACTGGCATGGCTTCTCTCAGAATCTACAGGACATACTTCAATAGGGCCATGGGATTTCAGTCATTTTAGGGTGAGTACTTTTTTAAAAATTGTTGCGAAACGTTTTTTTAAAGAAAACCCGCCATATTTCAAATTTCAGCTAGCAGGATGGCTAGTAGTGGTTCTGGGAATTACCGTAGCTTTTGTGTTTTATGCATTTACCAGGGAACCAACCAATTATCGACGGTTCAGGTAC
s cb4.chrX              10012409 257 + 21540570 -------------AGATACGCATTCACAGTTATTGCAAACCTATCCGTCTATTTTGTGCTAGCCTGGCTACTGTCGGAATCTACCGGACATTCTGGAATTGGCCCGTGGGATTTGGGACATTTTAGGGTGA----------TAAAATCTTAA-----------TTAAAGGCAAAATTATATAAGTTT-CTTTTCAGTTATCCGGCTGGCTAGTGGTGATTCTTGGAATAACAGTTTCTTTTGTGTTCTACGCATTTACCAGAGAGCCAACAAACCAAAGAAGGATCAGGTAA
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   1597231 270 -  4500979 ATT-TAAGTTTACAGGTATGCATTCACTGTGATAGCAAATCTCTCGGTATTTTTTGCACTCGCCTGGTTATTATCAGAATCTACAGGTCACTCAACTATTGGACCGTGGGATTTGAGTCATTTTAGGGTAAG--------ctagaatttttg------aacttttgaaaataatcttAATTGA-------CTTAAGATCGCAGGATGGTTAGTAGTTATTCTTGGTATCACCGTGTCATTTGTGTTTTACGCGTTTACCAGAGAACCAACAAACCAGCGAAGGATAAGGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    323047 269 +   386604 ATT---ACTTTTCAGATATGCATTCACTGTGATTGCAAATCTTTCTGTTTACTTTGCACTAGCCTGGCTTTTATCTGAATCCACCGGACATTCAACTATTGGACCATGGGATCTAGGCCACTTCAGAGTGAG------AGCAGAcgttttca------gaacatttcATGAAtgatta-------tc-attttcagttagCTGGATGGTTAGCCGTAATTCTTGGTATAAGTGTTTCATTTGTATTCTATGCATTTACCAGAGAACCAACTAATCAAAGGAGAATGAGGTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2929939 271 +  4147112 atcggaatgTTTCAGATATGCATTCACTGTAATTGCCAACCTTTCAGTGTTTTTCGTACTGACTTGGTTGTTATCAGAATCTATAGGACACTCTGCAATCGGACCTTGGGATTTGGGGCACTTCAGGGTGAG---TCTTGCAAGAAAGCTTA------GGTTCTAACCTGAATAGTTA------------TTCCAGATGGCCGGATTGTTAGCAGTCGCTCTAGGTATCAGTGTGTCATTTGTTTTCTATGGGTTAACTagagagccaaaaaatcagagaaggCTCAGGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    50876 264 +   591668 ttttaaacttttcagaTACGCGTTCACTGTTATTGCTAACTTATCCGTATTCTTTGCACTGTTTTGGTTACTGTCAGAATCTACTGGACACTCTTCAATAGGACCTTGGGATTTTAATCACTTTAGAGTTTGTTTGCctttctaaattattt-----------ttacaaactcaatt-------------tttaagCTTGCGGGATGGTTAGTTGTTATTCTCGGAGTTGCAGTGTCCATTTTGTTTTACACATTTACTAAAGAGCCTGTCAACCAAAGAAGGCTCAG----
i caeJap4.Scaffold17934 I 50 C 0

a score=1422.000000
s ce10.chrX              4671459 2 + 17718866 GT
s caeRem4.Crem_Contig0   1597501 2 -  4500979 GC
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622    323316 2 +   386604 GT
i caeSp111.Scaffold622  C 0 I 33
s caePb3.Scfld02_0       2930210 2 +  4147112 GT
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17934    51140 2 +   591668 GT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10012666 34 + 21540570 I

a score=-5362.000000
s ce10.chrX              4671461 31 + 17718866 ----------TCGGAAAA------GTCCAAAATAATGCAATAAAAAA
s caeRem4.Crem_Contig0   1597512 26 -  4500979 ----------ATAGAATA------CTTATta----ttaatcaaaaa-
i caeRem4.Crem_Contig0  I 9 I 5
s caePb3.Scfld02_0       2930223 26 +  4147112 ----------tcagaaaa------ttttctaagcCTGGACTA-----
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17934    51142 43 +   591668 TTGTATGAATCTGGAAAAGTgtacttttttcagttttccccAA----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10012666 34 + 21540570 I
e caeSp111.Scaffold622    323318 33 +   386604 I

a score=0.000000
s ce10.chrX              4671492 2 + 17718866 CT
e caePb3.Scfld02_0       2930249 0 +  4147112 C
e caeJap4.Scaffold17934    51185 0 +   591668 C
e cb4.chrX              10012666 34 + 21540570 I
e caeSp111.Scaffold622    323318 33 +   386604 I
e caeRem4.Crem_Contig0   1597538 5 -  4500979 I

a score=314000.000000
s ce10.chrX              4671494 545 + 17718866  
s cb4.chrX              10012700 548 + 21540570  
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   1597543 546 -  4500979  
i caeRem4.Crem_Contig0  I 5 I 2
s caeSp111.Scaffold622    323351 541 +   386604  
i caeSp111.Scaffold622  I 33 C 0
s caePb3.Scfld02_0       2930249 547 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    51185 558 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=1386.000000
s ce10.chrX              4672039 2 + 17718866 CT
s cb4.chrX              10013248 2 + 21540570 CT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    323892 2 +   386604 CT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2930796 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    51743 2 +   591668 TT
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1598089 2 -  4500979 I

a score=46211.000000
s ce10.chrX              4672041 45 + 17718866 CACTGTCAATCACGGCTGATCTGATAAACAAGAATACAGTTAGTT
s cb4.chrX              10013250 45 + 21540570 CGCTATCAATCACAGCTGATTTAATCAACAAAAATACAGTGGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1598091 45 -  4500979 CACTGTCAATCACAGCTGATCTGATCAACAAAAATACAGTGAGTT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    323894 45 +   386604 CGCTGTCAATCACAGCTGActtaattaataaaaatacagtgagtt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2930798 45 +  4147112 CGCTGTCAATCACTGCCGATCTGATTAATAAAAACACTGTGagtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    51745 45 +   591668 CATTGTCAATTACTGCTGACTTGATTAATAAGAATACGGTTagtt
i caeJap4.Scaffold17934 C 0 C 0

a score=964.000000
s ce10.chrX              4672086 2 + 17718866 TT
s cb4.chrX              10013295 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    323939 2 +   386604 tt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2930843 2 +  4147112 at
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    51790 2 +   591668 tt
i caeJap4.Scaffold17934 C 0 I 18
e caeRem4.Crem_Contig0   1598136 0 -  4500979 C

a score=546.000000
s ce10.chrX              4672088 1 + 17718866 T
s cb4.chrX              10013297 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    323941 1 +   386604 t
i caeSp111.Scaffold622  C 0 I 108
s caePb3.Scfld02_0       2930845 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 54
e caeJap4.Scaffold17934    51792 18 +   591668 I
e caeRem4.Crem_Contig0   1598136 0 -  4500979 C

a score=0.000000
s ce10.chrX              4672089 4 + 17718866 TTTT
e caePb3.Scfld02_0       2930846 54 +  4147112 I
e caeJap4.Scaffold17934    51792 18 +   591668 I
e cb4.chrX              10013298 0 + 21540570 C
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598136 0 -  4500979 C

a score=0.000000
s ce10.chrX              4672093 16 + 17718866 CGTTTTTTTTTTCATG
e caePb3.Scfld02_0       2930846 54 +  4147112 I
e caeJap4.Scaffold17934    51792 18 +   591668 I
e cb4.chrX              10013298  0 + 21540570 C
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598136  0 -  4500979 C

a score=169.000000
s ce10.chrX              4672109 45 + 17718866 GGGTATTTGGAAGACGATTTAAAGCAATATAAAATGATATATTAA-
s cb4.chrX              10013298 38 + 21540570 --ATATTTGAAAG-----TGGAAGTGTTGGGAAAtgttgaattga-
i cb4.chrX              C 0 I 212
s caeJap4.Scaffold17934    51810 39 +   591668 AAATATTTGAGAA-----AAACAGTAATATACAACA--GAATAGAA
i caeJap4.Scaffold17934 I 18 C 0
e caePb3.Scfld02_0       2930846 54 +  4147112 I
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598136  0 -  4500979 C

a score=55.000000
s ce10.chrX              4672154 4 + 17718866 CTGG
s caeJap4.Scaffold17934    51849 4 +   591668 CCGT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2930846 54 +  4147112 I
e cb4.chrX              10013336 212 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598136 0 -  4500979 C

a score=64.000000
s ce10.chrX              4672158 29 + 17718866 --TATGAAA-------AGAAATAAGGTGACATAC----AAAA
s caePb3.Scfld02_0       2930900 33 +  4147112 --TACAAAA-------GTAACTAAAGTGACAGATCTGAGACA
i caePb3.Scfld02_0      I 54 C 0
s caeJap4.Scaffold17934    51853 38 +   591668 CATGCAAGAACtagatagaactgctacgacgtaa----aaca
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10013336 212 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598136  0 -  4500979 C

a score=29.000000
s ce10.chrX              4672187 1 + 17718866 T
s caeRem4.Crem_Contig0   1598136 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934    51891 1 +   591668 t
i caeJap4.Scaffold17934 C 0 I 152
e caePb3.Scfld02_0       2930933 0 +  4147112 C
e cb4.chrX              10013336 212 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I

a score=-1504.000000
s ce10.chrX              4672188 68 + 17718866 TTATAAAA------AAGAGTTTTAAAGTTGCATTCAAATTTGAAGTTGACAGTATAAAAACAGGCTTGCTGAAA
s caeRem4.Crem_Contig0   1598137 51 -  4500979 TTATTGAA------AGGA---------------ACAGGTGTGAATGAG--AGAGTAAAATCACGTTTTGTAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2930933 60 +  4147112 --TTTGAATATGTGAGAA----------TTCGCACAATtcggaatttg--agaaaaatattgaattagTGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    51892 152 +   591668 I
e cb4.chrX              10013336 212 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I

a score=-28846.000000
s ce10.chrX              4672256 128 + 17718866 AA-ATAGGCAACACTTTAACTGAAAAA----------ATAGGCAAC-ACAAAAATAGG--------------------CAACACCTACGATTTTACCTAAACC-----------------------------TAAATTCCTGAACTTAGCA-----------ATATCGACCAA-----AATTTA---------------GAACTTGTCTATAGACTCAAG
s caeRem4.Crem_Contig0   1598188  41 -  4500979 A------------------------------------------------GAAAAT-----------------------Tatcaaagaaaat--------------------------------------------atattaacatagaaaa-----------aagtt-----------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2930993  90 +  4147112 A-------------TTT--------------------ATAGTGAAC-acgaaaat-----------------------tttgatcgataattt---------------------------------------gaaattttgacagtCAGGA-----------TTGTTGTATCT-----AATC-----------------ACAGTTTTCTACAAACTGGG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    52044 213 +   591668 -gaatgggtaatttcttttcaaaaacacattttgttgagaaaaaactatgaaaatgcgtcttaataaaaaaaaactaataacaaatatattttcgcgctaaccgtagtctgtcaaaatcgtcgcgagaccagccaacttttgccccaaaaattcaccgcgttttgtcgctcattcacgaatccataataaacatttcactaatttttttccaaa------
i caeJap4.Scaffold17934 I 152 C 0
e cb4.chrX              10013336 212 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I

a score=-13330.000000
s ce10.chrX              4672384 50 + 17718866 ACTAAAAGTTAAATTTTAAATT----TAACGCAAACAGAAAGCTTTTCTTTTTT--
s cb4.chrX              10013548 24 + 21540570 ------------------------------gttaaaagaaaaactttgaagttt--
i cb4.chrX              I 212 I 20
s caeRem4.Crem_Contig0   1598229 35 -  4500979 ------------atctcAGAT-------ATGCCAAACAAGAATCCCTCTTTTCT--
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       2931083 21 +  4147112 ---------------------------------AATGGAGGAATTCAGGCCGGC--
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934    52257 52 +   591668 ----agtaatggttttgaaattttcatcaAATTCATTTCAAATGCCTcacttttcg
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    323942 108 +   386604 I

a score=-6609.000000
s ce10.chrX              4672434 33 + 17718866 -GGCAAAGTCTTCCAAATATCGCTATCACAAAAA------------------------------
s cb4.chrX              10013592 26 + 21540570 -gacaaa-------aaCTATCAGTACCTGAAGAA------------------------------
i cb4.chrX              I 20 I 57
s caePb3.Scfld02_0       2931108 11 +  4147112 --------------ATATATAAATA---------------------------------------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934    52309 60 +   591668 agaaaaatac----atttagaaaaactagaaaactTTTGAGAAATTCTGAAAAGAGCACAGTTG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598264  1 -  4500979 I

a score=-5224.000000
s ce10.chrX              4672467 82 + 17718866 AGAGTCTTAAATCACAAT---ATTTCC-ATTGTGCTCACAGGAGCATGCGCACATTGCAATTTA--TCTGTG------CACAACGAGATACGAT
s caePb3.Scfld02_0       2931119 71 +  4147112 A----CTAAGATCTTAATCTCATGTTA-ACAGTGCT-ACCTCAGCTTTGGTAC--TGCAGACTAATTTTTTG------CACTATG---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    52369 84 +   591668 ACGGTATAGACTCACAGC---GTGCTAGACTCTACCTAAAAGCGAACGCGCCC--TGTcgtatt--tctctgcgtctccgcagtgGTGTTC---
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10013618 57 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598264  1 -  4500979 I

a score=0.000000
s ce10.chrX              4672549 3 + 17718866 TAA
e caePb3.Scfld02_0       2931190 0 +  4147112 C
e caeJap4.Scaffold17934    52453 0 +   591668 C
e cb4.chrX              10013618 57 + 21540570 I
e caeSp111.Scaffold622    323942 108 +   386604 I
e caeRem4.Crem_Contig0   1598264 1 -  4500979 I

a score=-21677.000000
s ce10.chrX              4672552 64 + 17718866 ACGAATTTGAAAAAAAAAAGAAAATTG----GATTTCAAGAACATTATCAA-------------------------CGTCACATCTAATCATG
s cb4.chrX              10013675 20 + 21540570 -----------------------------------------ACTTTgttgg-----------------------------aaaactgaaa---
i cb4.chrX              I 57 C 0
s caeRem4.Crem_Contig0   1598265 17 -  4500979 --------------------------------------Acgaatttttca-----------------------------------taaaa---
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       2931190 28 +  4147112 ------TTAAAAAATGTAA----------------TCTCTGACTATATTG-------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    52453 81 +   591668 ------TTGCAAGAGACGCGAGAAACGACACGCTTTCAGAAACATTGTCAAAAAGCTAGCCTTGCGCATTCTTTAGCCGAATAAATG------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    323942 108 +   386604 I

a score=246070.000000
s ce10.chrX              4672616 292 + 17718866 TTTTA--------------------------CAGGAAAGTGGAGCATTTGTTTACGGAGCAATGAGCTTTTTCGACAAACTTTCAAACGGAATCGCTTATCAGCTGATCGAATTATGGACTCCCGCTTATGAGTAAGTA----C---TTCGTT-----GTTTGTTATACAAGACAATAACTTAAAGATTATGAT--------TTACAGCGCGCTCAAACCACACGAAGTAAGCGCGATTTTTTATCGACGAGTGATGGTATTCGTACCCGGAACATGTCTGGTCCTTGCGTTTTTGGTTCTCTTATCGCTGGCACCATTTAAAATAGGGGAGAGGAGA
s cb4.chrX              10013695 295 + 21540570 --ttt--------------------------caggaaagcGGCGCCTTTGTCTACGGAGCGATGAGCTTTTTCGACAAACTCTCAAACGGAATCGCTTATCAAATTATCGAATTGTGGACCCCCGCCTACGAGTAAGTG----T---GTTGTT--TGTGTTTGCTCTATTAACCAACA-TTTGGGGATTATGATTTA-----TTACAGTGCTCTCAAACCACATCAAGCGAGTGCCATTTTTTATCGACGAGTGATGGTATTCGTACCCGGAACATGCTTGGTCCTTGCCTTTCTGGTTCTCTTATCACTGGCACCATTCAAGATTGGCGATAGGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1598282 294 -  4500979 --ttt--------------------------caggaaagTGGTGCTTTCGTCTACGGAGCAATGAGCTTCTTTGACAAACTTTCAAACGGAATCGCTTATCAAATCATTGAATTGTGGACTCCCACTTATGAGTAAGTA----CTAAGTTGTT--TGTGTCTGTGATGTGAGACAAAA--TTGAGGATTATGAT--------TTACAGCGCCCTCAAACCACATCAAGCGAGCGCCATTTTTTATCGACGAGTGATGGTATTCGTACCCGGAACATGTTTGGTCCTTGCCTTTTTGGTTCTCTTATCTCTAGCTCCTTTCACAATTGGAGAAAGGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    324050 286 +   386604 ttttc--------------------------taggaGAGCGGAGCATTCGTCTACGGAGCAATGAGCTTCTTTGACAAACTGTCAAACGGAATCGCTTATCAGCTCATAGAATTATGGACTCCTGCTTACGAGTAAG------T---GTTATT--TCTGTTTGTTTTATGAGT-------CTGAAGCTTATGGT--------TTGAAGCGCCCTCAAACCTCATCAGGCAAGTGCCATATTCTATCGACGAGTGATGGTATTCGTACCCGGAACATGCTTGGTCCTTGCCTTGTTGGTTCTCTTATCACTTCTTCCATCTCAAATCGGGGAAAGGAGA
i caeSp111.Scaffold622  I 108 C 0
s caePb3.Scfld02_0       2931218 294 +  4147112 TTTTC--------------------------CAGGAAAGTGGAGCGTTTGTCTACGGAGCAATGAGCTTTTTCGACAAACTCTCAAACGGAATCGCTTATCAACTCATCGAATTATGGACTCCTGCTTACGAGTAAGTGCATTT---GTTGTTTGTGTGTTTGCTTTGTGAAC-------TTAGAGATTATGAT--------TTACAGTGCTCTCAAACCACATCAAGCGAGCGCCGTTTTTTATCGACGAGTGATGGTATTCGTACCCGGAACATGCCTGGTCCTTGCCTTGCTGGTTCTCTTATCGCTTGCACCATTCAAAATTGGcgagagaaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    52534 306 +   591668 --TTCTGGCAAAATACCGTTAAATACATAAACAGGAAAGTGGAGCATTCGTATACGGAGCAATGAGctttttcgacaaattgtccaATGGAATCGCTTATCAGTTGATAGAGTTATGGAATCCTGCTTGCGAGTAAGTT----C---CCGGTT-----ATTT------------------CAAGAAGTGGTAATTTCTTCCTTTTCAGCTCTCTCAAACCACATCAGGCTTGCGTCATTTTTTACCGTGATCTAATGGTGTACGTACCCGGAGCATGTTTGGTTCTCGCTCTTCTGATTATTTTATCTCTCGCACCATACAAAATTGGtgaaaggaga
i caeJap4.Scaffold17934 C 0 I 866

a score=-5615.000000
s ce10.chrX              4672908 62 + 17718866 CGTGCACGTCCTGGTAGGAAATTTTTAACTT---TAGAAGAGAGCTCAAAGCAATGC---TTATTATT-----
s cb4.chrX              10013990 63 + 21540570 CGAGCACGTCCTGTTCGAGG----------TTCGAAATTTATTGCCCAGAATACTGTAGCTTAACATTCTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1598576 63 -  4500979 AGAGCACGTCCTGTTAGAGG--------TATACATAAtatgaaatcagaaataatACA--TTCATATATAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    324336 56 +   386604 CGAGCACGGACTGTTAGAGG----------T---AACTAGAAAGACTTAGCTGTCTctgggaaa-atgaa---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2931512 57 +  4147112 agagcacGTAATAATAGAGG----------T---GAGGACAAAGTCCGAAATAAAGTTGCTACATATGAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    52840 866 +   591668 I

a score=41214.000000
s ce10.chrX              4672970 55 + 17718866 TTTCAGAAGATGAACAGGCAATTATGGAAGACCAAGATGAC---ATCTACCCTGAAAT
s cb4.chrX              10014053 55 + 21540570 TTTCAGATGATGAACAAGCTATTCTGGATGACCAGGATGAC---TTGTATCCGGAGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1598639 58 -  4500979 TTTCAGATGACGAGCAAGCTATTCTAGACGACCAAGATGACGATGCATACCCGGAAAT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    324392 55 +   386604 tttcagatgacgAACAAGCAATCCTAGAAGACCAAGATGAT---TTGTATCCGGAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2931569 55 +  4147112 CTTCAGATGACGAGCAAGCCATTCTCGATGATCAAGATGAC---GTCTATCCAGAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    53706 56 +   591668 ttttagACGACGAGCAAGCGGTTTTGAATGATAACGATGACG--ACGAGTTTTCAAAT
i caeJap4.Scaffold17934 I 866 C 0

a score=-1179.000000
s ce10.chrX              4673025 10 + 17718866 -----TGTAGAATAA-----
s cb4.chrX              10014108 10 + 21540570 -----CACAGCTTGA-----
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold622    324447 10 +   386604 -----TGCTGACTAA-----
i caeSp111.Scaffold622  C 0 I 413
s caePb3.Scfld02_0       2931624 10 +  4147112 -----CACTGCATAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    53762 20 +   591668 CATAATGATGTCTGAAAtat
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1598697 11 -  4500979 I

a score=-1007.000000
s ce10.chrX              4673035 2 + 17718866 -CG
s caePb3.Scfld02_0       2931634 2 +  4147112 -CC
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17934    53782 2 +   591668 tt-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10014118 2 + 21540570 I
e caeSp111.Scaffold622    324457 413 +   386604 I
e caeRem4.Crem_Contig0   1598697 11 -  4500979 I

a score=-5022.000000
s ce10.chrX              4673037 52 + 17718866 AAGCtttaa-------tttgattattta------------aaataatttat-------CACTTT-------TCCT----------GTTGATCATG
s cb4.chrX              10014120 74 + 21540570 --TTGTTTACGATGTATTTAATAATTTA--TTACTGTTCATAATAATTTAT-------CTCTTTCCTACGGTCAT----------AATGGTTCTT
i cb4.chrX              I 2 I 47
s caeRem4.Crem_Contig0   1598708 59 -  4500979 AAACTTTAACTATAGCTTTAATGATT--------------TAAtaatttat-------cacttttt-----ccAT----------AATCATTTCC
i caeRem4.Crem_Contig0  I 11 I 59
s caePb3.Scfld02_0       2931673 77 +  4147112 GATTTTTCATTACTGCTTTAATGACCTATGTTAC------TATTTATTTATAGAAAAGCAATGAACAAC--TCAC----------TGTGATTTTT
i caePb3.Scfld02_0      I 37 I 37
s caeJap4.Scaffold17934    53784 71 +   591668 -------aattgtgtatttatttatttattt---------atttaatttat------tcCCTCTTTGAT--CCATACATACAtgcattgaatttt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    324457 413 +   386604 I

a score=246793.000000
s ce10.chrX              4673089 806 + 17718866  
s cb4.chrX              10014241 841 + 21540570  
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   1598826 846 -  4500979  
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold622    324870 816 +   386604  
i caeSp111.Scaffold622  I 413 I 3
s caePb3.Scfld02_0       2931787 847 +  4147112  
i caePb3.Scfld02_0      I 37 I 35
s caeJap4.Scaffold17934    53855 966 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=90.000000
s ce10.chrX              4673895 1 + 17718866 T
s cb4.chrX              10015082 1 + 21540570 t
i cb4.chrX              C 0 I 367
s caeRem4.Crem_Contig0   1599672 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325689 1 +   386604 T
i caeSp111.Scaffold622  I 3 C 0
s caeJap4.Scaffold17934    54821 1 +   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2932634 35 +  4147112 I

a score=1676.000000
s ce10.chrX              4673896 11 + 17718866 TTTATTATTTT
s caeRem4.Crem_Contig0   1599673  8 -  4500979 ---CTtgttat
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    325690 11 +   386604 TGTATCGTTTT
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    54822 11 +   591668 tgttttctttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2932634 35 +  4147112 I
e cb4.chrX              10015083 367 + 21540570 I

a score=-409.000000
s ce10.chrX              4673907 5 + 17718866 -TAATT
s caeRem4.Crem_Contig0   1599684 5 -  4500979 -aaatt
i caeRem4.Crem_Contig0  I 3 C 0
s caeJap4.Scaffold17934    54833 5 +   591668 cagat-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2932634 35 +  4147112 I
e cb4.chrX              10015083 367 + 21540570 I
e caeSp111.Scaffold622    325701 0 +   386604 C

a score=410.000000
s ce10.chrX              4673912 8 + 17718866 GCAAGATT
s caeJap4.Scaffold17934    54838 8 +   591668 gcaaattt
i caeJap4.Scaffold17934 C 0 I 16
e caePb3.Scfld02_0       2932634 35 +  4147112 I
e cb4.chrX              10015083 367 + 21540570 I
e caeSp111.Scaffold622    325701 0 +   386604 C
e caeRem4.Crem_Contig0   1599689 0 -  4500979 C

a score=0.000000
s ce10.chrX              4673920 859 + 17718866  
e caePb3.Scfld02_0       2932634  35 +  4147112 I
e caeJap4.Scaffold17934    54846  16 +   591668 I
e cb4.chrX              10015083 367 + 21540570 I
e caeSp111.Scaffold622    325701   0 +   386604 C
e caeRem4.Crem_Contig0   1599689   0 -  4500979 C

a score=253.000000
s ce10.chrX              4674779 12 + 17718866 AAACTAACTTTA
s caeRem4.Crem_Contig0   1599689 11 -  4500979 aaactTGCTT-A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2932634 35 +  4147112 I
e caeJap4.Scaffold17934    54846 16 +   591668 I
e cb4.chrX              10015083 367 + 21540570 I
e caeSp111.Scaffold622    325701  0 +   386604 C

a score=-1413.000000
s ce10.chrX              4674791 15 + 17718866 ACTTTATATTACATT----
s caeRem4.Crem_Contig0   1599700 15 -  4500979 -ACTCA-AT--GGTTCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325701 14 +   386604 ATTTTA-ATCaggtt----
i caeSp111.Scaffold622  C 0 I 3
e caePb3.Scfld02_0       2932634 35 +  4147112 I
e caeJap4.Scaffold17934    54846 16 +   591668 I
e cb4.chrX              10015083 367 + 21540570 I

a score=2600.000000
s ce10.chrX              4674806 6 + 17718866 TATTTA
s cb4.chrX              10015450 6 + 21540570 TATTTC
i cb4.chrX              I 367 C 0
s caeRem4.Crem_Contig0   1599715 3 -  4500979 ---TTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325718 6 +   386604 aatttc
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0       2932669 6 +  4147112 taTTTC
i caePb3.Scfld02_0      I 35 C 0
e caeJap4.Scaffold17934    54846 16 +   591668 I

a score=40698.000000
s ce10.chrX              4674812 64 + 17718866 AGGATGCATTACCGGTTGGACTTATTTTTTCACTCAAGACTTATGCATCGTTTTATTTGGT--AAG
s cb4.chrX              10015456 64 + 21540570 AGGACGCCCTACCAACCGGATTGTATTTCTCTCTCAAAACTTATGCATCTTTCTATCTGGT--AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1599718 64 -  4500979 AGGATGCTCTTGGTGTTGGATTATATTTTTCGGTCAAAACATATGCATCGTTTTATTTAgt--aag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325724 66 +   386604 aggatGCTTTACCGACAGGactgtatttttctttcaaaacataCGCTTCATTTTACTTGgtaaaag
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2932675 64 +  4147112 AGGATGCTCTTGCTACTGGTTTATACTTCTCCTTCAAAACATACGGTTCTTTTTATCTCGT--GAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    54862 64 +   591668 AGGACGCTGTACCGGTTGGAGTCATAGTCTCCTTAAAAACTTACGCATCTTTTTACCTTGT--aag
i caeJap4.Scaffold17934 I 16 I 433

a score=-3956.000000
s ce10.chrX              4674876 25 + 17718866 AGATCAA----------TGTATCCATAACTCATAT
s cb4.chrX              10015520 16 + 21540570 TATTTC-------------------AAACCAATAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1599782 25 -  4500979 ttttcta----------ttttctagaagctaatgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325790 18 +   386604 tttttc-----------tctt------actAATAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2932739 29 +  4147112 tttttcagtccaataattttt------gctcatat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    54926 433 +   591668 I

a score=300426.000000
s ce10.chrX              4674901 566 + 17718866  
s cb4.chrX              10015536 559 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1599807 563 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    325808 557 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2932768 589 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    55359 559 +   591668  
i caeJap4.Scaffold17934 I 433 I 25

a score=-4790.000000
s ce10.chrX              4675467 31 + 17718866 CACTAGTCCTCCCCCATCTTGA--------ATTCTCGCT
s cb4.chrX              10016095 26 + 21540570 GGCAcaattccccattttttta----------tCTT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1600370 29 -  4500979 GGCAACATTCCGCATTTTCAAT----------TCTTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    326365 33 +   386604 CTCCCCTCAGTTCCTTTCTTAC------ATATTCTCACT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2933357 39 +  4147112 GCCCTCACTCCtacttttttcctctcctAAATTCTCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    55918 25 +   591668 I

a score=294710.000000
s ce10.chrX              4675498 501 + 17718866  
s cb4.chrX              10016121 525 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1600399 529 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    326398 514 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2933396 521 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    55943 528 +   591668  
i caeJap4.Scaffold17934 I 25 C 0

a score=1422.000000
s ce10.chrX              4675999 2 + 17718866 AG
s cb4.chrX              10016646 2 + 21540570 ag
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig0   1600928 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    326912 2 +   386604 Gg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2933917 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    56471 0 +   591668 C

a score=546.000000
s ce10.chrX              4676001 1 + 17718866 T
s caeRem4.Crem_Contig0   1600930 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    326914 1 +   386604 t
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2933919 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17934    56471 0 +   591668 C
e cb4.chrX              10016648 41 + 21540570 I

a score=584.000000
s ce10.chrX              4676002 3 + 17718866 TTA
s caeRem4.Crem_Contig0   1600931 3 -  4500979 TCA
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold622    326915 3 +   386604 tca
i caeSp111.Scaffold622  C 0 I 32
e caePb3.Scfld02_0       2933920 34 +  4147112 I
e caeJap4.Scaffold17934    56471 0 +   591668 C
e cb4.chrX              10016648 41 + 21540570 I

a score=0.000000
s ce10.chrX              4676005 426 + 17718866 TTGGATAGTAGAAAAAAGTAAAAAATTGTAGTCTCGAATAATTTTTCACAGGGTATTTTTAAACTTACAATACAAATTGTTGTGAAGTCGTTTTTCAGGAACAGACTAGTGTGCAACTATTAGAAAAACTGGAAAAGTTACAATTGTCTAGTTTTTTTGATAACATAAGTGGCTGAATTATGTTTAAATTGCTTTGCGAAGTGTACGATTTTTTTTTATTTTTCGGTATATTAAGTCAGTATAccgcagttatcagaatttagaggtgcaatatttttgaagtcggacaattttgcatttataaaaatgtttcctgtcaatcccgggtgccgcatttttttttgcaaaatttgcaacttttcgcgactggttaaGAAACTAGCGACTTTAATTTCAACTAAACTTTATTTATTAAATTTTAGAATC
e caePb3.Scfld02_0       2933920  34 +  4147112 I
e caeJap4.Scaffold17934    56471   0 +   591668 C
e cb4.chrX              10016648  41 + 21540570 I
e caeSp111.Scaffold622    326918  32 +   386604 I
e caeRem4.Crem_Contig0   1600934  32 -  4500979 I

a score=-403.000000
s ce10.chrX              4676431 44 + 17718866 TAGTAAA------TAGTTTTTTCAGTATAAATTTACTTACTCTCAAACAA
s caeJap4.Scaffold17934    56471 46 +   591668 cAGTATAATttttcacttctttttttatatATCT-TTTACAGTTAAT---
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2933920 34 +  4147112 I
e cb4.chrX              10016648 41 + 21540570 I
e caeSp111.Scaffold622    326918 32 +   386604 I
e caeRem4.Crem_Contig0   1600934 32 -  4500979 I

a score=273.000000
s ce10.chrX              4676475 1 + 17718866 T
s caeRem4.Crem_Contig0   1600966 1 -  4500979 T
i caeRem4.Crem_Contig0  I 32 I 1
s caeJap4.Scaffold17934    56517 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2933920 34 +  4147112 I
e cb4.chrX              10016648 41 + 21540570 I
e caeSp111.Scaffold622    326918 32 +   386604 I

a score=-454.000000
s ce10.chrX              4676476 3 + 17718866 -TCT
s caeRem4.Crem_Contig0   1600968 2 -  4500979 -TT-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    326950 2 +   386604 -TC-
i caeSp111.Scaffold622  I 32 C 0
s caePb3.Scfld02_0       2933954 2 +  4147112 -TC-
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17934    56518 3 +   591668 TTC-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10016648 41 + 21540570 I

a score=122906.000000
s ce10.chrX              4676479 240 + 17718866 AGGCTACTCGATGCTCTTTAAATCGGGTTAAATACGTTCCTCCGGTGCTCAATAATGTATTTTCTGCTGGTTTGGCATCAGTTGCAATGGCCTTCTATCCCACTGTCAGTATTGCTATGTATTGTCTCTGGAAAGCAATTGAGGTATGATATTTTGCTCCTCG-TTT---AAAT----------TTCCTAGCTGCAAACAGCGTAAGCTTCTAAAAA-----TAAAG--------CTCTGAAACAA-AGAAGATGTGAATTTTGATGA
s cb4.chrX              10016689 218 + 21540570 AGGTCTCCCGCTGCTCCTTGAACCGACTACCAGAAACTCCTCCCATGTTAAACAATATATTCTCTGCTGGATTGGCATCCATAGCAATGGCTTTCTACCCAACCGTCAGTATTGCCATGTATTGTCTTTGGAAGGCCATAGAGGTAGGCttt------------ttttAGAACT----------------------AGGTGTGca------tagaaa-----caaaaataaacacTTTCGAGACAATGGGAAGTGTGAATTCT-----
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig0   1600970 260 -  4500979 AGGTTTCACGGTGTTTACTAAACCGAGTGAAAGGAGTTCCACCAATTGTGAATAACATGTTTTCCGCTGGTCTTTCTTCTATTGCTATGGCATTCTATCCAACCGTCAGTATCGCAATGTATTGTCTCTGGAAGGCTATTGAGGTGTGTTTCTTAAAGATcctattttggaatttttttgttctttcgtAG--TGCAAATGCGTA-----GTagaaagaaaccaaaaataaacTCTTTCTCGACAA-AAGAAGTGTGAATTCTGATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    326952 244 +   386604 AGGCTTCCCGATGTTCTCTAAACCGGGTGGAAGGAATCTCTCCAGTGATAAACAACGTATTCTCTGCTGGTCTTGCATCAGTTGCAATGGTTTTCTACCCAACCGTCAGTATTGCTATGTATTGTCTTTGGAAAGCTATAGAGGTGTGTTTattaaagatttt-ttctagaaca----------ttcgtag--aaaaaaagcgtaa----gcagaaa-----caaaaataaacattttcgaaacac-AAAA-GTGTGAATTTTTATGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2933956 234 +  4147112 AGGCTTCCCGGTGCTCTCTAAATCGAGTGAAAGGAGTTCCTCCAGTTGTTAACAATGTATTTTCTGCTGGACTTGCATCAGTTGCAATGGCCTTCTACCCAACCGTCAGTATTGCTATGTATTGTCTTTGGAAGGCTATTGAGGTGTGTTTCTTAAAGattct-ttt---------------------tag--aaaaaatgcgtaa----ctaaaaa-----ctaaaataaacactagtgaaacaa-aaGATGTGTGAATTTAGATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    56521 207 +   591668 AGGCATCTCAATGTTCACTTAACAGAGTGAAACAAATTCCTCCTACCGTAAGCAGCGTATTTTCCGCTGGCCTGGCTTCTGTTGCAATGGCTTTTTACCCTAGCGTCAGTATTGCAATGTATTGCCTTTGGAAGGGTATTGAGgtattttact-----atttt-ttt---tctt----------ttcatag-------------------TCGGCGA-----CAAAA----------------CAC-AAGT-TTGTACATTTTGAAGA
i caeJap4.Scaffold17934 C 0 I 67

a score=11221.000000
s ce10.chrX              4676719  98 + 17718866 G-CTGCTCGACCGGGGTGGAATCCCAAATGTGAAAG-----GCGGG-CTTCCATGGTGATA-------TCCTGACGACAGCGAGGTGATCAGCGCCAACTCCCTTCATGACA-
s cb4.chrX              10016907  96 + 21540570 -TCTGTTCCGCAGAggtggaatttt---taaaagtgcCGAGGCGGGAAAGTCATGGAAACAAA-----CCTTGGCTAAACTA---TGATCTGCATCAAAAATAATCTC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1601230 101 -  4500979 GTTTGTTCCGCAGAGgtggaattttgaatgaaagcG----GGCGGG-AATCCATAGCAACAG-------TTCAGCGACATTGTTCTGATCAGCGTCAAGAATTATTCCGAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    327196  91 +   386604 GTTGGTTCCGCAGAGGTGGAATGCGAAATGAAAGCG----GGCGGG-AAACCATGGAGATGGAAAATATTCCGACTGCCGCCTACTGATcagttcc-----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2934190  93 +  4147112 GTTTGTTCCGCAGAGGTGGAATTTTAAAATACAGCG---AGGCGGG-AAACCATGGAAATG-------TGTTAGCTACAGTGGTTTGATCAATACCAAAAAGCT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    56728  67 +   591668 I

a score=192623.000000
s ce10.chrX              4676817 394 + 17718866  
s cb4.chrX              10017003 388 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1601331 441 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    327287 384 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2934283 391 +  4147112  
i caePb3.Scfld02_0      C 0 I 102
s caeJap4.Scaffold17934    56795 533 +   591668  
i caeJap4.Scaffold17934 I 67 C 0

a score=-17098.000000
s ce10.chrX              4677211 66 + 17718866 -----------------------aaaaataaatttaatttt-taatttGAATTTTCCGATTCAGA-----------TTTTAGA--ATTTAATTTTCTTTTGTT
s cb4.chrX              10017392 26 + 21540570 ----------------------------------CCACTGA-TTCAATAAATTT------------------------------------------GTCTTCT
i cb4.chrX              I 1 I 4
s caeRem4.Crem_Contig0   1601774 47 -  4500979 -----------------------AAGGATGTGTTTTATAGA-Cacatcagattttcagatcc--------------------------------tctttttct
i caeRem4.Crem_Contig0  I 2 I 36
s caeSp111.Scaffold622    327671 32 +   386604 ------------------------------ACCTTCACAGGTCacattctgttt-----------------------------------------catttgct
i caeSp111.Scaffold622  C 0 I 2
s caeJap4.Scaffold17934    57328 97 +   591668 ATAAAGAAGGGAACGAGAGTGTcaagaaaatatttt------gaaatttgatcctctgttttagattaccactcttttttagattattttattttcttttatt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2934674 102 +  4147112 I

a score=-6900.000000
s ce10.chrX              4677277 45 + 17718866 CACTATCTG----AAAATGTGAAAAAAATAAACAAAGTGAT--------------------TTTGCGAG
s cb4.chrX              10017422 27 + 21540570 CCCTAC-------AAAGTCGGAAG-----ACAAGAGTTT------------------------------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold622    327705 26 +   386604 -------------gaaatcagaaa-----aatcaaacttgT--------------------TTT-----
i caeSp111.Scaffold622  I 2 C 0
s caeJap4.Scaffold17934    57425 60 +   591668 ttccaagagaaaaaaaacatgaaa-----gaaAATAGTTATAAACCGAAAATAAGCAGAACTTTG----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2934674 102 +  4147112 I
e caeRem4.Crem_Contig0   1601821 36 -  4500979 I

a score=627448.000000
s ce10.chrX              4677322 1065 + 17718866  
s cb4.chrX              10017449 1075 + 21540570  
i cb4.chrX              C 0 I 487
s caeRem4.Crem_Contig0   1601857 1054 -  4500979  
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold622    327731 1036 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2934776 1081 +  4147112  
i caePb3.Scfld02_0      I 102 C 0
s caeJap4.Scaffold17934    57485 1052 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-5980.000000
s ce10.chrX              4678387 33 + 17718866 GTGTGTGTGTGTGTGTGAGGAAA--CTGAGAAAAA
s caeRem4.Crem_Contig0   1602911 31 -  4500979 --ggCTATG-GTGCCCCGGGAGAG-ACGAGAAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    328767 19 +   386604 -cG--------------ACGAGCa-cgcagaaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2935857 32 +  4147112 -CGGCTTTG-G-GCGCAACGAGAAGctaagaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    58537 28 +   591668 ---tttttg---gtggggtGGGGG-TAGAGAAAAA
i caeJap4.Scaffold17934 C 0 I 1731
e cb4.chrX              10018524 487 + 21540570 I

a score=2505.000000
s ce10.chrX              4678420 19 + 17718866 CG-CAAGCA----AAAAA-GTCATC
s caeRem4.Crem_Contig0   1602942 24 -  4500979 GG-AAAGAATAAGGGAAATGTCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    328786 23 +   386604 ga-aaagaacaagaaaaa-gtcatt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2935889 24 +  4147112 gagaaagaatgagaagaa-gtcCTC
i caePb3.Scfld02_0      C 0 I 1555
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I

a score=-698.000000
s ce10.chrX              4678439 43 + 17718866 TTGAAAATAGCATTAAATTTCGGAAAGGAAGGAAAAGCTAGTT---
s caeRem4.Crem_Contig0   1602966 36 -  4500979 TCGAAAGTGAA----------GTCCAGTGAGAGATAGGAGGGTCaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    328809 43 +   386604 ttggagatgaaaaagggaactggagagcaggaaaaaagaagtt---
i caeSp111.Scaffold622  C 0 I 114
e caePb3.Scfld02_0       2935913 1555 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I

a score=813.000000
s ce10.chrX              4678482 50 + 17718866 TTGCTTTTTTTAATAATGGAAAAAGTACTACAAAATGTGTACAATATTTT
s caeRem4.Crem_Contig0   1603002 31 -  4500979 -------------------aaaaagtaccaaaaacaggggccaatacttt
i caeRem4.Crem_Contig0  C 0 I 155
e caePb3.Scfld02_0       2935913 1555 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I
e caeSp111.Scaffold622    328852 114 +   386604 I

a score=0.000000
s ce10.chrX              4678532 732 + 17718866  
e caePb3.Scfld02_0       2935913 1555 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I
e caeSp111.Scaffold622    328852 114 +   386604 I
e caeRem4.Crem_Contig0   1603033 155 -  4500979 I

a score=820.000000
s ce10.chrX              4679264 33 + 17718866 AATGGAAAGTTTGAAAAATGACCCGTATTTATA
s caeSp111.Scaffold622    328966 24 +   386604 aacggaaattttgaaacatgagCC---------
i caeSp111.Scaffold622  I 114 C 0
e caePb3.Scfld02_0       2935913 1555 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I
e caeRem4.Crem_Contig0   1603033 155 -  4500979 I

a score=2143.000000
s ce10.chrX              4679297 17 + 17718866 TATTCGTGTGTCCTTGT
s caeSp111.Scaffold622    328990 15 +   386604 --TTCCCGTTTCCTTAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2937468 17 +  4147112 TATTTATGTTTCATTGT
i caePb3.Scfld02_0      I 1555 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I
e caeRem4.Crem_Contig0   1603033 155 -  4500979 I

a score=-3491.000000
s ce10.chrX              4679314 37 + 17718866 TTGACATGAAACCTT---------CTTATCGTTT-TTCAATCT---CCCC------------------
s caeRem4.Crem_Contig0   1603188 37 -  4500979 -------------------------------TTGATTTGATCTATACCTCTCTTCTTTCGCACTTCTG
i caeRem4.Crem_Contig0  I 155 C 0
s caeSp111.Scaffold622    329005 45 +   386604 ATGTCAGGGTTTCTT-------TTGTTATCTTTTGTATAATCTATAACCCTC----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2937485 52 +  4147112 CAGTCAGGAGATTTTCGTGAGGTCCTTATCTTATATATGATCTATACCCCTC----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10018524 487 + 21540570 I

a score=65714.000000
s ce10.chrX              4679351 563 + 17718866  
s cb4.chrX              10019011 616 + 21540570  
i cb4.chrX              I 487 I 30
s caeRem4.Crem_Contig0   1603225 602 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    329050 592 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2937537 609 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I

a score=3588.000000
s ce10.chrX              4679914 32 + 17718866 CTTTCCAACTTTGG-GGAACTAGT-------AAGCCACAA
s caeRem4.Crem_Contig0   1603827 36 -  4500979 ttttttgattttaaggAAACGGGTTACTGC----TGACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    329642 38 +   386604 tttctcatcttcaa--aaacgAGTTACTGCCAAGTGACAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2938146 38 +  4147112 tttttctgcttTCA--AAACGGGTTACAGCCAAAATACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e cb4.chrX              10019627 30 + 21540570 I

a score=-1495.000000
s ce10.chrX              4679946 183 + 17718866 TGGTTTCATAGAACTTGA-TGAATAGTCA--GAGGGAACAATGA-----AACCTACAATGAATCGA----ACATC-----AAATGAAACTTGATATGAATAAATGATAAGATCACTAGTGGAAC-----------------------GGAAACTGGAATTAAAGCCTAGACC---AACT-TACATCATCTTTTTTCA--TTTTT-CAGTCTGAGCA---------CAATGTTATTCCTT
s cb4.chrX              10019657 203 + 21540570 TCATTTATCAAAGTTTGA-AGGAGA------GAAAGGACAATG------GCCCCCTCAAGAATCAGTTTCATATTGTGACAAGT-----------TGAGAGAAAAGCGATG---AGACTGGAACCTAGACTTTTCTTG---TTCCTCCAAAACATCA-----TGTCCAGACAGAGAAGAACAAGCTCTATGTTTTCAT-GTTTCAACAAGAGAACACAAATAATTCAATGATATTGCTT
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   1603863 228 -  4500979 TGGTTCATAAAAGTTAGA-AGAAGAGGGAATGAGAATACAATACAGCATAGCCTTCCAAGAATCAA----ACATCGATGCAAATGACAGTTGATATGAAAAGATGGTAATGTCAAATGTGGAACCAGGATGTTTAATAAATTGCAACCAAAACATGA-GTATTGTTCTGAAACCtaatg--aaattttgtttttcca--gtttc-acaaCAGAACACTAATTATGCAATATTATTGCTT
i caeRem4.Crem_Contig0  C 0 I 328
s caeSp111.Scaffold622    329680 191 +   386604 TGGTTCATATAAGTTTGATATGAGTGACAATGTAAGGACAATGCCACATCACTTTTCAAGTATCGA----ACATCATTCAA------TTGTGATATGAATACCAGATAATGTTACAAGTGGAACGAGAA------------------GGAAACAAAA-CTTGAGTGGAGACTGAGAAAT-CATTC--------GACATCATGTC-CAGACAGAGCA---------CAATGGAATTGTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2938184 175 +  4147112 TGGTTCATAAAAG---------------------GAGACAATGCAGCATAACCTTCCAAGAATCGA----ACATCATCGAAACT-TGATATAATATGAATAGATGATTAAGTTACAAGTGGAACG----------------------GGAAACTGGA-----AGTTAAGATCGTCAAAT-CAACCCACATACTCACATCATGTC-CAGACAGAGCA---------caatgaaattttgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I

a score=-1958.000000
s ce10.chrX              4680129 25 + 17718866 T-TTCAAAAATTGCA---------------ACAAGAGA---CCA
s cb4.chrX              10019860 38 + 21540570 TTTTCAGAGAGATCAGTCATCATCAGAAATAAAAGTTA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    329871 23 +   386604 --TTTCGAAGGTTC----------------ACAAGAGAACA---
i caeSp111.Scaffold622  C 0 I 307
s caePb3.Scfld02_0       2938359 21 +  4147112 --tttcgaagtttca---------------acAAGAGA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=-11939.000000
s ce10.chrX              4680154 222 + 17718866 GACAAA------------ACACTTATTGAACCTA--AGGAAATGATTGAAATTTTTTTTC---------GGGACTGGAAACAACTAAAATTTATGAAAACAAAGAGCATCTTGGATGCTAGTTATTTTGAGATGCTAG-------------------TTATTTTGAAAATTCTAGGTTTCATTCCAAAAAAGATAATCTCATTTTCTGTTAAATTTAAAAGCTTAGATTTTTACATGTATTTCA-------ATGGCGAGCT----------------TTAAAATAAA
s cb4.chrX              10019898 267 + 21540570 GGAAGAGAACATATGTCTGCAT-TATAAATTTCGGTAGGAGTTGAGTcaagttttgttttgttggagttggaaattgaaacaacaacagtttgaaaaatgacgaatcaT----GATCTTTGATA----GGAATGCAAAAATGGTAGTCTTCTGCTGCTTAATTT--TAATATTAGGTCGCTCACGAAAGTAACTTATTTAGGTTTCAATaaacatt---ttccgaaa------aacgaGTTTTGTTTTACTCTGAAGTGTTTAATAGAAGAGCTGATTTGGCATAAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2938380 133 +  4147112 ------------------ACAC-TAATAAGACCA-------------TAACTTTAGTTCT----------------------------------ACAATGATCAGTCATCAAGGAACTATGAAA----GAGTTGCGCA----------------------------TAgtaaaag---------aagagaagttgagTCAG--------------------CCGGAATGTTTGAGTGAATTTTG-------CTGAAG--------------------GTGGAATAAA
i caePb3.Scfld02_0      C 0 I 111
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=-1496.000000
s ce10.chrX              4680376 119 + 17718866 TTCTCCTAAAAAAA---------------------------AAAAAAAAGTTGGATC--CGAATTTGGCA-AAACAGACTGATAA--------------------------------TCATCATAAATTGAACAACACTTGGACCGAATGTGAGCTGCAAAAAAAGTTTGGA--------------GCAATT-------TTG
s cb4.chrX              10020165 196 + 21540570 -----CTGACGAAATTGATCTCGGTTGTTTACGcggtattcaaaaaaaaatttgattgacAAAGTTACCGGAAACAGTCTAATAAAAGGTCACAATATTCTTGAACTTCTAGTTCAATTATCCTGATTTCGGTAAGAGTTA-ACAAAATttggccaactgataaaatttttaccataatatctccagaaattgagataatcg
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2938513 111 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=-10152.000000
s ce10.chrX              4680495 143 + 17718866 TGCTCA----------------------CTTTAAGCTTCAGTTTTGGCAGTCTGGGATAGTTTTTCCAA----GTTTTTCCCAAGCTGTACCATCTTCTGAC-TC-----TAAGAAGTG-----AT--ACCAGTCTGAATATCAGA-----------------------GTTCGATTTTTTACTGGACTAGAAAAGTGGTCTATG-------------
s cb4.chrX              10020361 203 + 21540570 agctcaaagtgtaagtATAGGTCCCGTTCTTTCAgcgt--gtttacggtatttgaaatCAT-----CAAAAGCGTTttgtatcagttg-accactaaTTGAAATCTTCTACAAGAAATGCGACAATTGATAAAGTTGACACTTAGAGAACCCtttttttCACGGACTTTGCAAAatcttttgttg-----aaaaatt--tttgcaaaagtgttcgaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2938624 123 +  4147112 TACTCA-----------------------------------CTTAGGATATgtg-----------------tcatttttcatcaacc--aTCACT--TTGATAAC-----CAAGAAGTT-----ATTAACCGTGTT--CACTGAAA---------TCCACATGATTTTTGCTAGCATTTTTACTC-----GAAACTGGATTTACA-------------
i caePb3.Scfld02_0      I 111 I 181
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=-1121.000000
s ce10.chrX              4680638 189 + 17718866 --TTGTGTTGTTGCCTTGATCAGACTTACAG---------TTTTGTCCACA-------------------------------------CATCAAGAATTAGTGAGGGAAGAA----ATATAGGAGTTCAACTGTGATAAAAATCTTATGAAAACCGTTTTTTAAAAC----AACGCTGCACAAAAATCCTTCAAAAAAACAAAGTCATTGTATTCAAA----CTTATGAAACACGGTTTTTGGGTTTCT
s cb4.chrX              10020564 236 + 21540570 acttttgttgtgagcaaaatttaaatttcagatgagccatttttagccagaaatgtcatttttctatatattttcagGACCATAAATGCGTCAGAACCTAGACAAAAAACAAGGTCATAAATTGgattaatttcgaaaaaaat----tgaaaaatatggtttcaaaatttgagcccGGTGGGTGAGCCTACTAAAAGGACCAATTCATT---TTCTAATGCACTTGT-AAACATC-TTTCTGG----CT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2938747 181 +  4147112 I
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=-789.000000
s ce10.chrX              4680827 17 + 17718866 CCAAAATGTGCAGCTCG
s cb4.chrX              10020800 17 + 21540570 CCGCATTTTTTATCTCC
i cb4.chrX              C 0 I 27
s caePb3.Scfld02_0       2938928 14 +  4147112 ccaaatCGTAAAAA---
i caePb3.Scfld02_0      I 181 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I
e caeRem4.Crem_Contig0   1604091 328 -  4500979 I

a score=753.000000
s ce10.chrX              4680844 2 + 17718866 AC
s cb4.chrX              10020844 2 + 21540570 at
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1604419 2 -  4500979 AC
i caeRem4.Crem_Contig0  I 328 C 0
s caePb3.Scfld02_0       2938942 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I
e caeSp111.Scaffold622    329894 307 +   386604 I

a score=36170.000000
s ce10.chrX              4680846  97 + 17718866 CCA-----------GGCCCACTCACATCATC-----TGGTGTGTTTTATCGG-CCGATAGGTCTTTTGAAATGACGTG------GAGATCCCGAAAACATTTGTTTTATTTC-----CCTCAATG
s cb4.chrX              10020846 101 + 21540570 -cataaaaaaaaacag---acccACATCATCAACCCGGGTTTGTTTTATGTGCCCCATAGGTCCTCCCAAATGACGTGTTAAGAGAGATATCCATAc--------------------caaaaatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1604421 101 -  4500979 -CA-----------GG---ACCCACATCATCAACTGGTTTATGTTTTATCGGCCCCATAGGTCTTGTTGAATGACGTGTAGTGTGAGATCCCgaaacttttccttttt---------ctaaaaTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    330201 110 +   386604 CCA-----------GG---ACCCACATCATCAACT-GGGTTTGTTTTATCGGCCCCATAGGTCTTGTTGAATGACGTGTTGGGTGGGATACCAgaacttttctttccttttctctctctaaaACG
i caeSp111.Scaffold622  I 307 C 0
s caePb3.Scfld02_0       2938944 109 +  4147112 -CA-----------GG---ACCCACATCATCAACT-GGTTTTGTTTTATCGGCCCCATAGGTCTTTTCGGATGACGTGTTGGGTGAGATACCAGAacttttcgtcttttttccgGAAGACAAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    58565 1731 +   591668 I

a score=16994.000000
s ce10.chrX              4680943 123 + 17718866 AGTAAAGAA--CAAAGTGAAAGACTTCATCTGC-----ATGAGGAT-AAAATGGGATCAAAG--AAAAGTA-------------TCG----------AAATAAGAAAATGTAGAAAAGTA-----AA---AAGATGAATAAATAAATGG-----------GGGTGAAAATTCAAA--------
s cb4.chrX              10020947 151 + 21540570 agtaaaaag--cAC-----AAGACTTCATTCATTTGAGTAATGGGTAAAAGTGGGATTAAAAGGGGAACCAGAACACAGTGTATTGGGTTGATggtaaaatggaaaaaattgaagaaggaTGAAGAAT--GAAATGAATAAATAG---------------AGGGGTGAGttagaa--------
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   1604522 138 -  4500979 AGTAAAGAG--CACATCGAATGACTTCATTTAC-----AGATGGAT-GAAGTAGGATTAAAA--GGAAACAGAACACATACTAatgg----------aaac---aaaaagtgaagaaata-----aAT--GAGATGAATAAATAGTGAAAG-------ATAGGAGGAAGTGCATA--------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    330311 139 +   386604 AATAAAGAGCACACATCGTAAGACTTCATTTGT-----AAATGGAT-AAAGTGAGATT-AAA--GGACACAGAACATGGTcgttttg----------gaatg--aaaaa-tgaaaaagtg-----agaggataatgaataaatagaaaaaa---------gtgggttGAAACAGT--------
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0       2939053 146 +  4147112 AATAAAGAG--CACATCGAAagacttcattttc-----agttggat-AAAGTGGGATTAAAA--GGAAACAGAACACAGactttttg----------gaatg--aaaaagtgaaatagtA-----AGA--AAGATGAATAAATAGGGTAAATGTTTCATTGGGGGCAAAGACAAA--------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934    60296 119 +   591668 AGTAGAAAA--CGGAAGTCAAG----------------GAATGggt-aaaat--gaataaat--aaaaa---------------ttt----------taat---acaGATCAAAGTAGGA-----AGT--GAAAGAAACAAGTATTcagaaggg------gggggggggtttaaaCAACTGAG
i caeJap4.Scaffold17934 I 1731 C 0

a score=-5796.000000
s ce10.chrX              4681066 37 + 17718866 ----TGAACACACAATGCACAGTTTTGA-----AGTGAAAGTTTTC
s caeRem4.Crem_Contig0   1604661 42 -  4500979 ----GGATAAGACAATGTATGGTTCTGTTGAGGAATGAAAATCTTG
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold622    330456 21 +   386604 ----gaaagaaggaa------------------aatcaAA---TTG
i caeSp111.Scaffold622  I 6 I 22
s caePb3.Scfld02_0       2939205 28 +  4147112 ----GGAAAATGTAACG-----------agatgaatgaaa---atg
i caePb3.Scfld02_0      I 6 I 20
s caeJap4.Scaffold17934    60415 41 +   591668 TGAATTATATCAGAATGCACGACAGTTT-----GGTCACAACTTTG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10021098 42 + 21540570 I

a score=387816.000000
s ce10.chrX              4681103 450 + 17718866  
s cb4.chrX              10021140 451 + 21540570  
i cb4.chrX              I 42 C 0
s caeRem4.Crem_Contig0   1604709 453 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold622    330499 450 +   386604  
i caeSp111.Scaffold622  I 22 C 0
s caePb3.Scfld02_0       2939253 449 +  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold17934    60456 472 +   591668  
i caeJap4.Scaffold17934 C 0 I 227

a score=6452.000000
s ce10.chrX              4681553 150 + 17718866 GCGA----GAATTTGTCAGGTCCTGTCAAAAACGCTACTCAACGAGCCAAACTCAAGAGGCCGCAGAGAAGAGAAAACAGTGCTACAGAGGACATGATAAATGTCTATAGTACAACTTTTCCATTCTTCAATGTTTTGGCCAATTTTGATGTTG
s cb4.chrX              10021591  70 + 21540570 TTGGATGTAGTTTTGAGGGGTCTCAT-----------CTCAGAGAGCAA-------------ACACA--------------------------ATGATAAATGGTAGTAGTATAACT--------TTG--------------------------
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1605162  79 -  4500979 CTAGA---GAATCTGACTGGTCCTG------------CTCAAAGAGCAC-------------GCACAGAA---------------------ATATGATAAATGGTTGTAGTACAACTGGGCTTACTTG--------------------------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    330949  76 +   386604 TTCC----GAATCTGACATATCATG------------CTCAAAGAGCAA-------------GCACAGAA---------------------ATATGATAAATGGGTGTAGTACCACCATGCTACTC----------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2939702  67 +  4147112 TTAA----GGATCTGACAGATCGTG------------CTCAAAGAGCAA-------------GCACAGAA---------------------ATATGATAAATAGCAGTAGTACAAC---------C----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    60928 227 +   591668 I

a score=-17262.000000
s ce10.chrX              4681703 119 + 17718866 CTATTCTTAGAAGATCTCGAGTATGCTATAT-TTTTAAAATGTATAATAAAAATGTTTGCTGAACGTTTATAGAAAGTCACTTAAAGCCACCAGAGACATTTAAAAATGTTTATGAAGGT--------------------------------------
s caeRem4.Crem_Contig0   1605243  58 -  4500979 TTAAGCCCGGAA----TCAAGTGATGtccttatttttaaaaacaa------------------------------------------------------------------------gacA--------TCGAAACTAGGAT----------------
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    331025  34 +   386604 ---------AAG----TCAAGTGCTCTGTGT-TACTCAAAAATA-------------------------------------------------------------------------GGCA-------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2939769 138 +  4147112 ---------GAG----TCGAGTGTTTCGAGTaggttcaaaaataaactaaaaataaaaatggatc--TGAGAGGcatttgtgttttgaaatatgaaacactggaaaatttt-----gggcaAATGACCGTCAGAgctttgttcaaaaacatcagagct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    60928 227 +   591668 I
e cb4.chrX              10021661   5 + 21540570 I

a score=-45742.000000
s ce10.chrX              4681822 191 + 17718866 TGGGCCAAGTGTAGCTCAATTTTTTGATAACGCGATATAA------TTTTTTAAGTGAAAATAGAAAAATTTCTACGTCTTTTTGAATACTATCAACAAAAATCAACAGTGAACTTGTTAGATGTTGACCAAAATAGCTTTTGTTGAAATTGTACTGATATATTTTGAATGGGGTAAACTTGTTAACTTTTCTAGCG
s cb4.chrX              10021666  81 + 21540570 TGGGTCAAGTGATGCTTCA---------------AAACAA------TCTTCTGGGTCAAAATCGGG----------------------------------------------------------TTTTTCGAGATGACATatcccaaaacttt------------tttactg-------------------------
i cb4.chrX              I 5 I 11
s caeRem4.Crem_Contig0   1605301  84 -  4500979 -cggacagaaaaaaacaaa---------------aaacaaggaatttcTCAAAGATCGG---CGGA----------------------------------------------------------CTACTGTAGTTGTCTCAATCTATAATTGGAA----------TAAACT--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    331059  52 +   386604 ----------------CAA---------------GAACTATCTTGATGTCATGA---GAAAGGGGA-----------------------------------------------------------------------------TGTCAAGTC----------------ACTGAGGAACC------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2939907 140 +  4147112 -----------ttgttcaa---------------aaac--tcttgTTCTCTTGAGTTGAGAGGAAAA-----CTATTGCACTACAGTAGTTTCTAGCacaagttcgaaaaaaat------gaacacatgggagttttcttctttggaaagttg--------------aacagaaaaaac----ggaattatCCATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    60928 227 +   591668 I

a score=-8251.000000
s ce10.chrX              4682013 30 + 17718866 TAATATCGTTGTTTTAAACTTATGCTCATT---------
s caeRem4.Crem_Contig0   1605385  6 -  4500979 -TCGATG--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    331111 16 +   386604 ----ATGGTTTTTGT------------ATCTG-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2940047 30 +  4147112 --AAACAGCTTTCGTGA-------TGAATCTACCGAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    60928 227 +   591668 I
e cb4.chrX              10021747 11 + 21540570 I

a score=15775.000000
s ce10.chrX              4682043 229 + 17718866 TGAAAATGTTGGATAACTATCAATTTTGGATAAAATTATGACCAGCACTTCCCGTAATATTTGTTCTCCAATTCTAGGAATGGGCAATTAGGCAAAGGTAT--ATAAATCTGGTGAACTTTTCCAAA--ACTTGATTAATAG-AATCATTAGTCATGCGTGATCTTATAATTCCCCCCTGTTCACTGTTCCCTTCC-CAATT-----TCCCTCATTTCTCTCCCCTGGATC-CACCTGTTG
s cb4.chrX              10021758 151 + 21540570 TGAAAAGG----------------------AAAActta-------------------------ttgaaaattccta-----aagtAATTATAAAATGGCCTAGATACATATATACTACCC----------TTTGATTGATAGAAACCATAAGTCATGCGTGATCTCTTAA-TTCA----------------CTTCC-TTCTT-----TCCTATCCCcttctaattc--a---aaaaagtca
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1605391 128 -  4500979 ------------------------------------------------------------------------------------TAATTATAAATTGAAC---ATAAATCTAGTGAACtcttccgatttttttgattaatag-AACCATTAGTCATGCGTGATCTCTTAATTTCC----------------TTTCC-CTCTT-----TCCCCATTCGTCTTCACCC--ATC-AAAACGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    331127 158 +   386604 ---------------------------------------------------------------TTCAATAACCTTC-----GCCTAATTATGAAATGGA----ATAAATTAAGTGAACTCTTCAGAC--TTTTGATTAATAG-AACCATTTGTCATGCATGATCTTTTaatttcctccttttccct-----cttccgtagttttcaatttctttcccTCCCTCCCC--ATC-AAAACGTCG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2940077 193 +  4147112 TGAAAGTGTTCCTTCTCTCGCGACT---AATAAATTCa------------------atgt---tccaaaaacttca-----aagtaattataaaaagaa----ataaattaaGTGAACTCTTCAGAC-TTTTTGATTAATCG-AACCATTAGTCATGCGTGATcttttaatttccttttccctcct-----tttcc-tggtt-----ttttctacttcctttccCC--ATCTAAAACGTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    60928 227 +   591668 I

a score=332499.000000
s ce10.chrX              4682272 748 + 17718866  
s cb4.chrX              10021909 841 + 21540570  
i cb4.chrX              C 0 I 480
s caeRem4.Crem_Contig0   1605519 816 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    331285 759 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2940270 813 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    61155 800 +   591668  
i caeJap4.Scaffold17934 I 227 C 0

a score=4337.000000
s ce10.chrX              4683020 6 + 17718866 CAAACA
s caeRem4.Crem_Contig0   1606339 6 -  4500979 aaaaca
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    332044 6 +   386604 taaaca
i caeSp111.Scaffold622  C 0 I 131
s caePb3.Scfld02_0       2941083 6 +  4147112 TAaaca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    61955 6 +   591668 TAAACa
i caeJap4.Scaffold17934 C 0 I 175
e cb4.chrX              10022750 480 + 21540570 I

a score=331.000000
s ce10.chrX              4683026 10 + 17718866 TTCAATTATA
s caeRem4.Crem_Contig0   1606345  7 -  4500979 ---aattgta
i caeRem4.Crem_Contig0  C 0 I 171
s caePb3.Scfld02_0       2941089  8 +  4147112 --caataaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    61961 175 +   591668 I
e cb4.chrX              10022750 480 + 21540570 I
e caeSp111.Scaffold622    332050 131 +   386604 I

a score=182.000000
s ce10.chrX              4683036 2 + 17718866 AA
s caePb3.Scfld02_0       2941097 2 +  4147112 aa
i caePb3.Scfld02_0      C 0 I 151
e caeJap4.Scaffold17934    61961 175 +   591668 I
e cb4.chrX              10022750 480 + 21540570 I
e caeSp111.Scaffold622    332050 131 +   386604 I
e caeRem4.Crem_Contig0   1606352 171 -  4500979 I

a score=0.000000
s ce10.chrX              4683038 959 + 17718866  
e caePb3.Scfld02_0       2941099 151 +  4147112 I
e caeJap4.Scaffold17934    61961 175 +   591668 I
e cb4.chrX              10022750 480 + 21540570 I
e caeSp111.Scaffold622    332050 131 +   386604 I
e caeRem4.Crem_Contig0   1606352 171 -  4500979 I

a score=151.000000
s ce10.chrX              4683997 3 + 17718866 TGA
s caeSp111.Scaffold622    332181 3 +   386604 TAA
i caeSp111.Scaffold622  I 131 C 0
e caePb3.Scfld02_0       2941099 151 +  4147112 I
e caeJap4.Scaffold17934    61961 175 +   591668 I
e cb4.chrX              10022750 480 + 21540570 I
e caeRem4.Crem_Contig0   1606352 171 -  4500979 I

a score=-137.000000
s ce10.chrX              4684000 1 + 17718866 T
s caeSp111.Scaffold622    332184 1 +   386604 g
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941250 1 +  4147112 t
i caePb3.Scfld02_0      I 151 C 0
e caeJap4.Scaffold17934    61961 175 +   591668 I
e cb4.chrX              10022750 480 + 21540570 I
e caeRem4.Crem_Contig0   1606352 171 -  4500979 I

a score=2687.000000
s ce10.chrX              4684001 11 + 17718866 CGGAGTGAGAA
s cb4.chrX              10023230 11 + 21540570 cgaaatacaaa
i cb4.chrX              I 480 C 0
s caeSp111.Scaffold622    332185 11 +   386604 cagaatcaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941251 11 +  4147112 tggaatcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    61961 175 +   591668 I
e caeRem4.Crem_Contig0   1606352 171 -  4500979 I

a score=36476.000000
s ce10.chrX              4684012  86 + 17718866 AAA-AGTGACG--ACAT--AGTTCTAAACTTCTAGAAACGC-GTCAGGAT-----------ACCAAATAATAACTGGTC-GAG-------------GAGAAGAAGCAGAAAG-TCGTC
s cb4.chrX              10023241 111 + 21540570 aaa-agtaacG--ACATGCAGTTCTAAACTTCTAGACACTCTGTCAGGATTCTCCCCTCCTTCCAAATAATAACTGGTC-GGGGAACTGTGATGATGAAAAGAAGCAG-CAGAATG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1606523  80 -  4500979 AGA-AGTGACG--ACAT--AGTTCTAAACTTCTAGACA----GTCAGGAT------CCCCCTCCAAATAATAACTGGTC-GTG------------------AAAgcag-aag-acg--
i caeRem4.Crem_Contig0  I 171 C 0
s caeSp111.Scaffold622    332196  83 +   386604 agataGTGACG--ACAT--AGTTCTAAACTTCTAGACA----GTCAGGAT-----TCCTCTTCTAAATAATAACTGGTCGGCG------------------AAAgcag-aag-acg--
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941262  84 +  4147112 aga-aatgacgACACAT--AGTTCTAAACTTCTAGACA----GTCAGGAT-----CCCCCTCTCAAATAATAACTGGTC-GTG------------------AAAGCAGAAag-gcg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    61961 175 +   591668 I

a score=140696.000000
s ce10.chrX              4684098 199 + 17718866 GTCGTCGAAAAAAGAAGAGGGCACTGCATTTACATATGACGAC-----------T------------------TCTACAGTATGCTGCGCTGTTATGGGTGTGGCCGAGATG----------------------------------ACACTGCTGGGA---CATACT--------------------------------------------GTGAATGATGAGA--AGACAGCTGCGG------ACAGGTGAATGAGTTGTGAAGAAAAACGGTTATGAAATGA----------------------GTGCATT--GGGTCGGCGGTTTG-TCAAATGAGTCA
s cb4.chrX              10023352 240 + 21540570 -----GAAAATGGGAAGAGGGCACTGCATTTACATATGACGACGAAGTGGTGTCT------------------TCTACAGTATGCTGCGCTTTTATGGGTGTGGCCGAGATGTATAcgtaaaaaaaagaagaagaagtagaagaagaagacagtgGGA---CATACT--------------------------------------------GTGAATGATGGGAGAAGACAGCTGCTGGGACGCGCAGGTGAGTGAGTTATCGG-----GAGGTTATGAAATGA----------------------GTCGGTTCAAAGT----GGTTTG-TCAAATGACTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1606603 194 -  4500979 -----aagaaaaagaagagggcaCTGCATTTACATATGACGAT------GTCTTC------------------TCTACAGTATGCTGCGCTTTTATGGGTGTGGCCGAGATG---------------------------------------ACTGGGA---CGTACT--------------------------------------------GTGAATGATGAGA-CAGACAGCTGCGG------GCAGGTGAGTGAGTTGTGAG---AAAAGGTTATGAAATGA----------------------GTGCATTGGGGGTCGACGGTTTG-TCAAAtgactca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    332279 202 +   386604 -----aagaaaaagaagagggcACTGCATTTACATATGACGAT------GTCTTTCCC------CCCTTtatttctacagtattctgCGCTTTTATGGGTGTGGCCGAGATG---------------------------------------ACTGGGA---CACACT--------------------------------------------GTGAATGATGAGA--AGACAGCTGCGG------GCAGGTGAGTTgtcagaaaa----aagggttaTGAAATGA----------------------GTTCATC--GGGTCGGCGGTTTG-TCAAATGACTCa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941346 209 +  4147112 -----aagaaaaagaagagggcaCTGCATTTACATATGAAGAT------GTCTTCCCCCAGTCTCTCTTTATTTCTACAGTATGCTGCGCTTTTATGGGTGTGGCCGAGATG---------------------------------------ACTGGGA---CACATA--------------------------------------------GTGAATGATGAGA--AGACAGCTGCGG------GCAGGTGAGTGAGTTGTGAA----AGGGGTTATGAAATGA----------------------GTTCATC--GGGTCGACGGTTTGTTCAAAtgactca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    62136 261 +   591668 GTCG-TGAAAAGGGAAGAGGGCACTGCATTTACATATGAAGCT------GTC---------------------TCTACAGTATGCTGCGTTTTTATGGGTGTGGCCGAGATG---------------------------------------AGTGGGAAGGCATTTTCTGTGtgaatgaaggaatgaatgaatgaatgaatgaatgaatgaatgagtGACGAGA--AGACAGCTGCGG------GCAGGTGAACACTTTCGGGG---AAAAGATtatgaaatgaaaataaaggAATGAGTGAGTAGGTGAGTG--AGTTAGTTGGTTTG-TGAAATGACTCA
i caeJap4.Scaffold17934 I 175 I 45

a score=-9744.000000
s ce10.chrX              4684297 16 + 17718866 CTTTTTTTTTTGGCGA------------------------------
s cb4.chrX              10023592 16 + 21540570 --CTTCTTGC--------Cct--cgatt------------------
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0   1606797 23 -  4500979 --cttttttct-gagaaGCCT--CGCCC------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    332481 42 +   386604 --tacaatttttgagaagtcT--CGCCCCGTTTTTCCATACTACAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941555 42 +  4147112 cttttctttttgaaaaagtctcaCACCCCGATTTTTAAC----TGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62397 45 +   591668 I

a score=-2858.000000
s ce10.chrX              4684313  9 + 17718866 ---------------------GATTTGC----GA------
s caeRem4.Crem_Contig0   1606821 36 -  4500979 GATTTCTTGTCCATCATACTGGAGTTCA----GATACTGA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    332523  9 +   386604 ---------------------GAGTTAC----GA------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941597 13 +  4147112 ---------------------GAGTTGCATAGGT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62397 45 +   591668 I
e cb4.chrX              10023608 32 + 21540570 I

a score=7593.000000
s ce10.chrX              4684322 27 + 17718866 TGGAGGTGGG-----AC------GAAATGG----AGAAGGAG
s cb4.chrX              10023640 36 + 21540570 TGGGAATGGGTCACAAC------Ggaagcgagaaaaaaagag
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   1606857 27 -  4500979 TGGAGGTGGG-----AC------GGAAGCG----AAAAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    332532 30 +   386604 TGGAAGTGGG-----GC------GGTTAGGGGG-AGAAAGAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941610 36 +  4147112 TGAGGGTGGG-----ACAACGGAagcaacgaga-aaaaagag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62397 45 +   591668 I

a score=114751.000000
s ce10.chrX              4684349 302 + 17718866 GCGCTGT---------ATGAGGTGAGAAACTGTTGAG-GC---------TTCTCT---CTTCTTTCACAATAATGTTCTA--CTTCACTGTTG---------CGCCTAG--TTTTCTCGAACGTTGCAAGCTGATGAGAAACATTAAGACGTATATTTGGGGGGG--GGGGGTGGAGTGGGGAGGCGAATAGGTCTTTAGGTTTGTCGGCATGCAACGAACGGCGGTGGGATAT-------GATGAATCAGA----------------------AAG-------AGGGTGACG------------TTACTTAGTGAATCATATATTGGAATGTAAGTTAGC----------CCACCCTGTAGGAA----GCAGGTGT-------TACTTT--CTTT--TCGCAATC--CT----------AGTT
s cb4.chrX              10023676 339 + 21540570 gcgCGGTTTCTATAGGAGGAGGTGAGAAATAGTAGCAGGCTTCAcc---ttttctttatttcttcGACAATAGTGTTCTACTCTTCACTTTCAC--------CGCCTGGTTTTTTCTCGAACGTTGCAAGCTGATGAGAGGA------------ATTAGTAAGAG--AGGaggagaaaaggga---aaaaggg--------TTCGACGGC---------------TTGGGATATAG----AGATGAATCAC------------------------AT-AAGTGATGAGTGACATCAGTCAGTTCCTCTCCTAGTGAATCATAGATTGGAATTTAAGTTAGCTAGCAGCAGACCACCCTTAAGAATTTATGCAGCTGTTGTTG--CATTCc--tgtatttcgaaattt-tcgaaactgtgaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1606884 314 -  4500979 GCGCGGT---------AGGAGGTGAGAAATAGTAGTA-GCTtcacc---ttttct---tttctttcacaaTAGTGTTCTA--CTTCACTTTCAC--------CGCCTAG--TTTTCTCGAACGTTGCAAGCTGATGAGAGAC------------ATTAG-AAGGG--GGGTTGAGGACGAGGG---GAATAGG--------TTTGGCGGCATGACAAGAACGATAGTGGGATAT-------GATGAATCACTAT---------GTGGTTAAGTGAATAAAGTGATGAGTGACATCAG--------TTCCTTAGTGAATCATAGATTGGAATTTGAGTTAGC----------CCGCCCTGTACGGATAATGCAGCTGT-------CTATCC--TGTA--TCGGCATTC-CT----------ATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    332562 316 +   386604 GCGCGGT---------AGGAGGTGAGAAACAGTA----GCttcacctttttttct---tttcattcacaatagtgttctt--cttcactttcac--------CGCCTGG--TTTTCTCGAACGTTGCAAGCTGATGAGAGGC------------ATTTGAGGGGGGAGGGGAAGGAATGAGGG---GAATAGGT-------TTTGGCGGCATGTAACGAACGATTGTGGGATAT-------GATGAATCACAGT------TAGTTGGTTAAGTGAAT-------AGAGTGACATCAGT-------CCTCTTAGTGAATCATAGATTGGAATTTGAGTTAGC----------CCACCCTGTAAGAAAGAAGCAGCTGC-------CGATCC--TGTA--TCCACATTCCCT----------ATTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941646 288 +  4147112 gcgCGGT---------AGGAGGTGAGAAATAGTA----GCTTcacc---ttctct---tttctatGACAATAATGTTCTA--CTTCACTTTCAC--------CGCCTAG--TTTTCTCGAACGTTGCAAGCTGATGAGAGGC------------ATCTGTGGagg--aggaaaggaaaaaagg------------------tttgGCGGCATGTAACGAACGATCGTGGGATAT-------GATGAATCACAGT--------------------ATT-------TGAGTGACATCAGT-------TCTCTTAGTGAATCATAGATTGGAATTTGAGTTAGC----------CCACCCGGTAAGAAAGATGCAGCTGT-------CAATCCAAGGAA--TTCCTAT---CT----------GTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    62442 288 +   591668 GCGCAAT---------GGGAGGTGAGAAGTAACAGTG-G------------------------------GTAGTGTTCTA--CTACACTTTCTCCCATCTCTCGATTAG--CAGTCTCGAACGTTGCAAGCTGAGAGAATGC--------------------GGA--ATGGAGTGAACGAGGT---TTGGGCG--------GCGGGCGGTGGGTAATAAACTACCATG---TATAGAAGTAGATGAATAAAAGAAGTGACTAAGAGGATGGATGAAA-------TGAATGACATCAG--------TCTTTT-GTGACTCATAGATTGGAATTTGAGTTAGC----------CCTA--------------GCAGATGGTCCTGACCAGACC--GATT--TCAAAAAT--GT----------AGTT
i caeJap4.Scaffold17934 I 45 I 67

a score=-2260.000000
s ce10.chrX              4684651 20 + 17718866 TAAATTTGAAT----TCACATTTC
s cb4.chrX              10024015 14 + 21540570 caaattcaaat-ttc---------
i cb4.chrX              C 0 I 175
s caeRem4.Crem_Contig0   1607198 11 -  4500979 TTActtcaaac-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    332878 11 +   386604 TTACCTCACac-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2941934 12 +  4147112 TTACTTCAAACA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62730 67 +   591668 I

a score=2026.000000
s ce10.chrX              4684671 18 + 17718866 GATTTCAAACAAGACCAT---
s caeRem4.Crem_Contig0   1607209 20 -  4500979 -atttgaaacacgATGACGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    332889 17 +   386604 -atttgaaacagaacGAT---
i caeSp111.Scaffold622  C 0 I 43
s caePb3.Scfld02_0       2941946 12 +  4147112 GATTTGAAACAT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62730 67 +   591668 I
e cb4.chrX              10024029 175 + 21540570 I

a score=1721.000000
s ce10.chrX              4684689 14 + 17718866 TAGCACTCTCATTT
s caeRem4.Crem_Contig0   1607229 14 -  4500979 TAACGATCTAATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2941958 14 +  4147112 AAACGATCTAATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62730 67 +   591668 I
e cb4.chrX              10024029 175 + 21540570 I
e caeSp111.Scaffold622    332906 43 +   386604 I

a score=-1936.000000
s ce10.chrX              4684703 23 + 17718866 GCAAAGTA-TAACAC------CTGAAAACT
s caeRem4.Crem_Contig0   1607243 30 -  4500979 ACGGGTTAGCGACAAAACGAATGGGGAGCT
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       2941972 30 +  4147112 ACGGGTTAGCGACGCGACAGATTGGGAGCT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934    62797 21 +   591668 --------acaaaacgaaaaaccaaaact-
i caeJap4.Scaffold17934 I 67 C 0
e cb4.chrX              10024029 175 + 21540570 I
e caeSp111.Scaffold622    332906 43 +   386604 I

a score=7076.000000
s ce10.chrX              4684726 110 + 17718866 CATTT------AGAGAAAGT-ATGAAACGCGTGCGGATAATTACTATATCC---------------AGATTG--------TAGTAGCTGGGT---TGA--TTGAGAGTTCAATTCATCAAACTGT----TCGTTTCGA----------------------------------AAACTTTCGCT
s caeRem4.Crem_Contig0   1607278 160 -  4500979 CATTT------GGAGAAAGTTTCAAATCACATGCGGATAATTA-AGGCTTCGA------TACCCG-AGGTGGATGA------ATGAATGGGT---TGATGTTTCAAGTAGAATTCATCAAACTGTATTCTAGATTCCAGTGTTCAATACTTTATGAACTTTAATTCATTCATAAACTTTCGCT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold622    332949 165 +   386604 CATTCAGAGGGagagaaagttttgaaacagatttGGATAATTACAGTATTCGGGGGAATGACGTGAAGGTGGCTAA----TAGCATCTAGGTATGTGATGTCTAGAGTTAAATTCATCAAACTGTATACTGGATTCAAGTGTTCGATTCTTT--------------ACTAATAAACTTTCGCT
i caeSp111.Scaffold622  I 43 C 0
s caePb3.Scfld02_0       2942008 127 +  4147112 CATTT------GGAGAAAGT-----------TTCGGATAATTACAGTATTCGACGG---GACGGGAAGGTGGCTAATAGCTAGCACCTAGGTTTGTGATGTC------TGAATTCATCAAACTGTATACTGGATTCAAGT------------------------------ATATACTTTCGCT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934    62818 103 +   591668 caTTT------AGAGAAAGT-TTGAAT---GCGTGGATAATTATATGCTTT--------CGTATTAGCGTGGTGAA----------CGAGGAATGAGGTATT-------------ACGAAACAGTG---TCGgtgc------------------------------------aaacttttttt
i caeJap4.Scaffold17934 C 0 I 72
e cb4.chrX              10024029 175 + 21540570 I

a score=4900.000000
s ce10.chrX              4684836  92 + 17718866 AA------GTGTGTTA-CAATGACGAAT------------TTATGAAGCTATGTGTC--ATCTCCTTC-ATCCAAGTAATTCAGTAAT----AGCTGTTTGTTCTCGTTATTTCAATT
s caeRem4.Crem_Contig0   1607438 108 -  4500979 GAACGATGATGTGTTACAAATGACGTCTTGAAAAGTGG--TTGTGATGTGAtgtgtcatttttctttt-attccgAGAGTTCATCCTT-----ACTATTTGTTTATTGTGTTCT--TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    333114  80 +   386604 GAATAATGATGTGTTACTTATGACGTTTTGTGA-------TTTTGATgt----------gtttctcttcattccGGGAG------------------TTTGTTTATTTTACATT---T
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2942135 114 +  4147112 GAATGATGATGTTTCA-TTATGACGTCTTTGGAAGATGTTTTATGATGTGATGTGTTG-GTTTCTCTT-ATTCCGGGAGTTCATCGTTCTTCcattatttgtttattttgtttt-ggc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    62921  72 +   591668 I
e cb4.chrX              10024029 175 + 21540570 I

a score=134187.000000
s ce10.chrX              4684928 412 + 17718866  
s caeRem4.Crem_Contig0   1607546 376 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    333194 399 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2942249 376 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    62993 488 +   591668  
i caeJap4.Scaffold17934 I 72 I 1664
e cb4.chrX              10024029 175 + 21540570 I

a score=51593.000000
s ce10.chrX              4685340 142 + 17718866 GGTTAGAATTAGGTGAAAACG--AATGCATTGTGTGTTAGGTTATCCACTAATTGTTCTAGTCTTGGAAGTAAA-----------GTGTACAGTTGTTATATTTTTGGAAGAAGCTGTAAAAAATCAAGGAGAAA---GAAGCTGAGGGGTCAAGCTG
s caeRem4.Crem_Contig0   1607922 135 -  4500979 GGTTAGAATAAGGTGAAAACGAAAATGCATTGTGTGTTAAGTTATCCACTAATTGTTCTAGTCTTGGAAGTAAA-----AGTATAGTGTACAGTTgctatatttttgaagaagc----AGAAGG--------------GGAGGTTGGAGGTCAAGCTG
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold622    333593 142 +   386604 GGTTAGAATTAGGTGAAAACG--AATGCATTGTGTGTTAAGTTATCCACTAATTGTTCTAGTCTTGGAAGTAAAGTGGCAGTATAGTGTACAGttgttatatttttgaaagaag----aaaaag-------ggaa---agaggTAAGGGGTCAAGCTG
i caeSp111.Scaffold622  C 0 I 7
s caePb3.Scfld02_0       2942625 142 +  4147112 GGTTAGGAATAGGTGAAAACG--AATGCATTGTGTGTTAAGTTATCCACTAATTGTTCTAGTCTTGGAAGTAAAGTGGCAGTATAGtgtaca---gtaatatttttgaagacaa----aaaaag-------gaaaagcagAGGTTAGGGGTCAAGCTG
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e cb4.chrX              10024029 175 + 21540570 I

a score=261040.000000
s ce10.chrX              4685482  935 + 17718866  
s cb4.chrX              10024204 1023 + 21540570  
i cb4.chrX              I 175 C 0
s caeRem4.Crem_Contig0   1608065 1045 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold622    333742 1005 +   386604  
i caeSp111.Scaffold622  I 7 I 215
s caePb3.Scfld02_0       2942776 1024 +  4147112  
i caePb3.Scfld02_0      I 9 I 20
e caeJap4.Scaffold17934    63481 1664 +   591668 I

a score=-2459.000000
s ce10.chrX              4686417 27 + 17718866 -------------GCGT--TACGGCTACAGTAATTGATGATA
s cb4.chrX              10025227 32 + 21540570 ----------GATGCTGGCGACAACTTTAGCGATTTACGACG
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   1609110 30 -  4500979 ----------GATTCGG--AACGACTTTGGCGATTAGCGACA
i caeRem4.Crem_Contig0  C 0 I 221
s caePb3.Scfld02_0       2943820 33 +  4147112 GTTTTATGAGGCTACAG--AAAAAGT---GTGATCTAC----
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e caeSp111.Scaffold622    334747 215 +   386604 I

a score=-3109.000000
s ce10.chrX              4686444 111 + 17718866 -GCATAACCGTAGCTTTCACAC----TTT--------TACAAAGAGATTGATAAGGATGAACATATTTTAACTA-----TAAGGTTAATAAATATGCAAAATTAGTATATA--TTTCAAAAATCAAAATGT--
s cb4.chrX              10025276 118 + 21540570 GAATGAACCGTAGTGTTGACACTATGCTGACAGAAAATACGAGGTGATGACAA-------TCACAAACTACGTA-----AAATATTAAGAGAGAGGC-AAGCAAGTACAGTTTTTGcaatattaaaaatat--
i cb4.chrX              I 17 I 1597
s caePb3.Scfld02_0       2943853  95 +  4147112 -GGAGAACTGTGAATTTGACAC----CTG-------ATATGAGG-AATGACAAAGAATGCATACAAACTACATACTCTGAAATTGTAAAa-----------------------cctcaaca--aaaaatagct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e caeSp111.Scaffold622    334747 215 +   386604 I
e caeRem4.Crem_Contig0   1609140 221 -  4500979 I

a score=-2397.000000
s ce10.chrX              4686555 479 + 17718866 GCACA-TTTTATATTTCATAATGGCTTCCGGAGCTTCAATCAAAAATAAGTTTTCACAATAACAAAACACTTGCGTCATTCAAAACTTGCACGAATTTTTGAAAGTTTATTACAAATATTGGATCTAAGAGTCAGATACACTGCTTTAATTTGAGTCATGACTGAGCCAAGTCCTGCTAGTTAAGGCTTGGACCTGAGTCTGGACGTGATTTTCAAATTTCTAGCGAGCTTTTCATCATTTCTCACTGATTATCGGCAAGGTTGAAAAACTTACCGTGAAGTTTAATATCAAGTATTGAGGAGTTGTACTATGTATGTCAACACAAAAATCGCTCTTTTGAACGAACAGAGCAATCTCGTTCTAATACCAATTTC-----AGATATTCTACCCCTTAATAGGAATTGGTGGCATGTTGTAAAACTTGAGATGTACAATTT-----TTCATATGACATATTCTGCT------CGGTGCTTTTTGCGTTTTACACATT
s caePb3.Scfld02_0       2943948 357 +  4147112 GGAGACTTTTATAGTTCA------------AAGATTCTAACAGAAAGAATGT---------ATAGAACAATT-------TGAAGGTCTGATGAAAACTTCGACAGTGTGGTATGAATTTC---TCAAGGAATC---------------------GTTGGAAATGAAC--AGTTTCGTGAGATAA----------------TGGAGATTTTTTGCAGGACTCTGG--------------------------TACCG----------AAAACGTACAGACGATTTTCGCAGAAA--ATGGAGAGTTTGTCTGTTGAATAGTTGCGCAAAAAGAGCCTTTAGGATGGATTACA----------TCTA----cgatttcttggaaaatgtCTT------------GAAGTATTATCATGGTGctga-tttgaagttttgaacttgGAACTTCAT----TATATTTTGCTTAGAAACGCTGAAGTTCCCGTTTGACAAATT
i caePb3.Scfld02_0      C 0 I 134
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e cb4.chrX              10025394 1597 + 21540570 I
e caeSp111.Scaffold622    334747 215 +   386604 I
e caeRem4.Crem_Contig0   1609140 221 -  4500979 I

a score=0.000000
s ce10.chrX              4687034 132 + 17718866 GTTTTCTGTGTAGACTGTATTGCTAGAGAGAAGGGAAGAGTTCAGTCTACCAAGAGACCATCAAAAAAACGAACTTTGTAAAAAAACAATTGTACTTCCTCGATAACAACGTAATAGACGtataattatatt
e caePb3.Scfld02_0       2944305 134 +  4147112 I
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e cb4.chrX              10025394 1597 + 21540570 I
e caeSp111.Scaffold622    334747 215 +   386604 I
e caeRem4.Crem_Contig0   1609140 221 -  4500979 I

a score=-1250.000000
s ce10.chrX              4687166 149 + 17718866 aaaaaatttaCAGT-------ATTTCTCTAGATTTCAGATTTTTAGTTAATTGCACAACTGCCTGGCAAATT--TATCCTTTAAAAATT-TTGGATTAAAAAAGTCAAATTCAATCAAGATCAAAAAAGGATGTTAGGTTTAATTT--------CTGTATCTGAAT----T
s caePb3.Scfld02_0       2944439 153 +  4147112 aaaaagtttgaaatcgaATGGACCAATTTAGACGGCAAACTCATG---------AAAACTGt------aattcttaattttcagaaatcatctGATTATAA--GCCATAATCAAACTA-ATTATCAAcgtttatcatttttcttctaacCACGCTTGTGACGGCATATACT
i caePb3.Scfld02_0      I 134 C 0
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e cb4.chrX              10025394 1597 + 21540570 I
e caeSp111.Scaffold622    334747 215 +   386604 I
e caeRem4.Crem_Contig0   1609140 221 -  4500979 I

a score=326.000000
s ce10.chrX              4687315 8 + 17718866 ATTTTCAA
s caeSp111.Scaffold622    334962 8 +   386604 ATATCcga
i caeSp111.Scaffold622  I 215 C 0
s caePb3.Scfld02_0       2944592 8 +  4147112 ATAATCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    63481 1664 +   591668 I
e cb4.chrX              10025394 1597 + 21540570 I
e caeRem4.Crem_Contig0   1609140 221 -  4500979 I

a score=7503.000000
s ce10.chrX              4687323 31 + 17718866 ACACTTTC--AATTTCATATTCTTGGATTAGT---------------A
s cb4.chrX              10026991 48 + 21540570 ACACTTTCCGTTTTTCGGATTCTTGAATTAATCTCATCTGTTAACTAA
i cb4.chrX              I 1597 C 0
s caeRem4.Crem_Contig0   1609361 30 -  4500979 ACACtttc--gttttcagattcttggATAAAT----------------
i caeRem4.Crem_Contig0  I 221 C 0
s caeSp111.Scaffold622    334970 31 +   386604 aaactttca-attttcggattCTGGAACATGT----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2944600 30 +  4147112 ACACtttcc-atttcc-aattctTGGATTAAT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    63481 1664 +   591668 I

a score=153216.000000
s ce10.chrX              4687354 333 + 17718866 AGT--GACTCATTTGATAGGAAACGCACGGAG-------AAGGAATTAGTAGAATAATAATCAAT---AAATAGATTGAACCAGTT-TTGAACGTG--TTGTCAGACGACCGAACAGTTTAGCATGTT----AGTTATTTATCAGAAAGTATTTGGAGATATTACATATCTGC------ATCTGCAA-------ACGAA-ACATTAATATATGAATTTAGAGTGAGGCGAGG----CGAGGGAAGACAAAATTATGTCATCATATCTAATCTCC----------------------------------TTCAGATTTCGGAATTGTTCCCGA-AATTGGGGAGTATATTGAAACCGGCTTCGCATAATTATTGGGGTTGCATAAGTCAAAATCAATTATAAATTG
s cb4.chrX              10027039 320 + 21540570 ACTAAGACTCATCAGACAACTAAATAAGGACG-------GCAGAATAAGCTAATAGCAACGTAGT---AAACATATTGAACCAGTT------------TTGTCATGCGAATGTTCAGATTTGCATGTCATTTAGCTATTTATCAGAAAGAATTTGG-------ACAAAACTGCAATAATACATCCAGCTGCAAAACGATTCTATTGATAG--GAATGGGAAATC------------------GGGGAAAAATTATGTCATCATATCTAATCTGC----------------------------------TTGGGATTTCGGAATTGTTCCCGACAAG--AAAGATATTTCAAAACCGGCTTCACATCATTATTGGGGTTGCGTAAGTCAAAATCAATTATGAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1609391 321 -  4500979 -----GACTTATTTGGTAGCTAAATGAGAACG-------GCAAAAGAAGCAGATTATTAAGAAGT---AAATAGATTGGACCAGTTTGTGAACATACGTTGTCACACGACCGTTCAGATTTGCATGTC----AGTTATTTATC-GAAGGAATTTGG-------ATAAATCTGCAATAATATCTGCAG-------ACGAATTCACTGACAAACGGATAGAAACAC------------TGCAAAGAGGGAAAATTATGTCATCATATCTAATCTGC----------------------------------TTCAGATTTCGGAATTGTTCCCGA-AAT--GAAGATATTTT-AAACCGGCTTTGCATAATTATTGGGGTTGCATAAGTCAAAATCAATTATGAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335001 315 +   386604 -----GACTCATTTGCAAGCTAAACAAGaagc-------aaataaaaaacagattgTTAGCGAGT---AAACAGATTGGACCAGTT-TCGAACGGG--CTGTCACACGGATGTTCAGTTTTACATGTT----AGTTCATTATC-AGAAGAATTTGG-------ATAAATCTGCATGAATATCTGCAA-------ACGATTTGATGTA-AAAAGAATTAAAAGA--------------GGGTGAGGGGAAAATTATGTCATCATATCTAATCTTC----------------------------------TTCGGATTTCGGAATTGTTCCCGA-AAC--GGAGATATTTG-AAACCGGCTTTCAATAATTATTGGGGTTGCATAAGTCAAAATCAATTATGAATTG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2944630 312 +  4147112 -----GACTCATCTAGTGGCTAAATAAGGAAG-------GCATAAGAAGCAGATTATTAAGAAGC---AAATAGATTGGACCAGTT-TTGAACGTG--TTGTCTTACAGCAGTTCACATTTGCATGTT----AGTTAGTTATC-AAAGGAATTTGG-------ATAAATCTGCAATAATATCTGCAA-------ACGATTTCATG---AGACGAATCGAATG---------------GAAAGAAGGGAAAATTATGTCATCATATCTAATCTGC----------------------------------TTCGGATTTCGGAATTGTTCCCGA-AAT--GAAGATATTTT-AAACCGGCTTTGCATAATTATTGGGGTTGCATAAGTCAAAATCAATTATGAATTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    65145 344 +   591668 AGT--GACTCATTGGaga---aaatatgtatgtatgttaACAGATTAATGAGATAACGAAGCAGTTAAAAACAGGACTACATAGTT-GAGAACGTC--ATTCCTTTC-----------TTTGCAGATT----TGATTTGCATG-------CTTTGT-------ATTACTTTGC------ATTTGTTT-------TCTAATACATAAacatataaataaataaatcagaTCAGCTGTTAAAGAAATGCAGAATTATGTCATCCTATCTAATCTGCAGCGGATTTAGATTCTGATTTAGATTTCCCttctttcaaatttcgg-aTTGTTCTCGACAAT--A-------TTG-AAACCGGATTTCAATAATTATTAAGGTTGCATAAGTCGAAAGCAATTATAATTTG
i caeJap4.Scaffold17934 I 1664 I 2623

a score=2839.000000
s ce10.chrX              4687687 50 + 17718866 ACGAATCCCTCAATCCGAAAATCGTGAGAACATTG----------ATTGATAAATTTATG
s cb4.chrX              10027359 54 + 21540570 A------TGGAAATGTCAAAATCGGTACAAAATCGGACTGAGAGATTGGAatcatttgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1609712 55 -  4500979 ACGACTCTGAGACTGTCGGAATCGATAAGATTTTG----GAAGGAATGGAAG-ATTTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    335316 57 +   386604 ACGACTCTCAGACTATCGGAATCGATAAGAttgtg-agaaaatgaa--gaagattttGGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2944942 51 +  4147112 ACGACTCTCAAACTGTCGGAATcgata---------agaaaatgaatggaagatTTTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    65489 2623 +   591668 I

a score=171487.000000
s ce10.chrX              4687737 486 + 17718866  
s cb4.chrX              10027413 521 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1609767 501 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    335373 467 +   386604  
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2944993 489 +  4147112  
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17934    68112 464 +   591668  
i caeJap4.Scaffold17934 I 2623 C 0

a score=1433.000000
s ce10.chrX              4688223 8 + 17718866 TTCAGATT
s cb4.chrX              10027936 8 + 21540570 TTTCGGTT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1610269 1 -  4500979 -------T
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    335841 8 +   386604 ttttgttt
i caeSp111.Scaffold622  I 1 C 0
s caeJap4.Scaffold17934    68576 8 +   591668 ttttaatt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2945482 33 +  4147112 I

a score=-1500.000000
s ce10.chrX              4688231  8 + 17718866 T-----TTAGATT
s cb4.chrX              10027944 13 + 21540570 TGAAGgaggaatt
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1610270 13 -  4500979 GGAGATTAAAAtt
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    335849  5 +   386604 t--------aatt
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2945482 33 +  4147112 I
e caeJap4.Scaffold17934    68584  0 +   591668 C

a score=421.000000
s ce10.chrX              4688239 5 + 17718866 TGTTA
s cb4.chrX              10027959 5 + 21540570 tgctt
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    335854 5 +   386604 tggTA
i caeSp111.Scaffold622  C 0 I 14
e caePb3.Scfld02_0       2945482 33 +  4147112 I
e caeJap4.Scaffold17934    68584 0 +   591668 C
e caeRem4.Crem_Contig0   1610283 11 -  4500979 I

a score=251.000000
s ce10.chrX              4688244 4 + 17718866 TTGA
s cb4.chrX              10027964 4 + 21540570 ttgg
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2945482 33 +  4147112 I
e caeJap4.Scaffold17934    68584 0 +   591668 C
e caeSp111.Scaffold622    335859 14 +   386604 I
e caeRem4.Crem_Contig0   1610283 11 -  4500979 I

a score=0.000000
s ce10.chrX              4688248 374 + 17718866 AACAAAGAGCAACAATACAAATAAGACTAGAATAACACCTCATCTTTTGAAAAAGTTGAAATAGAACATTACTTGATAACAGGGTATTTTCAGAACATCTATAATTTAATTTTTTCATTTAGCTAAAGCTGCAATTTTGAGGGCAATTGTCAAAACTGCTGAATGCTACAATTGTCAAAAAGTATATTTTTCAATGATTTAAGATGAATTATTGAATCTTATAGACGTAATTCGGAAAAAATGTACTGTGAACACCGGTTGTGGCTATAATTCCCGAACCCACACGTTTATTCCGTGGTACTTAGAAAAAATTGGTTTTTTTTCGAGTAATTGATCCGAGTAATTAACTTAATTTATTAAAATGTTCTACCATA
e caePb3.Scfld02_0       2945482  33 +  4147112 I
e caeJap4.Scaffold17934    68584   0 +   591668 C
e cb4.chrX              10027968   0 + 21540570 C
e caeSp111.Scaffold622    335859  14 +   386604 I
e caeRem4.Crem_Contig0   1610283  11 -  4500979 I

a score=588.000000
s ce10.chrX              4688622 16 + 17718866 TTTTCTGTAGTTTAGA
s caeJap4.Scaffold17934    68584 16 +   591668 ttatttttaattttga
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2945482 33 +  4147112 I
e cb4.chrX              10027968  0 + 21540570 C
e caeSp111.Scaffold622    335859 14 +   386604 I
e caeRem4.Crem_Contig0   1610283 11 -  4500979 I

a score=384.000000
s ce10.chrX              4688638 10 + 17718866 TATTCCCACA
s caeRem4.Crem_Contig0   1610294 10 -  4500979 tattttcatc
i caeRem4.Crem_Contig0  I 11 C 0
s caeJap4.Scaffold17934    68600 10 +   591668 taacTTTAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2945482 33 +  4147112 I
e cb4.chrX              10027968  0 + 21540570 C
e caeSp111.Scaffold622    335859 14 +   386604 I

a score=546.000000
s ce10.chrX              4688648 1 + 17718866 A
s caeRem4.Crem_Contig0   1610304 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2945515 1 +  4147112 A
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17934    68610 1 +   591668 A
i caeJap4.Scaffold17934 C 0 I 8
e cb4.chrX              10027968 0 + 21540570 C
e caeSp111.Scaffold622    335859 14 +   386604 I

a score=910.000000
s ce10.chrX              4688649 1 + 17718866 A
s cb4.chrX              10027968 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1610305 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2945516 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    68619 1 +   591668 A
i caeJap4.Scaffold17934 I 8 C 0
e caeSp111.Scaffold622    335859 14 +   386604 I

a score=345103.000000
s ce10.chrX              4688650 404 + 17718866 ACTCACTGAAATAGAAGAATGCCCATCCTAGATTTGAAGCATTATAGAATTGGCATTTTTGAGACACGCAGTCCTTTTGCCAATACATGCAATTGACATCAATGATGTATCCAAACACTATTGCTCCTGGAATACTTCCAAGAATCCTCATCCAAAGCCAACCGAAGCAAGTGAAGTGATCACGATGTTTATGATTCACAAC--------------------------------------------------TCGCAGTGAAGAACTTTGCAGGACCGGAGCTGTGATAAAAATGCAGAAGGAAAGAGCTATGAACATTATGATAAATTGGTAGATCTGTTTCTGACATGAAGCATCGCAATATCCCTTCTTCACAATAGTGTTTTTTGAGCATCCACAATTTGTCCAGTTTGATGCTCCAAACTTTATGCCCT---ATAAGGAATTATGCTACTCT-----
s cb4.chrX              10027969 396 + 21540570 ACTCACTGAAGATAAAGAAAGCCCATCCCAAATTGGACGCATTATAGTATTGACACTTTTGTGAGACACAATCTTTTTGCCAATACATACAATTGACATCAATGATGTATCCAAAAACAATTGCTCCAGGAATACTTCCGAGAATTCTCATCCACAACCATCCAAAACATGTGAAATGGTCTCGATGCTTGTGATTCACAAC--------------------------------------------------TCGAAGGGAAGAACTTTGCAAAACTGGTGCAGTGATGAAAATGCAGAAGGAGAGAGCGATGAACATGATTATGAATTGATAGATCTGTTTCTGACAGGAAGCGTCACAGTATCCCTTCTTGACAATCGTGTTCTTTGAGCATCCACAATTCGTCCAGTTTTGAGCTCCAAACTTTATGTcct-----------gaacaaaaaatt-----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1610306 399 -  4500979 aCTTACTAAAATAAAAGAACGCCCATCCCAAATTTGAAGCATTATAGTATTGGCATTTCTGCGATACACAATCTTTCTGCCAGTACATGCAATTGACATCGATGATGTATCCGAAGACAATCGCTCCAGGAATACTTCCAAGAATTCTCATCCACAACCAACCAAAGCAGGTGAAATGATCACGATGCTTGGGATTCACAAC--------------------------------------------------TCGAAGAGACGCACTTTGCAGAACTGGTGCTCCGACGAAAATGCAGAAAGAAAGACCGATAAACATAGCGATGAACTGATAGATCTGTTTTTGACATGACGCGTCGCAGTATCCTTTCTTcacaattaaatttttagaacatCCGCAGTTGGTCCAATTAGAAGCGCCGAATTTGATATCct--------aaaaaataagagaat-----
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    335873 407 +   386604 ACTCACTGAAATAGAAGAATGCCCATCCAAGATTGGAAGCATTATAGAACTGACACTTCTGTGATACACAATCTTTCTGCCAGTACATACAGTTAACATCGATGATGTATCCAAATACAATTGCACCCGGAATGCTTCCTAGTATTCTCATCCATAACCAACCAAAGCATGTGAAATGGTCTCGATGCTTATGATTAACTAC--------------------------------------------------TCGGAGAGATGAACTTTGCAGAACTGGTGCAGTTATGAAAATGCAGAATGAGAGAGCGACAAACATTGCAATGAATTGATATATCTGTTTTTGACACGAAGCATCGCAATATCCTTTTTTAACCATCGTGTTCTTTGAACAACCACACTCTGTCCAATTAGAAGCACCAAACTTGATTCCCTGGAAGTGCAGAAAATGTTAATct-----
i caeSp111.Scaffold622  I 14 I 17
s caePb3.Scfld02_0       2945517 397 +  4147112 ACTCACTGAAGTAGAAGAAAGCCCATCCCAGATTTGAAGCGTTGTAGAACTGACATTTCTGGGAGACACAATCTTTCTGCCAGTACATACAGTTAACATCAATAATGTAACCGAAAACAATTGCTCCAGGAATACTTCCAAGTATTCGCATCCAAAGCCATCCAAAACATGTGAAGTGATCACGGTGTTTATGGTTAACAAC--------------------------------------------------TCGGAGAGAAGAACTTTGAAGAACTGGAGCAGTGatgaaaatgcaaaatgaTAGAGCAATAAACATGATTATGAATTGATAAATCTGTTTTTGACAGGATGCATCGCAATATCCTTTCTTAACAATTGTGTTTTTAGAGCATCCACAGTTAGTCCAATTGGATGCACCAAATTTGATATCCT----------ACAAtcatagttt-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    68620 455 +   591668 GCTTACTAAAGAAGAAAAACGCCCATCCTAGATTAGATGCATTGTAGTATTGACACTTTTGCGAACTGCAATCTTTTTGCCAATACATGCAATTTTCATCAATTATGTAGCCAAAGACAATGGCGCCTGGAATACTTCCGAGAATTCGCATCCAAAGCCAGCCAAAGCAAGTGAAATGATCACGGTGTTTATGGTTCACAACCCTAAacgttttggtttttttttgttttttttttttgtctgcccAACTCACCGAAGGGATGAGCTTTGAAGAACCGGAGCTGTAATGAAAATACAGAAGGATAGAGCAATGAACATTCCCACAAATTGATATGTCTCTTTTTCACAAGATGCATCACAATATCCTTTTTTCACCATTCCAGTCTTCGAGCAACCACAATTGGTCCAGTTGGAAGCTCCAAACTTTGCTCCCT-------GAAACTATAACAAGTGCATAC
i caeJap4.Scaffold17934 C 0 C 0

a score=-2107.000000
s ce10.chrX              4689054 16 + 17718866 TTTTTTTAGTAAT----TGC
s cb4.chrX              10028366 12 + 21540570 ----tacaCAAGT----CAA
i cb4.chrX              I 1 I 10
s caeRem4.Crem_Contig0   1610706 12 -  4500979 ----tTTGGGAAA----CGA
i caeRem4.Crem_Contig0  I 1 I 8
s caePb3.Scfld02_0       2945914 16 +  4147112 ----ttcgaaaatatcctGA
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934    69075 16 +   591668 ATACATGAGAAAT----TGT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    336280 17 +   386604 I

a score=234495.000000
s ce10.chrX              4689070 426 + 17718866 ----AACCTACAGGCATATCTGCACAACCAGCATGGCAAGGTGAAAGGAAAGTTAATTTGCTATCTTCTGAACAGACTGGGTTGAAAAATGAATCGCAATGGCAGTTTTCACTGCAAGTTTCCAATGCACCATATCTCGGAAGGCTGAAGTTGTTTTTTTGTTCAATTCTTCATATAAAATTC-----GAATAA--------ATAA--AAT-----AAAT---CT-----TACTCAGAAGAAGGAACATTTACTCCATAAACATTCAAAGACTCGCACCGAATGAGCAAACAACTACTGCATCCAGCCGCCATTATCCCAAAAACTATCACGAAATACATAGACGGCTTGAAGCGATTTTCAAAAAGTTTGGAGATTCTTCCGCCAATGTAGCTGGCCACAATTCCAACAGGCACCACAACCCCACCTAAATTTGA----TTATACT--------AAA-----TTACTCTTTTGG---
s cb4.chrX              10028388 413 + 21540570 ----TGATTACCGGTGAATCTGCACATCCAGCATGACATGGGGAAAGGAAAGTGAGCTTGCTCTCTTCGGAGCACACTGGATTGAAGAAAGGATCACAGTGACAGTTTTCGCTGCATGTCTCTAGAGCTCCAAACTTTGGAaggctgaaa--------------------------acaaaaa-----aaattatactgaccgaaa--act-----ttaaaagct-----CACTCTGCAGAAGGAACATTCACTCCAAAAACGTTCAAGGATTCACATCGGATCAAAAGGCAGCTACTGCATCCGGCAGCCAATATTCCAAACGTCATTACAAAATACATTGATGGTTTAAAGCGATTTTCGAATACTTTAGCAATTCTTCCACCGATGTAGCTAGCGACAATACCGACTGGAACAACTACTCctcctgaaaaata-------ttttcagtgtttGAA-----TTACTCGCA------
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   1610726 416 -  4500979 ----GAGATACCGGAGAGTCGATACAGCCAGCATGGCAAGGAGAGAGGAAAGTCAGTTGACTTTCTTCAGAGCAAACAGGGTTGAAGAACGCATCACAGTGACAGTTCTCACTGCAGGTCTCAGTAGCGCCAAACTTTGGAAGCCTGGAG--------------------------AGAAcac-----atatatttttgattttaattgtt-----ttta---cT-----GACTCTTTGACTGGAACATTGACTTCGAACACATTTAAAGATTCACAACGGATCAGAAGACAGCTACTGCATCCAGCAGCGAGAAGACCAAAAGTCATCACAAAATACATTGATGGTTTAAAGCGATTCTCAAacacttttgaaattcttccaCCAATGTAACTTGCACATATTCCAACTGGAACAACCACTCctcctgaaaaataagagtttttttcagaa---aaa-----atagtatCA------
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold622    336297 410 +   386604 ----aaattactGGTAAATCTGCACATCCTGCATGACAAGGGGAGAGAAACGTGAGTTTGCTTTCTTCAGAACACACCGGATTGAAAAAGGCATCACAATGACAGTTTTCACTGCAAGTCTCCAAAGCTCCAAATTTAGGAAGCCTGCAA--------------------------AATAATCTTTCTAAATTA---ATCTAATAA--TTA-----AGAT---CT-----CACTCTGTCTGAGGTACATTGACACCAAAGACGTTCAGAGATTCACAACGAATCAACAAGCAACTACTGCATCCAGCAGCCAAAATTCCGAATGTTATCACAAAATACATAGATGGTTTGAAACGATTCTCGAAGAGTTTTGCTATTTTTCCTCCGATCCAACTAGCTGTGATTCCAACAGGTACGACTACCCCTCCT-acaatta----ttttgttt-ttg---aga-----ctGATTCTT------
i caeSp111.Scaffold622  I 17 C 0
s caePb3.Scfld02_0       2945937 414 +  4147112 ----TCGTTACCGGTGAATCTGCACATCCCGCATGGCAAGGTGACAGGAAAGTCAGTTTGCTTTCTTCTGAACACACAGGATTGAAAAATGCATCACAATGACAGTTTTCACTGCATGTCTCCAGAGCTCCAAACTTCGGAaggctgaaa--------------------------ataaatc-----aaattaTG-AAGCCGTAA--GTC-----TCAT---CTATACATACTCTGCGGATGGCACattgacttcaaaaacattcaaggACTCGCAACGAATGAGCAGACAACTACTGCATCCGGCAGCCATAATTCCAAAGCAAATTACAAAATACATGGATGGCTTGAATCGGTTCTCAAAAAGCTTCGCTATTTTTCCACCTATCCAACTTGCGCATATACCAACAGGTACCACTActcctcctgaaaaaaa----ccatgtttGCTA---AGA-----GTATTCATT------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934    69091 424 +   591668 ATCAATTTTACCGGCACATCTGCACATCCAGCATGACAGGGTGAGAGAAATGTCAACTTGGTATCTTCAGAGCAAACTGGATTGAAAAAAGAGTCACAATGGCAATTTTCATTGCATGTCTTGGAAGCTCCAAATTTGGAAAGCCTGAAA--------------------------AACAATG-----GGATTG---GGTTTGTTA--ATTGCGTGTTTT---CT-----TACTCTGCATCCATTACGTTAACACCTGATACATTGAGAGAATTGCAGCGAATCAACAAACAGCTACTGAAAATTGCCGCAAGAACACCAAAAACCACTACAAAATACATGGACGGTTTGAAgcgattttcgaattttttcgagatttttccaCCGATGAAACTGGCGCTAATGCCTACCGGCACAACTATTCCTCCTGCAAATTt----gtaaatgcaaaa---aaaaaacgttatttttt---tgg
i caeJap4.Scaffold17934 C 0 I 355

a score=-5510.000000
s ce10.chrX              4689496  9 + 17718866 ATGTACC----G-------T
s cb4.chrX              10028801 10 + 21540570 ---AATTGTCAG-------T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1611142  6 -  4500979 ---AATC----A-------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    336707 13 +   386604 ---AAAC----GATAAACTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2946351 11 +  4147112 ---GAAC----A--TGACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    69515 355 +   591668 I

a score=172886.000000
s ce10.chrX              4689505 335 + 17718866 ACCTGTTATAAGACTTGCATTTCCTGATGAGAAACCAAGAAGGGTTTCCAGCAGTTTTGGAATAAAAGTGATATATCCATTCATGAGCATGGCTTCAATTGTCTGCATCAAAATTACACACATGCAGGTTTTGTTTTTGAATAACATCTTA---ACAGTTT---------------------AATTTTTTTTTTGAAATCGGAGTAAATTC---------AACTTACAAATATAATCTTGAAAAACTCGTACTTATGATCCGAAAAGTCTTTATCCAACGAGGCGTCAGTTCTGTGAACATCGTTTGCTTTACGAACGGTAGTATCTATAAATG--------------------------------TTGAAATAACT-------------------GAA--------------------------------------------------------------AGTGTGTTTGGAAAAAGCTC
s cb4.chrX              10028811 436 + 21540570 ACCTGTGATTAAACTAGCGTTTCCTGATGAGAATCCAAGAAGAGTTTCAAGAAGTTTTGGGATGAAAGTGATGTATCCATTCATAAGCATAGCTTCAATAGTTTGCATGAGGATGACACACATGcaagttttgtttttaagAAGCATCTGG---A---------------------------AAT---TCGATTAGGGT--CACAAGTTTAGGATCAGTTGACTCACAAgaatgattttgaagaattcatATTTGTGGTCAGAAAAATCCTTGTCAAGTGAAGCATCGGTCCGGTGGACGTCGTTAGCTTTTCGAAGACcggtgtctgaaaattgggttttcagTGGGTATTGATTCGGCGATATGTCAAGATTTTCGGCTCTGGGACTTGTTCTTTATAAACATTTCGCCACAATGATAATGCAGGCAAATGAGTAGGTTTCGAactaaa----------attatattttcagagctttc
i cb4.chrX              C 0 I 179
s caeRem4.Crem_Contig0   1611148 327 -  4500979 ACCAGTAATCAAGCTAGCATTTCCTGCAGAGAATCCTAGAAGAGTTTCCAGAAGTTTCGGAATGAAAGTAATATAACCATTCATCAACATTGCTTCAATAGTCTGCATGAGAATGACGCACAtgcatgttttgtttttcagaagcatCTGAGTTA---------------------------TATTTATTGAATAACGT--AATGAATGTGA--------AACTCACCAATATAATCTTGAAGAACTCGTACTTATGGTCAGAGAAATCTTTGTCCAACGAGGCATCGGTACGATGAACATCATTTGCTTTTCGCATGCCAGTGTCT---------------------------------------TCAATAGTTTT----------CTTGTTGctgat--------------------------------------------------------------------ttgtaaaaaatttc
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold622    336720 320 +   386604 ACCAGTCACTAAACTAGCACTTCCAGATGAGAATCCAAGAAGAGTTTCTAGTAGTTTTGGGATGAAAGTGATATAACCATTCATTAACATTGCTTCGATAGTTTGCATAAGTATCACACACATACacgttttatttttgagaagcaTCTGC---AACGTTTc-------------------taat---ttgaagaaagtggAACAATTTTA---------ATCATACcagaataattttgaaaaattcatatttgtGATCTGAGAAATCCTTATCTAATGACGCATCAGTTCTATGAACGTCGTTTGATTTACGCATGCCAGTATCTAAAACGA-------------------------------------------------------------------------------------------------------------------------------ATCATCATTTGAGAAGTTAA
i caeSp111.Scaffold622  C 0 I 9
s caePb3.Scfld02_0       2946362 382 +  4147112 ACCAGTCACTAAACTAGAGTTACCAGATGAGAAACCAAGAAgtgtttccaaaagttttgggaTGAAAGTGATGTAACCATTCATGAGCATAGCTTCAATAGTTTGCATGAGAATCACACACATACAAGTCTTGTTTTTGagaagcatctga---aaaataac--------------------att---tagaaaagaaaaaaaagacaatg---------aactcacgaaaataattttgaagaactcGTATTTGTGATCAGAAAAGTCTTTGTCTAATGAGGCATCAGTTCTATGAACATCGTTGGCTTTTCGCATGCCGGTATCTGAAAAGATGATAGCAAT----------------------TCAAAGCTAAC----------GGCGTTTTtgtt--------------------------------tactgatttttttaattatatgTGGCcactattgtttttttcgcaGATAA
i caePb3.Scfld02_0      C 0 I 91
s caeJap4.Scaffold17934    69870 344 +   591668 acCTGTAACAAGACTGGCACCTCCAGAAGAAAATCCGAGCAATGTTTCCAGCAACTTTGGGATGAACGTGATGTAACCATTCATCAGCATGGCTTCGATTGTCTGCATAAGGATCACAAACATGCAGGTTTTGTTTTTGAACAGCATCTGA---CATATATTAAATTGAAGATTGCAGCAATAATcaaatgaagaaaaacgcaaaaaaagaac-------aacttacaaaaataattttgaaaaattcatatttatGATCGGAGAAATCTTTATCCAATGACACATCGGTTCTGTGAATGTCATTCGCTTTGCGGGTGTTTGTATCTgta------------------------------------ttaa-------------------------------------------------------------------------------------------attgtttttttaataatttt
i caeJap4.Scaffold17934 I 355 I 16

a score=384814.000000
s ce10.chrX              4689840 730 + 17718866  
s cb4.chrX              10029426 670 + 21540570  
i cb4.chrX              I 179 I 235
s caeRem4.Crem_Contig0   1611492 678 -  4500979  
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold622    337049 676 +   386604  
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0       2946835 681 +  4147112  
i caePb3.Scfld02_0      I 91 C 0
s caeJap4.Scaffold17934    70230 853 +   591668  
i caeJap4.Scaffold17934 I 16 I 1225

a score=-2614.000000
s ce10.chrX              4690570 2 + 17718866 CA--
s caeRem4.Crem_Contig0   1612170 2 -  4500979 --TA
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold622    337725 2 +   386604 -AT-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947516 2 +  4147112 -at-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    71083 1225 +   591668 I
e cb4.chrX              10030096 235 + 21540570 I

a score=-150.000000
s ce10.chrX              4690572 1 + 17718866 G
s caeSp111.Scaffold622    337727 1 +   386604 C
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947518 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    71083 1225 +   591668 I
e cb4.chrX              10030096 235 + 21540570 I
e caeRem4.Crem_Contig0   1612172 25 -  4500979 I

a score=-6052.000000
s ce10.chrX              4690573 21 + 17718866 ---GCTGTTATAAGCTGGGACAAT------
s cb4.chrX              10030331 21 + 21540570 ---GCTGGTATGGG-TTAAACAAAT-----
i cb4.chrX              I 235 C 0
s caeSp111.Scaffold622    337728 16 +   386604 CATATT--------------CATTGATAGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947519 29 +  4147112 ggaattgaaagtag-tgagaaaaagaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    71083 1225 +   591668 I
e caeRem4.Crem_Contig0   1612172 25 -  4500979 I

a score=-297.000000
s ce10.chrX              4690594  5 + 17718866 -----------TAGAC
s cb4.chrX              10030352  5 + 21540570 -----------TATAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1612197  5 -  4500979 -----------taGAC
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold622    337744 16 +   386604 AAAATATTTGTTAGAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947548 16 +  4147112 aaaacgaaaagtaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    71083 1225 +   591668 I

a score=92968.000000
s ce10.chrX              4690599 113 + 17718866 AAACGGTACCTTTGGTTGCGTACAATGCTAGCGGAATGAGCATTACTGTTACAAAAACGTCATATGTTGCCGCGAAAATCCCACTCTGCGTAGAGGTTAGTTTGAATCTGAAA
s cb4.chrX              10030357 112 + 21540570 -AATCTCACCTTTCGTTGCGTAAAGTGCAAGTGGGATGAGCATGATTGTAACAAATACGTCATATGTTGCGGCGAAGATTCCACTTTGTGTTGAGGTAagtttgaatctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1612202 107 -  4500979 -TGTGTTACCTTTTGTCGCATAAAGTGCAAGTGGAATAAGCATAACTGTAACAAAAACATCATACGTGGCCGCGAAAATTCCACTTTGCGTCGAAGTAAGTTTGAACC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337760 107 +   386604 ------TACCTTTAGTAGCGTATAAAGCAAGTGGAATAAGCATGATTGTGACGAAGACATCATAGGTGGCAGCAAAAATTCCACTTTGCGTTGAAGTTAATTTAAATCTGAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947564 109 +  4147112 ----GTTACCTCTGGTGGCGTAAAGAGCCAGAGGAATAAGCATAATTGTAACAAACACATCATAAGTAGCAGCGAAGATTCCACTTTGCGTTGATGTTAATTTAAAGCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    72308 113 +   591668 AAATTTTACCTTTTGTAGCGTAAAGAGCCAATGGAATGAGCATAACAGTCACGAAAACATCATAAGTGGCCGCAAAAATACCACTCTGTGTTGAGGTCAGTTTGAATCTGGAA
i caeJap4.Scaffold17934 I 1225 I 44

a score=-6148.000000
s ce10.chrX              4690712 19 + 17718866 GTA------------------AGAAGTTTTTTTATAA-------------------
s cb4.chrX              10030469 32 + 21540570 atg-----tgtcaTGAAAACATGAAGTCTTGTCATAA-------------------
i cb4.chrX              C 0 I 17
s caeSp111.Scaffold622    337867  9 +   386604 ATA----------------------GTTTTg-------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947673 56 +  4147112 ATACAGGCTGTTGTTAACGAGGAGTGtcttaaaaaaatgaaaacgatgaaatttag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72421 44 +   591668 I
e caeRem4.Crem_Contig0   1612309  0 -  4500979 C

a score=-10573.000000
s ce10.chrX              4690731 90 + 17718866 CTTGGTGAAAGAAAAATGAATTCATAACGGGTTATTTTAAACTTTAGACGATTGTCTGGTTTTCTTACGTGCAAAATGTTGCCAGAAAGT
s caeRem4.Crem_Contig0   1612309  7 -  4500979 -------------------------------------TAAACTT----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337876 31 +   386604 --tttcagctgaaaa----------------------tatattttaaa------------------------agaaaat-----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947729 68 +  4147112 tttttcgaatGCAAAGT------------GGGAATTCCatatttcaaa-------cttcataTCATCTgatcaaaatatttcgaaaa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72421 44 +   591668 I
e cb4.chrX              10030501 17 + 21540570 I

a score=-10562.000000
s ce10.chrX              4690821 167 + 17718866 TTCCAAGGTTTGACAAGAGGCGG----CTAAAATCTTCCAAGCAATCGT-------------------GAT------------CAAAAAAGTTTAAATTCAGAAGGAGAATTCAA-----CTTTTCTCAGAAAAAGAACCAATTCTCGACTGACCTATTTGttttttttaaattaatttttaaaGTTCAACAAATTCAGCAGTTCTG
s caeRem4.Crem_Contig0   1612316  37 -  4500979 --------------------------------------------------------------------GTT------------CAACAGAGTCAGTagt-----------tttaa----------------------------------------------------ctaaaaaaa---------------agaa------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2947797 144 +  4147112 ---caaattctGAGAATCTTCGAAATTCCGAAGTTTTTCACACATGCATTTGTGAATAGCACATAaatgttttcttgaatttctaacaaagtttgaatt-----------ttcaaactttcatttctcagaaaa---------------------------cttgctccaaaataa---------------aaacttaat-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72421  44 +   591668 I
e cb4.chrX              10030501  17 + 21540570 I
e caeSp111.Scaffold622    337907   0 +   386604 C

a score=2910.000000
s ce10.chrX              4690988 3 + 17718866 CTC
s cb4.chrX              10030518 3 + 21540570 CTC
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   1612353 3 -  4500979 ctc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337907 3 +   386604 ctc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947941 3 +  4147112 CTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72421 44 +   591668 I

a score=153929.000000
s ce10.chrX              4690991 203 + 17718866 ACCTTTTTTCAATCGAACTGATGGAAACTGAAACCAATCCATTTACAATTGCACCTTGCAACATTGCATTCGCTGATAAAATTGACATAAACGGAATAAAATTTGAAAGCCATTGTAATCCTTTGGGTCGAAACCACGAAAACCCAAATGGTGTTTCGTCGGCTTCACCCATGCTGAAATAAATGTT------------ATTATAGGATATTTAT
s cb4.chrX              10030521 191 + 21540570 ACCTTTTCTCAATGGAACTAATCGAAACAGACACTAATCCATTGACAATTGCTCCTTGTAAAAGTGCATTACTTGATAGAATGATCATGAACGGAATGAAATTCGATAAGACTTGGAGACTTTTCGGCCGAAACCAAGAGAACCCGAACTGTGTTTCATCGGCTTCACCcatgctgaaaa-------------------atcatatttt-t----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1612356 186 -  4500979 accGTTTTTCAATAGAACTGATAGAAACGGACACTAATCCATTGACAATTGCACCTTGTAAAAGTGCATTTGCTGATAGAATCGACATGAATGGAATAAAATTAGAGAGCCATTGTAGGCTCTTCGGTCGAAACCACCAAAACCCAAACTGTGTTTCATCGGCTTCACCCATGCTGAAAA-------------------AGTATA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    337910 197 +   386604 accttttttcaatggaactGATAGAAACAGACACCAATCCGTTGACAATTGCTCCTTGTAACAGAGCATTTGCGGAAAGAATTGACATGAATGGGATAAAATTAGAAAGCCATTGGAGTCCTTTTGGCCGGAACCAAGAAAACCCGAAATGAGTTTCATCGGTTTCACCCATACTGGAAA-----TC------------GTTGAAAATt-tatat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2947944 199 +  4147112 accgtttttcaattgaactgATTGAAACCGACACCAAACCATTCACGATTGCTCCTTGTAATAATGCATTTGCAGATAATATGGACATAAATGGGATGAAATTGGATAAAAACTGAAGTCCCTTCGGTCGAAACCATGAAAACCCGAATTGTGTTTCATCGGCTTCACccatgctgaaaa-----tt----------caattatatAGT-TGTGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    72465 199 +   591668 ACCGTTTTTCAATTGAGCTGATTGAAACTGACACAAGACCATTAACTATTGCTCCTTGAAGAAGTGCATTCGCGGATAGAATTGACATGAACGGAATAAAGTTGGACAGCCATTGGAGTCCCTTTGGTCGGAACCATGAAAACCCGAACTGTGTTTCGTCTGAATCACCCAtgctgaaaa-----ttggttttagAATAGTTAT-----------
i caeJap4.Scaffold17934 I 44 I 4004

a score=2796.000000
s ce10.chrX              4691194 76 + 17718866 AAAA-ACAGTTTTCAGA-----------GAAAACAAACGTTGTAG--AAGATGCCAAGAATGTTTCAGAATAGGATTTTTCAGATATATT------------
s cb4.chrX              10030712 60 + 21540570 -tga-gcatTGATCAGC------------TTAACAAACGTATTTGGCAAGATTTCA-----------TAGAAGTTCTTATCGGAG-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1612542 98 -  4500979 -TAG-AAGATGATAAGATACACTTCAAAGTTCACAAACGTGTTAG--AAGATTCCAATAATCTATTTGAGGACATTTCACCGGAACTACTCTCTGCCACATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338107 74 +   386604 ataa-aaaatta-aaag------------agaaCAGACATTTGAG--AAGGTGACAATAAATTATCTGAGGACGATTCTCCGGAACAATT------------
i caeSp111.Scaffold622  C 0 I 62
s caePb3.Scfld02_0       2948143 76 +  4147112 AAAAGGAAATTATGAAG------------TTAACAGACGTATCAG--AAGATTCCATTAGTCTATCTGAAGACAATCCACCAGAACTATT------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=-9478.000000
s ce10.chrX              4691270 43 + 17718866 GATTTGGTTGCGTTGCATAAATGCTTTATTCAACGATTCAACC--------------------------
s cb4.chrX              10030772 37 + 21540570 ----------------------------TTCACCAGTTTCATC----CAGTTTTACCAAACAAACACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1612640 52 -  4500979 --------------AACGACACCTATGCTCTGCCACATTTAGC-CGTCAGTTCTA--AACTGAACAACG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2948219 61 +  4147112 --CTCCGCTACAGCTAAAAGACCTATGCTCTGCCACATCAGACCCGTCAAATTGG--AACTAACT----
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e caeSp111.Scaffold622    338181 62 +   386604 I

a score=14074.000000
s ce10.chrX              4691313 85 + 17718866 GTCGCCCGCACA--------------ATGTACTAGTTCTATTTTTCAGATTATGCAAATACAATGGTCTTTTTTGTGTGTTCTG---GACAAGACAGTGTTT
s cb4.chrX              10030809 65 + 21540570 --------TCTA-----CTCCCTAGTG---GCCAGTTCTCTTTTTCGGATTATGTAAATGTCTT------------------TA---AACTGGACAATGTTT
i cb4.chrX              C 0 I 151
s caeRem4.Crem_Contig0   1612692 77 -  4500979 --------CTCG-----CTCACTACAATATTCTAgttcttgttttcagattatgtAAATATGTTGGCCTT---------TTGCG---AACCAGGCATCGttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338243 79 +   386604 GCCACCCGCACA-----TTCTCTTTTACAGTCca------gttttcagattatgTAAATAAAATGGTCTT---------TTCCG---AAACTGACactgttt
i caeSp111.Scaffold622  I 62 C 0
s caePb3.Scfld02_0       2948281 93 +  4147112 GCCACCCGCACAAAACTCTCTATTTTTCCCTCTagttcttgttttcagattatgCAAATAAAGTAGtcct---------ttccgaaaaaattggcactGTTT
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=4150.000000
s ce10.chrX              4691398 17 + 17718866 GTTCTTCTAATACTTGT
s caeRem4.Crem_Contig0   1612769 16 -  4500979 gtttttctaa-acttGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338322 17 +   386604 gtttttgaatcacTTGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2948374 17 +  4147112 GTTTTCCTAGTACTTGT
i caePb3.Scfld02_0      C 0 I 43
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10030874 151 + 21540570 I

a score=-4955.000000
s ce10.chrX              4691415 101 + 17718866 ATAAGTGGACATCAAGGGTGCGCAATTTCGATATTTTCCAAAAGTTGGCAACTGTCAAAAGTTTCAAAAACAAGCAATTACCA--ATGTTGCCAAATGCCGGC
s caeRem4.Crem_Contig0   1612785  20 -  4500979 -----------------------------GAGATTTTATA----------------------------------CAATGACCA--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338339  20 +   386604 -------------------------------GATTTGTTA----------------------------------CAATGACCGTC------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2948391  43 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10030874 151 + 21540570 I

a score=-30231.000000
s ce10.chrX              4691516 424 + 17718866 GGGAAGTGTGAAGTTTTGAAATTTATCATAGATATTAGAGCGTGTATATGTTATTTGTGACAGAATTTTTATTTCCCATGTTCAAAGTGTCTAAAAAGCAATATTTTAGGTGTTTCCTTAAGAAAAAACAATACTGACAGAATTTAAAgaaatttttaaatacgagcagtgataatttccagaaatttttgcaaattcagcagttgccgaaaaattttgccgcgtttcaacatttccaaaattggcaaAACTTGGTTA------AAAAGTTGCAGAATTCTGATAAGATATGGTTGAAGTTGGTTGGAAAATGG----CTAAAGTTGGATGCAAAACGTGGCTGAGAAGTTGCAGCGAATTGCCAAGTGTACTATCAATTATTTGTCTAATGaaaagtgaaaacaaaaataagaacacaaaacaaaaaGTCTGC
s caeRem4.Crem_Contig0   1612805 176 -  4500979 ------------------------------------------TCCAGATAT-----------GAATTTT-------------------------GAGAGAGT------------------AAGAAAAACAGTACTAG------------------ACAGT--------GGGGAACTCTTAA-AA--------------------------------------------------------------ATA--T-GGATATCTCCTAAGAAGTGTAG--------------AATGACAATTCCCA-TCAAAGATGC----C-------------AAAATG-------------GCTTCGTTTTGCg-------------gttaatttttcaatagaaaaagaaaacaaaatcagaagaa------------tttGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338359 184 +   386604 ----------------------------------------------TAAGT-----------ggacattt----------ttgaatg-------gaagaaaa------------------cggaaaagccATAATGA----------------CTTTGGTTTTATGAAGTGATGAtcataa-aa--------------------------------------------------------------aaaact-ggttA-----GATGGATTGAGT--------------ACGGAAGGAACCAATTCAAAACCGC----CTAAGATT------AAAA-------------------CGTATTACC-------------GTTACATTAGCAAGCggaagagaaaactgaagCAAAA-----------------TGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2948434 184 +  4147112 --------------------------------------------------------------GGA-----------------------------AAATAAAT------------------GAGGAAAGTTATAATGGATGTGGT--------TTTATGAC--------GCGATGATTATAAGAA--------------------------------------------------------------AGAACTAGGTTA-----GAGGGATTGGAG-----------GAAACCGAAGAAACGAATTTTGAAACGCGGAACGAGGAAT--AAGGAAAA-------------------CGTATTACC-------------GTTAAATTAGCAATCGGAAGTGAAAGC-AAAGCAAAAGCA------------TTTGA
i caePb3.Scfld02_0      I 43 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10030874 151 + 21540570 I

a score=-36897.000000
s ce10.chrX              4691940 1076 + 17718866  
s cb4.chrX              10031025  781 + 21540570  
i cb4.chrX              I 151 C 0
s caeRem4.Crem_Contig0   1612981  750 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    338543  738 +   386604  
i caeSp111.Scaffold622  C 0 I 18
s caePb3.Scfld02_0       2948618 1063 +  4147112  
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=-2053.000000
s ce10.chrX              4693016 23 + 17718866 GA--------------AAAAGTGCTCAAGAGCATGCT
s cb4.chrX              10031806  7 + 21540570 ga--------------aaaag----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1613731 29 -  4500979 GATTCTTGCCATGTTGAAAAG--------GGGAGGGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2949681 17 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e caeSp111.Scaffold622    339281 18 +   386604 I

a score=38.000000
s ce10.chrX              4693039 1 + 17718866 G
s caeRem4.Crem_Contig0   1613760 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2949698 1 +  4147112 a
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10031813 0 + 21540570 C
e caeSp111.Scaffold622    339281 18 +   386604 I

a score=66149.000000
s ce10.chrX              4693040 108 + 17718866 GTGTGGTCAAAAAAGGGAAATGTGAAAAGTTGGATTTGATGCCATAAATTACATCTCTCAGCGCCCCAATTTCCGGGGGCTGCGTATAAAAAGAAACTGGCTTTTCTT
s cb4.chrX              10031813  95 + 21540570 ---------aaaaagaaaaaagtgaaaagtcgGATTTGATGCCATAAATTACATCTCTCGACGCCCCAATTTCC--GGACTGAGCAT--aaaaaaaCTGACttttttt
i cb4.chrX              C 0 I 603
s caeRem4.Crem_Contig0   1613761 104 -  4500979 GAGTagtt-gaaagaagaaatgtgaaaagtcGGATTTGATGCCATAAATTACATCTCTCGGAG-CCCAATTTCC--GGACTGAGCATGAAAAGAAACTGACTTGTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    339299 104 +   386604 GGGtggtt-gaaaaaagaaatacgaAAAGACGGATTTGATGCCATAAATTACATCTCTCCGCG-CCCAATTTCC--GGGCTGTGcataaaaagaaactgacTTCTTTT
i caeSp111.Scaffold622  I 18 C 0
s caePb3.Scfld02_0       2949699 106 +  4147112 gggtggtt-gaaaaaagaaatacgaaAAGTCGGATTTGATGCCATAAATTACATCTCTCCGCG-CCCAATTTCCGGGGGCCCTGCATAAAAAGAAACTGACTTGTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=4938.000000
s ce10.chrX              4693148 16 + 17718866 ATGCA-GCACGTAGCAC
s caeRem4.Crem_Contig0   1613865 16 -  4500979 CTGAA-GCACGTAGCAC
i caeRem4.Crem_Contig0  C 0 I 703
s caeSp111.Scaffold622    339403 16 +   386604 CTGAA-GCACGTAGCCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2949805 17 +  4147112 CTAAAGGCACGTAGCCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10031908 603 + 21540570 I

a score=-1892.000000
s ce10.chrX              4693164 107 + 17718866 AA-ATGCACATATTTCAATGAACTTTTCAGAAACTTTTTTTGCGGGTTGCGGCAGAAAAACGAATCAAAGGGAAAAA--ACCGCAAGACGAGAAAAAA--GTTCGGAAAAAA-
s caeSp111.Scaffold622    339419  94 +   386604 ACTATgcagttctttttttgagt-------aaatttcattt-----------ctcaaaaccAAATTCTAGAGATGAAtcacaaagaaaataaataaattgattcgggaaaaa-
i caeSp111.Scaffold622  C 0 I 548
s caePb3.Scfld02_0       2949822  69 +  4147112 ACTATTCAAAGCTctg-------------------------------------tcgaaa--aaattgaagcgaaaaa--acaacaaaaaaagaaaaat---ctcgaaaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10031908 603 + 21540570 I
e caeRem4.Crem_Contig0   1613881 703 -  4500979 I

a score=197.000000
s ce10.chrX              4693271 7 + 17718866 CTATCGT
s caePb3.Scfld02_0       2949891 7 +  4147112 ttagcat
i caePb3.Scfld02_0      C 0 I 596
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10031908 603 + 21540570 I
e caeSp111.Scaffold622    339513 548 +   386604 I
e caeRem4.Crem_Contig0   1613881 703 -  4500979 I

a score=0.000000
s ce10.chrX              4693278 1039 + 17718866  
e caePb3.Scfld02_0       2949898  596 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10031908  603 + 21540570 I
e caeSp111.Scaffold622    339513  548 +   386604 I
e caeRem4.Crem_Contig0   1613881  703 -  4500979 I

a score=6785.000000
s ce10.chrX              4694317 50 + 17718866 TAACCATTAAGTTTCCT-AATTTATTATATCAGACTTAGATGATTTCCCAG---
s cb4.chrX              10032511 46 + 21540570 TGATCATTAAGCTTCTCTATCAGATTTTATCAGAT--------TTCTAATGAAG
i cb4.chrX              I 603 C 0
s caeSp111.Scaffold622    340061 49 +   386604 TGATCATTAAGCTTCCA--ATAGATGTTATCAGATCTAGATAATTTCAAGC---
i caeSp111.Scaffold622  I 548 C 0
s caePb3.Scfld02_0       2950494 49 +  4147112 TGATCATTAAGCTTCTC--TCACATTTTATCAGATCATGATTATTCCAACA---
i caePb3.Scfld02_0      I 596 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e caeRem4.Crem_Contig0   1613881 703 -  4500979 I

a score=48633.000000
s ce10.chrX              4694367 126 + 17718866 GTTTGTA-GCCTAATTATGACTTGTTGAATTGCTGA-----GAA-----GA--------------------AAATGTCAAAACCGG-AAAAGGA---AGA-CTAGTGAACCGGGACAAGAGGAAAATAACGATTTG-------GAAATGG-AAGTGCCTATAATTTGCTT
s cb4.chrX              10032557 161 + 21540570 --GTACATTCTCCATaatgactttttgaattgctGC-----GAATGACAGGAAGACAGGAGAGGCAGaaaaaaaCGTCAAACCCGG-AAAAATGACCAAA-CTAGTGAACCAGGACAAGAGACAGAAAATGGATTGAGGGTGAAGAGTGGAAAGTGGCTATAATTTGATT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1614584 138 -  4500979 GTTTACA-GCGTCATTATGACTTTTTGAATTGCTGG-----GAATGAAGGG--------------------AAACgtcaaaaccggaaaaaatgaCCAAA-CCAGTGAACCAGGACAAGAGACAGAAAATGGATTG-----GAGAAGTGGAAAGTGGCTataatttgatt
i caeRem4.Crem_Contig0  I 703 I 33
s caeSp111.Scaffold622    340110 139 +   386604 GTTTGTA-GCCTCGTTATAACTTTTGCAATTGCAATtctgagaataaaaag--------------------aaacgtCAAAACCGG-AAAATTGACCAGC-CCAGTGAACCGGGACAAGAGAAACGAAATGGATTG-----GAGAAGTGAAAAGTGGCTGtaatttg---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2950543 121 +  4147112 GTTTGTA-ACATCATTATGACATTTTGAATGGGATT-----GGATGAAAAG--------------------AAACGTCAAAACCGG-AAAAATGACCAACATCAGTGAACC------ATAGAAagaaaatggat-------------tgaaaaGTGGCTataatttg---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=-1035.000000
s ce10.chrX              4694493 11 + 17718866 ATTTTACACAT----
s cb4.chrX              10032719 11 + 21540570 ----AAATTGCAAAA
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold622    340249 11 +   386604 atttgaattac----
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0       2950664 11 +  4147112 attcaaaacgt----
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e caeRem4.Crem_Contig0   1614722 33 -  4500979 I

a score=16966.000000
s ce10.chrX              4694504 255 + 17718866 CTATTTT-ACACTATTGCCA-----------AAGAAAAAATAAATCTGTTTGGATTAATTTTCTAGTATTTA-----------------GAAAATA----CTTTTTAGGAA--------------------------------------TATATTAAGTGAATT----T---------------------TATATTTTCAAAAA-------AATAATTCAACATATGAAA--------------AGCGAG-------AA-AAAGACATTTCAAAATGCAATCG----CAATAATGTG---TCTCT---AGATACGCATGAAGAG----GGCGTTTCAACTC-GATACCTCCCTTCATCAAGGTCAATCAGATATGGGGGAAGA---------AGATGTTCGAAA
s cb4.chrX              10032730 316 + 21540570 -------------CCCacca--------gtgaaaaaaaaacaga-aaaaatgatgtaattttatatatttcatatttttgttcaaaaactctAGTA----CTACCCAAAAATGACGATGCAAATGTTGTTCTCTCTATGTTAAGTCTTGCAAACTAGAGCAATTGGCcccgaaaaaagaaggattctccgtttttttttcagca----------------------------------------aacgaga------agaaaaagttgattGAAATGGAGTGGAAGTAAATAATGCGCCTTCTCT---CAAAATGCATGAAGAGCGGCGCCGTTTCAATTC-GATACCTCCATGCATCAAGGTCAATCAAATA---GAGAAGA---------CGATGttcgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1614755 256 -  4500979 TTATTTT---ATGTTCACTACTATGGGTTTGTAGTAAAGACAAA-ATGAATCCAGAGTTTTGCTATTTTGCA-----------------GCCagca----atttccaaaaa--------------------------------------------aaaataatt----ccaaaaaaaaaa----------tctattttttagcA----------------------------------------AACGACG------AG-AAAAGTTGATTGAAATGAAGTGGAAGTAAATAATGCGTCCTCTTTTCACAAAATGCATGAAGA-----GATGTTTCAACTC-AATACCTCCCTGCATCAAGGTCAATCAGATA---GTGAAGA---------TGATGTTCGAAA
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold622    340272 235 +   386604 CGGTTTCGACATGGTCGCCC--------ATgaataaaata---------------gtttttttggttttcca-------------------aATGATTGCGAATTCAGta-----------------------------------------------aaaaact----c-------------atttc---tatttttttctgga----------------------------------------agca---------aa-aaaagttgattgaAATGAAGTGGAAATAAATAATGCGGtctattt---gaaaacgaatgaagTGAGG-AGCGTTTCAACTC---TACCTCCCTGCATCAAGGTCAATCAGATa---gtgaagacgaagaaggagATGTTCGAAA
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0       2950687 233 +  4147112 ctatttc-------------------------------------------------------------ttca-------------------aagaa----gaattcagaag--------------------------------------------agaagaatt----ctga----------attct---tctttttttttgcaaaatatggAGAATCCGGAAAACGAAAGAAACCCCGAATCTAGCAGGGGTggacaa-aaaagttgattgaaatGAAGTGGAAGTAAATAATGCGCCCTCTC------------GCAAAGTGAGG-AGCGTTTCAAATTCGATACCTCCATGCATCAAGGTCAATCAGATA---Gtgaaga---------aaatgttcgaaa
i caePb3.Scfld02_0      I 12 I 17
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=-3132.000000
s ce10.chrX              4694759 32 + 17718866 CGCAAG--TGAAAATGACCCGTG-CGTCAGTGTTC-----
s cb4.chrX              10033046 34 + 21540570 catt----gaaaaagaagaggaa--gactATGTAACTATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1615011 40 -  4500979 CGTTAGCGGGAGAATGAGCGGAGATGTGTCTGTTACTCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    340507 32 +   386604 -ACTAG--TGAAAATGAGCGACGAGGCGTCTATTA-----
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2950920 17 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=132057.000000
s ce10.chrX              4694791 568 + 17718866  
s cb4.chrX              10033080 646 + 21540570  
i cb4.chrX              C 0 I 1165
s caeRem4.Crem_Contig0   1615051 638 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    340539 635 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2950937 630 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=12.000000
s ce10.chrX              4695359 3 + 17718866 -AAC
s caeRem4.Crem_Contig0   1615689 3 -  4500979 TAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    341174 3 +   386604 -AAC
i caeSp111.Scaffold622  C 0 I 408
s caePb3.Scfld02_0       2951567 3 +  4147112 -AAC
i caePb3.Scfld02_0      C 0 I 357
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10033726 1165 + 21540570 I

a score=232.000000
s ce10.chrX              4695362 15 + 17718866 CGGTGACGTTGATCA
s caeRem4.Crem_Contig0   1615692 15 -  4500979 GTGGCCCATTGATCA
i caeRem4.Crem_Contig0  C 0 I 509
e caePb3.Scfld02_0       2951570 357 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10033726 1165 + 21540570 I
e caeSp111.Scaffold622    341177 408 +   386604 I

a score=0.000000
s ce10.chrX              4695377 1331 + 17718866  
e caePb3.Scfld02_0       2951570  357 +  4147112 I
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10033726 1165 + 21540570 I
e caeSp111.Scaffold622    341177  408 +   386604 I
e caeRem4.Crem_Contig0   1615707  509 -  4500979 I

a score=327.000000
s ce10.chrX              4696708 25 + 17718866 CAATATTTCGTCTCAAAACTATATG
s caePb3.Scfld02_0       2951927 21 +  4147112 caatatttaa----aaaattcaatt
i caePb3.Scfld02_0      I 357 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10033726 1165 + 21540570 I
e caeSp111.Scaffold622    341177 408 +   386604 I
e caeRem4.Crem_Contig0   1615707 509 -  4500979 I

a score=243.000000
s ce10.chrX              4696733 28 + 17718866 -TTCTCATTTATTACGGAACAGATTTGAT-
s caeRem4.Crem_Contig0   1616216 27 -  4500979 -TTATCATTTATTA-AAagcaaaataaca-
i caeRem4.Crem_Contig0  I 509 C 0
s caePb3.Scfld02_0       2951948 29 +  4147112 ttttatattattga-aaagcaaaattaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e cb4.chrX              10033726 1165 + 21540570 I
e caeSp111.Scaffold622    341177 408 +   386604 I

a score=493.000000
s ce10.chrX              4696761 6 + 17718866 AAAAAA-
s cb4.chrX              10034891 6 + 21540570 -aaacac
i cb4.chrX              I 1165 I 1
s caeRem4.Crem_Contig0   1616243 6 -  4500979 -aaacac
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2951977 6 +  4147112 aaaaca-
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934    72664 4004 +   591668 I
e caeSp111.Scaffold622    341177 408 +   386604 I

a score=599.000000
s ce10.chrX              4696767 2 + 17718866 CA
s cb4.chrX              10034898 2 + 21540570 aa
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1616249 2 -  4500979 aA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    341585 2 +   386604 CA
i caeSp111.Scaffold622  I 408 C 0
s caePb3.Scfld02_0       2951984 2 +  4147112 aa
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934    72664 4004 +   591668 I

a score=89435.000000
s ce10.chrX              4696769 571 + 17718866  
s cb4.chrX              10034900 495 + 21540570  
i cb4.chrX              C 0 I 1198
s caeRem4.Crem_Contig0   1616251 492 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    341587 506 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2951986 510 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    76668 461 +   591668  
i caeJap4.Scaffold17934 I 4004 C 0

a score=-3202.000000
s ce10.chrX              4697340 4 + 17718866 -ACAT
s caeRem4.Crem_Contig0   1616743 2 -  4500979 ---GT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    342093 4 +   386604 -tatt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2952496 4 +  4147112 -aaat
i caePb3.Scfld02_0      C 0 I 146
s caeJap4.Scaffold17934    77129 4 +   591668 aaaa-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10035395 1198 + 21540570 I

a score=546.000000
s ce10.chrX              4697344 2 + 17718866 AT
s caeSp111.Scaffold622    342097 2 +   386604 at
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    77133 2 +   591668 at
i caeJap4.Scaffold17934 C 0 I 28
e caePb3.Scfld02_0       2952500 146 +  4147112 I
e cb4.chrX              10035395 1198 + 21540570 I
e caeRem4.Crem_Contig0   1616745 2 -  4500979 I

a score=-576.000000
s ce10.chrX              4697346 13 + 17718866 ATTTTAGTTAATT
s caeRem4.Crem_Contig0   1616747  2 -  4500979 ----------AC-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    342099 13 +   386604 attttattttatt
i caeSp111.Scaffold622  C 0 I 27
e caePb3.Scfld02_0       2952500 146 +  4147112 I
e caeJap4.Scaffold17934    77135 28 +   591668 I
e cb4.chrX              10035395 1198 + 21540570 I

a score=-1671.000000
s ce10.chrX              4697359 110 + 17718866 ACAGTAAGAATTTTTGCTTAGTTTTTCGTTTGGCCACATAGTTTAAAAGATGCTGATTTTGGTTTTTTACCTTCACTACCGTACTACCGTACTACCATTTGTATACCGTA
s caeRem4.Crem_Contig0   1616749  42 -  4500979 -------------TTATTTAGTAATGCTGCTacccgaaaattttaaaa--------------------------------------------------ttgtatc-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2952500 146 +  4147112 I
e caeJap4.Scaffold17934    77135  28 +   591668 I
e cb4.chrX              10035395 1198 + 21540570 I
e caeSp111.Scaffold622    342112  27 +   386604 I

a score=-363.000000
s ce10.chrX              4697469 32 + 17718866 TTTTG-----CTATGTTTAATGAATTCCACCAAACCA
s caeRem4.Crem_Contig0   1616791 14 -  4500979 -----------------------ATTCCATTACACCG
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0       2952646 37 +  4147112 TTTTGAGTAATGATAATAAATAAATCTGTTCGAACCA
i caePb3.Scfld02_0      I 146 C 0
e caeJap4.Scaffold17934    77135 28 +   591668 I
e cb4.chrX              10035395 1198 + 21540570 I
e caeSp111.Scaffold622    342112 27 +   386604 I

a score=-2001.000000
s ce10.chrX              4697501 178 + 17718866 AGAAGTTGATTTTAATGATAACAATATATTGCTCACTGG-GATAAAAGTTGTCAAAGTTGTGGTGCAATA--------------CGGATGA---AAAAAAATTTGCATA------------------ACATTAAAAA--ATTGGTTATGAACTTTTTAATA----CGCATTGGTGACAGGTAAATCCATAATAATTGTCAG---------------CAAGTTTAATACATA-------ATTT
s caePb3.Scfld02_0       2952683 235 +  4147112 A-----TGGTTCGCCTAGCaaaaaactaaagctcctcggcaagaaaaaaccccgaacatactgtaaaacaacttaaaaaaTGGACGGATGCCACAACAATGCTTGTTTAGTCTCTACTAATGACCAAACACCAACAGTTGTTAGCTATATAGTTTGCAAGAAAGTCACACGAGTCAAGTGCAACTCCA--GTAGTTGGCAAATCAACGCGTTTGTATAATTTCAACACTTGCATcaagattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    77135  28 +   591668 I
e cb4.chrX              10035395 1198 + 21540570 I
e caeSp111.Scaffold622    342112  27 +   386604 I
e caeRem4.Crem_Contig0   1616805   8 -  4500979 I

a score=-1848.000000
s ce10.chrX              4697679 37 + 17718866 TTTTTTGTTGTTTTTTAACATAAT------TGCATCCAATTTT--------------
s cb4.chrX              10036593 44 + 21540570 tTTGTCTTTAGTTTTTAATCTAATCAAAACCACTTCACATTCAC-------------
i cb4.chrX              I 1198 C 0
s caePb3.Scfld02_0       2952918 40 +  4147112 ttctttcacagtT-----------------CACACCTCATTCTCTCCATCAAGATTT
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17934    77135 28 +   591668 I
e caeSp111.Scaffold622    342112 27 +   386604 I
e caeRem4.Crem_Contig0   1616805  8 -  4500979 I

a score=546.000000
s ce10.chrX              4697716 1 + 17718866 T
s cb4.chrX              10036637 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1616813 1 -  4500979 T
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0       2952960 1 +  4147112 T
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17934    77135 28 +   591668 I
e caeSp111.Scaffold622    342112 27 +   386604 I

a score=607.000000
s ce10.chrX              4697717 2 + 17718866 TA
s cb4.chrX              10036638 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1616814 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2952961 2 +  4147112 CA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    77163 2 +   591668 ta
i caeJap4.Scaffold17934 I 28 C 0
e caeSp111.Scaffold622    342112 27 +   386604 I

a score=375526.000000
s ce10.chrX              4697719 489 + 17718866  
s cb4.chrX              10036640 494 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1616816 493 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    342139 488 +   386604  
i caeSp111.Scaffold622  I 27 I 23
s caePb3.Scfld02_0       2952963 492 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934    77165 502 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-4851.000000
s ce10.chrX              4698208 16 + 17718866 TTATGAACCTTTCCCA-
s cb4.chrX              10037140 16 + 21540570 TTCAACACCGTCTCCA-
i cb4.chrX              I 6 I 9
s caeRem4.Crem_Contig0   1617310  1 -  4500979 ---------------a-
i caeRem4.Crem_Contig0  I 1 I 12
s caePb3.Scfld02_0       2953459 13 +  4147112 ---tgcatattttctg-
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934    77667 13 +   591668 ----ACGTGGATCATaa
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    342627 23 +   386604 I

a score=136661.000000
s ce10.chrX              4698224 170 + 17718866 TTAAATTACCCAAAAACGAGAGCAATGTAGAATCCTCCTTGAATCCAGTAGTACCAGGCAACTGCATTGGGGATCGGGTGGAACGGCCAGTTTCTCCAACATTCCGTGATATCATACAAATGTGATTCATGTAGCACAAGGTACAACCTGTGTAGAAGATCAGTTAAAGA-----------
s cb4.chrX              10037165 153 + 21540570 --CACTCACCCAAAGACGAGCGAGATGTAGAATCCTCCCTGAATCCAATAATACCATGCGATGGTGGTTGGGATCGGGTGGAACGGCCATTTCCTCCAGCATTCTGTGATGTCATAGAAGTGCGACTCGTTGGACACAAGGTACAATCTG---------------AAATC-----------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1617323 155 -  4500979 TTCCCTTACCCAAAAACTAGTGCAATATAAAATCCTCCTTGAATCCAGTAGTACCATGCAATAGCTGTTGGGATTGGATGGAACGGCCATTTTCTCCAGCATTCCGTGATGTCGTAGAAGTGTGACTCGTTCGACACAAGGTACAATCTG---------------AAACA-----------
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold622    342650 154 +   386604 TTGTGTTACCCGAAGACAAGAGAAATGTAGAATCCTCCTTGAATCCAATAATACCATGCAATAGCGGTTGGAATTGGATGGAACGGCCATTTTCTCCAGCACTCTGTGATGTCATAGAAGTGCGACTCATTGGACACAAGGtacaatctg----------------aaaa-----------
i caeSp111.Scaffold622  I 23 C 0
s caePb3.Scfld02_0       2953472 155 +  4147112 aaatcctaCCCGAAGACAAGAGCAATGTAGAACCCTCCCTGGATCCAGTAGTACCATGAAATGGCAGTTGGAATTGGATGGAACGGCCATTTCCTCCAACATTCGGTGATGTCATAGAAATGTGACTCGTTGGACACAAGGTACAATCTG---------------TAAAA-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    77680 166 +   591668 aaaaaTTACCCAAAGCAAAGCGAGATGTAGAATCCTCCTTGGATCCAATAGTACCACGCGATTGACGTGGGGACCGGGTGGAATGGCCAGTTTCGCCAGCATTCCGAGATGTCGTACAAGTGAGATTCGTGGGACACAAGGTAGAGTCTG---------------AAAGATAATTTATGGA
i caeJap4.Scaffold17934 C 0 I 2044

a score=-13437.000000
s ce10.chrX              4698394  95 + 17718866 GCACAAAATAGTTATGT------------TTTTTTCTGACTTAGGCCCCTGACTTTGCTATCTCTTGTCATCGACAATTTTTGTCTAGCTACTGATAAG---------CAACTAGA
s cb4.chrX              10037318  44 + 21540570 ACac-------------------------cattttctaaat--------tttttt--gtgtc--------ttctat---tgtgattga--------aa------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1617478  65 -  4500979 ATATTAATCAGTTGTACAGTG--------TATTTTCTGCCT--------TGATTT--ATATC--------AATGATTTCTGTCATTGA--------AAG-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    342804 101 +   386604 acaacagatAATGATGTGATGTAGTTATGTGGCTcct-ttttctg----tgattt--GTATCAGTTTTAAGAGTAAATTTATGATTGACTACTGATAAGACCACTAGA--------
i caeSp111.Scaffold622  C 0 I 75
s caePb3.Scfld02_0       2953627  73 +  4147112 ACAAGAGTTAATGATGT------------TGGCTCCTAAATTATG----TGACTT--CTATC--------GAGAAAAGTTATGTTTGGCTACTGATAAG-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    77846 2044 +   591668 I

a score=-19213.000000
s ce10.chrX              4698489 174 + 17718866 TTATGAAAATACATTGTTGCCCTGCCAACTATCGATTTATTTATGACAGCGAAAAGATAACTTGAATCAGTGCTTGTTTTTAATATAACCGGTACTTGTAGCTGCTGAGAACTCCTGAGTGT----TTCGAAAATGTTAACTCACGAAAAATGAACCTATATACCATTTTA---AACAACT
s cb4.chrX              10037362  64 + 21540570 --------------------------gaaaatttacA----------ACCGATAAGATAA-CTCAATTA----------ATAATAGTGTAG--------------TTATGATT-------------TCTGA-------------------------------------------AACTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1617543 124 -  4500979 ------------------------TTGTCAATTTACATGTTTCGACTACTGATAAGAGAGTCCCAAATAAGGCCATGTCACAAAAATTCTA--------------TCATGACTC--GATTGTAGGCTCCGA-----------CACAAAAAGATAGC------AAAACGTGAGGTAACAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2953700  69 +  4147112 --------------------ACTATCAATTATTTACTTTGTG-----GTCGagaaaattggttcaaaaa-------------------------------------gatgaat-------------ttctg-----------catgaa--------------------------aacaact
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold17934    77846 2044 +   591668 I
e caeSp111.Scaffold622    342905  75 +   386604 I

a score=-826.000000
s ce10.chrX              4698663 52 + 17718866 TTAGGCTAATAAATGATTT-TTTCTAAAGCCAAAAAAAAAGGGAATTCACGTT
s cb4.chrX              10037426 40 + 21540570 TTAGTGTAACCACTACTTCATTTGtcggtttaaaaaaaaa-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1617667 44 -  4500979 TTTTCTTAGagactgttttttttccggGATCAAATTAACA---------TATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2953769 27 +  4147112 I
e caeJap4.Scaffold17934    77846 2044 +   591668 I
e caeSp111.Scaffold622    342905 75 +   386604 I

a score=-5891.000000
s ce10.chrX              4698715 61 + 17718866 TGAATTACTCAAAATTACAAATTTTCGGATTTTAACAAGATACATAGCCGCAAAATTTGCC
s cb4.chrX              10037466 16 + 21540570 ---------------------tt------------------------accctaAATTTTCC
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1617711 19 -  4500979 ------------------TGTTC------------------------ACATAACATCTGCC
i caeRem4.Crem_Contig0  C 0 I 117
s caePb3.Scfld02_0       2953796 55 +  4147112 TGAacttct-----tctctatttttaagGCTGTAAGGAG-TGTACAGACTCAAAATCAGTT
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold17934    77846 2044 +   591668 I
e caeSp111.Scaffold622    342905 75 +   386604 I

a score=-12752.000000
s ce10.chrX              4698776 195 + 17718866 AAAATTGGGAAACATTGTTTCAGCAAAAAGCACACAAAAAAACTACCGAAAACTATATGAACTTGTTTGGAAAATAGTTAAAGTTGATTGAAAAGATGCAAAAATAGGCGGAGTAGTTGTCGAAGTGTAAATTTGGTTGAGAAGTTGCTAAAGTTGAGTGAAAATTGAGGCAAATTTTCGACGTTCTACAGCTAT------
s cb4.chrX              10037484 102 + 21540570 -------GAAAACGTTGT----------------------AACCGTCAACAAGT----------------------GTCTAGGTTGAT--------------AATAGTTCTAACAACCTTTGAGCAtgtattttcattttaaaa-----------aagggcaaaaaatcACG-------------------CGATAA----
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       2953851 100 +  4147112 -----GTGAAAACCATG----------------------------------------------------------------GTTCGA---------------------------AACCTTTTCTCTCTAGTGTGCGCTGTAAAAC--CAagtgataagaaaagaaaaccgcAAATTTT---CTCTCTCGGTCGatgatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    77846 2044 +   591668 I
e caeSp111.Scaffold622    342905  75 +   386604 I
e caeRem4.Crem_Contig0   1617730 117 -  4500979 I

a score=1106.000000
s ce10.chrX              4698971 17 + 17718866 --TAGGGAAGTACCTTAAT
s cb4.chrX              10037586 17 + 21540570 --CGGAGAAACACCGCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1617847 17 -  4500979 --TAAGAAAAAACCgcagt
i caeRem4.Crem_Contig0  I 117 C 0
s caePb3.Scfld02_0       2953951 18 +  4147112 tattgagaagaagctcaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    77846 2044 +   591668 I
e caeSp111.Scaffold622    342905 75 +   386604 I

a score=-1047.000000
s ce10.chrX              4698988 7 + 17718866 -CTTAATT
s cb4.chrX              10037603 4 + 21540570 TTTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1617864 4 -  4500979 tttc----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    342980 7 +   386604 -CTCAGTT
i caeSp111.Scaffold622  I 75 C 0
e caePb3.Scfld02_0       2953969 0 +  4147112 C
e caeJap4.Scaffold17934    77846 2044 +   591668 I

a score=65250.000000
s ce10.chrX              4698995 123 + 17718866 TTTTTTCATTGCTTC------AAA----AAAT-------CTTACCCGCAGACAAAGGAAATTGTATAGTATAGAGCTCGCATTGCGCATTCAGCCATTCTGCTGTATTTCTTCTCACGATCCAGTGTTCCCCCTGAAACA---
s cb4.chrX              10037607 112 + 21540570 ---------------------AAACTGGAAGA-------CTTACCCGGAGCAGAAGGATAGTGTGTAGTAGAGAGCTCGCATTGCACATTCCGCCATTCGAGTGTACTTCTTCTCACGATCAAGTActccttctgaaaaa---
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig0   1617868 137 -  4500979 -tttttaatcGATGA--TACTAAAGTTCAAGACTAAAACCTCACCCGGAGcaaaacgaaatgaaataGTAGAGAGCTCTCATTGCACATTCCGCCATTCGAGTGTACTTCTTTTCACGATCCAACACACCTtctttaaaa---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    342987 126 +   386604 ATTTCTGATCGGTC-------AAAGTAGAAGA-------CTTACCCGCAACAAAACGAGACTGTGTAGTAGAGAGATCTCATTGCACATTCAGCCATTCTAGTGTATTTCTTCTCCCGATCTAACACtccttctgaaaaa---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2953969 109 +  4147112 ------aatc------------------aaaa-------ctcacccTGAGCAGAAGGAGAGGAAGTAGTAGAGAGCTCGCATCGCACATTCTGCCATTCGTGTGTACTTCTTTTCTCGGTCTAACACTCCTTctgtaaaa---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    79890 132 +   591668 ----ttcattcattcacttTCAAAGATCAACA-------CGTACCCAGTGATAAACGATATTGTGTAGTACAAGCATCGCATTGCACATTCCGCCATACGACTGTATTTTTTCTCCCTGTCCATTTGTCCCTCTGAAATCCAA
i caeJap4.Scaffold17934 I 2044 C 0

a score=-8099.000000
s ce10.chrX              4699118 33 + 17718866 AATTTCAAATTTCTCGTTTTTTTTTGGAGAACT------------
s caeRem4.Crem_Contig0   1618005 29 -  4500979 ---atgagattattgggtttgaatt-cagaatc------------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    343113 32 +   386604 ctttcttgttttctgggataattat-taaaatt------------
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0       2954078 33 +  4147112 cattttttatggTTTGACTCATGGTGTGAAGTT------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934    80022 28 +   591668 ----------------AATATTAAT-TAGAAACGAAGGAAAAAAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10037719 45 + 21540570 I

a score=153074.000000
s ce10.chrX              4699151 374 + 17718866  
s cb4.chrX              10037764 387 + 21540570  
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0   1618041 415 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    343147 374 +   386604  
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0       2954113 477 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934    80050 419 +   591668  
i caeJap4.Scaffold17934 C 0 I 60

a score=-889.000000
s ce10.chrX              4699525 78 + 17718866 TGGGTGGGTTGGAATGCGGGAATCAAAAAGAG-------------TAAAA----TTTTTGTTAAAATCATTTTTGCTGATTCATTCTGTTAAACA
s cb4.chrX              10038151 77 + 21540570 ----TGTGTTGgca----gtttgcaaaaaaaggagaaaagggACATAGAACCGCCCAAAAGgtgattcatttt----------ttatttaaaagg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1618456 65 -  4500979 -AAAGGTGTTGGCA----GTCAGcacaaattg--------------aaaactg-cCGAGAGGtgaatcatttt----------ttatttagaaGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    343521 56 +   386604 -AGGTGAGTTggca---------aaaaatttg--------------aaaa----ccatGGTGTGAATCA-TAT----------CTATTCAACACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2954590 66 +  4147112 TAGGTAGGCTGGCAC-CGTgtagaatattttg--------------aaaa----ctgcggcatgattcatttt----------ttatttaaaagg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    80469 60 +   591668 I

a score=31870.000000
s ce10.chrX              4699603 193 + 17718866 AACTATA---GC---------------GAACGTGAAAGAA----TAATGAAAAACAAACGG-------------------GCCC----AATGTTTGCGCAGACATTGACACTCACT--AGCATCCAAAACTGCA------AAAAAT--GGCGGGAAATGGGAA-GAAAATGACGGATTGAC--GGATATATA-GGAGATGTTGCGACGACGATCGAATGTGTTATCAGTAGAGCAGTGTTGCATT-----G------AACGAC
s cb4.chrX              10038228 211 + 21540570 AACACAATTGGT-----------GAcggaaaatggcaaaaaaataAACGCAAAACAAACGACGGGGTCCCCTCCCGCCCGCCGC-----GTGTTTGCCCAGACA-----------G--ACTGTCCTAAACTGCAAGCGAGaaaattttggcgggaaaaagtga--gaaattgcG------TTGGGATA--ACTGAAGATGTTTCGTGG--------CTAGGTTATCAGTAGAGCAGTGTTGCATT-----GAGCGGTTGCAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1618521 184 -  4500979 AACGGAAC--GC-----------AACGCGGGGTGACAAAA----CAACGCAATACAAACGG-----------------GGCCGC----AATATTTGCGCAGACAGTGACACTC-GG--AGTAtttaaaactgca------aaaaatatgGCGGGAAAAAGAAACGTAAACGGAG------T--GGATA--AA-GAAGATGTTTCGGAG----------AGGTTATCAGTAGAGCAGTGTTGCATT-----G------TGCGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    343577 201 +   386604 AACGGAAC--GCCGAGAGTATAGAGAGAGGggtgaaaaaa--acaaacgtCAAACAAACGA-------------------GCGC----TATATTTGCGTAGACAGTGACACTC-CG--AGTCTCCAACACTGCa------aaaaaaaGCGcgggaaaaagaaa-cgcGACGGAG------T--GGATAACTA-GGGGATGTTTCGGGG---------GAAGTTATCAGTAGAGCAGTGTTGCATTATTCAG------TG-GGC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2954656 175 +  4147112 AACTGAAC--GC----------------GAGGTGACAAAA----CAACGCAAAACAAACGA-------------------GCGC----AATATTTGCGCAGACAGTGACACTC-GGACACTATccgaaactgca------aaaaatggc---GGGAATGAAAA-GGTAAAAGAG------T--GGATA--TA-AAGGATATTACGGGG---------AAGGTTATCAGTAGAGCAGTGTTGCATT-----T------TG-GGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    80529 144 +   591668 ------------------AAcaatgaaaaaagtaaaaaaa-----aaaaccaaataggTGG-------------------GTGACGTGATTGCTTGCGCAAAC-----------GC--AAACTttgaaactgca------aaaaaaggC---GGCGGATGAAA-----------------C--GGATA--AG---------------G--------CTGGATTATCAATAGAGCAGGGTTGCATC-----G------ACCGGC
i caeJap4.Scaffold17934 I 60 I 4932

a score=91842.000000
s ce10.chrX              4699796 765 + 17718866  
s cb4.chrX              10038439 914 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1618705 791 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    343778 793 +   386604  
i caeSp111.Scaffold622  C 0 I 277
s caePb3.Scfld02_0       2954831 765 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    80673 4932 +   591668 I

a score=2552.000000
s ce10.chrX              4700561 18 + 17718866 CGGG----CTGGCTATTGCGCA
s cb4.chrX              10039353 22 + 21540570 AAAGAAAACGAACCATTGCGCA
i cb4.chrX              C 0 I 1095
s caeRem4.Crem_Contig0   1619496 18 -  4500979 AGGG----CGAACTATTGCGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2955596 18 +  4147112 AGAG----AGGCCTACTGGCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    80673 4932 +   591668 I
e caeSp111.Scaffold622    344571 277 +   386604 I

a score=1816.000000
s ce10.chrX              4700579 47 + 17718866 -------GCCCATATCTAGGAGGCTTAGAACAGACTTAACTACAATCGGGTTTG-
s caeRem4.Crem_Contig0   1619514 53 -  4500979 GACTCTGTCCTAGAGTGGGCTAGTTCAGG--AGGTTCAAATGTAATCGGATTTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2955614 44 +  4147112 GAC--------AGACCCGGCCTGTTCAGG--AGGGTTGAGTGCAATCGGATTTG-
i caePb3.Scfld02_0      C 0 I 205
e caeJap4.Scaffold17934    80673 4932 +   591668 I
e cb4.chrX              10039375 1095 + 21540570 I
e caeSp111.Scaffold622    344571 277 +   386604 I

a score=518.000000
s ce10.chrX              4700626 19 + 17718866 TGTC---TACTATAATACTTGT
s caeRem4.Crem_Contig0   1619567 22 -  4500979 TGTCGAATGCAAGAATAGTTGT
i caeRem4.Crem_Contig0  C 0 I 315
e caePb3.Scfld02_0       2955658 205 +  4147112 I
e caeJap4.Scaffold17934    80673 4932 +   591668 I
e cb4.chrX              10039375 1095 + 21540570 I
e caeSp111.Scaffold622    344571 277 +   386604 I

a score=0.000000
s ce10.chrX              4700645 1500 + 17718866  
e caePb3.Scfld02_0       2955658  205 +  4147112 I
e caeJap4.Scaffold17934    80673 4932 +   591668 I
e cb4.chrX              10039375 1095 + 21540570 I
e caeSp111.Scaffold622    344571  277 +   386604 I
e caeRem4.Crem_Contig0   1619589  315 -  4500979 I

a score=521.000000
s ce10.chrX              4702145 12 + 17718866 AAATAGTATCTT
s caeJap4.Scaffold17934    85605 12 +   591668 aaatagtgttcA
i caeJap4.Scaffold17934 I 4932 C 0
e caePb3.Scfld02_0       2955658 205 +  4147112 I
e cb4.chrX              10039375 1095 + 21540570 I
e caeSp111.Scaffold622    344571 277 +   386604 I
e caeRem4.Crem_Contig0   1619589 315 -  4500979 I

a score=546.000000
s ce10.chrX              4702157 2 + 17718866 TT
s caeRem4.Crem_Contig0   1619904 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 315 C 0
s caeJap4.Scaffold17934    85617 2 +   591668 TT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2955658 205 +  4147112 I
e cb4.chrX              10039375 1095 + 21540570 I
e caeSp111.Scaffold622    344571 277 +   386604 I

a score=-741.000000
s ce10.chrX              4702159 2 + 17718866 ---TT
s caeRem4.Crem_Contig0   1619906 2 -  4500979 ---TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    344848 2 +   386604 ---tt
i caeSp111.Scaffold622  I 277 C 0
s caeJap4.Scaffold17934    85619 4 +   591668 TAAT-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2955658 205 +  4147112 I
e cb4.chrX              10039375 1095 + 21540570 I

a score=-5563.000000
s ce10.chrX              4702161 28 + 17718866 TGTTCACATGTT--AGATTAAAATAGGAAA
s cb4.chrX              10040470 28 + 21540570 TGTTgctatttt--tgatgaaaattcgTAA
i cb4.chrX              I 1095 I 6
s caeRem4.Crem_Contig0   1619908 29 -  4500979 TGTTCACGATATAGTGATTACAACT-GAAG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    344850 25 +   386604 tgttCAAAACTTAGCAACAATAtag-----
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    85623 27 +   591668 TGTTTAAAAGAA--AGTTAAAGTCCAGCA-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2955658 205 +  4147112 I

a score=176107.000000
s ce10.chrX              4702189 432 + 17718866  
s cb4.chrX              10040504 494 + 21540570  
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1619939 432 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    344875 462 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2955863 462 +  4147112  
i caePb3.Scfld02_0      I 205 C 0
s caeJap4.Scaffold17934    85650 505 +   591668  
i caeJap4.Scaffold17934 C 0 I 111

a score=-15101.000000
s ce10.chrX              4702621  92 + 17718866 T-GT-------------CCTAGGCTATGTAAATTCGGT--------------------------------------------GCGAAAA-GTGT-------AATATAATCGATAAAAAGATCAATGATATTATAAAATCCAACACGAATAAGATCAAA
s cb4.chrX              10040998 109 + 21540570 A-TT---ATAATAACAGTCTATTCT-------------------acgtttttgtttgaaaaatgatctGAGAAACAG-------GGAAA-CTG-------------AAGGGTTGGTCGGATCAAAGATAT-----AATAAAACAGGAGACAGATCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1620371 130 -  4500979 T-GT-GGATAATAATAGTGTAGTCTCTGGGGGTTT--CTAAAAGActttactttttcataaa------gagaaaaaaacttattagAAA-TTGC------------AAGTGTGAGAAGGTTCACAGAATT-----GAAAAGACAGGAAACCgataaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    345337 136 +   386604 TAGGGGGATAATAATAGGCTAGTCTCATTGGTTTTGGCTAA-AGAAATTG----TGAA--ACAGTCGTGGGAAACAA-----TTGGAAATTTGTGTCGGCGGAAATGTGGACAATCAGGATCAAAGATAA----GGATGCAAC------ACgatcaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2956325 138 +  4147112 T-GAGGGATAATAACAATGTAGTCTACTTGAATTTGTTGAGtagaaattgt--ttgaatgaaTGTTGAAAGAGTCTA-----TGGGAAA-ATGTACGGACAAAGAGAACAATAAAAAGGATCAAAGATAA-----GATGCAAC------CAGATCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    86155 111 +   591668 I

a score=78980.000000
s ce10.chrX              4702713 258 + 17718866 TTTCGCAGACT---------TTGT--T--GCTGTCT---GT----------TATACAAAGACTGATCCTTGG---ACAGGTCTT-CTCACCTGGACAAAGTGTTATCGTATCCTATCAAGATGCCTTCCGAATTTCTCTGCATTTCCTGCAACATTATT---GTTTCTTTATCTTTCACCTGATTTGTA-------GATTGTTTCATTTTGTTCAACATGCTAAATGTAAATAAAATGCaaaat----------aaaatgaaaa-----------aataaattaagaatatgtatatacattatttattaattGCAGTC
s cb4.chrX              10041107 228 + 21540570 TATC-----CTTTCCCCTTCAAGT--A--TCAGTCT---G-----------CGTATCAATACTGATCCTTGT---ACACGTCGTCCTCACCTCGACAAAGTGTTGTCGTATCCGATCAGGATGCCTTCCGAATTTCTCTGCATATCCTGCA-----------atattttcatc--------tttttttc------gtattctctctttttttgcaacatgctagatttgaa----------aat--------gaaaaatgcaaa----------------------acgCTATATGTACATCATTTATTATGCCGAAAC
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   1620501 272 -  4500979 tttt-----ct---------gaataga--TCTGTCT---GTCTT-TCCTATCTTATCAAAATTGATCCTTGT-------------CTTACCTGGACAAAGTGTTATCGTATCCAATCAGGATGCCTTCcgaatttcttttcatatccTGCAACATattcaatatattttcatcTGTCCGCTTCTCTGTC------TCATTGTTTCGTTTTGCAGACCATGCTATATGCAAAtggaattctgaat--------aaaaaaagcaaaaatgtaaaacggaaaaCTGAATACATTATATGTACATCATTTATTATTCGGAAAC
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold622    345473 256 +   386604 tttt-----ca---------atgt--ATCTCTGTCTATCGTTGT-------CTTATCTGGACTGATCCTTGT---ACACGT----CTCACCTGGACAAAGTGTTATCGTATCCAATCAAGATGCCTTCCGAACTTCTTTGCATTTCCTACAACAAACTCg--atatttttatcatttttcttttcaata---gaTTACATGTTGCATTTCGTTCAACATGCTATATGTAAATGTGTTGTGAAATGGCCAAAGGCCGAACGAAAT----------------------GCGTTATATGTACATTATTTATTATTC------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2956463 249 +  4147112 ATCA-----CA---------ATCT--A--TCTGTCT---GTCGT-------CTTATCAACACTGATCCTTGTACAACACGT----CCTACCTGGACAAAGTGTTATCGTATCCAATCAAGATGCCTTCCGAATTTCTCTGCATGTCCTGCAAtatactca--aaatttttcctgttttctctttttgtgtcTGGTTCATTGTTCCATTTCGTTCAACATGCTAAATGTAAATGCAATATGAAAT--------GCCGAATTCAAA----------------------ACGGAATATGTacattatttattattc------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    86266 200 +   591668 ----------------------------TTCTGTAT---GTTTTGTCTTTTCCTATCAAATGTGATCCTTGA---ACAGGTCTT-CTCACCTAGACAACGTGTTATCGTATCCGATGAGAATGCCCTCCGAATTTCGCTGCATATCCTGCAACATTAGAG--AT---------------------CACA------CGGTTATTTCATATC-----ACATGCAATGT---------ATGTTTATT-------------ATGTACG----------------------------TATATACATTGTTTATTATTTCAAATC
i caeJap4.Scaffold17934 I 111 C 0

a score=-4449.000000
s ce10.chrX              4702971 19 + 17718866 TTTCCAAAT---TGAAA--CAAAA
s cb4.chrX              10041347 19 + 21540570 TTTCCACGT---TTTCATGCAA--
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold622    345729  5 +   386604 -------------------CAAAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2956712  5 +  4147112 -------------------caaaA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    86466 22 +   591668 ACTGGAGGTTGCTGAAA--CAGAa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1620773 20 -  4500979 I

a score=40205.000000
s ce10.chrX              4702990 177 + 17718866 CCAAATGCGA---------------------------ATGCAAA-------------ACCAATAAAAAA---ATGAAATCGAG---------ATTGACAGGTTTCATATTGAATATTATTACAAACTTGCATGTTAGTA-------TCAAGGTAACAAATG-TGTGTATTG----TGTTAGAAACGTATAATTGGAGGCTCCCAAAGAGCAGGGGGCTG-AAATTA------GTTAAAGCAATTTATA
s cb4.chrX              10041366 156 + 21540570 -----------------------------------AAATGCAAA-------------GCCAAT-TGAAATGCATTGAATAAAA--------TAATGAAAG------TATTGAAT---------AAATTG-ATGTTAGTA-------GTCGGGAAACAGAAAATGCATA-CGAAAGTGTTAAAAACGAATAATAGTTGGCTCCCAGAGAGCCGGATTCTG------AAAG---GTTAAAGCAAT-CAA-
i cb4.chrX              C 0 I 481
s caeRem4.Crem_Contig0   1620793 161 -  4500979 ---------------------------ctcattcaggATGCAAA-------------ACCGATAAAAAATGCAACAAGTTAAG---------AATGACTG-------GTTGAAT---------AACTCGTTTGTTAGTA-------GCCGGGTAAATAGTATTGT----------TGTTAAAAACGTATAATGGTTGGCTCCCAGAGAGCCgggttctg-aaaacaaaa---gttaaAGCATT-CAAA
i caeRem4.Crem_Contig0  I 20 I 8
s caeSp111.Scaffold622    345734 192 +   386604 CCGATTTCGATTCGcattctcacttttctcattcaagaTGCAAA-------------ACCGATAAAAAATGCAAC-AGAATAA---------AATGACAG-------GTTGAAT---------AACTCGTTTGTTAGTA-------Gtcgagaaaacaaaa-tgtagA-TG----TGTTAAAAACGAATAATAGGAGGCTCCCAGAGAGCTGGTGGCTGTAAATAAAGG---GTTAAAGCATT-CATC
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0       2956717 194 +  4147112 CCGATTTTGACGCGCATTCACGTTTTTCTC-------ATGCaaa-------------accgataaaaaatgcaacaaaaataa---------aatgacaG-------GTTGAAT---------AACTCGTTTGTTAGTAGTAGTTCGTCAGAAAAACAGTA-TATATT-GG----TGTTAGAATCGGATTATAGGAGGCTCCCAAAGAGCCGGAGgctgaaaaataatg---gttAAAGCATTCCAAA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934    86488 173 +   591668 -----------------------------------acatacgaaaaaaaaattgtacatCAATTTCAAACGCAACCAAAAGAAAATGCAATCAATGGCAG-AACAATGTTGAAT---------AACTCG----TTAGTA-------TGTAATTAGTCAGGA-TCA----GG----TGTTAGAAACGTATTATCGGAGGCTGCCAAAGAACTGGAGCCTGCAAATAAATGTCTGTTAGA----------
i caeJap4.Scaffold17934 C 0 C 0

a score=-4507.000000
s ce10.chrX              4703167 16 + 17718866 ACAGTTGCTCACAGAA
s caeRem4.Crem_Contig0   1620962 11 -  4500979 TCATTCGTTCA-----
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold622    345934  8 +   386604 TCAATTGT--------
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0       2956919  8 +  4147112 TCATTGAA--------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934    86661  6 +   591668 -AACGTG---------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10041522 481 + 21540570 I

a score=407588.000000
s ce10.chrX              4703183 721 + 17718866  
s cb4.chrX              10042003 634 + 21540570  
i cb4.chrX              I 481 C 0
s caeRem4.Crem_Contig0   1620973 699 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    345942 677 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2956927 711 +  4147112  
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17934    86667 731 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-7217.000000
s ce10.chrX              4703904 28 + 17718866 A--GAGGGCGGT-----TGCAAAAAAAAAAGTTGA
s cb4.chrX              10042637 26 + 21540570 AACGTTGCCCGT-----CACAGAAAAGATAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1621672 24 -  4500979 A--GTAAAGCGT-----CCTCTAAAAATTAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    346619 25 +   386604 ------GACTGTATACCCACAAGAAAGCTAA----
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    87398 21 +   591668 -----TGTATGT-----AGTATTAATGTAGT----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2957638 16 +  4147112 I

a score=140590.000000
s ce10.chrX              4703932 256 + 17718866 ACCGATCTGTCAGCAA----------------TTACCAAACGGATCAATCATAGTGTGTCGC--------------------GCTTAATTTAGATGTGCAATTG----------AAAGA---------GAACCGCGTTCC-TAAAAAC-GTCGTTTCGG-TCTAAAAATAA-ACTAACCTGGTCGAGAAGACTTCCCCATACTGACATGTGATCCGGTGGGAACGTGGTGAACAGTCCAGCGGTGGCTTGACCTCCAGTCACCTGACGGATGCCGCCGTCCAGCTTCCACAGATCGTCTGTAATTTGGATAATTT
s cb4.chrX              10042663 238 + 21540570 -----------ATCAA----------------TTATCCATCTCATCAATCAAACTGCGAAGCT--------------acattgataactttttataAGA-ACTG--------ATATCGA--------------GTGTTCTATAAAGAT-ATCGAGTT---TCCAAAAATAGCACTGACCTGATCAAGAAGGCTTCCCCATACTGACATGTGATCCGATGGGAAAGTGGTGAACAATCCAGCCGTGGCTTGACCTCCCGTCACCTGCCGGATACCGCCATCCAGCTTCCACAAGTCATCTGAAAGTT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1621696 276 -  4500979 ACCAATCTATCATCAA----------------TTATCAACAGCATCCATCTTATTGCGATGCGGACA-----AATTAGCAGCGTTTACTTTTGATAAGACATTGATATTTCTATATCGA---------GAACTGTGTTCTATAAAGATGAATGAGGCAcatctaaaaataaaactgaccTGATCAAGAAGACTTCCCCATACTGACATGTGATCTGATGGGAACGTGGTGAACAGTCCAGCGGTGGCTTGACCTCCAGTCACCTGACGGATTCCACCGTCCAGCTTCCACAGATCGTCTGAAACAT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    346644 262 +   386604 ACCAAACTGTCATCAA----------------TTATCAAACTCATCAATCTTCATGTGTCCC----------TATCAACGACGATAACTTTTGATATGAAACGG--------ATgtctatttttgtttgaatggTGTTCTATAAAGAT-AC--CCGTGCAACCAAAATACCCACTGACCTGATCAAAAAGACTTCCCCAAACTGACATGTGATCCGGTGGGAACGTGGTGAACAGTCCAGCGGTGGCTTGACCTCCAGTCACCTGACGGATTCCACCGTCCAGCTTCCACAAATCGTCT----------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2957654 256 +  4147112 ATAGAACTGTCATCAA----------------TTACCGAAGTCATCAATCATCATGAACCGCGCACACAAATTAGCAGAGATAATAACTTTTCAT------------------------------TCGGAATTGTGTTCTCTAAAGAT-AAGGACGTGCAGCTAAAAATAACACTGACCTGATCAAAAAGACTTCCCCATACTGACATGTGATCCGATGGAAACGTAGTGAACAGTCCAGCGGTGGCTTGACCTCCAGTCACCTGACGGATTCCACCGTCCAGCTTCCATAAATCGTCTGGaa------------
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17934    87419 221 +   591668 TCTGGTCTCACAACAAACCATAACAGCCACTTTTATCAAATGCAAcaatc--------------------------------gttatttttt--------------------------------------------ttttgtgtggcT------------TTCAAA------ACCAACCTGATCAAGAAGACTTCCCCACACTGACATGTGATCCGGCGGGAACGTGGTGAACAGTCCAGCGGTAGCTTGACCTCCAGTCACCTGGCGGATTCCGCCGTCAAGTTTCCATAAATCGTCTgaaatttaaacaaatt
i caeJap4.Scaffold17934 C 0 C 0

a score=-35081.000000
s ce10.chrX              4704188 138 + 17718866 GAAACTGATGACTTACAGAGGATCAATGGACTACATTATATCCCATGTATGGGCCTAACTATGTATAAACATGGATCAGAAGTTGCCAATATATTGGCAAACCTTTGGCAGGCTTGGTCTAGGTTCTCGGCGCTCCAA
s cb4.chrX              10042901  94 + 21540570 ---CCACATGATACTCTTA--CCTCAGATACCG--TCATTTTTTAAGAAGAG--------ATTATTCGA-----------------------ACCGgc--aaatttgagctcagtaATCTTGATTC----CAgtgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1621972  63 -  4500979 -----AAATGACTCGCTTA-GTTTGAAGCACTG------CTTCCAAGGATAG-------------------------------------------------CATTTGAGCACAACGACCTGAAT--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    346906   6 +   386604 ----------------------------------------------AAAAAG--------------------------------------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2957910  67 +  4147112 -----ccaagtttttcaaa--aataaaacgatg------------AGAAAAG--------ATGTATGAA--------------------------------CAGTTGAG----ACATTCTGG--------TATTTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    87640   0 +   591668 C

a score=-50891.000000
s ce10.chrX              4704326 129 + 17718866 GTTTATCTTGTGCGCAGTCTTAGCTAAAGGTTTTCCTAATTTTTTTTTCAATATTTCAGATAATTTATTATTTTTAGTCCAAT-CTTTGACAAGAATCCAGCGCCACAATTATTTCAACCTAATTATATC
s cb4.chrX              10042995  82 + 21540570 actatgaaa----------aaatttgctgaCT-----GATATAT-----AACTTGTCAGGGAAACAAATA--agtaattcatc-agttgacgaaaat-------------------------ttgatatc
i cb4.chrX              C 0 I 97
s caeRem4.Crem_Contig0   1622035   8 -  4500979 ------------------------------------------------------------------AGCG--AGTA------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    346912  26 +   386604 -------------------TCAATTTCAGGCT-----AGTTT--------------------------------------------------------------------------------TCTATATC
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0       2957977  81 +  4147112 ACGCTGATAGTACCTCGGCTCACTCTCAGACTTT-AGAGTTT------------------------AGC---ATTGCTACGCC-AGCTTCTAGAAAAC--------------------ACTAATTATATC
i caePb3.Scfld02_0      C 0 I 51
s caeJap4.Scaffold17934    87640  40 +   591668 ----------------------------------------------------------------------------ttccgTCTTGTTTCCTGTTATCTATCGGTACC--------------ATGATGTC
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4704455 69 + 17718866 ACTCATAGTAGCAGAAATCAAGATTTCACAGCTAATTCACACAATGCTCACACGAACAAACTCATTCAA
e caePb3.Scfld02_0       2958058 51 +  4147112 I
e caeJap4.Scaffold17934    87680  0 +   591668 C
e cb4.chrX              10043077 97 + 21540570 I
e caeSp111.Scaffold622    346938  6 +   386604 I
e caeRem4.Crem_Contig0   1622043  0 -  4500979 C

a score=458803.000000
s ce10.chrX              4704524 688 + 17718866  
s cb4.chrX              10043174 701 + 21540570  
i cb4.chrX              I 97 C 0
s caeRem4.Crem_Contig0   1622043 692 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    346944 678 +   386604  
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0       2958109 705 +  4147112  
i caePb3.Scfld02_0      I 51 C 0
s caeJap4.Scaffold17934    87680 690 +   591668  
i caeJap4.Scaffold17934 C 0 I 3228

a score=2045.000000
s ce10.chrX              4705212 207 + 17718866 CAATCAT--TT-------TGCGGTTACGC-----ATTCAACAGTGAATCA-TATACAACTACT------ATAAACATTTAGGGGTGCTCAAGT-TACATTTTCA---------------------------------------------TGGCTATAACCTAAT-TGTGTCT---AAAATGACTTTTGGAAATTTTCAAAGAATTTTTTCGAATACCTTTCACATGACTTTTTTGTATCAAATTCAATT----ATGCGCAACATCTAAAAGTTCAATTC-----CAG
s cb4.chrX              10043875 257 + 21540570 TTGTCAATGTT--TTAACTTCAACCGTGAATCATGCATGACAATGTGTCACTGTCTACGCAGAGGgactaaaaaattctggacacACAAAcca-tgaattctgaaaaatcgtaaaGTCGGAAGTGTGACCTGAAACATTC----GTACCTGACTATAACTCAGT---TATCTTCTAGTATGActtttcgtaattttcaaaGAGCGCAG-----AAGTATTCACATGAtat-------gaaaattaaattaacGATGC---AGGTTCTCCGgttgaattc-----caa
i cb4.chrX              C 0 I 96
s caeRem4.Crem_Contig0   1622735 243 -  4500979 TT-TCATGGTTACACAGTTACTGTCATGA--CATATTGTGCAGTGATTCA-TGtctgaataaa---acaaaaaagttttcagggAACATACTGCTGAGTTCT---------------------------CTGAAACATTTATCAGCAGAAGACTATAATTGAATTTGTATTCCGAAGTATGACTTATAGTAATTTTCAAAGAGCGCTGTCGTAAAGTTTTCACATGACTTTT-TGTAGCAAATTACATT----ATGCGCAACATTCTTGGGTTCACTTT-----CAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    347622 198 +   386604 GCGTCAC--TT--CTCGTTATTGAAACGT--------TTGCAATGAATCA-TGTCTGtgcaaa------aaatgttttaagaGGGACACAAAA-C------------------------------------------------------TGActataatttcat-----tttgtaaGTATGACttctgataattttcaaagagcGTTTTCGTATATATTTCCcatgatttttttata--aattcaatttgattatGCGCAACATTCAAGAGTTCAGTTT--------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2958814 205 +  4147112 CCATGGC---------------AAAACGG--------TTAC-ATGAATCA-TGTCTGC----A------AAATGTTTAACGGGGAACATAGAA-TAAAGTTTCA-------------------------CCGGATCTTTG---------GGACTATAATTAGAT-----TT----GAAGTTACttcagacaattttcaaagagcGTTTTCGTATACATTTCGCATGACTTTTCTGTAATAAATGAATTTAATTATACGCAACATTCACGAGTTCAGTTTTCTGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=-17518.000000
s ce10.chrX              4705419  62 + 17718866 ------------------------------------------TTCGGATT-----CAACTAGTTCAG-----AGGAATGTTTATTTTTCGTAAGAATAATAA--------------------------------TGAGTGCAAAAT
s caeRem4.Crem_Contig0   1622978  95 -  4500979 -------------------CTTGTTTTTATGAACTA-----AGTTGGA-------AAAAGCTTTTGGCTGATTTCGACGTCATCAGACAAGA--------------------TTGAATACCTGAATAATAAGTTTGAGTGAATATT
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold622    347820  69 +   386604 --CAGACT------AGTAGCTGG------------------ATATGGG-------AAACGATCTT-------TGTACCGACAATTGGTAACAAA-------------------------------------ATTCTAAGGAAAAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2959019 145 +  4147112 ACTGGACCACAAAAAGCAACTGATCTTTGTGTCACATTCCTAGAcgggttgaaaaaaaagaactcacgAGA-TGCAATGATAATCTACAGTAAAATGAATAATACAATATTTCTGAATAGCCACGTGAACTATTCGAGTAGGAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e cb4.chrX              10044132  96 + 21540570 I

a score=-6504.000000
s ce10.chrX              4705481 16 + 17718866 ATGAATTCACACACCG------------
s cb4.chrX              10044228 14 + 21540570 ----GTAGAAACG-GG-----TAA----
i cb4.chrX              I 96 C 0
s caeRem4.Crem_Contig0   1623092 18 -  4500979 ----ATAGGCACA-TG-----TGATGCG
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold622    347889 16 +   386604 ----ATTAACTTA-TGATCTG-------
i caeSp111.Scaffold622  C 0 I 68
s caePb3.Scfld02_0       2959164 11 +  4147112 ----TCTAACACA-TG------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=-2590.000000
s ce10.chrX              4705497 42 + 17718866 ACAGGTCATTCATATTTTTATGCGT-TGTCTGGACCAGACTCT
s cb4.chrX              10044242 24 + 21540570 -------ATACCAAATTTTATGGGGTTTTCT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1623110 30 -  4500979 AGATggcattctgaaatttatgtgA-ATTCT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2959175 41 +  4147112 AGAAgtaattcaatcatttttaatG-AGTCTGGTCTGGTGTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e caeSp111.Scaffold622    347905 68 +   386604 I

a score=-19717.000000
s ce10.chrX              4705539 385 + 17718866  
s cb4.chrX              10044266 443 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1623140 544 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    347973 451 +   386604  
i caeSp111.Scaffold622  I 68 I 87
s caePb3.Scfld02_0       2959216 395 +  4147112  
i caePb3.Scfld02_0      C 0 I 454
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=1507.000000
s ce10.chrX              4705924 8 + 17718866 TAATTTTT
s cb4.chrX              10044709 8 + 21540570 taactttt
i cb4.chrX              C 0 I 629
s caeRem4.Crem_Contig0   1623684 8 -  4500979 TCGGTATT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    348511 8 +   386604 tggttttt
i caeSp111.Scaffold622  I 87 I 2
e caePb3.Scfld02_0       2959611 454 +  4147112 I
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=-8079.000000
s ce10.chrX              4705932  51 + 17718866 ---------AAATCTG---------------------GAAACATTTGAAAGTCC-------CGGCGAACA------TTTGAGATTCGACC--------------------TTAA---------------------------
s caeRem4.Crem_Contig0   1623693 137 -  4500979 CACTGTGTAGTATTTGTATGCCGTGTCAAAACACAACAAA----TTGAAAGGTCAGAAAAAAGGGGTGCAAAATGTTCCATATTCCATACACTCTACTGTTTCAGTACTTTTAAAACTGCAAATTCCACATTTGAGCTGAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    348521  81 +   386604 ---------gaatctg---------------------aGA----TGGAGAG----------AAGCACGCA------TTCGTGTTTCCTGTAAAAACCTTTCTGAATA---TTGAAGCATCAAAAAAGTCCTCTG-------
i caeSp111.Scaffold622  I 2 I 8
e caePb3.Scfld02_0       2959611 454 +  4147112 I
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e cb4.chrX              10044717 629 + 21540570 I

a score=51723.000000
s ce10.chrX              4705983 338 + 17718866 TAATTTATGTGATCTTCTCATCTTGTAGTCGGAAGTTATG-----ATATCAAAAGTC-ATT------TTTCATTATCTTTAATGTGTATTTAAGGTTATTGA---------TAGAAATAACCATTGAAGGTCACATGTAATAA--CTCAAAGTACAGGTCG--TTGAATGAA------GATGCA---------AAAAAACTTTCCAG----CCCAATATTAGAA--------TTGTTCCTGATGTTATGGCGG-ATTCTTGGATATCAAGTCAATCTTGATCTGGTG--------------------GCTAACAAATTTGACGAAT---TTCGTGACTAATTGAGGTTTTGAGGTTGCTGCTGTAGAGATAA-CTTTGATGAAGTGAAAGATAAAATGCATCAGGAACACACGA----A------
s cb4.chrX              10045346 362 + 21540570 TGATTCAAATGATCTTCA--------TGTCGGAAGTATTTCACCATCAACCACCCAT-ATT------TCATGTTCA----AATGtgtatttgattttttcgcaaaaaaagaaaggaatgACCATTGAAGGTCACATGTGATAAATCTCAAAGAACAAACCA--TCCCACTCA---AAAATCACc--------aagataattttttaa-acattgaattggagaa----------gtctgaaaaatcca--caa-ag----aaagatc-agaaacattttttttgtagacaCTACTACTTCAATTTGGGATAACGAATTTGACGAATC--TTCATGACTAATTGAGGTTTCGAGGTTGCAGCAGCAGAGATAAGTGTTGGTGACTCAGTAGATAAGGCACATCAAGTTC----------ATCCGGA
i cb4.chrX              I 629 I 791
s caeRem4.Crem_Contig0   1623830 366 -  4500979 ---------TGATCTTTA-----TCTTCTCGGAAGTGTCT-----TCAACCACAATA-ATT------TTCTGATAATCTTCATgtgtatttgatttttatgt-----ttgaCGGAAATAACTATTGAAGGTCACATGTGATAAAACTCGAAGTACCGATCACTTTTTATTTAGCCGGAGACATT----------GATAATTGTTAAGTACATGTACGTGAAGAAGCTCATTTTTGTCCGGATACACTT--CAGCAC----CAAGATC-CAACACTTTTTTCCTGAAG---CTACCACGTAACAGTCGACTAACGAATTGGACGAATG--TT-ATGACTAATTGAGGTTTTGAGGTTGGGGCTGCAG-GATAAATGTTGCTGACGTAGAAGATAAGACACATCAAGTACATtgaa----atcctga
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    348610 369 +   386604 TGATCCAGATGATCTTCT--GTTTCCAGGTGGAAGTTCCT-----GCATCAataaatcaataaaaaattttacttttAGTTATGTGTATTTGATCTTTTTGC-----AGTAAGACAATGACTTTTGAAGGTCACATGTGACACACTTCGAAGTACAGATTT--CCTCAGTTG------AACATC--------TAGATAAGAACATGGAACCTTTGATTTCAGCA--------TTGTTCCAAAAGTTCA--CAG-ATTTGCAAACATC-AGAAACTTTTCTTCCAGGA----TATT-CAACATGTTAGACTAACGAATTTGACGAATGATTTTATGACTAATTGAGGTTTTGAGGTTGAGGCTGTGGAGATAAAGTTTGCTGACGTAAGAGATAAGATGCATCGAGTAC----------TTTGGG-
i caeSp111.Scaffold622  I 8 C 0
s caePb3.Scfld02_0       2960065 373 +  4147112 TGATTCCAgtgatctcat--ttttctagtcGGAAGTAACT-----TCAAacgttattcatt------tttcatcgtttgTATTGCGTATTTGATCTACTTGC-----AATAAGAAAATGACCATTGAAGGTCGCATGTGACACACTTCGAAGTACAGATCA--CTTCATCTG------AACATCAATCAAGAGAAATagtcatctgaaaaaactgataacgaaa--------aaattctggaTCTGCA---AC-ATCAGCAACTTTT-CCTAAGATTTATTCCGGGG----T--------AGATTTGGCTAACGAATTTGACGAATCATTTTATGACTAATTGAGGTTTCGAGGTTGAGGCTGTAGAGATAAGTTGTGCTGACGTAGAAGATAAAATTCATTAAGTACATCCAAATCGTTCGTG-
i caePb3.Scfld02_0      I 454 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=-38934.000000
s ce10.chrX              4706321 264 + 17718866 ACATCCTTAAGTGGAACACGGAAAAGGA----TAAGATTTCCATAATT-----TTTGTCAGCATCTGAAATATGGAAGA--GCATTAATTGAAAACTCaaaataaaaaataaaaaattggttttttgaaaataattttga----------------------------------------aatttttttC-------------------------ATCTTTAGCAGAGG---TCATAATAGGAGGCGAGCATCCAATTCAGATAAC-ATCTCTCAATTTATTGAAACGTTTCTAAGAATGCAAGAAACTTTGA-----------------------AAACCTTACGGAGCAATAAAAATCACAATTT
s caeRem4.Crem_Contig0   1624199 165 -  4500979 --------------------------------------------acat-----CTTG-----ATATCAAACAGAGACAACTGATTTACTAGGATGTACAAACAA----ATAAAGTGGGAACCGTCTGAACA-------------------------------------------------AATCCGTTTT----------GCTCTA---------TTTCTTGGTGGAGA---CCATGGTTTC---------------TCAATTCATCCTCACTGGTTTTGCT-----------------TTATAAAGCTTCTA--------------CGTCACCACGAAT---------------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    348979 180 +   386604 ATGTC---------------------------CTGGATGTTCGAAAAT-----CTTG----CAGCGTTCCATGGGTGAA--GGGGAACTTATGTTTATAATAAAGGTaatgaaatggaga------aaa---------------------------------------------------aagttgttca--aaataaaaactata---------tatTATGGGCAAGA-----ACGATTGC-------------AACTAATTAGC-ATTATTTGGTGTGTAAAAAC------------TCAACAaacttttc--------------------------------------------------gttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2960438 329 +  4147112 AAGTC-TCCagtggaaaataaaaaaacttagtttgggattttgaaaataattacttG-----AACGTTGaaaaagataa--gaagcaaagaagtaaacaaaaaa--caacaaaaccgTAG------GAAcacataaattatttttgttctgagtTGATTGACTtcatcaagagaaaaaagaagtagttCAGCAgatgaaaacaacaacataaagcaattttagagaaaatatACACAAATAC-----------TAGACGAAGTAACAATCATATGTTATTttacaacatt--------tttaaaaagttttttttaaagctagATTCTGTCAGCAGAAATATCTGGG---AATAACTACCGCAGTTT
i caePb3.Scfld02_0      C 0 I 64
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e cb4.chrX              10045708 791 + 21540570 I

a score=-4029.000000
s ce10.chrX              4706585 60 + 17718866 GGGCTCTAATATTTCCCaaataaa---ttaaaataagacaaaataagacaaaatTCTTGAAGT
s caeRem4.Crem_Contig0   1624364 40 -  4500979 --------GTGTCTTCTGGAGTAA---TCAAGTCGGTGCGAAGCAGCATAA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349159 31 +   386604 -------------ctctagcattattttcagatcttcgTGGAAT-------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2960767 64 +  4147112 I
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e cb4.chrX              10045708 791 + 21540570 I

a score=-30616.000000
s ce10.chrX              4706645 178 + 17718866 ---AAATTCGTTCCTAGACTAGACAAGATCGG------TTCAAAAACAAATTT------ATTACTTCCAACATTATTGTT-----------------CTCCTAATA-CTATTA-------------------AGCTTTACattaaa--------ttaatta-------taatt--tatca------------ttttt-----------------aGTTAGAAAACTTTCAAGCCAATTTTCTCGAGTTTGTCTTTCCTTTCATGAGAGC---------------------------------------AGTATGC-----------
s caeRem4.Crem_Contig0   1624404 106 -  4500979 TCAAAAC-------------------------------CAGAAACACCTGCCA--------------------------------------------ATCCTAGTAGCTTGTA-------------------AGCATTCTCCTCCA--------AAAACCT-CCACATTCATGATTCTCC------------TTCTC-----------------GATTCCAA----------------TTCTGAG---------------------------------------------------------------GACAAACAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349190 153 +   386604 --------------------------------------TATAAAAACCTATCT-----AGTATTCATCaacgtttttc-------------------tcttcaatacTTGATG-------------AGTTCAGGCATTCTATTCAA--------TAACTTT-ACACTTTCATA--TATCC------------TTCTC-----------------ATTTCTAA----------------ATCTGAGCTTTCT---GGTTTTCAAGAATCG---------------------------------------AATAATTGAGTTGTGTCC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2960831 312 +  4147112 ---aaactcaatccTGTGATTCACAAGTTCTCAACGGTGATAAAAACATACCTCTTTGagttttgttcga--tttttcattatATAGtcgagaaaattttccagcaccttctacttttttcctcacggtgaaaatatttttctcaggggaatttgaattttgatccaTTCGTa--tatacacaaaaaatttattctccAGCACGTCTCTCATTAATTTTTAATACATTT-------CCGTCTCAGTTTTgtctctattttcagaatccgatCTCAAATCGAGCGAAACATGAATCCCCCTCCGTCCACAATAATTGAGTTATGTCC
i caePb3.Scfld02_0      I 64 C 0
e caeJap4.Scaffold17934    88370 3228 +   591668 I
e cb4.chrX              10045708 791 + 21540570 I

a score=10708.000000
s ce10.chrX              4706823 34 + 17718866 --------GACC-----ACGTCATAATTCATCGGT---TACCCATTCGTC
s cb4.chrX              10046499 35 + 21540570 --------GACG-----TCGTCATAATTCACTTCTT--TCTCAATCCGTC
i cb4.chrX              I 791 C 0
s caeRem4.Crem_Contig0   1624510 37 -  4500979 --------GACA-----ATGCCATAATTCACTGGTTAACCCCAATTCCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349343 42 +   386604 AACATCAAAAGG-----ACGTCATAATTCACTGCT---CGCCCATTCGTC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2961143 47 +  4147112 AGCTGCAAAGAGAGGAAACGTCATAATTCACTGGT---AACCCATTCGTC
i caePb3.Scfld02_0      C 0 I 64
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=3543.000000
s ce10.chrX              4706857 13 + 17718866 ATAATTT-CATTGT
s cb4.chrX              10046534 14 + 21540570 ATAATTTCCAATGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1624547 14 -  4500979 ATAATTTCCAATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349385 14 +   386604 ACTATTCCCACTGC
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2961190 64 +  4147112 I
e caeJap4.Scaffold17934    88370 3228 +   591668 I

a score=-13429.000000
s ce10.chrX              4706870 50 + 17718866 CGTTTGTTG------GCCGAGTCGCTCTC---TACTACAC-------GGAGCACACTCACAAAACT--
s cb4.chrX              10046548 56 + 21540570 A----ATCGAGTCGTTGTGAGTCGCCCTC---CAGCACAC---ACCCCGCGCGCGCTCACCCATAC--
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1624561 45 -  4500979 G----ATTG------TGTGGGGTCTCCGCACACAGCACTC---AACTCGAGCATACTC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349399 42 +   386604 A----ATTG------GGTGGTGTACCC-----CGGCACACTCTCCCTCTAGTCGACT-----------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    91598 44 +   591668 ------------------cgttttttccc---cggtttat---ttttCACGCTCACTCTCAAATTATT
i caeJap4.Scaffold17934 I 3228 I 2
e caePb3.Scfld02_0       2961190 64 +  4147112 I

a score=44116.000000
s ce10.chrX              4706920 124 + 17718866 GCCATCTGCCG--CCTGTCATTGTGTGCGAGTTGTGCATTTTGACGTGATGGTGTTTGCACCATTTGT--GAGAAATCTATC---------GGTTTTCTATGC---ATATTTACTTTACACTTCA-----------------------------------------------------------AGCTTCTTCCGTTTT
s cb4.chrX              10046615 118 + 21540570 GCCATCTGCCC--------ATTGTGTGCTATTGGTGCAATATGCCGTGATGGTGTTTGCACCATCAGT--GCAGCAACGATC---------GGTTTTCTATGC---ATATTTACTTTACACTTCG-----------------------------------------------------------GGATTCTTCCgtttt
i cb4.chrX              I 11 I 74
s caeRem4.Crem_Contig0   1624606 120 -  4500979 GCCATCTGCCCGAGACATTATTGTGTGCCAATGGTGCATTTTGACGTGATGGTGTTTGCACCCTAAG---GAGAAAACGATT-G-------GGTTTTCTATGC---ATATTTACTTTTCAGTTCT-----------------------------------------------------------AGATTCATT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    349441 121 +   386604 GCCATCTGCCT-----TGCATTGTGTGCTTATTGTGCATTCAGACGTGGCGGTGTTTGCACCCCTAG---TGAAGAACTATC-G-------GTTTTTCTATGC---ATATTTGCATTACACATCT-----------------------------------------------------------AGATTCTTCCGCTAA
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2961254 121 +  4147112 GCCATCTGGAT-----AGCATTGTGCGC-TGCAGTGCATTTTGCCCGTGCGGTGTTTGCACCCTCAG---TAGAAATGCATTGG-------GTTTTTCGATGC---ATATTTACTTTACACTATA-----------------------------------------------------------AGAGTCTTTCGCCAG
i caePb3.Scfld02_0      I 64 I 1
s caeJap4.Scaffold17934    91644 182 +   591668 ACCATCTGCTG--------------TACGAAATGTGCATTTTGCCGTGGCGGTGTTTGCACCAATTGTGCCAGAAGTTTACT-GCTTTCGCGCTTTTCTATGCATAATATTTGCTCTATGCCTCTTCCTTGTCGTATCGAAAAGTCACGAGCTGTGCGTGAACTCGCCTTAAAAGcctattttcgaatttatttttt--
i caeJap4.Scaffold17934 I 2 C 0

a score=-2461.000000
s ce10.chrX              4707044 26 + 17718866 ---------------------ACATTCACGATAACGTTGAATCACTT---------------------
s caeRem4.Crem_Contig0   1624726 26 -  4500979 ---------------------TCCTTCATCATAGTTATGAATCATCG---------------------
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold622    349563 26 +   386604 ---------------------ATTGCAACTATAATGAtgattcattt---------------------
i caeSp111.Scaffold622  I 1 I 36
s caePb3.Scfld02_0       2961376 26 +  4147112 ---------------------ATTTTTACAATTATGATGATTCATTT---------------------
i caePb3.Scfld02_0      I 1 I 12
s caeJap4.Scaffold17934    91826 68 +   591668 aaattcatgttttaaattgattatttaattattaaaataaaaaattgcaacgtggtgtttgcgtactt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10046733 74 + 21540570 I

a score=-3766.000000
s ce10.chrX              4707070 28 + 17718866 TTCGCTCGAGAAGGAAACGTGTATATAG
s caeRem4.Crem_Contig0   1624761 28 -  4500979 TTGACTCCTCTTTGAAACACTCGAGTGT
i caeRem4.Crem_Contig0  I 9 I 2
s caePb3.Scfld02_0       2961414 17 +  4147112 TTCACAATTGCTGATAA-----------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17934    91894 28 +   591668 taaaattcaaacgaaaataaatatttag
i caeJap4.Scaffold17934 C 0 I 4
e cb4.chrX              10046733 74 + 21540570 I
e caeSp111.Scaffold622    349589 36 +   386604 I

a score=-3692.000000
s ce10.chrX              4707098 19 + 17718866 ATAAT--TTTCGAGCGACACT
s caeRem4.Crem_Contig0   1624791 10 -  4500979 ---ATGATTTCAC--------
i caeRem4.Crem_Contig0  I 2 I 2
s caeSp111.Scaffold622    349625 15 +   386604 ACAAC--TTGCAA----CACT
i caeSp111.Scaffold622  I 36 I 1
s caePb3.Scfld02_0       2961431 15 +  4147112 -CAATg-tttcaa----tctt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934    91926 11 +   591668 ATCAT--TTTcca--------
i caeJap4.Scaffold17934 I 4 C 0
e cb4.chrX              10046733 74 + 21540570 I

a score=390535.000000
s ce10.chrX              4707117 675 + 17718866  
s cb4.chrX              10046807 686 + 21540570  
i cb4.chrX              I 74 C 0
s caeRem4.Crem_Contig0   1624803 687 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    349641 684 +   386604  
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0       2961447 722 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934    91937 728 +   591668  
i caeJap4.Scaffold17934 C 0 I 45

a score=-1827.000000
s ce10.chrX              4707792 55 + 17718866 AATCGTAATTTGGAAATTTTTGGTCTCTGAA---ACAGGGA--AATGAATGTAGTGTGTG
s cb4.chrX              10047493 53 + 21540570 aatggaga----gaaaaCTTTGACCGCCAAATCGTATGAGG--AATAGGTACATATAGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1625490 42 -  4500979 AATGT-------GACAATTCTGACCACCAAATTGAATGGGA--AGTGTGTA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    350325 50 +   386604 AATGT-------GATTATTCCGACCTCCAAA---AGTGGTAACGAAAGGAACAAAGCAAG
i caeSp111.Scaffold622  C 0 I 73
s caePb3.Scfld02_0       2962169 48 +  4147112 AATGT-------GGCAATTCTGGTCAGAAAA---ACCGGTA--GATAGgtgtgggggggg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    92665 45 +   591668 I

a score=115.000000
s ce10.chrX              4707847 2 + 17718866 CG
s cb4.chrX              10047546 1 + 21540570 -G
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2962217 2 +  4147112 gg
i caePb3.Scfld02_0      C 0 I 117
e caeJap4.Scaffold17934    92665 45 +   591668 I
e caeSp111.Scaffold622    350375 73 +   386604 I
e caeRem4.Crem_Contig0   1625532 0 -  4500979 C

a score=-3949.000000
s ce10.chrX              4707849 140 + 17718866 TTGTTTACATCAACAGTGCAATGAACATTGTT------TAAAATGTTTTCCAAAAAACTG----CAATAGAAAAGTTCATAGTACTAACTAATGAAAATATGCTTCTACAAAATCTCAAGATTTGAAACGCAATTGGTATATTAAACCTT
s cb4.chrX              10047547 126 + 21540570 GCGaggaaaacaagaaatcaGTGAACTTTGGTGTTCAGTTGTATGTTGGGAAAAATGTTG----CCACCCAGAAG------------ACGAGAAAAGATACGAGATTAGAAAGTCC----AGTTGCCGTAAAATCTGTTTTAGAAA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1625532  84 -  4500979 ---AAAGAAACAACAATCAAGTATACTTTGATGTC--GTAaca-gtttccaaaaatgttgttGACCACCCAGAAG-------------------------------------------------------TAAtcggtatttgaa-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2962219 117 +  4147112 I
e caeJap4.Scaffold17934    92665  45 +   591668 I
e caeSp111.Scaffold622    350375  73 +   386604 I

a score=-11091.000000
s ce10.chrX              4707989 84 + 17718866 ATAACTAATGTACTGTAAATGAACAACGGAGATCAAAAGAAGAATGTGACAAAATA------------AAATACCTAGCTAATAAATCAAAATGCA
s cb4.chrX              10047673 69 + 21540570 --AACTCCT----T---------------TGATCGAAaagcccctctaatagaagagacct------ccgagaggggcttaGAAAAACAGAAGGAA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1625616 41 -  4500979 -----------------------------------aaaagaacatttaaTAGTGAA------------CGa--------ttggaaaataaacaaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       2962336 85 +  4147112 ----atagt----taggaatagaaaa---tgatgaaacataccaaaaatcagaagagaaaCTGAATATCAATTCGCATTCTGAAACCCAAAATGCA
i caePb3.Scfld02_0      I 117 C 0
e caeJap4.Scaffold17934    92665 45 +   591668 I
e caeSp111.Scaffold622    350375 73 +   386604 I

a score=-1855.000000
s ce10.chrX              4708073 30 + 17718866 GAGTTATCTCGGCAATTTTTCGCTAACTTT-
s caeRem4.Crem_Contig0   1625658  5 -  4500979 -------------------------actTT-
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       2962421 22 +  4147112 -CTGAACCTTGATAATT--------ACCttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    92665 45 +   591668 I
e cb4.chrX              10047742  8 + 21540570 I
e caeSp111.Scaffold622    350375 73 +   386604 I

a score=-14251.000000
s ce10.chrX              4708103 108 + 17718866 AGCAACTCTCCTTAACCCCTTTTTACAACTT---TTGCGATTTAAATTTCTAAAGTTGAAAAATGACATTTGAATCAGTGATGTGCGAAATATTTT---ATTTTTTCTCTGAAA-------------
s cb4.chrX              10047750  63 + 21540570 ----------------------Agaaaattt---ccttca--aaacttt---ttgtttgaagtcca---------------------aaatattctcaaaattagttttcgaaa-------------
i cb4.chrX              I 8 I 12
s caeRem4.Crem_Contig0   1625663  74 -  4500979 ---------ATTACAACCTACaataaaatat---ctgaaa--aaaagatacaGTATTTAGAGGCAACGGC-----------------GAgtaatttcaa---------ttgaaa-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2962443  94 +  4147112 -----------------------aaaaacatgaattttaa--TGAATTCATTATATCGGAAACTGAACATACCATAA--------CAGAAGATACTCGAGACATCTTTTTGTAAGTTTTAGTTGAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    92665  45 +   591668 I
e caeSp111.Scaffold622    350375  73 +   386604 I

a score=-7794.000000
s ce10.chrX              4708211 120 + 17718866 ACTTTACGCTTTTCACACGTTCTTTTTTTTAACATACCACA-----------TTCAAATTATACATTGTAAATTCACTGTTACAACTTAATTAGATTTTTCACATAGAATGTACTTGCCATGTATAGCATC---
s cb4.chrX              10047825  50 + 21540570 ---------TCCTGATG-------------accaaaaaata-----------gtcaaactcaaaaatataaa---------------------------------------------------ataattTCTTA
i cb4.chrX              I 12 C 0
s caePb3.Scfld02_0       2962537  86 +  4147112 ----AACACTtttaaaa-------------aacagagaaaacaagCGTTTCCGCAACAGTCAAAACTATACATG------------TTATCCGAGTCCGTGATAC-----------------CAAAGTTTCT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    92665  45 +   591668 I
e caeSp111.Scaffold622    350375  73 +   386604 I
e caeRem4.Crem_Contig0   1625737   0 -  4500979 C

a score=91.000000
s ce10.chrX              4708331 1 + 17718866 A
s caeSp111.Scaffold622    350448 1 +   386604 A
i caeSp111.Scaffold622  I 73 C 0
e caePb3.Scfld02_0       2962623 0 +  4147112 C
e caeJap4.Scaffold17934    92665 45 +   591668 I
e cb4.chrX              10047875 0 + 21540570 C
e caeRem4.Crem_Contig0   1625737 0 -  4500979 C

a score=29.000000
s ce10.chrX              4708332 1 + 17718866 T
s caeSp111.Scaffold622    350449 1 +   386604 C
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    92710 1 +   591668 T
i caeJap4.Scaffold17934 I 45 C 0
e caePb3.Scfld02_0       2962623 0 +  4147112 C
e cb4.chrX              10047875 0 + 21540570 C
e caeRem4.Crem_Contig0   1625737 0 -  4500979 C

a score=243332.000000
s ce10.chrX              4708333 485 + 17718866  
s cb4.chrX              10047875 459 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1625737 453 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    350450 456 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2962623 483 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    92711 459 +   591668  
i caeJap4.Scaffold17934 C 0 I 115

a score=-1477.000000
s ce10.chrX              4708818 41 + 17718866 TACAACACAACGTTTTGTATGTTCCACATATTTGTGTTTGT
s cb4.chrX              10048334  9 + 21540570 --------------------------------agTATTTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1626190  9 -  4500979 --------------------------------AGCGTTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    350906 13 +   386604 ----------------------------CGTCGATATTTGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2963106 13 +  4147112 ----------------------------TGTTGATATTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93170 115 +   591668 I

a score=2364.000000
s ce10.chrX              4708859  73 + 17718866 AAAGT-------TTTAACTGAGTTCAACAACACATCACATTG--AATTCTT----------------------------------------------TTGCGCAAAC--------ATCAAGCG-TGACTCAAAAAAT
s cb4.chrX              10048343  62 + 21540570 TAG----------------AAGATCAGCGACATACCATGTTA--------TC------CTTACTT--------------------------------TTGCGCAAGC--------AACATGag-----tcaaacatt
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1626199  78 -  4500979 GAAGA------------CTGAGTTCAGCAACATACCAAGTCAGAAAGTATCC------CTCACTT--------------------------------TTGCGCAAAC--------AACATGCG-TGACTCAAAAAGT
i caeRem4.Crem_Contig0  C 0 I 103
s caeSp111.Scaffold622    350919  79 +   386604 GTAGA----TTGCTTTGCTAAGTTCGCCAACATACCAACTCATAAAATATC----------------------------------------------TCGCGCAAAC--------ATCATGCAGTGACTCAAAAAGT
i caeSp111.Scaffold622  C 0 I 2
s caePb3.Scfld02_0       2963119  78 +  4147112 GAGAA----ATCGCTTGCTAAGTTCAACAACATACCAAGTCATAAAATATC-----------------------------------------------CGCGCAAAC--------ATCATGCAGTGACTCAAAAAGT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934    93285 134 +   591668 aaagtcgtggccgtggcctaggataCCCGCGGTCGCGGGTTCTagaaaattcagttttctcgtttttatcatcgattttcgagaaaacaagctcaaatcgcgaaaacacagtttgatcatgaa---aatcaaaaaat
i caeJap4.Scaffold17934 I 115 I 1

a score=-4963.000000
s ce10.chrX              4708932 12 + 17718866 ---------------GACAGAAAAAAT
s cb4.chrX              10048411  1 + 21540570 ---------------t-----------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold622    351000 10 +   386604 ---------------TGCGAAACAG--
i caeSp111.Scaffold622  I 2 I 19
s caePb3.Scfld02_0       2963199 10 +  4147112 ---------------TGCGAAACAT--
i caePb3.Scfld02_0      I 2 I 41
s caeJap4.Scaffold17934    93420 25 +   591668 gatagacgcaatcggtgataaaaac--
i caeJap4.Scaffold17934 I 1 C 0
e caeRem4.Crem_Contig0   1626277 103 -  4500979 I

a score=-6454.000000
s ce10.chrX              4708944 26 + 17718866 ----------GACAAAAACTGTACATTTATTT---------TTCT
s cb4.chrX              10048412 27 + 21540570 ------------------ccgaacattttttgtgtcaGCATTGCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    351029  4 +   386604 -----------------------------------------AACA
i caeSp111.Scaffold622  I 19 C 0
s caeJap4.Scaffold17934    93445 30 +   591668 aggaaaaattgcaagaaaatatatatttct---------------
i caeJap4.Scaffold17934 C 0 I 389
e caePb3.Scfld02_0       2963209 41 +  4147112 I
e caeRem4.Crem_Contig0   1626277 103 -  4500979 I

a score=1339.000000
s ce10.chrX              4708970 4 + 17718866 AATG
s cb4.chrX              10048439 4 + 21540570 AACA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    351033 4 +   386604 AACA
i caeSp111.Scaffold622  C 0 I 3
s caeJap4.Scaffold17934    93864 4 +   591668 aata
i caeJap4.Scaffold17934 I 389 C 0
e caePb3.Scfld02_0       2963209 41 +  4147112 I
e caeRem4.Crem_Contig0   1626277 103 -  4500979 I

a score=-2551.000000
s ce10.chrX              4708974 25 + 17718866 AACGAAGAATAATAATAGTTATTAA
s cb4.chrX              10048443 22 + 21540570 ---AGCAAACACCAACTTGGTTCAC
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold622    351040 19 +   386604 -ATCGAAAATgacaacaa-----aa
i caeSp111.Scaffold622  I 3 I 9
s caePb3.Scfld02_0       2963250 25 +  4147112 gacagaaaataaaataaattgtcaa
i caePb3.Scfld02_0      I 41 I 9
s caeJap4.Scaffold17934    93868 16 +   591668 -------AACGCAAACAA--ATCAA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1626277 103 -  4500979 I

a score=82781.000000
s ce10.chrX              4708999 86 + 17718866 -TTTTCAGGTTTACTATACAAGTCAAGGATACACCATGTATGAGTGGCACAATCTCACAGTTCGAGCAACATTCCTAGGGGACGGGT
s cb4.chrX              10048480 86 + 21540570 -TTTTCAGGTGTACTATACAACACAAGGCTACACAATGTATGAATACAACAATTTGACAGTTCGAGCAACGTTCCAAGGCGATGGGT
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   1626380 86 -  4500979 -TTTACAGGTTTGGTACACTACTCAAGGATACACAATGTACGAATACAACAATTTGACGGTTCGGGCAACTTTCCAAGGAGATGGGT
i caeRem4.Crem_Contig0  I 103 C 0
s caeSp111.Scaffold622    351068 86 +   386604 -tTTGCAGGTATACTACACCACTCAAGGTTACACTATGTATGAATATAACAATCTGACAGTCCGAGCAACATTTCAAGGCGATGggt
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0       2963284 86 +  4147112 -tttgcAGGTGTATTATACTACTCAAGGATACACAATGTATGAGTACAACAATCTGACTGTCCGAGCGACGTTCCAGGGAGATGGGT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934    93884 87 +   591668 TTTTCTAGGTGTATTACACTACTCAAGGATACACCATGTATGAATACAATAATCTGACGGTTCGTGCGAGTTTTCAAGGCGACGGGT
i caeJap4.Scaffold17934 C 0 I 19

a score=833.000000
s ce10.chrX              4709085 3 + 17718866 GAG
s caeRem4.Crem_Contig0   1626466 3 -  4500979 GAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    351154 3 +   386604 tag
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2963370 3 +  4147112 aag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048566 0 + 21540570 C

a score=-1645.000000
s ce10.chrX              4709088 32 + 17718866 TTTAGATTTTTTTGAATATTTTGTGTTCATAT
s caeRem4.Crem_Contig0   1626469  1 -  4500979 -------------------------------T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2963373 22 +  4147112 ----aatttt------tgttctgtgTTGAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048566  0 + 21540570 C
e caeSp111.Scaffold622    351157  0 +   386604 C

a score=-6269.000000
s ce10.chrX              4709120 104 + 17718866 TGTTTTTCGTAGAACATGTATCAGAACTGAAAAATAACGCTTGAGCAACATGCTTATAAAACAAAGAACTAGTAACATCGAGCATGTTTCCCTTTCGTACAATG
s cb4.chrX              10048566  14 + 21540570 -----------------------GGgctttgaaataa-------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1626470  15 -  4500979 ----------------------AGAGTGGCGGACTGC-------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2963395   0 +  4147112 C
e caeJap4.Scaffold17934    93971  19 +   591668 I
e caeSp111.Scaffold622    351157   0 +   386604 C

a score=-3574.000000
s ce10.chrX              4709224 40 + 17718866 GTTTCGTACAATGGTTGTTACGGAAAACTTATTCAATTTT
s cb4.chrX              10048580 25 + 21540570 ---------------ttttcagtgtATTTTATTCAATTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1626485 15 -  4500979 ---------------TTTGCTGTGAAGCTT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2963395 16 +  4147112 --------------GTTTTGTGAATATTTA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93971 19 +   591668 I
e caeSp111.Scaffold622    351157  0 +   386604 C

a score=-341.000000
s ce10.chrX              4709264 19 + 17718866 AACAGTTTTTGATTGAC--TT
s caeRem4.Crem_Contig0   1626500  7 -  4500979 --------------GACAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2963411  5 +  4147112 --------------GAC--TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048605  0 + 21540570 C
e caeSp111.Scaffold622    351157  0 +   386604 C

a score=-1311.000000
s ce10.chrX              4709283 72 + 17718866 TTACATGAACTGAGGTAAACCGTTTAAAATGAAACTGTAAGGGGTGCTATAGTTTTGAATGGTTTCATCACA
s caeRem4.Crem_Contig0   1626507 26 -  4500979 -------------------CCGATGAAATCTGAATCCTAA------------------------TCatc---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2963416  0 +  4147112 C
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048605  0 + 21540570 C
e caeSp111.Scaffold622    351157  0 +   386604 C

a score=-2134.000000
s ce10.chrX              4709355 38 + 17718866 AATTTTAAGACATAAATCTGTCGGCTGCTTCATAATTG
s caeRem4.Crem_Contig0   1626533  2 -  4500979 ------------ta------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    351157 18 +   386604 aattttcaaatttaaacc--------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2963416  0 +  4147112 C
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048605  0 + 21540570 C

a score=311.000000
s ce10.chrX              4709393 2 + 17718866 AC
s caeSp111.Scaffold622    351175 2 +   386604 at
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2963416 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    93971 19 +   591668 I
e cb4.chrX              10048605 0 + 21540570 C
e caeRem4.Crem_Contig0   1626535 0 -  4500979 C

a score=-3704.000000
s ce10.chrX              4709395 22 + 17718866 AATAT---TAAATAAAATTCCACTT----
s caeRem4.Crem_Contig0   1626535  5 -  4500979 -----------aca---------tt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    351177 13 +   386604 caaat---tgaata---------tt----
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2963418 13 +  4147112 AATAT---CTAATA---------CT----
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934    93990 20 +   591668 AAGAtcaacaaaca---------tttttt
i caeJap4.Scaffold17934 I 19 C 0
e cb4.chrX              10048605  0 + 21540570 C

a score=115484.000000
s ce10.chrX              4709417 244 + 17718866 TTCAGAGAAAACATGGGAGAACGGCTTCGACTAGTGTTCGGTAAGCATTGGGCTCTGAATTTCCTCATACCCCTGCCGTGGAATCTACCTGTCTTAACACCTGCAATTTCTGATAGTCTTTTCCGTGTGAGGAGCAAAGTTCTTTGATTCTTTTTCCCTCCTTTCGCTTGTACATGTATGTACTTAACACATTGTCAAAACTAG-TTATTATTCACA-CGCTTACGG-GACACTTTTTCTCTCTTT-------T
s cb4.chrX              10048605 205 + 21540570 TTCAGAGAAAATATGGGGGAACGACTTCGACTAGTTTTCGGCAAGAATTGGGCGCTCAACTTTTTGGTCCCGCTTCCATGGAATCTACCCGTACTCACACCTGCAATCTCCGATAGTCTTTTCCGTGTGAGGAGCAAAGTTCTGTGACTTCTC-------------------------------AATCGGA--GGAAAAACCAG-TTCAT-------TCGTTTACGG-G-------GTGTGTATAACTTattct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1626540 231 -  4500979 ttcagagagaacCTAAAGGAACGACTGCAATTAGTTTTCGGCAAGAACTGGGCCCTCAACTTCCTGATCCCACTTACATGGAACTTGCCGGTTCTCACTCCAGCCATTTCCGATAGTCTTTTCCGCGTGAGGAGCAAAGTTCTGTGACTTTTCTCAC-CTCTTTTGTGTTTGCGTTT---TATTCATTGTA----AAAAACTAG-TTTATGTTCGAATCGTGTACGG-GA------GTGTATGTAA-------t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    351191 235 +   386604 ttcagagaaaacatGGGAGAACGATTACGATTAGTATTTGGAAAACATTGGGCTCTCAACTTCATAGTCCCTCTTCCATGGAATCTTCCAATTTTAACACCAGCAATCTCTGATAGTCTTTTCCGTGTGAGGAGCAAAGTTCTGTAACAGTTCTCCG-CTCGTCAGCTACTATCTTT--GCATTTAGAACA--gtaaaaactagttttttccTCCAATCGTTTACGG-GA------GTGTATGTAA-------T
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0       2963438 230 +  4147112 ttcagagaaaatatggGAGAACGATTGCGGTTGGTGTTTGGAAAGAATTGGGCAATCAACTTCATTGTCCCTTTGCCGTGGAACTTACCAATTCTAACGCCAGCCATTTCCGATAGTCTTTTCCGTGTGAGGAGCAAAGTTCTGTGACTTTCCAACATTTTATTTATTGCTGTCTCT--GCATTT--------GTAAAAACTAG-TTTGTATTCCAATCACTTACGGCGA------GTGTATaacc-------t
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934    94010 202 +   591668 tgcagagAAAATCTGGGTGAACGTTTTCGCCTAGTATTCGGTCGAAATTGGTTTGTCAATTTCCTCGTCCCACTGCCATGGAATTTACCAGTGTTGACGCCTGCTATATCGGACAGTCTGTTCCGAGTTCGAAGCAAAGTTCTTTAAAATTTCCAC-------------------------------------GTCAAAACTAGCTTTAC-------TTGTTTACGG-GACAATTGCTCTCTGTTG-------C
i caeJap4.Scaffold17934 C 0 I 29

a score=2122.000000
s ce10.chrX              4709661 29 + 17718866 AACCTTTTTTCTCTTT---------TTTCTTTCAGAT----------------------------T
s cb4.chrX              10048810 48 + 21540570 cgcttttttttgtttg--ttacCGCTCactcaaaaag---aaaact--t-----------ctgaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1626771 63 -  4500979 aaccttttttatttta-ttttccgctcactgtcaaagtttgaaact--cAACTCAACAAACTGCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    351426 54 +   386604 AGtccttttttttttt---------tcactgtcAAATATTGAAAC---CAACTCGGCACACAGAAT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2963668 66 +  4147112 tttcttctctttttttatattccgCTCACTGTCAAAGTTTAAAACTAACAACTCGACACATTGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934    94212 29 +   591668 I

a score=-38976.000000
s ce10.chrX              4709690 240 + 17718866 CTCATGTTTTTT--------------TGCA-----TTTGCTTTA--TTTTCAGat--aaaa-------------ttttttatttat-aatataattttta--------ttCAAATCAAAAT-ATGAAG---TTTTATCAGTTTTATCACTGTTTTTGGCGATATTGAGAAGACAAATACACATATT-GGCATA---TTCACAGTTGGAGTTTGGAA-TTTCTGATTGAAAATG------ATTTT-----TTAAAAATTATATAAGTCAAGGGAGTGGAGAA-----AGAAA-------------ACCGTTACACAAAAAAAAA---
s cb4.chrX              10048858 228 + 21540570 ctcaTATGGCATTTTGCTTGAACAA-Tgca-----atgaaataaaaaatttacatATAAAATTCTTTTTAG-CGTTTCTTATCAAC-ttagaaa---------------------agagaa-gaaaaatgtatttatcA----------CGGTTGTAGC--------GGTGGAATTAACACAT--------TA---TTCACAGTT-GCTGGTATGATTTTCTGTTTGATTATGGGGGGAGA-AT-----GTCGGGAATG---AGGGGGAAGACTGGGAGCATttatagaaa-----------------------gaaaaa------
i cb4.chrX              C 0 I 690
s caeRem4.Crem_Contig0   1626834 243 -  4500979 CTCA-ATAGTAT--------AAAAT-TGCATTCGCTTGAATTTGTCGATTCATA---AAAGTGTATTGTAt-tgtttcttatcaat-ttaACAATT------------cttcaatcaaaaa-gaaaa----atccaaCA----------CGGTTACGAC--------GATcgaaaacacacatttttggTATA---TTCACAGTTGGATGATATGA----AAGTTTGATTATGTAGAAGTATGT-----ATAGAGGttg---aaggagaaggaggagcACAATTATaaaaaa------------aCCGTTACTTAACAAA------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622    351480 255 +   386604 CTCAAAT----T--------TATAC-TGCA-----TTTGCTTTCACTTAtcatataaaaaa---atttcat-tgtttcttaTCAACATTAACAATT------------CTCCAGtcaaaaatgtgaag---aaaTATCA----------CGGTTGTTgcgat----gaaatgaaaatacaCATATTGGGCACA---TTCACAGTTGGAAGATG-AA----CATTTTGATTATG------TATGTGGTgggggggAATCG---ATGACTTAGGAATGGGGTTTTTGTTCAAtattctatcaaaaaaccgttatttgaaatacaa---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2963734 227 +  4147112 CTCAAATA--CT--------TATACATGCG-----TTTGATTTCACTTTTCacat--aaaa---atttcat-tgtttcttatcaat-ttaACAATT------------CTccagtcaaaaa-ataata---gagcAT------------------------------AAGAGAAAATACACATATTTGGCATA---CTCACAGTTGGAAGATGAAA----CGTTTTTGATAT-------TATTT-----TGGGGATTTC---AAGAGGTGGGAATGGGGgagcaatagaaaa---aattatagaaccgtta---aaaatagaa---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    94241 222 +   591668 cttatttattat--------tttaattgtg-----tttgttttcaaaaaacaaca--aaaa---attccgtattttatttgacaat-gtaacaaatttcaatttcaatttcaattccaaaa-atAGTA---TGTCGTAA----------ATAATGTATCGCC----------AAAGAATACAATTTTGGTAtagttttcaca----aaaaaaaaga-----------atcat-------catta-------------ta---aggaagaaggaaggaaagaaagaaagaag-----------------------gaaaaaaaacaa
i caeJap4.Scaffold17934 I 29 C 0

a score=-1956.000000
s ce10.chrX              4709930 170 + 17718866 TACAGCACACAAATATGGGAATCGAGGCGGGAAGGA---AAGAAAGAGCATGAGCAATAGGTTCGAATTTATTTTTAAAG----------TGAAATTAGTGTGAAATAAACTCATCAGTACCAATAATCGTAACA-------ACGGGGTAA--AG--------TGGGAAAGAGTGAAAACAAAATTTGTGTGCAAC-------GAAT
s caeRem4.Crem_Contig0   1627083 177 -  4500979 TACAGAACACAATTTGG-----------GGGAAGGGGGAGTGGTGAA--ATGAGCAA-ATGTTT------GGAATCAAAGTCTTCAAACAAGAAGGGAA-ATGATTTTGATTCATCAGTATTAACTATCGAAACAAT-----Attgggaagaaagaagaact-tGGAAGACA-TGCACTAATA--TTGTGTGGAATCGTAGGGGAAA
i caeRem4.Crem_Contig0  I 6 I 12
s caeSp111.Scaffold622    351735 163 +   386604 --aaattcacGCATAAGTAA--------TAGAAgac---tggaaaaa--atgagcaa-ataTC-------AGAATCAAAG----------AGAGAATAA-GTGAAATTGATTCATCAGTACCAACAATCGAAACAAACGGGGACGGAGGAG--AGAAGAATTATGGGATACA-TGCTTTGAAAACTTGTGTGGTGT-------GCAA
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0       2963961 169 +  4147112 --aacatcaCGTATCAAGAAA-----GTTGGAAGGCGGTTAGAAAAA--GTGAGcaa-atattcagatgaaaaattgaag----------tgaaaTTTA-G-GATATTGATTCATCAGTACCAacaatcggaaaaaa-----actgggaTG--TGGAGAATTATGGGATACA-TGCAATAGAAATTTGTGTGTTG--------GAAA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934    94463 136 +   591668 aacaaaacaccgacaggtaga-------aacaaaaa---taataaga--gtgagcaa-------------aaaTTACGAA----------TCATTTCAA-ATGACAT-------------------ATCGGAACAG------TTTTGGAAG--CGgttaaacaaaaaagaaa-aaaatagaaaaatcaaGTGAAGT-------GAAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10049086 690 + 21540570 I

a score=450349.000000
s ce10.chrX              4710100 667 + 17718866  
s cb4.chrX              10049776 665 + 21540570  
i cb4.chrX              I 690 C 0
s caeRem4.Crem_Contig0   1627272 621 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold622    351902 625 +   386604  
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0       2964135 670 +  4147112  
i caePb3.Scfld02_0      I 5 I 303
s caeJap4.Scaffold17934    94599 650 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-7704.000000
s ce10.chrX              4710767  4 + 17718866 --------AAAA--------------------------------------------------------------
s cb4.chrX              10050441  4 + 21540570 --------aaaa--------------------------------------------------------------
i cb4.chrX              C 0 I 263
s caeRem4.Crem_Contig0   1627893  4 -  4500979 --------AAAG--------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    352527  4 +   386604 --------ATAA--------------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    95249 74 +   591668 attttcgtaaaattaATTACCATTCAGACCATATGAATGCACTGGCAGTTATGcgaaatcacatttttttgaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I

a score=-5647.000000
s ce10.chrX              4710771 11 + 17718866 TTTAATTGTTT-------------------------------------------------------
s caeRem4.Crem_Contig0   1627897  6 -  4500979 -----GTATTT-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 166
s caeSp111.Scaffold622    352531 11 +   386604 TGAGGTTATTG-------------------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934    95323 66 +   591668 ttaaatttttcaggcaggccgcgacgcaaccgcaacgcgaggcgtcggcggcaaaaaaatgcgttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I

a score=691.000000
s ce10.chrX              4710782 4 + 17718866 CAAA
s caeSp111.Scaffold622    352542 4 +   386604 CTAA
i caeSp111.Scaffold622  C 0 I 300
s caeJap4.Scaffold17934    95389 4 +   591668 caaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeRem4.Crem_Contig0   1627903 166 -  4500979 I

a score=-554.000000
s ce10.chrX              4710786 272 + 17718866 AAAAA---------------------------CTATTGGT--------------------CTCTCCCTGAACTGTCAGTTTTCAATATCTA------GTTATCGTACCAAGTTATCGAACTTTTTAAAAGATTAGTATAGATTCAATAAAGGTGGCG----AAATTAAAGAATTTTGTAAT-----GACAGTTCACGAGAATTTCT-------------CAAAAACATTT----------ATGGGGCTTCAAAGTCTTGAAAAAAAA---------------------------TGGCTCAA-------------------------TTTTCGCCAATATCTCC-----------------------AGTCTCCAATGCCTTAAATAATATTTTTTGCGTGATttgatagtttatatcgcgtttttt-aatag
s caeJap4.Scaffold17934    95393 429 +   591668 aaaaggcAGCACAGGGATTCGTGAAGCTTTGTCTGTTGGTTCTCGGGGTTaaaaaaaGGTCTTTGTCgtgattttcagttttcaaaacctttaATTTGCTAATGGACCTACTcacaaaacctgaaaaaaaataattacacg---gaaaaaaattgcgggaaaaatcggagaatgctccgattgaccgacatattgtgaaaaatgcttcctgtacatgctcaaaaaaatttggaccaaaatatcgattttaaaaattttcagaaaaaaaatcgataatttttgaaatcgttattttggttcaaaaatttttgagcgtgtacaggagaattttttccaatatttcccaaaatttcaggtcaatcggagcattctccgatttttcccgcaatttttttttc-cgtttttttatttttcttccggttttgtgaatag
i caeJap4.Scaffold17934 C 0 I 243
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I
e caeRem4.Crem_Contig0   1627903 166 -  4500979 I

a score=0.000000
s ce10.chrX              4711058 213 + 17718866 ctaaagtacaaatcaagccattagtcaaccatgaatgatcaaaattggttacctaggctttaaatgtacttctatcgacgacataaggtaagacaagcaaccaaaatatgtaaagaaggctgataaacgctaatttttgaccgctgcaacacggaaaatggaccaaaaattggagaaattatcaaaaatgaaacattttttcgaaactttgaa
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e caeJap4.Scaffold17934    95822 243 +   591668 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I
e caeRem4.Crem_Contig0   1627903 166 -  4500979 I

a score=0.000000
s ce10.chrX              4711271 108 + 17718866 gcctca----------ttaaaaaatttcgagaagtcacattacgaaatttggtcatttgggtacattCGTCAAATTGTTCCAACAATTTTCACTTTTCAC---------AAAATTTACTCGATTTCG
s caeJap4.Scaffold17934    96065 113 +   591668 GTCTCACGCTCTCTGCTTGAAAAAT-----------GCattgcaaaaaatgtgaattcgcata-atttggcacatta--ccaatatttttttttctccgtttcaactttaattttcaatttattatt
i caeJap4.Scaffold17934 I 243 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I
e caeRem4.Crem_Contig0   1627903 166 -  4500979 I

a score=-1181.000000
s ce10.chrX              4711379 78 + 17718866 TTCGGAATGGACACACCCAATTTGTACAATTTTCAAGTCAG-AAGAAACC------ACAATTGATTAAATTTAACGATTATAATA
s caeRem4.Crem_Contig0   1628069 74 -  4500979 ttttgaaaaggcaCACCCAAACTATACATTGCCTCGAACAA-AAGAGG----------AATGAACAAAATGCAACGAATTCCATG
i caeRem4.Crem_Contig0  I 166 I 24
s caeJap4.Scaffold17934    96178 77 +   591668 ttttgtgtgtat-cataaaaatcttaaaattttcCCGTCAGCaagaaagtgagaaagaaagaaagaaaaagcagcgta-------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I

a score=346.000000
s ce10.chrX              4711457 20 + 17718866 AAAATAACTGCGTTACACTG
s caeJap4.Scaffold17934    96255 20 +   591668 aaaattgcaaattttaaCTG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I
e caeRem4.Crem_Contig0   1628143 24 -  4500979 I

a score=1092.000000
s ce10.chrX              4711477 4 + 17718866 ATAA
s caeRem4.Crem_Contig0   1628167 4 -  4500979 ATAA
i caeRem4.Crem_Contig0  I 24 C 0
s caeJap4.Scaffold17934    96275 4 +   591668 ATAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2964805 303 +  4147112 I
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I

a score=-2893.000000
s ce10.chrX              4711481 21 + 17718866 ------------CAATACTTCTTTATAGCAAGA
s caeRem4.Crem_Contig0   1628171 20 -  4500979 ------------TAATACTCCCT-AATGCCCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2965108 21 +  4147112 ------------CAGTATTCTTTCAATGAAACA
i caePb3.Scfld02_0      I 303 C 0
s caeJap4.Scaffold17934    96279 28 +   591668 CGATGGAATGTGTGATACGCCAGCCATT-----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10050445 263 + 21540570 I
e caeSp111.Scaffold622    352546 300 +   386604 I

a score=-8986.000000
s ce10.chrX              4711502 30 + 17718866 ATAGGAATTTAGAAAATGTATTTTCA-ACTC----
s cb4.chrX              10050708 25 + 21540570 -ATGAAAGTTTTCTAAACATATTTCA---------
i cb4.chrX              I 263 C 0
s caeRem4.Crem_Contig0   1628191 21 -  4500979 --TGGCATATTt---aacaaataaca---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2965129 27 +  4147112 CTTGTATTTTATAGGAACCTTTCTCAA--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    96307 30 +   591668 AGCGGaaactcaaaaagcaattcaaa-----attc
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    352546 300 +   386604 I

a score=66075.000000
s ce10.chrX              4711532  84 + 17718866 --------------AAAG---ACTCACTTTTTGATTTCGTCATCTGTGGCATTTTTCTGAATGCCGAGAACATTGTACAAATGAAGTCCCTTTTTCGGATC
s cb4.chrX              10050733  84 + 21540570 --------------AAAT---ACTCACTTTTTAATCTCATCCTCAGTGGCATTCTTTTTTATACCAAGCACATTGTACAAATGCGTCCCTTTTTTAGCATC
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   1628212  84 -  4500979 --------------aaat---actcactttttgatttcatcttcAGTGGCGTTCTTCTGTATGCCCAGTACATTATATAAATGGGTTCCTTTTTTAGCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    352846  81 +   386604 --------------AAAc---actcactttttgatttcatcatCGGTggcattctttttcaaaccaaGCACATTATACAAATGAAgtcctttctt---ttc
i caeSp111.Scaffold622  I 300 C 0
s caePb3.Scfld02_0       2965156  83 +  4147112 ---------------AAT---ACTTACTTTTTAATTTCATCATCGGTGGCACCTTTTTGTAAACCAAGAACATTATATAAGTGAAGACCTTTTTTAGCATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    96337 101 +   591668 aaaattcaaaaaaaaaatgtaaccCACTTTTTAATCTCATCATCCGTTGCGTTTTTCGGGACGCCTAGCACATTGTACAAATGAAGTCCTTTCTTCGCTTC
i caeJap4.Scaffold17934 C 0 C 0

a score=1449.000000
s ce10.chrX              4711616 34 + 17718866 GTGCGAATGATCAGCGGCT---GGAGATTCTTCACGG
s caeRem4.Crem_Contig0   1628296 27 -  4500979 ---CATATTTGCGGCTGCA---GGAGATTCTTC----
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold622    352927 30 +   386604 agttgGCGAATCAGGTGTT---GGTGATGCTTC----
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2965239 34 +  4147112 AGGCGTTGCTGCAGGCGCG---GGTGACCCTTCGGGT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934    96438 37 +   591668 GTTCGGATTGGCAGCCGCTGGCGGAGAGTCTTCACGA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10050817 34 + 21540570 I

a score=236988.000000
s ce10.chrX              4711650 800 + 17718866  
s cb4.chrX              10050851 843 + 21540570  
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   1628327 805 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    352958 755 +   386604  
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0       2965276 766 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934    96475 816 +   591668  
i caeJap4.Scaffold17934 C 0 I 113

a score=-6468.000000
s ce10.chrX              4712450  4 + 17718866 TTTA--------------
s cb4.chrX              10051694 15 + 21540570 ATTGTCGCTGA---CTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1629132 18 -  4500979 TTCCACGCGAAAATCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    353713  5 +   386604 tttat-------------
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0       2966042  5 +  4147112 attga-------------
i caePb3.Scfld02_0      C 0 I 150
e caeJap4.Scaffold17934    97291 113 +   591668 I

a score=-16727.000000
s ce10.chrX              4712454 107 + 17718866 ----------------AACTTTTCTAGTAGTTATTATCAAAATGATAGAAAATAGAATGTTATAAAATAATGATGT--AAGA---TTATTTTAAAGAAACTGAATTGATTATTTTCGCTAAAAAATTG
s cb4.chrX              10051709  65 + 21540570 ---AG---------GAAAATTTC-----------TGTTGGAATTC--------GGAAAGCT------------CGTcctgaa--------------aaatcctaaaaat------ggCCAGAAAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1629150 121 -  4500979 ---AAACTCTGCCCGAAAATCTC---GAATCTCGTACTGAAATTCTATTGCATAGCAAGTTTTGTTTCTCTTACGTCCATGATgcaaattttgttcaaatcgTACTACTT-TTTCGGTTAGGAAAGTA
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold622    353728  72 +   386604 aaaag---------tgaagtttt-----------tctcaaaaact----------gaatttctatatttgttttttcaaaga---------------------actgCTT-TCTTGAGTAGTTG----
i caeSp111.Scaffold622  I 10 C 0
e caePb3.Scfld02_0       2966047 150 +  4147112 I
e caeJap4.Scaffold17934    97291 113 +   591668 I

a score=-2381.000000
s ce10.chrX              4712561 30 + 17718866 AGCCAATTTATTATTCTTTCTCTGAACTCT--------------
s cb4.chrX              10051774 43 + 21540570 -AGTTATCGAGCATTTTCTGCTTCTTTTCTTCCCTTGTTGCCCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    353800 19 +   386604 AAGCAGTGAAATGCTTTCT-------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2966047 150 +  4147112 I
e caeJap4.Scaffold17934    97291 113 +   591668 I
e caeRem4.Crem_Contig0   1629271 25 -  4500979 I

a score=-4413.000000
s ce10.chrX              4712591 12 + 17718866 -----------------GCAAAAGATGTT---
s cb4.chrX              10051817 27 + 21540570 GAAAGAGCATGGAAACAAGCAAAGATG-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    353819  2 +   386604 ------------------------------TC
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2966197 15 +  4147112 -----------------GGAGAAGACGTTGTA
i caePb3.Scfld02_0      I 150 C 0
e caeJap4.Scaffold17934    97291 113 +   591668 I
e caeRem4.Crem_Contig0   1629271 25 -  4500979 I

a score=1873217.000000
s ce10.chrX              4712603 2711 + 17718866  
s cb4.chrX              10051844 2821 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1629296 2633 -  4500979  
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold622    353821 2759 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2966212 2755 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934    97404 2822 +   591668  
i caeJap4.Scaffold17934 I 113 I 17

a score=-11022.000000
s ce10.chrX              4715314 37 + 17718866 CAGTCCAATTAA-----AAGAACTATTTAAAAAGTTGAATGA
s cb4.chrX              10054665 34 + 21540570 TAGACCTTCTAGGCTCGCTGAGCTCCTTTGTA--------CG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1631929 32 -  4500979 CAGCAGATTGATAATAGCATATCAATGTTGGA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    356580 19 +   386604 -----------------------TATTCCAGAATTGATTTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2968967 19 +  4147112 CA---------------CATACCAACTCCAAA--------AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100226 17 +   591668 I

a score=403798.000000
s ce10.chrX              4715351 419 + 17718866 ----TTTTAATTATCGAT-------TTTCAGTTTCCCACGCAAGTCTGCCCCAAAGACCTCCAAGATGGACCACTTCCGCATCATCCAACACCCATTGACCACTGAGTCCGCCATGAAGAAGATCGAGGAGCACAACACCCTTGTCTTCATCGTCAGCAACGACGCCAACAAGTACCAAATCAAGGACGCCGTCCACAAGCTCTACAACGTCCAAGCCCTCAAGGTTTGTTGGAAGCATCTTAATTTCCAGGCAAAAAGAAATCAAAATGC--------TTGTTTTTAGGTCAACACCCTCATCACTCCACTTCAACAGAAGAAGGCTTACGTCCGCCTCACCGCTGACTACGATGCTCTCGACGTTGCCAACAAGATT-GGAGTTATCTAAA-TTGTTTT-----CTTGTT-CCTTGTTTGTTCAATAAACAATTTGTTATTAAA
s cb4.chrX              10054699 417 + 21540570 ----GTTTATTCAATCAT-TCAATATTTTAGTTTCCCACGCAAGTCGGCTCCAAAGGCCTCCAAGATGGACCACTACCGCATCATCCAACACCCATTGACGACTGAGTCGGCCATGAAGAAGATCGAAGAGCACAACACTCTTGTCTTCATCGTCAACAACGACGCCAACAAGTACCAGATCAAGGATGCCGTCCACAAGCTCTATAACGTCCAGGCCCTCAAGGTTTGTGG--------TCAAATGC--------AAAATACTGGAATAC-AAAAATGTCACTTTCAGGTCAACACTCTCATCACCCCACTCCAACAGAAGAAGGCCTACGTCCGCCTCACCGCTGACTACGATGCCCTCGACGTCGCCAACAAGATT-GGAGTCATCTAAATTTGTTGC-----CTTGTT-CGTTGTTTGTTCAATAAACACTTTgttataaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1631961 411 -  4500979 -------taacaaataat-------tttcagcttcccaCGCAAGTCTGCCCCAAAGACATCCAAGATGGACCACTTCCGCGTCATCCAACACCCATTGACCACTGAGTCGGCCATGAAGAAAATCGAGGAGCACAACACCCTTGTCTTCATCGTCAGCAACGACGCCAACAAGTACCAGATCAAGGACGCCGTCCACAAGCTGTACAACGTTCAGGCCCTCAAGGTTAGTGGAA------TGAATTGC--------AGACAACTGGAATACTAAACGTGTCATTTACAGGTCAACACCCTCATCACTCCACTCCAACAAAAGAAGGCCTACGTCCGCCTTACCGCTGACTACGATGCTCTCGACGTTGCCAACAAGATTGGGAGTCATCTAAA-TTGTTGT-----TTTGCT-CGTTGTTTGATCAATAAACAATCTGTTATGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    356599 418 +   386604 ----TCCTAATCA------TTCATATTTCAGTTTCCCACGCAAGGCTGCCCCAAAGGCCTCGAAGATGGACCACTACCGCGTCATCCAACACCCATTGACCACTGAATCGGCCATGAAGAAGATCGAGGAGCACAACACCCTTGTCTTCATTGTTAACAACGACGCCAACAAGTACCAAATCAAGGATGCCGTCCACAAGCTCTACAATGTCCAGGCTCTCAAGGTTTGTTGAA------TAGAACTTCAG-----ATATGgttcagaatctgaaaatataatttacAGATCAACACTCTGATCACTCCACTCCAACAGAAGAAGGCCTACGTCCGCCTCACCGCTGACTACGATGCCCTCGACGTCGCCAACAAGATC-GGAGTCATCTAAATTTGTTCA-----CTTGTT-CGTTGTTTGATCAATAAACAaattgttatcaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2968986 429 +  4147112 ----CCGTAACTAATTGGTTTTATTTTACAGTTTCCCACGCAAGTCTGCTCCAAAGGCCACCAAGATGGACCACTTCCGCGTCATCCAACACCCATTGACCACTGAGTCCGCCATGAAGAAGATCGAGGAGCACAACACCCTTGTCTTCATTGTCAACAATGACGCCAACAAGTTCCAGATCAAGGACGCCGTCCACAAGCTCTACAACGTCCAGGCACTCAAGGTTCGTTCGA------aggattttttgttagaaaatgaCTGATATACTGAGCATGTCATTTGCAGGTCAACACTCTCATCACCCCACTCCAACAGAAGAAGGCCTACGTCCGTCTCACCGCTGACTATGATGCCCTCGACGTTGCCAACAAGATC-GGAGTCATCtaaa-ttgtttt-----cttgttaCGTTGTTTGATCAATAAACAATCTGTTATGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   100243 415 +   591668 ttttgattatcGAATTGT-------TTCCAGCTTCCCACGCAAGTCTGCCCCAGCCACCCCAAAGATGGACCACTTCCGCGTCATCCAGCACCCACTCACCACTGAGTCGGCCATGAAGAAGATTGAGGAGCACAACACTCTTGTCTTCATTGTCAACAACGAGGCCAACAAGTACCAGATTAAGGACGCTGTCCACAAGCTCTACAACGTCAAGGCCTTGAAGGTTTGTTTAA------TGATTCG---------GAGATGTCGATAT------CATATTGTTTTCAGGTTAACACCCTCATCACCCCACTCCAGCAGAAGAAGGCCTACGTCCGCCTCACCGCTGACTACGACGCTCTTGACGTCGCCAACAAGATT-GGAGTCATCTAAA-TTGTTTTGCTTGATTGTT-CTTTGTTTGGTCAATAAACAAAATGTTAttgaa
i caeJap4.Scaffold17934 I 17 I 7625

a score=54.000000
s ce10.chrX              4715770 1 + 17718866 A
s cb4.chrX              10055116 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1632372 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 300
s caeSp111.Scaffold622    357017 1 +   386604 a
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2969415 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I

a score=546.000000
s ce10.chrX              4715771 1 + 17718866 A
s cb4.chrX              10055117 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    357018 1 +   386604 a
i caeSp111.Scaffold622  C 0 I 100
s caePb3.Scfld02_0       2969416 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=273.000000
s ce10.chrX              4715772 1 + 17718866 T
s cb4.chrX              10055118 1 + 21540570 t
i cb4.chrX              C 0 I 437
s caePb3.Scfld02_0       2969417 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e caeSp111.Scaffold622    357019 100 +   386604 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=151.000000
s ce10.chrX              4715773 3 + 17718866 GTT
s caePb3.Scfld02_0       2969418 3 +  4147112 ATT
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e cb4.chrX              10055119 437 + 21540570 I
e caeSp111.Scaffold622    357019 100 +   386604 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=0.000000
s ce10.chrX              4715776 539 + 17718866  
e caePb3.Scfld02_0       2969421  31 +  4147112 I
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e cb4.chrX              10055119 437 + 21540570 I
e caeSp111.Scaffold622    357019 100 +   386604 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=-31.000000
s ce10.chrX              4716315 1 + 17718866 C
s caePb3.Scfld02_0       2969452 1 +  4147112 T
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e cb4.chrX              10055119 437 + 21540570 I
e caeSp111.Scaffold622    357019 100 +   386604 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=-4585.000000
s ce10.chrX              4716316 201 + 17718866 TGCAACTGGTTATTCA-------------TTCATACATTAAAATAAATATTGAGAGATCAAGAGTAATGCG------------AAAAATTTCGAAAAAAAACATGATATCTGGCAAAAACGTGTTTGAGATCAAAAGTTATTAACCAGAAGTGATTGAAAAAG----------ATAATGGATGAAAGGAG-------------------------------TTTGCATGAAA---ACAATTTTCTGCAAT-------A--------TTAC----------------------TACAAGTTTTCACAA
s caeSp111.Scaffold622    357119 250 +   386604 TGAAACTGGTAATTCAAGTCATATGGAGCTTCATTCAAAGAATTAATGTTTG-GAGAGTACGAGCAATATAAagacaaaaagcaaaaat-----acaGCAAAATataagat----------tttttgagatcaaATATCAATGACGAGATA------ACAAAT----------ATATTGAATTAAAAGAA-------GCAGTTT----------TGTTAGCTCTGCA--------CCATTTACTTGGTATCAAACATAAAAACCGTCTAACGCTCGGaaaaaaaCCGTTGACTATGTCTACTTGGAA
i caeSp111.Scaffold622  I 100 C 0
s caePb3.Scfld02_0       2969453 235 +  4147112 -------TGCGGCTCGGTTTATTCGTGATTTCTTTCAGAATAATAAAAGCTG-GAGG--------------------------AAAAAT-----AAAGCGAAGTGATAGCT------AACATTTTTGAGATCAGAAATCGAAGACGAGATAGGTGAGAGGAATGAAAAAGCGAAGAATGAAGCAGGAGAATAAAGCTactgtttcatagaaaaatgtta--tatACAGAAACcgtctaattttttgaaattaag---aaaaaccgTGGAC----------------------TACATCTATTCAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e cb4.chrX              10055119 437 + 21540570 I
e caeRem4.Crem_Contig0   1632373 300 -  4500979 I

a score=-2869.000000
s ce10.chrX              4716517 35 + 17718866 ----TTCTAACCGGAA-----GATGA----AATTAAATTA-C--TGTTCTC
s caeRem4.Crem_Contig0   1632673 35 -  4500979 ----TTCTAACCGGGATTTTGATACA----AATGAATTTA-CAA-------
i caeRem4.Crem_Contig0  I 300 I 1
s caeSp111.Scaffold622    357369 37 +   386604 TTGTATCTAACCGGgt-tttgcttca----aaaaatgtgatt---------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2969688 41 +  4147112 TTGTATCTAACCGGGGAAATTCATCaggggaaaaaaatta-t---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e cb4.chrX              10055119 437 + 21540570 I

a score=505.000000
s ce10.chrX              4716552 6 + 17718866 AGGACA
s cb4.chrX              10055556 6 + 21540570 aaaata
i cb4.chrX              I 437 C 0
s caeRem4.Crem_Contig0   1632709 6 -  4500979 AGAATC
i caeRem4.Crem_Contig0  I 1 C 0
e caePb3.Scfld02_0       2969729 0 +  4147112 C
e caeJap4.Scaffold17934   100658 7625 +   591668 I
e caeSp111.Scaffold622    357406 0 +   386604 C

a score=75975.000000
s ce10.chrX              4716558 81 + 17718866 G----TTACTCGGTGTATGGCGGTGGGGGATCACGCATCAGTGCAATAATTAGATCTTCTTCGTGATTTGTTCGTGGTCTGAAA-A-
s cb4.chrX              10055562 81 + 21540570 a----ttattcgGTGTATGGCGGTGGTGGGTCACGCATCAGAGCAATGATCAAGTCTTCTTCGTGGTTCGTACGTGGTCTGAAAA--
i cb4.chrX              C 0 I 362
s caeRem4.Crem_Contig0   1632715 84 -  4500979 AGTTTTCACTCTGTATATGGCGGTGGTGGGTCACGCATCAGAGCAATAATCAGATCTTCTTCATGGTTAGTACGTGGTCTGAAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    357406 79 +   386604 -----ttatTCAGTGTATGGCGGTGGTGGGTCACGCATCAAAGCAATGATCAAATCTTCTTCATGATTCGTGCGGggtctgaaa---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2969729 79 +  4147112 -----ttattcggTGTATGGCGGTGGTGGGTCACGCATCAAGGCGATGATCAGGTCTTCTTCATGATTGGTTCTGGTCCTGGAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   108283 81 +   591668 ----gtTATTCGGTGTACGGCGGTGGAGGGTCACGCATCAGAGCAATAATTAAGTCCTCTTCGTGGTTGGTACGTGGTCTGAAA--T
i caeJap4.Scaffold17934 I 7625 C 0

a score=-7969.000000
s ce10.chrX              4716639 26 + 17718866 ----------------------------ATAAATAAT--AAACATCTGAAATA--------TTC
s caeRem4.Crem_Contig0   1632799 21 -  4500979 ---------------------------------TAAG--AGATGggtaaaatg--------ttt
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    357485 28 +   386604 ----------------------------------aat--atgattatAAATTGACTTGACCTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2969808 21 +  4147112 ---------------------------------TTTT--ATAATTCTGAtgtg--------ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   108364 56 +   591668 GTGAAATTGCAGTAATTTCCTAGTGCGAACGGTTAATccaaagtgcaaaaaaa--------ttt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10055643 362 + 21540570 I

a score=208434.000000
s ce10.chrX              4716665 323 + 17718866 ACAG-----GTATTTTTACCTTTTATTTCGCATTATTATTCTGGAAAGACTTCGTTCTAACTGTCTATCTCGGATCACAGCTATCAATGGATTTGCGACACAATGAACAGAGAATGCCGCAACTTCAATCCCCATAATTGAGTTATACTGGTCCTGAAGTTGTGTTCCAATTTTGTAATCTA-------ACAATAACATGA--------TTA--TTTACCTTTTCCTTGGACTCCCAGGCAACCATCATAAAAATTATAATAAATGATAAACTATTCAACAGCAACCATAGTGACGCTGTTGCGCAGTCCTTCTTTAACCGTACTGTTTGACTATTTTCCTACAA
s cb4.chrX              10056005 323 + 21540570 ACAGGCA--TTTTACTTACCGTTTATTTCTCATTATAATTCTAGAGAGACTCCTTTCTAGCTGCCTGTCTCTTATGACTGCTATCAATGGATTCGCAACACAGTGCACGGAAAATGCGGCAACTTCGATACCCATGATAGAGTTGT-TTTGTCCTGAAACA------CAATGATTTGATAAAA-----TGTAAGAATTTCA-----ATGTT---CCCACCTTTTCTTTCGACTCCCATGCCACCATCATGAAAATGATAATGAAGGACAAACTGTTGAGAAGCAACCAGAGTGACGCTGTCGCACAATCCTTTTTCAACCGAACCGTATGACTGTTCTCCTGCAA
i cb4.chrX              I 362 I 35
s caeRem4.Crem_Contig0   1632823 322 -  4500979 acgGAAT--AATTTCTTACCTTTTGTTTCTCATTATAATTCTTGAGAGACTCCGTTCAAGTTGTCTGTCTCGTATAACTGCTATCAAAGGATTTGCAACACAATGGACTGAAAACGCAGCAACTTCGATACCCATTATGGAATTGTATTGGTCCTTAAAAAGT----TATTGAATTGattga------------aacttta-----tttttaagcAAACCTTTTCTTTTGACTCCCATGCAACCATCATGAAAATGATAATGAAGGATAAGCTGTTTAACAATAACCAAAGTGACGCTGTTGCGcaatctttttttaatctaattGTTTGACTGTTTTCttgcaa
i caeRem4.Crem_Contig0  I 3 I 40
s caeSp111.Scaffold622    357513 319 +   386604 TCAT--------GCACCACCTTTTATTTCTCATTATAATTCTTGAAAGACTCCGTTCCAGTTGCCTATCTCGTATCACTGCGATCAACGGATTCGCTACACAATGCACGGAAAAAGCCGCCACTTCGATGCCCATTATTGAATTGTACTGGTCCTGCAAT-------CATTCTTTTGC--AG-------TCAAGAACTTTTCGCTGTTTTGT--TTTACCTTTTCTTTAGACTCCCATGCAACCATCATGAATATGATAATGAATGACAAACTGTTTAGTAACAACCATAGAGAAGCTGTTGcacaatcttttttcaatcgtACAGTTTGACTGTTTTCCTGTAA
i caeSp111.Scaffold622  C 0 I 35
s caePb3.Scfld02_0       2969829 325 +  4147112 tcagaat--ataGGTTTACCTTTTATTCCTCATTATGATTCTTGAAAGACTCCGTTCAAGTTGTCTATCACGTATGACGGCGATTAATGGATTGGCGACACAGTGAACAGAAAACGCCGCAACTTCAATACCCATTATTGAGTTGTACTGatcctgaa---------tattttttcgttgaG-------AAAATAACTCGAAAAGGGTGTCA--GCTACCTTTTCTTTAGATTCCCAAGCTACCATCatgaaaatgattatgaaTGACAAACTATTTAGGAGGAGCCATAATGATGCCGTCGcacaatcttttttcaatcgtATTGTTTGACTGTTTTCCTGTAA
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold17934   108420 312 +   591668 -----atgaatatATGTACCGTTTATTTCTCATTATTATTCGAGAAACACTCCTTTCAAGTTGTCTGTCGCGAATCACAGCTATCAACGGATTGGCGACACAATGAACCGAAAACGCAGCTACCTCTATTCCCATGATAGAGTTATACTGTTCCTGGAATTGT----TATTGGCTTGTTATGcgtttttctaataatt----------------atcACCTTCTCTTTGCTTTCCCATGCGACCATCATAAAGATGATGATAAATGAAAGACTGTTGAGGAGCAACCATAAAGAAGCAGTGGCACAGTCCTTCATAAGACGAGCCGTTTGACTGTTG--------
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4716988 28 + 17718866 AAATTTCAATACTCAAATGCAATTTTTC
e caePb3.Scfld02_0       2970154 35 +  4147112 I
e caeJap4.Scaffold17934   108732  0 +   591668 C
e cb4.chrX              10056328 35 + 21540570 I
e caeSp111.Scaffold622    357832 35 +   386604 I
e caeRem4.Crem_Contig0   1633145 40 -  4500979 I

a score=69904.000000
s ce10.chrX              4717016 90 + 17718866 GATCCCTTACCTCTGGATTAAGACGTTGTGATATGATTAGCTGGATGAGATTGAGCGGATGAATAATCAAATTGAGCACAAGGAATACGG
s cb4.chrX              10056363 90 + 21540570 TAATTCTTACCTCGGGATTTAATCTTTGTGAAATTATCAGTTGGATCAAATTGAGCGGATGGATAATCAGATTAAGCACGAGAAAGACTG
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1633185 90 -  4500979 CTTCACTCACCTCAGGACTCAGTCTTTGAGAAATGATGAGTTGGATTAAGTTAAGAGGGTGAATAATCAAATTGAGTACGAGGAAGACGG
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold622    357867 90 +   386604 CTCTTACTACTTCGGGATTCAATCGCTGAGATATAATAAGTTGAATCAAATTGAGTGGGTGTATAATTAGATTGAGCACTAGGAAAACGG
i caeSp111.Scaffold622  I 35 I 2
s caePb3.Scfld02_0       2970189 90 +  4147112 CCCTCACCACTTCAGGACTCAATCTTTGCGATATGATGAGCTGGATGAGATTGAGAGGATGAATAATCAAAttgagaacaagaaaaacgg
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold17934   108732 82 +   591668 --------ACTTCTGGACTAAGACGTTGAGCAATGATAAGTTGAATTAGATTGAGCGGGTGGATAATCAGGTTGAGGACAAGAAAGACGG
i caeJap4.Scaffold17934 C 0 C 0

a score=1000.000000
s ce10.chrX              4717106 2 + 17718866 AT
s cb4.chrX              10056453 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1633275 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2970279 2 +  4147112 aT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   108814 2 +   591668 AG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    357957 2 +   386604 I

a score=110798.000000
s ce10.chrX              4717108 137 + 17718866 AGAAGAGCAAGATGAAAAGGCACTGCTAACACAAAAGATCTCGAGAGGCGGATTAGGAAAAAGTCGGATAGAAGCAGTAACGTTACGAGAAGCCATGTTGAGCCGATTAATCGAGATAATTGAGACCTGGAA---------------ATGTG
s cb4.chrX              10056455 137 + 21540570 AGGAGAGCGAGGTGGAATGGAACGGCTAAGACGAAAGAGCGGGATAGACGGATTAGGAAGAAGTCGGATAACAGTAGCAACGTCACGAGAAGCCAAGTTGAACCGATCAGACGGGACAGTTGCGATCTGTAA---------------ATTTG
i cb4.chrX              C 0 I 854
s caeRem4.Crem_Contig0   1633277 137 -  4500979 AGGAGTGCAAGATGAAAAGGTACTGCTAACACAAAGGACCGAGAAAGACGGATTAAGAAGAAGTCGGATAGAAGAAGTAACGTCACCAAGAGCCATGTTGATCCGATAAGACGGGATAGTTGAGATCTGAAT---------------GTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    357959 132 +   386604 AAGAGGGCAAGATGAAACGGCACTGCTAAGACGAATGATCGAGAAAGACGgattaaaaagaaatccgACAGCAGAAGTAATGTTACTAAAAGCCAAGTTGATCCGATCAACCGAGATAGTTGTGATCTGTAA--------------------
i caeSp111.Scaffold622  I 2 C 0
s caePb3.Scfld02_0       2970281 147 +  4147112 AGAAGTGCGAGATGAAAAGGCACTGCTAAGACAAAAGACCGTGAGAGACGGATTAGGAAAAAATCGGATAAAAGTAGTAGCGTCACCAGGAGCCATGTTGATCCGATAAGACGGGATAGTTGTGATCTGAAAAGAATGATAAGAATC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   108816 137 +   591668 AGTAGAGCAAGATGAAATGGTACAGCGAGGACGAAAGATCGCGAAAGACGGATGAGGAAAAAGTCGGAGAGGAGCAAGAGAGTTACAAGGAGCCATGTTGAGCCGATTAGTCGTGAGAGTTGAGATCTGAAA---------------GTTTA
i caeJap4.Scaffold17934 C 0 C 0

a score=148.000000
s ce10.chrX              4717245 4 + 17718866 TCGA
s caePb3.Scfld02_0       2970428 4 +  4147112 TGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   108953 4 +   591668 TTTA
i caeJap4.Scaffold17934 C 0 I 130
e cb4.chrX              10056592 854 + 21540570 I
e caeSp111.Scaffold622    358091 0 +   386604 C
e caeRem4.Crem_Contig0   1633414 0 -  4500979 C

a score=-4667.000000
s ce10.chrX              4717249 73 + 17718866 TGG----GATAATAAATTAGAAATGTATAATAACAGTGAAATT-----CAGTT---AATTCAAAGTACT---------AATTTTAGTTTCAAAA
s caeRem4.Crem_Contig0   1633414 80 -  4500979 -------TGTTTTGAATAAGAATCATCTTGAAGGATAGAATATGGTCACACTA-CATACATATAATTCTTTTCTACTCAAGTACAATA------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2970432 77 +  4147112 TGAAGTTTGTTGT---TGAAAATGGTGTAGGCGGAGAGATTGT-----TACTAGGAAAGATAAAATACT---------AAATGTCGTATGGATA
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17934   108957 130 +   591668 I
e cb4.chrX              10056592 854 + 21540570 I
e caeSp111.Scaffold622    358091  0 +   386604 C

a score=-236.000000
s ce10.chrX              4717322 30 + 17718866 TTTTGAA--ACATTTCTTGGTTTTGAGGaatt
s caeRem4.Crem_Contig0   1633494 27 -  4500979 CGttgaatatcaatttttaattttaag-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358091 21 +   386604 ---TGAAgcataattttttatatt--------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2970509 12 +  4147112 I
e caeJap4.Scaffold17934   108957 130 +   591668 I
e cb4.chrX              10056592 854 + 21540570 I

a score=-1558.000000
s ce10.chrX              4717352 35 + 17718866 attttaaaaaataatcacaaat-taaatatttCTAA
s caeRem4.Crem_Contig0   1633521 25 -  4500979 ----------atttttgaaact-tgcaCTTTTCTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358112 26 +   386604 ----------attttttgtatggTGCATTTTTCACA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2970521 36 +  4147112 attcataaaaatcgtAGGAGTTGAACAGCTTtgaga
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17934   108957 130 +   591668 I
e cb4.chrX              10056592 854 + 21540570 I

a score=-82191.000000
s ce10.chrX              4717387 434 + 17718866 GAC-TGAGAAACAATGTCTTTATTTATGTTTTATACTTATTTTCGA--GTTTTTCGAATACTTTCAATTTCTCTCATAAAAATGGTATTTAAGTATTTATTAGTTGAAAAATGTTACACTTAAGCGAGCTCGTCTATTTTTTCAATG---AACTGTTTTTTTTTC------------AGTTAACAAGGCTCTGCGGTAACCGGCATTTTGTCGTAATTTCAAA-AGTTACTATACTTTAATTGAAAGAATGTCGATAGCCGACTTCTGAAAATG-CCAATTGCCAAAAACTTCCAGCATCTAAATAGTGAATTTAAGTCTAC-TTACTTTGCGTTA-----TTTTTTAAATTTGCACAAAAAAGTATTTGAATAATAAAATGACACTGAAGTCTGCCATATTAAAAAATTATTGTTCTGGTTATTCCAAACCAAGTTTTTTTGGTCAAGTTTTGGTGTAT--------
s caeRem4.Crem_Contig0   1633546 254 -  4500979 GGC----------------------------TCAACtaatttttct-ctcacttttaaaacca--aattatGCTCCCAGAACCAAGATATTATTTATGCCCATAT-ACAGATGTTACActtgaataa-----------ttttcattg----------TATTTGAT------------GAATGAAAAG-------AGCAA------------------TTGAAC-TGtgacaaaacttt-------tgaatgt--------gAGCTTTCTTCCTT-------------ATTTGCCTCAAATA----------TCTTTTATTTC-----TATTCCTTA--------------------------AGTTcttggaaactgaaaagac-------TCTATCAACTTGAGAAGCAGCTTCCCTTAT-----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358138 239 +   386604 AGT--GCAAAACTGGA---------------TGGTtcgattttaaa--tttctatAAAAG-----AATTAGAAAGC-----------------TGA------------AGATGTCACACTCGACTAA-----------CTTTCATTA----------CACTTGGC------------AATTGAAAAG-------AGCAA------------------TTGAAC-TGTGACAA--------------AGCTATTG------AACTTCTCatcatt---------------------ctgttt----------ttttagttttc-tcaaTATCCCTTA-----TTAATTCAATGTAT---GTAGAGTTCTtggaaactaaaaaa----------ctattaaCTTGAGGAGCggcttttcttgt-----------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2970557 295 +  4147112 aatccgaaaaattatG---------------TCGAACAATATGAGGCCTTATTATGAATACTGTTAATTGGACACCT----------TCTCAGTGATCTTCAATT---AGATTCCACAAGCACTTCA-----------TTTCTAATA-------GCTAACTTTGA------------AGTTAGCGTG-------TGTAAT---GATTTTG-CTTATTTTGTTCTTGTCACAACAA----------TAATTAT--------AACTTATATTCACTGCAAGTGAATGAAAATCGCCAgtactt----------ttttggttttcgttgAAATGACTGA------TAGTCAAATTCAT--CATACTGCAATAGAAAACTATTCCA----------CTTTT---TCACGTAGCAG--------AT-----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   109087 316 +   591668 GAC-TGAACCGTGACG---------------ATGAGCTAATTTAAT--TTACagtaaaaa-tatgaatttgagcCATAGGAAAAA----TTATTAGTCTGCATCT---GACTGTTACTTATA----------------TTTTTAATACCAATGTATTTACTTTTTCAGAATCTgccaaagtgaaaaa-------aaaaa------acttgtggcAATCtgaag-gctaatag-------------ccgttttcgattgCTAACTTCCGTTTGAG----------------CGCCGATGGCCCACTAGGAACCTTTTGATAGA-TAattatggctctgggacgtttcgaaacctgc---------cctTTCggaactgggacg------------------tttcgaaacttttttgcattt---------------------------------------ttgcgtat
i caeJap4.Scaffold17934 I 130 I 52
e cb4.chrX              10056592 854 + 21540570 I

a score=-7207.000000
s ce10.chrX              4717821 63 + 17718866 CTGATTAATGAAATGTGACAAAGATTTGCATATGCCCAATTTATTTTGAGTCACCTTCCCTAC
s caeRem4.Crem_Contig0   1633800 15 -  4500979 ------------------------TTTGCATCT----AACTCC--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358377 20 +   386604 ------------------------tttccccTT------TTCCTGTTC---CA----------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2970852 31 +  4147112 ------------------------GTTACACTTGAATAATTCTTGTTG---CACTTGA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   109403 52 +   591668 I
e cb4.chrX              10056592 854 + 21540570 I

a score=-23559.000000
s ce10.chrX              4717884  81 + 17718866 TTTTGATAAGAAA------------------------------------------------ATTTTATTTTTTGAGCG--TAGTATTT----ATCAAT--------GCATATAATT-----TTCAAAATGTAACAAAAAAAATACTAT
s caeRem4.Crem_Contig0   1633815  65 -  4500979 --------------------------------------------------------GTCTAGTTCCTCTTCTTAAGAG--TCGTGTTC----ATTAGT--------AAAAACCCtt---ggctgaaaac----------aaaaacgtt
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold622    358397  32 +   386604 --------GAAAG-------------------------------------------------------------------CCATGTTC----ATTAGT--------GAAATT-----------------------------TCCCCCT
i caeSp111.Scaffold622  C 0 I 3
s caePb3.Scfld02_0       2970883 116 +  4147112 --TGAATGAAAAGAGCAATCGAACTGTgactaaaacttttgaatacaGCGAATGTGGTTTTATTCCGCTTCCC-------CCTTGTTCTAATATTCAT--------AGTATCCTTT-----TTCACAAT----------AATTCCCTT
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold17934   109455  96 +   591668 tttttatcagaaa------------------------------------------------tttttatttttttgggagtTTCAgttc----actagtatgccgccaaaattcaaaaaagtttcgaaacgtcccagagccataatTAT
i caeJap4.Scaffold17934 I 52 C 0
e cb4.chrX              10056592 854 + 21540570 I

a score=-10083.000000
s ce10.chrX              4717965 43 + 17718866 ATAA-------------------------------------------CTGTGCTAAAGAATAGTAATTAGTTG--------ACCCCTTGACTAA
s caeSp111.Scaffold622    358432  5 +   386604 -----------------------------------------------------------------------------------------gctga
i caeSp111.Scaffold622  I 3 C 0
s caePb3.Scfld02_0       2971035 91 +  4147112 CTCGAGAAGCAGctttccttgttttctctcGATTCCCCATCTAGTTCCTGTTCTAGAAAGCCGTGTTCATTAGTGAAA---CCCTCttaactaa
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold17934   109551 19 +   591668 ---------------------------------------------------------------------------ACATTGCCCCGTTGTCTCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10056592 854 + 21540570 I
e caeRem4.Crem_Contig0   1633880 26 -  4500979 I

a score=-6975.000000
s ce10.chrX              4718008 35 + 17718866 -ACA-ACAAGAGAAGGGAAGGAATCTTTTATGTAACA
s caeRem4.Crem_Contig0   1633906 16 -  4500979 -ACAAACACAGAAAACC--------------------
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold622    358437 30 +   386604 -----aaacaaaaagcgttttt--ctttctttcaaca
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0       2971126 32 +  4147112 -----aaacaaaaaacgttttttcttttctttcaaca
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17934   109570 27 +   591668 TACAGAAGTGAAGAAAGCATAAAAACT----------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10056592 854 + 21540570 I

a score=89147.000000
s ce10.chrX              4718043 144 + 17718866 -------AACAAGGAAAGTTTCATGTTTCTTTTTGGAAAACTTTTT------------AGCGTGGACGACGA-CGGGCACTAATGAAAATCTCGAGAGACTCTTTTATGTGACGCATACATGGGAAACATGTATGTGATGTGACATTCGGTGCATTTG---------CCCTTT
s cb4.chrX              10057446 131 + 21540570 -------AGCTAAAAAAGTTTCATGTTGCTCCTC-----TTCTT--------------------CCCATCAGAC-GACACTAATGAAAATCTCGAGAGACTCCTTTTTGTGACGTTGCGAGAAGAAACAAGAATGCGATGTGACATTTGGTGCACATG---------TCCTTT
i cb4.chrX              I 854 I 8
s caeRem4.Crem_Contig0   1633922 147 -  4500979 -------ACAAGAAAAAGTTTCATGTTGCTTTCT-----ATCTTAT------------AGAATATCCAACAG-C-GACACTAATGAAAATCTCGAGAGACTCCTTTACGTGACGTACACATGAGAAACATGTATGCAATGTGACATTCGGTCCGTTTGCCCTTTCCTTCCTCT
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold622    358479 131 +   386604 -------caagaaaaaagtttcaagcTGCTTCCT-----AAC-------------------ATGGCCAACGG-C-GACACTAATGAAAATCTCGAGAGACTCCTTCATGTGACGTATACATGAGAAACATGTATGTGATGTGACATTCGGTATATTTG---------TCCTTT
i caeSp111.Scaffold622  I 12 I 18
s caePb3.Scfld02_0       2971170 138 +  4147112 -------CAGAAGCAAAGTTTCATATTGCTCCCT-----AACTTTG------------AGAATGGCCAACGG-C-GACACTAATGAAAATCTCGAGAGACTCTTTTATGTGACGTATACATGGGAAACATGTATGCGATGTGACATTCCGTGTATTCG---------CCCTTT
i caePb3.Scfld02_0      I 12 I 72
s caeJap4.Scaffold17934   109597 148 +   591668 AAAAGGGAGATAGAAAAGTTTTGcattgctcttt-----tttctttctctttccAATGAGCTTGGCCGC----C-GACTCTAATGAAAATCTCGAGAGACACTTTCATGTGACGTAAACATGGGAAACATGTATTCGATGTGACATCC-----ATTTG---------CCCTT-
i caeJap4.Scaffold17934 C 0 C 0

a score=-19851.000000
s ce10.chrX              4718187  88 + 17718866 TTCATA---TTTTAATTT----------AAGGAAATTTTTCAGGAAAAGTGAGG-----AGTGCACCTGATTTGCTCTC---------AGGGGCAAAAACCCTAA-------GCTTCCCCGA
s cb4.chrX              10057585  90 + 21540570 TTCA-------TTGACTT--CCGGGAAAAAGcaaagtattt------ttttagt----CGGTGCACCTGATATGTTCCC-------------CGGGATATCCTTTACAAGAAGCGCATCTAT
i cb4.chrX              I 8 I 2
s caeRem4.Crem_Contig0   1634077 101 -  4500979 TTCA-------TTGACTT--CCTTGAGTTTGCAAATTCCTTGCAAAGTTTTGGT-----AGTGCACCTGATATGTTCTCAGACCaagagaaatgggaaaattttt-------gtttctttcc
i caeRem4.Crem_Contig0  I 8 I 2
s caeSp111.Scaffold622    358628  81 +   386604 TTCA------TTTGACTTTGCTCAAAGAATATCAATTTACT------CCGGGGTCCCCCCAAGAATCTGATacg--------------aggaaaagaaaacatgt-------gG--------
i caeSp111.Scaffold622  I 18 C 0
s caeJap4.Scaffold17934   109745  50 +   591668 TCCATGCTTTTTAGACTT-------------GAAAGTCTCT---------------------GTACCTTTTGTA------------------CTAGAAACCC--------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2971308  72 +  4147112 I

a score=200573.000000
s ce10.chrX              4718275 179 + 17718866 AAGCAATAAACTAACCTCGATAGATGATAGTTGTGTCGCGCGAGCGCGTGCACAAATCCAATTGTCAGCAAGGTCAGCAAGCTAATAGTCGAGTTCAACAAAATAGCAGTCGTCAAAGCCGGAAATTTTTCCAATTCAGCGAACGAACGAGACTTCATGTCGACTAGCTGGAAATGACA
s cb4.chrX              10057677 173 + 21540570 ------AAAACCAACCTCGATAGATGATAGTTGTGTCGAGCGAGCGCGTGTACAAATCCAATTGTCAGCAAGGTCAGCAAGCTAATCGTCGAGTTCAACAGAATCGCTGTCGTCAGCGCCGGAAACTTTTCCAATTCGGCGAACGAGCGGGACTTCATGTCGACGAGCTGCAAATGACA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1634180 173 -  4500979 ------AAAACCCACCTCGACAGATGATAGTTGTGTCGGGCGAGCGCGTGCACAAATCCAATTGTGAGCAAGGTCAGCAAGCTAATCGTCGAGTTCAACAAAATAGCAGTCGTCAGCGCTGGGAACTTTTCCAATTCAGCAAACGAGCGAGACTTCATATCGACAAGCTGAAAGTGACA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold622    358709 179 +   386604 AATAAAGAAACCAACCTCGACAGATGATAGTTGTGTCGAGCCAAAGCGTGCACAAATCCAATTGTCAACAAGGTCAGCAAGCTAATCGTCGAGTTTAACAGAATAGCAGTCGTCAACGCCGGAAACTTTTCCAATTCAGCGAACGAGCGAGACTTCATTTCGACCATCTGTAAATGACa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2971380 179 +  4147112 aAGTCGCAAACCAACCTCGATAGATGATAGTTGTGGCGGGCAAGCGCGTGCACAAATCCAATTGTCAGCAAGGTCAGCAAGCTAATCGTCGAGTTCAACAAAATAGCAGTCGTCAGCGCCGgaaacttttccaattcaGCGAACGAGCGAGACTTCATGTCGACCAACTGGAAATGACA
i caePb3.Scfld02_0      I 72 C 0
s caeJap4.Scaffold17934   109795 166 +   591668 -------------ACCTCGAAAGATGATAGTTGTGGCGAGCGAGTGCGTGCACAAATCCAATTGTCAACAAGGTCAGCAGACTAATCGTCGAGTTCAACAGAATTGCCGTCGTCAACGCCGGAAACCTTTCCAATTCAGCGAACGAACGAGACTTCATGTCGACAAGCTGAAAATGTCA
i caeJap4.Scaffold17934 C 0 I 937

a score=817.000000
s ce10.chrX              4718454 6 + 17718866 GAACGT
s cb4.chrX              10057850 6 + 21540570 GGATGT
i cb4.chrX              C 0 I 559
s caeRem4.Crem_Contig0   1634353 6 -  4500979 GATTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358888 6 +   386604 gattca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2971559 6 +  4147112 GAATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   109961 937 +   591668 I

a score=-3485.000000
s ce10.chrX              4718460 5 + 17718866 TGAAA-------
s caeRem4.Crem_Contig0   1634359 8 -  4500979 Tcatacat----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358894 2 +   386604 -------ta---
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2971565 5 +  4147112 -------TTAAA
i caePb3.Scfld02_0      C 0 I 854
e caeJap4.Scaffold17934   109961 937 +   591668 I
e cb4.chrX              10057856 559 + 21540570 I

a score=-190.000000
s ce10.chrX              4718465 18 + 17718866 TTTTGGAATTTGAAGATG-------
s caeRem4.Crem_Contig0   1634367 18 -  4500979 -------ttttaaaaatggaaaact
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    358896 16 +   386604 ttttt--gtttgaaactg-------
i caeSp111.Scaffold622  C 0 I 691
e caePb3.Scfld02_0       2971570 854 +  4147112 I
e caeJap4.Scaffold17934   109961 937 +   591668 I
e cb4.chrX              10057856 559 + 21540570 I

a score=371.000000
s ce10.chrX              4718483 8 + 17718866 AATTTTCG
s caeRem4.Crem_Contig0   1634385 8 -  4500979 ggtttttg
i caeRem4.Crem_Contig0  C 0 I 685
e caePb3.Scfld02_0       2971570 854 +  4147112 I
e caeJap4.Scaffold17934   109961 937 +   591668 I
e cb4.chrX              10057856 559 + 21540570 I
e caeSp111.Scaffold622    358912 691 +   386604 I

a score=0.000000
s ce10.chrX              4718491 1137 + 17718866  
e caePb3.Scfld02_0       2971570  854 +  4147112 I
e caeJap4.Scaffold17934   109961  937 +   591668 I
e cb4.chrX              10057856  559 + 21540570 I
e caeSp111.Scaffold622    358912  691 +   386604 I
e caeRem4.Crem_Contig0   1634393  685 -  4500979 I

a score=380.000000
s ce10.chrX              4719628 33 + 17718866 TTGAACATATTACACTTTTATTGTATTCGATGG
s caeSp111.Scaffold622    359603 27 +   386604 tcGAACTTTCTCAACTTCCATTGTA------GC
i caeSp111.Scaffold622  I 691 C 0
e caePb3.Scfld02_0       2971570 854 +  4147112 I
e caeJap4.Scaffold17934   109961 937 +   591668 I
e cb4.chrX              10057856 559 + 21540570 I
e caeRem4.Crem_Contig0   1634393 685 -  4500979 I

a score=846.000000
s ce10.chrX              4719661 3 + 17718866 AAG
s cb4.chrX              10058415 3 + 21540570 AAG
i cb4.chrX              I 559 C 0
s caeSp111.Scaffold622    359630 3 +   386604 AAG
i caeSp111.Scaffold622  C 0 I 3
e caePb3.Scfld02_0       2971570 854 +  4147112 I
e caeJap4.Scaffold17934   109961 937 +   591668 I
e caeRem4.Crem_Contig0   1634393 685 -  4500979 I

a score=74786.000000
s ce10.chrX              4719664 312 + 17718866 TTCACAATTGATAGAAAGGAAGTACTATCAAAAGTACGAG----------------CATTTTTCTCT-------ACAAAT-AAATTTTTTG--TGAAC-----AATGGA----------GAATTCTGTTATTTTATGTGCATGACTGAGTGGATGCAATATGTTCTTAAGAAAGCACATTCAATTTCTCCCCAGCAGTTATGACTCACAAGAAATGCTCAGATTTGGATGGAATTTTTGTGCTTCA------AAAAAAAATGTTTCACAAAC-----TTTTGTCTTGAAACATTGTCTTCAAAAAGAATTGCGTTCTCAGTGAAAGCAACATCAAACACCAAATATTGTGAGAAaaaggtatta--------------------------
s cb4.chrX              10058418 254 + 21540570 TtcatttttgatctcaaaGAAGCACTATCAAAAGTGCGAG-------------------CCCCTTCTATTCCTCACAAAG-aaatc-------tgaacaaaaaaagagaggttTCTTAGGAATGCTGTTATTTTATGTGCATGGCTGAGTGGATGCAGAAAGTTCTTAAGAAAGCACATTCAATTTCCCATCAGCAGTTATGAGTCACGCGGGG--Ctc------------------------------------------gtct------------tcctttttt------ctcctc-cGGCA--------TTTTT---------------------------------ATATATAGGCATTGTACACGCAACTTCCGGTAACT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1635078 275 -  4500979 ttcatcTTTGATGAGAAAGAAGTACTATAAAAAGTACGAG-------------------CTCCTTAT-------ACaaag-aaatcttttttgtggacaaagaaaaaga-gcttCTGAGGAATGCTGTTATTTTATGTGCATGACTGAGTGGATGCAGAAAGTTCCTAAGAAAGCACATTCAATTTCCC--CGGCAGTTATGAGTCACGAGGGG--ctcagatt----------tttttaatgtcg------------aggatct------------tttttttttg-----ttcctctCAATA--------GTTCT---------------------------------TTATATTGACAGTGTACACGC-ACTTCCGGT--CTACGTG
i caeRem4.Crem_Contig0  I 685 C 0
s caeSp111.Scaffold622    359636 256 +   386604 CTCATCTttgatggagaagaagtACTATCAAAAGTACGAG-------------------TCTCTTAT-------ACaaagaaaatctttt---tgGGCGGACAAAGAGA-GATTCTGAGGAATGCTGTTATTTTATGTGCATGACTGAGTGGATGCAGAAAGTTCTTAAGGAAGCACATTCAATTT-CCTCCGGCAGTTATGAGTCACGAGGGGGTCtcagatt---------cttttttatatggttatttgaattcaaagtcc------------ttttttctt------tccgtcCAAGAA--------------------------------------------------AACAGTATTT--------------------------
i caeSp111.Scaffold622  I 3 I 31
s caePb3.Scfld02_0       2972424 290 +  4147112 TTCatctttgatgaaaaagaagtacTATCAAAAGTACGAGTTTCTTTtagattcttctttttcttat-------acAAAG-AAATCTCTT---TGG--GGACAAAGAGA-GCTTCTATGGAATGCTGTTATTTTATGTGCATGACTGAGTGGATGTAGAAAGTTCTTCAGGAAGCACATTCAATTTCCCCCCAGCAGTTATGAGTCACGAGGGGGGCTCAGAtt---------cttttttatatgaatcTTTGAAAACACTTTCCCATAGATTGTggttttttatt------cctttttcagcA--------GTTC-------------------------------------TATAGGCATCT--------------------------
i caePb3.Scfld02_0      I 854 I 1
e caeJap4.Scaffold17934   109961 937 +   591668 I

a score=3791.000000
s ce10.chrX              4719976 55 + 17718866 aagagactccagtgggaaaattgctttaaaacatgccaatcgtaataaaatggcc
s cb4.chrX              10058672 28 + 21540570 ------------------------TTCGAGA---GACAATTGTTCGAAAATGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1635353 31 -  4500979 --------------------TTACTTCTAAA---GACAATTGTTC-AAAATGACC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2972715 45 +  4147112 AACGCACTTCCGTT------TTACTTCTAAA---GACAATTGTTC-AAAATGGTC
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   109961 937 +   591668 I
e caeSp111.Scaffold622    359892 31 +   386604 I

a score=-30781.000000
s ce10.chrX              4720031 339 + 17718866 aaatattacagta---aaaacattctttaaaaattcgaaattgtaaatgatttttttgatgataga--aaaatctaactttttgccactttttcggaagtcatcgatcaaaaaatttttttttcttcgaatttgatggtctactaaagtttcaaatattaatactccaaaattatagggattcaatcatgcgaccatgctataattttctgaaaaAGTGAcaaaaactctgtaaatgtttcaaaaatgttttgaaaagttttctacatatgatattcggtcattttgcgataggtgcgatttttaaaaacttccccattggcggta-----ctccattttttaaaggaa
s cb4.chrX              10058700 110 + 21540570 ----------------TAG-----------------------TTGAGTGTT--CCATGAGATTAAACCCACATCAAA-----------------------CATCGGG------------------------------------TGAGACTTAGGGGGTTAA----------------GAagtc---------------------------aaaaaaacaaaagacaAAC-------------------------------------------------GTCATCT---------------TTCTA-----------------GGTACAAACTTC---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1635384  97 -  4500979 ----------------AAG-----------------------TTGCGTTCTTATCCTGGGATAAGA--AACATCAAA-----------------------CATCGG--------------------------------------GAGGCttagg--------------------------------------------------------aagaaaaaagagtgaagaC-------------------------------------------------GTCATTT-GAAACAC-------TTTTA-----------------GGTA-----TTC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    359923 139 +   386604 AACTCTTAC--TAGTAAAGacaattgttcaaaa----aatgttcatgtTCCCATCTTAAGA-AGGA--AACATCAAA-----------------------CATCGG--------------------------------------ATGGCTTAGTGTGT----------------------------------------------------Gaagagggaagaagaagac-------------------------------------------------gtcattt-gaaacagaaac-acATTCA-----------------GATA-----TTC---------------
i caeSp111.Scaffold622  I 31 C 0
s caePb3.Scfld02_0       2972760  95 +  4147112 ----------------AAG-----------------------TTGTGTTCTCATCTCAGGATAAGA--AACATCAAA-----------------------CACCG-----------------------------------------GGTTTAGTG-------------------------------------------------------GCCAATGAAACAAGGAGAC-------------------------------------------------gtcattt-gaaacaa-------tttta-----------------gGTA-----TTC---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   109961 937 +   591668 I

a score=230810.000000
s ce10.chrX              4720370 298 + 17718866 ttacctgttttggcagctgttgatgttgaaAACACGGAACTTCAAGACACTGTGATGGATTCAGGGAGAAGAATATTGTGACAATTGCGGTGATACTGTTGCAAACCCAAAGGCTTGTCGATAACAGATGAATGTTTGTGTGTAGACGGCGATCCGAGGCTACCGCGATCAACACAAGAAGGTTGAAGCCCAGTTGAAGGATTGCTAGGACAAAGTTCAGAGAAGATGTCCACAGCCACATCATGGATCTGAAATTGCATTAGTTCATATTTCTAGGAAGTATAAAATGCATG---ACATT
s cb4.chrX              10058810 278 + 21540570 TTACCTGTTTCGGAAGTTGTTGATGCTGGAAACATGGTACTTCTAGACATTGCGATGGATTTAGAGAGAAGAAGATGGTGACGATTGCAGTGATACTATTGCAAACCCATAAGCTAGTGGATAGGAGATGGATGTTGGTATGAAGACGACGATCCGAAGCAACAGCGATCAATACGAGTAGATTGAAACCCAGTTGAAGTATTGCCAAGACGAAGTTGAGAGACGATGTCCACAACCACATCATGA----GAAG----------------tactagaaaatcaaaaattcgta---agATT
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   1635481 282 -  4500979 TCACCTGTTTTGGTAGTTGTTGATGTTGAAAACATGGTACTTCAAGGCATTGTGAAGGGTTCAGTGAGAAGAATATGGTAACTATAGCAGTGATACTATTACACACCCACAAGCTTGTTGAAAGTAGATGGATGTTTGTGTGAAGACGACGATCAGATGCAACAGCAATCAGAACGAGTAGATTGAAACCCAGTTGGAGTATTGCCAAGACGAAGTTGAGGGAAGATGTCCACAACCACATCAtga----gaaaat--------------gactgaaaaatcaaaaatttaga-gtGGATT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    360062 274 +   386604 TCACCTGTTTTGGAAGTTGCTGATGTTGAAAACAAGGTACTTCAAGGCATTGCGATGGATTCAATGAGAAGAATATAGTGACGATTGCAGTGATACTGTTGCAAACCCAGAGACTTGTTGAGAGTAGATGAATGTTTGTGTGAAGACGTCGGTCAGAAGCCACGGCGATTAATACGAGAAGATTGAAACCCAATTGGAGTATTGCCAAGACAAAGTTGAGAGAAGATGTCCACAACCACATCATGG----AGa-----------------tactgaaa----tgaaatcttt--ATAGAGT
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0       2972855 289 +  4147112 CCACCTGTTTTGGAAGTTGTTGATGTTGAAAGCAGGGTACTTCCAGACATTGTGATGGATTCAATGAGAAGAATATGGTGACGATTGCAGTGATACTGTTACACACCCAGAGACTTGTTGAGAGAAGATGGATGTTAGTATGAAGTCGTCGGTCCGAAGCAACAGCAATGAGGACAAGCAGATTGAAACCCAGTTGGAGTATTGCCAAGACAAAGTTGAGAGACGAAGTCCACAACCACATCATGG----GAAGTTA--------ggaatgactgaaaatctagaaatatTTGAGTATACT
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   110898 259 +   591668 TCACCTGTTTTGGCAGTTGTTGATGGTGATAGCACGAGACTTCCAGGCATTGCGATGGATTTAGCGAGAAGAAGATGGTGACGATGGCTGTGATACTGTTGCAGACCCAGAGGCTAGTAGACAGTAAGTGAATATTGGTGTGAAGTCGCCGTTCCGATGCGACAGCGAGAAGGACTAGAAGATTGAAACCGAGTTGAAGGATGGCTAGGACAAAGTTTAGTGAGGAGGTCCACAACCACATCATGG----GAAAT---------------GAATGACA-----------------------
i caeJap4.Scaffold17934 I 937 C 0

a score=-1892.000000
s ce10.chrX              4720668 48 + 17718866 CAAGAACGGAAGTGTCTGGAAGAAG-AGGGGAGGG---GGGGGGGGGGGGAG
s caeRem4.Crem_Contig0   1635770 35 -  4500979 CGACTGCGGAAGTGTCTGGAGACAG---GAGAGGGAAG--------------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    360341 31 +   386604 -AGCGGAGAAAGTGTCTGGAGAAGG---GGGAATG-----------------
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0       2973149 34 +  4147112 -AGTTTAGGAAGTGTCTGGAGTAAGGAAGAGAAGG-----------------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   111157 15 +   591668 -------------GACTGCaagaaa---aag---------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10059088 47 + 21540570 I

a score=184655.000000
s ce10.chrX              4720716 711 + 17718866  
s cb4.chrX              10059135 760 + 21540570  
i cb4.chrX              I 47 I 11
s caeRem4.Crem_Contig0   1635805 780 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold622    360372 806 +   386604  
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0       2973183 801 +  4147112  
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold17934   111172 581 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-421.000000
s ce10.chrX              4721427 3 + 17718866 TCG
s cb4.chrX              10059906 3 + 21540570 CCT
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1636586 2 -  4500979 -tt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    361189 3 +   386604 cca
i caeSp111.Scaffold622  I 11 C 0
s caeJap4.Scaffold17934   111753 3 +   591668 TTG
i caeJap4.Scaffold17934 C 0 I 1858
e caePb3.Scfld02_0       2973984 39 +  4147112 I

a score=1107.000000
s ce10.chrX              4721430 4 + 17718866 GGCG
s cb4.chrX              10059909 4 + 21540570 CGCG
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   1636588 4 -  4500979 ggCG
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold622    361192 4 +   386604 CACG
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2973984 39 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I

a score=-1336.000000
s ce10.chrX              4721434 13 + 17718866 -------------------GCAG--AGTTGTGGT
s cb4.chrX              10059928 13 + 21540570 -------------------GCCA--Ctctgtgtt
i cb4.chrX              I 15 I 14
s caeSp111.Scaffold622    361196 34 +   386604 GCTAGTCAATTCCTCATCAACCAAGCTTTTTGCT
i caeSp111.Scaffold622  C 0 I 9
e caePb3.Scfld02_0       2973984 39 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeRem4.Crem_Contig0   1636592 37 -  4500979 I

a score=19778.000000
s ce10.chrX              4721447 73 + 17718866 AGACAAAAATGGCGTTCTAATAGGTAGTGACGACCA---ATGTCTTTAGTCGGGGGGGAAAAGAAAAAGAAG---GGA-G
s cb4.chrX              10059955 72 + 21540570 agaCAAAGATGGCGTTCTAATAGGTA--GACGACGACGGATGTGTTTGTCGGGGAGAATgtaaaatgggaaa---aa---
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1636629 66 -  4500979 AGACAAAGACGGCATTCTAATAGGTA--GACGACGA---ACGTCTTT-----GGGAAGGGAAGAAAGGGAAG---GAAA-
i caeRem4.Crem_Contig0  I 37 I 360
s caeSp111.Scaffold622    361239 70 +   386604 ACCCAAGAAAAACGTTCTAATAGGTA--GAGACCAA---AAGTCTTTGGTtgggaaaagaaggaaagaaaaa---gag--
i caeSp111.Scaffold622  I 9 C 0
s caePb3.Scfld02_0       2974023 73 +  4147112 TGACATAGATGGCGTTCTAATAGGTA--GACGACAA---ATGCCTTTGGTCGGGGAGTATACGGTGGAGAAATAGGAG--
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17934   111756 1858 +   591668 I

a score=3280.000000
s ce10.chrX              4721520 23 + 17718866 CACACTTATTCATAATTGCAAGC
s cb4.chrX              10060027 22 + 21540570 agctCTCAGCCATAAGCACTGG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    361309 23 +   386604 ctcACTTATTCATATTTGTCGgc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2974096 23 +  4147112 CTCACATATTCATAATTGTCAGC
i caePb3.Scfld02_0      C 0 I 805
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=706.000000
s ce10.chrX              4721543 17 + 17718866 GAAAAAAGGGAACAGAT
s cb4.chrX              10060049 14 + 21540570 ---AAGTCGGAATGCAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    361332 17 +   386604 ataaaaaataaatgtat
i caeSp111.Scaffold622  C 0 I 319
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=60.000000
s ce10.chrX              4721560 61 + 17718866 A-----GCTAATATA---TGTATGCGCCTGAACCAAAAATCAGAGGCAGGCAAAAACATGAAAACATTA
s cb4.chrX              10060063 69 + 21540570 ATTTTTGCTAGAATAACTTCCATGGAATTGAAACTATAAAttgaaaaggaaagaaaagagaagacgtGA
i cb4.chrX              C 0 I 25
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=0.000000
s ce10.chrX              4721621 47 + 17718866 CATACCCCAAAAAATGTTACTCATTTATGGAGGCCTATTTTTTCATC
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e cb4.chrX              10060132 25 + 21540570 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=724.000000
s ce10.chrX              4721668 24 + 17718866 AAAAATAGACATCTGAAAAAAAAG
s cb4.chrX              10060157 24 + 21540570 AAAGGTGGGTAATAGGACAAAAAG
i cb4.chrX              I 25 I 21
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=0.000000
s ce10.chrX              4721692 12 + 17718866 GTTTCTAAGTTT
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e cb4.chrX              10060181 21 + 21540570 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=-3397.000000
s ce10.chrX              4721704 732 + 17718866  
s cb4.chrX              10060202 707 + 21540570  
i cb4.chrX              I 21 I 146
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=0.000000
s ce10.chrX              4722436 177 + 17718866 CAAAATGTTGGCCGAAAACCATATACAACTGTAAAAATGGCAATTAATTTAGAATTTGTCGTGAGCAGAGCAAAGATATTATAAAAAAATCTCTCCTCTATTCTGGAATTCATGCCGCATTAATAAGTAATTCCACGGTTTCTCGTTCATAAATCTACGTGATCTCTAGTGTTTCAA
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e cb4.chrX              10060909 146 + 21540570 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=798.000000
s ce10.chrX              4722613 17 + 17718866 GTGTCCAGTTTAGTTTT
s cb4.chrX              10061055 17 + 21540570 GCATCCAGCAAAGTTTT
i cb4.chrX              I 146 C 0
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1636695 360 -  4500979 I

a score=259.000000
s ce10.chrX              4722630 5 + 17718866 AGTGT
s caeRem4.Crem_Contig0   1637055 5 -  4500979 AGTTT
i caeRem4.Crem_Contig0  I 360 C 0
e caePb3.Scfld02_0       2974119 805 +  4147112 I
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e cb4.chrX              10061072 0 + 21540570 C
e caeSp111.Scaffold622    361349 319 +   386604 I

a score=4284.000000
s ce10.chrX              4722635 27 + 17718866 TACATGTTGTGTCAGAATCA-----GGGGGTC-
s cb4.chrX              10061072 23 + 21540570 -ACACGCGGTGTCAGGA--------CGGAATG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1637060 32 -  4500979 TACATGGTGTGTCagaaggaaaaatgggaatg-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2974924 28 +  4147112 TACATGTAGTGTCAGGAGGA-----CGGAATGA
i caePb3.Scfld02_0      I 805 C 0
e caeJap4.Scaffold17934   111756 1858 +   591668 I
e caeSp111.Scaffold622    361349 319 +   386604 I

a score=91.000000
s ce10.chrX              4722662 1 + 17718866 A
s caeJap4.Scaffold17934   113614 1 +   591668 a
i caeJap4.Scaffold17934 I 1858 C 0
e caePb3.Scfld02_0       2974952 0 +  4147112 C
e cb4.chrX              10061095 0 + 21540570 C
e caeSp111.Scaffold622    361349 319 +   386604 I
e caeRem4.Crem_Contig0   1637092 0 -  4500979 C

a score=64314.000000
s ce10.chrX              4722663 156 + 17718866 AAAAGCTTCCGAGTACCCTTGTGACCTAGTGAACA--CATACACTC----CG-----------CTAAAAATGAGTGTTGTTGTTGTTGACCAAAAATGGTGGAGGAGAATGTAAACTAATAG--------------------------------------------------TAAGAGAATGTCTGCTTTAGAATGTGAATGAATAAAAAAGAA--ACCACATT------T
s cb4.chrX              10061095 166 + 21540570 AGACACTTCCGAGTACCCTAGTGTCCTAGTGAACATGCATACACTCTTCCAACAAACAGCCCGCCAAAAatggttgttgttgttgttgaccA--------------GAAAGCGGAAAAATGT--------------------------------------------------CGCGTctgtttctgtttcagaaTATGAATGAAT-GAATAGAAATGCGACATTTTTGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1637092 155 -  4500979 agACACTTCAGAGTACCCTTGTGACCTAGTGAACA--CATACACTCGTCCTA-----------CTAAAAatg---gttgttgttgttgaccAAA--------AGCTGAATGTAAAAGAATGCGC---------------------------------------------GTGTGCgtctgtttctgtttcagaatatgaatgaat-gaatagaA--GCGACATT----TCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    361668 144 +   386604 AGACACTTCCGAGTACCCTTGTGACCTAGTGAACA--TATACACTCGTCTCA-----------CTGAAAatg---gttgttgttgttgacca--------------aaaaacaagaagaata------------------------------------------------cGCATGTGcgtttttgttttagaatatgaatgaat-gaaaagaa--gcgACATT------T
i caeSp111.Scaffold622  I 319 C 0
s caePb3.Scfld02_0       2974952 139 +  4147112 -GACACTTCCGAGTACCCTTGTGACCTAGTGAACG--CATACACTCGTCCCA-----------Acaaaa-------ttgttgttgttgacca--------------aaaaacgaagaaagaa------------------------------------------------tGCGCAtgtgtttctgtttcagaatatgaatgaat-gaaaagaa--acgacATT------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   113615 185 +   591668 gaaaactttagAGCATTTCTGTGACCTTTTGAACA--CATTAATTC----cg-----------tcaaaa------attgttatttttgacta--------------aaaaaaaaggcacAAAGCTCGCATCTCGTCAGACTACGTTTTAtgggaattttttgttgcaaaacaTAAACCAgcatttgtttaaaaataaaagggaca-agaaaaaa--aacacatt------t
i caeJap4.Scaffold17934 C 0 I 29

a score=-851.000000
s ce10.chrX              4722819 10 + 17718866 TGT-----------------------------TTTCCAA
s cb4.chrX              10061261 39 + 21540570 CTCTCcaggtttttttcttcaattatgCTCGTTTCCCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1637247 15 -  4500979 TTCTTCAG------------------------TTCCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    361812 15 +   386604 TGTGCGAG------------------------TTCCCAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2975091 15 +  4147112 TGTGGCAG------------------------TTCCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   113800 29 +   591668 I

a score=65849.000000
s ce10.chrX              4722829 288 + 17718866 ---A--GGT---------------TGAA------------A--ACATTGTTGTT-----CTTTGAAACTTCA--TTAAAGAATGTGTTAAATAAAATAAAAAGATAGAAGAGGTGGTTCAAAAAATACAGGCACG--TACGAGAA-AGTATT-------------------------------------------------GAAAA-----------------------------------GA-----------------ATTCCGG-----------GCAAAGAATAATATG---TTTGTGATAA-AAAG---TCATGTGTTAACAGTAAGGTAATATGTCCAATATATAATGTTGAACAGTGTGAACAATCCGGGAAACATTATCATCGACAATCGATCGATTTCTTCTGTGGTCCAATGCTAAAC-------TCATTTTTATGT-----AA-CAATTTCAA
s cb4.chrX              10061300 389 + 21540570 ---ATGGGCTTAGGAGAGTTTTTATGGGCATTGCAA----T--ATGGGAATATT-----TCATGAGATACCA--AAAAACAGAtagagagaaggaaaaaatatatag---------------aaatACAGGCACG--TATTTGAACATTGTTTGGGaaaaaa----tagtgatgcagaaaaacttttttaaaaa-atgataggaaaaaatgtttaggaagacaaaatTATGACAT-GGTT-GATTTTAC-----------ATTCGGA-----------GCACGAAAACATATGTATTCTCTGGtaacacaattttcaattgttgACAGTGAGGTAATACGTCCAGTAAATGATGTTGAACACAGTGAACAGTCCGGGGAACATGATCATCGACATTTGGTCGATCTCCTCGGTGGTCCATTGCTGGAA-------ATAATCCAAATT-----GA-CTAGGCTAA
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   1637262 359 -  4500979 ---ATGGGT---------------CGGAGATTGCAAACAGA--ATGGGAATATT-----TTATGAgataaaaggaaaaaagaaaaaataggaaaagaaaagagatag--gAGGTGGTTC-GAAAATACAGGCACG--TACAAGAA-AGTGTT--------------GAATAttacagaaa------ttgaaaat-aaaattgaaaa------ttagaatg---aaGTTATGACATGGTTG-GG-TTCAC-----------ATTCgag-----------gaagaaaaatatgtg-----TTTGATAA-GCAA--TTCAAGTGTTTACAGTCAGATAATATGTCCAATAGATGATGTTGAACACCGTGAATAATCCAGGAAACACTATCATCGACATTCGGTCAATCTCTTCAGTTGTCCAGTGCTaaaa-------aaaaGACTGTTC-----TATTTAGGTCAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold622    361827 353 +   386604 ---ATGGGT---------------TGGAGCATTCGAACAAATGaggaaatgttt-----ttattggaGAACA--AGGAAAAGACAAAGACATAGAGTATAAA---AG--GAggtgattcaaaaaatacaggCACG--TACGAGGA-AGTAATAATTGAACAATGGATAGTATTGC-----------TTCAAata-gttgaagaaaa----------------------atgacat-gGTG-GGGTTCAC-----------ATTCGA------------GCAAGAAAATATGTT-------TGATCA-GAGAATTTTAGACATTTACAGTGAGATAATAAGTCCAGTAGATAATATTGAACACAGTGAACAATCCGGGAAAAACGATCATTGACATTCGATCAATTTCTTCGGTTGTCCAGtgctgaaa-------ttgaaactttgc---ATTA-GAATATCAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2975106 358 +  4147112 ---ATGGGT---------------TGGA---------------AAGGAAAGAGT-----TTATTGAATTAAA--GGCGACAGATAAAATAACAAAGCAGAAA-------GAGGtcgttcaaaaaatacagGCATGTATACAAGGA-TGTATTGGGGAAacgttg--tttttttaa-----------tttgattaTATTGAGgaagattctttttt--------taattatgaCAT-GGTGAGGGTTcag-----------atttgagaaaaagagaatgaaaggaaaaatatG-------TAATTG-ATAGAGTTTAGGTATTCACAGTTAGGTAATAGGTCCAGTATATGATGTTGAAGACAGTGAAAAGTCCAGGAAACACGATCATTGACATTTGGTCGATTTCTTCGGTTGTCCATTGCTGAAA-------ATAGATTATTTc----------atatcat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   113829 358 +   591668 aagttgaat---------------tgga------------a--aaaaaaatattgcaaatttttaaa---ca--agaaatgtagtgaaaataaaagaaaagacaaaaaagagGTGGTTC-GCAAATACAGGCAAG--TACACGAA-AGTATC--------------------------------------AATC-ATTAAAGCATATCATTT-----------TATGTATGACAT-GGTT-GTTTTCATTCTCACAataaattcgcaaaaa-------aaggGAACAAATATG---CTTCTGATAC-GTAA--TTCACGGGTTAACAGTGAGGTAATAGGTCCAATAAATGATGTTAAACAAAGTAAACAGTCCTGGAAACATGATCATGGAAATTCGATCAATCTCTTCTGTTGTCCATTGCTGAAAAACCACCatacatttgtttttgttta-caatttc--
i caeJap4.Scaffold17934 I 29 C 0

a score=-9431.000000
s ce10.chrX              4723117 18 + 17718866 ---------TATTCACCATTTTT-------------TGTT
s caeRem4.Crem_Contig0   1637624  9 -  4500979 --------------ATTATCTGt-----------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold622    362180 10 +   386604 -----------------CTTttc-------------aatt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2975464 23 +  4147112 -----------------gtttttttcagatttcgaaaaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   114187 22 +   591668 catccaagtttccttccgtttt------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10061689 17 + 21540570 I

a score=153488.000000
s ce10.chrX              4723135 193 + 17718866 ACCTTCTTCATTTTTATCGATGCCATTGAACTAAACTTGGTTTCCACTTGAGAAAATTGTGTCTCTTCTAATCCATCTAGAAGTAATACTTTCTCGGATCGGTTGGCATTTGGAGCATGGGAAATTGTGCTGCTCGACGCAATTATGAGCCGTTTTCGCATTCTTGGGTCTGA----AAAAACGTAATCGTGAGAAA
s cb4.chrX              10061706 192 + 21540570 ACCTTCTTCATCTTGATTGTGACCATCGAACTGTACTTGGTGTCCACCTGTGAGAACTGCGTCTCTTCCAATCCGTCTAGCAGGAGCACTTTCTCGGCTCGGTTCTCGTGAGGAGCGTGGGAAATTGCGGTATTCGAAGTGAGCATCAGTCGCTTTCTCATTCTTGGGTCTGA----ATAAC-GAAAGAGTGAGAAT
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   1637633 192 -  4500979 acctttttcatttttatcgatGCCATTGAACTGTATTTAGTGTCAACCTGAGAGAACTGTGTCTCTTCCAATCCATCCAGCAGTAACACCTTTTCAGCTCGGTTGGCATTTGGTGCATGGGAAATCGTACTGCTAGAAGCGATAATTAGCCGTTTTCTCATTCTTGGATCTGG----AATAA-ATAAGTGTGAgaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    362190 191 +   386604 acttttttcattttgattgatGCCATGGAACTGAATTTCGTATCGACTTGTGAGAACTGTGTCTCTTCTAATCCATCTAAAAGTAACACTTTCTCGGCTCGATTCGCATTTGGAGCATGAGAGATTGTGCTGCTCGAAGCAATGATCAGacgttttctcattcttgGATCTAA----AAGAA-CCAAAATAGTGGA-
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2975487 192 +  4147112 accttcttcattttgattgagGCCATTGAGCTGTATTTTGTATCGACTTGTGAGAATTGTGTCTCTTCCAACCCATCAAGAAGTAACACTTTCTCGGCACGATTAGCGTTTGGGGCATGAGAGATTGTACTGCTGGATGCAATAATCAAGCGTTTCCTCATtcttggatctga----aaaaa-ataggtttgGGAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   114209 193 +   591668 acctttttcatttttattgacgCCATGGAGCTATACTTGGTTTCCACTTGAGAGAATTGCGTCTCTCCCAATCCATCAAGCAGAAGCAGTTTCTCAGTACGATT---GTGAGGAGCATGCGAAATTGTGCTATTTGAGGCGATAATTAGACGTTTTCGCATTCGCGGAtcttaatttaaaat-tttaatatgtGAAA
i caeJap4.Scaffold17934 C 0 I 19

a score=-8488.000000
s ce10.chrX              4723328 29 + 17718866 -------------ATGAAATGAATTTAATT---ATTAGCGTGAGA
s cb4.chrX              10061898  2 + 21540570 ----------------------------------TT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1637825 40 -  4500979 agattaaaaaaaaaaaaaataaa--taatt---attatagtggga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    362381 19 +   386604 ---------------------GA--CAATA---ATAAATGTGAGA
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2975679 24 +  4147112 -------------------TGGA--TTATGAATATAAGTGTGAGA
i caePb3.Scfld02_0      C 0 I 162
e caeJap4.Scaffold17934   114402 19 +   591668 I

a score=580.000000
s ce10.chrX              4723357 5 + 17718866 TTATA
s caeRem4.Crem_Contig0   1637865 5 -  4500979 atata
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold622    362401 5 +   386604 CTGTA
i caeSp111.Scaffold622  I 1 C 0
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402 19 +   591668 I
e cb4.chrX              10061900 0 + 21540570 C

a score=-4446.000000
s ce10.chrX              4723362 64 + 17718866 ACGGATCTTGAAAAGTGTTAGATACGTTCAATTTTGAAAATATATTGTGCAAAAATCTGCAAAA---------------
s cb4.chrX              10061900 42 + 21540570 -----TCCTGA-------CAGCTGCTT----ACTTGA----AT--TATGAGGAACCCTGTATAT---------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    362406 49 +   386604 ---------------------CTATGT-----CTGGA----ATAATATCCGAGAATCTATACGACAAACATCATCAAAA
i caeSp111.Scaffold622  C 0 I 18
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402 19 +   591668 I
e caeRem4.Crem_Contig0   1637870 32 -  4500979 I

a score=-3077.000000
s ce10.chrX              4723426 490 + 17718866 ATCAAAAATCTAACTTCCCTCTTTTCATAAGTTGGGTTTGATTTTttaaagtgaattagcgccagtgaacaaaatgttggtatcttctcatatagtgcctagagaaactccaaatatcatattaaacattttcaaaaaaaaaattaattaaaaaaatgtatagtaaaaaagtggcaattattcagtttttgcctatgctagttttgaaaaatggccaaaaaaTTTGTTTAAAAAAATCACattttaattatattttaaaaaCTGTATGTTTAAAGGTAATCGAAATTGtttaaaattttcaaaatttgtttaaaattgatctaaatgaaattatttaaattaatatcaatttta--gtaaattttaaaatttaCCAAA---ACTTACAAAATGTTAGAAAATGTTCAAAAATCTAAGTTTTTTAA----CGTTTCTTTATATAATACTTGGTAACTTTAATTCAGATCGCTA-CTTCCCATAGGAAAGTATTAGGAGTTT
s cb4.chrX              10061942 354 + 21540570 TCAAGAAAT----------------------------------------------------------AATTAAATTTAGGTGTCGT--------------GGGAAAAAACGAAGT----TATCAAGAATTTTCGA--------TGAATC--------------TAAATTATTGGGAAGT------------------CTGGTT----GGggcgctgaaaaaatttggagggaAGAATC----TTTGCGCAAATT---AAGACTGAATTTCATGAactgatttctattttttgaatttttcagcaataacTTTTGAAGGAACAATAGAAAAGAATCCCTTTTGatacagggtttacggtaaaGCATAA--TTTGATATGTTTACATGCAAAATGC-----AGTGTTCCG-----TAAATGCTGTAATAGCCGCGCCTTCATAA------TTGCGCTTTGGGCTCAGTTGTCTAGCTTTCCGtaaagaa-tatcaaaaattt
i cb4.chrX              C 0 I 158
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402  19 +   591668 I
e caeSp111.Scaffold622    362455  18 +   386604 I
e caeRem4.Crem_Contig0   1637870  32 -  4500979 I

a score=0.000000
s ce10.chrX              4723916 256 + 17718866 TGGTAATTTCAATGTGACTAAAACGCCTATTCGCCGTTAATTTGCTATGAGTGCTTCACAATCAGTCAGCACAATGGGCTTTTTGAAATCAAACGCAAACGCTCTTAATTATCACGAAATATCTTCGAAAAATCTTGAAGAAATTTTCTAGTTAATTTTTTTTGGCGGTTAACATATTTCATATTTTTCAGCGGTTCCTGAAAATTTCTAGGTACACTACTTACAACAACCGTTACCGCTAATCAAAGTATTTTCC
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402  19 +   591668 I
e cb4.chrX              10062296 158 + 21540570 I
e caeSp111.Scaffold622    362455  18 +   386604 I
e caeRem4.Crem_Contig0   1637870  32 -  4500979 I

a score=-10.000000
s ce10.chrX              4724172 9 + 17718866 ATTTTGCCC
s cb4.chrX              10062454 7 + 21540570 attt--cca
i cb4.chrX              I 158 C 0
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402 19 +   591668 I
e caeSp111.Scaffold622    362455 18 +   386604 I
e caeRem4.Crem_Contig0   1637870 32 -  4500979 I

a score=149.000000
s ce10.chrX              4724181  8 + 17718866 TCATTAAT---
s cb4.chrX              10062461 11 + 21540570 cCATTAAACGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    362473  8 +   386604 TCATTACT---
i caeSp111.Scaffold622  I 18 I 1
e caePb3.Scfld02_0       2975703 162 +  4147112 I
e caeJap4.Scaffold17934   114402 19 +   591668 I
e caeRem4.Crem_Contig0   1637870 32 -  4500979 I

a score=249064.000000
s ce10.chrX              4724189 281 + 17718866 ACCTGTTGATCCGTAACTTTTGAACGACTGCGGAACATCATTCGGAATATGGTTTCTACATATCCTTGGGCTGTTTGGGCACGATGATGGAGACATTAGATGAGAGCATGTACTATTCTCCCGACCTTTCTGATGTTTTGTCGCTTCTTCATC---TTGTTGTTTTTGTTGTTGAGCT---TGTCGGTTCTCAGAACGAGCACCCATTGAGCCAATGATCGCAAGTTCCAATAAGGAACAAAACACAAATGTTAGACAGACTAACATCCAAACGTCTAGGAATAATA
s cb4.chrX              10062472 278 + 21540570 ACCTGTTGACCCATAGCTTTTGAAAGATTGTGGCACATCGTTTGGCACATGATTCCTGCATATCCTTGGACTACTCGGACACGACGATGGAGACATCATATGAGAACACGTACTATTCTCACGacctttttgttgttttgtcGTCTCTTCTTC---TAGTTGTTTTTGCTTCTGagct---t---gattttcagagcgaGCACCCATCGAGCCAATGATCGCCAGCTCCAAAAGAGAGCAGAAAACAAAAGTGAGGCATACCAGCATCCAAACGTCTAGAATAAATC
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1637902 281 -  4500979 ACCTGTTGACCCATAGCTTTTGAACGATTGCGGTACATCATTTGGTACATGATTCCTACATATTCTCGGACTATTCGGACAAGACGATGGAGATATTAAATGAGAACATGTACTATTCTCCCGACCtttttgttgtttcgtcgtttcttcatc---ttgttgtttttgttgttgagct---TGCCGATTTTCAGAACGTGCTCCCATCGAGCCGATGATCGCCAGCTCCAAAAGAGAACAGAAAACAAATGTAAGACATACCAGCATCCAAACATCTAAAAGAAACT
i caeRem4.Crem_Contig0  I 32 I 2
s caeSp111.Scaffold622    362482 279 +   386604 ACCTGTTGATCCATAACTCTTGAATGACTGCGGCACATCATTTGGCACATGATTTCTGCATATCCTAGGACTATTCGGACATGAAGACGGCGACATTAAATGAGAACATGTACTATTCTCTCGTCCTTTCTGTTGTTTTGTCGTTTCTTCATCCTGCTGCTGCTTCTGTTGCTGAGCC---TGTCTATTCTCAGAACGGGCTCCCATAGAGCCAATGATAGCTAGCTCCAATAGGGAGCAAAACACGAATGTTAGACAGACTAGCATCCAAACGTCTGGA---TA--
i caeSp111.Scaffold622  I 1 I 37
s caePb3.Scfld02_0       2975865 279 +  4147112 ACCAGTTGATCCGTAGCTCTTAAAAGACTGTGGCATTTCATTCGGCACATGATTTCTGCATATCCTTGGGCTATTCGGACATGAAGCCGGAGATATCATATGAGAACATGCACTG---TCCCGtcctttttgttgttttgagcTTTCTTCCtc---ctgttgtttttgttgctGAGCCGCTTGGCGATTTTCGGAACGGGCTCCCATGGAACCAATGATAGCCAGTTCCAACAGGGAGCAAAATACGAATGTTAGGCAAACCAGCATCCAAACAtctggaatttg--
i caePb3.Scfld02_0      I 162 I 6
s caeJap4.Scaffold17934   114421 281 +   591668 ACCTGTAGACCCATAACTCTTGAAAGACTGCGGTACATCGTTCGGAACATGATTTCTACAGATCCGTGGACTATTTGGACAGGAAGAAGGAGACATTATATGTGAACACGTGCTATTCTCACGACCTTTCTGTCGTCGGGCCACTTCTTCCTC---TTGTTTTTGCTTCTGCTGAGCT---TGTCGATTTTCAGATTGTGCTCCCATTGAACCAATTATTGCTAGTTCTAGAAGAGAGCAGAATACAAAAGTGAGACAAACAAGCATCCAAACATCTGAAAGCAATC
i caeJap4.Scaffold17934 I 19 C 0

a score=-5428.000000
s ce10.chrX              4724470 29 + 17718866 ATTGATAATGATAAAAAAGCTTCACTATG------
s cb4.chrX              10062758 25 + 21540570 ATTAATAATC----CTAGATTTCATTAAA------
i cb4.chrX              I 8 I 3
s caeRem4.Crem_Contig0   1638185 14 -  4500979 ---------------CGAATTTCAGtgga------
i caeRem4.Crem_Contig0  I 2 I 13
s caePb3.Scfld02_0       2976150 24 +  4147112 atcatTCATC-----GGGTAATCATTACA------
i caePb3.Scfld02_0      I 6 I 5
s caeJap4.Scaffold17934   114702 31 +   591668 ----AAAAtgtttattaattttcaatattcAAACA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    362761 37 +   386604 I

a score=141099.000000
s ce10.chrX              4724499 155 + 17718866 TTACCTAAAGCTTTTACATAGCTTACTCGTGGCAGGTTCCTCATAATGTTACCAAACTGAAATGTCAAGGCTAACAAAGAATTGACCCCTAGCATTGTTCTGGCTGGTATCATTTTTGGTCCCAAGCAAAAACTGATCCAGCTGAAAGGAGAAGC-----
s cb4.chrX              10062786 150 + 21540570 CAACCTAAAGCTTTCACATAGCTGACTCTTGGTAAGTTCCTCATAATATTTCCGAATTGGAATGTGAGAGCCAGAAGAGAGTTAACCCCCAACATTGTCCTTGCTGGTATCATTTTTGATCCCAGACAGAAACTGATCCAGCTGAAAGAT----------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1638212 150 -  4500979 TTACCAAGCGCTTTAACATAACTGACTCTCGGCAGATTTCTCATGATATTTCCAAACTGGAATGTTAGGGCTAGAAGAGAATTGACCCCCAACATTGTCCTAGCAGGTATCATTTTTGGTCCCAAACAGAAACTGATCCAACTGAAAACA----------
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold622    362798 149 +   386604 TTACCTAAAGCTTTGACATAACTAACTCTCGGAAGGTTTCTCATAATATTTCCAAATTGGAATGTCAGTGCCAGCAAAGAATTGACCCCCAGCATTGTTCTAGCAGGTATCATTTTTGGTCCGAGACAAAAACTTATCCagctgaaaca-----------
i caeSp111.Scaffold622  I 37 C 0
s caePb3.Scfld02_0       2976179 150 +  4147112 TTACCGAGAGCTTTGACGTAACTGACTCTAGGCAGATTCCTCATGATATTTCCGAATTGGAAAGTCAGCGCCAATAAAGAATTGACCCCTAGCATAGTCCTTGCCGGTATCATTTTTGGTCCCAGACAGAAACTGATCCAgctaaaacat----------
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   114733 155 +   591668 GTACCAAGAGCTTTGACATAACTGACTCTTGGAAGATTCCTCATGATGTTTCCAAACTGAAAAGTTAGTGCCAGCAAAGAATTGACGCCTAGCATTGTCCTAGCCGGAATCATTTTAGGTCCCAGACAGAAACTAATCCAACTGaaataa-----aatac
i caeJap4.Scaffold17934 C 0 I 38

a score=-2251.000000
s ce10.chrX              4724654 10 + 17718866 GTGTTT----------GAAA
s cb4.chrX              10062936 20 + 21540570 TTTTGttataaaaagaaaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1638362  6 -  4500979 TT--------------GAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    362947  4 +   386604 ----------------aaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2976329 10 +  4147112 gttttt----------gaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   114888 38 +   591668 I

a score=119569.000000
s ce10.chrX              4724664 154 + 17718866 AAC-------AACAACATGTTT----------------------------------GTGTAATACCTGATAAATATTGTAAGATATGTTGGAATATATGCTTGGAAAATATACCACCCGTAACGTCGACTAAAAACAAATGTCATTGTGAGCTCGTTCCATACACCAGCAGGATATATCTA------------------AAAGTTATATGTAT---------------------
s cb4.chrX              10062956 180 + 21540570 aaaatattatgaaaacatgtttttgttt-t--------------------------caatagtACCTTATGAATATTGTGAGATATGTAGGAATATAGGCTTGGAAAATATACCACCCGTAACGTCTACTGAAAACAAATGTCATTGTGAGCTCATTCCATACACCGGCTGgataaatctggaaaaagttGATCAAtgcaaaaatgg---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1638368 162 -  4500979 TATGTatca-gaaaacatgtttttctttAG--------------------------TCGCATTACCTTATGAATATTGTCAGATATGTTGGAATATATGCTTGGAAAATATACCACCCGTAACGTCTACTGAAAACAAATGTCATTGTTAGCTCATTCCATACACCAGCAggatatatctg------------------aaaaatgt---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    362951 158 +   386604 caa-------gaaaacatgttttcagTCTG------------------------TGCTCCATTACCTTATGAATATTGTGAGATATGTCGGTATATATGCCTGGAAAATATACCACCCGTAACGTcgactgaaaacaaatgtcATAGTGAGCTCATTCCATACTCCAGCAGGATATAtctg------------------agaaagaa---------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2976339 151 +  4147112 aac-------aaaaacatttttttcatttt-------------------------------ctacctTATAAATATTGTGAGATATGTTGGAATATATGCTTGGAAAATATACCACCCGTAACGTCTACTAAAAACAAATGTCATTGTGAGCTCGTTCCATACTCCAGCAGgatatatctg------------------aaaaacaa---------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   114926 203 +   591668 aac-------aaaaacatgttttcttttttcttttttttttctcctctctttttttcttttttacctGATGAATATTGTCAGATACGTTGGGATATAGGCTTGGAAAATGTACCAGCCGTAGCGTCGGCTGAATACGAATGTCATCGTCAATTCATTCCAGACACCGGCCGGATAAatctg------------------aaaaaaca------aaacaacgaaattatatgtat
i caeJap4.Scaffold17934 I 38 I 1368

a score=-11484.000000
s ce10.chrX              4724818 63 + 17718866 GTATATCTAATTGATAAAGAAAAAAAACGCTCATTTCAATTGAAAAATAACATTTAAAAAAAA
s cb4.chrX              10063136 25 + 21540570 ------------------gaaaacaaGAGATCATT-----TGTGTATA---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1638530 30 -  4500979 ------------------gaaatgaaCAGAATATTGAAAGTGAataaa---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    363109 32 +   386604 -----------------aaaaaacaaaaagtgagcAAAGATCAGAAAA--------------G
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2976490 32 +  4147112 ------------------------atatgGTTGctatatatgaaaaaaatagt-------gca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   115129 1368 +   591668 I

a score=475662.000000
s ce10.chrX              4724881 591 + 17718866  
s cb4.chrX              10063161 717 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1638560 585 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold622    363141 583 +   386604  
i caeSp111.Scaffold622  C 0 I 34
s caePb3.Scfld02_0       2976522 588 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   116497 593 +   591668  
i caeJap4.Scaffold17934 I 1368 C 0

a score=-2264.000000
s ce10.chrX              4725472 14 + 17718866 GCAACATTTGAGAA
s cb4.chrX              10063884  8 + 21540570 TTGAATGT------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1639151 14 -  4500979 Ttgtgtttttagaa
i caeRem4.Crem_Contig0  I 6 C 0
s caePb3.Scfld02_0       2977116 14 +  4147112 ATCAAATTTGAGaa
i caePb3.Scfld02_0      I 6 I 22
s caeJap4.Scaffold17934   117090  6 +   591668 --------AAAGAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    363724 34 +   386604 I

a score=313.000000
s ce10.chrX              4725486 13 + 17718866 ATAATGTAGACAT
s caeRem4.Crem_Contig0   1639165 10 -  4500979 aaaa---agatat
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   117096 13 +   591668 AGAATGAACAAAT
i caeJap4.Scaffold17934 C 0 I 17
e caePb3.Scfld02_0       2977130 22 +  4147112 I
e cb4.chrX              10063892  0 + 21540570 C
e caeSp111.Scaffold622    363724 34 +   386604 I

a score=182.000000
s ce10.chrX              4725499 2 + 17718866 TT
s caeRem4.Crem_Contig0   1639175 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2977130 22 +  4147112 I
e caeJap4.Scaffold17934   117109 17 +   591668 I
e cb4.chrX              10063892 0 + 21540570 C
e caeSp111.Scaffold622    363724 34 +   386604 I

a score=-3297.000000
s ce10.chrX              4725501 603 + 17718866  
s cb4.chrX              10063892 493 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2977130  22 +  4147112 I
e caeJap4.Scaffold17934   117109  17 +   591668 I
e caeSp111.Scaffold622    363724  34 +   386604 I
e caeRem4.Crem_Contig0   1639177   0 -  4500979 C

a score=-516.000000
s ce10.chrX              4726104 2 + 17718866 --TG
s cb4.chrX              10064385 4 + 21540570 TCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1639177 2 -  4500979 --gg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2977130 22 +  4147112 I
e caeJap4.Scaffold17934   117109 17 +   591668 I
e caeSp111.Scaffold622    363724 34 +   386604 I

a score=-332.000000
s ce10.chrX              4726106 5 + 17718866 -AAAAA
s cb4.chrX              10064389 5 + 21540570 -GAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1639179 5 -  4500979 -aAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   117126 5 +   591668 AAAAT-
i caeJap4.Scaffold17934 I 17 C 0
e caePb3.Scfld02_0       2977130 22 +  4147112 I
e caeSp111.Scaffold622    363724 34 +   386604 I

a score=360.000000
s ce10.chrX              4726111 2 + 17718866 AA
s caeRem4.Crem_Contig0   1639184 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    363758 2 +   386604 aa
i caeSp111.Scaffold622  I 34 C 0
s caeJap4.Scaffold17934   117131 2 +   591668 GG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2977130 22 +  4147112 I
e cb4.chrX              10064394 0 + 21540570 C

a score=146246.000000
s ce10.chrX              4726113 1085 + 17718866  
s cb4.chrX              10064394 1017 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1639186 1146 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold622    363760 1133 +   386604  
i caeSp111.Scaffold622  C 0 I 151
s caePb3.Scfld02_0       2977152 1153 +  4147112  
i caePb3.Scfld02_0      I 22 I 1
s caeJap4.Scaffold17934   117133 1186 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-70450.000000
s ce10.chrX              4727198 181 + 17718866 TTGGGTC-------TTGTACTTAACAAAA-----------CTCTTTGCAACATTCCTCTT--------------------------TAAATTTTACAAAA------ACTTAGAATAGAACATGTTTTT------------CA------------TCAATTTTTCTTAC-------------AAAAAAATATACAT--------AGGAAA--------------------------------------------------------------------CAAAATTTACT--------------------GGATTTAGCAATCAGAGAAGGTTAATAAAATTGAGAAAACCA----------ATATTTATACCTTT----
s cb4.chrX              10065413 237 + 21540570 -----TTCT-TCCAATTAAGTGatcaaaattcaacttttcgtaACTTCAGCACTAAGTTTCATA----------------------TGAGTTTTTGAGAC----------AAGACCAAAtaattccttatttttcaga--ttatcgggaaa---tcaaattttttaacatgTTGgacaaaatagaaaatatacATTTCTGG--AAACAA--------------------------------------------------------------------CGTAATTTATTCTT------------TCGAAAGATCATCCTTTtgagaacaattttcaaacgTAGTAGAATTA----------GCAGTCAAACTC------
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1640334 173 -  4500979 -----TT-------GTGAAGTCATCAAAA-----------GTTTCATTAAGAGTAAGctg-atg----------------------tttatttttgacgc------cataaaaaacgaataaaaagtt------------taattGGGTCA-----AAACTTATGAATGAGTCTATTTAAATGGAGTTTTTGTGATCCTTGATAAACAA--------------------------------------------------------------------AGTAA------------------------------------ATCGatactaattttt--------------------------tcaaataatttc------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       2978306 344 +  4147112 -------------tgagaagtaataaaaa-----------agttcaatgaaacTAAGTCT-ATGCAGGAAATAGAAAGCGTGCTTTTTCATTAATGAAAGATCAGTCTGGAGGATGAGATAAGTTTTTTATACTGAGAACTAATTGAGAACTGCTCAATTTTATTAAGGTCactagtt---tcaaaagtttccggTTATAGATAGGCAATGAATTATGACTGGAATTTGACTGGAAGTTTCCTAAGGTTTTGATTTGAGTTTAAAGTAGCTGACGTTCGCAACTTCTCATTTTAGTTGCCTGGTCAGTAGACTAGGTAATCAGCGAAAATCcaccattttccaaaaattagtcTACCCTTGTTTCCATATTC------
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold17934   118319 183 +   591668 -------ttgtttgttgttgttattaAAG---------------------CGGcaaattgaaaa----------------------tgtttttttgatgA----------AATGTCAACTCAACTT--------------CAAG----------TCGAGTTTTGTCTTGCCTTTCATT-------ACTTACATGATTATATTTGTGTGG--------------------------------------------------------------------AGCTGCTTACTGCTTTTACTTTGGGTTGGTCGGATTtgataa------------------------aacaata----------aaaaatatattc--ctTG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    364893 151 +   386604 I

a score=-10750.000000
s ce10.chrX              4727379 15 + 17718866 ------TGAATT-------TTGAAA------------CTT
s cb4.chrX              10065650 26 + 21540570 ------TTTATT-------ATAAAATAA-GTATCTGACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1640507 16 -  4500979 ------tcagtt-------ttgaaa-----------acat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    365044 14 +   386604 ------TGAATT-------ATAGA-------------CAT
i caeSp111.Scaffold622  I 151 C 0
s caePb3.Scfld02_0       2978651 34 +  4147112 ------TGAATTCACGCACCTGGAACCATGTCTATGTCAT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   118502 15 +   591668 TGATGATAGATA-------CTC------------------
i caeJap4.Scaffold17934 C 0 I 26

a score=5516.000000
s ce10.chrX              4727394 59 + 17718866 ACGGTATATTG-CTCCAGAGCGA-GACCACTCCAAA---CTTCTGATCCTTC----TTGACAGCTTCT
s cb4.chrX              10065676 65 + 21540570 ACTGTAACAAAAATTCTATTCACTTTTGTCTCCCAG---TGCTTGATGACTCCTATTCAGTTGTTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1640523 63 -  4500979 actGTATAATGTTTCCAATGCAC-AATGTCCCCAAG---TATTCGATGATTTA-GTTCCGTGGATTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    365058 63 +   386604 ACTGTATAATG-GCCCAATGAAC-AGTGTCCCCAAG---AGTTCGATTCCTTGTTTTCGGTGACTTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2978685 66 +  4147112 ACTGTAACACG-ATCCAACGAGA-AGTAATCCCAAGTTCTGCTCAATTGCTTTTGTTCAACGACCTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   118517 26 +   591668 I

a score=209769.000000
s ce10.chrX              4727453 704 + 17718866  
s cb4.chrX              10065741 709 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1640586 703 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    365121 773 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2978751 707 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   118543 671 +   591668  
i caeJap4.Scaffold17934 I 26 I 391

a score=6652.000000
s ce10.chrX              4728157 54 + 17718866 CCCTCACAGAGTGTGAATGTGTTTGGACCATTTGACGGG-TGGGT--CGGGCCACCA--
s cb4.chrX              10066450 42 + 21540570 ----TA-------AAAATG----AGATTCAAACGACGAGATGGGTCGCGGGCCGCaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1641289 39 -  4500979 ----aa-------aaaacg----aaagtcATTTGACGAG-TGGGT--CGGGCCACcg--
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold622    365894 46 +   386604 ----cagagaat-gtGAT-----TGAGTCATTTGACGGG-TGGGT--CGAGCCATTCgg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2979458 48 +  4147112 ----CACAGAGTCGAGATG----GGAGCCATTTGACGGG-TGGGT--CGGGCCAccaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I

a score=-7248.000000
s ce10.chrX              4728211 36 + 17718866 CCCCATGTGTTGGCTCTGTC-GAAAATGGGCCCCATT--
s cb4.chrX              10066492 15 + 21540570 ---------aaaaaTCTTTC---------GACC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    365940 31 +   386604 --------tattcttttttcgaatgctgggttctttttc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2979506 27 +  4147112 --------tctcattttttc----tttcaaacccCCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I
e caeRem4.Crem_Contig0   1641328 22 -  4500979 I

a score=-3889.000000
s ce10.chrX              4728247 72 + 17718866 --------------CTACTACTTCTCATTAG-TTGGGATTGGATAAAAGC----------------ATTCGTACTGT----TGAAAGT---------------GAATTTAAAAAAAAGGT-CA
s cb4.chrX              10066507 78 + 21540570 -------CTCCTTCTCCTC---TGTTAGAAT--------------AGAGC----------------TACCGTATTGTTTTATGGGATGAAAGTCAATTTGCGAAATTG----GACAAGGTAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1641350 82 -  4500979 CCACAATGTCCCTTTAATTAGGTGTcagcatttcaaaaaaggataaAAGC----------------TTTCGTACAGT----TGGGATG---------------GGCTA----GGAAAGGT-C-
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold622    365971 69 +   386604 --------------aaattgggTGTCATTTA-CTCAAATTGGATGAAAGC---------------ATTTTGTACTGT----TGAGAAT---------------GTGTT----GAAAAGGT-CA
i caeSp111.Scaffold622  C 0 I 147
s caePb3.Scfld02_0       2979533 84 +  4147112 --------------TAATTAGGTGTCATCCG-TTTGGAGTggacaaaagaaaatgaactaATAGGATTTCGTACAGT----TGGAAAT---------------GGGTT----GAAAAGGT-CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I

a score=255.000000
s ce10.chrX              4728319 19 + 17718866 GTGAAAC---------A-AAAATTGAATC
s cb4.chrX              10066585 29 + 21540570 ATGAAACCACCACCATTGtaaatggaatt
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig0   1641432 20 -  4500979 ATGAAAC---------TGCAAATGGCATA
i caeRem4.Crem_Contig0  C 0 I 272
s caePb3.Scfld02_0       2979617 17 +  4147112 -TGAGCC---------T-CAAATGGGAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I
e caeSp111.Scaffold622    366040 147 +   386604 I

a score=0.000000
s ce10.chrX              4728338 4 + 17718866 AGTT
e caePb3.Scfld02_0       2979634 0 +  4147112 C
e caeJap4.Scaffold17934   119214 391 +   591668 I
e cb4.chrX              10066614 85 + 21540570 I
e caeSp111.Scaffold622    366040 147 +   386604 I
e caeRem4.Crem_Contig0   1641452 272 -  4500979 I

a score=-433.000000
s ce10.chrX              4728342 33 + 17718866 CTCCGCTATACATTACAATTAACACAAGAGCAG
s caePb3.Scfld02_0       2979634  6 +  4147112 ---------------------------GAGCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I
e cb4.chrX              10066614 85 + 21540570 I
e caeSp111.Scaffold622    366040 147 +   386604 I
e caeRem4.Crem_Contig0   1641452 272 -  4500979 I

a score=-21927.000000
s ce10.chrX              4728375 309 + 17718866 GATAAAAA---------------------CTGAAACATTTTCGAAATTAGTGAGCCGGCA----ATTCTTCATGTAGAGTATATAACTAAAATA---TTTGAAGTA--------CGGTAAATGGGGAA-------------------TTAAC------TTGAA--GGTTTTGTGAGGTTTATCAGTTAGGAAATATTTGAAAA----ATAACTCATATGTTGCTAAAATGACTTGGTAAAGTTTTTAG----------TAAAATTTTTAAAAACTTTTACATAATAAAGCACACACTGGGAA----------CAATCTTTAAA-----ATTTGCCAAAACGTTTATAGAAAATTTAGAAATTCGCCAAAACTTTGACTGGAAA-------------------TGTTAAAAAATCTACAAA----
s cb4.chrX              10066699 362 + 21540570 GATAAAAAGTTGCCatcttttttttagttccaCGATCTTTGCAGAATTAATCAGCAAGCAacagattttt-----ggattaaCTTATCAAAGCATTTTTTGACGAGGGCATTATTTTAGATTGGGAGGAAATATTTGAGTTTAATTCTGAATGAGGAATTGAAAGGAAGTAGTAAA--------------AAATatagagaga----agaa-------------aaaaataaaacttcactttttcagtttcagctttttttatCGTTCATAGATTCTCGGTT-------GTTTATATGAAACTCCTGTTCTTAATTCA---------ATTCCTTGAACAATTTATATTGGAAAAGTATTTCCGTCAAATTTCTG-TTGCAAA-----CTTCAACTGATTCTGATTAGTAAAACCATGGA----
i cb4.chrX              I 85 C 0
s caePb3.Scfld02_0       2979640 285 +  4147112 AGTAAAAAGGCGT---------------------------------------------GAAAAGACTCTT-------------TTACTAGAAGA-----TGACGaa--------taaaaaatgggagaaggTCTTATCATCTTTTCCTTCGT------TTTCCCTGCTTCTGCAAAATTCATCACCTA-GAAACAGAAGGAGATggtggaa-------------aaagagaa--------------------------tggaatgagaaaaaaattttggattcaaaaG-GGAAATAAGGAA----------GAATTGGGAGGAAGGTATGAACCGAATGAGGAAGAGCCGAAGAAAATGGGCggga---------ttgaaaaagaagatgtgaCACCttctttctcgaaaaa--atagaCAAA
i caePb3.Scfld02_0      C 0 I 64
e caeJap4.Scaffold17934   119214 391 +   591668 I
e caeSp111.Scaffold622    366040 147 +   386604 I
e caeRem4.Crem_Contig0   1641452 272 -  4500979 I

a score=-607.000000
s ce10.chrX              4728684 66 + 17718866 TTT--TAAGGGGGTTTTGCTCTGAT--------TTCCAGTCATTTTTGACTACATTGAAA----CTCAATTTAGATTGTA
s cb4.chrX              10067061 77 + 21540570 TATCGTAAAAACGTTCTACTTTTAGCctaaatatctcaatttctgtgagagatatcaaaatttcctcAACT---ACTGAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       2979925 64 +  4147112 I
e caeJap4.Scaffold17934   119214 391 +   591668 I
e caeSp111.Scaffold622    366040 147 +   386604 I
e caeRem4.Crem_Contig0   1641452 272 -  4500979 I

a score=-23680.000000
s ce10.chrX              4728750 403 + 17718866 TTAATTGTATTTAGACCAAACTTCCACCGGTACTT-----TTGGATAAATTA---ATAAATTT----GAAACTAAAAA-AAAACGGTGTTTTCAAAATTTGAAATTGTTGATTGACTAA------AAAATAGGAATAGTTTTCCGTTTTTTGTCTTCTTTTTCGGCATTTAAGCATACATGCATTTTTTCTAT---------GTAGA-GCCTGTCCCGAAAATTTTTT-TAA-GGTTGAGAAATTTATAGGTAAA---GGtaatttata---tttt----tatcaaa------aaaaaagttatttaaCA-AAACAACTTAT---AATTGTTTGCCAAAGA-----AGTACAGAAACGGTAGGACCCAGTTACTTCACAAACACCGATGTAATTTGTTTTGAAGT-AATATATAAATTTAACTGTATCATATCTCAAATCACTTTCAATCACT-TTG-TATC
s cb4.chrX              10067138 401 + 21540570 CTAATT--------ATTAtgttatcaccaatattttatcatttgacaaattgttgatatttttcacagaaaacaaaat-aatagAGCG----CAA------ACACTACGGTTTGActgggcttctattataggaaACG-----------CAgtattatttttcatgtttcaaaaactactgtgTTTCCTCTAATGGAAACCCATGGGctcctatttttcaacttcctcCTGTGGGTGGACTAATAT-TAGAGAAATCGATCAAATTATAaggttttctgtttttaacTGGTCAGGGATAGTTATTAAACGCCAAGAAATAACGGAAATTGCCAGAAAAATAGCCAGGGTGGACTTCTActagaggtgggct-----tcaaata--gaggcggtttctattagagtaaatacggtaacttgatt-----------------acagaaaaacatt-ttg-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2979989 258 +  4147112 CCAAT---------------------CCGAC---------TTTGAGAAATCGTCCGTcacttgttttgaaattgggatCGAGAGAG---------------------------------------ATGAGAGGAA---------------------------CGTGTACTCAAAA---------------TAAGGGA-----ATGGA----------------------TGT-GGCGGTCGAGTAT-------GACctgtcattttgaa---tttcttggtTACAAT------GGAACTGTCATGTAGCACAGTTAGCTTTTG--AGTT----GAAAAGGACACATAGTACGCAAGTGCCagaaaccgat----------------------tttttcctcaaaaaaacaataaaattgaaat-----------------attcccAACCTCTATTGg----
i caePb3.Scfld02_0      I 64 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I
e caeSp111.Scaffold622    366040 147 +   386604 I
e caeRem4.Crem_Contig0   1641452 272 -  4500979 I

a score=1081.000000
s ce10.chrX              4729153 19 + 17718866 ATATCACTTTC--AAAACAGA
s caeRem4.Crem_Contig0   1641724 19 -  4500979 ATATCAAGTTC--AAAATAGT
i caeRem4.Crem_Contig0  I 272 C 0
s caePb3.Scfld02_0       2980247 19 +  4147112 --gtaaagttttgaaaacaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I
e cb4.chrX              10067539  0 + 21540570 C
e caeSp111.Scaffold622    366040 147 +   386604 I

a score=-10935.000000
s ce10.chrX              4729172 81 + 17718866 CAAAAAATATTTCAAAAAATATTTTTA-AGGAA---GTT--AAACAATCCAACAAACTGTTGCAGAC----AATAAA--AACTAGAATCTGGT
s cb4.chrX              10067539 50 + 21540570 ----------------------ctcCC-GAAAATATGCCAGTAAC------------TTCTATATCCataaaacaag--aag---aa---gaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1641743 59 -  4500979 -------------------TGACTCTA-AAACACA-GTTAGGAACAAAAC----AAATGTtacaatc----aacaaa--aagtccag---aga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    366187 78 +   386604 CAGAAGAAGCTCAAGGAAACATTTCCCGAGGCAAA-GCC--TAACAATAC----CAAAGTTGCAATT----TACAAA-TAAGTccag---aga
i caeSp111.Scaffold622  I 147 C 0
s caePb3.Scfld02_0       2980266 67 +  4147112 ------------atataaatattttcc-aaacaaa-atc--tgaaaatac---acAATGTTGCAATC----AACAGACTTAGTccag---aga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   119214 391 +   591668 I

a score=203465.000000
s ce10.chrX              4729253 431 + 17718866  
s cb4.chrX              10067589 471 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1641802 464 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    366265 480 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2980333 480 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   119605 466 +   591668  
i caeJap4.Scaffold17934 I 391 I 981

a score=111628.000000
s ce10.chrX              4729684 466 + 17718866  
s cb4.chrX              10068060 587 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1642266 545 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 208
s caeSp111.Scaffold622    366745 546 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2980813 536 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   120071 981 +   591668 I

a score=-984.000000
s ce10.chrX              4730150 12 + 17718866 ATTTT-TTTAAAG-------
s cb4.chrX              10068647 13 + 21540570 ATGTTGTTTAAAT-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    367291 14 +   386604 ------TTTCAATTCTAAGG
i caeSp111.Scaffold622  C 0 I 145
s caePb3.Scfld02_0       2981349 14 +  4147112 ------TTTCATTTCCAAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=-1910.000000
s ce10.chrX              4730162 72 + 17718866 CCTTAAGCAGACACAGTTTGTAGACTTTTGAAA--TGAATAAAGAGACAGAAAATGT-TTAAAAAAATCAGAGAA
s cb4.chrX              10068660 61 + 21540570 ---------GATTGATGTCGTTCAGGTTAGAAAGGTGAATCAAGGGA---CTACTGTATTGGGAACATTACAG--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2981363 53 +  4147112 -------------------ATTCGTTTTTAAAA---GAATCGAAGAAGttgtacttttttcaaaaaatgagaaaa
i caePb3.Scfld02_0      C 0 I 331
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=713.000000
s ce10.chrX              4730234 61 + 17718866 GTGAAATGTTCCAAAATTGTTCATTGAATTTGTTT---ACATTTTTT---AATCTGAAAAAAGTAGC
s cb4.chrX              10068721 63 + 21540570 ----TATGTTTTCTGATAGTTTctctaatatttttgaaacctctcttgaaaattcgaagaaatcaGC
i cb4.chrX              C 0 I 127
e caePb3.Scfld02_0       2981416 331 +  4147112 I
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=0.000000
s ce10.chrX              4730295 86 + 17718866 AGCCTACTGGAACTAACAAAAAACTTTGAAAGCCTGTGCACCAAAAATGTGAAGGTGGCTCAGGCTCACAGAAAAAGCACATACTG
e caePb3.Scfld02_0       2981416 331 +  4147112 I
e caeJap4.Scaffold17934   120071 981 +   591668 I
e cb4.chrX              10068784 127 + 21540570 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=-844.000000
s ce10.chrX              4730381 246 + 17718866 TCAGAGTTTAAACGAAAATGGGCACGGAATTGCTACAGAAAAGTGATTAAAGTTGGCGGAGAAATTGTGGCAAAATTC---CAAGTTATAAATCAATTTTTCCAGCCCAAATTCTGGCTTC----CGAATCGAAACAGTGCCTTCTGAA-----------TAGTTCTTCAAAATATGACACTACAAAT----AACTTAGCAG-------TAAAGTGAGCCTGAAATTGTTCAGGTCACTTTTTATCTTAACTAGTTTTTCTCCATCTAGTTCTGA
s cb4.chrX              10068911 246 + 21540570 tcaaggttcAGATTAGACTGTTTA-GACActtcta---aaaactga--aaaatcagc----------tGGCCAGCTTCAATCGAG--GTAAACCAGTATCAGTATCAGAAATTAAGTTTTCAGtgcaaacaaaaacaattttcaaagaataaaACAGATGTAACTCGTCTGAAACTGGCAA-GCAGAtgttgaagttttcagaagtgTCTAGAGtga-cttaaaaatttttaga---------attttgtttgattttacTAGAGCCGGCACAGA
i cb4.chrX              I 127 I 252
e caePb3.Scfld02_0       2981416 331 +  4147112 I
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=0.000000
s ce10.chrX              4730627 261 + 17718866 TTTCAAGATGTTCTAGAACCTGGATTGTTTTAAACCACACTTCTTGTGAAAATCTTAAGTTGTTCCCAGGTTTACAATGCGCCAAAGATTAGACGTGGAAAAATTCAGCTAGATATTGACCTGAAAGCCATTCAGATCAACTTTTTCTAGTTCAAAGTGATCGTCTGTTGCTGAACCCTTTGTGCTTAATAGTTTTAAGGCACTAAACCTAAATGTGAGCTGAAAATATTATTGCATGCTATAGTAATATACTGTAAAAAA
e caePb3.Scfld02_0       2981416 331 +  4147112 I
e caeJap4.Scaffold17934   120071 981 +   591668 I
e cb4.chrX              10069157 252 + 21540570 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=-1138.000000
s ce10.chrX              4730888  91 + 17718866 CAGCCTTATTGTT----------------------------GAAAATTAGTTATTT---GAACTATCCCAATAGATTCACTTGTACAAAAACCAAAAAAAAAG--TGATTAG-ACCACGTG--------CAAA
s cb4.chrX              10069409 133 + 21540570 cagtttttttggttcCACCTTTTCCAATTACTTCGATTCGAGGAAAATAATTGGTTACAAACCAATCCCACTTATTTTTATCAGACAATTTCTGGGAGAGAGGAATGAGTAATACCGAgaggaatcagaaaaa
i cb4.chrX              I 252 C 0
e caePb3.Scfld02_0       2981416 331 +  4147112 I
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=-3910.000000
s ce10.chrX              4730979 59 + 17718866 AATACGATCAAGATTCATCCA-----AAGGTATGAGAAACTAATAAAACGCTCGACAAGAT---TGA-------------
s cb4.chrX              10069542 58 + 21540570 aa-------aacaattgagagTTTAGTAACTACAGAAAAC------ATCAATAGAAGAACTttgtaaaata---------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       2981747 64 +  4147112 AACCTGATCAAAAACCGACCACCGAGCAGGTATGAAAGGT-------------GAAGAAAT---TGAACTAGATCTACGG
i caePb3.Scfld02_0      I 331 C 0
e caeJap4.Scaffold17934   120071 981 +   591668 I
e caeSp111.Scaffold622    367305 145 +   386604 I
e caeRem4.Crem_Contig0   1642811 208 -  4500979 I

a score=3022.000000
s ce10.chrX              4731038 29 + 17718866 GCAATAGATCAA-GCAAGCAGTGCCCCGAT
s cb4.chrX              10069600 16 + 21540570 ---------aaa-atagaaggTG----AAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1643019 28 -  4500979 GCAATAGATCAA-GCAAAAGGTG-CTCAAT
i caeRem4.Crem_Contig0  I 208 C 0
s caeSp111.Scaffold622    367450 30 +   386604 GCTATGAATCAATGAAGCAAATGCCCCAAC
i caeSp111.Scaffold622  I 145 C 0
s caePb3.Scfld02_0       2981811 30 +  4147112 GTAATATCTCAACGGAGCAAATGCCCCAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   120071 981 +   591668 I

a score=68473.000000
s ce10.chrX              4731067 182 + 17718866 AATATTTC--------ACTTTCTTGTAGAACGGTCATAATTCAAACGATTG--GTTCACTCACACATACACAGAGCACACGC---------TCTAACTACTTCATAGC------TGACAGATTGCG--G-G---ATGAAATATGAAAGAG-AATGTG--------------TGTGTGTGGGGGCACGGAAACTCAAATGAAGAACA---GGACCAACGTAATGAAATTAGC
s cb4.chrX              10069616 183 + 21540570 CATCCCTCCAACACAAATCTTTTTG---AACAGTCATAATTCAAACGATTG--GTGCACTCA----------GGGCTCACGC--TTCTCTTACTAACTACCTGA-------------CAGATTGAG----GCAAATGAAATATGAAGGGACAATGATTGGGAGCATACGTATGTGTATGTGCTCCCACAAC--------------TCGGGAGCCAACGTAATGAAATTAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1643047 166 -  4500979 AATATTTC--------ACTTTCCTGTATAACGGTCATAATTCAAACAATTG--GTGCACTCA-------------CTCACACGACGCTCGCTCTAACTACTTCATGGC------CAGCAGATTGAG----G---ATGAAATATGAAGGGG-AATGAT--------------TTTGTGTGTGGGAGCACGAA--------------ACAGAGTCAAACGTAATGAAATTAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    367480 174 +   386604 AATATTTC--------A----CCTGTAGAACGGTCATAATTCAAACAATTGGTGTGCACTCACA-------TGAGCACACGC---------TCTAACTACTTCAGGGC------GAATGGATTGCG----G---ATGAAATATGAAGGGG-AATgattgtg----------tgtgtgtggggGCACAGAAACTT--CTCAGGAACT---GAGCCAGCGTAATGAAATTAGT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2981841 173 +  4147112 AATATTTC--------ACTTTCCTGTAGAACGGTCATAATTCAAACAATTG--GTGCACTCATACCCCCACCGAGCACACGC---------TCTAACTACTTC------------GACGGATTGAG--GAG---ATGAAATATGAAGGAG-AATGAT--------------TGTGTGTGGGGGCACAGAAA-------GGAGAACTCAGGCGCCGGCGTAATGAAATTAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   121052 153 +   591668 AATATTTC--------ATTCTCCTGCCGAACGGTCATAATTCAAACAATTG--GTGCTCTCT-------------CAAACTA------------AACTACTCTGGGGCATTGGTTGACGACTTTTGCCG-G---ATAAAATATGATGATG-AG-GAT--------------TGTGTA----GGCTC-------------------TCGGGAGCAGGCGTGATAAAATTAGC
i caeJap4.Scaffold17934 I 981 I 400

a score=56112.000000
s ce10.chrX              4731249 261 + 17718866 CGACACGAGATAAA-AGT------------CACAGAATTTAG-----TTGTTTTTCCT--------------AACACAT---ACATTGATA---------CGGAAAATAAC--CTATTACA-----------------AGGACGAAAAATAAGGAAAACATAAAA-----TTTAAAACATAATTTTCATTTGGTGTTTGTAGGCATGTCTAGATGTTGTATATGCAAAAAAATC-GAGCTTCTT-----GATTTT---TC--TGCTATTATGC-TGGATTAGTCTGGTCAACTAAAAAATTTAACT-CGCTTGAGTGGTAAACCAAATAAAAACATGTATCC
s cb4.chrX              10069799 275 + 21540570 TGACACGAGGTGAGAAGAGGATTATCACC-CACACCACTCAAgagttttttttgctctgGTCCGGATTGTTTAACACATAACAAATTGCAAGCGAAGAACCGCAGAACAGA-TACGTTGGTT----------------GTTAGGGTTAGGGGGTTTCACGAAAAA-----tgtgaac----attttttctggGTGGTTTCATGca------------gc------------tcc-aa------------attttt---ttgctgcTAATATGCTTGGATTTAGTTGGTCAACTAAGAAATTTTGTCTCGCTTCAGTAGAAAACTGCTTGAAAACATACTTCC
i cb4.chrX              C 0 I 387
s caeRem4.Crem_Contig0   1643213 282 -  4500979 TGACACGAGGTGAG-AGAGGATCATCTTCAAACAGCAGTCAG-----TTTTTTGCTCT-----CGACACTTTAACACATAACAAATTGCAAGATAGAAGCCACAGAATGGG----ATTGAGT----------------ATAAGGGGAAATATGGATCAAGAATGAGAGTCCGCGAAC----A-TTTTTCTGGGTGGTTTCATGCAAGACAAGACACTGC------------TCC-CAGTTTTGCAATGCATTTCT---TTG-TGCTAATATGC-TGGTTTAAGTtggtcaactaaaaaatttgatc-CGCTtgactaaaaaa-----tgaaaacatgttTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    367654 294 +   386604 TGACATGAGGTGAG-AGAGGATCATCTTCAAACAGCAGTCG------TTTTTTGTCCA-------TCACTTTAACACATAACAAATTGC-AAGAAAGAACCGCAGAATGGGTTCTATTAGAGGGATAAGAGTATATGTATGAGTCAAAACGGGGGAGACCGAaca-----ttttcac---aa-tttttctgGGTGGTTTCATGCAAGACAACTTATTCC------------TTC-AAATTTTGC-----ATTGCTTTCTT--TGCTAATACAC-TGGTTTAGTTTGGTCAACTAAAATTTTCG-TC-CGcttgaataaaaaacgaattgaaaatatattt-c
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2982014 277 +  4147112 TGACATGAAGTGAG-AGAGGATCATCTTCAAACAGCATT--------TTTCTTGTCAC-------CCACTTTAACACATAACAAATTGCAAAGAAAGAACCGCAGAATGGG-ACTATTAGTGGGTTag----------atgattcaaaaagagga----cgaaca-----ttttcat----a-tttttctggGTGGTTTCATGCAAGACGAGACATTTC------------TTCGAAGTTTTGC-----ATTTCT---TC--TGCTAATATGC-TGGGTTAGtttggtcaactaaaaaatttgatt-cgcttgaataaaaaacgaattgaaaacatatttcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   121205 400 +   591668 I

a score=2435.000000
s ce10.chrX              4731510 34 + 17718866 TTCAACTTTTCGGGTTTGGAGAAA----AACGTAGGCG
s caeRem4.Crem_Contig0   1643495 26 -  4500979 --------GTTTTATTCCAGAGAA----AACGTAGGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    367948 33 +   386604 gtCTATTGGTGGGTCACCCAAAAA-----ACGTAGGCG
i caeSp111.Scaffold622  C 0 I 200
s caePb3.Scfld02_0       2982291 35 +  4147112 gTCAA---GTGGAAtaccaaaaaaggaagacgTAGGCG
i caePb3.Scfld02_0      C 0 I 283
e caeJap4.Scaffold17934   121205 400 +   591668 I
e cb4.chrX              10070074 387 + 21540570 I

a score=541.000000
s ce10.chrX              4731544 8 + 17718866 CATGTTCA
s caeRem4.Crem_Contig0   1643521 8 -  4500979 AATGTTCA
i caeRem4.Crem_Contig0  C 0 I 252
e caePb3.Scfld02_0       2982326 283 +  4147112 I
e caeJap4.Scaffold17934   121205 400 +   591668 I
e cb4.chrX              10070074 387 + 21540570 I
e caeSp111.Scaffold622    367981 200 +   386604 I

a score=0.000000
s ce10.chrX              4731552 748 + 17718866  
e caePb3.Scfld02_0       2982326 283 +  4147112 I
e caeJap4.Scaffold17934   121205 400 +   591668 I
e cb4.chrX              10070074 387 + 21540570 I
e caeSp111.Scaffold622    367981 200 +   386604 I
e caeRem4.Crem_Contig0   1643529 252 -  4500979 I

a score=433.000000
s ce10.chrX              4732300 38 + 17718866 TCTGAGAAAAAAACAAGATTCACAGGAA---CTCGTGTGAC
s caeRem4.Crem_Contig0   1643781 41 -  4500979 TCTgagaaaacctgaaaaatctcaaataatTCTGGTGTCCT
i caeRem4.Crem_Contig0  I 252 C 0
e caePb3.Scfld02_0       2982326 283 +  4147112 I
e caeJap4.Scaffold17934   121205 400 +   591668 I
e cb4.chrX              10070074 387 + 21540570 I
e caeSp111.Scaffold622    367981 200 +   386604 I

a score=-529.000000
s ce10.chrX              4732338 4 + 17718866 AAGT--
s caeRem4.Crem_Contig0   1643822 4 -  4500979 --GCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368181 4 +   386604 AAGT--
i caeSp111.Scaffold622  I 200 C 0
e caePb3.Scfld02_0       2982326 283 +  4147112 I
e caeJap4.Scaffold17934   121205 400 +   591668 I
e cb4.chrX              10070074 387 + 21540570 I

a score=600.000000
s ce10.chrX              4732342 1 + 17718866 G
s cb4.chrX              10070461 1 + 21540570 G
i cb4.chrX              I 387 C 0
s caeRem4.Crem_Contig0   1643826 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368185 1 +   386604 G
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2982326 283 +  4147112 I
e caeJap4.Scaffold17934   121205 400 +   591668 I

a score=98223.000000
s ce10.chrX              4732343 206 + 17718866 TGGTGTATGCTCGGTGTCTTTTCGATTAGGATCTGA-----------AATGTGGTATTGGTGTGGGAAGACCGCCGCGGGCAGGGAAC---AAAGGCGCAAAG--------------AATAG----------CAAAGCCAGT-AATGAATGCTCTGTGATGTCCCGATTACCCTAATCTCGGT--AAAAA-AAAAATACGACTG-------AAGAACATTTGCTAAACTTCTGCCATT-TGAG--------------CACTCCAATTTCA
s cb4.chrX              10070462 243 + 21540570 TGGTGTGTGCT-----CTTTTTCGATTAGGATCTCATGGTTGTATGGGGTATCGTG-------------------GGGGACAAGGAACA--AAtgggggagaagaagaaatgagtCTAAGAGAAATGAGAATAGGAGTCAGTAAATGAATGTTTTGTGATGTCTCGATTACCCTAATCTCggttaaaaaacgaaaatacgACCGGAG-AGCAAGGACATTTGCTCAACATCTGCCATTCGGAGCAGCCAGCGAAAACCactccaatttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1643827 205 -  4500979 TGGTTTGTGCTCAGTGCGTTTTTGATTAGGATCTCA------------ATGTTATT-------------------GGGGACCAGGAAGAGCAAtgacggaa----------------aaaagaaagaagaagaagagtcaGT-AATGAATGCTCTGTGATGTCTCGATTACCCTAATCTCGGT--AAAAACGAAAATACGACTGGAGCAGGAAGGACATTTGCTGAACATCTGCCAAT-GGAG--------------CActccaatttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368186 224 +   386604 TGGTGTGTGCTCGGTGTCTTTTCGATTAGAATCTAA------------ATGTTGTATCGGTGTGAAAGGATAA--GAGGACAAGgaacagaaaagaagagaat--------------ggcggagggaagaagaagagtcagT-AATGAATGCTCTGTGATGTCTCGATTACCCTAATCTCggt--aaaaacgaaaatacGACTGGAGCAGGAAGGACATTTGCTGAACATCTGCCAAT-GGAG--------------CActccaatttca
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2982609 204 +  4147112 TGGTTTATGCTCAGTG-CTCTACGATTAGGATCTGA------------AGGTTGTGTTGG---------------GGGGACAAGGAACataaagaaagaagaa--------------tgtgg------GACGAAGAGTCAGT-AATGAATGCTCTGTGATGTCTCGATTACCCTAATCTCggt--aaaaacgaaaataagaCTGGAGCAGGAAGGACATTTGCTGAACATCTGCCAAT-GGAG--------------Cactccaatttca
i caePb3.Scfld02_0      I 283 C 0
e caeJap4.Scaffold17934   121205 400 +   591668 I

a score=102686.000000
s ce10.chrX              4732549 193 + 17718866 ATTCCATTG--CCGA-CGTAGTGTTGGGGATGTGGTTCTGCAGAGACAGAA-------------------TGGAAGGAAGTTGTGGTGCATATCACTAAAAAG--CAAACCATCGTTTCGTC-AAACTAATCCCAAAGAAA-GTCTCTGCGG---G-GGAAGGGGACGAAACGGCAAGAACGGACGTACCCAACTCG--TCGCTGTTGTTT----CAATTGCACTTTTT
s cb4.chrX              10070705 210 + 21540570 atttcattgcACCGAGCGCAGTT-------TCGGA--ATGATGCGACTGACACTGAACCCTAGGCAAAGTAGGAAGGAAGTTGTGGTGCAtatcagaaaaaaggagaaaccATCGCTTTGCC-AAACTAATCCCAAAGAAATGCCTTT-TGCGCGG-ACA--AAAATGTATC-ACGGGAACGCGCGTACCC-ACACAA-GCGGTGTGTTTT--AAATAATGAACTTTTT
i cb4.chrX              C 0 I 1242
s caeRem4.Crem_Contig0   1644032 181 -  4500979 atttcattg--cCGA-CGTGCTC-------TGCGG--CTGACGCGACCGAA-------------------AGGAAGGAAGTTGTGGTGCATATCACAAAAACG--CAAACCATCGTTTCGTC-AAACTAATCCCAAAGAAA-GACTTT-TGC---G-GCA--AAAATGCAAT-GCAGGAACGCGCGTACCCAATACAC-TCGTTGTTGTTT----CCGATGAACTTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368410 186 +   386604 atttcattg--cCGA-CGTGCAGTGGGGGATGCGG--TTGACGCGACCGAA-------------------AGGAAGGAAGTTGTGGTGCATATCACAAAAACG--CAAACCATCGTTTCGTC-AAACTAATCCCAAAGAAA-GTCTTTGCGG---G-------AAATGCAAT-GCAGGAACGCGCGTACCCAATACTCATCGTTGTTGTTT----CCGATGAACTTTTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2982813 190 +  4147112 atttcattgcACCGA-GGTGCCA-GTGGGATGCGG--CTGACGCGACCGAA-------------------AGGAAGGAAGTTGTGGTGAGTATCAGAAAAACG--CAAACCATCGCTTCGTCAAAACTAATCCCAAAGAAA-GTCTTTGTGC---G-GC---AAAATGCAAT-GCAGGAACGGGCGTACCC-ATACGCATCGTTGTTGTTT----CCGATGAACTTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   121605 181 +   591668 ATTTCATTG--CCGA-CGTGCAG----------GG--TAAAtgggaatttt-------------------ggaaaacggGAAGTGGAGAATATCAGAGAAACG--CAAACCGTCGCTTCATC-AAACTAATCCTGAAGAAA-GCCCTTGTGC---GCACGAGGAAATGCAGC-----GAACGGGTGTACCC--TACGGGAAGTTGTTTATTTCGTCCGGTGAACTTTTT
i caeJap4.Scaffold17934 I 400 C 0

a score=13512.000000
s ce10.chrX              4732742 31 + 17718866 ACTATGTTCGGTGCCAAAAAAATGACAAATT
s caeRem4.Crem_Contig0   1644213 29 -  4500979 ACTATGTTGAGTGCT--AAGAATGACAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368596 29 +   386604 ACTATGTTGAGTGCT--AAGAATGACAAGTT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2983003 29 +  4147112 ACTATGTTGAGTGCT--AAGAATGACAAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   121786 21 +   591668 ACTACGC----------CCAAATGATTAGTT
i caeJap4.Scaffold17934 C 0 I 41
e cb4.chrX              10070915 1242 + 21540570 I

a score=5712.000000
s ce10.chrX              4732773 29 + 17718866 TTTTCG----TGTTTCTCAGAATCG-----------GTGATCGA
s caeRem4.Crem_Contig0   1644242 44 -  4500979 TCTCAAGTgatgtttccagaaaaaagaatggacTGGattattga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    368625 41 +   386604 TCTTTGGTGATGTTTCCAGGAAAAAAGGTTGAT---GTGAtcga
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2983032 41 +  4147112 TCTTCGGTGATGTTTCCAGGCACAAAAGTTGAC---GTGACCga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   121807 41 +   591668 I
e cb4.chrX              10070915 1242 + 21540570 I

a score=18024.000000
s ce10.chrX              4732802 218 + 17718866 TGTTTTTTGATTTCT-GACTTCATGGTGC----CCAATGCAACCTGCT------GAATGGGG----------------------GATGATAAACATTCC--------------GTTCTGTTTATC--------AGCAAGTGCTAGGAACCGTTTCTATATTGATATCAGATACCTTTGCAGTTTACAACGTATTAGGTTACATCC------CTACAAAAGGCGTGATTAGAGAGTGCGTAAACACCATATTCTTATCTTTGACCTCTGAT------TGTATTCCA
s caeRem4.Crem_Contig0   1644286 231 -  4500979 tgatttttgatttttcaacttcc----------------gAACCTTCC------AAAATAGTTCG-------------------ACTCATaaacaattc-aattttgtttatAATTTTGTTTGTCAAGAACTCTGCAAGTATCTTCA-----TTCTCTACTGATAGATGACACCTCAATCGTTTATATGGTGTAGGGTTACAGATACACAACTATATAAGGGGTGATTAGGGGA-AAGTAAACATCACATTCTTATCGTTGACCTCGACT------ATTCCCCCA
i caeRem4.Crem_Contig0  C 0 I 68
s caeSp111.Scaffold622    368666 222 +   386604 tgatttttgattttttgacttgCT------------TCATGGATTCCA------AAGGGAGGTTCG-----------------GGGGTATAAACattcc--tttttgtttat-tcACTGTTTATC----ACCCTGTCATTTCTATCA-----CT-GTAGTTGATAGCTGATACCATTATAGTTTACAAAGTATTAGGTTACAAGT------AGATATAAGGTGTGATTAGGGCA-ACGTAAACA-CACATTCTTATCGTTGACCTCGACC-------TTCTCTCA
i caeSp111.Scaffold622  C 0 I 5
s caePb3.Scfld02_0       2983073 217 +  4147112 taatttttggttttttgacttccC------------ATGCAAAATCCAGAATAGAAGATAGTTTT-------------------GAATCTAAACAATA--------GATTGT-TTATTGTTTATC----TTACGG----TTTTGTGG-----TT-TGTGCTGATAGCTGATACTTTGATAGTTTACAAAGTATTAGATTACAGGT------CTATATAAGGCCTGATTAGGGCA-ACGTAAACA-CACATCCTTATCGTTGACCTCGACC------ATTCTATCA
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17934   121848 265 +   591668 ggatttttgattttccatCTCTTGAAAACAATTCAGTTGCATCTTCCAGTT---AAAAAAGTTGAGACTTTGAAACTTAATATAAATCATAAACAATTCCGTGTTCACTAGT-ACGGACCTGGTC----TCCATG-AAATACACGTT-----CT-TCACCTGATAAC-GATAC-TTGATAGTTTATCACGTATAAGGTTACAGATAGACCTACATAAATAGCATTTTCAAGGCA-AGGTAAACA--GAATCGTTATCATTGACCTCTACAGGGTTGTTCGTTTCG
i caeJap4.Scaffold17934 I 41 C 0
e cb4.chrX              10070915 1242 + 21540570 I

a score=-5704.000000
s ce10.chrX              4733020 65 + 17718866 AAAATATTGAGCGTATATAGCATTCTT---ACTTAAATAGTATCTAGGAAGCATGAACCTCCAGGTCA---
s caeSp111.Scaffold622    368893 61 +   386604 AATAGATTAGGAACGAACaatcttcattcattctaaAAACCA---ATGAGGAGAATAccca----ttt---
i caeSp111.Scaffold622  I 5 C 0
s caePb3.Scfld02_0       2983304 58 +  4147112 AAGACATTGCGTTCAAACGATCATCGT---CGTGAGagacaa---atgaagaaaatacctc----ttt---
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17934   122113 53 +   591668 -----------TTTATTTGAGATCAGT---CTATAACGACTAGTCACTATGAAAAAATATG----TCAAGA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10070915 1242 + 21540570 I
e caeRem4.Crem_Contig0   1644517 68 -  4500979 I

a score=16047.000000
s ce10.chrX              4733085 63 + 17718866 TTTTCCTATTTCTCGGTC------TACTTGTCATTTATTCTTCCCAAGATTGTGCATGGAATGTAAGTT
s caeRem4.Crem_Contig0   1644585 63 -  4500979 ------TTATTCTCTGTCTATATCTGCAGATTGAGAAATCACTTCAAGATTGTGCTTGGGACGTGAGTG
i caeRem4.Crem_Contig0  I 68 C 0
s caeSp111.Scaffold622    368954 69 +   386604 tatttttattttttcttctaaatatATTATTCAATGAGTCAGTGCAAGATTGCGCGTGGGAAGTTAGTT
i caeSp111.Scaffold622  C 0 I 34
s caePb3.Scfld02_0       2983362 63 +  4147112 tcttcctaattttttctc------tattcttcaATGAATCTCTACAAAATTGTGCCTGGGATGTAAGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   122166 63 +   591668 TTTTCCTATTTATTTCGA------CTTTATTCTGCAAGACTGTTCAGGATTGTGCATGGAATGTGAGTT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10070915 1242 + 21540570 I

a score=207.000000
s ce10.chrX              4733148 1 + 17718866 G
s caeRem4.Crem_Contig0   1644648 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2983425 1 +  4147112 G
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17934   122229 1 +   591668 G
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I

a score=302.000000
s ce10.chrX              4733149 2 + 17718866 AA
s caeRem4.Crem_Contig0   1644649 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 22
s caeJap4.Scaffold17934   122230 2 +   591668 AG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2983426 23 +  4147112 I
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I

a score=217.000000
s ce10.chrX              4733151 10 + 17718866 CTAGAGCATT
s caeJap4.Scaffold17934   122232 10 +   591668 TTGAAAAATT
i caeJap4.Scaffold17934 C 0 I 707
e caePb3.Scfld02_0       2983426 23 +  4147112 I
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I
e caeRem4.Crem_Contig0   1644651 22 -  4500979 I

a score=0.000000
s ce10.chrX              4733161 682 + 17718866  
e caePb3.Scfld02_0       2983426  23 +  4147112 I
e caeJap4.Scaffold17934   122242 707 +   591668 I
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023  34 +   386604 I
e caeRem4.Crem_Contig0   1644651  22 -  4500979 I

a score=191.000000
s ce10.chrX              4733843 2 + 17718866 TC
s caePb3.Scfld02_0       2983449 2 +  4147112 tc
i caePb3.Scfld02_0      I 23 C 0
e caeJap4.Scaffold17934   122242 707 +   591668 I
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I
e caeRem4.Crem_Contig0   1644651 22 -  4500979 I

a score=632.000000
s ce10.chrX              4733845 9 + 17718866 AAAATAACC
s caePb3.Scfld02_0       2983451 7 +  4147112 aaaaaaa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   122949 9 +   591668 aaaaaaatc
i caeJap4.Scaffold17934 I 707 C 0
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I
e caeRem4.Crem_Contig0   1644651 22 -  4500979 I

a score=482.000000
s ce10.chrX              4733854 5 + 17718866 ATAAC
s caeRem4.Crem_Contig0   1644673 5 -  4500979 ATAAT
i caeRem4.Crem_Contig0  I 22 C 0
s caePb3.Scfld02_0       2983458 3 +  4147112 --aac
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   122958 5 +   591668 ttcAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10070915 1242 + 21540570 I
e caeSp111.Scaffold622    369023 34 +   386604 I

a score=-334.000000
s ce10.chrX              4733859 4 + 17718866 AATC
s caeRem4.Crem_Contig0   1644678 3 -  4500979 GAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    369057 3 +   386604 AAT-
i caeSp111.Scaffold622  I 34 C 0
s caePb3.Scfld02_0       2983462 3 +  4147112 att-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   122963 3 +   591668 AAT-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10070915 1242 + 21540570 I

a score=277963.000000
s ce10.chrX              4733863 522 + 17718866  
s cb4.chrX              10072157 466 + 21540570  
i cb4.chrX              I 1242 I 21
s caeRem4.Crem_Contig0   1644681 537 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 81
s caeSp111.Scaffold622    369060 502 +   386604  
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0       2983465 596 +  4147112  
i caePb3.Scfld02_0      C 0 I 83
s caeJap4.Scaffold17934   122966 507 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-35360.000000
s ce10.chrX              4734385  94 + 17718866 ATAAGGATTAAATGAA-------------------------------------------------------------------------AAATGAGTAACGTGAAAAAATAAGCAATGAGTCACGATGTATTATTAAGATTTTATATACTACGTTTTAT------------------------------------TTCAAACC--------
s cb4.chrX              10072644  26 + 21540570 ATAGAAGTCAAATAAG-------------------------------------------------------------------------------------------------------------------------------------GAttttt---------------------------------------ttA-------------
i cb4.chrX              I 21 C 0
s caeSp111.Scaffold622    369574  37 +   386604 ATATGAGTCAACTAAG-------------------------------------------------------------------------------------TGACGA------------------------------------------tgtcttt---------------------------------------ttgaaaga--------
i caeSp111.Scaffold622  I 12 C 0
s caePb3.Scfld02_0       2984144 197 +  4147112 ttgtagatcaaataaGAAGCTCCGACTAAAAATCTCAGAGCGTGTGCTCATCAAAGTTGatataaaaacataaatttgcTCGAATTTTCCAACATAAACTTTGATGACATTACTTCAGAA-cttgatcaaaaattcagctcttttattttgttttttgtggtttcGA-----TAGCTCagaagatttgaataaaattgaaatt--------
i caePb3.Scfld02_0      I 83 C 0
s caeJap4.Scaffold17934   123473  74 +   591668 -------------------------------------------------------------------------------------------------------------------------------TTGTTGTTCAAGTTTTTA----TATCTATTGCATTTCTGACCTATTATTTTAGAGAACTAGT------TTAGAAATACATAATC
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1645218  81 -  4500979 I

a score=311373.000000
s ce10.chrX              4734479 489 + 17718866  
s cb4.chrX              10072670 480 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   1645299 482 -  4500979  
i caeRem4.Crem_Contig0  I 81 C 0
s caeSp111.Scaffold622    369611 487 +   386604  
i caeSp111.Scaffold622  C 0 I 12
s caePb3.Scfld02_0       2984341 512 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   123547 475 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4734968 27 + 17718866 tactccattgggttgccagaaatttta
e caePb3.Scfld02_0       2984853  5 +  4147112 I
e caeJap4.Scaffold17934   124022  0 +   591668 C
e cb4.chrX              10073150 10 + 21540570 I
e caeSp111.Scaffold622    370098 12 +   386604 I
e caeRem4.Crem_Contig0   1645781  0 -  4500979 C

a score=-8410.000000
s ce10.chrX              4734995 88 + 17718866 atattcgagaaatagcgaaattacccatttctagaaattttgaaaactgactatgaccttaattaccgattgccagcaattctgaaaa-
s cb4.chrX              10073160 16 + 21540570 -----------------------------------AATTTCGgag-------------------------------------tgaaaa-
i cb4.chrX              I 10 I 6
s caeSp111.Scaffold622    370110  9 +   386604 ------------------------------------------ata-------------------------------------tgaaaa-
i caeSp111.Scaffold622  I 12 C 0
s caeJap4.Scaffold17934   124022 28 +   591668 ----------------------------------gagt----aaaatgaaataaaactt-----------------------tgaaaat
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2984853  5 +  4147112 I
e caeRem4.Crem_Contig0   1645781  0 -  4500979 C

a score=-1886.000000
s ce10.chrX              4735083 25 + 17718866 ccggcaataacctaaataactgact
s caeSp111.Scaffold622    370119  1 +   386604 c------------------------
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934   124050 10 +   591668 -----------ctaaataaat----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2984853  5 +  4147112 I
e cb4.chrX              10073176  6 + 21540570 I
e caeRem4.Crem_Contig0   1645781  0 -  4500979 C

a score=0.000000
s ce10.chrX              4735108 6 + 17718866 ttcaga
e caePb3.Scfld02_0       2984853 5 +  4147112 I
e caeJap4.Scaffold17934   124060 0 +   591668 C
e cb4.chrX              10073176 6 + 21540570 I
e caeSp111.Scaffold622    370120 0 +   386604 C
e caeRem4.Crem_Contig0   1645781 0 -  4500979 C

a score=-5544.000000
s ce10.chrX              4735114 38 + 17718866 atttctaaaaaccggcaattgccTTAATAAGAAATTTT
s caeRem4.Crem_Contig0   1645781 23 -  4500979 ATTTCTG---------------CTTAACCAGAAAACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    370120  9 +   386604 -----------------------------aaaaaattt
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2984858  2 +  4147112 ------------------------------------TT
i caePb3.Scfld02_0      I 5 I 4
s caeJap4.Scaffold17934   124060  7 +   591668 -------------------------------acatatt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10073176  6 + 21540570 I

a score=-31.000000
s ce10.chrX              4735152 13 + 17718866 TGGatttttttta
s caePb3.Scfld02_0       2984864  2 +  4147112 -----------CA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   124067 13 +   591668 tcaATTTCTATTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10073176  6 + 21540570 I
e caeSp111.Scaffold622    370129  1 +   386604 I
e caeRem4.Crem_Contig0   1645804  0 -  4500979 C

a score=-1984.000000
s ce10.chrX              4735165 26 + 17718866 aaatttttaattctgtaaatataatt
s caeRem4.Crem_Contig0   1645804  2 -  4500979 --------TA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2984866 15 +  4147112 AAATGTCgtattttg-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   124080  0 +   591668 C
e cb4.chrX              10073176  6 + 21540570 I
e caeSp111.Scaffold622    370129  1 +   386604 I

a score=0.000000
s ce10.chrX              4735191 6 + 17718866 ttgatt
e caePb3.Scfld02_0       2984881 0 +  4147112 C
e caeJap4.Scaffold17934   124080 0 +   591668 C
e cb4.chrX              10073176 6 + 21540570 I
e caeSp111.Scaffold622    370129 1 +   386604 I
e caeRem4.Crem_Contig0   1645806 0 -  4500979 C

a score=-5676.000000
s ce10.chrX              4735197 79 + 17718866 atttttataaatttaGACTAATATATTGTGTACCAGGGGTTGGTACCCTATACGGCAAAATCA-AAAC-AACTTTAGGTTG
s caeRem4.Crem_Contig0   1645806 10 -  4500979 -----------------------------------------------------------ATCATGTACT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2984881 10 +  4147112 ---------------------------------------------------------aagtca-aaac-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   124080  0 +   591668 C
e cb4.chrX              10073176  6 + 21540570 I
e caeSp111.Scaffold622    370129  1 +   386604 I

a score=-4149.000000
s ce10.chrX              4735276 26 + 17718866 GTATACAATTATTTTTAAGCTTTATG--
s caeRem4.Crem_Contig0   1645816  8 -  4500979 --------------------GTTTGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    370130  1 +   386604 -------------------------g--
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0       2984891  1 +  4147112 -------------------------G--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   124080  0 +   591668 C
e cb4.chrX              10073176  6 + 21540570 I

a score=100.000000
s ce10.chrX              4735302 2 + 17718866 T-T
s cb4.chrX              10073182 2 + 21540570 t-t
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1645824 2 -  4500979 T-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    370131 3 +   386604 tat
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2984892 2 +  4147112 T-T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   124080 0 +   591668 C

a score=457345.000000
s ce10.chrX              4735304 914 + 17718866  
s cb4.chrX              10073184 925 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1645826 924 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    370134 909 +   386604  
i caeSp111.Scaffold622  C 0 I 53
s caePb3.Scfld02_0       2984894 918 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   124080 948 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-22852.000000
s ce10.chrX              4736218 79 + 17718866 TTGTTGTTATTCAAGGCAACTCAACTATTGAGAGTCGTAAATCAATCATAAA----TGTTCAATCTTAAAATTAGGAGATTTA
s cb4.chrX              10074109 52 + 21540570 ---------------ATATTTTATTGTTCGAAAGT-GGGGGTC-ATTACAAA---------AGTCTCTTAA-----AATTCGT
i cb4.chrX              C 0 I 310
s caeRem4.Crem_Contig0   1646750 28 -  4500979 -----------------------TTGATCAACAG----------ACTATGAT---------AGT-------------GGTCga
i caeRem4.Crem_Contig0  C 0 I 26
s caePb3.Scfld02_0       2985812 45 +  4147112 -------------------------CTTGGAAAA----------ACTATCAacacaaaatcattttctgaatc---agATCGA
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold17934   125028  9 +   591668 -------------------------------------------------------------------------ACAAGATTT-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    371043 53 +   386604 I

a score=0.000000
s ce10.chrX              4736297 37 + 17718866 AGAAAACTTGTATTCCATAGTTTAAAAATGATTTGGG
e caePb3.Scfld02_0       2985857 22 +  4147112 I
e caeJap4.Scaffold17934   125037  0 +   591668 C
e cb4.chrX              10074161 310 + 21540570 I
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=494.000000
s ce10.chrX              4736334 19 + 17718866 TTTCAAAAGCGTTAACTTC
s caePb3.Scfld02_0       2985879 18 +  4147112 -CTCAAAAACGAGAACCGT
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17934   125037 14 +   591668 -----TAACCATTAACTTC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10074161 310 + 21540570 I
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=-779.000000
s ce10.chrX              4736353 146 + 17718866 TT---ACCCTAGTTTCAC-----TCACCATGGTCCACGGCCAGGTTATTAAAGTTTGACCCAATTCTATGTTCTAACCAAGTTTGAAAGATACAAGAAAAGTCCACATCAGAGTTAGGACAAAAACGATCAAACATGAGCTGACATGGGC-TTGA
s caePb3.Scfld02_0       2985897 113 +  4147112 TCAAAATACGAGATTCATGTGTATCTTCGTGTTCCACAACTCGGTTATACAACTATCAC-------------------------------tgtagaaaaaatcgata----------agcCAGAAGAATCTAGCAAGAA-GAATATGGACGTTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   125051   0 +   591668 C
e cb4.chrX              10074161 310 + 21540570 I
e caeSp111.Scaffold622    371043  53 +   386604 I
e caeRem4.Crem_Contig0   1646778  26 -  4500979 I

a score=1146.000000
s ce10.chrX              4736499 4 + 17718866 ACCT
s caePb3.Scfld02_0       2986010 4 +  4147112 ACCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   125051 4 +   591668 Acct
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10074161 310 + 21540570 I
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=-1160.000000
s ce10.chrX              4736503 72 + 17718866 AGTTTTGGGCAACTTTTGACCAAGTTCTACCAAATTCTGGATCAACCTATCATTTTTTGGGCATGAAGTTGT
s caeJap4.Scaffold17934   125055 29 +   591668 atttat---------------aaattttccaaTGTTC----------------------------AGGTAGT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2986014  0 +  4147112 C
e cb4.chrX              10074161 310 + 21540570 I
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=-521.000000
s ce10.chrX              4736575 25 + 17718866 CGCTAAATTCCGAGTAGGCGTTTTT
s cb4.chrX              10074471 25 + 21540570 CCTtttatttcggaaaaatataTTG
i cb4.chrX              I 310 I 18
s caeJap4.Scaffold17934   125084 19 +   591668 CCCCACGTTCCAAGTCGGC------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2986014  0 +  4147112 C
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=0.000000
s ce10.chrX              4736600 18 + 17718866 TTTCAGATTGTCGAGACG
e caePb3.Scfld02_0       2986014  0 +  4147112 C
e caeJap4.Scaffold17934   125103  0 +   591668 C
e cb4.chrX              10074496 18 + 21540570 I
e caeSp111.Scaffold622    371043 53 +   386604 I
e caeRem4.Crem_Contig0   1646778 26 -  4500979 I

a score=20767.000000
s ce10.chrX              4736618 106 + 17718866 TTCCAAATTGATCAACTCAAAGACACTGACAGACTGCCATACGAAATTCACGTTTTTGTGAGAGTTCCTCCACTTGGATACACTACCGTCTTTGTCGAGAAAGGAA
s cb4.chrX              10074514 106 + 21540570 TTCAAAGTGGCTCAACTGAATTCTACAGACCAGTTGCCATACGAAATCCATGCCTTTGTTTCAATTCCACCATTAGGATACTCTACAGTTTTTGTCTCTAAGGGAG
i cb4.chrX              I 18 I 3
s caeRem4.Crem_Contig0   1646804 106 -  4500979 ttcaaagttgaccaattgAAAAACGCCGACAGGTCTTTATATGAGATACACGTTTTGGTTAGAGTGCCACCGCTAGGATACACTACAATTACAGTGTCGAAAGGAA
i caeRem4.Crem_Contig0  I 26 I 23
s caeSp111.Scaffold622    371096 106 +   386604 TTCCAAGTAAATCAACTGAATGATAGTGATcgttcaaattttgaaattcatgtTTTCGTTCGTGTTCCGCCACTTGGATACACAACTATAACTGTTGAAAAAGGAT
i caeSp111.Scaffold622  I 53 C 0
s caePb3.Scfld02_0       2986014  30 +  4147112 TTCCAAA---------------------------------TTGGAAACGAGGTT------------------------------accaaaact-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   125103  94 +   591668 ------------CAGCTTAAAAACAGTAACCGTTCTCAAtttgaaataaatgtttttgtcaGTGTTCCACCACTCGGTTACACTACGATTTCTAtagaaaaaggaa
i caeJap4.Scaffold17934 C 0 C 0

a score=-4311.000000
s ce10.chrX              4736724 23 + 17718866 GCAAACCTGAACGCGTGCATTTT
s cb4.chrX              10074623  8 + 21540570 ------GAAAAG---------TT
i cb4.chrX              I 3 I 3
s caeSp111.Scaffold622    371202 17 +   386604 ------CTAAAAGTGTTTACGTT
i caeSp111.Scaffold622  C 0 I 6
s caePb3.Scfld02_0       2986044  2 +  4147112 ---------------------tt
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   125197 17 +   591668 ------ataaagtgaaacccatt
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1646910 23 -  4500979 I

a score=230156.000000
s ce10.chrX              4736747 627 + 17718866  
s cb4.chrX              10074634 486 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1646933 627 -  4500979  
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold622    371225 613 +   386604  
i caeSp111.Scaffold622  I 6 C 0
s caePb3.Scfld02_0       2986048 566 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   125214 722 +   591668  
i caeJap4.Scaffold17934 C 0 I 195

a score=209985.000000
s ce10.chrX              4737374 416 + 17718866 TACCTTAACATCT--ATAAATTTTCCTTCAA---ACAATACTTC-----TTACAGTTTCGACGGTGCTACTTCTTTTGAGTACTCTGATACTGAACCAATAGCCGGAAACTACTACCCAATAACTAGTTTTGGATATATCAAGGATGAAAACGCTCAGTTTAGCGTTATCACTGATAGAGCCCAAGGCATGGTAGCCTCTGACGGAGTTGTGGAAATTATGGTAGTAC----AGGAGTGAGGTGCGATTTATAATACATTCATTTATTTGTAGCTTCATCGTCGTTGCTTTTATGATGATCACTTTGGAGTTGAGGAGGCATTGGATGAGCCTGGAAAAGATGGTGCAGGGCTGGTTGCCATGGGAAAACATATCGTTCTGTTTACTGATGTCAAGGTAATTAAGGTGTTAAGTGAGGATAGCTCCGTAT
s cb4.chrX              10075120 341 + 21540570 --------cgaaa--aaaaatttctgtaataA--TCATTGCTTT-TCTCTTTTAGTTTCGATGGAGCCACTTCTTTTGATTATGATGACACTGAACCAGTTGCCGGAAACTACTATCCAATCACTAGTTTTGGATATATCAAGGATGATAAAAATCAGTTCAGTGTGATCACCGATAGAGCTCAAGGGATGATGGCTAACGAGGGAGTTGTAGAGATCAT----------------------------------------------------GCTGCATCGCCGTTGCTTCTATGATGATCATTTTGGAGTTGAGGAAGCTTTGGATGAACCTGGAAAAGATGGTCGTGGTCTGGTAGCAAAAGGAAAGCATATTGTTCTGTTCACGGATCTGGAGGTTTT------------------------cgtat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1647560 374 -  4500979 --------TTGAT--GCTgattttt---------ttataactttatgtttttcagcttCGGTGGAGCTACTTCCTTCGATTATTTGGATACTGAACCAATTGCCGGAAATTACTATCCACTAACTAGTTTTGGATACATCAAAGATGGTAATGATCAGTTTAGTTTGATCACTGACAGAGCTCAAGGAATGATGGCAACAGATGGTGTTGTTGAAATTATGGTAACCGTTTTTATCGCCA---TCTAATTATTGAGTA-ACA----AATTAAGCTTCATCGCCGTTGTTTTTATGATGATCACTTTGGAGTCGAGGAAGCACTAGACGAACCAGGAAAAGATGGTAATGGTCTTGTTGCAATCGGAAAGCATATTATTTTATTCACGGATGTCAAAGTAAT-----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    371838 371 +   386604 --------TTCCTAAGTCTAACAGTCTC------Tcatcagaaa-----tttcagtttcgacGGAGCCACTTCCTTCGAGTATCATGACACTGAACCAGTCGCAGGAAACTATTATCCAATCACTAGTTTCGGATACataaaagatgaaaatgatcagtTGAGTATCATAACAGATAGAGCACAAGGAATGGTTTCGTCAAATGGAGTTGTAGAAATTATGGT---------AGTTGGAGGACACTGTTTTCCAAACA-ACATTAGGTTCTAGGTTCATCGACGATGTTTCTATGATGATCACTTTGGAGTTGAAGAAGCATTGGATGAACCTGGAAAAGATGGAACTGGTCTTGTAGCAATGGGTAAACATATTATCTTATTCACTGATCTGAAGGTAT------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2986614 374 +  4147112 --------TTGCT--GCAAAACTGTCTCAGAATGTTATTACCAA------TCCAGCTATGACGGAGCGACATCATTTGAGTATTCTGACACTGAACCAGTTGCTGGAAACTACTATCCGATTACTAGTTTTGGATATATCAAAGATGGTAGAGATCAGTTTAGTATTATTACTGATCGGTCCCAAGGAATGGCTGCATCAAATGGAGTAGTTGAAATTAtggtaaaaaaacaaatggaaaggttatattttctgaa----------gtttcagattCACCGTCGTTGCTTCTATGATGACCACTTCGGAGTTGAAGAAGCTCTTGATGAACCTGGAAGAGATGGAACTGGACTTGTTGCCATGGGAAAACATATCGCTTTGTTCACTGATTTGGCGGTAC------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   126131 379 +   591668 tacCG---TAACT--ctataatttattttaaac-ataccaattt------tccagtttcgaCGGGGCCACTTCTTTCGATTACTCTGACACTGAACCAGTGGCTGGAAATTATTACCCAATCACCAGTTTCGGATACATTAAAGATAACGTCGAACAGTTTAGCGTGATAACGGATAGAGCTCAAGGAATGATGGCTACAAATGGTGTGGTAGAGATAATGGTATTACG---CACACAAAAATGTGGCTTTTTGAGAAGATA----CTTTCAGCTTCATCGTCGTTGTTTCTATGACGATCATTTTGGAGTGGAAGAACCATTGGATGAGCCTGGAACTGATGGGGCTGGTCTTGTCGCGATGGGCAAACATATTTTGTTATTTACGGATGTTAAGGT--------------------------------
i caeJap4.Scaffold17934 I 195 C 0

a score=-23222.000000
s ce10.chrX              4737790 117 + 17718866 ATAGTGGTGGCCGCTAGAAAGTTAGAGCTGatcagccacagtcgccggctcggatgtggcattaactgtacctgctttccagctccgcaatg-------catatagcctgaggaacgggtcgtc
s caeRem4.Crem_Contig0   1647934  18 -  4500979 -----------------------------------------------------------------CTGACTCTATT---------TGGAACG--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    372209  33 +   386604 ------------------------------------------------------------ATTAACAAATTCAATT------CTCTGGAATTATGCACG-------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2986988  35 +  4147112 ACTGTGGTG---------------------------------------------------ATTTGTAGATTTCTCA------ccatctaatt--------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   126510   8 +   591668 -----------------------------------------------------------------TTggttat---------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10075461   0 + 21540570 C

a score=99872.000000
s ce10.chrX              4737907 272 + 17718866 ttttaatactttGATCCTTCAATCG--CCAACTCAAAAAAAAGTTTTTTCAAGGCATCAACTTCACAGCTTCGTCCTCTCGCCATTGACAACTTCCATCAGCCGGTGTTAGCATTTAACAAAAATCC------AGAAAAGTTTGAATTTAATAGACTATTGGAGTATTCTGGGCTAAAATTTGAGTTGCCAATTGGAATACATCTCCTAACCCTCGAG--------AAATGGC----ACAAGAAGAGTAG-C---CTTATCAGATTTGAGAACATTTATCACGGTGAAGAAGGAAA--
s cb4.chrX              10075461 275 + 21540570 ttttgatgatt--------------------cttgataaatctgaaacttcagGAATCAGCCGCTCAACTCCGTCCACTTgtcgctgaaaatttccatcaGCCAGTGTTGGCGTTCTATAACAACTCCAATCTAGAGAAGTTCGAATTCAATAGACAACTAGAGTCACCTGAACGTATTCACGAGTTTCCTCCATGGCTCAATTTTCTTACTATCGAGATGCTAGAAAATCGTGTGGACGGTAAAAACAA-TGTACTGCTTCGGTTTGAACACATTTATCACAATGATAGCGCCAA--
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1647952 244 -  4500979 ----AAAAAC-------------------------ATAAA-CTGATTTCACAGGCTTCTGCTGTTCAACTTCGCCCActtgtttctgaaaacttccacCAACCAGTGTTggcattttctaaaaattc------agagaagTTTGAGTTTAATAGAAAATTAGAGTACTCCGGACTTACACAAGAGTTGCCTTTGTATCTTAATCTTCTCACCTTGGAG--------AAATGGC----acaagaaaaatag-t---ttggTTAGATTCGAGCATATTTATCATAACGATGGACCTGA--
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold622    372242 233 +   386604 ----------------------------------------------TTTTTAGACATCCGCCACCCAACTCCGTCCTCTTGTTGTGGAAAACTTCCATGCACCTGTTCTGGCCTTCTCGGcaaacaaaaactttgaaaagttcgaatacaataaaaaactggaatACTCTGGACTGACACAAGAATTGCCTCTATATCTTCATCTTTTGacattggaa--------aaatgga----acaa-aaaaatag-t---ttggTTCGGTTCGAGCACATCTATCACAATGATGGACCAGA--
i caeSp111.Scaffold622  C 0 I 11
s caePb3.Scfld02_0       2987023 234 +  4147112 ----------------------------------------------ttttcagacatcgGCGAAACAACTCCGCCCACTTGTACTTGAAACCTTCCATGCACCAGTTTTGGCATTCTCAGCAAATCAGAACTTGGATAAATTCCGGTTCAACAGAAAACCAGAATATTCCGGCTTGAAGGAAGAACTGCCACCATATCTTCACTTGCTAACTTTAGAG--------AAATGGC----ACAA-AAAATTGGCT---TTGATCAGATTCGAGCACATTTATCACGATGATGGACCACA--
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold17934   126518 269 +   591668 ttttaatattaaagcCCTCTAATCGTTTTTACT-------------TTTACAGACCTCTGCAGCTGAATTAAGACCACTTGCTATCGACAATTTCCATCAACCAATTCTCGCGTTTTCGACAgataaaaaacaagaaaaatttgaGTTTAATCGACAGTTAGAATATTCTGGATTGACACGAGAGCTTCCACAATATTTGCATCTTTTGTCTTTGGAA--------AGATGGC----ACAAGAAGAACAG-T---TTGATCAGATTTGAACATGTTTATCACAATGATGGAAAAGAAT
i caeJap4.Scaffold17934 C 0 C 0

a score=-3409.000000
s ce10.chrX              4738179 13 + 17718866 TAGCA-----TTAAAGAA
s cb4.chrX              10075747 17 + 21540570 ACGCGGTGCCTCAAATA-
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1648207 17 -  4500979 TTGCAGTTGCTGAAAGT-
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold622    372486 17 +   386604 TTGCAGTCACTGAGAGT-
i caeSp111.Scaffold622  I 11 C 0
s caeJap4.Scaffold17934   126787  8 +   591668 CGGCAGAT----------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2987257 28 +  4147112 I

a score=2698.000000
s ce10.chrX              4738192 13 + 17718866 --TTTGATCCAACAG
s cb4.chrX              10075764 13 + 21540570 --CTAGACTTGGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1648224 13 -  4500979 --TTCAATCCGAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    372503 13 +   386604 --ATTAATCCAAAGG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987285 13 +  4147112 --TTCGATGAAAAGG
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold17934   126795 15 +   591668 TTTGCCATTCAACAG
i caeJap4.Scaffold17934 C 0 I 1018

a score=-8824.000000
s ce10.chrX              4738205 41 + 17718866 TAA--GGACAACATACATTTA--TTTTCTATAATACTTGTGA----TAT
s cb4.chrX              10075777 37 + 21540570 TAAGTTAGCa--------ttcaattctcaaaaaaatttaaat----att
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1648237 33 -  4500979 taa--taaca--------att--tttggaaaaaaacattaat----gtT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    372516 36 +   386604 TAT--TAATT--------TAG--ATTGCGTTacgttttgaat-attttt
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987298 39 +  4147112 TAA--TTATT------AGTTC--ATTGGTATACTAttttaatgaagttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   126810 1018 +   591668 I

a score=16886.000000
s ce10.chrX              4738246 31 + 17718866 TTGCAGCACATTTTCACAAACTTCGATATTG
s cb4.chrX              10075814 30 + 21540570 tt-cagaatttattcaaaagcttcaaacttg
i cb4.chrX              C 0 I 311
s caeRem4.Crem_Contig0   1648270 31 -  4500979 TTATAGAACTTGTTCACGAACTTGGACATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    372552 31 +   386604 tctcagaacttGTTCACCAATTTCAACAttc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987337 31 +  4147112 ttccaggAAATATTCACCAACTTCGACAtcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   127828 31 +   591668 ttgcagaacCTTTTCACTGATTTTGATATTC
i caeJap4.Scaffold17934 I 1018 C 0

a score=-4774.000000
s ce10.chrX              4738277 170 + 17718866 TGTCATTCAAAGAGCTTCTACTTGGTGCTAACAGAGTAGTGGGAAAAAATAAAGGTACACCAGATATTTTTACT-----------------------------GTTTCTCGAT--TCTTTATGTTTTTCAG--------------------------------AATCGGGATCGTCATTCCGCAGTTTCGAGAAATCCAAGATTTTAACGTTTGAAATTGAAGTGGAACGCAA
s caeRem4.Crem_Contig0   1648301 174 -  4500979 TCTCCTTCAAACCATTGCTGCTGGGAGCTAAT------------AAACAAAAAGGAAGTTCAAGTGAGTTATCT---GATCTTAAACGGTACACCACActaaagtttcagaat--ctATTGTATC------------------------------------TAAAACCGGATCGTTCACAATTCGTTC------ATCTGAGATTCTTACTTTTGAGATTGAAGTCGAACGAAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    372583 173 +   386604 tctcattcaaaccATTGTTGTTGGGAGCCAAT------------AAAATCAAAGGCAGTGCAAGTAAgt----------------------------------gtttcct--------ttttatttttcagtatgTTTAAACTTGCAGGAGCTCCGACTCTCCAAACGGGAGCATTCACTATTCGCCC------TTCCGAAATTTtgacttttgaaattgaagtcGAACGTAA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987368  93 +  4147112 acgtttcgaaacttttgctTTTGGGAGGTGAT------------AGAGACAGAGAACCACCAAA---------------------------------------GTTCCGT--------TGGTATC----------------------------------------------GCATTAA---------------------GAATGGTTAGTTTTCTAGTT--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   127859 184 +   591668 TTTCGTTTAAACAACTTCTTCTCGGAGCAAAC------------AAAGTGAAAGGAAGTACAAGTGAGAATTCTTTTGATCTTC-------------------ATttattaataataataatattttttgt------------ttcagaatcGATAATAGcaaaatcaggaaaatttaCAATTCGtcc------atctgaaattttaacgTTCGAGATTGAAGTTAGTCGTCG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10075844 311 + 21540570 I

a score=-48.000000
s ce10.chrX              4738447 15 + 17718866 AATGTCAAAATTATA
s caeSp111.Scaffold622    372756  9 +   386604 ------ATAATTGGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987461  6 +  4147112 ---------ATGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   128043 15 +   591668 AAAACCGTAATTgca
i caeJap4.Scaffold17934 C 0 I 193
e cb4.chrX              10075844 311 + 21540570 I
e caeRem4.Crem_Contig0   1648475  7 -  4500979 I

a score=-21693.000000
s ce10.chrX              4738462 465 + 17718866 AATTAATTTCATGTGAATAGCGCAGTTTTCTGAACCAAGAGTTTGCTTTATTTCAAATGTAAAAACAAATATTAAAATCGATAAATTTATTTATTTTAAACTCTTACAATGTTGG-AATATAAGCAATTTAAATTTAAATAGAACATAACACTGGAAGAAAAAAAATTTTTTAATCGACGTCTTCCAAAAAAAGTTAAGCTGAATTCCCATAACTTTTTGACATAAAataaaaaattttccaacaaatttttgaaaggttttattatgaaatttgtccattttagcCATGATTTTTAATCATTTTTTCAGAGAATGTAGTCCACTTTTAACTTTTTGAAAATTACTGTAATTTCAAACTTGGAAAAGTAAAAACGTTTACTATAATAATTGAAGTAAATTACATCCTAAAA-AACGACAAGTTTTTATTTGTCTTTCTGAAAAAAAAAGTTTCAGCACATTCaa-taa
s caeSp111.Scaffold622    372765 233 +   386604 ATCT------------------------------CTGATACTTGACGCTTTATCAACAGAAACTTCATATA--------------------TATATTGAATCCTATAATTACTAATATTACAAG---------------------------------AACAATacatttcataat------------------tttaagatttatt--------tattaaatGCAAA-----------------------------------------------------TTTCGGACATATTCAGGGTTA------CAAGAACAGtattaaacttttttgttgtgaTA-----------ATTAAAGTTCTGAGA---------------------------------------ATTGAACAAGAAACGAATCAT-----GCCCT------AAATAGA--GCCATAAAAGGCAA----
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987467 230 +  4147112 ACTT------------------------------CTAATAGTTCCTTTTTTGCAGGTAGAGTCACCATTCA-----------------------ATCACTTCCTTTCACTATTGA-ACCATCGG---------------------------------AGATAAGAACTTATGAAT------------------GTGAA-----------------CTTGAACGCAAG------------------------------------------------------TAAGCAGTCATTGTGGGCT------------ACAGTGCTTTAATTTTCTGCATATatatcttcc---attttcaagttttgaaa-----------------------------caaatctcCTGATGAAC-ATTGACAAAttct-----------------aataaatttttatcaaatgcAAATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   128058 193 +   591668 I
e cb4.chrX              10075844 311 + 21540570 I
e caeRem4.Crem_Contig0   1648475   7 -  4500979 I

a score=-13988.000000
s ce10.chrX              4738927 139 + 17718866 taaatatatttactattttttattaGA-------------GAAAAGTATGAGGTATGTGTCAAACGGA----CAAAAACAATAAATTAT-TATTTTCTGATTTACAATGAATTCAAAATTGCTATAACA------AGCAAGCCATAT-----AAAACTTTTTGAAAGT
s caeRem4.Crem_Contig0   1648482 139 -  4500979 TAAATATTTTACTCACtattaattttattaaatGCATTGATGGGAATACAAA-----TTTGGTGTTGGATAATAAGAACAatgaattat-tatttta------ataaTGAGGTACAAA-----------------AGCGAATCGATTGTCttataaaactttgaaaga
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    372998  37 +   386604 ---------------------------------------------------------TTTAACATTGG-------------------------------------------------------------------AGAAAGATGGTT-------AAAacccagaaaaa
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2987697 101 +  4147112 ----------------------------------------TGAAGTTATAAT----TTTTAAGACGGG-----CAAAACAATAAATTAcagattttc------acaaaaaataacaag--------acATGCCCTAGAAAGCCATATa----agaaaattcggaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   128058 193 +   591668 I
e cb4.chrX              10075844 311 + 21540570 I

a score=910.000000
s ce10.chrX              4739066 1 + 17718866 A
s caeRem4.Crem_Contig0   1648621 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold622    373035 1 +   386604 a
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0       2987798 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold17934   128251 1 +   591668 a
i caeJap4.Scaffold17934 I 193 C 0
e cb4.chrX              10075844 311 + 21540570 I

a score=124101.000000
s ce10.chrX              4739067 385 + 17718866 TGAATGCGAATCGGACCCGAGGTGGATTCACAAAAATTAACAAGAACAAAACCTGATGTAAACTC----CGAG---AAATTGA-------AGAGGAAGGAAACAG----------TATACCCATAAAGAAACGTGGCATCAAATTGTAAATTTGGTCAATG-----GAAAGATAGATGGCAACTTGCC----------ATGACAGGAGGGGCAAAA------------A--ATCAGACCGGGAGAAT---------ATGACTATCACTAACAAAGTTCAAGATTTAA----AAACTAGT------AAAAAAC---AGAATCAAAAAGATTCAAAAAAGTTTAATAACTGCAACAATTATTACACAAATCAGGATACTAGATGTTGTTGATCCATCCGGCT------GAATTTCTTTTTCCGTAACAATCACTGATGGTCCTTTGGGGTTGGTTGATAGATCTGTAA
s cb4.chrX              10076155 363 + 21540570 TGACAGTGAATCCAACCCGAGGTAGATTCACGAATC--------AATAAAACCTGATGAACAGct-----gaa-----------------gagagaagaaaaaagaggaagatg-gATACCCATA---AATTGTGGCGTAACGT----TTTTTGGTCTGAG------------TGG-GAGGATGAGCA------AAAAATGACGGAGAAAACAAGAGAATTGGGCACAAAGAGAAGACCGGGATGGT--------ACAGACTATCACTAACG------GAAAATTGA----TGACTAga------ggaaaa----------------aattagaaaaatcgaatgatTGCAATGATGATAAGTGACGTGAGAGCAGATACAGTTGAAGATCCATCAGGTT------GACTTCCTTGTTCGGTGACAATGACCGAAGGCCCTTTTGGATTCGTGGAGAGGTCTGTAA
i cb4.chrX              I 311 I 123
s caeRem4.Crem_Contig0   1648652 377 -  4500979 TGACTGCGAATCTGACCCGAGGTTGATTCACAAACC-----------AAAACCTGATAAAAAACTT---CGAG-----------------AAGTGGAGAAAACAGAACAAATTGTAATACCCATA---AAACGTGGCATCAAG------TATTGGTCGGAGGTTTGAAAACTTTGGTGACGATGAGCAC-----AAAAATgacaggaaaagaaaaa-----gggcaCGA--ACACGACCGGGATGAT---------TTGACTATCACTAACG------GAGAACGGA-----GActaaaaaacagggaaaat---gA--------TGACTCAGAAGAGCCTGATTATTGCAATGAAGATAAGAGAAGTGAAGATAGTGAGAATCGATGAGCCATCTGGTT------GCACTCCTTGCTCTGTGACAATAACTGATGGTCCTTTTGGGTTTGttgaaagatctgaaa
i caeRem4.Crem_Contig0  I 30 I 4
s caeSp111.Scaffold622    373040 377 +   386604 -gaatgtGAATCAGACCCGAGGTTGATTCACAATCC-----------AAAACCTGATGAACAATC----CGAG---ACAttgagat---agaaaaaaggtgaaGCATGGAATT--AATACCCATA---GAATGTGGCATCGAACAAATTATTTGGTTTTGA---GTGGAACTGTAACGGCAATGAGCAC-----AAAAATGACAAAGGGGGACAAT-----GGGCACAA--GTTGGACCGGGATGGG---------TTGATTATCACTAACA------GAAAATTGA-------CTAGA------GTATTAT---TG----------ACTCATAGAAATCTGACGATTGCAACAAGAACCAGAGATGTGTAAATGCTGATAATGGAAGATCCATCCGGTT------GAGTTCCTTGTTCCGTGACAATGACAGAAGGTCCTTTCGGATTGGTTGACAGGTCTGgaa
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0       2987821 386 +  4147112 TGAATGGGAATCGGACCCGAGGTTGATTCACAAACA-----------TAAACCTGATGAAAACTC----ggagggaaaattgaaac---aagacgatgaaaaaagaaaaaaat--agtaccCATA---AAATGTGGCatcaaat-aattatttggTCAAGA-AGAGAGAACTGTAACGGCAATGAGcac---agaaaaatgacaaaatagaACAAT-----GGGCACAA--GATTGACCGGGATGAC---------ATGACTATCACTAACA------GAAGTTGAA-----TTCTAGA------AGATCGT---AA----------GTTTAGAAGAATCGGATGATTgcaatgaaaatgagagaagtaAAAATGCTGATTGTTGAAGATCCATCTGGTT------GGGTTCCTTGTTCAGTAACAATGACAGATGGTCCTTTCGGGTTTGTCGaaagatctaaaa
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17934   128252 408 +   591668 taaatgtgaATCTGACCCGAGGTGGATTCGCAAGCA-------AAACAGAACCTGATACAATCTTTGGAAGAG---AAGTTAAAGTTtgagaaacaagaaaaaagcaaa------tttaCCCATA---AGAAATGGCATAAAAC------ATTGATGTGAA-----GAATAACTGA-GACAATGAGCAGAGAAGACAAATGACTGGA------AAATGGTTGGGCACAA--CGACGACCGGGGTTGAGGGAAATGAGTAACTATCACTAACATGG---GAAAGGTTATGtattattaaa------taaaaatttgag----------ttTTAAATACACCAGAAAGCCAAAACCAAGGCTAAAATGGTAATAGGACAAATCGTTGAAGATCCATCTGGCTCCGgtgaattttcttgttcattcgCAATGACTGAAGGTCCTTTCGGATTGATTGATAggtctgaaa
i caeJap4.Scaffold17934 C 0 I 465

a score=-6674.000000
s ce10.chrX              4739452 53 + 17718866 -----------------TGCGGTCTAATTATCAATCGTTTAGTTCAAAACTTTATACTACTACTCGTAAA
s caeRem4.Crem_Contig0   1649033 50 -  4500979 -----------------tggttGTAAATTTT-AATAGTT--CTTCCCATTTcgttcccatttttctctca
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold622    373417 47 +   386604 gaga------------acattttgagATTGA-AATAACT---TTCCCAGGCACTattcattcc-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2988207 69 +  4147112 aaaatagatgtcAATTCCATTCTTCAGTTGT-TCTCCCTATATTCCCAGCCATTTCTCATTCCTCCctca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   128660 465 +   591668 I
e cb4.chrX              10076518 123 + 21540570 I

a score=19084.000000
s ce10.chrX              4739505 113 + 17718866 C--------TTCTCAACCCCATACTTTACATTCTTCACTCGTAAAC-TTTT----GAACAAAAAGTGTGCTGCGCGGTAATTTTGAGGGATTAAGTGTAAGGGAGAGC----GGAGGGAAAAGTA--GATGA
s caeRem4.Crem_Contig0   1649083 124 -  4500979 tcccATTGTATTCTA--TTCATCTTCTACTATTTCGGCTCGTAAAAGTTGT----GGTCAAAAAGTGCGCTACGAGGTAATTTTCCGGGATTAAGTGTAAGCGAGAGCGCCGAAAcgaaagaatg--agaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    373464  97 +   386604 ---------atttca--tcGTTCTTTCCCTA-TTCAGCTCGTAAAA-CTATG---GGACAAAAAGGGCGCAGCGAGGTAATTTCGAAGGATTA-------------------AGAAGAAAGAGGGCCAAAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2988276 121 +  4147112 t-------tctttcatttccttcttttactA-TTGGGCTCGTAAAAGTTGTG-GTGGACAAAAAGTGCGCTGCGAGGTAATTTACAGGGATTAAGTGTAAGCGAGCGGTCGCAGAAGGAAGAGGG--AATGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   129125 118 +   591668 --------CCTCCTAACCCTCTAGCCCCTCTCTTCGACTCGTAAAAGTAGTGCGCACGCAAAAAGTGCGGCGCAAGGTAATTCGCAGGGATTAAGTGTAAGCGAGCGAGTTGAGTAAGGGAACTG--A----
i caeJap4.Scaffold17934 I 465 I 41
e cb4.chrX              10076518 123 + 21540570 I

a score=730.000000
s ce10.chrX              4739618 22 + 17718866 GT----CCTAGTGGCTTTTGTTAAAA
s caeRem4.Crem_Contig0   1649207 22 -  4500979 atgggTCCGACTGGCTTTTGTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    373561 20 +   386604 AT------GACTAGCTTTTGTGGAAA
i caeSp111.Scaffold622  C 0 I 28
s caePb3.Scfld02_0       2988397 20 +  4147112 AA------TACTGGGTTCTGCCAAAA
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold17934   129243 41 +   591668 I
e cb4.chrX              10076518 123 + 21540570 I

a score=0.000000
s ce10.chrX              4739640 5 + 17718866 ACGTA
e caePb3.Scfld02_0       2988417 33 +  4147112 I
e caeJap4.Scaffold17934   129243 41 +   591668 I
e cb4.chrX              10076518 123 + 21540570 I
e caeSp111.Scaffold622    373581 28 +   386604 I
e caeRem4.Crem_Contig0   1649229 0 -  4500979 C

a score=1670.000000
s ce10.chrX              4739645 36 + 17718866 AGAAAACTCATTGTCCGCCGGACTCATGAGACCCAA
s caeRem4.Crem_Contig0   1649229 36 -  4500979 GGAAAAGTCATTGTCCTCTAGGTCTATGACACCAAA
i caeRem4.Crem_Contig0  C 0 I 78
e caePb3.Scfld02_0       2988417 33 +  4147112 I
e caeJap4.Scaffold17934   129243 41 +   591668 I
e cb4.chrX              10076518 123 + 21540570 I
e caeSp111.Scaffold622    373581 28 +   386604 I

a score=0.000000
s ce10.chrX              4739681 692 + 17718866  
e caePb3.Scfld02_0       2988417  33 +  4147112 I
e caeJap4.Scaffold17934   129243  41 +   591668 I
e cb4.chrX              10076518 123 + 21540570 I
e caeSp111.Scaffold622    373581  28 +   386604 I
e caeRem4.Crem_Contig0   1649265  78 -  4500979 I

a score=202539.000000
s ce10.chrX              4740373 287 + 17718866 AACTTACCAATATTTTTGGGATGATCTTCTTGTATGATTGCCTTAACCGGATTC---CTATCAATAACT---GGTGGCATTCCTGAACCAGACCCATCAAAGTCTTCCGAGTCCTCATCATCCCACAATGGATTCGACGCTGAACCTTCTACGTTCGC------CTTTTTCTCATTTTTCTTCTCGATCCAGTCCATCTGCAATTTACC------AGATAAAAGTCATTAAATCAATCGACCACCCAATGAATTTTCCAAATATATCACCTCTTGCGACCTCATTAAAAAAGTTG-TCGTCTGTTT
s cb4.chrX              10076641 290 + 21540570 aacttaccaatATTCTTTGGATGATCCTCTTGAATAACAGCCTTCACCGGATTC---CTGTCAATGATGATTGGCGGCATTCCTGATCCTGATCCCTCAAAACCATCCGAGTCTTCGTCATCCCACAATGGACT---TGCCGATCCTTCGACAGCgat------tttcttctcattcttcttctcgaTCCAATCCATCTGCAATTAACCAATACAAAA--TAAGTCATTAAATCAACTGGCCACCCAATGAATTCCATGTATATATCAC--ATCGCGACCTcattaaaaaaagtgtttttcacTCT
i cb4.chrX              I 123 I 11
s caeRem4.Crem_Contig0   1649343 283 -  4500979 aacgTACCAATATTTTTAGGATGATCTTGTTGAATTACAGCCTTTACTGGATTT---CTGTCAATAATATTTGGTGGCATTCCAGATCCCGATCCTTCAAATCCATCAAAGTCCTCATCATCCCACAACGGACT---AGCCGACCCTTCTACAgcaat------tttcttctcattctttttctcgatCCAGTCCATCTGCAATTAACC------AAA--AAAGTCATTAAATCAACTGGCCACCCAATGAATTTCACGAATATATCAC--CTTGCGACCTCATTAAACAAGGTG-TTTTCATTCT
i caeRem4.Crem_Contig0  I 78 I 59
s caeSp111.Scaffold622    373609 283 +   386604 AACTCACCAATATTCTTTGGATGGTCTTCTTGAATAATCGCTTTTACTGGGGTC---GTATCAATAATC---GGTGGCATTCCGGATCCCGAACCACTGACATCATCTGAATCTTCGTCATCCCACAATGGATTCGATGCAGATCCTTCGActtgcat------tttcttctcattctttttctcaatccAATCCATCTGCAATTAACA------AAT--AAAGTCATTAAATCACCTGGCCACCCAATCAATTTCACGAATATATCAC--CTGGCGACCTCattaaaatagttt-tattcattct
i caeSp111.Scaffold622  I 28 I 4
s caePb3.Scfld02_0       2988450 283 +  4147112 AACTTACCAATATTTTTAGGATGGTCATCTTGAATGATTGCTTTCACTGGACTT---CCATCAATTATA---GGTGGCATTCCAGACCCGGAGCCATCAAAAGCATCTGAATCTTCATCATCCCAATTTGGATTGTTGGCCGACCCTTCTACTtgcat------tttcttctcattctttttctcgatCCAATCCATCTGCAATTAACA------AAT-AAAAGACATTAAATCAACTGGCCACCCAATGAATTTCACGAATATATCAC--CTTGCGACCTCATTAAAA-AGGTG-TCTTCATTCT
i caePb3.Scfld02_0      I 33 I 4
s caeJap4.Scaffold17934   129284 257 +   591668 AACTTACCAATAGTTTTTGTCGGCTCCTCC---------GTCTTTGTTGGCTCTTTGTTGTCAATCGTA---GTTGGAAGCCCAGATCCTGACCCCTCAAAGTCATCCGAGTCCTCATCGTCCCAAAGTGGGCT---TGCAGACCCTTCAACGACTGCTGTTGGTTTCTTCTCACCTCGTTTTTCAATCCAATCCATCTGCAATCAGC-------AAT--TAATTC-------CAATTGGCCACCC----AATTCAACAAATATATCAC--TTTGCGACCTCATAAAAA-AGTTG-----------
i caeJap4.Scaffold17934 I 41 C 0

a score=-5495.000000
s ce10.chrX              4740660 16 + 17718866 TAT----------------------TTGCTGA-TACTTA
s cb4.chrX              10076942 15 + 21540570 TTC----------------------ACGACGA--ACTGA
i cb4.chrX              I 11 C 0
s caeSp111.Scaffold622    373896 23 +   386604 ttt----------tttcccag----TTAATGA--ACTTG
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0       2988737 37 +  4147112 TCTTTCCCACTTGTTTCCCAGCCCCTTAATGA--ACTCC
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   129541 16 +   591668 TAT----------------------CTGTTGAAAACTC-
i caeJap4.Scaffold17934 C 0 I 29
e caeRem4.Crem_Contig0   1649626 59 -  4500979 I

a score=-4101.000000
s ce10.chrX              4740676 23 + 17718866 GG-----------GCGC---TAATTCTGTCACTCTCA
s cb4.chrX              10076957  9 + 21540570 TG-----------GCGCTGA-----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    373919 17 +   386604 TGTGAGAGGGGATGCGA--------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2988774  6 +  4147112 TG-----------GCGC--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   129557 29 +   591668 I
e caeRem4.Crem_Contig0   1649626 59 -  4500979 I

a score=11208.000000
s ce10.chrX              4740699 17 + 17718866 TGCCAGATC-TTATCTGT
s cb4.chrX              10076966 15 + 21540570 ---CAGATCTTTATCTCT
i cb4.chrX              C 0 I 65
s caeRem4.Crem_Contig0   1649685 17 -  4500979 TGTCAGATC-TTATCTCG
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold622    373936 17 +   386604 TGTCAGATC-TTATCTCT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2988780 14 +  4147112 TGTCAGATC-TTATC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   129586 17 +   591668 tgttagATG-TTATCTAG
i caeJap4.Scaffold17934 I 29 C 0

a score=-6729.000000
s ce10.chrX              4740716 38 + 17718866 ----------TGCCCGGAATTTCA-ACTGCGCT------A-----TACATAGTTTGTGAG--
s caeRem4.Crem_Contig0   1649702 43 -  4500979 ----------Acattgaaaaacga-aatgCGCG------ACCATCTGGATACTTAGCATG--
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold622    373953 44 +   386604 ----------AGATTGGGAAACAG-GATGCGCCAGATGGA-----TAGACGTCATGAAAG--
i caeSp111.Scaffold622  C 0 I 8
s caePb3.Scfld02_0       2988794 35 +  4147112 -------------TTAGAAAACAT-AGTGCGCC------A-----TAGATGTTTAGCATG--
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17934   129603 51 +   591668 AGGCAGGTGTACATCATCAAGCAGTGACGCATC------G-----GAAAACTTTTTCTTgag
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10076981 65 + 21540570 I

a score=-2468.000000
s ce10.chrX              4740754 17 + 17718866 -----AGAAAAAACGAC--------------TTGAC
s caeRem4.Crem_Contig0   1649758 15 -  4500979 -----AGGAATagccaaaaa----------------
i caeRem4.Crem_Contig0  I 13 I 7
s caeSp111.Scaffold622    374005 12 +   386604 -----agaaaaaatgaa-------------------
i caeSp111.Scaffold622  I 8 C 0
s caeJap4.Scaffold17934   129654 36 +   591668 aaaaaggaaagaaagaatattgcatttatttttggc
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2988829 19 +  4147112 I
e cb4.chrX              10076981 65 + 21540570 I

a score=31.000000
s ce10.chrX              4740771 7 + 17718866 AAGAGCT
s caeJap4.Scaffold17934   129690 7 +   591668 aAGCTAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2988829 19 +  4147112 I
e cb4.chrX              10076981 65 + 21540570 I
e caeSp111.Scaffold622    374017 0 +   386604 C
e caeRem4.Crem_Contig0   1649773 7 -  4500979 I

a score=185972.000000
s ce10.chrX              4740778 823 + 17718866  
s cb4.chrX              10077046 798 + 21540570  
i cb4.chrX              I 65 C 0
s caeRem4.Crem_Contig0   1649780 802 -  4500979  
i caeRem4.Crem_Contig0  I 7 I 247
s caeSp111.Scaffold622    374017 820 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2988848 782 +  4147112  
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   129697 767 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=91.000000
s ce10.chrX              4741601 1 + 17718866 A
s caeJap4.Scaffold17934   130464 1 +   591668 A
i caeJap4.Scaffold17934 C 0 I 703
e caePb3.Scfld02_0       2989630 0 +  4147112 C
e cb4.chrX              10077844 0 + 21540570 C
e caeSp111.Scaffold622    374837 0 +   386604 C
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=-3328.000000
s ce10.chrX              4741602 44 + 17718866 CACATTTGTTGCAATTGTAGGGAGGCATATTGGAAGAAAAAATA-----
s cb4.chrX              10077844 32 + 21540570 ---cttttttcgactttttgc---------tGAGAGAGAAGGGA-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    374837 41 +   386604 ---CTAGAATAGAAATGTAGAGGGA-----TAAGAGGAAACGAAATGTA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2989630 35 +  4147112 ---CT------GACTTGTTGCAGGA-----TGgatggaaatggaaataa
i caePb3.Scfld02_0      C 0 I 196
e caeJap4.Scaffold17934   130465 703 +   591668 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=-314.000000
s ce10.chrX              4741646 4 + 17718866 TACT
s cb4.chrX              10077876 2 + 21540570 TA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    374878 4 +   386604 TATT
i caeSp111.Scaffold622  C 0 I 121
e caePb3.Scfld02_0       2989665 196 +  4147112 I
e caeJap4.Scaffold17934   130465 703 +   591668 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=-1112.000000
s ce10.chrX              4741650 168 + 17718866 AAAAGTCAAAACACAAAATATATCAGAAACTGAAACGGAAGTGTGC-AAATGTGCCTGATATTT-GAACGTGTAAGGTAGCCCTTTCACTTTTATTGATCCACTTTTGACTTTATAAACAAACTAGGAAATTCCTCATAGAGTCAAACTAAAAATAGTACAACATAGATA
s cb4.chrX              10077878  87 + 21540570 ------------------------AGAAATGCAAATGGATGTGTTTGGAACAAACCGTTTGTTTGGAACA--------AACCCATGCACTT---------------------------CAAACCAGTAAATCC------------------------TACTGTATGAATA
i cb4.chrX              C 0 I 167
e caePb3.Scfld02_0       2989665 196 +  4147112 I
e caeJap4.Scaffold17934   130465 703 +   591668 I
e caeSp111.Scaffold622    374882 121 +   386604 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=0.000000
s ce10.chrX              4741818 185 + 17718866 CAATGCCGATCTAATTTGATGACCAGGAAATGTTTTCAAACGAAGGGCAAGAAAATGTTTTTTGTTATGAAATTAAGCTTAACAGATAAAAATATTATGTGCACATCGAATACCATTTTTAGGGGTAGTGGTCAATATACGATAGTAACTAAATGTGGAGAATATCATGGTGGTCATTTTGGAAA
e caePb3.Scfld02_0       2989665 196 +  4147112 I
e caeJap4.Scaffold17934   130465 703 +   591668 I
e cb4.chrX              10077965 167 + 21540570 I
e caeSp111.Scaffold622    374882 121 +   386604 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=-188.000000
s ce10.chrX              4742003 247 + 17718866 TTGAACCCGCTAAGCTGTATTTCATGCGTTCTGAAATCTAGGCGGTCATTATAAAATTATAAAA-------------------AGCATTTTGTTAATTGACAACCTTTCTGT--------------AGAATATATTCATGAATAGATTTTATA---------------------------GATAAGTGCCCTTTAAACGCATCTCAGGTCAAAAAAGTCTTGT-CATCT-------AAATTAGTCGAAATATATA------TTATCACTCAGAAAACA-------TCTGATTTGTCATACATAGTTACTCTCTAGTCACAATGAATGT
s cb4.chrX              10078132 305 + 21540570 ttgagctcaattatctcgattcc------tgtggaa--------gatatcataaagtggcaaaatattttcgaaattctcatcagtattttgttaattgataacttttttatatctcttacaggaaaagagatatataagcttaaagttgacagttcgGCTAATTTATTAGATGAAATACGGTAGGTACTTTTCGATAGGTTGATTGACTAGAAAAGTATGGTACATCtggttttaaaaatcttcaaaaagtgTAAATCGCTTTTTATCGAaactataacttttttttggtttctca---------aTTCTCAAGTATTATTGGATTA
i cb4.chrX              I 167 C 0
e caePb3.Scfld02_0       2989665 196 +  4147112 I
e caeJap4.Scaffold17934   130465 703 +   591668 I
e caeSp111.Scaffold622    374882 121 +   386604 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=477.000000
s ce10.chrX              4742250 29 + 17718866 -TTTTTATTGTTTTACAAGTGGCAAGTTTG
s cb4.chrX              10078437 29 + 21540570 ctattcctcttttt-tttgccgaaaatcCG
i cb4.chrX              C 0 I 3
s caePb3.Scfld02_0       2989861 28 +  4147112 -TTTTTAATATTTC-CCAGCGTTAAGCCTG
i caePb3.Scfld02_0      I 196 C 0
e caeJap4.Scaffold17934   130465 703 +   591668 I
e caeSp111.Scaffold622    374882 121 +   386604 I
e caeRem4.Crem_Contig0   1650582 247 -  4500979 I

a score=54504.000000
s ce10.chrX              4742279 207 + 17718866 AGTTGGTCATTCAAGG--GCAGATGCACGTTTTTTCTTGTTGGGAATCGCTGCATTAATATCCAATTTCGCAATTTCCGG---TCC----TCTCTCCCCTCCCT--------------TACCCATCCCAATTCCC-----ATGTTTTCTTGCCGATATAAACCATCATCATTC-ATTTGTGACACATTGCCTTTTGT-----------TTTGGACCCTACTACGAATTATCAAGCAT-TGGTGG-------GGGA
s cb4.chrX              10078469 242 + 21540570 AATTAAATATTCAATG--GTAAACGGGCCCTTTTTTGCATGACCAATCCCAGAATTAATATCCGATTTCGCAATTTCCGG---TCATCCTTCCTCCccttttttctcg---cttttctCATCCCACCCGTTTATCCACCCTCCGCTACACGGAGATGTACAAAATCATCATTCAACTTCTGACACATTGTC-TTTGTACATAGAAGCAC--TCGTTTCACTACGAATTATCAAGCTCTTTCTCAAATGGAGG--G
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1650829 192 -  4500979 AGTTAGCTATTCAAGG--GCAGACG----CTTTTTTGCCGAGTGAATCGTAGCATTAATATGCCATTTCGCAATTTCCGG----------TCCTCCTCGTTTTC-------ATGTTCTCATCTCCCTTCTATATC------------CGCAAAGATGTACAAAATCATCATTC-ACTTCTGACACATTGTC-TTTGT----------------GGGTCTCTACGAATTATCAAAGTC-TTCTCA-------T--G
i caeRem4.Crem_Contig0  I 247 C 0
s caeSp111.Scaffold622    375003 206 +   386604 AGTTAGCTATTCAAGGACGCGGATG--CACTTTTTTGCATCGCGAATCGCTGCATTAATATCCAATTTCGCAATTTCCGG---TCa----tcttttcctattttcccA----------TATCCTTGCGTGTTATCC---------TCCAAATATATACATACAATcatcattc-atttctgaCACATTGTC-TTTGT-----------TTGGTAAGACACTACGAATTATCAAACTC-TTCTCA-------TAGA
i caeSp111.Scaffold622  I 121 C 0
s caePb3.Scfld02_0       2989889 215 +  4147112 -GTTAGCTATTCAAGG--GCGGGTG--CACTTTTTTCTGCATTGAATGGCAGAATTAATATACGATTTCGCAATTTCCGGTGAtca----tccttttcttttctcctaaAATTTGGGTTATCCATGTGAGTTATCCAC------TTCCCTCTAAATATACACAATCATCATTC-ACTTCTGAcacattttc-tttgt-----------t--gtaAGACACTACGAATTATCAAACTC-TTCTCA-------T--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   130465 703 +   591668 I

a score=155233.000000
s ce10.chrX              4742486 802 + 17718866  
s cb4.chrX              10078711 788 + 21540570  
i cb4.chrX              C 0 I 256
s caeRem4.Crem_Contig0   1651021 772 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    375209 775 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2990104 791 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   131168 866 +   591668  
i caeJap4.Scaffold17934 I 703 C 0

a score=-1974.000000
s ce10.chrX              4743288 16 + 17718866 AGCCCGATTGAGAGCA-------
s caeRem4.Crem_Contig0   1651793  9 -  4500979 AACCCAATT--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    375984  9 +   386604 AAACAAATT--------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2990895  9 +  4147112 AAACAGGTT--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   132034 16 +   591668 GAGCTGGTT-------ACAAGCA
i caeJap4.Scaffold17934 C 0 I 92
e cb4.chrX              10079499 256 + 21540570 I

a score=-61422.000000
s ce10.chrX              4743304 671 + 17718866  
s caeRem4.Crem_Contig0   1651802 342 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    375993 269 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2990904 303 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   132050  92 +   591668 I
e cb4.chrX              10079499 256 + 21540570 I

a score=-331.000000
s ce10.chrX              4743975 1 + 17718866 A
s caeSp111.Scaffold622    376262 1 +   386604 T
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2991207 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   132142 1 +   591668 A
i caeJap4.Scaffold17934 I 92 C 0
e cb4.chrX              10079499 256 + 21540570 I
e caeRem4.Crem_Contig0   1652144 0 -  4500979 C

a score=216896.000000
s ce10.chrX              4743976 345 + 17718866 -AAAAATT------AAACTCACCATTGGTCTAGGACGAACATCTTTTGTTATCGGAAGTA---GATCATGATCAATTCTGAAATTATTTTTGGC---GGTGAATACGATACCATTCAGAAATATGCAGATGTTTAGAATAATCAGCAGGGAGTGCATGATGTGTGTGTGGGGTCCC-CCTTCTACGTTTCCGACCGACTGAGGCTGAACATACCCGCGACCGCGCCGTCG------------TCGGCGGTCTTC----CTGCC-----------CGTCGCCCCGCCCACTTCTTCCCTCAATTC-TTTCCGACCGGCATGAGCCATTGTCTGCGCTTCTAGATGTTTATGTACTAT---------GGCTACCGA----AGGACATGCAAATTTTTTCTCT
s cb4.chrX              10079755 359 + 21540570 -aaaaaTT------CGACTCACCATTGGCCTTGGTCGTACATCTTTGGTTATCGGCAACA---GTTCGTGTTCAACTCTGTA---ATTTTTGGCACTGGCCATTGCTAATCCATTAAAAAGTAAACATGGCGCTAGAATAATCAGTAGGGAGTGCATG--------GTGAAGGCCC-TTTTCTTCGTTTCCGAGACCGC--GACTGAACATACC--CGACCGCGTCGTCG------------T---TGGTCTTCAACTCTCCCTCTTTCCCCGGCgtcgccccgcccactttttcccTCAATTCTTTTTCGACAGGCATGAGCCATTGTCTGAGTCTAGTATGTTTTATACACTATTTCGGAAACTACGGGTGCTGGATGGacatgcaaattttttttct
i cb4.chrX              I 256 I 24
s caeRem4.Crem_Contig0   1652144 332 -  4500979 -AAAGATT--GAAACTACTTACCATTGTCTTCGGTCGGACATCTTTGGTAATCGGTGCCA---GTTCATGttgaattctgga---atttttggc---GGTTTGAACGAGTCCATTTAAAAGTAAACATGAAGTCAGAATAATCAGTAGGGAGTGCATG--------GTGAGG--CC-CTTTCTTCGTTTCCGACCGACT--GGCTGAACATACC--CGACCGCGCCGTCG------------T---CGGTCTTC----CTCC------------CGTCGCCCCGCC--CCTCTTCCCTCAATTCTTTTTCGACCGGCATGAGCCATTGTCTGCGTTTCATACGTTTCATACACTATCTCGTGAGTGGCGGGTGC----CGGAcatgtaaatttttt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    376263 334 +   386604 -----ATT--AAAACTACTCACCATTGGTCTCGGTCGAACGTCCTTTGTAATCGGCATCATCGGTTCATGAtcgattctgaa---agttttggC---ACTGAATACAGATCCATTTAAAAGTAACAATGAAGTTAGAATAATCAGTAGGGAGTGCATG--------GTGagg--cctttttcttcgcttCCGACCGACT--GGCTGAACATACC--CAACCGCGCCGTCG------------T---CGGTCTTC----CTCTC-----------CGTCGCCCCGCC--CCTCTTCCCTCAATTCTTTTCCGACCGGCATGAGCCATTGTCTGCGTCTACGATGTTTTGTATACTATTTGGTTAGTGACGGGTGC----CGGACatgctaattttttt---
i caeSp111.Scaffold622  C 0 I 4
s caePb3.Scfld02_0       2991208 337 +  4147112 -----attgaaaaactaCTCACCATTGGTCTCGGTCGAACATCTTTGGTTATAGGCATCATTGGTTCATGATCAACTCTGAA---AGTTTTCGC---AGTGAGTACGACTCCatttaaaaataaacatgaaGTTAGAATAATCAGTAGGGAGTGCATG--------GTGAGg--cc-ttttcttcgtttccgaCCGACT--GGCTGAACATACC--CGACCGCGCCGTCG------------T---CGGTCTTC----CCTCC-----------CGTCGCCCCG-C--CCTCTTCCCTCAATTCTTTTCCGACCGGCATGAGCCATTGTCTGCGTCTGCTATTTTTGGTATACTATTTTGTAAGTGGCGGGTGC----CGGacatgtaaattttttttcg
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   132143 342 +   591668 AACAAATT-------GACTCACCATCGGTCTCGGTCGAACGTCCTTCGTAATCGGCGGCA---GTTCGTGCTCAATTCTGAA---AGGCGGTGT---CGTGATTACG---CCgtgtagaaaaataaaagcagtAACTATTATTGGTAGCGAGTGCATC--------GTGAGGT-CC-CTTTCTTCGCTTCTGACCGAAT-ACACTAAACACGCC--CTGCCGCGCCGCCGCCACCGCCGCCAT---CGGTTTTC---TCCCCC-----------Cttcgctccg-c--ccacttgcCTCAATTC--TGCAGACCGGCAAGAGCTATTGTCTGCGCCTCACGCTCTTCTCACAATGTTTTAGGCTCGCATGGCGC----CGAACATGTAAATTTTTCTCGA
i caeJap4.Scaffold17934 C 0 C 0

a score=-7939.000000
s ce10.chrX              4744321 32 + 17718866 CTGCATCCAAAATT---------TTCAGCCGGT--CA-CTCCAA
s caeRem4.Crem_Contig0   1652476 26 -  4500979 -gacagacCAAAC----------CTTTACTGGT--CA-TT----
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold622    376601 30 +   386604 --acAGGTTAAAAA--------CTCGAAACGGT--CA-TTTGA-
i caeSp111.Scaffold622  I 4 C 0
s caePb3.Scfld02_0       2991553 30 +  4147112 --ACaggttgaaaa---------ttgaaatggt--cattttga-
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   132485 38 +   591668 CTGGAAAtggaaagtgtttttttttccactgatACCA-C-----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10080114 24 + 21540570 I

a score=32278.000000
s ce10.chrX              4744353 230 + 17718866 ACTGATAGTGCTGATACATT-----------TCACAAGTGACAGGTCAGAGACAACTTCCATATGAACGAAAG-------------T-CATT--AAAACTAAATT-----CGAAACGAAACATTTTCA--------ACGGAACTTGCTAATATG----CTCC---------GTTCAG-----------------CTT-CAG---------AAAG-CCCATCTT-CAATTATCTTTC-CACTACTTCT-TTTCAAATTTCTCTCTTTTATGACAATGAAGAACGTGAGCAGCGTAATGAAATAGTTAATTAC---A----------AG
s cb4.chrX              10080138 244 + 21540570 ACTGATAGGAATGAAAGGTT---AC-----TTTGAA--TGACA-TCTTCG-------GGACAAGGAATGAAAGTGAGAG-------T-CATT----AATTAA----------------------------------CTGGAACTGCCAAATATGTATGCTCTTATGAATACTCTCGGTTTCCCGAACT------CTA-TAG---------AAAAGCGTCCCACGTAATTATCTTTTCTCATCcttctcttttcaaattctttcttTTATGACAATGAACAACGTGAGCTGCGTAATGAAATAGTTAATTAC---GAACCGCCGGCGA
i cb4.chrX              I 24 C 0
s caeRem4.Crem_Contig0   1652509 280 -  4500979 ACTGATAGGATGGAAAAAGt---acttcaatttgaaattgacaGGTTTCGAATGGGTGAACGAGGAAgggggggggAGGGT-----T-AATT----AATTCAaat-------gaatgaaacattttcgaaataactCCGGAACTACCTAATATGCAGTCTCT---------CCGTGGTTGATTGAACTATTTCACTT-TTG---------AAAAGCCCATCTC-CAATTATCTTTtcctttccttct-tttcaaatttctctcttttatgACAATGAACAACGTGAGCTGCGTAATGAAATAGTTAATTAc---g---tgagagaga
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold622    376631 254 +   386604 TATGATACGACTGATATGTTCAGAAgtgatattgaaaatgacagATTGTGAATG---ACATAACGAAGGAAAGAgcaat-------t-aatttcaaaatttgagt---------------------tgcatt----tcaaaacatttgaatatgAGTTCTCT---------CCTTGGTTGATTGAACTATTCCAATT-CAA---------AAGGCCCCATCTC-CAATTATCTTTTGCTCTCCTC---ttttcaacatc-ttcttTTATGACAATGAACAACGTGAGCTGCGTAATGAAATAGTTAATTAC---G----------AG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2991583 271 +  4147112 tttgatagTAGTGATATGTTCAAAATTGCATATCAAAATGACAAGCTCCAAAC-------------ATGGAAGAgtaat-------taaattttgaaagtagGGTGGAGGAAGAGTGAGAATTTGCTACATTCA--CCGGAACTGCCTAATATGAATGTTCT---------ATGAAGATGATTGAACTATTCCCCCCACAG---------AAAGCCTCATCTC-CAATtatctttt-ctttcctc---ttttcaaattc-ctcTTTTATGACAATGAACAACGTGAGCTGCGTAATGAAATAGTTAATTAcacgg----------ga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   132523 193 +   591668 -ACGATTGGTTTCGATTGAT-----------TTGAA--TGACAGTTCGTTGAC-------------AAGAAAGGGCATTTTTCATCT-AATTTCAAAAGTCATTG-------------------------------CCAA-----------------TTTTG---------ACTCGGTTCATTGG-------------TAGTGAGAGAGCAAAAGTGTATC-C-CAATTATCCTTC------------TTTCCA---------TTTTATGACAGCCACGAACGTGAGCTGCGTAATGAAATTGTTAATTAC---G----------AG
i caeJap4.Scaffold17934 C 0 I 3003

a score=99263.000000
s ce10.chrX              4744583 247 + 17718866 AGAGAGAAAGAAAGATGTGCTCTCGAGTGACATGC-AATGTCTACTTTTGA---------CCCC--------TCAA------TTCCATATAAGAAACTTCTAGTACTTGAGTGACCGGCCACCAACCTTGG--TATGTACAAA----------CCATCGTAAAAC-----CACCTGATTCATATCTCGAGATTTATGAA----TATACATTTATTTATTTGCT-----CTCCGAAAACAGGGAAATTTTA-TTTCCCAATC--GAGAAATAAACACTGTCATTAGGCTATCTATCTCTTA
s cb4.chrX              10080382 235 + 21540570 AGAAC------AAAATGTGCTCTTGAGTGACATGC-AATGGCTACTTTTGA---------CCCTCATCCT------------TTCT--ATAATAAACTTCTAGTACTTGACCATC------TCAACCTTGGTATATGTACAAAA---------CCATCGTAAAATGCGCACACCTGATTCATATCTCAAGATTTATGCATATTta----------tatttgccaatttctatGGGAACAAAGCATTTTTATTTCCTTGATTACGAGAAATAAACATTGTCA--------TATCTGTTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1652789 238 -  4500979 agaaa--aaggaagatgtGCTCTCGAGTGGCATGC-AATGTCTACTTTTGA---------CCCTTATCCCT-TCATTCACTATTCC--ATAAGAAACTTCTAGTACTTGAATGACCGGCCATCAACCTTGGT-TA-GTACCAAC---------CAATCGTAAAAC-----CACCTGATTCATATCTTGAGATTTATGCA----TC----------TATTTGCC-----CTCTGGGAACATG--AATAAAAATTCCTTCATT--GGGAAATAAACACTGTCA--------TCTATCTCTCA
i caeRem4.Crem_Contig0  C 0 I 200
s caeSp111.Scaffold622    376885 241 +   386604 AGGGG------AAGATGTGCTCTTGAGTGTCATGC-AACGGCTACTTTTGACCCATCCTTCCCTCCTTCATGTTCT------TTCA--ATAAGAAACTTCGAGTACTTGAATGACCTACCATCAACCTTGG--TATGTACAAAA-------CCCCATCATAAAAC-----CACCTGATTCATATCTTGAGATTTATGCA----TA----------TATTTGTC-----CTCTGGGAACATG----CAttaatttctcgaat--aagAAATAAACACTGtcat-----tttctatctctcG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2991854 241 +  4147112 agaag------aagatgtgctCTCAAGTGACATGCGAATGGCTACTTTTGA---------CCCTCAtccat-tctt------ttca--ataaGAAACTTCGAGTACTTGAATGACCGGCCATCAACCTTGG--TATGTACAAAACCTTcccccccATCATAAAAC-----CACCTGATTCATATCTTGAGATTTATGCA----TA--------TTTATTTGTC-----CTATGGGAACATG----CATTAATTTCTTGAAA--GGGAAATAAATACCGTCAT-----CTTCTATCTCTCA
i caePb3.Scfld02_0      C 0 I 648
e caeJap4.Scaffold17934   132716 3003 +   591668 I

a score=-11011.000000
s ce10.chrX              4744830 296 + 17718866 TGGAAAAAATGACGATTGAAATGGTGAATTCTGTAA---CATAGAAGCTTATGTTTGTT--CAATTACAAA---ACATCAAAATTTGAAGACAAAGAACATGAGAATGTA-----TAACTGTTCAATGAGTCA-TTGATAAAATGTCAAGAAACAAATTCTTCGACAAAAAAATAACTAATGGAAAACAA---ATACACCATACAAGGGTTTTAATATTTTCTCAAAGCTTGCAAAAGGTTAATG----GAATATCAGAAAGTTA-GAAGCATAGTGTC------AAGTTTTCAGAAATTAATGAACTTAAACCAACTGGAAGT-
s cb4.chrX              10080617 207 + 21540570 ------------------TGGCAAaaaacttctt-----caaaaaaagacGTGTTTGTTTCAAAGAACaaagaaatctcaaaaatt------------cattggAATCTT-----CAAATTTGTGTTTGGTCA---GGTCAAata--gaaaag-------tttaaaaaaaa---------tggaagtttg---ATTCAATAAATCAGATTTATGTTTAAAACGAAACGAATTGAAGAGGAGATTC--------aacaaagatttttgaaaaatggaatt----------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    377126 295 +   386604 ---AATACACAGtaatc-aaacaaaaaaccttttgttcctacaagaagaaaaaactgtt--agAGGCCAAAATCATCTTCAGATTT---------GGAAATTGGGGTttgttgaataaaaatgtatttgTTCAATTGGcaaaaca--aaagaagcaatgttttgaaatgaa---aaattctcaaagtTTGTGAATTCTTACGAAAAGCGTTCTGACTCGTACTAAACATTT-----AGGAAATTccgatgaaaaatcaaaatttctcaaaaagagcATCAGACGGAAGATTTCA-----TACTAAACTCAAACTAGATTGAAAGT
i caeSp111.Scaffold622  C 0 I 22
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=-832.000000
s ce10.chrX              4745126 204 + 17718866 TTACCGTAAAGAAAGAAAATATGAGGGTTAGCATACTGAAAAATGCATTAAAAGTCATAATTAATTAAACCTTAGTTTTTTTAGATCGGGGTCGTTATGAATCTAGTTGAACGAAAATTGGTACTACAGCTCAATAAAACAAAACTGTCTCAAAAACTAAAACGAACTCATTGAAAATCCTTTCATGCAACGGG---CATGGCAATT
s cb4.chrX              10080824 144 + 21540570 ttgaaggtggagaagaaaat-----------------gagaaacgtTTT------TGTAACTCAAAAGTCTCGAAATTGTTCAGGT----GTTTCTCTGAATC-------------------------ACTCCAAAATATGACTCTGTTCCG----CTAAAACTATTTTAT----AATC---TAATAGAACGTGATATATAGCAATT
i cb4.chrX              C 0 I 31
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e caeSp111.Scaffold622    377421  22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=0.000000
s ce10.chrX              4745330 31 + 17718866 CTCAAAATTGACGACCGTTAAGGTACTCATG
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e cb4.chrX              10080968 31 + 21540570 I
e caeSp111.Scaffold622    377421 22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=1897.000000
s ce10.chrX              4745361 117 + 17718866 ACTTTTGCTCCCCCAAAAAA----ATTCCGAATTTTCAGTTCTAAAAGCTCAATATTAAAGTTGCAGTACGGTCAATGGGTAAAAGATTAAA-----GACTTTTACTAATTTTATCTTCTTTTTTT
s cb4.chrX              10080999 113 + 21540570 ATTTCTATTAAAGCAAAAAACGGTATTTCGAgttctgtttttaaaaaattcaaca-------------actCTCAATAtacaaaacatttaaaaattgaccttttttaattttatttgtattttat
i cb4.chrX              I 31 I 33
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e caeSp111.Scaffold622    377421  22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=0.000000
s ce10.chrX              4745478 57 + 17718866 TTGATTATTTCCCCACTGACCGTACTCCACCTTCAATTAACACATAATTTCTCTTCT
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e cb4.chrX              10081112 33 + 21540570 I
e caeSp111.Scaffold622    377421 22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=-2389.000000
s ce10.chrX              4745535 325 + 17718866 AGTAATATTTTATTTTCAAACTTAAAAATTTCAGTCTTGAATATTATTGCCTGTAAATCTGTTTATTATATTGAAAATTAAATTTGAAACTAATAGAAGTTATGGTGTTCCTCTTGAGTTTTCAATACAGATTATTTTTTAGAGTATAGAGTAATGTTTGGAGGCAACGATCGTGAAAACAAAGTACCCAGTTGCTTGTGGTAGAATGTTCATAAAAAATTGCAATGAAGCTTCTGAACAGCAAAATTATTTCAGCAAATCTGAACGTTCAAAATGAAGCAGCCAAATTCTGACAGGACGTTGTAAACAAGCTAACTTAACCGTT
s cb4.chrX              10081145 169 + 21540570 AGTGACGTTTTACT-----------AGAT--------------------------AACCAGtatgaaataagaaaaaaatgatttgaa-------------------------------tttcaaaa------atctttcaaagtttgaagaaattt-----------aatCATTACAA-------------TGCTt-----------------aaaaattg-----------------atcattttttgttcagaaaattcg------------------------tttttataGGAagttttgattataaaaaaataatagtt
i cb4.chrX              I 33 I 55
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e caeSp111.Scaffold622    377421  22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=0.000000
s ce10.chrX              4745860 2 + 17718866 GG
e caePb3.Scfld02_0       2992095 648 +  4147112 I
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e cb4.chrX              10081314 55 + 21540570 I
e caeSp111.Scaffold622    377421 22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=766.000000
s ce10.chrX              4745862 71 + 17718866 TTCGAAGGTTGCCCCAAATTTTTA---GTGGCACAATCCCTCTTAGCATAACAATTCTGCCACGAGAATCTATG
s caePb3.Scfld02_0       2992743 63 +  4147112 tttgaacttttctcaaaacctcTAAATGGAGCATAGTACTTCTTGAAAGAACCAC-----------AATCTACA
i caePb3.Scfld02_0      I 648 C 0
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e cb4.chrX              10081314 55 + 21540570 I
e caeSp111.Scaffold622    377421 22 +   386604 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=577.000000
s ce10.chrX              4745933 3 + 17718866 AAA
s caeSp111.Scaffold622    377443 3 +   386604 AAA
i caeSp111.Scaffold622  I 22 C 0
s caePb3.Scfld02_0       2992806 2 +  4147112 -AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e cb4.chrX              10081314 55 + 21540570 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=-3393.000000
s ce10.chrX              4745936 11 + 17718866 CCTATTTTGCA---
s cb4.chrX              10081369  8 + 21540570 CCCACTTT------
i cb4.chrX              I 55 C 0
s caeSp111.Scaffold622    377446 11 +   386604 ---ACTACATAATA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2992808  5 +  4147112 ---AC------AAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   132716 3003 +   591668 I
e caeRem4.Crem_Contig0   1653027 200 -  4500979 I

a score=-3863.000000
s ce10.chrX              4745947 140 + 17718866 TATTTGCTCAAATCCGCCAAATCAGGCTACCATCAAAG-------------GATGAGCACA----TTT--CCATTACCTAATTAG--CAGGTGACCCGCATGTT------------TGCACACACCAAGACCATGCACTCCCTTTATCCCAACAGCTGCATGTGTTGTGTTA--------C
s cb4.chrX              10081377 128 + 21540570 TATTTACTC-TATCCGGTAAAT---GC--GCGTCTATTTAAAAGGCG------TTCGCCTC----TCC---CATTACCTAATTATACCATATGTTC-ACCTGCTCTCATCCCTA------------TTTGCCATGCACTCC-------------CCAATTCcggcttttcaa--------a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1653227 142 -  4500979 TATTTGCTC-AATCcggtaaa--------------attcaaaaagagcCGAGATGAGCATA----TCC--TCATTACTTAATTAG--CAGGTGTTCAACCAGCTTGTGTTCCGA---ATGTTTACCTTATCCATGCACCCC-------------TTCATATTTTGTTCCTAACAGACAACA
i caeRem4.Crem_Contig0  I 200 C 0
s caeSp111.Scaffold622    377457 141 +   386604 TATCTCATC-AAAACCATAAA--------CCGTCTATGCAAACCTCG---AGAAAAGCATTCATCTCTGCCCATTAGCTAATTAA--CAGGTGTTCTACAAGCT--------GATCCGTGTTTACTCAAACCATGCACTCC-----GACTACTTCTCACATCTGTTTC-------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2992813 134 +  4147112 TATCCCTTC-TGTCCGCTAAA--------CCTTCAAAG-------------GATGAGCACT----TCCATCCATTACCTAATTTG--CAGGTGTTCAACAACCT--------GAACCATGTTTACCCAGACCATGCACTCC-----TTCTAATATTCCCATCTGCTTCAAAA------CCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   132716 3003 +   591668 I

a score=273340.000000
s ce10.chrX              4746087 388 + 17718866 AAAAAC-AGTACTTACGAAATGACTTTTGTACCATCATAACACATTGTCGGATTCAGAACAACTCCCGAGTGATCACAGATTTTCCTTCCGAGTCGGTCCCACGTTTTTGCAGAAAGTTGAAGCTGTA-----------AAAATTGAA-----------TGATGATTGTTATCATTATGCAAT---TGGTGCGCGATGCACAAAGAGCACGCCGACAACAGAAACTGACCTCTCTCACGGCTCCGTCTCCTCGGGAAACGAACGGTCCTGGCGACTGAAAGTGAACAGAGTGCTTTGATGGATGAATGATCATCTCGCCAAGCGGACCGCACGAGTTGAACACGTGCTCCGCGTAGACATATGACTTGCGTTCGATGAAAATTCGAATTACAGAGAAGATGGTTTTCTTGAGCT
s cb4.chrX              10081505 409 + 21540570 aaacac-atcaCTCACTTGATTACTTTTGTTCCATCGTAGCACATTCCAGGATGTACAACCACACCTGTATGGTCACAGATTTTTCGTCCAAATCGGTCCCACGATTTCGCCGAGAGTTGAAGCTGTAAAAAGTTGG--AAAGTTGGAGAGTAAACAATGAGTGATGAGTCCCATTACGTAACGGAAGATGCGCGGGGTACAAAGAGCTTGCCGCCA--AAAAACCAACCTCTCTTACTGCACCGTCTGCTCGAGAAACGAACGGTCCTGGAGAGTGAATGCGCGCCACGTGTTTCGATGGATGTATTATCATTTCTCCAAGTGGACCACATGCTTTGTAAACGTATGCAGCATATTCAAATGATTTCCGTTCAATGAACAGTCGAATAACAGAAAATATTGTCTTTCTAAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1653369 409 -  4500979 AAACATGACTACTTACTTAATTACTTTGGTTCCATCAAAGCAATATCCTGGATGCAGAACAACGCCTGTATGATCacaaatttttcttccaaaccgGTCCCACGACTTTGCCGAAAGTTGAAGCtgtaaaaaattgg--aaagttgaaaacatcaaaaggAGGGAACGGAGTGATTATGCAAT---AAATACGGACTGCACAAAGAGCTCGCCGACAGCAGAAACCAACCTCTCTCACGGCATTGTCTGCTCGGGAAACGAACGGTCCAGGCGAGTGGATTTGAGCGACATGTTTTGATGGGTGAATTATCATCTCTCCTAGCGGTCCACAAGATTTGAACACCTGTTCGGCGTACAAAAACGATTTTCGTTCGATGAAAAGTCGTATGACGGAGAAGATGGTCTTTTTGAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    377598 396 +   386604 TAACAC-AAAACATACGTGATCACTTTTGTTCCATCAAAACACATCGCTGGATTCAAAACCACTCC---ATGATCGCAAATTTTCCCTCCAAAACGGTCCCACGACTTGGCAGATAATTGAAGCTGtaaagttttggaaaaagttaGA-----------GGGTGATGAGTTTTATTATGTAAT---CAAGGGTCTCTCCTCAAAGAAAATGCCGACCATAAGAACTGACCTCTTTTACAGCGCCGTCTGCTCGAGAAATGAACGGTCCGGGGGAATGAAGGTGAGCAACGTGTTTTGATGGGTGAATTATCATCTGGCCAAGAGGTCCACAAGAGTTAAACACGTGTTCGGCATATACAAATGATTTACGTTCGATGAACAGACGGATTACGGAGAAAATCGTCTTTTTCAGCT
i caeSp111.Scaffold622  C 0 I 38
s caePb3.Scfld02_0       2992947 395 +  4147112 CAAGAC-AGTACTTACGTGATGACTTTTGTGCCATCGTAGCACATTCCGGGATGCAAAACAACTCC---GTGATCGCAAATTTTTCTCCCAAATCTGTCCCACGACTTTGCGGAAAGTTGAAGCTGTAAAG-AGTGGGAAAAGTTGAT-----------GAATGATGAGTTATATTATGCAAT---CGAAATGCACACCACAAAGAGAGTGCCGACAACAGGAACTCACCTCCTTCACTGCACCGTCTGCTCTTGAGACAAATGGTCCTGGGGAGTGGAAACGAGTCACGTGCTTCGATGGGTGGATTATCATTTGTCCAAGAGGTCCACAAGAATTGAACACGTGTTCGGCATATACAAATGATTTTCGTTCGATGAATTGACGGATTACTTGGAAAATTGTCTTTTTGAGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   135719 394 +   591668 aaaaga-accaCTCACGATATGACTTTTGTTCCATCAAAGCACAGTGTCGGGTGATAAACAATTCCATTGTGTTCGCAAATTTTTCTGcccaatttttcccacatttttgtCGAGAGTTGTAGCTGTAAAG-TTTGT--ACACATCAA-----------TAGTACTGCGTTTTGTTGTGCAAT---CAAAAAGAGTTC--AAAAGAGTACGCCGACAACAGCAACTGACCTCTCTTACTGCTCCGTCTGCGCGAGAAACAAACGGTCCCGGTGAGAAAAGGTGAAAAATGTGCTTCGACGGGTGAATAATCATTTCTCCAAGCGGACCACAAGAGTTGAATACGTGTTCAGCGTAGACAAATGACTTTCGTTCGATGAATAAGCGGATGGCAGAGAATATGGTCTTTTTTAGCT
i caeJap4.Scaffold17934 I 3003 C 0

a score=2689.000000
s ce10.chrX              4746475 6 + 17718866 GCAAGA
s cb4.chrX              10081914 6 + 21540570 GGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1653778 6 -  4500979 GTAAAA
i caeRem4.Crem_Contig0  C 0 I 38
s caePb3.Scfld02_0       2993342 5 +  4147112 -Gaaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   136113 6 +   591668 GAAAAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    377994 38 +   386604 I

a score=-1383.000000
s ce10.chrX              4746481  9 + 17718866 ----ATAGATAAA
s cb4.chrX              10081920  5 + 21540570 --------ACCAa
i cb4.chrX              C 0 I 32
s caePb3.Scfld02_0       2993347  8 +  4147112 -----ttgattga
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   136119 13 +   591668 GGAATTAGATgat
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold622    377994 38 +   386604 I
e caeRem4.Crem_Contig0   1653784 38 -  4500979 I

a score=-69.000000
s ce10.chrX              4746490 12 + 17718866 ATCATGAGGAAA
s caePb3.Scfld02_0       2993356 10 +  4147112 a--ataagaaaa
i caePb3.Scfld02_0      I 1 I 18
s caeJap4.Scaffold17934   136132 11 +   591668 -acattttaaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10081925 32 + 21540570 I
e caeSp111.Scaffold622    377994 38 +   386604 I
e caeRem4.Crem_Contig0   1653784 38 -  4500979 I

a score=-4248.000000
s ce10.chrX              4746502 264 + 17718866 GGGGTCGGA---TAAAATAAAAACGTG-------------ATTATTTGAAACAAGA-------------------------------------TGTCATTATAGTA-----------------------------ATGATTAATG--------------------------------ATGTTCAGAAAATTCAAA---AACTGaaataaataatat-ataaataa-----------------tttattGCAAAATTCAAATT--------GTCTCGTT----ATGTTTTTTCTTCAAAAAAT--GATTTTTATTCGAGCAGATATTTAAATAAGATATAAGATATTTGCT--------------------AATATAGTTTTTTTTATTTGA------ACAAA---------AGAATTTACAATTAT------------------GAATTACAATTTGGGTTGATTT
s caeJap4.Scaffold17934   136143 466 +   591668 acgaTACGACTCTGCTCTGCAAACGTGCTCTAGCGCACTaagtatttgaaaaaaaagtaaacaaGTTCCAAGGCACGGGAAGCTGGCGACTGCTCTCACAAAAGTGTGCTCCATTGAACTCGGTGGaaaaaaaTCATGGCTATTGTGAACACAAAAAAgtggcaacgcggtgtttgcgtacttttgaaattcaaacggcaatgaaagaaatagcatggcaaatgaagagatttgttcccattttcgtttgaattttcaaagtacgcaaacaccgcgttgcaaattttttgttttcacaatattgtgtttttaatcgacctgcgacatgaaaacggaagtctgcattcaccgttctgtctgcgcctctttaaatatcactgtgttcgcgtggccgcgcacaaataagtgggcggagtttcgcgttatcatgtcgcaagtcaattggaaacacaatatgtgccaattt
i caeJap4.Scaffold17934 C 0 I 269
e caePb3.Scfld02_0       2993366  18 +  4147112 I
e cb4.chrX              10081925  32 + 21540570 I
e caeSp111.Scaffold622    377994  38 +   386604 I
e caeRem4.Crem_Contig0   1653784  38 -  4500979 I

a score=0.000000
s ce10.chrX              4746766 240 + 17718866 TATTTTTTTAATTttaaagatgtggtatcgtcagtggaagagttgcttgaaactgaatacagtgctaaaatgtacaaatatcattctaaaaattttgaaaaaGTATTGACAATTCCGATGTCAACTATCATAATTTTAGATGTCGGCCACAAAACatttttttaaataacattttaaatatttttatctaaatataCGCTTCTTCATATCATTTCTTAAAAATGTTTTTGTCACACTTTT
e caePb3.Scfld02_0       2993366  18 +  4147112 I
e caeJap4.Scaffold17934   136609 269 +   591668 I
e cb4.chrX              10081925  32 + 21540570 I
e caeSp111.Scaffold622    377994  38 +   386604 I
e caeRem4.Crem_Contig0   1653784  38 -  4500979 I

a score=366.000000
s ce10.chrX              4747006 15 + 17718866 AGAAAATTAAACAAT
s caeRem4.Crem_Contig0   1653822 15 -  4500979 aaaaaattttgcgtt
i caeRem4.Crem_Contig0  I 38 C 0
e caePb3.Scfld02_0       2993366 18 +  4147112 I
e caeJap4.Scaffold17934   136609 269 +   591668 I
e cb4.chrX              10081925 32 + 21540570 I
e caeSp111.Scaffold622    377994 38 +   386604 I

a score=-745.000000
s ce10.chrX              4747021 5 + 17718866 -AATT---A
s caeRem4.Crem_Contig0   1653837 8 -  4500979 -AATTTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   136878 5 +   591668 aaata----
i caeJap4.Scaffold17934 I 269 C 0
e caePb3.Scfld02_0       2993366 18 +  4147112 I
e cb4.chrX              10081925 32 + 21540570 I
e caeSp111.Scaffold622    377994 38 +   386604 I

a score=726.000000
s ce10.chrX              4747026 2 + 17718866 AA
s caeRem4.Crem_Contig0   1653845 2 -  4500979 GA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       2993384 2 +  4147112 AA
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17934   136883 2 +   591668 aa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10081925 32 + 21540570 I
e caeSp111.Scaffold622    377994 38 +   386604 I

a score=-243.000000
s ce10.chrX              4747028 4 + 17718866 AACT
s caeRem4.Crem_Contig0   1653848 3 -  4500979 GAT-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold622    378032 4 +   386604 AACT
i caeSp111.Scaffold622  I 38 C 0
s caePb3.Scfld02_0       2993386 4 +  4147112 AACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   136885 4 +   591668 aacc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10081925 32 + 21540570 I

a score=415644.000000
s ce10.chrX              4747032 805 + 17718866  
s cb4.chrX              10081957 789 + 21540570  
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   1653851 790 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    378036 792 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2993390 798 +  4147112  
i caePb3.Scfld02_0      C 0 I 1085
s caeJap4.Scaffold17934   136889 846 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-645.000000
s ce10.chrX              4747837 12 + 17718866 AAATAATTTCTC
s cb4.chrX              10082746 12 + 21540570 AAAAGATTTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1654641  5 -  4500979 -------ttcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    378828  2 +   386604 ----------AA
i caeSp111.Scaffold622  C 0 C 0
s caeJap4.Scaffold17934   137735 12 +   591668 AAAAACATTCGC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2994188 1085 +  4147112 I

a score=-47034.000000
s ce10.chrX              4747849 295 + 17718866 ACTACT-------------------ATTTTCGGAAGAAGTAATGTTATA------CATTAATAGAAATTTAAAAATTTTTTGAAATTTTTCAAACTGTTCGGTCAAAGTTTTGGTATGTTG------------------CCAAATTATTCA-------------------------------------------AAACAATTGTTTTTGACCGTTTTAGCAGGCCAAAGATACCGAACGCTCAACTTTTAGT------TTAATCTGCC------------------------------CTTTGTTTGAACCCCTAGAG-------------------GGTTTTAATTTAAGT--------AAATTTAAGT-----AAACCACACTTTAAATCTCGT--------AGTAAATTATTGTTGGTACACTTCCAGCAAACTTTGTT--ACTGTAAATTTAAAA
s cb4.chrX              10082758 416 + 21540570 TTTGTAATATGGGAATTAAGGTTTTTGTTTGATATTCAAGTAAATTCGGATCACGTAATAGTGGAAA--------Tttc------taactgaaaaatataatttgaaGTAAAATTACGCTCATTCTGGGAACTGTTCAACCAATACGTTCAAACACTGCTAATGACAAAAATCGCAACAATTACTGTCTGTATTTGAGAAATATTCTTGGATGtttcttcaattaaaaaa----------------attaat------acgATCCCTCGaataaaaatctttgaaaagttatttgacaccaaattctcatttttaaagCATTTCTGTCAACATCACGTGTTTTACGATACGTGAAAATTTAAGCTTGGTTCGGGGGGATCGGGTTTT-----Ccacagttgaaaaaaaatctgaaatttcagaactttttctaaactttttt--tttctaaacttagaa
i cb4.chrX              C 0 I 145
s caeRem4.Crem_Contig0   1654646 178 -  4500979 attgca-------------------TGTTTGAAAATC------------------TAATAATGGAAA-------------------AAGCAAGCCAGATGATCGGAAATTATGATAAGCTC------------------------------------------------------------------------------------------------------TAAAaca----------------tttgac------attttcac--------------------------------cCAGGTTTTCTTTTATAAAG--------------------GTATTAC---------------AGACCTGGTT----------------------------------ACAAAATTACTATTTCTCCGTCACTGCTCGATTTTATGGACTACTTGGGTTAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    378830 181 +   386604 GCTACC-------------------agtttaaaaatagatta-------------tGATAACGAGAAGACAGTAGTTTC------TTTGCAAA------AAGCTTAGATTATATTATAATC-------------------------------------------------------------------------GGGTTAACTTTGTTTCATTTATGTGCAGGTAGAAC------------------TTAACGGTagaataatca---------------------------------aaaagttttcaactcagaaa------------------------------------------aaatttatct------------gtttt-----tcat--------gaagactcacta-------------------------------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2994188 1085 +  4147112 I
e caeJap4.Scaffold17934   137747   0 +   591668 C

a score=-4723.000000
s ce10.chrX              4748144 51 + 17718866 AAATTACAAAAACGTTTTTCTATGATCCCCCCCCCCCTCCCAAATATTTTT
s caeRem4.Crem_Contig0   1654824 35 -  4500979 -AGTTTCTA------TTTTGTAAAA----CATTTCATAATCAAACA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    379011 12 +   386604 ------------------------------------aaattaaaaatt---
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2994188 1085 +  4147112 I
e caeJap4.Scaffold17934   137747  0 +   591668 C
e cb4.chrX              10083174 145 + 21540570 I

a score=54.000000
s ce10.chrX              4748195 1 + 17718866 A
s cb4.chrX              10083319 1 + 21540570 A
i cb4.chrX              I 145 C 0
s caeRem4.Crem_Contig0   1654859 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    379023 1 +   386604 t
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2995273 1 +  4147112 A
i caePb3.Scfld02_0      I 1085 C 0
e caeJap4.Scaffold17934   137747 0 +   591668 C

a score=105488.000000
s ce10.chrX              4748196 141 + 17718866 ACTCACCTGTCGTAAAAGCAATTGCATCGCGAAATGGTTCTACTAGCCTCACTTGCATGTTTTTCACTTCCACAGTGAGGGTATAGTTTCCCTTTTGTATCAAGTCATCTGTATTGCAGTCGCATGTATATTCTTCCTAAA
s cb4.chrX              10083320 141 + 21540570 ACTCACTTGTGATAAAAGCGATTGCATCACGAAAGGGCTCTACTAACCGCACTTGCATATTCTTGACTTCAACTGTCAATGTGTAGTTGCCCTTCTCCAGAAGATCCTTGTCGTTGCAGTCGCATGTGTACTCATCctgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1654860 141 -  4500979 ACTCACTTGCAACAAACGCGATGGCATCTCGGAACGGCTCTACGAGTCGAACTTGCATATTTCTGAGCTCTACTGTCAGCGTGTAGTTTCCCTTTTCAAGCAAATCCTCTGCATCGCATTCACATGTGAATTCATCCTAAA
i caeRem4.Crem_Contig0  C 0 I 75
s caeSp111.Scaffold622    379024 141 +   386604 actTACTCGTCATATACGCGATTGCATCACGAAATGGTTCCACAAGTCGAACTTGCATGTTCCTGACTTCAGTTGTCAGAGtgaaatttcctttttcggtCAAATCAGCAACGTCGCATTCACATGTGTATTCGTCCTGTG
i caeSp111.Scaffold622  C 0 I 10
s caePb3.Scfld02_0       2995274 141 +  4147112 ACTTACTTGCAACAAAAGCTATCGCATCTCGAAATGGTTCCACAAGTCGTACTTGCATATTTCTGACTTCTATCGTTAAAGTgtagtttcctttttctgtcaGCTCTTCTACATCACATTCGCACGTGtattcttcctgaa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   137747 141 +   591668 ACTCACTAGTGGTAAATGCGATAGCATCTCTGAATGGCTCCACGAGTCGCACCTGCATGTTTTTGACCTCAACAGTCAGAGTGTAGTTGGCCTTTTCGAGCATATCACTCCCATTGCAATCGCAGATCACGTCCTCCTGAA
i caeJap4.Scaffold17934 C 0 C 0

a score=-1161.000000
s ce10.chrX              4748337 14 + 17718866 AATTTA---AAATATTG--------
s cb4.chrX              10083461 17 + 21540570 aatttactcaaaattca--------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    379175 14 +   386604 aattca---aaattttt--------
i caeSp111.Scaffold622  I 10 C 0
s caePb3.Scfld02_0       2995416 14 +  4147112 aatcca---aaattttc--------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   137888 15 +   591668 ----------AATGTTtcagtattg
i caeJap4.Scaffold17934 C 0 I 1154
e caeRem4.Crem_Contig0   1655001 75 -  4500979 I

a score=-3148.000000
s ce10.chrX              4748351 17 + 17718866 AATATTA------TTCCAAAAAT-
s cb4.chrX              10083478 20 + 21540570 aatatttgt----aTATCATAGTC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    379189 13 +   386604 aat----------tcactCAAAT-
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2995430 23 +  4147112 gttttttgcatcattactacagt-
i caePb3.Scfld02_0      C 0 I 79
e caeJap4.Scaffold17934   137903 1154 +   591668 I
e caeRem4.Crem_Contig0   1655001 75 -  4500979 I

a score=-2232.000000
s ce10.chrX              4748368 32 + 17718866 TCTCAACTCTCTC-----------TTTTTAGTTACTCAACCAT
s cb4.chrX              10083498 41 + 21540570 CCTTACTGCGCACTAGggtcattgtttttttttctaatatt--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold622    379203 37 +   386604 --TTATATCTCTATGAAAAC----CTTTTAGATCCCGTATCAC
i caeSp111.Scaffold622  I 1 C 0
e caePb3.Scfld02_0       2995453 79 +  4147112 I
e caeJap4.Scaffold17934   137903 1154 +   591668 I
e caeRem4.Crem_Contig0   1655001 75 -  4500979 I

a score=-4833.000000
s ce10.chrX              4748400 29 + 17718866 ------AAAT--CTAATATAATCAGCGAATTG----AAACT
s cb4.chrX              10083539 31 + 21540570 ------aaGT--TTCTCTTGATCTGTGA--CGcttcaaata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1655076 27 -  4500979 ------AAGT--CCCCAAAAATGGGCGA--TG----ACATT
i caeRem4.Crem_Contig0  I 75 C 0
s caeSp111.Scaffold622    379240 22 +   386604 CCAAACAAGTTACTCGCTTGAT-------------------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2995453 79 +  4147112 I
e caeJap4.Scaffold17934   137903 1154 +   591668 I

a score=-7750.000000
s ce10.chrX              4748429 40 + 17718866 ----------------------------------------GTTTTCGCTTTATACC------------ATTTC-----TGATTTTTCAACACCTGTC
s cb4.chrX              10083570 59 + 21540570 ttttctgattta-taATTGTTCT-----------------------GAATCACACC------------CAGTC-AACGTGAACTAGTGTCACTT-TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1655103 84 -  4500979 GTCTCTGACTTACCAATTGTTCGACTCTGTTATTCTTGGAATGCCAGAACCACATC------------TATTCTTGAGCGAAACAGTGTCACTT-TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    379262 82 +   386604 --TTCTGACTTC-TTACCATTCA----------GTTTAGTTTACCCGACTGACGCCAAaacacttgt-ttttttcgtgtGAACCAGTGtcactt-tc
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2995532 70 +  4147112 -GTGTTCGCT------------------------TTTAGTATACCAGACTGACGCC-AACCACTTATGTTTTTCCGTGTGAACCAGTGTCACTT-TC
i caePb3.Scfld02_0      I 79 C 0
e caeJap4.Scaffold17934   137903 1154 +   591668 I

a score=183895.000000
s ce10.chrX              4748469 677 + 17718866  
s cb4.chrX              10083629 717 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1655187 673 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold622    379344 665 +   386604  
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2995602 694 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   139057 703 +   591668  
i caeJap4.Scaffold17934 I 1154 C 0

a score=-3035.000000
s ce10.chrX              4749146 26 + 17718866 CAAAAATATAAAAGAAATTCCGCAAA
s cb4.chrX              10084346 15 + 21540570 ----------caa-agatatcgtaag
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold622    380009 18 +   386604 --------TACgagaaataccgtgag
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2996296 16 +  4147112 ---------GTGA-AAAGAATGCGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   139760 25 +   591668 -aagaaaacgagagaaagagaagaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1655860 14 -  4500979 I

a score=85343.000000
s ce10.chrX              4749172 417 + 17718866  
s cb4.chrX              10084379 385 + 21540570  
i cb4.chrX              I 18 I 2
s caeRem4.Crem_Contig0   1655874 398 -  4500979  
i caeRem4.Crem_Contig0  I 14 I 2
s caeSp111.Scaffold622    380027 352 +   386604  
i caeSp111.Scaffold622  C 0 I 108
s caePb3.Scfld02_0       2996312 382 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   139785 376 +   591668  
i caeJap4.Scaffold17934 C 0 I 815

a score=-1908.000000
s ce10.chrX              4749589 10 + 17718866 TATCTTTTAT-
s cb4.chrX              10084766  6 + 21540570 TTGCAT-----
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1656274 10 -  4500979 TAGTTTCTAT-
i caeRem4.Crem_Contig0  I 2 I 210
s caePb3.Scfld02_0       2996694 10 +  4147112 -TGTTTTCCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   140161 815 +   591668 I
e caeSp111.Scaffold622    380379 108 +   386604 I

a score=9.000000
s ce10.chrX              4749599 40 + 17718866 TGTTTGTTTCTTA----GTTTTGC-ACCCAACTACTCCATTTTTA
s cb4.chrX              10084772 41 + 21540570 ----TGCTTCATACATTGCTTTGCTAATAAAATagtttattttca
i cb4.chrX              C 0 I 733
s caePb3.Scfld02_0       2996704 30 +  4147112 ---AGGTTTCCGA----GTTTTTCTAA--------TCTATTCCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   140161 815 +   591668 I
e caeSp111.Scaffold622    380379 108 +   386604 I
e caeRem4.Crem_Contig0   1656284 210 -  4500979 I

a score=6.000000
s ce10.chrX              4749639 5 + 17718866 AGAGT
s caePb3.Scfld02_0       2996734 5 +  4147112 CAAAT
i caePb3.Scfld02_0      C 0 I 212
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I
e caeSp111.Scaffold622    380379 108 +   386604 I
e caeRem4.Crem_Contig0   1656284 210 -  4500979 I

a score=0.000000
s ce10.chrX              4749644 487 + 17718866 TCGTTTCTAGGTTAGCTGGCAAATTGTTTTTATTTGTTATTTTGTAGTTTTGCAGTGCTATCGGTGAAAATAACCAGGTTGTCAATTAGACTAATGGTGTGCAAAACTGAAAGATTGAATGTATTGAAAGTGGTAATTTTTCAAAATACAGTAATAATAGTCCAGCATTAAAAAATATCAGAGATTAAGAAATCAAAATGTGACAGAAGGATGCGGGCGAGGAGATTTTAGATTATTAGGCAGAATACGGCCAGAACTATTGTGTATGTAGGCTTATAAAACATTGACCATTATATTTTTGATTGGATTCAGAAAATAATGGATAAAAACGGTATAAACTGGGAAGAACTTAATACTTTTTTTGAAGTTACGCAAAAATTTGATGATCGGCTGATGGCTTAATGCCACTCAAAGTTCGTAAAAAGCTGTCTGGAAACTTCTACTTGGATCAAACAATTATTGTTTTTCCCGCAATACCTAACAATTT
e caePb3.Scfld02_0       2996739 212 +  4147112 I
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I
e caeSp111.Scaffold622    380379 108 +   386604 I
e caeRem4.Crem_Contig0   1656284 210 -  4500979 I

a score=621.000000
s ce10.chrX              4750131 88 + 17718866 TGATAACGTTAAATCGTAACGTTTCACGCCCACCGACCCTTACCGAGCCTAGACACCACACCTAAGTTGTAAAACAATGGAATGTGG--T
s caeSp111.Scaffold622    380487 68 +   386604 TGATAACGCCAAATCGTAAAGTT-------AATAGAGCCTTA---AACCTAAACCCAACGTTTCA------------TGAGAAGCCGCct
i caeSp111.Scaffold622  I 108 C 0
e caePb3.Scfld02_0       2996739 212 +  4147112 I
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I
e caeRem4.Crem_Contig0   1656284 210 -  4500979 I

a score=54471.000000
s ce10.chrX              4750219 258 + 17718866 AGGTGAGAATTTGGAG--GAGAAAAACTAAGCGAACAAGAACAAAAAAATGAAACGATGGTTAGTGCACAGCTGGTGAACACACGGGAGATTGATCG-CCTTGGCAGGGCGAACATTTCAGGAAAATGAGAAATGTCTCTACTCATTGAACACGAGACTCTCGCTTCCGCTTTTCTATTTGACAAGTTCAATTTCGAAAATTTTTTGACTGTCACAAGGTCAATGAAAAGATGTGCCGGTTGAAAATTTGATGTACTTTTG-------------------------------
s caeRem4.Crem_Contig0   1656494 212 -  4500979 AGGTgaaaatcggaaa-cagaaaaaaacgagtga-----gaaaaaaaaatgaaacgatgGTTAGTGCACAGCTGGTGAACGC---GAAGATTGATCG-TTGTGGCAGGGCGAACAaagca-gaaaatgagaaatgtctTTACTCATTGAACACGAGACTCTTGCTTCCGTTTTTCT------Ctggttcaatttttcaaa-ttctcggTTGTCATAAGacc-------------------------------gaactcttt-------------------------------
i caeRem4.Crem_Contig0  I 210 C 0
s caeSp111.Scaffold622    380555 209 +   386604 aaaagaaaattagaaagtgggaaaaaatgtgta---------gaaaaaatgaaaagatgatAAGTGCACAGCTGGTGAACGC---GAAGATTGATCG-TTGTGGCAGAAGGAACAAAGCA-GCAAATGAGAAATGTCTCTACTTATTGAACACGAGACTCAGGCTTCCGTTTTTCt------caagttcattttttcaaa-ttcctgATCGTCATACGACC-------------------------------GAACTCCGG-------------------------------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2996951 238 +  4147112 AGATGAGATTAAAAAGGTGAGAAAAGATAGGtg--------caaaaaaacgaaatgatgaTTAGTGCACAGCTGGTGAACAC---GAAGATTGATCGTTTGTGGGAAGAcgaacaaagaa-gaaaatgagaaatgtctTCACTCATTGAACACGAGACTCTCGCTTccg--tttct------caa----attttttaaaa-ttcttgaTTGTCATACGACAGG-----------------------------GAACTCTGTTTCACCGAAAGTGCAAAGTGGAGGacttttg
i caePb3.Scfld02_0      I 212 I 76
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I

a score=-4143.000000
s ce10.chrX              4750477 108 + 17718866 TTTTCATTCTGAGGTCAAGTTATTAAGTGAGCAATATACATTATCCTCAATACTTTACAGACGTGCATTTTTCCAGC-GCTTAGAATGGAACCATTTCTCCTTTAAAAA
s caeRem4.Crem_Contig0   1656706  49 -  4500979 --tttttccggaagTGATG------GTCCAGAGATA--------------------ACTggcatcattttttcaaat--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    380764  71 +   386604 ---TTTACCGGAAGTGCAG------AGTGAAAAGCA--------------------ATTGGTAGCCGTTTTTTAAACGACTTGGGCTGCAA--AATTCTTTT-------
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2997189  76 +  4147112 I
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I

a score=-43647.000000
s ce10.chrX              4750585 333 + 17718866 AAACGATGTGATC-------------------CAAAAACTGAATGAGCCAC--TATTAAAATATAGTCTCTCTACATTCGAATAAAGTTTTTACAAATTATTGGAGCAGTCGAGAGCAATATATTAATTTTTTG------TGAGAAAATAACTTACAAAATTTTTAATAAAAATGCATATTATGCCAAAATTAAACTTTGAAATTTTTAATAATTttgctaactttggaaattgccggaatttttagaaatcggccaagtaacaattttgaaaaatttagcaattgtcaaaagttgtcgattgtcaaaaaCAAATTTTTATTTTATACTGGCGCTGGGTAACACTTAAGTTATACG--------GAGA---
s caeRem4.Crem_Contig0   1656755 118 -  4500979 ---------------------------------gaatattgaaaagaaCAGAAGATGAAGATATGATTG--------CTAGAT-------------------------G--------CAGACAGCatcttttttcaac--taaaaa------------------------------------------------------cgttcttc-----------------------------aa-----------------aataatttttaggcGTATA----------------------------------------------------------------AAAG--TAGTTCACACC--------AAAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    380835 157 +   386604 ----GA--------------------------CGAGAGTTCCTGGTTTC----TTTG--AATATGAAGG-TGTACAACTTAAT--------------GTACCGAAATGG--------GAGACATCGATTTTTTGCAACTGTGAAAGAGTA--------------------------------------------------CTATCT-------------------------------AAACTggta----------aagaaaaaacaggagaaaa------------------------------aagag-------------------------ggacaacg--caggttctaccc-------aaaaagg
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2997265 249 +  4147112 aaaagatttgTTTATACTTCCAAAaagctgttcaaaaatttctattttcaggtttCGGAAATTTTAGCG-TCTAGAATTAAATacgg-------aaagttttgaaaatg---atctcAAAAAAGCGATTTC---------CAAAAGAATAACC----------------------------------------AACtct-caatcttc----tttttgc------------ttGCGAAAACTATTACTGCCTCCTCAACAAAACACTATCAAAAA-----CCACTTCCGAA-------------CAAAAA-------------------------CGGTATAG--TAGGTATAACCCTCCCTCAAAAAAGG
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold17934   140161 815 +   591668 I
e cb4.chrX              10084813 733 + 21540570 I

a score=-838.000000
s ce10.chrX              4750918 144 + 17718866 AAAA---TGACTAATATG--CAGTATTGAGCCAGTATTGAT-AAGAATGAGGC---------AAGACTGTTTGTCATA--TAA----------ACAACAAAAGGGGAAACAACTGGGACGAAAAAATGATTGGTCAGCGGT-----CTACGGCGGGGAAACGGAACATAACATTGG
s cb4.chrX              10085546 135 + 21540570 AACA---TGATTAATATGGATGACACAGCACAGGTATTGATAAAAAAGGAGGCAACTGgccaaaaattgtttgggGTTGACAG----------TAAGCAAAAA----TACAAC--------AGAACTGTCTGGTCATCA-------AAACGGGTACACAT----ACACA-----GA
i cb4.chrX              I 733 C 0
s caeRem4.Crem_Contig0   1656873 145 -  4500979 AAGATGCTGACTAATATG--CGATACCGAGCGTGTGTTGAT--AAAAGGAGGCAACTCGACAAGAACTATTTGTGTTC--CAA----------Ccatgaaaaac--ttccaac--------AAAACAGAGTACTCATCAGA----CGAacaggaaaaaagaggaacacAAT-TCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    380992 152 +   386604 aaaa---tgactAATATG--TATTATCGAGCCActattgat-aaaaaagacGC-AATAGACAGAAATTGTTTGTGACAAGAAGGAATA-----TCAAAACAAACGGGGCCGTA--------AA---TGTCgagtcaacagaaaaaagagtgtgAACGAAATGGAACATGAT-TCGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2997514 137 +  4147112 AACG---TGACTAATA-----------GAGCAGGTATTGAT---AAACGACGCAAATATATGTAAAATGTTTGTAATAGTAGGAGGTaaaaacccaaaacaaacgaccccaaa--------aaaagtgacgaaTCAGCAGA------AGGGCAAAAGAA---GAACATGGT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   140161 815 +   591668 I

a score=7571.000000
s ce10.chrX              4751062 130 + 17718866 AAT--GTTACTCAACAA---------TCCAGGT--AATTTTACGAGG-GCAGACCATAAAACAGAAGGCGAT-----CCTTC----ACATTGGGGGA-ACACAGACTGTCCTGCTGCTCTTATTTACGACAG----------------AAAAATACTGTG--------CGGAGAGACA
s cb4.chrX              10085681 143 + 21540570 ATG--TTTTCTCAACCT-TCACCTGATCCGGGGGCAAATTTACGAGCGGGACATTGTAAAACAGAAGACGTTCTCCACATTCCTTGACAC---ACGC-AAACAGACTG------GGCTCTCATTTATGACTA----------------GCAGACAGGGAG------AATGACGAGGTG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1657018 135 -  4500979 ATT--GTTTCCCAAAAT-TCACTTGATCCGAGG--AAAATTACGAGC-GCACACCATAAAACAGAAGGCGTT-----CATACCTTTACAT---ACAA-ACACACAGTG----------CTCGTTTACGACGAAGAC------------GAAGGCTGTGAA------TGTGGTGAGACA
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold622    381144 138 +   386604 ATCTGTTTTCCCATGGGGTAACTCAATCCAGGT--AGATTTATGAAC-GCACATCATAAAACAGAAGGCGTA-----CATTTCTCAACAT---ACAA-ACAGACTGTG----------CTCGTTTACGACGATGAG-------------GAGACAGTGCG-----TAACGAGTAGact
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2997651 128 +  4147112 -----GTTTCCCAACATCTTCCCAGATCCAGGT--GAATTTACGAGCGGGACACTATAAAACAGAAGGTGAA-----CATTC----------------ACAGACAGTG----------CTCGTTTACGACAATGAG------------AGAAACAGAGGGGACAACAGTGTGGAGAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   140976 123 +   591668 -------------------AATGTTACCAAAGA--TTTTTTACGAGC-ACAGACCGTAAAACATTGGAGGTT-----ACTGC----ACAT---AGAACAGACTGTCTG----------CGCATTTACGATGGTAATGACTGCCACATAACAAACGGTGTA-----CAGAGGA------
i caeJap4.Scaffold17934 I 815 C 0

a score=-2917.000000
s ce10.chrX              4751192 15 + 17718866 CATCGCGCGGCTATG
s cb4.chrX              10085826  8 + 21540570 ----CCGGGACT---
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold622    381282  5 +   386604 ----------ctgtg
i caeSp111.Scaffold622  C 0 I 24
s caePb3.Scfld02_0       2997779  5 +  4147112 ----------CTGTG
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17934   141099 11 +   591668 ----GAGGGGCCAAG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1657153 19 -  4500979 I

a score=79669.000000
s ce10.chrX              4751207 112 + 17718866 GGTGCAGTACGCGCGGCAGGATAAAAAGAG---TGGCGGACCATCGATT---GGTATTGTTTGCGGATGGGTTACC---------AGCCATTCAAACTC-------AGCC--CTCTTGAGT-------AACTGCTAATCCACT
s cb4.chrX              10085834 126 + 21540570 -GTACACTGTACGCGGTGGGATCAAAGAAACCCCGGGGGACCATCGATTGGGGGTATTGTTTGCGGATGGGTTACT---------AGACATTCAAACTCTCTGGGTAGCCCACTCTTGAGT-------AACTGCTAATCCGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1657172 111 -  4500979 AGTACAACAGAAGCGGTACGATGAAAGAGG---TGCAGGACCATCGACT---GGTATTGTTTGCAGATGGGTTACC---------AGCCATTCAAACTC-------GGC---CTCTTGAGT-------AACTGCTAATCCACT
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold622    381311 110 +   386604 AGTGTACAGTGCGCGGCATGATGAAAGAA----TACAGGACCATCGATT---GGTATTGTTTGCGGATGAGTTACC---------AGCCATTCAAAATC-------GGC---CTCTTGAGT-------AACTGCTAATCCACT
i caeSp111.Scaffold622  I 24 C 0
s caePb3.Scfld02_0       2997804 111 +  4147112 AGTGTACTGTGCGCGGCATgatcaaaaag----aaacggaCCATCGATT---CGTATTGTTTGCGGATGGGTTACTG--------GGGCATTCAAACTG-------GGC---CTCTTGAGT-------AACTGCTAATCCACT
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold17934   141110 122 +   591668 AGTGGA--GAAAGCGGCGGGATAAAAGAG----GATTGGACCATTGGGT----GTATTGTTTGCGGATGGGttaccaccaccaccaccaattCAAATTT--------GC---CTCTTGAGCTCGTGAGCACTGCTAATCCACT
i caeJap4.Scaffold17934 C 0 I 558

a score=-36626.000000
s ce10.chrX              4751319 133 + 17718866 CTTG--AAAACCTATCATTTGTTG---------GGAGACCAAAAATAAAGGGAACGGGGAATT--------GCTGAGC-----------AAAAAAC-----------ATATCTATATAAATTTGAATAATTAAAAAGAAAGATTGCAATTGTTTAT-----ATCAAAATTC------------------ATAAAAAA---------------
s cb4.chrX              10085960 128 + 21540570 TTCTTCAAAACCTATCATTTCCTATTAT-----AAGGAGTTTGAGTAAATG----------AA--------ACTAC-------------AAAAGTT-----------AT-------GAAACACGAG---------------------AAAAGTTAT---GATTCCAAACCCGTGTAACTCAAA------TTAAATGACAGTTCCATCATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1657283 143 -  4500979 CTCG--AAAACCGATCATTTGATGCGGC-----GAAGCGGGAGAAAACATG-CACGGAAGTGA--------ATTGT-------------AACATTT---------TAATA------GAAAcataaat---------tttggttttcccCAAGttgtcgaaatttgaaaatcatg--aC---GA------ATAGAtgaga-----attatgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    381421 134 +   386604 CTCG--AATACCTATCATTTGCTGCTGCTGCGAGCGGAATGCGAGCGAAAA-CACGGAAAATA--------ATCGGGC-----------AAGAATGGTTGTTCACCTATAT-TCGGTAA-------------------TAGATAATaatatttgat-----ttgaaaaac-------------------ttgagaaaaa-----a-------
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2997915 174 +  4147112 CTTC--AAAACCTATCAT----TGCTTCTGCGGAAGAGGTTTG-----ACA-CAGGGAAAACATGCTATTTATCGGACCGTGCTGTGTTAGCATTCGGTGTTAGCAAATAT-TATGTAAACACTGA-----------TAAGATTCTAATAAATGAT--AGACTGGAAAATTACAAGGTTCAAATTAGTATTAAGTGAAA-----A-------
i caePb3.Scfld02_0      C 0 I 78
e caeJap4.Scaffold17934   141232 558 +   591668 I

a score=-12888.000000
s ce10.chrX              4751452 102 + 17718866 ATTTTACACGCTAGAAAAATCATGTGCC------ACTACTGTAACCTTAAAG----ATTTGTCCTTGTATTTTTTTTTAATCGACGAGATAATACCCATAAT--ATAAC-----ATAAG
s cb4.chrX              10086088  79 + 21540570 -------------AGAAAACCATGTATG------GATATTGTAGA--TTAGG----ATGAAA---ACAGAATCGCTCTGTGC--TGACACGTTTTGTGTGGTTCGCCCA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1657426  90 -  4500979 -------------aaaaaagaatgaaaaaaatatgatagAGCAGA--TCAAG----ATAGAACGCAAAACATTGTATTTATC--TGACGTGTTGCTTGTGGT--GCTTG-----TTGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    381555  94 +   386604 ---------gtagaaaagaCAATC----------TCTATAGCAAA--TGAAGGTTTATGATGCATTTAAGGTTGTTATCGGTG-TGTCATAATTTGCGTGTT--ATCCAATCCAATGG-
i caeSp111.Scaffold622  C 0 C 0
e caePb3.Scfld02_0       2998089  78 +  4147112 I
e caeJap4.Scaffold17934   141232 558 +   591668 I

a score=22769.000000
s ce10.chrX              4751554 48 + 17718866 GTTAAGGATGACGTGCGA-AAGTTAATTGCACAATTGTCGCCGATTAGA
s cb4.chrX              10086167 41 + 21540570 --AATGAACGACGTGCGA------AGTTGCACAATTCTCACCGATTAGA
i cb4.chrX              C 0 I 631
s caeRem4.Crem_Contig0   1657516 47 -  4500979 GTGAGAAACGACGTGCGA-GAATGAATTGCACAATCGTCACCGATTAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    381649 48 +   386604 GTGAGAAATGACGTGCGA-AAGTAAATTGCACAATTCTCACCGATTAAG
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2998167 49 +  4147112 GTGAGAAACGATGGGCGGTAAGGAGTTTGCACAATAGTCACCGATTAGA
i caePb3.Scfld02_0      I 78 C 0
e caeJap4.Scaffold17934   141232 558 +   591668 I

a score=5203.000000
s ce10.chrX              4751602 19 + 17718866 ATCTGCACCGTTTAATATT
s caeRem4.Crem_Contig0   1657563 19 -  4500979 ATCTCGGTCGATTATGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    381697 19 +   386604 ATCTTGATCGATTACAATT
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2998216 19 +  4147112 ATCTTGATCGATTGCAATT
i caePb3.Scfld02_0      C 0 I 48
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I

a score=67.000000
s ce10.chrX              4751621 2 + 17718866 GC
s caeRem4.Crem_Contig0   1657582 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    381716 2 +   386604 AC
i caeSp111.Scaffold622  C 0 I 47
e caePb3.Scfld02_0       2998235 48 +  4147112 I
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I

a score=-140.000000
s ce10.chrX              4751623 33 + 17718866 CATGAGAGTTGGAATGATCGATTTAGTGTGAGG
s caeRem4.Crem_Contig0   1657584 20 -  4500979 TATGTGTATTGCA-------------TGTTAGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       2998235 48 +  4147112 I
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I
e caeSp111.Scaffold622    381718 47 +   386604 I

a score=-181.000000
s ce10.chrX              4751656 11 + 17718866 --ACTAAAGTGTG
s caeRem4.Crem_Contig0   1657604 11 -  4500979 CCATGGATATG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       2998283 11 +  4147112 --atcAAGATGTG
i caePb3.Scfld02_0      I 48 I 3
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I
e caeSp111.Scaffold622    381718 47 +   386604 I

a score=-25960.000000
s ce10.chrX              4751667 220 + 17718866 AAA---AAGCAATCTGAAACATTGCAAAAGTTACTGATTTCAGAAAATTGAGAAGTATTCGAGAAAGAAAATCGATTTATAAGCGTTTCAAGAAATTTGAAGAA-GTCGAGTTTTCAATTAAATAACAAAACTATTAATGTACCTATTCTATAATAAATCTGATGATGG--TTTACTGCAAAAACCCGTTATCACGGACCACAATAGTTCTAAGTTGATAAGGAAA----------------
s caeRem4.Crem_Contig0   1657615 128 -  4500979 ---------------TATGC------------------------ATCCTAGAATat-----aatgagaaa-------tttttttctc----atgatTTGAAGCAGAATTATGTTTTG--------------ATAGTTA-----------TAATGGTTGTCGAATGGGGGCGTGTCCCTAAAAA---------CATTTACTCA---------ATGATGAGACGGAAA----------------
i caeRem4.Crem_Contig0  C 0 I 119
s caeSp111.Scaffold622    381765 188 +   386604 aaa---aaacattcttATGTAGTGG--TTTTCAGGAAATACAACAAACTCAGAGGG-----AGCAACAAA-------TA-CACTGTTGGATATAATTTTAATCA-ATGTGTGTTTCAATTTTACATTGAAAGTATATA-----------AAAGGGCGGGTAGACTGAGA-----ATCTCAAAA---------CACGGACCAC---------CTGATGATAAGGGCAA-AGTTAGTACGAGAG
i caeSp111.Scaffold622  I 47 C 0
s caePb3.Scfld02_0       2998297 170 +  4147112 aaacataaaaaattatattcaagGC--TAGTCTGGTATT-----AAACCCCGGTAT-----AGAAAGTAA-------TATTGATAACCGAAATAACTTGAATTC-ATTGACGCGTCA-----AAACAAAACCTATTGA-----------AACAAACAATCGGAtaatga-----aactcaaaa-------------------------------atgttaggTTTAATAGCCTTGAAGAGTG
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I

a score=-11159.000000
s ce10.chrX              4751887 206 + 17718866 TTAGACAAACTCACGAAACACAACAAATCTGTGAGAAATTGTAGGGTTTTATCCATATTTTTGGTAATTTTAACTTTATATGCGAAATTATTAAAACCCTAGAAATCTGTTAGACTTTGT-AATCTTCTCATTAGAATTTCAATTTCAGTTAACCGCCAATTTGAAATGGGTTGCAACAATTAA-AAGTGTTAAAAACAAAGAGTAAA
s caeSp111.Scaffold622    381953  96 +   386604 ------------ACCAGCTGTCA------------------------------------TTCAGTAGATTTGAACACAAGTGTCCAC------------------CAAACTTCAATAAATGTATCTGCTTTTCAAAATCCT--------------------------------------ACTAAGGAGT--------TAAATGAAAGA
i caeSp111.Scaffold622  C 0 C 0
s caePb3.Scfld02_0       2998467 131 +  4147112 ----------TCACAAAGTACGA------------------------------------GTAAACGGATTTGACC----GTGCcaacataaaaaa-----gaaagccAGTTCGAATTAA--CAGCTGCTGGGCAAAATTTT-----TAGCAAACCGATCCTCTT-TGCGGATTG-----ACTAA-CATT--------TGAACAATCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   141232 558 +   591668 I
e cb4.chrX              10086208 631 + 21540570 I
e caeRem4.Crem_Contig0   1657743 119 -  4500979 I

a score=793.000000
s ce10.chrX              4752093 3 + 17718866 CTT
s caeSp111.Scaffold622    382049 3 +   386604 TTT
i caeSp111.Scaffold622  C 0 I 1
s caePb3.Scfld02_0       2998598 3 +  4147112 TCT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   141790 3 +   591668 CTT
i caeJap4.Scaffold17934 I 558 C 0
e cb4.chrX              10086208 631 + 21540570 I
e caeRem4.Crem_Contig0   1657743 119 -  4500979 I

a score=-17908.000000
s ce10.chrX              4752096 83 + 17718866 TAAAATTCTAATTTAGTATTC---------AATTACAATTTCGAAGAACACAAAAGGAATTTGAAATTAATAGAGGATTAAAAATGAATAGG
s caeRem4.Crem_Contig0   1657862 76 -  4500979 TGCAATTCTACTTTTGAACT----------GATTCTCACATAATGAGATTTGAAAAGAATCTAAAATGTGTACAGGGATTCAATTG------
i caeRem4.Crem_Contig0  I 119 C 0
s caeSp111.Scaffold622    382053 45 +   386604 GAAAACTATagtatt-----------------------------------tggaaaaa--ttaa--------gCCAAATTCTCTAGGAAG--
i caeSp111.Scaffold622  I 1 C 0
s caePb3.Scfld02_0       2998602 56 +  4147112 AAAAACGTTGTTCTTCAA--------------------------------TGAAAATC--TCGAGAGGAACTGACAGATTTGAACGACAG--
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   141793 75 +   591668 TAAAACCTTATTAATGCACTTTtacaacaaaacaacaattttaaa-----caaaaata--tgaaTAACTGTCAGCGAATATG----------
i caeJap4.Scaffold17934 C 0 I 17
e cb4.chrX              10086208 631 + 21540570 I

a score=75746.000000
s ce10.chrX              4752179 126 + 17718866 TCTTATGGATGAGATTGATGGACCCGATAAAACAGTC--TC--TTAGAAGCCGCCTC---CACAGATTGACCC--CTACAGGAGCACAGATGTTGACCAACGTTTGGGGACTTAATCTCTCAT-TAAACGTAGGTA
s cb4.chrX              10086839 130 + 21540570 TCCCATGAGGAAGATTGATGGTCCAGATAGTCCACTCCTTC--TTAGAAGCCGACACACAGTCGGATTGACCCCACCGCAGTAGCACAGATGTTTTCCATCGTTTGAGG-GAGATTATCGTCT-CACC--AAGGTA
i cb4.chrX              I 631 C 0
s caeRem4.Crem_Contig0   1657938 126 -  4500979 TCCCACAATTATGATTGATGGACTAGATAAAATAGTC--TC--TTAGAAGCCGCCAC---TGCGGATTGACCCC-TCGCAAGAGCCCAGATGTTGTCCAACGTTTGAGG-TATAATCCTTTCT-CGATGGGAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold622    382098 127 +   386604 TCTCACAGAGAAGATTGATGGACCAGATAAAACGGTC--TC--ACAGAAGCCGACAC---ACCAGATTGACCCG-CCACAAGAGCACAGATGTTAGCCAACGTTTGAGA-TATAATCCTTTTCTCTATTGGAGGTA
i caeSp111.Scaffold622  C 0 N 0
s caePb3.Scfld02_0       2998658 123 +  4147112 TCTCACAGAGAAGATTGATGGACCAGATAAAACCGTC--TTCAATGAGAACCGCCAC---CACAGATTGACCCC-CCGCAAGAGCACAGATGTTGTTCAACGCT------CATAATCTCCTTC-CAATTGGAGGTA
i caePb3.Scfld02_0      C 0 I 20860
s caeJap4.Scaffold17934   141885 126 +   591668 TCTCACGACAGAGATTGATGGACCAGATAAAACAGTC--CC--TTAGAAGCCGCCAT---CGCAGATTAACCTC-CCAGCAGAGCACAGATGTTGACCAACGTCCAGAG-CATAATCTCTTGG-AGAAAGGTGATA
i caeJap4.Scaffold17934 I 17 C 0

a score=167.000000
s ce10.chrX              4752305 6 + 17718866 TTTTTT
s cb4.chrX              10086969 6 + 21540570 TTGTCT
i cb4.chrX              C 0 I 3386
s caeRem4.Crem_Contig0   1658064 6 -  4500979 Atgcct
i caeRem4.Crem_Contig0  C 0 I 9
s caeJap4.Scaffold17934   142011 6 +   591668 GTTCAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2998781 20860 +  4147112 I

a score=123.000000
s ce10.chrX              4752311 2 + 17718866 TG
s caeRem4.Crem_Contig0   1658079 2 -  4500979 tg
i caeRem4.Crem_Contig0  I 9 I 7698
s caeJap4.Scaffold17934   142017 2 +   591668 TC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e cb4.chrX              10086975 3386 + 21540570 I

a score=371.000000
s ce10.chrX              4752313 12 + 17718866 CATGAGAACCTG
s caeJap4.Scaffold17934   142019 12 +   591668 CTAGAGAGCGTG
i caeJap4.Scaffold17934 C 0 I 12922
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e cb4.chrX              10086975 3386 + 21540570 I
e caeRem4.Crem_Contig0   1658081 7698 -  4500979 I

a score=0.000000
s ce10.chrX              4752325 2334 + 17718866  
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10086975 3386 + 21540570 I
e caeRem4.Crem_Contig0   1658081 7698 -  4500979 I

a score=3092.000000
s ce10.chrX              4754659 127 + 17718866 CTCTCCACTCT------CATCATCAGCCTCCTCTCCCGAATCAT---AGTCTTCCAATACGATGTCATCAAGGTCGGCA---------------TCCTCACCAAT---------GCGATCAAGGCTCCAGAGCGATGACACAAAATCTTCGATTGAACCT
s cb4.chrX              10090361 151 + 21540570 ctctccatcctgtgattcaacgtctccctcGGCTCCAGAATCACCGAGGTCCTC---------GTCGTTAAGCTCGGCAAGACGAGCCCAGTAATCCTCATTAATTTCGTCGTTGCGATCGAGAATCCATAAGTCGGAGACAAAATCCTCAATTGAACCT
i cb4.chrX              I 3386 I 5071
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e caeRem4.Crem_Contig0   1658081 7698 -  4500979 I

a score=0.000000
s ce10.chrX              4754786 2033 + 17718866  
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeRem4.Crem_Contig0   1658081 7698 -  4500979 I

a score=4663.000000
s ce10.chrX              4756819 206 + 17718866 CCAACACATAAGGTCAGCAAACAAAAACCCTCGCCACTACGCCATGTCCCTTTCG---------TAACTCCGCCCATGTCGCA-TATAAAAGACGGTTCAAACTGAA---------CACTAGCACACTAGTTGTCTACAAATTA----------CCAGCTATTTTCCAAGTAGAGAAAAGTTTCTAATTACCCATCATGCACAAATGTGGTGACTAGAGCCTATTCTCTTCTTGG
s caeRem4.Crem_Contig0   1665779 228 -  4500979 CCCATGTACAAAGTAGGCAAACAAA--CTTTCGCCATGACGCCAC-TCCTTTCTGAGGTCTCCCTAGCTCCGCCCCT--CGCACTATAAAAGGGGG--CGAGCTGATGGATTTTATCATTCGTCTTTTATTCTTCTCCACTATAATATTCAAACCCAATCTTCTTCCGAGCAGAGAATCGCCCCTAGTGACCCACCACAGTAGTGTGAGGTGACTAGAGCCAATTCTCTTCTTGG
i caeRem4.Crem_Contig0  I 7698 I 1350
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I

a score=0.000000
s ce10.chrX              4757025 853 + 17718866  
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeRem4.Crem_Contig0   1666007 1350 -  4500979 I

a score=60.000000
s ce10.chrX              4757878 2 + 17718866 AG
s caeSp111.Scaffold409      1683 2 -   201088 AA
i caeSp111.Scaffold409  N 0 C 0
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeRem4.Crem_Contig0   1666007 1350 -  4500979 I

a score=10726.000000
s ce10.chrX              4757880 83 + 17718866 TCAGGAGAGAAATTCAAATTTCTGTCGGCACGACAAAGGTCGCGGTTCCCATGAATCATTAGAACACGAATGAC-CTCAAACTC
s caeRem4.Crem_Contig0   1667357 83 -  4500979 tccaaaaagaaattcaaa-aagtgtcgGCTCATCAAAGGTGACGGTTCCCATGATTCATTACAGGGTAAATGATATTCAAACTC
i caeRem4.Crem_Contig0  I 1350 I 434
s caeSp111.Scaffold409      1685 83 -   201088 TCGAAACAAAAGTTTGAATTGGTGTCGGCTCGTCAAAGGT-ACGGTTCCCATGAATCATTAGTGCGCAAACGATGTTGGAACTC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I

a score=2201.000000
s ce10.chrX              4757963 73 + 17718866 TTCTATCTGTG---CAATGAAATAGTTTTAACATGATGTCATGATAAAAAGTACTTTTTTGAAAGCGGAAAGTTGG
s caeSp111.Scaffold409      1768 75 -   201088 CTCTATCTGTACTTCAAAGaaac-gttttcaaatgatgTCATGACCATGAGTACAAAATGTAAAGGTGAAAGCCGG
i caeSp111.Scaffold409  C 0 I 331
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeRem4.Crem_Contig0   1667440 434 -  4500979 I

a score=0.000000
s ce10.chrX              4758036 688 + 17718866  
e caePb3.Scfld02_0       2998781 20860 +  4147112 I
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeSp111.Scaffold409      1843 331 -   201088 I
e caeRem4.Crem_Contig0   1667440 434 -  4500979 I

a score=962.000000
s ce10.chrX              4758724 59 + 17718866 AAAATGGTCTTTTA-CACA---TCAAAAAGTTTCTATCATTTTTGTATTGTATGTATTCATAA
s caePb3.Scfld02_0       3019641 58 +  4147112 AAGATGGTGTCTcatcacagtttcagaaatgttttata--ttttctacTGCAC---TTCACAA
i caePb3.Scfld02_0      I 20860 C 0
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeSp111.Scaffold409      1843 331 -   201088 I
e caeRem4.Crem_Contig0   1667440 434 -  4500979 I

a score=174.000000
s ce10.chrX              4758783 3 + 17718866 TGT
s caeRem4.Crem_Contig0   1667874 3 -  4500979 tga
i caeRem4.Crem_Contig0  I 434 C 0
s caePb3.Scfld02_0       3019699 3 +  4147112 CGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e cb4.chrX              10090512 5071 + 21540570 I
e caeSp111.Scaffold409      1843 331 -   201088 I

a score=-364.000000
s ce10.chrX              4758786 4 + 17718866 --AAAT
s cb4.chrX              10095583 4 + 21540570 --aagt
i cb4.chrX              I 5071 C 0
s caeRem4.Crem_Contig0   1667877 4 -  4500979 --atat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3019702 6 +  4147112 AATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   142031 12922 +   591668 I
e caeSp111.Scaffold409      1843 331 -   201088 I

a score=-1011.000000
s ce10.chrX              4758790 8 + 17718866 ---TTATTACT
s cb4.chrX              10095587 7 + 21540570 ---ttatttc-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1667881 8 -  4500979 ---ttATTCCG
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0       3019708 6 +  4147112 ---CTGTTT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   154953 8 +   591668 TTATTATT---
i caeJap4.Scaffold17934 I 12922 C 0
e caeSp111.Scaffold409      1843 331 -   201088 I

a score=415564.000000
s ce10.chrX              4758798 1175 + 17718866  
s cb4.chrX              10095595 1184 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1667897 1125 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold409      2174 1185 -   201088  
i caeSp111.Scaffold409  I 331 I 58
s caePb3.Scfld02_0       3019714 1207 +  4147112  
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   154961 1205 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-12344.000000
s ce10.chrX              4759973 31 + 17718866 ATA---------------GATGTCTC--TATATTAAGAACTACCTTTA
s cb4.chrX              10096779 44 + 21540570 ATACCTCTAAATGGACGTAATGGTcc----tgttttgaaaaacaaaaa
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   1669022 18 -  4500979 ATA------------------------------TTACACACACGAGGA
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0       3020930 26 +  4147112 ------------------AGAGGTGT----TTTTCACAATGACTTGCA
i caePb3.Scfld02_0      I 9 I 5
s caeJap4.Scaffold17934   156166 22 +   591668 ----------------ATCATTGTCTACTATGCTTTCA----------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409      3359 58 -   201088 I

a score=400210.000000
s ce10.chrX              4760004 2086 + 17718866  
s cb4.chrX              10096833 1724 + 21540570  
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   1669052 1881 -  4500979  
i caeRem4.Crem_Contig0  I 12 I 46
s caeSp111.Scaffold409      3417 1903 -   201088  
i caeSp111.Scaffold409  I 58 I 16
s caePb3.Scfld02_0       3020961 1959 +  4147112  
i caePb3.Scfld02_0      I 5 I 10
s caeJap4.Scaffold17934   156188 1874 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-1849.000000
s ce10.chrX              4762090 10 + 17718866 TTCCAACGAG
s cb4.chrX              10098557  2 + 21540570 TT--------
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold409      5336 10 -   201088 ttgcgaaaag
i caeSp111.Scaffold409  I 16 I 29
s caePb3.Scfld02_0       3022930 10 +  4147112 ttcaaataag
i caePb3.Scfld02_0      I 10 I 4
s caeJap4.Scaffold17934   158062  8 +   591668 GTCCAATA--
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1670933 46 -  4500979 I

a score=0.000000
s ce10.chrX              4762100 2 + 17718866 AA
e caePb3.Scfld02_0       3022940 4 +  4147112 I
e caeJap4.Scaffold17934   158070 0 +   591668 C
e cb4.chrX              10098559 6 + 21540570 I
e caeSp111.Scaffold409      5346 29 -   201088 I
e caeRem4.Crem_Contig0   1670933 46 -  4500979 I

a score=-131.000000
s ce10.chrX              4762102 15 + 17718866 TGCCAAAAAGCTAAT
s cb4.chrX              10098565 15 + 21540570 ATCTGCACAATTAAC
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1670979 15 -  4500979 ctattcAGAATTCAT
i caeRem4.Crem_Contig0  I 46 C 0
s caePb3.Scfld02_0       3022944 15 +  4147112 TGTTTTGCAATTAAC
i caePb3.Scfld02_0      I 4 I 10
s caeJap4.Scaffold17934   158070 11 +   591668 ----AACGGACTAAT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409      5346 29 -   201088 I

a score=-28691.000000
s ce10.chrX              4762117 205 + 17718866 ------CAGTTATGCT-------------------------TTAAGCAAA-------ACATTATTAAT------TTAAATATGAAATTCGAGA-----TGTTAGTGG--ATCGTT---------GTTGC----TATGCGAACG---CAC--------------GGGTCAAG----CAGCAGCTTATCCGCG-GTTAGTGTCGAATTCGGA---GTGCAA--------AAGGTAATAATGAGGAATGATGGAAAC-------------------AGGAGAGATAT-CTAATATAG-GCTCGA-----------TGAGCAAAACACTCAGGATCAT-------------
s cb4.chrX              10098580 192 + 21540570 ------ATAAAATGC------------------------------GAGCACTAAGTGAAAC------------------GCTGAAATCTGAGA-----CAATTGTGG--ATCGGT---------GTTTC--CTTATATTCATG--TCTCTCTGGAGAGAAGAGAGGTCAAG----CAGCGACTTATCG--------------AATTCAGGAACGTGCGC-----GTCAAGGTAAT----CGGAATAATGAGCTGCTCGTT-------------TGGGGTGCCCT-CCCACATTT-GTTCAA-----------TGAGCAA----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1670994 215 -  4500979 ------AAATTATGCT-------------------------TTTAGTGCACAAATGAAGATTA----------------GATGAAATTTGACGCGACTCGACTCTAG--ATCGGT---------GTTGC------TACGCGTG-AGCTC--------------GGGTCAAG----CAGGGGCTTATCGGTG-GCCAGTGTCAAATTTAGA---GTGCGCCGTTTGGCAAGGTAAT----CGGAATAATGAGGTGATGCCTACGAAATGGAAACAAGGATGAAGG-GGGATACAT-GCTCAA-----------TGAGCAA----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      5375 190 -   201088 ------AATTATCGCT-------------------------TATGAAGAAAGTGCTGAGATTAATAAT-----------GTTGAAATTTGAAG-----CCTGAAGAG--ATCGCT---------GCT----CTAATGCAAATG---TGC--------------GGGTCAAG----CAGCAGCTTATTGGCG-GTTAGGGTCGAATGTATA---GTGTGG--TTCGCCAAGGTAAT----CAGAATAATGAGGTG-------------------GATAGAG-----GCGAAATAT-AAAGCA-----------AAATCAT----------------------------
i caeSp111.Scaffold409  I 29 C 0
s caePb3.Scfld02_0       3022969 171 +  4147112 ------GGTTCTCGGT-------------------------ATTCATAA--------AGATTAATTTg-----------tatgaaatttgaga-----tttagGAAT--ATTGCT-----------------TTCTGCGCGTGCCCTTC--------------GGGTCAAGCAGCCAGCCGCTTATCG------------------------------------ACCAAGGTAAT----CGGAATAATGAGGTT-------------------GAAGGCGCATGAGCAACACTT-GATGAACAACGTTCTTCAGATTAT----------------------------
i caePb3.Scfld02_0      I 10 I 67
s caeJap4.Scaffold17934   158081 262 +   591668 CCTCGCGTTTTGTGTTCTTTCTTCTACTCTTATCCTTTCCATTTAAGTAAAGCTTTTAGATCGATAATGATCAATTTAAAACGAAATTCGAGA-----CGTTGGTGGTAATCATTTGGGAGAGGGCTCCGTAGCAAGCGTACG---CCC--------------GGGTCAAG----AAGCGGCTTATCGTTTCGGCAGTGTCAAATTCGCGTG-GTTCGC------TCAAGGTAAT----CGGAATAATGAGGTGGT-----------------GCTGAAG-----ACGACGTATGGTTCAA-----------TGAGCAA---------------CACTTGGGTCCCG
i caeJap4.Scaffold17934 C 0 C 0

a score=-7794.000000
s ce10.chrX              4762322 26 + 17718866 ---TGTTCACTTGAAATGTGTTCGAATAC
s cb4.chrX              10098772 19 + 21540570 -------CACTTGAGGAA---ACGAGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1671209 17 -  4500979 -------CACTTGACAAT---ACAAGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      5565 16 -   201088 --------ATTCTAAATG---AGCAAC--
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   158343 20 +   591668 TGTTCTCCATTCTCCAAT---AC------
i caeJap4.Scaffold17934 C 0 I 88
e caePb3.Scfld02_0       3023140 67 +  4147112 I

a score=-11936.000000
s ce10.chrX              4762348 82 + 17718866 CGTAACTCCTTGAATAGTACTGTACCACACT--------ATTTGAAACGTTATATCTGTGTTCAGTATCAAAGATAAGAAACTACAAACC
s cb4.chrX              10098791 65 + 21540570 CATGAGTTGTGGAGTCAAATAGCAAGAAAAGCTCTTTTCTATCGGAATATTGT----------------AGGTTTGAGTAA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1671226 24 -  4500979 ---------------------------------------AATTGGAATTCAGA----------------GAAGTCAAG--A---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      5581  7 -   201088 ---------------------------------------ACTTGGA--------------------------------------------
i caeSp111.Scaffold409  C 0 I 6
e caePb3.Scfld02_0       3023140 67 +  4147112 I
e caeJap4.Scaffold17934   158363 88 +   591668 I

a score=-2599.000000
s ce10.chrX              4762430 6 + 17718866 ---GCTAAA
s cb4.chrX              10098856 9 + 21540570 TCTAAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1671250 9 -  4500979 GTCAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      5594 6 -   201088 ---AATTCT
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3023207 6 +  4147112 ---GCTCAT
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold17934   158363 88 +   591668 I

a score=-120569.000000
s ce10.chrX              4762436 370 + 17718866 AAAAATT-GAC------AAGTACTT-TGTTCGTGTTAAGCTGGTAAAGATGGAAACTGGGTTGAAATCCTAATAGGGAAAATACGGTAAATGGTTTGATAT-----TTTGATGTACAGGAAGTTGAAAAGAGTACTGCCAATATTGTGATGA---------------CATCTTTTAAACTACTTTTTTCCATAC--TTTCCAAAAAAATCAT----TTTTGGCTGAAAAAAGAACACTCGTATTACTGTTAATTTTCAGAATGG--GGGTTTAATTTACAAATGAAAATTTTA-------GACGAGATTTCTGATACCT------TA---------------GAGAACCCATGCA-AAACTGAGGGAAAAGAGA------------TGAATC---AAGAGTC----------GATGGAAGTGAATCGGAAACTATCACATGAAGTCTTATGAAGCTT--GAA------
s cb4.chrX              10098865 280 + 21540570 CACTGGT-AATCTAGAAGGGATGag-cttttttgtt-------tcacaATGCACACTCTGAT----TTCTGATAGGTGAGGAATGC-------------------------------ggaaatc-----agaagacgtcagtaTCTTGGAGT---------------CACATTTGAAGCCA----ATTGGAAAC--AATCCTGTCACATGGA----TTACAGGTGAAATGACGA-------------------TTCCAAAATGCACTCGTATATTTTAAAAGTGTACACTATT---------TGAGAATTTGACTAAAT------TGTCTTCc-----------------------aagtggaaaaaaaagaaggcggAGTCTTTATGATTT---ATGACTC-----------------------CGGAAA-----------------ATG--------AAA------
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1671259 261 -  4500979 CAAGAAT-AAT------AGGTtg-----tttttg-----------------------ccgtt----ttctgAC--------------------------------------------------------------------TATCATCGTGT---------------TTTGGTT-----------ACTGTAAGCGGAACTCATTAAAATGGAAACGTCTCAGCTGATGTG------------------------------------tttctcatttaaaaaatttaaattgtt--------------ATTCGAACAGATTTCTGATATCTTATCATGTATCTATGTTAACttgga-aaatagaagaatcagaagacgtcatccGTCTGTATC---AAAAGTCACATCAGTTTAATGGAAGTGAATCGGAAACAATC------AGTCATATG--------GAA------
i caeRem4.Crem_Contig0  C 0 I 88
s caeSp111.Scaffold409      5600 252 -   201088 CAagattgaat------gaa--------------------------------------------------gaaagcCAAGTCACgg-------------------------------------------attcaatttctttcccTTCATGT------AATAAATCACACTTTTT----------ATTAGGATA--AATTCATAAA-----AGACTCTTAACTCAAAGTGAT----------------------------------TCGCACA--------------ACGGTT----------------TCTGATATCT------TAACTTAAAAACTATGCAAAAACATAAGGAGAAAGCGGAAAATCTGAAGACGTCATTCGTCTGTTTC---GAAAGTCACAT-AGTTTGGTGGTAGTCAATCGGAAACAATC------AGTCACATG--------GAA------
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3023213 182 +  4147112 TAAAATT-AAT------GAA--------TTTATG-----------------------GTTTG----TTCTGATACTGAAGGTGTGA-----------------------------------------------AATGTTATTCCAATCGGTT------------TCTGATATTTT----------ATCATAAGA--ACTGCAACAA----------CATAGGAAGAAGGAA--------------------------------------------------------------------------------GGATACGT------CA-----------------------------------------------------TTTGTCTGTTTC--AGAGTGTCACAT-ACTTTACTGGAAGTGAATCGGAAA-ATTC------AGTCACATG--------GAA------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   158451 310 +   591668 -AAAAGT-TTC------GAATCATTCCGTTTGCA----------CAAAATTGACCTATTAGA----TTCTGGGAATAGAGTAAAGT-------TTGGAAATGCTTGTTTCATTTTGTGTTTGTTGCTGTTACCTGCTTCTTTGTACATATGTATGCAAAaagtatttgttttttt----------tttctaaaa--a----agaaa----------agtaagacACGGAAAT----------------------------------TTATGAAATCTGATAACGAAAGTCATTAGGCatcagaagaaaaaagaagacgt------cA-----------------------------------------------------GGTGTCTGTAACCAAAAAAGTCACAT-ATTTTGGTGGAAGTCAATCGGAAACAATC------AGTCACATG---CTTCAGAAGTTATG
i caeJap4.Scaffold17934 I 88 C 0

a score=-18621.000000
s ce10.chrX              4762806  79 + 17718866 AAAAAGTTCGAAGCAAACAAG-----TAAT-----------------------------CACGAAATGTGTTTTTTTTCCTGATTAACCCTT--GAGAGTC--CAATGACG-AACATT
s cb4.chrX              10099156  44 + 21540570 aacaaatg------aaaaaat----------------------------------------------------------------aacattt--gtGAATT--GTAAAAGCTGAGAAA
i cb4.chrX              I 11 I 1
s caeSp111.Scaffold409      5855  74 -   201088 GATGAGTTTGATCCAAATAAT------------------------------------------AAGCGTATGCATTcacttgaaaaacatttcggAAAAGT--TCATAAGATAAGATT
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3023398  89 +  4147112 GACAAGTATGATTAAAGCGgtttatgaatt-----------------------------tcaaaagttttcgaggtatcctcaaaaacaattcaatgaAGTAGAAATGATATAAGAAC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   158761 115 +   591668 GAAAAGTACAAGTAAAATATATAGAGCATTGAGataacaaaactaatattGAACTTGAACTTACaacttgttgtttttttccaaatttctttCAAAAAGAG--CTATGATTGAAAGT-
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1671520  88 -  4500979 I

a score=-206.000000
s ce10.chrX              4762885 15 + 17718866 TGAAA-------------AAAAAATCAA
s caeRem4.Crem_Contig0   1671608  9 -  4500979 -------------------GAGAAGCAG
i caeRem4.Crem_Contig0  I 88 C 0
s caeSp111.Scaffold409      5929 28 -   201088 CAAGATGCTATAAGTggaaaagaatcaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3023487 17 +  4147112 TTGGATG-----------AAAGAATCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   158876 13 +   591668 ---------------TGAAACAAATCAA
i caeJap4.Scaffold17934 C 0 I 49
e cb4.chrX              10099200  1 + 21540570 I

a score=-7526.000000
s ce10.chrX              4762900 52 + 17718866 GTTTTAGTT-----------------TTGATCAAACGCAA-------------------AATAAAACGAGTTGAGGTGAGCACAGCC--G
s cb4.chrX              10099201 37 + 21540570 -------------------CGACAATAAAGCCAACCACAAT-------------TACTGAATA-AACGA--------------------G
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1671617 75 -  4500979 GATCAAATTAAATTCGCTTTAATAACAAGTGTAACGGCAATGAGGCGTCAAT-CTCTCGAATAGAACCA------------ACCGCC--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      5957 68 -   201088 attcAAGAT----------TGCTAATAGGAATAACTGCAATAAGGCAATGAGCCTCTTGAATAGAACCA------------ACCGCCGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3023504 51 +  4147112 ATTTGCAAT--------------------ATTAAC----ATGAGGCGTTGGG-CTCTTGAATAGAACCA------------ACCGCC--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   158889 49 +   591668 I

a score=44606.000000
s ce10.chrX              4762952 72 + 17718866 TATTGAATGAACG-TCCACAGCTCCACCCACTT--CCATGATATACGGTAATTGGGA-CCCAA-----GACGCTTAC--CCGC
s cb4.chrX              10099238 66 + 21540570 AGATGGGTCGTCG-GG--CGACTCCACCCACTT--CCTTGATATACGGTAATTCGAA-TCCTC---------TTTAC--CCAC
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   1671692 74 -  4500979 TAATGAATGAACA-GACTCAGCTCCACCCACTT--CCATGATATACGGTAATTGGAA-CCCTC-----GACGTTTACAACTAC
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409      6025 73 -   201088 TAATGAATGAACG-GCCTCAGCTCCACCCACTTTTCCATGATATACGGTAATTGGAATCCCTC-----AACGTTTAC--CA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3023555 79 +  4147112 TAATGAATGAACGCGTCcaagctccacccactttccCATGATATACGGTAATTGGAACCCCTCTCGAAGACGTTTAC--CA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   158938 69 +   591668 TGATGAATGAACG-TCCTCAGCTCCACCCACTT--CCACGACATACGGTAATTGGAA-CC--------AACGCTTAC--TCTA
i caeJap4.Scaffold17934 I 49 C 0

a score=-5895.000000
s ce10.chrX              4763024 23 + 17718866 CCGCTCTCATGTGTTTGTGTGCG
s caeRem4.Crem_Contig0   1671768 19 -  4500979 CCGCCCCAAGA----CGCGTCTG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409      6098 12 -   201088 CTGC-----------CGCGTGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3023634 10 +  4147112 CCG-------------GCAGCCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   159007  9 +   591668 -----CCAAGA----CGA-----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10099304 37 + 21540570 I

a score=176715.000000
s ce10.chrX              4763047 683 + 17718866  
s cb4.chrX              10099341 683 + 21540570  
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   1671787 663 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      6110 668 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3023644 657 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   159016 724 +   591668  
i caeJap4.Scaffold17934 C 0 I 536

a score=-22167.000000
s ce10.chrX              4763730 170 + 17718866 CACAAGTCTAAAGGAAG-CGTGGAATTTATGA-GTTTA----AAAGTGAATCAAAGAGAAAGAACCGATGA-TGCGA---TTCA---AAAATCTGCAATAAT---------------TTCAAATAGTGTGAAGGAGTCTTAGCTAGTGAATTATCGAATAAAAATACTTCTAATGTACAATCTT-----------AAAAC-CTTGAAAAT---------------------------
s cb4.chrX              10100024 165 + 21540570 --------TGAGGCCAGCGGTGGAAtttatga-gtttttgaatgaatgCAACTCAAAGAGGTTTCcgataa-tttgaattttta---ag--tttgaaaaGGTTCCCAAGTtcctgaattcaaaaagtggaagaa--------------------TTAAAAAGAATGT-----AGAagcaatttt-------------aat-tttcaaaacttctgaaat------------------
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1672450 135 -  4500979 --------TGCGACCAG-ATCAAAATTTATGA-GTGTT----TTAATGCAAGTCAAAAA---TACCGACAT-TTTGAATTCTCT---AGATTCTAAGAAATAACCTCAGC-------TTTggtaattggaaaaa----------------------agagaaaatg-------------atttg-------------aataatGTGAAACT--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      6778 156 -   201088 --------TGAGGCCAA-GTa-caatttatta-gtttt----tgaatggaacTCAAAAGAAATACcgatta-tttgaatttcatcacaaattttttga-------------------ttcaaagtGTGAGAAAa------------------gtttggagaaaatg-------------attttccatttcacagaaaat-ataaataact--------agtagtg------gaaga
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3024301 131 +  4147112 --------TGAGGCCAA-GGAGAAATTTATGAGGCTTT----TGAATGTGTGT-----GGAGTAccgataattttgaatttcat---acgTTTCGTCA-------------------TACACTCT----------------------------------CAACATA-------------AACTT----------GAAAGT-GTGGGAAATT--------ACtgctgatttttggaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-3497.000000
s ce10.chrX              4763900 39 + 17718866 ------TAGGAAACGTTTTGGATCTTTGCGTAGTTCTACTTAAAA-
s caeRem4.Crem_Contig0   1672585 35 -  4500979 TGGAGGCAATAAGTGTTTTGC-----------GTGATGctgaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      6934 15 -   201088 ------gaaaaaacgattgaa-------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3024432 15 +  4147112 ------taaaaaacactcagg-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I
e cb4.chrX              10100189 35 + 21540570 I

a score=-9416.000000
s ce10.chrX              4763939 29 + 17718866 TAACCCAAAAAGTCCAAATTTC----AAAACG-A
s cb4.chrX              10100224 11 + 21540570 -----------------TAATc----gaaatg--
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1672620 29 -  4500979 cgatgaaa---aaactttgatcgtgagaaaag--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      6949 26 -   201088 tAAATCAAGTTGAGCTATTGtc----ataa----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3024447 26 +  4147112 gaagaaaa---gagcaaaattc----agaatga-
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-3663.000000
s ce10.chrX              4763968 33 + 17718866 GCCTTTTCGAAAAACTGCTCACGTTTTTTTGTA-----
s cb4.chrX              10100235 25 + 21540570 gaattttcaaaaaaaaattaga--------tta-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672649 32 -  4500979 gcattcg-aaaaaataactgaatttttcttttt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      6975 17 -   201088 ---------------------atcttttttttttcaaa
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3024473 28 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-1847.000000
s ce10.chrX              4764001 10 + 17718866 TTGAATGCCA
s cb4.chrX              10100260  7 + 21540570 -taaacca--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672681  7 -  4500979 -tcaatca--
i caeRem4.Crem_Contig0  C 0 I 130
s caeSp111.Scaffold409      6992  9 -   201088 -tttataatA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3024501 10 +  4147112 TTGAATACTA
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-19514.000000
s ce10.chrX              4764011 115 + 17718866 ACAGCTAACCAAAATAGGGAATTTAGTCACTTTTGGTTACCTAAAACACAGAAAA---AAAGCAAAGTTA-------ATTATAAATT------AAATAGAATCTGAAA-------AAAACCGCTGAAACACTAGGAAA
s cb4.chrX              10100267  97 + 21540570 ------------------aaacttca-----------aaattgctAACAAAATTT-CGTTAATTGTTTTCTTCTAActccgaaaatttttcgaaaactctggCCGAAACGCGCCGGGGCCTAGTCAA-----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409      7001  37 -   201088 ----------------------------------------CTGggaatgaaacaa---aaaacaaagttc---------------------------------------------gAGATTGAT------------A-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3024511 106 +  4147112 -CAATCAATC---ATTTGAAGTTTAG-----------TGCctgggaaaaaagttagtgAAAATAAATCTc---------cacaaactttttggaacttttATTTATGA-------GACATTGCTCCATCTCAAGAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeRem4.Crem_Contig0   1672688 130 -  4500979 I

a score=-29343.000000
s ce10.chrX              4764126 73 + 17718866 ATTATAAAAA-------ATTGG--TTGAGCCATTTAATGATTTATGCAACTTTTTATGAAACGTCT-----CGTACTGAAA-TTTGAT-------------------------------------
s cb4.chrX              10100364 66 + 21540570 --GCCAAGCTGGGGTGGGTCGG-AATTGGCcttaaaaatttctgta-aGCTTTTCAGCCAGAGCTT------------CAA-T------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672818 50 -  4500979 GTTCTAAATT--------------ATTGGTCAGCAGAGTGGAGATA-AAATTTTCAT-----GCTT------------CAA-T------------------------------------------
i caeRem4.Crem_Contig0  I 130 C 0
s caeSp111.Scaffold409      7038 60 -   201088 -----------------TTCGT--ACTAGACGCgaga--------------tttca------gtttttatgtG-AAAGCAA-TTTGTATTAGAAAC------------------------TTGGT
i caeSp111.Scaffold409  C 0 I 25
s caePb3.Scfld02_0       3024617 91 +  4147112 -----------------ATCGTGAACTAGTTGacagaaaacttgt-----tttcca------GCTT-----TG-AGggcaattttgaaatatggacTTCAAAGTGAAAGTTGCAAGTTAATTGat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-2275.000000
s ce10.chrX              4764199 16 + 17718866 AATTGTATT-----------------CCATTTT
s cb4.chrX              10100430 10 + 21540570 CAc-----------------------acatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672868 24 -  4500979 AATTGTATCTAGGAAGG---------ACAATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3024708 21 +  4147112 ------------aaaagttttatgatacatttt
i caePb3.Scfld02_0      C 0 I 179
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeSp111.Scaffold409      7098 25 -   201088 I

a score=-740.000000
s ce10.chrX              4764215 2 + 17718866 GA
s cb4.chrX              10100440 2 + 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672892 1 -  4500979 A-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3024729 179 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeSp111.Scaffold409      7098 25 -   201088 I

a score=-3034.000000
s ce10.chrX              4764217 31 + 17718866 ACATATGTTTTTCTTCTAAGATT-AAGAATTT
s cb4.chrX              10100442 21 + 21540570 ---agttttgctCATCAAAAGTTT--------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   1672893 12 -  4500979 -----------TCGACTAAGGtc---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7123 28 -   201088 ACAGATATTAATTTCCTAATATT-AAGAA---
i caeSp111.Scaffold409  I 25 C 0
e caePb3.Scfld02_0       3024729 179 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-672.000000
s ce10.chrX              4764248 15 + 17718866 ATACAATTTAAACAA
s caeRem4.Crem_Contig0   1672905 10 -  4500979 -----atttcatcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7151  7 -   201088 ----AATGTAA----
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3024729 179 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I
e cb4.chrX              10100463 14 + 21540570 I

a score=-17675.000000
s ce10.chrX              4764263 110 + 17718866 AAAACTATGTTTTTTTCTATTAGTATTGCATGCAAAACGTTTTTGTT----------GGACTAATTTCGAGTGCAATAGTAATAGAGAATACGGCCAGTA-GCTGTCTATACCAGCAGGAA
s cb4.chrX              10100477 114 + 21540570 AAAACTA---TTTAGTTTGGTAGGATGATATGgacaaactttgaaattgaagCTAATAGAGACGCATTAAGTCATACTTGAACAG---TTTTCTTTAAAG-GTCAACAACACGAACATGAA
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1672915  36 -  4500979 ---------------------------------------------------------aaacacaTGTT--------------------TTATCTTTGATGAGTTAACCAGCCA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7158  36 -   201088 --------------------TCGGACTACAGGAATA---------------------CCACAAGTATCTAGTAGAAT--------------------------------------------
i caeSp111.Scaffold409  C 0 I 1
e caePb3.Scfld02_0       3024729 179 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-5788.000000
s ce10.chrX              4764373 325 + 17718866 --TCAAACTTATTTGAA-------------GACGT------------CTCAATTCTATTTTAAAACTTTTTTTTCA------------------GAGAGTAC-----------------------------ATTTTCTGCAAGACGGCCTTTGGCACAAGTCAAATGTGA-------------------ACTCAAACGTGTTAATA--AAAATCAAA-GAACACCGATCACTCGGTGTGTAAATTATTCACCGACGGGAGGTGTCAACGA--GTGTTGTGCTGCTAAAGGTTTCGAGATACAATCTCTAAGTAAAAAAAACAAAGCAC-----GTGGTAATG-----TGGTCTG---------AGATACAGCTGTG-----------------GTCGGTTTC---GCCTTTCGATGTATTT------------------TATATGGAAACAATGAAGCATATAC--------TAATTAATTAGGGGTC------
s cb4.chrX              10100591 356 + 21540570 TTTAAGTTTGTTTTGAA-------------TAATT------------TGCACTATTA--GGATGACGTTATTCAAAC-----------------GATGATACACTTGAAACTAAAACAAT-----------Agtttctgaaagacaa--------gaGTGATTAACTTTTCTTGGGACCACAAGTAATAGTTCATAAGTGTGAATGCTGTGCTCAAACGGTTACCGATTAGCCGCCCGTTGAATTATTCACAGTC-GGGGGTGTCAATGGTGGTGTTGTCTGCC-AAATGTTT-TAGATACAATCTCTTaaagaacaaaa------acaaaatgtgGTAATGTCTCTTCAAGAA---------AGAGACACGTGTG-----------------GTCTGTCGGCAAGcttcaaaaactattt---------------------------ataATTAAGCG-------------TGGCTAATGGGTTAAGTTCTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1672951 279 -  4500979 -----------TTTCAA-------------GATTT------------CACA----------ATAACATTCT-------------------------TAATACAC--GAGACTA-----------------------CTG----------------------TGAACTTGT-----------------------ATAAGTGTGAATG--GAAGTCAAA-GAGCACCGATGACTTGAT--GTAAATTATTCACCGACAGGGGGTGTCAAAGATTGTGTTGTATTT---AATGTTT-TAGATACAATCTCTC-ATGGTTAAAA------AC-----GTGGTAATG-----CAGGGGA---------AAACACACCTGTC-----------------GAAGGATACGGGGCAGCAAGTATTGTCTGCACTA---------------ATGGGAACAATGAAACGTATGCTCATTAAATGGCgaatggaaaa-------a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7195 323 -   201088 --CTGGCTTTTCT-----------------CAGTT------------CATTAAATG--------------------------------------CATAATGAAAGT-------------------------ATTTTCCGAGACACGA--------GTCAGTCTAATGTGA-------------------ATTCATACGTGTGAATA--CAAATCAAA-GAACACCGATAACTTGAA--CTGAATTATGCACCGACAGGGGGTGTCAAAAATGgtgttattcaa--aaatgttt-gagatacaatctaaaaataaaagcaA------AC-----GTGGTAATG-----TATAGA----------AAACACACCTGTcataaagagagagaaagaagaagatatggGGCGGTCTGTTCTGTCAAGATGTGTGCGTTCAGGTAATAAAGAAACAATAAAGCACATGT--------CGGCTAATTGAAGG--------
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3024908 382 +  4147112 --TCAGAACTTCTTGAAATCGCCAAGGCTCCAGTTCCCAAATGAAGAcataaaatga--acaaaatgttttgcgGATATCCGAATCTTCTCAACTACAATGCAAGTGTTCTCAGTTCATTAACTTCAACCAATTTTCTGCGACACG------------CGCCTAATGTGA-------------------ACTCATACGTGTGAATA--CATGTCAAA-GAACACCGATAACCAAAG--CTAAATTATTCACCGACAGGGGGTGTCAAAGACGGTGTTCTTCTA--AATTG-TT-AAGATACAATCTCAAAGTAAGAAACA------AC-----GTGGTAAtg-----ttgagaaaacaaaactaaacACACCTGTC-----------------GGAGTATAT-GAGCGGCGTGAT----------------GGTCAGA----GAGGAGACAATAGAGCATATGT--------TGCCTAATTGGGAGAC------
i caePb3.Scfld02_0      I 179 I 135
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-6773.000000
s ce10.chrX              4764698 64 + 17718866 TGTGTAAGTGTGGTATG---TGATATG-----AGCGAAAAATATTGAAACATGGATTTTAAGTTT-ACTCAAA----------
s cb4.chrX              10100947 62 + 21540570 TGTGTCAATGTTTTAAGATTTATCTTT-----AAAACAAA----GCAAAGTGAGAATTTG-GTGT-AATTTGA----------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1673230 65 -  4500979 tgggaatagaTATAAAG---TATTTCC-----AATGCAAAAAACGCAGATCAAAAGTTTGAATGTGAGTTTGA----------
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold409      7518 80 -   201088 AGCGCGGAACATTAAAG---GAAGTCCATCGAAATATATAAAGAACGAATTTAAAGTTTAAATCTGAactttagttttttaaa
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3025290 135 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=-2791.000000
s ce10.chrX              4764762 38 + 17718866 TCATTTTCTGattttt--------tttaaatttaataa--taataata------
s cb4.chrX              10101010 32 + 21540570 -------CTAACTTTA--------TTTCCGTTCAAAA---CTACACCATC----
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold409      7598 47 -   201088 -------acagtTTTAAATATCACactctcttcaaaaatgttatAATTTCAGTG
i caeSp111.Scaffold409  C 0 I 99
e caePb3.Scfld02_0       3025290 135 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeRem4.Crem_Contig0   1673295 61 -  4500979 I

a score=-359.000000
s ce10.chrX              4764800 15 + 17718866 aaatatGTATGGGCA
s cb4.chrX              10101042 10 + 21540570 GAATA-----GTTCC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3025290 135 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeSp111.Scaffold409      7645 99 -   201088 I
e caeRem4.Crem_Contig0   1673295 61 -  4500979 I

a score=-1551.000000
s ce10.chrX              4764815 27 + 17718866 TGTTCAGTTTTAAAAACTGTTCTCC----------TT
s cb4.chrX              10101052 10 + 21540570 ---------------ACTTTACTAT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673356 37 -  4500979 TgcacattttccaaaactttgttttttagTAACTTAT
i caeRem4.Crem_Contig0  I 61 C 0
e caePb3.Scfld02_0       3025290 135 +  4147112 I
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeSp111.Scaffold409      7645 99 -   201088 I

a score=-8405.000000
s ce10.chrX              4764842 46 + 17718866 TTGTTTCCTGGTATATGTCTCATATTGTGCAGTTGTAGTCGGTTTG---------
s cb4.chrX              10101062 13 + 21540570 ------------------------------------------TAAAACATGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673393 48 -  4500979 CCACTATGAGACCTATTTT---TCTTG----GTGTGAAGACGTTAAAcatgtttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3025425 46 +  4147112 TTATTCTTTTGCACATTTTCAATGTTG----ATTCTTTAACGTTTACAAT-----
i caePb3.Scfld02_0      I 135 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I
e caeSp111.Scaffold409      7645 99 -   201088 I

a score=8878.000000
s ce10.chrX              4764888 46 + 17718866 GACTAACATGCTTATATTAATTCATTG-TGACTTTACAAGTC-----AACAG
s cb4.chrX              10101075 40 + 21540570 ---CCCAATGTTTTCATAAACTCATTT---------GACTGCTTTCTTAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673441 42 -  4500979 -----caatgttttcataaACTAATTTAGGGATCAAGAAGGC-----AAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7744 46 -   201088 tgtttcaatgttttcataAACTCATTT-GTGGTTAAGAAGTC-----AACTA
i caeSp111.Scaffold409  I 99 C 0
s caePb3.Scfld02_0       3025471 46 +  4147112 gtcttcaatgttttcataaaCTAATTT-GGGCTTAAGAAAGC-----AACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   159740 536 +   591668 I

a score=197147.000000
s ce10.chrX              4764934 346 + 17718866 T-----TT-GAAAAGCGTCATCTTTGCA----GCTCAATTACTT-AAAAGGGTC--GTGTTATTGGAATGAGATGTGTGTGGATGGTGTCTGC---ATGCGCATACTGGATAA--ACGTCAAATTAGCAATATGGTTAACAATAATGGACTAAG---------------------AAAGACGTATATATTCTTCTCTTCAAACATCCCACATT----------TTCGTTGATGAGC---------------------ACTGGTAGGT------TAAAGGGGATAGAGTCAC--------ATAGTTGACAGTCACCGTT--------TTCTCGTTACCTAGAGTGCTAATCCCT-GGCAACCGGAACGA-----------GTGTGAAAGG---TACAATAACATA-CTGTACGGATTAAACTGACATTGGGGGGCAATTATAAGATATGGTTACG
s cb4.chrX              10101115 375 + 21540570 T-----GTCAAAAGGCGTCATCTCTGCA----GCTCAATTACTTAAAAAGGGTCCGACGTTATTGGAATGAGATGTGCGTGG-TAGTGT-GGTATGATGCGCATACTGGATAAACACGTCAAATTAGCAATATGGTTAACAATAATGGACTAAGT-------------------AAGAGACGTTTCC-CTCCTTTCCTCAAACATCT--CATT----------TTCGTTGATGAGCCTCCTCATTGAACGAAAACAGAAAAGGACGA------CGGGGGAGAAATGGTCCG-------------GTGGCAACACTGCC----ATTTTTGGCAACACCTG-GGTGCTAATCCAC-AGCAACCGGAAAAAT--------GGGGCGAGAGTGGAATGCAATAACATACCTTTTAGGATTAACAGGACA---GTGTGCAATTATGAGATATTGTTACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673483 344 -  4500979 T-----GT-AAAAGGCGTCATCTTTGCA----GCTCAATTACTT-AAAAGGGTC--GTGTTATTGGAATGAGATGTGCGTGGATGGAGT-GGC---ATGCGCATACTGGATAA--ACGTCAAATTAGCAATATGGTTAACAATAATGGACTAAG---------------------AAAGACGTTTCC------TTTCTCAAACATCT--CAAT----------TTCGTTGATGGAC---------------------ACAAGGCGAT------TTAGAGGGAAAGGGGCCACTTCCCCCACGATGTGTGGATACTGTA------TTCTCCCAACACCTGAGGTGTTAATCCTT-AGCAACCGGAACAA-----------GACGAAGGTG---TGCAATAACATA-CTGCACGGATTAACCTGACA---GTGTACAATTATGAGATATTGTTACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      7790 334 -   201088 T-----GT-AAAAGGCGTCATCTTGACA----TCTCAATTACTT-AAAAGGGTG--TTGTTATTGGAATGAGATGTGCGTGGATGGTGT-GGC---ATGCGCATACTGGATAA--ACGTCAAATTAGCAATATGGTTAACAATAATGGACTAAG---------------------CAAGATGTATCC------TTCCTCAAACATCT--CATT----------TTTGTTGATGAGC---------------------ACAATAAAATGGAATGAGAGGGGGGAAATGCCTA--------GTGGTGGATAGCTACAGTA---------TCTTGTCACCTA-AGTGCTAATCTCT-GTCAACCGGAACAG-----------GAAGGCGAGG---TGCAGTAACAGA-CTGTGCGGATTAA----CCT---GTCCACAATTATGAGATATTGTTACA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3025517 340 +  4147112 TGTGAAGT-GAAAGGCGTCATCTTGGCA----GCTCAATTACTT-AAAAGGGTG--TTGTTATTGGAATGAGATGTGCGTGGATGGTGT-GGC---ATGCGCATACTGGATAA--ACGTCAAATTAGCAATATGGTTAACAATAATGGACTAAG---------------------GAAGACGATGTC------TTCCTCAAACATCT--CATT----------TTCGTTGATGAGC---------------------ACTATAAAGT----------GAGGGAAAGTCACA-----------GTGGATTGCTACAGTGCCGATATTTTCTCGTCACCTA-AGTGGTAATCCCTCAGAAACCATAACAG-----------GAAGAGGAGG---TGCCATCACATA-TTGTCGGGATTAAGGTGACA---GTATATAATTATGCGATATTGTTACG
i caePb3.Scfld02_0      C 0 I 590
s caeJap4.Scaffold17934   160276 386 +   591668 T-----TC-CAAAGGCGTCATCTTTGCAATGTGCTCAATTACTT-AAAAGGATG--GTGTTGTTTGAATGAGATGTGTCT--ATGGCTT-GGC---ATGCGCATACTGGATAA--ACGTCAAATTAGCAATATGGTTAACAATAATggagtaagtaagtaagtaagtaagtaagaaaAGACGTGTGTATTTCTGTCCTCAAGCATCT--TACTTCTTTCCTTATTCAGCGACGAGT-------------GAGCCAGGACAAAAATGA------TGGAAGAGGAATAGCAGG----------TGCTATCTGAAACGGTC--------TCACCGTCACCAG-GCTGTTAATC----CGCAACCGGAACAGTACCAAACAAGGCAGGAAAGG---TGCAATAACATA-CTGTCCGGATTACCCTGACA---GTGTTCAATTAAGAGATATTGTTACG
i caeJap4.Scaffold17934 I 536 C 0

a score=-374.000000
s ce10.chrX              4765280 1 + 17718866 T
s cb4.chrX              10101490 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673827 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      8124 1 -   201088 T
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   160662 1 +   591668 T
i caeJap4.Scaffold17934 C 0 I 270
e caePb3.Scfld02_0       3025857 590 +  4147112 I

a score=2478.000000
s ce10.chrX              4765281 16 + 17718866 AAAATATCACGACAAT
s cb4.chrX              10101491 16 + 21540570 TTGACGTTACGAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673828 16 -  4500979 TTGACATTACATAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      8125 16 -   201088 TTAGTGTTACGAGAAT
i caeSp111.Scaffold409  C 0 I 216
e caePb3.Scfld02_0       3025857 590 +  4147112 I
e caeJap4.Scaffold17934   160663 270 +   591668 I

a score=-731.000000
s ce10.chrX              4765297 2 + 17718866 CT
s cb4.chrX              10101507 1 + 21540570 T-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1673844 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 I 369
e caePb3.Scfld02_0       3025857 590 +  4147112 I
e caeJap4.Scaffold17934   160663 270 +   591668 I
e caeSp111.Scaffold409      8141 216 -   201088 I

a score=855.000000
s ce10.chrX              4765299 9 + 17718866 CTGAAACTG
s cb4.chrX              10101508 9 + 21540570 CTGAAACTG
i cb4.chrX              C 0 I 1006
e caePb3.Scfld02_0       3025857 590 +  4147112 I
e caeJap4.Scaffold17934   160663 270 +   591668 I
e caeSp111.Scaffold409      8141 216 -   201088 I
e caeRem4.Crem_Contig0   1673846 369 -  4500979 I

a score=0.000000
s ce10.chrX              4765308 1596 + 17718866  
e caePb3.Scfld02_0       3025857  590 +  4147112 I
e caeJap4.Scaffold17934   160663  270 +   591668 I
e cb4.chrX              10101517 1006 + 21540570 I
e caeSp111.Scaffold409      8141  216 -   201088 I
e caeRem4.Crem_Contig0   1673846  369 -  4500979 I

a score=1560.000000
s ce10.chrX              4766904 53 + 17718866 CTCCAAAATATTGCATAGCGTTTT-GTTTTACCACA--------TGTTCAATATTTGAACTC
s caePb3.Scfld02_0       3026447 62 +  4147112 ccctGAAGTATACcataatgttttcaatttaccAAAAATGTAgtcattcaattttcgaactc
i caePb3.Scfld02_0      I 590 C 0
e caeJap4.Scaffold17934   160663 270 +   591668 I
e cb4.chrX              10101517 1006 + 21540570 I
e caeSp111.Scaffold409      8141 216 -   201088 I
e caeRem4.Crem_Contig0   1673846 369 -  4500979 I

a score=-966.000000
s ce10.chrX              4766957 36 + 17718866 -------------------TTCTTTTTGCATAATAA----------------TTTCGTGTTTAATTCCCTA
s caeSp111.Scaffold409      8357 36 -   201088 -------------------TTCCTTCTGTAAGAaca----------------catcatttttcatcgtcCG
i caeSp111.Scaffold409  I 216 C 0
s caePb3.Scfld02_0       3026509 71 +  4147112 TCGTATTATTTGTCGAATATCCCTTCCGTAATAAGAATTGAAATATTCCTATCACCGaacttcatcatcat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   160663 270 +   591668 I
e cb4.chrX              10101517 1006 + 21540570 I
e caeRem4.Crem_Contig0   1673846 369 -  4500979 I

a score=-2931.000000
s ce10.chrX              4766993 8 + 17718866 CCTTCTAG-
s cb4.chrX              10102523 8 + 21540570 -ctttcctt
i cb4.chrX              I 1006 C 0
s caeSp111.Scaffold409      8393 3 -   201088 -----TCC-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3026580 3 +  4147112 -----cat-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   160663 270 +   591668 I
e caeRem4.Crem_Contig0   1673846 369 -  4500979 I

a score=14623.000000
s ce10.chrX              4767001 28 + 17718866 TCTTCTGAAGCACTTTGCTTTGAATCAT
s cb4.chrX              10102531 28 + 21540570 tctaTTGAAGCACTTCGGTTCatttcct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1674215 28 -  4500979 TCTATTGAAGCACTTTGGTTCGTTTCCT
i caeRem4.Crem_Contig0  I 369 C 0
s caeSp111.Scaffold409      8396 28 -   201088 CCATTTGGAGCACTTTGGTtagtttctt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3026583 28 +  4147112 ctttttaaAGCACTTTGGTTCGTTTCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   160663 270 +   591668 I

a score=163898.000000
s ce10.chrX              4767029 400 + 17718866  
s cb4.chrX              10102559 444 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1674243 400 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      8424 406 -   201088  
i caeSp111.Scaffold409  C 0 I 43
s caePb3.Scfld02_0       3026611 417 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   160933 450 +   591668  
i caeJap4.Scaffold17934 I 270 C 0

a score=5573.000000
s ce10.chrX              4767429 52 + 17718866 CACGAGTTCAGCTCCCTC--TCCTTCAACGCCTCGTGGCTACCACCACCGCCAA
s cb4.chrX              10103003 40 + 21540570 CATGAGTTCAGCTCTCTT--T-CTTTAA--------GGCAACTATTCCCAT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1674643 49 -  4500979 catGAATTGAGTTCCCTT--TGCTTTAAAGCCTCTCGACAACTATCACCAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3027028 43 +  4147112 CACGAATTGAGTTCTCTTAATGTTTCGT--------GACAATTATCACCAT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   161383 46 +   591668 -CCAGATTGA--TCAATT--TTCGTATACACTTCCCGACAGCTTCCACCGT---
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409      8830 43 -   201088 I

a score=165406.000000
s ce10.chrX              4767481 241 + 17718866 TTTTGGCTCTTCCATTCAAGTGCTTCGTATCA------TGCACGATCTTTGTTTTGTAAACTGATGTTTGATTGATTATTCTGGAAGACAA-------AGCACAATTAC----AACGCGTTTTCGAAATTGACA-----ACAAACCTGTCACTTTTACGCCGGTCTCCAAAATATGTCTTTATGACCAGTTGACGGAAACTTGGGTTCAGCCACGCATAGAGTACCGGGTTTAAAACATTGTTCGACATGGCAATACTAGAAA---------
s cb4.chrX              10103043 241 + 21540570 TCTTCATTCGtccatttgaatttttcgcctCA------TTCAACATCTTTTGCTTGTAAAGCGACGTTTGATTGATGATTCTA--AAACAA-------TGgcgaatcat----tttgaaaactaagaaCATGCA---CTGCTAACCTGTCACTTTTGCGACGATCACCGAAATACGTTTTTATAACCAATTGACGGAAACTTGGGTTGAGCCATGCGTAGAGTACAGGGTTTACGACGATATTTGACATCGCGATgctaaaaa---------
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1674692 243 -  4500979 TTTTAACCCGTCCATTCAAATGCTTCGTGTCA------TGCACAATTTTCGTTTTGTAAACCGATGTTTGATTGATGATTCTG--AAAGGA-------TGATACattatttcatttctattgTTTGAAGGTGCA-----ACAAACCTGTCACTCTTGCGGCGATCACCAAAGTACGTTTTCATTACCAATTGCCGGAAAGTTGGATTGAGCCATGCGTAGAGCACAGGGTTTACAACATTATTTGACATTGCAATGCTGAgaa---------
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold409      8873 237 -   201088 TTCTAGCCCGCCCATTCAAGTGTTTTGAATCA------TGCACAATCTTTGTCTTGTAAACCAATGTTTGATTGATGATTCTT-AACACAA-------AGACCCATA------TTTCTTTCGTTTAAACTTGCA-----ACAAACCTGTCACTTTTGCGACGATCACCAAAGTATGTTTTTATAACCAATTGACGGAAAGTTGGGTTGAGCCAGGCATAGAGGACCGGGTTGACCACATTGTTTGACATTGCGATACTGAAA----------
i caeSp111.Scaffold409  I 43 C 0
s caePb3.Scfld02_0       3027071 245 +  4147112 TTTTAACTCGTCCATTCAAATGTTTCGCATCG------TGcacaattttcgttttgtaAACTGACGTTTGATTGATGATTCTG-TAAACAATAGGAATTGATTCGTT------GTCTACATGACAAGAATTGCA-----ACAAACCTGTCACTTTTGCGACGATCACCAAAGTATGTTTTTATTACCAATTGACGGAAAGTTGGATTGAGCCAAGCGTAGAGAACTGGGTTGACCACATTGTTTGACATTGCAATACTGGaag---------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   161429 257 +   591668 TTTTTAAGCGtctattcaaatttttcgcgTCATTTGTGTGCGCAATTTTCGACTTGTAGACCGATGCTTGATTTATAATtcta--aaaaat-------catcaaatg------GTTCTCTTTTCTCAGATTGCTTTGTTGCAAACCTGTCACTTTTCCTTCGCCCGCCAAAGTACGTCTTTACAACCAGCTGGCGGAAAGTTGGATTGAGCCAGGCATATAGCACCGGATTTACGACGTTGTTAGACATTGCAATGCTGAATTGAagaacaa
i caeJap4.Scaffold17934 C 0 C 0

a score=-274.000000
s ce10.chrX              4767722 14 + 17718866 CGTTAA-AATTAATA
s cb4.chrX              10103295 14 + 21540570 cgttta-aaaaaatc
i cb4.chrX              I 11 C 0
s caeSp111.Scaffold409      9110 15 -   201088 TGTAGACAATGAATA
i caeSp111.Scaffold409  C 0 I 20
s caePb3.Scfld02_0       3027322 14 +  4147112 tgttga-aatgtttg
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   161686 14 +   591668 catttt-ttttaata
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1674935 22 -  4500979 I

a score=688.000000
s ce10.chrX              4767736 7 + 17718866 TTTGCAA
s cb4.chrX              10103309 2 + 21540570 -----aa
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       3027336 7 +  4147112 atttcaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   161700 7 +   591668 gttctaa
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409      9125 20 -   201088 I
e caeRem4.Crem_Contig0   1674935 22 -  4500979 I

a score=-140.000000
s ce10.chrX              4767743 6 + 17718866 A-AACAT
s caePb3.Scfld02_0       3027343 7 +  4147112 agaaCAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   161707 6 +   591668 -aaaaaT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10103311 5 + 21540570 I
e caeSp111.Scaffold409      9125 20 -   201088 I
e caeRem4.Crem_Contig0   1674935 22 -  4500979 I

a score=-85.000000
s ce10.chrX              4767749 4 + 17718866 GAAA
s caePb3.Scfld02_0       3027350 4 +  4147112 TAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   161713 0 +   591668 C
e cb4.chrX              10103311 5 + 21540570 I
e caeSp111.Scaffold409      9125 20 -   201088 I
e caeRem4.Crem_Contig0   1674935 22 -  4500979 I

a score=0.000000
s ce10.chrX              4767753 555 + 17718866  
e caePb3.Scfld02_0       3027354   0 +  4147112 C
e caeJap4.Scaffold17934   161713   0 +   591668 C
e cb4.chrX              10103311   5 + 21540570 I
e caeSp111.Scaffold409      9125  20 -   201088 I
e caeRem4.Crem_Contig0   1674935  22 -  4500979 I

a score=393.000000
s ce10.chrX              4768308 7 + 17718866 TAAAATC
s caeRem4.Crem_Contig0   1674957 7 -  4500979 taAAGTT
i caeRem4.Crem_Contig0  I 22 C 0
e caePb3.Scfld02_0       3027354 0 +  4147112 C
e caeJap4.Scaffold17934   161713 0 +   591668 C
e cb4.chrX              10103311 5 + 21540570 I
e caeSp111.Scaffold409      9125 20 -   201088 I

a score=-260.000000
s ce10.chrX              4768315 2 + 17718866 AA----
s cb4.chrX              10103316 2 + 21540570 aa----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1674964 6 -  4500979 AATGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9145 2 -   201088 AA----
i caeSp111.Scaffold409  I 20 C 0
s caePb3.Scfld02_0       3027354 2 +  4147112 AA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   161713 0 +   591668 C

a score=153542.000000
s ce10.chrX              4768317 173 + 17718866 ACCTGTGAGTGAAAAGGTTCAGTAAATAACTGATATCGTAATCATCTCTGCCATAAAGTCGGAAAAACGATTGTGTGTCATCATATTCAATAATCAAAGAAATGACGTTATGTGGCAGCCAAGTTATCCCAAACCAGACAACCATGGTAACTAGGATTGACGTTGTTCTAAAA---------------
s cb4.chrX              10103318 173 + 21540570 acctGTGAGTGAACAGATTCAGCAAATAACTGATGTCGTAATCATCTCTGCCAAATAAACGGAAAAATGATTGAGTTTCATCATATTCAATGATTAATGAAACCACGTTATGTGGAAGCCAAGTGATGCCAAACCACACGACCATGGTCACAAGAATCGACGTTGTTCTGGAA---------------
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1674970 173 -  4500979 ACCTGTGAGTGAATAGATTGAGTAGGTAACTTATATCATAGTCGTCTCTTCCATACAACCGAAAGAATTGTTGAGAGTCGTCGTATTCAATTATTAATGAAATCACATTGTGTGGAAGCCAAGTTATTCCGAACCAAACCACCATTGTGACAAGAATCGATGTAGTTCTAAAA---------------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409      9147 173 -   201088 ACCTGTGAGTGAAAAGGTTCAGCAAGTAACTGATATCGTAATCGGCACGTCCGTATAGACTGAAAAACTGCTGCGAGTCGTCGTACTCAATTATTAATGAAACAACATTGTGTGGGAGCCACGTTATTCCAAACCAGACCACCATCGTCACAAGAATTGATGTAGTTCTGGAA---------------
i caeSp111.Scaffold409  C 0 I 21
s caePb3.Scfld02_0       3027356 173 +  4147112 ACCTGTGGGTGAAAAGATTAAGTAGATAACTGATATCGTAATCATCTCTTCCGTATAACCGGAAGAACTGCTGTGAGTCGTCGTATTCAATGATCAAGGAAATCACATTGTGTGGAAGCCAAGTTATTCCAAACCAAACAACCATTGTGACAAGGATTGAAGTAGTTCTAAAA---------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   161713 188 +   591668 ACCAATGAGTGAAAAGATTGAGCAAGTAGCTAATGTCATAATCATCTCTTCCAAACAAGCGGAAAAATGACTGTGAATCATCATACTCAATGATTAGAGAGATGACATTGTGTGGCAACCATGTAATGCCAAACCAGACAACCATAGCTACCAGGATTGAAGTTGTTCTGcaattaaagaaaataaat
i caeJap4.Scaffold17934 C 0 C 0

a score=-2631.000000
s ce10.chrX              4768490 17 + 17718866 CACAAATAGTATTTCGG
s cb4.chrX              10103492 11 + 21540570 ------TGGATTTCagt
i cb4.chrX              I 1 I 9
s caeRem4.Crem_Contig0   1675146 17 -  4500979 TATTGGTGAGGTTCATG
i caeRem4.Crem_Contig0  I 3 I 7
s caePb3.Scfld02_0       3027533 17 +  4147112 CCCTTTtggaaataata
i caePb3.Scfld02_0      I 4 I 5
s caeJap4.Scaffold17934   161901 17 +   591668 tacaaACAAGAACaaag
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409      9320 21 -   201088 I

a score=294334.000000
s ce10.chrX              4768507 391 + 17718866  
s cb4.chrX              10103512 398 + 21540570  
i cb4.chrX              I 9 I 31
s caeRem4.Crem_Contig0   1675170 386 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409      9341 387 -   201088  
i caeSp111.Scaffold409  I 21 C 0
s caePb3.Scfld02_0       3027555 389 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   161918 526 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=187.000000
s ce10.chrX              4768898 1 + 17718866 A
s caeRem4.Crem_Contig0   1675556 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9728 1 -   201088 G
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3027944 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   162444 1 +   591668 G
i caeJap4.Scaffold17934 C 0 I 24
e cb4.chrX              10103910 31 + 21540570 I

a score=-6458.000000
s ce10.chrX              4768899 42 + 17718866 CGAG----GGTACTAGTTGTATAAGAAGTTGAATACCTAGAAAAAA
s caeRem4.Crem_Contig0   1675557 31 -  4500979 cgaa-------aaaatatattt-------tgagatCTGACATAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9729 30 -   201088 Tcaa-------ttgatttattt------tcgaagACTTTC--AAT-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3027945 36 +  4147112 TTAGGAAAAGTTCAGGTTATGT---------AAGAGTTACGTAAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   162445 24 +   591668 I
e cb4.chrX              10103910 31 + 21540570 I

a score=98.000000
s ce10.chrX              4768941 5 + 17718866 ACGAC
s caeJap4.Scaffold17934   162469 5 +   591668 GTGAT
i caeJap4.Scaffold17934 I 24 C 0
e caePb3.Scfld02_0       3027981 0 +  4147112 C
e cb4.chrX              10103910 31 + 21540570 I
e caeSp111.Scaffold409      9759 0 -   201088 C
e caeRem4.Crem_Contig0   1675588 0 -  4500979 C

a score=160145.000000
s ce10.chrX              4768946 207 + 17718866 ACTCACTGTGTATTCAATCATTTGCATATTGAACGCATAGGGTAGAGTTACAACAAAAGAGAGGATCCACAATAGAACAGTAGTAAGAAATGCTCCTCTTTGGGATAGTGGTGTAGAATGTGGTCTTACTACAAGGATATACCGATCCAAAGCAATCGCACCGAGACTGAATGTGCATACGAAAATGCTGATACCTGAAAA---------AAAAAC------
s cb4.chrX              10103941 201 + 21540570 gcCTACCGTATACTCGATCATCTGCATATTAAAAGCATATGGGAGTGTGACAACAAAGGAAAGTATCCAGAGAAGGATTGTTGTTAAAAATGCACCACGTTGAGATAAAGGAGTTGTATGAGGTCTTACAACAAGGATGTACCTATCCAGAGCAATGGCTCCCAGACTGAAGGTGCACACGAATATACTGATGCCTAAAAA---------------------
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   1675588 201 -  4500979 ACTTACTGTATATTCAATCATTTGCATGTTGAAAGCATAAGGGAGAGTGACAACAAATGATAAGATCCATAACAAAACAGTTGTTAAAAATGCACCACGTTGAGATAATGGGGTCGTGTGAGGTCTCACTACCAAAATATACCGATCGAGTGCGATGGCTCCAAGACTGAAGGTACACACAAATATACTAATTCCTGCAAT---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9759 201 -   201088 TCTTACTGTGTATTCTATCATTTGCATGTTGAATGCATAAGGAAGGGTCACCACAAAAGATAAAATCCAAAGAAGAACAGTTGTAAGAAAGGCACCACGCTGAGACAACGGGGTGGTATGTGGACGGACGACCAGTATATATCGATCCAAAGCAATCGCCCCAAGACTAAATGTACACACAAATATACTGATTCctggaaa---------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3027981 215 +  4147112 ACTAACCGTGTATTCTATCATTTGCATGTTGAATGCGTATGGAAGGGTGACCACAAAGGATAAAATCCAGAGAAGAATGGTAGTTATTAATGCACCCCGCTGGGATAGTGGAGTTGTATGAGGTCTTACAACAAGTATATAACGATCAAGTGCAATTGCTCCGAGACTGAAGGTGCATACAAAAATGCTGATTCCTGAAAATACGgtaatagaaa-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   162474 207 +   591668 ACCTACCGTGTATTCCATCATTTGCATATTAAAGGCATATGGCAGAGTCACGACAAATGACAGTATCCAAAGAAGAACGGTTGTCAGAAATGCACCCTTTTGAGACAAAGGAGTGCTATGGGGTCTCACTACTAGAATGTATCTGTCCAGTGCTATGGCTCCAAGGCTGAATGTACAGACAAATATACTGATTCCTGAAAT---------------GTAAAT
i caeJap4.Scaffold17934 C 0 I 30

a score=-24130.000000
s ce10.chrX              4769153  10 + 17718866 GTCATTTTAA----------------------------------------------------------------------------------------------------------------------------
s cb4.chrX              10104142  18 + 21540570 ----TATTAGAAGTA--GCCTTCA--------------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1675789  20 -  4500979 ----TATCCATCATAAGACATTGA--------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9960  17 -   201088 -------------------attggaaac-------------------------taTCGTTT-------------------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3028196 129 +  4147112 ---attttgagtata--GCATTAGAAacgaaatgaacaaaattgatttttttgtctctttttttttgaatttcgataaTCAAGCTTCGAAACCTGACAAAATGCGACTTTCTTACTTTCTTACATTCATTCTAA
i caePb3.Scfld02_0      C 0 I 125
e caeJap4.Scaffold17934   162681  30 +   591668 I

a score=-12143.000000
s ce10.chrX              4769163 23 + 17718866 AAAACTTCTTGTTTTAGAAA----------------------------AAA
s cb4.chrX              10104160 15 + 21540570 --------------TCCAAATCTCTT----------------------ACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1675809 14 -  4500979 --------------ACTAAAAACTAT----------------------AT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9977 19 -   201088 --AA--CCATTTATTCTGAT----------------------------GCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3028450 51 +  4147112 gaaactccATGTTTTCCGACAATAATTAAAACCTCAAACAGTTAGCAAACC
i caePb3.Scfld02_0      I 125 C 0
e caeJap4.Scaffold17934   162681 30 +   591668 I

a score=147764.000000
s ce10.chrX              4769186 174 + 17718866 TACCTTGAATGCATGGTATCAAATGGCAGAGTAGATTTCCAAAGTACCAGTTTTTGTACACATTTGTGATTGGAGTGATTGGAAGCGATAATATGCACATCATGCAATCGCTCGCCGCCAGGTTCAGAATGAATATGTTTTGAACGCTCTGAAATTTAATGATAATTCACAGGA
s cb4.chrX              10104175 169 + 21540570 AACCTTGAATGCACGGAATCAAATGACACAGTAGATTTCCGAAATACCAATTTTTGTAGACATTTGTGATTGGAGTGATTGGTAGTGATAAGATGcacatcataatatcactagcTGCCAAATTGAGAATGAAGATGTTTTGAACGCTCTGAAATTTGTTTAGTACTCA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1675823 154 -  4500979 TACCTTGAATACACGGAATCAAATGACATAAAAGATTTCCGAAATACCAGTTTTTGTACACATTGGTAATTGGCGTAATTGGTAGAGATAGAATGCACATCATACAATCGCTAGCAGCCAAATTCAGAATAAAGATGTTTTGTACGCTCTGCAA--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409      9996 154 -   201088 AACCTTGGATGCACGGGATCAAGTGACACAGGAGGTTCCCAAAATACCAGTTTTTATACACATTCGTGATTGGAGTGATTGGTAGAGAAAGAATGCACATCATACAGTCACTTGCCGCCAAATTCaagatgaaaatgttttgcacactctgaaa--------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3028501 154 +  4147112 CACCTTGAATACATGGAATCAGATGACAGAGAAGATTTCCGAAATACCAGTTTTTATACACATTTGTAATTGGAGTGATGGGCAAAGATAATATACACATCATACAGTCACTTGCtgccaaattcaaaatgaagatatttTGTACactctgaaa--------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   162711 171 +   591668 TACCTTGAATGCATGGTATCAAATGGCATAGAAGATTTCCAAAATACCAATTTTTATAAACGTTGGTAATTGGAGTGATTGGCAGGGATAGTATGCACATCATAGAATCACTTGCTGCCAAGTTAAgtatgaaaatattttgaacacTCTGAAA---AATTATAATCCATTGAA
i caeJap4.Scaffold17934 I 30 I 86

a score=-11838.000000
s ce10.chrX              4769360 149 + 17718866 GAAGTGAAGGTTCTGGGATTTTTGATTGGACTAGTCAGAGTAAAAATCTTGATCCGCTTCAAAAAA-------TGTTAAAAACATTTTTGTGATGT----------------TCCATCACG---TATTTGGTTCGTTTTTGGAAAAATTCTTTCAAGAAGTGGTAATTACTCAGT
s cb4.chrX              10104344 110 + 21540570 -----------------ATTTTGAACTCAACATATCCACC-----------CTCCACTTTTCAataaaaagtgtttcaaa-----ctt------------------------tttcgcgCA-----CTGGACTCATACCGGAAGTGACCTTTTTAACAAAAGTGAGTTTCC---T
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1675977  90 -  4500979 ----------------------------GACATGTCAAAT----------GATTCTCTTCacaata-------ttttgaa-----ctttgag--------------------tTCAGCTCC-----C----CTTATATtaaactcaactttttt---caacgtTGGCTTCT---G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10150 114 -   201088 --------------------------------tttcaaac--------------ttctttCCGATT-------TATTGAA-----CTTTGAAATGTGTTTCCCCCATTTAACTCCAGCTCG-TTTTTTGCGTTGGCTCCGGAAACGACCTTTTTAACAAAAGTGAGTTTGA--GT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3028655 119 +  4147112 ------------------------------agtttgaaaa-----------ttgttttttccgagt-------tattgaa-----ctttgaaatgtgCTGTCCGTATTAACCTCAAGCGCGtttttttGCGTCGACTCCGGAAACGACCTTTTTAACAAAAGTTAGTTTCA---C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   162882  86 +   591668 I

a score=-5207.000000
s ce10.chrX              4769509 28 + 17718866 ----TTGACTGTCTATAAAATTTTTTTTTCTA
s caeRem4.Crem_Contig0   1676067  8 -  4500979 ----GTAAAACC--------------------
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold409     10264 11 -   201088 ----TTAGTTTCCTA-----------------
i caeSp111.Scaffold409  C 0 I 26
s caePb3.Scfld02_0       3028774 11 +  4147112 ----CCAGTTTCCTA-----------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   162968 15 +   591668 CTGACTGGCTATTCA-----------------
i caeJap4.Scaffold17934 I 86 C 0
e cb4.chrX              10104454 11 + 21540570 I

a score=0.000000
s ce10.chrX              4769537 40 + 17718866 GTTGTGAAACGTTTATTATGATATTTGGTTATATAGAATT
e caePb3.Scfld02_0       3028785  1 +  4147112 I
e caeJap4.Scaffold17934   162983  0 +   591668 C
e cb4.chrX              10104454 11 + 21540570 I
e caeSp111.Scaffold409     10275 26 -   201088 I
e caeRem4.Crem_Contig0   1676075 19 -  4500979 I

a score=3439.000000
s ce10.chrX              4769577 46 + 17718866 ATAAGAGTGTTTTTTTTTTTTGCCAAATATGTACGTCACTTTTCAA
s cb4.chrX              10104465 21 + 21540570 -------------------------CTTGCGTacgtcatttttgaa
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1676094 44 -  4500979 --AAAGTGAGTTTCCTAGTTTGCCTCATGCGTACGTCacttttgaa
i caeRem4.Crem_Contig0  I 19 C 0
s caePb3.Scfld02_0       3028786 29 +  4147112 -----------------TTTCACCCCCCGCGTAcgtcatttctgaa
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   162983 36 +   591668 ----------CCCTCTCGTTTGCCAAGTCAGTTCGCCTCCGTTCAA
i caeJap4.Scaffold17934 C 0 I 74
e caeSp111.Scaffold409     10275 26 -   201088 I

a score=18626.000000
s ce10.chrX              4769623  75 + 17718866 G--------TAGACATGGAT---AA------------CCTCGTCTCTCGTTAGCCGGGTGTCAGTA--------AGC----------TGTACGCACTATGCACTTCGAATCAAATT
s cb4.chrX              10104486  78 + 21540570 ataagaaaCTAGACACGACCCCGGGTACTCCTACG--TATTTTCTCTTGTTAGCT-------------------ACC----------CGTTCAAATAG-----TTT--ATTCAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1676138 100 -  4500979 ataagaaactAGACACAGCT---ATCCCTcctacgt-ttttttttctcgttagCTGGGTGCGGTTAACCCGTTAACC----------CGTTCGCACCGAGATActt--attgaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10301  88 -   201088 ATAAGAAACTAGACATGGCT---ATCCTTCCtacg--ttttttctcttgttagCTGGGTGCTA-----------ACC----------CGTTCGCATTACAAAGGTT--Attgaatt
i caeSp111.Scaffold409  I 26 I 73
s caePb3.Scfld02_0       3028815 100 +  4147112 ataagaaaCTAGACAAGGCT---ATCCCTCctacgtcttctttttctcgttaGCTCGGTGCTA-----------ACCCTCTAAACTGCGTTCGCACCAAGGAAGTG--ATCAAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163019  74 +   591668 I

a score=626.000000
s ce10.chrX              4769698 28 + 17718866 GTT-----CAGAGAACCCGA-AATTGTCA--ATTTT
s cb4.chrX              10104564 33 + 21540570 -TTGATaacagaaaaccaaa-aacgcGTCAAATTT-
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   1676238 28 -  4500979 -ttaa----agaGAACAAGACGATGTGCC--ATTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3028915 29 +  4147112 -TTGA---cagagaacaagaaaatgtgCC--ATTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163019 74 +   591668 I
e caeSp111.Scaffold409     10389 73 -   201088 I

a score=683.000000
s ce10.chrX              4769726 7 + 17718866 CCAAAAC
s caeRem4.Crem_Contig0   1676266 7 -  4500979 ATAGAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3028944 7 +  4147112 TTAGAGC
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold17934   163019 74 +   591668 I
e cb4.chrX              10104597 27 + 21540570 I
e caeSp111.Scaffold409     10389 73 -   201088 I

a score=-269.000000
s ce10.chrX              4769733 28 + 17718866 ----AGAACAAAATTT-GACCCGAAAA-------------AAAAAC
s caeRem4.Crem_Contig0   1676273 46 -  4500979 TTTGGGTTCAAAATTTAGACTCTGAcccccccccTCTTTTGAAAAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3028951 40 +  4147112 I
e caeJap4.Scaffold17934   163019 74 +   591668 I
e cb4.chrX              10104597 27 + 21540570 I
e caeSp111.Scaffold409     10389 73 -   201088 I

a score=38.000000
s ce10.chrX              4769761 1 + 17718866 G
s cb4.chrX              10104624 1 + 21540570 g
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1676319 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3028951 40 +  4147112 I
e caeJap4.Scaffold17934   163019 74 +   591668 I
e caeSp111.Scaffold409     10389 73 -   201088 I

a score=-427.000000
s ce10.chrX              4769762 2 + 17718866 AA
s cb4.chrX              10104625 2 + 21540570 gA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1676320 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   163093 2 +   591668 AA
i caeJap4.Scaffold17934 I 74 C 0
e caePb3.Scfld02_0       3028951 40 +  4147112 I
e caeSp111.Scaffold409     10389 73 -   201088 I

a score=-311.000000
s ce10.chrX              4769764 1 + 17718866 A
s cb4.chrX              10104627 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1676322 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10462 1 -   201088 C
i caeSp111.Scaffold409  I 73 C 0
s caeJap4.Scaffold17934   163095 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3028951 40 +  4147112 I

a score=148471.000000
s ce10.chrX              4769765 285 + 17718866 CGTACCAGTAAAGCTTTATGGCTGCAAGTTACGTAAATCAAGGTCACATTTCCAAAGAGTCCAAGAAAAAAGAGAAAAAGGTACACGGTCAGAAATGGCACTATCGCATATATACTTTGAGAAGGATCTGGATACACTTTCCAATATACTTGACAGTCGGTAAAATTTTCAACTTCCATTTGGCCTA----TGTCT-----GAAATTTTTT--------TAGTCTAATGGAGGAAAGAAAAATTGA-GGAAACAA-------------------------------AGATGAAA----GAGGGTGTTAACCAAATAGATTAAT----AGATAAAAAATAAAA
s cb4.chrX              10104628 287 + 21540570 CTCACCAACAAGGCTTTGTAACTACAAGTTACATAAATTAGAGTCACATTTCCAAATAGacccaaaaagaaaagaaatatgTAGACACAAAGAAACGGGACAATTGCATAGGTGCTCTGTGATGGATCCGGGTAGGCCTTCCAATAAACTTGGCAATCGGTAATGTTTCCATCTACCATCTGGCCTAGTAAtgtgttctggaaaattagtggtgtaaatt--tc---------------aaatatc-aaGAACGAGAGGG-------------------------TTTGTGGGA----AGAACT----AGTAGCAAGATTAAA----AACTAAGAATTAAAA
i cb4.chrX              C 0 I 1622
s caeRem4.Crem_Contig0   1676323 281 -  4500979 CTTACCAGTAGAGCTTTGTGACTGCAAGTGACATAGATTAAAGTCACGTTTCCAAATAGtccgagaaaaaagagaaaaaggtaCACGCATAGAAATGGAACGATTGCGTATATACTTTGTGATGGATCTGGATAGACTTTCCAATAAACCTGACAGTCAGTGAAGTTTTCATCTCCCATTTGGCCtatgaatatct----gaaaacaaatg--------t--tc---------------agtttaa-aaaaataataaag-------------------------taGATGGCATAATAAGATTA--GAGTGACAGATTTGAA----GATAAAGTcgtaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10463 273 -   201088 CTTACCAGTAGAGCCTTGTGACTGCAAGTGACATAGATCAGAGTCACATTTCCGAATAAtccaagaaagaagagaaaaaggtaaACACAAAGGAATGGGACGATTGCATATGTACTTTGAGATGGGTCCGGATAGACTTTCCAATACACTTGACAATCGGTGAAATTGTCATCTTCCATCTGGCCTATcgttatct-----gaaaaatatg----------------------------aatttaa-AGAGAAAGTATTG-------------------------TTTATGTGA----ACGCG------GAGCAAAGATTGAAAGACGATGAAGACGTAAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3028991 273 +  4147112 CTTACCAGTAAAGCCTTGTTATTGCAAGTGACATATATCAAGGTTACATTTCCAAATAGtccgagaaaaaatagaaaaaggtaTCCACAAAGAAATGGGACGATAGCATAAATACTTTGTGACGGGTCTGGATATACTTTCCAATACACTTGACAATCGGTGAAGTTTTCATCTTCCATCTGGCCTATGAGTATCT-----GAAGTGAGTG--------T--TCCATT--------GAAAatctgatagaaaaaa-----------------------------------gtga----aggcGT-----GAGAAAAGATTGAAAG--GATGAAGACGTAAAA
i caePb3.Scfld02_0      I 40 C 0
s caeJap4.Scaffold17934   163096 306 +   591668 CTTACCAGTAGAGCTTTATTACTGCATGTGACGTAGATTAATgttaaatttccgaaaagtcccAAAAAGAAGAGGAATAAATAGATACAGAGAAAGGGGATAATTGCGTAAATACTCTGAGATGGATCCGGGTAAACTTTCCAGTACACATGACACTCGGTGAAGTTTTCATCTTCCATCTGGCCTATAGTTACTG-----AAATCATTTG--------G--TCCAT------------AATTAAT-GAAAAGGAAAGCGATACGATACAACTTAAACATTTATaataatgaaa----atgaatattacatggaagaatgaaa----gaatgaaagaaaaaa
i caeJap4.Scaffold17934 C 0 C 0

a score=546.000000
s ce10.chrX              4770050 1 + 17718866 T
s caeSp111.Scaffold409     10736 1 -   201088 T
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3029264 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   163402 1 +   591668 t
i caeJap4.Scaffold17934 C 0 I 2637
e cb4.chrX              10104915 1622 + 21540570 I
e caeRem4.Crem_Contig0   1676604 0 -  4500979 C

a score=7994.000000
s ce10.chrX              4770051 147 + 17718866 CCTATAGTTTCCAGAAAGTGATTAGAGATTT-G---GCTGAGTATAATTCTTTCTTCTCATGTAAGCAAATTTTTAGG------GTTTTTTTAGCATGGCTTATGGCTTATAGAAA------TTAAATATTTCGTACTCACATCTTTAAAAACCCCAAAATTA
s caeRem4.Crem_Contig0   1676604 134 -  4500979 ttttgagtttttgtgtaGTGATTAAagattc-tttcaaaaattataattccATTTTACCATCAGCTTACACTGTGAGA--------TTCTTATGGA----TTATGGCTTCTTGGAATAGCagataaataag----------------aaaaaagttaaaatca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10737 119 -   201088 CCTCGAGTTTT--TCAAGTGATTAAAGATTT-GTTCATAAATTATAATTCGATT-TAGCTTCTACTAATACTgtgaga---------ttttcaaaa----ctacgGCTTCTAGGAAcatcaa--aaataag-------------------------agaatca
i caeSp111.Scaffold409  C 0 I 101
s caePb3.Scfld02_0       3029265 111 +  4147112 CCGCGAGTTTT-GTGTAATGATTAAAGATTTCGTTCGCAAATTATAATGCGATTCTAGCCTCAGATTATACTGTgagattttagattttttccgaa----ttatGGCTTCTAGGAA-----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I

a score=-2179.000000
s ce10.chrX              4770198 64 + 17718866 TACTATTTCTTGGCCCACTAACAGGTTCCCGGTCTAGACAATACGACAAAATTTTAA---------AATGCAA
s caeRem4.Crem_Contig0   1676738 52 -  4500979 ---------------TGAGATTTAG-----GAT-TGAagataataagaaaaaacaaagcagTCAAGAATGCGA
i caeRem4.Crem_Contig0  C 0 I 54
s caePb3.Scfld02_0       3029376 41 +  4147112 ------------------CAGCAGg-----aatgtgaagaagatgtgaaaatcgaaa---------aatgtga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     10856 101 -   201088 I

a score=125.000000
s ce10.chrX              4770262 10 + 17718866 CTTATAAAGA
s caePb3.Scfld02_0       3029417 10 +  4147112 ataatgagaa
i caePb3.Scfld02_0      C 0 I 68
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     10856 101 -   201088 I
e caeRem4.Crem_Contig0   1676790 54 -  4500979 I

a score=0.000000
s ce10.chrX              4770272 45 + 17718866 TTGTGTGCACTTATAAAGATTACTGTACTTTTCATTTCTCGTTGA
e caePb3.Scfld02_0       3029427 68 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     10856 101 -   201088 I
e caeRem4.Crem_Contig0   1676790 54 -  4500979 I

a score=-114.000000
s ce10.chrX              4770317 1 + 17718866 T
s caeRem4.Crem_Contig0   1676844 1 -  4500979 G
i caeRem4.Crem_Contig0  I 54 C 0
e caePb3.Scfld02_0       3029427 68 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     10856 101 -   201088 I

a score=3934.000000
s ce10.chrX              4770318 98 + 17718866 GAGTTTTGGTGGTCTTTTCATAGGTTTT--CTTACGAGTCTACAAAAATTTTATAAGTTTCAATATACAGTATTTTTTAAAGGTGCAAATGTTTTCAGTT
s caeRem4.Crem_Contig0   1676845 79 -  4500979 AAGTTGAAGTGGCTGGGTTTTGAGTTTTGCCTCAGGGATTGATTagagttttgaaag---------------------aaaagaacgAAAGTTCAAGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     10957 64 -   201088 --------------GGGTTTTGAGTTTTGCCTCAGGGATTGATTAGGGTTTTGGAA----------------------ACAAGAACGAAAGTTCAAAGTT
i caeSp111.Scaffold409  I 101 C 0
e caePb3.Scfld02_0       3029427 68 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I

a score=-4426.000000
s ce10.chrX              4770416 33 + 17718866 GACAAAAAAAACTTGTCGTGTTAAGATCAGGTT
s caeRem4.Crem_Contig0   1676924 18 -  4500979 -GTGTAAATAGC---------TCAG-----ATT
i caeRem4.Crem_Contig0  C 0 I 127
s caeSp111.Scaffold409     11021  3 -   201088 ------------------------------GTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3029495 22 +  4147112 --gacaaaaaag---------tgagaagaagtt
i caePb3.Scfld02_0      I 68 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I

a score=-7411.000000
s ce10.chrX              4770449 162 + 17718866 ----TAGTTAAGCTGTGAAATGGCAATATTTTGCATCTGGGTGATAAGGCAGTATAGGTGCAATACTTTTAAAAAATAGGGTAAGTCTAAT------TAGGTAGTTCAACCACATTGTAAGATCGGAGACCTTAA------------AACCAT-CTTGAGCTTTCAGAATGTATATTTTTGG-----------CGG---
s caeSp111.Scaffold409     11024 111 -   201088 GAAAAAGCTCAAATTCAA------CACATTTCGC-----GTTGA--------------CACAATCTTATAA--------------------------TAAATAGCTGAAC-------------------------------------AACCACCCGCGAACctcttatttttcgtttttcgacTCTGCTTTTCCGGTTG
i caeSp111.Scaffold409  C 0 I 72
s caePb3.Scfld02_0       3029517 162 +  4147112 gaagtggctgagttttga------aatttgccACAG-GGGTTGAT-------------tagagttttccaaaaaaggaacGAAAGTTCAAGGTTGTGCAAATAGCTCAACTTCCATACATCTCTATATACTTCTATACGTAGAACTGAACGACACTTgaaactcatatttttttgtctttgg-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeRem4.Crem_Contig0   1676942 127 -  4500979 I

a score=-594.000000
s ce10.chrX              4770611 20 + 17718866 AATACACCTGCGAATTGATA
s caePb3.Scfld02_0       3029679 12 +  4147112 aCTCCGCCCT--------TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     11135 72 -   201088 I
e caeRem4.Crem_Contig0   1676942 127 -  4500979 I

a score=-5257.000000
s ce10.chrX              4770631 83 + 17718866 CAGATTACAAATGACAGAGATTCATTACAGAATTATAGATACTGGAAGCACAGGATGTCATCTATCGCTTTGACAAGTGGAAA-------------
s caeRem4.Crem_Contig0   1677069 54 -  4500979 TGGATAACT--------------------GAagacaacattttgaaa----------------------ttggctaGATTAGATGCCTCTGACCAA
i caeRem4.Crem_Contig0  I 127 C 0
s caePb3.Scfld02_0       3029691 58 +  4147112 CGgtttacttttttca------catcCTAGATAGAAAAACGTTG-------------------------TTGTCTAACATAAATGCAAC-------
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     11135 72 -   201088 I

a score=39222.000000
s ce10.chrX              4770714 467 + 17718866  
s caeRem4.Crem_Contig0   1677123 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 686
s caeSp111.Scaffold409     11207 445 -   201088  
i caeSp111.Scaffold409  I 72 C 0
s caePb3.Scfld02_0       3029764 488 +  4147112  
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I

a score=727.000000
s ce10.chrX              4771181 17 + 17718866 TATCA----------------ATC-AAAACAACA
s caeSp111.Scaffold409     11652 33 -   201088 GATTAGAAATTCTGTTTTGATATC-AAAATAACA
i caeSp111.Scaffold409  C 0 I 161
s caePb3.Scfld02_0       3030252 24 +  4147112 TATCAgtaa----------atatcaaaaataaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeRem4.Crem_Contig0   1677578 686 -  4500979 I

a score=360.000000
s ce10.chrX              4771198 16 + 17718866 CAAACCCAGAGGCTGA
s caePb3.Scfld02_0       3030276 16 +  4147112 gaaacaTAAAGAATAA
i caePb3.Scfld02_0      C 0 I 463
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     11685 161 -   201088 I
e caeRem4.Crem_Contig0   1677578 686 -  4500979 I

a score=0.000000
s ce10.chrX              4771214 1305 + 17718866  
e caePb3.Scfld02_0       3030292  463 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10104915 1622 + 21540570 I
e caeSp111.Scaffold409     11685  161 -   201088 I
e caeRem4.Crem_Contig0   1677578  686 -  4500979 I

a score=91.000000
s ce10.chrX              4772519 1 + 17718866 T
s cb4.chrX              10106537 1 + 21540570 T
i cb4.chrX              I 1622 C 0
e caePb3.Scfld02_0       3030292 463 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e caeSp111.Scaffold409     11685 161 -   201088 I
e caeRem4.Crem_Contig0   1677578 686 -  4500979 I

a score=3667.000000
s ce10.chrX              4772520 44 + 17718866 AGAACATAGATCGGATCAGTTCAACTA---GAAATTGAGAAAT-CATA
s cb4.chrX              10106538 40 + 21540570 AGAacgtagatcaa---aattttattcccatgaacaagaaaat-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1678264 38 -  4500979 AGAACGTAGATCaa--caatttcattt---gaaacatgaaaat-----
i caeRem4.Crem_Contig0  I 686 C 0
s caeSp111.Scaffold409     11846 37 -   201088 AGAACGGAgatca----atttttattc---gaaacaagaatata----
i caeSp111.Scaffold409  I 161 C 0
e caePb3.Scfld02_0       3030292 463 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I

a score=43897.000000
s ce10.chrX              4772564 124 + 17718866 AATAAATTT--TGAGCCAGCGCAAAGAGTACGTTTACCTCCTAGTTTTCCGGTTTAA-CATCGGGGAGATCGCATGTCTC-ATGCTTTGAAATGTT-------T------GCTTCAACCCC-CGAGA-GTTCAAAGACGGAAA
s cb4.chrX              10106578 137 + 21540570 aataaattttccaACCTAGC--AAAAGGTACATGTACCACCCAGTTTTCCGGTCAAA-CGTCCAG--GATTGCATGTCTTGGAgcattgaaattttatatatgTATACATGAATCCGCCccgaaaaa-gttcaaagacGCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1678302 130 -  4500979 aataaattt--cgAACCAGC---AAAGGTAGGTATACCACCCAGTTTTCCGGTTAAA-CGTCTAG--GATCGCATGTCTC-ACTCTTTGAAATGCTATACATATGTATGGGA--CCGCCTT-ATAAA-GTTCAAAGacgtaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     11883 122 -   201088 aaaattttc--tgagcTAGC--ATGAGGTACGTATACCACCCAGCTTTCCGGTTAACTCGTCTAG--GATCGCATGTctc-at-----gaaatttcatatttgt------GAGTCCGCCTT---GAAGGttcaaacattgaaa
i caeSp111.Scaffold409  C 0 I 30
s caePb3.Scfld02_0       3030755 125 +  4147112 aataatttt--tgagctaTG--TAAAAGCGTGTATACCTCCCAGTTTTCCGGTTAAA-AGTCCAG--GATCGCATGTCTC-ATGCTTCGAAATTTTATATTTGT------GAGTCCGCCCC---GAA-GTTCAAAAACGTAAA
i caePb3.Scfld02_0      I 463 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I

a score=-5316.000000
s ce10.chrX              4772688 23 + 17718866 TGCCACCGTTTTCTGCT--AGCTCT--------
s cb4.chrX              10106715 17 + 21540570 -------ACT---------GGCTTTTTCGGGta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1678432 20 -  4500979 -------attttttgaa-gaattttttc-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3030880 21 +  4147112 ------AACTATCGGCATGAATTCTTT------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e caeSp111.Scaffold409     12005 30 -   201088 I

a score=3233.000000
s ce10.chrX              4772711 492 + 17718866  
s cb4.chrX              10106732 582 + 21540570  
i cb4.chrX              C 0 I 1392
s caeRem4.Crem_Contig0   1678452 626 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     12035 606 -   201088  
i caeSp111.Scaffold409  I 30 C 0
s caePb3.Scfld02_0       3030902 602 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I

a score=946.000000
s ce10.chrX              4773203 15 + 17718866 TTCGATATTTGCACG-----
s caeRem4.Crem_Contig0   1679079 20 -  4500979 ttcgaaaatgtcaaatttct
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     12641 15 -   201088 TTCAATGAGCTCACG-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3031504 15 +  4147112 ttcaatggGCTCACG-----
i caePb3.Scfld02_0      C 0 I 240
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10107314 1392 + 21540570 I

a score=-999.000000
s ce10.chrX              4773218 17 + 17718866 -----TTGACTGTATGCTTAGA
s caeRem4.Crem_Contig0   1679099 17 -  4500979 -----tTCACCGGAAGATCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     12656 16 -   201088 TTCCATTATGCGTGGG------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3031519 240 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10107314 1392 + 21540570 I

a score=-4923.000000
s ce10.chrX              4773235 88 + 17718866 AACAA-----ATGACTTTTTG-GTTCTAAAACTCAGAAAATTACTCCTCTTCTAGTTAGAAAGCCCTTTTCGTGAAACAAGAAACCTTAACACT
s cb4.chrX              10108706 69 + 21540570 aacaa-----agaattttttatttattaaaaattcgtGCAAAATTCCTC--------AAAA------------GGCACAGGAAATCTTAACACT
i cb4.chrX              I 1392 C 0
s caeRem4.Crem_Contig0   1679116 60 -  4500979 -ACAATTACTATGACTTTTTGtgtaataaaaaataat--------------------agaa------------gaaaaatgaaggattAATAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     12672 48 -   201088 --------ATGTGAC-TCAAATGCAGTAAGGA-------------------------AGTA------------TTAACAGGAAATCATGGCATT
i caeSp111.Scaffold409  C 0 I 59
e caePb3.Scfld02_0       3031519 240 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I

a score=-4059.000000
s ce10.chrX              4773323 79 + 17718866 ATGGGGCTTATTTATAATCTTCTAATTTTGCTGCCATGTTTTCT------TTGTGCCAACTGCGTTTTCCT---GTTACGTATTATTT
s cb4.chrX              10108775 87 + 21540570 G-GTGGCTTATTTATAATCTTCTAATTTTCTCggccttgtttttttcttatttttcacacCCCGGTTTTCTTTGGTAAGACGTTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1679176 18 -  4500979 ----GAAACATTTGTAA---------------------------------------------------------GCAAA---------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3031519 240 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e caeSp111.Scaffold409     12720 59 -   201088 I

a score=324.000000
s ce10.chrX              4773402 13 + 17718866 ---CTATTTTTTCATG
s cb4.chrX              10108862 13 + 21540570 CTCCTATTTCTTG---
i cb4.chrX              C 0 I 26
s caePb3.Scfld02_0       3031759 11 +  4147112 ---ctatttattca--
i caePb3.Scfld02_0      I 240 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e caeSp111.Scaffold409     12720 59 -   201088 I
e caeRem4.Crem_Contig0   1679194  0 -  4500979 C

a score=-1662.000000
s ce10.chrX              4773415 20 + 17718866 ------CATCTGGATTAGGCAATTTC
s caeRem4.Crem_Contig0   1679194 19 -  4500979 ACCAGAAAA------GGGAAGATCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3031770 20 +  4147112 ------aaatttgatgcaaaaatttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108875 26 + 21540570 I
e caeSp111.Scaffold409     12720 59 -   201088 I

a score=-1128.000000
s ce10.chrX              4773435 10 + 17718866 ---AAAAGCATCA
s caeRem4.Crem_Contig0   1679213 10 -  4500979 CGAAGCAACA---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     12779  7 -   201088 ---aaaagaa---
i caeSp111.Scaffold409  I 59 C 0
s caePb3.Scfld02_0       3031790  8 +  4147112 --aaacaggA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108875 26 + 21540570 I

a score=-3653.000000
s ce10.chrX              4773445 33 + 17718866 ------------------GCTGCCAACGAATTTTAGCCAAATAATTAAGAA-
s cb4.chrX              10108901 33 + 21540570 ------------------GTTAAAAATGAGTATTAGCcggatatttgaaaa-
i cb4.chrX              I 26 I 101
s caeRem4.Crem_Contig0   1679224 33 -  4500979 ------------------GATGAGATTTGATCCAAGTCAAAACATTAATAA-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     12786 46 -   201088 gatccCAACGAA------GATGAGATTTGATCCAAGTCAAAAACATtaataa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3031798 52 +  4147112 AATCTTAACAACATTTCTAATATGGCTTATTTGTAATCttctaatttccaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I

a score=-4942.000000
s ce10.chrX              4773478 93 + 17718866 GACATACTAAACCAACCGTAATTTTGTTACTGCTTCTTGAA---------AACTTAAA-TTTTTAATACATATATAAAAATCTAGATACTAAGGATGATTTTT--------------
s caeRem4.Crem_Contig0   1679257 79 -  4500979 -----------TTCA------------------TTTCTGAGCCACAGAAAAACAAAGACTTTTCTatttat---------tcagaattagatGCAAAACATTCAAACAGGAAATCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     12832 66 -   201088 -----------ttcat-----------------ttcttgGGTCAACACAGAACAAAGACTTTCTTATTTAT---------CCAAAATTTCGATgcagattttt--------------
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3031850 62 +  4147112 -----------ttcatcgtggtcttgttg----tttttggg------------------ttttctattcac--------accaaaattttttattaaattttt--------------
i caePb3.Scfld02_0      C 0 I 52
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108934 101 + 21540570 I

a score=-992.000000
s ce10.chrX              4773571 61 + 17718866 ----------------AAAATCAATTAATTGTTTGTTAGACTGACTAAATGGCATAATAAATCGTTTCAAAAATTGG
s caeRem4.Crem_Contig0   1679336 49 -  4500979 ----------------GACACCACTGGCTTATTTGTAATCTT--GTAATTTTCGCTTTgcatcttgt----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     12899 52 -   201088 cgaaacaggaAATCTTGACACTACTGGCTTATTTGTAATCTT--ctaatttcca-----------------------
i caeSp111.Scaffold409  I 1 C 0
e caePb3.Scfld02_0       3031912 52 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108934 101 + 21540570 I

a score=-9351.000000
s ce10.chrX              4773632 99 + 17718866 TTGAATTTACTGGATGCCGGCCGAAAATATGTTGTGATGTTTTTAATTAGAACATATGCGTGATATAATT-TTTTCTATTTCAACATTA-TAGGTGTTTGA
s caeRem4.Crem_Contig0   1679385 52 -  4500979 -------------------------------------ttttttcacgcGTTCGGTGTTCTTGctatgaatattttttgtctcTACGTAA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     12951 80 -   201088 tttcattc--------gcggt--------t-ttttgttgttttttcacaCTGCATATTCTCGTTATGACT-TTCTCTG---CTACgtaatttcatattttt
i caeSp111.Scaffold409  C 0 I 13
s caePb3.Scfld02_0       3031964 80 +  4147112 TTGAATTCA-------ACGAT-----ATAT-ATGTGTTGTTATCATAAAAAACTTAATTT--GCAtaagt-ttatttg-----aaaacaatccaTGTTCGA
i caePb3.Scfld02_0      I 52 I 154
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108934 101 + 21540570 I

a score=-9459.000000
s ce10.chrX              4773731 203 + 17718866 TTTTAGAAATACTATATAAAAAGTCTACATTTTTGGAATTTGGGCAGTTTACCAATAATTAGACCGAAAATGTTGAAAAATGCTTTCTAA---AAATTGGGGTGTTATATTATAATATTTGGTCATGTTAAACTAATACAAATTAGTGGATTTAAACCAAATCCCCACTGACCTTCAATCAAGGTTTGCCCACATCCTGCTTTAAG-------
s caeRem4.Crem_Contig0   1679437 135 -  4500979 -TTT-----CACcatat-----ttttccgtttttgatgTCAGGG-----GATGGGAAATTGggt---aaatgtgaaaaattct----------gaatttcg--gtTAGACT------------------------------TTTAGGATATCAA--------------CAGTTTT---TCCTCATTGGATCATAAAATATTTACAATCTCCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     13044 147 -   201088 ------------------------------ttttggtaCCAGAGAAA--GACGGAAATGTGGATTG-AAATAAggcaattttttgaataatggaAGTTGTG--Ggtaaattaattaattta------------taatttaattcgaaaaatcaaaataaag-----atCAACTTT---TCAAAGTCTTCTCATAGAACGCTT-----------
i caeSp111.Scaffold409  I 13 C 0
e caePb3.Scfld02_0       3032044 154 +  4147112 I
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108934 101 + 21540570 I

a score=-14745.000000
s ce10.chrX              4773934 130 + 17718866 AAAAATACCATATTAGACAAAGTGAGCTGTCACAGTCAATGGGAACAACAAAAACGCTAACAAGATT-----TTTTATA-GATCCTGTTCAAGTTTTAGCGTTCAGAAAACTCAATTGAAACCTGTATGCAGCTTC
s caeRem4.Crem_Contig0   1679572 102 -  4500979 AAAAGTTc--tattcaa-aagttcaatttgcttattcaattg----aaaaaaagattccgAGTAATCTGGCATTGAATGAAATCGAATGAAAG-----------------------CCAAACTCCCATG----TTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     13191  54 -   201088 -----------------------------------------------------------ACGTAATC---CATTTTGTG-AAACCAATAAAAGTtata---------------aatcaatttttccaaa----ttg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3032198  70 +  4147112 -aaa-------attgaa-aaact-------------------------agacGAAGTTAACGAGAAC---CATGATAtg-aatcaaataaaa------------------------tgaattcccgatg----ttc
i caePb3.Scfld02_0      I 154 C 0
e caeJap4.Scaffold17934   163403 2637 +   591668 I
e cb4.chrX              10108934 101 + 21540570 I

a score=402.000000
s ce10.chrX              4774064 4 + 17718866 -AAAG
s caeRem4.Crem_Contig0   1679674 3 -  4500979 -AGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     13245 3 -   201088 -aaA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3032268 3 +  4147112 -aaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   166040 4 +   591668 aaaa-
i caeJap4.Scaffold17934 I 2637 C 0
e cb4.chrX              10108934 101 + 21540570 I

a score=123850.000000
s ce10.chrX              4774068 167 + 17718866 AAAAATTGCAC---TTTTCGATGAAAAAT------TGATCAGTAATAGTGGAGT--ATTAAAAA----ATGGTGCCTCCC-GTATGC-AAAACTTTGCTCAT----GATGGATTGGGTTGAATAGTCATGAAAGGATATGTCAAAT--GTTGAATTAC-----AACGCAATAACGAATTGACATCTCACAACCCC
s cb4.chrX              10109035 187 + 21540570 aAAAGTTGCActctttttcaattgaaaac-tt--ttgatcaGCAATAGCGGGATAGATAGAAAACGCGCTGGTGTCTACCAAAATGCAAAAACGTTGCTCATGGACGATGGATCGACTTGAGTGGGCATGAAAGGATATGTCAAATCGTTTGAATTAC-----AACGAAATAACGAACTGACATCTCACAATTCC
i cb4.chrX              I 101 I 61
s caeRem4.Crem_Contig0   1679677 169 -  4500979 ATATATTGCAC---TTTTCcatgagaaac-tt--ttgatcaGCAATAGTGGAAT--ATGGGAAA-----TGGTGTCTACC-AAATGC-AAAACTTTGCTCAT----GATGGATCGGCTTGAATGGTTATGAAAAGATATGTCAAACA--TTGAATTAC-----AACGCAATAACGAATTGACATATCACAATCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     13248 174 -   201088 GAGTATTGCAC---TTTTCCatagaaaacatt--ttgatcAGTAATAGTGAAAT--GTTGAAAG-----CGGTGTCTATC-GAATGC-AAAACTTTGCTCAT----GATGGATCGGCTCGAATGGTTATGAAAAGCCATGtcaaaatgtttgaattACAA---AATGCAATAACGAATTGACATCTCACAATCTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3032271 171 +  4147112 aaatattgcac---ttttttcatggaaac-tt--TTGATCAGTAATAGTGGAAT--GTGGAAAA-----TGGTGTCTACG-AAATGC-AAAACTTTGCTCAT----GATGGATCGGCTCGAATGGTTATGAAAGGCCATGTCAAAC--GTTGAATTACAA---AACGCAATAACGAATTGACATCTCACAATCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   166044 177 +   591668 aataaatgctc---tttttattgaaaaag-ctCACTAAAAAGGAATATCGCAAG--AAGCGAAA-----TGGTGTctata-aaatgcaaaaaccaAGCTTTT----GATGGATCGGCTCGAATGGTTATGAAAAGACATGTCAAAT--GTTGAATTGAAATTCAACGAAATAACGAATCGACATCTCATAATCCA
i caeJap4.Scaffold17934 C 0 C 0

a score=160.000000
s ce10.chrX              4774235 3 + 17718866 CAC
s caeJap4.Scaffold17934   166221 3 +   591668 TAC
i caeJap4.Scaffold17934 C 0 I 1278
e caePb3.Scfld02_0       3032442 0 +  4147112 C
e cb4.chrX              10109222 61 + 21540570 I
e caeSp111.Scaffold409     13422 0 -   201088 C
e caeRem4.Crem_Contig0   1679846 0 -  4500979 C

a score=4826.000000
s ce10.chrX              4774238 52 + 17718866 TAGAGTGGGCTTCATAGAAGAGCAG-AAGTTTG--ATGGTCCATGCTCCACG---------------------AGT-----
s caeRem4.Crem_Contig0   1679846 66 -  4500979 -TGAGGAG--TTTATGGAAGAGCAC-AAGTTTTTGGTGGcctacgttttttt--------ttggatgaag---agaacaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     13422 73 -   201088 -TGAGGCGACTTTATAGAAGAGAGC-AAATTTAT-GTGGCCTacgcttttttctctttttttaaatgatgTCGAGA-----
i caeSp111.Scaffold409  C 0 I 10
s caePb3.Scfld02_0       3032442 53 +  4147112 -CGGGGCGACTTTATGGAAGAGCACGAAGTTTTC-GTGGCCTACGCCTTTTT---------------------GGT-----
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109222 61 + 21540570 I

a score=54044.000000
s ce10.chrX              4774290 393 + 17718866  
s cb4.chrX              10109283 418 + 21540570  
i cb4.chrX              I 61 I 259
s caeRem4.Crem_Contig0   1679912 439 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 226
s caeSp111.Scaffold409     13505 416 -   201088  
i caeSp111.Scaffold409  I 10 I 420
s caePb3.Scfld02_0       3032505 431 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17934   166224 1278 +   591668 I

a score=100.000000
s ce10.chrX              4774683 1 + 17718866 G
s caePb3.Scfld02_0       3032936 1 +  4147112 G
i caePb3.Scfld02_0      C 0 I 1842
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109701 259 + 21540570 I
e caeSp111.Scaffold409     13921 420 -   201088 I
e caeRem4.Crem_Contig0   1680351 226 -  4500979 I

a score=0.000000
s ce10.chrX              4774684 1184 + 17718866  
e caePb3.Scfld02_0       3032937 1842 +  4147112 I
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109701  259 + 21540570 I
e caeSp111.Scaffold409     13921  420 -   201088 I
e caeRem4.Crem_Contig0   1680351  226 -  4500979 I

a score=1210.000000
s ce10.chrX              4775868 40 + 17718866 GAAGTGAAAATAGAGTAAAATTTTCACGAATTCACGTTAG
s caePb3.Scfld02_0       3034779 40 +  4147112 GATGAGGAAgccaagaaaaaagtggaaaaattcACGTTAG
i caePb3.Scfld02_0      I 1842 C 0
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109701 259 + 21540570 I
e caeSp111.Scaffold409     13921 420 -   201088 I
e caeRem4.Crem_Contig0   1680351 226 -  4500979 I

a score=4.000000
s ce10.chrX              4775908 26 + 17718866 AAAAAAAGTGCGGAGGGAGTGAAAAG
s caeSp111.Scaffold409     14341 23 -   201088 aggaaaagt---gaGGAATTTCGCGT
i caeSp111.Scaffold409  I 420 C 0
e caePb3.Scfld02_0       3034819  0 +  4147112 C
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109701 259 + 21540570 I
e caeRem4.Crem_Contig0   1680351 226 -  4500979 I

a score=-614.000000
s ce10.chrX              4775934 38 + 17718866 TGA-------------------AGTGT--GCAAATTCTCCAAAAAACATTTGCTGTTTA
s caeRem4.Crem_Contig0   1680577 53 -  4500979 TGAAGTGTCAAAATCCCGCGACAAAGT--AGAAGTTCCTTGAAATGTT----CTGTTTA
i caeRem4.Crem_Contig0  I 226 C 0
s caeSp111.Scaffold409     14364 35 -   201088 TGA-------------------AAAGTAAGAAAATTCGTTGGAGTATG-----TGTTTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3034819 26 +  4147112 -----------------------AAGT--GAAAATTCTACGTAGC--------TGTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   166224 1278 +   591668 I
e cb4.chrX              10109701 259 + 21540570 I

a score=17822.000000
s ce10.chrX              4775972 65 + 17718866 CTAATTGAGAGCGGAGAAGTGGAAAT-----CCTAA-G---AAACCTCCCATTTTTGGACTTTGAAAAAATCAG
s cb4.chrX              10109960 63 + 21540570 CTGATTAAGAG------AGTAGGAAAGATTTCAAGA-ACCGAAACCT----TTtccagaattcaagaaaatcct
i cb4.chrX              I 259 C 0
s caeRem4.Crem_Contig0   1680630 62 -  4500979 CTAATTGAGAGCAAAGAagtggaaaaa----caaga-a---aaccct----tttttgaacttcaagAAAATCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     14399 62 -   201088 CTAATTGAAAGCGGAGAAGTGGAAAA-----CCTGAGA---AAACCT----TTTCCGAACTCTAagaaaatctg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3034845 51 +  4147112 CTAATTGAGAgcg----------aaa-----cctga-a---aaactc----CATGCGGACTTCTAGAAAATCtg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   166224 1278 +   591668 I

a score=78091.000000
s ce10.chrX              4776037 218 + 17718866 TGTTTT------------TTCTC-ATATA---------TTCTTCCGAACCTGAACCAAATTGAATTT-G-----GAAC-------GAGTAATGTGTAGGAGCA---GCAAAGCAGTAAAAAG------AA---TACACACG-----ACAGGACGTGTGAAACAAAAGACAAACATCCGG------AGTCGGGTTCCCGGAAGGCG--TCAATGAGA------------------------------------------AGATCA---CA--------------------AA-CTGG-----------GAGTGAACGATCAGAATAAGGAATAACCGAGGG--ATAGCCATGCATTC----A
s cb4.chrX              10110023 322 + 21540570 TCTTAC---TACGtttttttCGC-ATCCTGAGTTGCCTTCTTTAccaatttgaaagaaattgaatttgg-----aaCC-------AAGAAATGTGTGGGAGAG---AGCAGTTTGGGAGAAACCTAACCC---TACGGATG-----TGAGAACGTGTGAAACAAGTGACAAACATCCGG--TTAcattctaaattccaaaaggCG--TCAATGGAATAGAACACAAAAAGCGTAAGActcaaaaagagagaaagaagaaggtcA-TCAA-TGTATCG---GGAGG--ACAA-TCGACGATCTTGGGTGAGCCAATGATCAGAATATGGAATGACCGAGGGAAAAAGCTatgcattcaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1680692 290 -  4500979 TGTTTT---TTCGTCTGTTTCTCTATTCTG--------TTTCTTCCGACCTAAGCTAAATTAAATT--G-----GAAC-------GAGAAATGCGTTGAAGCC---ATAAGAAAATGAGATA------CC---GACAAAT--------AGAACGTGTGAAACAAGTGACAAACATCcgg--ttttgttttgatttctggaaaacg--tcgtttaaa---aaaacaaaacggg---------AGAAAAGAAAGGGCAGGAGGTCA-T-CAATGTTTCG-TCGAAGGACACAA-TCGACGATCTTGGGTGAGCAAACGATCAGAATAAGGAATAACCGAGGG--AAAGCTATgcattc----a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     14461 279 -   201088 ttttttctacccctctcattctc-attc----------tgTTTCCGAACCCAAACAGAATTGAATTT-G-----GAAC-------AAGAAATGCGTATGAGCC-----------GTAAGACA------CC---GGCAAAC--------AGAACGTgtgaaacaagaaacaaaCATTCTGTTCCTAATTCAGGATTCCGGAAGGcg--tcaatgaaa---aaagaa----------------gaagcggaaaatggagaaggtCA-T-CaatgtttcgaaagaaaGACACAA-TCGACGATCTTGGGTGTGCGAACGATCAGAATACAAAATAACCGAGGG--AAAGCTTTGCATTc----a
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3034896 271 +  4147112 tgtttt----tcttcgttttctc-attct---------ttttttccaacctagacaaaattcaattt-g-----gaactaaaagaaaaaaatgtgtaggAGCT-----------GAATGAAA------ACCGGGGGGAAC--------AGAACGTGTGAAACAAGTGACAAACATCCGG--CCTCATTCGGAATTCCGGAAGGCG--tcaatggaa---a--------------------------tgaaaacgaagaaggtCATT-CAATGTTTCG-----AAGACACAATTCGACGATCTTGGGTGTGCAAACGATCAGAATAAGGAATAACCGAGGG--AAAGCTATGCATTC----a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   167502 249 +   591668 -------TATGCTTTCTTTTCTC---------------TTACTGAAAACCTAAACTACATTCGATTT-GGATGCGAAC-------GAGTAAtgcggaggaggaggaggaggagaagaagaag------ac---ggcgAGAGCAGGAAGAAAACGTGTGAAACAACCGA-AAACATCCGG--TCTCATTGCGAATTCCAAAAGACGGCTCCATATAA---A--------------------------------------AGGACAAT-CA-TTCATCG---TGAAGACAGCA-CCAG-----------------ACGATCGGAATACTAAATAACCGAGGG--AAAGTCATGCATTT----A
i caeJap4.Scaffold17934 I 1278 I 481

a score=5678.000000
s ce10.chrX              4776255 79 + 17718866 ACTCGTGTCCTTTC-----GCCGTTTCCCTCTCAATCGTC--------TGTGTGCCCT-----TTAGTTTCGGATGTCGTCCCCACG---TTTTGTTTCA
s cb4.chrX              10110345 67 + 21540570 a-----aaacttttgaggGGC--TTTT----CAATTCATC--------TGTACCACTC-------AGTTTCAAAT---GT-CCATCC---CTCTGTCTCA
i cb4.chrX              C 0 I 653
s caeRem4.Crem_Contig0   1680982 74 -  4500979 a-----aaactttt-----tc--ttttattccaaAACGTC--------GATGTCCCCCGCCA--TAGTTTCGAATGTCGt-ctcact---ttttgtttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     14740 83 -   201088 t-----gacttttt-----tc--tttcattcca----ttcaaaaaaagtatgtACTCTGTCTTTTAGTTTCGGATGTCAT-CCcacgtttttttgtttca
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035167 69 +  4147112 a-----gacttttt-----tc--ttt--tttca----ttc--------tgtatCCTCC-TCCTTTAGTTTCGGATGTCGT-Ctcaag---ttttgtttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I

a score=-20605.000000
s ce10.chrX              4776334 177 + 17718866 --------------GTAAT---------AATATGCGCAAACGATATGCATTCATTATCCGCTACCACGCAGAAACTTTGACGAGGAAGAAGAGTCGAATACACATACACATATTAGTGAGAAAAACCTCT--------------------------TCACAAATCTACATTTTTGAATGTCATTTTATTCAA------AAATTTTTAGGTTTAGTAAAAGTATCAAATAAAA
s caeRem4.Crem_Contig0   1681056 206 -  4500979 gtgaGACTCTccaagtgatttttgagaaaatatgcgAAAACGATATGCATTCATTATT--GTGTCac-taggaaaatcaaaaggGGTTGAGAAGTGGGAACA---------ACCCGTGAGAAAAAGACAAGACGAACGGAAATTTAAATCGGATTTTTTCAGG---ACGTTTCTAGAAATCCTTGTGAAGAAGTGGtgtactttttttg----------ttttgaacaaaa-
i caeRem4.Crem_Contig0  C 0 I 65
s caeSp111.Scaffold409     14823  60 -   201088 gtgaGACTAACcaagtgatttttgagaatagttg-----------------------------------------------------------------------------------------aaaattcattgtG-----------------------------------------------------------------------------------GTTTGAGGTCGGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035236 164 +  4147112 atgagACTTGCcaagtgatttttgagaaaagatgCGAAAACGATATGCAT--------------------------TCATTAGAGTTTGAGGTCGGataac---------------tgaagaaaaaatctgacgtgagagaaaaaaaaaca-----tgacaaa---acGT-----GAATTAGGTGGcaaaaa------taacttttccg--------aaatttgaacTTGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I

a score=-3052.000000
s ce10.chrX              4776511 62 + 17718866 TCCGTAAAAGTGAAACT----TGATACAACAAAACTGTATGCA---AAAGTTTTGAAATTAGGTACACG
s caeSp111.Scaffold409     14883 65 -   201088 TAATCGAAAATATTACTGACGTgagactgaaaaatt-caggaaaatgaaaaatacggact---tgaaat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035400 51 +  4147112 GCTTTGAGAACGATATT---TTGGAACAGAA---------------GAAGATTACAAACCgagtgaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I
e caeRem4.Crem_Contig0   1681262 65 -  4500979 I

a score=326.000000
s ce10.chrX              4776573 18 + 17718866 CACCTTTCATGGACATTT
s caeRem4.Crem_Contig0   1681327 18 -  4500979 CATCTTATCCGGTCATTC
i caeRem4.Crem_Contig0  I 65 C 0
s caeSp111.Scaffold409     14948 18 -   201088 cattttataAGAACATTT
i caeSp111.Scaffold409  C 0 I 207
s caePb3.Scfld02_0       3035451 12 +  4147112 aac------aaaatatgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I

a score=-6136.000000
s ce10.chrX              4776591 161 + 17718866 ---TACAAAAAACATTGAAATCTGGAAGCGAGCTAGTACCGACATAGGACGCGCTGCACTATAAAGACACAATGTTTTGTCACGCCCACTGCAGGGTAAA----TTGTGATGCGAAACTTGATAGATGTCGGGCCATAATACCAACCTTTCCTTCAGATTTTTAGGTA-------
s caeRem4.Crem_Contig0   1681345  74 -  4500979 TTTatcgaaaaatatcaaaatccaaaag------------------gagaaaaatgcATTGCgaagtt---------------------------------------------------------atttt--------------------------tattttgaagtaCTTGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3035463 112 +  4147112 -tcaaacaaaaatagaaatactTGAATA------------------GGAAGAACTACTTGGAAAAGATTGAAGGTT-----------ATTTCCGAGaagacactttttgattcgaaaaaaaaaagatttt--------------------------gattttcaagtg-------
i caePb3.Scfld02_0      C 0 I 71
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I
e caeSp111.Scaffold409     14966 207 -   201088 I

a score=178.000000
s ce10.chrX              4776752 66 + 17718866 TACTCAGATAGGTTTAAGCCCGAGTTTTAGAAAATTTCAAATTATAGTATGTGGGCGTT----TTAGAAT
s caeRem4.Crem_Contig0   1681419 60 -  4500979 -AGTGAGAAAGGTCGAGAATAGTATTTCGGAGAGTATTGAA---------GTGGGAGTAAAGATCACAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3035575 71 +  4147112 I
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I
e caeSp111.Scaffold409     14966 207 -   201088 I

a score=-3118.000000
s ce10.chrX              4776818 60 + 17718866 GATT--CAGAGCTATTAGGTTTGACTGTACATACAAGATTTC-----AACATTGTTAAGGACGTATT------
s caeRem4.Crem_Contig0   1681479 54 -  4500979 ------GAAATCTGTCCGGTCTA-------AGACACCGCCACAATCAAACAGTGAGGAAGAAATATT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15173 63 -   201088 GATTCGGAAAATTCTCAAGT----------GGGCACGAAGTTCAACAAATGTCAAGATAGGTATGTACCGAAG
i caeSp111.Scaffold409  I 207 C 0
e caePb3.Scfld02_0       3035575 71 +  4147112 I
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I

a score=-9481.000000
s ce10.chrX              4776878 137 + 17718866 ---------------------------TCACTTTGTTTGGCTTATTCAAAAAACTTAATTTTCCAGGCTTAATTCTAATTTTCTTTAATTTTCAAAACTTGAACTTTGATCGAAAATGTCATAAAAAGGAAACTATACACTCCTA----TCAAGTTAAACTGCATTCG
s caeRem4.Crem_Contig0   1681533 123 -  4500979 cctaat------------------ttcttattttctactACTTATCAAATGT---------------ATGATTCACCACGTC-------TTCCTCACTTAGA---TTAATCTaaaaaaaGAT-ACCAACTACTTAGACTTCCATT-CGGTCAAATTTCACAGAATCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15236 145 -   201088 --TAACATAGTTGCCAATGAGGAATAAATTCTTTCCATATCTTATCATATTAGTTTCCTCATAATGAGTCAGTTTTGgaact-------tttctttcctcga-----aatctaaaaatg---------ggGCCTAGACTTTCGTTTCGGTCAAATTCCACGGAATGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035646 117 +  4147112 ------------------------ttattttttt-----tgttatcatatCA----------AGCAGGTGAATCATCAACCTACATA--TTTCTCAACATGG-----AATCCAGGAATGGA-----ATGAACCCAGACTTTTCTTCTGGTCAGGTTTCGCTGAATATA
i caePb3.Scfld02_0      I 71 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10110412 653 + 21540570 I

a score=74495.000000
s ce10.chrX              4777015 222 + 17718866 AAATCAAAACGCGACACA----GATCGTGAATTTTTCAAAGTTTCCTTTTTCAGGAATTTGTGAAGAGTATGATGTGGATGACTGG-CAAGAA------ATGCGTTTTTAGC----ATCGAAAACTGCA---TAAAACGGACAC------------AAACACG----AG-AACTCGAGAATTGAGACGATTTCTAAATGGGTACTAGAAGCGAATTTGAGAGGTATTTTTGTGT---TGAAAAACGAGATATGTTATA-----GG
s cb4.chrX              10111065 245 + 21540570 aaatcaaaacgcAAC-TGGGATGatcatgaatttttcaaagttttgc-cttcgaacatttttgagtAGTATGATGTCGGCGAA----AAAGAAAGGAACATGCATGTTTTTC----AAGGAATACTGCAAACGAAAAAAGGCACAAGATTGCTAT-AAACATGAGCTAGTTTCTCTGAAGATGAGACGA--TCTGAATGGGTCCTATGAGAGAATACGAGCCGTATTTCAACACATGTAAAACGAGAAAGATGCTCAT-------
i cb4.chrX              I 653 C 0
s caeRem4.Crem_Contig0   1681656 229 -  4500979 GAATCAAAACGCGAC-TG----GATCgtgaatttttcagagtttt---ctttgaacatttttgagtagTATGATGTCGACAAG----AAGGAA------ATGTAtgtcttctagaaaaaaaaaactgca---gaaaaaaggcgaaagattgctaa-aaaCATG-GTTA--CACGCTGAAAATGAGACGA--TTCGAATGGGTCCTAGGAGAGAATATGAGActtttttccgt-----tgaaaattgagatgttCTTATATG----
i caeRem4.Crem_Contig0  C 0 I 59
s caeSp111.Scaffold409     15381 231 -   201088 GAATCAAAACGCGAC-TG----GatcgtgaatttttcaaagttttcttttctaaacatttttgagtGGTATGATGTTGGTAGCGGGAGGGGAA------ATATatg-ttctc--aaaaaagaaactgca---gaaaaaaggcgaaagattgctat-aagcaag-gcaaa-aagtctgaaaatgagacgA--TCTGAATGGGTCCTAAGAGAGAATTTGatgcttttttc-aa-----tgaaaaatgagatataCTTTT---C---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035763 232 +  4147112 GAATCAAAACGCGAC-Aa----gatcttgaatttttc--agtttttctttccaaacatttttgagtagaATGATGTTGGCATC----CAAGAA------ATATATGTTTCTT--aaaaaagaaactgcaagcagaaaaaggcgaaagattgctagaaaacatg-gtaaa-aacactgaaaatgagaCGA--TCTGAATGGGTCCTAAGAGAGAATATGATACTTTTTgagga-----tgaaaaatgagatatacTATT---CA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I

a score=-10790.000000
s ce10.chrX              4777237 62 + 17718866 AAGCGGGGGGGGGGGGGGGTAATAGAAGCATGGTTGTAACTTGCAATATAAGTTTGAGGGCT--------------------
s cb4.chrX              10111310 44 + 21540570 --------TTGCAAGTGGGTGGAGAGTAAGTTGTTGC----------------ATGGGCAGTAT----------AACT----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     15612 66 -   201088 --------TAGAGAGCGGGT---TCGAAAGTTGTcatacttttc----tttttttgatgaatat-tggagaaaaaaggaaac
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3035995 64 +  4147112 ----GCAGTCATGGAAGGGT---AAGAAAGTTTTCGTGTTATTC---------TTAATTAATATCTATGGaaaaaacg--at
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e caeRem4.Crem_Contig0   1681885 59 -  4500979 I

a score=3247.000000
s ce10.chrX              4777299 26 + 17718866 ATAAAAACCATAAA--AATATGAAATGT
s cb4.chrX              10111354 17 + 21540570 ---------ataaaacaacacaaaaa--
i cb4.chrX              C 0 I 82
s caeRem4.Crem_Contig0   1681944 26 -  4500979 ataaaaactataaaataatGCAATAA--
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold409     15678 22 -   201088 agaaaaacaataaa--aatggaaa----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036059 22 +  4147112 ataaaaacgataaa--aatgagaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I

a score=-14307.000000
s ce10.chrX              4777325 74 + 17718866 GCATCATTACTAGTAATGTTTAATGCTGTATTCCTATACCCAGTTCGTCATTCACCAA----CAAAAAA------------AAGAAGATC
s caeRem4.Crem_Contig0   1681970 68 -  4500979 -----CTTTCTCGT----CTTCCAACTCAATTTGTGTGGTGTGCCCATCTTTTGGCTA----TGATCTCTTATGAAAGCCA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15700 21 -   201088 ------------------------------------------------tataaggatactcttgattaa---------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036081 17 +  4147112 ------------------------------------------------ttcttGGAAG----TGAAATA---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I
e cb4.chrX              10111371 82 + 21540570 I

a score=-4807.000000
s ce10.chrX              4777399 79 + 17718866 GAATAACTTTC----AT------------TGAATAAAAACTTTTTTTTCGCTGCGCACCAACTTTGGTAGGAAGACAAATTTTTT----------GTGCAGGAGC
s cb4.chrX              10111453 90 + 21540570 gaaaaactttcatttttggatAGAAAGGATACATCAAA------------CTGGAAGACGgg---gggaaagaagaaaaaattttttctgtggCGGCGTAGGACT
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   1682038 77 -  4500979 GAATAACTTTCATGTGT------ATAAGATACatcaca--------ttttttgcatttcaac---GGAAAGAAAGGAAACATTT-----------GCGCAGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15721 52 -   201088 aaataactttc----tt------------tttgataaa--------------------taaG---GGAAAAGATAGACACC--------------ATGGAAGAAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036098 56 +  4147112 GAATAACTTTCATTGGT------------TACATCAAA--------------------TAtc---aagaaaagtaaaaact--------------cCGCCATAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   167751 481 +   591668 I

a score=174696.000000
s ce10.chrX              4777478 170 + 17718866 CATTTAATTATTCATATTATGTG---CTACAACTACACTTTTCTCGGTGAACGAAATTGGTATCGCGGCACGTGCTCGTCGTCCGTTCTCCACCAAATAGCACTCTCCAGAGAATCCGATCGCTTTCACAATTTCACCGGCTCGCAGTATGACTCCACTTGATGGATCTAAAA
s cb4.chrX              10111543 170 + 21540570 TATTTAATTATTCATATTATGTG---CTACAACTACACTTTTCTCGGTGAATGAAATTGGGATAGATGCTCTGGCTCTTCGTCCACTCTCCACCAGATAACATTCTCCCGAGAAGCCGATCGCTTTGACTATCTCACCGGCACGCAGTATGACTCCACTTGACGGGTCTGGAA
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1682115 170 -  4500979 CATTTAATTATTCATATTATGTG---CTATAACTACACTTTTCTCGGTGAACGAAATTGGGATAGAAGCTCTGACTCGTCGTCCGTTCTCTACCAAATAGCATTCTCCAGAGAATCCGATCGCTTTCACTATTTCACCGGCACGCAGTATGACTCCAGTTGATGGATCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15773 170 -   201088 CAGTCAATTATTCATATTCTGTG---CTACTACCACACTTTTTTCGGTGAAGGAAATTGGAATAGATGCTTTGACTCTTCGTCCGTTCTCCACCAGATAGCACTCTCCAGAGAAACCTATTGCCTTCACTATTTCACCGGCACGCAGTTGAATTCCACTTGATGGATCTAAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036154 170 +  4147112 CATTCAATTATTCATATTATGTG---CTACCACTACACTTTTCTCAGTGAAAGAAATTGGGATAGATGCTCTGACTCTCCGCCCGTTCTCCACCAAATAACACTCTCCAGAGAAACCAATTGCTTTTACTATCTCACCAGCACGCAGTTGGACTCCACTTGAGGGATCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   168232 173 +   591668 CAGTTAATTATTCATATTATGCGTGACGACAACTACACATTTCTCAGTGAACGACATTGGAATTGCTGCTCTTGCTCTTCGTCCATTCTCTACCAGATAGCACTCTCCAGAGAATCCGATCACTTTGACTATCTCACCGGCGCGTAACATTACGCCACTAGATGGATCTGAAA
i caeJap4.Scaffold17934 I 481 I 2

a score=-11075.000000
s ce10.chrX              4777648 39 + 17718866 ----AGTGCAAGT-------------CTTTTGTGTACATGTACTTC-----------------------------------ACACTTTAGC
s caeRem4.Crem_Contig0   1682285 56 -  4500979 ----AGTGCAAAT---------------------TGCAATTTCTCTTTGGTGTAATTGTTTGAAAGGCTTCGGAATTGAac----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15943 19 -   201088 ----AGGGCAA-----------------------TACAATTCCTTC---------------------------------------------
i caeSp111.Scaffold409  C 0 I 25
s caePb3.Scfld02_0       3036324 16 +  4147112 ----AGGGCga--------------------------atttcattc---------------------------------------------
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold17934   168407 46 +   591668 AATGAGAACAATTTAAGCATAAACCCCACTTCCATTCAATcccccc---------------------------------------------
i caeJap4.Scaffold17934 I 2 C 0
e cb4.chrX              10111713 35 + 21540570 I

a score=47132.000000
s ce10.chrX              4777687 180 + 17718866 CTTTTAATTAAATTTTTCGTCTGGATT-ACTTTTGAAA---AAAAAAATT---GAGCAAAAG-TCAAAGAAAAGGTT------TAAGTCTAATCCTCAAT-TAAATTAAATGT----------GTTACCTTGAAAATCAATGACGACGCTTCTCCGTTGAGGAAAATAATGCTTCCGTCCTTCACGAATGGCGTATTGCCGTTGG
s cb4.chrX              10111748 178 + 21540570 tttttaattgaaCTTTGATTA--AATT-TGGTTCGATTCGTGAAAAAGTCAACGGTCAGATT-GCAAATTGGTAGCT-TAGAAAGAGAGGAATTAATTG------------AA----------ACTACCTTGGAAATCAATGACGACACTCCTTCGTTGTGGGAAATAATGTTTCCGGCCTTCTCGGATAGCATATTGTCTTTGG
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1682341 169 -  4500979 --tttgattgaaattttgttc--aatt-tgttTCGATT-----GAAAGTC---------GCT-TTAAATAGGAtgc------aaaaaactaattaatCGTGTGTCTTAACTGG----------AATACCTTGAAAATCAATGACGACACTCCGTCTTTGTGGGAAATAATGCTTCCGTCCTTCACGAATTGCATATTGTCGGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     15987 167 -   201088 tttAGTTTTGTGAGCCAGTTCT-AATTAAGACTCAATT------ACAATC---------AAT-TCCAGCAGAAAGAG-------AAGCCTAAGCCTTT---TGTCTTAGCAC-----------AATACCTTGAAAGTCAATGACGACACTCCTCCGTTGTGGGAAATAATGCTTGCGACCTTCTCGAATAGCATATTGGCGAcga
i caeSp111.Scaffold409  I 25 C 0
s caePb3.Scfld02_0       3036370 177 +  4147112 TTGTAGATGATAAGCTCATTC--AATTAAAATTCGATT-----AAAAATC---------AATCTTCTACAAAAAGTGTCGGCGCGAAACTAAGCCTTTC--CGTCTTAGCACA----------AATACCTTGAAAGTCAATGACGACACTTCTTCGTTGgggaaaataatgttttcggCCTTCTCGGATAGCATATTGACGGTGA
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold17934   168453 174 +   591668 ccTCcaatt-taattttctgc--aattaaaatttgatg-----aaaaaag---------aaa-----agacaacGCT------GTCTGCTAATCCGTG---CATCTTAACTAACAAGTAAGATAATACCTTGAAAATCAACGACAATGCTTCTTCTTTGCGGCAAATGATGCTTTCGTCCTTCTCTAATTGTGTACTGACGTGGA
i caeJap4.Scaffold17934 C 0 I 125

a score=4836.000000
s ce10.chrX              4777867  80 + 17718866 AAGAAAACCTTGGGAGTGCTATTGG------TAGGTGACCGGGCACAAATACCGTTTATTCTGAAAAT-------------------------------GTTGAGTTTA-------TTCTGAAT-
s cb4.chrX              10111926  78 + 21540570 AATGTGGCCTTTGAAGTTCC---------GCTAGGCGATCTATCACAAATTGAGCtgactctgaaaat-------------------------------gaatcatCTT-------ATAATAAAT
i cb4.chrX              C 0 I 516
s caeRem4.Crem_Contig0   1682510  80 -  4500979 AATGAtacttttgaagtttcagtGGAAATACTCGGTGAACGATCACAAATTGAGTTCACTCTAAATAA-------------------------------AAA--------------AGGATGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     16154  80 -   201088 aatgatatttttggtGTACCAGTGGATATACTTGATGGTCTGTCACATATTGAATTTACtct-------------------------------------gaataattta-------ttcataaa-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036547 124 +  4147112 AAAGTTACTTTTGGATTAGCTGTAGACGTGCTCGGAGGACGATCACATATAGAATTCACTCTAAAATTAGGAAATTAACGTGGTTTgtgagtttgaaaagaaagatttgtataagtttcagaaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   168627 125 +   591668 I

a score=-8593.000000
s ce10.chrX              4777947 14 + 17718866 ------------------------------AACTTG------------------------------TGTCAAAA
s caeRem4.Crem_Contig0   1682590 18 -  4500979 ------------------AATTGAATGTGCAAATTA--------------------------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     16234 14 -   201088 a----------------------------caagttt--------------------------------tttaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3036671 71 +  4147112 aagttgagatatAGATTCAATTGA---TCCAATTTTGTCtccaaaaaaacctaaatttgtaatttttgttaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   168627 125 +   591668 I
e cb4.chrX              10112004 516 + 21540570 I

a score=546.000000
s ce10.chrX              4777961 1 + 17718866 A
s caeSp111.Scaffold409     16248 1 -   201088 a
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3036742 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   168752 1 +   591668 a
i caeJap4.Scaffold17934 I 125 C 0
e cb4.chrX              10112004 516 + 21540570 I
e caeRem4.Crem_Contig0   1682608 1 -  4500979 I

a score=84823.000000
s ce10.chrX              4777962 113 + 17718866 TT-----ACCTATTCGAAGAAGTACACGAGCTCGCCATGACACTTCGGTACAAATTTAACTGATAACCCAATCCGTTTTCGTGAACTCTTGCATATTCCAGGGAATCATTAGACTGAA--
s cb4.chrX              10112520 111 + 21540570 TT-----ACCGATTGGTTGAAATACAGGAACTAGCCATGACACTTCTATATAAGTTTAACTGGTAACCCAGCCCGTTTTCATGCACTCTCGCATATTCCAATGCATcgtttgactg----
i cb4.chrX              I 516 C 0
s caeRem4.Crem_Contig0   1682609 111 -  4500979 GT-----ACCTGTTAGATGATATACATGAACTTGCCATTACACTTCTATATAAATTTAGTTGATATCCTAACCCATTTTCATGGACTCTTGCATATTCCAACGCGTCATTTGActg----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     16252 111 -   201088 tc-----acCTGTTGGATGAAATGCATGAACTTGCCATAACACTTCTATACAGGTTCAGCTGGTAACCCAAACCGTTCTCATGAACACTCGCATACTCCAAAGAATCATTTGACTA----
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3036746 116 +  4147112 TCAACCAACCTGTTAGAAGAAATACACGAGCTTGCCATCACACTCCTGAACAAATTCAGCTGATATCCAAGACCGTTTTCATGAACCCTTGCATACTCCAATGCATCATTcgactg----
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   168753 113 +   591668 tT-----ACCTTGCGGATGAAATTTTAGTGTTTGCAACAACACTTCGATACAGGTTCAATTGATTGCCTAATCCATTTTCGTGAACTCTGGCATACTCCAATGATTCATTTgacta--aa
i caeJap4.Scaffold17934 C 0 C 0

a score=-2795.000000
s ce10.chrX              4778075 28 + 17718866 TGTAAAAGCTCATAGATTATTTATCACT--------------------
s cb4.chrX              10112631 40 + 21540570 ---aaaaaatc-----cTCGTTAAAAAACATAAGAGCTGCTTCTCACT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3036862 29 +  4147112 ---aaaatattgattattgtttgaaattcatt----------------
i caePb3.Scfld02_0      C 0 I 837
e caeJap4.Scaffold17934   168866  0 +   591668 C
e caeSp111.Scaffold409     16363  0 -   201088 C
e caeRem4.Crem_Contig0   1682720  0 -  4500979 C

a score=0.000000
s ce10.chrX              4778103 28 + 17718866 TTGGGATTATTGTCTTAACTTTTCAAAC
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e caeJap4.Scaffold17934   168866  0 +   591668 C
e cb4.chrX              10112671  0 + 21540570 C
e caeSp111.Scaffold409     16363  0 -   201088 C
e caeRem4.Crem_Contig0   1682720  0 -  4500979 C

a score=-1902.000000
s ce10.chrX              4778131 77 + 17718866 TTACTCAAAAAAATAATGGAA-GAAAATGTGAGAAATCGTGTGTAAAAAGCATAAGAACCAAGATATGGGCGGACCCT
s caeRem4.Crem_Contig0   1682720 46 -  4500979 -----caaacaaaaaatgtaa-gaATCTA--------------------------AATCCAAGATTGGCTCCAACCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     16363 30 -   201088 -----TAAAATAATAACGAaatgaaactg--------------------------ga---aaaa--------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e caeJap4.Scaffold17934   168866  0 +   591668 C
e cb4.chrX              10112671  0 + 21540570 C

a score=-49.000000
s ce10.chrX              4778208 43 + 17718866 TTTTTTAGAGCTTCCAGAATAATTTTCTAGTCCGATTCACTCT
s caeSp111.Scaffold409     16393 15 -   201088 ----------------------------agctTGACTCACTTT
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e caeJap4.Scaffold17934   168866  0 +   591668 C
e cb4.chrX              10112671  0 + 21540570 C
e caeRem4.Crem_Contig0   1682766  0 -  4500979 C

a score=0.000000
s ce10.chrX              4778251 116 + 17718866 TGAAATCATTAAAATGTTGCCGAAAATCACTTTTGGAGCAATTTTCCGCGCTGAATACTATTAAATAGATGTTATCTAGTCAAAACTTCCCCTCTACATCCACTTTTTTAGGTACA
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e caeJap4.Scaffold17934   168866   0 +   591668 C
e cb4.chrX              10112671   0 + 21540570 C
e caeSp111.Scaffold409     16408   0 -   201088 C
e caeRem4.Crem_Contig0   1682766   0 -  4500979 C

a score=56.000000
s ce10.chrX              4778367 35 + 17718866 CAAACATATTTTAAGACTTTCTTTTCCAGTTTAAT
s caeRem4.Crem_Contig0   1682766 10 -  4500979 CAAACAAATT-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     16408 10 -   201088 CAAACATATT-------------------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e caeJap4.Scaffold17934   168866  0 +   591668 C
e cb4.chrX              10112671  0 + 21540570 C

a score=-150.000000
s ce10.chrX              4778402 29 + 17718866 ATTATTCAAAAATAGAAAAGCTGAAACGC
s caeJap4.Scaffold17934   168866 26 +   591668 --atttcaaaattagcggttttgaaaac-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3036891 837 +  4147112 I
e cb4.chrX              10112671  0 + 21540570 C
e caeSp111.Scaffold409     16418  0 -   201088 C
e caeRem4.Crem_Contig0   1682776  0 -  4500979 C

a score=-644.000000
s ce10.chrX              4778431 16 + 17718866 ATTTCTTAACTTTACC
s caePb3.Scfld02_0       3037728 16 +  4147112 attcattcGCCTAACC
i caePb3.Scfld02_0      I 837 C 0
s caeJap4.Scaffold17934   168892 15 +   591668 aaatgtgCACCTACT-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10112671  0 + 21540570 C
e caeSp111.Scaffold409     16418  0 -   201088 C
e caeRem4.Crem_Contig0   1682776  0 -  4500979 C

a score=159384.000000
s ce10.chrX              4778447 228 + 17718866 TTTAAGCAAATAATTTGCTGGGAATTATTGTCTGCGATGTCTTTCTTCAACATTCGAATTGATTCAATAACATTTTGAATAACAGTCTTCCCATTATTCGGCCAATTAATCGCACTTGGGGCATAATTGTTGTCAACTATCATTGATTCAATATCTTGTTGGAATAAATTTACAGCAAATGGGAACGTGCAAGTTCGAAAATCGAATAAATTTACCTAGAA------------AAAAATA-------------------
s cb4.chrX              10112671 221 + 21540570 TTCAAACATATGATTTGTTGACAACttgtttctgatatctctttcTTGAACTTCTTTATTGACTCCATAACGTTCTGAATCACAGTTTTGCCATTGTTGGGCCAATTTATTGCACTTGGTAGATAGTTCTCGTCGATGATCATTGATTCAATGTCGTGTGCAAATAGATTCACAGCAAACGGAAAGGAGCATGTTCGGAAGTCGAACATATTCACCTGGA-------------A-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1682776 210 -  4500979 ------------ATCTGTTGACAACTAGTCTCtgatatctcttttttcaattttctaatcGACTCCATGACATTTTGAATAACAGTTTTCCCATTATTCGGCCAATTAATTGCACTTGGGAAATAATTCTCATCAATTATCATTGACTCAACATCTTGTGCAAAAATATTGACTGCAAAAGGAAAGGTGCACGTTCGAAAATCAAACATATTGACCTGAAT------------A-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     16418 216 -   201088 ------------ATCTGCTGGGAACTTGTTTCCGAAATatcattcttcaattttctgattgattCCATCACATTCTGTATCACAGTCTTCCCATTATTGGGCCAATTGACCGCACTCGGATAATAATTATCGTCTATTATCATCGACTCAATGTCTTGAGCGAAAATATTGATTGCAAATGGGAATGAGCACGTTCGGAAATCAAACATGTTTACCTGAAC------------GCAAAGA-------------------
i caeSp111.Scaffold409  C 0 I 26
s caePb3.Scfld02_0       3037744 228 +  4147112 TTCAAGCAAATAATCTGCTGAGAACTTGTTTCGCAAATCTCCTTCTTTAACTTTCTAATGGACTCCATCACATTTTGAATCACAGTTTTCCCATTGTTTGGCCAATTTATTGCACTTGGAAAATAATGTTCATCCACTATCATTGCCTCGATATCATGAGCAAAAAGATTCACAGcaaaaacaaatgaacatGTTCGGAAGTCAAACATattgacctgaaa------------ataaatc-------------------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   168907 259 +   591668 TTCAAACAAATAATTTGCTGAGAACtggtttctgaaatttctctCTTCAACTTTCCAATTGACTCCAATACGTTTTGAATTACTGTTTTTCCATTGTTCGGCCAATTTATTGAACTTGGAAAGTATCTATCGTCAATGATCATGCACTCGACATCCGTTGCAAAAAGATTCACCGCAAACGGAAACGAACAAGATCGATAATCAAAAAGGTTCACCTGGAACAACAATAAAGGACAAATGTTGGCCGGGAAAACTAATA
i caeJap4.Scaffold17934 C 0 C 0

a score=-13149.000000
s ce10.chrX              4778675  14 + 17718866 ------------------------------------------------------------------------------TGTTTTC-----------------TTTTAAA
s cb4.chrX              10112892  14 + 21540570 ------------------------------------------------------------------------------GAataaa-----------------ttctgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1682986  14 -  4500979 ------------------------------------------------------------------------------TGGTGAC-----------------Tattgaa
i caeRem4.Crem_Contig0  C 0 I 21
s caePb3.Scfld02_0       3037976  13 +  4147112 -------------------------------------------------------------------------------attcaa-----------------cttacAA
i caePb3.Scfld02_0      I 4 I 1
s caeJap4.Scaffold17934   169166 109 +   591668 TTAtcgattcgtgacgtagcgagacatcgtgtcaagttatgggtcagcaatcgccgggtctcgccacgattcagctcttggtgGCAAGAGAagacacaatttttttgaa
i caeJap4.Scaffold17934 C 0 I 33
e caeSp111.Scaffold409     16634  26 -   201088 I

a score=-4253.000000
s ce10.chrX              4778689 11 + 17718866 AAC----------CTTGCGCA-------
s cb4.chrX              10112906  1 + 21540570 --------------------a-------
i cb4.chrX              C 0 I 17
s caePb3.Scfld02_0       3037990  7 +  4147112 AAC--------------CAAA-------
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold17934   169308 28 +   591668 aacgtgtcgctacgtcacgaatccataa
i caeJap4.Scaffold17934 I 33 C 0
e caeSp111.Scaffold409     16634 26 -   201088 I
e caeRem4.Crem_Contig0   1683000 21 -  4500979 I

a score=91.000000
s ce10.chrX              4778700 1 + 17718866 T
s caeJap4.Scaffold17934   169336 1 +   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3037997 3 +  4147112 I
e cb4.chrX              10112907 17 + 21540570 I
e caeSp111.Scaffold409     16634 26 -   201088 I
e caeRem4.Crem_Contig0   1683000 21 -  4500979 I

a score=113984.000000
s ce10.chrX              4778701 216 + 17718866 CTTACTAATTCTCTTGAAACACGATTGCTGTTTCTCTCAATCATGAGCCTCAAATCATAGTGAATCTCAAACGCCTCCGTACAGTGTTTAATCATTTTTGGAGATTTGCTGTAATATTATTA--TTCAA-----TTCCTATACCTA--AAATTATAGTACCTTTCAGTCCAAACTTCATCATTTCGAGTTGCAATTTCGACGCTCTTCAATAACTCATGAACCTG
s cb4.chrX              10112924 215 + 21540570 CATACCAGTTCTCTAGAAACACAATTTGTGTTTCTTTCGATCATCAACCGCAAGTCATAGTGTATCTCAAAAGTATCTGTACAGTgtttgatcatttttggagttttgctgcaa-aatcgaaatttcaagatacaCTCAACAA-CG----AATATTTTACTTATCACTCCAATTGTCATTCGATCTTGTTGACAACTCTACATTTTTGAGCAACTCGTGAA----
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   1683021 221 -  4500979 CTCACCAGTTCCCTTGAAACATAATTGCTGTTTCTCTCAATCATCAGTCTCAAGTCATAATGAATCTCGAATGAGTCAGTGCAGTGTTTGatcatttttggagttttgctGAAATAATCTTGTTTTTAGCTGAATTTCATTAATCC----ATCAACTGACTTTTCGGTCCAATCCTCACCGGTTCTTGTGGCAACTTCTACAGTTTTTAATAATTCATGAACCTG
i caeRem4.Crem_Contig0  I 21 I 6
s caeSp111.Scaffold409     16660 218 -   201088 CTCACTAATTCTCTTGATACATAATTACTGTTTCTCTCAATCATCAATCTCAAATCataatgaatttcaaatgcATCGGTGCAgtgttttatcatttttggagttttgcTGAATTAAAGGGAAGTTCAA-TGCGGTTTAATACTTG------GAACTCACTGATCCGTCCAATTTTCACCGTTTCGAGTTGCTATTTCCACACTTTTCAGTAACTCATGgacctg
i caeSp111.Scaffold409  I 26 I 10
s caePb3.Scfld02_0       3038000 217 +  4147112 CTTACCAATTCCCTTGAAAGATAGTTACTATTTCTCTCAATCATCAAACGCAAGTCataatgaatttcaaatgagtCCGTGCAAtgtttgatcatttttggagttttgctggagtaattatttttgcaa-aaacgaTAAATATTT-------CAACCTACTTGTCTGACCAATTCTCGCTGTTTCTAGTTGCAACTTCAACGCTTTTAAGCAGCTCATGGACCTC
i caePb3.Scfld02_0      I 3 I 6
s caeJap4.Scaffold17934   169337 221 +   591668 attacCAATTCTCTTGAGATTATATTTGTATTTCGCTCAGTCATGAGTCTCAGATCGTAGTGTAGTTCAAAAGTTTCTGCACAATGTTTCATCATCTTTGGAGCTCTGGAAAGTTGAACGCG---GTAA-GGAAAAAGAACACATGCGGAGACATCTTACTTTTCAATCCATCTTTCGTGGTTACGAGAGCCAATTTCAACACTTCTCAATAGCTCGTGTACCTG
i caeJap4.Scaffold17934 C 0 I 335

a score=193567.000000
s ce10.chrX              4778917 327 + 17718866 TTAATAATA--TATTATTCAACAT----AATATCTAAAAT---ATTCACCATATCTGAGTCTGTGCATTGAACAATATCGTTTGCTGCATTCACAATTAATTCATTCAACGAGTTTTGCGTCGAACGAACGTATCCAGGAATATCGACAATATGAACTGTATGATTGCTTTCATTGATTGTTCCAACACTGATCCCGGAATCAGTAACCACACTCCCTCTGTCATATGGGTCAGAACCAGCATCCAGTAAAAGGTTGATCTTGTCTAGAATATATTTCACTGTTCTGGCATACAGGGCTGTAACCAGATTATCTCTTATCAATCGACTCTGAAA--AA-
s cb4.chrX              10113139 288 + 21540570 ------------------------------------------------CCATATCAGAGTCTGTACATTGTACTATATCATTCGTTGCGTTTACTATCAATTCGTTCAGTGAGTTTTGAGTAGATCGAACATATCCGGGAATATCAATAATGTGAACAGTATGGTTGCTCTCGTTGATTGTCCCAACACTGATTCCAGAGTCTGTCACAACTGATGTGCGGTCGTAGGAATCCGGAATGATGTCGAGAAGAAGATTTATTTTGTCAATGATGTATTTGACCATTCGAGAGTACAACGCGGTTACAAGACTATCACGCATCAGTCggctctgaaaaa---
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0   1683248 324 -  4500979 ttgcaattt-ttctcgtttcgaaC----AAAACTTTTGA-----CTTGCCATATCTGAATCTGTGCACTGTACTATATCATTAGTAGCGTTCACTATTAATTCGTTCAGTGAATTTTGAGTAGACCTCACGTATCCGGGAATATCAATGATGTGAATGATATGGTTGTTCTCATTGATAGTGCCTACACTGATTCCAGAGTCCGTCACCACACTTCCACGATCATAGGAGTCCGGATAAATatcaagaagaagattgaTTTTGTCAATGATATACTTCACTGTTCTTGAGTATAGTGCTGTCACCAGACTGTCTCTCATCAAACGGCTCTtaga-----
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409     16888 315 -   201088 tgaacgCTA-AAAGAATATAGTTC----AGCA--------------TACCATATCTGAATCTGTGCATTGTATGATATCATTTGTTGCATTTACAATAAGTTCATTTAGTGAGTTCTGAGTAGAACGAACATATCCAGGAATATCAATGATGTGAATGGTatgattattttcattcacaGTGCCGACGCTAATACCGGAGTCAGTGAGTACGCTGCCACTGTCATAGGAATCCGGAACTACATCAAGTAGCAAGTTGAGCTTGTCGATTATAAATTTCACCATCCGGGAGTATAGAGCTGTGACTAGGTTGTCTCTCATCAGACGGCTCTGTAA-----
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3038223 323 +  4147112 TCAACATTATTTATAGGTTGGTTC----AATAACTGTGG-------TACCATATCTGAATCCGTACATTGCACAATATCATTTGTTGCATTCACAATAAGTTCATTCAAAGAGTTCTGGGTAGATCTAACATATCCTGGGATGTCGATGATATGAATTGTATGATTGTTATCATTTATTGTTCCAACACTGATTCCCGAGTCGGTCACCACACTCCCACGATCATATGGGTCAGGAACAAGGTCAAGCAGTATATTCAGCTTATCAATTATGAACTTTACCATTCGAGAGTATAACGCCGTTACTAAGTTGTCTCGCATCAACCGGCTCTGAAA-----
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   169893 326 +   591668 ---------TGAATAAAATAACACCAAGAAAACATTTAATAAAACCTACCATATCAGAATCAGTATTTTGAATAATGTCGTTGGCAGCATTCACAATCAACTCATTTAAGGAATTTTGTGTAGAACGAACATATCCTGGCACGTCAATTATATGAATTATATGATTATTCTCATTGCTTGTCCCCACACTGACACCAGAATCGGTAATAACACTTCCTCGATCATAAGAGTCTGGGACAACGTCTAACAGAAAATTCAACTTGTCTATTATAAATTTCACAGTACGAGAGTATAATGCTGTTACCAAATTGTCGCGAAGCAACCTGCTCTGAAa----g
i caeJap4.Scaffold17934 I 335 C 0

a score=-11744.000000
s ce10.chrX              4779244 47 + 17718866 TATTTATTTTCTTGAAG-TAGA----------------TAGGTTATTTGAGAAAAAAACATTTT---
s caeRem4.Crem_Contig0   1683572 30 -  4500979 ----------------a-taca----------------ttttgta-aaaaGTGGGGGAATTTTT---
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold409     17203 33 -   201088 --------------TAA-TACT----------------GTAAGTAcaagaaaagtggaaatgaT---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3038546 34 +  4147112 --------------TAACTAAA----------------TTGAGTTTAAAAGAAAACTAACGGCT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   170219 55 +   591668 -----------ttgaaa-caaaaaaaaatttgaaagtttTAACTATTAAAAAggaatttgtttttct
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10113427 40 + 21540570 I

a score=74770.000000
s ce10.chrX              4779291 89 + 17718866 TACATCAATCAAAGCATCCGAAACCATAAATCGATACATCGTCAGTGCAGAAACTCCTAGCAAACTGCTGGCATCTTCAAGATCTGGAA
s cb4.chrX              10113467 89 + 21540570 TACATCAATCAAAGTGTCTGACACCATAAATCTATACATTGTCAATGCCGAAACTCCTAGTAAGCTACATGCGTCCTCAAGATCTGAAA
i cb4.chrX              I 40 I 33
s caeRem4.Crem_Contig0   1683610 89 -  4500979 CACATCTATTAGAGCATCAGAAACCATAAATCTATACATTGTTAATGCAGACACTCCTAGTAAACTGCAAGCATCTTCCAAATCTGAAA
i caeRem4.Crem_Contig0  I 8 I 32
s caeSp111.Scaffold409     17236 89 -   201088 TACATCAATAAGTGCATCAGATACCATGAATCGATACATCGTGAGAGCTGAAACGCCCAATAGACCACAAGCATCTtccaaatctgaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3038580 89 +  4147112 CACGTCAATTAGCGCATCTGACACCATGAAACGATACATTGTGAGAGCAGAGACACCCAGTAGACTGCTTGCATCTTCCAAATCTGAAA
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold17934   170274 89 +   591668 cacATCAATATTGGCTTCTGATACCATAAACCGATACATGGCTAGAGCTGAGACACCAAGCAAGCAGCATGCATCTTCAAGATCTGaaa
i caeJap4.Scaffold17934 C 0 I 65

a score=-74.000000
s ce10.chrX              4779380 27 + 17718866 AGCAAGAAAATTTAG---TTTTTGGAATTA
s caeSp111.Scaffold409     17325 30 -   201088 atgataagaacTCAAAACACTTTCAGATTA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3038669 36 +  4147112 I
e caeJap4.Scaffold17934   170363 65 +   591668 I
e cb4.chrX              10113556 33 + 21540570 I
e caeRem4.Crem_Contig0   1683699 32 -  4500979 I

a score=0.000000
s ce10.chrX              4779407 485 + 17718866 TGATAATAATAATAAGAATTATGATAGGACATTTTCTCTATTAAAACTTTATGCAAGACTAATGTAGTCattaatttttaatttttaacaaatttaaaGTCCTTAAAAATTACAAAAGACTTTCCAAAGTTCGATTTTTGACAACGAAAGTTATTCAAGAAATTTTGGAAAACTAACACGGAGACGCGAAATAATTTATTTGCTGTTGTGGATAAAAACCGAAAAATAACAATAAATCAGTAAAATAAATTTAAAAAAATCGAGAGGTAAAATATCAAAATCCCATGGAAATCCACTAAttggaattagagtactttttaaagacgtatgtacaaatctttttctattacgaacaatgtgccgtttcgagaccgaccaccgtattttgttgcaaacatcTTTAAACTTTTGAACAAAATAAATGTATGTTTTGGTAGGATGCCATTTCGTAAAACCTTTAGTTTTAGCCTTTCCCATAAAAAGGC
e caePb3.Scfld02_0       3038669  36 +  4147112 I
e caeJap4.Scaffold17934   170363  65 +   591668 I
e cb4.chrX              10113556  33 + 21540570 I
e caeSp111.Scaffold409     17355   0 -   201088 C
e caeRem4.Crem_Contig0   1683699  32 -  4500979 I

a score=613.000000
s ce10.chrX              4779892 2 + 17718866 TC
s cb4.chrX              10113589 2 + 21540570 TC
i cb4.chrX              I 33 C 0
s caeSp111.Scaffold409     17355 2 -   201088 TT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3038705 2 +  4147112 TT
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17934   170363 65 +   591668 I
e caeRem4.Crem_Contig0   1683699 32 -  4500979 I

a score=422.000000
s ce10.chrX              4779894 1 + 17718866 T
s cb4.chrX              10113591 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1683731 1 -  4500979 T
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold409     17357 1 -   201088 T
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3038707 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   170363 65 +   591668 I

a score=395557.000000
s ce10.chrX              4779895 577 + 17718866  
s cb4.chrX              10113592 581 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1683732 576 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     17358 577 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3038708 578 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   170428 564 +   591668  
i caeJap4.Scaffold17934 I 65 I 941

a score=-8753.000000
s ce10.chrX              4780472 28 + 17718866 AACCGGTGAAGCTTACGGAAAGGGACCT
s cb4.chrX              10114173 21 + 21540570 AAT-------GTTCGGAATATGAGAGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1684308 21 -  4500979 GAT-------AATTCCACTATTTCAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     17935 15 -   201088 AA-------------CCAATTTTATATC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3039286 21 +  4147112 gat-------gctGGTTGAATCAAGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   170992 941 +   591668 I

a score=129517.000000
s ce10.chrX              4780500 141 + 17718866 ACCTCAAAAAGAGTGTCGAGCTTTTTGCTTCAAATAACGAAGATGTTATTGTTGGAATCACCGAATAAAAGTTGCACCTTGGAGACGAAACTGTGTTAAACGGATTGACAAAAAACAATTGTCCTCCTCGGGAAAACTGAA
s cb4.chrX              10114194 141 + 21540570 ACCTTAAAAATAGGGTGGAACTTTTGGACTCAAACAATGATGAAGTGATTGTTGGAATAACAGAATAGAAGTTGCATCTTGGTGATGATACTGTATTGAATGGGTttacaaaaaacaattgtCCGCCTCTCGAAAACTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1684329 141 -  4500979 ACCTTAGGAATAGTGTGGAGCTTTTTGATTCGAATAGAGAAGACGTGATTGTAGGGATAACCGAATAAAAATTGCATCTTGGAGAAGAGACAGTGTTGAAAGGATTCACAAAGAATAACTGTCCACCtcttgaaaactgga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     17950 141 -   201088 ACCTCAAGAATAGAGTAGAGTTCTTAGCTTCAAATAAGGAGGAGGTTATGGTAGGGATAACGGAATAAAAATTGCATCTTGGAGAGGACACTGTGTTGAATGGATTGACGAAAAAGAGTTGTCCACCtcttgaaaactaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3039307 141 +  4147112 ACCTTAAGAATAATGTTGAACTTTTTGCTTCAAATAAAGATGAGGTAATTGTGGGAATGACGGAATAAAAGTTACATCGTGGGGAGGACACAGTGTTGAATGGATTTACAAAAAACAGCTGACCACctctcgaaaactgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   171933 141 +   591668 ACCTCAAAAATAGAGTGGAACTCTTCGCTTCAAATAATGAAGATGTGATTGTCGGAATGACCGAATAAAAATTACATCGCGGTGATGACACGGTGTTGAATGGattcacaaaaaataattgtccTCCTCGAGAAAACTAAA
i caeJap4.Scaffold17934 I 941 C 0

a score=546.000000
s ce10.chrX              4780641 1 + 17718866 A
s cb4.chrX              10114335 1 + 21540570 A
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1684470 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold409     18091 1 -   201088 a
i caeSp111.Scaffold409  C 0 I 34
e caePb3.Scfld02_0       3039448 0 +  4147112 C
e caeJap4.Scaffold17934   172074 0 +   591668 C

a score=0.000000
s ce10.chrX              4780642 9 + 17718866 CAGGAGGAT
e caePb3.Scfld02_0       3039448 0 +  4147112 C
e caeJap4.Scaffold17934   172074 0 +   591668 C
e cb4.chrX              10114336 4 + 21540570 I
e caeSp111.Scaffold409     18092 34 -   201088 I
e caeRem4.Crem_Contig0   1684471 42 -  4500979 I

a score=-4634.000000
s ce10.chrX              4780651 65 + 17718866 -AATTTCAAGACGCAGGCAAGTAAAATT------------------------GAAAAGAAAAGTATTTGTATCAGTCA--------TGTGTAAAATTT
s cb4.chrX              10114340 19 + 21540570 AATTTCCTTGTTA---------GAAATT----------------------------------------------------------------------
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_0       3039448 88 +  4147112 -aatttctcgTTG---------AGAACTAGGCTGATTTATTTGTAAACTCAGAAGACCGAAAGCATTTGTTTCTATGAAATCATTTGATTTAAAATTT
i caePb3.Scfld02_0      C 0 I 71
e caeJap4.Scaffold17934   172074  0 +   591668 C
e caeSp111.Scaffold409     18092 34 -   201088 I
e caeRem4.Crem_Contig0   1684471 42 -  4500979 I

a score=-25.000000
s ce10.chrX              4780716 15 + 17718866 GTAATATTTCTAAAA
s cb4.chrX              10114359 15 + 21540570 CTACTTTATTTACTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3039536 71 +  4147112 I
e caeJap4.Scaffold17934   172074  0 +   591668 C
e caeSp111.Scaffold409     18092 34 -   201088 I
e caeRem4.Crem_Contig0   1684471 42 -  4500979 I

a score=0.000000
s ce10.chrX              4780731 484 + 17718866 AGAAAGCGAAATGCTTTGGTAAAACAATTCCAGTATTTTGCAATTCATCTAAAACATATATATGTAATAAAATCACTTATATGTAATAAAATGTTAGGTTTGAGTTTTTTAACGATAATAATAAAAACACTCAGAAATAATATTTTCTACTATATCTAGTTCCAGATAATGTTTTCTACCAATAATGTTTTGTAGAATTACAGTCCACTATACTAAGCCAGGGCAAATGCGCTTTACCAATCAGACGGGATCTAATCTAATTTGAGCTGTTCAACTGTAACTTATTTCATATCAATAGATATTTAATTTTTGGTAAAACAATTGTGCAGCCAATATTCAGAATATTACCTGAGTATCTAAAACGTACTTGAGTTATTTTTAAGAGGGGTTTTTAATGCTAATTCTTCTCAATTGTTCAAGCTTGAAAACTGAAAATTTTCTGAGACCCACAAAAAGAGGATTGACCCTATTTTATTGCACTGGT
e caePb3.Scfld02_0       3039536  71 +  4147112 I
e caeJap4.Scaffold17934   172074   0 +   591668 C
e cb4.chrX              10114374   0 + 21540570 C
e caeSp111.Scaffold409     18092  34 -   201088 I
e caeRem4.Crem_Contig0   1684471  42 -  4500979 I

a score=125.000000
s ce10.chrX              4781215 42 + 17718866 TTTACTTAATTTTTCATTT-TTAATTTGCCTAAGATCTAGCCA
s caeJap4.Scaffold17934   172074 43 +   591668 TTCAATAATGTTTTCATGTgttcaattcaaaaatatctGCTCC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3039536 71 +  4147112 I
e cb4.chrX              10114374  0 + 21540570 C
e caeSp111.Scaffold409     18092 34 -   201088 I
e caeRem4.Crem_Contig0   1684471 42 -  4500979 I

a score=29.000000
s ce10.chrX              4781257 1 + 17718866 T
s caePb3.Scfld02_0       3039607 1 +  4147112 T
i caePb3.Scfld02_0      I 71 C 0
s caeJap4.Scaffold17934   172117 1 +   591668 C
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10114374 0 + 21540570 C
e caeSp111.Scaffold409     18092 34 -   201088 I
e caeRem4.Crem_Contig0   1684471 42 -  4500979 I

a score=186661.000000
s ce10.chrX              4781258 310 + 17718866 ACCCAGCACTGTCCCTGTGTAAACCGCTTGTTGATTGCATCGACAAATTCTCGATGATTGCACATTGACAGAAAAGCTACAGAAGATGACATAAAAGACGATGTTTGAGCT-----------------------------GCAAATCGC----GGTT----TTTAATTTACACATTATTAAAAGAAAGTC-TTACATTTGAACTTTTGATTATTGCTGAACCTTCCCATTGTATTAGTTTGCAATTGATCTACTGGTTTC------CTTAGCTGTTCTTGAAATGTTCTTAATGGCTTGGGTGGTGGAACTGGTG---CATGGTGTCGGTTCATGCCAATTGATAAGCTTTCTGAAA
s cb4.chrX              10114374 335 + 21540570 ACCCAACATTGCCCTTGTGTAAACCTTTTATTTATAGCGTCCACAAATTCTCGGTGATTGCACATTGATAGAAAAGCTACTGATGATGACATGAAGGAGGATGTGTGTGCTAAAGTTTGAAtatatagttttgaaaatgaaaaaatcca----agaaaaaatacaaacttttatgtatctcatt------------tttaaGTTTGTGGTTCGTATTGAATCTACCCAGTGTTGTAGTTTGTAATTGGTCAACAGGTTTC------CTGATATGTTCCTGAAATGTTCGTAATGGTTTTGGTGGAGGTACAGGAGGTCCTTGTTGTCGGTTCATTCCAATTGAGAGGCTTTCTGAGA
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   1684513 315 -  4500979 ACCCAACACTGTCCCTGGGTGAATCTTTTGTTGATAGCGTCCACAAACTCTCGGTGATTACACATTGAGAGAAAAGCAACTGAGGATGACATAAATGATGAagtttgagct-----------------------------gaaaattac----tgtAATCACAGAGTTTGTCCTTTATCACAAT--AGTT-ATACATTTGAATTTCTGGTTTGTGTTAAACCTCCCTAGTGTTGTTGTTTGAAGTTGCTCAATTGGCTTC------TTTGTATGTTCTTGAAACGTTCGCATTGGTTTTGGCGGCGGTACCGGAGGTCCTTGTTGTCTATTAATCCCAATCGAGAGACTTTCTTAAT
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold409     18126 307 -   201088 ACCCAACATTGTCCTTGAGTGAATCTCTTGTTGATAGCATCTACGAACTCCCGATGGTTGCACATTGAAAGGAAAGCAACTGATGATGACATGAATGAAGATGTTTGAGct----------------------------gaaaaacaca----tttttatcTCAAATC----CTATGGCATTCT--------GacatttgaacttttgattaGGGTTGAACCTTCCCAAAGTTGTTGTTTGAAGCTGTTCCCCAGGTTTT------CTTAAATGTTCTTGAAACGTTCTTAAAGGTTTTGGTGGTGGTACCGGAGGTGCTTGTTGTCTGTTCATTCCAATTGTTAAACTTTCTGGAA
i caeSp111.Scaffold409  I 34 C 0
s caePb3.Scfld02_0       3039608 311 +  4147112 ACCCAACACTGCCCCTGCGTAAATCTTTTGTTAATAGCATCGACAAATTCCCGATGGTTACACATTGACAAAAATGCCACTGATGAAGACATGAAGGAAGATGTTTGAGCT----------------------------AAACTATCAA----AGCTAAAATTGAATCTTCATTATTTCAGACt--------gacttttgaacttttgattgtTATTAAACCTTCCTAATGTTGTTGTCTGCAACTGCTCTACTGGTTTT------CTCATGTGCTCTTGGAAAGTTCTCAATGGCTTTGGAGGAGGTACAGGCGGGCCAAGCTGTCGGTTTATTCCAATCGATAAACTCTCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   172118 326 +   591668 ACCCAACATTGTCCCTGAGTAAATCGTTTGTTGATCGCTTCCACAAACTCTTTATGATTGCACATTGAAAGAAAAGCAATGGATGATGACATGAAAGACGAAGATGATGCT-----------------------------GTAAATGGAGACGAATAAATATATTAACATCTCAATCCCTTGGT--GTTTGTTACATTTAAATTTGTGGTTCACATTATACCGTCCTAATGTGGTAACTTGCAATTGATCTGTTGGTTTTGAATGGTTTAATCGTTCTTGGAATGTTCTTAATGGTTTTGGCGGAGGAACCGGAGGGCATTGATGTTTTGACATTCCAGTTGAAAGACTTTCTAGAA
i caeJap4.Scaffold17934 C 0 I 8

a score=-8271.000000
s ce10.chrX              4781568 20 + 17718866 CAGTTTAAATTGAAAGAGAT-----------------------
s caeRem4.Crem_Contig0   1684828 11 -  4500979 ---------TAGATAATTGT-----------------------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold409     18433 18 -   201088 --TGAAACATTGAAGGTCAT-----------------------
i caeSp111.Scaffold409  C 0 I 16
s caePb3.Scfld02_0       3039919 17 +  4147112 --CT-TGTTTCGACGGTTAT-----------------------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   172452 43 +   591668 CAGTTTGGACCaagcatttttgtttttttccaacaaaaaaatt
i caeJap4.Scaffold17934 I 8 C 0
e cb4.chrX              10114709 39 + 21540570 I

a score=-3820.000000
s ce10.chrX              4781588 13 + 17718866 ----ACATGT--------CTCCGGT
s caeRem4.Crem_Contig0   1684846 14 -  4500979 -------TCT----AATTGTTCAGT
i caeRem4.Crem_Contig0  I 7 I 5
s caePb3.Scfld02_0       3039946  7 +  4147112 ------------------TTTCAAG
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   172495 25 +   591668 atcgatttgtGTCgatttctttgaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10114709 39 + 21540570 I
e caeSp111.Scaffold409     18451 16 -   201088 I

a score=-1030.000000
s ce10.chrX              4781601  2 + 17718866 CT-----------------------
s caeJap4.Scaffold17934   172520 25 +   591668 tttttttgaagcaagcAAAACCAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3039953  0 +  4147112 C
e cb4.chrX              10114709 39 + 21540570 I
e caeSp111.Scaffold409     18451 16 -   201088 I
e caeRem4.Crem_Contig0   1684860  5 -  4500979 I

a score=99877.000000
s ce10.chrX              4781603 131 + 17718866 ACCTGTTCGTTTAACTTTTCCAATCCTTGCATTCAACTCTTTAGTAATTTCATCAACTTTCGTGAAAGTTTCTCGACGTTTTAGAGATGTTATGAATGGTGCTGCTGACGACGATGGAAGTGCCATGGACA
s cb4.chrX              10114748 131 + 21540570 ACCTGTTCGTTTAACTTTTCCAATTCTTGCGTTAAGTTCTCTCGTGACCTCATCAACTTTTGAGAATGTTTCTCGTCTTCTCAGGTTTGTTAAAAATCCACTGTTCGAAGATGATGGCAGCACCATTGATA
i cb4.chrX              I 39 I 402
s caeRem4.Crem_Contig0   1684865 131 -  4500979 ACCTGTTCTTTTAACTTTTCCGATTCTTGCATTTATTTCTTTGGTAATCTCATCAacttttgtaaaagtttccCGTCTTCTCAAGGATGTGATGAATCCACTAGTAGAAGAAGATGGAAGTGCCATGGACA
i caeRem4.Crem_Contig0  I 5 I 53
s caeSp111.Scaffold409     18467 131 -   201088 ACCTGTTCGTTTGACTTTTCCAATTCGCGcattcaattctttcgtAATTTCATCAACTTTTGTAAAtgtctctcttcttttcaacacAGTCAGAAAACCACTAGTAGAAGATGCAGGAAGAATCATAGACA
i caeSp111.Scaffold409  I 16 I 41
s caePb3.Scfld02_0       3039953 131 +  4147112 ACCTGTTCgtttcacttttccaattcTTGCATTCAATTCTTTCGTAATCTCATCAACTTTCGTAAAtgtctctcttcttttcaatgacGTAATGAAACCACTTGTCGATGATGACGGGAGTACCATAGACA
i caePb3.Scfld02_0      C 0 I 43
s caeJap4.Scaffold17934   172545 128 +   591668 ACCTGTTCTTTTGACTTTCCCGATCCTCGATTGCAGTTCCTTGGTAATTTCATCAACTTTACTGAACGTATCTCGTCTTTTCAATGACGCAATAAAATGA---ACCGAAGATGACGGAATCGACATTGaca
i caeJap4.Scaffold17934 C 0 C 0

a score=96230.000000
s ce10.chrX              4781734 254 + 17718866 ATCT--------------TTT------ATT---GGAGATT--------------------------------------------------------TCCTCAATTTCTTGTGTCAAGTGGGAGGTTGACATTGAAAGTGCTTTATTGAATTTTGAAAGGTTAGAATTACTTCGTGGTGGAACTG-AAAT---TAGT-------AAAT-----TGTTAAATAATTTA----TATTTTACT-------CACTGATTGGTTGCTCAGGATGCGGAATCGGAGTCGCTGCACATGAATCATGTGAGCCGGAAGAGAATAACGAGGTTGAAAGTCTCGAGTCGATTGAGTTATCTCTGAATTTGA--
s cb4.chrX              10115281 261 + 21540570 ACCT--------------TTT------GTT---GGGTTCT--------------------------------------------------------TCACACATCGAATGAGTCAAATGCGATGTGGACATTGAAAGTTGTTTGTTCAATCTGGACAGATTTGACCCTGTACGTAATGCTGCTG-GAAt---tcgt-------ttat-----ttttcaaattacca----cttattatttttcatgtaCCTATTGGATGCTCAGGCTGAGGAATCGGTGTATGTGCGCAAGATTCTTGAGACCCTGTTGAAAACAAAGATGTTGACAGACGAGAATCTATTGAGTTGTCTCTGAAATAAA--
i cb4.chrX              I 402 C 0
s caeRem4.Crem_Contig0   1685049 261 -  4500979 ACCT--------------CTT------GTTAACAGGCTCT--------------------------------------------------------TCGTTAACAGCATTCACCAAATGAGATGTTGACATGGATAATGGCTTGTTTAGTTTCGACAAATTGGAACCACTGCGAAATGCAGCTA-TAAGttatctt-------ctat-----ttttgaacattctA----TTTGGACCCT------TACCTATAGGCTGCTCAGGCTGAGGTACCGGAGTATGAGCACAAGATTCTCTTGATCCGGTTGAAAATAACGATGTTGACAGCCGCGAGTCTATTGAATTgtctctgaaataaa--
i caeRem4.Crem_Contig0  I 53 C 0
s caeSp111.Scaffold409     18639 255 -   201088 ACCT--------------TTT------ATT---AGGTTCT--------------------------------------------------------ACATCAACTGCATGCGATAAGTGAGATGTCGACATTGAAAGTGGTTTGTTCAATCTCGCAAGATTTGAGTTGCTACGGAaaggaactgaaaat---tatt-------cttt-----ttgtgGTCCCTCG-----TGTATCCTTT------TACCGATTGGATGTTCAGGCTGTGGGATTGGAGTATGTGCACAAGATTCTTGACTTCCCGTTGAGAATAAACTTGTTGACAGTCTTGAATCTATTGAATtgtctctgaaaataa--
i caeSp111.Scaffold409  I 41 I 33
s caePb3.Scfld02_0       3040127 262 +  4147112 ACCT--------------TTT------GTT---TGGTTCT--------------------------------------------------------TCAATTACTGTTTGTGTTAAATGAGACGTCGACATTGATAACGGTTTGTTTAGTCTAGCCAAGTTAGACATGCTACGAAACGGAACTG-GAAT---Tattaattcaattta-----ttttgatgaattac----TATTTCTTTT------TACCCAGAGGATGTTCAGGTTGTGGAATTGGTGTATGAGCACAAGACTCTCTAGATCCACTTGAAAACAAGGATGTTGACAGTCGAGAGTCTATTGAGttgtctctgaaaatta--
i caePb3.Scfld02_0      I 43 I 7
s caeJap4.Scaffold17934   172673 342 +   591668 atctaaaaaaaaagtaaatttaatAGAATT---AGGATTTCACAAGTttcttaaaaaacaaaacaaaaaacaaaaaaccttttatttttctctctgtcATTTTCAGCTGAAATTAAATGTGATGCCGATACAGATAGTGATTTATTCAGTCGAGACAGATTTCCGTTTTCTCGATAAGGCACTG-AAAT---TATG-------TTGTAAACGTAGAAAACATTCGAACCGCAGTTTTTCT------TGCCTATTGTATGTTCTGGCTGTGGTATGGGAGTGTGACCGCAAGAATCTATAGATTCATTTAAAAACAGAGAAGTGGACATTCGAGAATCTATGGAATTGTctctcaaaaaatga
i caeJap4.Scaffold17934 C 0 C 0

a score=-6861.000000
s ce10.chrX              4781988 23 + 17718866 TACGT-------TATAGTGTAA---------TTGAAACG
s cb4.chrX              10115542 19 + 21540570 ------------TATAATAAGGA--------CTGAAAAG
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1685310 27 -  4500979 ------------tataataaGAGTGTTCGTcttgaaaaa
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0       3040396 29 +  4147112 tactcaa--tttcagaaaaaagt--------ctgaaaaa
i caePb3.Scfld02_0      I 7 I 4
s caeJap4.Scaffold17934   173015 25 +   591668 -----aacgtcGTTAAATGAATT--------ATGTACA-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     18894 33 -   201088 I

a score=232209.000000
s ce10.chrX              4782011 464 + 17718866  
s cb4.chrX              10115565 478 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1685343 461 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409     18927 444 -   201088  
i caeSp111.Scaffold409  I 33 C 0
s caePb3.Scfld02_0       3040429 473 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   173040 493 +   591668  
i caeJap4.Scaffold17934 C 0 I 405

a score=18124.000000
s ce10.chrX              4782475 77 + 17718866 TCTCC----AAGCGCCGCC--AGGAATTGTCCACTGGACATTTAATCGCGGGCACAGGGTGGCAGGGCA-TTGATCTGTGAAAA----------------
s cb4.chrX              10116043 89 + 21540570 TCTCCAT--GCGCACCGCC--AGCTATTTTCTGTTGGACATTCGATCATAAG-CATGGGTGGCATTGAAACT------TGGAAGcattgatctacagaaa
i cb4.chrX              C 0 I 3411
s caeRem4.Crem_Contig0   1685804 63 -  4500979 TCTCCAT--GCG--CCGCC--agttattttttgatggaCATTCGATCGCAAGACATGGGTGGCATGAAA-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     19371 75 -   201088 TCCCATT--GAATGCCGCCGAGGGGATTTTCCGATGAACATTCGATCGCATGATTTGTGTGGCATGAAA-CT------TGGAAG----------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3040902 75 +  4147112 TCTCTCTCCAAGCGCCGCC--AGTTATTTTCTGACGGACATTCGATCGCAAGACTTGGGTGGCATGAAA-CT------TGAAAG----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I

a score=-9495.000000
s ce10.chrX              4782552 49 + 17718866 CCTGGAATTGGAAAAATTAATTGCAAATGAAC-AAAT--TACTTTAGAAAAT-----------------------------
s caeRem4.Crem_Contig0   1685867 43 -  4500979 ------CTTGGAAACATTGATCAAGGGTAAAC-GGAT--CATCGTAGAGAAT-----------------------------
i caeRem4.Crem_Contig0  C 0 I 203
s caeSp111.Scaffold409     19446 56 -   201088 --------------GAAAGA--GAACTTGAACCAGATGGGAGCAATGACAGTTAGCAGATATG---------TTAGCAGAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3040977 64 +  4147112 --------------CATTGATCtaaggaaaacaaaat--gagcaatGATGGTCA-CAAGTAAGGGGTTTTCACGAATGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I

a score=273.000000
s ce10.chrX              4782601 1 + 17718866 A
s caeSp111.Scaffold409     19502 1 -   201088 A
i caeSp111.Scaffold409  C 0 I 100
s caePb3.Scfld02_0       3041041 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1685910 203 -  4500979 I

a score=-1105.000000
s ce10.chrX              4782602 74 + 17718866 TAAATTGCAACAATAAGTTCCGAGCAAGGCTAGATGGCACTTATATCCGGCAAATGTACTTTTTAGGTTACAAT
s caePb3.Scfld02_0       3041042 48 +  4147112 GAG-----AACAGTAgg----aatcaaaacaaaatgtgg--------CGGTAGATGTA---------GCGGggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeSp111.Scaffold409     19503 100 -   201088 I
e caeRem4.Crem_Contig0   1685910 203 -  4500979 I

a score=-1621.000000
s ce10.chrX              4782676 28 + 17718866 TATCAAAAATTACTCTAAT------TTTGTTAAT----
s caeSp111.Scaffold409     19603 32 -   201088 TCTGAAATTCTACACAACt------tttttgcgctatt
i caeSp111.Scaffold409  I 100 C 0
s caePb3.Scfld02_0       3041090 35 +  4147112 catgaaaaatgaaaggagtctttgatttttccact---
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1685910 203 -  4500979 I

a score=-4597.000000
s ce10.chrX              4782704 143 + 17718866 GAGTATACTAGCATTAATATCCAATTGACTTTTTCAAAATATCAGAT------------------------------ATTCTCTTA---------------------ATCGCGTTTTTTT--------------CAAA------------ATTACAATAATAAATGC-------------------------------CACATAATAAAAAAAA---------------------------------ATTTTCT-----------------------------------------CACGAAAAAGTTGAATATTCAG--------GTATGGTT
s caeSp111.Scaffold409     19635 329 -   201088 tattatttta----ttttatggAATTTAgttcttccaaaaatcaaatgtcAGAGTGACAGTAAGTTGGCGGAGACCAACCCTcccaagaaaagaaacgcCGTGACTCACAGCGTTCTCTTTCGAGATTCGTGGCCAAAATGATCATTTATATTGTAATAATTAAAGCATAACCGATCAGCCACGTCATCGGGTTTCGACACTAGACATAAAAAGTGTACCGACAGTTTGCGGGTTCAGCCGCCGCCTATCTTTTGTGTGTGAAGGGGCGGGGTCGGAGGGTTCTAGAGAACTGTGCGCTTAAAACCTGTATAACTTGCCttaatattattatt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3041125 100 +  4147112 I
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1685910 203 -  4500979 I

a score=-24066.000000
s ce10.chrX              4782847 398 + 17718866  
s caeSp111.Scaffold409     19964 519 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3041225 221 +  4147112  
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1685910 203 -  4500979 I

a score=20315.000000
s ce10.chrX              4783245 274 + 17718866 AGTTTCGAAATGAGAGCTACTTACCCAAACT----CAACTACATCA---TCGCT----CAATCATTTC--TTACTCTGCCGTTGTTTTTGTCTTTTTTAGTCTCTCAGCCAATTCTTCTGGGTATTACCCGTTGGATTTTGTTTTGCAAC----ATACCGAAACTAGAGTACACATTCCAATAATACCTCG-------TGGTATTTCATAAAAGTTTTTTTTACAACACAACTTTTCACATGTGTTCCTTATTTAGAAGTTCTCATGACTCAACTG--TATTGACACTATTACAAAATTT
s caeRem4.Crem_Contig0   1686113 196 -  4500979 AGTTTCGAAATTAGAGCTACTTACCCAATTT----CAACTACATCAGTCTTCTCTTACCAATCAACTccact------------ttcttgtttttcttagT--------CAATTCTTCGAGTCACCGCAT-CTGGA---TGTTTCGCAAT----AAAC---AGTCATTGTATAAATTCCTATGATACCGCG-------CGCCA----GTTA----------TAC-A-----------ACCTGTATTT------------------------------------ACTTagtttaaattttc
i caeRem4.Crem_Contig0  I 203 C 0
s caeSp111.Scaffold409     20483 233 -   201088 AGTTTCGTTGTAAGAGCTACTTACCCAAACT----CAACTACGTCT---TCGGCCCACCAATCATGTCCACAACTTTGtc-tactttttgtttttccgaGT--------CAATTCTTCTGGGCATTGaa----------agtttcgaaaca---aaac---agTCATCGTTCTCTTTCAAACATCACCTTGCCTTTTTTGTCATGAAGAAA----------TCCAA-----------ACTTGTATTT--------------TTCATGACTCAAATATGTATTGACTCAGTACAAGTTCTC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3041446 234 +  4147112 agtttcgaaattggaGCTACTTACCCTAACTCGTCCATCTACATCA---TCCCTCTACCAATCATGTC--CTATTTCTAC-TACTCCTTGTTTTTCCATGT--------CAATTCTTCTGGGCATTACAT-CTGGA-TGTGTTTCGCAACCCCTAAAC---AGTCATAGTATACTTT------TTACCTCG-------TGTCGTTTTATAA----------TCCAA-----------ACTTGTATTTC-------------TTTATGACTCACCTGTCTATTTACACTGTTCAATATTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   173533 405 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I

a score=30630.000000
s ce10.chrX              4783519 166 + 17718866 AACTTGAGTCA--TTGTGTCATTTGATCGTTTT----ATTCGT----------TTCTCCTC-----CA--TTTGAAAT---TTTTTTCACCGCAAGATTTGATTCATGAGAGAGGTT-----GAGGCCTTC--ATTTTTACACCATCGCACCTCTTT------TAAACCTGTTTTCAAT--TGCCTT----CTTGTATAATCGAATCTTGA
s caeRem4.Crem_Contig0   1686309 170 -  4500979 gaattgagTCA--TTGTGTCATCTGACCTTCtttgtatttctt----------tttgtcCC-----CACCTTTGAATTTCGTTTCCTCACCGC-AAGTTTGATTCATGACGAGGTTT-----GCGGTCTCC--ACCTGTACACCATCACACCTCAT-------TAAACCTGTTTTCAAT--AGGCCT----TTT---TAATCGAATCTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     20716 172 -   201088 TACTTGAGTCA--CTATGTCATCTGACCTTGttcgtaattttt--------tctttttctc-----caccTGCGAATA---TTTCATCACC----GGTTCGATTCATGACTTGGTTT-----Gcggtttct--tttcttacACCATCGCACCTCAACCTCA--TAAACCTGTTTTCAAT--AGACCCT---TTT---TAATTGAATCTCGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3041680 178 +  4147112 AAATT---------TGAGTCATCTGACCttctttgtaatttttcactcctcctcttttctctgaattatctttgaatt---ttcgcgCGCC---AAGTTTTATTCAAGGAGAGGTTT-----GCGgtctctcattttttaca----CGAATTTTTACCTCGATTGAACCTGTTTTCAAT--TGACCC----TTT---TAATCGAATCTTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   173938 174 +   591668 AACTTGAGTCACGTTTTGCCGTTTGACATTC-----ACCCTTT----------GTTGTACA-----CATTTCTCGATT---T------AGC---GCAATTGATTCATCGCGAGGTTTCGACGAGTGTCTCC--TCCTTCGCAATGTCGCACCTGTACCTCTTTTAAACTTGTTCTTAATCACGGCCTCGTATTT---TTATCGcatcttaa
i caeJap4.Scaffold17934 I 405 I 782
e cb4.chrX              10116132 3411 + 21540570 I

a score=13968.000000
s ce10.chrX              4783685 121 + 17718866 GTTCCTTCTTTGAATACTAAC-AAATTTCGTCAGATTCGTTTTTTGACTGATCCCGAGTGGCCAATTGTTTGAACTGTTTGTTACA----AATGACATCTCTCACTCCTGACCGTAAGTTCATTTT
s caeRem4.Crem_Contig0   1686479 120 -  4500979 GTTGTCTCTTCAAATTCTCAC-AATTTTCGTCAG----CATTGCAGATTTGTCT-CGTTTGTCACTTGGAAACTTTGGTTAGAAAGAGAACATGACGTCGCTGACTCCAGATCGTAAGtttatatt
i caeRem4.Crem_Contig0  C 0 I 164
s caeSp111.Scaffold409     20888 119 -   201088 GTTGATTCATCAAATTCTCACAAGGTTTCCGCaa----tcttttgaatttatttccacttttcaGTTTAAGAACT--ACTGTGACG-GAAGATGACATCTCTTACTGCTGACCGTAAgttcctttt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3041858 121 +  4147112 gttatttcatcaaattctcaGTGAATTTCGTCAG----TTTTGTAGAGGAATTTTCACAATCCGTTTGGAAGATTCGATTGGACAA-GAAAATGACATCGCTGACTACTGAACGTGAGTTTTTATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   174112 782 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I

a score=-1067.000000
s ce10.chrX              4783806  1 + 17718866 T---------
s caeSp111.Scaffold409     21007  1 -   201088 t---------
i caeSp111.Scaffold409  C 0 I 39
s caePb3.Scfld02_0       3041979 10 +  4147112 TTATATTCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   174112 782 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1686599 164 -  4500979 I

a score=599.000000
s ce10.chrX              4783807 37 + 17718866 GAGTTTCAATTAT----------------AAATAGGAAAATATCAATATTTTA
s caePb3.Scfld02_0       3041989 51 +  4147112 GGGTTTC--TTATCTGATTTTGTGGGGAAAAGTAGAAGggtaataatttttta
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold17934   174112 782 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeSp111.Scaffold409     21008 39 -   201088 I
e caeRem4.Crem_Contig0   1686599 164 -  4500979 I

a score=0.000000
s ce10.chrX              4783844 896 + 17718866  
e caePb3.Scfld02_0       3042040  80 +  4147112 I
e caeJap4.Scaffold17934   174112 782 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeSp111.Scaffold409     21008  39 -   201088 I
e caeRem4.Crem_Contig0   1686599 164 -  4500979 I

a score=172.000000
s ce10.chrX              4784740 42 + 17718866 CTTTCGTTCTTAGCAAAATAAGCCAACTAGATACCCTTGTTG
s caeSp111.Scaffold409     21047 36 -   201088 CTTCAGATTTTTGCAGAATGAG------GATTATACTTAAAA
i caeSp111.Scaffold409  I 39 C 0
e caePb3.Scfld02_0       3042040 80 +  4147112 I
e caeJap4.Scaffold17934   174112 782 +   591668 I
e cb4.chrX              10116132 3411 + 21540570 I
e caeRem4.Crem_Contig0   1686599 164 -  4500979 I

a score=300.000000
s ce10.chrX              4784782 1 + 17718866 G
s cb4.chrX              10119543 1 + 21540570 G
i cb4.chrX              I 3411 C 0
s caeSp111.Scaffold409     21083 1 -   201088 G
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3042040 80 +  4147112 I
e caeJap4.Scaffold17934   174112 782 +   591668 I
e caeRem4.Crem_Contig0   1686599 164 -  4500979 I

a score=546.000000
s ce10.chrX              4784783 1 + 17718866 A
s cb4.chrX              10119544 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1686763 1 -  4500979 a
i caeRem4.Crem_Contig0  I 164 C 0
s caeSp111.Scaffold409     21084 1 -   201088 A
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3042040 80 +  4147112 I
e caeJap4.Scaffold17934   174112 782 +   591668 I

a score=33764.000000
s ce10.chrX              4784784 106 + 17718866 TAATAGAGTTCCATATTTCATTCAAAGTACTTTT-TTATTTGCTTTTTCTTTTTGTCCGCTCCTTTTCTACCTACCAAATAATCTTTCGTCAGAGA------CTAT-------GAACGCA
s cb4.chrX              10119545 106 + 21540570 TAATAGGCTACCATATTTCATACAaagtatttttcttttatgtttttttccct--------------ttcactCTCAAGCAATCTTTTGCCTGATGAGAAAAATGCATAGAGAGAACGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1686764 111 -  4500979 taataggCCACAATATTTCATCTAAAGTACttct-ttttatgttttttctcttct--ttcccccTACCTCAATCCCGAGTAATCTTTTGCCAGAGG------ATTTATTGAGAGAACGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     21085 109 -   201088 TAATGGGTAACCATATTTCATCTAAAGTACtttt-ttatatgtttttcccttttt-ctttgctCAACCTTTACTCTGAGTAATCTTCCACCAC---------ATAAGCTAAAAGAACGCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3042120 104 +  4147112 TAATAGACTACCATATTTTATCTAAAGTActtct-ttttatgttttttctttctc------cccACCCTACACTTTAAGTCATCTTCAACCGG---------GTGTACTGAAAGAACGCA
i caePb3.Scfld02_0      I 80 C 0
e caeJap4.Scaffold17934   174112 782 +   591668 I

a score=93380.000000
s ce10.chrX              4784890 126 + 17718866 AGAATGCACTAATTCATCATTTCTTGATGGAAA------GTTGGGACAAAACGTGAGGACGG-AAATTT-CTGTTTCAACAACAGCTGTCGTTGT------GTTGTCTCCATCC-GTCGTCATCTTGT-------------------------CAAGTT-TTTTCTG
s cb4.chrX              10119651 161 + 21540570 AGAATGCACTAATTCATCATTTCTTGATGGGAAAAATTGGGAGGA---AAGCGTGAGGAcagcaaattt-ttgtttcgcCAACAGCTGTCGtcgcaatttttt--tctttttccggGCGTCATCctgtttcttttctctcttcagACTCTTGTCAAGCTCTTTGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1686875 128 -  4500979 AAAATGCACTAATTCATCATTTCTTGATGGGAA------GATGGG---AAACGTGAagacag-aaattt-ttgtttcaacaacaGCTGTCGTCGC------TT--TCTCCTTCC-GGCGTCATCTTGT------------------CTCTTGTCAAACT-TTTGTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     21194 128 -   201088 AGAATGCACtaattcatcatttcttgATGGAGA------GATGGG---AAACGTGAAgacag-aaattt-ttgtttcaacaaCAGCTGTCGTCGC------GT--TTTCCTTCC-GGCGTCATCCTGT------------------CTCTTGTCAAGCT-TTTGTTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3042224 127 +  4147112 AGAATGCACTAATTCATCATTTCTTGATGGAAG------GATGGG---AAACGTGAAGacag-aaattt-ttgtttcaacaacAGCTGTCGTCGC------GT--TTTCCTTCC-GGCGTCATCCTGT------------------CTCTTGTCAAGC--TTTGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   174894 115 +   591668 agaaggcaCTAATTCATAACTTTTTGATAGAGA------GATGGG--------------CAA-AAATTTGTCGTTTAAACAAcagctgtttttat------tttcttttctttc-cctttctttcctt------------------ttcttttt------ttttttg
i caeJap4.Scaffold17934 I 782 I 229

a score=41639.000000
s ce10.chrX              4785016 61 + 17718866 AATGTCAGCAAGGCGTTAGTATTCATGA---AACAGAGCTGGAGAAGAAAATTTTGATAATGTC
s cb4.chrX              10119812 58 + 21540570 AATGTCAGCAAGGCGTTAGTATTCATGAAACAACACtgc------aaaacattttgataatgTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1687003 55 -  4500979 AATGTCAGCAAGGCGTTAGTATTCATGA---AACACTGC------AGAACATTTTGATAATGTC
i caeRem4.Crem_Contig0  C 0 I 158
s caeSp111.Scaffold409     21322 55 -   201088 AATGTCAGCAAGGCGTTAGTATTCATGA---AACACTGc------aaaacattttgataatGTC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3042351 61 +  4147112 AATGTCAGCAAGGCGTTAGTATTCATGA---AACACTGCTGcagaagaactttttgataatgtA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175009 229 +   591668 I

a score=-5432.000000
s ce10.chrX              4785077 33 + 17718866 GCACAAAGTGCAATTTTTG-TTTGAAAAA-----------------AGTTG
s cb4.chrX              10119870  9 + 21540570 --------------------AACGGAAGG----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     21377 31 -   201088 --ACCGAG-ACAAACATTG-AATGACAAA----------------AAGTTG
i caeSp111.Scaffold409  C 0 I 293
s caePb3.Scfld02_0       3042412 48 +  4147112 --ACTGAG-ACAAACATAGAAatgacaaacttttttgtagtatACATGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175009 229 +   591668 I
e caeRem4.Crem_Contig0   1687058 158 -  4500979 I

a score=-35505.000000
s ce10.chrX              4785110 642 + 17718866  
s cb4.chrX              10119879 489 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3042460 404 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175009 229 +   591668 I
e caeSp111.Scaffold409     21408 293 -   201088 I
e caeRem4.Crem_Contig0   1687058 158 -  4500979 I

a score=822.000000
s ce10.chrX              4785752 20 + 17718866 --CATTTCAGTTGTAATATTTT
s caeRem4.Crem_Contig0   1687216 18 -  4500979 --CATTTCAGAGGGAATATT--
i caeRem4.Crem_Contig0  I 158 C 0
s caePb3.Scfld02_0       3042864 22 +  4147112 TCTTCTTTGGATGTGATATGTT
i caePb3.Scfld02_0      C 0 I 139
e caeJap4.Scaffold17934   175009 229 +   591668 I
e cb4.chrX              10120368  0 + 21540570 C
e caeSp111.Scaffold409     21408 293 -   201088 I

a score=-8183.000000
s ce10.chrX              4785772 152 + 17718866 ATTCAAAATTAACTTTAAATAAGCTATTTTATGGTGTGATTTATAACATTTCATACAAATTTTTTATGCC---TGGCAACATCTGACTTGCGACCTGTGGCAAGAG-----CACTGACCTTTTCCTGCCCTCTTGAATACATACATTCCGCCTTGAACT---------------A
s cb4.chrX              10120368  80 + 21540570 ----------------------------GCATACATTACCCTAGAATCGCCC-----TATATTTCACGCT---AAGCTTCACAT---------TC----------------CACCAATCCACCCTCGCA-----------------TTCATTCTAAG-----------------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1687234 151 -  4500979 ----AATATTAA--TTAGACAA--TAACTCGTGTATTTACTTTAaacagaac-----aattttttgttctataAAACTTCACTTGACTTTTGCTCCGGAAGCAATGTTAGACATTAACCTAGCCTTGCCC-----------TATATTTCATGCTTAGCTTCACATCTCATTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3042886 139 +  4147112 I
e caeJap4.Scaffold17934   175009 229 +   591668 I
e caeSp111.Scaffold409     21408 293 -   201088 I

a score=-2172.000000
s ce10.chrX              4785924 8 + 17718866 ATTTG---GCC
s cb4.chrX              10120448 5 + 21540570 AATTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1687385 5 -  4500979 TTCTG------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3043025 8 +  4147112 ATTCGGAC---
i caePb3.Scfld02_0      I 139 C 0
e caeJap4.Scaffold17934   175009 229 +   591668 I
e caeSp111.Scaffold409     21408 293 -   201088 I

a score=3415.000000
s ce10.chrX              4785932 13 + 17718866 CGGGCCACATGCA
s cb4.chrX              10120453 12 + 21540570 CTAGTCACATTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1687390 13 -  4500979 CCTGCCACTTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     21701 13 -   201088 CAGCCCACATTCG
i caeSp111.Scaffold409  I 293 C 0
s caePb3.Scfld02_0       3043033 11 +  4147112 --AGCCACATTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175009 229 +   591668 I

a score=244311.000000
s ce10.chrX              4785945 335 + 17718866 GCTCAAAGAATGTGTCAATGAGCCAATAAATCCATGCA-----TTTT--TG-CCTCTGGCCAACGGGG------------CCCCCAAAACG-------GAGGAGCGCGCCTTCT----CCGCCTATGATGTCTCCGCCCATTTTCACAGCTCGCTGAGCAAAACATAGGCACGACACATACTCAAAAGAGCATCTGCCCTCGGTCGCCCCTCCAAACTTCTCTACT---TTGCTAAGTTTGTTTGTGTGTGTGCTTCC----TGAAGTGATTAATTGTATTATTCAATTATTGATAAAT------AATGACTGCTATTGCTAGCCCAGTAAATCATGATATTATTTGCCAGAGATATGTGCTAGACGATTTACGTAAGT
s cb4.chrX              10120465 350 + 21540570 ------AGAATGTGTCAATGAGCCAATAAATCCATgcatttctttttcctt-tttatgg--AACCGGGACCAGCACCCCTCCTCT--AACGGGAGAGAGAGGAGCGCGCCTTCTCCTCCCGCCTATGATgtctccgcccattttcacAGCTCGCTGAGCAAAACATAGGCACGACACAAACTCAAAAGAGCATCTGCCCTCGGCTCCTCCTTCCAACTTTTC--CT--------------ACCCGTGAGCTTGCTTCCAGACTGAGATTATTATTATTACTCTTTCATCACTGA--ACTCACTAAAATGACTGCTATCGCCAGCCCAGTCAATCATGACATCATTTGTCAGCGATACGTGTTGGATGATCTCCGTAAGT
i cb4.chrX              C 0 I 208
s caeRem4.Crem_Contig0   1687403 316 -  4500979 GCTCAAAGAATGTGTCAATGAGCCAATAAATCCATGCA-----TTTTGCTT-CTCGTGGTCGGCCGGA------------CCCCT--AACG-------GAGGAGCGCGCCTTCT----CCGCCTATGATgtctccgcccattttcacagCTCGCTGAGCAAAACATAGGCACGACACATACTCAAAAGAGCATCTGCCCTCAG---CTCCTTCAAACTTTCC--CT---TTGA-------GTTTGTGAGTGTATTTCCTGAGTGAGAATATCA---------CTTCATCATTTG--AAT------AATGACTGCTATTGCAAGCCCGGTTAATCACGACATCATCTGTCAACGATATGTGTTGGATGACCTCCGTAAGT
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold409     21714 308 -   201088 GGTTGAAGAATGTGTCAATGAGCCAATAAATCCATGCA-----TTTTGCCTGCCTCTCG-TTGCGGGA------------CCTCT--AACG-------GAGGAGCGCGCCTTCT----CCGCCTATGATgtctccgcccattttcacAGCTCGCTGAGCAAAACATAGGCACGACACATACTCAAAAGAGCATCTGCCCTCGG---CTTCTTCAAACTCTTC--CT---TCA----------TTGTGTGTTTGCTTCC----TGACGTTATTA---------ATTTATTACTGA---AT------AATGACTGCCATCGCCAGCCCGGTTAACCACGACATCATCTGTCAAAGATATGTGCTGGATGATCTTCGTAAGT
i caeSp111.Scaffold409  C 0 I 150
s caePb3.Scfld02_0       3043044 303 +  4147112 GCTCAAAGAGTGTGTCAATGAGCCAATAAATCCATGCA-----TTTTGCCT-CCTCTT--TTCCCGGA------------CCTCT--AACG-------GAGGAGCGCGCCTTCT----CCGCCTATGATgtctccgcccattttcacAGCTCGCTGAGCAAAACATAGGCACGACACATACTCAAAAGAGCATCTGCCCTCGG---CTCCttcaaactttct--ct---tt----------------tGTGTGCTTCC----TGAAGAGATTA---------CTTTATTACGGATTCAT------AATGACTGCAATTGCAAGCCCTGTCAATCATGACATCATCTGCCAGAGATATGTTCTAGATGACTTACGTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   175238 299 +   591668 GCTCACAGAATGTGTCAATGAGCCGATGAATCTATGCA-----TTTCTTCT-CTT-------------------------CGTTG--GTCC-------AGGGAGCGCCCCCTCT----CCGTCTGTGATgtctccgcccattttcacaGCTCGCTGAGCAAAACATAGGCACGACACATACGCAAAAGAGCATCTGCCCTCGC---Ctgctttaaatttttc--ctaGCTAGCTAACTTTGAACGAGAATTTTTGTCT----------GATTA---------TTCTATCA------AAA------AATGACTGCCATTGCAAATCCAGTGAATCACGATATTATATGCCAGCGATACGTTTTGGATGACCTTCgtaagt
i caeJap4.Scaffold17934 I 229 I 189

a score=-1360.000000
s ce10.chrX              4786280 10 + 17718866 ATACTTTTCT-------
s caeRem4.Crem_Contig0   1687727 10 -  4500979 ATACAAATGT-------
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0       3043347 10 +  4147112 -------TATCTTCTTT
i caePb3.Scfld02_0      C 0 I 187
e caeJap4.Scaffold17934   175537 189 +   591668 I
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I

a score=865.000000
s ce10.chrX              4786290 45 + 17718866 GAAATTTTTTTGAATCAAAGAAAAT--------------AATAACTTAAAATTTGACAA
s caeRem4.Crem_Contig0   1687737 59 -  4500979 GCATTGGTGGTAGGGCACAGAAAATCTACTGATTGCCACGATCACTTAAAGTTTGACAA
i caeRem4.Crem_Contig0  C 0 I 116
e caePb3.Scfld02_0       3043357 187 +  4147112 I
e caeJap4.Scaffold17934   175537 189 +   591668 I
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I

a score=0.000000
s ce10.chrX              4786335 553 + 17718866  
e caePb3.Scfld02_0       3043357 187 +  4147112 I
e caeJap4.Scaffold17934   175537 189 +   591668 I
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I
e caeRem4.Crem_Contig0   1687796 116 -  4500979 I

a score=318.000000
s ce10.chrX              4786888 8 + 17718866 ACTAAAAA
s caeJap4.Scaffold17934   175726 8 +   591668 ACTAAACT
i caeJap4.Scaffold17934 I 189 C 0
e caePb3.Scfld02_0       3043357 187 +  4147112 I
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I
e caeRem4.Crem_Contig0   1687796 116 -  4500979 I

a score=465.000000
s ce10.chrX              4786896 19 + 17718866 -TTGCTT--TTTAGACTTTTAT
s caeRem4.Crem_Contig0   1687912 19 -  4500979 -TTGATT--TTAATACTTCCTT
i caeRem4.Crem_Contig0  I 116 C 0
s caeJap4.Scaffold17934   175734 22 +   591668 TTTCGTTAGCCTACacttttta
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3043357 187 +  4147112 I
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I

a score=657.000000
s ce10.chrX              4786915 3 + 17718866 ATA
s caeRem4.Crem_Contig0   1687931 3 -  4500979 CTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3043544 3 +  4147112 ATA
i caePb3.Scfld02_0      I 187 C 0
s caeJap4.Scaffold17934   175756 3 +   591668 aca
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10120815 208 + 21540570 I
e caeSp111.Scaffold409     22022 150 -   201088 I

a score=-1613.000000
s ce10.chrX              4786918 5 + 17718866 -CTTCA
s cb4.chrX              10121023 5 + 21540570 -CTtct
i cb4.chrX              I 208 I 7
s caeRem4.Crem_Contig0   1687934 4 -  4500979 --TTCA
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3043547 4 +  4147112 --TTCG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   175759 4 +   591668 attt--
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     22022 150 -   201088 I

a score=62193.000000
s ce10.chrX              4786923 64 + 17718866 TATTTCTTTTATATAGTGCTTTATAGTACT--TCTAGACGAACATCTAAAATAAACAAATTCG-CCT-
s cb4.chrX              10121035 63 + 21540570 --ttttttctatataGTGCTTCGTAGTAGT--TCTAGACGAACATCtaaaataaacaaatttgAGTT-
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1687945 63 -  4500979 TATTCTTTCCGTATAGTGCTTTGTAGTAGT--TCTAGACGAACAtctaaaataaacaaattc--aCT-
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409     22172 65 -   201088 tATTCTTTCTGTATAGTGCTTTGTAGTAGTGCCCTAGACGAACATCTAACATAAACAAATTC--ACT-
i caeSp111.Scaffold409  I 150 C 0
s caePb3.Scfld02_0       3043552 65 +  4147112 TATTATTTCTATATAGTGCTTTGTAGTAGTGCCCTAGACGAACAtctaaaataaacaaattc--aCT-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   175763 62 +   591668 --tttgtttcgtatAGTGCTCTGTAGTAGT--CCTAGACGAACAtctaaaataaacaaattc--aCTT
i caeJap4.Scaffold17934 C 0 I 332

a score=87525.000000
s ce10.chrX              4786987 294 + 17718866 GATCCTTGCTTCT---------------T-CTC-----TTCCCATCGTGCTTTTTCCT--------GACT---TTC----CTGCCTCTT--TCCT--CGAAAATGTGGAAATCATAACTCAGTTATAGTGTCAAGTTACCC-AAAAAAAACTTTTGTGTCGTCATCCCCAAATGTTTCATCTGTTTTC--TTT---------CTTGCTCTCAACAAAGGGCAACAATGCGTGAATGTGTTGCTCCAATCATCAGC-----------CCTCTCGCCCTGCAAACCGAGA--------------TCTTTCCTAATTGGG--AAACGAAACTTTGCGGAGAATGGGTTGGGAGAGGGTGCAACACACACAAAATTG
s cb4.chrX              10121098 277 + 21540570 GAGCCCT--CTCG---------------T-CTTTCACATTTGCGACGTGCCTTTTTATATAATGT-GCTT---TTC--------------GCCCTTCAGAACATGTGGAAGTCATAAATCAGTTATAGTGTCAAGttacttctgaaaaaag-ttagtgTCGTCATCC---------CAAACTTTTATC----TTCATGCATCTCTTCTCTCAACGAAGGGC---------AGGGTGTGTTACCCCAATCATC-GCAAGGGATGGAATTTTTTGCACtgagctt--------------ttttttccatccaAATTGGG--AAAC----TTTTTTCG-----GGCT---------GTGCA--ACACACAAAATTG
i cb4.chrX              C 0 I 194
s caeRem4.Crem_Contig0   1688008 295 -  4500979 GAgcctttcctct---------------t-ctt-----cttgcGACGTGCA--TTTATATAATgt-gctc---ttcttctcttcctcttaACTCCTCGGAACATGTGGAAGTCATAACTCAGATATAGTGTCAAGTTACCC---AAAAAAC-TTAGTGTCGTCATTCCCTTCAACACCaacttttatc----t---------ttttctctcaaagaAGGGCAACATT--GAGAATGTGTTG--CCAATCATC-GC----------ATTCTCTGCAGTGAGCCTCTAGA-TGGG-AAActcttttcttccaaattgGG--AAAC----TTTTGCGAAGAATGGGT---------GTGCA--ACACACAAAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22237 305 -   201088 GATCCTTCCTTCT--------TGCTCTCTGCTT-----TTTGCGACGTGCgcttcaaaataatatttctcACACTC----TTTCATCTAAACGCT--AGAACATGTGGAAGTCATAAATCAGTAATAGTGTCAAGttaccc-aaaaaaaac-ttagtGTCGTCATTCGGTTTCACTCCAACTTTtatctgttt---------ctttctctcaacaAAGGGCAACATT--GAGAATGTGTTT-CCCAATCATC-TC-----------TTTTCTGCACTG-------AGACTCGGCAGAGAATTTCTTTCCAAATTGGGAAAAAC-----TTGGCAAAGAATGCGT---------GTGCA--ACACACAAAATTG
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3043617 307 +  4147112 GATCCTTCCTTctgcttttccttctttct-ctc-----tttgcGACGTGCGTTTT--TATAATGTGGCTC---TTC---GTTTCCTCCTAACTCT--GGAACATGTGGAAGTCATAACTCAGTTATAGTGTCAAgttaccc-aaaaaaaac-ttagtgTCGTCATTCCGTTTCACGCCAACTTTTATC----T---------CTTTCACTCAACAAAGGGCAACATT--GAGAATGTGTTG--CCAATCATC-TC-----------TTTTCTGCAGTGAGCCTCTAGACTCGG-GGAGAAAATTTGTCCAAATTGGG--AAAC-----TTGGCAAAGAATGGGT---------GTGCA--ACACACAAAATTG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   175825 332 +   591668 I

a score=-1963.000000
s ce10.chrX              4787281 106 + 17718866 ggtacttgtgtattatttcccctcattttttaaaatataattttaaataaaaacgtgtggagtttttgttttttaggcttaggaaataaccatttctaagcctaaa-------------
s caeRem4.Crem_Contig0   1688303  90 -  4500979 ---------CTATAATTTGGTCT---------GCAAATAACTTTAATAGCGGACAC----------TTTTTTGTGGGCGGAGG-GAGGACAAAGTAATACCATAAATCAGTTCAAAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22543  76 -   201088 ----------AGTAATTTGAGCA---------GAAAATAACTCTACAGGAGCACCC---------ATTTTTTGTGGGTGGAGG--AGGACAATGTAATGCCATAAA-------------
i caeSp111.Scaffold409  I 1 I 104
s caePb3.Scfld02_0       3043925  55 +  4147112 ----------AGTAATTTGGTCT---------GCAAATAACTCAACAGGAGAATTC---------TTTTTTAGTTGGTGGATA------------------------------------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   175825 332 +   591668 I
e cb4.chrX              10121375 194 + 21540570 I

a score=-735.000000
s ce10.chrX              4787387 17 + 17718866 gatggaaaatggacatc
s caeRem4.Crem_Contig0   1688393 17 -  4500979 GATGAGAACCAGAAATC
i caeRem4.Crem_Contig0  C 0 I 45
s caePb3.Scfld02_0       3043980 11 +  4147112 --GGAGGACAATG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175825 332 +   591668 I
e cb4.chrX              10121375 194 + 21540570 I
e caeSp111.Scaffold409     22619 104 -   201088 I

a score=-709.000000
s ce10.chrX              4787404 78 + 17718866 acgttttattaaaatggataatatta-aaatgaggggaaataatacacaagtaccCAAAATTGCAGTAATTTTGCGAGG
s caePb3.Scfld02_0       3043991 47 +  4147112 ------------------TAATGCCataaatcagctcaaaaaagatg-aagaaccaaaaattgaga-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175825 332 +   591668 I
e cb4.chrX              10121375 194 + 21540570 I
e caeSp111.Scaffold409     22619 104 -   201088 I
e caeRem4.Crem_Contig0   1688410 45 -  4500979 I

a score=-4918.000000
s ce10.chrX              4787482 61 + 17718866 --------TTCGGTCATTTTTTGTGTGGGAGGAGGACAAACTAATGTCATAAATCAACATCAGAAGTGT
s caeRem4.Crem_Contig0   1688455 51 -  4500979 --------TTCGTCTATTTTAAATCTGAGAAT-GGAGGGATTG-----ACAAGT---TGTAATAAGTG-
i caeRem4.Crem_Contig0  I 45 C 0
s caePb3.Scfld02_0       3044038 27 +  4147112 agacatTTTTCGC------------------------------------------CCTATCCCAGATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175825 332 +   591668 I
e cb4.chrX              10121375 194 + 21540570 I
e caeSp111.Scaffold409     22619 104 -   201088 I

a score=-18784.000000
s ce10.chrX              4787543 72 + 17718866 CATTTTTAGTCCAA-AAATAGAAATAAACACTACTTCCTGGTAAATCAAACTTTGAAAAAAGGTG------------CATGTATA---------
s cb4.chrX              10121569 43 + 21540570 -----------TCA-ACAAGGAAGTA---------TTATAGCAGG---------CCAATTGAAAC------------CATTATTT---------
i cb4.chrX              I 194 C 0
s caeRem4.Crem_Contig0   1688506 39 -  4500979 -----CATTTCTCAGACACGGAAGTA-------CTTTCTGGTA----------------------------------CGTAGGTG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22723 35 -   201088 ------CATTTTTA-ACATGCAA-------------------------------CTGAATGTGTT------------CCCGCTTT---------
i caeSp111.Scaffold409  I 104 C 0
s caePb3.Scfld02_0       3044065 78 +  4147112 --------TTTTCA-ACGCGGAAGTA-------GTTCCAAACAACCTTTGCATTCTAAATATGACGTTAAAATGCAGCCCACGTATACCAAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   175825 332 +   591668 I

a score=1221.000000
s ce10.chrX              4787615 50 + 17718866 --ATATTGCATATGACACCACT------------------------------ATACAACACTTGTCAGAG--------TTAATTGAATTT
s cb4.chrX              10121612 80 + 21540570 --CCAGTGCAAACTacatgaatttcagaagaactgcttaacaaaaatattttgtttggCACTTTCACTCT--------TTAATTAAAATT
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1688545 72 -  4500979 --TTAGATCATACTACA----------------CATCTAGCATGGAACTTTTTTCCCGAGTTAACACACTGGCCGACGTTAATTGAATTT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409     22758 69 -   201088 --TTGGTTCAAACTACAGAACT-----------GACCGGACAATTACTAAAAACTTGGCACTTGTCAGag--------ttaattgaattt
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3044143 69 +  4147112 --TCAGTTCAAACTACACGAGA-----------AAcctgaacaaaaattcaagttcGAAACTTGCCAAAC--------TTAATTGAATTT
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17934   176157 53 +   591668 ATGTAGTACATAGAACT----------------GGTCTGCAA-------------TGGCACTTGTCAAAG--------TTAATCGAATTT
i caeJap4.Scaffold17934 I 332 C 0

a score=-14287.000000
s ce10.chrX              4787665 57 + 17718866 ---------TGAAAAACACCAC---------------CCCACTCCCTTTATGTCCTCTCCTTC------------CATTCTTTTTCTTCTCAA-
s cb4.chrX              10121700 13 + 21540570 ---------GGAAAAAGCTCAT------------------------------------------------------------------------
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   1688621 13 -  4500979 ---------TAAGAAACCTCAT------------------------------------------------------------------------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold409     22830 16 -   201088 ---------cAAGAAACCTCATTTC---------------------------------------------------------------------
i caeSp111.Scaffold409  I 3 C 0
s caeJap4.Scaffold17934   176210 94 +   591668 TTGCGACACCGACCGACCAcaaccaattttttgttacTTCAATCTCTTCTCGCTCGCTCGCTCGCTCGCCcacttctttatttttccccCTATC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3044212 17 +  4147112 I

a score=19649.000000
s ce10.chrX              4787722  90 + 17718866 ---TAGGAATGGGTACTCGTGTACTTTGGTCAGTTGTTTTAATTAAGCT--TAACTGTATCTTCCATC----------------GTTTTCTTT------TAGTTCCAAACAAAACTG-
s cb4.chrX              10121713 110 + 21540570 ---TTAAAACAAGTGCTTCCGTACTTTGGTCGCTTGTTTTAATTAACCCGTCAACCGTATACTTGTT---TCCCATACTTTAG-CTCTTTTTGAAAGCATACATCCACACAAAAATG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1688634 104 -  4500979 ---TTAAAATGTGTTTGCTTGTACTTTGGTCATTTGTTTTAATTAAACC--TAACAGTATTCTTCTTCA-TTGCCCACTTTAG-CTCTTCTTT------TAGTTTAAAGAAAGGATG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22846  97 -   201088 -------GGAGGGTTCTCTTGTACTTTGGTCACTTGTTTTAATTAA------AACTGTATTCAcattcattttcccatttcgGAATCTTCTTT------TAGTTTCAAGCAC-AATG-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044229 103 +  4147112 ----TAAGAAGGGTTCTCGTGTACTTTGGTCGGTTGTTTTAATTAGGCC--TAACAGTATTCCTTTTCATTGGCTCATTTcgg-ttcttcttt------ttgtttcaagacA-AATG-
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17934   176304  75 +   591668 CAGCAGAAAGTACTCTTTCTGGACTTTAATCGTTTG-TCTAATTAAACT--CAACTG---------------------------------TTT------CGGTGTTGAACAA-AACGG
i caeJap4.Scaffold17934 C 0 I 44

a score=-409.000000
s ce10.chrX              4787812 25 + 17718866 CCCCCTCCCCGTCTTAGTACAGCT-------G
s cb4.chrX              10121823 24 + 21540570 --------TAGGCGTAGTGTTTTGTTGGCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1688738 11 -  4500979 --------TAGGCGTAGT-------------G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22943 16 -   201088 --------TAGGCGTAGTTCTGA--------G
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044332 16 +  4147112 --------TAGGCGTAGTGCAGT--------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176379 44 +   591668 I

a score=59603.000000
s ce10.chrX              4787837 90 + 17718866 CAATTCCACAGGGG-CACATTCTTCAGTGCTCCTATCTCGA-GTCATGCGCGATAGGTGAAACAGAGAGCCGAGGAGGTTCCAGAAGAGCAA
s cb4.chrX              10121847 85 + 21540570 CTATTCCACAGGGGACACATTCTTCAGTGCGCCTCTCCTATCGCAAA--GAGATAGGTGAAACAGAG-----AAGAGGTTCCAAAAGAGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1688749 81 -  4500979 CAATTCCATAGGGG-CACATTCTTCAGTGCGCCTATCCAAT-GCCAT--ACTATAGGTGAAACAGAG-------GAGGTTTCAAAAGAGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     22959 89 -   201088 CAATTCCATAGGGG-CACATTCTTCACGGTGCCTATCCCGGACCCAT--ACTATAGGTGAAACTGAGAGCGGAGGAGGTTTCAGAAGAGCAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044348 89 +  4147112 CAATTCCACAGGGG-CACATTCTTCAGTGTGCCTATCCGGGAGCCAT--ACTATAGGTGAAACAGAGAGCGGAGGAGGTTCCAGAAGAGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   176423 87 +   591668 CAATTCCACAGGGA-CACATTATTCAGGGCACACGCTTTGTTAGGAG--ACTATAGGTGAAGCAGAA-ACATAAAGGTTCTTGAAAGACCA-
i caeJap4.Scaffold17934 I 44 C 0

a score=18881.000000
s ce10.chrX              4787927 40 + 17718866 -----AAGGCCATCCTTTTGTTTTATG-----TGAGGAGATCTTTTGCAA
s caeRem4.Crem_Contig0   1688830 37 -  4500979 -----ACGGCCATCCTTTTGTTTTATG--------GGTGCTCTTTTGCaa
i caeRem4.Crem_Contig0  C 0 I 147
s caeSp111.Scaffold409     23048 37 -   201088 -----AAGGCCATCCTTTTGTTTTATG--------GCAGTGCTTTTGCAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044437 37 +  4147112 -----AAGGCCATCCTTTTGTTTTATG--------GATGCTCTTCTGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   176510 50 +   591668 AACGGATGGGCATCTTTTTGTTTTATGGGAAGGGAGCCAGGCACTTGCAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10121932  0 + 21540570 C

a score=-2927.000000
s ce10.chrX              4787967 20 + 17718866 TGC-------AGAAATGAAATAGAGGG
s caeSp111.Scaffold409     23085 26 -   201088 AGCAAACGGGAGGAaaggaaaata-aa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044474 26 +  4147112 ACCAGGGCAAAGGAAGGCAATATA-AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   176560 20 +   591668 ---AAACTGAAGGAAGCAAAGGG----
i caeJap4.Scaffold17934 C 0 I 562
e cb4.chrX              10121932  0 + 21540570 C
e caeRem4.Crem_Contig0   1688867 147 -  4500979 I

a score=-3382.000000
s ce10.chrX              4787987 46 + 17718866 GTTTGAGCCAAAATAAATAGGCGGTTTTGGTAAGATTTTGCAAGGG
s caeSp111.Scaffold409     23111 17 -   201088 gattG---------GAGTAT--GGT------------------tgt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044500 36 +  4147112 GCAAGAACCAGAAAAAGTAG--GGCC----TAAGATTT----GTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176580 562 +   591668 I
e cb4.chrX              10121932  0 + 21540570 C
e caeRem4.Crem_Contig0   1688867 147 -  4500979 I

a score=-13054.000000
s ce10.chrX              4788033 128 + 17718866 AAAAACAATGAAACCTTTTCTGAATAACTGAAAAAACTAGATATAGGCGGTACCTGTTATCGATTTTTTTTTGTGAACAGTTTTTTTTAGATGTAATTGAAAATGCAACACTTGCGAATTTTCCTATT
s cb4.chrX              10121932  53 + 21540570 ---AAGGACAAGAGCCTTTTCTTTTATTTGTCGGA---AGACAT------------------------TTCTAGAAGCGATCA---------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     23128  60 -   201088 ggaaatg--aaa-------------atctgATGTA---AAACATCAAC---------------CTTTGTTCTATc--caatcttt---------------------------------tttccctatt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044536  28 +  4147112 GGAAATAATAAA-------------ATCTGATCTA---AGACAC------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176580 562 +   591668 I
e caeRem4.Crem_Contig0   1688867 147 -  4500979 I

a score=-6712.000000
s ce10.chrX              4788161 129 + 17718866 AGAGTTGTTGGCACAATGATCTACTTTCACGGCATATATCTCGGTTGTCTTTACTTTTGGAAAAAAAAGTTCTACTACTAAAATATAGAAAAATATTTTTAACGTATTTTGTTAGTAAGAAATTTTTGA
s cb4.chrX              10121985  66 + 21540570 -------TTGAAATCAGAATCTCCTCTGGTTGTGTAGA----------------------------------------------ATTGAACATCA----------ACCTTCGTCGTATCCAATTTGCGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3044564  42 +  4147112 ------CACAAGGGTTCGATCTCTTTTCCCTCTATA-----------------------------------------------------------------------TTTGGTCGT----------TGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176580 562 +   591668 I
e caeSp111.Scaffold409     23188   0 -   201088 C
e caeRem4.Crem_Contig0   1688867 147 -  4500979 I

a score=-8933.000000
s ce10.chrX              4788290 170 + 17718866 TACAACCACTGAGAACCGAGAGGGGACATG--------TAATAAAAAAAACTGCCACCAATTTCAATCTAAATGAAACCAAATGATAGGATCTTTTTTTTTAATGACCATTTCTTCTGGTATCTCAGAGTGAAAATTGATTCTTAATCGTTGAAACTAGCTTGGCTCCGACTAACAAA
s cb4.chrX              10122051  67 + 21540570 -----TCGTTG----------------ATGTCGCGTCCCcgtcaaacaaaaaatggacaa-----------------------------atcTTTTGCTCTCGCTA-------------------------------------------------------------CGACTAACAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     23188  53 -   201088 tGTGATCATTG----------------ATG--------TTGTCACACAAACTAGCCATAA-----------------------------ATTCTTTGCTCGCTTCA------------------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044606  41 +  4147112 ----------------------------TG--------CCGTCAAACAAACTAGCCATAA-----------------------------ATTCTTTGCTCGCGCCA------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176580 562 +   591668 I
e caeRem4.Crem_Contig0   1688867 147 -  4500979 I

a score=59334.000000
s ce10.chrX              4788460 154 + 17718866 AAAAACGTTTACTTTAATCGAATTGAGTCGCGCATGT-CCCGGAAAGGTCTTGAATC-AACCTTCTTAATCGAATTGGAATTTGGTGACTTCATGACGCGTTT-TCTATAC----------AAAGAATGG--CTATTT---TAAATGTGCGACGCCGAT-TTTTTGTGATGAA
s cb4.chrX              10122118 148 + 21540570 ----ACGTttattttaattgaattgaGT--CTCTCGCGCCCGGAAAGGTCTCGAATC-AACCTTCTTAATCGAATTGGAATTTGGTGGCTTTGTGACGCATcctttcttccttcttttctcttttttttg--ttcattttgta--------------G--GATATGTGATTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1689014 151 -  4500979 AGAAACGTTTATTTTAATTGAATTGAGT--CCCATGC-CCCGGAAAGGTCTCGAATCAAACCTTCTTAATCGAATTGAAATTTGGTGACTTTATGACGCATCGATACATCC---------------AAGG--CTATTTCTGAATAGAAAGAAAGTGGG--AAGACGTGATTTT
i caeRem4.Crem_Contig0  I 147 C 0
s caeSp111.Scaffold409     23241 154 -   201088 AGAAACgtttattttaattgaattgagT--CCCATGT-CCCGGAAAGGTCTCGAATC-AACCTTCTTAATCGAATTGGAATTTGGTGACTTCATGACGCATCTATCCATAC----------TAAAACAGAGTCTATTTATATAGA--ATCTCTGTCGAC-AAAAcgtgat--t
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3044647 153 +  4147112 AGAAACGTttattttaattgaattgaGT--CCCATGC-CCCGGAAAGGTCTCGAATC-AACCTTCTTAATCGAATTGGAATTTGGTGACTTCATGACGCATCTGTATATA------------AAACCCGG--CTATTTATAAAAACCATCAGTTTCGGTGAGGAcgtgat--t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   176580 562 +   591668 I

a score=5546.000000
s ce10.chrX              4788614 135 + 17718866 TTGAAAAC-AGAAAGTATCTG----------------AGGGC----AACTGAGATAAATTTTCAATTTTCATTCATGTCCGTAGGCGTTTTG-------TTTCGG--------CTCTTAGAGCAAAGAATAGGCAAACTTG-------AAAAGAAAAAGAAAGAGCTAACAAT-GTTTT
s cb4.chrX              10122266 157 + 21540570 CAAAACCG-CAAGGGTTTTCAGGATGAGCAGCAAGAatggga---aaaagaagatgaatt-----TATTCATTCATGTACA---ACGATGTG------CTTTTAC----TGCACCCCTAGAGCAAAGATTTTAGCGGGTAGagagggagaaaaaagaacaacatACTAACAAATGTTTT
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1689165 149 -  4500979 TAGAACAT-GAAGGGTTTTTC--Atgcagaagaaaaatggg-----aaagaagATGAATT-----TATTCATTCATGTACGTCCTCATTTTG------CTCTTATTTTGTGTAGTCCTAGAGCAAAGCTTATTGAAACTAG-----------AAAACACTTTGTGGGAACAAGTGTATT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     23395 130 -   201088 ctgaaaat-aactaAGATTTA-----TGGAGCAAAGATGGGG----GAAGGAGatgaatt-----tattcattcatgTACGTCCGCATTTTG------CTCTCAG--------AGTTTAGAGCAAAGAAT--------TTG-----------AGAGAACAAAGCACTAACAAC-GTTTT
i caeSp111.Scaffold409  C 0 I 31
s caePb3.Scfld02_0       3044800 143 +  4147112 ctgaaaacaaaataagatGTC-----CTGAGCAGAAGGGAggc-aagaagaagatgaatt-----tattcattcatgTACGCCCGCAGTTTGCTCTCACTCTCAG--------AGCGTAGAGCAAAGAATTC-----GTTG-----------TTAGAACAAGGCACTCACTAA-GTTTT
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   177142  94 +   591668 ------------------------ttgagagcaaaaagaGCGCGGGGAGAAGGGTGGATT-----TATTCATTCATGTATGTCCTCATTGTG------CTTTCAC-------------AAAGTAAAGATT----------------------AGCATGCAAAGG---------------
i caeJap4.Scaffold17934 I 562 C 0

a score=-785.000000
s ce10.chrX              4788749 26 + 17718866 GTGAAAAATAAAAAATTCTGTGGTGA
s cb4.chrX              10122425 19 + 21540570 CGGGAGAAAGAAGCTGtac-------
i cb4.chrX              I 2 I 7
s caeRem4.Crem_Contig0   1689316 19 -  4500979 GGGAGGAAAAAAGACATCA-------
i caeRem4.Crem_Contig0  I 2 I 4
s caePb3.Scfld02_0       3044956 19 +  4147112 gtgaaaaaaaacgaggaaa-------
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17934   177236 19 +   591668 GAGAAACAAAAAGTGGAGA-------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     23525 31 -   201088 I

a score=158412.000000
s ce10.chrX              4788775 184 + 17718866 GAGTAAAAACAAAGTAATGAATT----------ATTTTCAGAACTCTCAGAGACTTTTGACCTTTTGGATGTTGACAAAGATGGGCGGCTTTCGCGGAATGAAATCGCTGCTCTTCTGAGAACTATCAATGTGGAGCCAACTCGCGTGGAGTTGGACTTCATTTTTGGAGAAATGGATACAGATAGTAAGTTTA
s cb4.chrX              10122451 172 + 21540570 aaacaaaaaaaaagacg----------------attttcagaactctcGGAGACATTCGACCTTCTTGACGTCGACAAAGACGGTCGTCTTTCACGTAATGAGATCGCTGCACTTTTGAGAACCATCAATGTTGAGCCCACCCGTGTCGAATTGGATTTCATCTTTGGAGAGATGGATACCGATAGTA------
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1689339 171 -  4500979 -------AATATATGCA----------------CATTTCAGAACTCTCTGAGACATTCGACCTTCTTGATGTCGACAAAGACGGTCGTCTTTCACGTAACGAGATTGCTGCTCTTCTGAGAACCATCAATGTTGAGCCAACTCGTGTCGAATTGGACTTCATCTTTGGAGAGATGGACACGGACAGTAAGTTCA
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold409     23556 192 -   201088 gaataaaaaagcATTTG--AATTATGAAAGAGATATTTCAGAACTCTCCGAGACATTCGATCTTCTTGACGTCGACAAAGATGGTCGTCTTTCACGTAACGAAATCGCTGCTCTTCTTAGAACTATCAATGTTGAGCCAACTCGTGTGGAacttgatttcatttttggagaaatggACACTGATAGTAAGTTTG
i caeSp111.Scaffold409  I 31 C 0
s caePb3.Scfld02_0       3044975 190 +  4147112 aaacaagaaaatagttgtaaataataaa----acatttcagaactCTCGGAGACATTCGACCTTCTCGACGTCGACAAAGACGGTCGTCTTTCACGTAATGAGATCGCAGCTCTTCTTAGAACCATCAATGTTGAGCCAACTCGCGTTGAGCTTGACTTCATCTTCGGGGAAATGGATACAGACAGTGAGTTAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   177255 175 +   591668 ---agggaaaatgtttt----------------tgtttcagaGCTTTCCGAGACATTCGACCTTTTGGATGTCGACAAAGATGGACGGCTTTCGCGCAACGAAATTGCTGCTCTTCTTAGAACTATTAATGTTGAACCAACGCGTGTGGAGcttgattttatttttggagAAATGGATACTGACAGTGAgtttg
i caeJap4.Scaffold17934 C 0 I 207

a score=-33732.000000
s ce10.chrX              4788959  74 + 17718866 -------------------------------------------------------AAATTCTTGTTT----ATTTGTTTCATACA-----------------------------AAAC--------------AAATTTGAACAA---AAATTGACAAGTT-------TGTCTGTTTGTCT-----GTTTGT
s cb4.chrX              10122623  50 + 21540570 -----------------------------------------------------------------------AGTGGGGTAGCA-------------------------------------------------GAAAACACACAA---AAGCAGATAGGCA-------------TCTCTCT-----ACCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1689510  92 -  4500979 --------------------------------------------------CC----TGTTTTCACTTTCACAGTGATGTCACACCCCAACA-----------------------AATT--------------GAAGAGACGGGG---GAGTCGACCAGCGCCGAGGGTGGTTTTCACTCT-----ACCTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     23748  98 -   201088 -------------------------------------AAACTTCATTCAACccgaaaactttcg-------aaacaTATTGAA---------tcattcttc-------------aaat--------------gaaaGTTAGTGG------CGGGTCGGCA-------TTCCTATCTCTCTGTCTCTTCATC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3045165 180 +  4147112 CAATACGAACACTGAAATCTAGGGACAGTGGAAGTCTAAAATTCATTTATCC--AAAGTTTTCATGCTCTCAAGAGCATCAAACCctgaaactcacttttccatttgcaataaaaaataaaaaacaatttccgaaAGTTAGTCGACCAACCATTTCGACC----ACTCTcctatctctct-----tttctc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   177430 207 +   591668 I

a score=109313.000000
s ce10.chrX              4789033 261 + 17718866 TTCT--CTG----TGTCTCCGTGCA--GGTGTTTACTGCTGAAGT---------------------------------------------------------------------------GTGTAATCCATC---------------ACAGATAC---C-ATCGGTGTG---------------------------------------------------------------------------------GGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGA-TTTTTTGTTGGTTTTT-----TGTGCGC-------------CCTCACATCA-TATTGGTCACTGAA-CTTCTACATCT-TAGGTAATGGTCCGGAACAATT----GACCAAACATTGGTT--------------ATTTTCTCTGAATTTTGTTGT---T
s cb4.chrX              10122673 264 + 21540570 TGCTGCCTGCTGACTCATTCTT-----------TTCCGCTGGAAA---------------------------------------------------------------------------ATGTAGGCAAAC---------------ACAATCAA---CACTTCTCATG---------------------------------------------------------------------------------GGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGcttgattcttttttcttgtttt-----------ctattCAA------ACCCACATCATTTTTGGTCGCTGAACCCGCTG---CTAGAGGTAATGGGCCGTACAAATT----GACCAAACATTAGca--------------attttctttgatttctgtTGTTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1689602 270 -  4500979 TCCG--CGGCTGA--CATTTTTACA--------ATCTATCGGAGT---------------------------------------------------------------------------GTGTATACAAAC---------------ACAACCAA---C-CGACATGTG---------------------------------------------------------------------------------GGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGcttgacttttttgttttttttt-----tcttcattgttcAC---ATTACCCACATCATTTTTGGTCGTTGAA-CTGCTAGATCCAGAGGTAATGGGCCGTATGAAAT----GACCAAGAATTGGca--------------attttctctgatttttgttgt---g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     23846 250 -   201088 GACC--CCG----CACCTGCCT------------CCCGTCAAGTA---------------------------------------------------------------------------GTGTAGACAAACA--------------ATACATGG---T-GTACATGTG---------------------------------------------------------------------------------GGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGcttgacttttttgtttctctta-----tACATACT------------ACCCACATCATTTTTGGTCCTTGAA-CTGCTC------GAGGTAATGGGCCGTAGAAATT----GACCAAACATTAGca--------------attttctctgatttttgttGT---G
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3045345 260 +  4147112 tgcc--CCGGTGACACTTACCTAT---------CTCTGTCCAATA---------------------------------------------------------------------------GTGTACACAAACG--------------ATAGATAG---T-CTAGCCGTG---------------------------------------------------------------------------------GGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTtgactttttcgttttttaga-----GGTTCACTTTA---------ACCCACATCATTTTTGGTCCTTGAA-CTGCTA------GAGGTAATGGGCCGTGTAAATT----GACCAAACATTGgca--------------attttctttgatttctgttGT---G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   177637 475 +   591668 ttct--ctg----cgtctccctccacagtggcgttctgccaagtgtagttgagacgcagagacgcgagaaacatcttttttcaaaaacgtatcGCGTCCCGAACAAGCCGTGTGACAGACATATAGACAAACAGACTTACAAACCCCACAAACAGACTC-ATACACATACCCACAATTGAATTCCCTCCTCACGCTCTAGTCGCCGGTCTCCTCCCGCTAGTGTACAACACTTTGTCGCCCTGCATTCGTAGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGACTTTTTGCTAAATTTTAATCCAAATAGACCGTACAATAGACGAAACATTCCATTTTGGAGGGCGGTT-TAGCGTAACCCAGAACTAATCAgcccttttggtttttagaGCACA-Attgggaaaaagaaaattttcattttctgtataaattgtttt---t
i caeJap4.Scaffold17934 I 207 I 66

a score=1449.000000
s ce10.chrX              4789294 32 + 17718866 CTGCCAGTCACATAATAGAGTAGAGTGAAGTC
s cb4.chrX              10122937 23 + 21540570 CGG---------GGTGAAAATAGAGTCAAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1689872 20 -  4500979 ttg---------TTGAAGAATAGAGTCCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     24096 21 -   201088 TTGT--------TCATAAAATTGAGTCAA---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3045605 20 +  4147112 TTG---------TCATAAAATAGAGTCAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   178112 66 +   591668 I

a score=12467.000000
s ce10.chrX              4789326 133 + 17718866 GAATGGTT--GTCATAAAA-------------GAAATA--------------TTACATTTCTGA------------------GCAATCTTTGCACAT---TTTAACAAA----------------ATGTGTGGGCAGGGAATCACTTTACGGAAGA-ACATAGAACTCTAAAGTAT------CG------CTTT-------CATTCATCATTTGATTTT
s cb4.chrX              10122960 126 + 21540570 GAGTCG-T--GTCATAAGA-------------AACATT-------TGAGCTATTAAATTTCTTT-----------------TGGGATCTTTGTGCT---------AATA----------------ACGTGTGGGcg----------ctcaaaaaatgacatagaaCAGCAGAGTAT------CG----AATTT--------TGTTCATACTTTGATTTT
i cb4.chrX              C 0 I 105
s caeRem4.Crem_Contig0   1689892 133 -  4500979 ----------GTCATAAGA-------------AACATTGACATGATGAGCTATTAAATTTCTTT---------------CATAGGATCTTTGTCCC---------AAAA----------------ACGTGTGGGCG----------CTCAGGAAAT-ACAAAGAACACTGGAGTAT------CG------TTTACAAGAAGCACTCATACTTTGATATT
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold409     24117 129 -   201088 ----------GTCATAAGT-------------AACATT-------CGAGCTATTACATTTCCAA----------------AAAGGATCTTTGtccc----aagaaaaaa----------------acgtgtGGGCG----------CTAAGTAATG-ACAGAGAACACCATCGTATCGTTTACA------TTTC-------TTCTGATGTTTTGATCTC
i caeSp111.Scaffold409  C 0 I 9
s caePb3.Scfld02_0       3045625 132 +  4147112 ----------GTCGCAAGTCatagaaatgagaaacatT-------C-AGCTATTAAATTTCCAA---------------GAGAGGATCTTCGTCCT--------AAAGA----------------ACGTGTGGGCG----------CTCCGGAAGA-CAAAAGAACACTAGcatat------ca------tatt-------ttttaatattttcatttt
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   178178 175 +   591668 AAACGGTTGGTTTCTGAGC-------------AAAAGC-------GATACTGTTATACTTACTAGTGAAAGCGGTTAAAGTTATGAACGTTGCCCTCTTAtctaaaatattaaatttctCGTTGGAAATGTGAGAA----------GAACAGAGGA-ACAAAGAACTCTAATGTAT------CAGTTTACTTTT-------Tgttcatttcgtgttttt
i caeJap4.Scaffold17934 I 66 C 0

a score=343758.000000
s ce10.chrX              4789459 663 + 17718866  
s cb4.chrX              10123191 623 + 21540570  
i cb4.chrX              I 105 C 0
s caeRem4.Crem_Contig0   1690049 603 -  4500979  
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold409     24255 610 -   201088  
i caeSp111.Scaffold409  I 9 C 0
s caePb3.Scfld02_0       3045767 595 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   178353 597 +   591668  
i caeJap4.Scaffold17934 C 0 I 68

a score=-17772.000000
s ce10.chrX              4790122  52 + 17718866 AAATT----TACCTGAG-AAT---ACACCTA-----AATT---------AATATGA---------------ATCGCATTT--------------------------ACACCCCCA
s cb4.chrX              10123814  95 + 21540570 A-ATTGCTGATTGTGAA-taatcgaaatttaaaaaatgta---------gaaaaaaagcATGTTA------CTctccttt---ctttttccttttttttcttcttctctatttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690652 101 -  4500979 ----TGCAATCTCCTAA-AATCCGAAATGtagaaataatt---------aaaaacatatatttgaaaacacttctttttttaactatTCGCCAAATCTgctatttcataatttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     24865  79 -   201088 ATGTTGtatttccggaa-aaa---aaatgtagaaatAATT----GTCTGAAAGTGAAACGT----------AGTCCTTat----tacttttca--------------ttttttgg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3046362  92 +  4147112 ATATTGTCCttactgaacaaa---aaatgtagtaataatttgtcttcttcaaaaaaaactt----------ctttcctAT---ATACTCGCCAAAATCG-------Tctatttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   178950  68 +   591668 I

a score=54432.000000
s ce10.chrX              4790174 122 + 17718866 --CTTC--T----ATTTCATCTGTCCTGTCGTGTTTAAGCTCACCACCCCGTGTTG---------TTCATTCC------TTTCCA--------GAATC---------TTCTT-------TTTTTTAATGTACCACTTTTACCACTGAATAAACTAGTCGCACTTTCAAC
s cb4.chrX              10123909 139 + 21540570 --tttt--tgtctATTC------TCCTGTCgtgtttaagctcatttt-ccGTGTTG-----TTAATTCATTCCCCCTGTCTTCCG---CCTACActtc---------ttcat--acttcttcttcttctttcctttcttctCGCTGAATAAAATAGTAGcactttgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690753 121 -  4500979 --tttc--t-tctgtcCTGTCTATCCTGTCGTGTTTAAGCTCATTTT-CCGTGTTG-----TTACTTCATTCC------TTTCCG---CCCCCAC----------------------------tcgtctcttcttctctattGCTGAATAAACTAGTAgcactttcaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     24944 135 -   201088 --tttc--t-----tccTGTCTATCCTGTCGTGTTTAAGCTCATTTTCCCGTGTTG-----TTACTTCATTCC------TTTCTTCCGCCCACTacac---------ttctc-----tctctctcttttctttcctacTATCGCTGAATAAACTAGTAGcactttcaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3046454 139 +  4147112 --tttcctt-----ttctgtCTATCCTGTCGTGTTAAAGCTCACCTTCCCGTGTTG-----TTActtcattcc------tttctc---cccacgcctt---------ttctccaccacttctctcttctcttttcttctattgCTGAATAAACTAGTAgtactttcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   179018 138 +   591668 CTTTTA--T-----TGCTGTCCTTTCTGTCGTGTCCGAGCTCATTCTCCCGTGTTGTTACTTTACTTCATTCC------TCTTCG---CTCACGCCGCACTgattaatttttggtttttttttctttctctcttcttctcctttt---------------actttcatc
i caeJap4.Scaffold17934 I 68 I 97

a score=-3935.000000
s ce10.chrX              4790296 11 + 17718866 ---------ACTATACAAAG--
s cb4.chrX              10124048 22 + 21540570 aagtttgtcaaTTCccaacaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690874 13 -  4500979 ---------agtttccgaAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     25079 11 -   201088 ---------agttttgaaag--
i caeSp111.Scaffold409  C 0 I 10
s caePb3.Scfld02_0       3046593  2 +  4147112 ---------ag-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179156 97 +   591668 I

a score=-2737.000000
s ce10.chrX              4790307 15 + 17718866 -TTTCACATGCTTCAT---
s cb4.chrX              10124070 14 + 21540570 -----acaccacccacact
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690887 13 -  4500979 -TTTcacaccaccc-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3046595  7 +  4147112 tttcaac------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179156 97 +   591668 I
e caeSp111.Scaffold409     25090 10 -   201088 I

a score=5815.000000
s ce10.chrX              4790322 41 + 17718866 CCACCCTCGCCC---AACAACAACAACAACAAAATGCCCA-----------------CCCA
s cb4.chrX              10124084 61 + 21540570 ccaccctcaccaacagacaacaacaacaacaataaaaGCACCACTACTCAAAAATACCCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690900 36 -  4500979 -------------------acaataacaacaacacacaaacaagtaaccaa------ccaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     25100 40 -   201088 CCACCCTcaacc-------acaacaacaacaagacACAAA--------------TACCCGA
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3046602 38 +  4147112 -caACC-CActc-------acaacaacaacaacacacaaA--------------TACCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179156 97 +   591668 I

a score=134464.000000
s ce10.chrX              4790363 340 + 17718866 AAGCATCAGCTGGAT------------GACCACGTTTTCACTCAAAGCCCA--CCCTCCTTCACTATTTTTTTTTCCAATT-------TTCCACATCCGTCTTTGTTATATTTTTCTGTCGAAAGAAGCAAAAAAAGTAGGATGGAAAAAAATAGATAGGAAGACGGC-----------GGCGGGAAGTTTCAAACACCATC--------GAGATATTATTCATGAAGTGAAGTGCTCTTGGCA-CGGATACGGTGG----TACAAACTT--------T-------AT------------------------GGAAACTTC---AAATCCCTTGAGCCAAATCCATCAAATTTGCAGAGGTG-ATATTCAGAAG-----GAAAAAAGAAACCAAATCCGACATTTGGGAATAA--AGATACACTTC-AAGGTGTGT---
s cb4.chrX              10124145 338 + 21540570 AAGCATCAGCTGGGTGACCACTACGACGACCACGTTTTT--------------TATTCCAATGCTCCTCTTGTTGCCAAAAAGGTTTTTCTCACATCCGTCTTTGTGATATTTT--TGTCGGGAACCG---------------ACGAAAAAATAGATAGGAAGACGATTGGCTGAGGCcg--gaaaagtttcaaacacCACC-------AGAAATATTATTCATGAAGTGAAGTGCTCT----A-CGGATACGGTGG---GGGCAAGTTT--------TCGCA---AC-----------------TTTTTCCG-------C---AAATCCCATGGGTGAGATCCATCAAAATCTTGGAGGTG-ATACTGAGAAACAGtggaggaaaaaatgaaacattgaCTTTTGGGAAT--------ACGTTTCAAAGGTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1690936 351 -  4500979 AAGCATCAGCTGGGT------------GACCACGTTTTTACTCAAAGCA----CACTCCTTcactacttttttttccaattccatGCCTCCCACATCCGTCtttgttatatttt--tgtcGGAAAcggcaaga----------aaaaaaacatagataGGAAGATGAG-----------G--GGGAAGTTTCAAACACCATC--------GCGATATTATTCATGAAGTGAAGTGCTCTTGGCA-CGGATACGGTGG--CTCTCATACTTCTTGAAACTCACA---AC----------------GTTTTTCTGGCAAGCTC---AATTCTCATGGGTCTTATCCATCAAAATCTCAGAggtgaattttgagaaa-----aaaaagaaaatgaaactttgcCTTTTGGGAATCT--GCACACATTTC-AAGGTG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     25140 363 -   201088 AAGCATCAGCTGAGT------------GACCACGTTTTCACTCAAAGCACAAGCTCTCTCCTAC-TTTTTTCCAACCAATTCCAATTCTCTCACATCCGTCTTTGTTATATTTT--TGTCGGAAACggcgaga------------aaaaaaatagataggAAGATGAG---------------GGAAGTTTCAAACACCATC--------GAGATATTATTCATGAAGTGAAGTGCTCTTGGCA-CGGATACGGTGGcacacgcaaacac--------tcacacacacttcttgaaacacacaaaacaTCTTGGCAACTTC--GAATCCCCCAGAGTCTAATCCATCAAAATCTCAGAGGTg-atat--aaaga-----aaaaaaaagatgaaacaTAGACTTTTGGGAATATACACACACATTTC-AAGGTG------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3046640 328 +  4147112 AAGCACCAGCTGGGT------------GACCACGTTTTCACTCAGA-------CACTcgactactttttttttggtcaattcCAATCCTCTCACATCCGTCTTTGTTATATTTT--TGTCGGAAACggccag-------------aaaaaaatagata-------------------------ggAAGTTTCAAACACCATC--------GCGATATTATTCATGAAGTGAAGTGCTCTTGGCA-CGGATACGGTGGCACACGCAAACTC--------TCACAAACAC-----------------ACTTCTCGGCTACTTT---AACTCCCAAGAGTCTAATCCATCAAAATCTCAGAGGtg-atattcaaaga-----aaaaagaagatgaaacatTGACTTTTGGGAATAT--ACACACATTTC-AAGGTG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   179253 294 +   591668 aagtatcAGCTG-GT------------GACCGAAATACTATT-----------Tgttcttttctttgttttc-----------------------tctaTCCTTCTCGTATATT--CTTCATGTATATCTAAA----------ATTAAAAGGGGGCTAGCGCAGCGGC-----------------AAGTTTCAAACATCATCTATTTATGTAGATATTCTTCATGAATTG----------GGCAGCAAGTACGGTGA---------CTTG--------GCACA---AC-------------------TTTTAGTTTAGTTTTCAGAGTCTCTTGAGACCAATCAGTCAAAATGTGTGAGGTG-ATATTCAGAGA----------TGAGATGAATAAT---CTTCTGGGAATAT--GTATACATTTA-AAGGTG---CGT
i caeJap4.Scaffold17934 I 97 I 2044

a score=9934.000000
s ce10.chrX              4790703 53 + 17718866 TGCTCGTTTG---------TCATATTATATGCTCCTGCAACTGCTATCAAAGTTT--GGAAAAA
s cb4.chrX              10124483 50 + 21540570 --------TGTTGTATAAATCACACTA------CTTGCAGCAGATACcaaagttttctggaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1691287 39 -  4500979 --------TG---------TCACATTA------CATGTGGCAGCTCTCGAAACTT--AAGAAAA
i caeRem4.Crem_Contig0  C 0 I 617
s caeSp111.Scaffold409     25503 36 -   201088 --------TG---------TCACACAA------CATGTAGCGGCAATCAGagtc-----gaaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3046968 48 +  4147112 TGCTCGTATG---------TCACACTA------CATGTGGCAGctatcaaagttt-caaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179547 2044 +   591668 I

a score=-515.000000
s ce10.chrX              4790756 10 + 17718866 AAGAAGGAAA-------
s cb4.chrX              10124533 10 + 21540570 aagaagaaaa-------
i cb4.chrX              C 0 I 1337
s caeSp111.Scaffold409     25539 13 -   201088 ---aagtgagattgAA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3047016 14 +  4147112 ---aagaaagattacAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e caeRem4.Crem_Contig0   1691326 617 -  4500979 I

a score=4425.000000
s ce10.chrX              4790766 50 + 17718866 ATGCCTTTCGGGAATACAA-----------GCTTGTTTACTGTTGATGCAGAGAAAGTACA
s caeSp111.Scaffold409     25552 46 -   201088 ----CTCTTGGGAATAGAA---------CTTTTTGTTTACTGTAGGAAGGA--AAAGGGCA
i caeSp111.Scaffold409  C 0 I 901
s caePb3.Scfld02_0       3047030 61 +  4147112 AATCCTCTCGGGAATCGAAAGAAACGTTCTTTTTgtttactgtagaaaaaacgAAAGGGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e cb4.chrX              10124543 1337 + 21540570 I
e caeRem4.Crem_Contig0   1691326 617 -  4500979 I

a score=225.000000
s ce10.chrX              4790816 11 + 17718866 ATAAAAGTGTA
s caePb3.Scfld02_0       3047091 11 +  4147112 AGATGGATGTA
i caePb3.Scfld02_0      C 0 I 1121
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e cb4.chrX              10124543 1337 + 21540570 I
e caeSp111.Scaffold409     25598 901 -   201088 I
e caeRem4.Crem_Contig0   1691326 617 -  4500979 I

a score=0.000000
s ce10.chrX              4790827 2177 + 17718866  
e caePb3.Scfld02_0       3047102 1121 +  4147112 I
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e cb4.chrX              10124543 1337 + 21540570 I
e caeSp111.Scaffold409     25598  901 -   201088 I
e caeRem4.Crem_Contig0   1691326  617 -  4500979 I

a score=271.000000
s ce10.chrX              4793004 12 + 17718866 CCTGAAACATGT
s caeRem4.Crem_Contig0   1691943 11 -  4500979 CCTTAAACATA-
i caeRem4.Crem_Contig0  I 617 C 0
e caePb3.Scfld02_0       3047102 1121 +  4147112 I
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e cb4.chrX              10124543 1337 + 21540570 I
e caeSp111.Scaffold409     25598 901 -   201088 I

a score=368.000000
s ce10.chrX              4793016 55 + 17718866 TTGTTGCAAAGATCAT----TTAACTCTTCCACAA---------ACTTCGTTTTC----AATGCTCGTACCA
s caeRem4.Crem_Contig0   1691954 54 -  4500979 ------CAAAGATCAC----TCCACTTATACATGaatttccagaactttctgttt------tatt--GACCA
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3048223 66 +  4147112 TTCTCACATAAATCACATTTTACACTCTTCCCAAA----CAAGGACTTTCTCCTTTCTCCATATT--TACCA
i caePb3.Scfld02_0      I 1121 C 0
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e cb4.chrX              10124543 1337 + 21540570 I
e caeSp111.Scaffold409     25598 901 -   201088 I

a score=-1881.000000
s ce10.chrX              4793071 5 + 17718866 --ACA--AC
s cb4.chrX              10125880 5 + 21540570 ACACA----
i cb4.chrX              I 1337 C 0
s caeRem4.Crem_Contig0   1692017 5 -  4500979 GCTCA----
i caeRem4.Crem_Contig0  I 9 C 0
s caePb3.Scfld02_0       3048289 5 +  4147112 --ACAAT--
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17934   179547 2044 +   591668 I
e caeSp111.Scaffold409     25598 901 -   201088 I

a score=7027.000000
s ce10.chrX              4793076 54 + 17718866 TAGTAAACTTGATAGTA-GACAGT-TGAGAGCTTTTTTC--------ACTCTCTGTATCAC------CTC
s cb4.chrX              10125885 66 + 21540570 TAGTACACCTGATTAAGTGATCGG-TGAG---CTCTCTCTTATTGatgctctttctctcttctcccaaAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1692022 43 -  4500979 TAGTACACCTGATTATA-GATTGT-CAAA---CTTTCTA--------ACTCTT--------------ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     26499 44 -   201088 TAGTACACCTGATTACA-GGTCGTCCGAG---CTCTCTT--------ACTCTT--------------TAT
i caeSp111.Scaffold409  I 901 C 0
s caePb3.Scfld02_0       3048303 41 +  4147112 TAGTACACCTGATTACA-GATCGT-CGAG-----CTCTT--------ACTCTC--------------CGT
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17934   179547 2044 +   591668 I

a score=140237.000000
s ce10.chrX              4793130 456 + 17718866  
s cb4.chrX              10125951 453 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1692065 488 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     26543 460 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3048344 481 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   181591 395 +   591668  
i caeJap4.Scaffold17934 I 2044 C 0

a score=-17164.000000
s ce10.chrX              4793586 102 + 17718866 GGACTTTTTAAAA--GA-AAATATCCGTTCATGAAGCGCAACACCAgatggctttactttaagccatataagatctggggactgtggaggaagctggacttgaac
s cb4.chrX              10126404  33 + 21540570 --AAATCTTCAAA--CATAATTGTCTT------------AATactcaat--------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1692553  30 -  4500979 --ATATCTCTATA--GA-ATTTCCCTG------------AATGCgag----------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     27003  14 -   201088 ---------------GA-AACTATCAG------------CAC---------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   181986  28 +   591668 Ggctatttcaaaaataa-aaataaata------------aa----------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3048825   0 +  4147112 C

a score=136790.000000
s ce10.chrX              4793688 244 + 17718866 ttttgacttgctagcaaccaccactaccacctgagctatTCCAGATCATACCCAAAACTCTTTTTTTTTCAGTTCAACAGTGTCATCAAAGAGAACTACTGCTACCTGCCACGAGTTGCATACCTTGTCAAAATCTACTCGGTGAACGGAGAAATTATGATCGCGAACATGAAGTCCGGAGATATCAACGGAAGCACACAGGTGCGCAGTTTCAATCACTCATATGTTAGT----TCCG-GCTTAGAGT
s cb4.chrX              10126437 186 + 21540570 ------------------------------------------------------------tttaattttcagtttaacaATGTTATCAAAACCAACTACTGCTTTTTGCCTCGTGTTGCGTACCTCGTCAAAATCTTCTCAGAAAATGGTCTAATCATGATTGCCAATATGAAATCCGGAGATCTGAACGGATGCACACAGGTGCGCAGTTTCAATCACTCCTATGTTAGT---GCCCTTTGTTACGGT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1692583 183 -  4500979 --------------------------------------------------------------tatttttcagttcaacaaTGTCATCAAAACCAACTACTGCTACTTGCCCCGTGTTGCATATCTTGTCAAAATCTTCTCAGAAAACGGACGAATCATGATCGCCAATATGAAGTCGGGAGATATCAACGGATGCACACAGGTGCGCAGTTTCAACCATCCATATGTTAGT----TCCTGGTTTACAGT
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold409     27017 199 -   201088 TTTTGATT-------------------------ATTCAATCC----------CAAA----------TTCCAGTTCAACAACGtcataaaatcaaattattgCTTCTTGCCGCGCGTTGCATATCTCGTCAAAATATTCTCGGAGAACGGTCAAATCATGATTGCCAACATGAAATCCGGAGACATCAAAGGATGCACACAGGTGCGCAGTTTCAACCATCCATATGTTAGT----TCCT-GGTTACAGT
i caeSp111.Scaffold409  C 0 I 8
s caePb3.Scfld02_0       3048825 212 +  4147112 -TTTTGTT-------------------------AACCAATTCAGTTta----caaaa--tttaattttacaGTTCAACAATGTCATCAAAACCAACTACTGTTTCCTGCCACGTGTTGCTTATCTTGTGAAGATCTTCTCCGAAAACGGACAAATCATGATTTCCAACATGAAATCCGGAGATATCAACGGATGCACACAGGTGCGCAGTTTCAACCATTCATATGTTAGT----TCCT-GGTTACAGT
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   182014 176 +   591668 --------------------------------------------------------------tgtttttcagtTCAACATGGTCATCAAAAGAAATTATTGCTTTTTGCCGCGGGTTGCGTATCTCGTCAAAATATATTCGGAAAATGATCAAATTATGATTACACATCTGAAATCCGGAGATTCACATGGAAGCACACAGGTGCGCAATTTCAAGGAATTCTATGTTAGTATTGTCT-----------
i caeJap4.Scaffold17934 C 0 C 0

a score=-2784.000000
s ce10.chrX              4793932 20 + 17718866 GCAGGGGAAACCCAAAACCC
s cb4.chrX              10126624 20 + 21540570 TTCCGAATTCTCCTAAAAAG
i cb4.chrX              I 1 I 8
s caeSp111.Scaffold409     27224 20 -   201088 ATGtgagaatttcgaagaag
i caeSp111.Scaffold409  I 8 C 0
s caePb3.Scfld02_0       3049045 20 +  4147112 TTGTGGAAATTTCGGAGAAA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   182190  5 +   591668 --------AACCC-------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1692766 26 -  4500979 I

a score=303769.000000
s ce10.chrX              4793952 861 + 17718866  
s cb4.chrX              10126652 799 + 21540570  
i cb4.chrX              I 8 I 22
s caeRem4.Crem_Contig0   1692792 859 -  4500979  
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold409     27244 813 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3049065 807 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   182195 853 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=91.000000
s ce10.chrX              4794813 1 + 17718866 T
s caeJap4.Scaffold17934   183048 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049872 0 +  4147112 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28057 0 -   201088 C
e caeRem4.Crem_Contig0   1693651 0 -  4500979 C

a score=0.000000
s ce10.chrX              4794814 4 + 17718866 TATT
e caePb3.Scfld02_0       3049872 0 +  4147112 C
e caeJap4.Scaffold17934   183049 0 +   591668 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28057 0 -   201088 C
e caeRem4.Crem_Contig0   1693651 0 -  4500979 C

a score=-5862.000000
s ce10.chrX              4794818 110 + 17718866 TTGAACCGATGTGTTTTATTATTAAGTGATTGGTCAAGAAAGAAGTTTCAATAGCTCCCCCTATTTTCGAGACAAACAAAATTCACCTAACTCATTTCATGAGGGTGGAC
s caeSp111.Scaffold409     28057  12 -   201088 --------------------------------------------------------------------------------------------------AGAAGagtgaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3049872  12 +  4147112 --------------------------------------------------------------------------------------------------ACTGGACTAgca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   183049   0 +   591668 C
e cb4.chrX              10127451  22 + 21540570 I
e caeRem4.Crem_Contig0   1693651   0 -  4500979 C

a score=-4129.000000
s ce10.chrX              4794928 50 + 17718866 AAATTTTTGTCCGACCATGTAGTAAAACCGCTCTAGGTTACGGTACTCCT
s caeSp111.Scaffold409     28069  1 -   201088 a-------------------------------------------------
i caeSp111.Scaffold409  C 0 I 6
s caeJap4.Scaffold17934   183049 16 +   591668 ---GAACTTTTGGACCttg-------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049884  0 +  4147112 C
e cb4.chrX              10127451 22 + 21540570 I
e caeRem4.Crem_Contig0   1693651  0 -  4500979 C

a score=0.000000
s ce10.chrX              4794978 17 + 17718866 ACCACATCTGTAACTAT
e caePb3.Scfld02_0       3049884  0 +  4147112 C
e caeJap4.Scaffold17934   183065  0 +   591668 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28070  6 -   201088 I
e caeRem4.Crem_Contig0   1693651  0 -  4500979 C

a score=-31.000000
s ce10.chrX              4794995 3 + 17718866 CAA
s caeSp111.Scaffold409     28076 3 -   201088 taa
i caeSp111.Scaffold409  I 6 C 0
s caeJap4.Scaffold17934   183065 1 +   591668 --g
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049884 0 +  4147112 C
e cb4.chrX              10127451 22 + 21540570 I
e caeRem4.Crem_Contig0   1693651 0 -  4500979 C

a score=546.000000
s ce10.chrX              4794998 1 + 17718866 A
s caeRem4.Crem_Contig0   1693651 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     28079 1 -   201088 a
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   183066 1 +   591668 a
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049884 0 +  4147112 C
e cb4.chrX              10127451 22 + 21540570 I

a score=-191.000000
s ce10.chrX              4794999 9 + 17718866 ATCTGTAAA
s caeRem4.Crem_Contig0   1693652 5 -  4500979 GTCTG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   183067 9 +   591668 atttttaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049884 0 +  4147112 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28080 0 -   201088 C

a score=-1490.000000
s ce10.chrX              4795008 40 + 17718866 AATACATTGAAAAACCACGAATGGTGTCGGCTGCGCATTT
s caeRem4.Crem_Contig0   1693657 17 -  4500979 -ATGCCTCGAGAGACCAC----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3049884 23 +  4147112 --------gaaaaacaatcaag---------ttcgtattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   183076  0 +   591668 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28080  0 -   201088 C

a score=-1459.000000
s ce10.chrX              4795048 64 + 17718866 ACCAAAAGGAACGCGACGTTTTAGTTGCTTCATAAATTGAAGACCAGGATCTACGGAATATAAC
s caeRem4.Crem_Contig0   1693674 16 -  4500979 -------------------TTCAGct-----------tgaaa------------------tcat
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3049907  0 +  4147112 C
e caeJap4.Scaffold17934   183076  0 +   591668 C
e cb4.chrX              10127451 22 + 21540570 I
e caeSp111.Scaffold409     28080  0 -   201088 C

a score=-2333.000000
s ce10.chrX              4795112 19 + 17718866 CTTAAATGTATGAATCTCG
s cb4.chrX              10127473  6 + 21540570 -----ATATAA--------
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   1693690 11 -  4500979 ttttcacatat--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   183076  6 +   591668 cttaaa-------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049907  0 +  4147112 C
e caeSp111.Scaffold409     28080  0 -   201088 C

a score=-5476.000000
s ce10.chrX              4795131 39 + 17718866 ----TAAAACTTCCTTGTTTCCCTAACGCTGAATAATTTAAAA
s cb4.chrX              10127479  9 + 21540570 ----TCCAGTTTC------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1693701  9 -  4500979 ----tgaattttt------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     28080  9 -   201088 ----tAAAGgtta------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   183082 11 +   591668 aaaattaaatt--------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3049907  0 +  4147112 C

a score=460310.000000
s ce10.chrX              4795170  942 + 17718866  
s cb4.chrX              10127488  990 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1693710  922 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     28089  904 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3049907  945 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   183093 1109 +   591668  
i caeJap4.Scaffold17934 C 0 I 176

a score=-3873.000000
s ce10.chrX              4796112 96 + 17718866 AAACGAATTCAATGCGACTAAAAACGAAATATAATAAATAAATCATAAATCACG--------ATGCAGTAAAGAAGATAATATCAACATCATATCAGCAATGAA
s cb4.chrX              10128478 70 + 21540570 AAAAGCATCAGG--AGGCTAGA----AAATATG------------TAGAtcacggaaaaaaaattgattcag----------------tTACAACAGCATTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1694632 63 -  4500979 TA------CAGG--CGGCTAG-----ATATATG------------TAGATCACG--------ATTGATTAAGAAAA--------CATATTGTTACAGCATCGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     28993 59 -   201088 -aagaatttcga--tGACTAA-----ACAAATG-----------------------------ATCGATCAAATTAA--------AACATCATAACATCACTGCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3050852 56 +  4147112 gaaaaagtttgaagcgACT-----------ATA-----------------------------ATATGTTAGATTAA--------AACATCATAACAGCATTGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   184202 176 +   591668 I

a score=133228.000000
s ce10.chrX              4796208 414 + 17718866  
s cb4.chrX              10128548 380 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1694695 389 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     29052 387 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3050908 418 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   184378 376 +   591668  
i caeJap4.Scaffold17934 I 176 C 0

a score=-21110.000000
s ce10.chrX              4796622 111 + 17718866 CTTTTGCATGGGGTGTTCGCTAAAACTCAA-----GTACTAAAGTATAGTTGAAATTGCAAGATTTCTGCCATGCATGCAATTATCAAATAATAAAGCAAAATACCCAAAATAACT
s cb4.chrX              10128928  34 + 21540570 -----------------------TGTTCAT-----TTAATGAagttttttcggtttt------------------------------------------------------gaGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1695084  33 -  4500979 -----------------------tattcagaATGAGTAGTGATACTTAGTC------------------------------------------------------------AAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     29439  19 -   201088 ---------------------------CAT-----ATAATGGGAATCCCCT-----------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   184754  29 +   591668 ---------------tttttgtttgaactt-----ttaaaaatgattat-------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3051326   0 +  4147112 C

a score=131130.000000
s ce10.chrX              4796733 142 + 17718866 CACAAATGATGGTGCAACCTCGGAGTGTAACTACTAGCTGCTGACGGCGGCGGCATTTTTGGAGGAGATGGTGGATAAAACTGCGGTGGATCAGGCTTATAGTCC------GTGGCAGTGGTAGTTGTAGTGTGAGATGAAGCACCTG
s cb4.chrX              10128962 148 + 21540570 TACAAATGATGATGTAATCTTGGGGTGTAACCGCTGGCTGCTGATGGTGGTGGCATTTTTGGTGGGGATGGTGGATAGAATTGAGGTGGTTCTGGTTTGTATTCTCCGTTTGTTGTTGTCGTAGTAGTGGTATGAGATGCGGCACCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1695117 148 -  4500979 GACAAATGGTGGTGCAATCTTGGAGTGTAACTGCTTGCAGCCGATGGTGGTGGCATTTTTGGTGGGGATGGTGGGTAGAACTGAGGTGGTTCTGGTTTGTAGTCAGATGCGGTTGTAGTAGTTGTAGTGATGTGAGAGGTAGCACCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     29458 145 -   201088 TACAAATGATGATGTAATCTTGGCGTATAGCTGCTGGCTGCCGATGGTGGAGGCATTTTTGGAGGGGATGGTGGATAGAACTGAGGAGGCTCTGGTTTGTAGTCA---GCAGTTGCCGTTGTGGTTGTTGTGTGAGAGGTAGCACCTG
i caeSp111.Scaffold409  C 0 I 30
s caePb3.Scfld02_0       3051326 145 +  4147112 taCAAATGATGATGCAATCTTGGGGTGTAACTGCTTGCTGCAGATGGTGGTGGCATTTTCGGTGGAGATGGTGGGTAGAACTGTGGTGGCTCTGGCTTATAATCT---GCCGATGTCGTAGTTGTAGTGGTATGAGAGGTAGCTCCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   184783 145 +   591668 tACAAGTGATGAAGTTTTCTCGGGGTGTAGCTACTAGCAGCCGACGGTGGTGGCATTTTTGGAGGAGATGGTGGATAGAACTGTGGCGGCTCTGGTTTGTAATCG---GTTGTTGTTGTGGTTGTTGTGATGTGAGATGTTGCACCTG
i caeJap4.Scaffold17934 C 0 C 0

a score=1413.000000
s ce10.chrX              4796875 3 + 17718866 AAA
s cb4.chrX              10129110 3 + 21540570 GAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1695265 3 -  4500979 GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3051471 3 +  4147112 AAA
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17934   184928 3 +   591668 TAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     29603 30 -   201088 I

a score=273.000000
s ce10.chrX              4796878 1 + 17718866 T
s cb4.chrX              10129113 1 + 21540570 T
i cb4.chrX              C 0 I 36
s caeJap4.Scaffold17934   184931 1 +   591668 T
i caeJap4.Scaffold17934 C 0 I 43
e caePb3.Scfld02_0       3051474 38 +  4147112 I
e caeSp111.Scaffold409     29603 30 -   201088 I
e caeRem4.Crem_Contig0   1695268 0 -  4500979 C

a score=487.000000
s ce10.chrX              4796879 33 + 17718866 GTTAAAAAATTACA-----GTATAAAGTTAAGTTACGG
s caeRem4.Crem_Contig0   1695268 36 -  4500979 --TAAGAAATCATGTTTATATATAAACCAGAATAATGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3051474 38 +  4147112 I
e caeJap4.Scaffold17934   184932 43 +   591668 I
e cb4.chrX              10129114 36 + 21540570 I
e caeSp111.Scaffold409     29603 30 -   201088 I

a score=0.000000
s ce10.chrX              4796912 775 + 17718866  
e caePb3.Scfld02_0       3051474  38 +  4147112 I
e caeJap4.Scaffold17934   184932  43 +   591668 I
e cb4.chrX              10129114  36 + 21540570 I
e caeSp111.Scaffold409     29603  30 -   201088 I
e caeRem4.Crem_Contig0   1695304   0 -  4500979 C

a score=210.000000
s ce10.chrX              4797687 6 + 17718866 TTATAT
s caeSp111.Scaffold409     29633 6 -   201088 ttttgt
i caeSp111.Scaffold409  I 30 C 0
e caePb3.Scfld02_0       3051474 38 +  4147112 I
e caeJap4.Scaffold17934   184932 43 +   591668 I
e cb4.chrX              10129114 36 + 21540570 I
e caeRem4.Crem_Contig0   1695304 0 -  4500979 C

a score=192.000000
s ce10.chrX              4797693 3 + 17718866 CGA
s caeRem4.Crem_Contig0   1695304 3 -  4500979 CAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     29639 3 -   201088 cAC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3051474 38 +  4147112 I
e caeJap4.Scaffold17934   184932 43 +   591668 I
e cb4.chrX              10129114 36 + 21540570 I

a score=546.000000
s ce10.chrX              4797696 1 + 17718866 A
s caeSp111.Scaffold409     29642 1 -   201088 A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3051512 1 +  4147112 A
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17934   184975 1 +   591668 A
i caeJap4.Scaffold17934 I 43 C 0
e cb4.chrX              10129114 36 + 21540570 I
e caeRem4.Crem_Contig0   1695307 1 -  4500979 I

a score=225403.000000
s ce10.chrX              4797697 600 + 17718866  
s cb4.chrX              10129150 647 + 21540570  
i cb4.chrX              I 36 I 14
s caeRem4.Crem_Contig0   1695308 466 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     29643 434 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3051513 610 +  4147112  
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17934   184976 461 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-17551.000000
s ce10.chrX              4798297 49 + 17718866 TAGACTTTGAG------------------TTAAACTATTTTGATTA---------TTACGTCCATTTTAAATATAG
s cb4.chrX              10129811 74 + 21540570 GTGATTCTAGGCAAACAATTTGGAGggtacaaaatttttctag--gtcaatgGGGTGAAAAGCAATTTAGGTGTAC
i cb4.chrX              I 14 I 16
s caeRem4.Crem_Contig0   1695774 18 -  4500979 -TGACTCCAGG--------------------AAATTTCC-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3052157 64 +  4147112 caaacttcagC------------ATAGCGAAAAAGTATTCTCATTGCCAGACACTTCATGACTATTTTGGGTTTTG
i caePb3.Scfld02_0      I 34 I 22
s caeJap4.Scaffold17934   185437  7 +   591668 --------------------------------------------------------------ttgTTTA-------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     30077  0 -   201088 C

a score=0.000000
s ce10.chrX              4798346 28 + 17718866 CACAGCAGTGACCCAAATTAAAGGTGTC
e caePb3.Scfld02_0       3052221 22 +  4147112 I
e caeJap4.Scaffold17934   185444  0 +   591668 C
e cb4.chrX              10129885 16 + 21540570 I
e caeSp111.Scaffold409     30077  0 -   201088 C
e caeRem4.Crem_Contig0   1695792  0 -  4500979 C

a score=-26496.000000
s ce10.chrX              4798374  80 + 17718866 ACTAAAACTTTT----------AAAAACATTTTATCATGATTTTTGGCTATTT------------------TAGCACCATAGCAATAGTTTTTAATC--------------------------ATTCTTATGTG
s cb4.chrX              10129901 130 + 21540570 attctagattttttaaagttaaaaaaaggTCAAATAATGTCCTGCTTTTATTGACTCTAGCCAATTTTGACTAACATT----CCTAGGTTTTTCATAGCATATATTACTGTACCATTCACccttttcttaattt
i cb4.chrX              I 16 I 6
s caeRem4.Crem_Contig0   1695792  41 -  4500979 ACTATAAATTGT----------AAAAAGATT-------------CCTTTGTTG----------------------------------------------------------------------TTTCGTGAGTT
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3052243  74 +  4147112 -ATCTAAGCCAT----------TAAATGAAC----CATaccatctttttgttt--------------tgagtaaCGAC----AACTGTTCTGTAACCGAA-----------------------TTCCTTC----
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17934   185444  10 +   591668 -------ATTTT----------ATAAT-----------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     30077   0 -   201088 C

a score=233838.000000
s ce10.chrX              4798454 294 + 17718866 AACTTACCGGTTTTAGAAACCCGAAAGCTACCCCAGTGCAACTTGAATCCTTT------CGAATTTGAGCCATTGGGATTTGAGTGCCACCAAAGTGTCAGTGCGTTATGTGAGCTTGTATTCAAAATGCGATTTTCAAAGTGTCCACAAAATTGTCCTGCAATTA--CCCAAGTACATCCACTTGATCATCACTC-AATCTC------------------CCC------TCTAAACCAAACTGT------TC------ATGCATCTGGCCATCTGGATTAGGGTCTCA-----------CGCCGACCAC----------------CC-----------GG-----TTCAAATTAATTTGAGAA--CTGTCGAGAATGTGGGAA
s cb4.chrX              10130037 361 + 21540570 AACTCACCAGTCCTGGAAACTCGAAACGCTCCCCAGTGCAACTTGAAGCCTTT------TGAATTCGATCCGTTCGGATTTGAGTGCCACCACAGGGTCAGCGCGTTGTGTGAGCTCATGTTCaaaatgcgattttcaaagtgtccACAAAATTGTCCTGTAATTA--CCCAAGTACACCCACTTGATCATCATCT-TATCCCCTCCTAGTCTCCTTGTCTTCTC---AATTCCACTCAAACCG---------AAAAAGATGCATTTGCCCATCTGGATTAGTGtctcattttgtttcttttcttatGCCAACCATTCTCACTCTTCTCCTTATGCAGTGGATGGGTTCAGATTAATTTGGGAATTATAACAAGAC--TGGGAA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1695836 307 -  4500979 -ACTTACCAGTTTTCGATACTCTGAATGCGCCCCAGTGCAATTTGAATCCTTT------TGAATTTGAACCATTCTGATTGGAGTGCCACCAAAGTGTTAACGCATTGTGTGAGCTCATGTTCAAAATGCGATTCTCAAAGTGTCCACAGAATTGTCCTGCAATTA--CCCAAGTACA-CCACTTGATCATCATCT-TATCCC------------------TCTC---AATCCAATTCGAACTGG------TCAAAAAGATGCATCTGGCCATCTGGATTAGTGTCTCA-----------TGCTTACCCC----------------Ctctttttg----ggat---ttcaaatTAATTTGAGA---ATATCGAGAC--TGGGAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold409     30077 315 -   201088 AACTAaccagtttttgaaactctaAAAGATCCCCAATGTAATTTGAATCCTTT------CGAATTCGAACTGTTTGGATTTGAGTGCCACCAAAGGGTCAACGCATTGTGTGAGCTTGTGTTCAAAATGCGATTCTCAAAGTGTCCACAGAATTGTCCTGCAATTA--CCCAAGTACA-CCACTTGATCATCATCT-TATCCC------------------ACTC---AATCCAATCCGAACCGG----GGCCAAAAAGATGCATTTGACCATCTGGATTATTGTCTGA-----------TGACAATCCC------------CCCACCCTTTTCG----Gggt---ttcaaattaatttgagAA--TCATCGAGAC--TGGGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3052317 315 +  4147112 AACTCACCTGTTCTCGACACTCTAAATGAGCCCCAATGTAACTTGAATCCTTT------TGAATTCGATCCATTCGGATTCGAGTGCCACCAGAGGGTTAATGCATTGTGTGAGCTCGTGTTCAAAATCTTATTCTCAAAGTGTCCACAGAATTGTCCTGCAATTA--CCCAAGTACA-CCACTTGATCATCATCT-TATCCC------------------ACTC---AATCCGAATTGAACCGGGGGTGGCCAAAAAGATGCATTTGACCATCTGGATTAGTGTCTCA-----------TGCCTACCAC------------CCTCCC----TCT----AGGT---TTCAAATTAATTTGAGAA--CCATCGAGAC--TGGGAA
i caePb3.Scfld02_0      C 0 I 71
s caeJap4.Scaffold17934   185454 326 +   591668 ----TACCAGTTTTGGAGACACGGAAAGATCCCCAGTGCAATTTGAATCCTTTCGCTTCCGGACTAGAGCCATTTGGATTTGAGTGCCACCAAAGGGTCAACGCATTATGTGAGCTCATGTTCAAGATGCGATTCACAAAGTGTCCACAGAATTGTCCTGCAATTAACCCAAAGTACA-CCACTTAATCATCATCTAAATACC------------------ACTCAAAAACCCAAACCCAACTGA------CAAAAAAGATGCATCTGACCATCTGGATTAGTTTCACA-----------TGTCGGTTCA-------TTCATCGTCTTTTTCTCT----AG-----TGTTAATTGATTTGAGAACGTTTTCAAAAC--TAAATC
i caeJap4.Scaffold17934 C 0 C 0

a score=-13574.000000
s ce10.chrX              4798748 45 + 17718866 CGT-----GACATAAATCACGTCAAGACATCATAATTCTATTAA-----CAACAT--------------
s cb4.chrX              10130398 44 + 21540570 CGTAGtaagaaactggaa--------aaatc--aaatctaGTGAT-CATGGACCC--------------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1696143 37 -  4500979 CGT-----GAAACCAGTC--------TACTCAGAAAACCTGAGA-----GAAGTC--------------
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold409     30392 33 -   201088 CGT-----GAAATCAG----------AAACCGGAAACCCCCGGA-------ACAT--------------
i caeSp111.Scaffold409  C 0 I 5
s caeJap4.Scaffold17934   185780 51 +   591668 -----AGAGAAAC-------------AAGCCAGAAGCACTAATACACCTCAATATTGGGCTTTCATTTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3052632 71 +  4147112 I

a score=66.000000
s ce10.chrX              4798793 5 + 17718866 TCTTT
s cb4.chrX              10130448 1 + 21540570 ----T
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold409     30430 5 -   201088 TCGGT
i caeSp111.Scaffold409  I 5 I 18
s caeJap4.Scaffold17934   185831 5 +   591668 TAGTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3052632 71 +  4147112 I
e caeRem4.Crem_Contig0   1696180 37 -  4500979 I

a score=335190.000000
s ce10.chrX              4798798 477 + 17718866  
s cb4.chrX              10130449 458 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1696217 474 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold409     30453 492 -   201088  
i caeSp111.Scaffold409  I 18 C 0
s caePb3.Scfld02_0       3052703 486 +  4147112  
i caePb3.Scfld02_0      I 71 C 0
s caeJap4.Scaffold17934   185836 483 +   591668  
i caeJap4.Scaffold17934 C 0 I 121

a score=-1597.000000
s ce10.chrX              4799275 8 + 17718866 AAACATGT
s cb4.chrX              10130907 5 + 21540570 G---ATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1696691 8 -  4500979 AGACATag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     30945 8 -   201088 AGTTGTgt
i caeSp111.Scaffold409  C 0 I 19
s caePb3.Scfld02_0       3053189 8 +  4147112 aaccaaGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   186319 121 +   591668 I

a score=-6313.000000
s ce10.chrX              4799283 27 + 17718866 ACTAGTAATGCTATCACTGAGAAAAAT----------------
s cb4.chrX              10130912 27 + 21540570 ---AATTGTGTCATCCC--------ATCTTTCCCACAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1696699 21 -  4500979 ---atttgttttgtttc--------ctcTTC------A-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3053197 21 +  4147112 --------TTTTGTCCC--------CCTTCG------AAACAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   186319 121 +   591668 I
e caeSp111.Scaffold409     30953 19 -   201088 I

a score=31199.000000
s ce10.chrX              4799310 65 + 17718866 AATACATATCATAAAAAGTTGATGTCTACT--GGGATAAAG-----------TCTACACTACGTAATGTGTGTACGCT
s cb4.chrX              10130939 74 + 21540570 GCCATATATCATGCAAATTTGGTGTCTTCG-AAAGATGGGGATGCGAGAAA-GCCATACTACATAATGTGTATA--CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1696720 74 -  4500979 GACATATATCATGCAAATTTGGTGTCTACT--GGGATGGGGGGACGGAAGCTACTACACTACATAATGTGTATA--CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     30972 71 -   201088 AACATACATTATGCAAATTTGGTGTCTATT--GGGATAAAG---AAGAAGCTACTACACTACATAATGTGTATA--CT
i caeSp111.Scaffold409  I 19 C 0
s caePb3.Scfld02_0       3053218 69 +  4147112 -----ACATCATGCAAATTTGGTGCCTATTGGGGGATAAAG--AAAGAAGCTACTACACTACATAATGTGTATA--CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   186319 121 +   591668 I

a score=23471.000000
s ce10.chrX              4799375 490 + 17718866  
s cb4.chrX              10131013 310 + 21540570  
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig0   1696794 363 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     31043 290 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3053287 346 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   186440 339 +   591668  
i caeJap4.Scaffold17934 I 121 C 0

a score=-35182.000000
s ce10.chrX              4799865 202 + 17718866 TATGTTGCAACTTGATTTGAACGTTTGTTATAAATTTCTCAAACTTTCAAAACGTTGCCAGAAAC---ATTTTAAAGTTGTTTTCTAATAATTCTCTTTTATTTAGAATATTCTAAGTGTGCTTAGACGACATTTCCACTTACTGTAAGTACAGAAAAATGTTATGTTTTGACCACCTATATTTTTGGTTGTGAACTGGTGACCC
s caeRem4.Crem_Contig0   1697157  43 -  4500979 -------------AAT------------------------------------------------------------------------------------------------------GTACC------------CAAGTTGTTGATGGAAGAG----------------AACCGGAAA-------------------ATGACcc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     31333 128 -   201088 AATGACAC-ATTTAATAATAACAAT--ATAAACATAATCCAAA----GAAAGAATGGTCAAAA--------TGAGAGCTGAT-----ATGATTTT---------------------GGATGCTTGTAT----TTGCGAGTTGTcgaaggaagaggaa-------------aatcaacaa-------------------atgaccc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3053633  67 +  4147112 GGTGATACTATTCAAT------------------------------------------------------------------------------------------------------ATACCTGCAT----TTGCTAGTTGTCcaa-gagaagaaa-------------aaccaacaat------------------atacccc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   186779  54 +   591668 -----------------------------------------------------------AAAAACTTTATTTGAAAGC----------------------------------------GTTCTTGAAA-------ATAGTGATT----GTGGAGAAg-----------------------------------------atgattc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10131323  78 + 21540570 I

a score=202055.000000
s ce10.chrX              4800067 476 + 17718866  
s cb4.chrX              10131401 473 + 21540570  
i cb4.chrX              I 78 I 5
s caeRem4.Crem_Contig0   1697200 461 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold409     31461 441 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3053700 453 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   186833 475 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=981.000000
s ce10.chrX              4800543 7 + 17718866 ACAAAAT
s cb4.chrX              10131879 5 + 21540570 --aaaaa
i cb4.chrX              I 5 I 10
s caeSp111.Scaffold409     31902 7 -   201088 TCAGAGA
i caeSp111.Scaffold409  C 0 I 30
s caePb3.Scfld02_0       3054153 7 +  4147112 TTCAAGA
i caePb3.Scfld02_0      C 0 I 111
s caeJap4.Scaffold17934   187308 7 +   591668 ACAAAGG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1697661 30 -  4500979 I

a score=122.000000
s ce10.chrX              4800550 7 + 17718866 GAAATTA
s cb4.chrX              10131894 7 + 21540570 aagagtt
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   1697691 7 -  4500979 ttgattt
i caeRem4.Crem_Contig0  I 30 C 0
s caePb3.Scfld02_0       3054271 7 +  4147112 tcaagtt
i caePb3.Scfld02_0      I 111 C 0
s caeJap4.Scaffold17934   187315 7 +   591668 ATAATTA
i caeJap4.Scaffold17934 C 0 I 241
e caeSp111.Scaffold409     31909 30 -   201088 I

a score=-103067.000000
s ce10.chrX              4800557 299 + 17718866  
s cb4.chrX              10131901 432 + 21540570  
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   1697698 273 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold409     31939 357 -   201088  
i caeSp111.Scaffold409  I 30 C 0
s caePb3.Scfld02_0       3054278 492 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   187322 241 +   591668 I

a score=-9424.000000
s ce10.chrX              4800856 37 + 17718866 -------------------TCGCTTCAGTTAGTATTGTATATTAC------------AACTTTTTGTT---
s cb4.chrX              10132346 55 + 21540570 tcttttcgaaaa------------caaagaaaacatttGCATTCTGAATTGAGGAAA-ACTGTTTCTT---
i cb4.chrX              I 13 C 0
s caeSp111.Scaffold409     32296 48 -   201088 -------AAAAAGACTATGTTTTTCTCACAAACTTATTTTCTTAT----------------GTTTTCTGGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3054770 39 +  4147112 -------AGAAA---------CCtccaggaaaatttttgaattca----------------attttttttt
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold17934   187322 241 +   591668 I
e caeRem4.Crem_Contig0   1697971 31 -  4500979 I

a score=-17186.000000
s ce10.chrX              4800893  36 + 17718866 -------------AACCATCAGTCTTAGTAAGTTTTAACT-------------------------GCCTGAAAA---------------------------------------------------------
s cb4.chrX              10132401 129 + 21540570 TTCAAGAGACAAAGGCCTTcctttttagaatatttttcctaattttatGCATACAGtagagacgaaaaaaaaaacatctgcgCTTTACAACCCCCGCGAGAAAAAGGACGCACCCAATTTGCACG--AATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698002  38 -  4500979 --------------ACCTTCGGTTT----------------------------------------ACCAATAAACTGTTG------------------------------------GTTTGCTGG--TA-T
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold409     32344  41 -   201088 -------------------------TACTATATTTTCCTG-------------------------AACaatcaatttt--------------------------------------aattattgGACAA--
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3054809  28 +  4147112 I
e caeJap4.Scaffold17934   187322 241 +   591668 I

a score=45703.000000
s ce10.chrX              4800929 236 + 17718866 TCTCAAAAGACCATAC-------CAGTAAATTTCAAAAAATAGCAAAACCAAC-CCACTAGTTGGCAATAAATCATCAAT-AATTGTTCCCTGATAAGAG----TGCTC----AAA------AAAACTTCTAGT----GTGGTGATAACC----AACGGG-AATATT-GCGTCGTTCACACCGCCTCTTGACTAAAAAAAGGCAAAGATAGGAGGAAGACA-------GAGGTTTCAATGA--GGT--TGAAGTGCTGCTCC-AAACTGACGCCGAA-----------GGCC
s cb4.chrX              10132530 253 + 21540570 TTGCAGATAAAT-AGCACTGCGGAAACAGACTAATAAAATATGTGAAATCAAC-CAATTT-TTGGCAATAAATCATCAATAAAATGATCTGTGATAAAAG----CACT-----AAAACGCTGAAAACGAGAGAAAT--AGAGTGATAATC----GGTGGG-AATACTGCCTTCTCTCA--------GTTTACATAATGAGtgagga---agaaaaaaccaA---TGAGAAGGTTTCAATGA--GGTTGTGAAG---TGCTCC-AAACTGACGCCAAAACAGGGTGTGTGGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698040 241 -  4500979 TTGCAGTGAAAC-CAC-------AAATGAATTAATAAAA-ATGCAGAAATAGC-CTACTCGTTGGCAATAAATCATCAAT-AAATGTTCTGTGATaagag----caa------aaaaaacgggaaacgagagaaatagagagtgATAACC----GGCGGGAAACAATACCTTCACTAC--------TTCAACAGGAATAGTgtgta---agaaaaaaagaaaagaagggaggTTTCAATGAAGAGGGGTGAAG---TGCTCC-AAACTGACGCCGAA-----------GGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     32385 225 -   201088 ------TATAGA-CAA-------TCGAAAACT--tataaaacaagaaaccaAC-CCATTA-TTGACTATAAATCATCAAT-AAATGTTCTCTGATAAGAG----cacccttcaaaa------aatagaaggtAA----GGAGTGATAACC----CATGAG-ACAATTCGCGTCGTTCATTAC-CTACTTGACAAAAACGgtgtgag---agaaaaaaggca-------gAGGTTTCAATGA--GGT--TGAAG---TGCTCCAAAACAGACGCCGAA-----------GGCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3054837 243 +  4147112 TCGCACAACACT-TAC-------TTGTAAAATACTATGAAAGAAGAAACCAACATCATTAGTTGCCAATAAATCATCAAT-AAATGTTCTCTGATAAGAGCACTCACCccccaaaaaaactgaagagtaGAAAA----AGAGTGATAACTGGTGGGTGAG-GAATTTCACATCGTTca-----ctttttgacaaaaacgggttgag---aagcaaaaga-a-------gaggTTTCAATGA--GGC--TGAAG---TGCTCC-GAACTGACACCGAA-----------GGCC
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold17934   187322 241 +   591668 I

a score=110824.000000
s ce10.chrX              4801165 134 + 17718866 A----------------------CAAAAACACATCGA----TCATTTGGTGATTGAACAGATGAGCCTTATATGAACCGAGAAGACAG-----CA--------------------------ACCACCCGCCTCGCGCATTCACTA----TTCGGCCATTGAATATTCTACTATTGTGCGGGTCTTCTAAGTCTTT
s cb4.chrX              10132783 182 + 21540570 ACCATTGAAAAGGAGAGAATAACCAAAAACACATCGATCATTCATTTGGTGATTGAACAGATGAGCCTTATATGAACcgggaagaaga-----aagagagaaggaaaagaagaaagaagacaTCACCCGCCTCGCGCATTCTGTATCAATCTC--CATTGAATATTCCACCATTTTGCGGGATCTTT------AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698281 139 -  4500979 A----------------------CAAAAACACATCGA----TCATCTGGTGATTGAACAGATGAGCCTTATATGAACCGAGAAGAAGA-----CACCA-----------------------ACCAGCCGCCTCGCGCATTCTGTATTATTTGG--CATTGAATATTCTACCATTGTGCGGGTCTTCTTAGTGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     32610 132 -   201088 A----------------------CAAAAACACATCGA----TCATTCGGTGATTGAACAGATGAGCCTTATATGAACCGAGAAGACAG-----CA--------------------------ACCACCCGCCTCGCGCATTCTGTA----CTCG--CATTGAATATTCTACCATTGTGCGGGTCTTCTTAATCTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3055080 132 +  4147112 A----------------------CAAAAACACATCGA----TCATCTGGTGATTGAACAGATGAGCCTTATATGAACCGAGAAGACGG-----CA--------------------------ACCATCCGCCTCGCGCATTCTGTA----GTCG--CATTGAATATTCTACCATTATGCGGGTCTTCTAAGTGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   187563 129 +   591668 A----------------------CAAAAACGCATCCA----TCATTTGGTGATTGGGCAGATGAGCCTTATATGATCCGAGAAGACCGACCATCA--------------------------CCCGCCCGCCTCGCGCATTTTGTA----TTCA--TTGTGAATATTC--------TGCGGGTCTTTTTGGTTCTT
i caeJap4.Scaffold17934 I 241 I 482

a score=12087.000000
s ce10.chrX              4801299 21 + 17718866 CGGACCTTTTGATCAGTTTTG
s cb4.chrX              10132965 21 + 21540570 TGAATCATTTGATCATAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698420 21 -  4500979 CGGAccttttgatcaaaattg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     32742 21 -   201088 CGGATCTTTTGATCAGTTTTG
i caeSp111.Scaffold409  C 0 I 169
s caePb3.Scfld02_0       3055212 21 +  4147112 CGGACCTTTTGATCAGTTGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   187692 482 +   591668 I

a score=546.000000
s ce10.chrX              4801320 1 + 17718866 T
s cb4.chrX              10132986 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698441 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3055233 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 170
e caeJap4.Scaffold17934   187692 482 +   591668 I
e caeSp111.Scaffold409     32763 169 -   201088 I

a score=29.000000
s ce10.chrX              4801321 1 + 17718866 A
s cb4.chrX              10132987 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698442 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 131
e caePb3.Scfld02_0       3055234 170 +  4147112 I
e caeJap4.Scaffold17934   187692 482 +   591668 I
e caeSp111.Scaffold409     32763 169 -   201088 I

a score=-8674.000000
s ce10.chrX              4801322 926 + 17718866  
s cb4.chrX              10132988 547 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3055234 170 +  4147112 I
e caeJap4.Scaffold17934   187692 482 +   591668 I
e caeSp111.Scaffold409     32763 169 -   201088 I
e caeRem4.Crem_Contig0   1698443 131 -  4500979 I

a score=-271.000000
s ce10.chrX              4802248 31 + 17718866 ACACTTGGGAACGT----ATGTGGAA-AATTGAAGC
s cb4.chrX              10133535 31 + 21540570 --CCAATTGGAAGAAATCATCGGAAATAATTTA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698574 29 -  4500979 ACACTAGTGAATGA----ATcggaaataattga---
i caeRem4.Crem_Contig0  I 131 C 0
e caePb3.Scfld02_0       3055234 170 +  4147112 I
e caeJap4.Scaffold17934   187692 482 +   591668 I
e caeSp111.Scaffold409     32763 169 -   201088 I

a score=35436.000000
s ce10.chrX              4802279 148 + 17718866 AATTACTGAGATCATAACTCGACAGGTGAC-------------------CACCACAAGCAGGTCATCTGTTAAGACA--GTCTGTCAC------TCATCA--------TCTCTTCCACCCTC-------------------TTTTCTTGCTCCTCCCTACATCTTCGGCACATTAA---CACTC--AATCGTATGCTCATTTTCGAG
s cb4.chrX              10133566 197 + 21540570 AATTTATGGGATCATAATGAGACAGGTGCCTCCTCCTCTTTCTCTCCCACAACGACAGCAGGTCATCTGTTAAGACAGTGTCTGTCATTACATCCTACCACCCTATCCACCTTCCACACCTCATCATCACCACAACCGCCACCATCTTCTCCTCCGCCGCTT------CTCATTAG---CTCTCTTCAtctatctcaat-tttcgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1698603 156 -  4500979 aatttatgaGATCATAATGAGACAGGTGCC-------------------AAACGCAAGCAGGTCATCTGTTGAGATA--GTCAATCATGACATCCAATC----------CCTTCCCCACTGC-TCCTCCCTTCACCGCCCGTTTTCTTTGCTTGC-------------CTCGTTAG---CACCC--AATTGCCCTCACA-TTTCGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     32932 135 -   201088 AATTTATGAGATCATAACCAGACAGGTGAC-------------------TAACGGCAACAGGTCATCTGTTAAGGTA--GTCTGTCATTACAT-TCACCA---------------CAACTgt-------------------tcttccttctcttc-------------tctgaTCGACTCATCC--AATTGCCCTCTCA-TTTCGAG
i caeSp111.Scaffold409  I 169 C 0
s caePb3.Scfld02_0       3055404 133 +  4147112 AATTTATGAGATCATAACGAGACAGGTGAC-------------------TAACGCAAGCAGGTCATCTGTTAAGGTA--GTCTGTCATTACATCTAACCA--------------CCAACtgt-------------------tcttcatcatcttc-------------tccgTTGG---CACCC--AATT-CCTTCTTA-TTTTGAG
i caePb3.Scfld02_0      I 170 C 0
e caeJap4.Scaffold17934   187692 482 +   591668 I

a score=161117.000000
s ce10.chrX              4802427 351 + 17718866 AGTCAATTAATTAGGCCGACTGT----------CGTG-ACA---AATCA---TTC-GAA---TGTTGCGTTTCAAAAGCACATATTTCAACAAAATGGGCT--------------GAAAGAGCCCGGGAGGG-----------------TCTTTCTTGTAACGTGTTTGTGTCGAGTGCATCGCCGGTGATTGATGAGAAAGAACGAC----GAGTCCGTCCC-----AAGAAGCA--GCTCTTCTTCCTCGC-CCATT-GACAGTGTATCATTT-GTGGGGAAGAAGCAAGAAAAGAAAATGA---------------AGCACGTC-TGTGTAAGCCC-TAGTCATATATACCGGTTTGGTGGAGCAG--AGAAGGAGATGAA---------TAGAGTAAGA-----AAAAATTAA--A---ATCAGACTACAAAGGACAGAGATAAAATGCAA
s cb4.chrX              10133763 401 + 21540570 agttcatTAATCA-GACAAATGTTCTTTTCATGTATG-ACACACACCAA---TTCTGAA---TGTTGCGTTTCGAAAGCACATATTTCAACAAAATGAGCTGTTGGGGCTGGGAGGGGAGCTGCCGTTGGTGGTGGGGGTCCCGCTCTTCCTCTCTTGTAACGTGTTTGTGTCGAGTGCATTGCCAGTGATTGATGAGGAAGAACGACCGAGGAGTCCGTCTTCTAAGAAGCAGCTCGCTCCTTTTTCCTCGCTCGATT-GACAGTGTATCATTT-TGGAGGGGAAGAAAACGACAGAGACGGAAAAA-----------AGCTCGTCGTG------------GAGACAGatcggtg-gtggtggtggagg-tgaAAAACCCAACAAAAca---taaaagaaaa-----atgaatcaatGA---AGCCAAGAACGG--------CGCAAAGTGCAA
i cb4.chrX              C 0 I 1464
s caeRem4.Crem_Contig0   1698759 346 -  4500979 AGTCCATTAATCA-GCGGACTGT----------TGTG-ACA---AACCA---TTCCGAA---TGTTGCGTTTCAAAAGCAcatatttcaacaaaatgGGCT--------------GGAAGCTGCCGCGAGTG---------------------TCTTGTAACGTGTTTGTGTCGAGTGCATTGTCAGTGATTGATGAGGGAGAACGAC----GAGTCCGTCCC-----AAGAAGCTCTTTCCCTTCACCCCTC-CTATC-GACAGTGTATCATTTGTggggaaatagaaaa----agaagaataaaga-----------aGCACGACGTGTGTAAGCCC-TCGTCACATAT-------TGGTGGAGCagt-atagaaaaatgaaaaatca---ggaagagaga-----aaaaatgaatag---aacaCAACACAGTAA-----TGTATTTTGC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     33067 379 -   201088 AGTCAATTAATTA-ACCGACTGT----------CGTGTTCA---AACCATTCTTCCCAAATTCATTGCGTTTCAAAGGCACATATTTCAACAAAATGAGCT--------------GGAAGCTGCCGGGAGGG---------------------TCTTGTAACGTGTTTGTGTCGAGTGCATCGCCAGTGATTGATGAGAGAGAACGAC-GAGAAGTCCGTCCA-----AAGAAGCT-----------CGTCGCTTCATC-GACAGTGTATCATTT-gtagggaaaaaagaagaggagaagaagaagaaaaagaataggaaGCACGACGTGTGTAAGCCCTTCGTCACATAGACCGA-TTGGTGGAGCAGt-agaagaatatgaaaaatcg---gaaaaaaaacgagCGAAAGATGAATAG---AATTGGGAACAATGGACTGTTTTGAATTACAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3055537 378 +  4147112 AGTCAATTAATTA-ACCGACTGT----------TGCG-ACA---AACCA---TTCCCGA---TGTTGCGTTTCAAAGACACATATTTCACCAAAATGAGCT--------------GGAAGCTGCCGGGAGGG---------------------TCTTGTAACGTGTTTGTGTCGAGTGCATTGCCAGTGATTGATGAGGGAGAACGAC-GAGGAGTCCGTCCT-----AGGAAGCT-----------CCTCGTCTCATC-GACAGTGTATCATTT-TGTGGGGAaaggaaaaagcaaaagaagaagaataggaaGCAGCACCACGACGTGTGTAAGCCCTTCGTCACATAGATCGA-TTGGTGGAGCAGTgggaagaatatgaaaaatcgacaaaaaaagaaagagt-aaGGGTGAATAGGACAAGAGGACACAATGGTCTATTTTGAATTACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   188174 332 +   591668 AGCCAATTAATTG-AACGACTGT----------CGTG-ACA---AATCA---TTC-GAA---TGTTGCGTTTCAAAAGCACATATTTCAACAAAATGAACT--------------GGAAAGTGGCGGGC-TG---------------------TCTTGTAGCATGTTTGTAGCGAGTGCATTGTCAGTGATTGATGAAGGGGAACGATGGAGGAGCCC--CAC-----AAGAGACG--GCTCTTCCACCAATCTCCATCTGACAGTGTATTATTC---------------------GAGGAGGAGCAG-----------AGCGAGACGTGTGTAAGCCC-TCGTCACA----CCGA-TTGGAGTAGTAGG-gtaagaaaagtaa---------aaaaaaaagaatgtgaaaagtggacag---acgggacggcgttgg-----gaaaaaaagaaa
i caeJap4.Scaffold17934 I 482 C 0

a score=-25514.000000
s ce10.chrX              4802778 123 + 17718866 ------------ACACAAAAGGACACCGTTTCTTTTTGTTCAACTACTTG------TTAATCA---ATATGAATCAGTTTATTCACTAAATTG-------------------------------------------------------ATAAAAGAACACG-AAATGAGTAAAGATTCTCAAATAATGTA------CAAAAGGCAG----------
s caeRem4.Crem_Contig0   1699105 159 -  4500979 -----------------ATAACAAATGTTATTCTATTGTATTCCTTCTTGGTACCATCCACCGTCCAGGCAAATGTTAATGAGGAgacaattgcaaaaaaaaacggatatAAATGAACAGAAGTGACAGAATCGGTCAG---------TTAAACAAATATCTAGATGAAGAAATA---------------------CACAAGTCGA----------
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold409     33446 119 -   201088 ------------------------AT-TTCTACCattgtttctcttccat------ttgatCA---ATACAAATGGTAATATAGAGTCAATTGCA-----------------------------------------------------TAAAAAACGGATGTAAATGAACAAAAGTAGAAGAATGGTACAACGCGTGAAGAGGAGA----------
i caeSp111.Scaffold409  C 0 I 30
s caePb3.Scfld02_0       3055915  97 +  4147112 ------------------------AT-TTTGACCATTGTTTCCTCTATTG------TCCAGTG---ATATGAATGTTAATA-AGAGTCACTCGTA-----------------------------------------------------TCGAAAACGGATgtgaaagaacaagaa---------------------aaagtgGACA----------
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17934   188506 188 +   591668 agaaaatgaactATTTTGCAATACAA-ttgtctttttctttttcttttt-------tttattg---tgatGAATAAAAATT-----CTAATTGTA------------CATAAGTGAATATACTTTGTAAATTTATTGTGTTGCTTTTTAGAAATACAAAACTAAATGCACATAAACGCCTGCGaggtcaattggcaaaaaggGGCACAGAAACCAA
i caeJap4.Scaffold17934 C 0 I 16
e cb4.chrX              10134164 1464 + 21540570 I

a score=68699.000000
s ce10.chrX              4802901 194 + 17718866 CAACAGATGTG-----AACTTTTCAGAGCG---------------------CAACACAT---------ACAAGCGACGTTCGTTAGTAGTAGTAGATTGTAAAAAGTTCGTGTAACAC---TG-----CAGA-GAAACTTAGTGTCAGGGTACC-GACGTGGTCTGTTTTTGATGATTTTACAACTGGCACGACGGTGGTAACGCTAAAAAAATCTGGCAGTCAGATGCAC----AAAAAG-TG
s cb4.chrX              10135628 187 + 21540570 CAACAGACGTAAGAACAACTTTTTCGAGAG---------------------CAACG--------------ACGTAACGTTCGT---TTCGGAAAGATTGT-AAAAGTTTGGTTAGGCCGCGAA-----CAGACAGAACTTTGTGCCAGGGTACC-GACTCCAGCTGTTTATGATGGTTTTACAGCTGCCACGACG------TTGCT-AAAAAATCTGGCAGGCAGTTGTAC----AAGAGT-TG
i cb4.chrX              I 1464 I 673
s caeRem4.Crem_Contig0   1699288 190 -  4500979 CAACAGATGTG-----AACTTCTCAGAAAA--------------AGTTGCTCAATGT-----------ACAAGTGACGTTCGT---AAGTAGCAGATTGT-AAAAGTTTGATTAGAAC---AG-----CGGA-GGAACTCGGTGTCGGGGTACCGGACACCGGCTGTTTATGATGGTTTTACAGCTGCCACGCGGAT----TCGCT--AAAAATCTGGTAGGCAGTTGCAC----AAGAAA-TG
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold409     33595 178 -   201088 CAACAGATGTG-----AACTTCTCGaa------------------------caaatttt---cgaaaaaaaaatgacgttCGT---TAGTAGCAGATTGT-AAATGTTTGATTAGAGT---AG----CCAGA-AGAACTTTGTG--------CC-AGTCACGCCTGTTTATGATGGTTTTACAACTCTTACCCGGTT----CCGCT--AGAAATCTGTGTGCCAGTTGCAC------AAAC-TG
i caeSp111.Scaffold409  I 30 C 0
s caePb3.Scfld02_0       3056032 185 +  4147112 CCAGATGTGTG-----AACATC-----------------------------CAACTTT----------AAAAGTGACGTTCGT---TAGTGGCAGATTGT-AAAAGTTTGATTAGAGA---CATACCCCTCG-AGAACTTGGTGTCAGGGTACC-GGCTCCGGCTGCTAATGATGGTTTTACAACTGCCACGCGGTT----CCGCT--AGAAATCTGGTGGTCAGTTGTACTCaaaaaaaCGTG
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold17934   188710 205 +   591668 TAACAGATGTG-----AACTTTTcagaaaagagaaagaaagagaagaaaaagaacgCCTGCACCACAGCTGAGCATCGTTCGT---TAGCAGAGGATTGT-AAAAGTATG------GC---AA----------GTCTCTTAATGTCAGGAAACCGGGCTCTGTCGCCTAATGATGGGTTTATAACTTGCACGCGGTT----TTGCT--AGAAATCTGGTGGTCAGTTGTAC----AAGAAG-TG
i caeJap4.Scaffold17934 I 16 C 0

a score=3170.000000
s ce10.chrX              4803095 15 + 17718866 GTCAGATTTACAACT
s caeRem4.Crem_Contig0   1699478 15 -  4500979 GCGATGTTTATGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     33773 15 -   201088 GTAAGTTTCACAATT
i caeSp111.Scaffold409  C 0 I 168
s caePb3.Scfld02_0       3056217 15 +  4147112 TTACATTTTACATCT
i caePb3.Scfld02_0      C 0 I 513
s caeJap4.Scaffold17934   188915 15 +   591668 GTAAATTTTACGAGT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10135815 673 + 21540570 I

a score=271.000000
s ce10.chrX              4803110 4 + 17718866 CGGA
s caeRem4.Crem_Contig0   1699493 4 -  4500979 AGGA
i caeRem4.Crem_Contig0  C 0 I 310
s caeJap4.Scaffold17934   188930 3 +   591668 -GTA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3056232 513 +  4147112 I
e cb4.chrX              10135815 673 + 21540570 I
e caeSp111.Scaffold409     33788 168 -   201088 I

a score=423.000000
s ce10.chrX              4803114 15 + 17718866 CTA-----TACATTTGATCT
s caeJap4.Scaffold17934   188933 20 +   591668 ctaaaattttcttttgatCT
i caeJap4.Scaffold17934 C 0 I 107
e caePb3.Scfld02_0       3056232 513 +  4147112 I
e cb4.chrX              10135815 673 + 21540570 I
e caeSp111.Scaffold409     33788 168 -   201088 I
e caeRem4.Crem_Contig0   1699497 310 -  4500979 I

a score=0.000000
s ce10.chrX              4803129 847 + 17718866  
e caePb3.Scfld02_0       3056232 513 +  4147112 I
e caeJap4.Scaffold17934   188953 107 +   591668 I
e cb4.chrX              10135815 673 + 21540570 I
e caeSp111.Scaffold409     33788 168 -   201088 I
e caeRem4.Crem_Contig0   1699497 310 -  4500979 I

a score=376.000000
s ce10.chrX              4803976 10 + 17718866 TTTTCGAACG
s caeJap4.Scaffold17934   189060 10 +   591668 tttaccaaca
i caeJap4.Scaffold17934 I 107 C 0
e caePb3.Scfld02_0       3056232 513 +  4147112 I
e cb4.chrX              10135815 673 + 21540570 I
e caeSp111.Scaffold409     33788 168 -   201088 I
e caeRem4.Crem_Contig0   1699497 310 -  4500979 I

a score=-36.000000
s ce10.chrX              4803986 16 + 17718866 ----AAAACCAACGTTTCAA
s caePb3.Scfld02_0       3056745 16 +  4147112 ----aaaagaaacatggcAT
i caePb3.Scfld02_0      I 513 C 0
s caeJap4.Scaffold17934   189070 16 +   591668 aaaaaaaacgaatata----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10135815 673 + 21540570 I
e caeSp111.Scaffold409     33788 168 -   201088 I
e caeRem4.Crem_Contig0   1699497 310 -  4500979 I

a score=2811.000000
s ce10.chrX              4804002 27 + 17718866 AAAGCGACCAATTAATTAAGAATATTG
s caeSp111.Scaffold409     33956 26 -   201088 AACGAGAGCAATTAATTAGGTCCAAT-
i caeSp111.Scaffold409  I 168 C 0
s caePb3.Scfld02_0       3056761 26 +  4147112 AATGGGACCAATTAATTAGGTCCAAT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   189086 15 +   591668 ---ATAGCCAATTAATTG---------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10135815 673 + 21540570 I
e caeRem4.Crem_Contig0   1699497 310 -  4500979 I

a score=9268.000000
s ce10.chrX              4804029 11 + 17718866 AGACAAATGTT
s caeRem4.Crem_Contig0   1699807 11 -  4500979 AAACAAACGTT
i caeRem4.Crem_Contig0  I 310 C 0
s caeSp111.Scaffold409     33982 11 -   201088 AGACAAATGTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3056787 11 +  4147112 AGACAAATGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   189101 11 +   591668 AGACAAATGTT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10135815 673 + 21540570 I

a score=152640.000000
s ce10.chrX              4804040 652 + 17718866  
s cb4.chrX              10136488 827 + 21540570  
i cb4.chrX              I 673 C 0
s caeRem4.Crem_Contig0   1699818 735 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     33993 687 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3056798 681 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   189112 711 +   591668  
i caeJap4.Scaffold17934 C 0 I 382

a score=-3407.000000
s ce10.chrX              4804692 27 + 17718866 AACTGATTTTTT-----------TTCTCTAGCAAACTG-
s cb4.chrX              10137315 28 + 21540570 tcttcagttttt-----------ttttttttgaaaagtg
i cb4.chrX              C 0 I 1408
s caeRem4.Crem_Contig0   1700553 39 -  4500979 ttcctcttttttgaaactatcagtttttttgtaaaagaa
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409     34680 28 -   201088 tccctttttctt-----------tcctcggtttgaagtt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3057479 18 +  4147112 TTCTcctttttc-----------t----------aagtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   189823 382 +   591668 I

a score=-3238.000000
s ce10.chrX              4804719 25 + 17718866 TT--AAGAGAATGTGGAAAGCAACTAG--------------
s caeRem4.Crem_Contig0   1700596 25 -  4500979 ----------------gaagaaaaagagggaaaatgaCAAG
i caeRem4.Crem_Contig0  I 4 I 199
s caeSp111.Scaffold409     34708 25 -   201088 tt--ttgagaatgaatgaagaaaaaaa--------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3057497 27 +  4147112 tttcttgagtttttgtGCGGgaacaga--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   189823 382 +   591668 I
e cb4.chrX              10137343 1408 + 21540570 I

a score=12252.000000
s ce10.chrX              4804744 157 + 17718866 A---AAAACGTAGCGAAAAAAAATTAAAATTATTGCAAACTGTTCAAGTCACAT--ATTTCAACGCG--------ATTAGTT--------------------ACTGTGTCA--------------CAGCGGGATGTCAG-CACAAAGGACATTAATTGAAATGTATGGAAAACTGAACAACGGCGTTGAAACATTGCGGGAAAAT
s caeSp111.Scaffold409     34733 192 -   201088 aaacaaaaatcag-gagaaaacataaaagaaac----------tcacagaacataaatttcaaatcggTTTCGG-TTTAATTCGGACTACTGGTGGTGAAACACAGTGTCAAGATGGCAACAACGCAGCAGGTGTCCAG-CACAAaggaaatcaattgaaacgTATTGAAAATTAGTCGACTGAAGTTAATAGATGCGGGAAAGt
i caeSp111.Scaffold409  C 0 I 104
s caePb3.Scfld02_0       3057524 194 +  4147112 aatgaaaaaaaagagagaaagaacagAAACAACT------TATTCGCGGaacataaatttgaaaatggtttcgGTTTTAATTTAGACCACTGGTAGGGAAG-ACATTGTCAAGATGG----ATCACAGCAGGTGTCCGGTCACAAAGGACATGAATTGAAACGTATTGAAAATTAGTCGACTGTGTTAAATGGTTGCGGGAAAGT
i caePb3.Scfld02_0      C 0 I 184
e caeJap4.Scaffold17934   189823 382 +   591668 I
e cb4.chrX              10137343 1408 + 21540570 I
e caeRem4.Crem_Contig0   1700621 199 -  4500979 I

a score=0.000000
s ce10.chrX              4804901 693 + 17718866  
e caePb3.Scfld02_0       3057718 184 +  4147112 I
e caeJap4.Scaffold17934   189823 382 +   591668 I
e cb4.chrX              10137343 1408 + 21540570 I
e caeSp111.Scaffold409     34925 104 -   201088 I
e caeRem4.Crem_Contig0   1700621 199 -  4500979 I

a score=1408.000000
s ce10.chrX              4805594 51 + 17718866 GATAGTTCTACTTTTTATCAATCTGCTAACAAATATAGATGCAGTTTGAAA
s caeRem4.Crem_Contig0   1700820 51 -  4500979 gaaaaatcaacttttgattattttgataCTGAATGTCAAAGAAGCTTCAAA
i caeRem4.Crem_Contig0  I 199 C 0
e caePb3.Scfld02_0       3057718 184 +  4147112 I
e caeJap4.Scaffold17934   189823 382 +   591668 I
e cb4.chrX              10137343 1408 + 21540570 I
e caeSp111.Scaffold409     34925 104 -   201088 I

a score=-1935.000000
s ce10.chrX              4805645 16 + 17718866 -TAAAACAACAA------------------CCCAT-
s caeRem4.Crem_Contig0   1700871 36 -  4500979 TTGGTataagaaaacggaaaatataCAACGTCTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     35029 16 -   201088 -TGAAgcaagaa------------------ttttc-
i caeSp111.Scaffold409  I 104 C 0
e caePb3.Scfld02_0       3057718 184 +  4147112 I
e caeJap4.Scaffold17934   189823 382 +   591668 I
e cb4.chrX              10137343 1408 + 21540570 I

a score=2337.000000
s ce10.chrX              4805661 19 + 17718866 AAATAGTTCAAATGTCCTT
s cb4.chrX              10138751 19 + 21540570 aaaaagtgcaATGGTCTTT
i cb4.chrX              I 1408 C 0
s caeRem4.Crem_Contig0   1700907 18 -  4500979 TTAAAGTTCGGACGTC-CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     35045 18 -   201088 -aaaagttcatacgtactt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3057718 184 +  4147112 I
e caeJap4.Scaffold17934   189823 382 +   591668 I

a score=-617.000000
s ce10.chrX              4805680 7 + 17718866 ACAAATG
s cb4.chrX              10138770 7 + 21540570 Gccagag
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1700925 7 -  4500979 GAAACAA
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold409     35063 7 -   201088 ttcaaaa
i caeSp111.Scaffold409  C 0 I 15
s caeJap4.Scaffold17934   190205 7 +   591668 ACAAACG
i caeJap4.Scaffold17934 I 382 I 1
e caePb3.Scfld02_0       3057718 184 +  4147112 I

a score=352786.000000
s ce10.chrX              4805687 1161 + 17718866  
s cb4.chrX              10138788 1261 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1700943 1346 -  4500979  
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold409     35085 1268 -   201088  
i caeSp111.Scaffold409  I 15 C 0
s caePb3.Scfld02_0       3057902 1239 +  4147112  
i caePb3.Scfld02_0      I 184 C 0
s caeJap4.Scaffold17934   190213 1297 +   591668  
i caeJap4.Scaffold17934 I 1 C 0

a score=-1030.000000
s ce10.chrX              4806848 21 + 17718866 AAAATAATTCTAGAGTTAGAT
s caeRem4.Crem_Contig0   1702289  8 -  4500979 gaaaaatt-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3059141 21 +  4147112 GAAAAAGTCCCTCGTTTAGAT
i caePb3.Scfld02_0      C 0 I 2681
s caeJap4.Scaffold17934   191510  8 +   591668 GAAATAAC-------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10140049  0 + 21540570 C
e caeSp111.Scaffold409     36353  0 -   201088 C

a score=-4323.000000
s ce10.chrX              4806869 88 + 17718866 GCCAttaaatgagtaacggttatgagtgttttg--agtatatatacagaaagcgcacgaattaacgagctttgcaatgaagtttctaaca
s caeRem4.Crem_Contig0   1702297 26 -  4500979 -----------------------------------------------gaaaacccattattttctgagattta-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   191518 56 +   591668 -------------------------ATGTTTTGTTAGTATGTAGAT-GAAAACAAATTGACC------CCTTGAAATgtaatttctca--
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3059162 2681 +  4147112 I
e cb4.chrX              10140049  0 + 21540570 C
e caeSp111.Scaffold409     36353  0 -   201088 C

a score=-4508.000000
s ce10.chrX              4806957 43 + 17718866 gaaactttttaaaaagttttttttaatcgaaatttgaattttt
s cb4.chrX              10140049 27 + 21540570 gaaatttttttatatgtttGTTGTTGC----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1702323 21 -  4500979 ----ttttgttgattatcttctttt------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   191574 13 +   591668 -----ttttcccaTCGCA-------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3059162 2681 +  4147112 I
e caeSp111.Scaffold409     36353  0 -   201088 C

a score=-6812.000000
s ce10.chrX              4807000 36 + 17718866 gaaaaaacctg-ccaaattctagctaaaaACTGCAGC-
s cb4.chrX              10140076 18 + 21540570 ------------CCCAATTCTGAGAATAAA--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1702344 18 -  4500979 ------------tctaattgtGTACATGAA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     36353 30 -   201088 Ggaaaaccccttttttattcagttcagcaa--------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   191587 18 +   591668 -------------TCCATTGAAAACCGCAA-------C
i caeJap4.Scaffold17934 C 0 I 16
e caePb3.Scfld02_0       3059162 2681 +  4147112 I

a score=-2254.000000
s ce10.chrX              4807036 34 + 17718866 AGTCCGAACTTTTTTTTGAATGGTATCAGCTGCT
s cb4.chrX              10140094  6 + 21540570 ---------Gttgtt-------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     36383 13 -   201088 ---------tatttttttcatg------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3059162 2681 +  4147112 I
e caeJap4.Scaffold17934   191605 16 +   591668 I
e caeRem4.Crem_Contig0   1702362  0 -  4500979 C

a score=-34556.000000
s ce10.chrX              4807070 170 + 17718866 GCGAACCGGAAAAGGCAAAGGCCGGGCT-----TTTAGCTAA--AATTAACTCTTTTTTTTTGAAATTTTTTGAGAAGTCTCATTGCAAAATGTTCAAAATACCTAAAACCTA------TAGTTTTCCTTTAAATTCAAATTTCGGAAGAGAAAGTTGATAGTTCTGATAAGGTGGGTGATGT
s cb4.chrX              10140100  38 + 21540570 ------------------------------------------------------------tttagaacttttgggA----------------------------TGTCATCCA------TCA------------------------------AGATCAATTA---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1702362  65 -  4500979 ------------------------------------------------------------TTGATAAGGATGATGA----------------------------TAGAATCCA------TCATTCCTTCCTACACCCtttttt---------tGGTTGATTG---------------TGAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     36396  30 -   201088 ------------------------------------------------------------tttctaTATTTGGGAG----------------------------TGATA-------------------------------------------AGGATGATG----------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   191621 114 +   591668 --------------GCGAACATCGAACGGTACATTTATCAAATCATCCAACTATCTA---TGTATACTtgttgtaa----------------------------tatatttcctttttttaatttctccaTGAAAACGTTCTC---------AATTTTGTTG---------------CAACTT
i caeJap4.Scaffold17934 I 16 C 0
e caePb3.Scfld02_0       3059162 2681 +  4147112 I

a score=-90249.000000
s ce10.chrX              4807240 288 + 17718866 AGAGAATCCATCATCCTTCAGATTT------CAAAGAAAACTTGTGACATCTACGAGAAATT--------GAA-AACCTCC--TCATCAAACTATACAT---GGTGTAATGTTCGGTTT---TTCTATC------TCTTTTTTTAGATTTTTTCTCAAATGAGAACGTTCCGAAAGTTGCAACAAATTGGC-------------------------AATCAT--------------TTAATCAGTCT-----ATG-----------------------TTTTTAAGGT--TGATAAAACCAAATTTTGGCAT---CAACAAAGAAA-----TGGAT--CAAAAGTCCCAATTTTTGGAAAAAAAAA--------CTCTGTTGACGATGCTCACA----------------ATTCTAA---------TTG
s cb4.chrX              10140138 254 + 21540570 -------------------------------AGTATCGAACTTGTGACATGAACAC-TAATTGCCGACAGGAACAAAAAACCGTTATCAAACTATACTTCGGAGTGTAATGTTCG---T---CTctatcttcaattttttttctaggt-----------taggAACGGTTCTA-------------------------------TATATTTGCAACATTCTTGACTTTGACAT---CCGATCAGTTTGATTCATG----------------------ACTTTCAAACTTGTGCCCAGATAAAATTC--TCAGTTTTGATTAGGAAA--TCGAAAATccccaa--------------gaaaaaaaaa--------gagtcatgagg--------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1702427 329 -  4500979 -------------------------------AAAATCAAACTTGTGACAGTGACACAAAATTGCCGACAGGA--AAAGAAC--TTATCAAACTATACAT---GTTGTAATGTTCggttt---ttctatc------tctctctcta-tt-----------tgaGAACGTTCCTAATTTTGCATCGAATTGATGATTGTCC--GCCTCTATCcgacaagttttt---ttttagatgtaCTGATTAGATTGATTTATGTTCCAATACTGGCGTATGATGTATATTAGAACCCATAAACAGAATAAGTTCTTTCGG---TgataagaaaactttttgaatctctAAAGAACTACTTTCCTGAGAAGTAAA--------ATAACTTGGAGATGACtatg----------------tttttga--------ctt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     36426 347 -   201088 AGAGAATCCATCATTCGTTTTGTTTGATGGTGAATTCAAACTTGTGACAGTGACAGGCGGTTTCCGATAGGAA-CAGTCGC--TTATCAAACTATACAT---GGTGTAATGTTCGGTTcacatctt---------ttttccatta-----------------gaGTGTTCCCAATTTTGCAACAAAAGAATGGCTGTCC--AATTCTATCTGACA-Gttttt---ttGGCG-----TTGATTGGTTTAATCAAAG----------TGTGACTACCATCGCATTAAGTTCCTGAGAACCCAAAG------------ATAAGAGTCAA-----GAACTTCCTAaagttctttcatttcaaaaatcagaaacctCTTCGTACTTGGAAATACCTACTATTA------------TTTGTAATGCGTGCTCTTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3061843 303 +  4147112 AAATAATCCGTCATCCATCTTGTTTAAATGTGAAATTAAACTT------GTGACAGGCG--------CAGGAA-CACTCAC--TTATCAAACTATACAT---GCTGTAAAGTTAGGTTT---TTCT---------AATCTCTTCA-----------------GAAC-------ACTTTGCAAC------ATTTCTGTCCTATATGTTATTCTTCA-GTTAGT--------------TTAATCAGTTTGCTA---------------------------GTATCAAGTCCCCAAGAACACAAAGTAT--TTAC--TATACGAAAGAA--TTCGAAATCCCGGAAGACACAAAACATGGAAAACAAGA---------------GGAGAAGTCTATAATTATTACTTTATAGCTTTCTGAAGCTTACtttt-
i caePb3.Scfld02_0      I 2681 C 0
s caeJap4.Scaffold17934   191735 164 +   591668 -------TCCCCTTCCACCA-----------TCATTCACATTTTTCATTCTAGCCgaca---------------aaaatcc--caa--aaattgaGTAT---A--------------------------------TCTATCATCA---------------------------------GGGACAAGTGGGA-------------------------AATGAT--------------TGAGATAGACAGA---AAA-----------------------------------CAATAACAGGAAA------------AGACACGTAAT--TCCCAATTTTCCAACCTTCACAATTCCTAATG---------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 I 70

a score=-11903.000000
s ce10.chrX              4807528 61 + 17718866 CACTTCGAAAAAA----GGTAAACAAAATGGTGACATTTTCA-----------------------ATAACAAG-----TTGTTATTAGCG--------ATA
s cb4.chrX              10140392 80 + 21540570 ------------------gaaaacagaatttcgtaaaatttt--cCTTCGGAATTATATACTACGTTGCACATAAAAGTTGTCCTTTTCAAGACTCT-CAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1702756 70 -  4500979 ---------------ttcgaaAACAAGATGACGATATATTTG--CTTTGCGAAtcttgagatttttcaaacat-----cTGTCATTATC---------TCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     36773 80 -   201088 TACATCTAAAACA--TTGGAAAACAGAATGATGGATATTTTG-------------CAGTGTAAAGTTAAACAC-----CTGTTattatcaaaacatt-ttc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3062146 80 +  4147112 ------gagaacattttgaaaaacaaaattgcgAAATGTTTGAacatt-----tccatcattttttgaaatac-----cag-----ATCACAAGATTCTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   191899 70 +   591668 I

a score=148467.000000
s ce10.chrX              4807589 218 + 17718866 ACACATACCACATTCTCCTCGTCTTCTTTTTCGGGAGTCGGTGATTTCTCTTTTTCA---GTTAACGAAAGTGATGACTCATTGGCTGGCGGCGAGTGCGACTGTTCACTCGGACTTGGAGCACTGACACTCACAGAGCTTGACGTCTGCTCTGACCAGAGTTGCACCTGATCCTGCTTC---ACAATCGCTGCC---ACTGCTGGAATGTTGTGAAGAGCCT-GAAA
s cb4.chrX              10140472 212 + 21540570 ACACTTACCACATTTTCCTCCTCGTCTTTCTCTGGAGTTGGAGACTGCTCCTTATCC---ATAGAAGAGATAGTAGAGTCGTTGGCAGGTGGAGAGTGCGACTGGTCACTTGGGCTTGGAACGCTCACACTAACGGAGCTCGATGTTTGCTCGGACCATAGTTGGACCTGTTCCTGTTCCTGTTTCACTGCGGCT---------GGGATGTTACCAAG---CT-GAAA
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   1702826 218 -  4500979 GCACTTACCACATTCTCCTCGTCGTCTTTTTCAGGAGAAGGAGATTTCTCCTTGTCC---ATTAGAGATAATGTTGAGTCATTGACAGGTGGGGAATGTGACTGGTCACTGGGGCTTGGAGCACTGACGCTGACTGAACTAGAAGTTTGCTCAGACCACAGCTGTACTTGCTCCTGTTTC---ACCATGGCGGCT---ACTGACGGAATGTTGTGAAGTGACT-GAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     36853 210 -   201088 a-actcACCACATTTTcgtcctcttctttttccatagacggagatttttctttttcc---------aacaCGGATGACTCATTAGCTGGAGGAGAATGAGATTGGTCACTTGGGCTGGGAGCGCTGACACTGACAGAACTGGAGGTCTGTTCTGACCACAATTGAACTTGCTCTTGTTTG---ACCATAGAGGCC---ATTGATGGAATGTTATGGAACGgct-gaa-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3062226 218 +  4147112 ATACTTACCAcattctcttcctcttccttttctggAGTTGGAGatttttccttctcc---attAGTAATATTGATGATTCATTGGCTGGAGGTGAGTGGGATTGATCACTAGGGCTAGGCGCACTGACACTGACAGAACTGGAAGTTTGTTCTGACCATAATTGGACTTGCTCTTGTTTC---ACCATAGCAGCT---ACTGACGGAATGTTGTGAAGAGACTGGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   191969 222 +   591668 GCACTTACCACAGCGTCTTCTTCCTCTTTCTCAGGAGTAGGTGATTTTTCCTTATCCTCCGTCAAAGACAGAACAGACTCATTAGCCGGTGGAGAGTGTGACTGCTCACTGGGACTTGGAGCACTGACGCTCACAGAGCTAGATGTCTGCTCAGACCAAAGTTGAACTGGCTCTTGTTTT---GCAATGGCTGACGAGATAGCTGGCATATTGTGGAGTGGct-aa--
i caeJap4.Scaffold17934 I 70 C 0

a score=-6170.000000
s ce10.chrX              4807807 20 + 17718866 TGCAAAGGTTAAT------TAGCGAA
s caeRem4.Crem_Contig0   1703044  7 -  4500979 AACTGGA-------------------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold409     37063 26 -   201088 aacagttttttttctacagtatccaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3062444 24 +  4147112 AACAAAGTTTAAAAGAC--TAGACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   192191  7 +   591668 -------------------taattaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10140684 22 + 21540570 I

a score=63450.000000
s ce10.chrX              4807827 171 + 17718866 -------AGTGTGA------AGGTTTCATTG---ATACCGGCAATGGAATATTTGGAATGTTGAGCATTGGTCTTGGGAT---GTTTTCTCCGAATCCATTGAA---CTGGTTCATTTGGTTTAGACACATCAACAAAATATCTGGGTTAGCCATAGGGAAGCT---TGGTGGCTGA--AAAT----AAAACCATG----GAATCA
s cb4.chrX              10140706 179 + 21540570 -------AGTCTCA------AAATGTAATTAT--TTACCGGAAGTTGGACGGATGGGATGTTAATCA---ATCGTGGGAT---GTTTTCTCCGAACCCTCCAAA---CTGATTCATCTGGTTGAGGCACATCAACAAGATGTCTGGGTTGGCCATCGGGAAAGGTGATGGAGGCTGA--AATGTGTAATAGTGACTAAC-TGAtca
i cb4.chrX              I 22 I 14
s caeRem4.Crem_Contig0   1703063 169 -  4500979 -------aaactga------aaataggaCTAT--ATACCGGTAATGGCATGCTTGGGATGTTGAGCA---ATCGAGGGAT---ATTTTCTCCGAACCCTCCAAA---CTGATTCATTTGGTTGAGACACATCAACAATATGTCGGGACTTGCCATTGGGAAACT---TGGAGGCTGT--AATATAC-ACAGTG-------taaaca
i caeRem4.Crem_Contig0  I 12 I 55
s caeSp111.Scaffold409     37089 163 -   201088 ---------------------tTAATGATTAT--TTACCGCAAGTGGAATATTTGGGATGTTGAGAA---GCCGTGGAATTGAGTTCTCACCGAACCCTCCGAA---TTGATTCATTTGGTTCAAGCACATCATCAGAATATCCTGGCTAGCCATTGGGAAGCT---TTGTGGCTGA--AATG----AGAAGTAT-----AAAACA
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3062468 173 +  4147112 ---------------------AAAGTTATTAT--ATACCGGAAGTGGAATATTGGGCATGTTGAGTA---ATCGAGGAATTGAGTTTTCACCGAAGCCATTGAAATTCTGGTTCATGTGGTTCAAGCACAGCAACAAAAGGTCAGGATTTGACATTGGGAAGCT---TGGAGgctaaacaaaa----acaagacttCACAAAAACA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   192198 186 +   591668 attattcaACTTCAACTGATAAAAACAATTCTTCTTACCGGAATCGGTAGATTTGCCAGATTGAGAATATTTCTAGGGAT---GTTCTCTCTGAATCCTCCAAA---CTGATTTACATTTGACAAACACATCATCAGGATATCCTGGCTGATCATTGGAAACGT---TGGGGGCTGA--ACAA----AAAACTTAT----AAAAT-
i caeJap4.Scaffold17934 C 0 C 0

a score=-9240.000000
s ce10.chrX              4807998 40 + 17718866 TGGAAATGCTTTTTATTCA-----------AAAAGAAACGA-------AAGAAAGATT
s cb4.chrX              10140899 25 + 21540570 ctaaaaggttctttgg---------------------------------aaaaaaatt
i cb4.chrX              I 14 I 8
s caeSp111.Scaffold409     37258 16 -   201088 CATAAATGTCTTTTCT------------------------------------------
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3062644 12 +  4147112 ----AATGTTCATTTA------------------------------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   192384 54 +   591668 ----AAAGATCTTGGGCGAGACAGCACcggaaaaaaaccggaaaaaccaaaaaaaata
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1703232 55 -  4500979 I

a score=142052.000000
s ce10.chrX              4808038 286 + 17718866 CTTACAATTTTGTCGAATTCAGAACTTGTGGAGTTATCGGAGGTGTCGGTGTTTGGAGGGCTAAACTCTGATTTCACCATTCTTTGCAACTGTTCTGTTATGCTCATGTTCGCAGGATCCA---TTGGCAAA------------GCATTTCCATTCGACAGCTTCTTCCTTTTTGGCGTGTTTTCTTTTTTCGGAGAAGACTGAAAATCAGAATGAGAAATAAG-------AGTTCACGTTCAGGATATCACATGATGAGAGAGATTCCACGGAAAGTGC-----GTCTCTTGGGGCAACCGAATTAAGCTCC
s cb4.chrX              10140932 259 + 21540570 cTCACAATTTTATCAAACTCGGATGAGGTCGAGTTTTCTGAGGATTCTGTGTTTGGTGGGCTGAATTCGGTCTTCACCATTCTTTGCAATTGCTCCGAGATGCTGATGCTCTCTGGATCTGCTTCTGGTGAC------------GCGTGTCCATTTGATAACTTCTTCCGCTT---agcgttttcttttttcggagAACCCTGAAA-------------------------AGTTCGTTTTCAAGATGTCATCTAAT--------TTCACGGAAAAGCACGCGTTGTCTCACGGGGCAACC------AGCTCc
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   1703287 263 -  4500979 CTCACAATTTTGTCGAATTCTGAGGATGTTgaattgtctgaagtatcagTGTTCGGAGGGCTGAACTCTGTTTTCACCATTCTTTGTAACTGTTCTGATATAGTTAAACTAGCAGGGTCCA---TAGGTAGG------------ACGTTTCCATTTGATAACTTCTTCCTCTTGGCagcattttcttttttcggagaaCCCTGAAAA----------------ACAGACATAGTTCATTCTCGGGATGTCAcatgat--------tttgagaaaaagtac-----GTCTCACGGGGCAACC------CACtcc
i caeRem4.Crem_Contig0  I 55 C 0
s caeSp111.Scaffold409     37274 253 -   201088 CTCACAATTTTgtcaaattcagaagatgtcGAGTTATCTGAAGTGTCAGTGTTCGGTGGGCTGAATTCAGTCTTA---ATTCTTTGTAATTGTTCCGAGATGCTCAAATTAGCAGGGTCCA---TTGGTAAT------------GCGCTTCCGTTAGCTGCCTTCTTCCTCTTGGATGCGCTCTCTTTTCTCGGTGACGACTGGAAA----------------A-------AGTTCATTCTCAGGATATCACatgaa--------ttcgaagaaaagtgC-----GTCTCACGGGGCAACG------AGCTcc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3062656 268 +  4147112 CTCACAATTTTGTCATACTCAGAAGATGTCGAGTTATCTGAGGTATCAGTGTTCGGAGGGCTGAACTCTGTCTTAGCCATTCTCTGTAACTGTTCCGATATGCTAAGGTTAGCTGGGTCCA---TTGGTAGTGCATTCGCAGTCGCATTTCcgtttgacaactttttcctcttggatgcgttctcttttttcggtgaattctgaaaac---------------a-------agttcATTCCCAGAATGTCAtatgat--------ttc-cagaaaacttg-----gTCGCTTGGGGCAACT------AGCTCc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   192438 216 +   591668 ctcacaatCTTTTCAAATTCAGAAGTTGTTGAATTATCTGAAGTGTCTGTGTTGGGTGGACTGAATTCAGATTTAACCATTCTTTGAAGTTGCTCGGAAATGGACAAATCAGCTGGATCAA---CTGGCAAA------------GAAGCACCGCTAGCAagctttttcttctttgcCGCAGATTCTTTTTTCGATGAAGACTGCAATAGAAAAACGGTA----A-------AATTGAACCCT-----------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 I 44

a score=24957.000000
s ce10.chrX              4808324 78 + 17718866 GAGAACGA---GAAAAACATCACCTAATAAGGCTCAGG-------TTCTGCTC---GCTAATCATGTGTTACGTT-------------TCCGTGTAATCTGAAG
s cb4.chrX              10141191 86 + 21540570 gagaaatat--gaaaaacatcATCTAATAATGTTCTGCTCCGATCTCTTTCGC----CTAATAACATGTTACAATGAA----------CGCC--TTGTCTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1703550 97 -  4500979 gagaaatgga-aaaaaacatcATCTAATGATGTTCTGTTCCG---TTTTTCTC---ACTAATAATGTGTTACAAAGAACCATTTTTCTCGCCTATTGTCTGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     37527 92 -   201088 gagaa---aacgaaaaacatcATCTAATGATGCTCGATTcctg--tttttctc---attaattACATGTTACAAAGAACCATTC----TACGTATTGCCTGGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3062924 92 +  4147112 gagaatttgatgaaaaacatcaTCTAATGATGTTCTGTTCTTG--GTTTTCCCCCTACTAATAATGTGTTACAAAGAACCAT----------TATCGTCTGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   192654 44 +   591668 I

a score=243360.000000
s ce10.chrX              4808402 244 + 17718866 TTACA----TCTCTTACCTCAGAATCGTCATGTCTTGTCTGGAAATGAAGGAGAAGACGTCGCGAATTGGCGAACATCAAATTACATCGCTTACATGACGCGGGATTTGTTGACGAAATTGTGTGCGTTTCTTCCAAGTGTGCTCGGAGTGCATTGTGCTGACTAAACTGCATGTTACATTGTGATACTGGACAGTCGAAACCAAAACCCGTTTTGATATGTGTCATTGAATGCTCTTGCATCTGAAA
s cb4.chrX              10141277 244 + 21540570 TTATA----GTAGTTACCTCATTCTCGTCATGTCTCGTCTGGAAATGAAGGAGTAGCCGTCTGGAATTGGCGAACATCAAATTACAGCGTTTGCATGACGCAGGATTCGTCGCTGATATCGTGTGTGTCTCCTCTAAGTGTGCTCGAAGTGCATTGTGCTGACTGAACTGCATTACACATAATGAAACTGGACATTCGAAACCGAAACCCGTTTTGATATGAGTCATCGAGTGCTcttgcatctgaaa
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   1703647 244 -  4500979 TTATG----TTCGTTACCTCAGGCTCGTCATGTCTCGTCTGGAAATGAAGGAGAAGACGTCGAGAATTGGCAAACATCAAATTACATCTTTTACATGATGCAGGATTCGTCGACGATATCGTGTGTGTTTCCTCTAAATGTGCTCGAAGTGCATTATGCTGACTGAATTGCATATTACACAATGAAACAGGACAATCAAATCCGAAACCCGTCTTGATATGAGTCATGGAGTGCTcttgcatctgaaa
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold409     37619 248 -   201088 TTTTGGTTTGTTCTTACCTCAGCCTCGTCATGTCTTGTCTGGAAATGAAGTAGGAGGCGTCGAGAGTTGGCGAACATCAAATTACATCTCTTACATGACGCAGGATTTGTTGACGATATTGAGTGAGTATCTTCCAAGTGCGATCTGAGTGCATTGTGCTGACTGAACTGCATATTACATAAGGACACCGGACAGTCGAACCCAAAACCCGTCTTGATGTGCGTCATTGAATGCTCTTgcatctgaaa
i caeSp111.Scaffold409  C 0 I 76
s caePb3.Scfld02_0       3063016 244 +  4147112 TAATG----CTCATTACCTCAGACTCGTCATGTCTtgtctggaaatgaagaaggaggCGTCGCGAGTTGGCGAACATCAAATTACACCTTTTGCATGACGCAGGATTTGTTGACGATATCGTATGAGTATCCTCTAAGTGTGATCTGAGTGCATTGTGCTGACTGAACTGCATATTACATAATGACACAGGACAGTCGAAGCCGAAACCCGTCTTAATGTGCGTCATGGAATGCTcttgcatctgaaa
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   192698 244 +   591668 TCCCC----CCACCTACCTCTGAGTCGTCATGCCTAGTCTGATAATGAAGTAGAAGCCGTCGTGAGTTTGCAAACATCAAATTACATCTTTTGCATGACGCAGGATTGGCTGATGAAATGTTATGCGTCTCCTCCAAATGAGCTCGGAGAGCATTGTGCTGACTGAACTGCATAGTGCACAGGGACACTGGACAATCGAAACCAAAACCCGTCTTGATGTGAGTCATTGAATGCTCTTGCATCTGTAA
i caeJap4.Scaffold17934 I 44 C 0

a score=-19550.000000
s ce10.chrX              4808646  62 + 17718866 -----GTTAT-AGGTTTATTTTAAGTTACATGTTTAAAA------------------------CATGACTACGGTAT-------------GTTTT---------------------TAACATCTAA
s cb4.chrX              10141534  91 + 21540570 -----CATATATGTTTCAC-ATAAGCTAACTGTGT-----------------------------AAGCCTTCTTTGTCTTGCGCCTAATTGTTCCCGCTCCGGTTTTTATTTTGTGTATTGTctta
i cb4.chrX              I 13 I 1
s caeRem4.Crem_Contig0   1703905  52 -  4500979 -----TCTAT-TGTCCCCC---------aatatgt----------------------------------ttttttgt----caACACACTATTCC---------------------GATTGTCTTA
i caeRem4.Crem_Contig0  I 14 I 1
s caePb3.Scfld02_0       3063267  61 +  4147112 -----ggTGT-TGATTCAT---CAATTGTCCCTGT------------------------------TGCCTCTTCTGT---ACATCAAA--ATTCT---------------------TATTGTCTTA
i caePb3.Scfld02_0      I 7 I 1
s caeJap4.Scaffold17934   192942 101 +   591668 TTAAAAATCG-Tgttccct---gatttttttttgtataaaactttttgccccccccccccctccttccttcctttcttcctCTTTATCACATTCC---------------------GATCAAGTAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     37867  76 -   201088 I

a score=185253.000000
s ce10.chrX              4808708 521 + 17718866  
s cb4.chrX              10141626 418 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1703958 504 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     37943 509 -   201088  
i caeSp111.Scaffold409  I 76 C 0
s caePb3.Scfld02_0       3063329 487 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   193043 555 +   591668  
i caeJap4.Scaffold17934 C 0 I 41

a score=-5768.000000
s ce10.chrX              4809229 42 + 17718866 CTTGAAGA-----AATGGTTGATGGGC------ACTGCGGCAGT---TCCCTGCCA
s cb4.chrX              10142044 43 + 21540570 --AGAAAA-----GAAGCGCGCCGCGT------cttccaatttctttttctttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1704462 49 -  4500979 --AGAATG-----AGAGAGCGCTCGGTGAATTGTTTAcggtgtcttcttctttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     38452 46 -   201088 --aagaga-----agacaTTTCTTTGGAAATGGTTGACGGCGTC---TTCGTTTTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3063816 51 +  4147112 --agaaaagcgATGGGTAAATATCTGAAGAAGTCTTACGCCATC---TACGCTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   193598 41 +   591668 I

a score=381063.000000
s ce10.chrX              4809271 762 + 17718866  
s cb4.chrX              10142087 855 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1704511 908 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold409     38498 871 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3063867 863 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   193639 792 +   591668  
i caeJap4.Scaffold17934 I 41 C 0

a score=-14453.000000
s ce10.chrX              4810033 47 + 17718866 AAAGGGAAAATCTATGTTTTTTTTGGTTTGGTTTC--TCGGA---AGATTCT--------------
s cb4.chrX              10142942 14 + 21540570 ------------------------------AATAC--TCGGA------CCCG--------------
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold409     39369 23 -   201088 --------GACC----------------CCGTTTC--CCTAA---CCATCCG--------------
i caeSp111.Scaffold409  C 0 I 15
s caePb3.Scfld02_0       3064730 28 +  4147112 --------AAACAA--------------TTGGGAC--CCCAACATCAATCCG--------------
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold17934   194431 50 +   591668 -------------ATCCCATCGTTCTCTTCGTTCCGTTCTGA---CAAACCGAAACCACCAACGCA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1705419 47 -  4500979 I

a score=183367.000000
s ce10.chrX              4810080 348 + 17718866 GCCTTAACCAAT-----TAGTATGACACCGGCTCACATGAAAGGCAACATCCTTAAGAAGAAAAGCCAATATATGAGGAGCCTGCCT----------CCTTCT-CCCATACCACTC--------CACT--ACTACTCATCCCGATGACCGTTCGGGAAGTGATGGGATTGGCCGTCGGAAC--------AAAAAACAGTA-GGGTCAAGTGAGAGACGCAGTTA--ACTGGACAGTAGATAGAAAGTAAACAGTAGTTTGTGAGAAAAGCGGCATGGAGC---GAGTGGGAGAAGAGAAAAGGT----TCACGGA--GTGTTGACTTACAGGACCCACCTTA-CAAG---GAATTGATGAAA-----AGTGGA-----AAAGAGGGAAATT---------------GAAAAGACTTTCATATC
s cb4.chrX              10142977 337 + 21540570 CCTTTAACCAAT-----TAGGATGACACCGGCTCTCATGAAAGGAAACATCCTTAAGAGGAAAAACCAATAT--GCGCG----GTCC----------CTCTCC-CCCATACCACTCTTATCCCTTACT---TGACTATTCCCGATGACCGTTtgggaagtg----------------aaaa--------aaaaaacagtatgGAATAGGTGAGATGCGCAGTACATACTGG--------TCGAAGGTAAACAGTAGTTAGTGAGAAAAGCGGCAAGGAGCCGAGGATGGTGATAGGAGAATGGTAAAGGTAGTGG--TTGTTGACTTACTGGACGTACAGTA-CTGC---GAGTCTtgga-------agtagaagaa-gaagaggatgatc---------------AAAATAAGTTGGTTGCC
i cb4.chrX              I 21 I 12
s caeRem4.Crem_Contig0   1705466 358 -  4500979 GCCTTAACCAAT-----TAGGATGACACCGGCTCACATGAAAGGCAACATCCTTAAGAGGAAAAGCCAATAT--GAGGAGC--GTCG----------TCTTCT-CCCATACTACTCTTATCC--TACTCGACGACTCTTCCCGATGACCGTTCGGGAAGTGATGGGTTCGGAggacaaaaacac-----aaaaaacagtA-GAGATAAATAAGAGACGCAGTAA--ACTGGACAGTCAATAGAAAGTAAACAGTAGTTAGTGAGAAAAGCGGCAAGAAGC---GGATGGGTGGAAGAGAAAGGT-----TATGGA--GTGTTGACTTACTGGACCCATCTCG-CTGG---GAAT-------------GGTAGAAGAATAAATCGGATATTTT-GTAGAGGG----AAACATTACT---TTTTC
i caeRem4.Crem_Contig0  I 47 I 14
s caeSp111.Scaffold409     39407 384 -   201088 TC-TCAACCAAT-----TAGAATGACACCGGCTCACATGAAAGGCAACATCCTTAAGAGGAAAAGCCAATAT--GAGGAGc--gtcgttcttcttcttcttct-cccatACTACTCTTAGGC--TACT---CGTCTCTTCCCGATGACCGTTCGGGAAGCAACGAATTGAG------AAGGCAC-TCCGAAAAAACAGTG-AGGACAAAACAGAGACGCAGTAA--ACTGGACAGTCAATAGAAAGTAAACAGTAGTTAGTGAGAAAAGCGGCAAGAAGC---GGATGGTAGagggagaaagaaaaggttaTCGA--GTGTTGACTTACTGGACTCACCTTACCCGA---GAAACTTGGAAGATTGGAATGGAATCGAGAAGAGGATGGGTTGGTATAAG-----AGAAATGagcttgttttt
i caeSp111.Scaffold409  I 15 I 6
s caePb3.Scfld02_0       3064776 377 +  4147112 GCTTCAACCAAT-----TAGGATGACACCGGCTCACATAAAAGGCAACATCCTTAAGAGGAAAAGCCAATATA-GGGGAGC--GTAG---CCGTTTCCCATCT-CCCATACTACTTTTAG------CC---CTACTCTTCCCGATGACCGTTCGGGAAGTGATGGGTTAAG------AAGACCCGTCCGAAAAAACAGTA-GAGATCAAATGGAGACGCAGTTA--ACTGGACAGTCAATAGAAAGTAAACAGTAGTTAGTGAGAAGAGCGGCAAGAAGC---GGATAGCCGA--GAGAATGAAAAGGTTATGGAGTGTGTTGACTTACTGGACTCACCTTA-CTGG---GAAtctcggaaaatttgaatgggTTAGAAGAAGGGA-------GCATCAAGTTTTAGTAATGAGTCTGTTATC
i caePb3.Scfld02_0      I 18 I 36
s caeJap4.Scaffold17934   194481 347 +   591668 TCCCTATCCAATCAAAATGAAATGACACCGGCTCACATGAAAGGCAACATCCGTAAGAGGGAAAGCCAATAC--AAGGAGC--GTCT----------TCCCCTACCAACACTTCTCTTA-----TATC-------TCTTCCCGATGACCGTTCGGGAAGTGATGGGCTaag------aatac-------aaaaaatagcg-AGAAAAGTGGAGAGACGCCGAAA--ACTGAACAGCCAGTAGAAAGTAAACAGTAGTTAGTGAGAAAAGCGGCAAGGAGC---GGA--------GGATAGGGTGGCGGTTACGGA--GTGTTGACTTACT-----TACCTTG-CAGGACAGAATATCGAAAGACCGGAAAGGATTTGCAGACGGGAACATT---------------AAAGAGAAAGTTCTACC
i caeJap4.Scaffold17934 C 0 C 0

a score=-2880.000000
s ce10.chrX              4810428 20 + 17718866 CATCAACAGATTTACATGCT
s cb4.chrX              10143326 20 + 21540570 AAGGGATACATTACTCTACT
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1705838 20 -  4500979 AGttgttattttcatttatt
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold409     39797  1 -   201088 -------------------t
i caeSp111.Scaffold409  I 6 C 0
s caeJap4.Scaffold17934   194828 20 +   591668 TTTCTCCGGCTTATTTTGCT
i caeJap4.Scaffold17934 C 0 I 144
e caePb3.Scfld02_0       3065153 36 +  4147112 I

a score=-5780.000000
s ce10.chrX              4810448  4 + 17718866 AAAA---------------------------
s cb4.chrX              10143346 15 + 21540570 AGA----------CTGACAGA--ATGC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1705858 25 -  4500979 cgaGAATTTATCTCGGATAGA--TAGC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     39798 31 -   201088 ctaaGGTAGATCTCGGATAGACGTAGTACTA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3065153 36 +  4147112 I
e caeJap4.Scaffold17934   194848 144 +   591668 I

a score=-20426.000000
s ce10.chrX              4810452  99 + 17718866 -TTAATTTGT----------ACCC---------TTGGGAACA-------TGCGTA--ATAATGTACTGAAAGTATCTT--------TCACTCTT------CCGTCAC-----------------------------CTATA-----G----------AACAAGAGA---------------------ATGCTTTC-----------------------------------------AAGAAAACGGGT
s cb4.chrX              10143361 226 + 21540570 TTTGTTTTTACACTTCTGTGCTCCATAACAATCTCGGATAGAGATAGTATTGATAGTAAAGACAACTAGCCCCTTTCTCTCGGGATTTACTCTCTTTTTTCCGCTATTATCGT-------GTACTTAGCGCCAAGTTTGTT-----CTCATTAACGTCAGAAGAAAGGAGaagaatcattttttctgaacctTCGCCGTCTGCTAACAAGATTCACCTTATTAGA------AAATAACGAAAGC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1705883 132 -  4500979 ATTATTTGGA-----GTGGACCCC-------CCTCGGGTATACACTAT-TCCATATTATACTGTACTTAACCCAACCT------AATTACATTC------ACGtcagtatttt-------ttgagttgcCCTA---TTATT-----C----------CACAAGAGA---------------------AAGCTTCG-----------------------------------------AAGAAAGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     39829 142 -   201088 --CAATATGA----------CCCC---------CAGGGAAAACGATAT-TCCATAGAATCGTGTACTTGGAACAACTT------AATTATATTC------ACGTCAGtattttctccttctccctct-ctcta---TTATTCctccc----------caaaaaaag---------------------aagattca---------------------------aaa------gaaaagagacagC----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3065189 139 +  4147112 -CTATTATGA----------CCCC--------TTTGGGAGAACATTAT-TCCATATTATCGTGTACTTAAAGCAACCT------AATTACATGC------ACGTCAGAATATT-------TCGGTCTACACTA---TTATT-----C----------CATAAGGGA---------------------AAGTCtta---------------------------gaagaaagtgaaaaaagaatga----
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17934   194848 144 +   591668 I

a score=329510.000000
s ce10.chrX              4810551 676 + 17718866  
s cb4.chrX              10143587 675 + 21540570  
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   1706015 650 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold409     39971 618 -   201088  
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3065328 639 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   194992 590 +   591668  
i caeJap4.Scaffold17934 I 144 C 0

a score=-9424.000000
s ce10.chrX              4811227 31 + 17718866 ---------------------------AGGGGGT---------------AATGTTGCTAAATGTGAAACGCAA-----------
s caeRem4.Crem_Contig0   1706673 30 -  4500979 ---------------------------AAAAGTG---------------AATGTTGCATAA-GTGAAGAAAAA-----------
i caeRem4.Crem_Contig0  I 8 I 13
s caeSp111.Scaffold409     40592 30 -   201088 ---------------------------ACATTTG---------------AAcgttgagaaa-aaaaatggaaa-----------
i caeSp111.Scaffold409  I 3 I 12
s caePb3.Scfld02_0       3065970 36 +  4147112 ---------------------------GAGTTTGTGA---------ATAAATGAATGCCAA-AGGAAAGGAAA-----------
i caePb3.Scfld02_0      I 3 I 14
s caeJap4.Scaffold17934   195582 83 +   591668 aatttaaataataaaaaaggcaactacaaatttaaaatGGTATCAGACTAGTGTTGCGAAA-ATGAAATTAGATGGCATTGAAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10144262 28 + 21540570 I

a score=335350.000000
s ce10.chrX              4811258 591 + 17718866  
s cb4.chrX              10144290 583 + 21540570  
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   1706716 592 -  4500979  
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold409     40634 598 -   201088  
i caeSp111.Scaffold409  I 12 C 0
s caePb3.Scfld02_0       3066020 606 +  4147112  
i caePb3.Scfld02_0      I 14 I 18
s caeJap4.Scaffold17934   195665 538 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-4127.000000
s ce10.chrX              4811849 18 + 17718866 ATTTACAA----CGGCTCGCCA-------
s cb4.chrX              10144873 19 + 21540570 ATTTCGAGCCCCGGA---GCAA-------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1707308 15 -  4500979 ATTTACAA----AGA---GCCA-------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     41232 15 -   201088 TTTTTCGC----CAA---GCTC-------
i caeSp111.Scaffold409  C 0 I 2
s caeJap4.Scaffold17934   196203 14 +   591668 ------------AGA---GCTAAGCCGCA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3066626 18 +  4147112 I

a score=182502.000000
s ce10.chrX              4811867 385 + 17718866 AATTACTGG-TTACGCGCCTGG---ATACGAATTTGGGG--AGTAGGCAGTA---------------ATTTATGGA--TAGCCAGCTTCTTTAGCAACCACTG-CGAGTTGGACTTG-----------------TTATGAGTGTGTTTGATTTAGCGAGAGCCTGGTCCACGGTTTTGAG---AGCAGCTAGGTGACCTC--GCCTAGTTGTTTGTCG--TCTCGCGGCGGCGGAGGC-GAAGAAGGACCGAGATACGGTTTCCGGGTTTGGCCAAACATCTCAACCCGATGCCTC-CCCGTGTACTCCATAA---GCTGCTTCTCCGGATTTGACTTGCACTCA--TAGCGACGAGCTACTGTGTGCTTACTATATTTGTAAGAGAAGTGGTAAAGTGTGTAT-TCGCTGGGCAG-TAGGTATCTTACGGACCTTTACGAG----
s cb4.chrX              10144895 372 + 21540570 AATTATGGGCTTACGCCTCTGG---ATACGAGTGAGACGAGAGGGAGAAGAAGCCAAAACAAAATGGAGTTATGGA--TGAATGCCTATTTTCCCA-----TT-GAGATAGTGGTTG-----------------CTGTGGAAGTGTTTGACTTACT--GAGCCTGGTCCACGGTTTTGAGAGCAGCAGCTA-GTGACCCCTTCCCTACTTGTTTGTCG--ATCGGCGGC--------C-GAAGGAGGGCCGAGATACGGTTTCCGGGTTTGGCCAAACAACTCGAATGG------C-CT---CTACTCCATAAGCTGCTGCTTCTCCGGATTTGACTTACACTCATCGAGCTGCGGACTACTGTGTGCTTACCATATTGGC------------AAGGTGTGcac-aggaagaagaa-gaagaagaggaaaaa----tgtGAA----
i cb4.chrX              I 3 I 79
s caeRem4.Crem_Contig0   1707325 352 -  4500979 AATTGTAGG-TTACATGCCTGG---ATacggaaaaaaacggagaaagcAGTA---------------ATTTATGGA--TggctttttttcttctcaactgCTC-GGAATAGCAGTAG-----------------TTATGAGTGTGTTTGACTTACT--GAGCCTGGTCCACAGTTTTGAG---AGCAGCTA-GTGACCTCGG-CTTAGTTGTTTGTCA--TCTTGCGG---------C-GGCGAAGGACCGAGATACGGTTTCCGGGTTTGGCCAAACATCTCAACTCGATGCCTC-CC---GTACTCCATAA---GCTGCTTCTCCGGATTTGACTTACACTCACAGA-CGACGAGCTACTGTGTGCTTACCATATTGGCAGGAGGAGAGGTAAGGTGTGCAC-AGGAAGAAA-----------------------GTGAA----
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold409     41249 367 -   201088 AATTGCTAG-TTATGTGCCTGG---ATACGGAGACAACT-----GAGCAGTT--------------GTCTTGTGGA--Tagagaacatttt---caacAAGTGAGGAATAGAAGAAG-----------------TAATGAGTATGTTTGACTTACT--GAGCCTGGTCCACGGTTTTGAG---AGCAGCTA-GTGACCTCGGGGCTAGTTGTTTGTCATCTCTTGCGG---------C-GGAGAAGGGCCGAGATACGGTTTCCGGGTTTGGCCAAACATCTCAACTCGATGCCCCTCC---GTACTCCATAA---GCTGCTTCTCCGGATTTGACTTACACTCA--GAAAGACGAGCTACTGTCTATTTACCATATTGGCAGCCGAAGAGTTATAGTGTGCTT-AGGAAGACGGG-GAAATTGTTGTTGGA----TATATC----
i caeSp111.Scaffold409  I 2 I 2
s caePb3.Scfld02_0       3066644 363 +  4147112 aattgcTAG-TTAGAGCTCTGGAATATAGGGAATTGACT----AAAACAGCA--------------ATTTTATGGA--TGAACAATATTTTTC-CGACAACTG-GGAATAGAAGTAG-----------------TTATGAGTATGTTTGACTTACT--GAGCCTGGTCCACAGTTTTGAG---AGCAGCTA-GTGACCTC--GGCTAGTTGTTTGTCATCTCTCGCGG---------CGGGAGAAGGACCGAGATACGGTTTCCGGGTTTGGCCAAACATCTCAACACGATGCCTC-CC---GTACTCCATAA---GCTGCTTCTCCGGATTTGACTTACACTCA--GA--------CTACTGTGTGCTTACCATATTGGCATGAGAAGAGGTAAGGTGTGCTTAAGGAAGGAAAG-TGAAGAGGCTATGGA----TGTATC----
i caePb3.Scfld02_0      I 18 I 2
s caeJap4.Scaffold17934   196217 359 +   591668 AATTGGCGG-TTACGTGCCTGG---ATACGAGTAT--CT-----AGCCACTA---------------ATTTGTGGATCTGGACAGCTA------CAACAAGTT-AGAAGAAGAGTGAGTGAGTAGAGTTtttatgtgtgtgtgtgtttaaCTTATT--GAGCCTGGCCCACA-TTTTGAG---AGCATCGA-GTGACCTC--AGCTAGTTGTTTGT----CCTAGCGG---------C-GGAGAAGG-----GGTACGGTTTCCTGGTTTGACCAAACAACTCACCTCTTTACCTA-CT---G--CTTCTTAA---GCTGCTTCTCCGGATTTGACTTACACTCA--CA-----GAGCTACTGTGTGCTCACTCTGTTGGC---AGAAGAGGTACGAAGTACGc---gatgaaaaatgaaatatgCTGTGAA----TATATGTTGG
i caeJap4.Scaffold17934 C 0 I 3

a score=-12873.000000
s ce10.chrX              4812252 30 + 17718866 GAGCAA--TAAGAAA-------------AAAAAGTTGATGAACAT
s caeRem4.Crem_Contig0   1707678 34 -  4500979 AGGCCA--TCGGATATATCGGTT-----ACGGTTTGAATGT----
i caeRem4.Crem_Contig0  I 1 I 10
s caeSp111.Scaffold409     41618 27 -   201088 ------------ATACGGTGGG------GCAGATTTATTGATGAT
i caeSp111.Scaffold409  I 2 I 3
s caePb3.Scfld02_0       3067009 32 +  4147112 ------------ATATGTTTCGTCTCCAACAGCATCAATTAT-AT
i caePb3.Scfld02_0      I 2 I 3
s caeJap4.Scaffold17934   196579 28 +   591668 -ggttaatttggaaa-------------atatttttgattac---
i caeJap4.Scaffold17934 I 3 C 0
e cb4.chrX              10145267 79 + 21540570 I

a score=33672.000000
s ce10.chrX              4812282 119 + 17718866 TAAAAAAAACAGGAGGAAC-----TA-ATATGGATTAAT-TATCGCATCCAGACATGGTGTGTAAG-----ATACGAAACATCAAAACATATATACT-----ATTACACAA-AATTTGCATC----------AT-AAACACGAAAAA-G
s cb4.chrX              10145346 127 + 21540570 ---TGTAaggatgagaaaa-----aatttatggATCGAT-TATCTCATCCAGACATGTTGTGTAAAAT---AGAGGAAACACCAAAAC--ATAGGAT-----ATTACACAA-TCGATTCATCATAGATGTATATGAAACACGAATCA--
i cb4.chrX              I 79 C 0
s caeRem4.Crem_Contig0   1707722 120 -  4500979 GATTGAACGTATAATAAAA-----TA-TTATGGATTGAT-TATCTCATCCAGACATGTTCTGTGTAAG---ATatgaaacatcaaaac--atATACT-----ATTACACAA-ATGATGTATC----------ATGAAACACGAATTAC-
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold409     41648 124 -   201088 GACACAAAAAAGTAGGAA------TA-ATATGGATTGATATATGTTATCCATACAGAGTGTATTATATTCGATGTGAAACATCAAAAC--ATAGACT-----ATTACACAGACAAATGTATC----------ATAAAACACGAATAA-G
i caeSp111.Scaffold409  I 3 I 45
s caePb3.Scfld02_0       3067044 123 +  4147112 GATCCAATagaagaccaaaaaaatta-ttatggaTTGAT-TATCTAATCCAGACATAGCGTGTTAC-----Atatgaaacatcaaaac--atAGACT-----ATTACACAG-CCAATTTGTC----------AGCGAACACGAATCT-G
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   196607 104 +   591668 ---taaaaaaaagatgaat-----gA---------TGAT-T------TCCAGAAGAGGTATAGA-------GATTGCAACATCAAAAC--ATAAATTGACACATTACACAT-AAAACGCATC----------ATAAACCGCGGAAAC-G
i caeJap4.Scaffold17934 C 0 C 0

a score=1537.000000
s ce10.chrX              4812401 20 + 17718866 A-GAT--TTGATGG-ATTGGGTGG
s cb4.chrX              10145473 14 + 21540570 ---------GATAG-CTACGGTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1707842 19 -  4500979 --AAT--TTCATAG-TTTTGGTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3067167 21 +  4147112 ACAGT--TTCATAG-CTACAGTAG
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17934   196711 24 +   591668 GCAACTATTCATAGCCTACGGTAG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     41772 45 -   201088 I

a score=-3674.000000
s ce10.chrX              4812421  3 + 17718866 AT-------A
s cb4.chrX              10145487  2 + 21540570 TT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1707861 10 -  4500979 TTTCAGTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   196735  3 +   591668 --TTA-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3067188 38 +  4147112 I
e caeSp111.Scaffold409     41772 45 -   201088 I

a score=-7138.000000
s ce10.chrX              4812424 26 + 17718866 ------GGGTAAAAATGTTATAAAATGAAAAT
s cb4.chrX              10145489 22 + 21540570 ---------CTAGATTTGTattaaaa-aacaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1707871 24 -  4500979 -------CACTAAAACTGTATGATTA-ATCAT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     41817 26 -   201088 ------GACTTCAGTTTTTGTCAAAAGAACAG
i caeSp111.Scaffold409  I 45 I 1
s caeJap4.Scaffold17934   196738 21 +   591668 TGATAAGAATCAGATCATCAT-----------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3067188 38 +  4147112 I

a score=-10658.000000
s ce10.chrX              4812450 22 + 17718866 TTTCAATGATCAAAATCT-----------GAAA
s cb4.chrX              10145512  3 + 21540570 ------------gaa------------------
i cb4.chrX              I 1 I 4
s caeRem4.Crem_Contig0   1707897 13 -  4500979 ---------TCTGGATCT-----------AAAA
i caeRem4.Crem_Contig0  I 2 I 29
s caeSp111.Scaffold409     41844 22 -   201088 TCACAATGATCacgattc-----------aaaa
i caeSp111.Scaffold409  I 1 I 29
s caePb3.Scfld02_0       3067226 33 +  4147112 tttcagttttcgaaattaattaagaaaagaaga
i caePb3.Scfld02_0      I 38 I 22
s caeJap4.Scaffold17934   196759 17 +   591668 TATCATTGGCTAGGCAG----------------
i caeJap4.Scaffold17934 C 0 C 0

a score=-7829.000000
s ce10.chrX              4812472 34 + 17718866 CCAGCACAAAAATAAG--ATTCAGGAACC----------TGAGAAA
s cb4.chrX              10145519 23 + 21540570 CAA--AGTAGTAAAAA-------GGAA--------------GGAAA
i cb4.chrX              I 4 I 3
s caeSp111.Scaffold409     41895 32 -   201088 caattattcgaaaaaaataggcgggaa--------------aaaag
i caeSp111.Scaffold409  I 29 C 0
s caePb3.Scfld02_0       3067281 30 +  4147112 TCATTACTGGAAAAGA--AGGCAGGAA--------------CGAAG
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17934   196776 30 +   591668 ----------------TCACCTAGTAATCTTGAGCTCCATACTAAG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1707910 29 -  4500979 I

a score=69434.000000
s ce10.chrX              4812506 230 + 17718866 AAAGAACAGGATCT-CA-------------AGGAAGGCAAAGTAATG-CCAGGTGGATTATAGCACAATTATGTT----GATG----ATTGCA--TGGCTGTGTGTCTATACTGGATTACTGTCAATTGCGCGTAACCACCACTACA-AGTTCGAGACTAGCAGGAAG--GTGGTCTAGATGGACAGATGGTGCTAACAGGTAATTGAGATGG---GTGAAGTGAC-TGGAGAGCAAACTCGCATCTAGTATGACGTTACGT-----
s cb4.chrX              10145545 216 + 21540570 AAAAACTGGGCCTT-CAGCTCTTCCTACATAGAAAGAAAAAC----ACGTATGTGCGATCTACCAC--TCATGGGC--TAATAGTGAATTGCG--T--ATCTAA---------GGATTAATGTCAATTATACGCA---ACCAGTTTA-AGTTCGAGAA------TAAG--------AATATGGGCATATGGTGCAAACAGGTAATTGAGAGGAGGGCTGAAGAGTTGTGTGAGGCAAGC------ATGTTGTATTGTTGCGT-----
i cb4.chrX              I 3 I 52
s caeRem4.Crem_Contig0   1707939 221 -  4500979 AAAAAACGAGATCT-CA-------------AGAATGAGAAGT----G-GTAGGGGGATTATAGCACAATTATGTTC---AATGAAGGATTGCA--TGGACATAAGAACA--CTGGATTACTGTCAATTGCGCGTA---ACCAGTATA-AGTTCGAGAAACGCAGGAAGAGATGGCTAATATGGACAGATGGTGCTAACAGGTAATTGAGATGA---CTGAAGAGT--TGCGAGACAAAC------ATGTCCTCGTGTTGCAT-----
i caeRem4.Crem_Contig0  I 29 I 10
s caeSp111.Scaffold409     41927 214 -   201088 aaaaaacaagatct-CA-------------AGAAGACGAAAG----G-CAGCCTGGATTACATCTCAATTACGCTC---GATGAAGTATTGCG--TGGCCAGTAAATCAC-CGGGATTACTGTCAATTATCCATA---ACTAGTATA-AGTTCGAGAACAGTGAAATG--------AGGA-GACCATATGGTGCTAACAGGTAATTGAGAGGG---ATGAAGAGT--TGTGAGGCAAAC-----AAAGATGTATTATTACGT-----
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3067311 216 +  4147112 GAAAAACAAGATCT-CA-------------AAACCAGAATGA----G-TAGGTTGGATTATAGCACAATTATCTTC---ATTGAAGTATTGCGTATGTCTAAGAGAATA--GGGGATTACTGTCAATTATGCCTA---ACCAGAACAGAACTCGAGATTCGCAGGAAG--------AGGA-GACCATATGGTGCTAACAGGTAATTGAGAGGG---ATATTGAGT--TGCGAGGCAAAT-----AACGATGTCTTATTCTAT-----
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold17934   196806 225 +   591668 AAAAAACAAGACTTGCA-------------AGAAAAACA-------A-CCAACTGGATTATAGCTCAATTATGCCCATAAGAAGAGGGTTGAG--AGAATGCATGAACATACTGGATTACTGTCAATTGCGCATA---ACCAGTAGA-AGTTCGAGAGTTGTGCAGAT-----GATCATATGGACAGATGGTGCTAGTAGGTAATTGAGATGG---GTGTGGAGT--TGCGCGGCAAAC-----ACACTTCTAATGTTGCGTGATGT
i caeJap4.Scaffold17934 C 0 I 4

a score=-8799.000000
s ce10.chrX              4812736 41 + 17718866 TTGCGGAGGAGAA--------------CGGTAAGATTGCGA---TACATAAATCTAGG
s caeRem4.Crem_Contig0   1708170 27 -  4500979 ttattgaaaaaaaac-----------tgagaggAAT--------------------GG
i caeRem4.Crem_Contig0  I 10 I 3
s caeSp111.Scaffold409     42147 24 -   201088 CTctaggagaaaa--------------gaagaatat--------------------ga
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3067545 17 +  4147112 CTATGTGAAAAAA--------------GA---------------------------GG
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17934   197035 58 +   591668 TTATGAAGAAGAATCTGTCGCGAGGGtcaggaaaacaaaaaatgaaagtcaAACTAGA
i caeJap4.Scaffold17934 I 4 C 0
e cb4.chrX              10145761 52 + 21540570 I

a score=-6882.000000
s ce10.chrX              4812777 34 + 17718866 TTCTATGTTTTA-GGTTCTAGGATAGGAAGAGAAA
s cb4.chrX              10145813  8 + 21540570 ------------------TTCGTCGA---------
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   1708200 18 -  4500979 -----------------TTCTGTCAGGAAGAGGGT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold409     42171 20 -   201088 ---------------atCTTTGTCAGGAAAAGGTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3067562 20 +  4147112 ---------------GTCTTTGTCAGGAAGAGGGt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   197093 34 +   591668 -CTCATGATATATTTATTTAAGCTAAAAAAGGTAA
i caeJap4.Scaffold17934 C 0 I 55

a score=-6238.000000
s ce10.chrX              4812811  76 + 17718866 TTTG--GGGTGTGAGGAATGGTG-------------------GGGAGCAA--------ATATGGAGTGAAGGAATCTCTGGGGGTGGGGCACCGCAGGCA-----------------TTGG-A-
s cb4.chrX              10145821 110 + 21540570 ------TGGGGGTTGGACCAGAG---GAGGAGCAGACTGTCTGGGGGTGggatgatgaaaaaaaagggaaggaCGAGTAGAGGAGAGGATTTTGGAAAA-----GTGAAAGAAGAAGCAggaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1708218 106 -  4500979 TTTT--TGGGGGTTGGGCCAAGG---GAGGA-----------GGGAGCAGAAGCTTTTAGACAGACCCagtgaagaggag-gaggagaatggtgaaaaaaggaggagaaagGAGAatcagg-at
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     42191 101 -   201088 TTCGAAGGAGGGTTggactgaagaaaaaggt-----------ggGAGCAGTGAAAAGTAGACAGATCATGGAAAGG-----GGGAGGAGtcatggaaaaa----agtgaaagaga--ctgg-at
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3067582  95 +  4147112 ttttttGGGGGGTTGGGCTTAAG---AAGGT-----------GGGAGCAATCGAAAGTAGACAG----TGGAA--------GTGGGCGGTTATGGAAGAAGCAGACAGAAAGAga--ctgg-at
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   197127  55 +   591668 I

a score=663841.000000
s ce10.chrX              4812887  930 + 17718866  
s cb4.chrX              10145931 1012 + 21540570  
i cb4.chrX              C 0 I 339
s caeRem4.Crem_Contig0   1708324  905 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409     42292  944 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3067677  879 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   197182  845 +   591668  
i caeJap4.Scaffold17934 I 55 C 0

a score=816.000000
s ce10.chrX              4813817 10 + 17718866 GATCAAGTCA
s caeRem4.Crem_Contig0   1709233 10 -  4500979 AAGCAAATCA
i caeRem4.Crem_Contig0  I 4 I 1234
s caeSp111.Scaffold409     43236  9 -   201088 -ATCGAATCA
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3068556  9 +  4147112 -ATCTTGGTG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   198027 10 +   591668 CAGGAAGCCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10146943 339 + 21540570 I

a score=-6419.000000
s ce10.chrX              4813827  54 + 17718866 AACATCTACAGTGTCACGAAGATTTTAGTTCCGAAA----------------TTGATTTTAATT-----------------------------------------------T----TCATG
s caeSp111.Scaffold409     43246 113 -   201088 TTCATCGGCAA----AGAGAGAAGGCAGTTTCATAACTTTCCAGAAAATCACTTGACTTCAATTAATTGCCTTGACAAGATAGTTaccaaaaatgaagaaaaccgGTACAGT----TGATA
i caeSp111.Scaffold409  I 1 I 112
s caePb3.Scfld02_0       3068566 115 +  4147112 ACCATGAACAG--TcacaaaaatcacagtttcataaccttccagaaaatCACTTGACTTCGGTTAATTGCCTTGACA----AGTTACCAAAATTGGCAAGAACCGGTACGGTTTGATGATA
i caePb3.Scfld02_0      I 1 I 209
s caeJap4.Scaffold17934   198037  27 +   591668 -----------------------------------------------ACCAGCTGACATCAGTTGATTTTCATG-----------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10146943 339 + 21540570 I
e caeRem4.Crem_Contig0   1709243 1234 -  4500979 I

a score=0.000000
s ce10.chrX              4813881 44 + 17718866 TTTTCAATTTGTTTTGATCTTTAATGAGTTATGAGAGCACCAAA
e caePb3.Scfld02_0       3068681 209 +  4147112 I
e caeJap4.Scaffold17934   198064  0 +   591668 C
e cb4.chrX              10146943 339 + 21540570 I
e caeSp111.Scaffold409     43359 112 -   201088 I
e caeRem4.Crem_Contig0   1709243 1234 -  4500979 I

a score=19563.000000
s ce10.chrX              4813925 133 + 17718866 TTCACAA-----------------------------------------------------------------AAAGTAC-------AATAATGTTTCAATA------ACCTTGGAAA---ACGACGTGAAA----------------------TTTTT------TAGGATGATAACCAAAAAAACAGGAATTGAAAAAT-TGACACTTTAGGTACCGACATACGTCC-TCTCATCAAGAACCTT
s cb4.chrX              10147282 179 + 21540570 TGCACAG-------------------------------------------------------------TTGTGTAGCAC--AGGAAGATGATGTTTCGATAACTTTGACCTTGGACTTGAAACAGGAGAAAATAGAATagactttctttttttttacctATCCTTCGGAAGATAACC-AAAAAACAGGAATTGGAATTTCGGCCACTTTAGGAAGCGAGTTTCCTCA-CTTTATCAAGGTTCTT
i cb4.chrX              I 339 I 541
s caeRem4.Crem_Contig0   1710477 157 -  4500979 TTCACA--------------------------------------------------------------------AACAC--TGGAAGATGATGTCTCGATAACTTCGACCTTGGACT---AAGATGTGAAA----AATACactttgtcgtttttttcc------tTGGATGATAACC-AGAAAACAggaattggaatttttgcCACTTTAGGAAGCGACAGTCCT---CCTCATCAAGGTTCCT
i caeRem4.Crem_Contig0  I 1234 I 26
s caeSp111.Scaffold409     43471 228 -   201088 gagaaaacagtttcaatgaaccagaaaaagaaaacggttCCTTATGCTATCTGAACTTTGGGAAAGTATTGGGAAACACAATGGAAGAAGATAACTCGATAACTTTAACCTTGGACT---GAGATGTGAAA----AATACACtttcgt-cgtttttct------tcggaTGATAACC-AGAAAACaggaattcgaattt-tgcCACTTTAGGAAGCGTCTGTCCTCTTTCTCATCAAGGTTTTT
i caeSp111.Scaffold409  I 112 I 23
s caePb3.Scfld02_0       3068890 158 +  4147112 TCCACAA---------------------------------------------------------------GGAAAAAAGCACGGAAGATGATGACTAGATAACTTTGACCTTGGACT---AAGATGTGAAA----AATACAC---------TTTTCTT------TCGGATGATAACC-AGAAAACAGGAATTGGAATTTCTGCCAATTTAGGAAGCGACTGTCTCCCTCCTCATCAAGGTTCTC
i caePb3.Scfld02_0      I 209 I 17
s caeJap4.Scaffold17934   198064  77 +   591668 ------------------------------------------------------------------------------------ATAAGAATGttac-----------------------aaaattagaaa----a-------------cctGTTTTT-----------TGATATTC--------ATGAATTG----CTTTTCAATTCTAA-----------------ACCTATGTCGgat---
i caeJap4.Scaffold17934 C 0 C 0

a score=-140724.000000
s ce10.chrX              4814058 366 + 17718866  
s caeRem4.Crem_Contig0   1710660 492 -  4500979  
i caeRem4.Crem_Contig0  I 26 I 1
s caeSp111.Scaffold409     43722 615 -   201088  
i caeSp111.Scaffold409  I 23 I 4
s caePb3.Scfld02_0       3069065 675 +  4147112  
i caePb3.Scfld02_0      I 17 I 4
s caeJap4.Scaffold17934   198141 370 +   591668  
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10147461 541 + 21540570 I

a score=41207.000000
s ce10.chrX              4814424 145 + 17718866 ATAACGGTCGAATGAGCAAGT--TGG-CAACGAGCTCATTAGC-----------GACCGGAAAAGCAAAGGTATCA--GTTTCGACGAATCTTCTATGCTATGGA--GCTATTATGATGACTT-GCCAT---CCATAGTGGG-------TGGAGCGACATGAAAA--AAGAAACTA
s cb4.chrX              10148002 153 + 21540570 ATAACGGTCGAATGAGCATCA--TGGaaaaaaaGCTCATTAGCGACTGGGAAAAAACAGGAGGAG-----GTATCTCGAATTCGACGAATCTTTT---TCAAGGTGGGCAATGAGTT-------GTCGTCGACCACAGTAGGCGGTGGTGGGGGAAG-AGCAGAG--AAAGTA---
i cb4.chrX              I 541 I 53
s caeRem4.Crem_Contig0   1711153 130 -  4500979 ACTATGGTCGAGTGAACCCTA--AGG--TATGAGCTCATTAGC-----------AACAGGAAAAG-----GTATCC--GATTCGACGAATCTTCCACGCCAACTT--ACTATGAGTT-------GTCAT---CCACAGAGGG-------AGGAGAAGCAGGAGAA--AAGCTA---
i caeRem4.Crem_Contig0  I 1 I 3
s caeSp111.Scaffold409     44341 135 -   201088 ataaCGGTCGGGTGAGCATAT--TGG-AAATGAGCTCATTAGG-----------CACTGGAAAAAC----GTATCT--AATTCAACGAATCGTCC---ACGCGGT--GCCATTATTACG-----GGCAT---CCACAGTGGG-------CGGAGAC-CAGGTGAGCAGAGATGTCT
i caeSp111.Scaffold409  I 4 I 12
s caePb3.Scfld02_0       3069744 141 +  4147112 CTAACGGTCGAATGAACACATCATGG-AAACGAGCTCATTAGC-----------GACTGGAAAAAT----GTATCC--AATTCGTCGAATCCTCT---ATACGGA--GCTATTATTTTGGCTTTGCTAT---CCATAGTGGG-------CGGAGAAGAAGGTAAG--AAGATGCTG
i caePb3.Scfld02_0      I 4 I 12
s caeJap4.Scaffold17934   198511 132 +   591668 ATAACGGTCGAATGAACATAA--TGG-AAATGAGCTCATTAGG-----------GGCAGGAAAAG-----GAATTC--GATTCGACGAATCCTCT---ATACGGA--GCCAGTAAGATGA----CTAGT---CCAATGTAGG-------CGGAGATGTggaaaaa--tacgttt--
i caeJap4.Scaffold17934 C 0 C 0

a score=-9978.000000
s ce10.chrX              4814569 36 + 17718866 CTTCAAGG------TATGATAAGT------------------TGACGAAAGC-------CTTGTGAT
s caeRem4.Crem_Contig0   1711286 43 -  4500979 ----AAGGCatgaagaggaaaaaa------------------taagaggaTA--CATCTCTAGTGGC
i caeRem4.Crem_Contig0  I 3 I 27
s caeSp111.Scaffold409     44488 29 -   201088 --------------tgaaaaaaga------------------gaagaagcta------TATAGTTAC
i caeSp111.Scaffold409  I 12 I 28
s caePb3.Scfld02_0       3069897 24 +  4147112 --------------cacaaaaaat------------------gaacaa-----------ataatGAC
i caePb3.Scfld02_0      I 12 I 29
s caeJap4.Scaffold17934   198643 59 +   591668 --------tcttaacagaaaaaaaacgctgaTATGTTATATGAAACAGGAGGAGCAAGGCTAATAAC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10148155 53 + 21540570 I

a score=24749.000000
s ce10.chrX              4814605 34 + 17718866 --------AAATTCTTTGAAGCTACCGAAAGTGAATCATGGA
s cb4.chrX              10148208 34 + 21540570 --------AAATTCTTTGAAGATACCGAACGTGAATCACGGA
i cb4.chrX              I 53 I 34
s caeRem4.Crem_Contig0   1711356 29 -  4500979 --------catttctttgAAGGTACCGAATGTGAATC-----
i caeRem4.Crem_Contig0  I 27 I 28
s caeSp111.Scaffold409     44545 34 -   201088 --------tttttctttgaagataCCGTGCGTGAATCACGAA
i caeSp111.Scaffold409  I 28 I 22
s caePb3.Scfld02_0       3069950 34 +  4147112 --------AGCTTCTTTGATGCTACCGAATATGAATCATAGA
i caePb3.Scfld02_0      I 29 I 583
s caeJap4.Scaffold17934   198702 42 +   591668 CAAAATGACGATTCTTTGAAGGTGCCGAGTGTGAATCATTGA
i caeJap4.Scaffold17934 C 0 I 29

a score=1078.000000
s ce10.chrX              4814639 95 + 17718866 ---------CCGCGAGTGGTTTGTCAAAACTCGGGCGCGAACATCAAAGGCG--CCATCTGTTAAGAGGAACATCGAGATATTTGC---AAGTATTAAGCATATTTAT-A-
s cb4.chrX              10148276 80 + 21540570 ---------TTAAGAGGTGGCTACCGACAGAT-GGCGCCAACATCAAAGGCA--CCCTCGAAACATTG--------------GAAC---AAGGGTTAAGTAAATTCGTA--
i cb4.chrX              I 34 I 372
s caeRem4.Crem_Contig0   1711413 87 -  4500979 ---------TTAAGAGGAATTCTCCAGTCTTT-GGCGCTAACTTCAAAGGTG--TCTTCTCACAAGGGCGCCAAC----TATAAGC---AAGTGTTAAACAAA--CGT---
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold409     44601 83 -   201088 ---------TTTGGAACGTCTTTTCTGTCGGT-GGCGCCAACATCAAAGGCG--CCCTCGAAAGAGTG-------------TTAACTTAGAGTGTTAAgcaaattttc---
i caeSp111.Scaffold409  I 22 C 0
s caeJap4.Scaffold17934   198773 97 +   591668 CCGCCGCTTTTGGAGAGGAAAATTTAACCTGT-GGCGCCAACATCAAAAGAGTTCCGTCGAGGAACGTCAACA--------CTGAA---GAGTGTTAAGCAAATTTAC--G
i caeJap4.Scaffold17934 I 29 C 0
e caePb3.Scfld02_0       3069984 583 +  4147112 I

a score=3804.000000
s ce10.chrX              4814734 11 + 17718866 TAAGAAGGTCA
s caeRem4.Crem_Contig0   1711500 11 -  4500979 TAGTAAGGTCA
i caeRem4.Crem_Contig0  C 0 I 392
s caeSp111.Scaffold409     44684 11 -   201088 gaagaaggTCA
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   198870 10 +   591668 -GAAAAGGTCA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3069984 583 +  4147112 I
e cb4.chrX              10148356 372 + 21540570 I

a score=-632.000000
s ce10.chrX              4814745 6 + 17718866 -AGTAAG
s caeSp111.Scaffold409     44695 6 -   201088 -TGAAGG
i caeSp111.Scaffold409  C 0 I 473
s caeJap4.Scaffold17934   198880 6 +   591668 ACGAAG-
i caeJap4.Scaffold17934 C 0 I 468
e caePb3.Scfld02_0       3069984 583 +  4147112 I
e cb4.chrX              10148356 372 + 21540570 I
e caeRem4.Crem_Contig0   1711511 392 -  4500979 I

a score=0.000000
s ce10.chrX              4814751 842 + 17718866  
e caePb3.Scfld02_0       3069984 583 +  4147112 I
e caeJap4.Scaffold17934   198886 468 +   591668 I
e cb4.chrX              10148356 372 + 21540570 I
e caeSp111.Scaffold409     44701 473 -   201088 I
e caeRem4.Crem_Contig0   1711511 392 -  4500979 I

a score=997.000000
s ce10.chrX              4815593 25 + 17718866 GATGGCAGCTGTGGTGGCGGCACTG
s caeRem4.Crem_Contig0   1711903 17 -  4500979 GATGGCAGCTGT--------cactg
i caeRem4.Crem_Contig0  I 392 C 0
e caePb3.Scfld02_0       3069984 583 +  4147112 I
e caeJap4.Scaffold17934   198886 468 +   591668 I
e cb4.chrX              10148356 372 + 21540570 I
e caeSp111.Scaffold409     44701 473 -   201088 I

a score=-275.000000
s ce10.chrX              4815618 27 + 17718866 ---------TTTTTTTTTCAGAGACC-AGCT--ATAGCT------
s caeRem4.Crem_Contig0   1711920 45 -  4500979 tttttcacttccattttttgtccACTCAGACAGACAACTATaatt
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3070567 29 +  4147112 ---------tctttttttcatacagT-AGCTAGACAGCT------
i caePb3.Scfld02_0      I 583 C 0
e caeJap4.Scaffold17934   198886 468 +   591668 I
e cb4.chrX              10148356 372 + 21540570 I
e caeSp111.Scaffold409     44701 473 -   201088 I

a score=593.000000
s ce10.chrX              4815645 10 + 17718866 AGAATATTTT
s cb4.chrX              10148728 10 + 21540570 aaaGGATTTT
i cb4.chrX              I 372 C 0
s caeRem4.Crem_Contig0   1711972 10 -  4500979 agaagatttC
i caeRem4.Crem_Contig0  I 7 I 5
s caePb3.Scfld02_0       3070596  6 +  4147112 --ATAATT--
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17934   198886 468 +   591668 I
e caeSp111.Scaffold409     44701 473 -   201088 I

a score=-3386.000000
s ce10.chrX              4815655 70 + 17718866 TGACAGTAGTGAGGCAGAACTG---GGATATGAAT--GAAATATCGGGACGATG---TGAGCGATCCATTCTTTATTT
s cb4.chrX              10148738 67 + 21540570 ----TGAGGAGACAAAACACAATCTGGACTTGAATGAGG---ATCTATACGAAGTAAAGTGGGATTC-ACATCGA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1711987 64 -  4500979 ----CGAGGCGGCTATA-ACAATCTGGACTTGAAT--GG---ATATATACGACT---GGAGGAattc-tttctgattt
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold409     45174 71 -   201088 TGACAGCGACGGACTGGGACTGTCTGGACACGGAG--AA--TATGTGTACGACT---GGAGGgatccattttccattt
i caeSp111.Scaffold409  I 473 C 0
s caePb3.Scfld02_0       3070605 60 +  4147112 GAATTGTGAAGGAAATCGGCTATGTGGGAAGAGAA--GG-----ATATACGACT---GGAGGGATCC--------TTT
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17934   198886 468 +   591668 I

a score=279611.000000
s ce10.chrX              4815725 284 + 17718866 TCCACAG-AACATGATCGTGTACCGTAATCCGTAGGCGGTTATGGCTGGCCGAACAATCCGTGCCACAGGCTGGA-------GAGAGAGGGAGCGTACAAGT--------ATACTTGTGCAGTTTGCGGTGTATGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTGCGT---CCCAACCAC-CACTCGCTTTTGG----GAGACACTTAACAATCGG-TCC-GAATCCGAAATCCGACTGGAAACTGTTCGGCATATACCAGTTATAAATGAATCC----GAATCCGGCGGATTTTCGGTT---GAAAACGAA
s cb4.chrX              10148805 290 + 21540570 -----GG-AACATGATCGTGTACCGTAATCCGTAGACGGTTATGGCTGGCCGAACAATCCGTGCCACAGGCAGGACGACATGGAGAAGACCGCCGTACAAGTCTCAAACACTACTTGTGCAGTTTGCGGTA--TGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTGCGT--CTCCTTCCACTCGCTCACGTTTGGAAGAGAGACACTTAACAATCGG-TCC-GAATCCGAAATCCGACTGGAAACTGTTCGGC--ATACCAGTT--------ATCC----GAATCCGGCGGATTTTT-GATGGTGAAAACGAA
i cb4.chrX              C 0 I 2284
s caeRem4.Crem_Contig0   1712051 266 -  4500979 tccaCAG-AACATGATCGTGTACCGTAATCCGTAGGCGGTTATGGCTGGCCGAACAATCCGTGCCACAGGCCGGA-------GAGAG------CGTACAAGT--------ATACTTGTGCAGTTTGCGATG--TGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTGCGT--CCCAAACCAC-CACTCACTTTTGG----GAGACACTTAACAATCGGTTCC-GAATCCGAAATCCGACTGGAAACTGTTCGGC--ATACCAGTTATAACTGAATCC----GAATCCGCCGGATTTTT-GTT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     45245 277 -   201088 tccacaG-AACATGATCGTGTACCGTAATCCGTAGGCGGTTATGGCTGGCTGAACAATCCGTGCCACAGGCAGGA-------GAGAG------CGTACAAGT--------ATACTTGTGCAGTTTGCGGTG--TGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTGCGTC-CCACAACCAC-CACTCACTTTAGG---AGAGACACTTAACAATCGG-TTCGGAATCCGAAATCCGACTGGAAACTGTTCGGC--ATACCAGTTATAAATGAATCCGAATGAATCCGGCggattttt-gtt---gaaaa----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3070665 278 +  4147112 TCCACAGAAACATGATTGTGTACCGTAATCCGTAGGCGGTTATGGCTGGCCGAACAATCCGTGCCACAGGCAGGA-------GAGAG------CGTACAAGT--------ATACTTGTGCAGTTTGCGGTG--TGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTGCGTCTCCCCAACTAC-CACTCACTTTTGG----GAGACACTTAACAATCGG-TCC-GAATCCGAAATCCGACTGGAAACTGTTCGGC--ATACCAGTTATAAATGAATCCGAATGAATCCGGCGGATTTTTGGGT---GAAAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   199354 257 +   591668 TTCACAG-AACATGATTGTGTACCGTAATCCGTAGGCGGTTATGCGTGGCGGAACAATCCGTGCCACAGGCTGGA-------GAGAG------CGTACAAGT--------ATACTTGTGCAGTTTGCGGTG--TGAGCGAGGGATTTTGAGGATTATCCGTCCTGTAGTTCGT--CCCCT------CACACGCTTT-GG----GAGACACTTAACTATCCG-CCC-GAATCCGAAATCCAACTGGAAACTGTTCGGC--ATACCAGTTGTAAATGAATCC----GAATCCGGCGGATTTTC-G--------------
i caeJap4.Scaffold17934 I 468 C 0

a score=13274.000000
s ce10.chrX              4816009 45 + 17718866 CCGAAACGTCGC-GTCGGAGAACAT--TGTTTCAATAAAG---------------------CTGCCGTT
s caeRem4.Crem_Contig0   1712317 40 -  4500979 --AAAACGCCGC-ATTGAGAAACAT--TGTTTCCACCAAG------------------------CCCTT
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold409     45522 44 -   201088 -cgaaacatcgc-tttgagaaaaattatgtttcaaCCAAG---------------------C--CCGTT
i caeSp111.Scaffold409  C 0 I 567
s caePb3.Scfld02_0       3070943 42 +  4147112 -CGAAACGTCGCTTTTGAGAAACAT--TGTTTCAACCAAG------------------------CCGTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   199611 65 +   591668 -TGAAACGTCGC-ACAGAAAAATAT--TGTTTCAATGAAGGTTTGGATAAAAGGAAGGAAGCTAGTGTT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10149095 2284 + 21540570 I

a score=46.000000
s ce10.chrX              4816054 10 + 17718866 --CGGTGTTCCA---------
s caeRem4.Crem_Contig0   1712370 10 -  4500979 --TGATgttcca---------
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0       3070986 10 +  4147112 --GTGTTTTCCA---------
i caePb3.Scfld02_0      I 1 I 1650
s caeJap4.Scaffold17934   199676 21 +   591668 CAACGTGTTCCGTGGGTAAAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10149095 2284 + 21540570 I
e caeSp111.Scaffold409     45566 567 -   201088 I

a score=-224.000000
s ce10.chrX              4816064 7 + 17718866 ATGAAAA--
s caeRem4.Crem_Contig0   1712380 7 -  4500979 ttcaaaa--
i caeRem4.Crem_Contig0  C 0 I 1052
s caeJap4.Scaffold17934   199697 9 +   591668 ATAAAGAGA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e cb4.chrX              10149095 2284 + 21540570 I
e caeSp111.Scaffold409     45566 567 -   201088 I

a score=1187.000000
s ce10.chrX              4816071 33 + 17718866 GTTGAGGAAAAATTGAGACTGTCTGAATCAAAA
s caeJap4.Scaffold17934   199706 33 +   591668 GGGGAAGAGAGAGAAAGACTGTCTGGACAAGAA
i caeJap4.Scaffold17934 C 0 I 2948
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e cb4.chrX              10149095 2284 + 21540570 I
e caeSp111.Scaffold409     45566 567 -   201088 I
e caeRem4.Crem_Contig0   1712387 1052 -  4500979 I

a score=0.000000
s ce10.chrX              4816104 2220 + 17718866  
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e caeJap4.Scaffold17934   199739 2948 +   591668 I
e cb4.chrX              10149095 2284 + 21540570 I
e caeSp111.Scaffold409     45566  567 -   201088 I
e caeRem4.Crem_Contig0   1712387 1052 -  4500979 I

a score=444.000000
s ce10.chrX              4818324 36 + 17718866 CTTTCATGCCTCACAAATATTACCA-CCGTCACTAGG
s cb4.chrX              10151379 36 + 21540570 CTTCCATTCCCCA-AAATTTCATCAGCCGCCCATGTT
i cb4.chrX              I 2284 C 0
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e caeJap4.Scaffold17934   199739 2948 +   591668 I
e caeSp111.Scaffold409     45566 567 -   201088 I
e caeRem4.Crem_Contig0   1712387 1052 -  4500979 I

a score=333.000000
s ce10.chrX              4818360 13 + 17718866 TCACTCTGTGTCC
s cb4.chrX              10151415 13 + 21540570 TCCCCCAACAACT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     46133 13 -   201088 tcccccttttttt
i caeSp111.Scaffold409  I 567 C 0
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e caeJap4.Scaffold17934   199739 2948 +   591668 I
e caeRem4.Crem_Contig0   1712387 1052 -  4500979 I

a score=-3254.000000
s ce10.chrX              4818373 17 + 17718866 ATCCCCCGTGTGTTGCC-------
s cb4.chrX              10151428 20 + 21540570 GTCCTTTTTCTTGTGCCTCC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1713439 13 -  4500979 -------ATCTCACGATTGT----
i caeRem4.Crem_Contig0  I 1052 C 0
s caeSp111.Scaffold409     46146 17 -   201088 -------gtgTGCCGACCGTCGCA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3070996 1650 +  4147112 I
e caeJap4.Scaffold17934   199739 2948 +   591668 I

a score=15187.000000
s ce10.chrX              4818390 157 + 17718866 ---TTCTTTTTTAGACTACGGTAAACAAATGTCGTAGAATTCTGCGCATCGGACGCAATGCAGAT-TTTTTTCTTTTTCACTA---TCTATGT---TTTACAAATTGTTT--------TTATTTGTTTATATAC----------CACTGAAATCTTTTATCACTAATATATACATGAACATTTAA
s cb4.chrX              10151448 177 + 21540570 TTATTTTTCTGAGGGGTACGGTACGCAATTGTCGTCAACTTGCGCGCATTGTCCGCAGCGC--GCGCTTTCACTTCCCGGCAAGATTTCTTCTCTGTTCCGAACGAATTCACtttcattttg--tttcatttttgaatgtggttctctc----atttttctctcaatttttctctcaactttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1713452 143 -  4500979 CTCTTCTTCCCA-GTCTACGGTAAACAATTGTCGTCAGTTCTCGTACATTGTACGCAATGCAGACATTTTCACTTCCCGGCAAAAGTTTCCCT---TTCCGAACGGGTTC----------------------------------TTCTC----ATTATaccttcgttttttttggaaaattgcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     46163 149 -   201088 ---TCTTTTTAGTGCACATGGTAGTCAATTGTCGTAACCTTACGCGCATTGTACGCATTGCGGAC-ATTTCACTTCGCGGGTT---TTCTGCC--GTTCCGAACacggtt--------tttcttcttcatttct----------taaTTAAAACTTTAAATCGCATTGTT---------TTCCAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3072646 152 +  4147112 ---ttctcttgagGGGTACGGTAAACAATTGTCGTCGGTTGACGCACATTGTACGCATTGCGGAC-TTTGCACTTCCCGGCAA---TTCTGCC--GTTCGGAACGCgttt--------tttc--ctccattttc----------ttctt----tttgaattcgtaTTGTTCCTATCAAGTTTTat
i caePb3.Scfld02_0      I 1650 C 0
e caeJap4.Scaffold17934   199739 2948 +   591668 I

a score=98054.000000
s ce10.chrX              4818547 243 + 17718866 CAC--------TATTTATTTT---------------------------GTTTTCAGGG-AATTTCACCTGCGGAAAATGGAGGAAGCTGATGCTTTCATCAGAGACGCTTGCCGACATCTTGAGTGGTATG-----TTTTTT----------------GTCTGAAATCtaatttt------attctttaaaatat--tatta------t-tttCAGCTCGTTTGCTGATGAAGATGAAATAGAATTCAGCACACCTCAGATTTTTGAGTTTTTAGTAAGGtaat-------atttattatttttgatttcgttttattaatt-
s cb4.chrX              10151625 204 + 21540570 ctt--------attttattttaa-------------------------tttttcagggaaaTTTCACCTGTGAGAAATGGAGGAGGCTGATGAGTTTATCAAGGAGGCTTGCGGACATCTTGAGTGGTATG-----TTgcct----------------attttcaatt---tttg----------ggggaAATCT--TTATA------A-TTTCAGTTCCTTTGCCTATAATGATGAAATCGAGTTCAGCACAcctcagatttttgagtttctagtCAGG-------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1713595 266 -  4500979 cag--------ataaaaatttgaaaaaaaatttaagtagatttgattgtttttcaGGG-AATTTCACCTGTGAAAAATGGAGGAAGCGGACGCGTTTATCAGAGAGGCTTGCGGACATCTCGGATGGTATG-----TTTTAA----------------TGATTCAAATTGATCTG------Tcacagtaaaaaat--ttgaa------t-tttcagttcatttgCCGACGATGATGATTTCGAGTTCAGCACACctcagatttttgagtttctagtCAGGTAATGAGTCATATGAAGTGCTTACTCATACA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     46312 257 -   201088 CAG--------AAATTATTTGTT-------------------------GATTTCAGGG-AATTTCACCTGTGAAAAATGGAGGAGGCTGATGCGTTTATCAAAGAGGCATGCAAACATATTCAGTGGTaagaatattttcatttgtgaTCAGATCATGATTGCTTGTT---TTTG------Gtattgaaaagaat--ataaa------t-tttcagttcgtTTGCCGATGACGATGATATCGAATTCAGTACACCtcagatttttgagtttctagTCAGGTAAA-------------TCTCTTATCGTGGGATTTCGTCAAA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3072798 280 +  4147112 gaggattttcaaaattttctttt-------------------------ttttacaggG-AATTTCACCtgtgaaaaatggaggaggCTGACGAGTTTATCAAAGAGGCATGCAAGCATATTGAATGGTGAGGGATTTTTTACGGGGGCTATAA-----ATTTTTCACA---TACGagggaaatgttgaaaaaaatcaatgaattctttt-tttcagttcgttTGCCGATGAAGATGATATTCAATTCAGTACGCctcagatttttgagtttctagtcaggtaaaaa-----atttagtttttccttttgaaa--taaacgag-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   202687 243 +   591668 CAA--------TAATTAgtttaa-------------------------attttcaggg-aattatTCCTTTGGAAGATGGAGGAAGCTGACGCATTCATCAAAGAAGCCTGCAGACATCTTGAGTGGTAAGGACTTGGCAAT----------------gtattc-------tttg------aaaaaaaaaaaaaa--gaaaa------tatttaaGTTCATTTGCCGACGATGATGATATCGAATTTAGTACACCTCAACTTTTTGAGTTCCTAGTCAGGTAAA---------TTGATAgtttctattatggattcgtgaatt
i caeJap4.Scaffold17934 I 2948 I 375

a score=-475.000000
s ce10.chrX              4818790 11 + 17718866 ttttattCACA
s caeRem4.Crem_Contig0   1713861  6 -  4500979 -TTTGTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     46569  7 -   201088 CTCTATC----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073078  6 +  4147112 ttttat-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   202930 375 +   591668 I
e cb4.chrX              10151829  0 + 21540570 C

a score=89853.000000
s ce10.chrX              4818801 125 + 17718866 ATATTTCAGATGTATTTGGAAAATAGATAATAGTAGTAAACAAACAATTTCGTCATATGTATATCCAAAAGTTATAACTACCAGGCTGCAACTTGGAAACGCAATTTCTAACTATCTGCAGGTAA
s cb4.chrX              10151829 115 + 21540570 ----------TGTATTTGGAAAATAGATGCCAAGAGTAAGACAGTCATCCCATCATATGTTTATCCCAACGTTATCACCGCGCGTCTTCATCTCGGCAATACGATCTCTACTTATTTGCAAGTAA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1713867 125 -  4500979 ATGTTTCAGATGtatttggaaaattgatagcagcagtaaaaaagaaattccatCATATTCATATCCCAATATCATAACCGCTCGACTTCATCTTGGAAATGCTATCTCCAACTATTTGCAAGTGA
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold409     46576 125 -   201088 AATGTTCAGATGTATTTGGAAAATCGATCCCAACAGTAGAAGTACTATTCCGTCATATATATATCCAAATGTTATTACCTCTCGTTTGCATCTTGGAAATGCAATCTCCAATTATTTGCAGGTAC
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3073084 123 +  4147112 --ttttcagatgtattTGGAGAATCGACCCAACTAGTAAAAGTACAATCCCAACATATGTGTATCCAAACATTATCACTGCCCGCTTGAATCTTGGAAATGCGATTTCCAACTATTTGCAGGTAA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   203305 125 +   591668 ATATTACAGATGTATTTGGAAAATCGATAACAACAGTAAAGCAGTTCTTCCTTCCTTTGTCTATCCGAACGTTATCACGAATCGATTGCATCTTGGAAATGCCATATCCAGTTACTTACAGGTAG
i caeJap4.Scaffold17934 I 375 C 0

a score=-5027.000000
s ce10.chrX              4818926 26 + 17718866 CGTCAACCCC-TGACTAA----TCTCAACTT
s cb4.chrX              10151946 23 + 21540570 CGGAAACCCCGTCGATA--------caattc
i cb4.chrX              I 2 I 16
s caeSp111.Scaffold409     46707 18 -   201088 AGGAGACCCC-cagtt------------ttc
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3073216 22 +  4147112 TGAAAACCCC-TCTTTC--------CCATTC
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   203430 23 +   591668 -------TCT-CCTATAACGTTCCTAAATTT
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1713992 31 -  4500979 I

a score=132400.000000
s ce10.chrX              4818952 205 + 17718866 -TATAA-----TTCCTTTCATTTCAGAAATTTCACATTCGCGGAGACACCGCCCTTCACACAGTTTTATACGGCAATATCAACAATCTTCGCAGTGCATTCATTGAACTGATAAGGAAATTGCCGGCCGACGCACAAGAGGCCGTTTCTCTAGGTAAACACTAATCTTCA------CTTC-------attaaaaaaaatttaaaaaaaaaG---ATTGATTTCAGAC
s cb4.chrX              10151985 202 + 21540570 -CCTAA-----TCTTTctcatttcagaaatttcacaTTCGTGGGGACACCGCCCTGCACACAGTATTGTACGGCAATATCAATAATCTACGCAGTGCATTCAttgaactgataagaaaattgCCCGTCGACTCATCGGATGGCGCCTCTCAAGGTAAACACTGATCCT--------CTTAGAATCGCATTGCAATAA--------GAACGT---GCGAGTTTCAGAT
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   1714023 195 -  4500979 -TACAA-----TTTCAATTATTCCAGAAACTTCACATACGCGGGGACACCGCCCTTCACACAGTCCTCTATGGCAATATCAACAATTTACGCAGCGCATTCATTGAGCTGATAAGAAAGTTGCCTGCCGACGCAATTGAAACTGCATATCAAAGTAAACACTGATCCT--------ctta-------attacaaaaa--------aaatca---atgagttTCAGAT
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold409     46725 198 -   201088 -tagaagaattATTGTTTCATTCCAGAAATTTCACATTCGTGGGGACACCGCCCTTCACACTGTCTTGTATGGCAATATCAATAATCTTCGCAGTGCATTCATCGAGCTGATAAGGAAATTGCCGGTCGACGCAACAGAAATTTCTTCCCAAGGTAAACACTGATCCT--------CTCT-------GATCGAAGAG--------TAATGG-----GGGTTTCAGAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073238 200 +  4147112 -TGGAAACA--ATCATTTCATTCCAGAAATTTTACATTCGCGGAGACACCGCCCTTCACACAGTGTTATACGGCAATATCAACAATCTTCGCAGTGCATTCATTGAGCTGATAAGAAAATTGCCGGCCGACGCGACAGAGATTGCATCCCAAGGTAAACACTGATCCT--------CTta-------aacaagagaa---------aatggCGGATGGGTTTCAGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   203453 200 +   591668 TGAGAA-----TTCCTA----TTCAGAAACTGCACATACGTGGCGATATTGCCCTCCATACTATACTCTACGGCAACATTAACAACCTTCGCAGTGCATGCATCGAACTGATAAGAAAATTACCGATTGACTCGCAGGAGAAAGTTGACCAGGGTAAATGCCcgttttaaatatttctgc-------attgataaaa--------attcag---attgcggtcacac
i caeJap4.Scaffold17934 C 0 I 24

a score=14226.000000
s ce10.chrX              4819157 35 + 17718866 CAGGGTCATCAGTTTCTGGAAAGTGTAGTCAAACA
s cb4.chrX              10152187 35 + 21540570 CAGGGTCAGCAGTTCCTGGGGGCCGTCTTTGATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1714218 35 -  4500979 CAAGGTCATCAGTTTCTTCTGACTGCaattgaaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     46923 35 -   201088 CAAGGTCAACAGTTCTTGGAAAGCATCATTGATAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073438 35 +  4147112 CAAGGTCAGCAGTTCTTGGAAAACGCCTTTGAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   203653 24 +   591668 I

a score=50898.000000
s ce10.chrX              4819192 78 + 17718866 CGAGAAATCACAACCAGAATGGGTTCCTGTGTACTGTCGTGGATTGAACAGAAATCGGGAATGGAAATTGCCAAATGT
s cb4.chrX              10152222 78 + 21540570 TTTGGAATCGCAACCAGAATGGGTTCCTGCATATTGTAGAGGATTGAACGAGACACAGAAGTGGATTCTTCCAAACGT
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   1714253 78 -  4500979 tttggaatCGCAGCCGAGATGGGTCCCTGCCTATTGTCGTGGATTGATAAAAACAGAAGAATGGATTGTTCCAGATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     46958 78 -   201088 TCTAGAATCACAGCCAAAATGGGTTCCCGCGTATTGTCGTGGCCTGAATAACACACTAGAATGGAAATTGCCAGATGT
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3073473 78 +  4147112 TTTGGAGTCACAACCCAAGTGGGTTCCTGTGTATTGCCGTGGTTTGAACCGAAAAGAAGAGTGGATATTGCCAGatgt
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17934   203677 78 +   591668 TTTGAAATCACAGCCGGAATGGGTGCCTGTCTACTGTCGAAGTCTCGTCAAGCAACACGTCTGGAATGCACACAATGT
i caeJap4.Scaffold17934 I 24 C 0

a score=-3511.000000
s ce10.chrX              4819270 22 + 17718866 --------GTGTGGAATT--TTTTTTTTGAAA
s caeRem4.Crem_Contig0   1714331  5 -  4500979 -------------CAGTT--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     47039 24 -   201088 --------TTTTAGAGTTGtcttgttttgaaa
i caeSp111.Scaffold409  I 3 I 3
s caeJap4.Scaffold17934   203755 30 +   591668 CAGTAATTactgtaaatt--ttctaatagaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3073551 31 +  4147112 I
e cb4.chrX              10152300 39 + 21540570 I

a score=-5565.000000
s ce10.chrX              4819292 111 + 17718866 TTTGAATTGAAGCTAAACTCTGAAACAAAAAGCCGAATGTATtgttgtaccgacattattcattaataattagtgtgaaaatatagaaaagacgatttatctaaaaaaaag
s caeRem4.Crem_Contig0   1714336  34 -  4500979 -------------------------CAACGAGTCGAAAGgaat-------------------ttgataa---------------------------------aataaaaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   203785  54 +   591668 -----------TTCACGCTATGAAATACTCAGC--AACGTACA-------------------TAAATAC-------------------------ATATATCCTCAAATAGG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3073551  31 +  4147112 I
e cb4.chrX              10152300  39 + 21540570 I
e caeSp111.Scaffold409     47063   3 -   201088 I

a score=-2805.000000
s ce10.chrX              4819403 257 + 17718866 ttt-cactttaactgaagcact-tgagaatgt----actcaaag--gtagcttgaaatttaacaattgccaattatcgaattatcaaacttgattgacatccttcataccatttttgagcacttttcaaatttctgagcttg-------------attgaatgctaatttc--------aaattatcaaaacttttttctggactctgacattaa------------------ttgtctaatTTT-------------CTATGAAACAAACAGT---------------------------TTTATTTCGAAC-----AAGAACTTGAAAAC----TTGAATTTAGAGTTTTT
s caeJap4.Scaffold17934   203839 344 +   591668 CTTACACTTAAAC---GGTACTCTGGGAACATCGTGGCGCAGGGATGCaggcttttcttttttacttactaagttttgtatttttttattt---ttacatccctatttcgattttCTGGc---tgcaaaaattgagaaagtgcgagaaaaaaacaatggaaTGACGATTTTTGTTggagaatttgagaaaaaaatttattgtatttaaaaacaaagacattgcaacgcggtgtttgcgtacgtttgaaattcaaacggaaatgaaagaaatagtatagcaaatgaagagaagTGTTCTCATTTTCGttggaattttaaaagtacgcaaacaccgcgttgcaatttttattttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3073551  31 +  4147112 I
e cb4.chrX              10152300  39 + 21540570 I
e caeSp111.Scaffold409     47063   3 -   201088 I
e caeRem4.Crem_Contig0   1714370   0 -  4500979 C

a score=-1009.000000
s ce10.chrX              4819660  4 + 17718866 --------AATC------
s caePb3.Scfld02_0       3073582  4 +  4147112 --------AACC------
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17934   204183 18 +   591668 acaataGTAGtcaaaatt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10152300 39 + 21540570 I
e caeSp111.Scaffold409     47063  3 -   201088 I
e caeRem4.Crem_Contig0   1714370  0 -  4500979 C

a score=-1836.000000
s ce10.chrX              4819664 5 + 17718866 ---TATTT
s caeSp111.Scaffold409     47066 5 -   201088 ---tttta
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3073586 5 +  4147112 ---TTCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204201 5 +   591668 aaaca---
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10152300 39 + 21540570 I
e caeRem4.Crem_Contig0   1714370 0 -  4500979 C

a score=910.000000
s ce10.chrX              4819669 1 + 17718866 T
s cb4.chrX              10152339 1 + 21540570 t
i cb4.chrX              I 39 C 0
s caeSp111.Scaffold409     47071 1 -   201088 t
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073591 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204206 1 +   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1714370 0 -  4500979 C

a score=44687.000000
s ce10.chrX              4819670 96 + 17718866 TTTCAGAATACTCCGGAAACCTTCCCACTTTGCAACTTCAATAAACCCATCCCAAACTCTGATCCTAGAAAATGGATTTCGCAATACATAAACTCC
s cb4.chrX              10152340 90 + 21540570 tttcagaatgagccGGAGCTTTTACCGCTTTTCAAATCACAAAAGTATCC------CGCCGATCCTCGCAAGTGGATTTCTCAATATATCAACTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1714370 96 -  4500979 tttcagaacGAGCCGGAAGTGTTCACACTTGATCAGTTCGACAAGCCTTCGATGTATTTCAAATCACGCCAATGGATTTCTCAATATATCAACTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     47072 96 -   201088 ttttagaaccACCCGGAGAAATTTCCCTTCTCAGACTTTGATAAGCCTGCAACAAACTTTGATCCTCGCCAATGGATTGCTCAGTATATCACATCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073592 96 +  4147112 TTTTAGGACCAACCGGAGACTTTTCCACTTTCTCACTTCAACAAGCCCGCTAAGCACTTTGATCCTCGGCAGTGGATCGCTCAGTACATCAACTCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204207 96 +   591668 tttcagaatcatCCAGAATTATATCCTCTTCACATGTTCGATCATCCAATGGCACAATCAGACCCTCGAAAATGGATTTGTCAGTACCTGAACTCC
i caeJap4.Scaffold17934 C 0 I 30

a score=877.000000
s ce10.chrX              4819766 27 + 17718866 AGTCACACAGAGAAAGACTTCAACTTC
s cb4.chrX              10152430 27 + 21540570 AGCGGCGCGGACCACATTCCAACTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1714466 27 -  4500979 AGTTGTGTAGACCAGAAGCCCGCACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     47168 27 -   201088 AGTCACACAAAGGGGAACGTCGAACTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073688 27 +  4147112 AGCCACATCGATCAAAGTGTCAAAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   204303 30 +   591668 I

a score=29983.000000
s ce10.chrX              4819793 101 + 17718866 AAGCTGACAAAGCCTGCACTTCCACCAAAGCCAATTTTTGCCAAAAAAGTCGATAAGG------AA------GAAGAAACTGTTGAAGA---------AGCGACGGAAGAAAATAATGAAAA
s cb4.chrX              10152457 107 + 21540570 AAACCTTCGAAGCCTGCACTTCCACCAAAACCAGTTTTCGGTGGAGAA---CAGATAC------AA------CAAGATAGCATTGAAGGTCAGACTTTTTTGTCTGAAGAAACTGATGAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1714493 113 -  4500979 CGGCGCCCAAAGCCTGCACTCCCACCAAAACCAGTTTTTGTCGAAGGA---CAGACATTATCTGAA------GGAGATCAGGTTGAAGAACCAGAACAAGTCCCTGATGAAGTTGATGAAAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     47195 113 -   201088 CAACGTCCCAAGCCAGCACTCCCGCCAAAACCTGTATTCGCtgaagaa---caaaaga------ataAGACAGAAGAACCGGTTGAAGAGCCAGTTGAGGTCACCGAGAAGGTGGATGAGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3073715 107 +  4147112 AAGCGTCCGAAGCCAAGTCTCCCGCCGAAACCTGTATTCGTCGACGAA---CAAAAGA------AC------GTAGAACCGGTGGAGGAGCAAGTCGAGGTCACTGAAGACGTTGATGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204333  98 +   591668 AAAAAAGGAAAGCCTGCGTTGCCACCGAAACCATTGTTTGCTGTAAAA---AATCACA------AC------GATGCAGACGATAAGAG---------TGTGAAAGTTGAAAAAGATGTGAA
i caeJap4.Scaffold17934 I 30 C 0

a score=-1658.000000
s ce10.chrX              4819894 3 + 17718866 CTT--
s cb4.chrX              10152564 1 + 21540570 --T--
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold409     47308 1 -   201088 --T--
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3073822 1 +  4147112 --T--
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   204431 3 +   591668 --CGA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1714606 3 -  4500979 I

a score=34289.000000
s ce10.chrX              4819897 191 + 17718866 ------AGTTTTACAAGCTGAATATGAGCAGAAACTTGCAGAGTATAAAGCTG--------------TTAGTTTGTCAT-----TG-------AAAGTGTCAAAATTTCATACTAACTATTTCAGTTACAAGAGAAACGCTCGCAGTTTGAAGAGCAAAACAGAGAGCTCGAAAATAAGCTATCAAAATACAAGCCAGAACTTATTGAAGCTCTTGATGACCC
s cb4.chrX              10152567 193 + 21540570 ------CCATCTCCAGTCGATCTTCGACCAAAAACTGGATGAGTACAAAGAGGTGA---------GGTGCACTTCTGACGAGGACA---------AAAGACGAGATCTTA------TCTTTTCAGTTGCAAAGAAAACGGTTCAATGTTGAGGATGGGATCAGATCTCTACAGAAGAAGCTCTCGGATATTGATCCTGAACTCATCGAGGCTATTGATAATCC
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1714609 190 -  4500979 ------ACTTTTACAAGAAACGTACGAtaagaaattggaagaataTAAAAAGGTAC-------------CTCTTCTTAC-----TT---------ATCGTCGCAGCctcacttcttttctttcagttgCGTGCAAAGCGTCTTGAAGTGGAAAAACAATGTCAAGAGTTGCAAAGTAAATTGACGGAATATAGTCCTGAACTCATCGAGGCACTTCAAAATCC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold409     47311 189 -   201088 ------TGTCTTGCAAGCAGAATACGAGATGAAACTGGAAGAGTATAGAAAGG--------------TTAGCTCATCGT-----CGAAATGGGAAACcgat--aatctt-------ttttttcagttgcaACTCGAgcgttcaaaaattgaaaaacaaaatgaagagCTTCAAAGTAAACTTTCTGAATACGATGCAGAGCTTATCGAGGCTTTGAACGATCC
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3073825 187 +  4147112 ------AGCCTTGCAGGCGGAATACGACACAAAACTGGATGAGTACAAGAAGGTGA----------CTTGACTCACTAT-----TT---------GCTGATACAATCTTA------TCTTTTCAGTTGCAAGACCAACGTTTCAAATTGGAGGAAAAGAACAAGGAGCTTCATTTGAAGTTGTCTGAATGGGATCCGGAACTTATTGAAGCGATGGAGGACCC
i caePb3.Scfld02_0      I 2 I 134
s caeJap4.Scaffold17934   204434 204 +   591668 AGCAGCAATGTTGCAGGAAAAGTTTGATGATAAATTTCTAGAGCTTAAAAATGTGAGTTAAAATAGCTaaacaatttgt-----tt-------tattCTTCATAATTCT-------CCTCTTCAGCTTGAGAATCGCCGCGTCAAAGTTGAAGCTGAAAATGAGATACTGATTTCCAAACTTTCCCAGTATGACACCGAGCTTATTGATGCTCTTGCCAATCC
i caeJap4.Scaffold17934 C 0 C 0

a score=22247.000000
s ce10.chrX              4820088 190 + 17718866 AGAAGCATACG-----------------TTCAGAAGTTGATGGTTAGTTGCTAG----------------------------------------------------------------------GTACATCTA----GTTTTGAG----------------ATAACTTTTCATTT--TCAGGGCAAAATTGCTGAATTAAATAAGCAAATGGAAGAAGACACGCAGATAATTGAGAACACAAAACAAGCCAATGCTCAGAAGAAACTGCAAATGAGAGAGGAACTGAAAAACTTGGTAT
s cb4.chrX              10152760 189 + 21540570 AGATGTCTATG-----------------TCGAGACGCTTGTGGTGGGCTG--------------------------------------------------------------------------AATGATGTTTGGGATTTtgtaga--------------at---ttcgaattt--ttaggagaagattctgaagttgaATAAACAGGTGGAAGATGACACAGAGCTGCTGGAGAACAGAAATCAGGAAGCTGCCAAGAAGAAGTTAGCCAGAGCCGCTGAGTTGAAGAAAATGGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1714799 189 -  4500979 AGAGGACTATG-----------------TTAAAAAACTAACGGTAGGTTT--------------------------------------------------------------------------aacagttttc---attttagcca--------------attcatttctgttt--ttaggTGAAGATTGCCGAGTTGAATCAGCAGATGGAGGAAGACACTTTGACTCTGGAGAAAAGAAGTGAGGAGGCCGTTCAGAGAAAGTTGGAGTTGGCGAAGGAGATGAAGAAATCGGTAT
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold409     47500 189 -   201088 AGAACATTATG-----------------TCGAACAGATAGCTGTGAGTTCTGGGAAGGAA----------------------------------------------------------------AGAAGTCAT----at----------------------aataattc-aaatt--tcagataaagATAGGAGAATTGAATAAgcaaatggaagaagataCGTTGACATTAGAGAAAAGACAACAAGAGGCTGTTCAGAGAAAGTTACTATtatcagaagaaatgaagaagctGGTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074146 288 +  4147112 aaaaaagaatgaaacggcgtttcatttttctagc-gGTTGCTCTGCGGTTGGGTGGTGAAATTAAGTTTTTCCCAAGCCTACTCAGTTTTACCATTACTTTAAAAGAGCCAATTTACAGCTTCTAAAAATCTT----ATTCTGTGCAAAACATTCTTAGAAATTAAtt----gtt--tcagatcaaaatcgCTGAGTTAAACAAGCAAATGGAAGAAGACACAATGATTCTAGAGAATGGGCGTCGGGAAGCTGCACAAAAGGAGATGGAGTTAGAGGAGGAGATGATTAAAATGGTGC
i caePb3.Scfld02_0      I 134 C 0
s caeJap4.Scaffold17934   204638 186 +   591668 ACAAGCCTACG-----------------CGGAAGAATTATTGGTAA------------------------------------------------------------------------------AATTAACTT----TTtatgaata--------------tttatttttggttttatcAGGCTAAGATAACCACACTTAACGAGCAAATTGATCacgaaactttgaaaattgaaaagaggaaaacaattgcggctcagaaaaaaatggatatggttttggaaatgaaaaagaTGGTAA
i caeJap4.Scaffold17934 C 0 C 0

a score=-2485.000000
s ce10.chrX              4820278 10 + 17718866 ---GAGAAAATTA
s cb4.chrX              10152949 10 + 21540570 ---GTTAAAGATA
i cb4.chrX              C 0 I 1146
s caeSp111.Scaffold409     47689 10 -   201088 ---GACAGTATTC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074434 10 +  4147112 ---GTTCGAGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204824 10 +   591668 CCAATCAATG---
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1714988 35 -  4500979 I

a score=-4105.000000
s ce10.chrX              4820288 23 + 17718866 TGCCTTCAGAAGTTTAAAAAAGT---------
s caeSp111.Scaffold409     47699 21 -   201088 CTCTTCTCGAA--AGAAAACTGT---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074444 21 +  4147112 ATCACTAAGAA--TTTGCAATGC---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204834 25 +   591668 -----TGACAA--ATCAAAACTcactttaatt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10152959 1146 + 21540570 I
e caeRem4.Crem_Contig0   1714988 35 -  4500979 I

a score=-3910.000000
s ce10.chrX              4820311 3 + 17718866 -TT--A
s cb4.chrX              10154105 3 + 21540570 --TCA-
i cb4.chrX              I 1146 C 0
s caeSp111.Scaffold409     47720 2 -   201088 -TT---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074465 2 +  4147112 -CT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   204859 3 +   591668 ttt---
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1714988 35 -  4500979 I

a score=-1412.000000
s ce10.chrX              4820314 192 + 17718866 AATTCCAGGGTACGGATGATGAAGAAATAAGGC-----GAATTCAAGAAATGGAAGCAGATTTGGAAGGTGTTGATG--AGAGGATTGAAAGTAACGTGATGT----------TAGC-TGAAAAGCTTGTAAGTTTAAGTTTAATCAGCTGTAGCCAAAAAATCTTTGAATAACATATACGGTAATAT-----TTTCAGAGAAAGAAGCTGTCAA
s cb4.chrX              10154108 173 + 21540570 AATTTCAGGGTGTTCATAGTGAAGAATTGAAAA-----GAGTTGCTGAGATGCAGTCTGCTTTGGAAGGCATTGATG--AGCGTATTGAGGATAATATAGCTA----------TGGC-TGAAAAGCTTGTGAGTTT--------------GCTTTTCCGCATTATTCATCA-----Ctgaccaaattt-----ttccagaaggaAAGAGTTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1715023 176 -  4500979 AACTTCAGGGTACGAATGATGAAGAAATGCGGA-----CAGTGGAAGAGATGGAGTTGGCTTTGGTCAAGATGGATG--ACCGGATTGAAGAAAATCGTTTGC----------TGGC-TGACAAGTTGGTGAGTTT------------CAGCTTCACGGC-CTATTGGGAA--------ACCTAACTTTCGGGTTTTAGAGGAAGAAACTGGCAA
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold409     47722 170 -   201088 GTTTTTAGGGTACTCATGACGAAGAGATGAGAA-----GAGTTAATGAAATGGAGAATGCTTTGGAAGGATTTGATG--AGCaacttgaaaataacaaaatac----------tGGC-CCACAAACTTGTAAGTCA--------------ACAATCAGATGGTATCGGAAT--------GGGTACCTT-----TTTCAGCGTAAGAAACTCGCAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074467 174 +  4147112 ATTTTCAGGGTGCTCGCCATGAGGATATGTGGATGTTGGAGGACATTGAACAGAGAACGGCAGATATGGATAGAATGGTAGCCGATTACAATCAAAGCAATGCATTGAAAGTATGACAACACAAATCTGGTTAAAA--------------ACAACCCACTGTT----------------------TCT-----TTTCAGAGCCAGAAGTGTGCCA
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17934   204862 117 +   591668 attttaagggAGTACAAAATCGAGAAGtcgaaa-----atattgaaaaaatggaagccTCCCTAAAGGTTATCgatg--gaaaaatagaaaataatgaagttt----------tggt-ggaaaaattaaagaaaa--------------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=1146.000000
s ce10.chrX              4820506 22 + 17718866 AAATTGATGATG---ATGTGCAAAG
s cb4.chrX              10154281 22 + 21540570 GAATCGATGAGA---ATGCTTGGCG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1715199 22 -  4500979 GAACAGATGAGA---GTAATGTTAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     47892 17 -   201088 AAACAGATGAGA---AT-----CAG
i caeSp111.Scaffold409  C 0 I 8
s caeJap4.Scaffold17934   204979 25 +   591668 gaaTTAGTGATATAGATGGGGAAAG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074641 25 +  4147112 I

a score=126086.000000
s ce10.chrX              4820528 171 + 17718866 CATGTACGTACTCGAGCAAAGAAGTAAAGAACTGGATGCGATGGTTCGGAAACAAGAGCAAGACATGGTGAAAATGCAAGAGGAACGGCATGCACTCCGAAAGCAAGAAGAACGAGAAAGCGAGGCGGTCAACAGATCGTTTGCTATCATCTACAATATTCTTCTTCAGGT
s cb4.chrX              10154306 171 + 21540570 GATCTATGATTTTGAGAAGAGGAGCAAGGATTTGGATGAGATGGTTCGTAAGCAGGAGGATGAGATGTTCAAAATGCAGGAGGAAAGAGCAACACTTCGTAAGCAGGAAGAACGTGACAATGAGACTGTTAACAGAGCGTTTGCTATCATCTACAATATTCTGCTCCAGGT
i cb4.chrX              I 3 I 1
s caeRem4.Crem_Contig0   1715224 171 -  4500979 GTTGTATGAGTATGAGAAAAGAAGCAAAGATTTGGATGAGATGGTacgaaaacaagaagaagatatGATGAAGATGCAGGAAGAACGAACAACTCTTCGTGCCCAAGAAGAACGGGACAGTGAAGCTGTCAATAGATCCTTTGCTATCATTTACAATATTCTTCTTCAGGT
i caeRem4.Crem_Contig0  I 3 I 1
s caeSp111.Scaffold409     47917 170 -   201088 TCTTTATGattatgagaaaagaagcaaGGAATTAGATGAATTGGTTCGGAAGCAGGAATCTGATCTGTTGAAAAGACAGGAAGAACGAGTCACACTTCGAAAGCAAGAAGAACGAGATAGCGAGGCGGTCAATAGGTCATTTGCTATCATTTACAACATTCTTCTTCAGG-
i caeSp111.Scaffold409  I 8 C 0
s caePb3.Scfld02_0       3074666 171 +  4147112 CCTCCAAAAGCAAAATGGACGAATCCGAGAGCTAGATGAGGTGGTTCGTAAGCAGGAGGCCAATATGATGAAGCAAGAGGAGGAGCGAGCCGCACTCAGAAAACAAGAGGAACGTGATAGCGAAGCGGTCAACAGGTCTTTCGCTATCATTTACAACATCCTACTCCAGGT
i caePb3.Scfld02_0      I 25 I 39
s caeJap4.Scaffold17934   205004 171 +   591668 TTTTTATGAATACGAGAAAAGAAGCAGAGATTTGGACGAAATGGTGCGAAAGCAGGAGAATGAGATGATCCGAATGCAAGAGGAACGTCTCACACTTCGGAAGCAAGAAGAACGGGAAAGTGAAGCAGTCAATCGTTCGTTTGCTATTATCTACAACATTTTGCTACAAGT
i caeJap4.Scaffold17934 C 0 C 0

a score=-123.000000
s ce10.chrX              4820699 1 + 17718866 T
s caeJap4.Scaffold17934   205175 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e cb4.chrX              10154477 1 + 21540570 I
e caeSp111.Scaffold409     48087 0 -   201088 C
e caeRem4.Crem_Contig0   1715395 1 -  4500979 I

a score=-1170.000000
s ce10.chrX              4820700 6 + 17718866 AAAATT---
s cb4.chrX              10154478 6 + 21540570 AGaact---
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold409     48087 2 -   201088 ----TT---
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   205176 6 +   591668 ---ATTACA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeRem4.Crem_Contig0   1715395 1 -  4500979 I

a score=422.000000
s ce10.chrX              4820706 8 + 17718866 TCTTGCTC
s caeSp111.Scaffold409     48089 8 -   201088 TTTTGCTC
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   205182 6 +   591668 TATTGC--
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e cb4.chrX              10154484 0 + 21540570 C
e caeRem4.Crem_Contig0   1715395 1 -  4500979 I

a score=-218.000000
s ce10.chrX              4820714 40 + 17718866 TTATTTCTCGCATAGTTATCTGAGAAGGGCTGTTTTAGAA
s caeJap4.Scaffold17934   205188 16 +   591668 ------------------------GAAAGCGGTGTTTGAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e cb4.chrX              10154484  0 + 21540570 C
e caeSp111.Scaffold409     48097  0 -   201088 C
e caeRem4.Crem_Contig0   1715395  1 -  4500979 I

a score=0.000000
s ce10.chrX              4820754 52 + 17718866 GGGTCTTCCATGGAAAaaaataaaataaaataaaataaaaCTTTCAGAAGAA
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205204  0 +   591668 C
e cb4.chrX              10154484  0 + 21540570 C
e caeSp111.Scaffold409     48097  0 -   201088 C
e caeRem4.Crem_Contig0   1715395  1 -  4500979 I

a score=-426.000000
s ce10.chrX              4820806 38 + 17718866 TTTTCAGTATCTATTTATGAGCGGCCTTGTAATGTATA
s caeRem4.Crem_Contig0   1715396 18 -  4500979 TGTCCATCATCTTATTAT--------------------
i caeRem4.Crem_Contig0  I 1 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205204  0 +   591668 C
e cb4.chrX              10154484  0 + 21540570 C
e caeSp111.Scaffold409     48097  0 -   201088 C

a score=-361.000000
s ce10.chrX              4820844 23 + 17718866 TTCTTGGATATTTTCCGCtattt
s cb4.chrX              10154484 22 + 21540570 ttctt-gaaaatctcttacaact
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1715414 15 -  4500979 --------TACTGTTTTCTAGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205204  0 +   591668 C
e caeSp111.Scaffold409     48097  0 -   201088 C

a score=567.000000
s ce10.chrX              4820867 6 + 17718866 ttcaaa
s cb4.chrX              10154506 6 + 21540570 tttaaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1715429 6 -  4500979 ATTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48097 6 -   201088 Atcatg
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205204 0 +   591668 C

a score=302.000000
s ce10.chrX              4820873 2 + 17718866 tt
s caeRem4.Crem_Contig0   1715435 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48103 2 -   201088 tt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205204 0 +   591668 C
e cb4.chrX              10154512 1 + 21540570 I

a score=-479.000000
s ce10.chrX              4820875 20 + 17718866 ttaaagaaaaaaattaattt
s caeRem4.Crem_Contig0   1715437  2 -  4500979 TT------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48105 20 -   201088 ttgaaataagaaattattgt
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   205204 20 +   591668 TTAtagaaaaacttgaattt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e cb4.chrX              10154512  1 + 21540570 I

a score=60.000000
s ce10.chrX              4820895 20 + 17718866 tttttGCGCGTCCCAGCTTT
s caeRem4.Crem_Contig0   1715439  7 -  4500979 -------------CAGCATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205224  0 +   591668 C
e cb4.chrX              10154512  1 + 21540570 I
e caeSp111.Scaffold409     48125  0 -   201088 C

a score=0.000000
s ce10.chrX              4820915 125 + 17718866 AGGTCTTGATTGGCCAATTGCGTGATTTTTAGAATATGCGCAAAACAAAAAAAATTTCATGGTCAATGTCCATCAAAATTTTTAAAGGGGTATTTGGACGATATTCCCAAGTGCACTACTCCTAT
e caePb3.Scfld02_0       3074837  39 +  4147112 I
e caeJap4.Scaffold17934   205224   0 +   591668 C
e cb4.chrX              10154512   1 + 21540570 I
e caeSp111.Scaffold409     48125   0 -   201088 C
e caeRem4.Crem_Contig0   1715446   0 -  4500979 C

a score=-205.000000
s ce10.chrX              4821040 18 + 17718866 TCATTTTAACTATTCATA
s cb4.chrX              10154513  6 + 21540570 tcattt------------
i cb4.chrX              I 1 C 0
e caePb3.Scfld02_0       3074837 39 +  4147112 I
e caeJap4.Scaffold17934   205224  0 +   591668 C
e caeSp111.Scaffold409     48125  0 -   201088 C
e caeRem4.Crem_Contig0   1715446  0 -  4500979 C

a score=6400.000000
s ce10.chrX              4821058 10 + 17718866 TTTTAGCATT
s cb4.chrX              10154519  7 + 21540570 ---tagCATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     48125 10 -   201088 tttcagcaTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074876 10 +  4147112 tttcagcACT
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold17934   205224 10 +   591668 tttcagcact
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1715446  0 -  4500979 C

a score=57748.000000
s ce10.chrX              4821068 55 + 17718866 GCGATCATTATCGTGGACGCCTGGCCATGGAATCATTCACACGAATTCATTTGTA
s cb4.chrX              10154526 55 + 21540570 GCGACCATTATCGTGGACGTTTGGCAATGGAGTCATTCACCAGAATTCACCTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1715446 55 -  4500979 GTGATCACTATCGTGGACGTTTGGCAATGGAATCATTCACCAGAATCCACTTGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48135 55 -   201088 GTGATCATTACCGTGGACGTTTGGCAATGGAATCATTCACAAGAATTCATCTTTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074886 55 +  4147112 GCGATCACTATCGCGGACGCTTGGCAATGGAGTCTTTCACTAGAATTCACTTGTA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   205234 55 +   591668 gcGATCACTATCGTGGACGTCTTGCGATGGAATCGTTTACTAGAATACACTTGTA
i caeJap4.Scaffold17934 C 0 C 0

a score=205.000000
s ce10.chrX              4821123 1 + 17718866 T
s cb4.chrX              10154581 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1715501 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48190 1 -   201088 C
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   205289 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3074941 1 +  4147112 I

a score=61855.000000
s ce10.chrX              4821124 335 + 17718866 TGCATGGAGATTCTGGAGATGTTAAGAGAAAACGGTGCTCTGAAACAAGCAGTTGGAATCCTTCAATCAGAGGTTT----TTGC--TCTTTTTTAGTTGT-------TTAA---AGTACAATTTTCT---------TTCAGATTTATGTCGAGGAGCAGAAGCAGTACGACAAACAGTTTGAA-CTGTTGCATCAG-GACTATCAAGAAATCAGCGACTTGAATGACCAACTGTTTTCTGAAATCCGTCTCAAAAAGCCTGACTTCCAAATGCC---AACCACCTAA---------------ATGCA--------------------------ACTCATAATCGAAATTTTTTCGTTT-------------TTTTTTCATA--------------TCTTTTTAAGCATAT-CTTTGTTTTACGGATTAATTTGT
s cb4.chrX              10154582 394 + 21540570 AGCATGGAAATTCTGGAGATGTTGAGGAACAATGGCACAATGAAGCAAATTGTTTTGCTGTTACAGTCTGAGGTATCGAATCAG------TTttagtatt-------taaa---aaaagattataTT---------TCTAGATTGATATTGAAGAGCAGAAGCAGTACCAGAAGCAATTCGAG-TTGCTAACTCAG-GATTTCCAAGAGATGAGCAATTTGAATGAGGAGCTCTTCTCTCAAATCAGACTCCAGAATCCAGACTTTAAAATGCCATTGGCTGAATAAC--TCACGCCTAATGCTCCAACACCTGCACCGCCTC----------TC-AAAAATCACCATTTTCTCACCAGTTACCATCCAATTCATTTAACCACTTATAGTTTTCTTCCGTATGATTAATCAcatctttcttatttttctttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1715502 362 -  4500979 TGCATGGAAATATTGGAGATGTTGCGAGACAATGGTGCTCTGAAACAAACTGTCATGTTGCTCCAATCAGAGGTTT---GTTAT------TTTAGGcatt-------tcaatttcatacatttcattt------tgttcagaTTGATGTGGAAGAACAGAAGCAATACGATAAACAGTTCGAG-CTGTTAACTCAA-GACTTCCGTGAGATTAGCGATTTGAACGATCAACTATTCTCTCAAATCAAACTGCAAAATCCTGATTTCCAACTGCC---TGCTCAATAAT--TC----------TTCCA--ACCTACACTGCGTC----------ACtcaaaatcgacatttt-tcacTA-------------CCATATAAcc-----tagtttttcttttctttattcaaC-CTTGTGTCTTATTAATCATTTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48191 349 -   201088 TGTATGGAAATATTGGAGATGCTTCGAGAGAATGGTGCTTTGAAACAAGCCGTTGGCTTGCTTGAATCAGAGGTAT----TCACGAATTCATCTATCATT-------TGTT---CATatgtttcttt-----------cagattaCTGTTGAGGAACAAAAACAGTATGGAAAACAGTTTGAG-TTGTTAA-ACAGAGACTACGATGAGATCAACAACTTGAACGAACAACTACTGTCTGAAATTAAACTGCAACAACCCGACTTCCAAATGCC---TGCTGTCTGA----------TGA--TACCA--AACAACATCTCGAA----------ACTCAAAATcaccatttt-tcatca-------------tatttTAACC-------GT-----TCcgtttcattgttt-----ttatcaCTTAATCATTTCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3074942 330 +  4147112 TGcatggaaattttagaaatgttgcGAGACAATGGCGCACTCAAGCAAACTGTCGCGCTGCTCGAGTTGGAAATCT----TTAA-----------------------------------------------------------------TGAAGGACAAAAGCAGTACGACAAACAGTTGGAGCTTGTCAA-TCAG-GACTACCAGGAAGTCAAAGAACTCAATCAAGGGCTGCTTGCTGAAATCAAGCTCAAAGATCCGGATTTCCATATGCC---TGTTGTCTAAT--TC--GGTTGA--TTCCT--CCAAACACATTGAACCACAAAGTCActcaaaatcaacatttt-tcattt-------------tttttataat-------gttTGTCTCTTACTCAATATTC-CGtatattcatttattcatttca
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   205290 331 +   591668 TGCATGGAGATAATGGAGATGTTGAGAGAAAACGGCACTTTGAAACAGGCTGTTAATTGTCTTGAGAATGAGGTTT--GTCCGC------ATTTGTCAGTGATACCGTAAA---CATGCaactttttcttttgattttcagaTTTACGCCGAAGAGAAAAAGCAATACGGAACTAAATGTGAC-ATGCTGAATCGT-GATTTGCAAGAAATATCCACATTGAACAAGACGTTGATTGCTCAAATCAAAGCTCACAATCAACATTTCAAACTACC---AAATGTTTGAGCATT----------TTCCT--------------------------TC-----------------CTACGT-------------CTCTTccata-------tttttccttttttttattatgg----------aATCATTCAT----
i caeJap4.Scaffold17934 C 0 I 7788

a score=43500.000000
s ce10.chrX              4821459 369 + 17718866 G----------------------ATCCTGTTTTTTTTAAC--TTTTGGATAGGAATAACCTTATACTGTGATCAAAGTTGG------ATCAAACAAGCATATTTTTGTTCCTCTCAACGCTC-CGCTGTCATTTGCCATTCAC----------------TTCA---TTTTTTT----CTAATTATT-TTATTGACTTTT------------------TGTTTGTTTGT--------------GTGTTAAACCGAAATGTTGTAAGAAAAT----TTTTTTAGTATCAT----T------CTAGTTCAATGAAAATTTTCTTTGTAAACCATCTTTAGA-----TGAGTGAGCGAAAAATTAAGA-----GTCTTATCAACG-----GGA-AGAATTATGACGTCA--CTTTT-----TTTTCAAATG-TTCAAAGCTTCCACTGATTGTCGT-----TTGAATCAAAATGACGCTCGTA------ATTTTTAGGGGAACAGGTGT
s cb4.chrX              10154976 475 + 21540570 ttttgaagttgtcattcaattcttttttgttttgtcatAA--CTTTGGATTGGCACAACCTTATGCTGTGATTGCTCTACACGGTCCGTCTAAGAAGCATATTTTTGTCCCTCTCACTGCTCATGCTGTCATTTGCCACCCCCGTTAAATCAATATTCGTCCCGCTAttttttagtgttgattatcatgattccttttttcagagttaatgttcttttcttttttcatgatttttgtcttaattgttg------actat------agaattttgtttttctgccCCGTAAACTCTGATATCAACGCAATAAATAGTTTCg-----agaagtttttgaatgaaccgaaaaagcaaaaaaatattcagc--gTCTTATCTAATAAGTAGGGTAGCATATTgacgtcattttttttgaattcttaaaCTGTTTTTGGGCGTATCTCTCCGATTGT-----GCGAACGGAAGTGAT-CTCATGATCGGTGTTACCAGAAGAAATGT---
i cb4.chrX              C 0 I 133
s caeRem4.Crem_Contig0   1715864 384 -  4500979 -----ACGTTGTCATTTAA---------AATTTCCCACAATTCTTTGGATGGGAATAACCTTATGCTGTGATTGTATTCCG------GTCTGAAAAGCATATTTTTGTCCCTCTCAACGCTCTCGCTGTCATTTGCCAACCAC----------------TTCCCCCCTTTCCTTATGTTGATTATCGTGATCcataatttcag--------------tcatttttcatatt-----------ttgttg------tcatt------aaaatgttgttttcc-------TAAACTTTGAGTTCAGTACAATAAatagttttg-----agaaatgtcagga-gaaacaagaaatcaaaaaattgagta----gtCTTATCAAAGACGGAGGA-AGAATCTTgacgtca----ttttgaaattttcaactg-ttttggGCGCGTCTTGTCAGTTTG-----AGGAACGGAAGTGAT-TTCATG---TGGATTA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48540 372 -   201088 C----ACATTGTCATTCAC----AACCTTTTGTTTCATAA--TCTCGGATAGGAATAACTTTATGCTGTGATTGTTTGATT------ATCTTTGAAGCATATCTTTATCCCTCTCGACGCTCTTGCTGTCATTTGCCATCCAG----------------TTTA---CTTCTCTTACTCTGATTATTGTCATTAAGA----------------------TTTATTTCAC--------------TTGTTG---AAAAGTAT---------ACTCGACATTTTATTACCGTAACTT------TTTGTTGAatgaatagtttt-------gaaat-------------------accagaaaatgaattgaaactgTTATcacgaaagaagaa-aatttaatGACGT-A--tgatttaaatttttcgactG-TTTCGGGCGCGTCCTGGCAATTGTAACATGTGAACGGAAGTGAT-TTCATT-----GATAGCGAACGAAG-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3075272 384 +  4147112 c----aaaatggta---------acttttttttttcataa--tctcGGATAGGAATAACCTTATGCTGTGATTGTTCCAAT------ATCTTAAAAGCATATCTTTGTCCCTCTCGACGCTCGTGCTGTCATTTGCCATCCCG----------------TTCA---TTTTGCTTATATCAATTATTGTCATTTATATTA------------------CTTTGTTTCac--------------ttgttgagaaaaaatat------agaattcCGTTTATTGTTGGCCTGACCT------TCAGCGCaatgaatagttttt-----cgaaatgttaagg----------aagcaaaaaattaaatt----ttcttaTCAGGA------AG-ACTCTCTTGacgtca--tttttcgaattcttcaacTG-TTTTGGGCGCGGTTTGGTAGTTTGCCCATGTGAACGGAAGTGAT-TTCATA-----GATTGTGAATAGAACCGAC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   205621 7788 +   591668 I

a score=-15246.000000
s ce10.chrX              4821828 127 + 17718866 -------------------GGTTCAGC---ACTTTTTGATAATTTTTAGAGTGCGGTGAAAGAAAAATTTGTATTATAATAGGAAGTCAAAAAAATTGGGTAACAATTTTTAGTGAACATTTGTTTCTAAAAAAAGTTTTTTGAAAGAA
s caeRem4.Crem_Contig0   1716248  77 -  4500979 ----------------------TTTGC---ATTTTAtcagaatt----------------------attttgaat--------aatctcttaatattggaaaataaacTT------GGATTTACTTCTAGATAAAGGT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48912  58 -   201088 -----------------CGAGAAAAGC---TCTTTTTGATCGTT---------------------------TGAT--------AATTC---------------TGTTTGT------GAATTTAGTTCCTGAACA---------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3075656 107 +  4147112 TCCAGGTATAAGGCGTTCAAGTTAAGCAGATTACATTGCAGGTT----------------------AGCGGTGatataaaa--aattcattgaaataaaCACATGATTGT------ACAAacaactgaagaagaaaa------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   205621 7788 +   591668 I
e cb4.chrX              10155451 133 + 21540570 I

a score=-70619.000000
s ce10.chrX              4821955 271 + 17718866 -----------------------------GTTCAACATG-AGTTGCTCCGATGTTGTTTAAAACCAATCATATGGCGCCAAAAATACCATATCACAGTTAAACTTTTCCAGAATTTTTTTTTCAGTGACAGGCAACAAGTGGCAATTACTGAGGTTTTGTCACTttttgagaaaactacagcactgtcgcatgttcgattctctacaatgtttg---aatattatcgttcggaacataattaaaccgtaaaaattgaaggaatttttttt------------------g-attgatgac---tttcaaaaaagcggaaaaa-------------------------------------------cggag------
s cb4.chrX              10155584 299 + 21540570 ATTCAATAGAAAAGTTCCTCTAATAGATGGT--AACCTCTGATGgaaaaaactttattcaaaataaattcttcaaaatcaacaat------ttccGTGTAAA----CTCAACATTTT-----CGGTGTAATGTTCC---TGAGCATTTCCGTTTCCTAAAAAACTGTTGAGACACAT----------------------TTTGCACAAAAGTTGCACAA----ACAATTTAGAg---aattttgcacaaaaaatttagagaaattgataa------------------atttctatgaa---ttttaaACGAG------AATTTGCCgcatttttcgattaaaattttctacaaaaaattgcCGGTAAGATGGAA
i cb4.chrX              I 133 I 35
s caeRem4.Crem_Contig0   1716325 114 -  4500979 ----------------------------AGT--AACATC--------ACAATTTTATC---AATAACTT--------TTAGAAAT------TCGCAAGCaaa------------------------------------------------------------------------------------------------------acaaaatctg---aa----ataat---------------------gaaacttTAGGAGgctgaaat------------------a-----atgaa---actcataaaag------aa-------------------------------------------atgaaatgaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     48970 130 -   201088 ----------------------------------------GTTTGgtgcaaa--------aaaaaaattagttgcatatgtaaaa-------------aaaa----tccaggattga--------------------------------------------------tagaagaaataaa-------------------tcaaTA----GGCTGTTCAA------------------------------TCAATTTCTGGAAGATggctt------------------a-ttttttcag---attcataaAAC------AA-------------------------------------------TTAAG------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3075763 201 +  4147112 ----------------------------agt--gaagtt-GTCAGATAAAAAACAAGCGCAAACAAATGAGTTATGTTTTGAGAA------GCTAGGGAGAA----TGTGAAAATGA-----CAACGGA--------------------------TTacaaaacatttaaaaaaaacgaa-------------------tcaatataagagtttttgaa------aat---------------------gaaatttcttgaaCATCAGTTAGCCAGAAATTGGTGTACA-TTGGTTAGGTTTGTTCTTGAAAT------AA-------------------------------------------CTGCG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   205621 7788 +   591668 I

a score=-2824.000000
s ce10.chrX              4822226 12 + 17718866 atttttccactt---
s caeRem4.Crem_Contig0   1716439  7 -  4500979 -----tccAACT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49100  9 -   201088 ------ACAGCTTGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3075964  9 +  4147112 ------ATTGTTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   205621 7788 +   591668 I
e cb4.chrX              10155883 35 + 21540570 I

a score=-27657.000000
s ce10.chrX              4822238  87 + 17718866 ttGTTTCAGAGCAATTTCCTTTAT-----------------TGGCGCTACTCCACTGATTACCTTACACTAATTAACCCACTCACAGC----------------------------------ATTTTCAGGCCTGAAA
s cb4.chrX              10155918 128 + 21540570 TCTTCTAAGACAAATTTCACTTGTTGATTACTACTGTTCCATGAtattactttg-aaaatacaGTAGCCAA-AAAACGGTTAGCTCGAAATTGTCAGTTTCAGaccaaatcaaatcaaaaactgtcctaa--------
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1716446  19 -  4500979 ----------------------------------------------TTTCTGTG-GAA----------------------------------------------------------------TTTTTCAA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49109  46 -   201088 -------------------------------------ATTCCGGAAACAGTT---CAAATAATGTCGCCTA-Tagac---------------------------------------------tttttcaatt------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3075973  56 +  4147112 -----------------------------------------TGGaagttttttg-cagtttctgtTGAATagtaaactcttt----------------------------------------tttttcaagtcaagTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   205621 7788 +   591668 I

a score=108419.000000
s ce10.chrX              4822325 321 + 17718866 AATCGGAAATTA----GAAAGCAATAAAAT-------------------CTGTCTTCCTTTCAATAAATGTGACTAAAAAGAGCATTTCATTGCAAATTGTGATAACACTGTTGGTTTAT--------CACTTGGGAGTCTTAACTGGCAATATCATTTTGAAATGCCGTTTTCAGGGCGTGCCGGT-TTATACCTTTGGAG--TTGA--AAACGCACAAAAATTGATAATTT---------TCAACTGCGTTCTAACTTCTAT----------------TTGGTTTAAATGTTGTG-----ATTGTTCA----------ATATTTT------TTTCT-------------------------------------GCATTTACC-------TTGATTTAAAG-AATCATTTTAG-----------TTTTCCGTAATTTTTCAGT-ATGAAACTCAAATTT
s cb4.chrX              10156046 330 + 21540570 --tcaaaaactg----aaaagctataaaaa-------------------CGGCTCTTCTCCTC-------CATCAGAAAAGAGCATTTCCCTGCAATTTGCGATAAGAGTGTTGGTTTATGACTGGACCGCTAGCGAGTATTAACTGGCAATATCATTTCAAAATGCCTTTTTCAGGGCGTGCCGTTTTTATACTTTTGGAG--TTGAGTGTCATCGACTAAATTGATAAATT--------CTTTACACCGTTCTTACTTCAGt----------------ttacct----ttcttttttgagttttttcgacttgctcaattttttctttgttattgc-------------------------------------cttttgtttgattatatggaattttga-----------------------ttttc----acacACCAGTT----GTCACAAATTT
i cb4.chrX              C 0 M 136
s caeRem4.Crem_Contig0   1716465 322 -  4500979 --TCGGAAATCG----AAGCGCAATAAAAT-------------------TTGTTCTCCCCTTAGTAGAAGTGTTTAAAAAGAGCATTtcattgcaatttttgataagagTATTGGTTTATGACTGGACCGCTTGGGAGTATTAACTGGcaatatcattttcaaatgC--TTTTCAGGGCGTGCCGTTTTTATACTTTTGGAG-TTTGAGTGTC----ACcaatttgataaatt---------tctaCACCGTTCTAACTTcagt----------------ttactt----tttttct-----gtttatcg----------TTCTTTTCCcatcatttt-------------------------------------ttgctgttc-------tgaaattccaa-cA--AGTGTAT-----------TTGTC----TTGTTTCAGTGATGAATCTCAAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49155 292 -   201088 --ttagaagCTG----AAAAGCAATAAAAA-------------------CTGCTCTTCACTCATCGCAATTGACTAAATGGAGCATTTCATTGCATATTGTGATAAGAGTATTGGTTTATGACTGGACCGCTAGCGAGTATTAACTGgcaatatcattttcaaatgc--CTTTCAGGGCGTGTCGTTTTTATACTTTTGGAGTTTTGA---------------CTGATAAATT---------TCTTCTCCGTTCTaact---------------------tcattc----attttct-----atttatcg----------ttttttt------attct-------------------------------------acaTGTTTG-------TCAGTTTCCAT-AA--GTTATAT------------------------TTCAGTGATGACACTCAAACTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3076029 382 +  4147112 GATCGGAAACAA----GAAGGCCATAAAAA-------------------CTGCTTTTCATTCATTAGAATTGACTAAAAAGAGCATTTCATTGCAAATTGTGATAACACTATTGGTTTATGACTGGACCGCTAGAGAGTATTAACAGGcaatatcattttgaaatgc--cTTTCAGGGCGTGCCGTTGTTATacttttggagttttca--aac----GCCAATTTGATAAATT---------TCTTCTCCGTTCTAACTTCACTTGGTTTTTTATATCGATCATTT----ATTTATG-----atttacct----------ttttttt----tcattctgtttcacaactttcttttctcaatcaaaagcgtttgaataattttt-------tgactttcaatGAA--AGtatatttcaataaaaattatc------gattCAGTGATGAAACTCAAACTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   374702 336 -   591668 AAACGGAAATTAAGACAAATGCAATAAAATTATGTTACCTCAGCCCCTCCCTTTTCCTCCTCATTAGAAATGACTAAAGAGAGCATTTCATTGCAGTTGGTGATAACACTATTAGTTTATCAATGAACCGCTAGTGAGCATT-ACCGGCAATATTATTTC-AGACGC--TTTTCAGGGCGTGCCTTT-CTATACTTTTGGCG--TCAGTTACCTctgataattttaaaaaactctgTCTTTCTCTAC----TTTTAACTGCACA----------------CGGctt----tgttccg------------g----------ttttttcaaaactttttt-------------------------------------atttgtttc-------taggtcttgtt-----------------------tctcc----tttttgCAGCCATGACTTTCAAACTT
i caeJap4.Scaffold17934 n 7788 C 0

a score=9550.000000
s ce10.chrX              4822646 17 + 17718866 CTTCTGGGTCTTCTTTT
s caeRem4.Crem_Contig0   1716787 17 -  4500979 CTTCTCGGTCTCCTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49447 17 -   201088 CTACTTGGTCTCCTTTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3076411 17 +  4147112 CTACTTGGTCTCCTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375038 17 -   591668 CTTATAAGTCTCTTCTT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10156376 136 + 21540570 M

a score=23635.000000
s ce10.chrX              4822663 74 + 17718866 CATTTGTTGGA-GATCAG--CCGCAACAGAAGAATATACAAATCATTGGC---TTACTGAAGACACTGGTAAAGCC---GCAA
s cb4.chrX              10156513 44 + 21540570 ---------------------------------------AAATCATTGGAGGGCGACGGAAGACGTTGGTGAGACACCTGAAA
i cb4.chrX              M 136 I 4
s caeRem4.Crem_Contig0   1716804 77 -  4500979 CATTGTTTGGA-GATCGA--CGTCAGCGGAAGAATACACGAATCACTGGAGAGCAACTGAAGACGTTGGTAGGATA---AAGA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409     49464 77 -   201088 CATTGTTTGGA-GATCCA--CGTCGGCGGAGGAATATACAAATCACTGGCGGGCGACAGAAGACGTTGGTAAGATA---AGAA
i caeSp111.Scaffold409  C 0 I 10
s caePb3.Scfld02_0       3076428 75 +  4147112 CGTTGTTTGGA-GATCAA--CGACAGGAAAGGAATATACTAATCACTATAGGGCGACAGAAGACATTAGTGAGATA---AC--
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   375055 76 -   591668 CATTGTTTGGAGGATCAGCTCGGCAGAAGATGAATACATAAACCATTGGT---TAATAGATGATGCTAGTAAGTCT---CTA-
i caeJap4.Scaffold17934 C 0 C 0

a score=-4481.000000
s ce10.chrX              4822737 13 + 17718866 --------ATTTCAAATTCAC
s cb4.chrX              10156561 13 + 21540570 --------GTTTAAAACACAC
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1716885 13 -  4500979 --------GCGTTGGTTCCGT
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       3076510  6 +  4147112 --------ATTCTG-------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   375131 19 -   591668 TTTTCTAGTTTCTGAGCGC--
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     49541 10 -   201088 I

a score=70967.000000
s ce10.chrX              4822750 137 + 17718866 TGATAAATTTTAAT--AATTTCAGCAAGCGTTCAGTTCTGCTCACATGACGGATTTCTGAAAGATGGATCT---TGCGTTTGTACTGCAGATTATAATTCGAATTCTTGTTTGAAACGAAAATGCAGAAATTTTGGATTCGA
s cb4.chrX              10156574 135 + 21540570 -aataaactcaaa---atttttagccaaCGTTCAGTTTTGTTCACATGACAGTTACAACAAAGACGGTTCA---TGTGTATGTGATGTTGACTACACGGGTAACTTTTGTTTGAATCGAAAATGTCGAAGCTTTGGATTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1716898 138 -  4500979 -GATGACTAACaatccattttcagcaaatgtTGAATTCTGTTCACATGAcagttttaaaaaaga---ttcaaattgTATTTGTAATGTTGACTACAGCGGTAACTTCTGTCTGAACAGAAAATGTCGCAACTTTGGTTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49551 134 -   201088 AAGTCGGAATTAAT--ATTTACAGCCAATGCTGAATTTTGCTCCCACGACGGTTTCAAGACTGA---GGCA---TGTAAATGTAATGTGGATTACACCGGAAATTTCTGTCTGAATCGAAAATGTAGAAACTTTGGATACAA
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3076516 133 +  4147112 GCGTAAACTTTGAT---TTTACAGCCAATGTCGAGTTTTGTTCTCATGACAGTTTTAATAATGG---ATCG---TGTATATGTGATGTTGATTACAATGGAAACTTTTGTCTGAACCGGAAATGCAGAAATTTTGGATACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375150 133 -   591668 -TACAAATTTC-----ATATTCAGACGCGGTAACATTTTGCTCTCATGACAGTTTCATGAACGGCACGTCA---TGTGTTTGCAATCCCGATTACAATGGCAATTTCTGCTTAAATCGAAAATGTCGCAACTTTGGAATGGA
i caeJap4.Scaffold17934 C 0 I 43

a score=-2140.000000
s ce10.chrX              4822887 28 + 17718866 CGGCCAATCATT------CTCAAGCAA---TAAAGTC
s cb4.chrX              10156709 31 + 21540570 TGGATACCTGCCAAAGAATCCGGT------AAAAGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717036 25 -  4500979 TGGACAACttct------tcaaac------aaaaaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49685 31 -   201088 TGGACAGGGTTT------CCCCACTGGTGCAAAAGTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3076649 31 +  4147112 CGGCCAAAGCTT------CCCAACAGGTTTCAAAGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   375283 43 -   591668 I

a score=37876.000000
s ce10.chrX              4822915 53 + 17718866 GATCGGTGCATTTGCCCTCCAGGGTTTTTAGGTCGCAATTGCGAGCCAGGTAA-
s cb4.chrX              10156740 51 + 21540570 GATCGTTGTATTTGCCCACCAGGATTTCTAGGAAGAAATTGTGAACCAGGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717061 53 -  4500979 gacCGCTGCATATGTCCTCCCGGATTTCTTGGAAGGAACTGTGAACCAggtta-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     49716 51 -   201088 GATCGGTGTATCTGCCCGCCTGGATTCTTGGGTCGGAACTGTGAACCAGGT---
i caeSp111.Scaffold409  C 0 I 11
s caePb3.Scfld02_0       3076680 51 +  4147112 GATAGGTGCATATGTCCCCCAGGATTTCTCGGACGCAATTGTGAACCAGGT---
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17934   375326 52 -   591668 GACAGATGCATTTGTCCGCCTGGTTTCCTCGGTCGAAACTGCGAACCTGGT--A
i caeJap4.Scaffold17934 I 43 C 0

a score=0.000000
s ce10.chrX              4822968 37 + 17718866 TTAAAAGCCACGTTTTATTATTAGCTTGAAATATGAT
e caePb3.Scfld02_0       3076731 19 +  4147112 I
e caeJap4.Scaffold17934   375378  0 -   591668 C
e cb4.chrX              10156791  0 + 21540570 C
e caeSp111.Scaffold409     49767 11 -   201088 I
e caeRem4.Crem_Contig0   1717114  3 -  4500979 I

a score=-6973.000000
s ce10.chrX              4823005 100 + 17718866 AGTCAAAGTTTAAAAAATTGTGTAGCTGAAAAAAAGTGGTATTTGACAGAAAATAGTTTATTCGACATTTTATTTGAAATTAGATGTTCTGTTAATTTCC
s cb4.chrX              10156791  21 + 21540570 -----------------TTGTGT------------------------------------------------------------CTACGCTGGTGAttc--
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   375378  24 -   591668 -----------------------AGATGAATCAAGA-----------------------------------------------GGATACTAATA------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3076731  19 +  4147112 I
e caeSp111.Scaffold409     49767  11 -   201088 I
e caeRem4.Crem_Contig0   1717114   3 -  4500979 I

a score=0.000000
s ce10.chrX              4823105 3 + 17718866 CAA
e caePb3.Scfld02_0       3076731 19 +  4147112 I
e caeJap4.Scaffold17934   375402 0 -   591668 C
e cb4.chrX              10156812 0 + 21540570 C
e caeSp111.Scaffold409     49767 11 -   201088 I
e caeRem4.Crem_Contig0   1717114 3 -  4500979 I

a score=-19022.000000
s ce10.chrX              4823108 51 + 17718866 AAAGTTTTACAGAAAATTTCTTATCTGATTTTTTAAAATTTGAATTATATT
s cb4.chrX              10156812  2 + 21540570 --------------------------------tt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717117 16 -  4500979 --------------aaattttta----accttct-----------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold409     49778 12 -   201088 -----GCAATCCAGcag----------------------------------
i caeSp111.Scaffold409  I 11 C 0
s caePb3.Scfld02_0       3076750 23 +  4147112 Gaggtttcatcgaaaaatatatt----------------------------
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   375402  9 -   591668 -------AATTATGAA-----------------------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=555.000000
s ce10.chrX              4823159 6 + 17718866 TGTTTT
s caeJap4.Scaffold17934   375411 6 -   591668 TGTTTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3076773 0 +  4147112 C
e cb4.chrX              10156814 0 + 21540570 C
e caeSp111.Scaffold409     49790 0 -   201088 C
e caeRem4.Crem_Contig0   1717133 0 -  4500979 C

a score=-11513.000000
s ce10.chrX              4823165 118 + 17718866 GAACTAAGCGCGCACGTTAGTTTTTGCAAAAAAACTCATATGGTTTTCTTCAGTAAACTTTCCAGGATTGCATTTTTAAAGTTGAATTTTCATGATAATGTTCACATTATTTTT--------ATTA
s cb4.chrX              10156814  19 + 21540570 --------------------tgttttgaa---------------------------------------------------------------------------aaatgtgttt------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717133  19 -  4500979 --------------------tctctcaaa---------------------------------------------------------------------------catctttttt------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     49790  32 -   201088 -----------------tagtttttgaaa-------------------------------------------------------------------------tgaatcaattttcagtatcT----
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3076773   0 +  4147112 C
e caeJap4.Scaffold17934   375417   0 -   591668 C

a score=85372.000000
s ce10.chrX              4823283 191 + 17718866 CAGTGAAATGTGTTCCTGGTTCAAATCAAGCGTACTCCTCATCAAATAGTGAAAAATCAATAAGTCTTCTAGCCTCATTTAATACGAAAATGGCAGAAACATGGCAAACTGGAA---ATATCGGAAACCTTTTTTGCGAAAAAGAAGGTTATTGGAGAAGTTTTAACTACAACTACGATAACGCAGGCTATACA
s cb4.chrX              10156833 191 + 21540570 tagtGTCCTGTGTGTCCGGAAAGAGCCAAGTTTACTCaagtttgaaaactgaaaaaaccaTTTCTCTACTTGCTTCATACAAcgtaaaattgcaaaaaatctgggaaaatGGAG---ATATCGGACAATTGATTTGCAACGAAACTGACTACGCAAGAAACTTCAATTACAATTATGAGAATGCCACTCTTTAC
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig0   1717152 191 -  4500979 cagtatctTGCGTTCCTGGTAAAGATCAAGTGTACTCAACgtccaaaaatgagaaaaccaTTTCTTTGCTGGCTTCGTTCAATACGAAATTAGAAGAAACATGGAAAACTGGAG---ACATTGGTCAAGTTATTTGCAGCAAGGAGGATTATGGAAGGAATTTTAACTACAATTATGAAAATGCACAGCTTTTC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     49822 186 -   201088 --------TGTGTTCCGGGAAATAATCAAGTGTATACcagttcgaaaaatgaaaaatcgatttcaaTCCTGGTATCGTATAACTCCAAAATGGCAGAAACGTGGGGAACAAATACAGACATTGGGCAACTCATTTGCAACAAGGAAAATTATACAAGAAGTTTCAACTACAACtatgaaaatgcaaattatAAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3076773 191 +  4147112 cagTTTCGTGTGTTCCCGGAAAAGATCAACTGTATACAAGTTTGCCAAACGAAAAATCTATTTCACTTCTTGTAACATACAATAcaaaaatggctgaaacttggaaaaccGGGA---ATATTGGAGATCTTGTTTGCAATAAAACATCCTATTGGAGGAGTTTCAATTACAATTATGAAAATATCAACTATAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375417 185 -   591668 TAGTGAAATGTGTGAATGGTGCAAACCAAATTTACTCTAGTCTGccaaacgagaaaaaaatctCTATTTTCGCTTCGTACAATGAGCATTTGGTGAATGCTTGGAAATTCGGAG---ACATTGGAGAATTGGTTTGCAATTACACAGGCTATTGGAGAACTTTCAATTATAACACAGGAA--GCAAGTTA----
i caeJap4.Scaffold17934 C 0 C 0

a score=-19067.000000
s ce10.chrX              4823474 60 + 17718866 TCGGTTAG-----TCTAATAAAA---TACAATTTTAATGTCACAACTTTATAA------------TTTCAGTCA--CCATCT
s caeRem4.Crem_Contig0   1717344 52 -  4500979 -CAGTATG---Tgacaatttgaa---gttttttttcaaat-----ttttaag-------------tttcagaaa---aat--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     50008 57 -   201088 GCcgtaagaaaagaaaaactaa------tattttcaatct-----tGTTAATA------------TTACAGAAATCTGAT--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3076964 52 +  4147112 ATGGTTCG------------------------TTCGATGTC-TGATGTTAAGACACAAAGACAAGTTACAGAAA---AAC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375602 51 -   591668 TTGGTAAGCTTTGAGATATAAAACATGATTTTCTGAACTT-----CGTTGAAG------------TTT--------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10157024 59 + 21540570 I

a score=31907.000000
s ce10.chrX              4823534 179 + 17718866 ---------GAAAATACTACTACTTGTACTGAAAAAGTTCAAGATTATTTGACCCCAGACCCGTGCCAAAATGATTA---------------CGGAAATGCAACTACTTGTGGACAGCTCGATATTAACAATCTTAATTCTCTTGTTCAAAACTCTCCCCCAAATTCAATAGTAAG-------TTCTAC-------ATTGAAATTCGAATTTTCAAT
s cb4.chrX              10157083 169 + 21540570 ---------gaaaatagtTTATCTTGTGTCGCCAAGCTCAACCAATACTTAACTGCTGACAGTTGTACAGACGATGA---------------TGAGAAACCAATTGCTTGCATTCCATTggatatcaacaatttgaaCTCAATTGTTCAATATTCACCTCCAAATTCAATTGTTAG-------TTATTc---------ttgttttggaa--------
i cb4.chrX              I 59 I 358
s caeRem4.Crem_Contig0   1717396 178 -  4500979 ---------gagaacgcAACAGAATGCTATAGGAAAGTGACACAATTTCTAACTCCTGATCCTTGTCTAGACGACTA---------------TAATAATCCAGTACCATGCACTCAGTTAGATATCAATAATTTGAACTCTCTAGTTCAAAACTCCCCTCCAAATTCAATTGTGAG-------TCACACCACTTCAAATCGTTTTCCAA--------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     50065 179 -   201088 ---------GAAACCaaggaaaaatgtttctccAACGTAGGAAATTATTTGAGTGTTGATACATGTCTGGATGACGA---------------CAACAAACCAATCCCTTGCACACAATTGGATATCGCTAATCTTGATTCTCTCGTACAGAACTCTCCTCCAAATTCCATCGTATG-----Caattttc---------tggtttcaaaattcaagac
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3077016 174 +  4147112 ---------GAATCAGCTGATGACTGTATTACCCGAGTCAATAATATTTTGGATCCTGATCCATGTCTAGAGGACGA---------------TAACAACCCAATTCCTTGTCAAAAGCTGAACGTAGTTAATCTGAACACTCTTGTTCAAAATTCCCCACCAAACTCTATTGTATG------ATTTCTC---------TGCTT----AATTGCTAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375653 208 -   591668 AATGCTACCGATTCATATGAAACGTGCAAGACGGAAGTAGAGAAATGGCGGGTCCCCGACACCTGCTCTGATGATAATGTCAACTCCGAAAGTGGTAAACCCTTTTCTTGCCAAGAACTCGATATGGACAGTTTGAAGGAAATTATCTTGGATTCTCCACCAAACTCAATTGTGAGTcaggcttttttt---------ttctactgcAATAACCAAG
i caeJap4.Scaffold17934 C 0 C 0

a score=15823.000000
s ce10.chrX              4823713 37 + 17718866 TAATACCTCAC----TAGGTGTTTGTTGTGACCAACATGGG
s cb4.chrX              10157610 37 + 21540570 TACcaactttt----caggttttcgtGGTTACCAATATGGC
i cb4.chrX              I 358 C 0
s caeRem4.Crem_Contig0   1717576 37 -  4500979 AAAGATGATTA----CAGATTTTCGTTGTTACAAACATGGG
i caeRem4.Crem_Contig0  I 2 I 15
s caeSp111.Scaffold409     50244 36 -   201088 GAAGACTTTTT-----AGGTTTTTGTTCTCACAAACATGGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3077190 41 +  4147112 ACATAACGTTTACTCCAGATTTTCGTCGTCACTAACATGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375861 31 -   591668 ------CACTA----CAGGTTTTTGTCGTTACCAATATGAA
i caeJap4.Scaffold17934 C 0 C 0

a score=-7109.000000
s ce10.chrX              4823750 15 + 17718866 ---------------TGTTATTCCGAGCAG
s cb4.chrX              10157647  9 + 21540570 ---------------TGTCAGTTC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     50280 11 -   201088 ----------------ATTGGTTTCAA---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3077231  6 +  4147112 ----------------GCTAGT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375892 23 -   591668 TGTTAGCAAATCGCAGGTTGATG-------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1717613 15 -  4500979 I

a score=28412.000000
s ce10.chrX              4823765 60 + 17718866 TGCAACAGACGCGATGGC------TGAAGATATTATCGCTACTTCAATTGCACGAAGAATTCAGGT
s cb4.chrX              10157656 60 + 21540570 TATAACCGGCGATATTGT------TGAAGATATCATTGCTACTTCGATTGCCCGCAGAATTCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717628 60 -  4500979 TGAAACTGCTGATCTGTC------TGAAGAAATAATAGCGACTTCCATCGCGAGAAGAATTCAGGT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold409     50291 58 -   201088 --CACCAGACTCCGTGGC------TGAAAATATCATCGCAACGTCGATCGCCAGACGAATTCAGGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3077237 63 +  4147112 ---AACTGACACTGCTGCACTGAAAGAAAGTATTATCGCAACTTCAATCGCCAGACGAATccaagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375915 52 -   591668 GGCCACAGAC--------------AGAGAGCATCATAGCTACAGCTATTGCTAGGAGGATTcaggt
i caeJap4.Scaffold17934 C 0 C 0

a score=302.000000
s ce10.chrX              4823825 2 + 17718866 TT
s caeRem4.Crem_Contig0   1717688 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   375967 2 -   591668 tt
i caeJap4.Scaffold17934 C 0 I 25
e caePb3.Scfld02_0       3077300 0 +  4147112 C
e cb4.chrX              10157716 0 + 21540570 C
e caeSp111.Scaffold409     50349 0 -   201088 C

a score=311.000000
s ce10.chrX              4823827 2 + 17718866 GT
s caeRem4.Crem_Contig0   1717690 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold409     50349 2 -   201088 AT
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3077300 0 +  4147112 C
e caeJap4.Scaffold17934   375969 25 -   591668 I
e cb4.chrX              10157716 0 + 21540570 C

a score=0.000000
s ce10.chrX              4823829 9 + 17718866 ATCTAGTTG
e caePb3.Scfld02_0       3077300 0 +  4147112 C
e caeJap4.Scaffold17934   375969 25 -   591668 I
e cb4.chrX              10157716 0 + 21540570 C
e caeSp111.Scaffold409     50351 0 -   201088 C
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=-2809.000000
s ce10.chrX              4823838 84 + 17718866 TTTTTTTTTGTTGATC--CATAAACGCTATAAAAATGATTAAAAATATTTTTCAGTTGACAATTTTTGAATAGAAAAAAGGACAAC
s caeSp111.Scaffold409     50351 12 -   201088 -------------------------------------ATTGGAAATATC-------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   213409 84 +   591668 TTATTTCAAGTTGCTCGACATGAATGTTATCCATATCA--AGAACTGTGCCTAAATTACCAATTTTTGGATATAAAAAGGGAAAAC
i caeJap4.Scaffold17934 I 7788 I 7473
e caePb3.Scfld02_0       3077300  0 +  4147112 C
e cb4.chrX              10157716  0 + 21540570 C
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=0.000000
s ce10.chrX              4823922 9 + 17718866 TGATACAAT
e caePb3.Scfld02_0       3077300 0 +  4147112 C
e caeJap4.Scaffold17934   213493 7473 +   591668 I
e cb4.chrX              10157716 0 + 21540570 C
e caeSp111.Scaffold409     50363 0 -   201088 C
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=683.000000
s ce10.chrX              4823931 27 + 17718866 TTAAAAAGTTGaatttaattaaattta
s caeSp111.Scaffold409     50363 10 -   201088 -----------------ATGAAATCTA
i caeSp111.Scaffold409  C 0 I 15
s caeJap4.Scaffold17934   375994 25 -   591668 TTGGAAAGCGGCAGT--GTAAAATTTA
i caeJap4.Scaffold17934 I 25 C 0
e caePb3.Scfld02_0       3077300  0 +  4147112 C
e cb4.chrX              10157716  0 + 21540570 C
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=-580.000000
s ce10.chrX              4823958 10 + 17718866 aattgtatta
s caeJap4.Scaffold17934   376019  2 -   591668 GA--------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3077300  0 +  4147112 C
e cb4.chrX              10157716  0 + 21540570 C
e caeSp111.Scaffold409     50373 15 -   201088 I
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=-10071.000000
s ce10.chrX              4823968 209 + 17718866 -taatttttttttaaatttaaattGTACTACAAT---TTAAATTGGCAAAACTTAGTTTGGAATGCTGCATTTTAGCAAATTTTGATTTTTTTTTCAAAGTTGGTAGCTGAAAATTACTTTTCTGACTTACTTACAACTTATTACGTAAGTATTTGAGTCTGTGCCAGAACAATTAAAATTTAAATTGGTTGTAGCCGATTTGAAAATTTTGG
s caePb3.Scfld02_0       3077300  64 +  4147112 -aaatttttttt-----------------------------------------------------ctgcatgcTAAC------------------TAAAGT--------------------------TTATTTA-------------------TTGGATGCCTTCCAGATCAA-----------------TGTACTCG---------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   376021  94 -   591668 TTAACGTTATTG-----------TGTACAATAATACATTACCTTTG-------------------CTTCTTATCGGCGAC---------------CCAAGT---------------------TTGACGTacttg-------------------------------caaaaaat-----------------tgcatcCG-----CTACTCTTGG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10157716   0 + 21540570 C
e caeSp111.Scaffold409     50373  15 -   201088 I
e caeRem4.Crem_Contig0   1717692  30 -  4500979 I

a score=-5597.000000
s ce10.chrX              4824177 36 + 17718866 ATTATCACCCACATTTGGTCTATCCAATGGAAAATT
s cb4.chrX              10157716 34 + 21540570 ACAATGTCCCatatttcagaagttcaa--gttattt
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0       3077367  5 +  4147112 ACAAT-------------------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   376115 19 -   591668 ---------AACTTTTGTTCTGCCTAGT--------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     50373 15 -   201088 I
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=0.000000
s ce10.chrX              4824213 1 + 17718866 T
e caePb3.Scfld02_0       3077372 0 +  4147112 C
e caeJap4.Scaffold17934   376134 0 -   591668 C
e cb4.chrX              10157750 2 + 21540570 I
e caeSp111.Scaffold409     50373 15 -   201088 I
e caeRem4.Crem_Contig0   1717692 30 -  4500979 I

a score=26411.000000
s ce10.chrX              4824214 99 + 17718866 TTTAGATCAACGTGATCGTCTACAACAACACGGATTTTTTGTCAAGCGATAGTGGATTGGCATACTTGAGTAACATTACTTCTGCAACGTTTGGAACCT
s cb4.chrX              10157752 99 + 21540570 tgcagatcaATGTTCTTGTCTACAACAACACCGGATTCCAGGCTGATGACCCGAGTCTGGCAACTCTGAGTAACATTGCAGCTGCTACTCTCGGTCAAT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1717722 99 -  4500979 TTCAGATCAACGTTCTCGTCTACAATAACACTGGATTTCTTGCAAATGACCCAGGATTAACTTATTTGAGTGACATTGCATCAGCCACTCTTGGAACAT
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold409     50388 99 -   201088 CTCAGATCAACGTACTCGTTTACAATAACACAGGATTCTTGGCTACTGATCCTGGTTTAGCCTATTTGAACAAGATTGCAACAGCAACATTTGGAACAT
i caeSp111.Scaffold409  I 15 I 3
s caePb3.Scfld02_0       3077372 73 +  4147112 --------------------------AACACCGGATTCATGTCCGATGATCCTGGTCTTGCTTATTTAAGCGATATTGCATCAGCTACATTTGGTACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   376134 42 -   591668 -----ATCAA---------CCAAAATAAC--------------------------------------GAGCAGTACAGTGT-----ATGTTTCATacat
i caeJap4.Scaffold17934 C 0 C 0

a score=235.000000
s ce10.chrX              4824313 3 + 17718866 ACA
s cb4.chrX              10157851 3 + 21540570 ATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717821 3 -  4500979 TTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3077445 3 +  4147112 ATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   376176 3 -   591668 tta
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     50487 3 -   201088 I

a score=13332.000000
s ce10.chrX              4824316 44 + 17718866 -----TTCTTCCCAGCATAAAACCGACAAACGAGCAATATGACGTAACT
s cb4.chrX              10157854 44 + 21540570 -----TCTTGCCAAGTATCGAAAATGGCAATGAGCAATATGCAGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1717824 44 -  4500979 -----TCCTACCAAGTATCAAAGCTGTCAACGAACAATATGGAGTAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     50490 44 -   201088 -----TTCTTCCCAGCATCAAATCAAGTAATGAACAATATAATGTGAGT
i caeSp111.Scaffold409  I 3 I 7
s caePb3.Scfld02_0       3077448 44 +  4147112 -----TCCTTCCTAGTGTTAAGCCAGTTAATGAACAATACGATGTAAGT
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17934   376179 18 -   591668 ttctttttttcctgaaat-------------------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=-7915.000000
s ce10.chrX              4824360 20 + 17718866 AAAACTCCAAAAATATGAGC---
s cb4.chrX              10157898  8 + 21540570 ------------AAAGTAAT---
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1717868  8 -  4500979 ------------AGACGACT---
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold409     50541 14 -   201088 --AAC----AGTTTACCAAT---
i caeSp111.Scaffold409  I 7 I 2
s caeJap4.Scaffold17934   376197 13 -   591668 ----------gcCTTTGAATTAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3077492 24 +  4147112 I

a score=39886.000000
s ce10.chrX              4824380 154 + 17718866 CGTTATGTATG----CAATTT---AGATTGTGAACACTCTTCTCAAAAACTGGGTTTCCGGAATACAAGTGTCTACAGTATTTTCAGATAGCGTTAAAAACTTACCTGTCGATAATTCTTTGGATTTATTTGTAGCTGCTCAAACAAACTATGGTCAAGGT
s cb4.chrX              10157909 161 + 21540570 TAATACGgaataattgttttcaataGATTGTAAATGctcttttggaaaattgggatCAAGGCTATCAACCGACCAAAGTTTTCACAGGTGGAATCAAAACCTTACCTGTTGATACTTCAAAAGATATCTACGTGGCAGCTCAGTTGAGCTATGGACAAAGT
i cb4.chrX              I 3 I 30
s caeRem4.Crem_Contig0   1717883 156 -  4500979 TATTGTaaactgataattttc---agattgttagCACTCTTCTTGATAATTGGGACCAAGGATTCCAGTTATCCAACGTTTACACAAATGCCATACCAACCATGCCGGTCGATAACACACTTGATTTATTTGTGGCGGTACAAACCGAATATGGAGATG--
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409     50557 147 -   201088 TTTTGTGTA------ATTTTC---AGGTTGTGGACTCTCTGCTCAATAATTGGGATCAGGGAAATCAAGTTTCTTTAGTTCTATCAGATTCAGTCAAAGCGTTGCCAGTCGATAATTCTATTGATATGTATGTTGCTGCTCAACTCTATTATTCAA-----
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3077516 154 +  4147112 cTTCACATACT----CTTTTA---AGATTGTAAAAATACTTCTGGACAATTGGGATCAAGGAAACTTAGTTTCTGCTGTGTTTACcgatgaaaccaaaaatttaccAATGGACAATGCAGTAGATTACTATGTTGCTGCTCAAACTTATTACGGAGAGAGT
i caePb3.Scfld02_0      I 24 I 39
s caeJap4.Scaffold17934   376210 153 -   591668 -GTTGTTGATC----AATTCC---AGGTTGTGAGTTATTTGCTTGAGAATTGGAGCAATGATTTTAAGGTGTCAATCGTCTATTCAGATGATACTTTAGCTCTCCCTGTTGATCAGTCGTTGGAGTTATATGTTGCTGCACAAACAAACTTCAACCAAGgt
i caeJap4.Scaffold17934 C 0 C 0

a score=-123.000000
s ce10.chrX              4824534 1 + 17718866 A
s caeJap4.Scaffold17934   376363 1 -   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3077670 39 +  4147112 I
e cb4.chrX              10158070 30 + 21540570 I
e caeSp111.Scaffold409     50704 0 -   201088 C
e caeRem4.Crem_Contig0   1718039 0 -  4500979 C

a score=-3569.000000
s ce10.chrX              4824535 32 + 17718866 ---GCTCTCGTGTTCTTAGGTTTTTAATTTTCACA
s caeRem4.Crem_Contig0   1718039 29 -  4500979 -----GTTTGTTAATATGCCca-gcattttttgta
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     50704 29 -   201088 ------CTGGTGTGTATGGAAAGGTAGTTttcata
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   376364 34 -   591668 tttttgctcgttattGAAACAT-CTAGTgattaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3077670 39 +  4147112 I
e cb4.chrX              10158070 30 + 21540570 I

a score=68.000000
s ce10.chrX              4824567 9 + 17718866 TTTCCCTTT----
s cb4.chrX              10158100 9 + 21540570 tttacattt----
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   1718070 9 -  4500979 tttatattt----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409     50733 7 -   201088 --aatattt----
i caeSp111.Scaffold409  C 0 I 4
s caeJap4.Scaffold17934   376398 8 -   591668 -----attttgtt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3077670 39 +  4147112 I

a score=26330.000000
s ce10.chrX              4824576 76 + 17718866 TTTCAGACTTAACATTCAATACAAACAGTGCTCCA---GTGATTCGTCAAACTGATTTTTGGAAGCTTTACAAGTGAG-----T
s cb4.chrX              10158109 79 + 21540570 ttgcagACGCTGTTTTCAGTGTGGATTTACCGCCAACTGTTGTTCAAAAAACCGACTTCTGGAAACTTTATAAGTTCG-----T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1718079 77 -  4500979 c--aagATGCTATTTTTAACGTCAATCCTATGCCGTCAGTTGTGAGCAAAACCGATTTTTGGAAGCTTTACAAGTAAG-----T
i caeRem4.Crem_Contig0  C 0 I 1646
s caeSp111.Scaffold409     50744 73 -   201088 tttcagatttgacAATCAATGGGGAGGCCGATCTA------GTAACAAGTACAGATTTCTGGAAACTTTATAAGTAAG-----T
i caeSp111.Scaffold409  I 4 I 5
s caePb3.Scfld02_0       3077709 84 +  4147112 TTTCAGATTTGTCCTTCAATTTGGATCCCCAACCAATAGTTGTGAACAGCACtgatttctggaaactttaCAAGTAAGGAGCAT
i caePb3.Scfld02_0      I 39 I 5
s caeJap4.Scaffold17934   376406 76 -   591668 ttccagatGTCCAATTCAATACGAAAGTTTCTTCT---GTTATTAGCAAAACCGACTATTGGAAACTTTACAAGTGTG-----G
i caeJap4.Scaffold17934 C 0 C 0

a score=-9150.000000
s ce10.chrX              4824652 91 + 17718866 CAATGAAAAAAACATTGTTGAAATGCAAAATTATTTAAAGATTGTCGGCTGAAACATACGGCAACGTTTTGTCCATATCTGGACAGCTTCC-
s cb4.chrX              10158188 88 + 21540570 CTAATTAAAAGGAATAATTAAAAACAA--GCGACTTTTAGGTTGACTGCCGGATCGTCCACCCACA-GCTTTCAGCGTCTAACCAGACCTC-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     50822 83 -   201088 CTTgtagaatgaaatgaatgagtttta--------ttcagaataccAGCTGGATCTCTTGGTTCCACTCTTTCAGTTTCCGGACAGACAGC-
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3077798 77 +  4147112 ---------TGAAACAACTCaaacttg-----aatttcagaattactAGTGAATCTGTAGGACATATTCTGACTATCACTGGACAACTTCC-
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   376482 78 -   591668 -----CAATTTAACTGATTCGTAGCCAGAGTTGATTTCAGATTA-------GAAAATTTGCCACCAATTCTCCAGATTTCGAATA--TTGCG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1718156 1646 -  4500979 I

a score=95741.000000
s ce10.chrX              4824743 474 + 17718866 --AAACACACCAGTTTATGTGTATTCGTCAGGTGGTCTTATAGCATATTCAGCTTTCACAAGTGATGACGATAGAAACA---ATTCTGTTGTCGATTCTGCGTACAGTGTTTCTGTAATTGGT---A-------------CACTTTAAT--TATCAATCCTCGGTTACAATTTTAAATTTTATTCAGGCTCAAAGTATACTCTTGTTGTTCGTTTGGAATCTCAAGGTAAAGCCTTTGATAATGAAGTCGGAATGAAGTTCATTGGAACTTCCGGTTCAATTACATTGGGAGCAGACATCATATGTCGGATTGGT-TGTCAGTTCAATTATCAAGCATCTGCAACCTGCAATTCTGTTGGGGCGTCTGTCGCAACTGTAAG-TTTTTT------TTGACGAAATAGAAAATAT----AAACATTTGTT--TTCAGGTAGTCACCGCTGATAATCCTCGACGTTCAGTGTCTTTCCCTATTTATTGTGCAAGCTTAGCATATGCAAGTGAGT
s cb4.chrX              10158276 468 + 21540570 --TGACACGCCGATTATTGTTTATACCACCGGAGATCTCGTCGCTTATTCTGCTTTCACAAGTGATGAAAACAGAACTG---CAGATGTTGTTGATAGTGCATTCAGTGTTTCTGTCAATCGt---g-------------tgtttcgaa--aaataagt--CATTTGTAATTGTG---TTCATTCAGAAACATCTTACTCGATGGTGGTGAAGCTGGAATCTGAAAACGCTCCAGTAGACTACGAAGCAGGTTACAGAACAATCGGCAACCCGAGCTCAATTTCTCTTGACACA-ACATTCCATAATCGAGCCTTCTGTCAGTTTAATTTCATCGTCAAAGCCAATTGTAAGTCTGTCGGCGCATCTGTTGTTACTGTAag-tttcattttccaaaaatcacatttcta--------aaACATTTCAT--TTCAGATGATCACCGCGAACAA---TCGAAATTCGGTCTCCTTCCCCGTCTATTGTGCTAGTTTCAGCTATGCCAGTGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1719802 475 -  4500979 --AAACACACAAATTCTTGTCTATTCTTCTGGAGGTCTGACTGCTTACTCTGCGTTCACAAGTGATAAAACGGATGATGAATCAATGGTTGTGGATGCAGCGTACAGTATTTCTGTAAATGGT---TAGC----------CGTTTCAAATTTGAGTATT--AAATACTGATTTTC---TACTTTTAGGAACTGGATACCCTCTCGTTGTCCGATTTGAATCGGGTAACGCAGCGTTGGATTATGATGTAGGTTTCAGACAACTAGGATCATCGAACTCAATTACTCTTGGATCT-TCGTTTTCTAATCGATCGTACTGTCAGTTTAATTTTCAAGTTGATGCCACTTGCAATACAGTAGGTCCCTCTGTCGTTACGGTAAG-Atccac------aaaatgttttttttatttct---gatcGTATTAT--TATAGATCGTCACTCCAGACAA---CGCACGTTCAGTCTCGTTCCCAGTTTATTGTGCAAGCTATAACTACGCTAGTGAGT
i caeRem4.Crem_Contig0  I 1646 C 0
s caeSp111.Scaffold409     50905 469 -   201088 --TAATACTCCTGTCCTTGTTTACTCGTCCGGAGGTCTCAAAGCGTATTCTGCTTTCACCAGTGACGATGATGGCAACA---TCGAAGTAGTGGATGCTGCATACAGTGTATCTGTAGTTggtttgtaattt--------tttttcacg--taACTGTT-----TGTGCATGTTA---TTTTCTTAGGCACGTCATATTCTCTTGTGGTGCGACTTGAAAACGGGAATGCTGTTTATGACTCCAAAGACGGATTGAGAAGTTTTGGAACACCCAGCACAATTAAACTAGG--CT-CGTTTGTG-AATAGACCTGTGTGCCAGTTTAATTTTGCATTTGATGCCACCTGTACTTCGATTGGAGCCTCTGTTGTGACGGTACATTTTTAT------ACAAGCCATTAG--ATTTT----AACCGCCATAAGTTTCAGTTGGTGACAGCAGACAA---TCGTCGTTCCGTTTCTTTCCCAGCCTACTGTGCAAACTTCACTTATGCCAGTAAAC
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3077875 469 +  4147112 --CAATACACCTGTTCTTCTTTATTCTAGTGGAGGTCTCAAAGCATATTCTGCGTTTACCAGTGATGAGCCTGGAAATG---TTGATGTTGTTGACGCAGCTTACAGTATTTCTGTGATTGGT---GAATTTAGTGGAAATacatcaaa--taa---------------aaatga---gcattttagGAACACAATACTCTCTTGTCGTTCGGTTAGAGTCTGGAAACTCTGTTCTtgattttgacgaaaaattgagaagtatAGGAGCACCAAAAAGAATGACATTAGGAACC-AGTTTTTATAACAGATCAGTTTGTCAATTCAATTATCAGGTTGATGCAAACTGTAAAGATGTGGGAGCATCAATTGTTACGGTAAA--TTCAT------AGAATTTGTTTGTTActttttaaaacagttttga--ttcaGTTAGTTACCGGAGACAA---CCTTCGTTCTGTTTCATTCCCAGTTTATTGTGCTAGTTACAATTATGCCAGTAGGT
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17934   376560 462 -   591668 AATGGTACTCAGGCATTGGTTTATTCAAAGGGTGGATTAATAGCTTATTCCGCATTTACTAGCGACGAATCCCCATCAA---TTTCTTTATCCGATGCATCATACAGTGTTTCAGTTGAAGGT---A-------------ATATTGAAC--TTATTGTG--CATCACGAAAAGT----TAATTTTAGGAGCTTCCTACATATTAGTTTTTCGACTAGAGTCTCCCAACGGAGTTATTGAAGCagcaaatattcaaaaatcacGCGTTCAAACTAAGACACTTACTCTTGAAAAC-TTCTTCACAAACCGGTCTAGTTGCCAGTTCAATATTGGAGTAAATGCAATTTGTACCTCGGTCGGAGCTTCTATAGCAACAGTTTG--TTCAT------TTAAGCAATCTGAAATTGT----ATTTGCGTAA---TTCAGATTATTACT---AATGA---TATGCAATCTGTTTCTTTTCCAGTTTATTGTGCAAGTGCAGATTACGGAAGTTCGC
i caeJap4.Scaffold17934 C 0 I 9

a score=-1110.000000
s ce10.chrX              4825217 17 + 17718866 ATA--ACtttaaaaaatat-
s cb4.chrX              10158744 15 + 21540570 --G--ATTTCGGAAAACGT-
i cb4.chrX              C 0 I 138
s caeRem4.Crem_Contig0   1720277 17 -  4500979 --GTTATTCCAAACAAAAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     51377 17 -   201088 ATG--AGTtgtgagaaatt-
i caeSp111.Scaffold409  I 3 I 1
s caeJap4.Scaffold17934   377031 18 -   591668 ATA--ATtcttcaaacaatt
i caeJap4.Scaffold17934 I 9 C 0
e caePb3.Scfld02_0       3078344 31 +  4147112 I

a score=1272.000000
s ce10.chrX              4825234 3 + 17718866 ttt
s caeRem4.Crem_Contig0   1720294 3 -  4500979 TCT
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold409     51395 3 -   201088 ttt
i caeSp111.Scaffold409  I 1 C 0
s caeJap4.Scaffold17934   377049 3 -   591668 ttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3078344 31 +  4147112 I
e cb4.chrX              10158759 138 + 21540570 I

a score=-556.000000
s ce10.chrX              4825237 2 + 17718866 aa-
s caeSp111.Scaffold409     51398 2 -   201088 aa-
i caeSp111.Scaffold409  C 0 I 14
s caeJap4.Scaffold17934   377052 2 -   591668 -ac
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3078344 31 +  4147112 I
e cb4.chrX              10158759 138 + 21540570 I
e caeRem4.Crem_Contig0   1720297 16 -  4500979 I

a score=441.000000
s ce10.chrX              4825239 7 + 17718866 atatCAG
s caeJap4.Scaffold17934   377054 7 -   591668 aTTTCAG
i caeJap4.Scaffold17934 C 0 I 27
e caePb3.Scfld02_0       3078344 31 +  4147112 I
e cb4.chrX              10158759 138 + 21540570 I
e caeSp111.Scaffold409     51400 14 -   201088 I
e caeRem4.Crem_Contig0   1720297 16 -  4500979 I

a score=0.000000
s ce10.chrX              4825246 525 + 17718866  
e caePb3.Scfld02_0       3078344  31 +  4147112 I
e caeJap4.Scaffold17934   377061  27 -   591668 I
e cb4.chrX              10158759 138 + 21540570 I
e caeSp111.Scaffold409     51400  14 -   201088 I
e caeRem4.Crem_Contig0   1720297  16 -  4500979 I

a score=91.000000
s ce10.chrX              4825771 1 + 17718866 T
s caeRem4.Crem_Contig0   1720313 1 -  4500979 t
i caeRem4.Crem_Contig0  I 16 C 0
e caePb3.Scfld02_0       3078344 31 +  4147112 I
e caeJap4.Scaffold17934   377061 27 -   591668 I
e cb4.chrX              10158759 138 + 21540570 I
e caeSp111.Scaffold409     51400 14 -   201088 I

a score=851.000000
s ce10.chrX              4825772 5 + 17718866 TTTGC
s caeRem4.Crem_Contig0   1720314 5 -  4500979 tttgt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3078375 5 +  4147112 tttga
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold17934   377061 27 -   591668 I
e cb4.chrX              10158759 138 + 21540570 I
e caeSp111.Scaffold409     51400 14 -   201088 I

a score=5249.000000
s ce10.chrX              4825777 29 + 17718866 AGGCAGTAAATACAACAATATCTCGTCAG
s caeRem4.Crem_Contig0   1720319 29 -  4500979 AGGTAGAAAATACAACAACTTTGTTTCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     51414 29 -   201088 AGGTAACATTTACAACAACTTGCATGCTG
i caeSp111.Scaffold409  I 14 C 0
s caePb3.Scfld02_0       3078380 29 +  4147112 aggaAGCATATACAATAACTTTGATAATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   377061 27 -   591668 I
e cb4.chrX              10158759 138 + 21540570 I

a score=7816.000000
s ce10.chrX              4825806 42 + 17718866 AAACAGTCGGAATCGCCCATCTGGAACATAGACAATCCCTTG
s caeRem4.Crem_Contig0   1720348 42 -  4500979 AGGTAATGGAAATAAAGCATTTCGAGAGCAGTCAAACTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     51443 42 -   201088 AAACAGTGGAAATCACTCATTTGGAAACTGGTCAATCTTTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3078409 42 +  4147112 AAGTTGTGGACTTTGTCCATTTGCAACAAAAGCAATCAATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377088 42 -   591668 AAACTGTCGATATTtcttttattgaaaatcgaCAATCTTTGG
i caeJap4.Scaffold17934 I 27 I 36
e cb4.chrX              10158759 138 + 21540570 I

a score=-3920.000000
s ce10.chrX              4825848 40 + 17718866 CGAAAGGT-------------ACTAATAAGACTATACCAGTAGTCATGATAAA
s caeRem4.Crem_Contig0   1720390 33 -  4500979 CAAGAGGTAAGAATTATTCG-ATTAATTAAAT-------------------AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     51485 37 -   201088 CCTCAGGT--GAATATTTCA-ACGAAAACAACTG-------------ggaaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3078451 32 +  4147112 CAAGAGGT--GGGTTCTCTGTTCTAATATAAC-------------------AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   377130 36 -   591668 I
e cb4.chrX              10158759 138 + 21540570 I

a score=-3185.000000
s ce10.chrX              4825888 9 + 17718866 CACACTTTG
s caeRem4.Crem_Contig0   1720423 6 -  4500979 ATTATG---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     51522 9 -   201088 ttcatttaa
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3078483 9 +  4147112 AGCAATgta
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   377166 9 -   591668 CATAAATTG
i caeJap4.Scaffold17934 I 36 C 0
e cb4.chrX              10158759 138 + 21540570 I

a score=33187.000000
s ce10.chrX              4825897 86 + 17718866 -TTTTTTAGACTTCACGTG---TTCCAATGCGAGCCAAGAAACATTTGGACAAAGAAGTTTTGTTATTCTTGCTGAAAAC---ACAAAAGACA
s cb4.chrX              10158897 89 + 21540570 -ttttttagactttGCCTGTGGTTCTGACATTGCTCCCGAGAAAACAGGAGAACGCAGTTTCATTATTGTCGCTGAGAAT---AGCAATGACA
i cb4.chrX              I 138 C 0
s caeRem4.Crem_Contig0   1720430 92 -  4500979 -TTTTTTAGATATGGCATGCGGTGCTGAAATTGATCATGAAACATATGGAAAGCGTACTTTTGTGATAATTGCGGAAAATTCGAAGAATACCA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     51533 89 -   201088 -AATTGCAGACTTTACTTGCGGAACCGATATTGCACATGAAAAATATGGAGGTCGTAGCTATGTGATAATTGCGGAAAAC---AGCCAAGATC
i caeSp111.Scaffold409  I 2 I 3
s caePb3.Scfld02_0       3078494 89 +  4147112 -aatttcagattttgcttGCACCACTGATATTGGAGTTGAGGAATATGGAGGCCGCAGTTTTGTGATTATTGCTGAAAAC---AGTAAGGACA
i caePb3.Scfld02_0      I 2 I 61
s caeJap4.Scaffold17934   377175 90 -   591668 TATGTTTAGATTTTTCCTGTGCTAATGAAATTGGCCACGAATCCTACGGAGGAAGAAGTTTTGTCATAATTTCTCAGAAC---TCAAAAAATG
i caeJap4.Scaffold17934 C 0 C 0

a score=-5182.000000
s ce10.chrX              4825983 50 + 17718866 CTGATGTGATGAAGTA---------TGTACTTTAAATTAGATCTTTGCTAATTTTAGAT
s cb4.chrX              10158986 46 + 21540570 CTAATGTAACCAAGTAAGC------Tttgaaacaactgaaaaa-------attttaaaa
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   1720522 45 -  4500979 CTGATTCGTCAAAGTTAG-------TCTAATATAGATGAGTTT-------ATTCCAAGT
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold409     51625 49 -   201088 CTAATCCCGAAAAGtaattgaa---attgtttcaattcaaaac-------aatacAAAT
i caeSp111.Scaffold409  I 3 I 3
s caeJap4.Scaffold17934   377265 47 -   591668 ATAATCCAGCACTGTAATTCAAGTTTTTGATTTG---CAAAAC-------AATACCA--
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3078583 61 +  4147112 I

a score=31666.000000
s ce10.chrX              4826033 134 + 17718866 TTTCAGAAGTTCCGTGGATAACGTTTTCAGAAACAAGAATAGTATCTTCTACCAGCTTAGTCCTTTTGTCAACTCTG----CTCCTCCA-----CAGCGATATGCAAACTTTTTCGCTGTTCTGAATAAATGTTCCGAAACTG--------------------------------
s cb4.chrX              10159040 128 + 21540570 ttttagATCTTCTGTTGATAACTTGTTCCGCAACAAAAACAGTTTCTTCTATCAGCTCATTGACC-------CACTAACGTTAGTTCCGTCGTCC--CGATACTCCAATTTCCTAGCCGTACTGACAAA------TGGAGAAA--------------------------------
i cb4.chrX              I 8 I 8
s caeRem4.Crem_Contig0   1720575 134 -  4500979 ---CAGAAGTTCAGTCGACAATGTTTTCCGTAACAAGAACAGTATTTTCTATCAACTCACTGATCTTCTAAACACTGACGCCTATTCGGGTAATCGATGGTACAGTAATTTTGTTGCTGTGTTGAATGA------TGGCTCGA--------------------------------
i caeRem4.Crem_Contig0  I 8 I 9
s caeSp111.Scaffold409     51677 135 -   201088 --TCAGGTCTTCGGCTGATAATGTTTTCCGTaacaaaaatagtattttttatcaattatcCGAATTTGTGAATGACAATAACTATATCACTCAACCACGttatgaaaacttttttgctgtCTTGCACAA------TGGACCAA--------------------------------
i caeSp111.Scaffold409  I 3 I 1
s caePb3.Scfld02_0       3078644 131 +  4147112 TTTTAGGTCTTCAGTCGACAATGTCTTCCGAAACAAGAATAGTATTTTCTATCAACTGTCTGATTTCGTGAACGGAGACGCTTACAATA------AACGTTATGACAACTTCCTGGCAAAGTTACATTA------CGGAACTG--------------------------------
i caePb3.Scfld02_0      I 61 I 26
s caeJap4.Scaffold17934   377312 157 -   591668 TTTCAGATCTTCTGTTGATAATGTTTTTCGAAACAAGGACAGCATTTTCTTACAATTGACGGACTACAAAAACTCTCAAAATCCT------------CATTATACCAATTACATTGCCAATTTACAGCC------TGGAGGAAGAATAGTAATATTAATTATTGTTGCCACTTAT
i caeJap4.Scaffold17934 C 0 C 0

a score=-3074.000000
s ce10.chrX              4826167 21 + 17718866 CACAAACGGAGGTATACTTTA
s cb4.chrX              10159176 13 + 21540570 ATCAAACAG--------GTTA
i cb4.chrX              I 8 I 6
s caeRem4.Crem_Contig0   1720718 12 -  4500979 CACAGACA---------GTAA
i caeRem4.Crem_Contig0  I 9 I 2
s caeSp111.Scaffold409     51813  3 -   201088 ------------------TTA
i caeSp111.Scaffold409  I 1 I 1
s caeJap4.Scaffold17934   377469 20 -   591668 CATaaccagaaaattt-ttta
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3078775 26 +  4147112 I

a score=13472.000000
s ce10.chrX              4826188 100 + 17718866 AATAAAATACATATTA--------CTTTTACTC---ACAAA-TCAATTT---TATAGCAAAGCTCTGACTATGGAACGTTTTTAACAAAAGTTATGAATGTTACTAGTAAATCAC
s cb4.chrX              10159195  88 + 21540570 gacaaaatttcatttt--------------------ccatg-TTAATTC---TACAG---CATACTGATTACGGAAAGTTCATGACAAAAGTTCTGAGTTATACTAACACTTCAT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1720732  96 -  4500979 ---AAACTTTGATTTC---------ACACACAGACACCACT-TCACTTA---TTTAG---AGCTCTGACTATGGAATCTTTTTGACCAAAGTGATGAACGCTACCAGTAGTTCTC
i caeRem4.Crem_Contig0  I 2 I 23
s caeSp111.Scaffold409     51817 109 -   201088 AATAAAACTCAAGTAAGGCACCAGTGTTCAAAA---CTATGCTAATATTAAATTCAG---GACacgaattatgaaaaatttttgacaaaagTAATGGCAGCAACCAGTGGCTCAC
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3078801  96 +  4147112 aacaaaatgagaatca---------gttcAAAT---TTATA-TAACCTT---TCTAG---AGTCCCGActatcaaacatttttgacaaaaataatGAGTGCAACAAGCAGTTCGA
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold17934   377489  75 -   591668 ----------------------------------aaatgat-ttatttt---tttaggaaAGTTCGGATTATGGAGTATTCTTAACAAAAGTTATGAATGCAACTAGCAATGC--
i caeJap4.Scaffold17934 C 0 C 0

a score=-9468.000000
s ce10.chrX              4826288 23 + 17718866 AACAACGACCCAATGATCCAAGT-------
s cb4.chrX              10159283 13 + 21540570 ----------CATCTGGCGCAGA-------
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold409     51926 22 -   201088 -CACCTCCCCTTTCGATTGATGT-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3078897 22 +  4147112 -CAGACCATAAAGGAAACGAAGA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377564 19 -   591668 -----------TATAAATTCAGACACTTCT
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1720828 23 -  4500979 I

a score=2757.000000
s ce10.chrX              4826311 8 + 17718866 GATCCTGT
s cb4.chrX              10159297 8 + 21540570 GTTTCTGT
i cb4.chrX              I 1 I 86
s caeRem4.Crem_Contig0   1720851 8 -  4500979 GATGCTGT
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold409     51948 6 -   201088 --TCCCGT
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3078919 6 +  4147112 --CGCCAT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   377583 8 -   591668 GAATCTAT
i caeJap4.Scaffold17934 C 0 C 0

a score=7375.000000
s ce10.chrX              4826319 56 + 17718866 CAAGGTCACAAATTTCCTGCCTCAAGCAATTGCAGGAGCGAACGCCTATTCTGGTA
s caeRem4.Crem_Contig0   1720859 56 -  4500979 GTCTATCAACAATTTATTAACATCAACAGTTCAGTCAGCCACTCCATATTCAGGTA
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold409     51956 54 -   201088 --CTATTAGGGCACTCTTAGAGGACACAATTCAAAGCGTGAATACATATTCAGGTT
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3078927 54 +  4147112 --CTGTCAAAGATATCTTAGTGAACACAATTGCGAATACCAACACTTATTCAGGTT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   377591 56 -   591668 TCCGATTACTGAACTGCTAGTTGAAACGATTGATTCTTCTGATCCATATTCcggta
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10159305 86 + 21540570 I

a score=-4204.000000
s ce10.chrX              4826375 13 + 17718866 --AAACCCGCTGAGT
s caeSp111.Scaffold409     52010 11 -   201088 --TTAAAGgcg--tt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3078981 11 +  4147112 --TGAATCAAT--TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377647  7 -   591668 aataaac--------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10159305 86 + 21540570 I
e caeRem4.Crem_Contig0   1720915 31 -  4500979 I

a score=-5862.000000
s ce10.chrX              4826388 21 + 17718866 AATTAAAAATATTAAGGATCA---
s cb4.chrX              10159391  7 + 21540570 --------------AATTcaa---
i cb4.chrX              I 86 I 8
s caeSp111.Scaffold409     52021 21 -   201088 ttttggaaatgcgTGAAACAA---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3078992 20 +  4147112 AATTGTCAGT-TGTAAcagaa---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377654 21 -   591668 ---aaaaaaaaaaaaacataatca
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1720915 31 -  4500979 I

a score=59083.000000
s ce10.chrX              4826409 273 + 17718866 TGTT---TTTAAGACATTCTGCTTGTGATTAATTATAACGTGTCTACCATT---ACCGACAACGATGCTACCGAAATCAAAAGTGCATTAGAAAAACAAAGATCTCGAGTAAGTTA-----------------Cattaatta----attaataaaatta--------------------atCTTT----------------AACGAACATATG---TTTCAGCTATACATTCTTTTTGTTCAAACGTATTTCAACTAC---ACTGATACTTACTATGCCATGAACAAACTGGCGATTGCGAGTGGAGGAGTGGCGATTCGAGTGAACACTTATGATGATTTG
s cb4.chrX              10159406 324 + 21540570 ---t---ttttagatattcTGTTTGTTGTTAACTTTAATGTGAGA---ATG---AGTGCTGATGATTCTCTTGCAATTAAAACTGCATTAGGAACAAAGAGATCTAAGGTA--ATAACATGGGGAGACCAAAACActcctgg----aaaaataatttttatcgGGACGACGGAACTAACGTTATTTTTATCGGGACGACGGAACTaacgttatttttttcagttgtttgtTCTATTTGTGCAAAGTTACACGCAATATGGATCCGATGTTTATCAATACATGAACGACTTGGCAATTGCCAGTGGTGGTATTGCTGTCCGACTAGATAACTATGATGAATTG
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   1720946 262 -  4500979 tttt---tCTTAGATATACTTCTTGTCGTGAACTATAATGTTTCT---GTC---AGTGATGATGATTCAACAGCAATCAAAGCGGCTTTGGAAAAGCAAAGATCGAAGGTA--TTA------------------ATTCC--------AAAGAAGTTTTTG-------------------Gttat-----------------aacaaaaa-------tttcagttgtttgtTCTATTTGTTCAAACAAACATGCAATATGAAAGTGATATCTACACGTATACGAATGATTTGGCTATTTCAAGTGGAGGAGTTGCTATTCGATTGAATAGTTACGATGACTTG
i caeRem4.Crem_Contig0  I 31 I 1
s caeSp111.Scaffold409     52042 264 -   201088 --TTTTGTTTAAGACATGTTTCTGGTAATCAACTACAATGTTTCT---GTT---ACGGACGATGATGTGGTAGCTATTCAATCAGCTCTGGCAGTTCAAAGATCCAAGGTG-----------------------TGTCTCTT----GAAAACGACACTG--------------------GTCATT----------------CAGTAATA-------TTGCAGTTGtacattctttttgttcaaacTTATACCTTTTATCCAAACGATGTCTATTACCAACTCAATCAGTTAGCAATTTCAAGTGGAGGAATCACTGTTCGGTTGAATAGTTATGCTGATTTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3079012 260 +  4147112 --tt---ttccagacattTTCATTGTGGTAAATTACAACCTCACT---GTC---AGTGACTCCGATGTACAAGCTATCCAACAACAGTTGGAAGTGCAAAGATCCAGGGTA--CTA--------------GAGTTTTATCTG----GAGGAAAGTaaat--------------------gtcaat-------------------------------tttcagctatatgTTTTGTTCGTCCAAACCTATATGAATTATACAAGTGATGTCTACTACCCAATGAACAAGTTATCTATTGGAAGTGGTGGAGTTGCAGTTCGACTGAAAGACTATAATGAACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377675 275 -   591668 ACAT---TTTAAGATATTCTTTTTGTGATCAATTATCCAGTTTTG---GTGGGAGGTGATGATGATGTTACACAAATAAAACGTGAACTATCAAACAAACGGATAAAAGTAAGTTT------------------ATTctatgaaatgaaaaaaaaaatt--------------------gttcga----------------acCCCTTA-------TTTTAGCTTTATGCTCTATTTATTCAAACTGATGATTCTCCAAAGGATGATGCCTATAGATATCTGAATAATTTAGCCGTTGCCAGTGGTGGAGTGGCAATTCGCTTAAGAAACTACACTGAATTG
i caeJap4.Scaffold17934 C 0 C 0

a score=-1140.000000
s ce10.chrX              4826682 21 + 17718866 AGCACGGTTTGTTATTTTTAA
s cb4.chrX              10159730 18 + 21540570 CATACGGT--ATTACT-ACAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     52306 21 -   201088 AATACTGTGAGTTTTCTTCAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3079272 16 +  4147112 CATACGGTTTGTTATT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   377950 20 -   591668 CATCAGGTTT-TGACTTTTAA
i caeJap4.Scaffold17934 C 0 I 20
e caeRem4.Crem_Contig0   1721208  1 -  4500979 I

a score=-729.000000
s ce10.chrX              4826703 2 + 17718866 TC----
s cb4.chrX              10159748 6 + 21540570 TTAAGC
i cb4.chrX              C 0 I 22
s caeSp111.Scaffold409     52327 2 -   201088 TC----
i caeSp111.Scaffold409  C 0 I 98
e caePb3.Scfld02_0       3079288 0 +  4147112 C
e caeJap4.Scaffold17934   377970 20 -   591668 I
e caeRem4.Crem_Contig0   1721208 1 -  4500979 I

a score=0.000000
s ce10.chrX              4826705 2 + 17718866 TA
e caePb3.Scfld02_0       3079288 0 +  4147112 C
e caeJap4.Scaffold17934   377970 20 -   591668 I
e cb4.chrX              10159754 22 + 21540570 I
e caeSp111.Scaffold409     52329 98 -   201088 I
e caeRem4.Crem_Contig0   1721208 1 -  4500979 I

a score=-6831.000000
s ce10.chrX              4826707 401 + 17718866 CATATGTATATACACACATACAGTCGTTTTTGTGTTGCTCACTTCGTCTTGAGTAATCAATCGGGAAGTGTTCATTGCGCTCGCTAATAAATCATAATGCGAACTAACTGTGTTACCTTGTACAACTCAAGAACTTTCTTTCAAAAATGGAAAACATTTAGGGGTTCAACTAAGGAGTTTCAGTGCAGTTCTAATTTTTAAAGTCTAAATTTGatatatatatcattcattcacgtcttcaaggcaaaacatataaggggagatcgtatacaaataatcacagggaagaattggtggatgataaaatgatcccataagccgttactagtttgagagatcaagttgTCAGGACTTGTTGGTTGATTCCTCA---CATACTGCTGTTGAAGAGTCGCAATAAGTCA
s caePb3.Scfld02_0       3079288 140 +  4147112 -------------------------------------------------------------AAGGCCCTGTTGATAGC--------ATAAATAgta---------------------------------------------caaaaattagaaa-----------------------------------------------------------------------------------gtcaGGAAGAAACATGT--------------Taccaa----------------------------aaagtgattt---------------------gaaaataacatgTGGCAACATGCGGGCTTGTCCCTCAATACAATTTTCGGTTCAGAAat----ataatttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   377970  20 -   591668 I
e cb4.chrX              10159754  22 + 21540570 I
e caeSp111.Scaffold409     52329  98 -   201088 I
e caeRem4.Crem_Contig0   1721208   1 -  4500979 I

a score=-3253.000000
s ce10.chrX              4827108 55 + 17718866 ATTTATTGAATCTCTGA------------TAACAT---TCTAAGTGATAACTTAAGTTATA-------TAACAACTG--
s caeRem4.Crem_Contig0   1721209 62 -  4500979 ATGTcgtaagtttttgattttgtcaCTCCAAACATGACTTTATG--------AAAGTAATC-------CATAATCTG--
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3079428 39 +  4147112 -----------------------------aaacat---ttttaa--------aaagttattgttcgtgcacaatttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   377970 20 -   591668 I
e cb4.chrX              10159754 22 + 21540570 I
e caeSp111.Scaffold409     52329 98 -   201088 I

a score=-314.000000
s ce10.chrX              4827163 2 + 17718866 TA
s caeRem4.Crem_Contig0   1721271 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     52427 1 -   201088 -t
i caeSp111.Scaffold409  I 98 I 1
s caePb3.Scfld02_0       3079467 1 +  4147112 -g
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   377990 2 -   591668 ta
i caeJap4.Scaffold17934 I 20 C 0
e cb4.chrX              10159754 22 + 21540570 I

a score=85370.000000
s ce10.chrX              4827165 187 + 17718866 TTCCAGTTCTTTGCACAATACTTCCCACTTCTCGTTGCAAATGACATTGTCGCAAAAGCATATGCTGAAAACCCAAGACCTGGAGTTGCGTTGAATAATGTCAATCTACTTGCTCAACAATATGTTCTTCTTGTAACAAATGAGGATTCATTGGGAGATGGCCCGGTGCCAGGTACCAATTTAATTG
s cb4.chrX              10159776 187 + 21540570 ttccagttctTCACGTTATATTTCCCCACACTTATTGCCAATGATATTGTTGCAAAAGCATACTCAAGTGATACAAAACCTGGAATTGCTCTGAACAACGTTTATTTGCAAGAGCAAAAATATTATCTTCTGTTGACAAACGAAGATTCAAGTGAAGATGGACCAGTTAATGGTGAGCAGATAATTG
i cb4.chrX              I 22 I 49
s caeRem4.Crem_Contig0   1721273 187 -  4500979 TTGCAGTTCTTTGAACAGTACTTCAAACGTCTTGTGAGTAGTGATATCGTAGCAAAAGCATATTCCGAGAATATGAAAGCCGGAATCGCTCTAAACAATGTCTATCTACTCCCCATCACCTACTATCTTCTAATTACTAACGAAAATTTGGCTGGTGATGGCCCGGTAACTGGTAGGTTACTAAGTA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold409     52429 176 -   201088 tttcagttttttgttcaatacTATCCTGTACTGGTTGCAAACGACATCGTTGCCAAAGCATATTCTGAGAATCAAAGACCTGGAATTGCATTGAGCAATGTCAATTTGCTCCCAACTATATATTACTTACTTTTGACTAACGAAGATTTGTTAGGTGATGGAATTGTAAATGGTTA-----------
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3079469 176 +  4147112 tttcagttctttgCTCAATACTTCCCAATTCTCGTTGCAAACGACATTGTTGCAAAAGCTTACTCTGCGAACCAAAAAGCCGGAATCGCCTTGAATGATGTCTACTTGCTCGCTGAAAGTTACTATTTGCTTGTGACAAATGAAGATGCGCTTGGAGATGGAATTTCTCAAGGTGA-----------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   377992 184 -   591668 tttcagtttttcaaattgtaCTACTCAACATTGGTAGATAATGATATTGTTGCTAAAGCATTTTCGGAAAACCAAATACCTGGCATTGCCCTGAATGAGGTCTACTTACCTTCCGAAGATCACTATTTGTTAGTGACCAATGAAGATATTTCTGATAGTGGGCCGGTGAATTGTGTGTAAATTG---
i caeJap4.Scaffold17934 C 0 C 0

a score=-8107.000000
s ce10.chrX              4827352 55 + 17718866 TTTCTCAATTCTA------------TCGAAACAACCT------CTTCTTTTAGCATCGGTAACTGTTACCGGG
s caeRem4.Crem_Contig0   1721466 42 -  4500979 -------------------------------CATTTTAGTTCGGTTATTCTAGCAACTGTGAATGTTAATAAC
i caeRem4.Crem_Contig0  I 6 I 6
s caeSp111.Scaffold409     52605 60 -   201088 GTTTCCAAAAGTA---------AT-TAGAAATATTGAAGT---GATTTTACAGCAACTGTCACAGTCAGCGGC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3079645 70 +  4147112 GCTATTAATGATATGAACACTCATATATAAAAcgagtagt---ttttttttagccaCTATCAATGTTAATGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   378176 55 -   591668 -TTTTCCCTTTTT---------ATATCCAAAAATT--------GGTAATTTAGGCACAGTTCTTGATATGGAT
i caeJap4.Scaffold17934 C 0 I 3
e cb4.chrX              10159963 49 + 21540570 I

a score=16214.000000
s ce10.chrX              4827407 103 + 17718866 ATTAATGTTACACAACTACCAAC---AATTGGCGAACTTCAATTATTCACTCTTATTCCAGAAAAGGCTGGTGTGTTTAACATTCCTATTTTGTTTGCTACTTCCG
s cb4.chrX              10160012 103 + 21540570 ATTAGTGTAGCATCCACCCAAAC---TATTGGAGAACTTCAATTGTTGACTATTCAACCACAGTCTGCCGGTGTCTATAATATACCAATTCGATTTGCCACCCCTG
i cb4.chrX              I 49 I 13171
s caeRem4.Crem_Contig0   1721514 103 -  4500979 GTCACTGCTGTTACTACATCTTT---CATCGGTGAGCTCCAACTGTTCAGTGTCACTCCATTAACTGCTGGAGTATACAACATTCCTATTATGTTTTCTACCTCTG
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409     52665 106 -   201088 GAAATCGCAGTCAGTCAATTGAATTCTATTGGAGAACTCCAACTTTTTAAACTGACTGTAAGCGTAGCAGGCGTATACAATATCCCAATCTTGTTCTCTACAGCTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3079715 103 +  4147112 ACAACGGTCACTAACATATTGAA---CATTGGAGAGTTGCAACTATTTGAGCTCACCGCAAAGAGTGCAACAAAATACAACATCCCTATCTTTTTCACTACAGGCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   378234  87 -   591668 ATTCATGTCGAGCAACTTGAAAT---AATTGGAGAACTTCAAGTGTTTAAATTAACTCCCAATATTTCGGGGTTATACAACATACGAGTA----------------
i caeJap4.Scaffold17934 I 3 C 0

a score=18140.000000
s ce10.chrX              4827510 177 + 17718866 -------------GATTTTCTCAATACGTGAGTTTTCAGTTTTA-------AAGTTTTTTAAAAAATTA---TCAGTTTTAGTCGAACGCTGTTTTGTTGGCTAGTACTACAAGTACCAGTGACTTCATCAGTTTGAAATTTGTGGATTCAAGCGGAAATCTGAGAAATGATGCGGTTTATAACGGTATTTGGAAAGAAT
s caeRem4.Crem_Contig0   1721617 164 -  4500979 -------------GATTTGCACAGTTTGTAAG---TGAATCTGATGTCACcatgttttataaaaaatta-------ttttagtcAAACGCGATTCTTGTCACTAACAATGCT------CCCGATATTATCAGCTTATCTTTCATTGACAGTGGTGGTGAAAACCGCAATGATATAGAATTCGATGGt-------aagaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     52771 167 -   201088 -------------GTCTTGCTCAATTCGTAAG---TCAACCGTA---TTAAAAGTTTCA----AACTCGAATAAGATTTCAGTCAAACGCAATTCTGCTTGCCAATACCGGTAG---CCAAGATTTCATAAGTTTGTCATTCATTGACAAAGATGGTAGAAATAGGAATGATGTTGTTTTCAATGGT-------Aacaac
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3079818 173 +  4147112 -------------GACTTGCTCGATATGTAAG------ATTCTA---CAAAAGGTTTcacgacaatttt--ttttatttcagtccAGCGCTATTCTTTTCGTCAACACTGCTAA---CCAGGATTTCATTAGTTTGTCATTTGTTGATAAAGATGGAAAGAATCGCAACGATATTGAGTACAATGGTtggctgaaatatt
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17934   378321 184 -   591668 GAATTTCCGTCTAAACTAGTTCAGCTGGTAAC-Atagattttta---taaaatttctgGTCATAATTTA-------ATTTAGGTAAATGTCATTTTACTATCCGGATCTACATC---TGAAGACTTCATAAGCTTGTCGTTTTTAGACAAAGAGGATCAAAATCGAAATGATGTCGACTACAAACGTAGGTTCTAGGA--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-2771.000000
s ce10.chrX              4827687 26 + 17718866 GAGTGAAAGTTAAGAGAA------ATAATTAT
s caeRem4.Crem_Contig0   1721781 28 -  4500979 aaataaaaattgttttattg----ttaaaaat
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     52938 32 -   201088 atcaaaaaattatcaaaatagCGCCTAATAAT
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   378505 22 -   591668 --AATGAAACTGACAAATTT----TTGA----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3079991 27 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=26496.000000
s ce10.chrX              4827713 107 + 17718866 TTTTA---CTTTAA--GGAAAATTCACTCCATTGTTCTATTCATCTTCATCTTTTGATGACGGGTCAAAAATTACCATTACATACAGTGATGCAACAAACCCAGCAAATGTA
s caeRem4.Crem_Contig0   1721812 104 -  4500979 --------ttatagGTGGAGCGTTCACACCAGTGATATATTCTTCTAAACCGTTCGGATCTGGTTCTGCTATTTCTGTCACTTACAGTGATGCAGCAAATCCAGCAAAGGTA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold409     52970 103 -   201088 ---------TTTAGAAGGAGGAGTTATCCCCGtgttttattcttcttctccgtttGATCCCAACTCCAATATTTCAATCACGTACAGCGATGCAACTAATCCAGCTAAAGTA
i caeSp111.Scaffold409  C 0 I 19
s caePb3.Scfld02_0       3080018 105 +  4147112 TTTTA---TTGTAGATGGAGCGTACACCCCAGTGATATATTCTTCATCTCCATTCGATTCATCATCAAATATCTTCATTACCTACAGTGATGCAGCTAATCCAGCTAA----
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17934   378527 110 -   591668 --TTAAACTTTCAGAAGGCAAATTTACACCTTTCCTATATTCATCTTCCAACTTTTCCGTCGAATCGCAAATTTTTATCACCTTTAGTGACCTTGCCAACCCGGCAAAGGTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-2268.000000
s ce10.chrX              4827820 27 + 17718866 GGAAAAGCGATGATAGTCAGTTTGACA
s caeRem4.Crem_Contig0   1721916 13 -  4500979 --------------AGTTCATTTATAA
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0       3080123 13 +  4147112 --------------AGTaagtttcagc
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   378637 21 -   591668 ----AGGTATTC--GTTTTATTTCAAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     53073 19 -   201088 I

a score=67312.000000
s ce10.chrX              4827847 1033 + 17718866  
s caeRem4.Crem_Contig0   1721939  915 -  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold409     53092  969 -   201088  
i caeSp111.Scaffold409  I 19 C 0
s caePb3.Scfld02_0       3080142  944 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   378658  914 -   591668  
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-4538.000000
s ce10.chrX              4828880 47 + 17718866 CGTGTTTTTGACATGTAGATACTTTTAATGTCAATGTTTTTCTACAA
s caeSp111.Scaffold409     54061 10 -   201088 ---------------------------------aaattattct----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3081086 13 +  4147112 ---------------------------------ATGTTTTCTTGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   379572 23 -   591668 ----GTTTTAACA--------------------CGCTTTTTCTATAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1722854  0 -  4500979 C

a score=-6702.000000
s ce10.chrX              4828927 113 + 17718866 TTTAAAGTTCCGTTAATTGTAATTCCTATAGAAGTTTTTTTGCGGTCTGATAGTATTGCACTGGAAGAATTTTGAAAGATAATCAGGTTTGCCAGAACTATAAACCATAAAGT
s caeSp111.Scaffold409     54071  29 -   201088 ----------------------------------------------------atttttc-------------------aaaat--gaatttcctCCGTTATA-----------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3081099  87 +  4147112 -CTGAACTCAAGT--------ATTGCTACAAA-------------TACGatggtttttcgagaaaaaaaacaagacaaaaaat--gcttttcgACCTCTAAAAGCCTGAAA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   379595   0 -   591668 C
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1722854   0 -  4500979 C

a score=-4933.000000
s ce10.chrX              4829040 33 + 17718866 ATGGATGACTTATCGAACAT-TTGCAATGGATAA
s caeRem4.Crem_Contig0   1722854 21 -  4500979 ATGTATAAAGCATTGAACCTT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     54100  5 -   201088 ---------------GATAA--------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3081186 18 +  4147112 --ACTTTATATATCTGATAT--------------
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17934   379595  0 -   591668 C
e cb4.chrX              10160115 13171 + 21540570 I

a score=-4027.000000
s ce10.chrX              4829073 67 + 17718866 GAGAAATTATGAGGAAATATGACATTCTTAAAAAATGTGCGCATATATAAAAACCAGAGACAAAACT
s caeRem4.Crem_Contig0   1722875  7 -  4500979 -----------------------GCTCTCA-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3081209 29 +  4147112 CAATACTTACAATGAAAAAT---GCTATTATA-----------------------------------
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold17934   379595  0 -   591668 C
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     54105  0 -   201088 C

a score=-4802.000000
s ce10.chrX              4829140 67 + 17718866 ATTTCAATTAAAAATTGTTTTTGCACTGTCTTTAAAAAAAATTTACAAAAATATGTTTTTCAGCTCA
s caeRem4.Crem_Contig0   1722882 58 -  4500979 ---CCAATCAGGtatt------gcttttttcaaaaaccggtTGGTCAAACTCAACGTATTTCAGTTA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3081238 65 +  4147112 --TCTAGTCATGCAATCGTTAGGCATTTCTCGTCAAAGAGGTTACCACTATAAAGTTATTTAGCTTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   379595 18 -   591668 ATTTCAACT-------------------------------------------------TTCAGCTGA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     54105  0 -   201088 C

a score=85461.000000
s ce10.chrX              4829207 341 + 17718866 CCGACCGTGCATTTGTAATTGTATACACATCAAATTCCAATGTCACCATTGATCCTGACTTTTTGATCCGTTTGGCAGTCAGAAGAGCCGAAGTACGAGTGTTGTCAACTTC---GGGAACTGAAAGTCAAAACTCTATAACATTATCGCTAGTCGGAAATGGAATTCCTATTGCGATAAATGGCGCGAAAGATTTCGAAAATGTAAGCGA------------AATTAAAGTCAAAATCCAGTTAA-AAATGCTAATTTCAGTACCTGACATACTACGTTGTTCCCTTATTCCAATCACTACAATACCAAGTGAACACTCCACAACGAGTGTTCAATGTGTTCCAAACAGGTCAATT-----
s caeRem4.Crem_Contig0   1722941 343 -  4500979 CTAACAGAGCATACATTGTTGTGTATACTTCTAATGCGGATGTTCCAGTCGATCAAGATTTCTTGATCCGACTTGCAGTTAGAAGAGCTGAAGTTAGAGTGCTTTCGGTTTC---AGGCACAGAAAGTGCAAACTCGCTTACACTCTCTTTGGTTGGAAACGGAATTCCAATCTCCAGTACAGGTCCTGGCGATTTCCAAAGCGTAGGTGACAacaaattatttaaaaaaattattacatTCATA-----------TTTCAGTACTTGACTAATTACGTTGGGCCGTTATTCCAATCTTTACAATATCGAGCAAATATTCCACAACCAGTGTTCAACGTTTACAAAACAGACCAACT-----
i caeRem4.Crem_Contig0  I 1 I 21
s caeSp111.Scaffold409     54105 338 -   201088 CCAACCGTGCCCTCGTCATTGTCTATACATCAAATGCTGACGTTCCCATTGATAGTGATTTGCTAGTTCGACTTGCTGCCAAAAGAGTTGAATTGCGTGTTCTGTCTACCTC---TGGAGCAGAAAGTCAAAATGCCAAAACATTGTCGCTTGTTGGAAATGGAATACCACTTGCAATAGAAAAATCGGGAGATTTCCAAAACGTGAGTTGGAAA--------CGAGAAATCCAGTTcttcattg--------aattttcagtatttGACCACTTACGTCGGACCACTTTTCCAATCACTACAGTACCAAGCAAATATTCCACAAATGgtattcaatgtttttcaaacagGACAGCT-----
i caeSp111.Scaffold409  C 0 I 11
s caePb3.Scfld02_0       3081303 341 +  4147112 CAAACCGTGCTCTCCTTGTTGTCTATACTTCAAATGCTGATGTCCCAGTTGACAGCGATTTCCTGACTCGACTAGCTATAAAACGAGCTGAAGTACGAGTTCTTTCCATCTC---CGGTGCCGAGAGTGATAATGCCAGAACTCTTTCTCTTGTCGGAAATGGTATTCCAATAGCTGTCACAAACACTGGTCACTTCCAAACTGtgagttt------------tgtaaaaattacTATTTCGACGG-ACTGGAAGTTTACAGTACTTATCCTCCTATGTTGCACAATTGTTCCAATCATTGCAATACCAAGCAAATGTTCCACAACGCGTTTTCAATGTGTTTAAAACAGATCAATT-----
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   379613 349 -   591668 CGAGCCGATCATTCATTATTGTATATACCTCCAATCCGGACGCAGATCTTGACTATGATTTTCTGATTCGTCTTGCAGCCAAACGAGCTGAGATTCGCGTCATTACGACACAAAGTGGATCATTTAGCCATACGTATCAGACGCTTGCACTGATTGGTAATGGGATTCCTGTATTAATCAGCGAAGTGGACGACTTTGAAAATGTAAGTA-------------AATCGGCGTTTTTAGTTGGTTATCGTAAGTATATTTCAGTACTTGAAAAATTACGTAACGCCAATTTTTGTTTCTCTACAAAAAGGTTCTTCCGCGCCACAAAAAGTTTTCAACGTGTTCCAAACTGGAACACTGAGTG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-2437.000000
s ce10.chrX              4829548 21 + 17718866 CTACAACTCTACGCAAATTTC------
s caeSp111.Scaffold409     54454 13 -   201088 CCACTACT--------ATCAC------
i caeSp111.Scaffold409  I 11 C 0
s caePb3.Scfld02_0       3081652 13 +  4147112 CGACAACT--------GTAGA------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   379962 19 -   591668 CAGCAGGT--------GTAACCGTCAC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1723284 21 -  4500979 I

a score=-4349.000000
s ce10.chrX              4829569 154 + 17718866 TATCCCAGCAGATTCCACATTTGATAACGCTA-AACCAAATCTTTTTGTGCATGTGTACGAAGGTCGCATTAATTATTCAGGTATGTTGAG------AATGATG-------AACTAAT------AGTAAGTTTGAGTTGTTT----ATTTTTGCAGAT-------CCTTC-------AAC-----AAATGGAAACGA
s caeRem4.Crem_Contig0   1723305 143 -  4500979 TATTCCAAAAGATTCCACATTTGATAACACGATGATCAAC-ATTTTTGTCTACATATACAAAGGATACATTGCAGAATATGGTTTGTCTCa--------------------aattatt------actg-------------tttcaatattttcatcg-------CAATT-------ACAGACAGCATTAAAAAACA
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold409     54467 136 -   201088 TATTCCCAAGGACAGTACTTTTGATAATGTTA-AATCGACTATCTTTGTTCATACCTACAAAGGGAATGTGGACGGGACAAGTTTGTG---------AAAGAAGCATTCAGAAATAAT------AGTG-------------T----ATTCTTTTAGCT-------CCATC-------ATT-----CAT---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3081665 151 +  4147112 AATTCCCAAGGATACACTTTTCGATAATGCTC-AATCAATTCTTTTTGTCCATGTTTACAAAGGACGGTTGGATGGAACGCGTTAGTTTCTAATCACAGTGAAAC------AATTTAT------AATA-------------T----AAACTTTCAGCTAGTTTCACCCCT-------ATTGGTACTAT---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   379981 150 -   591668 TATTCCACAAGATTCGACTTTTAGTGATTCTA-AAACAATTGCATACATTCAGACATTTAATGGAAAAGTTGAAGGCAAAGGCAAGTGACT------AGAAACT-------GATTTATTACTTAAATA-------------T---GAATAATGCAGAT-------CCATTCAAACAAATTGGAGCAA----------
i caeJap4.Scaffold17934 C 0 I 84
e cb4.chrX              10160115 13171 + 21540570 I

a score=-4728.000000
s ce10.chrX              4829723  98 + 17718866 GGTTGGCAATTCTACTATATACT---TTCTCCCTTATGACCCCACAAGTAAGCCTGTAGCTATTTTCGAAGCAACCACAACTTTTGACTT------------ATAGAAC--CTAT
s caeRem4.Crem_Contig0   1723448 107 -  4500979 AGCTGGAGACTTTACCATGTACAATATTGTCGGTTACAATCCCAAAGGT-----TGAGAATAATAACACGA-ATAAGTAGTccttaaattgttttttcagaagtaaaAA--TACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     54603 100 -   201088 ---AGGAGATACCcaaatttacaaaatttcTAATTACGATCCAAGAGGT--------AATTGTTATCAATA-ATTTAAATTCATTGAGCATGATTTCAGAAGGtcaaaa---tat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3081816 102 +  4147112 ---TGGAGATACAAAAATCTACTCGATTCCATATT---ATCAAAAAGGT-----AACAATAATTATCAGT--GTTAACAGACTTTgatgtaaaattttgaagatggaAAACCACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   380131  84 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=7231.000000
s ce10.chrX              4829821 80 + 17718866 ------CAACTTAATTGTGAATAATAATGGCACGACCGGTTACTACGCAATCGAAGTCATCGGATATCTAAAGGTATCTTAAATTT
s caeRem4.Crem_Contig0   1723555 80 -  4500979 ------CCCATTAAAACTGTTCACTTCTGGCAAAAACGGATACTATTCAATAGAAATTGTTGGGTACTTTAAGGTaaatttttctc
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold409     54703 76 -   201088 ------tgttttgaaacaaaatgtgTCCAATGTAAATGGATACTACGCTATCGAAATTATTGGTTATCTAA----AAGTTAATTTC
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3081918 80 +  4147112 ------TTCTTTGACATGGAATACTGGTGGCGTAACAGGCTTTTATGCAGTTGAAGTGGTTGGATATTTGAAAGTAAgttcacttc
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17934   380215 79 -   591668 CAACTACAAATTG-TGCAGCTTAGTGCGGACCAGAACGCGTTTTATTCAGTAGAGACGATAGGATACTTAAAGGTAATGC------
i caeJap4.Scaffold17934 I 84 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-4526.000000
s ce10.chrX              4829901 29 + 17718866 GAATGATCAAACTTTAAAAA--AATATACCC
s caeRem4.Crem_Contig0   1723644 19 -  4500979 gaataaactacCTCTAACT------------
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold409     54784 24 -   201088 --GCAAGATCCATCGAATTA--ATTATA---
i caeSp111.Scaffold409  I 5 C 0
s caeJap4.Scaffold17934   380294 31 -   591668 TAAGGAACAGTTCCCAATGAGCGTCATATCT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3081998 27 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=138248.000000
s ce10.chrX              4829930 639 + 17718866  
s caeRem4.Crem_Contig0   1723663 661 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     54808 643 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3082025 640 +  4147112  
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17934   380325 654 -   591668  
i caeJap4.Scaffold17934 C 0 I 749
e cb4.chrX              10160115 13171 + 21540570 I

a score=1146.000000
s ce10.chrX              4830569 2 + 17718866 GT
s caeRem4.Crem_Contig0   1724324 2 -  4500979 gt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     55451 2 -   201088 gt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3082665 2 +  4147112 GT
i caePb3.Scfld02_0      C 0 I 123
e caeJap4.Scaffold17934   380979 749 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=302.000000
s ce10.chrX              4830571 2 + 17718866 CT
s caeRem4.Crem_Contig0   1724326 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold409     55453 2 -   201088 tt
i caeSp111.Scaffold409  C 0 I 233
e caePb3.Scfld02_0       3082667 123 +  4147112 I
e caeJap4.Scaffold17934   380979 749 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=0.000000
s ce10.chrX              4830573 840 + 17718866  
e caePb3.Scfld02_0       3082667 123 +  4147112 I
e caeJap4.Scaffold17934   380979 749 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     55455 233 -   201088 I
e caeRem4.Crem_Contig0   1724328  52 -  4500979 I

a score=782.000000
s ce10.chrX              4831413 209 + 17718866 TTTCTAAAACTTT------TAAAAGTTGTTTTTGTTAAAATAAAGTAAAATTTCCATTCACATAATAATATTTCCAGCTT--TTGAATCAGAACCAGC-----TTCGTCTACTGTCTCC-GTGATAACTTCAACTACTATGCTGCCTTCTACGTCAACTGTTGCTCCAAGCACAAGTATAAATATTATGTACTTACCTGAGTAACTAAACCTACATTCAGGCC
s caeRem4.Crem_Contig0   1724380 184 -  4500979 tttctgaaaccttagatactgaaaattgtttggg--aaaagaaaatgagtttttcctTTCC-TATTGATGTgtttattttaattcaatgaaaatttgcaGCGTTCGGTCAATCACCACCAGTAACAACTTCAGCTCCAA---------------CAACATTAGCTCCAA---TAACTATGTACATTTCGT-CTTCCACAAAT-----------------GTCC
i caeRem4.Crem_Contig0  I 52 C 0
e caePb3.Scfld02_0       3082667 123 +  4147112 I
e caeJap4.Scaffold17934   380979 749 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     55455 233 -   201088 I

a score=584.000000
s ce10.chrX              4831622 33 + 17718866 AATCAACAATAGTTTCCACTGTTA---CTACACAGT
s caeRem4.Crem_Contig0   1724564 24 -  4500979 CATCTACCTCAACTACACCTGTTC------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     55688 36 -   201088 AATCCACCACTGTTATCACTGTTCCCACTACACATT
i caeSp111.Scaffold409  I 233 C 0
e caePb3.Scfld02_0       3082667 123 +  4147112 I
e caeJap4.Scaffold17934   380979 749 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=2439.000000
s ce10.chrX              4831655 7 + 17718866 CACCAAG
s caeRem4.Crem_Contig0   1724588 7 -  4500979 CATCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     55724 7 -   201088 CAGCAAC
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   381728 7 -   591668 CATCAAC
i caeJap4.Scaffold17934 I 749 C 0
e caePb3.Scfld02_0       3082667 123 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=38303.000000
s ce10.chrX              4831662 212 + 17718866 TCCTTCAACAACAGCTCCAAAACAAGTCCGAGCTGCTGCATTCATTATTGACTGCATGGGAACTGATGATTATGCTTTCAATCAGACATTCGTATG---AGT-------T-----TATTATAAAGAAGAT-------ATACAGTATTTTCCATTTCAGAAATCGATTGCACAGTACTTCAAGACATTTGGCTATAGCCATTACATCATGTTAACCAATAATTTGAATGGAAGTT--
s caeRem4.Crem_Contig0   1724595 213 -  4500979 TATCACGACTACATCTCCAAATGTAGTTCGAGTTGTTGCTTTCGTCATTGACTGTATTGGATCTGACGATTTCGCCTTTAACCAAACAATAGTGAG---TGTTAGAAAAT-----TA-TGCAGCTGAAGG-------AGacgaacatttt----tcagcaatctaTTGGGGAGTATTACAAATCGTTCGGAAACAGTCATTGGGTTATGCTGATATCAAACATCGATGGGGAC---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     55731 211 -   201088 TCAAACAACAACTGCACCAACTGAAATAAGAGCTGCTGCATTTATTATTGATCTTATTGGAACTGACGATTATGCATACAACAACACAATCGTGAG---TCT-------T-----TT-TCCAACGTTCATTGctattaaataatttttat------agcAATCAATTGTGACATATTTCAAAGCTTTTGGAAATATTCACTACATCATGTTAGTCGGGAATTTGAACGGAAAT---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3082790 214 +  4147112 TCCAACAACCACCACTCCCAAAAACTTTCGAGTCGTGGCATTCATTCTTGACTTGATTGGAACAGATGATTATGCTTACAATCAAACAATTGTAAAAACTCT-------T-----TA-TGCAATTCTGAT---TCTTaaccaatttttgt----tcagCAATCTTTGACGCAGTACTATAAAGCTTTTGGAAGCAGCCATTGGGTCCTGCTGGTACACAATTTGAATCAAACTT--
i caePb3.Scfld02_0      I 123 I 14
s caeJap4.Scaffold17934   381735 217 -   591668 TCTATCCACTGAAGCCCCACAAACAGTTCGAGGTGTTGCTTTTGTTATAGACGTCATTGGATCGGATGATTATGCTTTTAATCAGACTACGGTGTG---TTT-------TGTCTGTT-caccaaataaaa-------aaatagtttgaaTGATTTAAGAAGTCAATTGTTGAATACGCGAAGGCATTTAATAATGTTCACTGGATTATGCTTCTTGGGAATTGGAATGTGACC-GT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-6952.000000
s ce10.chrX              4831874 32 + 17718866 TACAATTGAACAATGGAAGT-------TTACTATTTGAA
s caeRem4.Crem_Contig0   1724809 14 -  4500979 ---TTTTAGA----------------------ATTTCCA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     55942 15 -   201088 -----TTGAACGA----------------ATCATTT---
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   381952 34 -   591668 TAGATTCGGATTCCAGAAATATCCGTCCTCTGAT-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3083004 14 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=14998.000000
s ce10.chrX              4831906 243 + 17718866 GATTTC-CAACAATATTCAGATGAGAGTATGATTATGAGCAAACTACCCCTGTATTGGAGTTTAAGAGCCACCCCAAGTAGAACCGCTAGCGTCAGCAAGTGAGTT-------ATCATAT-TACATTTGGGTTCTAATGTAGCGA-----------ATACTTTCAGCGCGCTCAGTAAGATTCTTGCAAGTTACAATAGAAACGGTACAGAGTTCAAAAACTCTGTAAGCATGAATATTTTTTATGCAACTCAAATAGGGTAA
s caeRem4.Crem_Contig0   1724823 237 -  4500979 ---TTC-CAACAATATCAAAACGAATCATCGATTGTGAACAAGACAATGCTGTTTTGGAATGATAGATATATTGCAAGTAGAAATTCCAGTCTGACCTAGTGAGTTGTAGAG-TTGTTGT-CC---------TGAACTGATACTA-----------TTATTTGAAGCGCACTGAACAAAATCAACAAAGCTTTCATGGATAGAAAGACACAATTTGAAGGTGCACTCAGTTCTAACATTTTCTATCTCACTCAAATAAGGTAA
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold409     55957 242 -   201088 GCTTTT-CAACAATATGATGACGAAACATATCTTTTCAACAGAACACTTCTTTTCTGGCCTCTTAGATCTATTCCAAGTAGAACATCTAATGTAACTTCGTGAGTTTTATTCAATGATATGTG---------Tctgttaaaaaaa-----------attatctcaGAGCTCTCACGACGATCAGAGATGCTTACGATGCAATCGGCACGAAATTCAACAATGCCGTCAGcttgaacattttctatttgtcTCAAATTGGGTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3083018 246 +  4147112 GAGTTC-CAACAATATCAAGGTGATCAATACCTTTTGAATGCTACAGTTGATTTTTGGCCACTTCGCTCAAAGGCAAGTAGAACATCCAGTGTAACTTTGTAAGTTT------ACGATAT-Ta---------taaactgaagaagaagaacattgcACTTTTGCAGGGCTCTCACTACCATCAAAACTGCGTACAACAACAAAAGAGAATATTTCAACTCTGCCGTGAGCTTGAATATTTTCTACTTGACACAAATTGGGTAC
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17934   381986 220 -   591668 GCTTTAGCCACAAAATTGAG-TAACTTCTGgattttgcgaaaaacagCACAA----GACACCAAAGTTGCAAGTCTATCAAAGTTTGAGATATGATATCTTTA----------ACgttat-tt---------catttt------------------aaatttccagAACACTTCCTTTTATATTGGACTCTTACAACCAAAATGGAGACTTGCTCCAAAACCCGAGAAGTTTGAACATATTTTATACAACGCAGATCGGGTAC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-6142.000000
s ce10.chrX              4832149 33 + 17718866 -------GTTACTCAA-TTTTTTTGAGTAACGGGAGCCTAT
s caeSp111.Scaffold409     56199 11 -   201088 -------At----------atttca-------------tat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3083264 20 +  4147112 -------ATGGAAAAG-gaattttg-------------ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   382206 26 -   591668 GTTTCTAATAAATAAATGaaccttg-------------t--
i caeJap4.Scaffold17934 C 0 I 11
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1725060 34 -  4500979 I

a score=-1272.000000
s ce10.chrX              4832182 12 + 17718866 GAAATGTTAAAA------------
s caeSp111.Scaffold409     56210 24 -   201088 tcatttttcaaaaaccctattctt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3083284 19 +  4147112 caagttttcaaa-----tcgTTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   382232 11 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1725060 34 -  4500979 I

a score=1872.000000
s ce10.chrX              4832194 4 + 17718866 TTTC
s caeRem4.Crem_Contig0   1725094 4 -  4500979 tttc
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold409     56234 4 -   201088 tttc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3083303 4 +  4147112 TTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   382232 11 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=-2326.000000
s ce10.chrX              4832198  9 + 17718866 AGGCT--GGGC
s caeRem4.Crem_Contig0   1725098 11 -  4500979 agtctcaaaGA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     56238 11 -   201088 agatttgcaGC
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3083307  9 +  4147112 AGAAT--AAGC
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17934   382243  9 -   591668 agaTTAACA--
i caeJap4.Scaffold17934 I 11 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=1849.000000
s ce10.chrX              4832207 7 + 17718866 GATGAGG
s caeRem4.Crem_Contig0   1725110 7 -  4500979 AGTGATG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     56250 7 -   201088 AACGATG
i caeSp111.Scaffold409  I 1 C 0
s caeJap4.Scaffold17934   382252 7 -   591668 GATGACG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3083316 14 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=30784.000000
s ce10.chrX              4832214 363 + 17718866 ---ATCCAA------CTGCAGCAGGCTTAGAAGTTTTCAACAAGAGGTAT-TTAATGAGCTCT--------TTTAATAAAAAAAAACAAC-------ATTATCATTTTCAGCGCGATTGTATATTCTGCATTCGCAAAAAATGCCAACCAGACAATTGTGACTTCTCTTC---AAAAATTCAGTACCGACGTAACCACTGCTAGAGATTATTACAGTGGTCTTTCTGATATGTATGAAAGCACT-----CAACCCCAGGGTTCGAATGAGCT---CCCTCCAAAACGTATGTTGAAAATCGATAAATTTTAGCTG-A---------CTA-----TTTGTACTGTTTTAGCGGATCAACTTAGTTGTGTGTACGGCCTGCAATCGAATATCAAAATTGCAATTGATAGA--TCCAAC
s caeRem4.Crem_Contig0   1725117 370 -  4500979 ---ATCCAACAGCAGCTCTTGTCGGGCTGGAACAGTTCCAAAAAAGGTTC------GAGTTTTTTACTGTGTTTGATACATAACCAca---------tttatctttttcagttccGTTGTATTCTCctcatttacaaaaaaagcaGATCAGGCAGTCTTGGattcgttga---aaaaattcagtgCCAATGCTACCGCTGCACAAACGTATTTTGACGGTTTACAAGCAATGGTGACGGATACAATGGACAACACTGGAG--CGAGT---TT---GCCCACTAAACGTATGTCAAATTGAAGAGAGACTCCCACA-A---------TTAAAGATTAAAAA-TGTTATAGCTCCTACCCTCAGCTGTGTGTACGGACTGCAATCAAACATCAAACTAGCCATCGACCGT--TC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     56257 362 -   201088 ---ATCCGACAGTTAACATGGGTGGATTGGAATTGTTCAATAAAAGGTTCACtgataaacttttttc----tttgataaaTTTCAA------------------TCTTTAGTGCGGTGGCATATTcgtctttttcgaaatcagtTGATCCGACCGTTCtcgattcattga---aaaagttcagcAACGACGTTTCGGGCGCCAGAGATTATTACAGTGGATTGACAGCATTGGTGGCCAGCACTGCAGAAAACACAAAGG--CGATA---CT---TCCAGAAAAACGTTGAGTTTATT------TCGTGTACCTG-G---------ctataattattttattgttttagCAGCACCTCTAAGCTGTGTATATGGACTTCAATCCAACATTCGAGTGGCTATTGATAGA--GCCCTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3083330 360 +  4147112 ---ATCCAA----TAACATGGGCGGCTTGGACTCTTTCACTAAAAGGTAC-TTTCTGAACTGTTAACACAAGTCGATGAATT----------------------TTTACAGTGCTGTTGCCTATTCCCCGTTCACAACATCAGTTGATCCAACTGTCACCGACTCTCTGAAGCAAAACTTCAGCACTAACGTGTCTACAGCTCGAGAATACTACAACGGATTGTTGTCAATGGTCACTAGCACCAATCAAAATGCAAATG--CAATT---TT---GCCAGATAAACGTATGttttatt------acttttctttGTG---------TCAACACTGTTGGA-AATTTTAGCAGGAACGTTCAGTTGTGTCTATGGGCTTCAATCCAACATTCGTGTTGCTATCGATAGA--TCAAAT
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17934   382259 371 -   591668 ATCATCCAGAAAATTCGCTAAATGGTcttgaaaattttacaaaaaggTGC---------------------GGCAATAAAACATTCCAGTTAAACCATTTAATTTTTACAGTTCGCTGGTTTTCTCCACTTTTTCCAAGAATGCTAGTCAGACAGTTTTGGACTCTCTGA---ATAACTTTAGCAACAATGTTACTAACGTTCGTGAGTATTACAATGGTCTGCAAACGATGGTTAAGGAAACAAATAATAATGAagatg--caaaa---ataaataatacaaaacgtaaattttttc------caacttaTGCA-AAAGTGACATCTAACATTTTTA------TTTAGCAAAT---TTCAAATGCGTGTATGGTCTGCAAAGTAATGTTATGGTAGTAATCGACAGAACTCCAAC
i caeJap4.Scaffold17934 C 0 I 67
e cb4.chrX              10160115 13171 + 21540570 I

a score=108.000000
s ce10.chrX              4832577 49 + 17718866 TCGTCAAACCCAGAG--GTTAACACAATTGTAAGTTTGT----AAAAATCAAAAA
s caeSp111.Scaffold409     56619 44 -   201088 CC--CAGTTCTGAAGCTGTAACAACCAGTGTAAG---------TGAcctcgagaa
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3083690 53 +  4147112 TT--TAGTTCAAATGCTGTTAACGAAAGTGTGAGTTGatacaataatttcaaaaa
i caePb3.Scfld02_0      C 0 I 323
e caeJap4.Scaffold17934   382630 67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1725487  0 -  4500979 C

a score=452.000000
s ce10.chrX              4832626 15 + 17718866 AAAACTGTACATTTT
s caeRem4.Crem_Contig0   1725487  9 -  4500979 -AAAATGTAC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     56664 15 -   201088 aaaattgtttttttt
i caeSp111.Scaffold409  I 1 I 4
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382630 67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=-51.000000
s ce10.chrX              4832641 221 + 17718866 CACACTTAAAGCAGCATCAATAGAGAACTTGTTTGAAGCTTGCTAAAATTATTGACTATAATACAACTTTTCAAAAAAGAAACGATTATTCAAGACATTTTTATTTTATTAGATGTATGTATGGATATTTTCTTTTCAATTCACAAAAATTTACGTTTTCATTTTAATGA-ATTGCGAATAATTTTCAATGCTGACATTCTAACATATGTAGGAGTATTAAC
s caeRem4.Crem_Contig0   1725496 143 -  4500979 --TGATGAAATCAGTAACAG-AGTGAGTTTATTTGAGTAATTGTAAAACTAATGCTTA------AGTTTTCCA--------------GTTAAACACATTCCT-----------------------------------------CATAAACTTCCGATTTCCTTTCaattatattgaaaatga----------tgaa-----gacaGATGTGGAACTACAAAC
i caeRem4.Crem_Contig0  C 0 I 42
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382630  67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56679   4 -   201088 I

a score=0.000000
s ce10.chrX              4832862 39 + 17718866 TTGCTTTGTTTTCTTCAGCAATTTAGAAAACGATCAGAT
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382630 67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56679  4 -   201088 I
e caeRem4.Crem_Contig0   1725639 42 -  4500979 I

a score=729.000000
s ce10.chrX              4832901 49 + 17718866 ATAAATTTTCAAAACTGAAAAATAC-------AATTCTCACATCCGTTGAAACCTC
s caeRem4.Crem_Contig0   1725681 54 -  4500979 atattttttaaagacttgaaaatccaaaaacaaatttaaacgTCTCTCAAAACC--
i caeRem4.Crem_Contig0  I 42 C 0
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382630 67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56679  4 -   201088 I

a score=632.000000
s ce10.chrX              4832950 24 + 17718866 ATACCTTTTTTTTACTTCAGATGA
s caeSp111.Scaffold409     56683 24 -   201088 atactttttcgaaattctagCTAA
i caeSp111.Scaffold409  I 4 C 0
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382630 67 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeRem4.Crem_Contig0   1725735  0 -  4500979 C

a score=2720.000000
s ce10.chrX              4832974 64 + 17718866 ATAATTTCCTTGTCAATTTCCGTCTTGGATTTAATTATATTGAAAATGATGACAACAGATGC---GG
s caeRem4.Crem_Contig0   1725735 33 -  4500979 --------CTTACTCGTCTCC-TTTGGGTCTCAAAAGTGT-------------------------TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     56707 67 -   201088 ACACATTCCTTACCAACTTCCGTCCTGGATTCAACAACATTAATAACGATGTCGACAGATGCTCATC
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   382697 64 -   591668 ATGATTTTCTCCGCCAGTTCCGTGAAGGATTCAACTACATTGAAAACGACGAGGACCGATGT---GG
i caeJap4.Scaffold17934 I 67 I 66
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=-503.000000
s ce10.chrX              4833038 31 + 17718866 GGATAAGTTACCAGAATTTTATACCGGTAAG
s caeRem4.Crem_Contig0   1725768 23 -  4500979 AGAAACTCTGACA-CGCCTGAAAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     56774 31 -   201088 AAATCCTTTGCCAGCGTTTTATAACGGTGAG
i caeSp111.Scaffold409  C 0 I 89
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382761 66 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=-3386.000000
s ce10.chrX              4833069 491 + 17718866  
s caeRem4.Crem_Contig0   1725791 355 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e caeJap4.Scaffold17934   382761  66 -   591668 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56805  89 -   201088 I

a score=-335.000000
s ce10.chrX              4833560 7 + 17718866 ACTTTAA
s caeRem4.Crem_Contig0   1726146 1 -  4500979 ------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   382827 7 -   591668 atttCGT
i caeJap4.Scaffold17934 I 66 C 0
e caePb3.Scfld02_0       3083743 323 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56805 89 -   201088 I

a score=1092.000000
s ce10.chrX              4833567 2 + 17718866 TT
s caeRem4.Crem_Contig0   1726147 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3084066 2 +  4147112 tt
i caePb3.Scfld02_0      I 323 C 0
s caeJap4.Scaffold17934   382834 2 -   591668 TT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     56805 89 -   201088 I

a score=70676.000000
s ce10.chrX              4833569 615 + 17718866  
s caeRem4.Crem_Contig0   1726149 605 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     56894 614 -   201088  
i caeSp111.Scaffold409  I 89 C 0
s caePb3.Scfld02_0       3084068 569 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   382836 558 -   591668  
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=-435.000000
s ce10.chrX              4834184 13 + 17718866 AAGATTTTTTTTT
s caeRem4.Crem_Contig0   1726754 13 -  4500979 GAgtgtcattttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     57508 11 -   201088 --AAGCCGTTTTC
i caeSp111.Scaffold409  C 0 I 42
s caeJap4.Scaffold17934   383394  7 -   591668 --GAGTTTT----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3084637  2 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=32.000000
s ce10.chrX              4834197 2 + 17718866 GG
s caeRem4.Crem_Contig0   1726767 2 -  4500979 tg
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   383401 2 -   591668 AG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3084637 2 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     57519 42 -   201088 I

a score=0.000000
s ce10.chrX              4834199 486 + 17718866 AAAATCAATGTTTTCGAATATGTCACAGTTTATGATTAAAAAAGAGAAAAAAATTAGCAAATTTGTTAACAAATAAAAATACGCAAGATCCAGCAGAAAAAGGCCAAAAATTAGACATTTTCTCGACCAAAAAATCAATGTTTTCCTTAAAAAACCAAAACTTTCTCACAAAAATACGTTTTTTTCTAAAAGTTAAAACAAATATTCGTAAGTTGCTTAAAAAAGTttaaaaaacccccgaaattaaacttaatattttgaacaaaatctgataatgtacatattttctcaagctcagttcaagatgttttttttttaactataagctgaaacttaaatagtatTTGTCTTCATCTTTTTTGAAAAATTGGATTTTTATTTCGAGAGGGAATTTTAAACATTCAAAACGACACAACTTGCTCTGAAACACTGAAACAGTTTTTTTAATTTATTGCGAAAAAAATCTGTGGTTCATTGTGAAATTCC
e caePb3.Scfld02_0       3084637   2 +  4147112 I
e caeJap4.Scaffold17934   383403   0 -   591668 C
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     57519  42 -   201088 I
e caeRem4.Crem_Contig0   1726769   0 -  4500979 C

a score=242.000000
s ce10.chrX              4834685 4 + 17718866 AATC
s caeRem4.Crem_Contig0   1726769 4 -  4500979 aatt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3084637 2 +  4147112 I
e caeJap4.Scaffold17934   383403 0 -   591668 C
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     57519 42 -   201088 I

a score=-207.000000
s ce10.chrX              4834689 18 + 17718866 AAAAAATTGTTTACATGG--
s caeRem4.Crem_Contig0   1726773 18 -  4500979 ttaaaatcGTTCGcactt--
i caeRem4.Crem_Contig0  C 0 I 11
s caeJap4.Scaffold17934   383403 18 -   591668 --AAAAGAGTTACTACGTGC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3084637  2 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I
e caeSp111.Scaffold409     57519 42 -   201088 I

a score=1993.000000
s ce10.chrX              4834707 15 + 17718866 -------TTTGATTTCAGAACT
s caeRem4.Crem_Contig0   1726802 15 -  4500979 -------ttatttttcagaacc
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold409     57561 15 -   201088 -------ttgaattttagaacC
i caeSp111.Scaffold409  I 42 C 0
s caeJap4.Scaffold17934   383421 22 -   591668 TTCAAATGTGATTTACAGGTCT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3084637  2 +  4147112 I
e cb4.chrX              10160115 13171 + 21540570 I

a score=12108.000000
s ce10.chrX              4834722 253 + 17718866 GCCGGTGTTGACCCAACAGCAATC------CCACCATAATTTTTCGAATCCAACATTGAGAATAGGCACGATGACTATTACTACTGAATGTT---CGGCTAAACATTTGTTTGTACGAATAAAGAATGAAACATTTT--------CCCTTTATACATTCATTATTTGGGAAAAAAAAAC------AATCAAGTTAA------------------------------GGT--GACAAG------------------------AACAATTGATATTGGGATTATTGGAAAACAAAAATAACATATAACAATTTGTAGTAAAACAATTCAAACAA
s caeRem4.Crem_Contig0   1726817 248 -  4500979 taTGGTGTCGATCCCACCAACGTT------CCACCTTCATTCTTTGAatcaaacattgaaaatagGCACAATGACTATTACTACTGAATGTT---CGACTAAACATTTGTTTGTACGAATAAAGTA--AAATGCTCT--GTCCccgttttcaaatattcattttt---------aaaggG-----AAATCAATTAGTGACTAGG-------------------Ttaaat--attggg---------------------------caaaaatagtgagatca----acaacgtgaataaaaaataaa-acatataaacaaaatatacaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     57576 230 -   201088 GCTGGTGTTGACCCAACTGCAGTT------CCCCCATCATGGTTCAAATCCTACATTGAGAATAGGCAGAAGGATTACTACTACTGAATATT---CGACTAAACATTTGTTTGTACgaataaaga---aaacattct---------tattttaatttgaatttat---------taaAC------AATTGGACTAG------------------------------AAT--TTCA------------------------------ATGCATAACGAGATCA----AACGATTGAGCAAAAAGTAAATGTACATAAGTTtgttattcttcttc
i caeSp111.Scaffold409  C 0 I 4
s caePb3.Scfld02_0       3084639 235 +  4147112 GCTGGCGTTGATCCGACCGCAGTTCCGCCACCTCCAACTTTCTTGGAATCCTACTCCCTGACTAGGCAAGAAGACTATGACTACGGAATTTTTTACGATTAAGAATTTGTTTGTAcgaatgaagaaagaaacaattt---------tcttttcatttttattgat---------aaaat--------tGGAATTAG------------------------------AATAATTCGGT---------------------------CACTAATGATGAGATCA--------ATTTGGTA------GACTAGATATAGTGTTGTTATGAATATAC
i caePb3.Scfld02_0      I 2 I 8
s caeJap4.Scaffold17934   383443 296 -   591668 GCGAAAGTCGATCCAACAGCTATC------CCGCCAGAACTGGACGAGATGCGTTTTGAAAGTAGGCAAAATTACTTTTACAACTGATGTAC---GGATTAAATCAGTGTTTGCatgaataa------aaatgtttttgatttttctttttttatgcCAACTTTT---------ACGAGATTTCCGATTTTATTGGAGGATGATAAATCATAACACCCGTGTCTTTATT--TTCAGATCCATTATGTTATTTTTCACACAAAAACAGCCAAAATGATCGCA----ACACGTGGAATAGTAACAGAA------TAGAaaatcaattcaaaaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10160115 13171 + 21540570 I

a score=125538.000000
s ce10.chrX              4834975 176 + 17718866 ---ACTAGTCATCTAATAGAGCCAAATCCGGATCTGGCAGATAACCTTCATCAATATCCGCATCAATTGCACATTCTGGATTGCACAAATGAGATTTGGCACGCATGTTTGCAGAGAGAAGCATGTGACGACGAAGTCTTGCTTTCAAATGCTTTGTCTGCTTCGATCGTTGACAACGA
s cb4.chrX              10173286 176 + 21540570 ---acaaatttttgaaaaaatcaatatccgGGTCCGGTAGATACTCTTCCTCGATATCTGCTTCAACAGCACATTCCGGATTGCAAAGATGAGATTTCGCGCGCATGTTGGCAGAAAGTATCATGTGACGACGCAGTCTGCCCTTCAGATTCTTGGTCTGTTTGGATCTGAGACATCTA
i cb4.chrX              I 13171 C 0
s caeRem4.Crem_Contig0   1727065 176 -  4500979 ---tTTAGTCATATAACAAGGCCAGATCTGGATCTGGCAGGAAGCCTTCATCGATGTCCGCTTCAATAGCACATTCTGGATTGCAGAGATGAGATTTGGCTCGCATGTTTGCAGACAGAAGCATATGACGGCGGAGTCTTCCTTTGAGATGCTTGACTTGCTTTGGTCTCAGGCATCTA
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold409     57810 174 -   201088 -----acttcaTAAATTAACGTGGCATCAGGATCTGGAAGATATCCTTCATCAATATCAGCTTCAATAGCACATTCTGGATTGCAGAGATGTGATTTGGCACGCATGTTAGCAGACAAGAGCATATGACGTCGAAGTTTGCCTTTTAGATTCTTGGTATACTTTGCTCTCTGGCATCTG
i caeSp111.Scaffold409  I 4 I 58
s caePb3.Scfld02_0       3084882 174 +  4147112 -----ATTTCATACATCAAGGCCAAGTCAGGGTCTGGGAGGTATCCTTCTTCAATATCGGCTTCGATAGCACACTCCGGGTTGCAAAGATGAGATTTGGCACGCATGTTAGCAGACAGAATCATATGACGTCTGAGCTTGCCTTTAAGGTTCTTGATGGACTTCGGTCTTaggcatctg
i caePb3.Scfld02_0      I 8 I 48
s caeJap4.Scaffold17934   383739 179 -   591668 atcacttcTGATGGGCGAACGGGAGGTCTGGATCTGGAAGATATCCATCATCAATGTCAACCTCAACGGCACAATCTGGATTGCAGAGATGTGATTTGGCGCGCATATTTGCAGACAACAACATGTGGCGACGCAGACGTCCTTTCAGGTTTTTAGTTCGCTTTGTACGTAGACATCTG
i caeJap4.Scaffold17934 C 0 n 0

a score=180831.000000
s ce10.chrX              4835151 280 + 17718866 CAGTCGCAACCGGCTACCGGGCAATACTTTTCCGTTTCGAACCACGTCGCTATATGGTTCACGTGTCCACCATGATTGCAAATCTAAAGTT--------------TTATTTAATTTT----CCGTA--------AGAATTTTGGTGC-AAAGCACTTACATTGCAAATGCTGAACTGCGAGAAGCTTTCATTGTAATCTTTGAGCGCAAAGTCCATGTGGTCATTCAAATAAGGGCACATACAGACGCAGCAGCGCGGTAAGGAGAAACGACATTGGAAGCAACCGAATCGAGATGGAAGGACTTGC
s cb4.chrX              10173462 278 + 21540570 CAGTCACATCCAGCAACCGGACAATACTTCTCAGTCTCAAACCACTCGGCAATGTGGTTGACGTGGCCTCCGTGGTTGCACATctgaaa----------------ttaaataatttt----ttaaa--------aacaattctCTTC-CAAACACTTACATTACAGATACTGAATTGCGAGAATCTCTCATTGTATTCTTTGAGAGAGTAATCCATATGATCGTTCAAATACGGAACCATACAGATGCAACATCTTGGAAGTGAGAATCGACATTCGAAGCATCCGAAGCGAGATGGCAAGACTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1727288 283 -  4500979 CAGTCACATCCTGCAACTGGACAATACTTTTCAGACGCGAACCATTCCGCAATGTGATTGACATGACCTCCGTGATTgcagatctgaaa----------------atgtttcgttTTAAAGTTAAG--------AAAACTGTCCTGCTTGTAAACTCACGTTGCAAACGCTGAATTGAGAGTATCTCTCGTTGTACTCTTTGAGAGCATAGTCCATATGATCGTTCAAGTAAGGGCACATGCATACACAACATCTTGGAAGTGAGAAACGACACTGGAAACATCCGAAACGAGATGGTAAGACTTGA
i caeRem4.Crem_Contig0  I 47 C 0
s caeSp111.Scaffold409     58042 278 -   201088 caATCGCATCCTGCAACTGGacaaaatgtttcagattcaaaCCATTGTGCAATGTGACTAACATGTCCACCATGATTACaaatctggaa----------------gaaaataaatata---ttggAATTACCTGAGAGTTTCA----------ACTTACGTTGCAGACACTAAACTGTGAGAATCTTTCATTCCGCTCTTTAAGAGCAAAATCCATATGATCGTTCAAATAAGGACACATGCAAACGACGCATCGAGGAAGCGAAAAACGACATTGGAAACATCCGAATCGAGAAGGAAGCACTTGA
i caeSp111.Scaffold409  I 58 C 0
s caePb3.Scfld02_0       3085104 275 +  4147112 CAATCACAACCAGCGACCGGACAgaatttctcagttttgaacCATTCGGCAAGGTGGTGCACGTGACCTCCATGGTTGCAAATCTG---------------------AAaccaagatt---ttgaa--------aaagttctacTAAAGCAGCACTTACATTGCAAACCGCAAATTGTGAGTATCTCTCATTGAAGTCTTTGAGAGCATAATCCATGTGATCGTTCAAATACGGACACATGCATACAACACATTTGGGAAGTGAGAAGCGACATTGGAAACAACCGAAGCGAGCTGGGAGGATTTGA
i caePb3.Scfld02_0      I 48 C 0
s caeJap4.Scaffold17934   220966 289 +   591668 CAATCGCAGCCGGCAACTGGACAGAACTTCTCAGTGGCAAACCACTCAGAAATGTGATTTATATGTCCTCCATGGTTGCaaatctaaaaataaaaaattgacacATTCAAtcatttttgaggaaaa--------aaaaattcc----------actcACGTTGCAAACACTAAACTGCGAAAACCGCTCGTTTTTCTCTTTAAGAGCATAGTCCATATGGTCGTTCAAGTAGGGACACATGCAAACTGCGCAGCGTGGTAAAGAGAAGCGGCACTGGTAGCATCCAAATCGGGATGGTAGCAGTtgc
i caeJap4.Scaffold17934 I 7473 C 0

a score=-1358.000000
s ce10.chrX              4835431 109 + 17718866 TGA--------AAATTGACATATTTTCAAACGAGATGTAAACGGATGTACACGGATGGATGCTGCTCTACATCAAGTAGTAACCAATAGATTTACTTTTGGAAGATTTATTTTCACA
s caeJap4.Scaffold17934   221255  44 +   591668 tgagaaaaaaaaaaaccacacattttt------------------tgtaca-------------------------------------------------------ttatttttata
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3085379   0 +  4147112 C
e cb4.chrX              10173740   0 + 21540570 C
e caeSp111.Scaffold409     58320   0 -   201088 C
e caeRem4.Crem_Contig0   1727571   0 -  4500979 C

a score=0.000000
s ce10.chrX              4835540 105 + 17718866 TAGACTAAGTCTACCCTTCACTGTGACTTGTTCGGCTTAAAATTGCGATTAGATTGATAGTGAAGCCCAATGCACAATCAGCTTTTTCAACTCCTAAATTAATCA
e caePb3.Scfld02_0       3085379   0 +  4147112 C
e caeJap4.Scaffold17934   221299   0 +   591668 C
e cb4.chrX              10173740   0 + 21540570 C
e caeSp111.Scaffold409     58320   0 -   201088 C
e caeRem4.Crem_Contig0   1727571   0 -  4500979 C

a score=388.000000
s ce10.chrX              4835645 9 + 17718866 ACACATACC
s caeJap4.Scaffold17934   221299 9 +   591668 atgcTTACC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3085379 0 +  4147112 C
e cb4.chrX              10173740 0 + 21540570 C
e caeSp111.Scaffold409     58320 0 -   201088 C
e caeRem4.Crem_Contig0   1727571 0 -  4500979 C

a score=319652.000000
s ce10.chrX              4835654 447 + 17718866 ACAGTGATGTCCGTCTTCTCCTCCTCGATATCCTTTGCCATTAACATCTTATTCTCGGTGGGATCCAGAGTTTCAATATAATTCTCAAACGTTAGCCTTGGCGACATTGTCTTCGCATTTGGCCATCTCTTTTTGTCCTTGTCCTGCTCAATAAGTGGCATTGTCGAGACGCACAGTGTTCTTCCCAAACGACCCAGGTTGCGACCTTTCGACACGTTCATCTTGCACCCGGTACAAAGAACGTCAAACT-------AAAAAAAAAAGAAAATTAGATGGTGAAAGTTAAAAATTTTAGGGAA--ACTCACATAAAACTTGTGAGGATACGTGTTGAACTTTGGATTATGATCCAAATCACCCTTGGTCACAGCCGCTCCTTTTGTAAGTTCAAGAATTGCCATGTATCTTGTTACTTCGCACTCCATGATGTTAGCCAGTTCCTCTCTGAATAAA
s cb4.chrX              10173740 440 + 21540570 ACAGTGATGTCAGTCTTCTCTTCCTCAATATCCTTCGCCATCAACATTTTGTTCTCAACAGGGTCTAACGTCTCAATATAATTCTCGTAGGTCAGACGTGGTGACATGGTTTTGGCATTTGGCCATCTTTTCTTGTCCTTATCCTGTTCGATGAGAGGCATAGTTGAAACACAAAGTGTTCTTCCCAGTCTTCCCAGATTGCGAGCCTTGGCGACGTTCATTTTGCATCCAGTGCAAAGGATATTAAAct-------ggaaat-------attttgttaatttcacATAAATAAGGTTGAATT--GCTTACATAGAATCTGTGTGGATAGGTGTTGAACTTTGGATTGTGGTCTAAATCTCCTTTTGTGATTGCTGCTCCCTTTGTGAGCTCCAAAATTGCCATATAGCGAGTTACTTCACATTCCATCATTTCAGCCAActcttctctgaaaaaa
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0   1727571 439 -  4500979 ACGGTGATgtctgttttctcttcttcaatatCCTTAGCCATCAGCATCTTGTTTTCGGTGGGGTCCAATGTTTCAATGTAGTTCTCGAACGTCAGACGCGGAGACATTGTTTTTGCATTTGGCCATCTCTTTCTATCCTTATCTTGTTCAATCAACGGCATTGTGGAGACACAAAGTGTTCGACCCAGACGTCCCAAGTTACGTCCCTTTGCAACATTCACTTTGCACCCCGTACAGAGAacatcaaact-------gaaaat--------tataaatagaATAACGTtatcacaactttttc--actCACGAAAAATTTGCTTGGGTACGTATTGAACTTTGGATTGTGATCCAAATCTCCTTTGGTTACAGCGGCTCCTTTAGTGAGTTCCAAAATAGCCATGTACCGTGTCACTTCGCATTCGATAATCTCCGCCAGttcttctctgaaaacg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     58320 438 -   201088 ACAGTGatatctgttttttcttcttctatatCCTTAGCCAtcaacattttgttttcagttggatCTAACGTTTCAATATAGTTCTCCCATGTCAATCTCATCGACATGGTTTTTGCATTCGGCCATCTCTTCTTGTCTTTATCCTGTTCAATCATTGGCATAGTAGACACACAGAGTGTTCTTCCCAAACGACCGAGATTACGGCCTTTGCAAACGTTTGTTTTGCATCCAGTGCAGACAACatcaaact-------aaaaat----ttcatttccatgaaat------gaaatgatacgCTCC-ACTCACAAAGAATCTGTTCGGATACGTCTGGAATTTAGGGTTGTGATCCAAATCCCCTTTAGCCATTGATGCACCTTTTGTGAGTTCTAAAATGGCCATGTATCTTGTCACTTCGCACTCCATGATCTCTGCCAGTTCTTCTCTTAAATCG
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3085379 440 +  4147112 ACAGTGATATCGGTCTTTTCCTCTTCAACATCCTTCGCCATCAACATCTTGTTTTCGGTTGGATCCAAACTTTCAATGTAGTTTTCATAAGTCAGCCTTGGTGTCATTGTGTTAGCTCTTGGCCATCTCTTCCTATCCTTATCTTGTTCAATCATGGGCATGGTTGATACACAAAGTGCTCTACCCAGTCGACCCAGATAACGACCCTTCGCAACATTCGATTTACATCCAGTACAAACGATATCagtct-------gaaatt----gaatattctaTGAGATCCCAAATAGATGATGTA-----ACTCACAAAGAATCTAGTTGGGTAGGTATTGAACCTGGGATTGTGGTCCAGGTCACCCTTTGTTATTGCAGCTCCTTTAGTTAGTTCTAAGATTGCCAGGTATCTTGTCACCTCACATTCCATGAGTTCCGCGAGTTCTTCCCTGAAATCA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   221308 450 +   591668 ACAGTGATATCCGTCTTTTCTTCTTCAATGTCCTTTGCCATCAACATCTTATTTTCGGTTGGATCCAGTGTCTCGATATAATTCTCAAACGTCAGCCTTGGAGACATAGTTTTCGCATTTGGCCATCTTTTCTTGTCCTTGTCTTGTTCGATGAGTGGCATAGTGGAAACACAAAGGGTGCGACCAAGACTTCCTAGATTACGCGCTTGAGCCACACTCACTTTGCAGCCAGTGCATAGAATATCAAactataagaaaaaaat----atagcattgacaaacaacaacaaatataGCTCTAAACTACGCACAAAGAATCTAGATGGACgtgtattgaattttttgttgtgatCCAAATCACCCTTGGTAACAGCAGCTCCCTTAGTGAGTTCAAGAATAGCCATGTAACGTGTGACTTCGCACTCCATAATGTTTGCAAGTTCCTCACTGAAAA--
i caeJap4.Scaffold17934 C 0 C 0

a score=90.000000
s ce10.chrX              4836101 1 + 17718866 T
s caeRem4.Crem_Contig0   1728010 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold409     58760 1 -   201088 T
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3085821 1 +  4147112 G
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   221758 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10174180 36 + 21540570 I

a score=-6100.000000
s ce10.chrX              4836102 27 + 17718866 -----------CAACCATCAAGAAAAAATCATAAAATT
s caeSp111.Scaffold409     58761 20 -   201088 -----------TTTTCATATGGGAGA-------TATGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3085822 24 +  4147112 -----------TAACGATAAAATTTATCTC---TACTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   221759 28 +   591668 TGGATATTAGTTGATTATTAAACAAATT----------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10174180 36 + 21540570 I
e caeRem4.Crem_Contig0   1728011 26 -  4500979 I

a score=-2771.000000
s ce10.chrX              4836129 7 + 17718866 AACTATT-
s caeRem4.Crem_Contig0   1728037 6 -  4500979 -AACGTT-
i caeRem4.Crem_Contig0  I 26 I 1
s caeSp111.Scaffold409     58781 7 -   201088 AGAAATG-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3085846 7 +  4147112 AAATGCA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   221787 5 +   591668 ---CGCAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10174180 36 + 21540570 I

a score=415505.000000
s ce10.chrX              4836136 1055 + 17718866  
s cb4.chrX              10174216  998 + 21540570  
i cb4.chrX              I 36 I 15
s caeRem4.Crem_Contig0   1728044  966 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     58788  964 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3085853  962 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   221792 1025 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=2646.000000
s ce10.chrX              4837191 26 + 17718866 ATTATCTGTAAAAATTTGGTTACAAT
s caeRem4.Crem_Contig0   1729010 26 -  4500979 ATGATCTGTAAATATTAAAGTTCAAT
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold409     59752 18 -   201088 ATGATCTG--------AAATTGCaat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3086815 18 +  4147112 ATGATCTG--------AATAAACATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   222817 17 +   591668 ACAATCTG---------GAAATCAAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10175214 15 + 21540570 I

a score=789.000000
s ce10.chrX              4837217 5 + 17718866 GGTTT
s caeSp111.Scaffold409     59770 5 -   201088 aatta
i caeSp111.Scaffold409  C 0 I 27
s caePb3.Scfld02_0       3086833 5 +  4147112 GTTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   222834 5 +   591668 GTTTT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10175214 15 + 21540570 I
e caeRem4.Crem_Contig0   1729036 23 -  4500979 I

a score=-394.000000
s ce10.chrX              4837222 15 + 17718866 -ATCTCGTTGTTCATT
s caePb3.Scfld02_0       3086838 15 +  4147112 -Gcgaacttgaaaatt
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17934   222839 16 +   591668 CAGTCAATTATGCATT
i caeJap4.Scaffold17934 C 0 I 11
e cb4.chrX              10175214 15 + 21540570 I
e caeSp111.Scaffold409     59775 27 -   201088 I
e caeRem4.Crem_Contig0   1729036 23 -  4500979 I

a score=8591.000000
s ce10.chrX              4837237 15 + 17718866 CTTACGTATTTGCAC
s caeRem4.Crem_Contig0   1729059 15 -  4500979 CTCACATATTTGCAG
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold409     59802 15 -   201088 CTCACATATTTACAA
i caeSp111.Scaffold409  I 27 C 0
s caePb3.Scfld02_0       3086865 15 +  4147112 cttACGAATTTGCAA
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17934   222866 15 +   591668 CGAACGTATTTGCAA
i caeJap4.Scaffold17934 I 11 C 0
e cb4.chrX              10175214 15 + 21540570 I

a score=309642.000000
s ce10.chrX              4837252 642 + 17718866  
s cb4.chrX              10175229 649 + 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   1729074 649 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     59817 651 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3086880 656 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   222881 647 +   591668  
i caeJap4.Scaffold17934 C 0 I 724

a score=51650.000000
s ce10.chrX              4837894 463 + 17718866  
s cb4.chrX              10175878 454 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1729723 450 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     60468 454 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3087536 456 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   224252 444 +   591668  
i caeJap4.Scaffold17934 I 724 I 88

a score=-11340.000000
s ce10.chrX              4838357 58 + 17718866 CAATTTGC------------------CGAATCTTCATTGCCTGACAATAAA-------------------------------TCCACGATTTCGTTTTCATCG------TCTT
s cb4.chrX              10176332 94 + 21540570 gaattctt------------------cttttcttcagtATCCGATACAACA-TCTAGTTCTTCGCTTTTTATCTTCGCTACGTCAATGGTTTCCTTCTCAACAACGATGGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1730173 85 -  4500979 GTTTTGCT------------------GTCCTCCTCAATATCCGAAACAACAGTATCCTTATTCAATT----TAGTAGCTGGTTCCAAAGTTTCCTCTTGAACA------GTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     60922 76 -   201088 CATTCAGT------------------ATCTTCCTCAATATCCGAAACAACAGTATCGTCTGTGG-------TACTTGgaatttctga---ttgttttttgaca------G---
i caeSp111.Scaffold409  C 0 I 4
s caePb3.Scfld02_0       3087992 73 +  4147112 TAGTCAGTGGCCTTGCTATTGTCAGCGTCGTCTTCAATTTCCGAAGCA--------------------------TCGAGAGTTTTG-----TCCTCTTCAACG------T---
i caePb3.Scfld02_0      C 0 I 57
e caeJap4.Scaffold17934   224696 88 +   591668 I

a score=-16021.000000
s ce10.chrX              4838415  47 + 17718866 CATCCCCAATGG--------TAAGAATTGTCGGAGTGCGTTTCTTCTCCTCATGC-----------------------------------------------------------------------------------------------------------
s cb4.chrX              10176426 160 + 21540570 CCGACTCTATGGtc--ttttggctcttcttttcggtatttttcttgttctttttcctgtccttcttcttgttattgtccgccttcttgtCCAACTTCTTGACAGTTTCCTCGTCCCTCTTCTGTTTTCCTGTCTGGCCCATATTCTTCAGCATTTTCATTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1730258  56 -  4500979 CCAAAGCGATAG--------GAAGAATCTTATCAATAATGGTCTGAGTCTTCTTCTCG--------------------------------------------------------------------------------------------------CAAGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     61002  48 -   201088 -------GATAATTGGTTTGAAAgaatcttttgtttttgttgcttCAACTTTGTT-----------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold409  I 4 C 0
e caePb3.Scfld02_0       3088065  57 +  4147112 I
e caeJap4.Scaffold17934   224696  88 +   591668 I

a score=1140.000000
s ce10.chrX              4838462 10 + 17718866 ---ATTATCAATT
s cb4.chrX              10176586 10 + 21540570 ---TTTTACAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1730314 10 -  4500979 ---ATTAGCAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     61050 13 -   201088 CTCATCTGTAGTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3088122 13 +  4147112 TGAATTTGGGCTT
i caePb3.Scfld02_0      I 57 C 0
e caeJap4.Scaffold17934   224696 88 +   591668 I

a score=-7954.000000
s ce10.chrX              4838472 19 + 17718866 ----------GTTTCTTCTGATTCTGATC
s cb4.chrX              10176596 18 + 21540570 ----------TTCTGCTTTTTCC-TCATC
i cb4.chrX              C 0 I 46
s caeSp111.Scaffold409     61063  6 -   201088 ----------TCCACC-------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3088135 13 +  4147112 ----------TTTCTCGTTGGGT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   224784 19 +   591668 ATTTCTTAAATTTCTCTCC----------
i caeJap4.Scaffold17934 I 88 C 0
e caeRem4.Crem_Contig0   1730324  0 -  4500979 C

a score=-510.000000
s ce10.chrX              4838491 8 + 17718866 GGCAAGAA---
s caePb3.Scfld02_0       3088148 7 +  4147112 GGC-AGAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   224803 8 +   591668 ---AAGAAGaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10176614 46 + 21540570 I
e caeSp111.Scaffold409     61069 0 -   201088 C
e caeRem4.Crem_Contig0   1730324 0 -  4500979 C

a score=152186.000000
s ce10.chrX              4838499 1048 + 17718866  
s cb4.chrX              10176660  992 + 21540570  
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   1730324 1051 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold409     61069 1052 -   201088  
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3088155 1057 +  4147112  
i caePb3.Scfld02_0      C 0 I 461
s caeJap4.Scaffold17934   224811 1042 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4839547 2 + 17718866 CA
e caePb3.Scfld02_0       3089212 461 +  4147112 I
e caeJap4.Scaffold17934   225853 0 +   591668 C
e cb4.chrX              10177652 0 + 21540570 C
e caeSp111.Scaffold409     62121 2 -   201088 I
e caeRem4.Crem_Contig0   1731375 37 -  4500979 I

a score=-2774.000000
s ce10.chrX              4839549 21 + 17718866 CGGTTTGTTGTGTTGGTCTGC
s cb4.chrX              10177652 14 + 21540570 -------AGATTATTGACATT
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold409     62123 18 -   201088 ---tttttggttttggagAGC
i caeSp111.Scaffold409  I 2 I 3
s caeJap4.Scaffold17934   225853 19 +   591668 --ATTCGTTTTGCCAGTTGAC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3089212 461 +  4147112 I
e caeRem4.Crem_Contig0   1731375 37 -  4500979 I

a score=-26108.000000
s ce10.chrX              4839570  69 + 17718866 --------TTTCTTTCGCCTTTC-TGAATTGTTCTTTGACGATGGGTGGGGCAATATC---------GGTGACT------------------------ATGCCGGAGCTGG----------
s cb4.chrX              10177667  71 + 21540570 ---------TCCGCAgcgttttcagaaatcgatcGTTGCCGTTTC--GGAACAGTTTC---------AGTGAATGTTGGAAGT--------------------AACTCTTG----------
i cb4.chrX              I 1 I 14
s caeRem4.Crem_Contig0   1731412  95 -  4500979 --------tttcgttttcttttc-gaaatcgGCTGGTTATCCATG--GAAACAAGATCTTGGCAGGAAGAGACTGTTGGGATTGGTGG-----AGGAGATCCAAGATTTGT----------
i caeRem4.Crem_Contig0  I 37 I 14
s caeSp111.Scaffold409     62144  58 -   201088 --------TTTCGT--CATTTTCGAATATAGGATATT--------------CTGGTTC---------GGTCTCCGGTG--------------------ATTCAATGATTTG----------
i caeSp111.Scaffold409  I 3 I 23
s caeJap4.Scaffold17934   225872 118 +   591668 TCATTTTTTCCCGATGTGTCTTT-AGATTCAATTGAAGATGCAGTTTGATACAAAGCTTCGGGTG--ATTGACTCATAGTTTTATTGACCTTCGTAGTATCGCTAATTTCACTGCAGCCAG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3089212 461 +  4147112 I

a score=22601.000000
s ce10.chrX              4839639 158 + 17718866 TTGACGGTTCAT---CTGAT------------------CCAACGGTATTAAGTGCATCGAGAAGCGAATTCAGTGAGGCATTAGAAG---AAACGGTAGTCCAGGATAAACTTCTTGATGGTGGAGGAGCATCTGCTTTTGGCGGATCTACCAGTACATCCTTCGGATGAGAGT-------CCTTCTTT
s cb4.chrX              10177752 153 + 21540570 TCGACGTTTCTG---CAAGTGGAAT------------GTCCACAGCGTTCAGTGATTCCAAAAGATCATCTATTGAGTTGGTTGGCG---AACAAGATTCTGAAGATAGTGATCTCGATGGTGGTAAGTATTCAGGCCTTGGAAGTTCAACGATAACGtcctt------------------tggttttt
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1731521 186 -  4500979 TTGAAATTGTTGGAACAGGTGGATTAGTTGTAGCAGCATCAACAGCATTCAAGGCGTCGAGAAGAGAGTTTAATGAAGCATTGGTTG---AAACCGTTATGGATGTCAAACTTCTTGATGGTGGGAGAGGATTAAACTTCGGAAGATCAACATATACATCTTTCGGTTGAGAATTGCCACGTGGCTTCA
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold409     62225 153 -   201088 TGGTATTTCTAG---CCGGAGAAGA------------GCCAACTGCAGTGAGTGCATCCAACAGAGAATTCAATGAAGCATTAGTAG---AAACTGTTGTCCATGACAATGATCTTGATGGTGGATGGGCATCAAACTTGGGAAACTCGATCAGAACATCTTC------------------GGGTCTCT
i caeSp111.Scaffold409  I 23 C 0
s caePb3.Scfld02_0       3089673 147 +  4147112 TTGTGGCTTCCT---CCGTA------------------CCGACTGCAGTCAGAGCATCCAGAAGTGAATTCAACGAAGCGTTTGAGG---AGAGTGTTTCCCAAGACAACGATCTTGACACTGGGTAAGGACCAAACTTCGGGGGATCCGCAAGAAtatcttt------------------cggttttt
i caePb3.Scfld02_0      I 461 C 0
s caeJap4.Scaffold17934   225990 152 +   591668 ------------------------------TTTCTTTATCTCCTGCAGGATGGTCGTCAAATAAAGAATTGAGCGAAGAAGTGGAAGAACAAGACGAAGTCCAAGACTCGCTTCTAGATGGTGGATGATTACCGAATGTGGGAACATCGATGATGACATCCACTGGTTGAacaa-------tcttcttc
i caeJap4.Scaffold17934 C 0 I 23

a score=-6919.000000
s ce10.chrX              4839797 23 + 17718866 GGTGCTCCAAGTCTTCGAGTCAA
s cb4.chrX              10177905 18 + 21540570 tttgtagaacaTCCTTGG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1731707 23 -  4500979 TATCTGGAgtatcttcaaatttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     62378 18 -   201088 GAT-----CCACTTTCGAATTGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3089820 20 +  4147112 tatt---ACGGTTTTCTCTTGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   226142 23 +   591668 I

a score=93425.000000
s ce10.chrX              4839820 514 + 17718866  
s cb4.chrX              10177923 497 + 21540570  
i cb4.chrX              C 0 I 71
s caeRem4.Crem_Contig0   1731730 519 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     62396 537 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3089840 534 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   226165 517 +   591668  
i caeJap4.Scaffold17934 I 23 C 0

a score=3260.000000
s ce10.chrX              4840334 9 + 17718866 ATCATTTTC
s caeRem4.Crem_Contig0   1732249 9 -  4500979 ACCATTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     62933 9 -   201088 ATCATCTTC
i caeSp111.Scaffold409  C 0 I 21
s caePb3.Scfld02_0       3090374 9 +  4147112 GTCATTGTC
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   226682 9 +   591668 GCTGTTTCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178420 71 + 21540570 I

a score=-3321.000000
s ce10.chrX              4840343 26 + 17718866 TCATCGAGTTGGCGGGTGATTAACGA
s caeRem4.Crem_Contig0   1732258 24 -  4500979 TCATCTGG--GCCGATAGATTTCAGC
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3090389 21 +  4147112 TAATCGGA--GTC---AGATTCTTCC
i caePb3.Scfld02_0      I 6 I 11
s caeJap4.Scaffold17934   226691 20 +   591668 TTGTCGAT--TTCTATTGGTGC----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178420 71 + 21540570 I
e caeSp111.Scaffold409     62942 21 -   201088 I

a score=-2472.000000
s ce10.chrX              4840369 44 + 17718866 TTTCTTCAGATCA-CGAAAC-TCTTCAAGAAGCTTGTTGTGTTGCA
s caeRem4.Crem_Contig0   1732284 43 -  4500979 CTTCTCTATATCACCAATGA-CTTCTATTAAGCTCTTCACATCT--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409     62963 44 -   201088 TCTCTTCAGCTCT-CGATAT-TTTCCAACAAGATCTTTGTGTGAAG
i caeSp111.Scaffold409  I 21 I 12
s caePb3.Scfld02_0       3090421 42 +  4147112 TTCCTTCAAATCA-GAATACGCTTTCTGTAAG---CCTGTGAGAGG
i caePb3.Scfld02_0      I 11 I 38
s caeJap4.Scaffold17934   226711 44 +   591668 ATTTTTTATAGCT-CCATAA-ACACGGAGCAATTCTTTGGGTGGCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178420 71 + 21540570 I

a score=-23255.000000
s ce10.chrX              4840413 47 + 17718866 ------TGCACTTT-----GTGCTGTCATCATTCTC-ATCGCAGCCAATGACTGAC-------CAT
s cb4.chrX              10178491 56 + 21540570 ------CGGATTTAGAAGCTTCACCATTCCCAAATC-TGGATGAGCAATCAGTGACTCAGTAT---
i cb4.chrX              I 71 I 29
s caeRem4.Crem_Contig0   1732327 43 -  4500979 -------------------TTAACTTTTTCCATCTC-ATGATTGTCAAAGAATCCTTTGACAG---
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold409     63019 32 -   201088 ------CGGCTTCA-----TAGTCATGTATTGATTC-------------AAGCGAT----------
i caeSp111.Scaffold409  I 12 I 2
s caePb3.Scfld02_0       3090501 44 +  4147112 ------CAGATTCA-----ATGtcatcttcaaattc-tttccAGTTGAAAAGCTGA----------
i caePb3.Scfld02_0      I 38 I 2
s caeJap4.Scaffold17934   226755 50 +   591668 AACAATGGTCGTCA-----TCGTCATCTCCTGATGCAACAATTGAAAAAGAACGT-----------
i caeJap4.Scaffold17934 C 0 C 0

a score=-8921.000000
s ce10.chrX              4840460 36 + 17718866 -----GTCTTGGTCCTCTTCTTCTTATTCTTCCTCTTTGAT
s caeRem4.Crem_Contig0   1732386 18 -  4500979 -----TTCATTGTACTC--------ATGTTC----------
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold409     63053 20 -   201088 -----GTTG----------------ATGGAGTCTGATGAGT
i caeSp111.Scaffold409  I 2 I 5
s caePb3.Scfld02_0       3090547 30 +  4147112 -----ATCGTCATCCTC------ATATGTTGCCTTACAAGT
i caePb3.Scfld02_0      I 2 I 22
s caeJap4.Scaffold17934   226805 23 +   591668 GAATTATATTCAACATC--------ATATTC----------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178547 29 + 21540570 I

a score=52762.000000
s ce10.chrX              4840496 125 + 17718866 TTGAACTGACGACTCAATAGTTGCAAGTTTTCAGCGGTAAGTTTCTTGAAATGTTCAGTTCCGTCAAGTACCAGAGTTGTTTCCATAGGCTTTGGTTTCCTCTTTCTCATCTTCTTTGTTTTTTC-
s cb4.chrX              10178576 122 + 21540570 TTGAACTCGCGACGTAGTAGAACCAAGTTTTCAGCAGTGAGCTGACTGAATTGATCCATACGATCGAGAACCA---CTGGTTCGACAGGCTTCGGATGCTTTTTTCTCCGCGATCGTGGCTTCTC-
i cb4.chrX              I 29 I 142
s caeRem4.Crem_Contig0   1732404 117 -  4500979 --------ACGTTCCaacaacttcaaattttcagctgtcaaTTTGCTGAAGTGCGCAGTACCATCAAGAACCAATGTTGTTTCCACAGGCGTTGGctttctctttcttcgtttcttctttttctc-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     63078 125 -   201088 TCGAATTCTCTATTCAGTAACTTCAGATTTTCTGCAGTCAACTTGCTAAAGTGCTTAGTGCCATCTAAAACCAGAGTCGTTTCCACTGGCTCCGGCTCCTTCTTTCTGCGcttcttttgttttac-
i caeSp111.Scaffold409  I 5 I 9
s caePb3.Scfld02_0       3090599 125 +  4147112 TCGTATTGACGATCAAATAGTTGAAGATTCGTCTCTGTTAATTGAGTGAAACGGTCCATACCATCAAGAACCAATGTTACTTCAACAGGTTCAGGTTTCTTCTGACGTCTTCTCTTTTGTTTGAC-
i caePb3.Scfld02_0      I 22 I 9
s caeJap4.Scaffold17934   226828 118 +   591668 --------ACGATCCAgtagtttcaaattttccgctGTCAACTTGCTGAGTCGCTCAGTTCCATCCAACACTAGCGTCGGTTCCGGCGTATCTGGCTTCCTCTTTCTCTTCTTAgctcgttttttc
i caeJap4.Scaffold17934 C 0 C 0

a score=-2512.000000
s ce10.chrX              4840621 19 + 17718866 AATGGGTGCTAAAAGAACT
s caeRem4.Crem_Contig0   1732524 19 -  4500979 tGGTTGAGTAGGAAGAGCT
i caeRem4.Crem_Contig0  I 3 I 48
s caeSp111.Scaffold409     63212 19 -   201088 TAACGGTGGTGGCAATGCA
i caeSp111.Scaffold409  I 9 C 0
s caePb3.Scfld02_0       3090733 19 +  4147112 CAATGGAGGCGGAAGAGCT
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   226946  7 +   591668 ---ttttgct---------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178698 142 + 21540570 I

a score=-12368.000000
s ce10.chrX              4840640 87 + 17718866 TCC-TTAGCAGA-----------------CAAATCA------------ATGGCTGGA-----------------------GTCGAAGTTGAAACACCGCTCTGTGGAACTCTGATTGATAGTGGCGTCTTGGCTTTTGGT
s caeSp111.Scaffold409     63231 84 -   201088 GCTGGTAGCGGC---------------TCAGGATCAGGGAGAGCCATCATCGGTGGCA-------------------GAGGTCGGAGT-------------GGTGGAATAGGA------AGtggaattct---ttttctc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3090752 87 +  4147112 GCTGGAAGCGGCTCTTCCTCTTCTGGTTCCGGATCA------------ATTCGTGGAA-------------------GTGGTCGAAGT-------------GGTGGAATCTTG------AGTGGAATCCT---TTTCCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   226953 77 +   591668 ------------------tCTTCTGG-TAGGAATCA------------GTGTGTGACGCACTTGCTTCTTCTTCATCGTTCTCCGAGC-------------TTTCCGGCCTTC--------TAGAATTT-----------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178698 142 + 21540570 I
e caeRem4.Crem_Contig0   1732543 48 -  4500979 I

a score=8668.000000
s ce10.chrX              4840727 27 + 17718866 GGTGGCTTCCATTCGCGTCCTAATCGA
s caeRem4.Crem_Contig0   1732591 27 -  4500979 GGTGGTTTATATTCCCGACCCATCCGA
i caeRem4.Crem_Contig0  I 48 C 0
s caeSp111.Scaffold409     63315 27 -   201088 ggaGGTTTCCATTCGTGACCATGTCGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3090839 27 +  4147112 GGTGGTTTCCATTCCATACCACGACGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   227030 27 +   591668 GGTGACTTCCAGTCTTCTCCAATTCTC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10178698 142 + 21540570 I

a score=23798.000000
s ce10.chrX              4840754 152 + 17718866 GTGTAGTACTTCCTTTGAGATGGCGGGTTGTACGT--TTGCACTCCTTGCGGAACTTCAAGCTGTGGTGGCTTTTCGGGCGAAGG---TTGAGCTGGCCTTGGCAATGA------AGAATCTCCAGAGAGTTGTAATGGCGATGGATCTCCAA------------------TTTTCAA----------------TTG
s cb4.chrX              10178840 171 + 21540570 GTGTAGTATTTCT-TTCTTATTCTGGGTT-CGCTTGACTCGGTTGGTTCTAGAATTTCCATCTGAAGTGGATTTTCAGGTGGTTGAATTTTTGCTGGTTTTGGCATTGC------TCCATCTGTCGAAAGTTTTCGAAGAGTTGGACCAGTTG------------------GTTTGAGCGGTCGTACTCTTCTCTTG
i cb4.chrX              I 142 C 0
s caeRem4.Crem_Contig0   1732618 152 -  4500979 CTATAGTACTTCCGTTGAGACACCGGATTGTACTT--CTGTACTCCTGTTGGGATTTCTAGTTGTGGAGGTGCTTCAGGTGATGG---TTGAGCAGGTCTAGGGAGATT------TGGATCGCCAGAAAGTTGGAGCGCCGATGGAATATCCA------------------TTCTAAG----------------TTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     63342 122 -   201088 GTGTAGTACTTTCTCTGAGACACTGGATCGTATCT--CTGAACTCCTCTTGGTACTTCCAACTGTGGAGGTTGCTCAGGTTCTGG---TTTCGCTGGTTTGGGAAGATC------TTCTTCAATTA---------------------------------------------CTTT-------------------TTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3090866 173 +  4147112 TTGTAGTACTTCCTTTGAGAAACTGGATCGTATGT--TTGAGTTCTTTGTGGAACTTCCAAATGTGGCGGTTCTTCTGGTTCAGG---TCTAGCTGGTTTGGGAAGACTGATGAATTCTCCTGATACAAGAAGGGTAGAGGGTGGCACACCCGGAGGACGGGGTACAGAAGCCTT-------------------TCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   227057 152 +   591668 GTGTAATATCGTCGTTGCGATGGTGATTTGTAGTT--TTTCACCTCTTTTGGAGGATCAAGAATTGGCGGTCTCTCCGGTGACGG---CTTGGCAGGCCTCGGTAAAGA------CGAATTTCCAGACAACTGCAGAGCTGATGGAATACCCA------------------TTTTCAG----------------TTG
i caeJap4.Scaffold17934 C 0 I 873

a score=-107474.000000
s ce10.chrX              4840906 646 + 17718866  
s cb4.chrX              10179011 738 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1732770 832 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     63464 729 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3091039 937 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   227209 873 +   591668 I

a score=23698.000000
s ce10.chrX              4841552 183 + 17718866 ATTGGCTTCCCGTCTACAAATTTCACAATGGC---GCCG-------CTAACCACACATGGCTTCGGAACATCAGAAGTTGGTGACCGTTTGATAAGCTGTCCTGTTTCAGGCTTTTTAATTCTTGGAAGA---ATTGGTGAGCTTCGGTTTGTTTCACTGGTGG-------CTTCTTGGTT--------TTCA---GGA---GAGGGAATAGGGATT
s cb4.chrX              10179749 192 + 21540570 attggttttccatccacaattttgaccatttt---tccgGGCGGAGTCACTGGAGACGAATCTTGGC-CATCTGATGTTGGAGACTTCTTCATTAACGATCCTGTCTcgggttttttgatttttggacgaGCTGGTGGCGACACT---TTTGATTCGTTGG------------TTTTGATTGTGAGCGGTTCC---GTT---GGTTTGATTGACACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1733602 169 -  4500979 ATTGGCTTTCCATCAACAAATTTGACAATCGT---CTCCGGC----TCGATAGGATGTGGTCTCGGAGCATCAGATGTTGGAGATCTCTTCAtcaattttcctgtttcaggttttttgaTCCGAGGAAGA---AGCGGCGATGTT---CTGCCTTCGCT------------------------------CTCC---GTCTCAGTGTTGATAACCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     64193 175 -   201088 ATCGGTTTTCCATCAACAAACTTTACAATCGTggcatcattt----tcaattggagGATGTCTTGGAGTATCTGATGTCGGTGatcttttcatcaattgCCCAGTTTCTGGTTTCTTGATATGAGGAAGA---ATAGGCGACGAC---TTGCTTGTA------------------TCAGCTGC------TTCTTCAGTA---GTGGAGATGG-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3091976 175 +  4147112 ATGGGTTTTCCTCCGACATACTTCACAATAGT---ATCAGCT----TCAGGTGGTGGGTGTTGTGGCATTTCTGAAGTTGGTGACCGCTTCATCAATTGGCCAGTTTCAGGCTTCTTGATGTGAGGAAGA---ACAGGAGACCCT---TTATCTTCAGTGA------------CTTCAGTGGC------TTCT---gtg---atttcaattt-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   228082 177 +   591668 ACCGGTTTCCCATCGACAATCTTCACAATCTG---TCCGGTA----T---------GTGATTTTTGTGatggttgtttttgttttcttctcGCCAATTGTCCAGACTCTGGTTTTTTAATGCGAGGAAGA---AGTGGCTCTCCT---CCGCGTCCATCAGGGGAAGTTTCATGTCTAACTGG------CTTA---AGA---ATTGGAATT------
i caeJap4.Scaffold17934 I 873 I 587

a score=-7200.000000
s ce10.chrX              4841735 111 + 17718866 GATGAACTTTCGGCTG---------TTGATGAAGTCATTTTCTTTTCTTTTTTTCGTCCAAATAATGCAGTGAA----AATTG--------ATGC----AGATGGTTTTTTC--GCGGATCCTGGTCCTTGCTGATTC--
s cb4.chrX              10179941 118 + 21540570 GGTGCAGTTTctgatggtttgggtggcgGTGGTGGCG---------CTCTTTTCTTTCCAAACAGAGCTCTGAA----GAATTCCGGT---TTCTCGGCAGTTGTTGGTGTC--ACAACCGGAGGCTTAGG--GATTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1733771  96 -  4500979 -------------------------GAGGTGGTGGTG---------CTTTTTTCCGTCCAAACAGCgcagtgaaaaatgaatttctttcTACTCTTGG-GGTTGGCGTTGTT--GTTATTGTAGGCAT-----GATTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     64368  80 -   201088 -------------------------AGAGTGGTGGAA---------CCTTTTTGCGGCCAATAAGAGCACTAAA----GAACG--------ATCT----GGCTGGTGTCGAT--GCTGGTT------TTTG--AACTGGT
i caeSp111.Scaffold409  C 0 I 153
s caePb3.Scfld02_0       3092151  92 +  4147112 -------------------------gaagtGGAGTTG---------TTTTCTTTCGTCCGAATATTGCCGAAAA----GAATG--------ATCTTGGCGGCGGGTTTCGTTTCACTGGCTGAGGAGTTTG--AGGAGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   228259 587 +   591668 I

a score=-13679.000000
s ce10.chrX              4841846 82 + 17718866 ---------------------------GAAGAAGATGAAGCTTGATCATCCAAAGTCAC--------GTTGGTA---CTAGGCACCACTTTCTCATTCTTTTTGCTTT---------------CTTGCTCCTTTT
s cb4.chrX              10180059 78 + 21540570 GAGGA-------CCAGTGATC---CCAGGAGTATTT----CTTGTTATTGGAGCTTTGG----AAATGAAGGAG-----GG-------------------Tttgtctt---------------cttccttcttct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1733867 99 -  4500979 GAGTAGTTGGTGCAGGCGGCTGAGCCGGTGGTACTTG--GCTCGTAGATGGAACGTTATCATCAGATTTTGGTGAAtttgg-------------------tttggttt---------------gtttcctctttt
i caeRem4.Crem_Contig0  C 0 I 171
s caePb3.Scfld02_0       3092243 85 +  4147112 ------------GAAGTGCTT--GGCTGAGGTTTTT----CTGGTTCTTCTACTGTTGT-------TTCCGGTT---CTGG-------------------TTCTGCTTCGGGTGGAGGGACCGGTTCACTCT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64448 153 -   201088 I

a score=-1869.000000
s ce10.chrX              4841928 29 + 17718866 ---GAGGACCTTTTGGATCTAACGGTTTGACA
s cb4.chrX              10180137 27 + 21540570 cagTGGGTGTTGAAGGTTTGAGTTGCG-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3092328 29 +  4147112 ---CAGGTTCTTGGGGAGGCAATGCCATCACA
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64448 153 -   201088 I
e caeRem4.Crem_Contig0   1733966 171 -  4500979 I

a score=-212.000000
s ce10.chrX              4841957 46 + 17718866 ACTTTTGGCACAGAGCGTTTTTCCTGTACACTTTGTAATTTAGG-----CC
s cb4.chrX              10180164 50 + 21540570 GCTTCTCTTTCGAAATGTTCTTCC-ATGGGCTTTCATCTCCAGAAGAATCC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3092357 42 +  4147112 I
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64448 153 -   201088 I
e caeRem4.Crem_Contig0   1733966 171 -  4500979 I

a score=-1734.000000
s ce10.chrX              4842003 29 + 17718866 ----GAGATTGGACG--------TCTGCCTGTTTCTGAGAC------------
s cb4.chrX              10180214 53 + 21540570 GATGCGAATTGCACAGGCGCAGGTTTTCCTCTTGTTGGAAGTGGTGCTGTTGC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3092399 24 +  4147112 GAGGTAGATTGTcca--------ttttcctcc---------------------
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64448 153 -   201088 I
e caeRem4.Crem_Contig0   1733966 171 -  4500979 I

a score=-14499.000000
s ce10.chrX              4842032 94 + 17718866 --TTTCCAGAAGAAGATGAAACATTTCTGGAAGCTTCACTTTTTGTCAATTCGGATTCGTGCAGCTTTTGAGTAGCA-GGCCTGATTGA------------TGCAGCTT--------
s cb4.chrX              10180267 93 + 21540570 TTTTGGTACAGAAACCGG-----TGCCTGGTAT-----CCTTTAGTCGT----------TGTGACTTTC--GTTGCA-ATCATTCTTGTGAGTAGAGTAGGTGCCGTTGAT-GGTCC
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold409     64601 70 -   201088 --tcatcagaagaatcaga---atacCAGCTA----------TGGACAC---------------CTTTC--CGAGCG-GTTGTTTTGGG------------TACAATTGGC-GATT-
i caeSp111.Scaffold409  I 153 C 0
s caePb3.Scfld02_0       3092423 55 +  4147112 --tcttcagaTGAATCAGA---ATACCAGC-------------------------------------TT--GTAGTGTGTCGTTTTTGT-----------------TTGGCTGGCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeRem4.Crem_Contig0   1733966 171 -  4500979 I

a score=-1121.000000
s ce10.chrX              4842126 100 + 17718866 TTGGAGTGATCGGAGGTGGTGCTGTTGCCTTTGGTTTT------GCCACTGGTGTTTTATATTCTTTCTGTTCGGATTTTTTAGCTGCCGCCATTCTTGTTAGTTG------------------
s cb4.chrX              10180363 105 + 21540570 TTGACTTGGTGACTCAATTGGCTGTTGCGTCGGTGACTTCCCTGGCTGCTGTCCTGATG---------GtgacttcaaaatttgttgaGCT--GTTGACTTTGTTG-------TCAGTTTA-GA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1734137 118 -  4500979 TTGGATTAGTCGGTGGAGGAGCTGTAGCTTTTGGAACT------GCTACTGGTTCAGTGTAGGTCTTCATCACATGAGATTTTGAAGCACTCATTCGAGGTAGTTGGGCAGGAGCAGTGGACGG
i caeRem4.Crem_Contig0  I 171 C 0
s caeSp111.Scaffold409     64671 100 -   201088 TCGGTGTCACCGGTGGTGGCCCAGTGGCTTTTGGCTTC------GCAACTGGTTCTTCGTAGACTTTGTTCTCTTTGACTTTTGTGCCAGCCATTCTTGGTAATTG------------------
i caeSp111.Scaffold409  C 0 I 132
s caePb3.Scfld02_0       3092478 100 +  4147112 TCTTTACGACTGGTGGTGGAGCAGTAGCTTTTGGTTTT------GCAACCGGATCCCTGTAGCCTTTTTTATCGTGAGATCTAGTTCCAGTCATTCTTGGGAGGTT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   228259 587 +   591668 I

a score=1680.000000
s ce10.chrX              4842226 6 + 17718866 TACAGG
s cb4.chrX              10180468 6 + 21540570 TTCGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734255 6 -  4500979 TCCAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3092578 6 +  4147112 TCCAGA
i caePb3.Scfld02_0      C 0 I 178
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64771 132 -   201088 I

a score=-6086.000000
s ce10.chrX              4842232  78 + 17718866 TTCTGG---------------------------AGTGGAATGTGAAACC--ACCAACGCTGGTTGTACCCTAGTC-GTCGAAGCAGACTCTTGAATGTTTGAAG----------------------CTTC
s cb4.chrX              10180474  77 + 21540570 CGCTGGTCTATCCTC------------------------AGATGAACGCTTGACAGTAATCGCTGCAGCT--GTTAGTTCGATTGGGTCCTTCTTTgtc---------------------------tgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734261 128 -  4500979 TTCTGATTCATCGGCCCCTTTGTACAAGGTTGGAGTAGAAGATGAAGCGGTATCGGCATCTGCCTTAGCTCCATCAGTTGAA--GATTCCTGTTTTGTCTTGTCCTCGGCACCATcctcactcttttttt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3092584 178 +  4147112 I
e caeJap4.Scaffold17934   228259 587 +   591668 I
e caeSp111.Scaffold409     64771 132 -   201088 I

a score=-1248.000000
s ce10.chrX              4842310  9 + 17718866 ---------------------CTTCAATGA
s cb4.chrX              10180551  4 + 21540570 ---------------------cttc-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734389  4 -  4500979 ---------------------cttc-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     64903 25 -   201088 CTCCGatgactctttttctttcttc-----
i caeSp111.Scaffold409  I 132 C 0
e caePb3.Scfld02_0       3092584 178 +  4147112 I
e caeJap4.Scaffold17934   228259 587 +   591668 I

a score=-5768.000000
s ce10.chrX              4842319 22 + 17718866 -TTCAGTTTTC-----GAAAGAGCCGAT-----------
s cb4.chrX              10180555 10 + 21540570 -ttcttttttc----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734393 10 -  4500979 -ctttttcttg----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     64928 15 -   201088 -tttttctttgccgAT-----------------------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   228846 22 +   591668 TTTCGTACTTG-----------------ATGGCGACGAT
i caeJap4.Scaffold17934 I 587 C 0
e caePb3.Scfld02_0       3092584 178 +  4147112 I

a score=53719.000000
s ce10.chrX              4842341 98 + 17718866 GGTGGCTTTACAAAAACAGGCTTGCTGGCACCCATATATCTTCGAGCCATCATCGCTGCCCTCCACTGTTGATCGGCTGGCATTTTTGGTGGTGGAGC
s cb4.chrX              10180565 98 + 21540570 ggcGTTTGCGCATACACTGGTTTGCTGGATCCCATAAACCGTCTTGCCATCATTGCCGCTCTCCATTGCTGGTCTGCAGGCATTTTTGGTGGTGGTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734403 98 -  4500979 gCCTGTTGAGCAGAAACTGGTCGACTCGAGCCAACATATCGCCGTGCCATCATTGCTGCTCTCCACTGTTGATCTGCAGGCATTTTTGGTGGTGGAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     64943 92 -   201088 ------GGAGCAATCACTGGTTTTGATGCTCCAATGTACCGTCTTGCCATCATTGCAGCTCTCCACTGTTGATCAGCAGGAGCTTTCGGTGGTGGAGC
i caeSp111.Scaffold409  C 0 I 180
s caePb3.Scfld02_0       3092762 98 +  4147112 ggtGTTGGTGCGGCGACTGGCCGAGAAGATCCCATGTACCGTCTCGACATCATTGCTAATCTCCACTGCTGATCTGATGGCAGTTTAGGTGGTGGCGC
i caePb3.Scfld02_0      I 178 C 0
s caeJap4.Scaffold17934   228868 95 +   591668 ---GAATGATTTATAGTATTCCTATTGCTTCCCATGTTTCTCCGTGCCATCATCGCAGCTCTCCATTGTTGGTCAACTGGAAGTTTTCCTGGGGGAAC
i caeJap4.Scaffold17934 C 0 C 0

a score=-37226.000000
s ce10.chrX              4842439 142 + 17718866 AGGAAC------CGAAGCGGCAGGTGGAGTCAGAGGTGAAGGAGTGTCAACTT--TCTCGACGGGT----ACTTTTTCT-------------------------TCCGATTCAGCCGACAATGGTCGAAGGAGACGA---ACAGGCGGCGAGGGTG-------TTGGTTCAGGAGTT---TCCTCTCTTGGT
s cb4.chrX              10180663 129 + 21540570 ------------TGGAGCAGCAACC---------------------TC--TTT--CTGCGTCGG-------CGTTTCCTCATCACTGCTATCACCAGGTCTT--GAAGATTCTGGCGTGGCTGCCTGGGATCGAATAGTCACTGGCGATGATGGTG----ATCTTGATTCGGAACGC---TC----------
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig0   1734501 133 -  4500979 ------------CGGTGCAGGAATCAAG---------GAAGCAGGATCGATTT--CCGCTT----------cgttttct----------------ggattttcagaattttctggaacAACTGGCCGCAAAAGACGA---ACTGGAGAATTTGGTG----AGTTTGTATCTGATCGG---TCCTCTTTAGGA
i caeRem4.Crem_Contig0  C 0 I 18
s caePb3.Scfld02_0       3092860  88 +  4147112 ---AATCATTGGTGCGGCGGCAGCC---------------------TC--TTTAACCTCGTC---------AATTTTCT---------------------GT--GGAGTTTCAGGAATAGAGGGT------------GCTACTGG-----------------TTTGA----GAATCG---TC----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   228963 146 +   591668 ------AATAGTTTTTGCGGGAGAT---------------GTTGCACTGGGTT--CCTTGGAGTTTAAAGAAATTCCCG---------------CGGATTGT--AAGGGTTCAG---CAACTGGTTTGAGAAGTCGA---AGCGGCAAACGAGTTGGCCAATATTAATTTATCATCGATATCAACTACCAGT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     65035 180 -   201088 I

a score=-2915.000000
s ce10.chrX              4842581 20 + 17718866 GGAGACACGGGCACGGGAGC
s caeRem4.Crem_Contig0   1734652 11 -  4500979 ---------GGAAATAGAAC
i caeRem4.Crem_Contig0  I 18 I 7
s caePb3.Scfld02_0       3092948 20 +  4147112 AGAGGCCCAGAGAAAAGCAA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   229109 16 +   591668 GGTGTATCTGGTCTGG----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10180792 49 + 21540570 I
e caeSp111.Scaffold409     65035 180 -   201088 I

a score=-6743.000000
s ce10.chrX              4842601 51 + 17718866 TTGT-TGAACAGGTGCAGTGTTTTCCTTAACTT-----TTTTCTCA-------CCCTTCGAATT
s cb4.chrX              10180841 44 + 21540570 TTGAGTGCACG----------TTCCTTGGCTTTAATcctctcctc----------tttttcttt
i cb4.chrX              I 49 I 5
s caeRem4.Crem_Contig0   1734670 38 -  4500979 TTGA-TGGata----------cttctttctctt-----tctcttc----------tttagaTTT
i caeRem4.Crem_Contig0  I 7 I 6
s caePb3.Scfld02_0       3092978 23 +  4147112 TTGA-----------------TTTCAGGAACTT-----TTTCCTC-------------------
i caePb3.Scfld02_0      I 10 I 2
s caeJap4.Scaffold17934   229125 47 +   591668 -TAT-TGACCT----------CTTTCGTAACAT-----TTTCCGTGGTTAtttcttttccattt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     65035 180 -   201088 I

a score=1312.000000
s ce10.chrX              4842652 28 + 17718866 -------TTTTCTTGTGTTCGTCAGCCATGTATTC
s cb4.chrX              10180890 23 + 21540570 ------------TTGCATCGTTCAGCCATGGGTTT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1734714 28 -  4500979 -------TTTCCGTGTGCTGGTCAACCAGTTACTC
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409     65215 28 -   201088 -------TTTTGGTGTGTTGGTCAACCAAGTATTT
i caeSp111.Scaffold409  I 180 C 0
s caePb3.Scfld02_0       3093003 26 +  4147112 -------TTTTGGTGTCT--GCTGGcgatgtttct
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   229172 35 +   591668 tcttcaaTTAAAGAATTTTCCTCTGGCACGTTTCC
i caeJap4.Scaffold17934 C 0 I 8

a score=-4117.000000
s ce10.chrX              4842680 22 + 17718866 TTGAGAGGCGACGAATCGTCCA
s cb4.chrX              10180913 22 + 21540570 TTGATGAGTGAAGGTTTTGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734742 22 -  4500979 TTGTTTAGATGAGAATCCGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     65243 16 -   201088 TGATGGATAGAAGGAT------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3093029 19 +  4147112 ttttgaggAGTAGATTCC---T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   229207  8 +   591668 I

a score=-8542.000000
s ce10.chrX              4842702 23 + 17718866 -ATTCTAGAAGCGACGGAACAGTA
s cb4.chrX              10180935 14 + 21540570 -TGT--------GAAGGAACGCC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734764 22 -  4500979 -TATCCAAAAACGAGGGGACATC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     65259 20 -   201088 ---T-CAATAACGATGTAACAGGA
i caeSp111.Scaffold409  C 0 I 12
s caePb3.Scfld02_0       3093048 22 +  4147112 -TAT-CTCCAACGCTGGAAGAGAT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   229215 19 +   591668 ACTT-TAACAGCTTCGGGAC----
i caeJap4.Scaffold17934 I 8 C 0

a score=-4933.000000
s ce10.chrX              4842725 15 + 17718866 AAAGAAGTTTTTGGA
s cb4.chrX              10180949  9 + 21540570 ------GTTGGTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734786 13 -  4500979 --TGAGATGGGTGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3093077  6 +  4147112 ---------GAAGAA
i caePb3.Scfld02_0      I 7 I 3
s caeJap4.Scaffold17934   229234 13 +   591668 --GGATTTCTCTGAT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     65279 12 -   201088 I

a score=-3204.000000
s ce10.chrX              4842740 62 + 17718866 ---GGTGAGGTTCCAGCCAA---C------GAATGTGCACTTGTCTTGACAAGC-----TTCAGTGTTTTGTTGGATCC
s cb4.chrX              10180958 65 + 21540570 ---GGCGACTCGCGTGCAGAACTG------GGCTCCGACGGAGGTTTGACCAAT-----GTGAGAGTTCCACCAAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734799 62 -  4500979 ---GGTGATCCCTTATCAGA---G------GCGCTCGCTGCTTTTTTAACCAGA-----GTGAGAGTCTTGTTGAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     65291 65 -   201088 ---GGTGATTTCTTGGCTGCCTGT------GTACTCACTGGCGGCTTAACCAAT-----CTAAGCGATTTGTTCATTCC
i caeSp111.Scaffold409  I 12 I 33
s caePb3.Scfld02_0       3093086 71 +  4147112 ---GATGATTCTCTATCTGGTAGTGATGGGGAACTGGTTTGTTGCTTGATGAGT-----CTCAAAGGTCTGTGGAATCC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   229247 57 +   591668 TTTGGCG----------------T------TTGTGCATCGGCTCCTTGAAAAGAACTAGTTGAAGATTGTATAGGTTCA
i caeJap4.Scaffold17934 C 0 C 0

a score=-4625.000000
s ce10.chrX              4842802 30 + 17718866 -AGCACTAGAAGTTTTG-------CCATCAGGA---GATTG-
s cb4.chrX              10181023 30 + 21540570 -AAAGAACGTTTCCTTG-------GTATTCGTG---GGTTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1734861 30 -  4500979 -AACGAAGTTGTCTTTA-------GTCTCCGCA---GGCTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3093157 33 +  4147112 -GAGAAAagcttctttc-------ttctcctctttcggCTC-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   229304 39 +   591668 TGAAGTACAAGTCCTTGATTCATTTTCTCCACT---GGATTT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     65356 33 -   201088 I

a score=29518.000000
s ce10.chrX              4842832 84 + 17718866 AGAGTTAAATTTCATAGAACGATG---TCCTTGCCCAC---GTTTCAAACACGACTTGAGGTTGTTGGATGGTTTCACCACAATCTCAAT
s cb4.chrX              10181053 87 + 21540570 CGAAACAAACTGGAGTGTACGACG---TCCGGCTCCACTTTGTTTGAGACATGATTTCAGATTGGTTACTGGCTCGACAACGATTTCCAG
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   1734891 84 -  4500979 AGAAGCAATGTTCAGTGAGCGTCG---ACCAACTCCAC---GTTTCAGACATGGTTTCAGATTCTCTGTTGGTTCCACAATTACTTCAAC
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold409     65389 84 -   201088 AGAGGCAAACAGAAGTGAGCGCCG---TGATCCTTCTC---GTCGCATGCACGGTTTCAAGTTTTCGGTTGGTGCCACGACGATTTCCAA
i caeSp111.Scaffold409  I 33 C 0
s caePb3.Scfld02_0       3093193 84 +  4147112 AGATGCAAAAACTAGTATGCGGcg---tccttctcttt---tcttcatacTGGATTTCAAGTTCGGAGTTGGTTCTACCACAATTTCCAG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   229343 86 +   591668 -GAAAAAAGATTCAGCACGCGGCGGGCTGCATTGCCAC---GTTTCAAACAAGACTTGAGATTCGGAGTAGGTTCCATCATTATTTCCAC
i caeJap4.Scaffold17934 C 0 C 0

a score=-185.000000
s ce10.chrX              4842916 16 + 17718866 AGATTTCTCTTTGGTT
s cb4.chrX              10181154 16 + 21540570 TATTCTCTTTATCATT
i cb4.chrX              I 14 I 3
s caeSp111.Scaffold409     65473 16 -   201088 TAGTTTCTCAGGCGCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3093277 16 +  4147112 TAATCTCTCATTTGGG
i caePb3.Scfld02_0      C 0 I 48
s caeJap4.Scaffold17934   229429 16 +   591668 TGTATGCTCGTCACTT
i caeJap4.Scaffold17934 C 0 I 3
e caeRem4.Crem_Contig0   1734975 30 -  4500979 I

a score=573.000000
s ce10.chrX              4842932 2 + 17718866 TC
s caeSp111.Scaffold409     65489 2 -   201088 TC
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   229448 2 +   591668 TC
i caeJap4.Scaffold17934 I 3 C 0
e caePb3.Scfld02_0       3093293 48 +  4147112 I
e cb4.chrX              10181170 3 + 21540570 I
e caeRem4.Crem_Contig0   1734975 30 -  4500979 I

a score=-915.000000
s ce10.chrX              4842934 46 + 17718866 CATATCTTCCTGCTGCTT---TGGTCTAATCTTCTTAAAATCGCTCAAT
s cb4.chrX              10181173 40 + 21540570 ---CGTTTCGCTTGGGTT------CTTCGGTTTTCTCAAGTTGCACAAT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1735005 43 -  4500979 caaatttttcttcttctt------tttcaaacgtTTCAGATTACTCAAT
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold409     65491 49 -   201088 AGCTGCTTCACACTGCTTGTCTTGTTTCCGCTTCCGCATAGTCGTCAAA
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   229450 43 +   591668 TGTAAGTTCTTtcatttt------cttaattttttgcatactGTCTAGT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3093293 48 +  4147112 I

a score=41328.000000
s ce10.chrX              4842980 75 + 17718866 CGTACCCGCTTGATGTTAACATTATAGTCAGCAAGTTTTCGAAGCATTTGTTTCCATGGCATAGGCTGAAGTTTG
s cb4.chrX              10181213 75 + 21540570 CGGACTCTTTTGATGTTGACATTAGACTTGTCCAGTTTCCGGAGCATTCGAGACCATGACATAACTTCGGGTTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1735048 75 -  4500979 TTGATCCTTTTGATGTTGACTTTGTAGTTGGCTAATTTCCGAAGCATTTGTCTCCATGACATCGGTTGAGGTTTG
i caeRem4.Crem_Contig0  C 0 I 142
s caeSp111.Scaffold409     65540 75 -   201088 CGTATTTTCTTGATGCTGACTTTTTGATCCGATAGTTTGAGAAGCATCTGTTTCCAAGACATTGGCTCTGGTTTT
i caeSp111.Scaffold409  C 0 I 16
s caePb3.Scfld02_0       3093341 75 +  4147112 CGAATCCGTTTGATGGTGACCTTGTAGTTGGCCAGCTTCTGGAGCATCTGTTTCCAGGACATTGGTTTAGGTTTT
i caePb3.Scfld02_0      I 48 C 0
s caeJap4.Scaffold17934   229493 75 +   591668 CGAACTCGGCTAATTTTGACATGATAGTTGGTCAGTTTTTTCAGCATCCGATGCCAAGACAATGTCGGAAAATTA
i caeJap4.Scaffold17934 C 0 C 0

a score=-799.000000
s ce10.chrX              4843055 13 + 17718866 GTAGTATTTTTTG--
s cb4.chrX              10181288 12 + 21540570 -GCATACTTCCTG--
i cb4.chrX              C 0 I 630
s caeRem4.Crem_Contig0   1735265 13 -  4500979 TTAGCAATTTCTG--
i caeRem4.Crem_Contig0  I 142 I 35
s caePb3.Scfld02_0       3093416 13 +  4147112 TCAGtatcttcct--
i caePb3.Scfld02_0      C 0 I 60
s caeJap4.Scaffold17934   229568 15 +   591668 CTCGTCTTTTTAATG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     65615 16 -   201088 I

a score=-7745.000000
s ce10.chrX              4843068 51 + 17718866 --------------CTTTCACATTTTTCTTATACTTCTTTCGTG---AACGAATTCCCTTCTTCGATC
s caeRem4.Crem_Contig0   1735313 41 -  4500979 --------------ATttcac-ttcttctgactcatcttcaaca--------tttttcttct----ct
i caeRem4.Crem_Contig0  I 35 I 90
s caeSp111.Scaffold409     65631 41 -   201088 --------------ctttttc-tgattcttgtTCGACTTCATCG------AGCTCTGCTTCT------
i caeSp111.Scaffold409  I 16 I 34
s caePb3.Scfld02_0       3093489 53 +  4147112 --------------ctttttc-ttctacttgctcctctttctcttcggacagctcctctttttcaacc
i caePb3.Scfld02_0      I 60 I 211
s caeJap4.Scaffold17934   229583 32 +   591668 CTCAAAGAAGCtgcattcaat-tttttcctggA-----------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10181300 630 + 21540570 I

a score=40374.000000
s ce10.chrX              4843119 251 + 17718866 TTCGCAAAGG----------------------CTTCCAAGGCTTCAAG------------------------AACATGTCAGAAA-----TTTTCG-CATCTATTGGCTGTTCGTATTTCATCCTGTGATTTTTGCCCTTTA-ATGAATCATTCTTCCGAATAGTGTTCAGAACTCTCGACCGTCTTGGCTCCTTGTGGAGAACTTTCCGTTGTCTTGTGAAACGCTTGGATCTCATATGCTGGAATCGGAATTGAGATGCCGCGCGACTATCTTTGCGATCAGTTTCATGATCAGTTGGTAGC
s cb4.chrX              10181930 243 + 21540570 -----GGATG-------------------------CCATGGTTTCAAG------------------------AACAAATCCGTAT-----ACTGTG-GTTTCATTTCTTCCTCGTGCATCATCATGAAGTTGTTGTATTTCG-TTCCTTGGATTCTTCTAATAGCGTTCATAACTTTTGACCGAGTCGGTGCACGATGAAGAGGTTTGTGAGCGATCATAAGTTGTTTTGGTCGCATGTGTTGGTTTTTGAAGCCAGATTCAGACTCCTGCTCGGACTTTCCCGTTTCGTGATCAGTCGGTAGC
i cb4.chrX              I 630 C 0
s caeRem4.Crem_Contig0   1735444 303 -  4500979 tttttggatgttttggactttttctttttctttctctctggTTCCCAGTATGTTGGAAGTGATTCATGTGGATACAAATAGATATCAGAAACTTTGCGATTCATTGGTTCCTCACACATCATCA-ATTGTTTCTGTCTCTCGAGTTCACTGATTCTCCGAATTGTGTTCAGAACTTTCGAGCGAGTTGCATCGTGATGAAGAATTTTCTGAGATCTAGTGAATCGTTTATACCTCATGTGTTGTCGTTGGTAACAAGATTCACTTTCCCAATCAGCGGAGTCAGATTCATGTTCAGTTGGATAC
i caeRem4.Crem_Contig0  I 90 C 0
s caeSp111.Scaffold409     65706 251 -   201088 ATAAAAGAGG----------------------TTCCCATGGATTCAAG------------------------AACAAGTCTGTGA-----TTTCTG-GGAGCATCGGTTTCTTGTACTTCATCTTCTGATGTTTTTCCTTCC-GACTATGAAGCCTCCGAATCGTGTTCAAGACTCTCGAACGAAGTGGTTCCAAATGAAGaatctttcgttttcttgaGTACCGCTTGAATCTCATATGCTGGAACTGGTAGTGGCTCTCTGATTCCATTTCACTTCTGACAGTTTCGTGATCGGATGGTAAC
i caeSp111.Scaffold409  I 34 C 0
s caePb3.Scfld02_0       3093753 251 +  4147112 CTTTCAATGG----------------------TCTCCAAGGTCTTAAG------------------------AAGAAGTCTGTGA-----TCTTTG-GAATCATTGCTTTCTCGTATTCCAGGTCAGAGtggtctttttctt-ctttcttgattCGACCAGCTGCGTTACGTACTCTCGAACGACGTGGTATCTTATGAATAATCCTACGCTTGCTCGGATAACATCTCGGCCTCATATGTTGGCGACTGAAGTGAGTAGGATTCTCGAGAGCACTGTCATCTGTCTCATGATTGGATGGATAC
i caePb3.Scfld02_0      I 211 C 0
s caeJap4.Scaffold17934   229615 238 +   591668 ----GAGAGG----------------------TATCCACGGATTAAGA------------------------TGAAGATCAACCA-----ATTTGG-GTGTAATGGGCTTCTCACACATCATTTCTTTATTccgtttttctg-tttctttgAGCTTTCGAATTGTGTTCAAAACTCTAGAGCGAGTAGGAGCGTGATGCAGCACTTTTCGTCTTTTGGTGAAATGTTTCTGCCGCGTGTGATTTCGCCCATACAGAAA---------ACAGTCATTACCATCCGCTTCATGGGAATTTAGAAGC
i caeJap4.Scaffold17934 C 0 I 717

a score=5723.000000
s ce10.chrX              4843370 8 + 17718866 CAACGAGG
s cb4.chrX              10182173 8 + 21540570 CAGCGAGG
i cb4.chrX              C 0 I 1266
s caeRem4.Crem_Contig0   1735747 8 -  4500979 CAGCGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     65957 8 -   201088 CAACGTGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3094004 8 +  4147112 CAACGTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   229853 717 +   591668 I

a score=-5559.000000
s ce10.chrX              4843378 56 + 17718866 ATGCAATGGTCGTTGGTGGTGAATCCCTGGTGCACGCGATGAACGGC-------GATTGTGGA-
s caeRem4.Crem_Contig0   1735755 53 -  4500979 TTGGAATGGGTGTTCCGTGTGAATTCCTCTAGCTCGGGATCGCCGAA----------TTTGGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     65965 63 -   201088 TAGAAGTGGACGCTGCGCATGCAATCCTTCGGCGCGTGATGATTGGATCAACTTAGCTTTGGC-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3094012 47 +  4147112 TCCAAT-----------------AGCCTCTTCTGTGTTGTCTTCAATAAAACGCCGCTTAGGGA
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=-2407.000000
s ce10.chrX              4843434 39 + 17718866 C-TTTGTTCTTTAGGAATTTCC------TTTCC---AGCTGCAATTCCG-----
s caeRem4.Crem_Contig0   1735808 42 -  4500979 --TTAGTTTCATCGTGAATTCT------CGTC----GAATACAGCTCATTTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     66028 49 -   201088 CATCGATTTTGCAAGAGATGCTTTCACACGTTTTGAGACCGCAATTCCT-----
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3094059 38 +  4147112 I
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=-17942.000000
s ce10.chrX              4843473 313 + 17718866 ----TTGATTTCAGCGGCGACAAA-------------TCTTT-------------------------TTCCGATT-------TTTTAGTA----------GACACT------------TTTGCAGATTTACTTGGAAGGGCCAC--ACTTGTCTCCAATTGA-------------GATTTTGGTTTCTGATCTGATGGTATGACTTCTGGTTTGGAATCATCCGGCTTCGTGACCTTT--------TTCGACTTCTCCTTTTGAATTGATC------------------------TACACTTTCGAGCAATTTTCTTCAATGCTTTTCTGTAGCTACTTCCCTTATCCACAGAAAATGACCGGCACGCCGGCATTTGCTTCCGAAGTTTCCTGCTGTGTGGAATCATGGTAGACTTTGATCTTAC------AGCAAC
s caeRem4.Crem_Contig0   1735850 364 -  4500979 GAAGTTTGGACcccttgaa------------------ttttttcaacgtCTTAGTT-----------CTCTTGACAG-----ACTTAGCA----------GATGATTCCAgtaagaaatttgaaaatg---ttggagCAGCCACTGAGTTTTCACTAGTTTCCAAACTGGACTC-CGAGTCATTTCCAG--CTGAT---TTATCGACTGTTTT---ATCTTGTGCACT--TGGCTCCTGAACCAAATTAGTTGCAGCCACTTTTGCTTGCCGTTTC---TTCAACAAATCACGGTTATGCTTTTTAGCGagttttttcacaactttGGCATAACGGCAGCCAGTATCCACAGAAAACGAACGTCTCGTCATTATCTCCTTCGGTGATTTCTTAACGTAAGGTGCCGGAGTAGAAGGTGCTCTTGT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     66077 347 -   201088 ----CTTGCTTTGTTTGGATCACG-------------------------------------------TGCCGGGTAAGG---GTCTAGCG----------GGCGTTTGCGGGAGAATTTCTTGTAATT---AGAGAA-ACTAAATGAATCTTCAGAGGTTGATAGTGTTCCCTCTATTTTCACTGtc------------acatcttctttttcgggACTTTCTGCATTAGTCAAGCCT--------TCCCTCTTAGCCTTTTCTGCCTCACGTTTACTTCTCTTCACAGCTTTCTTATGGGTATGAGCAAGAATCTTCAGAGCCTTTTTGCATTTTGATCCTGAGTCGACAGAGAAAGAACGGGCGATAGGCATCTGATCACGAGATTTCCTTTTTACTGGAAGTGGTGCAGACCGTGCACGTTCTGGAAT------
i caeSp111.Scaffold409  C 0 I 126
s caePb3.Scfld02_0       3094097 386 +  4147112 ----TTGACTTCTCTTGAAACAGGGAtgtatcttctttttctccgaaGTCGTTTTTTGGGAATAGAATTCGGGATGACGCCAGTCTGCTGTTCCCGTAGAGGGGCTTGCTGGGAAACGTCATTTGATT------------CCAAGGAGTTTTCAGAAGACGA-------------AGATTCGTTGTCGG--GTGATGGAGTATCTCCTGCTTTTTGTTCATCAGAAGTGGTGATTTTC--------TTAGTTGCAGCCTTCTTAGCCAACCGCTTCTGTTTTTTGACTGCCTTTTTGTGTTTATGGGCGATGACTTTCAGAACTTTCCTGAATCTTGTTCCAGAATCGACAGAGAAGGAACGGCAAAGCAATTTCTCATCTTTCACTTGTCTTTTATAGGGCAACGGCGCTGATTTTGCACGTGT------------
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=-5312.000000
s ce10.chrX              4843786  87 + 17718866 TGATGGTT--GTTTGC---TTGAAGAACGATCCATTTTCATTC------CGTCGGAATCAATA--------------CTAT--------------TAGAAGAA---------TTTGAATTGGTCGTGATCTTGTG-
s caeRem4.Crem_Contig0   1736214  93 -  4500979 TGGTGAGC--GTTTCT--------------cacgttttttctcttt---cttcgcAGTGGATT--------------TTATGACATTCGTCTCTGCAGAAGTT---------TTTGTGTTGACGGTGACTTT-CGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3094483 134 +  4147112 CGGTGGACAAGTTTCTACCTTCGGCTCCACtatcttctctttcttttgactttttagcagctttcgttcctttctcattttcgcgatctcttcttcATTGGTTACGATTGGGATCGAGTTGGTGGTTTCCTT-CG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I
e caeSp111.Scaffold409     66424 126 -   201088 I

a score=-44356.000000
s ce10.chrX              4843873 315 + 17718866 CTCTTTTTGTCGGCTTTTTCTAGGCAGCTG---GCAAC-------------------TTGATGGTTCAACAACAGAGATGGCTGGAATTCCTTGAGAAAAATTGTTGAT--GGACTT------GTCCTCGA--GATGTTCAAAAATTGGATGTCGTCTCTGTTTTATTGATTCAGT------------CTTTGG------TTCTGTTT--GAGAGTCGATCCTTT-TCAGTGAAACTGTTTCT-----AAAGTCTTCTGCACGTCGG---------CCTTTGGTAGTGCA--GGT-----------------------------------------TTTCCAACTGAAATTTCGCGTTTAACAAAACTTCCAGTTTCTGGTCGTTTGAGAGTAGAACGCGTGGAACTCATTA--GAACGGCTG--------GTGG----
s caeRem4.Crem_Contig0   1736307 330 -  4500979 ------------------------AACGCG---TTCACGACTTTCTCGAGCAATGGGTTTGTTGTCTACCAAAAT-GATTGCAGGAGTTCCtttggaaaaattatcaat--CGACTT------GTCCTCCACAAATG--CAAATACTGGAT--------TCCTTGGGAGCTCTGGG------------GTCTCCGGTGCAATGATTTC-------TGGTCTCTCA-TCTGTGAATCCGACT-------GATTTCTTATGGATTGTTG---------TCTTTTCCAACGTATTGGGGATA----------GTGGATGGTAAATCACAAGAAGAGATCTCTTCGACAGCGGATATACGTCTCACAAAGTGACCAGTTTCCGGAAGTTT----TTTCAACGCTGGCT----TTGGTTGAGAATCTG--------CAGGATG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     66550 375 -   201088 CACTTTTGGTTCTCGTTTCCGTGAAAGTCG---ATGACGtttctt------------cacttcttttgGTGTAAT-GGGTGCTcgtgtttcttttga--aattttctccGATAAAGC------TTTATTCG--AGTGATCTGAGACTGGGT--------TCGTTTCAAGGTTCAgttctccttttctcctctCT------ATCATTTCTTCAGGTTGAACCATTTCCTTTTGGATCTGCTCCGTTTGCGATTCATCTTCAACCACTAATTTCTCCTCCTTGCTCTGCTCATCAATAATATCTTCCTCGCTTCCTTGACCAAT-----GtgtacttctttttcttggcTCTGAACCATTTCagtttgt--tcattttcactgTGCT-----------CTTCTGGT----ATGA--AAGTAACTGCATCggaaattgttat
i caeSp111.Scaffold409  I 126 C 0
s caePb3.Scfld02_0       3094617 326 +  4147112 ---GTTTGGT-----GGTCCGCGAGACCCGAATATCATGAGACTC------------CGTGTCTCTCAACAACAT-GATTGTAGGAGTGTCTTGCGAGTAATTGTCAATGATGATGTCGTCGGTTTCTTTGAAAGTGATCTTAG--TTGGA--------TCTCTTGGCTCTACAGG------------CTTTCC------ATCTTTTGAGAAGGGTGG--CATCG-GTATTGGGTTGAACCTG-----ACTTTACGCTCAGCAGCTA---------CGATGTTCAGCGGA--GATGAAGTCT-------CTTGTTGAGCAG---------------GTCTTGATGGCTTTCCAGCAACTAAATCAGT----ATTTTGAA-GTGTTT----CCGGAACATTTGCA----GTTG--GAGTAACTG--------ATTGATGT
i caePb3.Scfld02_0      C 0 I 131
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=-7664.000000
s ce10.chrX              4844188 103 + 17718866 ATCCTCACGTTTGAGTTCTTTCT-TCTTTCGCTCTATAATT---------------CCGAGTTCGGAATTATTTGTT---------GGATGATCTTCTT------------------TTAATTCAACAACACGTTT------------TTGCACTT--------------------TC----
s caeRem4.Crem_Contig0   1736637 142 -  4500979 AGTCTGTCGATTCAGTTGTCGTT-TTTTGCGGTCGATTATT---------------CCAAACGGTGAATGATTCAGGTTAGGTAGCAGATAGCCTTCTTCATCAGAAtaagaaatattttcttcttc--tgagtCT------------TCTCGTTC------GATCTTAATCACTCTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     66925 160 -   201088 ------tttcctGCGTTTTCGTTCTTCCGGAGctggttttttcttcataatcgAAACCAAAT--TGAACACTTTTGG---------AGGTGCTTTTCTTTCCTGTTGTATAA-----TCTCTCTGTCAATAAGTCCGGTTGGTTGCAATCGCATCCGTCGGAGCTTTTGAGCATGTTTAACA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3094943 131 +  4147112 I
e caeJap4.Scaffold17934   229853 717 +   591668 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=3491.000000
s ce10.chrX              4844291 50 + 17718866 GGAAATTTCACAATTGGGCAGTACTCGGAATCTGAA------GCTGAAGAAATTCG
s caeRem4.Crem_Contig0   1736779 50 -  4500979 GGAAGTTTAATAATTGGACAATAATCACTATC------ACTTGGCGAAGATATGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     67085 56 -   201088 GGAGATTCATTGTGTGGGCAGTACTCCTCATCCGAAAGCTCTACCACAGTCATtct
i caeSp111.Scaffold409  C 0 I 14
s caeJap4.Scaffold17934   230570 50 +   591668 GGCAAGATAACGATAGGGCAATATTCCGAATCGGAG------CTTGAAAATAGTCG
i caeJap4.Scaffold17934 I 717 C 0
e caePb3.Scfld02_0       3094943 131 +  4147112 I
e cb4.chrX              10182181 1266 + 21540570 I

a score=-20279.000000
s ce10.chrX              4844341 165 + 17718866 AGATGGTTTC---------CGCTGGCTTAGTTTCACTTTCTCCAA----------TTTTGGATTTGGAAAATAGGTGAAAATGTATTTATTCTTC------TGTTTCGCCAGTCCTGGTAGGTA------------ATGAGCTTCCTTCAATTTACGAGGTTGCACTTTTGACTTCTTCAAACCAATTTGTCGATGTACATG
s caeRem4.Crem_Contig0   1736829 156 -  4500979 TGACTGCTCT---------CGTTTGCTCAGTGGAATCTTCTCGGA----------AGATGTTTCCGGGTAATAGGAGAAAATGTACTTCTTGTTA----------TCCGGAATACGTGGAGGACCGATCTTTGCTGATGGTCTTGCTGCAGCT-----CGTTTGGCTTCTAGCATT------------CGATGATAAGCTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     67155 169 -   201088 tGACAACATCACAATAAGAAATTTCGGATGAAGAATAGTATCGAGGTCG------ATCTTTTTTCGGaacaaattcgaaaatgtaCTTCTTATAG----------TCTGGTGTAATAGGAAGAC------------GAGGGGCTGGAACTACT-----CGCTTTCGCTTTGGTTTTGAGGCATGGGCTCTTCGGCACGCAAT
i caeSp111.Scaffold409  I 14 C 0
s caePb3.Scfld02_0       3095074 153 +  4147112 AGATGGTACC---------AATTGTTGCTGATCCatcttttcaatgttttttgc-aaCTTCTCTGGGATTGTAGGCAAACGTATACTTTTCCGAC----------GTAGGAGTCAAAGGAAGAA------------GTGGGATTGGA-----------CGTTT---CTTTGGTCTC---TTATGAGCACGACGGTAGCCGAT
i caePb3.Scfld02_0      I 131 C 0
s caeJap4.Scaffold17934   230620 153 +   591668 TGAC---------------TGTTGAGACTGTCCAAGCTTTTCCAG-TCGCCAACGTAATTTTTGGTGTCCGTAAgcaaatatgtattttttgtgaatcGGTTGTTTCGGAAGTTTTGGAACAGA------------ATGTGATTGACGA---------GATATTGGAACCAGTGTC------------TGACGGTAAGCAGT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10182181 1266 + 21540570 I

a score=214932.000000
s ce10.chrX              4844506 547 + 17718866  
s cb4.chrX              10183447 550 + 21540570  
i cb4.chrX              I 1266 C 0
s caeRem4.Crem_Contig0   1736985 547 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     67324 532 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3095227 547 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   230773 583 +   591668  
i caeJap4.Scaffold17934 C 0 I 188

a score=122206.000000
s ce10.chrX              4845053 240 + 17718866 AGAATTCGAGATTTGATCGGCGGAAGTTCGTCTTCAGATCCAGATGATTCAAGCCAATCCTCT---G--ATTTTGGTGGTGCAAAGTTTGGCATCTTCTTTTTCGGATCTTCAATAAACTCAGGAATTGGCAACTTTTTCCACAACTTATATGCTTTTCGCCGTTCTTCTTCCTTTTTGGCATCATCATTTTCAGTAGCAATTGTTGCAGCCACTTCCTTATCCTTTGCCTTTTTCTTCAACTCA
s cb4.chrX              10183997 243 + 21540570 AGAATACGAGATCGAATTGGTGGAAGCTCATCCTCAGATCCAGAAGACTCGAGCCAATCTTCTCTGT--TCTTTGGAAGTTTGAAGTCTGGCATGATCTTTCTCGTATCCTCTGGGAATCTTGGAATCGGCTCCTTTTTCCACGCGAGGTACTGCCTACGCCGCTCTTCTGCCTTGGCTTGTTCATCAACCACAACATCTTTGGAAGCAGCTTCCTCCTTATCTTTGGCCTTTTTCTTCAGTTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1737532 240 -  4500979 AGTTGACGAGATCGAATCGGTGGAAGTTCATCTTCTGATCCAGATGATTCCAGCCAGTCTTCT---G--ATTTTGGTGGAGCAAAGTTTGGCATTTCCTTCTTTGGATCTTCGGGAAACTCAGGAATCGGCAGTTTCTTCCACAGTTTGtattctctccgtctctcttcTGATCTTTTCTGCTCATCAATCTCTGTAGCTTTGTTTGCAGCAACCTCCTTGTCtttagctttttttttcaactca
i caeRem4.Crem_Contig0  C 0 M 1168
s caeSp111.Scaffold409     67856 240 -   201088 AGAATACGTGATCGAATTAACGGAAGTTCGTCTTCAGATCCAGACGATTCAAGCCAGTCTTCG---G--ATTTTGGAAGTGTAAAGTTTGGCATATCTTTCCGTGTATCTTCAGGGAATACAGGGATCGGCAgctttttccagattttgtACTGTCTCCGTTTTTCCTCCGCTTTCTTGttctcatcaatttctgTTGCTTTGCTAGCagcatcttctttttcttttgcctTTTGCTTTATCTGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3095774 237 +  4147112 AGGATTCGAGAACGAATTGGTGGAAGTTCATCTTCGGATCCAGACGATTCAAGCcaatcttct---ttctttttgggctttttcactttgt----tctttctg-gggtcttcGGGGAATGCAGGAACTGGCAACTTCTTCCACAACTTATTCTGTCTCCGTTTTTGTTCTGCAGCCGTTTGCTCTTCCAACTCAATAGCTTGCTTGTCAGcgatttccttctctttcgCCTTCCGTTTAACTGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   231544 213 +   591668 ------------------------aGTTCGTCTTCAGATCCAGAAGACTCAAGCCAGTCTTCA---C--TTTTTGGAGCTTTGAAGTTGGGCATCTCTTGTTTTGGATCCTCGACAAACTTTGGAATTGGAAGTTTCTTCCAGAGTTGATAAGCTTTTCTTCGTTCCTCCTCAGTTTTCACGACGTCCACTACTTGTGCCTTGGCCGCAGCCTCCTCTTTCGCTTT---CCTTTTCTGTATGTCG
i caeJap4.Scaffold17934 I 188 C 0

a score=106773.000000
s ce10.chrX              4845293 287 + 17718866 TTCAGCAAAGACGGCTTCACCGAAATCTCTCCAGACAGAATACGTGCTTCTCTCTCCGCAGCTTTCTTGCGATAGTGAACCTTTTCATTCTGCTTTTGCACTCTTGTCGCCAGTGCCGCATAACTGATCCATCGACGAATTCTCATTCCCGTGCGCTGATCGTACGTGGTCATCATGTCCATTTCACCGTCCTGGCTGATGGTATTCATGGTGTCTCGCATCATGTCAATCTGCAAAATAAAAGGTTTTATAGGAGCTTCGATGGGAGGGTTCGAGGTTCCGAGCAA
s cb4.chrX              10184240 233 + 21540570 TTGAATAGCGAAGGTTTGACAACAACCTCTCCAGCTAGGATTCGAGCCTCTTTTTCAGCGAGTTGTTTACGATAACGAGCTTTCTCCGCTTGTTTCTGAACACGAGTTGCCAGGGCGGCATAACTGATCCAACGTCTAACTCTCATTCCAGTACGCTGATCGTATGTAGTCATCATGTCCATCTCACCGTCTTGACTGATAGTGTTCATGGTGTCACGCATCAtatcaatctg------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     68096 248 -   201088 TCTAACAAAGCCGGCTTGACAGGGATTTCTCCTGCCAATATTCGAGCTTCTCGATCGGCGATTTTCTTGCGGAAACGTGCTTTGTCACTTTGTTTCTGGACACGAGTTGCCAATGCTGCATAACTGATCCATCGACGGACTCTCATTCCTGTCCGCTGATCATACGTAGTCATCATATCCATTTCACCGTCTTGACTGATAGTGTTCATGGTGTCTCTCATCAtatcaatctgaaaaattcggaGT---------------------------------------AA
i caeSp111.Scaffold409  C 0 I 22
s caePb3.Scfld02_0       3096011 244 +  4147112 TCCAGGATAGCTGGTTTGACCTTGAGTTCACCGGCCAGGATACGTGCTTCCCGGTCAGCGATACGTTGTCGATAACGCATCTTCTCATTCTGCTTTTGAATACGAGTATTCAGAGCTGAGTAACTAATCCATCGATGAACTCTCTGTCCAGTACGCTGGTCATATGTGGTCATCATATCCATATCACCATCCTGACTGATAGTGTTCATGGTGTCACGCATCatatcaatctgaaaatataaaa-------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   231757 244 +   591668 GCAAGTATGGCTGCCTCCACCGAAATTTCTCCCGAAAGAATTTTCGACTCACGCTCAGCAGCACGCTTTCGTCGTGCCACTTTTTCATTCTGCTTTTGAACTCTTGTGTGCAGTGCCGAATAGCTGATCCAACGACGGATTCGCATGCCAGATCGCTGATCATAGGTGGTCATCATGTCCATTTCACCATCTTGACTGATAGTGTTCATGGTATCTCGCATCATATCAatctgaaatattgaaa-------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-14215.000000
s ce10.chrX              4845580 123 + 17718866 GGCGCGCCTGATTTTTGTCAttgcctcaattctgcagtctaacttaaaatcaaatggttggtgtttgcggcatataaatagtgcgataggtgCAGTGCGCTCAAATGCTGTGAGGTATTGCAG----
s cb4.chrX              10184473  12 + 21540570 ---------------------------------------------aaaatcaaggaa----------------------------------------------------------------------
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       3096255  22 +  4147112 ----------attttttttattt------------------atttatagt-----------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   232001  21 +   591668 ----------------------------------------aattataaattaaaTAG------------------------------------------------------------------TGTt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     68344  22 -   201088 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=0.000000
s ce10.chrX              4845703 20 + 17718866 TTAGACGCACTGTAAAtctt
e caePb3.Scfld02_0       3096277 10 +  4147112 I
e caeJap4.Scaffold17934   232022  0 +   591668 C
e cb4.chrX              10184485  5 + 21540570 I
e caeSp111.Scaffold409     68344 22 -   201088 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=0.000000
s ce10.chrX              4845723 3 + 17718866 ttg
e caePb3.Scfld02_0       3096277 10 +  4147112 I
e caeJap4.Scaffold17934   232022 0 +   591668 C
e cb4.chrX              10184485 5 + 21540570 I
e caeSp111.Scaffold409     68344 22 -   201088 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-8056.000000
s ce10.chrX              4845726 136 + 17718866 cagcgcccgacactttttgattctttgcctctcactacaggaagctcagctcgcggtttaaggaaggcgacaaaaatctccggaaggccgaagcggagacgattcgggacctgcTTCATACAAGTATTTCGAGAAA
s cb4.chrX              10184490  21 + 21540570 -------------TTTTTGAGC----------------------------------------------------AATATTCGGAAT--------------------------------------------------
i cb4.chrX              I 5 C 0
s caeJap4.Scaffold17934   232022  21 +   591668 ------------ctatt---------------------------------------------------------catttttttaaggCCG----------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3096277  10 +  4147112 I
e caeSp111.Scaffold409     68344  22 -   201088 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=0.000000
s ce10.chrX              4845862 2 + 17718866 CA
e caePb3.Scfld02_0       3096277 10 +  4147112 I
e caeJap4.Scaffold17934   232043 0 +   591668 C
e cb4.chrX              10184511 0 + 21540570 C
e caeSp111.Scaffold409     68344 22 -   201088 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=69201.000000
s ce10.chrX              4845864 608 + 17718866  
s cb4.chrX              10184511 617 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     68366 605 -   201088  
i caeSp111.Scaffold409  I 22 C 0
s caePb3.Scfld02_0       3096287 609 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   232043 645 +   591668  
i caeJap4.Scaffold17934 C 0 I 877
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-2234.000000
s ce10.chrX              4846472 19 + 17718866 ATATATTT---TGTTAATTTCA
s cb4.chrX              10185128 22 + 21540570 AAATtactttttgttattttca
i cb4.chrX              C 0 I 148
s caeSp111.Scaffold409     68971  8 -   201088 ATATTGTT--------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3096896  8 +  4147112 acatggca--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   232688 877 +   591668 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-2086.000000
s ce10.chrX              4846491 42 + 17718866 TTTTTTACTTTGTTAATTTTTGTTTGGTGCTAAAAGTATGCT
s caeSp111.Scaffold409     68979 27 -   201088 --------TTCGTAAAGTTTCTGTTAAtggaaaaa-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3096904 23 +  4147112 --------attcgaaatttcacgaCA----AGAAA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   232688 877 +   591668 I
e cb4.chrX              10185150 148 + 21540570 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=10375.000000
s ce10.chrX              4846533 115 + 17718866 GCTTACTCTTCGAGGTATTCCAAT---ATGATGAACTGCGGTCGGATCACTATTCTTCCGAGCTGGCTTAGTCTTTTGGAAATTATCGTTGCTC---TTCACTCTTCTGGTCAACTGTACA
s caeSp111.Scaffold409     69006 114 -   201088 -ctcactcttcGTGGAAGTCCTTT---ATAACTGACAATTGTTGGATCACTGTTCTTTCTGCTAGTTTTGGTTCTTTGAATGTTGTCCGTGCTT---TTTATCCGTTGGGCCAATTGTATG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3096927 114 +  4147112 -CTCACTCTTCTTATGATACTTTT---GCTTTTAGATGGGTTCGGATCGCTATTCTTCCTACTAAATCTGTTCTTGCGGAAGTTTTCATTGCTCAGAGCTTTCCGTT---CCATGCGAGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   233565 118 +   591668 GCTTACCCTTCGAGGAAGTCCTTTTGAAAGACTTAGTGCTGTTGGATCACTATTTTTACGAACTGGTAGCCAGTTTGGCAGGTTCTCGCTACTT---TTAACACGTCGCGAAAACTGCATG
i caeJap4.Scaffold17934 I 877 C 0
e cb4.chrX              10185150 148 + 21540570 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-1198.000000
s ce10.chrX              4846648 229 + 17718866 C---TGTACAAATCGCGATAGAACTTTGCATCAACTTCAACGCGGTGGCGATTTCGATGACGAA---------TTGGACGTGGTGGGACAGAGTGCTCCGTAACTTCTCCCCATGTCACTGTCTTTGTCTGCTTGGTGAGTTCAGTGAGCGGAACCAC-CATTCCTCGGTTGT-AATCAATCTTGATGCTGCTC--------------------------------------TTTCTTGGACTTCCAATTGGGCAATCGCCAAGTCGTTTTTGTTTGACAA
s cb4.chrX              10185298 268 + 21540570 T---TGTAAAACTCGAATAGAAAATCGGGTTCCACTTCAACATAGTGTTGA---CCATGAAGCT------TGAACGGTCGAGGAGATATCGGATGCTCTGTGACCTCTCCCCATGTAACCTCTTTCGGCTCTTTCACAGGAGCTTCAATAGGCTCTACTGGATTGGTGGGTGT-TTCTAGGTCGGATTCCTCGCTGTGCTCGTTGTGCTCGCTGTTTTCACCGCTATTCTCTTTTGTTGGAGTGCCTAACGGACAGCTTAAACTTTCTTGCTCGTCTAGAA
i cb4.chrX              I 148 C 0
s caeSp111.Scaffold409     69120 211 -   201088 CTTGTATAGAGTTCTTGAAGGAAACTACGATCAACTTCAACACTGCGACGGTTTCCATAACGAA------------ATCGAGGCGGAACTCTGTGTTCGATGTTTCTGCCCCAGCTCACTGATTTATTAGGTTTTGCCGGTTGAGTAGTTGAAT--------------GATGT------ACTTTGATACTGCTC--------------------------------------TTCTTTGGACTCCCGAGAGGAACATCCCCATCCCGTTTCTCTTTCACAC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3097041 235 +  4147112 C---TGTAAACCTCTTCCATAAAACTGGCATCCACTTCAACTTGGAATCGATTCACATGGCGAAGGCCCGTAATTGGGCGTGCAGGCACAGGATGTGTGGTGTTTTCTCCCCATGTGACTCCTTTTGCCAATTTCACCAAATCCTTAGCTGCACCCGC-----AGACAGGCGTTTACCAAACTTGATTGCGGGC--------------------------------------TTTTTCGGACTTCCAAGAGGGCATTCAGcacgttttttctctttctgga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   233683 195 +   591668 C---TGTAGAGTTCTCGGAGAAAGTTCATATCGACAT-------GCCGAGATTCTTGAGATGGG--------TTCGGTCGAATA---ATTTGATGTTCGACTACACCTCCCCACGTGACAGACTTTGGCTCTTTTGTAACATTTGCCATCAGATC----------GCGAGCAT-CGCCAA---TGGGAACGATT--------------------------------------TTAACGGGGCTTCCAAAAGG-------------CGCCTCAGTTTCACAA
i caeJap4.Scaffold17934 C 0 I 104
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=-943.000000
s ce10.chrX              4846877 122 + 17718866 GGTCTTGTTCGAAAAGATTTGTTAGAA------------CTGATCCCAACTTTTTCGGCT------CATCTTCCAC------------------------------------TTCCTC------------CTCTTCCACCGAAATTTTACGAATATTTTCGCGAGTGTGCGGGT-------------TGAAGCAATTGTAA--------------------------------
s cb4.chrX              10185566 233 + 21540570 GCTCTTCATCGACCACTTCATTAACCACCTGAGGCTGCTCAGGCTGCTCATCTGTAACATCGACAACTTCGGTGACTTCCCCAGCCGCTTCTCGACGAGCCGCCTCTTTTGCTTCTTCGTATGCTCTTCGCTCTTCCATCTCCTCCTTCAAGATGTTGCTACGAGTATGCGGATTGTAGCGCATGACTGGAACGTATGTACTTATTCTGACTCCAAGTTTCCTTTTGAGAGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     69331 122 -   201088 GGTTCTGTTCGTACACATTTGTGAGAA------------CAGACCCCACAGCTAGTGGCT------CATCG-TTact-----------------------------------ttcttc------------cttttccatGGAGAGTTTCCGCATGTTTGTCCGGGTATGAGGAT-------------TGAAACGTGTGTAA--------------------------------
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3097276 125 +  4147112 GGTTTGCTATGATAATGTTTGTCACCA------------CAGTTTCCAGCACTGGAACTT------CTTCGactactt---------------------------------cttcttc------------ctcttccatggaagtattttgcatgttggctCTCGTATGCGGGT-------------TGAAACGGGTATAG--------------------------------
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17934   233878 104 +   591668 I
e caeRem4.Crem_Contig0   1737772 1168 -  4500979 M

a score=2294.000000
s ce10.chrX              4846999 17 + 17718866 GAGTCGTCGTCTCCAGC
s cb4.chrX              10185799 17 + 21540570 GGATCGTCGTCTTCGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1738954 16 -  4500979 -GAGTCTCTGCTCCTGT
i caeRem4.Crem_Contig0  M 1168 C 0
s caeSp111.Scaffold409     69456 17 -   201088 GGTGGATCAGTTTCAGA
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3097404 17 +  4147112 GGCTTGTCTTCTTCAAT
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17934   233878 104 +   591668 I

a score=48602.000000
s ce10.chrX              4847016 504 + 17718866  
s cb4.chrX              10185816 549 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1738970 508 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     69473 513 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3097421 527 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   233982 542 +   591668  
i caeJap4.Scaffold17934 I 104 I 128

a score=5537.000000
s ce10.chrX              4847520  98 + 17718866 CTTCTTGGAGTCACGTCCAATTAAGAGCACTTCCGTGAAAAAATCCGAATAAAATTCTACAGCTTTTGTTGGAAGACAAAGTGGTGAC--------------TTGAAAATGT
s cb4.chrX              10186365 112 + 21540570 TATGTTTTTGTCCTTGGGAAGAAGAATGGTCTCAGTGAAGAAGGTTTTGTACAGCTGGGATTTTTCTTTGGGCAATTGAAGCGGTGGCTCAAAGAGGGTGTGTTTGCAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1739478  98 -  4500979 CTTTGGAGCATCTCGACCAACGAGAGTAGTTTCAGTGTAAAAATCTCTGTAGAACTGCGCATCTTTCTCGGGTACAACAAGTGGTGAC--------------TTTTCAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     69986  98 -   201088 GTTTGTTGGGTGACGTCCCTTTAGCATTGTTTCAGTGAAATAATTCGTGAAGAATTGAGTGTTTTCGTCTGGTAACTCAAGTGGAGTT--------------TTGTAGAAAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3097948  98 +  4147112 TCCTGTAGGATGATGGCCGCGGAGCACATTTTCAGTGAAGTAGTCATTCAGAATCAGAGCGTCCTTCTCTGGCCACATCAAGGGTGAC--------------TTTTTGAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   234524 128 +   591668 I

a score=109399.000000
s ce10.chrX              4847618 363 + 17718866 CAATTTCAGACAACTGCTCAGCA---GGAACTCGTGGA--AATTTTGGGCACAATGTGAACATGCCATCTCGTCCTTCATCCAAAATTTGAAGACCAGGCCAGGTGCGAAGAATAGGATCATTGAATATATAAGACACGTGCAGATTTTTCGCAGCAGCGCGCATTACTTCAATTGTGATATAATCAAATAGGGGATCGATTCCCTCCAATTGACGTGGTGGTTGTGGTTCTTTGAATGGTACAACCTGCAA-GTAAAATTGTAATTTCAAGATTCAAACTAACATTTTTT--ACCCTTCTCATAAACTTGCGGCCAGTTTCTCGGTCAGTATCAGAAATCATTGGAGAATCCCACTCTAGAAATTTAGTG
s cb4.chrX              10186477 297 + 21540570 CAAAT-----------------------CTTTTTGGGACGACTTCCGTTCAGA--GCGAACATGTCGTCCCGATTCCCATCCATAATTTGAAGGCCAGGCCATGTTCGGAGAATCGGATCATTGTAAATGTAAGAGATGTGCAGATTTTTGGTTGCAGCCAACATGACGTCAATTGTGATATAATCAAATAACGGATCAACTCCTTCCAGCTGTCGAGGTGGTTGTGGTTCTTTCAGAGGGACA-------------------------------------------------ACTCTTCTCATAAACTTCTTGCCCGTTTCCCTATCAGTGTCAGCAATCATTGGCGAATCCCAGGTGAAGTATTCAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1739576 311 -  4500979 CAATT--GGAACATTGTTT-------CGTCTCTTGGGA--ATTTTCGGACAAAGTGTGAACATTTCATTTCGTCCTTCatccaaaatttgaagacCTGGCCAAGTAGTAAGAATCGGATCGTTGAAGATGTAGGAAACGTGGAGATTCTTTGCAGCAGCCAACATTGCTTCGATTGTGACGTATTCGAACATAGGGTCAATATGATCAAGTTGACGAGGTGGTTGCGGCTCTTTGAATGGAACG-------------------------------------------------ACTCTTCTCATGAACTTTTCGCCAGTTTTTCGATCAGTATCAGCAATCATAGGTGAATCCCAATTGATAAACTTTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     70084 353 -   201088 CTAGG--GGACGTCGTTTT-------GGTATTCGAGGA--ACTCTCGGACAAAGTGTAAACATTTCATAGCGTCCTCTATCTAGAACTTGAAGACCAGGCCATGTGAATAACGGTGgatcattgaaaatgtaaGTGACGTTGATTGTCCGTTCAGCATCTTGCAGTGTTTCGAGAGGAATGAAAGGAAACCAAGGATCAATATCAACTATTTGACGAGGTGGTTGTGGTTCTTTGAATGGTACAACCTGAAATAGTTAGTTTTCATATGAATATTCTATG-AACATGTC-CTTACTCTTCTCATGAACTTATGTCCGGTTTTTCGATCAGTATCAGCAATCATTGGTGAGTCCCACTCAAGGAATT-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3098046 355 +  4147112 TAGGA--ATGTAACGATTT-------GGGACAATGGGA--GTCTTTTTACAGAGAGTGAAGGCGTAATCCCGTCCTTCGTCCAATATCTGAAGACCCGGCCATGTGAAAAGCGGTGGATCGTAGTACATATAGATGAGATTGACGGTCTTTTCTGCTCTCCGAAGCGTTTCAATAGTGAGGTAAGGGAAGAGAAAGTCAACCTGGTGAATTTGACGTGGTGGTTGTGGCTCTTTGAATGGAataacctaaaa-aaaaagttttt---ttagtaTTGTGGC-ATTATTTTACGCACTCTTCTCCTGAATTTGCGACCAGTTTTGCGATCAGTGTCGTCAATCATTGGAGAGTCCCATTCAATAAATTGTGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   234652 320 +   591668 CCATTCTTGATAACCGTTTCTCCTTTGACCATCTTGGC--AGGGTCGAGCTCAATGTGAACATCTCATCGCGTTCATCGTCCAGAATTTGAATTCCAGGATACGTATGAAGGATCGGTTGATTAATTAGCCATGAAATGTGCAAATTTTTAGCAGCAGACATTCGAACTTCTAATGGAATATCTTCAAAGACACTGTCAGCTTCTTTGATTTGGCGAGGTGGTTGAGGTTCTGGAAATGGAACG-------------------------------------------------ACACGCCGAGACACGTTCTCTCCGGTGATTCCATCAGTGACGAAAATCATTGGAGAATCCCACTCAACAAACGTTGTG
i caeJap4.Scaffold17934 I 128 I 2828

a score=-18395.000000
s ce10.chrX              4847981 53 + 17718866 AAGTTAGTCAGAATATCATCAACTTT-----ATA---GTCTCCGTTGAC---TGAGTGCGTATT------
s cb4.chrX              10186774 53 + 21540570 A--------------TCCGAGACAGCTTGGTAGAGAGAGCTTTGTTGTT---TTGAGACGTCTCGAACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1739887 53 -  4500979 GGT------------TCGGTGACAGC-----ACAGATCACATTGTGATTCACTTGGTATTTATCCAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     70437 38 -   201088 ---------------TCGTCGACTCC-----ATA---ACCTCTGTCACT------GGGTTTCCTAAT---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3098401 41 +  4147112 TGTGTTGTCAA---ATAGTCGATTGC-----A------------TCGTT------GTGCTGAGGAAG---
i caePb3.Scfld02_0      C 0 I 143
e caeJap4.Scaffold17934   234972 2828 +   591668 I

a score=391.000000
s ce10.chrX              4848034 57 + 17718866 AAATTGCTGCAATACACCAGCCGTTA-GTAAAGGTTCCAAGTATTC---TGATCCATAATG
s cb4.chrX              10186827 57 + 21540570 GAATTGATGCAGAAGCTCATCTGAGA-TGTTTCTCTCGACAAACTC---AGGTTCAAGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1739940 57 -  4500979 AAGTTGATGTTGTGCTTCTTCCGACA-GATTCGGCTCAAAGAACTC---CGGTCCATAATG
i caeRem4.Crem_Contig0  C 0 I 95
s caeSp111.Scaffold409     70475 56 -   201088 GAACTGGCATAAA-----TTCCAAGGTGGTTTCTTGCTGCGAATGTGAGcgattcataatt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3098442 143 +  4147112 I
e caeJap4.Scaffold17934   234972 2828 +   591668 I

a score=-1421.000000
s ce10.chrX              4848091 28 + 17718866 -------------CGGCACAACATTTCCATGTTCTCTTTGA
s cb4.chrX              10186884 25 + 21540570 ---------------GTTCACAGTGTCATCGTTCTTATCG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     70531 41 -   201088 ttcaggaGGAATATATTCCACGTTCTCAGTTTTTCCTTTGA
i caeSp111.Scaffold409  C 0 I 75
e caePb3.Scfld02_0       3098442 143 +  4147112 I
e caeJap4.Scaffold17934   234972 2828 +   591668 I
e caeRem4.Crem_Contig0   1739997 95 -  4500979 I

a score=-246.000000
s ce10.chrX              4848119 67 + 17718866 TGACACATATCGCGGTAGG-CAATGATCCGGCGGTAGATTTCATGGA---AAAATTCATTA-CACACACGTG
s cb4.chrX              10186909 71 + 21540570 -GACGCTTCCAGCAAAATTTCTCTGATCAATCGATCGAACAAATGGACAGGAAACTCATTGTCAGACTCCCA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3098442 143 +  4147112 I
e caeJap4.Scaffold17934   234972 2828 +   591668 I
e caeSp111.Scaffold409     70572 75 -   201088 I
e caeRem4.Crem_Contig0   1739997 95 -  4500979 I

a score=-764.000000
s ce10.chrX              4848186 3 + 17718866 --AAT--
s cb4.chrX              10186980 7 + 21540570 AAACTCT
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0       3098585 3 +  4147112 --AGT--
i caePb3.Scfld02_0      I 143 C 0
e caeJap4.Scaffold17934   234972 2828 +   591668 I
e caeSp111.Scaffold409     70572 75 -   201088 I
e caeRem4.Crem_Contig0   1739997 95 -  4500979 I

a score=-2360.000000
s ce10.chrX              4848189 15 + 17718866 -TCTCTGTCGATTCAA-
s cb4.chrX              10186988  9 + 21540570 -TTTTGG------TGA-
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1740092 15 -  4500979 -CTTCGGTCGAGCTGG-
i caeRem4.Crem_Contig0  I 95 C 0
s caePb3.Scfld02_0       3098588 17 +  4147112 CCTCCGTTTCAAGCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   234972 2828 +   591668 I
e caeSp111.Scaffold409     70572 75 -   201088 I

a score=13685.000000
s ce10.chrX              4848204 159 + 17718866 -TTGCT---AAACCAAGGTCCGGACAAGAGTTTGAACGACGAAGCACGGGTTTTGATGGTTGAGCTGA------CAAATGTTCAAAATCTTCAAGGTACAATCCCGGATTCTTT---TTTGGAGGCTTCGGCACTCGGCGGTTTTCGATCTCATGCATAAAGTTTGGTGGCT
s cb4.chrX              10186997 165 + 21540570 -CTTTA---ACGCGGAAGTTGGGACATGATTTCCATTTCCAAAGGCCAGAGTAATCAATTCTTGCAGAGTCCGAAGGAAGTTTGTAATCTTCCAAGTAGAAAGATTTGTACTTT---CTGGGTTCTTCTGCCACCCGCCTTCTTTCGATTTCTTCCATGAAATTTGGaggct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1740107 162 -  4500979 -TACTA---AAAGAAAGATCAGGAGAAGATGGGCTTCGCCGAATCGTAGGTAGTTCAGCCTTGATAGA---TGATGGGAGTTCGTAGTCCTCGAGATAGTAGCATTTACGTTTC---TTGGGTGGAACAGGTATTCTTCGTCTTTCGATTTCACGCATAAAGTTTGGTGGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     70647 156 -   201088 -TGGGA---AAAGAAAGGTTTGGACAAGATCTTGTTCGACGAAGTGTAGAGTAGTCAGTTTTAGG---------CGGCGGATCTATGTCCTCAAGATAATA--AACTACTTTTTTAATTGGGT-CTGGTGgtaatcttcttctttctatttcgCGCATGTGAGCAGGaggct
i caeSp111.Scaffold409  I 75 C 0
s caePb3.Scfld02_0       3098605 164 +  4147112 TTGAAATCCAAAGAAAGTTCCGGTAAAGATTTGACACGTCGAAGAGTGGAATGCTCATACTTTGGACA------CTGTGGTTCCAAATCTTCGAGGTAGAAGCACTTTCTCTTTGGAGGAGGTGACGGtggaaatcttcttcttctcatttcaagCATCATATCAGgtgg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   234972 2828 +   591668 I

a score=640822.000000
s ce10.chrX              4848363 1991 + 17718866  
s cb4.chrX              10187162 2100 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1740269 1974 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     70803 1965 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3098769 1942 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   237800 1935 +   591668  
i caeJap4.Scaffold17934 I 2828 I 882

a score=-10141.000000
s ce10.chrX              4850354 44 + 17718866 CATTATAATCAACAAGCACTGACAAAGTGTACCTTTCAACGATC
s cb4.chrX              10189262 13 + 21540570 -------------------------------CTTTTCAAACACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1742243 36 -  4500979 GGTCTT--------ATATGTGAAGCAACTTACTTTTCAGGGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     72768 15 -   201088 AATGAT----------------------------TGTTGTGTT-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3100711 40 +  4147112 GATGTTGAAC----GGACTGCATACACCATACCATATAATGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   239735 882 +   591668 I

a score=279170.000000
s ce10.chrX              4850398 725 + 17718866  
s cb4.chrX              10189275 765 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1742279 725 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     72783 671 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3100751 720 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   240617 681 +   591668  
i caeJap4.Scaffold17934 I 882 I 106

a score=250476.000000
s ce10.chrX              4851123 375 + 17718866 TGGTTTT-----------TCAGAAATCGGTCGTCCTCCAATTAGATGAGTTGGGTTCATATTCATAGCAAAGACGCGGTGGCTGTTAGTATGTACAAATAATTCATTGGTAATATAGGGATTGAACTTCATATCGAGTATGCTCTCGTTTTTTTCAAGTCCAATATCATAAATAGCGCACGGCACTTCTGGCCGCCGAACATCGTACAGGAGGACGTTGGATCCGTTCCAGCAAGCAATTTCAAGGGGTCTTGTCGAACAGAGAGCTGTTTTCTGAACACCACCATCGAAGAAGACTGCATTGAAAGCTTTTGGGCATCGGACGTCCATAACACGGAGTGATTCATCATCTCCAACAGCAAGAAGAAATGGGCCATGCCTGA---AAAT-
s cb4.chrX              10190040 377 + 21540570 CGGTTTT-----------TCTCCAAGAACTCGACCTCCTAGCAATCGAGAAGGATTGATTTGCATCGCGAACACTCTATGCTGATTGGTATGTATAAATAACTCGTTAGCAATGTACGGATTGAACTTCATGTCATTAAGTTTCTCGTTTTCAATGAGTCCTATATCATACGTGGCACAGGGCACGTCTGGACGGCGAATATCATACAAAAGGACGTTGGTCCCGTCCCAGCAAGCAATCTCCAGGGGTCGAGTTGAAGACAAAGCGGTTCTTTGAACTCCTCCTTGAAAATATACTGCATTAAAAGCTTTCGGACAACGAACATCCATGATGCGTAGTGCATGGTCATCTCCGACGGCAAGGAGAAACGCGCTgtgcctagaaaaaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1743004 374 -  4500979 CGGTTTG-----------TCGCCAATTGCACGTCCTCCAACAAGGTGAGCCGGATTGACATTCATTGCATATACACGATGCTTACTAGTATGTACAAATAACTCGTTAGTAATATACGGGTTGAACTTCATATCGATAATTCTCTCGTCTTTGTGAAGTCCAATATCATAAATAGCACAGGGCACTTCAGGTCGGCGTACATCATACAAAAGGACATTGGATCCATCCCAACAAGCTATCTCCAATGGTCGTGTTGAGCATAGTGCGGTTCTTTGAACACCTCCCTCGAAGAAAACTGCGTTGAACGCTTTCGGACAGCGGACGTCCATAATACGGAGTGAATTATCATCTCCAACAGCAAGTAGGAATGGATTATgcctgg---aaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     73454 374 -   201088 TGGTTTT-----------TCTGCCACCGATTTCCCACCGATCAAGTGTGCTGGATTTACTTTCATTGCAAACACACGATGCTGGTTGGTATGTACAAATAACTCATCAGTGACATACGGATTGAACTTCATATCAAGTataatttcttgttttttcaatccaATGTCATAAATGGCACACGGAACATCCGGCCGACGAACGTCATACAGAAGGACGTTTGATCCATTCCAACAGGCGATTTCCAGAGGTCGTGTGGAGCAAAGAGCCGTTTTCTGAACACCtccatcaaaaaaaactgcaTTGAAGGATTTTGGAGAACGGGCATCCATGATACGGAGTGATGTGTCATCTCCCACAGCGAGAAGAAATTGCGAATACCtgg---aaa--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3101471 374 +  4147112 CGGCTTC-----------TCTCCCAATGTTTTTCCACCGATTAATATCACGGGATTACATTTTATAGCATATACACGGTGCTTGTTCGTCTGCACAAATAATTCATCCACAATGTAGGGATTGTACTTCATGTCGAACATCGTCTCGTCATCATGAAGTCCAATATCAACTATAGAACAGGGCACTTCTGGCCGACGAATATCATAAATAAGGACATTGTTTCCGTTCCAGCAAGCAATTTCAAGTGGTCTGGAAGAGCAGAGAGCTGTCTTCTGAACACCTCCGTCGAAGAAAACTGCATTGAATGCCTTCGGAAGACGGGCGTCCATAATACGGAGAGAATTATCATCTCCGACAGCAAGTAGAAATGGCGAATGCCTGC---AAA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   241404 386 +   591668 tggttttttaaccCCTGATCTAAACTTACTCTTCCGCCAATAAGAGCGGCTGGATTAACTTGCATTGCCATCACACGATAGTTACTGGTGTGCAAAAATAATTCGTTTGTTAGATATGGGTTAAACTTCATATCGAGCAGCGTTTCTCCGGCATTTaagtcaattttaaaaatgttacaTGGAACTTCAGGCCGACGAACATCATATAGAAGGATGTTTCTTCCATCCCAACATGCAATTTCTAGCGGTCTCGTTGAGGAAAGAGCCGtttttttGACaccgttttcaaaaaacacaGCGTTCAACGATTTCGGGCAGCGAACGTCTACAATACGAAGAGCTTTATTGTCTCCAATGGCAAGATGGAATGGTCCATGCCTAA---AAA-T
i caeJap4.Scaffold17934 I 106 I 822

a score=-1059.000000
s ce10.chrX              4851498 8 + 17718866 TTAGAGGA
s cb4.chrX              10190417 6 + 21540570 --aaagaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1743378 6 -  4500979 --aaagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     73828 4 -   201088 --a--aca
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3101845 6 +  4147112 --ATTACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   241790 822 +   591668 I

a score=73037.000000
s ce10.chrX              4851506 140 + 17718866 AATTACTATAAAACATTTTAAGGCCACAAAA-------AACCTACCAAATCCAATCAATAGTATTTACAGGGGAATATGAATCGTAGTGAGCAATATTCCGTGCTGGTTTCACAAGATCAATGACGGTTACTGTGCTATTTCTGAAA
s cb4.chrX              10190423 140 + 21540570 aattatgaa-----attggGATAGAAACGAA--TGTTGGACTTACCAGATCCAGTCAATAGTATTTACATGAGCAATTGAATCGTAAAAGGCAATATTGCGAGTTGGTTTGACAAGATCGAGGACGGTCACTGTGCTATTTCTGAAA
i cb4.chrX              C 0 I 219
s caeRem4.Crem_Contig0   1743384 142 -  4500979 agttagCAC-----ATTGAGAAAATCGTGAAGTTGTGAAACTTACCAAACCCAGTCAATTGTATTTACAGGAATAAGTGAATCATAGTGAGCAAGGTTTCTCGCTGGTCTGACAAGATCAATAACGGTAACCGtactatttctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     73832 137 -   201088 gatttcatt----------cgaataaaaTAGTTCATTTTACATACCAAACCCAGTCGATAGTGTTAACAGGAGTAGGAGAATCATAGTAGGCGATGGTCCTAGCTGGTTTCACCAAATCGATAACTGTCACAGTgctatttctgaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3101851 142 +  4147112 GATTGGATT-----GTCGGCAGGCCAGAAAGTCTATGAAACCTACCAAATCCAATCAATAGTATTTACAGGGATCGGTGAGTCATAATGTGCAATGTTACGAGCTGGTTTCACAAGATCAATCAGGGAAACTGTgctatttctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   242612 134 +   591668 -------------aataaccaaaaaaaaaactataaaattcCCACCATATCCAATCGATAGTATTTACAGGGATCGGCGAATCAAAATAGGCTATATTTCTGGAAGGCTTTACCAAGTCAATCACAGTCACTGTGCTTTCtctgaaa
i caeJap4.Scaffold17934 I 822 C 0

a score=546.000000
s ce10.chrX              4851646 1 + 17718866 A
s caeRem4.Crem_Contig0   1743526 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 49
s caePb3.Scfld02_0       3101993 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 1994
s caeJap4.Scaffold17934   242746 1 +   591668 a
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10190563 219 + 21540570 I
e caeSp111.Scaffold409     73969 0 -   201088 C

a score=151.000000
s ce10.chrX              4851647 3 + 17718866 TTA
s caeJap4.Scaffold17934   242747 3 +   591668 tca
i caeJap4.Scaffold17934 C 0 I 3
e caePb3.Scfld02_0       3101994 1994 +  4147112 I
e cb4.chrX              10190563 219 + 21540570 I
e caeSp111.Scaffold409     73969 0 -   201088 C
e caeRem4.Crem_Contig0   1743527 49 -  4500979 I

a score=-1930.000000
s ce10.chrX              4851650 234 + 17718866 CTATTCAATGTTTTTATTTAGAGTAATATTCAAACATAATCATCTCTTACGCAATCACGCCAATGTCGTGGTGAGACCCGCGGGGGCTCCTTCCATTTCTAGGCTAACTGTCTCCATAACAATCACTCTCACTGCCTCCCCCCTCTCTCATTTTTTTATTTCCGAAAATGTTTTCGCGGGTTTTTTGAAACATAACTC-ATGTAGTTTTTTTTTTCAATTTAAATGCAAACAAAA
s caeSp111.Scaffold409     73969 137 -   201088 ------------------taaggGAATCTT-------------------------------------------------------GTTCCAACGAATTCTCGGC--ATTTTATTCAT--CAATGCATTTGACTG----------------TTTGCTTAGACGCAGAGATATCTTAAAGGGA-----GGAACGGAATTCCATGTAATTGTTCCGTTCGTTGCGAGACCCGGCAGAA
i caeSp111.Scaffold409  C 0 I 421
e caePb3.Scfld02_0       3101994 1994 +  4147112 I
e caeJap4.Scaffold17934   242750   3 +   591668 I
e cb4.chrX              10190563 219 + 21540570 I
e caeRem4.Crem_Contig0   1743527  49 -  4500979 I

a score=0.000000
s ce10.chrX              4851884 453 + 17718866 TTGTGTAAGCGTGATGTTTTATGCTAATTTGATTTGAAAATATGTTTGATTGTGTTTGGAATTTATCGCGTGTAACATTCAGACTTCTTAGGATAACGtaaaaatgtttttatataataattataaaaaatGCCACTGACGTCCTTTTATCACGATTTTTGGAATATGAATAGCTGTAAATCGAAAAtagggtgctttcatgataggcaggcaccctaatgcctacctgccgcctttttcctgcactttggtgtctatgctcaagtttttgattgaataattttaataaatgttgatgaaaatcacattaagaaagttttgaaaaaagttcgtgtgtattagcatcaggctcgggtaggcgcgatgtcggcaaacgttgctttaaaaacaggcaggcaggcgtcttggcgcctatatgaaagccttaGGGAAGACATAACTTATGCCGTTTCT
e caePb3.Scfld02_0       3101994 1994 +  4147112 I
e caeJap4.Scaffold17934   242750   3 +   591668 I
e cb4.chrX              10190563 219 + 21540570 I
e caeSp111.Scaffold409     74106 421 -   201088 I
e caeRem4.Crem_Contig0   1743527  49 -  4500979 I

a score=617.000000
s ce10.chrX              4852337 25 + 17718866 TTTCGACTAATAGCTGA---TTTTTTTT
s caeSp111.Scaffold409     74527 28 -   201088 ttttggctactttttgagattttttgtt
i caeSp111.Scaffold409  I 421 C 0
e caePb3.Scfld02_0       3101994 1994 +  4147112 I
e caeJap4.Scaffold17934   242750  3 +   591668 I
e cb4.chrX              10190563 219 + 21540570 I
e caeRem4.Crem_Contig0   1743527 49 -  4500979 I

a score=-434.000000
s ce10.chrX              4852362 38 + 17718866 CAATTCTACCCTTGCTCGAATCGCACATATTTGAATGC
s caeSp111.Scaffold409     74555 25 -   201088 caatttgatatttttt-------------tctgaatga
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   242753 32 +   591668 caatTGTGTCTATTCTTGAAGCGTA----ACAGAAT--
i caeJap4.Scaffold17934 I 3 C 0
e caePb3.Scfld02_0       3101994 1994 +  4147112 I
e cb4.chrX              10190563 219 + 21540570 I
e caeRem4.Crem_Contig0   1743527 49 -  4500979 I

a score=910.000000
s ce10.chrX              4852400 1 + 17718866 A
s cb4.chrX              10190782 1 + 21540570 a
i cb4.chrX              I 219 C 0
s caeRem4.Crem_Contig0   1743576 1 -  4500979 A
i caeRem4.Crem_Contig0  I 49 C 0
s caeSp111.Scaffold409     74580 1 -   201088 a
i caeSp111.Scaffold409  C 0 I 1
s caeJap4.Scaffold17934   242785 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3101994 1994 +  4147112 I

a score=270988.000000
s ce10.chrX              4852401 372 + 17718866 ACTTACACAGAAGAATCTGTTCTATGATTTACAGCAAGCATTCCTTTGTCGAGTCGTCCAACACGTAACCCGTAGATGGTTTCACC-AGGCAATGAGCAAAGGTTTTGACCACTGATTTTGGTGCTGTAA--AATTGAT-------GATAAGTTGACAAACGTTCG--------ATTCCGGACTCACAAGTTGATATCGTTAAAATTACTAATATACCGGGCAAGGCAAATGTCACCGGTATTTTTGGAATATGGAAAATAAGTGATATGTTCGTGAAAGTCGATTGCAGTCACAAATTCCTGTTTCGATTTGTCAGTCAGTTTATGTTTA-AAATATGGTTCACTGCTACGAAACGCGTCCATCGGATGCATGATTTCGCGAACCTACAA
s cb4.chrX              10190783 372 + 21540570 actcacacAGAAGGTCCGGTACGATGATTGACAGCGACCATTCCCTTATCGAGACGTCCGACGCGTAACCCGTAGATTGTTTCACC-CGGCAACGCAAATAAATGTTGTCCACTAATTTTGGCGCTGAAA-----------------ATGTCTTCGTAATTATTTCACAGCTCTCTAGTTCACTTACAAATTTGTGTCATTGAAATTACTAATATACCGAGCAAGACAAACGTCACCGGTATTCTTTGCATATGGAAAGTAAGTGATATGTTCATGAAAGTCGATAGCCGTCACATATTCATTTCTTGATTTGTCAGCTAACTCGTGTTTA-AAATATGGCTCATAGCTTCGGAACGCATCCATCGGATGCATAATCTCTCGAACCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1743577 374 -  4500979 ACTTACACAGAAGAACCGGTACGATGGTTAACTGCCAACATTCCCTTATCAAGACGGCCGACACGCAGTCCGTAGACAGTTTCACC-CGGCAATGAGCAGAGGTCTTGTCCACTGATCttagcactgaaa--aaatgaa-------tattttgtgTTAATAATTTCAACGC------GTTAACTTACAAATTGATATCATTGAAATTACTGATATACCGCGCCAAACAAAGGTCACCAGTATTTTTTGCATATGGAAAGTAAGTGATATGTTCATGAAAATCGATCGCCGTCACAAATTGGTTCTTCGATTTGTCGACAAGTTTGTGTTTG-AAATACGGCTCATTACTGCGAAACGCGTCCATCGGATGCATGATTTCACGGACCTGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     74582 370 -   201088 gcTCACACAGATGAGCCGGTTCGATGATTAGCTGCAAGCAATCCTTTGTCTAGTCGACCGACACGAACCCCGTAAATTGTTTCACC-CGGCAGGGAACAGAGGTCCTGTCCACTGATTTTTGTACTGAAATCACATAAA--------ATTAATCAGAAACCATTCT---------TTCTCCACTCACAAATTGATATCATTGAAATTACTGATATATCTAGCAAGACAGATGTCACCGGTATTCTTTGAATATGGGAAATAAGTGATATGTTCGTGAAAATCGATAGATGTCACAAATTCATGTTTCGATTTGTCGGCAAGTTTGTGTTTG-AAATATGGTTCTTTTGTCCGAAAGGCATCCATTGGATGCATTATTTCGCGAACCTGC--
i caeSp111.Scaffold409  I 1 I 8
s caePb3.Scfld02_0       3103988 373 +  4147112 ACTCACACAGAAGAACCGGTACGATGATTTACTGCCAGCATTCCCTTGTCGAGTCTTCCGACGCGTACTCCGTAGACGGTTTCACCGGGGCAGCGAGCAGAGATCCTGTCCACTGATTTTTGTGCTGGAAATTCATGAA--------GTCACTTCG----CATTGT----CTATGTTTTTCACTCACAAATTGATATCATTGAAGTTACTGATGTAACGAGCCAAACA-ATGTCACCGGTGTTTTTTGCATATGGAAAGTAAGTGATATGTTCATGAAAGTCCATGGTTGtcacaaattcttttttcgatttgtcaACTAatttgtgtttgaaaaaagggttCTGAACTGCGAAATGCATCCATGGGGTGCATGATTTCTCGAACCTGGA-
i caePb3.Scfld02_0      I 1994 I 1406
s caeJap4.Scaffold17934   242786 384 +   591668 ACTGACAATGAAAGACCCGATCGATGATTAACCGCAATCATTCCTTTGTCAAGACGTCCGACACGAAGTCCGTGAATCGTTTCTTG-CGGCaacgaaaataaattttgccCGCTGATTTTTGTGCTGTAAAGAAACGAGAAAGAATAATTAATTAACAA-GATTGA----ATATTTTTCTTCCTTACAAATTAATATCATTGAAATTGCTAATGTATCTGGCCAGACAAATATCACCCGTATTTTTTGCGTACGGGAAATAAGTGATATGCTCGTGAAAATCGATTGCCGTCACATACTCATTCTTTGATTTATCTGCTAAACTGTGAGTG-AAAAACGGTTCATGACAACGAAACGGATCCATAGGATGCATAATTTCACGAACCTAAAC
i caeJap4.Scaffold17934 C 0 C 0

a score=-4566.000000
s ce10.chrX              4852773 19 + 17718866 AAAGATTAGGT-ATTGATTT
s cb4.chrX              10191155 20 + 21540570 ACACAGCGCATCATCGATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1743951 19 -  4500979 AGGCA-CAAATAATCGATTT
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold409     74960  8 -   201088 ------------AATGATAT
i caeSp111.Scaffold409  I 8 I 8
s caePb3.Scfld02_0       3105767  8 +  4147112 ------------AAAGATGA
i caePb3.Scfld02_0      I 1406 I 3
s caeJap4.Scaffold17934   243170 11 +   591668 ------caa---atctcttt
i caeJap4.Scaffold17934 C 0 C 0

a score=-5438.000000
s ce10.chrX              4852792 25 + 17718866 TCTTCCATGTCATTATTTTTCGTTA-------------
s cb4.chrX              10191175  9 + 21540570 ----------------TTTGTGTCA-------------
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold409     74976 21 -   201088 CCAGcgagtttttaatttttt-----------------
i caeSp111.Scaffold409  I 8 C 0
s caePb3.Scfld02_0       3105778 25 +  4147112 tcattgatttttctctgttgtATTA-------------
i caePb3.Scfld02_0      I 3 I 9
s caeJap4.Scaffold17934   243181 25 +   591668 -------------tttttcttctcaaaatgcatgaaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1743970 15 -  4500979 I

a score=89371.000000
s ce10.chrX              4852817 97 + 17718866 ACTCACCGACAAATGGTCCGTTGGGTCATATTCAACAATGATACGTTCACTGATAAAACGCATCTCACGTTTCAATCCGAATTCGTTGAATCTG-AAA
s cb4.chrX              10191193 94 + 21540570 ACTTACCGAAAGATGGTCACTGGGGTCATATTCGACAATAATGCGTTCACTAATGAAACGCATTTCGCGTTTCAATCCAAATTCATTGTACctg----
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1743985 98 -  4500979 ACTTACCGAAAGATGGTCGGTCGGGTCATATTCAACAATAATACGCTCACTGATGAAGCGCATTTCACGTTTCAGTCCGAATTCGTTGAATCTGcaga
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold409     74997 94 -   201088 actcACCGATAGTTGATCTGACGGGTCATATTCAGCAACAATGCGTTCACTGACAAATCGCATCTCACGTTTCAATCCAAATTCATTGAACCTg----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3105812 97 +  4147112 ACTCACCGACAGATGGTCTGACGGGTCATATTCAACGATAATACGTTCACTAATGAAACGCATCTCACGTTTGAGTCCAAATTCATTGTGTCTG-AAA
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   243206 97 +   591668 acTCACGGATAACGTGTCGGATGGGTCATATTCAACAATAATGCGCTCGCTGATAAATCGCATTTCCCGTTTTAAACCGAATTCGTTGTATCTG-AAA
i caeJap4.Scaffold17934 C 0 I 186

a score=-16295.000000
s ce10.chrX              4852914 52 + 17718866 CAAAATA----AACGTTT-----------CTAAACAGGTAA-----AATAACTCATTTTCTACTTCAAACC-----------A
s cb4.chrX              10191287 75 + 21540570 gaaaattataaaattttgtattatttttattttcaagaaaaggactgtt--------ttcgggaaaaaattccgtcaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1744083 49 -  4500979 gaaaaat-taaagttttg-----------ttTGTAAAACTA-----GTC--------TTCTATCATTAATTTC---------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     75091 53 -   201088 ------t----aatttta-----------attgaaactTTG-----GTTGAATTTGATATAATCGGAGTTTGTATGCT----A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3105909 57 +  4147112 CGAAGTT----GATttca-----------ttttaaacaaaa-----aatgaaact--tttcaatgaaaatttcctTTA----A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   243303 186 +   591668 I

a score=38051.000000
s ce10.chrX              4852966 85 + 17718866 TG------AA----ATAACTCACTCATTTGGACATATTTCTTTAAAAATGTCATCAAATCCAA---TGTCAGGATCAGTCATTGTCACACAACTGAAA
s cb4.chrX              10191362 90 + 21540570 taattct-ta----aAAACTTACTCATTTGGACAAACTTCTTTGAAAATGTCCTCAAATTCCA---AATCGGGTTCAGTCATGATTGAGCAACTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1744132 94 -  4500979 TATGTTT-TATTGTAAAACTCACTCATTTGGACAgcattctttgaaaatatcatcaAATCCGA---GGGTGATTTCAGCCATTGTTGAGCAACTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     75144 90 -   201088 TATGTTT-GT----AAAACTTACTCATTTGGACAAACTTCTGTGAATATTTCTTCAAACCCGA---GATCATCTTTAGTCATTGCAAGACTACTGAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3105966 94 +  4147112 TAAGtgcaaa----aaaactcactctaaTGGACACACTTCTTTGAATATGTCTTCAAATAGAATCGGAACTTCTTGAGTCATTTTTGATCAACTGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   243489 85 +   591668 ----------tgaataatccCACCTTTTCGGACATAATTCTGTGAATATATCGTCAAACTCTA---GATTTCTATCTTCCATTGTCAGCTTACTGAAA
i caeJap4.Scaffold17934 I 186 I 7420

a score=-600.000000
s ce10.chrX              4853051 1 + 17718866 A
s cb4.chrX              10191452 1 + 21540570 A
i cb4.chrX              C 0 I 7731
s caeRem4.Crem_Contig0   1744226 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     75234 1 -   201088 T
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3106060 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   243574 7420 +   591668 I

a score=-7790.000000
s ce10.chrX              4853052 68 + 17718866 GGAAATTCTGGCTAGCAAAAA---ATTGA--------AGTTTAGTGAATAAAACTAAAAGAAA--CACATTAGAA--------TATAAG-
s caeRem4.Crem_Contig0   1744227 71 -  4500979 AGCAAACCGAATTTGCTGCAC---AAATA------CCAGTTCAGTGAa-taaattcttgaaaaattacatGAATA---------ACTAAG
i caeRem4.Crem_Contig0  C 0 I 1601
s caeSp111.Scaffold409     75235 77 -   201088 ACCAGTCTTGCATTTTGTCGATTTTTGTAGAATATCGAATTAAATATA-GGGAATGTACATAA--CAGTTCAACA---------ATTAG-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3106061 81 +  4147112 TGCAATCTTGATTTGCAGCCA---AAGTAGTATATACAAT--AATAAA-AAAGCTATAGTTAA--TACATCACTACTACCTTCTATTAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   243574 7420 +   591668 I
e cb4.chrX              10191453 7731 + 21540570 I

a score=-2217.000000
s ce10.chrX              4853120 69 + 17718866 GTTTGAAA---CACAAAGAGTGTCCAA-----------CTCTTTTATCTTCGAGTCGT--ATCTTCGGCCGCGGCCACGAC------CACT
s caeSp111.Scaffold409     75312 89 -   201088 TTATAACAAAGAATTTAGTATGGGAAAAATTGCCGGGGACACGAGGGCATTTGTTGGGAAAACCTAGGCCACGTCCACAGCGCGTAGCA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3106142 76 +  4147112 GTTGAAGAACGCACGAAGCGCAGGTAA-----------ATGCGTTGTCCTTCAGTGgagaaacctaggccacggccaggAGGC----CACT
i caePb3.Scfld02_0      C 0 I 7430
e caeJap4.Scaffold17934   243574 7420 +   591668 I
e cb4.chrX              10191453 7731 + 21540570 I
e caeRem4.Crem_Contig0   1744298 1601 -  4500979 I

a score=-6363.000000
s ce10.chrX              4853189 833 + 17718866  
s caeSp111.Scaffold409     75401 508 -   201088  
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3106218 7430 +  4147112 I
e caeJap4.Scaffold17934   243574 7420 +   591668 I
e cb4.chrX              10191453 7731 + 21540570 I
e caeRem4.Crem_Contig0   1744298 1601 -  4500979 I

a score=265.000000
s ce10.chrX              4854022 15 + 17718866 ttttttttgtaatat
s caeRem4.Crem_Contig0   1745899 15 -  4500979 ttcatttaaaaatac
i caeRem4.Crem_Contig0  I 1601 C 0
s caeSp111.Scaffold409     75909  7 -   201088 --------aaaaaat
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3106218 7430 +  4147112 I
e caeJap4.Scaffold17934   243574 7420 +   591668 I
e cb4.chrX              10191453 7731 + 21540570 I

a score=-80.000000
s ce10.chrX              4854037 6 + 17718866 aatata
s caeRem4.Crem_Contig0   1745914 6 -  4500979 tttaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     75916 6 -   201088 aggaaa
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   250994 6 +   591668 aatatg
i caeJap4.Scaffold17934 I 7420 C 0
e caePb3.Scfld02_0       3106218 7430 +  4147112 I
e cb4.chrX              10191453 7731 + 21540570 I

a score=-12708.000000
s ce10.chrX              4854043 55 + 17718866 ----attatttataGATGAAAGTATAAAAAAC-----------TTGATGGAAATGCAAATACATAATATA
s cb4.chrX              10199184 31 + 21540570 --------------------ACCAT------------------TTATtagaaaaa-gaatagaaaagttc
i cb4.chrX              I 7731 I 7
s caeRem4.Crem_Contig0   1745920 38 -  4500979 -----------------attactataaacaaa----------atcattacaa-----aatacaaaacaat
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold409     75922 55 -   201088 ----------aatagaaaatactagaaaaaagggcatgaactgtaactataaaaataaataaaaa-----
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   251000 47 +   591668 attccctagaaatggaaataataaaaaaggaa-----------tttatacaa-----agcaaa-------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3106218 7430 +  4147112 I

a score=87338.000000
s ce10.chrX              4854098 338 + 17718866 ------------------------------AAAAAAATATGCGTACAAAATGACATTTTAAAAATATTCGAAAAA-----CAAAAGACAAAGCA----------CAGAGTGTTGCTATTATCCATAACCGGAAT-----TGAAAG---TTCACGGGAAAGAAA---------GAAAAGTCCAGAG--ACTAGACATATGTTTCTTGACGGTAAATTGGGCGTAGTATATCCGGATCTGAAAAT-----TGAAAAGAAAACATAGAAA---AAGTTATCGAAA-AGTGTTAGAGTTA------AGTGATGTGAACGTG----TTGGTGAG-------AGCAAGGTGAGAGCAAAACTCTCATTTT-----TCATTTGTCCTTTTTTCGCATAAATGACAAAAATCCTTTCTTTTTCTTCTTTTTCTCATCTTTT
s cb4.chrX              10199222 343 + 21540570 ------------------------------aaaagaatatgcAAACAGAATGACATGGAGc---------agtca-----gaaaaaagaaagcg----------tAGGAAATT-CCATAATCCACAACCGGAGTGATTAAAAGAG-----Cacgggaaagaaa---------aaagggtcCAGGGAAACTAGACATATGTTTCTTGGCGGTAAACTGGACGCAACATCTCGGAgtctggaaat-----tgagaaatcaaaaaagaactagaaaagagaaagagagaagaagaatag--gaTTAAAATGGTAGATGTG--TGTTCGTGTA-------ATTTGTGTGAGTATTATT-GATTATTGAT----TCTTTTGTCCTTTCTGCGCATGAATGAAAGTAGgcctcttttcttctttttcttctcatccttt
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1745965 332 -  4500979 ------------------------------a----aataTGCATACGAAATGACATG-------------AGTAA-----GTCGaaaaaaaGCA----------CAGAAGAAT-CGATTATCCAAAACCGGAGT-ATAAATAAAG---TTCACGGGAAATAAG---------AAAGGGTCAAGAG--ACTAGACATATGTTTCTTGTCGGTGAATTAGACGGATCATGTCGGCGTCTGGAAGT-----TTTGAAGTAAAAGTAAAAGTGGAGTATTGAGTTC-AAATTGAGAATGGTTGGTTAAAAAGGTGTATGTGACTATTACGGTA-------GGACA-GTGAGTA---------GGTTGAGACGATCACTTCTCCTTTCTTCGCATAAATGACAGTagtcccttctttttctttttcttctcatctttt
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409     75977 331 -   201088 ------------------------------aagaaaatatgcatacaaaatgacatg------------------------------aaaaatgcagaaaaagcCAGAATATT-CCTT-ATCCaaaaccggaaa-ttaaaagaaaaggttcacgggaaagaaaag-------aaaaagtccAGAG--TTTAGACATATGTTTCTTGGCGGTATATTGGACGAAGTATGTCGGGAtctggaaaaa---cagaaaaaagtgaaggaAACAATAGAATAAGTTAA-GGCGTGAGCGTGA--GA--AAAAGT---AATGTT-------ATGTGAA-----AGTTG-GTTAGAAGATCA-GGTAGTTCA-----TTATTTCTCCTTTCGGCGCATAAATGACAacaatccttttttcttctttttcttctcgtctttc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3113648 333 +  4147112 ------------------------------aaggaAATATGCATAC-AAATGACATT------------------------------AAAAGCA----------CAGAATATT-CCAT-ATCCAAAACCGGAGA-AAGTATAAAGAAATTCACGGGAGAGAAaagtatgcaaaaaaaatacaaaa--attaaacATATGTTTCTTGGCGGTAGATTGGACGAAGCATGTCAGAATCTGGAAAG-----AGGAaaggaagatgaaaat----gaatatcaaAA-GAGATGAGCATAG--GACGGAAAGTTTGATTGTT-----TCGTGTGAAAGTTTAGTTG-GTTAGAAGAATG-TGAAATTGG-----TCATTTCTCCTTTCTGCGAATAAATGACAGCagtcccttcttctttttcttcttttcgtctttG
i caePb3.Scfld02_0      I 7430 C 0
s caeJap4.Scaffold17934   251047 348 +   591668 aaaaaggtcagaaaaatcagaaaaaaaaaacaaaaaatatgcaAAC--AATGACATG-------------GATAGCTTTTGGAGAAACACAGCA----------CGAAGTGGT-GCTT-ATCCAAAACCGGAAT-----ACATAG---TTCACTGGAAAGAAA---------AAAGGGTACGGAGTTACTAAACATAAGTTTCCTGTCGGAAATTAGAGTGTAGCAAGTCGGCGTCTGTAAAAGTATTTCAATaggaaaaagaaatt----------------aaacTTAAAACAT--GAATAATAGTTAGATTATT----TTT------------GGCTG-GTTAGATGCTAA-CGTAACACGG----TTATTTGTCTTTTCTTCGCATAAAAGACAAAAGtcctttcttcctttttttgttctcttccTT-
i caeJap4.Scaffold17934 C 0 C 0

a score=-22048.000000
s ce10.chrX              4854436 117 + 17718866 GTAGGCTTCTGAAA-TAAAAAACGGTGTAAAATAAGTGCTTGATTAGTCCCAAAAGCAGAGAAGTTAGCAAATATTTCAATCTTATTTGAAGGTAGAGTAGAGTCAGTGGGGTTTTGC
s caeRem4.Crem_Contig0   1746297  44 -  4500979 gcGTGTTTCTGGAATTAGAAAATGCA---------------GGTTAGT---------------TTGAGTTAGTT--------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     76308  52 -   201088 ACTCGACTCTGAAAGTAGTTAGTG----------------------TT---------------GTGAGTAAGTATT-------------------------GATCAG----GTTTTGA
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3113981  56 +  4147112 ACTCGACTCTGAAA-TAGTGAGTGAA-------------------AAT---------------ATTAGTACATTTT------------------------GGGTTAGT---Gttatga
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   251395   9 +   591668 --------------GTGGTGGGC-----------------------------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10199565   0 + 21540570 C

a score=-260.000000
s ce10.chrX              4854553 11 + 17718866 CCAAAAT----------AACA
s caePb3.Scfld02_0       3114040 20 +  4147112 -caaatttaattttctcaATG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   251404 11 +   591668 CTGAAAT----------GACA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10199565  0 + 21540570 C
e caeSp111.Scaffold409     76360  1 -   201088 I
e caeRem4.Crem_Contig0   1746341  0 -  4500979 C

a score=-521.000000
s ce10.chrX              4854564 28 + 17718866 GAAAACAGTTTATATATAGAGAATACAA
s caeRem4.Crem_Contig0   1746341 11 -  4500979 ---CATAGTTTATA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3114060 10 +  4147112 GAACATAGTT------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   251415  0 +   591668 C
e cb4.chrX              10199565  0 + 21540570 C
e caeSp111.Scaffold409     76360  1 -   201088 I

a score=-10615.000000
s ce10.chrX              4854592 101 + 17718866 CTGTAAAAAGtttaattttttcattgaatttttttaaaa-tttttcagaaattgttaaaatatcaaaaaaaaacttctaatttgaaaaaaaacat-------------------tattaaa
s cb4.chrX              10199565  48 + 21540570 ------------------------------ttctaaaaa-ttttagattgttt---------tcAG------------CACTTGAAAAGAAAGGA---------------------TTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1746352  37 -  4500979 --------AGT-----------------TTTTCATCAAG-TTTGAGATAAACt--------------------------acttgaaaaa--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3114070  75 +  4147112 CT----ACAGT-----------------TTTAATTGAGGTTTTTCGATTAATC-------------------------AACTTGCAATAAAATGccgctgatcatttttttttcttctaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   251415   0 +   591668 C
e caeSp111.Scaffold409     76360   1 -   201088 I

a score=-59.000000
s ce10.chrX              4854693 6 + 17718866 aattta
s caePb3.Scfld02_0       3114145 1 +  4147112 -----a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   251415 0 +   591668 C
e cb4.chrX              10199613 0 + 21540570 C
e caeSp111.Scaffold409     76360 1 -   201088 I
e caeRem4.Crem_Contig0   1746389 0 -  4500979 C

a score=-10947.000000
s ce10.chrX              4854699 94 + 17718866 atatattaCTTTATAGTTTTTCTGTTATTTATGGCAAGAAACCTCATTCTTTTTTAAGTTTGAAACATTTGAAAAACTATTTGCTTCCAAAAAT-----
s caeRem4.Crem_Contig0   1746389 33 -  4500979 ------------------------------------------ttcagacgttttct-------------------atttcttcagAATCAGATT-----
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       3114146 72 +  4147112 atctat--ctatcccatttttcaaat-tcta-----------ttcATTCGGTTTCCAGttg-----attc---aaactttttcagtttcaaaat-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   251415 47 +   591668 ---------------------------------ATACaccaatttatttatttttt-------------------tttttttcaaatttgaagtGCCTG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10199613  0 + 21540570 C
e caeSp111.Scaffold409     76360  1 -   201088 I

a score=0.000000
s ce10.chrX              4854793 1 + 17718866 T
e caePb3.Scfld02_0       3114218 2 +  4147112 I
e caeJap4.Scaffold17934   251462 0 +   591668 C
e cb4.chrX              10199613 0 + 21540570 C
e caeSp111.Scaffold409     76360 1 -   201088 I
e caeRem4.Crem_Contig0   1746422 5 -  4500979 I

a score=16336.000000
s ce10.chrX              4854794 128 + 17718866 CTTACTTCTTCTTCAGACGCTGTAGTGCACGATCGAGACGTTGTATTGCCTAAATGTTACAACTCAGTTATTGATT------AGTTAGCTGATGCGCTCGAAAAAAAA--GTGA---------AA-------------------ACACAAATAGACACCACGTA
s cb4.chrX              10199613 125 + 21540570 CTCACCTCTTCTTCGGACGCCGTTGTACAGGATCGCGATGTAGTAGTGCCTGAAGAGG------------TTAAT-------TGTTAA---------------TAAAA--GTGAATTTAGAGCAAGAAGTTGTAT---TGATTGGTATACATAGAGACCACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1746427 128 -  4500979 CTTACCTCCTCCTCAGAAGCAGTTGTGCAAGATCGAGATGTTGTATTACCTGAAGAGT------------TTTATTAGTATGTGTTAT---------------TCGAA--GCGATT-------AGGGACATATATCCATAAATAGTGCAAGTAGAGACCACTGA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold409     76361 129 -   201088 cttacttcttcttctgatgcAGTTGTGCAAGAGCGAGATGTTGTTGTGCCTG--GAATG---------GCTTGTTTCATAGTGGTTATCAG-------TGGAATTCAA--GTAA---------AA------GCATAGTTTTTAGATACAAAGAGACACCATGAA
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3114220 120 +  4147112 cttaCCTCTTCCTCAGATGCGGTTGTACAGGATCGTGATGTTGTTGTACCTGAAGAGTG---------TGTTAATTTA----GGTTAT---------------TTCAAACGTGA---------AAAATCCGACATGATTC-------CATAGAGACACCATAGA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   251462 102 +   591668 CTTACTTCTTCTCCAGATCCCGTGGTGCACACTTTGGACGAGGTAGGGCCTAAA----------------TTAGTTAT----TGATGT---------------TAAAG--GTTATT-------AA------------------AACTCAAAAAGTCACTATGTA
i caeJap4.Scaffold17934 C 0 I 49

a score=23662.000000
s ce10.chrX              4854922 47 + 17718866 GTTACAAATATACCTTCACTTGTTCCTTGAGTCGACGAAAATCGCGT
s cb4.chrX              10199738 47 + 21540570 TTTACACTGTTACCTTCGCTGGTTCCTTGCGCTTCCAGACACTGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1746555 47 -  4500979 ATAACATTGTTACCTTCACTTGTTCCCTGCGCTTCCAGACTTGGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     76490 47 -   201088 GTTACAATTTTACCTTCACTTGTTCCTTGTGTTTCCAAACACTGCTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3114340 47 +  4147112 TTTACAATGTTACCTTCACTAGTTCCTTGGGCTTCTAAACACGGCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   251564 49 +   591668 I

a score=127564.000000
s ce10.chrX              4854969 273 + 17718866 --CATTTTAACTTTTTCAGGGTACTCTG-TCGAAATTGACATCGGAGAAGGGTGATCGCCTGTACACAAAGAGTTAGAAAATCTGTGAA-------AGTTATAA----AAAGCTTTGAAGCCACCACACACATGC-TACACAGAAAGAATAAGGAAAATAAACCTACAATCGAACACAACTGACTGGCTCATGTACGACGTATTGACGCTTTCTTCGGAAGTTCGGACTGGAAATATGGA---AAATAGG----CATTCAAATAA----TTTAAAACACTG----GAAAAC-------------------AAAGCGATAGAA
s cb4.chrX              10199785 264 + 21540570 --CTCGTCGAACTTCTCAATTAACATCG-GTGACATTGACACGGGGAAAGACGGGTCACCTGTACAT--AGTGTTAGATAGACTGTGAG-------AGTTAGAAAGTTAGAAACAGAAAG------CACACGTGC--ATAtagaaagtggaaaaaagg-TAACCTACAATCGAACACAACTGACTGGCTCATATACGACGTGTTGACGCTTTCTTCGGAGGTTTGAACtggaaa-atcaactgaaatacG----CATTCCAAAag----taatc-----------aaaaaatc-----------------acaaaaggAGAA
i cb4.chrX              C 0 I 822
s caeRem4.Crem_Contig0   1746602 285 -  4500979 --CTCGTTGGGTTTCTTATTTAATTCGG-GTGACATTGACATGGGGAAAGAGTGGTCACCTGTACAT--AGAGTTAGATATATTGTGAA-------AGTTAGAA----AGAGTTGGAAAT------CACACATGc-aacacaaaaagagaaagaa----taacCTACAATCAAACACAACTGAGTGGCTCATGTACGATGTATTGACGCTTTCTTCGGAAGTTTGAACtggaaa-ataaactgaaagtGG----CATTCGAAGAA----GTATC-ACGAGGGGAAAAGCAATCGGATAGGattgaagcaaaaaaaagaaaaa
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold409     76537 261 -   201088 --CTCATTTGCTTTCTCAATTAACACTG-GAGACATTGACACGGGGAAAGAGTGGTCACCTGTACAT--AGAGTTAGATAGATTGTGAA-------AGTTAGAA------AGTGAACAAG------CACACATGC-AAagcaaaatgagaaaatga---taacCTACAGTCGAACACAACTGACTGGCTCATATACGATGTATTGACACTTTCTTCGGAAGTTTGGACTggaaa-atcaactgaaataGG----CATTCCTAGAA----GTTTC-ACgtgg----aaaaga-------------------aaggaagtagaa
i caeSp111.Scaffold409  C 0 I 16
s caePb3.Scfld02_0       3114387 262 +  4147112 --CTCGTTGGGTTTTTCTATCAACGCTG-GTGAAATTGACACAGGGAAAGAGTGGTCACCTGTACAG--AGAGTTAGATAGATTGTGAA------GAGTTAGAA------AGTGAGTAAG------CATACATGC-Atcacaagaaaagaaaaaga---taaccTACAATCGAACACAACTGACTGGCTCATATACGAGGTATTGACGCTTTCTTCGGAGGTTTGAACTggaaa-ttgaactgaaatagG----CATTCCTAGAA----GTTTC-ACATTG----AAGGAA-------------------GCAAAAGTATGA
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17934   251613 280 +   591668 cattttttttatttcgggCTCTACTCAGAGTGGCGCTGAAGATGATAATAACTTTTCATCCAAACAA--AAGGAACAAGACATTATTAACAGCATTGGTCAAGTGTTAATGATAAAAAAG------CTCACATGCCgatagaaaaaaagcaaagag---aAACCTACAGTCAAACACGGCTGAATGACTTGTGGATGAAGTGGTGACGCTTTCCGCGGACGATGGAATTGATAA-GTAAACTGAAATGGGTAGACATTCCAAAAGATATGTTTT-CTATCA----CAAAAA-------------------ACCAAG------
i caeJap4.Scaffold17934 I 49 C 0

a score=-9579.000000
s ce10.chrX              4855242 35 + 17718866 --AACAGGCGCATCG-ATAAAATGTGAAGGAGCAACCA----------------
s caeRem4.Crem_Contig0   1746902 23 -  4500979 -----AG---------ATAGCATAC-CGGGACAATGTA----------------
i caeRem4.Crem_Contig0  I 15 I 2
s caeSp111.Scaffold409     76814 26 -   201088 --aaaaa---------attaaaaat-catgaGAGGCCA----------------
i caeSp111.Scaffold409  I 16 I 18
s caePb3.Scfld02_0       3114661 35 +  4147112 --AAGAAACTAATAATATTGCAAGA-AAGGAAAAGTGC----------------
i caePb3.Scfld02_0      I 12 I 18
s caeJap4.Scaffold17934   251893 44 +   591668 TCAAGGA---------AATATAAAG-AAGCAAAAACTACAAAGACAAAGTTTTG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10200049 822 + 21540570 I

a score=77158.000000
s ce10.chrX              4855277 126 + 17718866 CAT-------AAAAATTACCATTATTC-----------GGGGAGATTCCGGCATTCAGGCCGTCGTCAGATGCGCTCAGAGCCGCTTGAGAAAGTTTATGTTCTCGTACTCCTTGCATTAAGGAAACTGTATCTGG--AATAATTT
s cb4.chrX              10200871 136 + 21540570 caa-------ataatttacCGTTGTTC-TG-ACTTGTTGGAGAGATTCCAGCATTCAATCCATCGTCAGAAGCACTCAAGGCTGCTTGGGAGAGTTTGTGCTCTCTAATACCTTGCATTAGCGATACTGCATctgaataaacatt-
i cb4.chrX              I 822 C 0
s caeRem4.Crem_Contig0   1746927 132 -  4500979 CTT-------TCAATTTACCGTTATTTGTG-AC----AGGGGAAATTCCTGCATTCAATCCATCATCAGATGCACTCAAAGCGGCTTGCGAAAGTTTATGCTCTCGGACCCCTTGCATTAACGAAACCGTATCTTA--AATCAGTT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409     76858 123 -   201088 ATA-------TTAACTTACCATTAGTT-TGAAC----AGGTGATATTCCAGCGTTCAATCCGTCGTCGGATGCACTCAGAGCAGCTTGTGATAGTTTATGCTCTCTAACTCCTTGCATTAGAGACACTGTGTCTG-----------
i caeSp111.Scaffold409  I 18 C 0
s caePb3.Scfld02_0       3114714 136 +  4147112 ATAAAACTACCCAATTTACCATTATTC-TGTAC----TGGAGATATGCCAGCATTCAATCCATCGTCAGAAGCACTGAGAGCTGCTTGTGAGAGTCTGTGCTCTCTTACTCCTTGCATAAGAGATACAGTATCtaa--aatca---
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17934   251937 132 +   591668 CAA-------GAAACATACCACTGTTT-TGAAG----CGGTGAAATTCCAGAGTTCAAACCATCGTCGGAGGAGCTCAAAACGGTTTGGGAAAGCTTGTGTTCACGAACTCCTTGCATTAAAGACACGGTATctaa--aattgtat
i caeJap4.Scaffold17934 C 0 C 0

a score=182.000000
s ce10.chrX              4855403 2 + 17718866 TT
s caeJap4.Scaffold17934   252069 2 +   591668 tt
i caeJap4.Scaffold17934 C 0 I 7890
e caePb3.Scfld02_0       3114850 0 +  4147112 C
e cb4.chrX              10201007 0 + 21540570 C
e caeSp111.Scaffold409     76981 0 -   201088 C
e caeRem4.Crem_Contig0   1747059 0 -  4500979 C

a score=-905.000000
s ce10.chrX              4855405 6 + 17718866 GAAAAT-------
s cb4.chrX              10201007 8 + 21540570 -----ttttattt
i cb4.chrX              C 0 I 20
s caePb3.Scfld02_0       3114850 6 +  4147112 gaaagt-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e caeSp111.Scaffold409     76981 0 -   201088 C
e caeRem4.Crem_Contig0   1747059 0 -  4500979 C

a score=0.000000
s ce10.chrX              4855411 16 + 17718866 CGGCTGGTTACAACTA
e caePb3.Scfld02_0       3114856  0 +  4147112 C
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I
e caeSp111.Scaffold409     76981  0 -   201088 C
e caeRem4.Crem_Contig0   1747059  0 -  4500979 C

a score=-1859.000000
s ce10.chrX              4855427 90 + 17718866 GAGAAGCTATTTTTAGACCTTTGTCAGCAATATATTTTCAAAAATATATTTTGTAAGTGGAGCCAAAAAGAACATACTCAAAACAAGTGG
s caeSp111.Scaffold409     76981 20 -   201088 -------------------------------------TCAAAA--------TGCGAGTAAATTCA-------------------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3114856  0 +  4147112 C
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I
e caeRem4.Crem_Contig0   1747059  0 -  4500979 C

a score=-1706.000000
s ce10.chrX              4855517 55 + 17718866 CATCCCACAAGTGTTTTGAACCCCAGATTTTCAGTTAAAAACTCGCAACACAACA
s caeRem4.Crem_Contig0   1747059 16 -  4500979 ---------------------------CATTCAATT------------CACACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     77001 15 -   201088 ----------------------------TTTAAATC------------CATAATA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3114856  0 +  4147112 C
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I

a score=0.000000
s ce10.chrX              4855572 50 + 17718866 TGGATTTTTTGCAGTGTTTATTTTATTTTATTACGTTTTAAATAAAGGAA
e caePb3.Scfld02_0       3114856  0 +  4147112 C
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I
e caeSp111.Scaffold409     77016  0 -   201088 C
e caeRem4.Crem_Contig0   1747075  0 -  4500979 C

a score=-3133.000000
s ce10.chrX              4855622 56 + 17718866 TTTCAGTTTTCGTTTTCAAAAACGACTTTAAAAATTGCTGTTTTTTTGTTTCAGCT
s caeRem4.Crem_Contig0   1747075 20 -  4500979 TTCCGTATC----TGTAATTGAAA--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3114856 31 +  4147112 tttcaaatttcgatatAAATGTCAACACTAG-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I
e caeSp111.Scaffold409     77016  0 -   201088 C

a score=191.000000
s ce10.chrX              4855678 2 + 17718866 AC
s caeSp111.Scaffold409     77016 2 -   201088 AC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3114887 0 +  4147112 C
e caeJap4.Scaffold17934   252071 7890 +   591668 I
e cb4.chrX              10201015 20 + 21540570 I
e caeRem4.Crem_Contig0   1747095 0 -  4500979 C

a score=-28.000000
s ce10.chrX              4855680 3 + 17718866 CTT
s caeRem4.Crem_Contig0   1747095 1 -  4500979 --C
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     77018 3 -   201088 CAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3114887 1 +  4147112 --T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   259961 3 +   591668 CTC
i caeJap4.Scaffold17934 I 7890 C 0
e cb4.chrX              10201015 20 + 21540570 I

a score=164719.000000
s ce10.chrX              4855683 301 + 17718866 ACCAGCTTCAACCTCATCGTATTGAGAGTAAC------CACTTCTCGCTGAG---ACAGGA-GCGCTTTGCGAGTTCTTGGC--------------------------------------------CTTCACCATGTCTACATATTTCTTGATGTCTGCATCAGTTTCTACAGAGAATGGATTCGGCGCATAGATTTGGTGGTACACCTGAGCATGATGCTGAAATTGCCTATCAATGATTCCCTTGCTGGCAGTTCCGATAAGTATTGCTCGGTCAGCGGTCGAGCTCTGTCCGACTGTTCCGTCATTATCAGGCTGAAAG-ATTACAAAATAATAAATGAATTTTCAAGACGGG
s cb4.chrX              10201035 291 + 21540570 ACCAGCTTCCACGTCATCATATTGAGAATAGCTCATTACACTTCT----------AGGGGTAGTTCCTTGGGCATTCTTCGC--------------------------------------------TTTTACCATAGCCACATACTTACGAATATCTTCATCGGTTTCAATGGAGAATGGGTTCGGTGCATAGATTTGTTGATAAACTTGAGCGTGATGTTGATACTGTCGATCAATGATTCCTTTGCTAGCGGTTCCGATGAGAATTGCGCGATCAGATGAAGAACTTTGTCCGATGGTACCATCAGAGtctggctgaaaa-----------tattgGCATATTTTTAATTCGGG
i cb4.chrX              I 20 I 330
s caeRem4.Crem_Contig0   1747098 296 -  4500979 ACCTGCTTCACAATCATCGTATTGTGAGTAACTCATAGCCGTTCTCGCTGACGAGAACGGT-GTCCCCATAGCATTCTTAGC--------------------------------------------TTTCACCATGGCAACATATTTCCTAATATCTTCATCAGTCTCAACTGAGAATGGATTCGGTGCATAAATTTGATGATATACTTGCGTGTGGTGTTGATATTGCTTATCAATGATTCCCTTACTAGCCGTTCCGATAAGAATTGCTCGGTCGTTAGTGGAACTTTGTCCAACGGTTCCGTCGGAACTTGGCTGGAA---------------TGGAAAATTCTTTGATCTAG
i caeRem4.Crem_Contig0  I 2 I 15
s caeSp111.Scaffold409     77021 293 -   201088 ACCTGCTTCCACTTCATCGTATTGCGAATAACTCATGGCCGTACGAGAGGAGTCTGGTGGA-GTACCTCTAGCGTTTTTAGC--------------------------------------------CTTTACCATTGCAACATACTTCCTGATGTCTTCATCAGTTTCGATAGAAAATGGATTCGGTGCATAAATTTGTTGATATACTTGAGTGTGATGTTGATATTGTTTGTCAATGATTCCTTTGCTGGCAGTTCCAATCAGAATAGCGCGGTCGGCAGCAGTACTCTGTCCAATTGTTCCTTCGTTGTCCGGctggaa------------------ttcatttttgatttaaa
i caeSp111.Scaffold409  C 0 I 14
s caePb3.Scfld02_0       3114888 264 +  4147112 ACCTGCTTCAACATCATCATATTGTGAATAACTCATAGCTGATCTAGCAGAATCTGGTGGT-GGTCTTCTTGCATTCTTCTC--------------------------------------------CTTAACTGATTCTACGTATCTTCTGAGGCCTTCTGCAGTTTCCATTGAGAATGGATTTGGTTGATAAATCTGGTGGTACACTTGAGCATGGTGTTGATATTGTCTATCAATAATTCCTTTGCTGGCAGATCCAATGAGCTTAGCACGATCCGCAGCGGAGCTGGGACCCA------CTTCGTCGTCCGG-----------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   259964 347 +   591668 ACCGGCTTCAACATCATCGTATTGAGAGTAACTCATATCAGTTTTTGCCGTTGAATGGGGA-GAgtttttcgaacttttttcTTTGACCTGTAACATGAGTATAAACTTTTTTCAGCAACCGAACACTTTACCAgttccacgtattttttgaTATCCTCATCCGTTTCCACCGAAAATGGGTTAGGAGCATAAATTTGACGGTAAACTTGAGCATGATGTTGATATTGTTTATCGATGATTCCTTTACTAGCAGTTCCAATAAGAATTGCACGATCAGCAGTTGTACTCTGTCCAATGGTGCCGTCACTGTCTGGctgaaaaaaagataaaaaagaagataaatcTTC--------
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4855984 1 + 17718866 A
e caePb3.Scfld02_0       3115152 0 +  4147112 C
e caeJap4.Scaffold17934   260311 0 +   591668 C
e cb4.chrX              10201326 330 + 21540570 I
e caeSp111.Scaffold409     77314 14 -   201088 I
e caeRem4.Crem_Contig0   1747394 15 -  4500979 I

a score=181832.000000
s ce10.chrX              4855985 227 + 17718866 -TATTTCAC----TTTAATCAATAG-TGCAATGTCTTCATATGTCACACTGTCCAAAATCTGGCTTTGTGGTCCAGCAGAAAGAGTTCCCAGTCTGTTGTTTTCTTTGATAGCTTTTTGTTTTTCTTTAAATTCTTTAGGATTTGAAGACGCAGGACTGAATTGATGAACACTGCTGATTTTGACAGGGGTTCCACTCGCGGATGGAACGTTGACGTCATGAACCCACTGAAA
s cb4.chrX              10201656 227 + 21540570 -TATATTAC-----CTGAATAACAATTGAAATATCTTCATAAGTGACACCATCCAAAATCTGACTCTTTGGACCGGGAGTGACAGTTCCTAGACGATTATTCTCTTTGATTGCCTGCTGCTTTTCTTTGAACTCCTTAGGGTTCGAAGAAGCAGGACTGAACTGGTGAACACTGCTAATTTTGACTGGAGTACCGCTTGCAGATGGGATGTTAACGTCGTGGACCCACtgtaa
i cb4.chrX              I 330 C 0
s caeRem4.Crem_Contig0   1747409 226 -  4500979 --AACTTAC----TTTGACTAACAG-AGAGATGTCTTCATAGGTAACATGGTCCAAAATTTGACTTTGTGGTCCTGCGGTAACTGTTCCCAAACGATTGTTTTCTTTAATTgctttctgtttctctttgAATTCTTTAGGATTTGCAGATGCTGGACTAAACTGATGAACACTGTTTATCTTGACCGGTGTTCCACTTGCAGATGGTACGTTCACATCATGAACccactaaaa
i caeRem4.Crem_Contig0  I 15 I 29
s caeSp111.Scaffold409     77328 227 -   201088 ----TTTAC-CTTTGTTATCAAAAG-AGATATGTCTTCATAAGTGACATTATCCAAGATTTGACTCTGAGGTCCTGCAGTAACAGTTCCCAATCggttgttttcttttattgctttctgtttctctttgaaCTCTTTTGGATTAGAAGACGCTGGACTGAACTGATGAACACTAGTTATCTTAACTGGTGTTCCACTGGCTGATGGCACGTTCACGTCATGAACCCACTGAAA
i caeSp111.Scaffold409  I 14 C 0
s caePb3.Scfld02_0       3115152 222 +  4147112 ----------TCTTGTGATCAGAAG-TGAGATATCTTCATAAGTAATACCATCAAGAATCTGACTCTGTGGACCAGCATTAAGAGTTCCTAAACGGTTATTTTCTTTGATCgctttctgtttctctttgaattcttttggATTCGAAGATGCTGGACTGAACTGATGAACACTGTTGATTTTGACGGGTGTTCCACTTGCAGATGGACCATTGCCGTCGGAGACCcactggaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   260311 232 +   591668 TTCTCTTCCAAACCTTAACCATTAG-ATAAATGTCTTCATAAGTAACACTTCCCAGGATTTGACTTTGCGGTCCAGCTGTCATTGTTCCCAGTCGGCTACTTTCTTTGATAGACTTTTGCTTTTCTTTAAACTCTTTTGGATTAGAAGATACTGGGCTAAACTGATGAACACTGTTTATTTTGACCGGTGTTCCGCTTGCCGATGGAACGTTCACGTCGTGAACccactacaa
i caeJap4.Scaffold17934 C 0 I 25

a score=-96.000000
s ce10.chrX              4856212 1 + 17718866 T
s cb4.chrX              10201883 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     77555 1 -   201088 T
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115374 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260543 25 +   591668 I
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=3.000000
s ce10.chrX              4856213 2 + 17718866 GA
s caeSp111.Scaffold409     77556 2 -   201088 AA
i caeSp111.Scaffold409  C 0 I 11
s caePb3.Scfld02_0       3115375 2 +  4147112 ca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260543 25 +   591668 I
e cb4.chrX              10201884 0 + 21540570 C
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=-4316.000000
s ce10.chrX              4856215 363 + 17718866 TTTGAACTTGTGTAAATTTAAAACACTTTAAAATTAATTTTTTCTCCAATGATTTATCATAGATGTTTAATTTGAACTCAATAACCAAATGCGACCGAATTTTATAATGAGACTTCTCAAAAAACTTTAATACATATTTTTATTGCGGATCAAAATTTTCAAAACACAATTAGGCACAGCCTGAATCGATAGTTG--GTATTGGAGCAATTTTGAACATTTTCTGACACTACTCCA----ATATTGAAAAATACATTTTTTTATTGCGTTAGCATAACATGTATTCATAATGTGCATAATGACAACAATCCAAAAATTAGTGACATAGAAATTATCCAAAACAAAAATTCACTAGTAGGGCCCACCCAT
s caePb3.Scfld02_0       3115377 179 +  4147112 aaaaaggttcgggaaa---aaaaggaaggaaaat--------------attatctatga---------------------------aaatg---------------------------gaaaaactttGTCA------------GCAAATGGAAATT--------GGAATCAGACA------AAATCGCTGCTCGATGTATTG------------AGATTTTACGAACTAACGCCAGAAGATAATGAAAAGTACGTGCTTTCTTC----------------------------------TGACGATAATCAAA-----------------------------------------------CCAACTCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260543  25 +   591668 I
e cb4.chrX              10201884   0 + 21540570 C
e caeSp111.Scaffold409     77558  11 -   201088 I
e caeRem4.Crem_Contig0   1747635  29 -  4500979 I

a score=0.000000
s ce10.chrX              4856578 117 + 17718866 ATCATAGCTATTTGGGTTTTCAAATCTCTGTTTATAGTTTTTAATTTAATGTTTCTTCAAATTTTTTTGTACATTTATATGAAAATAACTGTGTAAACATAATGACACAAACCATCA
e caePb3.Scfld02_0       3115556   0 +  4147112 C
e caeJap4.Scaffold17934   260543  25 +   591668 I
e cb4.chrX              10201884   0 + 21540570 C
e caeSp111.Scaffold409     77558  11 -   201088 I
e caeRem4.Crem_Contig0   1747635  29 -  4500979 I

a score=820.000000
s ce10.chrX              4856695 16 + 17718866 GAAGTTCATGTACAAA
s caePb3.Scfld02_0       3115556 16 +  4147112 GAAATTTAGTTACAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260543 25 +   591668 I
e cb4.chrX              10201884  0 + 21540570 C
e caeSp111.Scaffold409     77558 11 -   201088 I
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=-225.000000
s ce10.chrX              4856711 16 + 17718866 TTTTATTTTCGTACTG
s cb4.chrX              10201884 16 + 21540570 tttagtttttttcttg
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3115572  1 +  4147112 ---------------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260543 25 +   591668 I
e caeSp111.Scaffold409     77558 11 -   201088 I
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=847.000000
s ce10.chrX              4856727 7 + 17718866 CAAAAGT
s cb4.chrX              10201900 7 + 21540570 aaaaagt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     77569 7 -   201088 CAATAAT
i caeSp111.Scaffold409  I 11 C 0
e caePb3.Scfld02_0       3115573 0 +  4147112 C
e caeJap4.Scaffold17934   260543 25 +   591668 I
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=-149.000000
s ce10.chrX              4856734 9 + 17718866 TGAAAACAG
s cb4.chrX              10201907 7 + 21540570 caGA--TAA
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold409     77576 9 -   201088 TTGGAATAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115573 3 +  4147112 ------TAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   260568 9 +   591668 TGGATACAA
i caeJap4.Scaffold17934 I 25 C 0
e caeRem4.Crem_Contig0   1747635 29 -  4500979 I

a score=266410.000000
s ce10.chrX              4856743 299 + 17718866 ---TTCTTACTTTAGTTATCTTCTTTGGGTTATCTGCTCCATACTCCAAAAATTCAACCTTCTGATATGCATTTGGACTGTTCATCCAACGAACCCGCTCCTGCTCCTTGCGCAGTAAAGCCAGACGATGTGCAGATACACTTTCCAAGTTTGTTTCATCAATTTGTCCATAAGCTGATGTAGTTGGCGGAACAGCAACATCATTGTTGTTCACCATTGACGTAGACATTGCAGATTTGGGCCGCAGTTGTGGTTGACGATAGACGTGCCCGGTTTGAAAATTCTATAATTAGT-----------AGCAATTT
s cb4.chrX              10201916 299 + 21540570 ---TTCTCACCTTGGTAACTTTCTTTGGATTATCTGCTCCATACTCCATGATTTCCACTTTCTGATATGCATTCGGACTATTCAACCAACGGACTCGCTCCTGTTCCTTGCGCAACAATGCGAGACGATGAGCAGAGACGCTCTCCAAGTTTGTCTCATCGATTTGTCCGTATGCTGACGTAGTTGGTGGAAGTGCCACGTCGTTGTTGTTCACCATAGATGTAGACATTGCAGACTTTGGTCTAAGTTGGGGTTGACGATAGACGTGTCCAGttcggaagttctgaaaataaa-----------ttgaattg
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1747664 299 -  4500979 ---TTATTACCTTTGTCACTTTTTTAGGATTATCAGCTCCATACTCCATGAACTCCACTTTCTGATATGCATTTGGACTATTCAACCAACGAACCCGTTCTTGTTCCTTACGCAATAAAGCGAGACGATGAGCAGAAACACTCTCCAAGTTGGTCTCATCAATTTGTCCGTATGCTGACGTAGTTGGAGGAAGAGCGACATCATTGTTATTCACCATAGAAGTAGACATTGCAGACTTTGGCCGGAGTTGTGGCTGGCGATAGACATGTCCTGTCCGAAAGTTCTGTAATTAGT-----------TGGAATCA
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold409     77585 306 -   201088 ---TGACTACctttgttattttctttgGATTGTCTGCTCCATACTCCAAAAACTCGACTTTCTGGTATGCATTCGGGCTGTTTAACCAACGATATCTTTCTTGTTCCTTGCGCAATAAAGCGAGACGACGAGCAGAAACACTTTCCAAGTTGGACTCATCTATTTTTCCGTATGCTGACGTAGTCGGTGGAAGAGCTACGTCATTATTATTGACCATGGAAGTAGACATTGCAGACTTTGGACGAAGTTGTGGCTGACGGTATACATGGCCAGTGtggaaattctaaaattgat----GGTTTTATGGAATTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115576 310 +  4147112 ---AACTAACCTTCGTAATTTTCTTTGGATTATCTGCTCCATACTCCAAGAACTCCACTTTCTGATATGCATTTGGACTATTCAACCAACGAACCCGTTCTTGTTCTTTACGCAACATTGCGAGACGATGAGCAGAAACACTCTCCAAGttagtttcatcaattttcccGTATGCTGACGTAGTTGGCGGAAGAGCGACATCGTTGTTGTTCACCATAGATGTAGACATTGCAGACTTTGGTCGGAGTTGTGGCTGACGATAGACATGTCCCGTGCGGAAGTTCTGTAATTAACAACAGACGGAATggatttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   260577 298 +   591668 TTTTCTGAACCTTGGTTATTTTCTTTGGGTTATCCGCTCCATACTCTAAGAATTCCACTTTTTGATAATTGTTAGGGCTGTTCAGCCAACGagctctttctttttctttacgAAGCAAAGCCATGCGATGTGCATTGACACTTTCCAAGTCTTGCTCATCGACCTGACCATATGCGGAGGTAGTTGGCGGTAGAGCTACGTCATTATTATTTGTCATTGACATGGACATTGCAGATTTTGGACGAAGTTGTGGTTGACGGTACACATGACCAGTacgaaaattct----ttaaa-----------aacaCTTT
i caeJap4.Scaffold17934 C 0 I 29

a score=-12468.000000
s ce10.chrX              4857042 40 + 17718866 TTAGTGAAACAACTGTGAGCAGGGCGAAAAAATTCTG-CTC
s cb4.chrX              10202215 30 + 21540570 tT---TCAA-AACTATAAT-------ACAACTTATTATATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1747963 31 -  4500979 TGAGAACAA-ACTTGTGAT--------TGTTTTCTTA-GTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     77891 17 -   201088 ACAGATAAA-GAATG-----------------------CTC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115886 16 +  4147112 gt-gagaaa-aaatg-----------------------caT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   260875 29 +   591668 I

a score=94012.000000
s ce10.chrX              4857082 95 + 17718866 ACCGCATGATCCAACACTCTCATCCAAGACTCCCATTCTAATTCTCCGACTCTCCAATCAACTGTTCCATTTCGTTTCAGGGAATTCGCTACAAA
s cb4.chrX              10202245 95 + 21540570 ACCGCATGATCCAGTACTCTCATCCATGATTCCCACTCTAGTTCTCCGACTCGCCATTCAACAGttccatttcttttcaaagagttggctgaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1747994 95 -  4500979 ACCGCATGATCCAGAACTCTCATCCAAGATTCCCATTCTAGTTCTCCAACTCTCCAATCAACAGTTCCGTTTCTTTTCAGGGAATtagctgaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     77908 95 -   201088 ACCGCATGATCCAAAACTCTCATCCATGATTCCCATTCCAATTCTCCGACTCGCCAGTCAACAGttccgtttcttttcaacgagtttgctgaaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115902 95 +  4147112 ACTGCATGGTCTAGGACTCTCATCCATGATTCCCATTCCAGTTCTCCAACTCGCCAGTCTACAGTACCATTGCGTTTCAATgagtttgctgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   260904 95 +   591668 ACCGCATGATCCAAGACTCTCATCCACGACTCCCATTCGATTTCGCCGACCCTCCATTCCATAGCTCCGTTCCTTTTGAGGGAATTTGCTTAAAA
i caeJap4.Scaffold17934 I 29 I 1609

a score=546.000000
s ce10.chrX              4857177 1 + 17718866 A
s cb4.chrX              10202340 1 + 21540570 a
i cb4.chrX              C 0 I 441
s caeRem4.Crem_Contig0   1748089 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 2
s caeJap4.Scaffold17934   262608 1 +   591668 A
i caeJap4.Scaffold17934 I 1609 C 0
e caePb3.Scfld02_0       3115997 0 +  4147112 C
e caeSp111.Scaffold409     78003 0 -   201088 C

a score=-4283.000000
s ce10.chrX              4857178 16 + 17718866 ---------GCATTATAGATGTATT
s caeRem4.Crem_Contig0   1748092 11 -  4500979 ---------aaaagat-----tagT
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold409     78003  9 -   201088 ---------acaccat-------tt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3115997 11 +  4147112 ---------atttaat-----tatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   262609 16 +   591668 AACTTCTTGataaaat---------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10202341 441 + 21540570 I

a score=68259.000000
s ce10.chrX              4857194 132 + 17718866 ---------TTAAA---TTTCAATATATATTGCAGAATC---------TTACTATTTCGAGAATTTCTGAACGCTCTTTGTATTGCTTTCTCTTCCGGAATGATGAGGTTGTCAAGTCCAGCCCTTGCGGCACGTACCTTACAAAAA-------------------TATTTT
s cb4.chrX              10202782 144 + 21540570 ----------------------TTGACTTTTACTGTATCTATCTAAACTTACTGTTTCTCGAATTCCGAAAAGCTCTCTGAATCGCTTTCTCATCCGGAATAATGAGATTGTCAAGTCCAGCCCGAGCAGCTCGCACCTCAATAAGACCCCGGTTAGAAATGTTTC------
i cb4.chrX              I 441 I 68
s caeRem4.Crem_Contig0   1748104 118 -  4500979 ----------------------AACACTTTTCCAGTGGC-------ACTtactatttttagaattacGGAAAGCTCTTTGAATAGCTCTCTCGTCCGGAATGATCAGATTGTCAAGTCCAGCCCTTGCAGCACGTACCTCAATAAGC-------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     78012 130 -   201088 ---------tcaaa---agttaatGA--ATCAAAGAAGC---------TTACTATTTCTCGAGTTTCGGAAAGCTCTTTGAATAGCTTTTTCATCGGGAATAATGAGATTGTCAAGTCCAGCTCTTGCGGCACGTACctcaaataaa-------------------taattt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3116008 132 +  4147112 ---------tcAAT---TATAAGTAGTTATGAAAGTGTC---------TCACTATTTCTTGAGTTCCGATATGCTCTTTGAATAGCCTTCTCATCAGGAATAATAAGATTGTCAAGTCCAGCTCTCGCAGCACGTACctcaaaataa-------------------taaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   262625 140 +   591668 tggcaattttcaaagtttatgagcagctgctgcaGTTTC---------TTACTATTTCTCGAGTTTCTGAATGCTCTTTGAATTGCCTTTTCGTCCGGAAGGATGAGATTGTCTAGTCCAGCTTTTGAAGCACGTATCTTGAAAAAG-------------------TT----
i caeJap4.Scaffold17934 C 0 C 0

a score=-14288.000000
s ce10.chrX              4857326 47 + 17718866 GT-TTTTGGAAA--------C-----------TTTGATTATGTATTTTGTATTTGATATGAAATAAT
s caeRem4.Crem_Contig0   1748222 51 -  4500979 Gtttgttaaaaatttatttcc-----------tcccactcaatttatttttct-----agcgATATG
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold409     78142 55 -   201088 ---cattaACAAGTTCTTTCCGCCCCCAcgattttcatat--tttcccCCCATCTATGAG-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3116140 53 +  4147112 ---agTTGACGAAATTTTTCC-----------TTTCACTCTGTTTCCCCTCTCTCATGAGCAATTTG
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   262765 43 +   591668 -------------AGTTTTGT-----------AATTATCCAAACAAACAAATTGAAtataaaataat
i caeJap4.Scaffold17934 C 0 I 11
e cb4.chrX              10202926 68 + 21540570 I

a score=246351.000000
s ce10.chrX              4857373 466 + 17718866  
s cb4.chrX              10202994 478 + 21540570  
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig0   1748284 483 -  4500979  
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold409     78197 466 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3116202 468 +  4147112  
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   262819 542 +   591668  
i caeJap4.Scaffold17934 I 11 C 0

a score=-3600.000000
s ce10.chrX              4857839 24 + 17718866 AAATTCAACAATTTTTTTGATTTT-
s cb4.chrX              10203472 18 + 21540570 aaattc------ttttttgagttt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     78663 18 -   201088 AAGTCT------CATTCTGAttat-
i caeSp111.Scaffold409  C 0 I 11
s caePb3.Scfld02_0       3116670  4 +  4147112 aaat---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   263361 13 +   591668 ------------Tactgttattatt
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1748767  0 -  4500979 C

a score=-7829.000000
s ce10.chrX              4857863 120 + 17718866 ATAGTTAAAGTCATGTGAAAGGTTAATGAAAATTTAAACCGTTCGAAGGTCGACGATGAACTTTTCTATATCTACTTTAAGTACTAAAACTACCGAT--TTACATGATAAACTTTTTCAAAT
s caePb3.Scfld02_0       3116674   7 +  4147112 ---------------------------------------------------gatgacg----------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   263374  27 +   591668 -----------------------------------------------------------------------------------------------attattattctttatattttttcaaat
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10203490   0 + 21540570 C
e caeSp111.Scaffold409     78681  11 -   201088 I
e caeRem4.Crem_Contig0   1748767   0 -  4500979 C

a score=0.000000
s ce10.chrX              4857983 13 + 17718866 TTTGGCAAAGTAC
e caePb3.Scfld02_0       3116681  0 +  4147112 C
e caeJap4.Scaffold17934   263401  0 +   591668 C
e cb4.chrX              10203490  0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748767  0 -  4500979 C

a score=-1207.000000
s ce10.chrX              4857996 16 + 17718866 CAAAACTTTGACTGGA----
s caeRem4.Crem_Contig0   1748767 14 -  4500979 CAA------GACTATCCCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3116681  7 +  4147112 ---------GAATGGA----
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold17934   263401  0 +   591668 C
e cb4.chrX              10203490  0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I

a score=0.000000
s ce10.chrX              4858012 9 + 17718866 AAAAAATCA
e caePb3.Scfld02_0       3116688 8 +  4147112 I
e caeJap4.Scaffold17934   263401 0 +   591668 C
e cb4.chrX              10203490 0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748781 0 -  4500979 C

a score=0.000000
s ce10.chrX              4858021 11 + 17718866 TCAAAAAATAA
e caePb3.Scfld02_0       3116688  8 +  4147112 I
e caeJap4.Scaffold17934   263401  0 +   591668 C
e cb4.chrX              10203490  0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748781  0 -  4500979 C

a score=-1393.000000
s ce10.chrX              4858032 82 + 17718866 TTTTAAAAAACGGTTGCCGATTTTGCTTCTAGTTTCTTTAACCTTCAGATTTTCAATTTTCTCTCGTTCACACTTAAATTTT
s caeRem4.Crem_Contig0   1748781 20 -  4500979 -TCTAATAAA-----------------------TCCTTTGACCT--------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3116688  8 +  4147112 I
e caeJap4.Scaffold17934   263401  0 +   591668 C
e cb4.chrX              10203490  0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I

a score=0.000000
s ce10.chrX              4858114 8 + 17718866 TCAGATTA
e caePb3.Scfld02_0       3116688 8 +  4147112 I
e caeJap4.Scaffold17934   263401 0 +   591668 C
e cb4.chrX              10203490 0 + 21540570 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748801 0 -  4500979 C

a score=-235.000000
s ce10.chrX              4858122 23 + 17718866 TGAAAATAACCACACAAGTGATT
s cb4.chrX              10203490 15 + 21540570 tgaaaacaa--------gtGAAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3116696  9 +  4147112 CGAGAAAAA--------------
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold17934   263401  0 +   591668 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748801  0 -  4500979 C

a score=-673.000000
s ce10.chrX              4858145 10 + 17718866 GTTTTTCTTC
s cb4.chrX              10203505  2 + 21540570 CT--------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   263401 10 +   591668 gttttttttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3116705  0 +  4147112 C
e caeSp111.Scaffold409     78681 11 -   201088 I
e caeRem4.Crem_Contig0   1748801  0 -  4500979 C

a score=262544.000000
s ce10.chrX              4858155 382 + 17718866 AAATTCAATATTTTTGCTAACCTGATAATCGTGATATCCAACTGGCCCAAGCACCATTGCTTCCTTACATAGAGGCAATAAACCACATTTCATACTAGCCACAGCCGCCACAATTGCCGTGTGCATATGAAGAATGCATCTGACCATTGGGTGAGCTTTGTAAATTGCAGAATGAAGAAGAAACGCAGGCT-------TAACTTGAT-----------------GAGTGCAAAAATAAGTCG-------------------------------------TTTTTGATTTTAAAGGTACCTGGTTGACTCCAGCTTTCAGTGTCCCGCAATCCAGAATTTTTCCATTTTCATCTATCTTCACGATGGTCGCAGCAGTGATTTCATGGTAGAGAAGACCAAATGGATTCATCAGAAAAGTGTTATCCTCATCGTTGGTTCGATAC
s cb4.chrX              10203507 361 + 21540570 ----------------CTAACCTGATAATCATGATATCCAACTGGTCCAATCACCATCGCCTCCTGACAAAGTGGCAACAGCCCGAACTTCATACTGGCCACAGCGGCAACAATTGCAGTATGCATATGAAGAATGCATCTGACCATTGGACGAGCTTTGTAAATTGATGAGTGAAGAAGAAATGCAGGCTGAATCTAGGACGTTAC-----------------CATctttagaatctgttt-------------------------------------ttATT------------ACCTGGTTCACACCAGCTTTCACCAATCCACAGTCCAGGATCTTCCCATCCTCATTGATTTTCACAATGGTTGCAGCGGTGATTTCATGGTAAAGAAGCCCATATGGATTCATCAAGAAGCTGTTTTCTTCGTCATTGGTACGATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1748801 360 -  4500979 -------------------ACGTGATAATCATGATATCCAACAGGCCCAATGACCATTGCTTCTTGACAAAGAGGCAGAAGACCACATTTCATGCTGGCAACGGCTGCAACAATAGCAGTGTGCATATGGAGAACACATCTAACCATTGGACGAGCTTTGTAGATAGCAGAATGAAGGAGAAATGCTGGCTGAAAC--ACACATTAT-----------------GATA-AAATAACCGGTTA-------------------------------------TAGTTGAATA-------ACCTGATTAACTCCAGCTTTCAATGCACCACAATCCagaattttcccattttcatcaattttcacaatggTTGCAGCAGTAATTTCATGGTAGAGGAGTCCATATGGATTCATCAGAAACGTGTTCTCTTCATCATTTGTACGGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     78692 364 -   201088 ------aa-------attcaccTGATAATCGTGGTATCCAACTGGTCCAATGACCATTGCCTCTTGACAGAGTGGCAAAAGACCAAATTTCATGCTAGCGACAGCAGCAACAATTGCTGTGTGCATGTGAAGAATACAACGAACCATGGGACGGGCTTTATAAATTGCAGAGTGAAGTAGAAATGCCGgc--------tgaaatcat---------------------tttattttcttttt-------------------------------------caaatgaatgttttcatACTTGATTAACACCGGCTTTGAGTGCTCCACAATCCAAAATCTTTCCATCCTCGTTTATTTTCACAATGGTCGCCGCAGTGATTTCATGGTATAATAAACCGTATGGATTCATCAAAAACGTATTATCTTCATCGTTTGTTCGGTAC
i caeSp111.Scaffold409  I 11 C 0
s caePb3.Scfld02_0       3116705 425 +  4147112 ---------------GCAAACCTGATAATCATGATACCCAACTGGACCGATAACCATAGCTTCTTGGCAAAGCGGAAGAAGCCCGAACTTCATACTGGCAACAGCAGCGACAATAGCAGTGTGCATGTGAAGAACGCATCTGACCATTGGACGAGCTTTGTAGATTGCAGAATGAAGGAGGAACGCTGGctaaaa---tgaaattattgaaaacgaCTGCTAGTGACATTTATAGTcgttttctatgattttctAGGCACTAATCAGATTGAATCGGGGCAAATAAGAATGATGTTACCTGATTGACTCCAGCTTTCAAAGCTCCACAATCCAGAATCTTGCCATTTTCGTCAATCTTCACAATTGTTGCTGCAGTTATTTCGTGGTACAAAAGCCCATAAGGATTCATTAAGAAGGTATTGTCCTCATCATTGGTCCGGTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   263411 362 +   591668 --------------aaatgacctGATATTCATGATATCCGACTGGTCCAATAACCATTGCTTCTTGACAAAGAGGAAGAAGACCACATTTCATGCTTGACACTGCAGCGACAATTGCAGTATGCATATGAAGAATGCATTTAACCATTGGACGAGCTTTATAGATGGCCGAGTGCAAAAGAAAAGCTGGCTAAAAATATAAACAAAT-----------------TTGTGGAAAAACGGGTTG-------------------------------------TCTT-------------ACCTGATTGACACCGGCTTTAATTGCACCGCAGTCCAGAATTTGTccattttcatcaattttcacTAGGTTTGCGGCACTTATTTCGTGGTAAAGTAGACCATACGGGTTCatcaaaaatgtgttttcctTGTCGTTGGTTCGATAC
i caeJap4.Scaffold17934 C 0 C 0

a score=300.000000
s ce10.chrX              4858537 19 + 17718866 TAAATCAATTTTGTTAAAA
s caeRem4.Crem_Contig0   1749161 11 -  4500979 TGAACA--------TAGAA
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold409     79056  5 -   201088 --------------TGAAA
i caeSp111.Scaffold409  C 0 I 29
s caePb3.Scfld02_0       3117130  5 +  4147112 --------------TAAAA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   263773 19 +   591668 TAAAGAATTGTTCtcaaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10203868  0 + 21540570 C

a score=319.000000
s ce10.chrX              4858556 2 + 17718866 TT
s caeRem4.Crem_Contig0   1749195 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 23 C 0
s caePb3.Scfld02_0       3117143 1 +  4147112 -T
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   263792 2 +   591668 gt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10203868 0 + 21540570 C
e caeSp111.Scaffold409     79061 29 -   201088 I

a score=-142.000000
s ce10.chrX              4858558 11 + 17718866 CTTCTAGAAAG
s caePb3.Scfld02_0       3117144  7 +  4147112 TTTCAAG----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   263794 11 +   591668 tttttgaaaag
i caeJap4.Scaffold17934 C 0 I 7
e cb4.chrX              10203868  0 + 21540570 C
e caeSp111.Scaffold409     79061 29 -   201088 I
e caeRem4.Crem_Contig0   1749197  0 -  4500979 C

a score=347.000000
s ce10.chrX              4858569 32 + 17718866 GTAAATATGGTGTTTTTACTTTTGTAGAAGTT
s caePb3.Scfld02_0       3117151 19 +  4147112 -------------TTATATTCTTCGAAAAGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   263805  7 +   591668 I
e cb4.chrX              10203868  0 + 21540570 C
e caeSp111.Scaffold409     79061 29 -   201088 I
e caeRem4.Crem_Contig0   1749197  0 -  4500979 C

a score=0.000000
s ce10.chrX              4858601 283 + 17718866 TCATAGaaatataattttaatacatttttttaaaCACGTCGTTAATGGACCTGCTAGTTAACTCACGTCGGAAAATAAAGTGGTGTGTAACCGGAACACAACACTGAACAAAAAAAATCCCAATTTAAAGCTGATTAATCCTTACATTTTGGCAGCTGTTTCAGAAGTTTCGTATTTTAATAAAGTTGAAATTCATACAATTTCTACACGCGTTGTATTTGCTATATTGTAAAATAAATTTGGTTGATTGCAAAATTTTACTTTAAACCACAGGTTCAAGTTT
e caePb3.Scfld02_0       3117170   0 +  4147112 C
e caeJap4.Scaffold17934   263805   7 +   591668 I
e cb4.chrX              10203868   0 + 21540570 C
e caeSp111.Scaffold409     79061  29 -   201088 I
e caeRem4.Crem_Contig0   1749197   0 -  4500979 C

a score=226.000000
s ce10.chrX              4858884 40 + 17718866 TAAATTTTTGTGGTAATTTTAAAAAGTCAATACTTCAAGC
s cb4.chrX              10203868 37 + 21540570 TACAATTCTTTGGTAATTT---AGCTTCtagattctctga
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3117170  0 +  4147112 C
e caeJap4.Scaffold17934   263805  7 +   591668 I
e caeSp111.Scaffold409     79061 29 -   201088 I
e caeRem4.Crem_Contig0   1749197  0 -  4500979 C

a score=546.000000
s ce10.chrX              4858924 1 + 17718866 A
s cb4.chrX              10203905 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1749197 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     79090 1 -   201088 a
i caeSp111.Scaffold409  I 29 C 0
e caePb3.Scfld02_0       3117170 0 +  4147112 C
e caeJap4.Scaffold17934   263805 7 +   591668 I

a score=429.000000
s ce10.chrX              4858925 3 + 17718866 CCC
s cb4.chrX              10203906 3 + 21540570 ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1749198 3 -  4500979 ACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     79091 3 -   201088 act
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3117170 3 +  4147112 ACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   263805 7 +   591668 I

a score=127405.000000
s ce10.chrX              4858928 152 + 17718866 TACCGAGATTTCGTTATGAATCCCTTGTGACCACTGGAACAGGTCAGCTAGTCGAAACAAGCATGCCAATTTGTTTCTCTGGATACGTTCCGCTTTTGAATACTTCTCGTTTCCACGAAGATCAGCAATTGCAATGGTGTTTCCACCTGAAA-
s cb4.chrX              10203909 152 + 21540570 tacCGAAATCTCATTATGAATCCCTTGTGACCACTGGAACAGATCTGCCAGACGGAACAAGCACGCAAGTTTGTTGCGTTGGATGCGCTCGACTTTTGAGTAAGTATCATTGCCTCGTAGGTCCGCAATAGCAATCGTGTTACCTCCTGAAA-
i cb4.chrX              C 0 I 392
s caeRem4.Crem_Contig0   1749201 152 -  4500979 CACCGAAATTTCATTGTGAATTCCTTGAGACCACTGAAATAAATCAGCTAAACGAAACAAGCATGCTAACTTGTTTCTTTGAATACGTTCTACTTTTGAATACGTGTCATTTCCACGAAGATCCGCAATGGCTATAGTATTCCCACCTGGAA-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold409     79094 152 -   201088 caccgaGATTTCATTATGAATTCCCTGAGACCATTGGAATAAGTCAGCAAGACGAAACAAACAAGCAAgtttatttctttgaataCGTTCGACCTTTGAGTAGGTTTCATTACCACGCAGATCAGCAATAGCTATAGCGCTACCACCTGcaa-
i caeSp111.Scaffold409  C 0 I 481
s caePb3.Scfld02_0       3117173 152 +  4147112 TACCGATATCTCATTATGAATTCCTTGGGACCATTGAAACAAATCAGCGAGGCGGAATAAACACGACAACTTATTCCGTTGCATCCGTTCCGTTTTCGAATAATTCTCGTTACCTTGAAGATCAGCAATGGCAATTGTGTTTACACctgtaa-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   263812 153 +   591668 TACTGTGATTTCATTGTGAATTCCTTGGGACCATTGAAACAAGTCAGCTAGTCGAAATAGACATGCTAGtttgtttctttgaattttctctatttttgaatatttttcatttccgcGGAGATCAGCAATCGCAATGTTGTTTCCCCCTTAAAA
i caeJap4.Scaffold17934 I 7 C 0

a score=-2239.000000
s ce10.chrX              4859080 12 + 17718866 -----CATAGATTACAT
s caeRem4.Crem_Contig0   1749356 12 -  4500979 -----gttaaatttcat
i caeRem4.Crem_Contig0  I 3 I 386
s caePb3.Scfld02_0       3117326  9 +  4147112 -----ctt---ttttat
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold17934   263965 12 +   591668 CAATGGTTAAaa-----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10204061 392 + 21540570 I
e caeSp111.Scaffold409     79246 481 -   201088 I

a score=851.000000
s ce10.chrX              4859092 5 + 17718866 GATTT
s caePb3.Scfld02_0       3117338 5 +  4147112 ggttt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   263977 5 +   591668 gtttt
i caeJap4.Scaffold17934 C 0 I 186
e cb4.chrX              10204061 392 + 21540570 I
e caeSp111.Scaffold409     79246 481 -   201088 I
e caeRem4.Crem_Contig0   1749368 386 -  4500979 I

a score=286.000000
s ce10.chrX              4859097 27 + 17718866 ATCGGAAATTGTCAACTTACAGAAGTT
s caePb3.Scfld02_0       3117343 24 +  4147112 ttcgt---ttgaaaaattccagaattt
i caePb3.Scfld02_0      C 0 I 293
e caeJap4.Scaffold17934   263982 186 +   591668 I
e cb4.chrX              10204061 392 + 21540570 I
e caeSp111.Scaffold409     79246 481 -   201088 I
e caeRem4.Crem_Contig0   1749368 386 -  4500979 I

a score=-417.000000
s ce10.chrX              4859124 40 + 17718866 CAAGTTTGTAAAAA---------TATTGCAATTTTGTTTATGCATGGGA
s caePb3.Scfld02_0       3117660 47 +  4147112 caattttttgataaatgatAGGGTGTGgttttgttgtttgtcccttt--
i caePb3.Scfld02_0      I 293 C 0
e caeJap4.Scaffold17934   263982 186 +   591668 I
e cb4.chrX              10204061 392 + 21540570 I
e caeSp111.Scaffold409     79246 481 -   201088 I
e caeRem4.Crem_Contig0   1749368 386 -  4500979 I

a score=182.000000
s ce10.chrX              4859164 2 + 17718866 AT
s caePb3.Scfld02_0       3117707 1 +  4147112 -t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   264168 2 +   591668 gt
i caeJap4.Scaffold17934 I 186 C 0
e cb4.chrX              10204061 392 + 21540570 I
e caeSp111.Scaffold409     79246 481 -   201088 I
e caeRem4.Crem_Contig0   1749368 386 -  4500979 I

a score=1181.000000
s ce10.chrX              4859166 8 + 17718866 CTTAGATT
s cb4.chrX              10204453 8 + 21540570 cctagatt
i cb4.chrX              I 392 C 0
s caePb3.Scfld02_0       3117708 8 +  4147112 ctcaactt
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   264170 8 +   591668 tttttatt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     79246 481 -   201088 I
e caeRem4.Crem_Contig0   1749368 386 -  4500979 I

a score=-10920.000000
s ce10.chrX              4859174 133 + 17718866 TTTGATATTATAATACTTTACTAGAAAAACAA------AAAAAGTATATCTACTTTTGTGTCACAAGGTTTCAGCATAGCT----AAAATTC-GTATAGGAAAGTTTTCTGCATTATAACATGTTGTAACTCCTCGTGTGAA--TA
s cb4.chrX              10204461 108 + 21540570 ttt----ttctttttggttccCATAAAAGAAAGGAAGTAAAAAATAGATCCATTCCCTAGGCGATG------CGCATAAAT------CATTTGGCACA--------TTCTATATGGGAACA----------CCCTGCGTGAT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1749754 108 -  4500979 tttaa-gttttttattcttcGGAAAAAAGATAGGAAGTAAAAAATAGATCGATTTCCAAGACGCT--------ACATAAAT------CATTC-GCCCA--------TTTTACATGGGAACA----------CCCTGTTTGAC----
i caeRem4.Crem_Contig0  I 386 C 0
s caePb3.Scfld02_0       3117725 107 +  4147112 ttt----ttatacttttctcaAAGAATATAAAGGAAGTAAAAAATAGAACGAATCCCAAGACACC--------ACATAAAT------CATTC-GAACA--------TTTTATATGGGAACA----------CCCAGCTTGACCA--
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   264178  74 +   591668 ----------------ttttctacagCATTTA----ACTCGAAATTCAATTATTTCACGGAATCtcgatttctgtgcaaatTGACTACTTTC-GT---------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     79246 481 -   201088 I

a score=245774.000000
s ce10.chrX              4859307 458 + 17718866 AGCATAAATCGAGTTTCTTTTGTCAAAATAAGGAAAAAAAACCAAGTTATCCGTTTTTCGAATACATTA-TTCCAAAATATAA--TAC---AAACCATATGTGTGAAGGTTGCCAAACGACATGTTTCCTTGTGGAACTGTGAGGTCCGAAAGTTTCTGGAGTACTTGCAAGTGATCCGGATCCGTACGTGCTGTATCACACTCCTAGATGTAAAATGTTTTGTACAAA-ATTACATTT-ATT----GAAACAAAAT--AACGAGAAAAAAGACAAATTACAAACCTGACGAATAACTTCTTCTAGCTCGTGGCAGAATGATTTTGATTCAAGTATCTGTTGCACTCTTTTCCGTCTCTCCATCTCTGACAAATCCTCCTA-AAATAGAG-CATTTCTCATC-CATCTTTTAAGCTGATTAAAGAGCGAGCACTCC--------------TTTCTCTTCTT-CTCTTGC------ATT---------TTCCATTCAATTTCCCAA
s cb4.chrX              10204569 394 + 21540570 --CGTAAATCAA---TCTTTTT------------------------------------------------CTCTAGTTTCAAAAGTAC---AAACCGTATGTGTGTAGATTGCCAAATGACATGTTTCCCTGAGGGACGGTAAGATCTGCTAGCTTCTGGAGCACTTGCAAATGGTCGGGATCGGTTTTAGCCGTGTCACACTCctag-------------------aa-aatgaattt-ctt----tAGAAAATCT--CCTAAAAAAGGAGGAG---CACCAACCTGGCGAATAACCTCCTCCAACTCGTGGCAGAATGATTTTGATTCGAGTATCTGTTGCACCCTTTTTCGTCTCTCCATCTCTGACAAATCCTCCTGAAAATTGCG-TAGCTCTCATCTCATCTTTTAAGCTGATT----AGAGAGCACTCG--------------tcgtatttttcttttcttc------tttccactTCCCTTCTATTCACTTTGACag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1749862 394 -  4500979 --CATAAATCAG---TCTTTCGCATTGAAAAG----------------------acttgaaa--------cttgaaaataaaaagtac---aaACCGTATGTGTGTAGATTTCCGAATGACATATTTCCCTGAGGAACGGTAAGGTCcgaaagtttttgaaggaCTTGCAAGTGATCGGGATCCGTTTTTGCTGTGTCACACTCCTAA-------------------AATGATGGTTTTAATA----Tagagaaact------gaaagagaATAA---AACAAACCTGTCGAATAACTTCCTCCAGCTCGTGGCAGAATGATTTTGATTCGAGTATCTGTTGCACTCTTTTCCGTCTCTCCATCTCTGACAAATCCTCCTG-AAATAAAG-CATCCCTCATC-CATCTTTTAAGCTGATT----AGAGAGCactcc--------------tcttttctttctctttt--------------------ttctattcactgTGACag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     79727 400 -   201088 ATCataaatcag---ttttttcttcgagatAG----------------------CTCACAAA--------CTCA-GAATAGAAAGTAC---AAACCGTATGTATGAAGATTTCCAAACGACATGTTCCCTTGGGGCACGGTAAGGTCCGAAAGTTTCTGAAGGACTTGCAGATGGTCAGGATCCGTTCTAGCAGTGTCACACTCcttt-------------------aa-attaatttt--tcttgagaaagaaatcagattTAGTAGAA----------TTAACCTGGCGAATAACTTCCTCCAGCTCGTGGCAGAATGATTTTGATTCGAGTATCTGTTGCACTCTTTTCCGTCTCTCCATCTCTGACAAATCCTCCTG-AAATAGAG-CATCTCTCATC-CATCTTTTAAGCTGATT----AGCGAGCACTcc--------------tctccattttcttttctct------ttt---------ttcttttcactttgacag
i caeSp111.Scaffold409  I 481 C 0
s caePb3.Scfld02_0       3117832 400 +  4147112 ----CAAATCAA---TCGTTT-TCGgagaaag----------------------tttcgaaacattttagctca-----aaaaagtac---aaaccGTATGTGTGGAGGTTCCCAAACGACATGTTCCCTTGGGGCACAGTAAGGTCCGCGAGCTTTTGAAGGACTTGCAAGTGGTCAGGGTCTGTTCTCGCTGTGTCACACTCCTTG-------------------AA-ATTaacgtt--tt----gaagaaaatt--attcacaaaaaagctG---TGCTAACCTGCCGAATAACCTCCTCCAACTCGTGGCAGAATGATTTTGATTCGAGTATCTGTTGTACTCTCTTCCGTCTCTCCATCTCTGACAGATCCTCCTG-AAATAGAGCCATCTCTCACC-CATCTTTTAAGCTGATT----AGAGAGCACTCC--------------tcttcctttta-tttcttt------tct---------ttctttttactttgacag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   264252 404 +   591668 --------CCAA---acttttgtgattaaaaa--------------------------------------aataaaaataaagaaaacaaaaaaccgtaAGAATGAAGATTGCCAAATAACATATTTCCTTGGGTAACAGTAAGATCGGAGAGCTTCTGAAGAGTGCGCAAGTGATCCGGATCAGAGCGAGCAGAATCGCACTCCTAATTGTAAAAT----------AA-GATAGATTA--TA---------GAATT--GTGTGGAAG------------CAAACCTGACGAATGACTTCTTCTAGCTCGTGGCAGAATGATTTCGATTCAAGTATCTGCTGCACTCTTTTCCGTCTCTCCATCTCTGACAAATCCTCCTG-AAACGAAG-CATCTCTGCTCACATCTTTTAAGCTGATT----AGAATGAAATAGAGAAAGTAAGAAAAGCttacttttt-cttctttatggagctt---------tttttttcatttttacaa
i caeJap4.Scaffold17934 C 0 I 548

a score=17641.000000
s ce10.chrX              4859765  97 + 17718866 GTCTTTTCAAAAAA----------TGACACT-GCG------------CTAATAATGGCAGGTTTCA-TTAATTGAAGTTCTTGGAAAAAGAGAAAAAAGAGAGCTGAGGAGG---GAAAACTTG-------------------
s cb4.chrX              10204963 110 + 21540570 ctcttttcaaaaaaaaaactacattgAAGCAAGCGAGAGAGCCTTTCTCAATAATGAAGTTCTCCATttaattggag----aaaaaaagaagaggagaaa-aggTC---------GAGAAATTG-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1750256 107 -  4500979 ctcttttcaaaaaa----------tgacactAGCAAGAGAGCCTTTTCCAATAATGAAGTTCTTCA-TTAATTGAAA----AGgggaataggaaaaaaaagaggtcaGAA--TTAGAGAAATAC-------------------
i caeRem4.Crem_Contig0  C 0 I 50
s caeSp111.Scaffold409     80127 127 -   201088 ctcttttcaaaaaaa---------tgacactAGCA--ATAGCCTTTTCGAATAATGAAGTTCTCCA-TTAATTGAAA----GAATGACGAAGAAGGGGAAAAGTATAGAATACTAGAAAAGAACTAGTGATGAAAGAGAGtgg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118232 118 +  4147112 ctcttttc--aaaaa---------tgacactAGCA--ATAGCCTTTTCCAATAATGAAGTTCTCCA-TTAATTGAAA----GAATAGGGGAAAAGGGAAAGGCCGTAG----CTAGAAGAGGATAA---ACTAAGAAGAGCGg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   264656 548 +   591668 I

a score=-6209.000000
s ce10.chrX              4859862 37 + 17718866 ATGTGCTCTAGTTT---TTTTTACGGAAAAACTTGGAGC-------A--
s cb4.chrX              10205073 37 + 21540570 --CTCTCAAAATTCAATCGtataaattgaaa-ttgga---------atg
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold409     80254 33 -   201088 ttcttttttattttctgtttttggaCTGAAA---------------AT-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118350 44 +  4147112 atgttttccctttt---ttttgagtcccaaa-TTGCAGTTCGGGTGAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   264656 548 +   591668 I
e caeRem4.Crem_Contig0   1750363 50 -  4500979 I

a score=713.000000
s ce10.chrX              4859899 2 + 17718866 GC
s cb4.chrX              10205113 2 + 21540570 TC
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1750413 2 -  4500979 TC
i caeRem4.Crem_Contig0  I 50 C 0
s caeSp111.Scaffold409     80287 2 -   201088 TC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118394 2 +  4147112 CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   264656 548 +   591668 I

a score=100313.000000
s ce10.chrX              4859901 110 + 17718866 ACTTACTTTGATTACTGCCGGTCTTTGCAAATCTTTGATATATTCAGGGTCATCTGGGTCTCGATAGTATGGACGTTCCCGTTCCTTCTCTTTTCTTCCAATCATCTGAA
s cb4.chrX              10205115 110 + 21540570 ACTTACTTTGATTACCGCTGGCCGTTGAAGCTCCTTGATGTATTCTGGATCGTCCGGATCTCGAAGATAGGGACGCTCCctttctttgcttttttggCCATACATCTGTa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1750415 110 -  4500979 ACTCACTTTGATTACTGCCGGTCTTTGCAGATCCTTGATATATTCGGGGTCATCTGGGTCCCGAAGATAGGGACGCTCTCGTTCCTTACTTTTCTGCCCATAcatctgga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     80289 110 -   201088 ACTTACTTTGATTACTGCCGGTCGTTGCAGTTCTTTTATATATTCTGGATCATCGGGGTCCCGTAGATAGGGACGCTCTCGGTCCTTACTTTTCTGTCCAtacatctgaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118396 110 +  4147112 ACTTACTTTGATTACTGCCGGTCGTTGTAGCTCTTTGATATATTCAGGATCATCAGGGTCGCGTAGATAGGGACGCTCCCGTTCTCTGCTTTTTTGCCCATACATCTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   265204 110 +   591668 ACTTACTTTGATAACTGCAGGCCTCTGAAGATCTTTGATGTATTCCGGGTCATCCGGATCACGGAGATACGGTCGTTCTCTCTCCTTATCGTGTCGCTCATTCATCTAAA
i caeJap4.Scaffold17934 I 548 I 198

a score=-24940.000000
s ce10.chrX              4860011 85 + 17718866 ACTTTATTGAAGTTTAAGAAAA-------TTGAAAATGAGATTGAAA--TATTGAAATTCAAG--------AAAAAATCACAAAGTTTAGAAAAGTAAA--CAT
s cb4.chrX              10205225 84 + 21540570 aact--------ttcaagaaaa-------ttg--agtgaaaTTACGAGCtgaatgttttcaatttctgaataagatatca-aaacctgcaaataataaa--aat
i cb4.chrX              C 0 I 1401
s caeRem4.Crem_Contig0   1750525 76 -  4500979 ---------------aagaaaaacactttttt--agtAACACT------TGAAGAGATTTgagtattcagaaaattgtc---aatttaaaaaaaagtag--cat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     80399 40 -   201088 a--------------ttgaatc---------------------------taTA-AGTTTCGAT--------ATGATAT-----------AAAggataaatt---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118506 47 +  4147112 -----------------GAACA---------------------------TA-----TTTCGGTTTTTGCGGATGACATT---TTTGGGGAAAAGATGAG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265314 198 +   591668 I

a score=-38703.000000
s ce10.chrX              4860096 306 + 17718866 TACTTTGCAAATATGAAAATGGGATGTAGTGTACAAATATGaatttaaaaataaaaataataaaattattCTAAATGTGCGATGATTTTCTGAATTATGtttaaattcccgcgcaaatggatggcctacttttgatattgtcttgttttcctgtttcattattggtctttTAACGTTAAATTTCTGTTTGTCAAATTTTTAGACATTTTTTCAAGATGAAAAACTGTTATAAAGGTGTTAACAGTTGAACTTACTAAAGATTGAAATATCAAATTAAGTAAAAA--AGGGTTCACAAGTTAT-----CGGAAA---------------------------------
s caeRem4.Crem_Contig0   1750601 125 -  4500979 ---------aatatg-------------------aaatatgaaatagCAA------------GAATGCTTTT--------------------------------------------------------------------------------------------------------ACGGGACCcg-tcaaaaaggaaaaatatacaacttgaagaaataaa----------------------------------aaagctggggtaagtaaagatcaaaaaaggcgagtctagaac---------cagaaa---------------------------------
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold409     80439 169 -   201088 -----caaaaaaaaagaagaa-----------acaaatat--ttttttaattgaag------aactattttt-----------------tttagctaTTTCGATGtcataaattaattt----tcattctatt----ttg------------------------------------acagtttc-----------ttgttatttcctattttaaaaaatcgg----------------------------------gAAATCAGAGAAACCATAGAACT-------AGAGTCCAGAAT---------Cacaaaat-------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118553 292 +  4147112 ------GAAGATATGGTTGAG-----------ATAACTTTGATATCACAGTTGTgg-----aaactattttcaaaagtgcatTGATTCACTTAATTCACTTGATGTTTCGAATTCACTTGatgtcataatttt----ttgtgtgggTTCACAGGTCAAAATATGATAT-------CTCAATTTCCA-TAATCAAATTTCTAATTGCGACTTAATCATATCGGATTGGT-------------------AATTTTGTTAGGATCGAAACATTCCTAGGGCTTTCAA-GACAAGTCAGAATTGAACTAAAcgaaaaattcctttttctaactttgaaaatgatcaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265314 198 +   591668 I
e cb4.chrX              10205309 1401 + 21540570 I

a score=-2901.000000
s ce10.chrX              4860402 43 + 17718866 CTGTATTTAC--------------AAATAAGGATTTTTTAAGATATGCTAAATCGGA
s caeSp111.Scaffold409     80608 17 -   201088 ------------------------cggaaaaaaacttatGA----------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118845 54 +  4147112 ttttatttctttcgCTAAGTAACGTggaaaaaatctcagaaaata---taaaaggaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265314 198 +   591668 I
e cb4.chrX              10205309 1401 + 21540570 I
e caeRem4.Crem_Contig0   1750726 40 -  4500979 I

a score=11979.000000
s ce10.chrX              4860445 128 + 17718866 ---------------------------------------------------TGTATACAATTTCATGAAAATAATTTGACATTTCTACTAGCACACAGCTTACACAAAGCTGTACTAAAAAGCATGAA----TTGATCGAAAAATAGTTCATTCAGCGTGAGACTATTCGATGGCGAGCCATC
s caeRem4.Crem_Contig0   1750766  91 -  4500979 ---------------------------------------------------TTTGCACAAGTTC-------TAACTTGA-------------AAACGATTGACA------------AAAAACGGGGAA----TTGACAAGAAAGGAGTTCGTTCAGTGTGGGACCATTAGATTC-----TTTC
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold409     80625 110 -   201088 -----------------------------------TAGCAGAGACACCATGTTTGCACAAGTTC-------TAACTAGA-------------AAACGATTGACA------------AAGAATCATGAAAAA-GGCAAGAACGAAAAGTTCGTTCAGTGTGGGACCGTCCGATGG-----CATC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3118899 151 +  4147112 aggctagaaccagaaaagcaggaaaaaaacgatgatAGTGGTGACATAATGTTTGCACAAGTTC-------TAACTTGA-------------AAACGATTGACA------------AAGAATCATGAAAGACAGGACAGTTGAAGACTTTGTTCAGTGTGGGACCGTTTGATGGTCAGCCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265314 198 +   591668 I
e cb4.chrX              10205309 1401 + 21540570 I

a score=-252.000000
s ce10.chrX              4860573  83 + 17718866 T------GATTTGTATACA---------------AAATTTGGTTATTGCATACCTCCT------GCGTTATA---TAACA-------------------------TTTGCTCTAC-GGGTGGCACACTT-GCCATGAGAA
s caeRem4.Crem_Contig0   1750857 113 -  4500979 CCCAACACATTCGTATACC--------TGCAGAGATAC---ATTTCTGTATAGATATGT-----TTATTATA---Taacg------aagaagaaagaag-tggATTGCTCTCCAG-GAGGGCTCCACTTCACCATGAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     80735 122 -   201088 TCGAAT-CGTTTGTATACA----------AAGTGAAAT---GTTATTATACACCTGTGCAT--AATAATATAATGTAACAGACACCGATTGGAAAGAGA-TATGACTTGCTCAAC-GGGAAATGCACTTCACTATGAGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3119050 120 +  4147112 TCGAAT-GAATTGTATATA-----TCTAGCATCGAAAT---GTTATTATATACCTATCTAT--ATTGTTATA---TAACA------AATTGGAGAGAAAGGAGGTCTCACTCAACGGGGGAATGCACTTCACCATGAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   265512 102 +   591668 ------TAATTTGTATACAAAATTGACCAGATCTAAAT----TTATTGTAGGTATGTATATCGAGCGTTATA---TAACA------AA-----------------TGTGCTCACC-GGGAAGCACTCAT-TTCATACAAA
i caeJap4.Scaffold17934 I 198 I 40
e cb4.chrX              10205309 1401 + 21540570 I

a score=-942.000000
s ce10.chrX              4860656 65 + 17718866 AGTGTATACATCTAATTACCTATGAAGCATGGCAAACGGTAATATTGAAAAATATTAATTGGAAA
s caeRem4.Crem_Contig0   1750970 43 -  4500979 ATATTATGAAATTAATTACTTT--------------TGTTTATGAAGGTGAATATTC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     80857 44 -   201088 ATAATATAAATCTAATTACAGGC-------------TGTGAGGGGGTGTGAATACTA--------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3119170 55 +  4147112 ATAAtataaattcaattattgTTG-CTTATGTT-TATGTGAATGAGGGGAAATACTA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265614 40 +   591668 I
e cb4.chrX              10205309 1401 + 21540570 I

a score=598.000000
s ce10.chrX              4860721 44 + 17718866 TGTGAATTTGACCCTAAAA---------TGTTT------GTGGTTTTTGCGTCAGTCAA
s caeRem4.Crem_Contig0   1751013 42 -  4500979 ----AACTTGACCCCTAAA---------CATTTCG----GCGATTTTCGAGCGAGTCGG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold409     80901 55 -   201088 ----AGAGTGACCCCAAAAACAATAAGTGGTTTTCTAGGAAGGTTTTTGCGCGAGTCGG
i caeSp111.Scaffold409  C 0 I 21
s caePb3.Scfld02_0       3119225 40 +  4147112 ----AGAATGACCCCAAAACTATTGa--ggttttt----gaggttttcgc---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   265654 44 +   591668 CGAGAATTTGGCCTAGAAA---------AATTA------GTATTGGtagcgaaaaacaa
i caeJap4.Scaffold17934 I 40 C 0
e cb4.chrX              10205309 1401 + 21540570 I

a score=-1515.000000
s ce10.chrX              4860765 7 + 17718866 ATTCTCC
s caeRem4.Crem_Contig0   1751061 6 -  4500979 -actttc
i caeRem4.Crem_Contig0  I 6 I 1
s caePb3.Scfld02_0       3119265 7 +  4147112 GGTTTCC
i caePb3.Scfld02_0      C 0 I 28
s caeJap4.Scaffold17934   265698 4 +   591668 aaca---
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10205309 1401 + 21540570 I
e caeSp111.Scaffold409     80956 21 -   201088 I

a score=-2034.000000
s ce10.chrX              4860772 18 + 17718866 AACACACTACTTTTGTCT
s caeRem4.Crem_Contig0   1751068 10 -  4500979 aaaaga--------gaaa
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold17934   265702 13 +   591668 agaaaactaaact-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3119272 28 +  4147112 I
e cb4.chrX              10205309 1401 + 21540570 I
e caeSp111.Scaffold409     80956 21 -   201088 I

a score=67.000000
s ce10.chrX              4860790 1 + 17718866 G
s caeRem4.Crem_Contig0   1751078 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409     80977 1 -   201088 a
i caeSp111.Scaffold409  I 21 I 1
s caeJap4.Scaffold17934   265715 1 +   591668 g
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3119272 28 +  4147112 I
e cb4.chrX              10205309 1401 + 21540570 I

a score=-31.000000
s ce10.chrX              4860791 1 + 17718866 C
s caeJap4.Scaffold17934   265716 1 +   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3119272 28 +  4147112 I
e cb4.chrX              10205309 1401 + 21540570 I
e caeSp111.Scaffold409     80978 1 -   201088 I
e caeRem4.Crem_Contig0   1751079 1 -  4500979 I

a score=89522.000000
s ce10.chrX              4860792  95 + 17718866 ---------GATG--GAAGCGATAAACGGCAAACAAGAATGAGAACCTTAAGGTATCCGCCTGTTGCGATAAAGTTCTTCTTA---------TGTCAAATCTAATTTAAGGAAT----------G
s cb4.chrX              10206710 114 + 21540570 ---------GATG--GAACCGATAAACGGCAAACAAGATTGAGAACCTGAAGGTATCCGCCTGTTGCGATAAAGTTCTTCGTCATCTCTATTTGTCAAATCTAATTTGAGGAATGAGTGGAAACG
i cb4.chrX              I 1401 C 0
s caeRem4.Crem_Contig0   1751080  95 -  4500979 ---------gatg--gaaCCGATAAACGGCAAACAAGATTGAGAACCTGAAGGTATCCGCCTGTTGCGATAAAGTTCTTCTTC---------TGTCAAATCTAATTTAAGGaat----------g
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     80979  95 -   201088 ---------gatg--gaacCGATAAACGGCAAACAAGATTGAGAACCTGAAGGTATCCGTCTGTTGCGATaaagttcttcttc---------tgtcaAATCTAATTTAAGGAAT----------G
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3119300  95 +  4147112 ---------gatg--gaacCGATAAACGGCAAACAAGATTGAGAACCTGAAGGTATCCGCCTGTTGCGATAAAGTTCTTCTTC---------TGTCAAATCTAATTTAAGGAAT----------G
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold17934   265717  85 +   591668 gaaaaaaGAGATGGTGAGCCGATAAGCAACAAACAAGATG------CGCAAGGTG---------------GAAGTTCTTCTTT---------TGCCAAATCCAATTTTGCGAAT----------G
i caeJap4.Scaffold17934 C 0 I 176

a score=4960.000000
s ce10.chrX              4860887 376 + 17718866 AGGGAAGAAAA-------GGAAGACCGAAAAGAAA----CTCAAGTCTACATGTACTCTA-TTTTGGAGAAAGATAGAAAGAGGCGCC-GAGCA--GAAAACCCAA------------GACATTTTATTCAGGATGGTTAATCACAATGAAAAGAAAATGG---AATAAATAGAATGCACTTGTCCGAGTGGTGCACAAGTAGGGTGGCTCAAATGAAAAAGAACGGTGAAGCAAAATGGAAGTGGAAATTTTCGAATTGAGCTAGGCCAATTAGTTTTGTGAGA--------TTTCATTACTTTTTGGGAAAGTAACCATTTTTCCGCAAACAGAGTTTTATAACTCAAAATAAATTTGTCAAAATTTAAAAATCGGTTTGAACTTTTCAGATTAATTATTCCGATAAGATAA------------------------------
s cb4.chrX              10206824 216 + 21540570 AAGGAcgaacaaaaaaggagaagaaggagaagaaa----ctCAAGTTTACTTGTACTCTC-TGTTGAGG--AGTTTG-----TGCTCT-GGGCAAAGAAATAGGGAAGGAAAGGAAAGACCTTGTTATTCAGGATGGTTaatcaaaatgaaaagaag--gGACCAGT----------------------------------------------------------------GAAAAGAAGAATTGCACTTTTCCA--------------------------GGAA--------TTTC---------------------------------------------------------ggt---tcaaattttgg---------------tt----------tatttggttcagaaaa------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1751175 180 -  4500979 aaggaagaa---------aagagaaaaagaagaaa----ctcaaGTTTACATGTACTCAC-TTTTGTGG--GGCTC------TGCTCt-tagaaaagaaataaggA------------GTCTTGTTATTCAGGATGGataatcaaaatgaaaagaca--GG---AAT----------------------------------------------------------------GCAAAGGGAAATTGCACTTTTCAAG----------------------TGTGGAG--------GTCC---------------------------------------------------------CG------AGAATTTGA-------------------------------------ACATGC------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     81074 221 -   201088 aggggagaaaa-------aggagaagaaaaagaagaaacctCAAGTTTACATGTACTCTC-TTTTG----------------GGTCCT-GAGCAATGAAAAGCGAA------------GACATGTTATTCAGGATGGttaatcaaaatgaaaggaGA--GG---AATGG--------------------------------------------------------------GCAAAACAGAATTGCAccttttgaa----------------------tgaaaag-----gtAGTTC-----------------------------------------------------AATGGg------atattctca---------------tttc---ttgCTGATCTTAACCATAATA-CAAGCGACACGGTAA--------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3119395 258 +  4147112 Aggggagaaaa-------aggagaaaaagaagaaa----ctcaaGTCTACATGTACTCTCTTTTTG----------------GGTTCTAGAGCAAAGAAAGACGGA------------TGCTTGTTATTCAGGATGGttaatcaaaatgaaaagaga--gg---aatGG-------------------------------------------------------------AGGAGAATAAAATTGCACTTTTTAAG----------------------GAAGAAACCTATGTggttcttttc--------aaaagaactAGGT---------CAGATTT---------GAAATGGa------gtattctca---------------------------aaaaactatcaaaatgtcaagaaacgaggaaaaaagTTCGGAGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265802 176 +   591668 I

a score=-19046.000000
s ce10.chrX              4861263 161 + 17718866 TATTGCAGCACTACTACGAAATGCTGAAACAATATTTCTATTTAAAAATTCTAAGCTTTTTCAAT---AATTTGCGGTCAATGCAATTATTTA-----TAATACC----------ACTTACTGTAAAATTCTTAGTCTGAAATTTGAAATGCTTTAACTTTCAGAAACTTGAAATACTC
s cb4.chrX              10207040  72 + 21540570 -----------tattttgaaattagcaCGT------------------------------AGAAC---AATTT--taagattcaaatttttcaaaaggtgACACT----------ACCAGTGGTAAGA---------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1751355  75 -  4500979 -----------TAATTTGAAACATGCCCAT------------------------------TCAAACTGAATCG--TTTCATTTGCATCAGTTATTTGATGTTACA----------CCTAAACCTAACA---------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3119653 127 +  4147112 ------AGCAATCATCtgagaatggaaaata------------------tttggacttcatcaaa---acttt--ggTTGCTAAAACTATTCA-----TGACACTGTTTCGTTTCTCCAAACTGAATAATT-----------ATTGACATG-------TTGCGAAAACCCGAAAACCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265802 176 +   591668 I
e caeSp111.Scaffold409     81295   0 -   201088 C

a score=-8611.000000
s ce10.chrX              4861424 98 + 17718866 TTCCAAAAAAACCCCAAACTGGTGTTTAACCAATGCGGCAACAATAGAAGAAACATGCCGAA---TTGCGATTAAATCT------TATATCAAACACACACGCACAC
s cb4.chrX              10207112 36 + 21540570 ------------------------------------------------------------AAACCTCGCGATAAGATCTAAACAAGGTATGAA----ACA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1751430 37 -  4500979 ------------------------------------------------------------GAA--TTCCGATAACATCT-AACATAATATGAAACACACA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     81295 91 -   201088 TTCCATCGAAACCTCTACTTGTTGTTTAGTA---GCAATATTAAAACACGAACAATGTCATACGGTTTCGATAAAATCT------AACATGAAACACCCA-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3119780 59 +  4147112 -------------------------TTCGTA-----AACACTAAAACACAA-----GACGGAGGTAACCGATAAGATCT------AATATGAAACACACA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   265802 176 +   591668 I

a score=28425.000000
s ce10.chrX              4861522 403 + 17718866  
s cb4.chrX              10207148 325 + 21540570  
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   1751467 412 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     81386 384 -   201088  
i caeSp111.Scaffold409  C 0 I 12
s caePb3.Scfld02_0       3119839 382 +  4147112  
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold17934   265978 515 +   591668  
i caeJap4.Scaffold17934 I 176 C 0

a score=-14585.000000
s ce10.chrX              4861925 45 + 17718866 AAGCTCAACAACAGTGATATGATTTTTGAATTCAGTTTTGCGTGG-----------------------
s caeRem4.Crem_Contig0   1751879 24 -  4500979 --atctgaaaa----------------aaagttgatactGAG--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     81782 22 -   201088 ----CGAACGA----------------GAATATTATTTTGTG--------------------------
i caeSp111.Scaffold409  I 12 C 0
s caePb3.Scfld02_0       3120233 10 +  4147112 ----TGGATGA----------------GCA--------------------------------------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17934   266493 35 +   591668 ------------------------------TATAATTTTGTA---TACTTCCTAGCTATTTTTGTATG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10207473 29 + 21540570 I

a score=144764.000000
s ce10.chrX              4861970 482 + 17718866  
s cb4.chrX              10207502 525 + 21540570  
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   1751903 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     81804 497 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3120243 509 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   266528 495 +   591668  
i caeJap4.Scaffold17934 C 0 I 222

a score=1781.000000
s ce10.chrX              4862452 10 + 17718866 TGGCGAAACA
s cb4.chrX              10208027 10 + 21540570 TGCAAGAACA
i cb4.chrX              C 0 I 656
s caeRem4.Crem_Contig0   1752390 10 -  4500979 TGAAGAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     82301  8 -   201088 CGTTGGAA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3120752 10 +  4147112 TGAGGAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   267023 222 +   591668 I

a score=1692.000000
s ce10.chrX              4862462 5 + 17718866 TGGAT
s caeRem4.Crem_Contig0   1752400 5 -  4500979 TGGAT
i caeRem4.Crem_Contig0  C 0 I 394
s caeSp111.Scaffold409     82309 3 -   201088 --AAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3120762 5 +  4147112 TGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   267023 222 +   591668 I
e cb4.chrX              10208037 656 + 21540570 I

a score=863.000000
s ce10.chrX              4862467 11 + 17718866 C----CGGCAACAAA
s caeSp111.Scaffold409     82312 15 -   201088 CGAAACGACACAAAA
i caeSp111.Scaffold409  C 0 I 191
s caePb3.Scfld02_0       3120767 15 +  4147112 TAAAACGGCAGAAAA
i caePb3.Scfld02_0      C 0 I 464
e caeJap4.Scaffold17934   267023 222 +   591668 I
e cb4.chrX              10208037 656 + 21540570 I
e caeRem4.Crem_Contig0   1752405 394 -  4500979 I

a score=0.000000
s ce10.chrX              4862478 989 + 17718866  
e caePb3.Scfld02_0       3120782 464 +  4147112 I
e caeJap4.Scaffold17934   267023 222 +   591668 I
e cb4.chrX              10208037 656 + 21540570 I
e caeSp111.Scaffold409     82327 191 -   201088 I
e caeRem4.Crem_Contig0   1752405 394 -  4500979 I

a score=298.000000
s ce10.chrX              4863467 15 + 17718866 GAATGGTAAGAC------GCC
s caeSp111.Scaffold409     82518 21 -   201088 GAATGGTTAAACTGATGTGAC
i caeSp111.Scaffold409  I 191 C 0
e caePb3.Scfld02_0       3120782 464 +  4147112 I
e caeJap4.Scaffold17934   267023 222 +   591668 I
e cb4.chrX              10208037 656 + 21540570 I
e caeRem4.Crem_Contig0   1752405 394 -  4500979 I

a score=-742.000000
s ce10.chrX              4863482 38 + 17718866 AATTATTGAGTTATTTAAC-AGAAGTAAGT-AACGATTAG
s caeSp111.Scaffold409     82539 30 -   201088 ---------AATAATTGACTAGAAAGATAT-TATACTAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3121246 39 +  4147112 AACTGATGAGATAATTATCCAGTAAAAAGTATATACTAG-
i caePb3.Scfld02_0      I 464 C 0
e caeJap4.Scaffold17934   267023 222 +   591668 I
e cb4.chrX              10208037 656 + 21540570 I
e caeRem4.Crem_Contig0   1752405 394 -  4500979 I

a score=-108.000000
s ce10.chrX              4863520 2 + 17718866 TG
s cb4.chrX              10208693 2 + 21540570 TA
i cb4.chrX              I 656 I 1
s caeSp111.Scaffold409     82569 2 -   201088 GA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3121285 0 +  4147112 C
e caeJap4.Scaffold17934   267023 222 +   591668 I
e caeRem4.Crem_Contig0   1752405 394 -  4500979 I

a score=65142.000000
s ce10.chrX              4863522 167 + 17718866 -----TACTTTTCTAATG-----AAACAAAAA-----CTATAAGATAG----ATAGAAATAAAAGAAGCAA----CACCACAACCACACTTTCAGTTAGATGCCATGAGATCGTTTTGAAAGTAGATAATTGCGTTTAGAAATATGATCCTGTTGG----------------------CTAAAGCCAATAAGC-ATGGAGGGGTGCGAGGAGG
s cb4.chrX              10208696 167 + 21540570 -----ACTTCTTCTGATG-----AA-AGAAGACGTATCGAAAAGATAG----TGAGTAACAAAAGAAGCCA-------------------------TGGATGCCATGAGATCGTTTCTAAAGTAGATAATTGCTTTCAGAAATATGATCCTGTCGGTGGTGTGGCATTGGGGTGGGGACTAAAGCCAATAAGCGGCGGAGAG------TGAGA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1752799 158 -  4500979 -----TGTTCTTTCATTG-----AATCGAAAA-----CCACAAGATAg----caagaaacaaaagaagccACTATCGCCAC-------TTTTCCGTTGGATGCCATGAGATCGTTTCTAAAGTAGATAATTGCTTTCAGAAATATGATCCTGTTGG----------------------CTAAAGCCAATAAGC-GCGGAGAG------TGAGA
i caeRem4.Crem_Contig0  I 394 C 0
s caeSp111.Scaffold409     82571 173 -   201088 CACTCTCTTCATGCAATTCgaaaaccacaaaa-----ccacacgaaagaaaaaaagaaacaaaagaagctA----CCGCAC--------TTTCTGTTAGATGCCATGAGATCGTTTCTAAAGTAGATAATTGCATTCAGAAATATGATCCTGTTGG----------------AAGAGACTAAAGCCAATAAGC-ATGGAGGG------TGAGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3121285 155 +  4147112 -------TTCATTTGGTG-GTGTATCGCAAAA-----CCACATGATat----caagaaacaaaagaagccA----CCGCAC-------TTTTCTGTTAG-----ATGAGATCGTTTCTAAAGTAGATAATTGCATTTAGAAATATGATCCTGTTTG------------------GAAGCTAAAGCCAATAAGC-ACGGAGAG------TGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   267023 222 +   591668 I

a score=97298.000000
s ce10.chrX              4863689 260 + 17718866 GGACCAGAAAAATAT----------------TCCTTCTATCTTTTTTT-------------GCTTGCAGAAAATTTTGAAGAACAAG-GGCCAAATCTT-T----AAAGCAGGGGGAAGAGTGG-AGAGGATGGGAGGGCA--------ACGAGACAAAAAT--TCATGC--ACA-ACGA--GCGAGAAAAGTCCCTTACGCGTGAAAAAAATGTGGAGCAACAAGGTCTTAC-CG-AAAAAAGGCAC-----TCCGAAAAAAACGGCA-TTTC------AGCTGAC-------------GGGTGAAGATAGAAT--ACGCAACAATCT--ATCAAGTTGTT
s cb4.chrX              10208863 299 + 21540570 GGACCAAAAAATTCTTACGCGATGCCGAGGCTTcatctatcttttttcttc----ttctttccttgtagaatattttgaagaacAA--AGCCAAATCTTCG----AGAgcacaaaaaaggaaga-aggg-----AGGAGCGCGGACGGACGGAGAC--AAAT--ACATGCAAAAA-TCGA--GCGA-AGGACCTTCGTAGAAGCACAAAAAACTCGAAAGAA----GGTTGACATA-GGAGAAAACGG-----CG---------GTGAATTTTTCCTAGAAGTTGACACAAGGAGAAATGGAATGAAGATAGAATTCCCGCAACATTCTGcataaagttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1752957 260 -  4500979 GGaccaaaaaattctt--------------cttcatctatctttttttttcgtcgttttcttcttgtagaatattttgaagaacAA--AGCCAAATCTT-G----AGAgcacaaaaaaggaagagaagg-----agGAGCG--------AGAAGAC--AAAT--ACATGC--ACA-TCGA--GCAG-AAACACCCCGTactagcaaaaaaaaaacgaagcaA----GGTTAAC-CG-AAAAAATGCGA-----CT---------CCGCA-TTTTAGGACGAGTTGAC-------------GACTGAAGATAGAAT--ACGCAACAATCT--ATCAAGTTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     82744 255 -   201088 GGACC-AAAAATTCT---------------CTCcatctatcttttttt-------ctgtcttcttgtaggatattttgaagaacaa--aGCCAAATCTT-G----AGAGcacaaaaaaaggaag-agggg--GAAGGAGGA--------GCAAGAC--AAAT--ACATGC--ACATTCGG--AGGC-AAAGGACCCGTACGAgcacaaaaaaaacgaagcaA----GGTTAAC-CGCAAAAAAGGCGC-----TC---------CCGCA-TTTTAGGACGAGTTGAC-------------GGGTGAAGATAGAAT--ACGTAACAATCT--atcaagttttt
i caeSp111.Scaffold409  C 0 I 48
s caePb3.Scfld02_0       3121440 249 +  4147112 GGACC-AAAAATTCT---------------CTCcatctatcttttttt-------ctgtcttcttgtagaatattttgaagaacaa--aGCCAAATCTT-A----AGAGCaaaaaaaCGGGGAG-AAGG-----AGGAGCG--------GCGAGAC--AAAT--ACATGC--ACATTCGAGCaaaa-aaaGGACCCGTAGGAGCAC--AAAAAACGAAGCAA----GGTTAAC-CG---AAAAAGCGC-----TT---------CAGCG-TTTTAGGATGAGTTGAC-------------GGGTGAAGATAGAAT--GCGCAACAAtct--atcaagttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   267245 235 +   591668 GGACC-AAAGCTTTT---------------CCTTCTATATCTTTTTCC-------------------GGGA------GAGgaataaatatctaaatcgt-gaaataaaacattaaaaagtaaga-aa-------aagagta-------aaagagga--aaatcgacaagc--aag-------aaaa-aaacatttc---------aaaaagaattgaagaaa----ggttgac--a-aaaaaaaacgcatccttt---------tccca-ttttttcccgAGTTGTC--------GGGCAGAGTGAAGATAGAAT--GCACAACAATCG--ATCAAGTTTTC
i caeJap4.Scaffold17934 I 222 C 0

a score=-12141.000000
s ce10.chrX              4863949 60 + 17718866 CAGAAGAAGAAAAAAACGCTGATGCC-------CATTGGAAATGTGTTACGCGTTTACGCGTCTAAC
s cb4.chrX              10209162 44 + 21540570 ----------gaaataggTTCGCGCC--------AATGAAATTGGCTG--GCGAGAGCCCGTGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1753217 53 -  4500979 ----------GGAATGGGTTCACACCCTTACTCGGATAGAATTGAGTGA-GAGAGAGCCGGGGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3121689 30 +  4147112 ----------gaaataggcTCACGTA-------GTTTTATGTTGAAT--------------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   267480 31 +   591668 ---CAAAATTGAATGAGCTTCACACC-------CATTTCGG--------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     82999 48 -   201088 I

a score=85810.000000
s ce10.chrX              4864009 204 + 17718866 -----------AGTC-ATCAAAACACGATAAACTCG--AGATTGAGTGCTCAA-AACGGATTTGTTGGAAAA---ATTGGGAGAAAAGTGGGGAAAAGTAACGGTGACCCAGAT-GCGGCAGTTTGAAAGATGTAGCCTAATGGAATTAGAGCAATCTTCT---------AGTAGTACGGAATTGGTCGCTTTAAAGTACGCAGTTAGT-----------CTCTGCAGAACTAAAA-----GACAAAA
s cb4.chrX              10209206 191 + 21540570 ------------GTTGGTTAACAGACTATTA------------GTGGGTGGAT-Tgcaaag-aaatgaaaaacctATTTGTA--------GGAAAAAGTAACCGTGCCCCAGAT-GGGTCAGTGTG-GCGATGTGGTCTAATGGAATTAGAGCAATCTTGC---------AGTACTACTCAATTGGTCGTGTTAAAGTACGCAT------------CTCGGtcttttgagcaaaaatagaGAACGAAA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   1753270 204 -  4500979 ------------GTT-GTTAAAAGACGATTAACTCG--AAAATGGGTGTGCAT-TACGAAG--AATGAAAAACCTATTTGTA---------GAAAAAGTAACGGTGACCCAGAT-GGGGCAGTTTG-AAGAAGCGGTCTAATGGAATTAGAGCAATCTTGC---------AGTTGTACTGAATTGGTCGCGATAAAGTACGCATTGAGTCT-GTGCCCCGCTCTTTTGAGCAAAAA-----GATGAAG
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold409     83047 211 -   201088 -----------AGTT-GTTAAACGGCGATTAATTCAA-AATGGGGGTGTGAGTGTCcgtggaaaatgaaaaacctaTTTGCC---------GAAAAAGTAACGGTGACCCAGATGGGAGCAGTTTG-AGGATGCAGTCTAATGGAATTAGAGCAATCTTGT---------AGTAGTACTGAATTGGCCGCGTTAAAGTACGTATTCAGTCGTCTTTGTCACTCTTTTGggcaaaaa-----gagaaga
i caeSp111.Scaffold409  I 48 I 15
s caePb3.Scfld02_0       3121726 195 +  4147112 -----------AGTT-GTTAAAAGACCATT--------AAAGTGGGTGTGAGTGTCCGTAGCCGAATAAAAACCCATTTGTA--------GGAAAAAGTAACGGTGACCCAGAT-GGAGCAGTTTG-GAGATGTGGTCTAATGGAATTAGAGCAATCTTGT---------AGTAGTACTGAATTGGTCGCATTAAAGTACGTATTCAGCCG---------CTCTTTTgagcaaaaa-----gagaaga
i caePb3.Scfld02_0      I 7 I 12
s caeJap4.Scaffold17934   267511 201 +   591668 AAAACTCAAAATACC-GCTAAACGATGGTTAATGCAAGTAAATGAG--------TCTATAGTCGCGGAGAACCCGATTTAAA---------GTA-----AACGGTGACCCAGAT--GGGCAGTTTG--AAATGGAGTCTAATGGAATTAAACCAATTTTGTAAAAGTAGCAGTAGTACTGAATTGGCTCTACGAAAGTGCGCCA-GAGACA---------TTCTTTTAAGCGGAAG-----AA-----
i caeJap4.Scaffold17934 C 0 C 0

a score=-3161.000000
s ce10.chrX              4864213 25 + 17718866 ---AGAGGCACGAATCTCGGAGAA-GACA
s cb4.chrX              10209409 17 + 21540570 ---AGTGGTGATTA-----GAGCCG----
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold409     83273 21 -   201088 ---AGTGGTGATTATTTGGAAGAA-----
i caeSp111.Scaffold409  I 15 C 0
s caePb3.Scfld02_0       3121933 21 +  4147112 ---AGTGGTGATTATTTGGGAGCA-----
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17934   267712 24 +   591668 GCGGGCGGACAACGCTCGGTGAAT-----
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1753474 31 -  4500979 I

a score=122518.000000
s ce10.chrX              4864238 303 + 17718866 CAAGAAGGGCCCCTCCTCTTAAGACAA---------CACAATTTTTTTGGAACAAC------GGAACTTGTTG-CTGGCAATAATGATTGTAGAA-----------AATCTCTAATTTATGAGCA---TGTAACACATT-------GACG-------------TGCTCG--TAAAAGCAAC------------------------AA-GTATACCACCAA-AGCAGCAGATAATGCCAGTTGACTCCAGATGACAAATCGGTGTCGTGA-AGTCGCGGCAATCCCCCAGAGCAAATGCCGCATCTTTTCAAACACTTACCAATGTGCGCTCCAAATTTGATGAATTAGCTATTTG------------GCGTATATTCGAAACTGGAGAATGTTC
s cb4.chrX              10209426 348 + 21540570 CAAGAAGGGAC---CCTCTTATGTCAT---------TGCAATTGTTTTGGAACAAGG-----GGAACTTGTGGATTAA--GACAAAAAGAGAGAAGTGAAAAGAATAGTTCCTAATTTATTGGCG---TGCTTTGC-TTCTTACTACACAACTACTACACACGTGAAAA--TATGAGTGGTCCGAAGCATGGACAC---ACAACAAA-AACTGCCACC---AGTAGCAGATTATGCCAGTTGACTCCAGATGACAAATCGTCGTTTTGGACGT--CGGCAATCCCCTAGAGCAAGTGTCGCATCGTTTCAAACACTTAGACGTAT-CCACAAGTATTTGATGAATTAGGT---CAAAA-------Gcggataattttgaaacaggaaa-TGCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1753505 319 -  4500979 CAAGAAGGGAC---CCTCTTATGTAAT--------CCCCAATTGTTTTGGAACAA-G-----GGAACTTGTTG-CCAA--ATCTTAAGTAAgcgattgaaaa----attttctagtttatTGGCA---TGCTTTGC-TT-TCACTACACG--------------TAAAA--TATGAATGGC-----GCATGAACAACAGACAACAAA-A--CGCTACC---AGTAGCAGATTATGCCAGTTGACTCCAGATGACAAATCGACGTCGTGG-TGT--CGGCAATCCCCCAGAGCAAGTGTCGCATCTTTTCAAACACTTAGACGTGT-CCCCCCGAATTTGATGAATTAGGt---cg------------ggataattttgaaacagaaagttgtTC
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold409     83294 323 -   201088 CAAGAAGGGAC---CCTCTTAAGCCAT--------TCCTAATTGTTTTCGAACAACAGGCGCGGAACTTGTTG-ctgatgaaaataaagaatgaaG----------ATTCTCTAATTTATTGTGGAATTGTCGAGC-TT-------CACG-------------TGCAGA--TACAAGTAGC-----GTCAGCGCATTTGGCAACAAA-ACACGCTACC---AGTAGCAGATTATGCCAGTTGACTCCAGATGACAAATCGACGTCGGAG-AGT--CGGCAATCCCCCAGAGCAAATGTCGCATCTCTTCAAACACTTATACGTGTCCCTCCCGAATTTGATGAATTAGCTG--TG------------gtctaatttcaaaactgaagATCTTTC
i caeSp111.Scaffold409  C 0 I 549
s caePb3.Scfld02_0       3121954 308 +  4147112 CAAGAAGGGAC---CCTCTTATGCCAT------TCTCCCAATTGTTTTGGAACAACG-----GGAACTTGTTG-Ctgatgattttgaaggaaaaag----------atTTTCTAATTCATTGGCG---TGTCGCA-----------CACG-------------TAAAAA--TATAAGTGGC----------CGC-TTGGACAACAAA-ACACGCTACCAGTAGTAGCAGATTATGCCAGTTGACTCCAGATGACAAATCGACGTCGTGG-AGT--CGGCAATCCCCTAGAGCAAGTGTCGCACAGCTTCAAACACTTAGACGTG--CCATCCGAATTTGATGAATTAGCT---Cg------------gtctaattttgaaactgaagatCGTTC
i caePb3.Scfld02_0      C 0 I 795
s caeJap4.Scaffold17934   267736 295 +   591668 -----GGGGAC---CCTCTTgtgtcatcatcatcatcacaaATATTTTCGAACAA-------GGA----GTTG-CAGATGGC-----------GAG----------GCGTACGAATTGATGGAC----TGCA-----CT-------CACG-------------GAAAAATGTATAAGTGGT----AGTGGGCACAG-AAACAACAGACAAAAGCT------AGCAGAAGATTATGCCAGCCGGCTTCAAATGATAAATTGCCATTTTGG-AGT--CACCAATCCCCTAGAGCTAATGTCGCTCTTTCACAGACTCTTTGATAAGT-CTGC---AACTTGATGAATTAGAT---TGTCGCATTTGTGTCCATAAATTTGATACTTGC--------
i caeJap4.Scaffold17934 C 0 C 0

a score=-860.000000
s ce10.chrX              4864541 3 + 17718866 -ACT
s cb4.chrX              10209774 3 + 21540570 -GTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1753824 3 -  4500979 -GTT
i caeRem4.Crem_Contig0  C 0 I 539
s caeJap4.Scaffold17934   268031 3 +   591668 Cat-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3122262 795 +  4147112 I
e caeSp111.Scaffold409     83617 549 -   201088 I

a score=230.000000
s ce10.chrX              4864544 4 + 17718866 TTGC
s cb4.chrX              10209777 4 + 21540570 CGGC
i cb4.chrX              C 0 I 1840
s caeJap4.Scaffold17934   268034 4 +   591668 ttgt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3122262 795 +  4147112 I
e caeSp111.Scaffold409     83617 549 -   201088 I
e caeRem4.Crem_Contig0   1753827 539 -  4500979 I

a score=-8244.000000
s ce10.chrX              4864548 1196 + 17718866  
s caeJap4.Scaffold17934   268038 1180 +   591668  
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3122262  795 +  4147112 I
e cb4.chrX              10209781 1840 + 21540570 I
e caeSp111.Scaffold409     83617  549 -   201088 I
e caeRem4.Crem_Contig0   1753827  539 -  4500979 I

a score=1083.000000
s ce10.chrX              4865744 23 + 17718866 TTTTTTGAAATTATTTTTCAAAT
s caePb3.Scfld02_0       3123057 23 +  4147112 TTTTTCAGTAATATCTTTCTGAT
i caePb3.Scfld02_0      I 795 I 1
s caeJap4.Scaffold17934   269218 19 +   591668 ttttttg----tattcagAAAAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10209781 1840 + 21540570 I
e caeSp111.Scaffold409     83617 549 -   201088 I
e caeRem4.Crem_Contig0   1753827 539 -  4500979 I

a score=-2896.000000
s ce10.chrX              4865767 35 + 17718866 CAAATCTTAGTCACGTCACTTGAATT----GAT--AACTTC
s caeRem4.Crem_Contig0   1754366 34 -  4500979 CAAATATCAGTTTTATCACCCGCATC-----AT--AATTTA
i caeRem4.Crem_Contig0  I 539 I 10
s caePb3.Scfld02_0       3123081 23 +  4147112 TAGATGACA-------------CATC-----ATTCAATTTG
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold17934   269237 23 +   591668 CGAATA----------------CATCCACTAAC--AAGTCT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10209781 1840 + 21540570 I
e caeSp111.Scaffold409     83617 549 -   201088 I

a score=5743.000000
s ce10.chrX              4865802 28 + 17718866 TGTCAAACCCACGTCCTGACTTGTTTTG
s cb4.chrX              10211621 26 + 21540570 TATTAGACCCACATCTTGACTCGTTC--
i cb4.chrX              I 1840 I 14
s caeRem4.Crem_Contig0   1754410 24 -  4500979 TCTCAAACCCACATCCTGACTTGT----
i caeRem4.Crem_Contig0  I 10 I 9
s caePb3.Scfld02_0       3123112 28 +  4147112 TGTCAAACCCACATTCTGACTCGTTTCA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   269260 15 +   591668 TGT----CCCTCGGCCCGG---------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409     83617 549 -   201088 I

a score=177632.000000
s ce10.chrX              4865830 383 + 17718866 --ACACACA-TCCCAAGAAACTGTC----------ACT----AAATCCGTGTTTCAGAGCTTTCAATATGAAAGAAAAAAGCTAGTCATATACA---TGAAGGACGCGTGAGTCGACTTATCGCCA-AATAACAAGACGCGCGGATTTCAGTCGTAATAAAGCGGTTTAAGTCGACGATTATCAGCGGGGCGGAGCTGCGATGAAATCCAAAATCCAGGCGAG-GAGGAAAGAG---CCATTCGTTGTCATTC-AATCTTCACTTTCCATTC-------------CAACATGGGCTCCTCACCTATCC------TCCTGGTACTCGCCATCTCGATCGGCCTAGCTAGTGCTTGTTTCCTGAACTCTTGTCCGTACAGGCGATATGGTAGAACTATTCGCTGTTCCAGTTGTGGTAAGTTAAAAATTT
s cb4.chrX              10211661 377 + 21540570 --CTTGACATTTCCTAATAACTGTC----------ATC----GAATCca----------tatttgaga--aaaaagaggagcgAGTCATCTCATGTAAAATGGACATGTGAGACGACTTATCGTCCGCCCCGCAAGCTGAG----ATCGAGTCGTAATAAAGCGGTTTAAATCGACGATTATCATATGGGCGGAGC--TTTCT----------TCAAGCACAG------AAGAGCCACCACCAGTTTTCAGTCACATCCTCACTTT-CATTATTCCCACCAGCAGCGACATGCGCTCGTTACCTATCCATCTCCTTCTGGTGCTCATCGTTTCGGTTGGCCTTGTCAATGCCTGCTTCCTGAACTCGTGCCCGTACAGAAGATATGGGCGAACCATCCGGTGCTCTAGTTGCGGTAAGATTATCAATG
i cb4.chrX              I 14 I 1
s caeRem4.Crem_Contig0   1754443 371 -  4500979 -------AATTTCTCAGTAACTGTT----------CTT----AAATCCAATACAGAGCTTtctcgaga--gaaaaaaaaatcgagtcaTCTAGT---AGATGGACGCGTGAGACGTCTTATCGTCC-CCCGACAAGCCGAG----ATCCAGTCGTAATAAAGCTGTTTAAGTCGAAGATAATCGTTGGGGCGGTCC--CGACG------GCAATCCAGCACAGGGATGAAAGAG---CCGCCGATTGTCATTC-CATCCTCACTTT-CATTC-------------CGACATGCGCTCGTTACCTGTCCATCTTCTTCTGGTGCTCACCATATCGGTCGCGCTTGTCGGCGCCTGCTTCCTTAACTCATGTCCCTACAGAAGATACGGAAGAACTATCCGCTGCTCAAGCTGTGGTAAGTTACTTAATA
i caeRem4.Crem_Contig0  I 9 I 40
s caeSp111.Scaffold409     84166 375 -   201088 --ACAGACATTTCTTAGTAACTGTC----------CCTTGTGAAATCCTTGTTTAGCTTTATTCGCAA--AA---GGAAATCGAGTCATCTTAA---TGATAGATGCATGAGTCGACTTATCGGCC-CCCGGCAAGCTGACT---CTCCTGTCGTAATAAAGCTGTTTAAGTCGGCGATAATCGT-TGGGCGGT-C--CGATG------GAAATCCAGCACGG-GCTGAGAGGG---CCGCCGATTGCCATTC-CATCttcacttt-cattt-------------tgacATGCGCTCGTTACCTGCCCGCATTTTGCTGGTGCTCGTCATCTCCATCGGGCTCGCCGGAGCCTGTTTCCTCAACTCATGCCCATACAGAAGATATGGTAGAACCATCCGTTGCTCAAGCTGTGGTAAGTTACTTATTC
i caeSp111.Scaffold409  I 549 I 1
s caePb3.Scfld02_0       3123140 362 +  4147112 --TCTGACATTTCCAAGTAACTATC----------CCT----AAATCCATGTCTTACAGCTttcgcga--aa----aaaatcgagtcaTCTACA---AGATAGATGCGTGAGTCGACTTATCGTCC-CCCGACAAGCCGAC----AGCCAGTCGTAATAAAGCTGTTTAAGTCGATGATAATCGT-TGGGCGGT-C--CGATG------GAAATCCAGCACAA-GAGGAGAGAG---C-------TGCCATTC-CATCTTCACTTT-CATTC-------------CGACATGCGCTCGTTACCTGTCCATCTTCTCTTGATGCTCGTCATCTCGAGTAGCCTTGTCGGTGCCTGCTTCCTAAACTCGTGCCCTTACAGAAGGTATGGAAGAACCATCCGATGCTCAAGCTGTGGTGAGTTACCGTTAC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   269275 357 +   591668 ACACGCAAGTCTTTAACTTACCATCATAAGTCTGTCTC----AAATCTTTGCTTTCAAATTTTGGCAA--GA---AAAATCCAAACCATGTACG---GGGTCTCCTCGTCAG----CTTATCGTCT-CCTC--------------ATTCATGCGCATTAAAGCTGTTTAAGTCGACGAT----ATATGGGCGGG-G--CAATG-------AAATCCTGCCTGA-GCCACGCGAG---ACAACGGCTCTCATTC------TCACTTT-CATTC-------------CGAAATGCGCTCGTTACCTGTCCTCTTCCTTGTCGGTTTAGTTTTTTCATCTGGTCTCGTAACTTCGTGTTTCCTCAACTCGTGCCCGTACAGAAGATACGGACGAACCATTCGTTGCTCCAGTTGCGgtaagtcaaaaaa--
i caeJap4.Scaffold17934 C 0 C 0

a score=-12381.000000
s ce10.chrX              4866213 39 + 17718866 -AAAGGAATCCGAACAAAAAATTATCTTATGCTCTAATTT--
s cb4.chrX              10212039 24 + 21540570 -----CATTTTctatgatta-----------ctgtagaag--
i cb4.chrX              I 1 I 4
s caeSp111.Scaffold409     84542 22 -   201088 -------GTTAGAATGCACA-----------TTCTGGATC--
i caeSp111.Scaffold409  I 1 I 7
s caePb3.Scfld02_0       3123503 20 +  4147112 -------TTTGAAACGTGA-------------TTTAAGTT--
i caePb3.Scfld02_0      I 1 I 10
s caeJap4.Scaffold17934   269632 42 +   591668 aaaagttttcaaaattcgtCAGTGAatgctttttttgtttac
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1754814 40 -  4500979 I

a score=140070.000000
s ce10.chrX              4866252 296 + 17718866 AGGAATAGAAAACGAAGGAGTTTGTATTTCTGAGGGAAGGTGTTGCACCAACGAGGAATGCTTCATGTCAACCGAGTGCAGCTACAGTGCCGTTTGCCCAGAACTTTTTTGCAAGGTT---TG-----------------AATTTAGCATGTTGAAATAAGTAATAATGTGACGGAAGTTTAGATTGGACACCACCCAGGATATTGCATGAAAAAGGGATACTGCTGTACTCAAGGTACAC----------------------TTTTGAAACTTAAAAAATGTAAAACTATACAAGTTTGG------------------------TTCCAGGTGGATGTCAAACAAGTGCAATGTGTTAAAC----
s cb4.chrX              10212067 288 + 21540570 AGGCGTTGAGAATGAGGGTGTCTGCGTTGCCGAGGAGAAGTGTTGTACCAACGAAGAATGCTTCATGACCACCGAATGCGCCTACAACTCCGTCTGTCCAGAGCTCTTCTGCAAGGTGCAGTAGTCTT---------GTataatccaaatt--tcgaaacttgtt-------------TTCAGATTGGAATCCACCCAGGATACTGCATGAAGAAGGGATACTGCTGCACTCAAGGTAACC----------------------CCGTTTTgc----gattttctattttgatttaatcaat------------------------tttcaggaggATGTCAAACAAGTGCGATGTGCTGACC----
i cb4.chrX              I 4 I 45
s caeRem4.Crem_Contig0   1754854 310 -  4500979 AGGAATTGAAAACGAAGGAGTCTGTGTATCCGAGGGGAAGTGTTGTACCAACGAAGAATGCTTCTTGTCAAACGAATGTAGCTACAACTCTGTCTGTCCTGAACTTTTCTGCAAGGTATTGTA---------------CATCAATCGGGTTTATCAGTATTCATTAATGAAA------TTCAGATTGGTCATCACCCAGGATACTGCATGAAGAAAGGATACTGCTGTACTCAAGGT--------------------------TTGTTCTA-----GATTCTTAAATTCATTCTCATGTATTGAAATATATGTTCATCTCTGTAATTTCAGGAGGCTGTCAATCAAGTGCAATGTGCTGAAC----
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold409     84571 290 -   201088 AGGACCCGAAAACGAAGGGGTGTGTGTCGGTGAAGGAAAATGCTGTACCAATGAAGAATGCTTTGTCTCAAACGAATGTACCTACAACTCTGTGTGCCCGGAACTGTTCTGCAAGgta----------------------aaattatcattttgtgAAGCTGACCATAtttattctgtttcagaTTGGCCATCTCCCAGGATACTGCATGAAAAAGGGATATTGCTGTACTCAAGGTAATTTG------------ATAAC---TTGTCTATC----acattataatttttgttt-------------------------------ctccaGGAGGATGCCAGACAAGTGCAATGTGCTAAGC----
i caeSp111.Scaffold409  I 7 C 0
s caePb3.Scfld02_0       3123533 305 +  4147112 AGGTATTGAAAACGAAGGAGTCTGTGTTGGTGAGGGGAAATGCTGCTCCAACGAGGagtgttttgtttcaaacgaATGTACCTACACTTCTGTCTGCCCAGAACTCTTCTGCAaggtattctg-----------------aaattttgattttgtttgatTTACTCATGAAACTGTGTTTTAGATCGGTCATCATCCAGGATACTGCATGAAAAAAGGATATTGCTGTACCCAAGGTAAGTTGC-------CCTTATTTCCCTTTGTATGTCTT--GAAAcgtatcttttttct-------------------------------ttctaggAGGATGTCAAACCAGTGCCATGTGCTAATC----
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   269674 313 +   591668 agGACCAGAATCTGAAGGAGTCTGTGTGTCCGAAGGAAAGTGCTGCACAAATGAGGAATGCTATGCCACAGATGAATGCAACTACGTATCCGTTTGTCCAGAGCTCTTCTGCAAGGTAGATTAAACTTTAACAAAagataaaatattgatttttttttaat-----------------ttcaggttAATCATCATCCGGGATACTGCATGAAAAAAGGATATTGCTGCACTCAAGGTAAATGATGAACTAACCTGAAATCCAAATGAATGTc----gattttcaataattttc--------------------------------ttGCAGGAGGCTGTCGATTCAGCGCAATGTGTTAATTTGGC
i caeJap4.Scaffold17934 C 0 C 0

a score=-5406.000000
s ce10.chrX              4866548 26 + 17718866 GGATCAAGCAAGCAAAATCT-----TCAGGA--
s caeRem4.Crem_Contig0   1755164 16 -  4500979 TGTTTGGAAA---------------CCTGGA--
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold409     84861 16 -   201088 GGATAAGGAC---------------TCGGAA--
i caeSp111.Scaffold409  C 0 I 10
s caePb3.Scfld02_0       3123838 16 +  4147112 GGATTGGACG---------------tctgaa--
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   269987 19 +   591668 --------------GTTTCTTTCTACCaaaaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10212355 45 + 21540570 I

a score=385234.000000
s ce10.chrX              4866574  986 + 17718866  
s cb4.chrX              10212400 1073 + 21540570  
i cb4.chrX              I 45 I 3
s caeRem4.Crem_Contig0   1755195  976 -  4500979  
i caeRem4.Crem_Contig0  I 15 I 157
s caeSp111.Scaffold409     84887  981 -   201088  
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3123861  990 +  4147112  
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   270006 1123 +   591668  
i caeJap4.Scaffold17934 C 0 I 35

a score=-2705.000000
s ce10.chrX              4867560 17 + 17718866 ---AACGATGATTAAGATTG-----
s cb4.chrX              10213476 14 + 21540570 ---catGATTATTATCa--------
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold409     85868 15 -   201088 -----CGTGTATTGTGATAG-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3124851 17 +  4147112 ---AAAGAGTATTAtgattg-----
i caePb3.Scfld02_0      C 0 I 137
s caeJap4.Scaffold17934   271164 25 +   591668 ATCCATACTTACTATTAATAGAATA
i caeJap4.Scaffold17934 I 35 C 0
e caeRem4.Crem_Contig0   1756171 157 -  4500979 I

a score=-1172.000000
s ce10.chrX              4867577 11 + 17718866 ---------TAAGCTTGCAA
s cb4.chrX              10213490 11 + 21540570 ---------cagttttgcaa
i cb4.chrX              C 0 I 1190
s caeSp111.Scaffold409     85883 10 -   201088 ---------TATTATTCCA-
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   271189 20 +   591668 TAAATCAAGAGATCTTATAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3124868 137 +  4147112 I
e caeRem4.Crem_Contig0   1756171 157 -  4500979 I

a score=455.000000
s ce10.chrX              4867588 6 + 17718866 TCCGTT
s caeSp111.Scaffold409     85893 1 -   201088 -----T
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   271209 6 +   591668 TCCGTT
i caeJap4.Scaffold17934 C 0 I 53
e caePb3.Scfld02_0       3124868 137 +  4147112 I
e cb4.chrX              10213501 1190 + 21540570 I
e caeRem4.Crem_Contig0   1756171 157 -  4500979 I

a score=25.000000
s ce10.chrX              4867594 12 + 17718866 GCAGGAGGAGCG
s caeSp111.Scaffold409     85894 11 -   201088 GCAAAAACA-CG
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3124868 137 +  4147112 I
e caeJap4.Scaffold17934   271215 53 +   591668 I
e cb4.chrX              10213501 1190 + 21540570 I
e caeRem4.Crem_Contig0   1756171 157 -  4500979 I

a score=-1407.000000
s ce10.chrX              4867606  7 + 17718866 GGCAGat-----------
s caeRem4.Crem_Contig0   1756328  7 -  4500979 gggaaat-----------
i caeRem4.Crem_Contig0  I 157 C 0
s caeSp111.Scaffold409     85905 16 -   201088 --GATTTTGGACTCAGAC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3124868 137 +  4147112 I
e caeJap4.Scaffold17934   271215 53 +   591668 I
e cb4.chrX              10213501 1190 + 21540570 I

a score=-5335.000000
s ce10.chrX              4867613  3 + 17718866 ------------------------------tta
s caeRem4.Crem_Contig0   1756335 24 -  4500979 ttacTG---------AATTCCAAGAAATAATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     85921 33 -   201088 TTATCGTAtttgtctatttttcatatttttccg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125005 23 +  4147112 TTAATATA-------ACTTCTGATA---GACGG
i caePb3.Scfld02_0      I 137 C 0
e caeJap4.Scaffold17934   271215 53 +   591668 I
e cb4.chrX              10213501 1190 + 21540570 I

a score=-45221.000000
s ce10.chrX              4867616 130 + 17718866 atata----tttttttatttttatt-------------atCAAAATGTC--------------------------------------------------------------GAGTTTTTTGTT----------------------TGCAT-TTTTTGAA-------AACATTTGCG----TGAAAAATC-------------------------------------------------------------------------ACGAAGTTTAAACAA--------------------TCACGTA---------------GTTCAAAGAAT--------------GA-TCTAATTTCACTAATGGAG------
s caeRem4.Crem_Contig0   1756359 247 -  4500979 CTGCAAAActgattgaatttttgttttttatatcaaagttcggaaaattttttcatacttttttgatgtatcaaaaaattcacaaacgTGTTGAATTTGATCCTgaca---gaaattgttttt---------ctacTACCTTATCTAAGCAAACTTGTGTGTACATGACATTTAATGTTCCATTAGATT-------------------------------------------------------------------------ACGTGTTTTA-------------------------TTTTGTAACT----GCTTAACTGTCCAAAGTAT----ATCAAAGCACAC-TTCAATCATCTTAATGGAT------
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold409     85954 227 -   201088 tttca----tcTTTAGACttttgat-------------ttcgaaatgttaCTTGCGGATACTT------------AAACGGTTA---TTAACAATTTTCACTCGAAAACTTGGACTTTTGGTTACTTCCTTGTTAGTCAGAAATTCGGAA-AGCATAAA-GTCTATGACATTTATGATATTGTAAGATT-------------------------------------------------------------------------ACTTATGATAACATT--------------------GCATGTA-------GCTTACAAGTCCAAATTAT----ATTGAGGCCGAC-TTCAATCACACTAATGGAA------
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3125028 324 +  4147112 GTACA----TCG------TTTTGTT-------------ACCGGAAGGTTGTTgctaaaaaagttga------aaagaagtATCA---GTGTTCTGTGTTATTCTTAAgttggagtttttgatt---------ttacaaAGGAATTCACGC-AGTTTGAACGTTAATTGAATTCACAATGcttcaagtttcgaaaactgttcAAACCAGCACGTATTTCCTGGTCGTTCTCTAATCCAAAAACCATAGAGTCCATCACATGCCATTTTTGATAACATTGGATTACTTGTATTATTTTGGCATGTAGATTTGCGCTTAGTAGTCCAAAGTATACAAATTCGTGCGAACTTTCAATCATCCTAAtggaa------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   271268 134 +   591668 ataca----tttttttcttatctat-------------TTCGAAAGACAT-------------------------------------------------------------GACTTCACTGCT---------------------TTTTAT-cctttgaa-------aacattt--------------tt------------------------------------------------------------------------------------------------------------aaccGCA-------GATTATAGGTCCAAAGTAT-TGAAGACGTGTTTGT-TTCACTTATCCTAATGGATGTCGCT
i caeJap4.Scaffold17934 I 53 C 0
e cb4.chrX              10213501 1190 + 21540570 I

a score=315082.000000
s ce10.chrX              4867746 457 + 17718866  
s cb4.chrX              10214691 458 + 21540570  
i cb4.chrX              I 1190 C 0
s caeRem4.Crem_Contig0   1756623 474 -  4500979  
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold409     86186 469 -   201088  
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3125357 476 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   271402 483 +   591668  
i caeJap4.Scaffold17934 C 0 I 163

a score=-2556.000000
s ce10.chrX              4868203 16 + 17718866 AATAATAATAATACAT
s cb4.chrX              10215149 12 + 21540570 aatt----tcacagat
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1757097 16 -  4500979 Acttaaaattctaaat
i caeRem4.Crem_Contig0  C 0 I 189
s caeSp111.Scaffold409     86655  5 -   201088 ACTTA-----------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125833 16 +  4147112 ACTTGTGACAGTATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   271885 163 +   591668 I

a score=-2718.000000
s ce10.chrX              4868219 11 + 17718866 ATATGTAACT-T
s cb4.chrX              10215162 11 + 21540570 ATTTGTAACTT-
i cb4.chrX              I 1 I 146
s caeSp111.Scaffold409     86660  4 -   201088 ------AACT--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125849  8 +  4147112 AAT--CGATT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   271885 163 +   591668 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=-174.000000
s ce10.chrX              4868230 11 + 17718866 GTAACATCAAT
s caeSp111.Scaffold409     86664  2 -   201088 GT---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125857 11 +  4147112 GTAACGTCAGT
i caePb3.Scfld02_0      C 0 I 101
e caeJap4.Scaffold17934   271885 163 +   591668 I
e cb4.chrX              10215173 146 + 21540570 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=810.000000
s ce10.chrX              4868241 20 + 17718866 ATAACATCAATAtcatttac
s caeSp111.Scaffold409     86666 19 -   201088 -CAACAGTAATGTCATTTTT
i caeSp111.Scaffold409  C 0 I 283
e caePb3.Scfld02_0       3125868 101 +  4147112 I
e caeJap4.Scaffold17934   271885 163 +   591668 I
e cb4.chrX              10215173 146 + 21540570 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=0.000000
s ce10.chrX              4868261 472 + 17718866 tatatataaagcgcgtgtccttctgtccctatgtagtttgatctttgatcagagcaacgaaattttgggaaaccttatgctaaatgcgcagcagacatcgatcgaggtccgcgatagacaccgtatatctaatgtgttttctcaaaaaagtcgggggccgcgccgtaggtgcggtccacggctggTATATGTATAAGTAACATCAAATCAAATGCGTCACATTTAATCACACATTTTTTGCATTAAAAACTTATTTTGTTATCCGAAATTCCTTGACTCAAATAGAAACATTTTGGATCGGAATAGAAAACATGACTGATCATGTTTTAGAGTTTCTATATATATTCTTTGATAATTCCGAGAAGTAGGTATAATAAAAAGTCTGGGTGGTAAACTTATTTTTTATTGGAGAATCGGAATTGGAAAAGCGGAAATTTTTTATTGGTTCATCGCCTAGTATTACCCGTGTTAT
e caePb3.Scfld02_0       3125868 101 +  4147112 I
e caeJap4.Scaffold17934   271885 163 +   591668 I
e cb4.chrX              10215173 146 + 21540570 I
e caeSp111.Scaffold409     86685 283 -   201088 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=-228.000000
s ce10.chrX              4868733 57 + 17718866 TTTGGAACTTTGTAGAAGTGCCTTTTTTTGCAAAGAAAATGCGCCTAATTTTGCATA
s caeSp111.Scaffold409     86968 47 -   201088 TTTGGAATTC-----AAATCCTTTTCCGAATGAtgacattttgt-tagttctG----
i caeSp111.Scaffold409  I 283 C 0
e caePb3.Scfld02_0       3125868 101 +  4147112 I
e caeJap4.Scaffold17934   271885 163 +   591668 I
e cb4.chrX              10215173 146 + 21540570 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=-66.000000
s ce10.chrX              4868790 17 + 17718866 TTGAATATTAATATTTT
s caeSp111.Scaffold409     87015  6 -   201088 -----------ACTTGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125969 17 +  4147112 TTGGATGATGGCATTGT
i caePb3.Scfld02_0      I 101 C 0
e caeJap4.Scaffold17934   271885 163 +   591668 I
e cb4.chrX              10215173 146 + 21540570 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=-755.000000
s ce10.chrX              4868807 15 + 17718866 TCAAAAATCTAACAA
s cb4.chrX              10215319 15 + 21540570 TCATAAAACTCAAAA
i cb4.chrX              I 146 C 0
s caeSp111.Scaffold409     87021  6 -   201088 ---CA------ATGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3125986 12 +  4147112 ---CAAAGGCTATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   271885 163 +   591668 I
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=1000.000000
s ce10.chrX              4868822 1 + 17718866 C
s cb4.chrX              10215334 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     87027 1 -   201088 C
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3125998 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   272048 1 +   591668 C
i caeJap4.Scaffold17934 I 163 C 0
e caeRem4.Crem_Contig0   1757113 189 -  4500979 I

a score=512505.000000
s ce10.chrX              4868823 740 + 17718866  
s cb4.chrX              10215335 746 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1757302 734 -  4500979  
i caeRem4.Crem_Contig0  I 189 C 0
s caeSp111.Scaffold409     87033 738 -   201088  
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3126012 694 +  4147112  
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17934   272049 731 +   591668  
i caeJap4.Scaffold17934 C 0 I 658

a score=-37551.000000
s ce10.chrX              4869563 122 + 17718866 TTTTCTGGTTTTTAATTTGATATTT----------------------------------------------------------GTATTTG------------------------AGCAGATTAGATTAATTGA----------------ATTTC-------------ATTTATAGATC-TTGTTTTTCCTTTCTCT----------------ACTTTTGCCGCCAA-------------CTCTCATTT-------------GGAAAGACTCAAACG
s cb4.chrX              10216081 255 + 21540570 ctctgaaaaattttgttttacaatt---------tacaaaactttcaaatatatcggaaacttgacagc---cgagctccagacctctcaaaattgtcaaaatatccataaatcaactgaaaattcccaCCTTTCTGAACGGTACtgtatattcaaaaaaatcgaaacctTATAAATC-AAGTTgtcctattttttctgaatca--------ccAGTTGCCGCCAAAGCCTTTCCAAATATCTCAATCATCCCCGAATCTCTCAACAACATGGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1758036 236 -  4500979 gtttcaattgtttcattttccgtTTGTTTTGTACTGTAATAGTCTGATCTTT-------ACTTTACCGCTGTCGTTTTTTGAATCACTCG----TATTATTGTTTTTCCGGGTTATTCTAATACTCAGATTAATCTCA----TTCCGTCATTTC-------------CTTCATTGATC-TTg-tgttttatgtttttgaaaacatgataATGTCGTATGCCGCCAAAAGCTTTCCTAAATTCTT-ATGACCCCTG------TCAAAGACA---CCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     87771 126 -   201088 gtt---------tCCTTCGACATTC---------------------------------------------------------ATTTCCCA------------------------AACAGAAGGTTTTCAATCAT---------------AATTC-------------------------ATGTTGTTCTCATCATTCTCAACAT--------TGTTTTGCCGCCAAAAACCTATTAAT-TTCCGAATATTCCC--------TCAAAGACA---CCG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3126706 140 +  4147112 GTTTG-------TACTTTTATATCC------------------------------------------------------------TCTCG------------------------AAATCACTAATTCCAATTAC---------------ACTTT--------------ATCATGGATAAATGTATTTCTGTTTTATGTCAAAAC-------GCAATTTACCGCCAAAAAGCCATTTATATTCTCAATATCCCCCT------TCAAAGACA---CCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   272780 658 +   591668 I

a score=98787.000000
s ce10.chrX              4869685 507 + 17718866  
s cb4.chrX              10216336 332 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1758272 400 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     87897 365 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3126846 383 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   273438 409 +   591668  
i caeJap4.Scaffold17934 I 658 I 12

a score=-3742.000000
s ce10.chrX              4870192 27 + 17718866 AAAAAATGAACCGTGAGAGCAAAAAAT
s cb4.chrX              10216668 11 + 21540570 TGAAAGCGAAC----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1758672 11 -  4500979 TAGAGACAAAT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     88262 11 -   201088 gaaaatttaaa----------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3127229 11 +  4147112 GAGTTTTCAAG----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   273847 12 +   591668 I

a score=14366.000000
s ce10.chrX              4870219 489 + 17718866  
s cb4.chrX              10216679 417 + 21540570  
i cb4.chrX              C 0 I 86
s caeRem4.Crem_Contig0   1758683 387 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     88273 343 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3127240 438 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   273859 412 +   591668  
i caeJap4.Scaffold17934 I 12 C 0

a score=-8850.000000
s ce10.chrX              4870708  64 + 17718866 GTTTGATGTCTG---TTAA-ACAAAGAC------------CCTCA------CCCATCTAATAGA------------CCTATTCAA----ATCCTATGGA---AGA------------------------------
s caeRem4.Crem_Contig0   1759070  88 -  4500979 TTCTGA--TCTTTATTTGG--CAGAGATAAAACGATCCGTCTTTGTTCAG-CGGACTCCATTAA------------CTCTCACAATTTCAAATTACGTATTCAAA------------------------------
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold409     88616  90 -   201088 TTTTGATGTCTATGTttggaaaagagataaaacGAACTGGCTTTGTTCTTCCCTTCTCCACCGA------------TTTCTACAAT---AAAGTATGTATGCAAA------------------------------
i caeSp111.Scaffold409  C 0 I 13
s caePb3.Scfld02_0       3127678  82 +  4147112 TTTTGATGTCTGTGTTTGG-AATGAGATAAATTGAACTGGCTTTGTT----CCTATTCGAACGA------------CTTCTCAAAT---TAAGTATGCA---AAA------------------------------
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   274271 122 +   591668 CTTTGT--TCTTCGCTTCA-ATCTGACGAAGGCCATCTACCCTCTAC----CCCATCCAGCCTAACTTTATCTGTCCTCGTGAAAT---TAAGTATGCA---AAATGGtcgtcggaaaacggaaatagaaataga
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10217096  86 + 21540570 I

a score=-19476.000000
s ce10.chrX              4870772 44 + 17718866 AATTGAAGTGAA-----------------------------------------------ACT----CCATTA-------------------TACTCA-ATAC-------TATATCTTCTTTT
s cb4.chrX              10217182 61 + 21540570 AAGTGAAGTAAT------------------------------------------------CAA---CCATTACTTCTCCTTCTACTTCTACtactt---ttc-------taaatttttgttt
i cb4.chrX              I 86 C 0
s caeRem4.Crem_Contig0   1759171 41 -  4500979 AATTGAAGTGG-------------------------------------------------CAC---CCAATA-------------------TACTC---CAC-------TCAATTCTAAGTT
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold409     88719 52 -   201088 aattgaagtgAG-----------------------------------------------ACGA---CGCATA-----------------ACTACTC---TACCCCCaattcttctctcattt
i caeSp111.Scaffold409  I 13 C 0
s caePb3.Scfld02_0       3127773 28 +  4147112 AATTGAAGTGTG-----------------------------------------------GCA-----------------------------------------------CCCTCGTTTAGTT
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17934   274393 98 +   591668 aatagaagtagaaatggatgggaggaacgagaaggaaagaaagaaagaaagaaagaaagacaatTTCCACTA-----------------ACTATGTATGTAC-------TATCTCTACTTTT
i caeJap4.Scaffold17934 C 0 I 32

a score=-2528.000000
s ce10.chrX              4870816 20 + 17718866 TCGAAATTTCTCAATTTAG-----------G
s cb4.chrX              10217243 28 + 21540570 tcaa---ttccGGATGCAACTCGGTTaaaag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1759212 17 -  4500979 ACTA---TTCCGGATGCAGC-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     88771 18 -   201088 tcaa---ttccgGATAGGAG----------A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3127801 17 +  4147112 ACAT---CTCCGGATGCGA-----------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   274491 32 +   591668 I

a score=321121.000000
s ce10.chrX              4870836 570 + 17718866  
s cb4.chrX              10217271 604 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1759229 625 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     88789 603 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3127818 597 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   274523 544 +   591668  
i caeJap4.Scaffold17934 I 32 I 402

a score=37311.000000
s ce10.chrX              4871406 203 + 17718866 AACGGGGGTTACTCCCTCCCTTCCT-----CATGTAAGTTGTGATG-AAGGTCTG-------GTCTTTTGCAC-----------------GAAAGTCTAATCAAGGAAAGTGAA--AGAGAA-----CCAGGCAAAAA------TTGAGGATTGATGGATAGACGCCACTCTCAAGCACCCTC----------AGTGTGTAAAATTAACTTCAAAAAATTCCAGCAGTCGACAATCTTGT-AATTAGTTCAAGTTAT
s cb4.chrX              10217875 212 + 21540570 AA-ATAGGTCCCATCTTTTCTCCTCTTATCCCCGtaaattg------aagttttg-------gcATGTTTGGCGGGTTGGTTGGTGCCACGAAAGTCTAATCAAGTAGAGTGAAA-GGaata-----tgaagaagaaaaaaacctcTAGGATTGATGGACAGGC----ATCTCAAGTACC-----TCTtgtgaaagagagaaaattaacttcgaaaatt---------------tcttct-GATTAGTTCTAGTTAG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1759854 207 -  4500979 AA-ATAGGTCCCCCTCTTTCTCCT------CCCGTAAATTGTTACGAAGGTTTTG-------GCATGCTGCAC------------------AAAGTCTAATCAAGAAGAGTAAGT-Agagaa-----ctgaaagaaaaaa----ttgaggattGATGGATAAACACA-ATCTCAAGCATCCTCCACTTCGTTTAGTGTGTAAaattaacttcaaaaattcctgGCA------AGTCTCGT-AATTAGTCGCAGTTAT
i caeRem4.Crem_Contig0  C 0 I 70
s caeSp111.Scaffold409     89392 199 -   201088 A----Gtggtcctcctcct-----------cccgtAAATTGTAATG-AAGGTTTG-------GCATGAAGTAA------------------GTAGTCTAATCAAGAAGAGTGAAATAGGAAATACCTCCCAGAAAAAAGC-------GGGATGCATggacat-cttc-ttctcaagCACTCTCCAGTAAGTGAAGTGAGTGAAATTAACTTTGAAAGTT-TTGCTA------AATCTCGT-AATTAGTTCTAGTTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3128415 198 +  4147112 AA-ACGGGTCCCTCCTTCTCTTGC------CCCGTAAATTGT-------GGTTTGCCACGATGCACGGGGTAA------------------GTATTCTAATCAagaagagtgaaa-agaaaa-----cccagcaaaaaat-----tgaggattgATGGTTGTACATT-TCCTCAAGCACTCTCCATTCTGTCTAGTGTGTGAAATTAACTACAAAAATC---------------CCTGGCAAATTAGTTAAGGTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275067 402 +   591668 I

a score=-805.000000
s ce10.chrX              4871609 2 + 17718866 CT-
s cb4.chrX              10218090 2 + 21540570 -TT
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold409     89591 2 -   201088 -TC
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3128613 2 +  4147112 -TT
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold17934   275067 402 +   591668 I
e caeRem4.Crem_Contig0   1760061 70 -  4500979 I

a score=718.000000
s ce10.chrX              4871611 4 + 17718866 TCTC
s cb4.chrX              10218092 4 + 21540570 TCtc
i cb4.chrX              C 0 I 192
s caeSp111.Scaffold409     89596 4 -   201088 TATC
i caeSp111.Scaffold409  I 3 C 0
e caePb3.Scfld02_0       3128615 94 +  4147112 I
e caeJap4.Scaffold17934   275067 402 +   591668 I
e caeRem4.Crem_Contig0   1760061 70 -  4500979 I

a score=291.000000
s ce10.chrX              4871615 14 + 17718866 AAGGGTAGAAGTTT
s caeSp111.Scaffold409     89600 14 -   201088 GAAGCTATATGTCT
i caeSp111.Scaffold409  C 0 I 84
e caePb3.Scfld02_0       3128615 94 +  4147112 I
e caeJap4.Scaffold17934   275067 402 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeRem4.Crem_Contig0   1760061 70 -  4500979 I

a score=0.000000
s ce10.chrX              4871629 715 + 17718866  
e caePb3.Scfld02_0       3128615  94 +  4147112 I
e caeJap4.Scaffold17934   275067 402 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeSp111.Scaffold409     89614  84 -   201088 I
e caeRem4.Crem_Contig0   1760061  70 -  4500979 I

a score=333.000000
s ce10.chrX              4872344 5 + 17718866 AAATA
s caePb3.Scfld02_0       3128709 5 +  4147112 AAaca
i caePb3.Scfld02_0      I 94 C 0
e caeJap4.Scaffold17934   275067 402 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeSp111.Scaffold409     89614 84 -   201088 I
e caeRem4.Crem_Contig0   1760061 70 -  4500979 I

a score=273.000000
s ce10.chrX              4872349 1 + 17718866 T
s caeRem4.Crem_Contig0   1760131 1 -  4500979 T
i caeRem4.Crem_Contig0  I 70 C 0
s caePb3.Scfld02_0       3128714 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275067 402 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeSp111.Scaffold409     89614 84 -   201088 I

a score=3929.000000
s ce10.chrX              4872350 17 + 17718866 AGAGAAAAGAAGGAAAA
s caeRem4.Crem_Contig0   1760132 17 -  4500979 acaaaaaaggataaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89698 17 -   201088 aaagaaaagaaagaaaa
i caeSp111.Scaffold409  I 84 C 0
s caePb3.Scfld02_0       3128715 10 +  4147112 -------agaaaaagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275067 402 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I

a score=32806.000000
s ce10.chrX              4872367 67 + 17718866 AAGAA----AAATAAGTCATTGAGGGTTGCCGATATAATTACCGAAAGTT--GGTGTGAAAGTGTG-G--GCCTAG
s caeRem4.Crem_Contig0   1760149 69 -  4500979 acgaa----gaatgaGTCAATGAGGCATGCCGATATAATTACCGAAAGTT--GGTGAGAAAGCTTG-GCGCCCTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89715 69 -   201088 aagaatgagaaatgagtCAATGAGGGATGCCGATATAATTACCGAAAGTT--GATGTGAAAGCATG-G----TTGG
i caeSp111.Scaffold409  C 0 I 7
s caePb3.Scfld02_0       3128725 64 +  4147112 aaga-----aaatgagtcaATGAGGGATGCCGATATAATTACCGAAAGTT--GGTGTGAAAGCTTG-G----CCAT
i caePb3.Scfld02_0      C 0 I 102
s caeJap4.Scaffold17934   275469 67 +   591668 AGGGA----AAATGAGTTAATGAGGTATGCCAATATAATTACCGAAAGTTGGGGGGTGGTGGTGTGCG----CTG-
i caeJap4.Scaffold17934 I 402 C 0
e cb4.chrX              10218096 192 + 21540570 I

a score=-3102.000000
s ce10.chrX              4872434 34 + 17718866 TCTTCTTCTGAATATATGGCAAAGCAAGGAAAAA
s caeRem4.Crem_Contig0   1760218  5 -  4500979 TCTCC-----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89791 33 -   201088 TTTCTGTTCCTACA-ATAACATGGCGACACAAAA
i caeSp111.Scaffold409  I 7 C 0
s caeJap4.Scaffold17934   275536 33 +   591668 TGGTCGTAGAAACA-ATAAtaatgcaatgaaaaa
i caeJap4.Scaffold17934 C 0 I 708
e caePb3.Scfld02_0       3128789 102 +  4147112 I
e cb4.chrX              10218096 192 + 21540570 I

a score=379.000000
s ce10.chrX              4872468 9 + 17718866 ATTTAAGAC
s caeSp111.Scaffold409     89824 9 -   201088 ATATAGGGC
i caeSp111.Scaffold409  C 0 I 46
e caePb3.Scfld02_0       3128789 102 +  4147112 I
e caeJap4.Scaffold17934   275569 708 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeRem4.Crem_Contig0   1760223 0 -  4500979 C

a score=-4413.000000
s ce10.chrX              4872477 320 + 17718866 AAAAACAATTTTAGTAACATAAAGGTATGGTATAATGATAAAATGTTTAAATATCTTTTTTCAAATTAAAGGCAAGTTTTTTTTGAGTAAAAAGTGGTGCATATTGAATTGAAATCTGAAGCACTGCCGCATGAAATGTTAGAATATTAATACTTCAAAAAGAATTAAAACATAAACTTGGAAAAAAAGGTGTTTGATCGACGACTTCCAAAATAAAAATATTTCCTTTTTTTTTTTAAGTTTTATAATGATATTTGGCAATTTTAGTACTCCACCTTCAATTTTCACAGTAGCAGCT-CTTTCAACTGAAAATCTAA----AAT
s caeRem4.Crem_Contig0   1760223 120 -  4500979 -------ACTCTGGTCATTCAGAGATGTGG---------------------------------------------------TTTGCGTCTATAG-------------------------------------------------------------------------------AAACATGG---------------------------Caacacaaaa--------------------------ataatgaaagttGGC----TTATTACTAGAATT-----------AGTTTCAGCTACCTTCACTTGAAAAACCAAACATAGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3128789 102 +  4147112 I
e caeJap4.Scaffold17934   275569 708 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I
e caeSp111.Scaffold409     89833  46 -   201088 I

a score=817.000000
s ce10.chrX              4872797 15 + 17718866 TGTACAA----CACGATAC
s caeRem4.Crem_Contig0   1760343 13 -  4500979 TGTACAG----CACTAC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89879 17 -   201088 TGTACAGCCAACACTAC--
i caeSp111.Scaffold409  I 46 I 5
e caePb3.Scfld02_0       3128789 102 +  4147112 I
e caeJap4.Scaffold17934   275569 708 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I

a score=3612.000000
s ce10.chrX              4872812 13 + 17718866 -----CAGACGTAGAAAG
s caeRem4.Crem_Contig0   1760356 18 -  4500979 CACTGCCGATGTAAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89901 13 -   201088 -----GAGATGTAACACG
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3128891 13 +  4147112 -----CAGATGTAAAAAG
i caePb3.Scfld02_0      I 102 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e cb4.chrX              10218096 192 + 21540570 I

a score=114733.000000
s ce10.chrX              4872825 475 + 17718866  
s cb4.chrX              10218288 511 + 21540570  
i cb4.chrX              I 192 C 0
s caeRem4.Crem_Contig0   1760374 478 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     89914 475 -   201088  
i caeSp111.Scaffold409  C 0 I 249
s caePb3.Scfld02_0       3128904 499 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17934   275569 708 +   591668 I

a score=-1434.000000
s ce10.chrX              4873300 56 + 17718866 CGGT-----TTTTCTTTTTATCTTGTGCCTATTGAAACAAGGTAACAATCATTGGATATAA
s cb4.chrX              10218799 41 + 21540570 -agt-----ttcagtttttgggaag--------aagaagagaaattggaaatcgA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1760852 52 -  4500979 -agtttttctttccttttgaagaag--------aaaaaaaggaaaagaaaattgaaaatga
i caeRem4.Crem_Contig0  C 0 I 146
s caePb3.Scfld02_0       3129407 39 +  4147112 aGGT----------TTTTCAGCGtg--------aa----atgaaaggaaaattgaagagaa
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e caeSp111.Scaffold409     90389 249 -   201088 I

a score=-1688.000000
s ce10.chrX              4873356 83 + 17718866 ----------TTTATGATTAATGATAATTGACGATTTATGGGGGATCCATAAAATTTGAACGTCAAAGGTACTTTTTTGTGGGAAAGATTGGT
s cb4.chrX              10218840 58 + 21540570 ----------AAGACGCTTGATGG-ACTAGATGATAAATGGGTGT-------------------AGAAATAGT-----GGGGCAGCGATTGAT
i cb4.chrX              C 0 I 86
s caePb3.Scfld02_0       3129446 57 +  4147112 tgaGAACCGATAGACATTTGATGG-ACTAGATGATAAATGGGTTCT---------------ATAAGCGATAGT--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e caeSp111.Scaffold409     90389 249 -   201088 I
e caeRem4.Crem_Contig0   1760904 146 -  4500979 I

a score=-106.000000
s ce10.chrX              4873439 101 + 17718866 CAAACTAGTATGACGCTTTTTTCGGATATTTTTTGTTCAAAAATAAGTTTGATTACTATTTCAGTTGGGATCTTATTGTTAATTGGAAAAAACAGGTAATT
s caePb3.Scfld02_0       3129503  66 +  4147112 CGTCCCCGAatga---ttttatttgaaatttt-------gaaataa-------tactATTT------------------GAATAGGATAGTAACGGTAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e cb4.chrX              10218898  86 + 21540570 I
e caeSp111.Scaffold409     90389 249 -   201088 I
e caeRem4.Crem_Contig0   1760904 146 -  4500979 I

a score=-19873.000000
s ce10.chrX              4873540 407 + 17718866 TCAAAAAAAAAGTAGTAAAAGATCACATGTGTACATTCTTTAAAAAGTTTCGTGACAAAATTGGAAAAGTTTTAAAATTTTCTTAG---TTTAGAAAGATACCTTTCTAAAATATTTCAACTTTGATTTATATGTAGAGTA----AA----------TTTTAAACTATTATAAAAATTAAGTAGATTTCATTAATGAATCTCTGAATGTTACagttttttccgaaatttgaagcactgttgcatgtttgaaaccctcaaatgttgtaataagtttattacaaacctaattaaaaattaaaatgaggagaaacggtattttttgagcgacgacattaaaaaattgc---------gtaaactgagtttttaccactttttgactcgaaaaaaaattgaaacatttttgaaacgtttatgatatttggttatttt
s cb4.chrX              10218984 295 + 21540570 tgaaaaaaatgatggtGGTGGCTTacactttta---ttttta-------tcgtga--------aacctgtaattgaCGGCCCCCACAC-TTTTGAGCt-tagttatct----cgattc--ctttgaaaaatatgaaaaatgtgacaaCTGACCAAtcatttctgatatcatgataaccaattt----------atcagttgactactgtTTTGCATCTCT--GAAAT---AAACACAG---CAAAATTGG------CTCGCAtttaaa--agttagggacccttctattaacaggttta----------------------------acggtataCCAGATTTTC--CCTGTTTGTCAACTG----------------------------------------TTGAGAAATACTTAT----------------
i cb4.chrX              I 86 C 0
s caePb3.Scfld02_0       3129569 270 +  4147112 -----------------GCAACCACCACTT---------------------ATGa--------gccatatttcaaaatactcCCGAGCACTTAGCGCTATAAAAAtcc----tatttc--ttttgaa----atgaaacgTATGGTAG----------ATTTCGGTAGACTTCGAAATCAACTC-----------TAAATTTCAGACCGTTTCCGATTCC------AT---TTGCACAG--ACACTTTGGG------CCTATActcgaaataattttcgagaattttgaaaaaaagttt------------------------------tggaaaagggGAATTTCGAATTGGTAGCAAACCGTG--------------------------AAAGCCCAAAATTTTAGAGAACtttattat-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e caeSp111.Scaffold409     90389 249 -   201088 I
e caeRem4.Crem_Contig0   1760904 146 -  4500979 I

a score=-28301.000000
s ce10.chrX              4873947 181 + 17718866 agaactatagaaatggtACTTCAACTCTAGAT----AATTTTATGTCATAATTTGCAAAAACTTTAAAATCCTGAATTC---TGCCCAAAATATTTCGGAATTTTTCAAAAGTCAAACAATTACAATTTTCTGTGGGGTTCGACTACTTTTCCAACAATAAAAA-----TTCAAAGCCAC---AATTGAAAGGTCT-----------
s cb4.chrX              10219279  31 + 21540570 ------------------------ATCTGGAT--------------------------------------------------AAAccaaa-------------------------------------------------------------------------------ctc---------------agaaactcagt--------c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1761050 188 -  4500979 AGAACTTTTAAATTGTTAC-----ATTTCGATTTCAGAATATATATCA-TGTtggcaaaaaattcaatactataaacttggaaaaccaaa--------aaacgttgtgaaagtcaaaaaatgaaaggttTCAGCAAGA--AAGctacatgtttcaaaacattaattCTTCTCGATATTGA---AAGAGGAAGCCCAATAAAATGCAC
i caeRem4.Crem_Contig0  I 146 C 0
s caePb3.Scfld02_0       3129839 136 +  4147112 ------------------------------------gaaaatttgttg-aactGGCCCaaaa--------------------aaaCCCCAGTA-----GACTCTTTCCGAAACCCAATTGCACAGGTTTTGGGCCCTA--AAACCTAGACTaaaaaaaTCTTGA-----CTCAATGAAGGACTAGAATTAAACCTCTTGTAGAGC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I
e caeSp111.Scaffold409     90389 249 -   201088 I

a score=27905.000000
s ce10.chrX              4874128 121 + 17718866 AATTAAAAACATCTTGGTCCACG----AACAC-------CACACGTGTTATATT-----TA----TTCCCCGG--AACT------TGCAAAAAACTTCTTC--------AGTGAC-GAAAACAGATGGTCACAAACAAACAATTTTGACACGTCGT-----CG
s cb4.chrX              10219310 131 + 21540570 AATTAAAAACATCTTGCTCTGGA----------------CACACAGGATATTTTATAGACA----TCTGCCGA--AACTAAGAAGTGGAGAGAACTCCTCCACAAGCAAAACGACTAAAAACAGATGGTCAT----------TTTGCTTTCCTCTTCTCCAAg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1761238 127 -  4500979 AATTAAAAACATCTTGGTCCGGGTCGAAACAGAACACACCACACGTGTTATTTTATAGTCA----TCTGCCGG--AACT------TGGAAAAATC--------------GACGAC-AAAAACAGATGGTCACCC----ACGATTTGCTTTCAATGT-----AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     90638 129 -   201088 aattaaaaacatCTTGGTCCGAT-TGGAACAGACCGGT-CACACGTGTTATTTTATGGTTGCTTTTTTCCCGGAAAACG------TGGGACAA-----------------AATAC-AAGAACAGATGGTCACAC---GAAGATTCTTATCTGTTGC-----CT
i caeSp111.Scaffold409  I 249 C 0
s caePb3.Scfld02_0       3129975 125 +  4147112 AATTAAAAACATCTTGGTCCGAT-TGGAACAAAATGAC-CGCACGTGTTATTTTATTGTCA----TCTGCCGg--aact------tggaaaaatg--------------gaCGAC-AAAAACAGATGGTCACAC----ACGATTTGCTTTCGTTGC-----CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   275569 708 +   591668 I

a score=56599.000000
s ce10.chrX              4874249 168 + 17718866 TCATAGAT-CAAAAAAGAGGATGTGATAGCGGATAGAAGTGGGTCACTCA----GTAACAATTGTGTGTCTCTTTTCCCTCTACAAAACAACACTTACGTCTTCATAAACCGTCGCGGTGCGCGATGGGGCATCTCAT----------------GTAG-ATTA----TTTCAGA--ATGGTTTCAGACAAAATTGA----
s cb4.chrX              10219441 133 + 21540570 taacaaat-aaaaaaaggatGTGTGATAAGAGATAAAAGTGGGTCAACCG----------------------------------AAAACAACACTTACTTTTTTAGAAACCGTCGCGAT------TGAGGCATTTTAT--------GAGCTCGAGTAA-GATTG---TATAGAA-------GATAGA---AACTAG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1761365 164 -  4500979 TCATAGAT-CAAAAAAGAGGATGTGATAGCGGATAGAAGTGGGTCAGTCA----GTAACAATTGTGTGTGTCTCTTTTCCC-ACAAAACAACACTTACGTCTTCAGGAACCGTCTCGAGGGACGATGGGGCATCTCAT----------------ACAA-AATTGAGCTGTAGGT-------TTCAGA--TAACTAG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     90767 175 -   201088 TCatagat-caaaaaagaggatgTGATAGCGGATAGAAGTGGGTCAGTCA----GTTacaaa----tctttttctcttcac-aaAACACAACACTTACGTCTTCAAAAACCGTCGAGGCGCGCGATGAGGCATTTCAT----TCGGGAGCT---GTTT-GATagagatttcagaatgatgCTCCGAA---TACACG----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130100 181 +  4147112 TCATAGAT-CAAAAGAGAGGATGTGATAGCGGATAGAAGTGGGTCAGTCA----GTTACAAatctgtcttttcttttttcc-acaaaacaaCACTTACGTCTTTAGAAACCGTCGCGACGCGCGATGAGGCATCTCATGAAAGTTGGAGCCCAAGTTT-ATGAG---TTTCAGA-----GCTTCAGACTCTACTAG----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   276277 170 +   591668 TCACAggtgtaagaaaaaaaagaagaaaaaaaaagtaagtgGGTCACTCACTGAATGACaa-----tgaatttttttaccg-aaaaaataCTACTTACGTTTTCAGAAGCCGTCGCGGTCGACGTTGGGGCATAAGGG----------------GCGGCAATTG---TTTAGAA--GCCGGTAAAGG---AATAAATTGA
i caeJap4.Scaffold17934 I 708 I 23

a score=-8120.000000
s ce10.chrX              4874417 51 + 17718866 TAGTAACGGCTGCCTAGCTTCAGGAAGTCGTT----TAAAAAAGGAATATGGGCT
s cb4.chrX              10219574 26 + 21540570 GAATAG-------------ACAA--------T----GAAAGCGACTTAA----TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1761529 34 -  4500979 CAATAC-------------CAAAAGAATAATT----GATGGCGGTAAAG----TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     90942 40 -   201088 TAATAT-------------TTAGAAAGTTGTTGGGCGGCGGCGGGGACA--GATG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130281 39 +  4147112 TAATACAAAATA-------TTAGGAAGTCGTT----GGCGGCGGGAAAA-----G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   276447 23 +   591668 I

a score=151092.000000
s ce10.chrX              4874468 210 + 17718866 TGGTGGGGAAATT-----GAAAGAACACTTGAA----ATAACGAGAAC----ACGTC-AACTATGAGAGCGGTGACTGGACATCAACTCTTCTCAAATAGAGGTCAGG-CAGTGGAT----------GAGGG----------TGGCTAG----TGGCTAGCCAACCTCAGT-C-AACCGCCGCCAGG-CCCAATAAAATTTATTCGCTATTA----TATTCTGTTCGCAAA---A------GAATGGATGAGATGGGCAGACAAG
s cb4.chrX              10219600 215 + 21540570 Ca-----------------aaagaaaacttgaaaatgacGACG---------ACGTCAAACTATGAGA-----GACTGGACATCAACTCTTTTCAAATAGAGGTCAGGACAGTGGATTGAGAGAAAATAGGGGGAGAGAGATTGGCTAT----TGGCTAGCCAACCGCAGT-CGAACCGCCACCAAGCCCCAATAAAATTTATTCGCTATTA----TATTCTGTTCGG-AAAAGA------GAATGGATGAGATAGGCAGGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1761563 201 -  4500979 TAG----GGAATA-----GAAAGAACACTTGAA----ATGACG---------GCGTC-AACTATGAGAGCGGTGAATGGACATCAACTCTTCTCAAATAGAGGTCAGT-CAGTGGAT---------GTAGGG----------TGGCTAG----TGGCTAGCCAACCGCAGT-C-AACTGCCGCCAGG-CCCAATAAAATTTATTCGCTATTA----TATTCTGTTCGG-AA---A------GAATGGATGAGATAGGCAGACAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     90982 209 -   201088 TAGTTGGGGAATC-----GAAAGAACACTTGAA----ATGACG---------ACGTC-AACTATGAGAGCGCCGACTGGACATCAACTCTTCTCAAATAGAGGTCAGGCCAGTAGAT----------GAGGA----------TGGCTAGTGGATGGCTAGCCAACCGCAGT-C-GACCGCCGCCAAG-CCCAATAAAATTTATTCGCTATTA----TATTTTGTTCGG-AA---A------GAATGGATGAGATAGGCAGACAAG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130320 206 +  4147112 TAGTTATGGAATA-----GAAAGAACACTTGAA----ATGGCG---------ACGTC-AACTATGAGAGCGCCGACTGGACATCAACTCTTCTCAAATAGAGGTCAGG-CAGTGGAT----------GAGGA----------TGGCTAG----TGGCTAGCCAACCGCAGTCC-GACCGCCGCCAGG-CccaataaaatttattcgcTATTA----TATTCTGTTCGGAAA---A------GAATGGATGAGATAGGCAGACAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   276470 218 +   591668 ----TGGCGGATATACAGAAAAGAACACTTGAAAATGATGACGGCGGCGTCGACGTC-AACTA--GAAGCGCCGACTGGACATCAACTCCTCTCAAATAGAGGTCAGC-CGGT-GTT-------------------------AGGCGCG----TGGCTAGCCAACCACAGG-C---CGTCCACCTGC-CCCAATAAACTTCATTTGTCAGTATATGTATTCATTTTGC-AA---AACTTttaaatgcaggaaaaaagagaacaag
i caeJap4.Scaffold17934 I 23 I 361

a score=34654.000000
s ce10.chrX              4874678 78 + 17718866 TGAGGGCTAGCATGTTTCACGTACT-CGGG-CTTCTCACCTGTTTCCGATGTGGAACTGGACATTCCG-------CT-TGTTGTACTT---
s cb4.chrX              10219815 71 + 21540570 --------AGCATGTTTCACGTGCTACGGA-CTTCTCACCTGTTTTCGATGAGAAACTAGACAATCGG-------TC-CCCTGTAGTT---
i cb4.chrX              C 0 I 177
s caeRem4.Crem_Contig0   1761764 77 -  4500979 TGAGGGCTAGCATGTTTCACGTACT-CGGA-CTTCTCACCTGTTTTCGATGAGAAACTAGCC--TTGT-------TCTTCCAGTACTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91191 90 -   201088 TGAGGGCTAGCATGTTTCACGTACT-CGGATTTTCTCACCtgttttcaatgagaaactAGCTAGCcactctcttttcctctcgtTGTTCTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130526 83 +  4147112 TGAGGGCTAGCATGTTTCACGTACT-TGGATTTTCTCACCTGTTTTCGATGAGAATCTAGCTAGCCAA-------TTCTATTgttgttctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   276688 361 +   591668 I

a score=-1107.000000
s ce10.chrX              4874756 1 + 17718866 T-
s caeRem4.Crem_Contig0   1761841 1 -  4500979 -A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91281 1 -   201088 T-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130609 1 +  4147112 t-
i caePb3.Scfld02_0      C 0 I 172
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I

a score=-1083.000000
s ce10.chrX              4874757 3 + 17718866 TGA---
s caeRem4.Crem_Contig0   1761842 3 -  4500979 ---TCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91282 3 -   201088 GGA---
i caeSp111.Scaffold409  C 0 I 154
e caePb3.Scfld02_0       3130610 172 +  4147112 I
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I

a score=423.000000
s ce10.chrX              4874760 7 + 17718866 TATATTT
s caeRem4.Crem_Contig0   1761845 7 -  4500979 tattttt
i caeRem4.Crem_Contig0  C 0 I 151
e caePb3.Scfld02_0       3130610 172 +  4147112 I
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I
e caeSp111.Scaffold409     91285 154 -   201088 I

a score=0.000000
s ce10.chrX              4874767 616 + 17718866  
e caePb3.Scfld02_0       3130610 172 +  4147112 I
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I
e caeSp111.Scaffold409     91285 154 -   201088 I
e caeRem4.Crem_Contig0   1761852 151 -  4500979 I

a score=91.000000
s ce10.chrX              4875383 1 + 17718866 A
s caePb3.Scfld02_0       3130782 1 +  4147112 A
i caePb3.Scfld02_0      I 172 C 0
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I
e caeSp111.Scaffold409     91285 154 -   201088 I
e caeRem4.Crem_Contig0   1761852 151 -  4500979 I

a score=1119.000000
s ce10.chrX              4875384 4 + 17718866 ATAC
s caeRem4.Crem_Contig0   1762003 4 -  4500979 ATAC
i caeRem4.Crem_Contig0  I 151 C 0
s caePb3.Scfld02_0       3130783 4 +  4147112 ATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   276688 361 +   591668 I
e cb4.chrX              10219886 177 + 21540570 I
e caeSp111.Scaffold409     91285 154 -   201088 I

a score=247.000000
s ce10.chrX              4875388 2 + 17718866 AG
s cb4.chrX              10220063 2 + 21540570 aa
i cb4.chrX              I 177 C 0
s caeRem4.Crem_Contig0   1762007 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3130787 2 +  4147112 Gg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   276688 361 +   591668 I
e caeSp111.Scaffold409     91285 154 -   201088 I

a score=21528.000000
s ce10.chrX              4875390 83 + 17718866 TGAAA--------------------ATACCCAAAACTTGATTAAGAG-AACTTTCTATTTTTATTTCTTTTCCACTCGCTTTCATTTCTCCTTCTTTGC-------GGAAA
s cb4.chrX              10220065 84 + 21540570 taaac--------------------aaacCCAAAACTTTATCAAAagaaactttcattttttcgtcttcattc-------ttccttcctcttttttctcttttgcgGGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762009 70 -  4500979 TTGA---------------------AAACCCAAAACTTGATCAGAag-aactttcatttttctat---------------ttcctttctctcctttttctgc----GGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91439 62 -   201088 TGGAA--------------------AAACCCGAAACTTGATCGAGAg-aactttccattttt---------------------ctctctttttttctgc-------ggAGA
i caeSp111.Scaffold409  I 154 C 0
s caePb3.Scfld02_0       3130789 94 +  4147112 tgaaaattctattttgatACAATTGAAACCCAAAACTTGATCAAgag-aactttcaatttttcct--tcctcc-------ttcctttctctcattttgc-------GGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   276688 361 +   591668 I

a score=50627.000000
s ce10.chrX              4875473 45 + 17718866 ATCTAATCTTATAAATTCATCAAGTGGACTTGAAG-AAAGTTTATG
s cb4.chrX              10220149 45 + 21540570 ATCTAATCTTATAAATTCATCAAGTGGACTTGAAG-AAAGTTTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762079 45 -  4500979 ATCTAATCTTATAAATTCATCAAGTGGACTTGAAG-AAAGTTTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91501 46 -   201088 ATCTAATCTTATGAATTCATCAAGTGGACTTGAAGAAAAGTTTGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130883 45 +  4147112 ATCTAATCTTATAAATTCATCAAGTGGACTTGAAG-AAAGTTTGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   277049 45 +   591668 aCCCAATCCTATAAATTCATCAACTGGACTTggga-agcatttttt
i caeJap4.Scaffold17934 I 361 I 39

a score=2436.000000
s ce10.chrX              4875518 73 + 17718866 GAAGGAGAATATCGAAAAAAAAACA-CACACACACATGCCTGCGCAGGCGCGTTTTCAGTTGGTGGCAACTTCA
s cb4.chrX              10220194 50 + 21540570 GAAGATGAAAA-----AACAACACACGTTCCAATTGAATATACA---------CT----------ACTTATTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762124 56 -  4500979 GAAAGCAAAGA-----CAAAAAACA-GAGACATTTATACACACA---------TTCTGGT---AGGCAGATTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91547 57 -   201088 GAAGGAaaaga-caacaaaaaaaca-tagacacttcttc---aa---------tttcatt---tggCAGATTCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3130928 59 +  4147112 GAAGGAGAAGA-CTA-AGAAAAACA-CATACACTTCTTCTCTCG---------TTTTGGT---TGGCAGATTca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   277094 39 +   591668 I

a score=179966.000000
s ce10.chrX              4875591 340 + 17718866 G---ATTCTC-------------------------------GAAAATGAGATGAAATTG--------GGGG-ATGGAAGCAAGAAAAAA--GAGAATGATGTAACAGGTTGGAG---------AACCAGTCCAGAAAATCGCAACA------------------TATTAGCTTGGTCGT-TGTCTTG-GAGTGATAAAAA-AGTGGGTAAGTGACT--------GTCGTC------------TTCTTTTTCGTTTCCTTGTATCACTTCGCTTGTTCCAT--------TTAACTTC-------AAAAA-CGTTTT----------TGAAACAAGTTGA----------AGTAAAATGATGAAGAAATGCTTGCTTGGCACGGAATCGAGTAACCTCGA-----ACACGCGTTGAATAATTGGTCGGTGGTCGAGAATAGGAACAAGCAGGTACC-AAAAAAGGCAT-------TGG----CGGCCCGT
s cb4.chrX              10220244 405 + 21540570 gtaaattctcga-aaaatttgaagaaaattctactaagtgggaaaaaaaaacaaaatgaagaaaaacggaa-acaaaTGAGACG------------TGATGTAACAGGTTGAAG---------AACCAGTCCAGAAATTCGCAACA------------------TGTTAGC-TGGTCGT-CGTATTGAAAGTGATAAAAAGATCGGGTAAGTGACT------GAATCAGC------------gtccttctcttcttctt---cttcttttcctgtTCCATCtatttccatcatttttgaaatgaaaaacctatgtatagagagaaagagacaagTGGAATGAGAAATGAGGA-GGTGGGGTTGAA-----CGCTTGGCACCG-ACAGAGTAACCTCGAATAATACACGCGTTGAATAATTGGTC---AGTCGAGAATCGGAACAAGCAGGTACC-AAAAAAGGCATTT---CTTGC----CTCCCTG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762180 355 -  4500979 G---ATTCTCG--AAAAcccgaa------------------gaagaaaaaacgaaattg--------gGAA-GCAAATGAGACGAGAAAT-AGGAATGATGTAACAGGTTGAAG---------AACCAGTCCAGAAAATCGCAACA------------------TATTAGC-TGGTCGT-CGTAGTG-GAGTGATAAAAA-AGCGGGTAAGTGACTGAATCAGAATCAGC------------ATCCATCGCCCATTTCT---CCTCCTATTCTGTTCCAT--------GTCGTTTT-------AAAAACCGATGT----------AGAGACAAGTGGA----------AAAG-GGGGGTGAAGAA-----CGCTTGGCACAGAATAGAGTAACCTCCA-----ACATGCGTTGAATAATTGGCC---GGTCGAGAATAGGAACAAGCAGGTACC-AAAAAAGGCATTTCTGCTTGG----CGACCCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     91604 357 -   201088 G---ATTCtcgagg---------------------------aaaaagaagatgaaacaG--------GGAA-ACGAATGAGACGAGAAAT-GTGAATGATGTAACAGGTTGAAG---------AACCAGTCCAGAAAATCGCAACA------------------TATTAGC-TGGTCGT-CGTATTG-GAGTGATAAAAA-AGCGGGTAAGAGACTGAATCAGAATCAGCCAGCCCATCGTTCTCCctcgtttcttctt---cttcttattcttctgtATGTGT----GTCGTTTC-------AAAaa-cgatgaaga-------agagacaaGTGGG----------AGAG---------AGAA-----CGCTTGGCACAGAATAGAGTAACCTCCA-----ATACGCGTTGAATAATTGGTC---GGTCGAGAATAGGAACAAGCAGGTACC--AAAAAGGCATTTCTGCATGG----CGACCCGt
i caeSp111.Scaffold409  C 0 I 579
s caePb3.Scfld02_0       3130987 359 +  4147112 g---aatctcga-a---------------------------aaaaaaaagatgaaatag--------GGAAGGCAAATGAGACGAGAAATAGGGAATGATGTAACAGGTTGAAG---------AACCAGTCCAGAAAATCGCAACA------------------TATTAGC-TGGTCGT-CGTATTG-GAGTGATAAAAA-AGCGGGTGAGTAGCTGATTCAGAATCAGCCAGTC-------CTTCttcgctt-tcttt---tttctttttctgttccatatat----gtcttttc-------aaaaa-cgatgTAT--------ATAGACAAGTGGA----------AGAGAAGGGGTGAAGAA-----CGCTTGGCACCGAATAGAGTAACCTCCA-----ACACGCGTTGAATAATTGGTT---GGTCGAGAATAGGAACAAGCAGGTACC-AAAAAAGGCATTTCTGCATGG----CGACCCGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   277133 319 +   591668 G---ATTCTC-------------------------------GAAAA------GAGATGA--------GAAA-------------------------TGATGTAACAGGTTGAAGAACTTGAAAAACCAGTCCAGAAA-TCGCAACAtatgtatgtattagttagtattagc-cggtattatgtatta-gagtgatatgta-tgtatgtacatgaAA------AAGTTAGT------------TTCTTTCTCAGTTCtac---aaacttt-------------------tttgtttt-------aaaac-gGGTA-----------AGGAACAAATAGA----------ATAG------TGACGAA-----CGCTTGGCACAG-ATGGAGTAACCTCCA-----ACACGCGTCGAATAATTGGTC---GGTCAAGAATAGGAACAAGCAGGTTCCGAAAAAAGGCAT---CGCTTGGCGACCGACCCGT
i caeJap4.Scaffold17934 I 39 C 0

a score=9132.000000
s ce10.chrX              4875931 37 + 17718866 TTGTC--ATATGGG-AGTGAGGA-AACGAGAAGAAAGAAAG
s cb4.chrX              10220649 33 + 21540570 -------ACAGTGG-AGTAAGGGAAATGGAATGGGAAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762535 38 -  4500979 TTGTC--ATATGTA-AGTGAGGAAAACGGGAGTGAAGAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3131346 40 +  4147112 TTGTCATATATGGG-AGTGAGGACGAAAAACGGGAAGAAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   277452 39 +   591668 TTGTC--ATATGGGAAACGAAGGAAACGAGTAAAAAGGAGG
i caeJap4.Scaffold17934 C 0 I 1868
e caeSp111.Scaffold409     91961 579 -   201088 I

a score=8395.000000
s ce10.chrX              4875968 149 + 17718866 AGGGCGAAAAGAGT---------AATGGTTGCAAAAAG-GGGGAAGGAA--------TACGAATTGTTGAGG--AGCCCATTTAGATGTCGTGAAATATTCAAACTGCTTCGGGGTCCGAAGGCAACTAATTTCT------CGAGTTGGA------GCCAT--GTATCAAATGTTAACAACTG
s cb4.chrX              10220682 158 + 21540570 ATG--GAGGAGAAT-----GGGTAATGGTTGCAAGAAGATGGGGTGGAGCTCTTAGCCCCCATTTG----AGTTCCTCCATTTGTGACTGGTGAAATATTCAAGAG----------CCGGG----ACTAATTCTTTCTGTCCGAGTTCTTGAGTTCATCTTGAGCATTATATTCTGAGAAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762573 154 -  4500979 AGGCCAAAGAGAGT-AAAAGAGTAATGGTTGCAAAAAG--GAGGAGGAA--------TACAAATTG----AG--CAGCCATTTCGAACTGGTGAAATATTTACAAGGAAACTGCATCCCAC----ACTAATTTTTG-----CGAGTTCCC-AGTTCTCCAT--GTTTCAAATGTCGAGAAATG
i caeRem4.Crem_Contig0  C 0 I 226
s caePb3.Scfld02_0       3131386 155 +  4147112 AGGccaagagaaggaaaaagagtaATGGTTGCAATACT-----GAAGAA--------TACGAATTG----AG--GAGCAGTTTGGATCTggtgaaatattcaaaaggaAACTGC--TCGGg-acaactcatttttcaagttcgcATTTTG-AACCCgctgt--ttttcaaat---gacatCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I

a score=-4314.000000
s ce10.chrX              4876117 59 + 17718866 -----AGCGGGCGTGTTCCCTCG------------AGATGGGGTAGGTCAGTCA----------ACATCCTACCCAGAGAGCATAT
s cb4.chrX              10220840 77 + 21540570 ---GCGAagttcctaattttttcagtgtcaCGCAAGAACATCGTGATGACATCAATCTAACTGAACTTCCT------AGAACATCT
i cb4.chrX              C 0 I 102
s caePb3.Scfld02_0       3131541 64 +  4147112 TACTCAAAGTTCCT--TCCTTCC------------GAATGTT-TTATTCCTTCAGTTGACATGTACAGTTT-------GAGCATGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=-2268.000000
s ce10.chrX              4876176  72 + 17718866 AATTTATCAAAAATTTCAGTATATTGAAACT------------AATATATTTTC---------------------CCTTGTGGTTCATGA------------------------------ATCATTATTTGAAAC------------------
s caePb3.Scfld02_0       3131605 149 +  4147112 AATCTTCTCGAATATACA----ATTGAAACTTCTCGGACCAGAAAAACATTGGCGAGAGTTTTATTTGGAGAACAACTTTTGATCTACGAGGGTCAAGCAATAAATTATAACAATTTCACAACTTTGTTTGGaatttgaatgagaaaaaattg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e cb4.chrX              10220917 102 + 21540570 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=-6699.000000
s ce10.chrX              4876248 114 + 17718866 ----AGTAAATTTGTTGTTCAAAAAGTATCGAGTAGATAAT---TTTAAGTT---TCATATGTGTACTATATTCTCTCTAAAAGTAGG-----GCAATTTT---------------------------TTAAAT---------------GTTGGT-GACTTGTAATTTGTTG
s cb4.chrX              10221019 164 + 21540570 AgtaagccaaattttcaaaaaaccgatatACCGTAAAGA-----CTGAAATA---AAATGTTGTCCTTAACTGACAACTATAAGCcgttttatatcattttcttcgaaaatatcagaaagtgaCAAACTGAAAGAATACCTAGCATATCGTTAGTAGACTTAGAGTTAGTTg
i cb4.chrX              I 102 I 104
s caePb3.Scfld02_0       3131754 145 +  4147112 ----agcacAACTGTGGGATGAATAGGACCaggcaaaaaactttttgaagtcgCTACATTTTGAGGTTTCTCGATATctataaataaaatttcatgGTTTT---------------GAAGCGGAAATCTTAGAG-TTAACGACGACgcagttgat---ttttgagttt----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=742.000000
s ce10.chrX              4876362 114 + 17718866 GAGAAGAAACTA-------------AATTTAATA-----ACGTTGAAAAAGTAGATGAAAGTATACATTTTCAAAACTTAATTTCCAACAATTGGAGCAACTGAATGCAAAACTGAGAGAGACAACTAGATA
s caePb3.Scfld02_0       3131899 115 +  4147112 gaaaagaaactaCCCTTGTTGGGAAAATCTTGTGGTTTCACATTGGTAATCGAAATAAAGTCGGAC--TTTCAAAC-----TTTCCGTTAATGAACACAACTAAACTCAAAAT----------AACTGTATA
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e cb4.chrX              10221183 104 + 21540570 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=0.000000
s ce10.chrX              4876476 12 + 17718866 CAAGTCACAGTC
e caePb3.Scfld02_0       3132014 45 +  4147112 I
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e cb4.chrX              10221183 104 + 21540570 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=449.000000
s ce10.chrX              4876488 34 + 17718866 TTAATTTTAAAAAAATTCAA-------------------------CCATACTTTCAGCC
s cb4.chrX              10221287 59 + 21540570 ttgaattttcaaaaattcaaaaatcaaaaattcgtgtttCAAATACCGTACTTTCTAAT
i cb4.chrX              I 104 C 0
e caePb3.Scfld02_0       3132014 45 +  4147112 I
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=-11111.000000
s ce10.chrX              4876522 201 + 17718866 ------------------GA--------TGACAGTCGGCA-----CATTGCGACTTTGGTGAA---GTTTTTGAGAAC-CTTCTTGAAA-----CTTTTTAATGAAAAAGCAAATT--ATATTCAAAAATAACACACCAATTTC-CACATTGCTGTAAAAAATCTAATATAA------AACTTCTACACAACGAT-AAAAAAT----TAGATTTTTTTAGTGGGCTAAACAAAATGTGCCG--------CACATCCGTTTTGA
s cb4.chrX              10221346 221 + 21540570 --------------GAACTA---------AAGagtcttcattttttattgtAGGTT--CTGAAATTGCTTCAGTAAATCGTTCTAGATGTAGTTCATTTTAGTTCCAAAATGCCTTACAGCTTCAGCAATAAGCTTAAAATTCAGTAGGCCACTC----ATATTTGAAATGATGAAATGACCTT----TCACGTTCAAAACACtatgttgattttttgaaaggagTCCG-AAAATTTCCCGGCCTA---CTGATTGAT-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3132059 221 +  4147112 gataacTCTCACACGCACGATGGTTCTCTAGAAGTTCTTATACTCCACAGAGAGCTTGCTGAA---GCTTGAGCTAAT-ACTGTAGAGATGA-------TATTTACAAAA----TTTGATGTTTAGAAACAAATCAAACATATA-------ACTC------ATTTGATATCACGTTTTGATCTTCACCTGACAATCTGAGAAC----GTGGTTCTTATAA----------AACACATGCTGATCTAAATATAATCAATTTTGG
i caePb3.Scfld02_0      I 45 I 49
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=-172.000000
s ce10.chrX              4876723 46 + 17718866 AAAAT-TTACGAA-----TACATAGCCAACTACAAGATATTTTTTGAGATTC
s cb4.chrX              10221567 52 + 21540570 AGAATACTATGCAACTCCTACATGTTCTGTAGTATTACGCTTTCTAATGCTC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3132280 49 +  4147112 I
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I
e caeRem4.Crem_Contig0   1762727 226 -  4500979 I

a score=850.000000
s ce10.chrX              4876769 4 + 17718866 AAAA
s cb4.chrX              10221619 3 + 21540570 -AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762953 4 -  4500979 aaaa
i caeRem4.Crem_Contig0  I 226 C 0
e caePb3.Scfld02_0       3132280 49 +  4147112 I
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I

a score=-136.000000
s ce10.chrX              4876773 6 + 17718866 TCGCGT
s cb4.chrX              10221622 6 + 21540570 CCGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1762957 6 -  4500979 CTGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3132329 5 +  4147112 -ttgat
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold17934   277491 1868 +   591668 I
e caeSp111.Scaffold409     91961 579 -   201088 I

a score=-2171.000000
s ce10.chrX              4876779 1 + 17718866 -T
s cb4.chrX              10221628 1 + 21540570 -g
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   1762963 1 -  4500979 -A
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3132334 1 +  4147112 -a
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   279359 1 +   591668 T-
i caeJap4.Scaffold17934 I 1868 C 0
e caeSp111.Scaffold409     91961 579 -   201088 I

a score=348923.000000
s ce10.chrX              4876780 529 + 17718866  
s cb4.chrX              10221668 579 + 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   1762966 523 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409     92540 544 -   201088  
i caeSp111.Scaffold409  I 579 C 0
s caePb3.Scfld02_0       3132336 520 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   279360 580 +   591668  
i caeJap4.Scaffold17934 C 0 I 774

a score=57005.000000
s ce10.chrX              4877309 107 + 17718866 CGGCGAACTCAAACAAAGTGCGATTTTGAACGTCGAACACGAGATCAGAGGATGGAAAAGG--GTGCACTTGACTTTA--TCGATGAAA-GAGCACAAATGAGCCAATGAAT
s cb4.chrX              10222247 102 + 21540570 CGGCGAACTCAAATAGGGTGCGATTTTGAACGCCGAACATAAGATCAGAGGATGGATAAAGATGTGCACTTGACTTTTG-GGGATGAAACGGTCACTAATGAG---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1763489 106 -  4500979 CGGCGAACTCAAACAAAGTGCGATTTTGAACACCGAACACGAGATCAGAGGATGGATAAG---ATGCACTTCACTTTT---GAATGAAACGTTTCCAAATGAGTCAATGAAT
i caeRem4.Crem_Contig0  C 0 I 46
s caeSp111.Scaffold409     93084 104 -   201088 CGGCCAGCTCAAACAAAGTGCGATTTTGAACACCGAACACAAGATCAGTTGAT-----GG---ATGTACTTGACTGTAGAGGGATGAATAGAGCACAAATGAGTGGTTGAAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3132856 108 +  4147112 CGGCGAACTCAAACAAAGTGCGATTTTGAACACCGAACACGAGATCAGAGGATGGATAGG---ATGTACTTGACTTTTG-GGGATGAAACGGGCACAAATGAGTGAATGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-9116.000000
s ce10.chrX              4877416 62 + 17718866 CAGATCAAACGAGATACTTTTCGAGCAGATTGGAAAATCACCAGAGTTAGGCTCTTAGGTTT
s cb4.chrX              10222349 21 + 21540570 -----------------TTTTtaaattgagtgaaaatg------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     93188 44 -   201088 -----AATGGAATAATGAGATTTGATTCAATGGGAAAGGCCTAGAGGGG-------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3132964 52 +  4147112 -----GGGAGATAATAGAGGCTACACTCTTTTGGGAAGCATTTGAGCGGAACAATGC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeRem4.Crem_Contig0   1763595 46 -  4500979 I

a score=-66931.000000
s ce10.chrX              4877478 252 + 17718866 CGAAAAAGTCAATTTCTGAGCCAAATAATGAGCAAT--------------------------------------------------------AAAATTACAATTGTTGTTTGTAGTCAGTGTTTCTGAAAACAAATTTTTTGTGATTTCAGGAGATATT-----------GGTTCAGGGTT---AGGAA---------------ATTAAGACAAAAAGAAGAATTTTCTGAAAAGCTACGAAAACGTAGAAAAGCTAATG-----GGAACTTCTGGAATGTTTTGGCGACCGG-TGGAAAATTTGTAAAACGTTCGGAAATTTTTGAAAAGTTGTAAAACTTC---
s cb4.chrX              10222370 153 + 21540570 aAGGGAAATTATTTAATGGTCCAAATAAT--TCATC--------------------------------------------------------TTGAGT------------------------------------------------------TCTTACT-----------CAGTCAGTGTT---CGGAatgta-----------attttaa-------------aattggaa----ctcagaaaaatgtaa-----aata------------cAGAAAGGTTGCACTGATTCG-TAAAAAC------------------TTTACTTAGAAAATGTGACGCATC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1763641 203 -  4500979 -CGACTAATTCATTTTCGTTCAGAAAAGT--GCAAC--------------------------------------------------------TAGATTAGAAC--------------ATAGTTGCAAAAGAGA-----------------TGCCACATT----------GCggtcaaaatt---cgaaaagtacAACTCTTGGTAGTACAA-------------GCTATGTA----TTTCGAGAAGTACAAAAACGAATAACTGTTGAA--TCAGTATTGTagaaaaaattcgatgaaTAC------------------ATGACAAAGGAGGTGTAACATTTC---
i caeRem4.Crem_Contig0  I 46 I 15
s caeSp111.Scaffold409     93232 105 -   201088 -----------------------AGAAGA--GTATT--------------------------------------------------------GAAAGTGCAACCGATG--------CAAAGCAACAAAT---------------------GATTCTACT------------AGTCAGGGca-aacggaa---------------atttt---------------tttttcaa----tctggAAGC-------------------------------------------------TATATGT-----------------------------------GACCATCTTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3133016 253 +  4147112 ---------------------CAAAAAGT--GCATTCTACGAATAGTTCAGTTACACTTTCAATACCGACCGGGATTTGAGTCGCCGGTTACCAAAATAGAATTcatg---------aaagtttcaaatgatGAATTAC---TGAAATAGGATTCGGCTCAAGTTATTGGCAATCAGATCCTAGCGCAG---------------attataa-------------tttttata----ttgGAAAGCATA--------GTTC------------GAAAACCGTTCCATAGATCCA-TATTTGTTTC-TAGA---TTCCAAAATGAACTTGAATGT-TAGCCCAACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-5794.000000
s ce10.chrX              4877730 31 + 17718866 AAGAAAAAAGTTCAGAAGAATTCTGAAGAGA
s cb4.chrX              10222523 11 + 21540570 --------------GTCCAGGtttg------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     93337 12 -   201088 ----AACA-------------CTTATATA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3133269 25 +  4147112 ----AAAATGACTTGTTTATCTCTAAAGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeRem4.Crem_Contig0   1763844 15 -  4500979 I

a score=-29397.000000
s ce10.chrX              4877761  76 + 17718866 --------TCAACAACCCTAGGGAAAATATGCATTTTATTTAGTTCCAGAAATGTTGAAAAGTTTTCTAAAGAATTC-----------------------------------------------------TATAACT-----------------
s cb4.chrX              10222534  21 + 21540570 ------------------------aaatttac--------------------------------------------------------------------------------------------------aatttCCT-----TTCCT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1763859  46 -  4500979 --------tccaca-------aaaaaaaataccgAGA---------------------------------------------------------------------------------------------GATTTTATAGATGTTACTGGAACA
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold409     93349  31 -   201088 TTGAGTTgctgatt-------gaaaaaattg---------------------------------------------------------------------------------------------------tatagCC-----------------
i caeSp111.Scaffold409  C 0 I 54
s caePb3.Scfld02_0       3133294 130 +  4147112 TTGGAATATTAACT-------GCAAACCTTGATGAAAATTCATTAGTAGAAACAGCCAGATGATATTTAACAGATCCTGCATCCTATCAAACTCAATTTGGTAGCAAGGAAATGGTACCCAAAACTCCCATATGGAC-----------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-10851.000000
s ce10.chrX              4877837 60 + 17718866 TCAGAAACCCATAAGTTCTAACAATTCAACAA-ATATGAAAATACTCCTAAAATAACTAAA----------------------
s cb4.chrX              10222555 26 + 21540570 --------------------CCAAACTCTCAAGAT-----------------gcaaagaacaa--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1763905 66 -  4500979 TTGA---------------GCCAATCGAGCAAGATATTTATGAATTCCAGAAGCAA--AACAATATTCTTGAGGACCACAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3133425 51 +  4147112 ttaaaaaacttca---ttcaacaAATGTCTAAGGT----------TTTCGAAGCTATAAAGGAT-------------------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93380 54 -   201088 I

a score=-2006.000000
s ce10.chrX              4877897 60 + 17718866 ---------CTAAAATTTGAAAAAATAAAAGTTCCAGAAGAAAAGTTCAAATTGAGAAATAATTTTTGA
s cb4.chrX              10222581 43 + 21540570 -------------------aaaaaatgaccacTCGacaaa-------ggaagaaaaaagcaatttcTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1763971 50 -  4500979 TTGGTATCTGTGTAAGAGCAAAAAATGACcactc-------------------aaaaaccaatttttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     93434 48 -   201088 ---------TTGcagtattgaaaaatgaccactcg------------ggagaaaaaaaccaatttttga
i caeSp111.Scaffold409  I 54 I 52
s caePb3.Scfld02_0       3133476 50 +  4147112 ---------------CTATGAAAAAGTACGAAGCATAAAT----GTTGCAAGAAGTTATCAGCCCTCGG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-4142.000000
s ce10.chrX              4877957 41 + 17718866 ----------TGTTCAAACA---TTTTAAAAAGAA--CTTTAGTCA-------------------CATTTCTGTA
s cb4.chrX              10222624 72 + 21540570 GCTTCATC-CTTTTGCGGAAGCGGCGTGAAAAACA--CTAGAAGCCTAGTAGCAGAAGCTGCACGAATCGCTGGA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1764021 56 -  4500979 gcttcatcttttttgtgGAA---GCGTGAAAAACA--CTAGAAGCA--------------GCACGAATCGCTGGA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3133527 41 +  4147112 ----------TGttatagaa---ttttgaaatatagtgtggattca--------------ttttcaat-------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93482 52 -   201088 I

a score=-2610.000000
s ce10.chrX              4877998 2 + 17718866 -A-C
s cb4.chrX              10222697 2 + 21540570 GA--
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1764078 2 -  4500979 GA--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409     93534 1 -   201088 -A--
i caeSp111.Scaffold409  I 52 C 0
s caePb3.Scfld02_0       3133568 2 +  4147112 -ac-
i caePb3.Scfld02_0      C 0 I 360
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=158177.000000
s ce10.chrX              4878000 315 + 17718866 TGAAATGACAAGAACAAATGATTTTTTTGGC------ATTTTTGGTGTT-GGTGCATACAACCTC-TTTTGGTGG-TTGTTGGG---------AAAAGTAGTGA------AAGAATGTATTTG--------AGAAGTACGATTCCTTGGGGGCGAATCCGC--GCTTC-------------TTCTTTTTCT------TGCCGCTTTT-----------------CTTTTTCCCGATGGCAACTGAAATTAATATCATCTTTCTT---AAGCTTCTTGGTAAAAAGTAAAATACTGGA----GAGCAGAGACAC-----------------TTGCACATAAAGAAAAAGCAAATAAAAGTGGACAGCTTTGACACT---GGCAGATTGAGGAATCGGAAGCGTTACGGAAACA
s cb4.chrX              10222699 395 + 21540570 TGAGATGACAGAAACAAATGGCTTTTTGTTCGTGTCCGTTTTTAGCGTTAGACGCATACAACCTCTTTTTATTGGTTTGGTGGGAAAGAGGCAAAAAAGTGAGGGACATTGAGAATATATTTTGAGAAAGGAGAAGTACGATTCCTTTGGG--GAATCCGCCTATATCCAT----------TTCTCTATCCC--TC-TCTAGCTTATTTTCTATCTAAATGACGTTTTCTTATGTTGCCAACTGAAATTAATATCATATTTCTTCCGAAGCTTCttggtaaaaaacgtaaaactCTCTGGGAGGCTAAAACTCACACACTTTGGCAAATGCTGCACATAAAGAAAAAGCAAATAAAAGTGGACAGCTCTGACGATGGGGGCAAA--ATAGAATCGGAAGCGTTTCGGAAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764080 334 -  4500979 TGAGATGACAGAAACAAATGGCTTTTTGTTC--GTCCGTTTTTAGCGTTAGACGCATACAACCTCTTTTTATTGG-TTAGTGGG----------AGAAGTGGGA------GAGaatatattttgagaaa--agaagtaCGATTCCTTTGGG--GAATCCGC--GTATCC------------TTTTCTTCCcc--tt-ttctcctcat-----------------ttttcttctgttgcCAACTGAAATTAATATCATCTTTCT----AAGCTTCTTGGTAAAAAGTAAAACACTGGATGAGGGGC-AAGACTCACACAGATT-----CTGTTGCACATGAGGAAAATGCAAATAAAAGTGGACAGCCTT---------GGCAGA--GTAGAAGCGGAAACGTTTCGGAAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     93535 345 -   201088 TGAGATGACAGAAACAAATGGCTTTTTGTTC--GTCCGTTTTAGGCGCT-GGCGCATACAACctctttttattggtttGGTGGG--------AAAAAGTGGGGA------AAGAATATATTTG--------AGAAGTACGATTCCTTTGGG--GAATCCGC--GTatcctcttttcatt--ttctcttccttcatcttttttcttct-----------------tattgcTCTGTTGCCAACTGAAATTAATATCATCTTTCT----AAGCTTCTTGGTTAAAAGTAAAACACTGGA-----GGCCAAGACTCACACAGATA-----CTTTTGCGCGTTGAGAAAAAGCAAACAAAAGTGGACAGCTCTGATTGC---GGCAGA--AAAGAATCGGAAGCGTTTCCGAAACG
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3133930 337 +  4147112 TGAGATGACAGAAACAAATGGCTTTTTGTTC--GTCCGTTTTAGGCGCT-GGCGCATACAACCTCTTTTTATTGG-TTGGTGGG--------AAAAAAGTGGGG------GAGAATATATTTG--------AGAAGTACGATTCCTTTGGG--GAATCCGC--GTATCCtcttttcattgcttctttttccccgtc-ttcttctctt-----------------ttttcttctgttgccGACTGAAATTAATATCATCTTTCT----AAGCTTCTTGGTAAAAAGTAAAAGACTGGA----GGGCAAAGACTCAGAC--------------TGCACatgaagaaaaagcaaataaaaatggaCAGCTCTGACGGT---GGcagt--tgaaaatcgaaaacgttttgaaagcA
i caePb3.Scfld02_0      I 360 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=3053.000000
s ce10.chrX              4878315 12 + 17718866 AAATGAAATGAG
s cb4.chrX              10223094 12 + 21540570 GAATAGGATGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764414 12 -  4500979 AAATTAAATGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     93885 12 -   201088 AAAGGAAATTAG
i caeSp111.Scaffold409  I 5 I 136
e caePb3.Scfld02_0       3134267  0 +  4147112 C
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=875.000000
s ce10.chrX              4878327 25 + 17718866 AAATTGGGTATACGACAAGAAAATG
s cb4.chrX              10223106 21 + 21540570 A----GAGTCTATGAAAATAAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764426 24 -  4500979 A-TTTTGTTATATGAAGGGAAACTG
i caeRem4.Crem_Contig0  C 0 I 10
e caePb3.Scfld02_0       3134267  0 +  4147112 C
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I

a score=-2467.000000
s ce10.chrX              4878352 268 + 17718866 TGGCTGAATTGCTGCAGTTACTAAAGT------TTTGTGTCCATGTAATGTAAACGTATGA-----ACAAGCT-----------TTACAAATTAATTATATAAAAAGGTTTAGTAGCATCAGTA--------------------------------------------GTAATTCT--ATTTT----------------AAATGTTTGAATT----------------------------------------------------TTTTGAACCAA--AATATTGCAAATATCCT------AATATAGGAAATTTTGGGATTTTTGGCAAA--------TTTGACAAATGGTGCATATTTCAAGCACTATAATGTTCAAAAACAATCAAA---------AAACTATTGtaaaaat--aattaaataaaattC
s cb4.chrX              10223127 420 + 21540570 ttgttataaaatttcaacttttggaatttgtaatttttatgtACTTGATGTATATGTCCGATTTTGAGGAGCTGTCAGTAACGATTAC-AATtaatt---tgcgaaattttgatag--tCAGTAGTCCGTTTTTTAATGACAATTTCTCTGAAGTCATGAAGTATTATGTAACTCTGCATTTTTGATGAATCAGaacaaaaatgattcaattcaattttaaaaaattaccgtaacccTGCAAGAGTAGAGTCCTTAATGaataattttgagccaattaatTTATCATGGTTCTTgttgaagatataaaaaaagttgttaatcaTAAcaacacaaacattttatcggctgatacatttttca-----tatcgCGCATAGGAGCCATCAAAAGCTAGCTCAAACTTTAACCAAAATAAAATCAgagcaagttt
i cb4.chrX              C 0 I 26
e caePb3.Scfld02_0       3134267   0 +  4147112 C
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I
e caeRem4.Crem_Contig0   1764450  10 -  4500979 I

a score=0.000000
s ce10.chrX              4878620 24 + 17718866 ACACTGGTAGAACGCTACATTTCA
e caePb3.Scfld02_0       3134267  0 +  4147112 C
e caeJap4.Scaffold17934   279940 774 +   591668 I
e cb4.chrX              10223547 26 + 21540570 I
e caeSp111.Scaffold409     93897 136 -   201088 I
e caeRem4.Crem_Contig0   1764450 10 -  4500979 I

a score=-117.000000
s ce10.chrX              4878644 54 + 17718866 TTTAAGCATTATTAAATTATTAAAAT----TGTATTTACAATCTTTGTTTTTGTAGA-------C
s cb4.chrX              10223573 62 + 21540570 tttgatctcTCTGGAATAAATATGAtacaatatttttaga---tttgcaTTTTTAGGAAGGATTC
i cb4.chrX              I 26 C 0
e caePb3.Scfld02_0       3134267  0 +  4147112 C
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I
e caeRem4.Crem_Contig0   1764450 10 -  4500979 I

a score=-4518.000000
s ce10.chrX              4878698 69 + 17718866 TTTCGGAATTAA-GGATGACAAAACTTTACCAATCTCTAATTTTTGGTTGTAAATGAACGTTTTGAAAAA----------------------
s cb4.chrX              10223635 79 + 21540570 TTTCTAAAATACAGTGGGAGGGAATTT------------ATTAATAA-AGAGAAGGAACTTGttactcaaatttttaaattatttctcgaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3134267 58 +  4147112 TTTCCGAAACGT-GTGGAAGAaggtttca--aat---gaaattatgA-GAGGAATGAAAGCGATA---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I
e caeRem4.Crem_Contig0   1764450 10 -  4500979 I

a score=-2108.000000
s ce10.chrX              4878767 56 + 17718866 AAATTTTGAACATTTTTGAAACTTATTGATGCGTCAG------------TTACTTGATCAAAAATATT-
s cb4.chrX              10223714 47 + 21540570 aaatttcaaactgt----------gaaaaatcttcaa------------tttgaagttcaaataagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764460 61 -  4500979 AAGTTTCTAATATTTCTGAA--TGGAAGAATTGTCAACAACTT------TTCGATTGTCAAAGAAATCT
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0       3134325 53 +  4147112 AAATATCAAAT---------------GAATTCATCAACTATTTATGAGaattgttattcaaaaatatt-
i caePb3.Scfld02_0      C 0 I 60
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I

a score=-7106.000000
s ce10.chrX              4878823  65 + 17718866 ACTATC-------------GCGC---------ACTGA-------TGTTAACAATAGTCTACAGAAAACAACTTGTAAAGAAAAAATTCA----------------------------AAAAA---
s cb4.chrX              10223761 120 + 21540570 ttttttcagatttgacaAAATTCGACTTTCTAGCGGTACCAGACATCTAATAGAAGGCT----AAAACAGTCT-CACACCAAAATTTTAGTATTTAGCACTTCTTCATTACATGCTTAGAAATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764521  58 -  4500979 GTTATC-------------ATTC---------ACTGAGTCA---ATTTAAGAGAG--------AAAACA------ATACGGAAACTgaagaa-------------------------agaaa---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3134378  60 +  4147112 I
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeSp111.Scaffold409     93897 136 -   201088 I

a score=72432.000000
s ce10.chrX              4878888 245 + 17718866 TCACAAGAA---TTCCGGATG------CTATAC-AGACACAACCACACACAAAATAACAT----GAAACGAAAAAAGAAGATCGCCCGACAAC---AGAAACAAAGTAATTTGC---AGACGGTGTACATAATAATGTCGAGAAA--------CGA-AAAAGA-------------------------TGACGACAAAGAAGCAGAAGA-----TTTCACTTTTCC-AAGAAATATGGGGTACCT--GCACTCTATGTTT-------TCTTGAT-TGATTTGAATTTATAC-------ATT---TTTGAACTATTTAACAATTTG
s cb4.chrX              10223881 285 + 21540570 --CTAGAAGATTTTCCGGATG------CGCAGCAGCcatcaaagaag-----aaaaacat----atA--GTAAAATGAAG------CGACAACAAGAGAAACAAAGTAATTTGCTGGATGAGGTGTACATAATAATGTCgagaagaaagagacagc-aaaaaaccgacaggaaagaaagaagagatggagaagtcaaagaagcagaaaaaagattttcacttttcg-aaGGAATAT--TATACCT--GCACCT--TGTTTCTCCTCATCTCGACaagactt---cttcttt--ttcttattccaTCGAAAC--TTTAACGACGTC
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1764579 252 -  4500979 --cgaaaagaatTTCCGGATGTTCGTTCACAAC-GCCACCAATGAAACATGCAAAAACAT----A-----CAAAACGAAAA----CCGACAG-AAGAGAAACAAAGTAATTTGCAGGAGGAGGTGTACATAATAATGTCGagaaaaaagag--cgc-aaagaa---acagaaaa--------------agacgacaaagaagcagaaga-----TTTCACTTTT---GAAGAATAT--TATACCT--GCGCTC--TCTTT-------TCTCGACACGGCTT----TTCCAC--TTGGAACT-------AAC--TTTAACGACTTG
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold409     94033 250 -   201088 TCCTAGAAA---TTCCGGATG----TCCACTGC-Gcaagcaatgaaacacaacaaaaaacagcaa-----gaaaaagaaga----tcgacaacaggagaaacaaagTAATTTGC---AGAAGGTGTACATAATAATGTCGAGACAGGAGAG--CGC-GAAGAC--------AGT--------------AGAAGtcaaagaagcagaaga-----tttcactttttgaaaagaatat--tATACCTGCGCGCTC--TCTTT-------TCTCGACACGACAC----TTCTACAGCTACTATT-----GGAAC--TTTAACGAC---
i caeSp111.Scaffold409  I 136 C 0
s caePb3.Scfld02_0       3134438 237 +  4147112 TCCTAGAAA---TTCCGGATG----TCTACTGC-GCTACCAatgaaacacgaaaaaacac----a-----caaaaagaaga---cccgacaacaagagaaacaaagTAATTTAC---AGGAGGTGTACATAATAATGTCGagaaagaagag--cgaggaaaaa--------aga--------------agaagtcaaagaagcagaaga-----tttcactttt---gaagaatat--taTACCT--GCGCTC--TCTTT-------TCTCGACACGTCTT----TTCTAC-------ATT-----GGAAC--TTTAACGACT--
i caePb3.Scfld02_0      I 60 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-10424.000000
s ce10.chrX              4879133 35 + 17718866 GTTTTTGATA------------------------------TAGAGAAAAAAAAAAATATTTCAAG--------------
s cb4.chrX              10224170 54 + 21540570 -------GTACTCATTTGATGAGGTGTTGTAGGGACTACTCTCGGAAGGGTAGAGCCATTT------------------
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold409     94283 78 -   201088 -TCTTTAGTAGTCGTTGAACGATGTGTCTGACACATTGACTTGAGAAGAGCAGACTAATTGGAAACATGCTATTCCGAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3134675 27 +  4147112 -TCTTTAGTA-CCTTCGGATGA--------------------------------------------ATGAT------GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I
e caeRem4.Crem_Contig0   1764831 34 -  4500979 I

a score=-3230.000000
s ce10.chrX              4879168 31 + 17718866 -------------GTTTTCT----AAACTCAAAACTAATTAGAAAAAA
s cb4.chrX              10224224 22 + 21540570 ---------------GCTAGG-----------AACTAATTGGAAACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764865 31 -  4500979 -------------GTCTTCGGAAGAGCC----AACTAATTGGAAACAC
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold409     94361 32 -   201088 ATTTGACGCGT-------------ACAccggaaattgagaaaaaa---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3134702 48 +  4147112 GTCTGACACGTCTGTCTACGGAAGAGCCCCCAAACTAATTGGAAACAT
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-3588.000000
s ce10.chrX              4879199 18 + 17718866 --AGCTTTA----AAAGTAGTTTC
s cb4.chrX              10224246  7 + 21540570 --GGCATTT---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764896  7 -  4500979 --AACATTC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     94393 13 -   201088 aggacgTGGTGAC-----------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3134750 25 +  4147112 I
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=-14469.000000
s ce10.chrX              4879217 290 + 17718866 ---------------------------------AAACGTTTAACAAAAGCAAGAAATTGGA-------AAATGCTTTTGCGGACTTTATTACTTTTTCAA-GACAGCACA---------------AGAGTTTTCTTCCCGTTTTATTTTCCTGGCCCATTCAAATTTATCGCTTTTC------AAGAAATTCA-TGA---AAG--AAAGATCGGAGTA----GAGAC----------AGTGGAAG---GAATGTCAAAAAT-------------TGAAACTGGAA----------------T-----T----------TAGAAA---ACTCGTGACTT----TCAATATT---CAAATAG-------------------TACATCACATAATTCTAGACCTTATTATCAATGGTCATTTGA----------TCATCAACTTGCGCATCAACATGAATG
s cb4.chrX              10224253 346 + 21540570 TGATATTTGACAC-GCG---AAAAGaaagaattaga--------aaaataaggaaatagGAG------AAAAGCTTC-------AGTATTACTATTTTAGAAAGAGCATGCAATGGCCATGGAAAAAAG-------CCT------TTTTCCTGGCCCATTCAAATTTATCGCTTCCT---TTATAgacttgaa-aaaaggaaaataaagttttgagTA-----------ACTTT---ATTCTAGA---GGGGACTAGAAAT---------AGTCAAAAACTGGAA------GTCATTCA--T-----T-------------------ACATGTGACTCTTAGATAGTATC---TAATGAATTTACGtttttttGTCCTTAATGtcatt---tgatgatttt-----tcattattccCATCGGGTCACTCT-CAATGAAACCAGAATATCAGgtgaggg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1764903 381 -  4500979 CGATATTTGACGCTGCGTGTTagaaaaggaattaga-----aagaaaaaaagaagaagagagacatgaaaaagCTCC-AAGCAGAATATTACTATTTTAG-AGGCACAcgc-----caaaagaaaaaagagttttccgt------ttttcctgGCCCATTCAAATTTATCGCTTTTTATAGTATAGACGTCCA-AAAGTGAGG--GAAGATTGCAGTATGGCAAGGAGTAcgttggaatttgaaaattgaaaattaaaaatcaggGATGAAACCCAAAACTAGAAATTCTTGTCATTCA--TTTCCCT-------------------ACTCGTGATTT----ATAGTAAC---ATATCAG-------------------AATGtcatt---tgattattttcattgtCATTATTCTCACcaggaaa------aataaaaccagaattgaaggtgagga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     94406 312 -   201088 ----------------------------------------------------------------------AAGCTCT-AAGCAGAATATTACTATTTTCG-AAGCACACG---------------Aaagcctttttctt------tttcttc--gccaTTCAAATTTATCGCTTTTT-----ATGATTCTgcacaaa--gaaa--aaagttttgagtG----AAGGGGAGTGCTACGaatggaatttgaaaaattgagaat-------------gaaaactggaaattctgGTCATTCATTTGTTACTACATACTTTATAAAATTTGACTCGTGACTC----CAAGTATCTCAATATCAA-------------------AATgacatttgat--ttttcattattctctTCCTCCGTCTCTGAGAACAATGAAATAAAACCAgaattgaaagtgagga
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3134775 318 +  4147112 ----------------AAATGAGAGacggaa--aaa-----aggagaaaaacgaCATGGGTGACATA-AAATGCTCC-AAGCAAAATATTACTA-CTTCG-AGGggca----------------------ctttttcct------cttccttgggctattcaaattcattcattttt-----caagtcattca-aaa--aaag--taagacTGAAGTA----TGGGAAGAATTTGtaaattggaatttcaaaattcag------------------aaactggAA----------------TGTCACT-----TTATATACAAT---ACTCGTGACTC----GTACTACCTAGATATCAG-------------------AATgacatttgattatttccaTTATTCTCATTGAAGGTT------AAGACTAACATAAAACTGGAATTGGAGGTGAGGA
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold17934   279940 774 +   591668 I

a score=344637.000000
s ce10.chrX              4879507 613 + 17718866  
s cb4.chrX              10224599 808 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1765284 641 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     94718 632 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3135093 624 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   280714 599 +   591668  
i caeJap4.Scaffold17934 I 774 I 3315

a score=7574.000000
s ce10.chrX              4880120 10 + 17718866 TGAGTGTGAA
s cb4.chrX              10225407  9 + 21540570 -GAGtgagaa
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   1765925  9 -  4500979 -GAGTGAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     95350  9 -   201088 -Gagtgagaa
i caeSp111.Scaffold409  C 0 I 44
s caePb3.Scfld02_0       3135717  9 +  4147112 -gagtgagaa
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17934   281313 3315 +   591668 I

a score=-4126.000000
s ce10.chrX              4880130 19 + 17718866 CATTTTTTTTGCTTCATAC-----------------------------
s caeRem4.Crem_Contig0   1765934 43 -  4500979 -----ATTGGAATTGAGATGGGTGGAAGTGGGTGAAGGTGGTCTATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3135747 15 +  4147112 ----------------TATGTCTTGAGGTGT-----------------
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10225416 34 + 21540570 I
e caeSp111.Scaffold409     95359 44 -   201088 I

a score=-444.000000
s ce10.chrX              4880149 2 + 17718866 AC
s caeRem4.Crem_Contig0   1765977 1 -  4500979 A-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     95403 2 -   201088 AC
i caeSp111.Scaffold409  I 44 C 0
s caePb3.Scfld02_0       3135762 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10225416 34 + 21540570 I

a score=56380.000000
s ce10.chrX              4880151  96 + 17718866 TGTGTTGACGGAAATGCGA-AATAAGTGGTTTAGATGTGATCT----GTCTTGAC-----------TGTTCTTGTGACCATTGTTGG--AT-GGCACTTGACTTACGAACAA------TAT
s cb4.chrX              10225450 109 + 21540570 TGTGTTGACGGAAATGAGA-AATAAGTGGTTTGTCTGTGATCTTATATTCTTGACTTTTAGGGTGGTGTTCT--TGACCATTGTTGGCAAT-GACACTTGGCTTACGAACAA------T--
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   1765978  98 -  4500979 -GTGTTGACGGAAATGACA-AATAAGTGGTTTGTCTGTGATCT--TATTCTTGAC-----------TATTCT--TGACCATTGTTGGAAATAGATACTTGACTTATGAACAA------TGT
i caeRem4.Crem_Contig0  C 0 I 299
s caeSp111.Scaffold409     95405  98 -   201088 TGTGTTGACGGAAATGAGATAATAAGTGGTTTGTCTGTGATCT--T-TTCTTGAC-----------TGTTCT--TGACCATTGTTGGCAAT-GGCACTTGACTTACGAACAA------TGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3135764 104 +  4147112 CGTGTTGacggaaatgagaaaataagtGGTTTGTCTGTGATCT--T-TTCTTGAA-----------TGTTCT--TGACCATTGTTGGCATG-GCCACTTGACTTAGGAACAATATATTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I

a score=3050.000000
s ce10.chrX              4880247 16 + 17718866 GGCGGGAAA-TTGGTTT
s cb4.chrX              10225559 15 + 21540570 -GC-GAAACTTTGGTTT
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold409     95503 12 -   201088 ----GAAAC-TTGGTTT
i caeSp111.Scaffold409  C 0 I 246
s caePb3.Scfld02_0       3135868 12 +  4147112 ----GAAAC-TTGGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-11262.000000
s ce10.chrX              4880263 217 + 17718866 ---CGAGAACTTATGCGGGAAAACTATGTAT-ACTGAAGAATAGAACTCGAGGC---CATTTAATAGCATTTGAACAAA-----------TGAAAA-------ATTGAAAACACAAGTGGTGT--TACAATTTGGATCGATTTGAAATAATATTTTAAAAAATGCCAA--AAACAGTTTTTACCAGGGAGTGGTCAAAATTTTGAGAATTTCTTCGGCTTGAAACTAGGGAAAGTGGAAAGCTGAG
s cb4.chrX              10225578 203 + 21540570 ---TGAGAGgt-----tgaaaatttagttttcatTGAAGGATGGG---TGGGAC---AAACTTG-AGATTGGAAACAAAACACAGTGCTTCGGACAACTTTTTATT----ACTCAAGTATCGTTGTTGAATTGGGAAGaataaggaa-aagaagaaaaggaacgTTAATGGGActgtttttct----------------ttctaaaaatagcaga-----taaacaa--gaaaatgaagaagaaag
i cb4.chrX              I 4 I 254
s caePb3.Scfld02_0       3135880 151 +  4147112 TCATCAGGGATGAg--cgtaaaattattttt--ttacggAATccg---taaaacgtaaaatttacggattg----caaaac---------cgtaaa-------att----ccgtaaaaaccgt-------------aaaattcgtaa-aacTTTGTATATACCGCTGA--AAACcgtaatttt----------------ttccgaaaaacgtAT--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-1161.000000
s ce10.chrX              4880480 250 + 17718866 TTCATAAGCTGGAATAATTATATACGTAACAATGTTTACGGCAGATGTTAATGAACTGATCATACTGACGACAA----CGAA---AATCTGAGTTTCCCTATTTCTGCTGGGGACATCGAAATATCCGATAAATTACGTCTA-ACACTCTAGCAGAGTAACCCATGGTTTTTCAACTTTCTAAAAAAAACATTTTGTCCGTTGCCCAGACAGTAAACGTTGTT-----GACGTATTTGTGTATAAAAGTTAGAGCAGAATAAT
s caePb3.Scfld02_0       3136031 213 +  4147112 TTTATAGTC-----AAATCAAATAC--AACCACGTC-----CAGCCAATaaaaaaaCGGTCAATTAGTCAAAAATTGCCGAATAGAATCCAAGC-------TTTCTACTGAG--CTTCAacaatttcg--agattttttctgCACACACATGTGG-------Cgcggatt----------taaaaaaaaaatggagt----------gaaattaaaatttatttatcaGCCATAAgttgttctcaaaaataggGGGGAACAAC
i caePb3.Scfld02_0      C 0 I 199
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10225781 254 + 21540570 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=0.000000
s ce10.chrX              4880730 25 + 17718866 GTTTTTGAAAAACACTCAGCATCTG
e caePb3.Scfld02_0       3136244 199 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10225781 254 + 21540570 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=831.000000
s ce10.chrX              4880755 50 + 17718866 AGAATTTTTTTTTTGTGATTACCAAT---TTTCAACTATCAATTTTTGGTTGA
s cb4.chrX              10226035 52 + 21540570 agaatcttttttct-tgtttttttatttatttcaatgATATACATTCTGATGA
i cb4.chrX              I 254 I 29
e caePb3.Scfld02_0       3136244 199 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=0.000000
s ce10.chrX              4880805 25 + 17718866 GTTTTTAGTTCACTGCTGCAAGTCt
e caePb3.Scfld02_0       3136244 199 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10226087 29 + 21540570 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=864.000000
s ce10.chrX              4880830 76 + 17718866 aaaatattaaaatttgagtataaaataaaattataaCTCAACACTATTGGAAACTTTTTT--TTTCTTTCACATTTGG
s cb4.chrX              10226116 71 + 21540570 aaaaaaccaaaattacaATCGAGATTAGAATCATGCTTCTACA-------AAACCGCGTTGGCTTTTTACAAAGTTGT
i cb4.chrX              I 29 C 0
e caePb3.Scfld02_0       3136244 199 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-5451.000000
s ce10.chrX              4880906 170 + 17718866 -------------GAAATGTTAGATAACTAAGTTAAACAATTATTACTGCTCGCAA-------AACATTTTATTATTTGacccagacgcaaaatgtttcaattttaacgacaaaaatacggtatccggtttctgcacgataaatttgtgttaaatacaaaaaggtgt----------gcacctttgaaga--gtactgtaaa
s cb4.chrX              10226187 143 + 21540570 ----------AAAATAATTGGTGAATAATAGAATAGAAACTTTAATTTATTTGGTA-------AActctt----------------------------gaatttcagaccaattgatgaa---------ttctg-----taattttgttCTAGACGTACAAAACCGTCAGTGAAtggaaacttttagaaaaaataccgaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3136443 173 +  4147112 GAAAAGTTAGAATAAAACTtgagatgaaaacaaaacacgattcgaattttttattactCAAGTATCGCtt------------caaatggaaaagaaaagaacttgAGAGAAGGAAATAGAG-ATAATGGgtctg-----ttttttatttttagaaaaaaaaaacagt-------tgaggACTTTCACATA----ACTGGAAA
i caePb3.Scfld02_0      I 199 I 184
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=91.000000
s ce10.chrX              4881076 1 + 17718866 t
s cb4.chrX              10226330 1 + 21540570 t
i cb4.chrX              C 0 I 71
e caePb3.Scfld02_0       3136616 184 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=0.000000
s ce10.chrX              4881077 101 + 17718866 tctgaaacgcgtttttgtgggtgtttctttgatGAAATTGAACTATTTATTTTTTGAACTAATTAAATTTAGCATGTTTTTTTTTTCATTTGCCCTATCAT
e caePb3.Scfld02_0       3136616 184 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10226331  71 + 21540570 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-227.000000
s ce10.chrX              4881178 80 + 17718866 AAGCTAAAAAAGAAATTAGGACATTTTTTGTGGACCCACAAAAAAAAGCTAACAAACATA-GGGTGCT---------------ACTGAATTATGTG
s cb4.chrX              10226402 83 + 21540570 AGAACAAAACAGAA---TGGGCATTATCT----------AAAAAACCGTCTCCCGGCATACGGGCTCTTTTCTAGACCAGCTCAATCAATCATGTA
i cb4.chrX              I 71 C 0
e caePb3.Scfld02_0       3136616 184 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-472.000000
s ce10.chrX              4881258 11 + 17718866 CTTCATCT--AAA
s cb4.chrX              10226485  9 + 21540570 ----AATTGCCTA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3136800 11 +  4147112 CTTCAGCT--CTA
i caePb3.Scfld02_0      I 184 I 4
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     95515 246 -   201088 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=-2954.000000
s ce10.chrX              4881269 33 + 17718866 --------TCCTATTGTTTATA-----AAAACTGCACACCGATAGG
s cb4.chrX              10226494 32 + 21540570 TTCATTGTTTATTGTCTTTGCAG----ATGAAAGCA----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     95761 33 -   201088 --------tctttttgtttgcaGTGTTCTTATGACAA-----TGAG
i caeSp111.Scaffold409  I 246 C 0
s caePb3.Scfld02_0       3136815 33 +  4147112 --------TCCTTTTGTTTGTA-----TTCACCACAACCTTTCGGG
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeRem4.Crem_Contig0   1766076 299 -  4500979 I

a score=87783.000000
s ce10.chrX              4881302 711 + 17718866  
s cb4.chrX              10226526 730 + 21540570  
i cb4.chrX              C 0 I 161
s caeRem4.Crem_Contig0   1766375 750 -  4500979  
i caeRem4.Crem_Contig0  I 299 C 0
s caeSp111.Scaffold409     95794 673 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3136848 674 +  4147112  
i caePb3.Scfld02_0      C 0 I 284
e caeJap4.Scaffold17934   281313 3315 +   591668 I

a score=-1481.000000
s ce10.chrX              4882013 30 + 17718866 GAGGGAATCATATATATTTTGAGTAGTCTT
s caeRem4.Crem_Contig0   1767125  7 -  4500979 GAAGGGa-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     96467 29 -   201088 GAATAAATTGATTAT-TTATGGGTATTTTT
i caeSp111.Scaffold409  C 0 I 207
e caePb3.Scfld02_0       3137522 284 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10227256 161 + 21540570 I

a score=246.000000
s ce10.chrX              4882043 53 + 17718866 CCACAGTTGGATAAAAATAGACATGAAGCAGTTTAACAAATGCTTATTATCAA
s caeRem4.Crem_Contig0   1767132 33 -  4500979 ------------aaaaaaCGGTTTGTAATGGTtcaa--------tattataaa
i caeRem4.Crem_Contig0  C 0 I 33
e caePb3.Scfld02_0       3137522 284 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10227256 161 + 21540570 I
e caeSp111.Scaffold409     96496 207 -   201088 I

a score=0.000000
s ce10.chrX              4882096 67 + 17718866 AGAAGCCGAAAAGGTTGGGAATACCATAACAAATCATTCTGGGAGAAAAAGAAGATGATGTGACTTT
e caePb3.Scfld02_0       3137522 284 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10227256 161 + 21540570 I
e caeSp111.Scaffold409     96496 207 -   201088 I
e caeRem4.Crem_Contig0   1767165 33 -  4500979 I

a score=-1594.000000
s ce10.chrX              4882163 423 + 17718866 CATATAATAGGCAAATATTTTGGGGTAGTGGGAGTAGGAAAAAATGATCAAAATTAATAATATGGTGATAAAATGATCAATGATTATAGTCAAAAAGCGCCAATTGCTCAGTTTTCGCCTATCATCGTTTCACATTTAATT-----TGATGTTCTAGTTGAGTTGTAATTATTTT---------ACATGCGCCATAGCTTCAAACTTCTGAGAAGACTAAAATTTGTTGAAAGGCTTATTATAGTGTTACAATTAAATATACGTATTTTTAGCTTATTTCAAATTATTATTCTTAATTTTCCAAAATTATATTGGTT---TTTCTAA--ATTATTTTGGATTTTTCACCTTGAGTGTTTAGAAAAGTGATCATAGGTAAT-------------TTTAGATGTCG-------------AACTCAAAACAATTCTAAAAGCATTATACTTTAATTTTTTAAAAATTTTCC
s caeRem4.Crem_Contig0   1767198 385 -  4500979 catctaat-------taatttg----------------------------aaatt----------tcgcggaatggtc-----tcgtagttgaaaaagatcaaataccgcattttcgagctttgcaggtctaaaaataaatgcaaataatgtttt--tcgcttcgggaccattttgaacaaattagatgcgcc-----tttaaagtcatgcggcgc----agtgtcgtgaat------ttataatattaccctttaatata----tttttagaT--------GTCATTATT--TGATTGTTCATTAT-ATAATGATTCACTTTATAATAATTACTGTACCTCAAAGACACCGACTTTCTTGAGAAGAGACCTGAAGTGATAGAGTGTGTCTGATTAATATCTtggtgaagaaaagaaaactcaacAAATTATGGATTGCATCAATCATCAATTGTCTGACAGTATGC-
i caeRem4.Crem_Contig0  I 33 C 0
e caePb3.Scfld02_0       3137522 284 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e cb4.chrX              10227256 161 + 21540570 I
e caeSp111.Scaffold409     96496 207 -   201088 I

a score=-2558.000000
s ce10.chrX              4882586 89 + 17718866 TTATGTTTGAAATTCAT------ACTTTAAAAT--TAATGTTTGCCAAAAAGCTTCTATGTGATTTACAAGTACAGGAATATTTTTACAATGTTAGT
s cb4.chrX              10227417 94 + 21540570 TTGTGATTGATGTTCAGgcaatcattcaaaaatagcaaTGTTATACTTAAAGGTTAAATAAAACAGAAAGGTTTATGGATGTGTTTGCTAAGGT---
i cb4.chrX              I 161 C 0
s caeRem4.Crem_Contig0   1767583 38 -  4500979 -----------------------GGtttaaaacaacaa------atttaa---------------------------GGTGTGTTTGCTAAGTT---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3137522 284 +  4147112 I
e caeJap4.Scaffold17934   281313 3315 +   591668 I
e caeSp111.Scaffold409     96496 207 -   201088 I

a score=2902.000000
s ce10.chrX              4882675 34 + 17718866 GAATACAACCA--AAAACATTTTTACAAG------ATGGATA
s cb4.chrX              10227511 28 + 21540570 ---TAC---------AGCAGAAAAAACTGGTAA--ATGAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1767621 39 -  4500979 ---TACAACgaggaaaacagaaaacattggaaaagaTGAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     96703 36 -   201088 GATTACAACGATGAAAACATAGAAGAATG------ATGAATA
i caeSp111.Scaffold409  I 207 C 0
s caePb3.Scfld02_0       3137806 29 +  4147112 GATTACAACGAACAAAACAT-------TG------ATGAATA
i caePb3.Scfld02_0      I 284 C 0
e caeJap4.Scaffold17934   281313 3315 +   591668 I

a score=309239.000000
s ce10.chrX              4882709 944 + 17718866  
s cb4.chrX              10227539 968 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1767660 926 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     96739 928 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3137835 963 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   284628 930 +   591668  
i caeJap4.Scaffold17934 I 3315 I 56

a score=15544.000000
s ce10.chrX              4883653 49 + 17718866 AGATAGAAATATGAATTGACG------TTCCAATGATAACAGAATGAAACGCAGG
s cb4.chrX              10228507 47 + 21540570 AGATTGAAATATGACTTGACG------TCCTTTCCATTAACTGATGAA--GCAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1768586 48 -  4500979 GGAAAGAAATATGACTTGACG------TTCAGCTGATTGCGGAATGGA-TGCAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     97667 44 -   201088 aaatagaaatatgACTTGGCG------TACAGCTGCTTTCGGAA-----TGCAGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3138798 52 +  4147112 aaaaagaaatatgacTTGACGAATTGCTACATCTGATTGCGGAATG---TGTAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   285558 56 +   591668 I

a score=37998.000000
s ce10.chrX              4883702 129 + 17718866 TCC---TTGTTTCCATTTTTTCAACTGATGCCTTGTG--TTCGACCGGTCCCGATTATATGAATCAC--------------GCG--GACAATT---------GGCAAACAATGA---AGTCGAAAAAAGCTGGTT---CAGTGTTCGGAAAAGAT--------------TTGACCCCTG
s cb4.chrX              10228554 134 + 21540570 TCC---TTGTC--------TTTGAATGATGTTCTACCT-TTTGACCGGGCCCGAT--TATGAGTCAC--------------ACATGGACGGTT---------GGCAAACAAAGG---TGAACAAAAAAGCAGGTTCAGCAGTGTTCGCAAAGAACTCAGTGTG-----TTTGACCTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1768634 128 -  4500979 TCC---TTGTCTCA----TTTTGAATGATGTTCTACCT-TTCCATCGGGCCCGAT--TATGAGTCAC--------------ATAGGGCCAATT---------GGCAAacaaaga---aga--caaaaagCAGGTT---Cagtgttcgaaaaaaaa-----gtg-----tttgacCTGTG
i caeRem4.Crem_Contig0  C 0 I 183
s caeSp111.Scaffold409     97711 132 -   201088 TCCTCTTTGTCTCA----TTC-GAATGatgttctttctctttgaCCGTTCCCGAT--TATGAGTCAC--------------ACT--ACCAATT---------GGcaaacaaaaattggaa--gaaaaagcagGTT---Caaccattgaaaaaagt-----gtg-----gTTGACCTGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3138850 128 +  4147112 ACC---TTGTCTCA----TTCTGAATGATGTTCTACCT-TTTGACCGTTCCCGCT--TATGAGTCAC--------------ATC--GACAAAT---------GACAAacaaaga---gaa--ggaaaagcaggtt---cagtgttcaaaaaaagc---aagtg-----TTTGACCTGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   285614 147 +   591668 -----TTCGtcttttcactttt---tgatgTTCTACCT-TTTGAGTGGACCCGAT--AGTGAGTCATCGAGCAGAATAAGAACT--ACCAATTGTAACGGGGGGCACAGAGTGG--------GAACAAgtacaat---taaaaataaaacaatat-----gtACAAATTTCTACCG---
i caeJap4.Scaffold17934 I 56 C 0

a score=-46417.000000
s ce10.chrX              4883831 171 + 17718866 AGTTGCACTTGT--------------CGATGGCTATGAGACAAGAAAAATGATGTCATTTTGAGCATTTTTAAAGTGCAAAGTATGAATAAAACGTTCTAAAA----AAATTATCAGAAT-----------CAACTTTCATTAAAAGGTATTTTTTAAATGT---CACAAGCGACGCCAAA------------------------------ATAGAATC----------------------------------AATTAGATTCAAAA
s cb4.chrX              10228688  83 + 21540570 AGCTGT-------------------------------------------------------------TTT----GAGTGGTCT-AAACTTGAGAG-----GAa----acg-------------------------------------tcattttttgaagtt-----cgaaCAAT------------------------------------CTAGGCTT-------------------------------GTTGATTTTATTcattc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409     97843 180 -   201088 AGTTGC-------------------------------------------------------------TTGTTAAGAGCGGGTC--AAATATAGTG--ACAAAACCCGACGTCATACGGAT-----------AAACACT------AATAGATTTTGGGGAATT-----GGAGGGACTAGAAAAGTTGCTTTATCACAAATTCagctttttcaataaacttcaaacattattttcaaagaatcgAACTATGattaaataaaattcattt
i caeSp111.Scaffold409  C 0 I 100
s caePb3.Scfld02_0       3138978  60 +  4147112 AGTTGC-------------------------------------------------------------TTGTTAGGAGTGGAAC-TAAATATAGTGGAACAGAA----ACGTCATATGG---------------------------------------------------------------------------------------------ATAAACTT------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   285761 152 +   591668 GGTCCCGCGTGTTTTGACGTgcaccacggtgtccagg------------------------------atttgaaaagtgggcg--gagccgagaa-----aac----gcgcccactgtattttttcgcgtgaaattcaaattttgtcgcatttttttaaatgtttttcgggaaaaaaaagc------------------------------ataaattc-------------------------------ttaa-------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-87.000000
s ce10.chrX              4884002 6 + 17718866 AATATC
s caeJap4.Scaffold17934   285913 6 +   591668 tttttc
i caeJap4.Scaffold17934 C 0 I 78
e caePb3.Scfld02_0       3139038 0 +  4147112 C
e cb4.chrX              10228771 0 + 21540570 C
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-5608.000000
s ce10.chrX              4884008 107 + 17718866 AACAAAGTAACCAGGTTGGTTTTCAAAAACATTGACAATTTTCCTTGGTTTCTTTTTTAGAATATGATTTTTTTAATTTTTGCTCTTGAAGCT-----CTAGA-----AAGAGTAAA
s cb4.chrX              10228771  42 + 21540570 ------------------------------attgaaaat-----------------------tatcaagTTGAAACAGTTT-----------------ATACA-----ATGGTTCAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3139038  64 +  4147112 -------------------------GGAGCATTGA----------------------------ATCGTGTTGTTGGTGTTTGTTTGTGGATAATTGAAATACACGGATATGGAGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   285919  78 +   591668 I
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-12236.000000
s ce10.chrX              4884115 92 + 17718866 AACATTGA--GAAATATCTGTTTGG---TCTTTGGAAAAACTCAAATAAGCAGTTGAAAGAAGAAAAATACAATATTAAAACTTTACAAAA----AAATTT
s cb4.chrX              10228813 81 + 21540570 AGTTTTCATTGTGAtacagaatt------ct-----gaaaatacaataATCAGGAAACACGATGAATCTGTAA-TTTGAGact----cgaa----aaatta
i cb4.chrX              C 0 I 52
s caePb3.Scfld02_0       3139102 78 +  4147112 AACTCGTAATGAGATATGAGATTGG----CT------AGAATTCAAAACTGAGGTTA-ACTAGGCA--TGTGA-ACCGACAC-----CAAA----AAGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   285997 70 +   591668 accatttc--gaaataatcgttttgagtttt---------------------------ttggtgtttttgcag-gataaatctttacgaaaatcgaagtt-
i caeJap4.Scaffold17934 I 78 C 0
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-4691.000000
s ce10.chrX              4884207 74 + 17718866 TGAAAAACTTTAGTGGGCTGTCTATAATGATGG--AACTTTGGACTTCACATATCATATTTTTCGAGGTTGACTTC
s caePb3.Scfld02_0       3139180 60 +  4147112 TCTAAAGCATC------CTGGCCATTCTGAGGGGAAAAATTAGATGAAACA----ATACTCCTGGAAGCT------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286067 19 +   591668 ------------------------------tgggaaattttatg-----------gtatt----------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10228894 52 + 21540570 I
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-7714.000000
s ce10.chrX              4884281 74 + 17718866 AAATTATTCAACAATTTTTACATATATTCTACTAATTTTGCCTTACTTGCACAGAAATCGTGTGTATTTGAACA-
s cb4.chrX              10228946 49 + 21540570 aattatctcaatttctataaaagatatc-------------------------gaaaatgtgtatTAGAGAAAA-
i cb4.chrX              I 52 C 0
s caePb3.Scfld02_0       3139240 27 +  4147112 AAACCTCTgaacctttttgaa-----------------------------------------------acaaca-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286086 51 +   591668 aaaagatacaat-------acatacattttacaaag-----------------aaaaacaggttttactgaaata
i caeJap4.Scaffold17934 C 0 I 16
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-2241.000000
s ce10.chrX              4884355 37 + 17718866 TT-ATTGTAGTTCATACATGCTGCTATACTCCAGATTT
s cb4.chrX              10228995 28 + 21540570 TTCGGTATGGTCTATAATTGCT----------AGATTA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3139267  6 +  4147112 tt--------------------------------ACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   286137 16 +   591668 I
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-8578.000000
s ce10.chrX              4884392 61 + 17718866 -TTTAAAAAGG---TAACCTATTTTG------------TAAGATTTTGAAATT-------TACCAAAACTTTGAC-TGAATGTTT
s cb4.chrX              10229023 71 + 21540570 -CGAGAAAATCAACGGaactatttttatattttcaacataaaaattcaa------------atcaaaatattgGA-CAACAGTTA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3139273 50 +  4147112 -CTAGATAATGCTCTAAACTAAGTTT----------CACAAAGGT-----------------------GACTGGC-CGTGAGatc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286153 60 +   591668 tttaaaaaaaa-------------------------tgcgagagtcgaaaaatgcgcaagcaccaaaagtgtgccatgcaagttt
i caeJap4.Scaffold17934 I 16 I 85
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=-2151.000000
s ce10.chrX              4884453 40 + 17718866 TGAAAA-------------------TTCTATAAAATGGTATCCAATGTAAAAAATCGAA
s cb4.chrX              10229094 54 + 21540570 TAAAAAGTCGGAATACTCGGAGCATTTC-----ACCGATtttcactttaaaaaatccaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3139323 17 +  4147112 cagaaa-----------------------------------------caaaaaatgaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   286213 85 +   591668 I
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=0.000000
s ce10.chrX              4884493 13 + 17718866 AAATCTTGAGAAT
e caePb3.Scfld02_0       3139340  0 +  4147112 C
e caeJap4.Scaffold17934   286213 85 +   591668 I
e cb4.chrX              10229148  0 + 21540570 C
e caeSp111.Scaffold409     98023 100 -   201088 I
e caeRem4.Crem_Contig0   1768762 183 -  4500979 I

a score=712.000000
s ce10.chrX              4884506 13 + 17718866 CAACAAATTATTG
s caeRem4.Crem_Contig0   1768945 13 -  4500979 caaaaaaccagtG
i caeRem4.Crem_Contig0  I 183 C 0
s caeSp111.Scaffold409     98123 13 -   201088 caaaaaattgaag
i caeSp111.Scaffold409  I 100 C 0
s caePb3.Scfld02_0       3139340  1 +  4147112 ------------g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   286213 85 +   591668 I
e cb4.chrX              10229148  0 + 21540570 C

a score=171506.000000
s ce10.chrX              4884519 269 + 17718866 ACAAGTCTGAA---GCTAATTGTGAAACACGAGAAGGCAC-GAGAAA--AGAG---------------CGTGCGGAAGTACT-----AGTTGCAAATTGAAGCGGAAAAGTAGGTCG--GTCGTCTGACG--CGTTCTAACCATCCAACTACATCTTGGCCTGTTTGCACTTAAGAAAAA----------CGTTGGAA-ATGGGTT---------GGTGAAGGTTGCATAATACAGTAAA-----TGGAAAGT-GA-TGGCAGACGA----------AGGAAAGCTCTT----AGGAACAAATTTGATTAGTGAATTAG----GCAATCAGTAGACC---------------------GAGAAGC
s cb4.chrX              10229148 300 + 21540570 -aaggtGTAAGAAGACTAATGATGAAATACGAGAAGGtac-gagaaa--aaagaagaaaaaaacggcgTGTGCGGAAGTACT-----AGTTGCAAATTGAAGCGGAAAAGTAGGTCGTCTTCGTCTGACG--CGTTCTAACCATCTACCCACATCC---CCTGTTTGCACTT----AAAA----------CGATGTGA-AAAGgttggaaaacggaaaagaagTTGCATAATACTGTACG-----AGGAGA---AAGTTGGAGataaggaaaa-g--agaaaagctCTTAGAGAGGAACAGATTTGATTAGCGAATTAG----GCAATCAGTAGACC---------------------GAAAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1768958 290 -  4500979 ACAGGTGTGAG------GCTAATGAAATACGAGAAGGTAC-GAGAGG--AGAG----------CGTAGCGTGCGGAAGTACT-----AGTTGCAAATTGAAGCGGAAAAGTAGGTCGTCTTCGTCAGACG--CGTTCTAACCATCTAACCACTTTTTGGCCTGTTTGCACTTaagaaaaa----------cattgaag-aTAGGTT-------GGAAGAAAGGTTGCATAATACAGTGAG-----AAGAAAGT-AACtggaaaatgaggagaa-gatAGAAAAGCTCTT----AGGAACAGATTTGATTAGTGAATTAG----GCAATCAGTAGACC-----GC-----------ATAGAAATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98136 314 -   201088 acaGGTGTGAT---GCTAATGATGAAATACGAGAAGGTACTGAGGGGCCAAAG----------GGTGGCGTGCGGAAGTACT-----AGTTGCAAATTGAAGCGGAAAAGTAGGTCG---TTGTCTGACG--CGTTCTAACCATCTAACAACATCTTCGCTTATTTGCACTTAAGAAAAA----------CGTTGGAG-ATAGGTT---------GAAAAGGGTTGCATAATACagtaagaagaagagaaagtggGTTGGCATAtcaaatgaatgagagaaaagcTCTT----AGGAACAGATTTGATTAGTGAATTAG----GCAATCAGGCGACcaagaagtcaaaaaaagagatgaagatGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3139341 300 +  4147112 acaggTGTGAG---GCTAATGATGAAATACGAGAAGGTAC-GAAGGGCAAGAG----------GGTAGCGTGCGGAAGTACT-----AGTTGCAAATTGAAGCGGAAAAGTAGGTCG---TTGTCTGACG--CGTTCTAACCATCTAACAACATCTTCGCCTGTTTGCACTTAAGAAAAA----------CGTTGGAG-ATAGGTT--------GGAAAATGGTTGCATAATACAGTACG-----GAGAAAGT-GGCTGGCAGATTAGAAGAACGAGAGAAAAGCTCTT----AGGAACAGATTTGATTAGTGAATTAG----GCAATCAGTAGACCGAAAAGC--------AAGATGAAGATGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286298 275 +   591668 GCAGGTGCAAA---AGTATTGCTGTAACACGAGAAGGTTT-G-------ATTT----------GGTTGCGTGAGGAGGAACCAGTTGAGTTGCAAATGGAAACGAAAAAGTAGGTCG---TTG---GACGTTCGTTCG---CATTT----GCACTTACACTTATGtacaattagaaaaaaaaagcgtaatTGTTGGGACGTGAGTT---------GATAAAGGTTGCATAAT-------G-----GCGAAAGT-TGCGGATAGA----------AAGAAGGAAACTTTT----AGGAACAGATTTGATTAGCGAATTAGGCAAGCAATCAGCAGATC--------------------TGATAAGC
i caeJap4.Scaffold17934 I 85 I 87

a score=-3040.000000
s ce10.chrX              4884788 49 + 17718866 ATGAA--GAGATAC------------------TGATAATGTATATAGAGG----AA---AAAAACTACCACCCATA
s cb4.chrX              10229448 55 + 21540570 ATGAA--AGGAGACAGAAGGATTGACT--GGGTGgtagaacaaaaaaagct---gA---GTGAG-----------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769248 58 -  4500979 ATAAG--AAGATGTAGGCGGAAACTTC--ACACGGCATTACATGggtggtttcaga---aaaag-----------a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98450 56 -   201088 ATGAG--ATGATAAAGGAGAAAACATCTGACGCGGCAGCGCATGGGtggt----ag---aaaaa-----------a
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3139641 61 +  4147112 ATGGGAAATGATAAAAGAGAAAGCGTCTCATACGACATCACATGGGTGGT----gggataaaaa-----------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   286573 87 +   591668 I

a score=169703.000000
s ce10.chrX              4884837 291 + 17718866 TGAAATGT-TAAAAGATTAAGCGAC----AATGGTCAAAAAGAGA--AAAAAGGGGGATCAGATGAATTAATAGAGATGGTCT-CCGA------------------GACACAAGCCGAGCAAGATAGTTGACGCACGGAGGA-------------CGGGGTTGTGCAAATAGG---------TAGATAAGCGGTGTAGGTGATGACC-------------TCCCTCGCAAGTCTCACCATAAAAGACGACTCAACGGCTTTTTGTCGGAGACTGTTCTGGC--------GGCTAGAGACGGGCGAAAG-----AAAGAGAAATG--ATCGAAAGAAGCGGCTTGATATGGAATCAAACATTCGTGCG
s cb4.chrX              10229503 300 + 21540570 TGCAACTTAAAAAGAGACAaagaccgaaaaaaaagtga---------agatgATGGGATCAGATGAATTAGGAGTGTTGGTGCTACGATCTCCGAGTGAGAGAGACG--ACAAGCTGAGCAAGATAATTGAAGCACGGAGACGC-----------CGGGGTTGTGCAAACAGGCATTTTGGATAGATAAGCGGTGTAGGTGATGACCTCCCATCTTTCTGTCTCTCACA-----CTCCATAAAAGAC--CTGGGGAGCTTTTTGTCTGAGACCG------------------CGC------------G-----GAAGAAAATTT--AGCGAGA-AAGCGGCTTGATATGGAATCAAACACTCGTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769306 277 -  4500979 tgCAACTT-GAGAGAAACATGCGCC----AATAACCAA---------AAAAGAGGGGATCAGATGAATTAGGAGTG-CGGTCCTCCGA------------------G--ACAAGCTCAGCAAGATAGTTGACGCACGGA----------------CGGGGTTGTGCAAATAGG---------TAGATAAGCGGTGTAGGTGATGACCTC--------CTATCTCTCACAAGTCTCCCCATAAAAGA---CTGTACAGCTTTTTGTCGGAGACTGTTTCGGC--------CGCCGCTggga---gaaag-----aaagagaaatg--agcGAGA-AAGCGGCTTGATATGGAATCAAACATTCGTGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98506 292 -   201088 tgaaactt-gaAAGGAACACGCGAC----AA-AGccaaaaaaggaggaaagaGAGGGATCAGATTAATTAAGAGCG-CGGTCT-CTGA------------------G--ACAAGCTAAGCAAGATAGTTGACGCACGGA----------------CGGGGTTGTGCAAATAGG---------TAGATAAGCGGTGTAGGTGATGACCTcccat----ctctctctcacaAGTCTCTCCATAAAAGA---CTGTACGGCTTTTTGTCTGAGACTGTTCAGCC-------GCACTGCGGACGAgcaagag-----aaagagaaatg--agcGAGA-AAGAGTCTTGATATGGAATCAAACATTCGTGCG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3139702 274 +  4147112 tgaaactt-gaagAGAACAAGCGac----aataaccaaaa-------aaaagaagggatcAGATGAATTAAGAGTG-CGGTCTCCCAA------------------G--ACAAGCTGAGCAAGATAGTTGACGCACGGA----------------CGGGGTTGTGCAAATAGG---------TAGATAAGCGGTGTAGGTGATGACCTCCCA--------TCTCCCACAAGTCTCTCCATAAAAGA---CAGTACGGCTTTTTGTCTGAGACCGCTGAGGA-------AAAccg---------aaaag-----aaagagaaatg--agcGAAA-GAGCGGCTTGATATGGAATCAAACATTCGTGCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286660 303 +   591668 TAAAAGAA-TGAAAGAACAAGCGAA----AATGACC-----------AAAGAAGGGGATCAGATGCATTTGGAGAG-TGGCCGCGGGA------------------A--ACAAACCGAGCAATATAGTTGACgcacggacggacggacggacggacggggTTGTGCAAATAGG---------TAGATAAGAGATGTAGACGAtgacctctct-----ctctctctc-----tttctcactAAAAGA---CGGTGC-GCTTTTTGTCT---ATTTTCCCGGGCAAGCCAACCccaaaagaaatgaaaaggcGGAAAAGGAGaatgacaacaaaa-aaaaagattgataTAGAATCAAACATTCGTGCG
i caeJap4.Scaffold17934 I 87 I 24

a score=1703.000000
s ce10.chrX              4885128 33 + 17718866 TTCCATTCC-------TTCC--AACTCTGTCTCCTCACC-----TCG
s cb4.chrX              10229803 42 + 21540570 GTGGT-GCGGGCGCGTTTCAAAAACTCTGTCGCCATCCG----ATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769583 31 -  4500979 TTCAT-TCG-------TTTCAAAACTCTGTCGCCatccg--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98798 39 -   201088 TTCAATTCG-------TTTCAAAACTCTGTCCATTCCTc-catctct
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3139976 39 +  4147112 TTCAA-TCG-------TTTCAAAACTCTGTCGctatctctcttttcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   286963 24 +   591668 I

a score=15374.000000
s ce10.chrX              4885161 106 + 17718866 TTTTTTTTTGGGTTC-----TTTTTGAAGTACGGTTTT--TATTGCG----TTTGTGGAAATCGAACC--GATTGAGGGAGAGT-------GGGGATGGG--------------GATAGAGAGCAAGGTCGTT------GAGGAA-T
s cb4.chrX              10229845 111 + 21540570 ACTTATTCT---CTCGCGATTTTCTGAAGTACGGTTTTTATTTTAGG-GACAGAGTGGAAATCGAACC--GT-----CGGAAAT-------GCGAAGAAGT-------------GACTGCGAGCAAGGCCGTTCG----GTGGAA-T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769614 101 -  4500979 ---tttttt---ctc-----tttttgaagtacggttt---ttttGGG----AAAGTGGAAATCGAACC--GA-----AGGAAATaggagaggagaagaa---------------gatagaGAGCAAGGTCGTTTG----GT-AAT-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98837 105 -   201088 ctttctttt---ctt-----ttttggaagtaCGGTTTT--TATTGGG----AAAGTGGAAATTGAACT--Ga-----gggaaat-------ggaaaaagga--------------attgcGAGCAAGGTCACCCGGAGAGAGACTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140015 118 +  4147112 cattttttc---atc-----attttggagTACAGTTTT--TATTGggggaaaaagtggaaattgaaCCGAGA-----GGAGAAT-------GGGAACGGGATAGACTGAGAGAGGATTGCGAGCAAGGccatt------gagaat-t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   286987  78 +   591668 Gtttgtttcaaaact-----ttgTTCAAGTA-----TT--TACTGGC-----------------------GG-----AGGGAAG-------AGGCCTAG---------------AGCCAAGAGCAAGGTCATT------GACCAA-T
i caeJap4.Scaffold17934 I 24 I 120

a score=-21704.000000
s ce10.chrX              4885267 106 + 17718866 CAAATTGCTTCGTTCTCACAATATC-CATTGGCTACTCTCTTACACTAAATGA-CAACAACTCGAGTTTATAGGAA-------------------------------------------------------------AAAAACC---------------------TAAAGGATGTTGAGGTAATGTAGCT
s cb4.chrX              10229956  75 + 21540570 GGAATTACTTAGTTCTCATAGTAATCGAAGAACACAAGTagt---ttgcgaaa-aaaaaacccg-------------------------------------------------------------------------aagAATC-------------------------GGTT----------CG---GT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769715  39 -  4500979 GGAATGACTTGGTTCACACAGTATCTAAGAAACGAATGT-------------------------------------------------------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     98942 119 -   201088 GGAATTGATTGGTTCCCATACCATTGcaataattaattttgtgTATCACGAAG-AGTAAAACTAATTTCTCAC----------CTATGATTTAC-----------------------------TCAAATTGAAGGTtaagaaac---------------------caaaaacc----------cGAAAGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140133 177 +  4147112 gaaatgacTTGGTTCTCACAGTATCGCAGTAACTAATTTTATGTATcgcaaagaagaaaaaacgacttCTCACTCATGACAGACTCTAAATTACAATTGTTAGTTTGGTGGAACTTCAGAATTTCTAACTGAAG---AAGAAACGAGGACGTTGGAACAACTggataaaaatt----------cgaaagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   287065 120 +   591668 I

a score=-26826.000000
s ce10.chrX              4885373 75 + 17718866 GTAAAAATTGA------------------------TTTTTGCTTAAAAAATTGTT------GCTTTAAAAAATTTATAAATGGCAAGTCTACTAAACAAGTGTCA
s cb4.chrX              10230031 66 + 21540570 GTATAATTCCA------------------------TACCTAgcagaaaaattgttaaacGAAGATCGAAAGTTTCAta---------------gaacattttaaa
i cb4.chrX              C 0 I 178
s caeRem4.Crem_Contig0   1769754 31 -  4500979 --------------------------------------------GAAGTATCACAAGAttaagaaaaacagtttt------------------------------
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold409     99061 39 -   201088 ATGAAA--------------------------------TTATCGGAA--------------AGTTATGAGACTT--------------------GACGGTTGAAC
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3140310 55 +  4147112 tttgaagtgaa------------------------tgtttttcagaaaaatct--------agttttggaatttc------------------aaataattgaaa
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17934   287185 82 +   591668 gcgaaattcaagttttgaggcatttttttaaatgttttttgagaaaaaaagcata------aattcttaattttt-----------------tccacatgtgctc
i caeJap4.Scaffold17934 I 120 C 0

a score=-6199.000000
s ce10.chrX              4885448 27 + 17718866 TAACACACTACGTATA-AAATTTCAGTC
s caeRem4.Crem_Contig0   1769795 15 -  4500979 -TACAAA------ATA-TCACTC-----
i caeRem4.Crem_Contig0  I 10 I 151
s caeSp111.Scaffold409     99101 28 -   201088 AGAAAAATCTTGTATATGTACTTACCTC
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3140397 27 +  4147112 AGATAAAGTTCGGATG-GCAATCACGtc
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold17934   287267 22 +   591668 -----caatggaatta-tagctgaggtc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10230097 178 + 21540570 I

a score=-9677.000000
s ce10.chrX              4885475 59 + 17718866 TATATCAT-------TTAAATATGACAGCA--------------TTGCTCA--ATTTTGGTCCCTATTTGATTTTTCAGATT
s caeSp111.Scaffold409     99129 57 -   201088 CGTTCCAGCCATATTGGAGGTATGGTATCG--------------TAAATAG--GTTCCA--TGTTATCTGATGAT-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140424 70 +  4147112 taattcga-------aaaaatatgataacgATTGTTTTCATAGTTCAGCAA--ATTCAA--CTGAATCAATTGTT-CAGTTT
i caePb3.Scfld02_0      C 0 I 124
s caeJap4.Scaffold17934   287289 72 +   591668 ---tttagaaattttttaagcctaagaacatcgaatttggt---tcaaccaccatttcg--aaataatcgttttt--agcat
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10230097 178 + 21540570 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-4220.000000
s ce10.chrX              4885534 39 + 17718866 ------TGTGAATAAATG-----TCTAGTA--TTCGAAGGA-AGGTATTTAGA
s caeSp111.Scaffold409     99186 18 -   201088 ------TATCAACA-----------TAGT------------------TTTATA
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   287361 52 +   591668 tgcggagctaaaaaagtgtgttttttggtgtttttgcaggataaatctttac-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e cb4.chrX              10230097 178 + 21540570 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-2046.000000
s ce10.chrX              4885573 25 + 17718866 GTAAGTAAAAGT-------ATTCGGCTATGTT
s cb4.chrX              10230275 12 + 21540570 --------------------CTCaataaaatt
i cb4.chrX              I 178 I 8
s caeSp111.Scaffold409     99204 25 -   201088 ATGTGTTCTGCT-------ATTCAGCCATATT
i caeSp111.Scaffold409  C 0 I 31
s caeJap4.Scaffold17934   287413 32 +   591668 gaaaatcgaagtttggtcaattttatggtatt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-137.000000
s ce10.chrX              4885598 26 + 17718866 AGAAAATTCAAAAAA--------------------ATGTCTTACTG
s cb4.chrX              10230295 20 + 21540570 a-aaaatccagtAAA-------------------------TTACCG
i cb4.chrX              I 8 C 0
s caeJap4.Scaffold17934   287445 46 +   591668 aaaagatacaatacatacattttacaaagaaaaacaggtctcactg
i caeJap4.Scaffold17934 C 0 I 30
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e caeSp111.Scaffold409     99229 31 -   201088 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-594.000000
s ce10.chrX              4885624 12 + 17718866 GCTGTACTTCAC
s cb4.chrX              10230315  4 + 21540570 AAT--------C
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e caeJap4.Scaffold17934   287491 30 +   591668 I
e caeSp111.Scaffold409     99229 31 -   201088 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=583.000000
s ce10.chrX              4885636 6 + 17718866 CTTTTA
s cb4.chrX              10230319 6 + 21540570 Cttttt
i cb4.chrX              C 0 I 2
s caeJap4.Scaffold17934   287521 6 +   591668 cttcga
i caeJap4.Scaffold17934 I 30 C 0
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e caeSp111.Scaffold409     99229 31 -   201088 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-1372.000000
s ce10.chrX              4885642 22 + 17718866 GTGCGTGAAAAATTGCCTGCAC
s cb4.chrX              10230327 20 + 21540570 AACCGTAAGAGCAATTCAGT--
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold409     99260 22 -   201088 GTCCATAAGAGGTTGTAAACAC
i caeSp111.Scaffold409  I 31 C 0
s caeJap4.Scaffold17934   287527 22 +   591668 gagtcgaaaaatgcgacagcac
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3140494 124 +  4147112 I
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-10444.000000
s ce10.chrX              4885664 23 + 17718866 -CAAAATAATTGA---------GGCACCACAAA
s cb4.chrX              10230347 32 + 21540570 -TTAActaattgattatttttcaacactaaaaa
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold409     99282  2 -   201088 -------------------------GC------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140618 16 +  4147112 --CAACATATTAA---------AATAC------
i caePb3.Scfld02_0      I 124 C 0
s caeJap4.Scaffold17934   287549 17 +   591668 cgaaagtgcgcca---------ggca-------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1769810 151 -  4500979 I

a score=-12069.000000
s ce10.chrX              4885687 25 + 17718866 CTTTTGGTTCTGTATTTGGC-A-TGCC
s cb4.chrX              10230383 25 + 21540570 tttctaatacttttttgaat-t-tcag
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1769961 26 -  4500979 tttttatttctgttcCAATCAT-TCGT
i caeRem4.Crem_Contig0  I 151 C 0
s caeSp111.Scaffold409     99284 25 -   201088 GTTTTGCCTCTTCCTCGCAA-T-TTAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140634 23 +  4147112 GTTCTG---CTATTTAGCGA-TCTTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   287566 16 +   591668 agtttgctggcgcgcc-----------
i caeJap4.Scaffold17934 C 0 I 165

a score=-21303.000000
s ce10.chrX              4885712 87 + 17718866 TGA---CTTCATTAACATTG----------TTATCACCGACTATCAGGAGTGTCCATAAAACTGTTGGATTATCATTAATTCTGTATTCTCAATGTTCCC
s cb4.chrX              10230408 75 + 21540570 taa---ACTTATCATTACTCAAGATTTCAATATTCA------------GATATTTATTTACAAAGAGTATAAG------ATTTAGTTTG---ATGTTTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1769987 35 -  4500979 TTG---CCCTATCATTGTTC----------TCTTC-----------------TTTATTACCGAAG-----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99309 55 -   201088 TGTGAATGTTATCGataatg----------tttt---------------attttcattcaa------------------atctaCATTT--AATGTTACC
i caeSp111.Scaffold409  C 0 I 58
s caePb3.Scfld02_0       3140657 65 +  4147112 TGT---TCTTATCAACATCG----------CCCTGA------------AAGGTCCATAAAATGATGGTAAACACGCT--TTCTGCATCT---ATG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   287582 165 +   591668 I

a score=-12246.000000
s ce10.chrX              4885799 58 + 17718866 CCTTATCACAAGTTAATG--CATTGTGAG--TTATTGGTGATTGCAAAAATGAGATTACTAA-----------------------------
s cb4.chrX              10230483 81 + 21540570 --TGATccgaaaaatata--gattttgaagatttaaatctatttttcaaatttaattccTAGTCAA------TTAGAAAAATGCGCACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770022 44 -  4500979 -------CTACAAACGTAATAGTTTTGAA-----------------------TGATTGACAACCAG------ATAATAAA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3140722 75 +  4147112 ---TACCAGAAGATAGTA--CATTGTTATCGATCTCATATTCTGCCCTCATTTCATTACTTGGAAGGTTTCTATGATTGA-----------
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold17934   287582 165 +   591668 I
e caeSp111.Scaffold409     99364 58 -   201088 I

a score=-10192.000000
s ce10.chrX              4885857 36 + 17718866 CAACTC----------------------AGAAGTATCTCCTCA--CAACTGATCTCA---------------------------GCT
s cb4.chrX              10230564 87 + 21540570 TAGCTCATTAACAACACCTTTTTGtgataaaaagtttcattGAAGGAGTTGTACTCTGTTATGTTTTTCATAAACTGAAGGTATGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770066 28 -  4500979 TGGCTC----------------------AAAAGCCTCCATCGA-----------TCTA--------------------------GCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99422 19 -   201088 CAGCTC-----------------------AAA----CTAGTCA-----------------------------------------GCT
i caeSp111.Scaffold409  I 58 C 0
s caePb3.Scfld02_0       3140813 23 +  4147112 CAAGTC-----------------------ACGGGTCCCATTCA-----------------------------------------GCT
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold17934   287582 165 +   591668 I

a score=114583.000000
s ce10.chrX              4885893 204 + 17718866 CAAA----AGTCATG-TGTGCCCACATGTCTTGTAGTACAGGAAGCATGATCATTGGGGCCTTTT------CTAGAA----TGAT-GTTGTACAT---------TGAATCAGTCATATATACATGTATATTTCACAAGAGTGGTCCACTTTTGTTTCGGACCACACGAGCTGGACGCGC----------AGCC------GCATATAATTACCGGAACTTATTTGTCACAAA------GGTGCATGACACAC
s cb4.chrX              10230651 220 + 21540570 CATA----TGTCAAGACA------GATA-TACAGAGTACAGGAAGTGTGATCATTGTGGTCCTCTGATCTCTCAACGGATATAAT-GTTGTATTCAATACTTGCTGAATCAGTCA----------TTTATTTCACAAGACTGG-CCGCTTCCGTTTTGGACCACACGAGCTGGAC-CGC-------ACTCCTCAGTGGACCACATAATCACCGGAACTTATTTGTCACAAATCCATAGGTGCATGACACAC
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1770094 211 -  4500979 CAAA----AGTCAGACCA------TTTGCTGCATAGTACAGGAAGTGTGATCATTGTGGTCCTATCCTATCCTATGG----TAAT-GTTGTACAC------TACTGAATCAGTCA----------TTTATTTCACAAGAGTGG-CCACTTCCGATTTGGACCACACGAGCTGGAC-CGCTGGCCCTCCTCCTC------TTACATAATCACCGGAACTTATTTGTCACAAA-CCATAGGTGCATGACACAC
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409     99441 187 -   201088 CAAA----AGTCAAGACTTGCTCTTTTGTTTCATAGTACAGGAAATGTGATCATTGTCGTCTAT----------------CTTATAGTTGTACAC---------TGAATCAGTCA----------TATATTTCACAAGAGTGG-CCGTTTCCGATTTGGACCACACGAGCTGGAC-CGC---------TCCAT------TCGTATAATCACCGGAACTTATTTGTCACAAA-ACATAGGTGCAC-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3140836 206 +  4147112 CAAAAGTCAGTCAAGACATGCTCTTTTGTTTCATAGTACAGGAAATGTGATCATTGTGGTCTCTTGG----CTGTGG---CTGAT-GTTGTACAC---------TGAATCAGTCA----------TATATTTCACAAGAATGG-CCGTTTCCGATTTGGACCACACGAGCTGGAC-CGC---------TCCCT------TTGGATAATCACCGGAACTTATTTGTCACAAA-CCAAGGGTGCATGACACAC
i caePb3.Scfld02_0      C 0 I 378
s caeJap4.Scaffold17934   287747 179 +   591668 CAAA----AGTCAGA---------CATGTTTCATAGTCCAGGAAACGTGATCATTGAGATGTTTCACTCCC----------TAAC-TATGTATAG---------TGAATCAGTCA----------TATACCTCTCACGAGTGGCCCTCTTCCGAGACGGACCACGCGAGCTGCAC-CGC--------------------CGACATAATCACCGGAACTTATTTGTCACAAA-ACATGGACATGC-------
i caeJap4.Scaffold17934 I 165 C 0

a score=-4043.000000
s ce10.chrX              4886097 76 + 17718866 TAGGTAT---TTGAGCTGAAGA------TCTTTTTTCA-----TTGCTGTTTTTTCGCTGCAGACC---------AATATTACTCATTTGTTCATTTCA
s cb4.chrX              10230872 74 + 21540570 -ATACAT---TCAGG-GGAGGA-----GTCCGAGAAAGGAGctctattcattttttttgtt-tctc---------aatattagTCAC-----ATTCTCT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1770307 77 -  4500979 GATATAT---TCAAGCAGAAGA-----GTCCGTAAGag-----ctctttattttttcactgaactC---------AATATTAGTCATTCGTATTTTTTC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409     99628 78 -   201088 AAGATAT---TTGAGCAGAAGA-----ATCCGTAAGAG-----ACCCTTATTTTTTGCTGAGTCTC--------AAATATTAGTAACTTCTCATTCTGC
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   287926 93 +   591668 AAGATACTCGTCGTGCTGGAGATTCATTTCATTCAATG-----CTCCAGCTTTTTTCACCACTGCCTGcaaacaaaacgttttttgttggtaatttca-
i caeJap4.Scaffold17934 C 0 I 96
e caePb3.Scfld02_0       3141042 378 +  4147112 I

a score=-2427.000000
s ce10.chrX              4886173 53 + 17718866 AAGGGAATTTGCTGATATCTTAATACATCCACAGTAACATGCTGCATACGGTA
s cb4.chrX              10230946 35 + 21540570 TCGGA------CAGAAGTTTCTAGAC------------ATGCTGCATACTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770384 34 -  4500979 TCGGA------------TTTTTTGGCGA-------ACGATGTTGCATACGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99706 47 -   201088 GAAGAA--TTACATTCAGTTTCAAGTGATC----TGCTATGCTTCATACGGTA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019 96 +   591668 I

a score=436.000000
s ce10.chrX              4886226 3 + 17718866 CGT
s caeRem4.Crem_Contig0   1770418 3 -  4500979 AGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99753 3 -   201088 AGT
i caeSp111.Scaffold409  C 0 I 129
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019 96 +   591668 I
e cb4.chrX              10230981 0 + 21540570 C

a score=190.000000
s ce10.chrX              4886229 16 + 17718866 TTTA--AACTTTCCACAG
s caeRem4.Crem_Contig0   1770421 18 -  4500979 TATATGGGTTTTTCATAG
i caeRem4.Crem_Contig0  C 0 I 17
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019 96 +   591668 I
e cb4.chrX              10230981  0 + 21540570 C
e caeSp111.Scaffold409     99756 129 -   201088 I

a score=0.000000
s ce10.chrX              4886245 794 + 17718866  
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019  96 +   591668 I
e cb4.chrX              10230981   0 + 21540570 C
e caeSp111.Scaffold409     99756 129 -   201088 I
e caeRem4.Crem_Contig0   1770439  17 -  4500979 I

a score=385.000000
s ce10.chrX              4887039 40 + 17718866 agTCATTTCTCCAAAA--AAAAAGAAAATGAGCCCACattat
s cb4.chrX              10230981 42 + 21540570 AGTTCTTTTTTGTGAATTGAAATGAAACTGATAGcaaatctt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019 96 +   591668 I
e caeSp111.Scaffold409     99756 129 -   201088 I
e caeRem4.Crem_Contig0   1770439 17 -  4500979 I

a score=455.000000
s ce10.chrX              4887079 5 + 17718866 taatt
s caeRem4.Crem_Contig0   1770456 5 -  4500979 taatt
i caeRem4.Crem_Contig0  I 17 C 0
e caePb3.Scfld02_0       3141042 378 +  4147112 I
e caeJap4.Scaffold17934   288019 96 +   591668 I
e cb4.chrX              10231023 0 + 21540570 C
e caeSp111.Scaffold409     99756 129 -   201088 I

a score=-1538.000000
s ce10.chrX              4887084  5 + 17718866 ttttt-------
s cb4.chrX              10231023  3 + 21540570 --att-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770461 11 -  4500979 -tatttcaagcc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3141420  5 +  4147112 TCTTT-------
i caePb3.Scfld02_0      I 378 C 0
e caeJap4.Scaffold17934   288019 96 +   591668 I
e caeSp111.Scaffold409     99756 129 -   201088 I

a score=42.000000
s ce10.chrX              4887089 5 + 17718866 aaaat
s cb4.chrX              10231026 2 + 21540570 ---tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770472 5 -  4500979 aaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99885 5 -   201088 aatat
i caeSp111.Scaffold409  I 129 C 0
s caePb3.Scfld02_0       3141425 5 +  4147112 TAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   288019 96 +   591668 I

a score=254410.000000
s ce10.chrX              4887094 346 + 17718866 tCCAGCCCCAACTTTCATGTGAAGAAAATCTGTCGGAATGTATGCTAGAATTATCCAGAAAAGATGCATGTTACAACTGGGGAGACACGATTCAAGGTAAACTTAATCTGAAAATCTCCGAAGGATCTATCGAAATCACATCCCTTCGCATTCTTTTTCATGGTTACGGGAAAATCAACTGCAAAGGAAAGGTATTTTGCA--------ATTGGCATATATGTTTTACATTATGTTTTTCT-TTTCAGAAAGATGAACTTCTGCAGGAAAATATGACGTATATGAAAAAGTTTTCTAATGCCATATCACAACCTATTGTGGTTTCGCAACAGGAATATTCAATTCCGATTGAGGT
s cb4.chrX              10231028 341 + 21540570 tccagCCCCAGTTATCATGTGAagagaatcttctagaatgcATGCTGGAACTAACCAAAAAGGATGCTTGTTATAGTTGGGGAGACACAATACAAGGgaaattgaatctgaaaatctccgaTGGTTCTATTGAGATCACATCTCTACGCATCTTATTTCACGGTTATGGCAAAATTCATTGCAAGGGAAAGGTGTAAAttt--------tatc---ttttgtttttaa---atttttttcatttccagaaaGATGAGCTTCTACAGGAAAACATGACTTACATGAAAAAATACTCGAATGTCATTTCACATCCGCTGATAATTTCCCAGCCAGAGTATTCCATTTCTATTGAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770477 344 -  4500979 ttcagccacagTTGTCTTGTGAAGAGAATCTACTAGAATGTATGCTGGAGTTATCCAAAAAGGATGCTTGCTATAGCTGGGGTGACACCATCCAAGGAAAACTCAACCTGAAAATCTCTGATGGGTCTATTGAAATCACATCACTCCGTATTCTATTCCACGGGTACGGTAAAATTCATTGCAAAGGAAAGGTTTGTGACA--------AATC---CTTacaatttaatgcatttttgttACTTTCAGAAAGATGAGTTGTTACAAGAAAACATGACGTATATGAAAAAGTTCTCGAATGCTATATCTCACCCATTGGTGGTTTCGCAACCGGAATATTCTATAGCAATTGAggt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409     99890 342 -   201088 tctAGCCCCAACTGTCCTGTGAAGAGAATCTGTCGGAATGTATGCtggagctatcaaaaaaagattcctGCTATAGTTGGGGTGATACCATTCAAGGAAAGCTCCACCTGAAAATAACTGAAGGTTCTATCGAAATCACTGCACTTCGTATTTTATTCCATGGATATGGAAAGGTTCATTGCAAAGGAAAAGTTTGTTTATACCACAAGACTCG--ccgaaaatgtgtttt-----------ttctagaaagaTGAAGTTCTTCAAGAGAACATGACGTATATGAAAAAGTTCTCGAATGCCATTTCTCACCCTGTGATGGTTTCACAGCCAGAATATTTCATACCGATTGAGGt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3141430 344 +  4147112 TTCAGCCGCAACTATCTTGTGAAGAAAATCTCCTGGAATGTATGCTAGAACTTTCAAAGAAGGATGCTTCCTATAGTTGGGGTGACACCATCCAAggaaaacttcatttgaaaatctccGAAGGCTCTATTGAAATCACAGCACTTCGTATTCTGTTTCATGGTTATGGAAAAGTGCATTGCAAAGGAAAGGTATCTAgat--------atttt--tttacaatttattATATTTCCATCA-TTCCAGAAAGACGAGGTTCTTCAGGAGAATATGACGTACATGAAAAAGTTCTCGAATGCTATTTCACATCCAATCGTAGTGTCACAACAAGAGTATTTCATACcaattgaggt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   288115 344 +   591668 TTTAGCCGCAACTCTCTTGTGAGGATAACCTGCTTGAATGTATGCTGGAGTTTACCAAAAAAGAAGCCTGTTACTGTTGGGGAGATACTGTTCAGGGAAGGCTTCACATTAAACTTTCGGATGGTTCTATTGAAATTACATCTCTTCGAATTCTGTTTCACGGTTATGGAAAAGTTAACTGCAAGGGAAAGGTACGCTAGT--------TTTCC--GTTAAATTATATTTCgcaaattaat-tttcagaaagatGAGGCTCTTCAAGAAAACATGACATACATGAAAAAGTTCTCCCATGTGATATCTCAGCCTTTTGTTGTTTCTCAACAAGAATATTCATTTCCGATTGAGGT
i caeJap4.Scaffold17934 I 96 I 419

a score=-7991.000000
s ce10.chrX              4887440 28 + 17718866 TTCT------------TGAAGATAATCTTAAA--AATCTTAC
s cb4.chrX              10231369 27 + 21540570 AGTT------------AGAAAAAGATCCTTAA--A-TCGTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770821 34 -  4500979 ttttgtttct--cttgaAAATAAGATGTATGA--A----TAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    100232 34 -   201088 ttat----ctgatttttgaaattttttattaacga----ttc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3141774 30 +  4147112 tttt----tt--ctgtggaaaATAATGTTTGA--A----CAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   288459 419 +   591668 I

a score=356869.000000
s ce10.chrX              4887468 515 + 17718866  
s cb4.chrX              10231396 520 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1770855 513 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    100266 507 -   201088  
i caeSp111.Scaffold409  C 0 I 22
s caePb3.Scfld02_0       3141804 518 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   288878 525 +   591668  
i caeJap4.Scaffold17934 I 419 C 0

a score=698.000000
s ce10.chrX              4887983 10 + 17718866 AGTGACATTT
s cb4.chrX              10231916  9 + 21540570 -agaaaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1771368 10 -  4500979 TAGGACAGTT
i caeRem4.Crem_Contig0  C 0 I 27
s caePb3.Scfld02_0       3142322 10 +  4147112 AATCAAATGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   289403  9 +   591668 -TGTATATTT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    100773 22 -   201088 I

a score=-1179.000000
s ce10.chrX              4887993 5 + 17718866 TGGAA---
s cb4.chrX              10231925 5 + 21540570 cgaaa---
i cb4.chrX              C 0 I 77
s caePb3.Scfld02_0       3142332 2 +  4147112 ---AG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   289412 5 +   591668 ---agcac
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    100773 22 -   201088 I
e caeRem4.Crem_Contig0   1771378 27 -  4500979 I

a score=-184.000000
s ce10.chrX              4887998 21 + 17718866 ATTCTTATTTCAAAATTGAAA
s caePb3.Scfld02_0       3142334 15 +  4147112 ------ATATCCGAATTGGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   289417 20 +   591668 -attttttaaaaaaattaaaa
i caeJap4.Scaffold17934 C 0 I 19
e cb4.chrX              10231930 77 + 21540570 I
e caeSp111.Scaffold409    100773 22 -   201088 I
e caeRem4.Crem_Contig0   1771378 27 -  4500979 I

a score=436.000000
s ce10.chrX              4888019 78 + 17718866 CAGTATTGAAAAATTCAAT---------------TTTTATTGAAGAACATATTCTTTTAAATTTCTTTTAAGTTGAAGGTGCATTTTCTACTA
s caePb3.Scfld02_0       3142349 92 +  4147112 TATCAGGGAGAATCTTCATGCGGAAACCATCCTGTTTTCATGAAGTTGA-ATCGtgctcaatttattttcagtcaaactTACCTTTTCCATCA
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17934   289437 19 +   591668 I
e cb4.chrX              10231930 77 + 21540570 I
e caeSp111.Scaffold409    100773 22 -   201088 I
e caeRem4.Crem_Contig0   1771378 27 -  4500979 I

a score=0.000000
s ce10.chrX              4888097 642 + 17718866  
e caePb3.Scfld02_0       3142441  10 +  4147112 I
e caeJap4.Scaffold17934   289437  19 +   591668 I
e cb4.chrX              10231930  77 + 21540570 I
e caeSp111.Scaffold409    100773  22 -   201088 I
e caeRem4.Crem_Contig0   1771378  27 -  4500979 I

a score=344.000000
s ce10.chrX              4888739 17 + 17718866 TCTTCAAACTTTTTCTT
s caeSp111.Scaffold409    100795 14 -   201088 ttttcaaattgttt---
i caeSp111.Scaffold409  I 22 C 0
e caePb3.Scfld02_0       3142441 10 +  4147112 I
e caeJap4.Scaffold17934   289437 19 +   591668 I
e cb4.chrX              10231930 77 + 21540570 I
e caeRem4.Crem_Contig0   1771378 27 -  4500979 I

a score=182.000000
s ce10.chrX              4888756 2 + 17718866 TA
s caeJap4.Scaffold17934   289456 2 +   591668 ta
i caeJap4.Scaffold17934 I 19 C 0
e caePb3.Scfld02_0       3142441 10 +  4147112 I
e cb4.chrX              10231930 77 + 21540570 I
e caeSp111.Scaffold409    100809 0 -   201088 C
e caeRem4.Crem_Contig0   1771378 27 -  4500979 I

a score=419870.000000
s ce10.chrX              4888758 553 + 17718866  
s cb4.chrX              10232007 547 + 21540570  
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig0   1771405 551 -  4500979  
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold409    100809 550 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3142451 554 +  4147112  
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   289458 723 +   591668  
i caeJap4.Scaffold17934 C 0 I 17

a score=-6578.000000
s ce10.chrX              4889311 29 + 17718866 CAAGACAAATTTAATAAGATAACCAAAAT
s cb4.chrX              10232554 21 + 21540570 agtaaaaaact---gaaaataac-----t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1771956 18 -  4500979 tgaaacaaatt---tgTACTA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    101359 19 -   201088 atatttaaaat-aatgaaat---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3143005 17 +  4147112 TTGATcaaatt---cgagat---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   290181 17 +   591668 I

a score=141899.000000
s ce10.chrX              4889340 158 + 17718866 ATTTCAGCTGCAACATGTGAACAAATATCCATTTTTTGCAACTCTTCCAACATCGTCAAAACAGAGCAAGAAACTTTGCGTTATTGCTCAAAATATCAAAGTTGAAAACAAAATCATGAATACTATAAAAAG---CGCTGTGGACGATGAAAAATACTAAT
s cb4.chrX              10232575 158 + 21540570 aTTTCAGCTCCAGCATGTAAACAAATATCCTTTCTTCCCGACGCTTCCAACATCTTCAAAACAGAGCAAAAAACTGTGTGTAATTGCTCAGAcaataaaaacagaaaatcggATCATGAACACAATTCGAGG---TGCAGTGGAAGAAGagaaatattaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1771974 161 -  4500979 TTTTCAGCTGCAACACGTCAACAAGTACCCATTCTTTGCTACTCTCCCTACATCTTCCAAGCagagcaaaaaattatgtgtGATCGCGCAAacaatcaaaactgaaaatcgcatCATGAACACTATACGAAGTGCTGcagtggaagaagaaaagtattAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    101378 158 -   201088 ttaACAGCTGCAACATGTGAACAAGTATCCATTCTTTGCAACTCTCCcaacttcttcaaaacaGAGTAAGAAACTATGCGTTGTTGCACAAAcaatcaaaactgaaaaccgCATCATGAACACTATGCGAGG---TGCTGTGGACgaggaaaaatattgat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3143022 158 +  4147112 ttttcagCTGCAACATGTAAACAAGTATCCATTCTACCCAACTCTCCCAACATCATCAAAACAGAGCAAAAAGCTTTGTGTTGTTGCTCAGACTATCAAAACTGAGAACCGCATCATGAATACAATGCGAGG---Tgctgttgaagaagaaaaatattgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   290198 158 +   591668 TTTACAGTTACAACATGTCAACAAATACCCATTTTATGCAACCCTACCAACATCTTCCAAACAGAGCAAAAAACTTTGCGTGGTTGCTCAGACAATCAAAACGGAAAATCGCATCATGCAAACTATAAAAAG---TGCCGTCGACGAAGAGAATTATTGAt
i caeJap4.Scaffold17934 I 17 I 1204

a score=-18094.000000
s ce10.chrX              4889498 48 + 17718866 TGCAACTCACTAGTTTTTTTTCTTACGAATAAAGCTTATGGTTCAATA---------------------
s cb4.chrX              10232733 50 + 21540570 t-tttgtgtgt--tttttttgcttttgaatAAA-------GTAATAAATTGgcttgattt---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1772135 41 -  4500979 C-tgacttttta-ttttcttattcttataTAAC------TTtcataaat--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    101536 48 -   201088 t-tgaCATGCCATTTATCTTATtattaaa-----------ac--aaaac-------ttttgtctgaata
i caeSp111.Scaffold409  C 0 I 313
s caePb3.Scfld02_0       3143180 44 +  4147112 t-tg---------ttaacttttcataaaa-----------gttgaaaat--gatcatttttgcaaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I

a score=-1896.000000
s ce10.chrX              4889546 29 + 17718866 TATGAAATACTT-ATTGTTGTTTTGGTGTA---
s cb4.chrX              10232783 30 + 21540570 tctgaaatagtgattttttgtgtttgcatA---
i cb4.chrX              C 0 I 151
s caeRem4.Crem_Contig0   1772176 26 -  4500979 ----aaatatttaacttttgaagttttaaa---
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3143224 27 +  4147112 --taaaacGTTA----TTCGCCgctttgaatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=-1372.000000
s ce10.chrX              4889575 27 + 17718866 AAGTTGGCAAGACGGATATGATGTTTT--
s caeRem4.Crem_Contig0   1772205 14 -  4500979 --------AA-----CCATACTGTTTT--
i caeRem4.Crem_Contig0  I 3 I 94
s caePb3.Scfld02_0       3143251 14 +  4147112 --------aa-------attttgatttct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e cb4.chrX              10232813 151 + 21540570 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=235.000000
s ce10.chrX              4889602 34 + 17718866 TCCAGTTCAAATCCGTTGTTTAGTTATTTGGAGA
s caePb3.Scfld02_0       3143265 30 +  4147112 tgaaatgGAAA----TTATTCCGTTAATCAAAGA
i caePb3.Scfld02_0      C 0 I 50
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e cb4.chrX              10232813 151 + 21540570 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772219 94 -  4500979 I

a score=0.000000
s ce10.chrX              4889636 72 + 17718866 AACCAACAATGATGGAACATCAAAACAAAAATCTAAAAAAAAAACAGTAGTACAAAAAAAGGGAATTGTATT
e caePb3.Scfld02_0       3143295 50 +  4147112 I
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e cb4.chrX              10232813 151 + 21540570 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772219 94 -  4500979 I

a score=273.000000
s ce10.chrX              4889708 3 + 17718866 TTT
s caePb3.Scfld02_0       3143345 3 +  4147112 ttt
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e cb4.chrX              10232813 151 + 21540570 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772219 94 -  4500979 I

a score=-597.000000
s ce10.chrX              4889711 48 + 17718866 TAAAACTTTCTTGCGCATCTGT--ACTGATCCGTATTTCATTTTTTTTTT
s cb4.chrX              10232964 49 + 21540570 GAAGATTTGCTTGCGAGTCTCAAGAAGAATGCGTTTTCTAAATCTGTTT-
i cb4.chrX              I 151 C 0
s caePb3.Scfld02_0       3143348 36 +  4147112 tgaaatttgc--------------atCAGTGATCcttcccggtttttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772219 94 -  4500979 I

a score=-26458.000000
s ce10.chrX              4889759 226 + 17718866 GAGACAATATTCTCACTAGAAAAATC-ATAAAGTTTGATGA------TTCATGGGAAAAAAAGCAAAAATGCAAGTGAGCGCTATAAAAGTCACACGGTTGTTTTTAAAACTTCTC-----GACTTATTTCCCGTTGTTCCAAGAAATTTTCTATCAAACCTGCGGAGAGGGACTTATTTGAATT-----GT----TTTCAGACAAATCAAAAGGACTGGATGACTAATTGATACTGCAATAATAAA
s cb4.chrX              10233013 145 + 21540570 -----ATCACTAT-----------TT-TTGCGCTTTGCTGA----------TCGGAAAA----TAGAATTTctact-------ctgaaa-------------tttgaatactTAAC---------AATT--CCGTAGATTcctaaa----ttccgaaaatccgaa---------cttttggaatt-----atggaatttctgatttgttAA------------ACttatt-----tggacca-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1772313 163 -  4500979 GAGAAAGCATTCC-----------TT-TCAAACTGAGCTCAAATTAATGTCTCACAAAA----------CTCAAAT-------CTCAAA----------------GGAAATTAAGC---------TGTCTGCTATCATTTCCTGAA----GTCATTCACTGCACA---------TTATTCTACTC-----ATATTCTTTCAATCTTATTGAGA------GCTTACTGATT-ACAATGTCTAA-----
i caeRem4.Crem_Contig0  I 94 C 0
s caePb3.Scfld02_0       3143384 159 +  4147112 -----agtacttt-----------tcataaaacttttctga-------atatcaGTATA----------CTTTATC-----------AA----------------TATTATTTCACGCGTGTGCTTGTGTACCACTGA--CATGAA----TCGACGAAAGAAACg---------tttttaaaagttcaaaatgggAAGTTGAATCTTTCAT------------TCTTATT-TTGGTGCGAAAATGAA
i caePb3.Scfld02_0      C 0 I 87
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=-2748.000000
s ce10.chrX              4889985 27 + 17718866 AGTTG--CTTCCGGAGTTGAATAAAACTT--
s cb4.chrX              10233158 30 + 21540570 ttttatccttttttggtgaataactatttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1772476 29 -  4500979 TCTTA--CTATCACAGTCACCagcaaaacct
i caeRem4.Crem_Contig0  C 0 I 92
e caePb3.Scfld02_0       3143543 87 +  4147112 I
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=-124.000000
s ce10.chrX              4890012 60 + 17718866 ATGAAAACTA--CTACAAAAGTACATACAATCTACGTTAACAAATAAAATGTTGTTGGCAAC
s cb4.chrX              10233188 50 + 21540570 ttgaaacccattttgtaaaaatgagcgagttcta-----------aaaatgtttttga-aga
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3143543 87 +  4147112 I
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772505 92 -  4500979 I

a score=-2778.000000
s ce10.chrX              4890072 48 + 17718866 -----AAATTTCATTTATCATCAAAAGTCATTTTTGAGAAAATTTAG----TAATTC-------
s cb4.chrX              10233238 48 + 21540570 aaccagaatttt-----tcaataaatgttCTATTCAagtatttttta----tatttt-------
i cb4.chrX              C 0 I 4
s caePb3.Scfld02_0       3143630 51 +  4147112 -----AAATTT--------AATGAAGACCTAGttgcaatttttcataaactcatttttcaactc
i caePb3.Scfld02_0      I 87 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I
e caeRem4.Crem_Contig0   1772505 92 -  4500979 I

a score=-21370.000000
s ce10.chrX              4890120 150 + 17718866 TCTGTTTCTCAC----------A-----ATTTGTTACCGAT---AGAATTTTCAATTAACTTCTTGAAAGTGCACTCAACTAGCACAAATGTGCAACCTGCCACTGCACC----AAATTGATTTTCTATTT--TTCATTCATAATTC-------------------ATTTTC--TGAT-------ATGCAATT-----------ACGTAGTGT
s cb4.chrX              10233290 167 + 21540570 tATATTTGTAAA----------ACCCCAAGATTTTGCTTGTTCGTAGCATTCTCATCgtgttctctgaa--aaaatcatcAGGTTTTG------TACCCGCCACTCTCAA---------AAATCTCCATTC-------TCAAGAATGCAATTTC------------ATTCTCGTGACTACATCTAATTCAATTCGCGGCTGAAAACAAATTGT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1772597 115 -  4500979 TCTATTCCTCAA----------AGCC--ACATGTTATCCATTCGC--------------------------AAAACCAATTGGATTTG---------CCTAGACGTTGTA---------GTCTATTGATTC------TTCTCGAATA---------------------TCTCAGGAGC-------ATGCAAGTCAC--------ACGTTTTGT
i caeRem4.Crem_Contig0  I 92 C 0
s caePb3.Scfld02_0       3143681 190 +  4147112 tcAACTTTACGAAAAATCAGATACCC--GCATATTCTATTTCCGGATATATCCGCTCGTCCTCTCCAT---ACAGCCATTTTTCATCAA--CGCCAACTGCCACTTTCTGTTTTCCTTTGGTTTCCCACTCGCACCACTCGTGACTCCATTTTCCGCTCGGcacaaattttgatgaat-----ttatGCGATC-----------ACATATTCT
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=1430.000000
s ce10.chrX              4890270 31 + 17718866 ------TGGCAACGA--GAGCGCGCA-------CTCTACGAGGAAA
s cb4.chrX              10233457 46 + 21540570 ATCCGTTGGCAACGAACGAACGCGCCTCCCTCTTTTCCTCCGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1772712 37 -  4500979 AACC--TGGCAACGAAGGAACGCGAA-------TTGCCTTAGGCAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3143871 26 +  4147112 I
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=-5660.000000
s ce10.chrX              4890301 37 + 17718866 TGTGA----------TTGTGTAAAGGGGTGCGCGTGTGT--GTGTGTGC
s cb4.chrX              10233503 13 + 21540570 CGTAA------------------------------------GCAGATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1772749 13 -  4500979 CGTGT------------------------------------TCTGACGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3143897 49 +  4147112 TGTGTCTCtggaaaattcttgaaaaaattgggtgagTAACGACTGGCAA
i caePb3.Scfld02_0      I 26 C 0
e caeJap4.Scaffold17934   290356 1204 +   591668 I
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=531.000000
s ce10.chrX              4890338 2 + 17718866 CC
s cb4.chrX              10233516 2 + 21540570 CA
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1772762 2 -  4500979 CA
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3143946 2 +  4147112 CA
i caePb3.Scfld02_0      C 0 I 41
s caeJap4.Scaffold17934   291560 2 +   591668 Ct
i caeJap4.Scaffold17934 I 1204 C 0
e caeSp111.Scaffold409    101584 313 -   201088 I

a score=169420.000000
s ce10.chrX              4890340 380 + 17718866 GTGCATTTTCCCGTCACCGTGTTTGCAC---ACTCTGCTTTTTTAGTTTTGT------ATGCGGTTTT-CACCGCATGGTTTCTCCCCGCTGATTCGA--CCTTTTCGGGGAAAATGAAACCCCGCGGGTGGCTTCTGTTCAGTTTTTTGCTAATTATTCAAGTCGCCTATGCCAAAATCCCTCGGGAATATGAGGAAGTCGGTAAGTGATTATATACAAATCTGTTTT-ATGAATATACATATTT----CAAA-------------------ATTTCAGAAAATCAAGACAATATGCTATTCACAGTCACAGAACCATATACGCTCGCCTATACATATCAAATGAAACACGCATTCATGCTTGGAGTTCATTTCCCAGATGGAGCAAACAAAACTTTCCGGGT---AAGAGTTTAGTT-
s cb4.chrX              10233523 367 + 21540570 GTGTAAAAGATCGTGGCGGTGTTTACAC---CATTCCT--------TACGTT------TTGCGTATTCTCAACACATACTCACCC---TCTTAACCACATCATTTTTGACGAAAATGAAGCGTCGTGGGTGGCAAATGTTTGTATTCTTGCTATTTATCGGATTTATTTATGCCAAGATTCCCAAGGAGTACGAAGAAGTTGGTAAGT------------GTTCATCTTAATGAGGGAAACCGttc----aaataatgaaaaaaa--------aatgcagaagATCACAACAACATACTCTTCACAGTCACCGAGCCGTACATGTTGGCATATACGTATCAAATGAAACACGCGTTCATGCTTGGAACTCATTTTCCTGATGGAATCAACAAAACAATGAAGGT---TAGTGtt------
i cb4.chrX              I 5 I 3
s caeRem4.Crem_Contig0   1772768 380 -  4500979 GTGCATTCTGTCGTCGCGGTGTTTGCAC---TATCCGTCATATATgtatttt------ctccttttttccaacGCATGATTTCCCCCATCTGATTCAC--TATTTCCGGGGAAAATGAAACATCGCGGGTGG---ATATTTTGTTTCCTTCTAATTATCGGATCAGTTATTGCCAAAATCCCTCGTGAATATGAAGAAGTTGGTGAGT------------TTCTTTGccaatgaatggaaaaatt-----agggaattaattcat--------ttttcagttaatcaAGACAATATTCTCTTCACAGTCACAGAGCCGTATATGCTCGCCTACACCTATCAAATGAAACACGCATTCATGCTTGGAACACATTTTCCGGATGGTGCCAACAAGACTCTGAAGGTATGTAGCATTTTGCC-
i caeRem4.Crem_Contig0  I 4 I 4
s caeSp111.Scaffold409    101897 383 -   201088 GTGCAGTTTGCCGTGGCGGTGTTTGCACATACTCTCGTCATATATGTATTAT------CTGCCGTTTCCCAACATATGGTTTCTCTCTCCTGATTTGC--CATTTCCGGGGAAAATGAGACATCGCGGGTGGTCAATTCTATATTTTCTGCTTTTATTGAATGTAATCAATGCCAAAATTCCAAAGGAGTATGAGGAAGTTGGTGAGT------------ATCATTCtc---gcat------tttt----taaatcgtGATTAAtattatttaatttcagaaaatcaggACAACATGCTTTTCACTGTCACATCACCCTACATGCTTGCTTATACATACCAAATGAAACATGCATTCATGTTAGGAACTCATTTCCCAGATGGAGCCAATAAAACCTTGAAAGT---GAGTGTTTTAAT-
i caeSp111.Scaffold409  I 313 I 101
s caePb3.Scfld02_0       3143989 380 +  4147112 GTGCATTCTGCCGTCGCAGTGTTTGCAC---CATCCGTCATTTATGTTTTAT------CTCCCACACTGCATCGCatggttttttctctctaaatCAC--CATTTCCGGGCAAAATGAAACATCGCGGGTGGTCGATACTatgttttattctgttttttcgaacGGCCATTGCTAAAATCCCACGGGAGTATGAGGAAGTCGGTAAGT----------CAATTATTTAG---GAGCCaagtatttt----taaatttcaaataat--------ttctcagaaaatcaagACAACATGCTCTTCACAGTCACCGAACCGTATGTGCTTGCTTACACATATCAAATGAAACATGCCTTCATGCTTGGAACCCACTTTCCGGATGGAGCGAATAAAACCTTGaaagt---gagttatttttt-
i caePb3.Scfld02_0      I 41 I 36
s caeJap4.Scaffold17934   291562 387 +   591668 gtgcatttgcgcgtcacgGTGTCTGCAC---CATTTGTCATCTCCGTCGTATTAAAAATTGGTGTTTGTC---------TCTTTTTCGGTTTCaccga--caaaaccgggaatgATAAAATCATTCACCCTgctattattttattttctatttgtttttggCCGAATTTCAGGCAAAATCCCGCGGGAATATGAAGAAGTTGGTGAGT--------------TATTTGCCATGTTTTAATTGTTTCGTggaaaatgttgattttttttttc--ttttcagaaaatcaagaCAACATGCTTTTCACAGTGACCGACCCATACATGCTGGCGTTTACCTACCAGATGAAGCACGCCTTTATGCTCGGAACTCATTTTCCGGACGGAGCGAACAAGACGTTGAAGGT---GGGTGGGTGCGTT
i caeJap4.Scaffold17934 C 0 C 0

a score=-15724.000000
s ce10.chrX              4890720 50 + 17718866 ---ATTTTCGTG----------------AAAATA--TTTATTGTTTGATAACTTA---GTAGAA-----CAGCAGA---TCC
s cb4.chrX              10233893 58 + 21540570 ---attctgaat----------------gaaTTTTGATTACGGAGTCGTGATACATGCTCAGCA-----tggaaaaaagtca
i cb4.chrX              I 3 I 59
s caeRem4.Crem_Contig0   1773152 47 -  4500979 ---ACTTTCCAG----------------AAAATT--AGTGC----TCATGACTCA---TCAGC------TGGCATAAA-TCA
i caeRem4.Crem_Contig0  I 4 I 58
s caePb3.Scfld02_0       3144405 50 +  4147112 ---GTCTCCGCG----------------AAAATC--AATAT----GCATGTCGCA-ACCCTGAA-----CGGGTTGGT-TCT
i caePb3.Scfld02_0      I 36 I 48
s caeJap4.Scaffold17934   291949 74 +   591668 TTGATTGCAAAGGAAAAggcaaaggaaaaaaata--aataatatttgAACTAGAA---GCAGAAGCTCTCAGAAGAAT-T--
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    102280 101 -   201088 I

a score=122422.000000
s ce10.chrX              4890770 365 + 17718866 GGGTGTTTTTTGTAAA-----------AAAGAAATTAC----------GGAAATCACCTTTTTT---------AGAATCTGGAAATGGTCCTCGCCGATCCCGTCCACGGATGTGAGGCTCTGCGCAATGAGATCTTTGCCCCTTCAGTCATTCTCATGGAGCGAG---------------------------------------------------------------GAGAATGCTCTTTCACCGTAAAAGCACTCAATGGAGAAAAAGCTGGAGCCACCGTCATAATGGTCACCGACTCACAGAACTACGGTACACTCCTTGATT-----ATAAAACCATAAATACAACTTTAATG-------AATTT---CAGAATACAGTTATCATCAGTACTACGTCAATATGATACCTGACGAGTCTTTGGATCGTGCCAACGTCCCATGTGTCTATGTTGCACCAGTGACAGGGT
s cb4.chrX              10234010 416 + 21540570 tgattcgatttgaaaa-----------atatgaactgT-----------AAAGTATATTTTCTTTA---TTACAGCACATGGATATGGTTCTTGCTGATCCCATCAACGGATGCGACACACTTCGTAACATCATCTTCGTTCCAACAGTGATTCTCATGGAAAGAGGGTATGTTTTC-------TTATCTAAAATT------CAACCTGTGAATAATTAAACCTTTTCAGAGGTTGCTCGTTCACGGAAAAAGCAATTCACGGACAAAAAGCAGGCGCTTCTGTTGTTATGGTCACAGATTCAGAGAAC-ATAGGTAGT--------------GTCTTACTAAATGCCGATATTT-AGGagattgattttt---tagaatacgGACCTCAGCAGTACTACGTCAACATGATTCCTGATGAGTCGTTGGATCGAGCTGATATTCCTTGCGTTTTTGTTGCTTCGATAACGGGGT
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig0   1773257 430 -  4500979 TGAAGccatttaaaaattcataaacATAAGTGAACTGT-CACTT----CAgaataaaatttgttt-------cagaatttggaAATGGTCCTGGCTGACCCAATAAATGGATGCGATCCTCTTCGTAACGAAATCTACGCGCCAACAGTCATTCTCATGGAGAGAGGGTATTTCTTTCATTCCATTACTTGAAATT------aaac-----aataattta----tttcagagacTGCTCATTCACAGTGAAAGCCATCAACGGAGAGAAAGCTGGTGCTTCTGTCGTTATGGTAACAGATTCGCAAAACTATGGTGAGTCTTTCAAATACTTGGTTTAACCAAACGTCtgtct-------------gtttt---cagaattcggaTTCCGTCAGTACTACGTCAACATGATACCCGACGAGTCTTTGGATCGGGCGGAGATTCCATGTGTATATATCGCTCCTGTCACTGGGT
i caeRem4.Crem_Contig0  I 58 C 0
s caeSp111.Scaffold409    102381 408 -   201088 ---------------------------TGTTGATCTCAGAGCATACA-CGAATgaagatttatt-----tttcagaacctgGATATGGTAGTTGCAGACCCGATTCATGGATGTGAGcctcttcaaaatgaaatatacGTGCCGACAGTTATTTTAATGGAAAGAGGGTATGTattc----aaaatatatttca--------tAAC--ATGAACAATATATA--TTGCAGAGAATGTTCGTTCACTGAAAAAGCGCTCAACGGAGAAAAGGCTGGAGCGACTGTTGTGATGGTCACGGATTCACAGAATTCTGGTAA---TTTCA--------TTCATAAGGAAGATGTGTGTTatatgaaaat--tattt---cagaatacaaCCAACGTCAGTACTATGTGAACATGATACCAGATGACAGTTTGAACCGTGCTGAAGTTCCATGTGTATACATTGCTCCAATAACAGGGT
i caeSp111.Scaffold409  I 101 I 73
s caePb3.Scfld02_0       3144503 417 +  4147112 ---------------------------AAATGATTTGTGCACCTAC--CAAATTTcgctttttcta---tttcagaatcTCGAGATGGTTGCTGCTGAACCAATCACCGGATGTGAACCTCTTCTCAATGAAATCTACGAACCAACAGTTCTCATCATGGAGAGAGGGTACATATAC----TCACCAGTTTTAATTTTGGTGTACC--aacaataattcaaa--tttcagagacTGTTCCTTCACAGTGAAAGCAATGAACGCAGAGCGAGCTGGTGCAACTGTCGTGATGGTCACTGACACCAACAATTATGGTGAGTGTTGTA--------TACGCATGAAAGTACTG------ATgacatc--tttttttgcagaattcaGTACCCGGCAGTACTACGTCAACATGATTCCCGATGAATCTTTGGATCGTGCAGCGATTCCATGCGTCTACATTGCTCCAGTGACAGGGT
i caePb3.Scfld02_0      I 48 C 0
s caeJap4.Scaffold17934   292023 314 +   591668 ---------------------------GCATGATTTag-----taaaggaaaaaaaaattcaataaagtTTTCAGAACCTCGAAGTGGTTCTTTCGGATCCGATCAATGGTTGCGACATTCTCCGCAACGAGATACATGTTCCGACCGTCATATTAATGGAAAGAG---------------------------------------------------------------GGGATTGTTCCTTCACAGTCAAGGTGTTGAATGCCGATAATGCCGGAGCGACCGTTGTGATGGTCACCGATTCTCAAAATTAC------------------------------------------------------GACTT---CCGCGT-------TCGTCAAGATTACGTCAACATGATTCCAGATGAATCTCTAGACCGCGCTGGGATTCCATGCGTTTATATTGCTCCGGTCACCGGGT
i caeJap4.Scaffold17934 C 0 I 110

a score=546.000000
s ce10.chrX              4891135 1 + 17718866 A
s cb4.chrX              10234426 1 + 21540570 A
i cb4.chrX              C 0 I 110
s caeRem4.Crem_Contig0   1773687 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3144920 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I
e caeSp111.Scaffold409    102789 73 -   201088 I

a score=-1336.000000
s ce10.chrX              4891136 26 + 17718866 -TTACAATTTTGTTTCGCTTTTCAAAA
s caeRem4.Crem_Contig0   1773688 26 -  4500979 AGTAC-CTTCTGCTCCACGATTCAGGA
i caeRem4.Crem_Contig0  C 0 I 104
s caePb3.Scfld02_0       3144921 13 +  4147112 GGT--------------CGATATGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I
e cb4.chrX              10234427 110 + 21540570 I
e caeSp111.Scaffold409    102789 73 -   201088 I

a score=-1229.000000
s ce10.chrX              4891162 113 + 17718866 GTTCAACTAGTGAAATTGCTAAGCTTAAAAGCAAG--TAAATATAATTTTGGACAAAAATTATATGTTTCTCTGGATTTTTAAGTTTTTTCAAG--CTGTTTAAAGCGGTATAACTT
s caePb3.Scfld02_0       3144934  78 +  4147112 GCTGAATTAGGAAAA----------GAGAATCAAGGTTGAGCTGAATAGTCTACTAAAA----------------------AAGCATTTGCGAGAATTGGATAATGCG-------TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I
e cb4.chrX              10234427 110 + 21540570 I
e caeSp111.Scaffold409    102789  73 -   201088 I
e caeRem4.Crem_Contig0   1773714 104 -  4500979 I

a score=-25685.000000
s ce10.chrX              4891275 523 + 17718866  
s cb4.chrX              10234537 285 + 21540570  
i cb4.chrX              I 110 C 0
s caePb3.Scfld02_0       3145012 288 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I
e caeSp111.Scaffold409    102789  73 -   201088 I
e caeRem4.Crem_Contig0   1773714 104 -  4500979 I

a score=-1444.000000
s ce10.chrX              4891798 10 + 17718866 ---AAGAACAATT
s cb4.chrX              10234822 10 + 21540570 AAGTATGaca---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    102862 10 -   201088 ---aagaaaatgt
i caeSp111.Scaffold409  I 73 C 0
s caePb3.Scfld02_0       3145300 10 +  4147112 ---Tataatcatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I
e caeRem4.Crem_Contig0   1773714 104 -  4500979 I

a score=-730.000000
s ce10.chrX              4891808 6 + 17718866 TATATC
s cb4.chrX              10234832 6 + 21540570 gatttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1773818 6 -  4500979 TATGTT
i caeRem4.Crem_Contig0  I 104 C 0
s caeSp111.Scaffold409    102872 2 -   201088 ----ta
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3145310 2 +  4147112 ----ca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   292337 110 +   591668 I

a score=34584.000000
s ce10.chrX              4891814 445 + 17718866  
s cb4.chrX              10234838 412 + 21540570  
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1773824 364 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    102874 365 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3145312 375 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   292447 351 +   591668  
i caeJap4.Scaffold17934 I 110 C 0

a score=-3573.000000
s ce10.chrX              4892259 23 + 17718866 GTCTATGACA-A-AGTTGCCAT---TAC
s caeRem4.Crem_Contig0   1774188 22 -  4500979 GTC--TGACA-TTCGTTGCCATGAT---
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold409    103239 11 -   201088 -----------ATTGTGACCAT------
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3145693 21 +  4147112 TTCAATGACA-GTCATGTCCAT------
i caePb3.Scfld02_0      I 6 I 4
s caeJap4.Scaffold17934   292798 25 +   591668 GTCATCGACATATTTTTGCCATGAT---
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10235250 11 + 21540570 I

a score=72335.000000
s ce10.chrX              4892282 216 + 17718866 ----AATGAA----TTTTTC------------AATATGTATGTTTTGAAATGGTGTAGATATGAGAAAAT--GGAACACCAGTGTCC-TATGCTCTTTTCAC-----TTTTTGTC----ATTTGTCAAA--------------TGCGGTGTGG-CTATGGAGCACCACAAGCACT-AGAGAAAGTTTT-------TAATTCTTTAGGCAAATAAAACTC-AGCAAGTCGACCG-CTTTCATTGTCTTTTTC-----TTCCGTTTCCTC----TCACTGCTTT
s cb4.chrX              10235261 196 + 21540570 ----AATAAA----TGCttc------------catgttttttttgcttact-----------gaaaaaatagggaacACCGGTGTCCTATGCGCCTCTTCAC-----TATTTGTT----ATTTGTTGAA--------------AGCGGTACGGTCTGTAG---------AGCACT-AGagaaagtttttc-----gaattctttcaGCAAACAAAACCCAGACCTACCAACCG-TCC----TTTCTCTT--------CCCTTTTCCTC----CTAATGTTTT
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1774224 198 -  4500979 ----aaaaaagttttgcttt------------caatcatttttttct----------------gaaaaat--ggaacgcAGATGTCC-ATTCTTTCCTTTAC-----TGTTTGTT----ATTTGTTAAA--------------TGCGGTGCGA-CTGTAGAGCACC---AGCACt-agagaaagtttt-------gaattctttcagcaAACAAAACCC-GGCCTACCAACCG-CTCGTATTgtctttt--------tccgtttcttt----tcaCTGCTTT
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold409    103251 211 -   201088 ----ATAaatctttttcctttctga-------aacgtttttttttgtctat------------GGAGAAT--CGAACACCGATGTCC-GAAGCTCTTTTCAC-----TGTTTGTT----ATTCGTTAAA--------------AGCGGTGAGA-CTGTAGAG--CT---AGCACT-agagaaagtttt-------gaattctttcagCAAACAAAACCC-GGCCTACCAACCG-CTCTCATTGTCTTTTTC------CCcgtttcctctttctctctgctTT
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3145718 218 +  4147112 ----ataaatattttttttcgacggtATAAATAAGGTCTGTtctgcttgaa------------aaaaaat--ggaacaccGATGTCC-AATGGTCTTTTCAC-----TATTTGTT----ATTTGTTAAA--------------AGCGGTGAGA-CTGTAGAGCACC---AGCACT-agagaaagtttt-------gaattctttcagcAAACAAAACCC-GGCCTACCAACCGCCtctcattgtcttttt-------tccgCTTCCTC--ACTCCCTGCTTT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   292823 232 +   591668 AATGAATAAACCCCTGGTTC------------TGATTGGTTTC------------------------AAT--TCAACAC-GACTTGT-TTTGTCTGTCTCGCTGATGTGTTTGTCAAAAATtcgtcagaaaaaaaaaagaatgagcAGTGCGT-CTGTAGAGCACC---GGCACCGAGAGGCAGCGTTTCGAGTTGAGTTCGTTCGGCAAACAAAACAA-AGCCTGCTCACTT-TGATTATTGTCCTGCTTGCCGCTTTGGTTCGCTC----TCGCTCCATT
i caeJap4.Scaffold17934 C 0 I 18957

a score=4207.000000
s ce10.chrX              4892498 11 + 17718866 ATATATCCATC
s cb4.chrX              10235457 11 + 21540570 ATATATCCACC
i cb4.chrX              C 0 I 112
s caeRem4.Crem_Contig0   1774422  7 -  4500979 ATATTCC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    103462 11 -   201088 ATATATCCTCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3145936 11 +  4147112 ATATATCCATC
i caePb3.Scfld02_0      C 0 I 137
e caeJap4.Scaffold17934   293055 18957 +   591668 I

a score=-593.000000
s ce10.chrX              4892509 24 + 17718866 ATCCATAGTTAGTGACATAGAAAA----------
s caeRem4.Crem_Contig0   1774429 20 -  4500979 ATCCATAGTTGgt----tggaaaa----------
i caeRem4.Crem_Contig0  C 0 I 217
s caeSp111.Scaffold409    103473 28 -   201088 ATAAATa--ccat----ttgaaaatattggaatt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3145947 137 +  4147112 I
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e cb4.chrX              10235468 112 + 21540570 I

a score=686.000000
s ce10.chrX              4892533 83 + 17718866 CGGTTTTTGACAATGAGTCACCG---AGATTTCAAATCGTATTTCTTTTAACAGTGCTGCATTGGGATTTTACTTTAGTTTTTTTT
s caeSp111.Scaffold409    103501 74 -   201088 catttctcaataATTTATGCCCGctcaaacttcaa----------ttttatcAGCGTGAAGTT--TATTTGacatttgtcttcttt
i caeSp111.Scaffold409  C 0 I 233
e caePb3.Scfld02_0       3145947 137 +  4147112 I
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e cb4.chrX              10235468 112 + 21540570 I
e caeRem4.Crem_Contig0   1774449 217 -  4500979 I

a score=0.000000
s ce10.chrX              4892616 648 + 17718866  
e caePb3.Scfld02_0       3145947 137 +  4147112 I
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e cb4.chrX              10235468 112 + 21540570 I
e caeSp111.Scaffold409    103575 233 -   201088 I
e caeRem4.Crem_Contig0   1774449 217 -  4500979 I

a score=653.000000
s ce10.chrX              4893264 171 + 17718866 AAAAAAATTTTTAGAATCCAAACTTTCT---------GAATGCAAATAAAACTTTGTCAAAAATATTTTGATAACTATTTGCTCATTTTAGTACTATAAAACGGTTTTCTTTGCGT---TTAACATGTTGAAATTTTGTGATTTTGCGAAATAAACAACTCAAAAAATAATTTCTAAAAACTA
s caePb3.Scfld02_0       3146084 158 +  4147112 aacagaattttcaaaacaaaaaatttgtcttttgaagaaatcctCCTGAAAACTTATCAAAATTAT---GAT---------CTCAtgt-----cttcaaaatttgtttttcggcATGATTGAAATTGCCGAACTTTATTATTATTGCCAAAACtacatct--aaaaatatttac------ctt
i caePb3.Scfld02_0      I 137 C 0
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e cb4.chrX              10235468 112 + 21540570 I
e caeSp111.Scaffold409    103575 233 -   201088 I
e caeRem4.Crem_Contig0   1774449 217 -  4500979 I

a score=-2037.000000
s ce10.chrX              4893435 32 + 17718866 GTCAATTCAAAATATTTCCC---ACATTGGCACTT-------
s cb4.chrX              10235580 36 + 21540570 gtcaat--aaactttttttc---ataataaaatTTGTTCCT-
i cb4.chrX              I 112 C 0
s caePb3.Scfld02_0       3146242 30 +  4147112 ------------tttcttccgatgttttcaaatttgacacac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e caeSp111.Scaffold409    103575 233 -   201088 I
e caeRem4.Crem_Contig0   1774449 217 -  4500979 I

a score=-1580.000000
s ce10.chrX              4893467 7 + 17718866 CCATCAA
s cb4.chrX              10235616 7 + 21540570 TCTCCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1774666 7 -  4500979 CCATTGC
i caeRem4.Crem_Contig0  I 217 C 0
s caePb3.Scfld02_0       3146272 1 +  4147112 -----a-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   293055 18957 +   591668 I
e caeSp111.Scaffold409    103575 233 -   201088 I

a score=45624.000000
s ce10.chrX              4893474 187 + 17718866 AAAAATGTCTTTTGAATTTGACTCAATTATGTTGCGCTCGTTAGA-----------------T--------------TTCGGTTTCTGTTCAACACACACCATTTTTCCATTTT------AGCGAGGTCAAACCAATTT--------TTCGTTTCAAAAATTTTG------------------ATGCTTTT--AC-----TTTTACTACTACGTTTTATTTTGTGACAGACAGTTGCAAAGTGGAAAAATATGTCTC
s cb4.chrX              10235623 231 + 21540570 AAAA----CTCCTCAACAGCATTCAATTACGTTTCGCttgttaaagtttttttttttcattcttgaaTTTGCGACAATTCAGTTCCTGTTC--TACGCCCCATTCATTATTGTT-CAAACAGCGAGGTCAAGCCAATTTCTTCGCCTTTCTCACTaaaaaaaCATTCGACAATATTT------Ttgcctttcaaa-----ttttactaCCTAGGTTTAC--TATGCTACTTTGTAACTGAGTACG------TATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1774673 221 -  4500979 AAAAGTGCCTTTTGAATTCAACTCAATTATGTTGCGCTCGttagattttttt----------gtgaattcgt-CCAATTTGGTTCCTGTTC--CACGCCCCATTCTGTCTTGTC-CAAACACCGAGGTCAAACCAATTTCTTtcgatttcta---aaaaataaat---acactATTTCACGAATTGCAATC--AA-----TGTTACTACT----TTTAC--TATGCCATTTCGTTACGGAGTATGAA---TTGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    103808 204 -   201088 agaatttccttttcaattcaacTCAATCATGTCGCGCTcgttagaaattttttt--------tcg-----ccaCCAATTTGGTTCCTGTTC--CACGCCCCATTCATTCGTGTCGAAAATAGCGAGGTCAAACCAAT----------Ttctactcaaaaaaattg---gcg-----C------TTGGTTTG--GT-----TCTTAGTACT----ATTACTATATACAACTTTGTTACCTACAAGATA---Atgtttc
i caeSp111.Scaffold409  I 233 C 0
s caePb3.Scfld02_0       3146273 226 +  4147112 aaaaattccttttcaaCTCGACTCAATTATGTTGCGCTCG-cagcatttttttg--------ttgaaatttgacCAATTCGGTTCCTGTTC--CACGCCCCATTCATTCATGTC-CAAACACCGAGGTCAAACCAAT-TCTgtcacctttttttcaaaagcgtAG---ACAATGTTT------TTGGTTTG--GTTGCAGTTTGACTACT----ATTACTATATGCCAGTTTGTTACGGAGTAGATA---ATGTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   293055 18957 +   591668 I

a score=39051.000000
s ce10.chrX              4893661 124 + 17718866 TTATCACT---------CG--TTTTTGATTGCGCTATTATATGT-------AGGTTTAAATTCTATTGTTCACAA-TTAGAGCGTGCGAC-GGATTTTTATTGATCGACCTTGAGG-TTCTGTCAATTG-TTTG-----AATTGTGTCTTA
s cb4.chrX              10235854 131 + 21540570 TTATCAGTATCgtaaaacgtttttttaaTCGCAACGTCGTTTGG--CTTGCAATTCTCCCGTCCATTGTTC------C--TGCGCTACTT-TTCACGCTATTGATCGTccttgacatttttttttgctg-tttagGTTCA--------TTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1774894 134 -  4500979 TTATCAGTATC--AAAACCGTTTTTTCATCGCGTTGTCTTTTGG---------TTTTGCCTGTCATTGTTCACAA-TT--GACGCGTCTC-GCTACTCTATTGATCGTCCTTGAGA-TTTTGTCAGTTG-TTTGGGTTCAAATGTGTGTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    104012 131 -   201088 ttatcagtttc---aAGCG--TTTTTCATTGCGTTGTC-TTTAG----------TTTGCAGGTTATTGTTCGTAA-TC--GACTTGCGACGGCCACTCTATTGATCGTCCTTGAAGTTGTTACCAATTG-TTTGGGTTCAACTGTGTGTTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3146499 132 +  4147112 TTATCAGTGTC---AAACG--TTTTTCATCGCGTTGTCTTTTAG----------TTTGCAATCCATTGTTCATAC-TC--ATCGCGCGAC-GCTACTTTATTGATCGtccttgaaatttttcacaattgttTTGGGTTCAGTTGTGTGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   312012 132 +   591668 TTATCAACCAT----------TTTCTCATCACGATGCAATATCGTTTTTGTTGGTTTGCAAGTCATTGTTCACACTTT--GACGCGCCTC-ACAACTTTATCGATCGGCCTTGAAATGTAGTCCTATTG-TTTGGGTTTC-----GTATTG
i caeJap4.Scaffold17934 I 18957 I 17

a score=-587.000000
s ce10.chrX              4893785 18 + 17718866 TACTGG-TTGTAGAATTTG-
s cb4.chrX              10235985 19 + 21540570 TAATTT-TCGTCGAATTCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775028 19 -  4500979 TACTGG-TTGGGTGAATCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    104143 15 -   201088 AATTGGCTTGTCGAA-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3146631 19 +  4147112 TACTAG-TTGTAAAATTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   312144 17 +   591668 I

a score=194662.000000
s ce10.chrX              4893803 493 + 17718866  
s cb4.chrX              10236004 519 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775047 523 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    104158 484 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3146650 552 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   312161 498 +   591668  
i caeJap4.Scaffold17934 I 17 I 322

a score=796.000000
s ce10.chrX              4894296 3 + 17718866 AAA
s cb4.chrX              10236523 3 + 21540570 Agg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775570 3 -  4500979 GAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    104642 3 -   201088 gaa
i caeSp111.Scaffold409  C 0 I 14
s caePb3.Scfld02_0       3147202 3 +  4147112 AAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   312659 322 +   591668 I

a score=-4235.000000
s ce10.chrX              4894299  6 + 17718866 -----------------------------CTGAAA-----
s cb4.chrX              10236526 12 + 21540570 gga----------------------------ggaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775573 40 -  4500979 ggacttttctaaaattttggcACGTTCTGATGTaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3147205  6 +  4147112 -----------------------------CTGCAA-----
i caePb3.Scfld02_0      C 0 I 494
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645 14 -   201088 I

a score=-2373.000000
s ce10.chrX              4894305 77 + 17718866 ATTTGCAATTTATTTGCAAAAATAACAATTACAA-----TTTTCAAGTTTATTTCAATAATTTAGATAGATTATTTTTTGAA
s cb4.chrX              10236538 52 + 21540570 ------attctctaaaGAATCctaacaaattcaaaattttgctctGGTGCCCTCTGgt------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775613 69 -  4500979 TCTTGCAATCACTATGAAATATTGAGTATTTTGAAACTACATAAAAGGTctcttcaat-------------tattttttcaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645 14 -   201088 I

a score=-1219.000000
s ce10.chrX              4894382 409 + 17718866 TTTCATAACAAATTAAGTTGTTTGAAATTAAACCAGTTGCCAGTTGGAAAATTGTTTAGAGCCATAGCAATTTGATTTAGGCTGTTTAAG-AAATCTTTGAAATTTCCTGAAAAATCAAAAAAAAACCAGCAATTTCCAAAATGACCAATTTTTGAA-----AAACAATTACTGAAAGTATGCAATTTTTACATTTTTAGTTTTTATAAGATCTCGAAGA------GTTTTCCGAAAAAAGTGATTAACAAATAACTACAATTGCGAATTATGCCAAATTCAATTTTTTAAGTTTCGAAAAATTTCGGCAATTTCGGCAGC--TAAAATTTTTGACCGCGTACCTTTTGTTTCACAGTTATCATAGTTCTGAAATTCAACTTTAAAAACATGTTT---CTGCAAATTTTATATTCCAATGCAGTTT
s cb4.chrX              10236590 303 + 21540570 tatagctgaaaatttag------------aattctgCCGTTAGTTGGAAAA---------------GAAATATGC------CTGTTTCAgtgaaactccgaaatttc-------agtatAAAAGTGCAAAGAGGTTCTT---TATCTAAATTTTGTAGTGTGAAACAAACAGT---CTTATGAAATTCAT-CATTTGAGGCATTT--------TCGAAGGAAactcgttttttaaaaatcatttttaaaaagt-----cgattagaaa--------agttatatttttcg-----------------------TCGGCGGCAATGGAATTATTAGC-------------TCTTACAGATAT-------------------TTTATGCAGATGTTtgcttcgaaaattttaaaaacaaagtCAGTTT
i cb4.chrX              C 0 I 101
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645  14 -   201088 I
e caeRem4.Crem_Contig0   1775682   0 -  4500979 C

a score=0.000000
s ce10.chrX              4894791 104 + 17718866 CATTAAATGTGCATTTTTATTCGAACTTATACAAAACGTCATTTCATTTGAATTTTGGCTATTGTCTTGTACAGAAAAATGTTGAAAAATATGGAATTTGTTTA
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e cb4.chrX              10236893 101 + 21540570 I
e caeSp111.Scaffold409    104645  14 -   201088 I
e caeRem4.Crem_Contig0   1775682   0 -  4500979 C

a score=38.000000
s ce10.chrX              4894895 147 + 17718866 AGAGCTTTAGTTGGTTATATTGAATAATTATAAGAACTATTAAAAAACAAATCA---TTATTAAATGCTCAAAAACACAGTTAAAATTTGAAAAACTTGAATTTATTTTTACATATGTTATTCGAGAAAGTTTA-----------------GGTATTTT-------------TTTGAAAA
s cb4.chrX              10236994 171 + 21540570 ACAGTTTTATGGTGTTCCGTTGAAT--TTACAA--ACTGCAGAACAACTAGTGAAATCTGTGAAATCCCCAAAATC-----CGTAAACGGGAAATCCCAGCTCTGTTTCTGTGAGAAGTGTCAAGAAAAGTTCAACCCgcttaatatttttgatattttcgtAATTATTGTGTTTGTAAA
i cb4.chrX              I 101 I 107
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645  14 -   201088 I
e caeRem4.Crem_Contig0   1775682   0 -  4500979 C

a score=0.000000
s ce10.chrX              4895042 104 + 17718866 TGTATTTCAATTCGCACAACGtttaaataaaaataattataaaaacatttaaaattacaaatttatgaaagattttataaatCGTAAAAACAAGAGCTTATACT
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e cb4.chrX              10237165 107 + 21540570 I
e caeSp111.Scaffold409    104645  14 -   201088 I
e caeRem4.Crem_Contig0   1775682   0 -  4500979 C

a score=558.000000
s ce10.chrX              4895146 58 + 17718866 GTTCTTTGGTTTCTTTTCCACATCATTTCTAATACTGTACTGTATTTTAAATAGTTTT
s cb4.chrX              10237272 58 + 21540570 GTTTTAGGAATGCCCACTCAGGtcgcttctgaaattttttcaaattttcatcagTTAG
i cb4.chrX              I 107 C 0
e caePb3.Scfld02_0       3147211 494 +  4147112 I
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645 14 -   201088 I
e caeRem4.Crem_Contig0   1775682  0 -  4500979 C

a score=438.000000
s ce10.chrX              4895204 34 + 17718866 TTTTTTCAAAAAATAACTTTATTTTCAGTCAGAA
s cb4.chrX              10237330 28 + 21540570 ATTATTaaaataa---cttcaaattaACTCT---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3147705 31 +  4147112 TTTCCTCAAGCAATTGTTTCACTTTCATTCA---
i caePb3.Scfld02_0      I 494 C 0
e caeJap4.Scaffold17934   312659 322 +   591668 I
e caeSp111.Scaffold409    104645 14 -   201088 I
e caeRem4.Crem_Contig0   1775682  0 -  4500979 C

a score=182.000000
s ce10.chrX              4895238 2 + 17718866 TT
s caeJap4.Scaffold17934   312981 2 +   591668 TT
i caeJap4.Scaffold17934 I 322 C 0
e caePb3.Scfld02_0       3147736 0 +  4147112 C
e cb4.chrX              10237358 0 + 21540570 C
e caeSp111.Scaffold409    104645 14 -   201088 I
e caeRem4.Crem_Contig0   1775682 0 -  4500979 C

a score=-11676.000000
s ce10.chrX              4895240 48 + 17718866 TGTCTAAACTATTATCTATTATG----------TTCTTCATCAACAAGACCTATTAAT
s cb4.chrX              10237358 31 + 21540570 ----TCTCCCGTTACCTAATCTC----------CTGTT----------ACCCATT---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    104659 34 -   201088 ----tattttaatttttatcttt----------tggtt----------tccctctgat
i caeSp111.Scaffold409  I 14 I 13
s caePb3.Scfld02_0       3147736 19 +  4147112 ------------ATCTTATCATT---------------------------CCACAGAT
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   312983 54 +   591668 ----TGTACTGATTATCATTTTAAATTATGAAATTTCTTatatacaaaattttttttt
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1775682  0 -  4500979 C

a score=459099.000000
s ce10.chrX              4895288  940 + 17718866  
s cb4.chrX              10237389  935 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1775682 1003 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold409    104706 1002 -   201088  
i caeSp111.Scaffold409  I 13 C 0
s caePb3.Scfld02_0       3147759  995 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   313037 1168 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-20662.000000
s ce10.chrX              4896228 120 + 17718866 ---------------GTTCTTTATTCGAATTTATGTAAATTGAAAGTCTTTAACTTTGAGCCTAACTTTT---TATTGCCAGTGGGAATATTTTTCAAG----TTT---GCTTTTATAATGCTAAAATCTTTTTTAAAAAATATT
s caeRem4.Crem_Contig0   1776696  78 -  4500979 ---------------tttgttt--------------------tgtattttaatAGGCTATCCTGATTACTACATTCTGTTTGTCACGGATACATTCAGT----TTC------------------ATGTCCTCTTT----------
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold409    105708  52 -   201088 ---------------GTTCTTC--------------------AAAGTTTC------------TGAtggtt---ttatatt----ttattttatttcaattctcttc---------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3148754  58 +  4147112 ---------------CTTCTTT--------------------GAGGTGTTTAGCGg------tgattgtt---ttttcttggccttgttttctctcaat----ttc---------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   314205 111 +   591668 ATTATTAAatgtataattttttgttcggtTCAGTTTGA----AACATTTATAACATTTatg-tatttctt---ttttttc-------tttttttttatt----ttcttttcttgtctgatttttAATTCT---------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10238324   0 + 21540570 C

a score=-38929.000000
s ce10.chrX              4896348 111 + 17718866 TGAAATGA-CTCGATGTGGAAAATTTGAAAATTTA------CCATAATTTTGTCTGAAAATTTTTTGAAGATGTGTTATAATATTTAGTCAGTTTGGTCTATGGTCTCAACTGACGGT
s cb4.chrX              10238324  43 + 21540570 ------------------TGAgatgggaaaaat----------------tgaattggtAG---------------------------------CACATTTATG-TCTC-------GGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1776774  43 -  4500979 --------------------AACTTTGAATATT----------------CAGTTTGACAGATAT-----------------------------TACATCTCTGATCTC----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    105760  49 -   201088 --------------------atttttctcaattt------------tttcagtttgacaCGTAC-----------------------------TCAACACTTGATCTC--------AT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3148812  45 +  4147112 --------------------agtttccgtttttt------------ctacagtttgACATATGT--------------------------------ATACCCGAT-TT--------AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   314316 100 +   591668 CCATGTGATCTCTTTAGTTAATctaaaaatatttcatttatctttgtattttttttacaattgaATATAAATACATTGTAAAATTGTA-----TGAATTAACGAC-------------
i caeJap4.Scaffold17934 C 0 I 145

a score=-28077.000000
s ce10.chrX              4896459 166 + 17718866 TCTCCGGCCTTTGATTAGTTTGGTTTTTCTTCAGTTTATCACCGACGTTGTTCATGATCTCAACTTTCTCCTGTTTTTTTATTCGATTCATATTCAAA-TTGTTAT---------ACTTTCAACTAATAAATCATTTT----ATTCGACAATCAATTAA---CATTCTGTGAACTTCGA-----------AACC
s cb4.chrX              10238367 167 + 21540570 GAttcttttttgagttctgGAGTATTATCACT-GTGTTTCagt--cttctttttcag--------------------tttcatagATATCAATGATCTCTTGTTGTTCTATATAAATACTTTATTGATATAATATAATAAATTCTTGGAATTCAATAAAAGTAATtttgaaacc----attttttcattgtacc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1776817 113 -  4500979 -ACTTTATTTTGTGTTGTCTGCTATTTTTACt---------------------------------------------ttgtttaaaattcaatgaacT-TTATTG--------ACACATTTTATTGACACAA----------TTTTGGAATATAATCAG------TTCGAAAAC----ATTTCC------AACc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    105809 102 -   201088 TCTTTCGTTTGTAATTTTactgaattt------------------tgtttttcccaATAAAAAC----------AGGTTTATTTATACTA---------TTATTAT----------------------------------------GGAATACATATCG------TATGGAAAC-TCAAATT--------GACC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3148857 131 +  4147112 GATCTCGCTTTTGAtgtttctccatttttaat--------aatgatgtgtttttcaa--------------------tttgttgaaacaaGCTGAAAT-TTAATAT-------AAAATCTTTATTGTCACAA----------TTCTGGAATACAAGCGG------TTTGAAAAC-CAAA--T--------AACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   314416 145 +   591668 I

a score=474415.000000
s ce10.chrX              4896625  928 + 17718866  
s cb4.chrX              10238534  952 + 21540570  
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   1776930  991 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold409    105911  919 -   201088  
i caeSp111.Scaffold409  C 0 I 35
s caePb3.Scfld02_0       3148988 1011 +  4147112  
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold17934   314561 1033 +   591668  
i caeJap4.Scaffold17934 I 145 C 0

a score=0.000000
s ce10.chrX              4897553 27 + 17718866 GTGTTCCCCCCCCCCCCCCCCCCGTTC
e caePb3.Scfld02_0       3149999 31 +  4147112 I
e caeJap4.Scaffold17934   315594  0 +   591668 C
e cb4.chrX              10239486 29 + 21540570 I
e caeSp111.Scaffold409    106830 35 -   201088 I
e caeRem4.Crem_Contig0   1777921 25 -  4500979 I

a score=142415.000000
s ce10.chrX              4897580 212 + 17718866 CCCAATCTGTAATGCAAAGAAAAGAAATGCGAGAATTCC---AAATTCCTTACCTGAAATTCGACGGATTCAATCTTCCTTTGACCGAAATATTGCGCATGTGATGGTCAAGATCACAATCGCAGAGTTCCATTATTAAACAGCAGAAAAAGTCGTCGAAATTGCAAATGTCTAGTACTCCGACTAGATATTCACTGTTGAGTTCTCTGAAAAAT
s cb4.chrX              10239515 195 + 21540570 --CAATCTCTTATGCAAAG------AATCTTAAACAGCCTATAGA---CTTGCCTGAAATTCGATTGATTCAATCTCCCTTTCTCGGAAATGTTTCGCATATGGTGGTCTAGATCACAATCGCAAAGTTCCATAATAAGACAACAGAAGAAGTCGTCATAATTGCAAATGTCTAGTACGCCAACCAAATACTCCGAGTGGAGTTCT---------
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   1777946 197 -  4500979 CTCAATCTGTTATGCAAAG------CATCTTAA---------AAA---CGTGCCTAAAATTTGACGCATTCAATCTCCCTTTCTCCGAGATGTTCCGCATGTGATGGTCAAGATCACAATCACAGAGTTCCATGATGAGACAACAATAGAAATCGTCGAAATTGCAGATGTCAAGTACTCCGACCAAATATTCACTGTGtagttctctgaaaatc
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold409    106865 199 -   201088 CTCAATCTGTTATGCAACA------CATCTAAAAA-------GAA---CGTGCCTGAAATTTGATGGATTCAGTCTCCCTTTCTCTGAGATGTTCCGCATATGATGGTCAAGATCACAATCGCAGAGCTCCATGATTAAACAACAGAAATACTCATCATAATTGCAAATGTCTAGAACACCAACAAGATATTCACTATGTAGatctctgaaataa
i caeSp111.Scaffold409  I 35 C 0
s caePb3.Scfld02_0       3150030 199 +  4147112 CACAATCTGTCATGCAAAG------AATGTTTGGA-------AAA---CGTGCCTGAAATTTGATGGATTCAGTTTTCCTTTGTCTGAAATATTTCGCATGTGATGGTCAAGATCGCAATCGCAGAGCTCCATGATAAGACAGCAAAAGAATTCGTCGTAATTGCAAATGTCTAACACACCAACCAAATATTCGCTGTGaagttctctgaaaatt
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold17934   315594 170 +   591668 ---------------------------------------------TTTCATACCTAAAATTAGCAGGATTCAGGCACCCTTTGACTGAAATATTGCGCATATGATATTCCAGATCGCAATCGCACAGCTCCATAATCAAACAGCATGTGAAATCATCAAAATTACAAATGTCAAGAACACCGACAAGATATTCACTTTTAAGCTCCCTGAAAAGT
i caeJap4.Scaffold17934 C 0 I 26

a score=-3448.000000
s ce10.chrX              4897792 19 + 17718866 CTTATAGTAGAAAGTTTCC----------
s caeRem4.Crem_Contig0   1778143 19 -  4500979 ----------tgaactGTCAAAAACTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    107064  9 -   201088 ----------aatggtTCC----------
i caeSp111.Scaffold409  C 0 I 20
s caePb3.Scfld02_0       3150229  9 +  4147112 ----------aatcATTCA----------
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17934   315764 26 +   591668 I
e cb4.chrX              10239710  0 + 21540570 C

a score=-2817.000000
s ce10.chrX              4897811 24 + 17718866 AACAAAATTAAGAGATACAAAACT--
s caeRem4.Crem_Contig0   1778162 12 -  4500979 -------------ATGACATTTCAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3150247 11 +  4147112 ---------------GTCATGTCTGC
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold17934   315764 26 +   591668 I
e cb4.chrX              10239710  0 + 21540570 C
e caeSp111.Scaffold409    107073 20 -   201088 I

a score=912.000000
s ce10.chrX              4897835 3 + 17718866 AAA
s caeRem4.Crem_Contig0   1778174 1 -  4500979 --A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    107093 3 -   201088 aaa
i caeSp111.Scaffold409  I 20 C 0
s caePb3.Scfld02_0       3150258 3 +  4147112 AAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   315764 26 +   591668 I
e cb4.chrX              10239710 0 + 21540570 C

a score=230334.000000
s ce10.chrX              4897838 373 + 17718866 ACTTACTTGATCATTTTCAATTCGCTCTCCTTCACGTGCACTTTGAGCATCCTTTTTATGGCAATCTGAA--ATAATACTCC-----TCATATAACAA------------ACGGGA----TATAACGTTTTT-------TACCGAATTGCTAGAATCCTTCAAGCTCCCCTTGAACACTGCTCCAAATGCTCCCATCCCAATCATGGCGTCCACTGAATCCATATACTCGTATTTTTCATCTAATATAATTTGCTTGTTGGTGAAGTCGGGCATCAAAAATGCACTGGCCGTTGAGGAACGATGAGAGGCGCAATGAATAACCATCTGCA------------------------------AAAA--AAAAATG---TGAA---TTATTTTATTGAGCCG-----GACACTTGG--------TATTGTCTGGTGCAAAA-----ACAACGTCATCAAATT
s cb4.chrX              10239710 399 + 21540570 ------TTAATTAACTTCAACTCGCTCTCTTTTACGTGTACTTTGAGCATTCGTTTGATTGCAACCTGAA--ACGATGGGATTTCAGTCACACGACCAAA---------AACGGAAATGGTGTCAAATTTCC------ATACCGGATCGGTGGAATCTTTCACGTTTCCCTTGAAAACTGCACCAAATGCACCCATGCCGATCATCGAGTCCAAGGAATCATTATATTCGTATTTATCCTccaattttatcaatttatttgaaaagtcTGGCATTAAAAATGCACTAGCTGTTGAGGAGCGATGAGATGCACAGTGAATAAccatctgga------------------------------aaaa--aggaatattCTAGA---ATAGCTAGAAAAACTGTATC-TATGTTTTGTTGGAGTCTATTGTGTGGTGCAAAAAGAATAC-ACGTCATGGAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1778175 407 -  4500979 ACTTACTTAATCATCTTTAATTCACTTTCTTTTACGTGCACTTTGAGCATTCTTTTTATGGCAACCTGAA--ACTAT----------TCACATGACGAAA---------GAAGAGA--GGCATTAAATTTCA------ATACCACattatctgaatttttgacgtgtcctttgaaaactgcTCCGAATGCACCCATACCAATCATGGCGTCCAAAGAATCATTGTACTCGTATTTATCTTCTAATATTATATCTTGATTGGTGAAATCTGGCATGAGAAATGCGCTGGCTGTTGATGAACGATGGGAAGCACAATGGATAACCATCTGGaat---taaattatg-----aaaaatcagaGAGAA--AAACGTATTTCA-A---ATAG--AGAAGAGCTATCTG-GTTGGTTCGTTGGATCCTATTGTCTGGTGCAAAG-----AT-ACGTCacgaaata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    107096 414 -   201088 acccACTTTATCATCTTCAATTCGCTTTCTTTTACGTGCACTTTGAGCATTCTTTTAATGGCAACCTGAA--ACGATGGTCA-----TCACATGACGATG----------CAAGta----tatcaaatttca------atacCAGATTATCCGAGTCCTTGACGTTTCCCTTGAAAACAGCTCCAAATGCACCCATTCCAATCATTGAATCCAAAGAATCATTGTATTCATACTTGTCCTCTAAtgttatatttttgtttgtgAAATCAGGCATTAAAAATGCACTGGCTGTTGACGAACGATGGGAAGCACAATGAATAaccatctgaaaa-aggaaataaag-----CAATTTGTCAAAAACCTAAGAATCTTGCAAAAG-ACAGTAAATAAGACGA-----GCTGTTTTGATGGAGCCTATTGTCTGGTTTAGAA-----AT-ACGtcatgaaatt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3150261 413 +  4147112 ACCCACTTGATCATCTTCAATTCCGATTCTTTTACGTGCACTTTGAGCATTCGTTTAATGGCAACCTGAA--ACTTTGACCG-----TCATATGACAATG---------AAAagaa----tatcaaatttca------atacCGGATTATCCGAATCCTTCACATTTCCCTTGAAAACAGCTCCAAATGCACCCATTCCAATCATGGAGTCAAGTGAATCATTGTATTCATACTTTTCTCCTAATAGTATGTCTTTGTTGGTGAATTCTGGCATTAAAAATGCACTGGCTGTAGATGAACGATGAGAGGCACAATGAATAACCATCtggaac-aataaaaaatg------aatt--tcaaagaa--aagaaac---caaagGAATATTGAATAGAATGAGATTGGATGTTTTGTTGGAACCGATTGTCTGGTGCaaaa-----at-acgtcataaaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   315790 428 +   591668 GCTCACTTGATCATTTTCAATTCACTTTCTTTCACGTGCACCCGGAGCATTCGTTTGATAGCAACCTAAAACACAATGTTGG-----TCTTGTGACGACACAAAAATTGGATGGAG----GATCGAAATTCAATACACATACCGCATTGTCCGAGTCTTTCACATTGCCCTTAAAAACAGCTCCAAATGCACCCATACCGATCATTGAGCCAAGAGAATCAGTGTACTCGTATTTGTCCTCGAGCACCACGAACTTGTTGGAAAAGTCGGGCATTATGAAGGCACTGGCTGTAGAGGAACGGTGAGAGACACAATTGATCACCATCTGTAAGAAATAAACGGGGTTCAATGattttggaagaag--aagaaga----aga---aaaaaaaagagatgaa-----attggtttttttgaacC--TTGCAGGGTGCaaaa-----aa-aCGTCATCGAATT
i caeJap4.Scaffold17934 I 26 I 443

a score=9421.000000
s ce10.chrX              4898211 263 + 17718866  
s cb4.chrX              10240109 461 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1778582 472 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    107510 414 -   201088  
i caeSp111.Scaffold409  C 0 I 1234
s caePb3.Scfld02_0       3150674 456 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316218 443 +   591668 I

a score=-1404.000000
s ce10.chrX              4898474 4 + 17718866 GGGA---
s cb4.chrX              10240570 5 + 21540570 --Cactg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779054 2 -  4500979 --ca---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3151130 2 +  4147112 --ga---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316218 443 +   591668 I
e caeSp111.Scaffold409    107924 1234 -   201088 I

a score=2730.000000
s ce10.chrX              4898478 3 + 17718866 AAA
s cb4.chrX              10240575 3 + 21540570 aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779056 3 -  4500979 aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    109158 3 -   201088 aaa
i caeSp111.Scaffold409  I 1234 C 0
s caePb3.Scfld02_0       3151132 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316218 443 +   591668 I

a score=51626.000000
s ce10.chrX              4898481 125 + 17718866 AAAGTAAACACAGATGAGGTCAGCTTAACGTTTTTAAATAAAGCAAAGCACCCA--ACAGAGACAGAAAAAA---ACA-------GAAGAAATGTTTGTTG-------AGAGTA--------GAAAAGAGAGCAAAAA---GGAAAG----------------GAAA-CGAG
s cb4.chrX              10240578 160 + 21540570 aaagtaaacatAAATGAGGTCAGCTTAACGTTTATAAATAAAGCAAAG-----GCAGTAGAGACGAAAAAT------ACAACTGGGACAAAATGTTTGCTTCTCGGGAAGAGGAGGACCGAAGAAAAGAAAGCAAAAGCACCGAAAGAATACGTCATTCTTG-AAAATCGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779059 138 -  4500979 aaagtaaacacAAATGAGGTCAGCTTAACGTTTATAAATAAAGCAGAGCACCCACCGCTGAGACAAAAAAC------A-------GACTGAATGTTTATtc-------agagaag-------gaaaagaaagcaaaaaaaaggaaaa---acgtcactcctg-aaaa---aa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    109161 131 -   201088 aaagtaaacacAAATGAGGTCAGCTTAGCGTTTATAAATAAAGCAAAGCACTCACCgcaaagacaaaaaaac---aga-------atgaaaatgtttgcTC-------GGA-----------G-GAGGAAAGAAAGCG------AAAAATACGTCATTCCCC-aaaa-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151135 130 +  4147112 aaagtaaacacGAATGAGGTCAGCTTAGCATTTATAAATAAAGTAGAGCACCCACCgcagagacaaaaaaa------a-------aactaaatgtttgctc-------cga-----------gaaaagaaagcaaaaa------aagaatacgtcattccccaaaaa-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   316661 119 +   591668 AAAGTAAACATTTTTGGGGTCAACTGAAAGATTATAAATAAACCAGAG------CTGGCGAGAAAAGAAAGTGGGAAA-------GCCTAAATATTTGTTT---ATGAAGAAAggc------ggaaagaaaaaaaata------gag-------------------------
i caeJap4.Scaffold17934 I 443 I 228

a score=15969.000000
s ce10.chrX              4898606 36 + 17718866 TAGGAGGAGGTG-CGT---AAAAA-TGCCAAAAAACAATAG
s cb4.chrX              10240738 41 + 21540570 CAGAGGGAGGTGCCGCCGTAAGGACTGCCTAAAAACAATAG
i cb4.chrX              C 0 I 78
s caeRem4.Crem_Contig0   1779197 37 -  4500979 acgaaggagGTGCCGC---AAAGACTCCCT-AAAACAATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    109292 37 -   201088 -aaaaGGAGGTGCCGT---AACGACTGGCCAAAAACAATAG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151265 36 +  4147112 -aaaaggaggtgCCGT---AACGACTGGCT-AGAACAATAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316780 228 +   591668 I

a score=2280.000000
s ce10.chrX              4898642 7 + 17718866 AACATGT
s caeRem4.Crem_Contig0   1779234 7 -  4500979 TAAGTGT
i caeRem4.Crem_Contig0  C 0 I 121
s caeSp111.Scaffold409    109329 7 -   201088 TAAGTGT
i caeSp111.Scaffold409  C 0 I 123
s caePb3.Scfld02_0       3151301 7 +  4147112 TAAGTGT
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold17934   316780 228 +   591668 I
e cb4.chrX              10240779 78 + 21540570 I

a score=0.000000
s ce10.chrX              4898649 529 + 17718866  
e caePb3.Scfld02_0       3151308  51 +  4147112 I
e caeJap4.Scaffold17934   316780 228 +   591668 I
e cb4.chrX              10240779  78 + 21540570 I
e caeSp111.Scaffold409    109336 123 -   201088 I
e caeRem4.Crem_Contig0   1779241 121 -  4500979 I

a score=191.000000
s ce10.chrX              4899178 2 + 17718866 GA
s cb4.chrX              10240857 2 + 21540570 ga
i cb4.chrX              I 78 C 0
e caePb3.Scfld02_0       3151308 51 +  4147112 I
e caeJap4.Scaffold17934   316780 228 +   591668 I
e caeSp111.Scaffold409    109336 123 -   201088 I
e caeRem4.Crem_Contig0   1779241 121 -  4500979 I

a score=241.000000
s ce10.chrX              4899180 34 + 17718866 AAAAAAAACGCGAAATATGAATTTCGAG-TCAAAT---------
s cb4.chrX              10240859 40 + 21540570 aaaaaaaacctgaaccCAGTCTTTGGGTTTCAAGTGTTTT----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3151359 28 +  4147112 aaaaaaaacttga----------------ccaagtgtttttcga
i caePb3.Scfld02_0      I 51 I 6
e caeJap4.Scaffold17934   316780 228 +   591668 I
e caeSp111.Scaffold409    109336 123 -   201088 I
e caeRem4.Crem_Contig0   1779241 121 -  4500979 I

a score=1710.000000
s ce10.chrX              4899214 16 + 17718866 TCCGTTTTCCCAT---CAA
s cb4.chrX              10240899 16 + 21540570 TCCATTTCCCCATCAT---
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold409    109459 13 -   201088 TCTAGTTTCCCAT------
i caeSp111.Scaffold409  I 123 C 0
s caePb3.Scfld02_0       3151393 13 +  4147112 tctagtttcacaT------
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17934   316780 228 +   591668 I
e caeRem4.Crem_Contig0   1779241 121 -  4500979 I

a score=40691.000000
s ce10.chrX              4899230 355 + 17718866 ACCCAATGACAAGGAAGTAG----TCT------------------CGAGGATTAATGAAGCG-AGGAAAATAAAAGTTAGACAAAAGATAG-AAAAACATGAGAACCGTGGAGCAAAGACTCGGTCATCTGGAAAGCATCTACAGTCAGCTTCTTGGAAGCTTGATGTACTTACCAAAAAGT-----GAAAGAAAAAAGAAATGAGCAGAAAAAGATGGAAAGGAGGATATAAGG---------CTCAAT-----TGAATTCTAAGAAAATT----------------GAGTGCGTTTCGAGTTCTTCGGAAAAAAGCTGGTCCTTTTCAAAAGAAAGAGAAG------GAGAAAGAGTAAAGAAC-GTT--CTT-TGGGATAA---AACTG--------CAAAAAAAAAGA-GAAAACGGATGAATAAATGAATA
s cb4.chrX              10240916 343 + 21540570 AACTG-AGACAAGGAAGTGG----TCccgaggaaaaaaagaaattcaaggaTTAATGG--CGCAGGAGAGTatggagaaaacaaaaaaaag-caaaac-------------aaaaGAGATTCGGTCATCTGGAAATCCCTT----------------------------------ATCGagt-----aaattgacaaaaaag-----acaaaaaaatggggaaaaagaaatagaagtaagaagaagaagt-----ctatTCCGGGCGAAATCGAGTAATA--------GAGTATATCCTGGGTGCctctgagaat------------ttgaaaaaaactgagt-tACGCAAAAAAGGCTAAAGAGCAATT--TTAGTGGACTGACTGAGCTTCTGAGCCGCATGGGGAAAGCGAAAGATAAATAAATATATGAATG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1779362 320 -  4500979 ATCTGAAGACAAGGAAGTAa----tcc---aaaaagaaagaaattcaaGGATTAATGGGTCGGGAGAGAGTAaggaagaaacaaaacaaaa-caacat----------tgGAGCAAGGATTCGGTCATCTGGAAACCTCTT---------TTCTCAG------------------ATAGAGT-----AGattgacaaaaa------------------gaagaaaagagatataa--aataaaatgtagTTCATCTtatttctatgaaaatgaagttaTC--------GAGTACATTCTGAGTACTTCCGAGAAA------------TTGGATTCCATTGAAT---------AAAGAGTAAAGAAC-GTT--TCAGTGGGCTGAGCTAAC----------CCTgcagaa----aaagataaataaatatatgaATA
i caeRem4.Crem_Contig0  I 121 C 0
s caeSp111.Scaffold409    109472 306 -   201088 --CGAATGACAAGGAAGTAg----tcttgagaaaaaagggaaattcaaggattaatggggcg---------agaagaaagaaaagaaaaagacaacaa-------------atgaaagatttggtcatctggaagagtag-----------------------------------aaaaagtaaattacattgaaagaa-------------------gaagagaagatatGAAA----------CTGGG-----TTCCTTCTGGGAAAATTGAGTAAGC--------GAGTACATTCCGAGTACTCTCAAAACAT-----------TTGGAAGATATTGGGCCCATagaaaaaagggcagagaac-gat--tttctaggataa---aacta--------gatagagaaagaggaaaataaaaaaatatatgaata
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151406 318 +  4147112 --CCAGAGACAAGGAAGTGGTTGttcccagaaaaaagaagaaattcacGGATTAATGGGGCA-GGgagagtagaaaaaaaacagaaaaaagaaaacaa----------tg-agtAAAGATTTGGTCATCTGGAAGACTAT-----------------------------------GAAGACT--ATGggaatgaggaag-------------------aaaataaGGATATGGAA-----------TGGA-----T------TGGGAAAATTGAGTCAGCGAGAAATTGAGTGCATTCTGCTTGCCCccagaaaata----------ttcaaagatATTGGtcttattgaaaaaaggcTAAAGAAC-GTTGGCTTAAAGGCTAA---GAC----------Gctgcaaaaaga--aagataaataaatatatgaaTA
i caePb3.Scfld02_0      C 0 I 100
e caeJap4.Scaffold17934   316780 228 +   591668 I

a score=-7795.000000
s ce10.chrX              4899585 62 + 17718866 ---AATATCCTCAA---GGAGAA----AACA-GAGCGCCTATAAATTATTATTATTTTCA----------CAAGA-----AAATGTGA------------
s cb4.chrX              10241259 86 + 21540570 ACTGATGATGTGAAAATACGGAA----GCCATTATAGTGTATCTCCCGAAATTTCTGGAT----------CCATATCCACGCCCATTAGAACAAAATCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779682 76 -  4500979 GTTGATGATGTGAA---ATAGGA----GGCTTGAAAGCCAGAATGCCGAAATTTCTAGAA----------AGAGA-----GCCCATTATAACAAG--CAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    109778 88 -   201088 tATGATGATGTGAA---ATAAGAAGCCGGCCCAAACGCCGAGA---agaaataactgaaaaactgGGTTCCGAGA-----GCCCATTATAACATCCTCA-
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3151724 100 +  4147112 I
e caeJap4.Scaffold17934   316780 228 +   591668 I

a score=14538.000000
s ce10.chrX              4899647 18 + 17718866 ACTGACTCATGGTCTTTT
s cb4.chrX              10241345 18 + 21540570 ACTGACTCATGGTCTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779758 18 -  4500979 ATTGACTCATGGTCTCCT
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold409    109866 17 -   201088 -CTGACTCATGGTCTTTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151824 18 +  4147112 ACTGACTCATGGTCTTTT
i caePb3.Scfld02_0      I 100 C 0
e caeJap4.Scaffold17934   316780 228 +   591668 I

a score=-2597.000000
s ce10.chrX              4899665 6 + 17718866 TTCTAG-----
s cb4.chrX              10241363 8 + 21540570 ---ACGACTAA
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold409    109883 1 -   201088 -----G-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151842 1 +  4147112 -----G-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316780 228 +   591668 I
e caeRem4.Crem_Contig0   1779776 26 -  4500979 I

a score=5046.000000
s ce10.chrX              4899671 21 + 17718866 --------GGAG----------------CATCTGGATATCAG-----AGC
s cb4.chrX              10241378 18 + 21540570 --------AGAG----------------CATCTGGATAG--------AGC
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1779802 19 -  4500979 --------AGAG----------------CATCTGGATATC-------AGC
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold409    109884 50 -   201088 GGagcaaaagagaaagaaagagaaaacccATCTGGATATCacgaaaaaac
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151843 36 +  4147112 GGAGCAAAGGAGAGAATAG---------CATCTGGATATCAC-----AAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   316780 228 +   591668 I

a score=146484.000000
s ce10.chrX              4899692 253 + 17718866 ACC------GAACAGATGATCACAACTTGTGC-G-ATGATACGGGAAAAGAA----ACGAAATAGA--------AAAAAGCCGCGATGTCTGCAATCTCTCCCTCTTCAACATTCACCCCCACGATTCTCACTTTGAGCTATGACGTAGTGAGAGCGGTCTGGGTCTACA---TGCTGAC-----GCGACCCCCCCCCCCCCCCCCCCTCTTCTCTTACTCTGCTTCTCCCGAGT--CTTTTCTTCGT----------TTTTTTCTATTCAATTCATTTACATTTTATTGC---------------TT
s cb4.chrX              10241396 273 + 21540570 ATTTCATCTGAACAGATGATCAGAACTTATGTGTGATGATATGGG-AGTGAA----GAGCAATCGagaagcaagaaaaaattg---tGTCTCTTTTCTCCGCCCTTTCAACATTCACCCCCTCGATTCTCACTTTGAGCTGTGACGTAGTGAGAGCGGTCTGGGTCTACACTCTGCTGACGACCGGCGACcccatctcttcttctttc-tttttcgt-------------tgagc--tttt-tttctt----------cgttttttattcaattcattttcattttattgctgtttcggctgctcttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1779821 244 -  4500979 CTT-----CGAACAGATGATCAGAACTTGTGC-TGATGATATGGGAAGTGAG----aagcaatttc--------aaaaaacga---tgtCTACTGTCTCTGTGCTTTCAACATTCACCCCCTCGATTCTCACTTTGAGCTGTGACGTAGAGAGAGCGGTCTGGGTCTACA---TGCTGAC-----GCGacctcctccttttttcttttatttctcat-------------tgagc--ttttccttcgt----------ttttttcttttcaattcatttacA-TCAATTGCTTTTGC---------TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    109934 231 -   201088 ttt------gaacaGATGATCAAAACTTGTGC-T-ATGATACGGGGAGAAGCaaggaagcaaaaaa--------agaaaaccg--aCGTCTGCTATCTCTTTGGTTTCAACATTCACCCCCTCCATTCTCACATTGAGCTGTGACGTAGAGAGAGCGGTCTGGGTCTACA---TGCTGAC-----GCGACCCCTCCC--------TTCATTTCTCGT-------------TGagc--tttttcttcg------------tttctcgATCCAATTCATTTACA-TTTATTGC---------------TT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3151879 229 +  4147112 TTT------GAACAGATGATCAGAACTTGTGC-T-ATGATATGGGGAGTGCC----gagcaataga--------aaaaaacca--ttgtcTACTATCTCTTCTTCTACAACATTCACCCCCTCGACCCTCACTTTGAGCTGTGACGTAGTGAGAGCGGTCTGGGTCTACA---TGCTGAC-----GCGACCGCTCCC---------TCATTTCTCGt-------------tgagctttttttcttcgt-----------tttttctattcaattcatttACA-TTTATTGC---------------TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   317008 223 +   591668 ------ACAGCACAGATGATTGAGTTTTGTTc-g-aaaatacggaaaaaagg----gggcaa------------aaaaaattg---cgtctGCTGGCTCCGCGCCCTTAACATTCA-CCCCTCAATTCTCACTTTGAGCTGTGACGTAGTGAGAGCGGTCCGGGTCTACA---TGCGGGC-----TCGACG------------------AGGCTCGT-------------Tgagc--tttttcttcttcttcttcttcttcttcctatTCAATTCATTTACA-TTTATTGC---------------TT
i caeJap4.Scaffold17934 I 228 I 1609

a score=13801.000000
s ce10.chrX              4899945 52 + 17718866 CATACGGA---CC---------------------AAGAAGAG-------------------CTTGCGCA--CAGCAATTTTTTAAGGCTAAAGAGCA
s cb4.chrX              10241669 86 + 21540570 tcttcaAAGTGTCGCTC-GAGAAATTTgcgaaggaaaaggaaaatt-------ctcttttctttgaACTCACAGCAATTTTTTAGGACTAAAGA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1780065 82 -  4500979 TATACGGAGTGTCCCTCTAAGAAATTCAAGGGGAAAAAGcag-----------ctctttt-ttcaaact--cgGCAATTTTCGA-GACTAAAGAGCA
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold409    110165 88 -   201088 CTTACGGAGTGCC------AGAAATTGAAgagcgaagaagaagaaaaaagagcgcccttt-ttcaaact--caGCAATTTTTTGAGGCTAAAGAGCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3152108 88 +  4147112 CTCACGGAGTGCC------AGAAATTCAAGGGCAAATGGAGAAAATTATTGgccccattt-ttcaaact--cagcAATTTTTTGAGGCTAAAGAGCA
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17934   317231 1609 +   591668 I

a score=-4690.000000
s ce10.chrX              4899997 20 + 17718866 CCCGGCTGGTTTAAATGCTC-----
s cb4.chrX              10241755  8 + 21540570 ------------CTGGGCTC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1780164 13 -  4500979 ------------TTCGGCCCTATTA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold409    110253 20 -   201088 ---GGCAGTGCACAggaatccat--
i caeSp111.Scaffold409  C 0 I 10
e caePb3.Scfld02_0       3152196 22 +  4147112 I
e caeJap4.Scaffold17934   317231 1609 +   591668 I

a score=54833.000000
s ce10.chrX              4900017 470 + 17718866  
s cb4.chrX              10241763 486 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1780177 463 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 97
s caeSp111.Scaffold409    110283 442 -   201088  
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3152218 493 +  4147112  
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I

a score=-12338.000000
s ce10.chrX              4900487 107 + 17718866 CCCTGAC---GCCTTGAGAATTG--TCTAGCCGTAATTTATTTCTGG---AATATGAATATAAATATTTTTTTGGCGGTTCATTTC---TTGAAATA---------TGACAATTTCGATATGTATTG
s cb4.chrX              10242249  73 + 21540570 --Taaac---tttt------ataattttagcAACAA-----AC--GGTGtgat------ggaaattttt------tgaaacatttc---tgaaaaaa---------tgaaatttc------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    110725  87 -   201088 ----TATGTAGTCT------ATG--TTTAG-----------ACCTGG---TCTCGGatatgaaatattt--cagcTCCAATATTCT---AGAAGACAAGAACACGGGGGCAATGTtta---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3152711  86 +  4147112 ----TAC---GCCt------atg--tttagaaaaaa-----acctggtgttatctagaaaaaaacattc--aaactgGAATATTCTCTCAGAAAAC----------TGacattttata---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e caeRem4.Crem_Contig0   1780640  97 -  4500979 I

a score=28635.000000
s ce10.chrX              4900594 249 + 17718866 TGTTCTCTGTTTTCCGCTTTTGTTTTCCT------TTTTCAG----TTTACCAAGTCACGCA-------TGTGGCT------GATCGAATTTCAGAAG--------G-----------------------TTCTCAAATATCTCAAAAGTGTAAGCTACCTTATCCATTTCCACATCTACCGACTCGTCGTCCTCGTTGGTAACCAGCATAGATGGGATGTCAGCAGCCATTG-AATATCTGAAA-------GAATATTTAGTTGGCACATTGAG-----AAATTTGAAA--------------------AAAGAACA-----TGATTTCAAGAACACAAC
s cb4.chrX              10242322 275 + 21540570 --tttccatttttcttgttcttctgt--t------tcttcag--------------AACACC-------CATGACCTTGATgtatcaagtttcaaaaagagcttgtt-----gtaaaaaatatgaagaaattTTCTGATCTCTGA-----AATCAGTACCTTGTCCATTTCCACCCTCACAGCCTCGTCGTCATCATTGATGAGCAGCATCGAAGGAAGTTCAGCAGccattgaaaaatctgaaaactacatacattttcagata--ctatacga-----aaatctgaaat-----tgtggTG-------AAAGAAAG-----AGATTT-AAgtagacaat
i cb4.chrX              C 0 I 393
s caeRem4.Crem_Contig0   1780737 277 -  4500979 TGTTCTCCTTGTTTGTGTTTTGTTAT--TCGATTGTTTTCAGTAGTT--GCAGAGCCATTCT-------CATGACCTCCCTATATCaggtttcaaaaa--------t-----ggagagga-------AAACTCTCAAATGTCTGA-----AATCGTTACCTTATCCATTTCAACCTCTACGGACTCCTCGTCGTCGTTTGTCACAAGCATTGAAGGGATCTCGACATTCAttg-tcaatctgaaa---------atattcaga------atatga-----GGGCAAGAAATGAC-GTGAGGTGGGAACATGAATAATG-----AGACGA-Aagaaagaaac
i caeRem4.Crem_Contig0  I 97 C 0
s caeSp111.Scaffold409    110812 239 -   201088 tgttttctg-------------------t------ttttcag-------gCACAGTCATACCAACAACATATGACAtttgaatatcaaatttctggtt--------t----------------------tttctcagatGTCTGAAAACGAATCGTTACCTTATCCATTTCCACCTCCACAGACT------CGTCGTTAGTCACTAGCATTGACGGAATTTCGGCAGACATGa-gtaatctgaaa---------atat---gatg----atGCGGAACATAAATAAGtaatgag----------------aagaaatgtGCTAAGACCG-GAGAACATGAC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3152797 297 +  4147112 tattttttgttgtttt-ttttctcgt--t------ttttttgttattttgcaCAGTCATACCAACAACATATGATCTCAGAAtatcgaatttcagaat--------tttcattcaaaattttctcgaaatttctcagATGTCTGAAATGAAATCGTTACCTTATCCATTTCAACGGTCACGGACTCCTCAGCATCATTTGTCACAAGCATCTCTGGGATCTCAGCGGACATAt-ttaatctggaa---------aaat---gatg----ttaTGG-----GAATGAGGAATGAGTGTTACGTGTAA----AAATAATGTGGTAAGATCG-AAGAACGGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I

a score=2311.000000
s ce10.chrX              4900843 72 + 17718866 GATACGG--CTTTATCTGAAAGAAATAATTTGTGTTTTTCTATTTATGAA---AATATCGTCGTAAAAGTATATGCT
s caeRem4.Crem_Contig0   1781014 65 -  4500979 -gaaaga--aTTTATATA---TAGATGCTCTTTGTT------GTTATCGAACAAAAACAGTCAAGAAGGCAAACACT
i caeRem4.Crem_Contig0  C 0 I 157
s caeSp111.Scaffold409    111051 51 -   201088 -----GT--GGTTATATA------------TCGGAT------TTTGGGAAAC-AAAGCAATCATGAAAGCAAACACT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153094 58 +  4147112 -----GGAAGTTTATATA-------TGCTCTTTGTT------TTTGGGAGAC-AAAACAATCATGACGGCAAACACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e cb4.chrX              10242597 393 + 21540570 I

a score=-6954.000000
s ce10.chrX              4900915 161 + 17718866 ---TGCTCG-GCAGCTTCTTGTCCAAGTTTAGCCCAAAAATA---TTAACTTTGATCAGATATTGGAAAAAACTTGGGCAAAACTTCTGCAAGAGTTGGGTAAGACTCGAGCAAAAGTTGAGCAACACTTTGCCAAGACTTGGTTCAGGCTCTACACAAGCTTAACCC
s caeSp111.Scaffold409    111102  98 -   201088 GGATACTGT-GGGACTGGTTATCA------GACataaaaaca-ttcgaaaacaagatag------aaaaaaaatggagagaaaaagc--------------aattttccAGTATA-----------------------------CCACGTTAT---CA----------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153152 152 +  4147112 GGATACTGTCTGGACTAGTTATCAA--TGgaacaagaaaatatttttgagacagaccaggaactcaaaaaaaatcaagaaagaaaGCT-CTTGAGT----TAACATGCTATTATATCTGGAACTATA------GAATAAAAGGTTCATGATGT---CATATTGAATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e cb4.chrX              10242597 393 + 21540570 I
e caeRem4.Crem_Contig0   1781079 157 -  4500979 I

a score=-17424.000000
s ce10.chrX              4901076 127 + 17718866 AAGATTTATCCAGGAGTTTGGTAAGAGTTGGACTAAAATTGTGCAAATCTTGGGCTCCGCTTAAATATAGTTTTGCCCAAGTCTTATCACGTTT-----TGCCCAAGTTTTGAAGATAAAGCCAAATGCCGA---------------
s caeRem4.Crem_Contig0   1781236  80 -  4500979 ------------aaaattt--------tctgggaaaaatga---ctaacta------------aACTGAATAC-------------TTGAAAAG-----AATCTaagttttgag---agagaaaaacggaaacCGG-----------
i caeRem4.Crem_Contig0  I 157 I 59
s caeSp111.Scaffold409    111200 100 -   201088 -----TTACATGAAAATCT------Agattaaaaacaaatg---ataTCATGG---------aggtttgattt-------------tttggtttttgagaatctGCGCTTC-----------AAAATGGGAACTCTtacaatatttt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153304  90 +  4147112 TTGATTTCTATGTGATTTG------AGTTTGGGAATAATAG---AAACcat------------aattcgtttt-------------tttcgttc-----aCTTCTGGTTTT-----------CTATTGGtctttcttcca-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e cb4.chrX              10242597 393 + 21540570 I

a score=-3381.000000
s ce10.chrX              4901203 79 + 17718866 GTGGTTACACAAGATCAAATGAAGAAATCAAAAACACAATTTTCAAAAATTGGAGGCGTGAAATATTATCATGTAGGGC
s caeSp111.Scaffold409    111300 25 -   201088 ------------------------------------tgattttca------------gtgacAGATT------CAGATC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153394 26 +  4147112 -------------------------------------gaatctcaAG----------ATGTCTGAAT------CAGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e cb4.chrX              10242597 393 + 21540570 I
e caeRem4.Crem_Contig0   1781316 59 -  4500979 I

a score=-418.000000
s ce10.chrX              4901282 19 + 17718866 TTTCTCATA--TGTCTTTATC---
s caeRem4.Crem_Contig0   1781375 21 -  4500979 TTTATCAcagctgtttttttc---
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold409    111325 13 -   201088 -----------TGTTTTATTCATC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153420 13 +  4147112 -----------TCTCTTGTTTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I
e cb4.chrX              10242597 393 + 21540570 I

a score=9400.000000
s ce10.chrX              4901301 559 + 17718866  
s cb4.chrX              10242990 644 + 21540570  
i cb4.chrX              I 393 C 0
s caeRem4.Crem_Contig0   1781396 623 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    111338 632 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3153433 707 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   317231 1609 +   591668 I

a score=79588.000000
s ce10.chrX              4901860 445 + 17718866  
s cb4.chrX              10243634 447 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1782019 397 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    111970 400 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3154140 397 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   318840 328 +   591668  
i caeJap4.Scaffold17934 I 1609 I 1225

a score=8795.000000
s ce10.chrX              4902305 18 + 17718866 C-CATGCAATCAAATGTTC
s cb4.chrX              10244081 19 + 21540570 CACTTTCAATTggatgttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1782416 18 -  4500979 C-CATTCAATCGgatgttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    112370 18 -   201088 c-ttttcaattcaatgttc
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3154537 18 +  4147112 C-TATTCGATTCGATGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I

a score=-4925.000000
s ce10.chrX              4902323 19 + 17718866 AGATGCTAGAT----------GTGCTAGA
s cb4.chrX              10244100 18 + 21540570 ---ttcttcttcttctacttg--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1782434  8 -  4500979 ---ttcttctt------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3154555  1 +  4147112 ----------T------------------
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112388  3 -   201088 I

a score=14413.000000
s ce10.chrX              4902342 44 + 17718866 TGCTCCCAATTGGAT-TTATTC-ATTTTGTAAA----------AAATCAGAGTTCA
s cb4.chrX              10244118 49 + 21540570 -----cCAATTGAGTCAAATTC-ATTTTGT-AGGACAAGCAAAGAATCAGAGTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1782442 38 -  4500979 -----aaaattgaat-atattc-GTTTCAT-GG----------AAATCACAGTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    112391 43 -   201088 ttctcacaatTGAGC-GAATTC-GTTTTAT-GG----------GAATCAGAGTTCA
i caeSp111.Scaffold409  I 3 I 617
s caePb3.Scfld02_0       3154558 45 +  4147112 TTCAGTCAATTGAGT-GTATTCGGTTTTATAGG----------AAATCagagttca
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I

a score=-69.000000
s ce10.chrX              4902386 1 + 17718866 A
s cb4.chrX              10244167 1 + 21540570 C
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1782480 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 392
s caePb3.Scfld02_0       3154603 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I

a score=-4959.000000
s ce10.chrX              4902387  41 + 17718866 --------------------TTTCAG---------------------------------TAAAGTGAAAT----GGGGCACGTAGGAAAAAG--TTCAGT---------
s cb4.chrX              10244174 109 + 21540570 tttttgatttagaTGTGTAGatttagattacggtagcaaCTAGGTGGGTGTGAGTAGAATTGAATGGAGCCATTGAAGCGGAAAACAAGAAGGTTTGAAAATCTTCTGT
i cb4.chrX              I 6 C 0
s caePb3.Scfld02_0       3154604  57 +  4147112 ------attttaaaacgTGAATTTTG---------------------------------TTAGAGGGCAC----GAAactagaatgaaaaaagattgaat---------
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I
e caeRem4.Crem_Contig0   1782481 392 -  4500979 I

a score=-171.000000
s ce10.chrX              4902428 13 + 17718866 GTATTTTTTT----------TTG
s cb4.chrX              10244283 23 + 21540570 TAGTTTCTTTCATACCAAAATTG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3154661 22 +  4147112 I
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I
e caeRem4.Crem_Contig0   1782481 392 -  4500979 I

a score=-12458.000000
s ce10.chrX              4902441 216 + 17718866 ---ATGTAGTAAAGAAATGCATTTGC-----ATCTG--CGGGACGTGATCAAAATTCAAATGTATTTGCTGAAGCTTGTCCGTTATA-CAAACT--------------TTTCAGCTG--------GAAAGATAAAAGATACCAAGAAAATATGTTTCCATTAATCA----------------TTGAAGTTTGATAAATAATATCGTGATTGATATGCCTAATATCTCAAATAAATTGTTTTTAGTACACTTA-------ATATTGTTTTGAG-----------
s cb4.chrX              10244306 242 + 21540570 GTAAGTTATTAAGAAACAATAGCTGATAAAGAaccaatttgaaaatgatctgaaattga------------------------taaatcaaactacaaaacggttttgttttattggaaaaaaacaatatgCAAAAGGATGCAActtattgtattttttctaatagaacgcGACCCAAATACGAGAAATTTGAC-AATAAT------ATTTAGAAccctaaaaaaagaaaaaaactg-tttcaaaatgcaTGTACTGAGGTAGCGTTCTCGGAA---------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3154683 161 +  4147112 ---ATCTAGTAAAGTAAAATGTGTTTCAACGACCTA----------GATTtcaagacaa------------------------caaa-aaaactagagattGCAGGTGTTTGATCTG--------aatctaaaaaagaaaacaaa----------------------------------------------gac-aCTAAT----------------TTAATCAAAGAAGAA----------GGGATTGATG---TGAGATAGTTTCCTAGTACCAATTCAAG
i caePb3.Scfld02_0      I 22 I 36
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I
e caeRem4.Crem_Contig0   1782481 392 -  4500979 I

a score=-877.000000
s ce10.chrX              4902657 36 + 17718866 TTCGTATAAAT----------------AATTAAT-GTGAATGTCTGATGTG-AA
s cb4.chrX              10244548 54 + 21540570 CTACTGTAGATGGTACTTCCGTCTTAGAATAAATCATGTATTCCCTATGAGCGG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3154844 36 +  4147112 I
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I
e caeRem4.Crem_Contig0   1782481 392 -  4500979 I

a score=-35509.000000
s ce10.chrX              4902693 665 + 17718866  
s cb4.chrX              10244602 695 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3154880 705 +  4147112  
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I
e caeRem4.Crem_Contig0   1782481 392 -  4500979 I

a score=-11354.000000
s ce10.chrX              4903358 128 + 17718866 TTCCA-AATTTTCATACACTCTTATTAACTGAAAAACTTGA-AA-----TACTAACTTGA----------AATTTTTTTTCTGAAATAATCGTCTAAGCCCTTTGATTAAATATGATGTA-----------------------------TTGTGC-TCAAAATAGGGGATTACCA
s cb4.chrX              10245297 148 + 21540570 TTCCG-GTTCTCGATACA------TCAA--AATAATTATTC-AA-----TAATTGTTTTACAACAATCATAATTAGGCTCTTCCAAACATATCTCC--TCTTCAAATTGAATGCACTGTA-------CTATTCAATCCACAATCCAC--TTCACC-TCATCATTACGGATTACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1782873 149 -  4500979 TTCCATAATATGCAAACACTTTTGTCAA--TAAAATACTCCGGA-----TAAGTGCATCATTTTAAATCTATTCATTTTAATATAATGATACATT----------ATTATATTTACTGTA-------CTACCCTCTTCATCGTCAAC--CTCTTCATTAAAAGTACGGATTATCC
i caeRem4.Crem_Contig0  I 392 C 0
s caePb3.Scfld02_0       3155585 157 +  4147112 -ttcgtaaatttcaaaca--------aa--aagctTCCTGC-AAGCCCTTATTTGCTTTGCATAAAATTCCTTTTCTGCTTTGCAATTATCTTCCT--TCCTTATTTTCCGGGTCCTGCAATCCGACCTAATCTCCTCATTATCCCCAATCCACCCTTA----TACAGTTCATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I
e caeSp111.Scaffold409    112434 617 -   201088 I

a score=11737.000000
s ce10.chrX              4903486 113 + 17718866 AAAAGGATCTTGCGTAACCT---TCACACCATTAGCCACTCACTACACCACttctctcttcctttctctctttctttc--tACGTCTGCG--TTTATTTGGGTGTGTA--------------TCTCT--CGT-------GACG
s cb4.chrX              10245445 110 + 21540570 AAGCGGATCTTGCGCAACGT-CCTCACACCATTTG-----CAGTAAATCAC------------CCGTCTTTGTATCTTTATATGTCTGCG--TATCTCTTGGTGTACAC-----------ACTCTCT--CACACTGTCTGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1783022 105 -  4500979 AAACGGATGTTGCGCAATGT-CCTCACACCATTTG-----CATTAAATCAC------------TCGTCTTTGTCCATT--CTTGCCTGCG--TCTTTA-TGGTGTGCA------------GGTCTCT--CGC-CGGTCCGATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    113051 111 -   201088 AAACAGACGTTGCGTAACCT-TCTCACACCACT--------AGTTGATCAC-------------CCTCTTTG--TTCg--tgtgtctgcg--tctctt-tggTGTACTTATCTCTCTTCacctttct--tct-tcaccCTGTG
i caeSp111.Scaffold409  I 617 C 0
s caePb3.Scfld02_0       3155742 114 +  4147112 AAACGAATGTTGCGTAACCTCTGTCACACCA------------TTAATACC-------------CGTCTTTGTCTTCT--TGTCTCTGCGTATCTCAT-TGGTGTACATGTGCTACCTCATCTCTCTACCCT-TTGCCAGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   319168 1225 +   591668 I

a score=123046.000000
s ce10.chrX              4903599 501 + 17718866  
s cb4.chrX              10245555 580 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1783127 554 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    113162 549 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3155856 563 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   320393 556 +   591668  
i caeJap4.Scaffold17934 I 1225 I 717

a score=14372.000000
s ce10.chrX              4904100 55 + 17718866 TCAATCTCGACCCCCAAATCTTGACAATTACTTGGG--CTCCTTCAATTGTAAGTAA
s cb4.chrX              10246135 41 + 21540570 TCAATCTTGG---CAAGAATTTGACAATTACTCTGGCTCTCTTC-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1783681 54 -  4500979 TCAAACCCAA---CCAAATCTTAGCAATTACTTTGGGTGTCTTCCAAGTCTAACTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    113711 54 -   201088 TCAATCTCAT---CCAAATCTTCACAATTACTTTAGGAGTCTTCCAAGTGGAATTGA
i caeSp111.Scaffold409  C 0 I 157
s caePb3.Scfld02_0       3156419 49 +  4147112 TCAATCTTGG---CCGATTCTTGACAATTACTTGGGGTGTCTTCCAA----AGTta-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   320949 717 +   591668 I

a score=-6768.000000
s ce10.chrX              4904155 47 + 17718866 -----------GAGTTGTTTA--------GTTGGGTGTTTTACATT----------TCACAGTAAGATTGTTTGGT
s cb4.chrX              10246176 29 + 21540570 ---------TTGAATAAATTA-----------------------------------AGTTAGTAAGT---GTTAGG
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig0   1783735 60 -  4500979 ------ATTTTCGATAGCTTAAGACTTACCAAAGACGTTTTACTTT----------AGTTAGCAAGTTGAACTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3156468 64 +  4147112 gatttgattttctttggaTAA------------GACATCTTTGTTCTGAATACAAAGGGTGGTAAGAGTACTTGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   320949 717 +   591668 I
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=-2583.000000
s ce10.chrX              4904202 72 + 17718866 ATACAGTTTTTG------CCCTATCAGTCTTTGCACCTTGTTTCTAAAATTTTATATATCTTTTTTTTTGTTATGGTT
s caeRem4.Crem_Contig0   1783795 39 -  4500979 ------------------GTTCAACTATATTTTTA-------TGTAACATTT----------TTCTCGTTGACT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3156532 69 +  4147112 -----GTGCTAGGAAGAGATTCACCAGTTTTCCCA----ATTTCTAACATTTCGAATCTGTGTTTTTGTGCTTTAGTT
i caePb3.Scfld02_0      C 0 I 166
e caeJap4.Scaffold17934   320949 717 +   591668 I
e cb4.chrX              10246205 60 + 21540570 I
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=552.000000
s ce10.chrX              4904274 59 + 17718866 TCACCA------TATTGTTTAGTAGTAATTTTTTTTTAACTTTTCTTTAAAAT----AAACCTAGTTTT
s caeRem4.Crem_Contig0   1783834 64 -  4500979 TGAAAAAGAATGTATCTTTTATTAGTA-----TTTTTAACCTTGTCTATGAGTCTCGAAagctaatttt
i caeRem4.Crem_Contig0  C 0 I 67
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e cb4.chrX              10246205 60 + 21540570 I
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=0.000000
s ce10.chrX              4904333 7 + 17718866 CAAAGAT
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e cb4.chrX              10246205 60 + 21540570 I
e caeSp111.Scaffold409    113765 157 -   201088 I
e caeRem4.Crem_Contig0   1783898 67 -  4500979 I

a score=-244.000000
s ce10.chrX              4904340 229 + 17718866 ATATGTTCACCTTTCAGTTAGTCAGGTTCCACGTTCAGTTTTTGTAATAACTTTTGAATTTAAATTAATTTAGTATTTTCTATGCAAGAAAATTATTACTTTTAGATCTTTTATGTTCATTCATACGCTTATTTGAAA----AACCAAACATGTATTTGGTGTTTTCCTTACCAAATGTTTATAATTTTTGTTCTGGAAGTAGCGTAAAAATACATTAG--AAAAATGTATTCTT
s cb4.chrX              10246265 181 + 21540570 atgtgttGCCCCTCC---TGGTCGAACTTCAAAAACGCttt---taaaaaagttggaatctctg-aaattttgtttttt-------------taattaccgtgaaattttttccaaaaatgcac-CGTGACTgtgaaaattgagccaaaC-----TTTTGCGGTTCCCTC---------------------------GAGAGACGTGAAAATG-ATTAAATAATAGAGCATTCTT
i cb4.chrX              I 60 I 25
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e caeSp111.Scaffold409    113765 157 -   201088 I
e caeRem4.Crem_Contig0   1783898  67 -  4500979 I

a score=0.000000
s ce10.chrX              4904569 29 + 17718866 ATGTAAAAAATTCATAGAAATTCATTTAC
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e cb4.chrX              10246446 25 + 21540570 I
e caeSp111.Scaffold409    113765 157 -   201088 I
e caeRem4.Crem_Contig0   1783898 67 -  4500979 I

a score=-2766.000000
s ce10.chrX              4904598 526 + 17718866  
s cb4.chrX              10246471 478 + 21540570  
i cb4.chrX              I 25 C 0
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e caeSp111.Scaffold409    113765 157 -   201088 I
e caeRem4.Crem_Contig0   1783898  67 -  4500979 I

a score=687.000000
s ce10.chrX              4905124 7 + 17718866 TACAGTT
s cb4.chrX              10246949 5 + 21540570 --taggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1783965 7 -  4500979 TGTAGGT
i caeRem4.Crem_Contig0  I 67 C 0
e caePb3.Scfld02_0       3156601 166 +  4147112 I
e caeJap4.Scaffold17934   320949 717 +   591668 I
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=2478.000000
s ce10.chrX              4905131 32 + 17718866 TATGACTAGTATAATAT-ATCTTTC--------------CTGTATCA
s cb4.chrX              10246954 37 + 21540570 caaaacAAGTTTGATGC-ATTTTTCTCACC---------CATCCTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1783972 40 -  4500979 CACAACAAGTTTTATGC--TTTTTCTCACCTTCT-----CAATACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3156767 47 +  4147112 TATGACAAGTACAACAAAATATTTCCCACCTTCCCTTCACAGTATCG
i caePb3.Scfld02_0      I 166 C 0
e caeJap4.Scaffold17934   320949 717 +   591668 I
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=-3964.000000
s ce10.chrX              4905163 21 + 17718866 TTT--------CACCTCCAATTCCCCCTC
s cb4.chrX              10246991 26 + 21540570 TTCACCTGTATCGctttcacttcttc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784012 18 -  4500979 TTC-TCTGTATCACTTTCG----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3156814 15 +  4147112 TTC-TTTGTATCACTT-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   321666 19 +   591668 --------TTTCACCTCATCCTCCCTC--
i caeJap4.Scaffold17934 I 717 C 0
e caeSp111.Scaffold409    113765 157 -   201088 I

a score=82138.000000
s ce10.chrX              4905184 224 + 17718866 ------TCCCCTCACCCAAATATTTACCATTCGAATCATC--TTTCCAGCTTTTTCACAAAATACACATAAGTATGTAGTATTTCACACCATC--------CTGTTTTCTC----------AA-AT-GATATTGACTAGGCTC----------ATCT-CTTTTGTTCTCATCCCTTCATGTTGTCCTTGATGACAAGGTTCGGATTTCA--TATGTAAAA------------------TGAGGAGGAAAAA---ATGTCCTTCGC--GTGTG----TCCA------------------GT-----AGTAGTAGTT---
s cb4.chrX              10247017 227 + 21540570 ------ttccCGCTC-CAAATATTTACCATTTGAATAATCG-TTTTCAGCTCTTGCAC-AAACAAATTC---TATATAGTATTTCACACAATCAACCTTTcctgttttctt-ttc-tcctccT-AT-GATACAG-CTAAGCTC----------ATTTCTCATTTCTCACTTCGAATTGTGTTGTCCTTGATGACAAGGTTCAAATTTCA--TGTATAGAA------------------T----------CG---GCGTC---TA---GAGTGT---TTCATTCTCCTCG-------------------AGTAGTA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784030 267 -  4500979 ----------CGCACACAAATATTTACCATTCGAATCATC--CTTCCAGCTTTTTCAC-AAATATACACAAGTATATAGTATTTCACACAATCAACCTGTCCTGTTTTCAC-ATCTTTCGTTT-AT-GATACTG-CTAAGCTTCCCCGTCAagctctctttcttttctctcagcAATTTGTTGTCCTTGATGACAAGGTTCGAATTTCA--TGTGTAAAA------------------TGAAAAACCCGCG---GTGTCCTTCA---ATCCGTCCATTCATCCGTCTAGTCAGTATTTGT-----AGTAGTAGTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    113922 248 -   201088 ------TTCCTTCACCCAAATATTTACCATTCGAATCATC--TATCCAGCTTTTCCAC-AAATATACACAAGTATATAGTATTTCACACAATCAACCTGTTCTGTTTTCCTCTTCTATCGTTG-AT-GATACTG-CTAAACTC--CCGTCAagc----tctcttttctctcagcAATTTGTTGTCCTTGATGACAAGGTTCGAATTTCATGTgtgtaaaa------------------tgaaaaacgcgCG---TTGTCCTTCGCGTATCCG----ATCAT------------------------AGTCGTAGTA---
i caeSp111.Scaffold409  I 157 C 0
s caePb3.Scfld02_0       3156829 231 +  4147112 ------TCTCCTCACCCAAATATTTACCATTCGAATCATC--TTTCCAGCTTTTCCAC-AAATATACACAAGTATATAGTATTTCACACAATCAACCTGTCCTGTTTTCCC------TCGTTTCAT-GATACTG-CTAAGC-C--CCGTCaagctct-tcttttctctctcagcAATTTGTTGTCCTTGATGACAAGGTTCGAATTTCA-Atgtgtaaaa------------------tgaaaaatg--------tgtccTTCG---ACGCG----TTCA-----------------------------GTAGTA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   321685 241 +   591668 TGTATCACCTCTCGTGCAAATATTTACCACTCGAATCATCACTTTTCAGCCTTTTCAC-AAATATATATAACTATTCTATAT--------AGCAAC-----CTGTTTTCCG------AAGCGT-ATAGATAATG-CTCACTTC---------------------TTCTC--------------------AGGACGTGGTTCAAATTTCC--AGtgtaaaaaaaacacagagaAGAAATTGAAATACGCGCGCCTGTGCCCGTCT------------TTCATTCAACCAGAATTTGCGAGCGAATAAGTAATAGTATTC
i caeJap4.Scaffold17934 C 0 I 19

a score=916.000000
s ce10.chrX              4905408 14 + 17718866 AGGATA----------C---------CTGACGC
s cb4.chrX              10247244 20 + 21540570 CGGATA----------C--GGTCTTTC-GATGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784297 31 -  4500979 AGGATATTATACGACGC--GCTCTACCTGATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    114170 31 -   201088 AGGATATTATTGAACGC--GCTCTCAGAGATGC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3157060 33 +  4147112 GGGATATTATTGGACGCCGATTTGCCTGGATGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   321926 19 +   591668 I

a score=65335.000000
s ce10.chrX              4905422 183 + 17718866 AATTATCATC--AACGACCTTTTTCCTCTCCCAACCTTTTTTT---------GATCG-----CAAGACGTTCGCAGGTCGTTCGGGTCCTCGTTT---------TT----------CATCTTCTTCTTTTC--ATT----TCATCGAATTTCAATGAGC-GAT--GTGTTCG---------CTGCGATTGTGTCATTTTTTGAGCGCGC--------TCCGATCATGGCATGAGGACAAACAAA
s cb4.chrX              10247264 147 + 21540570 AATTATCATC--AACGAccttt-------cataactttttttt-------gagatcgA---------------CAGGTCGTTC-CATcctcaatt---------------------catttttctctttccaaa--------------------TGAAC-GAC--GTGTTCG---------------TTGTGTCATTTTTT--GCGCGTA----ACGTCCGATCATGGCATGACAACAAACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784328 201 -  4500979 AATTATCATC--AGCGACCTTT----CCACACAACCATTTTT----------GATCGA--CACAAGACGTTCGCAGGTCGTTT-CATCCTCAATTTCTcacctctttttttcaatgcatttctcgatttcttaGTT----TCTCATTTCCTCGTTGAGCGGAC--GTGTTCG--------GATACATTTGTGTCATTTTTT--GCGCGC--------TCCGATCTTGGCATGAGAACAAATAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    114201 183 -   201088 AATTATCATC--AACGACCTTT----GCCGCCAACCTTTTTT----------GATCGA--CACGAAACGTTCGCAGGTCGTTT-Gatcctccatt---------ttttt----------ctccctcttttccaatg----cattcatttctcattgaGGGGACGTGTGTTCG---------TTGAGATTGTGTCATTTTTT--GCGCGC--------ACCGATCATGGCATGAGAACAAACAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3157093 193 +  4147112 AATTATAATC--AGCGACCTTT----TCCGCCAACCTTTTTT----------G---GA--TCAGAGATGTTCGCAGATCGTTT-gatcctcgttt---------ttttttgtttcgcacctttctcttttccaatgaattcattcatttctcaatgA-GGGACGTGTGTTCG---------TTGGGATTGTGTCATTTTTT--GCGCGC--------TCCGATCATGGCAtgagaacaaacaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   321945 203 +   591668 AATTATCCTCTTTTCGACCTTT----TCTCagaatcctttttttttttggttgcttGACACACGAGACGTTCGCAGGTGGTTC--TCCCTCTCTT---------GTCTCT------CTTCCTCGTCACTCCGAAAC-------ACAAATCTC--------AAC--GTGTTCGTTTATTGCAATGCAATTGTGTCATTTTTT--GCGTGCGCTCTCTCGCCGATCATGGTGTGAGAA-GAACAAA
i caeJap4.Scaffold17934 I 19 I 269

a score=18716.000000
s ce10.chrX              4905605 170 + 17718866 ACACCGAGGGATTGAGACAGAGGCCAAGAGCTATTGAATTTGC-----GCCTATTACATTACAATTTGAGA----------CGTTCTTTGTTCGGTGGTTTTTTTGTGT-TGTGTTC---------------------CCGAGAACG-TTCGTTTACTTTATCGGACTTGAG--AACAGATAGAC------GTGT-GATCTAGTTG-AAAAGAGGA------CC
s cb4.chrX              10247411 159 + 21540570 AGC----------------AGGAGAAAGAGGCTCGGATTTTTCTCGCACCCGATTACATTACAAATCGCAGGGCGCCCCTCCGTCCAttgttcgtt--tttttgttggt-gATGAAT-----------GGG---AAATCCAAGGAC--AACCTTTACTACCTCGG---------AACAGGTAGAA------CAGG-GATAGGGAAA--------AA------TC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784529 149 -  4500979 A--------------------GACCGAGAGCCTCGAAAATTTC-----ACCGATTACATTACAATTTGAGA----------CGTTCATTGTGCGTT---------------GTGAAT-----------GTG-----ATCCAAGGAC--AACCTTTACCTTTTCGGACTTGAGAAAACAGGTAGAAGAATTTCGGA-GGTTagaaaagaagtgagaa------aT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    114384 184 -   201088 ACA---------------GGGGGCTGAGAGCCTCGAATTTCGT-----GTCGATTACATTACAATTCGAGG----------CGTTCATTGTTCTGC-GTTTTTGTGTGCGTGTGAAGTGAGAGGAAAGGAGGACACATCCAAGGATACAACGTTTATTTTCTCAGACACGAG--AACAGGTACAA------GTGTCGACTAGAAta-gaatgagaatgagagTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3157286 160 +  4147112 aca----------------ggGGCTGAGAGCCTCAAATTTCGC-----GTCGATTACATTACAATTCGGGG----------CGTtcattgttcgtt-ttttttgtgtac-tGCGAATT----------GAGGACAAATCCGAGGACA-ACCTTTTACTCTCTCGGA----GG--AACAGGTACAA------ATGG-GGCTAGGATG-GAATGAGAA------AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   322148 269 +   591668 I

a score=37132.000000
s ce10.chrX              4905775 114 + 17718866 TTAGGTTGCGTCACCCACACACAAATACAGAC--ACATCCTGA--AT---ATCATTCATGCAAATGTAT------CATTTTTGTGTTCAGATAGTTCAGACACATGTGTATATAGATAATAGCAACT
s cb4.chrX              10247570 113 + 21540570 CCAAGTTGCGTCA--CACATACAAACACATACATACATCCTGAATAT---ATCATTCATTC--ATATAT------CTTCAATTCATTCTT-TCCTACACACGTATGTACATATCGATAATAGCAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1784678 101 -  4500979 TCAGGTTGCGT----CACATACAAACACAGAC--ACATCCTGG--AT---ATCATTCATGCAAATGTAT------CTTCTCTGCGTT---------CAGATGTGTGTGTATATAGATAATAGCAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    114568  79 -   201088 TCAGGTTGCGT----CACATATAAAC--------ACATCCTGA--AT---ATCATTCAT----------------CTTCAATGTGTT---------CAAACGT------ATATAGATAATAGCGACT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3157446  98 +  4147112 TCAGGTTGCGT----CACATACAAAC--------ACATCCTAA--ATATCATCATTCATACGAATGTAT--CTTCCTTCAACGTTTTGC-------CATGTGT------ATATAGATAATAGCAACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   322417 104 +   591668 TTGGATTGCGT----AACACTCATAC--------ATTCAACAA--AT---ATCATTAATGCATATGTATGCATGTCTTCATGTGGATGGA------TAGATAGATATGTAGACAGATAGTAGAAATT
i caeJap4.Scaffold17934 I 269 I 348

a score=74781.000000
s ce10.chrX              4905889 282 + 17718866 TCCGATTGCATACCTTTTCTATCAATGTATGTATAT-GCATTTATGTATGACTTCAAAACGGTGAGAAAATGAGATGCA--TGTCA----TTTCACGTTATCACCTCCTCTCTTTTTTT-GCATGTGCC-TCTGACAATGAAGCGATTGATTTTTT-----------------------GCCCTGTTTTCAAAAGTTT----TATTATCAGTGGTCTCCCTGTCCTCATTTCG-A----TGATG----AATCCACACCACCTTT--GAATTAGAATATATA-TCGAGAATGTCCAGCTGTGAA-----ATGAAGGTCATTTGAATCATGTAAACA
s cb4.chrX              10247683 283 + 21540570 TCCGATTGCATACC------ATAAATTTCTGTCTCCTCTCCACATTTATGATTTCTAG-----AGGAAAATGAGATGCAATTATCACACGTTGCTTG----CGTATCTTATCACTA----TCAGGTG-----TGCCGATGaaacaattgatttttt-ttctgacttcattttttcactttcattgt---------ttt----tATTATCAGTGG---------GAGAAGTGTG-A----TCGTGACGtaatcaatttgaattttgggaatttgaatatttggcGGGAGACGTCCAGCTGTGAAGGAATCGCAAGGTCGTCTAGTTTCTGTCAACA
i cb4.chrX              C 0 I 243
s caeRem4.Crem_Contig0   1784779 278 -  4500979 TCCGATTGCATACC------ATAAATGTCTTTCTTC-ATATGCATATATGATTTCaaa-cagtgagaaaatgagatgcA--TATCACGTATTGCGTG----------TTATCAC------TCATGTGCC-TTTTCTGGTGAAgcaattgattttttattctcaC---------TCACTctcactgttttcaaa--ttt----tattatcaGCGGTCTGGTCTTTAGGTGTGTGTT----TCGTGACGtaatcaatttcaatttc-ggaATTTGAATA-----CCGAGAATGTCCAGCTGTGAA-----TGCAAGGTTGGTCAATCCTTGTCAACA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409    114647 276 -   201088 TCCGATTGCATACC------ATGCA------TTTTT-GCCCGTCTATATGATTTCAAA-CagtgagaaaatgagatgcA--TATTACGTATTGCGTGTTATCACTTATTATCAT------TTATGTGCCCTCTCCTGATGAagcaattgatttttt-------------tgtgtcACTCTCActgttttccaa--ttt----tattATCAGTGG-----TCTCGACGGGTTTG-AATGTTGATGAcgtaaa--atttgaaatttcggaattagaata-----aagaaaatgtcCAGCTGTGAA-----GGCAAGGTCATCCAGTTCTTGTAAACa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3157544 287 +  4147112 TCCGA-TACATACC------AGGAATATC--TTTTC-ATATGCATATATGATTGGAGA-CAGTGCGAAAATGAGATGCA--TATCACGTATTGCGTGCTATCACTTTTTATCACCACCAACAGTGTGCCTCTGGCCGATGAAGCAATTGATTTT-----------------TGTCACTctcactgttttcaaa--atttctatattATCAGTGATAGTCTTTAGGCATGTTTG-A----TCATGACgtaaac-atttcaattttcggaattagAATA-----TCGAGAATCTCCAGCTGTGAA-----GGCAAGGTCGTCCAGTTCTTGTAAACA
i caePb3.Scfld02_0      C 0 I 201
e caeJap4.Scaffold17934   322521 348 +   591668 I

a score=0.000000
s ce10.chrX              4906171 2 + 17718866 TT
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I
e caeSp111.Scaffold409    114923 0 -   201088 C
e caeRem4.Crem_Contig0   1785057 2 -  4500979 I

a score=911.000000
s ce10.chrX              4906173 18 + 17718866 -GGTCAGAGGTTGATTCAA
s caeRem4.Crem_Contig0   1785059 18 -  4500979 -GGAAATtgtttgattcaa
i caeRem4.Crem_Contig0  I 2 I 133
s caeSp111.Scaffold409    114923 17 -   201088 cggaaaatgatt--ttaaa
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I

a score=457.000000
s ce10.chrX              4906191 49 + 17718866 T--------------TCAGGTAGTGTGAAGTTTGTGGAGTTTCGAAATTTTAGTTC---ACAAATT
s caeSp111.Scaffold409    114940 66 -   201088 tcCTCATTGTGGCTGTCAGTTTATGTTTGGTTTCTAAATATACAAAACTTTTATTCAGAACAAATT
i caeSp111.Scaffold409  C 0 I 62
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I
e caeRem4.Crem_Contig0   1785077 133 -  4500979 I

a score=0.000000
s ce10.chrX              4906240 773 + 17718866  
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I
e caeSp111.Scaffold409    115006  62 -   201088 I
e caeRem4.Crem_Contig0   1785077 133 -  4500979 I

a score=304.000000
s ce10.chrX              4907013 24 + 17718866 CAAAAACC--AAGTTAGGAAAAAAAA
s caeRem4.Crem_Contig0   1785210 26 -  4500979 caaaaatctcaaatttacataaaatt
i caeRem4.Crem_Contig0  I 133 C 0
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I
e caeSp111.Scaffold409    115006 62 -   201088 I

a score=-459.000000
s ce10.chrX              4907037 30 + 17718866 AAGATTTTTGAAATTCGCGTGGAGGTCTTT------------
s caeRem4.Crem_Contig0   1785236 36 -  4500979 ------cACATATTTCAAACGCGCATGTTTGTACGTGGGGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115068 30 -   201088 aaGATTCGCATATTTCATATGCATGCCTTC------------
i caeSp111.Scaffold409  I 62 C 0
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I
e cb4.chrX              10247966 243 + 21540570 I

a score=-1626.000000
s ce10.chrX              4907067 4 + 17718866 TTGC-
s cb4.chrX              10248209 4 + 21540570 TTGC-
i cb4.chrX              I 243 C 0
s caeRem4.Crem_Contig0   1785272 1 -  4500979 ---G-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115098 4 -   201088 -TGGG
i caeSp111.Scaffold409  C 0 I 4
e caePb3.Scfld02_0       3157831 201 +  4147112 I
e caeJap4.Scaffold17934   322521 348 +   591668 I

a score=8385.000000
s ce10.chrX              4907071 16 + 17718866 CTGTTTTCTTTGTCTT
s cb4.chrX              10248213 16 + 21540570 CCGTTTTATTTTCGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1785273 16 -  4500979 CCGTTTTATTTTCGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115106 16 -   201088 CCGTTTCGTTTTCGCA
i caeSp111.Scaffold409  I 4 C 0
s caePb3.Scfld02_0       3158032 16 +  4147112 CCGTTTCGTTTTCGCA
i caePb3.Scfld02_0      I 201 C 0
e caeJap4.Scaffold17934   322521 348 +   591668 I

a score=182627.000000
s ce10.chrX              4907087 338 + 17718866 TC-AAAACGATTAAAA-TGCTTCATCATCTTTAATCTTCTCCCACAATCGCACCTTC-TCTAGCCCGATCT-ATT--TTGACTTATTCTCATCTTTCTCTTTTTT----CGTCT-------------CTCCCCTTTCCCTTTTTAAACGCATGTGTGAAAATACATATGAATAGTCAAAATTCCCTT------TCTTGCAG-----------AAATGGAGCTCAAAATCAATATTGATGGATTAGAGCGGAGTGTGTCTGGTGTGACGGACACTACGACATGCTCTCAGATAATCTATGCGCTGGCACATGCGACGAGTCAAAGGGGTCGATTTGTAATGGTGGAAAAATATCGAAACGTGGTGAGTC-TTTTCTTTTC------
s cb4.chrX              10248229 312 + 21540570 AT-ATAACGATTAAAAATGCTTCATCATCTTTAATCTTCTCCCACAATCGCACCT---CCCGGCCCGATct-ttccttttccgttttcgctttttcttcctccgtctcccatttttgtcgtttt---tgcataatcctcatttt---------------------------------GACct-----------tattccag---------aaaaatggagCTTAAAATCAATATCGATGGACTTGAACGAAGCGTATCTGGTGTGACGGAAAATACGACGTGCTCACAGATTATATATGCCCTCGCACATGCTACAAGTCAACGAGGACGATTTGTAATGGTGGAAAAATATAGGAATGTGGTAAGTCGCTTT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1785289 304 -  4500979 TTCAAAACGATTAAAA--GCTTCATCATCTTTAATCTTTTCCCACAATCGCActttc-tccggaccgattc-ttc--tttccgttttcgttttctttcactttttatgctcttt------cttt---tGCATAGT-TTCATGTT---------------------------------CACCTC-AAA------TGTTTCAG-----------GAatggaactgaaaataaacatcgACGGACTGGAACGAAGTGTTTCTGGTGTGACAGAAAACACAACTTGCTCCCAAATAATATATGCCCTCGCTCATGCAACAAGCCAACGAGGTCGATTTGTAATGgtggaaaaatatagaaatgtGGTAAGT--CTTC------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115122 291 -   201088 AC-AAAa-----------gcttcatcatttttaatctTTTCCCACAATCGCACCTTCTTTTGGGCCGAtctattt--ttgcctatttcgcatcttttcacttctt----tattt-------------ctcactattcctttttt---------------------------------aacttctttt------tcttccag-----------aaatgGAGCTCAAAATCAATATCGACGGACTCGAACGGAGCGTCTCTGGTGTAACCGAAAACACGACTTGTTCACAAATAATATATGCACTAGCGCACGCGACAAGTCAAAGAGGTCGATTTGTAATGGtggaaaaatatagaaatgTGGTAGGtc-tttc------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3158048 308 +  4147112 AC-AAAACGATTAAAA-tgcttcatcatttttaatcttttccCACAATCGCACCTTC-TTTGGGCCGATAt-ttt--tcgctttcttcttttctt----cctttt----tattttcacccttctaaccccacacttcaattttt---------------------------------aagctctatt------ttttGCAG-----------TTATggagctcaaaatcaatatcgACGGACTTGAGCGAAGCGTCTCTGGTGTGACTGAAAACACGACTTGCTCACAAATCATATATGCGTTGGCGCATGCAACAAGTCAAAGAGGACGATTTGTGATGGtggaaaaatatagaaatgtGGTAAGTC-TTTT------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   322869 318 +   591668 tt-gaaattatttaaa-agctTCATCATTTCTTATCATCCCCCATAATCGCACCTTC-TCTGacctatctc-tct--ctctctcacacacacattttctcctttt--------t-------------tctatGCTTTTCATATT---------------------------------ATCCTCTCATCCATAATTTTGCAGCCAACTGACACAAATGGAGCTCAAAATCAACATTGACGGGCTGGAACGAAGTGTTTCCGGAGTGACGGAAAATACGACGTGCTCTCAAATCATCTATGCACTTGCTCACGCTACAAGTCAAAGAGGGCGATTTGTTATGATTGAGAAATACCGCAATGTTGTGAGCT-TTTG------TTTTTC
i caeJap4.Scaffold17934 I 348 I 1832

a score=-90957.000000
s ce10.chrX              4907425 783 + 17718866  
s cb4.chrX              10248541 705 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1785593 459 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115413 403 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3158356 559 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   323187 1832 +   591668 I

a score=208141.000000
s ce10.chrX              4908208 287 + 17718866 AAATTAACT-CAC-TTCAGGAACGCCGATTGGCACCGACTGATCGACCTCTGGAAACGCTGCGCAAATGGAGGGAACACGCCGCAAACGTCACATTTCAAATGCTTCGTGTCGATCAAAACGACGAAATTTGTGGTGAG---------TC----CGTTTTA-------------------AAATTGATTTTA---------------TGT----GCTTCATACCAGATG------AGAATTTAGATCTAGTGGATGAGTCGGTGCCGCTTGAGCCTGCCAAACCCTACTTTCATC---CGAAACAGACATCGACGAGTAGTATGGTCACTTCGTTACCAG----GTA--TGTCTT
s cb4.chrX              10249246 321 + 21540570 AAATTGCCTCTAA-TTCAGGAACGCCGATTAGCACCAACTGATCGACCTCTGGAGACACTCCAAAAATGGAGGGAACACGCCGCAAACGTCACATTCCAAATGCTTCGAGTCGATCAAAACGACGCGATTTGTGGTGAGTTTTCACAATT----AGTTTTG----ATGAgttcc------acatt--tttt-----tttcaatt---ttttgaagcttcaaaGCACATGTGGTTCTAATTTCAGATCTTGTTGACGAGGCACTTCCTCCGGAGCCAAGTAAGCCGTATCTACACC---CAAAACAAATGTCAACTAGCAGCATGATTGCTTCATTACCAG----GTT--TGTGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1786052 314 -  4500979 AAATTAACT-TAA-TTCAGGAACGCCGATTGGCACCGAATGATCGACCTCTTGAAACATTACGAAAATGGAGGGAACACGCCGCAAACGTCACATTTCAAATGCTTCGTGTCGATCAAAACGATGCAATTTGTGGTGAG---------TC----AGGTTTG-TCTCTCAGCTCA------GCATT--TTTTAACGATTTCGCTC---TGT----GCTTCAAACCAGATG-ACTTC----TTCAGATCTAGTAGGCGAGACGTTGCCTCCCGAGCCATCCAAGCCGTATGTCCCAC---CGAAACAGACGTCAACAAGTAGTATGATCACTTCGTTACCAGGTATGTA--TGTATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    115816 308 -   201088 AAATTAACT-CAA-TTCAGGAGCGCCGATTGGCACCGACTGATCGACCTCTGGAAACATTACGAAAATGGAGAGAACACGCCGCAAACGTCACATTCCAAATGCTTCGTGTCGATCAGAACGACACAATTTGTGGTGAG---------TT----AGTTTAGAGTTATTTTCTCG------GATCT--TTTTAACGATTCTCGGG---TGT----GCTTCAAACCAGATG--------AGTTCAGATCTCGTTGACGAGACACTGCCCCCGGAGCCTGCGAAGCCGTATTTTCATC---CGAAACAGACATCAGCAAGTAGTATGATCACTGCATTACCAG----GTA--TGTATA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3158915 295 +  4147112 AAATTAACT-CAA-TTCAGGAACGCCGATTGGCACCGACTGATCGACCTCTGGAAACCTTGCGCAAATGGAGAGAACACGCCGCAAACGTCACATTTCAAATGCTTCGAGTCGATCAGGACGACTCAATTTGTGGTGag---------tt----atttcaa--------------------------ttttaacgATTTTCTTGGCTTTT----GCTTCAAACCAGATG--------TTTTCAGATCCCGCTTCGACTCCGCTTCCTCCTGAGCCATCTATGCCATTCTTCCTCC---TCAAACACACTTCAACAAGCAGTATGAACAATTTACTACCAG----GTACGTGTATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   325019 320 +   591668 AAATTAGCG-CAATTTTAGGAACGCCGATTGGCACCGAATGATCGACCTCTGGAAACGCTGCGCAAATGGAGAGAACACTCTGCAAACGTCACATTTCAAATGCTTCGTGTCGATCAGAACGACGAGATTTGTCGTGAG---------Ttacgcagtttttttttatttttacaaccgttgtttt--ttttcttgtccgTTCTG---CCT----ACTTCAAACCAGATG-ATTT---TGTTCAGAGCAAGTGGAAGAG------CCACTCGAGCCACCGAAACCATCATTTCATTCTGCAAAGCAGTCATCAGCAAGTAGTATGACCACATCGCTACCAG----GTA--TGTCTT
i caeJap4.Scaffold17934 I 1832 I 50

a score=1731.000000
s ce10.chrX              4908495 16 + 17718866 TAGAATTTTTTTTCAT----
s cb4.chrX              10249567 15 + 21540570 Tag--tcttttggtttt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1786366 16 -  4500979 TAG--TCTTTTGTCTTAC--
i caeRem4.Crem_Contig0  C 0 I 59
s caeSp111.Scaffold409    116124 17 -   201088 TAG--TCTTTTGTCTTT-AT
i caeSp111.Scaffold409  C 0 I 44
s caePb3.Scfld02_0       3159210 17 +  4147112 TAG--TCTTTTGTCTTC-AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325339 50 +   591668 I

a score=-23.000000
s ce10.chrX              4908511 2 + 17718866 AC
s caePb3.Scfld02_0       3159227 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325339 50 +   591668 I
e cb4.chrX              10249582 0 + 21540570 C
e caeSp111.Scaffold409    116141 44 -   201088 I
e caeRem4.Crem_Contig0   1786382 59 -  4500979 I

a score=-949.000000
s ce10.chrX              4908513 13 + 17718866 AAACTTAATCTTT-
s cb4.chrX              10249582  5 + 21540570 ---------ttttt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3159229 14 +  4147112 GAGGGTTATTTATT
i caePb3.Scfld02_0      C 0 I 78
e caeJap4.Scaffold17934   325339 50 +   591668 I
e caeSp111.Scaffold409    116141 44 -   201088 I
e caeRem4.Crem_Contig0   1786382 59 -  4500979 I

a score=-4108.000000
s ce10.chrX              4908526 11 + 17718866 -GTT-TTTTTT-----CC
s cb4.chrX              10249587 14 + 21540570 -gtt-ccggTTTTTCC--
i cb4.chrX              C 0 I 41
s caeSp111.Scaffold409    116185 11 -   201088 GGCATCTGATG-------
i caeSp111.Scaffold409  I 44 C 0
s caePb3.Scfld02_0       3159321 10 +  4147112 GGCA-CTAATA-------
i caePb3.Scfld02_0      I 78 C 0
e caeJap4.Scaffold17934   325339 50 +   591668 I
e caeRem4.Crem_Contig0   1786382 59 -  4500979 I

a score=1820.000000
s ce10.chrX              4908537 2 + 17718866 AA
s cb4.chrX              10249642 2 + 21540570 AA
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig0   1786441 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 59 C 0
s caeSp111.Scaffold409    116196 2 -   201088 AA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3159331 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325339 50 +   591668 I

a score=76030.000000
s ce10.chrX              4908539 150 + 17718866 TGTATTGTGTAAA--------TTGAAATTCATTCGGTCAG--ATTCACAATGAAGGCCAAAAC--CAAAAA-----AA--GAGACCATAACCAACTTATCAAATAAATTGGCT-------TGTATCGGTGTCGTATCGGTACGACCTTTACTCTATTATTTGTTGTGGCCATTTTT
s cb4.chrX              10249644 135 + 21540570 TCTTTTGTGTAATTATGGGGGGAGGCATTCAGCCAAGTAGCCATTCACACt------aaaaaataccgaaa-----aa--aaaaccataatccatttttc-att--------t-------tgtatc------------ATACGACCTTTACACAATTATTTGTTGTGGCCATCTTC
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   1786443 142 -  4500979 TGTATTGTGTAAT--------AAGGAATTCAGTCAAATAGCCATTCATAATGA---CAAAAAAGACAGAGACCAC-AA--AAAACCataaccaatttttt-attcgacTCGCT-------TGTATC------------GCACGATCTTTACACTATTATTTGTTGTGGCCATCTAC
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold409    116198 143 -   201088 TGTTGTGTGTAAT--------AGAGAAATCGGCCAATTGGccattcaaaatcaa-at-aataCGACGAAGACCGC-AA--AAAACCATAACCAATATTTC-ATTCGACTAGCT-------TGTATC------------GTACGACCTTTACACTATTATTTGTTGTGGCCATCTTC
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3159333 152 +  4147112 TGTATAGTGTAAT--------AAGGTATTCGGCCAAATAGCCATTCATGATGAA-TCAAAAACGACGGAGACCACaaa--aaaaCCataaccaatttttc-attcgacTAGCTTGAATTGTGTATC------------GCACGACCTTTACACTATTATTTGTTGTGGCCATCTAC
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   325389 137 +   591668 TGGCTTGTGTAAC--------ATGCTATTCGGTCAAATAGCCATTCATAATGTA----------ACGGGAA-----AACGAAAACCATACTCAATTTTGA-ATCGGAATTGTT-------TGTCTC--------CTCTATACGACCTTTACACTATTATTTGTTGTGGCCACCTCG
i caeJap4.Scaffold17934 I 50 C 0

a score=662.000000
s ce10.chrX              4908689 8 + 17718866 TTTTGATT
s caeRem4.Crem_Contig0   1786597 8 -  4500979 GTCTCATT
i caeRem4.Crem_Contig0  I 12 I 3
s caeSp111.Scaffold409    116346 7 -   201088 -TCTCGTT
i caeSp111.Scaffold409  I 5 I 3
s caePb3.Scfld02_0       3159493 7 +  4147112 -TCTCGTT
i caePb3.Scfld02_0      I 8 I 3
s caeJap4.Scaffold17934   325526 6 +   591668 TTCACA--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10249779 20 + 21540570 I

a score=178400.000000
s ce10.chrX              4908697 234 + 17718866 TGCCATCTCTGCCTCTCTTCGGCTTTTGCCCC--------------------------------------------------ATCT-TCTCAACC----CTTCACCT------T------CCCTCCC-ACTGCAACATATTTTACACAACAAAAGCCAATTAAGGAAGAAGTGCGGCGGGC---CAG---CAGCAGCTTGAAAATGGACAAAGAAGCACTAGTTCGTTGCCAACTTACGCCTCGGCAGG---TGGTGTCACTGGCACTCTCGGAC------GCAACACCCGTCGGCCTCCGCCACCAGGTAAGGTTT
s cb4.chrX              10249799 274 + 21540570 CGTCGTCTCTGATTCTCTTTAGCTT----------CTCCCACAATCTCACCTTTTGCCTTTTGCT-----------------TTCTCTCCCAGTcacatacacacaaacacatt------cacacacaactgcaacatattttacacaacaaAAGCCAATTAAGGAAAAAGTGCGGCGGGC---CAGCAGCAACAGCTTGAAAATGGACAAAGAAGCACTAGTTCGTTGCCAACTTACACGTCAAC------TGGTGTCACTGGTACTCTTGGACGAAGCAGCAACAACCGACGACCTCCGCCACCaggta-aacat
i cb4.chrX              I 20 I 2
s caeRem4.Crem_Contig0   1786608 267 -  4500979 CatcttctctgtttctcttcaGCTTTTCCTCC---TTCCCACAACTTCACCTTTTGCCTCTTACC-----------------ACCTCTTTCTCTCGAATTCACATAG------T------AACACCCAACTGCAACATATTTTACACAACAAAAGCCAATTAAGGAAGAAGTGCGGCGGGC---CAG------CAGCTTGAAAATGGACAAAGAAGCACTAGTTCGTTGCCAACTTACGCTTCGGCAGG---TGGTGTCACTGGCACTCTCGGAC------GCAACACCAGACGGCCTCCGCCACCAGGTATGATAT
i caeRem4.Crem_Contig0  I 3 I 2
s caeSp111.Scaffold409    116356 277 -   201088 CGtcttctctgtttctctttaGCTTTTCCATTCAACAACCACAATTGAACCGTT----TCCTTCGCCCCCCTAATTTCTCG-ATCTCTCCC-----------CACAT------T------CACACACAACTGCAACATATTTTACACAACAAAAGCCAATTAAGGAAGAAGTGCGGCGGGC---CAACAGCAGCAGCTTGAAAATGGACAAAGAAGCACTAGTTCGTTGCCAACTTACCCTTCGACAGG---TGGTGTCACTGGCACTCTCGGAC------GAAACACCCGCCGGCCTCCGCCACCAGGTGAGATTT
i caeSp111.Scaffold409  I 3 I 50
s caePb3.Scfld02_0       3159503 299 +  4147112 CGTCTTCTCTGATTCTCTTCAGCTTTTCCCTC--ATCACAATAATTCAACCGTTtgccttctcctcctctttaaTTTCTCGAATCTCTCTCATTC----CCACACAT------TGACATACACACACAACTGCAACATATTTTACACAACAAAAGCCAATTAAGGAAGAATTGCGGCGGGCATACAGCATCAGCAGCTTGAAAATGGACAAAGAAGCACTTCTTCGTTGCCAACTTACCCTTCGACAGGTGTTGGTGTCACTGGCACTCTTGGAC------GCAACATCCGACGGCCTCCACCGCCAGGTAAGATAT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   325532 188 +   591668 -GTCTTTTCTGATTCGTTTGA--------------------------------------------------------------------------------------------T------TCTATAAAACTGCAACATATTTTACACAACAAAAGTCAATTAAGGAAGAAGTGCGTCGGGC---CAG------CAGCTTGAAAATGGACAAAGAAGTACTAGTTCATTGCCAACTTTTGCTTTGGCAGG------------TGCCACTCTTGGAC------GCAA---TCGCCGCCCTCCGCCACCAGGTGagatat
i caeJap4.Scaffold17934 C 0 C 0

a score=-1026.000000
s ce10.chrX              4908931 2 + 17718866 AT-
s cb4.chrX              10250075 2 + 21540570 tt-
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1786877 2 -  4500979 AT-
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3159802 2 +  4147112 AT-
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17934   325720 2 +   591668 -ta
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    116633 50 -   201088 I

a score=-1351.000000
s ce10.chrX              4908933 17 + 17718866 TCC---ATATCaattttttt
s cb4.chrX              10250077 12 + 21540570 caa--------atttttttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1786879 20 -  4500979 TGATATATGTCATTTCCTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   325722 17 +   591668 ---ttattattgtttctttt
i caeJap4.Scaffold17934 C 0 I 1030
e caePb3.Scfld02_0       3159804 27 +  4147112 I
e caeSp111.Scaffold409    116633 50 -   201088 I

a score=273.000000
s ce10.chrX              4908950 1 + 17718866 a
s cb4.chrX              10250089 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1786899 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 32
e caePb3.Scfld02_0       3159804 27 +  4147112 I
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e caeSp111.Scaffold409    116633 50 -   201088 I

a score=1262.000000
s ce10.chrX              4908951 153 + 17718866 aaaataaatttGTCGAGAATTTTTATATTAAAGCGAAGTATATATTATATTAAAGCGAAGTATATA--GATACAATATCAAATTATCATATTTAGTTAAAGTTATCAAAAAAAAACATTTTTGAAATTTTTTTATTT-----------ACAGTCAAAAAAAGTCGA
s cb4.chrX              10250090 158 + 21540570 acaacaaTTTTGGCGAAA------ATATTAACTAGTATTTTA-ATAATGTTATATCGTGGTAGAGAAcgctttcttttcaaatt-tcaattattttcaaagCATATAAATACAGTTAACTTCGAAAATACTTTATTTTCATAGTAGTAATATTTAGAAAAGGTCGa
i cb4.chrX              C 0 I 713
e caePb3.Scfld02_0       3159804  27 +  4147112 I
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e caeSp111.Scaffold409    116633  50 -   201088 I
e caeRem4.Crem_Contig0   1786900  32 -  4500979 I

a score=0.000000
s ce10.chrX              4909104 256 + 17718866 AGTTTTCACATATGATAATTATGTTAATCGAACCAATAATCTTTTTTCTTTAGTGACAATTTTTATTGTTTAATGACGTCGATATATCTTGTAGTTGAACACTCTAGGGGTTTGAAGCAGCAGCAATACTTGAAATTATCTAAAATTTCTACATTTTTGAACAACGTGCTTACCAAAAGGTTGACAGGCAATTTGAGCAAGAACTAAAACAAAATTGGATAATTATCGTTATTATAATAATTAGTACTGTTGGAAT
e caePb3.Scfld02_0       3159804  27 +  4147112 I
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10250248 713 + 21540570 I
e caeSp111.Scaffold409    116633  50 -   201088 I
e caeRem4.Crem_Contig0   1786900  32 -  4500979 I

a score=153.000000
s ce10.chrX              4909360 19 + 17718866 TTTGACTAAATTTTTCAAA
s caeSp111.Scaffold409    116683 14 -   201088 TTTATCCAAGTTT-----A
i caeSp111.Scaffold409  I 50 C 0
e caePb3.Scfld02_0       3159804 27 +  4147112 I
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10250248 713 + 21540570 I
e caeRem4.Crem_Contig0   1786900 32 -  4500979 I

a score=4530.000000
s ce10.chrX              4909379 8 + 17718866 AAATCGGA
s caeRem4.Crem_Contig0   1786932 8 -  4500979 AAATCGGA
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold409    116697 8 -   201088 AAATCGGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3159831 8 +  4147112 aaatcgGA
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10250248 713 + 21540570 I

a score=64761.000000
s ce10.chrX              4909387 144 + 17718866 ----TTATTTTCTTC--TCGTGATCAGTTGTAT-AAAATGAAC----CGAATCGTCGCAATTGTATACCGGCCAACAC--TTTTTTTCTGACTTTTTTTCTCAAAGGAAGTGATCCAAATGTCGGCCAGCAGAAGGAAGTGACCGCACATATCACTT
s cb4.chrX              10250961 156 + 21540570 tttttttctgcctaTGATTGTCGCCGGTCTTGTAAAACTGAACCATACACAAACATGCAATTTTATACCGGTCgacacttctttttttctgacctTATTGTT-GAGGAAGTGAAGAAAATGTCGGCCAACTAAAGGAAGTGGATACTCATATCAGTT
i cb4.chrX              I 713 I 363
s caeRem4.Crem_Contig0   1786940 140 -  4500979 ----TTACTCCtttttttCATCGCCGGTCTTGT-AAACTGAACTAAACG-----ACGCAATTTTATACCGGTCGACAC-----tttttttGCCTGTATTATC-GAGGAAGTGAAG-AAATGTCGGCCAACCAAAGGAAGTGACCGCACTTGTCGCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    116705 139 -   201088 ----ttactttcttt-----tctccggTCATGT-AAACTGAATCAGTCAAATCG-----ATTTAATACCGGTCGAcac--ctctttttttgtctgtATTATC-GAGgaagtgaagaaaatgtCGGCCAACCAAAGGAAGTGGCCGCACATATCGCTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3159839 145 +  4147112 ----TTACTTTCCTT----GTCGCCGGTCATGT-AAAGTGAACTAACCAAATCGACGCAATTTTATACCGGtcgacac--tttttttttggtctgtaTTATC-GaggaagtgaagaaaatgTCGGCCAACTGAAGGAAGTGGCCGCACATATCGCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I

a score=6168.000000
s ce10.chrX              4909531 35 + 17718866 AGAATTGTGTTATTTTACCATTGAAACGTTTTGTC
s caeRem4.Crem_Contig0   1787080 28 -  4500979 -------GGGTTTCTTACCattgatacattttttt
i caeRem4.Crem_Contig0  C 0 I 188
s caeSp111.Scaffold409    116844 29 -   201088 ------CGGTTTTCTAACCAttgatactttttttc
i caeSp111.Scaffold409  C 0 I 239
s caePb3.Scfld02_0       3159984 28 +  4147112 ------CGGTTTTCTAACCATTGATACATTTAGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I

a score=0.000000
s ce10.chrX              4909566 8 + 17718866 ACACTAGA
e caePb3.Scfld02_0       3160012 0 +  4147112 C
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I
e caeSp111.Scaffold409    116873 239 -   201088 I
e caeRem4.Crem_Contig0   1787108 188 -  4500979 I

a score=-1109.000000
s ce10.chrX              4909574 353 + 17718866 TATTCATGTTTCAAATTGATTTTTTCACTCGTTGAGCTCAAAATTAAAGCTGGGTAGAATTTTTTTCAGCATTtcttcaaagtga--catattgcaccatgctgttccaacgtatttgaaaaaattaa--attcaaatacagcaactcacttgattttttgattaaaaacatcaattacagctgacatgtttgaacaacatgctcaaaacaggctggaaagatgtcaagtgccgaaaaatcaaattttaaaaatggataattaccgattgtcaattttcaggctgattttgagcccttttttcaaaattgtcagctatagttgatgcatattttcagatatattaactgattttctc
s caePb3.Scfld02_0       3160012 230 +  4147112 --------------ATTGAT-------------------ACGATTAA-------------TCTGTTTAGATTCAATTCATAGTGATTCATATAATA-------GAtccacaattttttggaagatggaTTCTTCGAGAACAACAACT-------TTTGTTTAT-AAAATCAT-----------------------------------------------AGAGGTCTTGTGATGAAAGAACATA----------GAATGATTCACTCTGATCCAGtttcttccatatttt-------tttgtcaaaaatgt-aTATAATGTTAAGATTTATTTATGGGTA-GTTAGTTGATTTTCTA
i caePb3.Scfld02_0      C 0 I 69
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I
e caeSp111.Scaffold409    116873 239 -   201088 I
e caeRem4.Crem_Contig0   1787108 188 -  4500979 I

a score=0.000000
s ce10.chrX              4909927 97 + 17718866 tattttaatattaatttccaacaaccaacgttcaaaaaacatggcgcaataggaattttttgtagaattaccaaaaaTAATTGAACTCAAAACGAAC
e caePb3.Scfld02_0       3160242 69 +  4147112 I
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I
e caeSp111.Scaffold409    116873 239 -   201088 I
e caeRem4.Crem_Contig0   1787108 188 -  4500979 I

a score=-3855.000000
s ce10.chrX              4910024 364 + 17718866 TCAAAAATTTAATTTTTTTTTCGTTTTTTAGTGAATAACCAAGTATCAAAAAGTGAAATTTGTTTAAGTATTGATGTGTTTCAAATTTTCTGGCAATCGGAATTTTCGAAAATTTGAACAGTTTCGATATCCCCTCGTCTCTGGCTATGAGTCACACTGTATGCATTTCCTAACATTTAACATTTTTGAGAAAATTAAAAATTTAAATGAGCTCAAACTATCTTAAATAGCGGAAGCTGTATTTTAGATTTCTTCGACAAAATCGAACATTTTGGATTCTTATCAATTAGTCATACATACATTTCTCGTATGAAACCAGATAGGACCCAATTTGATCTTATAAAATACAAATTTTTGAACAATT
s caePb3.Scfld02_0       3160311 187 +  4147112 TCAAAcattca-----ttttcctcttcttaG--AAAAGTCTAG----GAAAAGTG--------------------GTCATTAATATTTTGCGGT---------------------------------TCTTTCTTAGTATCTTCCAATTGTTGCCACCAAATCGGTGTcctg--------------taagaaaa--aaaaa-------------------------------------------------------------------------ggctctTGTTAGGTATTAGTA------------GTTTGAATCTTGACTAAACCTTAT--AACCTGACCAGATATAga----------ata
i caePb3.Scfld02_0      I 69 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I
e caeSp111.Scaffold409    116873 239 -   201088 I
e caeRem4.Crem_Contig0   1787108 188 -  4500979 I

a score=-6273.000000
s ce10.chrX              4910388 188 + 17718866 TTTCCCAACT---------TCTCAATTTTTCTGGTTCATCACCTTATTGTTATGAAATTTTCTGACTAGAGCTATTCTTTTATAGTCAAAATGTCATCTGAGTTTTTTATTAAAAAAATCAAAAGTTTTAAATTCCAATTTTTTATCATATA---TCTTTGTTCATTATCATTTCATTTTTTGAAAACTGGCACCCAACT
s caeRem4.Crem_Contig0   1787296 155 -  4500979 TTTCCTGCTT---------TCTCAATCTTTTCAAGTTATCAT----------------------GCTACAACTAATCTTTT-CATCCAATAGGTATTTTGAATCGCTTTTTTATA----TATAA----TAAATTC---TTATCTAGaattcgaactttttttttcttactttaaCTTTGTTAGAGAAATAGT-CCTAAC-
i caeRem4.Crem_Contig0  I 188 C 0
s caePb3.Scfld02_0       3160498 109 +  4147112 tttcattcttctgatttagttccattttttttctgaaatcgt----------------------ggTGAagccaaactt----------------------------------------caaaa----aaaactg---ttgtcTGTCATATG-----------TTTTACAGTAGccc---------attctt-ttcaat-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I
e caeSp111.Scaffold409    116873 239 -   201088 I

a score=-379.000000
s ce10.chrX              4910576 24 + 17718866 TTTTGAAAAGTAAAGTAC------------TAACGG
s caeRem4.Crem_Contig0   1787451 14 -  4500979 ----------AGAAGTAG------------CGTCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    117112 36 -   201088 TTTCGAAGTTGACAGTACCAACGGAAGCGGTGACGC
i caeSp111.Scaffold409  I 239 I 4
s caePb3.Scfld02_0       3160607 24 +  4147112 ttccgcgGGTTAAAGTAC------------TGACAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251117 363 + 21540570 I

a score=24196.000000
s ce10.chrX              4910600 278 + 17718866 AAACACAAAGACGG------CCCCCCGGAAAAGTACAAATCATTGTCAACAA-AAGACTGCTTCTATTTGATTTTTTCACGTTCGGTACATGGTTCTCGATAACCTCCCGG---TGTTGACCGCTTCAGTTG-----------ATTGCAGAATGAAAAAAAACTTGTCTGTCATTTGTTCAATCGTTCTCTCTCTCTCTTTCTTACTCTCTATCTTTTTTGA---AAATT---------------------------------------GTC--------------CCCTTAACGTTATCTAAGCC-----------ATTTAAAGTT----------------TAAA------TCAGTTTTACTTTTATTTATAGATGATTTTAGTTT----------------------
s cb4.chrX              10251480 247 + 21540570 -AACAATAAGATGGTATTCTCCACCCGGAAAAGTGCAAATCAGTATCAACAATCGGGCCAAGTTCTTCTGATATAATTC---------------TCTTGCTAACCTCCCAG---TATTGAccgcttctcttttttctctcgccATGATTGATGGAA---ACACGTCTA-------TGTTCgatcgttctttttttt-------tcctcttcattTCTTTTCA---AGAGT---------------------------------------CCC--------------ACCCTCCTCATTTT-----------------GCTTAAAGTC----------------AAAA-----TTCGATATTTATtggattctatttt---------------------------------
i cb4.chrX              I 363 I 374
s caeRem4.Crem_Contig0   1787465 333 -  4500979 -AAATATAA------ATGCGCCCCCCGGAAAAGTGCAAATCAGTGTCAACAA-AAgaccgtttttttcttttttgtttct------tacaTAAGTCTTGATAACCTCCCAG---TATTGACCGCTTCTCTTGTCTTT------ATGATTGAGAAGA---AAACGTGTATTTCGTCTGTTCGGtcgttctttcttttcaatgtCTACCGCCTATTTATTCTCAATTAAAGTTCAGACCAAAACTCAACTGGATTTAACTTTGAAGATAAACTC--------------ACTCCACCCATTTTTAC-CTCGACAAAACCAACCCAATATCATTTTCTCAGCCCCATAAAA---CCTTCAATGCCTCTGCCCTTCACATTT---------------------------------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409    117152 280 -   201088 AAACTTAAAGGCGGTG----CCCCCCGGAAAAGTGCAAATCAGAGTCAACAA-TAGA--------TACTTTTTTGTCT----------AGTTGTTCTCAATAACCTCTCAGTATTATTGACCgcttattttca----------attgttggAAGGA--GAAACGTGTATTTCACTAGTTCGAtcgttctctcttttcaaagtCTGCCCTC--CCTCCCCCCA---ACCCT---------------------------------------CTT--------------CCTATTTTCA--TCTAC-CT-----------AGTTAAGGTC----------------AAAA-----CTCAATGGGATTTTCATTTAAAGATAGACAAACCCAACCCC--TTTTCACCCTGTTTT
i caeSp111.Scaffold409  I 4 C 0
s caePb3.Scfld02_0       3160631 309 +  4147112 AAACACAAAGGCGGTA-----CCCCCGGAAAAGTACAAATCAGAGTCAACAA-TAGACCgaatgtttcttctctttctt--------acATAGTTTTTGATAACCTCCCAGTATTATTGACCGCTTCTATTCA----------ATTGTTGGA-------AAACGTGTATTTCACTAGTTtgatcgttcttttttttcgaagtttgcCCTTCACCTCCACCTT---ATTTT---------------------------------------CTCCAATTTACTCCCAACCTATTCCCACTCCTAC-CT-----------AGTTAAGGTC----------------AAGAAAAATTCTAATGGGATTTTCATTCAAAGATAGACTTACTCCACCCCCTTCTCCACCCTGTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I

a score=-3584.000000
s ce10.chrX              4910878 216 + 17718866 GGCCA----------------------------------------------------------CTCCCCGC----------------GGTGAACCATTTTTCGTCACTTTCAATTTTATTTTATTTTTCAGTTTTTAAAAAAATACAATCAAAAATGT---GATTTTTGAAAAAGAA-------------------AAAAATACATATTACGTCAA----TTTGAATTCGGCA-ACTATATTTTTAGAAATCTAGCAGTGTT------GCAAATTT--TGTGTCACACTATCTCACATCCTCCTCC---GGTTTTTGGTTG-----AAAATAG
s caeRem4.Crem_Contig0   1787802 200 -  4500979 GGTCA----------------------------------------------------------TTCGGTAG----------------AGTAGTTCAG-TTTCGtcactttccatt---tttacttcagtagaggatgattgaat-tttttgaaaatctctgatcttttcaaaaagag--------------------aataga---atgacatcaaaaaatttgtctgcAACT-ATTATTTTG------AACGAGATTCATA---CAATTGAATCTG-TCAATCAGAC-ACCACTgg------tta---tttttctgaaag-----ag-----
i caeRem4.Crem_Contig0  I 4 I 25
s caeSp111.Scaffold409    117432 280 -   201088 GGTGACACCCTCAAATACCATTTTCTCAGCCCATAAAACTCATCACTGCCCTCCCCCCTCTC-TTCTGTAT---CCACTTCGACCACAGTAGTTCAGTTTTCGtcactttccatt---tttaccTTTCCAGTGAATGgtcga----------------------tttttaaaaatagagagagaaaaaaa--acaaaaaatta---atgatgTCAA------AGTATTCCaatgattattttc------aacCAGTTGTatgtttcattcaaatgtA-CAAATCAGAA-ACCACTCGTATTTTTCACTcttattctgaaac-----aaaatag
i caeSp111.Scaffold409  C 0 I 16
s caePb3.Scfld02_0       3160940 300 +  4147112 GGTGACACAGTCAAATACCATTTTCTCAGCCCATAAAACCCATCGCTGCCCTCTTCTCTCCCATTCTACATCTCCCACTTCGACCAGAGTAGTTCAGTTTTCGtcactttccatt---tttacTTTTGTAGTGAATGGTCGAA----TTTAAAAAT-----ACCTTCTCAAAAATAGTTGGATactatactttttgaaaaata---atgacgTCAAGAATATACTGTTCTTGT-ACTAAACAC------AAcctgaaacatt-------caaatttatcaaatcAGAC-ACCACACATGTTTCTTA---TTTATCTGAAACTATGGAAAATAG
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold17934   325739 1030 +   591668 I
e cb4.chrX              10251727 374 + 21540570 I

a score=8674.000000
s ce10.chrX              4911094 23 + 17718866 TATGAA----AGACCGCCCACGCGACC
s cb4.chrX              10252101 23 + 21540570 TACAGA----AAATCACGCACAAGACA
i cb4.chrX              I 374 C 0
s caeRem4.Crem_Contig0   1788027 22 -  4500979 TATAG-----TAATCACGCACAAGACA
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold409    117728 27 -   201088 TATAGAAATCAAATCACGCACAAGACG
i caeSp111.Scaffold409  I 16 C 0
s caePb3.Scfld02_0       3161256 27 +  4147112 TATAAGAATCAAATCACGCACATAACA
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold17934   325739 1030 +   591668 I

a score=77984.000000
s ce10.chrX              4911117 144 + 17718866 TGACCGGATAGTTCA---TCGTCATCCGACCATGTCTTCTAGTA--------TATA------------ATCTCATTTCAGACTACATGTCAGTCATGGAGAAAAAGAATATCACGATGGGCGCCGCCACTAT------CCCACAGAAAGACGATTTTGATTGTTTCAAAAGGT
s cb4.chrX              10252124 166 + 21540570 TGACCGGAtagttcacttttttcataccTCC-CTCTTCCTAGTATTTATTCGTATATTTTacgattatttttcaattcagacTACATGTCAGTGATGGAGAACAAGAAAATCATGTTGGGCGCTGCTACGTT------TCCACAGAATGATGATTTTGATGACTTTCAAAGGc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1788049 140 -  4500979 TGACCGGATAGTTCA------TCATCCGACCAATTCTTCTAGta--------tatatttttcgat----------tttagaCTACATGTCAGTcatggagaaaaagaatatcATGATGGG---TGCTacact------tccaaaaaaagaggattttgaaaactttgagaggT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    117755 139 -   201088 TGACCGGATAGTTCA------TCATCCGACCATTTCTTCTAGtc--------tatc--------tcatttttcatttcagactACATGTCAGTCatggagagaaagagtaTC---TTGGG---CGCTGCTGT------CCCACAAAAAGAGGATTTCGACAATTTCCAAAGGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3161283 146 +  4147112 TGACCGGATAGTCCA------TCATTCGATCATTTCTTCTAGTC--------Tatccatt-cattcttttttcatttcagactaCATGTCCGTCATGGAGAAAAAGAGTATC---CTGGG---CTCTGCTGT------CCCACAAAAGGAGGATTTTGACAATTTCAAAAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   326769 136 +   591668 TGACTGGATAGTTCA----TTTAACACGTGCAA----CCTCGTA--------TAAA------------------TTTTAGACTACACGGCATTTATGGAGAGGAAGAACATTATGATGTC---CGCCACGGTTGTGAATCGCGAGAAGGAAAGTTTGGACGATTTTCAGAGGT
i caeJap4.Scaffold17934 I 1030 I 17

a score=-6525.000000
s ce10.chrX              4911261 29 + 17718866 GAG-TCTTTGGTGATCT--GATTGG---TTGTGCC
s cb4.chrX              10252290 32 + 21540570 aag-tttctcattttttccagaaga--tttgTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1788189 27 -  4500979 GAG-TTT-TAAtgtt----agaaaa--attgattc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    117894 30 -   201088 ATG-TTC-AGATGCACTGTACCTGG---TTAATCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3161429 34 +  4147112 AAGCTTT-TCATGAATTATAAGAAGATATTAACCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   326905 17 +   591668 I

a score=161825.000000
s ce10.chrX              4911290 283 + 17718866 TT-ACTCCCAATTGAAGAAATTTCAGAGCCGACGTGAAAAAGTTGTCGGAAACGATGAATCAACAAGAAGTCGCCGAGTATCTTGTGCAGGAGGAAGAGCTTCGTCAACTGCTTAAGCAAC---------------------------------------------------------------AGAAAAATTTGCGAGCAATTCTGAAGCCGATGATCGCTGCAAACTGGCCGCAACAATACCAACTTGAGCTCAAGAAATCGCACAAGCTGAAGGCTTCGCTAGCAGCTACAAAAGAAGCAATCAACAAGACTAGAAGGTAAG-----ATC----TTTG--------AACTTTGAACTATGC
s cb4.chrX              10252322 304 + 21540570 AT-TATT-----------AATTTCAGAGCCGATGTGAATAAGCTTGCCGAGACAATGACTCCACAAGAAATCGCCGACTACCTTGTTCAGGAGGAGGAGCTCCGCCAGCTTCTCAAGCAACAGGTG-----ACCaa-ccaacta-----------ccgtaatctgatAACCCACATTCTTGTTTAGAAAAATCTCCGTGCTATTCTGAAGCCAATGATTGCTGCTAACTGGCCACAACAATATCAAATTGAGTTGAAAAAATCTCACAAGCTGAAGGCCTCTCTGGCATCTACTAAAGAAGCTATCAAGAAAACGCAAAGGTTAGTGAACACC-------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1788216 308 -  4500979 tC-AATTCcggtt--tgaaatttcagagctGATGTCAAGAAGCTATCGGAGACCATGAATCAACAAGAAATTGCTGATTATCTTGTCCAGGAAGAGGAACTTCGTCAACTCCTGAAACAACAGGTA-----ATGAA--TATCTGTTTGTATGGTTTCGTAATATga------gcaat----ttcagaaaaatcttcgTGCAATTTTAAAACCAATGATTTCTGCCAACTGGCCTCAACAATACCAACTTGAGTTGAAGAAATCACATAAACTGAAAGCATCATTGGCTGCAACCAAGGAAGCAATTAGCAAAACTAATAGGTAAGTGA------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    117924 330 -   201088 GT-TGTC--------AGAGATTTTAGAGCTGACGTCAAGAAACTATCAGAGACCATGAGTCCACAAGAAGTTGCTGAATATATTGTCCAAGAAGAGGAGCTCCGTCAACTTCTCAAACAACAGGTAAAAGCAAATACTCATTTGctaaaaacgtttttttct-------------at----tttagaaaaacctGCGAGCCATTTTGAAACCAATGATTGCTGCCAACTGGCCGCAACAATATCAACTTGAGCTGAAGAAATCTCACAAACTGAAGGCATCTTTGGCAGCTACGAAAGAAGCTATCAACAAAACCAATAGGTAAGTTCTGATctaagtttg--------aaaaagttatgacGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3161463 309 +  4147112 CTGTGTC--------AGAGATTTCAGAGCTGACGTCAAAAAGCTTTCGGAGACAATGGGCCCACAAGAAGTCGCCGAATACATTTGTCAAGAGGAGGAGCTCCGTCAACTTCTCAAGCAACAGGTA-----ACGTGACCATTTTGTGTAAAGTCTCCTCAATcag-------tgaat----ttcagaaaaatctccGCGCCATCTTGAAGCCAATGATTGCTGCCAACTGGCCACAACAATACCAACTCGAGTTGAAGAAGTCTCACAAATTGAAGGCGTCTTTGGCCGCCACCAAGGAAGCTATTGTCAAGACCAATAGGTAAGTAATAATC-------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   326922 300 +   591668 tc-attttcaatttatttgtGTTCAGAACTGATATCAAAACGCTATCCGAAACGATGACCCCACAAGAGATTGTTGAGTATCAGGGCCACGAGGAGGAGCTTCGGCAGCTTTTGAAGCAGC---------------------------------------------------------------AGAAGAATCTGAGAGCGATTCTCAAACCAATGATTGCGGCCAACTGGCCACAGCAGTATCAGCTCGAGTTGAAAAGATCTCATAAATTGAAGGCTTCGTTAGCAGCTACGAAAGAAGCGATTCATAAAACGAAAGAGTGAGTTGGTTTGGACTTTTGTTGTGGTAAAATATGGGTTATGC
i caeJap4.Scaffold17934 I 17 I 242

a score=-2528.000000
s ce10.chrX              4911573 127 + 17718866 CAGACAAAAGAGACCCCGGAAATTATGATGATCATATCGATCCACGTGATTGTGACCACG--------TCGTCCTTTATCTATTGAC------ATTGAGAGTG----------TTCGGCTGATTGC----------------CTTATCAAGGACGTCAC--GTCGAC--CA
s cb4.chrX              10252626 105 + 21540570 ----TGACGTAGTCCCCAGAAG---------------------ACGTGACTA-----------------------CTGT--------------AGTGGCAGTGTTCGGCTGATTTCGGCTGATTACCTCTTTTTACTATTTGGTTATCAAGGGCGTCAC--GTCTTC--Ct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1788524 110 -  4500979 ----------CGTTCCTAGAAATAC-------------TATCCACGTGACCA-------------GTTTTTTCGTGTGT--------------ATTGACGTTGAGTG------TTCGGCTGATTGCCTC-CACTActgttttcttatcaatgaCATTTT--ACCGAC--cg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    118254 151 -   201088 GAGACCAAACAGAACGGGAAAGCAC--GTGATAA-GTGTATCAACACGTCTTCCAGTATC-TCTAGATATTTCTCGTGTTTCTCATTATCTAGAATGACAGTG----------TTCGGCTGATTGCCTC---CCACTATTC-CTTATCAAGGACGTCAC--GTCGTCTGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3161772 131 +  4147112 ---AGGAAACAAATTTGGGAGAAA--------------TATCCTCATGACCACCAAtatcttttctatttttcccatGTTTCCCGTC------AAAGAGAGTG----------TTCGGCTGATTGCCT----CCACTACTT-CTTATCAAGGACGTCACTGGCCGTC--TA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   327222 242 +   591668 I

a score=130339.000000
s ce10.chrX              4911700 431 + 17718866  
s cb4.chrX              10252731 441 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1788634 436 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    118405 427 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3161903 438 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   327464 512 +   591668  
i caeJap4.Scaffold17934 I 242 I 50

a score=12120.000000
s ce10.chrX              4912131 28 + 17718866 TTA--CATTTTCCCACGAATCACTTTTTTC
s cb4.chrX              10253172 30 + 21540570 TTGAACATTTTCTTACGAAGCacgttttgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1789070 27 -  4500979 tt---tgttttcccACGAATCACTTTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    118832 30 -   201088 tcgatatttttcccacgaatcacttttttt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3162341 29 +  4147112 TTG-TATTTTTCCCACGAagcacttttctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   327976 50 +   591668 I

a score=44454.000000
s ce10.chrX              4912159 498 + 17718866  
s cb4.chrX              10253202 552 + 21540570  
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   1789097 539 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold409    118862 548 -   201088  
i caeSp111.Scaffold409  C 0 I 4
s caePb3.Scfld02_0       3162370 561 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   328026 586 +   591668  
i caeJap4.Scaffold17934 I 50 C 0

a score=-3644.000000
s ce10.chrX              4912657 17 + 17718866 CGCGCATAATTTATTG--A
s caeRem4.Crem_Contig0   1789642 17 -  4500979 CCCTAGTGATTTATAG--T
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409    119414 16 -   201088 ---ACTTGATTGATAGTCT
i caeSp111.Scaffold409  I 4 C 0
s caePb3.Scfld02_0       3162934 14 +  4147112 ---atATGATTTATAA--T
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   328612  7 +   591668 ----TGGGGTT--------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10253754 20 + 21540570 I

a score=281510.000000
s ce10.chrX              4912674 335 + 17718866 CGCTTACCTCTCCTTCTTTGTTGTAGAGAGTAGTAACGACGTCGTTTCCGGTGCCGAACGAGTCTTCGAGGTCGTACACAAGACTATCGGGTGGGGAATGAACTCCCTGCCCACGTGCGAAAATTTTCACGCTCTTTTGAGCACGAAGGGTGAACTCGCGCGGGAAGGTGAACACGATTTCGCGTTTTCCGGCAATCTTCCGACGGAGTTTCCAGTCTCCGATGTTCTCATCACGTCTTGAGATGTTCTCCAGTACAATGTACTTTCCAGATGGCTCGGCTTCCTGAAAATGGTGGATTTTTTTCTTGCAAAAATGAAAAATCGAAAACACTGTT
s cb4.chrX              10253774 296 + 21540570 CTCTTACCTCTCCCTCTTTGTTATAAAGAGTAGTCACGACGTCGTTTCCGGTACCAAACGAGTCTTCGAGGTCAAACACAAGACTATCTGGTGGCGAGTGGATTCCTTGACCGCGAGCAAAAATCTTCACATTCTTCTGAGCACGTAGAACGAATTCGCGAGGGAAGGTGTAGACGATTTCACGCTTTCCAGCTATCTTGCGACGCAATTTCCAGTCACCAATGTTCTCGTCGCGTCTGGCAATGTTCTCCAGAATGATAAACTTTCCAGTTGGTTCAacctcctgaaaa------------ttgaaa---------------------------
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   1789659 304 -  4500979 TGCTTACCTCTCCTTCTTTGTTATAGAGAGAAGTAACGACGTCGTTTCCGGTGCCAAACGAGTCTTCGACGTCGTACACAAGACTGTCTGGTGGGGAGTGGATACCTTGACCACGAGCAAAGATCTTCACATTCTTCTGAGCACGAAGAGTGAATTCACGTGGGAAAGTGAACACGATTTCACGTTTTCCTGCTATCTTACGACGAAGTTTCCAATCCCCGATGGTCTCATCACGTCTAGAGATGTTCTCCAGGACAATGTACTTTCCTGATGGTTCCACttcctagaaa------------tcaacg-------------------acaCCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    119430 302 -   201088 CTCTTACCTCCCCTTCTTTGTTATAGAGAGTAGTAACGACGTCGTTTCCGGTACCGAACGAGTCTTCGAGGTCGTACACAAGGCTGTCTGGTGGTGAATGGACTCCTTGACCACGAGCAAAGATCTTCACGTTCTTCTGAGCACGAAGAGTGAACTCGCGAGGGAAAGTGAACACGATTTCACGTTTTCCAGCTATCTTACGACGCAATTTCCAATCTCCGATATTTTCGTCACGTCTTGAGATATTCTCCAAAATAATGTGTTTTCCAGATGGTTCAACTTCCTATGAAT-----ACTCAtttgtt----------------------------
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3162948 302 +  4147112 TTCTTACCTCTCCTTCTTTGTTATAAAGGGTAGTAACAACGTCGTTTCCGGTGCCGAACGTGTCTTCGAGGTCGTATACAAGGCTGTCTGGTGGGGAATGAATTCCTTGACCACGAGCAAAGATCTTCACATTCTTCTGAGCACGAAGTGAAAATTCACGGGGGAATGTGAAAACGATTTCACGTTTTCCGGCTATCTTACGACGCAATTTCCAGTCTCCAATGTTCTCATCACGTCTAGAGATATTCTCCAAAATAATGTATTTTCCTGATGGTTCGACTTCCTATAAAA-----ATTCCGTTGTT----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   328619 283 +   591668 ---TTACCTCTCCATCCTTATTGTAGAGAGTAGTGACGACATCGCTTCCGGTGCCGAACGAGTCTTCCTGGTCGTACACAAGACTGTCTGGTGGCGAATGGACACCTTGCCCGCGGGCAAAGATCTTTACGCTTTTCTGAGCACGGAGCACAAAGTCACGCGGGAAGTTGAACACAATCTCACGCTTTCCGGCAATCTTACGACGCAGTTTCCAGTCGCCAATGTTCTCATCGCGTCTTGCAATGTTCTCCAGGACAATGTACTTGCCAGCGGGTTCCACttccta-------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=-6146.000000
s ce10.chrX              4913009 43 + 17718866 TTCAGAAATTTGGGCACGG----CCACTTTAAGGAAAGTTTTTGTTC
s caeRem4.Crem_Contig0   1789963  3 -  4500979 --------------------------------------------TTC
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold409    119737  8 -   201088 ---------------------------------------ttttgttc
i caeSp111.Scaffold409  I 5 I 12
s caeJap4.Scaffold17934   328902 16 +   591668 ----------------cagtaacccatttTAA---------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e cb4.chrX              10254070  0 + 21540570 C

a score=0.000000
s ce10.chrX              4913052 20 + 17718866 AGCATGATCCGACATATATT
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e caeJap4.Scaffold17934   328918  0 +   591668 C
e cb4.chrX              10254070  0 + 21540570 C
e caeSp111.Scaffold409    119745 12 -   201088 I
e caeRem4.Crem_Contig0   1789966  6 -  4500979 I

a score=-4449.000000
s ce10.chrX              4913072 62 + 17718866 TGGTTTTGCACAGGACTAGGTTCTGAGTGAGCAGCGAACCCGGTTAATGTCGGATCATGCAA
s cb4.chrX              10254070  4 + 21540570 --------------------ttct--------------------------------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   328918 13 +   591668 -------------------------------------------------ACTAGGTATGCGA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e caeSp111.Scaffold409    119745 12 -   201088 I
e caeRem4.Crem_Contig0   1789966  6 -  4500979 I

a score=103.000000
s ce10.chrX              4913134 42 + 17718866 AATCGTCACACCAGGCACATATTTCTAAATTTTGTGCACGGC
s cb4.chrX              10254074 20 + 21540570 ------------------atgATTTCAAATTC----CACGGC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e caeJap4.Scaffold17934   328931  0 +   591668 C
e caeSp111.Scaffold409    119745 12 -   201088 I
e caeRem4.Crem_Contig0   1789966  6 -  4500979 I

a score=0.000000
s ce10.chrX              4913176 27 + 17718866 CATTTTGAAGAATAGTCATTTTCTGAA
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e caeJap4.Scaffold17934   328931  0 +   591668 C
e cb4.chrX              10254094  0 + 21540570 C
e caeSp111.Scaffold409    119745 12 -   201088 I
e caeRem4.Crem_Contig0   1789966  6 -  4500979 I

a score=-1607.000000
s ce10.chrX              4913203 61 + 17718866 GTGTTCAGTGGAAATTGCAGGCAAAAACTCGCTCAAAAAATGTCCATGATTGCTTTCAAAA
s caeRem4.Crem_Contig0   1789972  5 -  4500979 gtgtt--------------------------------------------------------
i caeRem4.Crem_Contig0  I 6 C 0
e caePb3.Scfld02_0       3163250  0 +  4147112 C
e caeJap4.Scaffold17934   328931  0 +   591668 C
e cb4.chrX              10254094  0 + 21540570 C
e caeSp111.Scaffold409    119745 12 -   201088 I

a score=333.000000
s ce10.chrX              4913264 5 + 17718866 TTTTG
s caeJap4.Scaffold17934   328931 5 +   591668 TTTTA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3163250 0 +  4147112 C
e cb4.chrX              10254094 0 + 21540570 C
e caeSp111.Scaffold409    119745 12 -   201088 I
e caeRem4.Crem_Contig0   1789977 0 -  4500979 C

a score=-991.000000
s ce10.chrX              4913269 9 + 17718866 CTATAATTG-
s caeRem4.Crem_Contig0   1789977 3 -  4500979 ------ttg-
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3163250 9 +  4147112 CTTCAATTG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   328936 9 +   591668 -TTAGATTCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10254094 0 + 21540570 C
e caeSp111.Scaffold409    119745 12 -   201088 I

a score=-10901.000000
s ce10.chrX              4913278 45 + 17718866 TTTTTTTCAGAATATACATCAATTTTTGGGATGTAATTTCCACTC---
s cb4.chrX              10254094  9 + 21540570 ----------------------TCT-----------CTTTCA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1789981  9 -  4500979 ----------------------ttt-----------tttcaa------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3163259 30 +  4147112 TCTTTTGTGATATGTG-ATCTAATT-----------TCTCAA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   328945  8 +   591668 -------------------------------------TTTCA---CTT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    119745 12 -   201088 I

a score=70685.000000
s ce10.chrX              4913323 71 + 17718866 ACCTGAATTGCAATATTTCCTTTTGCTGATCTGGAATACGACGAATGACTAGTCGTTTCACCTTTGAGAAC
s cb4.chrX              10254103 71 + 21540570 ACCTGAATAGACACATTTCCTTTGGCAGATCTGGAATACGAAGAGTGGCTGGTAGTTTCTCCTTTGAGTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1789990 71 -  4500979 acctgaATAACAACATTTCCCTTGGCCGATCTGGAGTAGGAGGAGTGACTAGTCGTTTCTCCTTTAAGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    119757 71 -   201088 acctgAATGACAACATTTCCCTTCGCTGATCTGGAGTAAGAAGAATGACTAGTTGTCTCTCCTTTAAGGAC
i caeSp111.Scaffold409  I 12 I 1
s caePb3.Scfld02_0       3163289 71 +  4147112 ACCTGAATAACAACATTTCCTTTTGCAGATCTGGAGTACGACGAATGGCTGGTTGTCTCTCCTTTGAGGAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   328953 71 +   591668 ACTTGAATCACCACGTTGCCCTTTGCAGATCGGGAGTACGAAGAGTGACTGGTTGTTTCTCCTTTAAGAAC
i caeJap4.Scaffold17934 C 0 C 0

a score=910.000000
s ce10.chrX              4913394 1 + 17718866 T
s cb4.chrX              10254174 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1790061 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3163360 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   329024 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    119828 1 -   201088 I

a score=92822.000000
s ce10.chrX              4913395 237 + 17718866 CGAAGACTCTCTGCA--------------------ACAAAACACAAA-----------------AACTG---ATATAAATTTGCAACTAACAATGCCTCGTG----------------ACACCTATTA---------------------CTCCT-------ATTAATCTTACCGTGCGGCTTTCTGCGAATTTTATCACCGACAAGGTAATGGGTATGGGGAACGTCGTCAAAAGTGATAGTCTCGTATTGAGAACAATGAATTTCTGGCATGTT------ACTTTTTTGGGTTAAAGATGAAACAATGCTGTT---CCAAATC---AAA--AGT
s cb4.chrX              10254175 293 + 21540570 CGAAGGCTCTCTGTAATTTGCATTCTTAATTCCAATTTCAATatttaattccaaaattttctggaagtt------tcacttttca---aaaaattgaaaaatcaaaacaccAAACACGGGTCTTGTGA---------------------TTTTTCCGTGTAACTAATCTTACCGTATGGCTTTCTTCGAATTTTATCACCGACCAAGTAATGGGTATGGGGAACCTCATCAAAAGTAATTGTCTCGTACTGAGAACAATGAATCTCTGGCATTCT--------TAACAAGAGAGAGGGATAAGAAGAGAATAAT---GAGTGGTGG-GAAACAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1790062 230 -  4500979 CGTAGACTTTCTGTA------------------AAACAAAACACGTA-----------------TACTC------TCATTCTGCAAC-AAAAACCGAACGAT--------------CTGGTCTTGTGA---------------------CTCTC-------ATAAATCTTACCGTATGGCTTTTTGCGAATTTTATCGCCGACAAGGTAATGGGTATGGGGAACCTCATCAAAAGTGATTGTCTCGTACTGAGAACAATGAATCTCAGGCATTTT---------------GGTTTAGGATAAGATAGTACTGTC---ccaaaatgg-aaa--agt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    119829 238 -   201088 CGCAGACTTTCTGTA------------------AAACAAAACacacatttctcaaaa-------acatg------CAGTGttgca---aaaaatcaaacgaC----------------GGTCTTGTGA---------------------CTCTC-------ATAAATCTTACCGTATGGCTTTTTGCGAATTTTATCACCGACAAGGTAATGGGTATGGGGAACCTCATCAAAAGTGATTGTGTCGTATTGAGAACAATGAATCTCAGGCATTTT---------------CGTTTAGAAACAGAGAGTGAGGGATGTTcaagata--aaa--aga
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3163361 221 +  4147112 CGCAGACTCTCTTTA------------------Agaaacaaaacacatttt-------------aCGTG----------ATTGCA---GAGAAAAGATAGAG----------------AATCTTGTGA---------------------CTCTC-------ATAAATCTTACCGTATGGCTTGATTCGAATTTTATCACCGACTAAGTAATGGGTATCGGGAACCTCATCAAAAGTGATAGTTTCGTATTGAGTACAATGGATTTCGggcatttt---------------------gaaaagaagagaaatgta---CCAAAATGGCAAA--AGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   329025 264 +   591668 CGAAGGctttctgta------------------aaaaaaaaacaata-----------------gactTACTATTAAACCTTaaa---aaaaaGCCAATAAC----------------GGAATCAAGAACTACTGCTAGCAATTAAGGTCTCCT-------ATTA--CTTACCAGCTGGCTTTCTGCGAATTTTATCACTGACTAAGTAATGTGTATCAGGAATATGATCAAAAGTAATCGTCTCAAACTGAGAGCACTGAATTTCAGTCATTCTTACTCTCTCAATTGGCTGTCAAAGTGAAATTAGTCCGGT---CTATATG---AGA--TGT
i caeJap4.Scaffold17934 C 0 I 65

a score=3522.000000
s ce10.chrX              4913632 71 + 17718866 AAAGCGATTAAATAGGAGTACTAAATTGACCAAGGTATATCAA--CAA-----GGGGACACACCCA---GCGGTCTCTCTG-----
s cb4.chrX              10254468 67 + 21540570 GAAATGATTAAAtaga------aagttttt--------ttagaaCCGG-----AGGGACACACCCAACCAAAAACTGACTACCATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1790292 67 -  4500979 gaaatgatTAAATACG------AAATTTGT---GATGATTGGA--CAA-----GCGGACACACCCA---AAACGGTCGTTTTGGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    120067 54 -   201088 gaaatggttAAATGGG------TAATTGGT-------TTGAGA--C-------ACGGGCACACCCA---AGGAT--TGTTG-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3163582 63 +  4147112 AAGGTGATTAAATAGG------TAATTGGT-------ATTGGC--CGGGCACAACGGACACACCCA---AAAATACTGTTG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   329289 65 +   591668 I

a score=19890.000000
s ce10.chrX              4913703 81 + 17718866 GGCGGAAAACAAT------AATAAAG-TTACGTTACACAGTTTGGTGACCGCATGACTTGAAAACTTGAAACAAGTTATCA---------GTGGACG
s cb4.chrX              10254535 69 + 21540570 ATCAGCAAATAAC------AATAAAG-TTGAGTTACACTGTTG----ACCGCATG--------ACTTGAAACAAGTTATCG---------ACCAACG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1790359 73 -  4500979 GTCAGCAAACAAC------AATACTG-ATGAGTTACACAGTTAGGTCACCACATG--------ACTTGAAACAAGTTCTTA---------ACTTCGG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409    120121 84 -   201088 GGCggtaaacaaaa-----aatacaatttgaAGTTCACAGTTATGTGGCCGCATG--------ACTTCAAACAAGTTCTAATGATAAAAGATCAAAA
i caeSp111.Scaffold409  C 0 I 13
s caePb3.Scfld02_0       3163645 68 +  4147112 GGCGGAAAATAACAATACTAGTACAGTTTG------------TTGTGGCCACATG--------ACTTGAAACAAGTTATCA---------ACCAAAG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   329354 57 +   591668 AACAGTAAACAAT------ATTACAG-TTAAATTCCACCATTTTGTGACCACATG--------ACTTGACTT-------------------------
i caeJap4.Scaffold17934 I 65 C 0

a score=-2037.000000
s ce10.chrX              4913784 19 + 17718866 TATACT--TTAAATTTTAACC
s cb4.chrX              10254607 21 + 21540570 AGAaccaatttgatttttgat
i cb4.chrX              I 3 I 18
s caeRem4.Crem_Contig0   1790436 21 -  4500979 AAAACTAATTCAGTTTTAAGT
i caeRem4.Crem_Contig0  I 4 I 35
s caeSp111.Scaffold409    120218 13 -   201088 --------TTCCATTTCTGAA
i caeSp111.Scaffold409  I 13 I 2
s caeJap4.Scaffold17934   329411 16 +   591668 ----TCGTTCTTATTTTCAC-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3163713 10 +  4147112 I

a score=287099.000000
s ce10.chrX              4913803 350 + 17718866 GTAATTTGTGGT-CATC---GTAACGTGAAGTA-AACATTGAGTATACGCGAACCTACCAATTTCCTTGGTTTGATGAATAGATGTTGTCTTAACAACCTGCTCGACGAGCTGACGTAGACCTGCGCGATTCTCTTCTCCATCAAGCATCTTACGGTAGATCACAATTTCAGCATCGAGAGTCTGTTTTGTATCAATGAGCATTTGAAGCTCAACCATCAGGATCTTGCTCTCGTCACGAAGTTTGTTGATCGATGTGTCCTTATCGTTCAGTGATTGTTCATATGATCTCATATCCTCTTCCATCTGGTAGTTGAGGTCTTCGATTTGTTTTTCGAGGAGAAGATTCTGAAA----T-G
s cb4.chrX              10254646 323 + 21540570 Ggaa---------gatt---aaaattttttg-------------------agacttaCCAATTTCTTTAGTTTGGTGGATAGATGTAGTTTTGACGACTTGTTCAACTAATTGTCGGAGACCTGCACGATTCTCTTCTCCGTCTAGCATCTTACGGTAGATCACAATTTCAGCATCCAGGGTCTGTTTGGTATCAATCAACATTTGAAGTTCAACCATCAGAATCTTGCTCTCATCACGGAGTTTGTTGATCGACGAGTCCTTATCATTCAGCGATTGCTCATAAGTTCTCATATCCTCTTCCATTTGGTAGTTGAGGTCTTCAACTTGTTTCTCCAGGagtagattctgaaa----t--
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   1790492 319 -  4500979 TGAA---------ATCT---GGGATTT------------------------GACTTACCAAGCTCTTTGGTCTGATGGATCGAGGTAGTCTTGACAACTTGTTCAACAAGTTGACGGAGTCCTGCACGATTCTCTTCACCGTCCAACATCTTACGGTAGATAACAATTTCTGCATCGAGGGTCTGCTTGGTATCAATCAACATTTGAAGTTCAACCATCAAGATCTTGCTCTCATCTCGGAGTTTGTTGATTGAAGTATCCTTATCATTTAACGATTGCTCGTATGATCTCATGTCCTCTTCCATTTGGTAGTTGAGATCTTCAATTTGTTTCTCGAggagaagattctggaa----ta-
i caeRem4.Crem_Contig0  I 35 I 33
s caeSp111.Scaffold409    120233 331 -   201088 -------------GTTT---GAAACTtgttg-------ttcaaaaaac-aaaacgtaCCAATTTCCTTGGTTTGATGAATGGAAGTAGTCTTCACAACCTGCTCAACTAGTTGACGGAGTCCTGCACGGTTCTCTTCTCCATCAAGCATCTTGCGATAAATGACGATTTCGGCATCCAATGTCTGTTTCGTATCAATCAACATTTGCAGTTCAACCATCAGAATCTTGCTCTCATCACGGAGTTTATTGATGGAAGTGTCCTTATCATTCAACGATTGTTCGTATGATCTCATATCTTCCTCCATTTGGTAGTTGAGATCTTCGATTTGTTTCTCGAGAAgcagattctgaaa---at--
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3163723 353 +  4147112 GTAATTTTTGGTCACTT---GGAACGGATTGAA-CGGTTTGAACTGAT-TAGACTCACCAAGCTCCTTTGTCTGATGAATAGAAGTAGTTTTGACGACTTGTTCAACGAGTTGCCGGAGTCCGGCACGATTCTCTTCTCCATCAAGCATCTTACGGTAGATCACAATTTCAGCGTCCAAATTCTGCTTTGTATCAATCAACATTTGGAGTTCGACCATCAAAATCTTGCTTTCGTCTCGGAGTTTGTTGATAGAACTGTCCTTATCATTCAAAGACTGCTCATACGATCTCATATCCTCTTCCATTTGGTAGTTGAGGTCTTCGACTTGCTTCTCAAGCAGAAGGTTCTGAAAGACGT--
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17934   329427 349 +   591668 -TAATTTCTGATCACTCAGGGGAACTTTTAAAAGAAAACCAAGGGTGC---AACATACCGATTTCTTTTGTCTGGTGGATGGAAGTTGTCTTGATAACCTGCTCAACAAGTTGCCGAAGTCCAGCACGATTCTCTTCACCGTCCAACATCTTACGATAAATTACAATTTCAGCATCAAGAGTTTGCTTAGTATCAATCAACATTTGAAGTTCGACCATCAAAATCTTGCTCTCATCACGGAGCTTGTTAATTGAAGTGTCCTTATCGTTCAACGATTGTTCATACGATCGCATATCCTCTTCCATTTGGTAGTTCAGGTCTTCAATTTGCTTTTCAAGGAGCATGTTCTGAAA-------
i caeJap4.Scaffold17934 C 0 C 0

a score=-12292.000000
s ce10.chrX              4914153 33 + 17718866 -----TTGACAAATAATATCAGATGTA---------TATAGTCATCA
s cb4.chrX              10254969 36 + 21540570 -----tggccgttttttatttgattttgtaaatttttgtgA------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    120564 29 -   201088 -----tcaatgtGATTAATGTGA-------------TGAGATCAGGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3164076 26 +  4147112 -----TACACAAATTTACTG----------------TTAGACCCCAA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   329776 42 +   591668 AACAATtacttaaaattttctggtaGGTTAGG----TTTGGTCCTC-
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1790811 33 -  4500979 I

a score=185111.000000
s ce10.chrX              4914186 194 + 17718866 AAACGAACTCTTCCTTCTAGATCCGCCATCTTTCCACGCATATCACCAAGTGTTGTGCGGAGTCTCTTAACTTCCTCGCGAGCATAATTCTGCTCCAAGCAGTTGCGAGAATTTTGAGTGTGAATTTCTTGAACCTTCAGCTTGTACCAAGACTCGATGTCAGTACGGGTAGTGTTGCTCACCTGTAATTCAAG-----
s cb4.chrX              10255005 189 + 21540570 GAACTAACTCTTCCTTCCAAATCTGCCATCTTGCCACGCATGTCTCCAAGTGTGGTGCGAAGTCTCTTGACTTCTTCGCGAGCATAATTCTGCTCCAAGCTATTACGTGATGCTTGAGTATGAATCTCCTGGACCTTGAGTTTGTACCACGACTCGATGTCAGTACGGTGGGTATTGTTTACCTGAAAA----------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1790844 189 -  4500979 GAACTAACTCTTCCTTCCAGATCAGCCATTTTTCCACGCATGTCTCCGAGGGTGGTACGAAGTCTCTTGACCTCTTCTCGGGCATAATTCTGTTCAAGACTGTTGCGAGATGCTTGAGTGTGGATCTCTTGCACTTTGAGTTTGTACCACGACTCAATATCGGTGCGGTGGACGTTGTGAACCTGAATA----------
i caeRem4.Crem_Contig0  I 33 I 6
s caeSp111.Scaffold409    120593 187 -   201088 --ACTAACTCTTCCTTCCAAATCAGCCATCTTTCCACGCATGTCTCCAAGTGTGGTTCGAAGTCTCTTGACCTCTTCACGAGCATAGTTCTGCTCCAAACTGTTACGAGAGGCTTGAGTGTGAATTTCTTGAACTTTCAGCTTGTACCACGACTCAATGTCAGTGCGGTGGGTGTTGTTAACCTGAACT----------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3164107 194 +  4147112 ACACTAACTCTTCCTTCCAAATCTGCCATCTTTCCACGCATATCTCCAAGAGTGGTACGGAGTCTCTTGACTTCTTCACGAGCATAGTTTTGTTCCAAGGTGTTGCGGGATGCTTGCGTATGAATCTCCTGTACTTTGAGTTTGTACCAAGATTCAATGTCAGTACGATGGGTGTTGTTGacctgaaaatcatg-----
i caePb3.Scfld02_0      I 5 I 17
s caeJap4.Scaffold17934   329818 188 +   591668 ------ACTCTTCCTTCCAAATCAGCCATCTTTCCACGCATGTCTCCGAGAGTAGTACGAAGCCTCTTAACCTCTTCGCGAGCATAGTTCTGCTCCAAAGTGTTGCGAGAAGCTTGAGTATGAATCTCCTGAACCTTTAGTTTGTACCACGACTCAATGTCGGTACGCTGGGAGTTGCTGACCtgaaac-----aagaa
i caeJap4.Scaffold17934 C 0 C 0

a score=-6074.000000
s ce10.chrX              4914380 12 + 17718866 TCTCTATTTTTT---------
s cb4.chrX              10255200  2 + 21540570 ------TT-------------
i cb4.chrX              I 6 I 1
s caeRem4.Crem_Contig0   1791039  6 -  4500979 ------TCGCCT---------
i caeRem4.Crem_Contig0  I 6 I 2
s caeSp111.Scaffold409    120780 12 -   201088 ATCCTGTTTTCT---------
i caeSp111.Scaffold409  C 0 I 5
s caeJap4.Scaffold17934   330006 12 +   591668 ---------aataaatagaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3164301 17 +  4147112 I

a score=107065.000000
s ce10.chrX              4914392 141 + 17718866 -ACCTCTT--TTAATGACTTTTCT---CACATGATCATATTCGCTTCTGATCTCACGAATAGCAGAGGATAACTCATTCTTGAAATATTCGCGGTTTTCCACCGTAGTATCACGAGATGCCATAGCGAGAAGATCGTGGATTTCCTG
s cb4.chrX              10255203 140 + 21540570 -AATACAT--TGAACAATGTTTTGGATTACATGATCATATTCGCTTCTGATGTCACGAATGGCGGAAGACAATTCGTTCTTGAAGTATTCGCGGTTTTCAACAGTGGTGTCACGAGAAGCCATGGCAAGAAGGTCgtggattt----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1791047 138 -  4500979 -AGTACATTATGAGTGACG--------TACCTGGTCGTATTCACTTCTGATGTCACGGATAGCAGAGGAGAGTTCATTCTTGAAGTACTCACGGTTCTCAACAGTGGTATCACGGGAAGCCATTGCAAGAAGATCGtgaatttcctg
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409    120797 136 -   201088 -acttgaa--aacaaaaca--------tacTTGATCGTATTCGCTTCTAATATCACGAATAGCAGACGAAAGTTCATTCTTGAAATACTCGCGGTTTTCAACGGTTGTATCACGGGAAGCCATCGCAAGAAGATCATGAATTTCCTG
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3164318 134 +  4147112 ---TTTAT--GGAATGGGA--------TACCTGGTCATATTCACTTCTGATGTCACGGATTGCTGAAGACAACTCGTTTTTGAAGTATTCACGGTTCTCAACAGTTGTATCACGCGAAGCCATTGCAAGAAGATCATGGATTTCCTA
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17934   330018 137 +   591668 aattcaaa--aaaatagta--------tACTGTATCATATTCGCTTCGAATTTCTCTAATAGCAGATGAGAGCTCGTTCTTGAAATATTCGCGGTTTTCTATAGTCGTATCGCGGGAAGCCATAGCAAGAAGGTCGTGGATTTCCTG
i caeJap4.Scaffold17934 C 0 I 45

a score=-5814.000000
s ce10.chrX              4914533 37 + 17718866 AAAAA-GACACTCGTTGAAAGCTGTACTAATTGTTTTT
s caeRem4.Crem_Contig0   1791185 37 -  4500979 aaaattgatgggGAATAT-Gccacaacttttttatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    120933 32 -   201088 AAATG-GTTTGCTACCGTAGTCATATT-----AATTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3164452 36 +  4147112 AAATATACTTGTGATTG--Atcagatttcagaatttcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   330155 45 +   591668 I
e cb4.chrX              10255343  0 + 21540570 C

a score=616075.000000
s ce10.chrX              4914570 774 + 17718866  
s cb4.chrX              10255343 757 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1791222 765 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold409    120965 763 -   201088  
i caeSp111.Scaffold409  C 0 I 35
s caePb3.Scfld02_0       3164488 769 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   330200 769 +   591668  
i caeJap4.Scaffold17934 I 45 C 0

a score=-987.000000
s ce10.chrX              4915344 2 + 17718866 TT-
s cb4.chrX              10256100 1 + 21540570 -T-
i cb4.chrX              C 0 I 128
s caePb3.Scfld02_0       3165257 2 +  4147112 at-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   330969 2 +   591668 -TG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    121728 35 -   201088 I
e caeRem4.Crem_Contig0   1791987 35 -  4500979 I

a score=691.000000
s ce10.chrX              4915346 4 + 17718866 TGAA
s caePb3.Scfld02_0       3165259 4 +  4147112 agaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   330971 4 +   591668 TGAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10256101 128 + 21540570 I
e caeSp111.Scaffold409    121728 35 -   201088 I
e caeRem4.Crem_Contig0   1791987 35 -  4500979 I

a score=-5834.000000
s ce10.chrX              4915350 449 + 17718866 TTTTTGGAAGTCAGTTTTTGTAGTTTGAAGTAGTTTTTAAACGTGTATCAGAACTGAAAAATAACACTTGACAAACATGACCATAAAACAAAAAAAATTTGTAGGTTTTCCAGAGGAATCAATTCATTAATGttaataattttttaacactttttaaatttttatttttaaCTTTACAGTCAAAAAAGTTCACTTAATCATTTTTCACCAATCATAATTTTGGTAGTGAGACAATAAAACATTCCACAAGTTTTTTCTTTTAATTGAATTTTAATTGATTTTATTTGTACATTTTGAAAGTTCAGATCAGCAAAAATGTT----CAAAACTTCTCAAAAGGTCAGGGTTGTTGTTTGAACGTTTGGCATATTGCCAATTGAATATTGTAAAACATAAATTAAAACATTTGGAGGGtttaattttaatataaatcatataatacatcatataat
s caePb3.Scfld02_0       3165263 206 +  4147112 aatt---gagtgtgtttttgattttcagtgttgTCTT-------------------------------------------------------GGAAATTAGTTAGCTT----GAGATATC----------------------TTTGA-----TTCAAATTC---TTTGCAACtctttgaccgaaaaaa-------aaacagttttcg----------------------------------------gagctttt------------------------------------ttcagaaaactcat-tcATAAAAAGTGTcttgatatattttttcaaaaagctgtGG--ATTCTTCGAA----------------------------------------TACAACTTTTGAAAGCTGT-----------------------------TACACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   330975   0 +   591668 C
e cb4.chrX              10256101 128 + 21540570 I
e caeSp111.Scaffold409    121728  35 -   201088 I
e caeRem4.Crem_Contig0   1791987  35 -  4500979 I

a score=-49.000000
s ce10.chrX              4915799 28 + 17718866 acaattttaaaGACAAAGTACTGCTCAT
s caePb3.Scfld02_0       3165469 18 +  4147112 ACACTATtagaaataaag----------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   330975 28 +   591668 ACAATTATATCGGTAGCGGACGAAACAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10256101 128 + 21540570 I
e caeSp111.Scaffold409    121728 35 -   201088 I
e caeRem4.Crem_Contig0   1791987 35 -  4500979 I

a score=-227.000000
s ce10.chrX              4915827 18 + 17718866 ATTCAAAATATTCATCTG
s caeJap4.Scaffold17934   331003 13 +   591668 GTT----ATATTTATGT-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3165487  2 +  4147112 I
e cb4.chrX              10256101 128 + 21540570 I
e caeSp111.Scaffold409    121728 35 -   201088 I
e caeRem4.Crem_Contig0   1791987 35 -  4500979 I

a score=0.000000
s ce10.chrX              4915845 3 + 17718866 AAA
e caePb3.Scfld02_0       3165487 2 +  4147112 I
e caeJap4.Scaffold17934   331016 0 +   591668 C
e cb4.chrX              10256101 128 + 21540570 I
e caeSp111.Scaffold409    121728 35 -   201088 I
e caeRem4.Crem_Contig0   1791987 35 -  4500979 I

a score=343729.000000
s ce10.chrX              4915848 688 + 17718866  
s cb4.chrX              10256229 692 + 21540570  
i cb4.chrX              I 128 C 0
s caeRem4.Crem_Contig0   1792022 660 -  4500979  
i caeRem4.Crem_Contig0  I 35 I 186
s caeSp111.Scaffold409    121763 680 -   201088  
i caeSp111.Scaffold409  I 35 C 0
s caePb3.Scfld02_0       3165489 664 +  4147112  
i caePb3.Scfld02_0      I 2 I 460
s caeJap4.Scaffold17934   331016 695 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=180.000000
s ce10.chrX              4916536 1 + 17718866 A
s cb4.chrX              10256921 1 + 21540570 g
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    122443 1 -   201088 A
i caeSp111.Scaffold409  C 0 I 227
s caeJap4.Scaffold17934   331711 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-2197.000000
s ce10.chrX              4916537 57 + 17718866 ------------GGATCGTAAACACCTTATATTATTCTGAATTGTTTTGGTTGTGAA----GGGATGACAAAA
s cb4.chrX              10256922 38 + 21540570 ------------aaatggtgAAC-----------------------TTGttgatgaaaattggaataacaAAA
i cb4.chrX              C 0 I 27
s caeJap4.Scaffold17934   331712 63 +   591668 ACACATCGCATAACGGCGCAAACACCTTGTCATGGAATTCATTGCAACAGTTTTGAA----TGAATG------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-293.000000
s ce10.chrX              4916594 41 + 17718866 GATAAGCACGTCAAAACTAAAATCGAAAAATGGAAAAATTT
s caeJap4.Scaffold17934   331775 18 +   591668 --TATGC---------------------AATGGGAAGAGAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e cb4.chrX              10256960 27 + 21540570 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-1354.000000
s ce10.chrX              4916635 56 + 17718866 TTAGTATGCGATAAGGGGAGGATAATGGGAATACAAATTGACAAAAAT-AAGTTCAG
s cb4.chrX              10256987 48 + 21540570 TTACAATACGATA------GGATCGTTACAGAAAAGATTTGTAAACATGAAGTT---
i cb4.chrX              I 27 C 0
s caeJap4.Scaffold17934   331793 43 +   591668 TTAAT------TAAAAGGAGTTTGATGTGggcgta-------aaaaat-aaattcag
i caeJap4.Scaffold17934 C 0 I 660
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-415.000000
s ce10.chrX              4916691 182 + 17718866 AGCATCGAAACTGCGTGTTCTAAAATTTAGG-TGAAATGTTTACGACTTGTTAAAAATTCAATGT----TCAAAAGGGTCTTAATCTATA--ATTCTGAAATTTATTTGA---TTGTGTCTATCTCAGAAACTATTAGCGTTGGGAAAAAGTT-----CAATAAATAAAA------------TTTAGCTGATTATATTGT--CTACAGGTT
s cb4.chrX              10257035 181 + 21540570 ---ATCAAAA-----TGTATCAAATCTAAAGATAAGAAGTTCAcga----taaaaaattgtatttctgATCACAA------CAGCCTACAgtatcatgaaa---aattgaacattatACAGATCCAAAAAGCC---------GAGAATAGGGTTCCTACAGTAACTTAAACGTTGTACAGTTTTTATCTGATTCGAAAGTTACTGTAGGTT
i cb4.chrX              C 0 I 117
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=0.000000
s ce10.chrX              4916873 95 + 17718866 CAGATTGTTTCAAATCTGCACCCCGCGATCTCGTTCTTAGATAAATCGGCCGACATCTTACAAGTCAGCCTTTGATTATGGTTCGTGATTTACTT
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e cb4.chrX              10257216 117 + 21540570 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-1579.000000
s ce10.chrX              4916968 313 + 17718866 GTACAGCCAAAATAACAATTATTAATGAAATTGTTTGTATAC---AAGTTCATTTTAAAACTGCCAAAAAATTGAAGTTAAACATTTAAAATAAAAACAACACTGAAAAAAAAACTCACGGCAAACGGTCTTCTTTAAAACGGAATTT---------AAAATTAAAACTTCCCTTAAAATTCAAATCTACATAAAATGTTCTGAAACATAATGCTAAGATGTCTGTTGATTAATGAAACTTATGATTTGTATAAAATAAATTGCATTATCATCAGGAAAAGAGTCATTTTTTCAGTACATGCGAACTTTATTAATTAAGAAACTA
s cb4.chrX              10257333 235 + 21540570 acacagc---gacaactactgTAACCTTAGTTGTCTATTTACTCGaatttcgtgc----gttttcagccAACTCCTATAAAGCAGTATAAACAAAATAagtcctgaaaataaaactttttaattacggtattttttgatGTGGGACCTTTGGCCACGAACACTGGCGTGTCTC-----------GTCCACA------GCTCCGATACTT----------TCTCACCAGAATAATGGAAACT--------TGAAATATAAGTT------------------------------------------------TTGAAcaggaatcca
i cb4.chrX              I 117 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122444 227 -   201088 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-2822.000000
s ce10.chrX              4917281 61 + 17718866 GAAAAAAAAACAAACTTTCCTTTTTTGTTTTTAAGTATTATACTAACGTTTAAAAGGAAGG
s cb4.chrX              10257568 24 + 21540570 -------gaa------------------------------aaaaaaactttgacaGCAGGG
i cb4.chrX              C 0 I 56
s caeSp111.Scaffold409    122671 44 -   201088 GAAGAATGAATaaac--------tttgtttttg------gaaaaaaccCTGAATAATA---
i caeSp111.Scaffold409  I 227 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=456.000000
s ce10.chrX              4917342 31 + 17718866 TTGCATT--------GGAAAAATAGAACCAGTGTCATTT
s caeSp111.Scaffold409    122715 32 -   201088 TTGCATTTCCCCCAGGGAAAAATAG-------TTCAGTC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3166153 460 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e cb4.chrX              10257592 56 + 21540570 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=-895.000000
s ce10.chrX              4917373 15 + 17718866 -TTAAAAAAGCTCAGT
s caeSp111.Scaffold409    122747  8 -   201088 CTCAAAG--------T
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3166613 10 +  4147112 -TCAAAAA-----ACC
i caePb3.Scfld02_0      I 460 C 0
e caeJap4.Scaffold17934   331836 660 +   591668 I
e cb4.chrX              10257592 56 + 21540570 I
e caeRem4.Crem_Contig0   1792682 186 -  4500979 I

a score=6211.000000
s ce10.chrX              4917388 31 + 17718866 TACAGTACTCC-----CTTTTAAGGAGACCGTGTCG
s caeRem4.Crem_Contig0   1792868 36 -  4500979 tacagtaaccctcccCTCCCAAAAGAAACACTGACA
i caeRem4.Crem_Contig0  I 186 C 0
s caeSp111.Scaffold409    122755 36 -   201088 TACAGTACTCTGACACCCTGAAAAAAGACATTGTCA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3166623 35 +  4147112 TACAGTACTCTCTTA-TCTAAAAAGAAACACTGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   331836 660 +   591668 I
e cb4.chrX              10257592 56 + 21540570 I

a score=100991.000000
s ce10.chrX              4917419 200 + 17718866 GACAAACAAACCGTAGGTGTTGCCTGAA--A--TATATATGCAAAATAACACGGA--GGCGGAGCTG------TT--GCCTTCATGTACACAAACGA--AACTCGGCCTGTAAAA-TCAGGGAGA-----------GAAGAAAAAATGGGCGAAA--AGGGCGGATTGAT-----AGCGGGTATCAAAACAAACATTTGCATTTT--GAGAGTCTC--TTTTTAAACATT-TTTTTACTT
s cb4.chrX              10257648 233 + 21540570 GACAAACAAACCGTTGGTGGTGCTTGAA--ATTTAtatatgcaaaatatcaaaggAAGGCGGAGTCGCCTTTTTTG-AGCGACATGTACACAAACGCTCAACTCGGACAGTAAAATTTGGGGAGAAAAACGCGAGCGAAGGaaaaaaaGGCGAGCGTGGGGCGGATTGATATCAAAGC-GGTATCAAAACAAACATTTGCATTTTCAAACTGTCTcttttttt--acctt-tttttacTT
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig0   1792904 201 -  4500979 GACAAACAAACCGTTGGTGTGGCTTGAA--A--TATATATGCAAAATatcaagtg--ggcggagtcgccTTTTTT--AGCGACATGTACACAAACGCCAAACTCGGACAGTAAAA-CTGGggagaaaa--------gagggaaaaaa----------tgggaggaTTGAT-----AGC-GGTATCAAAACAAACATTTGCATTTC--AACAGTCTC-tttttt--acctt-tttacattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    122791 199 -   201088 GGCAAACAAACCGACGTCGGTGCTTGAAATA--TATATATGCAAAATATCATGTA--GGCGGAGTCGCCTTTTTT--AGCGACATGTACACAAACGC--AACTCGGACAGTAAAA-TCGACGAGAGG---------GAACAAAAAT-----------GGGGCGGATTGAT-----AGC-GGTATCAAAACAAACATTTGCATTTC--AACAGTCTC--TTTTT--ACCACTCTTTCACTT
i caeSp111.Scaffold409  C 0 I 245
s caePb3.Scfld02_0       3166658 192 +  4147112 GACAAACAAACCGTTGTCGGTGCTTGAA--A--TATATATGCAAAATACCATGTA--GGCGGAGTCGCCTTTTTTGAGGCGACATGTACACAAACGA--AACTCGGACAGTAAAA-TCAGGGAGAAAAAC------GAGGGAAATA-----------TGGGCGGATTGAT-----AGC-GGtatcaaaacaaacatttgCATTTC--AACAGTCTC--TTTTT--ACCTT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   331836 660 +   591668 I

a score=-2499.000000
s ce10.chrX              4917619 72 + 17718866 TTTTGCTTT----ACAATTGCG-----GGAGGGG----GAGGTAGGGAAATAACATATTTGTTGG-------GTAGTGCATATGAG-------TCAAAA
s cb4.chrX              10257881 72 + 21540570 --------TGACAATAATTGTG-----GAAGGGG--------------ACTGATAACTTTGATTGTGATAAAGGAATGTTTATTAGTTTCAATTTAGAA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1793105 71 -  4500979 --------tGACAACAATGTTT-----GAAGGGG-TTGAAACTTGGTAACTGATAAGTATGCTTT-------GGAGTGTTCATGAG-------TCAGGA
i caeRem4.Crem_Contig0  C 0 I 175
s caePb3.Scfld02_0       3166850 63 +  4147112 TTTTACTTTGACAACAATTGTGTGGAAGAAGGGGTTTGAGACTTGATAAGTGATAAGCCAAAA------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122990 245 -   201088 I

a score=-372.000000
s ce10.chrX              4917691 23 + 17718866 ATTG--------CACGCAGGTGAA-ATAGTAA
s cb4.chrX              10257954 32 + 21540570 ATCGGATCAGACTACTTCAGCTAGTAAAGTAA
i cb4.chrX              I 1 C 0
s caePb3.Scfld02_0       3166913 23 +  4147112 GTTG--------TTCATGAGTCAA-AAAGAAA
i caePb3.Scfld02_0      C 0 I 246
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122990 245 -   201088 I
e caeRem4.Crem_Contig0   1793176 175 -  4500979 I

a score=-465.000000
s ce10.chrX              4917714 365 + 17718866 AAAT---TGAATTTTGGTGAGATTTAAATGAAAATTAAACTAACAACACACGTATTACTAATTCAA-CAACGTTTATTTGAAATGGAAATTATTTCTTAATGCGTCTTTAGCTTTTAATT-GGTATTTTCTACTTACACTGGCAATTTTGCAATTTTTGTAAAATGAGCAACGCCACATCGCAAACTATCCGT-ATAAAATGGCACAAGACCGAAATTCATAATAAAAGTGGTATTTTTTGTTGTATTTTCCAAGAAC---GTTGACTAAATTGCTTAATTC-----TTCTGGTGCATTTTGGTTAATCATAACGCGTTTTTATGTCAACtaattattttttaattttcaattatcta-atttttctaatttttatctat
s cb4.chrX              10257986 315 + 21540570 AAGTGTATTGATTTTGG---AAGCTCAATGA--------CTAAAAGTTACCGGATTTCC--TTCAATCGAAGCTCACTCGAA----------------------CCttcaacttcaagctcaatcaTTTCGATT---ACTGGGAA------AAGTATTgtaaatttgtcaac------tgatgaaatattggtgatattataataaaaaacC------CATGAT----TCgataaattttgatatctttaatagGGATCAAGCTGATTAAACT--TTAAGTCGACGGTTTTTGTGAGCTTTTATTATAGGAAAtacagtttt---tcgaaaaattcaatttcggCTTACTACTATtaacaattttccaaaatttttctag
i cb4.chrX              C 0 I 196
e caePb3.Scfld02_0       3166936 246 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122990 245 -   201088 I
e caeRem4.Crem_Contig0   1793176 175 -  4500979 I

a score=0.000000
s ce10.chrX              4918079 219 + 17718866 cattataattaatctaatttttaattaGTAAGGTATGTTTTCAATTGATATTTAATTAAACACAGGTATGCGTTGCAAATATGCTAAATTATTAATAATTCAATAAAACCTAATGTCCTAAAACACGTATAAGTTGGAGAATTTTAGCGAAATTTAGCCTTTTGTCAAATTTTCAATTATAAAAAGTGCACGAGAAGGTTTAGGAAAGTTACAGTACTA
e caePb3.Scfld02_0       3166936 246 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e cb4.chrX              10258301 196 + 21540570 I
e caeSp111.Scaffold409    122990 245 -   201088 I
e caeRem4.Crem_Contig0   1793176 175 -  4500979 I

a score=101.000000
s ce10.chrX              4918298 37 + 17718866 GTGATTTCATTCTATATACTCAAATACAAAGCAACGC
s cb4.chrX              10258497 25 + 21540570 GTGAATCGACCTTTTATTCTCA------------CAC
i cb4.chrX              I 196 C 0
e caePb3.Scfld02_0       3166936 246 +  4147112 I
e caeJap4.Scaffold17934   331836 660 +   591668 I
e caeSp111.Scaffold409    122990 245 -   201088 I
e caeRem4.Crem_Contig0   1793176 175 -  4500979 I

a score=-4630.000000
s ce10.chrX              4918335 197 + 17718866 AAGTTTTTGATCTATGTAGACAATAAGCTTGGGGATAAACTA-------------CGTCGTCTGCAA--CGTATTAAAAACACATAAATAACAAC---------------------TGGAAACTTTGCGAATCCATATATAATGTGAAAATTCAGCGTTTCG----CTTCTAATAAAGAGTATGACA---------GTTTTTCGG------------------GACAGATGCTAACATTTCTT---------------------GAAAAGTTAAA---------------CCGC-GCCCGT
s cb4.chrX              10258522 147 + 21540570 --------------TATA-------------------------------------TTACG---------------------GTATTGTtggcaacaaaa--------------------aaacaatcaaaaaag-aagacgaaacGAAACTC----ACTTTT----TT---------GGTTGTGGTCGTCGTCATGGTTT------------------------GATAATGTAGTTGTGTTTGAGTGAGTGGTGACTCTTGAT-ATAAATTTAT------------------CT-ACCTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1793351 274 -  4500979 AAGTTTTTGATCTGTGTAGACAATAAGCCAGAGGATCAGCCGAATGCGTCTCCT-TTCCGTCAACACGAAGCGTTAAATACATATAAATAACAACAAAACGTTTCCAATTTCGCAGTGgaaacgactgaaaatgtcaTAAGAACTGCGACTC----GTTCTT----TTCTCACCGTGGGTTACGGTATCATTCActgtttttcgg--------------aaaagagaaaaatactCACTTTTTTGGTGGTCGTCATGTTTGATAATGTAGTTATG---AGAATATGCTGGTGAT-TCTTGA
i caeRem4.Crem_Contig0  I 175 C 0
s caeSp111.Scaffold409    123235 229 -   201088 AAGATTTTGATCTGTGTAGACAATAAGCCATAGGATCATCTTAATGATTCGCCTATT---TCTGCAT---GCGTCAAAGACGTATAAACAACAACAAA------GCGTTTTCACATTGGAAACGACTGAAATTGCCATAAAGAATGCGACTT--------------TTCTCATTGTAGACTACGGTATTATTCTTTGTGTCTTTC--------------------CGGAAACACCCATTTATTCGAAACTTGTTG---------ATAATCTCATA----------------GAC-TCTCGG
i caeSp111.Scaffold409  I 245 C 0
s caePb3.Scfld02_0       3167182 293 +  4147112 aagtttttgatctatGGAGACAATAAGCCTTCGGATCATCTAAATGCGCCGTCTTTCCCGTCGACAC----CATCAAAGACACATAAATAACAACAAAATGTTTGCGATTTCGCAGTGAAAACGACTGAAAATGCCATAAAGAATGCGACTC----GTTCTGCTTATTCACACTATGGATTACGGTATTATTCTTGACTTTTTCCATCTAAGCTCTGGTGAGAAATGGAAGCACTCACTTTTTTGACAGTCGTCGTCATGGGTTATAATGTTGTGTTGTAGATGTTAAACTGACTTTTTGT
i caePb3.Scfld02_0      I 246 C 0
e caeJap4.Scaffold17934   331836 660 +   591668 I

a score=187760.000000
s ce10.chrX              4918532 406 + 17718866  
s cb4.chrX              10258669 411 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1793625 415 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    123464 412 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3167475 412 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   332496 409 +   591668  
i caeJap4.Scaffold17934 I 660 I 93

a score=23952.000000
s ce10.chrX              4918938 61 + 17718866 ATAC-AAA---GAGAGTATTTATATTCAAATCAATTTTT--TGTAAGTAAAGAAA----TGGAGAGATGAT
s cb4.chrX              10259080 59 + 21540570 ATAC-AAAGAGGAGAGTATTTATAttcaaatcagttttttcttaaagacgaaaaa-----------atgat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1794040 63 -  4500979 ATAC-AAA---GAGAGTATTTatattcaaatcaattttt--ttgaaaacgaagaatAGATG--GAGacgat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    123876 55 -   201088 ATAC-AAA---GAGACTATTTATAttcaaatcagttttt--ttca----ggaaaa----tg--gagacgat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3167887 55 +  4147112 ATACAAAA---GAGAGTATTTATATttaaataagttttt--ttt-----gagaaa----ta--aagaCGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   332905 93 +   591668 I

a score=132921.000000
s ce10.chrX              4918999 178 + 17718866 TT----TATTTGCACAGAGAAATGAA------GTTCAAAGTTTTGCC--AAATGTCT---CGAATAGTCAGGAAGAGGAGTTGGCGCGCCGAGGTGTTCGGAGAAAAATTGGACAGTTTTTTCCCAGACTTCAAACTGACTTTTTCCGTGAAGGCTTGTTTCACCACCATATGCTTGGAAGGTTCCTGAAAAT
s cb4.chrX              10259139 183 + 21540570 ttattcTATTtgcacagaaaaaaaga-----aattcaaagttttgcc--GAATGTCT---CAAATAGTCTGGCAGAGGGGTCGGCGCTCCGAGATGCTCCGAAAAGAAGCGGACGGTTCTCTCCCAAACTTCGAACTCGCTTCTTCCATGAAGACTTGTATCGCCGCCGTAGGTTTGGAAAAGCCCTAAAAAT
i cb4.chrX              C 0 I 499
s caeRem4.Crem_Contig0   1794103 178 -  4500979 tttttttatttgcacAGACTgagaaa--------tcaaagttttgCC--GAAAGTCT---CAAATAGTCAGACAGTGGGGTTGGCGCTCCAAGATGTTCGGAGAAAAATTTGACTGTCCGTTCCCAAACTTCgaactcactttttccatgAAGACTCGTCTCTCCACCATAAGTTTGGAACAGgcctaaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    123931 180 -   201088 ttttaatatttgcattgg--gaagaaaatcaaattcaaagtttcgCC--GAATGTCT---CAAATAGTCAGGCAGAGGGGTCGGCGCTCCAAGGTGTCTTGAGAAGAACTGAACTGTTCTCTCCCAAACATcgaattcactttttccatgGAGACTCGTTTCTCCACCGTAGGTTTGAAATGTACCT------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3167942 184 +  4147112 TTATTCTATTTGcacaggaagaagaaaatcaaattcacaGTTTTGTC--GAATGTCT---CAAATAGACAGGAAGAGGGGTTGGCGCTCCAAGgtgttcagagaaaaattgaacagttcTCTCCCAAACTTCAAATTGACTCTTCCCATGAAGGCTCGCTTCTCCACCATAAGTTTGGAAGATtcctga----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   332998 183 +   591668 --------TTTATGTAAATATAAATA--ttcaaatcaattttttgcctttaAAGTTTGGCCAAATAGTCTGGTAGAGGAGTCGGCGCCCCGAGATGTTCCGAGAAAAACTTCACAGTTCCTTCCCAGGCGTCAAATTGACTTTTTCCATGAAGACTCGCTTCTCCGCCGTACGCTTGAAATGTTCCTGAAAAA
i caeJap4.Scaffold17934 I 93 C 0

a score=-22548.000000
s ce10.chrX              4919177 110 + 17718866 TTGAATTTTAGAAAACAAAGTTAACAAAGTTTAATAAAAAAT--CAATGAAATCGGAATTTTAGATGTTGCAACAGCGGTCGACAGCGGGCCAACAAAAAAAATAATAATTT
s caeRem4.Crem_Contig0   1794281  70 -  4500979 --------tcaaaaacaaggTTAAAA----TTGACTTGGTGtcaaattaaaattgata-------------aaca-----------------AGTTAATGAACATGAAACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    124111  33 -   201088 --------------AGAATG------------------------TCATAATGTTA-----------------------------------------AAGGAGAATGGAATAT
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3168126  39 +  4147112 --------tgaaaaaaaagg------------------------aattgaaattg-----------------------------------------aaaaaatgaaaaatat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   333181  35 +   591668 ---------------------------------ATAGA------Tgtcaatattgattttttcg--------------------------------tgGAAATCTA------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10259322 499 + 21540570 I

a score=159086.000000
s ce10.chrX              4919287 590 + 17718866  
s cb4.chrX              10259821 526 + 21540570  
i cb4.chrX              I 499 C 0
s caeRem4.Crem_Contig0   1794351 498 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    124150 549 -   201088  
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3168165 515 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   333216 493 +   591668  
i caeJap4.Scaffold17934 C 0 I 518

a score=-10989.000000
s ce10.chrX              4919877 36 + 17718866 ---------TTAAATTTGTTTT----CA-----GACA-ACATTAAATCCTACCTG
s cb4.chrX              10260347 38 + 21540570 gacCATTTTTCACATATTGCTA----AT-----TGTA-ATCTC-------ACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1794849 36 -  4500979 --------ttCTGGTGTTTCTATGACAT-----TGCATATATCA------ACCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    124699 33 -   201088 ------------TATATAACTG----AA-----TACA-AAAGCAATTAACACCTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3168680 35 +  4147112 ------------CATTCggcaa----aaaaagttcca-gaaacgCTT---ACTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   333709 518 +   591668 I

a score=117165.000000
s ce10.chrX              4919913 263 + 17718866 --TTTGAACCTTGTGGTGAGAAACATAACAAGAGTTCCTCCAAACGATATACCTTGAAAGCCAATCCTGTCATTCGTATAGGGTAATGAAGTGACAAAATTGATGGCATCCTGGAAGTATAA-CGTTTTTGAAAAATACAAAATATTT-------CTTCA-ACCTCAAAATATCGTAATTCGACTTCTTGCAATTCATATGGCAAATCTTTGTATTTGAAGAATGCAAGGCATAGGACTGCAAAACCACGACTGGCAAGTGCGGCGCCCTGAAT
s cb4.chrX              10260385 263 + 21540570 --CGGAAATTTCGTAGTTAGAAACATAACAAGAGTGCCACCAAACGACACTCCTTGAAATACAATTCGGTCGCGAGTGTATGGAAGAGAAGTTATGTAGTTGATAGCATCCTAAACTTAAAA-ACTA-----ACACTTCCGTTCTTTTTTGGGAAGTTCTCACTTCAAAATACTGCAATTCCACTGTTAACAAATCTTCCGGAAGACTTTTGTACTTGAAAAATGCCAAACACAGCACCACGAATCCGCGACTATCCAACGCTGCTCTCTG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1794885 261 -  4500979 --CGGAAATTTGGTTGCTAGATACATCACAAGTGTACCCCCAAACGAAACTCCTTGAAACCCAATTCTCTCTGACGTATATGGCAGAGACGTGATGTAGTTGATAGCATCCTGAAATtagaacaata-----aaaatttattgcgTTT---GAAAACAAACACCTCAAAATACTGTAAATCCACGGACAATAAGTCATCtgtcagatttttgaatttgaaaaaagccAAACACAATACGACAAATCCTCGACTTGCAAGTGCAGCCCCCTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    124732 262 -   201088 --TGGGAATTTTGTGGAAAATAACATAACAAGCGTTCCACCAAACGAGACTCCTTGAAAACCTATTCTGTCGTTCGTGTATGGAAGAGAAGTGATGTAGTTAATTGCGTCCtgaaatacgaa-aaaa-atcatag----aaTAAATTT---TGGCGAACA-ACTTCAAAATATTGCAGATCAACTGTTAACAAATCCACAGGCAGATTTCTGAACTTGAAATATGCCAGAGCAAAAACGACAAAACCACGACTTGCAAGAGCGGCAGCCTGTTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3168715 264 +  4147112 --TGGGATCATTGTAGAGAGAAACATCACAAGAGTTCCGCCGAACGATACTCCTTGGAAACCAACGCGGTTTGATGTATAAGGCAAAGAGGTTATGAAGTTGATAGCAtcctgaaaaaagac-aata---caaagtttcaagaagttt---aAAAGTATA-ACCTCGAAATATTGTGTATCTACGTTTATCAAATCATCTGGAAgttctttgaatttgaaaaaagccaaACAGAAAACGACGAATCCTCTACTTGCTAATGCTGCACCCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   334227 270 +   591668 TCTGGGATTTTTGATGAAATATACATTACAAGAGTTGCTCCGAAGGAAACTCCCTGTATGCCAATTCTATTAGAAGTGTAAGGCAAAGATACCATGTATTTAGCAGCGTTCtgaattttgaa-caat-ttgaaaa--tcaataaaattcaGAGAAGGGCAAACTTGAAAATATAGAAGATCTGCATCAAAAAGATTAGTAGGTAAACTTTTATAGTTGAAAAATGCCAAGCAAAGAACTACGAATCCTCGGCTTGATAACGCGGCTCCCTGAAT
i caeJap4.Scaffold17934 I 518 I 137

a score=-2917.000000
s ce10.chrX              4920176 13 + 17718866 TATT----AAAAAAATA
s cb4.chrX              10260648  7 + 21540570 ----------GAAACGA
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   1795146  7 -  4500979 ----------AACATTA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold409    124994 11 -   201088 TA------ATTAAATTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3168979  9 +  4147112 CA--------TAGAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   334634 17 +   591668 tatttaaaaaaagaata
i caeJap4.Scaffold17934 I 137 I 52

a score=-8657.000000
s ce10.chrX              4920189 26 + 17718866 TTCTATCATCGGTTTAG-------TTTCGAAAT-
s caeRem4.Crem_Contig0   1795160 15 -  4500979 ----TTCGTCA--------------TTTAAAAt-
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409    125005 13 -   201088 -------ATCGA-------------TGAATAAA-
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3168988 12 +  4147112 -------GACG--------------TGAACAAT-
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   334703 34 +   591668 ttctattacagtttttgcGGTATATTACAGAAAA
i caeJap4.Scaffold17934 I 52 C 0
e cb4.chrX              10260655 21 + 21540570 I

a score=82509.000000
s ce10.chrX              4920215 231 + 17718866 --TAATAAGTTACTTTCTGTTCATTCAAGCCTCCACCGGTTCCGGAAATATCGATGATTGTTGGGAAGGGGCCATTTCCAGGTGGTTTGAACATTGTTCCGGTAACTTTAGG----CTTACCGGTGGTA-CCTTCT------------------------------------------------------------------------------------------------GGATATGCTTCTTCAACCTCTATTCTTTCCACCAGTGGATGCATAAGCCTCCTGCATAGTGATTTTTCGCCAAGCACGGTTCCATTCAAGTTTTTCACCCTA
s cb4.chrX              10260676 273 + 21540570 --TAATACCTCACTTTTTGCTCATTGAGTCCACCACCGGTGCCAGAAATGTCGATGATGGTTGGGAAAGGTCCAGTGCCAGGTGGTTTGAATATTGTTCCCGTTACTTTAGGTCTAGCTCCAGCGTCTG--CAGCAGAATAATAG--------------------------------tcaaatcaacaaaatt-----------tga----------GGATACCTGGC----GGAAAAGATTCCTCGACTTCAATTCTTTGCACCGTTGGATACATTAATCTCCTTCGGAACATTTTCTCGCATACTTTTCTTTCTCTGGGGTCCGTTACGCTA
i cb4.chrX              I 21 I 36
s caeRem4.Crem_Contig0   1795175 286 -  4500979 ----aaatctcactttttgttCATTTAGCCCACCACCAGTTCCAGAAATGTCGATAATCGTCGGGAAAGGTCCAACTCCAGGAGGTTTGAAAATAGTTCCGgtaatttttgg----gtttctacTTTGGTCCAACAAACTacttg------------------------------tttcaattttattgatttcatgACCGTTATGA----------GCATCATTGTCACTTGGATAGGTTTCTTCAATCTCAATCCGCTCAACTAATGGATGCCTCAACCTCCGTTTGAACACCTTCTTGCTAACCAGTTGTTCCTGGCTATCGGTAAcgctg
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold409    125021 276 -   201088 -----AACCTCACTTTCTGCTCATTCAATCCTCCTCCTGTTCCAGAAATATCGATGATAGTTGGAAATGGACCGTCTCCTGGAGGTTTGAAAACTGTCCCAgtaattttcgg----ttttccgGTTTCG-TCAtctaaaaagttt--------------------------------------------attttctgGTGGATATGATTCAATCAAAACCAActtgtt----gaaaatgaagtctcaatttcttttctttcaactgAAGGATGCTTCAATCTGCGACGTAAATGTTTTTGGCATACTACACGTCCTTTTGTATCAATTACCCTT
i caeSp111.Scaffold409  I 3 I 7
s caePb3.Scfld02_0       3169004 278 +  4147112 --ggaaaactcactttttgttcatttaGCCCTCCACCAGTTCCAGAAATGTCAATTATGGTTGGAAAAGGTCCAGATCCTGGAGGCTTGAATATAGTCCCACTGACTTTTGG----TTTATTGCTTGCa-ctatct-gaaattga--------------------------------------------agatttcaacagttctaattcaatttctattcACCTGAA----GGAAACAACGTCTCgacttcaattctttctacATCGGGGTGTAGTAACCTCCTTTTGAAGTATTTCTCACATACGACACGTTCCTTAGAATCACTTACactg
i caePb3.Scfld02_0      I 4 I 1
s caeJap4.Scaffold17934   334737 300 +   591668 TTATGTACCTTACCTTTTGTTCATTCAGTCCTCCACCAGATCCTGAAATGTCAATTATAGTTGGAAACGGACCACTGCCAGGtggtttgaaaattgttcCGGTAACTTTGGA----GTGTGCAGTTTTG-Ctatct-aaaattaaaaaaaaaaatcaaattttctgaattcaGGCACCGTAtcttatgtatgt------------------------acatacctGCT----GGgtaattttcttcaatttcaaTTCTCTCAACTAGCGGGTGCACCCATTTCTTGTGAAACAGCTTTTCATCAATTTTGCTGCCACTTGAATCAAAAACTCTA
i caeJap4.Scaffold17934 C 0 C 0

a score=-13355.000000
s ce10.chrX              4920446 35 + 17718866 TGTATGAACAATAAGACTATT---------------------GAAAATTCAAACTA-------------
s caeRem4.Crem_Contig0   1795483 56 -  4500979 ttttttaaacaaaaaactattttttcccACATATATCGATTTCTCACTTCAAATAA-------------
i caeRem4.Crem_Contig0  I 22 I 6
s caeSp111.Scaffold409    125304 25 -   201088 ATTTTGAACAG-------------------------------TGGCTGAATAACAA-------------
i caeSp111.Scaffold409  I 7 C 0
s caePb3.Scfld02_0       3169283 25 +  4147112 aattggaaaga-------------------------------tGTACTTTAAGCAT-------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   335037 41 +   591668 ------------AAATCAAACTTCAC----------------TGCAATATGTACAATTTCTTTTCTCGA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10260949 36 + 21540570 I

a score=125171.000000
s ce10.chrX              4920481 257 + 17718866 ACTT---------ACAACAATTGGTATTTGAAGTCAACCGGGGGTGTGCAATTACAATATCCGCCGTATCTGACAG-----TATCCGTTGGCTCGAGGCTTTCGAACAGTCCGCTTTCATTAACACCAGAATAAGTACCACGTATTGGAGCGATTTTACTCAAATCTATGCAGCCAGTTACGGTAGATTTGAAAACACCATACGAACGATATATTCCAACTTTATGAAGTAATCTTAAAA-------------------------GATCAAAGACGTGTTAAAAGAATGTTCTGGA
s cb4.chrX              10260985 267 + 21540570 ACAT---------ACATCAAGTAGTATTCAAGGTCCACGGGCGGTGTGCAATTGAAATATCCTCCAAATCTAACTCCAAGGTATCTGTAAGCTCAACACTTTCAAACAGCCCTCGGTCATTGACTCCAAAATATGTTCCACGAATTGGAGCATCTTTTCCAACAtctatttttccggaaacACTTGATTTGTAAACTCCAAACGAGCGAT--GTGCCAGCTTTGTGTATAagcctgaaaa------------------aagaaacatttgaagACTTGTGGATATAAATGAttata
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   1795545 223 -  4500979 ACTT---------ACATCAATTGATACTCAAAATCCACCGGCGGAGTGCAATTAAAATATCCTCCATATCGTACAC-----TTTCAGTTGGTTCAACACTTTCGAACAATCCTGGCTCGTTGACACCACAATATGTTCCACGTATTGGTGCATCCCTTCTCAAGTCAATTCTTCCGGATACACTTGCTTTGAAGACTCCGAATGACCGGTAAGTTCCAGTTTTATGtattaatctg-----------------------------------------------------------a
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409    125329 220 -   201088 GCTT---------ACATCAGAAGATAATTGAAATCATCAGGCGGTGTGCAGTTGCAATAACCTCCATACCGTACAT-----TATCTGTTGGTTCGAGACTCTCGAACAGTCCACGCTCATTGACACCTGCATAACTTCCACGTAATGgagcaatttttgatagGTCTATACATCCAGTGacatttgatttgaaaactccAAAAGATCGGTAAGTTCCGGTTTTGTGCAGAAACC--------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3169308 290 +  4147112 ACTTTTTTCACCCACATTAACTGATATTTATAATCAACTGGTGGTGTGCAATTACAATATCCACCATAACGAACAG-----TATCTGTTGGTTCTACACTTTCGAATAACCCCCGCTGATTGATCCCACAGTATGTTCCACGAATTGGCGCATTTGTCTCCAAATCTATACTTCCAGCAATACTTGATTTGTAAACACCAAATGAGCGGTATATTCCAACTTTGTGAATGAATCTGAAGAGATaaaaaatgggtaagtgagaaaaaattcaaaaaatatgaaaacaatcctttg-a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   335078 253 +   591668 ACTT---------ACATTAACTGATACTTAAAATCCACCGGTGGAGTACAATGACAATATCCTCCAAATCGAACAT-----TGTCCGTTGGTTCAACGCTTTCAAAAAGTCCTCGTTCATTCACACCGGCATAACTTCCGCGGATTGGCGCGTCTCTTTTTAGCACTATTGTTCCGGTGTTATTTGACCGAAACACTCCAAAAGAACGATAGGTACCCACTTTGTGTAGAAGTCtatcaa-----------------------------aataattttttaaaggaattttcTGGA
i caeJap4.Scaffold17934 C 0 I 1410

a score=-15850.000000
s ce10.chrX              4920738 26 + 17718866 AATGTTTT-----------------GATTT---------TTTCTTTGATT---------------TA----------------
s cb4.chrX              10261252 77 + 21540570 aataatttttgttcgaTATTTCACAAAGTTACGTTTCTATTTCTCTGATTAATCcagaaaaactataaaataaAGTA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1795768 46 -  4500979 aataattctTG-------TTTCCCAAGATT---------TTTCTTTGGAT---------------TTGGATGAAAAG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    125549 24 -   201088 -----------------------TAAAATT---------CTCAATTCA-----------------taga----------tttg
i caeSp111.Scaffold409  C 0 I 25
s caePb3.Scfld02_0       3169598 62 +  4147112 aaaaaattggataggAACAACTTTaaaatt---------gttagttgaaatgc------------tagaaaaaatgatttttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   335331 1410 +   591668 I

a score=-22568.000000
s ce10.chrX              4920764  46 + 17718866 -------------------TTTG----GTACGTTGAACTGATTAC-------------------GGCCAATTTAA----TAACAAAATCTTC----------------------------------------------------------------------------
s cb4.chrX              10261329 165 + 21540570 TTTAATCCTGTCCGCAAGCGTCGAAACAGACGCCTAGTGTATTGCACACTGCTATTTAACCTTGTCCTATTTCAAGctgtttctctattttcaaagCAAGATTTCAGGTGAATGAATTTA--GAAAtgtgcaataa-aaatttatttagtCTAAAACTCGGAATATTC
i cb4.chrX              C 0 I 74
s caeRem4.Crem_Contig0   1795814 129 -  4500979 TTTAA------CTGAAAAcccagaaa-aaacaacaaataaattat-------------------tctcaCGACAAAC--GTCCGCAAACACTATAGCA-------ATGTGCATGAATTGACGACAATGTGCACCAAGAAATAGATTTACGCGGG----cgtaattttc
i caeRem4.Crem_Contig0  C 0 I 35
s caePb3.Scfld02_0       3169660  50 +  4147112 -------------------attgaaa-ggaaaatgaaaagattaa-------------------GCCCCCATGAA----ATtataaaatatca---------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17934   335331 1410 +   591668 I
e caeSp111.Scaffold409    125573  25 -   201088 I

a score=17106.000000
s ce10.chrX              4920810 127 + 17718866 -------------------------AAAAGTG---------------AC------------------ACAATACATTTTAAAAACTTACCTCAGCTCCAAAAGATAATTTTTCTGGTACTCCAGGCCGTTTACAACAATTGACACATTTTCATGGACCAGCGAATCTTCGGGTGTTACTAATATA
s cb4.chrX              10261568 178 + 21540570 caaaaagtgttggTACTTATTGGAGGGAATCATGGGTGCTGGgtattttttgcgaaatttcctGGGGAAAATCAA-------TATTTACCTCAATTCCAGTTTATGAATAGTGCTGTACTCTAAATCATCCACTACAATTTCCACATCTTCATGGACCAGCGAAGCGGCAGGAGAAATTGATATA
i cb4.chrX              I 74 C 0
s caeRem4.Crem_Contig0   1795978 139 -  4500979 CAA---------------ATCGGAATAATtca---------------gtttgagaa-----------aaaatcaaag-----gaCTTACctcaactcaattttgtacaatttctgaaactccAATCCGTTAACAACGATGGAAATTCTTTCGTGAACCAATGAGTCACTAGGGATCACATTAATT
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold409    125598 123 -   201088 -------------------------aaaaaca---------------at------------------aaaataaacTT----CACTCACCTCAATTCCACTTTATAGATGTTTTGGTAGCTCAAGTTGTTAATaacaattgaaatattttcgtGAACCAAAGAATCAATTGGCGCAATTGAAATA
i caeSp111.Scaffold409  I 25 C 0
s caePb3.Scfld02_0       3169716 121 +  4147112 -------------------------aaaacca---------------tc------------------aAAGTTAGCG------ACTCACCTGAGCTCCAGTTTGTACAGCTTCCTATAATCCAAGCCATTCACAATAATTGATACATTCTCATGTACCAAAGAATCTTCTGGGCTGACAACAATA
i caePb3.Scfld02_0      I 6 I 4653
e caeJap4.Scaffold17934   335331 1410 +   591668 I

a score=-2343.000000
s ce10.chrX              4920937  97 + 17718866 ACCGGAGACATGACTATGCTAAAAACAGTGATATCAAGACA------------GGTGGGTACATTA-TATAAT---------------------GATAACGAACATACAATGAAGTTTGTAGTTTATCAAT
s cb4.chrX              10261746  81 + 21540570 TTCGCCTTCATTGTT-TGCTA--------------GGAATA--------GTGTTATGGGTGCCCTAGAGTTAC---------------------GACAAAAAGAATCAAGTGTAGT------TTTATCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796117 102 -  4500979 TCTGGCAACATGGTC-CGATGTCAACA-TGAAACTGGAATACATAGATTATTTGAAAAGAACGTGAATGCAAT---------------------GATAACATGAACCAAGTGTAGT------TTTATCAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    125721  95 -   201088 TAGGGCGACATTG----------------------GGCATA--------ACTGGGGAAATACACTAAAGAAACACACATGTGCGTACTTATATTGATAAGAATGATCAAGTGTAGT------TTTATCAAT
i caeSp111.Scaffold409  C 0 I 1036
e caePb3.Scfld02_0       3169837 4653 +  4147112 I
e caeJap4.Scaffold17934   335331 1410 +   591668 I

a score=-1787.000000
s ce10.chrX              4921034  1 + 17718866 A---------------------
s cb4.chrX              10261827 22 + 21540570 ATCAGTCTAGCCAAGGACCAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796219  1 -  4500979 A---------------------
i caeRem4.Crem_Contig0  C 0 I 130
e caePb3.Scfld02_0       3169837 4653 +  4147112 I
e caeJap4.Scaffold17934   335331 1410 +   591668 I
e caeSp111.Scaffold409    125816 1036 -   201088 I

a score=-704.000000
s ce10.chrX              4921035 144 + 17718866 AACTTAATGA-------ATGAAAAATATGCGAATAGatttttaattaatatattttttCAAATGTTTTTTCTCTAATAAATTAAA--CTTTTAAACTCTAACAAAAAGTTATATGAATAAAACTGTTTAACTTAAACATTCAAATCATTATTA
s cb4.chrX              10261849 129 + 21540570 AAATTGATAACAATCACGTGGAAAATGGGGTACTTGATCTTT--TGCAAGTTTCGCCTaaagtgagattttttgaaaaactgcaagtccttcagattttgaaaataacccgaa--aacaaaaatgtatgAACT--------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3169837 4653 +  4147112 I
e caeJap4.Scaffold17934   335331 1410 +   591668 I
e caeSp111.Scaffold409    125816 1036 -   201088 I
e caeRem4.Crem_Contig0   1796220 130 -  4500979 I

a score=-5419.000000
s ce10.chrX              4921179 272 + 17718866 AAACTTTGTCGTAA--------AATCATAGTTTGTGGGTTTATTAAGA-------ATGATTTTAT----CAAGCCGTACGTAAAAGATAA--AACCACACTCTTTGCTACACTGTAGCAAAATACATTAGAATTAACAATCACATCATTTCCTATCACGGAAAGCAATTTTTATTAAGGAAATATATAGCTTTGGAATACAGTTGAAATGTAGCAGTATGAATGAATGAAACAAGCCAGGAAGGGAACAAAAAACAACC-AAATGCAATATCCGAGGAGGTCATTCGACATGGG
s cb4.chrX              10261978 187 + 21540570 AAATTCTGAAGTAA--------GAGCT-ACACTGTTG--------------------------------GGTACAGT--GTGACAAGTGt---------------------gtgtag------------aaaaaaaaaatgaa-----------------aaagcaa-CTTTATTATTTTACCAAATCATGtcataat----caaaaaattgaaacagggtaaaaatg----aaggagaagcggg---aaaaaacaaccaaaatgcaatgtaa--aacGGTGATGAGAAGAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796350 261 -  4500979 GGAGTTTGCTGCAACTGTCAGTGATCTCATACTGTTAccatattgaaaattgttgatgaTCTCATAAGTGAAACAGGAAATGACGTATATTCTGCTACTCAGTTCGGTACAGTGTAGTA--------CAAATCAAAACATCAAACAGTTGATAATC----AAAGCAA-CTTTATTAAAGAATCAA----------Tat----taaaaaaggaagaaaattgaaaaatgggacaagataaaacggg-----gaaacaacc-aaatgcagtgaaaaTAACTATGatgtgggggggg
i caeRem4.Crem_Contig0  I 130 C 0
e caePb3.Scfld02_0       3169837 4653 +  4147112 I
e caeJap4.Scaffold17934   335331 1410 +   591668 I
e caeSp111.Scaffold409    125816 1036 -   201088 I

a score=-4456.000000
s ce10.chrX              4921451 21 + 17718866 ----------AATGGAGACAC-----------------AAAGAATTAC--
s cb4.chrX              10262165 50 + 21540570 AGCGGGACACAAAGAAGACACATTGGGGGAAAATTGAGGAGGACCAATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796611 38 -  4500979 gg------gcggtGAGGACACAATGAG------TCAAAGAAAAACCAGGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    126852 20 -   201088 ----------aatgaaaata------------------aaagaaccAG--
i caeSp111.Scaffold409  I 1036 I 3
e caePb3.Scfld02_0       3169837 4653 +  4147112 I
e caeJap4.Scaffold17934   335331 1410 +   591668 I

a score=592.000000
s ce10.chrX              4921472 66 + 17718866 AATTTTACCTAAATGTGGATTTTTTAAAGATTGGATATTTGCAAACAACAACAGAGATGATTG--------AGA
s cb4.chrX              10262215 62 + 21540570 AATTTTACCTAGAtggt---tttttaga---aaagtGT------AAAGAAATAACAACcaacatgaaaaaatga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796649 54 -  4500979 AATTTTGCCTAAATGAT---TTC---------AAgtgt------aaaacagaaaaaaacaaca--accaattga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    126875 56 -   201088 AGAATTGCCTAAATGAT-------GAAA---taagtgtttttgaaaagtaacAACAACCATTg--------taa
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3174490 53 +  4147112 AATTTTGCCTATATCTG-------GAAG---TAAGTGTTTTCGAAGAATAGCAACAACCTTTG-----------
i caePb3.Scfld02_0      I 4653 C 0
e caeJap4.Scaffold17934   335331 1410 +   591668 I

a score=-3911.000000
s ce10.chrX              4921538 108 + 17718866 CAGGAAAAAGGG---------AA-ACGTACCCAAA------TAAAGAAC-ATCGAGGAAATGACAGAAG---------------TCATAGTCA-AACACAGAG------------GAAAAAAAGCGAAAGATATGAATAGTTAAGATTTAAAA-
s cb4.chrX              10262277 135 + 21540570 ggagagaAAAAA----TCCATGA-ACGTACCCAAA-ATCGTTAGaaacg-------gaattttcaaaagttcaaaataggCATGCGGAAGCCA-AAAACAcag----aaatatgaaaagaaAAGCAACGGATATGAAATACCGAACGTGAAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796703 129 -  4500979 ggagagaagagaaactttGATGA-ACGTACCCAAA-ATCGTTACAAATG----TAAGAAACTCCAATAG-----AAAAGGCAACGTGAAGCCA-AACACAGAG------------AAAGAAAAGCAACGGATATGGAATGACGAACTTAAGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    126931 119 -   201088 agagaaaattga---------ga-acgTACCCAAAAATTGTTacaggag-a--aaagaaatcagaaaag-------gaGGCAATGTTAAGCCG-Aacacaga-------------aaagaaaagcaaaGGATATGAAATGACAAAGTTAGAAA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3174543  77 +  4147112 ---------TGA---------GACATGTAcccaaa-----ttatcaaaa-a--aaagaaat----------------agac-atttcaag------------------------------aaagcaaaagatatgaagaaaaaaa---caaac-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   336741 109 +   591668 --------------------------------------CGGTacaaagaga--aaaaaagcttCACGAA-----ACACGATAAAGTGAAGCCACAacacagagagagagagagagaaaaaaaagcatcggATATGAAGTAACGGACATTAAAAA
i caeJap4.Scaffold17934 I 1410 I 33

a score=1255.000000
s ce10.chrX              4921646 26 + 17718866 AAAAGA--AATTACTAC-------------ACAC-----AACTAAC
s cb4.chrX              10262412 46 + 21540570 GAGGTAACACGAACtgccaaaaaaagaaaaaaacgtccTAACTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796832 32 -  4500979 AGAATA--GTTAACTGTC------------AAACGTTCTAACTATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    127050 27 -   201088 A-------ACTAACTGCA------------AAACGTTCTAACTAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3174620 26 +  4147112 a-------actaATCAC-------------GAACGTTCTAACTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   336850 33 +   591668 I

a score=117029.000000
s ce10.chrX              4921672 396 + 17718866 C-GAAAATTGGAAAATGCAAGCAG-TTTTTGTATATCAT--AATATAT--GAAA---------------------------AA--TCGTGC-------TATAATGCTAAAACCT-GAGACAACTGCA-AAGTTCGAAAA---------AACGGAACATGGGGAG--GGGTCTCATA-AAACAA---TGGGTCAGTGGAAACAAGA-------TCAATATTGTTTAAATAAATGGCATGCTCCGTGTAGAT----TTTGATGAATTGGGTGAGA---ATCGG---TTAGCAGC-----GTTGGCTAGAT--TGGTTTTCTAGTTATTCTTGAGTGATTTTAGTGGGATCTAAA-------------------------TTAGTAAAACATCAGTTTATCATTATCGTTGTTGGATGAACATACATTGTCATCCATTTCATTTCCTTCCTCGACAACTCCGTTTTGCTTTTGTTTGCGTTTCTCTTCCTCCAGATCTGAAAATTTT
s cb4.chrX              10262458 434 + 21540570 CGAAAAACGTGTTAATTCAAGCAgctgtttgattttttctgatgattttcgagattaaaaaaattaaccattagataaaaaaattgaaggt------aTATGATGCTGGTACCGAGAGATGATTGTAGATGTTCGGCAATTCAAGTCTCGCGAGATGATGCTAG--AAGAATTGGGCAGAAGAAGGTGAAAAGGGGTCAAACAAAGTGAGTGAAGGCA----------AAAAACCGTTATCCGT---GATGAAGCGT--------TGTTGAGATTGTTCGA---TTAGCG-----------ACTA---TATGATCTATTGGTTATTCTTCAGTGTCTTGAGTGGGATCTAAA------------------------GTTAATAAAACAtcaatttatcattttctttatCAGATGAACATACTTGCTCATCATTCTCATCCTCCTCCTCGACGACTCCATTGTTCAATTGTTTGCGCTTTTCCTCCTCGAGATCTGGAAACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1796864 394 -  4500979 C-AAAAACGTGTAAATGCAAGCAg-tgtttgattatttttgattattt--gaga--------------caggggagaaaagaa--gacggT-------TATAATGCTAGAACCTGAGGAGAAATGCC-ATGTCCGTCAA---------AACGAAACGTGGCAAA--ACGGCTCATG-AGATGATTGGGGGTTGGGGGAAAACAGA-------AGAGCAA--------CAAAAAAGGGAATCCG------TGAGGCGTGTCG--TGTGTTGAGA---ATCGA---TTAGCG-----------GCGAAGTTATGATCTATTGGTTATTCTTGAGCGATCTCAGAGGAATCTAAA-------------------------TTAGTAAAACATCAATTTATCACTCTCATTCTCAGATGAACATACATGttcatcattctcttcttcctcttcgaCAACtccgttttgtttttgtttgcgcttttcctcttccaaatctgaaa-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    127077 397 -   201088 C-GAAAACGTGTAAATGCAAGCAGTCGTTTGATTATTTT------GTT--GAGA------------------GTGAAGAGGGA--GAAGGTAGGGGAATATGATGCTGGAACCT-GAGACAAATGCA-AAGttcgttga---------aaaagaacatgGCAAACGATGCCTCGTG-AGATGATTTT-agtcagaagaaaacaaa-------aaaacaa-----gattaaAAAGCAGAATCCGT---GAT----CGTGTCG----AGTTGAGA---ATCGG---TTAGCGGC------TTTGTTTAGT------TTATTAGTTATTCTTGAGTGTTCTCAGAGGGATCTAAA------------------------TTTAATAGAACATCAATTTGCCATTTTCATTATCTGATGAACATACGTGTTCATCAAtctcgtcttcttcctcgACTACTCcattctgtttttgtttacgtttctcctcttccaaatctgaaaatatt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3174646 381 +  4147112 C-GAAAACGTGTAAATGCAAGCAGTCGTTTGATTATTATCGATGAGTT--GAG-------------------GTGAGAGGGGA--GTATG-------GTATGATGCTGTAACCT-GAGACGGCTGCG-AAGTTCGTTGA---------TACGAATAATTGCAAA--AAGCCTCATG-AGATGaattt---------gtgaatgaa-------aaaataa-----gagcaAGAGCGTGAATCCGT---TGT----C-----------GTTGAGA---ATCGG---TTAGCG---------TGGTGGAGTTATGAATTACTGGTTATTCTTGAGCGTTTTGAGTGGGATCTAAA------------------------TTCAATAGAACatcaatttattattttcactaTCTGATGAACATACGCGCTCATcattctcttcctcctcctcgaCAACTCCGTTTTTGTTCTGCTTGcgcttctcttcttccaaatctgTAAACATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   336883 384 +   591668 c-gaaaagtcgaaaaca------------------------aTTGGAT--GGGG-------------------------------TATAGC-------TATCATGCGAGGATCCTGAGACAACTGCA-ATGTT--TTAA--------------AACATGGCAAA--ATGGCTCGTG-AGATAAAAACCAATAaggaaaacaggaa-------aaaaaaa---ttaaagaaaggCAGAAATTCAA---GAA-------------TGAGATGAGA---ATCAGAAATTGGCAGCAGCCAGCAGGCAAATTGATTGACTACTGGGGGTTCTTGAGGGATCTCAACGGGATCtggaaattgttttgtttggtttttattggtttttaaaacgaaaattt----ctatAAAAATCGCA--AACGTACATGCTCATCAACCTCATCTTCCTCTTCGACAACTCCATTTTGCTTCTGCTTGCGTTTTTCTTCCTCCAAGTCTGAAAGTTTT
i caeJap4.Scaffold17934 I 33 I 63

a score=-1815.000000
s ce10.chrX              4922068 17 + 17718866 GCATATTAAATTTTGAA----------
s cb4.chrX              10262892 27 + 21540570 AAATTGTATTTCAGATtcaattagctg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    127474 17 -   201088 caattttaaataatgAA----------
i caeSp111.Scaffold409  C 0 I 84
s caePb3.Scfld02_0       3175027 17 +  4147112 CAAGGTTAATTCATGAA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   337267 63 +   591668 I
e caeRem4.Crem_Contig0   1797258  0 -  4500979 C

a score=-10689.000000
s ce10.chrX              4922085 69 + 17718866 AAAATAA---------------GCGTCAAACTTCAACTTAAAGTTATAGGAGCTTTTTTTCTAAAGGTAATCTGTCACTTTTGG-
s cb4.chrX              10262919 83 + 21540570 aaaatgaaatcgaACTTAAGATATATCATACTTCACTTTGGAATTTTATTAGCACtttttttGAGGAGAAACGG--AATTCTTGA
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   1797258  6 -  4500979 -----------------------------------------------attagc--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3175044 31 +  4147112 ----------------------------------------------AGTCAATAATTTC------AAGAATTGG--ATTTCTAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   337267 63 +   591668 I
e caeSp111.Scaffold409    127491 84 -   201088 I

a score=-11804.000000
s ce10.chrX              4922154 236 + 17718866 GGTTATTGATTAAATATGAGTTCATAGAGAAAGTTCATTAAATTTTCAAGAAAACAAGAAAAGTTCACCGACAAACGTAAAAAACTATTTTCTGTCGCATGTTCAAACTCCTAAAATTATGGAATGTAAATATTTTGAGC---GTAATTATAACTTACAATTGGAAGCAAGAAAAGTGTTTTTTAATAGACGCCTTCAAAAAAAAAAACGAAAATTGAAAGTTTCAGATCATTTTGACT
s caeRem4.Crem_Contig0   1797264 102 -  4500979 ------tAATTAAGAA--ATgcaatgaa-----tttttgagactGTTAAGAGTACGcagaa-------------actttaaaatctTGTTTCT---------CAATACTCTCAA-----------------CTTCTCAGCGCAGTATTCACAAC-------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3175075 141 +  4147112 -----------------------ATGGA--------CTGAAACTGAT-AGAAAACGTCCTA--TTCAT---TCCACATTCCAACTCTTTTACTACGAAATGACCATACTTCTGA-----------------ATGATTAGTTCTGTATTTGTGATTAATA--TAAAATTGctacaa---ttttttaat---------------------------------------gatcaTTTTGACT
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17934   337267  63 +   591668 I
e cb4.chrX              10263002   9 + 21540570 I
e caeSp111.Scaffold409    127491  84 -   201088 I

a score=-165.000000
s ce10.chrX              4922390 59 + 17718866 TGAAATAAAAATTTTCAATATAACTTTGTAAAATTTTTCTCACGATTTTTGAACATTGG
s caeRem4.Crem_Contig0   1797366 27 -  4500979 -GAACTAAAGATTTT-------------------------------GTTTGCTTATTCG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3175216 31 +  4147112 I
e caeJap4.Scaffold17934   337267 63 +   591668 I
e cb4.chrX              10263002  9 + 21540570 I
e caeSp111.Scaffold409    127491 84 -   201088 I

a score=-6316.000000
s ce10.chrX              4922449 96 + 17718866 AGCACTATTGGAATGTTTTTATATATCCATATCATTATAACTTTGAGTTGAACTAATTGAAACAAAAACCCCATAAGTGATAGTGGCCTTTAACAT
s caeRem4.Crem_Contig0   1797393  4 -  4500979 ------------------------------GTCA--------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3175247 47 +  4147112 AGCACAATTCAAACGAACTGAGA-----ATGTCAAT---------------GCCAATTGttacaagt-----------------------------
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold17934   337267 63 +   591668 I
e cb4.chrX              10263002  9 + 21540570 I
e caeSp111.Scaffold409    127491 84 -   201088 I

a score=273.000000
s ce10.chrX              4922545 1 + 17718866 T
s caeSp111.Scaffold409    127575 1 -   201088 T
i caeSp111.Scaffold409  I 84 C 0
s caePb3.Scfld02_0       3175294 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   337267 63 +   591668 I
e cb4.chrX              10263002 9 + 21540570 I
e caeRem4.Crem_Contig0   1797397 0 -  4500979 C

a score=-13327.000000
s ce10.chrX              4922546 69 + 17718866 TTGTTATATTTACAG--AAGGATTT---CATTTGGTTTCATTT-TTAATTTTTTTCAGAAGTAGAATATA-GAGGC
s caeRem4.Crem_Contig0   1797397 51 -  4500979 --GTTATTGCCACA---AAAGGTTT---------ATTCTGGAT-ATGGTTTTCCT---------ACTATTCCAGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    127576 52 -   201088 CTGTTATAACCACAGAAGGAGTTTT---CAC---AGTTcgtat-tttgttt---------------tgtt-tagC-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3175295 46 +  4147112 ttg--------------aaagtttcataCAC---GCTTTGTATGCTTGTTTTC-----------ACTAAT-TAGC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   337330 67 +   591668 TTGTTATCTTTACAAT-Aaggtttt---cagaaaaaaacaaac-acaattttt-tcactAGACGAATGTA-CGC--
i caeJap4.Scaffold17934 I 63 C 0
e cb4.chrX              10263002  9 + 21540570 I

a score=673931.000000
s ce10.chrX              4922615 1132 + 17718866  
s cb4.chrX              10263011  987 + 21540570  
i cb4.chrX              I 9 I 210
s caeRem4.Crem_Contig0   1797448 1049 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    127628 1086 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3175341  986 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   337397 1234 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=304.000000
s ce10.chrX              4923747 2 + 17718866 TT
s caeRem4.Crem_Contig0   1798497 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    128714 1 -   201088 -T
i caeSp111.Scaffold409  C 0 I 77
e caePb3.Scfld02_0       3176327 0 +  4147112 C
e caeJap4.Scaffold17934   338631 0 +   591668 C
e cb4.chrX              10263998 210 + 21540570 I

a score=-4377.000000
s ce10.chrX              4923749 71 + 17718866 TACAGGGCAAAAAAATACCCAACGACTAACTCAAGTTATACCTATCGTCCATTTGCAAAAGT-----GAAATATAG
s caeRem4.Crem_Contig0   1798499 45 -  4500979 ----------GTGatgacttgttt----------------tttttctttttctgt---agctattgagaaaaat--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3176327 61 +  4147112 -------CGAATAAAGTTCAGGTTAGAAGCAAAAGTGAGATTTATAGCttatttg---aact-----gaaatacGG
i caePb3.Scfld02_0      C 0 I 765
e caeJap4.Scaffold17934   338631  0 +   591668 C
e cb4.chrX              10263998 210 + 21540570 I
e caeSp111.Scaffold409    128715 77 -   201088 I

a score=171.000000
s ce10.chrX              4923820 54 + 17718866 GTGATAAATCTTCTATGGTAAATCTAGACTTTCTTTGTACAGTTCAGAATATGG
s caeRem4.Crem_Contig0   1798544 41 -  4500979 ------aactcTCTGTGTT-------GTTCTTCTTtctaaaatcagaaataaat
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeJap4.Scaffold17934   338631  0 +   591668 C
e cb4.chrX              10263998 210 + 21540570 I
e caeSp111.Scaffold409    128715 77 -   201088 I

a score=-227.000000
s ce10.chrX              4923874 3 + 17718866 AGT
s caeRem4.Crem_Contig0   1798585 3 -  4500979 gTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   338631 3 +   591668 ggt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e cb4.chrX              10263998 210 + 21540570 I
e caeSp111.Scaffold409    128715 77 -   201088 I

a score=899.000000
s ce10.chrX              4923877 5 + 17718866 TTCAA
s caeRem4.Crem_Contig0   1798588 5 -  4500979 TTCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    128792 5 -   201088 ttctc
i caeSp111.Scaffold409  I 77 C 0
s caeJap4.Scaffold17934   338634 5 +   591668 tttaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e cb4.chrX              10263998 210 + 21540570 I

a score=-4875.000000
s ce10.chrX              4923882 37 + 17718866 AATTTTATTTCAATATGTACATTAAATTAGCAATTGT
s cb4.chrX              10264208 28 + 21540570 aatttcattt---------taaagAATTGGTTATTGT
i cb4.chrX              I 210 I 82
s caeRem4.Crem_Contig0   1798593 11 -  4500979 --------------------aaagaa------actgc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    128797 31 -   201088 --tttcttatt----CGGATAAATGATATGAAACTAG
i caeSp111.Scaffold409  C 0 I 1
s caeJap4.Scaffold17934   338639 25 +   591668 aatttttttt------------aaaattagaatATGT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I

a score=-6864.000000
s ce10.chrX              4923919 59 + 17718866 GTGAAAGTTGATGCGTGTAGCGGCAGTAACTGTAACTGTAACTAAGCGAGACCCACTCA
s caeRem4.Crem_Contig0   1798604 48 -  4500979 aaaaaatttaatcC------CGTCATTGAATA-----GATACTAGCCAAATTCCACACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    128829 24 -   201088 --------TTATCT------TATCCACAAATA---------------------CACAGA
i caeSp111.Scaffold409  I 1 I 5
s caeJap4.Scaffold17934   338664 28 +   591668 ------ATTAATC-------AATCCCTTAATGCAAGTGAAA------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e cb4.chrX              10264236 82 + 21540570 I

a score=-2794.000000
s ce10.chrX              4923978 24 + 17718866 GAAACACAGCGTGGAATTTTACTG-
s cb4.chrX              10264318 22 + 21540570 --GACACGTAACATGATTTTCCAa-
i cb4.chrX              I 82 I 3
s caeRem4.Crem_Contig0   1798652 22 -  4500979 --GACATATCACGTAGTTTTTAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    128858 23 -   201088 -AAAAACGCCGCGGGGTATCACTG-
i caeSp111.Scaffold409  I 5 C 0
s caeJap4.Scaffold17934   338692 11 +   591668 --------------AATTTTACGCG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I

a score=-8623.000000
s ce10.chrX              4924002 78 + 17718866 -GTAAGTCAAATTCCTACAAACTTACT-------GAAAATTTAAAATTTACAAACATTTGCACCTGAACT-------TATGACATTTAGAACA
s cb4.chrX              10264343 92 + 21540570 -aaaatttaaaatcgtAAAAACTTCGTTTACTAGACAACCCTAGAATATCTGTTCTGAATCCCCTGTATCATTAAATTATATCTTCACAAGCG
i cb4.chrX              I 3 I 10
s caeRem4.Crem_Contig0   1798674 42 -  4500979 ----------------------------------ACAAGCTTATCATCTA----------CACCTCTATC-------TAGATCATTAAGAACA
i caeRem4.Crem_Contig0  C 0 I 56
s caeJap4.Scaffold17934   338703 34 +   591668 ATAGGATCAAATTCCTA-------------------------------------------CACTTTGATT-------TGAAACA---------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeSp111.Scaffold409    128881  0 -   201088 C

a score=635.000000
s ce10.chrX              4924080 21 + 17718866 AGCTTATCAATCGTGCGCAAA
s cb4.chrX              10264445 21 + 21540570 CGATTATCAGTTCTTTGTGGG
i cb4.chrX              I 10 C 0
s caeJap4.Scaffold17934   338737 21 +   591668 AGCTTATCACACGAACAAAAA
i caeJap4.Scaffold17934 C 0 I 58
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeSp111.Scaffold409    128881  0 -   201088 C
e caeRem4.Crem_Contig0   1798716 56 -  4500979 I

a score=-812.000000
s ce10.chrX              4924101 19 + 17718866 A------------------------TCCAAAATCACCACTTGA
s cb4.chrX              10264466 43 + 21540570 AAATTGATATGATATCAGCTTATCTTCTCATATCCTCttctaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeJap4.Scaffold17934   338758 58 +   591668 I
e caeSp111.Scaffold409    128881  0 -   201088 C
e caeRem4.Crem_Contig0   1798716 56 -  4500979 I

a score=-1437.000000
s ce10.chrX              4924120 22 + 17718866 ---TCTACATCTATGT------ATTAAAAAT
s cb4.chrX              10264509 31 + 21540570 tttcctttttccttttgCCTATGCTATCAAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    128881 13 -   201088 ---TCTATTCCTCTCT---------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeJap4.Scaffold17934   338758 58 +   591668 I
e caeRem4.Crem_Contig0   1798716 56 -  4500979 I

a score=-1040.000000
s ce10.chrX              4924142 19 + 17718866 TATCATTATATGAAAAAAT
s cb4.chrX              10264540  6 + 21540570 -------------TATCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1798772  6 -  4500979 -------------TATCAT
i caeRem4.Crem_Contig0  I 56 C 0
s caeSp111.Scaffold409    128894 17 -   201088 --CCGTTCTATGACATCAC
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I
e caeJap4.Scaffold17934   338758 58 +   591668 I

a score=-274.000000
s ce10.chrX              4924161 3 + 17718866 AAT-
s cb4.chrX              10264546 3 + 21540570 AAC-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1798778 3 -  4500979 GAC-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409    128911 3 -   201088 AAC-
i caeSp111.Scaffold409  C 0 I 1
s caeJap4.Scaffold17934   338816 3 +   591668 -ACT
i caeJap4.Scaffold17934 I 58 C 0
e caePb3.Scfld02_0       3176388 765 +  4147112 I

a score=240722.000000
s ce10.chrX              4924164 274 + 17718866 TACCCGTCATCCACAAAAGGTTCAATCATTTCTTCTTCGTCCTCTGCAATTCCCGGTCCTCCTAGACGGCTTCCAGTACGACTCAGGTTCAATTGAGACACCGCTTGTCCGACAACAGATCTTGGAATTGAAAGTGTGGATGCACGATATCCAGCCATGGTTCCTTCCTCT---TTGAATTCCTTCAAATTTTGAATAGATCCACCATAGAAAATATCTTGACGGTTCATTGGACGTTGGAATTCTTTCGGATCAACACCCTGAAAATATAATTATT
s cb4.chrX              10264550 259 + 21540570 TACCCGTCATCCACGAATGGTTCAATCATTTCGTCTTCCTCTTCTGGCACAGCTTGTCCTCCAATACGACTTCCGGCACGGCTCAAATTCATTTGAGAAGCAGCTTGTCCAACAACAGATTTTGGAATGGAGAGAGTCGACGAGCGATAGTTAGCCATGTTTCCTCCCTCTTGCTTGAATTCCTTCAAATTGCTGATTGATCCTCCGTAGAAGATATCCTGTCTGTTCAATGGACGAGCAAACTCATTTGGGTCGACTC------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1798782 272 -  4500979 CACCCATCATCCACAAACGGTTCAATCATTTCTTCCTCGTCTTCAG---CTACTGGTCCTCCAATACGACTTCCTGCACGGCTCAAGTTCATCTGAGAAGCAGCTTGTCCGACAACAGATTTTGGGATGGAAAGAGTAGAGGCGCGGTAGTTGGTCATGTTTCCTCCCTCTTGCTTGAATTCCTTCAAGTTGCTGATGGATCCTCCGTAGAAGATATCCTGACGATTCAAAGGACGAGAGAACTCATTTGGATCCACTCcctggaaaaatatttg--
i caeRem4.Crem_Contig0  I 1 I 29
s caeSp111.Scaffold409    128915 277 -   201088 TACCCATCATCCACAAATGGTTCGatcatctcttcttcatcttctgcAATTGCAGGCCCTCCGACACGACTTCCAGCACGACTCAAGTTCATTTGAGAAGCGGCTTGTCCGACAACAGATCTTGGAATAGAAAGAGTTGACGAACGGTAGTTGGTCATGTTTCCACCTTCTTGCTTGTATTCCTTCAAGTTAGTGATAGATCCTCCATAGAAAATATCTTGACGATTCAATGGACGAGCGAATTCATTTGGATCGACACCCTGAAAACGTATTTTTC
i caeSp111.Scaffold409  I 1 I 23
s caePb3.Scfld02_0       3177153 277 +  4147112 TACCCGTCATCCACAAATGGTTCGAtcatctcctcttcttcctcagCAATAGCTGGTCCTCCAACACGACTTCCTGCACGGCTCAAGTTCATTTGTGAAGCCGCTTGTCCAACAACAGATCTTGGGATTGACAGGGTAGAGGCACGGTAATTGGCCATGTTTCCTCCTTCTTGTTTGAATTCCTTCAAGTTGGTGATGGATCCTCCGTAGAAAATATCTTGACGATTAATTGGACGAGAGAACTCATTTGGATCAACTCCCTGTAAACATTCTCATT
i caePb3.Scfld02_0      I 765 I 24
s caeJap4.Scaffold17934   338819 260 +   591668 CACCCGTCATCAACAAAAGGTTCGATCATCTCTTCCTCGTCTTCAACTACTCCAGGCCCACCCAGACGGCTTCCAGCACGGCTGAGATTCATTTGCGAAGCAGCTTGTCCGACAATAGACTTTGGGATAGAAAGGGTAGATGCACGGAAGTTGGACATGTTTCCTCCTTCTTGCTTGAATTCTTTCAAGTTACTGATAGAACCACCGTAGAAGATATCTTGGCGATTGAGTGGACGAGAGAACTCTTGTGGGTCGACACC-----------------
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              4924438 25 + 17718866 TATAGTGGGCACAGTTCTCATTGTT
e caePb3.Scfld02_0       3177430 24 +  4147112 I
e caeJap4.Scaffold17934   339079  0 +   591668 C
e cb4.chrX              10264809  0 + 21540570 C
e caeSp111.Scaffold409    129192 23 -   201088 I
e caeRem4.Crem_Contig0   1799054 29 -  4500979 I

a score=193133.000000
s ce10.chrX              4924463 615 + 17718866  
s cb4.chrX              10264809 408 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1799083 395 -  4500979  
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold409    129215 404 -   201088  
i caeSp111.Scaffold409  I 23 C 0
s caePb3.Scfld02_0       3177454 418 +  4147112  
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17934   339079 420 +   591668  
i caeJap4.Scaffold17934 C 0 I 14

a score=-10000.000000
s ce10.chrX              4925078 81 + 17718866 CCTTTTTTGAGTAAATTTTAAAAAAAAACTCTATTTGAAGATCTTATTATAGGTTTTCTTGCGTTCTCTATTCTCTAACTA
s cb4.chrX              10265217 21 + 21540570 ------------------------------------------------------------gCGTTCGtaatatttttaata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1799478 26 -  4500979 -------------AATTT------------------------------------------GCGTTCGTAATAATTTTAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    129619 29 -   201088 -------------aattt---------------------------------gTGTTCGTAATATCTTTTATGACT------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3177872 28 +  4147112 -------------AATTT---------------------------------GCGTTCGTAATAT-TTTTATGATC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   339499 14 +   591668 I

a score=636266.000000
s ce10.chrX              4925159 962 + 17718866  
s cb4.chrX              10265238 843 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1799504 896 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 44
s caeSp111.Scaffold409    129648 892 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3177900 890 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   339513 905 +   591668  
i caeJap4.Scaffold17934 I 14 C 0

a score=910.000000
s ce10.chrX              4926121 1 + 17718866 A
s cb4.chrX              10266081 1 + 21540570 a
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold409    130540 1 -   201088 a
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178790 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   340418 1 +   591668 a
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=-1963.000000
s ce10.chrX              4926122 9 + 17718866 TCATAATTT
s caeSp111.Scaffold409    130541 2 -   201088 tt-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178791 9 +  4147112 taaaagttt
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   340419 6 +   591668 -tataaT--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10266082 12 + 21540570 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=1535.000000
s ce10.chrX              4926131 12 + 17718866 CAATACTCTTTA
s caeSp111.Scaffold409    130543 12 -   201088 caatcttttcta
i caeSp111.Scaffold409  C 0 I 2
s caeJap4.Scaffold17934   340425 11 +   591668 -AATTTTCTTCA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3178800 13 +  4147112 I
e cb4.chrX              10266082 12 + 21540570 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=586.000000
s ce10.chrX              4926143 9 + 17718866 ATTTCTAAA
s caeJap4.Scaffold17934   340436 7 +   591668 --TTCTAAA
i caeJap4.Scaffold17934 C 0 I 22
e caePb3.Scfld02_0       3178800 13 +  4147112 I
e cb4.chrX              10266082 12 + 21540570 I
e caeSp111.Scaffold409    130555 2 -   201088 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=0.000000
s ce10.chrX              4926152 606 + 17718866  
e caePb3.Scfld02_0       3178800  13 +  4147112 I
e caeJap4.Scaffold17934   340443  22 +   591668 I
e cb4.chrX              10266082  12 + 21540570 I
e caeSp111.Scaffold409    130555   2 -   201088 I
e caeRem4.Crem_Contig0   1800400  44 -  4500979 I

a score=483.000000
s ce10.chrX              4926758 9 + 17718866 AATTAAAAT
s caePb3.Scfld02_0       3178813 9 +  4147112 aattgaaaa
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   340443 22 +   591668 I
e cb4.chrX              10266082 12 + 21540570 I
e caeSp111.Scaffold409    130555 2 -   201088 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=457.000000
s ce10.chrX              4926767  5 + 17718866 --------AAAAT
s caeSp111.Scaffold409    130557  5 -   201088 --------aaaaa
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3178822 13 +  4147112 aagtttttaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   340443 22 +   591668 I
e cb4.chrX              10266082 12 + 21540570 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=-654.000000
s ce10.chrX              4926772 13 + 17718866 -TTGAAAGTCAGAA
s cb4.chrX              10266094 13 + 21540570 -TTAAAATTCGTTA
i cb4.chrX              I 12 C 0
s caeSp111.Scaffold409    130562 12 -   201088 acgaaaa--gaaga
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178835 14 +  4147112 ccTAAAATCTCAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   340443 22 +   591668 I
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=-7166.000000
s ce10.chrX              4926785 9 + 17718866 -AACTGT---CAA--
s cb4.chrX              10266107 9 + 21540570 -AATCGATTT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    130574 5 -   201088 -aacg-a--------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178849 6 +  4147112 -AATATT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   340465 9 +   591668 AAATGTC------TC
i caeJap4.Scaffold17934 I 22 C 0
e caeRem4.Crem_Contig0   1800400 44 -  4500979 I

a score=97932.000000
s ce10.chrX              4926794 135 + 17718866 ACCTTGCTGAACACCCATGTTGATTGAATACTGTGACGAGTAGTTGGTGAGCTGTCCGTCGTT---GAGCGAACCAATATCCTGA---TCGTCTTCTTCGAAGTTGGACTCTCCTAA--ACGTGACAGAGATTAGCAAACAAT
s cb4.chrX              10266116 125 + 21540570 ACCTTGTTGTGCACCCATGTTGATTGAATACTGAGAAGAGTAGTTCGTGAGCTGTCCGTCGTT---CAGCGAACCAATATCCTGA---TCCTCTTCTTCAAATGGTGGTTCTCCTAG--AAGT----------AGTAAAAGAT
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   1800444 139 -  4500979 ACCTTGTTGCGCACCCatgttgattgaaaactgagaagagAAAGTGGTGAGAGGCTCGTCGTTTAACAGAGAACCGTTGTCttggtcttcttcttcttcaaatggTGGTTCTCCTGA--AAGTGAC--CGATGAGTGAAACAT
i caeRem4.Crem_Contig0  I 44 C 0
s caeSp111.Scaffold409    130579 132 -   201088 acCTTGCTGTGCACCCATGTTGATTGAGAACTGAGACGAGTAGTTAGTTAGCTGGCCCTCGTT---AAGCGAACCGTTGTcttga---tcttcttctccaaagtttgattcttctgaatatgtGAC--CGATAAGCGAAC---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178855 133 +  4147112 ACCTTGTTGCGCACCCATGTTGATTGAGAACTGAGATGAATAGTTGGTAAGTTGTCCGTCGTT---TAACGAACCGTTGTCTTGA---TCCTCCTCTTCGAAGTTTGACTCACCTAA--ACGTGAA--AGATGAATCAACAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   340474 133 +   591668 ACCTTGTTGCGCACCCATGTTAATTGAGAACTGTGACGAGTAGTTTGTGAGCTGGCCGTCGTT---CAAAGATGCGTTGTCTTGT---TCGTCGTCTTCGAAGTGGGACTCACCTAA--AATTGGC--CGATAAGCGAACAAT
i caeJap4.Scaffold17934 C 0 C 0

a score=344.000000
s ce10.chrX              4926929 29 + 17718866 GAATTCACGCATCTGATGCTA--GGACGCTT
s caeRem4.Crem_Contig0   1800583 26 -  4500979 AAATTCTCGCCTT---TCTTA--GTACGCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    130711 23 -   201088 AAATTC---TACT---CTTTT--AGACGATT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3178988 26 +  4147112 AAATTCACATTTT---GTTTA--GGACACTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   340607 27 +   591668 -GACTTACACTAT---TCGAGGCGGACACTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10266241 33 + 21540570 I

a score=60703.000000
s ce10.chrX              4926958 482 + 17718866  
s cb4.chrX              10266274 515 + 21540570  
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   1800609 555 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 73
s caeSp111.Scaffold409    130734 567 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3179014 563 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   340634 445 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-4886.000000
s ce10.chrX              4927440 21 + 17718866 ATCTATTGG----TAAAAAAGAGAG-
s cb4.chrX              10266789 20 + 21540570 ----Actagaat-tcaaaaagctag-
i cb4.chrX              C 0 I 48
s caeSp111.Scaffold409    131301 12 -   201088 -------------TAGCGAAACTTG-
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3179577 21 +  4147112 ----acaaaaatggagagaaactAG-
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17934   341079 17 +   591668 ---------aaaggaaaaaaaatgaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1801164 73 -  4500979 I

a score=-7457.000000
s ce10.chrX              4927461 43 + 17718866 TATT---TTGGATT---GTTGTGTTG------------------AGCATT--GGGAATGTGTAATGGGA
s caeSp111.Scaffold409    131318 42 -   201088 TATCAGTATAGACTACATTTGTTGAG------------------AGTAGGAAGGGAA---------GAG
i caeSp111.Scaffold409  I 5 I 1
s caePb3.Scfld02_0       3179613 49 +  4147112 TGTTA--ACAGACTACAGATGAGAAA------------------AGAAGTAGGGGAAACTAGAGCCAGG
i caePb3.Scfld02_0      I 15 I 1
s caeJap4.Scaffold17934   341096 63 +   591668 ------aaagaagaacaaaTGCCTAACTactcattttttttactggaaagcgagaaaaatgaaaagaga
i caeJap4.Scaffold17934 C 0 I 19
e cb4.chrX              10266809 48 + 21540570 I
e caeRem4.Crem_Contig0   1801164 73 -  4500979 I

a score=100.000000
s ce10.chrX              4927504 1 + 17718866 C
s caeJap4.Scaffold17934   341178 1 +   591668 c
i caeJap4.Scaffold17934 I 19 C 0
e caePb3.Scfld02_0       3179662 1 +  4147112 I
e cb4.chrX              10266809 48 + 21540570 I
e caeSp111.Scaffold409    131360 1 -   201088 I
e caeRem4.Crem_Contig0   1801164 73 -  4500979 I

a score=115375.000000
s ce10.chrX              4927505 625 + 17718866  
s cb4.chrX              10266857 611 + 21540570  
i cb4.chrX              I 48 I 426
s caeRem4.Crem_Contig0   1801237 602 -  4500979  
i caeRem4.Crem_Contig0  I 73 I 5
s caeSp111.Scaffold409    131361 603 -   201088  
i caeSp111.Scaffold409  I 1 I 7
s caePb3.Scfld02_0       3179663 633 +  4147112  
i caePb3.Scfld02_0      I 1 I 9
s caeJap4.Scaffold17934   341179 565 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-11443.000000
s ce10.chrX              4928130 50 + 17718866 AATGCTGAA----CAACGAAATG-AAGTATATAAC----------ATA--AATAGGGATGATA----CTCT
s caeRem4.Crem_Contig0   1801844 60 -  4500979 GAGGCTAaa----caggaaattg-aaaaaaaacataatgcAAGAGCTG--AATAGAAATGAGATTAT----
i caeRem4.Crem_Contig0  I 5 I 33
s caeSp111.Scaffold409    131971 51 -   201088 aaagttgcAAATCTAATGGATTATGAACtgataat----------ttt--attttcaaggaCG--------
i caeSp111.Scaffold409  I 7 C 0
s caePb3.Scfld02_0       3180305 48 +  4147112 aaagttGCG----TATGGGATTA-AAAccaattgt----------ttgaaaatttgtatgaAT--------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   341744 46 +   591668 -------aa----taagaaaaaa-aaacgaatttttacTGAAACACTG--ATAAAAAATG-----------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10267468 426 + 21540570 I

a score=22725.000000
s ce10.chrX              4928180 164 + 17718866 C------TGATAATAAAATTAAATACGCTTTGTTGTACAGCCATCAAAATTTTCCGACTTCTT--------TGTGAAAGACAGG-----------AGGAGCAGGAGCAAGCTTATCATTAGTGTTTCATCGAGCACA-TACTATCAT------TCCACAATTAGGAGTCTAATTTGACAGCCG--AGAACAAAAAAGA
s cb4.chrX              10267894 167 + 21540570 CTGATAGCGCTAATACCA--AATATGCTATTGTCGTGCAgctatcaa---tt-----tttcaa----gtcaCGTAATGGACAGT-----------AGAAGCGAGGGCGAGCTTATCACTACTATTTTATTA---GCT-CATTATCATAAATGTTGCATTTTTGTCAGTCTAATTGGGCTGacg--agaacaaaaaaaa
i cb4.chrX              I 426 C 0
s caeRem4.Crem_Contig0   1801937 172 -  4500979 ------atgataatgaaa--aattttgtattgTCGTACACCcatcaa---ttttaaatttctt----gtCACGTAATGGACAGTA---TGGAAGCAGGAGCGAGGGCGATCTTATCACTATTCTCTCATCAAGCACT-TACTATCAAA-----TTCATAATCGAGAACTTAATGAGTGTGttg--caaacaaaaaaga
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold409    132022 150 -   201088 -------TGATAATGAGA--GAAA-------GTCGTACAGCCATCAA---TTTGGGG---CTT----GTTACGTGAAAGACAATG-ATAGGAAGCCCGAGTAGTA-----CTTATCAACTG--TTTCATCGAGCATTCTACTATCATA------------TTAAACGAAAAATGGGGTGTTTG--GGAGCAAAAAAGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3180353 156 +  4147112 -------TGATAATGAAA-CAAAA-------GTCGTACAGCTATCAA---TTTACGACGTCTT----GTCACGTAAAAGGCA------TAGAAGCGGGAGCAAAAACTAGCTTATCACCAGAATTTCATCGAGCACT-TATTATCAT-------------TAAACTGGAGAATTTTGGGTTGGgaggaacaaaaaaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   341790 161 +   591668 ------CTGCCAATTAGA-----------------TATCACTAtcaa---tttaaatttccaaTTCAATCACGTAAAAGAAAGGACAGAATCAGCAGCAGCGGGAGCAAGCTTATCATCCG--ATTCATTGAGCACT-TACTGCCAA------TTTGAGAACTGACGATTAAGAGTATTAGCG--AGaacaaaaagaa
i caeJap4.Scaffold17934 C 0 I 842

a score=950.000000
s ce10.chrX              4928344 15 + 17718866 ACTATCAAGTGGTCA
s cb4.chrX              10268061  2 + 21540570 -------------ca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802109 15 -  4500979 actaTCAGTCAATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132172 15 -   201088 GCTATCAGATGACTA
i caeSp111.Scaffold409  C 0 I 33
s caePb3.Scfld02_0       3180509 11 +  4147112 gcTA----GTGGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I

a score=-1175.000000
s ce10.chrX              4928359 28 + 17718866 GGTGTTGAATTGGCAGGTCAAAAATGTT---
s cb4.chrX              10268063 28 + 21540570 ggtgtttGCTCGATtcacaacaattttt---
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   1802124 19 -  4500979 GATGTTGG---------TAACAAATGgc---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3180520 26 +  4147112 GATGTCtatttg-----caacatttttcgGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I
e caeSp111.Scaffold409    132187 33 -   201088 I

a score=-867.000000
s ce10.chrX              4928387 11 + 17718866 GAAAGTGTAAT---
s caeRem4.Crem_Contig0   1802143 14 -  4500979 aaaatttcagtgaa
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3180546 11 +  4147112 -GAAATTGGATG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268091 20 + 21540570 I
e caeSp111.Scaffold409    132187 33 -   201088 I

a score=-2449.000000
s ce10.chrX              4928398  9 + 17718866 AATCTA---GCA----
s cb4.chrX              10268111 16 + 21540570 AATCGGGGAGACAGAA
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   1802161 13 -  4500979 aaTCAG---AATTGAA
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       3180557  9 +  4147112 ----AG---GTGAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I
e caeSp111.Scaffold409    132187 33 -   201088 I

a score=-521.000000
s ce10.chrX              4928407 43 + 17718866 -GAAA-GTTCTCCACA------C-----ATAAG-GACAATTCCTGAAGTACGGAGGG
s cb4.chrX              10268127 53 + 21540570 GAAAACTTTCTCCAGAAATGTTT----GATAAGAATTAGTTTGTGTAGAAGAAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802174 47 -  4500979 ggaaa-tttttccagaaa----t----gatAAGACACTGTCC-TGGAGGGGAAAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132220 49 -   201088 GACAG-TTCTCACCGC------CCCGAGATAAG-AATAGTTCCAGAAGCGAAGGGTA
i caeSp111.Scaffold409  I 33 I 34
s caePb3.Scfld02_0       3180566 45 +  4147112 -ATAA-TTTCAACAAA------T----GATAAGCGAAAGTTCCTGGAAGAAAGGAGG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   341951 842 +   591668 I

a score=300.000000
s ce10.chrX              4928450 1 + 17718866 G
s caeRem4.Crem_Contig0   1802221 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3180612 1 +  4147112 G
i caePb3.Scfld02_0      I 1 I 30
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268180 0 + 21540570 C
e caeSp111.Scaffold409    132269 34 -   201088 I

a score=-23.000000
s ce10.chrX              4928451 2 + 17718866 TC
s caeRem4.Crem_Contig0   1802222 2 -  4500979 ta
i caeRem4.Crem_Contig0  C 0 I 31
e caePb3.Scfld02_0       3180613 30 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268180 0 + 21540570 C
e caeSp111.Scaffold409    132269 34 -   201088 I

a score=69.000000
s ce10.chrX              4928453 24 + 17718866 TCTGGTCAAAGTTTTTGTTTCCAA
s cb4.chrX              10268180 14 + 21540570 ---GGGTAAAGTTTG-------AA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3180613 30 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e caeSp111.Scaffold409    132269 34 -   201088 I
e caeRem4.Crem_Contig0   1802224 31 -  4500979 I

a score=-241.000000
s ce10.chrX              4928477 3 + 17718866 ---CTC
s cb4.chrX              10268194 6 + 21540570 TGGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802255 3 -  4500979 ---CCT
i caeRem4.Crem_Contig0  I 31 C 0
e caePb3.Scfld02_0       3180613 30 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e caeSp111.Scaffold409    132269 34 -   201088 I

a score=180.000000
s ce10.chrX              4928480 1 + 17718866 A
s cb4.chrX              10268200 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802258 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3180643 1 +  4147112 A
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I
e caeSp111.Scaffold409    132269 34 -   201088 I

a score=9136.000000
s ce10.chrX              4928481 26 + 17718866 CTGCCCTTTGTGGTATTTCG------------AATCAT
s cb4.chrX              10268201 38 + 21540570 CAGCACGTGGTGTCACTTCTGTCCCATGTATGGATTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802259 26 -  4500979 CTGCTCTTCTTGATACTTTT------------AATCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132303 26 -   201088 CTGCCCTTTGTGGTATTTCT------------AATGAT
i caeSp111.Scaffold409  I 34 I 6
s caePb3.Scfld02_0       3180644 26 +  4147112 CTGCCCTTTGTGGTATTTTT------------AATCAC
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold17934   341951 842 +   591668 I

a score=-7012.000000
s ce10.chrX              4928507 29 + 17718866 --------GACAATGTGGAATCTTCTAATTTTAGA---GT---
s cb4.chrX              10268239 37 + 21540570 CATCATTTCAAAA---ggaa--tcgaaaaagaaaatgtgggT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1802285 39 -  4500979 tttcttttctaaatttgaaacttcCAAAGAGAGGA---GGGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132335 20 -   201088 ------------------GA--TAATGATAGAAGA---AGACT
i caeSp111.Scaffold409  I 6 C 0
e caePb3.Scfld02_0       3180670 27 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I

a score=35589.000000
s ce10.chrX              4928536 83 + 17718866 ATTCTTTCACCT-CAATCGTCTTATT--CACACTAAATTTTGTGATAAGCCGGGATTATTCACGAAATCAAGTGTTTCAGTGCAAA
s cb4.chrX              10268276 84 + 21540570 ATTCTTACACTTACAATCGTCTTATT--GTCACCAAAACCTGTGATTATAGGGAATTATTCACGAAATCGAGTGTTTCAGGACAAA
i cb4.chrX              C 0 I 367
s caeRem4.Crem_Contig0   1802324 82 -  4500979 -TTTTCACACTCCAAAGAGtcttatt--ttcatgaaaatctgTGATAAC-GAGGattattcgaaaaactaaaagtttcagttaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132355 84 -   201088 ATTCTCGCACTCTCAATCGTCTTattcactcaa--aaatctGTTATAATAGGGGATTATTCacgaattgaaatatttcagtaCAAG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3180697 83 +  4147112 ATTCTTACACCTCCAATCGTCttaat--ttcaac-aaaactgtGATAATATGGGATTATTCACgaaatcaaatatttcagttcaaa
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold17934   341951 842 +   591668 I

a score=1210.000000
s ce10.chrX              4928619 10 + 17718866 CTTC--ACCGAC
s caeRem4.Crem_Contig0   1802406 10 -  4500979 tttt--GCTGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132439 12 -   201088 ACTGGCGCTGAC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3180780 10 +  4147112 ttta--gctgac
i caePb3.Scfld02_0      C 0 I 460
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268360 367 + 21540570 I

a score=-2179.000000
s ce10.chrX              4928629 76 + 17718866 ACCAAGAGTTGATAGCGTGATGTGC---TGCAG---------ATAATTCCGCAACGAATGCGAAAATTGGAATAGATCGAAAGATGGA-
s caeRem4.Crem_Contig0   1802416 74 -  4500979 ------AATGTGTGG----AAGTGC--TTGAAGAATAGTGTGATTGTTaaaaaggtaacaaagaaa---aaagaaatcaaaagattgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    132451 70 -   201088 ------AATTCAAGA--TTAGGTGCAGTTAAGG---TGTTTCAGTACTTCCAAGGGAATTCaggaa-------gaatcaaaagattga-
i caeSp111.Scaffold409  C 0 I 87
e caePb3.Scfld02_0       3180790 460 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268360 367 + 21540570 I

a score=689.000000
s ce10.chrX              4928705 16 + 17718866 ACGAAGATTTTGAGTT
s caeRem4.Crem_Contig0   1802490 16 -  4500979 aaaaatattttgaact
i caeRem4.Crem_Contig0  C 0 I 2675
e caePb3.Scfld02_0       3180790 460 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268360 367 + 21540570 I
e caeSp111.Scaffold409    132521 87 -   201088 I

a score=0.000000
s ce10.chrX              4928721 913 + 17718866  
e caePb3.Scfld02_0       3180790 460 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268360 367 + 21540570 I
e caeSp111.Scaffold409    132521  87 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=68.000000
s ce10.chrX              4929634 3 + 17718866 AAT
s caeSp111.Scaffold409    132608 3 -   201088 aag
i caeSp111.Scaffold409  I 87 C 0
e caePb3.Scfld02_0       3180790 460 +  4147112 I
e caeJap4.Scaffold17934   341951 842 +   591668 I
e cb4.chrX              10268360 367 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=546.000000
s ce10.chrX              4929637 1 + 17718866 A
s caeSp111.Scaffold409    132611 1 -   201088 a
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3181250 1 +  4147112 A
i caePb3.Scfld02_0      I 460 C 0
s caeJap4.Scaffold17934   342793 1 +   591668 A
i caeJap4.Scaffold17934 I 842 C 0
e cb4.chrX              10268360 367 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=37069.000000
s ce10.chrX              4929638 95 + 17718866 ACTTACCATTTCTTTCAGATTTTAATGATTTCGTTGGTGATGTCGGTTGACTGCTCCTGTTGGGATCCGGCCCGTCTGTCATGGC-TATCTGAAAA
s cb4.chrX              10268727 95 + 21540570 atttaccattttttgctgatttttccgattttgtcgGCGACGTCGGTTGGTTCTCCTTTATAGTGTCGAGGCCGTCCGGCATGGT-TGCCTGAAAA
i cb4.chrX              I 367 I 939
s caeSp111.Scaffold409    132612 96 -   201088 actaaCCATTTTTCGAAGACTTCAGAGATTTGGTGGGCGAGGTCGGTTGACTCTTTCTGTTTGGGTCGATACCGTCCGGCATTTTATACCTGTAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3181251 96 +  4147112 ACTTACCATGTTTCGCAGACTTCTCCGACTTCACTGGAGACGTAGGTTGACTTTTCTTGTTCGGATCGCTTGCGTCCGGCATgttttacctgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   342794 95 +   591668 ACTCACCATTCTTTCCTGATTTTGAAGACTTTGCGGGTGACGTCTGCTCATTCTTCTTATTTGGTTCAGTACCGTCTGGCATTGT-TTTCTGGAAT
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-4064.000000
s ce10.chrX              4929733 27 + 17718866 A----AAACCAAATTTATTTTAGATGCAAAA-------
s caeSp111.Scaffold409    132708 26 -   201088 GT---ATATCAAA--TAAATTagattcgaaa-------
i caeSp111.Scaffold409  C 0 I 1515
s caePb3.Scfld02_0       3181347 29 +  4147112 tttccaaattata--AGTTGTAAATTTGCAA-------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   342889 27 +   591668 ---------CGAA--AAAATCTTATTTGAAGGGAACaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10268822 939 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-1202.000000
s ce10.chrX              4929760 46 + 17718866 ACAAGTAGAAAAC-----ATATAAATTTATTGCGTAG----------------AAAAAAAAATAGAA
s caePb3.Scfld02_0       3181378 56 +  4147112 -----TAGAAGAT-----ATACAAAGTAAAAGCGGATTTCGGGAAACGGGttcaaaggaaaat-gaa
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   342916 48 +   591668 --aaaaaggggatggttggtcaaaaataagaaaatg-----------------agaaaaaaatggga
i caeJap4.Scaffold17934 C 0 I 1527
e cb4.chrX              10268822 939 + 21540570 I
e caeSp111.Scaffold409    132734 1515 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=1860.000000
s ce10.chrX              4929806 96 + 17718866 AATTGACG-GCTTCACATTGATAGATGTTCAAAAAAATTAATAGTGGTTTTTATGTTTCTGCC-CACGCAAAA-ATTATTTAATTATTTTCATGAGTTT
s caePb3.Scfld02_0       3181434 98 +  4147112 aattgaagcttTTCAAGAAGATGAATGTATAAGAAAATTGGTACTGG-TTCCATGTTCCTTTTGCACGCAAGATGTTGGTTACATGCTTTTCTGGACTT
i caePb3.Scfld02_0      C 0 I 1649
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10268822 939 + 21540570 I
e caeSp111.Scaffold409    132734 1515 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=0.000000
s ce10.chrX              4929902 988 + 17718866  
e caePb3.Scfld02_0       3181532 1649 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10268822 939 + 21540570 I
e caeSp111.Scaffold409    132734 1515 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=2580.000000
s ce10.chrX              4930890 229 + 17718866 TAAAATTGAATTGTCTATGCATCACGCATCTTTTCACCATTACCAAACAACAAAAACACAAAACTTTGGAGTAGGAGATAGGTAGTTGCAATATAGGATCAGGAATTCTAAATACTAAATACAAAATGAAATCATGAAAAGAAAACAGTACAAAGATTGCACATGAAGTTAGGGTAAAGCACGTC-----AAATCTTTAAAGTCAACAAAAACAGCATGGTCAAATCACGCTTC
s cb4.chrX              10269761 179 + 21540570 taaaattgaattgtCTACTCATC--------------------CAAACAACAACTGCTAAAAATG-------AGAGGATATTTTGTGGTATTTCATG-----GAACTCCATGTTCTG---------CGAGTTCA-------AAGATAATACGCTGATTGTA-------TTGTCGAAAAATGCGGCGACTAAAATCTCTAGAGTCAATAAAAACAATATTAGCGCATCACgcatc
i cb4.chrX              I 939 I 565
e caePb3.Scfld02_0       3181532 1649 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e caeSp111.Scaffold409    132734 1515 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=0.000000
s ce10.chrX              4931119 799 + 17718866  
e caePb3.Scfld02_0       3181532 1649 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10269940 565 + 21540570 I
e caeSp111.Scaffold409    132734 1515 -   201088 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=260.000000
s ce10.chrX              4931918 15 + 17718866 AAAATTCCGAAAGCA
s caeSp111.Scaffold409    134249 15 -   201088 AGAACTGCAAATGTC
i caeSp111.Scaffold409  I 1515 C 0
e caePb3.Scfld02_0       3181532 1649 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10269940 565 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=1106.000000
s ce10.chrX              4931933 27 + 17718866 AGCTGCGCA--CCGAAAGTTTGTAAAGCA
s cb4.chrX              10270505 25 + 21540570 AGCTACACG--GCACAAGCATGTAAAG--
i cb4.chrX              I 565 C 0
s caeSp111.Scaffold409    134264 27 -   201088 AGATACACACTGCTAAAGCATGGAGGG--
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3181532 1649 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-16350.000000
s ce10.chrX              4931960 570 + 17718866  
s cb4.chrX              10270530 699 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    134291 485 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3183181 721 +  4147112  
i caePb3.Scfld02_0      I 1649 I 149
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-2301.000000
s ce10.chrX              4932530 41 + 17718866 -TATTTTTGAACTCCCGCGGAAATGTTTTTT-----TCTGTATATAA---------
s cb4.chrX              10271229 54 + 21540570 --aatttgaaaattaagcaTTATTGTTTTTTCGGACTATGTATGTTCcgtaaataa
i cb4.chrX              C 0 I 93
s caeSp111.Scaffold409    134776 47 -   201088 ttcaactCACAGTTACTGAAAAACGTGGTTCAGCGGAATGTATATCA---------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3183902 149 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-994.000000
s ce10.chrX              4932571 31 + 17718866 CTC----AGGCTTTCTAGTTTTTATTTTTGGACCA
s caeSp111.Scaffold409    134823 25 -   201088 TTTTTGAGAGCTTCCT--CCCTAATCT--------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3183902 149 +  4147112 I
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10271283 93 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=372.000000
s ce10.chrX              4932602 31 + 17718866 TTATTATAGAAAAAAAATT---------------------TTCCAATTGGAA
s caeSp111.Scaffold409    134848 20 -   201088 -----------GACAGATA---------------------TTCTGTTCGGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3184051 52 +  4147112 TTATCCAAGAAAACAAATACATAAAAACTGTAATTATATTTTCTAATCGCAA
i caePb3.Scfld02_0      I 149 C 0
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e cb4.chrX              10271283 93 + 21540570 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=-34458.000000
s ce10.chrX              4932633 202 + 17718866 AAGTACTATCCACttt---ttaaaatttaaattctaa-t---------aaatttttttct---aattttaGGGCAAAAGACAT---------------------ACAGTCACTACTAAAATA-------------AACGTGTACTAAAG---AAAGAAGAATATGTAT-------------TCAATCTAGAATTAAATAGTTAGAATAAATGG--------CTAGAAAAAAT------------------------------GCCCAAAAGAGCCT--------------TTGCTAGCTATT-ATTATTGTT----------GAGACCACT------
s cb4.chrX              10271376 296 + 21540570 ---------gaacatt---ttctatttttaattcaaaat---------gaatatatttttcaaaaatactgacCGTAAAACAGTTTTgacaaaaatct------aaattcagcaaaaaaatattAACCACCAACgtatttttaattaaatttaaaCATGAACACTTTCAACCCTACAATCATATTCTGCTAAAAGTCTGATGTAATAA---------TACCctaccaaaaataaaaatatatattctcTCGATGCCACCTGTTCTCAAAAAAGCTTCTTCTTCACA----CTAATAcctatt-attattattattcgcTGAGGGTGTTATGGAGCAT
i cb4.chrX              I 93 C 0
s caeSp111.Scaffold409    134868 152 -   201088 -----------AAACTAACTTAAGTGATAATCATGAA-----------Aggtgttctttt-----------------------------------tctttcaaaggAATCAACAGTACaaagctt--------------------------------------------------------tttttttgggaaaacaTGAAGAAGATA------------------------------------------------------TTTTTGTGAAGCCTGTTCTAATGACTTCGTAATAACTATT-TTTGTGA------------GGTGCCATGT-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3184103 284 +  4147112 -----------AATCT---CTGTATGATTTGCCGGAAGTCTTCCTTCCAAGTTTCCTTTTGAATATTCAGGCTTCGAACACATATTTCATAAAGCTCATTCTTAATTATAACCTGTTGAAAGTTTACGACATTTTGAGATTTGCAGAAA---GAACGGGAGAAGGTGTAAC----CAACAATTATTTTGGAGTCACATATTGAAAACAAACGGCTCCCACCCCATTCAGAAT---------TATTCTCTagatg-aatcttttttttgtaaagctt-ttcttctga----ataatAACTATTATTTGTGA------------GGTGCCAGAT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   342964 1527 +   591668 I
e caeRem4.Crem_Contig0   1802506 2675 -  4500979 I

a score=7651.000000
s ce10.chrX              4932835 51 + 17718866 ----------CGTAACGAAAAAT---TGTGCGAAC---------GAAG------------------CTTTGGAAGTAATGCGTTCAATTGT
s cb4.chrX              10271672 81 + 21540570 ----------CGAAGCGAAAAATGAATgtgcaatttgaaaatgagagaaaagagagccGAGTGAGTAGAGGAAATTAATTCGTTCATTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1805181 63 -  4500979 ----------cggaatgaaaaatgattgtGCGAATGGAAAGCGAGTGG------------------TGAAGAAAGTAATTCGTTCATTTGT
i caeRem4.Crem_Contig0  I 2675 C 0
s caeSp111.Scaffold409    135020 68 -   201088 CGCATCGAAGCGGAACGGAAAACGAATGTGCGAACCG-AGGCGAGTGG------------------AGACGAAAGTAATTCATTTGT----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3184387 59 +  4147112 TGCATCGAAGCGGAATGG-AGATGAATGT-------------GGGTGG------------------CCTAGAAAGTTATTCGCtcatttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   342964 1527 +   591668 I

a score=82952.000000
s ce10.chrX              4932886 454 + 17718866  
s cb4.chrX              10271753 547 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1805244 475 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    135088 483 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3184446 523 +  4147112  
i caePb3.Scfld02_0      C 0 I 2332
s caeJap4.Scaffold17934   344491 464 +   591668  
i caeJap4.Scaffold17934 I 1527 C 0

a score=6706.000000
s ce10.chrX              4933340 12 + 17718866 TAATTGAGAACA
s cb4.chrX              10272300 12 + 21540570 TAATTGAGAACA
i cb4.chrX              C 0 I 1869
s caeRem4.Crem_Contig0   1805719 12 -  4500979 TAATTGAGAAGA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold409    135571 11 -   201088 TAACTAAGAAC-
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   344955 12 +   591668 TAATTGAGAGCA
i caeJap4.Scaffold17934 C 0 I 4889
e caePb3.Scfld02_0       3184969 2332 +  4147112 I

a score=1119.000000
s ce10.chrX              4933352 4 + 17718866 ATGT
s caeRem4.Crem_Contig0   1805736 4 -  4500979 ATGT
i caeRem4.Crem_Contig0  I 5 I 1096
s caeSp111.Scaffold409    135582 4 -   201088 ATGT
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3184969 2332 +  4147112 I
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10272312 1869 + 21540570 I

a score=220.000000
s ce10.chrX              4933356 5 + 17718866 TAATG
s caeSp111.Scaffold409    135586 5 -   201088 CAGTG
i caeSp111.Scaffold409  C 0 I 1659
e caePb3.Scfld02_0       3184969 2332 +  4147112 I
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10272312 1869 + 21540570 I
e caeRem4.Crem_Contig0   1805740 1096 -  4500979 I

a score=0.000000
s ce10.chrX              4933361 993 + 17718866  
e caePb3.Scfld02_0       3184969 2332 +  4147112 I
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10272312 1869 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I
e caeRem4.Crem_Contig0   1805740 1096 -  4500979 I

a score=558.000000
s ce10.chrX              4934354 31 + 17718866 AATCAGAAATGCTA-TAACGATAATCATAAGA
s caePb3.Scfld02_0       3187301 32 +  4147112 AATGAGAAGTTCTAGTTATGGTATCACTGAGA
i caePb3.Scfld02_0      I 2332 C 0
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10272312 1869 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I
e caeRem4.Crem_Contig0   1805740 1096 -  4500979 I

a score=-36.000000
s ce10.chrX              4934385 39 + 17718866 AAAAAGTGA-----AGTTT-TTTATTCTGTGTAGAAACTTTTGGA------
s caeRem4.Crem_Contig0   1806836 39 -  4500979 aaaaagtgaa----agttt--------tgAGTAATCTGTTTTGTATTTAGa
i caeRem4.Crem_Contig0  I 1096 I 3
s caePb3.Scfld02_0       3187333 42 +  4147112 ---GAgcgaaaatcagtttttttgtggtgaagagaatgttttgaa------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10272312 1869 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I

a score=30205.000000
s ce10.chrX              4934424 126 + 17718866 --------AAGAAAACAAATCGGGAAA-------------ACAACATTTTGAGAAAAATGATATCCGAGAAGAAA-ATAGATCAAGTAGCCGA---GTGCTTGCTGTTTGAAATTTGAACGGCAATC---AAGACAGGTCAACAA---CAATATGTT
s cb4.chrX              10274181 127 + 21540570 --------AAGAGAAGAAATAAGGAGTTGAGACAAggtaaatt-------gagaaaaatgatatCGGAGAAGGGG-ATGGATCAAGTAGCCGA-GTATgtttgttgtttgaaattcgaac----------GAGACAAGtcaacaa---aaatgtgtt
i cb4.chrX              I 1869 I 723
s caeRem4.Crem_Contig0   1806878 127 -  4500979 --------aaaatgggaaatagCGAGT-------------ATC-------GGGAAAAATGATATCGGAGAAGACG-ATGTATCAAATAGCTGG-GTATGTTTGTTGTTCGAAATTTGAACAACTAGCGAGAAAACAGGTCAACAGCACAAATGTGTT
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3187375 138 +  4147112 gattcagagaaatgaggaaaaaagaac-------------atcaCAACGGGAGGAAAATGATATTGGAGAAGGCGAATGGATCAAGTAGCCGGAGCGTGTTTGTTGTTCGAAATTTGAACAACGAAC---CAGACAGGTcaacaa---aaatgtgtt
i caePb3.Scfld02_0      C 0 I 1345
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e caeSp111.Scaffold409    135591 1659 -   201088 I

a score=59.000000
s ce10.chrX              4934550 3 + 17718866 ATT
s caeRem4.Crem_Contig0   1807005 3 -  4500979 TTT
i caeRem4.Crem_Contig0  C 0 I 1061
e caePb3.Scfld02_0       3187513 1345 +  4147112 I
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10274308 723 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I

a score=0.000000
s ce10.chrX              4934553 2238 + 17718866  
e caePb3.Scfld02_0       3187513 1345 +  4147112 I
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10274308  723 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I
e caeRem4.Crem_Contig0   1807008 1061 -  4500979 I

a score=801.000000
s ce10.chrX              4936791 12 + 17718866 GAAAACTCCCGT
s caePb3.Scfld02_0       3188858 12 +  4147112 GAAAACATCCGT
i caePb3.Scfld02_0      I 1345 C 0
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e cb4.chrX              10274308 723 + 21540570 I
e caeSp111.Scaffold409    135591 1659 -   201088 I
e caeRem4.Crem_Contig0   1807008 1061 -  4500979 I

a score=1242.000000
s ce10.chrX              4936803 6 + 17718866 AAACTC
s cb4.chrX              10275031 6 + 21540570 aaactc
i cb4.chrX              I 723 C 0
s caePb3.Scfld02_0       3188870 6 +  4147112 AAAGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e caeSp111.Scaffold409    135591 1659 -   201088 I
e caeRem4.Crem_Contig0   1807008 1061 -  4500979 I

a score=10430.000000
s ce10.chrX              4936809 31 + 17718866 TGAGTCAGAAAC-------TCTTCCGGAACTCTCAACA
s cb4.chrX              10275037 38 + 21540570 tgAGTCAGAAACTTTTCCCCCTTCCGGAACGTGTAACA
i cb4.chrX              C 0 I 25
s caeSp111.Scaffold409    137250 33 -   201088 TGAGTCAGAAACAT-----TCTTCCGGAACATTTGACA
i caeSp111.Scaffold409  I 1659 I 21
s caePb3.Scfld02_0       3188876 31 +  4147112 TGAGTCAGAAAC-------TCTTCCGGAAACCTTCACA
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17934   344967 4889 +   591668 I
e caeRem4.Crem_Contig0   1807008 1061 -  4500979 I

a score=2013.000000
s ce10.chrX              4936840 17 + 17718866 GAATTCATGC-TCCGTC----G
s cb4.chrX              10275100 22 + 21540570 GAATATTTGTCCGTGGTTGTCG
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   1808069 17 -  4500979 GAATATTTGT-CACGGT----G
i caeRem4.Crem_Contig0  I 1061 C 0
s caeSp111.Scaffold409    137304 17 -   201088 AAATATATGT-CCTGAC----G
i caeSp111.Scaffold409  I 21 C 0
s caePb3.Scfld02_0       3188928 16 +  4147112 GAATATTTGT-CC-GAC----G
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17934   344967 4889 +   591668 I

a score=60151.000000
s ce10.chrX              4936857 102 + 17718866 T-GCCAATTA----TCAAAGTAGA----AC-----AAGAGA-AAGACCTGC-----------GGTGAAAGA-AACAGACACGATGCCT--------TACAAAATTAGTGGCTTCCTGTTCTGTCAGAATAAATAAGG--
s cb4.chrX              10275122 122 + 21540570 T-ACCAATTATCC-TCAGAATATA----GTATGAAAACGGC-GAGCCTCGAGGT------GGGTTGAATGAGAGCAG--ACGATGCCTCACACATACACGAAATTAGTGGTTTCCTGCTCTGTCAGAATAAACAAAG--
i cb4.chrX              C 0 I 1424
s caeRem4.Crem_Contig0   1808086 105 -  4500979 C-TCCAATTATCTATCAGAACATT----GT-----AGAGGA-GGGTCCCGA-----------GTTGAAAGGGAGCAG--ACGATGTCT--------CACGAAATTAGTGGTTTCCTGTTCTGTCAGAATAAATAAGG--
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409    137321 108 -   201088 CAACCAATTATCT-CAAGAACATAGAGTGA-----AAGAGA-GAGTCCCGA-----------GGTGAAAAC-AGCAG--ACGATGTCT--------CACGAAATTAGTGGTTTCCTGCTCTGGCAGAATAAATAAGA--
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3188944 104 +  4147112 C-TCCAATTATCT-TAAGAACATA----GT-----AAAGGA-GAGTCCCGA-----------GGTGAAAGCAAGCAG--ACGATGTCT--------CACGAAATTAGTGATTTCCTGTTCTGTCAGAATAAATAAGG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   349856 118 +   591668 T-GCCAATTATCT-TTAGAACAAA----GT-----AAAAGATGCGActtgaaggaaaaaaagagcGAAACACAGACG--GCAATATAG--------CACAAAATTAGTAGCTTCCTGTGTTGTCAGAATAAATAGGAGA
i caeJap4.Scaffold17934 I 4889 C 0

a score=-558.000000
s ce10.chrX              4936959 13 + 17718866 TTTAAGAAAATC-C-
s caeRem4.Crem_Contig0   1808192 13 -  4500979 TCTGCGAAAATCC--
i caeRem4.Crem_Contig0  I 1 I 708
s caeSp111.Scaffold409    137430 12 -   201088 TCTGTAAAAACT---
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3189048 12 +  4147112 TCTGTAAAAACC---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   349974 13 +   591668 AACGAGAAAATC--C
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10275244 1424 + 21540570 I

a score=600.000000
s ce10.chrX              4936972 1 + 17718866 C
s caeSp111.Scaffold409    137442 1 -   201088 C
i caeSp111.Scaffold409  C 0 I 690
s caePb3.Scfld02_0       3189060 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   349987 1 +   591668 C
i caeJap4.Scaffold17934 C 0 I 257
e cb4.chrX              10275244 1424 + 21540570 I
e caeRem4.Crem_Contig0   1808205 708 -  4500979 I

a score=-7041.000000
s ce10.chrX              4936973 525 + 17718866  
s caePb3.Scfld02_0       3189062 762 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   349988 257 +   591668 I
e cb4.chrX              10275244 1424 + 21540570 I
e caeSp111.Scaffold409    137443 690 -   201088 I
e caeRem4.Crem_Contig0   1808205 708 -  4500979 I

a score=-278.000000
s ce10.chrX              4937498 21 + 17718866 ATTC--------------------------------------CAATATTTAAATTTTGG
s caeSp111.Scaffold409    138133 17 -   201088 ATTC--------------------------------------AAATGTT----CTTTGG
i caeSp111.Scaffold409  I 690 C 0
s caePb3.Scfld02_0       3189824 55 +  4147112 attcTAATTTTAACCGAAAACTCTCGAGGTTTAATCAAACCAAAATGTT----CTTTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   349988 257 +   591668 I
e cb4.chrX              10275244 1424 + 21540570 I
e caeRem4.Crem_Contig0   1808205 708 -  4500979 I

a score=1005.000000
s ce10.chrX              4937519 20 + 17718866 ---AGAAAATCTTGACACAACTT--
s caeRem4.Crem_Contig0   1808913 22 -  4500979 ---aaaaaatattGCATCATCAacc
i caeRem4.Crem_Contig0  I 708 C 0
s caeSp111.Scaffold409    138150 22 -   201088 ATCAAG-ATTGTTGTCAcatctt--
i caeSp111.Scaffold409  C 0 I 15
s caePb3.Scfld02_0       3189879 23 +  4147112 ATCAAGAAGTATTGCCACATCAC--
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold17934   349988 257 +   591668 I
e cb4.chrX              10275244 1424 + 21540570 I

a score=19372.000000
s ce10.chrX              4937539 42 + 17718866 TTGCAACAT-TTTTTCTCATTT-GCTTCCTGAAG-AAGGTTGTGC
s cb4.chrX              10276668 37 + 21540570 TTGCAacgcttttttttcattttgcttCCTGAAA-A-------GC
i cb4.chrX              I 1424 C 0
s caeRem4.Crem_Contig0   1808935 44 -  4500979 ttgaaacatttttttttcattttgcttCCTGAAG-AAACTTGTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    138187 41 -   201088 TTGCcacac---tttttcatttagcTTCCTGAAA-GAGTTTGTGC
i caeSp111.Scaffold409  I 15 C 0
s caePb3.Scfld02_0       3189917 43 +  4147112 Ttgcaacac--ttttttcattttgcttccTGAAACGGGTTTGTGC
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold17934   349988 257 +   591668 I

a score=241358.000000
s ce10.chrX              4937581 363 + 17718866  
s cb4.chrX              10276705 443 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1808979 382 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    138228 392 -   201088  
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3189960 374 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold17934   350245 410 +   591668  
i caeJap4.Scaffold17934 I 257 I 1733

a score=-4615.000000
s ce10.chrX              4937944 29 + 17718866 TAAGTCACCCAGGCCCAAAAAAATTCGAA-----
s cb4.chrX              10277148  8 + 21540570 -------CT-----Cccgat--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1809361 13 -  4500979 -------CGCTAAACCAGAA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    138623 33 -   201088 TATTCTACTCGCAACCCAAA-GATTCGACTGGAT
i caeSp111.Scaffold409  I 3 C 0
e caePb3.Scfld02_0       3190334 29 +  4147112 I
e caeJap4.Scaffold17934   350655 1733 +   591668 I

a score=15806.000000
s ce10.chrX              4937973 323 + 17718866 TTCGTCAAAGCCTTTT-------------TCTATTCATTTTTCATTCATTGAAAATTGAAAAAAAAAATCCTGCCAAA-----TTGTTATTGGAAAAGATATGTTTTTTCGCTTACTGG-TTTTATTCGCTGACG----------CTAGTTTTGACGTTTT--------TCGAG-----------GGCTTC--TGATCCACTTTTCCTAAATCAAAGAGATTAG--TCTATTTTTGAGA--ATGT-TATGTTCAATGTA---GGATGA-GT-CTTTAGAGAAGATGTACTTTTTTTTTTGGAAGATTAGCTAATTG--AAGAATATTCTGTGGGAGGAAGAACTTGAAAAATAAAAATCGTCAGTTTTGTTTTAATTTTTAAAAA--------------
s cb4.chrX              10277156 310 + 21540570 ttcgtttttttttcttc------tttgctttttgtaatttttcattcattga------------aaaatctttaGGAG-----CAGC--------------CTATTTCTAGAAT--------CAGATCCTTGATG----ACAACCacgattttgaagtttt--------caaaaatacgaaaaaggGCTTC-ATGATCCATTTCCCCCGTATTAC--AGATTAG--TCTATTTTTGAGAAGTTgcatttggatttttgag--gaaAGACGT-CTTTA---AAGGTGCACTTCCTAAT---AAGGATTAAA-----------AAGATT-TAT---CAGATT--GTTACAGAGTTAGAA-CACAGGATTAATGATAACAGTCAGAAGCATTTTCAGCTCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1809374 285 -  4500979 TTCGACAgagtttcgt-----------ttttttgtcatttttcattcattga------------aaaatctttagaag-----ttg----------------tttttctagctttttct-tctAGTTTCTCCATGTTTCACTGACGAAGACTTGACGCTCT--------TAAAA-----------GGCTTC--TGATCCAATTCCTTCGTATTTC--AGATTaa--tctatttttgagaa-ttgt-tctgtttttttgggGCGGAAAACGT-CTTTA---GAAGTGCACTTCCTAAT---AAGGATTAGGTGCttg--ctcaatttt-tgtggGCGGTTT--TTTATAATATTATA-----------------AAGAGTCATAAAG-------------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold409    138656 260 -   201088 ---------TTCGTTTCaa------------ctttcatttctcattcatcgaaa-------aataaaatcttcGAGAGAAAGACCgt--------------tgttttttcgtttcctgTCTTTCTTCTACTGACG----------ACAACtttgacgtttttttcttctggaaa-----------ggCTTCTTTGATCCAGTTATCCCATATTAC--AGAttaacttttatttttggga--TTGT-TCTGGTTTATAAA---GTGAGACGTGTTTTG---AGGATGCACTTCCTAAT---AAGGATTAGCTGATTGATTTTAGTATA-TGTGGGAGGA-------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3190363 289 +  4147112 TTTGACAGAGCTGCTTcgattttctcactttttttcatttcaaattcattggaa----------aaaattt------------cagt--------------tgttttttcgtttccttt-----------tgACG----------ACAACTTTGACGTTTTTGTC----GGGAA-----------GGCTTC--TGATCCAGTTCCTCCGTATTAC--AGATTAA--TCTATTTTTAAGA--TTGT-TCTGGTTTATAAA---ATAAGACGT-CTTTA---AGAATGCACTTCCTAAT---AAGGATTAGCTGATTGGTTTGAATGCA-AGTAGAAGGAAT--CTGAAAGTATCATT--TCTGGAATAAGTATTCACTCCTATGAA--------------
i caePb3.Scfld02_0      I 29 I 73
e caeJap4.Scaffold17934   350655 1733 +   591668 I

a score=-536.000000
s ce10.chrX              4938296 16 + 17718866 CGTTTTGATGTATTTC-
s cb4.chrX              10277466 12 + 21540570 CATTTT----TATTTC-
i cb4.chrX              C 0 I 308
s caeSp111.Scaffold409    138916 10 -   201088 ---TTT----TGATACA
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3190652 73 +  4147112 I
e caeJap4.Scaffold17934   350655 1733 +   591668 I
e caeRem4.Crem_Contig0   1809659  7 -  4500979 I

a score=0.000000
s ce10.chrX              4938312 7 + 17718866 AATATAT
e caePb3.Scfld02_0       3190652 73 +  4147112 I
e caeJap4.Scaffold17934   350655 1733 +   591668 I
e cb4.chrX              10277478 308 + 21540570 I
e caeSp111.Scaffold409    138926 0 -   201088 C
e caeRem4.Crem_Contig0   1809659 7 -  4500979 I

a score=-48191.000000
s ce10.chrX              4938319 301 + 17718866 ----TTTAGATTAAAGATGGAGTTGTGATGTAGGGAACA--------TATTTTATATATCTTCAAACTTGCCTAAAATTTGAAAAT----------TCATAATT---------GTTAGGTTTTAGCTTAA-AAAATAA-----------CCGAGATATAATTTTTATACCAAA-----------TTAGAGGAGTGCATTAC-------TA-----ATATAGA---------------AATTATGTTACATGTTATCTATGTGAGTTTTTAGAAGTGGGCTACTTTAAAATATTTCGATTATTCAGCATTAGTGATTGAGATC----GATCCTTCGATTTGAGATATCGGCTACAGTAACAAATTTACTTGCTTCC----ATTTCTGCTTC--------
s caeRem4.Crem_Contig0   1809666 291 -  4500979 ATCAGAcaaatttgaac--aatttctaTTTGCATTTTTA--------TACTGTACTC-TAGTTatttttgtgcaaaatttcaaaaa----------tcatttgc----------AGAAGTTG-TGTCTGATGTAGTAATTTTTCTTACCACAAGCTTAATATTCCGGATTAGA-----------CTTGAACAAATATTCAC--------------GAATAGA---------------AAAAGTGTTG---GTTCT-----------TCGAAAAG-----TATCTTATCAAGCCT-GCATGCACTGTA--------AATAATACTT-ATATATTAGTTTCTTTGTATTGGATTTGATAACAGGAAAtcattctt------ttgttttcagtctAGGTGA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold409    138926 165 -   201088 ------------------------------------AAA--------TACGGG-----------------------TTTCTAGGAA----------CCTTTTTT-------CAACCGAATTG----TTGA-GAAACA-----------------------------------------------CTCAATGTTGTATTTTC-------TCTGCTTGTATAGA---------------------ACTA---GTTAC--------------AGGag-----aactctgaaaaattt-gatttctctagattttt---caaaata----attcttccgg-------------------------gaaaacaagttt------ttctttgatac--------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3190725 333 +  4147112 ----TTTAGATTCGAAA--GATTAGAGAATTGATTAAAATTGACTATTATGggattt----tttgctttattc---TTTCCAGGAACTCAGAATTGCCATATTCATGAAAGCAGGCGGGTTGCTATTTGA-GTACCAA-------TGCGGAAAGCTAGATTGTTAAAAGCAAATTTCTAGAGGCCTCCAAGATTTATCTACAAATTATTATGTATGTCTAGACTACAAATATGAAGTTAATGTGCTG---ATTA-----------------AAA-----CGCACTGTACAATCT-CGTTTTTATCTAGCTGTAAACAAAATACTTCATTCTTTAGTCttt---tgtcaaattt-------caaaaatatctttccGAAGTTCTTTGCTTC--------
i caePb3.Scfld02_0      I 73 I 14
e caeJap4.Scaffold17934   350655 1733 +   591668 I
e cb4.chrX              10277478 308 + 21540570 I

a score=116495.000000
s ce10.chrX              4938620 894 + 17718866  
s cb4.chrX              10277786 845 + 21540570  
i cb4.chrX              I 308 C 0
s caeRem4.Crem_Contig0   1809957 770 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    139091 761 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3191072 942 +  4147112  
i caePb3.Scfld02_0      I 14 C 0
e caeJap4.Scaffold17934   350655 1733 +   591668 I

a score=134322.000000
s ce10.chrX              4939514 371 + 17718866 GA-TTGAGCACGGTGATAAGATTCACCTCAAAACGTCTCCAGGGAC---CG--CTAT---CTCGTTTTTATTGGTTCTTCTACC-TTTTTC---GTTTTTTTTTCTACATCG-----------TT-TTGGTTTTTGATTCAAGAAGAATT---T-----TTGTCCT--------TCTACAAGAGAAAAAACTTCCAATTAATTGGAAACGAATACGAGATGAAGGCGCTTGTTGGGG---GGAC----ATGCCCTCCACTCATTCTCGAAACCATATACT----CTTAGATGAAGC----------TAACGA--------AAGAGACACTAGGCTT--------------------GGAAATATCTGGCATA--TATAAGCGTGTGCCTTC-----------------------AAGACACAATGAACCAAA--AGGATCA---------------ACTGCG-----TCTTTCATATGTTTTTGTATGTACACAATTTTGTTATTAAA
s cb4.chrX              10278631 386 + 21540570 GA-TTGAGCTCAATGATAAGGTTCACCTCAAAACGTCTCCAGGGACCAACTG-CTATTCTACTCTTTTTATTTGTTCTTCTACCTTTTTTC---CACTATCCTT----CTCG-CGTGTCAAGCAC-TCGGTTTCTGATTCCCG-----TTTggt-----tttttctctcctttttttgcaA-GGAAAAAACTTCCAATTAATTGGAAACAAATACGAAATGAAGGCGTTAGTAGTGA-----------AGACGTTTCATT---CCCCGAAACCATATACC----CTTCGACGAAACAT--------ATTTGA--------TGAATCCATTGAGCTCTCA------------AAAACGAGCATATCTGGAATG-----ACATGTGTGTCATT-----------------------GAAACACATTGTACCAAAACTGAATATATATGTATTGCTTTCAGTGCG-----TGTT-----TGTCT----------------TTATTACGAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1810727 417 -  4500979 GA-TTGAGCACGGTGATAAGATTCACCTCTAAAATTCTCTTGGGAC---CTC-TTAT----CTTTCTTTATTTGTTCTTCTACC-TTTTCC---TACTATCCTTTCGATTCGTTGTGTCAAgctt-ttggtttttgattcacg-----tt---t-----tcttcctc-------tttgcaa-aaaaaaaacttccaattaATTGGAAACGAATACAAAATGAAGGCGTTAGTTGGGACATGTACTCTGACACTCTTCATTT-CTCCCGAAACCACATACT----CTTAGATGAAACATAGA-GCCAAGACGC--------TGAATCCATTGAGCTCACattctgaaagaagaaaaaagaaatatctgGCA-------ACATGCGTGTCTTC-----------------------GCAACACATTGTACCACA--CGAATAT-----TGCCTTTTTCAGTGCG-----TGTTTCATATGTTTATGTATGTATACAATGTCATTATGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    139852 423 -   201088 GA-TTGAGCACAATGATAAGATTCACCTCCAAACGTCTCCTGGGAT---CTAgtttcccccttttctttatttgttCTTCTACC-TTTTTCCAATACCCTCTTCTCCCCTTCACGTGTCAAGGTT-TCGGTTTTTGATTCGCG-----TT---TCCCCGCCCTCCCC-------CTTgcaggaaaaaaaacttccaattaattggaaacgaataaaaaatgagggCGTTAGTTGGGACATGTACTCCGACACTCTCCATT---CCCCGAAACCATATACT----CTCAGATGAAACATAGA-CCCAATGC----------TGAATCCATTGAGCTTGCATtcagt------aaaaaagaaatatctgGCA-------ACATGCGTGCCTTCGGTCGTC----------------ACAGCACATTGTACCAAG--CGGATAG----------CCTTTAGTGCG-----TGTTTCTTATGTTTATGTATGTATACAATGTCATTATTAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3192014 435 +  4147112 GATTTGAGCACAATGATAAGATTCACCTCTAAACGTCTCATGGGac---c---ttcttcccttttctttATTTGTTCTTCTACC-TTTCTT---TGCTCCCCGCTTCCTCTAACATGTCAAGCTTCTCGGTTTTTGATTCACG-----TT---T-----CCTTCTtc-------cttgc---aaaaaaaacttccaattaATTGGAAACGAATACAAAATGAAGGCGTTAGGTGGGACATGTACTCTGACACTCTTCATT---CGCCGAAACCATATACT----CTCTGATGAAACATAGAGCCCAATACGCTGAATCCTTGAATCCATTGAGCTCATATTCAGTTG----GAAAAGGAAATATCTGGCA-------ACATGCATGTCTTCAGTCTTCTCCAAGCCATCTTCCTTCAATACATTGTACCAAA-------GG----------CCTTCACTGCG-----TGTTTCATATGTTTATGTATGTATACAATGTCATTATTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   352388 327 +   591668 GA-TGAAGAACAATGATATG------------ACGTCTCTAGGGAT------------------------TTCGATCTTTTACC-TTTTCT------------------CCGATCTTAAaagatt-ttggtttttggtttGTA-----TG---T-----ATCCTTT--------TTTGCT--AGGTGGGACGT-AAATTAATTGGAGCCGCATACAAGATGAAGA----------GAAATGTAC-------------------TACCGAAATCTTATACTCGCACccagacgaaaaaaaaagtccagTGCTA--------GTAATTCA--------------------------GAGGGAATATCTGGCGACGAGATATGCACACGACTCT-----------------------TCAACATTATTTAGAAAA--CG--TTG----------TCCTCGATGCGAGACATCTcctatgtatgtatgtatatgTACAATGTTATTATAGAA
i caeJap4.Scaffold17934 I 1733 I 1701

a score=-9610.000000
s ce10.chrX              4939885 179 + 17718866 TGTTG------------CTTC---CAATTGTCAAAATGATATAA---TAAAATAACAAAATTAAA--------------CAGGCTTGTTCTTCGCTGTTAA----A---------ATATGTATTACTACCTCTTCTA-----CTTTTTTC-----AAGAAAATT---------CA-AAAAAGTCCTGCAAACTGAATGATA----GTAGTTGGGCTCCTG-----------GGATAGACAAAGAAGCATCAGGA-AGTAC
s cb4.chrX              10279017 190 + 21540570 TGTT---------GTTTCTTCTTTACTCACTCAATTAAGCATAATGCTGCGACCAAGAaaccctt-------------------ttttcttccatctATCCTCTTA---------GTG--TGGTACTACAACctcat-----ttttattc-----aaaaaattccgttttCTGCA-AGAA---------AATGGGATGATA----GTAAAGGATGATGGA-CTAGT-----GGATAGACAAAGAAGCACTGGGA-AGTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1811144 231 -  4500979 TGCTTCCAAGAAGATGTCTTC----CAGTGTTAATTAAACATAA---TGCGACCAAAAAATCGTCTCGGAGATTgaactcaacattttttattattttccccACCA---------ATATTTGTAACTTCAGCATCTT----AATTTATCCCTGTGAATATAATCATACATATATACAGAA---------GACCAGATCAAGCCGCTCACGAGGCGATAGATCTGGTAAgcaggaaaaataaaaagaaagcaAGATAGTAT
i caeRem4.Crem_Contig0  C 0 I 162
s caeSp111.Scaffold409    140275 202 -   201088 TGCAGCCAACGTCTCCTCCTC-------TGTTAATTAAACATAA---TGCga-caaaaactcact--gcGAAATGAACTCTCAGTCGTGTGTAGCGTTTCCATCcaacaaaaatgatgtttcTGAATATATTACCGT---CTTCttattc-----ataaaattt-tcttcctGCA-AAAA------------TAGATGATA----GTGAATG-------A-----------AGATAGACAAAGGAGCATCAGGA-AATGC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3192449 200 +  4147112 TGCAGCCAacgtcttctcttcttccaatttttaatTAAACATAA---TGCGA-CAAAAAACCAAC---CCACACGTGGTTTGAACTGTGTTTTGTCTATCAACTCA---------ATGTTATTGAGTGCATTacaacaaatttttcattc-----aaaaaaaat-------tgca-aaaa-------------atatgata----gTAAAGGCT--TCAG-----------GGATAGACAAAGAAGCATCAGGA-AGTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I

a score=18517.000000
s ce10.chrX              4940064 84 + 17718866 GTCGCCTTCCTGATGCTGTCGCTTTTT----------ATCCGTTGTT--CGTTTTTCTTTTCCCATAAATCAACTCACAGATAATGACTTTACTTT-
s cb4.chrX              10279207 81 + 21540570 GTCGACTTCCTGC--CTGTCGCTTTTT-------------CGTtgttcccatttttcaatt-ctatcaATCAACTCAAAAATAATGCACTTTCCTTT
i cb4.chrX              C 0 I 1290
s caeSp111.Scaffold409    140477 87 -   201088 GTCGACTTCCTGC--TTGTCgcttctttcgaaaaaatttcagttgtt--cGTTTTCT-----CCATAAATCAACTCACTCTTTATgtacttttttt-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3192649 87 +  4147112 GTCGGCTTCCTGC--CTGTCGCTTCTTTTAAACGAATTGCCGTTGTT--CGTTTTTC-----CCATAAATCAACTCATCCTTTATGTACCTACTTT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e caeRem4.Crem_Contig0   1811375 162 -  4500979 I

a score=-77.000000
s ce10.chrX              4940148 27 + 17718866 AGGAATATCTTGTTGGAGTA------GGAACTT
s caeSp111.Scaffold409    140564 25 -   201088 ggt--tatcTCAGAGGAAGA------AGGGCTT
i caeSp111.Scaffold409  C 0 I 198
s caePb3.Scfld02_0       3192736 33 +  4147112 TGTGATATCTCCGAGTTAGACATCTCGGAATTT
i caePb3.Scfld02_0      C 0 I 118
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10279288 1290 + 21540570 I
e caeRem4.Crem_Contig0   1811375 162 -  4500979 I

a score=0.000000
s ce10.chrX              4940175 65 + 17718866 GTGCATTTAAAATGTGTGACCTTTTGTCTTTGACTTGTAAAAGTCGTAGGCAGTAGCAGACACAC
e caePb3.Scfld02_0       3192769 118 +  4147112 I
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10279288 1290 + 21540570 I
e caeSp111.Scaffold409    140589 198 -   201088 I
e caeRem4.Crem_Contig0   1811375 162 -  4500979 I

a score=-387.000000
s ce10.chrX              4940240 72 + 17718866 AAAACCTTTCAAATTATAGCACCGGTTTTAGGGTCTCAATTTAAATAAGAACTGCAATCATACTTTTGATCG
s caeRem4.Crem_Contig0   1811537 42 -  4500979 GAAACCTT---AAATata------------------caataaaaattaaaattaaaa-----cttgtG----
i caeRem4.Crem_Contig0  I 162 C 0
e caePb3.Scfld02_0       3192769 118 +  4147112 I
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10279288 1290 + 21540570 I
e caeSp111.Scaffold409    140589 198 -   201088 I

a score=-24117.000000
s ce10.chrX              4940312 563 + 17718866  
s caeRem4.Crem_Contig0   1811579 448 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3192887 390 +  4147112  
i caePb3.Scfld02_0      I 118 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10279288 1290 + 21540570 I
e caeSp111.Scaffold409    140589 198 -   201088 I

a score=2055.000000
s ce10.chrX              4940875 11 + 17718866 AAATTGTCGCG
s caeSp111.Scaffold409    140787 11 -   201088 AAATTGTCTCA
i caeSp111.Scaffold409  I 198 C 0
s caePb3.Scfld02_0       3193277 11 +  4147112 AAGTTGTCACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10279288 1290 + 21540570 I
e caeRem4.Crem_Contig0   1812027  0 -  4500979 C

a score=122895.000000
s ce10.chrX              4940886 248 + 17718866 TATCCTTCTCAGTTTCAGCAAACAATTCATTGCTTATGAACTCC---TATCCTCT--TACTA-TTTTCTTATTAATGTTTTA-----------------TCCAGCA---------------GCCGGGTTACACGAGA-CTCTC------CTTCTCTTCCACACCAAAAGTATCAAGTGGCC-TTTCGAATCCAATTTGATTTCGGCACTTTTTTGTGCTCCACGTTTTTTTTCTTCCT--TTTTTTCTTCTCTACAACTCGGTTTTAGAATGCGA--AAATCT-TTCCTATTGTGCTTC
s cb4.chrX              10280578 285 + 21540570 TATGCTTCTCACTTATAGCAAACAATCCATTTCTCATGAACTCCCCTTATCCCTTGGCACTATTTTTCTTATTAATGTTTTACGCACGCCAGCTCGTTTTCCCTACGCGACAAGAGGTGGTGAGAGGTTACTCGAGA-CCTTTTTCTGTCCCCGATGCCAAACCAAAAGTATCAAGTGGCC-TTTCGAATCCAATTTGATTTCGGCAC-TTTTTGTGCTCCACGTTT--------CCCCGTTTTTGC-TACGGACGACcttcttttaaaatagaat-gaattt-tgtttcttttgtcat
i cb4.chrX              I 1290 I 974
s caeRem4.Crem_Contig0   1812027 226 -  4500979 -------ctcggTTATAACAAACAATCCATTTCTCATGAACTCC---TATCCCCT--TACCA-TTTTCTTATTAATGTTTTA-----------------TCCCGAC---------------AGGAGGTTACACGAGA-CTCTC------------TGCCAAACCAAAAGTATCAAGTGGCC-TTTCGAATCCAATTTGATTTCGGCACTTTTTTGTGCTCCACGTTT--------CCC--TTTTTGC-TACGTACAACCTTCTTTTAGAATGGAG--AAATTT-TGTCTTTTGTGCTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    140798 235 -   201088 TAAACTTTTCATGACAAGCaaacaattcatttctcatGAACTCC---TATCCCCT--TACCA-TTTTCTTATTAATGTTTTA----------------TTCCCGAC---------------ATGAGGTTACTTGAGA-CTCTC------------TGCCAAACCAAAAGTATCAAGTGGCC-TTTCGAATCCAATTTGATTTTGGCACTTTTTTGTGCTccacgttt-------------ttctttcttacgTACAACCTTCTTTTAGAATAACGGAGCATTTCTGTCTTTTGTGCTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3193288 234 +  4147112 CACCTTACTCACTTATAGCAAACAATTCATTTCTCATGAACTCC---TATCCCCT--TACTA-TTTTCTTATTAATGTTTTA-----------------TCCCGAC---------------AGGGGGTTACACGAGACCTCTC------------TGCCAAACCAAAAGTATCAAGTGGCCTTTTCGAATCCAATTTGATTTCGGcacttttttgtgcttttccctt-------------tttttgc-tACGTACAACCTTCTTTTAGAATGGCGGAAAAtct-tgtcttttgtgctct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I

a score=449.000000
s ce10.chrX              4941134 6 + 17718866 GACGCG
s caeRem4.Crem_Contig0   1812253 6 -  4500979 ATTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    141033 6 -   201088 GCTTTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3193522 6 +  4147112 actttg
i caePb3.Scfld02_0      C 0 I 377
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I

a score=-1707.000000
s ce10.chrX              4941140 36 + 17718866 CTCTTTCTAGCATGATGCCAAAAACAGAAATCACGA-------
s caeRem4.Crem_Contig0   1812259 29 -  4500979 --CtttttttCC------------GAGACTTTTGGAGTtataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    141039 32 -   201088 CGATTTCTgtcttga----agaaaaagatatttcGA-------
i caeSp111.Scaffold409  C 0 I 564
e caePb3.Scfld02_0       3193528 377 +  4147112 I
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I

a score=-420.000000
s ce10.chrX              4941176 219 + 17718866 CAAAAATATACGAAGGGCACTTTTTACACGATATTTTAAGGTACATGTAGCCCGTACCGTTTGTTCTGGAATATAAATTGAAATTTTACCTCGAATTCTTCTAGACTCAAATACAATTGAACTTCAAG------TTTTA---AGATTA-------TGTTTGTAA-----AAAATTAATCAAAAATTCA-----------------CTTGAAATATTTTTGGGCCCTGTTGCTGAATTGTTTGATGTTTGGCAACTTT
s caeRem4.Crem_Contig0   1812288 230 -  4500979 gaaa-----acgaaagaagcTCATT-CATAAT-CTTCAGAATACAAAGAAT-----------------GGATGT-AATTAGATTATAGTTTCTGATACCCATCCATTCAATTTTCCTTTAGCTTCAAGACAATATTTTATATGGATTGAGAAGATTGTTCataatccataaaattattcATAAATTGAGAGTGCAGTTTCCTGGCCGTGAATGAGTTTTACTCCCTACT--TTATATGCGTGGTTTCAGTCAGCTTT
i caeRem4.Crem_Contig0  C 0 I 156
e caePb3.Scfld02_0       3193528 377 +  4147112 I
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I

a score=0.000000
s ce10.chrX              4941395 191 + 17718866 GGTAATTTTAGCAATTTCCAAGCTTTAGTAGATCAAAAATTTTGAAAAAAGTTCGGTAATTTGAAGAGTGGATGTAAATTATTGAGGATTTGTTTTACAATGCTCCCAACATGAAATATCTAAGACATACTATGAAAAAGTTCGAAATAATTATTTTTTGTTAATTGAAAAAAGCTCATAATTGGGCGGAA
e caePb3.Scfld02_0       3193528 377 +  4147112 I
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I
e caeRem4.Crem_Contig0   1812518 156 -  4500979 I

a score=237.000000
s ce10.chrX              4941586 23 + 17718866 TATTGGTTTTAAATAGAGTAATC
s caePb3.Scfld02_0       3193905 19 +  4147112 TGTTGGTTATatatgaag----a
i caePb3.Scfld02_0      I 377 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I
e caeRem4.Crem_Contig0   1812518 156 -  4500979 I

a score=6542.000000
s ce10.chrX              4941609 134 + 17718866 AGAACAAAATTTTCAATAGAAATTT-----CCTTGTTTATTTATTGTATTTTTATTATTACCTATAACCaaaaaatttaaaa------acttattaaaaaa------gtttttaaattattaatagttaattttcaaaataaCAAGTATTT
s caeRem4.Crem_Contig0   1812674 132 -  4500979 AGAACAAAATCTTC-ATCGAATCTCTTCAACCctatctattttttctt-------------cgtaAAGCAAC-GATCTATGAGACGCTatctattgaaaaatatccGGTCTTC--GTTATTCATtccacttttt--aaaaattgagttttt
i caeRem4.Crem_Contig0  I 156 I 60
s caePb3.Scfld02_0       3193924 128 +  4147112 agaacaaaatctTC-ATCGAATCTC-----CActatctattttttcttct----------ccacaaACCAACTGATCTATGAGACGCtatctattgaaaaatatccgGTCTTC--GTTTTGCTTCgcagttttt-----cttcgatttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I

a score=-96.000000
s ce10.chrX              4941743 50 + 17718866 CGAAA-----GTTCaaaaaaaaaattaaaatgagtttt-------------taaaaattattaCTTGA
s caePb3.Scfld02_0       3194052 66 +  4147112 tgaaactcatttttaaaagTAAAACCGAGATTTTTCTTGACCTCTTCTCCGTGAGAATTTTG--TTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I
e caeRem4.Crem_Contig0   1812806 60 -  4500979 I

a score=-782.000000
s ce10.chrX              4941793 22 + 17718866 GTG---CAAAATTCTAAACCATTTG
s caeRem4.Crem_Contig0   1812866 21 -  4500979 GTGCGAGATGATGGCCAACAA----
i caeRem4.Crem_Contig0  I 60 C 0
s caePb3.Scfld02_0       3194118 15 +  4147112 ------GAGAATTGGCAACAA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141071 564 -   201088 I

a score=22246.000000
s ce10.chrX              4941815 82 + 17718866 AGTGCGTGTATGTCTCTAACATCT-AAGAAGCTTTAAAAGCTCTCAGACTTATTTTAAGCCTATTGGGCTTTCTCCAGCAGAA
s caeRem4.Crem_Contig0   1812887 81 -  4500979 AGTGTTTCCATGTCTGTGAGAACT-GAAGAGC-TTTGAGGTTCTTAGAGTTATTTTGAACCTACGTAGCCTGTTTTATGGAAA
i caeRem4.Crem_Contig0  C 0 I 126
s caeSp111.Scaffold409    141635 82 -   201088 AATGTTTCTATGTCTGTGGGAACCGGGAGAGC-TTAGAGGTTCTTAGACTTATTTTAAGTCTCTAGGACCTACTCCAATAAAA
i caeSp111.Scaffold409  I 564 C 0
s caePb3.Scfld02_0       3194133 81 +  4147112 AGTGTTTCCATGTCTGTGAGAACT-GAAGAGC-TTAGAGGTTCTTAGACTTATTTTAAGTCCCCCAGACCTACTTCATTAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I

a score=-5338.000000
s ce10.chrX              4941897 108 + 17718866 TGGAAAA---------------------------------TCTTGTTTCGTTATCTCTGGGAAACACTTTTGAAAAAAAAAA-GTTTTA----TAGTTTCTATGTTTCCTTAATTTTAACTTCTTTCAAA-------------AATATTTTCACAAAAT
s caeSp111.Scaffold409    141717 141 -   201088 CACAAAGCTCTCTGCTTAAGGAGAGATAACAGAGCTTCTCTCCCATTTGGT------------GCAAGTCTTGGTTAAATAT-gtcctg----aattttttata-ttcattcattttggcGTGGGATAAGCCAAATGAGTACTAACACTTAGATGAAAC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3194214  89 +  4147112 CATGCAG---------------------------------TCTTATTTG--------------GCACTTCTGGTCTAAATTTAGTTTTGCAATACTCTTCTATA------ACATTTT-------TATAAG----------AGTAACCATTTAATAATcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeRem4.Crem_Contig0   1812968 126 -  4500979 I

a score=-2475.000000
s ce10.chrX              4942005  91 + 17718866 -CACAAATAACTAGC-------TTTTCTGTATTTCTGATTATTCTGAATTTCG-----AAAAATTCCCC--------------ATAGTATGAGAAATTTGAATGGTAGTGTTTCATAA----------
s caeRem4.Crem_Contig0   1813094  90 -  4500979 -cacaaa-aactatt---------------------------ttccaataaaGTGTCCAAAAATAGCCA---GAATTCCTAAACTGCCATATAAAATTGAAACG------TTTTATGACATTTCGCCA
i caeRem4.Crem_Contig0  I 126 C 0
s caeSp111.Scaffold409    141858 107 -   201088 TTCCAAA-AGCTAGCCGAcaatggtttttgaaaaaagttcaattttaatttggtAGTCAAAAATAGCTTCGGAATTGG----TCTGCCATATAAGGATAAAACG------TTTCATGA----------
i caeSp111.Scaffold409  C 0 I 19
s caePb3.Scfld02_0       3194303 109 +  4147112 tcataaa-aattgaactacTCCACTTTTTTATCTTCGTTCAATTCCAATTTGGTAGTCGGAAATAGCTT---GATCAGCAACTctcaaatggaaaaatgaaacg-----tttttatga----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I

a score=-2503.000000
s ce10.chrX              4942096 17 + 17718866 ---------ATTCTGGTAGTGTTTCA
s caeRem4.Crem_Contig0   1813184 11 -  4500979 GCAGGGGGAAT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3194412 17 +  4147112 --------cattttgcca-tttttcg
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I
e caeSp111.Scaffold409    141965 19 -   201088 I

a score=10123.000000
s ce10.chrX              4942113 74 + 17718866 TAAATTCTGGTAGTGTTTCATAAATTCTTGTCGAAAACTGACAGGTATTCAGTTAATTAA-AATCCGGGT--AGTCT
s caeRem4.Crem_Contig0   1813195 63 -  4500979 TAAACTTTGTTAAGCCATTCTGAACACTTTCCGAGAC------------GAGTTAATTACAGAACGAAAG--AGTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    141984 64 -   201088 TAAACTTTGCTAAGCCTATCTGAACACTCCTCTCATC------------GAGTTAAttac-aaacaaaaaagagtct
i caeSp111.Scaffold409  I 19 C 0
s caePb3.Scfld02_0       3194439 64 +  4147112 TAAACTTTGCTAAGCCTATCTGAACACTCCACTCGGA------------GAGTTAATTAC-GAACGAAGGGTAGTCT
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17934   352715 1701 +   591668 I
e cb4.chrX              10280863 974 + 21540570 I

a score=-842.000000
s ce10.chrX              4942187 12 + 17718866 GACGGAAGTATA
s caeRem4.Crem_Contig0   1813258  9 -  4500979 GTTGGTTg---g
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold409    142048  8 -   201088 ATTGGTGG----
i caeSp111.Scaffold409  C 0 I 14
s caePb3.Scfld02_0       3194503 12 +  4147112 ATTGGTGGTAGG
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17934   354416 12 +   591668 GATGGCAGGAAG
i caeJap4.Scaffold17934 I 1701 C 0
e cb4.chrX              10280863 974 + 21540570 I

a score=60165.000000
s ce10.chrX              4942199 152 + 17718866 AAAAAGAC--CTCCC-----CCGTCACTCTCTTG-TGTT----------TTTTTTGTA----AAACGAATTCCAGGCATTCGATTAAACCTGGCT----------------GAGGCCGT-CCCCTGTC-TTTTGTCTTTCGTTTCCTTTT-CGCGTCTGTGCTTGTCTACGTCAC-AAATGA-GAAGCTTAATCT
s cb4.chrX              10281837 161 + 21540570 AAAGGGAT--CCCCT-----TTATTGCtttcctattttctctttttctgtgttttgta-ACAAAACGAATTCCAGGCATTCGATTAAACCTGG------------------------GCTTCCCTGTTGCTTTGCCTTTCGTTTGTCACT-TGTTGGCTCAC-CGTGTGTACGTCGAAAATGAGAAGCGTAATTT
i cb4.chrX              I 974 C 0
s caeRem4.Crem_Contig0   1813280 159 -  4500979 atagggaTGCCCCAT-----TTATTGCTTCCCTCTTCTC----------TGTCTTGTA-ACAAAACGAATTCTAGGCATTCGATTAAACCTGGTT----------------GAGGCAGTCTCCCTGTC-TTTTGTCTTTCGTTTGCCTCC-TCCTATTCTTC-CGTGTACGTCACGGAACTG-GAAGCTTGATTT
i caeRem4.Crem_Contig0  I 13 I 499
s caeSp111.Scaffold409    142070 143 -   201088 aatagggtcGCTCCTTC---TTATTGCT-------TCCC----------TGTTTTGTA-GCGAAACGAATTCCAGGCATTTGATTAAACCTGGCC----------------GAGGCAGT-CCCTCGTC-TTT-GTCTTTCGTTTTCCCCTCCGCT----------AGTACGTCAC-AAATTA-GAAGCGTGATTC
i caeSp111.Scaffold409  I 14 C 0
s caePb3.Scfld02_0       3194534 151 +  4147112 aagaggatcCCCCAT-----TTATTGCTTCGC---TCCT----------TGTTTTGTA-ACGAAACGAATTCCAGGCATTCGATTAAACCTGGTT----------------GAGGCAGTGCCCCTGTC-TTTCGTCTTTCGTTTGCCACT-CGCT----TGC-CGAGTACGTCAC-AAATTA-GAAGCGTGATTT
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   354428 162 +   591668 AAAGGGACCTCTTCTTTCCGTTATTCCTTG-----TGTC----------T-TCTTGTACGGAGAACGAATTCCAGGCATTCGATTAAACCTGGatgaggaggagaagaagagagGCGGCAGTCCT----CTTCGGCTTGC-TTTGCCGCT-TGC---------CTGGTACGTCAC-AAATTA-AAAGCGTGATTT
i caeJap4.Scaffold17934 C 0 I 1073

a score=-3604.000000
s ce10.chrX              4942351 10 + 17718866 TCAATAAAAC---
s cb4.chrX              10281998  7 + 21540570 ----TTAAGAC--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    142213 10 -   201088 ---GTAAAAACAC
i caeSp111.Scaffold409  C 0 I 630
s caePb3.Scfld02_0       3194685  9 +  4147112 ---GTATGGGGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=-1011.000000
s ce10.chrX              4942361 76 + 17718866 AGTTAACAAATCAAACTTTCAAAAAATCATCAGAATTTCTTGTTC--TTTGCACTTTCTTCAATTTT--CCGATGGTGTT
s cb4.chrX              10282005 62 + 21540570 --------------ACTCTAGAAAAtagatt----cttattttttggcttttaattttctggattcttcCTGACGgtatt
i cb4.chrX              C 0 I 728
s caePb3.Scfld02_0       3194694 59 +  4147112 -------AAAATAAAGGCCaaggaattgatt----ttttttcttc--ttttcaaatttttgtgttttggatG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=-5910.000000
s ce10.chrX              4942437 801 + 17718866  
s caePb3.Scfld02_0       3194753 775 +  4147112  
i caePb3.Scfld02_0      C 0 I 9
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282067 728 + 21540570 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=0.000000
s ce10.chrX              4943238 19 + 17718866 AAAAACTCCCTAATAGGGT
e caePb3.Scfld02_0       3195528  9 +  4147112 I
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282067 728 + 21540570 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=693.000000
s ce10.chrX              4943257 47 + 17718866 ATCTTGCTATTTTCTTCAACAAGGAAATCATTGAATTTTCACTAGTT
s caePb3.Scfld02_0       3195537 36 +  4147112 attttggcatttttt-----------atcttagcatttccagttatt
i caePb3.Scfld02_0      I 9 I 97
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282067 728 + 21540570 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=0.000000
s ce10.chrX              4943304 108 + 17718866 GGTACAAAAAGCTTACGGTAAAGCTTCAGTCTTGATTCACAGTGTTGTGTCATTTCGGCATTATGCACAAAAAATACTGTTTGGTATCAGTTTGCAACTGATTTTCCG
e caePb3.Scfld02_0       3195573  97 +  4147112 I
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282067 728 + 21540570 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=61.000000
s ce10.chrX              4943412 65 + 17718866 CTGAACCCTATTGGACTGTTA-------------------AAAATATCTAGATTTTCGTTTTATGAAAAACCAGC-AAATGCAGT
s caePb3.Scfld02_0       3195670 85 +  4147112 CTAAACCTTGATTATTTGTTATTATGGTAATTCAAAAGAGGAAATATTAGTGTTCTTGGGTTGTTAAGGATTGTCTGAACACTGT
i caePb3.Scfld02_0      I 97 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282067 728 + 21540570 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=-494.000000
s ce10.chrX              4943477 4 + 17718866 TATA--
s cb4.chrX              10282795 4 + 21540570 --TATG
i cb4.chrX              I 728 C 0
s caePb3.Scfld02_0       3195755 2 +  4147112 --TA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=0.000000
s ce10.chrX              4943481 1 + 17718866 A
e caePb3.Scfld02_0       3195757 0 +  4147112 C
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10282799 0 + 21540570 C
e caeSp111.Scaffold409    142223 630 -   201088 I
e caeRem4.Crem_Contig0   1813439 499 -  4500979 I

a score=113832.000000
s ce10.chrX              4943482 481 + 17718866  
s cb4.chrX              10282799 491 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1813938 437 -  4500979  
i caeRem4.Crem_Contig0  I 499 I 35
s caeSp111.Scaffold409    142853 445 -   201088  
i caeSp111.Scaffold409  I 630 C 0
s caePb3.Scfld02_0       3195757 463 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I

a score=-7452.000000
s ce10.chrX              4943963 15 + 17718866 AGAACTGAA------------CGCCAA---------
s cb4.chrX              10283292 30 + 21540570 -AAAGCGATTTTGCGCACTTGTTCTCATCAG-----
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold409    143298 12 -   201088 ---------------------CGCTCATAGA---GA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3196220 28 +  4147112 ---aatgat-----gGAGATGCACTTTTAGAAAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeRem4.Crem_Contig0   1814375 35 -  4500979 I

a score=86047.000000
s ce10.chrX              4943978 265 + 17718866 AAATCCAAAATCATCCGATCTAT---------CTTCTTTTGTTTCT-GATTC------------TTCTACACATCTCC-TCAAAAATAGACACGAAGGCGGCGTCAAAAAAGAAGGAAGAAAAAGGGCGAGAGCGTTAGTAGGG----CGCCCGAATTATTTGCATTTCAAG---AAAGGAGCCCTACCCG-AGCCTGT---TGGCTGTCAGTGACCCACGATGCTT-------GCCA--AAACT--TGTTGCAAAT--TGCGC------TGCTC----CGTTTTCGTT-----TTTGACTCGCCAAATTAGCTCTTC---TCTGTTTCG
s cb4.chrX              10283322 285 + 21540570 ATATTTAAACTTTAGAGCTATCT--------TTTTCTAGCGGCTTTCGATTC-----CAT----CAAAACGAATCAAACCCCAAAATAAAC-------------C-AGaaacgagaaaagaaaaggacgAAAGCGTTTGTAGGGACATTG-CCAAATTATTTGcgtttcaagaaaaaagaacccATGGC---ATCCCTT--------GTCACTGACCCACAATGTCATGCACCCGCCGAGAAACTTGTGTTGCAATT--TGCGTAACTGAAGCTcacaacgtttttttttcgtctttggCACACCAAATTAGCTCTTTCTGTGTGTTTCG
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1814410 283 -  4500979 AAATCTAAGATCAACGgatgtttctgtttcattttctgattttcttagATTCGCTTGCAT----CTAAACGTATCAAA-CCAAAAATAGACA--GAGGCGGCgtc-aaaaagaggaaagaaaaaggacgAAAACGTTAGTAGGA----CG-CCAAATTATTTGCGTTTCAAG--AAAAGAACCCATCACCATATCCTTT---TGGCCGTCACTGACCCACGATGCTTT------GCCGA-AAACT--TGTTGCAATT--TGTGT------AGCTCACAACGTTT----------CTTGGCTCACCAAATTAGCCCCTTC--TCTGTTTCG
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold409    143310 275 -   201088 TATTCTAAATCCGGTATCGCTTT---ttacttcttcttatttttctggattc-----aTT----CCAAGCACATCAAc-ccaaaaatagaa---aaggcGGCGTC-AGAaggaggaaagaaaaaagacgaaagcGTTAGTAGGA----CG-TCAAATTATTTGCGTTTCAAG---AAAGAACCCATCGCAC-AGCTTTTGGGGCCGTGACACTGACCCACGACGCTA-------GCCG--AAACTTGTATTGCAATT--TGCGT------AACTCACAACGTTTT---------CTCGGCTCAACAAATTAGCCCTTC---TGTGTTTCG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3196248 268 +  4147112 GAATCTGAGATCAACAACGcttt-------tgtttctgatttgCCTAGATTG-----CCTGGTATGAAGCGCATCAAA-CCAAAAATAGA---------TGCGTc-agaaggagg-aagaaaaaggacGAAGGCGTTAGTAGGA----CG-CCAAATTATTTGCGTTTCAAG---AAAGAACCCATCCTATGAGCCTTT---TTCTGGCCACTGACCCACGATGCTT-------GCCA--AAACTTGTGTTGCAATTTGTGTGT------GGCTCACAACGTTTT---------CTTGGCTCACCAAATTAGCCCTTC---TGTGTTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I

a score=-4737.000000
s ce10.chrX              4944243 40 + 17718866 ---------------CTTCTCCCCCGCTCCGTGCTGCCAAGACGCCGTTTCAAGA------------------
s caeRem4.Crem_Contig0   1814693 22 -  4500979 ---------------GTTgtccaagtttt------------------ttgagaga------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    143585 51 -   201088 CTTGTCCTCGCccaagttcttcttctctc------------------tttggAGA----AGAGTaagtagaag
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3196516 51 +  4147112 CTCACC----CCCAAGTTCTTCTTCGTTC------------------TATagagagagtagaagagttagaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10283607 35 + 21540570 I

a score=58204.000000
s ce10.chrX              4944283 213 + 17718866 GAAAACTAACACTTGGGCAAACAGGAAG-AATGGGTAGAAATGTAGAATCGACTGACACACACCAAAACTGATCCTTGACACTTTT-------------------GTGTATGGGT---CTTGAGAAAATGTGCAGAATTCCAATATT--CACAAGGGACCGTTTTTCTCATGGTGTTTTCCTGCTCTTTTCTGGAGGTGTTGAATTAC--AAACCATTT----TGAG-------TCATTGTGAAACATCAT
s cb4.chrX              10283642 194 + 21540570 GAAAACTAACACTTACACGGATAGGAAG-AATGGGTCGAATTGG-----------------GTGGGAACTGATCCTTGATACTTTTGACGAGCaaaaaaaCGGGAGAAGGAGGACAAACTTC-ACAAATG--------TCCATTTTT--TAC-AAGGACCAGTTCCC-----------------------AGGCAGATATCGTGTTACGAAAACCATTT----CTTCaccattattttttcgaaacatcaT
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1814715 167 -  4500979 gaaaactaACACTTAGGCAAACAGGAAG-AATGAGTTAAATTTG----------------CCTGGTAACTGATGCTTGATACTTTT-------------------GAGAGGGGTCAATTTTA-TGAAATG--------TCCAATTTT--CAC-ATGGACCGTTTCTC-----------------------AGGATGGTATCGGATTAC--AAACCATTC----TGAC-------TCATTTCGTAACATCAT
i caeRem4.Crem_Contig0  C 0 I 333
s caeSp111.Scaffold409    143636 171 -   201088 aaaaaccaagaCAGAGACAAACAGGAAGAAATGGGTAGAAATGG-----------------CTGAGAACTGATCCTTGATACTTTT-------------------GAGAATGGAC---TTCAGAGAAATG--------CCTTTTTCTCGCAC-AGGGACCGTTTCTC-----------------------ATGCATGTATTGGGTTac--aaaccattttttctgac-------tcaatttgaaacatcat
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3196567 166 +  4147112 gaAAACTAACACTTAGACAAACAGGAAG-AATGGGTAAAACTGG-----------------CAGAGAACTGATCCTTGATACTTTT-------------------GAGGATCGCC---TTTA-AGAAATG--------TCCATTTTTCACAC-AGGGACCGTTTCTC-----------------------ATGAAAGTATCAGGTTAC--AATCCATTTT---Cgac-------tcattttgaaacatcat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I

a score=-1288.000000
s ce10.chrX              4944496 29 + 17718866 ---TTTATTTCATTAGTTTTTCGGTTTTCAAA-
s cb4.chrX              10283836 30 + 21540570 ---TTATATTCTGCGtggtttggaaatttgaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    143807 23 -   201088 ccaccattttcatcatttt---------tgaa-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3196733 27 +  4147112 cctccattttcgtcatttttc-----tctgaa-
i caePb3.Scfld02_0      C 0 I 429
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeRem4.Crem_Contig0   1814882 333 -  4500979 I

a score=222.000000
s ce10.chrX              4944525 7 + 17718866 GTGAGGT
s cb4.chrX              10283866 2 + 21540570 -----at
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    143830 7 -   201088 gtaaAAT
i caeSp111.Scaffold409  C 0 I 270
e caePb3.Scfld02_0       3196760 429 +  4147112 I
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeRem4.Crem_Contig0   1814882 333 -  4500979 I

a score=-6619.000000
s ce10.chrX              4944532 873 + 17718866  
s cb4.chrX              10283868 543 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3196760 429 +  4147112 I
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e caeSp111.Scaffold409    143837 270 -   201088 I
e caeRem4.Crem_Contig0   1814882 333 -  4500979 I

a score=546.000000
s ce10.chrX              4945405 2 + 17718866 aa
s caeRem4.Crem_Contig0   1815215 2 -  4500979 aa
i caeRem4.Crem_Contig0  I 333 C 0
s caeSp111.Scaffold409    144107 2 -   201088 AA
i caeSp111.Scaffold409  I 270 C 0
e caePb3.Scfld02_0       3196760 429 +  4147112 I
e caeJap4.Scaffold17934   354590 1073 +   591668 I
e cb4.chrX              10284411 0 + 21540570 C

a score=6227.000000
s ce10.chrX              4945407 31 + 17718866 tttGCTTTATTACCA--CTCATTATTTAACAAG
s cb4.chrX              10284411 17 + 21540570 ----------CACAACCCCCATCATCC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1815217 25 -  4500979 tttgcTTCTTTTCAA--CCCATTATTA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    144109 25 -   201088 TTTGCTCCATTTCAA--TCCATTATTT------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197189 25 +  4147112 TCTGCTTCTTCTCAA--CCCATTATTT------
i caePb3.Scfld02_0      I 429 C 0
e caeJap4.Scaffold17934   354590 1073 +   591668 I

a score=129103.000000
s ce10.chrX              4945438 205 + 17718866 AAAAAACATCATTTTCATGTTATTGTTATTGAACTAGGTTGAAAAAG--GGGCAGTTTTCTCG---------CCATTC-CCCTCTTCGCGTTCGAGATTAGGTTACTG-ACACAGATAAACGTCGAGAAT-----GTGAGTGCTCATTCTTGT------------TCAACTCGTTTTTTTCTGGTTTGTTGCTCGTTTTTTATTTCAGCATT-------AAGCTCTTGTTGAATTTATGTTT--------
s cb4.chrX              10284428 209 + 21540570 AAATAACAGTATTCTA-TGTTATTGTCATTGAACTGCTTTCGAATGGGTCCGCAGTTTTCTCGTTGCTTCCCCCTTCCAGCCTCTTCGCGTTCGGGATTAGGTTACTGAACACAGAGAAACGTTGAGATGGGATGGCGAGTGCTTTTCCCCAG------------ACAacta---tttttctggtttcttgCTCTCCACGACATTTTTGTCACTAACATGAGCAC-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1815242 179 -  4500979 AAATaacatcattttcttgttattgTTATTGAACTACGTT-GAAAAAGGGGGCAGTTTTCTCG---------CCGTCC--CCTCTTTGCGTTCGGGATTAGGTTACTG-ACACAGATAAACGTCGAGGAG-----------GCTCATCCTTGT------------TCAACTA---TTTTTCTGGTTTGTTGCTCagctttgcttttttcaga-------aagcac-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    144134 184 -   201088 AAATaacatcattttcttgttattgTTATTGAACTACGTTGAAAAAG--GGGCAGTTTTCTCG---------CTGTCGCTCCTCTTCGCGTTCGGGATTAGGTTACTG-ACACAGATAAACGTCGAGGAG-----GCGAGTGCTCATCCTTGT------------CCAACTC---TTTTTCTGGtttgttgctcagctt--ttcCCCCCAAC-------AAGAAC-------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197214 190 +  4147112 AAATaacatcattttcttgttattgTTATTGAACTACGTTaaaaaaaaTGGGTAGTTTTCTCG-------CCCCGTCGACCCTCTTCGCGTTCGGGATTAGGTTACTG-ACACAGATAAACGTCGAGGAG-----GGGAGTGCTCATCCTTGT------------CCAACTC---TTTTTCTGGTTTGTTGctcttcttgcttttttccAGC-------GAGCac-------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   355663 208 +   591668 AAATAACATCATTTGCTTGTTATTGTTATTGAACTACGTACGAAGGGGGAGAGAGTCTTCTCG---------CATCCGTCCCTCTTCGCGTTCGGGATTAGGTTACTG-ACACAGATAAACGTCGAGGAG-----GCGAGTGCTCATCCTCGTCGTTTCGGGAGCCCAAGTC---TTTTTCTGGTTTGTGGCTCTTCTATCTTCTGCTCGCC-------TCAAAC-----------------TTATATTT
i caeJap4.Scaffold17934 I 1073 I 1034

a score=-17221.000000
s ce10.chrX              4945643 148 + 17718866 CGTGCTCTTTTGTAGTAGGCAAATATGACCATGATATTTTGAAGATCAGTAATTGTTTTTCTAATTTTTTTCTTTGAAGCTTTCTGACCAACTG-----------------TTGAAAAAAA-AACCATGTTTTTGCTAAAAAAAAA--ACAAAAATTTTTTGTAGATC----------
s cb4.chrX              10284637 105 + 21540570 --AGCGtttttttC----GCTCATCTGGTCAAGAAAT---------------CTGCTTGTCTGTTG----TATTAGGAG-CGTC---------------------------CTCACAGGAGGAGACAAGTT----------TAGTAACACACAAGTAATTTGATCATC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1815421  94 -  4500979 --agctctttttt------ctcatctggTCAAGAAAT---------------CCGCTTGTCCGATG----AAGACGACGACGTC---------------------------CTT--------CGTCAGGAT----------Tagta--acaaaaataatttgatcATC----------
i caeRem4.Crem_Contig0  C 0 I 161
s caeSp111.Scaffold409    144318  77 -   201088 --AACTCTGTTCT-------TCATCTGGTCAAGG-----------------------------------------------------------------------------CTTCGAAGAG-AGTCAAGAT----------TAGTA--AC--AAATAATTTGATCATCTTTCAATTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197404 124 +  4147112 --agctctttttt-------tcatctggtCAAGAAAT---------------CCGCTTGTCTGACG-------ACGACACCGTCAGGATTAGTAACAAATaatttgatcttttttgatgTT-ACTCTACGTACTTCT---GCAGTG--A---AGATGAT------ACCTT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   355871 1034 +   591668 I

a score=-11191.000000
s ce10.chrX              4945791 74 + 17718866 AAGGCGCATTTTGGGAC------------AATTGGTGCAC------TAATTTGGAAATACTTTA-CAACTTTGAAGCACCATAAAAAGTTTTT
s cb4.chrX              10284742 62 + 21540570 ---------TTTGCGGCTACATGTACTTGATTCTCTGCACGAGATATGAT---GAAGCGAAATACCTATTTTTC-------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    144395 47 -   201088 -----------------------------AGTCTGTGTAC------TAAT---GCAAAGAAATA-CTACCTCCAGA------GGAAGATTAT-
i caeSp111.Scaffold409  C 0 I 77
s caePb3.Scfld02_0       3197528 31 +  4147112 -------------------------------------------------T---GAAAGAGTATT-CAACGTTCAAA--------AAGGTTAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   355871 1034 +   591668 I
e caeRem4.Crem_Contig0   1815515 161 -  4500979 I

a score=-7008.000000
s ce10.chrX              4945865 124 + 17718866 TAAATGTTTTTATTGCCATTTCAAGTCTGTTGAATCAAATACTGATATTTTACTCACTTTAAATGaaaatcaatttccggcagcactgacaagtttccaaaattgaaaaatatttctaaaatta
s cb4.chrX              10284804  95 + 21540570 GAGATTATTCCAAggttttctcacttttctcacAT--AGTAGTAACGTCAAACGTGTTCTGCATA-----------------ATCTTGATTATTATGCAG---TGAAtcttccattt-------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3197559  64 +  4147112 --GA----------------------------------------ATGTGAAAC--GTTCTGCATAA---------CTTAGCGATGTTAATTAATATGCAG---TTTAACGTGGTTCTACA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   355871 1034 +   591668 I
e caeSp111.Scaffold409    144442  77 -   201088 I
e caeRem4.Crem_Contig0   1815515 161 -  4500979 I

a score=447.000000
s ce10.chrX              4945989 4 + 17718866 tctt
s cb4.chrX              10284899 4 + 21540570 tctc
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold409    144519 4 -   201088 TATT
i caeSp111.Scaffold409  I 77 C 0
e caePb3.Scfld02_0       3197623 0 +  4147112 C
e caeJap4.Scaffold17934   355871 1034 +   591668 I
e caeRem4.Crem_Contig0   1815515 161 -  4500979 I

a score=-10292.000000
s ce10.chrX              4945993 270 + 17718866 ttttttttgaaattt--------------tgaaccgccataaaacatttttaaagatAAAGTTTGGAGGTTGCAAAATGTTGAATCTTTTGTTGCATTTGTAAAAATCATACTAATTAT--AATACGCCAACTTTAGTAACAAA--ACTGCATTCAAACAAT---------------TCACTTATTTTATCTCCTTCTATTTTTGCTCACTTTG--CTTCTTTTCCCTGCCTAGCTAACAGAAAAGTGAACACGAGAAATGCTGAATTGAAAAAGGGGGAAT--TCCGACATCGTTCCTTCTTACTT
s cb4.chrX              10284915 153 + 21540570 CTTTTATTGGAATCCATCCATCGCAGTATCTAGC-----------------------AG---CTAACTGATATCG-------------------------------------TCATTTTTAGACATTC-----------ATGGA--AC-------AGGCAAC----------------------------------CTATTTATATGAATTTTT-----CTTGTGTCAACTTCTT---------ACAAACCAcga--------acaataaaaaaa---------------atcgttcCATTTTCcct
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1815676 203 -  4500979 CTTTTATTCAAATCCA-------------CGAGT-----------------------AGAGTCTAGATGATACCG-------------------------------------TCATTCT--AACATCCTAAGTTTAGTGATGGA--ACG------ACACAGCGGaatcctcttttctcttttttcttgttctttttctatttttgctcactttt--ttatttttgcccACCTCAC---------AATGAAcagga--------aaacgaaaagaaagaagat-atTTG-CATCGTTCCTCTTTCtat
i caeRem4.Crem_Contig0  I 161 C 0
s caeSp111.Scaffold409    144523 177 -   201088 CTGTTTTACGAATTC--------------TCAGCCGTC------------------TAGAGTCTAGATAAATCCA-------------------------------------TAATTCT--GACATTTGAAGTGTGTTACGGATCGtct------ggatttt---------------tt----------ctttcttatatCT--------TGTTGTTTATTTTTGGCCACCTCAC---------AGCGAACAGGA--------ATAcgacaaaaaaggaaat--ttcg-catcgttcttcattctaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197623 176 +  4147112 --TTTATTCAAATCC--------------TGA-------------------------AGAGTCTAGATGATACCA-------------------------------------TCATT--------TTTTAGATTCATTGATGGT--TCT------AGATATT---------------CTTTCTTGttgccttttttctattttcgctcacttttttttatttttgaatacctCAC---------AATGAacagga--------aaacgaaaaaaaagagaacgatgcg-aatttttttttgtt----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   355871 1034 +   591668 I

a score=49922.000000
s ce10.chrX              4946263  96 + 17718866 G---------AAAATGGAAATGAGAT-GGAGTGACGAATGCCATTAAAAGTAATCTGTGCTAAATGAC-AAATGGAAGTGTTACATAC------------TAAGATGCTCCTTGTC------TTC
s cb4.chrX              10285068 121 + 21540570 aactaaaaaaaaaagaaaaacggg----gAATGACGAATGTCATTAAATGTAATCTGTGCTAAATGACTGGTAGGAAGTCTTagattctttttctttcaggCAGTTGATTGTCTTTAACTCACtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1815879  96 -  4500979 a---aggaaaaaagaaaagatgat----gAGTGACGAATGACATTAAAAGTAATCTGTGTTAAATGAC---TAGGAAGTGTTACATAC------------GAAGAtgctcgtttt-------ctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    144700 103 -   201088 aa--gaagaaaaaggaaaaatgaga--cgAGTGACGAATGCCATTAAAAGTAATCTGCGTTAAATGACTGGAAGGAAGTGTTACATAC------------CAAGatgctcattttt------tct
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197799 100 +  4147112 -----gaagaaaaggaaggatgAGA--GGAATGACGAATGTCATTAGAAGTAATCTGTGTTAAATGACTGGAAGGAAGTGTTACATAC------------CAAGATGCtcgtcttc------ttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   356905  92 +   591668 ------ggaaatagaGAGGATGGTGTCGAGGTGACGAATGTCATTAGAAATAATCTGCGTTAAATGAC---TAGGAAGTGATACACAT---------------GCTCCTCAGTTTC---------
i caeJap4.Scaffold17934 I 1034 I 177

a score=-337.000000
s ce10.chrX              4946359 13 + 17718866 GTTTTCGTCTACT-------
s cb4.chrX              10285189 13 + 21540570 ccttttttcaatt-------
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   1815975 13 -  4500979 tttttcttcttct-------
i caeRem4.Crem_Contig0  C 0 I 306
s caeSp111.Scaffold409    144803 20 -   201088 cgtttatTCTCGTCAATACC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197899 17 +  4147112 ctcttcttcttct---tcct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I

a score=-3384.000000
s ce10.chrX              4946372 33 + 17718866 --------------------GATGGCGTTTGATGCTTGAG---CGATTTTTATATA-----------
s cb4.chrX              10285222 30 + 21540570 --------------------GATGACGATTGATATTTGAG---C---TCTTAGATa-----------
i cb4.chrX              I 20 I 52
s caeSp111.Scaffold409    144823 65 -   201088 GAAACGAAAACCTGTTGACGAATGAATTTTGATGTGTGAACGTCA--TAGTAGCTGAAATCTTCACA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197916 54 +  4147112 ataCCGAAAACCTGTT-----CTGGAGTTTGATGTATGAG---CA--TTGTAGCTTGATACTG---A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=-2954.000000
s ce10.chrX              4946405 39 + 17718866 TGTTTCATGTTATAAATATAATA--------CTGCTATGTCCTCTGA
s caeSp111.Scaffold409    144888 41 -   201088 TGCTTTTTGTtctagaaagaagaaagacgaTCCGCTG------CTGA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3197970  5 +  4147112 TACTT------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I
e cb4.chrX              10285252 52 + 21540570 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=2979.000000
s ce10.chrX              4946444 15 + 17718866 TTTTCACAGTTCACA
s cb4.chrX              10285304 15 + 21540570 tttttacaCTTCACA
i cb4.chrX              I 52 C 0
s caeSp111.Scaffold409    144929 15 -   201088 TTTTCACACTTGACA
i caeSp111.Scaffold409  C 0 I 112
s caePb3.Scfld02_0       3197975  8 +  4147112 TTTTCGCA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=1172.000000
s ce10.chrX              4946459 14 + 17718866 ACATTTTGATACTT
s cb4.chrX              10285319 14 + 21540570 AAGTTTCGAGATTT
i cb4.chrX              C 0 I 103
s caePb3.Scfld02_0       3197983  8 +  4147112 ------TGATATTT
i caePb3.Scfld02_0      C 0 I 17
e caeJap4.Scaffold17934   356997 177 +   591668 I
e caeSp111.Scaffold409    144944 112 -   201088 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=0.000000
s ce10.chrX              4946473 33 + 17718866 CAAAAATCGTTTGATTTGTAGAGATTTAATTTG
e caePb3.Scfld02_0       3197991 17 +  4147112 I
e caeJap4.Scaffold17934   356997 177 +   591668 I
e cb4.chrX              10285333 103 + 21540570 I
e caeSp111.Scaffold409    144944 112 -   201088 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=-5259.000000
s ce10.chrX              4946506 695 + 17718866  
s caePb3.Scfld02_0       3198008 464 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I
e cb4.chrX              10285333 103 + 21540570 I
e caeSp111.Scaffold409    144944 112 -   201088 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=-1780.000000
s ce10.chrX              4947201 1 + 17718866 --C
s cb4.chrX              10285436 1 + 21540570 -c-
i cb4.chrX              I 103 C 0
s caePb3.Scfld02_0       3198472 1 +  4147112 A--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I
e caeSp111.Scaffold409    144944 112 -   201088 I
e caeRem4.Crem_Contig0   1815988 306 -  4500979 I

a score=8184.000000
s ce10.chrX              4947202 21 + 17718866 CGCCGTTT-GCCA-ATGGGGCAA
s cb4.chrX              10285437 22 + 21540570 cGACATTTGGGAG-ATACGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1816294 21 -  4500979 CGACATTT-AGAG-ATACGACAA
i caeRem4.Crem_Contig0  I 306 C 0
s caeSp111.Scaffold409    145056 21 -   201088 CGACATTT-GGAG-ATATGGCAG
i caeSp111.Scaffold409  I 112 C 0
s caePb3.Scfld02_0       3198473 22 +  4147112 CGACATTT-GGCGAAAACGGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   356997 177 +   591668 I

a score=54433.000000
s ce10.chrX              4947223 182 + 17718866 GAAGATCAATTTAAC---TATGTACATTAATGCATTAGC---TAACTTTTTCCGGTGATGC---------------------------------------------------TGCACTCAATAAGATTAAATTTTGTCATT-T--CAATTT------GTTAAAGATGTCCTTTT--CCTTAAGAA-----TTTGCTATTTCTATAAATTTTCCGCTAGCTATTTCTTTATTTCTTCCAGTCTT-TCAAGAAAGTTT
s cb4.chrX              10285459 153 + 21540570 GATCATCAATTTAAC---TATGTACATTAATGCATTAGC---CAACTTTTTC------CGG---------------------------------------------------TGCACTCAATGAGATTAAATTTTGTCTTTCT--CATATC------CTGCAGGTCTTATCccaagtttttcagt-----ttttattatTCTACCA--------------ATTCTTCCCATTCACAGATTTTC-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1816315 166 -  4500979 GATCATCAATTTAAC---TATGTACATTAATGCATTAGC---AAACTTTTCC-GGTGATGC---------------------------------------------------TGCACTCAATAAGATtaaattttgtcatt-t--cacTTT------CCCCGGGCTCTACTTT---Tccttcaac-----ttttctt-ttccacAA-------------TGCTCTGCTCTTTTGTTAAGTTTC-TCTAAGAAGTTT
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold409    145077 163 -   201088 AATCATCAAGTTAAC---TATGTACATTAATGCATTAGC---CAACTTTTTCCGGTGAGGT---------------------------------------------------TGCACTCAATAAGATTAAATTttgtcatt-t--catttcattcgcCTCCAAGATTGTCc-----ttttctgatcaaacttttccatttctgca---------------gctcttcttctgctcacatcttt-------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3198495 153 +  4147112 GTTCATCAATTTAAC---TATGTACATTAATGCATTAAC---CAAGTTTTTCCGGTGATGC---------------------------------------------------TGCACTCAATAAgattagattttgtcatt-t--catttcatttctcttcaagattgtct-----ttccaagat-----ttttcttcttct--------------------tctttttcatttttcacgttc-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   357174 214 +   591668 GATAATCAATTTACTATGTATGTACATTAAAACATTAGCATACACCTTTTTCCGGtgatgctgatgctgatgctggtgctggtgctgatgctgatgccgaagctgatgcagatgcACTCAATGAGATTAAATTCTGTCATT-TTCCACATT------CTT-AAGATgtcct-----ttc-----------ctttcctttcct------------------ttcctttcactgattatatctttttctggaaaatct
i caeJap4.Scaffold17934 I 177 C 0

a score=-6156.000000
s ce10.chrX              4947405 33 + 17718866 -------TTTGTTAGTCTAGAATTGCTTTTCGATGTATTC
s cb4.chrX              10285612 14 + 21540570 -------TTTGTtata-tataa------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    145240 32 -   201088 -------tttcttcttttatgatt-tttttcatagaaGAG
i caeSp111.Scaffold409  C 0 I 9
s caePb3.Scfld02_0       3198648 33 +  4147112 -------tttGTTACATTCCGATTGttctgcagaaaaaag
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17934   357388 14 +   591668 ttttctatttgttt--------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1816481 28 -  4500979 I

a score=10465.000000
s ce10.chrX              4947438 161 + 17718866 TTCTGCAAAATTGAACGATTCTTGAGA---ACACTGTTGAATGCAAAAGTAAGAACACAAGAT-GTTCCATAGA--AATAAAATAAAATAATGAAAAGATTTTTT-----TCAGAGGT----TTTCTC-------------GTCCACTTCATCAAA---A--CTCGTTCTTTTCATAAACGTTGCTTTGT------------TTTT
s cb4.chrX              10285626 150 + 21540570 ------aaaataagaggat-----aaattttttttgc---------aaagaa-----AAAGTTCGTTCGGAAAA-------TATCAAATAGTGAGA----------------AGAGGT----CTGTTCTCCTGCTTTCTTTCTCTACTTCATCAAA---AACTTCGTTCTTTTCATCATGACAGATTTctgctcttcttct-tgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1816509 142 -  4500979 ttttccaaaatagaATAAT-----AAG---AAATTGC---------ACATAAGTTCGAAAGAT-GTTCAAGAGA-------AACCGAATAGTGAAA----------------GAAGGT----TTGCTC-------------CTCCACTTCATCAAA---A--CTCGttcttttcatcatcacagatttcttctcatctttc-ttat
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold409    145281 132 -   201088 TGTTTCAATat---ataat-----tga---aaact-----------ggaCAAGTTTGGAAgac-gttcaaaaaa--------ataaaatagtgAAA----------------AGAGGTCTTTCTGC-T-------------CTCCACTTCATCAAA---A--CTCGttcttttcatcagaata---ttct-----tctttggtatt
i caeSp111.Scaffold409  I 9 C 0
s caePb3.Scfld02_0       3198700 140 +  4147112 agtttcaatat--gaaaat-----tga---agattgc--------agaaaaagtttgaagaac-gTTCaata------------gaaatag----a----------------agaagtgGTCCTGCGC-------------CTCCACTTCATCAAAACTA--CTCGTTCTTTTCATCATCACAGATTTCTTGGCATCTTTCGTATT
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   357402 145 +   591668 atCTCCAGGTT---ATAAT-----GAG---------C---------GTACATGCTGGAATGAT-gcgcgaaaaataaaatataaaaaataagaaaaaaaacgttcaatGAATAGAGGT----CCCCCT-------------CTCCACTTCACCAAA---A--CTCGTTCTTTTCATCAT-------CTGTGCTCCgcttct-----
i caeJap4.Scaffold17934 C 0 I 1331

a score=-53253.000000
s ce10.chrX              4947599 171 + 17718866 TGCCTGT-GCAC-ATA-------CTATTGTTT--------------------TC-------------------------------------TTCATAAAGTTGGTAT---AACAAAAAAAAGTTCTAA-ACTT-----------------GTTATAAGTTGT-------------------------------------------------------------------------CACGCACTATTC-----------------------TTCTTACCCATTTCTATCACAAAATGTGCATT---TTATGAAGTTTGAAAATGAAAATCTTATTGATTC------TAGGAAACT---------------ATGCTCTGA-----
s cb4.chrX              10285776 280 + 21540570 tttttct-ggattttccaTGCCACCACTCCTC------TTCACAATCTCACATCTTCCAAACTTCCGTTCATCCAGAAGCTCATctgctctttcttttttgtcgtACTTGTTCTTATGA-AGAACTGTTAGCCGGAAAAGAGGGCTCACATTCATCATTCGGCTGGTC-----------ACGCACTTTAGGAAGCAGT-------------------------------------CACGGAATGTTC-----------------------TTTTTCC-----TTGGTTCTAGATTTT--GTACATTCCCGAAACG---ATTAGCAGTTTTTTCCAATTC------GATGTCATCAGCC-----AGG---AAACTGTGATCTAG
i cb4.chrX              C 0 I 119
s caeRem4.Crem_Contig0   1816651 237 -  4500979 tttctat-ccatttttt------ctcttcttc------ttcacaatctcacatc-------------------------------------ttccgaatttcCGCAC---ATCCAGTGAGAGATCTGCTCGTT---------------CTTTTTTGATGTACTTGTTCTT-----AGAAAATGACTGTAAGAAGAGATGA---------------AATTC---------------TATAGAACCAAC-----------------------ATTT--------CTGGTCACGCACTTTG-GTA---TCACGgaat-----ttcgttgttttttttggttctagaaaaatttaatCAGTTCTTAGAGA---AATGTTTGATTGAG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold409    145413 219 -   201088 tttctat-ccactatt-------ttcttcttcttcttcttcacaatctcacatc-------------------------------------ttcCAAATTTCCGCAC---ATC--TTGAGAGCTCCGTTGCTC-----------------TTTTCAA----------------------------------------------------------CGTACTTGTTCTTA------TTCAAAACTGTT---CAG---TTGAATAAAACTCACATCCCCTAACATTCGTCACGCATTTCG-------TCAGGCAAAT---------Aggctttttcattct------ctggTAACCAATTATTCGAAACACACTTTTTGA-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3198840 272 +  4147112 TTTCTATCCCActatt-------cttttcttc--------cccaATCTCACATC-------------------------------------TTCCATATTTCCGCAC---ATCTATCGAGAGCTCTGATGCTT-----------------TTTCTGATGTACTTGTtcttaagagaaaaaaaaacagtttgaaggATAAAAAACTGGAGGGCTTGCATTCTTCTTGTCACGCACTTTCTGAACTTCTTCCCGGATCTTGggt--------cttttccttttttctatttca-attcTG-ATT---TCTGGAGAAT---TCTTGAAAGCTCTATTA--CT------TATGCAGTtgatta----------actttttga-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I

a score=-26212.000000
s ce10.chrX              4947770  73 + 17718866 TCTTGTTTTT------------ATTTTATAATAAGGCTTTCCTATTGT-------------TCC----------------------------------AGATACGC-----TCCATATCGCTTGTAAGCTTTGATTT-------------------------------------------------------------------------------
s caeRem4.Crem_Contig0   1816894 182 -  4500979 -TTAGTTTCTAGTTACAccgttattttttattg----tttctggTGAGATATACTAGAGATATC------------------------GCTGTTTCATAAGAGAGC-----TCCAACATTCTTTTCGTTCCACCTCTGTGActcgtgtagatcaaaagaaaccaaaaactgattgtgtaattttgataaaaaagaagtgagGAGAAGACCTTTGtt
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409    145632 171 -   201088 -TTAACTTTCTAACAGA-----GGTTTagattaaa--tttttgattacttttagaaaaaatctccCTCAAAGGGGTACGGTACCTGGAAACgactgaagaaaaagcatTCTTTCATCGCACCTTTTCTTCcacattctt--ttcattt--------------cataacTTGAC-----------------aagagattgaaaaatgatattt----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3199112 110 +  4147112 -ttaGCTCTTGATTA--------CTTCTGAGTA------TTCAATCAT--------GAAATCTC----------------------------------AAGAATGTATTTTCCAATAATCCTGTGGATTGTGCTTTTT----------------------------GATTGTC-----------------AAGgttgtgatgaaaaaaattg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e cb4.chrX              10286056 119 + 21540570 I

a score=40312.000000
s ce10.chrX              4947843 257 + 17718866 ---------------------------CTTTCTGTT-----------------CTTCATTCCTTTTTGTTCATTTCTCAAATT---------CTTGAATGGTCTGTTCGTTTCAATATAATCCTACTCGATGACATCAG------TTTTTTTTCCGCGTTCACCTTTTG--------TTCCAACTCTCTTTT-TTC---GCTTTGTT-----TTTACAAT-ATTTTCA-------CTCGAAAATTGAACCAATTTCAGAACCATCACCATAATCCCACTTGCAAATAGCAGCAGTATTCTCAGAAATCTACACGGAGACAATTTTCTTATGGTGGGTTGa-a
s cb4.chrX              10286175 288 + 21540570 ---------------------------CTTTCTcct-ctgagaaaaaaaacacggtGACTCGTCATTCTTTTATTCTTACCCTGtttttttGCTAGATTGttctattgattttcatttaatcctctccacttttttcctgttcaatttttcgtttcattat-ttctttGAAGATTCACCTTGCTTattattt-cca---atttcaat-----accattttatttttcattctatttt---------------cttcagaattatCATCATAACGGCGACTGCAAATAGCAGCAGTATTCTGAGAAATCTACACGGCGACAACTTTCTTATGGTAAGTGGAA-
i cb4.chrX              I 119 I 95
s caeRem4.Crem_Contig0   1817076 229 -  4500979 ---------------------------ctttctctc-----------aaaaaccGTGACTCCTCTTCATGCTATTCTTTCAAC---------CGAGATTGTTCTATTGATTTCCATTTAATCCCTCACAAAggtctc--------tttttcatttcctctt-ctctgtt--------cctcacatatgtttt-ttaaagattttctt-----ctcatttt-tttttca-------tt---------------tttcagaattatcacCATAACCGCAACTTCA------------------AGAAATCTACACGGTGACAATTTTCTGATGGTAAGTGGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    145803 271 -   201088 ttgtgTAATAAAACAGACTATTGTTCTTTTCCTCCCTCTAGAAAGAACAAAACCGTGACTCTTCTTT---CTAgtctt-------------------ttgttttattgattttcatttaatcccccccAAAGGccgatt------tttctcatttccttttgctttgtt--------ccttttttccgtATTAATC---ATGCTTTTGAAAGATTATATG-ATCCCTA-------CT---------------TT-CAGAATCGTCACCATAATTGCGA------ATAGTAGTGCTATCCTAAGAAATCTACACGGCGACAATTTTCTTATGGTAAGTGGA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3199222 250 +  4147112 c----caagGGAAGAAgcttttgttcttttcctctc-----------aaaaaCTGTGACTCTTC---------GTCTT-------------------TTgttctattgattttcatttaatCCTTCACAAAGactgatt------ttttccatttccttttttttcgtt--------cctcTTCTCCGAATC-ATA---ATATTCTTTGTAGATCATATT-Tgtatta-------tt---------------ttccagaatcatcatcataattGCAA------ATAGCAGCAGTATCTTAAGAAATCTACACGGTGATAACTTTCTTATGGTGAGTGGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I

a score=6657.000000
s ce10.chrX              4948100 20 + 17718866 aatattttattttaattatt
s caeRem4.Crem_Contig0   1817305 20 -  4500979 ATCATTAGACTCCGATTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146074 20 -   201088 ATCATTagactttgattttt
i caeSp111.Scaffold409  C 0 I 234
s caePb3.Scfld02_0       3199472 20 +  4147112 ATCATTagactttgattttt
i caePb3.Scfld02_0      C 0 I 556
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e cb4.chrX              10286463 95 + 21540570 I

a score=91.000000
s ce10.chrX              4948120 1 + 17718866 a
s caeRem4.Crem_Contig0   1817325 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 241
e caePb3.Scfld02_0       3199492 556 +  4147112 I
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e cb4.chrX              10286463 95 + 21540570 I
e caeSp111.Scaffold409    146094 234 -   201088 I

a score=0.000000
s ce10.chrX              4948121 101 + 17718866 GTAACAGGAAGATAAGAAATATGTAAAAAATTTCTTCTATTAGTTTGAAAACTTGGGAATTGTTAGAGGGTCTTGTTATCATCTTACAATTAGTCCTAAAA
e caePb3.Scfld02_0       3199492 556 +  4147112 I
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e cb4.chrX              10286463  95 + 21540570 I
e caeSp111.Scaffold409    146094 234 -   201088 I
e caeRem4.Crem_Contig0   1817326 241 -  4500979 I

a score=-5526.000000
s ce10.chrX              4948222 962 + 17718866  
s cb4.chrX              10286558 748 + 21540570  
i cb4.chrX              I 95 C 0
e caePb3.Scfld02_0       3199492 556 +  4147112 I
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e caeSp111.Scaffold409    146094 234 -   201088 I
e caeRem4.Crem_Contig0   1817326 241 -  4500979 I

a score=-638.000000
s ce10.chrX              4949184 10 + 17718866 --TATTAGAACC--
s cb4.chrX              10287306 14 + 21540570 TATTTCAAAACAcc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3200048 10 +  4147112 --TATCAggctt--
i caePb3.Scfld02_0      I 556 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e caeSp111.Scaffold409    146094 234 -   201088 I
e caeRem4.Crem_Contig0   1817326 241 -  4500979 I

a score=674.000000
s ce10.chrX              4949194 38 + 17718866 -TTTTAGTTTGAAAACT-----------TTCGTTAA-TTTCCGTAATCCTT
s cb4.chrX              10287320 23 + 21540570 --------ttccagatt--------------------ttttgttaaacCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1817567 37 -  4500979 -TCTTACTTTAGAGATT-------------CATTACGTTCTCTTAAACCTT
i caeRem4.Crem_Contig0  I 241 C 0
s caePb3.Scfld02_0       3200058 50 +  4147112 ttttagttttttaaatcatGGCTCTAGCTACATTGT-TCTCCTTAAACCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e caeSp111.Scaffold409    146094 234 -   201088 I

a score=27990.000000
s ce10.chrX              4949232 259 + 17718866 TGTACTC---TGTTGTCTGATTT-TTTGCAGACG-GCTATTTTG-AAAATCTGAAGAAGGGTTTAGCAACCAT------------GGGAAGTTATTTCCAAAACCAGCACCACTCGTT----TTCAACTTA-----CTCCTCCGTCTTTTTCTGA---------------------CACGACGAGCGA----------------GAGGCCAGGTGAAACTTTTAAAATTTCCCCTATAATTGAGTGTGACCGTATACAACTTCTTCCCGGTTT----TTGAAATATTTTCCCAATGGGTTT---TATGAATGTTTTTAGTTAT------------GGAGAAA
s cb4.chrX              10287343 286 + 21540570 TGCACTTTCCTGTTTTCCGATTCCTTTGCAAACCAGTTCGTCAA-CAATTCTGAATAGCTCTTTGTAAAACATTCATTA-TACAGAAAAAGTTATTC-AAGGACC-AAACCACTCTTC-CCCTCAAACTAA-----CACCTCCGTATTTTCTTAGACAGCAGTAGTTTTTAAATTCCCAgaagtttcgtttttttttggaaacttagA-CAGGTGAAAC------ACT----ATTATAATTAGACATAACCTtgtcccttttttcttccgtt----------ttttagTTC-------------CACAAATGCatacaaaaat------------agaaaga
i cb4.chrX              C 0 I 81
s caeRem4.Crem_Contig0   1817604 268 -  4500979 TGCACTT---TGTTTTCCGACTCACTTGCAGACC-GCtagtttt-gaaatctgaagAGCCTCTTCTAAAACGCTCATCAGTGTGCAAGAAGTTATTT-CCAAACCAAAACTACTTTACTTCTTTCAACTTA-----CTCCTCCGTCTTTTCTTAG------------------------GAAATGTGGT--------------TTAGAGCAGgtgaaaccggaaaaat----aCGCTAATTGAGCCTGACCTTGTCCACTTTTGTTCCGGCTTCCAGCTATGTTTTCATTCTAA---------ACAAAAACGCATACACTTTT------------GAATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146328 274 -   201088 tgtactt---ttctttctgaaaccATTGCAGACC-ACTAGTTTG-TGAATCTGAAGAGCCATTCTTGAAACTCTCACCAGTGTGCAAAAAGCTATTT-CAAAACCGAAACCACTTTTC--------AAGTAACCCCCTCCTCCGT-CTTTCCTAA------------------------GAAATGCGG----------------GGAAACAggtgaaactg--aaaat----acgCTAATTGAGCATGACCTTGTCCATTTTTATTCCGgttt----ctagtttttcctcttcctgaATAGGCAAAAAgacttcatttcttttgactaactaacaaaaa---
i caeSp111.Scaffold409  I 234 C 0
s caePb3.Scfld02_0       3200108 254 +  4147112 TGCACtc---tgttttctgattttcctgCAGACC-actctttttctgaatctgaaGAGCC-TTCTTGAAACTCGCA---------GAAAAGTTATTTCCAAACCCAAAACCACTTTTC--------AGTTA-----CTCCTCCGTATTTTCCGAG------------------------GAATTGCTGC--------------TAGAAGCAggtgaaactggaaaaat----acgTTAATTGAACATAacctcttccaatttttctcagttttgc--TTATGTTTTCCAGCTGCTGCTTCG--AAACATATTCTGCTGATTTT------------AAAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I

a score=-4781.000000
s ce10.chrX              4949491 57 + 17718866 -------------------------TA--CAG-TGCAAAAT-TTTCCAAAATTATCTGAAAATTTTCGTGT-----ATTTCCTTTCCATTC
s caeRem4.Crem_Contig0   1817872 74 -  4500979 AGTAGACAGAAAGAAAAGACCTGAAAG--TGGTTGGCGTGT---TCCAGA------------CAACGGTGTGCCTAtccattcttcttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146602 59 -   201088 --taga---------------tgaaaa--caG-TGAAGAATGGGGCCAGA-------GACTCCAACGGTGT-----GTTGtctttcatttc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200362 59 +  4147112 --taga----------aatcctgaaaaatcgg-aGACGAAT---TCCAGA------------CAACGGTGT----Aattgtcttttctttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   357547 1331 +   591668 I
e cb4.chrX              10287629 81 + 21540570 I

a score=2074.000000
s ce10.chrX              4949548 5 + 17718866 AAGAC
s caeRem4.Crem_Contig0   1817946 5 -  4500979 aagTC
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold409    146661 5 -   201088 aactg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200421 5 +  4147112 aaGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   358878 5 +   591668 AAGTC
i caeJap4.Scaffold17934 I 1331 C 0
e cb4.chrX              10287629 81 + 21540570 I

a score=111355.000000
s ce10.chrX              4949553 154 + 17718866 ATCCGGAT-------------GTGTTTTTTTTTGTCAGCCGT-------TTAG-TTGATAG-TC---GTTTTCTGAATCAACACAGCGTCTCA----TCTCACATGATCATCCACTTTC-----TCATCTAT-----CTCCTCTCCTCATGCACTTTTTTCTCAATTTGCC---CCACAACC-------GAAACAACTCCTCT
s cb4.chrX              10287710 172 + 21540570 AACCGGAT-------------GTG----TTTTTGTCAGTCGGTGTGGATTCAA-ATGATAG-TCGTTGTCGTCTGAATCAACATAGCGTCTCA----TCTCACATGATCCACT-tttttcatcatcatcttctactgctcctccttttttgcacttttttctcaatttgccCCACCACACCC-------GAAACAACTcgtct
i cb4.chrX              I 81 I 12
s caeRem4.Crem_Contig0   1817955 149 -  4500979 AACCGGAT-------------GTG----TTTTTGTCAGTCGG-------TTGG-TTGATAG-TC---GTCGTCTGAATCAACACAGCGTCTCA----TCTCACATgatccact-ttttt-----tcatctgt-----CTCTTCTCGtcttgcacttttttctcaatttgcc---CCACAACC-------GAAACAACTCTTCT
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold409    146666 151 -   201088 AACCGGAC-------------GTG----TTTTTGTCAGTCCG-------TCGG-CTGATAG-TC---GTCGTCTGAATCAACACAACGTCTCA----TCTCACATgatccac--ttttt-----tcatctat--ctcctcctcttctcttgcacttttttctcaattcgcC---CTACAACC-------GAAACAACTCTTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200426 149 +  4147112 AACCGGAT-------------GTG----TTTTTGTCAGTCCT-------TCGGTTTGATAG-TC---GTCGTCTGAATCAACACAGCGTCTCA----TCTCACATgatccact-ttttt-----tcatctgt-----cTCTTCTCCtcttgcacttttttctcaatttgcc---CCACAACC-------GAAACAACTCTTC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   358883 166 +   591668 AACCGGATGCGAAGATACGACGTG----TTTTTGGCAGTCGG-------ATGGGTGGATGGATA---GTGGTGTGAATCAACACAACGTCTCATCCGTCTCACATGATCCAcc-ccttc--------ttttt-----ctttgcaCTTCTT----TCTCTCCTCAATTCGCC---TTAGAACCAACTCATGAAAAACGTCTT--
i caeJap4.Scaffold17934 C 0 C 0

a score=7190.000000
s ce10.chrX              4949707 19 + 17718866 CCACAGCAAGCTCACCAAA
s caeRem4.Crem_Contig0   1818104 13 -  4500979 ------CTTGCTCACCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146817 13 -   201088 ------CTTGCTCACCAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200575 13 +  4147112 ------CTTGCTCACCAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   359049 10 +   591668 ---------GCTCACCAAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10287882 12 + 21540570 I

a score=72948.000000
s ce10.chrX              4949726 111 + 17718866 TAATCCGGGGACA-TCGTCTTCTGGTTG------CGCACCAAAAAATGCGTGTTTTCCGTTTTT----TCGCTTCATAA----------------ACACCATTC-GGAACCAATTGCTCTTCGTGACACC-------CTACCCACA
s cb4.chrX              10287894 133 + 21540570 tacTCAGAGGAGGTTCCTCTTGTGGTTGGAGCTCCGCCT--GAAAATGCgtgttttccgttttt--tctcgcttcataaacacacacacacacacacaccatTCGGGAACCGTTTCCTCTTCATGACA---------TTTCTTACA
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1818117 113 -  4500979 TAATCCGGGGAGA-GCCTCTTCTGGTTG------CGCC---AAAAATGCgtgtttccctttttttctctcgctTCATAA----------------ACACCATTC-GGAACCGTTTCCTCTTCATGACACC------CCTACTCACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146830 112 -   201088 TAATCC-GGGAGA-GCCTCTTGTGGTTA------CGCC----AAAACGCgtgttttccgttttt--tctcgCTTCATAA----------------ACACTATTC-GGAACCGTTTCCTCTTCATGACACT---CTCCCTACCCACA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200588 116 +  4147112 TAATCCGGGGAGA-GCCTCTTGTGGTTG------CGCC----AAAATGcgtgttttccgttttt--tctcgCTTCATAA----------------ACACCATTC-GGAACCGTTTCCTCTTCATGACACCCCACCCACTACTCATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   359059 102 +   591668 TGATccaaggggg-ggg----ggggttt------tgCC----CAAATTCGTGTTTTCCGCTTCT-----CGCTTCATAA----------------ACACCATTC-GGGACCACTTCCTGTCCGCCAACCT-------CCACTCACA
i caeJap4.Scaffold17934 C 0 I 183

a score=-9462.000000
s ce10.chrX              4949837 149 + 17718866 ACTCACTGG----GAGTTGGAGCAAAAGTAGG-GCAAAATCATTAAACATAGAACATGAACACAACACTATTCTCGATAATTGATGAAAAACAATT--GAAG-------------AGTTGTTCAAA---------GAAAAGAAA----------ACTGAAAGC--TTCC---TAAAAACA---------TCATATTGGGG---AC
s cb4.chrX              10288027 159 + 21540570 Ctttt--------------------taaaaag-gaaaaaa----------aggattgAGAAGGAGCATGAATATCgaaaatccctaaaaaacaatc--aaag-------------agttgttcaaaatgaaatgggaaaagaaaaaattgggtgaaaaaaagcaatttttgacaacagccggaaaaaaaagaagagggggGACGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1818230 142 -  4500979 CTTTTAATACG--AGGTTGAATGAACACATgg-ggaatgg----------aaaaatacggggggatacaaaaatctagaatgcc--aaaaacaattgaaaaa-------------agttttt-------------gaatagaga----------aaaaaaggcaATTTTTTGTGACAGCC---------AAAAGAGTGGG---AC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    146942 149 -   201088 CTCTTCGGATACTgagatgaatgaatgaaaag-ggaAGGC-----------AACCCCGGGACCCATACAAAAGTCTAGAAGCCT--AAAAACAATT--GGAGAGAGACATAGAGAGTTTGTTCA-----------------AAC----------AGAAATggcatttcttt-tgaaaaca---------tcgaGAGTGGG---AC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200704 128 +  4147112 CTTTTGAGATG--AAGTTGAACGGACAAGAGgtggaaaac-------gagaaaattcgga----atacaaaaattcaggaagca--aaaaacaatt--ggag-------------gattgtccaa----------aaaaggaaa----------aaaggaggcAACTCC------------------------AAGTGGG---AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359161 183 +   591668 I

a score=273859.000000
s ce10.chrX              4949986 403 + 17718866 GCAGTTTATTTTGGAGTTTTTGCGTACATATATAAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGGTTGAGCTGTGctccctctctctctctctctttccttctttgcctctGAAAGCACAT---GGGCCCCGCCTACTTAGCCGCA-GCTC------TAAGCCTTACGAGGGCGAGAATCACTCGGACGAGTAGAATTGCCAGAT-ACCTC---------------------TGCTTCCCTAATTCGTGTT----GAACC-TTTTAT----A----TATCGAGTTGACAGTACTATACGTACAAAACTAA---TATTTTGATAGTCCAATGACTACAACCTGACATCTTGCTTCATGGCTATTTGGTGG---TGGTTTGAAATTTTGTCTGCTAAAAGTGATTTTGAAAGTATTATGGCTTGGAGCGTGTTTATTTACATCCAGGTA
s cb4.chrX              10288186 387 + 21540570 GCAGTTTATTTTGGAG--TTTGCGTACATATATAAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGGTTGAGCTGTGCTC----------------------TCTTTGCCTCTGAAAGCACATGCGGTGCCACGCCCACTTAGTCGCA-GCTCTTCATATAGGGCTTACGAGAGCGAGAATCACTCGAAGAGGCAGAGTTGTGTGAGATTCTC-----------TCCTCCTTCGCGCCTTCT--ATCCCTTCTTAGTGCCTT-CTCAATT---A----TTGCAACTTGATAATCTT--------ACCGCTGATATTA----------CTGATGACCACTTCCTGACAATTTGCCACATGGCTATTCGgtgg---aaatctgaaagtttgacTAGAgcaaaagattttgaaagtatCATGGCGTGGGGTGTTTTCATTTATATCCAGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1818372 375 -  4500979 GCAGTTTATTTTGGAG--TTTGCGTACATATATAAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGGTTGAGCTGTGCTC----------------------TCTTTGCCTCTGAAAGCACAt---gggctccgcccacttagtCGCA-GCTCTTCGTGTAAGGCTTACGAGAGCGAGAATCACTCGGGACGGCAGAGTTGTCAGAT-TCCTC-----------TTCTCTTTAGTGCTTTCTTAATCTCTGTT------ATT-TGTAATTCTGA----TTGCAACTTTATGA------------GAAACTGA---TA----------CTAATGACTACTTCCTGACATCTTGCCACATGGCTATTCATTGG---ACATCTGAAAgttcaactagaaaaaaagaaattgaaagtaTCATGGCGTGGAGTGTGTTCATATACATCCAGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    147091 390 -   201088 GGCGCTTATTTTGGAG--TTTACGTACATATATAAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGGTTGAGCTGTGCTC----------------------TCTTTGCCTCTGAAAGCACAT---GGGCCCCGCCCACTTAGTCGCA-GCTCGTCGTGTAAGGCTTACGAGAGCGAGAATCACTCGGGACGGCAGAGTTGTCAGAT-TCCCCCCTACTCTCTTTTCTGCTTAGTGCCTTTTTAATCTCTGTT------ATTCTGTAATTCTGA-CACCAGAAAGTTGATAA------------GAAAGTGA---TA----------CTGATGACTACTTCCTGACATCTTGCCACATGGCGATTCAGTGG---ACATTTGAAACTACAATTAGAAACAAAGATTTTAAGAATATCATGGCCTGGAGTGTTTTCATTTACATTCAGGTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3200832 376 +  4147112 GCAGTTTATTTTGGAG--TTTGCGTACATATATAAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGGTTGAGCTGTGCTC----------------------TCTTTGCCTCTGAAAGCACAT---GGGCCCCGCCCACTTAGTCGCAGGCTCTTCGTGTAAGGCTTACGAGAGCGAGAATCACTCGGGACGGCAGAGTTGTCAGAT-TCTCCCC---------TCCTGCTTAGTGCCTTCTTAATCTCTGTT------ATT-TGTAATTCTGATTATTGCCAACTTGATAA------------GAAACTCA---TA----------CTAATGACTACTTCCTGACATTTTGCCACATGGC------ttgg---aaattcagaagttcAATTAGagacaaaagttttgaaagtattATGGCGTGGAGTGTATTTATTTACATTCAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   359344 343 +   591668 TCAGTTTATTTGGGAG--TTTGCGTACATATATGAAATGTGTGATTGCAAGCGTAAAATATATTATAATGGATTGAGCTGCGCTC----------------------TCTTTGCCTCTGAAAGCAcat----ggctccgcccactatgTCGCA-GCTTTTCGTGTAACGCTTAGAAGAGC-----TTGCTCGG-ATGGCAGCGTTTTGAGAT-TCT-------------TTTCGTCTGGTGCCT----AATCTCTGAG------AAT-TCTGAT----A------------TGATAT------------GCGACTTA---TA-------------------ATTTCCTGACGA-TTGCTACATGGATAGCCGATGGTGTTCACCGAAAAAGTTGAATCAAGAATTGGAATTTGCAAATATCATGGCTTGGAGCGTGTTTATTTACATCCAGGTA
i caeJap4.Scaffold17934 I 183 I 1014

a score=16377.000000
s ce10.chrX              4950389 141 + 17718866 AGA---------------------------------GTTCTAATAGTTCTCAGGAAAAATT--CAAAATC--TCGGAGGTTCCTAGAAAAATTGTGGTGATTTCTGGCCAGTCTGTTTTTCGCAATTCCAAGCTTTGGCTGACCT--------AGTTCCGGTTCTAAA-TTGCAAAACGA---GTGATGT
s cb4.chrX              10288573 121 + 21540570 AGA------TTTCAAATACAAAGa------------acttttacatttttc-----aaattctcaaagta-----------AGTAGAAACATT----TGATTTCCGACCAGTCTG---------------------GGCTTTCTT------GGAGTTCCGGTTTAAAAGTTGCAAAA-AA---GTGATGT
i cb4.chrX              C 0 I 246
s caeRem4.Crem_Contig0   1818747 173 -  4500979 AGAAACATtcttagaattcaaaaacca--aacttCGACTTCCccttttctttaaaaaaacttccaaaacacCTCCAAAA-TAGTGGAAACATT----TGATTTTCGACCAGTCTGTTCT--------TCGCAACTCGGCTGCCCTCCTTGCGGAGTTCCGGTacgaaa-ttgcaaaa-aaggcgtgatgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    147481 145 -   201088 AG----------GAGAAACGTGAATCAAAGATCTTTAATTC--ACTTC---------------CAAAATC--TCCAGAA-ACCTGGAAACATT----TGATTCTTGACCAGTCTGTTCC------CTTCAAAATCTAGGTGACTTGGTCGCCCAGTTCCGGTACAAAA-TTGCAAGA-GA---ATGATGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3201208 161 +  4147112 AGACATAC-TTCAAAATTCATAgatcattattttttacttccaacttcttatttcaaaact--caaaaac--tccaaaa-tacTGGAAACATT----TGATTTTCGACCAGTCTGTTCT--------------TCTAGGTGACTTGGTCGCGCAGTTCCGGtatgaaa-ttgcaaaa-aa---gtgGTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I

a score=-654.000000
s ce10.chrX              4950530 3 + 17718866 TTC-
s caeRem4.Crem_Contig0   1818920 2 -  4500979 -tt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    147626 3 -   201088 -TTC
i caeSp111.Scaffold409  C 0 I 270
s caePb3.Scfld02_0       3201369 2 +  4147112 -TT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10288694 246 + 21540570 I

a score=-290.000000
s ce10.chrX              4950533 146 + 17718866 TGTTTCTGTTTCAAAGAGCATT-------ATTTTTTCTTTAATGTTGT-------------------ACATAGTAACTTTTTCTTGCTTTCCGCCTGAGCTTACTCATTTTTAGCTAATTAGGCTATTGGATCATCTGCTTT-----CTCAGGTTTCATCTGAAAAATA------ATAAGACG---
s caeRem4.Crem_Contig0   1818922 144 -  4500979 -----------aaaaaatgctTAGA----ACCTTTGTTGCAATAGTCT------AAAGCTAAGAAGATAGTAGTGGACCTTT------TTTCCTCTCAGC-----TGTGTCTGTCTAATTA-GCGAAAGGATCATCGGATCTTCTGACtcaagtttcagttttcaaatt------ataatATG---
i caeRem4.Crem_Contig0  C 0 I 130
s caePb3.Scfld02_0       3201371 180 +  4147112 TAGTTCTATTCAGAACAATCTCAAataattcttttgaaacaaaaattttgaaagaaaaaaaagtaaaaaataggGAGTTTTCAGTAGATTAACCCTGGTG-----CATATTTTGCTAATTA-GATATCGGATCCTCTGATTCTCTGCCTTAGGTTTCAGTTTTCGattcttcaaaataatatGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10288694 246 + 21540570 I
e caeSp111.Scaffold409    147629 270 -   201088 I

a score=-96.000000
s ce10.chrX              4950679 90 + 17718866 A---CACATTTTTTTGTTGAAGATTT---TTGGTCAATGAGGT--TTCTTAAAACATAAATATTTGAAAAACAAAAACACAAAACTTATTTCAGCATT
s caePb3.Scfld02_0       3201551 98 +  4147112 AATGAACTTCgatcatttgaaaagttatgtTAATCTTGAAAGTAATCCATCCAACCAAAACACAGAAGATGCAAAACCACGAACGttctttgctcatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10288694 246 + 21540570 I
e caeSp111.Scaffold409    147629 270 -   201088 I
e caeRem4.Crem_Contig0   1819066 130 -  4500979 I

a score=0.000000
s ce10.chrX              4950769 561 + 17718866  
e caePb3.Scfld02_0       3201649   0 +  4147112 C
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10288694 246 + 21540570 I
e caeSp111.Scaffold409    147629 270 -   201088 I
e caeRem4.Crem_Contig0   1819066 130 -  4500979 I

a score=106.000000
s ce10.chrX              4951330 6 + 17718866 CGTTTG
s caeSp111.Scaffold409    147899 6 -   201088 cacttt
i caeSp111.Scaffold409  I 270 C 0
e caePb3.Scfld02_0       3201649 0 +  4147112 C
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10288694 246 + 21540570 I
e caeRem4.Crem_Contig0   1819066 130 -  4500979 I

a score=551.000000
s ce10.chrX              4951336 4 + 17718866 TAAG
s cb4.chrX              10288940 4 + 21540570 taaa
i cb4.chrX              I 246 C 0
s caeSp111.Scaffold409    147905 4 -   201088 taat
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3201649 0 +  4147112 C
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e caeRem4.Crem_Contig0   1819066 130 -  4500979 I

a score=57980.000000
s ce10.chrX              4951340 203 + 17718866 -TTTTCAATTTCCTGTTCCCAA--AAAGGTA--CTTCTCAGAAACAATTAGTACT---------TCAACTAA-------CTC------GCCTTTTTTGACATCTTGAAAT-------TGCGTGGAGCAA-------ACGATGAGGTAGGAATGGGTGAATGTGTGACGCGAGT--CCACTTCC--TGTGGAGGCACTAGAAACGATTTCGATTCC--AATTTGTGTTGTG-TGCTGTTGGTGCTCTCTCTA
s cb4.chrX              10288944 197 + 21540570 ttttcaatttggtttttcttg---tttggTG--CATCTCGGAaacaattagt--tttttttttctgaaatga-------cTTCAAAGTTCCTTAAAGAACGCCCTcggaa-------aactttcaaaaa-g-----aagatgaG----------------GTGTGACGCTAGTCGCCACTTCCTGTGT---GCCACTGGAAacaatttcgatttctgaatttgtgttGTG-TGTG-------CCCTCTCAG
i cb4.chrX              C 0 I 72
s caeRem4.Crem_Contig0   1819196 213 -  4500979 tttcaaacttcactGTTcccgaa-aataatt--tttccggGAAACAATTAGC--T---------GGAAATGA-------CTCGAAAGCGTCTTTTTGAACGTTCTCAAAATTGCGGTGGCGGTGAAGAA-GTGG-AAGGATGAGGTATGAATGGGTGAATGTGTGACGCGAGC--CTACTTCC--TGT---GCCACTGGAAACGATTTCGATTCC--AATTTGTGTTGTG-CACT-----GCCCCTCTCTA
i caeRem4.Crem_Contig0  I 130 C 0
s caeSp111.Scaffold409    147909 196 -   201088 -tttt--ctcttctatttcggaaaagaaaca--tttctcGGAAATAATTAGT--T---------TGAGTTGA-------GTTGAAAGTGCCTT-TTGAACGCCCTCAAAA-----------------AATGCGACTAGGATGAGGTATGAATGGGTGAATGTGTGACGCGAGC--CCACTTCC--TGC---GCCACTGGAAACGATTTCGATTCC--AATTTGTGTTGTGCTGGC-----TAGCCTCTCTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3201649 207 +  4147112 -ttttaattttgctgttccaaaattgaaacacTTTTCTTGGAAACAATTAGTGCT---------TGACTCAACACTAACTTCCAAAGTACCTT-TTGAACGCCCTCTAAA-----------------AA-GCAGCAAGGATGAGGTATGAATGGGTGAATGTGTGACGCGAGC--CCACTTCC--TGT---GCCACTGGAAACGATTTCGATTCC--AATTTGTGTTGTG-TGGC-----TAGACTCTCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I

a score=-2200.000000
s ce10.chrX              4951543 86 + 17718866 ----ACATTCACCTTATCCTTCTTCT-TTTCTGCTCCAAACTCTTTTCACTTTTCTCGCACTTA-CTTTTTGTCCTCATCTCCCTACACTCC
s caeRem4.Crem_Contig0   1819409 71 -  4500979 ACGCACATACATC-------TTCTCG-TTTTAGCG-TAGactc------cttttttttcacttt-ctttttcattacACTTCAAGAC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148105 65 -   201088 ----ACACAtatc------cttctct-ttttcact-----ctT------CTTTCGTCTCCTCTTACTTTTCCATCTCATTCCCAGCC-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3201856 57 +  4147112 ----GTTTACCAC------TCTGTCTCTTTTCAC-------------------Catctcgtctt-ctttttcaactcatttCTAGCC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I
e cb4.chrX              10289141 72 + 21540570 I

a score=-1675.000000
s ce10.chrX              4951629 42 + 17718866 ATACCGTC---------TACGTCCACTTCCTAATTAAAAG----GCTA---------------CGCGCGT
s cb4.chrX              10289213 44 + 21540570 ATCC------------------CGTCTTCCCAATTAAAAG-TGGGACT-------TTTTCCTGTGCGCGT
i cb4.chrX              I 72 C 0
s caeRem4.Crem_Contig0   1819480 45 -  4500979 ATACTGTCTG-------TGAGACGTCCTTCCAATTAAAGT-TGGGC-----------------GGCGCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148170 52 -   201088 GTACTGtctttttctgatgagaAGCACT--CAATTAAAAC-TAGGGGC---------------GGCGCGT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3201913 62 +  4147112 ATACCGTCGTT------TGAGACGTCCT--CAATTAAGACTTAGGGGCCACTCGGCACACACGTACGCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   359687 1014 +   591668 I

a score=6194.000000
s ce10.chrX              4951671 68 + 17718866 ---GGGATAATAAGAGAT-------GAGGTCCAATTAAAGAAAGAAAG--ACGGCG---------CGTTTCGCAAGTGAAGC--TCGTTCC
s cb4.chrX              10289257 65 + 21540570 ---GGGATaataagagagagagagaaaggtcCAATTAGAATTAG---------------------TTTTTCACGTGTGCAGC--CCATCTC
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   1819525 60 -  4500979 ---GGGATAATAAGCGAT-------GAGGTCCAATTAGATAGAGA-----AGGACG-------TCTTTCTCACACGTG-GGC--T------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148222 57 -   201088 ---GGGATAATAAG-------------AGTCCAATTAGATATCGAAAATGAGGACG---------CGTTTCGCACGTGAAGA---------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3201975 62 +  4147112 ---GGGATAATAAGCGAT-------GAGGTccaattagaaattgaaa---aggacG---------CCTCTCGCACGTGGAGATA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   360701 55 +   591668 GGGAGAATAATAAGCTAG---------CGCCCAATTAGAAACG-------AGGACggcttattttcttttt--------------------
i caeJap4.Scaffold17934 I 1014 C 0

a score=-11874.000000
s ce10.chrX              4951739 40 + 17718866 TATCCTGAAGCGCAAACATTCCCAACTTTCAAC--AATTTAA----------
s caeRem4.Crem_Contig0   1819585 29 -  4500979 CATACTG------AAGCAATTCTAAACTTATTCGA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148279 19 -   201088 --------------ACCAATTCTAACTACTCTC-------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3202037 22 +  4147112 -----TA------GACTAGAAgcaatttttctc-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   360756 36 +   591668 -------tatttcacgtattttccaccgctctc---------ccaataattt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10289322 52 + 21540570 I

a score=387772.000000
s ce10.chrX              4951779 498 + 17718866  
s cb4.chrX              10289374 498 + 21540570  
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   1819614 496 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148298 480 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3202059 487 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   360792 510 +   591668  
i caeJap4.Scaffold17934 C 0 I 46

a score=21999.000000
s ce10.chrX              4952277 39 + 17718866 GAAAGATGAGATTAGACTTGAAAATAGGAAGTGATGTGT
s cb4.chrX              10289872 39 + 21540570 GGAAAACAGGATTAGACCTTGAAAACGGAAATGATGTGT
i cb4.chrX              C 0 I 158
s caeRem4.Crem_Contig0   1820110 39 -  4500979 GGAAGATAGGATTAGACTTTAAAACCGGAAGTGATGTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148778 37 -   201088 AGAAGATAGGATTAGTCATTAAAACAGGAAGTGATGC--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3202546 37 +  4147112 GGAAGATAGGATTAGACTTTAGAACCGGAAGTGATGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I

a score=4916.000000
s ce10.chrX              4952316 30 + 17718866 GTATAGATATGTCAAAATAGCAACATTTTC
s caeRem4.Crem_Contig0   1820149 28 -  4500979 GGATAG-GCTCTCAGAATGGAAACATTTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148815 30 -   201088 GAAAAGAGCTCTTAGAATAGTGACATTATC
i caeSp111.Scaffold409  C 0 I 141
s caePb3.Scfld02_0       3202583 30 +  4147112 GTATAAAGCTTTTAGAATGACAACcttttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I
e cb4.chrX              10289911 158 + 21540570 I

a score=-414.000000
s ce10.chrX              4952346 23 + 17718866 GGGAAGTGCAATTGGTCAACTTT
s caeRem4.Crem_Contig0   1820177 23 -  4500979 GGAAAACGCTTTTGATTAAGTTT
i caeRem4.Crem_Contig0  C 0 I 189
s caePb3.Scfld02_0       3202613  9 +  4147112 ggaaa---cttt-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I
e cb4.chrX              10289911 158 + 21540570 I
e caeSp111.Scaffold409    148845 141 -   201088 I

a score=-3727.000000
s ce10.chrX              4952369 511 + 17718866  
s caePb3.Scfld02_0       3202622 365 +  4147112  
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold17934   361302  46 +   591668 I
e cb4.chrX              10289911 158 + 21540570 I
e caeSp111.Scaffold409    148845 141 -   201088 I
e caeRem4.Crem_Contig0   1820200 189 -  4500979 I

a score=0.000000
s ce10.chrX              4952880 44 + 17718866 aaattttgaaaccccataagaaatttttgtgaaaatgttttaca
e caePb3.Scfld02_0       3202987 38 +  4147112 I
e caeJap4.Scaffold17934   361302 46 +   591668 I
e cb4.chrX              10289911 158 + 21540570 I
e caeSp111.Scaffold409    148845 141 -   201088 I
e caeRem4.Crem_Contig0   1820200 189 -  4500979 I

a score=-382.000000
s ce10.chrX              4952924 90 + 17718866 gtttcacaaaatatcgtttgaaca-tattatagtctacaaaatcaaaaatcccagaaccgAAACCCATTTTTTGATTGCCAGTATCATCAA
s caePb3.Scfld02_0       3203025 64 +  4147112 TCTTTACTCGATACCATTTGAACCCTATCAGTGTTTTCAATCTC------------------------CCTCTACTTTCCA---CCcacaa
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I
e cb4.chrX              10289911 158 + 21540570 I
e caeSp111.Scaffold409    148845 141 -   201088 I
e caeRem4.Crem_Contig0   1820200 189 -  4500979 I

a score=292.000000
s ce10.chrX              4953014 6 + 17718866 TTTTTT-
s cb4.chrX              10290069 6 + 21540570 tttttt-
i cb4.chrX              I 158 C 0
s caePb3.Scfld02_0       3203089 6 +  4147112 -tttctg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I
e caeSp111.Scaffold409    148845 141 -   201088 I
e caeRem4.Crem_Contig0   1820200 189 -  4500979 I

a score=488.000000
s ce10.chrX              4953020 10 + 17718866 ATATTTCTTA
s cb4.chrX              10290075 10 + 21540570 ccaatttcaa
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold409    148986 10 -   201088 atgtttttta
i caeSp111.Scaffold409  I 141 C 0
e caePb3.Scfld02_0       3203095  0 +  4147112 C
e caeJap4.Scaffold17934   361302 46 +   591668 I
e caeRem4.Crem_Contig0   1820200 189 -  4500979 I

a score=-1557.000000
s ce10.chrX              4953030  5 + 17718866 TTT-------TA
s cb4.chrX              10290086 12 + 21540570 tttgaatgcctt
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1820389  5 -  4500979 ttt-------tt
i caeRem4.Crem_Contig0  I 189 C 0
s caeSp111.Scaffold409    148996  3 -   201088 ---------ctT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3203095  2 +  4147112 ----------tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   361302 46 +   591668 I

a score=252282.000000
s ce10.chrX              4953035 460 + 17718866  
s cb4.chrX              10290098 494 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1820394 434 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    148999 439 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3203097 426 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   361348 505 +   591668  
i caeJap4.Scaffold17934 I 46 I 177

a score=759446.000000
s ce10.chrX              4953495 1069 + 17718866  
s cb4.chrX              10290592 1051 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1820828 1109 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    149438 1080 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3203523 1109 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   362030 1196 +   591668  
i caeJap4.Scaffold17934 I 177 I 18

a score=1959.000000
s ce10.chrX              4954564 27 + 17718866 CGAAAGCAAAAA----GAAAACAGGAAAACT
s cb4.chrX              10291643 30 + 21540570 CAAGAAAAGAGACCCTCAAAACA-CAatgct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1821937 23 -  4500979 cggaagaaa-------cgaaaca-caaaact
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    150518 14 -   201088 ----------------gaaaaca-caaaact
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3204632 14 +  4147112 ----------------AATAACA-GGAAACc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   363226 18 +   591668 I

a score=114868.000000
s ce10.chrX              4954591 136 + 17718866 CAATT-----------GTTTC----------------GTTTCAGGCTCACGAGCATTATCAAATTAACGGTCCCGGCAAAGCTGTTCGTGGCTCGAAAGAAAAAATGGTGTATATGAGAGAACGAAAGGCACTGAAAACTATAGGAATCGTGGTTTTAGGTAA--------
s cb4.chrX              10291673 163 + 21540570 caatttttcgaaaccttttttgaactttaccTGAACATTTTCAGGCCCATGAGCATTATCAAATCAATGGTCCAGGAAAAACTGTCCGTGGatccaaagaaaaaatggtGTACCTCAGAGAGCGAAAAGCATTGAAAACCATTGGAATCGTGGTTCTAGGTAA--------
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1821960 146 -  4500979 caatttttgttaatttttcct----------------ttctcaGGCTCATGAACATTATCAAATTAACGGTCCAGGAAAGGCTGTTCGTGGCTCAAAAGAAAAGATGGTGTATTTGAGGGAACGAAAAGCTTTGAAGACTATTGGAATCGTGGTTTTAGGTA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    150532 129 -   201088 ca-----------------tt----------------tttccaggCACATGAGCATTATCAAATTAACGGACCAGGAAAGGCTGTTCGTggttccaaagaaaaaatggtgtATTTGAGGGAGCGAAAAGCTTTGAAGACGATTGGAATCGTTGTTCTAGGTA---------
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3204646 136 +  4147112 taatt----------attctt----------------tttcaagGCTCACGAACATTATCAAATCAACGGTCCAGGAAAAGCTGTTCGTGGTTCCAAGGAAAAAATGGTGTACCTGAGGGAGCGAAAAGCGCTGAAAACTATCGGAATTGTGGTTCTAGGTA---------
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17934   363244 145 +   591668 ---------TTGTTCTTTTGT----------------TTTCCAGGCTCATGAGCATTATCAAATTAACGGACCGGGAAAAGCGGTTCGAGGCTCAAAAGAGAAAATGGTCTACCTGAGGGAAAGAAAGGCGCTGAAAACTATAGGAATCGTTGTGCTTGGTA-TGAAAACA
i caeJap4.Scaffold17934 I 18 C 0

a score=-11201.000000
s ce10.chrX              4954727 41 + 17718866 GTTTTTTGCACATATAT---------GAGAATTTCTGAG----GGACTAACTTT
s caeRem4.Crem_Contig0   1822106 25 -  4500979 --TTTGAAC--------------------------TCAACTTGAatctgattt-
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold409    150663 35 -   201088 ATTTCTAGCCC---------------GATAACCGATAAA----AATATAACTTT
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3204796 24 +  4147112 ATTCCAAAC--------------------------TAAA----ACTTGAGTTTT
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17934   363389 38 +   591668 -----------GTAATTCAGTAAAGAAGGAAGTAATAAC----AACTAAATTT-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10291836 35 + 21540570 I

a score=280556.000000
s ce10.chrX              4954768 539 + 17718866  
s cb4.chrX              10291871 606 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1822142 561 -  4500979  
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold409    150698 556 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3204820 572 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   363427 555 +   591668  
i caeJap4.Scaffold17934 C 0 I 2357

a score=39467.000000
s ce10.chrX              4955307 230 + 17718866 AACAAAAAAAAACTATGTTTTGTTTTCTCTGTTTTTGCGGCAAGTTCGAC--ACAATTTGCGACTTTTTGCT--------TCCGTTGAA-AGTTGTATTTAT------------CCCTTGAATACCTACCACTATTGTCTGTTGTGAAA-----ACAGGCA-GAGAAACACTCATTTTAAGATTAATAGGGCACGTT-GAAAAACAACACATCAATCGTAGCATAT-GACTTGGATTATTGCAA--AGAATAGGCTTG----TTTTT-
s cb4.chrX              10292477 197 + 21540570 aa----aaat------------ccctattttttg------------aaaaattcaacctGCCAGCTTCTGTTTTCTTCTCCCCGATAAATCgttgctttt-----------------tttgaagc------cTATTGTCTGTGAGTAAATGTT-----------GAGACactcattttcagattaataGGCCAACCTAggcaaa--aacaagaaaatgttgCATAT-GACTGGGATTATTGTCTCGAGAaacttc-tg----ttttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1822703 217 -  4500979 AA--GGAAATAGTTGcg-tcagttttcttttttc------------aaaa--ccaatcTGCCAGCTTCTCTT----------AAATGAATCGTTGCTTCTAT------------CCGTTGAATAC------CCATTGTCTGTAGGGAAATCATAGCAGACA-GGGaaacacttattttcagattaatagGCCAACTT-GACAAAACAAGGAGAAATTGTTGCATAT-GACTTGGATTA-TGTCACAAGAATAGAC-TGACGATgttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    151254 224 -   201088 aa---aaaataattgcg-tcagttttctttttccttg---------aaaa--tcAATCTGCCAGCTTCTCAC----------AAATGAATCGTTGCTTTTATCCGTTGCATACTcccttcatttt------ccattgtttGTCGGAGAA----AACAGACG-GGAAAacactcattttcagattaataGGGCAACTT-GGCAAAACAACCGAAAGTTGTTGCATCT-GACGTGGATTA-TGTCACAAGgaaatgc-tt----tttttt
i caeSp111.Scaffold409  C 0 I 824
s caePb3.Scfld02_0       3205392 211 +  4147112 AG---AATATAGTTgcg-tgagttttcattttcc------------------taaaTCTGCCAGCTTCTCTC-----------AATGAATCTTTGCTTTCAT--------GACTTCCCTTATTGC------CAATTGTCTGTCAAAGAC----GGCAGACACGGAAAAcactcattttcagattaataGGGCAAAAA-GgccaaaacaacaacaattgtTGCATTTCGACGTGGATTATTGTCACGAGAAAAGGC-TG----TGTTTT
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   363982 2357 +   591668 I

a score=-80.000000
s ce10.chrX              4955537 8 + 17718866 TTTGTGAA--
s cb4.chrX              10292674 8 + 21540570 tcttcgga--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1822920 8 -  4500979 tgtttaga--
i caeRem4.Crem_Contig0  C 0 I 213
s caePb3.Scfld02_0       3205604 8 +  4147112 --TTTAGAAA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e caeSp111.Scaffold409    151478 824 -   201088 I

a score=-400.000000
s ce10.chrX              4955545 10 + 17718866 TTCAGGAAAT
s cb4.chrX              10292682  8 + 21540570 -aaaagaaa-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3205612  7 +  4147112 ---GGGAaat
i caePb3.Scfld02_0      C 0 I 1621
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e caeSp111.Scaffold409    151478 824 -   201088 I
e caeRem4.Crem_Contig0   1822928 213 -  4500979 I

a score=516.000000
s ce10.chrX              4955555 117 + 17718866 TTTTTTGTTTAGAAGGCATTAAATTGCTTTCGAAATTTTTCGGGTGAAACTTTTTTCAAACAAC---------CGGGATTAAAAGCTTTCCCAA---AATTTTGTCATTGGTAATAAAATATTAGAATT
s cb4.chrX              10292690 109 + 21540570 ------------caaataacAAATTGTGGCTGAAAACTTTtgtgacaaaa------aaaacaatgcaGATTTGCTAGCTTAAGGATTATCCCAACATAACCTTGACTCAAGTCATAAAATAT--GAATT
i cb4.chrX              C 0 I 1995
e caePb3.Scfld02_0       3205619 1621 +  4147112 I
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e caeSp111.Scaffold409    151478 824 -   201088 I
e caeRem4.Crem_Contig0   1822928 213 -  4500979 I

a score=0.000000
s ce10.chrX              4955672 1308 + 17718866  
e caePb3.Scfld02_0       3205619 1621 +  4147112 I
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e cb4.chrX              10292799 1995 + 21540570 I
e caeSp111.Scaffold409    151478  824 -   201088 I
e caeRem4.Crem_Contig0   1822928  213 -  4500979 I

a score=393.000000
s ce10.chrX              4956980 47 + 17718866 TTTGAATACAAAATGAAAAATCTGCAAAATTTG------------AAACCCTCATCATT
s caeRem4.Crem_Contig0   1823141 55 -  4500979 TCTAAGTACAGAA--AAggatttagaaaattttctgtgattttgtgAACCCCTGTC--T
i caeRem4.Crem_Contig0  I 213 C 0
e caePb3.Scfld02_0       3205619 1621 +  4147112 I
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e cb4.chrX              10292799 1995 + 21540570 I
e caeSp111.Scaffold409    151478 824 -   201088 I

a score=-556.000000
s ce10.chrX              4957027 2 + 17718866 TT-
s caeRem4.Crem_Contig0   1823196 2 -  4500979 -TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152302 2 -   201088 TT-
i caeSp111.Scaffold409  I 824 C 0
e caePb3.Scfld02_0       3205619 1621 +  4147112 I
e caeJap4.Scaffold17934   363982 2357 +   591668 I
e cb4.chrX              10292799 1995 + 21540570 I

a score=2238.000000
s ce10.chrX              4957029 21 + 17718866 TTTCCAAACTA-TAAACATTCT
s cb4.chrX              10294794 22 + 21540570 tttcaaagcctCCAGAAATTGC
i cb4.chrX              I 1995 C 0
s caeRem4.Crem_Contig0   1823198 21 -  4500979 TCTCAGAACAT-CAGACGATCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152304 21 -   201088 CTTCAGAACTA-TGAACAATCT
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3205619 1621 +  4147112 I
e caeJap4.Scaffold17934   363982 2357 +   591668 I

a score=8840.000000
s ce10.chrX              4957050 19 + 17718866 CAATTTGCC--ACAACACTAA
s cb4.chrX              10294816 19 + 21540570 CAATTTGCCAAACACCATT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1823219 17 -  4500979 CAATTAGCC--ACAATACT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152325 17 -   201088 CAATTTGCC--ACAACACA--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3207240 17 +  4147112 CAATTTGCC--ACAACACT--
i caePb3.Scfld02_0      I 1621 C 0
e caeJap4.Scaffold17934   363982 2357 +   591668 I

a score=57731.000000
s ce10.chrX              4957069 163 + 17718866 GTTGTTTACTGCCCACCA-------CGACAA-CATTCA----------TAAATGTGAC------GGACCAAGCGTCTGCATGATGGATGGTTGA---------------------AGTTGATCGTTTGATTGTTTTCCAGGTGATGGGCTTCATGATAAACC----C------TTTGATTATTG---------------CCAGAGCCCCTCCTCGAACAATGGGATATTTTTT
s cb4.chrX              10294835 186 + 21540570 -TTGTT---TATTCCCTC-----GAAAACAG-TCGTCA----------TAAATGTGGC------ATTTCAAGCATCTGCATGATGGATCAATTGGAGAAAGAGAATGAGGGAGATGGCTGATTGTTTGATCGTTTCC-AGGTGACAGCGTCCATGATAAACCTTCTCCCGA--TGTGCCAATTG---------C----TCC-----TTCTGCTGATACAATCggatgattttt
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   1823236 181 -  4500979 -TTGTTTACTACTCCCTC---ATGAAAAGAA-TCCTCA----------TAATTGTGAC------GGACCAAGCGTCTGCATGATGGATGATCTG---------------------AGTTGATCGTTTGATCGTTTTTAAGGTGATTGCTTTCATGATAAGAC----CCCGA--TGTGCCAATTGGCAGTATATC----TCCCGGGTCCCTCCTTGCACAATgggttatttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152342 191 -   201088 -TTGTTTACTACTTCCCCTTTCTGAAGACAACCCCTCA----------TAATTGTGAC-----GACGCAAGCCGTCTGCATGATGGATGATCTT---------------------TGCTGATCGTTTGATCGTTTTCCAGGTGATTGCTTTCTTGATAAACC----TCCAACTCCTGCCAATTG-CTCGACATCTCTGTCTTGGGTCCCTCCATTAACAATgggatatttttt
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3207257 186 +  4147112 -TTGTTTACTACTCCCCC---ATGAAGACAG-GCCTCA----------TAATTGTGACG----GACACAAAGCGTCTGCATGATGGATGCATTT---------------------TACTGATCGTTTGATCGTTTTCCAGGTGATTGCTTTCATGATAAACC--CTCCCGTCTTCTCCCAATTG-CCCAATATC----TCTTGGGTCCCTCCTTTCTTGATggcatatttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   366339 154 +   591668 GTTATT---TACTCTCTC-------CATCAC-GCTTCAAGCCACCCACTAATTGCGACGGCTCAAACACAAGCGTCGGCATGATGGATGAAATT--------------------------------TTATCACCTTCCAGGTGATT---------------------------TGGCCCCACTG-----CTCTC----TTTAAGATCCCTCTCCAAACAGTGgcatctttttt
i caeJap4.Scaffold17934 I 2357 C 0

a score=-10550.000000
s ce10.chrX              4957232 28 + 17718866 TGGTCCAC------------TGTTGCCGGG--------CCCCAAGAT-C----------------
s caeRem4.Crem_Contig0   1823417 23 -  4500979 ------ga------------agatgccTTGG-------CCCAAAGCT-C----------------
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold409    152533 31 -   201088 ------gag-----------agatggCTGGGCTGGCCCCTCTCAGCT-T----------------
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3207443 23 +  4147112 ------ga------------agatactTGG--------CCCTAGGCTCC----------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   366493 48 +   591668 --------ctttttcttttttaatttctgt--------cCCTCACAT-CAGCGCGCTAAAGTTTC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10295021 58 + 21540570 I

a score=256974.000000
s ce10.chrX              4957260 370 + 17718866 CCGAAGCGTTTACGACACCCACCATCA----------------CTCCTATTTACTACCGTG---CCTGT-GGAGAAGAAGAAGAAGAAATGTAATGAGGAA--GAGTGTTAAAAGAGGAGCAGGAGGCGATCTTGTGGA---GACGAAACATTCGGAGTGGCAGG--------------------------AGGA----CGGCG-----GCGACAAGAGCATTACACACATTGGCAAATA-G--CA-AAAAGATTGCAAGTTGTGAG-GAGATT-------------GAGAGATGCCG---TGCTGCTGATCG-GAGACGATTTCTTGGAAACTCCCC---------------------GGGTGCCTGCAAGATACTCTGTGATAGTGGATAGGGAGA-CAGACGGCAAAAGACAT----ACAATAGATC---AAGAAAGACGGAGAGCTGCTCC----CGACCAA----------CCAATTTTT-CAAGTAACCC
s cb4.chrX              10295079 452 + 21540570 CCGAAGCGTTTACAACACCCACCACCGG--------CATCACTCTCCTATTTACTACCGTGGCCCCAGT-GAAAAAGCAG----GGAGATGTAATAAGGAAGCGAGTGTTAAAAGAGGAGC---AGGCGATC-CGTGGAGACGACGAAACATTCGTGGTGGCACAGtaagagagatagagagagagaaaataggC----CGGCAGCAATGCGACAAGAGCATT--ACACATTGGTAAATAGG--CACAAAATTCCGCGGGTTCTGAG-GAGAAGATCGGAGAGGAGAGATAGATGTTG--CTGCTACTGATCG-GAGACGATTTCTTGGAATCCCCCCTCCTCCCGCTTGAGAAGATGAAA-----AGAGAGATACTTTGTGATAGTGGAT--GGTGGCCAGACGGCAAAAGACAT----ACaatagatcaaaaaagaagagcgaGAGCAGCTCT---CCGACCAAGACCACCCTCCCGATTTTT-CAAGTAACCC
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   1823453 350 -  4500979 CCAAAGCGTTTACAACACCCACCATCA----------------CTCCTATTTACTACCGTG---CCAGT-GAAAAAGCA------GAGATGTAATGAGGAA--GAGTGTTAAAAGAGGAGC---AGGCGATC-CGTGGA---GACGAAACATTCGTGGTGGCAGA--------------------------AGGA----CGGCA-----GCGACAAGAGCATT--ACACATTGGCAAATA-G--CA-AAAATTCCGCGGGTTCTGAG-GAGATG-----------GAGAGAGATGCGG---TGCTGCTGATCG-GAGACGATTTCTTGGAATCGCCGC----------------------------AGCGAGATACTTTGTGATAGCGGAT--GGCGA-TAGACTGCGAAAGACAT----ACAATAGATC---AAGGAAGAGAAAGAGCAGCTCT----CGACCAG----------CCGA-TTTT-CAAGTAACCC
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold409    152565 366 -   201088 TCGGAGCATTTACAACACCCACCATCA----------------CTCCTATTTACTACCGTG---CCAGC-GAAAAAGCAT----TGAGATGTAATGAGGAA--GAGTGTTAAAAGAGGAGC---AGGCGATC-TGTGGAG--GACGAAACATTCGGGGTGGCAGA--------------------------AGGA----CGGCA-----GCGACAAGAGCATT--ACACATTGGCAAATA-GCACA-AAAATTCCGCGGGTTCTGAG-GAGATG-------------GAGAGATGCGATGCTGCTGCTGATCG-GAGACGATTTCTTGGAAT-CTCCC---------------------GA-----TGTTAGATACTTTGTGATAGGGGAT--GGCAG-CAGACAGCAAGAGACAT----ACAATATAtcacaaagaagaagaaagagcagCTCTCGGCCGACCCA----------CAGACTTTTGCCAGTAACCC
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3207467 354 +  4147112 CCGAAGCGTTTACAACACCCACCATCA--------------CTCTCCTATTTACTACCGTG---CCACTGGAAAAAGCAC----AGAGATGTAATGAGGGA--GAGTGTTAAAAGAGGAGC---AGGCGATC-TGTGGA---GACGAAACATTCGGGGTGGCAGA--------------------------AGGA----CGGCA-----GCGACAAGAGCATT--ACACATTGGCAAATA-G--CA-AAAATTCCGCGGGTTCTGAG-GAGATT-------------GAGAGATGCGA---TGCTGCTGATCG-GAGACAATTTCTTGGAATCCCCCC---------------------GT-----TGTGAGATGCTCTGTGATAGCAGAT--GGCAG-CAGACGACAAAAGACAT----ACAATAGATCGAAGAG---------GAGTAGCTCCCACCCGACCCA----------CCGATTTTT-CAAGTAACCC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   366541 347 +   591668 CTGGGGTGTTTACAACACCCACCATCAGTTTCCCCTTCTCTCTTGCCTATTTACTACAGTG---CCAGT-GGAGC---------AGAGATGTAATGAGGAT--GGCTTT--GAAGAGGAGT---AGGCAATC-CGCGGA---GACGAAACACTCG--GTGGCAGC--------------------------AGCATCAGCAGCA-----GCGACAAGAGCATT--ACACATTGGCAAATA-G--CG-AAAATTCC--------TGAGAGAGGGT-------------GAAAGATGCGG---GGCTGCTGATCGAGCGACGATTTCTTGGAATCCCCAT----------------------------GGCGAAATACCTTGGAATAGAGGGC--GACGA-CAGACGGGAAAAGACATACACACAAACGATC---GAGAGTGAAAAAGCGT---------------------------ACGAATTTT-CAAGTAACCC
i caeJap4.Scaffold17934 C 0 I 40

a score=-271.000000
s ce10.chrX              4957630 48 + 17718866 C--TCGTTTGGATC-ACTTTTTCAAACGAA-CACCACCAAGGCAAATTGGTT
s cb4.chrX              10295531 42 + 21540570 C-TCGTTTCGAATC-acatttg-aagaaaa-agaaaagaa------ggaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1823803 43 -  4500979 C-CTcgtttgaatcaaaaattg-aaacgaa-cGTCAGGAA------AGATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152931 47 -   201088 A---CGTTTGAATC-ACATTTG-AAACGAATCCCCGGAAGATTGTTACAATT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3207821 49 +  4147112 CACTCGTTTAAATC-GCATTTA-AAACGAA-CACCGAGAATCAAATAGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   366888 40 +   591668 I

a score=45071.000000
s ce10.chrX              4957678 324 + 17718866 CCA--G-----AAATCGGAAGAGA-------------------TCA-------AATAAAAAT--------AAACTATTAAAA-----------GTACAAG-----CAACCTT-TCAT--AATCGCTACATTTCTTAAATAAGGTATGGCTAAC------------ACCCTTGGCCGACA-CAATCTCCATC---------TCTAGAGTTGAAATGCGACGAGCGGGGGTAAA-TGAGAAACCTGTAATTATGGTGTCAATTGTCGGTGCATCT-----------TATTTTTTATCTACGTTTGGGAATCAAG-----TCAACCGGGGAATCTGACCCC-TTCCGTTTGGTCACCCTC-------TTCTT--CTTGTGTTTC----------------------------TCG------ATGC--CAGAA-----------------ATATATCTCTTC-CTGCTTTTCC------TGATCAAAAAACT---AGGA------A
s cb4.chrX              10295573 407 + 21540570 CCA--GGAGCAAAATCGAATGAGTTC---------CAGAAACACCA-------CATGGAAA---------CGATCCCCAGAG--------CACATCAAAG-AAGCTATTCTCCGGAT--CACCAAGTAATTTTGCAGGAATCGGAAGGCTAAC------------GTCCTTGACCGTC-----TCGCTATCTTTGGTCTTTCTCGAAGTTGCGTGGGTTGAATAGA-------TCGGAAACCTGTAATTATGGTGTCAATTGCCGGTGCATCTTAGGGAATGACTGTTTTTTATCTATCTGTGGGAATCAAG-----TCAACCGGGGAATGTAACCCC-TTTCGTTCGATCGCACTTGTATGTCCCTCT--CTTATTTCCTGGTctcattctttt--------------tcttatGCCA-GCCAGAGAAGTGCTTCG-GATCAGTTACATATCTCTTCTCCGCTTTTCC------TGATCAGAAAACT---AGGGGAACACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1823846 345 -  4500979 TTA--GG----AAAATGGATGAGC---------------ATCATCA-------TGTCTGAA---------ACATCAACATAG-----------GTCAAAGTATAATAATTTC------------GGTAGCCATCTCGGAAGTCAATGGCTAAC------------GTCCTTGACAA-------TCGCTATC---------TATCGAAATGAATTGCAACGAACGGAGACGGGTTGAGTAACCTGTAATTACGGTGTCAATTGCCGGTGCATCG-----------TGTTTTTTATCTATCCCTGGGAATCAAG-----TCAACCGGGGAATTTGACCCC-TTTCGTTCCGTCGCCCTT-------TCCgt--cttctctcct--tctcatCTCTTT--------------TCG------A-GC--AATGAGTGCTTCTCGATCAG--AGATATCCCTTC-CGGCATTACG------TGATCAGAAAACT---AGGA------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    152978 340 -   201088 CTGGAGGAAAagcttcagaaaaaacttt-------ggaaaaCGTCGagttctgaatgaaa-------------------aag--------caattttaGG-----TACTTTT--------------------CCTCCGGAATCCATGGCTAAC------------GTCCTTGACCG-------ACACTATC---------TCTCGAATGAAATTACGATGAGCGGAG------GTGCATCCCTATAATTATGGTGTCAATTGCCGGTGCATCT-----------TACTTTTTATCTATGTGTGGGAATCAAG-----TCAACCGGGGAATTTGACCCCTTTTCCTCCTGTCGCACAt-------tattcatcttcttcctg-----CATCTCGAC--------------TCG------A-GC--CGATGGTGCTTCTCGATCAC--AAATATCTCTTC-CTGCTTTTCA------TGATCACAAAACT---AAGA------A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3207870 355 +  4147112 Ctg--agaagagaaacaaaaaagatc-----------------ccAAGATCTCCAAGAAAT---------ACACTTCCGAAG--------TTCATTCAGG-----TACTTTT------------AGGCGTAATCCCGGGAATTCATGGCTAAC------------GTCCTTGACCG-------TCACTATC---------TTTTGAATGCG-----GAGGAAAACGG------GAGGAAACCTATAATTATGGTGTCAATTGCCGGTGcatct-----------tgttttttatctCTCCCTGGGAATCAAG-----TCAACCGGGGAATTTGACCCC-TTTCGTTCCGTCGCACTT-------TCTTC--CTCCCTCCTT-----CATCTTTTCTACTCATCATGTCTTCG------A-GC--CGAAAGTGCTTCTCGATCAG--ATATATCTCTTC-CGGCTTTTCC------Tgatcagaaaactaaaaaga------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   366928 388 +   591668 --------TCAGAAACAGGAcggaatttatttttaaaaaaaaagca-------aaaaaaaactgtaaagaATACGCTTAAGATCTAAATTTTAATGCAAA-----TATTTatcagattaaaaaaaacagttttacaGGTAAT--GTTGCTGTCCTGTCCTGTCCTGTCCTTGACCGGTCTTGTCCACTATCCACATTC--TATCCAAATAA------CTGAGAGGGA------CGTCTAACCTGTAATTATGGTGTCACTG-----------------------TGCCGTTTATCGGAATCTGGGAAGGAAGAAGGCTGGACAGACAAAGCAAATCCC-tccc-------cgcattt-------ttttt--ctttccgttCGGACGCACTTTCA---------------ATG------A-GC--C--TCTTGTTTCTTGATCAC--AAATATCTCTTT-CTGCTCTTTATCGTAGTGAGCAGAGAACC---AAGA------A
i caeJap4.Scaffold17934 I 40 I 1594

a score=11883.000000
s ce10.chrX              4958002 135 + 17718866 CAGGTACAATCACGTCGAAAATCGG---------CAGCCACATGCTCGT--------CAGTGT-AATTTATATTCAAAAT-----------------------------GGCAAGTGTTGTAGTTTGTT-----GGACAAAAATGTACGGG-AAAAAATGAGA-----TGGTCGTTAAATCCGTCTTCAAACA
s cb4.chrX              10295980 184 + 21540570 CAGCAACAATCACATCAAAAATCATCAGGAATCAGTGGCACCTGATATATCAATTCCCAGTGTAAAATtatcattgaaatttttctctattGCGTTGTGCAATCCTAAGTGGTGGAAGCTTTgttaaca-----caaaaaaatcgTTGCGT-aaaaaaaCTAAGG---TGGTCTCTAAACCGATACACAAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1824191 118 -  4500979 CAAGAACAATCACATCGAAAATCAG---------------------------------AGTGT-AAATTATAGTTGAAAT-------------GTTAAGATATTCCGAGAACAAGTGGCTTCGTTAAca-----cggaaaa---------c-aaaaaag-------------cgcTAAACCGATCATCAAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    153318 150 -   201088 CATCAACAATCACATTGGAAATCAG---------TTGTTGTTTAATGAAT-------TGGTGT-AATGtatatttcaaat--------------------tataCAACGAACGAATGTGTTTGGATGTT-----AGAAAAGAATTTCGAGT-AGaaaaaaaCGGGCAGTAGTCGCTGAGCTCTACCTCAAACA
i caeSp111.Scaffold409  C 0 I 304
s caePb3.Scfld02_0       3208225 154 +  4147112 cAGGAACAATCACATCGAAAATCGG----------TGGCATCTGATTAG--------CAGTGT-AATTTATATCAAAAGA--------------------TAAGCTACGAACAAGTGACATCGTatgtttgtggaaaaaaaagtgttgaacaagagaaaaagtggCATTGGTCGCTAAACCGTACCTCAAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=-5094.000000
s ce10.chrX              4958137 18 + 17718866 GTCAAACAGTGTGGTTCG------------------
s cb4.chrX              10296164 12 + 21540570 CAAAAAGGACAt------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1824309 18 -  4500979 AACCAGTAACCTCTTACg------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3208379 31 +  4147112 -----ATGACTTACTGGGAACTATCAGTGTAGTTTG
i caePb3.Scfld02_0      C 0 I 380
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    153468 304 -   201088 I

a score=2399.000000
s ce10.chrX              4958155 48 + 17718866 GGAAGGACACTTTTACTGTAGTTTTCGGAGCAATGTTAAGCTTCAAAG
s cb4.chrX              10296176 24 + 21540570 ----------tattactgt--------------agttaagcTACAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1824327 34 -  4500979 ----------tattactgtagtttgc----CAAAGTTGAACTACGAAG
i caeRem4.Crem_Contig0  C 0 I 259
e caePb3.Scfld02_0       3208410 380 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    153468 304 -   201088 I

a score=151.000000
s ce10.chrX              4958203 3 + 17718866 TTA
s cb4.chrX              10296200 3 + 21540570 TCA
i cb4.chrX              C 0 I 206
e caePb3.Scfld02_0       3208410 380 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    153468 304 -   201088 I
e caeRem4.Crem_Contig0   1824361 259 -  4500979 I

a score=0.000000
s ce10.chrX              4958206 720 + 17718866  
e caePb3.Scfld02_0       3208410 380 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10296203 206 + 21540570 I
e caeSp111.Scaffold409    153468 304 -   201088 I
e caeRem4.Crem_Contig0   1824361 259 -  4500979 I

a score=146.000000
s ce10.chrX              4958926 58 + 17718866 TTTCCAGTTTACCAATTCTGAGAAA-GTCTGAAAC---GAGcacaca-cacacacacacacac
s caeRem4.Crem_Contig0   1824620 63 -  4500979 TCTCAAATATACTCATACTCAAAAGCATCTGGAACCTTGTACCCACATCAAACACTTGAGTGG
i caeRem4.Crem_Contig0  I 259 C 0
e caePb3.Scfld02_0       3208410 380 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10296203 206 + 21540570 I
e caeSp111.Scaffold409    153468 304 -   201088 I

a score=749.000000
s ce10.chrX              4958984 31 + 17718866 aATGTGCTCTTAAGAATGAAGAGTAGACAGC
s cb4.chrX              10296409 17 + 21540570 --------------AATGAACtgtcaaagaa
i cb4.chrX              I 206 C 0
s caeRem4.Crem_Contig0   1824683 31 -  4500979 AGTACTTTTCTAGAAATAAACTGTCAAGAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3208410 380 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    153468 304 -   201088 I

a score=5727.000000
s ce10.chrX              4959015 49 + 17718866 ------AAGTGTGTATAAACATG--CCATAGTGTATT----GAAAGAACCTATAGTGCAT-T
s cb4.chrX              10296426 51 + 21540570 aaaaagcaaagtgTGTCCACATG---------GTATTCGCAGAGACAACATATAGTGCAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1824714 54 -  4500979 A------AGTTTATGTCCACATGGGAGATGTAGTACTCACACAGACAACATATAGTGCAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3208790 52 +  4147112 ------AAGTGTGTGTCCACATGGGCGTT---GTATTCGCAGAAACAACATATAGTGCGAA-
i caePb3.Scfld02_0      I 380 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    153468 304 -   201088 I

a score=94232.000000
s ce10.chrX              4959064 297 + 17718866 TGTGCTTTATGGTGGGCATGAAGTGATGTCATCT---GATCCCTT------------GTTGGGTCAATCGTTCTCACAAAAAAAAGCTGTGG------AACA-----CATTCGTAAACAG-AACGTC--GATGCCC----CCCGTT-TCTGAATCATCAGTGACATTTTACTTCA-TTTCTAAACATAACATTTCCTTTTT-------------------TTTGCC--------TTCCGTCATTGTTTCTCATATTTTTCTATACGACGATTACTCATCAAA-AGAGGACACGCTTCATG-TTTTGTAACGAAATGGAA-AACTATTTTTTT-----GTTCTTATTCGGGAAAAGTTGGA----TGTGAAA
s cb4.chrX              10296477 320 + 21540570 TGTGCTTTCTGATGGACATGAAGTGATGTCATCC---GATCCTCAGGTCGCCCCccatccgaa-----------------aaaaaaagctagGAAGACAAAA-----TATTCGTAAACAG-CACCCCTTGCGGCCC----CTCACGTTCTGAATCATCATCAACATTTTGgttca-tttcaaaaca-------ttcatttCTCTAttcccctttttcttttttttggttaccATCACCGTCAttgtttctgatatttttctaTACAGCGATTAGTCATCAAACAGTCGA-ACGCTTCA---TCCTatattgaaaaacaataaacatTCTTTTTTGATGCCTTTTTTCAAACGGAAGGAGAAA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1824768 314 -  4500979 CGTGCTTTCTGATGGTCATGAAGTGATGTCATCC---GATTCTTCGTCTCCGTCCCACTTGGGTCaatctcc--------aaaaaaagttgg------aaga-----cATTCGTAAACAG-AACATC--GATGCCC----CATACA-TCTGAATCATCATTGAcatttcgctt---tttctaaacataacattttcatttttttattc----------tttttttg--------tcccgtcattgtttttgatatttttctataTAGCGATTACTCATCAAA-AGACGA-ACGCTTCATG-TTTTGTACagagaaacaaaaactattatttt---atGCTTTTATACGGAAGGAGGTGGAAACAtatgaaa
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold409    153772 273 -   201088 tgtGCTTTCTGATGGTCATGAAGTGATGTCATTCCGGGTCCCCCG-----TGCCCTTGTTGGGTCAA-------------TCGACACGTTGG------AAGA-----CATTCGTAAACAGAAACATC--GGTGCC-----CCTAAA-TCTGAATCACCATTGACATTTTGTTCCA-TTTCTAAACATAacaattttccttt-------------------tttccg--------cCCCGTCATTGTTTCTGATATTATTCTATACAGCGATTActcatcaaa-aatcga-acgcttcatgtttttgtatagagaaacaaaaa-------------------------------gggtGGAAACATGTGAAA
i caeSp111.Scaffold409  I 304 C 0
s caePb3.Scfld02_0       3208842 309 +  4147112 TGTGCTTTCTGATGGACATGAAGTGATGTCATCATATGATCCTTA------GCCCATTCTCGGTCAAGT-----------tcccttttttga------aagaagacgCATTCGTAAACAG-AACATC--GGTGCCCTCCACCAAAA-TCTGAATCATCATTgacattttgtttcattttctaaacaataacatttccttttttc--------------catttccg--------tcCCGTCATTGTTTCTGATATTGTTATATACAGCGATTACTCATCAAC-GG-CGA-ACGTTTCatgtttttgtatcaaaaaacaataactaTTCTTTT----------TACACGGAAGGAGGTGGAAACATGTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=-723.000000
s ce10.chrX              4959361  8 + 17718866 CATTGGGA--
s cb4.chrX              10296797  8 + 21540570 CATGGGGA--
i cb4.chrX              C 0 I 81
s caeSp111.Scaffold409    154045 10 -   201088 CATTTGGGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3209151 10 +  4147112 Catcccaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeRem4.Crem_Contig0   1825082 22 -  4500979 I

a score=-1635.000000
s ce10.chrX              4959369 36 + 17718866 GAACACCGCGCACGGTTGAGGGGGGGGGGGGGGGGG
s caeSp111.Scaffold409    154055 18 -   201088 GAAACAAAAGCAAgac------------------cg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3209161 18 +  4147112 aagaaacaaacatgCT------------------GG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10296805 81 + 21540570 I
e caeRem4.Crem_Contig0   1825082 22 -  4500979 I

a score=1473.000000
s ce10.chrX              4959405 17 + 17718866 GAAGAGGAAA---CCAATTT
s caeRem4.Crem_Contig0   1825104 17 -  4500979 gaaaacggaa---acaatcc
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold409    154073 17 -   201088 gaagaaaaaa---acaattc
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3209179 17 +  4147112 GTGGAGAAAAAGCACAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10296805 81 + 21540570 I

a score=48676.000000
s ce10.chrX              4959422 554 + 17718866  
s cb4.chrX              10296886 451 + 21540570  
i cb4.chrX              I 81 C 0
s caeRem4.Crem_Contig0   1825121 515 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154090 482 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3209196 506 +  4147112  
i caePb3.Scfld02_0      C 0 I 219
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=-8858.000000
s ce10.chrX              4959976 61 + 17718866 ATACGTGTCAAATTTTTTTCTA--CATTTGAACATTGAATCATTTCTTAATAAAACTAGAGAC-----
s cb4.chrX              10297337 59 + 21540570 ---TCTTCCAA----TTTCAGAGTCATCTTACTGTAGCTACGTCATATCTCAAGA--AGCTTCTCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1825636 60 -  4500979 ---tcctacaaaaattttcaga--cattttcagattggaacataaactttcaaaa--agattttcta-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154572 32 -   201088 -------------------AAACGCATC----------AGCATCACCAGAAAAGT--AGAAAC-----
i caeSp111.Scaffold409  C 0 I 106
e caePb3.Scfld02_0       3209702 219 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=-8033.000000
s ce10.chrX              4960037 133 + 17718866 CATCGATATATTGGAAAATACGGTTCCTTCATTACCAACTTACAGTTAAAAAACCTCGCTTTTCCTGATATTGATGACAAAAAGATTAATTCTAGATTCGAATATATCACTAAGTATGGCAAGAAAAGAGTTC
s cb4.chrX              10297396  61 + 21540570 CA------------AAAGT----------------CGTCCAACAAAGGAGA---------------------------------------GAAAGCCAACACTTTCCCATGCATCTTTTCTGAGAAAG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1825696  82 -  4500979 CA------------AAAGTG-------------AACGACC-TCATTGAAGA-------TTTCTTCTAGTCTGG-------------TCCCAATAGATTGAATTTCATCATACAATGGTGCTAGTAAAA-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3209702 219 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e caeSp111.Scaffold409    154604 106 -   201088 I

a score=-6343.000000
s ce10.chrX              4960170 44 + 17718866 TGAGAACA-TCTTTAGTCTGCAGTGCCACGACGTCTGCA------ATTGTT
s cb4.chrX              10297457 12 + 21540570 ------------------ACCGAA---------------------ATTGTT
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig0   1825778 43 -  4500979 CATCAATGATCATGAATCACCAAATTTCTGCATATTC--------ATTGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154710 48 -   201088 cgaaaatactccttaattgacaatttttccatttctcctCCAAAAATT---
i caeSp111.Scaffold409  I 106 C 0
e caePb3.Scfld02_0       3209702 219 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=-3005.000000
s ce10.chrX              4960214 52 + 17718866 TTGCAACATTAAAATCTTACGGTTCCTTATCAAATTATCCCTTAAAAAC-----------CGA---
s caeRem4.Crem_Contig0   1825821 45 -  4500979 --------TGAACA-----------CCTA--AAAATATCATTTGGAATGTCCACTTTCAATGATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154758 39 -   201088 -------ATGCAAAAATTGGG----CCTA--AAATCCTTATTTGAACTG-----------CGA---
i caeSp111.Scaffold409  C 0 I 3
e caePb3.Scfld02_0       3209702 219 +  4147112 I
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10297469 60 + 21540570 I

a score=-6549.000000
s ce10.chrX              4960266 23 + 17718866 ACGGCCGTTC----GCTTTTCACTGAC--------------
s caeRem4.Crem_Contig0   1825866 22 -  4500979 GTGGCCGCTA----GTCCCTCGTGCG---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154800 27 -   201088 -------ACATCATATTTCTCAATCAATCCC-------CTC
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3209921 30 +  4147112 -------ACA----GTCACCCACTTCATCCCAAACTGGCTA
i caePb3.Scfld02_0      I 219 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I
e cb4.chrX              10297469 60 + 21540570 I

a score=-11116.000000
s ce10.chrX              4960289 126 + 17718866 CAATTTCA---TAATTACAAAACATTTT--TAGGCGTTTTTCTCACGTTGCGCTCTGCCGAACGCCTCATCTTCGAGGCGGGAAGGCGCGACGCGGT---------CCCCCAATT-----------CAAAT------TTTCCAGGACACCACCACCA
s cb4.chrX              10297529 143 + 21540570 CAGTTTCGCAATTCCt-----acttttt--cca-aattcgTTTCA-ATTTCGCCCCATCGCGC-CTTGATTATTAAAGCGTAAA--CTTGAAGCGGTCCCCCATATTCCATTTCCTTCAttccactcaaaaaaaatctttcggGACGTCT--CATca
i cb4.chrX              I 60 C 0
s caeRem4.Crem_Contig0   1825888 103 -  4500979 ---CTCGGTCATTCTTTCGTAACGGCCT--CAG-AGTTTATTTCA-ACATTGCCCCG--------CTGATAATCGCAGTTTGCA-----AAAGCGG----------Tccgttttc-----------caaaa------tttcgggACGcct-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    154827  95 -   201088 -----------TGATTTCGTAACAATTC--CATGCTTTCATTAAA-ATCTCGCTCTATCGCAC-CCTGAT-ATCGAGGCGGCAA----------------------ACGACGATT-----------CAAAT------TTTGGAGGGGCCt-------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3209951  95 +  4147112 -----------CTATTTCATAACtagtcttcat-ttttcatc--a-atttcgcTCTACTGAAC-AGTGATAATGGAAGCGGGAA----------------------TCcatgatt-----------caaat------tttggtggtgccc-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   367316 1594 +   591668 I

a score=106896.000000
s ce10.chrX              4960415 316 + 17718866 CACTGTTTTTCC--------CTCCGTGTCCCGCCCTTCCGAGGACCGTCTGTCGGATGGCCGCTCTCCAGTATTCCCTCAATCCCTCATTCGGTTGGGCGGGGCCAGCCGAC---------CAATGGCAAAG-AGCGGCGCGGACGCGTCGCGTGCAG-CAGTATAAATAGGCCACGAGAGGCAGAGTTGTGCACTGGTTTTTC-ACTAGGCACCCG-CTTTCAGT--TCCCAAAAA------AATGTGTGACGACGAGGTTGCCGCTCTTGTGGTGGACAATGGATCCGGAATGTGCAAGGTGAG-----------TTGATAACATTTGAATAAT----TCTAATTAGGGACAAAGGTT--------------
s cb4.chrX              10297672 319 + 21540570 cactgttttttttt----ccgcgCTGGCCCCT-CCTCCTGAGGAGTGTATGACGGATGG-CACTCTCCGTTTTTCCCTCAATCCCTCGTTC-GGTGGGCGGAGTCAGCCGGC---------CAATGGCAGTATCGCAACGCGGACGCGTCGCGTGCTG-CAGTATAAAAGGCCCGAGAG-AGC-GAGCCGTGCACCGCTTTAC------GGCGCTCG--ATTCAGTGAtcctacaaa------aatgtgtgacgACGAGGTTGCAGCTCTCGTAGTGGACAATGGCTCCGGAATGTGCAAGGTTAGTATTGGGCA--TTGATAAG-AAGGGATAAG----GGACATAGGG-CAGAGGGAT--------------
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1825991 304 -  4500979 cactgttttttttt------gtcttcgaCCCG-CCCCCTGAGGAGTGTATGACGGATGG-CACTCTCCG-TATTCCCTCAATCCCTCGTtt-ggtgggcggagtctccCGAC---------CAATGGCAGAGTTGCGACGCGGACGCGTCGCGTGCTT-CAGTATAAAAGGGAGGGCAG-AGC-GAGCCGTGCACCGCTTTAC------GGCGCTCG--ATTCAGTGATcctacaaa------aatgtgtgaCGACGAGGTTGCAGCTCTCGTAGTGGACAATGGCTCCGGAATGTGCAAGGTAAGCAATGGG----TTGATAAGTCTTAGATAA----------------CAACTGGGT--------------
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold409    154922 310 -   201088 cactgttttttc--------tccCTCGTCCCG-CCTCCTGAGGACGCTCAAAAC----------CTCTCGTTTTGCCTCGATCCCTCGCc--ggtgggcggagtcaaccGAC---------CAATGGCATAG-CGCGGCGCGGACGCGTCGCGTGTAAGGGGTATAAATACTAGCCCACTAGC-GAGCTGTGCACCATTTGTT------GGCAAACG--CCTCAGAGGACAGTTAACAAGAAGCATGTGCGACGACGAAGTAGCAGCCCTTGTTGTGGACAATGGATCCGGAATGTGCAAGGTAAGTGTTTATCAG-TTGATAAG-----GCTTAT----AGTTCTAGGGTTCATTAGAT--------------
i caeSp111.Scaffold409  C 0 I 181
s caePb3.Scfld02_0       3210046 293 +  4147112 ttgtgttttttt--------gattatggCCCG-CCTCCTGAGAACCGTCTGACG----------CTCCGAATTCCCCTCAATCCCTCACTCAAAGGGGCGGAG-----CGTCGCTTTTCTGCGATGGCAAAG-CGT-ATGCGGACGCGTCGCGTGCTA---GTATAAAAAGGAGACCCACAGC-AAGAGCCTCCCTACTCTTT--ACGAGGCAAACGTTCCCCGATTAACTTTCAAC------CATGTGCGACGACGAAGTAGCTGCCCTTGTTGTGGACAACGGTTCCGGAATGTGCAAGGTAA-------------------------GCTTGG----GAACTTAGTGAAAACTAACT--------------
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17934   368910 345 +   591668 cactgtttttttttgttccttccCGTGTCCC--TCCCCGGTCGTTCTTCTTCCGTTTGC-CGCCCTCCCGATTCGCCTCAATCCCTCACC--GCTGGGCGGAGTCTACCGAC---------CAATGGCAGAGTAGCGGAGCGGACGCGTCGCGTGCCT-CAGTATAAATAGCCATCGGGCGGA-GAGTTGTGCACTAGCCTGAAGACTAGCCCCCCG-----CAGAAGACTC-CAAA------AATGTGTGACGACGAGGTTGCCGCTCTTGTTGTGGACAATGGATCCGGAATGTGCAAGGTATACTTTTTAAGGTTTTTTAAG-ATTGGATTAGATTAGATTCTAGTtagatttgaattttaaatgtaattt
i caeJap4.Scaffold17934 I 1594 C 0

a score=-11519.000000
s ce10.chrX              4960731 60 + 17718866 TAAAACAATATTA------TGCAATCTTAACTGCTCTAGA------AACATTT-----GAATATAAGATTTAGAAAT
s cb4.chrX              10298002 52 + 21540570 Taggaaaatttca------taataCTTCGGCTTCATTGGg-------------------cctaaaaaatttcgaaat
i cb4.chrX              I 11 I 82
s caeRem4.Crem_Contig0   1826305 36 -  4500979 -AAGAGAATCTCT------AGATA------CCGTATTAGG-------------------AATAGAAAA---------
i caeRem4.Crem_Contig0  I 10 C 0
s caePb3.Scfld02_0       3210364 33 +  4147112 TAGGATGGGCTAG------GAACACTACA-CTTTTTTGGG-------------------------------------
i caePb3.Scfld02_0      I 25 I 6
s caeJap4.Scaffold17934   369255 68 +   591668 taacaaaattttatATATGTacaatttcgaacattttacattttcccacatttaaataacacaaaaaa---------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    155232 181 -   201088 I

a score=-2786.000000
s ce10.chrX              4960791 62 + 17718866 TTTGGAAAATTTTATTTTGTTAGTTTT-AACTGCGCTTATTCCAACTC-CATGTCTCAAATTTA
s caeRem4.Crem_Contig0   1826341 57 -  4500979 --TGGGAACTCctacttttgaattttcaaaccaCTTGGGTACTAACAG-----TTTTTGGCCTA
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0       3210403 61 +  4147112 TTTTAGGCCTtctagttcttcttcttc---cttcttcaaaactaACTGACGCATCTTTTCTTTA
i caePb3.Scfld02_0      I 6 I 3
s caeJap4.Scaffold17934   369323 55 +   591668 ttcaaaaactt----tttttttgttgc---ctgcTCTTTTTTCTACTT-CAT-TTCCATATTCA
i caeJap4.Scaffold17934 C 0 I 3
e cb4.chrX              10298054 82 + 21540570 I
e caeSp111.Scaffold409    155232 181 -   201088 I

a score=-5619.000000
s ce10.chrX              4960853 12 + 17718866 CTTT-------------------TCATTTGG
s cb4.chrX              10298136 12 + 21540570 CGTT-------------------TCACTTTT
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   1826410 20 -  4500979 CTTT-----------TGGAACTATTACTTTT
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0       3210467 29 +  4147112 CCTTCCATAcgaaaatgaaactaaagCAG--
i caePb3.Scfld02_0      I 3 I 16
s caeJap4.Scaffold17934   369381 12 +   591668 CTTT-------------------TCCCCACG
i caeJap4.Scaffold17934 I 3 C 0
e caeSp111.Scaffold409    155232 181 -   201088 I

a score=294037.000000
s ce10.chrX              4960865 1177 + 17718866  
s cb4.chrX              10298148 1301 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1826430 1150 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold409    155413 1167 -   201088  
i caeSp111.Scaffold409  I 181 I 6
s caePb3.Scfld02_0       3210512 1165 +  4147112  
i caePb3.Scfld02_0      I 16 I 6
s caeJap4.Scaffold17934   369393  941 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-13625.000000
s ce10.chrX              4962042 53 + 17718866 TGTACAAATGCAATGGTCATCA-----------GGGACTT-TCATCATCAAAATGTCCCCCTTCC
s cb4.chrX              10299453 53 + 21540570 ----GGTGGTGGTGGGTCGCCAGCACTAATTTCGAATCCt--catt--caaatt----caattcC
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold409    156586 29 -   201088 -----GAAGGGATGGGTCATCA-----------GAGTCCC-AAACA-------------------
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3211683 20 +  4147112 -------------TGGTCATCA-----------GGGGTCT--TACT-------------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   370334 35 +   591668 TATGAAAGTGcatttaaattca-----------aattcccattgTT-------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1827580 26 -  4500979 I

a score=2087351.000000
s ce10.chrX              4962095 2490 + 17718866  
s cb4.chrX              10299506 2520 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1827606 2450 -  4500979  
i caeRem4.Crem_Contig0  I 26 I 464
s caeSp111.Scaffold409    156615 2505 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3211703 2395 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   370369 2380 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=90.000000
s ce10.chrX              4964585 1 + 17718866 T
s cb4.chrX              10302029 1 + 21540570 t
i cb4.chrX              I 3 I 1
s caeSp111.Scaffold409    159120 1 -   201088 G
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3214098 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 1206
s caeJap4.Scaffold17934   372749 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1830056 464 -  4500979 I

a score=1588.000000
s ce10.chrX              4964586 21 + 17718866 TTAGAAGGTGAG---TTTTTTTAA
s cb4.chrX              10302031 24 + 21540570 tggaaatgttgGAAGTTTTTGTAA
i cb4.chrX              I 1 I 1462
s caeSp111.Scaffold409    159124 24 -   201088 TCACACAGTCAGATTTGTTTTTaa
i caeSp111.Scaffold409  I 3 I 2
s caeJap4.Scaffold17934   372750 18 +   591668 ---ACATATGAG---tttttttAA
i caeJap4.Scaffold17934 C 0 I 97
e caePb3.Scfld02_0       3214099 1206 +  4147112 I
e caeRem4.Crem_Contig0   1830056 464 -  4500979 I

a score=-5422.000000
s ce10.chrX              4964607 901 + 17718866  
s caeSp111.Scaffold409    159150 771 -   201088  
i caeSp111.Scaffold409  I 2 C 0
e caePb3.Scfld02_0       3214099 1206 +  4147112 I
e caeJap4.Scaffold17934   372768  97 +   591668 I
e cb4.chrX              10302055 1462 + 21540570 I
e caeRem4.Crem_Contig0   1830056 464 -  4500979 I

a score=313.000000
s ce10.chrX              4965508 2 + 17718866 GA
s caeRem4.Crem_Contig0   1830520 2 -  4500979 GA
i caeRem4.Crem_Contig0  I 464 C 0
s caeSp111.Scaffold409    159921 1 -   201088 -a
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3214099 1206 +  4147112 I
e caeJap4.Scaffold17934   372768 97 +   591668 I
e cb4.chrX              10302055 1462 + 21540570 I

a score=1643.000000
s ce10.chrX              4965510 24 + 17718866 ATTGGAATTCATTTAATTTTCAAT
s cb4.chrX              10303517 24 + 21540570 ATTAAAACATAATCCGCTTCCGAT
i cb4.chrX              I 1462 C 0
s caeRem4.Crem_Contig0   1830522 19 -  4500979 -----ATCAGAATCCGCTTCCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    159922 24 -   201088 agaagattgaatTTTGTTTCCTGT
i caeSp111.Scaffold409  C 0 I 1
e caePb3.Scfld02_0       3214099 1206 +  4147112 I
e caeJap4.Scaffold17934   372768 97 +   591668 I

a score=25773.000000
s ce10.chrX              4965534 123 + 17718866 TGAACCTTT---GAAAAGTCCAA----------------CATCCGTCT--CTTTGTT------TCCT-----GCCTCAATA--TCATCAGATATTCATAAATCTTTTTTTTTCGCTGCGAAA---CCTTTCCCC----CCTCCTCCTCCT-------TCTT-TTATTGTTGG
s cb4.chrX              10303541 155 + 21540570 TGAACTTAT--GAAAAAGTCCAATCTGTTCCCCGTCTT-GGCCTAGCTTGCTATTGT------TTCTTG---TTCGCTCTGATTCATCAACTATTCATAAATCTTTTCTTTCT-GCCAGAAA---CCTTTTTTCCTCTTTGCTCCCGTCCTCGTCGAGCTC-TTATTGTTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1830541 140 -  4500979 TGAACTGAT--GAAAAAGTCCAGTCAGCCTACATCCTTCCATCTAGTT--CTATTGT------TTCT-----CCCGCTCTGATTCATCAACTATtcataaatcttttttctc--aaaggaAA---CCTTTTTGC----TTTCTCCTTTCT-------GCTC-TTATTGTTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    159947 124 -   201088 TGAACTTTacgaaaaaagttcaa----------------caTCCGACATCCGTGGGT------TTTCCAGGGATCTGATTCATTCATCAAGTATtcataaatcttttttctt--tctcgaaA---CCCTTTTTG----TTTCCTCTT----------GCTC-------TTGG
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3215305 137 +  4147112 TGAACTTTTGCGAAAAAGTCCAA----------------TATCCAACATGCGTTGGTTGGTTCTTTTCA---ATCTGATTCATTCATCAACTAttcataaatcttttttctc--tcgcgaaaaactcttttttg----tttcttctt----------gcTCCTTATTGTTGG
i caePb3.Scfld02_0      I 1206 C 0
e caeJap4.Scaffold17934   372768  97 +   591668 I

a score=69625.000000
s ce10.chrX              4965657 80 + 17718866 TAAGAATCAATCATATCC----------AGCGGCTCTTTCTATTGAAATGCATCGAAAC--GCTTGG--AATGATTGATGATT-GAGAA--TT---TTGA
s cb4.chrX              10303696 96 + 21540570 CAGGAATCAATCATATCCTCATACCGCTTGCGGCTATTTCTATTGAAATGCATCAAAACGAGCGTCG--AATGATTGATgattcgagaa--ttttcgaga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1830681 81 -  4500979 TAAGAATCAATCATATCCCC---------GCGGCTCTTTCTATTGAAATGCATCGAAAC--GCGTTG--AATGATTGATGATT-GCGAA--TT---GAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    160071 82 -   201088 TAAGAATCAATCATATCC--------TTCGCGGCTCTTTCTATTGAAATGCATCGAAAC--GCTTCG--AATGATTGATGATT-GCGAA--TT---GTGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3215442 88 +  4147112 TAAGAATCAATCATATCCCC----CTCTCGCGGCTCTTTCTATTGAAATGCATCGAAAC--GCGTCG--AATGATTGATGATT-Gcgaatttt---gtag
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   372865 81 +   591668 TAAGAATCAATCATATCT----------GGCGGCTCTTTCTATTGAAATGCATCGAAAC--GCGTCGACAGTGATTGATGTTGGGAGAA--TT---GA--
i caeJap4.Scaffold17934 I 97 I 42

a score=-30551.000000
s ce10.chrX              4965737 227 + 17718866 AATTGTATGACAGAACGTTCTAGTGGTGGTGCTGATTTTTGATTGTTTTGCCTCTATT-GGAGAAGTAGAAGTGGAAGAGAAGGGAAGAGGAAAGGATGAGTGATGATGCAAATTTGTGGAGCTCCTTGGCATTGTAACATTACGATAAGAAGCTGCGGACCTCCCTCCCTTCTCCAACAATTC------ACAAATGAAACAATAAAACAAAAGGCCCCGGGAACCACGATCTG
s cb4.chrX              10303792 112 + 21540570 aattgtTTGACAGAA---------GGTGATGCTT------GATTGT----TTCAAACA---CGATT----------------GGAATCAGG-----------GAAAAC-----------GACAATAA---AATTTAGGGGTGTTTTGAGGAT----------------------TGGTTAATTT------TTATAGGCA-------------------------------TTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1830762 145 -  4500979 GATTGTACGACAGGA---------GGTGGTTCGT------GATTGTTTGGTTCATACAGAGGGATTGA--------------GAAAACAGGGATTTTAGAAAGAAAAC---------TAGACATTTT---AATTGTAAAGTCATAACAAAAT----------------------AAGACaggtttttgaattaaaaGCAGTTC--------------------------TTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    160153 159 -   201088 AATTGCATGACAGAA---------GGTGATGCtt------ggctcttttttctttgta-agGGACTGAG------------TGGCAAGGGGAGATTGAAGGAGATTGCGT-CTTAGACAGAAATCCT---AGATCTAATGTTGTTACCTCATGCTGCA-------------CTTTTGCAAAATC------CAATAAGCAATACA------------------------GGTCTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3215530 140 +  4147112 aattgtATGAGAGAA---------GGTGGTATGGA-----GGATGTTTTGCTCCTGTA-GGGA-------------------GGGAatgaaaacatacaaaaaagtgtg--------caAAAAGCTT------TTGAGAGTGAAAATGTGAAGATGCa----------------ttgaaagttt------tctcaagaaattgg------------------------aaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   372946  42 +   591668 I

a score=136938.000000
s ce10.chrX              4965964 282 + 17718866 ACTCACTTTGACTTGTTTGTACCCGCATCTACATTGACAGGTTCCAAAGCGACATTCTGCTGATTGAATGCACTGCTTGTTCGAATAGCAGCGGGCACCGAGTTGTACCTGAAAATCAAAA---AATTACACAAAA----AAATCTGGCAA-TTTTCTCACTTTTGCCAGGCATCTATCGTTACTAGCGACTTCTTCGAGGGTACAGTCTTTGGTGCACGTTAAGAATCTCTCGTCGTTATTCTGGAATA-----ATTT--------GTGATTTT--TGGGAATTTGAGAAAAAACAATTTGCTG
s cb4.chrX              10303904 279 + 21540570 TCTCACCTTGACTTGCTTGTAGCCACATCTGCACTGACAGGTTCCAAATCGACACTCCGCTGATGGAATGCACTGGTTATTCGAGTAGCAACGACTTCCCAGTTGTACCTGTAGAAATATC---AATTTACGGAAATGAAAAGCATTGAAA---GTTTTACTTTTGCTAAACATCTATCATTGCTGGCAACTTCTTCAAGTGTACAATCTTTCGTGCATGTTGGGAATCTTTCGTcgttgttctgaaa-------attcaa------aaaatcaa--ctggatTT-GTTGAAATACAATTT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1830907 284 -  4500979 ACTCACCTTAACCTGTTTATAACCACATCTACATTGACAAGTACCAAAACGACATTCAGCAGAAGGGATGCACTGATTATTGGAGTAACATCTGCTTCCAAGTTGTACCTGAAAAAAGACA---GCCTGA--GAAAAGGAAAGTATTTTAA----TTTTACCTTTGCCAAACATCTATCGTTGCTGGCAACCTCTTCAAGCGTGCAGTCTTTTGTGCACGTGGGGAATCTCTCATCATTGTTCTGGAATAATAACATTAAACATGTGAAAATCAGTTCTGGAATC-----AAGAACAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    160312 272 -   201088 ACTCACTTTTACTTGCTTGTAGCCACAGCGACACTGACAGGTACCGAAACGACATTCTGCAGACGGGATACATTGATTGTTAGAGTAGCATCTACTTCCCAGTTGCACCT------AAACG---ATCTCAATGAAATCAGCTCGGTGAAGA-AGGACTTACTTTGGCTAAACATCTATCATTACTTGCTACTTCTTCAAGAGTACAGTCTTTGGTACACGTTGGAAACCGTTCGTCATTGTTCTGGAACAAT---ATTA--------TAGATTTTTAT---AAAT-----GACTATAAGAC----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3215670 278 +  4147112 actTGCCTTCACTTGCTTATATCCACATCTACATTGACAGGTACCAAATCGACACTCAGCCGATTGAATACATTGATTATTGGAATAGCATCGAGCTCCAAGTTGCACCTG-----AAACAAATACTTTTGTGTTATTGgagttttgaatagaatatttACCTTTGCGAGACATCTATCATTGCTTGCTACTTCTTCAAGTGTACAATCTTTCGTGCATGTCGGGAACCGTTCATCgttgttctgaa--------attt--------gagattaGTATTCGAATG-----GAGTAGAAAAT-CAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   372988 273 +   591668 acacACCTTAACTTTTTTGTATCCACAAAGACACTGGCAAGTTCCAAATCGACACTCCGCAAACTGTGTGCACTGCTTGTTTGAGAAGCAACGACTTCCGAGTTGGACCTGGAAAGAATTAA--AGTTCTGGGGGATCGCAAAAGTATCAA-----ATCACTCTGGCAAGACATCTGTCGTTACTGGCAACTTCTTCAAGGGTGCAATCTTTGGTGCACGTTGGGAATCGATCGTCGTTGttctaaat-------tttt--------tgggttttttaaataaaa-----aagtttagtg-----
i caeJap4.Scaffold17934 I 42 I 815

a score=36818.000000
s ce10.chrX              4966246 148 + 17718866 CGAACCTCGTGATATCCAAGTTTGCATTGACAAGAGCCTAGCGTGCAGGACATTGTGATTCCTCCCTCGCACTGA-------AAATTCAAAATT-------------TAGATGAAAATATGATATTTGTAGTATACatattt----------ttaaa---------aaatatataaaaaatataaaa
s cb4.chrX              10304183  82 + 21540570 GGTACCTCATGATATCCTAGCTTACATTGACAGCTTCCCAATGTGCAAGACATCGTAATTCCGCCTTCACACTG--------AAATATAT-------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1831191  80 -  4500979 ---ACCTCATGGTATCCAAGTTTGCATTGACAGCTTCCCAATGAACATGACATAGTGATTCCACCTtcacactga-------aaattgaa-------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    160584 107 -   201088 -GGACCTCATGATATCCAAGTTTGCATTGACAAGTTCCTAGATTGCAGGACATTGTGATACCACCTTcgcactgaaa-----aaattcaaaaat--------------------------gatac------------------------------------------------tagaagagatgaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3215948 102 +  4147112 AGTACCTCATGATATCCAAGTTTACATTGACAAGATCCTAAGTTGCAGGACATTGTGATTCCACCTTCGCACTGAAATCGCGTGATTCAAAGTT-------------------------------------------------------------------------------------ATATAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   374076 182 +   591668 CAAACCTCGTGGTAACCAAGTTTGCACTGGCAAGTTCCAAGGGTGCAGGACATTGTGATTCCACCTTcacactgaaa-----aaaattgtttttttttggtctgaattAGATGCCGCTATAACACCACAAGCTTGGATATATGGACATCCAATTAGAACGCTtgttaattattttaaaagtatACAT
i caeJap4.Scaffold17934 I 815 C 0

a score=630.000000
s ce10.chrX              4966394 17 + 17718866 ------tgtatataaatataaaa
s caeJap4.Scaffold17934   374258 23 +   591668 TTATTTTGTAAATAGCTCTAAAA
i caeJap4.Scaffold17934 C 0 I 205
e caePb3.Scfld02_0       3216050  0 +  4147112 C
e cb4.chrX              10304265  0 + 21540570 C
e caeSp111.Scaffold409    160691  0 -   201088 C
e caeRem4.Crem_Contig0   1831271  0 -  4500979 C

a score=-16676.000000
s ce10.chrX              4966411 120 + 17718866 tGCTTTTGCTGAAATTCGGCTTCTCATACAATTTCTCAACAATTTTTAAGCTTCAATAGACTAACTATGGTTGTAAAATACAGTGTTTCAGACTCCTCAAACATTTTTTGCATCCTTTTC
s cb4.chrX              10304265  33 + 21540570 ---------TAAGatttagtc-------------------------------------aatttttt----------------gcttttc-ga-----TAA-----------------C--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1831271  61 -  4500979 ---------taatgtTCGTTCTC-----------CTCATTA----------------TGGCTAGTT----------------GCTTTTCAga-----taaactttttttacaaTGTCT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3216050  20 +  4147112 -----------------------------------TCAAAA----------------AGTCTAAAT----------------ATCTT---------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   374281 205 +   591668 I
e caeSp111.Scaffold409    160691   0 -   201088 C

a score=-5955.000000
s ce10.chrX              4966531 66 + 17718866 AGAAGTTTGGTTGTGTAGCTTGGTTTTTAAAGCCATTTAAAAACCGTTATTCCTCCTTTGAGCATG
s cb4.chrX              10304298 10 + 21540570 AGAAATCTAA--------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1831332  6 -  4500979 AGTAAT------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    160691  6 -   201088 agatGT------------------------------------------------------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3216070  0 +  4147112 C
e caeJap4.Scaffold17934   374281 205 +   591668 I

a score=469319.000000
s ce10.chrX              4966597 579 + 17718866  
s cb4.chrX              10304308 570 + 21540570  
i cb4.chrX              C 0 I 1066
s caeRem4.Crem_Contig0   1831338 570 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409    160697 571 -   201088  
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3216070 579 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   374486 604 +   591668  
i caeJap4.Scaffold17934 I 205 I 45

a score=669.000000
s ce10.chrX              4967176 4 + 17718866 TGAA
s caeRem4.Crem_Contig0   1831909 4 -  4500979 tgaa
i caeRem4.Crem_Contig0  I 1 I 49
s caeSp111.Scaffold409    161270 4 -   201088 tcaa
i caeSp111.Scaffold409  I 2 I 115
e caePb3.Scfld02_0       3216649 0 +  4147112 C
e caeJap4.Scaffold17934   375090 45 +   591668 I
e cb4.chrX              10304878 1066 + 21540570 I

a score=-2168.000000
s ce10.chrX              4967180 356 + 17718866 TAGATGAAGTAGCGTCATTGATATTTATACCTAAATACACTCTGAAACTTTTCAAAATAGTTTTTTTTTTCAATTTTCAAATGCCGACCAGTAATCCTACAAAA-TCAGTCAGAGCCGCAAGTTCTCCCAATGTTTTTCATCAAAATTTAGT-----AGAAGACTATAAAACATAGTTttcatatcaattcaagcaacaggaaaaatgctcaaaaattgtctgaaagttgggattttcagtgcaataatttgtgggatttttttcagtcagt-ttacatttttctaacaatttctaagcgtctttcgaactatttcaactaaaataaaaaataattttcaactgaattaaatatttagactta
s caePb3.Scfld02_0       3216649 260 +  4147112 TTTACAATGTGAggtt------------------------------aattttcaa----------------aagttgcaGAAGC-------TAGTCTAGCAAAATTCAGTC--AACTGGAAATGTCTATAATTGTTctaggaaaaaatgagtttctgaaaagttgGTATGATGTGTTCTTTGGGTT-----------------------------TTTAGCTGTGAGTT----CATTTGGTACAA-AATCTGTTGAATTGATAT-AGTCTTTATCACATCGTTTCAGA----TTGAAAGATCTGTGAAGCTATTTCTGTAAAAGTA---------TCTTCacagttccaaaaatttcgaatta
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold17934   375090  45 +   591668 I
e cb4.chrX              10304878 1066 + 21540570 I
e caeSp111.Scaffold409    161274 115 -   201088 I
e caeRem4.Crem_Contig0   1831913  49 -  4500979 I

a score=0.000000
s ce10.chrX              4967536 57 + 17718866 ctcgatcactaaattttgaagaaaaatattAACATAATCCCACTCTTGCTTTTCTTT
e caePb3.Scfld02_0       3216909 31 +  4147112 I
e caeJap4.Scaffold17934   375090 45 +   591668 I
e cb4.chrX              10304878 1066 + 21540570 I
e caeSp111.Scaffold409    161274 115 -   201088 I
e caeRem4.Crem_Contig0   1831913 49 -  4500979 I

a score=-866.000000
s ce10.chrX              4967593 114 + 17718866 TTGTAGAACACCCCCTGCTTCAATTCAAGTAATTTGCCAGTTTTTCATGTTTTAGACCAATTCTAGTTGACCTTCACAATTTCAATATCTAGGTATATTGTTTTATAACTATTT
s caePb3.Scfld02_0       3216940  56 +  4147112 TTGTCGAAAAcgtcttgtttttgttt----------tcagtaatTTACGTTTTCG------------------------------------------TTTCTTTAGAA------
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold17934   375090  45 +   591668 I
e cb4.chrX              10304878 1066 + 21540570 I
e caeSp111.Scaffold409    161274 115 -   201088 I
e caeRem4.Crem_Contig0   1831913  49 -  4500979 I

a score=906.000000
s ce10.chrX              4967707 5 + 17718866 TTCTC
s caeRem4.Crem_Contig0   1831962 5 -  4500979 ttttc
i caeRem4.Crem_Contig0  I 49 C 0
s caePb3.Scfld02_0       3216996 4 +  4147112 -TTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   375090 45 +   591668 I
e cb4.chrX              10304878 1066 + 21540570 I
e caeSp111.Scaffold409    161274 115 -   201088 I

a score=910.000000
s ce10.chrX              4967712 1 + 17718866 A
s cb4.chrX              10305944 1 + 21540570 A
i cb4.chrX              I 1066 C 0
s caeRem4.Crem_Contig0   1831967 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161389 1 -   201088 a
i caeSp111.Scaffold409  I 115 C 0
s caePb3.Scfld02_0       3217000 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   375090 45 +   591668 I

a score=94844.000000
s ce10.chrX              4967713  97 + 17718866 CTCACTGGCTGTCTTTCTCACACGGTTGCTGATAATGGGCAACACGAGTGCATTCGACGCCATAAAGCTGCTGACCAACTGGACACACTG---AAAATCC
s cb4.chrX              10305945 100 + 21540570 CTCACTGGCTGTCCTTTTCACACGGTTGCATATAATGAGCGACACGCGTACATTCGACACCATACAATTGTTGACCAGCCGGACACGCTGGAAAAAATCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1831968  97 -  4500979 ctTACTGGCTGTCTTTTTCACATGGTTGCATGTAATGAGCGACACGTGTACATTCTACTCCATACAATTGTTGGCCTGCTGGGCACGCTG---AAAATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161390  96 -   201088 ctcACTGGCTGTCTTTTTCACAAGGTTGCATATAATGAGCTACCCGTGTACATTCTACTCCATATAATTGCTGCCCAGCAGGACATGCTG----AAAACC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217001  97 +  4147112 CTCACTGGCTGTCTTTTTCACATGGTTGCATATAATGAGCGACCCGTGTACATTCTACTCCATACAATTGTTGACCAGCAGGGCATGCTG---AAAAACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   375135  97 +   591668 CTCACTGGCTATCTTTTTCACAAGGCTGCTGGTAATGCGCCACTCTTGTGCATTCGACACCATAAAGTTGCTGGCCAGCAGGACAGGCTG---AAAATCC
i caeJap4.Scaffold17934 I 45 I 15035

a score=-3490.000000
s ce10.chrX              4967810 31 + 17718866 ACTCAT------------CCTTCACAAATCTTTAGACATCAGC
s cb4.chrX              10306045 32 + 21540570 ATTCATCAAACTCAGTTTTCTTCCTAAACCAT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1832065 30 -  4500979 ACTCATC---------TTTTCTccgaaactttca-aaaa---c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161486 30 -   201088 ACTCAT----------TCCTCTTCCAAACTTTTTGAGAT---G
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217098 29 +  4147112 ACTTAT----------TCTCTCTTTAGACTTCTT-AAAT---C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   375232 15035 +   591668 I

a score=336107.000000
s ce10.chrX              4967841 393 + 17718866 TTCACTTACGAACAACGCATTTTCCGTCAACAATACTACCACCCCAGCACTCGCATTTACCATCTCTGCACAATAAGGGAGGCTTGCAATCGCGTTGACAGGAATCTCCGATTTTGGCGGGTGCTGAAAGCAAAA-GCTAATTTA---TACAACAAGA-GGCAAAAGACCGGTTCGGTTCGGTGAATCATTTGA--GAACTGTAAGAAG-----TCTAAAACCA-AAGAGACAAAAAAAAAC----------GAGGAAAATTATGATG-----TCACCTAATCGGCAAATTGTCGTTCGTTCATCGATGTCGTATTCTTCAAAGTTTGTGGGGCAGGTACATCGGGAGTTTCTGCACACTGAGTTCATTCCATAGCATTCTTCATCAAATAGGCAGTCACTTCCAATAAGCTTTTCTGAAA
s cb4.chrX              10306077 400 + 21540570 -CCACTTACGAACGACACACTTCCCATCGACAATACTTCCACCCCAACACTCGCATTTACCATCCCGGCACAACAAGGGTGGCTTACAATCGCGTTGACAGGAATCGCCGATTTTGGCGGGTGCTGAAAGCGAAATGCTAATTTAGTGTATTATT----GGTGGGGGAC-----CGGTTTGATGAATCATTC-A--GAACTGTAAGAGGGTTCTTCTAG------gagaagcaacaaaaaaacgagaatacaaaaaattataatgatGGTG--TCACCTAATCGGCATATTGTCGTTCGCTCGTCAATGTCGAATTCCTCGAAATTGGTTGGGCAAGTGCATCGGGAATTTCGGCATACTGAGTTCATTCCATAGCATTCTTCGTCGAATAGGCAGTCACTACCAATAAGTTTCTCTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1832095 371 -  4500979 accACTTACGAACAACACACTTTCCGTCGACAATACTACCACCCCAGCACTCGCATTTACCATCTCTGCACAATAAGGGAGGCTTACAATCGCGTTGACAGGAATCGCCGATTTTAGCGGGTGCTGAAAGCAAAA-GCTAATTTA---TACAA--------TAAGAGAC-----CGGTTTGATGAATCATT--G--GAACTGTAAGAGg-----tctag------aaaaaatgaagtaaaaa-----------------ataatgatgtcA-CTCACCTAATCGGCAGACAGTAGTTCGTTCGTCAATGTCATATTCTTCGAAGTTAGTGGGACAGGTGCATCGGGAGTTCCGACATACTGAGTTCATTCCATAACATTCTTCATCGAATAGACAATCGCTTCCAatgagtttttctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161516 366 -   201088 TTCACTTACGAACAACACACTTTCCGTCAACAATACTTCCACCCCAACACTCGCATTTTCCATCTCTGCACAATAAGGGTGGCTTACAATCGCGTTGACAGGAATCGCCGATTTTGGCGGGTGCTGAAAGCAAAA-GCTAATTTA---TACAGTC----------AGAC-----CGGTTTGGTGAATCATT--G--AAACTGTAAGAGG-----TCTAG------AAAAACcgaagacaaaa----------------aataatgatg-----tCACCTAATCGGCAGACTGTCGTTCGTTCGTCAATATCGTATTCTTCAAAGTTAGTCGGGCATGTGCATCGGGAGTTCCGGCACACTGAGTTCATTCCATAACATTCTTCGTCAAATAGACAGTCGCTCCCAATaagtttttctggaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217127 374 +  4147112 TCCACTTACGAACAACACACTTTCCGTCAACAATACTTCCACCCCAACATTCGCATTTTCCATCTCTGCACAATAAGGGTGGCTTGCAATCGCGTTGACAGGAATCACCGATTTTGGCGGGTGCTGAAAGCAAAA-GCTAATTTA---TACAATT----------AGAC-----CGGTTTGGTGAATCATT--GACAAACTGTAAGAAG-----TCTAGAACAGAAAAAGCCaagtaaaaaa----------------tataatgatg-----TCACCTAAACGGCAGACGGTCGTTCGCTCGTCAATGTCGAATTCTTCAAAGTTGGTTGGACATGTGCATCGGGAGTTCCGACAAACTGAATTCATTCCATAGCATTCTTCATCAAATAAGCAGTCACTTCCGATaagtttctctgaaa
i caePb3.Scfld02_0      C 0 I 401
s caeJap4.Scaffold17934   203901 379 -   591668 TTAACTCACGAACTACACACTTTCCATCGACAATACTGCCACCCCAGCACTCGCATTTTCCGTCTCTGCACAACAAAGGTGGCTTACAATCTCTCTGGCAGGAATCTCCAATTTTTGCGGGGGCTAAAATCAAAA-GATAAATTA---TATACATATACATTAAAAATC-----CGGTTTT-TGAAAGAAT--G--AA--CGTATGAGT-----CACAA------AATAGCtgttaaaaaaa---------------caagcatGATGTCACCTCACCTAATCTACAAATCGTCGTCCGCTCATCAATATCGTACTCTTCAAAGTTGGTAGGACATGTGCATCTAGAGTTTCGGCATACCGAGTTCATTCCATAGCATTCTTCGTCAAACAAGCAGTCACTGCCGATTAGTTTTTCTGAAA
i caeJap4.Scaffold17934 n 15035 I 64

a score=-2588.000000
s ce10.chrX              4968234 20 + 17718866 --------AAAATA--------AACATATTTTTGTT
s cb4.chrX              10306477 23 + 21540570 GA----AGtaaaaa---------taagattttggtt
i cb4.chrX              C 0 I 153
s caeRem4.Crem_Contig0   1832466 36 -  4500979 aatgacaggaAATATTTaggatttcagattttagtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161882 12 -   201088 ----------------------aaaaggtttt--tt
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3217501 401 +  4147112 I
e caeJap4.Scaffold17934   204280 64 -   591668 I

a score=-3480.000000
s ce10.chrX              4968254 52 + 17718866 GAAG-TGTGG---------GGGACTGAGAAAA---CT----GCTTTCCTATCTATAAATTATGATAGTT
s caeRem4.Crem_Contig0   1832502 45 -  4500979 -----tttgtacGGTAACCTGAACAAAACTGA---CTACTAGTTTATTTATGT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    161894 60 -   201088 aaaattttgg---------cgtatgaaattaaaatcttttcgtttttatttttcgagattacagtattt
i caeSp111.Scaffold409  C 0 I 190
e caePb3.Scfld02_0       3217501 401 +  4147112 I
e caeJap4.Scaffold17934   204280 64 -   591668 I
e cb4.chrX              10306500 153 + 21540570 I

a score=712.000000
s ce10.chrX              4968306 14 + 17718866 CAATCATATTAAAG
s caeRem4.Crem_Contig0   1832547 14 -  4500979 CAACTATTTTGAAG
i caeRem4.Crem_Contig0  C 0 I 255
e caePb3.Scfld02_0       3217501 401 +  4147112 I
e caeJap4.Scaffold17934   204280 64 -   591668 I
e cb4.chrX              10306500 153 + 21540570 I
e caeSp111.Scaffold409    161954 190 -   201088 I

a score=0.000000
s ce10.chrX              4968320 879 + 17718866  
e caePb3.Scfld02_0       3217501 401 +  4147112 I
e caeJap4.Scaffold17934   204280  64 -   591668 I
e cb4.chrX              10306500 153 + 21540570 I
e caeSp111.Scaffold409    161954 190 -   201088 I
e caeRem4.Crem_Contig0   1832561 255 -  4500979 I

a score=302.000000
s ce10.chrX              4969199 2 + 17718866 TT
s caeSp111.Scaffold409    162144 2 -   201088 TC
i caeSp111.Scaffold409  I 190 C 0
s caePb3.Scfld02_0       3217902 2 +  4147112 tt
i caePb3.Scfld02_0      I 401 C 0
e caeJap4.Scaffold17934   204280 64 -   591668 I
e cb4.chrX              10306500 153 + 21540570 I
e caeRem4.Crem_Contig0   1832561 255 -  4500979 I

a score=207.000000
s ce10.chrX              4969201 1 + 17718866 G
s caeRem4.Crem_Contig0   1832816 1 -  4500979 G
i caeRem4.Crem_Contig0  I 255 C 0
s caeSp111.Scaffold409    162146 1 -   201088 A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217904 1 +  4147112 g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   204280 64 -   591668 I
e cb4.chrX              10306500 153 + 21540570 I

a score=910.000000
s ce10.chrX              4969202 1 + 17718866 A
s cb4.chrX              10306653 1 + 21540570 A
i cb4.chrX              I 153 C 0
s caeRem4.Crem_Contig0   1832817 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    162147 1 -   201088 A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217905 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   204280 64 -   591668 I

a score=1102387.000000
s ce10.chrX              4969203 1363 + 17718866  
s cb4.chrX              10306654 1395 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1832818 1360 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold409    162148 1319 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3217906 1359 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   204344 1326 -   591668  
i caeJap4.Scaffold17934 I 64 C 0

a score=-15831.000000
s ce10.chrX              4970566 41 + 17718866 -------ATAATAGACGTTGATTTGAAGGTCATG--AGACT------TTAAAAGAA
s cb4.chrX              10308049 32 + 21540570 ----------ttcaacttt--tcttaTGAGAATA--TAGCA------GCTAA----
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold409    163467 34 -   201088 ---------attcaaagta--tTGAAGAATAATA--TGTTT------TCCATG---
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3219266 44 +  4147112 -------Gtatttggtttc--tttttgtgTTCTGGTTGTTTCAAAGATCTGAA---
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   205670 39 -   591668 AGAACAATTATTGAGAAGC--Tgttat--ttata--tattt------atCA-----
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1834178 39 -  4500979 I

a score=470231.000000
s ce10.chrX              4970607 1140 + 17718866  
s cb4.chrX              10308085 1213 + 21540570  
i cb4.chrX              I 4 I 31
s caeRem4.Crem_Contig0   1834217 1180 -  4500979  
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold409    163501 1159 -   201088  
i caeSp111.Scaffold409  C 0 I 5
s caePb3.Scfld02_0       3219310 1167 +  4147112  
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   205709  998 -   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-4038.000000
s ce10.chrX              4971747  45 + 17718866 -------GTCACTTGTTGGGATGA---------------------------------------GTTTGTAGTTCTTCTCCTAGATGTTCTT-----------------------------
s caeRem4.Crem_Contig0   1835397  54 -  4500979 ---------CTCTAACGAGGATGAGATGTG-------------------------ATGAGTGTGTGTGTAGTTCTC---CTAGTAGTTTTC-----------------------------
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold409    164665  54 -   201088 -------AACTCTAAGGAGGATGAGAt----------------------------gagtgtgtgtgtgtagTTCTT--GCCAGTAATCTTC-----------------------------
i caeSp111.Scaffold409  I 5 C 0
s caePb3.Scfld02_0       3220480  51 +  4147112 -------AACTCtaaggaggatga-------------------------------ggatgagtGTGTGTAGTTCTT--GCCAGTAGTTCTC-----------------------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   206707 115 -   591668 ACAAATCGACAC--GTCGAGATGAGATAGGACTAGAAGGTTCTGGCAGGTGCGGCGGGGGAaagtaaatgattttt---ttgctaattctGAATACCCTTATGTActgtataaagcgctg
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10309298  31 + 21540570 I

a score=-13134.000000
s ce10.chrX              4971792 42 + 17718866 CAAATTTCT--TTTCTCGAAATTT---TGTTCA-----GTGAGAATTGAGAG
s cb4.chrX              10309329 40 + 21540570 AAGGTCtct--tgtttcgaaaattttctcgtAC-----AATcgaaat-----
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   1835470 36 -  4500979 AAGATATCCAATGTTTCGAAAAGT------GAG-----GAGGGAAAG-----
i caeRem4.Crem_Contig0  I 19 I 104
s caeSp111.Scaffold409    164719 28 -   201088 ----------------CGAGactt---tcgaga-----gaaaaaaacgaggg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3220531 33 +  4147112 ----------------CGAGAATC---CCGTGATCTTCGGAGGAAATGAGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   206822 33 -   591668 ----------------caaattcg---ctttAATCGCAGTGAAAAAAGAGTG
i caeJap4.Scaffold17934 C 0 C 0

a score=964.000000
s ce10.chrX              4971834 2 + 17718866 AA
s cb4.chrX              10309369 2 + 21540570 aa
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold409    164747 2 -   201088 AA
i caeSp111.Scaffold409  C 0 I 175
s caePb3.Scfld02_0       3220564 2 +  4147112 AT
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold17934   206855 2 -   591668 AA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1835506 104 -  4500979 I

a score=-24821.000000
s ce10.chrX              4971836 107 + 17718866 -----------------CTCATACAAGTTTCAAAAACCTCAAAC--------------------------------------------------GTAG------AACGTTCTACATGAAATTCGTAACAGGGATCTAGAACTTATC----------AGTACACAT---------------------------AAATACTATGTCT---------------------------------------------AGTGTTAAGAAA
s cb4.chrX              10309379 130 + 21540570 -----------------ttgaagcaaCTGCCAAGTACCTTCAGTTAC----------------------------ACCTGCGAATATATACC--TGAG------AAAACTGGATActaatt-------gaaaattaggaGTGCAAATTCGAATTCGAATTCTAAT---------------------------GGACGCTTT---------------------------------------------CGAATCGGATAAGAAA
i cb4.chrX              I 8 I 1
s caePb3.Scfld02_0       3220604 102 +  4147112 -----------------CTGTTACAAGTTACAAGT-----------------------------------------------------------TGAG-----------TGGATACAATTTTTGTGA-GGGAATTTATAGTCTAGA----------AAACTTGAT---------------------------TGACACCTTTTCTCAATAA-----------------------------------TAAAAAGGGTAATCGA
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17934   206857 260 -   591668 CAATCGGCCATGCCACGCTCTCTCGATtttttgcactctctcgtcgccaacgtggccgcttTGCGAAAGGAGCAAATTTGCAGCTTTTTGCCATTGGGCTCcaccaagtttggtgcaaatatGGTGAAAAGGGTATCAAGATTGGA--CGATTTCTAATTCTTATTTAGTTATGCTCAGTACACggcgctgcaaatgcgctccattagcAAAGTGGATGCGgctgccacgttggcgacgagagagtgtagaaAATTAAGAGA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    164749 175 -   201088 I
e caeRem4.Crem_Contig0   1835506 104 -  4500979 I

a score=-16469.000000
s ce10.chrX              4971943 55 + 17718866 ----ACCTCAAA---CTAG------------AAGCCTCCCATTGCCGTGAAGGT--TGCTTAAAGAT-----------TCACAGTAG
s cb4.chrX              10309510 63 + 21540570 ----GTCTGCAAAAGTGTG------------CAACCACACAGACTctctcaaat--ttctgaaaggtCAAGA------TCCAAACAA
i cb4.chrX              I 1 I 11
s caeRem4.Crem_Contig0   1835610 66 -  4500979 ----ATGTAGAAACGTTTGTTCTATTCCACCCATCTGCATTGTCTTTAGAAAATAATTCTG-----------------CCTGAACAG
i caeRem4.Crem_Contig0  I 104 I 6
s caePb3.Scfld02_0       3220706 49 +  4147112 ----ATCTTCAA---TTTG------------AATCTGCCCATTCGTT---------TATTG-GAAGTCA---------ACTGAATGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   207117 77 -   591668 GCATGGCTCAAAATGCATG----------CCCAGTTCACGGTGCaattggagcgaattcgcagagCTGAGGAAACAATTTCGAATTG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    164749 175 -   201088 I

a score=146874.000000
s ce10.chrX              4971998 441 + 17718866  
s cb4.chrX              10309584 433 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1835682 462 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold409    164924 436 -   201088  
i caeSp111.Scaffold409  I 175 C 0
s caePb3.Scfld02_0       3220755 464 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   207194 488 -   591668  
i caeJap4.Scaffold17934 C 0 I 950

a score=32429.000000
s ce10.chrX              4972439 235 + 17718866 ACGAAAACAAAAAGAACCGAATACACATAA---AAGATAAAGGTGAA--TAGTTCGAACAG--ATATTGTTATAATGGAACGA-TA----------------------------------CAAATAAATAAAGAAAT--------------TTGTAGAAAAGTTATTCATTCACAAATA--TATGTCAAACGGGAAGAGGGGAC------CACGAA-CACAACACAACTGACAAAAATACGAACCTTGTG--AGAAAATGATT----GGGGGGAATTTCACAA----ATCAGGTAGAA-TTGGAATAGGAA
s cb4.chrX              10310017 256 + 21540570 ACGAAAACAAAGAAAG--------AGATAA---AGGCTGAATGGATA--TA--TCGAACAGATATATAATTCGAATGGAACAACCGAAA-------TGGATTGTTTGATCAtgagaaaatcgaagaaaaagagaaaaaaaa-gagttttcgTTGTAGAATCA-T-TTCATTTACAAATG---------AGGGATCTGATGGAAAGGATTGGATAGT-CACAACACAAA-TTTA---ATACAAACCTTGTTAGAAGAGATAACAGTCCAGGAAAAA----AGAG-----CTAGATAGGA-taggaa------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1836144 249 -  4500979 acgaaaacaaagaaaa--------gaagaagagaagataaaagtgag--aa--tagaacag--aTATAATTCAAATGGAACGA-TGAAACGATCGTCGGATTGTTTGATTACA-------CAAAACAAAAGCTGAGA------TGTTTTGCCAGTGGGAACA-T-TTTATTCACAACTGCATAT----AGGGATACTAGGGGAC------CACAATACACAACACAAC-ATT-----TACGAACCTTGTCA-ATGAGAtgata----agaaaatattttacAA-----TTAGGTAAGAGTTGGAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    165360 256 -   201088 ACGAAAACAAAGA--------------------TAGATAAAGGTGGAGGAA--TTGAACAG--ATATAATTCAAGTGGAACGA-TGAAACGATCGCCGGTTCGTTTGatgataaaag---aaaatgaaaaggaaaaaaacacatttgaTACTAGAGGAAAGGGT-TTTATTCACAAATACTTATATGTAGGAGAAATGGGGGAC------CACAAGACACAACACAACTGCCAAATATACGAACCTTGTC--AAGAGATGATG----AGAA---ATTTCACAA----TGAAGATAGGA-TAggaa------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3221219 249 +  4147112 ACGAAAACAAAGA--------------------TAGATAAAGGTGGA--AA--TCGAACAG--ATATAATTCAACTGGAACGA-TAGAAT--------GTTTGTTTGATAATAAAAG----GAatagaatgcaaaaaaaaacatttgttacTAAGGGAAAGATT-TTCATtcacaaataaatatatacGGATAGAGAGAGGGAC------CACGAG--ACgacacaac-acaaaaaatacgaACCTTGTC--AAGAGATGATG----ATAATTCTTTTTACAAAAAGTCAAGATAGGA-AAGGAT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   207682 950 -   591668 I

a score=-181.000000
s ce10.chrX              4972674 184 + 17718866 TTTAGAAATGATGGAAAACGA--ATA---AAGCT---AGAAAAATACAAA--AATA----CAACACACAATATTGGTTAGT-TTAAGATAT---------------AACCGAGTTCGAATCGATGGAAGATCAACTACTTGTCAAGA------GAAGAGCAACTTG------------------------------------------------------ACTCGAGGAAG----------------------------GGGAAAAATGT-TT---------------AGCGGGGAAAGAAATGATAGACGTGGAAAA
s cb4.chrX              10310273 217 + 21540570 ---aataata----------a--ata---aagCTC-------AGCAGTTA--CTTG----ATATACGCAATGACAATGT---GTGACA-AT---------------AACCGAGTTCAAA--AATAGCAGATCAACTACTTGTAGTGAAATTGAGGGAAGG----------------------------GAAAGAGGAatcaaattttaggaattcttTTTGATTGAGGGATTT------------TTTGTCA-------GAAAGAAATGT-TAGAGAAAGAAGTttgcaaaaagaaacaaaatgataGATGTGAGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1836393 241 -  4500979 ---AGGGATA-------GAGA--GTA---AAGCTCACAGAAAAGCGGTTATGTTTG----AACCAAACAAAAGTTGTCTCACATGACA-AT---------------AACCGAGTTCGAATCGATAGAAGATCAACTACTTGTAGTGAATT---GGGAAGGA--TTGGAATTTTTGTCGGACAgcaaatgaaagagaaatgaCAATTTGAGAA--------AGTCGGGGAAAGT--------------------------AGAAAATATGT-TTGAAATAATAGTacg-agcaaaaaaagaaatgataaaTGTGGAAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    165616 246 -   201088 ---agaaataattaaatGAAA--GTA---AAGCTTCGAGAAAAACGATTA--CTTA----TATGGGACTCAATTAGTTACA-GTCACA-AT---------------AACCGAGTTCGAATCGATGAAAGATCAACTACTTGTAGAGA------GAAAGGGAGCCTGGAATTGTTTT------------------------------GGGGAAtaga----aattggaagaaaagcaaataatatgattttcaaaacacaaaagaaGATGTTTTGGGGAGAAGGTGCt-agaaaggaaagaaatgatAGATGTGGAAAA
i caeSp111.Scaffold409  C 0 I 36
s caePb3.Scfld02_0       3221468 255 +  4147112 ---AGGATAGGTTTAGTAAGGGTGTA---AAGCTTAAGGATAAGCGGCTA--TTCAAACCAATCAAACAAAACTTGTCACA-GTGACA-AT---------------AACCGAGTTCAAATCGATAAAAGATCAGCTACTTGTAGAGg------gcgaaaaa---tggaattattttc-----------aaacagtGCAtgaaagaagggaaaaagacG--ATTTGAGAGAGTcggaaagaaaatgttt-----------aaagagaatgtgttggaaaagaag-----gaaaagaaaagaaatgatagatgtgaaaaa
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17934   208632 194 -   591668 -----------TTCAAAAAGG--ACAGGgaacattaaaaattgaaaaata--ctac----caataaagaaaatt--------gtgata-atggaaagaaagtaaaaaaCTGAGTCCGAATCGATAGGTAATAAACTACTCGTTCaaa------gggaaaa------------------------------------------------------------aatgaaggggatttgaacc--------------------aggaaaaatg--ataaaaagttagtctgaaagaaaagaaaaaaatctaaat--------
i caeJap4.Scaffold17934 I 950 C 0

a score=-2742.000000
s ce10.chrX              4972858 23 + 17718866 AAAATGTTTAAAATTGAAATCGT
s cb4.chrX              10310490 23 + 21540570 GATGTGTATACATTGTAGATGGT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1836634 19 -  4500979 AGTGTATATATA----AAAGGGC
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       3221742 23 +  4147112 ATAGTGTCCGAGTTAGGGATTAC
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   208826 21 -   591668 -aaatgaatagacgtgaaatCC-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    165862 36 -   201088 I

a score=138707.000000
s ce10.chrX              4972881 221 + 17718866 GA-------ATCACCACCAACGGAAGAACGGGGCTTTCGTTTGCACTTTTTGCTCATATGTTTCCTGCCACGATTTGGAGC------------------------CACCAGTCGATG---------ATGCTGCTCCGGCGTCC---GAAGTTGATGGGC---CAGCAGTAGCTGCAGCGGCAGCCGACGTGGAAGGACCGGGCTGCTCAACATCAACGTTGCCAGATGTGTTTACCACG----------GTTGAAGCGTCCGCTGCAAAATTGATTG
s cb4.chrX              10310518 224 + 21540570 GA-------TTTACCACCAACGGAAGAATGGGGTCTTCGTCTGCACTTTTTGCTCATAGGTCTCCTGCCACGACTTGGAGC------------------------CAACACTCGATG------------CGCCGCCTGCCTCAGACGAAGTCGATGGCCCAGTACCACTAGCAGCTGCAGCAGTCGACGTGGAAGGTCCAGGCTGCTCAGTTTCCACATGGCCAGATGTGCTGTGCACA----------CCAGAGACGTCCGCTGTAAACGTGAGAA
i cb4.chrX              I 5 I 15
s caeRem4.Crem_Contig0   1836658 210 -  4500979 GAAATACCGATCACCACCAACGGAAGAACGGGAGCTTAGTCTGCACTTTCTGCTCATATGTCTCTTGCCAAGATTTGGAGC------------------------CAATGCTCGATG---------------CTCCCGCCTCGGAAGAAGTCGACGGGC------------------CGGCAGTTGAAGTGGAAGGGCCGGGCTGTTCAGGCTCCACATTGCCAGATGCGCTGTGCACA----------GCAGAAGCGTCCGCTGCAAAATTGATGG
i caeRem4.Crem_Contig0  I 5 I 78
s caeSp111.Scaffold409    165898 215 -   201088 GA-------ATCACCACCAACGGAAAAACGGCAGCTTCGTCTGCACTTTCTGCTCGTAAGTCTCTTGCCATGATTTTGATC------------------------CATTGGTTGATG---------------CTCCGGCCTCA---GAAGTCGACGGGC---CAGCAGAGACAGCAGCAGCAGTCGACGTGGAAGGACCGGGCTGTTCAGCCTCAACATTGCCAGATGCGCTGTGCACA----------GCCGATGTGTCCGCTGCAAAATTGATTG
i caeSp111.Scaffold409  I 36 I 7
s caePb3.Scfld02_0       3221765 227 +  4147112 GG-------ATCACCACCAACGGAAGAATGGAGCCTTCGTCTGCACTTTCTGCTCATAAGTCTCCTGCCACGACTTGGAACCGCTGGTAGACACATTGGTAGACGCGCTGGTCGATG---------------CTCCGGCCTCA---GAAGTTGATGGAC---------------CGGCGGCTGTCGACGTGGAAGGGCCGGGCTGCTCAATCTCAGTATTGCCAGATGTGCTGTGTACA----------GCCGAGGCGTCCGCTGCAAAATTGATCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   208847 217 -   591668 AA-------TCTACCACCAACGGAAAAACGGAGCTTTAGTTTGCACCTTCTGCTCATAAGTCTCTTGCCACGACTTGGTGC------------------------CAGTGGTACAAGTGCTCTCCTCTGTTCCACCAACCCCA---GATGCGCTCGGAT------------------------TCAAAGTTGATGGGCCCGGTTGATCATCGTCAATACTTCCAGATGTGCCG-GTACGAGGAGCAGTTGTCGAAACGTCGGCTGCAAAGTACAAG-
i caeJap4.Scaffold17934 C 0 C 0

a score=-5257.000000
s ce10.chrX              4973102 31 + 17718866 --GCCTATTCATTGTGAATAAAGTTTCTCCAAA
s cb4.chrX              10310757  9 + 21540570 --TTTTACACA----------------------
i cb4.chrX              I 15 I 5
s caeSp111.Scaffold409    166120 31 -   201088 --TTTTACAcaacatcatttttttcgcaCTACA
i caeSp111.Scaffold409  I 7 I 2
s caePb3.Scfld02_0       3221992 31 +  4147112 --TTTTACACAACATTAATCTCGATACTCTATA
i caePb3.Scfld02_0      C 0 I 63
s caeJap4.Scaffold17934   209064 31 -   591668 GTCATTGCATTGCACTGCACATCTGGCAGCA--
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1836868 78 -  4500979 I

a score=-3906.000000
s ce10.chrX              4973133 21 + 17718866 AAAAAAAAAACAAACAGCACA------
s cb4.chrX              10310771 12 + 21540570 GTAGGGAA---------GAAA------
i cb4.chrX              I 5 I 1
s caeSp111.Scaffold409    166153 21 -   201088 ATATAGCACTCCATCTGGACA------
i caeSp111.Scaffold409  I 2 I 5
s caeJap4.Scaffold17934   209095 26 -   591668 -AAGGGAAAAGGTGACAAACAGCTGCA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3222023 63 +  4147112 I
e caeRem4.Crem_Contig0   1836868 78 -  4500979 I

a score=-5942.000000
s ce10.chrX              4973154 46 + 17718866 AATATTTTTCCGCtaataaaatatatattaattaaaCGACACCCAT
s cb4.chrX              10310784 35 + 21540570 AGTGTTCTTTCTGaagtaa-------atgaaaaaaaaaactt----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1836946 31 -  4500979 CATCTTattccaaaatta-----------aaaaaaataactt----
i caeRem4.Crem_Contig0  I 78 C 0
s caeSp111.Scaffold409    166179 31 -   201088 CATTTTGTCACCCCAAAA-----------AACACAACAACTC----
i caeSp111.Scaffold409  I 5 C 0
s caeJap4.Scaffold17934   209121  5 -   591668 -------------------------------------AACTT----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3222023 63 +  4147112 I

a score=194588.000000
s ce10.chrX              4973200 268 + 17718866 ACAATCATAATTCGGCGCCTCTTCGTAATCAGCGTTACGTGATCGTCTTGACTTCTTCTTCTTTTGCTTGACTTCAACCATCAATTGAGGTGGCATCTAGAAATTT---------------------------------GAAATTTGATATTTTGAAAAAA---------------------------------------AAAATCAGAATGTGT------------------------------ACCTGAATGAGCTGGTAAGGGCTCTTTTTCTTCATCAATGCTTCTCGCAAATTGAAAATTTGTCCACGCATCACAGACATTTGCTTTTCGAAGATCTTTTTGTCAAAACCTTTGTCATTCTGAAA
s cb4.chrX              10310819 219 + 21540570 acaatcaTAGTTGGGGGCCTCTTCGTACTCAGCGTTGCGGGATCTTCtggatttcttcttcttttgtttgaCTTCAACCATCAGTTGCGGTGGC-------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGGATAAGTTGGTATgggctcttcttcttcatcagaGCTTCGCGCAAGTTGAAGATTTGTCCACGCATCACCGACATTTGCTTCTCAAAGATTTTCTTGTCGAATCCTTTGtcgttctggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1836977 219 -  4500979 acAATCATAGTTGGGTGCCTCCTCGTACTCGGCGTTGCGAGAACGTctcgacttcttcttcttttgtttcacTTCGACCATGAGCTGTGGAGGC-------------------------------------------------------------------------------------------------------------------------------------------------------ATCTGAATGAGTTGATAGGggcttttcttcttcatcagagCCTCTCGCAAGTTGAAGATTTGTCCACGCATCACCGACATTTGCTTCTCGAAGATTTTCTTGTCGAATCCTTTGTCGTTCTGGAA
i caeRem4.Crem_Contig0  C 0 I 85
s caeSp111.Scaffold409    166210 269 -   201088 ACAGTCATAGTTGGGAGCCTCTTCGTATTCAGCATTGCGGGATCTTctcgacttcttcttcttttgtttcaccTCGACCATCAATTGTGGAGGCATCTGGAAAATA---------------------------CATTGATAGATTT-----------AAGGACTGGA---------------------------------AAACTCAAG---------------------------TTAATT---ACCTGGATGAGTTGGTAAggactctttttcttcatgagAGCTTCACGCAAATTGAAGATCTGTCCACGCATAACTGACATttgtttctcgaaaatcttTTTGTCGAATCCTTTGTCGTTCTGGAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3222086 370 +  4147112 acaaTCGTAGTTGGGTGCCTCCTCGTATTCAGCGTTGCGGGATCTtctcgacttcttcttcttttgcttgACCTCAACCATCAATTGTGgtggcatctgaaaaatgatcgTTTGAGAACAAATGAAGGATTGCTgctgacagttttttttttcagacaaaaaatggaagaaacgACCTTGTTCAATAAacgttgtttttgaaattcagggTTCGAGCCGACACTGCTTACTGGGCCCTAATTCTCACCTGAATCAACTGGTAGggactcttctttttcatcagaGCCTCGcgcaaattgaaaatttgtccACGCATCACTGACATTTGTTTCTCGAAGATTTTCTTGTCAAATCCCTTgtcgttctgaaa
i caePb3.Scfld02_0      I 63 C 0
s caeJap4.Scaffold17934   209126 287 -   591668 ACAATCATAGTTAGCTGCCTCCTCGTATTCAGAGTTGCGAGATCTTCTCGAccttttcttcttctgcttCACCTCAACCATCAATTGTGGTGGCATCTGGAAGGca------------acatttaaaatttaataacAACTATTTTTTGCACCCAAAAAAGAATAC----------------------------------AAATACAA-------------------------------------ACCTGAATAAGCTGATAAGGACTCTTTTTCTTCATGAGAGCCTCACGAAGGTTGAATATTTGCCCGCGCATCACCGACAtttgtttctcaaaaatcttCTTGTCGAAACCCTTGTCGTTCTaaac
i caeJap4.Scaffold17934 C 0 C 0

a score=910.000000
s ce10.chrX              4973468 1 + 17718866 A
s cb4.chrX              10311038 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    166479 1 -   201088 A
i caeSp111.Scaffold409  C 0 I 46
s caePb3.Scfld02_0       3222456 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   209413 1 -   591668 a
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=-1107.000000
s ce10.chrX              4973469 1 + 17718866 -T
s cb4.chrX              10311039 1 + 21540570 -t
i cb4.chrX              C 0 I 22
s caePb3.Scfld02_0       3222457 1 +  4147112 -t
i caePb3.Scfld02_0      C 0 I 245
s caeJap4.Scaffold17934   209414 1 -   591668 a-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    166480 46 -   201088 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=1146.000000
s ce10.chrX              4973470 15 + 17718866 AAAAATCAATATATT
s cb4.chrX              10311062 15 + 21540570 aaaacttaGGAAATT
i cb4.chrX              I 22 C 0
s caeJap4.Scaffold17934   209415 15 -   591668 aaatacaaataaact
i caeJap4.Scaffold17934 C 0 I 18
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeSp111.Scaffold409    166480 46 -   201088 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=108.000000
s ce10.chrX              4973485 120 + 17718866 AAAAATGTAATGAGAAGTTTTTAGATTATTAAAGACGGACGTTGAGATTTTATTTTTTCTGATACCAAATTTTAA---------CAAAATGAT--AATTTGGACCAAAAAATGTATAATGCGGTCAACTAA
s cb4.chrX              10311077 114 + 21540570 GAGCACACa-tgagaa-tttttagaa-atttgagcGGTATttcgaa------------ctgcaaaaaaattttcagctcaatttcgaaatattccaattt--cccaaaaaatgactTATGTGTAAAACTGA
i cb4.chrX              C 0 I 34
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430  18 -   591668 I
e caeSp111.Scaffold409    166480  46 -   201088 I
e caeRem4.Crem_Contig0   1837196  85 -  4500979 I

a score=0.000000
s ce10.chrX              4973605 38 + 17718866 TACATATCAAACATATCATTTACAATATAAAAACTGAA
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430 18 -   591668 I
e cb4.chrX              10311191 34 + 21540570 I
e caeSp111.Scaffold409    166480 46 -   201088 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=1016.000000
s ce10.chrX              4973643 41 + 17718866 TTTTCTAATAACATTGATGAATACCTTTTA-AAAATTAGTTT
s cb4.chrX              10311225 42 + 21540570 TTTCCGAGGCTCAAAGTTTAATACCTATTATaaaagtagttt
i cb4.chrX              I 34 I 92
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430 18 -   591668 I
e caeSp111.Scaffold409    166480 46 -   201088 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=0.000000
s ce10.chrX              4973684 97 + 17718866 AGCGgtctgaagttgacatttttgcattattgtcatttattgcatattttggtagtttatctcccgttattttgttgaagaaggtacatttaaagcc
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430 18 -   591668 I
e cb4.chrX              10311267 92 + 21540570 I
e caeSp111.Scaffold409    166480 46 -   201088 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=-2133.000000
s ce10.chrX              4973781 356 + 17718866 aataggaaactaatttcgatgatttttggttacctattggctttaaatgtcccttaatcaacgaaattaaatgagataaactgccaaaatatgcagtaaagaatgataacttaaaaagttaatttcgggcaaatgcgacacaaaaaaagtatttttgaaagttttttgaaaagttttattccgaaatctgttcatttgagcccatcgtagtcttatacgttcaaaatcgtctaaaccgttggtcctccttcaaGAAACATTTT--TAGGCAGCA--GGAATACTCTAGAAAATCAAGAGTAAATTGCAGTTCAAGTTCAGGTATGAG----TTTCAAAGCTTAACTTT--------CAAATTTTTTTCGTAA
s cb4.chrX              10311359 279 + 21540570 AATATGTATCT--TTTCTATGATTGTGAATGAA-----GATTTACGATGTTT-TTGACCAAC---------------------CGACCACAtacggtaaaacctg-tagcaggaaatttcaattttgaaccaat-----------------tttcta------tgttgaaaaataagaaagtgTTAACTGATTATTAA--------------TCATACTATAAAAAGTGT--------TTTGTCGTTT-----GAGACATTTTGATATGTTGCATAGGAATGA---AGATAGTTGAGCACAAACTTTAG----------AGTGTGGGCCCCTTCTATTACTGAATTTTACGGTAATCAATTTTTAGGCAAAG
i cb4.chrX              I 92 C 0
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430  18 -   591668 I
e caeSp111.Scaffold409    166480  46 -   201088 I
e caeRem4.Crem_Contig0   1837196  85 -  4500979 I

a score=-1450.000000
s ce10.chrX              4974137 39 + 17718866 ------TTTGTATTTCTTACTTTTAATTAATTGTTTCGAACCCAA
s cb4.chrX              10311638 23 + 21540570 TCTAAagctataaatttttattt----------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    166526 39 -   201088 ------TTTATAGATTTTGTTCTAATAGCATCGTCCCAGTCTAAA
i caeSp111.Scaffold409  I 46 C 0
e caePb3.Scfld02_0       3222458 245 +  4147112 I
e caeJap4.Scaffold17934   209430 18 -   591668 I
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=273.000000
s ce10.chrX              4974176 1 + 17718866 A
s caeSp111.Scaffold409    166565 1 -   201088 A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3222703 1 +  4147112 A
i caePb3.Scfld02_0      I 245 C 0
e caeJap4.Scaffold17934   209430 18 -   591668 I
e cb4.chrX              10311661 0 + 21540570 C
e caeRem4.Crem_Contig0   1837196 85 -  4500979 I

a score=1142.000000
s ce10.chrX              4974177 4 + 17718866 ACTA
s cb4.chrX              10311661 3 + 21540570 -ctc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1837281 4 -  4500979 ACAA
i caeRem4.Crem_Contig0  I 85 C 0
s caeSp111.Scaffold409    166566 4 -   201088 ACAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3222704 4 +  4147112 ACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209430 18 -   591668 I

a score=151958.000000
s ce10.chrX              4974181 141 + 17718866 ACCTTGAAAACACGTCGAAGATCCCCGCATAGCTCGCGCACCCAATTAGTATCATCCAGCTTTGGCAGAAGCAGGTCAACAATATCATCGGAAAAGGGAATCTGAGCCTGTGGGAGAAGTGCCCAACCAAATGGATCTGGA
s cb4.chrX              10311664 141 + 21540570 acCTTGAAGACACGTCGAAGATCCTCACAAAGCTCCCTGACCCATTTCGTATCATCCAATTTTGGCAGAAGCAAGTCGACAATCTCATCAGAAAATGGAATACGAGCCTGTGGGAGAAGTGCCCATCCAAATGGATCTGGa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1837285 141 -  4500979 ACCTTGAAAACACGTCGGAGATCCTCGCAGAGCTCACGGACCCATTTAGTATCGTCCAGCTTTGGCAGAAGCAAGTCGACGATGTCATCCGAGAATGGAATACGAGCCTGTGGGAGAAGCGCCCATCCGAATGGATCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    166570 141 -   201088 ACCTTGAAAACGCGTCGAAGATCCTCGCAAAGCTCACGGACCCATTTCGTGTCGTCCAATTTCGGCAGAAGCAGATCGATGATGTCATCGGAGAATGGAATACGAGCCTGTGGGAGAAGAGCCCAGCCAAAtggatctgaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3222708 141 +  4147112 ACCTTGAAGACACGTCGAAGATCCTCGCAGAGCTCGCGAACCCATTTAGTGTCGTCCAATTTTGGGAGAAGCAAGTCGACAATCTCATCGGAGAATGGAATACGAGCCTGTGGGAGAAGTGCCCAGCCGAATGGATCTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   209448 141 -   591668 acCTTAAACACACGACGCAAGTCTTCGCAAAGTTCACGGACCCATTTCGTGTCATCCAGCTTTGGCAGCAACAAGTCAACAATTTCATCGGAAAACGGAATCCGGGCCTGTGGAAGAAGAGCCCAGCCGAAGGGGTCTAAA
i caeJap4.Scaffold17934 I 18 I 3019

a score=-96041.000000
s ce10.chrX              4974322 1007 + 17718866  
s cb4.chrX              10311805  957 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1837426  980 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 90
s caeSp111.Scaffold409    166711  792 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3222849  942 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209589 3019 -   591668 I

a score=-30485.000000
s ce10.chrX              4975329 135 + 17718866 GTTCACTGACCTGTTAAGAAATTAAACGattaaaaaattaaataatttttaCAAT------TCGTTCTGTATTAGTAATAATTATTTCAATATAAGTTAACGCTTTTAAAATTTCACAAAATTTCACAAAAGCCTAGATAA----------------------------------------------------------------------------
s cb4.chrX              10312762 182 + 21540570 -------GGTACATCGAGTTTTTCATGtatagaaaaatcgaata----tgTAAAAACTAAGTGGTTTTCTTTCATTCTCCAATGTGTAAGAATAAACCAAAGTACCCTTGGACCCCATATACCTAAGAA----CTAAACCAT----------TTCTTGATATACCCTTGGAATCTGGACCCGAAACAAATCATAATCAA----------CTGTTGAT
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold409    167503  66 -   201088 ----ACTGATatg------------------------------------gaaaaa------tagtttg-----------------------------aaaattgttcata---ttcaaaattttca-aa----tcaaattgC-------------------------------------------------------------------TCTATGA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3223791 176 +  4147112 ----CTAGTTATGATACTTGTCTTGAGAACATCAATGCCCAATA----AGAACAA------TGGTTTTCCACTGGT----GAGAtctcag----aacaaaaatattttta---tccgAATTCTTGGTGT----TTCAATTGCCGAAGTAAGGAATTTG--ATACCTTAAGTATCCg---------caaatatttttcggaatttttatttttctga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209589 3019 -   591668 I
e caeRem4.Crem_Contig0   1838406  90 -  4500979 I

a score=-7701.000000
s ce10.chrX              4975464 48 + 17718866 ------TTTTCAAAAAC---------------------CTAGTTAAACTTTTTTTTAGAATTTCTAGATTTGTTC----
s cb4.chrX              10312955 51 + 21540570 ------ATTTTAACCACAATTA---GG------AGTTGCCactca----tattttcagat------gttatGATTG---
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1838496 44 -  4500979 ------tttttaaatac---------------------cgaatga----ttttttttgac----aagttcTCTTTGTCC
i caeRem4.Crem_Contig0  I 90 I 14
s caeSp111.Scaffold409    167569 55 -   201088 TCTCTCAT---AATCACAAG-----GACtttttggttgccactta----ttttttcaa--------gttttgatt----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3223967 63 +  4147112 tcttctaTTCCTACTACAAGTACATGACTGGTTAGTTGCCACTCA----TATTTTCAG--------GTTCTGATT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209589 3019 -   591668 I

a score=-5147.000000
s ce10.chrX              4975512 26 + 17718866 -------ACGTCTAATTCAAACTTTA--------ACCTACT-----
s cb4.chrX              10313006 37 + 21540570 -ACATTTACAGACCCCACAGGTGACC--------GTCTCCCCTCCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    167624 26 -   201088 gattttttctgacacttca---------------gtgttcc-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3224030 39 +  4147112 GA--CTTTCTGACATTTCAAGTCGTACGCCGCAGGTGTTCC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209589 3019 -   591668 I
e caeRem4.Crem_Contig0   1838540 14 -  4500979 I

a score=24.000000
s ce10.chrX              4975538 1 + 17718866 -C
s cb4.chrX              10313043 1 + 21540570 -C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1838554 2 -  4500979 ca
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold409    167650 1 -   201088 -c
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3224069 1 +  4147112 -C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   209589 3019 -   591668 I

a score=17551.000000
s ce10.chrX              4975539 514 + 17718866  
s cb4.chrX              10313044 602 + 21540570  
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig0   1838556 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 91
s caeSp111.Scaffold409    167651 437 -   201088  
i caeSp111.Scaffold409  C 0 I 30
s caePb3.Scfld02_0       3224070 606 +  4147112  
i caePb3.Scfld02_0      C 0 I 60
s caeJap4.Scaffold17934   212608 376 -   591668  
i caeJap4.Scaffold17934 I 3019 C 0

a score=-22964.000000
s ce10.chrX              4976053 75 + 17718866 GTGGACAGCAAAAATTAAAAATC---AA--ATTTT----TCCCTGA------CGCTGAAAAGTAC--------CAC-TTCCGTTGTTCC---TTCTCCACTT--------
s cb4.chrX              10313749 83 + 21540570 gaaatcgaaaaatcgcaacAGTCTCGAA--AGTTTAGAATTATTAT-GTATTTATTAAAAC------------ATCGTTCC----TCTCAATTTTGATATCC--------
i cb4.chrX              I 103 I 12
s caeSp111.Scaffold409    168118 44 -   201088 ------------------------------tttttgaaactactgG--------CCGAAAC------------AAA-TTCC----TTGC---CTTGGCAGTT--------
i caeSp111.Scaffold409  I 30 I 1
s caePb3.Scfld02_0       3224736 87 +  4147112 GAGAACAGGTCGACTTTAGAgtc---aacttttctgaaaacattggtaaaataattgaaaattattctg----aac-TTCC----TATC---TTGGGTGGTT--------
i caePb3.Scfld02_0      I 60 I 24
s caeJap4.Scaffold17934   212984 57 -   591668 ------------------------------------GAATTATCAT---------TAATATGTACCCAGTGCCCAA-CTAG----TTTT---CTTGATAGTTTGCCATTG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1839043 91 -  4500979 I

a score=315036.000000
s ce10.chrX              4976128 899 + 17718866  
s cb4.chrX              10313844 903 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1839134 894 -  4500979  
i caeRem4.Crem_Contig0  I 91 C 0
s caeSp111.Scaffold409    168163 898 -   201088  
i caeSp111.Scaffold409  I 1 C 0
s caePb3.Scfld02_0       3224847 914 +  4147112  
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17934   213041 927 -   591668  
i caeJap4.Scaffold17934 C 0 I 253

a score=-2756.000000
s ce10.chrX              4977027  9 + 17718866 GGGTTCAAA------------------------
s cb4.chrX              10314747 32 + 21540570 -TGagcaaaatgttttgattgaTATAGTTCATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840028  8 -  4500979 -TGAGTAAA------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169061  9 -   201088 GAGCacaaa------------------------
i caeSp111.Scaffold409  C 0 I 118
s caePb3.Scfld02_0       3225761  8 +  4147112 -aatataaa------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I

a score=-6499.000000
s ce10.chrX              4977036 30 + 17718866 ATGGAATTACAT----------------------ATTACAATTTGCAATATT
s cb4.chrX              10314779 49 + 21540570 ---GGATTTCGTTTGTGTCTAGTGTAACTTAAAACTCATAGTGTGCCAAGTT
i cb4.chrX              C 0 I 111
s caeRem4.Crem_Contig0   1840036  4 -  4500979 ----------------------TGGA--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3225769 18 +  4147112 ----------------------------------attagaATGTGCAAAAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I
e caeSp111.Scaffold409    169070 118 -   201088 I

a score=-3111.000000
s ce10.chrX              4977066 75 + 17718866 TTTTAAAGAGTTTTTTTCCGTGTGTACTATTTGAAGAG-GAGAAATaaaccacttctgtggtgccaaaaata--caaa
s caeRem4.Crem_Contig0   1840040 43 -  4500979 -TCCAAAGAGTTT-----------------------AGTTGTAGTGAAACCATTTTT----------GAATGACCAA-
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3225787 31 +  4147112 ATTCGAATAGTTA-----------------------AG-GGTAACTAA-------------------GAAtg--ca--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I
e cb4.chrX              10314828 111 + 21540570 I
e caeSp111.Scaffold409    169070 118 -   201088 I

a score=-27201.000000
s ce10.chrX              4977141 156 + 17718866 atatcatagtaa--aatgtttaaaattttatcgttaaaaaaattattcaca-----------------atcaaaaagtgacaattaattag------------tttttgACACTT---TTCTCATAGGGAAAACAATCT-----------------------------------------------------------------------------------------GAAATAGTTTTAAAATT---AAACTTGAA----------GTTCTATGAAAATAAACGGAACCGT
s cb4.chrX              10314939 272 + 21540570 ATATCACGATAAGTGATTTATCATCg------------accattttttatatctataTCTTTTAAAGAAGATGAGAGTGGGCTTtcattagagcatttacggtatttgaGTTCTACAGTTTTTATAAGTGTTTGGAAACATTCATTCGGATTATTTGTTTATTCAAAAGTAATGTGTTTGGaatttgggaaattcaaaactaatcgaattggaaaatttttgatcgttgaaataattttaaaaaagacaTATCCGAAAGCtttcaaaatcctga--aattgaTCAG------
i cb4.chrX              I 111 C 0
s caeRem4.Crem_Contig0   1840085  84 -  4500979 ATATCa--------ggtttttc----------------aatatttctcatA----------------------------------------------------ATCTAGTTTCTA---TTTTCATGA-----------------------------------------------------------------------------------------------------TGAATGGTTATAAAACA---ATATCT-------------ATTCTAA-----TGACCA-------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3225818  80 +  4147112 --ttca--------aattttgaagat------------aagATTTCTTCGA----------------------------------------------------AACTAACAACTT---TTAATACAAGGGCA------------------------------------------------------------------------------------------------TGAGTGTTTCGAA-------GTACG--------------ATACTGT------------------
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold17934   213968 253 -   591668 I
e caeSp111.Scaffold409    169070 118 -   201088 I

a score=-9075.000000
s ce10.chrX              4977297 219 + 17718866 AAAACGCTCATGA------------------ATTCACCCGTAAAATTC---AGGACTTCAAGTTCT---AGATTTTATAAAGAATTAAGCTTAACA--------------------CTTCAAATT---CATGACTTT--------------------------------------------CAACCTATTACTTTAGT--------------------------------GTGTATTGCA--------CTTCTGAGATATCACAAATGC----------TATCAATAACATTAGTTCTACTAATTCGAATACATAACATTGCAACTTTCGAATCA-ACATCACCCAACACAATTGCTTGTG
s cb4.chrX              10315211 346 + 21540570 -ATACACTTGGGAATATACGGTATCTACAGtatctaattttcaacttt---ctgaagaaaatttctTGTAAAATACCTTCATAactaaaatttccgaaatataTTTCATTACAATATTTCTAGCTGGCTGTTGTTCTTTCCAAAATCAACTATGTGCAGTCTGTTCAAACATAAGAGTAACTagtctccaattttttttatcctttcggaaaatctgatttcAATCGTTTCTAGATTCAAACTTCAATCCTCTCTAATCCATCTAGTTAACATACGCTACAACGATAACATTAGCTTTGTGATTTAAA----ATAACATTGCAACAATCAAATCAGACGATACTCTAA-----TGTC--CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840169 203 -  4500979 -----ACTTATG-------------------ATTCGAATTTCTACTTTGAactgatcaaatttttt------gtatctaCAGAACTA-----TCCG--------------------TTTTAAATTGTGTGTTGCTTC-----------------------------------------------TCTCTaactttggtttt-------gaaa------------------ctAAACTTAA--------TCTATTTAATCTAACCAGTTA--------CAAAACGATAACATTAGCCTTGTG--TTCCG----TTAACATTGCAACTTTTGAATCA-ACAAC-CCGTAC-----TGCC--CG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3225898 115 +  4147112 I
e caeJap4.Scaffold17934   213968 253 -   591668 I
e caeSp111.Scaffold409    169070 118 -   201088 I

a score=15441.000000
s ce10.chrX              4977516 58 + 17718866 TCACTAATCGTCTTTAAAACATTAGAACATCACTTTCTATTTCTATTTCATCCATCTC
s cb4.chrX              10315557 50 + 21540570 TCACTAATCGCTT--------TCAGAACGTCACTTTCGATTTCAATCTCTTCTTTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840372 50 -  4500979 TCACTAATCGTTT--------TCAGAACGtcactttctattttcttctcatctaTCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169188 50 -   201088 tcactAATCGGGT--------TCGAAACGTCACTTCTAATTTCCATCTAATTCGTCTT
i caeSp111.Scaffold409  I 118 C 0
e caePb3.Scfld02_0       3225898 115 +  4147112 I
e caeJap4.Scaffold17934   213968 253 -   591668 I

a score=13546.000000
s ce10.chrX              4977574 63 + 17718866 AGA------------AGAACCCCTCTATATATAACA--------CTGTAAAC-ATCACGGTATCATCAAAAGAA-------GTAAGTAGCC
s cb4.chrX              10315607 50 + 21540570 ---------------AGAA-------------------------ATGTAAACAATCACGGTATCATCAAAAAGAAACTGCTATAAGTAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840422 71 -  4500979 ---------------AGAACCTC----TATAAAATATCAGAAACCTGTAAAC-ATCACGGTATCATCAAAAGAAAACTGCTGTAAGTAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169238 62 -   201088 ------------CTCAGAACCT-------TAGAATA--------CTGTAAAC-AGCACGGTatcatcaaaagaa-attgcTGTAAATAACC
i caeSp111.Scaffold409  C 0 I 16
s caePb3.Scfld02_0       3226013 69 +  4147112 AGAAGGGCTGAGTTTGCAGCCCA----TATATAATA--------CAGTAAAC-AACACGGTATCATCAAAAAGA---------AAGCAGCT
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I

a score=-5071.000000
s ce10.chrX              4977637 10 + 17718866 -------------------TGAA--------GTTCCA
s cb4.chrX              10315657  7 + 21540570 ----------------CGCTCAA--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840493  9 -  4500979 --------------GGcgttgaa--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3226082 31 +  4147112 AAGAGTAACCGCTTGCCgccaaaaaagtttc------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I
e caeSp111.Scaffold409    169300 16 -   201088 I

a score=6477.000000
s ce10.chrX              4977647 79 + 17718866 -----TTTTTCCCCTCTATTC--TAGCAATTAGTACACCCTATCTTACACCTTGA-----TCAGT-TGGTCGAGGACTGTTTTCATAAGGTG
s cb4.chrX              10315664 76 + 21540570 GTTTGCCATTTACTT----CCAAAAccaattagaaaaat-tatctTACACCCCCGATCTTTCCAC---CTAGAAAAACAACTAC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840502 73 -  4500979 ttttcttttttattt----cc--aacCAATTAGTACAGCATATCTTACACTCCCA-----TCTAT---CTAGAAATACTGTTTCCCA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169316 58 -   201088 -------tttttctt----tc--aagcAATTAGTACTTCATATCTTACACTTTGA-----TCTAG----------Aacactttctc------
i caeSp111.Scaffold409  I 16 C 0
s caePb3.Scfld02_0       3226113 75 +  4147112 -----tttttttcttctccta--aAGCAATTAGTACATCATATCTTACACTCCGA-----TCTAGGAACTAGAAAAACAGTCCCTCA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   213968 253 -   591668 I

a score=398655.000000
s ce10.chrX              4977726 562 + 17718866  
s cb4.chrX              10315740 603 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1840575 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169374 579 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3226188 581 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   214221 550 -   591668  
i caeJap4.Scaffold17934 I 253 n 253

a score=1000.000000
s ce10.chrX              4978288 1 + 17718866 C
s cb4.chrX              10316343 1 + 21540570 C
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1841159 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169953 1 -   201088 C
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3226769 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   214771 253 -   591668 I

a score=-4856.000000
s ce10.chrX              4978289 23 + 17718866 ------------AGAGA--GAAAATGGGCATTTGGGC
s caeRem4.Crem_Contig0   1841160 28 -  4500979 A-------TGTTCGAAA--CGAAGCCAGTATCCCAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169954 10 -   201088 A-------TTTTGGAGA--------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3226770 30 +  4147112 ATGAGCTCTGTTCGAAATGGGAAGCTAGTC-------
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17934   214771 253 -   591668 I
e cb4.chrX              10316344 35 + 21540570 I

a score=-1735.000000
s ce10.chrX              4978312 20 + 17718866 AGGGGAGAGGAAGAAGTGCT-------
s caeRem4.Crem_Contig0   1841188 14 -  4500979 -------GTGAAAGTGTACGA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169964 22 -   201088 -----AGAGGAGAGTGAGCCCAGTATC
i caeSp111.Scaffold409  C 0 I 11
e caePb3.Scfld02_0       3226800 13 +  4147112 I
e caeJap4.Scaffold17934   214771 253 -   591668 I
e cb4.chrX              10316344 35 + 21540570 I

a score=1437.000000
s ce10.chrX              4978332 9 + 17718866 TTGCATTTT
s caeRem4.Crem_Contig0   1841202 8 -  4500979 CTGCTTTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    169997 9 -   201088 CCCCATTTT
i caeSp111.Scaffold409  I 11 C 0
s caePb3.Scfld02_0       3226813 9 +  4147112 CTGCATTTT
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   214771 253 -   591668 I
e cb4.chrX              10316344 35 + 21540570 I

a score=141585.000000
s ce10.chrX              4978341 613 + 17718866  
s cb4.chrX              10316379 662 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1841210 683 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    170006 729 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3226822 679 +  4147112  
i caePb3.Scfld02_0      C 0 I 62
e caeJap4.Scaffold17934   214771 253 -   591668 I

a score=-4813.000000
s ce10.chrX              4978954 57 + 17718866 AGAGAGAGAG--AACGACCAGTTGGGTTGCGCTGTGGAGAAT-TGCGCTTTGTTAGAAGA
s cb4.chrX              10317041 28 + 21540570 --------TC--TCTGACCAGT----CAGTGTGTTGATGATT------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1841893 33 -  4500979 --------TC--AGTGACTAGTCGCGCAGCGGGTTGatgatca-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    170735 41 -   201088 CCAAACATTCAATATAACCAGTCGATCAGTCCG-CGGTGATC------------------
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3227501 62 +  4147112 I
e caeJap4.Scaffold17934   214771 253 -   591668 I

a score=57654.000000
s ce10.chrX              4979011 341 + 17718866 AAAAACCGCAAAAAAATCATCGCTTCATAAATCTTCCT------------TCTTTTCTGTCTTAT--------------------CGTTTGT--TGTTCCATAAGTGTTCGTTT-----AGTTTG-----------GCTTAGACTTA---------TTGATGGAAA----------TA-------TCAAAAGTTGCAACAATTAAAAACC--------------AAAACCTAATTCAATGACTAGTGACTAATGCGACAACAATTTTTCGAAAAA---------------AAGTT-----TAACCGTTCACTGACACCAACCTGACAAACGCGACAAAAAAGTTTGATAAGAG--------CG----ATTGAATTTAAAGCGCAACGCCGTTTGTTTATGTC--GATA--------TGGTTTT---CATATTACAC---------------------AAGTTGTTCGCTTTTTCTTTCTACAATTCCAACAAAAAAT
s cb4.chrX              10317069 408 + 21540570 -------GCAGCAAAATGATCGGTTCATAAATCTTGTCTTAGATTTT---TCGCGTCTATTCTGGCATCTGTGAACCATCGTTATCTTTTGTTGTGTGCCGAAAGTGTTCGGTTAAAT-CGTCTG---------CGGCAAGAACAAA-----------AATGGCAAGTG-------TAA------TGAAAAAATC--ACACACGCAAACATTACAGTTTAA---GGAATTTGATTAAAATGCGCGTGACTAATGTGGCaacaattttccgaaaaagaaaatttcgaaaaaaagttttctcgaACGGTTCAATGACACCAACCTGACAAGC-----------GGTAGATAAGGGCAAAAGAAAG-GGAATCAA-----AACCtc-attttgtttgtttgtttc--gaaacatgacTCTTTTTTC---CCTAGCACCCATACGGAatttacttttaaaaaatttatttatacT-----------------ATTAAACCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1841926 355 -  4500979 ------aaaagaaaaatcatcgGTTCATAAATCTtgtc----agttt---tcttttctgccTTAG-----------AATCGTTATCTTTTGT--TGTTCCTAAAGTGTTCAGTTTAGT-GGTTTGGCATCTAAATGGCAATATCGAA-----------AGTGTAATGTGTCTT---TAACTCT--TGAAAAAACCGAACGAAAGCAAACA----AATTT-----GGAATTAGATTAGAAT-CGCGTGACTAATGCGGcaacaatttttcgaaaaa--------tgaacaaaaact-----aAACCGTTCAGTGACACCAGCCTGACAAGCGCAAAAA----GGTTGATAAGGG---GTGAGAG-AGAATCAAATTCGAACcga-aaattgtttgtttgtttc--gaaa--------ttctttt---c------------------------------AAGTTCTCTATATT------------------------CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    170776 371 -   201088 -AAAAACATAGGGAAATCATCAGTTAATAAATCttgtc----agtttttcttttctctgccTTAG-----------AATCGTTATCTTTTGT--TGTTCTAAAAGTGTTCGGTCAAGCAAGTCTA-----------GCAAGGACGAAGTTGCCAATTTGGTGTAATGTGTACT---AAACccgaatcaaaaaaccaaactaAA-CAAtac----aattcgaa----aatttgattagAAA-CGCGTGACTAATGcattaaatatttttcgaaaaaa-------tgaaattgaact-----aAGGCGTTCAGTGACACCAACCTGACAAGCGCAAGAAAAACGTTTGataagga------aaagaagaatcgcATTTAAAGAG--AGTATGTTTGTTTGTTTC--AACA--------TATTTTC---TCGAGT-------------------------gttcttttcatatt--------------------------
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3227563 357 +  4147112 -aaaaacagagaaaaatcatCGCTTCATAAATCTTgcc----agttt---tcttttctgcctTAG-----------AATCGTTATCTTTTGT--TGTTCCAATAGTGTTCAGC------AGTCTA-----------GCAAGGACAAAGTTGCCATTTTGGTGTAATGTGTCTTCAacaactcagaaaaaaaacctaaatcaAATCAAACC----ATCTTGAATTGGAATTAGTTTCAAAA-CGCGTGACTAATGCGgtaacaatttttcgaaaaa----------------------------gtgttcagtGACACCAGCCTGACAAGCGTATAAAAAA-GGTTGATAAGAG------GAAG-AGAATCAAATTTAAAGCG--ACTTTGTTTGTTTGTGTCCGaaaa--------ttctttctcttctaGT-------------------------TTGTTATCCTTTTT--------------------------
i caePb3.Scfld02_0      I 62 C 0
e caeJap4.Scaffold17934   214771 253 -   591668 I

a score=226002.000000
s ce10.chrX              4979352 423 + 17718866 TGCTCACCTTTTCCGGTAGTCCAATTCGATGAAATCGTCTTCCAATATTTGGATATCTTGATTGAATTCTCTCCTTCGTCCGTGCTTTCGCCCGGTCAATACGGTCATAGTAGAAAGTTGGAGCCGCCAGTTCAACCACCCCGGTTGGTGGTACGATTCCCAGCTTGAGCTTCTCATCCACAAGTGAAGCTCCAACTTCTGACAGGTATCCCTGCAAAAAGTA---ATCAGTTAGTCTTGGCTATCA-AATTGTAAACATTTA-TG-------TATATCATGCAT-TCTATATGC------TTCGGGATT------------------------TGTATGTACTTGACACCCCTCTTCCAAGTCCG---CCTGTATAACCATATAACCAGCCAAATCGACACATCTACGGC--AGGAAAATG---GACGACGACTACACATAATTATTTCAG------------T--AGTACGCTAAGCACTCATGCG
s cb4.chrX              10317477 393 + 21540570 T-CTTACCTTCTCTGGTAATCCGATACGATGGAATCGGCGTCCAATATTCGGGTATCTTGACTGAATCCGTTCCTTGGTTCTAGCCTTGGCGCGGTCGATGCGATCGTAGTAGAATGTTGGCGCCGCCAATTCCACGACCCCAGTAGGTGGGACGATTCCCAGTTTGAGTTTCTCATCCACCAACGACGCTCCGACTTCGGACAAGTatccctgaaaaaaatacacatAGGT---ACTCGGTTATTC-ATTGGTTGTAAAGGA-CA-------CACAT-AAACAC----ACATTA------TTCGGGAAAAACCAC--CCGATGCTGTCAAT----------------------------------------------------------CCAGAAATACGAATTTGCGCG--AAATGAAC----TAGGATG---ACACATAATTATTTCAGTAGTCGTAGTCCT--AGTACGCTAAGCACTCATGCG
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1842281 429 -  4500979 T-TTTACCTTTTCCGGCAATCCGATACGATGGAAACGCCGTCCAATGTTTGGGTATCTCGACTGAATTCTTTCCTTTGTACGAGCCTTAGCTCTATCGATACGGTCATAGTAGAATGTTGGGGCAGCCAATTCGACAACTCCTGTAGGTGGTACGATTCCCAATTTGAGTTTCTCATCAACCAACGAAGCTCCGACCTCCGACAAGTAtccctgaaaaataga---ataggT---------TTATAC-AGTG--TGACATGGA-TAATATATTCACAT-ACACACCTATACATTATAAACTTTCGGGAAA---------CCAAGCTGTCACTCTAGCAtg---tttccattattttccc----ccattttctaTCCACCGGTATAACCCGCCAAAAAGACACATCTCCGGC--AGGAAAAT------GGACG---ACACATAATTATTTCAG------------T--AGTACGCTAAGCACTCATGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    171147 417 -   201088 t-cttacCTTTTCTGGCAATCCAATACGATGGAAACGTCTTCCAATGTTTGGATATCTTGACTGAATCCTCTCTTTAGTACGAGCCTTGGCACGGTCGATACGATCGTAGTAAAATGTTGGAGCAGCTAATTCAACAACTCCAGTTGGTGGCACAATTCccaattttagtttttcatcaaCCAACGAAGCTCCGACTTCCGACAAGTATCCCtgtaaaaagaa------att---------gtaTTATATTTGTCAACATATA-------------AT-ATATAA-TCCACATAA-TAAGTTTCGGGAAA---------CCTAACCGTCAATCCAGTATG---TTTCCATCATTCTTTC----CCG---TCTGTCCACAGGCAAAACCCGCCAAAAAGACACATTTACGGCAGAGGAAAATG---GACGACG---ACACATAATTATTTCAG------------T--AGTACGCTAAGCACTCATGCG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3227920 401 +  4147112 TGCTTACCTTTTCTGGCAATCCAATGCGATGGAATCGTCGTCCAATATTCGGGTATCTCGACTGAATCCTTTCTTTAGTACGTGCCTTGGCGCGGTCGATACGATCGTAGTAGAAAGTTGGAGCAGCCAATTCAACAACACCAGTTGGTGGAACGATTCCCAATTTGAGTTTCTCATCAACCAGTGAAGCACCGACTTCCGACAAGTATCCCTGCAAAAAAGT------GGT---------TTAGTA-ATTCGATAGGACATA-AA-------AACAT-ATATA-----ACATGT-AAAGTTTCGGGAAA---------GCT----GTCAATCCAGCATG---TTTCCATCATTCTCTC----CCG---CCTATCCACCGGTAAATTCACATAAAAAGGC-------------AGGAAAATG---GACGACG---ACACATAATTATTTCAG------------T--AGTACGCTAAGCACTCATGCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   390267 406 +   591668 tACATACCTTCTCCGGTAATCCAATTCGATGAAAGCGCCTTCCAATATTCGGGTATCTCGATTGAATCCTTTCCTTGGTGCGAGCCTTCGCACGATCAATACGGTCATAGTAAAACGTTGGGGCTGCCAATTCCACAACACCAGTTGGCGGAACAATTCCCAGCTTTAGCTTCTCGTCCACCAAAGAGGCTCCAACTTCCGACAAATATCCCTGCAAAAATTA---CACGGC---------ATTGCA-A-----CAGCGTTGACTA-------CATTT-GTGTAC----ACATAA-TGACTCTAGGAAAG---CGCCGCCGCCGCCGTCAATCCAAC---ATGTTTCCATCATGATGAA----------TACACACACAGTTATAACCAACTT--------------------GGGATGGTGCGCGGGGAGG---ACACATAATTATTTCAG------------TAGAGTACGCTAGACACTTTTGCG
i caeJap4.Scaffold17934 I 15035 C 0

a score=-6563.000000
s ce10.chrX              4979775 48 + 17718866 CCAACACTACCA-ACAACCTAGGCCCTCCAACAACAGCAGCGCATCAT-----------------C
s caeRem4.Crem_Contig0   1842710 31 -  4500979 -CCACACCACCTCACTACCTAGG-----------------CGCATCAT----------------C-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409    171564 49 -   201088 ------CCACCCTTCTACCTAGGCCCT---------ACTGCGCATCATATATCGGAAAGGGGGG--
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3228321 29 +  4147112 ------CCACCCTACTACCTAGGCCCC-------------CGCATCAT------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   390673 27 +   591668 ----CAATGTCcgtccacacacacaca-------------caca----------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10317870 11 + 21540570 I

a score=65854.000000
s ce10.chrX              4979823 616 + 17718866  
s cb4.chrX              10317881 673 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1842743 669 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409    171613 663 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3228350 688 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   390700 581 +   591668  
i caeJap4.Scaffold17934 C 0 I 102

a score=-80725.000000
s ce10.chrX              4980439 580 + 17718866  
s cb4.chrX              10318554 285 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1843412 382 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    172276 297 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3229038 406 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   391281 102 +   591668 I

a score=19373.000000
s ce10.chrX              4981019 22 + 17718866 CCGTGTCACTTTTTTGGACATG
s cb4.chrX              10318839 22 + 21540570 cctTGTCAATTTCTGGGACATG
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   1843794 21 -  4500979 CCTTGTCAAATTCT-GGACAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    172573 21 -   201088 CCTTGTCAATTTCT-GGACAAG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3229444 21 +  4147112 CCTTGTCAAATTCT-GGACATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   391383 21 +   591668 CCTTGTCAATTTCT-GGACGAG
i caeJap4.Scaffold17934 I 102 C 0

a score=-2095.000000
s ce10.chrX              4981041 13 + 17718866 ATGCCAGCCGGGC----
s caeRem4.Crem_Contig0   1843815  6 -  4500979 -------ACGGCT----
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold409    172594  6 -   201088 -------TCGGCT----
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3229465  6 +  4147112 -------TCGGCT----
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   391404 13 +   591668 ----CTGTCTGCCTCGT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10318861 16 + 21540570 I

a score=50806.000000
s ce10.chrX              4981054 288 + 17718866 ---AAAGG--ACGACATGCCCATCAAACTTTCAAGC--------CAGTTGTCCTCCTTTTTTAGTGTGTGTCG---GCTATCCTT------TTTTGCAATTCTCGCcacacacacacacacacacacacCATCCAACAA-----CAACTCTTTGAACCAAAGCAACAAA--CATTCT--CTCCAGAAATCAATAGTGACAGGGT-------GCACATACACGCGCCAACCGGCGAACTCCTTTT----TTGTC-------TTCTGGTCGCGCAAGCTTGACAAAGACATAGAATCA------GCAGCGGCGGAA-CAACGAAAAAAG------------------ACACG--------------TGAACGATT-------GAA
s cb4.chrX              10318877 259 + 21540570 -----aggacaCAACGTGCCCATCAAACTTTCGCC---------------CCGTCCTTTTTT-----GTCCCT---TCTATCTTT----TTTGCAACTATCCTCTCTCCCACCAAACAAA------------CCAACAA--------------ACACC-AACTAGCACT--TCTTTT--CTCCAGAAATCAATA-------GGT-------GCACACAC------------CCGAACTCTTTTT--------G-------CTCCTGTCA-----GCTAAAAAACGGCTGGAGGACAGAATTGGAGAGGTGGAAG-AGAATAAAAAACACTTGCACACATACACTAACACG--------------TGAATAATTTCAAGAAGAA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   1843826 246 -  4500979 -----AGG--ACGACGTGCCCATCAAACTTTCGACT--------TGGTCGTCGTCCtttttt------tGTCC---ACTATccct----ttttttgcaattctcACCCCGCCACGACAA--------------CAACAA--------TTCCTTGAACC-AACCAACAAA--CATGCT--CTCCAGAAATCAATAGTGACAGGGT-------GCACACACGCCGACT-----gcgaactcttttt----ttcat-------ctgctTTCAT----ACCAAAGAAAGGC-AGAGGACA--------------GAGA-AGACTAAAAAAC------------------ACACG--------------TGAAGGATT-------GAA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold409    172606 279 -   201088 ------GG--ACGACGTGCCCATCAAACTTTCGACTACTTG--GTCGTTGCCGTCttttttt-----GTGTCC---TCTATCCCT--CCTTTTTTGCGATTCTCACCCCAcgacaacaa--------------caaaaaagaaagaattctcCGA----AACCAACAAA--CTTGCTTGCTCCAGAAATCAATAGTAACAGGGT-------GCACACACGCC---------TCGaactcctcttcctctcctt-------cttcaGTCTC-TGCACCgaaaa-----aggaaagca------gagag---gaat-ataacaaaaaac------------------acgtgaaagaagaagaagaagaaggatt-------gAA
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3229477 256 +  4147112 ------GG--ACGACGTGCCCATCAAACTTTCGACT-----------TTGTCGTCTTTCT--------TGTCC---GCTATCCCT---TTTTTACGCGATTCTCACCCCACGacaacaa--------------t----------tctttttttgaacc-aacCAACAAA--CATGCT--CTCCAGAAATCAATAGTAACAGGGT-------GCACACACACT---------CCGAactccttccattttttttgtgtccgCTTCTGTTGT-TGAACCaaagaaagacagaaaagca------gagag---aaagaagaataaaaaac------------------acacG--------------TGAAGGATT-------GAA
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   391417 270 +   591668 GTGGTGTG--GTGTGGTGCCCATCAAACTTTCGACT---TGGTGTCGTTGTCGTGCGTTTTGTGGTTGTGCCCATATCTATCCTCTTCTTTTTGTGCAACTCTTTCGCTCTTCAAAC----------------CAACCG-----------------CC-AAACAACAAACTCCTTCT--CTCCAGAAATCAATAGAGACCGGGGGAGACAAGCGCACACGTTC--------CCCAACTCCTTCT----------------ATaaggaagcaagaaagaaagaaagaaagaaaaata------agaaga--aaaa-aaaaggagaaaa------------------acaCG--------------TGAACAAAC-------GGA
i caeJap4.Scaffold17934 C 0 I 41

a score=9319.000000
s ce10.chrX              4981342 69 + 17718866 GCAGACGAGAAGAGAAGAAGAAGAACGGCATCTGTTTAACGAGGGTAGAAACTTTCTCTTCATTGTGCT
s cb4.chrX              10319136 32 + 21540570 GCaaacg--------agaagaagaacaacATCCCGTTTAC-----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1844072 44 -  4500979 GCAGACG-----------AGAAGAACGGCATTTCGTTAATAA--GTAGAAACACT------------CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    172885 52 -   201088 GCAGACG-----------AGGAGAACGGCGTCTTGTTAACAA--Ctagaaactctttt----tcttcaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3229733 52 +  4147112 GCAGACG-----------AGGAGAACGGCATCTCGTTAACAT--CTAGAAACTCTTTT----TCGTCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   391687 41 +   591668 I

a score=-5013.000000
s ce10.chrX              4981411 30 + 17718866 CGCAGCTCAGCCAATCACCTGC-C----------CTTTCTA--------
s cb4.chrX              10319168 31 + 21540570 CAGAATTCTCCTCTTCCTGTGATT----------TTTTCTA--------
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   1844116 31 -  4500979 TAGCACTCGACTTGCCCCCTGAGT----------CCTTCCG--------
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold409    172937 31 -   201088 tagtACTCCATTCGTCCTTCGTCT----------CTTCCTG--------
i caeSp111.Scaffold409  C 0 I 17
s caePb3.Scfld02_0       3229785 22 +  4147112 CAGCACTCTACTTGCCCTCCGT---------------------------
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17934   391728 49 +   591668 CTCAACTCACCTCACCACACCACTCCAAAACCAACCTTCTATTGCTCAA
i caeJap4.Scaffold17934 I 41 C 0

a score=1169.000000
s ce10.chrX              4981441 15 + 17718866 --TTCT-------TTTCTAAAACA
s caeRem4.Crem_Contig0   1844162 22 -  4500979 --TTCTGAGGAAAATTCAAAGCCA
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold409    172985 17 -   201088 --ttct-----AAATTCGAATCCA
i caeSp111.Scaffold409  I 17 C 0
s caePb3.Scfld02_0       3229824 17 +  4147112 --TTCT-----AAATTCAAAGCCA
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17934   391777 15 +   591668 TTTTCC-----CATCTAAAA----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10319199 39 + 21540570 I

a score=74831.000000
s ce10.chrX              4981456 467 + 17718866  
s cb4.chrX              10319238 471 + 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   1844184 501 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    173002 493 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3229841 500 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   391792 489 +   591668  
i caeJap4.Scaffold17934 C 0 I 466

a score=-5250.000000
s ce10.chrX              4981923 118 + 17718866 TTA------------GGGAATTAAATCTAGGAAAAAGTA-TACGA-------------TGTTCGT-----ATAAGTACT---------------------CAGTCAAGCTC--------TAC-----------------------TTCCA---AACAACTTCCCACTACTCATCCACCATTCTTACGCAACTTTTCAAAAAGAT
s cb4.chrX              10319709 141 + 21540570 gaacaaaaaaagtagAGTTTTTATTCTTGAGAAAACCTACAA----------------CTCAAGA-----ACTAGTACT-------------ATTTCC--CAAGCCTCTTT--------TGC----ACATATACATATATTCTAATTCCA---AAGTAGGT-------TTT-CCACCAtttttttGGCGACATTTCAAAG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1844685 153 -  4500979 gaa------------agttATCAACACTGGGAAAACGTACTATTC-------------TTCTCGT-----ACTAGTCCTC----------Ccattttt--gacacattttc--------taCTAAAAACTAGTCACTTATTCTTCCTCCCTCTTACTAGCTCAAACAACTT-TCATCTATTCTTGCGCAACATTTCAAAGATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    173495 144 -   201088 aaa------------agtaatcaaaaatgagaaaaagtacTATTC---------TTGTTTCTTGA--CACACTCGTCTTCTATactttcatcattttca-aaaatagatta--------ttc---------------ttcttttccaccA---AACACATTC----------TCAACTATTCTTGTGCAACATTTGAAAGTGCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3230341 173 +  4147112 caa------------agtaatcaaaaatgggaaatagTACTATTCCAACCCATGTTGCTTTTCGAATCGTACTATACCCCTCTACTTTCatcatttctagaaaatagattcgcttatttttc---------------ttcttttactaca---ataaaattcaaactaCTT-CCAACTATTCTTGCGCAACATTTCAAAGAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   392281 466 +   591668 I

a score=130103.000000
s ce10.chrX              4982041 670 + 17718866  
s cb4.chrX              10319850 596 + 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   1844838 630 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 48
s caeSp111.Scaffold409    173639 650 -   201088  
i caeSp111.Scaffold409  C 0 I 75
s caePb3.Scfld02_0       3230514 614 +  4147112  
i caePb3.Scfld02_0      C 0 I 96
s caeJap4.Scaffold17934   392747 690 +   591668  
i caeJap4.Scaffold17934 I 466 C 0

a score=-9138.000000
s ce10.chrX              4982711 31 + 17718866 ATTCCTAGTAGCTAAATT--------TTCAACTT---CAAAA
s cb4.chrX              10320479 27 + 21540570 --------aaaCTCTAGT------AGCCC-CCTTGAGCAACA
i cb4.chrX              I 33 I 1
s caeRem4.Crem_Contig0   1845516 33 -  4500979 CTCCAAAGCAACTCAATT--------CTC-ACTTATACGAAA
i caeRem4.Crem_Contig0  I 48 I 1
s caeSp111.Scaffold409    174364 36 -   201088 TTGAGCAGTAGCTCGAAACTATG-AGCTC-TCTC---CAAA-
i caeSp111.Scaffold409  I 75 I 6
s caeJap4.Scaffold17934   393437 29 +   591668 ---------AATCCATGTATGTGAATTTC-ACGT---CACAC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3231128 96 +  4147112 I

a score=788.000000
s ce10.chrX              4982742 77 + 17718866 TT-CACATG----ACTAGTGT------ACATACCTTTACTCTAT-TGGACT-----CTTCCC----CC-GGTTGCTATGCGACAAATAACGATTCCAGC
s cb4.chrX              10320507 70 + 21540570 GGACACATGACCTGCTCTCCA------GCATACCTATGCTCTTT----------------------TT-GGTTGCCAAGCAatcctcttcctcctcttt
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1845550 85 -  4500979 TG-CACATGACAAACTCTCCACCCTCTGCATACCTATGCTCTTTGAGAGCT-----C-------GATT-GGTTGCCAAGCAACAAATAACGATTCCagt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409    174406 79 -   201088 TGACAGAAG---TACTCTCCT------GCATACCTATACTCTATAGAGGCT-----CGTCCCAGGACG-GGTTGCCAAGCAACAAATAACGATT-----
i caeSp111.Scaffold409  I 6 C 0
s caePb3.Scfld02_0       3231224 85 +  4147112 TG--AGAAGGTCCACTCTCCT------ACATACCTATGCTCTATAAGTGCTCTCTGCTTCCCGAAACGAGGTTGCTATGCAACAAA-AATGATT-----
i caePb3.Scfld02_0      I 96 C 0
s caeJap4.Scaffold17934   393466 63 +   591668 ----------------TTTAT------CCATGTCTATACCCCCT-----TT-----CGCTCCG---CA-CGTTGCTATGCAACAAAGAGAAATTCTAGC
i caeJap4.Scaffold17934 C 0 I 40

a score=-6806.000000
s ce10.chrX              4982819 62 + 17718866 TTACCCGCGCGCCCTCTC--TCTCTCCTGCTCAATCTTCCCGCC------TCATTTTTATATGT------------ACATGT
s cb4.chrX              10320577 68 + 21540570 tt-----cccATCCGCTCAGTTTGCTCTGCACGCATT-TCAGTT------TTATTAT--TATGAATCTATGCGAATATACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1845635 53 -  4500979 ct-----ctcattctctc------ttccGCCTCCATTCTCAGTTTC----TCACTAT--TTTGA------------ATATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    174485 40 -   201088 --------CCATACTCGC--CTCGCTCTCTTCGAATTCTCA--------------------TGA------------ATATTC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3231309 59 +  4147112 -------CCCACACTCTC--TCTgctctttttcacttctcgttctcaaattcacatt--tttta------------atATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   393529 40 +   591668 I

a score=192144.000000
s ce10.chrX              4982881 644 + 17718866  
s cb4.chrX              10320645 605 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1845688 648 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    174525 623 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3231368 587 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   393569 613 +   591668  
i caeJap4.Scaffold17934 I 40 C 0

a score=444746.000000
s ce10.chrX                 4983525 384 + 17718866 TTGCAGCATGCTGAT-GTGCTCCATTGGATGTTCTTCAGCTGTGGCGTGAATAGCAGCTCCCCAGGTCGTCAACTAGTTGTGAGCGAGTCGGTTTCGGAAGATAATCTACACAACCCATCATCACACGCGCTCCGAACCCTATCCCCGGTTTCACCAC--------CGACAGCTAATTCTAGTAGTT------------------------------------------CAACTAGCAGATCTTGCTCACCAGTTGTTCGTGCAGAAACTATCGTTGCTGGCAAGTGGACGCATATATCTGGAAAAGTTTCTGTTAGGCCATTGACGCCTTCTGAAACCGAATCGGTTCTTGACCGTCAACGTCAGAAAAATCGTCG---ATCTTCTAGAAAAGGTT--------T-ATGTGTGCTC------------------------TTGATATGTTTTCTTT-------ATGTTTGACTGTTG-------
s cb4.chrX                 10321250 389 + 21540570 TTGCAGCATGCTGAT-GTGCTCCATTGGATGTTCTTCAGCTGTGGCGTAAATAGCAGCACCCCAGGTCGTCAGCTAGTTGTGAGCGAAGCATTACCGGAAAGTGCCCTACACGATCCACCATCTCAAGCGCTCAGAACTCTCTCACCGGTTTCACCGC--------CGACCGCTAATTCTAGTAGTT------------------------------------------CAACTAGCAGATCTTGTTCACCAGTTGTACGGGCCGAAGCTATCGTTCCTGGCAAGTGGACGCACATTTCGGGAAAAGTCTCCGTTCGGCCTTTGACGCCTTCTGAAACCGAATCGGTCCTTGATCGGCAACGACAGAAAGTTCAACG---ATCTTCTAGAAAAggtt--------t-ctgtgtg------------------------tgtgtgtgctattttttttcaaatttttgtttgat--ttg-------
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1846336 389 -  4500979 TTGCAGCATGCTGAT-GTGCTCCATTGGATGTTCTTCAGCTGTGGCGTAAATAGCAGCACCCCAGGTCGTCAGCTAGTTGTGAGCGAATCATTACCGGAAAGTGCTCTACACGATCCACCATCACAAGCGCTCCGAACTTTATCCCCGGTTTCACCGC--------CTACAGCGAATTCTAGTAGTT------------------------------------------CAACTAGCAGATCTTGTTCACCAGTTGTACGTGCAGAAGCAATTGTTCCTGGCAAGTGGACACacatttctggaaaagtcTCCGTTCGGCCTCTGACGCCTTCTGAAACCGAATCGGTTCTTGATCGTCAACGTCAGAAAAATCGACG---ATCTTCTAGAAAAGGTT--------T-CTGTGTGCTCT--------------------TGtttgatatgtttttttt----ttcttatttggt--TTG-------
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       175148 384 -   201088 TTGCAGCATGCTGAT-GTGCTCCATTGGATGTTCTTCAGCTGTGGCGTAAATAGCAGCTCCCAAGGTCGTCAACTAGTTGTGAGCGAGTCATTACCGGAAGGTGCTCAACACGATCCACCATCACAAGCGCTGCGAACTTTATCTCCGGTCTCACCGC--------CGACCGCTAATTCTAGTAGCT------------------------------------------CAACTAGCAGATCTTGTTCGCCAGTTGTACGTGCAGAGGCTATCGTTCCTGGCAAGTGGACACATATTTCTGGAAAAGTCTCCGTGCGGCCATTGACGCCTTCTGAGACCGAATCGGTTCTTGATCGTCAACGTCAGAAAAATCGACGATCATCTTCTCGAAAAGGTT--------T-CTGTGtgctc---------------------tttttgaattggttgtttt-----------ttggt--ttg-------
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3231955 382 +  4147112 TTGCAGCATGCTGAT-GTGCTCCATTGGATGTTCTTCAGCTGTGGCGTAAATAGCAGTTCCCAAGGTCGTCAACTAGTTGTGAGCGAATCATTACCGGAAAGTGCTCTACACGATCCACCATCACAAGCGCTCAGAACTTTCTCCCCGACTTTATCTC--------CCAGTGTTAATTCTAGTAGCT------------------------------------------CAACTAGCAGGTCTTGTTCACCAGTTGTACGTGCAGAAGCTATTGTTCCTGGCAAGTGGACGCATATTTCGGGACAAGTCTCCGTCCGGCCTTTGACGCCTTCTGAAACCGAATCGGTTCTTGATCGGCAGCGTCAGAAAAATCGACG---ATCTTCTAGAAAAGGTT--------TATTGTGTGCtc---------------------tattcattttgatatggtt-----------ttggt--ttg-------
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      394182 396 +   591668 TTGCAGCATGCTGAC-GTGCTCCGTTGGATGTTCTTCAGCTGTGGCGTGAATAGCAGCTCCCCAGGTCGTCAGCTAGTTGTGAGCGAGTCGGCTCCAGAAGGTGTTCTTCGTGATCCACCGTCGCAAGCCCTACGCACTCTTTCACCCATTTCACCGC--------CTACCGCAAGTTCTAGTAGCT------------------------------------------CAACTAGCAGATCGTGCTCCCCTGTCGTTCGAGCAGAGGCTATTGTGCCTGGCAAGTGGACGCACATTTCGGGAAAAGTATCTGTTCGCCCACTCACACCTTCCGAAACTGAATCAGTGTTAGAACGGCAACGACAGAGAA---GGAA---AAAGTCTAGAAAAGgtt--------t-ttgtgtggttt-------tgaatcaa-----ttttcagtttgtttttctc--atttcctgttttat--ttt-------
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947      559 470 +    15238 TTGCAGCATGCTGATGGTGCTCT-TTGGATGTTCTTCAGTTGTGGCGTGAATAGCAGTTCAACTGGACGTCAACTAGTTGTTAGCGAATCGCTACCCGAAGAGTTATTGCGCGATCCGCCGTCGCAAGCGCTACGAACACTTTCACCAATCTCACCGCCACCAAAACGACCGC--AGTCTAGTGGCGTTGGTGGCGCACCACAACTTTCAACCGCATCGAATAGCTCGACAACAAGTCGATCTTGTTCGCCAACAGTTCGTGCAGAATCTATTGTACCTGGCAAGTGGACACATATTTCTGGACGTGTTTCAGTACGACCATTGACACCATCCGAAGCTCAAGTTTGTCTAGAACgtcaa---aagaaaaagcgaCG---CTCTTCCAAAAAAGGTTCCTATTCat-atatgtatttttttctagtagttcaaaattctatttaTACCGTATACCTC---GCTCTCTTTAGGC--TAGAAAGttg
i caeAng1.scafRNAPATHr2947 N 0 I 34

a score=-7375.000000
s ce10.chrX                 4983909 8 + 17718866 CAATT---TTG
s cb4.chrX                 10321639 8 + 21540570 cAATT---CGA
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1846725 8 -  4500979 AAGTT---TGA
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       175532 8 -   201088 aagTTTCT---
i caeSp111.Scaffold409     C 0 I 48
s caePb3.Scfld02_0          3232337 5 +  4147112 aaatt------
i caePb3.Scfld02_0         C 0 I 3
s caeJap4.Scaffold17934      394578 2 +   591668 tc---------
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947     1029 34 +    15238 I

a score=-6223.000000
s ce10.chrX                 4983917 27 + 17718866 AGAATGCACCCGACTT----------------GTAGATAGT----------------------TT
s cb4.chrX                 10321647  5 + 21540570 --------------------------------------Agt----------------------tt
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1846733  5 -  4500979 --------------------------------------AGT----------------------TC
i caeRem4.Crem_Contig0     C 0 C 0
s caeJap4.Scaffold17934      394580 60 +   591668 -----atacccacctttatttcctattcaTGCATCCATAGTTAATAGAAAACTATCCCGGTGATT
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947     1029 34 +    15238 I
e caePb3.Scfld02_0          3232342  3 +  4147112 I
e caeSp111.Scaffold409       175540 48 -   201088 I

a score=-12098.000000
s ce10.chrX                 4983944 24 + 17718866 GAGAAAAA-------------------------------TTCAATTTTTTTTAAA
s cb4.chrX                 10321652 24 + 21540570 gaatcaga-------------------------------aaatttcgtttCTAGG
i cb4.chrX                 C 0 I 29
s caeRem4.Crem_Contig0      1846738 11 -  4500979 GAATAG--------------------------------------------TTAGA
i caeRem4.Crem_Contig0     C 0 I 14
s caePb3.Scfld02_0          3232345 16 +  4147112 ---------------------------------------agaaaacttttcgaaa
i caePb3.Scfld02_0         I 3 I 31
s caeJap4.Scaffold17934      394640 28 +   591668 GAATTGAA---------------------------TTTCAAtttacattttgaaa
i caeJap4.Scaffold17934    C 0 I 14
s caeAng1.scafRNAPATHr2947     1063 53 +    15238 GAGCAAAATGGATGATCATNNNNNNNNNNTagtaattcaaaattctatttaTA--
i caeAng1.scafRNAPATHr2947 I 34 C 0
e caeSp111.Scaffold409       175540 48 -   201088 I

a score=547332.000000
s ce10.chrX                 4983968  904 + 17718866  
s cb4.chrX                 10321705  973 + 21540570  
i cb4.chrX                 I 29 C 0
s caeRem4.Crem_Contig0      1846763  919 -  4500979  
i caeRem4.Crem_Contig0     I 14 C 0
s caeSp111.Scaffold409       175588  927 -   201088  
i caeSp111.Scaffold409     I 48 C 0
s caePb3.Scfld02_0          3232392  951 +  4147112  
i caePb3.Scfld02_0         I 31 C 0
s caeJap4.Scaffold17934      394682  890 +   591668  
i caeJap4.Scaffold17934    I 14 C 0
s caeAng1.scafRNAPATHr2947     1116 1099 +    15238  
i caeAng1.scafRNAPATHr2947 C 0 I 196

a score=1911.000000
s ce10.chrX                 4984872 1 + 17718866 A
s cb4.chrX                 10322678 1 + 21540570 A
i cb4.chrX                 C 0 I 20
s caeRem4.Crem_Contig0      1847682 1 -  4500979 A
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       176515 1 -   201088 A
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3233343 1 +  4147112 A
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      395572 1 +   591668 A
i caeJap4.Scaffold17934    C 0 I 18
s caeAng1.scafRNAPATHr2947     2411 1 +    15238 a
i caeAng1.scafRNAPATHr2947 I 196 C 0

a score=-447.000000
s ce10.chrX                 4984873 8 + 17718866 AAGCTTAG
s caeRem4.Crem_Contig0      1847683 8 -  4500979 AATCGAAT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       176516 6 -   201088 --ACTCAT
i caeSp111.Scaffold409     C 0 I 2
s caePb3.Scfld02_0          3233344 6 +  4147112 --GCACAT
i caePb3.Scfld02_0         C 0 I 18
s caeJap4.Scaffold17934      395591 8 +   591668 ATATTCag
i caeJap4.Scaffold17934    I 18 C 0
s caeAng1.scafRNAPATHr2947     2412 8 +    15238 aaaattag
i caeAng1.scafRNAPATHr2947 C 0 C 0
e cb4.chrX                 10322679 20 + 21540570 I

a score=-4403.000000
s ce10.chrX                 4984881 10 + 17718866 GAGATGCCAA------------
s caeRem4.Crem_Contig0      1847691 10 -  4500979 GTTTTTCCTG------------
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       176524  8 -   201088 --ACTATTTG------------
i caeSp111.Scaffold409     I 2 I 2
s caeJap4.Scaffold17934      395599  9 +   591668 -aaaaacccg------------
i caeJap4.Scaffold17934    C 0 I 3
s caeAng1.scafRNAPATHr2947     2420 22 +    15238 aaaattccGGAAACTTTTCAAT
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caePb3.Scfld02_0          3233350 18 +  4147112 I
e cb4.chrX                 10322679 20 + 21540570 I

a score=-1416.000000
s ce10.chrX                 4984891 9 + 17718866 TAAAACTTT
s cb4.chrX                 10322699 9 + 21540570 TAAAATCAG
i cb4.chrX                 I 20 I 2
s caeRem4.Crem_Contig0      1847701 3 -  4500979 ------TTA
i caeRem4.Crem_Contig0     C 0 I 2
s caeSp111.Scaffold409       176534 9 -   201088 TAAAGGTAA
i caeSp111.Scaffold409     I 2 C 0
s caeJap4.Scaffold17934      395611 7 +   591668 aaaaaat--
i caeJap4.Scaffold17934    I 3 C 0
s caeAng1.scafRNAPATHr2947     2442 9 +    15238 TAAGATTTT
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caePb3.Scfld02_0          3233350 18 +  4147112 I

a score=139173.000000
s ce10.chrX                 4984900 113 + 17718866 CAAATGTTATAT------------------------------TTTCAGGACGACTTGAACAAATTTCGTCAGCGTATCGACAACAATGTTGAGCAACAAAGAGAATATAGTGAGATGATGGCTGCTCTCCAAAACAAGGTTAT
s cb4.chrX                 10322710 113 + 21540570 GAGagacaaaaa------------------------------tttcaggacgACTTGAACAAATTCCGCCAACGTATTGACAACAACGTTGAGCAACAAAGAGAGTACAGCGAAATGATGGCTTCTCTCCAAAACAAGGTAAC
i cb4.chrX                 I 2 I 15
s caeRem4.Crem_Contig0      1847706 120 -  4500979 GAAAAACATACATATC-----------------------TTGTTTCAGGATGACTTGAACAAGTTCCGTCAACGTATTGACAACAATGTTGAGCAACAAAAAGAATACAGTGAGATGATGGCTGCTCTTCAAAACAAGGTAAC
i caeRem4.Crem_Contig0     I 2 I 24
s caeSp111.Scaffold409       176543 111 -   201088 --GAAACTGGTT------------------------------TTATAGGACGACTTGAACAAGTTCCGTCAACGTATCGACAACAACGTTGAGCAACAAAGAGAGTACAGCGAAATGATGGCTGCACTTCAAAACAAGGTAAT
i caeSp111.Scaffold409     C 0 I 20
s caePb3.Scfld02_0          3233368 113 +  4147112 CATACGTTTAAT------------------------------TTACAGGACGACTTGAACAAGTTCCGTCAACGTATTGACAACAATGTCGAGCAACAACGTGAATACAGCGAGATGATGGCTGCTCTTCAAAACAAGGTAAT
i caePb3.Scfld02_0         I 18 I 23
s caeJap4.Scaffold17934      395618 109 +   591668 ---aaactaaa-------------------------------tTGTAGGACGATCTGAACAAATTCCGTCAACGTATTGACAACAATGTCGAGCAACAAAAAGAGTATAGTGAGATGATGGCTGCTCTTCAAAACAAAGTAAC
i caeJap4.Scaffold17934    C 0 I 23
s caeAng1.scafRNAPATHr2947     2451 141 +    15238 CTGAGACTACAAATTCATTAGAGCTCcataaaattccaaattttctaggatGACCTGAACAAGTTCCGTCAAAGAATCGATAACAATGTCGAACAACAACGTGAATATAGCGAAATGATGGCTGCACTTCAAAACAAAGTT--
i caeAng1.scafRNAPATHr2947 C 0 C 0

a score=0.000000
s ce10.chrX                 4985013 18 + 17718866 TGTGTGATGTGTTTCTTA
e caeAng1.scafRNAPATHr2947     2592  0 +    15238 C
e caePb3.Scfld02_0          3233481 23 +  4147112 I
e caeJap4.Scaffold17934      395727 23 +   591668 I
e cb4.chrX                 10322823 15 + 21540570 I
e caeSp111.Scaffold409       176654 20 -   201088 I
e caeRem4.Crem_Contig0      1847826 24 -  4500979 I

a score=534648.000000
s ce10.chrX                 4985031 567 + 17718866  
s cb4.chrX                 10322838 569 + 21540570  
i cb4.chrX                 I 15 I 37
s caeRem4.Crem_Contig0      1847850 559 -  4500979  
i caeRem4.Crem_Contig0     I 24 I 33
s caeSp111.Scaffold409       176674 549 -   201088  
i caeSp111.Scaffold409     I 20 C 0
s caePb3.Scfld02_0          3233504 576 +  4147112  
i caePb3.Scfld02_0         I 23 I 35
s caeJap4.Scaffold17934      395750 592 +   591668  
i caeJap4.Scaffold17934    I 23 C 0
s caeAng1.scafRNAPATHr2947     2592 628 +    15238  
i caeAng1.scafRNAPATHr2947 C 0 C 0

a score=-483.000000
s ce10.chrX                 4985598 41 + 17718866 TTATCAATAAAATGCTAGAATAAAACTAAAACTTATCTGCT
s caeAng1.scafRNAPATHr2947     3220 36 +    15238 TTTTCTAGAAC---CCctaacaaaatttta--ttgattttt
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caePb3.Scfld02_0          3234080 35 +  4147112 I
e caeJap4.Scaffold17934      396342  0 +   591668 C
e cb4.chrX                 10323407 37 + 21540570 I
e caeSp111.Scaffold409       177223  0 -   201088 C
e caeRem4.Crem_Contig0      1848409 33 -  4500979 I

a score=225434.000000
s ce10.chrX                 4985639 232 + 17718866 TTTCAGAATTTGGCTCAATACCTCAGCGATGAGCAGCGTAAAATGCTAGATCTCTGGACAGAGCTTCAAAGAGTCCGCAAACAGTTCTCTGATTTGAAAACCCACACAGAAGAAGATCTTGACAAGCAAAAAGCTGAATTCACTCGTGCCATTCGGAATGTCAACAACATCTCAAGAAACGCCGCATTTTCCGCAGG---------------------------------------------------------------------TGCTGGTGATGG------------------TCTTGGGCTTTAC------------------------------------------------------------------------------------------------GGATTGGAAG
s cb4.chrX                 10323444 232 + 21540570 tttcagaatttggccCAATATCTGAGCGATGAGCAACGCAAGATGTTGGACTTGTGGACTGAACTTCAACGTGTTCGCAAGCAATTCTCTGATCTCAAGGTCCAGACCGAGGAGGACCTCGACAAGCAGAAGACTGAGTTCACTCGTGCTCTTCGCAACGTCAGCAGCATTTCTCGCAATGCTACTTTCACCGGAGG---------------------------------------------------------------------AGCAGGAGATTC------------------GCTTGGTCTATTC------------------------------------------------------------------------------------------------GGATTGGATG
i cb4.chrX                 I 37 C 0
s caeRem4.Crem_Contig0      1848442 232 -  4500979 ATTCAGAACTTGGCCCAATATCTCAGCGACGAGCAACGCAAGATGCTCGACTTGTGGACTGAACTCCAACGTGTTCGCAAGCAATTCTCTGACTTGAAAGTGCAAACAGAAGAAGATCTTGACAAGCAAAAATCCGAGTTCACTCGTGCACTTCGCAATGTCAGTAACATGTCTCGTAATGTGACATTCACTGGTGG---------------------------------------------------------------------AGCTGGAGATTC------------------ACTTGGTCTCTAT------------------------------------------------------------------------------------------------GGATTGGATG
i caeRem4.Crem_Contig0     I 33 C 0
s caeSp111.Scaffold409       177223 226 -   201088 ------AACTTGGCTCAATATCTGAGTGATGAGCAACGGAAGATGCTTGATTTGTGGACTGAACTCCAACGTGTTCGCAAGCAGTTCTCCGATTTGAAAGTTCAAACCGAGGAAGATCTGGACAAGCAGAAGTCTGAGTTCACTCGTGCACTTCGCAATGTCAGCAGCATGTCCAGAAACGTGACATTCAATGGAGG---------------------------------------------------------------------AGCTGGGGACTC------------------TCTTGGTCTTTAT------------------------------------------------------------------------------------------------GGTTTGGATG
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3234115 232 +  4147112 TTCCAGAACTTGGCTCAATATCTCAGTGATGAGCAACGCAAAATGCTTGATTTGTGGACTGAACTCCAACGCGTCCGCAAACAATTCTCTGATCTGAAGGTTCAAACTGAGGAGGATCTTGACAAGCAGAAGTCCGAATTTACTCGCGCTCTCCGTAATGTCACCAGCATGTCAAGAAACGTCACTTTCTCTGGAGG---------------------------------------------------------------------AGCTGGTGACTC------------------TCTTGGTCTCTAC------------------------------------------------------------------------------------------------GGACTTGATG
i caePb3.Scfld02_0         I 35 C 0
s caeJap4.Scaffold17934      396342 226 +   591668 ---CGCAATTTGGCTCAGTACTTGAGCGATGAGCAGCGCAAGATGCTTGATTTGTGGACAGAGTTACAACGTGTCAGAAAGCAATTTTCCGACTTGAAATCCCAAACCGAAGATGACCTTGACAAGCAAAAATCGGAATTTACTCGCGCTCTGCGCAATGTGAGCAACATTTCGAGAAACGCCAATGTTTCTGGAGG---------------------------------------------------------------------AGTTGGTGACT---------------------TGGGAATTTAC------------------------------------------------------------------------------------------------GGACTGGATG
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     3256 415 +    15238 ttctagaatcttGCGCAATATTTGTCTGATGAGCAAAGAAAGATGATGGATTTGTGGACTGAACTTCAACGGGTTCGCAAACAATTCGCTGACCTCAAATCGCAAACCGAAGAAGATCTTGATCGTCAGAAATCGGAATTCACTCGCGCTTTGAGAAATGTGCACAACATTTCAAGAAACGTCAATATTACTGCTGGCGAGGTGAGAGAcacactcaaaaatctcataaatatttaattCTTTTTGCAGGGTCTTCAAGCTGCTGCAGCTGGCGGATCAGCTGGTTTGGGAGGACTTTTGGGACTTTACGNNNNNNNNNNGGAATTGATGAAGAAATATGAAGAGTCAATCGagagaaatattgaattggAATCGAAAGGTGATGaggcgcagagaaaaatcgcTGAATTGGAAG
i caeAng1.scafRNAPATHr2947 C 0 I 115

a score=2377219.000000
s ce10.chrX                 4985871 1841 + 17718866  
s cb4.chrX                 10323676 1780 + 21540570  
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1848674 1780 -  4500979  
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       177449 1780 -   201088  
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3234347 1780 +  4147112  
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      396568 1786 +   591668  
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     3786 1870 +    15238  
i caeAng1.scafRNAPATHr2947 I 115 I 382

a score=806.000000
s ce10.chrX                 4987712 10 + 17718866 CACA---GGAA---------------------------------CC
s cb4.chrX                 10325456 13 + 21540570 CACCACTGGAA---------------------------------CT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1850454 13 -  4500979 AACTACTGGAA---------------------------------CT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       179229 13 -   201088 CACTACTGGAA---------------------------------CT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3236127 13 +  4147112 CACAACTGGAA---------------------------------CT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      398354 46 +   591668 TCAAACCGGAATAGCCGGACGTGATCCAAGAGATATCAGCGGATCT
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947     5656 382 +    15238 I

a score=102366.000000
s ce10.chrX                 4987722 117 + 17718866 GATGGAGGTGCTTTCGGTGATCGCAGCAGTGTTGCTGATCCGTCGAGAACTCGCGGAGCAGCTGGAAGCACCGTTTTCGTGCCAGCTGCCGAGGACATTGAGAGCAGAGGTGGAGGT
s cb4.chrX                 10325469 117 + 21540570 GATGGAGGAGCTTTCGGAGATCGTAGCAGTGTTGCTGACGCCAACAGAAGCCGTGGAGCTGCTGGAACTGATGTCTATATTCCAGCTGCTGAGGATATTGAGAGCCGTGGAAGTGGT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1850467 117 -  4500979 GATGGTGGTGCATTTGGAGATCGTAGCAGTGTTGCCGACTCTAACAGACAACGTGGAGCTGCTGGAAGCAATGTCTACATCCCAGCCACTGAAGATATTGAGAGCAGAGGAGGAGAT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       179242 117 -   201088 GATGGTGGAGCCTTCGGAGACCGTAGTTCTGTTGCTGACGGAAGCCGTAGCCGTGGTGCCGCCGGAAGCAATGTCTTCATTCCAGCCGCTGAAGATATTGAGAGCCGTGGTGGAGAT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3236140 117 +  4147112 GATGGTGGAGCTTTCGGAGACCGTAGTTCTATTGCTGATGCTAACAGAAGCCGTGAAGCTGCTGGAACTGATGTCTACATCCCAGCTGCTGAAGATATCGAGAGCAGAGGTGGTGAT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      398400 111 +   591668 GAAGGAGGAGCTTTCGGTGATCGCAGCGCTCTTGGAGACTCCACCAGAAGCCGAGGAGCACCAGGAAGCAGTATCTACGTTCCATCTGACGATGTTAC------CCGGGAAGGAGAC
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     6038 117 +    15238 GATGGTGGAGCTTATGGTGATCGCAGTTCTTTGGGAGATTCTACAAGATCTCGCGGCGCTCCAGGAAGTGAAATCCTTATTCCAAGCGCGGAAGATGTTCGATCAGGTGATGGAAGT
i caeAng1.scafRNAPATHr2947 I 382 I 300

a score=1062324.000000
s ce10.chrX                 4987839 771 + 17718866  
s cb4.chrX                 10325586 777 + 21540570  
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1850584 777 -  4500979  
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       179359 774 -   201088  
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3236257 774 +  4147112  
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      398511 768 +   591668  
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     6455 809 +    15238  
i caeAng1.scafRNAPATHr2947 I 300 I 792

a score=5950.000000
s ce10.chrX                 4988610 72 + 17718866 TCTAAAGTTCGCGACTGTAAGTTT-----------AATCCTTT-TTAATGTTAATAGATGAATAATAACCGTTTCAAT-----TTTCAG
s cb4.chrX                 10326363 69 + 21540570 GCTAAAGTCCGCGACtgtaagttt-----------tttgtttt-tc--------aaattgtatgatcatcgtttaaaaaattctttcag
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1851361 71 -  4500979 TCCAAAGTCCGAGACTGTGAGTTTC---ATAA--ATCTATTTTAAC--------TAATTCAgacctaatttttcaaaa-----tttcag
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       180133 62 -   201088 TCCAAAGTCCGCGATTGTAAGTTTC---AGAA--ACATACTTC-tc----------------tattaatttttgttat-----ttgtAG
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3237031 66 +  4147112 TCTAAAGTCCGCGATTGTAAGTTT-----------TGTAGTCC-TCAGTGTACTAAA---AAtactgatttctt---t-----tttcag
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      399279 68 +   591668 TCGAAAGTTCGCGATTGTAAGTTGCCTTAGAATCAAATATTTA-TT-------AGAACTATACGATTATT-------------TTTCAG
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947     7264 792 +    15238 I

a score=1027951.000000
s ce10.chrX                 4988682 928 + 17718866  
s cb4.chrX                 10326432 867 + 21540570  
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1851432 920 -  4500979  
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       180195 876 -   201088  
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3237097 875 +  4147112  
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      399347 966 +   591668  
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     8056 940 +    15238  
i caeAng1.scafRNAPATHr2947 I 792 I 405

a score=410.000000
s ce10.chrX                 4989610  5 + 17718866 GAACC---------------
s cb4.chrX                 10327299  5 + 21540570 GAGCC---------------
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1852352  5 -  4500979 GAACC---------------
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       181071  5 -   201088 GAACC---------------
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3237972  5 +  4147112 GAACA---------------
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      400313 20 +   591668 GAGCTCCAGCTGGTGGCCAG
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947     8996 405 +    15238 I

a score=299610.000000
s ce10.chrX                 4989615 240 + 17718866 AGTGTCATCGGAGGAGGTCCATCAGCTCAACGTTCAGGAGCATACGATC---CAAGCAGTGGA---GGTGTGAT------CGGATCTGGAATTAGTGGAGGACCAGGCGGATCTGATTTCGGTCGTGAAATCGAAATAGGTCGCGGTGACTCGGAT----------------CAATC---CGATGTTGCTTATCCTCGTTCAGTTCCGTTCCCACCATCTGCTGACTTTAGCAGCGGACGCCCA------GGCGCTGCATCTGGTGGGTTCTTTTTA
s cb4.chrX                 10327304 240 + 21540570 AGTGTCATTGGTGGAGGACCATCCGCTCAACGCTCGGGAGCCTACGATC---CAGTCAGTGGA---GGTGGTGC------TGAAACCGGAATCAGTGGAGGACCAGGCGGATCTGATTTCGGTCGTGAAATCGAAATAGGTCGCGGTGACTCGGAC----------------TTGTC---CGATGTTGCTTATCCTCGTTCGGTTCCGTTCCCACCATCTGCTGATTATAGCAGTGGACGTCCA------GGCGCAACATCTGGTAAGCTATACAAA
i cb4.chrX                 C 0 I 1
s caeRem4.Crem_Contig0      1852357 239 -  4500979 AGTGTTATCGGTGGAGGACCATCTGCACAACGCTCGGGAGCGTACGATC---CAGCCAGTGGA---GGTGTTAT------TGGAACTGGAATCAGTGGAGGACCAGGCGGATCTGATTTCGGTCGTGAAATCGAAATAGGTCGCGGCGACTCGGAT----------------CAATC---TGATGTTGCTTATCCTCGTTCAGTTCCATTCCCACCATCTGCTGACTTCAGCAGTGGACGTCCA------GGCGCTACATCTGGTGAGTT-TGTACC
i caeRem4.Crem_Contig0     C 0 I 1
s caeSp111.Scaffold409       181076 240 -   201088 AGTGTCATTGGTGGAGGACCAGCTGCTCAACGTTCAGGAGCCTACGATC---CAACCAGTGGA---GGTGGTAT------CGGAACTGGAATCTCTGGAGGACCAGGCGGATCTGATTTCGGTCGTGAAATCGAAATAGGTCGCGGCGACTCGGAT----------------CCATC---CGACGTTGCTTATCCTCGTTCCGTTCCATTCCCACCATCTGCTGATTACAGCGGTGGTCGTCCA------GGTGCAACATCTAGTAGGTTTCTTATA
i caeSp111.Scaffold409     C 0 I 1400
s caePb3.Scfld02_0          3237977 240 +  4147112 AGTGTGATTGGTGGAGGACCATCTGCTCAACGTGCAGGAGCATACGATC---CAAGCAGTGGA---GGTGGTAT------TGGTTCTGGAATCAGTGGAGGACCAGGCGGATCTGATTTCGGTCGTGAAATCGAAATAGGTCGCGGCGACTCGGAT----------------CTTTC---CGATGTTGCTTATCCTCGTTCAGTTCCATTCCCACCATCTGCTGACTTCAGCAGCGGTCGTCCA------GGCGCAACATCTGGTAGGTTACAGAAT
i caePb3.Scfld02_0         C 0 I 2
s caeJap4.Scaffold17934      400333 245 +   591668 AGCGTTCTCGGTGGAGGACCTTTAGCCCAGCGTGCTGGAGCATACGATC---CAAGCAGCGGACCTAGTGGCAT------CGGATCCGGAATCGGCGGAGGACAAGGCGGACCTGATTTCGGTCGTGATGTCGAAATAGGTCGCGGCGACCTGGAC----------------TCATCGGACGGTGTCGCTTATCCTCGTTCGGTTCCGTTCCCACCATCCGCTGACTACACCAGTGGACGTCCA------GGCGCAACATCTGGTACGTT-TGAACA
i caeJap4.Scaffold17934    C 0 I 7
s caeAng1.scafRNAPATHr2947     9401 270 +    15238 AGTGTTTTGGGAGGCGGAGCTGCAGCTCAACGC---GGTGCCTACGACCCGTCAAACGTTGGC---GGTGGTGCGGCAAGTGGCGCCGGAATCACAGGAGGACCGGGCGGATCTAATTTCGGTCGAGAAATCGAAATAGGTCGCGGTGACGCAACCGACGGCGATAACAACGCCGCCGG-TGATGTCGCTTATCCTCGTTCCGTACCCTTCCCACCATCCGTTGACTATACTGGCAGTGGCGCAAGACAGGGTTCACAAActggtaagtttttttct
i caeAng1.scafRNAPATHr2947 I 405 C 0

a score=240056.000000
s ce10.chrX                 4989855 304 + 17718866 AAAATTTTCTGTCTTCA-----CATATGATTTTTCAGCAGGCGGACGTGTGATCAATAATCTTGATGGAACCACAACAGTTAATATGAATGGAGGGTTCGACATTGCCAACCTTGAAGGAACTCTTCAATCGTTGCTCAACAAGATTGAGAAGCTTGAGATGGAGCGCAATGAGCTTCGAGATACCTTGGCCAGAATGAAAAAGAAGACCACTGAGACTCACACCACCATCAATCAGAAGGAAACTCGTTACAGAAACATTGAAGATAACCTTCAAGATGCTGAAGAAGGTAAACATATAACTCATTAA
s cb4.chrX                 10327545 303 + 21540570 AATCGATGCTAAttata-----aaaactgtttttcagCCGGTGGACGTGTGATCAACAACATCGATGGAACCACTACTGTCAACATGAACGGTGGATTCGACATTGCTAACCTTGAAGGAACTCTCCAATCGTTGCTCAACAAGATTGAGAAGCTAGAAATGGAACGCAACGAGCTCCGTGACACTTTGGCtagaatgaagaagaagactacCGAGACTCATACCACCATCAACCAGAAGGAGACTCGCTACAGAAACATTGAGGATAACCTCCAAGATGCTGAGGAAGGTATGAATCTAAA-CAATTA
i cb4.chrX                 I 1 I 1
s caeRem4.Crem_Contig0      1852597 301 -  4500979 Ggtgattgaaaaattta-----attattttatttcagccgGTGGACGTGTGATCAATAATCTCGATGGAACCACCACAGTCAACTTGAATGGTGGATTCGACATTGCAAACCTTGAAGGAACTCTTCAATCACTACTCAACAAGATCGAGAAACTCGAGATGGAACGCAATGAGCTCCGTGACACTTTGGctagaatgaagaagaagaccacTGAAACTCATACTACCATCAACCAGAAGGAAACTCGCTACAGAAATATCGAGGATAATCTCCAAGACACTGAGGAAGGTGAGTAGCTGA---AATGA
i caeRem4.Crem_Contig0     I 1 I 1
s caePb3.Scfld02_0          3238219 300 +  4147112 -AGGATTAGGTGTTTTA-----GTGAGTTTATTTCAGCCGGAGGACGTGTGATCAACAATCTTGACGGTACCACCACTGTCAACTTGAACGGAGGATTCGACATTGCTAACCTTGAGGGAACTCTTCAATCTTTGCTAAACAAGATTGAGAAACTTGAAATGGAACGCAATGAGCTCCGTGACACTTTGGctagaatgaagaagaagactacCGAGACTCACACTACCATCAACCAGAAGGAAACTCGTTACAGAAACATTGAGGATAACCTTCAAGATGCTGAAGAAGGTA---ATATAAGTTAGTCA
i caePb3.Scfld02_0         I 2 C 0
s caeJap4.Scaffold17934      400585 289 +   591668 AAAAGTTACATTATTcacaattcattttttttttcagctggCGGACGTGTGATCAACAACCTAGATGGAACCACCACAGTCAACATGAACGGAGGATTCGACATTACAAATCTCGAGAGCACTCTTCAGTCGCTACTCAACAAAATTGAGAAGCTTGAGATGGAGCGCAATGAGCTTCGTGACACTCTTGCTAGAATGAAGAAGAAAACTACTGAGACCCATACCACAATCAACCAGAAGGAGACTCGCTACCGAAACATCGAGGACAATCTTCAAGACGCCGAGGAGG--------------------
i caeJap4.Scaffold17934    I 7 C 0
s caeAng1.scafRNAPATHr2947     9671 292 +    15238 -acagGTTGTTGgtttagaaa-ataatttgattccAGCCGGTGGCCGTGTGATCAATAACATCGATGGAACAACAACCGTCAACATCAACGACAAATTCGATGTTACACACTTGGAAGGCACACTTCAATCACTTCTCAATAAGATCGAGAGATTGGAAGTTGAACGAAATGAGCTTCGTGAAACTTTGCTCcgtttgaagaagaagacaacCGAAACAACCACTACAAACACCCAAAAAGAAACGAGATATCGCAACATTGAAGACAATTTGCAAGATGCTGAGGAGGATAAG---------------
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caeSp111.Scaffold409       181316 1400 -   201088 I

a score=1556236.000000
s ce10.chrX                 4990159 1354 + 17718866  
s cb4.chrX                 10327849 1359 + 21540570  
i cb4.chrX                 I 1 C 0
s caeRem4.Crem_Contig0      1852899 1362 -  4500979  
i caeRem4.Crem_Contig0     I 1 C 0
s caeSp111.Scaffold409       182716 1348 -   201088  
i caeSp111.Scaffold409     I 1400 C 0
s caePb3.Scfld02_0          3238519 1354 +  4147112  
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      400874 1289 +   591668  
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947     9963 1423 +    15238  
i caeAng1.scafRNAPATHr2947 C 0 I 118

a score=181186.000000
s ce10.chrX                 4991513 120 + 17718866 TTTCAGATCGAGAAAGTCATCGAAAACCGTGAGCGTACCCATCGTAATCGCATCAAGCAGCTTGAAGATCAAATCGCAATTCTCCGTGATCAACTTGATGGAGAGCGTCGCCGCAGACGG
s cb4.chrX                 10329208 120 + 21540570 TTACAGATCGAAAAAGTCATTGAGAACCGTGAGCGTACTCATCGCAATCGCATCAAGCAACTCGAAGACCAGATTGCTATTCTCCGTGACCAACTCGATGGTGAACGCCGTCGTAGACGT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1854261 120 -  4500979 tttcagatcgagaAAGTCATCGAGAATCGTGAGCGCACTCATCGCAATCGCATCAAGCAGCTCGAAGATCAAATTAATATTCTCCGTGACCAACTCGATGGCGAACGTCGTCGCAGACGT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184064 120 -   201088 TTTTAGATTGAGAAGGTTATTGAGAACCGTGAGCGTACTCATCGCAACCGCATCAAGCAACTCGAAGACCAGATCGCCATTCTCCGCGATCAACTTGACGGAGAACGCCGTCGTAGACGT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3239873 120 +  4147112 ttacagattgaGAAGGTTATTGAGAACCGTGAGCGCACTCATCGCAATCGCATCAAGCAACTTGAAGACCAAATTGCTATTCTTCGTGACCAACTTGATGGAGAGCGTCGCCGTAGACGT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402163 120 +   591668 TTTTAGATTGAGAAAGTGATTGAGAACCGTGAGCGCACTCATCGCAATCGCATCAAGCAACTCGAGGATCAGATTGTCATCCTCCGCGACCAACTGGACGGAGAGCGTCGCCGCAGGCGT
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    11504 120 +    15238 tcgcaaatcgaaaaagtcaTCGAGAATCGCGAGCGCACTCATCGCAATCGCATCAAGCAACTTGAAGATCAAATCGCAATTTTGCGCGATCAACTCGACGGTGAACGCAGGCGCAGAAGG
i caeAng1.scafRNAPATHr2947 I 118 I 550

a score=182150.000000
s ce10.chrX                 4991633 132 + 17718866 GAGTATGTTGATCGTTCCATGGTTAATGATATTGGACGTCTCGGCTCAAATGTTCTTGGAATTCGT---AACAGCTATGGAGATAACAGCATTGATGCCATTATCAATGGTGGAAGCCGTTCAGTAGGGTAAGTA
s cb4.chrX                 10329328 132 + 21540570 GAATATGTTGATCGCTCTATGGTCAACGATATCGGACGTCTTGGATCCAATGTTCTTGGAATTCGC---AATAGCTATGGAGACAACAACATTGATGCCATCATCAATGGAGGAAGCCGGTCCGTTGGGTGAGTG
i cb4.chrX                 C 0 I 3
s caeRem4.Crem_Contig0      1854381 132 -  4500979 GAGTATGTTGATCGCTCCATGGTCAATGACATTGGACGTCTTGGTTCCAATGTTCTTGGTATCCGT---AGCAGCTATGGTGACAACAACATCGATGCAATCATTCACGGTGGAAGCCGTTCTGTTGGGTAAGTT
i caeRem4.Crem_Contig0     C 0 I 1
s caeSp111.Scaffold409       184184 132 -   201088 GAATATGTTGATCGTTCGATGGTCAATGACATCGGACGTCTTGGATCCAATGTTCTTGGAATCCGT---AACAGCTATGGAGACAACAACATCGATGCAATCATTCATGGAGGAAGCCGTTCTGTTGGGTATGTA
i caeSp111.Scaffold409     C 0 I 10
s caePb3.Scfld02_0          3239993 132 +  4147112 GAATACGTTGATCGCTCCATGGTCAATGATATCGGACGTCTTGGATCCAATGTTCTTGGAATCCGT---AACAGCTATGGAGACAACAACATTGATGCTATCATTCATGGTGGAAGCCGTTCTGTTGGGTAAGCA
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402283 132 +   591668 GAGTACGTCGACCGTTCTATGGTGAACGACATTGGACGCCTTGGATCCAATGTGCTGGGAATTCGT---AGCAGCTATGTTGACAATAACATCGACAACATTATTCACGGCGGTAGCCGTTCCGTTGGGTAAGCA
i caeJap4.Scaffold17934    C 0 I 3
s caeAng1.scafRNAPATHr2947    12174 135 +    15238 gaaTATGTTGATCGTTCAATGGTCCAAGATATTGGCCGACTTGGCTCAAATGTTCTTGGTATCAGCAGAAGCAGCTATGGTGACAACAATATTGAGAATATTCTACATGGTGGAAGTCGATCTGTTGGGTGAGTA
i caeAng1.scafRNAPATHr2947 I 550 C 0

a score=-12374.000000
s ce10.chrX                 4991765 27 + 17718866 TAGATTTGTAGGGTAAGTATAGATGTA-------
s cb4.chrX                 10329463 24 + 21540570 TAGATTTTGGA---TAATGTGtttttt-------
i cb4.chrX                 I 3 C 0
s caeRem4.Crem_Contig0      1854514 22 -  4500979 -AGATTCCTT----TAATTtagttgtt-------
i caeRem4.Crem_Contig0     I 1 C 0
s caePb3.Scfld02_0          3240125 17 +  4147112 -------TTGA---CAGTGGAGTTTCT-------
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402418 22 +   591668 TCTACTAATGG---TGATAGCGATT---------
i caeJap4.Scaffold17934    I 3 C 0
s caeAng1.scafRNAPATHr2947    12309 21 +    15238 -------------CTAACCTAGCTATCCTGAtta
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caeSp111.Scaffold409       184316 10 -   201088 I

a score=360710.000000
s ce10.chrX                 4991792 394 + 17718866 TGTGTAAGGTGAAATTTGATTTTTAACAGTT--TCG-GGAGTTT---TTTCATAGAGCAGTT-----------------TATTCCAGATTTTATCCACGTTCGACGTTTGCTTCAAATCCATTGACTCCTCCACTCGGAAGTTCTACACCAACTCATCGTCCACACGTGACCGATTTCAGAAGCGCCGTTGACGCTGGCAGCAGCTATCGCCGTCCA---ATCTCGACGA---------TTGAAGATTCGGGTATGGAAGTTACATTCAATACATATCCACC---AGAAGTTTCT---AAACTACAACAAAATACTCCCGTAATCCGGGTTCATAGAAGTAAGAGCCGTGAGGTGATGCATCAGGA---GGTCCACGAAACTAGAGAGATGCATCAC---------AGAGAAGAGATCCAAGATGGTGGAAAACGT---ATTCACATT---CC
s cb4.chrX                 10329487 413 + 21540570 ----tGTCTTGCAT--TAAATTCTAACATTTCATTA-TGACTTT---TAAAACCtagaaaatagaatttcagaaaatagaatttcagattctatcCACGCTCGACATTCGCTTCGAACCCATTGACTCCACCATTTGGAACATCCACACCAACTCACCGTCCACACATCACCGACTTCAGAAGCGCCGTTGATGCCGGAAGCAGCTATCGCCGTCCA---ATCTCGACAA---------TTGAGGATTCCGGTATGGAAGTGACATTCAACACTTATCCACCACAAGAAGTTTCTTTCTCACATCAACAAAACACACCGGTTATTCGTGTACATAGAAGTAAAAGCCGTGAGGTGATGCATCAAGA---GGTGTTTGAAACTCGTGAGATGCATCACCGT------------GAGACCAGAGAAGAGGGTCAACAA---ATTCATATTCCATC
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1854536 387 -  4500979 ----tttctt--------atttctaacATTTTGTAAGTGATTTC---TCAACTAGAGCAGCT------------------ATTTCAGATTCTATCCACGTTCGACTTTCGCATCGAACCCATTGACTCCACCACTTGGAACATCCACTCCAACCCATCGCCCACACATCACCGACTTCAGAAGTGCAGTTGATGCCGGAAGCAGCTATCGCCGTCCA---ATCTCCACAA---------TAGAGGATTCCGGTATGGAAGTGACATTCAATACTTATCCACC---AGAAGTTTCT---AAACACCAACAAAATACACCGGTTATCCGTGTGCATAGAAGTAAAAGCCGTGAGGTGTTGCATCAGGA---GGTCATCGAAACCAGAGAGATGCATCATCAC------AGAGAAGAGAACAGGAGTGATAGTCAACAG---ATCCATATT---TC
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184326 405 -   201088 CGTTTGTTGTGATTTCTCATTCATAACATTTTTTCG-GGATTTC--TTTAACTAGATAGCTC------------------ATTTTAGATTCTACCCACGTTCGACATTCGCTTCGAACCCATTGACACCACCACTTGGAACATCGACTCCAACTCATCGTCCACACATCACCGACTTCAGAAGTGCCGTCGACGCCGGAAGCAGCTATCGCCGCCCA---ATCTCGACAA---------TTGAGGATTCCGGTATGGAAGTGACATTCAATACTTATCCTCC---AGAAGTTTCT---AAACCACAACAAACTACACCGGTTATCCGTGTGCATAGAAGTAAAAGCCGTGAGGTGATGCATCAGGA---GGTCATCGAAACTagagagatgcatcacagagaaagcagagaagagagcagagaTGACAGTCAACGC---ATTCAAATT---TC
i caeSp111.Scaffold409     I 10 C 0
s caePb3.Scfld02_0          3240142 401 +  4147112 ----TGTTGTGGTT--TCAGTCATCTAACATTTTCC-GGAATTCAATTCAACTAGACCAAAT------------------GTTTTAGATTCTATCCACGTTCAACCTTCGCTTCCAATCCATTGACTCCACCACTTGGAACATCAACTCCAACTCATCGTCCACACATCACCGACTTCAGAAGCGCCGTTGATGCAGGAAGCAGCTATCGTCGTCCA---ATCTCAACAA---------TTGAGGATTCCGGTATGGAAGTTACATTCAATACTTATCCACC---AGAAGTTTCT---AAACATCAACAAAATACCCCGGTTATCCGAGTTCATAGAAGTAAAAGCCGTGAGGTGTTGCATCAGGA---GGTCTACGAATCTAGAGAAATGCATCACAGAGAAAGCAGAGAAGAGAGCCGGAATGAGGGTCAACAA---ATCCACATT---CA
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402440 373 +   591668 ----------GATC--TCATTTCTAACattttgttc-ccatttt---t-------aaTAATA------------------CGTTCAGATTCTACCCGCGCTCAACGTTTGCATCCAACCCGTTGACCCCACCACTTGGAACCTCGACCCCAACTCACCGCCCAATCCACACTGACTTCAGAAGCGCTGTCGATGCCGGCAGCAGCTATCGTCGCCCA---ATTTCGACTA---------TTGAGGATACCGGTATGGAAGTCACATTCAATACTTACCCACC---AGCAGTGCCA---AAACACACACAAAATACACCGGTTATCCGAGTGCATAGAAGTAAAAGCAGAGAAGTTTTGCATCACGA---GTATATCGAAACTAGAGAGATGCATGAA---------AGGGAAGAGAGCAAAGAAG---GTCAACAA---ATTCATATC---CC
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    12330 394 +    15238 ------------------actggaaaaaata--atg-tgacttt---gaacattcaaaaatt--------------------tccagcttctACCCTCGCTCCACATTCGCCTCCAACCCGTTGACGCCACCATTGGGCACCTCAACACCCACCCATCGCCCACACATTTCCGATTTCCGAAGTGCCGTCGACGCTGGCAGCAGTTATCGACGACCAGTCgtctcaacaacaacaaatctCGATGATACCGGTATGGACGTTACCATCAAAACATATCCCCC---GTCAATTACT---AGAATTAATCAACAAATGCCAGTGATTCGTGTGCATCGTAGTAAGAGCCGCGAGGTTTTACATAGAGAATCAGAGACAGAAACTACAATAACTCATGACCAA------ACTTTTGATAGTCAAGAAGGCGATTCAAAAACTATCCATGTC---CC
i caeAng1.scafRNAPATHr2947 C 0 I 37

a score=-1815.000000
s ce10.chrX                 4992186 64 + 17718866 CAGTGCAGAGAAC------CAATAGAAATTTTTAAGCAT--------ATGTTTTTTGAG----------CACAACTTCTTCC--TTTTGT
s cb4.chrX                 10329900 62 + 21540570 GAGTGCAGAAAAC------Caata---aattctagaaat--------ttacACTTTCA-----------CAAAACGTCTACCCTCTGTGT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1854923 57 -  4500979 GAGTGCTGAGAAC------cattag--aattttgaaatt--------ttccacttT---------------AAACGTCTACC--CTATGT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184731 52 -   201088 GAGTGccgaga---------aatg---attttt--------------ttgaacctttTA----------CTGAACGTCAACC--CTATGT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3240543 71 +  4147112 GAGTGCAGAGA---------Aatg---atttctagaatttcc-----tTAGACTTTTCCTAGAATTTCTTTAAACGTCTACC--CTATGT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402813 73 +   591668 GGCGGCAGATCACTAAACTTAAcc---aattttgaaaactttctaAATTCGATTTTAAT------------TTGCTTCTAAC--TAACAT
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947    12724 37 +    15238 I

a score=9992.000000
s ce10.chrX                 4992250  95 + 17718866 -GA-------ACGTC-------C--TTTCGAAACCAAACCATTTTGTTTTTTTTTCTTTTC--TCCAAATGTTACTGACCTTGAGTGA--------------TTAACT------------TCAGAGCTC------------GA---TACTTCTCA
s cb4.chrX                 10329962 102 + 21540570 -GA-------ACGTC-------CATTTTTGAATCCAatt-------tgtctttcttttttc--ac------tcaC---ACTCGCGTGA--------------TTAACC---GAAAacttctcgactttttttttcgttaaagA---AACTTCTCA
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1854980  91 -  4500979 -GA-------ACGtc-------c--ttttgaaacatttt-------ttcctttttgccTTC--TC------TTACTGACCTTGCGTTA--------------TTAAcc---aaaaacttctcaaaaccT------------GA---CATCTGTCG
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184783  86 -   201088 -GA-------ACGTC-------C--TTTTGAATCCAAAT---------CCTTTTGCCTTTC----------TTACTGACCTTGCGTGA--------------TTAACC----AAAACttctcgaaattc------------aa---aacttctca
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3240614  91 +  4147112 -GA-------acgtc------tt--ttttgaaacaactt---------cCTTATGGCTTTCATTT------TTACTGACCATGCGTTA--------------TTAacc----aaaacttctcaaaacta------------ga---aacttctcg
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402886 109 +   591668 -AATTAATTCACGTCAATtcttt--tttggagacaaaat-------tCACCCCAATTATAC--AC------TTCTAAACCCTGTGTGT--------------TTAACC--CACAAACTTCTCAAAAATT------------GAActaattcttta
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    12761 101 +    15238 gaa-------actTC-------T--CACTTATCCAAGAA----------CCTTTGTCTGTC----------TAAC---CTTTGTCTaaNNNNNNNNNNaCATCTAACCTCTaattaatttcgaaaatca------------aa---tacTTCTCA
i caeAng1.scafRNAPATHr2947 I 37 C 0

a score=27306.000000
s ce10.chrX                 4992345 117 + 17718866 AAA-----TTTTAAC---A--TGGAGAAGTGAGACGG-AC----TGAATAATTATAAAAATTTTCTCGTAGCACGAGAAACTAGTGTGTACT-----T-C--TTCTTTCCTCGATGTTTTGTTAGTATCCTGATACAC----TA
s cb4.chrX                 10330064 123 + 21540570 GAA---TCCATTAAC---ATTTGGAAAATAGAGACGGAGCATGATGAAT------AATTCATTTCTCGTAGCACGAGAAACTAGTGTGTACACATTTT-T--CCACTCCcta-atgtt-----tttttcctgatACACCGATTT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855071 118 -  4500979 GAA---ATTCTTAACAAAAGTTCAAGAATTGAGACGG-GCATG-TGAAT--------TCGATTTCTCGTAGCACGAGAAACTAGTGTGTACA-----T-T--CTTTTCCCTT-ATGTT-CATCCTCACTCTGATACACC---TT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184869 110 -   201088 GAA---ATCTttaac---aaaaagagaattgagaCGG-TCAT--CTTCT--------AATATTTCTCGTAGCTCGAGAAAGTAGTGTGTACA-----T----TTCTTCCCTC-ATGTT-TATC----CACTGATACACTG--TT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3240705 120 +  4147112 aaataTCTTTTtaac---aaaaagagaattgagaCGG-TCAT--CTGAT--------TAAAATTCTCGTAGCTCGAGAAACTAGTGTGTACA-----T-TTCTTCTTCCCTC-ATGTT-TATCCTCACACTGATACACTG--TT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      402995  87 +   591668 aaa---------------aaagggAGAAGATTGAcgg-tttt--cgaat------------tttctcgcaCCACGAGAAACTAGTGTACCTT-----TGT--TTGGTTTCTA-ATGGT----------------ACACT---GA
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947    12862   0 +    15238 C

a score=299423.000000
s ce10.chrX                 4992462 400 + 17718866 CTTAGTGTACAGTTCTCAGTACCAAAAA-CTTCCCTT---TTCATGTCCGTCTCACTTTTCCTAGTGCAA-----TTACAGCAA----CAATAAAT-CAACCCTAGTGTG-----------------CTTGGGAGACCAGTC-----------TTAAAATAATC-CCTTTTCTAGGATCGGTGTACGGAGGCTCGATTAGAGATCGCGACTCGGTCTACGGT---GGCGGTGGGCGTGATTCGTCGTTCGGCACTCGTGCCGGCGATTCCATCTCTCGTGCGGGTGTCGAGCCACGAGATCCATCGCTCGTCGAAATTCCATCCAAC---GAGCCGCCAATGACAACGTCCACCCATTCTCAAGGAGGATCTCGCTATGATACCCTGGCACCTAACCGCGACGA----------------------CTTGTAGATACCACTCACCACA-GAC--------------------TGCTTGAC-----CAACTCGACT-------AT
s cb4.chrX                 10330187 400 + 21540570 CTTAGTGTACAG----ATGTACAGTAATTCTTATCCGTTTTTCATGTCCGTCTCTATTTTC--------------Ctacaaaaa----aacacaataCGACCCTAATGTGCCGATATACCCCTATGTCTCCTGAAACCAATC-----------------AAAAC-CCTTTTCTAGGATCGGTGTACGGCGGCTCGATTAGAGATCGCGACTCGGTCTACGGTGGCGGCGGCGGACGCGACTCGTCGTTCGGTCAACGTGCCGGAGACTCGATCTCTCGCACTGGCGTCGAACCACGTGATCCGTCCATCGTAGAGATTCCATCCAAC---GAACCGATAATGACGTCGTCCACCCATTCTCAAGGAGGATCTCGCTATGACACTTTGGCACCTAACCGCGACGA----------------------CTTGTAGA-----CGCAAAAAACCAC--------------------CGCTTGAC-----CA--TCAAAT-------AA
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855189 399 -  4500979 CTTAGTGTACAGTTCAAAGTACAGAAACTCTTACCCA---ATCATGTCCGTCTCATTTCTT----CCAAA-----CTACAGCAATATCAAAAGAATTCAATCCTAGTGTG-----------------CTTGGGAAACCAGTC-----------TTAAATCAAAC-CCTTTTCTAGGATCGGTGTACGGCGGCTCGATTAGAGACCGCGATTCGGTCTACGGT---GGTGGCGGACGTGATTCGTCGTTTGGCACACGTGCCGGAGATTCCATCTCTCGTACTGGCGTTGAGCCACGTGATCCGTCTATCGTAGAAATTCCATCGAAC---GAGCC---AATGACTACGTCCACCCATTCTCAAGGAGGATCTCGCTATGATACCCTGGCACCTAACCGCGACGA----------------------CTTGTAGACTATTCGCACCGCA-CAC--------------------TGCTTGAC-----CAATTCAACT-------TT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       184979 388 -   201088 TTTAGTGTACAGCACACAGTACCGAAACCTTATGCTT---ATGATGtccgtcttttttctcgtc-cAAAACTTCTCAACAGCAA----TACCATATCCAACCATAGTGTG-----------------CTTGTAAAACC------------------AATCAAAC-CCTTTTCTAGGATCGGTGTACGGCGGCTCGATTAGAGATCGCGACTCAGTCTACGGT------GGCGGACGGGACTCGTCGTTTGGCACTCGTGCCGGAGACTCGGTCTCTCGCACTGGGGTCGAGCCACGAGATCCGTCTATCGTAGAAATTCCATCCAAC---GAGCC---AATGACAACGTCCACCCATTCTCAAGGAGGATCTCGCTATGATACTTTGGCACCTAACCGCGACGA----------------------CCTGTAGA-----CACTTCGCA-CAT--------------------CGCTTCAC-----CAACTCGTTC-------AT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3240825 393 +  4147112 CTTAGTGTACAGATCACAGTACCAAAACTGTTTGTTC---ATGATATCCGTCTCTCTTCTCCTC-TCAAA------------AA----TCCAGAGTTCAGACCTAATGTG-----------------CTTGTGAACCTTGTC-----------TAAAATCAAAC-CCTTTTCTAGGATCGGTGTACGGCGGCTCGATTAGAGATCGCGACTCAGTCTACGGT------GGCGGACGTGATTCGTCGTTTGGCACTCGTGCCGGAGACTCTGTCTCTCGCGCTGGCGTTGAGCCACGAGATCCGTCTATCGTAGAAATTCCATCCAAC---GAGCC---AATGACAACGTCCACCCATTCTCAAGGAGGATCTCGCTATGATACCTTGGCACCTAACCGCGACGA----------------------CCTGTAGACAATTCACTCCGCA-CAT--------------------CGCTTCACCAAAACAACTCAACA-------AT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      403082 413 +   591668 TCTGGTGTACATGT--CGGTCCAAAA---CTTCCCAA---ATGTTGtccgtcttttttctcctc-tccaa------------------aaaaaaat----tcctagtGTG-----------------CTTTGGGACACTGTCTGCCcgttcgtttttataaatCTTCTTTTCTAGGATCGGTGTACGGCGGCTCGATTAGAGAACGCGACTCCGTCTATGGT------GGCGGACGTGACTCGTCGTTTGGCACTCGTGCCGGTGACTCTGTCTCCCGTTCGGG---TGAGCCGAGAGATCCGTCTATTGTAGAGATTCCAACAAAT---GAGCC---AATGACAACGTCCACCCATTCTCAAGGAGGATCTCGCTATGATACCCTAGCTCCTAACCGCGACGA----------------------CTTGTAGACATCCCCctataca-cacacacacacatacgcACCGCTTGCTTGAC-----AAACTTGGCTTATTTTATT
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    12862 324 +    15238 -------------------------------------------------------CTTATC----CAAGA-----------------------------ACCTTTGTCTG-------------------TCTAACCTTTGTC-----------------TAAAA---TTTTGTAGGATCAGTATATGGCGGCTCAATT------CGTGATTCAATTTATGGCGGTGGAAATGGTCGTGACTCATCATTTGG---TCGCGCTGGTGATAACATTTCACGAGCTAG---CGAACCTCGTGACCCATCTCTTGTTGAAATTCCATCGAACTCTGATCC---AATGCAAACATCACAAACTTCGCAAGGTGGATCACGTTACGATGTTCTTGCGCCTAACCGCGATGATCNNNNNNNNNNCGACCCGTCTCTTGTCGA-----AATTCCATC-GAA--------------------TTCTGATC-----CAATGCAAAC-------AT
i caeAng1.scafRNAPATHr2947 C 0 I 55

a score=27171.000000
s ce10.chrX                 4992862 57 + 17718866 ACGCTT-----CTGCCTAA-C---AAGCAACTTCACATAACCCCATTGCTTTTTCCAAATGCTTTT
s cb4.chrX                 10330587 62 + 21540570 ACGCTTGATCGCCATCTAA-CCAAGAGCAACTTCACACAT-TTAAC--CCCCTTCGAAACGCTTTT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855588 53 -  4500979 ACGCTT-----CCGCTTAA-C---AAGCAACTTCACATAA-CCTATTGCTTCTTCAAATCgct---
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185367 55 -   201088 TCGCTT-----CCGCTTAACC---AAGCAACTTCACATAA-CCCATTGCTTATTCCTTTtgctt--
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241218 54 +  4147112 ACGCTT-----CCGCCTAA-C---AAGCAACTTCACATAA-CCCATCGctttttcctatcgctt--
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      403495 49 +   591668 CCGCTT-----TTGGCTAA-C---AAGCAATTTCACAAAA-CTCATTA-----GCCTATCGCTt--
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947    13186 55 +    15238 I

a score=-23546.000000
s ce10.chrX                 4992919 77 + 17718866 ----------TCTTT-TATCGCTTATAATTCCGTTTCC--T------TCTGTCCTCGTTTCAAT--TCAATTATTTG-------AATATTCCT---ATATTC--TCAGTC-
s cb4.chrX                 10330649 88 + 21540570 ----------CTTAT-TGCTTCCATTGCTTCATTTCCT--TCTCGAATTCGTCTCCGT-----T--TCCATTGTTCATTAAAACACAattccccgatttttt--cctttt-
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855641 62 -  4500979 ------------------------ttgtcttttttcct--t------ttcgtCTTCGT-----T--CCCATTCTTTG-------ATTGTTCCTCGCACAATt--cgaaat-
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185422 63 -   201088 ------------------------ctctttttgcttcttct------tccgtcTTCGT-----T--ACAATTACTCG-------ATTGTTC-ACAAACAACT--TCACTA-
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241272 64 +  4147112 ------------------------ttctcttttttcct--t------ttcgtctttGT-----T--CTCATTATTAA-------ATTGTTCTTCACACAATTCATTCTTA-
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      403544 49 +   591668 ----------------------------------tctt--t------tccgttttctttta--T--CCAACTCCCAT-------GTTCTTCTTCGCCCAATG---------
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    13241 91 +    15238 TCTTTAAACGCTTATATGTAGCTTCTTCCATGTTTCTT--T----AATATGTCCTATT-----TAacccatgttttt-------tttgcttcttgctatatt--ttttgct
i caeAng1.scafRNAPATHr2947 I 55 I 89

a score=1476.000000
s ce10.chrX                 4992996 73 + 17718866 CCTT-AAAAAAAGTCCAATAATAACTACAC---CGCC-CTCTCCAGTTTTCCCCGATTTTCATGTGCACCAGACGCCC
s cb4.chrX                 10330737 69 + 21540570 tcacgAACAAAAGTTC--CAATAATTTCCCCTGTCTc-tgtctcttcttt------ttctcatttccacgTGACTCCA
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855703 58 -  4500979 tcat-----aaaattt--tgattatttccC---TTTC-CGCCtc--cgtt------ttctcattttcacgtCAC-AAA
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185485 59 -   201088 TTAT-----AAAGTCC--AGATAATTAC-----TTCA-CACCCCCGTTTT------CTCTCATGTGCACGTGACGTCC
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241336 53 +  4147112 TTAT-----AAAGTCC-AAGATAATTAC-----TTCAGCACC--------------TTCTCATGTGCACGTGACGTCC
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      403593 53 +   591668 ---------AAAATGT----ATTCATGT-----ATGT-AACCCCCCAGTT------TCCTCATGTGCACGTGACGTCC
i caeJap4.Scaffold17934    C 0 C 0
e caeAng1.scafRNAPATHr2947    13332 89 +    15238 I

a score=185888.000000
s ce10.chrX                 4993069 342 + 17718866 TTTCTTCCA--TTACTTTTCTCAACTTTCTATCGTTCCGACTACTGCCCTT---CGCAAACTTTGACAATAA------------GTCTCATCTATAAT----GTATTGTAACTC-AA--TAGTTAGCAA----------CCG-TGATGTAATAAAGTCTGTAATTACCC--------GAGTCCAAGCTGCAAGAA---------------------A------AAAGTCCAGAA--CAACAC---ACTTCACATAGAACA--------TGAAAACATTAAACTGACCTGATTTGGTGGCAGGCAACTACGTCCAAAGCAGCACGGAAGGAATACACGATGAATCCATTTCAACCATTTGGGGTTTAGTGAACCGTATGGCTCCTCGTTTTTTGGCTTGAAAACGGCAATGATTTCCT-GGAAGT-----AT
s cb4.chrX                 10330806 392 + 21540570 CTTCTCTAC--TTTC---------TTTTCTATCGTTT-GACTACTGCCCG----ATC-CG-TTTGACACTAAGTCAAAcgctgaattttttctttaattgtAAAATTGCCACCCATAT-TAGTTAGCAACAACCCACTCCAT-GGATGTAATAAAGTATGTATTTACCCCGGCAAAAAAgttcaagctgaaaattctaaaagagTCCA-----ATTAGAGATTAGAGTCCAGGAGGCAacag---acaaaaaatggaaaa----------aaagcaaaCTACTCACTTGGTTTGGTGGCAGACAGCTACGCCCAAAGCAGCACGGCAGGAATACACGGTGAATccatttcagccattttggaTTCAACGATCCGTATGGCTCCTCGTTTTTCGGTTTGAAGACTGCGatgatttcct-ggaaaaaaagtaT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1855761 352 -  4500979 CTTTTGTAC--Ccccttcta---tttttctatcgTTT-GACTACTGCCCC----AGCACG-TTTGACACTAAGTCAAACCC---ATTCTTTTTCATGT----AAATCGCCACTC-TA--TAGTTAGCAA----------TCT-TGATGTAATAAAGTTTGTATTTACCC--------AAGTCCAAGTTGAAAATT-----AGAGTCCA-----ATTA-AGTGAAAAGTCCAGGA--CAACAC---AAAAGTAACCGA-----------------TACATCACTAACCTGGTTGGGTGGAAGACAACTGCGTCCAAAACAGCACGGGAGGAATACACGATGAATCCATTTGAGCCATTTCGGGTTGAGAGATCCATACGGCTCCtcgttttttggtttgaagACGGCGATGATTTCCT-GAAAAG-----AT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185544 360 -   201088 TTTCCGCCC--CTCtctcta-cttttttctatcgttCAGACAACTGCCCCTCCCCGCACA-TTTGACACTAAGTCAAGaa----atttctttcctttttgt-aAATTGCCACTT-TA--TACTTAGTAA--------TCACTCTGATGTAATAAAGTTTGTATTTACCC-----AAGAGTCCAAAACTGAAAGGG-----GGAGTCCA-----ATTA------AGTG--CAAGA--CGTTacgataaaaagaaaaga----------------------aactgacCTGATTGGGTGGAAGACAACTGCGACCGAAACAGCACGGAAGGAATACGCGATGAATCCATTTCAGCCATTTCGGGTTGAGTGATCCATACGGCTCCTCGTTTTTCGGTTTGAAGACGGCGATGATTTCCTGGAGAAA----TAT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241389 361 +  4147112 TTTCCGCCCTTCCcccttta-cttttttctatcgtTT-GACAACTGCCCCT---CGCACA-CTTGACGTTAAGTCAAAAT----TCCCCTTTCTTGATTGTAAAATTGCCACTC-TA--TAGTTAGCAA--------TCTCT-TGATGTAATAAAGTTTGTATCCACCC-----CAAAAGTCcaagctgaaaaca-----aaagtcCAGGTTGATTA------AGAGTCCAAGA--CAACAC---AAACATATAGAA----------------------AACTGACCTGATTAGGTGGTAGACAACTGCGACCAAAGCAGCACGGAAGAAATACGCGATGAATCCATTTCAGCCATTTGGGGTTGAGAGATCCGTACGgctcctcattttttggtttgaagaCGGCgatgatttcct-gaaaaa----gat
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      403646 361 +   591668 TTTCC---C--CCCAATTTA---CGTTTCTATCTTTT-CAGTACTGCCCTT---TGCACT-ATTGACATT-TGTCA--------GCCCTTTCTTTTATT---GTATTGGCACCA-TACATAGTTAgcca----------ttt-ttctttaataAA-CCTGTATCTATCC--------GAGTTTACGCTGAAAA-------AGGGTCCA----AATTATAGG--AGAGTCCAAGG--TAGAAG---AAATGACAGACAAAACAGACATGTAGAGGTAGAAAACTGACCTGATTAGGCGGAAGGCAACTACGACCAAAGCAACATGGAAGAAACACGCGGTGCAACCATTTTAGCCATTTTGGATTCAGCGATCCGTATGGCTCCTCGTTCTTTGGCTTGAAAACTGCGATGGTTTCCT-GTAAAT-----At
i caeJap4.Scaffold17934    C 0 I 1154
s caeAng1.scafRNAPATHr2947    13421 247 +    15238 -------------------------------------------TCATTCCT---agtaaa-ttt--------------------ttccatttttttcc----acatttttacTT-CT--CATTC---------------CCC-CTATATTAT----TCTGTTTTTATGt-----------------atgaatg--------------------aata------aaatttctgtc--caaaaa---aga-------------------------------aactcaCTTGATTTGGCGGCAAACAACTTCGTCCAAAGCAGCACGGCAAAAATACACGGTGAATCCATTTGAGCCATTTGGGATTGAGCGATCCATAGGGCTCCtcgttttttggtttgaaaacCGCAAttatttcct-gaa----------
i caeAng1.scafRNAPATHr2947 I 89 C 0

a score=-1407.000000
s ce10.chrX                 4993411 19 + 17718866 TAGATTTCAA--ATATTGAAA
s cb4.chrX                 10331198 19 + 21540570 CAAGTTTCAG--AAAGAGAGA
i cb4.chrX                 C 0 I 32
s caeRem4.Crem_Contig0      1856113 14 -  4500979 CGAGTTTCAC--ATAC-----
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185904 20 -   201088 CAAGTTTCATGAATATGGAT-
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241750 19 +  4147112 CAAGTTTCAT--ATATGGAca
i caePb3.Scfld02_0         C 0 C 0
s caeAng1.scafRNAPATHr2947    13668 11 +    15238 -aaaaaacaa--aa-------
i caeAng1.scafRNAPATHr2947 C 0 C 0
e caeJap4.Scaffold17934      404007 1154 +   591668 I

a score=603.000000
s ce10.chrX                 4993430 13 + 17718866 ATGAATATTTTTT
s caeAng1.scafRNAPATHr2947    13679 13 +    15238 aaaagtgtttttt
i caeAng1.scafRNAPATHr2947 C 0 I 174
e caePb3.Scfld02_0          3241769  0 +  4147112 C
e caeJap4.Scaffold17934      404007 1154 +   591668 I
e cb4.chrX                 10331217 32 + 21540570 I
e caeSp111.Scaffold409       185924  0 -   201088 C
e caeRem4.Crem_Contig0      1856127  0 -  4500979 C

a score=-1553.000000
s ce10.chrX                 4993443 20 + 17718866 TTAAGTAAATAAGAAA--CTGA
s caeRem4.Crem_Contig0      1856127 17 -  4500979 -ATGCATAATGAGAGAGA----
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       185924  9 -   201088 -------AATGGGAAA------
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241769 15 +  4147112 -ggagaaaatgagaga------
i caePb3.Scfld02_0         C 0 C 0
e caeAng1.scafRNAPATHr2947    13692 174 +    15238 I
e caeJap4.Scaffold17934      404007 1154 +   591668 I
e cb4.chrX                 10331217 32 + 21540570 I

a score=-65054.000000
s ce10.chrX                 4993463 285 + 17718866 ------------------AATTCGACTAGAGCATCTTTTAAAAATATGTTA--------AAAGTTTTG--------TTTTTAGAGATTTATTTTGAAGGTTTACCAGGAAAATTTATGATGGCTCTAACTATT--------ATTAGCGAAAATCCA-AAAATTTTCCAACTACAA-------CAAGAAGCAGGGACAGGAAATTCATGTGGGATTTTTGTTGCTACATTTTCAGATTACAAAATTGGTAAGATAATTTCCGAGAAGTTTCATTATAAAATCCAATTTTTCAAATCAATAGGATTGTTTAG----AGCATTGAGAAAACTGCGCAACTTC---------------
s cb4.chrX                 10331249 248 + 21540570 ------------------CATTTGGTAAGAG--TCGTCt----tgatgaga---------aaattttgagagacaCATTTTGAGAAGCTATGTTG----TTTTTCAATGAG--TCATCATG--TCTAG-------------ATATGAAATTATCAA-AGAAATACGCCAgcaaaa-------caacaaaaca---------------acGTGTTTTGTGCTA-TGCCTTGTGAGTT-------TTGATCCGATGGAT-----GGAAATACGTCATAAAG-CGAGTAACTAACAAATACGGAATAGTCATGggacattttttgtgaaaaaattcaacttt---------------
i cb4.chrX                 I 32 I 19
s caeRem4.Crem_Contig0      1856144 186 -  4500979 AGTATCATGTTCTCTAGATATTCATTatgaacttctttt----ttttaggatgtcaggaaaaattttgag----atttttctagTAG--ACGTCA--------TCAGTGAG--TCATGGCG----AGA-------------ATATGAAAACAGGAGTAggaattttcgatgaaaa-------caaC---------------------ATGTTTTTCGTGTT------------------------------------------------------------------------------GGTTAGTCATG----ATTTCTTGTCGA------TGACTGT---------------
i caeRem4.Crem_Contig0     C 0 I 1
s caeSp111.Scaffold409       185933 160 -   201088 -----------------------------------------------------------AAAGTATCAAG------TTCTTGAGAAT--------------------TAAA-TTCATTATG----GAACctctctgtttcttttttggatcaTaaa-aaaaaGTGCTCAAGAACATGTTTCCAGTTcagaaa---------------acataatttttagt------------------------------------------------------------------------attacagaata----------atttttaacgGA------CGGTTACATAAGGACATAGTCA
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241784 143 +  4147112 -----------------------------------------------------------aaagtaTCGGG------TTCTTGAGAAT---------------TTCGATGAA-TTCATAATG----GAA-------------TTTtgcattcatgaa-aaaattttggaaagaaag-------agGTGTGAGA---------------ACTtaggttttgtt---------------------------------------------------------------------ttgttttcaaagtt----------attccT-TCGAA------AAGTCAt----ggaaatcaaag
i caePb3.Scfld02_0         C 0 C 0
e caeAng1.scafRNAPATHr2947    13692 174 +    15238 I
e caeJap4.Scaffold17934      404007 1154 +   591668 I

a score=-4196.000000
s ce10.chrX                 4993748 33 + 17718866 GCCTATCATCGGTAAAATAGGTCCACCATAACA
s caeRem4.Crem_Contig0      1856331 16 -  4500979 --------CTAGcaaaaaaaagcc---------
i caeRem4.Crem_Contig0     I 1 C 0
s caeSp111.Scaffold409       186093 10 -   201088 --CTTTTGTCAG---------------------
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241927 11 +  4147112 --ttttcaccAGC--------------------
i caePb3.Scfld02_0         C 0 C 0
e caeAng1.scafRNAPATHr2947    13692 174 +    15238 I
e caeJap4.Scaffold17934      404007 1154 +   591668 I
e cb4.chrX                 10331497 19 + 21540570 I

a score=-3378.000000
s ce10.chrX                 4993781 50 + 17718866 TATTTTTTAAACAAAATTTTGAATAAAAAGTTTCTAAAACACTCGAACTA
s cb4.chrX                 10331516 42 + 21540570 ---tcTTTCTTGAACTGCGAGCAGGATAACCTTTCATAACAATTG-----
i cb4.chrX                 I 19 C 0
s caeRem4.Crem_Contig0      1856347 27 -  4500979 ---------aaaaagtGGTAACAGAGAAG--------AACAACT------
i caeRem4.Crem_Contig0     C 0 C 0
e caeAng1.scafRNAPATHr2947    13692 174 +    15238 I
e caePb3.Scfld02_0          3241938  0 +  4147112 C
e caeJap4.Scaffold17934      404007 1154 +   591668 I
e caeSp111.Scaffold409       186103  0 -   201088 C

a score=50050.000000
s ce10.chrX                 4993831  90 + 17718866 TAATATATACGA------------GCAAA--ACA---AA-----------TTAACTAACGTCGTGCATGTTCTTGACGAAATAACTACCACTGGAACCCTGAGCAATTCTCTGTGGGT
s cb4.chrX                 10331558 109 + 21540570 ----ATGTTCGAGAATCTCGGTTTGAAGG--TCC---AAAGGTGAAATTGGCTACTCACATCTGCCGTATTCTTGACAAAATAGCTTCCACTGGATCCCTGAGCAATTCTCTGCGGGT
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1856374  87 -  4500979 ----ATTTTCA-----------TTAACAG--ACA---AA-----------GCAACTCACATCCTGCATATTCTTGACAAAATAGCTTCCACTGGATCCCTGTGCAATTCTCTGCGGGT
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       186103  73 -   201088 -------------------------------TCA---AA-----------AATACTCACATCTGCCATGTTCTTGACAAAATAGCTTCCACTGGATCCTTGTGCAATTCTCTGTGGGT
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3241938  83 +  4147112 ------------------------GGAAGTCTCATATAA-----------ATGACTCACATCCTGCATATTCTTGACAAAGTAGCTTCCACTGGACCCTTGTGCAATTCTCTGTGGGT
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      405161  85 +   591668 TAATATGTACAT-------------------ATG---CA-----------ACTACTAACGTCGTTcacatttttgacaaaataaCTGCCACTAGACCCTTGTGCAATTCTTTCCGGAT
i caeJap4.Scaffold17934    I 1154 C 0
e caeAng1.scafRNAPATHr2947    13692 174 +    15238 I

a score=106092.000000
s ce10.chrX                 4993921 122 + 17718866 AGTGACCATTGTGAATGGCACGACACGCTTCGTTGAACTTCAAAGAGATCGTTGCTCCGACTGTTGATCCATATGCATCGCTTCCTAAAA-TAATTGG--------CTCATTGTCAATGTACTTTTGT--------------TAA
s cb4.chrX                 10331667 132 + 21540570 AGTGTCCGTTGTGAATCGCACGGCACGCCTCGTTGAACTTCAATGAAATGGTAGCACCAACAGTCGACCCGTATGCATCGCTTCCTGGAA-TAATGACCGGG----TTGGATGCTGTTCTTGTTCTCGAGACTA--------CAA
i cb4.chrX                 C 0 C 0
s caeRem4.Crem_Contig0      1856461 133 -  4500979 AGTGACCATTGTGAATGGCACGGCACGCTTCGTTGAACTTCAATGAGATAGTAGCACCGACAGTTGATCCGTATGCATCACTTCCTGGAA-TAATGACCGGTTGTCTCGACtgctcttttgtttttcaaagct-----------A
i caeRem4.Crem_Contig0     C 0 C 0
s caeSp111.Scaffold409       186176 129 -   201088 AGTGACCGTTGTGAATAGCCCGGCACGCTTCgttgaatttcaaagagaTCGTAGCTCCGACAGTCGATCCGTATGCATCGCTTCCTGAAA-TAATGA---------ACATTTGTTCTATTGTCTTTGAATCTTG------ACTAG
i caeSp111.Scaffold409     C 0 C 0
s caePb3.Scfld02_0          3242021 136 +  4147112 AGTGACCATTGTGAATAGCACGGCACGCTTCGTTGAATTTCAAAGAGATTGTAGCTCCGACAGTCGATCCGTATGCATCACTTCCTGAAA-TAATGAC--------CCGTTTGTTCTTTTGTCTCTGCCACTGGTCAAGAAATAA
i caePb3.Scfld02_0         C 0 C 0
s caeJap4.Scaffold17934      405246 124 +   591668 AGTGTCCATTGCGGATGGCACGGCACGCTTCGTTGAACTTTAGAGAAATCGTTGCTCCGACCGTTGAGCCGTATGCATCACTTCCTGAAA-CAA------------TTTATAGCACTTTTTCATCTGCAATTTT--------TAT
i caeJap4.Scaffold17934    C 0 C 0
s caeAng1.scafRNAPATHr2947    13866 119 +    15238 AATGATTGTTGTGAATGGCGCGGCAGGCTTCATTGTATTTGAGTGAAATTGTTGCGCCGACTGTTGAACCATACGCGTCAGGACCTGGAAGtagtga---------aatttcaaagtttttttcttga-----------------
i caeAng1.scafRNAPATHr2947 I 174 N 0

a score=88361.000000
s ce10.chrX              4994043 102 + 17718866 CACACCTGTGTGCAACAATTCGTCATCAGAAGTGTATGGATCGTGATAGTCGCTTCTG---CCACCAAATTCAATTGTTGCTTCATCGGCGTGGCTTCCAAGAGG
s cb4.chrX              10331799 102 + 21540570 CAAACCTGTGTGCAAAAGGTCATCGTCAGAAGTGTACGGGTCTTGGTAGTCGCTGCAT---CCTCCAAACTCCACAGTTGCGTCGTCAGTGTTGTTTCCGAATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1856594 102 -  4500979 TATACCTGTGTGCAAGAGCTCATCGTCAGAAGTATACGGATCGTGGTAGTCGTTTCTT---CCGCCGAATTCAACGGTCGCATCGTCAGTGGTGCTTCCGAATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    186305 102 -   201088 TATACCCGTGTGCAAGAGATCATCGTCTGAAGTGTACGGATCGTGATAGTCGTTTCTT---CCACCAAATTCAACTGTCGCGTCGTCGACATTGCTTCCGAATGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3242157 102 +  4147112 CATACCTGTGTGCAAGAGCTCATCGTCAGAAGTGTATGGGTGATGGTAGTCGTGTCTT---CCGCCAAATTCAACAGTCGCGTCGTCAGTATTGCTTCCGAACgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   405370 105 +   591668 CGAACCATTGGGAAGTAAATCATCGTCCGACGTGTACGGATCGTTGTAGTCGTGTCTTCCGCCGCCAAACTCGACAATCGCGTCGTCAATATTGCTACCAAGtgg
i caeJap4.Scaffold17934 C 0 C 0

a score=3880.000000
s ce10.chrX              4994145 8 + 17718866 TCTGAAAA
s cb4.chrX              10331901 8 + 21540570 tctggaaa
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold409    186407 8 -   201088 tctaaaaa
i caeSp111.Scaffold409  C 0 I 17
s caePb3.Scfld02_0       3242259 6 +  4147112 tctgaa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   405475 8 +   591668 tctgaaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1856696 0 -  4500979 C

a score=182.000000
s ce10.chrX              4994153 2 + 17718866 AA
s caeJap4.Scaffold17934   405483 2 +   591668 aa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3242265 0 +  4147112 C
e cb4.chrX              10331909 9 + 21540570 I
e caeSp111.Scaffold409    186415 17 -   201088 I
e caeRem4.Crem_Contig0   1856696 0 -  4500979 C

a score=784.000000
s ce10.chrX              4994155 21 + 17718866 ATTTATTGACGTTTTTGTTCA
s caePb3.Scfld02_0       3242265 17 +  4147112 ----attgaatatttggTTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   405485 21 +   591668 aataatttttgttttttttta
i caeJap4.Scaffold17934 C 0 I 1316
e cb4.chrX              10331909  9 + 21540570 I
e caeSp111.Scaffold409    186415 17 -   201088 I
e caeRem4.Crem_Contig0   1856696  0 -  4500979 C

a score=-8844.000000
s ce10.chrX              4994176 725 + 17718866  
s caePb3.Scfld02_0       3242282 401 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   405506 1316 +   591668 I
e cb4.chrX              10331909   9 + 21540570 I
e caeSp111.Scaffold409    186415  17 -   201088 I
e caeRem4.Crem_Contig0   1856696   0 -  4500979 C

a score=-512.000000
s ce10.chrX              4994901 7 + 17718866 ATTTTCC-
s cb4.chrX              10331918 7 + 21540570 -attttga
i cb4.chrX              I 9 C 0
s caePb3.Scfld02_0       3242683 7 +  4147112 GGTTTCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   405506 1316 +   591668 I
e caeSp111.Scaffold409    186415 17 -   201088 I
e caeRem4.Crem_Contig0   1856696 0 -  4500979 C

a score=-28.000000
s ce10.chrX              4994908 6 + 17718866 AACAAA
s cb4.chrX              10331925 5 + 21540570 -aaaga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    186432 3 -   201088 ---aaa
i caeSp111.Scaffold409  I 17 C 0
e caePb3.Scfld02_0       3242690 0 +  4147112 C
e caeJap4.Scaffold17934   405506 1316 +   591668 I
e caeRem4.Crem_Contig0   1856696 0 -  4500979 C

a score=-3991.000000
s ce10.chrX              4994914 25 + 17718866 AATTACAATCTTCTTTAAATA----CTTA
s cb4.chrX              10331930 22 + 21540570 aaatggaaatgtc---aaaaa----ttca
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    186435 17 -   201088 aaaaactatggTC---AA---------TA
i caeSp111.Scaffold409  C 0 I 2
s caePb3.Scfld02_0       3242690 15 +  4147112 AACTGCAAAAGTT--------------CA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   406822 26 +   591668 aatttcaaatttc---aaaaagcaCTATA
i caeJap4.Scaffold17934 I 1316 C 0
e caeRem4.Crem_Contig0   1856696  0 -  4500979 C

a score=146004.000000
s ce10.chrX              4994939 201 + 17718866 CCTATGAAGTGGAGCAGTTTGCTCAGCTCTGTTCGATCTCTCATGCTTCACTTTCTTCCCA---CGGGATCCCAACAATCCAACGTTCTCATCGCAAGTTTCTACTTCTGATTCAGACGCTCCAGACGACGACATTCGAATGTTACGGCGACTTGGAGAAATGGCCGACGACTCTGCAAAGAGAATAA--------TGATAAGATTGTA-------------TAA
s cb4.chrX              10331952 213 + 21540570 cCTATGAAGTGGTGCAGTTTGTTCGGATCTTGTGGATCTCTCGTGTCTCGTCTTCTTGCCT---CTTGATCCCAACAATCCAACATTCTCATCACAAGTCTCCACCTCTGATTCGGACGCTCCGGAGGATGACATTCTGACGGTACGACGGTTTGGAGAAATGACCGAcgtatctggaaaaattgcat------AGTTATGGGACTAGA---ACGTTAGTGATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1856696 211 -  4500979 CCTGTGAAGTGGTGCAGTTTGCTCAGCTCTTACTGGTCTCTCGTATTTTGTCTTCTTCGCA---CGAGATCCGAGCAATCCGACGTTTTCATCACAAGTCTCCACCTCCGATTCCGACGCTCCAGATGATGACATTCTGACCGTGCGACGATTTGGAGAGATAGCCGAcgactctgaaaaaa-tgtga------aatcat-GAACTGGA---AAAAACATGGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    186454 219 -   201088 CCTGTGAAGTGGTGCAGTTTGTTCAGCTCTCGTTGGTCTCTCATGTTTcgtcatcttttttccacgAGATCCAAGCAATCCGACATTTTCATCACAAGTCTCCACTTCCGATTCAGACGCTCCAGAAGACGACATTCTAATGTTACGGCGATTTGGAGAGATGACCGACGACTCtgcaaaaagaataagaaattaATGAT-CGATCA-----TAAGGAATGATAA
i caeSp111.Scaffold409  I 2 C 0
s caePb3.Scfld02_0       3242707 220 +  4147112 CCTGTGAAGTGGTGCAGTTTGCTCAGCTCTCATTGGCCTCTCATGttttgtcatctttttt---cgAGATCCGAGCAATCCAACATTCTCATCACAAGTCTCCACCTCCGATTCCGACGCTCCAGACGAAGACATTCTTATGTTACGACGATTTGGTGAGATGACCGACGACTCTGCAAAAGGAACAA-ATATTAATGAT-AGGCCACAGTGTATGTGATGATAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   406848 196 +   591668 CCTGTGCAACGGTGCCGTCTCTTCGGATTTACT---TTTCTCATGCTTGCTCTTCGTTGCG---CGAGTTCCAAGAAGTCCGGCATTCTCATCGCAAGTTTCGACCTCGGATTCGGAAGCTCCAGATGACGACATTCTCACGTTTCGGCGATTCGGAGAAATAGCCGACGACTCTGCAATAGGAAAAA----------ATGAGGTTGTG---AAA----------
i caeJap4.Scaffold17934 C 0 I 647

a score=-3038.000000
s ce10.chrX              4995140 108 + 17718866 ACTAGT--------GACT------GTTATGTTGCAGTTAATAGA-------ATATGTGTCTGG----GCCACAAAAAAAAGAAGCGAATCTCTAAC--AGAATCAGTTTTGAAAAA------GGCGAAAACTTGATCTGCG
s cb4.chrX              10332165  72 + 21540570 GATTGT---------ATG------A-AGTGTTACA-----------------------TTGTG----GCCTAACGAAA-------GA--ATCTAAC--AGAAATA--TTGACA-------------AAAACTTGTTATACG
i cb4.chrX              C 0 I 661
s caeRem4.Crem_Contig0   1856907 119 -  4500979 TATAGCTAGGAAGCGATC------A-ACTGTTACAGTCAATTAACAACTGCATAAATGTCTTC----ACCTCAGAAAA-------GAATATCTAAC--AGagaca--ttcagaaaaaaactgaggGAAAACTTGATCTGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    186673 115 -   201088 GATTGT--------AACGTAGTCTG-TGTGTTACAGGATATCAACAACT--AGATGCGTTTTctacattctgaaaaag-------gaataatCTAACCAGCAACA--TTGGGAAAA------AGCGAAAACTTGATCTGCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3242927  94 +  4147112 GATTGT--------AACA------G-TGTGTTACAGA--------------CGTTATGTCTTCAGC-CCCAGAAAAAG-------GAATATATGAA--GGCGACA--CTGAAAAAAG----GGGCGAAAACTTGATCTG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407044 647 +   591668 I

a score=18702.000000
s ce10.chrX              4995248 183 + 17718866 TCATACTAACTATCCGCATCACACATGATCATCACG----ATTGGAGGTGAAAAAGA---CTATTTCTCTAAATAAAAAAAGGTAGCGTATTC-----AA---TGTTCATCTTTCTGTGTGGGGTCACACTTCAGTGAGAAGCCTTGCCAAAAA---CAGATGTGAAATTATTACACAGTGGCTTTTTGAAATTATCAGAT
s caeRem4.Crem_Contig0   1857026 172 -  4500979 TCAT----TGCATTCTCATCACACTTCATCGTTAT-----GTGGGaggtaaaaaaaaagacaacgaTTCTAG------AAAGGAAGTGTATTTT----AAAGCTGTTCATCTAAGCGC-CGGGGTCACAGTTTAATTGTCGATTCCACTCAAAAAAGCAGACGTAACACTATTCCGA---------TTGAATTCAGCAGAT
i caeRem4.Crem_Contig0  C 0 I 535
s caeSp111.Scaffold409    186788 171 -   201088 TCAT----AGCGCCCTCATCAcatttcatcgtttttgGTGGTGGGAGGTGAATATCG---CAATGATTTTAG--------AGGaagtcttttttc---aaagctgTTCATCTACGCGCAAGAGGTCACAGTTTAATTCTCATCTCCACTGAAAA---CATATGTTACACCTTCGCGA---------TCGAAATTATCAGAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3243021 152 +  4147112 ---------GCGTCCTCATCATA------CGCTT------GTGGGAGGTAAAAAAGG--TCTACGCTTACAG--------AGGaagtctctttttcaaaaagctgttCAGTATTGCGCAAGGGGTCACGGTTTAATCgac-ttttcactgaaaa---catgTGTTACACTAT--------------TCGAAGTTATCagat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407044 647 +   591668 I
e cb4.chrX              10332237 661 + 21540570 I

a score=-608.000000
s ce10.chrX              4995431 4 + 17718866 CGAG
s caeSp111.Scaffold409    186959 4 -   201088 CAAG
i caeSp111.Scaffold409  C 0 I 455
s caePb3.Scfld02_0       3243173 3 +  4147112 gaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407044 647 +   591668 I
e cb4.chrX              10332237 661 + 21540570 I
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=477.000000
s ce10.chrX              4995435 20 + 17718866 GCATGAAATGCATGAATTCt
s caePb3.Scfld02_0       3243176 20 +  4147112 gattgaaagtcttgaaattt
i caePb3.Scfld02_0      C 0 I 531
e caeJap4.Scaffold17934   407044 647 +   591668 I
e cb4.chrX              10332237 661 + 21540570 I
e caeSp111.Scaffold409    186963 455 -   201088 I
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=0.000000
s ce10.chrX              4995455 2016 + 17718866  
e caePb3.Scfld02_0       3243196  531 +  4147112 I
e caeJap4.Scaffold17934   407044  647 +   591668 I
e cb4.chrX              10332237  661 + 21540570 I
e caeSp111.Scaffold409    186963  455 -   201088 I
e caeRem4.Crem_Contig0   1857198  535 -  4500979 I

a score=147.000000
s ce10.chrX              4997471 9 + 17718866 TTAACTGAA
s caeSp111.Scaffold409    187418 9 -   201088 tttattaat
i caeSp111.Scaffold409  I 455 C 0
e caePb3.Scfld02_0       3243196 531 +  4147112 I
e caeJap4.Scaffold17934   407044 647 +   591668 I
e cb4.chrX              10332237 661 + 21540570 I
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=865.000000
s ce10.chrX              4997480 29 + 17718866 TTTTTCC--------CATATTTTT--------CCACAATTTTCCT
s caeSp111.Scaffold409    187427 35 -   201088 tttttccgtcGCGgtcataatttt--------taataatttct--
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   407691 37 +   591668 tttttta--------aatattttttgttgttattgcaatttttct
i caeJap4.Scaffold17934 I 647 C 0
e caePb3.Scfld02_0       3243196 531 +  4147112 I
e cb4.chrX              10332237 661 + 21540570 I
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=-553.000000
s ce10.chrX              4997509 3 + 17718866 TA---A
s caeJap4.Scaffold17934   407728 6 +   591668 ctcATA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3243196 531 +  4147112 I
e cb4.chrX              10332237 661 + 21540570 I
e caeSp111.Scaffold409    187462 0 -   201088 C
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=546.000000
s ce10.chrX              4997512 1 + 17718866 A
s cb4.chrX              10332898 1 + 21540570 A
i cb4.chrX              I 661 C 0
s caePb3.Scfld02_0       3243727 1 +  4147112 a
i caePb3.Scfld02_0      I 531 C 0
s caeJap4.Scaffold17934   407734 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    187462 0 -   201088 C
e caeRem4.Crem_Contig0   1857198 535 -  4500979 I

a score=44892.000000
s ce10.chrX              4997513 114 + 17718866 AAACACTTACCAGAGTCGGGATGTCCACTGTTCATGGCGTAGAGCTCAATTTTGCTAGAAAC--TGAATGATTTTAGACAGGAATCTGGCAGAAA----AACGGGAAACG---CTCGAGAAAA
s cb4.chrX              10332899 110 + 21540570 TAATACTCACCGGTCTCGTTTTGTCTGTGGTTCATGACGTGAAGCTCAATCTtgctaaaaaa-ataaacaaatgagcattaaaa-----cacttg----gattcaaaaca---aaaaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1857733 114 -  4500979 aaataCTTACCAGAGTCGTTATGTCCGCTATTCATGGCGTGGAGCtcaattttgctgaaaactatGAAAGTTTAGTCGGAATAA-----CACGTA----AGTAAGCAAcatagaagagaaaaa
i caeRem4.Crem_Contig0  I 535 C 0
s caeSp111.Scaffold409    187462 114 -   201088 aAATACTTACCGGAGTCGTTTTGTCCGTTGTTCATGACGTAGAGCTCAATCTTGCTGAAAAGAACTAG-ATTTTATTATAAGAA-----CAAACA-CGAGACGAGTGTCACAGaac--gaaaa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3243728 113 +  4147112 aaatactTACCAGAGTCGTTATGTCCGTTATTCATGGCGTACAGCTCAATTTTGCTGAAAGAAATCA-----TTGTTGAatgaa-----taaatagaaaaacaaatagcAAGGAACGAGAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   407735 103 +   591668 AAACACTCACCAGAGTCGATATTTCCGCGGTTCATGGTGTGAAGCtcaattttgctgaaaaatatctagaattattcagaaaaa-----taaaaa------------tta---caggaaaaaa
i caeJap4.Scaffold17934 C 0 I 460

a score=-865.000000
s ce10.chrX              4997627 29 + 17718866 Caaatt-aataatttaattt---tctaatttta-
s cb4.chrX              10333009 17 + 21540570 taatcgttataattcaa-----------------
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   1857847 28 -  4500979 caatta-tataattgagtt----tttaattttg-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409    187576 30 -   201088 caatttttataattgaGTT----CACCATTTTCT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3243841 34 +  4147112 CGATTAGAATAATTGAGTTTTACcatgatttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=-4826.000000
s ce10.chrX              4997656 61 + 17718866 aaaCCCATTTC-ATTAAAATAACACACTGATTGTTGGAATATTAAACA--AAAAATGACTGAAA
s caeRem4.Crem_Contig0   1857876 61 -  4500979 ctACCGATTTCATTACAAATATAGGGCTCaggttg-aaattttcaacattgaACGTAgctaa--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409    187606 58 -   201088 ACGCCTATTTC-TCTTAATTAACCAGCAAaacttgcattttttgacta-aaaaactctct----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3243875 58 +  4147112 ----cggtttt-cactGATTAACGGCCTAAATATGTGAAAATTCAGTACAAAAACGGATTAAA-
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333026 48 + 21540570 I

a score=311.000000
s ce10.chrX              4997717 2 + 17718866 AC
s caeRem4.Crem_Contig0   1857937 2 -  4500979 ac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    187664 2 -   201088 at
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3243933 20 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333026 48 + 21540570 I

a score=-199.000000
s ce10.chrX              4997719  8 + 17718866 --------CATGAAAA
s cb4.chrX              10333074  8 + 21540570 --------CATGAAAA
i cb4.chrX              I 48 I 5
s caeRem4.Crem_Contig0   1857939  8 -  4500979 --------tttaaaaa
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold409    187666 15 -   201088 cgtggttttctagaa-
i caeSp111.Scaffold409  C 0 C 0
e caePb3.Scfld02_0       3243933 20 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=-1805.000000
s ce10.chrX              4997727 16 + 17718866 TAAAATGAGCAACAAA
s cb4.chrX              10333087 16 + 21540570 tcaaatgaagaagaaa
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1857952  6 -  4500979 tc----------gata
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold409    187681 14 -   201088 --agaaaaaatcaata
i caeSp111.Scaffold409  C 0 I 26
s caePb3.Scfld02_0       3243953 16 +  4147112 TCATACGAATTTCACA
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=-5365.000000
s ce10.chrX              4997743 30 + 17718866 ---ACACTTCTCAA---TAACAAAACATATAACGTG--------
s cb4.chrX              10333103 41 + 21540570 ---aaatttagaaacaatAATTAACTTTAGAAACCTCTAAAATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1857958 35 -  4500979 ---aattttatgaa-attaacaaACTAATGAA-----TAAATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3243969 20 +  4147112 ACAAATCTTGAGAA-------AAACCA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I
e caeSp111.Scaffold409    187695 26 -   201088 I

a score=7862.000000
s ce10.chrX              4997773 86 + 17718866 ----ATAAATAAGCAG-GAACTGGATTTGAAAAAATAG-CTGCATT---------CAT--TAAACACGCATCTGAGAAGAAATTGTCGGTGGAGCGTACTTGC
s cb4.chrX              10333144 90 + 21540570 TCAAGAAAATGAATGg-caaattgca---aaaaaatga-cTGCGATTG-------CATTAAAAACACATATCAAGAGGGGGAGTC-CAATGGGGCGCGTTTGC
i cb4.chrX              C 0 I 209
s caeRem4.Crem_Contig0   1857993 85 -  4500979 AC----AAATGAGCCG-GAACGGGGT---AAAAAATGA-CTCAATTGG-------CAT--AAAACacgcaacaaaaaaagagttctccgtggagcgcgtttgc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    187721 83 -   201088 ----GTAAATGAGCCG-GAAccgattc--aaaaaagga-cTGCGATGG-------AAT--AAAATACACTATGAGAGTCG---TCTCAacagagcgcgtttgc
i caeSp111.Scaffold409  I 26 C 0
s caePb3.Scfld02_0       3243989 86 +  4147112 ----GTAAATGAGCCGTaaaccaattc--aaaaaaacatctaCGAGGGTCACAAAAAC--AAAGCAAAGAAAGAGTG---------CAGacgagcgcatttgc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=-3093.000000
s ce10.chrX              4997859 2 + 17718866 TG--
s caeRem4.Crem_Contig0   1858078 2 -  4500979 --cg
i caeRem4.Crem_Contig0  C 0 I 285
s caeSp111.Scaffold409    187804 2 -   201088 -ac-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3244075 2 +  4147112 -at-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333234 209 + 21540570 I

a score=-577.000000
s ce10.chrX              4997861 39 + 17718866 ATCTCCTTGTTCAATGGCCG-GTGAGTGTGTGAGTGTGCG--
s caeSp111.Scaffold409    187806 39 -   201088 aCCCTCTTCCCCTATCTC---GTTGGAGTATTTGTGTGTGTG
i caeSp111.Scaffold409  C 0 I 1006
s caePb3.Scfld02_0       3244077 40 +  4147112 tgtGCCTCCCCCTTCCTATGGGTTGGAGTGTCTGTCTATG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333234 209 + 21540570 I
e caeRem4.Crem_Contig0   1858080 285 -  4500979 I

a score=373.000000
s ce10.chrX              4997900 4 + 17718866 TGTT
s caePb3.Scfld02_0       3244117 4 +  4147112 TGTT
i caePb3.Scfld02_0      C 0 I 271
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333234 209 + 21540570 I
e caeSp111.Scaffold409    187845 1006 -   201088 I
e caeRem4.Crem_Contig0   1858080 285 -  4500979 I

a score=0.000000
s ce10.chrX              4997904 787 + 17718866  
e caePb3.Scfld02_0       3244121 271 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I
e cb4.chrX              10333234 209 + 21540570 I
e caeSp111.Scaffold409    187845 1006 -   201088 I
e caeRem4.Crem_Contig0   1858080 285 -  4500979 I

a score=578.000000
s ce10.chrX              4998691 54 + 17718866 ATTAACTACTAATGTTAGATTGACATTCTTTTAAAAAAACCTTCTAAGTTTCAG
s cb4.chrX              10333443 46 + 21540570 ATTGTCTACAcatgggaatttgaaatt--tacaaaaaagt------agattcaa
i cb4.chrX              I 209 C 0
e caePb3.Scfld02_0       3244121 271 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I
e caeSp111.Scaffold409    187845 1006 -   201088 I
e caeRem4.Crem_Contig0   1858080 285 -  4500979 I

a score=267.000000
s ce10.chrX              4998745 17 + 17718866 ------AAATGTAATGTTTCAC----A
s cb4.chrX              10333489 25 + 21540570 aaaaggaaattatttgtttcagat--a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1858365 21 -  4500979 ------aaacgtATTGTTtcagttcag
i caeRem4.Crem_Contig0  I 285 C 0
e caePb3.Scfld02_0       3244121 271 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I
e caeSp111.Scaffold409    187845 1006 -   201088 I

a score=1119.000000
s ce10.chrX              4998762 12 + 17718866 -TTTTCATAAAAA
s cb4.chrX              10333514 12 + 21540570 ttttttgcAATG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1858386 12 -  4500979 tttttttcagga-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    188851 12 -   201088 ttttttttgaaa-
i caeSp111.Scaffold409  I 1006 C 0
e caePb3.Scfld02_0       3244121 271 +  4147112 I
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=45468.000000
s ce10.chrX              4998774 231 + 17718866 ATGAATCATC------A-------AG--TATGTTTGCGTACTCTCTCTCTCTCTCTTGG-TTTTTTCTCTGTGTGTGCCTTGTACAGCAGC-----GCCTCATTTGGCCCTCTACTGTCACACTCCCGTA---------------CCTTTTGCTTCACGATT-CGGTTTTTGTCTT----GTTTCGCAATCGTCTTATGATCT-------------GGT------GAGAATAAATCCCCTCTCTGTCGATGCCTTTCCTCCAGCAGCAGCA----GCC---CCATCCGATCGTACGCC
s cb4.chrX              10333526 257 + 21540570 ATGAATCACCTTCAGAAATCGTATG---TGTGTTTGTATACTC-----------------TCGTTCT-----CTTCTCTCCGTACAGCAGCAACAGACCTCATTTGG--TTACACAGTCACACTCCCAGGGTCTTCCATCTTCATTC-GTCGTTTCATAA---TAGTTCGTCTTCTTGCAATTGTG---TCGACAAAAGATCTTCCTCCCCCTAGAAACTTCACTTCGAATAAATCCGGACCCCGTCTAT-CTGTCTAGGCACCGCCAC------ATCCATCCAACCGATCGTACGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1858398 222 -  4500979 atgaaTCACC------ACCCGAGTG---TATGTTTGTGTACTC----------TGCTGGTTTGTTAC-----GTTCCTTTTGTACAGCAGC-----GCCTCATTTGGCCCTCCAATGTCACACTCCCGTG------------------TTCGTTTCacaaatttagtttttttttctctcgtttcgcAATCGTTGAAAGATCT------------AAGC------GAGAATAAATCCCGGCCCCA-CTAT-GCGTGCCTCGATCGTCAG------ACC---CCATTCGATCGTACGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    188863 221 -   201088 atgaatcatc------g-CCGAACAG--TATGTTTGTGTACTT----------GGCTGG-TTTTATG------TGCGCCCTGTACAGCGGT-----TCCTCATTTGGGCCTCGACTGTCACACTCTCGTA---------------CCTTTCCCCTTCT-----CAGTTTCCCTTCT----GTTTTACAATCGACAGAAGATCT------------CGGT------GAGAATAAATCCCTTGATGTCTTGTGCCGTCCTTCTACCTCCTCCTTCA-GTC---CCATTCGATCGTACGCC
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3244392 226 +  4147112 ATGAATCACC------ACCCGAACAGTATATGTTTGTGTACTC----------CTTTCG-TCGTGTG-----CCTCTCCTCGTATAGTAGC-----GCCTCATTTGGTCGTCTACTGTCACACTCCCGTA---------------CC-TACGCTTCCT-----CAGTtcgttttct--cgtttttgcaATCGACGGAAGATCT-------------GGT------GAGAATAAATCCCCTCCTGTCTTATGCCGTCCTTCTACCTCCAGCAAAACGCC---CCATCCGATCGTACGCC
i caePb3.Scfld02_0      I 271 C 0
e caeJap4.Scaffold17934   407838 460 +   591668 I

a score=211169.000000
s ce10.chrX              4999005 396 + 17718866 ATTCGC-CCAAGCATTACACTGTT----GGAAGGGCAAATACAC------ACACCGG--------------AGGAGC------CC-TTCT--TC-CCTTGCT------CTCATTTGTAGTCACTTCTC-TTTGCCGTCTCGGTTTTTCTCCCCT-TTCCTACACAAACACTCCCGAGACCTAGCATATCC-TCAAAATCCTCTGTGCCTCCCCCCCCCCCCGTTGCATTTT-ATTACTGA----------TTTTTCAAAGATTTTGCATAAAAATAGCAACC--------TTT-----------CAGCC-ACCGTATGTCGTCTGGAGATGCTCCGTTAGAAGTGGTAGGGGTGGAGAAAATTGGGTCCAAACCTAGAAGCAAAGAATTCTATCCGTTTGCTTACTCTCTTTTAGACTGTACCAAAGACGATTACTGCTGGACATGTCTTGGAGAGAACGTTGAATTGTAA
s cb4.chrX              10333783 392 + 21540570 ATTCGTCCCAAGCATTACACTGTTGGAAGGAAGGGCAAATACACACACAGACTCTCACATACAC---TCTCGGGAGC------CCGTCCAA-TCGCCCCACT------CTCATTTGTAGTCTCtgcct-t------------ctcttttttcctgcCCCTACACAAACAGCACCTA-CCTCCGCATATCC-ACTA---------AGATCCTCTT---------TGCATTTTCACTActgaatcttttttcttttctagaaatcaC-------ATTTGTCACG----------------------CCGCC-GTAGAATGTCGTCTGGAGATGCTCCGTTAGACGTCGTGGGTGTGGAGAAGATTGGGTCTAAACCAAAAAGTAAAGAATTCTACCCGTTCGCCTATTCCTTGTTAGACTCGACCAAAAACCATTACTGTTGGACTTGTTTAGGAGAAACTGTAGATTTGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1858620 388 -  4500979 ATTCGT-CGAAGCATTACACTGTT----GGAAGGGCAAATACAC------ACTCTCC----------------GAGC------CC-TCCTA-TC-TCCTGCT------CTCATTTGTAGTCTCTTCTC-TTTGCCG--TCGGTTTTTCTCCCCTTTTCCTACACAAACACTCCCGAGACGTCGCATATCC-TCAATATCTCCGGTGCTCTTCCC---------GTCGTTTTTATTACTGA------------TTGCAGACAACAT--------TTTGTGACG--------TTATTTGATTATTTCAGCCGGTTGAATGTCGTCTGGAGATGCTCCGTTAGAGGCGGTTGGTGTGGAAAAGATTGGGTCTAAACCGAAAAGCAAAGAGTTCTACCCGTTTGCCTATTCATTGATAGACTCCACCAAAGATCATTACTGTTGGACTTGTCTAGGAGAAACTGTTGAGTTGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189084 392 -   201088 ATTCGT-CCAAGCATTACACTGTT----GGAAGGGCAAATACAC------ACTCACA----------------GAgcccttctcc-tcct--tc-tcctgcT------CTCATTTGTAGTCTCTTCTC-TTTGCCG--TCAGTTTTTCTCCCCTTTTCCTACACAAACACTCCCGAGACCTCGCATATCC-TCCAAATCCTTCCTGCTCTTCCC-------ATTGCATTTTTAttactga-----------tttttgaataaaatc---tcAGTTTTTGATA--------CTTTCAG--------CGCC-GCCAAATGTCCTCCGGAGATGCACCGTTAGAAGTTGTCGGTGTGGAGAAAACAGGGTCTAAACCTAAAAGTAAAGAATTCTATCCTTTCGCCTATTCTTTGTTGGATTCTACCAAAGATCAATACTGTTGGACATGTTTAGGAGAAAAAGTTAATGTGTGG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3244618 395 +  4147112 ATTCGT-CCAAGCATTACACTGTT----GGAAGGGCAAATACAC------ACTCTCG----------------GAGC------CC-TCCT--TC-CCCTGCT------CTCATTTGTAGTCTCTTCTCTTTTGCCG--TCGGTTTTTCTCCCCTTTTCCTACACAAACATTCCCGAGACCTCTCATATCC-TCCAGATCCTTCCTGCTCTTCCC-------GTtgcatttttagttttga-----------ttttcaaaaattttg---aaaagtattaaCAGTCATAAGCTTTCAG-------CCGCC-GCT-TATGTCGTCTGGAGATGCACCGTTAGAGGTTGTTGGGGTGGAGAAAACCGGGTCTAAACCTAAAAGCAAAGAGTTCTACCCGTTTGCGTTCTCATTGCTTGATATCACCAAAAACGATTATTGTTGGGCGTGTTTGGGAGAGAAGGTTGAACTGTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   408298 330 +   591668 ATTTGC-TCAAACATTACACTGTT----GGATGGACAAATACAC------TCACTCA----CACCGATCGGCGCAGC------TC-TCCTGCTC-TCCTGCTCTCCTACTCATTTGTAGTCCACTCTC-TT---------------------------CTGCTCAAACACT------------CATATCCTTCGAGATCCTGCTTACCTTTCCC-------TTAACAATTT-----CTGA--------------------------------------------------CTTT----------------TCAGAATGTCAGCTGGAGATGCGCCGTTGGAAGTTGTAGGTGTGGAGAAGATTGGGTCTAAACCTAGAAACAAGGAGTTCTATCCGTTTGCTTATGCGCTTCTGGACAGTACCAAGAACGAATATTGCTGGACATGTCTTGCAGAAACTGTCAAAACGTAA
i caeJap4.Scaffold17934 I 460 I 2285

a score=2000.000000
s ce10.chrX              4999401 3 + 17718866 GTT
s cb4.chrX              10334175 3 + 21540570 GTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1859008 3 -  4500979 GTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189476 3 -   201088 GTG
i caeSp111.Scaffold409  C 0 I 1
s caePb3.Scfld02_0       3245013 3 +  4147112 GTT
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold17934   408628 2285 +   591668 I

a score=-1566.000000
s ce10.chrX              4999404 6 + 17718866 TGACTG
s cb4.chrX              10334178 2 + 21540570 TC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1859011 5 -  4500979 TCA-TA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3245016 32 +  4147112 I
e caeJap4.Scaffold17934   408628 2285 +   591668 I
e caeSp111.Scaffold409    189479 1 -   201088 I

a score=-3023.000000
s ce10.chrX              4999410 21 + 17718866 AAAAAAAGAGTCTTATGACAT
s cb4.chrX              10334180 21 + 21540570 CTCCAAATGATCTCAAATTAT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1859016 21 -  4500979 TTTTACAAAATCCTTGATTAC
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409    189480 16 -   201088 -----TAACAGgtgaaattat
i caeSp111.Scaffold409  I 1 I 13
s caeJap4.Scaffold17934   410913 17 +   591668 aaaaagaaaatttgaaa----
i caeJap4.Scaffold17934 I 2285 C 0
e caePb3.Scfld02_0       3245016 32 +  4147112 I

a score=67146.000000
s ce10.chrX              4999431 88 + 17718866 ACGTTGTT-TTCAGAACATGCGAACAATGTAAAGTTGCAAAATTTTGCTCGAAGCAATGTGAAACATCAGGAGCAATTGACCACAAGGT
s cb4.chrX              10334207 88 + 21540570 TGATAATG-TTCAGAACATGCGACAAGTGTAAAGTGGCAAAATTTTGTTCCAAGCAGTGTCAAACTTCGGGAGCCTTTGACCACAAGGT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1859039 86 -  4500979 --ATCTTC-TCCAGAACATGTGATCAGTGTAAAGTCGCAAGGTTTTGTTCCAAGCAATGTCAAGTTTTCGGAGCTTTCGACCACAAGGT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold409    189509 89 -   201088 ttttcattcttcagaACATGTGATGTGTGTAAAGTTGCAATGTTCTGTTCGAAAGAATGTCAAGCTTCAGGAACTTTCGACCACAAGGT
i caeSp111.Scaffold409  I 13 C 0
s caePb3.Scfld02_0       3245048 87 +  4147112 CCTTTATT-TCTAGAACATGTGGAGAGTGTGAAGTTGCAAAATTCTGTTCTAAGGAATGTCAAGCTTCCGGAGCCTTCGACCACAAGG-
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold17934   410930 88 +   591668 actttaaT-TGCAGAACATGCGAAAAGTGCAAAGTAGCAAGATTCTGCTCGGAAAAGTGCCAAGCTTCGGGTGCCTTTGATCATGAGGT
i caeJap4.Scaffold17934 C 0 I 84

a score=180.000000
s ce10.chrX              4999519 1 + 17718866 A
s cb4.chrX              10334295 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1859125 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189598 1 -   201088 G
i caeSp111.Scaffold409  C 0 I 26
e caePb3.Scfld02_0       3245135 0 +  4147112 C
e caeJap4.Scaffold17934   411018 84 +   591668 I

a score=-2224.000000
s ce10.chrX              4999520 68 + 17718866 CCTAAACTTAACACATTCAATTTTTAGTACTTGTGCAAAATACCTGCCCCAAAAATTTTACTAATACG---
s cb4.chrX              10334296 35 + 21540570 -------------TCTTTGATCTTTGGCGTTT----GAAATCC-------------------AACGGATAG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3245135 46 +  4147112 ---------------TTTGATCTCTGATGTTT--TAGGAACCCTTG-----AGAATTTTGTTAACGCG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   411018 84 +   591668 I
e caeSp111.Scaffold409    189599 26 -   201088 I
e caeRem4.Crem_Contig0   1859126  0 -  4500979 C

a score=-114.000000
s ce10.chrX              4999588 1 + 17718866 T
s caePb3.Scfld02_0       3245181 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   411018 84 +   591668 I
e cb4.chrX              10334331 0 + 21540570 C
e caeSp111.Scaffold409    189599 26 -   201088 I
e caeRem4.Crem_Contig0   1859126 0 -  4500979 C

a score=-2554.000000
s ce10.chrX              4999589 50 + 17718866 TTTTCATTCATTCATTTCTTCTATAAATGATAATTCAATGAAAACGTGAA
s caeSp111.Scaffold409    189625 34 -   201088 -TTTCCTTAg---actct-----------atttttcagtacGAATGCGg-
i caeSp111.Scaffold409  I 26 C 0
s caePb3.Scfld02_0       3245182 13 +  4147112 -------------ATTTC-----------ataattca-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   411018 84 +   591668 I
e cb4.chrX              10334331  0 + 21540570 C
e caeRem4.Crem_Contig0   1859126  0 -  4500979 C

a score=-12782.000000
s ce10.chrX              4999639 101 + 17718866 TGAAGTTTGTTTGTATGTTTAGGCTTGAAAAAACACTAATCCAGATATGGACAGAAAAAGGTCACGAGTACCCAATTTCTACTGAAATTTTTTGTTTTTAC--------------
s caeRem4.Crem_Contig0   1859126  27 -  4500979 -------------------------TGATG---------------------------------------------------------------TTTGATGTTCGGTGGGGcacaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189659  30 -   201088 --------------------cgctttgaaaaaatgct--------------caga-------------------------------------TCTTAATAC--------------
i caeSp111.Scaffold409  C 0 I 3
s caePb3.Scfld02_0       3245195  12 +  4147112 -------------------------tgaa----------------------------------------------------------------ttttttac--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   411018  84 +   591668 I
e cb4.chrX              10334331   0 + 21540570 C

a score=-7702.000000
s ce10.chrX              4999740 140 + 17718866 TTTTTTTTATATATAGTATGTATGTTATAGTTTTACAACAGTAAAAGGATTTCAAGACTTGTTTTTTATAACCCCTTAATTTTGCAATTG-ACACTATTTAGATATAATTTACACACATTTTTCTCTTGAAAATAATTCCA
s caeRem4.Crem_Contig0   1859153  42 -  4500979 -----------------------------------------ttcaaaattctagAG--------------------------------TATAGGCTACTCAGA--------------------------AAAGTATCGACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189692  32 -   201088 -----------------------------------------TGAAAGAATGTTGA---------------------------------TA-AGGATAATTGGA--------------------------AGA--------T
i caeSp111.Scaffold409  I 3 C 0
e caePb3.Scfld02_0       3245207   0 +  4147112 C
e caeJap4.Scaffold17934   411018  84 +   591668 I
e cb4.chrX              10334331   0 + 21540570 C

a score=-5100.000000
s ce10.chrX              4999880 37 + 17718866 ATAGGCAATAAAATACTTACGAC------ATGATATTCACTTT
s caeRem4.Crem_Contig0   1859195 27 -  4500979 ATAAGAAACAAACTTTC--------------GATATTAATT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    189724 21 -   201088 ATAAGGTTTGgaatttc---------------ctat-------
i caeSp111.Scaffold409  C 0 C 0
s caeJap4.Scaffold17934   411102 38 +   591668 ACAGATACAAAAACACctacattttttcatttatattt-----
i caeJap4.Scaffold17934 I 84 C 0
e caePb3.Scfld02_0       3245207  0 +  4147112 C
e cb4.chrX              10334331  0 + 21540570 C

a score=-274.000000
s ce10.chrX              4999917 5 + 17718866 TTTTT-
s cb4.chrX              10334331 3 + 21540570 --TTT-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1859222 3 -  4500979 --CTT-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold409    189745 5 -   201088 ttttt-
i caeSp111.Scaffold409  C 0 I 3
s caeJap4.Scaffold17934   411140 5 +   591668 -ttttc
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3245207 0 +  4147112 C

a score=34909.000000
s ce10.chrX              4999922 81 + 17718866 AGTACGAGTGTGGACCTTTGAAAAAATGCCCGGATTTGAACACTGATGAAAGAATGCTTATTAGAATTGTTGGACGGTATA
s cb4.chrX              10334336 81 + 21540570 AGTACGAATGTGGACCTTTACACAACTGCAAAGATCTCAATACAGACGAACGGATGCTTCTTAGAATTATTGGCAGATACA
i cb4.chrX              I 2 I 48
s caeRem4.Crem_Contig0   1859227 81 -  4500979 AGTATGAGTGTGGTGCcattcaaaaatgtgcagaTCTCAATACGGATGAGAGAATGCTGATCAGAATCATTGGTAGATACA
i caeRem4.Crem_Contig0  I 2 I 48
s caeSp111.Scaffold409    189753 28 -   201088 agt---cacGTAGAGCTTTCAGGATATTCTC--------------------------------------------------
i caeSp111.Scaffold409  I 3 C 0
s caePb3.Scfld02_0       3245207 81 +  4147112 aGTATGAATGTGGAgctctcaaaaaatgctcagatCTCAATACAGACGAAAGAATGCTTATCAGAATTATTGGAAGATACA
i caePb3.Scfld02_0      C 0 I 41
s caeJap4.Scaffold17934   411145 81 +   591668 agtatGAATGTGCAGGGCTCAAAAAGTGTCCGGATCTGAATACCGATGAGAGAATGTTGATCAGAATTATTGGAAGATTCA
i caeJap4.Scaffold17934 C 0 I 168

a score=271170.000000
s ce10.chrX              5000003 384 + 17718866 AGGATATTCAT-----------TCTGGAAAAGACAAAAGCATCGATGGATTTTACAACAACCGAGAGAGCAAGAGAAGCGTCATGGAAATTTGGGAGCACTGTGCGGATATGAAAAAAGATGAAAATGCTATGAAATCTTTTAAAAGTAGG---------GTTTT---CGAGTTTTTGAATTATTAAAAATAAAAGAAAACACTTCT-----------------AAATTCAGAAACCTACGATAGAGTGAAACAATTCGGCGACACTAATCATTTAATGGATGAAGAAGTAACGTTCCAGCTTCACTCCAGAAACTTCATCAATCGACATAGCATATCGAATGTGGATTATTTACGAGAAATTGGAAAAGGTCTTTATTTGGATCTTTGTAAATACGATCACTCTTGCAGACCTAATGCGGTAA
s cb4.chrX              10334465 401 + 21540570 AGGACATTCTC-----------GATgggaatgacaaaaaaattgatgggTTCTATACCAATCGAGAGAGTGGCCGAAGTGTCATGCAAATTTGGGAACATTGTGCTGATATGAAAAAGGACGAAAATGCAATGAATGTTTTTAAGAGTGAGTCTACTAGAGCTAC---GAAACTTTGGCGac---gaaatggagaaaaaaaacttcttatca---caaaag---tttttcagaaatttatgaCCGTGTGAAACAATACGGGGACAAAACGCACTTGGTTGACAAAGACACCGCTTTCCAACTTCATTCCAGAAACTTTATCAATCGACACAGCATTTCGAATGTAGACTATTtgagagaaattggaaaagggTTATATTTGGACCTCTGTCGTTATGATCACTCGTGCAGACCCAATGCGGTAc
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig0   1859356 370 -  4500979 aggACATTCTC-----------GATGGAAATGACAAGAAAATCGACGGATTCTACACTAACCGAGAAAGTGGAAGAACAGTTATGCAAATTTGGGAGCATTGCGCTGATATGAAGAAGGATGAGCATGCAATGaatgtttttaaaagtatGCC-------GTTTC---CAA--CTTGGCGTC----------------------TCTTAtc------tatt---tctttcagaaatttacGACCGCGTGAAACAATTCGGTGACAAAAACTATTTGGTCGATGAAGAAGTTGCTTTTCAACTTCACTCGAGAAACTTTATCAATCGTCATAGTATTTCGAATGTCGATTACTTGAGGGAAATTGGAAAGGGATTGTACTTAGATCTATGTCGTTACGATCATTCATGCAGACCCAACGCAGTAT
i caeRem4.Crem_Contig0  I 48 C 0
s caeSp111.Scaffold409    189781 358 -   201088 ----------------------GATggaaatgacaaaaaaatcaacggCTTCTATACAAATCgagaaagtggaagaagTATTATGGAGATTTGGGAGCACTGTGCTGATATGAAGAAAGATGAGAATGCAATGAATGCGTTTAATAGTGAGTT-------GATCAAACCAAAACC-------------------------------------GTTCAAGAAATTATTTACAGAGATTTACGAGCGTGTGAAACAATTTGGAgacaaaaatcatttggtcgatgaagaaactgtttttcaacttcattctagaaattttattaatCGGCACAGTATCTCAAATGTTGATTATTtgagagaaattggaaaaggaTTGTATTTGGATCTGTGTAGATACGATCACTCTTGTAGACCGAATGCGGTAa
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3245329 389 +  4147112 tgaacattttcaggaaataCAAGACGGGAATGACAAGAAAATCGAAGGATTCTACAAAAATCGTGAAAGTATCAGAAGCGTTATGCAAATTTGGGAGCATTGTGCTGATATGAAGAAAGATGAAAGTGcaatgaatgttttcaaaagtgagaG-------GCACA---CAAAACTTGGAGTT----------------------TCTtatcaattccaaaa---attttcagaaatatacgACCGTGTAAAAGAGTTTGgagacaaaaattatttggtcGATGAAGAAACTGCTTTCCAACTTCACTCCAGAAACTTTATCAATCGACATAGCATTTCAAATGTTGATTACTtgagagaaattggaaaaggatTGTATTTGGATCTCTGTCGTTATGATCACTCATGCAGACCAAATGCGGtga
i caePb3.Scfld02_0      I 41 C 0
s caeJap4.Scaffold17934   411394 371 +   591668 AGGACATTCGT-----------GACGGCAAAGATAAAAATATCAATGGATTCTACGAGAAGCGTGACAGTAAGAGAAGTGTAATGGAAATCTGGGAGCATTGTGAAGATATGAAGAAAGATGAAAATGCGATGAGAGCatttaaaagtatg---------atttt---caTATTt--gaact----------------------tcatttta---aaaaaa---actttcagaacTCTACACCAGAGTAAAAGAGTTTGGTGACAAAGAGCATTTGGTGGATGAAGAGACAGCATTCCAGCTTCACTCGAGAAACTTCATCAACCGTCACAGTATCTCAAATGTGGATTATTTGAGTGAGATTGGAAAGGGATTGTATTTAGATTTGTGCCGCTACGATCATTCTTGTAGGCCAAATGCGGTAA
i caeJap4.Scaffold17934 I 168 I 20

a score=-9530.000000
s ce10.chrX              5000387 23 + 17718866 AT----TTTTTTT------------AGATGTTTTTCTTA
s cb4.chrX              10334866 13 + 21540570 ga---------tt------------aaaatt-----tta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1859726 25 -  4500979 GT---------TTCTTCTTAACACGACTACT-----ATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190139 13 -   201088 gg---------ct------------gaaaaa-----ttg
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3245718 20 +  4147112 gagcttttttttt------------ggaaaa-------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   411765 20 +   591668 I

a score=94852.000000
s ce10.chrX              5000410 130 + 17718866 AATGAATGTTTTAA-----------------TTTTAGATCTACAGTTGTAACGGGATCGTGGCAAAGTTGCGAGCTCTTCATGATAATGTTGATTTAGAAAATGTCGAAACTACACATTACACCTACATTGAATTACCACCGTTAGT
s cb4.chrX              10334879 142 + 21540570 aagaaaagatggaaatcgattttt-----tttttcagatctacaGTTGCAATGGCACCGTAGCTAAACTTCGAGCTCTACACGACAACGTGGATTTGGAAAATGTGGAAACCACTCACTATACATATATCGAACTTCCTCCGTTagt
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0   1859751 133 -  4500979 AGTCATACAATGAA--CAA------------TTTCAGATCTACAGTTGCAATGGAACCGTCGCAAAACTACGAGCACTTCACGACAACGTTGATTTAGAAAATGTGGAAACAACTCACTACACTTATATCGAACTCCCTCCGTGAGT
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold409    190152 138 -   201088 agttcTCTTCTAAA----ATTATA-----TATCTTAGATATACAGCTGTAATGGAATAGTGGCAAAACTTCGAGCTCTTCATGACAATGTTGATTTAGAAAATGTAGAAACTACTCACTACACTTATATCGAGCTGCCACCGTAGgt
i caeSp111.Scaffold409  C 0 I 10
s caePb3.Scfld02_0       3245738 141 +  4147112 aaacaacgtcTGAA----CGTGTC--TGTTGTTTCAGATCTACAGTTGTAATGGAACAATTGCAAAATTGAGAGCTCTTCATGACAATGTTGATCTGGAAAACGTTGAGACTACTCACTACACCTACATTGAACTTCCACCGTaagt
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17934   411785 130 +   591668 -----------------aatgatttctttttttttagatctACAGTTGCAACGGAATCGTCGCAAATCTCAGAGCTCTACACGATAACGTTGAGTTGGAAAACGTGGAAACCACACACTACACCTATATAGAGCTTCCACCGTTAGT
i caeJap4.Scaffold17934 I 20 C 0

a score=-7207.000000
s ce10.chrX              5000540 35 + 17718866 ATTTTGAGA-GTATAATTTTTTTAAACTGTAACTTT
s caeRem4.Crem_Contig0   1859896 28 -  4500979 aaaatgaga-aaacaagtTCTTGACATTG-------
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold409    190300 20 -   201088 aatatC----AAATGACTGAATTA------------
i caeSp111.Scaffold409  I 10 C 0
s caePb3.Scfld02_0       3245890 24 +  4147112 catattagaaaaaaaactttttca------------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17934   411915 20 +   591668 ----------------CTTACTTAAAATGTAAATAG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10335021 32 + 21540570 I

a score=158216.000000
s ce10.chrX              5000575 286 + 17718866 -------------AATTTCCAGCTGTAAAATCCAGCGTCGTCATATGCTTAAAGAAACATGGTATTTCGAATGTCACTGTGAAAGATGTGACGATCCAGATGACAACTGGCTAACATCAGTTCTTTGCCCAGTTTGCATTTCAAAGGTATA------CTTTGTAT----T----------------------------------------------------------------AAAA---------------------------ATATATATAACTA------ACTTATTCATTTTTCAGACAGAATATCGAAAAACAATTAAACTACATGGTCCGGAGGCATATGCGAATCCTGAAACATTGGAGATTGTATGTGATAGATGCAGTACCACGTTGGATAGGGTA
s cb4.chrX              10335053 284 + 21540570 -------------aaattgcAGGTGTAAAATCCAGCGGCGCCACATGCTCAAAGAAACGTGGTACTTCGAATGTCACTGTGAGCGATGTGATGATCCGGAGGATAACTGGCTTACAGCTGTTATTTGTCCGGTTTGTATTGCGAaggtaaa---aagaaaaatta-aaga----------------------------------------------------------------aaaa---------------------------agacaaattgcAA--------------CTTTTTTAGACCGAATTTCGTAAAACGATCAAACTGCATGGCCAGGAAGCGTATTTCAATTCAGAAACGTTGGAAATTGTCTGCGATAGATGTCACACCACACTAGACAGggtt
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   1859924 280 -  4500979 -------------------CAGGTGCAAAATCCAGCGTCGTCACATGCTTAAAGAAACGTGGTATTTTGAGTGTCATTGCGAAAGATGTGAGGATCCAGAGGATAACTGGCTGACTGCTGTTATTTGTCCTGTCTGTATTTCTAAAGTAGGTTCAAGTTTAGTTGTTGGT----------------------------------------------------------------AAAA---------------------------TTATATATTGGAG----------------TTTTCAGTCTGAGTTCCACAAGACAGTCAAGCTACATGGACCAGAGGCATATGCAAATCCTCAAACTTTGGAAATTATCTGTGATAGATGTAACAATACACTCGAAAGAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190320 284 -   201088 -------------TGATTTTAGATGCAAAATTCAACGCCGTCACATGCTGAAAGAGACATGGTATTTCGAATGCCATTGTGATAGATGTGATGATCCAGAAGACAATTGGCTTACTGCTGTTATTTGTCCAGTTTGCATTTCAAAGGTTTG--CCTGTTGAGTTT---GA----------------------------------------------------------------AACA---------------------------TCATATAAAACAT-------------ACCTTTACAGACTGAGTTCCGGAAAACCGTCAAACTGCACGGTCCCGAAGCATATGCAAATCCCGAAACACTAGAAATCGTCTGTGAAAGATGCCATACAACTCTTGACAGAGTG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3245914 388 +  4147112 -------------aatttgcagaTGCAAAATCCAACGTCGCCACATGTTGAAAGAAACTTGGTACTTCGAGTGTCACTGTGATAGATGTGATGACCCAACAGACAATTGGCTTACTGCTGTGATTTGTCCAATTTGCATTGCGAAGGTTTG--TCAGTTTTGTTT---GGTCAGATATAAGACTACTTGACCTAGAAAGTATTTGGTGGGAAATACTGGTTGtatattttcttcaacaaaCTTAGCAAGGCCTCCATATCTGTGTTCAACTAGAAcataaaattataaataatcctTGCAGACTGAGTTCCGGAAAACTATCAAACTCCATGGCCCAGAAGCATATGCTAATCCGGAAACGTTGGAGATTGTGTGCGAAAGATGCAACACTACTCTTGATAGAGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   411935 251 +   591668 AACGAGAACAAAATAACCACAGGTGCAAAATCCAGCGGCGGCACATGCTGAAAGACACGTGGTACTTTGAATGTCATTGTGATCGGTGCGACGATCCTGATGACAATTGGCTGACCGCCGTCATTTGCCCCACTTGTGTTTCTA------------------------------------------------------------------------------------------AAAA-----------------------------------------------------------------CGAGTTCCGGAAAACTCTAAAACTGCATGGTTCGGAAGCATACGTAAATCAGGAAACTCTGGAAATTGTTTGCGATACGTGCAAATCTTCGCTTGATAGGGTA
i caeJap4.Scaffold17934 C 0 C 0

a score=1910.000000
s ce10.chrX              5000861 2 + 17718866 AG
s cb4.chrX              10335337 2 + 21540570 ag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    190604 2 -   201088 AG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3246302 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   412186 2 +   591668 AG
i caeJap4.Scaffold17934 C 0 I 302
e caeRem4.Crem_Contig0   1860204 0 -  4500979 C

a score=-1819.000000
s ce10.chrX              5000863  7 + 17718866 GATTTTT--------
s cb4.chrX              10335339 15 + 21540570 aatttgaaaattcct
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold409    190606  7 -   201088 TATCGtt--------
i caeSp111.Scaffold409  C 0 I 23
s caePb3.Scfld02_0       3246304  7 +  4147112 TATCTGA--------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17934   412188 302 +   591668 I
e caeRem4.Crem_Contig0   1860204  0 -  4500979 C

a score=-959.000000
s ce10.chrX              5000870 23 + 17718866 CACAAAAAAATTGTGTAGAATTG---
s cb4.chrX              10335354 23 + 21540570 tacTATAATATTATTTAAAATCG---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3246318 23 +  4147112 ---tagaaaaaaaatgaaaggaattc
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17934   412188 302 +   591668 I
e caeSp111.Scaffold409    190613 23 -   201088 I
e caeRem4.Crem_Contig0   1860204  0 -  4500979 C

a score=-89.000000
s ce10.chrX              5000893 10 + 17718866 TAGT-----AAAAAA
s caePb3.Scfld02_0       3246341 15 +  4147112 cattacacaaaaaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   412188 302 +   591668 I
e cb4.chrX              10335377  0 + 21540570 C
e caeSp111.Scaffold409    190613 23 -   201088 I
e caeRem4.Crem_Contig0   1860204  0 -  4500979 C

a score=0.000000
s ce10.chrX              5000903 1597 + 17718866  
e caePb3.Scfld02_0       3246356    0 +  4147112 C
e caeJap4.Scaffold17934   412188  302 +   591668 I
e cb4.chrX              10335377    0 + 21540570 C
e caeSp111.Scaffold409    190613   23 -   201088 I
e caeRem4.Crem_Contig0   1860204    0 -  4500979 C

a score=569.000000
s ce10.chrX              5002500 31 + 17718866 AGTTTATCCCTTTGATGTTTTTTTT----AAGTTT---
s caeRem4.Crem_Contig0   1860204 38 -  4500979 AGtttgtaacttttgtgttattttttgacacgtttgtc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3246356  0 +  4147112 C
e caeJap4.Scaffold17934   412188 302 +   591668 I
e cb4.chrX              10335377  0 + 21540570 C
e caeSp111.Scaffold409    190613 23 -   201088 I

a score=302.000000
s ce10.chrX              5002531 2 + 17718866 TT
s caeRem4.Crem_Contig0   1860242 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190636 2 -   201088 TC
i caeSp111.Scaffold409  I 23 C 0
e caePb3.Scfld02_0       3246356 0 +  4147112 C
e caeJap4.Scaffold17934   412188 302 +   591668 I
e cb4.chrX              10335377 0 + 21540570 C

a score=1092.000000
s ce10.chrX              5002533 2 + 17718866 TT
s caeRem4.Crem_Contig0   1860244 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190638 2 -   201088 TT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3246356 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   412188 302 +   591668 I
e cb4.chrX              10335377 0 + 21540570 C

a score=697.000000
s ce10.chrX              5002535 3 + 17718866 TTT
s caeRem4.Crem_Contig0   1860246 3 -  4500979 ttA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190640 3 -   201088 GTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3246358 3 +  4147112 ttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   412490 3 +   591668 TTT
i caeJap4.Scaffold17934 I 302 C 0
e cb4.chrX              10335377 0 + 21540570 C

a score=491979.000000
s ce10.chrX              5002538 937 + 17718866  
s cb4.chrX              10335377 884 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1860249 876 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    190643 940 -   201088  
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3246361 963 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   412493 946 +   591668  
i caeJap4.Scaffold17934 C 0 I 460

a score=546.000000
s ce10.chrX              5003475 2 + 17718866 TT
s caeSp111.Scaffold409    191583 2 -   201088 TT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3247324 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold17934   413439 460 +   591668 I
e cb4.chrX              10336261 0 + 21540570 C
e caeRem4.Crem_Contig0   1861125 0 -  4500979 C

a score=207.000000
s ce10.chrX              5003477 1 + 17718866 C
s cb4.chrX              10336261 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1861125 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    191585 1 -   201088 C
i caeSp111.Scaffold409  C 0 I 690
e caePb3.Scfld02_0       3247326 44 +  4147112 I
e caeJap4.Scaffold17934   413439 460 +   591668 I

a score=-4982.000000
s ce10.chrX              5003478 158 + 17718866 AATCCCATTTGTTGCATCCAAAACGCGCCAGTTCCAAAAAAATGTCAGGTTTTCAAAAAGTAAATACACTTACTAATAATTATAGGACCCCTTGGACCCCTGACAATAAGTTCTCTCATCGAACCAAACTAAAGCGGTGT--------------AAAAACTTGCAGACTGCG---
s cb4.chrX              10336262 100 + 21540570 tactttattgtttgaaattaaa-------atttcca---------------tttcaaaTGTGAATCTTCGGAAT------------GTTtc---------------taattc-------------aatttcaaaaactgt-------------caaaaatctCCAGACAGCGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1861126 125 -  4500979 TTTCTCAGATTTTGCATTCAAG-------agttc--------------------caaaaataaatattcacaCT------------CTCCC-----CCCTacactatacttttt----tcaaa--aatatcacaagCTGTTCTGAAATGGCACCGAAAACTGTCAGACAAGCAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3247326  44 +  4147112 I
e caeJap4.Scaffold17934   413439 460 +   591668 I
e caeSp111.Scaffold409    191586 690 -   201088 I

a score=16503.000000
s ce10.chrX              5003636 44 + 17718866 AATGACTGTACGTCTGGCCTTTTGTTGCTCGATCAGAAACCACA
s cb4.chrX              10336362 44 + 21540570 AATGACTGTACGTCTGGTCCATTGTGCATCGATCAAGAATTGCA
i cb4.chrX              C 0 I 889
s caeRem4.Crem_Contig0   1861251 44 -  4500979 AATGACTGTTCGTCTGGTCTATTGTGCATCGATCAAAAATTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3247370 44 +  4147112 AATGACTGTACGTCTAGTCGATTGTGCATCGATCAAGAATTGAA
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold17934   413439 460 +   591668 I
e caeSp111.Scaffold409    191586 690 -   201088 I

a score=3594.000000
s ce10.chrX              5003680 72 + 17718866 ATGTTTTGTTCTCTTTCAAAATGTGC-TTGTTTTAATTTTCTTT-TGAAAATGGAAAATACGTGAATCAATTCT
s caeRem4.Crem_Contig0   1861295 72 -  4500979 AGCTATTGTT--AAGAGGCGCTGAAcattgtttcgttttctttgaaGGAACCCAAAAATATATGAATCAATTCT
i caeRem4.Crem_Contig0  C 0 I 475
s caePb3.Scfld02_0       3247414 74 +  4147112 GCCTATTGTTCAACGAAAAAAGGGGTATTGTTTTGATTCGTTTCACGAAAAGCAAGGAAATATGAATCAGTTCT
i caePb3.Scfld02_0      C 0 I 1073
e caeJap4.Scaffold17934   413439 460 +   591668 I
e cb4.chrX              10336406 889 + 21540570 I
e caeSp111.Scaffold409    191586 690 -   201088 I

a score=0.000000
s ce10.chrX              5003752 1366 + 17718866  
e caePb3.Scfld02_0       3247488 1073 +  4147112 I
e caeJap4.Scaffold17934   413439  460 +   591668 I
e cb4.chrX              10336406  889 + 21540570 I
e caeSp111.Scaffold409    191586  690 -   201088 I
e caeRem4.Crem_Contig0   1861367  475 -  4500979 I

a score=91.000000
s ce10.chrX              5005118 1 + 17718866 T
s caeRem4.Crem_Contig0   1861842 1 -  4500979 t
i caeRem4.Crem_Contig0  I 475 C 0
e caePb3.Scfld02_0       3247488 1073 +  4147112 I
e caeJap4.Scaffold17934   413439 460 +   591668 I
e cb4.chrX              10336406 889 + 21540570 I
e caeSp111.Scaffold409    191586 690 -   201088 I

a score=819.000000
s ce10.chrX              5005119 3 + 17718866 AAA
s caeRem4.Crem_Contig0   1861843 3 -  4500979 AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3248561 3 +  4147112 aaa
i caePb3.Scfld02_0      I 1073 C 0
e caeJap4.Scaffold17934   413439 460 +   591668 I
e cb4.chrX              10336406 889 + 21540570 I
e caeSp111.Scaffold409    191586 690 -   201088 I

a score=-770.000000
s ce10.chrX              5005122 7 + 17718866 AAACGAA--
s caeRem4.Crem_Contig0   1861846 7 -  4500979 --GAAAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    192276 7 -   201088 aaaaaaa--
i caeSp111.Scaffold409  I 690 C 0
s caePb3.Scfld02_0       3248564 7 +  4147112 atataga--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   413439 460 +   591668 I
e cb4.chrX              10336406 889 + 21540570 I

a score=3186.000000
s ce10.chrX              5005129 84 + 17718866 AGAATGAACTATCCAAG---AGGCGTGCCATGGCCGAC-TCATTTTGATAAGAAA-GCG----------AAAAAAAAATGAACAAAAATTCC-------------AGTATAA
s cb4.chrX              10337295 73 + 21540570 AGAATGAACTGGCCCGA---AGGCGTGTCAT-----TCGCCGTTCTGATTTGAAC-Aca--------------------gaaagaaaacttt----------ttattttcag
i cb4.chrX              I 889 C 0
s caeRem4.Crem_Contig0   1861853 92 -  4500979 CGAATGAACTGTCAGAAATGAGGCGTGTCATGATTGTTCCCATCATGAATGGAACGGCA--------------------GAAAAATGGCTTTAACACAATGCCTGTATTTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    192283 83 -   201088 acaatgaactGTCTCAG---AGGCGTGTCTTGAATgtcttcattcaaatgaaaag-aaa---------------aatatgagaaaggAATTC----------CTTATTTAAA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3248571 95 +  4147112 aGAATGAACTGTCTTGG---GGGCGGGACATGACTgttctttttcgaattggaAG-ACATAAAA---GAGGACGAAAATGAGAAGCAATGCC----------ATTATTTCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   413899 91 +   591668 AGAATGAACTGTCTAGA---AGGCG-----TGGTCGCTCTTCTCTTGGAAAAAAT-GGGCAATGCTTTTTTATATTAAAGAAATACAACTTC------------CATTGCAA
i caeJap4.Scaffold17934 I 460 I 19

a score=-13225.000000
s ce10.chrX              5005213 38 + 17718866 AACGGAGCTACC----------------------------GAAGAGGAAGCT----------GATTAAATT---------TTCGA
s cb4.chrX              10337368 38 + 21540570 agaaacggTTCT--------------------------------GAGAAACTTTCTCCGGA-AATCGAATG--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1861945 71 -  4500979 AGACACATTTCCAGACCAATATGATCAGTGCTAAAAAACTGACGAAGAAACTatcgaagaagaagcagatg--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    192366 37 -   201088 GAAAACGATTGC---------------------------------AGACACT----------GCTGAAATGTCTGC----TTCT-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3248666 41 +  4147112 CATTATGATTAC---------------------------------AGAAGCT----------GTTCATATGACCACAGTTTTCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   413990 19 +   591668 I

a score=54086.000000
s ce10.chrX              5005251 181 + 17718866 AATGGGCCACTATGTTATAGTCGGTGGTGGTGGCTTTCTTGGAGCCCATGTTATCTCCGCGCTCCAGAAGATTGGCTGCAAAGAGCGTATTATCGTTGTGGATCCGTGCCCGCAAGAATTCAAAACTATCAAAATTGATAAAAGCAATATTTCTTACATCAAGGT--ACGTTT--TAATAATCTT
s cb4.chrX              10337406 175 + 21540570 ----GGACACTACGTGATCATTGGCGGCGGTGGATACCTCGGAGCAAATGTCATCCGAGCTCTTCAAAAGAATGGCTACCAAGAACGGATAATTGTTGTAGATCCAACTCCGATGGAGTTCCCAACTGTGCAATTCAGCAGGCAACTTGTAGACGTTGTCGAGGT------TTGTGAAATATTCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1862016 167 -  4500979 ----GGCCATTTTGTGATTATTGGAGGCGGCGGGTACCTTGGAGCTAATATTATTCATCGCCTTCAAAAACATGGTTGTGAGAATAAAATTATCGTAGTTGATCCATATCCACGTGTATTCCAAACTATCAGTATTAATAGAGACAATGTAACTTTCATAAAGGT------AT--------TCCT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold409    192403 179 -   201088 ----GGACGCTATGTCATTGTAGGTGGTGGTGGTTACCTCGGTGCAAAGGTGATTTCTCGATTGCAATCTGAAGGATTCAATGGAGTGATTGTTGTAGTTGATCCCAATCCTCAGAAGTTcgaaacaattgaaatggaTCAAAGCAAGATTCTTTATGTAAAGGT--ATATTTGATGATAGTCTT
i caeSp111.Scaffold409  C 0 I 19
s caePb3.Scfld02_0       3248707 183 +  4147112 --TGGGTCGCTATGTAattgttggtggtggtggtttctTGGGTGCAAAAGTCATCGAAGGACTTCGATCCAGTGGGTTTGTTGgcgagattactgtagtggATCCGAACCcgcaagttttcaaaactattgattttGATCCGAGTCAAGTGAATTATATTGAAGTGAgcttttgtttgaaatgtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   414009 175 +   591668 AATGGGCCACTATGTCATCATTGGTGGCGGTGGCTTTTTAGGAGCTCATATTATCTCCACGCTGCAGAAAAATGAGTTTGATCGGAGGATTATTGTAGTTGATCCAACTCCAAGAAAGTTTGAAACAGTGCAGGTTGATGAGAAGCTTGTTACTTATTGGAAAGT----------TGGTAGACTT
i caeJap4.Scaffold17934 I 19 C 0

a score=-5775.000000
s ce10.chrX              5005432 18 + 17718866 AGCAATTAATAGCACCTA------
s cb4.chrX              10337582 13 + 21540570 --AAATT---AAGAAata------
i cb4.chrX              I 1 I 5
s caeRem4.Crem_Contig0   1862184 16 -  4500979 --CACTTTTCATGTtata------
i caeRem4.Crem_Contig0  I 1 I 13
s caePb3.Scfld02_0       3248890  8 +  4147112 ----------ttgctgTA------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   414184 24 +   591668 GAAAGTTAAAATATAATATAATTG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    192582 19 -   201088 I

a score=246868.000000
s ce10.chrX              5005450 701 + 17718866  
s cb4.chrX              10337600 708 + 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1862213 708 -  4500979  
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold409    192601 697 -   201088  
i caeSp111.Scaffold409  I 19 I 20
s caePb3.Scfld02_0       3248903 702 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   414208 713 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=1097.000000
s ce10.chrX              5006151 2 + 17718866 AA
s cb4.chrX              10338308 2 + 21540570 Aa
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   1862921 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3249605 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17934   414921 2 +   591668 GA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold409    193298 20 -   201088 I

a score=-1169.000000
s ce10.chrX              5006153 77 + 17718866 AATAATAATAGAAATAATTtggagtagcgtcagtaagtaaatcgttaaaaattacgcatatggtgccaaaataacaa
s caeJap4.Scaffold17934   414923 16 +   591668 -------------------------------------------------------------GTTCCCAAAcgaacaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3249607 27 +  4147112 I
e cb4.chrX              10338310 37 + 21540570 I
e caeSp111.Scaffold409    193298 20 -   201088 I
e caeRem4.Crem_Contig0   1862923  0 -  4500979 C

a score=0.000000
s ce10.chrX              5006230 117 + 17718866 aatatcatattaaTAATTTTCTAATTATGTTTATAAAATTAATATTCACGAATTGTAAGGATTGGAACATACAGTGGTTTTTATTTTTTAAGTGAAAACAACACagttattatcact
e caePb3.Scfld02_0       3249607  27 +  4147112 I
e caeJap4.Scaffold17934   414939   0 +   591668 C
e cb4.chrX              10338310  37 + 21540570 I
e caeSp111.Scaffold409    193298  20 -   201088 I
e caeRem4.Crem_Contig0   1862923   0 -  4500979 C

a score=244.000000
s ce10.chrX              5006347 20 + 17718866 ttttagactgtaaaagtaca
s caeJap4.Scaffold17934   414939 15 +   591668 ttttaaaatatgaAA-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3249607 27 +  4147112 I
e cb4.chrX              10338310 37 + 21540570 I
e caeSp111.Scaffold409    193298 20 -   201088 I
e caeRem4.Crem_Contig0   1862923  0 -  4500979 C

a score=-6994.000000
s ce10.chrX              5006367 115 + 17718866 gtttcaaaaatttgtttgaaaagttttattatagaatttggtaattttggcaacatacgagtggttttattaacttcaccactggcgttacttcagcAGTGAATTTAAAATGATA
s caeRem4.Crem_Contig0   1862923  25 -  4500979 gtttcaa-----tgtttcaaaa---------------------------------------------------------------------------------tctaaaat----
i caeRem4.Crem_Contig0  C 0 I 9
s caeJap4.Scaffold17934   414954   4 +   591668 -CTTC--------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3249607  27 +  4147112 I
e cb4.chrX              10338310  37 + 21540570 I
e caeSp111.Scaffold409    193298  20 -   201088 I

a score=0.000000
s ce10.chrX              5006482 17 + 17718866 TATTTAATATTCAAAAC
e caePb3.Scfld02_0       3249607 27 +  4147112 I
e caeJap4.Scaffold17934   414958  0 +   591668 C
e cb4.chrX              10338310 37 + 21540570 I
e caeSp111.Scaffold409    193298 20 -   201088 I
e caeRem4.Crem_Contig0   1862948  9 -  4500979 I

a score=-2274.000000
s ce10.chrX              5006499 5 + 17718866 --GCA-TT
s caeSp111.Scaffold409    193318 5 -   201088 --gta-tT
i caeSp111.Scaffold409  I 20 C 0
s caePb3.Scfld02_0       3249634 6 +  4147112 --atactt
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17934   414958 4 +   591668 CAAT----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10338310 37 + 21540570 I
e caeRem4.Crem_Contig0   1862948 9 -  4500979 I

a score=104174.000000
s ce10.chrX              5006504 290 + 17718866 ACTTTTCGC----AGGCCTACTACATTTTGGACGGAGAAAACGTGGGACAATTCCAATTTTGGACACCATTAGTCCTTGCGCTGGGAAAACAACCACCATCGTTCTAT---ACTCCGTACGACTTTATAAAAGCCGT--TGTACCATATTTTCAAAACGTGTGCTACGGAG---TATTCAAATTACCGCCACTTCTCACAAAGTTTGAGCTCTCCATTTTAGCAGTTGATAACACGTATAGCATTGAGAGGGCTCGTCGCGAGTTAGGATATGAACCGGAACCCTGTGTCATGACAGATGTA
s cb4.chrX              10338347 293 + 21540570 acattttaa----aGTCGTATTACATTATGGACCAAGAAATCACTGGTCAATATGAGTTTTGGACTCCACTTGTCCATGCTCTTGGACGCACACCGCCTTCCATATTCTTAAAAAACTACAAAGTTGCCAAAGCTGT--AGT---TTATGTCCAACAACTATTCTGCTATCACGTGCTCGGATTCGCACCAATACTCACGATGTTTGAATTGGCTATTCTTGCCATGGATAATACTTATTCCATTGAAAAAGCTCGCCGTGAGCTTGGATATGAACCGGAACCAAACTCTATGGCAGAAGTA
i cb4.chrX              I 37 I 1316
s caeRem4.Crem_Contig0   1862957 288 -  4500979 --TTTTTAC----AGGCTTATTATATTATGGATGAGGAAGAAACCGGACAATATCAGTTCTGGACTCCTCTTGTGTTGGCTCTTGGAAAGACACCTCCATCAAGATTC---ATTCCCTATGAGCTTATGCGAGTAGT--AGTCCCTCATTTCGAACATTTATGCTACAGAC---TGCTGAAAACTGCACCGCTATTGACAAAGTTCGAACTCTCCATATTGGCAACTGATAACACGTATGATATAAGTCGGGCACGGAACGAACTAGGATACAAACCGGAGCCTAGTCTTATGTCGGAGGTA
i caeRem4.Crem_Contig0  I 9 I 1
s caeSp111.Scaffold409    193323 294 -   201088 ACTGTGCTCATTTAGGTTTACTACATCCTAGACGAGGAGAGTGTCGGCCAATATCAATTCTGGGAGCCACTTGTGTCGGCTCTTGGCCGAAAGCCTCCAGTTTGGTTT---TTCCCATACAAGTTATTAGAAGTCGTAACGCTTCTGATGTCGACGATT--tgttacaatt---tttttcgaaccaCTCCGTTGCTGacaaaattcgaattaaTGATTCTGGCTACCGATAACACTTATAGCATCGAAAGAGCTCGTCAAGAATTGGGTTATCAGCCGGAGCCATGTGATATGCACAATGTA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3249640 294 +  4147112 attttttcaatctagGTATATTACATAATGGATCAAGAAACCGTTGGGCAGTACGCTTTCTGGGAGCCTTTGGTATTGGCACTTGGAAGAACTCCACCGTCAAGATTC---ATTTCATACGAGCTGATGAGATTCAT--TGTTCCACACATCGAGAATGTATGCTaccttc---ttctgaaaactccaCCACTTTTAACCAAATTCGAGTTATCAATCCTTGCTACGGACAACACCTACAGCATTGAAAGAGCAAGAAGAGAGCTTGGATATGAACCCGAACCATGTGTGATGTCTGAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   414962 285 +   591668 ---------ACTTAGGTTTATTACATCCTTGATGGTCAAAATCTGGGGCAATACGAGTTTTGGGCACCTTTGGTTGTTGCTCTGGGAAGAACGCCTCCAACTACCTTT---ATTCCTTACCATTTGCTTGCCGCCTT--GGTACCATTTTATGAATTTCTTTGCTATCGAA---TACTCGGCTCGGATCCAGTTCTTTCAAAGTTTGACCTTGCTATTTTGGCAACTGATAATACTTATAGTATAGAAAGAGCCCGTCGTGAGCTGGAATACAGCCCAGCGCCTTGTCAAATGCCAGAGGTA
i caeJap4.Scaffold17934 C 0 I 1

a score=-4057.000000
s ce10.chrX              5006794 70 + 17718866 ATAAAAA---------CTAATATCATAA----------CCAAGTAAAT---GATTTTTTACAGGTTGCAAAATACTATCAAGATCTGGAAGA
s caeRem4.Crem_Contig0   1863246 68 -  4500979 GCGATAA---------TTAAGTTTATAa--------ctacagaaaaat---gaattc----aggTGGCTAAATACTACCAAAAGTTGGAAGA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold409    193617 70 -   201088 -----AA---------ATAAGTTTTGAAT----Gttcatctgaaacttttcgatttt---caggtCGCCGCTCATTACAAAAAACTGGGAA-
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3249934 77 +  4147112 -----AATAATAGTTTGTTATTTCTCAAC----ATTCTACTTGTACATTT-GATTTT----AGGTCGCGGAGTACTacaaaaatcttgaag-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   415248 70 +   591668 -----------------ATGGATTTTAATTGGAGCTCTTCAT-TACATGG-TATTTT---TAGGCAGCAGAGTACTACAAGAAGTTGAAGGA
i caeJap4.Scaffold17934 I 1 I 620
e cb4.chrX              10338640 1316 + 21540570 I

a score=-4166.000000
s ce10.chrX              5006864  92 + 17718866 GAATGAAGTAGCTACA---GCGACTACAGAATGGAAATCTGCAATTTCCATCCTCATCG------------TATTCATTTCAATTGCTT----------------TTTTATTT-----TTGTTCAATT
s caeRem4.Crem_Contig0   1863314  87 -  4500979 GCAATCAATTGTTTCA---TCTTTTACCACATGGAGG---------CTCATCGTCACCAGCATGtgcattcttttcttctccatagCTG----------------TTCTATAT--CT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    193687  90 -   201088 --GAGCAAATGCACCA---ACAGTATTCACTCGGAAG---------TTCATCTTCGcca------------tttttttggttctagcttcaat------------ttttatattccGCTTGTACAACT
i caeSp111.Scaffold409  C 0 I 2416
s caePb3.Scfld02_0       3250011 103 +  4147112 --aaGAGCTTGTTTCAAGTACAGTCGACGACTGGAAA---------CTAATTATTGCTG------------TTTTTATTGCTATTGCTGCTATACTACTTGCTTATTTTGTAT--CGTTCTAGAAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I

a score=311.000000
s ce10.chrX              5006956 2 + 17718866 TG
s caeRem4.Crem_Contig0   1863401 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3250114 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 I 12773
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I
e caeSp111.Scaffold409    193777 2416 -   201088 I

a score=635.000000
s ce10.chrX              5006958 19 + 17718866 AACTGACCATTTATGTTTT
s caeRem4.Crem_Contig0   1863403 19 -  4500979 TACCGGTCATCTAATTTTT
i caeRem4.Crem_Contig0  C 0 I 2101
e caePb3.Scfld02_0       3250116 12773 +  4147112 I
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I
e caeSp111.Scaffold409    193777 2416 -   201088 I

a score=0.000000
s ce10.chrX              5006977 2135 + 17718866  
e caePb3.Scfld02_0       3250116 12773 +  4147112 I
e caeJap4.Scaffold17934   415318  620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I
e caeSp111.Scaffold409    193777 2416 -   201088 I
e caeRem4.Crem_Contig0   1863422 2101 -  4500979 I

a score=347.000000
s ce10.chrX              5009112 11 + 17718866 ATTAAAACAGA
s caePb3.Scfld02_0       3262889 11 +  4147112 attccaaTAAA
i caePb3.Scfld02_0      I 12773 C 0
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I
e caeSp111.Scaffold409    193777 2416 -   201088 I
e caeRem4.Crem_Contig0   1863422 2101 -  4500979 I

a score=502.000000
s ce10.chrX              5009123 13 + 17718866 AGTGAGTCTGT--TG
s caeSp111.Scaffold409    196193 13 -   201088 aatgaatcaaT--TC
i caeSp111.Scaffold409  I 2416 C 0
s caePb3.Scfld02_0       3262900 15 +  4147112 ACTGAATCACTTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I
e caeRem4.Crem_Contig0   1863422 2101 -  4500979 I

a score=246.000000
s ce10.chrX              5009136 2 + 17718866 TC
s caeRem4.Crem_Contig0   1865523 2 -  4500979 TC
i caeRem4.Crem_Contig0  I 2101 C 0
s caeSp111.Scaffold409    196206 2 -   201088 TG
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3262915 2 +  4147112 TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415318 620 +   591668 I
e cb4.chrX              10338640 1316 + 21540570 I

a score=8069.000000
s ce10.chrX              5009138 53 + 17718866 -------GGTAAATTATAAGAACGTCAATC-ACTGTTAATCTTCT-ATTGCCA-CAAGGGAG-A
s cb4.chrX              10339956 49 + 21540570 -------GATCAATTGCAACATTGTCTATC-ATGGTCATTCGA---AAGATCA-CAGCAA---G
i cb4.chrX              I 1316 C 0
s caeRem4.Crem_Contig0   1865525 53 -  4500979 -------AATGCATTGCAACATTGTCAATC-ACGATCAATCTATCCAATGCCACCAGGGA---A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    196208 55 -   201088 GTTAG-------AATGCAACATTGTCAATCAAACGTAAATCTAGA-GATGCCACCAAGGCAG-A
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3262917 62 +  4147112 GTTGGTCGGTGAATTGCAACATTGTCAATC-ACCGTTAATCTAAA-GATGCCACCAAGGGAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415318 620 +   591668 I

a score=38338.000000
s ce10.chrX              5009191 56 + 17718866 ATGATAAGAGTTTGCACTTTGTGACCGGGTTTTTGGTATGGGAGGTAACACACGTT
s cb4.chrX              10340005 56 + 21540570 AAGATAAGACTTTGCACTTGGTGACCGCATTTTTGCAGTAGGAGGTTAAATGTGTT
i cb4.chrX              C 0 I 394
s caeRem4.Crem_Contig0   1865578 55 -  4500979 ATGATAAGG-GTTGCACTTTGTGACCGGGTTTTCTACGAGGGAGGTAAGATGTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    196263 56 -   201088 TTGATAAGGTTTTGCACTTTGTGACCGGGTTTTCTATACGGGAGGCTAAGTATGTT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3262979 55 +  4147112 ATGATAGCG-TTTGCACTTTGTGACCGGGTTTTCGTTACGGGAGAAGAGATGTGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   415938 55 +   591668 ATAAGAAGAACTTGCACTTTCTGACCGGGTTTTTGACGC-GGCGGTAAGACGCGTT
i caeJap4.Scaffold17934 I 620 C 0

a score=1476.000000
s ce10.chrX              5009247 2 + 17718866 TG
s caeRem4.Crem_Contig0   1865633 2 -  4500979 CG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    196319 2 -   201088 CG
i caeSp111.Scaffold409  C 0 I 368
s caePb3.Scfld02_0       3263034 2 +  4147112 CG
i caePb3.Scfld02_0      C 0 I 523
s caeJap4.Scaffold17934   415993 2 +   591668 CG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10340061 394 + 21540570 I

a score=300.000000
s ce10.chrX              5009249 1 + 17718866 C
s caeRem4.Crem_Contig0   1865635 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 I 519
s caeJap4.Scaffold17934   415995 1 +   591668 C
i caeJap4.Scaffold17934 C 0 I 300
e caePb3.Scfld02_0       3263036 523 +  4147112 I
e cb4.chrX              10340061 394 + 21540570 I
e caeSp111.Scaffold409    196321 368 -   201088 I

a score=0.000000
s ce10.chrX              5009250 129 + 17718866 GTTCCATTTCTAGGCATTATTATATTTTGTTGAGTAAAACAAGAACATTCTATTTCATTTTTACTTGAGGAACTTGACTTTGATTAACTTTCATTTGGTTTTTAAGCAACTGAAAACCTTGACTAGAAT
e caePb3.Scfld02_0       3263036 523 +  4147112 I
e caeJap4.Scaffold17934   415996 300 +   591668 I
e cb4.chrX              10340061 394 + 21540570 I
e caeSp111.Scaffold409    196321 368 -   201088 I
e caeRem4.Crem_Contig0   1865636 519 -  4500979 I

a score=693.000000
s ce10.chrX              5009379 37 + 17718866 TATTTTTCCTATTAAAACTCTACTGTTGTTAATGACC
s caeSp111.Scaffold409    196689 35 -   201088 tattttttttatcaaagttt--ctcttgaaattcatt
i caeSp111.Scaffold409  I 368 C 0
e caePb3.Scfld02_0       3263036 523 +  4147112 I
e caeJap4.Scaffold17934   415996 300 +   591668 I
e cb4.chrX              10340061 394 + 21540570 I
e caeRem4.Crem_Contig0   1865636 519 -  4500979 I

a score=-2366.000000
s ce10.chrX              5009416 68 + 17718866 TTGAA-----AATACCTTTTTTGTATTGATTTTGGTGTAATCTGCCAAGAAATATCATTCAATGTGTCCGCG--------A
s caeSp111.Scaffold409    196724 65 -   201088 tttcaactccaacttttgttttttagatGCTCATATAAGCTTGCTTACAGACTTTGAATCA----GTC------------G
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3263559 72 +  4147112 tttgg-----aattctttttttataggtaatctt----gattgttttcagcATCTGAGTCAAAATGTCCACATCTGAGGAA
i caePb3.Scfld02_0      I 523 C 0
e caeJap4.Scaffold17934   415996 300 +   591668 I
e cb4.chrX              10340061 394 + 21540570 I
e caeRem4.Crem_Contig0   1865636 519 -  4500979 I

a score=1092.000000
s ce10.chrX              5009484 2 + 17718866 AA
s caeRem4.Crem_Contig0   1866155 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 519 C 0
s caeSp111.Scaffold409    196789 2 -   201088 AA
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3263631 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415996 300 +   591668 I
e cb4.chrX              10340061 394 + 21540570 I

a score=900.000000
s ce10.chrX              5009486 7 + 17718866 TCACTAC
s cb4.chrX              10340455 7 + 21540570 TCATTAT
i cb4.chrX              I 394 C 0
s caeRem4.Crem_Contig0   1866157 7 -  4500979 GCACTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    196791 7 -   201088 ATGGCAT
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3263633 7 +  4147112 ATGTTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   415996 300 +   591668 I

a score=21845.000000
s ce10.chrX              5009493 333 + 17718866 GTTATT--ACTGGAGGAGGTGGATTCCTTGGTGCTCATCTTATAGCAGCTCTTCAGAAAAATGGGGATCGTACCAAATGCATTGTCGTTGATCCGAATCCTCGATTATCCCATTTTTCAGCT------------ATAGAC-------------TTTGATAAAAGTCTTGTGGAATATGAAAAAGTTTGA-ATTTTATTTCAAATTCTGTCATTAAT-------ACTAACA-----GTT------AAGGGCTCATTCCTTGATAGAAAAGTGCTTGAACGCGTTCTACCGAACGCTATTACAGTATTTCATCTATGTGCAATTGGGCACACCGGATGGTTTGGGGTAGAAATCATAGAATTTATAGTTTGAAAATTTA-AG--
s cb4.chrX              10340462 335 + 21540570 GTGATC--ACCGGAGGTGCTGGCTTCCTTGGCAGTCAACTCATCGCTGCTCTACaaaaaaaCGGTGATATGACACAGTGCATTGTCGTAGATCCCAGCCCACCTCATCCCTATGAT---ACC------------ATCCAG-------------TTTGATCGAGCATTTGTCACATATAAACAGGtga---gattttcggttttttttttcatttga-----aaactcaCC-----GTCTGGTTACAGGAGAAATTCCAAGAAGATCGCGTGCTTGATTCTGTTCTTCCCAACGCCTCTACAGTATTTCATCTCTGCTCGATCGGACACACCGGAAAATATGGAGT-GAGTTGTTATAAACTAAACAGTGGAATGTGA-AA--
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1866164 319 -  4500979 GTCATC--ACAGGAGGAGCTGGACTACTCGGGAGTCAACTAATATCTTCTCTCCAGAAAAACGGAGACTTCACAAAGTGTGTTGTGATTGATCCAACTCCTTATCGTCCATTCGAC---ACT------------ATCAAG-------------CTGGATACATCTTTTGTCGAATATATACAGgtta---gttcaaaaattgattctgTAAGTTAT-----ACATACAGT-----ATT------CAGGGATCATTCTTGGATGAAACGGTCTTGAACCGTGTTTTATCAAATTGCGTTACCGTATTCCATCTTTGTGCTATTGGACACACTGGAAGGTTTGGCGT-GAGTGCTCAAGAGCTAAAtat-----------aa--
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold409    196798 320 -   201088 ATTTGATTGTTGGAGGTGGAGGTTTTCTCGGAGCCAATCTCGTTGCAGCTCTGCAAGAGAACAACGATTTTACGAAACTCTTCATTCTTGATCCATGTTTCAAACTTTCCCAGTac---act-cattt--gaaaatcaatgaaagcAATATCACATGGATCAATGTTAGTTAGGTA--------------ATTTAGAAATAACTGAAATAGATTCA-------------------CTT------CAGGGATCATTTTTGGACTCTGATTTGCTGGACGAGATATTACCTGGAATAGAAACAGTGTTCCATCTCTCTTCAATCGGTCACACAGGACGTTTTGGAGT-AAGTC---ACAAACTCTGGTT-----------AA--
i caeSp111.Scaffold409  C 0 I 12
s caePb3.Scfld02_0       3263640 340 +  4147112 GTCGGG--ATTGGAGCCGGAGGCTTTTTGGGTGCCAACCTCATTGCCTCTCTCCAGGAACACGGCGACTTCACCAAGTTCATCGTTGTGGACCCGAATCCCCGCTTGTCCAGTTTC---ACT-CACCT--TAAAATTAAT-------------CTTGGTCCAGATTTCgttaaatatgaaaaagtgagt-tttgaaaaattagtggTAATGATTGGTATGTTGACGCTGT-----TTC------CAGAGCTCCTTCCTCGAGGATGAGGTTTTGGACCGAGTATTGAAGAACGCGAAGTCGGTTTTTCACCTTGCCGCTATCGGACACACTGGAAGCCATGGGGT-CAGtt------aacttcaatttttttcttaaaaa--
i caePb3.Scfld02_0      C 0 I 299
s caeJap4.Scaffold17934   416296 337 +   591668 GTGATC--ATAGGTGGTGGTGGATTCCTAGGTGCTCATCTGGTTTCTGAGCTGCAGAGAAATCTAGTCAAAAGCAAATTGATAATTATCGATCCTCATCCAAGGCTT------------ACTTCATTTGAGAAGATAGAG-------------ATTAGTGAAGAAAACATCACATATGTTAAAGTGTGTCTTTTTTAATTCCCTTATTTTTCTAAT-----CCACTCTTTTATAAATT------TAGGAATCTTTTCTAAATACTACTGTACTTGACAAATTCTTACCTGGTGCAGATGTGGTATTTCATTTATGCGCCATTGGCCACACTGGTGTTTACGGAGT-AA-----TAAATACGGTAAAATACTCTTTCA-AATA
i caeJap4.Scaffold17934 I 300 C 0

a score=40495.000000
s ce10.chrX              5009826 159 + 17718866 ATTTTAAGCTTTCAGGCCCAAAAACATCGTGAATATGTGTACGCATTCAATGTAACTGGCACAAAATTTCTGATTGAAAAGTGTAAATTTTTTGGTGTTCCAAGATTTATCTACTCTTCAAGTATTGCTGTAGTGTTTGTGGGAAAACCAATTTACAAT
s cb4.chrX              10340802 149 + 21540570 AA------CATTCAGGCTCGTTGTTATCAAGATGAAGTGTATAAAATAAATGTTGAAGGAACCAAAAATCTCATATACAAATGTCGAAAATACAAGGTTGCCAGGTTTGTCTACTCGTCGTCTGTTGCAGTAGTTTTTGTCGGGAAACCTCTGCA----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1866488 159 -  4500979 tatttttttgtttaggctcaaaaatacaaaagtcGTGCACATCAGTTCAATGTTCTTGGAACTATTCAACTAATCAAGAAATGCAAAGAAAACGGTGTACAAAGGTTCATTTATTCCAGTTCTATAGCGGTCGTATTCACCGGAAAACCATTGTATTCT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold409    197130 155 -   201088 ----ACCTATTTTAGGCATCGAAGCATCGAGATTATGTTCAATTCTTTAATGTTACCGGAACCGAACGATTGATCGAAAAATGTCGTATTCATCACGTGAAGAGGTTTATATATGCTTCGAGTATAGCTGTCTGTTTTGTTGGAAAACCGATTTATGAT
i caeSp111.Scaffold409  I 12 C 0
s caePb3.Scfld02_0       3264279 159 +  4147112 attttgttatttcagGCTCCGAGACATCACGATTATGTGAGACGCTTCAATGTAGCTGAAACGGAAAAACTACTGAAGAAATGTCGTGATCTCGGTGTCGAGAATTTTATTTATGCGTCTTCGATTGCTGTAACTTTTGTGGGAAAGCCGATTTATGAT
i caePb3.Scfld02_0      I 299 C 0
s caeJap4.Scaffold17934   416633 159 +   591668 ACTTGAAGTTTGCAgtcaagaaaattaaaagagcATGTCTACCATGTAAACGTTTTTGGGACAAAGCAACTTGtagaaaagtgcaaaaaatacAAAGTCAAACGTTTCATTTATTCGTCAAGTGTAGCAGTTGTCTTCACTGGAAAACCGATTTACAAT
i caeJap4.Scaffold17934 C 0 I 347

a score=-16561.000000
s ce10.chrX              5009985 73 + 17718866 TGTGACGAATCGGAA------CCCTACCCTTTGAAATCGGAAGTATTGATATGTGACATAAGATTTTAATTTCA--------ATCAT-----
s cb4.chrX              10340951 73 + 21540570 --CAACGTGACAGAAGAGATGCCCTACCC--------CGAAGATCATGAGGT----AATACTTCTGTGACTTTTTGTAAATGATTGT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1866647 72 -  4500979 TGTAACGAAGCTGAA------CCCTATCC--------TAAACAAAGTGAAGT------TAGTTTTTAAACTTTGTCGAGattatgtttcgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    197285 72 -   201088 TTCTCGGAATCCGACACATTAC----CGC--------CCAAAGAAGAGGTTTTC--CACAATTTTTAAACCAATTATGAAT-ATCAT-----
i caeSp111.Scaffold409  C 0 C 0
s caePb3.Scfld02_0       3264438 73 +  4147112 GCTCGTGAAGATGA-AGGTTACCCATCTC--------CAAATGAAGTGagtttc--ttaaa--attaaaCCCAttcgaaat-gcaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   416792 347 +   591668 I

a score=82431.000000
s ce10.chrX              5010058 154 + 17718866 ATTTTCAGTATCTTGATATTTACTCGTCTTCAAAAGCAGAAGCTGAAGCGTTTGTGCGGTCTCAGTCTACTATACAATTTAAAACAACTTGCTTGCGATTTCGAGCAATTTATGGCCCTCAAGATGTGACAGTTGCTGAGAAAGTTGTTGTAAG
s cb4.chrX              10341024 154 + 21540570 AATTTTAGTTTCTGGATATTTACTCTAAAACAAAAGCAGAAGCAGAAAAATTCATCATCTCCCAGTCTTGCCCGGAGTTCAAGACCACTTGCTTGAGATTCCGGGCTATATATGGCCCACAGGACTTCGTTGTTGCTGAAAAAGTGGTGGTATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1866719 154 -  4500979 aatttcagtatctGGACATCTACTCATCGACAAAAGCTGAAGCAGAATCCTTCATTCTCTCCCAATCGTGTCTCGACTTCAAAACCACTTGTTTGCGTTTTCGTGCTATCTATGGACCACAAGATGTATCCGTGGCGGAGAAAGTAGTGGTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold409    197357 154 -   201088 GTTTTCAGTATTTGGATATTTACTCTGAAACAAAAGCTGATGCAGAGAAAATTGTGAGAAACTCATCAACATTTGAGTTTCGAACAACATGTCTCAGATTTCGGGCTATATATGGACCCCAAGATGTATGTGTAGCTCAGAAAGTGGTGGTAAG
i caeSp111.Scaffold409  C 0 I 6
s caePb3.Scfld02_0       3264511 154 +  4147112 aaatttagtaTCTCGATATCTACTCTTCCACTAAAGCTGCGGCGGAAAAAATAGTGAGGGGCTTTTCAACCAGCAAATTCCGGACTACCAGCCTCAGGTTTAGGGCCATCTATGGTCCTAACGATGTGTCTGTAGCTCAAAAAGTGGTCGTATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   417139 154 +   591668 ATTTTTAGTACATTGACACATACTCTGCCACTAAAGCAGCAGCCGAATCATTCGTTTTATCCCAATCTACGCCGTTGTTCAAAACTTCGTGTCTAAGATTCAGAGCCATTTATGGCCCACAAGATGTATCAGTTGCGGAGAAAGTCGTGGTGGG
i caeJap4.Scaffold17934 I 347 C 0

a score=180.000000
s ce10.chrX              5010212 1 + 17718866 T
s cb4.chrX              10341178 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1866873 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3264665 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17934   417293 0 +   591668 C
e caeSp111.Scaffold409    197511 6 -   201088 I

a score=575.000000
s ce10.chrX              5010213 3 + 17718866 AAT
s cb4.chrX              10341179 3 + 21540570 AAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1866874 3 -  4500979 GAT
i caeRem4.Crem_Contig0  C 0 I 29
e caePb3.Scfld02_0       3264666 34 +  4147112 I
e caeJap4.Scaffold17934   417293 0 +   591668 C
e caeSp111.Scaffold409    197511 6 -   201088 I

a score=365.000000
s ce10.chrX              5010216 11 + 17718866 TTAGATGTGGC
s cb4.chrX              10341182 11 + 21540570 TTGTAAGTGAC
i cb4.chrX              C 0 I 16
e caePb3.Scfld02_0       3264666 34 +  4147112 I
e caeJap4.Scaffold17934   417293  0 +   591668 C
e caeSp111.Scaffold409    197511  6 -   201088 I
e caeRem4.Crem_Contig0   1866877 29 -  4500979 I

a score=0.000000
s ce10.chrX              5010227 397 + 17718866 GTAAGGATTTTGTTCCTCAATGAGGTGAAAATGCTTGCAAAACTTAATTGTATAGTGAAACAGTTTGATACATTAttttcaacatttttgatagaaaatcagtttttgggaatttatattgatgtgtagaaaaacacagttattttctaaaaattactttacttcctgtggagaattttaagaagtggctcaaaaactacctcaaagccgcaatatatcgaacaaTTTGCCAATTAATATTTAAGTCAGGTTATATCAAATTTTCCAAACTTCCAATGAAAATTGAAATTATTTTATAAAATACTAGATACTATTTCTATTATTTCTATGTAACCTTGCAAAAAAAGTTTTGGCACAACGATGAAAAAAGGGATTTGTTGTTAATACACCGAAAAAA
e caePb3.Scfld02_0       3264666  34 +  4147112 I
e caeJap4.Scaffold17934   417293   0 +   591668 C
e cb4.chrX              10341193  16 + 21540570 I
e caeSp111.Scaffold409    197511   6 -   201088 I
e caeRem4.Crem_Contig0   1866877  29 -  4500979 I

a score=-423.000000
s ce10.chrX              5010624 48 + 17718866 AGTAGCACATATCTCTATTGCAGGACACTGAACCGAAATTCGCTTCTC
s caeJap4.Scaffold17934   417293 32 +   591668 agaaactctttttttttttttggttcactGTA----------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3264666 34 +  4147112 I
e cb4.chrX              10341193 16 + 21540570 I
e caeSp111.Scaffold409    197511  6 -   201088 I
e caeRem4.Crem_Contig0   1866877 29 -  4500979 I

a score=-2091.000000
s ce10.chrX              5010672 27 + 17718866 CATCTTTGAAAACTAAAAAA---TCTAAAA
s caeSp111.Scaffold409    197517 29 -   201088 CAATCTcgatgaataaaaaaggttCTGAA-
i caeSp111.Scaffold409  I 6 C 0
s caeJap4.Scaffold17934   417325 14 +   591668 ----TACGTAACGTGAAT------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3264666 34 +  4147112 I
e cb4.chrX              10341193 16 + 21540570 I
e caeRem4.Crem_Contig0   1866877 29 -  4500979 I

a score=58239.000000
s ce10.chrX              5010699 157 + 17718866 TTTCAGCAAATGGTCCGTAAAAACTTGTTTATGGTCAAAAT-------ATCTCGCCATGGTCGGGAGTCTGTTTCAAACATGAGCAGTGGCGAAAACTGTGGACTTGCTCTTCATCTGGCAAATCAAGAGCTATCAAAAAAAGAGGGCTCTCATGGAGAAGTTA
s cb4.chrX              10341209 157 + 21540570 tttaagAATATGGTTggtatgaatttttttcgaatcaaaatctTGCGCAAATCGG-------ACGAGACAAGATCAAACATGAGCAGTGGCAGGAACTGTGGTCTTGCTCTCCACCTTGCAAACCAAGCTCTGATGGAAGAGGAAAAACCCCACGGAAAAGTGA
i cb4.chrX              I 16 I 8
s caeRem4.Crem_Contig0   1866906 157 -  4500979 tttcagaATATGGTGCGTAAGAATCTGTTCATGGTGAAAAT-------AAGTCGACACGATCACGAATCAATTTCCAACATGAGCAGCGCAGAGAACTGCGGACAGGCATTTCATCTGGCAAATCAAGTTCTTGCCGAACAAAACGGCCCACACGGACAGGTTA
i caeRem4.Crem_Contig0  I 29 I 34
s caeSp111.Scaffold409    197546 153 -   201088 -TTTAGGAAATGGTCCGGAGAAATTTTCTTATGTTCAAAAT-------ATCCaaagatggaagagaaaccATCTCGAACATGAGCAGCGGACAAAATTGTGGGGTGTCTATGCACCTCGCTAATCAAGCtttgatgaaa---aacgatATACATGGCCAGGTTT
i caeSp111.Scaffold409  C 0 I 8
s caePb3.Scfld02_0       3264700 154 +  4147112 TTCCAGGAAATGGTGtcgaagaactttttgatgttcaaaat-------CAGCAAAGATGGGAGAGAAACTATCAGTAATATGTCAAGCGGTAAGAATTGTGGGCTCGCGATGCATCTGGCAAATCAAGCactgatgaaa---aatgggaagaacgGCCAGGTTA
i caePb3.Scfld02_0      I 34 I 2
s caeJap4.Scaffold17934   417339 157 +   591668 TTATAGAAAATGGTGCAACTTGGTTTATTGATGGTAAGAAT-------CTCGCGCCACGGACGAGAAGCCATTTCCAACATGTCGGCCGGTGAGAATTGTGCATCAGCGTTGTACTTGGCAGACAAGGCTCTACAGAAAAAAGACGGTCCACATGGAAGAgtga
i caeJap4.Scaffold17934 C 0 C 0

a score=-9298.000000
s ce10.chrX              5010856 29 + 17718866 --------GTCAAATTTTA--------AAAGTTTTAAATGTCCAT
s cb4.chrX              10341374 24 + 21540570 --------GCCAAAATCAACAAATGCTAACAT-------------
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold409    197707 24 -   201088 --------ATCAATTTTAAGACA----AACCATT-----GT----
i caeSp111.Scaffold409  I 8 C 0
s caePb3.Scfld02_0       3264856 28 +  4147112 ---------tcaattttgtcgaa----aaaatttcgaaagt----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   417496 28 +   591668 gtactgtagaaaaccttaa--------aatattttt---------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1867063 34 -  4500979 I

a score=117890.000000
s ce10.chrX              5010885 289 + 17718866 AGATTTCAGGTGTATTTCATAACAGATGGTGAGACAGTCGGCCAGTACTCAGTTTGGTCCCCTTTAATAAAAGCTCTTGGCAAGACACCACCTCATCATTTTG--TTTCGTGTCTACTTGTTTCTACATTTGTATCGCTTTCATCGTATCTCTGCTATAAAATTTTTAACTCAAGCCCACCGATGACACGATTCGAACTAGAGGTTTTGATAACAGATAACACATATTCTATTGAAAAGGCTCGAAGAGAATTGGGATATTGTCCGGAGCAAAATCTTTTTGAAAAGGT---GA
s cb4.chrX              10341398 289 + 21540570 TTATTCCAGGCCTATTTCATCCATGATGGAGAAGAAATTCAACAATATGCCGTGTGGACACCTCTTATAAAAGCATTGGGAAAGCAACCACCAA--CATTCAGATGCCCCTATTTTCTGGTTTCCCCCTTCATCACActgatctcttttttctgtcatGAAATCTTGAAGGTCAGTCCCCCAATGACTCGATTCGAACTCGAAGTACTCGTCACCACGAACACCTATTCCATCGAAGCAGCAAAACAAGATCTGGGCTATCGACCAACAGGAAATCATTTCCAACAGgt---ac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1867097 292 -  4500979 AAGTTTCAGGCGTATTTCATCACGGACGGCGAAACTGTTGGACAGTATGAAGTATGGAGTCCTCTGATCAGAGCACTTGGCAAAACGCCACCTGTCCACTCTG--TCCCATACCCAATCGTGTCGGCTTTCGTGTCtatctcttcgtttttttgttacGAGATCTTCCATTCAAGTCCACCAATGACCCGCTTTGAGTTGGAAACCCTTGTCACGGACAACACGTATTCGATTGAAAAAGCCGAAAAGGAACTGGGATATGTTCCAggaaaaaatcacttcaaaaaagtaagaa
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold409    197731 289 -   201088 TACTTTTAGGTATATAACATAACCGACGGATTGAAAATTGGTCAATACACTGTCTGGAATGCTTTGATCTTTGCTCTCGGAAAGAGCCCACCAAAACTTTTCG--TTTCCTATGATCTGGTTTCCTTCTTTGTATCAGTGATGGGATTCATTTGCTTCGAGCTCTTCGGTTGTAGTCCACCTCTAACAAGATTCGAGCTCGAAGTACTGGTCACGGATAACACCTATTCGATAGAAAAAGCTCAGAAGGAACTCGGTTTCAATccagaaaaagataatttcaAACAGGT---AA
i caeSp111.Scaffold409  C 0 N 0
s caePb3.Scfld02_0       3264884 289 +  4147112 gttTTACAGGTTTACAACATAACTGATGGAGAAGAGATTAGACAATATTCTGTCTGGAATGGACTAATAAAGTCCCAAGGAAAGAGCCCGCCAAAACATTTTG--TCTCTTACTCCTTGGTATCAGCTTTCGTGTCTCTGTCATCCTATATATGCTACGAATGGTTCAATTCAGGACCACCGCTTACTCGATTTGAGCTAGAAGTTCTTGTCACAGACAACACATATTCAATCGAAAAGGCCAAAAAAGAGTTGAACTACAAGCCGAGGAAAGGTCACTTCCAAGaagt---aa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   417524 284 +   591668 ---aatcaGGCGTATTTCATCACTGACGGAGAGACGATTGGACAGTATACCGTATGGAACCCACTAATCAAAGCACTTGGCAAAAAACCTTCTCAAAGCTCGC--TTTCCTACTTTCTTGCATCCGCGTTTGTCACACTCTCCACATTTATTTGCTACGAGCTTCTTAACGTCGGGCCACCAATGTCACGTTTTGAATTGGAAATTCTTGTAAATGATAACACGTACTCTATCCGTCGGGCTCAAGAAGAGCTGGGTTTTCAACCGCAAAAACAGTTATTTGCAAAggt-----
i caeJap4.Scaffold17934 C 0 C 0

a score=2295.000000
s ce10.chrX              5011174 60 + 17718866 ATATTAATTCAATTTAGAAAACAAAACACACATAAA--AAAATTCCAGACTGTCGAATACTA
s cb4.chrX              10341687 53 + 21540570 ----tttttattttcagattaaaaattATGCATATT-----TTTACAGGTGGTTGATTACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1867389 53 -  4500979 ----tAACTGTTATAAtgttatagagaaaaaaaaat-----gtttcagactGTGGATTATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3265173 58 +  4147112 ----aatttcaaatgaagtgATAAAGTTCGtaaaattgcaattttcagaccgTGAGCTACTA
i caePb3.Scfld02_0      C 0 I 8266
s caeJap4.Scaffold17934   417808 52 +   591668 ---tttattttaataaagttaataataataattagt-------TTTAGACCGTCGAATATTA
i caeJap4.Scaffold17934 C 0 I 847

a score=625.000000
s ce10.chrX              5011234 10 + 17718866 TCGTCTCAAA
s cb4.chrX              10341740 10 + 21540570 TCGGGTCGAt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1867442 10 -  4500979 TCGTATTCAA
i caeRem4.Crem_Contig0  C 0 I 5092
e caePb3.Scfld02_0       3265231 8266 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I

a score=345.000000
s ce10.chrX              5011244 11 + 17718866 GCTAAACCAAA
s cb4.chrX              10341750 11 + 21540570 accaaagaaaa
i cb4.chrX              C 0 I 5680
e caePb3.Scfld02_0       3265231 8266 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I
e caeRem4.Crem_Contig0   1867452 5092 -  4500979 I

a score=0.000000
s ce10.chrX              5011255 1254 + 17718866  
e caePb3.Scfld02_0       3265231 8266 +  4147112 I
e caeJap4.Scaffold17934   417860  847 +   591668 I
e cb4.chrX              10341761 5680 + 21540570 I
e caeRem4.Crem_Contig0   1867452 5092 -  4500979 I

a score=91.000000
s ce10.chrX              5012509 1 + 17718866 A
s caeRem4.Crem_Contig0   1872544 1 -  4500979 a
i caeRem4.Crem_Contig0  I 5092 C 0
e caePb3.Scfld02_0       3265231 8266 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10341761 5680 + 21540570 I

a score=2416.000000
s ce10.chrX              5012510 14 + 17718866 AAATGTTAACGTCA
s caeRem4.Crem_Contig0   1872545 14 -  4500979 aaatcttaacGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3273497 14 +  4147112 AAATCTGCGCGTCA
i caePb3.Scfld02_0      I 8266 C 0
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10341761 5680 + 21540570 I

a score=50354.000000
s ce10.chrX              5012524 198 + 17718866 ACAAGTGTTGAATAATTTGTCATAAATTGTGATGTTGGCATGGAGAG--CAGTATGAAATGAGTTTTTAA------GAGTCGCTGCTTCGACATTCCGC---CAGAAAATGACTGCGTTTCATCGCCACTCC---CGAATAAATGGAAAACTATTCGTCAC----GGCGCCGTTTTCTATGGGTTT-CACTTCATTTTCTTAGCCAAAGTTCATTGT
s cb4.chrX              10347441 195 + 21540570 ACGAGTGTTGAATAATTTGTTATATATTGTGGTGTTGGCATGGAGAGGCCAAATGAGTTTGCCTTCCTCA--------------GCTTAAAAATTCATGCGCCGAAAAATGACTGCATTCTAAGTTCATTTCTTCCGAATAGATTGGGAACCATGTGTCACCAGAAG---TGTTTTCTCtagatttatttttcattgttctGATC-TAATTCA----
i cb4.chrX              I 5680 C 0
s caeRem4.Crem_Contig0   1872559 200 -  4500979 ACAAGTGCTGAATAATTTGTCATATATTGTGATGTTGGCATGGAGAGAAAGAATTGGAATGAGTTTCCGA--AAAGGGCT--GTGCTTAGACATTCAGG---CAGAAAATGGCTGCATTTCATCGTCACTCCG--CGAATAAATGGAAAACTATTCGTCAC----GG---CCTTTTCGATGGGTTT-cacttcattttctcaacCAGAATTCATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3273511 204 +  4147112 ACAAGTGTTGAATTATTTCGTGTATATTGTGATGTTGGCATGGAGAG--TGGAATGGAATGAGTTTCTCCGCGAAAGACTCACTGCTTAGACATTCAGG---CAGAAAATGGCTGCATTTCATCGTCACTCCGCCCGAATAAATGGAAAACTATTCGTCAC----GG---CCTTTTCGATGGgttt-cacttcattttctcaGCCGAAATTCATTGT
i caePb3.Scfld02_0      C 0 I 991
e caeJap4.Scaffold17934   417860 847 +   591668 I

a score=-727.000000
s ce10.chrX              5012722  7 + 17718866 GT-----------CAGTT
s cb4.chrX              10347636 12 + 21540570 ------AACAAGACAGTT
i cb4.chrX              C 0 I 1719
s caeRem4.Crem_Contig0   1872759 18 -  4500979 ATTCTCAACGACAAAACT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3273715 991 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I

a score=-2456.000000
s ce10.chrX              5012729 486 + 17718866  
s caeRem4.Crem_Contig0   1872777 505 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 87
e caePb3.Scfld02_0       3273715 991 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10347648 1719 + 21540570 I

a score=0.000000
s ce10.chrX              5013215 97 + 17718866 TAGAATTCGTCAAAGTGGATGTGTCAGTTCGAGAAGTTTGAAACTGCCCACATTCGGAACCCTTAAAGCAAATACAAACGTTATAAGCTTCATAGCT
e caePb3.Scfld02_0       3273715 991 +  4147112 I
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10347648 1719 + 21540570 I
e caeRem4.Crem_Contig0   1873282 87 -  4500979 I

a score=68.000000
s ce10.chrX              5013312 3 + 17718866 AGA
s caePb3.Scfld02_0       3274706 3 +  4147112 AGT
i caePb3.Scfld02_0      I 991 C 0
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10347648 1719 + 21540570 I
e caeRem4.Crem_Contig0   1873282 87 -  4500979 I

a score=1746.000000
s ce10.chrX              5013315 28 + 17718866 TAACCTTA-CCCAACAACTTGTTCCACGC-
s caeRem4.Crem_Contig0   1873369 29 -  4500979 tCACCTTT-TCTATCAACTAGTTCAAATGG
i caeRem4.Crem_Contig0  I 87 C 0
s caePb3.Scfld02_0       3274709 29 +  4147112 TAACCTTTCCCTCTCAACTTGTTCAATTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   417860 847 +   591668 I
e cb4.chrX              10347648 1719 + 21540570 I

a score=8972.000000
s ce10.chrX              5013343 19 + 17718866 TTGAAACTAATTCGATAGA
s cb4.chrX              10349367 19 + 21540570 TTGATACTAATTTGATAGA
i cb4.chrX              I 1719 C 0
s caeRem4.Crem_Contig0   1873398 19 -  4500979 TTGAGACTAATTTGATAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3274738 19 +  4147112 TTGAGACTAATTTAATAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   417860 847 +   591668 I

a score=59652.000000
s ce10.chrX              5013362 486 + 17718866  
s cb4.chrX              10349386 658 + 21540570  
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0   1873417 574 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 71
s caePb3.Scfld02_0       3274757 599 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   418707 396 +   591668  
i caeJap4.Scaffold17934 I 847 C 0

a score=-1141.000000
s ce10.chrX              5013848 26 + 17718866 TTCTAGTTCTGACTGGGTT---TACCAAA
s cb4.chrX              10350099 24 + 21540570 TTCTCATTCTTG--TGGAT---GATTAAG
i cb4.chrX              I 55 I 14
s caePb3.Scfld02_0       3275361 24 +  4147112 atttcgaTATGA--AAACT---GATCAAT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   419103 26 +   591668 -ttttattcttg--aatttctcttttaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1873991 71 -  4500979 I

a score=-15349.000000
s ce10.chrX              5013874 171 + 17718866 AAAAA-----AAAATTGACAA------TTAAAAA----------------------------------------------------------------TGCCA-------------ATCG-TTAT------------------------------------------------CTTCCAATTCCAC-----AAATTCTGAGT-TTTAGAGCAGAATTCTGATAG----AACCAAACACATGAACT--TTTTTATCAGTCCACCCA--------TCTACCGCACGTA-TCGATACCAC--TGTTGACA-TTTTTGCCATATATTGTC---------------TTCTTT
s cb4.chrX              10350137 209 + 21540570 aaaagttagaaaaatcgattt------ttgatga---atatTTG---------------CCATATTTGTGGt--------------------------tgtcaaaaaagaaagtttgtCAACTAT------------------------------------------------TGTCTTCTGCCAC-------ATTCTCAGT-TTCGGAGCAGACC------------AAGTCAACACATGAACT--TT-TTATCAGCCCTTTTCGCTTTCTATCTACCTCACATAGTTGATAGCAT--TGTTGACATTTTTCGTtatatattcat---------------tttttg
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1874062 223 -  4500979 aaaag-----aGAATCGATTC------TCACTGA--TATAATTGGAATTAACCTCA---ccacattttttctctatattt--------ACTTCACCTCTGTCA------TATGcttatca--tat------------------------------------------------ttttctctttttc-------attctcagt-TTCAGAGCAGACTTTT-GCTA----AAACTGTTGCTTGAACT--TTCCTATCAGTCACTT----------TCTACCGCACATA-TTGATACCAC--TGTTGACA-CTTTCACTatatatactt---------------tttttt
i caeRem4.Crem_Contig0  I 71 C 0
s caePb3.Scfld02_0       3275385 296 +  4147112 GAGAT-----GAAATCAGTTCcatttttcgttcatttctACATTGAAAAAGCGTCAGTGCGAAATAGGACGTGTATAATTATCCGACCActtttccttaccta------taatcttatca--tattcttcatttcccttcttttttcctttcaatttctttcaatttcctttattttttcttcttcttttcgttttttcagt-ttcagagcAGACGTTTGGCCAAACCAAGCCAACACGTGAACT--TTTTTATCAG----------------TCCCCATCACGCT-TTGATACCAC--TGTTTACC-TTCTCGCAAtatattgtc---------------tttttt
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold17934   419129 151 +   591668 -------------------------------------------------------------------------------------------------------aaaatcaaatttttttc--tct------------------------------------------------ttttttcctccAT-----GTTTGCTCCTTGTCCCGAAAAGAGC------------AAGTCAA----TGAACTTATTTTTATCAA----------------TCATCATTA-----TTGATACCACCGTGTTTGCA-TTTGCTCTATCTACTGTCATGCCACATTCAATGttgttt
i caeJap4.Scaffold17934 C 0 C 0

a score=-3566.000000
s ce10.chrX              5014045 21 + 17718866 C----AGTCTGACCTGCCTATTTCA
s cb4.chrX              10350346 17 + 21540570 a--------agaatttttggtttca
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   1874285 22 -  4500979 ct---tttttaacttttttatttca
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold17934   419280 23 +   591668 -cagttttttcagatacttgttct-
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3275681 27 +  4147112 I

a score=10164.000000
s ce10.chrX              5014066 60 + 17718866 ACTTTTCCCCT---ATCCCCA--AATAATGCAGAGTCTATCGTCTATGTTGTCTCCGGTAAGttt
s cb4.chrX              10350372 60 + 21540570 AAACACTTGGTAAAACTTGCA--GGAAATGCAAAGCCTTTCTTCAATGCTCTCACCGGTAAG---
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1874314 60 -  4500979 ATAGTTCCAATCCTAGTTGCT--CACAATGCAAAGTCTTTCTTCAATGTTGTCTCCGGTATA---
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0       3275708 59 +  4147112 ACATTCCTTGT----GTTTCT--CAAAATGCAAAGCCTCGCTTCGATGCTGTCACCGGTaagtgt
i caePb3.Scfld02_0      I 27 C 0
s caeJap4.Scaffold17934   419303 62 +   591668 ---tttttttttgcgtctcCAGCCATCATGCAGAGTATTTCTGTCATGCTATCTCCGGTTAGTTT
i caeJap4.Scaffold17934 C 0 I 1059

a score=-10489.000000
s ce10.chrX              5014126 213 + 17718866 attttt-------------ttgaaaatta---aatt---aaataattGATATACT--------TTCAGTTAAACACAAATAATACCGTT---TACTCTGATGATGTAAGGCCCAGGAGC--------CAGGAAACAACCAGCACAAACTTTCAAACACCTTTGACCATTACAATTCCTCCAATTGAGTATGATATTCCAGCATGCCAGGT---AAAATCTT----------------------------TCATTTTT---------GAAATTAAAATTTT--------------------------------CT---------T-----------CAAGT-------TTG
s cb4.chrX              10350432 246 + 21540570 -------------------TTGAAAAGCG---ACTCTGGGATtattaaacaattttcaattcattcaGCTCAACGGAAACGATGCCAAC---------AACGGC-----------CAAC--------AAGGAGA--ATC--TGCAAACTTGCAAACGCCACTTAGCATCTCGATTCCACTTAATGAGTATGAGGTTCCAGGACTTCAGGTagcaaaatttt-----------acaaaacttttactttttttattctattGAACACAAGACCAAACCTCG-------------TTTTCAGCACG--------CTGCCGAAGATT-----------CATTT-------CTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1874374 276 -  4500979 -------------------TTTCAAAACActtatttcgttttcatccGACACTGT--------TTCAGCTCAAGTCAAGTCCTTCCAGCTCTGTTTCTACTGAT-----------CAAC--------AAGGAAA-------CATGAACTTCCAAACACCTCTAAGCATCACTATTCCACCAAATGACTACGAGATGGCTGGAATTCGGGT-----GATTTTGTGTCTTAGTGGCTAAGTTGTTATAAGTTGTTTTCT---------GATAACATAACTAGgcggaaataattttttttgaaacaataaatacCTTTCAGCAATTCGCCAATGACCCATGT-------CAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3275767 258 +  4147112 ttttcttgttttcaccTATTTTTATGTGGGTGTTTTTGTATCTGATTAATATTATT-------TGCAGCTGAACACCAGCAGTTCTGTC---------AGTGAC----------TCAACCATGACGGGAAGAAA-------TAACGACCTCCAGACTCCACTTAGCATCACTATCCCCCCAAATGATTATGAGATGGCCGGTACCCAGGt-----gatctt---------------tgttttcttttattgatttct--tgaaCAGCTTTCCAAATCTGG--------------------AACGGGGAATGACTATC------T-----------CATCTTGCAGAACAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   419365 1059 +   591668 I

a score=28705.000000
s ce10.chrX              5014339 204 + 17718866 AAAAAATATCCCAA---ATTC--TGGCCTGCT----CAA-AAAATTT-----------------------------------TTATTTCAGTTCAACCAACAACCACTTCTAACTTCCAAAAGCCCGGAACTTGATGCACTAGTGAAACTAAACAAAGAAATAGGAAATCAGTACACCTATCAAATGTTTGATGTTGAAAAAGCAAGCAATAGTAACC---ATCATCTTGGTTTCCAGAATGATCCGTAAGT
s cb4.chrX              10350678 244 + 21540570 GGAAATCAGGTCAATCCAATC--TGGccaattactgtaa-aaaattggaaatactACATAAGTTTACTAAAACT--AATGCATGATTTCAGTACCAACAACAACCACTTCTTCGTTCCAAGAGTCCAGAGATGGACGCATTGGCAGAATTAAACGCCGAAGTTGGAAATCAGTATACGTATCAAATGTTCGACTCGGAAGGAGCCAGCAACAGCGGCT---ATCATTTTGGAATGGAATCTGATCCGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1874650 235 -  4500979 GGGGATCAATCCAACTCGATG--TGGCCGATTACGGTAT-AAGATTG----TATTATATATcatgtttcaaa-------gtttcatttcAGTATAATCAACAACCATTGTTGGCTTCAAAGGATCCGAGCATGGATGCATTGGCTACATTGAATGCCGGACTAGGAAACCAATACACTTATCAGATGTTCGACGCGGAGCAGGCCGGCCATAGTCAGC---AGCAAAACGTCTTCCAAAACGATCCGTGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3276025 231 +  4147112 GGGAAACAA-TCATTACAACGGATGGGGAATCCAGGTAACAAGATCA----taatacattttattttgtaatATTCAATGTTT-ATTTTAGTACACCCAACAACCGCTCTTGGCGTCAAAGAGCCCGGAGATGGATGCTCTCGAGAAGCTCAACGCTGAAGTCGGAAACAAGTACGCCTATCAGTTCTTT------GAAGGAGCCAGCAGCAGC---------CAGTTCGGGCTCCACAACGATCCGTGAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   420424 205 +   591668 -------------------------------------aa-aaaatct-------cACAGATCAAGACAGAAATC--AACGCTTCATTTAAGCCCAATCAGCAACCATTGCTCACCTCCAAATCCTCGGAGGAAGACAATCTAACAAGACTGAGCATGGCAATAGGAAACAACTATACGTGTCAGTTGCGAAATATGGAATTAGGAAACTATGGATGCTATAATCAACAAATCGTCAGTAAAGATCCGtaagt
i caeJap4.Scaffold17934 I 1059 I 2371

a score=273.000000
s ce10.chrX              5014543 1 + 17718866 T
s cb4.chrX              10350922 1 + 21540570 T
i cb4.chrX              C 0 I 780
s caeRem4.Crem_Contig0   1874885 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3276256 0 +  4147112 C
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-6681.000000
s ce10.chrX              5014544 119 + 17718866 CAGTAAAATTAGCTATCGTTTGGCATGGCTGCCCACACAGATTAACTTTCACATGATCTTTTTA--------TAGTTGAAATTTTTTTAGCG-----CTTGTTATGATATTCGGTCATGTTGGATGAGTGTA
s caeRem4.Crem_Contig0   1874886  58 -  4500979 --------------------------------------------GTTTTCgtttcataattttaagtATTAGGTGGTAAACTCATTTTAGCT-----TTTGTTTTAA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3276256  79 +  4147112 ---------------------------------------------------CACCAAATTATAGAgaataatgaacaaaaaatatttttatcacATGGTTGTTTCAATCGCT--TCCTGGTGGATAAAAGTG
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e cb4.chrX              10350923 780 + 21540570 I

a score=-1449.000000
s ce10.chrX              5014663 82 + 17718866 TTCACATTAAACTTCATTCCCATTATTTGTATACGACCAGGAGCTTTTCGAATTTATTTTAAAAGTTCGTTTTTTTGAGCAT
s caeRem4.Crem_Contig0   1874944 21 -  4500979 -----------------------------------------AGCTTatcaaaa--------------ccttttttt------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3276335 41 +  4147112 I
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e cb4.chrX              10350923 780 + 21540570 I

a score=-7128.000000
s ce10.chrX              5014745 165 + 17718866 TTGGAAATTT---GTCAAACTTTGACTGAAATGTTTTAAAACTCTAAAAGTTTAGACTCCAAACGAAACATTTTATAGTTAGCCTGACAATTTTATAAGCAACTGAAAGTAGAAAACATTGTGTCATTTATTTTCCCCAGAAATAAAATATTTCCTTCAAAACTACAG---------------------
s caeRem4.Crem_Contig0   1874965  73 -  4500979 ttagaaattt---atcaaaat---------------------------------------------------------------tggTTACTTTAT-----TTTGAGAacagataactttttcttgt-------------aaacatattatttcatt--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3276376 105 +  4147112 TTAGAAGCTTCAAACGACAAT---------------------------------------------------------------------CTCTATA--CGTTAAAAAACCGAACACGATATCTAGC-------------AATCATaatttatgaatgaaaaatttgacaaaaaagatgtggaggacaa
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e cb4.chrX              10350923 780 + 21540570 I

a score=61144.000000
s ce10.chrX              5014910 250 + 17718866 AATTTTTCTTAATTTTCATTTTTCAGCCGAATGGCATATGACAAGATCATCTACACTTCAACCAACAAGCTCGGCTGCAACGATTTCTATTACCAATGTGCATACGGAGAACCTAAAACCGACAGGATGGCCATCCGTCACAAGCTCGACAACGAC------GACATTGAGCCAGCAGCAAAACGTCATTGTGCCGGCGAATTAGACTACTCAAGATTTGGAAATGAGCGTAGTGTGGTTGTGCAAAATACGAATG
s cb4.chrX              10351703 246 + 21540570 -AGTTATTTATACTATTCATTTCTAGACGCACCGGCTACGACAAGCACATGTTCGCTGCCGTCGACCCGGCCCCATACCAAGATCGCTATTACCAATGCGCGTATGGACAATCGAAAAGCCAGCGAGTGGCAATCCGTCACAAGCTCGACGACAAAGACCAGGACGGCGGTCCGGACACGAAACGTCATTGTGTCGAGG---------CGCCGAGATTGGGAAATGAGTACAGCGTCATCGTGCCGAACACAAGCG
i cb4.chrX              I 780 C 0
s caeRem4.Crem_Contig0   1875038 223 -  4500979 ---------------------ttcaggcgAATAGGATATGACAAGATTGTCTATGCATCTGCAAATGTCCTTCCATACAAGGATCTCTATTACCAATGTGCATACGGAGAACCCAAAACCGAGAGGATGGCCATCCGTCACAAGCTGGACGACGAC------GACGCCGGACCGGAGGCGAAACGTCAATGTGTAGGGGAA------CCGCCAAGATTTGGAAATGAGCGAAGCGTAATTGTTCAGAACACCAGCG
i caeRem4.Crem_Contig0  C 0 I 53
s caePb3.Scfld02_0       3276481 228 +  4147112 -------------tatttttttttagacgAATGGGATACGACAAGATTATCTACACAGCCGCGAATCCTCTTCCATTTAAGGATCTCTATTACCAATGTGCATACGGACAACCCAAACCCGACAGAATGGCCATCCGTCACAAGCTCGACGACGAC------GACGCTGGGCCAGATGCGAAACGTCATTGCGTCGGAG---------AGTCGAGATTTGGGAATGAGCACAGCGTAATTGTGCCAAATACCAACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-1621.000000
s ce10.chrX              5015160 56 + 17718866 CAATTGTGCA----TCAAGAATTATGGAAGGATAATTGATATGGAACATAACATTT------TGAA-
s cb4.chrX              10351949 44 + 21540570 TTTTTGGGAACGGAGCCAATA------AAGGATAATT----------ATAGCCTTT------TCTA-
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       3276709 57 +  4147112 TCATTGGGAACGGTTCGAACACCCAGGAGGGATAAGA----------ATTGTTTTTCGCACCTCTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e caeRem4.Crem_Contig0   1875261 53 -  4500979 I

a score=49008.000000
s ce10.chrX              5015216 656 + 17718866  
s cb4.chrX              10351998 734 + 21540570  
i cb4.chrX              I 5 I 24
s caeRem4.Crem_Contig0   1875314 661 -  4500979  
i caeRem4.Crem_Contig0  I 53 C 0
s caePb3.Scfld02_0       3276766 710 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-2623.000000
s ce10.chrX              5015872 58 + 17718866 GACATAAGA---------------TAATATGAACAGATTTTT-------TTTAGTTTCTAATAAAGTGGAATGGGAGGGG
s caeRem4.Crem_Contig0   1875975 53 -  4500979 ------------------------tggTGAAAGCAGTTTTCTCTCCTGGT---GCCCCAAATAAGAAAggctaaaaagaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3277476 77 +  4147112 --CATAAactgatttccaattttttggtaaaGGCCCTTTTTCGCATTCGTCCATCCTTTAAAAAGAGAGGATTGAgcgg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e cb4.chrX              10352732 24 + 21540570 I

a score=38400.000000
s ce10.chrX              5015930 164 + 17718866 AAGAAAAACTAATTTGGTGCTAGATTTATAATGAGAA-TTTTCGTTCTTTTT----------GTGCGCCCAACA-------------------TTCTGCTCATGGAGCAAAAAA----------ACTTTTCAATTTCCTTATTTTTTATTCAGAAGTGCTCACAAAGTTC-----GTAACGTTCTCCCTC-CCGCCCA--AAAGTTCTTATT
s cb4.chrX              10352756 176 + 21540570 aaaaaaaactaatttagTGCTAGATTTATAATGAGAA-TTTCTTCCACTTCTTCCATCTCTATTGCCCTAACCACGACCTCTTGG-----------TGCTCACT----aaaaaaaGGAACCCTTCCCTCTCAATTTCCTCATTTCTCATTCAGAACCGCTCCACA-------TCGGC-CCGTCCTTCTCT------------ATTCCCAAGC
i cb4.chrX              I 24 I 9
s caeRem4.Crem_Contig0   1876028 181 -  4500979 aaaaaaaactaatttggTGTTAGATTTATAATGAGaa-ttttcgttcttttt----------ttgccCTTACCACGACCTGCTCG--CCGCTCTCTTGCTCACa----aaaaaa----------CCTTCTCAATTTCCTCATTTCTCATTCAGAAAGGCTCCACAAGTTCTTTCGACAACGTTCTCCTCT--CAATTG--AAAGTTCCAATT
i caeRem4.Crem_Contig0  C 0 I 54
s caePb3.Scfld02_0       3277553 183 +  4147112 -aaaaaaactaatttggtGCTAGATTTATAATGAGAATTTTTCGTTCTCTCT----------TTGCCCTTACCG----CTCTTGGCGCGGCTCTCTTGCTCACa----aaaaaa----------ccttctcaatttcctcatTTCTCATTCAGAAGTGCTCCACGAGTTCTTTCGACAGCGTTCTCCCTTTCCGCTCGCCAGAGTTCCTATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-4410.000000
s ce10.chrX              5016094 52 + 17718866 --------------------CCGAC------------ATGCCTCATGAGGTGAGTGTTTTTTTTGTTACCGGATCTAAGAGATT--------------
s cb4.chrX              10352941 39 + 21540570 ----CTA--AGCCCtcaacttcttc-------aaaaaatgtcgcAAGAGGTA----------------------------------------------
i cb4.chrX              I 9 I 1
s caePb3.Scfld02_0       3277736 98 +  4147112 TCATCTACCAACTTTATACTTCTACGCCAACAAAACAATGCCACAAGAGGTGAGAGATAACTTTATGAAGAAACTCAGGCTATCTTctctcacaattt
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e caeRem4.Crem_Contig0   1876209 54 -  4500979 I

a score=10076.000000
s ce10.chrX              5016146  88 + 17718866 ------GAAGCAAAGAC---------------AATTTGTTCAATA-TTG------------TTTTTTAGACA----AAGAAGAACAGTTTGAAAAGAAACTATCCGGATA---GAGATGATGGTTGGTT
s cb4.chrX              10352981  97 + 21540570 ------Gaacaaagatt--------ttgaa--attagttTACATGTTCG------------GTTTTCAGAAC----AAGTCAAACAACTTGAAACGAGGCTACCCAGAGGCAAAGGACGGAGGTTTGTT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1876263 100 -  4500979 ------GAAGAAAAGTTTATGGGTGTTAAC--AATA-TTTCCGTG-acg------------tttttcagaac----aaatcGAACAGTTTGAAGAGAAGCTACCCGGAGG---AGAACGATGGTTTGTT
i caeRem4.Crem_Contig0  I 54 C 0
s caePb3.Scfld02_0       3277840 117 +  4147112 gtattgcagaaaaagtt--------ttcaattattattttctgtt-aCGAAAAGAATGCAATCTTTCCAGACAACAAAATCGAACAGCTTGAAACGAAGCTACCCAGGAG---GGGAAGACGGTATGTT
i caePb3.Scfld02_0      I 6 I 250
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-1842.000000
s ce10.chrX              5016234 35 + 17718866 ------GCTTTGT---TATCTGTGAGAAAGTGTGACAATAAAGA
s cb4.chrX              10353078 36 + 21540570 TGCATAGCTTTTCGTGTTTCTTTCTCATGAAGTCAT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1876363 37 -  4500979 TACAAAGCTTcacatatttcttttttaatcgTTTAT-------A
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3277957 250 +  4147112 I
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=12576.000000
s ce10.chrX              5016269 79 + 17718866 TTACAGATCAGCTTCACAAAGAGACCGAGGGAGTTTTGACGAATGTCGTTTCGATTCTCAAAACTCAAGAAAACCAAGA
s cb4.chrX              10353114 73 + 21540570 TTTTAGAACAAGAAGACAAGGAGACTCATGAGGTCATCACCGACGTCATCTCGATTCT------TCGCAATCAGGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1876400 79 -  4500979 TTTCAGAACCACACCAACAGGAGACCAGTGGAACCCTCACTAACGTCGCTTCCATCCTCAGATCCCAAGAGCAACAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3278207 79 +  4147112 tttcagaccACCTCCGGAAAGAGACTGATGGGGTACTCTCCAACGTGATTTCTATCCTCAAATCACATGAAAAACAGGA
i caePb3.Scfld02_0      I 250 I 55
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=-722.000000
s ce10.chrX              5016348 2 + 17718866 TG
s cb4.chrX              10353187 1 + 21540570 C-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1876479 2 -  4500979 CG
i caeRem4.Crem_Contig0  C 0 I 70
e caePb3.Scfld02_0       3278286 55 +  4147112 I
e caeJap4.Scaffold17934   420629 2371 +   591668 I

a score=868.000000
s ce10.chrX              5016350 41 + 17718866 TGGCACCAAGCTTCACAGACCAGTCGACGGTGGTTAAGGTA
s cb4.chrX              10353188 36 + 21540570 -----TCTGGGTTTGCAGTTCCACTGCCAGTGGTAAAGGTA
i cb4.chrX              C 0 I 292
e caePb3.Scfld02_0       3278286 55 +  4147112 I
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e caeRem4.Crem_Contig0   1876481 70 -  4500979 I

a score=0.000000
s ce10.chrX              5016391 1049 + 17718866  
e caePb3.Scfld02_0       3278286   55 +  4147112 I
e caeJap4.Scaffold17934   420629 2371 +   591668 I
e cb4.chrX              10353224  292 + 21540570 I
e caeRem4.Crem_Contig0   1876481   70 -  4500979 I

a score=314.000000
s ce10.chrX              5017440 9 + 17718866 GCAAGTCAT
s caeJap4.Scaffold17934   423000 9 +   591668 GCAGGTAAg
i caeJap4.Scaffold17934 I 2371 C 0
e caePb3.Scfld02_0       3278286 55 +  4147112 I
e cb4.chrX              10353224 292 + 21540570 I
e caeRem4.Crem_Contig0   1876481 70 -  4500979 I

a score=963.000000
s ce10.chrX              5017449 22 + 17718866 ACTAATAAAAGAACAATCGTAA
s caePb3.Scfld02_0       3278341 22 +  4147112 acaaatcaaagaaaagaagtca
i caePb3.Scfld02_0      I 55 I 4
s caeJap4.Scaffold17934   423009 22 +   591668 aataattaatttaaaacagaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10353224 292 + 21540570 I
e caeRem4.Crem_Contig0   1876481 70 -  4500979 I

a score=27098.000000
s ce10.chrX              5017471 66 + 17718866 -TTTCAATTTCAGGGGTCCATTCCGCCACCAAATACTCCGTGCACTAAAGACTAGTATCAAAAGTAC
s cb4.chrX              10353516 57 + 21540570 -tttgaatttcagggaTCCGTTCCACCACCAAACACTCCATGTTCCAAGGATTAA---------TAC
i cb4.chrX              I 292 C 0
s caeRem4.Crem_Contig0   1876551 60 -  4500979 -TCTGAATTCCAGGGTTTCATTCCACCACCAAACACTCCATGCTCCGAAGACTAAA------AGTGC
i caeRem4.Crem_Contig0  I 70 C 0
s caePb3.Scfld02_0       3278367 61 +  4147112 -ATATAATTCCAGGGATCCGTTCCACCACCAAACACTCCATGTGCCAAAGACTAGG-----TAGTTC
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   423031 67 +   591668 tttacaattttaggGGCTTGTTCCGCCGCCAAATACACCTTGCACAAAAGACTGATGAAATAAATAC
i caeJap4.Scaffold17934 C 0 I 1455

a score=-2950.000000
s ce10.chrX              5017537 127 + 17718866 AAACCACCAGTGTCATTCAATTGCCA------AAACAATAAGGAAGAAAAAAAAATGCATTGTCG---AGTGTTTCAACACTG-TTCCCTGATATAA--AATTCAATTGC--CTTTCAAAAGTGTTCCATTATTTTACAAT------
s cb4.chrX              10353573 107 + 21540570 GC--------TGtcaatcaacttttt------------tgaagaaggaAGTGTGATGAATTGTCA---agtgtttcaattttc-ccatttttcatat--tttttccttgcatttttttctaatt--------tttttcctt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1876611 119 -  4500979 AC-------GTGTCAATCATCGCCAT------ACATGATGAGGAAGAAAG---AATAgagtttca---------tcatttttcttcattataAATGTTATTCTTACTCGCCGCTTCTAACAATTATACTAAATTATTGCACAAT---
i caeRem4.Crem_Contig0  C 0 I 82
s caePb3.Scfld02_0       3278428 131 +  4147112 AA-------ATGTCAAtcaacaccaacaaaaaaagttatgaggaAGGAAA---AATGCATTGTTGAGGAgtgtttcatcattt-tcacttgataaa---ttttcaattgc--cTTTCTCCAATTTGCGTCTATTTCTGTCTTTTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   423098 1455 +   591668 I

a score=-3847.000000
s ce10.chrX              5017664 79 + 17718866 TTCATAATAATTGT---CCAATTTCTTACTATTTCATATTCACTGCTAAATTATATTTTCATATTTTAT-TATGCTTTATACA---------------------
s cb4.chrX              10353680 95 + 21540570 ttcccgaaaatttgaatcaaattGCTT----TTTCTTAATCA--TCTGA--T-TGGTCCCATTCAAAACAATTTGTCTGTACTTGAGCACACATAAGCTGTAAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3278559 70 +  4147112 TCCCCCAcaa-------caaaattctgaa-atttctgaat----tctgaatt-agttttcatttaatatgtattttttgtata---------------------
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold17934   423098 1455 +   591668 I
e caeRem4.Crem_Contig0   1876730 82 -  4500979 I

a score=-607.000000
s ce10.chrX              5017743 19 + 17718866 AAAATTTGGTTTTTGCTCT
s cb4.chrX              10353775  3 + 21540570 AAA----------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3278629 67 +  4147112 I
e caeJap4.Scaffold17934   423098 1455 +   591668 I
e caeRem4.Crem_Contig0   1876730 82 -  4500979 I

a score=-1448.000000
s ce10.chrX              5017762 32 + 17718866 TCTATTTGGTAAAGGGTAGATTTTTTCTTTAT---
s cb4.chrX              10353778 33 + 21540570 --TAAttaattgaaataaaaattcttacatattca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1876812 31 -  4500979 ----TCGAGTCAGCAAAAGAATCTTTGTTTTCGGG
i caeRem4.Crem_Contig0  I 82 C 0
e caePb3.Scfld02_0       3278629 67 +  4147112 I
e caeJap4.Scaffold17934   423098 1455 +   591668 I

a score=11503.000000
s ce10.chrX              5017794 261 + 17718866 TTTTGTTTTTCAGTTACT---CTCAATAAAAGAAATAG-------AGGCGGTCGGTGCGCTC-TCCGACGGTTTTCTCTCGAAGCTATTTGT------------TCTCTCCGCACTTACCAAATTTCT----GTAGCATCT--------CTAGTCAT-GGCTAGATGAAAAAATTGCCTGA--------ACTTTCCGGTGTACAATATTCAATATTTTA--ATAATTTTCCTAAAATTATGGATCCGCCAAAAAAACGAAAGTAAGTT---------TTTTCAACCACACGCCAAATAGATTAAAACTTAAAAATT------------
s cb4.chrX              10353811 273 + 21540570 ---ttttttttct-aatt---ttccagtcGAACAATTCCCTCCAAGTCTCATGTGTCTCCTCACCCAGCATCTTT---------TTGTTTGTTCTCGTTTTCCCTCTCTCGTCGGTTGGTAAATGCAGGAGAAAAGAGTTTTTTCAAGGTTAGTCATGGGCTAGGTGAAACAGTTGAATTACCCTACTcatttttc----------actcattttgtttcgttttgttttcCAAAGTCATGGA---GCGAAGAAAGAGAAAGTAggtt-----attgtttt---------tttgtggagtttcttttttgaaaatt------------
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig0   1876843 258 -  4500979 ---TGTTGTTTCA-GAATAAATTCAAGCGAAAATACGGCGTGTGAGGGTCACATGTGCGCTC-TCCAACATCTTTCGA-AAACGTTATTTGT------------TCTTTCGGCGGTTAGCAAATGTAT----AGAGCGTCTTCCCAAGGTTAGTCAT--GCTAGGTAAAACAGTTAACTGA--------acttttc----------attaatttttctattctatttttgcGGTAACTATGGA---GTCGAGAAAGCGAAagtatgtttaaaaaaagtttg---------gataTATAG---ATATTCAGAAAGT-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3278696 253 +  4147112 ttttgtttttcca--------gtcAAGTGCGAATGCGGCATTCT-GGGTCACATGTGCGCTC-TCCAACATCTTTCCC-AATCGTTATTTGT------------TCTTTCCGCGGTTAGCAAATGTAT----TGAGCGTCTTTTCAAGGTTAGTCAT--GCTAGGTGTAACAGTTAACTAA--------AACT-------------ACCAACACTTCTCCTGTTTATTTCACACAA-TATGGA---TTCCAGAAAacgaaagtgagtt---------tttt---------atcgTCAAA---AACACTATATAATTCACAACGACTCC
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold17934   423098 1455 +   591668 I

a score=-9815.000000
s ce10.chrX              5018055  98 + 17718866 GTTTATTTCAATTGAACACATTGAGAGT------------AGTGCTA---------------------GTTTTGCCAGAATTACT---ATTTT-TA---------------TTGAACG--------------GACCACTCTTTGTTGCACCCTATTTTGCACCC-----
s caeRem4.Crem_Contig0   1877101 103 -  4500979 ---TATTCTTGTTATCTAATTGAAAGATCCATAGAGACTTAGAATTA---------------------GCGGGATCTCATTTATTCGGATTTTCTA---------------ATGCAggtcagaaaaaga---aatctcCGT-------------------GTCC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3278949 154 +  4147112 -GCCAATTTCGTCTGTTGAATTAAGAGTCAGTGGGG----AGAACGACGTCCGCTGTTCTCTCCGGCCGTAAGATAGAATACATT---ATTTTGGAGGGGTAAGCGAGAGGATGAAGG--AGAAAGAGAGGTGACCTCCGTCCATTAA-----TTGTCGGGACCAGTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   423098 1455 +   591668 I
e cb4.chrX              10354084  90 + 21540570 I

a score=-8099.000000
s ce10.chrX              5018153 197 + 17718866 ------------------------------------------------TCTCACCAGCGGAGGGTATCACTGCGCA-CAGGCAAAAAGAGGAAAGG---CGCA----ATTATCGATTT---TCTTCCCT----------GCACTGTT-------TCCAAGGACTTTTTGAGCAAATATTCAGCGAAACTTTGGAGTTTTTGAGAGTATTGATAAATTTTATTTTTCTCCAATATTTTATTAC----ACTTGCCAC-CAGCCTCACTTATCACCATATA
s cb4.chrX              10354174 249 + 21540570 TCTCATCAgactgtgtgtgtgtgtgcgagGA--AGTCCGTTTGGGGGGTCTCATTGGCATTGTGCG-CATTGTGC-----GCAAACGGTCCGGAGGTCAGGCCGAACAATATCGATTT---TCTGTTCTCTTGC--------TCATCACctaagttttgaaagtttcaaagtgtcCAATCACCAGAATCT---AGC--Atagaaaagttcaaagaattttt-tcatccaaattttttgtcaatc--aCTCATCGCTCAAAC-CACTTATCACTA-AAT
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   1877204 240 -  4500979 TTTCA-CAGTCAGTGTGTAT-TTTTTGAGGACCGGTGTGTTC---GGTTCTCAGC----CTCTGCG-CACTGTGCA-CAGGCAAAGAGAATGCAGG---GGCCG---CTTATTGATTT---TCCTTTCTCTTGCATTCCGAATCTTC-------CTTTGcgatttcccaaaaaattaaCTGCGCAAACCC---GGT---TggagaaatttttagaatttttcttGGTTAAAATTATCTTTATTC--AATTGTAAC-CAAAC-CACTTATCACCA-ATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3279103 198 +  4147112 ----------------------------------------------CTCTTCTTCGTCGGGTTGCG-CACTGTGCAGTTGACAAAGATGAGATATG---AG------GTTATTGATTTTCCTCCTTCCTCGTCCACCGCAAAgcttt-------ttcttgaagtttc-----------ccatcggaaatc---agttttttgaagaatttaaGGAATGTTTCGGGGTTTAAATTATCTCAATTTTACCTCATCAC-CAAAC-CACTTatcacca-att
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   423098 1455 +   591668 I

a score=149948.000000
s ce10.chrX              5018350 444 + 17718866 ATTC-ATCATTCAGGGCAAGTCCGCAGAATGTCGTCAAGTCGAGTGCATGCAAACAGAGTGGCGTCAGACAGAGGTAACATACCTAGTTTAATG-AACACGCC------AGTCAATAATGACGAAATTTCCCGCTTTTTCTTCTATACT-------CCA---CACATTCTCTCTTTCTGCTTCTCAAAAACTTT-TGAAGATTACGAAATATACCACACCTCTTTTTTTTGCAGTACGTCTTCTCGAAAACGGCAGCTACAACAACCGGCTATGCCGGACGCAAACGGGCATACTTATGTAAGATTTCTTTTCGTTTTATTACGAAAAAATATT-----AATCCATTC--ATGAATT-CAGGCCTTCGCGCCGCCAAGAAATCGACACAATCTGGCAAAGCTAAACTTGAGCGGCATGAGAAATCCAGAGCCAGATTTGACAAATGAAGATAATATGAATAGCTTGTAAGG---
s cb4.chrX              10354423 444 + 21540570 TTTC-TTCTCACAGGCCAAGTCCGCAAAATGTCGTCAAGTCGAGTGCATGCAAAGAGA---GCGTCACACAAAGGTAATTTACCTCGTTTAATGAAAAACGGC------AGTCAATAATGACGAAATCTTTCGGTTTTCT----GCACCCACCCCGCCAGACCACACCCGTGCACACTCCATAACCCAGCCCCGTCGGatatttcgaaacatttt---tttgtgttcttttcAGTAAGACGACCCGAAAACGACAACT---GCCTCCGGCGATGCCGGACGGAAATGGGCAAACTTATGTAAGATTTGTT----AATGA--AACGTTGAATAGTGGGAcgatatttcaaaacaattt-cagaccTTTGCTCCGCCCAGGAATCGCCACAATTTAGCAAAGCTCAACCTTAGTGAAATACATCCGCCCGTACAAGATTCGTCAAATGACGATAATATGAATAgcttgtgagt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1877444 422 -  4500979 CTTC-TTCACCCAGGCCAAGTCCGCAGAATGTCGTCAAGTCGAGTGCATGCAAACAGAGTGGCGTCACGCAGAGGTAACCTACCTAGTTTAATG-AACACGGC------AGTCAATAATGACGAAATCTTTCGTTTTTCG----GCACT-------CCA---CACGTTCCTGCACA---CATTATTCAGACTCG-CGGATATTTCgaaata--------ttgttttcttttcagtaaAACGACTCGGAAAAGACAACT---ACCTCCGGCTATGCCGGACGGAAACGGGCATACACCTGTAAggttttttctagaataa--acggttaaa---------aatgtatttgaatATGTT-CAGCCCTTTGCTCCGCCACGGAACCGGCATAATCTGGCGAAGCTGAATCTAAGTGGGATGCGGAATCCCGAACCGGATTTGTCAAATGAAGATAATATGAACAGTTTGTGAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3279301 426 +  4147112 ttttattcacccAGGCCAAGTCCGCAGAATGTCGTCAAATCGAGTGCATGCAAACAGAGTGGCGTCACGCAGAGGTAACCTACCTAGTTTAATG-AACACGGC------AGTCAATAATGACGAAATCTTTCGTTTTTCG---TGCACT-------CCA---CAC-TTTATTCTCT---CTCTATTCAAACTCGCGggatatttcgaaata--------ttctaTTC-TTTCAGTAAAACGTCTCGAAAACGACAGCT---GCCTCCGGCTATGCCGGACGGAAATGGGCACAATCATGTAAGTTTCAacacaaaatga----tgataaaaaat-----aataattctgaattctttacAGGCATTCGCCCCACCAAGAAACCGGCACAACCTGGCAAAACTTAATTTAAGTGGCATGATGAACCCCCAGCCAGTTTTGAGCAATGAAGATAATATCAATAGCTTGTGAGT---
i caePb3.Scfld02_0      C 0 I 41
s caeJap4.Scaffold17934   424553 401 +   591668 ATTT-TCCTTTCAGATCCAGTCcgcaaaatgtcgtcaaatcaAGTGTTTTCCACTAGAGAGTCGTCACACAAAGGTAACCTACCCTGTTTAATG-AAGATAGCTGCAGAAGTCGATAATGACGAAATATGTTTATTTCCt---ggcttt-------tta--------------------ttcaaaagAAATTCg-taaaaagttttaa-------------------ttttcagtaaaACGGCACGTAAACAACAACC---ACCACCGGTTATGCCCGAGAAAAACGGGCATGGCGTTGTAAGAATAAGCCAGatgtta----ttttaaaaaatc----aatatttta----------tagttttttgcaccgtcgaaaaatcgtttcaaTCTGGCGAAACTCAACTTGAGTGGCATGCGGACGCCTGAGCCGGACACGTCAAATGAGGATAACATTAATAGTCTGTGAGTATA
i caeJap4.Scaffold17934 I 1455 C 0

a score=-5188.000000
s ce10.chrX              5018794 42 + 17718866 CATATTGATTG-----GTACATTTTTCAACTGTATGATAATTGTATT
s cb4.chrX              10354867 36 + 21540570 --ttttttttga---tggatgGCGAGAAATTGCaaggaaat------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1877866 41 -  4500979 --TTTCTGCTG----TGAAGAATTAAAGAACTCACGGTAATAAAATA
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold17934   424954 47 +   591668 AATATTATTTGATTTCGAAATTGTTTTCACCACTTGAACATTGATTT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3279727 41 +  4147112 I

a score=90834.000000
s ce10.chrX              5018836 184 + 17718866 TTTTCAGAGATTATGTGAAGAAATATCTATCAAACACTCTTGTCCTCCCACCAAACGATAGAATTCACGAGTTTGAAAGAGATCACTTGCAAGAGCTGGAACTATTGGGTAATGGCAGTTTTGGAGTGGTTCGAAAGATGCTTCACAGGCCGTCTAACGTAGAAATGGCAGTTAAAGTAAGTTT
s cb4.chrX              10354903 184 + 21540570 ttttcagagattatGTTAAACAATACCTCTCAAACACACTGATCATACCTCCAAATGGCGAAGTCCACGAGTTCGAAAGACATCACTTGGAAGAGATGGAACTTTTGGGGAATGGGAGTTTTGGTGTCGTTCGAAAAATGCTTCATATACCGACAGGAGTAGAAATGGCAGTCAAAGTGAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1877908 184 -  4500979 TTTGCAGAGATTACGTTCGGAAATATCTGTCAAACACATTAGTACTACCGCCGAAAGATGAAATTCATGAATTCGCGCGTGATCACTTACAGGAATTGGAACTTCTTGGCAATGGAAGTTTTGGAGTTGTCCGAAAGATGCTCCACCGACCAACGGGTGTAGAAATGGCTGTTAAAGTAAGCAT
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3279768 184 +  4147112 tttaCAGAGATTATGTTCAGAAATATCTGTCCAATACCCTGGTCCTGCCTCCAAACGACGAGAGTCACGAGTTTGCTCGAGATCACCTTCAGGAATTGGAGCTTCTTGGCAACGGAAGTTTTGGAGTCGTGCGGAAGATGCTTCATAAACCGACTCTTGTTGAAATGGCTGTGAAAGTGAGTGT
i caePb3.Scfld02_0      I 41 C 0
s caeJap4.Scaffold17934   425001 184 +   591668 TTCGCAGAGATTACGTGAGAAAATATCTTTCAAATACCCTTGTTTTACCTCCAAATGATCAAAAGCACACTTTTGATCATaatgatttgaaaaaaatggaagtATTGGGAAACGGAAGTTTCGGAGTTGTCAGGAAAATGCTCCATCAACCGTCGTCGGTGGAAATGGCCGTtaaagtaagttt
i caeJap4.Scaffold17934 C 0 I 36

a score=-2661.000000
s ce10.chrX              5019020 19 + 17718866 ACAAAAGGAA-AATTTAAAG
s cb4.chrX              10355087 18 + 21540570 -TGTAGCAAA-AGTGCTGTc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1878092 19 -  4500979 -TTCAATAGGCAAAgcaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3279952 19 +  4147112 ATTTATTGAG-AAACTTCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   425185 36 +   591668 I

a score=124246.000000
s ce10.chrX              5019039 338 + 17718866  
s cb4.chrX              10355105 343 + 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   1878111 340 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 62
s caePb3.Scfld02_0       3279971 339 +  4147112  
i caePb3.Scfld02_0      C 0 I 471
s caeJap4.Scaffold17934   425221 536 +   591668  
i caeJap4.Scaffold17934 I 36 C 0

a score=0.000000
s ce10.chrX              5019377 8 + 17718866 GAACAATT
e caePb3.Scfld02_0       3280310 471 +  4147112 I
e caeJap4.Scaffold17934   425757 0 +   591668 C
e cb4.chrX              10355448 38 + 21540570 I
e caeRem4.Crem_Contig0   1878451 62 -  4500979 I

a score=-147.000000
s ce10.chrX              5019385 17 + 17718866 AAAACCCGCCTGCAAAA
s caeJap4.Scaffold17934   425757  3 +   591668 --------------AAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3280310 471 +  4147112 I
e cb4.chrX              10355448 38 + 21540570 I
e caeRem4.Crem_Contig0   1878451 62 -  4500979 I

a score=-3574.000000
s ce10.chrX              5019402 58 + 17718866 CCAAATTCCTTGATAAAGTAAAACATCCGCTGCGTT--------AACAAAACTACACCAAAACGTA
s caeRem4.Crem_Contig0   1878513 65 -  4500979 CTAAAGTCTTTCAGGTAGTTGA-CAAAAGTTTCGTTTTTCATGCAATAGAACTATTCACGGTTGTT
i caeRem4.Crem_Contig0  I 62 I 7
s caeJap4.Scaffold17934   425760 32 +   591668 TCATATCCTcttgcaaaaataa-aatgtgCGCC---------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3280310 471 +  4147112 I
e cb4.chrX              10355448 38 + 21540570 I

a score=0.000000
s ce10.chrX              5019460 2 + 17718866 TT
e caePb3.Scfld02_0       3280310 471 +  4147112 I
e caeJap4.Scaffold17934   425792 0 +   591668 C
e cb4.chrX              10355448 38 + 21540570 I
e caeRem4.Crem_Contig0   1878578 7 -  4500979 I

a score=36968.000000
s ce10.chrX              5019462 72 + 17718866 CAATTTGTA---TATTTCAGACCATTCGAGCACTGGAGCATCTGAAAACCACACACCACATCATACATCGAGGTA
s cb4.chrX              10355486 75 + 21540570 caatttttgttttatttcagACTATTCGCGCTCTGGACCATCTCAAAACGTCCCATCACATCATTCATCGAGGTA
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   1878585 72 -  4500979 Gaaattcta---tatttcagacaattcgCGCTCTGGAGCACCTCAAAACAACTCATCACATCATACACCGAGGTA
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0       3280781 72 +  4147112 --aattttgttat-tttcagactaTCCGAGCCCTGGAACACCTGAAAACCACACATCACATCATTCATCGAGGTA
i caePb3.Scfld02_0      I 471 I 34
s caeJap4.Scaffold17934   425792 64 +   591668 -----------CTTTTGCAGACTATCAAAGCTCTGGAGCATCTCAAAACCACTCATCACATAATTCACCGaggta
i caeJap4.Scaffold17934 C 0 C 0

a score=159.000000
s ce10.chrX              5019534 5 + 17718866 AGTTC
s cb4.chrX              10355561 5 + 21540570 AGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1878657 5 -  4500979 AATTG
i caeRem4.Crem_Contig0  C 0 I 35
s caeJap4.Scaffold17934   425856 5 +   591668 aataa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3280853 34 +  4147112 I

a score=-1690.000000
s ce10.chrX              5019539 36 + 17718866 CCATTCCAATTTCGCTTTTTTTCCAAAATTGTTTTT
s cb4.chrX              10355566 25 + 21540570 C-------AT----CTACTCATCTGAAActattttc
i cb4.chrX              C 0 I 3
s caeJap4.Scaffold17934   425861 33 +   591668 --atataaattgcATTACGCTTC-ACAGTAGCCTAT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3280853 34 +  4147112 I
e caeRem4.Crem_Contig0   1878662 35 -  4500979 I

a score=-1253.000000
s ce10.chrX              5019575 9 + 17718866 ATCACTTTT
s cb4.chrX              10355594 9 + 21540570 tttgatttt
i cb4.chrX              I 3 C 0
s caePb3.Scfld02_0       3280887 8 +  4147112 ttcaattt-
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17934   425894 3 +   591668 ----GTT--
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1878662 35 -  4500979 I

a score=79538.000000
s ce10.chrX              5019584 187 + 17718866 CAGACATCAAGCCATCGAATATTCTGCTGGACAGACATGGCTGTGTCAAGTTGTGCGATTTCGGTATCTGCGGCTATCTTCAAAACTCAGTTGCTCAGTCTGTTGATGTCGGCTGCCGTCCGTACATGGCTGTAAGTTTT-GAAATATTCAAATCA-TGAAGAT---TTCGCAATTTAAGCGGGGTTTTATT
s cb4.chrX              10355603 160 + 21540570 cagacatcaaACCATCAAACATTCTGTTGAACAGGTCTGGTGGTGTCAAGTTATGCGATTTTGGAATCTGTGGCTATCTACAAAACTCTGTTGCTCAATCGATTGATGTCGGTTGTCGGCCGTATATGGCGGTGAGTGtt--------------------------------acttgaaattttgatctacg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1878697 155 -  4500979 CAGACATCAAGCCATCAAATATTCTGCTGGACAGGCATGGCTGTGTCAAGTTGTGTGATTTTGGTATATGCGGGTACCTTCAAAACTCCGTTGCCCAGTCTGTGGATGTTGGATGTCGACCGTACATGGCGGTAAG-------------------------------------CTTTTAGTTTCGTTTTATT
i caeRem4.Crem_Contig0  I 35 C 0
s caePb3.Scfld02_0       3280895 150 +  4147112 cagatatcAAGCCATCGAATATTCTGCTGGACAGACATGGCTGTGTCAAGTTATGCGATTTTGGAATCTGCGGGTATCTTCAAAACTCGGTTGCTCAATCGGTTGATGTTGGTTGTCGACCGTATATGGctgtgag---------------------------------------ttattttttgatct---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   425897 192 +   591668 TAGACATCAAGCCATCGAATATTCTGCTCCACAGAAATGGCTGTGTAAAACTATGCGATTTTGGAATTTGCGGGTATCTTCAAAATTCGGTTGCTCAATCTGTAGACGTCGGTTGCAGACCATATATGGCGGTATGTTTCAGGATTATTTAAACTgctgaaaattcatttttgttttgaacgGGATATTAAT
i caeJap4.Scaffold17934 C 0 C 0

a score=-8550.000000
s ce10.chrX              5019771 88 + 17718866 TGCATGCGTCTCCGTGGAAACAACACCCTAACAAAGGTCGGAGTTCACATTTCAACATAATTGAGATCTCGTGAATTTT-------CGAAACTAT
s cb4.chrX              10355763 34 + 21540570 a----------------------------------------------------cGTATGGTCTAGCTCTCGAGATTT---------CGAAATCGT
i cb4.chrX              C 0 I 130
s caeRem4.Crem_Contig0   1878852 42 -  4500979 G-----------------------------------------------------GTACACAGCAACCCCTAAAAGCTATAAAAGAACCAAGTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3281045 20 +  4147112 --------------------------------------------------------------------ttgaaaattgt-------ggaagCTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   426089  0 +   591668 C

a score=-18838.000000
s ce10.chrX              5019859 330 + 17718866 CAAAAAAGACAGGAAGCCTAAAACTAAAGAAATTT-CGTTGTTTTTTCTTTTAAGCTATGAATTTTGTTTAAAAATTGTGACTCTTAACTGACAGAACTCGTTGTGTAATAAATAATTTATTCATATTTACAAACGAAACCGAAATTTGACCTATCAAAAAAAAATAGCGTGCTGCGCTTCACTACTATGCGTTATTAAATAGCTGCGCGTTTTT-GTATGAAGTGTTTTCTTTTGAAAAAATCTTCAGTTTTGGAAAACGACATATGTA--------CGTTGTTTTTAAAAGAAATTAAAAATAAAAGGACCTA---------TTGTCAAAGCTTATTAC---CGATTCCA
s caeRem4.Crem_Contig0   1878894 194 -  4500979 ------AGACAAAATGACT-------CAGAAATATGCGCCGGATTAGTATTT-CGCAatgtattttgttttg-------------------------------------------------------------------------------------aatgaaaata-cgTAtttttttt-----------------------CTGCGCTTTTTCCATATGTGATACTG------------ATCTGTAGTTATGAAACAAAAACGTAGAA----------TGATAATGACAAGAAA--GACGGTACattaaactaattttttttttgtgaaaacttttatt-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3281065 135 +  4147112 -------TACGAAATAG---------CATAAATGT-----------------------TAAGTTCCGTTTAG----------------------------------------------------------------------------------CCAGGGGAAAATA-------------------------------------------------ATATGCAGCTCAG------------------AATTTCGCAACAAAGTGGGATTAGTCACATCTCTTATTATA-----------------------------TCTGGTTTTGTGGAAATTGTGTTTGAATGATCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   426089   0 +   591668 C
e cb4.chrX              10355797 130 + 21540570 I

a score=138614.000000
s ce10.chrX              5020189 519 + 17718866  
s cb4.chrX              10355927 486 + 21540570  
i cb4.chrX              I 130 C 0
s caeRem4.Crem_Contig0   1879088 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3281200 443 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   426089 670 +   591668  
i caeJap4.Scaffold17934 C 0 I 1852

a score=24055.000000
s ce10.chrX              5020708 361 + 17718866 -------------TCATTCATATCATTTTCCTC-----GTCCGTCTCAACTT--------------TCCACTACTTGTTGCCT---------TTTTTCTTTCTA--AACTACCGAAACAAATTCC-------CA--TGCACCTCAT-CATGTTCTACAATTTTTTA-----------------AAGTA----AATTCAATGTATTTGTGATAACATCCATGCATATTCTAGTCATTCACAACCAATCAATTTGTGATTATTTT------------------TCTCAATAAGATGTTTCTATTTCACTCTCTAATCAG-------CACCGAAGCTCATTTTCTACATTACACACAC----------GAGA----GTGATTCATTTATTTGTCTTTTGTTTCTATCATCTCGTTTTGATGTCACT-----CTTGTCATGTTTTCGAGTGAA--AATGAACACTGTAAAAAGAAATT----GATCATC---
s cb4.chrX              10356413 397 + 21540570 -------------TTCTTcatatcatttttctt------ctcgattCCTCTT----------------CAGCTCGTGTTGCCTATatctctctttcttcttctg--aacAACT----CAAATACAAACTACGTC--TCAACCTCATCCATGTAatacatttcattttttttcctcctaAAATCTGGTTTTCATTTCCAATGTATAAGTGATAACTTTCAAGCATATTCTAGTCACCACCCTACATTCAAATTGTGATTTCCCT----ACTGCTCACCATCACctcttctag--gctt-ttctctcttttttcttctccctctctctc----atTCATTA-TCAATCTGTacacacatttttttgctCCACCGTTTGACTCATTTGTTTGTCTTTACAGCCTGTCATC----------ATCAATATA--TTCTTCGTGTT----AGCGAT--AATGA-----------AATACTT----GATGATC---
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0   1879575 388 -  4500979 -------------TTCCtcatatcatttttctt-------tctgttcttctc---------------aaaaaacttgttgCCT---------TGTTTTCTTCAAGTACTGACT----CAAATCCA-------TC--ATCAcctcat-cattttttaattatttctttctttctttcccccattcggtt----tttcCATTGTATAAGTGATAACATTCATGCATATTCTAGTCA--AACACACCTTCAATTTGTGATTTTATCCAAAAGTGGTTAT-----TCCAATCTAG--GTTT-TGTTTTGTGCTCTAATCAGCTTCTTCTGCTGAAGTGCATCATTCAATTTGTACACACTTTTTCCT--CCCACC--CTGACTCATCTATTTGTCTTCACTTTCTATCACCTCACCTCGTTGTCACTTGA--TTTTTCATG------GATGAT--AATGA-----------AACATTTGGTGGGTGATC---
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3281643 408 +  4147112 TAAtctctttcatttattcatatcatttttctttcacatttcatttcctctttctttcatattttttcaacaccttgttgcct-------------tttttcaAGTACTGACTGACACAAACCCT-------TCAAACCACCTCAT-CATTTtctaactatttttttct--------------cggttttttgttccaatgTATAAGTGATAA-GTTCATGCATATTCTAGTCA--ATCAACCTCTCAAAATGTGATTCTTTCCACTAGTGGTTAT-----TCCAGTTTAG--GCTTCTATTCCGTGCTCTAATCAG-------TGGAAAAGAGCATCAATAAATTTGTACACACCTCTTTTC--TT------CTGACTCATCTATTTGTCTTGATGTTCTATTGCC--------TTGTCACTTGACGTGTTTCCTG------CATGATGAGATGA------TAGACAATGTGTGGATTCTGATCAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   426759 1852 +   591668 I

a score=-506.000000
s ce10.chrX              5021069 21 + 17718866 AAAGTGAATTTCTAAAATGCC---
s caeRem4.Crem_Contig0   1879967 18 -  4500979 ---GGGAGGTTCctgattgtt---
i caeRem4.Crem_Contig0  I 4 I 3
s caePb3.Scfld02_0       3282051 23 +  4147112 -TGGAAAAGTTCCTcgttgttttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   426759 1852 +   591668 I
e cb4.chrX              10356810 23 + 21540570 I

a score=3210.000000
s ce10.chrX              5021090 14 + 17718866 AAACATTCGA---TTGT
s cb4.chrX              10356833 11 + 21540570 AAACATTCGA------T
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   1879988 11 -  4500979 aaacattcgg------t
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3282074 17 +  4147112 aaacattcggttattat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   426759 1852 +   591668 I

a score=65185.000000
s ce10.chrX              5021104 182 + 17718866 TATTATTAATATTAAGACAACAACAACCATC-CATG--GATTTGCGAGAATGGAGGTCAAGATATCTGTCGCGCGAGAAACAGTTG----------AAAT------TAGGGGGCAAAAGAGAAAGGAA-GAAAAGTTTGTCGA-ATCGTATCTGTGAAACATTTGATTAGGTTGGAATGCGATTTTGGTTTTTCCTATGTCTG
s cb4.chrX              10356844 193 + 21540570 TATTATTGTTATAATAACACCCCAAACCATCACGGGAGGATT---GAGAA-GGAGGTCAAGATAGTCTC---GCGCAAAATAGTTGTagaatggagaaaatgaaatggaaagaagaaagagaaaagaa-gcaaagTTC-TCGA-ATCGTATCCGTGAAACATTCGATTAGGTTAGAAtgcgattttcgtttttcttatgTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1879999 189 -  4500979 tattattattattaagaTAACAAGAACCATC-CGCGCGGG-----GCGAA-GGAGGTCAAGATATCCGC--AGCGCAAAACAGTTGGgaaaagga-aaaccgaa--gagatgaagaaagagaaaagaaggaaaagttc-tTGA-ATCGTATCCGTGAAACATTCAATTAGGTTACAATGCGATTTTCGTTTTTACTTTGTCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3282091 188 +  4147112 tattattattattaagaTGACAATAACCATCGCGCG---------GAAAA-AGAGGTCAAGATATCCGCC-AGCGCaaaacagttgggaaaaggc-aaatgggagaaaagggaagaaagagaaaagaa-gcaaagTTC-TCGA-ATCGTATCCGTGAAACATTCGATTAGGTTAGAATGagacttttgtttttatgttGTCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   428611 157 +   591668 TATAATAA--ATAAAGATAAC----ACGACAACGCG---------GTAAA-AGAGGTCAAGATATCCAC----------ACAGTTGGT------------------GAAAAGATGAAAGTGAAAAGAA-GCAAAGTTC-TCTATATCCTTTTCTTGAAACATCCCGTTCAATTAGAATgcagttttggtttttgttcAGTTTG
i caeJap4.Scaffold17934 I 1852 I 23

a score=11184.000000
s ce10.chrX              5021286 38 + 17718866 ACTTGCTTGCTGACTACTGTTAATGCAACATGTAAGTT
s cb4.chrX              10357037 38 + 21540570 GCCAATTGTCTAGTTATTGCTAACGCAtcatgtgagtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1880188 38 -  4500979 GCCAATTGGCTAGTTATTGCTAATGCgtcatgtgagtt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3282279 38 +  4147112 GCTTATTGGATATTAATTGCAGATGCGTCATGTGAGTT
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold17934   428768 23 +   591668 I

a score=-5051.000000
s ce10.chrX              5021324 49 + 17718866 CAAATTTCAAATATCATTTTTTAAAATTAGTATTGTAC-------------------TCTACT-TCTCA
s cb4.chrX              10357075 65 + 21540570 tttattGTA---ATCTTTTGTGAAAAGT-TCATTATAAAATGAAATGAACGGAACACTCTTTTGCCCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1880226 14 -  4500979 ttt------------------------------------------------------tctttt-tctag
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3282317 38 +  4147112 I
e caeJap4.Scaffold17934   428768 23 +   591668 I

a score=-43616.000000
s ce10.chrX              5021373 365 + 17718866 -ACTTTAAAACTTTGATGGT------CAATTTGTAGAGCGTAATAC----------TATAATTCATAAGAAACATACTCAGTGTGGcatgttctcccaatatttttcattaaaatcaaatgatagcat-------------------------------------------------attgaaaaatactttctttatgtaaaaactt-tttttttacatctcagtcggaacaaat---gaatatctaataaaataattttctgaaagttggaatttaccagaagcagtt-----tttga-----tagtttttcggagtttttcagacaatttttgag--------------cagtttttcaaatgttccaacttaaa------ttaaaattg----------------ttttcaggcaaaactaatattttctctgtactctatcactaaattttagagaaaagaattggaagaacatta
s cb4.chrX              10357140 422 + 21540570 AATATTTAAATCATCTTGACACGAAAAAGACTGAAGAATGGAAGTTTCTAAAAGCGTATTAATTTAA----------TTAGGGGACCAAAT---AACAATTGTTAGCTTCTGAATTGATCAACTTTAGTCGAATTTTGAGggaaagattttttaaacaaattaaGTACCCCGCAAAGTTTCCCAACTTTTTTATTGATGAAAAGAAGCTTATTcagatgttt-------aaaaaatacagaaagtTTTGTCGCGTGAGTCTGAAAGTCTTCAGGTCTACTGAACAGAAATATAGCTTCGATTTTGCTGTTATTCagatttctttcaaaaatttattattataAATGCTATACCGGCTTTTT-----TCATAACTTCTA------GCAACAGCACCGAGTCCAGAGTCGATTTTGAGG-----------------------TCCATTATCTAAATTCgt-----gtaaaagaaaaaatatca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1880240 177 -  4500979 gaCAGTTGATCAGTTATGAT------------------------------------TATTGAGTATA----------TTCTGACAACAAAT--------------------------------------------------------------------------------------TTTCCCAATGATTGTA----------------TACTAGAACTTTC-------GACCAAC---GAACGTTCTGC------------------------TATATTGAACCAAGTTCAAACTTTGA-------------------------GACAATCT-------------------CGGT-------------TAACCTTTA------TTAAC--------------------CTTTAAgg---------------------------ttactgaaa------------aaaagaaaaaacatca
i caeRem4.Crem_Contig0  C 0 I 19
s caePb3.Scfld02_0       3282355 226 +  4147112 -ATTTTAGAACTGGGCTGAA--------GTTAGAGTTACGGTATTT----------TATAAGTCTCC----------TCATAATGACAATG-----------------CTTAGATTAGtcagtttcag-------------------------------------------------atttcaaattctt-------------------tgtcatttcattc-------gaaaagG---GAGTGACTagc------------------------ccaacaaaaaaaagataaaaacttGA----------------------------------------------------AGGC-------------taagttttgaattgttcaCC--------------------TCGTATAGCA---------------------TTCATCATTAAAAATCAC-TTTAGTAATCAAAGAAACTCTA
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold17934   428768  23 +   591668 I

a score=-6880.000000
s ce10.chrX              5021738 75 + 17718866 ttcactggctcatttGGCCGGTTGGC----------CGGCAATTGCCATGTAGCCCGGCCTCTGTGCC----CACTGCTTTAATGAGGC
s cb4.chrX              10357562 39 + 21540570 ---------aacatttgccaactgat---aaaatattggtaata-----------------ctacgat---------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3282581 72 +  4147112 TTC---GTCCTGTTTTGCTCATTTGTTTCAAAGCCATGGTGCTCGACACTT---------TCTAAGCTGGCTCAAAAGTTTGAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   428768 23 +   591668 I
e caeRem4.Crem_Contig0   1880417 19 -  4500979 I

a score=-1811.000000
s ce10.chrX              5021813 27 + 17718866 AGATAGTATCTCGGTTATTGTTGATTT
s cb4.chrX              10357601 19 + 21540570 agata--------atttttgtaagttg
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   1880436 19 -  4500979 AGATA--------GAATCTGTCgattt
i caeRem4.Crem_Contig0  I 19 I 70
s caePb3.Scfld02_0       3282653 14 +  4147112 ---CA--------GTTATCATAACA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   428768 23 +   591668 I

a score=-8136.000000
s ce10.chrX              5021840  91 + 17718866 TTTTGCAAAATATGTTTCTATATTTCGGTTGTTGAACTTTTTTTTTAAATGAGACCTAATAGTAAGACAACCAAGATATAAGCCGTCAATA-----------------------------------------------------------
s cb4.chrX              10357635 136 + 21540570 ctttac-cAGGA-ATCTAGATACTTAAGT--TTGAAGTT--------GACGGGCCTCTATTAGAGGATA--TACCGCATATCTCATTAGGACGAAtctatacaaaaaaaagtgacaactacaaaattgaggCTTTAGTTTGCATTTATTC
i cb4.chrX              I 15 C 0
s caePb3.Scfld02_0       3282667  42 +  4147112 ATTCGCACAGTA-ATCTTCAGACAAAAAT------------------------------------------------ATATCCCATTAGta-----------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold17934   428768  23 +   591668 I
e caeRem4.Crem_Contig0   1880455  70 -  4500979 I

a score=20.000000
s ce10.chrX              5021931 29 + 17718866 GACGGGTTTGAAAA---------------ACAGACGCAATTGAT
s cb4.chrX              10357771 44 + 21540570 AATAGGTCTGAAAGGTTATAGGCTCCTCTAAAAATTCAGTATAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3282709 51 +  4147112 I
e caeJap4.Scaffold17934   428768 23 +   591668 I
e caeRem4.Crem_Contig0   1880455 70 -  4500979 I

a score=316.000000
s ce10.chrX              5021960 9 + 17718866 ACGTTAGTC
s cb4.chrX              10357815 9 + 21540570 TTCTTTGTC
i cb4.chrX              C 0 I 19
s caeJap4.Scaffold17934   428791 9 +   591668 ATGTGAGTT
i caeJap4.Scaffold17934 I 23 C 0
e caePb3.Scfld02_0       3282709 51 +  4147112 I
e caeRem4.Crem_Contig0   1880455 70 -  4500979 I

a score=-5450.000000
s ce10.chrX              5021969 33 + 17718866 AATTT--------TGGTATTCCTGTTTACTTCAC-CCAGTAA
s cb4.chrX              10357843 41 + 21540570 aatTTCCTGGCTACAATCAACCAATGAATTACGA-AGAACCT
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   1880525 16 -  4500979 aattt-------------------tgaactttaa-------t
i caeRem4.Crem_Contig0  I 70 C 0
s caeJap4.Scaffold17934   428800 42 +   591668 TATTTGTTTGTGTCTATTTACGTGTACATCGTAAGATAACAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3282709 51 +  4147112 I

a score=232829.000000
s ce10.chrX              5022002 748 + 17718866  
s cb4.chrX              10357884 738 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1880541 747 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3282760 739 +  4147112  
i caePb3.Scfld02_0      I 51 C 0
s caeJap4.Scaffold17934   428842 869 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=106381.000000
s ce10.chrX              5022750 110 + 17718866 AATAACATTTTT-------TTTAAA------GAACTGCAAAAAGGAG---TTGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
s cb4.chrX              10358622 108 + 21540570 -------tttca-------attaaaaatgataagaaacaaaa-agag---ttGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1881288 103 -  4500979 -------ttttc-------ttttca------aaaaagcaaaacggaG---TTGCCTGCTGctggaatcgaaccagcgTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7134376 117 - 33334924 aaaaatattttaaaaccattttgaa------aaaaagcaaaaatgaa---atgcCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
i caeSp111.Scaffold629  N 0 N 0
s caePb3.Scfld02_0       3283499 100 +  4147112 -------TTTTa--------tt--a------aaagaataaaaaggag---TTGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   429711 114 +   591668 -----cattttt-------gttttataaaataaaatttaaaaaaaagacaatgCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGA
i caeJap4.Scaffold17934 C 0 C 0

a score=10789.000000
s ce10.chrX              5022860 27 + 17718866 AAGAGAGCGTACTCGCTGGGTTTTATC
s cb4.chrX              10358730 27 + 21540570 AAGAGAGCGTGCCTCATTGCGTTTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1881391 27 -  4500979 AAGAGTGAGCGCTCCAGGGTGTTTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     10295 27 -   141584 AAGTGTCTGCGCTCTATGCCATTTATC
i caeSp111.Scaffold567  N 0 C 0
s caePb3.Scfld02_0       3283599 27 +  4147112 AAGTGCTTGCGCTCAATGTCCTTTATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   429825 27 +   591668 GAGAACAGGCGTTAGtttgcctttgtc
i caeJap4.Scaffold17934 C 0 I 36

a score=-9852.000000
s ce10.chrX              5022887 33 + 17718866 TGCCGCCACCGGGGC------AACAAAAAAC--ATTGAAAG
s cb4.chrX              10358757 30 + 21540570 TACTGG-------GCACAC--GAGAGGAGAC--AGCGAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1881418 34 -  4500979 TATTAGCTGTC--GCA-----GAGAGTaaacgaagaaaacg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     10322 29 -   141584 TAGTGGCAAGCGGGCGACctggagagaaa------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3283626 20 +  4147112 TA-----------TCGACCCGCAGAGAAATC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   429852 36 +   591668 I

a score=259230.000000
s ce10.chrX              5022920 351 + 17718866 GCATGTATTGCAGAATGCCAACGTGACGAAACTTTGTCCTACTTTTTGGTGTATGGGAGTCGGTTATCAACCAAAATGTTGCCACAGAGATTGAATGGAGTTGACCAAAGCAGTTGCTTGATGTATTGCAGTCAAAACATTGTTA-----------------GGATTTA--TAA-----CATTAATGAAGTAATTTACGAATTTTTATTTCAGAATGCAATCGGTCAAAATATACCATGCTATTCTTTGAATTATGAGCCAACAAATGAGATTTGTGAAATGTACGGAGAACAGACCAGAAATGAAAGTGATTCTGCAACATTGGCTATTGATGACGAGCATAATTTCGGGGACAAGTTTTGCATAAAAAGTTTG
s cb4.chrX              10358787 352 + 21540570 TAACATATTGCAGAGTGCCAGAGAGACGAGACGCTGTCCTACTTCTTGGTGTACGGCAGCCGGCTTTCAACGAAAATGTTACCACAAAGATTGAATGGCGTGGATCAGAGCAGTTGCTTGATGTATTGTAGCCAAAATATTGtgagctagaaaatttcaTTCGTTTGAAATGAA-----TATTAATAT------------------ATTTCAGAATGCCATCGGTCAAAATATTCCATGTTATTCTTTGAATTATGAACCAACTAACGAAATTTGCGAGATGTATGGAAAACAAGAACGTAATGAAAGCGATTCTGCAGTCTTGGCTATTGATGATGAGCACACTTTTGGAGACAAATTCTGTATAAAGAGTATG
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1881452 347 -  4500979 aaagattTTGCAGAGTGTGAGAAAGACGAGACGTTGTCGTACTTCTTGATTTATGGCAGTCGgttatcaacaaaaatgttACCACAAAGATTGAATGGTGTTGATCAGAGCAGTTGTTTGATGTATTGTAGTCAGAATATTGTAA-----------------GTATCAAATGAA---ACTAGAAATACGGT--------CATAACAATTTTAGAATGCAATCGGAGAAAATATTCCATGTTATTCTCTCAATTATGAACCAACCAACGAGATTTGTGAAATGTATGGAGaacaagaaagaaatgaaagtgaTTCTTCAGTATTGGCTATCGATGATGAACACACTTTTGGAGACAAATTTTGCATTAAAAGTGAG
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold567     10351 349 -   141584 gagagtatTGCAGAGTGCCAGAAGGACGAGACGTTGTCGTATTTCTTGGTGTATGGCAGCCGACTATCAACGAAAATGTTACCACAAAGATTGAATGGAGTGGATCAGAGCAGTTGTTTGATGTATTGCAGTCAGAATATTGTAA-----------------GTGATTTGGGAAACCcctaaaaatgagaaaaacta--tATTA-------AGAACGCTATTGGTCAAAACATTCCATGTTATTCTCTCAATTATGAACCAACCAACGAGATTTGTGAAATGTACGGGAAGCAAATCCGAAACGAGAGTGACTCGGCTTTGCTAGCAATTGATGACGAGCATACGTTTGGAGACAAATTCTGTattaaaagtaaa
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3283646 347 +  4147112 GAAAGTCTTGCAGAGTGCCAGAAAGACGAAACATTGTCGTATTTCTTAGTGTACGGAAGCAGATTATCAACTAAAATGTTACCACAGAGGTTGAATGGAGTGGATCAAAGCAGTTGTTTGATGTATTGCAGTCAGAATATtgtaa-----------------gaaaaaaggaaa------gaaaatcaGAGAGCTTA--GATGAAATTTACAGAATGCAATCGGCCAAAATATCCCATGTTATTCTTTGAATTACGAGCCAACtaatgaaatttgtgaaatgtATGGAGAACAAACACGGAATGAGAGT---TCCGCCATTCTGGCGATTGACGATGAACACACTTTTGGTGACAAGTTCTGCATTAAAAGTAAA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   429888 347 +   591668 ttttattttgcaggGTGTCAGAAAGGAGAGACTTTGTCGTATTTTCTGGTGTATGGAGCTCGTCTTTCAACAAAAATGCTCGCTCAACGGCTAAACGGGGTGGACCAAAGTAGCTGTTTGATGTATTGTAGTCAGAATATTGTaa----gaaaattc-----atttaaaGCGAA------AACAAT-------------TATTAAATTGACAGAACGCTATTGGTCAAAATATTCCGTGCTACTCTTTGAACTATGAGCCCACCAACGAAATTTGTGAAATGTATGGAAaacaagagagagagaaaaatacgTGGGCTTCTTTGGCGATTGACGAGGAGCACGATTTTGGAGACAAATTCTGCATTCAGAGTTag
i caeJap4.Scaffold17934 I 36 C 0

a score=-9517.000000
s ce10.chrX              5023271 30 + 17718866 TCATTATTTATAAGCAGT-ATTTCAATTTTA
s cb4.chrX              10359144 27 + 21540570 AAAT-TATTAAAAGCTGCTGAaatcatt---
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold567     10702 29 -   141584 aaat-atttaaaaactga-aacaaaatttga
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3283995 26 +  4147112 TTATGATTCGCAAAC-----ATAAAATTCAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   430235 14 +   591668 ttttttcctgaaat-----------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1881799 35 -  4500979 I

a score=60564.000000
s ce10.chrX              5023301 163 + 17718866 T------TTTTTCAGCAAAATATCACTGTGATGCAGAGACATTGTATCCGGTACATCTTTACAAGAAACTCATGAAGAATATTATCGCACGAGTTCCTGGACTTGCCTCGAAAA-------TTTCGTGCTTATCAGAGTGCATTGA------AAATCGAGAATGCAAGGTGGGAACTgaagg
s cb4.chrX              10359171 159 + 21540570 g------attttcagcgaaaaaccATTGTGATGCTGAAACTTTATATTCGGTTCACTTGTACAAAAAACTCACGAAGAACATTATTGGAAAAGTTCCAGGGCTAGATTCCCAAA-------TTCAATGTTTAAAGGAATGTATTGA------GAATCGGGAGTGCAAGGTAGAA----AAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1881834 152 -  4500979 t------tttttcagcaaagaaTCACTGTGATACGGAAACTCTCTACCCAGTTCACCTTTACAAGAAATTGACAAAAGATATAATTGGGAAGGTTCCCGGGTTAGACTCAAAAA-------TGGCATGTCTAGCAGAATGTATTGA------AAATAGAGAGTGCAAGGTA-----------
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold567     10731 150 -   141584 -------aatttaagcAAAGAATCACTGCGACCCTGAAACACTGTACCCAGTCCATCTTTACAAGAAATTGATCAAAGATATCATTGCAAAAGTACCCGGATTGGATTCTAAAG-------TTGAATGTTTGAAGGAATGTATTGA------GAATAAAGAATGCAaggt------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284021 158 +  4147112 TCCCGACGAATTCAGCGAAAAATCACTGCGACCCTGAAACGCTGTATCCAGTTCATCTGTACAAGAAGCTGACCAAAGATATCATTGCAAAAGTTCCGGGCTTGGACTCCAAAG-------TTGACTGTTTAGCAGAGTGCATTGA------GAATCGAGAGTGCAAGGTT-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430249 143 +   591668 ------tttttttaacg------cacTGCCCTCACGAAA--GTGCGCCCCGTT------------GAGCTAGCGGAAAAAACTCTTGTCAGAGTGCCAACTCCCATTTTTCGAGAGTAACTTTTGAGGCCTAGAAGAGAGCGTTCAAGCGACGAGGCGCAGACGAGAgg-------------
i caeJap4.Scaffold17934 C 0 I 50

a score=-6925.000000
s ce10.chrX              5023464 31 + 17718866 ttttcaaactggttccctgacgttggtggta
s cb4.chrX              10359330 31 + 21540570 AGTTGAACTTCATTTTCTAACACCGGAAGTA
i cb4.chrX              C 0 I 1133
s caeRem4.Crem_Contig0   1881986  9 -  4500979 -----------Agcttttga-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     10881  2 -   141584 ------------------aa-----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284179  9 +  4147112 -----------TGATTCCAA-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   430392 50 +   591668 I

a score=-3373.000000
s ce10.chrX              5023495 22 + 17718866 tacatttaagagggttattgca
s caeRem4.Crem_Contig0   1881995  8 -  4500979 -----ttaaaaaa---------
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold567     10883 15 -   141584 -------aaaaaacaaacaaaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284188 15 +  4147112 -------ATGGAGGTTTGAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   430392 50 +   591668 I
e cb4.chrX              10359361 1133 + 21540570 I

a score=-2296.000000
s ce10.chrX              5023517 15 + 17718866 tgccacttcaaaaaa
s caeSp111.Scaffold567     10898  3 -   141584 tat------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284203  6 +  4147112 TATCAC---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430442 15 +   591668 tgcgtctccacaaag
i caeJap4.Scaffold17934 I 50 C 0
e cb4.chrX              10359361 1133 + 21540570 I
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=360.000000
s ce10.chrX              5023532 36 + 17718866 tttagctgtttcaaagcaggttcagccaaactcgcg
s caeJap4.Scaffold17934   430457 29 +   591668 -------GCGGTCTGTCAGATTTAGTTAAACTTGTG
i caeJap4.Scaffold17934 C 0 I 46
e caePb3.Scfld02_0       3284209  0 +  4147112 C
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10901  0 -   141584 C
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=-4496.000000
s ce10.chrX              5023568 80 + 17718866 gtcttgcgtttcatgttgctCCGTTACACTATTTCACTATTGGTAAGCATATAGATGTTTGGAATTTTTTTTCGGAAATT
s caeSp111.Scaffold567     10901 18 -   141584 --------ttttaaatga---------------------------------------------attcGTTT---------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284209 23 +  4147112 -TCTCTAGTTTTAGGCTG-----------------------------------------------TCACtt---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   430486 46 +   591668 I
e cb4.chrX              10359361 1133 + 21540570 I
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=-215.000000
s ce10.chrX              5023648 19 + 17718866 TTTCCAAACCAAGAAGATT
s caePb3.Scfld02_0       3284232  9 +  4147112 -------acaaaaaag---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430532 18 +   591668 ctttcaaaaaaaaaatat-
i caeJap4.Scaffold17934 I 46 C 0
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10919  0 -   141584 C
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=977.000000
s ce10.chrX              5023667 39 + 17718866 AGAACAAGCGCTCAAAACG---TCTTATTTCACCTGAAAATG
s caeJap4.Scaffold17934   430550 31 +   591668 -----------tcaaaacatttttttatttcagcaaaaaatg
i caeJap4.Scaffold17934 C 0 I 27
e caePb3.Scfld02_0       3284241  0 +  4147112 C
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10919  0 -   141584 C
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=0.000000
s ce10.chrX              5023706 19 + 17718866 TAAGCCATTTAGAACTTTT
e caePb3.Scfld02_0       3284241  0 +  4147112 C
e caeJap4.Scaffold17934   430581 27 +   591668 I
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10919  0 -   141584 C
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=-9205.000000
s ce10.chrX              5023725  84 + 17718866 TATAAATGTTCATCATTA---------ACCTT----CTTATGTCAAGGGACCAGTTCCAACCGTTTTAAGT------------------------------AAGATTTTAAAA--------ATTGTGTACAACTA
s caePb3.Scfld02_0       3284241  11 +  4147112 ---gaatgtgCGTC-------------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430608 135 +   591668 TATACTTGTTcaagaaaatgacaaaacacATTATTGCTCAAATTCCGGGCCTAAACTCAATAGTTGCATGTCTCGCAGAATGCATTGATAACAAGGACTGCAAGGTATCAAAACACCAAACAAcatttttaactg
i caeJap4.Scaffold17934 I 27 C 0
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10919   0 -   141584 C
e caeRem4.Crem_Contig0   1882003  18 -  4500979 I

a score=-639.000000
s ce10.chrX              5023809  3 + 17718866 AGA-------------
s caeJap4.Scaffold17934   430743 16 +   591668 aaatttttttttctgt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3284252  0 +  4147112 C
e cb4.chrX              10359361 1133 + 21540570 I
e caeSp111.Scaffold567     10919  0 -   141584 C
e caeRem4.Crem_Contig0   1882003 18 -  4500979 I

a score=2446.000000
s ce10.chrX              5023812 4 + 17718866 TTAC
s cb4.chrX              10360494 4 + 21540570 TTTC
i cb4.chrX              I 1133 C 0
s caeRem4.Crem_Contig0   1882021 4 -  4500979 TTTC
i caeRem4.Crem_Contig0  I 18 C 0
s caePb3.Scfld02_0       3284252 4 +  4147112 TTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430759 4 +   591668 tttc
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     10919 0 -   141584 C

a score=143370.000000
s ce10.chrX              5023816  844 + 17718866  
s cb4.chrX              10360498 1015 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1882025  923 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold567     10919  995 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3284256  994 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   430763  809 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-3571.000000
s ce10.chrX              5024660 27 + 17718866 GAAA--TTTTATTGGGATTATGAGATTTT-----
s cb4.chrX              10361513 23 + 21540570 ------tttttttgtaaatttcagattct-----
i cb4.chrX              C 0 I 13
s caeSp111.Scaffold567     11914 19 -   141584 aaaatattttttca----------gtgat-----
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3285250 14 +  4147112 ------TTTTCTGAT---------GTTAT-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   431572 23 +   591668 ------tttttttgcgGTT-----GTTTCTCTGC
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1882948 34 -  4500979 I

a score=217.000000
s ce10.chrX              5024687 9 + 17718866 Gaaaataag
s caeSp111.Scaffold567     11935 8 -   141584 -aaaattag
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3285266 8 +  4147112 -ACCAATCG
i caePb3.Scfld02_0      I 2 I 3
s caeJap4.Scaffold17934   431595 9 +   591668 AATAActtg
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10361536 13 + 21540570 I
e caeRem4.Crem_Contig0   1882948 34 -  4500979 I

a score=25.000000
s ce10.chrX              5024696 11 + 17718866 -tttttaaaaac
s caePb3.Scfld02_0       3285277 11 +  4147112 -TTTTTATGAAC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   431604 11 +   591668 atttttgttgt-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10361536 13 + 21540570 I
e caeSp111.Scaffold567     11943  0 -   141584 C
e caeRem4.Crem_Contig0   1882948 34 -  4500979 I

a score=333.000000
s ce10.chrX              5024707 5 + 17718866 tatta
s caeJap4.Scaffold17934   431615 5 +   591668 tgtta
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3285288 0 +  4147112 C
e cb4.chrX              10361536 13 + 21540570 I
e caeSp111.Scaffold567     11943 0 -   141584 C
e caeRem4.Crem_Contig0   1882948 34 -  4500979 I

a score=0.000000
s ce10.chrX              5024712 500 + 17718866 tattatattttttaaaCTTTAGTTTTACAAAAAATTCCAAAAGAGAACTTCATATTCTCTCTCATCTCTTTCCCTCTCACTTAAACTCGCGCTCTGTCGGGCCGAGTTTATATTAATTTATTCATCTACACGTTTAAATATCATAACCGGTTATGTTTTTCTTATCATATCCTTTTTTTCCATGATGAATAAATTAATAAATCATATTCTTGACAATTTTATTGAAACAAAAACAGTTTTTTAAATAAAATATAAACGATTTTAGAGGCGCCACGGTTTCAAACTGATGCTACTTCAAAAAAAACTTGCAAATATTGTAATAATAATAACATATAGCATTTTGTGAAGTTTTGTCGTGATTGGTAAATTGATAAGCCATACACTTATGATACAGGACCATAATTCTTTCTAATCTATGAGGCGCTCAGTTTTAAATGAACACACCTCAAAAATTATATGGCCACATATTTTGACATTACAAAGATTTTCAAATAAACAAT
e caePb3.Scfld02_0       3285288   0 +  4147112 C
e caeJap4.Scaffold17934   431620   0 +   591668 C
e cb4.chrX              10361536  13 + 21540570 I
e caeSp111.Scaffold567     11943   0 -   141584 C
e caeRem4.Crem_Contig0   1882948  34 -  4500979 I

a score=484.000000
s ce10.chrX              5025212 8 + 17718866 TATTAAAT
s caePb3.Scfld02_0       3285288 8 +  4147112 TGTTGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   431620 0 +   591668 C
e cb4.chrX              10361536 13 + 21540570 I
e caeSp111.Scaffold567     11943 0 -   141584 C
e caeRem4.Crem_Contig0   1882948 34 -  4500979 I

a score=1762.000000
s ce10.chrX              5025220 3 + 17718866 TTT
s cb4.chrX              10361549 3 + 21540570 TTT
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   1882982 3 -  4500979 TTT
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold567     11943 3 -   141584 ttt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3285296 1 +  4147112 --T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   431620 0 +   591668 C

a score=118992.000000
s ce10.chrX              5025223 137 + 17718866 TCAGTTCGAGCATGCTTCAAGCGAGTTTCCCGACGCTCCATAGGAAACTATGCGCCGATAGCCGAATATCGTCGCACTGCTTTAACAATGTGTACGCAACACTGCATCATGGCAGCAGGAAACGGTCCAGAAGGGGT
s cb4.chrX              10361552 137 + 21540570 GAAGATCGTGGTTGTTTCAAACGAGTTTCCCGAAGATCCATTGGAAACTATGCTCCGATTGCTGAATATCGAAGAACAGCTCTCACAATGTGCACCCAACACTGTATAATGGCTGCTGGTAATGGAGCCGATGGAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1882985 137 -  4500979 TCAGTTAGAAGTTGCTTCAAACGAGTATCTCGAAGATCCATTGGAAATTATGCCCCGATTGCGGAATATCGTCGCACCGCTCTCACAATGTGTACACAACACTGTATAATGGCAGCTGGAAATGGCCCAGAAGGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     11946 137 -   141584 tcagttCGTAGCTGTTTCAAAAGAGTGTCTCGAAGATCCATTGGAAATTATGCTCCGATTGCAGAATATCGCCGAACTGCTCTTACGATGTGCACACAGCATTGTATAATGGCTGCCGGAAACGGACCAGATGGagt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3285297 137 +  4147112 TCAGTCCGAACATGTTTCAAAAGAGTTTCTCGAAGGTCTATCGGAAATTATGCTCCAATTGCTGAATATCGTCGAACTGCCCTCACAATGTGTACTCAACATTGTATCATGGCAGCAGGGAACGGTCCAGATGGGGT
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17934   431620 137 +   591668 tcAGACAGACAATGCTTCAAACGTGTTACGAGAAGATCTATCGGCAACTATGCGTCGATTGCCGAGTACAGAAGAACTGCACTAACAATGTGCACTCAGCATTGTATTATGGCTGCAGGAAATGGGCCAGGAGGGGT
i caeJap4.Scaffold17934 C 0 C 0

a score=520.000000
s ce10.chrX              5025360 9 + 17718866 TTGCTTTTT
s caeSp111.Scaffold567     12083 5 -   141584 ----aattt
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   431757 9 +   591668 TTGTTTTTT
i caeJap4.Scaffold17934 C 0 I 404
e caePb3.Scfld02_0       3285434 33 +  4147112 I
e cb4.chrX              10361689 0 + 21540570 C
e caeRem4.Crem_Contig0   1883122 0 -  4500979 C

a score=-435.000000
s ce10.chrX              5025369 3 + 17718866 TTT
s cb4.chrX              10361689 2 + 21540570 -AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1883122 2 -  4500979 -AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     12088 3 -   141584 tat
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3285434 33 +  4147112 I
e caeJap4.Scaffold17934   431766 404 +   591668 I

a score=-5398.000000
s ce10.chrX              5025372 26 + 17718866 TCATTT--AAGGCATCAAGTAAGTGCAT
s cb4.chrX              10361691 24 + 21540570 GTCATCTGAAGAtgt----ttaaaaagt
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   1883124 23 -  4500979 GCTTTC--AAGATTT---GGTGTGAAAT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold567     12091 26 -   141584 tttttc--attttgtctactcaataaat
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   432170 26 +   591668 ttgtaC--AGTACCTCAcacaattgaat
i caeJap4.Scaffold17934 I 404 C 0
e caePb3.Scfld02_0       3285434 33 +  4147112 I

a score=198989.000000
s ce10.chrX              5025398 369 + 17718866 -TTTTAGGGTTCCATTTGCAAAGCGTTCACCTACGAACTCGACAAACAGCTATGCAGACTTTACGACAATGATGGACACAAGGTAATTTTTTTCTTCTGAAACCACGCTGAAATTTTCAAATTTTGATTAAATTATTAAGATTTTGGGTAAACTTACCAGCTCAATTTTCAGATTCCTGCTGTGATTCATCCTATCATGGGAACTGACATTTTCTATAGAACATCTGACATGGGAGAATGTGCAGGCCCAATGAGTGGTCAGCATATGAATCCAAATTTTGTTAAACTGAATAATGGGAAAAACAGTCTGAAGAGCAGTGTCGATAAGAACAGAAACTTCAAAATCTCGGATTTGCCTAGTCCAACGTAA
s cb4.chrX              10361727 317 + 21540570 -TTC-AGGGTTCCATCTGCAAGGCATTTACTTATGAAGTCGAGAAACAACTCTGCAAACTTTATGATAACGATGGGCATAAGGTAACAGAAC---------------------------------AAttaaacttct-aaaattcgtATTTG--tatcaa------tttcagattccagCAGTGATCCATCCAATCATTGGTATCGACATATTTTATAGAACATCTGATATGGGAGAGTGTGCGGGACCAATGAGTGGTCAGCACATGAACCCCAATTTTGTCAAGCTAAACCACGGAAAGAATGATTTGAAACACAGTTTTGATAAGAA---------CAAGATATCTGATCTTCCAAGCCCAATGTAA
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   1883158 325 -  4500979 -TTCTAGGGTTCCATCTGCAAAGCTTTCACATACGAAGTTGAAAAGCAGTTGTGCAAATTGTATGATAACGACGGTCACAAGGTGAGTTACCT--------------------------TATTTTGAATGATCTgc---aaaacagttttc---------------tttcAGATCCCTGCTGTTATTCATCCAATCATTGGAATCGACATTTTCTACAGAACTTCGGATATGGGAGAATGTGCAGGACCCATGAGTGGTCAGCATATGAATCCAAACTTTGTCAAGTTGAATAACGgcaaaaatagtttgaaaaatacgTTGGACAagagttcaaatttcaagataTCTGATCTACCAAATCCTGTGTAA
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold567     12117 322 -   141584 -ttttaggGTTCAATCTGTAAAGCGTTCACATATGAAGTTGAGAAGCAACTATGCAAGCTGTATGATAATGATGGGCATAAAGTGAG--------------------------------TATTTAGTGG-------T-GGAATTCATGTAGATTTAAATG------TTT-AGATCCCTGCTGTAATTCATCCAATCATAGGAATTGACATCTTCTATCGAACATCAGACATGGGAGAATGTTCTGGACCAATGAGTGGTCACCATATGAATCCGAACTTTGTGAAGTTgaacaatggaaaaaatgatctCAAGAGAAACTTCGATAAGAATGCAAATTTCAAGATTTCCGATTTGCCAAACCCAACGTAA
i caeSp111.Scaffold567  C 0 I 35
s caePb3.Scfld02_0       3285467 327 +  4147112 -TTTTAGGGTTCAATTTGCAAAGCATTCACTTATGATGTTGAGAAACAATTGTGCAAACTCTTCGACAATGACGGGCACaaagtagg--------------------------------ttttttttttaattttct-agacCACAT-TAGA--GAAGTA------TTTCAGATCCCAGCTGTAATTCATCCGATTATTGGAATCGACATTTTCTACAGAACTTCTGATATGGGAGAGTGTGCTGGTCCAATGAGCGGACAGCATATGAATCCAAACTTCGTGAAGTTGAATCATGGAAAGAATGATTTGAAGAGAACTTTGGATAAAAACGCGAATTTCAAGATTTCCGACCTGCCGAACCCAACGTAA
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17934   432196 277 +   591668 ttttcagaactCAATCTGCAAAGCGTTCACCTATGAAGTCGAAAAGCAACTTTGCAAACTTTATGATAACGATGGTCACAAAATA------------------------------------------------------------------------------------------CCGGCCGTGATTCATCCAATCGTTGGAATCGACATCTTCTACAGAACGTCCGATACAGGCGACTGTGCTGGTCCCATGTCTGGTCAGCATTTGAatccaaactttttcaagctggataatggaaaaaatagtgTGAAGAATAATCTG---AAAAAGTCAGATTCTAGTGGCAAAGATCTTCCGAATCCAGCGtga
i caeJap4.Scaffold17934 C 0 C 0

a score=-240.000000
s ce10.chrX              5025767 3 + 17718866 -GTT
s cb4.chrX              10362044 3 + 21540570 -GTT
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   1883483 3 -  4500979 -GTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3285794 3 +  4147112 -GTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   432473 3 +   591668 gga-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     12439 35 -   141584 I

a score=464.000000
s ce10.chrX              5025770 5 + 17718866 GTTTT
s caeJap4.Scaffold17934   432476 5 +   591668 gtttt
i caeJap4.Scaffold17934 C 0 I 19
e caePb3.Scfld02_0       3285797 0 +  4147112 C
e cb4.chrX              10362047 31 + 21540570 I
e caeSp111.Scaffold567     12439 35 -   141584 I
e caeRem4.Crem_Contig0   1883486 0 -  4500979 C

a score=-25006.000000
s ce10.chrX              5025775 420 + 17718866 GGGGGCAAAAATGACAAATGTGAGCCTATTGTGTGGGTTTTTCCACAGATTTGTTGAAAAAATATAGCATATTTTCTCCGCGCTGATGTAAAAGTAATTACAAAATTTGGATAAGCAAACAATTTGTTTCAAAAACTCTAGCTAAAGGCTC-----ATTTT-ACAGAGTACGGCGTAATTATGACAACCCATTTTTAGAATCGTAACGCCTTAATAAAAGTAACTTGCACTTCCACTTTTATAACTCGCTTTTACCCTACTAGTAGTCTCAACTGTGTGTTAACGCTTTTAAAACCAGCCGCACATTCGTGTTCACAGTTCCTTCTGTGTTCACAGTTCCTTCGTACAATCATTCTTCCAGCTTA-AAACATTAAAAACTCTGAAAGCCTTTGTGCGATTGATTTTGAGATGCAGTTTCT-GTCTCCA
s caeRem4.Crem_Contig0   1883486 117 -  4500979 ----------------------------------------------------------------------------CTCAC-------------TAATAACATCATCT------------------------------------CAGATTTC----AACCT---------------GATGCTT----------GTCATAATTG--ATACCGTA-------------------------------------TCCAT--------------------------AACTCTAGAAgaac-----------------------------------------------------aacaatttttgattgag-gTACTGTAAAATTATTGA------------------------------GTTTGT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3285797 240 +  4147112 -------------------------------------GTTTTATACA-ATTTATT-----------CCATATATGACTTGCG-----------ATAAGTATATCATCCGT------------TTTGGTTCA------CTAGTAAAAGGTTTCTGAAATCCTCAGAGGTTATGGTGGAATACTTTCTCCTGTTCTTCAAAATTG--Gtgttgaaa-----------------------ttgataaataaCGTTCAT------------------------TATACTTTAGAATAGCtag-----------------------------------------ttttgtaaaaaacattttcaagtgTGTATGCACTAGGGTTTCTGA--------------------TAAGTAAACCGTTTTTCATTTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   432481  19 +   591668 I
e cb4.chrX              10362047  31 + 21540570 I
e caeSp111.Scaffold567     12439  35 -   141584 I

a score=369.000000
s ce10.chrX              5026195 11 + 17718866 TCCATCTGCAA
s caePb3.Scfld02_0       3286037 11 +  4147112 TTCATCTTCTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   432500 11 +   591668 tttttttgtta
i caeJap4.Scaffold17934 I 19 C 0
e cb4.chrX              10362047 31 + 21540570 I
e caeSp111.Scaffold567     12439 35 -   141584 I
e caeRem4.Crem_Contig0   1883603  0 -  4500979 C

a score=140609.000000
s ce10.chrX              5026206 221 + 17718866 TTTCAGAAACGATCAGTTCTTGCAAAAAGCCAAGGCAATGTCTTCTCCAATGTAAG---TTTTGTTTATGAAAATGTTTA---------TCCATTTACCCAAAACTT----------------TCTATATTTAGGGTGAGAATGGAGGATATGGATGAAGTCTTGAGATCAAAGTTGAGAGGAGAAGAATCTCTTGTCCCGATGTCGCAAAAAGATACCGAAGA---GGGAAAGGAGTTGGATAAGACCG----GT
s cb4.chrX              10362078 213 + 21540570 TTGTAGATCCGACCAATTTATGCAGAAAACAAAAGCGATGGCTGCCCCGATGTAAG---TTTC--------------------------TCAACTTCCGCAGAAGTTCCAAGTCTC-----------TTTACAGTGTCCGAATGGAAAATATGGATGAAGTTCTGAGATCAAAATTGAGAGGAGATGATGCGCTAGTGCCGATGTCACAAAAGGATACGGAAGA---AAGGAAGGAGTTTGAACAGACCGGTGTGT
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   1883603 225 -  4500979 TTTCAGGAACGACCAGTTCATGCAGAAGACAAAAGCCATGGCTGCTCCAATGTAAG---TTTCG-------------------------GTTATTCTTGCAAAacttcaagttttcaattttatttatttataggGTAAAAATGGAGGACATGGACGAAGTTTTGAGATCAAAGTTGAGAGGAGAAGATGCGCTTGTCCCGATGTCACAAAAAGATACGGAAGA---GAGGAAGGAGTTTGAAAAGACCGGTATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     12474 234 -   141584 ttacagaagTGATCAATTCATGCAGAAGACAAGAGCTATGTCTGCACcaatgtaag---tttttat--------gTTCTACT-------TTAGTATTTGCGACATTCAAACCACTCAACTCT-TCTATTTATAGAATGAGAATGGAGAATATGGATGAAGTATTGAGATCAAAGTTGAAAGGAGAAGATGCGCTTGTCCCGATGTCACAAAAAGATACGGAAGA---TATGAAATTGTTGGAAAAGACCGGTATGT
i caeSp111.Scaffold567  I 35 C 0
s caePb3.Scfld02_0       3286049 245 +  4147112 TTCCAGAAGTGACCAATTCATGCAGAAGACAAAAGCTATGGCTGCCCCCATGTAAg---tttcttttccg----tttttaccTCATCTGTTAGATTTTTCTTTCCTCA----TCTCAATTGTATCCATTTTTAGAATGAGAATGGAGAACATGGATGAAGTTTTGAGATCAAAGTTGAGAGGAGAAGATGCGCTTGTCCCAATGTCACAGAAGGATACGGAAGAAAGCaagaaagattttgaaaagaccGGTATGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   432511 226 +   591668 tttcagAAATGATCAATTCATGCAAAAGACACGCGCCCTAGCCTCTCCAATGTAAGAAATCTCTTCTATAT------------------TTATCTTTTTATGTAATTGAA-----CATTTGTATTTATACGCAGACTAAAAATGGAAAGTGTCGATGAAGTGTTGAGATCAAAGTTGAGAGGTGAAGATGCCCTGGTTCCAATGTCGCAAAAAGATACGGAAGA---GAAAAAGGAGATGGAGAAAATCGGT----
i caeJap4.Scaffold17934 C 0 I 560

a score=-823.000000
s ce10.chrX              5026427 130 + 17718866 TAGTGTTTCCGT-TTCC-----------GATGATCCCA---ATGATGCTAGTTCTTTTTCAT---------TCTATTCTTAATATTGAATTCATTGAAA----TTCTCCGCTTACTTCCCTCTTTCCCAAAACAGATTTACAAAGATC-TCC---CAGTAGA
s cb4.chrX              10362291 123 + 21540570 TAtcattttcgatttctaaatTGGAAAAGATGAACCCAGTAATGATGTCAGT-------------------TCTATTTTTAACTT----------GGAA----TTTCCCAAGAACTCTCCCCAA--CTTCCTTAAATCTACTAACTAA-CAT---CTACGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1883828 117 -  4500979 TATCGTTTCCGTCGTAT-----------GTTGAAC------ATGATGTCAATA------------------TCTATTTCAAGCGTCGAGTTC-TAAGAA----TTCCCCATTTACTCGCTCCCA--CTCATATATGTATTCTAAATAGCCAT---TTACGag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     12708 116 -   141584 TATCGTTTCCGTGTTCT-----------CAGAAAT------GTTGTGAGGATtaaga---------------atatttttaatattgaATTA-TAAGAA-------TAGGTTTCTTTCGTTACC--CCTACTCAAATTTACAAAGTAG-CAT---CTTTGAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3286294 142 +  4147112 TATCGTTTCCGT-TTCT-----------ATTGAAA------GTGATGCTGATGATGATGTCAGggcaattttctatttttgatgttGAATTC-TAAGAAGTCCCTTTGCTTTTACTTCCTTCCCCTCCTACTCGAATTTACTAAGTAG-CATCTCCTCCAAa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   432737 560 +   591668 I

a score=180257.000000
s ce10.chrX              5026557 191 + 17718866 GCACAACAAAACAAAACACGAGAAAA---AATGCT----TCAGAAAACGG---CCCATTGAAATGCAAGACATCGAGTGGATATTACGTGGTTGTCGGAAACGAGATCGTTTTGCCGATAAGCGGCGGAGACGTGCAAGTGTATAATGAAGTGGAGCAGGGAGATTGTGCCAAATACTGCAGTGAGAACAAAGTGAGAACA
s cb4.chrX              10362414 185 + 21540570 AAAACACAAGACTCAT-------------CCTTTTTTGGTCTACAGACAG---CCCATTGAAATGCAAAACATCCAGTGGATATTACGTCGTCGTCGGAAACGAGATTGTTTTGCCGATAAGCGGCGGCGATGTGCGAGTGTATAATGAAGTGGAGCAGGGAGATTGTGCCAAGTATTGCAGTGAGAACAAAGTGAGAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1883945 181 -  4500979 ccaacaaaaaagaaaa-------------catttt----tctgcaGATGG---CCCATTGAAATGCAAAACATCCAGTGGATATTACGTAGTTGTCGGAAACGAGATCGTTTTGCCGATAAGCGGCGGAGATGTGCGGGTGTATAATGAAGTGGAGCAGGGAGATTGTGCCAAGTACTGCAGTGAGAACAAAGTGAGAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     12824 194 -   141584 GCcgcagaaaacaaaatgcaaaaaagcGATTCTTT----TCTACAGATGA---CCCATTGAAATGCAAAACATCAAGTGGATATTACGTAGTTGTCGGAAACGAGATCGTCTTGCCGATAAGCGGCGGAGATGTCCGAGTGTATAATGAAGTGGAGCAGGGAGATTGTGCAAAATACTGCAGCGAGAACAAAGTGAGGACA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3286436 197 +  4147112 gccaaaacaaaacaaaaacgcaaaaaaagcttctt----tCTACAGAGGAAGGCCCATTGAGATGCAAAACATCAAGTGGATATTACGTGGTTGTCGGAAACGAGATCGTTTTGCCGATAAGCGGCGGCGATGTCCGAGTGTATAATGAAGTGGAGCAAGGAGATTGTGCCAAGTATTGCAGTGAGAACAAAGTGAGGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   433297 187 +   591668 ---gcacaaaaaccaaaaaaaaaacgca-catAAT----TC---AGACGG---GCCCTTAACATGCAAAACGTCAAGTGGATATTACGTAGTTGTCGGCAATGAGATCGTATTGCCGATAAGCGGCGGCGATGTGCGAGTGTATAATGAAGTGGAGCAAGGAGACTGCGCCAAATACTGCAGTGAGAACAAAGTGAGGACA
i caeJap4.Scaffold17934 I 560 I 37

a score=3269.000000
s ce10.chrX              5026748 34 + 17718866 TTATAATTTGTCTTCC--TCTCTCGTACATGCAATG
s cb4.chrX              10362599 31 + 21540570 ACATCATTTGTCTTTTTGCCTTCTGCA-GCG----G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1884126 35 -  4500979 TGATCATTTATCTTGCCCTCTTTCCCA-ATGTGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     13018 32 -   141584 TGATCATTTGTCTTG---TCTCCTACATCTGCAAC-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3286633 34 +  4147112 TGATCATTTGTCATGC--CCTTTTGCATATGTCTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   433484 37 +   591668 I

a score=159754.000000
s ce10.chrX              5026782 170 + 17718866 TATGTTGTTTT-AGGGTCCCGACGGGTCGACTATCAACTGCCGCTCTTTAAATTATTTCCCTGTGGAGAAAAAGTGTGAACTATATGGAATTCTCGCAGAGCCACACGGTTCCGGAAAACTTTTGGAAAATGAGAAAGTGATTTATGCAGAGAAATTTTGCTTGCCAGGT-A
s cb4.chrX              10362630 168 + 21540570 ---CTTGTTTT-AGGGTCCCGACGGATCTGCCATCAGTTGCCGCTCGTTGAACTATTTCCCGGTGGAGAAAAAGTGCGAGTTGTATGGAATTCTGGCCGAGCCACATGGCTCTGGAAAATTGCTGGAGAATGAGAAAGTGATTTATGCGGAGAAGTTCTGTTTGCCAGGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1884161 168 -  4500979 ---GTTGTTTT-AGGGTCCCGATGGATCGTCAATCAGTTGCCGCTCTTTGAACTATTTCCCCGTGGAGAGGAAGTGCGAGTTGTATGGAATATTGGCAGAACCTCATGGTTCAGGAAAACTTTTAGAGAacgaaaaagttatttatgcAGAAAAGTTTTGTCTACCAGGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     13050 167 -   141584 ----TTGTTTTCAGGGTCCCGATGGATCGGCTATCACATGCCGCTCTTTGAATTATTTCCCAATGGAGAGAAAATGCGAGTTGTATGGAATACTAGCGGAACCACATGGATCCGGAAAACTACtggagaatgaaaaagttatttatGCGGAAAAGTTCTGTCTTCCAGGt-a
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3286667 167 +  4147112 ---GTTATTTT-AGGGTCCCGATGGATCTGCTATCAACTGCCGCTCTTTGAACTATGTCCCCTCGGAAAAGAAGTGCGAGTTGTATGGAATATTAGCAGAACCACATGGATcaggaaaacttttggaaaacgaaaaagttaTTTATGCAGAAAAGTTCTGCCTTCCAGGT-A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   433521 170 +   591668 TCTCTTTTTCT-AGGGTCCCGACGGGTCTGTGATCAACTGCCGCTCTTTGAATTACTTCCCAATGGACCGGAAGTGTGAGCTGTATGGAATTCTGGCAGAGCCGCATGGAACTGGAAAGCTTTTGGAAAATGAAAGAGTTATCTACGCTGAAAAGTTTTGTCTTCCAGGT-A
i caeJap4.Scaffold17934 I 37 I 35

a score=-2596.000000
s ce10.chrX              5026952 3 + 17718866 AC-A
s cb4.chrX              10362798 2 + 21540570 GT--
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1884329 2 -  4500979 AT--
i caeRem4.Crem_Contig0  C 0 I 60
s caeSp111.Scaffold567     13217 3 -   141584 ata-
i caeSp111.Scaffold567  C 0 I 35
s caePb3.Scfld02_0       3286834 2 +  4147112 AT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   433691 35 +   591668 I

a score=0.000000
s ce10.chrX              5026955 3 + 17718866 AAT
e caePb3.Scfld02_0       3286836 0 +  4147112 C
e caeJap4.Scaffold17934   433691 35 +   591668 I
e cb4.chrX              10362800 4 + 21540570 I
e caeSp111.Scaffold567     13220 35 -   141584 I
e caeRem4.Crem_Contig0   1884331 60 -  4500979 I

a score=-18306.000000
s ce10.chrX              5026958 396 + 17718866 GTTGAAATCAttaaag------ataaagtagactagttcagatt-----------------------------ttctt-taaactgtattaaatggaccatattgctcaaatataattgtaaaaaaaattaaa-----------taatttta--taatgatttttccaatttttcaacagaaaacttataga--aagttattattgaattacttgaaattaaaataaatgatttatgattttc-------ctgctaaaattatcggggtttcgtgcttttcttcctc-----gatacttcaattgaa--aATCGAAAAAGAATTGAAAATGCAACAAAGaattttaaaaaatttaaatttcaacctataaattttataaaaaaaCC--------------GCGAAATT------------GCAGAAATTTTAATC---GTTCATTTACGTTTTTTTTGTA----------ACaaaatttaaaaa---aaatataattaaaaaC
s cb4.chrX              10362804 474 + 21540570 TTTCAGAGCATAGAAAAGTCATATGAAGT-------TTCGGGTTCATGGAAGAACTCGAGTCTAAGTTTTTAGACatgaaaaatcataataaCAAAAAGGATgtgttctaatagaagcccaccataTTTCGGGCTGAAATATCTTGGTTTCgttaaaagatatcgaaagtttgtcaactgataaagtgctGGCAATTTTA----CGAAAAACGTAAAACc-agttgacgcatttttgatatcttacgatgcaaccgagataa--------ttgtgctcaaaatgCACGCATAGAGGGTTTTATCAGAGTATTC-ACAAAAACTTATAAAAGTAGTA---TACTGTATTAAAGCCCAATGcgacct-----attttttcagaaaattttagcaGGAATCcagcaaaatttcgaaagaaatcGTCAGAGTTTCAAAtaacttttgttttctttttcagtacATCTAGACCACACGATGCCCCAATGTACAAATTTCCTTGAAAAC
i cb4.chrX              I 4 I 24
s caePb3.Scfld02_0       3286836 276 +  4147112 -TTGAACGCccaaa--------atgaatt-------attgagtt-----------------------------gtatg-aaaattataa----------------ttcGAATGAA-----------------------------TGGTTTCA---------ATTTAAAATCTTATGGTCGGTATTG--------ATGTCA----GGAATTA-----------------GGACtctggattttt-------caaacaaaa------------cgtGCTTGAAATGTCT-----GAAGATTTCATGGAATCAatc---------------------------attttacaaaaatccaaaattaaaC-----CGTTTATCGGAAAACc---------------caagattttgagaaaa---gtatgattttgaaac--------ttttcaacttca---------------acTATGTTTTCAGGCA-ATAGGTATTCGACAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   433691  35 +   591668 I
e caeSp111.Scaffold567     13220  35 -   141584 I
e caeRem4.Crem_Contig0   1884331  60 -  4500979 I

a score=-911.000000
s ce10.chrX              5027354 33 + 17718866 CAGAAATGTTTTAAATTTTTTAAACAGGTATAT
s caePb3.Scfld02_0       3287112 18 +  4147112 TTGA------------CCTCAACACAGTT---T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   433691 35 +   591668 I
e cb4.chrX              10363278 24 + 21540570 I
e caeSp111.Scaffold567     13220 35 -   141584 I
e caeRem4.Crem_Contig0   1884331 60 -  4500979 I

a score=-897.000000
s ce10.chrX              5027387 25 + 17718866 TCGATAGTT----------TAACTGACGTTACTAT---
s cb4.chrX              10363302 19 + 21540570 -------------------TGAATAATATAACTATTTG
i cb4.chrX              I 24 C 0
s caePb3.Scfld02_0       3287130 35 +  4147112 TTGCTAGTTCTAACGCCTGTAAACATCCCTATTAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   433691 35 +   591668 I
e caeSp111.Scaffold567     13220 35 -   141584 I
e caeRem4.Crem_Contig0   1884331 60 -  4500979 I

a score=657.000000
s ce10.chrX              5027412 3 + 17718866 TTT
s cb4.chrX              10363321 3 + 21540570 TTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1884391 3 -  4500979 TTG
i caeRem4.Crem_Contig0  I 60 C 0
s caePb3.Scfld02_0       3287165 3 +  4147112 TCT
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17934   433691 35 +   591668 I
e caeSp111.Scaffold567     13220 35 -   141584 I

a score=280114.000000
s ce10.chrX              5027415 382 + 17718866 TTCCAGAATCCCCATTCGTCTGCCAGAACGACGAAATTTTCATTCTCCACGTTCAAAAAACTCTCTCAAAACGTCGCCGTATAACCACAAAGGCCGCCAGCTCAATAACCGACTGCCTTCGAAAATGTCTCGAGCAAGATGATTGCAGAG-TAATTA-------TCATTTTCCTCGTA--GCTCGCTCAAAAATCCCCACGCATT-TAATTT-CAGAGCTCTGTTTACATTTCAAATTCCAAGAAGTGTGAACTGCACAATGTTGACGTGTCAACTGGTGATTACGCACGCGACTCTGATCGAGAAACGGTGCTCATCGAAAATGGATGTAGAAGGAAAGGTGTTACTCCGAAAAGGAAGGATAGCCCATCACTTTCGGTGAG---A--------CAGAAATAGT
s cb4.chrX              10363324 374 + 21540570 TCCCAGAATCTCCTTTCGACTGCCAAGAAGACGAGATTTTCATTCTCCACGTGCAAAAAACACTCTCGAAGCGTCGACGTGTTGCAACAAAATCTGCAACATCAATTACCGACTGCCTACGCGTTTGCCTTGAGCACGAAGAATGCAGGG-TAATAAGA---CCT---------------TATTGCTCAAACACCCACACATTCTATAATTT-CAGAGCTCTGTTTACACGTCGTCTTCAAAGAAATGCGACCTTCATAATGTTGACGTCTCTTCTGGAGACTATGCACGAGATTCTGATCGGGAAACTGTGCTCATTGAGAATGGATGCAGAAGGAAAGGTATGAATCCAAAACGAAGGAACAGCCCGTCGCTTTCGGTAAG---A--------CATAGACCAG
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   1884394 391 -  4500979 TTTCAGAATCCCCATTCGTTTGTCAAAATGATGAGATTTTCATCCTCCACGTCCAGAAAACCATTTCAAAGCTTCATCAAATTGCAACCAAATCTGCGGGCTCAATTACCGATTGCTTACGCGTATGCCTAGAGCATGATGATTGCAGGG-TAATTAGC---CTTCATATTTTCCCCACGCATTGTTCAAAGA-TCACACGCCCTATAATTT-CAGAGTTCTGTTTACACATCGTCTTCTAAGAAATGTTACCTACATAATGTTGATGTTTCCTCTGGAGATTACGCACGTGATTCTGATCGAGAAACCGTGCTCATTGAGAATGGATGTAGAAGGAAAGGTGTAACTCCAAGGAGGAAAAACAGCCCGTCGCTTTCGGTGagtgaa--------caaaaaaaaa
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold567     13255 363 -   141584 TTGCAGAATCTCCATTTGTGTGTCAAAACGACGAGATATTCATACTTCACGTCCAAAAAACCCTCTCAAAGCGTCGGCGTATTGCAACCAAAACTGCAACCTCAATAACAGATTGTCTCCGAGTATGCTTGGAGCATGACGATTGCAGGG-TAATTA-------------CCCTC-----TATTGCTCAAAAA-CCCCACGCTTTATAATTT-CAGAGCTCTGTTTACACCTCGTCTTCTAAGAAATGCGACCTTCACGATGTTGACGTGTCTTCTGGTGATTATGCACGGGACTCTGATCGAGAAACAGTGCTCATTGAGAATGGGTGCAGAAGGAAGGGTGTAAATccaaagagaaagaatagcCCATCACTTTCTGTAAG---A------------------
i caeSp111.Scaffold567  I 35 C 0
s caePb3.Scfld02_0       3287170 392 +  4147112 TTCCAGATTCCCCATTCGAGTGTCCCAACGATGAGATCTTCATCCTTCATGTTCAGAAAACACTTTCAAAGCGTCGGCGGGTTGCAACCAAAACAGCTAGCTCAATTACAGATTGTCTTCGCGAGTGCCTTGAGCATGATGATTGCAGGG-TAATTAGT---CTTCATATTTCTC-----CATTGCTCAAAGA-TCCCACGCCTGATATTTTCCAGAGCTCTGTTTACACCTCGTCTTCTAAGAAATGCGACCTTCACAATGTTGACGTGTCATCTGGAGACTATGCACGTGATTCTGACCGAGAAACCGTGCTCATTGAGAATGGATGCAGACGACAAGGTGTTAGCCCAAAACGGAAGAATAGGCCGTCTCTTTCGGTAAG---AGAGACGCTCAAAATACAA
i caePb3.Scfld02_0      I 2 I 3
s caeJap4.Scaffold17934   433726 386 +   591668 TTTCAGAATCACCATATGTCTGTCAAAACGATGAAATATTCATACTGCATGTCCAGAAAACAATCTCTAAACGGAGACGTATTGCTTCAAAAACCGCTAGCTCAATTACAGATTGTCTCCGATTGTGTCTGGAGGACGAAGATTGCAGGGTTCGTTAGAATGCTTTATAATCGTTT----CACGCTTCAACGA-TCCCAA----------TT-AAGAGTTCCGTTTTTACATCTGGTTCCAAAAAATGCGACCTTCACAATGTCGACGTTTCTTCCGGCGATTATGCCCGTGATTCAGACCGGGAAACAGTGCTCATTGAAAATGGATGTCGACGAAAGGGTGTGAAGCCGAAGAGGAAAAACAGTCCGTCGCTTTCGGTAGG---TTTCGCTATCAAAGAAATA
i caeJap4.Scaffold17934 I 35 C 0

a score=-2992.000000
s ce10.chrX              5027797 21 + 17718866 AATCACAGTTTTAAGAACGCG
s caeRem4.Crem_Contig0   1884799 14 -  4500979 CATCACAACC-------agct
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold567     13618 14 -   141584 CCTTCCAATC-------CACT
i caeSp111.Scaffold567  C 0 I 13
s caePb3.Scfld02_0       3287565 14 +  4147112 CATCACATCC-------CCCT
i caePb3.Scfld02_0      I 3 I 11
s caeJap4.Scaffold17934   434112  9 +   591668 ---AAGAACT-------CA--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10363698 38 + 21540570 I

a score=196920.000000
s ce10.chrX              5027818  933 + 17718866  
s cb4.chrX              10363736  975 + 21540570  
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   1884813 1093 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold567     13645 1016 -   141584  
i caeSp111.Scaffold567  I 13 I 91
s caePb3.Scfld02_0       3287590 1058 +  4147112  
i caePb3.Scfld02_0      I 11 I 2
s caeJap4.Scaffold17934   434121  808 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-21963.000000
s ce10.chrX              5028751  54 + 17718866 GAGGAAGGGATAAAGTC--------------------------GCCT-----AAT----GTTATGGT------G------CATCTATATGTCATA-------------AGTACC
s cb4.chrX              10364711  76 + 21540570 ---------aaaaaatt---------ttcaa--caaagtCAAACCCCG----GAA----ATTGGATT-TGTAAG------TTACAAATTGTAACAA---ACTTTTCCCAAAGCC
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1885908  82 -  4500979 GGGTTTGGgagaaaagt---------ttcaattcaAATGTGATGTctgaggaaaa----attgaattgcgAGCG------TTTCTATACGTCACA-------------AAAACC
i caeRem4.Crem_Contig0  I 2 I 14
s caePb3.Scfld02_0       3288650 106 +  4147112 GTATAACGGATAGAATTTATGAAATGTTGAACTCAAATGTGATGTCT-----GACGAGAATTGAAttgagagcaaaaaatgtACTGGATTTCacgt---ttttgaaacgaaaCC
i caePb3.Scfld02_0      I 2 I 22
s caeJap4.Scaffold17934   434929  48 +   591668 --------------------------------------------------GCAAA----ATCAAATT------T------ATAtaacatttttcatttctctttACTTATATCC
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     14661  91 -   141584 I

a score=192416.000000
s ce10.chrX              5028805 418 + 17718866 --AAAA----ACTTACTTTTTTAATATAAACCATTGAACGGAAGACAAAGTAGATGACAACGCCAAGAATCAGAAGGCACAAGAGCACCATGAGAGCAAGAAGCTCATTGCGAAGGGAGCTCGCCTCTGCAACATCAGCAGAATTTAGATTATCAGTG---------------AC---CTCCATCAACTT---------CCCAGCGGTTATGATGGTTTGAGTAGTTGTCAGTTTTAAAGG---------GACCGCATGAGTGGTGAGTA---CTGGG---GGAGAAACAAGATGCATTAGACTCTGCTGA---------GTTATGCGGACCCGGGACATT-----GAGGTGATT--------AAGGAAGACAGCGAAGGAAGGTGAGTTGCCCACACGCTATCTTCTCTTTTTGCCAGT----------GGAAAGG--------CGAAGATCATTGAGGAAAGATAATGGGATGGGATGGGGGCCTAACAC-TTTGTTTTTCTCAT
s cb4.chrX              10364792 436 + 21540570 ---AAA----ACTGACCTTCTTGATGTAGACCATTGAGCGGAAGACGAAGTAGATGACGACACCGAGAATCAGAAGGCACAAGAGTACAGCCAAAGCGAGAAGCTCATTGCGAAGAGCGCTAGCTTCTGGAATATCATCAGGTTGTACGGTAGCATTC------------AAAGCTTTTTCCAGGGTCTCCATAGT---CGTCGTGGCTATGAAACTTTGACGAGTTG------TCAGCGG---------GACCGCATGAGTTGTGGGAATACGAGAGGTAGGAGATGAGAGACCCATCAGACTCTTCTGC---------GTTATGCGGACCCGGGCCATT-----GACGTGATTAAAGATGGAAGGGGGTAGGTGAAAGATGAAGGAAAA-GAGGACTCTATCTTCTTTT-GAGCCAGT----------TAAA-----ATTGAATGAAGATCATTGAGAGAAGATAATAGA--GGGA-AAGAGAGACGATTGGTTGTTTTTCGTTT
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1886004 431 -  4500979 --TAAA----ACTAACCTTCTTGATGTAAACCATTGAACGGAAGACGAAGTAGATGATGACTCCGAGAATGAGAAGGCACAAGAGTACCATCAAGGCGAGAAGCTCATTGCGGAGAGCGCTTGCCTCTGTAATATTATCAGGTTCCATGGTaccattt---------ttgaaaga---ttccATTAATTTTGTTGG---CGCAGCGGTCAGAATAGTTTGAGGGgttgtcattttcaaaga---------aaccgCAGGAGTTGTAGAAATACGAGAGGTTGGAGAGGCAATACGCATCAGCGTCTTTTGT---------GTTATACGGACTCGAGACATCAGGGAGAGGTGATT--------AAGGGGGTAGGTGAGAG------------GGCCACTCTATCTTCTCTC---TTTAGT----------TGAAAAGCTATTGAGTGAagatcaatgaaaaaatataataga--gGAG-GAAGGAAAGgaat-cttgtttttcattt
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold567     14752 446 -   141584 --AAGA----ACAAACCTTCTTGATGTAGACCATTGAACGGAAGACGAAATAGATGATGACTCCAAGAATCAGAAGGCACAAGAGTACCATCAAAGCAAGAAGCTCATTGCGAAGAGCACTGGCTTCTGTAACATCCGCAGATTCAGAAATATCAGTCAGATTTTGTTGCAAAGT---CTCCATTATCTCAGCCGG---CGCAGTGGTTATGATAGTTTGAGAGGTTGTCAGTTTGAAAGG---------AACCGCATGAG---TTGAAG---GAGGGGTCGAAGAAGCAAGACGCATCATATTCTTATGT---------GTTATACGGACCCGGGACATTA-----AAGTGAtt--------aaagaagagaaggcgaatgagagagagg-ggCCACTCTATCTTCTCTC---GCCAGT-----GCAGTTAAAATGCGATTGAGTGAAGATCATTGAAGAAAGATAATAGA--GGGGTGAAGGAtaagatt-tttgtttttcgctT
i caeSp111.Scaffold567  I 91 C 0
s caePb3.Scfld02_0       3288778 437 +  4147112 --ATAA----ACTAACCTTCTTGATGTAGACCATTGAACGGAAGACGAAGTAGATGATGACTCCGAGAACAAGAAGACAAATGAGAACCATCAAAGCAAGAAGCTCATTGCGAAGAGCACTTGCCTCTGTAATATCACCAAATTCAGAATCATCAGTGATAgctttttccaaagt---ttccatCAACTTGGCAGGGGTAGTAGTAGTTCTAGTAGTTTGAGTGGCTATCAGTTTCACTGG---------AGCCCCATGAGTACTAGAAA---AGGAGGTAGGTGAAGCGAGGTCCATCAAATACTTCTGA---------GTTATGCGTACCCGGGACATCA----GGGGTGATt--------aaagaaatagagaagaa-------------gCCACTCTCTTTACTCCC---GCCagtagacagaaaaaaaaacg-aatggagTGAAGATCATTGAGAAAAGATAATAGA--GAGGttaga--------t-tttgtttttcgttt
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17934   434977 399 +   591668 AAAAAACCTCACTGACCTTTTTGATATAAACCATTGAACGGAAGACAAAGTAGATGATCACTCCAAGAACCAATAGGCACACAAGAATCATCAAAGCGAGAAGCTCATTGCGAAGAGCACTA---TCTGCAACAGGTTCAGGAGTCATAGTAGTAGAA---------GCCATCAT---TTCCAAAATCTTGGTGGA---AGCTTCAGTGATAATAGTTTGAGGGGTTGTCAGTTTGAAAGATGCTACTCTAGCCGCGTGGATGCGTGGGA---TAGTGGTGGCAGTGGCGAAACGCATAAGATTGTGCTGAGAGCCGGAGGTAATGCGAACTCGAGCCATCAAG--GTGGTGATT--------ATTG-------------------------GACAAATCTCT-TACTCTG---GCTCTC-------------------------------TCTTTCAAGAATGA-GATAGA--AAGA-------------T-TTTGTTGTTGTGTT
i caeJap4.Scaffold17934 C 0 I 35

a score=10573.000000
s ce10.chrX              5029223 33 + 17718866 TT--------------TCACTTTTCTTTTTGCTCG---GGAATTATATGA
s cb4.chrX              10365228 28 + 21540570 CA----------------------CCGCCTGTTGGCACGGAAACATATGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1886435 39 -  4500979 tg-----------ctctttttcttccgcCTGTTGGCACGGAAACATATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     15198 39 -   141584 TT-----------ACACTGCTTTACCGCCTGTTGGCACGGAAACATATGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289215 50 +  4147112 tcttccccTGGCGGCTCTACTCTTCCGCCTGTTGGCACGGAAACATATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435376 35 +   591668 I

a score=80758.000000
s ce10.chrX              5029256 128 + 17718866 CGGGTGATGAGGCC----------GAGGCAAAGCA----ATTCGAGAA-CTCTGGAACTCACCGTTTCCGTTTTTGATTAAGTTGAAGTTCATCATTTCCTCCTGGGCGTCCGGATGGTCAACCATGTCGAAGAGCTGAAAAT---
s cb4.chrX              10365256 119 + 21540570 CGCTAG---------------GATGAGATCTGGcg------tggaaaaaaagaagggctCACCGTTTGCGTTCTtcacaaaattgaagttcaTCATTTCTTCCTGAGCGTCCGGGTGATCAACCATGTCGAAGAGCTGAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1886474 138 -  4500979 CGgaagaagagatgga--aaagatgaagaaaagcaatttgtaagaaaaaaatgagtgcTCACCGTTTCCGTTCTTGACGAAGTTgaaattcatcatttcttcCTGGGCGTCCGGGTGATCAACCATGTCGAAGAGCTGAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     15237 130 -   141584 CGTAGGATGGggtg----agaaaagagaacaagtG----GTAGGAGGC--TTTAGAACTAACCGTTTCCGTTCTTAACGATGTTGAAGTTCATCATCTCCTCCTGGGCGTCCGGGTGATCAACCATGTCGAAGAgctgaa------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289265 136 +  4147112 CGGGTGATGAGGcggaatggagaaaaaaacgagcgtgatgtagaaaaa----aaaaactaaccgtttCCGTTCTTCACGATGTTGaagttcatcatttcttccTGGGCGTCCGGGTGATCAACCATGTCGAAGAGCTGGA------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   435411 125 +   591668 CCGAACATGTGACG-------GACGCaaatgattg-------gaaaaa----tatcaCTCACCGTCTCCGTTTTTAACGAAATTAAAGTTCATCATTTCCTCCTGCGCGTCCGGATGATCAACCATGTCGAAGAGCTGAA---AAT
i caeJap4.Scaffold17934 I 35 I 38

a score=-43887.000000
s ce10.chrX              5029384 193 + 17718866 CAATGATTTTATGTTTCTGGCACACCTGATTTGAATTAAAACATATGAAAATTGTACATTTAGTTTATTTAAAAAGAGAGTATAACCTGTTTGGAATA--------ATTAAACCTTATTTCTATGCTGATGTAAAAATGACTAAATATCGTAATAAAAATTGTGTGGCACATTATTATTTTAA---------GTCAAAAAGCCGTAAAAA--------------------
s cb4.chrX              10365375 103 + 21540570 ---------------TTCAAGAGGTTGGGTTTT---------TGGTGGAGGTTG-----TGAGATTTctcata----------------tttgaaatttccttaGAATCTAAc--------------------------attacacattttt----------------------tttt--------------tgcaaaagatCGTGAGAA--------------------
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   1886612  99 -  4500979 --ATAAT----CGTGTTTGAAAGGCTGAGAATG---------TCAGAAATGATAG--ATTGagtattcagaaa----------------tttgatatt--------AAATGAA--------------------------ATCTCACACTTT--------------------------------------------GAAATATTGTGAGAA--------------------
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold567     15367 100 -   141584 ---------------------------------------------------------atgaagaattc---------------------ttTGAACTA--------TGAACACC---------------------GATGACCGTATGATTCTAAGGA--------Gacatgtttttttccgaata-------agTACAATTCTGTGGGAATAT-----AAA---GGAGAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289401 108 +  4147112 ------------------------------------------------AAATTAC-CATTTGGATTTG---------------------CTTGACATT--------AGGAAAC--------------------------ATTATATGGTTTTGAGA------------------CTTTTGGAATAAGGAAGGAGTACAAAACcgtgagaatttttttgaaatcgtgaGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435536  38 +   591668 I

a score=-18999.000000
s ce10.chrX              5029577 126 + 17718866 CACATTTTGCACCTATTTTTTATATCCAAATTCGAAACAAATTGTTCCATAGTTTTTTGAAAGTTTTAACACTATATCAGTAGTTTTCAATTTTTCCCCACTGGCCGTACACTTCATTTATAAACT------------
s caeRem4.Crem_Contig0   1886725  81 -  4500979 -------TTCTCCTAtttttt---tGC-----------------TGAACTA-T--------AGATGGAAAACAAAAGCTGTGTTGTTCGAATTC-------------AAGAGTTCACTTCCTCAGTGATA--------
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold567     15467  62 -   141584 ------------CTGTATGAT---TTC-----------------TCACATG----------ACTTGGGAAATTCTA-----------TGAAT-----------------------AACTAGTCAATGATCAGTAGCCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289509  62 +  4147112 ------------ATGCTTTAT---TCCACCT-------------TCACATACT--------ACTTTCAAGAACAAA-----------TGACT-------------------------CTGGAAGATGCTCA----CGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435536  38 +   591668 I
e cb4.chrX              10365478  29 + 21540570 I

a score=18944.000000
s ce10.chrX              5029703 208 + 17718866 CTTACTTTAAAATATTCAAACATAGCGGAAATACAGAAATTTGGAGTGAAGCAGCGAATCATTACCATATTGAGAACGTGT-TCGGGACTGAGAAAAT----------CCGAAATTCCTATCACATAATATAGGTAGGTCAGGAGAC------ACG--ACCGATTAAAA-TAATCGGAGTTTTAGA--TAATCAAAATCTTAATCTTAGGCCGGCAAG-CGTCATCAA--CGC
s cb4.chrX              10365507 199 + 21540570 CTTACTCTAAAATATTCAAACATAGCAGAAATGCACAAATCTGGAGTGATACACCGGATGACAACATTTctt----------aggaatttttgggaatgaAATGAAGAGAGAGTCCTATTATTAATACCGAA--CAGTTTAGGGGTCGCGGA-TTG--ACCGgataaaa-----------taaaaatccacCCATG-TTTAGCCCTT-------CACAGCGTCACGAagtgga
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   1886806 204 -  4500979 CTTactttaaaatattcaaacataGCTGAAATACACAAGTCAGGAGTAACACACCGAATGATAACCATTTTC----------TGAATGTTATGTGACT------------GCTTCTGGCAGCTCGTACAGAAT-CATTTTCAGGGTCACGGA-TCGACACCGATtaacaaaattgaagattACAGACTTATCTGCATTTTAGTTCTGAT--GAACACA-CGTCAGCAA--AGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     15529 202 -   141584 CTCACTCTGAAATACTGGAAAATTGCAGAAATACAGAAATTTGGAGTCACACAACGAATAACAACCATTCTCAAATCGTATTTTacgaatgaatgaat------------gaatttcatttctcatgaGAAATCGGATATCAGGGTTAAACT-GTG--TCAGATTA-----ACTCCAGATCTCATACTTATTAGTAGTGTCAC--------GAATACA-CGTCAAAAG--AGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289571 205 +  4147112 CTCActttaaaatattcaaacataGCAGAAATACAAAAGTTAGGAGTCACACATCGTATCACCACCATTTTC-------GCTTCAGTTATCTATGAAT------------GAGCTTCA-CTCCCAT--GAAATTTGGTTTGAGGGTCAAACCGGTG--ACCGATTATCA-TAATCAAGATTACAGACTTATTTGTGGTTTAGCCCTGATGAGCGAGCA-CGTCAGCAA--AGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435536  38 +   591668 I

a score=27532.000000
s ce10.chrX              5029911 36 + 17718866 ATTTAGTT-----------AACTCACCACCGGAGACTGCATCATTT-----T
s cb4.chrX              10365706 52 + 21540570 ttttcagattgctctAACTAACTCACCACGGGTGACTGCATCATCTTGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1887010 46 -  4500979 ATTTGGGA-TACTTAAACTAACTCACCACCGGTGACTGcatcattt-----t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     15731 46 -   141584 ATTTAGAT-AGCTTAAACTAACTCACCACTGGTGACTGCATCATCT-----T
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3289776 46 +  4147112 ATTTATAT-TACTTAAACTAACTCACCACTGGTGACTGCATCATCT-----T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   435574 36 +   591668 -----------ATATATTTTACTTACTACCGGTGACTGCATCATTT-----T
i caeJap4.Scaffold17934 I 38 I 3165

a score=-33265.000000
s ce10.chrX              5029947 467 + 17718866  
s cb4.chrX              10365758 534 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1887056 568 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     15777 440 -   141584  
i caeSp111.Scaffold567  C 0 I 34
s caePb3.Scfld02_0       3289822 564 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=-1156.000000
s ce10.chrX              5030414 43 + 17718866 TTTTC----CGCATGACTTCTTGCACACACACACACACAGAAACTTG-----
s cb4.chrX              10366292 50 + 21540570 -GGTCCCCACACATGACCTCATGAAACAAGAC-CAGGATGAACCTTTGGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1887624 28 -  4500979 -GTTC----CACATGACCTGATGCACCAGGGC-------------------G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3290386 35 +  4147112 -GCAC----CACATGACCTGATGCATCGGTGT-------GAAACTAT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e caeSp111.Scaffold567     16217 34 -   141584 I

a score=-66688.000000
s ce10.chrX              5030457 354 + 17718866  
s cb4.chrX              10366342 406 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1887652 210 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     16251 218 -   141584  
i caeSp111.Scaffold567  I 34 C 0
s caePb3.Scfld02_0       3290421 482 +  4147112  
i caePb3.Scfld02_0      C 0 I 148
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=-25225.000000
s ce10.chrX              5030811 128 + 17718866 TTCACTCTGGGAATCAGACATCTTTTTGGCAATTCGATAAATGACAATAG--CCGGATTTTCAAATATAGAAAAACGATCAATCGG----------GATTTCCGGCACTTTC-----CGGATCAT---CCAATTGCTGA--------------------------AAATTCAGT-----
s cb4.chrX              10366748 149 + 21540570 -----TTTGAAAAC--ATCCTGCCCCCAGaaa----aaaaCTCCCAGCGA--ACGAATTC--AGAACTGGCAgagaacaaaatttg----------aaaatactgaaaattc-----tgaaccaAACTTCAGGTATCAAGTTGTCACGTCCCGCGCCCGCCTTCACTATGAAATTtgta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1887862  69 -  4500979 -----TTT-------------------------------------AGTGATGACAAATGT--AGTTCTATTAGA----------TG----------TAGCCAC---ATGTTCGCCCGTGACTCAA---TCAGATGTGAA----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     16469 122 -   141584 ----------------------ATTATGGAGA----TGAAACGGAAGTTAAATCTGATTCG-AGAATTTGGAGAATAGCAGATTTGgctgattgaaaaaatattgaaagcTT----------------CTAAATTTAAA---------TATCTCATACGACTTATCAAAACAAt-----
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3290903 148 +  4147112 I
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=-1177.000000
s ce10.chrX              5030939 551 + 17718866  
s cb4.chrX              10366897 596 + 21540570  
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   1887931 495 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold567     16591 457 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3291051 503 +  4147112  
i caePb3.Scfld02_0      I 148 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=-4151.000000
s ce10.chrX              5031490 26 + 17718866 -----------------ACTAAAATGTCAAGCATGTGATGAGA-------
s caeRem4.Crem_Contig0   1888431 24 -  4500979 -----------------aacaaaatg------gGGTGATGTTCGGTT---
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold567     17048 36 -   141584 ttttcctttCACGcgacaaaaaaa-----------agatgttcGGTG---
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3291554 37 +  4147112 ttttctattC------TAAAGAAAT-------GGGTGATGTTCGGTGGGA
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10367493 24 + 21540570 I

a score=124657.000000
s ce10.chrX              5031516 616 + 17718866  
s cb4.chrX              10367517 595 + 21540570  
i cb4.chrX              I 24 I 2
s caeRem4.Crem_Contig0   1888455 633 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     17084 592 -   141584  
i caeSp111.Scaffold567  C 0 I 491
s caePb3.Scfld02_0       3291595 667 +  4147112  
i caePb3.Scfld02_0      I 4 I 1
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=1336.000000
s ce10.chrX              5032132 91 + 17718866 TGG--CACGCCTATGTTTGATGCTCT-----AACATTCACAA----CATGAGCGAATAGTTGGAGAAGTAGAAGAAATTGAGAAGATTCAATTTCAGCTGCT-
s cb4.chrX              10368114 85 + 21540570 TGGTACACGTCTCTTTTTGGTGTTTTACAAGAGTATATAAGGTCTACATGTA---------GAAGAAATGAGAGCA--------GATTGAATTTCATTGGCT-
i cb4.chrX              I 2 I 3115
s caeRem4.Crem_Contig0   1889089 82 -  4500979 TAG--CACGCCTCGATGTGGTGTTTT-----AGTAGAGAAGG-----ATGGAATAATAAacgaagaaatgaaaacgaat--ACTGATTGAGTTTCA-------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3292263 79 +  4147112 TAA--CACGCCTCTGGATGGTCCTTT-----GGAAAAGATGGAATATATAAG---------GAAAAGATGTAAACCAAC--ACAGATTGAGTTTCA------A
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-1766.000000
s ce10.chrX              5032223 159 + 17718866 TTCTTAAAGTTTTTTGAAGCAATTCATCAAGTGAACT------AATTTTTCTCAGAATAAATTCAATCAGAAACACAACACGGACATACATCT-----CGTGGAAAAATGAAAAACAA-TCAACAAAAAAGCCT-----GACAAACAAAAAATTTAAAAAAAATG---CGACGTTGACT
s caeRem4.Crem_Contig0   1889171 138 -  4500979 ---CTAAAGTT---------------TCAGATGAACGgatgtataacttttttggtttcattttcattAGAG----AACAAAGTCTCTTATTC-----TTTCACAAAAAGGAACCCGAGATAgctaaaaagctg--------aaaaagggATGCGAAACATG------GGACACTGGCT
i caeRem4.Crem_Contig0  C 0 I 103
s caePb3.Scfld02_0       3292342 136 +  4147112 ----TGAAGTT---------------TCA---GAACGGAAGTAAATCTTTTTTCGTGTCTTATTTCT---------aacataagttttttttcagcagctTCGTAGA------------ATAGCCAAAAAACCGAaccagacaaaaaaagaaacaagacaGAATGGACGGACATCTACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-825.000000
s ce10.chrX              5032382 92 + 17718866 CATTTAATGAGTATGCACATGTTCGGTTTTTTTTTGTTGTCGCA-----------ATTCTTGAGGATTTATACATAGTTAGAAGCAATttaaaggtggagtca
s caePb3.Scfld02_0       3292478 64 +  4147112 CA-------------------------------Ttgttgttccagaaaaaaacagat-----agaaTAGGCACAGAGTCTGAGAAAA---AGAGGTTGACTCA
i caePb3.Scfld02_0      C 0 I 270
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I
e caeRem4.Crem_Contig0   1889309 103 -  4500979 I

a score=0.000000
s ce10.chrX              5032474 74 + 17718866 cgccaatgagtggggaagttattaaaaatcaatcctaaggtgccaaaatgaccaaatatcatagtaaacctatt
e caePb3.Scfld02_0       3292542 270 +  4147112 I
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I
e caeRem4.Crem_Contig0   1889309 103 -  4500979 I

a score=-722.000000
s ce10.chrX              5032548 243 + 17718866 taaagattgttttgaaacaattttattggcagttaaaaaatgacaattatttaggttttgTGATCGATGGCTtccaaaaaagtggtaaaaactgagttttttgaaattttcaaaaaaaaaaccatatgaattttgaaaagttgtttgcatt----tttactatcatatttgg--tcattgtgatgccatagcttgttttgttttaaaacagttttcccactggcgctagttaccttAAATATCTCTACA
s caeRem4.Crem_Contig0   1889412 195 -  4500979 taaatatttttctgagaaatgtATGTT----------------TAATTCATAGTGGTTCTTGGTCAAAATCTGTCACAAACCTACGA------TAGTTTTCtcaattgtt--gaaaataaacca---aaaatccACTCATTTATTTGAGTTATAGTCTAACTCCATCTCAGGAATTCATGTTATGTC--------ttttgtttagaaaaa---tatCTAATGGGGCTATTCAC----------------
i caeRem4.Crem_Contig0  I 103 C 0
e caePb3.Scfld02_0       3292542 270 +  4147112 I
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-9107.000000
s ce10.chrX              5032791 208 + 17718866 AAGAAAC--------AATCAAAATTTCAGATTTTTGATTTAAAATACA---TTTAGACTGGCATTTCACA---------GGTTGAAAAAGAAATCACAGCTTTTTTGATTTTCTTATTAAGCGACGCA-GTTTTTTCCTGTCACAATTGTGGAACTCGTTCAAAAAAATTATTTCCGAAATGGGAACATTTTCGGTCTTAGAACATGCAGAAATGCTTGCAATTTAAAA---------
s caeRem4.Crem_Contig0   1889607 157 -  4500979 ---------------GACcagta--aaaagtttttt---------------cctcGATT--CATTTACCCGAAAAACACggcgaaaaacggaaaaactg-tttttcggtaaatgaatcgagggataaaaaaatttttccggA-----GGTG----CCAT------------TTTTCTAAACAGAAGCAT----------------AGCATGAATGCCTGAGATGC---AGTT------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3292812 182 +  4147112 AGGAAATCCAACCAGGactaaaa--caaatttttttagtcaaCGCAAATGACTCCGGAT--CGTTTCATCAAAG-----GATGATGATAGTAATCACTG-ATTTCAGGTGTTT-----------TGAATATCTTTTATTGCC-----TGTGAAACCTGT------------ATTTTGGGATTCAGGCTT------------------CAAGAATGCGCATAATgtttaacttttgaaa
i caePb3.Scfld02_0      I 270 I 177
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-1712.000000
s ce10.chrX              5032999 178 + 17718866 AAAGTTGATGTCTTGTG---------GGAATTCGC----------AGATTATAACAGTTTTACTAAAGTTTTAAAGAAAATCTAAAAATGTTTAGTGAG--------TTTATATATT-ATATCGGGTCATGTTTGACTATTATGATTCATTATCTAATTTTCAGAAAAGTGT----TCGGTAC------ACCATCAAAACTACTACA-ATAAGTTGT
s caeRem4.Crem_Contig0   1889764 210 -  4500979 AGA--TTATAACTTGAATTAAAGAGCGGAgttcgtttcattttcaagaatagaaaa-----actaaaaagtgaagaaaacaaTATGATTTCAAATTGAGGCAAAGTTTTTACAAGTTAATTTTTAAGCATGTGGAACTTCTGTGAGAAATAGTTGCACCTGCCTAAAAAGGTAGAATTGTTATTTTGAGATCATCGTGAGTATTGTACActtgtttt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3292994 177 +  4147112 I
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-3590.000000
s ce10.chrX              5033177 89 + 17718866 ------CAAAAACTGGCTGACATTGTTAACTGCTAATGAATTGTCGAAATTTTTA--CTACACCTATTCTGAATTTAAATGAATTATTTTATTTTGC-
s caeRem4.Crem_Contig0   1889974 83 -  4500979 caataaaagaCGCTGtctaattttctattc--------aattttctaattttt----caaaatcagtttg--ACCTGATATCATTATGCTATTTCAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3293171 66 +  4147112 ------caaaggCTAACCGTACCTCAAAAC-------GAATATCCTAGCcttctcaacaaaaacaattca-------------------caATTCACA
i caePb3.Scfld02_0      I 177 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I
e caeSp111.Scaffold567     17676 491 -   141584 I

a score=-3475.000000
s ce10.chrX              5033266 17 + 17718866 ---AATTTAAAAATTGATTC
s caeRem4.Crem_Contig0   1890057 13 -  4500979 AGAACCATGATAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18167 14 -   141584 --AACTTAAACACTCA----
i caeSp111.Scaffold567  I 491 C 0
s caePb3.Scfld02_0       3293237 11 +  4147112 ---AATACAAAACT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I
e cb4.chrX              10368199 3115 + 21540570 I

a score=3955.000000
s ce10.chrX              5033283 78 + 17718866 AACTCACTCGCATTTCCATGG---ATTTAC-----A-AAAGAAACT----------------------GCAAATATGACA-AGCTGCTACA-AACACACTTATTTACAACT
s cb4.chrX              10371314 71 + 21540570 AACTCACCCGCATCTCCA------TCTTGg-----tagaaaaatat---------------------aataagTATGGCA-AATGAACACGTTTT-------TTCTCAGAG
i cb4.chrX              I 3115 C 0
s caeRem4.Crem_Contig0   1890070 80 -  4500979 AACATATCCGCATCTCCATT----TCTTGG-----T-GAAGAATATGTTTCTAG------------AAGCGGTTATGTCA-AGCTATTACA-CAC-------TTCTCAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18181 79 -   141584 GACTTACTCGCATTTCCATGAATATTTTGT-----G-GAATATCGT-----CAG------------CAGCGATTATGTGA-AGCTAATATA-CAC-------TTTTCAACA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3293248 95 +  4147112 --CTTACCCGCATTTCCATGGCTATATTAGAAATAG-GAATAATAA-----TAAGTTTCCAATAGCCAGCGTTTATACCCTAGCTATTACA-CAC-------TTTTCAACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   435610 3165 +   591668 I

a score=268238.000000
s ce10.chrX              5033361  897 + 17718866  
s cb4.chrX              10371385 1029 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1890150  914 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 199
s caeSp111.Scaffold567     18260  907 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3293343  901 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   438775  846 +   591668  
i caeJap4.Scaffold17934 I 3165 C 0

a score=-1763.000000
s ce10.chrX              5034258 35 + 17718866 CGGACAGTGATGTTGTTTGGCACTTGTTCAAAAAT
s cb4.chrX              10372414 29 + 21540570 TGGACA------CTTTATgcggaaaaacgaaaaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     19167 22 -   141584 TGGA-------------TGGTacgttttcaaacat
i caeSp111.Scaffold567  C 0 I 100
s caePb3.Scfld02_0       3294244 29 +  4147112 TGGACA------CTTGTTGTGATGATTTCGAGTAT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17934   439621 35 +   591668 TGGGCATGGACGTTTGGTAGCAGGAGCTTCAAAAG
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-5866.000000
s ce10.chrX              5034293 48 + 17718866 GTGTC--------GTAAGGAACAAAACAGGAAT------ATCAAAATTCGT-----AGCTTTTGAGA
s cb4.chrX              10372443 67 + 21540570 atgTTGGCAAAATATAATGTTCCAACCGAGAGTAAAGTAACAAAAACTATGTTCacaatattcgaaa
i cb4.chrX              C 0 I 68
s caePb3.Scfld02_0       3294283 45 +  4147112 -------------GTAACG---AAACCAGGAAT-TAGAAGCattaattctg-----aattttcgaaa
i caePb3.Scfld02_0      I 10 I 253
s caeJap4.Scaffold17934   439656 33 +   591668 ---------CTGCGAGAGCtgcaaaactgaaaa------acaaaaatt-------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-1970.000000
s ce10.chrX              5034341 35 + 17718866 TTCAATAAA-----------------------------------AGGAAAGT---GATACTTCTGCTA------CATAA
s cb4.chrX              10372578 76 + 21540570 TCTGAGAAACAAGCATTTTCAACAGTCTTGAACGGTTAGAAGTCGGGAAGGT---TAGATTTCTTTTAGCGGCAAATAA
i cb4.chrX              I 68 C 0
s caeJap4.Scaffold17934   439689 33 +   591668 -----gaaa-----------------------------------cggAAATTAAATATATTTCCGCTT------TACGA
i caeJap4.Scaffold17934 C 0 I 12
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=95.000000
s ce10.chrX              5034376 12 + 17718866 T---------TATTATCAAAA
s cb4.chrX              10372654 21 + 21540570 TCAACTTCAATATTCTTAAAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeJap4.Scaffold17934   439722 12 +   591668 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-6608.000000
s ce10.chrX              5034388  73 + 17718866 TGTTGT--AGAT------ATAAGCGGAACTTATGCTTGGTAATTTGCTT---------------------------------------------------TTATTCCAAATATTTCAAAACTA------------TTTGGCGTT
s cb4.chrX              10372675 128 + 21540570 GGTAGTTCAGAATCTTTAACAACTGGAAATTTCCGTTTTAGACTTGCTCGAATCGATCGGAAACCCGGTTTCCATACAATAGAAAACGGAAAAGGaaacattttcttgaatttttccagattt------------ttt----ct
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   439734  86 +   591668 --------------ttttGTAGATAGAATATT---TTTAAAGCTTAATC------------tatctcgttt-----------------------------tttttttcaatcaaacCAGACTTCGGATCACGGTGTTCTGCGTC
i caeJap4.Scaffold17934 I 12 I 140
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-1119.000000
s ce10.chrX              5034461 138 + 17718866 TCAA---------ATTTG-GTTTTTCAG---ATTTGAGAGCT----------------------------TTTATACGTCTCCTTAATTCAGG---AAAGTTTTCGCAATGTAGCAA--------TATTTCAAAGTT-----GGCAATCGCTGAAAAC---------GCAAAGTATCGTCAGTGAGG-----AAAATAGTTTGAAACCG
s cb4.chrX              10372803 209 + 21540570 tcaattaacTTAGATTTGTGTTCTttaagatatttgaaaaatacttatACTATTTTCGATGTACTTCAATTTTAGCCTTTTCTGCAATTCAAGCGAAAatctatcgaaaaaaaaccagtttcccgtttttcagattttttcaaatattctcgGGAAATATTTGGTTTGGAAAGTAAAAGAATTAAGGGGTACAAAAGTGTACAAAACTA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeJap4.Scaffold17934   439820 140 +   591668 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-822.000000
s ce10.chrX              5034599 43 + 17718866 CTCCTAGGAATCAAAACCtttttttaatttttttaaaatttaa
s cb4.chrX              10373012 27 + 21540570 ATTAAAGGCACAAAA----------------TTTACAACTCGG
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   439960 38 +   591668 TTCTTTGAAATAAAGACTATGTTTTT-----ATCAAAGTTTTA
i caeJap4.Scaffold17934 I 140 I 417
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=-1073.000000
s ce10.chrX              5034642 343 + 17718866 atCCAAAAAATA----GTAAAAACTCAGTTTT------------CTTCTATCACGATTTGCCACAATTTGTAAT----------TTTTTAAATAAATTTCCAC-----AATTTTTTAATGCCCTACAAGTGGAATTTTGGAGAATTTGCCAATTTACCAAAATGTTGACTTACAAAAATTCAACATTTGTGGCAGTATTGATTTATGCTGTTCGGTTCAGTTGGTAAATAATTGACGTGAATCCTAAATTATTTTCAAAGTAGGTTGAG---CAAGTTTGACATAGCTGAATCTGCGGAAT-TCCGGATATCTTCA---TTTTCGAAAATTTTATTTTT------TATTTGTTTGTCCT-------CATCGAAGAATTTATGAAAGAGAAAGGA
s cb4.chrX              10373039 362 + 21540570 GGTTAAAAAATACCCggaaaaagttcgaattttgtaccccccccccccccccctgaaTTGT-AGATTTTGTAATCCTTGATTAATTCTTTTATTAATCTGCACCCCCAAATTGTTGAAT--CCTTCGAATTATGTGcgaaataattgagaaaattttcatgatattCTC--------AGGTAATATCT-------TGTTGTTGTAAGCTGAACGATTaa--cgaaaaaaactttttttatacgCTAGAATATTT---AAATTGAATGAAACACAAAATGGCTCTCATTAAATCGAAagaaaatcttggaatttccaaaactctcGGAATATATGTTCTTAGAACATGTTTGTTTCTCGTGTCGTGCCATTAAAACATTTACGAAG---------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeJap4.Scaffold17934   439998 417 +   591668 I
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=0.000000
s ce10.chrX              5034985 10 + 17718866 TCTAGTGATC
e caePb3.Scfld02_0       3294328 253 +  4147112 I
e caeJap4.Scaffold17934   439998 417 +   591668 I
e cb4.chrX              10373401  0 + 21540570 C
e caeSp111.Scaffold567     19189 100 -   141584 I
e caeRem4.Crem_Contig0   1891064 199 -  4500979 I

a score=1023.000000
s ce10.chrX              5034995 14 + 17718866 TTTGTTGAAGATTT
s cb4.chrX              10373401  4 + 21540570 ----------TTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1891263 14 -  4500979 ttggttgaagttct
i caeRem4.Crem_Contig0  I 199 C 0
s caePb3.Scfld02_0       3294581 14 +  4147112 tctattgAAGTACT
i caePb3.Scfld02_0      I 253 C 0
e caeJap4.Scaffold17934   439998 417 +   591668 I
e caeSp111.Scaffold567     19189 100 -   141584 I

a score=-1936.000000
s ce10.chrX              5035009 1 + 17718866 -A
s cb4.chrX              10373405 1 + 21540570 -T
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1891277 1 -  4500979 -t
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3294595 1 +  4147112 -T
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   440415 1 +   591668 A-
i caeJap4.Scaffold17934 I 417 C 0
e caeSp111.Scaffold567     19189 100 -   141584 I

a score=41033.000000
s ce10.chrX              5035010 222 + 17718866 ATTTA-TTGAA-AATCAG-----AAAAAGACCAAATATAGTACAG---CATCAGATT------------AATTATTATCAT--CAT-GGTACGAAAAAAATCT--CG---AATTTATGAATCATGGAGAGAAA--CTAAAAACGTGTAAG-------AACGACACA-----------------------AAAAAAG-------------ATTCCCGCGAAGTCACAACTGCA---ATTCGTCGGAAAATT---GTATACCT------ATAAGAGACAAAGCGAAGGA---------G-GAGTGGAAAATGACAGTGAAG-
s cb4.chrX              10373410 255 + 21540570 ATTTCTTCAATCAACCA---------------AAACTCAATAAAATGTTATCCGATT------------AATTA-TATCAT--CTTGGGTAC------AATCT--CG---AAATTATGAATCATGGAGAGAAAAGCtaaa------tgag-------agagagagagagagagagagacatacatttttaaagagcttattaaaaaataattcccGCGATTTTACAACTGCA---CATCGAAGGGAAATTACAGTATACCT------ATAACAGACAAAGCGAATGAGAGAGGAGAG-AGGGGGAAAATGACAGGGAAG-
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1891282 191 -  4500979 attta-tcaAT-AACC----------------AAACGCAATAAGGGTACATCCGATT------------AAATA-TATCAT--CAT-GGTAC------AATCt--cg--aaaattatgaatcaTGGAGACaaa--ctaaa------taaa-------a-------------------------------aaagaac-------------attccCGCGAAGTCACAACACCA---ATGCGGCGGGAAATT---GCATACCT------ATAAGAGTCAAAGcgaatga-----gagag-agagggaaaatgAC--------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold567     19289 194 -   141584 ATTTA-TTGAT-AACCA--------------TAAATGTAATGATG-TACATCCCATT------------AATTA-AATCAT-------Gtaa------aaattgcagaaaaaattatgaatcatggataaaaa--ctaaa------tgag-------aa------------------------------gaagaac-------------gttCCCGCAGGTCCACAACTGTTT--TTGTTGCGG-AAAGT---GTTTACCT------ATAATAGACAAAGCGAATGA-----GAAAGCGAAAGGAAAATGAC--------
i caeSp111.Scaffold567  I 100 C 0
s caePb3.Scfld02_0       3294599 196 +  4147112 ATTTA-TTGAC-CA------------------AAACGCAGTGAGG-TACATCCCATT------------AAACA-TATCAT--CAT-ggtaa------aattt--aaaaaaaattatgaatcatGGAGAGAAA--CTAAA------TGAAGATTGTTAA------------------------------AAATTAC-------------ATTCCCGCAGTTTCACAACTGTTTTCTTGTTGCGGAAAAGT---GTTTACCT------ATATTAGACAAAGCGAATGA-----------GAAGGGAAAATGAC--------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   440416 243 +   591668 ACTTC-TTTAA-ATACGGaaactaaaaatttcaaatttattaaacATTTAagcagtttttattttaaaagaaTA-CATCAAGGCAT-GATAA------AACAT--AT---AAAAATTGAATCATGGAGAGAAAA-CTAAA------CGTt-------ca-----------------tatttatgtatttaaatTGA-------------ATTCCCGCGAAAACACAACTGCA---TTTTGACGA-AGAAT---GGTTACCTAGTTTGATGagaaa-aaagcgaatga--aagggaag-aaaaggaagaagaa-------g
i caeJap4.Scaffold17934 C 0 I 28

a score=-6432.000000
s ce10.chrX              5035232 18 + 17718866 AGTGTG-----GGT-GAACAGTTT-
s cb4.chrX              10373665 22 + 21540570 A---TGAATAGTGTAAAACGGTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1891473 12 -  4500979 -----------TGT-AAACGGTTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     19483 11 -   141584 -----------AGT-AATTA-GAG-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3294795 12 +  4147112 -----------AGT-AATTGTTGg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   440659 28 +   591668 I

a score=-3012.000000
s ce10.chrX              5035250 45 + 17718866 TACAAGTAAAAAAGGAGGAGGAGAAGAAGATGGATGAAAATGAAT
s cb4.chrX              10373687 16 + 21540570 TACACG-----------------------------GAAAATGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1891485 27 -  4500979 Tacagg------------------agaaaagaaaagaaagagaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     19494 18 -   141584 TAGAGA---------------------------AAGtaagaaaat
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3294807 18 +  4147112 tacaaa---------------------------aaagaatagaat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   440687 45 +   591668 TACAAGTAAAGTAAACAGTAAAAGTTGATAGATGAGTGGATGAAT
i caeJap4.Scaffold17934 I 28 I 116

a score=-22607.000000
s ce10.chrX              5035295 108 + 17718866 AATAACTGCAATTATTAGAATAAAGAG------------TTTAACTGAAAATTATAAT-----------------CCaaaatttaaactttaaaatttaaaattcaaaattcataaaaaGACAAAAACTGAAAATGT
s cb4.chrX              10373703  88 + 21540570 AAGAATTTCATT-------ATTTCCAGTTGGTTTTATTTTATAACTGAA--AGATGTT-----------------TGATga------attaaaaactgaaaattttaa-----------------aaacgatAATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1891512 122 -  4500979 agaAATGAGAGTGG--GGCGTTGcgag--aatttctttttttgactaaC--ACATGTGTTCTGTTGTTTTGGGTATGATGGT-----GGTTACAACTAAACATTCAGA----TAAATGAGGGAGTAACTGAAATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     19512  60 -   141584 agt-----------------ttttgtgatgt-----ttttgaaagggAT--TGATGgt---------------------------------acaattgaaaaatcc-------------------aatt-aaAATGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3294825  71 +  4147112 gatGA--------------ATTATATGATGTTGTTCTTGTTTAAGGTATGATGgtaat---------------------------------aaaacagaaaatatc-------------------agttgaaaatgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   440732 116 +   591668 I

a score=140023.000000
s ce10.chrX              5035403 383 + 17718866 GATG--------G-GAGTGA-------------------GAAAACGAGACC----ATAATTGAAAAAGAAAAGATGAATACGATGTAATGT-----TGTT--------------ATTCGGCG-----------GTCTTAGAAATCTACTCGTCATCCTCATCTTTTCTTCCCCCTGCAGCTGGAGCACTGTCGACTTCGGCGGACTCCTTCTGATCCTCAAGAAGAGGAGCAATCGTGGTCAGCTCTTTCTCATCAACCGTCGACAAGTTTTCTCTTTCCTCCTTCC--TG-TAATTAAAATTTGTTTTAGATATGTTAAT----------------CGGTAAATTTAATT----------------------ACTTTTTGTTAAACATGTAAACTCCGGCTCCAACCAATCCAGAGAAAACGAAACCAGCAATGACCAACGGGATGAAATTGAATCCACTCTCAGACTTCTTCATTTTCTGGAAA--
s cb4.chrX              10373791 400 + 21540570 GATGAGAGTGGGG-GAGGGAGAaagaaaggaagagaaaaagaaacgagACC----GTAGTAGACAAAAACGAGG--AACAACGCCTAATGATGATTTGTT-------------AATTGCATA-----------ATAC----------CGCTCATTCGTcatcttccttcttctct---tctggGCTTTCGTCGACTTCGGCGGACTGTTTCTGATCCTCAAGAAGAGGAGCGATAGTGGTCAGCTCTTTCTCATCAACCGCCGACGCATTCTCTCTTTCCgcatttc--tg-aaact--------------------caag------------------aaataattatttaaGAACTTTCAAATCATCACA-ACCTTTTGTTGTACCAGTAAACGGCTCCTCCAACTCCGGCCGAAAAGCAGAATCCAAGAATGGCAAGTGGGATAAAGTTGAAGCTGCTCTCAGTCTTCttgagcttctgaaaa--
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1891634 405 -  4500979 AGTAAGTGTGATG-GGGGGA---------GTGGTGGAGAGGAAGCGAGACCATAAGTAAAAGatgaatccgaaa--aaaaacgcCTAATGATGATTAATT------GGTTTCCAATTGTAGA-----------GCAC-------ATTTTCTTATTCGTCATCTTCCTTTCTCTCT---TGTGGGTGTTCGTCGACTTCGGCAGACTCTTTATGATCCTCAAGAAGAGGAGCGATTGTTGTCAGCTCTTTTCCTTCAACCAACTCCTGGGCGGctctttcgttttttc--tg-aaaatg-------gatca-----TATAAG------------------TTAAGATTAAGTGAGAAAT---------ACACATACTTCTTGTTGAACATGTATACTCCACCTCCGACCAATGCCGAGAAGAGTAATCCACCGAAAGCCAACGGGATGAAGCTGAATCCACTGCCagctttcttcattttctgaaaa--
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold567     19572 381 -   141584 G-----AGTGGTGAAGGGGA-------------------GGAAGCGAGACC----ATAAgtgacaaaaagaagatgtaGAGAGCCTAATCA-----TGTT--------------ATCAAATACGTGAGCCGATGTTT-------CTACTCATTATCATCATCTTTCTT---GTCT---TCTGGGGCTTCGTCGACTCTGGCGGACTCCTTCTGATCCTCAAGAAGAGGAGCGATTGTGGTCagctctttttcatcaaccGTCGACtgattctctctttcctcctTCCTGTG-AAAAAA-------TGTCAATGAATACAAT-------------------TCAACTTGATTAA----------------ACATACTTTTTGTTGAAGTAATACACAGCGGCACCAACCattccaga-aaaacgaaTCCGCCAATGACGAATGGAATGAAGTTGAATCCAGATTCagatttcttcatcttctgaaa---
i caeSp111.Scaffold567  C 0 I 10
s caePb3.Scfld02_0       3294896 393 +  4147112 gATGGAAGTGGTG-GGAGGA-------------------GAAAACGAGACC----ATAAGTGACAAAAAAGATA-------AGCCTATTCATGTTGTGTT--------------ATTGCATAGTTGAGCTg--gttt-------caattcaatttactCATCGTTCTTGTCGTCT---TCTGGGGCTGCGTCGACTGCGGCGGACTGTTTCTGATCCTCAAGAAGAGGAGCGATTGTGGTCAGCTCTTTCTCATCAACCGTCGACTGATTCTCTCTTTCCTCCTTCC--TG-AAAATA-------TCCCAAATATTAAAATAGTGTTATCA----TGGGATAAAATTGAtt---------------------tactttttgttgaaaaaccaaaCTCCAGCTAGAACCGTTCCTGAGAAAACAAATCCTCCAATGACAAACGGAATAAAGTTGAATCCGCTCTCcgacttcttcattttctgaaa---
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   440848 397 +   591668 --------ggggg-ggggga-------------------gaaAACGAGACC----ATGAGTAAAAAAGACAGAA---GAATAGCCTATTCGGTGTGTGCTCCCAAAAGTCTAGGATTCTTTT-----------ATCA-------CTGCTCTTCGTCCTGGTTCTCATCATCTTCT---ATTGGATTCTCGGCAACTTCAACGGATTCTTTCTCGGTTGCAAGGAGAGGAGCAATGGTTGTGAGCTCTTTCTCCTCAACAATCGACAATGCTTCTCTTTCTTCTTTCC--TGCAAAACA-------TATGAATTTTAACAATATCGTCATCAGTTGTTGTATAAACTA--------------------------ACTTCTTGTTGAACATGTAAACTCCAGCGCCAACCAGTCCAGAGAAGACGAATCCAGCAATAACCAATGGGATAAAGTTGAATCCAGAGTCGGTCTTTTTCAACttctgtaaaaa
i caeJap4.Scaffold17934 I 116 C 0

a score=397.000000
s ce10.chrX              5035786 4 + 17718866 TAAC
s caeRem4.Crem_Contig0   1892047 4 -  4500979 TCAT
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold567     19963 4 -   141584 TGAA
i caeSp111.Scaffold567  I 10 C 0
s caePb3.Scfld02_0       3295296 4 +  4147112 ttAG
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   441245 4 +   591668 taac
i caeJap4.Scaffold17934 C 0 I 47
e cb4.chrX              10374191 35 + 21540570 I

a score=-6689.000000
s ce10.chrX              5035790 30 + 17718866 TTCTTTTTTTCA-TATTTTTTATCATTACAA
s caeRem4.Crem_Contig0   1892051 13 -  4500979 TGCGTCAACGGAA------------------
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold567     19967 25 -   141584 TATGTATCCATA-TATATAAATGCTC-----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3295300 26 +  4147112 TGCTTCTGGGAACTGTTTGTTGTTTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   441249 47 +   591668 I
e cb4.chrX              10374191 35 + 21540570 I

a score=737468.000000
s ce10.chrX              5035820 1266 + 17718866  
s cb4.chrX              10374226 1274 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1892075 1295 -  4500979  
i caeRem4.Crem_Contig0  I 11 I 31
s caeSp111.Scaffold567     19992 1283 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3295326 1341 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   441296 1320 +   591668  
i caeJap4.Scaffold17934 I 47 C 0

a score=-3932.000000
s ce10.chrX              5037086 34 + 17718866 --ACCTCTGTCCCTAAACTGGGTATATAT-TTTCCAG
s cb4.chrX              10375500 20 + 21540570 --TCctcttc--------------tacag-tatccca
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     21275 21 -   141584 --ACCCCTAT--------------TAACTACATCTAT
i caeSp111.Scaffold567  C 0 I 9
s caePb3.Scfld02_0       3296667 20 +  4147112 --ACCTGTAT--------------TAGTT-CACCCCT
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   442616 27 +   591668 ctctctctctctctc---------tctct-ctcccat
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1893370 31 -  4500979 I

a score=125565.000000
s ce10.chrX              5037120 346 + 17718866 --ATCCGTTGTACTTATTCACTT-AATTTCATAGTTTGGCTTGATGA--GGTCAAGTTCAGTGAACCGAGAA-----ATTGACTGGT-ACTTGTTCAATAAAATGGTGTGTATACATGCCTTTTCGGATAATAATTACATAGCGATTC-GTTCA----CTACACCAAAAACATTTATAGTACTACACAATTATCTAATCTGTGAGCGGAAGTGAGTGGGCAG-------TAC-ACAAAGTACAATAGAAAGGAGCAATTGCCG--CTGTTGTGGTAACTACGAATTTATTCATTATGGACCTTT---GAAA-------GACTTACCTCAGTCACTCGTCTTAGCCCACTTTGGCAATGGAATTTCTG-AAAGT-TGAAATTTTG
s cb4.chrX              10375520 333 + 21540570 --ttcAC--GTCGTTATACatat-aattt-ttggtttcattAACTCT--TTTGGCACTCAGTGAACCGAGAA-----ACtgactgacaaattgttt--cgAAAG---------AAACACC-----GG---ATAATTACATAGCGCTTCGGTCTCTCTACCCCACTAAACCCATTTGTTgttct---caattatcttgattgaGGTCGGAAGTGGTAGGGTGTTTGTGTATAATAGAAtagaaaacggaaaagagCAATTGATGGTTTCCCGCgggta----aaattttcagattaaaggGGCTGCCTGCCC-------GACTTACCTCCGTAACCCTTCTGAGTCCGCTTTGACaatggaatttctg-aaaat----aatattg
i cb4.chrX              C 0 I 54
s caeRem4.Crem_Contig0   1893401 335 -  4500979 --TTCACTTGCTACGATCCACTT-AATTT-GTAGTTTCACTCCgact--tttgaaattcagtgAACCGAGAA-----ACTGACTGac-atttgttt--caaaagaCTATGTATACATGCCTTATAGG---ATAATTACATAGCGCTCCGGTCTA-CTACTACACTAAAACCATTTGTTGttct---caattattttgattGGGGTCGGAAGTGGGAG------------TAA-ACaatagaaaa-ggaaaagagcaaTTGATGGAGGGTTGTGGTTAccgcaaattttcagattagagGAAAGG---GATT-------GACTTACCTCCGTAACTTTCCTGAGTCCGCTTTGGCAgtggaacttctgaaaaat----aaaattg
i caeRem4.Crem_Contig0  I 31 I 36
s caeSp111.Scaffold567     21305 320 -   141584 --TCCAATTGAAACGATTCACTT-AATTT-GTGGGTTCACTTTAT---------GAATCATTGAACCGAAAA---------ACCGAt-gtttgttt--caaaagagtatGTATACATGCCTTCTAGG---ATAATTACATAGCGCTTC-GCCCC-CCTCTACACCAAAACCATTTGTTGTTCT---CAATTATCTTTATTGAGGTCGGAAGTGGATG------------TGT-ACaatagaaaa-ggaaatgagcAATTGATG--TCTCAAC-----CCCCAAATTTACAGATTAGAACAAAGG---GACCCG-----AACTTACCTCCGTCACTCTTCTAAGACCTGATTGACAgtggaatttctg-aaaat-tgcaaCACTA
i caeSp111.Scaffold567  I 9 I 33
s caePb3.Scfld02_0       3296696 321 +  4147112 --TT--ATTTGAACGATTCACTT-AATTA-ACGGTTTCACTCTTCCT--GTT-AGATTCAGTGAACCGAGAA-----ACTGACTgac-atttgttt--caaaagagtATGTATACATGCCTTCTAGG---ATAATTACATAGCGCTTC-GCCTC-------TACCAAAACCATTTGTTGTTCT---CAATTATGTTGATTGATGTCGGAAGTGGGTG------------AGT-ACaatagaaaa-ggaaaagagcaatTGATGGTTACCCAC-----cccaaagttttcagattag--tTTTGG---GACC-------AACTTACCTCCGTTACTCTTCTCAAGCCAGATTGACAAtggtatttctg-aaaatatagaaaatta
i caePb3.Scfld02_0      I 9 I 49
s caeJap4.Scaffold17934   442643 313 +   591668 tTTTCTCTCACTTCGATGTATTTCAAACA-ATTATTCAAGCCCGTGTAGGTCAAAATTCACTGGACCGAGAAAAGAAACTAACTGAC-AATTGTTA--CAAAAG-------GTAAACACCTCTTTGC--AATAATTACATAGCGCTCC---CTC----ATCCCCCACCCCCATTTGTTGTTCT---CAATTATGTTGATTGCCCTTACAAGTAAGTG------------AGA-ACAAAAGAAAG-GGAAGTGAGCAATTGATG----------------------------GTTAGGTTCAAAG---GGCCCGGCGGTAACTTACCTCGGTCACTCGTCGCAGGCCGCTTTGACAgtggaatttctg-aaaaaccgGGAAAT--
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              5037466 54 + 17718866 TTTAGAGTATTTAGACCTTTTGAGTTTTGCATTTTCAATTTGCCTAGTTGATAC
e caePb3.Scfld02_0       3297017 49 +  4147112 I
e caeJap4.Scaffold17934   442956  0 +   591668 C
e cb4.chrX              10375853 54 + 21540570 I
e caeSp111.Scaffold567     21625 33 -   141584 I
e caeRem4.Crem_Contig0   1893736 36 -  4500979 I

a score=74091.000000
s ce10.chrX              5037520 323 + 17718866 AACTGATAAGGGAATTATTGTATCGGAACGTGTAATTATGTTAGAGA-------TGGTTCTCTGATCAC---AA-------AACATCAAATATT------TCTGCTGTAAAAAGAAA------------------AAAACGTAAACTTACAGTGTACGCGACTTTCGCAAGAATCAACAGGATAATAAACAATTTCATGATTTCGATCGCTTTTCTATAATCGGCGTTCGACAGAA--GAAG---TTGGAAATTACCTAACCAA---GGAGCT--------------GAAAGAATTTAGAAATTAATT-----------TTTAATTTGAAAA-------------CTCACTGATAAAAAATGAA-----ACGAAAGTGCTTGAGAATTAATG----TATTCTA--CATATTATGACG--------TAA--------------A
s cb4.chrX              10375907 348 + 21540570 AACTGATAAAG-----AGTGACGCGGAACGTGCAATTATGTTAAAGT-------AGGTACTCTGATCGTGCCGG-------AAACT--------------TTCACtgcaattacaaa------------------aaaa-----actcacggcAGTCGCGGCGGTCGTCAAGACTACAAGAATAACTAGAAGTCTCA---TTTCGATCGCTTAATGGGA--TGGCGTTCGACAGAA--AAAG-ATTTGGAAATGA--TCTCCAAGTGGAGgcaagctgaaatttttgaaaaagttattaaaacacacaga-------attttttttcgaaaagtcgtAAGAAGAGGGTActgataaaaagaagaaaagtgaaaaagtgcTTG-TAGTAAGCGAAATTGTTTCA--AATGACATGACG-----CACTTA--------------G
i cb4.chrX              I 54 C 0
s caeRem4.Crem_Contig0   1893772 349 -  4500979 AACTGATAAGGGAATTATTGTTTCGGAACGTGTAATCACGTTAGAAA-------GGGTACTTTGGTCAT---GG-------AAAGT---ATGTTTTAATGTTTGttgctaaaaaaaa------------------taaaaggttACTTACTGAGTAGGCGACGTTCGCAAGGATGAGAAGAATAACTAAAAGTCTCAT--TTTCGATCGCTT----GTA--T-ACGTTCGACAGAAGGGGAG-AATTGGAAATG-----TCCAA---GGAGCTagctgaa-------aaagaacaaataaaaGTAAtgg----------tttcttcaaaaaagtcacaGAGA---GGTACTGATAAAAA----------GAGCAAGTGCTTG-TAGTAAatggaaatgtttca--aatgagATGACG-----CAGTTAGATAGGACAAAGAGG
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold567     21658 328 -   141584 aactgataagagaATTATTGTTTCGGAACGTGTAATCACGTTAAAGA-------GGGTACTCTGATCAT---AA-------AGCAT----TGCTTTctagttttctaaaaaaaac--------------------gaaa-----acttaCGGAATAAGTGACGTTCGCGATGACCAATAATAACACTAAAAGTTTCATGATTTCGATCGCTTAAACAAA--TGGCGTTCGACAGAA--GGAA-GATAGGAAATGG---ACCCAG---GAAGct--------------g---aaatattgaa--taaTGTG-------AGTTTCG---AAAAGTGGAGAGAGA---GGTactgataaaaa----------gagaaagtgcTTC-GAGTAAACG-AATAATTTCAGGGGGGAAATGACGATATTAAACAA--------------G
i caeSp111.Scaffold567  I 33 C 0
s caePb3.Scfld02_0       3297066 347 +  4147112 AACTGATAAGGGAATTATTGTTTCGGAACGTGTAATCACGTTAGAGA-------GGGTACTCTGGTcat---ga-------aacat----cattt-----ttctctaggTGAAGCAat-------agaaactgtaaaaa-----acttACGGTGTAGGCAACGTTCGCGATGACCAATAATAAAACTAAAAGTCTCATGATTTCGATCGCTTATATAAA-TTGGCGTTCGACAGAA--AAAG-ATAAGGAAATGG-TTAACCaa---ggagct--------------gaaaaaatcttgaaattaatgaaacaaTGCAATGTCGAATAAAAGTGAGAAGGGA---GGTactgataaaaa----------aagaaagtgctTC-GAGTaagaa-aatagtttca--aatgaaatgacG-----CAGTAA--------------G
i caePb3.Scfld02_0      I 49 C 0
s caeJap4.Scaffold17934   442956 335 +   591668 -ATTGATAAGAGTATTATCTTTCTGCAGCGTGTAATCACACGAACTACATGGTTAAGTACTCTGATCAC---ACACGCACTAAACT----CTTTTcctagtttttttcttcttgcaATTTAGCAAAGTAAACATTGAAA-----ACTTACGGTGTACACGACGTTCGCAACTACCAGAAGTAGAACTAAGAGTTTCATGGTTTCGATCGCTAAATAGGG-GTTGCGTTCGACAGAA--TAAGAAACTGGAAATTA-----CCAA---gaagct--------------gaaaattgtttaaa------------------ttttaaatagatGATAACTGT-----GTAagtgataaaaaaaaagaat--taaaaagTGCGAG-AGGTAAATG----------A--CGTAAA--------------------------------
i caeJap4.Scaffold17934 C 0 I 286

a score=17710.000000
s ce10.chrX              5037843 231 + 17718866 GCATTATTT-GCAGAAACGATTTAAA--CATGAAAACTGTTCAGA---ACACACTGAAAGGA------------GACCGTA-----------------------------------------------AAACTACGTTT-TATGTTGAGAAATGACGAA------------------------AACAGTGGGAGGGTGACAATGATC----CCGGGGG-------------------CCGTTGACAAAAACAACTTGCACCCGC---------TGTCTAGTGTTGAGCTGATAAA-TCTGGGTGGGCGG-------CGAACAGAGGTTACT----------TTTTAGCAATGATAGAACAAAATTGCGAAA
s cb4.chrX              10376255 302 + 21540570 GAATTATAGAGCAACTACGTTTGGAGACAGTAAGAACTGTTCCCATTCAACAATTAAAATTATGAGAGGTGGG-AGGAGGA---------GTGAGTGTTGGAATTGTAAAGTGTGGGTCCGATATCCCAATctctttgtgtttttttttcaatgacgATGAG--------GTAAGTCGGGG------GTGGTGAGATCAAAATGAATTGAACAGAGAGGGTGGCAATAAAAGAGGGTCCATGAACAAAAACAACATGCACCcgtcaa---aaat-atcaaag--gGACTCATAGATTTCAGGTGGGCGGATTG---AGAACAAAGGTT---------------------------AAATG---AT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1894121 309 -  4500979 GAATTAAAG----ACAACGTATGAAG--AGTGAAAACTGTTCTGA---AACGAATGAAAATA----AGTTCTG-AAATGTA---------GTGGGTGGAGCAAATATAAAGTG-----------TCCAGATCgcttcat-tgtttttttcaatgacgAGGGGAT---GA-GTAAGTCAAGG--AAAAGTGGGAGGATAAAATTGATCTTAACagacggcccggc-------------ccgctggTAAAAACAACCTGCACCCGTCAAAATAAATGACTAGGA--GGGCTCAGAGA-TCCAGGTGGGCGGCTGGCGACGAACAGAGATTAccacacactt--ttttgaaatgtgtgaaGTG---TTGCGAAA
i caeRem4.Crem_Contig0  C 0 I 219
s caeSp111.Scaffold567     21986 306 -   141584 GTATTATCG----AATACGTTTCAAG--TCTGCAAACTGTTC---------tgttaaagaaaaaagagttaagaaagtgtattgttgaaaagaaaagttgaaaatatgaagaa-----------acgCTATCTCATTGT-TATTT-CTTCGATGACGAGAGAAT---GAGGTaagtcaaaaataaatgtggGAGGATGAAAATGATCTGAACAAAGAG-------------------CAATTGACAAAAACAACCTGCACCCACCGTCAAATCGGTCTGGGA--GGGCTCAGAGA-TCTAGGTGGGCGG-------CGAACAAAggctcttttctctatcatCTTGAAAAGTGTGAAG-----TTGCGAAA
i caeSp111.Scaffold567  C 0 I 126
s caePb3.Scfld02_0       3297413 292 +  4147112 GAATTATCT----TGTACGTTTCAAA--GACACAAA-TGTTCACGG--AGTTGTTG------------------AAACGTA----TGAtgagaaatgttg-aaatatCACAAG-----------A---TATctcattgt-tattt--ttcaatgacgAGACGATGAGGAGGTAAGTCACAGATAATAGTGGGAGGATGAAACTGATCTGAACAGAGGG-------------------CCTTTGACAAAAACAACATGCACCCGACAAAATATATGTCTAGGA--GAGCTCAGAGA-TCTAGGTGGGCGG-------CGAACAGGGGATATCTCTTGGGTT-CGTTGAAATGTGTGAAGTTGAATTGCGAAA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   443291 286 +   591668 I

a score=0.000000
s ce10.chrX              5038074 1 + 17718866 T
e caePb3.Scfld02_0       3297705 1 +  4147112 I
e caeJap4.Scaffold17934   443291 286 +   591668 I
e cb4.chrX              10376557 0 + 21540570 C
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-21683.000000
s ce10.chrX              5038075 412 + 17718866 -------------AATGAACTTGATGGACAAGATCAAAAATCTTTCAAAAAAAAGTGTTGAAAGAAATTTCTCATACTTTTATTATCTCAACCGAATTGTTTCTATTAGTGTTGCT---CAACTTTAGATGCTCATATTTGAATTATCAAC----TAAAACAATATTTTTCAATCATTTTTATATAGTTTTGTGATTAGCTATTAATTGACCAGCGACAGCCGAATCAGCTGAAATTTTTTCAACAAACTAGTGTCCCTACAGAGTACTTTCGCTGTATTTTATCGTACTACTACAGTACATCTATCATGCAGaactacagtaattctacagtacactacagtatcagtact-acacagtactacacactaccgcaccccgatcctcaccctaataattcactaatcacaacgtcaactaatttctttcaaaa---
s cb4.chrX              10376557 240 + 21540570 TGCCAGGAACAATTGCGA-----------------------------------------AAAGGAACTTTGTCCC----------------------------------TGTAGAT--CC--------ACGTTGATGTCTAAAGTTTGTAG----TA----GATTTTCTTGCATCAGAtagaaa-agtttca-gat------------------caaCTGGACAA-------AAATTGACTGGACGA-------------AAAACttaattca-------------------------------ataaaaaaaaacttcatcaACTGGACACAAAAct-taattttgtaattgataCATTTTTA--------------------------GTAAAAATTCTCTTA----AATG-AGACCAACAACTTGTAGAATTC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3297706 279 +  4147112 --CCAGG---TATTGCGAACTTT-----TGAGTTCAAGA---TGTcatagaaaacag--aaaagtaatTGATCCAAT-------------------------------GTGTGGGTGGCCAGCACTAAAtataaaattctaaattttttagcttttg----aatttcattttgtgaagtttata-aattttg-gagtgaatctt--ttga--GACAACTGCCGAA-------AGCTTGGGTggataagtt--------tcaaaaactatttcgcTG---------------------------CGTATTGAAGAGCT------------AATAATACC-CATTTT----ACGGATCTACTATTA--------------------------TTAACACATTT-------------GAACTAAGGTCTAGCAAAA---
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   443291 286 +   591668 I
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-853.000000
s ce10.chrX              5038487 130 + 17718866 actacatagtctacaaactatgaacacacggaatg---agcgctatatataAATAC---ATTTAGTAATTGATATTTTTGAAATCAAATTTCAAGTTGAAAGAATGGGTGTAATACT--AATAGAGGAAATAATGCAT
s cb4.chrX              10376797 116 + 21540570 -------------CAAACTGTGACCAAATACTATTTTCAGTTCCA-ACAGGAATATCCAATTTAG--ACTAATTTCT------TCAAATCTTATCCAAAGAAATCTCTTATAATTTTCGAACATCGAAAGTTGGCTAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3297985   0 +  4147112 C
e caeJap4.Scaffold17934   443291 286 +   591668 I
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-3256.000000
s ce10.chrX              5038617 77 + 17718866 ---TTACCAAATGTAGAAGGAAGATTTAAATTCAATTATTAGCTGCCAAT--TTCATTAACTGATCAGCTTATTTTATGAAA-------------
s cb4.chrX              10376913 81 + 21540570 TTTCAActaaagttggaaaaaaaaacggaa---aattg-----taCCGGTAGTGTACTTTC------GCTTGTTTTATTAGATTATTTGTTGAAA
i cb4.chrX              C 0 I 36
s caePb3.Scfld02_0       3297985 48 +  4147112 ---CTGCCAAACTC-------AAAAC-----------------TACCAAT--TCTACTTCc-----ggtttgttttcaaaca-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   443291 286 +   591668 I
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-957.000000
s ce10.chrX              5038694 50 + 17718866 ATGTGAACTTCATTTGGATTCGATGATTGAAAAAAAAATCCACTTTGTAG
s caePb3.Scfld02_0       3298033 20 +  4147112 ctGTGGTCCTAG------------------------------CCGTGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   443291 286 +   591668 I
e cb4.chrX              10376994 36 + 21540570 I
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-418.000000
s ce10.chrX              5038744 12 + 17718866 CTTGATTTGCAA
s cb4.chrX              10377030 12 + 21540570 CTTGACCAGCCC
i cb4.chrX              I 36 I 5
s caePb3.Scfld02_0       3298053  6 +  4147112 TTTAAT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   443291 286 +   591668 I
e caeSp111.Scaffold567     22292 126 -   141584 I
e caeRem4.Crem_Contig0   1894430 219 -  4500979 I

a score=-7144.000000
s ce10.chrX              5038756 37 + 17718866 AAAAT---------------------TCAAAATACAGAGAGCGTGAACGCAGCAATTA
s cb4.chrX              10377047 53 + 21540570 AATGTATCAAAACACCGCGGCTTAAGTTTAAACAAAACGGAACTACCACCAGC-----
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   1894649 26 -  4500979 AATGT---------------------TTAAAAGAAAACGGGCGTTC------C-----
i caeRem4.Crem_Contig0  I 219 C 0
s caePb3.Scfld02_0       3298059 16 +  4147112 ----------------------AAATTCGGAACAATTC--------------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   443291 286 +   591668 I
e caeSp111.Scaffold567     22292 126 -   141584 I

a score=-357.000000
s ce10.chrX              5038793 2 + 17718866 TT
s cb4.chrX              10377100 2 + 21540570 AC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1894675 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22418 2 -   141584 TC
i caeSp111.Scaffold567  I 126 C 0
s caePb3.Scfld02_0       3298076 2 +  4147112 TG
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   443291 286 +   591668 I

a score=76498.000000
s ce10.chrX              5038795 365 + 17718866  
s cb4.chrX              10377102 362 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1894677 362 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22420 358 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3298078 355 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   443577 403 +   591668  
i caeJap4.Scaffold17934 I 286 I 39

a score=-9082.000000
s ce10.chrX              5039160 32 + 17718866 TGCAA------GCGAGGGGG----G---AGCACTGGTGATTGGCT
s cb4.chrX              10377464 45 + 21540570 ATCAACACGCCAGAACACGGACCCgtttaaaactgaaatatcAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1895039 41 -  4500979 AGCTGTGTTCTCGGAGAAGG----GGATAGCCATGAAAATTGAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22778 38 -   141584 TGTGACAATTTGTCGGAAGG----G---AGCAGAGGCAATTCGAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3298433 29 +  4147112 --CGACAAG-----AGGAGG----G---ATCCATGTCGATTCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   443980 39 +   591668 I

a score=45284.000000
s ce10.chrX              5039192 182 + 17718866 G---AAAATTGGCTGAAATT--GCGTT----TAGACAGACGTTCGTAA-------GAACTGTATTGGGATGATGATGA------TG-----CAAGAAATTCAGTGTAGT-TCAAGTTGACAAACACCACAATCTTACG-TTGGCTC-TCGTTGAACCAATCGGGAAGCT-------------------GCGTGCTCGTGGAGTAGTTGTAG-GAGGACAAAAACTAACAGGA
s cb4.chrX              10377509 194 + 21540570 GATTTAATATGGCTGAAATTCACTGGAACTGTAGAATTGAAACCAGTGATATACCTAACTGT-AAGGAAAGATGATCA-------------AATGAA---GAGTTTGGT-TGAAGTTGACAAACAC--------TACGTTTGGC---TCATTGAACCAAT-GGGAAGCCAAGGAAT-GGTCGAGA---GTGTGCTCGTG----AGTAGTAGTGGGTaaaaaaaCTAACAGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1895080 167 -  4500979 G---Caaattagctgaaatt----------------------ccGATG------CGAACTGT---GACAAGATG-----------------AGTGGAATCGAGTGTGGT-TGAAGTTGACAAACAC---AATCTTACG-TTGGC---TCAATGAACCAAT-GGGAAGCT-AGGAAT-GATCGAGA---GTGTGCTCATAAAGCAGTGGtggcgagaaaaaaaactaacaggA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22816 186 -   141584 T---TGAATTAGCTGAAATT--TTGGG----TGGAATTGTGTTCGACA-------GGACTATTAAGAAGAGGAGAT---------------GAACGAGTCGAGTGTAGTAAAAAGTTGACAAACAC---AATCTTACG-TCGGCTCATCATCAAACCATT-GGA----T-AGGAAT-GGTCGAGA---GTGTGCTCGTAGAGCAGTAGGAg-gcagaaaaaaactaacagGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3298462 191 +  4147112 ----CAAAttagctgaaatt--tcaaa-----ggaAATGCGTTCAAAACGA---CGGACTGTGACGAAAAGATGAG---------------GGGGGAATCGAGTGTAGT-TGAAGTTGACAAACAC---AATCTTACG-TTGGC---TCATTGAACCAAT-GGAAAGCT-AGGAAT-GGTCGAGAGTGGTGTGCTCGTGGAGTAGTAGCGG-CAGTTAAAAAACTAACAGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   444019 184 +   591668 G---AAAATTAGTTGAAATT--CCGGC-----AGGGGTGTTCTCATTC----TTTGCGCTGC--AAAAATAATGATTGGCCAAATGAGTACGAGAGAATGAAAGTCATT-TCAAGTTGACAAATAC---A---------CTGGG---TGATTGAACCAAA-------CT-ACGAATCAGTGGAGA---GTGCGCTTGTAAAGCAGGA-----AAACCGCAGAACCAACAGGA
i caeJap4.Scaffold17934 I 39 I 429

a score=-83613.000000
s ce10.chrX              5039374 764 + 17718866  
s cb4.chrX              10377703 449 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1895247 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     23002 526 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3298653 563 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   444203 429 +   591668 I

a score=130720.000000
s ce10.chrX              5040138 228 + 17718866 TCCGGTAAATGTTTGC-------------GGTCCACAAAAGTGCAC---ACAGTCGGCGGTGAAGACGTAAA-GGTGCCCCTCCCGAAAATAA----AGGAGGGCGGA-----GGAGTGCATGAAGAAG-AGGAAGTGACCCACATTAACCTCCC----------------------------AACCACAC-TATTTACTCGCAACAC-TATTAATACAGTTCGCGC---TTGTAAAGAAATTGGGCATTTTG---------CAAAATGCGG---GAC--ATAGTGACG-------------GCTGTTGGAAAAC
s cb4.chrX              10378152 271 + 21540570 TCCGAGTAATGTTTGCAGGGAA-------AGTCCACAAAAGTGCAC---ACAT-----CG-GAAGACGTGAA-CCT---TTTCCCGAAAATAG----AGGTGGGCGGGGACA-GAAATgaatgaagaag-aggaagtgACCCACATTAACCTCCCCATTTTCCCTCACCGTTCCCTTTCTACCGTCATCACGTATTTACTTGCAACACATATTAATACAGT--ACGC---TTGTAAAGAAATTGGCCATTTTA----------GAAATGCGC---GTCGGACGACGACATGAACACAAAATGACAGTTAGGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1895803 240 -  4500979 TCCGGTAAATGTTTGCAAGAGACCGCCACAGTCCACAAAAGTGCAC---ACAC-----GGCGGAGACGTGAA-GGTG--CCTCCCTAAAATAG----AGAGGGGCGGAGA----GTAtgaatgaagaag-aggaagtgaCCCACATTAACCTCCC-------------------------ACCACCCCCACGTATTTACTTGCAACAC-TATTAATACAGT--ACGC---TTGTAAAGAAATTGGGCATTTTG----------AAAATGCGC---GAC--ACAGTGACGCGGA---------GCGGTTAGGAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     23528 259 -   141584 TCCGGTAAATGTTTGCAAGAGACAGTTGCTGTCTACAAAAGTGCAC---ACAG-----CGCGGAGACGTAAAGGGTA--CCTTCCGAAAATAGTCCTAGGAGGCGGGGTA---GAcgtgaatgaagaag-aggaagtgaCCCATATTAACCATCC---------------------CCCTCCCCCACACACGTATTTACTCGCAACAC-TATTAATACAGT--TCGG---TTGTAAAGAAATTGggcattttg----------aaaatgcgc---GAC--GCGGTGACGACGAGAGAAAGAGTCGGTTAGGAACC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3299216 237 +  4147112 TCCGGTAAATGTTTGCAGGAGACCATTGCTGTCCACAAAAGTGCAC---ACAG-----GGAGGAGACGTAAA-GGTG--CCCCCCGAAAACAGGCCTAAAAGGGGCGGGAGGTGACgtgaatgaagaag-aggaagtgaCCCACATTAACCAC---------------------------------CACACGTATTTACTCGCAACAC-TATTAATACAGT--ACGC---TTGTAAAGAAATTGGGCATTTTG----------GAATTGCGC---GAC--GC------------ACAGGGCGTCGGTTAGGAACC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   444632 244 +   591668 TCCGGT-AATGTTTGCAAGACAAGAAAGAAG-----GAAAGTGCACCGAATAA-----AGAGAGGAGGTA---TGTA--CCTCCCG-----------AAAAGGTCGGATCGTTGGTAGGCATGTGGAAACAGGAAATGACCCACATTAACCACTC--------------------------CCCTCCCCACGTATTTACTCGCAACAC-TATTAATACAGT--GCGCTTGTTGTAAAGAAATTGGGCATTTAagaagtgaaatgaaatgcgtggAGAC--ATACTGACG-------------AGCGCAAAGAGGC
i caeJap4.Scaffold17934 I 429 I 12

a score=-4075.000000
s ce10.chrX              5040366 26 + 17718866 CCTACCTACT-GGGTTTCCTTTCA-ATT
s cb4.chrX              10378423  5 + 21540570 C-------TA-GG---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1896043 24 -  4500979 C--ACCCATA-AGGTCTCCATTCT-TGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     23787 24 -   141584 T---ACCATA-AGGtctccattctcttt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3299453 25 +  4147112 T---ACCATAGGGgtttccattctcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   444876 12 +   591668 I

a score=143843.000000
s ce10.chrX              5040392 247 + 17718866 TCTATTGTATTTGGA-----GACATTAACTTTTCCGCAAATAAGAC----CTTTG--ACGAAACAC---AACTTGAGAGTA-----AAACGGCGGTC--TCT-------------CCGATTAAAGGTGTTCCTCAGAAAATGGAAAA-------------TGGAGGAATGAAATCGGGAGAGTACACAATACTCAATG-CTTTGAAAACCTCTTGGAACTAGATTAACCGGGGATTACTCATAGTTATAAAAGTTTATAAACACTTCTGAAAA--AG------------TGGTCAAAGCAGTGGGCGGT
s cb4.chrX              10378428 259 + 21540570 -CCATTGTATTTGGAGGGAGGACATTAACTTTTCCGCAAATAAGACGACGAGTTGAAACGAAATACTAAAACTAGAGAGTAAATCGAAAT--Cggtc--tctctttctttctctcccGATTAAAGGTGTTC---------GCGAAAATGAGCGAGTTAGTTG--AGAGTGAAATCTGGTGGGTACACA----------------CAAACCTCTTGGAACTAGATTAA-CGAGGATTACTCatggttttcaagttttataaACACTCCTGAAAT--GG-------------GGTTTGAGGTTTTATTG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1896067 228 -  4500979 CCTATTGTATTTGGA-----GACATTAACTTTTCCGCAAATAAGA-----GGTTG--ACGAAACAC---AACTTGAGAGTA-----AAAT--CGGCC--TCT-------------TCGATTAAAGGTGTTC----------CGAAAA-------------TG--AGAGTGAAATCGGGAGAGTACACA-------ATT-CCTTGAAAACCTCTTGGAACTAGATTAA-CGAGGATTACTCATAGTTCTAACG-GTTATAAACACTCCTGAATA--AGCGAGG-----GCCGTTTTGCAGTTATGGGT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     23811 224 -   141584 tcttttgtatttGGA-----GACATTAACTTTTCCGCAAATAAGA-----GGCTG--ACGAAACAC---AACTTGAGAGTA-----AAAT--CGGTCTTTCT-------------CCGATTAAAGGTGTTC----------GGAAAA-------------TG--AGAGTGAAATCGGGAGAATACACA-------ATG-CTTCGAAAACCTCTTGGAACTAGATTAA-CAAGGATTACTCATAGTCCTAAAG-TTTATAAACACTCCTGAAAAGCGG------------CGTTTTC-GTCTCTGATG--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3299478 223 +  4147112 tcgATTGTATTATTG-----GACATTAACTTTTCCGCAAATAAGA-----GGTTG--ACGAAACAC---AACTTGAGAGTA-----AAAT--CGGTC--TCT-------------CCGATTAAAGGTGTTC----------GTAAAA-------------TG--AGAGTGAAATCGGGTGAGTACACA-------ATG-CTTTCAAAACCTCTTGGAACTAGATTAA-CGAGAATTACTCATAGTTCTGAAG-TTTATAAACACTCCTGAAAA--AG------------CGGTCCCGGCCTTTGGTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   444888 230 +   591668 TCCATTGTATTTGGA-----GAAATTAACTTTTCCGCAAATA---------------AAGGAACAC---AACTTGAGAGTA-----GG----CCTTT--ACT-------------CCGATTAAAGGTGTTCGGTTTAGATTGCGAAA-------------TG--AAAGGGAAATCGGAAAAGTACACA-TATACAATGCCTTTGAAAACCTCTTGGAACTAGATTAA-CGGGGATTACTTATTGTTCTAAAG-TTTATAAACACCCGTGTCGG--AGCAATAAAGACGCTGGTCTGT------------
i caeJap4.Scaffold17934 I 12 I 65

a score=-9416.000000
s ce10.chrX              5040639 42 + 17718866 TACGGACCACGTTTATG---ACTCAC-------AGCGGGCCAAAGCATCAAC
s cb4.chrX              10378687 30 + 21540570 ----GGGGGA----ACG---TCTCAC-------CAGAATTTA-GTCAGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1896295 40 -  4500979 ----TGCAAA----CTG---ACTCACGCCCACATAAACCTTATGGTAGCCG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24035 40 -   141584 ----GACCAATTTTATGGCCAACAAC-------CGTGCATTGTGGTTGTCC-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3299701 41 +  4147112 TATTGACCGGCTTTATG---AATCAT-------AGAACCTTATGGTAGCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   445118 65 +   591668 I

a score=89032.000000
s ce10.chrX              5040681 333 + 17718866 CAAGACCCTA------------------------------AA-CGACATTACACT--------CGGATCTCG---CTAGGTCCGTGAGAACGG-GAAAAATG-------AGCGAATTCTCGTCCCAG-AATTATCAAATCTACTCCTGAAGTAGAACCAGATGTTGAGTGGATAAGTGGGGTGAGTTTGCTAACTATCAATTTGCGGATAGTGC-ATACTGCCTTCGCGCAACGAACAG-AGATACTCGAGGGAGGAACTGAAGGGAAAAAAAAATTGAGCAATGTTAGGGAAACCAA--CCAAACTTGCGTATTATCACTAGCGCAACACTC--GATTTGGATGG-------------------AAATCGTCGGCATTTTT---------------------TAAGGGTA-----------------------AACAATCTC-------GAGTACTCAA
s cb4.chrX              10378717 269 + 21540570 --AAACCCTA------------------------------AA-CCATATTACAC--------------ATTC-----TGTTCCacgaaaacaa-aagaaaagaaaaatgaac----------------cgTTAT-GATTCCCATCCTGAAGTAGAACCAGATGTCTAGAGGATAAGTGG-CTGAGTTTGCTAACTATCAATTTGCGGATAGTGCAATACTAC----------CGAACAC-ACATACTC----GAGACGAGAAGGAAAATATGGA-------------TGAGACAAAAA-----------------ATCAAGGAG-AATATCTA--GCATAGCGT----------------------------CAATTCTTTT---AATGCACC-------AAGCA-----------------------------AACAATGCTCA-----GAATTCTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1896335 365 -  4500979 -AAGACCCTA------------------------------AA-CGACATTACACT--------CAGGTCTTG-----AGGTCCGTGAGAacga-taaaaatg--aaatgagcgCATTCCGCTCCCA--AATTAT-GATTCTCATCGCGAAGTAGAACCAGATGTCGAGAGGATAAGTGG--TGAGTTTGCTAACTATCAATTTGCGGATAGTGC-ATACTGCTTTCGCGCGACGAACAG-AGATACTCAAAAGAAATAtgggagaaaaaatggagattg--------tGCAACACTAAACGTAAACCTGCGTATTATCAACCAGCAAGAACTC--GATTTGGGTTG--------------------TCTAcgcattttttct---attttggc-------AAACACAAATATTCTGGTGGAAAGGGAATCACAGAATAATTCTCAAGAACGAATTTAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24075 338 -   141584 TAAAACCCCA------------------------------AACCGACATTACACT--------TGGGTCTTG-----AGGTCCGTGAGAacgtgaaaaaaga--aacgaagcGCATTCCTCACCCA--AATTAT-GATTCTCATCCTGAAGTAGAACCAGATGTCGAGAGGATAAGTGG--TGAGTTTGCTAACTATCAATTTGCGGATAGTGC-ATACTGCCTTCGCGCAACGAACAG-AGATACTCAAAAGATATATgggggaaaaaagaggaaa--------------cggCGAATCCTAAACCTACGTATTATCACTAGCGCAGGACTC--GATTTGGGTAC-------------------AGCAGCACGCTTTTTTC---GCACCAAC-------ATGCAAAGGTA-----------------------AATACTGTTTTTGA--GAGGGCTCTA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3299742 340 +  4147112 TCGTATCCTA------------------------------AA-CGATATTACACT--------CAGGTTTTA-----GGGTCcgtgaga-----gaaaaatg--aattgagcGCATTCCTCACCCA--AATTAT-GATTCTCATCCTGAAGTAGAACCAGATGTCGAGAGGATAAGTGG--TGAGTTTGCTAACTATCAATTTGCGGATAGTGC-ATACTGCCTTCGCGCAACGAACAG-AGATACTCgaaagaaatatagaagaaaaacgaaaaaaga--------agagaagcaaGGCTCTAACTTGCGTAATATCACAAGCACAACACCCTTGATTTGGGCCG-------------------AGCGg--cgtttttttccttttccttac-------AAGCAAA-GTA-----------------------AACAGTATTCTAGA--GAATCCCCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   445183 410 +   591668 CGAGGCCTTATGGTCTTGAGTACATTATAAAAGAAAATATAA-CGACGTTACACTGCCTCAAGAAGATCCTGAGAAGAGTGCCACGACTACGC-AAAATGGG--TTCTGCTCGCTCTCGTTCGCCAATTATTATTCATTCCCACCTTGAAGTAGAATCAGATGTTGAGAGGATAAGTGTGCCGAGTTTGCTAACCATCAATTTGCGGAGCCGAT-TGGCTGGCTTTGCGCGACAAGGAACAGATACTCGACTTTCGCAAAAAATGAGAATGGGCAAGGC--------AGAATCATCACCGCAGAACTTGCGTAATATCAC-----CAACACTC--GATTTGGATGGTGGTGGAGATGGAGATGCAGTCTGCGCTCTTTTTTG---CGTTCTGCGGCTTTAGAGCAAAAGTC-----------------------AACAAAAGTCTTGG--GCATTCTG--
i caeJap4.Scaffold17934 I 65 I 71

a score=-20919.000000
s ce10.chrX              5041014 72 + 17718866 AATGGACTCAGGATTGGAAGCTTTGGGAATCTTAATACGTTCAATTTTCTC-----AGGGCTCATGAAA-----TGTTC-------------ATT
s cb4.chrX              10378986 50 + 21540570 AGAG------GCATTAGAAGG---------------------GTTGTTGAT-----CAGAAAATCTAAA-----TGGTC--------CGGACATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1896700 71 -  4500979 ACAA------GTGCTCGAAAATATCGCAATTAA--TA---TTGTTTTGAGT-----CCAACATGCTTAATCCCGTAAAC--------CGGACGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24413 69 -   141584 AATG------------GAGAATTTCTTAGTGTG--TAC--CTATCTTCATT-----ATGGACACTCTAA-----TATTCTTAAGCTTCCACCATA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300082 73 +  4147112 AACA-------TGCCcgcaactttcaaaacttgactAT--TCATCTTAATTTATTATTGGGATCTTTCT-----CATTC--------CCACCATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   445593 71 +   591668 I

a score=18041.000000
s ce10.chrX              5041086 69 + 17718866 AGGAAGG--CAGTGA-----TGCACGAAC---CAGTTGCAAGCAT-AACAACCCCCTAATTAATCGTCAGGT-AAGCGTCC---
s cb4.chrX              10379036 53 + 21540570 AGGTA-----GGTGA-----TGCATGCA------------AGACT-AGCAA-CCTATAATTAATCGTGAGAACTTGC-------
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   1896771 63 -  4500979 AGGTGAG--TAGTGA-----TGCATGCA----CGCTTGCTAGCAT-AACAA-CCTCTAATTAATCGTGAGAA-TTGC-------
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold567     24482 59 -   141584 AGGTGGA--AAAAGA-----TGCATGCA------------AGCAT-AACAA-CCTCTAATTAATCGTAAGAA-TTGCATGT---
i caeSp111.Scaffold567  C 0 I 17
s caePb3.Scfld02_0       3300155 61 +  4147112 AGGTGGAGGAGAGGA-----AGCAGGAA------------AGCAT-AACAA-CCTCTAATTAATCGTAAGAA-TCGCATGT---
i caePb3.Scfld02_0      C 0 I 122
s caeJap4.Scaffold17934   445664 80 +   591668 AGGAAGA--GAGTGAATGCGAgcatgtacatacatacataaacATAAATAA-CGTGTAATTAATCGTGAGAT-TTGCGTGTTCC
i caeJap4.Scaffold17934 I 71 C 0

a score=-21294.000000
s ce10.chrX              5041155  56 + 17718866 ---------------------------AAACATTAAGCTC-------------------GGACAT----------TTATAACACGCGAAGTA-----AGAC------AAATTCAATTCGA--------------ATT-
s cb4.chrX              10379114  33 + 21540570 ---------------------------AAACATTGA-----------------------GGTAATG------------AAGCTAGttggaca------------------------------------------att-
i cb4.chrX              I 25 I 27
s caeRem4.Crem_Contig0   1896861  69 -  4500979 ---------------------------AAACATTGA-----------------------GGAAATGGGATGG---TGAGAATTCGTTATACA----TGAAT--------ACTTGATTAAGGTAAA---TTTGGGATT-
i caeRem4.Crem_Contig0  I 27 I 85
s caeSp111.Scaffold567     24558  60 -   141584 ---------------------------AAACATGTC-----------------------GGAAATGAGTTGAATCTTAGAAATAGCCAAATG-----AAGC--------tgtcaataaaa--------------att-
i caeSp111.Scaffold567  I 17 I 22
s caeJap4.Scaffold17934   445744 138 +   591668 ATTCGTTTCCTTTTAAACAAGCTACCAGGACATAAATTTCTAGAGCTAATGAGCAAGTGGGAAACGAAACGGACATGAAAGCAACATGAAAATTATTAGGCTCGGAGAAGTTCTGTTCTGCTAACGATTCCTAgattt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3300216 122 +  4147112 I

a score=73870.000000
s ce10.chrX              5041211 280 + 17718866 ATTTTTCTGGAAAAATTAGTTCAAAAGTGTAC---------GAAAAT-----------TCTGAT-----------AAAAA------------------------TTGAGAACGC----A--TACTGCAGTAG-CCTGGTCAAGG--------------AGTTAGTAGG----------ATATAGAGGG--TGGGTGTACAT-GGAATCAACACAGTAATTGAATAAATCTA-CACTG-----------CACATGATTC----T----------AGG-GGGGGTGAACAACCACTTGAACAAGGCTCTA-----------------AGCCCAGGCGGCTCATTAATAAACTCTCGCACTGGGAGGTCGAAA--GAAACAATACATATT--ATA-------CAAGGGAGGTCCCCACTGGACTTGA-----------
s cb4.chrX              10379174 325 + 21540570 CCAGAGCaatcaaac----caaaaaagtcgtt------ttttgaaatgcaCCTATT--GTTTAC-------------AAA-----------------AGAC---TTAGCGCTTGCAATA--CTCTGTACAA---CTGGTCAAAA--------------AGACCCTATACATTGACT--ACATAAATTTCCTGGGGGTACATGGAAATCAACAAAGTAATTGAATGAATCTGTCTTTG-----------GACATGATTCGGT-TCCGGGAGAAGAGATTGAGACGAACAACCACTTGAACAAGGCTCTAAATCTCCTCCTCCCAATAGCCCAGGCGGCTCATTAATAAACTCTCGCACTGGGAGGCCCCTATCGAAACATTACATATTGAAAA-------CAAGGGT--TTCC-----------------------
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1897015 314 -  4500979 TTAGCACTGTGAagatttgcaaaaaagtgcCTGGGTAGTTGTGAAATAAACTTTAT--GTTTACAATAGTTTCCTAAAAA-----------------TGGC---TTAGCTGCTG----G--CTTTGTACGA---CTGGTCATGG--------------AGTCACTACCGCCCGTCT--A-----------TGCGAGTACAT-GAAATCAACAAAGTAATTGAATAAATCTG-CACTG-----------GACATGATTC-TC-TCCGGGTCCACAGA-GGGGACGAACAACCACTTGAACAAGGATCTAAA---------CCCA--AGCCCAGGCGGCTCATTAATAAACTCTCGCACTGGGAGGTCGTTG--GAAACAATACATATT--CTA-------CAAGGGT--TTCT-----------------------
i caeRem4.Crem_Contig0  I 85 C 0
s caeSp111.Scaffold567     24640 305 -   141584 ctagaaattgatgaaagtAACAAGAAGTACAC----------GAAAT-----------GTTTAC-----------AAAAATGTTCCTAGAAGTTGTTTGAC---TTGAAAGAGC----AGGCCTAGTACAA---ATGGCCACGG--------------CGTCTTTACA---TTTCTGAG-----------GGCGGGTACAT-GGAATCAACAAAGTAATTGAATGAGACCGCATTTG-----------GATATGATTCTCTCTCCGGAGGCAGAAA-AAAGGCGAACAACCACTTGAACAAGGCTCTAAA---------CCCT--AGCCCAGGCGGCTCATTAATAAACTCTCGCACTGGGAGGCCATTC--GAAACAATACATATT--CTA-------CAAGGGT--GTCC-----------------------
i caeSp111.Scaffold567  I 22 C 0
s caePb3.Scfld02_0       3300338 287 +  4147112 TCGGAAATgtaaaaagttgttgaaaaataaac----------ttgat-----------GTTTAC-----------AGAAA---------------GTTGGC---TTAGTATATA----A--CTTGGTACGA---CTGGTCAAGG--------------AGTCCCAACA---TTTCT--A-----------GGCGGGTACAT-GGAATCAACAAAGTAATTGAATAAATCCGCATTCG-----------GACATGATTCTCT-TCTGAAGGCAG-AA-CAAGGAGAACAACCACTTGAACAAGGCTCTAAA--------TCCCT--AGCCCAGGCGGCTCATTAATAAACTCTCGCACTGGGAGGTCGTTG--GAAACAATACATATT--CTA-------CAAGCGTCCACCC-----------------------
i caePb3.Scfld02_0      I 122 C 0
s caeJap4.Scaffold17934   445882 325 +   591668 atatatatatatatgcTT-CTTTGAAGCCTTT----------AAGACCCATCATactagtttaa-----------aaaaa---------------agtagcATTTGATGAGCGC----G--ACCTATATAAGCCATGAGCAAGGAAATAGAAATCCAAAGACACGATG----------A-----------CCAAACCACAT-GAAATCAACAAAGTAATTGAATCATTCTGCGTTTGGAGGCCCAACCGACATGATTTCAT----------------CTACCCGAACAACCACTTGAACCAAGCTGGATA---------CTCT--AACCCATACGGCTCATTAATAAACTCTTCCCCTGGGTGGTCGTTG--AAAACAATACATATT--CTATCTACAGCAAGGGT--GCCC------------ACTTAACACGA
i caeJap4.Scaffold17934 C 0 I 8

a score=-6608.000000
s ce10.chrX              5041491 11 + 17718866 GAGGGG---------GGTC--T
s cb4.chrX              10379499 18 + 21540570 --CGGAACGGACCCCAGGC--T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1897329  9 -  4500979 --GGGG---------CAGC--T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24945 11 -   141584 --GGGT---------AAGTCGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300625 11 +  4147112 --TTTC---------CTCCCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   446207  8 +   591668 I

a score=18850.000000
s ce10.chrX              5041502 156 + 17718866 GAATTAATT------TGTCAATGCATGAAGTCATGGTTTATTG-----CAAACTGATACATAGACGCAT--GCCCTCAATTTGATACACTTTAGTAAATTGGTAG-GGCTCACAGAGTTCATGAATTACAAAC---A--------------------CTGAAAGAAA---AATTC---------------------TAAA----AATTG---ACAAATT---------ATCGG
s cb4.chrX              10379517 145 + 21540570 GCATTAATCCGGTGGTGGCCATGCATATAG--AGAGTCTTTGA-----AAAACCCGAAAACA---------ATTTACATTCTGATACACG-----------------------AGAGTTCATGAATATCCAAGTTGA--------------------AGGGTATAAATTGGATGT------ATCCGGA--TGCCTCCGTG----CTAGA---ATAAATT--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1897338 180 -  4500979 GAATTAATT------TCTCAATGCATAGGGCAATGGTTTATAG-----CAAACTAATACACAT--------ACTCGCATTGTGATACACTTTAGTGGATTGGCCT-AACCGCCAGAGTTCATGAATATTGAATTTGA--------------------GTAAAATAAATT-GCTGTTTTTCGATCCGGgcttttcttcgaa----ttttg---agaaatt-----gaaaattga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24956 177 -   141584 GAATTAATT------TTGCAATGCATAGAGCAATGGTTTATTG-----CAAACTGATACACAT--------ATTTGCATTCTGATACACTTTAGTGGATTGGGGCCAACCAAGAGAGTTCATGAATAGTGGATTGGA--------------------ATGAAACAAATG-GGTTT-TGTAGGTCCGGA----GTCTGGAA----CAATG--CATAAATG-----GGGGAAAAg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300636 183 +  4147112 GAATTAATT------TTGCAATGCATAGAGCAATGGTTTATTG-----CAAACTGATACACATACACCCGCATTTGCATTCTGATACACTTTAGTGGATTGGTTT--------GGAGTTCATGAATACCAAATTTGA--------------------GTAAAATAaatg-gattt-ttcagtttc---------ctgaAAGCACCAATGTTCATGAATGATTTAGTTGActgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   446215 154 +   591668 GAATTAATT------TTGCAATGCATAGAGC-ATGGTTTATTGTCCACCGAACTGACTGATATACCGC---ATTTGCACTATGATAGGCTTTTGTTG--TAATAG--------GGACTTCATGAATGCTTGATTGGACATATCATGGCAGAAATTGTCTAAAACAAATT-GCAAG----------------------------------------------------------
i caeJap4.Scaffold17934 I 8 I 132

a score=-2247.000000
s ce10.chrX              5041658 50 + 17718866 AGATAT---------------------------GTCGAGTT------TAGC-CATCTCAACTTT------GAAA-ACTGTTG-TGAGTGTTA
s cb4.chrX              10379662 49 + 21540570 --------------------------AAAGGAAAAC---------GATAGCTGATTTGAACTTT------GGGATGTTGGATACCAGAGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1897518 81 -  4500979 aaattcatacCACTAGCTCaagataaaaaggaaaataagTTCAAAGATAGC-GATCTGAACTTT------GAAA-ACTGTAT-CGAGTGT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25133 63 -   141584 gaaca----------------atgaaaaacaaaatcgaGTTCAAGAATAAT-GATCTGGACTTT------GGGA-ACTGCAT-TGAGT----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300819 73 +  4147112 aaatgt--------------tttggaaaagaaaaataagttcCGAAGAAGT-GATCTGAACTGTATCAAAGGAA-AGTGTAT-CAAGTGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   446369 132 +   591668 I

a score=69741.000000
s ce10.chrX              5041708 73 + 17718866 GAG-----AGATAAGAT--AGGAAGT---AGCGAATTTTTGCGTGGGGCTTCTATTTGCTCACTCTAGTGCGTCAGATCATCA
s cb4.chrX              10379711 80 + 21540570 AAGATAGCGGATAAGAAATGGAAAGT---AGCGAATTTTTGCGTGGGTCCTCTGTTTGCTCAACCAAGTGCGTCAGATCATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1897599 73 -  4500979 GAG-----GGATAAGAA--GGGAAGT---AGCAAATTTTTGCGTGGGTCCTCTATTTACTCAACCAAGTGCGTCAGATCATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25196 73 -   141584 GAG-----AGATAAGAT--GGGAAGT---AGCGAATTTTTGCGTGGGTCCTCTGTTTGCTCTCATAAGTGCGTCAGATCATCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300892 76 +  4147112 GAG-----AGATAAGAT--GGGAAGTAGCAGCGAATTTTTGCGTGGGTCCACTGTTTGCACACCTAAGTGCGTCAGATCATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   446501 72 +   591668 gaa-----aga-aaaaa--aaagggt---agAGAATTTTTGCGTGGGTCCTTTGTTTACTCAACCAAGTGCGTCAGATCATCA
i caeJap4.Scaffold17934 I 132 I 29

a score=-59947.000000
s ce10.chrX              5041781 267 + 17718866 GCAAATTGATTGAACGA--AAAAAAAGAGAAAA-------TTGTTGGTACTTTTCACCATTATATGAAGTGTTATATTTTCATAGCTAT------------TTTGATTTTGGAACTGTGGCTGAATGATATTTCCTAGTTAT--------------AGTGAT--GATAGTC---------TCAAAA----AAAGTTGAATAAAAAGATTTG------------------------------GTGTAGACGTTTTTATA------------------------------------------------------------TATGGGCTCTTGTTTAGAGAGTTTTTGAAATTGCTCAT--------TAGTAAT-------------------------------------------------GGTTATGTAAGTTAGACACATTGATTTAGCTTACT-------------TCTAATAAA
s cb4.chrX              10379791 341 + 21540570 ACAAATTGGATGAAGGagtaaaaaataagaaaagggAAATTTAGGGGCACTTTTCACTGCGATC--AAGTgttctattattttt----t------------attaatatga------------aatgttgtttttttattagaatttCTCGAATGTTTCgattaaaaatta---------ataata----gAAGTTACGGTAGCAATTTTT------------------------------CGGTATCCGCTGCAATA--CACAAC----------------------------------------------------TCTAA---------CAGTAAATTATTGTACACTTTCACGCTGAccacaattatctcggttcatatgTATCGTAttccctttaatagaagcactttcaaaaaaaaaaaaagaatcgagACAATTGCGCTCAAAGTTTACGATTTGGGTATCAGGATgaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1897672 177 -  4500979 AC-gatttgatgg------aaaaaatgagagaa-------ttcaGGACACTTTTCACTTTGGTC--AAGTGttatattttcttc---at------------tttgatctGG------------------------TTATCaa---------------tcgatctgaaatt---------------------------------ttgttttt-------------------------------------------------------------------------------------------------------------------------------gttcttgTAGA-TCCCAC--------CAATAATC--------------------------TAATATATG-------------AAATAAAGgatctgaaaactttcatttgaatttca----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25269 149 -   141584 ACtaattgataga------aaaaaatgaggag--------tTTTAGGCACTTTTCACCACGGTC--AAGtgttctattttcatt----t-----------------------------------------------aattaa----------------------GACATTC---------ACATAA----AATgtt-------cgcttttt------------------------------ttttaaacatttcaCTT------------------------------------------------------------TGAAG---------TGCT----------------------------------------------------------------------------------GAAactagatgaaaaaaaatc--------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3300968 403 +  4147112 ACTAATTGatagg------aaaaaatgaggag--------ttTTAGGCACTATTCACCGCGGTC--AAGTgttctgatttcatt----ttttttttcaattttggataATG------------ATTGATCTCATTCAATTCA----------TCGTGTGGATT-GAAATTCCACCGAGCGACAAAATTTTAAGGtc-------tatattttcaaagttaaaggtggtggaaacTCTCGTCGCCTTGAACCTTGCATTCAGTGCAGCCGGTAGCGCTAATGGCGTTCTGCCAAACGGGCTCTGGCTcctttttgaatgatgaag---------TACTCAGTTTCTTAACACTATTAGGGAGCATACAATAAAATCCCATAGCCTTTTCGGAAATTACC-CAAGCCAAGTACCCt-gaacaaaattcaataatcGCAAATCTGCTAACCATGTTATG-------------TACAGAATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   446573  29 +   591668 I

a score=-44217.000000
s ce10.chrX              5042048  89 + 17718866 AGGTTTTT--------------------------AGGTCA-TATTTTTAA-----------TAATTCACTTA----------GCCATA---TTACAAAAAT--ATATATTT---------------GTATATATGATACTTGTGTGTAGTTGATTTA
s cb4.chrX              10380132 130 + 21540570 agatatcaaagttttctaTACGATTAGAAACGGTGTGTCA-TAGTGCCAACGCCTTCAGTTTGCAACATTTT----------CTAATTGC-TAACgcaaatcgaaataatt---------------gggCTAAAGATGCAAGTATAGGATTGCTtca
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1897849  51 -  4500979 ----------------------------------atggCA-TAGT-----------------------TTTA----------CTAATAATATAAAGAAAGCAGAAATGAT--------------------------------Tatctagtt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25418  36 -   141584 -----------------------------------------taatttcaa--------------------tA----------CAAACT---TAAATTAAGT-GGAAAAGTT----------------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3301371 118 +  4147112 AGATTTTAGAATTC--------------------GTTacattaatttcaaatttttaa---tgcATCGATTT----------TAAAGT---TTAATTAAATCGGCAAAATTACTGCACCTTTCAGTTGGTTGAAGTTCTTA-TATAGAATA--TTTA
i caePb3.Scfld02_0      C 0 I 21
s caeJap4.Scaffold17934   446602  79 +   591668 CGGTTTCG--------------------------GGCTCC-TAATTTTTA-----------TAGTTGTTTTAAAATGTTAATCCCATT---TTAAAAGGAT--ATAAAATT------------------------------ATATGCACTta-----
i caeJap4.Scaffold17934 I 29 C 0

a score=-6729.000000
s ce10.chrX              5042137 28 + 17718866 CCCCAAAATGTTCATAAATTTTGAAATT
s caeRem4.Crem_Contig0   1897900  2 -  4500979 --------------------------tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25454 13 -   141584 CGTCTGAA----------TTT-----TT
i caeSp111.Scaffold567  C 0 I 6
s caePb3.Scfld02_0       3301510 18 +  4147112 cttctgaa-----aacagttt-----tt
i caePb3.Scfld02_0      I 21 I 28
s caeJap4.Scaffold17934   446681 13 +   591668 --ccaaaa-----attgatt--------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10380262 35 + 21540570 I

a score=-10711.000000
s ce10.chrX              5042165 396 + 17718866  
s cb4.chrX              10380297 597 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1897902 367 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25473 346 -   141584  
i caeSp111.Scaffold567  I 6 C 0
s caePb3.Scfld02_0       3301556 405 +  4147112  
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold17934   446694 293 +   591668  
i caeJap4.Scaffold17934 C 0 I 37

a score=5621.000000
s ce10.chrX              5042561 25 + 17718866 GGGGAATACAG--CAGACCTTTGAGG-----------------------C
s cb4.chrX              10380894 49 + 21540570 -GAAAATACAGCACAGACATCTAAGGGGAatcgttttttctcttcttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1898269 27 -  4500979 -GAAAATACAG--CAGACCTCtatggag--------------------tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25819 26 -   141584 -GGAAATACAG--CAGACCTCTGtgggg---------------------t
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3301961 23 +  4147112 -CTAAATACAG--CAGACCtctgtga------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   446987 37 +   591668 I

a score=194578.000000
s ce10.chrX              5042586 249 + 17718866 CTTTTTTCTGGAAAG-TTTCAAGTGGTCATCTCTTGAGTAAGTTAAACATAGTTCGCTTCAGTGGTAACATCTCAAGAT--CACC------AGATA--AGAAACTCTTTACTTGTGAACAAGTCGCTTGAACTCATTGCGTTTTTT------------TTTCTCTCGTTGAAGCTT------------CTC------GAG-AAGGGATATGATGCTCGATGCACTGTGCGTTCATCTTTGCAAGGTCG-CGGATCACAGAAATTGAATGAGTGGTTG--------AATTTGAAGAGTGGG
s cb4.chrX              10380943 264 + 21540570 tttgtctctgGAAAG-TTTCAAGTGGTCATCTCTTGAGTAAGTCAAACATAGTTCGTTTCAATGGAAACATCTCAAGAT--CGCCCTCCATCACTA--CTAAACTCTTTACTTGTGAACAAGTTGCTTGAACTTATCGtttttttc------ggtctctctctctt-ccacTGCTC------------CTC------AAATGAGAGATATGATGCTCAATGCACTGTGCGTTCATCTCTGCAAAGTCGACGGATCAC------CGAATGAGTGGTCGGGAAGGCAGATTTGAAGAGTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1898296 243 -  4500979 tttttttctgaaaag-tttcaagtGGTCATCTCTTGAGTAAGTCAAACATAGTTCGCTTCAGTGGAAACATCTCAAGAT--CGCC-----TCACCA--CAAAACTCTCTACTTGTGAACAAGTCGCTTGAActtatcgtttttttt-------ttccttctctcttaTCGGAGCTC------------CTC------GGA-ATGAGATATG-------ATGCACTGTGCGTTCATCTTTGCAAGGTCG-CGGATCACA-AAATTGAGTGAGTGGTCG--------GATTTGAAGAG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25845 264 -   141584 tttttttctggaaag-ttTCAAGTGGTCATCTCTTGAGTAAGTCAAACATAGTTCGCTTCAGTGGAAACATCTCGAGAGATCGGC--------CCA--AAAAACTCTTTACTTGTGAACAAGTCGCTTGAACTCATCGTTTTTCCCccaatttctcattctctcttatCGTTGGCT------------Ttctcaagagag-aaaagatatgATGCTCGATGCACTGTGCGTTCATCTTTGCAAGGTCG-CGGATCACC-AAATTCAATGAGTGGTCG--------GATTTGAAGAGTG--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3301984 248 +  4147112 -ttttttctggaaag-tttcaAGTGGTCATCTCTTGAGTAAGTCAAACATAGTTCGCCTCAGTGGTAACATCTCAAGATTAGGCC--------CCAAGAAAAACTCTTTACTTGTGAACAAGTCGCTTGAActtatcgtttttttc-----------taCTCTCTCATCGTCGCTC------------CTC------GGG-AAGAGATATGATGCTCGATGCACTGTGCGTTCATCTTTGCAAGGTCG-CGGATCACA-AAATTCAATGAGTGGTCG--------GATTTGAAGAGTG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   447024 256 +   591668 tttttttctggaaagttTTCAAGTGGTCATCTCTTGAGGAAGTCAAACATAGTTCTCTCCGGTGGTAACATCTTGAGTT--GGTC-----TTGCCGTGGAAAACTCTTCATTTGTGAACAAGTCCATTGAacttatcatttttttt---------------ctctt-tcggAGCTCTAACTCCGAGTGCCC------GCA-AGGATATAGGAGCCTC----CTCGGCGCGTTCATCTCTATAAGA--G-CAGATCACA-AAAATCAATGAGTGGTGAAT------GATTTGAAGAGAGGG
i caeJap4.Scaffold17934 I 37 I 1304

a score=28823.000000
s ce10.chrX              5042835 127 + 17718866 ----T-GCAAAGAACTTTAGGATAGGGGACGACTGTAGTACAGAAAAAAACGACAA-TTTGTT-----------CGGAAACGATTGAGTGTGTGTCGATTTG--CGGAAA-TT-------GAAATGCAATATATA-GCAAAAGATCAAATGACAA
s cb4.chrX              10381207 126 + 21540570 TGGATGGAAAGAAACTCTAG----------GACAGTAGTAC---AAAAAACGACAATTTTGTT-----------CGCAAT---GAGAGTGTGTGTCGTTTCGGAAGGATATTT-TGGAT-AGATTGCAATGGATAGAGCAAAAATCAGaggacaa
i cb4.chrX              C 0 I 1229
s caeRem4.Crem_Contig0   1898539 110 -  4500979 ----TCGAGGAAAACTTTAG----------GACTGTAGTAC---AAAAAACGACAA-TTTGTT-----------CGGGAT-----GAGTGTGTGTCGATTTG--CGGATA-TT-TGACT-AAATTGCAATggatagatcaaaaattgaa------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26109 107 -   141584 ----T-TGGCAAAACGCTAG----------GACTGTAGTAC---AAAAAACGAC-A-TTTGTTAGAAACAGAGAAGagat---gtgtgtgtgtgtcgaTTCG--TGGATA-TC-AAACT-AAATCGCAATAGATA--------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3302232 108 +  4147112 ----TGGGGCAAAACGTTAG----------GACTGTAGTAC---AAAAAACGACGA-TTTGTT-----------TGGGAC---GAGTATGTGTGTCGATTTT--CGGATA-TTGAAACTAAAATTGCAATAGATATATGAAAA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   447280 1304 +   591668 I

a score=-98358.000000
s ce10.chrX              5042962 618 + 17718866  
s caeRem4.Crem_Contig0   1898649 282 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26216 367 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3302340 794 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold17934   447280 1304 +   591668 I
e cb4.chrX              10381333 1229 + 21540570 I

a score=-943.000000
s ce10.chrX              5043580 22 + 17718866 C-CGAATACTAGGCATCGTCAAT
s caeSp111.Scaffold567     26583  8 -   141584 CACGACCA---------------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3303134 29 +  4147112 I
e caeJap4.Scaffold17934   447280 1304 +   591668 I
e cb4.chrX              10381333 1229 + 21540570 I
e caeRem4.Crem_Contig0   1898931  0 -  4500979 C

a score=331.000000
s ce10.chrX              5043602 3 + 17718866 AAT
s cb4.chrX              10382562 3 + 21540570 AGT
i cb4.chrX              I 1229 C 0
s caeSp111.Scaffold567     26591 3 -   141584 AAC
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3303134 29 +  4147112 I
e caeJap4.Scaffold17934   447280 1304 +   591668 I
e caeRem4.Crem_Contig0   1898931 0 -  4500979 C

a score=29659.000000
s ce10.chrX              5043605 176 + 17718866 TACTGGTTTCTGATAATCTGTATTAACTAATACAATTGCAACATACCCATTTCCTTCAGTTG--CCAAAAAAAAATCTGGTTTGTGGATACCC-GTTTTTCCCCAAA-----CATCGGATATTATCAAAAATATAATGT---------GGTCAAAACAAGCATTTTTCAGTTTTCGTATTAACGGTCTCATAG
s cb4.chrX              10382565 162 + 21540570 TACTGGATCACGATCCTTCGTATCAAC----TTAAATGCAACATATCCA-GAATATCAACCGAAGTCACACGCTTTCTGGTTTATCCATACCC-GTTTTTGCCATCAT----CAATGGACAA---AATCTCCTTCTTTC-ATTAATCTGGTCAAAACAAgcatttatcagtttttt-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1898931 171 -  4500979 --CTGGTTGCCAATCAATTGTATTAACTCA-TCAAATGCAGCATCTCCT-TGTATTCAATCGTATT-----GGATTCTGGTTTGTTTATACCC-G-TTTTGCCAGCATTGGacatttgaaag---aaaaaaaatcattt-attatTCTGGTCAAAACAAGCATATATCAGTTTTTT-------CCTCATTGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26594 174 -   141584 TACTGGATCAAGATCAATCGCATTAGCTCTTCCTAAAGAAACATGTaga-ctttttcat-----ttcctaaACATTCTGGTTTGTATATaccc-gtttttttcttcctt---gaTTGGATAAT--GAGAAACATTATATAAATTTCGTGATCAAAACAAGCATatatcagtttttt-------attcttttag
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3303163 176 +  4147112 TACTGGTTCGAGATCATCCGCATTAACTCATCCTAAAGAAACATgcg----tttttcatttg--ttcctTAAGATTCTGGTTTGTCCATacccggttttttttctcttt---gattggataataagaaaaaaattgtat-aattcTATGATCAAAACAAGcatttatcagtttttt-------attctttcag
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17934   447280 1304 +   591668 I

a score=485216.000000
s ce10.chrX              5043781 824 + 17718866  
s cb4.chrX              10382727 868 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   1899102 830 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26768 804 -   141584  
i caeSp111.Scaffold567  C 0 I 2355
s caePb3.Scfld02_0       3303339 810 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   448584 771 +   591668  
i caeJap4.Scaffold17934 I 1304 C 0

a score=2851.000000
s ce10.chrX              5044605 28 + 17718866 ATTTATGTTACGGAATTTTAGTGCTTTT-----
s cb4.chrX              10383597 28 + 21540570 AGCTTTCTTCCGGTATCCTGATATGTTT-----
i cb4.chrX              I 2 I 4005
s caeRem4.Crem_Contig0   1899932 22 -  4500979 ---tattttccggta---taatttattt-----
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3304149 25 +  4147112 CTCCGTTTTCCGGTA---CTACTCTTTT-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   449355 30 +   591668 TTGTGTTTTCCGgta---taatctattttattt
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     27572 2355 -   141584 I

a score=-468.000000
s ce10.chrX              5044633 9 + 17718866 CTGTATGTA
s caeRem4.Crem_Contig0   1899956 9 -  4500979 ttgtatata
i caeRem4.Crem_Contig0  I 2 I 2677
s caePb3.Scfld02_0       3304176 4 +  4147112 TTAT-----
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   449385 9 +   591668 atgtttgcg
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10383625 4005 + 21540570 I
e caeSp111.Scaffold567     27572 2355 -   141584 I

a score=-115.000000
s ce10.chrX              5044642 12 + 17718866 ----TACTAATATTAT
s caePb3.Scfld02_0       3304180 12 +  4147112 ----TAGTaacattat
i caePb3.Scfld02_0      C 0 I 2493
s caeJap4.Scaffold17934   449394 13 +   591668 tatgtatgtatat---
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10383625 4005 + 21540570 I
e caeSp111.Scaffold567     27572 2355 -   141584 I
e caeRem4.Crem_Contig0   1899965 2677 -  4500979 I

a score=486.000000
s ce10.chrX              5044654 12 + 17718866 AATGACAACGTT
s caeJap4.Scaffold17934   449407 12 +   591668 aaatacaaagtt
i caeJap4.Scaffold17934 C 0 I 2965
e caePb3.Scfld02_0       3304192 2493 +  4147112 I
e cb4.chrX              10383625 4005 + 21540570 I
e caeSp111.Scaffold567     27572 2355 -   141584 I
e caeRem4.Crem_Contig0   1899965 2677 -  4500979 I

a score=0.000000
s ce10.chrX              5044666 15615 + 17718866  
e caePb3.Scfld02_0       3304192  2493 +  4147112 I
e caeJap4.Scaffold17934   449419  2965 +   591668 I
e cb4.chrX              10383625  4005 + 21540570 I
e caeSp111.Scaffold567     27572  2355 -   141584 I
e caeRem4.Crem_Contig0   1899965  2677 -  4500979 I

a score=589.000000
s ce10.chrX              5060281 64 + 17718866 TTTCTGCAAAAG--TGAATCAGAATCGCATACCATGTAAAAACTTCAAAGCTTCGACGCAACA-TCA
s caeSp111.Scaffold567     29927 60 -   141584 tttttgcaaatgaCTGAATT-------TATTTCGTGTacatatttcagaaatccagTTTAATAATAA
i caeSp111.Scaffold567  I 2355 C 0
e caePb3.Scfld02_0       3304192 2493 +  4147112 I
e caeJap4.Scaffold17934   449419 2965 +   591668 I
e cb4.chrX              10383625 4005 + 21540570 I
e caeRem4.Crem_Contig0   1899965 2677 -  4500979 I

a score=-1618.000000
s ce10.chrX              5060345 77 + 17718866 GAACCAGAGCAAT---AAAAATGTTC--TGCCAATTTGTTCTAGAACAAGCGATGTCTGCCACCACCGTATAATAGTTTTAT
s caeRem4.Crem_Contig0   1902642 62 -  4500979 GAACCAGAGCCAT----AAAACGTGACGTACAACTTCTAGAAAGAACTAGGGACG------------ATTAGATGGCT----
i caeRem4.Crem_Contig0  I 2677 C 0
s caeSp111.Scaffold567     29987 64 -   141584 TAACAAGAGCCACTATAACAATGTGA--TCCTGTTTTGTGATGATCATCGGAACA------------ATCTGAAGACT----
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3304192 2493 +  4147112 I
e caeJap4.Scaffold17934   449419 2965 +   591668 I
e cb4.chrX              10383625 4005 + 21540570 I

a score=45990.000000
s ce10.chrX              5060422 233 + 17718866 AGGAACTAGTACGA--TCAGC------GCTGTAATT-GTCTTATCT----AAA--AGGA-----GGAAATTTATGAATCAAGAGAT------TTCTCCTT-TTTCCGAGCTTGGATACAGCTGACGACGAAATGGAGTGACAGACACTTTTGATCGAATCAAGGA-CTAGGCGAACGAACCGGCGGCCGTTTTTCTTTTCTCCTCAATTTGACGACCCGCTTTCC--AATATGGCGCTGTC-----GTTTGCCATGATCGCTAAA--------GAG
s caeRem4.Crem_Contig0   1902704 250 -  4500979 GGGAACTAGTATGAATTCGATGTGTACGCTGGAATTAGTGTTATCT----AAT--AGTGGACACTGGTGTTTATGAATC------T-Tcctgttctcttt-tttccgagCCTAAA-ACAGCTGACGACGAATGTGAATGACAAACAGTTTTGATCGAATCAACGA--TTGGT----GAATCGGCGGGCGTTTTTCTCTCCA----GATTCAACGACCCCTTTTTCC-GAAATGGCGTTGTCTGCCGACTTGCTTTGATCGCTAAAACGATGAGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30051 238 -   141584 GAAAACTGGTATAAATTCAGTG-----GCTGTAATT-GTGTTATCTCATAAAG--GATG-----TGGTGTTTATGATTC------T------TCTCTCTTAGTTCCGAGCTTAAA-ACAGCTGACAGCTA----AACCAAATGACAG-TTTGATCGAATCAACAT--TTGGTGAACGAATCGGC-GGCGTTTTTCTCTCCT----GTTGTGACGACctcttttcccaaaaatgGCGCTGTCTACCGCTTTGCCATGATCgctgaattgaagaaaag
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3306685 249 +  4147112 AAGAACTGGTATGAATCATATGTATCTGCTGTAATT-GTCATATCT----AAGCTGGTG-----TGATGATCATGATCC------TCTCCtgttcctctt-ttttcgagCTTTAA-GCAGCTGGCGATTA----GAATGACAGACAGTTTTGATCGAATCAACACGATTGGCAAACGAAGCTGCGGGCGTTTTTCTCTCCA----GATTTGGCGACCCCTTTTTCC-GAAATAAGACTGTCTGCCGCTTTGCCATGATCGTCAAAACGATGAGAAA
i caePb3.Scfld02_0      I 2493 C 0
e caeJap4.Scaffold17934   449419 2965 +   591668 I
e cb4.chrX              10383625 4005 + 21540570 I

a score=32008.000000
s ce10.chrX              5060655 216 + 17718866 AATCCACGGATTGGCAA-----TGATGAATGCA-CCTACCTGTTGTTATCTCCCTTTTATCAATTCCCT-----GCCCTATCCACCGCCTTTCCTCTTTTTAACATCTTTCTTTTCTTTCATTC----ACATTCTTTCC--ATGTTTTG---ACATCGGTT--------TGCGCGAGGTGTT-----CGCCTTTGTAAGTTTCGCTCACC-GGACGATTCAAACAATTTAGGTGTACGTTTGCATGTC--CG
s caeRem4.Crem_Contig0   1902954 206 -  4500979 AATCCACGAATTGGCAA-----TGATTGATGCA-CCTACCTGTTGTTATCTTCCTATTATCAATAGCTT------AGCTTAATACCGCC------------CTCAATTCCTTATTCA--CATCC----CCTCAATTTG-----GTTTTGTCGTTCTCGTTT-------TCCTGTTAGGTGTT-CCCGTTCCCCACTAAGTTCCGCTCGCC-GGACAATTGGAAGAATGTAGGTGTACGTGTGTGTGTATG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30289 209 -   141584 aatccACGAATTAGAGA-----TGATTGATGCA-CCTACCTGTTGTTATCTTCATCTTATCAAATGTATGTGGAAGAGGTCTTACCGCC---------CTCCTCATTTCctcatttattcattc----acatttttca--------ttc----cctCGTTT-----CCCCCCGTCCGGTGTTCCCCATTCCCTA--AAGTTCCGCTCGCC-GGACAGTTGAAAGAATGTAGGTGTAGGTCTGTGGAAG----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3306934 220 +  4147112 AATCCAGGAATTGGCAA-----TGATTGATGCACCCTACCTGTTGTTATCTTAATCTTATCAAATGCTTTCGAGGGGCTATTCACCGCC---CTAATTCTCATCGTTTTCTTATCCTCTCATTCCTATCCATTTCTCA-----GTTTTG----CCTCGTTT-------TCTCGCTTGGTGTT-CCCGTTCCTTAGTAAGTTCCGCTTGAC-GGACATTTGAAAGAATGTAGGTGta--tctgtgtgtg----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   452384 210 +   591668 AATACACAGAGTGGTGGCACTTTGATTGAAGCA-CCTACCTGTTGTTATC----TCTTATCAAATTCCT------TGTTATTTCATTCCTGTCTTATTCGCGTTATTCGCCACTTCGTTTATCG----GTATTCATTGACGACGTTCCA---TTCTCGGCAGTGTGCGCCCTGCCTGGCCTGGCCTACGTC-----AAGTTTCCCTCTTCTGGACATTGGAAATGGAGTGTGT-------------------
i caeJap4.Scaffold17934 I 2965 C 0
e cb4.chrX              10383625 4005 + 21540570 I

a score=57856.000000
s ce10.chrX              5060871 293 + 17718866 AGCGTCCTTGATAGGTCAGCAGAT-GACCTCCGT---TGAGTAGACCAC---TACGAGATAGAAGTATCATGTTCTCT-----TCCTTTTACCTCTC---AATATATATTCAAA-----------------TTTTTTCT-------------------CTA-AA-----GTT-----------------------TTCATTTT--------------------GTTTTCTACTGA--------------------------------AAATATATAT--AATTTCAGA-----TCAAC--------TACACAAATGAGTATCTACGACCGAGTACCCCTTGATATTAGTGCACTTGTGAGTGGCTAG-TATCCTTG----ACAAT-----ATTGAGTT--CATTTT--------CAGGATAGGCTATTCGACATACGTGATAAGGCCCTTGATGTCAAAA
s cb4.chrX              10387630 344 + 21540570 AATGTCCTTGATAGTTCAGCATTCCGACCTCCGTGTGTGAGAAGACCACCAGCACGGGAATAAGATACGACGTTCTTCGCATTGTCTCTCG----------AGAACTACTTAAA-----------------TCTTTGTG-------------------AAATTA-----GATTACTCTTggtattcttttttattttagaatt--------------------tttttccattca--------gttttttcgtttttt-----ttccagaactttct--taTTACTGA-----TCACT--------TAT---TATGAGCATCTACGACCGAGTTCCACTTGACATCGCTGCTTTGGTTAGTATAA---TGTCCA------ATAAT-----CTCGAAACCGTTAGTTGCAAATTACAGGATAAACTCTTTGATATTCGCGATAAAGCCATCGATGTCAAAA
i cb4.chrX              I 4005 I 24
s caeRem4.Crem_Contig0   1903160 331 -  4500979 AGTGTCCTTGATAGTTCAGCAGGTCGACCTCCGC---TGAGTAGACCACC--CCCGAGATAGCAGTCTGATGTTCCTC-----TTCTCTCGAC-CAC----ACAAcaattcaaa-----------------tctttttg-------------------aag-aa-----gat--------gTGAACTTCCTGATTTTGGAAATGCC----------------CTTTTTccatata--------attt----atttttc-----attctgattcgttt--tgtttcagaaaagccCGAT--------TAC---AATGAGCATATACGACCGTGTTCCACTTGACATAGATGCCCTTGTGAGTTTGAAACTTTCCAT-----ATTAA-----CCTGATTCAGCTATTT--------TAGGACCGACTTTTTGATATCCGGGACAAAGCTCTAGATGTGAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30498 314 -   141584 AGTGTCCTTGATAGTTCAGCAGGTCGACCTCCGC---TGAGTAGACCAC---TACGAGATAGCAGTACGATGTTCCAC-----TTAT--CGCCTCAC----ACAACTATTCAAA-----------------TCTCCTTT-------------------CAG-AGAACGTGAT--------CTGTCGTTTTTa---ttaaatct--------------------tttttttgtaga--------gTCATAacca----------------acttttttgaattttcaga-----tt-----------cat---aaTGAGCATTTACGATCGTGTTCCATTGGACATCAATGCTCTGGtaagt-------ttttagaattaaatTCTCCTTCATTGATGT---TCTCA--------CAGGACCGGCTATTTGATATCAGAGATAAAGCGCTAgatgtgaaaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3307154 339 +  4147112 tgtgtccttGATAGTTCAGCAGGTCGACCTCCGC---TGAGTAGACCAC---CACGAGATGTCAGTTTGATGTTCCAC-----TTGTCCCGCCTCAC----------ATTCAAA-----------------TCttattt-------------------cag-aa-----gat--------ttctcattcttcattcttactTC--------------------TATCTTCGTTGACCATCTAGGTCAcagatatattt-----ttctttacttttct-atttttcagg-----ttgcttttcttcaaat---catgAGCATCTACGACCGTGTTCCACTTGACATCGATGCATTGGTAAGTTACATA-TTTCTACAGAAAATTAT-----ATTGATGT--CTGTTT--------CAGGATCGTTTGTTTGATATTCGTGATAAAGCTCTAGATGTCAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   452594 389 +   591668 ---GACCTTGATAGTTTAGCAGTCTGACCTGCGT--AAGAGTAGACTG----TGTGAGACTGTTGTATTATGTTCGAT-----TTGCCTCACAACAAACCAACACTGATTTCAACGACCGCCCCCATTCAGTCTGTCTGGTCATAAATGACCAATGACCAG-TA-----GTT--------TTTATGTTCTTGTTTGTAAACTTATTAGTATTTAATCTCaagtttattttattga--------ttacCTTCACAATTCCACAAATCTAGATGTTTTT--AGTGTAAAA-----CTACG--------GA----AATGAGCATTTACGACCGTGTTCCTTTAGATATTAATGCATTGGTAAGA-------TTTGCA------ATGCTTGTt-accaaaat--ttatttttaatttctagGATAGATTATTCGACATTCGAGATAAAGCTCTTGACGTGAAAA
i caeJap4.Scaffold17934 C 0 C 0

a score=3940.000000
s ce10.chrX              5061164 14 + 17718866 GAGAGCTCGTAAG------T
s caeRem4.Crem_Contig0   1903491 13 -  4500979 AAGATTTGGTATG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30812 14 -   141584 aagaattggtgag------t
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3307493 20 +  4147112 AGGAATTGGTAAGCTGATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   452983 14 +   591668 AAGAACTGGTAAG------T
i caeJap4.Scaffold17934 C 0 I 58
e cb4.chrX              10387974 24 + 21540570 I

a score=494.000000
s ce10.chrX              5061178 5 + 17718866 GTTTG
s caeSp111.Scaffold567     30826 5 -   141584 ttttg
i caeSp111.Scaffold567  C 0 I 61
s caePb3.Scfld02_0       3307513 5 +  4147112 TCCTg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   452997 58 +   591668 I
e cb4.chrX              10387974 24 + 21540570 I
e caeRem4.Crem_Contig0   1903504 0 -  4500979 C

a score=416.000000
s ce10.chrX              5061183 21 + 17718866 tttttaatttatataaaaatt-
s caeRem4.Crem_Contig0   1903504 20 -  4500979 TTattaa--aatgtcaaaaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3307518 18 +  4147112 -tcttca--tatttcaaaatt-
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold17934   452997 58 +   591668 I
e cb4.chrX              10387974 24 + 21540570 I
e caeSp111.Scaffold567     30831 61 -   141584 I

a score=191.000000
s ce10.chrX              5061204 2 + 17718866 CA
s caeRem4.Crem_Contig0   1903524 2 -  4500979 ca
i caeRem4.Crem_Contig0  C 0 I 23
e caePb3.Scfld02_0       3307536 33 +  4147112 I
e caeJap4.Scaffold17934   452997 58 +   591668 I
e cb4.chrX              10387974 24 + 21540570 I
e caeSp111.Scaffold567     30831 61 -   141584 I

a score=0.000000
s ce10.chrX              5061206 454 + 17718866 GCCAATCATCTTGTTAATCATAAAAATTTCCAAAAAATGTTTTAGTAGTTTAGCGTAATGCCGCATGTTTGAACCCCTTTTGCAAATTTTCGCAGTTTCTTAACCAACTTAAAGCATTTTTAGAAAAGACCTCATGCGCACTGAAAAATTACTGAGGGTACTAAAGTTGGTTAGAAAACTGCTAAAGTTGACAAAAAAATTGCGGAAAGATAGAGTTGATAAAGAAATTGCTAAAACAAGTAAAAAATTGCTTTTTAAAAATGCAGGACACTAAAGTTGGTTAAGAAAAAAAGATAAAGCTGGTTGGAAAGTAGCTAAAATTAGCTGAAAAGCTGCGGCGAATTGCAAAGCCTACAATGTTTGAATACAAGCAAACAAGGCAAATCTAGAAGATCAAAGCCGTAAAAAATTATTTTTGGTCCATTTTTCAATTTTTTAAATAACTTTTTTAAGT
e caePb3.Scfld02_0       3307536  33 +  4147112 I
e caeJap4.Scaffold17934   452997  58 +   591668 I
e cb4.chrX              10387974  24 + 21540570 I
e caeSp111.Scaffold567     30831  61 -   141584 I
e caeRem4.Crem_Contig0   1903526  23 -  4500979 I

a score=253.000000
s ce10.chrX              5061660 15 + 17718866 CCACATTTTTTTCAT
s cb4.chrX              10387998 15 + 21540570 CTATACACTAttctt
i cb4.chrX              I 24 C 0
e caePb3.Scfld02_0       3307536 33 +  4147112 I
e caeJap4.Scaffold17934   452997 58 +   591668 I
e caeSp111.Scaffold567     30831 61 -   141584 I
e caeRem4.Crem_Contig0   1903526 23 -  4500979 I

a score=-1824.000000
s ce10.chrX              5061675 8 + 17718866 TTTTCTTG-----
s cb4.chrX              10388013 8 + 21540570 -ttctgtat----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3307569 8 +  4147112 -----TTATCCGA
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold17934   452997 58 +   591668 I
e caeSp111.Scaffold567     30831 61 -   141584 I
e caeRem4.Crem_Contig0   1903526 23 -  4500979 I

a score=546.000000
s ce10.chrX              5061683 1 + 17718866 T
s cb4.chrX              10388021 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     30892 1 -   141584 T
i caeSp111.Scaffold567  I 61 C 0
s caePb3.Scfld02_0       3307577 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   452997 58 +   591668 I
e caeRem4.Crem_Contig0   1903526 23 -  4500979 I

a score=4013.000000
s ce10.chrX              5061684 18 + 17718866 TTTCAGACCGGATTTGTC
s cb4.chrX              10388022 18 + 21540570 tttcagttcagcTATAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1903549 18 -  4500979 tttcagaccgACTATACC
i caeRem4.Crem_Contig0  I 23 C 0
s caeSp111.Scaffold567     30893 18 -   141584 CTTCAGCTTGACTATGTG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3307578 18 +  4147112 TTTCAGCTGGATTTCCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   452997 58 +   591668 I

a score=133498.000000
s ce10.chrX              5061702 244 + 17718866 AGCGAAGATACCTCAAAAATGAATACTCGTCAAGAAGGTCTTAAATCGATTCAAACTGTGATGAAAATGGTGGATTATGTGTTCAACTATCGATTTTGTTATGTAGGATTTGAGGTAATTTGATGAGCGC-----------------CCTTT--TT--CCTCCTATGTGACTTTT------CAAGTT-TCATTTTTCAATCGTTTATCTTTTCAGGCGGATCTCGTCAAAATTCAAACATGCCTATCTGATGCCGAATACTATCTCAGTTTT
s cb4.chrX              10388040 219 + 21540570 AGCGACGATGCTTCCAAAATGAACACCCGGCAAGAAGGATTGAAAGCCGCGGAGACTGTGATGAAGATGGTCGACTACGTTTACAGCTATCGGCTTTGCTATGTGGGATTTGAGGT--------GAGCATA----------------CAGATTAGT--TTTTATTcgggaaaaa--------------ttgttttt-------------attaaGACTGACATTGTCAAGATTCAAGCTTGCTTATCGGATGCCGAGTACTATCTCAGTTTT
i cb4.chrX              C 0 I 5963
s caeRem4.Crem_Contig0   1903567 224 -  4500979 AGTGATGACGCCTCCAAAATGAATACAAGGAATGAAGGTCTAAAATCTATCTCGACTGTCATGAAAATGGTCGACTACGTGTTCAACTATCGGTTTTGTTATGTTGGATTTGAGGT--------GAGTGT-----------------CATAT--GA--CTTGAAACGTAAAATGA------CAagttcttccttct-------------tttcagaCAGATCTTGTCAAGATTCAAACCTGCTTATCTGATGCTGAATACTATCTCAGTTTT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold567     30911 233 -   141584 GGCGATGATCCGTCAAAGATAAATACCCGACAGGAAGGTCTGAAATCCATTCAAACTGTTATGAAAATGGTGGACTATGTTTTCAACTACCGGTTTTGTTATGTTGGATTTGAGGT--------TGGTTTCC---------------CACAT--GA--CGTGCTACGTGAATATT---CCCCCATTCctcatttctca---------tctttcaGGCCGATCTTGTTAAGATTCAAACCTGTCTATCTGATGCCGAATACTATCTCAGTTTC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3307596 254 +  4147112 AGCGATGATGCTTCCAAAATGAACACCCGAAGTGAAGGATTGAAATCTGTCCAAACAGTTATGAAAATGGTGGATTATGTCTTCAATTATCGGTTTTGCTACGTAGGATTTGAGGTA-------TGATTTTCCTGATCTGCAGCTTTCATGT--GATCCCTGCTACGTGAATTTCTAATCCAAAACTATCATTCCTCA---------TCTTTCAGACTGATCTTGTGAAGATTAAAACTTGCCTATCTGATGCCGAATATTATCTCAGTTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   453055 213 +   591668 AGTGGAGACCAATCAAAAATGAAGACTAGGCAAGAAGGCTTGAAATCCATTCAAACAGTGATGAAAATGGTGGACTATGTTTTTAACTACCGATATTGTTATGTAGGCTTTGAGGT--------ATGTA-------------------------GA--tttattaaattaatttt-------------tgaatatt-----------gttTGTAGACTGACCTCGTCAAGATCCGAACATGCCTATCGGATGCCGAATATTATCTGAGTTTC
i caeJap4.Scaffold17934 I 58 C 0

a score=-5756.000000
s ce10.chrX              5061946 112 + 17718866 ATCTACAGGTGACAG-------------AGCGAATAAAAACGAC------------------ATCACCATCTGACCTCAATTTC----GATTAAATGCCACTGTCTTTAAACCATGGTTTCCATT----GTCTGGATCAAT---TCGAAGCGAA
s caeRem4.Crem_Contig0   1903795 101 -  4500979 ACC-------------------------GGTGACGGAACAAAAC-----------------TTCCACCACATAACTTCAGTCTT---AAATTAACCG--AATGTCTTTACTaattaattttctttc---atctggattttt---ctgaattaaa
i caeRem4.Crem_Contig0  I 4 I 2009
s caeSp111.Scaffold567     31144 129 -   141584 ATCTATAGGTGAaggcgaagaaaaaaaggaagatg--aAACGAC-----------------CGACATCGACTGACCCCAATCTT---AAATTAACTT--AATGTCTTTACAAATTGGTTTTCTAAATGTGTCTG-ATCAATAGACAGCAACAAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3307850 119 +  4147112 Atc-----------gtgaagaagagagaggaggCGAAAAACGAG-----------------TGACACCTACTGACccccatttt--caaatttaatt--aatGTCTTTACGATTTGGTCTTTCTTCTGTGTCTGAATCAAT---CCGAAACAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   453268  97 +   591668 ATCTATCggtga----------------gaaacaaaaaaaagatatttttttctaattgtttGAC-CCTACTGACCTCATTTTCAACACATTATAT---ATTGTCTTTTGAACCGAA-------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10388259 5963 + 21540570 I

a score=-2099.000000
s ce10.chrX              5062058 10 + 17718866 --TCATTTCGAA
s caeSp111.Scaffold567     31273 10 -   141584 --ACTTTTCgga
i caeSp111.Scaffold567  C 0 I 2010
s caePb3.Scfld02_0       3307969  2 +  4147112 --CC--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   453365 10 +   591668 AACCTCCTCA--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10388259 5963 + 21540570 I
e caeRem4.Crem_Contig0   1903896 2009 -  4500979 I

a score=932.000000
s ce10.chrX              5062068 24 + 17718866 --AGTATAATGTGTATTTTCTAAATT
s caePb3.Scfld02_0       3307971 23 +  4147112 ---GTAcggagaattttttctttatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   453375 26 +   591668 TGCCTCAAATGTGTCTTTTCTCAACT
i caeJap4.Scaffold17934 C 0 I 3911
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     31283 2010 -   141584 I
e caeRem4.Crem_Contig0   1903896 2009 -  4500979 I

a score=433.000000
s ce10.chrX              5062092 6 + 17718866 TTATGT
s caePb3.Scfld02_0       3307994 6 +  4147112 tcatgT
i caePb3.Scfld02_0      C 0 I 4383
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     31283 2010 -   141584 I
e caeRem4.Crem_Contig0   1903896 2009 -  4500979 I

a score=0.000000
s ce10.chrX              5062098 1729 + 17718866  
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     31283 2010 -   141584 I
e caeRem4.Crem_Contig0   1903896 2009 -  4500979 I

a score=2070.000000
s ce10.chrX              5063827 110 + 17718866 TGATTCCAAATTAACTTTTGCTTTTGATCTTTCATTTTCCCCACCGTGTTAATTGATAACATATTTTTATCATTG-AAACAGACCCTGGCCCGTCGTATCGGGAA-ACATCA
s caeRem4.Crem_Contig0   1905905 106 -  4500979 TGATTTCAGACC------TGTCATCGTTCTCTCAATTCTCTGTCTAAGTTAATTGATAACAGTGTGTTATCATCGCAAGGAAACATTGCCTCGACGTTTTTGAAAGACTCCA
i caeRem4.Crem_Contig0  I 2009 C 0
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     31283 2010 -   141584 I

a score=24783.000000
s ce10.chrX              5063937 239 + 17718866 GTGAATCGATAATGAAAAACGTCTCTCATTTCGTAAGCCTCACTAACCGATTGGCCCGGGCAA---------TTTTGTTGGCCGCGGCCCAGGGACGTTTCGAAGACAGAGACGACTCATGCTCACC----GCTGCTCTGCTCTCTTTTCGTTCTTCTTG----ACATAGGGACGCGCTC---AGAAACGTACGGAGCGGAGCGGAGCGAGTAGAGAGTTCCACAGCGCACATTCACACTCA---CAACCATCTGCGCTCAC
s caeRem4.Crem_Contig0   1906011 235 -  4500979 GTGAATCGATAGT-AAAAATGTCTCTTCATACGACAGCCACACTAACCGTTTGGCCCCGGcaagacaatttttttttgtcgtGGCGGCCCTGTGACGCTCCGACGAGAGGGCGG---CCTGCTCACC----GCTGCTCTTCAC-----TCGTTCTCCTCGGGGGGCAAACGGACACACTCTAACAAAACGGACGGACGGCCGCCGAGTTCGT--------------CGCTCATTCACACTCACCACAACCATCTGCGCTCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     33293 224 -   141584 GCGAATCGATAGC-AAAAACGTCTCCTCATTCACCAGCCACACTAACCATTTGGCCCGGCCAA---------TTTCCGTCTTGGCGGCCCAAGGACGCCTCG--GAGTGAGAGG---CATGCTCACCGATGGCTGCTCTCCA---------TTCTCCATAGGGCAAAGGGGGGCATTCGCTCACAAAACGGACGGACGGCCGCCGAGTCGGT--------------CGCTCATTCGCACTCGCCCCAACCATCTGcgctcac
i caeSp111.Scaffold567  I 2010 I 732
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I

a score=-5730.000000
s ce10.chrX              5064176 531 + 17718866  
s caeRem4.Crem_Contig0   1906246 910 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     33517 732 -   141584 I

a score=7772.000000
s ce10.chrX              5064707 113 + 17718866 ------TTTTCAGACCGGAGGATCAAAGCTGTTTGATGACGCCGTGACTGTGCAAATTAACATGAAAGAGGTT----TGTGTTCTTGAGAAAAAAACGCTTTTTCGTG---------AAACCCACTAACTAA
s caeRem4.Crem_Contig0   1907156 108 -  4500979 ttgttgattTCAGTCTGGGGGTTCGAAGCTCTTCCAAGACGCGGTCACAGTGCAAATCAACATGAAGGAGGCTACGGTAAGCttcttttgagaaattgttcttttctt------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34249 126 -   141584 ------TTTTCAGTCTGGAGGATTCAAGCTTTATGACGATGCTGTCACCATTCATTTCAGTATGAAAGAGGCTACGGTAAGCCCGTGAGCAAAAAagcatctttttttcctcccGCAAAACCTAGCCATTAA
i caeSp111.Scaffold567  I 732 I 368
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I

a score=400.000000
s ce10.chrX              5064820  97 + 17718866 ATTTCAAATAGCATTTCCCTTTTCCGGCTGTTCAGCAGCTGCCAGATAGCAAAAAGC-------CGACTAAGAAAAATGGCTCATTTT-CGTGCTGGAAGAATGG
s caeRem4.Crem_Contig0   1907264 101 -  4500979 -ttttccgaggCACTTCCATTAAGCCA-TCTTCAACGGCt--caaacaaaataatttattctctCTCCTTGAAAAAACGgcccatttttcttcctcgTAAAACGG
i caeRem4.Crem_Contig0  C 0 I 161
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     34375 368 -   141584 I

a score=0.000000
s ce10.chrX              5064917 254 + 17718866 AAAGAATATAGTTTTGGAGGTGGGGTAGAATCAGTCGAAATTGCCTCAGAAATCCAAATTTATCAATTAGATTTGATTAGAAACATTTCAAAATTTTAAATGACTGTTTAATATGTTCAGAAAAATTTAGAAACTTCGCCGCAACATTTAACCAAATTAAGCCAACTTTTAATTGTTTTCAGTGCTCATTTGTTGGTCATCCAATAGGTTAATCCCAACTTTACCCTAAATTTGCAAATATCTAGCTCAAGTCT
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     34375 368 -   141584 I
e caeRem4.Crem_Contig0   1907365 161 -  4500979 I

a score=-628.000000
s ce10.chrX              5065171 159 + 17718866 AGCATTTTTTGCAATTGACA-TTTCTAGAAT-----TGAAAAATATTTTCAAATAATGAAACTATTTTTCGTTTTCATGACCTATTATTTGCAAACAATTCTCAATTTCAGAACAAAAATATTGAAAAAGTCAGCAACTTCCGACGGTTTAACTCTAACCAGGCT
s caeRem4.Crem_Contig0   1907526 125 -  4500979 CgcattttttgttctcttcaGTTTCTCAAGTGGCTTTAAGAAAACTTTGGCGTTAAAGAAAACGTGTTTTGTTT----------------------------------CAGCCTGATGCTGATGATAAAGTGAACAA------GAAGTACACTGCCAACAAGCAC
i caeRem4.Crem_Contig0  I 161 C 0
e caePb3.Scfld02_0       3308000 4383 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10388259 5963 + 21540570 I
e caeSp111.Scaffold567     34375 368 -   141584 I

a score=-3277.000000
s ce10.chrX              5065330 24 + 17718866 CGTGTTGAAAAAGACAGAAACCAA-----------
s cb4.chrX              10394222 33 + 21540570 CGTATCGAGAAAAGCAAAACCCAACGATTAACG--
i cb4.chrX              I 5963 C 0
s caeRem4.Crem_Contig0   1907651 24 -  4500979 CGCTTTGAAGCCAGCA---------GACATACG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3312383 24 +  4147112 CGCGTTGAGTCT-GCA----------AGAGGCGTC
i caePb3.Scfld02_0      I 4383 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e caeSp111.Scaffold567     34375 368 -   141584 I

a score=6800.000000
s ce10.chrX              5065354  90 + 17718866 -------GCTTCGATGATTTTTGA----------------TACTGACGACATTGACTCAGGAAATGGATCGAAA-----------AATTCAAAA--------ATGGAAGTGAAAATTACAATTAATATGGTA
s cb4.chrX              10394255 108 + 21540570 GCTCGTCGTTTCGACACCAACCGGGGTACTGCTCGTCTTTTTCTTGAAGCAAGGGATGTTGAGAACTCCCAAGG----------------AAAA--------ATGGAAGTGAAGATCACCATCAACATGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1907675  90 -  4500979 G--CGTCGATGC----------------------------TTCTGGAAGCAGAGGATAT----GAGTGCAAAGGAAGGAGATCCGGCCTCAAAG--------ATGGAGGTCAAAATCACCATCAACATGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34743  90 -   141584 -------GCTTCGATG-------G----------------TTTTG-GAACCCGAAGTCAAGACATCTGCTGATG-----------GGACTGAAGACCACAAAATGGAAGTGAAAATCACCATCAACATGGTA
i caeSp111.Scaffold567  I 368 I 36
s caePb3.Scfld02_0       3312407  90 +  4147112 -------GTTACAATGACTGCTAG----------------TTCTGAGAACTACGGGTCTGAGGAGCCACCATCG-----------AGCCCGAAG--------ATGGAAGTGAAAATCACTATCAATATGGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I

a score=274.000000
s ce10.chrX              5065444 2 + 17718866 CA
s cb4.chrX              10394363 2 + 21540570 CG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1907765 2 -  4500979 CG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3312497 2 +  4147112 Ta
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e caeSp111.Scaffold567     34833 36 -   141584 I

a score=-2682.000000
s ce10.chrX              5065446 40 + 17718866 AATTTTCAGGAATTCATATA-------TACATAATAATTTTTAATTC
s cb4.chrX              10394365 30 + 21540570 G--------TAATTACTATTGTTCCtctaaaaatta---------tc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1907767 32 -  4500979 AGCATCCACTGACCACTGTTG------GATATacta---------tc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3312499 33 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e caeSp111.Scaffold567     34833 36 -   141584 I

a score=273.000000
s ce10.chrX              5065486 1 + 17718866 A
s caeRem4.Crem_Contig0   1907799 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3312532 1 +  4147112 A
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394395 0 + 21540570 C
e caeSp111.Scaffold567     34833 36 -   141584 I

a score=64565.000000
s ce10.chrX              5065487 229 + 17718866 TTTTCCAGAAACAAATTGAAAAGCATCATCGGGAAATCGATTCTTACATTTCGCCGTTTTCTCCATCACCGGATTCAATTTTTCTGCGCATTCCATTGTTGCCACAAGACTATGCGCGCATTGAAGAAGCAAGAGCCTCGCTTGACCAACTTGTTCGCAAATGTGTAAGTGattttttgaaattaagatatataaaaaat---------ataataaaattaa----tttCAGCACCAAATGA
s cb4.chrX              10394395 222 + 21540570 atttacAGAAACAACTCGAGAAACATCATCGTGAGATTGATTCCTACATCTCATCATTCAATCCACACCCGGAATCGAGATTCCTCCGTATTCCACCAATGCCCATTGACTACGCTCGGGTCGAACTCGTTCGTGATATACTTGACAACCTATGTCGCAATCTTGTAAG------TTTGCAGATGG-ACTACGACCAGAG---------AAAGTAATCTTAT----TTTTAGCAACGTATGA
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   1907800 223 -  4500979 aatttcagaagcaACTGGAGAAACATCACCGTGAAATTGAGTCGTACATTTCTCCATTTACCCCATCTCCAAACTCAATCTTCCTTCGTATCCCACCTAGACCAGAAGATTACGCCCGCATCGAGCTCGCACGGGATGAAGTCGAAAAACTCGTTCGCGAAGTTGTAAG------TTTGTCGTTAA-ATAACAAACAAAC---------ACACAAAACGTAT---ATTCCAGCACCTTCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34869 222 -   141584 tttttcagaagcaaCTTGAGAAACATCATCGTGATATTGAATCCTACATCTCTCCATTCACTCCATCGCCGGATTCAATCTTCCTTCGTATTCCACCAAGACCGCAAGATTTCGCTCTCGTTGAGAATGCTCGAGATGAGCTCGACAAGCTTGTCGCTATCGTggtaat------tt------taa-attattatCTAAT----TAGCAACACAAAACTCAA---ATTGCAGTATGATATGA
i caeSp111.Scaffold567  I 36 C 0
s caePb3.Scfld02_0       3312533 224 +  4147112 CGTTCTAGAAGCAACTCGAGAAGCATCATCGTGATATTGAGAGTTACATCTCTCCGTTCACTCCATCGCCGGACTCAATCTTCCTTCGTATTCCACCACGTCCGGAAGATTATGCTCACATCGAAAATATTCGTGATGAGGTTGACAATCTTGTTAACCTTGTGGTAAT------------------ACTTCTACCGCATGTTGTAACAAAACATAATTGTATTCTTTTCAGCATCAATTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I

a score=3116.000000
s ce10.chrX              5065716 19 + 17718866 CTCCAAAAATCATCCCACC
s caeRem4.Crem_Contig0   1908023 19 -  4500979 CCCCTCACATCATTACTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     35091 19 -   141584 CTCCTCATGTCATCCCGGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3312757 19 +  4147112 CTCCGGACACTATTCCTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394617 19 + 21540570 I

a score=68361.000000
s ce10.chrX              5065735 147 + 17718866 CAACGACGCGAAAAATTTCCTTCAAAACCTTCGACGGATCGATGTGCGTTGCAGTGCGTTGTACCCAAGGCCACCGGCACCTGGAGACAAGGAGAAAAAGAGCTACCGAATGTGTCCATGCTTTGAGCCGGAAATTGAGGACATTGA
s cb4.chrX              10394636 147 + 21540570 CGACGATCTTAGGATGTGGTTGGAGAGACTTCGTAAACTTGACGTTCGCCTCACCGCCCTCTATCCAAGAACCCCAGCGCCAGGAGACCCAAACAAAAAGAGCTTCCGTATGTGCCCCTGCTTTGAACCTGAAATGAATGACATTGA
i cb4.chrX              I 19 I 1860
s caeRem4.Crem_Contig0   1908042 147 -  4500979 AGAGGAGTCTAGAGAATATCTCCAAATTCTTCGTAAGCTCGATGTCCGTCTCAGCGCTTTGTATCCAAGACCACCAGCACCGGGAgacaaagagaagaaaagctATCGCATGTGCCCATGCTACGAACCTGAGATGGAGGACATTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     35110 147 -   141584 AAAAGAGTCGAGAGACTTCTTGAAGAAACTCCGAAAACTTGATGTTCGTCTCACCGCTTTGTATCCCCGTCAACCTGCCCCAGGAGataaggaaaagaagagttaCCGCATGTGCCCTTGCTTCGAACCGGAAATGGCTGACATCCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3312776 147 +  4147112 GGACGAGGCCAGAGAATTCCTCCAGAAGCTTCGCATGCTTGACGTTCGTCTTACTGCTTTGTACCCGAGACAACCAGCCCCTGGAGACAAGAACAAGAAAAGCTACCGTATGTGCCCTTGCTTCGAACCTGAAGTGGAGGATATCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I

a score=4807.000000
s ce10.chrX              5065882 52 + 17718866 ACGTCTCGTTGTTCACTATGACGGTGTTTTCCAAGCCATCAAGTATTTCCAC
s caeRem4.Crem_Contig0   1908189 52 -  4500979 AGATCTGGTTGTTTTCTACGAGCAAGTTTTCCGTGGCCATCGATTTATGCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     35257 52 -   141584 CCGGCAGATCAACCACTTcaatgaagtttttcataGCATGAACTACCTCTAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3312923 52 +  4147112 GAAACTGGTAATCCACTACAACCAAGTCTTCAATGGAATGAGCTACATCTAC
i caePb3.Scfld02_0      C 0 I 1495
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I

a score=-1739.000000
s ce10.chrX              5065934 44 + 17718866 ----AATCTTGACCTCTTCA--------TGGAGCACCAACGAGCTGAG-AAGAGAAA
s caeRem4.Crem_Contig0   1908241 45 -  4500979 ----CGCTGTAACCTCTACA--------TGGCGGAAAAACAAGCCGCTGAAGAGCAA
i caeRem4.Crem_Contig0  C 0 I 800
s caeSp111.Scaffold567     35309 46 -   141584 GGCGTGGAACAATACCTACAACACCAACTGGAACGGAGACaa-------aaaa----
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3312975 1495 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I

a score=37.000000
s ce10.chrX              5065978 4 + 17718866 TCTT
s caeSp111.Scaffold567     35355 4 -   141584 aCCT
i caeSp111.Scaffold567  C 0 I 626
e caePb3.Scfld02_0       3312975 1495 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I
e caeRem4.Crem_Contig0   1908286 800 -  4500979 I

a score=0.000000
s ce10.chrX              5065982 1505 + 17718866  
e caePb3.Scfld02_0       3312975 1495 +  4147112 I
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I
e caeSp111.Scaffold567     35359  626 -   141584 I
e caeRem4.Crem_Contig0   1908286  800 -  4500979 I

a score=140.000000
s ce10.chrX              5067487 11 + 17718866 AGATAAGC-TTT
s caePb3.Scfld02_0       3314470 12 +  4147112 aaatgagcatgt
i caePb3.Scfld02_0      I 1495 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I
e caeSp111.Scaffold567     35359 626 -   141584 I
e caeRem4.Crem_Contig0   1908286 800 -  4500979 I

a score=11240.000000
s ce10.chrX              5067498 69 + 17718866 TTCCGGAACACATAACCATTGAGTCGCGCTCACTTCAAACCTCAACATGGAACTTGCCCCAAGCCCTAA
s caeRem4.Crem_Contig0   1909086 66 -  4500979 TTCCGAAGCACATTACAATTGGGTAGCTCACAGTGAATGCTCAACTTCGGAACTCG--TCTAACC-CAA
i caeRem4.Crem_Contig0  I 800 C 0
s caeSp111.Scaffold567     35985 58 -   141584 TTCCGAAACACATTACAACAGAGTAGCTCACTCC---------AATTCGGAACTCG--TCAAACTCCAA
i caeSp111.Scaffold567  I 626 C 0
s caePb3.Scfld02_0       3314482 66 +  4147112 TTCCGTACCACATGACCAGTTGGTATCTCCTTCCAAAAGCCTAAATTCGGAACTCG--TCAAACT-CAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I
e cb4.chrX              10394783 1860 + 21540570 I

a score=12467.000000
s ce10.chrX              5067567 18 + 17718866 CTCGAACTTTTCTTCTTT
s cb4.chrX              10396643 18 + 21540570 CTCGAACTCCTTTCTCTT
i cb4.chrX              I 1860 C 0
s caeRem4.Crem_Contig0   1909152 18 -  4500979 CTTGAACTCCTCTTCTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     36043 18 -   141584 CTCGAACTCCTCTTCCTT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3314548 18 +  4147112 CTCGAACTCCTCTTCCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   453401 3911 +   591668 I

a score=52090.000000
s ce10.chrX              5067585 162 + 17718866 T--CGCTTCACTTGTCCGAGTGTGAGCGCAATTTTAACATCCGGATGGCCG-A----ACTCCATTTCAAAAGCGGGTGTCT-ATCTATATTTGACACCCTCCATGCCTCAC---CTTTCTCACTTCCAAAA-----------TCTTTTG-----GCAGGT--TGTCAGTGTGAATGACCATCAGTATGGAA
s cb4.chrX              10396661 157 + 21540570 TGCCGCTTCAGTAG-CCAC---------CATATTCAACATCCGGATGGGCAGA----ACTCTATTTCAAAAGC-GTGCCCA-CT-----TCTGACACCTTA-------------CTTACTGGTTCTCCAAAAAGAATTTTCTCTCTTTGTGGTGTGGAAGGCTGTCAAAAAGAATATTCATCAGGGTGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1909170 147 -  4500979 T--CGCTTCACTTG-CCGC--------GCATATTCAACATCCGGATGGGCA-A----ACTCTATTTCAAAAGCGGTTGGCA-AT-----TTTGACACCCTGA------CAC---CTTACTGGTTTTCAAAA-----------TCCTTTGTGTTGGCGAAG--TGTCAAAATGCATAACCATCAGTGTGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     36061 155 -   141584 T--CGCTCCGCTAG-CGGTACCCGTGCGCATATTCAACATCCGGATGGGAG-A----ACTCTATTTCAAAAGTGGTTGCCAGAT-----TCTGACACTTCA-------CAC---CTTACTCACTTTCGAAA-----------TCCTTTGTTGCGGAGACG--TGTCAAAATGAATAACCATCAGTGTGgaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3314566 153 +  4147112 T--CGCTCGACTAG-CTGTACTAGTGCGCATATTCAACATCCGGATTGCCG-A----ACTCTATTTTAAAAGAGGTTGCCAAAT-----TCTGACACCTTA-------CTCTCTCTTACACctttccaaaa-----------tcttttg-tGTGG----T--TGTCAAAATGAATAACCATCAGTGTGGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   457312 151 +   591668 T--CATTCCACTTGACTGGTTCTAACCGCGT-TTCTCTTCTCGGATGGTCA-AGTTCACTCCATTTCAAAGGC----GTCA-TA-----GTTGACACTTGG-------------CCCGCTTTTTTCAGTGG-----------TTACCTTTTCTTTTCAGT--TGCCAATGTGAGTAATCATCAGTGAGGAA
i caeJap4.Scaffold17934 I 3911 I 905

a score=-15500.000000
s ce10.chrX              5067747 81 + 17718866 GTAGTTGAAATTTTGAAAAAACA-------TTAACTATATTGTT-GAGTTTCTTAT----------C----------TATATTCTTGTGATTTTTGTTATACTT-------TTATA
s cb4.chrX              10396818 83 + 21540570 G-------AATACGGAAATAActtcctttttcaatt-tttttttggaataactTAT--ACCTTAAGA----------AAAAGagt------ttttgtagaattt-------ttcga
i cb4.chrX              C 0 I 41
s caeRem4.Crem_Contig0   1909317 90 -  4500979 G-------CATACGGAAAtag---------tcaact-tttttct-gaataacttattcactttcaaagttttttttcgaaattgtc-cGCGTTTAGCTGAGTTT-------TTCGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     36216 44 -   141584 g-----gaaatttgaa------------------------taca-gaaacactt------------c----------aaaaa----------------atacttttt----ttcga
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3314719 89 +  4147112 G-----TGAATTCGGAAATgc---------ccaact-tttttct-gaataacttattctttttcgac----------aaaaatcta-ttttttagGTTAGACTTCTTAGAATTCGA
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17934   457463 905 +   591668 I

a score=-9146.000000
s ce10.chrX              5067828 43 + 17718866 ----------------------------------------------GTTACTAAGTGACA-TTGAAATGA---AGTGGTTGCTATTAATTTT------G
s caeRem4.Crem_Contig0   1909408 38 -  4500979 ----------------------------------------------------AGACAACATCAGAAATTG---AGTGTCTGTCATCAATTTA-----A-
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold567     36260 56 -   141584 ataacttA------------------------------------CCCACTTTAGAAA-----GAAACTCGTGCTGTAGATGCCATTTATTTTCCGTG--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3314818 88 +  4147112 ATAGTTTATTAGACCAATAATTCTTTCTATTCATATTTCCTtttccaaatctgaaaaatg-cgaaaattg---aGTGCCTATCATTAATTCT-------
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10396901 41 + 21540570 I

a score=47486.000000
s ce10.chrX              5067871 148 + 17718866 AAGAAAAGAGACTTT-------TACAT---GCACAAAATAAATATCCCCCACCAAAACACTTCATCTTG-TCATGCAA------GCCAATTT-GAACAACAATTACCTTCATATTAAACGTTTATGTTGCATATTTCTTT---CTTTTTTGATAATAGC-TTTAT-----GTATA
s cb4.chrX              10396942 139 + 21540570 AGCAAAAGAGATCC--------CACAT---GCT-------------------CAAAACACTTCATCTTG-TGCCACTGCCAAGAGCCAATTTGGGGCAGCGATTACCTCCGTATTAAGCATTTATGTTGCCATTTCCCTTTCCTTCCTCTTATAATATCGTTTac-----ctcta
i cb4.chrX              I 41 C 0
s caeRem4.Crem_Contig0   1909446 151 -  4500979 AACAGAAAGGGACCTCCTGCTACACAA---GCTC-AGATACATAT--TCCACCAAAACACTTCATCTTG-TCATGCAG------GCCAATTT-ATACAGCGATTACCTTCATATTAAGCATTTATGTTGCCTTTTCCCG----CTTTTCTTGTAATATT-TCCAT-----CTATA
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold567     36316 144 -   141584 AACA-AGCAGATTT--------TCTAT---TCTC-GAATGAATAT--TCCATCAAAACACTTCATCTTGCCCATGCAA------GCCAATTT-GGACAACGATTACCTTCATATTAAGCATTTATGTTGCCTTTTTCCTT---CCGTTTGAGCAATATC-TCTAT-----CTTGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3314906 145 +  4147112 -------CGGGACC--------TATATACCTCCC-GAATAAATAT--TCCACCAAAACACTTCATCATG-CTGTGCCA------GCCAATTT-GGGCAACGATTACCTTCGTATTAAGCATTTATGTTGCCTTTTTCCTT---CCGTTTATGTAATATC-TCTATCTATACTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I

a score=-4018.000000
s ce10.chrX              5068019 29 + 17718866 ----TACGTATTTATGAATCAAGGTTTTAACTA--------
s cb4.chrX              10397081 29 + 21540570 --tttttctttttg----------ttcaaaaaatactattc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     36460 27 -   141584 CCCTTCCCTTTTCA----------TATTATTTGTAGT----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3315051 26 +  4147112 cccttttc-tttca----------ttttagcTTTACT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I
e caeRem4.Crem_Contig0   1909597 30 -  4500979 I

a score=40277.000000
s ce10.chrX              5068048 83 + 17718866 ATTTCGAAATT---TTAGAATGCCTTCTTTTCTCCGATTCAATCAGTTCTACTCAACGAAAACGGATACAGAAAATGGTGAGTTTA
s cb4.chrX              10397110 80 + 21540570 ------atttttcaacagaATGCCTTCTATTTTGCGATTCAACCAGTTCTACTtaacaaaaatcaatgaagAGAATGGTAAGCTCA
i cb4.chrX              C 0 I 561
s caeRem4.Crem_Contig0   1909627 83 -  4500979 GTTTCTATTTT---ACAGAATGCCTTCAATTTTACGTTTCAACCAGTTCTACTCAACAAAAACAGATGCAGAAAATGGTGGGTGAA
i caeRem4.Crem_Contig0  I 30 I 10
s caeSp111.Scaffold567     36487 80 -   141584 -ATTGAATATT---ACAGAATGCCTTCTTTACTACGATTCAATCAGTTTTACTCAACCAAAACAAATGCAGAAAACGGTAGGTT--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3315077 76 +  4147112 -----TATATT---ACAGAATGCCGTCTTTTTTGCAATTCAACCAGTTCTACTCAACAAAAACAGATGGAAAAGATGGTGGGtt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I

a score=-2776.000000
s ce10.chrX              5068131 42 + 17718866 TTTTTTAATTAAATACATATGTAGTAGAATAATTACTGT--------------TGA
s caeRem4.Crem_Contig0   1909720 33 -  4500979 ------TGTTATAATTGTATATCAGTCATCAAATGT-----------------TGA
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     36567 34 -   141584 --------GCAAATATATTTCTACTTGATGAAGTAtagt--------------tga
i caeSp111.Scaffold567  C 0 I 197
s caePb3.Scfld02_0       3315153 48 +  4147112 --------atagaaacatttttgtgtAATGAAATTTATTAGTACTTTTCAGTATGA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I

a score=-6534.000000
s ce10.chrX              5068173 125 + 17718866 -TGAAAACATGTTATGTTGTGCTCGAACAAAGAGTACTTTTTTTCTAAACCACAAAAGGAACAAGAATAGAAGATGAGATAAGAAAGCATCTG---------AAGCTTCTTTGAGTAATTACA---CTTATTTGTTCA----------------------
s caeRem4.Crem_Contig0   1909753 105 -  4500979 TTATAAATATgtt------tgttc------------ctttttttc--------------caaaaaatta-aacatgAGA---------ATCTTGAAAATGCTGACCCTATTCAAATAATCGCA---AAGGTCTGCTAG------CAAGTAAACGGA----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3315202  90 +  4147112 --TGagatgaact------ttttc----------------ttctc--------------aacaagatta---------------------ctt-----------ttttgttcgaaGAATAACAGATAAGATTTGCTAGAGTAATTACGTAAATGTGTTCA
i caePb3.Scfld02_0      I 1 I 74
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I
e caeSp111.Scaffold567     36601 197 -   141584 I

a score=1161.000000
s ce10.chrX              5068298 30 + 17718866 CGTCAGAGCAT---------TAAGATTTTCAACAAGATA
s caeRem4.Crem_Contig0   1909858 39 -  4500979 CGTCATTGGATGTTAGATTCTAAGATTTTTAACACGATA
i caeRem4.Crem_Contig0  C 0 I 122
e caePb3.Scfld02_0       3315292 74 +  4147112 I
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I
e caeSp111.Scaffold567     36601 197 -   141584 I

a score=0.000000
s ce10.chrX              5068328 1213 + 17718866  
e caePb3.Scfld02_0       3315292   74 +  4147112 I
e caeJap4.Scaffold17934   457463  905 +   591668 I
e cb4.chrX              10397190  561 + 21540570 I
e caeSp111.Scaffold567     36601  197 -   141584 I
e caeRem4.Crem_Contig0   1909897  122 -  4500979 I

a score=589.000000
s ce10.chrX              5069541 51 + 17718866 TCTATTACAATGTTTTTTTTTCATTTTACAGTTTCTAGTTTGCAAATCACA
s caePb3.Scfld02_0       3315366 43 +  4147112 tctttttaaaatttttttttacttttt----tttctatttttgaact----
i caePb3.Scfld02_0      I 74 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I
e caeSp111.Scaffold567     36601 197 -   141584 I
e caeRem4.Crem_Contig0   1909897 122 -  4500979 I

a score=-1643.000000
s ce10.chrX              5069592 32 + 17718866 TTTGATGTTCAAATTAATGTTACAAATGTTTA---------------
s caeRem4.Crem_Contig0   1910019 31 -  4500979 TCTAACATTTAAAGT-ATTCAACATCCGTTCC---------------
i caeRem4.Crem_Contig0  I 122 C 0
s caePb3.Scfld02_0       3315409 30 +  4147112 -----------------tttgacaTCTGTTCAAAGGGGTATCAAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I
e caeSp111.Scaffold567     36601 197 -   141584 I

a score=9878.000000
s ce10.chrX              5069624 217 + 17718866 ------AAA--ACTAATCCAATCTTTTGGAT-TTTTTCCA-AAAGTTCAACCTACGC-ATGTGACAAGCACA-----TTGTTCAACTTA---ACGCCTACTCAGTTGTGTAGTACTAAAA-ATTGCAAAAAAT---CAGTAATCCGATCAAAATCGG---TTCATTTTCAAAAATAGTCTC---TCACACGTCTATTTAAAGTTTTGCGTTC-TGTATGTTGGGCCTTTCTAATAACCAACCGTTCA-----------------------
s caeRem4.Crem_Contig0   1910050 213 -  4500979 AAAATAAATCAACTAGT--AAtcttttggttctttttttg-aaagttcatcCTACGCAACGTGAGGACTTCA-----TATTCGTACCTA---CCGCCTACgtaaaaat---tggcaaaaacagcaaaaagaAT----AGTAAGCCGATCAAAACCCGTTGTTCATTTCCAAAAGTGGTG-----CCTACCATTCATTCACAGATTTGTGTTT-TGCGA--------TACCTAATGAC--ACCGTTCA-----------------------
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold567     36798 227 -   141584 ------AAC--ACCAAT--AATCTTTTAGTTCATGTTTTA-AAAGTTCAACCCACACAACACAAAAAccgtat----tttttctattaatatCCGCCTACATATATTTACAGTACAAAAATAGGTAACAGGATAGTTGGTAATCCGA--------------------TCAAAAATGGTCTA---CCACCCACTCATTCGCAGTTTATGTTTTCTCCGTTAT---TCTATCTGATgat--tcgtttctcttttcattctttaaAACGGTTA
i caeSp111.Scaffold567  I 197 C 0
s caePb3.Scfld02_0       3315439 227 +  4147112 ------AA------ATT--AATCTTTCGGTTCCTCTTTTGTAAAGTTCAATCTACAAAACATGGAAACcgcctttcatttttttacctACATCCACCTACGTAATTTTGTGTTATAAATA-AAGTcgcaaaat-tcaaataatccgATCAAACCTCG---------TTCAAAAACGGTCTACTTCCACCTACTCATTCACAGTTTTATGTTTCTGTGAGAT---CCTATCTAATGAT--GCCTTTTTCCGTTT-------------GTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I
e cb4.chrX              10397190 561 + 21540570 I

a score=3772.000000
s ce10.chrX              5069841 5 + 17718866 TCCAT
s cb4.chrX              10397751 5 + 21540570 tccac
i cb4.chrX              I 561 C 0
s caeRem4.Crem_Contig0   1910278 5 -  4500979 TCTAC
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold567     37025 5 -   141584 TCCAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3315666 5 +  4147112 TCCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   457463 905 +   591668 I

a score=99377.000000
s ce10.chrX              5069846 231 + 17718866 AACGTTCATTACGAAAAAC---GGATTCTCTC------------ATGCATTCC--GCCGTCCA----------CG---------CCTTGTACATAGTA--AAACT----ACGCCACAT------------GAGGGGGTACAGTTGACCTGCCAGATCGATATCC----TCCAAGGCCATTTCGTCAATTCGCCATTTGCT------------GTTTCGCG-----TGGT-GG-TGTTT-----TGTCCTCA--TTGTTGCTT------------------CGTATTCAAATTT--CTTTGCTGCGCGGAA--AATCTTTCA------TACAATCCCGTTCTCA
s cb4.chrX              10397756 301 + 21540570 caccaccatt-cgaaaaac---ccattttctcttttctctcatcACGCATTCCAAATCG--CA----------CA---------CCTTATACATAATAGTAAACC----ACCACCGCCACCATCCGTATGAAGGGGGTACAGTTGACCTGTCAGATCGATATCCCTTTTCCAAGGCCGTTTCGTCAATTCGCCATTTTCTTGTCTACTTTCCGTTTTCGCCTCCCTG---GG-TGTTTTGTCATGTCCTCATTTTGTTGCTTTGCTGAAGACGACGGCTTcgtattcaaattt--ttcc----cgCGATTTTAATCAATTC---GCAGTTGATCCCGTTCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1910283 235 -  4500979 GACGTTCATTGCGAAAAACG--GTATTTCCTCTT----------ATGCATTCC--GTCGT-CG----------CA---------CCTTATACATAGTA--AAACC----ACGGC----------------ATAGGGGTACAGTTGACCTGTCAGATCGATATCC----TCCAAGGCCATTTCGTCAATTCACCATCCGCT------------GTTTCTTCTCCTCTGGTCGG-TGTTT-----TGTCCTCA--TTGTTGCTT--------------GCatcgtattcaaattt--tctt-gtGCGCA-----AATCGATTC------CGTGATCCCGTTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37030 211 -   141584 GACGTTCATTCCGAAAAAC---GCATCCGCT-------------ATACATTCC--GTCA-------------------------CCTTCTACATAGT---AAACC----TCGCCC---------------ATAGGGGTACAGTTGACCTGTCAGATCGATATCC----TCCAAGGCCGTTTcgtcattt--------tct------------atttcatt-----tgGACGGCTGTTT-----TGTCCTCA--TTGTTGCTT------------------cgtattcaaattt--tcttcttacGCA-----GATCGATTC------CATGATCCCGTTCTCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3315671 240 +  4147112 Cacgttcattccgaaaaac---GCATTCTCTC------------ATACATTCC--GTCGT-CG----------cacctttttcttcttctacataGT---AAACCAGCAGCCACC---------------ATAGGGGTACAGTTGACCTGTCAGATCGATATCC----TCCAAGGCCGTTTCgtcaatt--------tct------------atttcatCTG---TGGGTGGCTGTTT-----TGTCCTCA--TTGTTGCTt------------------cgtattcaaattttctctccTTGCGCA-----AATCGattcgatgatgatgatcccGTTCTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   458368 218 +   591668 AACGTTCGGA-CGGAAAATGTAGAATTCTC--------------ATTGTCGCC--GTCGC-CGTCTTCTTCACCA---------TTCCGTACATAGT---AAACTGG--GCGGCGG--------------TGAGGGGTACAGTTGACCTGTCAGATCAATATCC----TTCAAGGCCACTTCGTCAATTCACCATTTTC-------------GCTTC--------TG---CG-TGTTT-----TGTCCTCA-----TTGctt------------------tgtatttaaattt--ctatCC--CGCC-----GATC-------------TAATCCCGTTCTCA
i caeJap4.Scaffold17934 I 905 I 463

a score=-60507.000000
s ce10.chrX              5070077 873 + 17718866  
s cb4.chrX              10398057 611 + 21540570  
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   1910518 599 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37241 615 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3315911 550 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   458586 463 +   591668 I

a score=-4768.000000
s ce10.chrX              5070950 22 + 17718866 -----------------------AAGAAGAATCAAAATGTCTAGC
s caeRem4.Crem_Contig0   1911117 21 -  4500979 CCGCACATTTC--------CTAAGAGATG----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37856 13 -   141584 --------ttc--------agaaagaaag----------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3316461 21 +  4147112 --------tttttcttctattaaaagaag----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   458586 463 +   591668 I
e cb4.chrX              10398668 27 + 21540570 I

a score=2509.000000
s ce10.chrX              5070972 9 + 17718866 AAATGAACA-
s caeRem4.Crem_Contig0   1911138 6 -  4500979 ---TGAACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37869 9 -   141584 aaatgaaca-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3316482 9 +  4147112 gaatgaaca-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   459049 9 +   591668 -aaagaaaag
i caeJap4.Scaffold17934 I 463 C 0
e cb4.chrX              10398668 27 + 21540570 I

a score=159546.000000
s ce10.chrX              5070981 505 + 17718866  
s cb4.chrX              10398695 480 + 21540570  
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1911144 494 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37878 488 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3316491 478 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   459058 491 +   591668  
i caeJap4.Scaffold17934 C 0 I 331

a score=-3299.000000
s ce10.chrX              5071486 34 + 17718866 GCTTCATTTGAATCTTTTTTACGCTC-------------------------TCTTTTGT--
s cb4.chrX              10399175 35 + 21540570 GCCTTA-TTGGGGtttttccgtttat-------------------------tttattttat
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   1911638 51 -  4500979 GCTCTG-ATGAGTTTATCTCATTCTTTA------GCAGTCGTTTCCC---ATTTATTTTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38366 58 -   141584 ACTCtg-atgagtttttttcttcccccATCCTAggaaatcttttcttttcgtttagTGT--
i caeSp111.Scaffold567  C 0 I 7
s caePb3.Scfld02_0       3316969 51 +  4147112 GCTcaa-atgagcttttttcatTCGTC-------TGAATCTTTCTCCGTGCTTTATTGT--
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17934   459549 331 +   591668 I

a score=3610.000000
s ce10.chrX              5071520 38 + 17718866 ----GGAAAAGGGGTC---CTCTACTACTCTACTACTTTTCTAAC
s caeRem4.Crem_Contig0   1911689 35 -  4500979 CTAAAAAGAAGGGAAGGGACTCTACTATT------TTTTCC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38431 30 -   141584 ----aaagaaggggat---ctctattatt------ttttcctg--
i caeSp111.Scaffold567  I 7 C 0
s caePb3.Scfld02_0       3317026 30 +  4147112 ----AAGAAGAGGAAT---CTCTATTATT------CTTTCTTG--
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold17934   459549 331 +   591668 I
e cb4.chrX              10399210 24 + 21540570 I

a score=9053.000000
s ce10.chrX              5071558 58 + 17718866 TAACTAGTAAGCTTGATTGAAATGGATTGGAATTTTGTCGAAGTTGTTGAAGGTAGAT-----------------------
s cb4.chrX              10399234 55 + 21540570 TAACTATCA---TCAGTTGAAATGGATTGGCATGTTATTGAAATTATTGAAGGTATAT-----------------------
i cb4.chrX              I 24 I 1129
s caeRem4.Crem_Contig0   1911724 45 -  4500979 --GCTTT--------ATTAGAATGGATTGGCATCTTATGGAAGCTGTTGCAGGTa--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38461 63 -   141584 ------------ttGATTAGAATGGAATGGAATCGTGCCGAGAGAGTGGAAggta---g---agaaaaagaaacattttgt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317056 66 +  4147112 ------------TTGATTAGAATGGATTGGAATCTTGTCGAAATTGTGGAAggta---gaacaaaaaaaaagacattggGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   459549 331 +   591668 I

a score=-30410.000000
s ce10.chrX              5071616 154 + 17718866 TGCACTTGGAAAACAA---------------------------------------------------------------------------------TTGGAGAATAGGGCACACGTTTTTTTCACTTT-----CCATTATATCTGGTTTCGAAATGAGAAAACCCGa-------------------------------------------ttt--------------------------------aaacaataaaaaatttt---atta--ttttcaatttttaCTAGAATACAGTGAGATCTAAATAATTTT--------GTTTTT
s caeRem4.Crem_Contig0   1911769  70 -  4500979 ----------------------------------------------ct-------------------------------------------------ttagaaaaa----caaaacattgtGTTACcta----------------------------------------------------------------------------------ct-------------------------------gaaaaaaacg-----ttcC---ATGA--TTTCCGGAAATATT------------------------------------AGTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38524 323 -   141584 tgCATTCAGCTGACCAGTTCCTCAAATTTACGGACTCTTGCATTCCCTTTTTTATGGCAATAACAATTctaagaaaagaaagtatATACATATTTTCTTAGGAACT----TATATCATAATCTTATTTCCAGACTTGTAAAATTTcgggccggcccgccaaggcccgggctcgggccgggccgggccgggccgggccgggcttgggcaaaattcttaaggcccggcttggcccggagggcccggaagaaaaatgacctcttttcaagccaatttttcgacctttttttggctaaaaatagttcaaaatgactttttctcta-acgATA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317122 144 +  4147112 AGCACCCGGAAAActag-------------------------tttccttttttg-------------------------------------------ttagaaact----tttat--ttatcctacttt-------------ttttg----------------------------------------------------------------ttc------------------------------aagaaggatgaaaactttt---attatcttttcggaaaactttggATTCCCAAAAGTACTGAACGACATATTGACTATgtcgtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   459549 331 +   591668 I
e cb4.chrX              10399289 1129 + 21540570 I

a score=4191.000000
s ce10.chrX              5071770 11 + 17718866 TTTCAATGTTT
s caeRem4.Crem_Contig0   1911839 11 -  4500979 TTTCAAGTGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38847 11 -   141584 TTCCAAACTTT
i caeSp111.Scaffold567  C 0 I 211
s caePb3.Scfld02_0       3317266 11 +  4147112 tttgaaacttt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   459880 11 +   591668 ttttaattttt
i caeJap4.Scaffold17934 I 331 C 0
e cb4.chrX              10399289 1129 + 21540570 I

a score=-7255.000000
s ce10.chrX              5071781 51 + 17718866 ATTTTCATTAA----------------------------CCTGTTTTTTCGCCATATGCGCCCCTTGCTGAACATTGGC-
s caeRem4.Crem_Contig0   1911850 25 -  4500979 ---------------------------------------ACTATTGC--------ATGTTCTTCT-------TATAtgc-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3317278 70 +  4147112 tttttcatttaattttttgaaggatatAACCGGTTAGGCATTATTTTT--GACTGAAGCTTGTCT-------CATTGGC-
i caePb3.Scfld02_0      I 1 I 92
s caeJap4.Scaffold17934   459891 43 +   591668 agttttattgG----------------------------ACTGTTATT--TATGTACACAAATCA-------AGTTTGCA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10399289 1129 + 21540570 I
e caeSp111.Scaffold567     38858 211 -   141584 I

a score=-761.000000
s ce10.chrX              5071832 34 + 17718866 AGTGTA--CATCTCGGC-----TCTTTTTGATTTTTAAAAA
s caeRem4.Crem_Contig0   1911875 30 -  4500979 attgaa--aatttca---------ttttttatttagaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   459934 35 +   591668 AGTGTACTCACTTTGCCGTATTCTCTTTTGATTTG------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3317348 92 +  4147112 I
e cb4.chrX              10399289 1129 + 21540570 I
e caeSp111.Scaffold567     38858 211 -   141584 I

a score=-313.000000
s ce10.chrX              5071866 51 + 17718866 AAAACCAACTACTAACAAACATGTGAAA--AATATATATCTTTGAACCGAGAT
s caeJap4.Scaffold17934   459969 33 +   591668 --------------------GTTTGAAATgaatacataatttttttttcagtt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3317348 92 +  4147112 I
e cb4.chrX              10399289 1129 + 21540570 I
e caeSp111.Scaffold567     38858 211 -   141584 I
e caeRem4.Crem_Contig0   1911905  0 -  4500979 C

a score=-7.000000
s ce10.chrX              5071917 16 + 17718866 ATAAGATGTCAAAGTG
s caePb3.Scfld02_0       3317440 16 +  4147112 aCAAGCTGCTTGGGTT
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold17934   460002 15 +   591668 -aaaattttcaaaaca
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10399289 1129 + 21540570 I
e caeSp111.Scaffold567     38858 211 -   141584 I
e caeRem4.Crem_Contig0   1911905  0 -  4500979 C

a score=-13252.000000
s ce10.chrX              5071933 38 + 17718866 AAGCAATA-AAAGTGCA---------------------------------------AGTCTAATTAAAACATGCAAT--------------------A
s caeSp111.Scaffold567     39069 55 -   141584 ------------ATGCA-------------------------------TTATGAGTACTTTTATTAATACATATAGTGATGATGTCCTTTTGAATTAA
i caeSp111.Scaffold567  I 211 C 0
s caePb3.Scfld02_0       3317456 94 +  4147112 AAACAAT---ATTTGCAAATTTTATTTAACAATAGTTATTTCCAAAACTCATCAGATATGTCATTAATAT-TTTCTTGGTACCTTCcttttgattgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   460017 71 +   591668 atggGATAGGGATTGCT--TATTCTTctcctccccccccccctccatCTCCTtccaattttcattcaaaggtg-------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10399289 1129 + 21540570 I
e caeRem4.Crem_Contig0   1911905  0 -  4500979 C

a score=46.000000
s ce10.chrX              5071971 4 + 17718866 TCTC
s caeRem4.Crem_Contig0   1911905 4 -  4500979 tttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39124 3 -   141584 -ATC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317550 3 +  4147112 -ttt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   460088 2 +   591668 --tc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10399289 1129 + 21540570 I

a score=169113.000000
s ce10.chrX              5071975 189 + 17718866 AAAATCGAA---------TATGTTTCAGACGCAACCACAATGTCAGAACGTAAAACTACCAGTGCTCAAACAATCGTCATCATATCATCTTTAATATTGCTCATTGTCGCGTTAGGACTTCAAGCCGGCGGTGTAATGTCACCAAGTTGGCAGGTGGTGGACATTCGGGAGTTTCGAGCAACTCACCATGTGAGTTCT
s cb4.chrX              10400418 188 + 21540570 aaaat-tac---------tgttttccAGACGCCACCACAATGTCGGAGCGGAAAACCACAAGTGCTCAAACCATCGTTATCATATCTTCCCTGATATTGCTCATCGTCGCATTGGGTCTTCAAGCCGGTGGTGTCATGTCACCAAGTTGGCAAGTTGTGGATATCAGAGAATTTAGAGCCACCCATCATGTGAGTTTT
i cb4.chrX              I 1129 C 0
s caeRem4.Crem_Contig0   1911909 178 -  4500979 --aa------------------tttcagacactACAACAATGTCGGAGCGGAAAACAACAAGCGCTCAAACGATCGTTATCATATCATCGTTAATATTGCTCATTGTTGCATTGGGTCTTCAAGCCGGAGGAGTAATGTCGCCAAGTTGGCAAGTCGTGGATATTCGGGAATTTCGATCAACACATCATGTGAGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39127 187 -   141584 --aatatga---------ttttttccagacaCTGCAACAATGTCGGAGCGCAGAACCACCAGTGCTCAAACGATTGTCATCATATCATCACTAATATTGCTCATTGTTGCATTGGGTCTTCAAGCCGGTGGAGTTATGTCACCAAGTTGGCAAGTCGTTGATATACGAGAATTCAGAGCTACACACCATGTGAGTTTG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317554 186 +  4147112 aaaatattg---------tatttttcagac---GCAACAATGTCGGAGCGTAAGACCACCAGTGCTCAAACCATCGTCATCATATCATCCTTAATATTGCTCATCGTTGCTTTGGGTCTTCAAGCCGGTGGAGTAATGTCACCAAGTTGGCAAGTTGTTGACATCCGAGAATTCAGATCCACCCATCATGTGAGTTTG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   460090 192 +   591668 aaaatttgatttattttctttttttcaga------agaaaTGTCGGAGCGGAGAACCACAAGCGCTCAAACCATCGTAATTATATCTTCACTAATTTTGCTCATTATTGCTCTGGGACTTCAAGCTGGAGGAGTAATGTCCCCAAGTTGGCAAGTCGTCGATATTCGGGAATTTCGAGCTACACATCATGTAAGTttt
i caeJap4.Scaffold17934 C 0 C 0

a score=-9328.000000
s ce10.chrX              5072164 35 + 17718866 -T-TTGTGTTTTGAAACA----------------TGGAAATCACCTGCTGAAG
s cb4.chrX              10400606 32 + 21540570 ATGTTTTGTTAGTGACT-----------------GAAACTTCACCTGCG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1912087 52 -  4500979 -CATTGTGTTCTTGACCTTAGTTTCTAATAAACAAACATTTCACCTGttgaaa
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold567     39314 18 -   141584 -TGTTTTAAtgttgaa--------------------------aat--------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317740 28 +  4147112 -TGTTTTAATCCAGAATT----------------CACCTGTCacc--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460282  0 +   591668 C

a score=-7446.000000
s ce10.chrX              5072199 58 + 17718866 TTGTGATGATTTTAGAGCCAAGGTTTTT--TGTGCTTTAACTTCCTGAGTGATCACACAT
s cb4.chrX              10400638 16 + 21540570 ------------CAAAGCCCTTTCTGTT--------------------------------
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold567     39332 28 -   141584 --ctgaaaggaGAACAGCTGAAaccgtttt------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317768 26 +  4147112 --ttgttgaaaaaataactaaaaaggTT--------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460282  0 +   591668 C
e caeRem4.Crem_Contig0   1912139 31 -  4500979 I

a score=-13359.000000
s ce10.chrX              5072257 49 + 17718866 ----------------TAATCGGAATGTAAAGTTC------ATGCGAAAAATGATGTAAACAGTTTTCAAG
s cb4.chrX              10400658 43 + 21540570 ----------------TGGCAGAA---TATGATTcccaaaatcagaaatcgtGTTAAAAACA---------
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   1912170 37 -  4500979 ----------------TCATCGga---cttttttc------ttcgaaaacgTTGTGAGAACA---------
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold567     39360 47 -   141584 tcaaaaagttcaaatttgatag---------catt------ttgaattttcatctGGAAGCA---------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317794 41 +  4147112 ---AAAAG---AAAGTTCATTG---------TTTC------TTTGAActctattgaaaaaca---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460282  0 +   591668 C

a score=156203.000000
s ce10.chrX              5072306 243 + 17718866 Ctatataaaaaaaattataa-----aaa-----ttaaaGC---------AAATATCC-------TGAATTTCAGCACGGCTTATGGCTTGACTGCACAAGACCTCAACTTCACTTGGT---AAAATCTCAAAACAAAGACGATCTCCCACTACATTGCACATATAAATTTGACATATCTGCAACGCAAATCATTGATGAAAATATTGAGGACATTGATCAGAATAGTGCAGCTGGAGAAAGCGAGCACCATCAATTTTTCGGTAAG-GGTTTA
s cb4.chrX              10400701 230 + 21540570 -----TCTTGAAGATTATAA-----AAA-----CAGTGTA---------TAAT---------------TTTCAGCACGGCCTATGGTTAGATTGTACACGACCACAGCTTCATTTGGT---GAAAACACAGAACAAGGACGACCTTCCATTGCACTGTACATATAAATTTGACATATCCGCCACCCAGATTATTGACGAAAACATCGAGGACATTGATCAAAACAGCGCTGCCGGTGAAAGCGAGCATCATCAGTTCTTTGGTATG-ACCTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1912207 233 -  4500979 ------ATAGAACAAAACAC-----AAGTCTCCCAGTACT---------TAATAATA-------AATACTTCAGCATGGACTTTGGCTGGATTGTGTCCGACCACAACTTCAcctgtt---gaaaaatcaagacAAAGATGACCTTCCTTTGCACTGCACATACAAATTTGACATGTCTGCCACAGAGATTATTGACGAAAACATCGAGGACATTGACCAAAACAGCGCTGCCGGAGAAAGCGAGCATCACCAGTTTTTCGGT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39407 232 -   141584 ----------GAAAAGATAATCAGGAAC-----CAAAACG---------TGAC-------------ATTTTCAGCATGGCCTCTGGTTAGATTGCACCCGGCCACAACTTCACctgtt---gaaaaatcaaaacagaGATGATCTTCCCCTTCATTGTACTTACAAGTTCGACTTCTCTGCTAGCCAGATCATCGACGAAAACATTGAAGACATTGATCAAAATAGTGCTGCTGGAGAGAGTGAGCACCATCAGTTTTtcggtgag-ttttta
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3317835 237 +  4147112 ----------aagcacAAAA-----AAC-----CATAATGAATAGTTGATAAT-------------TATTCCAGCACGGACTATGGTTGGATTGTACTCGACCGCAACTTCATTTGAT---GCGGAATCAAAACAAAGATGATCTCCCGTTGCACTGTACTTACAAGTTCGATATATCAGCAAGCCAGATTATTGACGAAAACATTGAAGATATTGATGAAAACAGTGCTGCCGGGGAGAGCGAGCATCATCAATTCTTTGGTGAGAGTTCTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   460282 247 +   591668 ------ctatgaaaaaaaaa-----aaa-----tttaata---------caaAAATCGTTGCTTTAAATTTCAGCACGGTCTTTGGCTCGACTGCACACGACCGCAGCTCCATCTGATtgcaaaaactcaaaataaaGATGACCTTCCGTTGCATTGCACTTACAAGTTTGACGTGTCGGCTAGTCAGATTATTGACGAAAACATTGAGGACATTGACCAAAACAGTGCAGCTGGTGAAAGTGAGCACCATCAATTCTTTGGTAAG-ATTTGT
i caeJap4.Scaffold17934 C 0 C 0

a score=546.000000
s ce10.chrX              5072549 1 + 17718866 T
s cb4.chrX              10400931 1 + 21540570 T
i cb4.chrX              C 0 I 67
s caePb3.Scfld02_0       3318072 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   460529 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     39639 0 -   141584 C
e caeRem4.Crem_Contig0   1912440 0 -  4500979 C

a score=-3289.000000
s ce10.chrX              5072550 28 + 17718866 ATACTTGGAAAAAAATTGA--CTTTCAAAA
s caeRem4.Crem_Contig0   1912440  4 -  4500979 --------------------------AACA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3318073 20 +  4147112 --------ACAAATGTTCA--ATAGAAATa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   460530 22 +   591668 --------ATATTAATtgaatctttaaaaa
i caeJap4.Scaffold17934 C 0 I 7
e cb4.chrX              10400932 67 + 21540570 I
e caeSp111.Scaffold567     39639  0 -   141584 C

a score=-22958.000000
s ce10.chrX              5072578 472 + 17718866 TTATTTTTTAAAAAGCAAACCGCGTAGAAAATTATTGTGGAATAAAACCTTTTGAGAAATATCTAAAAAAACACTCAGTAATTATTGAATTTACAAAAAACTTTCAAATAATTTGAAAAGATGAACCTCTGAATAGGAAACATATTGTGAAATTTTCAGTCATTTACAATCAATTTGTTTTTTTTTTTTCGAACTTGATGAATTTGAAGAGATGAAATAGCGTGAGTAGAGTTTTTTTGAAAGTAGACCCAAAAAAAAAGAGACTGGCTGAATATTTGAACAAAACACGCTAATATTTTAAAGTGTTTATTAAATTTAGGTCAAAGATTTGGAAAATTGCCAAAAATTCAAATAATTCTGATTTTTTGTAAACATAGAAAAGATTTTTTTTAACTCGTAGCAAGCTGTAAAGTTGAAGAATTAAGCATTTTTTCTATTAGCATACTATATTTTTAAAGATAAATA-TAAAATC
s caeRem4.Crem_Contig0   1912444 170 -  4500979 CGGCTTCTT------------------AAAAATA----------------------------TTAATGAAAC-------------TGATTTTA---------------------GTGAAGAGCGAAAGCtcaacaaa--------------------aattgtcaaaactGATGTTCTTG--------------------------AGAAgatgaa-----------------------------------------------------------------------------------------tttat-----ttatttc-----------------caaaaaagtt--------------------------gaaaaacatcTCTAGTAAT-------------GAAAATC----------------------ACGGTCTAGTATATTCATGGTGCTAG----TAAAAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3318093 243 +  4147112 tagttttatcaaa--------------aaaaata-----------------tctggcAATATTTAATGATCCCT----------TTGAAATCA---------------------GTATACAACCACGTATTCATAGAG-------CGTGG---TTTTAGTTGCATAAAGTAAACCTAGTAC-------------------------AGGAGATCAAC----------------------------------------------------------------------------------------TTTATCGG--CTATATCACA-------------GCAAATTAGTTA------TCTGTAGTTGCATAAACCGAAAAAGCAATCTCAGAAAC-------------TAAATTC-----------TAGTTTGACATAAGAAATAATTTATAGATGATTTCAAATGCCAAAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460552   7 +   591668 I
e cb4.chrX              10400932  67 + 21540570 I
e caeSp111.Scaffold567     39639   0 -   141584 C

a score=-6552.000000
s ce10.chrX              5073050 51 + 17718866 TTACAAGACAACAAATAAAAACTCAATTTTAAAGTATATGTTTACAACAAA---
s caeRem4.Crem_Contig0   1912614 21 -  4500979 --------------TGAGAAGACAGAA---------TATACATA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39639 45 -   141584 ttataataAAACCATCACAAACTTGTT---------TATgtttactgaaaaatg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3318336 28 +  4147112 -----------CTGTCAAAGAATTTTTAC-------TATATTTCC--------G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460552  7 +   591668 I
e cb4.chrX              10400932 67 + 21540570 I

a score=-4325.000000
s ce10.chrX              5073101 22 + 17718866 TTTCCTTATTTTTTAAT-----GTATG
s cb4.chrX              10400999 21 + 21540570 TCTCATCA-TTTTGAac-----taatg
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   1912635 18 -  4500979 ---------TTTTAAACGTAAACCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39684 12 -   141584 ----------tcTGAAT-----TATTt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3318364 11 +  4147112 ----------TTTG-GT-----TAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460552  7 +   591668 I

a score=195243.000000
s ce10.chrX              5073123 285 + 17718866 ---CCAACT---TTT-----------------CAGGTTGGCACAAATTCACCTTAGGATTTATGCTCTGCGCCATTGTCCTGGCCGCATTATCTCTCTTGTGCGGAATTTGTGCTCCTTGCAGTTCTGGGTTTGCCGTGTTGTATGCTATACTAGTGGCTTTTACAGGT-------AATATAAT-TAAACCTTTA----------------AAA-AACCCATAGATACTTTT-----------------------TTTAAGCTTTCACAGCCACGTGTGGTGACGCTATTTTTTTCTTCGCGGCTCATAGAGTCGATAGTCGATTTGTGCAAGGACTTGTTGGAACTTATGAGGTA
s cb4.chrX              10401020 280 + 21540570 ---ttt--t---ttt-----------------caggatggCACAAATTCACATTGGGATTCATGCTCTGCGCCATCATTCTTGCAGCGCTATCCCTACTCTGTGGAATTTGTGCCCCATGCAGCTCTGGATTCGCGGTTTTGTACGCTATTTTGGTGGCGTTCACaggt-------attt-----gaaaattgta---------------agaa-atttcgaaaataattaA-----------------------CTTCAGCTTTCACTTCTACGTGTGGAGAtgccattttcttttttgctgctCATCGTGTCGACAGCAGATTTGTGCAAGGACTGGTTGGAACATATGAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1912653 285 -  4500979 ---ATA--T---TTT-----------------CAGGATGGCACAAATTCACACTCGGGTTTATGCTCTGCGCAATCATCTTGGCAGCATTTTCTTTGTTATGCGGTATCTGTGCACCGTGTAGCTCTGGATTTGCGGTTCTATATGCTATTCTTGTTGCATTCACAGGT-------ATTTTAGTCGAAAAgtgga--------------caaaa-aatttgagtatgGAT-C-----------------------TTTCAGCGTTTACTGCCACTTGCGGAGATgcaatcttcttcttcgctgCTCATCGTGTAGACAGTCGTTTTGTGCAAGGACTTGTGGGAACGTATGAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39696 302 -   141584 ---atc--tgaattcaaaaatcgaatctCTTACAGGATGGCACAAATTCACATTGGGATTCATGCTGTGTGCAATCATTTTGGCTGCATTATCTCTTCTTTGTGGTATTTGTGCCCCTTGCAGCTCCGGCTTTGCAGTTTTATACGCAATCTTAGTTGCGTTCACAGGT-------ATTT-----TGAAGcttga------------ctcaaaa-aaattaagcttTGGG-A-----------------------TTTCAGCTTTCACAGCCACATGTGGAGATgctatctttttcttcgctgCTCACAGAGTTGACAGTCGATTTGTTCAAGGTCTTGTTGGAACTTATGAGGTA
i caeSp111.Scaffold567  C 0 I 48
s caePb3.Scfld02_0       3318375 328 +  4147112 ---TTA--TTAATTC-----------------CAGGATGGCACAAATTTACATTGGGATTCATGCTATGCGCTATTATTCTCGCTGCTTTGTCTCTTCTCTGCGGAATTTGTGCTCCATGCAGTTCCGGATTCGCCGTTTTGTATGCGATCCTGGTTGCTTTCACAGGTTTGTGTCTTTT-----CTATGTCTGATGACATATCCTTCTCGGAGTTAATCATACGTCGGG-AGTATAATCCGgaaatatttatattttcagcattCACAGCCACATGCGGAGAcgccatcttcttcttcgctgCTCATCGAGTTGACAGCCGATTTGTACAAGGTCTTGTTGGAACCTACGAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   460559 296 +   591668 CCAATT--T---TTC-----------------CAGGATGGCACAAATTCACTCTAGGATTCATGCTCTGCGCTATTGTCCTCGCGTCGTTGTCTCTTCTGTGCGGAATTTGTGCTCCGTGCAGTTCCGGGTTCGCTGTTTTGTATGCGATTCTGGTGGCATTTACAGGT-------ACTT-----Ttagtctgtc------tgtctgtgcgACT-GATCAATGAATAACC-AATGTT------------------CTTCAGCTTTTACTGCCACGTGTGGAGACGCCATTTTCTTCTTTGCTGCTCATCGGGTTGACAGCCGGTTTGTGCAGGGACTTGTTGGAACATATGAGGTA
i caeJap4.Scaffold17934 I 7 I 1415

a score=-19165.000000
s ce10.chrX              5073408  99 + 17718866 ----------------CAGTCTGATTTTCTTTTTGATTCATAA--AACAAATTATGCGAAATGTGATTCGATCAAA----------AAATT---------------AGTCAATGGGCAC------CCTGTAGTAAATTTGGTCAAAAG
s cb4.chrX              10401300 122 + 21540570 AGGGAAAAGTGTGTATCAA--------ACCTGGAAAACTACAATGACCGTA------AACACCC----TTATACAACGACGCGCTAAAATTGca------ctttgaaatcaattaaCTC--ATGTTCTGTAATAGTTATGAAGAAAAT
i cb4.chrX              C 0 I 158
s caeRem4.Crem_Contig0   1912938 111 -  4500979 AGG--ATTCCATATATCAA--------------GAAATCATAA--ACTGGA------AAAAACTG---TGATAAAGC---------AAATTCTATTGTTTCCTCACTACCAATTTACACCGACAGCCTG-Gattgaaattcataaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3318703  64 +  4147112 -------AGATCATGTCAA--------------TAAATGctca--aatgaa------gaaa--------gaaaaaa----------aaactgtg------------ggAGAATCGgcaaagat-------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998  48 -   141584 I

a score=-9217.000000
s ce10.chrX              5073507 149 + 17718866 TGAAATTTTTCTGACATTGTATCTAGTAATTTCACGTTGAAACCTTGCGCCAGAG--------------CGGTCGCTTTGTGAA-----CACTACAAGTCCACAAGCTCGCGCCGT----TTTTCAAT-----------TTTTAATTT------------TAAAAATGAC---------CGGACACTGGAAATTATACTCTAAA
s caeRem4.Crem_Contig0   1913049 128 -  4500979 -------------tcacgGATTCTGGAAA--ACATATTGAGCAGTAGGAAGAAGG--------------ATCTGCATTTATAAGTA---CACTGCA----CATATGAACACACTATCGACTTTTCAAT-----------GTTTATGTTTCTATTGGTTTCCAAAAACAAC---------CGGGT--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3318767 148 +  4147112 ---------------------tttggaaa------tttgaaagtttggaaTGGGAACACAATTCTaactatttgaatttttaactgTCTCGTTGC---------TGaaggcttttt----ttttcactgcaaACAATCAGtctattttcgaatttttatctcaaaataACACTCAGCATAGGGCA---------------TAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e cb4.chrX              10401422 158 + 21540570 I
e caeSp111.Scaffold567     39998  48 -   141584 I

a score=-64.000000
s ce10.chrX              5073656 17 + 17718866 AAACTTAGAAAATTGCT
s cb4.chrX              10401580 17 + 21540570 aaatatcacaaattctg
i cb4.chrX              I 158 C 0
s caeRem4.Crem_Contig0   1913177  4 -  4500979 -------------TCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3318915 17 +  4147112 AAACATAGAGCTTTGTT
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998 48 -   141584 I

a score=-1182.000000
s ce10.chrX              5073673 17 + 17718866 CCAGAGATTCA------ATAACT
s cb4.chrX              10401597 21 + 21540570 taagagatatg--aaaaatctgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1913181 23 -  4500979 AGAGATCTATGTTATGGATGTGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3318932 40 +  4147112 I
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998 48 -   141584 I

a score=-23704.000000
s ce10.chrX              5073690 134 + 17718866 CACCAA-------TTCTATGGAGT--------------GGTTAAAAATAATCTA--------------CATTTCGAAAAAAACAAAATGTTCTGGATACAATGTTCCTTCTATTTGTATGGCCTCTCTATTAGTTTTGCGATTTCAAA---------------------------AGTATTTGAAAATTATTTTTT
s cb4.chrX              10401618 152 + 21540570 caaccgctaaaatgttaatgaaaatatgacaaaagttttattattgatatctttc----------acaggaatcgaaagGTAGCAGCTC---------------AACATGTAAGTATAGAGACGCTCTA-----TTAGAGGATTCACAGCATTA-----------GTAATGT---AAAACTTTTTCgttatgtttt
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1913204  79 -  4500979 CACCCG-------ATTCATGtaag---------------attctgaatatattt--------------gGTCtcg--------------------------------------gtgaaaaaa--------------agaaagatca-----------------------------aaaacttgaaaatcatttttc
i caeRem4.Crem_Contig0  C 0 I 107
s caePb3.Scfld02_0       3318972 157 +  4147112 CACTTC-------TTCTTTGGAAA-------CTGTCGTTCTTCTGAGCATCTTTTTCTGAACCTACCGAAGATTGACTGTCAGTGtttattttgaa------ggaaatagCATTCAAACTGA--------------AACGAGATTACATCTTTACATTTCggattgaaatttgaaagaatcgGGAAATTAT-----
i caePb3.Scfld02_0      I 40 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998  48 -   141584 I

a score=-2097.000000
s ce10.chrX              5073824 31 + 17718866 ----TTACTCAAATCGTTTTACCTGCG-----------ATATTTTT
s cb4.chrX              10401776 42 + 21540570 ----ttgggcaGAACATTTTGACCATGTTCCAGAGTTCATATTTTT
i cb4.chrX              I 6 I 129
s caePb3.Scfld02_0       3319129 26 +  4147112 CGAATTGCTCAA------TAGGCAACGCTGAA--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998 48 -   141584 I
e caeRem4.Crem_Contig0   1913283 107 -  4500979 I

a score=-422.000000
s ce10.chrX              5073855 67 + 17718866 CTGCAAATTGTCGTACT---AATTAACGAAACCCGCAA--AACTTG----------GAATTAT-TGTGTTGTCCTTTTGCATG
s caePb3.Scfld02_0       3319155 80 +  4147112 ATATAAAAAGCCTAATTTCACGTTGATGAAACACTCTATCAACTTACTGGCAAAGCAGATTATGTGTCTTGT---TTTACAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e cb4.chrX              10401818 129 + 21540570 I
e caeSp111.Scaffold567     39998 48 -   141584 I
e caeRem4.Crem_Contig0   1913283 107 -  4500979 I

a score=-11001.000000
s ce10.chrX              5073922 66 + 17718866 TGTTTCAATATGCAATTTTTAAGAAGAACAA----------GAAAAATGGTATAAATTACAAAAAGTGAAAAATTT---------------------------
s cb4.chrX              10401947 75 + 21540570 TGTTTTAATAGG----TTTCCTAAATAATAc----------gaaaaagttctca--------------aaaagttTACAGGAAGTTATGTAttcaaaacactt
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig0   1913390 32 -  4500979 TATTTCAGTAT--------------TAgtat---------------------------------------aattttatgg---------------aaacA---
i caeRem4.Crem_Contig0  I 107 C 0
s caePb3.Scfld02_0       3319235 48 +  4147112 TACTGCATCAT--------------TAATTTCACTCATTCAGAAAACTGAACTA--------------TGAAATTT---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I
e caeSp111.Scaffold567     39998 48 -   141584 I

a score=-19395.000000
s ce10.chrX              5073988 24 + 17718866 ------------------------------------------------------------------------------TGATCTAATTTTAGTTATACAAAC
s cb4.chrX              10402022 87 + 21540570 tttttgtttctgggATATTTGATCTCTTGGTCCTAAGAATGTTTTGATCGTCCATTCTTTTTTGGGCCTTTCATGTTATCAACTAAA---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1913422 29 -  4500979 -------------GATACCTA----TTTGCTACTA-----------------------------------------TCTCATccaat---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40046 23 -   141584 ------------------------------------------------------------------tgattcagcttctaaacaaaaat-------------
i caeSp111.Scaffold567  I 48 C 0
s caePb3.Scfld02_0       3319283 15 +  4147112 --------------------------------------------------------------------------TCTGttaacaattgt-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   460855 1415 +   591668 I

a score=105035.000000
s ce10.chrX              5074012 479 + 17718866  
s cb4.chrX              10402109 437 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1913451 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40069 584 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3319298 444 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   462270 507 +   591668  
i caeJap4.Scaffold17934 I 1415 I 27

a score=3852.000000
s ce10.chrX              5074491 29 + 17718866 GCACACTG-------TAAATTT---------GCTTGGGTTGACAA
s cb4.chrX              10402546 36 + 21540570 GCACAAAT---------AGTATCGTTGGTTGTTTTATTTTGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1913898 39 -  4500979 GCacaagtttttagaaaaatatcgT------TTTTGGTTTGACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40653 35 -   141584 GCacgatg---aagaaaaatatcg-------TTTAGAGTTGACAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3319742 35 +  4147112 GCacgctt---tcaaaaaaattcg-------tttgaTTTTGACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   462777 27 +   591668 I

a score=9503.000000
s ce10.chrX              5074520 127 + 17718866 GAAATG--TGGGTTGG--ATCGGGATTGAAAGTAGATGATA---GGAGTTTTATCC-------------G----------------AAAATGC--TTGCTCAGCAA-----AGAGCAA-AATGACTATGTCGTATTCAGCAGCAATTGTT-GGTTAGCAA---------------TATGGTTGATAT
s cb4.chrX              10402582 143 + 21540570 GAA-----AGAAAGGG--ATCAG--TGGGAAATGAATAGC------TGGTTGACAAGAACAGAAACAAGG----------------AAAACGC--ATGCTCAA--A----GTGAGCCCAAATGACTATGTCTTATTCAGCAGGAATG-----GTTAGAAAAGAGATAGagataattttgatttttat
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1913937 133 -  4500979 GAA-----GGGAAGgggaaacag--ttgaaaatcgATAGAA----GTGTTTTATCC-------------G----------------AAAATGC--TTGCTCCA--------TGAGCGT-AATGACTATGTTGTATTCAGCAggaatgaaa-aattagaatggAAGT--gtatcatttgattttttgt
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     40688 111 -   141584 GAAAGG--GGAAGGGG--ATCAG--TTGAAAGTCGATAGAA----Gtgttttattt-------------g----------------gaaatgC--TTGCTCGG--A-----AGAGCAC-AATGACTATGTCGTATTCAGCAAagattgattattt--------------------tttga-------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3319777 134 +  4147112 GAATTGTAGGATAGGG--ATCAA--TTGGAAGTCGATAGAA----GTGTTTATCCA-------------G----------------AAAATGC--TCATATAG--AGAAAGAGGGTGC-AATGACTATGTCGTATTCAGCAAAGGTTCGAGAGTTACAATAG-----------ACTTTGATtaacat
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17934   462804 123 +   591668 gaaatgtaaggaagtg--aaaat------acatagataaaaTGATAGGCTTTAGCA-------------GATATATTTAGAAATCCAAAATGCGGTTGCTCAA--A-----TGAGCAC-AATGACTATGTCGTATTCAGCAGTGGGT-----TTTAT------------------------------
i caeJap4.Scaffold17934 I 27 C 0

a score=-4078.000000
s ce10.chrX              5074647 15 + 17718866 AAG-AATTG--AAATTTG----
s cb4.chrX              10402728 16 + 21540570 -aa-gtttggtatatgtc----
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1914073 17 -  4500979 -aatgAAAAGTATATTTG----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     40799 17 -   141584 aaa-agttgattaatttg----
i caeSp111.Scaffold567  C 0 I 16
s caeJap4.Scaffold17934   462927 21 +   591668 CAT-AGTTAGAAGTTTTCGTGG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3319911 14 +  4147112 I

a score=147545.000000
s ce10.chrX              5074662 316 + 17718866 GAATTGAAATTTTGAATTTGGA--ATTTAG---AAGTTTGGAATTATCA----CTTTTAGAAACACCGGGGGCGtattttttatttt-------------ttttatttttttCAT---------TGTTCAATGTCTCGAATC----A--TTCTTCACTTTTTCCGGGTCATCATCTCGCAGAATTCTGAAGaaaaaattgaaaa----------taaataaataaatatattaaaattGCTCACCTTGGAAATTGATTTTCCCGTCATTATTTTGATCGACGTGCCTATAAATGGCCTTGATATCCTGATCGGAAAGAGAGTGCCCCATTCTTTGGAAGGCAGTGCGTAATTCGGATCTGAAA
s cb4.chrX              10402744 308 + 21540570 -----gagttttttgggataggtttttttg---gaatttagaaatgtGT------------AACACCGGGTGGATGTTGTAGGTATT-------CA----TCGTGTTCTTTGGAC---------TGTGGTAT---TGGTAGGCAAAAGCCACTTCACTTTCTGCGGGTCATCATCTCGCAGAATTCTGTAATAATGATCGAAAAA---CTTGTATTCATGGGAAAAATTATTA---------ACCtgagaaattgatttttccgtCGTTGTTCTGGTCGACGTGTCTGTAGATTGCCTTGATATCCTGATCCGATAGAGAGTGACCCATTCTTTGGAAAGCAGTTCGAAGTTCAGATCTGGAA
i cb4.chrX              C 0 I 176
s caeRem4.Crem_Contig0   1914090 319 -  4500979 -----GAAGTTGTGgaa---------ttga---aaacttggaaatgtATTCTTGTTGTAGAAACACCG---GGATGTTATTGGTTTC-------CG----TCGTATTCTTTGGACTGCATCATTTGTGGTAT---TCGTCGG----AATTTCTTTACTTTCTGCGGGTCATCATCTCGCAGAATtctgaaagaacaa---aaaaa---cttgtttcgattgaaaataataatatggCTTCTGACCTTGGAAGTTGATTTTTCCGTCATTGTTTTGGTCGACATGCCTGTAGATGGCTTTGATGTCTTGATCGGATAGGGAATGTCCCATTCTTTGGAAAGCAGTTCGGAGCTCGGATCTGAAA
i caeRem4.Crem_Contig0  C 0 I 183
s caeSp111.Scaffold567     40832 324 -   141584 -tttcgttaatTAGCAA-------AATTAA---GAATTTGGAATGGTGT--TTTTTGTGGAAATATCG---GCTTGTTATTCGTTTTGTT----GA----TTGTATTCTTTGGAC-GCATCAATTTTGGTATT--TAGCAGA----a-tcttttcactttctgCGGGTCATCATCTCGCAGAATTCTGtaagacaga---aaaaa---cttgtttaGG-AAAATATATTAATATTGTTGCTGACCttggaaattgatttttccgtCGTTGTTTTGATCAACATGTCGATAGATTGCTTTGATGTCTTGATCGGAAAGAGAGTGTCCCATTCTTTGGAATGCAGTTCGGAGCTCGGATCTGTAA
i caeSp111.Scaffold567  I 16 I 187
s caePb3.Scfld02_0       3319925 335 +  4147112 -gattgaaaatttggaatttgg--tGTTTA---GGGTTTGGCAATGTAT--ATTGGGAAGAAACATCG---GGTTGTTATTAGGTTTTTCTTCGGG----CTGGATCTTTGGACT-GTATCTTTTGTGGTATTTCTCGCAGA----AGTCACTTCACTTTCTGCGGGTCATCATCTCGCAGAATTCTGTAAGAC--A---AAAAA---CTTGTTTAgatagaaaataataatttcctTTCTGACCTTGAAAGTTGATCTTTCCGTCGTTGTTTTGATCAACATGTCTGTAGATGGCTTTGATATCCTGATCGGAGAGGGAGTGCCCCATTCTTTGGAACGCGGTGCGGAGTTCGGATCTGAAA
i caePb3.Scfld02_0      I 14 I 2
s caeJap4.Scaffold17934   462948 311 +   591668 -----------------------TGCTTAAAAGGAGttaagaaaaatag--aaacagAAGCACCattgtgtgtgttttttttgtatt-------tggcTTTTGCGGTCTTTGGCG------GTTTCAAGTAA---TCGTCGG----A----ATTTACTTTCTGCGAGTCATCATTTCGCAAAATTCTATAAGAagac---aataattttttgttgtaaagaAATAGGAAAACTTGTATTCTAACCTTGAAAGTTAATTTTTCCGTCATTGTTGGCGTCAACGTGCCTGTAAATTGCTTTAATGTCTTGGTCGGAGAGCGAATGACCCATCCTCTGGAAAGCTGTTCGCAGTTcggatctgaaa
i caeJap4.Scaffold17934 C 0 C 0

a score=182.000000
s ce10.chrX              5074978 2 + 17718866 AA
s caeJap4.Scaffold17934   463259 2 +   591668 aa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3320260 2 +  4147112 I
e cb4.chrX              10403052 176 + 21540570 I
e caeSp111.Scaffold567     41156 187 -   141584 I
e caeRem4.Crem_Contig0   1914409 183 -  4500979 I

a score=281.000000
s ce10.chrX              5074980 4 + 17718866 AAAG
s caePb3.Scfld02_0       3320262 4 +  4147112 CAAT
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   463261 4 +   591668 aaag
i caeJap4.Scaffold17934 C 0 I 90
e cb4.chrX              10403052 176 + 21540570 I
e caeSp111.Scaffold567     41156 187 -   141584 I
e caeRem4.Crem_Contig0   1914409 183 -  4500979 I

a score=352.000000
s ce10.chrX              5074984 17 + 17718866 AGTGAACTGTATTTCTC
s caePb3.Scfld02_0       3320266 13 +  4147112 ACt----tgtgtttctc
i caePb3.Scfld02_0      C 0 I 183
e caeJap4.Scaffold17934   463265 90 +   591668 I
e cb4.chrX              10403052 176 + 21540570 I
e caeSp111.Scaffold567     41156 187 -   141584 I
e caeRem4.Crem_Contig0   1914409 183 -  4500979 I

a score=0.000000
s ce10.chrX              5075001 608 + 17718866  
e caePb3.Scfld02_0       3320279 183 +  4147112 I
e caeJap4.Scaffold17934   463265  90 +   591668 I
e cb4.chrX              10403052 176 + 21540570 I
e caeSp111.Scaffold567     41156 187 -   141584 I
e caeRem4.Crem_Contig0   1914409 183 -  4500979 I

a score=804.000000
s ce10.chrX              5075609 14 + 17718866 TGCAGTTTTTCAAG
s caeSp111.Scaffold567     41343 14 -   141584 TGTGGTTTTTTAAA
i caeSp111.Scaffold567  I 187 C 0
e caePb3.Scfld02_0       3320279 183 +  4147112 I
e caeJap4.Scaffold17934   463265 90 +   591668 I
e cb4.chrX              10403052 176 + 21540570 I
e caeRem4.Crem_Contig0   1914409 183 -  4500979 I

a score=91.000000
s ce10.chrX              5075623 1 + 17718866 T
s caeRem4.Crem_Contig0   1914592 1 -  4500979 T
i caeRem4.Crem_Contig0  I 183 C 0
e caePb3.Scfld02_0       3320279 183 +  4147112 I
e caeJap4.Scaffold17934   463265 90 +   591668 I
e cb4.chrX              10403052 176 + 21540570 I
e caeSp111.Scaffold567     41357 0 -   141584 C

a score=67.000000
s ce10.chrX              5075624 1 + 17718866 T
s caeRem4.Crem_Contig0   1914593 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41357 1 -   141584 C
i caeSp111.Scaffold567  C 0 I 4
s caeJap4.Scaffold17934   463355 1 +   591668 T
i caeJap4.Scaffold17934 I 90 C 0
e caePb3.Scfld02_0       3320279 183 +  4147112 I
e cb4.chrX              10403052 176 + 21540570 I

a score=104544.000000
s ce10.chrX              5075625 102 + 17718866 ACCTTGTTATGTAACCATCTCCGTCAACATCCAACTCCTCAAAAACAGCCTTCAATGAAAGCGAAAGTGGGTTCGCTTTGGCGATTACAAGGAATTCTGAAA
s cb4.chrX              10403228 102 + 21540570 ACCTAGTGATGTAGCCATCTCCATCGACGTCCAACTCCTCGAACACTGCCTTCAGTGAAAGTGACAATGGATTCGCTTTGGCAATCACAAGGAACTCTAGAA
i cb4.chrX              I 176 C 0
s caeRem4.Crem_Contig0   1914594 102 -  4500979 ACCTGGTGATGTAGCCATCTCCATCAACGTCCAACTCCTCGAAAACTGCCTTCAAAGAGAGTGAAAGTGGATTCGCTTTGGCAATCACaaggaattctgaaa
i caeRem4.Crem_Contig0  C 0 I 60
s caeSp111.Scaffold567     41362 102 -   141584 ACCTGGTGATGTAACCGTCTCCATCAACGTCCAACTCTTCGAACACTGCTttcaatgaaagagaaagtggATTTGCCTTCGCGATCACGAGGaactctgaaa
i caeSp111.Scaffold567  I 4 C 0
s caePb3.Scfld02_0       3320462 102 +  4147112 ACCTGGTGATGTAACCATCTCCATCGACATCCAACTCCTCGAACACTGCCTTTAACGAGAGCGAGAGTGGGTTGGCCTTGGCGATGACGaggaattctgaaa
i caePb3.Scfld02_0      I 183 I 543
s caeJap4.Scaffold17934   463356 102 +   591668 ACCTGGTAATGTAGCCATCTCCATCAACATCCAATTCTTCGAAAACCGCCTTCAAGGACAGAGAAAGGGGATTTGCACGAGCGATTACAAGAAACTCTACAA
i caeJap4.Scaffold17934 C 0 C 0

a score=-155.000000
s ce10.chrX              5075727 1 + 17718866 A
s caeSp111.Scaffold567     41464 1 -   141584 t
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   463458 1 +   591668 A
i caeJap4.Scaffold17934 C 0 I 37
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e cb4.chrX              10403330 0 + 21540570 C
e caeRem4.Crem_Contig0   1914696 60 -  4500979 I

a score=-793.000000
s ce10.chrX              5075728 8 + 17718866 TAGAAAGT--
s cb4.chrX              10403330 8 + 21540570 --AACGATAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     41465 8 -   141584 tcagaGGT--
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e caeJap4.Scaffold17934   463459 37 +   591668 I
e caeRem4.Crem_Contig0   1914696 60 -  4500979 I

a score=764.000000
s ce10.chrX              5075736 32 + 17718866 AAAGTATTTTATTAGTGAAATTAAAAGTTGGC
s cb4.chrX              10403338 25 + 21540570 GAAGTATT-------TACGGTTAAGAATTGGC
i cb4.chrX              C 0 I 4
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e caeJap4.Scaffold17934   463459 37 +   591668 I
e caeSp111.Scaffold567     41473  0 -   141584 C
e caeRem4.Crem_Contig0   1914696 60 -  4500979 I

a score=0.000000
s ce10.chrX              5075768 632 + 17718866  
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e caeJap4.Scaffold17934   463459  37 +   591668 I
e cb4.chrX              10403363   4 + 21540570 I
e caeSp111.Scaffold567     41473   0 -   141584 C
e caeRem4.Crem_Contig0   1914696  60 -  4500979 I

a score=567.000000
s ce10.chrX              5076400 23 + 17718866 TGTTTCTCAGTTCTGTTATGCTG
s caeSp111.Scaffold567     41473 23 -   141584 TGTTTCATGATTCTCAAATCTTG
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e caeJap4.Scaffold17934   463459 37 +   591668 I
e cb4.chrX              10403363  4 + 21540570 I
e caeRem4.Crem_Contig0   1914696 60 -  4500979 I

a score=-1780.000000
s ce10.chrX              5076423 1 + 17718866 --C
s cb4.chrX              10403367 1 + 21540570 -C-
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold567     41496 1 -   141584 A--
i caeSp111.Scaffold567  C 0 I 2
e caePb3.Scfld02_0       3320564 543 +  4147112 I
e caeJap4.Scaffold17934   463459 37 +   591668 I
e caeRem4.Crem_Contig0   1914696 60 -  4500979 I

a score=627.000000
s ce10.chrX              5076424 2 + 17718866 TT
s cb4.chrX              10403368 2 + 21540570 CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1914756 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold567     41499 2 -   141584 TC
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3321107 2 +  4147112 TC
i caePb3.Scfld02_0      I 543 C 0
e caeJap4.Scaffold17934   463459 37 +   591668 I

a score=107759.000000
s ce10.chrX              5076426 147 + 17718866 ACCTTGGAAATCAATATTTCCATCACAATCCTTGTCAGCGGCCTGGAACATTGCGTCGAGCTCGTCTTCCGTTGGAGACTGTCCCATTTTTTGCATGACAGCGCGCAGTTCTTCCTAAA------ATAA----ACACAAACT---TTTTTTTAAATTGTC
s cb4.chrX              10403370 151 + 21540570 ACCTTGGAAGTCAATATTTCCATCATGGTCCTTGTCGGCGGCTTCGAACATGGCGTCAAGCTCGTCTTCAGTTGGAGACTGACCCATTTTTTGCATCACCGCACGGAGTTCTTCCTGGA------ATAAAAGTTCTTATAAT---CTTCTGCAAATTTTC
i cb4.chrX              C 0 I 704
s caeRem4.Crem_Contig0   1914758 146 -  4500979 ACCTTGGAAATCAATGTTTCCATCATGATCTTTGTCGGCTGCCTCGAACATAGCATCAAGTTCGTCTTCAGTTGGAGACTGTCCCATTTTCTGCATGACAGCACGGAGTTCTTCCTAAA------ACA-----TATGACACT---GTACTATGGAGTCCC
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     41501 140 -   141584 ACCTTGGAAGTCAATATTTCCGTCGTTGTCCTTGTCAGCAGCGTGGAACATGGCATCCAATTCATCTTCAGTTGGAGATTGTCCCATCTTCTGCATAACTGCACGGAGTTCCTCCTAAA------Cca-----gtttttcct---tttc----gaatt--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3321109 144 +  4147112 ACCTTGGAAATCGATGTTTCCATCGCAGTCCTTGTCGGCCGCTTGGAACATGGCATCCAGCTCATCTTCGGTTGGAGATTGTCCCATCTTTTGCATCACAGCACGGAGTTCCTCCTAAAACCTATCAA-----ACTTATacc---cct------attt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   463496 149 +   591668 ACCTTCAAAATCAATGTTCCCATCACGATCCTTGTCGGCCGCTTGGAACATTGCGTCCAGTTCGTCTTCAGTTGGAGACTGacccattttttgcataacTGCGCGCAGTTCTTCCTGGA------ATCAAA--AGTTCAACttaatttctagaaaat---
i caeJap4.Scaffold17934 I 37 C 0

a score=-5349.000000
s ce10.chrX              5076573 19 + 17718866 TGATTTTCCAGATTATTCA
s caeRem4.Crem_Contig0   1914907 12 -  4500979 ---TTATTTCTCACA----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     41641 15 -   141584 ---tcttccaGAACAACA-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3321253 15 +  4147112 ---tttctttgttcaact-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   463645 10 +   591668 --------agGTTCAACT-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10403521 704 + 21540570 I

a score=126020.000000
s ce10.chrX              5076592 170 + 17718866 TACCCTTTGAATGTATCCATCTCCGTTGAGATCGAACTCTCTAAAAATTCCCTTCAAATCATCCTCTCGAATCTCTCCAACTTCTCCCTGCAA----AAG----------------------------AAAAGCGCCAGCTA-TTTTTACTTAAGTATTCATATTCTCC-TTTTCTTCTTTTCATTCAATGTTTGCTTAGCAAA
s cb4.chrX              10404225 184 + 21540570 TACCCTCTGAATGAATCCATCGCCATTGAGATCGAACTCTCTGAAGATTCCCTTCAAGTCGTCCTCTCGGATTTCTCCAACTTCTCCCTGCAA---AAAGAAGTAGACGTTGTATGATGAAGAAAACTAGCCGTACATGTCA-TTTTTGCTTTAGTATTCATATTCTTA-TGTT---------------TGTTTGCATAGCGAA
i cb4.chrX              I 704 C 0
s caeRem4.Crem_Contig0   1914919 156 -  4500979 AACCCTTTGGATGAATCCATCTCCATTCAAAtcgaattctctgaaaattcccTTCAAGTCGTCCTCTCGGATCTCTCCAACTTCTCCCTGCAA---GAAA----------------------------AGACGTACATGTCA-TTTTTGCTTTAGTATTCATATTCTTC-TGTC---------------TGTTTGCTTAGCGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41656 155 -   141584 AACCCTTTGAATGAATCCATCACCATTGAGATCGAACTCTCTAAAAATTCCCTTCAAGTCGTCCTCTCGGATCTCTCCAACTTCTCCCTGAAA----AGA----------------------------AGGCGTACAtgtcattttttgctttagtattcatattttt--ggtG---------------TATTTACACAACGAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3321268 158 +  4147112 GACCCTTTGAATAAATCCATCTCCATTGAGGTCGAACTCTCTGAAGATTCCCTTCAAATCATCCTCTCGAATCTCTCCAACgtcattctggaaaatgaga----------------------------agacgTGTATGCCA-TTTTTGCTTTagtattcatattttt--tgtc---------------tgtttgcACAGCGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   463655 150 +   591668 AACTCTTTGAATGAATCCATCGCCATTGAGGTCGAACTCTCTGAAGATGCCCTTCAAGTCATCCTCGCGGATCTCACCGACTTCTCCCTGAAG-----------------------------------ATGTGTG---GGCA-TGTATAAATTTCTATTCATCTTTTTTGCGGT---------------TGTTTGCACAGTGAA
i caeJap4.Scaffold17934 C 0 I 1221

a score=4306.000000
s ce10.chrX              5076762  62 + 17718866 CTACCTGCCTGCT-----------------TGTTTTTTCGAC-TTTTATAGGTTCCCACAAAA--ATGAAACATTTCAAATT-------------------------------------
s cb4.chrX              10404409  46 + 21540570 CTgccaaacagaaaaaaaagagccaaGGTGTGTTTC-TCAAC------------------------------------------------------------------------TTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1915075 109 -  4500979 CTGCCAAACACCA-------AGCCAAGGTGTGTTTTGTCAACTTTCTTCTAGTTCCCAGACGG---CAAGAAATAGTGAATGGAAGGAGAAAATAATGActaaaaagaaacattttacC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41811  74 -   141584 CTGCCAAACGTCG-------AGCCAAGGTGTGTTTTGTCAAC-TTTCTTTAGTTCACACACACAAACGAGAAATAgtaaatg-------------------------------------
i caeSp111.Scaffold567  C 0 I 102
s caePb3.Scfld02_0       3321426  71 +  4147112 CTGCCAAACAGCG-------AGCCAAGGTGTGTTTTGTCAAC-TTTCTTCGGTTCTCACACGC---CGAAAAATAgtaaatg-------------------------------------
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold17934   463805 1221 +   591668 I

a score=-14170.000000
s ce10.chrX              5076824  89 + 17718866 ----------TTGCA--ATTCTTACACTTCCTACACGC--TGTCTAAA-----AATTATAAGAAGAAACAG--TTCGACAAAGTTCCTGGTTATCAATGAACGAACTATG-------
s cb4.chrX              10404455  87 + 21540570 ----------TTTAG--TTC------TTTCTCACacgt--ttccaaaaaaaaaaatagtaagaGAGAATGGGAATGGAATGGAA-TATAATTTTAATTATGCAA--AATG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1915184  74 -  4500979 ----------TTGAA--ATT------CAGCTGAGAATTCATTCTAAAGATGACAAT-TCAAGAATGAATTG-----------------CCCCTCTTTTATACAATTAAAG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3321511 107 +  4147112 atgacaaCAATTGAAACACT------TTACCTTCAAGT--TTCGCAAGGCATTACTATCCATTTGGAGTGAAATTCGAAAGTAATTTTGGTCGAAATCATCCAG--AACAAATAATT
i caePb3.Scfld02_0      I 14 I 5
e caeJap4.Scaffold17934   463805 1221 +   591668 I
e caeSp111.Scaffold567     41885 102 -   141584 I

a score=89848.000000
s ce10.chrX              5076913 668 + 17718866  
s cb4.chrX              10404542 722 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1915258 655 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41987 681 -   141584  
i caeSp111.Scaffold567  I 102 C 0
s caePb3.Scfld02_0       3321623 719 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold17934   463805 1221 +   591668 I

a score=3137.000000
s ce10.chrX              5077581 101 + 17718866 A----AAAATGTAAAAGTTG--GAGAAAGTGCACGCTCAA-----ATTTGTCATCTTTTTTTAG-------TTTCCCATTTTGG----------TTTTGTGCAGTGTTCTCCAAGAA------GAATGACGTTTT
s cb4.chrX              10405264 123 + 21540570 ATAAGAAGACAGagatttttggtgaaaaatgggatccaaaaa---gttttctccatttttcttgacATC---------CGCAAGAGTTCTTCTTCTATTCAAAGtgttcgaaaaaagaagacaggGTGACGTATC
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   1915913 116 -  4500979 a----aagaaaaaaagtttt--tgagaaatgagctCGAAAAAGTTGTTCTTTCCGTCTTCCTCGACGTCTTTTTCTTATGCAAG-----TCCTATTTTCTGATGTGTTCTAA--------ACTGGGTGACGTTTT
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold567     42668 110 -   141584 a----aagaaaaaagtttt---tgaaaaatgggcttCAAAGAA--ATTTGCTCCATTTCTGCTGGCATCTTTCTTCTCGTTCAG----------CTTTTTGATGTGTTCTAAAAAAG------GAGTGACGTTTT
i caeSp111.Scaffold567  C 0 I 40
s caePb3.Scfld02_0       3322342 109 +  4147112 a----aagaaaaaagttttt-gtgaaaaatgggcTTCAAAGAA--ATTTGCTCCATTT-TCTTGACTCTGCTCTTTTCGTCTAG-----------TTGCTGATGTGTTCTAAAAAA-------GAGTGACGTTTT
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold17934   465026  80 +   591668 a----aaaaaGGGAGAGTTC--GGAAAAGTGgggca---------attttcttttcttttctttacaaattttgtttgctcgaa---------------caaactttttt-------------------------
i caeJap4.Scaffold17934 I 1221 C 0

a score=-7262.000000
s ce10.chrX              5077682 26 + 17718866 ------AGTAATACAAAGGGAAAGTGAGAAAT
s cb4.chrX              10405405 12 + 21540570 ------GAAAATACAACA--------------
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   1916050 13 -  4500979 ------AATAAGACGGCAT-------------
i caeRem4.Crem_Contig0  I 21 I 6
s caePb3.Scfld02_0       3322474 17 +  4147112 ------ACTAA-ACATCATGAATA--------
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold17934   465106 26 +   591668 GGCAGTTCTTATGTGACGTTAAGGTT------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     42778 40 -   141584 I

a score=282087.000000
s ce10.chrX              5077708 393 + 17718866 TGACAATGATAAGAAGCTTATCAA-------------------------------TGGAAACATTTTTCGAATTTCGAAGGAAGGAA-----GAATTGTGGAAGC--GGTGTAGAACATACCTGA---TTCTTCTTCTTTGAAGAGCAGCAGGCGCCCATGTTTGTTTGG---CAGAATACAGGC-----GAGTCTCAGTC-AGGCAATCGCTTGTT------GGCGGTG-G-GGGAGGAGGACACCGAAAGAGAGTTGATGGCTGGTCGCACCG---TGTGTGTGTGT--------TGTATGAAAGTACGCGTGTTTGATTCGAAGACGAGAATGCGGGCGGCGCAAAGAG--AAACGAGAAACAAACGACGACACTACCAGCA-----GGACCCCCTTGTTAGTCACAAAAAA------------------GAGGAGGAGACGCACCGGGCAG------CCTTCGTC---GTGCCTAACAGCGTCGTGCCCCCG---------
s cb4.chrX              10405417 413 + 21540570 --AGTATGATAAGAGGCTTATCACTGTAGATGGCCAAGAATGGCAACGAGCGGCAAAGAGATGTATATGAAGACACACAAGAAGAGGTGTCAGAACTATTACAGC---GTGT---ACATacctga---ttcttcttctttgaagAGCAGCAAGCGCCCATGTTTGTCTTGGCACAGAATACAGGCAGAGAAAGAGTCAGTCAAGGCAATCGGTTGTCTCGGGGACTGTTGTGTGGGAGGAAG-----------GAGTTGATGGCTGGTCGCACCG---TGTGTGTATGT--------TGTATGAAAGTACGCGTGTTTGATTCGACGACGAGAATGCGGGCGGCGCGAAGAG--AAGCGAGAAACAAACGACGACACTACCAGCA-----GGACCCCCTTGTTAGTcacaaaaaaa----------------ggaggaggagaCGCACCGGGCAA------CCTTCGTT---GT---TGTC------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1916069 382 -  4500979 TGATTGTGATAAGAGGCTTATCACTTCAACTAGGCAGAACTGACACTGA---------CGACATATTTCGAATCGC----GAGAAACTGT--GAATTGTAGAAATA-GGTAT---ACATAcctga---ttcttcttctttgaagaGCAGCAGGCGCCCATGTTTGTTTGG---CTGAATACAGGC-----AAGAGTCAGTC-AGGCAATCGGTTGTT------GCTGGTG-GTGGGAGGAA------------GAGTTGATGGCTGGTCGCACCG---TGTG----TGT--------TGTATGAAAGTACGCGTGTTTGATTCGACGACGAGAATGCGGGCGGCGCGAAGAG--AAACGAGAAACAAACGACGACACTACCAGCA-----GGACCCCCTTGTTAGTCacaaaaaa------------------gaggaggagacgCACCGGGCAA------CCTTCGTT---GTCCCTAGC------------------------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold567     42818 380 -   141584 TGATTGTGATAAGAGGCTTATCAC---------ATAAAGTTAGCACCGA----CCTGgcaacatttttcgaatcgtcGCAAAGAGAAT------ATTGTAGGAAAATGGTGT---ACGTAcctga---ttcttcttctttgaagaGCAGCAAGCGCCCATGTTTGTTTGG---CAGAATACAGGC-----GAGAGTCAGTC-AGGCAATCGGTTGTT------GGTGGTG-GTGGGAGGAA------------GAGTTGATGGCTGGTCGCACCG---TGTG----TGT--------TGTATGAAAGTACGCGTGTTTGATTCGACGACGAGTATGCGGGCGGCGcgaagag--aaacgagaaacaAACGACGACACTACCAGCA-----GGACCCCCTTGTTagtcacaaaaaaa-----------------gaggaggagacgCACCGGGCAA------CCTTCGTC---GTCCCTAGC------------------------
i caeSp111.Scaffold567  I 40 C 0
s caePb3.Scfld02_0       3322491 389 +  4147112 TGATAATGATAAGAGGCTTATCAC---------ATCAAACTAGCACCGA----CCTggcaacatttttcgaatcgtAGT-GAGAGAGTTG--GAATTGTAGCAAAAAGGTGT---ACGTAcctga---ttcttcttctttgaagAGCAGCAGGCGCCCATGTTTGTTTGG---CAGAATACAGGC-----GAGAGTCAGTC-AGGCAATCGgttgtt------ggtggtg-gtgggaggAA------------GAGTTGATGGCTGGTCGCACCG---TGTG----TGT--------TGTATGAAAGTACGCGTGTTTGATTCGACGACGAGAATGCGGGCGGCGCGAAGAG--AAACGAGAAACAAACGACGACACTACCAGCA-----GGACCCCCTTGTtagtcacaaaaaaa-----------------gaggaggagacgCACCGGGCAACCTTCGCCTTCGTC---GTCCCCAGC------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   465132 373 +   591668 ---------TAAAAAGTATACAAT--------------ATTGTTGATAA----------GAGGCTTATTGAAAAGCAGTAAAgaaca-----aaaatgtttcaat----tGC---ACCTACCTGATGGTTCTTCTTCTTCGAAGAGCAGCAGGCGCCCATGTTTGTTTGG---CTGAATACAGAC------------AGTC--------------------------------------AA------------AGGTTGATGACTGGCCACACCGtgatgtgtgtgtgtggggtGTACGTATGAAAGTACGTGTGTTTGATTCGGCGACGAGAATACGAGCGGCGCGAagagaaaaacgagaaacaaaCGACGACACTACCAGCAAGGAGGGCCCCCCTTGTtagtcacaaaaaaaaagaagaggagaaggaggaggaggaggcgc-CCGGGCAA------CCTTCACCCGTGTTTTCGGC---------------ACGCCCCCG
i caeJap4.Scaffold17934 C 0 I 3105

a score=31129.000000
s ce10.chrX              5078101 36 + 17718866 C---CATCAGACACCGAGACCGAAATCGAGACACGCCCC
s cb4.chrX              10405830 36 + 21540570 C---CTTCAGACACCGAGACCGAAATTGAGACACGCCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1916451 36 -  4500979 C---CTTCAGACACCGAGACCGAAATTGAGACACGCCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43198 39 -   141584 CCTTCTTCAGACACCGAGACCGAAATCGAGACACGCCCC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3322880 36 +  4147112 C---CTTCAGACACCGAGACCGAAATCGAGACACGCCCC
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=-7162.000000
s ce10.chrX              5078137 66 + 17718866 ---GAGATAGGCCCCCACAACATTTCGAATACAGTCCCCTCATTCACGTATC-------------TTCATTTTGTTGATAAA-----
s cb4.chrX              10405866 33 + 21540570 CATTCTAGGGCCCTTA-------------------ccgttgatttttttctc-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1916487 56 -  4500979 ---TCTACAGAC-----------------------CCCTTGAtttttttGGCATTCGGAATGAAATACAGTGTCTTGATGAG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43237 66 -   141584 CA-CCGATAGGCCCT--------------------gcgcttctttttttggtattcaaaatcaaacaCAGTCCCTTTAACAGAATGT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3322916 56 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=1156.000000
s ce10.chrX              5078203 41 + 17718866 ---TGATAAAAACA----TC--CTTGAGAAATACACA--ACTGTTCTTCTCA
s cb4.chrX              10405899 24 + 21540570 --ttggcAAAAATACAGTTCCTCTTG--------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1916543 21 -  4500979 TGTTGATAACAACA----TCTTCTT---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43303 42 -   141584 ---TGATAACAACA----TCCTCTCGAGAAATACACA--AAcgttcttttc-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3322972 45 +  4147112 ---TGATAACAACA----CCGTCTTGAGAAATACACAACAACGTTCTTCACA
i caePb3.Scfld02_0      I 56 I 1153
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=5513.000000
s ce10.chrX              5078244 231 + 17718866 T----TGACGCTCTTTCTTTCCTTTTCTCTCTCCCGTTCTTTCGTTTACGGTATCAAAATTGAGTTTTGGCCAATTATCTGTGGCTG-ATTGATAGA--AAGGACAAGGATCAGT-TGaagcaaaaaaa------ggaaaaaaaa--acaaaacaaaacgagataagcgacagaaaaaacataaaaaTGGGACGAAAATTGATGAAAGACATATTAGAA--------TTACATAGCAACGGTAACCCCTCATTAG
s cb4.chrX              10405923 196 + 21540570 TCTGATgagaacttcttttttttcagtacacAAATGT-----------------TCAATCTGAGTTTTTACTAATTACAAGAAACGATAGTGAT-GT--GAGATCAAggat-----tgaaattgaaaaa------tggatagTGGATAACAAGAAACACGAGAAGA-----taagaaaacgagagaaagg-----AAATCACTC----------TATAA--------TTGCATGGCAACCATTACCTGTAATTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1916564 193 -  4500979 -----CGAGA--------------AATACACAAATGTTCTT------------CTCAAACTGAGTTTTGACCAATTACAAATAG----ATTGATAGT--GAGGGCAAGGATCAGTGTAAAACAGgaaagatcaactgaagaatgt-taaacagaaagatgaaaaaggaattgaagaagagaagaagaagt-----aaacCAATCA---------CACAA--------TTACATAGCAACCGTAACCTGTAATT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43345 160 -   141584 --------------------------------------------------------aaattgagtTTTGACCGATTACAAAGAG----ATTGATAGTACGAGGGCAAGGAA-----CTAGACCAAAACA------ctaagaaaat-caaaaaataagatttg---------gaggagaagatgaagaagg-----aaacgaATCA---------ACTAACGGGCATGTTACATGGCAACCGTAACCAACAATTAG
i caeSp111.Scaffold567  C 0 I 118
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=-7789.000000
s ce10.chrX              5078475 115 + 17718866 CGGCTACCTT-----GAGTTTTTG-----ACACTTGTTTTCAAAATGAAGAAG---------GATATTT--TGGTATATTTTCCA-------AGTTTAATTTAGAACGACAAGAATTCAATTTCCAAAACATCAATAAGAAAA
s cb4.chrX              10406119 135 + 21540570 AAG----TTTGGAAGAAAACAAAGTTAGCATACATGTTgccaaacagaaaaaaaaacattgtgaAATTCAATGAATCAGTTCACATCACCGATAATTGACTCAAAACGATTTGGAATTA---TTCGAGATAT-GATAagaaaa
i cb4.chrX              C 0 I 214
s caeRem4.Crem_Contig0   1916757  62 -  4500979 ---------------TAGTCATAG-----ATGCGTGTTGTGGTATCTAGAAAAGCA------AAACTTC------TTAGTTCTCA-----------------AATACG---------------------TAT-----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e caeSp111.Scaffold567     43505 118 -   141584 I

a score=-1203.000000
s ce10.chrX              5078590 128 + 17718866 CGAGATATTTGTGGAACAAACCTGAGTGCATCCTAGTAACACGTTTCAGTATTTCAACAAGCTTGGGTgtaggcagaagtaggcagtagtaggcagaaACAGGCAGGCGACAAATCTATGAAGTTCTA
s caeRem4.Crem_Contig0   1916819  60 -  4500979 ---TGCAGTCATGAAACAAA--------------------ACGTATCAAT-TCACATCAC-----------------------CAGTAATTGAC---------------------CTACAATGTTCTG
i caeRem4.Crem_Contig0  C 0 I 91
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e cb4.chrX              10406254 214 + 21540570 I
e caeSp111.Scaffold567     43505 118 -   141584 I

a score=0.000000
s ce10.chrX              5078718 46 + 17718866 CTATTGCATTGACCCGAAATTATGCTTGTAGGTAAGTAGGCCTAGT
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e cb4.chrX              10406254 214 + 21540570 I
e caeSp111.Scaffold567     43505 118 -   141584 I
e caeRem4.Crem_Contig0   1916879 91 -  4500979 I

a score=881.000000
s ce10.chrX              5078764 25 + 17718866 CATTTGAGTTGCTGATCGCAGAGTT
s cb4.chrX              10406468 25 + 21540570 AATTCGAATGGAAAATCACAGAATT
i cb4.chrX              I 214 I 381
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e caeSp111.Scaffold567     43505 118 -   141584 I
e caeRem4.Crem_Contig0   1916879 91 -  4500979 I

a score=0.000000
s ce10.chrX              5078789 63 + 17718866 CTAGCCTCAAATGGGTGGATGGGCCCACTAGGCCTTTCTAACAAAAGTACTGCTTTTGACAAG
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e cb4.chrX              10406493 381 + 21540570 I
e caeSp111.Scaffold567     43505 118 -   141584 I
e caeRem4.Crem_Contig0   1916879 91 -  4500979 I

a score=-1490.000000
s ce10.chrX              5078852 251 + 17718866 AAACTTTTAGACCGAAGTAATTAACATTTAGAAAAGCCTTTTAATTAGTGGTCCATCGCTGACCTGTATTTCCGTTCGCTGCAAATCGGACTAAAAACTGTTTTTGTATAGAATGTGCACTCAAATTGTGTTAAGGTTATTTCTTAAAATCTTGTCTAAACTTTAACA----TGCAGCCTAGTATTTTCCCTTTTTCATGCAATGTATGATCTAAAACGAGCCTGAAAATATTATAC-------CCATTATAAAATATTGCT
s caeRem4.Crem_Contig0   1916970 209 -  4500979 aaacgttTACA-CGATctattta----------------tctgttttttgatctatcGATGATGAGTTGCGCCTGATTATCAACATGTAAACAATAacagttttcata--------------aaattttatc--GGTTGTACT---AGTTTCTGTTCAGATTTCAATATCATTGCATATTGATAGTTGTTTAGGTTCACCGACTGTAT---------------TTTGATTACTGTACAATGCAACTACAGTAAAATCTCG--
i caeRem4.Crem_Contig0  I 91 C 0
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e cb4.chrX              10406493 381 + 21540570 I
e caeSp111.Scaffold567     43505 118 -   141584 I

a score=614.000000
s ce10.chrX              5079103 9 + 17718866 TCTTTTTAT
s cb4.chrX              10406874 9 + 21540570 TCATTTTAT
i cb4.chrX              I 381 C 0
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I
e caeSp111.Scaffold567     43505 118 -   141584 I
e caeRem4.Crem_Contig0   1917179 0 -  4500979 C

a score=-11055.000000
s ce10.chrX              5079112 51 + 17718866 --------------------TTGATCTTTAGAAATAATGAAAA-----AAACCCAAGTATTTCGACATTTTCCAGG---------
s cb4.chrX              10406883 78 + 21540570 TAGAGCGTTTACGGAATTCCTCGACTTTACgtagttacagtaatcctgacatccatttcattttgaatatttcacaAT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1917179 53 -  4500979 ---AACTT-------ACTTCCCGAAACAACGAGgt--caataa-------------tttattcaaaagaTTTCATAAT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43623 57 -   141584 ----TCGT--------TTTCTTAaaata------ttccagaaa-----acaCAGTTCTTGTT-----GATTTCGTAACCTTTTCA
i caeSp111.Scaffold567  I 118 C 0
e caePb3.Scfld02_0       3323017 1153 +  4147112 I
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=39181.000000
s ce10.chrX              5079163 65 + 17718866 AATAT--------ACATCA-TTTTTGGTTATATTTTGTGTTTCAAGTCATTTCAAAACAAACA--------TTCTGACCCGA
s cb4.chrX              10406961 80 + 21540570 TCGATTTCCCAACACatcacttttttgt--tattatGTGTTTCAActcatttcaaaacaaatatcGTCATCTTCTGACCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1917232 71 -  4500979 ACTat--------acatca-ttttttgt--tatttcgtgtttcaagtcatttcaaaacaaacatCGTCATCTTCTGACCTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43680 71 -   141584 TATat--------acatca-ttttttgt--tgttttctgtttcaagtcatttcaaaacaaacatCGTCATATTCTGACCCAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3324170 72 +  4147112 AACct--------acatcatttttttga--tgttttgtgtttcaagtcatttcaaaacaaacatcGTCATCTTCTGACCCAT
i caePb3.Scfld02_0      I 1153 C 0
e caeJap4.Scaffold17934   465505 3105 +   591668 I

a score=11169.000000
s ce10.chrX              5079228 173 + 17718866 TGGAACA--CGAGAT-GAAATTCGAAACTT--TTTGT----CGTGGC--GTCTACACCTTACATATTCTCTTCAGTAATTTTCTCCAGTCATGCTGAAACAATTTTTTT--------------------CAAAACCAAGCCAA--TAAACA----CACTTTTGACC-----TAAAGACTAATTTG-TTGATAATTCACATCTTTACGTGC------GCTGCG
s cb4.chrX              10407041 181 + 21540570 CCGAACACGCGAGAT-GAAATTCGAGACTT--TTCAA----CTCTGTC------TGCCGT-TAACTCTTCTGTCCC-ACCGCCATCGGTCACACT----GAATTCctga--------------tgaagaaaaaaaaatactaaccCTAATACAATGATTGTTTCTCATCTCGAAAAACTAATTAGTTTGATAATTCGTGT-TTTACGTGC------GCAGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1917303 154 -  4500979 CCGAACA--CGAGAT-GAAATTTGAGACTT--TTCGA----CGTTTTCATTCCAcgtctt-catctttttttgtct-cCAGCCATCGtttcttct----------------------------------caaacaattaCTGACTCTAATA----AAGAGTCTCCC---------AACTAATTAG-TTGATAATTCACGA-TTTACGT--------GCAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43751 182 -   141584 TGGAACA--CTAGAT-GAAATTTGAGACTT--TTCGT----CGTCACCTGTCTACGTCTT-CATACTTCT-----------CAATCGGTCacact----caattttttttgttctcttctccttcttcgagaaaaaatactGACCTTAATA----CAATTTCTCTC---------GACTAATTAGTTTGATAATTCATGA-TTTACGTGCCTTTGCGCAGT-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3324242 156 +  4147112 TCGGACA--CGAGATGGAAATTTGAGACTT--TTCGTCTGCCGTCACCTGTCTACGTCTT-CATTCTTC------------CAAAcgg------t----caactttttt------------cttccacagaaaaaatgactgaCCTTAATA----CAATGTCTCTC---------AACTAATTAG-TTGATAATTCACGA-TATACGTGC------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   468610 153 +   591668 TGGAACA--CGAGCT-GAAATTTGACACTTGCTTCTA----CAT-ATTTGTTTCTTTATT-CAGGTATTCCAGCCACCCCGCACCCAG-----------AAAAGTGACT--------------------AGAATGCAAGGAAGTTGTTATC----AAAATTTGCCC----------ATTAATTTG-TTGATAATTTACGT-GCGTCGTG-------------
i caeJap4.Scaffold17934 I 3105 I 75

a score=900.000000
s ce10.chrX              5079401 34 + 17718866 CACCAATC------AAAAACTATCAACAAAAAAGA-------------GATAG
s cb4.chrX              10407222 53 + 21540570 CGTTTCTCCCTTCGATTGGCTATCAATACGATCGGTCTTTATTCTTCCGACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1917457 43 -  4500979 CGTC----------GTCAGCAATCGAGACGATCGGTCTTTATTCTTGCGACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43933 41 -   141584 CG------------ACTAGCTATCGAGAAGATCGGTCTTTATTCCCGCGCCAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3324398 32 +  4147112 --------------GGTGTGTGTCGTATCTATCGGTCTTTATTCTC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   468763 75 +   591668 I

a score=15221.000000
s ce10.chrX              5079435 253 + 17718866 A--CTGTACCA---TTTTCAATCACGTATGTATTATCGAAGCGA----------------------CTGTCAAAACCAATTAAA-GTTGCGTGTGCG-----------GAATCTAC--------------GCCAACTGG-----TTTTTATT--TTTGCAATGTTGTTCGAA-------AAAATA--GT-----------------TTTTTTTCGAT---CACATCGCGATGTTATACTTTAAGTGT----TTT----------------------TTTCATGGaaaatata---aaaatatagtataaaaataatttGTCATTTATAAAGTAA-TTTTGATACAAAAATAATGAGTATA-------GACAAATAAGGT
s cb4.chrX              10407275 313 + 21540570 A--CTGTACCA--ATTCTTTATCACGTATAT----ACGAGAATGAACTACCC-------AATCTAACTGTCGAAACCAATTAAAGGTTGTGTGTAGATATTTTCTATCTATTTCCC-----------GGGGCCAACCGG-----TTTTCATT---CTACAA---TGttcgaaacattgaaaaata--gttcttttcttttttttcttttttctcaat---cacA--------------GTCAACTGT----TTTGTTTTGcgaagagaaaaatagattgagaaagagaaaga---gaaaaaagacacaattattatttttcattcgTTCACAAAATT---ATTCAAAGATATATACGGAGGATCAGTAGAAcacaaaat
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1917500 237 -  4500979 T--CTGTACCA--tttttttATCACGTATTT----TCAAAGAGG-------C-------TATCTAACTGTCGAAACCAATTAAA-GTTGTGTGGAGG-----------CAGTGCCC-----------CCGGTCGACCGG-----TTCTCATT---TTGCAA---TGTTCGACCCATCGGAAAGTA---------------------TTTCTCTCAAT---CGTA--------------GTCAATTgc----tat----------------------ttga----------------aaacaaaatataattactttttttcattcgttgacaaa------attcataaacatcgccttttttttttgaaaaaaccaaat
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     43974 243 -   141584 AAACTGTACCA--CTTTTTTATCACGTATAT----TCGAAGAGG-------C-------TATCTAACTGTCGAAACCAATTAAA-GTTGTGCGTAGG-----------CACAGTCCACAGTATCCAATCGGCCAAccggttttttcttcatt---ctgcAA---TGTTCGAAACACAGGAAAACA---------------------GTTC------T---CGCA--------------GTAAACAAAAaggttt----------------------tctgaataaaaaaaga---gaaaaaaggaagaa--gagatatTTTAT------TCAAG-TT---ATTTAGAATG-----------------GCAAAAtaagat
i caeSp111.Scaffold567  C 0 I 49
s caePb3.Scfld02_0       3324430 251 +  4147112 ---CCGTACCA---TTTTTTATCACGTATAG----TCGAAGCGG-------C-------TATCTAACTGTCGAAACCAATTAAA-GTTGTGCGTAGG-----------TATTGCCC-----CTCTCTTCGACCAACCGG----TTCTCCATT--ATTGCAA---TGTTCGAAACATTGGAAAACA---------------------GTTCTCTCAAT---CGCA--------------GTAAACAATCA--TTT----------------------TTAATATAGAAAacgatttggaaaaa------------atattttataggAGGATGAG-TT---ttcgagaaagagagagaatagTCGGAAGTAAAGtaagat
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   468838 249 +   591668 --actgtaccactcttttttatcacgtattt----ttGAATCCA-------CCGCAGTACACTTAACTGTCGGAACCAATTAAA-GTTGTGCGGACG-------------GCGCAC-----------CGCACCGACCGG-----TTTTGTTTGGATCGCAG---T----AAGACTGGGGAAAAAATCGTTcacaattctatttttttttcttccatttcgcGTC--------------GTTGACAGT----TAT----------------------TTACTTCA--------------------------------TTGTCATATACACCGGTA-TTTGTATTCGCATCAAAACAACATC-------AACGAAAAAAGT
i caeJap4.Scaffold17934 I 75 C 0

a score=900.000000
s ce10.chrX              5079688 5 + 17718866 ATAAA
s cb4.chrX              10407591 5 + 21540570 aaaaa
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1917740 5 -  4500979 ataaG
i caeRem4.Crem_Contig0  I 3 I 47
s caePb3.Scfld02_0       3324686 5 +  4147112 aaaat
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold17934   469087 5 +   591668 ATTAT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     44217 49 -   141584 I

a score=-9615.000000
s ce10.chrX              5079693 43 + 17718866 --------------------------TATTATGGTTACTTTTTTTTTTCTCAAAATATGTACTTCAAAT
s cb4.chrX              10407596 30 + 21540570 ------------------------------ttggaaattttcgagttgTGGAAAGATTGT---------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3324691 21 +  4147112 ----------------------------cattG---ATTATC---------AAAGTTGGTG--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   469092 47 +   591668 TGATAGGATggatttaaagaaaaatctataataaaaaatatc---------ataAT-------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     44217 49 -   141584 I
e caeRem4.Crem_Contig0   1917745 47 -  4500979 I

a score=38.000000
s ce10.chrX              5079736 1 + 17718866 A
s caeSp111.Scaffold567     44266 1 -   141584 G
i caeSp111.Scaffold567  I 49 C 0
s caeJap4.Scaffold17934   469139 1 +   591668 G
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3324712 0 +  4147112 C
e cb4.chrX              10407626 0 + 21540570 C
e caeRem4.Crem_Contig0   1917745 47 -  4500979 I

a score=161517.000000
s ce10.chrX              5079737 427 + 17718866  
s cb4.chrX              10407626 468 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1917792 457 -  4500979  
i caeRem4.Crem_Contig0  I 47 I 56
s caeSp111.Scaffold567     44267 418 -   141584  
i caeSp111.Scaffold567  C 0 I 361
s caePb3.Scfld02_0       3324712 465 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   469140 736 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              5080164 3 + 17718866 AAA
e caePb3.Scfld02_0       3325177 4 +  4147112 I
e caeJap4.Scaffold17934   469876 0 +   591668 C
e cb4.chrX              10408094 6 + 21540570 I
e caeSp111.Scaffold567     44685 361 -   141584 I
e caeRem4.Crem_Contig0   1918249 56 -  4500979 I

a score=75.000000
s ce10.chrX              5080167 3 + 17718866 AAT
s cb4.chrX              10408100 3 + 21540570 aat
i cb4.chrX              I 6 I 89
s caePb3.Scfld02_0       3325181 2 +  4147112 AA-
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   469876 3 +   591668 aat
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     44685 361 -   141584 I
e caeRem4.Crem_Contig0   1918249 56 -  4500979 I

a score=458.000000
s ce10.chrX              5080170 5 + 17718866 TAAGA
s caePb3.Scfld02_0       3325183 5 +  4147112 CAAGA
i caePb3.Scfld02_0      C 0 I 759
s caeJap4.Scaffold17934   469879 5 +   591668 taaat
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10408103 89 + 21540570 I
e caeSp111.Scaffold567     44685 361 -   141584 I
e caeRem4.Crem_Contig0   1918249 56 -  4500979 I

a score=455.000000
s ce10.chrX              5080175 5 + 17718866 TATTT
s caeJap4.Scaffold17934   469884 5 +   591668 tattt
i caeJap4.Scaffold17934 C 0 I 577
e caePb3.Scfld02_0       3325188 759 +  4147112 I
e cb4.chrX              10408103 89 + 21540570 I
e caeSp111.Scaffold567     44685 361 -   141584 I
e caeRem4.Crem_Contig0   1918249 56 -  4500979 I

a score=0.000000
s ce10.chrX              5080180 956 + 17718866  
e caePb3.Scfld02_0       3325188 759 +  4147112 I
e caeJap4.Scaffold17934   469889 577 +   591668 I
e cb4.chrX              10408103  89 + 21540570 I
e caeSp111.Scaffold567     44685 361 -   141584 I
e caeRem4.Crem_Contig0   1918249  56 -  4500979 I

a score=862.000000
s ce10.chrX              5081136 59 + 17718866 AGAAGTTACTCAAAACAAAAAAATTCAAA-TATATTTTTCACTTTTGAACTTTTGTGGCA
s caeSp111.Scaffold567     45046 60 -   141584 agATTTTGCTTCAAATGAACAGTTTCAAAGTACATGTTCTACTTCAAAatcattcacaaa
i caeSp111.Scaffold567  I 361 C 0
e caePb3.Scfld02_0       3325188 759 +  4147112 I
e caeJap4.Scaffold17934   469889 577 +   591668 I
e cb4.chrX              10408103 89 + 21540570 I
e caeRem4.Crem_Contig0   1918249 56 -  4500979 I

a score=212.000000
s ce10.chrX              5081195 21 + 17718866 AAAGAAGTTTCATTAATACTC
s caeRem4.Crem_Contig0   1918305 14 -  4500979 AGAGAACATTAAt-------a
i caeRem4.Crem_Contig0  I 56 C 0
s caeSp111.Scaffold567     45106 17 -   141584 aaaaaacattcattgA----A
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3325188 759 +  4147112 I
e caeJap4.Scaffold17934   469889 577 +   591668 I
e cb4.chrX              10408103 89 + 21540570 I

a score=1224.000000
s ce10.chrX              5081216 4 + 17718866 TAAT
s caeRem4.Crem_Contig0   1918319 4 -  4500979 taaa
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold567     45123 4 -   141584 TAAA
i caeSp111.Scaffold567  C 0 I 2
s caeJap4.Scaffold17934   470466 4 +   591668 TAAC
i caeJap4.Scaffold17934 I 577 C 0
e caePb3.Scfld02_0       3325188 759 +  4147112 I
e cb4.chrX              10408103 89 + 21540570 I

a score=-4564.000000
s ce10.chrX              5081220 7 + 17718866 ----AATATCT
s cb4.chrX              10408192 6 + 21540570 ----ATCTTC-
i cb4.chrX              I 89 C 0
s caeRem4.Crem_Contig0   1918330 6 -  4500979 ----aatagc-
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold567     45129 5 -   141584 ----CTCAT--
i caeSp111.Scaffold567  I 2 C 0
s caeJap4.Scaffold17934   470470 7 +   591668 ATCAATC----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3325188 759 +  4147112 I

a score=312294.000000
s ce10.chrX              5081227 386 + 17718866 TTACCTTTGTCATAATATTCTTGTCATAATAATACCGGAGTGCTCTGCTCAACTTATCGTAGTTCATATTCGGCTTACTGCAAA-TTCA----ATTAATGT---------TGAAAGTTCAAAG------CCCGCCGACAT------TCTCACCTCTTCCGCTCTCCCCATTTCCTGGCGACCTCGTCTGGGTCAACCAATTTGAACTCCCCGTTGCTACCTTCCCAAGCAATGCAGTGTGCATTGACGGCGTCAGCGAGAAGCTCCAACAAAAACTGCCACAGTTGAATTTGACCAGTCCCAGTTGCTGATAATGCAATCGCCATAGG---ACCTTTGG-ATGCACTCGTGCTG--TTGGATGATGGAATTCGTGAAAGAGCACTCGCGTATTGCATACATCCTGGAAATGTTGATTT
s cb4.chrX              10408198 394 + 21540570 TAACCTTAGTCATGATGTTCTTGTCATAATAATAACGGAGTGCTCTGCTCAATTTGTCGTAGTTCATATTTGGCTTACTGCAAAATACATT--ATTACATT---------ATGAACATCAAAGGCTTTTCCCGCCGCCACTT----TCTCACCTTTTCCGTTCACCCCATTTCCGGGCCACCTCGTCTGGATCGATCAATTTGAACTCTCCATTACTTCCCTCCCAAGTAATGCAAGTGGAATTAACGGCATCTGCAAGAAGTTCCAACAGAAACTGCCAAAGCTGAATTTGACCAGTTCCAGAGGCGCTCAACGCAATCGCCATTGG---CCCTTTGG-ATTG-----GTTGACAGCGGCTGCTGGGATCCGCGAGAAAGCGCTGGCATACTGCATGCATCCTGGAAATGTTGATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1918336 395 -  4500979 tTACCTTGGTCATAATGTTCTTGTCATAATAATAACGAAGTGCCCTACTCAACTTATCGTAGTTCATATTCGGTTTACTGAAAAGCGAATCAAATTAAATT---------ATAAACATCAAAG------TCAACCG-CGTTC----TCTCACCTTTTCCGTTCACCCCATTTCCGGGCCACCTCGTCTGGGTCCACCAATTTGAACTCTCCGTTGCTTCCTTCCCAGGCGATGCAATGTGCATTGACTGCGTCAGCCAGAAGCTCCAATAGAAACTGCCACAGTTGTATTTGTCCAGTTCCAGTTGCTGAGAAGGCGATTGCCATAGG---TCCTTTAGTAATGCCGGAGTTAGAATTGGCTGATGGGATCCGAGAAAGAGCACTAGCATATTGCATGCATCCTGGAAATGTTGATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     45134 395 -   141584 TTACCTTGGTCATGATGTTTTTGTCGTAATAATAACGAAGTGCTCTGCTGAGCTTGTCATAGTTCATGTTTGGTTTACTGCAAAATTCA----ATTAGTGC---------TTAAAGGTCAAAGG-----GATGCCGACACTTTA--TCTCACCTTTTCCGTTCTCCCCACTTCCGGGCAACCTCGTCTGGGTCCACCAATTTGAACTCTCCGTTACTGCCTTCCCATGAAATGCAATGGGCATTAACGGCATCGGCGAGCAGCTCCAAAAGAAATTGCCACAGTTGAATTTGTCCAGTTCCAGACGCTGAAAACGCAATTGCCATAGGACCACCTTTGG-ATGCACTCGGGTGG--TTGGCTGTCGGGATCCGAGAAAGAGCACTGGCGTATTGCATACATCCTGGAAATgttgattt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3325947 387 +  4147112 TTACCTTTGTCATGATGTTCTTGTCATAATAATAACGAAGTGCTCTGCTTAACTTGTCATAATTCATGTTTGGTTTGCTGTAAAATTCA----ATTAG----------------AGATCAAAGA-----CATACCGACATGTCAATTCTCACCTTTTCCGTTCACCCCATTTCCGGGCTACTTCGTCTGGGTCCACCAGTTTGAACTCCCCATTACTGCCCTCCCATGCAATGCAGTGTGCATTAACAGCATCAGCCAAAAGCTCAAGAAGGAACTGCCAGAGTTGAATTTGTCCGGTTCCTGTGGCTGAAAATGCAATAGCCATTGG---GCCTTTAG-ATGCACTTGGATGA--TTGACTGATGGGATCCGAGTGAGAGCACTAGCATATTGCATACATCCTGGAAATGTTGATTT
i caePb3.Scfld02_0      I 759 C 0
s caeJap4.Scaffold17934   470477 394 +   591668 TTACCTTAGTCATAATGTTTTTGTCATAATAGTAACGAAGCGCCCTGCTCAATTTGTCATAGTTCATATTCGGCTTGCTGCAA--TTCA----ATTAGCATTTTCCTCCCATCAAAAGAAAAG------CCGACCCACAC------ACACACCTTTTCCGTTCTCCCCATTTCCTGGCGACTTCATCGGGGTCAACCAGCTTGAACTCTCCATTGCCGCCTTCCCAGGTGATGCAGTGCAAATTGATGGGCTCGCTGAGTAGCTCTAGAAGAAACTGCCACAGCTGAATCTGACCAGTTCCAGACTGTGAGAAGGCTATTGACATTGG---AATTTTCG-AGGCGACAGAGTTG--CCAGTTGGTGGGATCCGGGAAAGCGCACTAACATATTGCACGCATCCTGAAGTGtttgattt
i caeJap4.Scaffold17934 C 0 I 677

a score=11251.000000
s ce10.chrX              5081613 26 + 17718866 CAAGAAACAAATGAATTGTTTGTTTA
s cb4.chrX              10408592 20 + 21540570 CATGAAAGACAT------TTTGTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1918731 26 -  4500979 CAAGAAACACATTTATTGTTTGttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     45529 26 -   141584 cagaagaaaaattcatattttgtttA
i caeSp111.Scaffold567  C 0 I 191
s caePb3.Scfld02_0       3326334 26 +  4147112 CAGGAAACACATTCATACTTTGTTta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I

a score=-165.000000
s ce10.chrX              5081639 14 + 17718866 CGAATGAGGGAGA-G
s cb4.chrX              10408612 13 + 21540570 -GATTTGAAGAGAG-
i cb4.chrX              C 0 I 2045
s caeRem4.Crem_Contig0   1918757 12 -  4500979 -gatttgaaaaag--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3326360 12 +  4147112 -gattgaagaaaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I
e caeSp111.Scaffold567     45555 191 -   141584 I

a score=847.000000
s ce10.chrX              5081653 45 + 17718866 GGTGTTGTTCAATTGTATGAATTATGTGGGATTCAAGTTAAATAA
s caeRem4.Crem_Contig0   1918769 32 -  4500979 -------------tgtatATATCATGTGAAAGAAAGAGTGAATAA
i caeRem4.Crem_Contig0  C 0 I 211
s caePb3.Scfld02_0       3326372 21 +  4147112 -------------tttataTATCATGTGAGAGGC-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I
e cb4.chrX              10408625 2045 + 21540570 I
e caeSp111.Scaffold567     45555 191 -   141584 I

a score=-3914.000000
s ce10.chrX              5081698 802 + 17718866  
s caePb3.Scfld02_0       3326393 612 +  4147112  
i caePb3.Scfld02_0      C 0 I 98
e caeJap4.Scaffold17934   470871 677 +   591668 I
e cb4.chrX              10408625 2045 + 21540570 I
e caeSp111.Scaffold567     45555 191 -   141584 I
e caeRem4.Crem_Contig0   1918801 211 -  4500979 I

a score=0.000000
s ce10.chrX              5082500 91 + 17718866 TCACATTTTCGAAAATTTTAAAATTCAATCATGACAGTATTAATAATTGTCGATCGGTATAAATTGGAGTTTGCCAAAACATAAAATGTTT
e caePb3.Scfld02_0       3327005 98 +  4147112 I
e caeJap4.Scaffold17934   470871 677 +   591668 I
e cb4.chrX              10408625 2045 + 21540570 I
e caeSp111.Scaffold567     45555 191 -   141584 I
e caeRem4.Crem_Contig0   1918801 211 -  4500979 I

a score=-458.000000
s ce10.chrX              5082591 47 + 17718866 TCTATTAAAAAAAAATCATAATGCCAACAATTGCTAAACACCTAAAT
s caePb3.Scfld02_0       3327103 29 +  4147112 ttttttgaaaa------atgttgcaaac------------TCCATTC
i caePb3.Scfld02_0      I 98 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I
e cb4.chrX              10408625 2045 + 21540570 I
e caeSp111.Scaffold567     45555 191 -   141584 I
e caeRem4.Crem_Contig0   1918801 211 -  4500979 I

a score=11.000000
s ce10.chrX              5082638 6 + 17718866 AGCTAA
s cb4.chrX              10410670 6 + 21540570 AACTTA
i cb4.chrX              I 2045 I 1
s caePb3.Scfld02_0       3327132 6 +  4147112 TGGTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I
e caeSp111.Scaffold567     45555 191 -   141584 I
e caeRem4.Crem_Contig0   1918801 211 -  4500979 I

a score=1489.000000
s ce10.chrX              5082644 27 + 17718866 AAATTCTTTTTTGGAAG----------------TTTTTAACAA
s cb4.chrX              10410677 40 + 21540570 CACTATTCTCTAGTGAGCAAGTTTCaacgtcatttttttc---
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1919012 24 -  4500979 AACTACTTTCTAGGAAG----------------TTTCTTC---
i caeRem4.Crem_Contig0  I 211 C 0
s caePb3.Scfld02_0       3327138 24 +  4147112 CACTTCATTCTAGGAAG----------------TTTCTTG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I
e caeSp111.Scaffold567     45555 191 -   141584 I

a score=-2091.000000
s ce10.chrX              5082671 45 + 17718866 AATTCGAAGACCATTTCTACTACCTTCT----------------TTATTCTCTATT-CTTTT
s cb4.chrX              10410717 36 + 21540570 aaact-------attctCCCTTCCTTTC----------------TTTACCTAAAGT---CAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1919036 40 -  4500979 AATCCAAAGAtaatttttccttcttctc----------------tttcatt---tc---tGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     45746 39 -   141584 AATTCAAAGACTAttctccgttt-tctc----------------ttcttccatatt------
i caeSp111.Scaffold567  I 191 C 0
s caePb3.Scfld02_0       3327162 61 +  4147112 AATTCAAAGACTAGTTTTCATTC-TCTCCATCTCattcatcccatttttccacatttcatAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   470871 677 +   591668 I

a score=98674.000000
s ce10.chrX              5082716 157 + 17718866 CGCGTTTTGTTCCCATTTTCTAAGAAAATCTGTGCTTTCGGCAAATA--ACCTGGGTTGTTCATAAAGACACCCA----GCATGACTGC--TCTATTCGAGCATGCTTCAATAGACGTCTCACACATCATTTAGCATT------TTTCAGACATTTGCCATAACTCT---GTGA-----
s cb4.chrX              10410753 153 + 21540570 TGCTTTTTGTTCGCGAATTCTAAGAAAACCTGTGCTTTGCGAAGGAAACACAAGAGCTATCCAAAAGGTA----TGCACACATAACTGC--TCTATTCGAGCATGCTTCAATAGACGTCTCACACATCATTTAGCAAT------CCTGAGACATTTCT------TGG---GTGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1919076 161 -  4500979 TGCTTTTTGTTCGCGATTTCTATGAAAACCTGTGCTTTTGGAAGGTA--ACAagagttttccaaaaagaaacgCGGAGCGCATAACTGC--TCTATTTGAGCATGCTTCAATAGACGTCTCACACATCATTTGGCAAT------CCTGAGACATTTGTCATGACTTG---GTAA-----
i caeRem4.Crem_Contig0  C 0 I 66
s caeSp111.Scaffold567     45785 156 -   141584 --ctttttgttcacaACTTCTATGGCAACCTG----TTTGGAAGGTA--AC-AAAGTTGTCCAAAAAGACACGAGGAGCGCATAACTGCTCTCTATTCGAGCATGCTTCAATAGACGTCTCACACATCATTTGGCAAT------CCTTAGAAGTATGTAGCGAATTG---CAGA-----
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3327223 159 +  4147112 TGCTTTTTGTTCCCAATTTCTATGAAAACCTGTGCTTTCGGCAGGTA--ACAAAAGTCGTCTAAAAAGACACGAGAAAAGCATAACTGC-------TCGAGCATGCTTCAATAGACGTCTCACACATCATTTGGCAAT------CCTGAGACATTTGTCATGACTTGGCCCAGA-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   471548 148 +   591668 CACGTTTTGTTCAGAATTTCTATGAAAACCTGCGCGTGCGGCAGGTA--ACAAGA------------------------GCATAACTGC--TCCATTTAAGCATGCCTCAATGCTTGTCTTACACATCATCTAGCATTTCTACATCTTAGACACTTGCTTAGACCTA---CCTACATAC
i caeJap4.Scaffold17934 I 677 C 0

a score=-10069.000000
s ce10.chrX              5082873 22 + 17718866 ---------------------CTGTGGTCTTG-----AGTATTGGCGA-
s cb4.chrX              10410906 19 + 21540570 ---------------------CTTGGGTCCCC-----AACGTTGA----
i cb4.chrX              C 0 I 33
s caeSp111.Scaffold567     45943 27 -   141584 ---------------------CCGAAATTCTCAACacaaacttgaaaa-
i caeSp111.Scaffold567  I 2 I 1
s caePb3.Scfld02_0       3327384 17 +  4147112 ---------------------CCGAAA----------GAATTTTATAA-
i caePb3.Scfld02_0      I 2 I 1
s caeJap4.Scaffold17934   471696 49 +   591668 CTACACCTACAGCAAGAAATGTCGGGTTCTACCGAATGAGTGGGAGGAA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1919237 66 -  4500979 I

a score=43315.000000
s ce10.chrX              5082895 229 + 17718866 ACGTATCGTGGTGG-------------GTTATTAAGGTTTACA----------AAAATCTTA------AGGAAA--------------------------AAAAGAA---AATATATTAGCTTAGAAAATGGGAGATAATTGA-------GAATTAACATATGCTAATATA--AAAGAGCA----------------TTTTTCTGCTCAT-CAACTGACCGTCGGCTAGCCGTGTGGTGTCCGGATTGTTA---GCAAGTGGAGTATCCCATTGTGTCGAGGAAGTTGTTTGACATACATTGTTGTAGTTGTCTGA
s cb4.chrX              10410958 228 + 21540570 ----------------------------gtGTAAGATGGAAC--------------ATTGTA------AAGGAA-----------AA-----ATCTAGATAACAGCGA-TCATAAATATCGTTGGGCGGCAAAAAGGAGTCAAC-----TGCATTAGCATTTGTTAATAGA--AAAGGGTG-----AAAGGAAAC--------TATTCATCAAACTGACCATCGGTTAGGCGAGCCGTGTCTTGTCCATTG---GACAGGGAAGTATCCCACTGAGCTGAAGGAGCTGGCTGGCACACATTGTTGTagttatctga
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   1919303 242 -  4500979 ----------------------------gcccaaaattaatt--------------gaatta------aGAGAACATAAGGTTCGAA-----ATCTGGACAAAAAAG--TCGTAAATTAACTgaggaaaggaaaaagagaaaa--------catttGCATGTGTTAATAGA--AAAGacca-----aaaaagaacaagattCATGTTCAT-GAACTGACCATCGGTTAGCCGAGATGTGTCCGGATTGTTG---GTGAGTGGAGTATCCCATTGTGTTGAAGACGCCGGCTGACACACGTTGTTGTAGTTGTCTGG
i caeRem4.Crem_Contig0  I 66 C 0
s caeSp111.Scaffold567     45971 256 -   141584 aa----ttcggtaA-------------ATTAAAAAGCTTGAC--------------ATTTTAGACTCGATGAAAAGCGTTGATGAAA-----AAGTAGATAAAAGAAC-TCATAAATTATCCTGGtgaaaggaggagaaaagaa-----agaatttgCATTtgttaatagaaaaaagaaca-----caagGGAAC-------ATGCTC---AAACTGACCATCGGTTATCCTGCTTGCGTCTGGATTGTTG---GCAAGAGGAGTGTCCCATTGAGTTGATGCACCAGTCTGACAGACGCTATTGTAACTGTCTGG
i caeSp111.Scaffold567  I 1 C 0
s caePb3.Scfld02_0       3327402 224 +  4147112 GATGATTTCGGT----------------TCACCATGTTCTac---------------tttta---tagaaaaaaagagaagatgtga-----aaatagataagagacc-tcataaatcaagac-gtgaaagaaaaagacaaga--------aatTTGCATGCGTTAATAGA----------------------------------------AAACTGACCATCGGTTAGCCTGCTCGAATCAGGATTGGTG---GCAAGAGGAGTGTCCCATTGAGTTGATGAACCCGTTTGACATACATTGTTGTAATTATCTGA
i caePb3.Scfld02_0      I 1 I 110
s caeJap4.Scaffold17934   471745 287 +   591668 GCGAATCGAattgaaacgaaacgaaacgcaacGAAACTAAACACGACATACATAGGAAATTA------AAGGGTaaaaaagacggaaacaagaaagaaacgagagacagtaataaatcagaaagacagaagaaggagaagaagaagaagagcatTTGCATGTGttaataga--aaataaaacctCCCGACAGAGC--------------T-TTACTAACCATCAGTTATCC------TTTCGGGATTGGTAGCCGCAAGAGAAGTGTCCCATTGGGTGGAAGAAGCTGTCTGACAAACATTATTGTAGCTGTCTGG
i caeJap4.Scaffold17934 C 0 C 0

a score=1820.000000
s ce10.chrX              5083124 2 + 17718866 AA
s cb4.chrX              10411186 2 + 21540570 aa
i cb4.chrX              C 0 I 166
s caeRem4.Crem_Contig0   1919545 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold567     46227 2 -   141584 AA
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   472032 2 +   591668 AA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3327626 110 +  4147112 I

a score=-3661.000000
s ce10.chrX              5083126 19 + 17718866 --GAAGCTAGTATTTTAT---------TAA
s caeRem4.Crem_Contig0   1919564 26 -  4500979 ----GAACATAGTTTCGATATCCTTTTTTA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold567     46229 15 -   141584 ------ACATTATTAAGA---------TTA
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   472034 21 +   591668 ATTAAGTTCTTAGTTAAT---------TAA
i caeJap4.Scaffold17934 C 0 I 639
e caePb3.Scfld02_0       3327626 110 +  4147112 I
e cb4.chrX              10411188 166 + 21540570 I

a score=-3785.000000
s ce10.chrX              5083145 56 + 17718866 TTACAGA-ACTACCCTAAG------TTATAATTTGGTAAACATTAAC--------CAT--ATTTATCAAT------------CGT
s caeRem4.Crem_Contig0   1919590 67 -  4500979 TTACAGGCGTTTTTCTAAACAGAAACTAAAATCTAAggaa-acgaaattttttggaat--ttttaccATT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46244 72 -   141584 TTGGAaatatgatttcaaa-atagtttgcatttttgttga-atgaaa--------aatcattttaccATTGTAAataatttc---
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3327626 110 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I
e cb4.chrX              10411188 166 + 21540570 I

a score=-4305.000000
s ce10.chrX              5083201 78 + 17718866 ------------TGAAATTGGATAAAGAATATTTTGGAAATCTCTCAGCTCAT---CCGAAAC---AGAGTACAT-----AGTGAATTTAAAA------CTCCAAGC
s caeRem4.Crem_Contig0   1919657 93 -  4500979 TGGAATAAAATCAGGAATATCATAGTAAACCTCACGGCTATCATGATAATAATAATCCGGTGTCATAGAGTACATCGTAATTTGTATTACTCG--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46316 84 -   141584 ------------tggaatttcgtAAGAAATATCTTG---ATATTCATCTTCATATATTGAAGCTTGAGAATACAT-----ATTGTTATAATAGAGTTGACTGAA---
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3327736 78 +  4147112 ------------TGGGATCTCGTAATACGCGTGATC---ATATTTATGGTCATAATTAGAAATATGTGAGTACAT-----GTTTTGATGATAG------CTAGA---
i caePb3.Scfld02_0      I 110 C 0
e caeJap4.Scaffold17934   472055 639 +   591668 I
e cb4.chrX              10411188 166 + 21540570 I

a score=24520.000000
s ce10.chrX              5083279 159 + 17718866 TAACTGGCGGAATAGGATAAATGGAGAGT--TTAGAGAAGCATGTATTT-TCTCATTTTCAACTC--CTATCCGCTGGAAATTGGTCAATTTCCTCTTGGCACCGTATACCGGGTAACCATG-GAGAGCGGCGGTCTAGGTGATAA--------CGGAT-GAAAACCAAATGTT
s cb4.chrX              10411354 159 + 21540570 GAATGGAAAGAATAGGGTAATGGGCGGAC--T------GGTATATGCTAATATCATTATCAATGC-TAGATCCA-TGGAAATTGTTTAATTTCC---TGGAGGTAATGTTCGAAAAGTCATGTGAGGGCACCGG--AAGGAGACAAAGGATGAgctgacaaaaaattgaatgtg
i cb4.chrX              I 166 C 0
s caeRem4.Crem_Contig0   1919750 156 -  4500979 TGATGGACAGAACAAAATGATAGGTGGGC--TCGAGAGGATGTGTACTTCTCTCATTATCTCCCCACCTATCCGCTGGAAATTGGTTAATTTCC---TGGCCGTGAAATTTGGATAGCCATG-GAAAGCACAGG--AAGGGGACAA---------TGAT-AAGAACCAAATGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46400 134 -   141584 CGACTAGTGGAATATTATGATAGAATGGG--TTATGGGGCGGTGTACTTCTACCATTAGCG-----------CACTGGAAATTGCCTAATTTCC---TGGCGGTTAAAACGGAACCGCCCTG-AAGAGCACCGG--AACGAGACAA---------GCAG-ATA-----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3327814 156 +  4147112 CGATTGACAGAATA--AAAACAAGATGGGGAGTGTTTGACGGTGTACCTCTCCCATTAACAGCCCACCTATTTACTGGAAATTGGCTAATTTCC---TGGCGGTAATAGCGGAACCACTATG-GGGAGCACCGG--AAGGAGACAA---------TGAT-AAAAACCCAATGCT
i caePb3.Scfld02_0      C 0 I 1122
e caeJap4.Scaffold17934   472055 639 +   591668 I

a score=-12801.000000
s ce10.chrX              5083438 106 + 17718866 -----TTTAGTTTATCATTCAAAATGTTAGTTTTGAAGATTGAAGAATTATGATTTCAAATGAATCGCGTGGGCAGAGGTCGTGAAAACACCGAGAAATTTTGAAGAGGGC
s cb4.chrX              10411513  73 + 21540570 -----tTCTGTTTGATAAGGGATGCAAGGATGGGGGTGAGCCAG---------------------------GTGAGA------AAAAATactttagtttttcaaagtgGGC
i cb4.chrX              C 0 I 93
s caeRem4.Crem_Contig0   1919906  84 -  4500979 -----TTCAGTTTGGCAGAAGTT----TAGTTGAGCTGAGCCAGCA--------Tccattttgatc-tacaggGAGAG---TCAAAAATGCGTGGGC------AACTGTGC
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold567     46534  50 -   141584 GGCGGTTCGATTGGATAAGCGAC--------------------------------------------CAccgttaga------aaaaaagaatttgg------aAG-----
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3327970 1122 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I

a score=-6161.000000
s ce10.chrX              5083544 151 + 17718866 GTTGTGATCCTCACAATCGTGTTATAGAACACAAAAATAAGATAAGAAAAAACATTATTAAACTTGAGCGATAGTTTCGAAA-ATATTGGTTTCCAAACTGTAAAATCGGATATTAAAAATCTGCGCGAATTTACAGTTTTTTTTTTTCAAT
s caeRem4.Crem_Contig0   1920000 119 -  4500979 --CTTGGT-ATCGaaattaaagaagaaaaagcggATCTGGTTTGAT----AACATTCT-----------GAAAACCTCGAAACATCTTGGT----AAACAATAgca----atacaaaaaatcattgtagaa--ataccaattttttt-----
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     46584  84 -   141584 ---------CTCACAA---------AAAACGCGGA----------------------------------GGCGTCTCCAAAACATTTT--------AATTATCGGA----AT---gaaaatctgagaaaaacTGTACTCCTGCTTTTGAAA-
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3327970 1122 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I
e cb4.chrX              10411586  93 + 21540570 I

a score=-49805.000000
s ce10.chrX              5083695 409 + 17718866 ----ATTACATAGTTTATCAGAGGTGTTTCGTGCGATTCGAACAACTGTAATTATACTGAA------TGCTGATTTTTAAGGGACATCACGATCGCAATTTGTTTC--CA--TTGTTAAAAATTGTGATTATAAAAAATGTTTCCAAACGTTCAGATTTCAAAAAATGAAAAAGGTGATACTAATAATACACAATGT-CTGCTGAAGAAAATAATACCCACAATACAGGGAATTCAAAAATAAAAAGAAAAATACTGAATCCCTTTATAGATGCACGTCTCTAAATTTTGTTATTGAAATGCATTTTAGAACAAATAAATGTTCACGTCAGTCTAAATTGGATATGTACTATTGCAACAGAAATTTGGTAACAGAAATTCAAATTTTAGACGCTATTCGACACCATTTGAATTCATTAACAAAT
s cb4.chrX              10411679 253 + 21540570 ----CTCGCATGTTTTCCTAGAGAAGCATCG-------AAATAAATTTCAA----GCTGAAACAAGCTGGcagttttta--------------------ttatttcttcgacttattgaaaaatagaa--ataga---tATTTTA------T------------------AAAGATCGTCG---------ACAATAT-CGACTTTGAA----ATTACTAAAATTC-----------------TAATGAAGTAATAtg----------tcaaaaattataattcgTACGTTCTACTG---TCTTCCTCAAAACAGATG----TCTTTGCCATTTC------------------TGTcatagaaaactgaaaattaaaa---aaa------acg--------------------------------
i cb4.chrX              I 93 C 0
s caeRem4.Crem_Contig0   1920119 168 -  4500979 ----------------------ggaggat----------aagaaat--------------------------gtttttt--------------------tggtttc--caaaTTATTGAGAATTCTAA--ATAGAAGCTATCTAA----ATT------------------AAATATCATC------------------TTGCTTAGTG----AGTAC---------------------------ATCAAGTTTTCTG----------TAGGATAATACAA--------GTTTATTG---TTTCCTGTACA------------CTTTGGTAGCTC--------------------------ACAATTGGGGTACATAA---AAA-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46668 284 -   141584 GGTATTTGCTTTTTGTTCTATCGCACGTT----------AGCCGACTGTaa---tattgaaactttttggcCGTCTTGA--------------------gggattt--gaaaaaaatgaga--tgtgT--ATAAAATCAATCTCG----Gtttgtat---------tgaaaaagaagattg--------aaCAATTTACAGTTTTGTA------TACCCAAATCA-----GATATAGAAAGGTGACGAAATATTACAGATTTTTTATGAGGATGTTTTATTTGGTTTATGCTATTG---TGACCC-CAAGTTACTTGAGTCTCTGTGCCATTTAA--------------CTTTGTCTCAAGTAGCTATTAAAC---------------------------------------------------
i caeSp111.Scaffold567  C 0 I 52
e caePb3.Scfld02_0       3327970 1122 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I

a score=-1328.000000
s ce10.chrX              5084104 37 + 17718866 AAATTGACTTTCTAGTTGGCGCTGTTTATCACACTTT
s cb4.chrX              10411932 19 + 21540570 --------tttcagaTTGAGA----------GATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1920287 19 -  4500979 --------TGGCCAATCGACG----------TTCTCT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3327970 1122 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I
e caeSp111.Scaffold567     46952 52 -   141584 I

a score=-3467.000000
s ce10.chrX              5084141 18 + 17718866 -TTATAAACAGTTTTTCGC----
s cb4.chrX              10411951 20 + 21540570 TGAGAGACTAGATTCCtatc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1920306 20 -  4500979 CGTTAGACTTGATAGCTCGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47004 22 -   141584 -ttgcAAATAGTTTTCCAAACTC
i caeSp111.Scaffold567  I 52 I 3
e caePb3.Scfld02_0       3327970 1122 +  4147112 I
e caeJap4.Scaffold17934   472055 639 +   591668 I

a score=-4071.000000
s ce10.chrX              5084159 8 + 17718866 --GAATAAAC
s cb4.chrX              10411971 1 + 21540570 c---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1920326 6 -  4500979 CACTA----C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47029 8 -   141584 --CAACATGC
i caeSp111.Scaffold567  I 3 C 0
s caePb3.Scfld02_0       3329092 8 +  4147112 --aaaaaagc
i caePb3.Scfld02_0      I 1122 C 0
e caeJap4.Scaffold17934   472055 639 +   591668 I

a score=162778.000000
s ce10.chrX              5084167 200 + 17718866 AAACAAAAAC--------AAAATGGC----AACGAAAAAA-GAATCGCTAGTGTTTCCGGAGATC--GACTTCGGAAGAACTGAGGCTCCATCCATGGGGGC---GCA-TGCGGCCAGGAAATAAGGTGCGGGAGCGCCTGTTTCCGTTCCTTTGTGCTCGTACCCT---AGGCGG--CCCATCTAAATGCAT--CCTAACAATAATCACATCCTGTCA--------GACGACG
s cb4.chrX              10411972 207 + 21540570 ---tagaaaa--------aaaacacgcgATATGAAGAAAA-GAATCGCTAGTGTTTCCGGAGATCTTGACTTCGGAAGAACTGAGGCTCTAT-----AAAACTTGGCATCGAGGCAAGGAAATAAGGTGCGGAAGCGCCTGTTTCCGTTCCTTTGTGCTCGTACCCCCAAAGACGC-------C-AAATGCAT--CCTAACAATAATCACATCCTGTCAGCCAAAACGACGTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1920332 198 -  4500979 TAATATAAGG--------AAAAAATG----GTGTAAAAAA-GAATCGTTAGTGTTTCCGGAGATC--GACTTCGGAGGAACTGAGGCTCTAT------AAGCTAGGCA-CGAAGCCAGGAAATAAGGTGCGGAAGCGCCTGTTTCCGTTCCTTTGTGCTCGTACCCT---AGGCGCTGCCTCAC-AAATGCAT--CCTAACAATAATCACATCCTGTCA--------GACGTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47037 195 -   141584 TAGTgggaat--------a-aaaatg----aggagaaaaaagaatcgtTAGTGTTTCCG--GATC--GACTTCAGAGGAACTGAGGCTTTAT------AAGCCTGGCA-CGCGGTCAGGAAATAAGGTGCGGAAGCGCCTGTTTCCGTTCCTTTGTGCTCGTACCCT---AGAGGG--TCCTTCTAAATGCAT--CCTAACAATAATCACATCCTGTCA--------GAGTTGG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3329100 193 +  4147112 caatggatat--------aggaaatg----aaacgaaaaa--aatcgttaGTGTTTCCG--GATC--GACTTCAGAGGAACTGAGGCTCCAT------AAGCCTGGCA-CGCGGCCAGGAAATAAGGTGCGGAAGCGCCTGTTTCCGTTCCTTTGTGCTCGTACCCT---AGGCGG--CCCCAC-AAATGCAT--CCTAACAATAATCACATCCTGTCA--------GACGCGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   472694 204 +   591668 aaaaaaaaactgctcgtaagaaaagg----aagagaaaaa-gaatCGTTAGTGTTTCCGGAGATC--GACTTCGGAGAAACTGAGGGTCTAT------AAGCCTGGCA-TGCGGCCAGGAAATAAGGTGCGGAAGCGCCTGTTTCCGTTCTTTTGTGCTCTTGTCGT---ACACGG--GCCA---AAATGCATCGCCTAACAATAATCACATCCTGTCA--------GCCAACG
i caeJap4.Scaffold17934 I 639 I 21

a score=7192.000000
s ce10.chrX              5084367 36 + 17718866 TGCCATAATAGATTTGCGCCGGCGCTATGGCTCGTC
s cb4.chrX              10412179 25 + 21540570 TGCCATAAAACACTTGGCA-----------GACTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1920530 26 -  4500979 TGCCATAATAGATTTGGGAC----------CGCTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47232 25 -   141584 TGCCATAATAGATGTGAGA-----------GACTCT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3329293 25 +  4147112 TGCCATAATAGATGTGGGA-----------CCCTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   472898 21 +   591668 I

a score=148314.000000
s ce10.chrX              5084403 673 + 17718866  
s cb4.chrX              10412204 623 + 21540570  
i cb4.chrX              C 0 I 173
s caeRem4.Crem_Contig0   1920556 629 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold567     47257 605 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3329318 633 +  4147112  
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17934   472919 707 +   591668  
i caeJap4.Scaffold17934 I 21 C 0

a score=-27696.000000
s ce10.chrX              5085076 106 + 17718866 TCTACTTTGTTTGATAATGGTAGATGGCTGGAATATAAAAACCATAAATCGACTCTACT-TCAGTTATCGGTTTGTCTGTCAAACTTTC----------GAAGT-----------GTTCAATCGGTTT-----
s caeRem4.Crem_Contig0   1921209  86 -  4500979 ACTACACTGTTTCATGAGAACTGA--ACTG--ATATGAAAAGT-----------------TCCGTATTG------CCAGAATCATATTG------AATTGCAGT---------CGGCTCTCCGACTCC-----
i caeRem4.Crem_Contig0  I 24 I 79
s caeSp111.Scaffold567     47862  67 -   141584 --------------------------------ATACGGCAATCGAA-------TATGAT-TTCGTCAA-------TCTGTATAGTTTTTCTT---GAGTGAGCT-----------GTTCCGAGACTCT-----
i caeSp111.Scaffold567  C 0 I 6
s caePb3.Scfld02_0       3329971  96 +  4147112 --TACACTGTTTCAGAGG---------CTG--ATGGGAAAATTCTG-------TTTGATATTCGTAACATTTTCttccgaataattttttctaccgaccaagat------------ttttgagagttt-----
i caePb3.Scfld02_0      I 20 I 6
s caeJap4.Scaffold17934   473626 109 +   591668 -GCATACAATTTTTGGGTGGTGAA--------GTACTAAAAGTA---------ATAAATGTCAATGATCGTtcgatttctatttttttt------aacctggttcataaaacacattttcaacATTAtcaatc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10412827 173 + 21540570 I

a score=-6232.000000
s ce10.chrX              5085182 37 + 17718866 TATC-----TTTTCCTTTTCGAAG----------TGCATCATGACCCTTTTT
s caeSp111.Scaffold567     47935 30 -   141584 tctcttttgtgATTCTCATCAGAA----------------------CTTAAA
i caeSp111.Scaffold567  I 6 I 10
s caePb3.Scfld02_0       3330073 31 +  4147112 TGAC-----TAATTCTTATATAAA----------------ATATTTCCTATC
i caePb3.Scfld02_0      I 6 I 19
s caeJap4.Scaffold17934   473735 40 +   591668 -------tattttttttgttgaaaaagaaCAGTCTGCAAAATGTTGT-----
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10412827 173 + 21540570 I
e caeRem4.Crem_Contig0   1921295 79 -  4500979 I

a score=-4864.000000
s ce10.chrX              5085219 24 + 17718866 TTTGTCCAAGCGTTTTAACACCTA-
s cb4.chrX              10413000 21 + 21540570 CTTACACAAAcatt---atgagaa-
i cb4.chrX              I 173 I 17
s caeSp111.Scaffold567     47975 21 -   141584 TATACAAAAATGTT---accaata-
i caeSp111.Scaffold567  I 10 I 1
s caePb3.Scfld02_0       3330123 21 +  4147112 CAAACATTGGCTTT---GTTTCTA-
i caePb3.Scfld02_0      I 19 I 38
s caeJap4.Scaffold17934   473775 17 +   591668 -TTTCATTA----T---ATGACTAA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1921295 79 -  4500979 I

a score=-801.000000
s ce10.chrX              5085243 14 + 17718866 TTAACACCAAAAAA
s cb4.chrX              10413038 14 + 21540570 TTCCAAccaataaa
i cb4.chrX              I 17 I 7
s caeSp111.Scaffold567     47997  2 -   141584 tt------------
i caeSp111.Scaffold567  I 1 C 0
s caeJap4.Scaffold17934   473792 14 +   591668 ctttgattaaaaaa
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3330144 38 +  4147112 I
e caeRem4.Crem_Contig0   1921295 79 -  4500979 I

a score=-18807.000000
s ce10.chrX              5085257 58 + 17718866 AACGAA-TTTCCACCA--GTTTT----------GTAAAAATACCAAGT-----TTTGTATTATT----AAGATTTCCGTT--------------------------------------
s cb4.chrX              10413059 65 + 21540570 agcGA--TTTACAACACTGATTTCGTTTCTCTCATAAAACAAGCTGCTA----TTCAGATTGTT----AAGATTT-------------------------------------------
i cb4.chrX              I 7 I 9
s caeSp111.Scaffold567     47999 54 -   141584 -------tttctgtcacagtttt---------cagaaaacattaagtt-----ttgaaaacgtt----AAAATTAATAT---------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3330182 63 +  4147112 AGAGATTTTCCTCCCAAGGTTTT-------TCCATATGCCGACAAA---------GGAGTCgttgttcaaagttttcat---------------------------------------
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold17934   473806 95 +   591668 ---------tatgAGACGACTTG---------CAAAAAACATGCAAcccaattttaattttatt----aaatCTCATAT-TACGTCATCAAAATTTGCTAAATAAAAACTAATGAATT
i caeJap4.Scaffold17934 C 0 I 2
e caeRem4.Crem_Contig0   1921295 79 -  4500979 I

a score=-79465.000000
s ce10.chrX              5085315 253 + 17718866 ----TTGATAGG------TTCTTGACAAAATTTGCCTAGT-------------------------ATAGATCGGGTAAAGTTCTGATGTTTAAGTAC----A-GAAAATAAAATCATTC-----GTGAT------AACAC----------------TTTT---GATAAGAAG-CGTCACAATTTATGAGGTTGTCAC-------TCTTGTTTTTTTAT-----------TAATTTAGTTAG-----------------TTTCTCGT-----GATTCTTAATATCTAGTTCAAAGACTGA-------------------------------------------------------GTACATATTTTTAGA---------------CAATTTGTTAATTTATT-----------------TTTCTCACTTA------------------AACAATCAAAAGTGCATAAAAT
s cb4.chrX              10413133 264 + 21540570 ----tgtgaaattaa---tttttctttagAATCTCATATTTT--GTTCA---TC----------AAT---TCGGTCAAAGTTCTGATGTTCAAGTGTATCAA-TG---CGGAGTCATAC-----ATGAT------AAAAAACTA-------TTTGTTTCC---GATAAGACGCTTCTTCAATTTATGAGGTCGATGa--------ttg------ttat----------tttacttttttgg-----------------tttctcatttctcg---ttttattttccatt-------------------------------------------------------------------gcttatttgTGGA----------------AACTTAatgttttatt----------------gttttgtAAATGTTTGCc------------acagcaaaaaaaagttttattc
i cb4.chrX              I 9 I 11
s caeRem4.Crem_Contig0   1921374 260 -  4500979 ----TGGACAATTA------CTTATCAAAAGTCAACTAC--------------------------AC---TTGGGCAAAGTTCTAATTTTCAAGTGC----A-TG---TGAAGAAAGCG-----TTTCT------GATAGACCG-------TGAG-TGCT---GATAAGaca-tatttcaatttctgagGTCGACGG--------TTAGTTTATTCAT----------TTTacgtttctagaaaattcgaGAGTGACACTTCACTTTGatcgaatttttatttttattt---------------------------------------------------------------------tcagtggtGGG---------------TAACCTAAC-------------------------TTTTATACAGATGAGAC------------CGAACTTATAACTATTCAAtcc
i caeRem4.Crem_Contig0  I 79 I 11
s caeSp111.Scaffold567     48053 228 -   141584 ------------------TCCTCTTCAAAACATTATGAA--------------------------ACCTGATGGGCAAAGTTCTGATGTTCAGGTGC----A-CGTATCGGAGTCATTC-----TCGAT------AAAAG----------------TACTCCCGATAAGA-ACTCACTCGATTTACGAGGTTGACCaac----tttctgttttattaTA---TTGTTCTTCactcttttca-----------------gttttcaatt-tgaaatgttttttctcagt----------------------------------------------------------------------------gta------------------atttcaattatt---------------------tttca------------------------gttaaagATAACTCTatagaac
i caeSp111.Scaffold567  C 0 I 181
s caePb3.Scfld02_0       3330245 239 +  4147112 ------------------tctttgtCCA------------------------------------------GCAGGCAAAGTTCTGATGTTCAAGTGC----AGTGCGACAAAGTCATTC-----TTGGTTATTCCACAAT----------------TACT---GATAAGGCGTCCGCTCAATTTACGATGTTGATGACA----CTTTAGTTTGCTGAT----tcatgatttatttttttga-----------------gt-----------gaaaattttgtttcacta-------------------------------------------------------------------GTTTATTAATA------------------TTTTTAATAGTC---------------------tttcacattcatttttcctcgaTCGACTCGATACCGAAAAACCTTAAaagc
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17934   473903 427 +   591668 TTATTGGATGGTTTATATTTGTTGCCTAACACCCtttttttGTAGTTCAAGGTCCTGGATGAAAAGTTTCGCGGGCAAAGTTCTGATGTTCAAGTGT----A-GGAAATAAAATCATTCCATTGTCGGC------CGCGGACTacgcttttttcattttt---gataagAAA------TAAGTTATGTGGTCAGCAACATGAttttctacccttttacgatttccatcttttctctttcga-----------------gttttagttttttacaattttttttcaacgtttcaaGTTGAAAATTACTAGATTTGAAAAACAAACTATCGTCTAATGTAAATTAAAATCtccgttatttttatttttgttttgttttttcttttctattatATTCTTTTCCTCTTCCGCCAAGGTCGTGTTTCTTATCTTCTAACCCCTGTACA----TTCACTCACAGAGATGAAAAT-
i caeJap4.Scaffold17934 I 2 C 0

a score=54299.000000
s ce10.chrX              5085568 143 + 17718866 TTCATACA------------------------------AACAA---TAAAAA--------------GTTTGCCGCCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGG-CTTGTTGTACAT-------CTATTTC-GTTCTTTGTTATGTGTCGCG------AGAAAC-GCA
s cb4.chrX              10413408 185 + 21540570 -TTATACATCTCTCGCAATCCTGAtatatctttg----aaaaaataaaaaaa---------aaagaatttgccGCCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCCATGTTAACCTTAAGGGCGCTGCGTG-ATGACAAGCCAACCATAAAC------TGCGAcgagg
i cb4.chrX              I 11 I 9
s caeRem4.Crem_Contig0   1921645 146 -  4500979 -ttgctca------------------------------aaaaagtgtaaaaa-------------tatTTGCCGCCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGG-CACGTCAACTCT-------CTATTCA-GTATTCGTTTATCTATCGCG------TGCGAC-AAA
i caeRem4.Crem_Contig0  I 11 I 9
s caePb3.Scfld02_0       3330492 182 +  4147112 ttcataga---------------aaagatttttgaaaaaaaaaatgaaaaaaggaagaacaaaaatatttgccGCCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGGCCACATTTTCCGT-------CTACTTG-ATTCTCAGTTATCTACTGCCAACTATTTCAAT-AGA
i caePb3.Scfld02_0      I 8 I 7
s caeJap4.Scaffold17934   474330 144 +   591668 -------------------------------------TAGacatcgcaaaaa-------------aatttgccgcCAGCAGGGGTCGAACCTGCGACCTTGGGCTTATTAGACCCACGCTCTAACCGACTGAGCTATGGCGG-CACATGGGTCAC-------CAACTTCTGTTTGTATTTATCAACTAGG---CATAGAAAt-tta
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     48281 181 -   141584 I

a score=1918.000000
s ce10.chrX              5085711 33 + 17718866 AA-GACGAAAGGAAA---AGAGAAAAGGCGATAGGAG
s cb4.chrX              10413602 29 + 21540570 -agagcgagaagaatcaaagagg-------tcgggag
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1921800 26 -  4500979 -A-AGTGAGTGGAAT--GAGAAA-------ACGGAGG
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold567     48462 26 -   141584 AA-AGTGGAAAGAGC---GAAGA-------Agtagag
i caeSp111.Scaffold567  I 181 C 0
s caePb3.Scfld02_0       3330681 26 +  4147112 GA-AACGAAAGAAAC---GGAGA-------actgaag
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   474474 33 +   591668 ga-aaagaaagaaaa---cgagAGAACGAAACGGGGG
i caeJap4.Scaffold17934 C 0 I 3783

a score=12983.000000
s ce10.chrX              5085744 112 + 17718866 A-----GAGAAAAGTAGGCTGTGGTCGCATGT---------------GTTTCTGCCACTGGAGG---------------------GGGCAAAAGAA-ATGGC-AGAGCCA-ATTTCAAC-AACAAAA--------TGGCA----TACGCCCTTAGTTCTCCAATTTTCA
s cb4.chrX              10413631 141 + 21540570 a-----gagagcgagagaaaGTGGTTGTGTGTTGTCTCCTTCGCTTAACTATTCTGTCTgaagagagagtaagagagaaaagagaggagaaaaaag-aaaacggaagCCGAATTGCAACAAACTGAAT-------TGGTA----TGCTCTT-----------ATTTTCA
i cb4.chrX              C 0 I 116
s caeRem4.Crem_Contig0   1921826  99 -  4500979 ATTGGCGAGAGAGAAATGCGGCCGTCGTATG-----------------------TGTCTGGAGA----------------------GACGAAAGAA-AAAACGGGAGCCT-TTTGCAAC-AACAAAAT-------TGGTa----cactttc-----------attttca
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold567     48488 107 -   141584 a-----gaaaacgaaacggCGTTATCGCATGT----------------GTTGTCCTACTGGAGa---------------------gggggaaaaaagaaaatgagagccA-ATTGCAAC-AACACAAA-------TGGCACACGCACACTC-----------ATTTTTA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3330707 115 +  4147112 a-----gagaaaaattttctgtggTCGCGTGT----------GTGTGGGTCGTCCGCCTCCGGA---------------------GGggcaaagaa-aaaacgaaagctA-ACTgcaac-aacagaaaaaaattttggca----cacactt-----------attttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I

a score=-21905.000000
s ce10.chrX              5085856 145 + 17718866 CCTCGCTTTCCTTTTTTTGACATTGTTTT------------------------------------GATTCATGTCGCA---------------TTCTTACC------------------------CAATTAGAAAAAAATCGATTTTG------------GAAAGTGTTTTCTGATC---GGTTATTAT--------CTATTTTCAACGCAATAGTTTACATTC-------------AGCAAATCCTTTAAACAAT
s caeRem4.Crem_Contig0   1921937 188 -  4500979 ---------------ttttaaaagaaatttgaaagtttctttGGTGATctctgtttatttttgaaactatagACTGAG--------------GTTTTCATCAGTATCATTTTTGATCAATAATACAAATGGGAAAAAGGTTATATCCGTTAGTTCTGGTCGGGTGTGTTTGATAAGAAATAACAATTAA---------TATGTCA-----------GGTTGATT-------------------TCTTCcgaacaac
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold567     48595 120 -   141584 AGTCAACTTCCTTGTTTTT-AATGGTATTT-----------------------------------GATAAGTACCAcg-------------tgcttttttc-------------------------------------------ttta-----------cgaaactgttttctcattca-aacaGATAC--------TTATTTTA-----------TTATGTTC-------------AACCACTTCTTTGATCAAT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3330822 184 +  4147112 gtgcaacttcctcattttcgaatgaaatttgataactACCTC-----------------------ACCACGTGCTTTGTCTAAcccaaaactgtttttctcacaGTCATCTT--------------------------GTTATGTTCA-----------GGCATGTCTTTGATCAATAA-GACTGTTGCGAAAAATGTTATATCC-----------CTTTGTTCGGGTTGTGAGTGTATGTAGGTGTCTGATAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10413772 116 + 21540570 I

a score=-37653.000000
s ce10.chrX              5086001 141 + 17718866 AA--------------------------TTGTTGA-------TATTTCTTGTTGTATCTTAAAATATGCATCAAAAATAAACTG-CTGGAAAAA--------------------------TTTCAAATTAT--------------CAAATTATTGTTATTAATTTCATTCTCAGGAAAATTAAAGTTAAATTTTTTTA---------GTTGTTATGTTTTTTGT-------------
s cb4.chrX              10413888 152 + 21540570 -----------aaaaagtgatatct---ctttttc-------tattc--tgGT-CATCTTTGATAAGATAGACATAACATGT---CAGGTCCGA--------------------------TTTTCCATCTT--------------CCGAAAACT----T--ATGACTAACACCACAATA------TT--GTATTTTCATTTAGAGAAACTGCCGCCGTGTTTGTTTCTTAA----TT
i cb4.chrX              I 116 C 0
s caeRem4.Crem_Contig0   1922125 132 -  4500979 ----------------------------ttttttcgtggAAACATTC---------TTTTTGATACTATTTATAAATAGCAC---CAAG-aaga--------------------------tttcatatttt--------------aatgatACT----TTAGTGTTTATTG----AAAG------AT--CTTTTTTCAC--------ATCTCTGCGTTTCTTATTTCTCCACTTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     48715 203 -   141584 AAAACTGACGCGAAAAACGATATATCCGTTTGTTC-------TAGTTGAGAGTGTATGTGTGAGAGTGTGATAAGAtttcttttccgaaaaaaaacttatttaGGTGAAATCATATGCATTTCTAAATCTTTTGATTAAGAAAACTCTAGGATT----TCAATTACATTTCCCATGAAACtgcaact--cttttttcat--------atttttc---tttctttttc----------
i caeSp111.Scaffold567  C 0 I 7
s caePb3.Scfld02_0       3331006 155 +  4147112 AATCTTCTTccgaaaaac----------ttatttt-------tggaCACAAGT-CAtatggatttttgttttcaaatctcgTTAACAAAAGAAA--------------------------CTCCAGGTTTT-------------CACaaagtct----tcatttttttttcccacaaaactcatttt--cttatttca---------atgtttcatttttctctttc----------
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold17934   474507 3783 +   591668 I

a score=-23271.000000
s ce10.chrX              5086142  86 + 17718866 ---------------------------------------------------ATTGTCACCAAATGTATC----------ATATCTTGCACTCT----TTCAAAA----------CAAAACAATAATT----TATCTTATGAAT-ATATGAATACGTAATATCTGTA---------
s cb4.chrX              10414040 134 + 21540570 ATTATT--------TTGTTC----------TCACAACGTCTCC------GTCTCTCACCC-----TCTCTTACTACTAATTATCTGACCTActccagaaaaaagagacttCTAGCAGCTCtcttttctccttctcttgTCCAT------------TACCACCCGTTATGAATGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1922257 124 -  4500979 ACTATTCAATAATATTATCCAAGCAATACGCCCCAACATCTGCACTTAAGCCTCTTCCCC-----TCTCCACCT-----TTGTTCCAAATACT---------------------CATCACAATTGTATACTTATCTG---TAT------------TTCAATCTGCT---AATG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     48925 104 -   141584 ---------------------------------------------------cttttcgct-----tttc------GTGATCATCTGACAAGTT----TGAAGAATTACATCATCCAGCTCAATTCCTTG--TATCTTCTTTATCGTAAGTA-ATATACGATTGCCTTCCAAGA--
i caeSp111.Scaffold567  I 7 C 0
e caePb3.Scfld02_0       3331161 115 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I

a score=60673.000000
s ce10.chrX              5086228 193 + 17718866 -----CACCA----------CGACCC---TAAAAACATCTGCAAAGA--CG---CTCATTAT---AAAGACGACCTCCTCTGTCTGCACTCTCCACTGAGCGCACTCTCTCTATCATCATTTTCCATCTCTCTGAAGAAAAAATAAGAGAGTGTGGAGGGGGCTCACTTGTTTACCGGTGTGGTCAAACGTTT---GTTAGCAAAGTCAATTTCTTCTTTTT
s cb4.chrX              10414174 191 + 21540570 AATCACACAATTCCCTCTTTCTAGTTTTCTAAGAACACTAGCTGAGATGCG---CCTGGTAT-TATAAGACGTGCAATCATGTCTGCACACTCCATACAGAGCACACTCTCTCGTTTGG---------TGTCCTCAGGCGA------------------GGGCTCACTTGTTTACCGGTGTGGTCGAACGTTTCGCGAGTGTGAGGtcaatcttttttctct
i cb4.chrX              C 0 I 2268
s caeRem4.Crem_Contig0   1922381 165 -  4500979 --------------------CCACCTTTCTAAGAACGTCTGCGAAGA--CG---CTCGTCAT-AAAAAGACGACCTAGTATGTCTGTACTCTCCAATGAGCGCACCCTCTTTCTC-------------TGTCCTCAGAAGA---------------GGGGGGCTCACTTGTTTACCGGTGTGGTCGAACGTTT---GTTAGCGaggtcaatttttcatttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     49029 166 -   141584 -----CACCA----------ATAACCTCTCAAGAACGCCTGCGAAGA--CG---CTCGTCATAAAAAAGACGACCCCCTCTGTCTGCACTCTCTCCAGAGCGTATTCTCTCTGCCCT------------------TAGAAA---------------AGAGGGCTCACTTGTTTACCGGTGTAGTCGAACGTTT---GTCAACGAGgtcaaattttctttctt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3331276 174 +  4147112 -----CACCA----------TCACCCTC-CAAGAACGTCTGCCAAGA--CGACACCCATCAT-AAAGAGACGACCTACTCTGTCTGACCTCTCCAGTGGGTGCACTCTCTCTCCTCT-----------ATTTCGAAGAGAA---------------AGAGGGCTCAATTGTTTACCGGTGTGGTCGAACGTTT---GTTAGCGaggtcaattttttcttttc
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I

a score=546.000000
s ce10.chrX              5086421 1 + 17718866 T
s caeRem4.Crem_Contig0   1922546 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 1735
s caeSp111.Scaffold567     49195 1 -   141584 t
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3331450 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I

a score=-905.000000
s ce10.chrX              5086422 38 + 17718866 AAACACTCATAATTTGTCGGTACTTGTTTGTGTTGTTT----
s caeSp111.Scaffold567     49196 36 -   141584 -----tttct-actccCGTTGCTTTACGCATGTGTTTCcctt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3331451 33 +  4147112 -----tttctaactcgctacgatttttacgtgtttttt----
i caePb3.Scfld02_0      C 0 I 2446
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=83.000000
s ce10.chrX              5086460 96 + 17718866 TCAACAAGTTTCTTAATTTTTGTTAATA--AGTTTTATTAAAAGTGGAGTAGTATTCCCTGTTTTTTTTAAATCATAATTGATAGAAAACAATCACAA
s caeSp111.Scaffold567     49232 93 -   141584 gagaaaaagaaatagatttttagaaacatcaatttcaaagaaattgaattaatttt-----tgttttcacaaTAGTAACGATTAAAGAAATCTTACGA
i caeSp111.Scaffold567  C 0 I 52
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=0.000000
s ce10.chrX              5086556 20 + 17718866 TATACAAAATAAAACCATTA
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeSp111.Scaffold567     49325 52 -   141584 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=-1387.000000
s ce10.chrX              5086576 396 + 17718866 AAAAAATTGTAAA---------TAAAAAAACGAAATAAATGAAT-----------------ATTAGTATAACAGTCACTTCAAAAATTCAAAAATTACATTGCACAT-----ATTTGTTTTTTTTTCACATCAAAAT---------TTGAAACTCGCAAAACaattttaaaaaattatttatta------aattatttctcag-----taatattt----agccattttatt--taattttaatttttttaaaaCAA------AATTCTAGTTTACTTCAAACATTAACT-CATAAAATAAAC------------------CAAAACAATTTTAAATTCACATATAAGTATTTTTACTAAT-----CTTCTCGGTTTCTTCGACTTCAATTTACCCTA--TATTTGCTTCTGTTTTTGACTACATGTGTAATTCCTCAAAAGTTTTTTTTC------------CATTTCTCACTAGTCACCAT-TCTTTTTCTCTCAC
s caeSp111.Scaffold567     49377 479 -   141584 ACCAAATTGTTAacttagtttttgaaaaattaagtcAAATTCCTGCAAACTTCCACCTGCAATTGttctaaatatttctttgaaaacgtgAAATGCACTTCAtccttttctgattttcttttctttctcattaaaCTCCGGTTTCATTTACTCTCTc-------ctccaaaaattcattttctctctgctcattctttttcaagcAGATAATACCTCATAAGCCTTCTCGTCACCAGTCGCAATATTTCTCAAGTTATCCTatgattttgtttcttttctccctcTTACTGCATAGATTTGACAGCTGTGTGGGGAGTATACAAACGAGTTTTAAGGccgattgt---tttttcttccaatttctgCTCATCGGTTGCTCC----TCAAGTTATTTGAAATGTCTGTTCCACTCGTTTAGcat-----tagtttttcaaaagaaaatctgCAGGACAGATATACTTATGTCGTTATATGGCATGCCTTTCTCTATCGC
i caeSp111.Scaffold567  I 52 I 132
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=0.000000
s ce10.chrX              5086972 76 + 17718866 TTTTCAGGTCGGTCAGATGTACTTCGAGTAAAAGTTTCTGAGCGCATGTGTGTGTTTGTCATATAACTTTTTTTTC
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeSp111.Scaffold567     49856 132 -   141584 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=515.000000
s ce10.chrX              5087048 71 + 17718866 ATTTTCTCAGTGGGAATATATGACATTGTAAAGTTTTGCCGATTGCTGGAAACTTTGGCAATT-------TTCAAACA
s caeSp111.Scaffold567     49988 69 -   141584 GCTTTCTGAAtggaaa--------actg-aattttttgcaaatttgTGCAAAATGACGTGACTGTGTACGCTCAAACA
i caeSp111.Scaffold567  I 132 I 147
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=0.000000
s ce10.chrX              5087119 160 + 17718866 TCTCTAGATTTCCAAAATTTTAAACTTTAGCCTCGCCATAGTTTGCCACTTTAGTAATTTTTACTCATTTTCTTTTAAAAGCCTACGTATGCATTGATTTACGTTGATTTATACTGTAAAGTTATGTTTGAACAACAAAATCTACATATAAGAACTACAT
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeSp111.Scaffold567     50057 147 -   141584 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=-288.000000
s ce10.chrX              5087279 110 + 17718866 ATAAAAATATCAGTAGTTTTTTGGCGTAATTTGTGTTGGCGT----------------AATTTGTGTTGTACCTCCCGTGTCGTTTTTT-TCAACAATCGACTGACTTTTTTTCAACAATCGAACAG
s caeSp111.Scaffold567     50204 113 -   141584 ACAAAAATATCACCGCATTATTG-------TTGTCTCGGTTTGAAAGCTATCTACTAGAATTCGTACAAT----CtgatctcattttttgtttaataCCGACCT-CATTCTCTCGAAAATTG--CCA
i caeSp111.Scaffold567  I 147 C 0
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1922547 1735 -  4500979 I

a score=7654.000000
s ce10.chrX              5087389 110 + 17718866 ---TCAATGTCGCAATTCGCAATTCATATTAATCAGTTTTCAACATGAGACGGCTAGTTTTGAC---------ATTCTCACAT-----GACTTCCGCATATTGTTAATCAGAAACTATGTATGTTTC
s caeRem4.Crem_Contig0   1924282 113 -  4500979 ---TTAATGGCGTAATT-----GTCATATTAATCAATCTCAAACAACAATCTGCTTGTCAACACAAGATCACCTCCCTCACAT-----GACTTCCGCATATTGTTCAACAAAACCATCGtttcttc-
i caeRem4.Crem_Contig0  I 1735 C 0
s caeSp111.Scaffold567     50317 115 -   141584 CCCAAATTGATATTAAT-----GTCATGTTAATCAATCTCAGACAGCAATCTGCTTGTCAATAC-------TTTCCCTCACATGACTAGACTTCCACATATTTTTAAACGAAAATACACTATTTTTC
i caeSp111.Scaffold567  C 0 I 249
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I

a score=205.000000
s ce10.chrX              5087499 8 + 17718866 TAGATGTC
s caeRem4.Crem_Contig0   1924395 8 -  4500979 gaaatttc
i caeRem4.Crem_Contig0  C 0 I 334
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeSp111.Scaffold567     50432 249 -   141584 I

a score=0.000000
s ce10.chrX              5087507 217 + 17718866 ACATAAAACGCAGTTTATTTTTAATAGAAAAAACAGTACTTTATCAAACTATGAAACATATTCTATTTTTAGATTTTTAGAGATAAACTGAAAAATTGGAAAACCAAAAAAAAAATCTATCAGAAGAATTTCATTATTCTAATCTACTGAAAACATGTCAATTCAATAGATATAGACGGCTAGAGATAACTTTTTTAATTCTAAACATTTTCAATCA
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeSp111.Scaffold567     50432 249 -   141584 I
e caeRem4.Crem_Contig0   1924403 334 -  4500979 I

a score=-301.000000
s ce10.chrX              5087724 79 + 17718866 CATTGTACCAAAAAATTTCATTTCAATAAAACTTCTATTCGCGATTTTTTATTTCTATAAGTTTGGTTTAACAAAAAAC
s caeSp111.Scaffold567     50681 47 -   141584 CAATATATTGCAGAGTTCCATccca--------tcttttttgaattatttgtttt------------------------
i caeSp111.Scaffold567  I 249 C 0
e caePb3.Scfld02_0       3331484 2446 +  4147112 I
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e cb4.chrX              10414365 2268 + 21540570 I
e caeRem4.Crem_Contig0   1924403 334 -  4500979 I

a score=546.000000
s ce10.chrX              5087803 2 + 17718866 AT
s cb4.chrX              10416633 2 + 21540570 at
i cb4.chrX              I 2268 C 0
s caePb3.Scfld02_0       3333930 2 +  4147112 AT
i caePb3.Scfld02_0      I 2446 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I
e caeSp111.Scaffold567     50728 0 -   141584 C
e caeRem4.Crem_Contig0   1924403 334 -  4500979 I

a score=4132.000000
s ce10.chrX              5087805 16 + 17718866 TCCAGCCACCCGTCCA
s cb4.chrX              10416635 10 + 21540570 tccAGC------TTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1924737 16 -  4500979 TTCAGCGCTCCATTCT
i caeRem4.Crem_Contig0  I 334 C 0
s caeSp111.Scaffold567     50728 14 -   141584 --cagctctccatttg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3333932 16 +  4147112 TCCAGCTCGCCATTCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   474507 3783 +   591668 I

a score=116113.000000
s ce10.chrX              5087821 167 + 17718866 ACAATGGACATAGCTCAGCGAAAAATTGATTTTCACCGGCTTGTCCGAGATGCTCCGATGATAACTCATATCTGCTTCGATGCCTGTTCCAAAACCGTCAAAATCGTCTACTCGTCATCAGTACCGCTGTCACACACTACTCTAGAGTGTACAGTAAGTTTTGTTTT
s cb4.chrX              10416645 158 + 21540570 -CGATGGACACAGCTCAACGAAATATCGACTTCCACCGATTGGTCAGAGATGCGCCGTTAATCAATCACATCTGCTTTGATGCGTGCTCCAAGACAGTCAAGATCATCTACTCATCAACAGTGCCTCTTTCTCACACAACTTTGGATTGCAAGGTTAGT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1924753 160 -  4500979 GCGATGGAGGCTGCTCAACGCAAGATCGACTTTCGTCGCCTCGTCCGAGATGCACCGAACATCAACCATCTCTGCTTCGACGCATGCTCGAAGACTGTCAAAATTGTCTACTCGTCGAAGGTTCCGTTATCCCATACAACTCTGAAGTGCAAGGTGAGCT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50742 162 -   141584 aaaatggagacAGCTCAACGAAAAATCGACTTTCATCGCCTCGTTCGAGATGCGCCAATGATTAATCACATCTGTTTTGACGCATGTTCCAAGACTGTTAAAATAGTCTATTCTTCAACTGTACCTCTTGCCCATACTACACTTGATTGCACTGTAAGTTCA-----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3333948 163 +  4147112 ACAATGGACGGAGCTCAACGTAAGATCGATTTTCATCGGCTCGTTCGAGATGCGCCGAAGATCAACCACATTTGTTTTGATGCATGCTCGAAGACAGTCAAAATCGTCTACTCGTCAACCGTTCCACTTTCCCACACGACTCTTGATTGCACGGTAAGTTCAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   478290 167 +   591668 ACAATGGAGCCAGCGCCATGCAAAGTGGATCTCCACCGTCTCGTTCGAGATGCGCCCACAATTAATCATCTGTGCTTTGATTCGTGCTCCAAGACTATAAAAATCATTTACTCGTCGACCGTCCCAATACAGCATACCACACTAGAGTGCacggtttgttttttatt
i caeJap4.Scaffold17934 I 3783 I 2316

a score=-1562.000000
s ce10.chrX              5087988 38 + 17718866 TGAAATTTGTAACTTACTAAAATAAAATAAAAACAAAA
s caeSp111.Scaffold567     50904 15 -   141584 ----------------TTATAATGAGTACAA-------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334111 28 +  4147112 ----------GACAGCCgagaatggagaaaaaacgaag
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17934   478457 2316 +   591668 I
e cb4.chrX              10416803  0 + 21540570 C
e caeRem4.Crem_Contig0   1924913  0 -  4500979 C

a score=-19556.000000
s ce10.chrX              5088026 147 + 17718866 CTTGGGTGCGTGTATGCACATCTGCTAGAATTTAGACCCTAATAGTTGGGGGGACATTTTATGCAATCATCTGTGACCCCAACTGATATTAAGACCCGACATCTACTTGGGTCTGCGCCACGCCCTGAGGTTAACATCGTGCGGCGC
s cb4.chrX              10416803  14 + 21540570 -------------------------------------------------------------------------------------------------------------GGTATATTTCATTT------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1924913  63 -  4500979 ------------------------------------------------------CATTATA---------CTATTAGTTGAACTAATAG-----------ACTTAC-TGGATATGTTCTTTCTCTAGTGACTAAAATT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50919   8 -   141584 -----------------------------------------------------------------------TATGAA--------------------------------ga------------------------------------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3334139  12 +  4147112 I
e caeJap4.Scaffold17934   478457 2316 +   591668 I

a score=-861.000000
s ce10.chrX              5088173 42 + 17718866 TGAACCCGATCAGGTAAATTTCGGGCCTTCATAGCAGAAAAA
s caeRem4.Crem_Contig0   1924976 11 -  4500979 ---------TTTGGTTAATT----------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3334139 12 +  4147112 I
e caeJap4.Scaffold17934   478457 2316 +   591668 I
e cb4.chrX              10416817  0 + 21540570 C
e caeSp111.Scaffold567     50927  0 -   141584 C

a score=-17298.000000
s ce10.chrX              5088215 72 + 17718866 TAAATGTTTGTGAGATGAAAAAACATTTTGGGGTACAGGTAATACACGTTTACCTACCA----AACAATTGTTTCT
s cb4.chrX              10416817 22 + 21540570 -----------------------CAGT------------------------TTCTAACA----AAATGTCGAG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1924987 52 -  4500979 ----TGTTAATAAG----CAACACAGT---------ATCTTACACTCATTATCCTACCA----GTATGTTATG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50927  8 -   141584 -----------------------------------------------------------------atttcatg---
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   480773 50 +   591668 taaatccttgttagatttaaaaacaat---------------------tgaatataaaaatttaaattttg-----
i caeJap4.Scaffold17934 I 2316 C 0
e caePb3.Scfld02_0       3334139 12 +  4147112 I

a score=145506.000000
s ce10.chrX              5088287 202 + 17718866 TTTTTAGAGAATTCTTTCAAAGCAAAGTGAAGACAGAATATACTGCATTCAAGTTCAGTATCCCGATTTCCCGCTGATTCTGAATTTTTTCGGTGAAAAT-TGCCCATTGCTCAAAGGAACGACCGTCGATTTTGTAGTAACCGCCAGTCAAAATGCAGAAATCGAAGAAGTTATTCGGAAGGTTCTGGATGTGGAGTGAGTT
s cb4.chrX              10416839 201 + 21540570 -CTTCAGAGAGTGGACACAGAGAAATCAGAAGACCGAATCTACTGCATTCAAGTCCAGTATCCAGATTTTCCATTGATTCTACAGT-TCTTCGGTGACACGTGTCCACTTTTGAAGGGAACCACCGTTGATTTTGTTGTCACTGCTAGTCAAAATGCTGAAATCGAGGAGGTAATCAGAAAGGCGTTGGATGTCaagtaagat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1925039 201 -  4500979 TTTTCAGAGACTCAACTCTGGAAAAAGCGAAGAAAGAATCTATTGCATACAAGTTCAATATCCGGATTTCCCGTTGATCTTAAAATATCTTGGAGAACAC-TGCCCGAAAATCAAGGGAACTACCATCGATTTTGTGGTCACTGCTAGCCAAAATGCTGAAATCGAGGGAGAGATTAGCAAAGCTCTGGATGTCACGTGAGT-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     50935 202 -   141584 ttttcagagaatcagTTCAGGAGAAAGTGAAGATAGAATTTACTGTATCCAAGTGCAATATCCTGATTTTCCATTACTGTTAAAGTTTTTCGGAGAAAAC-TGTCCTCTTCTCAAAGGTACCACTGTTGACTTTGTAGTGACTGCTAGTCAGAATGcagaaattgaagaggaGATTCTAAAAGCATTGGATGTCACGtgagtc
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334151 202 +  4147112 ttttcagAGAGTCGACTCTGGAGAAAGTGAGGATAGAATCTATTGCATTCAAGTTCAGTATCCGGACTTTCCATTGCTGTTGAAGTTCTTTGGAGAGAAC-TGTCCACTTCTCAAAGGAACCACCGTTGACTTTGTGGTCACTGCTAGCCAGAATTCTGAAATAGAGGAGGAGATTCTGAAGGCGCTTGAtgtcaagtgagtt
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17934   480823 202 +   591668 ttttcagcgCATAAGCACAGGACAAAGCGAAGATAGAATATATTGCATTCAAGTAAAATACCCCGATTTCCCACTCATTCTCAAATTCTTTGGTTCAAAT-TGCCCTTTGCTCAAAGGAACTACAGTCGACTTTGTGGTTACGGCGAGTCAGAATTCGTACATCGAAGAAATGATTCGCAAAGAATTGGATGTCacgtatgtt
i caeJap4.Scaffold17934 C 0 C 0

a score=-2981.000000
s ce10.chrX              5088489  8 + 17718866 ---GTTATCGG----------
s caeSp111.Scaffold567     51137  3 -   141584 ---ttt---------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334353  8 +  4147112 ---tttatgcG----------
i caePb3.Scfld02_0      C 0 I 118
s caeJap4.Scaffold17934   481025 21 +   591668 ttttttttaaaccaaaatcca
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10417040  0 + 21540570 C
e caeRem4.Crem_Contig0   1925240  1 -  4500979 I

a score=-14285.000000
s ce10.chrX              5088497  59 + 17718866 GAAATTATA---ACGGTGCAAAA-----------TCTAGTTGATAAGTGTGACGTTTTAATTTTAAA-----------------------------GCTGTA
s caeRem4.Crem_Contig0   1925241  21 -  4500979 GGAAT-----------------------------------------AAATGGAATAGTCGtt----------------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold567     51140  15 -   141584 -----------------------------------------------ttttctgctctCATT----------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   481046 102 +   591668 aaaacaatattttctgTGGGAAAAAGCGTTATATTGCAATCAGAAATTATTGAGCTCCTAATTTAAATTATggcttaaattttttaatgggttacggttgca
i caeJap4.Scaffold17934 C 0 I 28
e caePb3.Scfld02_0       3334361 118 +  4147112 I
e cb4.chrX              10417040   0 + 21540570 C

a score=-255.000000
s ce10.chrX              5088556 12 + 17718866 ACTTTATACAAA
s caeRem4.Crem_Contig0   1925262  9 -  4500979 --tttttGTAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51155 10 -   141584 --CATATGTAAA
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3334361 118 +  4147112 I
e caeJap4.Scaffold17934   481148 28 +   591668 I
e cb4.chrX              10417040  0 + 21540570 C

a score=-6270.000000
s ce10.chrX              5088568 40 + 17718866 --------------AATTTTCTGGT--------------GAAGTTCTTTTTTTTATTGACTGATATCA
s caeRem4.Crem_Contig0   1925271 19 -  4500979 -----------------TATTGAAT-------------------TCTGA-------------AGGTAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold567     51165 27 -   141584 --------------CACTTTTGAAT--------------AATGCTCTGT-------------ATATCG
i caeSp111.Scaffold567  C 0 I 2
s caeJap4.Scaffold17934   481176 68 +   591668 AATTTACTGGTAGACGATGTTGGGTTTTCTAGGAcagaaaacgttttttttttggtttttttagaacg
i caeJap4.Scaffold17934 I 28 C 0
e caePb3.Scfld02_0       3334361 118 +  4147112 I
e cb4.chrX              10417040  0 + 21540570 C

a score=-19405.000000
s ce10.chrX              5088608  38 + 17718866 -TTTT----------TTTGTAAAAGC-------ACAATAAT----------------TGGAAAGAAAAAAAG------------------------------------------------------------
s cb4.chrX              10417040  13 + 21540570 -tttt----------tttgtgaat------------------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1925295  37 -  4500979 -TTTCACAGtataaatatgaaaat----------------------------------gataagaaacgAGG------------------------------------------------------------
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold567     51194  13 -   141584 -ACTC----------TTTGAAATG------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold567  I 2 I 2
s caeJap4.Scaffold17934   481244 122 +   591668 ttttt----------tttgtctaagCCTGAAAtacaattacaaaaaaaattcactaattgtaagaaaaaattaactattgttggcccgccaaaattgtcaaacacgctccgctgaactcaacgctatgcgat
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3334361 118 +  4147112 I

a score=1875.000000
s ce10.chrX              5088646 6 + 17718866 TTTCAT
s caeRem4.Crem_Contig0   1925332 6 -  4500979 TTTAGT
i caeRem4.Crem_Contig0  C 0 I 60
s caeSp111.Scaffold567     51209 6 -   141584 TTACGA
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3334479 6 +  4147112 TTTTGT
i caePb3.Scfld02_0      I 118 C 0
s caeJap4.Scaffold17934   481366 6 +   591668 tttcat
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10417053 0 + 21540570 C

a score=-39188.000000
s ce10.chrX              5088652 107 + 17718866 -TTGAAAACTAAATTTTTACTTGAT---TACAAACTTAATATGCATTTTCA---GTTTTCAAACTGGAAATTTGGATCTAACA----------------------------CAT-----------AAAAATAACTAAC--------------------AAATA-TTTTT-TTTAA
s cb4.chrX              10417053  31 + 21540570 ---------------------------------------tatACAT---------ATTTATTACTAAAAATGCG-------------------------------------------------------------------------------------------GTTAT-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     51215  74 -   141584 -------ATGAAATTCCAGCAAC------ACAAAACTTATTTGTAT--CAA---GATTTTCCATATATCATGAg---------------------------------------------------aacaataat-------------------------aata-atttc------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334485  56 +  4147112 -------CCAaaacttcaacttc-----ttctaaacttttatgcat----------ttttcaagtcatcttgtt-------------------------------------------------------------------------------------------tttc------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   481372 167 +   591668 tttggtctccaaaatatttcttttcacatataaattccacgtgaaa--tgaaataatttggaaaccaaaatgaaaacctcatagcgttgagttcagcggagcgcgtttgatcattttggcgggccgaaaataaataaatccacGCACTCAAAAAAGCGAAATATATTTC------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1925338  60 -  4500979 I

a score=318596.000000
s ce10.chrX              5088759 372 + 17718866 AGACTCCGACATGTTGATGCATTCAATGGACTTGTCAACGGAACCTCGTTCCTCCTTAGAAACATTGAAGCCGAATGCTTCACCTACTCATTTGATGAATCTCAAGAATACGAATTTCAAACGCTTAACAATGACTCAATGTTTCCATATCTTCTAATTAATATTCGAACAGGAGTGTCAGTTGTACTTGTTGAAGGTGAAAATCAATTCAAAAGACTAGGAGGAAGCTCGATTGGAGGCGGAAGTTTCTTGGGGCTCACCGAGCTCATCACAGGAGTTAGTGATATCGAGGAAATGATGGATCGTGCTCTACAAGGCAGTCCTGACGAGTTTGATATTTTCATCAGAGACATTTATGGAGATCGGTATGTT
s cb4.chrX              10417084 372 + 21540570 AGATTGCGTCACGTCGAAGCCTTCACAGGACTCGTCAATGGAACTTCATTCCTTCTGCGTAACATCGAAGCCGAGAGTTTCACCTACTCGTTCGATGAGTCTCAGAAGTACGAATTCCAAACGCTCAACACAGAATCCATGTATCCATATCTTCTCATCAACATTCGTACTGGAGTCTCCGTGGTGCTTGTCGACGGACCCAACAAGTTCCAAAGACTCGGAGGAAGCTCAATCGGAGGTGCCAGTTTCCTCGGTCTTTCGGAATTGATCACAGGTGTCAACGATATTGAAGAGATGATGGATCGTGCTCTCAAAGGAAGTCCAGAGGAGTTCGACATTTTCATCAGAGATATCTACGGAGATCGGTAAGCT
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   1925398 372 -  4500979 agtcttcGCCACGTGGACGCATTCAGTGGACTTGTCAAAGGTACCTGTTTCCTTCTCCGTAACATTGAAGCCGAAAGCTTCACCTATTCGTTCGATGAGAGTCAAAAGTACGAGTTCCAAACTCTCAACACCGAGTCGATGTACCCGTACCTCCTAATCAACATCCGTACTGGTGTGTCTGTTGTCTTGGTTGAGGGTGAGAACAACTTCAAGAGACTCGGAGGAAGCTCGATCGGAGGAGGATGCTTTTTGGGATTGACTGAGATTATCACGGGAGTTACCGATATTGAGGAGATGATGGAGCGTGCTCTCCAAGGAAATCCGGACGAGTTCGATATATTTATCAGAGATATCTATGGAGATCGGTatgtt
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold567     51289 372 -   141584 aggTTGCGTCATGTCGACGCTTTCAATGGACTGGTTTACGGAACATCTTTCCTTCTTCGCAATATTGAAGCTGAGAGCTTTACTTTCTCCTTCGACGAGTCACAGCAATATGAATTTCAAACTCTCAATACAGAATCTATGTATCCATATCTTCTTATCAACATTCGTACTGGAGTTTCTGTGGTTTTGGTTGAAGGAGAACGTCAATTCAAACGTCTCGGAGGAAGCTCAATCGGAGGTGGCAGCTTTCTGGGGCTTTCTGAAATCATAACAGGAGTCAGCGACATTGAGGAAATGATGGATCGTGCACTCCAAGGAAGTCCAGATGAATTTGATATATTTATCAGAGATATCTATGGAGACCGGtacgtt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334541 372 +  4147112 aggCTCCGCCATGTCGATGCGTTCAATGGCCTGGTCTATGGAACCTCGTTCCTTCTTCGCAACATTGAAGCTGAGAGTTTCACCTACTCATTCGACGAATCTCAACGATATGAATTCCAAACCCTCAACACTGAATCCATGTACCCATTCCTTCTTATCAACATTCGTACCGGAGTGTCTGTTGTCTTGGTTGAGGGTGAGAATCAGTTCAAAAGACTTGGAGGAAGTTCCATCGGTGGTGGAAGTTTCCTCGGACTTTCTGAGCTTATCACTGGAGTCACTGACATTGAGGAAATGATGGATCGTGCAATGCAAGGAAGTCCAGAGGAGTTTGACATATTCATCAGAGATATCTACGGAGATCGGTTggtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   481539 372 +   591668 AGGCTCCGCCACGTGGAAGCCTTTACTGGTCTTGTCAAAGGAACGTCTTTTCTGTTGCGAAATATTGAAGCTGAAAGCTTTACGTACTCGTTCGACGAGTCGCAGACATACGAGTTCCAAACGCTTCACAATGACTCGATATACCCCTATCTTCTTATAAACATTAGGACAGGAGTGTCAGTGGTTCTTGTCGAGGGAGAAAACAAGTACAAAAGGCTTGGTGGCAGCTCTATAGGTGGTGGAAGCTTTTTGGGGCTTTCCGAAATAATAACTGGCATCAGTGACATTGAAGAGATGATGGATCGTGCGCTCAAAGGAGTTCCAGAtgaatttgatatttttataaAAGATATCTATGGAGATCGGTTAGtt
i caeJap4.Scaffold17934 C 0 C 0

a score=-4207.000000
s ce10.chrX              5089131 10 + 17718866 TTTTTC-----AGAA
s caeRem4.Crem_Contig0   1925770  4 -  4500979 -----------ataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51661 15 -   141584 tttttatttgcaggt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334913 12 +  4147112 tct---cacaaaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   481911 10 +   591668 -----gattacaaaa
i caeJap4.Scaffold17934 C 0 I 58
e cb4.chrX              10417456 33 + 21540570 I

a score=-1258.000000
s ce10.chrX              5089141 13 + 17718866 TTTTTTGAAATAA---
s caeRem4.Crem_Contig0   1925774 12 -  4500979 ttttt----aaagagA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51676  9 -   141584 tttct----ataa---
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3334925  9 +  4147112 atgat----ataa---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I

a score=819.000000
s ce10.chrX              5089154 3 + 17718866 TTT
s caeSp111.Scaffold567     51685 3 -   141584 ttt
i caeSp111.Scaffold567  C 0 I 17
s caePb3.Scfld02_0       3334934 3 +  4147112 ttT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I
e caeRem4.Crem_Contig0   1925786 0 -  4500979 C

a score=320.000000
s ce10.chrX              5089157 6 + 17718866 GGGAGT
s caePb3.Scfld02_0       3334937 6 +  4147112 GAAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I
e caeSp111.Scaffold567     51688 17 -   141584 I
e caeRem4.Crem_Contig0   1925786 0 -  4500979 C

a score=0.000000
s ce10.chrX              5089163 533 + 17718866  
e caePb3.Scfld02_0       3334943   0 +  4147112 C
e caeJap4.Scaffold17934   481921  58 +   591668 I
e cb4.chrX              10417456  33 + 21540570 I
e caeSp111.Scaffold567     51688  17 -   141584 I
e caeRem4.Crem_Contig0   1925786   0 -  4500979 C

a score=558.000000
s ce10.chrX              5089696 16 + 17718866 TTTTCACGATAGAACT
s caeRem4.Crem_Contig0   1925786 16 -  4500979 TTTTAACAATAATGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3334943  0 +  4147112 C
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I
e caeSp111.Scaffold567     51688 17 -   141584 I

a score=465.000000
s ce10.chrX              5089712 4 + 17718866 TTTC
s caeRem4.Crem_Contig0   1925802 4 -  4500979 CTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51705 4 -   141584 TTTC
i caeSp111.Scaffold567  I 17 I 1
e caePb3.Scfld02_0       3334943 0 +  4147112 C
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I

a score=-930.000000
s ce10.chrX              5089716 14 + 17718866 TAACCACTCTGAAA
s caeRem4.Crem_Contig0   1925806 12 -  4500979 --TCGATACTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51710 11 -   141584 ---ATACATTCCAA
i caeSp111.Scaffold567  I 1 C 0
s caePb3.Scfld02_0       3334943 11 +  4147112 ---TAACCcctcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   481921 58 +   591668 I
e cb4.chrX              10417456 33 + 21540570 I

a score=187.000000
s ce10.chrX              5089730 1 + 17718866 G
s caeRem4.Crem_Contig0   1925818 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold567     51721 1 -   141584 A
i caeSp111.Scaffold567  C 0 I 3
s caePb3.Scfld02_0       3334954 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   481979 1 +   591668 g
i caeJap4.Scaffold17934 I 58 C 0
e cb4.chrX              10417456 33 + 21540570 I

a score=551229.000000
s ce10.chrX              5089731 785 + 17718866  
s cb4.chrX              10417489 777 + 21540570  
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   1925827 774 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold567     51725 777 -   141584  
i caeSp111.Scaffold567  I 3 C 0
s caePb3.Scfld02_0       3334958 730 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   481980 902 +   591668  
i caeJap4.Scaffold17934 C 0 I 634

a score=-14541.000000
s ce10.chrX              5090516 33 + 17718866 -------GAAAAGA--ATTTTGA--GCCGGTGCAAAATCAAA-----------TG
s cb4.chrX              10418266 38 + 21540570 TTCCTGTAAACTGA-ATCTATAA--ACTAATTATCAAT--------------TCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1926601 38 -  4500979 -------AGATTGGTAGTTAGAAGGAGTAGTCTTCAACAACG----------TAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     52502 34 -   141584 ATC----AGAATAT--TCCAAGC--AGCAATT--CAACAAAG-----------TT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3335688 46 +  4147112 -TC----AGTGTCG--CCTGGAA--ACGAATttccaaccaaaattttttttcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   482882 634 +   591668 I

a score=142684.000000
s ce10.chrX              5090549 169 + 17718866 TTTTCAGAGCATATGGAAATTCAAACGCGAGAAACATGCTAGAAGTTCGCGAACAAATCTTGCAGGAAAAAGGATTTGATGATATTTACGTGCAGAAGAAACACGCTGAAAACTGCACAGCAATTGCAGAATTGCCACGTGTTTTAGCAAAAATTGATGAGCTGAAGAA
s cb4.chrX              10418304 169 + 21540570 TATTTAGTGCTTACGGTAACTCAAACGCTAGAAATTTGCTCGAGGTCCGTGAACAAATTCTGCAGGAGAAAGGATTCGATGACATTTATGTGCAAAAGAAACACGAGGAGAATCTTTCTGCAGTTGCAGAGCTTCCAATTGTGCTCGCTTCGATTGACAAGCTTAAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1926639 169 -  4500979 TTTTCAGCGCATATGGAAACTCGAATGCCAGAAATCTGTTGGAAGTTCGTGAGCAGATCTTGCAAGAGAAGGGATTTGATGATATTTATGTGCAGAAGAAACACGAAGAGAACTGCACAGCAATTGCTGAACTCCCACATGTTCTTGCCACCATCGACAAGCTTAAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     52536 169 -   141584 ATTCCAGTGCCTACGGAAACTCAAATGCCCGAAATCTGCTAGAAGTACGAGAGCAAATTCTTCAAGAGAAAGGATTCGATGACATTTACGTTCAAAAGAAGCATGAAGAGAATTGCACAGCTATCGCTGAACTTCCACGAGTACTCGCTTTGATTGATGAACTGAAACA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3335734 169 +  4147112 ttttcagtgcataTGGAAACTCGAACGCCAGAAATCTCTTGGAAGTTCGTGAACAAATCCTTCAAGAAAAAGGATTCGATGACATATATGTGCAGAAAAAGCATGAAGAGAACTGTACGGCTATCGCTGAGCTTCCAAACGTTCTTGCAATCATCGACAAGCTGAAGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   483516 169 +   591668 ttttaagtGCCTATGGAAACTCAAACGCCAGAAACATGTTGGAGGTTCGCGAACAGATTCTTCAACAGAAGAAATTCGATGACATCTACGTTCaaaaaaaGCACGATGAAAACTGCACTGCTCTTGCTGAACTTCCAAGCATTCTCGCCATTATTGATAATCTGAAAGA
i caeJap4.Scaffold17934 I 634 C 0

a score=91.000000
s ce10.chrX              5090718 1 + 17718866 T
s caeJap4.Scaffold17934   483685 1 +   591668 T
i caeJap4.Scaffold17934 C 0 I 10
e caePb3.Scfld02_0       3335903 0 +  4147112 C
e cb4.chrX              10418473 0 + 21540570 C
e caeSp111.Scaffold567     52705 0 -   141584 C
e caeRem4.Crem_Contig0   1926808 0 -  4500979 C

a score=-15384.000000
s ce10.chrX              5090719 135 + 17718866 GTGAGTCATTATAATTTGCATTGAAATTTCGTATTTTCAAATTCCCTATGACTTTGGTAACTTTCACGAAAATATGACACATGCAGTTTAAAACATCGAAAAAACGTTATTTTCCATAACTTTGCGGGAAATTAA-
s cb4.chrX              10418473   9 + 21540570 -------------------------------------------------------GGTGAATGC------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1926808  39 -  4500979 -------------------------------------------------------GGTGACCGT---------ATAACACAAA--------------------------------ATAGTTTATTATGAAACTAA-
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold567     52705  14 -   141584 --------------------------------------------------------------------------------------------------------------------------GGTatcaaaattac
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3335903   0 +  4147112 C
e caeJap4.Scaffold17934   483686  10 +   591668 I

a score=-973.000000
s ce10.chrX              5090854 20 + 17718866 AAAGAACGGTTCAGTTAATT
s cb4.chrX              10418482  9 + 21540570 ------CAGTTGATT-----
i cb4.chrX              C 0 I 27
s caeSp111.Scaffold567     52719 12 -   141584 aaaaaacacTTC--------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3335903  0 +  4147112 C
e caeJap4.Scaffold17934   483686 10 +   591668 I
e caeRem4.Crem_Contig0   1926847 10 -  4500979 I

a score=-2194.000000
s ce10.chrX              5090874 104 + 17718866 GTTTTTTTTTACCTTAAGAAGCATTGAATTTTTCAAAAGCTTCACTAAACACGGCTCGTATGACATCATGTTAGTGAAACATTACTAGTAACTATTTTGTGTAA
s caeSp111.Scaffold567     52731  23 -   141584 ----------------------------------------CTCATTAA----------TAT----TCATTTCAGCGA---------------------------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3335903   0 +  4147112 C
e caeJap4.Scaffold17934   483686  10 +   591668 I
e cb4.chrX              10418491  27 + 21540570 I
e caeRem4.Crem_Contig0   1926847  10 -  4500979 I

a score=0.000000
s ce10.chrX              5090978 32 + 17718866 TAGTAATAGAAAAAAACACGTTAGTATTTTCA
e caePb3.Scfld02_0       3335903  0 +  4147112 C
e caeJap4.Scaffold17934   483686 10 +   591668 I
e cb4.chrX              10418491 27 + 21540570 I
e caeSp111.Scaffold567     52754  0 -   141584 C
e caeRem4.Crem_Contig0   1926847 10 -  4500979 I

a score=2066.000000
s ce10.chrX              5091010 8 + 17718866 GACTGGAG
s cb4.chrX              10418518 8 + 21540570 ggcAGGGG
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1926857 8 -  4500979 GACTAGTG
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     52754 4 -   141584 ----GGCG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3335903 8 +  4147112 GACCAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   483686 10 +   591668 I

a score=475255.000000
s ce10.chrX              5091018 630 + 17718866  
s cb4.chrX              10418526 631 + 21540570  
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   1926865 630 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 79
s caeSp111.Scaffold567     52758 637 -   141584  
i caeSp111.Scaffold567  C 0 I 32
s caePb3.Scfld02_0       3335911 633 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   483696 626 +   591668  
i caeJap4.Scaffold17934 I 10 C 0

a score=347.000000
s ce10.chrX              5091648 19 + 17718866 GGCTATTGAAATTCAGAGA
s caeJap4.Scaffold17934   484322 15 +   591668 ----ATTAGGATTAATAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3336544  0 +  4147112 C
e cb4.chrX              10419157 24 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=-14816.000000
s ce10.chrX              5091667 79 + 17718866 CGTTAATG-----------------------------AGTTTT------ATTATTTTGAATTAACA-------ACCTTTTTTTTTCATTCAGAAAAGTTTATGAA------GCACTGCAATTCATTG----
s cb4.chrX              10419181 93 + 21540570 --TGAATCATATACAAAATATGTAAATATTGGCTGAAAGTTCT-------TGATTATCGACtaaaaaagatcaaatttcttt-------------------tgaa------gtgttgaaaaaaattg----
i cb4.chrX              I 24 I 278
s caePb3.Scfld02_0       3336544 19 +  4147112 -------------------------------------agttt-------------------------------agttttttt---------------------------------------aaatc-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   484337 83 +   591668 -----------------------------TATCACGGAgtgttggccggaacgttggaaacTAAAATTGCGCaagctttttt-------------------caaaaaatgtgtgtttcaatcaacttgcga
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=-5688.000000
s ce10.chrX              5091746 89 + 17718866 TTTAAACTCATATCTAAATCGTTTTCCATCATTTTTTTGAAAGTTTTCTCAAAAACTAGCACGAGAGTGACCCAAACATTTTTTTAAAT
s caePb3.Scfld02_0       3336563 27 +  4147112 --tagATT---------ATCGTGTTCCAG---------------------------------------------------TTAGTATCt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   484420 54 +   591668 -----------cttgaaaacgcaagtcaattctgcattcaccgttctgtccgcgtc------------------------tcttcaaat
i caeJap4.Scaffold17934 C 0 I 48
e cb4.chrX              10419274 278 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=178.000000
s ce10.chrX              5091835 76 + 17718866 TTaatttttctgttgcaccgagacccatttgaatgaatcctcgggcccttaataaaccttgccaaaatctagtgaa
s caePb3.Scfld02_0       3336590 61 +  4147112 gtgatttttgt---------------agttgagtAATTTTCCAGTAACCTGataactatgaaaaataaCCTGTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   484474 48 +   591668 I
e cb4.chrX              10419274 278 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=623.000000
s ce10.chrX              5091911 12 + 17718866 gttatgataTCA
s caePb3.Scfld02_0       3336651 12 +  4147112 TCTATTTTCTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   484522 12 +   591668 gttcttatgtcg
i caeJap4.Scaffold17934 I 48 C 0
e cb4.chrX              10419274 278 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=-395.000000
s ce10.chrX              5091923 91 + 17718866 CTAGAGTTCACGTTTGGACTGTCAATTAAAAAAAAGTCATTTGAATAAAACTCCG-------TCAAAGTGAA-ATAAGAAAAAGCCGTACTCAAGCCGC
s caeJap4.Scaffold17934   484534 79 +   591668 caa-----------------gtcgattgaaaacacaatagctgcATAAACGCTCGGCTGCCTTTAAAACGAATACGAACAGGAGACGAA---AAGAAGC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3336663  0 +  4147112 C
e cb4.chrX              10419274 278 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=-1612.000000
s ce10.chrX              5092014 22 + 17718866 TGAATGC-TACATTTTGG-----------------------------------TGTTT
s cb4.chrX              10419552 57 + 21540570 TGAAAGC-TAAATTTTGTGTGCTGTCAGCGACACGCGTTGCGGCTTCAGACATTGTTC
i cb4.chrX              I 278 I 23
s caeJap4.Scaffold17934   484613 23 +   591668 AGAGTGCATGAATTTTGTTT---------------------------------TGT--
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3336663  0 +  4147112 C
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=-25112.000000
s ce10.chrX              5092036 122 + 17718866 TGAAATTTATAAGTACTT-------ATTGAAT------------------------------TGTAGTTTTAAAAAAAT--TATTGTTTTGCTTTTTAAAATTTATTTCCTCATAAGCAAATG-------------------------------ATTGTATCAAACGGGTGTTTCAAGATTTAAAGTAGAAG
s cb4.chrX              10419632 157 + 21540570 GGAAACTTTtgtcaaatc-------aaaaaata---------atactgCTACC---------TGTAAATCTGAGAGTGGCCGGTTGATTTGA--TCTAGAAGGCAGAGCGGCAAAAACTGAATCACTTAGATTCTTGCTTAGTTCGTATGATTTTTCGTATTaaa--gttttttccaaa---aaaataa---
i cb4.chrX              I 23 I 7
s caePb3.Scfld02_0       3336663  38 +  4147112 TGAAATCTatcagaaatc-------aagaaat-------------------------------------------------gGCTGA-------------------------------------------------------------------TTCTTAT-------------------------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   484636 127 +   591668 GGAAACCTGCCTCCGACTATCCCCGAAGAGACggagacaagcagcctcccacctcagcggagcgcattgccaataacg---ttctgGCCAGCTCACCGTGACATATGTCTTCTAAGTTTgta--------------------------------attctatt------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     53395  32 -   141584 I
e caeRem4.Crem_Contig0   1927495  79 -  4500979 I

a score=0.000000
s ce10.chrX              5092158 3 + 17718866 TTA
e caePb3.Scfld02_0       3336701 3 +  4147112 I
e caeJap4.Scaffold17934   484763 0 +   591668 C
e cb4.chrX              10419789 7 + 21540570 I
e caeSp111.Scaffold567     53395 32 -   141584 I
e caeRem4.Crem_Contig0   1927495 79 -  4500979 I

a score=48198.000000
s ce10.chrX              5092161 203 + 17718866 TTTTCAGGCCGCTGTAATTAAAACCCAATGGCTTGCGGATCGTCTTGGAGGAAAAATGTTCAGTGTTGTATTCAAACACGAACATGGAGTGAGTGTGACAAACT-------AATATCCCATGTGTCAT--TCTCA------ACAAACGGTGATATATTCAAGAGCGTGTGATTCGTGATTCT--------------TAACT---CTTTC-TCATATCG-----ACAA------CTCTT-----------------TCAATTTTC
s cb4.chrX              10419796 207 + 21540570 TTTCCAGGCTGCCGTCATCAAAACCCAATGGCTTGCTGACCGTCTTAAAGGGAAGATGTTCAGTGTGGTATTTAAACACGAGCATGG---------AACAAAG--------------TAGGA---CAC--GCCTACCTCATCTCATCAGAGATA--CTCGAA---------TGGGTGATTTTTATTCGAAATGTTGTGATTAAACACTA-TTATATCACTTTCTCACATGCCatcttt-----------------ttaactttt
i cb4.chrX              I 7 I 102
s caeRem4.Crem_Contig0   1927574 194 -  4500979 tttacAGGCAGCTGTCATCAAGACTCAATGGCTTGCTGATCGTCTCGgtggaaaaatgttcagtgTTGTATTCAAACACGAGCTCGGTGTGCA-ACAATAAATA-------TATTTCCAAAA---CAT--GCCAA---------AACAGTGATA--CCTAAA-ACGTGT-TTTAGTGATTTC--------------TGATT---TGCTC-CCATATCACT---TCAC------TTTGT-----------------CCAACATTT
i caeRem4.Crem_Contig0  I 79 C 0
s caeSp111.Scaffold567     53427 190 -   141584 TTTTTAGGCTGCCGTTATCAAAACTCAATGGTTGGCTGATCGTCTCGGgggaaaaatgttcagcGTTGTCTTCAAACATGAATACGGTGTC-----AATGAGTA-------ATCATCTACCG--------ATCCA---------GCCTGTGATATTTCCACCCGCGTGTCTTCAGTAGTT-C--------------ATGAT---TACTT-TTATATCACT---TCAA------TCCAT-----------------TTCCCTCTT
i caeSp111.Scaffold567  I 32 I 1
s caePb3.Scfld02_0       3336704 191 +  4147112 TTTACAGGCGGCTGTCATCAAAACCCAATGGCTCGCAGATCGCCTCGgaggaaaaatgttcagtgTTGTGTTCAAGCATGAACTCGGTGTC-----AACAACTG-------ATTACCTAGAA--------TTCTA-----------CTGTGATA--CCTACCCGCGTGTCTTCAGAGATTCC--------------ATATT---TGCTTCCCATATCACT---TGAA------TCCATTT--------------GTTTTCTAAT
i caePb3.Scfld02_0      I 3 I 1
s caeJap4.Scaffold17934   484763 231 +   591668 ttttcaggTCGCCGTCATAAAGACTCAATGGCTGGCTGACCGTCTTGGAGGCAAAATGTTCAGTGTGGTGTTCAAACATGAATTGGGTGTACA-GTAACAAATGTGCCATTTTTAGCTTGAGTGCCATTAGCTCG------ATAAAAGGTGATAATCTcgggtgatttttttttatttgtac--------------gTATT---CTTAC-TCATATCACCA--TCAG------CGCTTTCTAAACGAACGCTAAGTCAAGTCcc
i caeJap4.Scaffold17934 C 0 C 0

a score=-23159.000000
s ce10.chrX              5092364  63 + 17718866 ATATT----TGTGCATTTCGAAA-------------ACAATTTGTATT-----------------------TCTGTCTCCTGT--GTGTACTTCAGTT-------TTTATAT-----
s caeRem4.Crem_Contig0   1927768  81 -  4500979 CCAct----tatttctttcaaaa------------ccaaacCTGTATTCCATATTCGAA-------ATAATCCAATTCTTTGA-GAATTAgcttctac-------tttgtct-----
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     53618  82 -   141584 ATAAT----GTTTCGACCAAAAAC-----------TATAGCCTCCGTT--GTTATAGAA-------ATCATAcgattttgtga-----ttttccaTATCGAT-AATCtgtgt-----
i caeSp111.Scaffold567  I 1 I 6
s caePb3.Scfld02_0       3336896  86 +  4147112 ATAATTATCATTGTCACTTtaaa------------tgttgttttgtttgGGTTTTGTAA-------CCGTTTCAACCTCGTGAACAATTTCTTCGTAT-------TCTGTGT-----
i caePb3.Scfld02_0      I 1 I 6
s caeJap4.Scaffold17934   484994 107 +   591668 --------atattaattttaaaacatgtatttttttgttgccttttttgcccttttagatcctgttttcattttattttaacA--AATCTTTCCACCTCGTCGAattcttattattt
i caeJap4.Scaffold17934 C 0 I 12
e cb4.chrX              10420003 102 + 21540570 I

a score=429359.000000
s ce10.chrX              5092427 902 + 17718866  
s cb4.chrX              10420105 832 + 21540570  
i cb4.chrX              I 102 C 0
s caeRem4.Crem_Contig0   1927852 903 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     53706 883 -   141584  
i caeSp111.Scaffold567  I 6 C 0
s caePb3.Scfld02_0       3336988 898 +  4147112  
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   485113 788 +   591668  
i caeJap4.Scaffold17934 I 12 C 0

a score=-8950.000000
s ce10.chrX              5093329 83 + 17718866 TAGCTTCTGGTTAGGCCAAAAAATATTTGCTACCAAGGTGCGCTATGTATAATTATGTTGACACATTCTTTTGCTTATGATTT
s cb4.chrX              10420937 16 + 21540570 -----TCTGGT--------------------------------------------------------------CTTAGGAATT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3337886 16 +  4147112 -----TCTTGC--------------------------------------------------------------CCTTttgatt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   485901 54 +   591668 ---------------TCAAACACCATTTA--------------TACATACCATTGCTTCATCTCATCTCATCTCATATCATCT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     54589  0 -   141584 C
e caeRem4.Crem_Contig0   1928755  0 -  4500979 C

a score=160.000000
s ce10.chrX              5093412 3 + 17718866 TCT
s caeJap4.Scaffold17934   485955 3 +   591668 TCC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3337902 1 +  4147112 I
e cb4.chrX              10420953 0 + 21540570 C
e caeSp111.Scaffold567     54589 0 -   141584 C
e caeRem4.Crem_Contig0   1928755 0 -  4500979 C

a score=-4217.000000
s ce10.chrX              5093415 85 + 17718866 GAAGCATACGGATTTCCGGAAGGAACGTTTAAAAATAGTTTGGTAACGTTGGTCTTGTTGTTAAATTTCCAGAGAACAAAATAAG---
s cb4.chrX              10420953 23 + 21540570 -----------------------------------------------------------------Tcttcgctgaaaaaattgagaga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     54589 21 -   141584 -----------------------------TAGAAGTAG---------------------------TCTTC--------AAATAAG---
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3337902  1 +  4147112 I
e caeJap4.Scaffold17934   485958  0 +   591668 C
e caeRem4.Crem_Contig0   1928755  0 -  4500979 C

a score=-2813.000000
s ce10.chrX              5093500 111 + 17718866 GCAATAAGCCTGTTTCAGCTTGAACAACGGTTGATAACATAATTTTGGTTCTTCAGAATCTAGTTTATATATTTGGGACCAAACTTGGGCAAATAGCTATAGCCAAATGCC
s cb4.chrX              10420976  17 + 21540570 ------------------------------------------------------------------------ttgATGTCAACCT-----------CTAT-----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3337902   1 +  4147112 I
e caeJap4.Scaffold17934   485958   0 +   591668 C
e caeSp111.Scaffold567     54610   0 -   141584 C
e caeRem4.Crem_Contig0   1928755   0 -  4500979 C

a score=0.000000
s ce10.chrX              5093611 2 + 17718866 GA
e caePb3.Scfld02_0       3337902 1 +  4147112 I
e caeJap4.Scaffold17934   485958 0 +   591668 C
e cb4.chrX              10420993 0 + 21540570 C
e caeSp111.Scaffold567     54610 0 -   141584 C
e caeRem4.Crem_Contig0   1928755 0 -  4500979 C

a score=-1526.000000
s ce10.chrX              5093613 9 + 17718866 AAACAAATT-
s cb4.chrX              10420993 6 + 21540570 ---CAGAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1928755 6 -  4500979 ---GAAAAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3337903 9 +  4147112 -agaaaaatc
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   485958 0 +   591668 C
e caeSp111.Scaffold567     54610 0 -   141584 C

a score=-710.000000
s ce10.chrX              5093622 4 + 17718866 AAAA
s cb4.chrX              10420999 4 + 21540570 AGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1928761 4 -  4500979 ATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     54610 4 -   141584 AAGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3337912 4 +  4147112 tgCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   485958 0 +   591668 C

a score=268839.000000
s ce10.chrX              5093626 243 + 17718866 ACCTACACAGTGAATGGAGTTCCTTCTCCGTCCCATCCAACAACAACCTGATCGATTTCATTGGTATTGCGGAGCCAGTTGATGAGTGGCTCGTAGTACTCGAGAAGTGGTTGAGCGTCAAGTTCACCTTTCCCAGAAATCATCTCAAGAGCCTTGAGCCATGTGATGGAAGATCCCAGCTTCATGGTCTCGCGAAGCTTCTCAGTGGTGTCTTCGGAAAGGATGCATCCCTCACTCTGAAAA
s cb4.chrX              10421003 243 + 21540570 ACTTACACAGTGAATGGAGTTCCTTCTCCGTCCCATCCAATGACAACTTGATCAATCTCATTGGTGTTACGAAGCCAGTTGATAAGTGGCTCGTAGTACTCGAGAAGTGGTTGAGCATCGAGTTCTCCCTTTCCAGTGATCATTTCAAGAGCCTTCAACCAAGTGATCGAAGATCCCAACTTCATGGTCTCACGAAGTTTCTCGGTAGTATCCTCAGACAAGATGCATCCTTCGCTCTGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1928765 242 -  4500979 ACTTACACAGTGAATGGAGTTCCCTCTCCATCCCATCCATTCACAACTTGATCAATTTCATTGGTATTGCGGAGCCAGTTGATAAGTGGTTCATAGTATTCAAGAAGTGGTTGAGCATCGAGTTCTCCTTTTCCAGTGATCATTTCAAGAGCCTTCAACCATGTGATCGAGGATCCCAACTTCATGGTTTCACGGAGTTTCTCGGTTGTGTCTTCGGAAAGAATACATCCTTCGCTCTGGAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     54614 242 -   141584 ACTTACACAGTGAATGGAGTTCCTTCTCCATCCCATCCGATAACAACTTGATCAATTTCATTGGTATTACGGAGCCAGTTGATCAGTGGTTCATAGTACTCAAGAAGTGGTTGAGCGTCGAGTTCTCCCTTTCCAGTGATCATTTGGAGAGCCTTGAGCCAAGTGATAGAGGATCCCAACTTCATTGTCTCACGGAGTTTCTCGGTAGTATCTTCAGACAAGATGCATCCTTCGCTCTGAAA-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3337916 243 +  4147112 ACTTACACTGTGAATGGTGTTCCTTCTCCATCCCATCCAATAACAACTTGATCGATTTCATTGGTGTTACGAAGCCAGTTAATGAGTGGTTCATAGTACTCAAGGAGTGGTTGAGCATCGAGTTCTCCCTTTCCAGTGATCATTTGAAGGGCCTTCAACCATGTGATGGAAGATCCCAACTTCATGGTCTCACGGAGTTTCTCGGTAGTGTCTTCGGAAAGGATACATCCTTCGCTCTGTAAA
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17934   485958 241 +   591668 ACTTACACTGTGAATGGCGTTCCTTCTCCATCCCAGCCAATAATGACTTGATCAATCTCATTAGTGTTACGAAGCCAATTGATAAGTGGTTCATAATATTCCAAAAGTGGTTGAGCGTCAAGTTCTCCCTTTCCAGAAATCATCTCCAAGGCCTTCAACCAAGTGATTGATGATCCCAACTTCATTGTCTCGCGGAGCTTCTCAGTTGTATCCTCGGACAAAATGCATCCTTCGCTCTGAA--
i caeJap4.Scaffold17934 C 0 C 0

a score=-15276.000000
s ce10.chrX              5093869 40 + 17718866 -TCAATGttttt--aattaataaaata--aataat------------aataaaaCAA---
s cb4.chrX              10421246 33 + 21540570 -TCATC-TTTTAGCCATCAAAAACCT------ATT------------GAAAAT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1929007 36 -  4500979 ---------TTA--CATAAACAACAT------GTTTTCTCTGATATAGGTGAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     54856 34 -   141584 --CAAT-TATTC--TAATAAAAACTCC--AAACTT------------GATAAT-------
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   486199 42 +   591668 TTTAACATATAA--TATTGataacaaaatattttt------------gatatt----tga
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3338159 34 +  4147112 I

a score=309829.000000
s ce10.chrX              5093909 310 + 17718866 CTAACCAAAATAGTTCCCTCTGGGCATAAAGCCTTCAGAATTTGGAATTTCAGCACATAGCTGATAAGCGTTCGTGTGGCTGGTGAATGAACTTGGGAGACGGAGTTGTGGATGAGAGCGTCCAAATTAGATGTGTTGTATGGTTGTGGGGAGCGAACTCCTTCGTACTTGTTTCTGATCTCCCACCATCTGTCGTTCAGCTTGTTCTTTGGAACTGTGCCGTCGAACAACTCGTATCTCCAGTTATCAGCAGCAATTGTGAATGGCAGCTTGGTGAAACTTTCGAGTGATTCCCTAAAAGACAAACATT
s cb4.chrX              10421279 300 + 21540570 CGTACCAAGATAGTTCCCTCTGGACATAAAGCCTTCAAGATTTGGAACTTGAGAACATAGCTGATAAGAGAGCGAGTAGCTGGGGAATTGACTTGAGATACAGAGTTGTGGATGAGAGCGTCCAAGTTGGAAGTGTTGTATGGTTGTGGAGAGCGAGTTCCCTCATACTTGTTTCTAATCTCCCACCATCTGTCATTCAACTTGTTCTTTGGCACTTTGCCCTCGAACAACTCGTATCTCCAGTTGTCAGCGGCAATCGTGAATGGCAGTTTGGTGAAGCTTTCGAGCGACTCCCTAAAA----------
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   1929043 310 -  4500979 CTTACCAAAATAGTTCCCTCTGGGCAAAGAGCCTTCAAGATTTGGAACTTGAGAACGTAGCTAATGAGAGAACGGGTAGCTGGGGAGTGAACTTGAGAGATGGAGTTATGGATAAGGGCGTCCAAGTTGGAAGTGTTGTATGGTTGTGGAGAGCGAGTTCCCTCATACTTGTTTCTAATCTCCCACCATCTGTCATTCAACTTATTCTTTGGCACTTTTCCCTCGAACAACTCGTATCTCCAGTTATCAGCGGCAATTGTGAATGGCAGTTTGGTGAAGCTTTGGAGCGACTCTCTGCAATTAATACGTT
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold567     54890 303 -   141584 CTTACCAAAATAGTTCCTTCTGGACAGAGAGCCTTCAAAATTTGGAACTTGAGAACATAGCTGATAAGAGAACGAGTGGCTGGAGAATTAACTTGAGAGACAGAATTGTGAATGAGAGCATCCAAGTTGGAGGTATTGTATGGCTGTGGTGAGCGAGTACCCTCGTActtatttctgatttcccACCATCTGTCGTTCAACTTGTTCTTTGCGACCTTTCCTTCAAACAACTCGTATCTCCAGTTATCAGCGGCAATTGTAAATGGCATTTTGGTGAAGCTTTCAAGAgactctctgaaaatt-------
i caeSp111.Scaffold567  C 0 I 30
s caePb3.Scfld02_0       3338193 303 +  4147112 tttaccAAGATAGTTCCCTCTGGGCAAAGggctttcaaaatttggaatttgagaACGTAGCTGATAAGAGAACGTGTGGCTGGAGAGTGTACTTGAGAGACAGAGTTGTGTATGAGGGCATCAAGATTGGAAGTGTTGTATGGTTGTGGAGAGCGAGTACCTTCGTACTTGTTTCTAATCTCCCACCATCTGTCATTCAACTTGTTCTTTGGCACCTTTCCTTCAAACAACTCGTATCTCCAGTTGTCAGCGGCAATTGTGAATGGCATTTTGGTGAAGCTTTCAAGCGATTctctgcaaatt-------
i caePb3.Scfld02_0      I 34 I 35
s caeJap4.Scaffold17934   486241 293 +   591668 CATACAAGGATAGTTCCCTCTGGGCAGAGTGCCTTCAAGATCTGGAACTTGAGAACGTAGCTAATGAGAGTGCGAGTAGCTGGAGAGTGGACTTGAGAAACTGCATTATGAATAAGAGCATCCAAATTGGAGGTGTTGTATGGTTGTGGGGAGCGTACTCCCTCGTACTTGCTTCTGATTTCCCACCATCTGTCATTGAGCTTGTTGGTTGGAACTTTTCCTTCGAACAACTCGTATCTCCACGTATCGGCAGAAATAGTGAATGGAAGTTTAGTGAAACTCTCAAGAGACTC-----------------
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              5094219 27 + 17718866 TTGATGATTTTTTTAATATTTGTAGAG
e caePb3.Scfld02_0       3338496 35 +  4147112 I
e caeJap4.Scaffold17934   486534  0 +   591668 C
e cb4.chrX              10421579 33 + 21540570 I
e caeSp111.Scaffold567     55193 30 -   141584 I
e caeRem4.Crem_Contig0   1929353 25 -  4500979 I

a score=142782.000000
s ce10.chrX              5094246 157 + 17718866 CTTACTTGTAAAGTTTATTGATGATGACAGAATCCTTAATATCCAAGTGCTCTGATGGAACAAGCTTTTGAGAGTACAAGTAATGTGGGTTTGTTGAGAGGTGTGCAAATGCATTGGCGATAGCGTCGGTTATCACTGGTGATGCTTGCTCTCTGAA
s cb4.chrX              10421612 157 + 21540570 CTTACTTGTAAAGCTTGTTGATGATCACGGAGTTCTTAATGTCTAAATGGTCGGATGGAACAAGTTTCTGAGAATACAAGTAATGTGGGTTAGTGGCAAGATAGGCGAAAGCGCTGGCGATGGCGTCAGTGATAACTGGAGAGGCTGGctctctgaa
i cb4.chrX              I 33 I 20
s caeRem4.Crem_Contig0   1929378 157 -  4500979 ctcactgGTAGAGTTTGTTAATGATGACGGAGTTCTGAATGTCCAAGTGCTCAGATGGGACAAGCTTTTGGGAGTACAAATAATGTGGATTGGTGGAAAGGAAGGCGAAGGCATCAGCAATAGCGTCAGTGATAACTGGGGATGCTGGTTCCCTGTA
i caeRem4.Crem_Contig0  I 25 I 27
s caeSp111.Scaffold567     55223 155 -   141584 CTCACTTGTAAAGTTTGTTAATGATAACAGAGTTCTTAATATCCAAATGCTCAGATGGGACAAGCTTTTGGGAATACAAGTAGTGTGGGTTGGTGGCGAGGAATGCAAAGGCATTGGCAATAGCGTCAGTGATCACTGGGGATGATGGCTCTCTG--
i caeSp111.Scaffold567  I 30 I 24
s caePb3.Scfld02_0       3338531 157 +  4147112 CTCACTTATAGAGTTTGTTGATAATCACGGAATTCTTCATATCCAAGTGTTCAGATGGAACAAGCTTCTGAGAATACAAATAATCTGGGTTGGTGGAAAGATACGCGAAAGCATTGGCGATAGCATCAGTGATAACTGGAGATGCTGGCTCTCTGAA
i caePb3.Scfld02_0      I 35 I 19
s caeJap4.Scaffold17934   486534 147 +   591668 ----CTTGTACAACTTGTTGATAATAATCGAATCCTTGATCTCTAGATGCTCAGATGGAACAAGTTTCTGGGAATAGAGATAATGTGGATTAGTGGCAAGATGAGCAAAGACATTGGCAATAGCGTCTGTGATAACTGGCGACGCTGGTTC------
i caeJap4.Scaffold17934 C 0 C 0

a score=0.000000
s ce10.chrX              5094403 24 + 17718866 GTGAATTTTGATTCTTTAATTTTT
e caePb3.Scfld02_0       3338688 19 +  4147112 I
e caeJap4.Scaffold17934   486681  0 +   591668 C
e cb4.chrX              10421769 20 + 21540570 I
e caeSp111.Scaffold567     55378 24 -   141584 I
e caeRem4.Crem_Contig0   1929535 27 -  4500979 I

a score=960524.000000
s ce10.chrX              5094427 1217 + 17718866  
s cb4.chrX              10421789 1204 + 21540570  
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   1929562 1158 -  4500979  
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold567     55402 1113 -   141584  
i caeSp111.Scaffold567  I 24 C 0
s caePb3.Scfld02_0       3338707 1170 +  4147112  
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17934   486681 1180 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-44737.000000
s ce10.chrX              5095644 244 + 17718866 GCGTTTTTAACTATTTTTTCGATTTTTAATTAATAATGTTCAACAAGAGTGTTCGGATATATTAAGTTCTCAAGTTTTAAACAATAAGAGTTTTCACAAAAATTTCCATTCTTTTCTGT-TAAGAACGGAAAACGGGAACAGGTTCTTATCACAACTTCACattaattaaaatttctttaaaaaattatatCTACAACTATGAACATGATCTAAATCTATC------GGAGTTCAGTCAATAACTATTTAA
s cb4.chrX              10422993 100 + 21540570 ataacatct--------------------------------------------caaatttataaattttttaaaatc----------------------agatctcatttttcttccac-t-------------------------------CGACTTTTTAG--ATTAACATAT---------------------------AGTAGAATCTCTCctaattatttca------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1930720  72 -  4500979 GCGACTTCA--------------------------------------------CGGA------------------------------------------GAACCTGAAACTTGGTTCat-ta------------------------------caactttttcattattcCCAGTT---------------------------ATTAGAAatccatc-----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     56515  79 -   141584 GCAAGTTTA--------------------------------------------AGA-----------------GATG--------GTGAGGCATCATTGAAAT----ATCTCCATCCAGATAGG---------------------------GCAACTTCTCGG------------------------------------------AGAACCTGAAATTGTT------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3339877  71 +  4147112 GCAACTTCG--------------------------------------------CGGA--------GAACCTATAATC----------------------AAAT----TACTTTGTTTTG-TAGA---------------------------TTA--TGTTCGA------------------------------------------AGGATCCTATCttatc------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   487861   0 +   591668 C

a score=-12094.000000
s ce10.chrX              5095888 115 + 17718866 CAAATAACTTCAGAACAAAAGTTTTGAATTTTACCATTCAACCTAATCTAAACAATACTTTAAAATTACACAGGTATCACTTCCAAACCTGGGACTTAAATGTATGCAGAATATC
s caeRem4.Crem_Contig0   1930792  15 -  4500979 -------------------aatttt---cttcatatC------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     56594  52 -   141584 ------ATTTGAAGAGATGAATGTT---GTTTTCCCACtcaattgttcttttc---------------------taTTACTT---------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3339948  43 +  4147112 ---------------gaaaactttt---tcttacGTTCCCACCTATTATATat---------------------tctaactt---------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   487861   0 +   591668 C
e cb4.chrX              10423093   0 + 21540570 C

a score=-14198.000000
s ce10.chrX              5096003 74 + 17718866 TTTTTAAAACCAATTTTATATCTATTAATAATCTGCGAAAACCCTTATTTTGTTTTTCTACTTATTAAATGCAT
s cb4.chrX              10423093 50 + 21540570 ttttttaaagaaattccaTA---ATTAAT----------TTTCGAGATCTCATATCTCAATTC-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1930807 10 -  4500979 ----------------------------------------TTCTACATCT------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     56646 28 -   141584 -TTTCCGAAAGTAT--------------------------ATACATATCTCATAG-------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3339991 27 +  4147112 -tttt-----gtat--------------------------atacATATCTCGTAGATCT---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   487861  0 +   591668 C

a score=344081.000000
s ce10.chrX              5096077 497 + 17718866  
s cb4.chrX              10423143 543 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1930817 454 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     56674 472 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3340018 460 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   487861 484 +   591668  
i caeJap4.Scaffold17934 C 0 I 33

a score=-16028.000000
s ce10.chrX              5096574 35 + 17718866 ACACCTTA----ATAAGATAAACCGCTGCGTTTTATTT----C
s cb4.chrX              10423686 33 + 21540570 GAATGCCA-----TAGTACCAAATGTAGTTTGCTTAAT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1931271 43 -  4500979 aaatgtgaaattgtAGTACTAGAATTATCAgactcatttttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     57146 33 -   141584 a--------ttttggGTTTAGAtaatgtttttcgaaat--tct
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3340478 36 +  4147112 aaacgttt-cttttAATCTAATtacaaatct--gaaat----c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   488345 33 +   591668 I

a score=599009.000000
s ce10.chrX              5096609 1115 + 17718866  
s cb4.chrX              10423719 1137 + 21540570  
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0   1931314 1090 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     57179 1054 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3340514 1077 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   488378 1043 +   591668  
i caeJap4.Scaffold17934 I 33 C 0

a score=-11740.000000
s ce10.chrX              5097724 43 + 17718866 TACAAGCAAC--AACTTTA------AAGAAATAAT-------TAGGCAATTTTTTTTT
s caeRem4.Crem_Contig0   1932404 18 -  4500979 -------GACATAATTTCA------TGGGAA---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     58233 16 -   141584 -------AAC--AATGCCa------aaaaaa---------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3341591  8 +  4147112 -------G----------A------ACAGAA---------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   489421 56 +   591668 CGTACGAAAC--GATTTGATTGAATAGAGaataatatatatatatatattttttcatt
i caeJap4.Scaffold17934 C 0 I 402
e cb4.chrX              10424856 55 + 21540570 I

a score=-3038.000000
s ce10.chrX              5097767 28 + 17718866 GTCTGGT--------------GTGATAGACTGCTTTTTCAAA
s caeRem4.Crem_Contig0   1932422 34 -  4500979 -----GTTAATTGGATTCGTCTTATGGAacag---ttgcaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     58249 19 -   141584 -----GT--------------ATGAGGAACTA----TATAAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3341599 17 +  4147112 -----GT--------------ATATGAAAC------AATAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   489477 402 +   591668 I
e cb4.chrX              10424856 55 + 21540570 I

a score=-21494.000000
s ce10.chrX              5097795 67 + 17718866 TGGAGATGTTTCAT-TAGCTTCCAATTTTATGCTG-----------AAATTATGATCTAAACCATATGTATT------TCCTCTA---
s cb4.chrX              10424911 81 + 21540570 TAGAACCGTTTGAT-CAACATCAAAGTT-ACATTATtacaacaa--aaacaagaatatcAACAATATATATCTAAGTATTTTTAA---
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   1932456 23 -  4500979 ----------------------------------------------aaatga-------aataatacGT---------TGTTGTG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     58268 29 -   141584 ---------AGGGTGTAACTTAAGAG--------------ACAACTAAATCA------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3341616 65 +  4147112 ---------TGGATAAAGCATCGGAAGT---ATTgttctcacaa--aaaacattgttagcataatttgt---------ttttggtaTT
i caePb3.Scfld02_0      C 0 I 185
e caeJap4.Scaffold17934   489477 402 +   591668 I

a score=-31142.000000
s ce10.chrX              5097862 163 + 17718866 TCAGTATTGTTTCATTTGCTTTATTTTGACAGCTTATGTTTCAGTTGTCGTTTTTTCGTATACAACAATA---------GATAATTGG----------------------------CAAAATATGTATCATTTCtaattatattgattagtttattat---------tttttgat----------------------------------------------------------atttaaaaaaatGAACACAGATATA--------------GCGTTTTAA
s cb4.chrX              10424992 256 + 21540570 ---GCATTC-----------TGATGttggga----attttttcgaaaatatttttttttg-agaatatttaACATTATGCTTAGGTGGTTACATTCTAATTCTAACCATattaacctgaaaaatt-----gctcTCAGaccgtgaaaaaaatttttgtatcgTGACCTGTTGAATATCTGCCTTATTTATAAAACGCTATAGAGGTTTGCTGGTCCCCGTGTCACTTTGCCCgcttttgaaacatttgaa-aactaaatatagatttacgtgacctTTTAA
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig0   1932479 110 -  4500979 ---GCATTG-----------TGGTTATGG-------------TTAAGacgtttt-------ggaaaattt---------catgagTGA----------------------------TGAAAAAC-------------GAGGATGAGTGGAAAT--------------TATTGAAT----------------------------------------------------------CTTAGAAAACATTTGCA-AAGAAAA--------------ACGTTAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     58297  81 -   141584 -----------------------------------------------ACAGCTT-------ACAGTAATG---------CTTTTGCGT----------------------------CGTAA----------------TAATATTTCTGaagttccttt---------ttttgaac----------------------------------------------------tgaatgatttgaaaatagttgt--------------------------------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3341681 185 +  4147112 I
e caeJap4.Scaffold17934   489477 402 +   591668 I

a score=-4613.000000
s ce10.chrX              5098025 59 + 17718866 AATGTAGTAGTGAGGTGTGGTACAATTATATGA-----TTTACTTCCAAATTCAGGTGCATCTT
s caeRem4.Crem_Contig0   1932589 36 -  4500979 --------AGCACAATCAAGT-TAATCAT-TAG-----TTTGCTTCT--ATTa-----------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold567     58378 25 -   141584 --------------------------CAT-TGgggttttctctttct--gttcA----------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3341681 185 +  4147112 I
e caeJap4.Scaffold17934   489477 402 +   591668 I
e cb4.chrX              10425248 117 + 21540570 I

a score=169.000000
s ce10.chrX              5098084 3 + 17718866 AGG
s caeJap4.Scaffold17934   489879 3 +   591668 ggg
i caeJap4.Scaffold17934 I 402 C 0
e caePb3.Scfld02_0       3341681 185 +  4147112 I
e cb4.chrX              10425248 117 + 21540570 I
e caeSp111.Scaffold567     58403 0 -   141584 C
e caeRem4.Crem_Contig0   1932625 2 -  4500979 I

a score=-3827.000000
s ce10.chrX              5098087 11 + 17718866 TAATATT-CAAA-
s cb4.chrX              10425365 12 + 21540570 taatatcacaaa-
i cb4.chrX              I 117 C 0
s caeRem4.Crem_Contig0   1932627  9 -  4500979 gaattt---aaa-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold567     58403  4 -   141584 --------TAAA-
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   489882 11 +   591668 --tttttgctgag
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3341681 185 +  4147112 I

a score=274795.000000
s ce10.chrX              5098098 1147 + 17718866  
s cb4.chrX              10425377 1302 + 21540570  
i cb4.chrX              C 0 I 146
s caeRem4.Crem_Contig0   1932636 1159 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     58407 1070 -   141584  
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3341866 1061 +  4147112  
i caePb3.Scfld02_0      I 185 I 2
s caeJap4.Scaffold17934   489893 1111 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=599.000000
s ce10.chrX              5099245 10 + 17718866 CGACGCAAAA
s caeJap4.Scaffold17934   491004 10 +   591668 CAACGGAAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3342927  2 +  4147112 I
e cb4.chrX              10426679 146 + 21540570 I
e caeSp111.Scaffold567     59477  2 -   141584 I
e caeRem4.Crem_Contig0   1933795  0 -  4500979 C

a score=-14004.000000
s ce10.chrX              5099255 105 + 17718866 CATATACACCTCAAAATGTTTTTTTCCAAACTTTCGTTTTTTATTCCAAAACATTATTCAACTTATTTTATAGGGACTAT--CC--TACCTAACAGCCC------GATAAGCCTA---------
s caeRem4.Crem_Contig0   1933795  88 -  4500979 ----------------------------------ctAATATAATTGTAATAAAGTTCTATACCGAATGTTTTTAAATCAACATC--TAGTTCGTCTGTATCAAATGTTAAGAAGAATTCTccga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     59479  68 -   141584 -----------------------------------GCTTATTATTGCATTT---TACTAAATCAAGGTTTGTGGAAAC----TCAGTCAATTCTTTTTA------GCCAAGATAAA--------
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3342929  53 +  4147112 -----------------------------------------Tattgaaatt----------tcgagtttATCTGAACT----TC--TACATAGGATatc------gttaaaaaaaa--------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17934   491014   0 +   591668 C
e cb4.chrX              10426679 146 + 21540570 I

a score=-3863.000000
s ce10.chrX              5099360 12 + 17718866 CAAATGAGTCTA------------
s cb4.chrX              10426825 12 + 21540570 CGACTGCCTGTA------------
i cb4.chrX              I 146 C 0
s caeSp111.Scaffold567     59547 12 -   141584 ----------TAAA--CGaataaa
i caeSp111.Scaffold567  C 0 I 3
s caePb3.Scfld02_0       3342982 14 +  4147112 ----------taaaactgagtATA
i caePb3.Scfld02_0      C 0 I 58
e caeJap4.Scaffold17934   491014  0 +   591668 C
e caeRem4.Crem_Contig0   1933883  0 -  4500979 C

a score=-2847.000000
s ce10.chrX              5099372 19 + 17718866 AAACGCCTGAAATTGGCCT
s cb4.chrX              10426837 19 + 21540570 AGATAATCAAAAGTAGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1933883  8 -  4500979 ----aatgagaa-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     59562  1 -   141584 ------------------t
i caeSp111.Scaffold567  I 3 C 0
e caePb3.Scfld02_0       3342996 58 +  4147112 I
e caeJap4.Scaffold17934   491014  0 +   591668 C

a score=-12384.000000
s ce10.chrX              5099391 50 + 17718866 AGAAAGCTTAAGTGAGCCGAAACATA--TATACAAAATTG----TTTTACAAACAT
s cb4.chrX              10426856 38 + 21540570 GAGTAGATTAA--TGAGTGAAAAATCTGCATATTGAATTT----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1933891 23 -  4500979 ---------------aatgaagaaac--ccTAAAAAGTAT----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     59563 41 -   141584 ga-------------aataGAATATC--CATGGTTgatgttttcttttaaaaaaat
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   491014 16 +   591668 -------------------GGAAAgc--tacacgaaa-------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3342996 58 +  4147112 I

a score=-41911.000000
s ce10.chrX              5099441 361 + 17718866 AAACTACAGATATTTTACAAATACCGTTGAAACACATTAATTATT----------ATCACAACTGTTTCTTTTGATAAATTATATTA-CTTATTCTATGAGTATTGTGAAAAGCTGAGAC-GTCGAAGCAAATCTG------------------------------------AGAGGACTATGAAAAAGTTATTTGGTTTCAAAATTTCTGTTAGATTTCAAAAAGTAATTGATAGGA---------------AAAGGCTCAAAAAATTCAAACAGGAACAACAAA----------------------AACGTATTAACTAATGGTTCCGTTTTTGGAATTAAACCATTTGAACCAAAAATATCATAAACTGTATAGTTCAAACATTTGAAAT-AAATATGAAAGTTGTATATATCGGAGA---TACACTTCTCCTTGGAAATGGAGACA
s cb4.chrX              10426894 358 + 21540570 ------------------------------AGAATGCTTTAAATT----------ATTGTAGCTTCTTCCTACA--AGCTAATTATA-CAATTTTACTGATTCGAGT-TTGAATTAAGAT-TTG--AACAGGTTTTGCACAAGACGTTTAATAAAGATCATCacaaatcattaaaaaaatgcctaaa-------ttcTTCCAATAGTGgccggaaaatttggaaaacaattAAGCTAATTCCAAAAGTCAAAGAGAAACTCTTAAAAGCCAAGATAGACTAATAAATCACAAAGCTTGATAGAATCATACCAAA--AGGTGACGAC------------------------------AAGAAATCAGAAACTGTACAGTTCAAGTGATGAATTC-AGAATTG-GAGGTGTATATTGCGGAGA---TAAACCCTTCT-TGTCCAGAGGAATG
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   1933914 242 -  4500979 ------------------------------AATTTGCTTAACACT----------AGTAAATTTTC-----------------AATA-CTGTTCTCATG---------------TCAGAC-atg--atcag-----------------------------------------aaaaaattctcgaaa-------t-----cgATATT-------ATGTTTTAAACAGAGTACAGTGAATT-------------GGAGGACCTCACGAATTGAAACGAATTGATAAA----------------------ACTATG--AGGTGACGac------------------------------ggaaaatcagaaatcgtATAGTTCAAACCATTGAAAT-AGAACCGAGAGGCGTATATTGCGGAGA---TAAACTTCTTT-Gggataaagaaaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     59604 234 -   141584 -aattatcga------ataact--ttttaaaaacggtttcgaaaa----------atggaaatttt----------------------cattttttatc------------atctaaaa-------------------------------------------------------aaaatatgcTTCA-------AAGTTACGGTA------------TGTTGAAAACAC------------------------aaagaagtttgaaatttacTGAAAAT-ACTGAA----------------------ATGGTG--AAGTGACGAC------------------------------AGGAAATCAGAAACCGTATAGTTCAAacaatcgaaatgaaaaacggg------ACATTGCGGAGA---TAAACTTCTCC-GGGAAACTGAGATA
i caeSp111.Scaffold567  C 0 I 12
s caePb3.Scfld02_0       3343054 263 +  4147112 AAAATACGAA------TCAGC------TAAAAG----TTGGGAGA----------ATGAAATTAtt-----------------agtaaaatttttgatt-----taa-cAGAGCTGAAAC-TTC--CGGAGGTCTA------------------------------------ACAAAATTTGGTGAA-------TGGATTCGacaa--------aactcttgaaaatga------------------------GGGAACAccacacattt--tgaaaacgaagaaa----------------------atgatg--aagtgACGAT------------------------------AGGAAATCAGAAACCGTATAGTTCAAAcaatcgaaatgaaaataaggAGGCGCACATTGCGGAGA---TAAACTTCTCC-GGGAAACTGAGATA
i caePb3.Scfld02_0      I 58 I 4
s caeJap4.Scaffold17934   491030 238 +   591668 -----------------------------aaaaatgctacgTATTTATTTTCTCGAAGAAAACTGT-----------------Atca-ctttttgga-----------aaatattgagACAATT------------------------------------------------GTAGAATTTCTAGAA-------TTAATACTTTGT-----------TCTAAAGTGCAGT-----------------------GACACAAATACAAAATGATACCGGATAAAT-------------------------ATTCTG--TCGTGACGAC------------------------------GGAAAATCAGAAACCGTATAGTTCAAACAATTGAAATGAAGAATGGG-------TATCTCGGAGATTGTATACTTCTTC-GGAAGACGGATAAA
i caeJap4.Scaffold17934 C 0 C 0

a score=-5118.000000
s ce10.chrX              5099802 13 + 17718866 CAGGCAA-------TCGGTG
s caeRem4.Crem_Contig0   1934157 12 -  4500979 aaga-aa-------tcgggA
i caeRem4.Crem_Contig0  I 1 I 14
s caeSp111.Scaffold567     59850  4 -   141584 CAGA----------------
i caeSp111.Scaffold567  I 12 C 0
s caePb3.Scfld02_0       3343321  4 +  4147112 CAGA----------------
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17934   491268 19 +   591668 AAGA-GATGCCGTCTTAGTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10427252 35 + 21540570 I

a score=179521.000000
s ce10.chrX              5099815 358 + 17718866  
s cb4.chrX              10427287 483 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   1934183 363 -  4500979  
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold567     59854 367 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3343325 362 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   491287 338 +   591668  
i caeJap4.Scaffold17934 C 0 I 929

a score=-31941.000000
s ce10.chrX              5100173 103 + 17718866 AAAAAATACA-----------------------------------------------------------AACAAAACAGATTTCTTATAAGTTACAAATAAATAATGGTGAATTCAAGTTAATTTAGAAACAATTAACACACAA--TCACAGTACCGGACGTTT-----
s cb4.chrX              10427770 146 + 21540570 aaaaactggatGAAAAACGAGCTACATTGTTTTGGTAACACTGTAGGTGTTTGAGAAAGAACCCATcacatcaaaga---------aaaaaataatttcaaattgcgTCT-------ATTggtttgtaaattttttcaggagaa--tTCCAGGGAAACACAGTT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1934546  63 -  4500979 ACAAACAGGA-----------------------------------------------------------AGTGGGAT---------GAAATATGGATTTAAACTAC-----------ATTG--TTGTATCTCGCT------GCG--TTTCAG-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     60221  25 -   141584 -------GGA-----------------------------------------------------------ATTGGAAT-------TGgtaaaagag----------------------------------------------gaa-------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3343687  83 +  4147112 TAAAATTGGA-----------------------------------------------------------ACTACACTGGATTCCTGATAAAATAA-CTGAAATGAC------------TTGGTTTCT--------------GAACATTCTATGGCATTACTGGTATTTT
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold17934   491625 929 +   591668 I

a score=-12300.000000
s ce10.chrX              5100276 55 + 17718866 GTGAGACCTTAT------------AGTCCAGATTTGGGAATTACTGAC---------------------AACCGAATAATACGCA--GAA-------
s cb4.chrX              10427916 95 + 21540570 --ATGATATTATTCTGGAACAagaaatcggagctgtggaaggtCTCACAGCGGCAACTACGGTAACCTAAAACCATTAATAACTTTCGGACTTATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1934609 45 -  4500979 ----------AT---------AAAAGTGAGGAATGTCGAATGTTCTGC---------------------AATCCATCAGAA------GGG------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     60246 36 -   141584 -------------------------------------gagatcTCCGT------------GTTAAC---AATCAAGTAATATCCT--GAA-------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3343770 38 +  4147112 I
e caeJap4.Scaffold17934   491625 929 +   591668 I

a score=-74788.000000
s ce10.chrX              5100331 280 + 17718866 --------------------CACTGGAAAATGAAAA--------AGTTTTAGGGATGCCGCGGATTTCCAACTAATCAGATTTTTGCTAGACGTACAATTAATGTTAAGTTAGAATAATGTCAAAACATCTGGTGA--AGTTTGTGAATAATTGGGTTTTTAATG-----TTTAGTTGTTTTAAGTTTTAACATTTGTTAGTTCTATCATATTTTT----------TTGGATTCAGTTTTAGTTTTTGTGATCCTGTGTGCCCAATTGAGGAAAACTGGTTGCGTTTTAGGTGCCTACAATACAATTTTACCA--AGTTTTTTTTGC-----
s cb4.chrX              10428011 267 + 21540570 TCTTGCATTTTTTGCGTTTCCagtaaataacaaaaa--------aatgaaagaaagtAGA--TTTCCTAGGCAAATCGAAATTTTATTAGG-GTAGATCAAATTTA--------AATTCCTCA-AACTTATGATGA--GCGACATAAAGATTT---TTTCTAGTAAAAATGCTTGCTCTTTTGCCT---GGGCTCATCAAATTCTT-----TTCTT------------GATAT-----------TCTTTTCTTTGATTCAAATGCTTAACGGAGGT---------TCTagctttctaaattttcacttttcaaataTCCATATTTTCCCTAC
i cb4.chrX              C 0 I 120
s caeRem4.Crem_Contig0   1934654  99 -  4500979 TCCTGgaatt-----------------------aaa--------actgaaaaaaatttga---------------------------------------aaaccct--------attttttca---------------------------------tttccaaca------------------------------gtctagttttc-----tactt----------------------------------------ttca----------------------------------------ttttactttcc----attcgaatttttgc---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     60282 232 -   141584 -----------------------TATATAATACATTTTGAG---AACGA-AGACATTCA------TTgaagtaaaaaaga-------------------aaattttattt----gtatCCGAACGGCTAATCGTGG--TAATCATTTCAGCTT---CTTTTCATGAAGACACGTGttttttttAAC---------TCAGAGTTCACAATAATGTTG------AAAGCTGATAT--GTTTAACAAGTTATACTTCTGTTCCAACAC--AATGCaccc--------ctcttcttccttcattttctagttt------GATCG-AGATGC-----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3343808 202 +  4147112 --------------------cactagaaaagagaaattcagTTCATCAATAGATATtaag--aatttcagattaaaaagA-------------------GAA------------GtatcttcacaatttttcacagtttgatTGTCGATACCT---TTTTTCG-GTGGACCATTatctttt------------------agttttctgatATGTTGCACCCTAAATCTGAAAT-----------------CTTCCATT---------------------------TCTAACTTGTTCAATTTCTAGTTT------GATCatagtttc-----
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold17934   491625 929 +   591668 I

a score=-7537.000000
s ce10.chrX              5100611 77 + 17718866 AGATTTTTCTATCCTGTCGGTCACAATGCAACTAGCAAGTAAAAAAGTAATGACTTTGTTTTAAATACCATGTGCTA
s caeRem4.Crem_Contig0   1934753 23 -  4500979 -----------------------aatttcaacT----------------TTCCTGTCGATTC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     60514 42 -   141584 ATgacttttcattc-----gaaatatTCCATTT----------------CTCGTCTCTTTTTG--------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3344010 47 +  4147112 agaaacttccgTCC-----GAATTATTGCAATT-----------------TCATTACTTTTCAGTCACC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   491625 929 +   591668 I
e cb4.chrX              10428278 120 + 21540570 I

a score=-1900.000000
s ce10.chrX              5100688 17 + 17718866 GCTGAGTTTCATCATGT--
s cb4.chrX              10428398 19 + 21540570 GTTTCATTTCACCATATTA
i cb4.chrX              I 120 C 0
s caeRem4.Crem_Contig0   1934776 13 -  4500979 ------TTTCAACATATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     60556 13 -   141584 ----CTGCTCCCCATTT--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3344057 13 +  4147112 ----CAATTTCACCTTT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   491625 929 +   591668 I

a score=1461895.000000
s ce10.chrX              5100705 1526 + 17718866  
s cb4.chrX              10428417 1535 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1934789 1527 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     60569 1517 -   141584  
i caeSp111.Scaffold567  C 0 I 20
s caePb3.Scfld02_0       3344070 1518 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   492554 1505 +   591668  
i caeJap4.Scaffold17934 I 929 C 0

a score=-7485.000000
s ce10.chrX              5102231 17 + 17718866 TCAGTTTCA---TTATA---TCC----------
s cb4.chrX              10429953 16 + 21540570 -tcgtttcaaacatata----------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1936317 14 -  4500979 -TGGTCTGAA--CTaca----------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3345588 16 +  4147112 tggGTTTC----ATATAGTa-------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   494059 24 +   591668 ttatttttc---ctaaA------GAACTGATAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     62086 20 -   141584 I

a score=3324728.000000
s ce10.chrX              5102248 3203 + 17718866  
s cb4.chrX              10429969 3209 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1936331 3204 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold567     62106 3210 -   141584  
i caeSp111.Scaffold567  I 20 C 0
s caePb3.Scfld02_0       3345606 3207 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   494083 3208 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-9212.000000
s ce10.chrX              5105451 28 + 17718866 GTTCAGTGTAGAAATTTAT------ATTGAGTTA-------------
s cb4.chrX              10433178 15 + 21540570 ---------------GCAAGA----AAAAAGCTA-------------
i cb4.chrX              C 0 I 12
s caeSp111.Scaffold567     65316 26 -   141584 --------TTCAGActtatgaaatgaaaaaactc-------------
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3348813 22 +  4147112 --------caaacattttcca----aaaaacctc-------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   497291 39 +   591668 --------TTCAAATGCATAACTTAAAATTGTTTCgattaatatttt
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1939535 27 -  4500979 I

a score=516497.000000
s ce10.chrX              5105479 658 + 17718866  
s cb4.chrX              10433205 658 + 21540570  
i cb4.chrX              I 12 I 1
s caeRem4.Crem_Contig0   1939562 646 -  4500979  
i caeRem4.Crem_Contig0  I 27 I 1
s caeSp111.Scaffold567     65344 638 -   141584  
i caeSp111.Scaffold567  I 2 I 58
s caePb3.Scfld02_0       3348838 670 +  4147112  
i caePb3.Scfld02_0      I 3 I 1
s caeJap4.Scaffold17934   497330 649 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-1359.000000
s ce10.chrX              5106137 24 + 17718866 GAACTATTGTTTTATTC--------TTTTTAA
s cb4.chrX              10433864 24 + 21540570 aAAAAACGTGTTTGCAG--------TGATTTA
i cb4.chrX              I 1 I 27
s caeRem4.Crem_Contig0   1940209 24 -  4500979 GAATCATCGTTTTATAT--------TCATTCA
i caeRem4.Crem_Contig0  I 1 I 31
s caePb3.Scfld02_0       3349509 21 +  4147112 ---caaTGTGTCACTTT--------TGATTGA
i caePb3.Scfld02_0      I 1 I 11
s caeJap4.Scaffold17934   497979 32 +   591668 gaataaatatttacTTCTCCAAAGGTTTTTAA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     65982 58 -   141584 I

a score=-32976.000000
s ce10.chrX              5106161 44 + 17718866 ----------AAAAATTGCATTA--------CTGAAAATT------------------------------------------------GGAAAAAAA---ATTGAAA-------TGAAGG
s cb4.chrX              10433915 76 + 21540570 -----------AAAGATCAGAGA--------TTGAAAAACTAAGAGCAGgagatcgaaaaaaatatactaa------------------gggagagt---tttgaaa----aatccaaag
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   1940264 99 -  4500979 -----------aaaagtgagagaactAATGGTGGAATATATAGCAGCAAGACCTTGGAGATCAGTTTTTAAGAAAGAG----------GGGGAAAATAAGATTAAAAGTTTAGTAGAAAG
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold567     66040 68 -   141584 ----------AAAAATTCAGCGA---------AGCATATATGGTGAtcaga-------------aaactaaaatagaGAT--------AAGAGAAAT---ATTGAGA---------TCAG
i caeSp111.Scaffold567  I 58 C 0
s caePb3.Scfld02_0       3349541 88 +  4147112 ----------AAAAATCGAATGA---------AGC-TACAGAATAATaaaagtgagattgacagacaggaagacagagattcgaagaaaaaagaaat---cgggaga---------aaaa
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17934   498011 35 +   591668 AGAGgataataaaaattcaaaga--------ttGAAAAGAAGG-----------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 I 32

a score=-5277.000000
s ce10.chrX              5106205 44 + 17718866 AAAT--------------ATTTATACAAATAGCGT-----------------CGCTAGCAGTGCCGTTTGATAGA
s cb4.chrX              10433991 54 + 21540570 agAT--TGGAAAATGATCAATTATTGGTGTTGTAC-------------------TCAGCGTTGTTTCTTGCAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1940363 56 -  4500979 AAATAATGTAATTCGAGCACTCAAGcgttcaattt-------------------tcaatgtcGTTTCTTGGTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     66108 73 -   141584 AGAA--CGAGTGATGATCGATTATTGCAATGAAACCAAAGATGCTCGAAAGACATCAGAATTATTTCTTAGCGGC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3349629 49 +  4147112 agaa--cacggGGC-----ATCATTAAAACGTCAT-------------------TTAGCGTTGTTTCTTGTTGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498046 32 +   591668 I

a score=23333.000000
s ce10.chrX              5106249 80 + 17718866 TTTGTCCAATGCCATAGCGTGTTTCAGTTCGTCGTGTACAACGTGAAAGTCCTGAA-------------AAAAGCTAGTCT----ATGCTTTGA-------------AAG
s cb4.chrX              10434045 90 + 21540570 TTTCTCCATGACATCCGGTTGTTTGAACTCGTCgtgaacaatttgaaaatcctgaa-------------attaaattatttcaaaatatttttg-------gtagTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1940419 84 -  4500979 CTTGTCCACGGCCTCCGCTTGCTTGAACTCATCATGAACAATTTGGAAATCCTGCA-------------agaaaattct------atattttca-------acggaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     66181 91 -   141584 CTTTTCCATAGCCAACGCTTGTTTGTACTCATCATGAACAATTTGGAAATCCTAGAAAGAGTCACTTACAttcaataattca---aaattttca----------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3349678 91 +  4147112 ATTGTCCATAGTCATTGCTTGCTTGTACTCGTCGTGCACGATTTGAAAGTCCTGAA-------------ACTCAATAATT------AGTTTTCAGTTCTgtaaagagaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   498078 78 +   591668 tctttctatGGCAAGTGCTGGTTTGTACTCGTCGTGGCTGAGTTTAAAGTCCTGAA-------------AATAACAATT------ATGTTTAAA-------ATG------
i caeJap4.Scaffold17934 I 32 I 39

a score=132.000000
s ce10.chrX              5106329 44 + 17718866 AACCGGAAATTAT-------AA---------------CCAACAGTACTAAGAGAACCACCATCAGG
s cb4.chrX              10434135 46 + 21540570 TCCCATCCATAGCCAAA--------------------CTCACATCGCTAAGAGAACTGTCATCCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1940503 66 -  4500979 aacaagagacggctgaaacaaagaagaaaaagctcTCCTTACCTCACTAAGCGAGATGTCATCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     66272 31 -   141584 --------------------aa---------------ctcacTTCTCCCAAAGAGCTGTCATCAGC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3349769 48 +  4147112 gaaaaaagtttgtgaaaatTAA---------------CTAACATCGCTCAATGAGCTGCTATC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498156 39 +   591668 I

a score=63738.000000
s ce10.chrX              5106373 171 + 17718866 ATCCTCTTTCTCC------------GAAGGGTTTTGTTGAA------CAGGATTAAGAGCTGCAGCGACCAAAGCTCCAACGCCAGGAGATGCTCCCATCAACGCACCAATCGCTGTAGGGGCTGCCGCCAAAACACCAATCGTCGGAGATGAAACCACTGTGACACTACCCGGCGAGGACATCGA---TGC
s cb4.chrX              10434181 177 + 21540570 TTCTCCACCCTCC------------ATTAGTTTTACTTGAGCCTGTCCTGGCTGAAGAGCAGCAACGACCATTGCACCAACTCCTGGCGGAGCTCCCATCAAAGCTCCCATCGCTGGTGGAGCAGCAGCCAGTGCTCCGATGGTTGGCGATGTAACCATCGTGATGCTGTCAGATGAATTACGAGA---CGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1940569 171 -  4500979 ATCTCCAGAGCTC------------ATTAATGATCCCTGAG------CTGGCTGAAGAGCAGCGACGACCATGGCTCCAACACCTGGTGGAGCTCCCATCAATGCTCCCATTGCTGGTGGAGCAGCAACCAAAGCACCAATTGTTGGTGACGACACGATAGTTATGCTATCCGATGAAGACAGTGA---TGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     66303 174 -   141584 ATCAACACATTCG------------ATTGAAGGTGTCTTTG------CTGGTTGAAGAGCAGCAGCAACCATTGCTCCGACTTTTGGTGGAGCACCCATTAATGCTCCTATAGCAGGCGGTGCGGCGGCAAGTGCACCGATGGTTGGTGATGAAACGACAGTGATACCGTCAGATGACGAAAGCGACGCTGC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3349817 168 +  4147112 -TC--CGAAGTCC------------ATTGATGGAGCTTGTG------CTGGTTGAAGAGCAGCGACCACCATTGCTCCGACACCTGGTGGAGCACCCATGAGAGCTCCCATAGATGGCGGTGCAGCTGCAAGAGCACCGATAGTTGGAGAAGAGATAACAGTGATGCTGTCCGATGATGAGAGAGA---TGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   498195 177 +   591668 ATCCTCTCTTCCTCGGGACACtggggaaaaatattgatCCG------ATGGTTGAAGCGCAGAAGCGACCAGAGCTCCCATTGCAGGTGGAGCGGCTACCAAAGCGTTGCTTGGCGAAACAACTGGAGATTGAGCACCATCCACGCCAGTTGCAACCTC------GCTGCCCTGAGCCAGAATCGA---TGC
i caeJap4.Scaffold17934 I 39 I 5475

a score=127926.000000
s ce10.chrX              5106544 464 + 17718866  
s cb4.chrX              10434358 461 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1940740 491 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold567     66477 477 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3349985 464 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I

a score=-13752.000000
s ce10.chrX              5107008 59 + 17718866 TCTGGAACTGAGATTTTGTAGATTTTGGTAGACCTTTAGAAAAGGAA-------ATATTAAAATTT--------------------------------
s cb4.chrX              10434819 36 + 21540570 -----------------------------TGTTTTTTCTCCTGCAAA-------ACGgaagattgagaagat--------------------------
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold567     66954 87 -   141584 GCTGGAAAT---------AATTAAGTAATTAAATTCCGTAGAAGGAAAActaagaaacaaaaatctggagatgaaaaggag--aagaaaaatagatat
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350449 80 +  4147112 TCTGGAA-----------AACAAACTCATTG---TTTGTAACACAAGCTC----ATGTTAATTTATGGTGATGAACCTTATTCAAGAAAGCCTAACct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e caeRem4.Crem_Contig0   1941231 62 -  4500979 I

a score=8358.000000
s ce10.chrX              5107067 169 + 17718866 -------------AAAGA----AAAAGGTTCAA-----AACCAACAAAAAAAGGAACGAAATG--AAAAGAGC-----------AAT-CTGATGTTCGAACGCAGATCGCTTATTTTAGGCGGAGCTCCAGAAGG--CGGGGTCTTGTTGGTAAGAGAC--AAGGATGTCAGAAA-AAAGATGACTGGAACAAAACAAAGAGGATTTTGA
s cb4.chrX              10434857 179 + 21540570 gaagaaaggctcaaaaaacttagaaaagtacaagaaggaaaagaaaaagaaaa------------agaacagc-GCCTAAACCCAATCCCTATAACAGAACACGACTAGTCTCATCCAGGCGGAGCAAGGAAGGGGCGGGGG-CTTGCGCG-----GGTTCGGG------------AAACAGCTAGAAGGTAGACGGCGAGAAATGTTGA
i cb4.chrX              I 2 I 30
s caeRem4.Crem_Contig0   1941293 151 -  4500979 gaaaaaaag-----------------agtgcaa-----aaataagaaaagaaa------------agaacagcAGTGTAAG--CAATCCCAAT-TCTGAACAAGACTAGTCTAAACCAGGCGGAGctaaaatggg--cgggg-cttgcACG-----TGT--AAG------------ATTGAGAGAAAtagcagagaaaaagaaatattga
i caeRem4.Crem_Contig0  I 62 I 26
s caeSp111.Scaffold567     67041 156 -   141584 -------------agagacgtcaaaaagtgcga-----agatgaaagaaaaga------aacgaaagagGAAC----------TAA--CCAACATCTGAACGCGACTAGCTTAACCCAGGCGGAGCttaaatggg--cggag-ctcaCCCG-----ACC--AAGGTTGTTAGAGACAAAGAAATGGTGAGCAGAAAAAGGAG--------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350529 154 +  4147112 -------------ag-------aaaaagtgcaa-----aaaatgaaaagaaga------aatg--aggggAGC----------CAAG-ACACCGTTTGAACAAGGCAAGCCGAATCCAGGCGGAGCTttaagggg--cggag-cttgcaCG-----GGT--AAGgcca-aagaga-aaagagagaaacagcaaaataaagaaaatatcGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I

a score=-7376.000000
s ce10.chrX              5107236 34 + 17718866 GATTTTAT-TCAG--------AAAAA------ATATGA--ACAATTGGCAA--
s caeRem4.Crem_Contig0   1941470 51 -  4500979 -Atatcaa-atggaaaaaaatggaaaaggacAAGAGGATGATATCTGATGGAA
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold567     67197 38 -   141584 -----CAG-TCAG--------AGAAACAGGCCACACGTTAAAATCTTAGAAA-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350683 38 +  4147112 ----CCAGTTCCG--------GGAGACAGGTTTTatgt--aaaacagaaaaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e cb4.chrX              10435036 30 + 21540570 I

a score=-20450.000000
s ce10.chrX              5107270 64 + 17718866 -----------CAGGA------ATTATTATTGAA---TTT-----TTGAAA-----------ACAATATAAAACAAAATCGTGACAATCACCACGTAAAA--
s cb4.chrX              10435066 54 + 21540570 -----------CAGGAAGTAGGTtaaat---gaa---ttt-----ctgaaaactt-------caaatagaagatga-----------------cagaaga--
i cb4.chrX              I 30 I 1
s caeRem4.Crem_Contig0   1941521 67 -  4500979 -----------CATAAATT---TTAAACCTAGAA---TTTGGTCGTAGCAAAAGG-------AAAACAGAACCTAAGACCgc---------ttcacaaaa--
i caeRem4.Crem_Contig0  C 0 I 22
s caeSp111.Scaffold567     67235 59 -   141584 T---------CTAGAG--------AAATATAGAA---TGG-----TCGacgaatg-------aagaaaaaggttcAAACCAT-----------CAGGAATAa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350721 76 +  4147112 taggagTATAAGATAA--------GAGTGTCGGAACCTTT-----ACGCCAAAcgttctgaaatgaaaaacgtcAAAA--GT-----------TATCAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I

a score=-6381.000000
s ce10.chrX              5107334 32 + 17718866 TGAATATTCTTGAATTACTGA------------ATTACATACCT
s cb4.chrX              10435121  4 + 21540570 -----------------taaa-----------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold567     67294  6 -   141584 ---------------tgttca-----------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350797 18 +  4147112 ---------------TGCTCATCTTGCCTCTTT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e caeRem4.Crem_Contig0   1941588 22 -  4500979 I

a score=73722.000000
s ce10.chrX              5107366 221 + 17718866 -TAAGCAAAAAATGCACA-ATTGTCATGGCAAAAAGCGA-GTAGTGTCG---AAATCTTTTCAACTAGAAAAATTGATT-ACAGA-AACAGTCAGGCATGAGAGATTAATGAG--AATCTGTGTACCTGC------ACGATAGTCC--------------------ACAATGCTTGTGTCATAGAAACGTGTATGAGTTGAA-----GTTCTTTTGACAAAAGAAG---GGATAAAAAATAATGCATGCAAGGATTAGAAAAAAA---------
s cb4.chrX              10435125 252 + 21540570 -aaagagaaaatagaaga-----cgaaaaagaaaagtga-gaaaagtttctaaaaCTTCTCCGAGTGGAATAATTGATTAACAGAGAACAGTCAAGCAAAAGAGATTAATGAG--AA--GATGTACCTGCTGCCCTTTTTCAGCTCTATCTTCCTCTCTTTCTAGAACTCTGTCTATGTCATAGAAACGTGTATGAGTcgaaagttctttttttcgaaaaaagaga--gggatgaaaaataatgcatgaggagattatgagagga---------
i cb4.chrX              C 0 I 659
s caeRem4.Crem_Contig0   1941610 218 -  4500979 -aaagaagaagaggaaaa-gttgCTAAGATGAGCTGTGA-GACGCGTC----GGATGATTCGAAGTGGAA-AATTGATT-ATAGA-AACGGTCAGGCATAAGAAATTAATGAG--A----ATGTACCTGC------ACATCGGTTC--------------------AAACTGCTTATGTCATAGAAACGTGTATGAGTTGAa-----ctacttttgaaaaaagaaacggggatgaaaaataatgaatgagGGGATTATGAGGGAA---------
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold567     67300 229 -   141584 aaagaaaaaggaggaaga-gtTTCCGAGATGACATGCAAGAAGACGTTTT--TGACCCTTTGAAGTGGAA-AATTAATA---CGAAGACAGTCGGGCATGAAATATTAATGAG--A----ATGTACCTGC------ACATCAGTTC--------------------ACACTGCTTATGTCATAGAAACGTGTATGAGTTGAA-----GTTTACTtgacaaaagaaa-agggatGAGAACTAATGCATGAAGGGATTATGAGGGAAAAAATTCTA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3350815 229 +  4147112 GgagaagtgaaaagaagacatttttcaaatgagctACAA-AGGACACTAT--CGGCTCTTTGAAGTGGAA-AATTGATA-----AGGACAGTCAGGCATAAAATATTGATGAGATA----ATGTACCTGC------GCCTCTGTTC--------------------AAACTGCTTATGTCATAGAAACGTGTATGAGTTGAA-----GTTTTTTCGACAAAAGAAA-AGggatgaaaaataatgaatgagGGGATTATGTGGAAAAAAGTGCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   498372 5475 +   591668 I

a score=-12967.000000
s ce10.chrX              5107587 303 + 17718866 --------TCTGTCCTGCCAATCTTCT---TTTTTGGTGGAAAAAACT----------TCTTCGAGGAGCACTTTTTTGTGCACTAA------------------TATATTGACGAAAGAATT----GAAAGGACACAACACTTGCAAAACATTTTTTTCAGATTGTGAGTACTTACATTGAATACAAGGAACCTAATTCGGGTCTCTTCTACATATTAATAAAATTGACTGGTTTCATTGGAA--TTG--CCTAGGATTGCTTGTATAGCAATAAAGAAAAAGTGATTTTGTAATATT-GCCATTTCGTGTCTGATT---TAATGCATTGCAGGAAT---TGGCCTTGTCTTTTTA
s caeRem4.Crem_Contig0   1941828 319 -  4500979 AACGTCTATCTGCTCCTCTTATTCCGTGCAAACGTTCTCCAAAAAAGTACACGTTCAACGTTCAGACAT-----ATGAATAGAAAGGCACTGCTGCCTGAAGGCGAACAATGAGATGAGATTT----CAATTAAACCGATTCTTTGAAAAa-----------gattcaatttctttcaaagAATTC----------------CCGTCAGATTCGTCCCACTCATGTGAAACCATTTCAGAGCGAATTGG--TGTGGGCATCGCTGTATAGCAATAAGAACAAATTGTTCTTGTATAATTAGACGTTTTATGTCTTTTTTCCTGAAGAATTTTAAAAGGAGATGGGTTCTCGTTTCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     67529 284 -   141584 --------TCCGCTCATCTGAACTCCT---AACTTTCAAGTGAAAG------------TTTTCAGGGAG-----TGCATTCGATAAA---TTCTGactaaaaac-aagaaaattgtaagaattatg-aaattgaTATTGAATTTGGGAATTCAAAAT----GGTTATGAGTTCCGgaaattaattg----------ttttctttcgc----ACGTCACA------------CTTCTCGTTTCA---TTGGACGTTGGCTCAATAGTATAGCAATAAAGA-AATGTGATTTGAGAATATTAGCCTTTTCATGTCTCATT---TAATGGATTTTTAAGAT---TGGttccctttttccc
i caeSp111.Scaffold567  C 0 I 5
s caePb3.Scfld02_0       3351044 277 +  4147112 --------TCTGCTCCTCAAAAGTTTT----ACTTCCTAGCAAAGAGT----------TCTTGAAGGAG-----TTCAGCAGTAAAA-------GGGTTCAAAC-CACAATTTCGCAATATTTTTGCGAATAAAACTTAAAGATGGGAAAACGAC-------GTTCTGAATC-----AATGAATCG------------------AGCAAAAACGTCACA--TAAGTTGGGtcgtttcatttcaatttggaAGGGAGGCTCAATTGTATAGCAATAAA-A-AAGGcgttttcggaaaattagGCTTTTTATGTC--------AAAATGGTTGCCAAGAt---tgaattcttgttttta
i caePb3.Scfld02_0      C 0 I 556
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e cb4.chrX              10435377 659 + 21540570 I

a score=-1015.000000
s ce10.chrX              5107890 135 + 17718866 GAGTCTTAATGGGTTGGTG---------CAAAAATGAGCTCTAGAATTTCCTTGTTTTAATTTTTAGTTTTCGGAATACAAAAATCATCATGGAATTTGAAATGGAATCTCTTGAGCGTACACCATTGCTCTCACG--GTGAGttt
s caeRem4.Crem_Contig0   1942147 126 -  4500979 TCAACTTAATAGGATAGTGTCACTATCCCAGAAATATTGTTCtgtgttgttttcaaatatttttagaatttcggATTATGGAATTGaccagt------------------tttgaaaaaattccttTG--ATCAAATGGTGAGTTT
i caeRem4.Crem_Contig0  C 0 I 427
s caeSp111.Scaffold567     67818 111 -   141584 -----------ggGTTGTGATGTTGTGAGACAGAATTCTTTTCGTATCGGACAacatttattctgaaat----ggaCATAGAAATGAACGAG------------------TTTGAACGGCAACCTCTGCTatcaaa--gtgagttt
i caeSp111.Scaffold567  I 5 C 0
e caePb3.Scfld02_0       3351321 556 +  4147112 I
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e cb4.chrX              10435377 659 + 21540570 I

a score=91.000000
s ce10.chrX              5108025 1 + 17718866 t
s caeSp111.Scaffold567     67929 1 -   141584 t
i caeSp111.Scaffold567  C 0 I 402
e caePb3.Scfld02_0       3351321 556 +  4147112 I
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e cb4.chrX              10435377 659 + 21540570 I
e caeRem4.Crem_Contig0   1942273 427 -  4500979 I

a score=0.000000
s ce10.chrX              5108026 1188 + 17718866  
e caePb3.Scfld02_0       3351321  556 +  4147112 I
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e cb4.chrX              10435377  659 + 21540570 I
e caeSp111.Scaffold567     67930  402 -   141584 I
e caeRem4.Crem_Contig0   1942273  427 -  4500979 I

a score=310.000000
s ce10.chrX              5109214 7 + 17718866 AAATTAT
s cb4.chrX              10436036 7 + 21540570 aaatcag
i cb4.chrX              I 659 C 0
e caePb3.Scfld02_0       3351321 556 +  4147112 I
e caeJap4.Scaffold17934   498372 5475 +   591668 I
e caeSp111.Scaffold567     67930 402 -   141584 I
e caeRem4.Crem_Contig0   1942273 427 -  4500979 I

a score=348.000000
s ce10.chrX              5109221 6 + 17718866 TTGATT
s cb4.chrX              10436043 6 + 21540570 atGGTG
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   503847 6 +   591668 TTGGCT
i caeJap4.Scaffold17934 I 5475 C 0
e caePb3.Scfld02_0       3351321 556 +  4147112 I
e caeSp111.Scaffold567     67930 402 -   141584 I
e caeRem4.Crem_Contig0   1942273 427 -  4500979 I

a score=122290.000000
s ce10.chrX              5109227 160 + 17718866 GAAATTTTTACAACCAGAAACATAAACACACAACGCTAATCACTAGACAAACA--ACCTTT----TTATTG--AAAGGTGGCTACCAAATTATCGGCCATTAAGGAATCGATGAGCGATAATAGTACTGC-----AC--TA--GGAATTATCATGATAAGAAACAGAACTTCTAAT---T
s cb4.chrX              10436049 173 + 21540570 --GAGTTTTACAGCCAGAAACATCAACACAGTGCGCTAATCATTATACAAACATGGCCGTTTTTATTAAC---AAGAGATGCTACCAAATTATCGGTCATTAAAGAATCAATAAAAGATAATAGTGCTGCAATAAAC--AAGGGGAATTATAGAGATAAGAAACAGAACTTCTAATTCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1942700 157 -  4500979 GAAAGTTGTACAACCAGAAACATCAACACG--ACGCTAATCACTAGACAAACA--ACTGTT----TTATT---GAAAGGGGCTACCAAATTATCGGTCATTAAAGAATCAATAAACGATAATAGTGCTGC-----AC--AA--GGAATTAGGGCGATAAGAAACAGAACTTCTAAT---T
i caeRem4.Crem_Contig0  I 427 C 0
s caeSp111.Scaffold567     68332 163 -   141584 GGAAATTTTACAACCAGAAACATCAACACA--ACGCTAATCATTAGACAAACAC-GGGGTT----TTATTGAAGAGGAGGGCTACCAAATTATCAGCCATTAAAGAATCAATAAACGATAATAGAGCTGC-----ACTGAG--GGAATTATTGTGATAAGGAACAGAACTTCTAAT---T
i caeSp111.Scaffold567  I 402 C 0
s caePb3.Scfld02_0       3351877 158 +  4147112 GGAAATTATACAACCAGAAACATCAACACA--ACGCTAATCATTAGACAAACA--ATGGTT----TTATTG--GAAGGGGGCTACCAAATTATCAGTCATTAAAGAATCAATAAACGATAATACTGCTAC-----AC--AG--GGTATTAAAACGATAAGAAACAGAACTTCTAAT---T
i caePb3.Scfld02_0      I 556 C 0
s caeJap4.Scaffold17934   503853 152 +   591668 GAAAATTGTGCAATCAGAAACACAAACAAG--ATGCTAATCGCAAGACAAACAAAACACTT----TTATTG----AGGGGGCTACCACTTAATCAGCTATTATGGAATCATTAAAAGATAATAGTGCTTC-----AC--TG--GAAAT------GATAAGACAAATAATTTCCAAT---T
i caeJap4.Scaffold17934 C 0 I 297

a score=22344.000000
s ce10.chrX              5109387 51 + 17718866 CCCTCCTCCATGATCATATTGATTCACACT---TTT--------------TGG-TTATTATGAAACA------------------AT
s cb4.chrX              10436222 86 + 21540570 CCCT-CTCAACAATCATATTGATTCAAAGTCAATTTCAATATGCCATCTGTCGCTTATTATGAAACTCTCCTGACTatatgttttaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1942857 81 -  4500979 CCCT-TTCAATAATCATATtgattcaaact---tttcacTATGACATTT-TCA-TTGTTATGAAACTGCACAACACTTTtattatac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     68495 73 -   141584 -CCT-TTCAATAATCATATTGattcaaact---tttcattaTGACAGTC-TTA-TTATTATGAAACTCTCCACCTTTC-------AC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3352035 73 +  4147112 CCCT-TTCAATAATCATATTGATTCAAACT---TTCCATTATGACAGTC-GTA-TTATTGTGAAACTTTCCAACATTT--------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   504005 297 +   591668 I

a score=52932.000000
s ce10.chrX              5109438 145 + 17718866 A------------------GTCTTAGT-TTTCAATTGTAATATTT----TTT---ATTTA-----AGAACCATGTCGATGTATGGCAAAGACAAGGCGTATATCGAGAATGAGACAAAGTTTCGAGCAGACAGAGATTACTTGAGCCAGCCTGTCTATCAACAAACTGTCTATCGA
s cb4.chrX              10436308 167 + 21540570 a-ttttttactttctgtcaaatttaat-ttttacccctttcattt----agt---tttttttagaatcatgGCCTCCATGTACGGTAAGGACAAGGCCTATATTGAAAATGAGCAGAGGTTCCGTGCGAGTCGAGACTATCTAAGCTCCCCCATGTACCAACAGACTGTCTATAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1942938 166 -  4500979 atttttttaaattat----aattttat-ttataaatccacaaatt----cat-aatttcagtgGGACCAACATGTCAATGTATGGTAAGGACAAAGCCTTCattgagaatgaaaagaaattccGACCGAGTCGAGACTACTTGAGTTCTCCCATATACAACGAAACCGTCTACCGA
i caeRem4.Crem_Contig0  C 0 I 445
s caeSp111.Scaffold567     68568 152 -   141584 T------------------ATTTCAATCTATTGATC--ACCATTC----AATCTCTTACAGCAGCAACGCCATGTCGATGTATGGCAAAGACAAGGCAtacattgaaaatgagcaacGGTTCCGAAGAGATAGAGATTACTTAGCTGCTCCAGTCTATAATGAAACAGTCTACCAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3352108 150 +  4147112 A------------------AGTTCAGT-TATCGATTCGAAAGTCC----AGT---TTTCAGCCGGAAAACCATGTCCATGTACGGCAAGGATAAGGCTTTTATCGAGAATGAGCAACGGTTTCGTCGTGATAGAGACTATCTCACCGCCCCTGTGTACAACGAGCCGGTCTATCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   504302 146 +   591668 ------------------aatattagt-tctttaa---aatatttgaaatat---tttcc-----agaaaaatgtcaATGTTTGGCAAGGACAAAGCGTTCATTGAGAACGAGCAGCGTTTTCGTCGCGACCGTGACTATCTGACTTCTCCAGTATATCATGAAACTGTCTATCAA
i caeJap4.Scaffold17934 I 297 I 549

a score=-1401.000000
s ce10.chrX              5109583 16 + 17718866 GAAGGC--------CCA---ATTTTGA
s cb4.chrX              10436475 16 + 21540570 -----C---CTGCACCG---ATTCTAA
i cb4.chrX              C 0 I 307
s caeSp111.Scaffold567     68720 22 -   141584 -----CAAGCTCCGCCACTTATAAAGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3352258 16 +  4147112 -----C---CTCCGCTA---ATCCAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   504448 549 +   591668 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=50.000000
s ce10.chrX              5109599 37 + 17718866 AACCAGATGTAGAGGTAAGTATA------AATATGCTATTT------------TC
s caeSp111.Scaffold567     68742 32 -   141584 AACCC---TCAGAGGTTAGTT--------TATTTGATATTA------------TC
i caeSp111.Scaffold567  C 0 I 422
s caePb3.Scfld02_0       3352274 55 +  4147112 AACCCGTTCCGGAGGTAAGCTTTTAGCGGTATTTGTTATGAAAATTGctcttttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   504448 549 +   591668 I
e cb4.chrX              10436491 307 + 21540570 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=142.000000
s ce10.chrX              5109636 16 + 17718866 ACTTTAATCCTTTTCA
s caePb3.Scfld02_0       3352329 11 +  4147112 c-----attcttttca
i caePb3.Scfld02_0      C 0 I 76
e caeJap4.Scaffold17934   504448 549 +   591668 I
e cb4.chrX              10436491 307 + 21540570 I
e caeSp111.Scaffold567     68774 422 -   141584 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=0.000000
s ce10.chrX              5109652 142 + 17718866 ACAAATTTTAATAGCGAGTCAGAATATCGAGAAAAAACTAATATTTGCTAAAACCTTAAATTTTGTCAAATTTTCCAAAAAAAAAACTTTCAAGTCAGAAATGAAAGAACAAACCTTTTTTGGTAAATTTACTGAAAATTAA
e caePb3.Scfld02_0       3352340  76 +  4147112 I
e caeJap4.Scaffold17934   504448 549 +   591668 I
e cb4.chrX              10436491 307 + 21540570 I
e caeSp111.Scaffold567     68774 422 -   141584 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=-3664.000000
s ce10.chrX              5109794 574 + 17718866  
s caePb3.Scfld02_0       3352416 580 +  4147112  
i caePb3.Scfld02_0      I 76 C 0
e caeJap4.Scaffold17934   504448 549 +   591668 I
e cb4.chrX              10436491 307 + 21540570 I
e caeSp111.Scaffold567     68774 422 -   141584 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=-2088.000000
s ce10.chrX              5110368 53 + 17718866 GAAAAT---TATAGGGAT--------------------GCGAA-CACAAAAATAAAATCAGATTTGAAGC-----------TTCCGGG
s cb4.chrX              10436798 66 + 21540570 GAAAAT---TATAAGGGTT-------------------GAGAATTGCCAGCTACTGTAAAGGGATGAAGGACCggatttgatttttgt
i cb4.chrX              I 307 C 0
s caePb3.Scfld02_0       3352996 88 +  4147112 GAAAATTGATacaaagctttttttctcattgtttttacgagaatcataaattttttttcatgtctgAAACACTGTAACGCATTCCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   504448 549 +   591668 I
e caeSp111.Scaffold567     68774 422 -   141584 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=-2367.000000
s ce10.chrX              5110421 10 + 17718866 AATAAAACCA------
s cb4.chrX              10436864 10 + 21540570 tctAGGAAAA------
i cb4.chrX              C 0 I 10
s caePb3.Scfld02_0       3353084 10 +  4147112 ATTATTGATA------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   504997 10 +   591668 ------aataattttt
i caeJap4.Scaffold17934 I 549 C 0
e caeSp111.Scaffold567     68774 422 -   141584 I
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=1943.000000
s ce10.chrX              5110431 4 + 17718866 AAAA
s cb4.chrX              10436884 4 + 21540570 AATA
i cb4.chrX              I 10 I 1
s caeSp111.Scaffold567     69196 4 -   141584 AAAA
i caeSp111.Scaffold567  I 422 C 0
s caePb3.Scfld02_0       3353099 3 +  4147112 -AGA
i caePb3.Scfld02_0      I 5 I 18
s caeJap4.Scaffold17934   505007 4 +   591668 aaaa
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1943104 445 -  4500979 I

a score=159393.000000
s ce10.chrX              5110435 244 + 17718866 TTTCAGGTTTCAGTGGTAGACGTTGAACCCGTCGAGTGTACTCCTCACATGTGGGGTCATCCGATGGGACTTTTGAGGTGGTTCCAATTGGTATGGTT------ATTTGAGGAAATGTAGAAATTGGGAGAAATCGGAAAGT---TTTACAGCTCATGTTTTTTGTGCTTCAATGGCTGGTGCAGATCACTTGCGGAGGGGATGCATGCACCATGATTATGAATGTTTTTGGATATACTGCCATGGGGCAGGT
s cb4.chrX              10436889 235 + 21540570 TTGCAGGCTGAAGTGATGGAGACGGAGCCGGTGGAGTGTACACCAAACATGTGGGGACATCCAATGGGACTTCTTCGATGGTTTCAGTTGGTTTGGG-------ACCTTCGAtgattcattca-------aaaatcaga-aa---tttccaggTCATGTTTTTCGTACTTCAGTGGCTGGTACAAATCACATGTGGTGGAGATGCGTGTACAATGATCATGAATGTCTTTGGTTATACTGCGATGGGACAAGT
i cb4.chrX              I 1 I 44
s caeRem4.Crem_Contig0   1943549 238 -  4500979 TTTCAGGTTGAAGTGATCGAAACGGAGCAAGTGGAATGCACACCAAATATGTGGGGTCATCCGATGGGACTTCTCAGATGGTTCCAGTTGGTAGGGATC-----ACTTCAGAGAAGGGaataa-------atattcagattt---ttttcagctcatgtTCTTTGTTCTACAGTGGCTTGTACAAATAACTTGTGGAGGAGATGCCTGCACAATGATAATGAATGTGTTCGGATACACTGCTATGGGAcaggt
i caeRem4.Crem_Contig0  I 445 C 0
s caeSp111.Scaffold567     69200 235 -   141584 TTTCAGGTAGAAGTAATTGAACTTGAGCCTGTGGAATGTACACCGCATATGTGGGGACATCCGATGGGACTTCTCCGGTGGTTCCAGTTGGTAAGGTCA-----ATCTCTGGTGATCTGATA----------TGCAGAACAT---TTTGCAGTTGATGTTCTTCGTTCTCCAGTGGCTTGTCCAAATCACTTGTGGCGGTGACGCATGTACAATGATAATGAATGTATTTGGATACACTGCTATGGGACAAGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3353120 238 +  4147112 tttcaggttgaagTGATTGAAGTTGAGCCAGTAGAATGTACACCCAATATGTGGGGACATCCGATGGGACTTCTGCGATGGTTCCAATTGGTATACTTA--------TTTTGCAGTTTGAAAA-------CTTGTAACAAATATGTTTTCAGCTAATGTTTTTTGTGCTACAATGGTTAGTACAAATTACTTGCGGCGGAGATGCATGCACTATGATTATGAATGTTTTTGGATACACTGCCATGGGACAGGT
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17934   505011 242 +   591668 ttttaggtAGCAGT------CGTGGAACCCGTAGAATGCACTCCACACATGTGGGCTCATCCAATGGGCTTGCTAAGGTGGTTTGAACTGGTAAGCCTTCAAAATCCTTGAAACATGTAGAAATACCA--ATATCAATGTTT---CTTCCAGGTGATGTTTTTCGTTCTTCAATGGTTGGTACAGATTACTTGCGGTGGGGACGCTTGCACAATGATTATGAACGTTTTTGGCTACACTGCAATGGGGCAGGT
i caeJap4.Scaffold17934 C 0 C 0

a score=-11966.000000
s ce10.chrX              5110679 48 + 17718866 AAGCCAATGCTT------TTTCGGCTCTCTAAGAGTAAAAAAAGTATAACTTTC--------
s caeRem4.Crem_Contig0   1943787 41 -  4500979 ----------ttaaaaaatttcaattgaaaaaaagaaaaaa---aatgacgttA--------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold567     69435 36 -   141584 ----------CTGTCCTATttcacaacaaaaaagtt--------taaaacattt--------
i caeSp111.Scaffold567  C 0 I 3
s caePb3.Scfld02_0       3353358 35 +  4147112 ----------TT------TGGCAGAGCTTTAACATTGGcca---tataaatttt--------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17934   505253 43 +   591668 ----------------AATTTCAGAAATattttggtttcac---tgtaattttgggtatttt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10437124 44 + 21540570 I

a score=89193.000000
s ce10.chrX              5110727 115 + 17718866 CAGCTCTTTGTGCTGGTAATATTCCTTGGACTATCTATGTTTTGTGGTGTCATCATCCTTCTTTTCGCTCTTAACGCTCATCGTTGCATTCCATCCATCATCATCGCACTGGTAA
s cb4.chrX              10437168 115 + 21540570 cagcTCTTTGTTCTTGTGATCTTCCTCGGACTCTCCATATTTTGTGCACTAATTCTTCTGGGATTCGCTTTGAACGCTCATCGTTGGATTCCTCATGTCATCATACCAATGGTGA
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   1943832 115 -  4500979 CAGTTATTCGTCCTTGTGATCTTCCTTGGACTCTCTATTTTCTGTGGAATTATCTTGCTCGCATTCGTTTTGAACGCTCATCGTTGGATCCCATCTATCATCATCTCATTGGTAG
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold567     69474 115 -   141584 cagctctttGTGCTAGTCATCTTCCTCGGACTTTCGATGTTCTGTGCAATCATTCTCCTCGGTTTTGTTCTGAATGCTCATCGTTGGATCCCATCTATCATCATCCCATTGGTAA
i caeSp111.Scaffold567  I 3 C 0
s caePb3.Scfld02_0       3353396 115 +  4147112 cagctttttgtatTGGTGATTTTCCTTGGGCTATCACTGTTCTGCGGAATCATTTTGCTTGCCTTCGTTCTGAATGCTCATCGATGTATTCCATCTATCATCATCCCTCTGGTAG
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   505296 115 +   591668 cagctttttgttcttgtcatttttcTAGGATTGTCACTTTTCTGCGGAATTATTCTTGTGGCGTTTGTTCTCAATGCTCAtcgttctattccgaacataATCATTCCTTTGGTAA
i caeJap4.Scaffold17934 C 0 I 44

a score=-19190.000000
s ce10.chrX              5110842  43 + 17718866 AGT----------------------------------TTTTTACAACTCACT------------------AAAAACCT-------GATCGTCCG--------------------------AAATGGAA
s cb4.chrX              10437283  70 + 21540570 GT----------------------------TCTAGA-CTTGCTCTTCTTTTT---------------GAACAAAGGGT-------GATTACCCCGTTCGCTA-------ATTGTTATGCATAGGAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1943947 126 -  4500979 GTCTACTCATTCCACGTCATACATTCGTTCtctaaattttaattttctaattAGTATtcatgga--agaaaaaaggctATGTATAAATTTACTGGGACGCAAAAAACCGATTGACCTACAGcgtaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     69589  93 -   141584 GTG--TTTGTGCCTT--------------------A-TACTCACActcaaattttattcatg----agaaaaaaggctaTGTATAAATTGTCTC--------TCATCCGATTGACCTACCGTGTTCAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3353511 110 +  4147112 GTTTCTCTGTGCCACGTCAGA---------TTGAGA-CCCCCACGCCCAATTATTATTCATAGAACGGGGGAAGAGCTATGTATAAATTGTCTT--------CAAACCGATTGACCTACACCGtgaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   505411  44 +   591668 I

a score=223396.000000
s ce10.chrX              5110885 470 + 17718866  
s cb4.chrX              10437353 444 + 21540570  
i cb4.chrX              C 0 I 934
s caeRem4.Crem_Contig0   1944073 467 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     69682 467 -   141584  
i caeSp111.Scaffold567  C 0 I 5
s caePb3.Scfld02_0       3353621 467 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold17934   505455 494 +   591668  
i caeJap4.Scaffold17934 I 44 C 0

a score=-7910.000000
s ce10.chrX              5111355 29 + 17718866 TAGCATAGGT--GCAGATTAC--AGCATGAAAT
s caeRem4.Crem_Contig0   1944540 18 -  4500979 ---------T--GGGGTTTAT--GAcgcgaa--
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold567     70154 19 -   141584 ------------AGATGTTGT--GATGAAAAGC
i caeSp111.Scaffold567  I 5 I 9
s caePb3.Scfld02_0       3354093 24 +  4147112 ---------ctgaaaaGTTGTTCGACTTGAAAC
i caePb3.Scfld02_0      I 5 I 9
s caeJap4.Scaffold17934   505949 13 +   591668 ------------aaaattggt--tgtT------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10437797 934 + 21540570 I

a score=56512.000000
s ce10.chrX              5111384 78 + 17718866 T--TTTCAGAACTATCCCTTCACTGGAAAGGAATACAAAACCG------TCCCGTCACAGCAAACGGTAGGTTAAACTAACTTTTG-
s cb4.chrX              10438731 70 + 21540570 t--tttcagaactatcCCTTCACTGGAAAGGAATACAAAACCG------TCCCATTACAACAAACGGTAAg--------acttttg-
i cb4.chrX              I 934 I 16
s caeRem4.Crem_Contig0   1944569 71 -  4500979 t--tttcagaattatccCTTCACTGGAAAGGAATACAAAACCG------TCCAATCACGGCAAATGGTTTG------TAGTTTTT--
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold567     70182 66 -   141584 ttatttcagaactATCCCTTCACTGGAAAGGAATACAAAACCG------GCCAATCACTGCAAACGGTGAG--------A-------
i caeSp111.Scaffold567  I 9 I 9
s caePb3.Scfld02_0       3354126 68 +  4147112 t--tttcagaactatcCCTTCACTGGAAAGGAATACAAAACCG------TCCCATCACAGCAAAGGGTAAG--------ATTTT---
i caePb3.Scfld02_0      I 9 I 8
s caeJap4.Scaffold17934   505962 83 +   591668 T--TTTCAGAACTATCCCTTCACTGGAAAGGAATACAAAATCGACAGAACCAGAACCCAACAAACGGTAAA--ATACATATATCTGG
i caeJap4.Scaffold17934 C 0 C 0

a score=-15333.000000
s ce10.chrX              5111462 58 + 17718866 ---------TGGGAATATTTATGA----GAAAATGTCATGAAAAAAACTAGAAAGGATTTAATTACATTTG
s caeRem4.Crem_Contig0   1944640 34 -  4500979 ---------------TATTGCTTT-------ACTTGtgtctgaaaagt--------------ttaaaGCG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70257 46 -   141584 ----------aagagaaatttttgaagcaaaaaCGGTTTGAAATGAAC--------------CCATGTGA-
i caeSp111.Scaffold567  I 9 C 0
s caePb3.Scfld02_0       3354202 43 +  4147112 ----------GAGTCAATTGTTTG-----AAAGTGTTGTATCGTCAGCT-------------TCATATCGA
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17934   506045 55 +   591668 CGAGTAAACCaagtttaaaatttc-----aaaatttcagaaaacgaGTTCA-----------TTACGTTCG
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10438801 16 + 21540570 I

a score=-12528.000000
s ce10.chrX              5111520 110 + 17718866 AATTTCCGCGCAAAATTTCAAATCTCTTTTTACAAAACACAGTTTAAACTTATGATAAGTGGTAATAGTTTTCTTTCCGGAAAGTGTTTGAAAGTTTGAC--AAATAAAGTT
s caeRem4.Crem_Contig0   1944674  78 -  4500979 ------------------TTTCTTCCGTAAGAGCGAAAACAAGTTGCATTT----TTAgtttcagtagttttttttcctg------------attttaaGCCAAATTGTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70303  61 -   141584 ------------------TAACTTTTGAAGCGTGGATGTCAACT--------------GAAACGAAA-----CGTTCTca------------agtctgaa--aatttgaatt
i caeSp111.Scaffold567  C 0 I 44
s caePb3.Scfld02_0       3354245  68 +  4147112 AAT------------ACTTAACTTTTGTCTTATTTAAGACACCTCTATGCT----TCAGATACCA--------GTTC---------------AGTAT-----AATTTTGTTT
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17934   506100   0 +   591668 C
e cb4.chrX              10438801  16 + 21540570 I

a score=-7757.000000
s ce10.chrX              5111630 105 + 17718866 ATGAGGCTAAGAAAAAAACATACTAGAAAAATCAATAATTGTTTTT------------------GCCACAAAATGCAATAATGTAGATTTGAGTGGaaatttaaaaataatttgaaaatttat--
s caeRem4.Crem_Contig0   1944752  19 -  4500979 ATGAGATT------------------------------TCATTTTC------------------GCT----------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3354318 109 +  4147112 ATGGGGTTTATCGGAGATTGTAGTCGgaa----tttgatcattttttgttggtgagAAGCGGAAGCTATG---------GATGCCGATTAGA---GGTTTCACAACATACTGTCTAACATTTTCC
i caePb3.Scfld02_0      I 5 I 46
e caeJap4.Scaffold17934   506100   0 +   591668 C
e cb4.chrX              10438801  16 + 21540570 I
e caeSp111.Scaffold567     70364  44 -   141584 I

a score=-8762.000000
s ce10.chrX              5111735 90 + 17718866 aGCTTACCTGCAAAGTTGATAATAAATCATTTAGAATTTTAGA-ACAACT---CTATACATTTTTCAATTATTCTTGATATATTAAGACTGTTT
s caeRem4.Crem_Contig0   1944771 39 -  4500979 ------------------GTTTATCATTACtgca--tt------tcattttcactct--ATTATTGA---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70408 74 -   141584 AGTTTagcttcaa-----tttttaaatgagcAAAGATT------ACATCT---CTAT--ATATTCCAATCTTAC----TAGCCTAGTagtattt
i caeSp111.Scaffold567  I 44 C 0
s caePb3.Scfld02_0       3354473 72 +  4147112 AATCAACATTCAA-----GTATAAAATTAgtaaaacttcgaaaaacatttgaactaT--GAAATTTAATCAAAC---------------TCTTT
i caePb3.Scfld02_0      I 46 I 59
e caeJap4.Scaffold17934   506100  0 +   591668 C
e cb4.chrX              10438801 16 + 21540570 I

a score=-4135.000000
s ce10.chrX              5111825 53 + 17718866 ACTGTCATTTAAGCCAAAAACCTACAGAACCTACCCCCATTTTAAAGTATAGT
s caeRem4.Crem_Contig0   1944810 33 -  4500979 ------GTTAAATTCAAcattcttcgaaa---------atttttgaag-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70482 17 -   141584 ------------ttttatatttt---------------gtcTCC---------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3354545 59 +  4147112 I
e caeJap4.Scaffold17934   506100  0 +   591668 C
e cb4.chrX              10438801 16 + 21540570 I

a score=-34334.000000
s ce10.chrX              5111878 282 + 17718866 ----TATTCCCAAAAATGATGT-TTTTTTAAATTCTTTTAAATGCTTAATTATAATAGACAATCTGT-----TAAATCATCAATTTTTAAGAAGCGACGTAACATTTTTTTGGACT-TTG-----GCTTTAAATGGTCATTTTGTG------------ACTGTAAAACCCATATCGATGTTTTAAATCTTTCTGATCAC-------AATTATAGAT-TTGACGTCATATTTAACGTTTTAATGTTTTGTTTTCATTTAAACTCATAACCTCTAAAGTGGTTATGACCGGGAGATTGTTTTT-----------TTTTCTAAATTTACAAA
s caeRem4.Crem_Contig0   1944843 118 -  4500979 -----------------gatGT-------------------------------CATAG----TTTAT-----TGgatgacaaa------------------------ttttgaactgatttttaaagtttaggtatgcattttttg------------a-----------------------------cttctgTTTACTGA----AAACGTTCCT--------------------------------------TCTCAACTC-TG----------------TGACC--AAGATCTGTTCT----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70499 134 -   141584 ------TGACTGAATATAATTT----------------------------GTTTCTAG----TCTGT-----TGGAGCTgagat-------aa--------------ttttgaattaatc-----atttcttaaaaatattttgtgtTGCCCGGAAGTAA-----------------------AAAACATTTCGGTTAC-------AAGTGTATGT-------------------------------------ATATCAATTC-TA------------------------------ACTCT----------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3354604 258 +  4147112 GATTTGcaactgaa-ataatttttccaatgcATTTTCTTGGAATGTTTACTTTTCTAG--CATTTGTAAtgatcgaacaaaaaa-------aaac----caatactGTTCTGAATT-ATT-----GGTTCAAACAATCATactatg------------aa-----------------------aatttattccgGTTATTGAATTGGAATGAATGTgaagaaattattcaaaaca-----------tgttttaacATCAAATC-TATTGTTCGATTGAACCTCGAT----AGTTTTACTCTATGTTCCTTTGCTTTATAACCCGACAGA
i caePb3.Scfld02_0      I 59 C 0
e caeJap4.Scaffold17934   506100   0 +   591668 C
e cb4.chrX              10438801  16 + 21540570 I

a score=1651.000000
s ce10.chrX              5112160  85 + 17718866 ----AGATAACAGACATT------------ATTTATAATTTGCTTAATGCACTCAATTTATCA----------TATAGAT-------TTAATTTCAGGGACCGGGCTCGATGCGTTCG
s cb4.chrX              10438817 104 + 21540570 AGATAAACCTCAACTATT------------AATTACAAATAGTCGAATTAACTGATTTCGTTccacaactt--tcaaaaaaaatctccgaTTTTCAGGGACCGGGATCGATGCATTCA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   1944961  64 -  4500979 --GTCAGCAGCAATTTTC------------CA---------------------------GTTCCaa-------tcaaaaa------cctttttccaGGGACCGGGTTCGATGCGTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70633  58 -   141584 ----Gaacaactcatttt-------------------------------------------------------tttgaattcttat-ttctttccaGGGCCCGGGTTCGATGCGTTCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3354862 114 +  4147112 ----AAACATAGCATTTTGGACAGTAGAAGTATTTTGCATTGAATAATTATCTTCTCCTATTTCATCATACACTGTaaacttttatctttttttcagggacCGGGTTCGATGCGTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   506100   0 +   591668 C

a score=41778.000000
s ce10.chrX              5112245 54 + 17718866 ACAACGACCAATACAAAGCGATCTACTGATTTCATTTTCCAAGAAACTTTCT-AA
s cb4.chrX              10438921 54 + 21540570 ACAACGACCAATACTAAACGTTCAATGgattttattttctctgaATCGGTTT-AA
i cb4.chrX              C 0 I 922
s caeRem4.Crem_Contig0   1945025 54 -  4500979 ACAACGACGAATACTAAACGATCAACggatttcattttccaggaaactttct-ga
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold567     70691 54 -   141584 ACAACAACGAATACTAAACGATCAATGGACttcattttccaagaaaGTGTTT-GA
i caeSp111.Scaffold567  C 0 I 1
s caePb3.Scfld02_0       3354976 55 +  4147112 ACAACGACGAATACTAAACGCTCGACTGACTTCATCTTCCAAGAAACcttctaaa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   506100 54 +   591668 ACAACAACCAATTCTAAACGCACCGATGATTTCTTGTTTCCTGAAACTTTCT-Aa
i caeJap4.Scaffold17934 C 0 C 0

a score=-14936.000000
s ce10.chrX              5112299 64 + 17718866 TTCTGACCGTCTTCTTCTTTCAA--AAAAAAAAAACGTTGT----AATGTGCAATTTT-----GATTTC-----TCTTTC
s caeRem4.Crem_Contig0   1945089 57 -  4500979 ttccttctcaaaCCGATTTACT--------------TTTGC----aatgttctattttttgacaacttt-----tcaatt
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     70746 62 -   141584 ACCTTTCTAAATTCTTTTTACC--------------CCTgt----aaaaactcattttttattggcttttctgaactttt
i caeSp111.Scaffold567  I 1 C 0
s caePb3.Scfld02_0       3355032 70 +  4147112 ttgtttttgttttttttttacc--------atgAATCCTGTTTCCTGAAACTCCTTTCTTGCAATCAATGTC--ACATGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   506154 60 +   591668 ttaaatcttgattttttttttcatgataaaGAAAAATGTAT----ATATTCTTATTTTTAGTTC----------------
i caeJap4.Scaffold17934 C 0 I 400
e cb4.chrX              10438975 922 + 21540570 I

a score=11318.000000
s ce10.chrX              5112363 75 + 17718866 TTTCATCATTATTACTAAA-----TG-----------TTTCCTGTATTTTTCAGATTTTTTATTGGAAAACTTTCACAATAGGTTGTTACA
s caeRem4.Crem_Contig0   1945146 87 -  4500979 aCTGCCTTTTGATATGAAG---TTTGCGACTAAccatatatttttcttttccagaagttttatTTGGAAACTTTGACGACAGG-TGTtaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70808 80 -   141584 gtTCTCACTT-TCACTAAA---CTTG------ttcattttcgtttcatttccagacagttttattggaaattttgacgACAGG-TGTtaca
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3355102 84 +  4147112 ATTTGAACTTCTCACTAAATGTTTTG------AccttttactgtttttttccagatggttTTATTGGAAACTTTGATGACAGG-TGTTACa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   506214 400 +   591668 I
e cb4.chrX              10438975 922 + 21540570 I

a score=33887.000000
s ce10.chrX              5112438 124 + 17718866 AAGAAGAAAACGAGTAGAAGTTCACGACA-----------ATAAAATGTGTGAAACGAAAAAA-GTTTAGAAGCATA--TTG----------------G----------GATGCAAATTCATCTTT---------GGACTTCTTTATTAATACAAATGTTTGTTGA------CTTTCTT
s cb4.chrX              10439897 169 + 21540570 aagaaaacaaCACATAGAAGTTCACGACATTTGAACGAGCGAGAAAAGAACAACACatagaagtttctggaaacaat--tttagaaaaaaagagg---gagagGAGTGAGATTC-AACAGTTCTATATTTTCCACGAACTTCTTTATTaatacaa----ttttccaaatgtttcTTTTC
i cb4.chrX              I 922 C 0
s caeRem4.Crem_Contig0   1945233 117 -  4500979 aagaagaagacgaaaagaagtTTACGACA----------CaaaaaaaGA-----------------TTAGAAGCAAT--GTAGGGAGACAGGAGA---G----------GATGC-ATTACTTCTTT---------GAACTTCTTTATTAatacaa----ttttcga------ttttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     70888 136 -   141584 aagaagaagac-gcaAGAAGTTTACGACA----------GAAATAACGAGTgacacaaaaaag-ttttagaagCAATGGTTgggggagagagaaaattg----------gaTGC-AGTTTATCTGT---------CAACTTCTTTATTAATACAA----TTTtaga------cttttt-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3355186 131 +  4147112 atgaagaagacaaaaagaagtTTACGACA----------GAAATAACGAgtgagacaaaaaagaatttagaaGCAAT--TTGGGAGAGAAAA------G----------GATGC-AAATTATCTGT---------CAACTTCTTTattaatacaa----tttttga------ctttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   506214 400 +   591668 I

a score=524684.000000
s ce10.chrX              5112562 1010 + 17718866  
s cb4.chrX              10440066 1174 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1945350 1049 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold567     71024 1026 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3355317 1020 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   506614 1122 +   591668  
i caeJap4.Scaffold17934 I 400 C 0

a score=-7697.000000
s ce10.chrX              5113572 19 + 17718866 -----GTTCCATAA-------------ATTACAGATA
s cb4.chrX              10441240 23 + 21540570 --------TCATTA--CAATTGG----CTCAAGGATC
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold567     72050 10 -   141584 ---------------------------atagaaaata
i caeSp111.Scaffold567  C 0 I 1
s caePb3.Scfld02_0       3356337  8 +  4147112 -----------------------------caaaaata
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   507736 37 +   591668 gaacataCACATAAATTAACGAGCACTATGTAGAATA
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1946399 31 -  4500979 I

a score=178360.000000
s ce10.chrX              5113591 239 + 17718866 AACTTT---------------------CAGAATTTTTTCAACGCCTAC--------------------CTCCTTTGGCTTGATGTCAACAACCTTGACCTTCTTCTTCA---TGTCAGGTGTCTTCTTAACTTGCTCATCATCTTCATCCTCGTAATATTCATCAGCTTCCTCCTCGGAGTCAGAT------------GCTTCGGTTGGGAGAACCTTAGCATTGTCGGTTTC------CTTGACTGGCTTGGCGGTGGTTGTTGGAGCCTTCACGTCAAGTTTGGCGCTGAAAAACGCTT
s cb4.chrX              10441271 238 + 21540570 TTCTAT---------------------CTCACCTCGGTTGG---------------------------CTTCTTTGGAGTGATGTCAACAACCTTGACCTTCTTCGACT---TGTC---AGTCTTCTTGACTTGCTCGTCATCCTCATCCTCGTAGTACTCATCAGCCTCCTCTTCAGAGTCAGATGATGAAGTA---GCCTCGGTTGGGAGAATCTTGGCGTTGTCGGTCTCAGCTGGCTT---TGGCTTGGC---GGTGGTTGGCGCCTTCACGTCAAGCTTGgcgctgaaaattagaa
i cb4.chrX              I 8 I 1
s caeRem4.Crem_Contig0   1946430 262 -  4500979 AACTGT---------------------CTCACCTCCTTTGGCTCCAATGGCTGCTTCGATTGCTTAATCTCCTTTGGTTTGATGTCAACAACCTtgaccttcttcttcttcatgtcTGGAGTCTTCTTAATTTGCTCATCATCCTCATCCTCATAGTACTCATCAGCCTCCTCCTCAGAGTCAGATGATGATGGA---GCCTCAGTTGGGAGAACCTTAGCATTGTCGGTTTC------CTT---TGGCTTGGCGGTGGTGGTTGGGGCCTTCACGTCGAGTTTggcactgaaaa------
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold567     72061 252 -   141584 atatgtgATAATTGAATAACAAG----CTtacctctttctc---------------------------ttcctttggCTTGATGTCAACAACCTtgaccttcttcttca---tgtCTGGAGTCTTCTTAACTTgctcatcatcttcatcctCGTAGTACTCATCAGCTTCTTCCTCAGAGTC---AGTTGTAGTT---GCTTCGGTTGGGAGAATCTTAGCGTTGTCAGCCTC------CTT---TGGTTTCTCGGTGGTAGTTGGTGCCTTCACATCGAGCTTAGcgctgaaagaaaaac
i caeSp111.Scaffold567  I 1 I 2
s caePb3.Scfld02_0       3356346 262 +  4147112 ttttgagttgTCTCACCAAAAAAGTGCCTCACCTCCTCAGA---------------------------TTCCTTTGGCTTGATATCAACAACCttgaccttcttcttca---tgtcTGGGGTCTTCTTGACTtgctcatcatcttcatcctcATAGTACTCATCAGCTTCCTCCTCAGAGTCAGAAGTTGAGGTTGAGGCTTCAGTTGGGAGAATCTTGGCGTTGTCGGCATC------CTT---TGGCTTGGCAGTGGTGGTTGGAGCCTTCACGTCAAGCTTGgcgctgaaaaataatt
i caePb3.Scfld02_0      I 1 I 37
s caeJap4.Scaffold17934   507773 235 +   591668 ATCCTTAAATATTGTGTAAAACAAATCCTCACATC---------------------------------CTTCTTTGGTTGGATTTCAACAACTTTGACCTTCTCCTTTA---AAGCAGAGGTCTTCTTGATCTGCTCATCATCCTCATCCTCATAATACTCATCAGCATCTTCCTCAGAATCAGAA------------GCTTCGGTTGGGAGAACCTTGGCGTCATCTGTGGC------TTT---TGGCTTTTCAGTGGTAGCTGGAGCTTTCACGTTAAGCTTGGCGCTGA---------
i caeJap4.Scaffold17934 C 0 C 0

a score=-7419.000000
s ce10.chrX              5113830 43 + 17718866 GTAATGAATGCT--------------------ATGGAA---AAGCGGAGTCTTTCTTACTTTTTGC
s cb4.chrX              10441510 38 + 21540570 ttagtGATTGTT--------------------ATGACT---ACCTAACA-----CAAACTTCTTGT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1946692 45 -  4500979 --aatgatttat--gcATGGGGAAA-------ACGAct---aa--aaaa-----ccaactttttgc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     72315 37 -   141584 ttagtGAA------------------------GTCACTCGCAACAGTAA-----CTAACTTCTTGT
i caeSp111.Scaffold567  I 2 C 0
s caeJap4.Scaffold17934   508008 53 +   591668 --AATGAATTATCAAGATCAGAATATTTTTTCATCAGA---ATAAGATC-----CTTACTCCT---
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3356608 37 +  4147112 I

a score=311233.000000
s ce10.chrX              5113873 439 + 17718866 TGAACTCATCATCGTGGATGATTGGAGTGAGT---------TCACTGTCCTCAACTGAGATATCTGGTGACACCTCGTCTCTGTAGTCCTTCCAGTAGGTGACTGCAATTGGACGGACATATTTCTCAAGATCTGGGAAGTCGCGAAGCATCGCAAGAGTTCCGTTGATGCGAAGATCGATGTAGCTAAATA---AATTT--------------TAGTTTAA--TCAGGAATGTTTGATTCTA-----TTACCGAAGCCGATGAATAACGGTTGGCTTGTATGCGGCAGCTTCCTTTGAATCGGCCTTCAGCAAGTGACGGTATCTGTTCAAAGTGTGCATGCGATCCTTCTCCTCTGCACGGATGTAAGCCTTAAGAGATTGGAGAACAGAGTGCTTGTTTGGCTTGTTGACGTGAGTAGCGAGAGCTTGACGATAATCGTGTGTAGCCTGA----AAAAACA----CATT--ATTTAGTT
s cb4.chrX              10441548 399 + 21540570 TGAAGTCTTCCTCCTTGAGAAGAGATTCGATG---------TCGGTCTCCTCAATGTCAGTGTCTGGGGTGACCTCATCTCTGTAGTCCTTCCAGTAAGCAACAGCAATTGGGCGGACGTGTGTCTCGAGGTCTGGGAAGTCACGGAGCATGGCCAAAGTTCCATTGATGCGGAGGTCAATGTAA-------------------------------------------------------------------CGAAGTCTGTGGAGAACAGTTGGTTTGTATCCCTCGGCCTCCTTTGGATCGGTCTTCTGCAAGTGACGGTATCTGTTCAAAGTGTGCATACGATCCTTCTCCTCAGCACGAATGTACGCCTTGAGGGATTGAAGAACAGAGTGCTTGTTTGGCTTGTTAACATGAGTAGCGAGAGCCTGACGGTAGTCATGAGTGGCCTGA----AACAATA---CAATTTGATGAGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1946737 453 -  4500979 TGAACTCTTCATCGTGGAAATCAGGAATGATGGCAGAGATTTCGGCCTCATCAATGTCGACTTCTGGTGAAATCTCCTCTCTGTAATCCTTCCAGTAGGCGACGGCAATTGGGCGAACGTGGCTCTCAAGATCTGGGAAATCGCGGAGCATTGCAAGAGTTCCGTTGATGCGGAGATCGAtgtaactgaaaa----attgtcttGTTAGATCTGGAATTCTG--TGAA----------ACTTC-----TTACCGGAGTCTGTGAAGAACAGTTGGCTTGTAGCTCTCGGCCTCCTTAGAATCAACCTTTTGCAAGTGACGATATCTGTTCAAAGTGTGCATACGATCCTTCTCCTCAGCACGAATGTAACCCTTGAGTGCTTGAAGAACGGAGTGCTTGTTTGGCTTGCTGACATGGGTGGCAAGCGCCTGACGGTAATCATGAGTAgcctga----aaaaatg----aattgaattgaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     72352 440 -   141584 TGAACTCCTCATCGTGAACGAGAGAGGTGATC---------TCAGACTCTTCAAAGCTGACATCTGGAGAGATCTCATCTCTGTAATCCTTCCAGTAGGCGACGGCAATTGGTCGAACGTGGCTTTCAAGATCTGGGAAGTCACGGAGCATGGCAAGGGTTCCGTTGATACGGAGATCGATGTAACTAAAAACAGAAGtg--------------aaattcta--gaaactGCATTTGTCTTTC-----TTACCGGAGTCTGTGAAGAACGGTAGCCTTGTAAGAAGCAGCCTCAGCGGAGTCGACCTTCTGCAAGTGGCGGTATCTGTTCAAAGTGTGCATACGATCCTTCTCTTCGGCACGAATGTAAGACTTGAGAGATTGAAGAACAGCGTGCTTGTTTGGCTTGTTTACATGAGTAGCGAGAGCTTGACGGTAGTCGTGAGTAGCCT-A----AATGATA---ACATTGAATAT----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3356645 445 +  4147112 TGAATTCTTCCTCGTGAAGGAGTGGAGTGAGC---------TCGCTTTCCTCAATATCAACATCTGGAGAGACCTCCTCTCTGTAGTCTTTCCAGTAGGTAACGGCAATTGGACGAACGTGGTTCTCAAGATCTGGGAAATCACGGAGCATAGCAAGAGTTCCGTTGATGCGGAGATCGATGTAGCTGAAAAGTTTATTG------------CAGAATTCTG--CAAAACATGTTTG-CTATC-----TTACCGGAGTCTGTGAATAACAGTTGGCTTGTATTGTGCAGCCTCCTCAGCGTCGACCTTTTGCAAGTGACGGTATCTGTTCAAAGTGTGCATGCGATCCTTCTCTTCGGCACGGATGTATGCCTTAAGAGATTGAAGTACGGCATGCTTGTTTGGCTTGTTGACGTGAGTAGCAAGAGCTTGACGGTAGTCATGAGTAGCCTGA----AATAACA---ACCAT-ACTATAGCT
i caePb3.Scfld02_0      I 37 I 19
s caeJap4.Scaffold17934   508061 452 +   591668 TGAAATCTTCCTCTCTGAATGGTGGAAGAACC---------TCGTTCTTTTCAATAGAAATATCCGGGGAAACCTCATCTCTGTAATCACGCCAGTACTTAACCGCAATTGGGCGCACATATTTCTCCAAATCTGGGAAGTTATGAAGCATGCCCAAAGTTCCCTTGATGCGGAGGTCAATGTAGCTGAAAT--GAATAG--------------GAATTATGATTAGAACAAGATAGTTGTTCAATGATTACCGCATTCTGTGAAGAACAGTTGGCTTGTAAGCAGCAGCCTCCTTCGGGTCCACCTTGAGCATGTGCCGGTATCGGTTCATGGTGTGCATGCGATCCTTCTCCTCACAACGAATGTACGACTTGAGGGTGTTGAGAACGGCGTGCTTGTTTGGCTTTTTGACGTGATTAGTCAAAGCTTCACGGTATTCATGAGTGGCCTAAACGTAAAGGTAGAGATGTTTAata-----
i caeJap4.Scaffold17934 C 0 C 0

a score=-1511.000000
s ce10.chrX              5114312 7 + 17718866 TATGTTG----
s caeRem4.Crem_Contig0   1947190 7 -  4500979 caaGTCG----
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold567     72792 7 -   141584 CATATAA----
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   508513 7 +   591668 ----tgggggg
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3357090 19 +  4147112 I
e cb4.chrX              10441947 0 + 21540570 C

a score=-2019.000000
s ce10.chrX              5114319 13 + 17718866 TCTTACTTCGCCT
s cb4.chrX              10441947  8 + 21540570 -----TCTCCCTG
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold567     72799 13 -   141584 Tcaagtttctttt
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   508520  8 +   591668 gggggttt-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3357090 19 +  4147112 I
e caeRem4.Crem_Contig0   1947197 10 -  4500979 I

a score=-1392.000000
s ce10.chrX              5114332 5 + 17718866 AAGTT-
s cb4.chrX              10441958 4 + 21540570 -AATT-
i cb4.chrX              I 3 I 3
s caeRem4.Crem_Contig0   1947207 4 -  4500979 -aatt-
i caeRem4.Crem_Contig0  I 10 I 1
s caeSp111.Scaffold567     72812 2 -   141584 ca----
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   508528 5 +   591668 -aatTA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3357090 19 +  4147112 I

a score=215200.000000
s ce10.chrX              5114337 260 + 17718866 CTTACATCTCTCTTCTTCTCGTTAAGCATTGCCTGAACACGCTCCTCATGAACCGCCTCGATCTCCTTTCGCATTCTCTTGTGCTCTTCTTCGAGCGAAGAAACGGT-----------------------------------------------CTTCTGGAAGCGGGCGTTCATTTGAGACTTGAACTTCTCGGCTCCCTTTGGATCCTTGGCCTTTTGCTCGTTGTATCTCGTCTCCAAATCTCCCCACTCCTTCATCACCTG-----AAT---ATT-CATA----GTTTGTGT------------------------CATGCAATAATTTTTAATTAAAAG
s cb4.chrX              10441965 278 + 21540570 TTTAcatctctcttcttctcgtttAGCACAGCTTGAACACGCTCCTCGTGCACTGCCTCAATCTCCTTGCGCATTCTCTTGTGCTCCTCCTCCAATGAAGAGACGGT-----------------------------------------------CTTCTGGAAACGTGCGTTCATCTGAGCCTTGAACTTCTCGGCTCCTTTTGGATCCTTGGTCTTTTGCTCGTTGTAACGGGTCTCCAAGTCTCCCCACTCCTTCATCACCTG-----AAC---AAT-TTAG----------GTGTTGATGTTTGTTGTTTCTTATTGAGTGTGGTTGACATTAATTTCTAG
i cb4.chrX              I 3 I 47
s caeRem4.Crem_Contig0   1947212 283 -  4500979 cttacatctcttttcttttcgttaAGCATAGCTTGAACGCGCTCCTCATGCACAGCTTCAATCTCCTTTCTCATTCTCTTATGCTCTTCTTCAAGGGAGGAAACGGT-----------------------------------------------CTTCTGGAAGCGAGCGTTCATCTGGGTCTTGAACTTCTCAGCTCCCTTTGGATCCTTAGCCTTCTGCTCGTTGTATCTTGTCTCCAAGTCTCCCCACTCCTTCATCACCTG-----AAC---AAT-TCAAGGA-TTTTGTGTATTGATGTTT----CTTCCTTTGCCGTGTGGTTGACATTAATTTCAAG
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold567     72814 286 -   141584 -ttacatctctcttcttctcattgagCATAGCTTGAACGCGTTCCTCATGAACAGCTTCAATCTcctttctcattctcttgtGCTCTTCCTCAAGGGCAGAGACAGT-----------------------------------------------CTTCTGGAAGCGAGAGTTCATTTGGGTCTTGAATTTCTCGGCGCCCTTTGGATCCTTGGCCTTTTGTTCATTGTATCTTGTCTCCAAATCTCCCCATTCCTTCATCACctg-----aacaaaaatatttaggA-TTTTGTGTTTTGC--CTTGTCAATCCTTATCACATTT--TTGACATTAACGTTAAG
i caeSp111.Scaffold567  C 0 I 40
s caePb3.Scfld02_0       3357109 287 +  4147112 CATacatctctcttcttctcattaaGCATAGCCTGAACGCGCTCTTCATGAACAGATTCAATCTCCTTGCGCATTCTCTTGTGCTCTTCCTCGAGTGAGGAAACGGT-----------------------------------------------TTTTTGGAAACGGGCATTCATTGAAGTCTTGAATTTCTCGGCTCCCTTTGGATCCTTAGCCTTTTGCTCGTTGTATCTGGTCTCCAAGTCTCCCCATTCCTTCATTACCTG-----AAC---AATTTCAAGGATTTTTGTGTGTTGATGTTTCTCCCTTCTTATCACATGC--TTGACACTGATTCCAAA
i caePb3.Scfld02_0      I 19 I 40
s caeJap4.Scaffold17934   508533 281 +   591668 TGTAcatctctctttttctcgttGAGCACAGCTTGGACGCGCTCCTCGTGAACTGCCTCGATCTCCTTTCTCAATCTCTTGTGCTCCTCTTCAAGCGAGGAAACAGTCTGAAAACAAAGCAAAGCGTTCGTTAAACGACAATTGCTATACAAACCTTCTGGAAGCGAGCATTCATTTGAGTCTTGAACTTCTCTGCTCCCTTCGGGTCCTTTGACTTCATCTCATTGAATCTGGTCTCCAACTCTCCCCACTCCTTCATAACCTGGAAATAAT---AATGTAAG------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=-3733.000000
s ce10.chrX              5114597 15 + 17718866 TCTTTTTTAACTTCA
s caeRem4.Crem_Contig0   1947497 15 -  4500979 ACACTTCTCATGGAA
i caeRem4.Crem_Contig0  I 2 I 28
s caeSp111.Scaffold567     73140  8 -   141584 -------TCACCGAG
i caeSp111.Scaffold567  I 40 I 17
s caePb3.Scfld02_0       3357436  8 +  4147112 -------TCATTGGa
i caePb3.Scfld02_0      I 40 I 9
s caeJap4.Scaffold17934   508814  1 +   591668 --------C------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10442243 47 + 21540570 I

a score=393425.000000
s ce10.chrX              5114612 735 + 17718866  
s cb4.chrX              10442290 748 + 21540570  
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   1947540 789 -  4500979  
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold567     73165 753 -   141584  
i caeSp111.Scaffold567  I 17 C 0
s caePb3.Scfld02_0       3357453 761 +  4147112  
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   508815 634 +   591668  
i caeJap4.Scaffold17934 C 0 I 747

a score=-99.000000
s ce10.chrX              5115347 2 + 17718866 CG
s cb4.chrX              10443038 2 + 21540570 AA
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig0   1948329 2 -  4500979 ca
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3358214 0 +  4147112 C
e caeJap4.Scaffold17934   509449 747 +   591668 I
e caeSp111.Scaffold567     73918 0 -   141584 C

a score=988.000000
s ce10.chrX              5115349 19 + 17718866 GGGGGAATGAGATTAAAAA
s caeRem4.Crem_Contig0   1948331 17 -  4500979 --caaaaaaacattaaact
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold567     73918 10 -   141584 ---------aaattaaaaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358214 10 +  4147112 ---------aaattgaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   509449 747 +   591668 I
e cb4.chrX              10443040 56 + 21540570 I

a score=27133.000000
s ce10.chrX              5115368  64 + 17718866 ---------------------------------------TCAGTTT---------------------------------CTAAATATCT---TTCTCAA-TTTCCCTTTTCACTAGATATTTAATTGACACGGAAACTCA
s cb4.chrX              10443096  88 + 21540570 ---------------------------------------tcacttttttttccttt--------tagaACAAAAC----CGAAACGcatcaattttcta-ttttcccttTCACTGAAGATTGATTCGAACCAGAAATTCA
i cb4.chrX              I 56 I 13
s caeRem4.Crem_Contig0   1948376  90 -  4500979 ---------------------------------------tcactttttccattttt--------agaacCGAAACAA--CTAAACGcatcaattttcta-ttttcccctTGACTGAAGATTGATTCGAACCGGAAATTCA
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold567     73928 120 -   141584 tt-------------------caattcctCCCCCATatctcgtttttcattttgtcatCTAGAGAGAACCGAAACAAGCCCAACCGcatcaattttcta-ttttccccTTCACTGAAGATTGATTCGAACCGGAAATCCT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358224 130 +  4147112 ttgacatCACATTAATCTCAATATTCCCTCTCATAGatctcgtttttcattttgtt--------aaaACCGAAACAG--CTAAACGcctcaattttccatttttcccctTCACTGAAGATTGATTCGAACCGGAAATTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   509449 747 +   591668 I

a score=3649.000000
s ce10.chrX              5115432 24 + 17718866 TAATTTATTTTCAGTGAGCTTTCT---
s caeRem4.Crem_Contig0   1948466 19 -  4500979 TTATTTATCGCGACTGAGC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74048 27 -   141584 TTATTTATCGCAACTGAGCTCGTTTCA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358354 27 +  4147112 TTATTTATCGCGTTTGAGCTAGCTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   509449 747 +   591668 I
e cb4.chrX              10443184 13 + 21540570 I

a score=3580.000000
s ce10.chrX              5115456  61 + 17718866 --TAAAAGAAACGC-----------------AAAAAAGCTGAC-------------------ATCCAGCTTCTT-G---TCATA---------------------------------GTATT---ATTTGATGTATT-AC
s cb4.chrX              10443197 106 + 21540570 --TAAAGAAAAGGC-------------GatgaaaaaaactaatctACTCTCCCG--------TGCCATAGGCGCTGCCCCCAGA-----------TGGATTAAATGGGATACGTGATGGGTCAGTGTTTGATGGATTAAC
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   1948485 114 -  4500979 --TAGGAAAGACGCAGGAGAgacttgagaagaaaaaaataattttctttcccct--------ttccattttctc-aagCCCGTT-----------TGGCTTAACTGATGGATGTCACGGATC---GTTTGATGGATT-AC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74075 131 -   141584 AGAAACGAGAGCGAATGAATGGAAAG-GAGGGAAAAAACTAATCTTCTCGCGGTGTCCC---CCCTCTTTTCTC-AAGCCCACTGAGGGGGAGGCTGGATTAACTGGAGGATTTGATGGATC---ACTTGATGGATT-AC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358381 126 +  4147112 TGGAACAAGAGTGAATAGgggaata------gaaaaaactaatCTTCTCCCCGTTTgccatttcccattttctc-aaGCCTGTT---GGCAAGGCAGGATTAGCCGGAGGATTTGATGGATC---ATTTGATGGATT-AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   509449 747 +   591668 I

a score=243530.000000
s ce10.chrX              5115517 321 + 17718866 AACTCACCAATGCAATGGTACGGTCTGACACTGTGAGTCCACTTGCATGGCGATCCTTCCTCGCGGCACCAGTCGGAGATGCTCACTTCGTGCGAGTATTCGACGATGTTGGTGATGTTCATGGATGGATAAGCCTGAA--ACG-----------AGATTTGATTCGTTAC------A-TT--------TCTTGTGTCCCCATTTCTT-------------A-GAAAT------GTGTACAACTACCAACTTGAGAAACTCATGTGT-GCAATCGAGTCGCGTGTTCAA--CTTCACCTC-----CCCATGGGACTAACC--GACGGGAGGTCCTTACTCAAATTTACGCCTTGTTGGGAGAGAAAAAGAAGCACGCGG
s cb4.chrX              10443303 356 + 21540570 AACTCACCAATGCAATGATATGGTCGAACGCTGTGAGTCCACTTGCATGGCGATCCCTCCTCGCGGCACCAATCGGAGATGCTCACTTCATGCGAGTACTCAACAATGTTGGTGATGTTCATGGTTGGATAAGcctgaa--aagag---------agaagagattTGTCACTTGTTCG-CTGCTGAC--TTTCGTCCCCTCAT--AGTATTTTACAAACTGC-GAAATATGTTGGTGTACGACGA-CGACTTCCGAAACTCGTGTGTGAGAATCGAGTCGCGTGTTCAAACTTTGCCTTTGTGTCCCCTTGGGACTACCC-AGACCGGAGGTCCTTACTCAAATTTACGCcttttctggaa----gaaaaagacCACGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1948599 341 -  4500979 AACTCACCAATGCAATGGTATGGTCGAACGCTGTGAGTCCACTTGCATGGTGTTCCCTCCTCACGGCACCAATCGGAGACGCTGACTTCATGCGAGTACTCGACAATGTTGGTGATGTTCATGGATGGATAAGCCTGAA--ACGA----------AGACGTGATTTGTCAC---TCCA-CTACTCCG--TCCCTTTTCTTTATTCCTCGTTTTACAAACTAA-GATAT------GTGTACAAC---CAACTTCCGAAACTCGTGTGC---AATCGAGTCGCGTGTTCAAACTTGGATCTT-----CCCATGGGACTACCC-CGACGGGAGGTCCTTACTCAAATTTGCGCCTTACTAGGAG-AACGAAGAAGCACGCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74206 341 -   141584 AACTCACCAATGCAATGATACGGTCGGACGCTATGAGTCCATTTGCATGGTGATCCCTCTTCACGACACCAATCGGAGATGCTCACTTCATGCGAGTACTCGACAATGTTGGTGATGTTCATGGATGGATAAgcctgaaagaaga----------agatgtgatTCGTCAA---TTCACTCCCCATA-----CTTctctttatttctc-ttttacaAACTACTAAGATAT----GTGTACGAC---CAACTTCCGAAACTGGTGTGG--AAATCGAGTCGCGTGTTCAA--GTCGAACTT-----CCCATGGGACTACCC--GACGGGAGGTCCTTACTCAAATTTGCGCCTTTTtgggag-gaaaaagaagcacGCGC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358507 340 +  4147112 AACTCACCAATGCAATGATACGGTCGGACGCTGTGGGTCCATTTGCATGGAGATCCCTCTTCACGGCACCAGTCGGAGATGCTCACTTCATGGGAGTACTCGACAATGTTGGTGATGTTCATGGATGGATAAGCCTGA---AAGA----------AGATGTGATTCGTCAC---CCCG-TCACAATAGTTCCCTTTTCTTTATGTCTC-TTTTACAAACTAA-GATATGT----GTGTACGAC---CAACTTCCGAAACTCGTGTGG--CAATCGAGTCGCGTGTTCAA--CTTTATCTT-----CCCATGGGACTACCC--AACGGGAGGTCCTTACTCAAATTTGCGCCTTTTTGGGA--AAGAAGGAAGCACGCGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   510196 331 +   591668 AACCCACCAATGCAGTGATACGGTGTGACGCTGTGAGTATATTTGCATGGAGATCCCTCCTCGCGACACCAGCCGCTGATGCTCACTTCATGCGAATACTCGACAATGTTGGTGATGTTCCGAGTTGGATAGGTctgaa--aagagagagagaatatATATGATTCTTCAC---TTCA-CTGCATTC--ATTCGTTTTGTCA-------------------A-GAAAT------GTGCAC-AC---ATATATGTAACACCATTTTGT--TGGCTTGGTTGCATGTTCAA--CTTCATCAT--CATCCCAAGAGACTGCCAAAAGCGGGAGGTCTTTACTCAAATTTACGCCTTTTTGGAAA----CAAGAAACACGCga
i caeJap4.Scaffold17934 I 747 I 62

a score=15575.000000
s ce10.chrX              5115838 59 + 17718866 GGA-----ATGTGT---------------------ATATCTTTGC--TCTATGTCTGTTTTGTT--------TCCGGAACAATCTATGAGAAG---CA
s cb4.chrX              10443659 86 + 21540570 GGAAGAATATTTGT--GGACCC----------TCAGTCGTTTTGCTATATATGTCTGTTTTGTTTCTTGCCATCCGGAACATTTCATTGGAAGATTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1948940 64 -  4500979 GGA-----ATGTAA--GGACCC-------------ATGCCTTCGC--TCTATGTCTGTTTTGTT--------TCCGGAACAATCTatgagaa----ca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74547 68 -   141584 GGA-----ATGTAT-GAgaccc-------ttttctctttttttgc--tccA----TGTTATTCT--------TCCGGAACAATCTATGAAACG---CA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3358847 80 +  4147112 GGA-----ATGTATCGGGGCTCCCGCCATCTTTGGCTTCTTCTGC--TATATGTCTGTTTTCTT--------TCCGGAACAATCTatgaaaag---ca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   510527 62 +   591668 I

a score=2924.000000
s ce10.chrX              5115897 182 + 17718866 G--CAAAAAATCCCTGAAGGATTGGAAGTTTTGTG--AAAGCCAGAGAACCA-TGG-TTGTTT-AAAGTTTAATTGT---------------------CTTCCTTGCAATGTTGGTCCTA-----TCCC----TATTTCAATTGTATT----TGTGACATT------------TGTGACTACAC------GGAGCAAGACTTAGAGC-ATGAAAACGCCAAATTAAATG---------TTTGCAAAAAAGG
s cb4.chrX              10443745 196 + 21540570 C--AAAAACATCCCTGTAGGATTAGCTGG-----A--GACGCCAAAGAACGATTtg-ttgtttaaaaatttgattgtGGGACTGCCTTTATGTTGCT-TTTCTTGATTCTTCTGTCTTTGTTTGGACCCCACCAATTTCAATTGAATT-------------------------agttgaaagaagaaaagagagaaaaa---agaaa---aaaaacttcgaattaaAAG--AA-----TTGGaag------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1949004 218 -  4500979 a--gaaaaaatccCTGTAGGATTAAAAAGT---CG--GACGCCAAAGAGCGATTGG-TTGTTT-AAAGTTTGATTGTTTG-----------GTTGCT-ACTGCTAGctctatttcttttgtttagttccta--aatttcaattcaatttatttgattCCCTACTATGCaagaaagtcaaaaaaggagaacaaaaaaaga---agaaa-atagaaacttTAAATTACAAACCAATCTTTTTCTGTA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74615 195 -   141584 AGTGAAAAAATCCCTGTAGGATTAAAATGT---CGGACACGCCAAAGAACTA-----TTGTTT-AAAGTTTGATTGT--------CTTGGTGCTCCGACCAACTGAATCTATTGCTTCAG-TTGGTCCC----AATTTCAATTGCATT----TG-TTTCTCATTGC-------TGTTACcaaaa------agacaaaga---aga----aagaaacttcaaattaGACA---------CTGGGGAAAAGAA
i caeSp111.Scaffold567  C 0 I 52
s caePb3.Scfld02_0       3358927 199 +  4147112 a--caaaaaatcccTGTAGGATTAGGAAGT---CG--TGCGCCAAAGAACAATTCGGTTGTTT-AAAGTTTGattgt--------cttcttcttgct-ccttCTGATTCTATTGTTTTAG-TTGGTCCC----AATTTCAATTGCATT----TGCTCTCTTCCTAC-------Tgttagaaaaa------agacaaaga---agaaa-gaagaaacttcaaattaGACA---------CTGGGGAAAAGAA
i caePb3.Scfld02_0      C 0 I 44
s caeJap4.Scaffold17934   510589 148 +   591668 --GCGGgaaatttttgactttttga--------cG-----GTCAAAGAGCCA-AAA-TCAGTT---------Attgc---------------------tcttctatttttttgtgacCAG---GGGCCG----GG---CCGgcaaact-------------------------tgaaaaaatag------aaagaaaaa---agaaaaagggcaactttaaattagcct---------ccaaaaaaga---
i caeJap4.Scaffold17934 I 62 I 47

a score=-6124.000000
s ce10.chrX              5116079 29 + 17718866 ------------------CGTAAACTTTTATTG---------AAAATTGCTTGATT
s cb4.chrX              10443941 34 + 21540570 ------------------cctatttttttgttgtttcaatTACACATTCAGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1949222 34 -  4500979 ------------------TCTTTCTTTTTGTGCTCTAATCTAAACGTTGTGT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3359170 24 +  4147112 ------------------TTTATCCCTTTGTT----------CAAATTGTGT----
i caePb3.Scfld02_0      I 44 C 0
s caeJap4.Scaffold17934   510784 51 +   591668 TGCAAACGTCTCCGTCTCCCtatattttcttttattaaAGTTCATCTTATC-----
i caeJap4.Scaffold17934 I 47 C 0
e caeSp111.Scaffold567     74810 52 -   141584 I

a score=315126.000000
s ce10.chrX              5116108 1145 + 17718866  
s cb4.chrX              10443975 1176 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1949256 1215 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     74862 1133 -   141584  
i caeSp111.Scaffold567  I 52 C 0
s caePb3.Scfld02_0       3359194 1201 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   510835  954 +   591668  
i caeJap4.Scaffold17934 C 0 I 22

a score=1603.000000
s ce10.chrX              5117253 19 + 17718866 G--------------------AAGAGATGGAGTATGACG
s cb4.chrX              10445151 36 + 21540570 GATGAAGATGGTGATGATGAAAAGGACT---TTATGACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1950471 16 -  4500979 G--------------------AAGGACT---GTATGACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     75995 14 -   141584 G--------------------AAAGAC-----TATGacg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3360395 14 +  4147112 G--------------------AAGGAC-----TATGACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   511789 22 +   591668 I

a score=28119.000000
s ce10.chrX              5117272 37 + 17718866 AAATGAAAACAGACATCG------------CTCTCACAAGGGCAAACAT
s cb4.chrX              10445187 42 + 21540570 GAATGAAAACAGACTATGGTAGGTTGA-----TACACAAGGGCAA--ac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1950487 44 -  4500979 AAATGAAAACAGACATCG---AGTCGATCTCTTACACAAGGGCAA--AC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     76009 46 -   141584 aaatgaaaacagaCATCA---AGTCAATCTCTTACACAAGGGCAAACAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3360409 44 +  4147112 AAATGAAAACAGACATCA---AGTCAATCTCTTACACAAGGGCAA--AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   511811 44 +   591668 AGATGAAAACAGACTTCA---AGTCA--CTCTGACAAAAGAACAAACAC
i caeJap4.Scaffold17934 I 22 I 32

a score=6927.000000
s ce10.chrX              5117309 32 + 17718866 A----CAAGTAGTTCTCTTCCACAAAACTTTT---GAAG
s cb4.chrX              10445229 29 + 21540570 aatttaaaactttttcctACCGCAAAGTC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1950531 32 -  4500979 A----CAAGTAGTTCACTTCCACAAACTTTTG---AATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     76055 35 -   141584 A----CTGGTAGTTCGCTTCCACAAAATTTTGTTCAAAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3360453 32 +  4147112 A----CTGGTAGTTCTCTTccacaaacttttg---aaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   511855 32 +   591668 I

a score=34284.000000
s ce10.chrX              5117341 670 + 17718866  
s cb4.chrX              10445258 753 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   1950563 769 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold567     76090 707 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3360485 754 +  4147112  
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17934   511887 407 +   591668  
i caeJap4.Scaffold17934 I 32 C 0

a score=-10080.000000
s ce10.chrX              5118011 32 + 17718866 ----------GCCTTCCGCAGTTGGTTTAACTTTGCCTCTGC
s cb4.chrX              10446021 20 + 21540570 ----------GACACTCGCTGc-----cagctttg-------
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   1951342 22 -  4500979 ----------GGCACCCGGAGC---CTCAGCTCAG-------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     76797 15 -   141584 -------------TCTCTGAGC-----CTCCTC---------
i caeSp111.Scaffold567  C 0 I 12
s caeJap4.Scaffold17934   512294 20 +   591668 ATCGATCCCGATTCCTCTGA----------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3361239 32 +  4147112 I

a score=42592.000000
s ce10.chrX              5118043 101 + 17718866 -----ACACACTC----TGGGTGGC-GTTGATA--AGGTGAGAACATTAAAGAGTGAGCTG----C---------------GGGCAGAATAAGGGAAGCTGGGCGGAGCTA--GAGC-AGAAATGGGGCGTTCTT
s cb4.chrX              10446041 117 + 21540570 ------aaaaaaa----aaggtggc-GTTGATA--AGGCGAGAACATC-AAGAGTGAAGTGAG--CTCTGTCGGTCGAAGAAGGCAAGAGGgagaagg--gggcggagcccATGAGCAGGAGGTGGAGCGTTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1951364 105 -  4500979 -------AAAAGC----CGGGTGGC-GTTGATA--AGGCGAGAACATC-AAGAGTGAACTGAG--CTCTG-----------GGGCAGTAGGGGTgtag--gggcggagcttgagcATGAAAAAAGGGGCGTTCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     76824 107 -   141584 -----aaaaacgc----cGGGTGAT-GTTGATA--AGGCGAGAACATC-AAGAGTGAACTGAGCCCCCTC-----------GAGCAGAAGAAgtgaag--gggcggagctt--gcgCCATGAGAGGGGCGTTCTC
i caeSp111.Scaffold567  I 12 I 41
s caePb3.Scfld02_0       3361271 105 +  4147112 -----AAAAAAGC----CGGGCGGC-TCTGATA--AGGCGAGAACATC-AAGAGTGAACTGAG--CTCTC-----------GGGCAAAAGAAgggaag--gggcggagctt--gagcCAAGGGAGGAGCGTTCTG
i caePb3.Scfld02_0      I 32 C 0
s caeJap4.Scaffold17934   512314 103 +   591668 GCATCGGAGAAGCTCCGTGGGTGGCGGCGGATAATAAGCGAG-------AAAAGTGAGCTCTG--GTGGA-----------GAGGGGAGGAAATAAAG--GGGCGGAGT----------AGAAAGAGGCGTTTCT
i caeJap4.Scaffold17934 C 0 C 0

a score=-3331.000000
s ce10.chrX              5118144 13 + 17718866 GACCAGTT--TGCCA-
s cb4.chrX              10446158 15 + 21540570 GTCGAGTTGCGAGAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1951469 13 -  4500979 CGTGAGTT--GGACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3361376 13 +  4147112 CCCGAGTT--GAGCG-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   512417 13 +   591668 -AGGGGCT--CTGTGC
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     76931 41 -   141584 I

a score=5102.000000
s ce10.chrX              5118157 35 + 17718866 AACTGCATGA--GGTT--------TATCAAAGGAT-AAAGGATAAA
s cb4.chrX              10446173 34 + 21540570 GACTGCGAGA--GCT---------TATCAGGagat-aagagaaaaa
i cb4.chrX              C 0 I 1387
s caeRem4.Crem_Contig0   1951482 27 -  4500979 AACTGCAAGG--GCT---------TATCAGGAGAT-AAG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     76972 44 -   141584 AATCATGTGG--GATTGAATAGAATATTAGAGtatcaatagaaaaa
i caeSp111.Scaffold567  I 41 C 0
s caePb3.Scfld02_0       3361390 34 +  4147112 AACTGCCAGG--GCT---------TATCAGGAGAT-AAGAGGAAAC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   512430 32 +   591668 ----GCCTGAATACT---------TATCAATAGCT-GGACAGAAAC
i caeJap4.Scaffold17934 C 0 C 0

a score=-4691.000000
s ce10.chrX              5118192 25 + 17718866 ------TAAGTAAA-----------------TAGAAATAATAATAACA
s caeRem4.Crem_Contig0   1951509 24 -  4500979 -------AAGAAAC-----------------TGAGAACAACGATGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     77016 17 -   141584 -------------------------------taagtaTAATGAGGaca
i caeSp111.Scaffold567  C 0 I 225
s caePb3.Scfld02_0       3361424 16 +  4147112 -------------------------------TGAGAACAACGATGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   512462 42 +   591668 TCTAGACATAGAACGCGATATTGGATTACTGTAAGAACATTA------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10446207 1387 + 21540570 I

a score=106.000000
s ce10.chrX              5118217 41 + 17718866 ----------TCCGATAGATCGTCTCTAA-----GAAGAGGAACGGGAAATTTGGA-
s caeRem4.Crem_Contig0   1951533 39 -  4500979 -----------AGAGGAGATTA-CTGTAA-----GAAGATAAGCACGGAGATTGGT-
i caeRem4.Crem_Contig0  C 0 I 19
s caePb3.Scfld02_0       3361440 40 +  4147112 ----------TATGgcggatta-ctgtaa-----gaaGATAAGCACGGGGATTGGA-
i caePb3.Scfld02_0      C 0 I 948
s caeJap4.Scaffold17934   512504 57 +   591668 GTCTACGGATTGTAACGGATTAGGGGTAAAcgtgaatgaaaaaaaaacagactgGTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10446207 1387 + 21540570 I
e caeSp111.Scaffold567     77033 225 -   141584 I

a score=-1847.000000
s ce10.chrX              5118258 17 + 17718866 AAGAGGACGCAGAA---------------------GCA
s caeRem4.Crem_Contig0   1951591 36 -  4500979 aaaaaaa--cagaatgatAATAAGGACGAGATATTGCA
i caeRem4.Crem_Contig0  I 19 C 0
s caeJap4.Scaffold17934   512561 17 +   591668 -------------------ATGAGGACGACACT--GCA
i caeJap4.Scaffold17934 C 0 I 181
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e cb4.chrX              10446207 1387 + 21540570 I
e caeSp111.Scaffold567     77033 225 -   141584 I

a score=-495.000000
s ce10.chrX              5118275 115 + 17718866 CCGTTTTTGGAAACCATAGATATTGC--TAATGCTCATGTGATGCACCTGACATCAAA-----------ATTGAAAACCCATTTTCAAAAAAAAAACAG--------GAAATATCAAAATCTATGGAAATCCGCTC
s caeRem4.Crem_Contig0   1951627 125 -  4500979 CCGCCTC------CCGTGGTTGTTTCAATAACACTGA-ATGGAGTACGTTCCTGAAAAGATCGTGTTGTATCGAACACccaat----gaagaaaaacagcCTATGAAGATGTTCTTGAAACCGTGAGAATACGTGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e caeJap4.Scaffold17934   512578 181 +   591668 I
e cb4.chrX              10446207 1387 + 21540570 I
e caeSp111.Scaffold567     77033 225 -   141584 I

a score=453.000000
s ce10.chrX              5118390 2 + 17718866 --CA
s caeRem4.Crem_Contig0   1951752 4 -  4500979 CACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     77258 2 -   141584 --CA
i caeSp111.Scaffold567  I 225 C 0
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e caeJap4.Scaffold17934   512578 181 +   591668 I
e cb4.chrX              10446207 1387 + 21540570 I

a score=-6716.000000
s ce10.chrX              5118392 44 + 17718866 CTGT--------------------CTGA--ATGTTTTTCAAACGG--ATGTTCAAAGA-------GCAAAAGTAG
s caeRem4.Crem_Contig0   1951756 50 -  4500979 CCGTGGCTCACCCACACACTGAAGCTG-----TTTGTTCAAA-------GCTC-------------GAGAAGTAG
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold567     77260 26 -   141584 CCgt--------------------caa-----gtttttcaga------------------------aaaaagtat
i caeSp111.Scaffold567  C 0 I 11
s caeJap4.Scaffold17934   512759 55 +   591668 TTGT--------------------CTGAGCACATGTTCTAAAAGGTCATGTGCCAATGTATCTATGTAAAAGCCG
i caeJap4.Scaffold17934 I 181 C 0
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e cb4.chrX              10446207 1387 + 21540570 I

a score=297.000000
s ce10.chrX              5118436 21 + 17718866 ACAGGAAGCAAT-ATGACCTTT
s caeSp111.Scaffold567     77297 18 -   141584 ACAGGAAGCTTTGATAAC----
i caeSp111.Scaffold567  I 11 C 0
s caeJap4.Scaffold17934   512814 18 +   591668 TCAGGAAATACTGATTGC----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e cb4.chrX              10446207 1387 + 21540570 I
e caeRem4.Crem_Contig0   1951806 30 -  4500979 I

a score=-29695.000000
s ce10.chrX              5118457 225 + 17718866 TTCCGCTTGACATTTAC-----------------------------ATTTTCGTGG------------TTTGAACTCTGTAA-------GATACTCGCT----------------------GAGCACTTTGTAACTTCATCTCACTACGT-----------------------GGGGTTTTTAA-----TAACTAAGTTAGTCGAAGATTTTC--AAACCAGTTTTGAAAACATTT---CAAAACCGCAACTTGAAG-----GTTGTAA----------AAT---TGCACACTTCCGAGCA--------TTAAATGCCAGATTTGTCTTTATGAGATTT---------------------TGGTGCTGATGTTTG
s caeRem4.Crem_Contig0   1951836 340 -  4500979 TTCCGTTTAGTACTCATTTCCGGCAACTGGAAAGGTCAGAGGtttttttCTCAAGGAAAAGGTTTCTTGTCGAGACCGGAAACATTGATAACTTCCGCTTCACATTCAGGTTCCcttgatgaaaaatatactatGGAGAgcaaaacatgagaaaaataagagagctGGAAACTAAGTTTTTCTAATTATTGAgtagttt--taaaatgtttttgaaaaaga-tttcgaaaactttt---caaatct-cAATATGATA-----TTAGGAG---------TAATTAATGGTTACTTCTAAGAAAACGAGACTTGAATTGGAGA----------TGAAGTTTATCGGCAATACAACTAATTGCTGTTGATGTTG----
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold567     77315 212 -   141584 TTCCGTTTGACATTCAATATTGG-----------------------TCGTTCAAGTACAGCGttacattttgaaagaagaaa---------------------------------------aaaaagtttctagCGAGCATATAGTTTGa-----------------------aaggttttcaa------------------aaaacatttct--aaaaca-ttcagaaaattttctggTAATGAC-TAGTATGATGACATTTTAATAG----------AAATAATG------TCtgcgaaaa------ttgaattcttgaT---------TGAAACTT---------------------TGGTTAGAGTG----
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   512832 140 +   591668 TTCCGGTTCACATTTGC-----------------------------AGTTACATGT---------------------------------------------------------------------------------------------------------------------GCAGCTTTC----------------------------TTC---------Ttccaaaaacattt---caa-----aagttTGCTG-----TTTGTTATTCAGCACTTAACTACTGGT----TATGACAAA-------TTAAAGGCTTGGGCA-------AAAAGTTT---------------------TGGTGCGGATGTTTG
i caeJap4.Scaffold17934 C 0 I 80
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e cb4.chrX              10446207 1387 + 21540570 I

a score=-1678.000000
s ce10.chrX              5118682 54 + 17718866 CGTTGAGCTCTAATTTGATAAACT-----TTAAGAT--GAAGAAAACGGATGACTTTTGTA---------------
s caeRem4.Crem_Contig0   1952176 73 -  4500979 ---tgagctttggtggaagaaTTCTACGGTAGCGATCAGAAGAAAACTCGAGATTCTTGTTTACGGTAAACCGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     77527 59 -   141584 ---TAA--TTAGGTGAAATTACCC----GTTGAGATTTCGAG-AAACTCAAGATTATTGTTTACGAATA-------
i caeSp111.Scaffold567  C 0 I 5
e caePb3.Scfld02_0       3361480 948 +  4147112 I
e caeJap4.Scaffold17934   512972 80 +   591668 I
e cb4.chrX              10446207 1387 + 21540570 I

a score=16139.000000
s ce10.chrX              5118736 46 + 17718866 --GGGATTGTTTTCTGCATGACTGATTGGAATGCTGAACCGGTTGATT
s caeRem4.Crem_Contig0   1952249 46 -  4500979 GGCAATATTTATTCTGCCTGACTGATTGGAATGCTAAACcggttga--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     77591 44 -   141584 --CGAATACTTTTCTGCATGACTGATCGGAATGCTAAACCGGTCGA--
i caeSp111.Scaffold567  I 5 C 0
s caePb3.Scfld02_0       3362428 44 +  4147112 --GGAAGTCTTTTCTGCATGACTGATCGGAATGCTAAACcggttga--
i caePb3.Scfld02_0      I 948 C 0
e caeJap4.Scaffold17934   512972 80 +   591668 I
e cb4.chrX              10446207 1387 + 21540570 I

a score=-40251.000000
s ce10.chrX              5118782 149 + 17718866 TTTTTCTGTGTCGGGGGGTTTTTTTGTA-----ATC-----A-TAGGACAAAACAATCAAACG------TTGGAATGTAGAAAG--------------GTCATCCT-----------------------TATAAT---------C----AAAATTTGATA-------TAAAAAATCA---------------------------------------------------------CTAATA--ATTT--------------TGGC----------------------------------------AACTTGTTTCCAGAAACTTTTACTTGCCTTCG
s caeRem4.Crem_Contig0   1952295 261 -  4500979 ------------------tttttttgca-----atcaCAGTA-CAGAACAAAGCAACTTACTGAAATAATTGGAACGTTAAAAA----TGAGGATGCCATCAAT-----TCTTATCTAATTTCAGCGGTGAAAATATTCTCTTATCAATTAAATTGAACATGTTTGTGAAAATATGGTTGGATAGTTCTAATGGAAAACATTGT-----------------------GAACCGCTGACTT--TTTTGGTCTCTGG-----TGACAAGAGGTCAATGTGGATAA------------AAAACAAGGAACTTGTGGACAATAATTTCCAGTAAGTTTTT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold567     77635 238 -   141584 --------------------TTTTTGTA-----ATC-----A-TAAGACAAAGCAATTtactgaaataattgaacGGTGAAAAA--ACTAAGAGGGCAACCGTTTT---CCAcattctatttc------aaaaatgt-------caagTTAAATTAAGTA-------GAAATGCCGA-----------AATTGACAAGTGGGGC---------------AGAGAAtgggaatgaaaaataagattggGTAGATAACT---TGACCAAATTGTG--TTTGATAATATCAGTTGTTCGCAACACGGAACTTGATCCAGAATA-----AGTAA------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3362472 250 +  4147112 ------------------tttttttgta-----atc-----a-taGGACAAAGCAATTTACTGAAATAATTGAACGGGGAAGAACTATTGAGAAGGCAGCCATTTTTTCCCACactagatttcg-----aaaaatgt-------c----ttaatcaatta-------aagaaaatga--------------tgacaagCGTCGTGTGACCGTGTCCTgaagaaacttgaatttttgagca--atttgacATTCCCTT---TGAC-----GTTA--TTAGATAA--------GTTCGTAACGCGGAACTTATATCAAACAATTtccagtgagttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513052 142 +   591668 ------------------TTTGTCTACGTCAACATC-----ACTAACACATAACAATCCA--------------------------------------ACCAATTT---TTCTGtgcaaatgc------aaaaat--------------tacatAGCATA-------GAACTTTTGG-----------------------------------------------------------------TTTCCACATATAAATGAATGGC---------------ATAT------------GTCCCTAGGAAACTGAATTCCATGAT----AATG-------
i caeJap4.Scaffold17934 I 80 C 0
e cb4.chrX              10446207 1387 + 21540570 I

a score=99254.000000
s ce10.chrX              5118931 201 + 17718866 TTTCTGATGCTTTCTGAGCTTTTTTATT-TTATGAAGATACATTCCATGCGTACATTTGCAGAAGGGGCCCCCGGAGACAACTTGCG----ACTTCAAACATCTATATTCTAAATTCAG-ACCA---------------------------ACATCC-AACATCATGAATATGTAT------------CATAACTAACAGCTCTC----ACGTACTCGATTAAAGA----------AGAAATAAAAAG------AAACTATAATAGG------------------
s cb4.chrX              10447594 182 + 21540570 TTTGTCATGTTTTCTGAGCTCGTT--AT-TTCTGAAGAGCCA-TCCATGCGTACTCTTTCAGAAGCAGCCCCCGGAGACATCTTGCAACCGACTTCAAACATCTATATTCTAAATTCAG-A------------------------------GCATCCAAACATCACAAA----AAT------------CATAACTAAC----------------------------TAAAAGCACGAGAAATGGATGA------GAACGATGTTTGG------------------
i cb4.chrX              I 1387 I 67
s caeRem4.Crem_Contig0   1952563 187 -  4500979 ------ATGTTTTCTGAGCTCGTT--AC-TTCCGATGAGCCA-TCCATGCGTACTCTTGCAGAAGCAGCCCCTGGAGACAACTTGTA----ACTTCAAACATCCATATTCTAAATTCAG-AAAT---------------------------GCATCC-AACATCAAACC----AAT------------CATAACTAACAACTATC---------------CTAGGATAAAAGCACGTGAGGAGGATCA------GAACGATGTTTGA------------------
i caeRem4.Crem_Contig0  I 7 I 37
s caeSp111.Scaffold567     77873 204 -   141584 CTTGCtatgttttttgagcttGTT--AC-TTCCGAGGAGCCA-TCCATGCGTACTCTTGCAGAATCAGCCCCTGGAGACAACTTGTA----ACTTCAAACATCTATATTctaaattcagaagaa---------------------------acatcC-AACATCATAGC----AAT------------CATAACTAACAGCTTTC----ATGTAGAAGAGCAAAGA-AGAAGCACGagaaaaagatca------gaatGATGTTTGA------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3362722 204 +  4147112 cttgcTATGTTTTCTGAGCTCGTT--AC-TTCGGAAGATCCA-TCCATGCGTACTCTTGCAGAATCAGCCCCTGGAGACAACTTGCG----ACTTCAAACATCTATATTCTAAATTCAG-AGCG---------------------------ACATCC-AACATCATTGA----GAT------------CATAACTAACAGCTCGC----ACGTATCAGACCAAAGATAGAAGCACGAGAAGAAGATCA------GAACGATGTTTGG------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513194 255 +   591668 -TTTCAACGTTCTTTGAACCCGCC--CCATCCTTTATACTCA-TACATGCGTACTCTTGAA------GCCCCTGGAGACAAATTTTG----ACTTCAAACATCTATATTATAAGTTCAA-CGCGGTTCGGCTCGGCTCGGTTTGGTTTTACACAACC-AATATCGTcac----agtttctttttttgccccAATTAGCATGCACCGGTAGAGCTCACTttcagaga----------agaaaaaaactaatcGTTGACCGATTTTCAGGTCATgcacacgaaaaaa
i caeJap4.Scaffold17934 C 0 C 0

a score=-4121.000000
s ce10.chrX              5119132 18 + 17718866 AAAATTTTCGTTTTTGGA---
s caeRem4.Crem_Contig0   1952787 15 -  4500979 ---GAATTTGTCGtgttg---
i caeRem4.Crem_Contig0  I 37 I 1
s caeSp111.Scaffold567     78077 11 -   141584 A-------TGTCTTCGGG---
i caeSp111.Scaffold567  C 0 I 57
s caePb3.Scfld02_0       3362926 18 +  4147112 AAGGAGTTTGCCTACGGT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513449 18 +   591668 ---aaagttatctgTGCTGAA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10447776 67 + 21540570 I

a score=-9256.000000
s ce10.chrX              5119150 43 + 17718866 ---AAT----------------------ACATATTTTGGATATAA-----------------AAGGAAGTAATGA------TAAATTACTG--------------
s caeRem4.Crem_Contig0   1952803 40 -  4500979 ----------------------------attatttttggaattaa-----------------aTACAAAAACGAA------TGTTTTTCTG--------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3362944 86 +  4147112 ---AATCCGTTCCGAgctcaatttctcaatttcttttg--attaaaaaatgattttgagaagatACAAAAACTGATCGCTTTAGTTCTCTG--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513467 60 +   591668 AGTAAA----------------------ATGCCAGTTGGATAAGA-----------------GCATATGACATTA------TTATTCATTATGTGCATGCatatt
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10447776 67 + 21540570 I
e caeSp111.Scaffold567     78088 57 -   141584 I

a score=219.000000
s ce10.chrX              5119193 31 + 17718866 ACCGACTTTTT----ATGACCATCAATCACAAGTC
s caeRem4.Crem_Contig0   1952843 29 -  4500979 ACCGACATTTT---TGTGATCATTAATC---AACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     78145 32 -   141584 aaCAATTTGTACCATCCAATCgtcattc---tgtt
i caeSp111.Scaffold567  I 57 C 0
s caePb3.Scfld02_0       3363030 28 +  4147112 ACCGACTTCTA----CCGGTCGTTAATC---AGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513527 29 +   591668 tccaatatttt---ttgcatcgaaaaaa---aatc
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10447776 67 + 21540570 I

a score=119006.000000
s ce10.chrX              5119224 348 + 17718866 -GGTTTC---ACTGGGA--------TCTATGAAATTTTCAATCAGAAG-AACAATGCACC---ACGCGA-CAACA-ACG-------ACAAA------GAAATCAATC-----AAAAAAAACCATGATCGGACGGT-------A-----GTTGATGAGAACTGCATGAAGTGTGAGAAAAGCAGAG---AGGTATGGGAGAC-AAAAA-G---GTGGTGGT------------GACGCCCC--------------CTACCGCCT-AAAATACAGTACTAAATTTGAAGAGATTCACCAGAGAAGCAGAGATTAT-----TAGAG------AAAGAGGTGCA--------TGGATGGATCGGTCTCT--CTGCGGTCGGAGAGTGGTGG---CGGCGG--C-------AAGGGTCCTAACCGGTTCTGCGGTTGGTTGGACAACACTATGGTGATGCCCTC---CTCTT
s cb4.chrX              10447843 405 + 21540570 ---------------GA--------TT----ACCATGACAACCAGGAA-ATTAGTGCAAGGAAAGTAAAAACACA-ACAACACGACACAATAGAAATGAAATCAATCACTTTAAAAAACACTACGATCGGGGACT-------GTGGTTGATGATGAGACCT--ATGAAGTGTGAGAAATgatgag---aga---gaaagaa-aaaagtgtgtgtGGTGGAATTAGAGAGACCGATGCCTCCCCCCTCTTTTCCATCATCGCTA--ATATACAGTACATAATCaagagagg-tggaagaagaaatatagaatgaaatgagagagagagtgaaagagGTGCATTGGATTGGGGATGGGTCGTTTCTCAACTGTGGTCGGTGC---GGAG----AGGGCCGC-------CAAGGCCCCAACCGGTTCTGCGGTTGGTTGGACAACACTATGGTGATGCCCTCCAACTCTC
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   1952872 341 -  4500979 -TATTTT---ACGAGGA--------TCTGTAGTTATGACAGTTAGAAAGAACAATGTACG---AGACAAGAAACA-ACG-------ACAAAAGAAacgaaatcaatcaa--aaaaaaaaactatgatcGGACGCT-------A-----GTTGATGAGAACTGAATGAAGTGTGAGAAATGAAGAGGaaagg---gagagaa-aaaag-gtgtATGGTGGA------------GACGCCCC--------------TAACTGTAT--GAATACAGTACATAATACAGAGAGA----------------AGCAGGGAAAGAGAGATGGA---AGAGAGGTGCA-----------ATGGGTCTTT------CTGCGGTCGGAGAGTGGTGG----AGGGC--C-------CGATGGGCCAACCGGTTCTGC----GGTTGGACAACACTATGGTGATGCCCTC---TCCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     78177 358 -   141584 ----tttg-agaaaggt--------TCTACGAATACGGCAGTTACTGAGAACAATGTACG---AGACAAGCAACA-ACG-------acaaaagaaacgaaatcaatc------aaaaaaactatgatCGGACGGT-------A-----GTTGATGAGAATTGTATGAAGtgtgagaaat-gagag---aggctttggagaa-aaaag-gtgtGTGGTGGA------------GACGCCCC--------------TACCCTTCG--AAATACAGTACATTAtgtagagaga--aaaatgagaaagagagaataaagagagagag------agagaggtgCA--------TGGATGGGTCTTTT-----CTGCGGTCGGAGAGTGGTGGTGGCGGGGA--C-------CGAAGACCCAACCGGTTCTGTGGTTGGTTGGACAACACTATGGTGATGCCCTC---CTCTC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3363058 346 +  4147112 --ACTTTT-GATGTGGA--------TCTA-GAGTATGAT---------GAACAAAGCACG---AGACAAGAAACACACG-------ACAAAAGAAacgaaatcaatcaa---aaaaaaaactatgatcGGACGGT-------A-----GTTGATGAGAACTGTATGAAGTGTGAGAAATAAAGAG---AGgcatagaaaaagaaaag-gtgtGTGGTGGA------------GACGCCCC--------------TAACCGCTGGAAAATACAGTACATCATctggagag---aaaatgagaagtaaAGAATAA----------------AGAGAGGTGCA--------TGGATGGGTCTTTT-----CTGCGGTCGGAGAGTGGTGGTGGCGGGGA--C-------CGAAGACCCAACCGGTTCTGCGGTTGGTTGGACAACACTATGGTGATGCCCTC---CTCT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   513556 323 +   591668 acattttgtTGTGAAGAATATactttcttttcatttttcctttaaaaa-aacatagaaaa---ataaaagagaaa-gag----------aaagatgTGAAATCAATCAC----AGAAACGCTATAATCGGATGGGTGAAGAAA-----GTTGATGAAGACTGT----AGTGTGAGAAAT-TAGAG---AGGCGTGAGGGAT-GAAAA-G--TGGGGTGTC------------GACGCCCA--------------TAGGCAAAA------------------------------------------------------------------TGAAAGGTgca--------tggatggatggatggggGTCTGCGGTCGGAGAGTAGCGG---CGGTGA--CGGGCCGAGGAGGACCCAACCGGTTCTGCGGTTGGCTGAACAACACTATGCTGATGTCTtc---ttcct
i caeJap4.Scaffold17934 C 0 I 1774

a score=13255.000000
s ce10.chrX              5119572 128 + 17718866 TCACACA-------------AACTTC--------TATGAGTGTCTTC---TC---AAATGTATACGTACGGAAGCTTTTACCTCCTGTTGTGAGGG----------------CTTC-----------AAATT-ATGAATGTTTTAAC---------------TATTCGGTCTAGGTTGATACTGAAGATCAAAAATTG----------------------
s cb4.chrX              10448248 156 + 21540570 TCTCACCCTCTAGCATACCGAACTTTTCCCTCGCTATGTGTATTT-T---TGCCTCAATGCGTATACCCGGGAGTTTTTACCTCCCGCTGTTTGGGttttcatctttcttttttttgctatcG----AATTT-AT-----TTTGAAC---------------TATTCCCCT--------------------AAAACTGTAACAGT---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953213 138 -  4500979 TCTCA---------------AACTTT----------TGTGTGTTTAT---TCCCTCACACTATGTATACGGGAGTTTTTACCTCCCGCTGTTTAGG----------------TTTtacaaacgaaaaaaact-at-----ttttgat------------tcgtacttttct--------------------aaaattgttaCAGTTTGAGGAAAGGGCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     78535 128 -   141584 ACACAC--------------AACTTC--------GATGTGTATTTTT---CCCTTCACTATGTGTATACGGGAGTTTTTACCTCCCGCTGTTTGGG----------------TTTCattt-------aaact-at-----ttttaatcgTATTCCTCactctcgttttttttacC----------------GAAACTG----------------------
i caeSp111.Scaffold567  C 0 I 20
s caePb3.Scfld02_0       3363404 133 +  4147112 -CACAA--------------AACTTC--------TATGTGTATTTTTCTCCCCATCACTATGTGTATACGGGAGTTTTTACCTCCCGCTGTTTGGG----------------TTTCATCC-------AAACCAAT-----TTTTAATCGTAAACCTCAATTTCACTtcttttgact--------------gaaaactg----------------------
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold17934   513879 1774 +   591668 I

a score=-3771.000000
s ce10.chrX              5119700 24 + 17718866 TATTGTGAAGTAGATTAGAAGAT-T
s cb4.chrX              10448404  2 + 21540570 ---------------------CG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953351 23 -  4500979 TCCTgtaggaagaagaaaaagcg--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     78683 24 -   141584 TTCTATACGAAAAATTGGGAGAGG-
i caeSp111.Scaffold567  I 20 C 0
e caePb3.Scfld02_0       3363537 29 +  4147112 I
e caeJap4.Scaffold17934   513879 1774 +   591668 I

a score=-24786.000000
s ce10.chrX              5119724  70 + 17718866 -----------------AAATGTGAACTACGGTCTGTGAGGAAATGATAAAAAGATCTTTCCTATGATATTTCCTAATAGTGGAAAA-------------------------------------------------------
s cb4.chrX              10448406  24 + 21540570 A-----------------------------------GAGGCGAATGgcaatatg--------------------------------------------ttttt---------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953374 114 -  4500979 aaaaactagaagtgactaaataggaat---------gaggaaaatgaaaatgtg-------------------gaagcaaaagaagaaatgagtcACTTTCTTCACAGAAGGTGAGATGAAATTCGTTTGAATAGGGGAAAA
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold567     78707  40 -   141584 ---------------------------------------AGGAATT--GTGGTGGC-----------TGGATTgatataaataaaaagagga--------------------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3363566  54 +  4147112 -----------------AAATATGAA----------GCGAGGAATGAAGTCATGAC-----------TAAActaaaatagaaaagaagaggg--------------------------------------------------
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17934   513879 1774 +   591668 I

a score=-1409.000000
s ce10.chrX              5119794 33 + 17718866 TTTTGTTATTTTGAGTCAA-AAAACAGTGGAAAC
s cb4.chrX              10448430 32 + 21540570 ttttgtttggttgACTGTACAAATTGAGGAAA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     78747 16 -   141584 ------------------ACAAAAAGGCAGAAGC
i caeSp111.Scaffold567  C 0 I 199
s caePb3.Scfld02_0       3363620 14 +  4147112 --------------------aaaaaagtaGAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   513879 1774 +   591668 I
e caeRem4.Crem_Contig0   1953488 35 -  4500979 I

a score=-1083.000000
s ce10.chrX              5119827 14 + 17718866 TCTGTAGTCCAATT
s cb4.chrX              10448462  7 + 21540570 ---ATGgacc----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3363634  4 +  4147112 ---GTAG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   513879 1774 +   591668 I
e caeSp111.Scaffold567     78763 199 -   141584 I
e caeRem4.Crem_Contig0   1953488 35 -  4500979 I

a score=-36295.000000
s ce10.chrX              5119841 267 + 17718866 Ttttttaaattgtcgat-----gaaaacaatttttttcatccagttctatgctttagttatgtctaaagtgttgatat---tacaat---attgtagaggatagaac--atgcaa---aatcagtttacgtttctcaaaa----------agcaaactcgattttcaCCAATATTTGACTCGAAATAAAAAATGTT--------TTTGACATTCGGTTAATTTAGCATGATAGAAAAAGGTTTTTAATTATTTCCTCACA------TGTCGTACTTCACCGTTAGAACAAAAATAATG-TACTATTTC
s cb4.chrX              10448469 222 + 21540570 ----------------------gaaaaaaat--------------------------------ccgaaaaaatggCAT---GACTAA--AATTGGAAGGGGAGGGAG--ATGGGAGAGAAATGAGTCACCGCCTCtacgg----------gaaaaaaaaactttcca--ttTGAATAGCGTCAAATG--AATTGCCACtttttttGTGACACTCATATAACCTTCT--------CggaggttttcaaaatttgcatagTGTCCGTTTGACAGCCTTGACTTgct---caaaaattacagttctGTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953523 196 -  4500979 TTTTCTAATCTTTCAATGTGCAAAAAGAGATATTTT--------------------------CCAGGAAAACTCACAT---TACTCA-----TTCCAAAGATGACAA--ATCAAACTTACAGAAGTCACATCAT----------------GAAACATCtgctttcca--aaaaaaaaactcaaaaaggcGATTGCT-------------CAAACCCATGAC-----------------------CGAAACTTTTGTAGCG------CAACGGGGCCGATTATC----------------TTCTGCTCG
i caeRem4.Crem_Contig0  I 35 C 0
s caePb3.Scfld02_0       3363638 215 +  4147112 -----------------------GAAGAAAT--------------------------------------GAGTCACCTCCGTACTCCGGAATTCGTTTGGATAGCAGTATTGCCATTCTCACActtaacctttttttcaattttttttctgaa----ttggtTTTAG--TTTGGTTTGCATAAGGTG-----TGCTGGGAATAGTTTATTAACAACCTGCCTGact--------cacaaattttttgagctttccaGATG------AAAAAGCAATG-----CT--ACAAAGACTACGTCGCTATTTC
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold17934   513879 1774 +   591668 I
e caeSp111.Scaffold567     78763 199 -   141584 I

a score=-1167.000000
s ce10.chrX              5120108 21 + 17718866 AATACCAGGTGGAGAAAATTG
s cb4.chrX              10448691 20 + 21540570 AGTAATATACAGAAATATTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953719 15 -  4500979 AGTtg-----ataaaaattc-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3363853 115 +  4147112 I
e caeJap4.Scaffold17934   513879 1774 +   591668 I
e caeSp111.Scaffold567     78763 199 -   141584 I

a score=-15497.000000
s ce10.chrX              5120129 114 + 17718866 ----------GTACT--TTCTTTCAACTTGACATGAAATGTTAGCAACTATTATAGAATAATGTGATATAATTTCAAAAATTTAGTTTTTTGTTAGATGAAACCTAGAGTACAACAACTAGA-ATGT
s cb4.chrX              10448711  94 + 21540570 TGAAGCAGGAGAGCA--------AAAA-------GATATGACA--AATTG----CAGATTTTGT----TAATGACTTCCACTCCAATAGATATCAAGTGCAAA-------ACTGCCATGAGA-ATGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1953734  66 -  4500979 agaa--aatagaaCT--------AGAATTGTAACGTCATGGTA--ACATG----AAAATGTTG---------------------------CATCCAGTGTCA-------------CATGAAA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     78962 107 -   141584 ---------ACATCTGCTTTCCCAAAAATAGCTTGATATctcaagaatca----aaaatactGTAGCCTACTTTTTTACGCTTTGAACAATATTCTgtgaaaa-------tccaaaacaaaaaacgt
i caeSp111.Scaffold567  I 199 C 0
e caePb3.Scfld02_0       3363853 115 +  4147112 I
e caeJap4.Scaffold17934   513879 1774 +   591668 I

a score=40236.000000
s ce10.chrX              5120243 511 + 17718866  
s cb4.chrX              10448805 654 + 21540570  
i cb4.chrX              C 0 I 116
s caeRem4.Crem_Contig0   1953800 551 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     79069 564 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3363968 567 +  4147112  
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold17934   513879 1774 +   591668 I

a score=-3120.000000
s ce10.chrX              5120754 16 + 17718866 ACCACCTCATAA-ATGT
s caeRem4.Crem_Contig0   1954351 15 -  4500979 AC--TATGGTTATAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     79633 11 -   141584 -----CTGGAAA-AGAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3364535 11 +  4147112 -----Ctggatg-attt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   513879 1774 +   591668 I
e cb4.chrX              10449459 116 + 21540570 I

a score=990.000000
s ce10.chrX              5120770 13 + 17718866 GTATAACTCTAC---A
s caeRem4.Crem_Contig0   1954366 13 -  4500979 GAATAATTCAAC---A
i caeRem4.Crem_Contig0  C 0 I 86
s caeSp111.Scaffold567     79644 13 -   141584 GAATAATTCATC---A
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3364546 16 +  4147112 caaaatttaaactCTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   515653 13 +   591668 GTGTACTTTTGC---A
i caeJap4.Scaffold17934 I 1774 C 0
e cb4.chrX              10449459 116 + 21540570 I

a score=-2961.000000
s ce10.chrX              5120783 24 + 17718866 TTTTCAGAAA-----CATTTTGGGAACGA
s caeSp111.Scaffold567     79657 23 -   141584 TGTTTT-AGA-----CATTTTGGTAGTTC
i caeSp111.Scaffold567  C 0 I 57
s caePb3.Scfld02_0       3364562 17 +  4147112 TCTTCC-AGG-----CCTGATGG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   515666 26 +   591668 TATTTC-AAAGTTCTTCTTTTGCAAAA--
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10449459 116 + 21540570 I
e caeRem4.Crem_Contig0   1954379 86 -  4500979 I

a score=-2682.000000
s ce10.chrX              5120807 48 + 17718866 AAAAAAGAACAA----------GAAATGT---GTTCGTTCTTCTGAGAAAA----ATGAGGACAT
s caePb3.Scfld02_0       3364579 24 +  4147112 ------------------------ATCTT---GTGTattgtttcgaaacaa--------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   515692 65 +   591668 GAATAAGAGCAAGCAGCCGATCGGAATGTATCGTTTGGTTTCCTAACGAAACATTACGAAATCAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10449459 116 + 21540570 I
e caeSp111.Scaffold567     79680 57 -   141584 I
e caeRem4.Crem_Contig0   1954379 86 -  4500979 I

a score=-2398.000000
s ce10.chrX              5120855 21 + 17718866 ATGGTATTTTGCAATTCAAAC
s cb4.chrX              10449575 16 + 21540570 ATGG--CTTTCC---TCAGTA
i cb4.chrX              I 116 I 3
s caePb3.Scfld02_0       3364603 14 +  4147112 -------ttttcggATCAGCC
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17934   515757 16 +   591668 ACGATATTCTT----TCAAC-
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     79680 57 -   141584 I
e caeRem4.Crem_Contig0   1954379 86 -  4500979 I

a score=1617.000000
s ce10.chrX              5120876 3 + 17718866 GTA
s cb4.chrX              10449594 3 + 21540570 GGA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1954465 3 -  4500979 GGA
i caeRem4.Crem_Contig0  I 86 C 0
s caePb3.Scfld02_0       3364626 3 +  4147112 GGA
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17934   515773 3 +   591668 GTA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     79680 57 -   141584 I

a score=16749.000000
s ce10.chrX              5120879  71 + 17718866 ACGTTACGAAAT------------TGTTCTGTT-----GCACA--------GT----GAATACGTATTACAGTGACTCAAC-CTTCCT-TC-----------------CCTCACATACA
s cb4.chrX              10449597  88 + 21540570 ACGTTACGAAAT-----------------CATT-----GCACA--------GTATGCGAAGAAGGTGTACGATGACTCAACGCTTCCT-TCCTTTCCAATACCTCTTCTCTCCTTTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1954468 113 -  4500979 ACGTTACGAAATAGTTTTTGTATTCCTCCAATT-----GCACAGCATTGTTGTACATGAATAAGTATTACGGTGACTCAACGTTTCCT-TCCTACCTTGTTTCCCTTTCCTCACAGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     79737 107 -   141584 ACGTTACGAAAT---AATTCTGTTCCCTCAGTTCTTTAGCACAGTATT---GTACATGAATAAGT-TTACGGTGACTCAACATGTCCTATTCTACCTTTCTTG-----CCTCACAGACA
i caeSp111.Scaffold567  I 57 C 0
s caePb3.Scfld02_0       3364629 106 +  4147112 ACGTTACGAAAC---ACTTTTGTATTCACTATT-----GCACCGCATT---GTACATGAATAAGT-TTACGGTGACTCAACATTTCCT-TTCTACCTTTCTTTCCTTCCCTCACTGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   515776  51 +   591668 -------------------------------------------------ACGACCATGAATACATATTACGGTGACTCAACAGTTAGC-C------------------TCGCACAAACA
i caeJap4.Scaffold17934 C 0 I 793

a score=-32360.000000
s ce10.chrX              5120950 235 + 17718866 AAC-AG---TGCGCTCCAC-TTT--CGGCAAAAGGAGCGAACT--------GGTATGT----------------GAACGATTACG---TAAGCAAACGGAAATTCGAA-----AAGTGAAACACTTG---AATTATTGCGAGGTTTCTTAATTGGGAT---------------TTGGATCAACTTAT---ACGTAACGGT-------------------------------------TGTGAAGTC-AGTGTGGCATGTGATTTTCCGTG---CGAAACAATTAATATTGAAG-----------ATTC----AGTTA--------------------------------------CAAAATGATAAACAC-TGGAATTGAAAGATGAGAA----
s cb4.chrX              10449685 212 + 21540570 AAC-ATTTGCGCGGCCCGCTTTTTTCAGTTGCAT--------TTCT------GTATGT------------------TTAC---CG---TACACCTG-----------------AAGTGAAACACTTGAAAAACGGACGTGAGGCTTCAT-------TTAATTAGtgtttcaatattttcg-gCTCCGTGAAAGCTG------------------------------------------ATGAACAG-GAAGAAGCCATAATTGTGACGTG---GAGAACAAAAATTAAGGAAGATCAAAATC--ACGT----AGGTA--------------------------------------AGAAA-----------------CAAGAA-----------
i cb4.chrX              C 0 I 128
s caeRem4.Crem_Contig0   1954581 305 -  4500979 AAC-ATCT-TGCGGTGCGC-TTTTTCAGTTGCAT-----ACGTTCTAATACGGTATGTGGGA------------GATTGCATACG---TAAGCAGG--GAAGTtag-aaaaacaagtgaaacACTTG---AATTTATGTGAGGATTCGTAATTCAGATAATTGGAATTTCAAGGCGATTGAACTTCG---AAGTTGCAta---------------------gttcaaaaaagaaataaacgGATTG-AAGGAAGCCAT-TTTGTGAcgtgaaaaagaataaaaattacatCTATTAAGGAAC--ACGT----AGGCACTATGTAAATGCTAA--------AGATATTTGAGCGCCAGAAATGATAC---------ATCGAGAA-----------
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold567     79844 313 -   141584 AAC-ATTC-TACCGTGCGC-TTT-------------GCGGTCTCCTCATATAGCATTTCAAACTAATACG---TGAACGTTTACG---TAAGCAGa-ggaagtgagaaaaaactgatgaagGATTTC---AATT-GTGTGAGGTTTCATGAATGGACTAACCG----------ACGAATGAACTTTG---ATGTTGTGAA---------------------GTTCACAGAA------AATGAACTA-AAAGAAGCCATTGATATGATGAT---GAgaacaaaaatcattcaaGATAAACGAG--ATGCAAAAAAGCA------AAGTAATGAGCAATGGGGGATATTCGAGATGC-AAAGTGATAcggaa-atgaattgaaaaatgagatgaga
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3364735 358 +  4147112 AACAATTC-TACCGTGCGC-TTTTTTAGTTGCATG-TCTACCTCCGCATATAGCATTTTAGAACTACAGAAATCGAACATTTACGTCATAGAGAta-ggaagtgagaaaaaacgagTGAAACACTAC---AATTAATCAAAGGCTTCATAATTGGACTAAACG----------AGAAATGAACTCCA---AAATAAGGAAAGTCCAAAGAGGAAATCGCATGTACTCAGGAAGCCT-AAGAAACTCTGAGGAAGCCATTTTTGTGACGTG---AAGAACAAAAACCGATCAGAACGGAACAGTTATGC------GCA------AGATCATAAGCACATCTAGATATTTGAGAAGCAAAAGTGATCcggagcaaaaattgaaagatgaGATGAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   515827 793 +   591668 I

a score=3007.000000
s ce10.chrX              5121185 165 + 17718866 CGTTGGAGGGCGTTCAGACTCATTTTTC---------GCACTCGGCATATC--------AAA-TATTATT----TTTC------GAAGATG------------ACACCCCTCAACTATTTTCTCTGAGCCAATAGTAAACGGAGTATATATCTAAAT----------TCCT---CTGGGTATCAACTTTC-------------GAAAGAAACACAAACACAGTGTTCCCCA
s caeRem4.Crem_Contig0   1954905 166 -  4500979 CGATCGACGCc-----gactcatttttcttcact---gAACCCATTGCCTCCCCCAGATATTATGTTTTTCTTGCTTT-CCTAAGAAGACGAATAGTAGATGAATTTCTAAGAAATGA-----------------TGAACCCAATGTATATCTAAATGGCTGTACTTTTTT---CTGAGTATCACCTTTCTGTCC------------------------------------
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold567     80157 176 -   141584 CGATCGGAGGCGTTGAGTCTCATTTTTCTGCCCT---GAA--CATTGCTTC--------ATT-TATTATTTCTGTTCC-TATGAGTAGATG------------ATTCTCAAGAAATAT-------------ATAGTGAATTCGATGTATATTCAAATAACTCGACTATTTTTTGCCAAGTATCACCTTTCGTTCAGccgagaggaagaaaaaacaa---------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3365093 179 +  4147112 CGATCGGAGGCgttttgtctcatttttcttttttagagaA--CACTGCTTC--------ATT-TATTATTTGTGTTCCTTCTCGGAAGATG-------GTCATACTTCTAGGAACTAT--------------------ACTCAATGTATATCTaaatgaatggaa-atttt---ccaagtatcaCCTT-------Actcaaggaaaaaataaacaaa-agagAGCTTTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   515827 793 +   591668 I
e cb4.chrX              10449897 128 + 21540570 I

a score=-39644.000000
s ce10.chrX              5121350 135 + 17718866 TAGCAAGAGTACAACATGTAAAGCCAAATTTTTAGGAAAATCAGGATACGGCCTGTGA-AAAAAAAAATCGAAAATTATTCATAT-GGTGCTAGAATGAGCAAGTATCATAATAAATTTTCTCAAAAATAGTTTGAA-----------------------------------------------------------
s cb4.chrX              10450025 130 + 21540570 TGTTACGAGTACAAC------------------------------AAAAGGCATCAGA-ATAAAA---------------TATAT-GAAAT-------------------GCAAAGTGATCCAAGAAGGAACTGAAAGATGAGCTGAAATGCGTCGACTCATTTTTCCCGAACGCGCACACCCCCagatattgttt
i cb4.chrX              I 128 C 0
s caeRem4.Crem_Contig0   1955071 100 -  4500979 -Gtta-gagaaaaac------------------------------aaacaaaatatga-atgaGAGCTTCT-GTTTATTCTGTATCGGAAT---------------------AAAATGTTATAATAATAAAGCGTAA----AGCT------------------------------------TCctagaaattgaa-
i caeRem4.Crem_Contig0  C 0 I 147
s caeSp111.Scaffold567     80333  57 -   141584 -----------------------------------------------------------ataaaa-----------gcTTTGTAT-AACAA-------------------GTGAAATATGTTTTATATTAACAATGA----AGC-------------------------------------CTCTTGA--------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3365272  77 +  4147112 ------------------------------------------------CCGCTTATTACATAAAG--------AATATTTTATAT-AACAATGAA----------GCCTCTTGAAATA---TCTAAACTTACTAGGC----GGC-------------------------------------CGTCATA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   515827 793 +   591668 I

a score=-23863.000000
s ce10.chrX              5121485 195 + 17718866 AGCTTTTATTATGAGTCCAATTTTTCGAAAACGGTGATCAAAAAACATTTTTTTCCTTCaatttttttcaattatttttaaaattatgtaca------------------aaataatt--ttCCAACATAAAAAAAA-----------------AGTTTTAATCATATCCCACAGGATC----------------------CACCGTTAATGTA--------ACATAGATAAA---TTGTGACACACC-TTCGAAATAAACTTTAA----------------
s cb4.chrX              10450155 248 + 21540570 --tttttttcatctactGGACTTCTc--agaaaatgatgagaaa----------------------tTCGAATGATATCTAAATAAAATGGACttattcttctcatttctgaGTATCTTTTTTCTGTGTAGCTAACGATGAAAACAAACATGAAAATATTAATAGAAC----GGGGAATCTATGTAACATGAAAGCTAGGCGGCGGCAGTCATATGCAAATCAAGcgggaaag---ttttgaaataat-ttatgtatggaattgatttcaaaaaaagtttca
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold567     80390 122 -   141584 ----------AGCATTTGAACTGACT--AGTCGGT--------A----------------------TTC-----ATATGTAAATGAAGTGTA------------------AAG-------TTTCAATATAATTCATG-------------------TATGAATTAAA------ACGAAT----------------------GACGG----------------AAACGGGTAAC---TGCCCGC------TTTGGAATGAAAACtag----------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3365349 103 +  4147112 -----------------------------------------------------------------------------TGCAAATGAAGTGTA------------------AAG-------TTTCTATGTAATTTATG-------------------TATGATTTGAAT----GAGGAAT----------------------GACGG----------------AAAAGGGTAATAGATACTGACAAAGTATTAGGGTTGAAACCGAA----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   515827 793 +   591668 I
e caeRem4.Crem_Contig0   1955171 147 -  4500979 I

a score=-10993.000000
s ce10.chrX              5121680 116 + 17718866 AAAACCGAAAAGATGAGTCTGCCTGACCAAGGTTAAAA---TAAGAGACAGATGGCTTTTTATTTTGGTCGAATTCATTTAGTTTTGAGAATTGTTGCCATGAAGGC----ACAA-----------AAATCCAG
s cb4.chrX              10450421 118 + 21540570 aaaaccgaaa----------tttcgaatgaaatgaaaatggcAGATGGTAGATAAT---ACATCTCGGTTTAATTTAATTCATTCTGACAGTCGT---TATGAAACCACTAACAATTCCAAGGCCTAGGTCTAA
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   1955318 105 -  4500979 gaaaccgaaa-----------ttcgaaagatgtcaaaa----gaaTGGCAGATGGT---ACATTTCGG-----TTCGATTCATTCTGACAGTTGTTACTATGAAGACAGTGGTGA----ACATGCTGAGTC--A
i caeRem4.Crem_Contig0  I 147 C 0
s caeSp111.Scaffold567     80512  87 -   141584 -agatgaaaa-----------aggaattggtCaaaaaa-----aGATGCAGATGGTGGTACGTTGCGG-----TTCAA-------TGGCATTTATGACTATTATGT-----ACAG-----------AAGTC--A
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3365452  75 +  4147112 -AGATGG--------------------CGGTATaaaaa-----aaTGGCAGATGGTAGAATTCTGCGG-----TTCAGT------TGTTACCCTAGAACATTGG---------AA-----------TAGTC--A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   515827 793 +   591668 I

a score=158921.000000
s ce10.chrX              5121796 303 + 17718866 CGCCATCTGCGC----GCGCAGTTCATAAAAGAG---AAATGGAA--ACAAGC---GGGTTGCGAGGTTCAATGAAAAAGGATGCGA--TGTAGCGAGTTTGAGCACCTGCTCTGTCGCTT-----GGCTCG-------------------------ACCACAAGCATG--TC-TTTTCTTGCT--CATGCGGCGGCGTTACATGCTCGCA--TTTATTGATTTCTCCCCCcacacacagacacacacacatacatacactcacatacTGCGCGAGCCAAG-----AGCTCG-----------AGAGAAATACATGCATATATTACAACACATATTTTCAGATTATGAGAAAA-TGTGTG---------TCGGCAGTTTG
s cb4.chrX              10450539 322 + 21540570 CGCCATCTGCGC---------TTTCAAAGGC-----AAAAAGGAACAACAGAACCGAAGGTG-GTGGCTAAATGAAAAAGGATGCGA--TGTAGCGAGTTTGAGCACCTG--CTGTCGCGTAGCGGGGCTCGTCTACAACACCACCAC--CCTTACCACCAAAAGCATGTCTC-TTTTCTTGCT--CTCTC----CCGTTACATGGacacatttttattgatttcccTCTCG-------------------TCCTTTTTCTCA-ACACTGCGCGGGGTGTGAGAGAAGCTTGAATAGTGCCAGGGCGAAATACATGCATATATTAC-ACACATCGTTTCAGATTATGAGCAAAATATGTG---------CTAGCATTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1955423 250 -  4500979 CGCCATCTGCGC---------TTTT------------AAAAGGAAACATGGGCCCGGTGTTGCGaggtgaaatgaaaaaggatgCGA--TGTAGCGAGTTTGAGCACCTG--CTGTCGC-------CGCTCG-------------------------ACCACAAGCATG--TC-TTTTCTTGCT--CATGC----GCGTTACATGCTcaca--tttattgatttcccTCCGG--------------------------------GCATTGCGC-GGGTGCG-----AGCTTT----------GAGAGAAATACATGCATATATT---ACACATCGTTTCAGattatgagaaaa--atgtg---------ccggcattttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     80599 272 -   141584 GACCATCTGCTC---------TTTTAGAAATGAGCGAAAAAGGAA--GCAAGGCCGGTGTTGCGa-gttcaatgaaaaaggatGCGATGTGTAGCGAGTTTGAGCACCTG--CTGTCGC-------TGCTCG-------------------------ACCACAAGcatg--tctttttctttct--catgc----GCGTTACATGCTCACA--ATTATTGATTTCCCCC------------------------CTTTCTCCCA-ACACTGCGCGGGGTGAG-----AGCTCG---------AGAGAGAAACACATGCATATATT---ACACATCGTTTCAGATTATGAGAAAA-TGTGTG---------CCggcattttg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3365527 267 +  4147112 AACCATCTGCGC---------atttgaaaccaaaagaaaagagaa---caagGCTAGTGTTGCGAGGTTAAATGAAAAAGGATGCGA--TGTAGCGAGTTTGAGCACCTG--CTGTCGC-------AGCTCG-------------------------ACCACAAGCatg--tc-ttttctttct--catgC----GCGTTACATGCTCACA--TTTATTGATTTccccct----------------------tctttttcaca-aCACTGCGC-GGGTGAG-----AGCTCG---------AGAGA-AAATACATGCATATATT---ACACATCGTTTCAGATTATGAGAAAA---TGTG---------CCGGCACTTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   516620 293 +   591668 CGCCATCTGCGCGGCTGAGCGGCTGAGCGACCAGTGAAAATAAAG--AGAGACC----------AGGGCAAATGAAAAAGGATGCGA--TGTAGCGAGTTTGAGCACCTG--CTGTCGT--TGTCGTGCTCG---------TTGTCGCTGTCCGACGACCGCAAGCATG--TA-TTTTCTTGCTCACACGC----GCGTTACATACacaca--tttattgatttcctCCC---------------------------TTCTCG-TCGCT-CGC---GCGAG-----AGCTTC----------GAGAGCAATGCATGCATATATT---ACACATCGTTTCAGATTATGAGAATA-TGCATGTAGCATTTTTCGGCACTTTG
i caeJap4.Scaffold17934 I 793 I 968

a score=-5695.000000
s ce10.chrX              5122099 34 + 17718866 AAACAT----------TTCC----GGGA--TGAGAGTATAAAGTTGTTCG----------
s cb4.chrX              10450861 29 + 21540570 AAACAT----------CTTC---TGGGA--AGAAAGTAT---------------AAAGC-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1955673 46 -  4500979 aaacat----------attc--gTATGA--GAAGTGTATCATAGTTTTTGCCTCAAAACT
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold567     80871 43 -   141584 aaacat----------tttcccGGATGAGTTGAATATATAAAAGTTTTGCTCG-------
i caeSp111.Scaffold567  C 0 I 10
s caePb3.Scfld02_0       3365794 45 +  4147112 AAACATACTTTGAGACGTTTCCGGAGGA--TGAGCATATTCAAAGTT-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   516913 968 +   591668 I

a score=0.000000
s ce10.chrX              5122133 7 + 17718866 TATCTTC
e caePb3.Scfld02_0       3365839 0 +  4147112 C
e caeJap4.Scaffold17934   516913 968 +   591668 I
e cb4.chrX              10450890 1 + 21540570 I
e caeSp111.Scaffold567     80914 10 -   141584 I
e caeRem4.Crem_Contig0   1955719 5 -  4500979 I

a score=6193.000000
s ce10.chrX              5122140 139 + 17718866 AAGTTGTTTGTGAAAATTTGTTTATATCTATTGTTAGGAACGGAGCAAGC----------GAACAACAAAATAA-------AAAAAA--------AACATCTGCGATATATATGTCTGCTA--TGTA--------TAATCTAATACAACTTTTCAGACGAGATGATTTGTTTTC
s cb4.chrX              10450891 134 + 21540570 AAGATGTTtgaata--------------------aagaagaagaacatg-----------gGAACATAACATAGtg-----acaaaagaaaaaacaacatcAGCGTTACAGATGTTtgtta--tggaaaaaaagaaatgcaaAAGCTCAATTTCAGCCTCTAG--TTTGTTTTT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1955724 119 -  4500979 AGTATGTTTGGAAATC--------------TTATTGGGGAAAAAACATG-----------TTAACAAAACATAGCC-----TCAAAA--------AACATCAACG--AGATCTGTTTACTA--TGTA-------------TAATGCgcaatttcagctgaaagGATTTGTTTTT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold567     80924 123 -   141584 AAGATATTTGGGAATATT------------TTCGAAGGAAGGGAATATG-----------GGAAAATAGTATAGAC-----AAAGAA--------TATATCAAGG--ATTTCTGTTTACCATGTATA-------------TAATGCacaattctagaaaaagagatttgtTTTC
i caeSp111.Scaffold567  I 10 I 97
s caePb3.Scfld02_0       3365839 123 +  4147112 ------GTTG--------------------CTCGCCAGAAGGGATGATGTTGATGCTTGAGAAAAGCATTGTGAACTTgggaaaata--------tacaaaaacg--ATATCTGTTTACGA--TACG-------------AAATGCTCAATTTCAGACATGAggatttgttttt
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold17934   516913 968 +   591668 I

a score=-11651.000000
s ce10.chrX              5122279 20 + 17718866 -----------------------------------------------------------------------------CACAGAAAAAGGAATCAAAA-----------------------
s cb4.chrX              10451025 94 + 21540570 CAGCTGTCAGCAGTTTGTTCTTTGTCAAGTTGTCTGTCAAGTAACA----------ATCaag--tcactttttttttcaaaaaagaaggtaTTAATTTGAACC--------------AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1955843 87 -  4500979 CAGCTGTCAG---------------------------------TCGTCTGTGTTATGTCAAgcttcaagttttttattagaaaaaaagaagtaagaaGGAAACAACAGGGTTTCCGTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3366029 20 +  4147112 -----------------------------------------------------------------------------caaagaaaaaggag-----gggAAA------------------
i caePb3.Scfld02_0      I 67 I 201
e caeJap4.Scaffold17934   516913 968 +   591668 I
e caeSp111.Scaffold567     81047 97 -   141584 I

a score=-2401.000000
s ce10.chrX              5122299 48 + 17718866 ACTCAAATACGTTTTTTCGTCTTGCAAGTGGAAGCTTAGCAAGGAAGG
s cb4.chrX              10451119 22 + 21540570 GCTC--------------------------GGAGATTTGCATAGGCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1955930 32 -  4500979 GATCAAGAA----------------AGAGGGGAGGTATATCTGAGCTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3366049 201 +  4147112 I
e caeJap4.Scaffold17934   516913 968 +   591668 I
e caeSp111.Scaffold567     81047 97 -   141584 I

a score=6198.000000
s ce10.chrX              5122347 14 + 17718866 GGTCAAGTGGGGTA
s cb4.chrX              10451141 14 + 21540570 GGTCAAGTGGGGTA
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig0   1955962 14 -  4500979 GGTCAAGTGGAGGG
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold567     81144 14 -   141584 GGTCAAGTGGGGTC
i caeSp111.Scaffold567  I 97 C 0
e caePb3.Scfld02_0       3366049 201 +  4147112 I
e caeJap4.Scaffold17934   516913 968 +   591668 I

a score=-3247.000000
s ce10.chrX              5122361  79 + 17718866 ---------------------------GGGGTCGCCT-ATCTGCCATCCACCTTAATTC----GACTCGA-CAGAACAGT-------------TC------------TTGGTC----GGAATTTT--TTGTTGAT-------AAAAGTTA-
s caeRem4.Crem_Contig0   1956009  83 -  4500979 ---------------------------AGGGTCACCTCATTAGTTAT-----TTGGTCCCCCTTTCCCGACCAGAATAATA---------AAATC------------TAGGTT----TGACCTC---TCCTTGAC-------AAAGACTT-
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold567     81158 144 -   141584 GGTGACGGTCCGGCAAGCGGCTAAGGGGAGGTCTCCTCATTAGTTAT-----TTGGTCCGC--GACCCGGCCAGAGtaataataataaagaaATCTCAATGGCCTTATAAATTTCTATgccttctgatttttgacaagttcaaaaaactaa
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3366049 201 +  4147112 I
e caeJap4.Scaffold17934   516913 968 +   591668 I
e cb4.chrX              10451155 218 + 21540570 I

a score=-3463.000000
s ce10.chrX              5122440 109 + 17718866 -----------ATGTTTTC--TCAGAAAAAAAGAAC----------------------------------------------------TTT------CCAGCAAACCTCACGTGAACGGGGAA-AAACGGAAACCTATTTGATAAGGGTTTCCGAAAGAACAACT----TTGACGTTTTGTTT-----GA
s caeRem4.Crem_Contig0   1956092 165 -  4500979 TTGTAATAAATCTGCAATCCttcgaggaaaaaagaaaactgagtTCACTAAATCATTTTCATCTGTGATAAAAAAGGAATGTCGAACTTTTTAGATGACTG-----GTGAG----AAAGGACAAAAACG--------ATTGATAA-GGTTACCAATAGAACAACGATAACTGCGACATTCTTA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     81302 101 -   141584 -----------atgtTATCGTTCCGACAAAGGAA------------------------------------------------------TTT------GCAG-----GTCATGATAACACGGCA--AACG--------CCTGATAA-GTTAACCAAAAGAACAACG--AATCTCCTTATTTCTCATAATGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3366250 103 +  4147112 -----------CTGTTATCACTTGGACAAAAGAGAA--------------------------------------------GTGGAACTTTT------GCAG-----GTCAC----ATATGACA-TAACG--------TTTGATAA-GGTTACCAAAAGAACAACG----TTGtcttattcttt---ttga
i caePb3.Scfld02_0      I 201 C 0
e caeJap4.Scaffold17934   516913 968 +   591668 I
e cb4.chrX              10451155 218 + 21540570 I

a score=-8454.000000
s ce10.chrX              5122549 332 + 17718866  
s cb4.chrX              10451373 396 + 21540570  
i cb4.chrX              I 218 C 0
s caeRem4.Crem_Contig0   1956257 394 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     81403 393 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3366353 337 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   516913 968 +   591668 I

a score=160217.000000
s ce10.chrX              5122881 361 + 17718866  
s cb4.chrX              10451769 433 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1956651 374 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     81796 412 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3366690 382 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   517881 374 +   591668  
i caeJap4.Scaffold17934 I 968 I 263

a score=16549.000000
s ce10.chrX              5123242 26 + 17718866 ATATCGTGGGATTGTAA--ATGAGACGC
s cb4.chrX              10452202 28 + 21540570 ATATATCGAGATTGCATAAATGAAACGC
i cb4.chrX              C 0 I 89
s caeRem4.Crem_Contig0   1957025 26 -  4500979 ATATCTCGAGATTGCAT--ATGAGACGc
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     82208 26 -   141584 ATATCTTAAGATTGCAT--ATGAGACgc
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367072 26 +  4147112 ATATCTTGAGAATGCAT--ATGAGACGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518255 263 +   591668 I

a score=5646.000000
s ce10.chrX              5123268 38 + 17718866 ------------AAGATGTATGAA-ATGAGGATCATGCAGAATGAGGTTAG
s caeRem4.Crem_Contig0   1957054 48 -  4500979 ---aaaacgaataaattgGAAGAAGATGAGGATCATTGGAAATGAGGTTAG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     82234 51 -   141584 aaaagaatgaatgaaatgaaagagtaTGAGGATGATTCAAAACGAGGTTAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367098 33 +  4147112 AAAACAATGA--GGATTGAATGCG----------------AATGAGGTTAG
i caePb3.Scfld02_0      C 0 I 243
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I

a score=355.000000
s ce10.chrX              5123306 5 + 17718866 ACGGT
s caeRem4.Crem_Contig0   1957102 5 -  4500979 GCTGT
i caeRem4.Crem_Contig0  C 0 I 228
s caeSp111.Scaffold567     82285 5 -   141584 GCGTT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3367131 243 +  4147112 I
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I

a score=58.000000
s ce10.chrX              5123311 35 + 17718866 TGAATACAGTTGTTCAATTTGAAAAATTTTGTTTT
s caeSp111.Scaffold567     82290 29 -   141584 AGTCCACA------TGACGTGTAaggtttcatttt
i caeSp111.Scaffold567  C 0 I 181
e caePb3.Scfld02_0       3367131 243 +  4147112 I
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I
e caeRem4.Crem_Contig0   1957107 228 -  4500979 I

a score=0.000000
s ce10.chrX              5123346 859 + 17718866  
e caePb3.Scfld02_0       3367131 243 +  4147112 I
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230  89 + 21540570 I
e caeSp111.Scaffold567     82319 181 -   141584 I
e caeRem4.Crem_Contig0   1957107 228 -  4500979 I

a score=228.000000
s ce10.chrX              5124205 6 + 17718866 AACCTA
s caeRem4.Crem_Contig0   1957335 6 -  4500979 AAACCA
i caeRem4.Crem_Contig0  I 228 C 0
e caePb3.Scfld02_0       3367131 243 +  4147112 I
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I
e caeSp111.Scaffold567     82319 181 -   141584 I

a score=-16.000000
s ce10.chrX              5124211 34 + 17718866 -TCATTCTTCGAATGCGGGTC----TTTGAAATTG----AACA
s caeRem4.Crem_Contig0   1957341 38 -  4500979 -TTTTTCATACGAGGCAGGTCTGATTTTGAAGTTGGCGG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82500 34 -   141584 ttgtttccTG-AATGTGGGTCTAACTTTGAAAGCG--------
i caeSp111.Scaffold567  I 181 C 0
e caePb3.Scfld02_0       3367131 243 +  4147112 I
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I

a score=-1098.000000
s ce10.chrX              5124245 4 + 17718866 GGCG-
s caeRem4.Crem_Contig0   1957379 4 -  4500979 -GACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82534 3 -   141584 -GCC-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367374 4 +  4147112 GGTC-
i caePb3.Scfld02_0      I 243 C 0
e caeJap4.Scaffold17934   518255 263 +   591668 I
e cb4.chrX              10452230 89 + 21540570 I

a score=4140.000000
s ce10.chrX              5124249 11 + 17718866 ATTTGTCACAC
s cb4.chrX              10452319  9 + 21540570 ATTTGTC--AC
i cb4.chrX              I 89 C 0
s caeRem4.Crem_Contig0   1957383  9 -  4500979 ATTTGTC--AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82537  9 -   141584 ATTTGTC--AA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367378 10 +  4147112 ATTTGTCA-AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518255 263 +   591668 I

a score=83617.000000
s ce10.chrX              5124260 195 + 17718866 AGATCGGATGAAGGGATAACTAATTACA--CGAATCTTTTAGG---TAG---------------------------ACAAAAGGAGTTGCGAAAAAAAAACCGAAAAGGTCATCTGTACTTAGTCAACGACTGA-------ACGCATG--GAGGAT----GAATATGAA------------TGCAAATAG-AAT------TCAACCGAATTTCAGTGAATAA--GGGTAATGGTGCGAGAAATGAGGTTGTTGAATAACAC
s cb4.chrX              10452328 205 + 21540570 AGACCGGATACAAGGATAACTAATTAccaaaacgccgttgaaactttta---------------------------aaaggaagaaaagaatgaaacGAGTT-GAAAGGTCGCCCGTATTTAGCTACCGAACAA------TAAGAATGAGGAGAAG----GAATGGGG-----------------AATGG-GTGATGTGCTGTGTTGAATTTCAGTGAATAAGGGGGTAATGGTGCGAGAAATGAGGTTGTTCAACAACAC
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig0   1957392 207 -  4500979 AGATCTGATGGAAGGATAACTAATTGTT---ACTGTCTTGAAGATTTGA---------------------------ATACGATG-GCGTCGCAAAACGAAAT-AAAAGGTCGTTCGTATTTAGCCACGGAACCA------GAAGAATGGCGAgaag---aaaatgggga----aaacgATGAGGAAATGG-GTG------TCTGTTGAATTTCAGTGAATAA--GGGTAATGGTGCGAGAAATGAGGTTGTTGAACAACAC
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold567     82546 205 -   141584 AGATGGCAAAAAAGGATAACTAATTA----CGAGTCGCTAAAAGTTTGA---------------------------ATACAAAGGCTG-----------AGT-TAAAGGTCGTTCGTATTTAGCTACGGAACAAGACATGAAAGAATgacgagaaaagaagaatttgga----AAACGATGAGGAAATGG-GTG------TCTGTTGAATTTCAGTGAATAA--GGGTAATGGTGCGAGAAATGAGGTTGTAGACCAACAC
i caeSp111.Scaffold567  C 0 I 4
s caePb3.Scfld02_0       3367388 212 +  4147112 AGATGGGAAAAGAGGATAACTAATTACC--CGGGTCtctaaaactttga---------------------------atacAAAGGCGGGTTGCAAACGCACT-AAAAGGTCGTTCTTCTTTAGCTACGGAACAA-----GAAAGAATG--GGCGAGAGAAGAATTGGGAAACGAAACGATGAGGAAATGG-GTG------TCAGTTGAATTTTAGTGAATAA--GGGTAATGGTGCGAGAAATGAGGTTGT---TCAACAC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17934   518518 214 +   591668 AGATCAAAAGGAAGGATAACTAATTA----CGTTTCTTTAAAAGTTTGAAGAATGACGGCCGGCGAGAGGTAGGGTAGACAATGGAAATTGTGAAATG-GCT-AAAAGGTCGTTGGT--TGGTCTGTGGGAGGT------------TGTGGTGAAA----AAGTAGGAA-----------------ATGGTGTG------TCTGTTGAAATTCAGTGAATAAGAGGGTAATGGTGCGAGAAATGAGGTTGTTGAACAACAA
i caeJap4.Scaffold17934 I 263 C 0

a score=-2961.000000
s ce10.chrX              5124455 27 + 17718866 T-------------------CTCCGTAGTGCTGGGCAAAGGAAGAC
s caeRem4.Crem_Contig0   1957605 27 -  4500979 T-------------------TCATGTGTGGGTGGGAATGAAAAGGA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold567     82755 36 -   141584 TGGTGTAT----------GGGGGTGTGTGGGTGAGAATGTTGAGGC
i caeSp111.Scaffold567  I 4 I 1
s caePb3.Scfld02_0       3367604 27 +  4147112 T-------------------TGGTGTGTGGGTGGGAATGAAGAGGC
i caePb3.Scfld02_0      I 4 I 3
s caeJap4.Scaffold17934   518732 42 +   591668 --CCGCATTTGTGAAGAGGGTGAAATGTGTGGGCGAACGAGGAA--
i caeJap4.Scaffold17934 C 0 I 7
e cb4.chrX              10452533 49 + 21540570 I

a score=19119.000000
s ce10.chrX              5124482 69 + 17718866 AGGAATGGATGGATTACATAAAG--AAA------ATAGAATCAAATGTGC----------GCGGGGAACAGTCGAC----------ACCCAGCTGCT
s cb4.chrX              10452582 97 + 21540570 AAGGATGGATGGATTACTTATTGGCAAAGAGAGAGATGAATCAAATGAGCGGCTGGTCTGAAGGATAACAGTCGCAGGGAGTTCTCGTCCAGCTGCT
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig0   1957632 87 -  4500979 CGAAAAGGATGGATTACATATTG--AAAGGATGGAATGAATCAAATGTGC-GCGGGTAAGCGAGAGGATTGTCACTG-------TCGCCCAGCTGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82792 74 -   141584 ATGAATAGATGGATTACATTTGG--AAAGA---GGATGAATCAAATGTGC-------GCATTGG-GAACAGTTGAA----------ACCCAGCTGCT
i caeSp111.Scaffold567  I 1 C 0
s caePb3.Scfld02_0       3367634 74 +  4147112 ATGGATAGATGGATTACATATTG--AAA------GATGAATTTGGCGTGC-------TAAGAGGAGAACAGTCGCA--------TTACCCAGCTGCT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17934   518781 70 +   591668 AGGATTGATCGCATTGCATAAAT--GAAAC----GATGAG---GATGTGC-------CTGCTAGGAAACAGTTGCA-----------GCCAGCTGCT
i caeJap4.Scaffold17934 I 7 I 6808

a score=-16293.000000
s ce10.chrX              5124551  98 + 17718866 CACTGTTTTGGTGAAATGATTGGAGAGAGG-CAG----------------ATGT-----GTGAGCAGATTTTGGGGGCCA-------------GTAGTTG-----------------TTGCTGT-TTCATTGAAGAGAAGAAGTGGAATAA
s cb4.chrX              10452679  87 + 21540570 C-CTGTTTGAA--------ATGAACAGATGTGAGGACattgtgtgtatgtgtgt-----gtacGTGGAATTTTGGAGTGT-----------------TTC-TTTGTCAAGAA-----TTGGGGT---------------------------
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   1957719  73 -  4500979 CACTGTTTA------------GAGGAGGTGGCAG----------------ATGT-----GGACGTGGATTATTAAAGGat-----------------tct-tgagaaaataaaatgtttgatGA---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82866 102 -   141584 CACTGTTTAGATGGCAGT-TCAAGGAGAGG-CAG----------------ATGT-----CTACAT-GAGTTTCGAAGGAT-------AAATATGTGGTTTCTGTGGT----------TTGTTGTGTC--TCGAAA--ATTGTTTAGA----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367708 115 +  4147112 CACTGTTTATATGACATT-TCAAGGATATG-CAG----------------CTGTGTTGGGTACGTGGAATTTTGAAGGGTGAAGTGGAAATGCGCGGTTT-TGTGGT----------TTGTTGT-TT--TAGAAATCATTATGTAGG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=-1398.000000
s ce10.chrX              5124649 33 + 17718866 AACATTTAAAAATAGAAATCGCAAAGTTTTCAA---------
s caeRem4.Crem_Contig0   1957792 31 -  4500979 --------ATCACAAAAGATGTAGTG---ACAAAATTGGCAc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82968 27 -   141584 ---AGGTAAAAATAAcacattcaaaa---acca---------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367823 28 +  4147112 --Caggtaaaaacaaaaaactcaagg---ACAA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10452766 26 + 21540570 I

a score=-384.000000
s ce10.chrX              5124682 42 + 17718866 AGCTTTTGTTTA--AAGAAAATGACCGGAAAGGAATGCCCTTTT-------------------------------
s cb4.chrX              10452792 37 + 21540570 AGccattgttttcagaaaaaattaccggaaa--------------taaaa------------------------a
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   1957823 70 -  4500979 --cttttgtttt--gagaaaattgccGGAAATGGTTGGTTCTT-GTAAAATgttgttttgaatgtttcaaagtTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     82995 41 -   141584 tgcttttgtttg--aaaataattaccGGAAGAAGTTCgacttt--------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367851 42 +  4147112 CTCTTTTGTTTG--TCGGAAACCGCCGGAaaatcatttcctttt-------------------------------
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=-2416.000000
s ce10.chrX              5124724 15 + 17718866 CAAATA--------GTAGGCGTT
s cb4.chrX              10452829 16 + 21540570 aaaa-------tatgtaggtgtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1957893 23 -  4500979 CAAATATCACCTATATGCTTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     83036 17 -   141584 ------cagtttttgtgaGCTGT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3367893 42 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=-2345.000000
s ce10.chrX              5124739 6 + 17718866 TGATAA-
s cb4.chrX              10452845 6 + 21540570 ttagaa-
i cb4.chrX              C 0 I 1222
s caeRem4.Crem_Contig0   1957916 6 -  4500979 TTGAAA-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     83053 5 -   141584 --GAATG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367935 6 +  4147112 -TGGAAA
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=-30534.000000
s ce10.chrX              5124745 172 + 17718866 -----------------------------------------CA-TGAACAATC--------ATA---------------------AAGCAGAA-------------------------------------------------------------------------------AAATTATTATGTCACAGCGACACACG-TCAGTTTTTG----TGTTC-----------------------------------------------TCTTCC-----TGGACAAAAATGA-------ACA-----AAAAATTTTACTTTTAATGACAGGTTAAGG-------TGTGCTC-----------------TTGTATGGAATGCGTA---------------GGATGGATACAAAGTGTCAGGTGCTGGTGTCTTT
s caeRem4.Crem_Contig0   1957925 371 -  4500979 ---CTTTGATAATGGT-TTAA---AAAGAATTCCACTTTCCTA-CCGTATGTC----ACAACTA---------------------CGTCATGT--------TTGTGTCTACCGTATACCTCAATCTGAAACCtataattcaaaataaatatttgtttgGAAGAATGTACTCCAGATTTTGGTGTCA-ATTGGCA-ACA-TTCCTCTTCC----TGGCACCAAGTGGCACCTCTCTATGGaatcactttttgttgttaaCTTCAcgtcattcattttttgaaaaaaagaaaagaaataaaatcaaaatgatgtGACATTTCTTGTGAGATTATAGCATG---TGCTCTCATTCCACaccttcaattttgaaaagaattat-a-ttttttcgaac---aaaaggATACGAAATGTCAGAATCTGCCGTC---
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     83058 327 -   141584 ACAGGAATATTGTAGT-TACAGTCAGAGAATGTTAAGATGTTACTTGGAACTCTCTAGCTCCTATAAACTGAATTTTAATTCTCCTTTTAAACCACATGATCAGTTTCTACCATA-----------GAGAGTGACAGGC-----------------------ACCGACTTGCAGATTTTT-------AATGACACACC-TCCATCTTTTCTAATGTTA----------------------------------TTCTTACATCACTTCTTCCACATTCCAACAAAAAGCA-------TTTATAGGAGTGATGTGAGTTTGATTATGAGTC------------TGATTTCAATTGTCGGCTTCAATTTCGAACAgattgatca-ttttttgaatc---ggcAGAGTACAAAATGTCAGAATTTGTCTTG---
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3367941 305 +  4147112 CGTGAAAGATTACGGTATTCTCTTGACTCATTTGGATGTGTTA-TCGAAGTTCAATGACAAATA---------------------TTTCAGAC----------------------------------AGAATGACAGCT----------------------AACTGactttcagcttttc-----a-aaTGACACACCTTCCCACTCCCCCAATGTTGTT--------TTTGCCCAT--------------TTTCTCACATCACTTCCTac---tttcagcaaaaaaaa-------acaattagaatgATGTGA-CATGATTATAGGATGACAGCAAAAGGTGTGCTCCATCTTCAccttcagttttcaatagattgatcacttttttaaaGCGAAGAAAGGATACGAAATGTCAGGGTTTG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10452851 1222 + 21540570 I

a score=44827.000000
s ce10.chrX              5124917 91 + 17718866 ATGTGGTTTTGTCAAAAGTGACATATGGCTTACCGAATTTGTCTTCT--TGAAAAAAGTGAGACCTTGGGA---G---AGAAAAACAAGCGGATGTAAA
s cb4.chrX              10454073 92 + 21540570 ATGGATTCCTGTC-AAAGTGAAATATGGCTGA-CGAATTAGTCTTCT--CGAAAAAAGTGAGACCTTGGGA---TACAAAAAGGACAAGCGGATGTAGA
i cb4.chrX              I 1222 C 0
s caeRem4.Crem_Contig0   1958296 89 -  4500979 AGGGACTTTTGTC-AAAGTGACATATTGCTTA-CGAATTAGTCTTCT---aaaaaaaGCGAGACCTTGGAA---TAC-GAAGGGACAAGCGGATGTGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     83385 93 -   141584 TGGGGGCTTTGTC-AAAGTGACATATGGTTTT-CGAATTAGTCTTCGtctaaaaaaagtgagaCCTTGGGA---TGC-CAGAAGACAAGCGGATGTGAA
i caeSp111.Scaffold567  C 0 I 5
s caePb3.Scfld02_0       3368246 94 +  4147112 -GAGGGTTTTGTC-AAAGTGACATATGGCTTA-CGAATTAGTCTTCGTCC-TAAAAAGTGAGACCTTGGGATACTGC-CGGAGGACAAGCGGATGTGAA
i caePb3.Scfld02_0      C 0 I 909
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=32.000000
s ce10.chrX              5125008 2 + 17718866 CG
s cb4.chrX              10454165 2 + 21540570 TG
i cb4.chrX              C 0 I 448
s caeSp111.Scaffold567     83483 2 -   141584 ag
i caeSp111.Scaffold567  I 5 C 0
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeRem4.Crem_Contig0   1958385 0 -  4500979 C

a score=-13306.000000
s ce10.chrX              5125010 236 + 17718866 GATACTGGGAAA--------TTTGAATGTTATGTTCCGATTTGTTCATAAATCAGGCTTGTTATCAAAACTTATATTTTTGTTTAAGAGTTGTTTTTAATGTTGACGTAAGATTTAACTAATGAGCGGCTTTAACTA-------CAAGACTTCT-----AAAAAAAAG------------------------------AGATTTTGGGAA-AGAACTTGCAGGACATTCTTAGGCATTTACTAAGTAACAAAAACATCATCAAAATATTGAA--GACAA--ATTT--CGAATT----------------
s caeRem4.Crem_Contig0   1958385 128 -  4500979 AAGACCAAGAAGATGACA--TGTATAACTtatgttc------------------------tttttgaaac--------------------------------------------tgaccaa-----tgtt--------------cgaga----------aaattgaat------------------------------tgtgtATCAAAA---ACCTTGCAGATTAAT---------------------------ATTTTCCACAAATTCAA--GAaca--attc--agaatt----------------
i caeRem4.Crem_Contig0  C 0 I 171
s caeSp111.Scaffold567     83485 249 -   141584 aatattcgaaaaacgacATCTATATAAGTTATGTTCAGA-------------CAGAC-CAATGTTCAAAC---------------------------AGCGCTAAAGTTATCAATAACCAA---GCTGCTTTAACTTTTTGGCACGAGACTCTATTTGGACATCGAACAGTTTCATGGATGAGGGTTCTTGCCATACATGATTATTAAAACAGAGATTCCGTCTTATTCATCG-----TACT-----------TCCTTGTCTACAAATTAGATTGAACATCATTCTAATAACTCTAGGGAAACATCATT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I

a score=171.000000
s ce10.chrX              5125246 14 + 17718866 TTAAATTAGGTGta
s caeSp111.Scaffold567     83734 14 -   141584 CCAAATGAGAATCA
i caeSp111.Scaffold567  C 0 I 109
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I
e caeRem4.Crem_Contig0   1958513 171 -  4500979 I

a score=0.000000
s ce10.chrX              5125260 161 + 17718866 ggccataggcgtaagccataggcgtaagccataggcgtaagccataggcgtaggccataggcataagccataggcgtaagccataggcgtaggccCTGTGCGTAGGTCACAGACGTATACCAATGCCTAATATTCCCCAGCAGTCGTCAGCACTTTAATGA
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I
e caeSp111.Scaffold567     83748 109 -   141584 I
e caeRem4.Crem_Contig0   1958513 171 -  4500979 I

a score=119.000000
s ce10.chrX              5125421 56 + 17718866 AGATTTGCTTTT----AAATTTTCAGAGAGACGTTTTTCATGTTCAAA--AAGCTTTCCCGA
s caeSp111.Scaffold567     83857 58 -   141584 ACATTTGATTCTTTGGAAAATGTCTAAAATAAACTTCTGATAATCCAACGAAGCAT----GA
i caeSp111.Scaffold567  I 109 C 0
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I
e caeRem4.Crem_Contig0   1958513 171 -  4500979 I

a score=-2564.000000
s ce10.chrX              5125477 37 + 17718866 AATGTTTCGAAAAGGTTTTTCAAGGTTTTTCTTTGAA-
s caeRem4.Crem_Contig0   1958684 20 -  4500979 ------------------AGTGTTCTGTTCTCATCGAC
i caeRem4.Crem_Contig0  I 171 C 0
s caeSp111.Scaffold567     83915 29 -   141584 --------AATAAATCTTGATATGATATCTCTTTGGA-
i caeSp111.Scaffold567  C 0 I 252
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I

a score=-249.000000
s ce10.chrX              5125514 133 + 17718866 AATTTTTAATTACGCTAATACGTGTAAGGAATCTGAGGAAACATTGTGATAAAA---AATGTAAGATCTCTTTTGATCAATTTTTCGCGTTTTTTCTCAATTATGTCAAAAATACATGACATATAAGATAAGCCTC
s caeRem4.Crem_Contig0   1958704  98 -  4500979 CATTAATCATCA-----------------AATCT-------CCtcatcatcaaattttttgtaagatCTCTTTC-----ATCCTTCGTG-------ACAA--ATGTCTAAAATAGAAATCTCATAATGCGATGTTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3368340 909 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I
e caeSp111.Scaffold567     83944 252 -   141584 I

a score=1455.000000
s ce10.chrX              5125647 16 + 17718866 TTTTATCAGATC--TGAT
s caeRem4.Crem_Contig0   1958802 15 -  4500979 -TTTATCAAAGT--AGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3369249 18 +  4147112 TCCTATCAGATTTGAGAT
i caePb3.Scfld02_0      I 909 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10454167 448 + 21540570 I
e caeSp111.Scaffold567     83944 252 -   141584 I

a score=-430.000000
s ce10.chrX              5125663 153 + 17718866 ATAAGA-ACATTTTTATCATGTTATTTTGAAGATGGATTAGTGA------CGGAAATCTGGTGCCAGGTACACGGTTTCACTAGAGGA-----AAAACATTGAT--GCTCTACA-TTTTTT-----TTTCTGCTTGACATGATA---ATTTTGTTTG-AGGGAT-----------------------TGTATCTTGAAAT--------------
s cb4.chrX              10454615 149 + 21540570 ATCAGA-ACAATCCTTCCATGATATCTTG-TCACGGATTAGTGA------CGGATATCCGGTGCCTGGCACC---------------------AAGTCGAAAACATGCTCTACG-TATGA------GATTTTGGTGCCAGGGCACGGATTCTGATT--AGGGAT-----------------------CATGTC----AAAAAAGGGGTACAAAT
i cb4.chrX              I 448 C 0
s caeRem4.Crem_Contig0   1958817 206 -  4500979 ATAAGACGAAATCTTGTCATT-TCTCTCG-CTTCGGATTAGTGACGCTGGCGGATATCCGGTGCCAGGTACCGGGCTCCTCCGAAAAGCAGAGAAACCAGAGATTCGTGATGcg-tcttct-----gttttttttaacatgATTTTGATTTCGCTTGAAGGGATTTTCTGAGAACGCAACAGAATCGCATACCATGGATAAACAGAATACAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3369267 138 +  4147112 GTAAGAAGAAATCTT-------CATCT---CTTTGGCTTAGTGA------CGGATTTCCGGTGCCAGGTACCCGGCGCCTCGGGA--------TAAATATGCATACGTGAtgctctcttctttctctcttttctcaatatagttttcattttgtttgaagGG----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeSp111.Scaffold567     83944 252 -   141584 I

a score=-27927.000000
s ce10.chrX              5125816  27 + 17718866 TCGAAA------------------------------------------------------------TATTAGACA------GA-AACCAACTAG--------------------------------------------------------
s cb4.chrX              10454764  65 + 21540570 CTAAGA----------------------------------------------------------------TGACAAC----GTCAGCAGATCAGATCTATTCT--ATC---------------AGATTCGTTCCTGGTTCACATTTCTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1959023 148 -  4500979 TCAACAACGTCACGTACCTTTAAGTCAGAACTACGTCTTCTTACGTATTCAGAAGGATCCTTTACCTCTTTGACAACTGGGGAAAAGGGAtgtgaacaattttcaattaaaaaagagaacgagAGAGTAAGACC--GTTTGAACGACCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     84196  16 -   141584 ------------------------------------------------------------------------aca------aatgatgaaatgg--------------------------------------------------------
i caeSp111.Scaffold567  I 252 I 11
s caePb3.Scfld02_0       3369405  21 +  4147112 -------------------------------------------------------------------ATTTGACA------GAGAACCAACCAG--------------------------------------------------------
i caePb3.Scfld02_0      C 0 I 213
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=-3678.000000
s ce10.chrX              5125843 11 + 17718866 AAACATTAAAA--------
s cb4.chrX              10454829  9 + 21540570 ------CTGAA--ATGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1959171 11 -  4500979 ------ACAAATGATGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     84223 11 -   141584 --------aaaagaggaag
i caeSp111.Scaffold567  I 11 C 0
e caePb3.Scfld02_0       3369426 213 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=77651.000000
s ce10.chrX              5125854 248 + 17718866 ------------------------------ATA---------------------------GATTTAAAATGAACAAATCAT---TTGTTTCGTGAAACAATGAACAGGCAAAA--------A--ATTTGAAAGCAATGGGAAACGACA--G---------CGCCAGTAATGGTTCAGCAATTTTCTTTCAG-----AGTGAACAAGAC----AGATGAATGAGAAC-TTTTCATGG------AAAAAGAGCA-------CGAGATCCTGCTTTTTTTGTTCTGGAATAGGGTTTAGC------GTGACCAAAGTATGGGAAAC-GAATGAGAAGATA-------------------AAGGGAAGTGCGTCAAGGGAAA
s cb4.chrX              10454838 366 + 21540570 AGGGGTTTGATGTTTCAAATGTGTAAACACACCAAATGCAAAGTGCATGGCGAATGAAAAGCCGAGGGgtgaacacatttt------ttaaaataaataataTATGACAAAACGaatggtgagtttttgaaaacgatGGAAGACGACACGACTATTTGAGGACGAGTAATGGTTCTgcaattttctttcagaagaaaaagagcaagacaAGGGACTGTATGGGAACTTTTTGACGGAGCaaaaaaaTGGGCATGCTAAGCAAAATC------GCTTTGCTCGGGAATGGGGTCAGTCTTTGCGGTGACCTATGCATGGGAGAGTGAATGACaggaaaagcaaaaaaaatagagaaaaaaggaaatgcgTCCAGAAAGA
i cb4.chrX              C 0 I 1738
s caeRem4.Crem_Contig0   1959182 306 -  4500979 ATAGGATgg------caaatgaaaaaagagatc---------------------------gCTTTGGGATGAacgcatttttttttgtttcgataaATAATAGATGGAAAAACGAA-----AGGGTTTGAAAGCGATGGGAAACGACA--GCCATT----GCCGAGTAATGGTTCagcaattttctttcag-----agagGACAAGAC----GGATGAATGGGAAC-TTTTGACGG------AAAAAGAGCA--CTGAGCAAGATC------TTTTCGCTCTGGAATGGGGTCAGCCTACGCGGTGACCTATGCATGAGA----GAATGACAGGAAGacggggaaaaaagaaaagaaaaggaaatgcgtcaagcgatt
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold567     84234 239 -   141584 ------------------------------atc---------------------------GGTTTAGGATGAAcgca--tt--tttgtttcgataaataatagatgaaaaaag--------agggttTGAGAGCGATGGGAAATGACA--GCCATT----CTCGAGTAATGGTTCagcaattttctttcag----aagagGACAAGAC----GAATGAATGGGAAC-TTTTGACGG---------------------AGCaagatc---ttttttttgctctgAAATGGGGTCAG------------CCTATGATTACGTAA--AAAGAATAGGAAAAC-----------------AAAGGAAATACGTCAGAAGTGG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3369639 246 +  4147112 ------------------------------ATC---------------------------GCTTTGGGATGAacgcatttt--tttgtttcgataaataatagatgaaaaaga--------a--gtttgaaagCGATGGGAAACGACA--GCCATT----CACGAGTAATGGTTCagcaattttctttcag-agaaaaaggacAAGAC----GGATGAATGGGAAC-TTTTGACGG---------------------AGCACGATC----TTTTTCTGCTCTGAAACGGGGTCAGCCTACGCAGTGACCTATGCATGGgaaa--aaatgacaggaa------------------------gaagtgcaaaaacaaaag
i caePb3.Scfld02_0      I 213 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=1286.000000
s ce10.chrX              5126102 15 + 17718866 TAGAGTTAAGATATA
s caeRem4.Crem_Contig0   1959490 15 -  4500979 aagaattgaaggaaa
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold567     84473 15 -   141584 AAATGATGTGAAAGG
i caeSp111.Scaffold567  C 0 I 239
s caePb3.Scfld02_0       3369885 15 +  4147112 aaaaaatgagaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I

a score=-1313.000000
s ce10.chrX              5126117 25 + 17718866 --TTTTTTAGTTTTGAAAGGGATCTAA
s caeRem4.Crem_Contig0   1959505 25 -  4500979 --aatgaaaattctgaaaaaaatcgaa
i caeRem4.Crem_Contig0  C 0 I 31
s caePb3.Scfld02_0       3369900 19 +  4147112 agaacggaaatacgtcaaa--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I

a score=-2209.000000
s ce10.chrX              5126142 393 + 17718866 CA--ATTAATTTAAATTGA---------ATGTGGAAT-----TTTTCAAGATTTACAGCGC----CATGTAACTTGTGGGTTTTCGTCCCACACACTGTTCATCCTATTATTGAATTTCAATTTTGCGGCAATTCTTTTTTAATTCGGAACCGTTCGATA-TAAGTTTTGGTTTAAAATGTCCACGAT-AGTTTGAAGTTCAGAAATATCACATAATTGCAAAAATTG-----AGAAACAATGAAACATGC-------------aattataaaaaatatgaattttaaatttCGGCTAACTTCCCCGGCGCGCCCACTTTTGAACTAATGAGGGCTTTTTCATTTTAGGTGAAACTGAAACAGGGAATAAATCAATACTGAAAAATCTCGTT-TGAAAACAATTTAGAATTTTTATTCTTTTTCGATTTTTGAA
s caePb3.Scfld02_0       3369919 354 +  4147112 aaGGATAAACCTGAAGGGATAAGTGAGAATCTAGAATAATCCTTACCTGGAACTCCAGCGCTTTCCATGAGTAATGAGGG--------------AATATTCAAccgagtttt----tttgaatgtatgagaatgttttcttg-ttgaaaGCCGTTCAAAAGTGCATTCGAACTTA---TGAACGAGATCAATTT----TGCAAAGATATTGtacttttggaaaatttgttctcagaactagaaaaacttgttttttggaaattaaaatagaaaaagtacAA----CAAATTTC--TTGATCTC--------------------AATAATGAAG----TTTGGTTCCGCgcacaa--------------aaaacaat--tgaatagtATAGTTCTGAGAAGGGACAGAAAGTGTTAT--------GACTTTAGGA
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530  31 -  4500979 I

a score=0.000000
s ce10.chrX              5126535 36 + 17718866 ATTTTTCCTTTTGTGATATTTATAAATTTTGTTGAA
e caePb3.Scfld02_0       3370273 37 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530 31 -  4500979 I

a score=583.000000
s ce10.chrX              5126571 57 + 17718866 AATTTTTCAAAGATAGTTTGAATAAAAATTCTGCCAAGTTAAAGAAATG-----TCAAGAAA
s caePb3.Scfld02_0       3370310 59 +  4147112 aattttttgaa---agttgtaaCGGTAGTGTATCTAAGTGAGGGAAGTTCATACTCAAATAA
i caePb3.Scfld02_0      I 37 I 54
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530 31 -  4500979 I

a score=0.000000
s ce10.chrX              5126628 42 + 17718866 ACTAGAATGAGAAAAAATTGATACTAGGCTCCGTCTCTATCT
e caePb3.Scfld02_0       3370369 54 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530 31 -  4500979 I

a score=826.000000
s ce10.chrX              5126670 140 + 17718866 GGGCTACTTTTATGTTTTTCA---ATAATTTTTTTCCTGTCTTTTCAATTTATTTTG----CAC-GTTTCCAGTACATCCATACCAGGCAATTTCGTATGTGCCAAGATTTAAAATTTTCGATAAAGGGCATTTCCGGGAGTTCGACT
s caePb3.Scfld02_0       3370423 142 +  4147112 GTGCAACTGTTTCGTTTTGCAGTCATAATTTGATGAACGTTGTATTAAAGCAGTTTGACAACATAGTTTTAATCACGCCTAAACctgg-agttttg-atttttctagaactggaacttc----aaaaagtgcttcaaaaagttgaacc
i caePb3.Scfld02_0      I 54 I 110
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530  31 -  4500979 I

a score=0.000000
s ce10.chrX              5126810 76 + 17718866 CTTTGGAAACTCGGCAAAACATTTTTATGCGTATTACTATGAATTTTTCAACAAGTGTAAAATACAAAAAAATCAT
e caePb3.Scfld02_0       3370565 110 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I
e caeRem4.Crem_Contig0   1959530 31 -  4500979 I

a score=282.000000
s ce10.chrX              5126886 3 + 17718866 GAA
s caeRem4.Crem_Contig0   1959561 3 -  4500979 gaa
i caeRem4.Crem_Contig0  I 31 C 0
e caePb3.Scfld02_0       3370565 110 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I

a score=2063.000000
s ce10.chrX              5126889 47 + 17718866 AATATTGGTCCTTTTCATTTTATGTCTAT--GCTCTTGAATGCTCATAA
s caeRem4.Crem_Contig0   1959564 45 -  4500979 -aaactcgtT---ATCCTTCAATTCATAAATACTCTTGAATGTATACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3370675 48 +  4147112 AATACTGATTTTGAGCTTTCTATATGTATA-ACTTTTGAATATACAAAA
i caePb3.Scfld02_0      I 110 I 36
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I

a score=-628.000000
s ce10.chrX              5126936 10 + 17718866 CTTTTCTAGA
s caeRem4.Crem_Contig0   1959609  6 -  4500979 AACC----GA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3370723 36 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10455204 1738 + 21540570 I
e caeSp111.Scaffold567     84488 239 -   141584 I

a score=-55.000000
s ce10.chrX              5126946 21 + 17718866 ATGTATTTGAGAATG----------GAGGGT
s cb4.chrX              10456942 21 + 21540570 ATGTGtgggagaaaa----------gaagaa
i cb4.chrX              I 1738 C 0
s caeRem4.Crem_Contig0   1959615 27 -  4500979 ATGTGTCTTAGAAAGTTGTGCTCGTGA----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3370723 36 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeSp111.Scaffold567     84488 239 -   141584 I

a score=-3035.000000
s ce10.chrX              5126967  9 + 17718866 -----TGTAAAA--AC
s cb4.chrX              10456963 12 + 21540570 aaaaaaatggaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1959642  3 -  4500979 ---------GAA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     84727  9 -   141584 -----TATAAAAGC--
i caeSp111.Scaffold567  I 239 I 14
e caePb3.Scfld02_0       3370723 36 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=48401.000000
s ce10.chrX              5126976 142 + 17718866 GAAAGCGT--CGAGTCGTTTTCTCTGAAAATCAGAGTAAACAAGTAGTGATGGCTT-TTATTC-------------------AAAAAAG--------------CACACACTTCTT-----GTTCTCTCCTT---T----CTCAAGGAAGTCAACTCCCCACCTCTTTTTT---CTTATTTTTCTTGTTTTTCT
s cb4.chrX              10456975 160 + 21540570 gaaagcGTCCCGag------actctgaaaatcagaGTAAACAAGTAG---TGGGCTtgtattc---------agaagaagaatacGAAGTCTTCTACACACAACATACActcttcagtttttttgcctctt-ttt----ttcaaggaaGTCAACTCGCCACCTATTTTCT-cgcttgttttttt---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1959645 151 -  4500979 GAAAGCGT--CGGg------actctgaaaatcagagtAAACAAGTA-----------GTAttcaagagaagaagaagaagaagaagaagtctt---------------ACTCtcc-----tttctcctttt-tttcttattcaaggAAGTCAACTCGCCACCTATTTACT--GCttgtttttcgttttattcT
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold567     84750 150 -   141584 GAAAGCGT--Tttg------cttctgaaaatcagagTAAACAACTAG---TGGCTT-GTATTC-----------------TAAAAGAAGTCTTTTACAT---GCACacactctct-----tttcttttcttattt----ttcaaggaaGTCAACTCGCCACCTATTTTCTGtgcttgttttt--ttttcattt
i caeSp111.Scaffold567  I 14 C 0
s caePb3.Scfld02_0       3370759 147 +  4147112 GAATGCGT--GGTG------CCTCTGAAAATCAGGGTAAACAAGTAG---TGGCTT-GTATTC-----------------TTGAAGAAGTCTTCTA-------CACACtcgtttt-----cttcctttttt-ctt----ttcaaggaagtcaactcgccacctattttctgtgcttgttttttattttctttt
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=11360.000000
s ce10.chrX              5127118 61 + 17718866 GACTAGCGAGC---AAAAAAAAAACGATTTAGTATTTAGCCTGACTGCAAAAAATTTATTTTCC
s cb4.chrX              10457135 53 + 21540570 ctcttgcgTAG---AGCAAAAAATCGTTTTAGTATTTA--------GCGCGAAATTGCATAGGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     84900 64 -   141584 gactgACGagctgaacaaaaaaaacgctTTAGTATTTAGTCTTCTTGCACAGAATTGCTCGTCT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3370906 61 +  4147112 cactgaCGAGC---ACAAGAAAAAAGCTTTAGTATTTAGTCTTCTTGCACGAAATTGCATGGGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeRem4.Crem_Contig0   1959796 38 -  4500979 I

a score=4583.000000
s ce10.chrX              5127179 24 + 17718866 ATGACCTCG--AG-TGTCAAGACGACG
s cb4.chrX              10457188 24 + 21540570 ATGACCTCA--AG-TGTcaagaaaata
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   1959834 26 -  4500979 ATGATTTCAGCAG-TGTGAATTTGacg
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold567     84964 25 -   141584 TTGACTTCT--AGAAGACAAATCTTTG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3370967 24 +  4147112 ATGACCTCA--AG-TGACAGGACGGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=768.000000
s ce10.chrX              5127203 3 + 17718866 GAA
s caeRem4.Crem_Contig0   1959860 3 -  4500979 aaa
i caeRem4.Crem_Contig0  C 0 I 160
s caeSp111.Scaffold567     84989 3 -   141584 CAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3370991 3 +  4147112 AAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457212 25 + 21540570 I

a score=-1965.000000
s ce10.chrX              5127206 19 + 17718866 AGCTAGACGCAAACGCTTA
s caeSp111.Scaffold567     84992 14 -   141584 AAGCTGTTGGGATT-----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3370994 15 +  4147112 TAGctgtgaaaaacg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457212 25 + 21540570 I
e caeRem4.Crem_Contig0   1959863 160 -  4500979 I

a score=-12349.000000
s ce10.chrX              5127225 172 + 17718866 TGTGTGAGCAAAAGAGCCACGGGGGCCTCTCAAGATTTAT-----GTTCCCATTTC-------AGAATACATAATGGATTTT-------TAGTGAGATTTTTCTGTTGAGTAAAATTGTTCGAT------------------TTTTAGATCTAAGAGTTTGATAGGAAAAAGCACCGCATTTCTTTTAGCGAACAATACATTCGCTTAC
s cb4.chrX              10457237 168 + 21540570 TCTgcgaggagaaaaaaaacgtatcCTGGCTAAGATTGAT-----GTTCCCGTCTGCGAAAATGGAATGGATAATGgatttt---------gtgcatttttttc------tcatttcattcaatctccgtttttttttgttgctcaAGATT-TATAGCAAGATAG----CCGCTCA----------CATTCGTACTCATCCTC------
i cb4.chrX              I 25 I 2
s caeSp111.Scaffold567     85006 103 -   141584 ------------------------------TCAGATTTATATTCCATTCCTatcttca--------------aatgaatttccgGTTCGCAGTACAATATT--------------------------------------------AAGATC-AAACATGTGATAG----ATGCACATTG-------GATGGACGAATGAGCTC------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3371009 131 +  4147112 --------------aaaaacgc------gACGAGATTTAT-----GTTCCCATTTTGAGA---TGGATGGTTAATGGATTTCTGGATTCTAGTACGATTTTT----------------------------------------CTCGAGATTAAAACGTTCGATGT----GTGCTCAGTGTTGTTCTTCTTGACACGGGATTTC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeRem4.Crem_Contig0   1959863 160 -  4500979 I

a score=22288.000000
s ce10.chrX              5127397 59 + 17718866 ---AAATAAGA-AAAAAAAGCTGCGAAGCGGA-----AAAATGCACTGAGCAGAAGTAAAATGAT--CAA
s cb4.chrX              10457407 63 + 21540570 ATGTAATAAA--ACC-----CTCTGAAGCGGAATAGGAAAAAGCACGAAGCAGAAACAAATTGATCACAG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   1960023 62 -  4500979 aaataataag--aaaatgagCTTTGAAGCGGaa----aaaaaGCACGAAGCAGAAACGAATTGAT--CAA
i caeRem4.Crem_Contig0  I 160 C 0
s caeSp111.Scaffold567     85109 58 -   141584 ---TAATAGC--GAAAAGAGCTACGAAGCGGA-----AGAATGCATCAGGCAGAAACAAATTAAT--CAA
i caeSp111.Scaffold567  C 0 I 48
s caePb3.Scfld02_0       3371140 61 +  4147112 ---TAATAACATAAAACAAGCTGTGAAGCGGA-----AGAATGCACCAAGCAGAAATAAATTGAT-ACGA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=1566.000000
s ce10.chrX              5127456 8 + 17718866 AGATACAA
s cb4.chrX              10457470 7 + 21540570 GGCTATa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1960085 8 -  4500979 GGATACAA
i caeRem4.Crem_Contig0  C 0 I 64
s caePb3.Scfld02_0       3371202 8 +  4147112 GGATACAA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeSp111.Scaffold567     85167 48 -   141584 I

a score=-196.000000
s ce10.chrX              5127464 10 + 17718866 CTACGGAAAA
s cb4.chrX              10457477 10 + 21540570 ctacagaaaa
i cb4.chrX              C 0 I 82
s caePb3.Scfld02_0       3371210  2 +  4147112 ---CG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e caeSp111.Scaffold567     85167 48 -   141584 I
e caeRem4.Crem_Contig0   1960093 64 -  4500979 I

a score=1031.000000
s ce10.chrX              5127474 34 + 17718866 TACAATGTTTTGTTAAATTTGGGACAGGGATCTT
s caePb3.Scfld02_0       3371212 29 +  4147112 ---AATGTTCTATTCTATCTTAG--AGGGATCTT
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457487 82 + 21540570 I
e caeSp111.Scaffold567     85167 48 -   141584 I
e caeRem4.Crem_Contig0   1960093 64 -  4500979 I

a score=0.000000
s ce10.chrX              5127508 533 + 17718866  
e caePb3.Scfld02_0       3371241  30 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457487  82 + 21540570 I
e caeSp111.Scaffold567     85167  48 -   141584 I
e caeRem4.Crem_Contig0   1960093  64 -  4500979 I

a score=333.000000
s ce10.chrX              5128041 5 + 17718866 TATTT
s caeRem4.Crem_Contig0   1960157 5 -  4500979 TATTC
i caeRem4.Crem_Contig0  I 64 C 0
e caePb3.Scfld02_0       3371241 30 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457487 82 + 21540570 I
e caeSp111.Scaffold567     85167 48 -   141584 I

a score=-771.000000
s ce10.chrX              5128046 3 + 17718866 TTT-
s caeRem4.Crem_Contig0   1960162 3 -  4500979 -CCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85215 3 -   141584 TTT-
i caeSp111.Scaffold567  I 48 I 2
e caePb3.Scfld02_0       3371241 30 +  4147112 I
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457487 82 + 21540570 I

a score=598.000000
s ce10.chrX              5128049 3 + 17718866 CTC
s caeRem4.Crem_Contig0   1960165 3 -  4500979 Cca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85220 3 -   141584 CCA
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3371271 3 +  4147112 cta
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I
e cb4.chrX              10457487 82 + 21540570 I

a score=23863.000000
s ce10.chrX              5128052 132 + 17718866 AGAGAAAAAAAAACGG-----AAATGATTGTTGATGTTCTTTCC---CCCAACCATTAGGG--TCTGCATACCCTGAT-GGGCGGCCGAGGAA-TAGCGTAAAATGCAAAGTGACGAAGGAAAAGAGAA------------GACGACGAAGA-AGAA
s cb4.chrX              10457569 126 + 21540570 aaaggaaaaaaaacaacccgCGGATGATCGTTGA---TTTCCCA---ACGAACCCTAATGG--TTTGTATACCCTAAT-GG-------------AAGTGAGG--------AAAAGGCAAAGGAGGGGGTGAAataggaagagaagaagaaga-agaa
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   1960168 130 -  4500979 agccaaaaaaaaacaa------aatgatcgTTGA---TTTCTCA---ACAAACCCTAATGG--TTCGCATACCCTAAT-GGGCGACCAATggaaaagtgtggaatagcgaaaaatgcaaagaagggagag-----------gaaaaaggaga-agaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85223 122 -   141584 GG--aaaaaaaCACTG-------------GTTGG---TCTTTCATTTCTTAGCCCTAATGG--TTTGCATAAACTAAT-GGGCGGCaaaaaga-tggtgtggaatagcgaaaaaggcgaagaaggaaga------------aaagacgggga-aaaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3371274 118 +  4147112 agaaaaaaaaacacag-----------------------tttca---cAAACCTCTGATGGTTTTTGTATACCCTAATAGGGAAGCCAAAAGA-TGGTGTAGAATAGCGAAAAAGGCAAAAGAAGAGGA------------ATTGGAGGGGAGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   518851 6808 +   591668 I

a score=83410.000000
s ce10.chrX              5128184 64 + 17718866 GAAGACATATTAGCTGAATCAACGCAATTTCTCGGCAGCTGTAAATGTGTCATTTGCATTTGGA
s cb4.chrX              10457695 64 + 21540570 gaagacatatTAGCTGAATCAACGCAATTTCTCGGCAGCTGTAAATGTGTCATTTGCATTTGGA
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   1960298 64 -  4500979 gaagacatatTAGCTGAATCAACGCAATTTCTCGGCAGCTGTAAATGTGTCATTTGCATTTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85345 64 -   141584 gaagacataTTAGCTGAATCAACGCAATTTCTCGGCAGCTGTAAATGTGTCATTTgcaattgga
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3371392 64 +  4147112 GGAGACATATTAGCTGAATCAACGCAATTTCTCGGCAGCTGTAAATGTGTCATTTGCATTTGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   525659 62 +   591668 GAAGACATATTAGCTGAATCAACGCAATTTCTCCGCAGCTGTGAATGTGTCATTTGCATTTG--
i caeJap4.Scaffold17934 I 6808 C 0

a score=-2677.000000
s ce10.chrX              5128248 24 + 17718866 TTATACGAGGTTGTGTGTCGCATC
s caeRem4.Crem_Contig0   1960362 13 -  4500979 ---------GG--CGGAAGGAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85409 21 -   141584 aaat-gaaggt--TGTGTCGCATC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3371456 22 +  4147112 GAATAGAAGGT--TGCATCGCATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   525721 10 +   591668 ---TAGAGGGT--AG---------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10457759 25 + 21540570 I

a score=34110.000000
s ce10.chrX              5128272 182 + 17718866 AGTGGAT--AGAAT----------------AGACGGATGAGTTGATGGAGGATGAA---------------------GAAGCTATAACC---GAAA------TGGCTTCTGAATC--AC--------AAACTACTCCGTTAAA--------------------------GAAAAAGTAATAAACGTCAGGAG-----------GGTGAAGCAAAGTGTGACCCCTTCTT--TGCGAGGATTTGAAGTATAAAACT--AAAAAGATTGATGGGTTTTATAAT------------
s cb4.chrX              10457784 211 + 21540570 AGGGGATAGAGAAT----------------ATACGGATGAGTAGAG-GGAAATGGAGGAATAAATCGTCTAGTGTCTGTGGCTAGAACCA--AAAA------TGGTTG-------------------TAACAATTtaaaagggacc-----------------aataaataggaaaaaggaaaataatggaaat---------gaaaaagtaaagTGTGACCTCTTTTTTCCTGAAGGTTTTAGAGTATTCGACGAGAGAAAGATTGATGGTTTTTATAAT------------
i cb4.chrX              I 25 I 956
s caeRem4.Crem_Contig0   1960375 193 -  4500979 GGTGGAT--AAAAT----------------AAACGGATGAGTAGTGTGGAAATGGA---------TGTCAAG----TGTGGCTTTAACCACCGAAG------TTGTTTCTGATTC--AC----TAACTAACTATTCGACTGGG--------------------------TTGGAagaaataaaagga-----------------aaaaagtatagtGTGACCTCTTTTT--CTGGACGTTTTAGAGTATTCGACCAAAAAGAGATTGattgtttttattat------------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold567     85430 230 -   141584 AATggat--agaat--------------aaaaaaagatgagTAGAATAGAGGGAGA---------TGTCAAGTGCGGTTGACTATAACC---GAAA------TTGTTTATGATTC--ATCCGACAAAAGTCCATTCtgatggaaaa--------atgagtgaaaatacagagaaaaaaataaacgaagaggaaaaggga----ggaaaagtaaagTGTGACC-CTTTTT--CGGAAGGTTTTAAAGTATgcatccaaaaaaagattgatgGTCTTTATTAT------------
i caeSp111.Scaffold567  C 0 I 4
s caePb3.Scfld02_0       3371478 217 +  4147112 AATGGAT--AGAAT---------------AGAAAGGATGAGTAGGATAGAAATAGA---------TGTCAAGTGTAGCTGAATATAACc---gacaaaaaatttgtttatgaTTC--AT--------AGTTCATccaggaagaaaa----------------------tgagaaaaaaataaatgaagaggagaagggAGAATGGAAAAGTAAAGTGTGACC-CTTTTT--CGGGAGGTTTTAAAGTATgcaaccaaaaaaagattgatggGTTTTATTAT------------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   525731 233 +   591668 AGTGAGC--GGAATGGACGATGATGAGTGGAAGCGGATGAGTAAGA-GGGAATA-A---------TGTCAAG----TATCACCGAAACC---GAAA------TTACCTCTGAATCTGAG--------TCACCATACGACTGGCTACTGCGCCACACTGGTTGAAAagtggaagaaaaaggaaaaaaaaacaaaagagaaTCAAAGCAAAGTGGTCCGTGGCCCTTTTTT--CC------------------------AGAAAGATTGATGATTTTCTCTAAAAGCTTgagaat
i caeJap4.Scaffold17934 C 0 C 0

a score=2332.000000
s ce10.chrX              5128454 5 + 17718866 GTGAA
s caeRem4.Crem_Contig0   1960574 3 -  4500979 --GAA
i caeRem4.Crem_Contig0  I 6 I 25
s caeSp111.Scaffold567     85664 5 -   141584 GGGAA
i caeSp111.Scaffold567  I 4 I 87
s caePb3.Scfld02_0       3371696 5 +  4147112 GTGAA
i caePb3.Scfld02_0      I 1 I 720
s caeJap4.Scaffold17934   525964 5 +   591668 gcaaa
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10457995 956 + 21540570 I

a score=-470.000000
s ce10.chrX              5128459 17 + 17718866 -AAATGGTCAAAACGACT
s caeRem4.Crem_Contig0   1960602 17 -  4500979 -ATACTCATGAAGAGATT
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold567     85756 17 -   141584 -TAACTTTTAGTGTGATT
i caeSp111.Scaffold567  I 87 C 0
s caeJap4.Scaffold17934   525969 13 +   591668 aaaa-----aaaacggct
i caeJap4.Scaffold17934 C 0 I 543
e caePb3.Scfld02_0       3371701 720 +  4147112 I
e cb4.chrX              10457995 956 + 21540570 I

a score=-8076.000000
s ce10.chrX              5128476  40 + 17718866 TTTATTTTCAAA---------ATTCAGTAT---------------GAGGGACAAAAATCCG--------------------------------AAT-------------------------------
s caeRem4.Crem_Contig0   1960619 119 -  4500979 TTAGAATACGAATTATCAGCTGTCTGCAATCtttaattgtttttcgaagaaaaaaaattgtatggTTTGTGCTAGATTTCATTTGGTTTATTCAAGTACACCTAAATCTATTAATGGAC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85773  92 -   141584 GAAGCtcagaaattatgaattattcaaaat---------------gaaataaaaatagctt-tGCCAGGTGCTTGA-----------------AAGGAAGCC--AAGTCATGAATAAAACTCCACAT
i caeSp111.Scaffold567  C 0 I 21
e caePb3.Scfld02_0       3371701 720 +  4147112 I
e caeJap4.Scaffold17934   525982 543 +   591668 I
e cb4.chrX              10457995 956 + 21540570 I

a score=-5453.000000
s ce10.chrX              5128516 25 + 17718866 --------------------TTTCAATTT--------CCGA-----------CTCAAAATA-------------ATA
s caeRem4.Crem_Contig0   1960738 74 -  4500979 TttcaaaatcaagttttccatTATAATTTAATCTACACCTGTTTTTAGGCATTCTAAATTGTAGTATTGCAATA---
i caeRem4.Crem_Contig0  C 0 I 53
s caeSp111.Scaffold567     85886 18 -   141584 --------------------TTCCAATTT--------CCTg---------------agatg----------------
i caeSp111.Scaffold567  I 21 C 0
s caePb3.Scfld02_0       3372421 22 +  4147112 --------------------TTTCAATTT--------CCTG-----------TAAAAGAGG----------------
i caePb3.Scfld02_0      I 720 C 0
e caeJap4.Scaffold17934   525982 543 +   591668 I
e cb4.chrX              10457995 956 + 21540570 I

a score=13508.000000
s ce10.chrX              5128541 46 + 17718866 -----------CAAATAAAATG--------TATTAGGT---TC-----ACACACACATA------CATACTAGACTAGT
s cb4.chrX              10458951 68 + 21540570 -----------CAATTGAGATGTATACATTTATTGGGTCGGTTCACACTCACTTACACATCCACTCACACTAGACTAGT
i cb4.chrX              I 956 C 0
s caeRem4.Crem_Contig0   1960865 55 -  4500979 -----------caATAGAGATGTATACACTTATTGGGTTGGTT-----TCACATACA--------CACACTAGACTAGT
i caeRem4.Crem_Contig0  I 53 C 0
s caeSp111.Scaffold567     85904 65 -   141584 aaaataaaatgtaaTAGAAATGTATACATTTATTGCGT---TT-----TCACTCACACA------CATACTAGATTGGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3372443 48 +  4147112 CAAATAAAATGTAATAGAAACGTATACATTTATTGGGT---TT-----TCAC-----------------------TAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   525982 543 +   591668 I

a score=131538.000000
s ce10.chrX              5128587 309 + 17718866 C-ATAGGAAATTAGTTTTTCTT-----TGGTAGT-------AGTTGAGCTGATAATCTGC-CGCGCCGGATT-------TGGTGAATAGAAG-----------AGCACCGGACCAGAAATAGCGGAC-GGGGTTCTAAAAACCAGTTTCACTCCCAAAAAAAAAAATAGA-----------------CCA-ACATATACATAGG-GA-----GCAACAGTAGAAAAA-AGAACAAGAAGATGGATTGGGAGGGAGAACTTTTTGGAG-ACACACAATAGATACTTGTGTG-----TTTCCGAAAAGAAAACATGG--------------------------------GAAGGAAAAGGGCCA---------------CC----------AAAATGAG-------AAAAAGTTTCG--CCAATTTTCTT---------ATCGGCGGGTG
s cb4.chrX              10459019 345 + 21540570 CTTTCGGAAATTAGTTTTTCGTTTCTGTGGTAGTAGTAGAGGGTTGAGCTGATAATCTGC---CGTTAGATTCGGTCTTCAATGAATAGAGG--------------GTCGGACCG-------------AGGGTTCAAAtggaaa---------ccgaaaaaaaaaatggggaagtGGCCCCTCGCCGAAA-ATAAATACATACATTGGAGTTGTACTGAAGAATAGATAGAACAAGAAGATGGATT-----GGAGAAC--TTTGGAG---ACACAATAGATACTTGTGTG-----TTTCCgaaaagaaaacatgt---------------------------agaaggaagaaaaaggaaggaagaggaggacccttct----------aaaatgag-------aaaaagttt----ccaattttcttgtcgtcgtcgtcggcgaccg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1960920 291 -  4500979 C-Acaggaaattagtttttcgt-----tGGTAGT-------GGTTTAGCTGATAATCTGC---TAGCGGATT---TCTCTGTTGAATGGATG-------------CAGTGGACCAGAAATGGTGGAC-GGGGTTCGAAATAAAG---------CCAAAAAATA------------------------GAA-GCAAATGCATACA-TAAACTTGtactgaagagaaga-agaacaagaagatgGATT-----GGAGAAC-TTTTGGAG---ACACAATAGATACTTGTGTG-----tttccgaaaagaaaacatgg---------------------------agaa-gaagaaaaaggggg----------------cc----------aaaatgag-------aaaaagttt----ccaattttctt---------gtCGGCGGGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     85969 315 -   141584 C-GTaggaaattagtttttcggTTGG-TGGTGG--------GGCTGAGCTGATAATCTGC---ATTTGGATTCAACG--CATTCACAGTGAG-------------CAGTGGACCAAAAATGGAGGACGGCGGTTCAAAGcaaag---------tcagaaaaaaacatagag----------------ACATGCACATACATACA-TAAACTTGTACTggcgaaaaga-agaacaagaagatgGATT-----GAAGAAC-TTTTGGAG---ACACAATAGATACTTGTGTG-----Tttccgaaaagaaaacatgg---------------------------atagaaaaagaagagggac----------------CCACCACCCccgaaaatgag--------aaaagttt----CTATTCTTCTT---------GTCGGCGGGTG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3372491 308 +  4147112 C-GTAGGAAATTAGTTTTTCGGTT---TGGTAGT-------GGTTGAGCTGATAATCTGCAAGAAGCGGATTTGCCGCCCATTCAATGGGAG-------------CAATGGACCAGAATTGGTGGACGGgggttcaaaatgaaa---------ccagaaaaaaac-tagcg----------------AAA-GCATGCACATACA-TAGAATTGTACtggcaaaaaga-agaacaagaagatggATT-----GGAGAAC-TTTTGGAG---ACATAATGGATACTTGTGTG-----Tttccgaaaagaaaacatgg---------------------------agAGTAAAAGAAGGGGGAc----------------cc----------aaaatgag-------aaaaagttt----ccaattttctt---------gtcGGCGAatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   526525 335 +   591668 C-ACAGGAAATTACTTTTCC-------CCGCATT-------G--TGAGCTAATAATCTGG-----GGGGTTTTGGAATTCTAAGAACGGAGAGAAAGGCTAAAAGCAGTGAACCAGAAACTGCTGCTCTGACTTCTTTCCAAAA---------CCAGCAACAAGA----------------------AAA-AGATGTGAACACG--AGCCTTGTACT-----------AG---AAGAAGATGGATT-----G--GAAC-TTTTGAGGCAAACACAATAGATACTTGTGCGCTTCCTTCCCaaaaggaaaacatggaaatggaaatggaaagaaagactagtaaaagaagaagaagaggaag----------------aa----------aaaagaaggaaaacgaaaaagtttcggcccaattttctt---------gccggcgggcg
i caeJap4.Scaffold17934 I 543 I 123

a score=6851.000000
s ce10.chrX              5128896 60 + 17718866 CTTTTGAAGTT----GAC--GCAGACT--CG------AAATAGATGAAAAGCCCAAAATTG------------------------------AAGGGAACAAGTA
s cb4.chrX              10459364 59 + 21540570 cttttgaagtttttcggGTAGGCGAGTTGTG--CCGAAAATAGGAGTG-------------------------------------------ATGAGCACAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1961211 74 -  4500979 CTTTTGAAGTT----GACTAGAAGAAT--TG--CCAAAAATAGAAGAGCAGCACAAAATGTGGAGCAAT----------------------GTGAGAGAAAGAG
i caeRem4.Crem_Contig0  C 0 I 116
s caeSp111.Scaffold567     86284 98 -   141584 CTTTTGAAGTT----GAGTAGAAAAAT--TTGCCCGAAAATAGACGAAAAGAGCAGCATGCGGAGAAATAGGGAACAAAATGGAGttgaatgagagaaagatgA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3372799 49 +  4147112 cttttgaagtt----ggatAGAATAGT--TG--ccgaaaataga-----------------------------------------------gaaagaagaagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   526860 123 +   591668 I

a score=-1274.000000
s ce10.chrX              5128956 18 + 17718866 CATTTGAA--GAGC----------AACATG--
s cb4.chrX              10459423 22 + 21540570 TGTTaaaaaggaga----------agaacaag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     86382 26 -   141584 ----CAAAAGAAGCGGGTAGATAGAAAATG--
i caeSp111.Scaffold567  C 0 I 7
s caePb3.Scfld02_0       3372848 16 +  4147112 ----gaaaaagagc----------aaaatg--
i caePb3.Scfld02_0      C 0 I 983
e caeJap4.Scaffold17934   526860 123 +   591668 I
e caeRem4.Crem_Contig0   1961285 116 -  4500979 I

a score=-127.000000
s ce10.chrX              5128974 6 + 17718866 --AAATTA-
s cb4.chrX              10459445 6 + 21540570 --aaaata-
i cb4.chrX              C 0 I 895
s caeSp111.Scaffold567     86415 9 -   141584 AAAAACTGA
i caeSp111.Scaffold567  I 7 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e caeJap4.Scaffold17934   526860 123 +   591668 I
e caeRem4.Crem_Contig0   1961285 116 -  4500979 I

a score=-544.000000
s ce10.chrX              5128980 112 + 17718866 TTAGGCTTTCTGTTTC-------------ATTTTGGGTATTCATACTTACTAAAAACCTACATTATGCAGTTTACTGGGAGACATAACGTTTTTGTATTTATTTATTTTTATTTGTATGATAGAG
s caeSp111.Scaffold567     86424  99 -   141584 GTGAGctttgaatttctaaaatggagaaaaaacggaGCAGCAAGACTCATGCATAACATAAACTAAGCATTTTGTCTGG-------------TTGTATTTGAGT-------------TGAAAAGG
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e caeJap4.Scaffold17934   526860 123 +   591668 I
e cb4.chrX              10459451 895 + 21540570 I
e caeRem4.Crem_Contig0   1961285 116 -  4500979 I

a score=-5181.000000
s ce10.chrX              5129092 261 + 17718866 CACCAACTTAAAAACAG--GGTTCTCAGTTGGATTCTTGTTTTGCATAATAGTGCAAAATGGACCGAATTATTGAATTTTGAAAACTTCAGGCAAATT---------TTTGGTGATCTGCCAATCTTTTTAATTGGTCAGAAACAAATGAAATTTGTGTAA-ATTGTTTTTTGCCGACTCCCAGAAAA----------TAATTTTCTAAATAGAAATATGTAAAAATGAAAA----------AATAACTGACAGAGTCTTCCATGGAGACTATGGCAA-GGATGTCTTG--------------------CTCAA----------------
s caeRem4.Crem_Contig0   1961401 215 -  4500979 caaaagttaaaaaacaT-----ACACATCTGA------------------AGTTCAGAATTGATTG-TTATTCgagttctcaaaaat--------------------tttgagcag----cAA---GTTcgaccgaaaaaaaagaaacaaaaaaagagtga------------------------aaaacaaaattgttcatttttc--ataataataaaTCAAACTAAAGC-TTTTCGTCTAAATGGCGGTAAAGT-TCCTATGGAGACTATGACGACGGGTGTTTTT--------------------GTAAA----------------
i caeRem4.Crem_Contig0  I 116 I 120
s caeSp111.Scaffold567     86523 290 -   141584 ----AACTAAAATGAGTTTGGAACACAGTT---------------------CTTCACAtttagtta-ttttttttatcctTAAAACTATACATAATTCCgtgattcatttgatt------caa---tgtttatcaaaaataaaaactaaaaactgaaatgatTCTTTTCGCTAAAGAAACCAAGCAAAACAGACACATTAATTTT----ATGAAAGTCAATCAAAATGAAGCATTTGCTTTGAAATGTGAAAGAAGT-TCCTATGGAGACTATGACGACGGTTGTTTTTCAAGTGGTGAAAGCTTCAAAGCAAAATAGTGCCTCCCACAG
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e caeJap4.Scaffold17934   526860 123 +   591668 I
e cb4.chrX              10459451 895 + 21540570 I

a score=-883.000000
s ce10.chrX              5129353 77 + 17718866 TTTGCT-TTTAG---CACTATTGCAAAGTAAAATT-------------TTCCTGATCCTTCTGCACCAACATCAAAAGACTCTACACCGGTTTT
s caeSp111.Scaffold567     86813 83 -   141584 CGTATTATTTAGTGACACTATAGGAACTGAAAAACAGCATGGGGAAAATTAGTAATTTTTC----CCAGCTTCTAAAATCTTGCCAC-------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e caeJap4.Scaffold17934   526860 123 +   591668 I
e cb4.chrX              10459451 895 + 21540570 I
e caeRem4.Crem_Contig0   1961616 120 -  4500979 I

a score=885.000000
s ce10.chrX              5129430 18 + 17718866 GTGGGACA--TGGAAAGTTT
s caeRem4.Crem_Contig0   1961736 17 -  4500979 GTTGGACT--T-CAAAGTTT
i caeRem4.Crem_Contig0  I 120 C 0
s caeSp111.Scaffold567     86896 17 -   141584 --GGGGCCAAT-GAAAGTTT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e caeJap4.Scaffold17934   526860 123 +   591668 I
e cb4.chrX              10459451 895 + 21540570 I

a score=-745.000000
s ce10.chrX              5129448 2 + 17718866 AA
s caeRem4.Crem_Contig0   1961753 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     86913 2 -   141584 TC
i caeSp111.Scaffold567  C 0 I 6
s caeJap4.Scaffold17934   526983 2 +   591668 AA
i caeJap4.Scaffold17934 I 123 C 0
e caePb3.Scfld02_0       3372864 983 +  4147112 I
e cb4.chrX              10459451 895 + 21540570 I

a score=103698.000000
s ce10.chrX              5129450 146 + 17718866 ATAGATGGAATTTGAATAATGGGT--CTAATGAATCTTCGGATG-CAGTGGGTTGTGAGACGATAAGTGG----CCGAGACG--------------------------GAAGAGTG--GTGACAATGCGCGAAATCAGATAAA------------TATTCCTCAATTCATCAGAGCGTGCACTAATGCAATTT
s cb4.chrX              10460346 167 + 21540570 ATTGATGGAATTTGAATAAAGAGCGTCTAATGAATT---------CAATGGGTTGTGTGGCGATAAGT-GCC--CCGAGGTGAGGAAGACGAAGACAACGATTGAGGAGGAGAAGG--GTGACAATGCGCGAAATCAGAtaaa------------ttttcctcaattcaTCAGAGCGTGCACTAATGTAATTC
i cb4.chrX              I 895 C 0
s caeRem4.Crem_Contig0   1961758 148 -  4500979 ACGGATGGAATTTGAATAATGGGC--CTAATGAATCTTTGGATG-CCGTGCGTTGTGTGGCGATAAGTGGAC--CCGAGACG--------------------------GGCGAGTG--ATGACAATGCGCGAAATCAGATAAA------------TATTCCTCAATTCATCAGAGCGTGCACTAATGTAATTT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     86921 146 -   141584 TAAGACGGAATTTGAATAATGGGT--CTAATGAATCTATAGACGCGTGTGGGCTGTGAGGCGATAAGTGG----AGAAGAC---------------------------GGGGGGTG--ATGAAAATGCGCGAAATCAGATAAA------------TATTCCTCAATTCATCAGAGCGTGCACTAATGCAATTC
i caeSp111.Scaffold567  I 6 C 0
s caePb3.Scfld02_0       3373847 146 +  4147112 ATTGATGGAATTTGAATAATGGGT--CCAATGAAT-------CGCCCGTGGGCTGTGAGGCGATAAGTGG----CCGAGACACTGCCG--------------------GGAGGGTG--ATGACAATGCGCGAAATCAGATAAA------------TATTCCTCAATTCATCAGAGCGTGCACTAATGTAATTC
i caePb3.Scfld02_0      I 983 C 0
s caeJap4.Scaffold17934   526985 164 +   591668 TTAAATGGAAT-----TAATGAAT--CT--TGAATCTATC-----TTGAGGGCTGTGAGGCGATAAGTGCCCTTCCGAAAGAAAGACCGGGTG---------------AGATGATGACATGACAATGCGTCGAATCAGATCTATGTATTCATTCTTATTTCTCAATTCATCAGAGCGTGCACTAACGCAATTT
i caeJap4.Scaffold17934 C 0 I 5021

a score=-6485.000000
s ce10.chrX              5129596 804 + 17718866  
s cb4.chrX              10460513 543 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1961906 565 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold567     87067 598 -   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3373993 687 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   527149 5021 +   591668 I

a score=-777.000000
s ce10.chrX              5130400 7 + 17718866 GACTAAA-
s cb4.chrX              10461056 7 + 21540570 -ACCAAAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     87665 4 -   141584 ---TAAA-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3374680 4 +  4147112 ---TGAA-
i caePb3.Scfld02_0      C 0 I 1395
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e caeRem4.Crem_Contig0   1962471 37 -  4500979 I

a score=600.000000
s ce10.chrX              5130407 2 + 17718866 CC
s cb4.chrX              10461063 2 + 21540570 CC
i cb4.chrX              C 0 I 415
s caeSp111.Scaffold567     87669 2 -   141584 CC
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e caeRem4.Crem_Contig0   1962471 37 -  4500979 I

a score=120.000000
s ce10.chrX              5130409 4 + 17718866 AGGA
s caeSp111.Scaffold567     87671 4 -   141584 AAAA
i caeSp111.Scaffold567  C 0 N 0
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461065 415 + 21540570 I
e caeRem4.Crem_Contig0   1962471 37 -  4500979 I

a score=0.000000
s ce10.chrX              5130413 7 + 17718866 TTTATAG
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461065 415 + 21540570 I
e caeRem4.Crem_Contig0   1962471 37 -  4500979 I

a score=463.000000
s ce10.chrX              5130420 68 + 17718866 GAATATAGTTT-----------AAGAGAGATACAACAA-------------TTTTACTTTTTTCCCCGCACTACCAGAAATATAATAATTAT
s caeRem4.Crem_Contig0   1962508 92 -  4500979 gaatatagttttttgaaacttaatGAGCGACCTAAAAATAAACAGGATTTTTCTGAGTATTATATATGTATGACTGAACAAGTAATTATTAT
i caeRem4.Crem_Contig0  I 37 I 45
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461065 415 + 21540570 I

a score=0.000000
s ce10.chrX              5130488 19 + 17718866 ACTTAATGGTTGCAAGGCA
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461065 415 + 21540570 I
e caeRem4.Crem_Contig0   1962600 45 -  4500979 I

a score=-1258.000000
s ce10.chrX              5130507 276 + 17718866 AAAGTTCACTCACGTGAAAGAGAAATTGGACATGAAAATGTACAAAGA--ATATTTTAATTCTGACTGAAATCACATGCCTCAAAAAGGAATTCTCAGATT--------CCC--AGAATTTAAAAATCAAACACTATGCAATTTTGAAAATTAGCAAAATAAGCCAAAAACCAGGCCGCATTGCAGGTTCTATTTTAGTTTTCTGATTCTGAATTCTAAAAAAAAAGTGAGTCACATAAAACTTGACCAGCACTCGGTATGAAGTCAGGGGGGCAAGGGAAAATCATT
s caeRem4.Crem_Contig0   1962645 220 -  4500979 AATGTTCTTTGaataggaagaaaaa------ataagaacggTCCAGGATGATACATTAGT----------------TGctggaaaaatagagtttAATGTTAATCGCCACCCGGAGAACcgaaaaaacaattgttttcttACTTAGAGAAAGTTCGAAATAA-CCAGACATT------CATTACATGT--GACTGCAATTCC-----------TTTTAAAATAAA----------CTAAGATTTTTCCA------------AAGATATgggaata--gaaaaaaca--
i caeRem4.Crem_Contig0  I 45 C 0
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461065 415 + 21540570 I

a score=12098.000000
s ce10.chrX              5130783 259 + 17718866 CTTC----CCAAAAAAGTAAAACAAATAATGATAAG-----------AAAAGGAAAATACATCTCAGATG----------CGTT------GCTCGCCTTCT---------TCATGTTTTTTCTCCAGCGCTTCTTGTAAAAATTGGAAGACAAGTTACTTTTCTCTCACTGCTTCACACTCACAAGCACACTAAATTGTTTGATGCCGTACTCACGTAGGCGAAAAACTGGATGAATAACAAAAACGAA--CTTCTAAATATATGTATATTGAGCTCCCC--------------CCACATGCATATTATAACGGA
s cb4.chrX              10461480 271 + 21540570 cttctcaaaaaaaagagtaaaacaAATGACAATGGGTTAGAAAGATTTAAAAAGTAAcaaatcttctgaa----------ttttcaaaaaactcatattcttttttgatCTCCCACTTTTTTGCT--CGCTTGTTCTTG----TTAAG-AAGAGTAACATTTTTCTC-----------TTAACA--CGCACCACCATATCGGTT-----------TTTCTCGAAGAACTGAATGAATAACAAGAACGAGAGATCGAAAATATATGCGAA--GAGCTCATC-TTCAAAATGCTCAACGCATGCATAACATATCAGA
i cb4.chrX              I 415 I 5478
s caeRem4.Crem_Contig0   1962865 283 -  4500979 attc----aaaagaGAGTAAAACAAATGACAATGGGTTTGGTCcaacaaaaagagaataaatcTTCTGAACAAACTATTTCTTTc-----actcatctttttt-------tcttactcttttttt--ttcttttctttgaaattgaagaaagagttactttttcttcactgatacacatacaca--cacactACAATTTCTGATGCGtctcttcgtttttcgaaATACTGAATGAATAACAAGAACGAG---CTCAAAATATATGCG----GAGCCCTTCGTTGAAGGCGCTCGGCACATGCATAACGTA-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I

a score=598.000000
s ce10.chrX              5131042 19 + 17718866 GCACAAAACGAAACATTTT
s caeRem4.Crem_Contig0   1963148 19 -  4500979 TCAAACAAGGCAACATTCT
i caeRem4.Crem_Contig0  C 0 I 134
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I

a score=0.000000
s ce10.chrX              5131061 723 + 17718866  
e caePb3.Scfld02_0       3374684 1395 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I
e caeRem4.Crem_Contig0   1963167 134 -  4500979 I

a score=24361.000000
s ce10.chrX              5131784 181 + 17718866 ACTCACTATAGTATTTTTCGTTGTCTATAATAAACAATTTGTTGAAAGTAAGTAAGGAGAAGATGTACAGACGCTCATATTCGCCCGCCATATGCCATTCAATGAGCGGCACCAAAATTAAATTTGACGTCTTTCGCTCTC-TACAATATATTTTTGT-------------GAAGACGTTCACA---CTAATCACATT
s caeRem4.Crem_Contig0   1963301 186 -  4500979 ACTCGCTATAGCGTTTTTCATCGACCAAAATAAGCAATTT-------GTGAGCAGTGAGAAGATGTGCAGCCGCTCATCTT----AGCCATATGTCATTCAATGAGCGGCACCAAAATTAGATTTGACATGTTTCTCTCGG-GGAATTATCTTCTTTTGGAGGGGATAGAGCAAGACGTTCACAATGCTAATCAACCG
i caeRem4.Crem_Contig0  I 134 C 0
s caePb3.Scfld02_0       3376079 185 +  4147112 ACTCTCTATAGCATTTTTCATTGGACAAAATAAGCAATTT-------GTGGGCACTAAGAAGATGCGCAGTCGCTCATCCT----CGCCATATGGCATTCAATGAGTGGCACCAAAATTAGATTTGACATGTTTCGcacaacaaaattttcatctctc--agaaaataaaagaagacgTTCAGATGGCTAATCAGACT
i caePb3.Scfld02_0      I 1395 I 41365
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I

a score=-968.000000
s ce10.chrX              5131965 690 + 17718866  
s caeRem4.Crem_Contig0   1963487 555 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 108
e caePb3.Scfld02_0       3376264 41365 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I

a score=0.000000
s ce10.chrX              5132655 223 + 17718866 AAATGTCAGCTTTTGGATAAAATTTGGTTCTTTTTTGTTGAAATTTAAGTTTTAATGCTTGCTCATTTTTGAAATGGTTTTTAATATTTTTCAGACAGTTGTTTCTCCTACTTTTAAGGATTTGTCTATATTAGTTTTAAGACATAATTTTTTTAATGAGTAACAAATTTAAACTATTGAAGTGCGAGTCTTGATGGAGAATATATGGTATGCTATATTCACC
e caePb3.Scfld02_0       3376264 41365 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I
e caeRem4.Crem_Contig0   1964042 108 -  4500979 I

a score=348.000000
s ce10.chrX              5132878 10 + 17718866 AATTTTGTTT
s caeRem4.Crem_Contig0   1964150 10 -  4500979 AATTCCGGTC
i caeRem4.Crem_Contig0  I 108 C 0
e caePb3.Scfld02_0       3376264 41365 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I
e cb4.chrX              10461751 5478 + 21540570 I

a score=896.000000
s ce10.chrX              5132888 31 + 17718866 TTCTTTTGAAAAACGTTTTTTGTGGAGGTAT
s cb4.chrX              10467229 31 + 21540570 tttttttgaaaattgtgttttcttctagaat
i cb4.chrX              I 5478 C 0
s caeRem4.Crem_Contig0   1964160 14 -  4500979 -----------------CTTCCTGGAAGAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3376264 41365 +  4147112 I
e caeJap4.Scaffold17934   527149 5021 +   591668 I

a score=-2200.000000
s ce10.chrX              5132919 40 + 17718866 -------CACTAA-CCAGAGCAACTTTCCAGA-----ATA-CACTTATGACACT
s cb4.chrX              10467260 40 + 21540570 caaATTACAAAGACAAACAACA---TTTCAGA-----TTCCCAAGTCT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1964174 44 -  4500979 C---TTTCAAACA-AAATAGCATATTTCCAGATTTGCTTCACAATTTT------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3417629 40 +  4147112 -------cacaaa-taaaaacatatttccagA-----TTC-CACTTTTGATATT
i caePb3.Scfld02_0      I 41365 C 0
e caeJap4.Scaffold17934   527149 5021 +   591668 I

a score=124145.000000
s ce10.chrX              5132959 666 + 17718866  
s cb4.chrX              10467300 731 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1964218 689 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     16621 656 +   141584  
i caeSp111.Scaffold567  N 0 C 0
s caePb3.Scfld02_0       3417669 667 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   527149 5021 +   591668 I

a score=69958.000000
s ce10.chrX              5133625 121 + 17718866 GGAGTGAGATCGAACGTGAAAGACCAACATTTACATCG--AGG---CTGTTGATTAGACGGCCGT--------------CGTTTTTTTCCATTTCGTCCTGTTTGAAATAATACG-----GAA-----------GAAGAAATGAAAAA-----------------AGACGAAA
s cb4.chrX              10468031 149 + 21540570 gcGGTGAGATCGAACGTGAAAGACCAACATTGACATCGAAGGGGACCTGTTGATTAGTCGGCCgt--------tggttttttcttttcc-------ttctgtTTCAAATATTATGCATGAGAAGGTGGTGgtggagagaaagagacaa---------aaaagtgGAGATGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1964907 128 -  4500979 ggggTGAGATCGAACGTGAAAGACCAACATTTATATCG--GGGGGACTGTTGATTAGACTACC----------------Cgtctttttt-------tcctgtttcaaatattatgcatgagaa-----------aaagaagaagacaa---------aaaaaaggagatgaaA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     17277 128 +   141584 GGAGTGAGATCGAACGTGAAAGACCAACACTTACATCG--GGGGGA-TGTTGATTCGACGtcaat--------------cttctctttt-------tcctgtttcaaatAATATGCATGAAAA----------CTAGGAGAAGAACAG-----------AAACGAAGATGAAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3418336 135 +  4147112 GCAGCGAGATCGAACGTGAAAGACCAACATTTACATCG--GGGGCACTGTTGATTAGACGCCTGt--------------cg----tttt-------tcctgtttcaaataatatgcatgagaa-----------gaagaaaagaatagtagacagaaaaaaaagaagatgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   532170 116 +   591668 GAAGTGAGATCGAACGTGAAAGACCAACACT------G--TGG----TGTTGATTAGTTTTCACTATCCTATCTATCTCCAGGTTTCTT-------TCCTGTTTCAAATATTATGCGTGacaa--------------------aataa------------------gatgaaa
i caeJap4.Scaffold17934 I 5021 I 692

a score=1689.000000
s ce10.chrX              5133746 141 + 17718866 GACA-----------TTTTTG--AGTCCAA-------------------TAGCA-TTTAGCACTTTTGTTTTCAAAGTTG---GTC---------------------------GAATTATTA-TTTTTTAATCTTAAAGTTACAG---------CG--TCTTCTCACGTTTTCCCAG-----TTAACTTCTAAAATTGGAAAAAACTATAAAATGAGAAAA-
s cb4.chrX              10468180 185 + 21540570 ATCTGtcctctaaa-tttttg--aatccagCCACCCCGG------GTGGTAGTGGCGTAGCActtttgtttttacgcctt---cttttttcttcattttgctACCACTCCTCCTAGTcgcga-cgtct---tctgaaaatagaat--------tca--tgttttt---ttttcgtcg---ctTCTTCTTTTGTAATTTTGGA-----ATACACTGTAAGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965035 161 -  4500979 ATCTGGCctctaaactttttg--aatccaaCCTCCAGGG------GTGGTAGCG--GTAGCACTTTTGTTTTTACGTCTT---TTT--------------------------CTGGTTgaga-cgtct---tctgaaaagaaTAC------AATCA--TGTTTTCACAGTTTCTTCG---CTTC----tctaaaattcagaaa---catACACTGTAAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     17405 168 +   141584 ATCCGGCCTCT------------AATCTAGCCGCCCAGGTGCGTGTTGGTAACG--GTAGCACTTTTGTTTTGACACCAT---CTT-----------------------CTACTGGTTACAAGTTCCT---TTTGAGAAGAACTCGCATACGATCAagtttttac---attttttgg---ttttatttttgagaaccAAAGAA----ACAAACCGTGAAAA-
i caeSp111.Scaffold567  C 0 I 41
s caePb3.Scfld02_0       3418471 168 +  4147112 atctggcctctaaattttttctcaatccaGCCGCCCAAG-------TGGTAGCA--GTAGCACTTTTGTTTTGGTTGTTTTGACTA-----------------------TTACTGGTTACGA-TGTCT---CCTGAAAAAGATACCAATACACTga--ttctttc---gttttcttgcTTCTTCAGTTTTAGGAACGATA---------ACACTGTAA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   532286 692 +   591668 I

a score=-6909.000000
s ce10.chrX              5133887 47 + 17718866 TGATACAACATAGTGTAAAACTGGAATAAGAAGT--------ATT---TGTGACACAC----------
s cb4.chrX              10468365 36 + 21540570 ------------------------AAGTAGTGGC--------ttgaattttgacccaaaCACACTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965196 32 -  4500979 ----------TAGT----------AAGAAGAAGC--------ATCAA-TTTGACCCA-------TCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3418639 47 +  4147112 --ATA----ATATT----------GAGAAGAAGCGGTTTTGGATGAAAAGTAACCCAAACACG-----
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17934   532286 692 +   591668 I
e caeSp111.Scaffold567     17573 41 +   141584 I

a score=10470.000000
s ce10.chrX              5133934 288 + 17718866 -----TATC-AAAAAAATG--------CTTTTATATTTAGA----ATTTCCAAATCAAAAAC--AAAAATAACAAAAAATC-----AAACCGCCCTTATGC-GCTAGGTACC-TTTGCGGTCA--------ACACGTCA----CGG-CAAAACCG--AAAT--------------------------ATCTTGAAAAGT-ATTGATACTGCAATCCATCATCTTTT--TCTACCGTTCCAA-TCTTG--TTA-------CTGATAGCGATTTTTGTGATCG----TCTCTGTAATGCGATACGTTGCACTTGACAAATCTAACATCTGAATAACAATC------TCAAAATACAACCTTCAATTTTCTTTTCTTATTTT-----------------------------------------------------------------
s cb4.chrX              10468401 340 + 21540570 ACTCACACC-AATACAGTTAAGAGAAACCTTGAGAATCAAG---AAAAACCGTCA---------GAAAATAGAATAACACTGTTACGTACCGCCC--AAATGGCTAGTTTTT-ATTTcatatttatcaaaaatacGTCATTTTTTG-TATACTTGATAATT-------------------------AATCTAGAAC----ATCAAAATAA------------GTTTCGAAAACCGTTCCCATTCTTA--TCATATATTTTCACTGT-GGTTTACgtgataat---tttttgtgatggGACTACTTGCACTTCAACAGTATA----TTCACTATCAATCGAAGATAAAACAATCAAGGTCTGATCCTTTC---------CTCT----TTCTG--------------TTTCTATCC---ACGCCCTCCAAA------ATTGGACtt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965228 390 -  4500979 CATCGTATT-AGT--------------CCttgagaatcaagaaaaaaaaccgtcgagaaaaaatgaaaatagaacaaCACT-----GAACCGCCC--ACGC-ACCAGTTTTC-GTTGCGCTTC--------GGacgtcattttttgatatactTGTTAATTactaaatataaaaataaaagcaaaaaGTCTAGAACACGTATTAGAACAACTATCCATCATCGTTTTAAAAACAGTTTAGTTTCTGA--AAACGTTCACTCGTGGTGGGTTTGTGTGGTGATTAATTTTTGTAATGGGATTGCTTGCACTTCAACAATATA----TTCGCTATCAATCGGAGGTGAAGCAAACAAGGTCTGATTCTTTCTT--TGATTCTCTTTaattctc--------------cttctttcttAGACAGTCGCTAAGTGTTTTATTCGAATT
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold567     17614 351 +   141584 -----TATC-AAA--------------CCttgagaatcgaa----aaaaccgTTTAGAAATC--AAACATGGAATAACATC-----GAACCGCCC--ACGC-ACCAGTTTTCATCTATATTTG--------GGACGTCATTTTCTA-TATACTTGTTAAAT-----ATCTAAAAAT-----------ATCTTGAACATCAATTAACCCTTCCATCCATCATTGCTT--CACATCGTTCGTATTCATG--ATAAACGCTTTTGCTGGCTATTTCCGCGATTAA---GTTTTGTAATGGGACTACTTGCACTTCAACAATACA----TTCGGTATCAATCGGAAGTGAAACAAGAAAGGTCtgaatcttttcttctctttccttgCAATATTAACAAAATgtgtcattttcaattt---gcaTTTC--------------------
i caeSp111.Scaffold567  I 41 I 29
s caePb3.Scfld02_0       3418691 325 +  4147112 -----TAGCAAAA--------------CCTTGAGAATCAAG----AAAACCgtttagaaatc--aaaaatggaacaacACA-----GTACCGCC------C-ACCAGTTTTTTATTGCGCTTC--------TTACGTCATTTTTTA-TATACTTGTAAATt-----agtaaaaaaga---------aatctaGAACATC-ATTTACACTTCCATCAGTC---------TCCACCGTTCTGGTTCGTGACATAGACG--------GTGTATTtcttctgttga---tttttctgatgggATTACTTGCTCTTCAAGAATATA----TCCGTTATCAATCGGATGTTAAACAAACAAGGTCTGGATCTATAATGCAGTTTCT---CGGTGCttaaaaaa--------cttcttttt---gtatttt--------------------
i caePb3.Scfld02_0      I 5 I 21
e caeJap4.Scaffold17934   532286 692 +   591668 I

a score=-2576.000000
s ce10.chrX              5134222 8 + 17718866 GACAAACA-
s cb4.chrX              10468741 8 + 21540570 -aatcattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965630 8 -  4500979 -AATAGAAA
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold567     17994 8 +   141584 GAGAAGCT-
i caeSp111.Scaffold567  I 29 C 0
e caePb3.Scfld02_0       3419016 21 +  4147112 I
e caeJap4.Scaffold17934   532286 692 +   591668 I

a score=-1505.000000
s ce10.chrX              5134230 50 + 17718866 AATTCCATAAC-AGC-----------------ATATTTT-------CAGGTGTACGCGTCTCCTCAAATTCAAAA--------
s cb4.chrX              10468749 80 + 21540570 ttttaaata---aatttttattttaattttcgattttttatacTTCCAGGTGGAGGTACCATCTCAAAACCAACACTGCAACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965638 73 -  4500979 TATCACATa---agatatttcagaaacactGAATGTTTT-------CAGGTGGGCTCTTCATCTCAAAGTCAACAGAGCAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18002 52 +   141584 ------------AATTAGT-------------ACGATTT------CCAGGTGGAATCAACATCTCAGACTTCGCAGTGCAATT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3419037 72 +  4147112 GATTCCGTTGAGAACtggtc-----attttcaatttctt------ccaggTGGAATCAACTGCTTGCAAGCAATAGAACAATT
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17934   532286 692 +   591668 I

a score=72308.000000
s ce10.chrX              5134280 151 + 17718866 ATGATATTATCCAAAATAATCCGTCCAGAAGTGGCTT------------TTAATGGTGAGTTT--T---------------TCAGATTATA--------TCACTAACAATAAAT----CT------AATTGAAGATCAAACCGACAGAGGAAAAGGGCGGCTGATTGTCATTAAGAAGACTGAAAGTAATTTCTTTGT
s cb4.chrX              10468829 159 + 21540570 AtgatattatcaaaaattattcgGCCAGAAATGACTT------------TTAATGGTGAGTTC--TTGTGTGACTG-----GTTAATTTG----------------TAATTAAC----cgcttaaaaattgaagatcaaAGCGACAGAGGAAGAGGACGCCTGATTATCATTACAAACCCAGAAAGTAGGTTTTTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1965711 174 -  4500979 ATGATGTCATCAAAAATCATCCGGCCAGAAGTGGCGT------------TTAACGGTAAGTTCAATTGTGTAGCTGCTGTTTTTAACTTGT--------CAACAACTGATTAAC----TTCTTAAAAGTTGAAGATCAAACCGATACTGGCAAGGGACGTCTCATTATCATCAAACGGACTGAAAGTaagttctttgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18054 160 +   141584 AtgattttatcgaaaataaTTCGTCCCGAAGTTGCTT------------TTAATGGTAAGCTA--T---------------TTGAATCGGT---------GAGAGGAGATTAATaatgttctcaaaaattgaagatcAAACCGACATTGGAAAGGGCCGCATGATGATCATCAAGCGAACTGAAAGTAGGTTCTTTGT
i caeSp111.Scaffold567  C 0 I 189
s caePb3.Scfld02_0       3419109 159 +  4147112 ATGATGATGTCGAAAATAATTCGACCAGAAATGGCTT------------TTAACGGTAAGCTG--TTG-------------TTAAATTGAT--------CAACCACATATTGAC----TTCTCTAAAGTTGAAGATCAAAGCGACAGAGTGAAGGGTCGTCTCATTATCATCAAGAGGACTGAAAGtgggttttttct
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17934   532978 169 +   591668 ATGATGGTATCCAAGATAATACGACCGGATGTGTCGTTCAATGGAGGCATTAACGGTAATGTT--T---------------ATTAGTTTCTGAGAATCATCATCGTTGACTGAT----C-------AGTTGCAGATCAAACCGAAAGAGTGAAGAATCGAGTAATGGTCATCAAAGTCTCTGAAAGTAAGTTTATGT-
i caeJap4.Scaffold17934 I 692 C 0

a score=910.000000
s ce10.chrX              5134431 1 + 17718866 T
s cb4.chrX              10468988 1 + 21540570 T
i cb4.chrX              C 0 I 609
s caeRem4.Crem_Contig0   1965885 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3419270 1 +  4147112 t
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17934   533147 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     18214 189 +   141584 I

a score=1092.000000
s ce10.chrX              5134432 2 + 17718866 TT
s caeRem4.Crem_Contig0   1965886 2 -  4500979 tt
i caeRem4.Crem_Contig0  C 0 I 194
s caePb3.Scfld02_0       3419271 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   533148 2 +   591668 TT
i caeJap4.Scaffold17934 C 0 I 1634
e cb4.chrX              10468989 609 + 21540570 I
e caeSp111.Scaffold567     18214 189 +   141584 I

a score=256.000000
s ce10.chrX              5134434 11 + 17718866 GTAAAAATGAT
s caePb3.Scfld02_0       3419273  8 +  4147112 g---aaatgat
i caePb3.Scfld02_0      C 0 I 158
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeSp111.Scaffold567     18214 189 +   141584 I
e caeRem4.Crem_Contig0   1965888 194 -  4500979 I

a score=0.000000
s ce10.chrX              5134445 876 + 17718866  
e caePb3.Scfld02_0       3419281 158 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeSp111.Scaffold567     18214 189 +   141584 I
e caeRem4.Crem_Contig0   1965888 194 -  4500979 I

a score=91.000000
s ce10.chrX              5135321 1 + 17718866 A
s caeSp111.Scaffold567     18403 1 +   141584 A
i caeSp111.Scaffold567  I 189 C 0
e caePb3.Scfld02_0       3419281 158 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeRem4.Crem_Contig0   1965888 194 -  4500979 I

a score=273.000000
s ce10.chrX              5135322 1 + 17718866 T
s caeRem4.Crem_Contig0   1966082 1 -  4500979 t
i caeRem4.Crem_Contig0  I 194 C 0
s caeSp111.Scaffold567     18404 1 +   141584 T
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3419281 158 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I

a score=520.000000
s ce10.chrX              5135323 29 + 17718866 TATTATTTCAAACATCACTTTTTTATTTT
s caeRem4.Crem_Contig0   1966083 25 -  4500979 tatttttttgaacgTCACATAGCTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18405 28 +   141584 CACta-cctgaaaaacaattctctcattt
i caeSp111.Scaffold567  C 0 I 50
s caePb3.Scfld02_0       3419439 26 +  4147112 TATTA---TTAACATcactcttcttattt
i caePb3.Scfld02_0      I 158 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I

a score=-2423.000000
s ce10.chrX              5135352 34 + 17718866 GAATTATTCTAGATATC----------AATATCATTTTTCGTAA-----------
s caeRem4.Crem_Contig0   1966108 28 -  4500979 ---------------------------GAAAACAattctctctcgtttttcaatA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3419465 38 +  4147112 ------ttctcaaccTTATCAATGCCTGAAAACAGTTCTCTTGa-----------
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeSp111.Scaffold567     18433 50 +   141584 I

a score=5063.000000
s ce10.chrX              5135386  83 + 17718866 TTATCATTTATTTTCTCTTTTATTTTATTT-TTGTTATGTTCTCTC----------------------------CAGACCAAGTTCAT--------ATCAATGATCTTCAGTTTAGTTAA
s caeRem4.Crem_Contig0   1966136 107 -  4500979 ---GTATCCcttccatctctttttttcttt-ttctgccaTTCCTTCCTCTCCTTGACCGAgtctttct------caaaaacagtACAC--TTTCT-GCAACTGATCTTCAGTTTAGTCAA
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold567     18483  86 +   141584 ttatcatttgtCATGTCTCTCTGTCCATCG--------AGTCCCCCttttat----------------------cgaaaattgtATACAACT----ATAACTGATCTTCAGTTTAGGTAA
i caeSp111.Scaffold567  I 50 C 0
s caePb3.Scfld02_0       3419516 118 +  4147112 tttttatttccttcgtcttccttttcaacatttctgttattttctctttttttc--cccacTCGACTTCAACTGCCAAAGATGTATACAATTTCTCACAACTGATCTTCAGTTTAGGTAA
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I

a score=-1164.000000
s ce10.chrX              5135469 20 + 17718866 CAATAGAAATATA----TTTGCAC
s caeSp111.Scaffold567     18569 24 +   141584 CTGTGGAAGTCTCTCTCGTTATca
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3419634 13 +  4147112 CTGTGAGAGTCCc-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeRem4.Crem_Contig0   1966243 14 -  4500979 I

a score=4899.000000
s ce10.chrX              5135489 63 + 17718866 TGTTTTGATTTTTTCTCAAACCACAGGAT-------CCTAAATCAATTGATTATATGATT-----------AGTGATAATA---
s caeRem4.Crem_Contig0   1966257 73 -  4500979 TGTTTTG--TTTCTCACACACTCTGGGAC-------GATAGATGGAATCGCGGGACAACGAATGATAGCG--ATGATAATAAAA
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold567     18593 72 +   141584 tattttg--tttctctcaCACTATTGGAcagacgaaaaaaaatagatgaa------gGTGGAAGGAAACG-AGTGATAATA---
i caeSp111.Scaffold567  C 0 I 94
s caePb3.Scfld02_0       3419647 72 +  4147112 tgttttg--tttctctcaCACTTTGGTAC-------GAAAAATAGAGGAGGAGACTGATGGAAAGGAAGGCAGTGATAATA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I

a score=-3528.000000
s ce10.chrX              5135552 62 + 17718866 ------------------TGATGTCTGCTGTAAAATCAAAACAC-----ATAAACATAGTT---AGATTTCCAAAAAACC-----CCCAGAGG---
s caeRem4.Crem_Contig0   1966330 92 -  4500979 ----CTAACGAGTAAGACTGCCAGGGGCAAGGGGTCGGCGGCACATGGAATCATCATCCGTCAGCGAATCTTGATATACTGAACAAGcagaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3419719 87 +  4147112 AAAACTAACGAGTAAAACTG-TATTGATGATAGGGCCACAGCAC-----ATCATC-TTCTTGGGAGAATCTTGAGAAACCGAAATACCTGAAAG--
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I
e caeSp111.Scaffold567     18665 94 +   141584 I

a score=2373.000000
s ce10.chrX              5135614 45 + 17718866 GCAATTAGTGTCACACGTTCGA-ATTTCTGTTGTTAACGATGTTGA----
s caeRem4.Crem_Contig0   1966422 48 -  4500979 acggtttgTGTCACACGTTCTCTGTTACCGTTCTCCAAATAAATTAAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18759 46 +   141584 ACAATTCCTGTCATGTGTTCTATGTTTCTGTTATC----ACAGTTATGTA
i caeSp111.Scaffold567  I 94 C 0
s caePb3.Scfld02_0       3419813 49 +  4147112 TTCGTTGTGGTCATATGTTCTCTGTttctgttctcaaaaaaaattttg-g
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10468989 609 + 21540570 I

a score=50994.000000
s ce10.chrX              5135659 137 + 17718866 AAAAGCCACGTCGACAGGCCGA--AATA------------------AGAGTTTAGTCCAAGTTGCATTGAAAAGTCACGTGAATTG-GAAGGA---CGCAGAAT-TGCGCTGTCATTTTGGATAGCC---TATCACCCAGTAAGGCTTGACTAATTCTAAGTGAT
s cb4.chrX              10469598 153 + 21540570 AAAGACCACGTCGAC---CGAAATAATA-GTATAGAACTGTACAAGAGAGTTTAGTTCACGTTGCATCAAAAAAGCACGTGAATTGAAGTGTA---TGGACGAT---TTCTGTCATTTCGGATAGCCCTTCATCACGAGAC--GGCTTGTCTAATTCAAAGTGAt
i cb4.chrX              I 609 I 1138
s caeRem4.Crem_Contig0   1966470 142 -  4500979 AAAGATCACGTCGAC---CGAA--AACG-GAAAGTGATTGTA----AGAGTTTAGTTCACGTTGCATCTCAAAAGCACGTGAATCG--GGGGA---CAGACGAT---TTCTGTCATTTTGGATAGCC---CATCACACAAT--GGCTTGTCTAATTCGAAGTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     18805 147 +   141584 AAAGAACACGTCGGC---CAGG--GATACAAATGCAATTATG----ACAGTTAGGTTCATCTTGCATCTAAAAAGCACGTGAATCG-TGTGAA---GAGGCAAcctttttttccgttttcggTTGCC---CATCACTAGAC--AGCTTGGCTAATTTGATGTGAT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3419862 143 +  4147112 aaagaccACGTCGGC---CACG--GATA-AGATGATATTATG----AGAGTTTAGTTCATCTTGCATTAAAAAGGCACGTGAATTG-AGTAGATGGAAGACAAC------TGTCGCTTTGGATAGCC---CATCATCACGC--AGCTTGTCTAATTGGAAGTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I

a score=1168.000000
s ce10.chrX              5135796 16 + 17718866 ---TGCAATGGATGTACAA
s caeRem4.Crem_Contig0   1966612 16 -  4500979 GGACGTA---AAGGCACGA
i caeRem4.Crem_Contig0  C 0 I 752
s caeSp111.Scaffold567     18952 19 +   141584 TGTGGCAGAGGAGGTACAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3420005 16 +  4147112 CGTTGCA---AAGGTAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I

a score=1430.000000
s ce10.chrX              5135812 6 + 17718866 TTGAGT
s caeSp111.Scaffold567     18971 6 +   141584 TTaagt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3420021 6 +  4147112 Ttgagt
i caePb3.Scfld02_0      C 0 I 687
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeRem4.Crem_Contig0   1966628 752 -  4500979 I

a score=326.000000
s ce10.chrX              5135818 43 + 17718866 TAATGCAATTCTATGCaattataatttttaaatagaatttgat
s caeSp111.Scaffold567     18977 35 +   141584 aaatgaaaaacaat--agatATATTT------TGGGATTTGAT
i caeSp111.Scaffold567  C 0 I 793
e caePb3.Scfld02_0       3420027 687 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeRem4.Crem_Contig0   1966628 752 -  4500979 I

a score=0.000000
s ce10.chrX              5135861 529 + 17718866  
e caePb3.Scfld02_0       3420027 687 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I
e caeRem4.Crem_Contig0   1966628 752 -  4500979 I

a score=3714.000000
s ce10.chrX              5136390 87 + 17718866 GTTGACACTTGTCTCGCGTGACCGG-AAAAATTTGCATTAGAATTGATATTTGTGAT---CATTGATGTAGGATTGGAGTTCAAAATACCA
s caeRem4.Crem_Contig0   1967380 91 -  4500979 GTTTACTCTTGGCTCGCGTGACTGTCAAAAATTAACATATGAATTGATGATAGTGATGAACATTGATAGAAGATTATAGTTCAGAGAACCA
i caeRem4.Crem_Contig0  I 752 I 215
e caePb3.Scfld02_0       3420027 687 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I

a score=0.000000
s ce10.chrX              5136477 563 + 17718866  
e caePb3.Scfld02_0       3420027 687 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I
e caeRem4.Crem_Contig0   1967471 215 -  4500979 I

a score=280.000000
s ce10.chrX              5137040 7 + 17718866 TGGTAGG
s caePb3.Scfld02_0       3420714 7 +  4147112 tgataaa
i caePb3.Scfld02_0      I 687 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I
e caeRem4.Crem_Contig0   1967471 215 -  4500979 I

a score=11287.000000
s ce10.chrX              5137047 247 + 17718866 AGTAAAAATTTGAAAAATGATGACTCACCT---CCGGTATAAGGGGTGAGAAAAAAACAACGTTTCATCTCAGTATATATTTGTTG---------TTTTT------TGATTCATTTATTGTTTTTTCTTCACGGCCAAGCATTTAGTTTATTTGCTCTCGAAA----ACGCTAAACGCAAACTCTTTCT-------TCTCAACACTTGAGAAAAACTGTAAAGTGTTGCCAAAGAATGCAGAAAATAGTACTATTTATATTTGTT---------TGCTTTTCATT
s caeRem4.Crem_Contig0   1967686 254 -  4500979 aataaaaatcCAAAGAATGATGATTCATGC---Actgaaaaacg-----tttgaaaacaacatttcaaCTCAATATTCcgctttctat-------tttttccccAATGATtcatttatcttctt--ttt--cgaacAAATAGGTATGCTATTTGTTCTCGAAA----CCTCTGT--GCAAACTATACCTCAGCACAATCTAGTACTCGA-AAGAACTGCTAAGTTTTGCC-AAGAGTCAAGAAAATAGTAATATTTGCATTTATTCCG----Agtatttttcgtt
i caeRem4.Crem_Contig0  I 215 I 125
s caePb3.Scfld02_0       3420721 231 +  4147112 aataacaat--aaaagGTGATGATTCATGCTTACctga------------tgaaaaacaaagaatcgactcaatataacccttttgatcattcgatttttc-----tgattcatttatcttttttcttt--tcaccctaT-----CGTTATTTGTTCTCGAAAAGCGTCTCTGA--GCAAACTAT-----------AGGTAATACTTGAGAATAACTGTAAAGTTTT--------GTGTGGAAAATAGTAATATTTGCATTCTTTCCGTTACAAtagt-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I

a score=637.000000
s ce10.chrX              5137294 15 + 17718866 TTACCTGATTGTTTC
s caePb3.Scfld02_0       3420952 15 +  4147112 ttatatttttgtttc
i caePb3.Scfld02_0      C 0 I 178
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I
e caeRem4.Crem_Contig0   1967940 125 -  4500979 I

a score=0.000000
s ce10.chrX              5137309 318 + 17718866 AATCTAATTAAAAATTGAAAAATCCCAATAAAAAGCGGAGTAGCATCAGTTTGCTGTGGTGCATTCTTTGTCTAAACACATTTATACTAGTCCAATTGACAATTATATGGAAACTGCTCAAAATAATATATGATAATATATGTGTTTTTATTTAATTTTCAATGAAAGTTTTGATAAACCGCAAAATTTTAAAATTTCGAGTTTTCCGAGTAATTAAGAGCAACATCGCACAGTCAAATCAGGATTGGGCATAAAATCAAATCATTGCCTAAAATACTCAAATAAATTTTATAAGAATAAAGAACCACCGAGTAACTG
e caePb3.Scfld02_0       3420967 178 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeSp111.Scaffold567     19012 793 +   141584 I
e caeRem4.Crem_Contig0   1967940 125 -  4500979 I

a score=488.000000
s ce10.chrX              5137627 25 + 17718866 CCACTTTTTGGCATTTCATAAAAAA
s caeSp111.Scaffold567     19805 25 +   141584 CTACCATCTAACTCTTAGCAAAAAC
i caeSp111.Scaffold567  I 793 C 0
e caePb3.Scfld02_0       3420967 178 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e cb4.chrX              10469751 1138 + 21540570 I
e caeRem4.Crem_Contig0   1967940 125 -  4500979 I

a score=-4021.000000
s ce10.chrX              5137652 145 + 17718866 ------------TTTCAAAAAAGT------TTGAATAGTTTTGGT-ATTTATGTTTGTTAT-TTTAGCATTGCAAAAATTTTTTAAACAAATTTTCAAAATTAACGAGTA---TACTACTAT--------AACGAGTATAA--------TACCT---ATAAAATTCAGAA--TACATTTGAATTTACTA----
s cb4.chrX              10470889 164 + 21540570 ------------tttcagcaaagtAACTATTCGAATAATTTAGTTGATTTCCAACTTCTAc-ctttggttttcaaaaaaatcggaaatcatTTG----AGTTATCAGTTAAGCAATACGTTTCCtgcaaaaactgataaaattgttagtta------aaatagttcaaaa--tgtAACTGGTTTCTTTT----
i cb4.chrX              I 1138 C 0
s caeSp111.Scaffold567     19830 172 +   141584 TGtcaagttttctttcaacaGTGCAGAAAAT--AGTAAT-------ATTTGCGCTtgttatatttttgattacaATATTATTACGCATAACTTTAACCAATCATTAGCTA---AATTCATTT--------AGTTGGTACAA-AGTTAAATACCCAccaaaaagttaaaaaatagtattttgTTTGAACTAAAT
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3420967 178 +  4147112 I
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e caeRem4.Crem_Contig0   1967940 125 -  4500979 I

a score=67.000000
s ce10.chrX              5137797 1 + 17718866 C
s cb4.chrX              10471053 1 + 21540570 T
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold567     20002 1 +   141584 T
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3421145 1 +  4147112 C
i caePb3.Scfld02_0      I 178 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I
e caeRem4.Crem_Contig0   1967940 125 -  4500979 I

a score=3201.000000
s ce10.chrX              5137798 59 + 17718866 TATCTGACCCCAAAATCTCGCGTTAGGA-GAATAGTCGATTTAAATTTGA--AAATGG--CGTC
s cb4.chrX              10471064 55 + 21540570 AATCTCATTTTCAAGTCTTTAA-------GGACCAATATACCGTTTTAAATTAGATAG--TGTC
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   1968065 53 -  4500979 TATCCAAAGTCAAAATCTTTGT-------GAATCGAtgaatcaaattcaa--aaatgg--tgTC
i caeRem4.Crem_Contig0  I 125 C 0
s caeSp111.Scaffold567     20003 62 +   141584 TATCTATCAAACAAATCTTTCAATAAACTGAATCAATGGATGcaatttga--aatcgaataaaC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3421146 59 +  4147112 TATCTGACtttgaaatctttcaaatCGC-AAATGAAAgaatcgaattcaa--aattgg--agaT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   533150 1634 +   591668 I

a score=4369.000000
s ce10.chrX              5137857 223 + 17718866 GTCCG----------TTTCAAGGACTTCTGTATAATTGT---CC-----GTTTGTATGCCTCCGTCTC-------TCTAGTACCGTTTCTTCACA-ATGA-----TCGCCGTG------GGGTG------GAAACAATATCTTTGTTCG--AAGGTTTTCCACTTGGAAACATCT-TTGTACCAA--C-ACCCAGACAAAA---CAGGA----------------------AAAACTTT---------------CGCAGAAATTCGATTTCTGGA--GA--CTGCAGCAGTGTTTGAAACGTGTAAGAAACAAAAA----
s cb4.chrX              10471119 196 + 21540570 CTCCGACAACCTCGAATTCGAGGTCTTCCGTATAATTAT---TC-----TTTTGTTTGCTTCCGTCAC-------CC--GTACCGTTTTCTCCTAGAAGG-----TCGCAAAAGTGTGTGAGAA--CAATag-------------------------------tcgaaa-----t-tttcggaaa--c--ccCCGCGAGAA-------------------------------CAACTtt---------------caaaagtggaaaatttaggaatcgA--CCGGAGAG------AAATAGTTTGTGATG-AGACA----
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   1968118 238 -  4500979 ATCCGACAGCAGTCGATTCAAGGACTTTTGTATAATTGC---CCG--TTGTTTGGTTGCCTACGTCTC-------CC--GTACCGTTTCTTCACA-ATGG-----TCAGAAAAGAGCGAGAGAG--AGACAGAACAATATCTTTGTTTAG-AAGGGTTTCATTTCGGAAA---CT-TTTCGGAAA--CGACACAGACAGAAGAACACG------------------------caacttt---------------caaaagtgttGATTCctgaaa--ga--atgaaatg------aaaatgtttagaaCATAAACA----
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold567     20065 219 +   141584 GAGCG------GTCGATTCAAGGACTTTTGTATAATTGCC--CCG--TTGTTGGACTGACGATTCCTT-------CC--GTACCGTTTCTTCACA-ATGG-----tcggagaa------gaaaa--gtggaaaacaAAGTCTTTGTTCGG-AAaggtttcattttcaaaa---ttctctcGCAAA--TGACGCAGAC-GCA---GAAA------------------------TAACTGC---------------AAGAAATTCTGTATTcagaga--aa--ttcaaatga----taGAATAACTTTGAA-----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3421205 226 +  4147112 GTCGG------GTCGATTCAAGGACTTCTGTATAATTGCCTTCCG--TTGTTTGTACGGCTATCCCTC-------CC--GTACCGTTTCCTCACA-ATGG-----TCGGAATC------GAAAACGAGGGAAAACAATATCTTTGTTCGACAGAGGTTTCGATTCCGAAA---TT-TCGCGCAGAATCGACGCAGACAATA---CAGG------------------------AAACCtt---------------caaaagttctgatttctaaga--aagttttgaata------agtaaacttctgaa-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   534784 273 +   591668 GTCCG----------ATTCAAGGACTTCTGTATAATTAC---CCTCCTTGTTTGTGCGCCTACGCCTCTTCTGAATC--GCACCGTTTCTCAACA-ATGAAAACCTGCGAGAGGAG---GAGAA--GGTCGAAATATTATCTTTGTTCG--GGTCTCTttatttcggaaa---tt-ttc----aa--cgACACAGGAGGAA---CAGGATATATTCCCTCCGTTTTCTATTAACACTTTCTTCTCGATGCAATACTAATGAGTGATTTTTCAAGA--AG--CCATGCTAG-----AAAAAGTCTGGGAG--TGACATTCA
i caeJap4.Scaffold17934 I 1634 C 0

a score=-7473.000000
s ce10.chrX              5138080 18 + 17718866 AATATATA---------AACTCAG-------------CGT
s cb4.chrX              10471320 18 + 21540570 -------------------TTTATTACTTCTCGCCGa---
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold567     20284 15 +   141584 AAGGTACA---------AATGTGT----------------
i caeSp111.Scaffold567  C 0 I 9
s caePb3.Scfld02_0       3421431 15 +  4147112 aagataca---------gttttgt----------------
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17934   535057 24 +   591668 AAGGTGCGTCCATAAATGTCGCAT----------------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1968356 31 -  4500979 I

a score=-5195.000000
s ce10.chrX              5138098 79 + 17718866 ATCGTCTTTTAAAAAA-------------------------CTCTGACCGGTCTA-AAAGTTGGAAACCAGTAT---GTATAA---GTACATTTTTCCAG---------TTTCTATAGTT
s cb4.chrX              10471338 81 + 21540570 -tttatttctgaaata----------------------aaattaaCTTCACCGTGTCTACCCCGAAACCAGTAT---GTGTAA---GTTCGTTTCTCCA----------TGTTTACTAtg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1968387 76 -  4500979 attcttttcaaaaat--------------------------ttctattcATTCAG-CAACTGGAAAACCAGTAT---GTGTAa---gtacatttcaat-----------tttttatgatt
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold567     20308 91 +   141584 AGTTCTCCTTGAAACAGTTCTTCTgactta------------tttttctattttataaGTATGAAAACCAGTAT---GTGTAA---gtacatttttca-----------tttttatactT
i caeSp111.Scaffold567  I 9 C 0
s caePb3.Scfld02_0       3421457 97 +  4147112 actattttttg---------ttatgtctaaaagttgacaacttttttcaaacataacAGTTATAAAACCAGTAT---GCCGAAAACGTACATGCTTCA-----------TTTTTATAGTT
i caePb3.Scfld02_0      I 11 I 24
s caeJap4.Scaffold17934   535081 75 +   591668 ------------------------------------ATAACCTTTTTTAAGTTTG------CCAAAACCAGTTTATCATGCGA---TTGGATTTATCGCGTTATCggcaattttattgtt
i caeJap4.Scaffold17934 C 0 C 0

a score=-3243.000000
s ce10.chrX              5138177 12 + 17718866 CAGGGCATTGTG
s cb4.chrX              10471419  9 + 21540570 ---tgtattttt
i cb4.chrX              C 0 I 49
s caeRem4.Crem_Contig0   1968463  9 -  4500979 ---GGTATCTTT
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold567     20399 11 +   141584 -ATGGTGACTCT
i caeSp111.Scaffold567  C 0 I 16
s caeJap4.Scaffold17934   535156  6 +   591668 -tttgtg-----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3421554 24 +  4147112 I

a score=73177.000000
s ce10.chrX              5138189 110 + 17718866 -AAAAGTAATA------AAATGCA---------CTATAGCGCG-----TGTGTGA------GTG-------TTTTTACTGCAGAGATTAATCAATGAAT----CGGAGAAACCTGTTTTAAATAACCTCTCCCCTTGCCTCGG---AGAAC
s cb4.chrX              10471477 113 + 21540570 -gaaaatgtaa------aaatgcA---------CTATAAAATG-----TGTTtaa-tatttgta-------tttttacTACAAAGATTAATCAATGAAT----CGGAGAAACCTGTTTTAAATAACCGCT--CTTGGCCTCCG---AGAAC
i cb4.chrX              I 49 I 39
s caeRem4.Crem_Contig0   1968488 113 -  4500979 -aaaaacacta------aaatgcA---------TTATAAAATG-----CGTtcaa-tatttgta-------tttttactACAGAGATTAATCAATGAAT----CGGAAGAACCTGTTTCAAATAACCGCT--CTTTCTCGTGG---AGACC
i caeRem4.Crem_Contig0  I 16 I 12
s caeSp111.Scaffold567     20426 116 +   141584 -AAAGGTTGTA------AAATGCA---------CTATAAAGTG-----TGTTCaa-tatttgta-------tttttactACACAGATTAATCAATGAAT----CGGAGAAACCTGTTTGAAATAACCGCT--CTTGTCCTCCCCCGAGAAC
i caeSp111.Scaffold567  I 16 I 6
s caePb3.Scfld02_0       3421578 112 +  4147112 -AAATGTAGT-------AAATGCA---------CTATAAATTG-----TGTTcaa-tatttgta-------tttttacTACACAGATTAATCAATGAAT----CGGAGAAACCTGTTTTAAATAACCGCT--CTTGTCCTCCT---AGAAC
i caePb3.Scfld02_0      I 24 I 7
s caeJap4.Scaffold17934   535162 130 +   591668 gaagatttgcaaatttcaaatGCAACCCAAGAGCTATAAAAATAAGGCTGCTCAAATATGAGTACTAAAGTTTTCGGCCACAGAGATTAATCAATGAATCAAGCGGATAAACCTGTTTGAAATAATCGCT---------------------
i caeJap4.Scaffold17934 C 0 C 0

a score=-9335.000000
s ce10.chrX              5138299 51 + 17718866 -CTAGAGGGC-T------------TCGATTTATTTCC---AATCTAAATTTTTGAAAATTTATTTTCC
s caeRem4.Crem_Contig0   1968613 26 -  4500979 -TTGAAATTCAT------------TCAACAGATTTTT---AG--------------------------
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold567     20548 28 +   141584 -TTGAGAAGT-T------------tcgattgaatttcaatag--------------------------
i caeSp111.Scaffold567  I 6 C 0
s caePb3.Scfld02_0       3421697 25 +  4147112 -TTGAGAGGT-T------------TCTATCGAATTTC---Gg--------------------------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   535292 32 +   591668 GGTGGTGGTC-TAGCGCCAAAAAATTAACGCAT-----------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10471590 39 + 21540570 I

a score=-2199.000000
s ce10.chrX              5138350 458 + 17718866  
s cb4.chrX              10471629 437 + 21540570  
i cb4.chrX              I 39 I 5
s caeRem4.Crem_Contig0   1968639 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold567     20576 452 +   141584  
i caeSp111.Scaffold567  C 0 I 9
s caePb3.Scfld02_0       3421722 436 +  4147112  
i caePb3.Scfld02_0      C 0 I 140
s caeJap4.Scaffold17934   535324 448 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-8559.000000
s ce10.chrX              5138808 42 + 17718866 ----GTAGTTACTTTTG--TTGTACTGAACTGA-----------------GTTTTGTTTTTTTTT
s cb4.chrX              10472071 23 + 21540570 ----GTAGTtatc--------------------------------------tttcgttttttttc
i cb4.chrX              I 5 I 10
s caeRem4.Crem_Contig0   1969099 23 -  4500979 ----GCAGTTATC--------------------------------------TCTCAGTTCCCTTC
i caeRem4.Crem_Contig0  I 5 I 77
s caeSp111.Scaffold567     21037 19 +   141584 --------gtAAC--------------------------------------ACTCATATCGTTTC
i caeSp111.Scaffold567  I 9 I 33
s caeJap4.Scaffold17934   535772 65 +   591668 TTTTAGAGTTCGTTCTTGCTTGCAACGAAAAGAAAAGTAAATGATAGAAGGTTTGATCTATCGTC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3422158 140 +  4147112 I

a score=-7968.000000
s ce10.chrX              5138850 67 + 17718866 TAAACTTCTCAAAACCTG---TGGTCTAACCATTGTTTCTTATTT-----------TTTGTAACAAAATGTTCATGTTAAC---
s cb4.chrX              10472104 61 + 21540570 caaaaaaattatgattcg---AGGCataaatgaaaatgtttattg-----------ttTGATACTAAA---TCAT---AAT---
i cb4.chrX              I 10 I 6
s caeSp111.Scaffold567     21089 53 +   141584 ---------TATAGTtcatttgtgttcaattgaa-----ttactt-----------tttcatttttga---acatgtcaat---
i caeSp111.Scaffold567  I 33 C 0
s caeJap4.Scaffold17934   535837 60 +   591668 ---------TATTGGCTG-------CTAATTGAT-----TTACTTCTATAACTGGCTTTTTGCCAGAA---TTAGGACATTAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3422158 140 +  4147112 I
e caeRem4.Crem_Contig0   1969122 77 -  4500979 I

a score=-7461.000000
s ce10.chrX              5138917 33 + 17718866 GATCATTACTATTTATCACTGATTAAACTTCGT
s cb4.chrX              10472171 25 + 21540570 ACTTGTTATGA------ACCcataaaa--tggt
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1969199 21 -  4500979 ------TATGATT----GCCATTCGAA--TCat
i caeRem4.Crem_Contig0  I 77 I 6
s caeSp111.Scaffold567     21142 10 +   141584 -tttattattt----------------------
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   535897 33 +   591668 ATTGAATATGTATATTATCTAATTAAAGTTCAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3422158 140 +  4147112 I

a score=119156.000000
s ce10.chrX              5138950 191 + 17718866 --------------TTTTTTCAGAACCGGGTCTTTTAAACCTGGCTGCAATGTTCCAAGCTGGTGCCGACATGAGCGACACCAGCGGGGACGAGGATGAAACTGTCCCCGCACGAGTTGGACAGGCTGCTGGAAGAACCGATGACTCGGAAGTTGACAATGATGAGGGGAACAATTT-TTTTAGGGTGAG-TTGGAATTTGTTCTAT-
s cb4.chrX              10472196 187 + 21540570 --------------ttttttcagaaccggGTCTTATAAACCTGAGAGCAATGTTCCAAGCTGGTGACGAGATGAGCGACGCCAGTGGGGATGAGGATGATGTGATTCCGGCACGAGTTGGACAAGCAGTCGGCAGAACTAACGACTCTGaagttgaaaatgatgaagggaataattt-tttcagagtgagtc-----tttgttaatt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1969226 186 -  4500979 --------------tattttcagaaccggGTCTTCTAAACCTGGCAGCAATGTTCCAAGCTGGTGCCGACATGAGCGACACCAGCGGGGACGAAGATGAGGTGGTCCCCGCCAGAGTTGGTCAAGCAGTCGGTCGAACCAACGAATCTGAAGTTGATAATGAAGAGGGAAACAACTT-TTTCCGAGTGAG-C-----TCTATTGTTT-
i caeRem4.Crem_Contig0  I 6 I 21
s caeSp111.Scaffold567     21152 183 +   141584 --------------tgttttcagaaccgGGTCTTCTAAACCTCGCAGCAATGTTTCAAGCAGG---CGATATGAGTGATACTAGTGGAGACGAAGACGAGGTGCTTCCAGCCAGAGTTGGACAAGCTGTTGGCAGAACTAATGATTCAGAtaatgagaatgaagaagggAATAACTT-CTTCAGAGTGGG-T-----AACATTGCCA-
i caeSp111.Scaffold567  C 0 I 5
s caePb3.Scfld02_0       3422298 176 +  4147112 --------------TTTTAACAGAACCGGGTCTCATCAACCTTTCGACAATGTTCCAAGGCGG---TGATATCAGCGACAACAGCGGAGACGAGGATGATGTTGTTCCAGCAAGAGTCGGTCAAGCTATGGGAAGAACCAATGAATCTGAGGTGGACAACGAGGAAGG---CAACTT-CTTCCGGGTGAG-C---------TTCCTc-
i caePb3.Scfld02_0      I 140 I 13
s caeJap4.Scaffold17934   535930 201 +   591668 TTATAAGGTATGAACAGTTTCAGAACAAGGCTTGGTGAACCTAACAACCATGTTTCAAGCCGGCACGGAATTAAGTGACACCAGTGGAGATGAAGAAGAAGTCATTCCAGCTAGAGTTGGGCAAGCCTTGGGAAGATCCAATGATTCCGACACTGAAAATGAAGAAGG----AACTTACTTTAAAGTTTG-T--AAAAATGTTATCTC
i caeJap4.Scaffold17934 C 0 C 0

a score=-2025.000000
s ce10.chrX              5139141 19 + 17718866 AATGGTAAAAATGCCCTTA
s cb4.chrX              10472383  5 + 21540570 --------------tttca
i cb4.chrX              C 0 I 14
s caeSp111.Scaffold567     21340 13 +   141584 ------AGAGGTAATATCA
i caeSp111.Scaffold567  I 5 I 1
s caePb3.Scfld02_0       3422487 13 +  4147112 ------gaagacaactttt
i caePb3.Scfld02_0      I 13 I 1
s caeJap4.Scaffold17934   536131 19 +   591668 AACAACCAAAACTgtttcg
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1969412 21 -  4500979 I

a score=69803.000000
s ce10.chrX              5139160 113 + 17718866 ATTTTCAGTTCCAAAGAGCGGCTCCTGTCTACCCAAA---AAATATGATCAATCATAATTTAGATGGCGCAGCAA---CTA---CTGGAATGCGTAGAACTACTAGTTCAATTGCGTGAGTC
s cb4.chrX              10472402 113 + 21540570 AGTTTTAGTTCCAAAGAGCTGCACCAGTTTATCCCAA---AAATATGATCAACCACAATCTCGACGG---AGCGGGATCTA---CGGGAATGCGTCGAACAACCAGCTCGATCGCGTATGTT
i cb4.chrX              I 14 I 9
s caeRem4.Crem_Contig0   1969433 110 -  4500979 ATTTACAGTTCCAGCGGGCCGCTCCTGTCTATCCGAA---GCATATGATCAATCACAACTTGGATGG---AACTA---CGG---CAGGAATGCGACGAACTACCAGCTCGATCGCGTTTGTT
i caeRem4.Crem_Contig0  I 21 I 10
s caeSp111.Scaffold567     21354 110 +   141584 GGTTTCAGTTCCAGAGAGCAGCACCAGTTTATCCGAA---GAATATGATCAATCACAATTTGGATGG---AACGA---CTG---CTGGAATGCGTAGAACGACGAGCTCCATTGCGTAAGTC
i caeSp111.Scaffold567  I 1 I 5
s caePb3.Scfld02_0       3422501 101 +  4147112 ttttccattttcagagag------CTGTGTATCCGAA---GCATATGATCAACCATAACCTCGATGG------GG---CTG---CTGGACTGCGTCGGACGACCAGCTCTATAGCGtaagtt
i caePb3.Scfld02_0      I 1 I 26
s caeJap4.Scaffold17934   536150 116 +   591668 ttttatttttccagaGAGCAATGCCAGTATATCCAAAATTGATAATGAACAACCACAATAACCATGA---AGCGG---CGGCACCAGGAATGCGAAGAActaccagttctattgcgTCAGTT
i caeJap4.Scaffold17934 C 0 C 0

a score=-5800.000000
s ce10.chrX              5139273 30 + 17718866 ------CTGAAAACTCAAAACG-----ACC---TTTACTTTAGA
s cb4.chrX              10472524 19 + 21540570 ------TCGCACACTTTATAtg-----ttc--------------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1969553 19 -  4500979 ------TATAACACTCAATGTA-----TTC--------------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold567     21469 22 +   141584 ------TCTCATAATCAATgag-----ttctga-----------
i caeSp111.Scaffold567  I 5 C 0
s caeJap4.Scaffold17934   536266 29 +   591668 CCAGTATTTTA-ATCCAATaggattttttc--------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3422602 26 +  4147112 I

a score=55862.000000
s ce10.chrX              5139303 121 + 17718866 ATAAAAAATTT---------------TTCAGAAGGATCTCAATGGCTATTCGTCGTTCGCTGCGATTGCCAAGACGTGCTGAAACTAGAATGGCTGCTCGAGAA---GAACAAGTTTTGGTAGAACCAATTGTAAGTTT
s cb4.chrX              10472543 117 + 21540570 --ataaaat-----------------ttcaggcGAATTTCCATGGCCATTCGTCGATCGCTTCGTCTTCCACGACGTTCAGAGGCACGTATGGCACCGAGAGAA---GAGCAGATTGTAATTGAAAGACCAGTAAGTTT
i cb4.chrX              C 0 I 1643
s caeRem4.Crem_Contig0   1969572 117 -  4500979 --ATAaagt-----------------ttcagaagaatttcTATGGCCATTCGTCGATCACTACGTTTGCCACGTCGTTCTGAAGCAAGGATGGCCGCTAGAGAG---GAACAGATTTTGATTGAGACTGTGGTGAGTTT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     21491 124 +   141584 aagaaaaattcaaacat---------tttaGAAGAATTTCAATGGCTATTCGTCGCTCGCTTCGCCTTCCGAGACGTTCTGAAGCAAGAATGGCTGCTCGTGAA---GAAGTTATTG---TTGAAAAACCGGTGAGTGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3422628 130 +  4147112 ATTAAAAATGTGATGATCGACTAACGTTCAGGCGAATTTCTTTGGCCATTCGTCGCTCACTTCGCCTCCCAAGACGTTCTGAAGCAAGGATG---GCTCGTGAA---GACATGATTT---TGGAGAGATTCATGGATGT
i caePb3.Scfld02_0      I 26 I 6
s caeJap4.Scaffold17934   536295 111 +   591668 ----------------------attattcaGGCGGATTTCCATGGCGATTCGCCGGTCACTTCGTCTTCCAAGACGCTCCGAAGCTCGGATG---GCAAGAGAAATGGCGGAGATTT---CAGAAGTAAGTTGGAATGT
i caeJap4.Scaffold17934 C 0 C 0

a score=-465.000000
s ce10.chrX              5139424 7 + 17718866 TTTAAGA
s caeRem4.Crem_Contig0   1969692 3 -  4500979 TTT----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     21615 5 +   141584 --CTAGA
i caeSp111.Scaffold567  C 0 I 346
s caePb3.Scfld02_0       3422764 7 +  4147112 TCTTACA
i caePb3.Scfld02_0      I 6 I 51
s caeJap4.Scaffold17934   536406 7 +   591668 TTTAAGA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10472660 1643 + 21540570 I

a score=156.000000
s ce10.chrX              5139431 9 + 17718866 AAACTAAAA
s caeJap4.Scaffold17934   536413 9 +   591668 ATGCAGAAA
i caeJap4.Scaffold17934 C 0 I 1222
e caePb3.Scfld02_0       3422771 51 +  4147112 I
e cb4.chrX              10472660 1643 + 21540570 I
e caeSp111.Scaffold567     21620 346 +   141584 I
e caeRem4.Crem_Contig0   1969695 0 -  4500979 C

a score=169.000000
s ce10.chrX              5139440 24 + 17718866 TATGATAATTCT-----ATTTACAATTGA
s caeRem4.Crem_Contig0   1969695 29 -  4500979 TTGGTTCATtctttcagactgaaaattgg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3422771 51 +  4147112 I
e caeJap4.Scaffold17934   536422 1222 +   591668 I
e cb4.chrX              10472660 1643 + 21540570 I
e caeSp111.Scaffold567     21620 346 +   141584 I

a score=-170.000000
s ce10.chrX              5139464 16 + 17718866 GAACAAATTATTCCAA--
s caeRem4.Crem_Contig0   1969724 16 -  4500979 --ggaaGATATACCTCAA
i caeRem4.Crem_Contig0  C 0 I 33
s caePb3.Scfld02_0       3422822 16 +  4147112 GAGGAAGTCATGCTAC--
i caePb3.Scfld02_0      I 51 C 0
e caeJap4.Scaffold17934   536422 1222 +   591668 I
e cb4.chrX              10472660 1643 + 21540570 I
e caeSp111.Scaffold567     21620 346 +   141584 I

a score=-490.000000
s ce10.chrX              5139480 40 + 17718866 CTTAAACTGAACAATTCGCAAAAGCATTTAGACAAATACA
s caePb3.Scfld02_0       3422838 20 +  4147112 TTTGA-------------------CAGTTAGG-GGATACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   536422 1222 +   591668 I
e cb4.chrX              10472660 1643 + 21540570 I
e caeSp111.Scaffold567     21620 346 +   141584 I
e caeRem4.Crem_Contig0   1969740 33 -  4500979 I

a score=-34177.000000
s ce10.chrX              5139520 549 + 17718866  
s caeRem4.Crem_Contig0   1969773 232 -  4500979  
i caeRem4.Crem_Contig0  I 33 C 0
s caePb3.Scfld02_0       3422858 635 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   536422 1222 +   591668 I
e cb4.chrX              10472660 1643 + 21540570 I
e caeSp111.Scaffold567     21620 346 +   141584 I

a score=-9960.000000
s ce10.chrX              5140069 60 + 17718866 -----ataaaatactttattttataaattaattatGAGCTT-------------------------------AACAAACAGATTACAATGAA-AATT
s cb4.chrX              10474303 45 + 21540570 -----ATAAATGACTTTGCAC--CAAA---------------------------------------------ACTAATTATAATATtacaaacattt
i cb4.chrX              I 1643 C 0
s caeRem4.Crem_Contig0   1970005 13 -  4500979 -----------------------------------------------------------------------------------TATTTCACA-ACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3423493 94 +  4147112 gactttgaaaTGTTCACGTAT--CAAACTCACTacaaatcatgaaaaaatatgttaaaTAGCATTGCACTCGAACAATTAAAACATTACACA-CTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   536422 1222 +   591668 I
e caeSp111.Scaffold567     21620 346 +   141584 I

a score=-5440.000000
s ce10.chrX              5140129 69 + 17718866 CAAAAAGATC-CCGATGAC---------CCT----CATTACACCACACAGAATATTGATATTCGGCCTCTAG---TGTTCCTTTCA
s cb4.chrX              10474348 65 + 21540570 caaaaagaaacccAATGAA---------CCGGCGAGATTACACAAACACACGCAAAA-----CGGACCCTCT---TTTCTCT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1970018 74 -  4500979 GAAAAAGATA-TCAATGAAT--------CCATCCACATTACACTATTAGAATCAAAAGTGTTCGGTCATTCG---CGTTCATAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3423587 83 +  4147112 CAAAAAGA---CCAATGGACCTGAAGGACCTCTAGTATTACACTAATAATCCCTTTGATATTCATTCTCTCTTCCCGTTCATTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   537644 53 +   591668 CAAAAGAAGA-ACGTTCAC---------CCG----CATTACACCCTC-----------TACGCGGCACCCAG---CGTTCA-----
i caeJap4.Scaffold17934 I 1222 C 0
e caeSp111.Scaffold567     21620 346 +   141584 I

a score=37901.000000
s ce10.chrX              5140198 211 + 17718866 TTTAACGAG--------ATATACATACAAACAACAAAGACGCAGACAACCGGGGGAAAATTCATGAGGGGGAA-CCTC---------------GGT----TGCGTC---GTAGTGGCGTGCACA--ACTACGGACTATTGACAGCTGCGAGAGGGAGAAAGA--GTG---GGCACATACTAGAGCCCA-ACACCCCCAC---------CCCCCCCC----CCCCCCCCTCTTCCTACTGAGCACCCAACTGCTCACCATTGAA
s cb4.chrX              10474413 194 + 21540570 -----------------CTACACCCGTTGAAAACAAAGACGCAGACGC---ATAAAAATTTCAT--GGGCGAA-CCACCACAAATTGCGTAGCGGCGGAGCGCACCCCGTCCA----------CCCAACGCGGACTATTGACAGCTGTGAAACGGGAGAAAGCTCCACACCGCGTGAAGTAGTGCCCA-AAGATCTCCT---------------CA----CCCGTTTCTCT----------------ACTGCTCACCATTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1970092 213 -  4500979 TTCAACGAA--------ATATTCAAGTAAACAGCACAGACGCAGACAC---ACAAATTATTCAT---GGTGAA-CCTC------------AGCGGTCGGTTGCGTCTTATTCGTGGCGTGAGCCCCACTGCGGACTATTGACAGCTgcgaggaaaagaaaag--acgaAATACGCGTACTAGTGCCCA-ACGCCCCGCTTTCGTCCGCATAGCGCA----CCCATTTCCCA----------------ACAACACACCATTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     21966 192 +   141584 TTCAATGGA--------ATATTCACGTAAACAACAAAGACGCAGACAC--TGAAAGTAATTCAT---GAGGAA-CCTC------------GGCGGT----TGCGTT--AGCAGTGGCGTGAGCAAAACTGCGGACTATTGACAGCTGT----GAGAAGAGAA--------TACGCGTAC--ACCCCTCGACGACTCTCC---------GCATCGCGCACCCCCCGTCGCCT----------------ACTGCACACCATTGAA
i caeSp111.Scaffold567  I 346 C 0
s caePb3.Scfld02_0       3423670 188 +  4147112 TTCACCGAG--------ATATGCATATAAACAACAAAGACGCAGA-GT--GAGGAGTAATTCAT---GGCGAACCCTT------------AGCGGT----TGCGTC---GTAGTGGCGTGAGCA-----GCGGACTATTGACAGCTGGGAAAGAGAGGGGAA--------TACGCGTACTAGTGCCCACACGCGGCTCC---------GCAACGCA----CCACATCGCCT----------------ACTACCCACCATTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   537697 172 +   591668 ----ATGAGAAAGCTATAGATTTGCGTGAGCAATGGACACGCAGACAT----AACGGAACTCAT----GAGAG-----------------CACGGT----TGCGTC---GTAGTGGCGTGAGCAGCACTGCGGACTATTGACAGCTGCGAG-------------------ACCGCGCTTCAGTGCCCACACCCAGCCAG---------CCACAGCC----CCCTCTCTTCC-----------------------ACCATTGAA
i caeJap4.Scaffold17934 C 0 I 35

a score=488.000000
s ce10.chrX              5140409 36 + 17718866 ACGGC--CGCACAAATAGCCTTCTCCGTCAGGCAAGCG
s cb4.chrX              10474607 29 + 21540570 ACGCT---GCATAAATAGCCAG------AGCGCACCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1970305 35 -  4500979 ACGTTGCGGCACAAATAGCCAGCT---TCGGGCACCCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22158 32 +   141584 ACGTTGAAGCGCGGCCAGTCTC------GGGGCACCCG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3423858 24 +  4147112 ACATT-----GCGGCTTGCC---------AGGCACCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   537869 35 +   591668 I

a score=61909.000000
s ce10.chrX              5140445 165 + 17718866 TTGTCCT---TTTTCCGCTTCTAAAGAGAGAAAGAG--CTCAATTTGTCAATAGATGGAACAAAGGCTTCA---CGTTTTGGAGCATTGAATTGCACCAAAA---CTTT---GCGGTAGAAGTAGCTGGTT----------TTACGCGAG-CGTCGGTGTT----TGGTGAGTAA------------TATAATAAGTGTCTAAACT
s cb4.chrX              10474636 164 + 21540570 TTTGTCCCCGTCTTCCGCTCTTCT-----ACGCGAGCCCTCATTTTGTCAATAAATGGAACAAAGGCTACA---CGTTTTGGAGCATTGAATTGCACCAAAA---CTTATTTCTTTCAC-AATAACTAGCT----------T---GTAGA-GACCGTTTTT----CGGTGAGTTA------------TATAATAGATTTTTCGACT
i cb4.chrX              C 0 I 108
s caeRem4.Crem_Contig0   1970340 154 -  4500979 TTGTTC----TTTTCCCCTCCGCTC---AATACAAG--CTTATTTTGTCAATAGATGGAACAAAGACTACA---CGTTTTGAAGCATTGAATTGCACC--AA---CTTATTCAAACGACGAGTAGCTAGTT----------TTCCGTAGACGACCGTTTTT----CGGTGAGTTG------------TAAAAAAGAT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22190 166 +   141584 TTGTCC----TTTTCCGCTCA--------ATACGAG--CTCATTTTGTCAATAGATGGAACAAAGGCTACA---CGTTTCGCAGCATTGAATTGCaccaaaaagtttttctcgCAAGACGTATAGCTAGTT----------CTCTGTATT-TGGCGTCTTTCTTCCGGTAAGTTG------------TATGTTAGGtttgacaaaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3423882 156 +  4147112 TTGTCCT---TTTTCCGCTCA--------CAACGAG--CTCATTTTGTCAATAGATGGAACAAAGGCTACA---CGTTTTGGAGCATTGAATTgcaccaaaa---ctttttgacgaGACGTATAGCTAGTT----------T------TG-CGGCGTTTTTCT--CGGTGAGTTG------------CATAATAGGCTTTAGGAAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   537904 170 +   591668 -------TTGTCTTCCTTCTC--------------G--CTTA-TTTGTCAATAAATGGAACAAAGCCTTCACGTCGTTTTGGAGCATTGAATTGCAC---GA---TTTC---TCGCCACGAGTAGCTAGCTAGTTCTTGGCTTTTTCACG-cgtctttttttt--cggtgAGTTGGAAATTTGAGCACACATTTAATTTataaatt
i caeJap4.Scaffold17934 I 35 C 0

a score=-21656.000000
s ce10.chrX              5140610  69 + 17718866 TGACACCAAT------------AAATAATGGAAACCACTTACGATTTGTATTATGAACATACATTTCT---ATTGA-------------TTTTTGAA-----------
s caeRem4.Crem_Contig0   1970494  32 -  4500979 ---------TC---------ACAGAAAACGG---T--------------------------TCTTTCGAGAACTGA------------------CAC-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22356  62 +   141584 ---aacatttc---------a-aaaaagtga---ttatTGAGGTTTTA------GAACAAATCTTATTAATACTAG-------------TGAACAAA-----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3424039  77 +  4147112 TAGTACTACTC---------A-AGAAAACAAGACTAAGCAAAGGTTCA------taccaaagttttcaaaaattaag----cTTAAAATTTATCCAA-----------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17934   538074 100 +   591668 tgacattttttcaatttacaa-AGAGAATGaga-taataaaaaatgta------aaaaaaattcttcaaataacgaatgttttgaaaagttgtctatttttttctgca
i caeJap4.Scaffold17934 C 0 I 42
e cb4.chrX              10474800 108 + 21540570 I

a score=-2512.000000
s ce10.chrX              5140679 14 + 17718866 CCAAAACTATTATT------------
s caeRem4.Crem_Contig0   1970526 26 -  4500979 ATTAAATTATTACGTTTTGAATAcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22418 15 +   141584 GTCaaaataaacagt-----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3424116 15 +  4147112 ATCAAAGTATCTCGC-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   538174 42 +   591668 I
e cb4.chrX              10474800 108 + 21540570 I

a score=-6610.000000
s ce10.chrX              5140693 35 + 17718866 TTTGAGAATAA------------AAACGTATTAAAAATGTGGTATTC
s cb4.chrX              10474908 30 + 21540570 gtcaaaaataa--------aaccaaaatcatgaaaaat---------
i cb4.chrX              I 108 C 0
s caeRem4.Crem_Contig0   1970552 43 -  4500979 -tcgaaaattgagaagtttaaacaaaattaaatcaaat---ttacac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     22433 20 +   141584 tttgaatttta------------aaaattaaa---------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3424131 22 +  4147112 AACAAATATTA------------AGAATTCTAAC-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   538174 42 +   591668 I

a score=231226.000000
s ce10.chrX              5140728  799 + 17718866  
s cb4.chrX              10474938 1011 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1970595  870 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 91
s caeSp111.Scaffold567     22453  799 +   141584  
i caeSp111.Scaffold567  C 0 I 132
s caePb3.Scfld02_0       3424153  849 +  4147112  
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   538216  847 +   591668  
i caeJap4.Scaffold17934 I 42 I 100

a score=-22849.000000
s ce10.chrX              5141527 413 + 17718866 AGTCGAAAAATGTGGCACTTTTTTAAAAACGAATTTAACGGGATATACGGTTGTCTCAAACCtaaaaatataaattaaatttttttaatGCGTTCATGCAAGTACGCTTTTGTATGCCTAGTCTAGTCCTTTGCACATTTTTGGAAAACTATTAACATGCTTTTTATTTGGATTTTTGGCGTAGAGAAACAAAATTTCTACACCCGCTAATAAAATTTCCACTCAGACTTTTCA---AAAAGAAACTAGAAAATAATACATTGTATAAA-TTTCGG---AAGGGAAAAT---AAGTTTATCGAAAGTATTTGAGTTTC--TCAAAA---GGAGAAATAAAGTTTGCAAACTTCATGTTTTCCTTTTTTCAAATTTGAATTACTTTTTACCTAAATTTATCGTAACTTTGCAAATATTTTTTTCACACG
s cb4.chrX              10475949 311 + 21540570 --------GATACAG-----------------ATTTAGAAGGT---------------------AGGACGTAGTTGATACACTGTTAAT---------CGAG-------------GAGTACTGTAG-----GAAACATTTCTTGAAGTCTAGAATCCACCTT-------------------CAAAGCAAAATAAATTGTGACCATCCAACTTTATCATCAATTCCCATTTTTGATTcataagaattttcgaaac----tagtttttga--tttcaggctaccctgaaattgaaagtttaaaaGTAGTCTTCTTGGTTCTTTCAAGATATGTAGAAATTTAGTCAACTGAATATATG----------------TTCGATATAATGTTATC-TACATTTCT-GTAg-ttcgcaaaattttgataaacaaa
i cb4.chrX              C 0 I 101
s caePb3.Scfld02_0       3425015 194 +  4147112 agtc--aTAATACCGTAACATCT-------GTATCAAAATGACTA----------------ACAAGAGCGTGGTTAAAAGTTTTCtaat---------tga----------------------tag-----------tttttttgag--------------------------------------------------------attttactGTATCTACTTTGGTTACttttca---ataagaa---------------aatgGATGAAGTTTCAG--TACTGTAAGAT----------------ATCTTTACAGTTC-----------AGAGGAATTTGA----------------------------------GAAACAGTTTTCTC----------------------AGATTTAAA--------
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   539063 100 +   591668 I
e caeSp111.Scaffold567     23252 132 +   141584 I
e caeRem4.Crem_Contig0   1971465  91 -  4500979 I

a score=-2048.000000
s ce10.chrX              5141940 148 + 17718866 TCAGTTTGAAGGCACACGCTGTTTTTCTGAGTGAGTCTCGCCACGATTTCAGTCATAGTAATTGCTACTTGTGTCACGTTTTTTTTTTCACGTTCTGATGCAGTTAGTAAAAATTTTACTTATTTACTTGTAGCTTTATTTTTTGAGA
s caePb3.Scfld02_0       3425209  46 +  4147112 ---GTTTGGA-----------------------------------------------------------------------------------------------AATGAGAATAGTTCTAATGTTCTCgtacatttgtttttt----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   539063 100 +   591668 I
e cb4.chrX              10476260 101 + 21540570 I
e caeSp111.Scaffold567     23252 132 +   141584 I
e caeRem4.Crem_Contig0   1971465  91 -  4500979 I

a score=-2214.000000
s ce10.chrX              5142088 44 + 17718866 ACACAAGGTTAAAAAAAATTGTCGTCTATTTTAAACTTGATCCC
s cb4.chrX              10476361 39 + 21540570 Atataagttt--aaaaattcattgtCTTTCGGCTCTTCAAT---
i cb4.chrX              I 101 C 0
s caePb3.Scfld02_0       3425255  8 +  4147112 ------------------tcattgtc------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   539063 100 +   591668 I
e caeSp111.Scaffold567     23252 132 +   141584 I
e caeRem4.Crem_Contig0   1971465 91 -  4500979 I

a score=1962.000000
s ce10.chrX              5142132 44 + 17718866 AaacaacaacaacaacaacaacaaAAGAATCCATCAAAATTTCC
s cb4.chrX              10476400 32 + 21540570 -AAtaccaacaacaacaacaacaacgcGA-----------Ccac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1971556 29 -  4500979 aaacaaaaacaacaacaacaacaat---------------ccTG
i caeRem4.Crem_Contig0  I 91 C 0
s caeSp111.Scaffold567     23384 22 +   141584 ------aaacaacaaaaacaaaaa----------------tctg
i caeSp111.Scaffold567  I 132 C 0
s caePb3.Scfld02_0       3425263 34 +  4147112 -----aacaaaacaaaaacaataacgAGA-----AAACCCTCCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   539063 100 +   591668 I

a score=296186.000000
s ce10.chrX              5142176 485 + 17718866  
s cb4.chrX              10476432 500 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1971585 475 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     23406 474 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3425297 470 +  4147112  
i caePb3.Scfld02_0      C 0 I 49
s caeJap4.Scaffold17934   539163 680 +   591668  
i caeJap4.Scaffold17934 I 100 C 0

a score=-4718.000000
s ce10.chrX              5142661 38 + 17718866 TGCAAGCTGA-TTTCTTAGAGACTG-TGTGTTGTTTGCTA------
s cb4.chrX              10476932 39 + 21540570 CGGCGGGAAA-CTTTGTTGGGATCGAGAGATTGTGTGAGT------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   1972060 34 -  4500979 cgGCGGGAAATCTTTGGTGG------CGGATTGTGTGATT------
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold567     23880 25 +   141584 ----ggGAAA-TATCG----------CGGATTGTCTGATT------
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   539843 37 +   591668 ----TGAAAA-ATCGGTCGGCG----AAAATTATTTGCTGCCAGct
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3425767 49 +  4147112 I

a score=127679.000000
s ce10.chrX              5142699 239 + 17718866 TTATGAACGCAAAAAATAT--------ATGAAAACAATAAGAA---------------------------GG---AAGTG-aaaaa-----------taaa--ttaaa------aattattttCCCACACCAATTCCACAAAATTTTTCAGGCAAAAAACAATCGCCTCAGATCCTGGCAGATGAAGGTGGAGTGCTCAGTAATTTTGATTTGAAAGAAGTCGGATCTGTGAAATTGATTCGGCTTCTGCTGATTATTGAGAGACTTCGTCCGGAAATTGTGTACGCACCAGTGAGT
s cb4.chrX              10476977 241 + 21540570 -TTCGAAAGCAACGCACataataacacaaaaacaagaaaggaAGTGGCTGT------------GTGTGACAGTCTGGCTG-AAAAAACTTAA-----CGag--tgaaa-----------------------------------tttttcaggaaaaaaacaatCGCCACAAATCCTAGCAGATGAGGGTGGTGTGCTCAATAATTTCGATTTGAAGGAAGTGGGTTCAGTTAAACTTATTCGTCTTCTACTGATCATCGAGAGACTCCGTCCAGAAATTGTGTACGCACCGGTAAGT
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1972099 234 -  4500979 -----AAAGCAAAGCATAT--------GAAAACAAGATATGAA---------------------TTTGACAG--TGActgcaaaaaaagcaa-----aaaa--ttaaaaattttgattgattt--------------------tttttcaggcaaaaagCAATCGCCACAAATCCTAGCTGACGAGGGAGGTGTTCTcaacaattttgatttgaaggAGGTTGGATCTGTCAAGTTGAttcgtcttcttctgattATTGAGAGACTCCGTCCAGAAATCGTCTACGCACCGGTAAGT
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold567     23905 241 +   141584 TTTCCAAAgcaaattatta--------aaaaaacaagggTAGAGTTGAT--------------ATTTAtcag---aaatg-agaaatagtgttttctgaaa--tgaaa--------ttcttgt--------------------tttctcagGAAAAAAGCAGTCGCCACAAATCCTAGCAGATGAAGGAGGCGTTCTCAataatttcgatttgaagGAAGTCGGTTCTGTAAAACTGATTCGTCTCTTGCTCATTATTGAGAGGCTCCGTCCGGAAATTGTGTACGCCCCGGTAAGT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3425816 240 +  4147112 ttataaaaaca-------a--------aaaacaaagaagtggATTTGACATAAGCTCCGGGAAATCTAGGAG---AATTG-AGAGaagg--------aaaatctgaaa--------ttcttat--------------------tt--tcaggcaaaaagCAATCGCCACAAATCCTAGCAGACGAAGGAGGCGTTCTCAACAATTTCGATCTCAAAGAAGTCGGATCAGTTAAACTGATCCGTCTCTTGCTCATCATTGAAAGACTCCGTCCAGAGATTGTCTACGCACCAGTGAGt
i caePb3.Scfld02_0      I 49 C 0
s caeJap4.Scaffold17934   539880 247 +   591668 ttctcaacaaaaaaaatga------gcaaaaaaaagaaaagaa----------------aagaaaataaatg---aaatg-aaatgaagt-------caaa--ctaaa----aaaacagttttttaaaatca-----------ctTTGCAGGCAAAAAACAATCGCCGCAAATCCTTGCCGACGAAGGTGCTGTGCTCAACAATTTCGACTTGAGTGAGATCGGTTCCGTCAGATTGATCCGTCTTTTGCTGATTATTGAGAGACTTCGACCTGAAATTGTGTATGCACCGGTAAGC
i caeJap4.Scaffold17934 C 0 C 0

a score=1820.000000
s ce10.chrX              5142938 2 + 17718866 TT
s cb4.chrX              10477218 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1972333 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 I 41
s caePb3.Scfld02_0       3426056 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   540127 2 +   591668 TT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     24146 0 +   141584 C

a score=-95.000000
s ce10.chrX              5142940 11 + 17718866 TGAATATTTTG
s cb4.chrX              10477220  5 + 21540570 ------TATTG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3426058  8 +  4147112 ---atttctca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   540129 11 +   591668 TTATCTTTTTG
i caeJap4.Scaffold17934 C 0 I 91
e caeSp111.Scaffold567     24146  0 +   141584 C
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=-7859.000000
s ce10.chrX              5142951 164 + 17718866 Gaat---attttttaaaattataataaaGTGAATAAAAAACAAAATCGATGTTCTAAAAAATTGCAGTATTAAGCTATAAAAATCAAAAAATAGCGGCTAAT--------------------GCAAATTAGATTTATAATAAAAAGTAAGCATCGTGTTTTGGTAACTTGTAAATTTTCTGAAAATT
s cb4.chrX              10477225 150 + 21540570 GAGACTGAATTTCAA---------------TAGTGCCAgtcagtcatttttttttcaa----------ctaaaaacgTCAATCCTCAAAAGCAGTTGTAAATTGTCATGCAGGCAGTATCAAGTGCAGTAAATCTGTTATAGAAG--------CGCTTCCT----ACCTTTAAACTTTgtgcaaatt
i cb4.chrX              C 0 I 44
s caePb3.Scfld02_0       3426066  87 +  4147112 gaaa---actttcaa--------acaaatttaACAGAATgtagatttgtttttttca------------tag-------gcTCTTAGAAACCAGTTGATAAT----------------------------------------------------------------------ATCCCTCCGCGAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   540140  91 +   591668 I
e caeSp111.Scaffold567     24146   0 +   141584 C
e caeRem4.Crem_Contig0   1972335  41 -  4500979 I

a score=-17.000000
s ce10.chrX              5143115 33 + 17718866 GGAATTTTTAAA-ATTTT--AACATTTATGAGAGAA
s caePb3.Scfld02_0       3426153 36 +  4147112 GGTTCgtttaattatttttggaaatgtacGGGACCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   540140 91 +   591668 I
e cb4.chrX              10477375 44 + 21540570 I
e caeSp111.Scaffold567     24146  0 +   141584 C
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=126.000000
s ce10.chrX              5143148 22 + 17718866 -TTGCTGCGATttcaaaccttta-
s cb4.chrX              10477419 22 + 21540570 -TTGTCGTGATATCACAACTTTT-
i cb4.chrX              I 44 C 0
s caePb3.Scfld02_0       3426189 23 +  4147112 CAGGTTccgatttc-caattttcg
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold17934   540140 91 +   591668 I
e caeSp111.Scaffold567     24146  0 +   141584 C
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=-283.000000
s ce10.chrX              5143170 10 + 17718866 gaatattcga
s cb4.chrX              10477441  6 + 21540570 TA----TCGG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3426212 33 +  4147112 I
e caeJap4.Scaffold17934   540140 91 +   591668 I
e caeSp111.Scaffold567     24146  0 +   141584 C
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=-2651.000000
s ce10.chrX              5143180 40 + 17718866 atgcaaa------tattt------gaaac----acaattaaaaaataaaagtcg-ta
s cb4.chrX              10477447 57 + 21540570 TTGGAAAATTatatatcttgcatagaagccgagataattagaaCAGGATGGACAATA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   540231 36 +   591668 -------------------acgcagagac-gcgagaaatggcgaccaaaaaacg-ta
i caeJap4.Scaffold17934 I 91 C 0
e caePb3.Scfld02_0       3426212 33 +  4147112 I
e caeSp111.Scaffold567     24146  0 +   141584 C
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=-20898.000000
s ce10.chrX              5143220 123 + 17718866 gaattgttttt-------ttgttgacttccaaatgtatataagatattataggtgaaattaaattttgtaccactttttgactg-------------tatacaaaaattt-ttttttttttttCCTATTTTTCTCCGATTGATA
s cb4.chrX              10477504 106 + 21540570 GAATTTCTATTACATGCTTTTCGGTAATATGAGT-TTGATTGGTTtta-------catttgaatttt---gatcatATTAGCC-----ACGTAGCG-ACTACATTAACTC-ACTTCTTATTTTC--------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3426245 136 +  4147112 taattgttgtt-ttcgCTACGccgttatcaaaatgttgataaCTTCTC-------AAACAAGATTTCCTGAACCGTCTTGGTTGAAGGACATCGCTCAATTCCCGgactcaaatttttatttatccGGGGCTTTCATACTAATC
i caePb3.Scfld02_0      I 33 I 11
s caeJap4.Scaffold17934   540267  34 +   591668 -------------------------gtcccgaacactgGTAAAAGAGC-------TATCTACATAA------------------------------------------------------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     24146   0 +   141584 C
e caeRem4.Crem_Contig0   1972335  41 -  4500979 I

a score=-12553.000000
s ce10.chrX              5143343 41 + 17718866 TTTAC-----AATAAATTATACAAAATTAGAC--------------TTCTAGTAATAATT
s cb4.chrX              10477610 25 + 21540570 ----------AATATCGTTCGCAATGCCAGA---------------CTTT----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     24146 33 +   141584 TTTACAATTTCTTATATCACTTCACACTA-----------------TTGT----------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3426392 43 +  4147112 -------CTTAATAAATAACAGTATACCAGAACCAAAttaatttgtttct----------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17934   540301  1 +   591668 -------------------------------------------------T----------
i caeJap4.Scaffold17934 C 0 C 0
e caeRem4.Crem_Contig0   1972335 41 -  4500979 I

a score=393722.000000
s ce10.chrX              5143384 763 + 17718866  
s cb4.chrX              10477635 772 + 21540570  
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   1972376 670 -  4500979  
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold567     24179 701 +   141584  
i caeSp111.Scaffold567  C 0 I 14
s caePb3.Scfld02_0       3426435 780 +  4147112  
i caePb3.Scfld02_0      C 0 I 252
s caeJap4.Scaffold17934   540302 722 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=224.000000
s ce10.chrX              5144147 20 + 17718866 cacccaa-----attttgacagctt
s caeJap4.Scaffold17934   541024 25 +   591668 CAccaaaagtttatttttatttttt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3427215 252 +  4147112 I
e cb4.chrX              10478407 58 + 21540570 I
e caeSp111.Scaffold567     24880 14 +   141584 I
e caeRem4.Crem_Contig0   1973046  0 -  4500979 C

a score=-10094.000000
s ce10.chrX              5144167 53 + 17718866 atctcagt-----tgccatt-------------tgttttattaaatacttgttaattgaaga----------aatattgtt
s caeRem4.Crem_Contig0   1973046 14 -  4500979 ------------------------------------------------ATATCAGTGAAAGA-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24894 39 +   141584 ATTT-------------ATT-------------Gg--tcattgaaaataaaaccaTAAAAGG--------------TTATT
i caeSp111.Scaffold567  I 14 C 0
s caeJap4.Scaffold17934   541049 80 +   591668 atttaactgaatatgaaatttttgaaaaaggtgggtttttctaaata-ttagCGGTAAAAATTTGTACCACAAATATTAGT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3427215 252 +  4147112 I
e cb4.chrX              10478407 58 + 21540570 I

a score=-63872.000000
s ce10.chrX              5144220 197 + 17718866 tttctagcattattacttagtcat----ctatg------aatatgttcaaaattgcct-----gagttttgactttccaaagtgaagcagtgtagcacaatac------------------------------taaaaagtacggtaTTCAATTCACCACCCCTACACCACACCTGAAAAAGTTTCTATTTCCCTAAC-----------------------GTCTGCAGAATAC--------------------GGTCAACTGTAAA-CATATGTTTGGTGTTCCA----
s cb4.chrX              10478465 194 + 21540570 TTTCTAGTAT-----CCAACTCGT----CTGACCAGTTAAGTATCCTGAGAGTGAACT-----ATTTTTGGAAGTTCCAAGATGAGATAAATTCCTCTAAAGA------------------------------CAAAAATGATGGCATT----------------------ACCAAACAAACGATTCATTTCCGTAAAA------------CTTTTTGACCTTCTTAAAACTAgcgaaatcgaattttgatcGCTGCTTACT------CAAATGTTCT------------
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   1973060  68 -  4500979 ---------------------------------------AGTAATGTAggaatgaatttg---aattctggaaat--------------------------------------------------------------------------------------------------------aatgAATTGCGTCCCTGAA-----------------------TTCGTGAAAATAG-----------------------------------------TTG------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     24933  77 +   141584 -----------------------------TTTGCCGTGAAGAGTCTCAAAACTGACCT-----AATACTCATAGT---------------------------------------------------------------------------------------------------GAGTGGGAAAACTACAATTCTAGA------------------------CCAGAGGGATAC--------------------------------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   541129 250 +   591668 --TTACGCTCTACGGTTGATGTTTTACGTTCTACAGTTGATTTTGTCAaatgcgccctatcgcattgtctgcgtctccacagacCGATAATGGCGTGTGTACCGCcttttgttgtctgcgtatccCTGTTTTTCCAAAAGCCTAGTTTT----------------------GTCTAACCCTCTAACTTCTCTATTGAAagtttttatggtttttttttcctttcaaaacaaaaa--------aagtctGTGCAGGTAGAAATGCAAACCAAAATTTTG--------GCCC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3427215 252 +  4147112 I

a score=210806.000000
s ce10.chrX              5144417 828 + 17718866  
s cb4.chrX              10478659 843 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1973128 811 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25010 782 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3427467 785 +  4147112  
i caePb3.Scfld02_0      I 252 C 0
s caeJap4.Scaffold17934   541379 918 +   591668  
i caeJap4.Scaffold17934 C 0 I 11

a score=-4690.000000
s ce10.chrX              5145245 17 + 17718866 TTCTCAGTCCCGATTTT
s cb4.chrX              10479502 11 + 21540570 -----aatttcc-aaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1973939 14 -  4500979 tt--taattgTT-GTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     25792 16 +   141584 ATATTAAGACTG-tttt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3428252 15 +  4147112 ATCataatcct--tttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   542297 11 +   591668 I

a score=136484.000000
s ce10.chrX              5145262 159 + 17718866 TTCAGATATTGGGGAACTGGCGAGTCTTACGTGTTTCGAATGAATAAAGAAATGGAGCTTCCTGAAATTTACACGTGGGTCGGAAACTCTCCGGATGTTTCGTCCGATAAGTGCCCGCAGTATTTTATGTCAGCTACCGATAAGTCATTTGTGGTGAGT
s cb4.chrX              10479513 159 + 21540570 ttcagatactGGGGAACTGGCGAGTCATACGTGTTCCGTATGAACAAGGAGATGGAATTGCCTGAAATTTACACCTGGGTTGGAAATGCTCCAGATGTGTCCTCTTCCGAGTGCCCACAGTACTTCATGTCGGCTACTGACAAGTCATTTGTGGTGAGT
i cb4.chrX              C 0 I 169
s caeRem4.Crem_Contig0   1973953 159 -  4500979 TTCAGGTACTGGGGAACTGGAGAGTCTTATGTGTTCCGTATGAACAAGGATATGGAACTTCCTGAGATTTACCAATGGGTTGGAAATTCTCCAGATGTCACTTCATCCGATTGCCCACAATATTTCATGTCTGCTACTGATAAATCATTTGTGGTAAGT
i caeRem4.Crem_Contig0  C 0 I 68
s caeSp111.Scaffold567     25808 159 +   141584 tttAGATACTGGGGAACCGGTGAGTCTTACGTGTTCCGAATGAACAAACAAATGGATCTTCCTGAAATATATACGTGGGTCGGAAACTCCCCAGatgtttcttcttccgatTGTCCACAGTATTTCATGTCAGCAACTGACAAATCATTTGTGGTAAGT
i caeSp111.Scaffold567  C 0 I 41
s caePb3.Scfld02_0       3428267 156 +  4147112 tccaggtaCTGGGGAACTGGTGAGTCGTATGTGTTCCGCCTGAATAAGGACATGGAGTTACCGGAAGTTTACACATGGGTTGGAAACACTGCAGATGTAACATCTTCTGACTCCCCACAGTATTTCATGACGGCTACTGATAAGTCGCTTGTGGTA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   542308 159 +   591668 ttcagGTACTGGGGAACTGGAGAGTCGTACGTGTTCAGAATGAACAAGGACTTGGAACTTCCGGAAATTTACCAGTGGGTCGGTAGTGCACCAGATGCCACTCCAGAGACATCACCGCAATATTTTATGGCTGCCACAGAAAAGTCAATAGTGGTGCGT
i caeJap4.Scaffold17934 I 11 C 0

a score=273.000000
s ce10.chrX              5145421 1 + 17718866 T
s caePb3.Scfld02_0       3428423 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   542467 1 +   591668 T
i caeJap4.Scaffold17934 C 0 I 58
e cb4.chrX              10479672 169 + 21540570 I
e caeSp111.Scaffold567     25967 41 +   141584 I
e caeRem4.Crem_Contig0   1974112 68 -  4500979 I

a score=733.000000
s ce10.chrX              5145422 29 + 17718866 GTGGAATGGGGATAAACCGACAGAAATTT
s caePb3.Scfld02_0       3428424 28 +  4147112 GTTGAATTGAG-TAATCTAGAAGAAGTTT
i caePb3.Scfld02_0      C 0 I 147
e caeJap4.Scaffold17934   542468 58 +   591668 I
e cb4.chrX              10479672 169 + 21540570 I
e caeSp111.Scaffold567     25967 41 +   141584 I
e caeRem4.Crem_Contig0   1974112 68 -  4500979 I

a score=0.000000
s ce10.chrX              5145451 637 + 17718866  
e caePb3.Scfld02_0       3428452 147 +  4147112 I
e caeJap4.Scaffold17934   542468  58 +   591668 I
e cb4.chrX              10479672 169 + 21540570 I
e caeSp111.Scaffold567     25967  41 +   141584 I
e caeRem4.Crem_Contig0   1974112  68 -  4500979 I

a score=251.000000
s ce10.chrX              5146088 4 + 17718866 CTGA
s caeSp111.Scaffold567     26008 4 +   141584 ctaa
i caeSp111.Scaffold567  I 41 C 0
e caePb3.Scfld02_0       3428452 147 +  4147112 I
e caeJap4.Scaffold17934   542468 58 +   591668 I
e cb4.chrX              10479672 169 + 21540570 I
e caeRem4.Crem_Contig0   1974112 68 -  4500979 I

a score=273.000000
s ce10.chrX              5146092 1 + 17718866 A
s caeSp111.Scaffold567     26012 1 +   141584 a
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3428599 1 +  4147112 A
i caePb3.Scfld02_0      I 147 C 0
e caeJap4.Scaffold17934   542468 58 +   591668 I
e cb4.chrX              10479672 169 + 21540570 I
e caeRem4.Crem_Contig0   1974112 68 -  4500979 I

a score=183934.000000
s ce10.chrX              5146093 603 + 17718866  
s cb4.chrX              10479841 577 + 21540570  
i cb4.chrX              I 169 I 845
s caeRem4.Crem_Contig0   1974180 623 -  4500979  
i caeRem4.Crem_Contig0  I 68 C 0
s caeSp111.Scaffold567     26013 613 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3428600 617 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   542526 680 +   591668  
i caeJap4.Scaffold17934 I 58 C 0

a score=1285.000000
s ce10.chrX              5146696 17 + 17718866 ctttttaatttaaaatt-
s caeRem4.Crem_Contig0   1974803 13 -  4500979 CTTTGTATT---GAAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26626 14 +   141584 CTTTGTAAT---AAATC-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3429217 13 +  4147112 cTTTGTATT---AAAT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   543206 17 +   591668 atttttaattt-gaattt
i caeJap4.Scaffold17934 C 0 I 172
e cb4.chrX              10480418 845 + 21540570 I

a score=-1218.000000
s ce10.chrX              5146713 4 + 17718866 aaaa-------
s caeRem4.Crem_Contig0   1974816 7 -  4500979 ----ATTTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     26640 4 +   141584 AAGA-------
i caeSp111.Scaffold567  C 0 I 720
e caePb3.Scfld02_0       3429230 0 +  4147112 C
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I

a score=145.000000
s ce10.chrX              5146717 2 + 17718866 tG
s caeRem4.Crem_Contig0   1974823 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 I 610
s caePb3.Scfld02_0       3429230 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I
e caeSp111.Scaffold567     26644 720 +   141584 I

a score=554.000000
s ce10.chrX              5146719 28 + 17718866 TACTATTGTTGGGTCATGCCGATTTTTG
s caePb3.Scfld02_0       3429232 28 +  4147112 TATGGTTCACAAAACAAACCGATTTCTG
i caePb3.Scfld02_0      C 0 I 955
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I
e caeSp111.Scaffold567     26644 720 +   141584 I
e caeRem4.Crem_Contig0   1974825 610 -  4500979 I

a score=0.000000
s ce10.chrX              5146747 1737 + 17718866  
e caePb3.Scfld02_0       3429260  955 +  4147112 I
e caeJap4.Scaffold17934   543223  172 +   591668 I
e cb4.chrX              10480418  845 + 21540570 I
e caeSp111.Scaffold567     26644  720 +   141584 I
e caeRem4.Crem_Contig0   1974825  610 -  4500979 I

a score=838.000000
s ce10.chrX              5148484 86 + 17718866 TTCAGAGGTGTAAATAACTCCATGGACAGCAGAAATAACGAACGTTTATCAAAAAGAGGTTGTCACTTGTTCACTAAAACTTTTAA
s caeRem4.Crem_Contig0   1975435 77 -  4500979 TTCAAATATCAAAGTGACATCATGGAAAATgatagaagaaaatgttgtTCAAAGCACGGTAACCA---------TATaatcttgag
i caeRem4.Crem_Contig0  I 610 C 0
e caePb3.Scfld02_0       3429260 955 +  4147112 I
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I
e caeSp111.Scaffold567     26644 720 +   141584 I

a score=-1375.000000
s ce10.chrX              5148570 14 + 17718866 TTAAATCTTGATAT------
s caeRem4.Crem_Contig0   1975512 17 -  4500979 --aaaaatc-ataTGAGTAT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3430215 14 +  4147112 TTGAAACTT-ATTCA-----
i caePb3.Scfld02_0      I 955 C 0
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I
e caeSp111.Scaffold567     26644 720 +   141584 I

a score=3430.000000
s ce10.chrX              5148584 30 + 17718866 TTTCAGTTTATGCAG--AAGGCGAGCCAGCAT
s caeRem4.Crem_Contig0   1975530 30 -  4500979 TTTCAGC--ACGATCATGTGGAGAGCCTCCAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold567     27364 30 +   141584 TTCCAGCTCACGATA--ACGGAGAACCAGCTG
i caeSp111.Scaffold567  I 720 C 0
s caePb3.Scfld02_0       3430229 30 +  4147112 TTCCAGCAAACGACA--GTGGAGAACCTGCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   543223 172 +   591668 I
e cb4.chrX              10480418 845 + 21540570 I

a score=7260.000000
s ce10.chrX              5148614 56 + 17718866 CCAAGCGACATTGCTCACAACTTTCCGAGAAATCATCGAGATATTCCAAACCATTT
s caeRem4.Crem_Contig0   1975560 56 -  4500979 ACAAGAAACTTTGTCCTCAACCATCTGGAAAGCCGTCCAAGTTTTTCATCCCGTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     27394 50 +   141584 CCAAGCGTCATTGCGCTA------TTCAAAAACCCCCAAAGTTTACAAAGCCTTTC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3430259 50 +  4147112 CCAAGAAATGCTGCGTGC------CGGAAAAGCCATCCAAGTATACGACTCCATTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   543395 53 +   591668 CCAAAAAGCACAGCAAACAGCTTCTGgaaaagcca---aaaaattcaattcccTTT
i caeJap4.Scaffold17934 I 172 C 0
e cb4.chrX              10480418 845 + 21540570 I

a score=19215.000000
s ce10.chrX              5148670 80 + 17718866 AACGGTCAGCTAGAGGAGAAG--------AACAAAGTACAACCAGCGAAA------------CGAAATGCTCCACAAGACAACTTGTCTGCTCAAATATA
s cb4.chrX              10481263 76 + 21540570 AACCATCATCTGAAGCT------------GAGAAGCCAAAAACTGTCAAA------------CGAGTAGCTCCACAAGACAACCTCTCTGCTCAAGTTTA
i cb4.chrX              I 845 C 0
s caeRem4.Crem_Contig0   1975616 80 -  4500979 AACGGTACAACGAAACCAAAG--------GAGAATACTAGACCACCAAAA------------CGGACGGCACCGCAGGACAATTTATCCGCCCAAGTGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     27444 80 +   141584 --------AATGGAACTAATGAAACTGCCGACAAATCGAAGGGTGTTAAG------------AGAAATGCTCCACAGGATGCTCTCTCTGCTCAAGTCTA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3430309 74 +  4147112 --------AATGGAACCAACGATA------ACAAGGCTAAGGCTGAGAAA------------CGTGCTGCTCCACAAGACAGTCTATCTGCTCAGGTCGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   543448 83 +   591668 --------TCTGGAATCAATG---------AGAAGACATAACCACCAAAACAACAAATAAAGCGAAGGGCTTCAAAAGATGAACTATCTGCTCAAATATA
i caeJap4.Scaffold17934 C 0 I 617

a score=-26878.000000
s ce10.chrX              5148750 130 + 17718866 CGTGAGAAA---GCTCGCAGTGTTTTGATA--------TTTTGGACTGTGTGACTTTTCAATAATTTTTTTTTTCAACAATGGA----ACGAAAATGTTCAACTTCATAATAAAATTTGCATTATTTTATAAAATCTA----ATTATCA
s cb4.chrX              10481339 127 + 21540570 TCCAAGACA---ATTCAGACTCTTCTGACTACGCCCACTTTTTCATGATA----TCATCAACAA--TCTTTTCGTAAGAATGAACcttttggaaat-------------tggaaactttatCTATTATATTAACATTCGAATAAACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1975696  99 -  4500979 CATGGTACATCCATACAAACTCTATTGATT-------------------------------CAT--TCATGTGGTGTAAATGAA----GTATACAT-------------AATAAATATTCtaagttttattgaaaagttaTTGATAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     27524  95 +   141584 TCCAAGATA---CCTAAGAATTTACTAACA------------------------AATGCTATAT----------CGGATCTGAG----Atgtaaaa-------------atggattttgtAAACTTTTATtcaacaaaataaatattca
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3430383  89 +  4147112 TCCAAAGTA---TTGCGTATATTATTATTA------------------------TAAGTAACAT------------AATAAAAA----CTGTAAA-----------------TAATCCAAACAGTTTATTGAAACAAACTACAACTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   543531 617 +   591668 I

a score=1360979.000000
s ce10.chrX              5148880 1762 + 17718866  
s cb4.chrX              10481466 1694 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1975795 1769 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 400
s caeSp111.Scaffold567     27619 1732 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3430472 1738 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   544148 1848 +   591668  
i caeJap4.Scaffold17934 I 617 I 243

a score=-4335.000000
s ce10.chrX              5150642 29 + 17718866 ---------------CATCGTTTGATGATGAAAGCG---AATGAGAA------
s cb4.chrX              10483160 28 + 21540570 ---------------cgtt-ttt--t----tctgcg---TGAGAGAAAGACAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     29351 36 +   141584 CAT------TGGAAACGTT-TTTGAT----AAGACGCGATATGAGAA------
i caeSp111.Scaffold567  C 0 I 373
s caePb3.Scfld02_0       3432210 38 +  4147112 TCTCCTTTCTTGCGATACT-TTTGAT----AAGGC----TATGAGAA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=-911.000000
s ce10.chrX              5150671 10 + 17718866 TGCGATCATA--
s cb4.chrX              10483188 10 + 21540570 TATGATAaca--
i cb4.chrX              C 0 I 83
s caePb3.Scfld02_0       3432248 10 +  4147112 --TCGTTTCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=-1547.000000
s ce10.chrX              5150681  91 + 17718866 TGG--------GGTACATTTT---------GAATCATGAGAACCTTGTTAGAAAATACTTC-------GTGAGCA-AATAACATACAAAAAATTTAG-----AGAAACATATTTTTCATTT
s caePb3.Scfld02_0       3432258 111 +  4147112 TGTTCGATTGTGTCACATTTCTTTATTTCCGAATTCcaagaaa---agtaaaaaggaAATCAGGCGATGTGGGAATGATAACAGATGATAAACGTTGCTGTTGGAAAC------CTCATC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e cb4.chrX              10483198  83 + 21540570 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=-4570.000000
s ce10.chrX              5150772 185 + 17718866 GGAGAAGATTAAAAACAAAAATATTTGAAAAAAGGGCCTTTAAATTAGGAGCCTACAAGAATTTT--AGCAGCAGAGGAACGCATTCAGCTTGAACAAAGGATTTGA-AA----TTTTTTTCGCTGATTTTGTTAAACTAGGTTAGAGACTCATAAAATCTCCTGTTATG-TGAATTTTTGCAGACTTTTTTT
s cb4.chrX              10483281 147 + 21540570 GGAGACGGTTGAaacggaaa----ttgagaa--------tttggtCGTGAT-----GGGAACACAAAAGCAATACTGGGAGG------------AGAGATGATTTGA-AacactctgtttttttttgtaatggAAGATGAGG------------AAAAT----TGTCAAGAGAAATTTCTGGGAAAATTTGGT
i cb4.chrX              I 83 C 0
s caePb3.Scfld02_0       3432369 162 +  4147112 --ACaaaggaaaaacggaaa----tacagaaaaaagttgacaggTCATGAG-----AAAGGTTTGGAAGTCATGTCAAGATGTTTCAAGTAGATAGAAGTGTAATGATAAAGATCTTTTGGAACTgggaatggaaaatg----------------aaaa----tgtaaagAAGAAGTGTGAGGGACttttttt
i caePb3.Scfld02_0      C 0 I 133
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=315.000000
s ce10.chrX              5150957 13 + 17718866 TTATTAAGAATCA
s cb4.chrX              10483428 13 + 21540570 AAATTGAGaacaa
i cb4.chrX              C 0 I 206
e caePb3.Scfld02_0       3432531 133 +  4147112 I
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=0.000000
s ce10.chrX              5150970 260 + 17718866 ATACCATGTACCATGTATCAATACATGTACCAACTAATCAACTTTTCAGATGATAATTCATTTTCTGTATGTTTATTATTTTTCTGTATGTTCATTATCGTATGTTTATTATGTTTATTATCACGATTTCAATCGTAATAaattcaattcaattcaattcaatAGATGCATTCTGTTAGTATCATTATATGTAGTCTTTTGTAGTCTTCTAGTTTTTAGAGTAAGAGTAACTGATCAAGATGTTCTTGCTATATTATGTT
e caePb3.Scfld02_0       3432531 133 +  4147112 I
e caeJap4.Scaffold17934   545996 243 +   591668 I
e cb4.chrX              10483441 206 + 21540570 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=183.000000
s ce10.chrX              5151230 61 + 17718866 AATGTTGTTTTGCTCTACTTTTGAATGTGGATTTTTTTTTGTTGACCTAGGTACATTTAAA
s caePb3.Scfld02_0       3432664 34 +  4147112 AAtgatgtttca------ttttgagt---------ttctCGTTGA------------TGAA
i caePb3.Scfld02_0      I 133 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e cb4.chrX              10483441 206 + 21540570 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=-7471.000000
s ce10.chrX              5151291 191 + 17718866 ----ATTGATAGATAAAAAATAT---------AACTAAAAAGACAGGTTTTATAA----CCGATGGGAAATTGTATTTGTGAGATTCGGTATATTCATTCTGGCGGTTTTATTCTAATTAGTTGC----TTTAAAGTTTTTA-------AATCAA-AATA-----------TTATAAGGT-----ATTCCATGAGAAAAATAGTCGTCATTTAATGAATAGAATCACAAAAAGTTA
s cb4.chrX              10483647 198 + 21540570 ----AGTGACAGGAAAAAAGTGGTTCAGGGGGGTTTCGAAAG------TTCGTAAAAGTTAAAGGGGAGATGAGATTCAATGGCTGCGGCAAACCCAAT------GCtataaactaatttttgaaaacgtttggGTTTACTATTAAAACATGTACTGATGGATGAAACACTTGAAAATGTAGATGGTACGGTTCGATGGATAATA----------------------TAGAAGTGA
i cb4.chrX              I 206 C 0
s caePb3.Scfld02_0       3432698 177 +  4147112 ATAGACCattagacaaaaaatatatca-----acttaaaaaaa----ttttctgaccCTCCAAAGTTATATCTCATTAA-------Cgagaagctcaaa------aacatattttatcattttctaaaTTATGACGTTTCTA-------ATTTAATGATG-----------TTATTATGT-----GTTCGGTTGGTTGGATAATAG-----------GTAGACT---TCGAAATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeSp111.Scaffold567     29387 373 +   141584 I
e caeRem4.Crem_Contig0   1977564 400 -  4500979 I

a score=-1470.000000
s ce10.chrX              5151482 22 + 17718866 GGGCGACGTTGAACATCCGTCA
s cb4.chrX              10483845 11 + 21540570 -----------AAAAACAGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1977964 22 -  4500979 GGATAATGTCGAGAAACAGACG
i caeRem4.Crem_Contig0  I 400 C 0
s caePb3.Scfld02_0       3432875  6 +  4147112 ------------GAAACA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   545996 243 +   591668 I
e caeSp111.Scaffold567     29387 373 +   141584 I

a score=-1638.000000
s ce10.chrX              5151504 14 + 17718866 GCATTCTCAGTTCA
s cb4.chrX              10483856 11 + 21540570 GTA---AGAATTTG
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   1977986 14 -  4500979 AAATGTTGAATTCA
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3432881  6 +  4147112 ------TCA--TTA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17934   546239 14 +   591668 GTATTCACAATTTT
i caeJap4.Scaffold17934 I 243 C 0
e caeSp111.Scaffold567     29387 373 +   141584 I

a score=220821.000000
s ce10.chrX              5151518 428 + 17718866 ATTCTTTGCTTTTTTGCT----CTTGACGTCATTGGAGTTGTTGTCGTCAGATTGGGAGTATATGAGAGACTGGAAAATAAGACGAATTTCATAA-TCCGCTGT-GAAAAGATTAG--TGAAGAAAAAATGTGAAAATTTTCTCAGACGATACTAATATACTAA-TATTCTATAACATTCTACGTCACAAGTGTTTGCTATTACCTTTCCGAGACCTTCAAAACTGAGGCATAGATCATTGACACCAGTGACATGATCGTCCCCAATATCTGAATCCATGCTTGGCATCTTGATTATGTTGTCCTCTTGGAACGTGCGTAAAAGTCGTTTATCGTTAGTTTTCAGCTCAACGCATGAACGAGTTTTTCCAAGATCTCCAAGTTTCATATGTTTCTTCACGTTTGGACGCTCACCGATACTATCGAAAGTAGCTGAAA
s cb4.chrX              10483874 397 + 21540570 -cttcttgttcttcttcttatccttgACGTCATCGGTGGCGTTGTCGTCAGACTGGGAGTATATGAGAGACTGAAATAT------CTTATGTtaattcttttcg-aaaaagattaG--CAATGAA---------------------Gcgagaggagaaaaaaaa-gaaaaaaaaatattctacgT--CAGC------CGCTCACCTTTCCGAGCCCCTCAAAACTGAGACAAAGATCTGCTACCCCGGTGTCTTGATCGTTTCCCATGTCTGAGTCCATGCTTGGCATTTTGATGATGTTGTCTTCTTGGAAAGTGCGGAGAAGCCGTTTATCGTTGGTTTTGAATTCAACGCAAGAGCGAGTTTTTCCGACATCTCCGAGTTTCATATGCTTCTTTACAGTTGGACGCTCACCAATGGTATCGAACATTGCTAAAA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   1978007 394 -  4500979 -cttcttattcttctt------cttgacgTCAGTGTCGTTGTTGTCATCAGACTGGGAGTATATGAGCGACTGAAATAT------CTT-TCttaa-tctttcga-aaaaagattAGGCCaaaaaa---------------------aaGATCACAGAAAACACATGCGTAACTAATACGCTACGTCACAAT------GTCTTACCTTTCCAAGTCCTTCGAAACTGAGACAAAGATCTGCGAGACCGGCATCATGCTCGTTTCCAATGTCGGAATCCATGCTAGGCATCTTGATGATGTTGTCCTCTTGGAAAGTACGGAGAAGACGTTTGTCGTTGGTCTTCAGCTCAACACATGAGCGAGTTTTTCCGAGATCTCCGAGTTTGATGTGCTTCTTTACATTTGGACGCTCTCCAATGGTGTCGAAGGTTGCTAAAA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold567     29760 380 +   141584 atttcttgcCCTTCTTCTTGTCTTTGGCGTCA------TTCTTCTCCTCGGCTTGTGAATAGATGAGTGactgaaata--------aaatcttAA-TCCGCTATAGAAAAGCTTTA--AAAT----------------------------------CATACACA-CAATGACTAATATAAAACGTCACAGA-----GGTATTACCTTTCCAAGTCCTTCGAAGCTAAGACAAAGATCAGCAACACCCCCATCCATATCCGTTCCAATATCCGAGTCCATGCTCGGCATTTTGATGATGTTATCCTCTTGGAAAGTGCGAAGGAGTCGTTTGTCGAcagttttcagttcaacACAAGAACGAGTTTTTCCAACGTCGCCGAGTTTCATATGCTTTTTCACATTTGGACGCTCACCGATAGTGTCAAATGTCGCTTAAA
i caeSp111.Scaffold567  I 373 C 0
s caePb3.Scfld02_0       3432893 374 +  4147112 ACTTCTtgcccttcttcttctccttaaCGTCA------TTATTATCATCCGACCGTGAGTAGATGAGCGACTGAAATAT------TCTGTGTTAA-TCTCATGT-GAAAAGAttaa--ga-----------------------------------------gaa-gaaaaaatagaatccAACGTCACAGA-----AAGTTTACCTTTCCGAGTCCCTCAAAGCTGAGACAGAGATCAGCAACACCAGTATCGACATCAGTTCCGATGTCTGAATCCATGCTCGGCATCTTGATAATGTTGTCCTCCTGGAAAGTACGGAGAAGACGTTTGTCGTTTGTTTTGAACTCCACACAGGAACGTGTCTTCCCAACATCCCCGAGTTTCATATGTCTCTTCACATTTGCACGCTCTCCGATGGTATCAAAAGTCGCTGAAA
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17934   546253 357 +   591668 ACTTGTTGCTCTTCTTCTTCCCATTGACGTCATTAGCGTTGCTGTCGTTGCTCGGAGAATAAATAATTGACTGAAAG------------TGTTAA-TCCGTtga-atcaaaatcaa-----------------------------------------------a---------aattgtttacgtcaaaaa----caattttaccTTCCCGATGCCTTCGAAGCTTAGACAAAGGTCTTCTACTTCCACTTTGGGGCCA---CCGATGTCCGAATCTATACTTGGCATTTTGATGATATTCTCTTCCGCGAACGTCCTCAGGAGACGTTTATCG---GATTTTAGTTCAGCACAAGAATGAGCTTTGCCAATATCAGACATCCTCATGTGCTTCTTGACCGTTGGACGCTCTCCGATAGTGTCGAAAGTAGCTAAAA
i caeJap4.Scaffold17934 C 0 I 31

a score=-16966.000000
s ce10.chrX              5151946 42 + 17718866 TAGA--ATTTC------------CAAGTCTCGGTTGG------------------------CTGCTAACATTGTGTGCGG
s cb4.chrX              10484271 70 + 21540570 ------AATGCGTTGGAGTTGGGAAAACATAATTTATAAAAACTACTGAGAAACGGTCTGAACTCTACTATCAAGT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1978401 32 -  4500979 ------AGTAT------------AAAATATGATTCTT------------------------TCTTTATTATAAG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30140 32 +   141584 ------AACC-------------AACtcattatttaaaaa---------------------cttttatcACA--------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433267 31 +  4147112 TGGAACATTT-------------AGACCAATACCTAA-------------------------CCCTATT-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546610 31 +   591668 I

a score=94636.000000
s ce10.chrX              5151988 144 + 17718866 ATCACTTACGATGCTCAGGAATTGAGCTCACTGAGCACTGGCTTTTCGG---AGAGCTATCGCTGCTGTCCTTCTTACGGCTCGCCATGCTGTTGAGTTTCTTGCGAATGTCGAACTCGCTCGAAGAC---TTTGGCATCACTGAAAATA
s cb4.chrX              10484341 144 + 21540570 CTCACTTACCATTTTCAGGGATTGATGAGACCGATGATTGACTTTGTGGACTAGAACCATTGCTACCCTTCTTTTTGCTG---ACTAAGCCATTGAATTTCTTGCGGAGATCGAACTCACTTGCCGAT---TTTGGCATgcctgaaaccg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1978433 137 -  4500979 -CCACTTACGATGCTCTGGAATCGAGCTCACGGAGCATTGGCTTTTTGG---AGAGCTGTCGTTGCTGTCCTTTTTACGAGACGCCATGCTGTTGAGTTTCTTACGAATATCAAACTCACTTGAAGAC---TTTGgcat------cactg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30172 143 +   141584 -TAACTCACGATGCTCAGGAATTGAGCTGATAGAGCATTGACTTGGCGG---AGTGCTGCCATTGCTGTCCTTTTTGCGACTTGCAATGCTGTTCAGTTTCTTGCGAATGTCAAACTCGCTCGATGAC---TTTGGCAtgactgaaattt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433298 143 +  4147112 -TTACTCACGATGCTCCGGTATGGAGCTCACAGAGTTTTGACTTGGTGG---AGTACTACCGTTGCTGTCCTTCTTGCGGCTAGCAATACTGTTCAGCTTTTTACGAATATCAAAATCGCTCGAAGAC---TTTGACAtaactaaaaatg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   546641 147 +   591668 ATAACTTACGATGCTCTGGAATTGAATTGACGGAAGATTGGCTTTTTGG---CGAGCTTCCACTGCTGTCCTTCTTACGGCTGCCAAAACTGTTCAGCTTTTTGCGCAAGTCAAATTCGGAAGTTGATTTGTTCGGCATACCTGACAATA
i caeJap4.Scaffold17934 I 31 I 2666

a score=25050.000000
s ce10.chrX              5152132 238 + 17718866 TCACAAATATCACTAGGAATAGTTGAAATGAAGCTCCTGGTTAGCTAAAAAGTTAATCACTTAAAAACATGGAA-AAC---GAATATAGCGCGGTTCAG-----------ACAT---CTTGATAGTTTTCCTT---GCTAATAAT----------CACCAAGTAACA------------------------TGTGAGGGTGGAAAA------------AAA-AAGAAGATTTCCGTTTTGATTTT---------GAATTGCTTC--GTGGTGTTTTAAGAACCGGAAATAAAACAGGAAATTGAATTGAACAAAAAA
s cb4.chrX              10484485 273 + 21540570 ----aaaaaataaattgaag-aaggagaagaagctcTA-------CAATACGAAAGGGGCGTCAAATT---GACATGT---GTCTGAAACg-cgaagaaatttttttcgcggATTCCCTTGACATTTTTCTTTGACTCTAGTAATGAAAAATAATCGCTCAATAACA------------------------TGTGAGGGTGGAATACTCCTCTTGCTCATA-ATGAAGGTTTCCGCCTCGATTTCATTCTCATGGTGATGCCTCATATAGTGTTTTTAATAACGGAAATGAAACAGGAAATTGAGTTTTACGATAGA
i cb4.chrX              C 0 I 169
s caeRem4.Crem_Contig0   1978570 235 -  4500979 ----aaaaaataatctgaaC-AATTATACGAAACTCTAGGA-AGGCACAACAACATAAGCCAAAAAAT---GGC-TGT---GTCTGAATTG-GGCAAAG-----------TGATTCCCTTGGCACCTTTTTCT--TGCTAATGAGAGAAAACTAACGAAAAATAACA------------------------TGTGAGGGTGGAGAACTTTTT----------GTGAAGGTTTCCGTTTCAATTTT----------CGATGCTTC--ATAGTgtttttgaaaccggaaatCAAGCAGGAAATCGAATTC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30315 241 +   141584 ----gaaaaaagttagaaac-GCACACTTGAAGCTCTATAATATCTAGAACAtcatcaataaaaaaaa---gaa-aaagagatataaAATTCAGCTCAA-----------TGATTCCCTTGACAGTTTTCCCT---ATTAATGAGAATAA-----AACGCAATAACA------------------------TGTGAGGGAGGAATA--TCAC----TAATA-GTGAAGTTTTCCGTTTCAGTTTA---------GCTGTCTTCT-TTTAGTGTTTTGAAAACCGGAAAACGAacaggaaattgaattcaa-------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433441 268 +  4147112 ----aaacaaagttAGACAC-GCTATAATGAAGCTCTATAAAATGGCTAATAACATCTACGCAACAgc---aga-aaa---atctagaat--ggCTCGA-----------TAATTCCCTTGACAGTTTTCCCT---ACTAATGAAGTTTAATCCGAATGCAATAACATATATAAAAGTGTCTCTCTTGATGTGTGAGGGTGGGATACTTCTC----TCACATGTCTAGTATTTCGTTTCAGTTTG---------AAGACgcttt-tttagtgtttttaaAACAGGAAATCGAacaggaaattgaatttga-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I

a score=1800.000000
s ce10.chrX              5152370 28 + 17718866 ATTGAGTCAAAACATCTGACACATTTGT
s caeRem4.Crem_Contig0   1978805 19 -  4500979 GTTGAGTCTAAACACCTAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30556 26 +   141584 --tgcgACTGAACAGCTGATCAGTCTGt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433709 19 +  4147112 --agagcCAAAACAGCTGACA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10484758 169 + 21540570 I

a score=-9351.000000
s ce10.chrX              5152398 154 + 17718866 GAGTTTGA-TACTATCAAATTTAGAGGTTTAACGGTACGGAGCCTTAGAGTACCGAAATCTGAgactttagacttttagacccaaaatcgccccttaatacctaatttcgtaaggaaacatttcgaaaatcattttttggtgtaaattttgtcgg
s caeRem4.Crem_Contig0   1978824  45 -  4500979 ACTGCTGACTACTAT----------GGTTT--------------------------------TGGCTCTCCATTTGTG--------------TTTTAATac------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3433728  22 +  4147112 ---GCTCA-TACTCT---------------------------------------------------TCTAGGcttgt------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10484758 169 + 21540570 I
e caeSp111.Scaffold567     30582   0 +   141584 C

a score=-16724.000000
s ce10.chrX              5152552 300 + 17718866 ttcaaagttttggaaaaGGCAGGTTTTCAACTAATCGCTCAATTTTTTTCTAAAACTGtgaactgccaaaacttttttaaaaaaatttccagaacgtctcattgccaaactcggtagttttgagctaacgtggagtttaaAATAGGCTAAGATTTTGGTATTTCACCTTTAATTCTGAAGAAAAAAGCTAAATAATGAAAAATAAAAGA-GAAAACCTATGTGATATTCTGTTAGAAGAAACAAACAAGCAGTTGTGAAGGCAGCGAGCTGTCTCTTCCCCTATATTTTCCTATCTTCTCA
s caeRem4.Crem_Contig0   1978869 112 -  4500979 ------------------------------------------------ttcaaaattga----ttttgaaatcattacagaaaaaa------------------------------------------------------------------gtttt---tgtcaaA----------CAAAGAGAAGC-----aatggaaaacaa---atgaaagtttttgagaga-----------------------------CAAAT--------------------CACAGCTTTTCAATTCTCTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     30582 132 +   141584 tttaatgtttttgaaaaa----------------------agttttctttcaatattga-------aaaaacgaaaatgagaagGT------------------------------------------------------------------GTTTGGTATTTCGAAGCGAC-----Taga----------------caaaacaa---a-aaaagtttttatgcGA-----------------------------CGAGG--------------------CGGtgctttctcattttctct
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433750 144 +  4147112 ttcaatgttttgaaaa----------------------------tgcttcaaataaTGA----TGTTGAAACTAAAACAAAGAGGC-----------------------------------------------------------------GGGTTGACATATTAGAGACACAT---TAGAAAGAAGC-----AGCTCAAAAC-----A-agaagtttttctgata--------------------------atgCGAAG--------------------CTGTTCTCTCTCGTTTTGCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10484758 169 + 21540570 I

a score=27935.000000
s ce10.chrX              5152852 176 + 17718866 TTGAAACCGTCTAATTAGCGTGGGAGAATGTACATGGTGATATTTCACG----AAAAGTAGGAGACGGAAATTGGAAATAACAAAAA---ACATAGA---------------AAAAACTATACCTCTGTCGATTTCAGTCTTATCGAGAAGAGTAACTCGCGCTTTTCTGTTGAAACCACGGTGGGGAGCAATTGGGC
s cb4.chrX              10484927 171 + 21540570 TCGAAACCGG-TAATTAGT--------ATATGCATCGCGATATT--------------TCACGCGT-GACATTTCGAGTATTCGAATAACATAAATAAATTGGAAAACCTACACAGCCCCCACCTCC---ATTGTAGGTCGAACCGATGAGTACTTTACGGCTTTTCTCATTGAATCCACGGTGTGGAGCGATCGGAC
i cb4.chrX              I 169 I 448
s caeRem4.Crem_Contig0   1978981 179 -  4500979 TCAAAACCATCTAATTAGTG-GACAGAATGTGCATTGTGATATTCTTGA----AATACTGATATAT-GCCAtttcaaata----------acaaaaacatcaaaaaactactgaaaactATACctct---gatttcatttttttcaagaaggGTTTCACGAGCTTTTTTACTAAAGCCTCGATGAGAACCGTTACCAT
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold567     30714 176 +   141584 ccaaaacCTTTTAATTAATG-AACAGAA-AAGCATCGtgatattttcgaaaataacaATGTTACGC-GGAACTGGCcatatctgaaa---aca------------aaccaA-AGAAACAGTACCTct---gatttcattcttctcaagAAGAGTCTCACGAGCCTTTCGGCTGAATCCCCGGTGAGGAGCAATCGTAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3433894 182 +  4147112 TCGAAACCTTCTAATTAGCG-GACATAATGAACATCATGTTATTTTCAA----GACACTGAAATGC-GAATAtcggaataacaaaaa---acaaaaaaa---aagaaccaa-aaaaactttacctct---tatctcatttttctcaagtaAGATGGCACGAGCCTTTGCTCCGAAACCTCTGTGTGGAGCAATGGGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I

a score=12512.000000
s ce10.chrX              5153028 264 + 17718866 TAC------TGCCCTC---CATTTGTATGTCACCTGAAAAT-GATAAATGATCGAATA--GGAGTGAAGATATTATGTCATATGTCAGC--------------CTGAATCAGGTGACAACGTCGCATTACACGCGTATTCAAAACACTAATGAGTCAACCAAGAGCAGCGCC-----CTTTCGTAAAGTCTACATC-GCATATTCAAAAGTCTATTCAATAGTTTATAATAAACTAAAAA-----ATGTCGCCCGTATTTGGAAATCGTCGTGTAAATAAGATATA-----AGAAGCCATTTTTGT--
s caeRem4.Crem_Contig0   1979169 250 -  4500979 ---------TCTCGTccatatttttcgatttgactggaagtgagaaaaagtttaaata--aaTATCAAAACGTTA--TCACGAGT-AGA---------------TATATCAGGTGA-----TCGAATT--ACGCATATTCAAAACATTAATGAGTCAACC--GAGTATCACcggatatttttgaaaagtctaCACCTACACGC-----------TTGAATAGTTTATAACAAACCAGAAAGACGTATGTC-CCTAAATAT---GGCTTTCTTGTTAACAAGATGAT-----GGAAGCCATTCACGTGT
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold567     30890 239 +   141584 TGTTAGAAACGCCGTC---GTCCTCCATTCTGACTTGAGCTGAAAGTGACATTATG----AATGAGAAGATGTTT-GTCAGATGTCATA-------------TGTCTATCAGGTGA-----GCAAATT--ACGCGTATTGAAAGCTCTAATGAGTCAACG--TATAAGCATT-----TCTTAGTAATGTCTACGCCAACACGT-----------TTCAATAGTTCATAATAAACTAAAAAGACGCATGTC--------------ACTACGGCTTTAAACAGA--AT-----AGAAGCCATTCACGT--
i caeSp111.Scaffold567  C 0 I 130
s caePb3.Scfld02_0       3434076 265 +  4147112 TGCAGAAGTTTCCATC---GTCGCTCATGACAACTGGAAGT-AAAGGAATATCTAGTTCCAAAATGAAGAAGCTA-GTCAAATGTCAGAGTATATATATACGTCTCTATCAGGTGG-----TTGAATT--AAGTTGATTCATAAC---ACTGACTCAACC--GAGGATCACTCGGTACTTCAGTTAACTCTACGCCTACATGC-----------ATGAATAGTTTCTAATAAACCAAAATGATgtatatt-ca----------aattttcataataCTCAGA--AGCCAGAAGAAGTCATCCATCA--
i caePb3.Scfld02_0      C 0 I 24
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485098 448 + 21540570 I

a score=-6187.000000
s ce10.chrX              5153292  79 + 17718866 CAATTTTTTCTGTTTTCTTGGTTTAGGTTGTT----------CTTGAAAAACAA-----------TTGCACTAATAATA--------------CTCAAAATG--ATGATGATGCTC------
s caeRem4.Crem_Contig0   1979419  92 -  4500979 --------------TAAG-----AACTCCGTTAAAAAGAC--CtcgaaaagcaaaaaatctgaCTGTGCACATAAAAGT-ACTTTGAAAGTATTTCAAAATC--ACGATTAAATTC------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3434365 113 +  4147112 -AGATTATACCTAATGAGTGATAAATGCCGTtgtggaaactttttgaaaaatgaaacatt--------catGAAGAGGTCACTTTCAGGAACCCtcaaagttcaaagaaaaaagtgttgctc
i caePb3.Scfld02_0      I 24 I 2
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485098 448 + 21540570 I
e caeSp111.Scaffold567     31129 130 +   141584 I

a score=-8885.000000
s ce10.chrX              5153371 109 + 17718866 ------------AACGAAAA--------------------------------TG---TTGAGATG--------TATATTTTCAATCTTGAATTCTCATCCTAAA-TATCAAATTCGTAAGAACAAAACTAGAAATAGGTAATCATATAGTAAACTACATTTTGAA
s caeRem4.Crem_Contig0   1979511 139 -  4500979 ATTTTAGATCACTTTAAAAA--------------TCCCACTTTATGTCACTGTG---GTGCTATG-AACAAAACTAGTCTCAAGTTCT--ATTTTCGTACTCAA-ATTTGAAtgtataaaaacaaaatttgaaatatgc-ATCATGGTGTAAACCACGTTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     31259 136 +   141584 ------------aacaaaaagtaGTGATGGgataaataattttatgaaaagGTACA-ATGACGTgaaactgaatatttttgcAAGCCT--ATGATAACAAATGTGGAAGAGGGTtatagaagaagagagagagaa--------------taaacTACGCTCAAac
i caeSp111.Scaffold567  I 130 C 0
s caePb3.Scfld02_0       3434480 110 +  4147112 ------------aatgaaaa----------------------tgtgaaactttAAATCCGAcata---------actttttcattttt--attttaacaTTAGT-GATGGGATATATAAAAACGAAATGGGAGAAG---------GTAGTAAACTACGGCCGGAA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485098 448 + 21540570 I

a score=32193.000000
s ce10.chrX              5153480 175 + 17718866 GAGAAAAGATGCTGAGGGCTACGTAATAGTCAGGTTTGCT-ATGATATTTATACGCTATTCGCTTGTTCGTCACAGCATTCAT--TTCGAAC---CTCACACGGATTATCTCCTCTTTAACAATAGCTTGTTATCTCCTGAATAAGT-------GAGAAATGTGCTCA------GCGTTCAT---CGCTCATTGCTC
s cb4.chrX              10485546 178 + 21540570 GAAGGAAAGTTTTGAATGCCTCGTAATAACC-AGTTTCTTCTTCATATTTATACGACA-TTCTTCGCTCGTCAGAGACTTCTTCTCGTGTGTTGGCTCATGAGGATTATGAT--TTTTGACAATAGCTTGTTATCAATTTTATTAGTCCTATCTCCAGACAA------------CAATGCAT---TGCTCATTGCTC
i cb4.chrX              I 448 I 5162
s caeRem4.Crem_Contig0   1979650 182 -  4500979 -GAGGGACGTTTTGAGGGCGGCATAATAGTT-GGTTTCCT-GTGATATTTATACGCCA-TCGGTAGCTCGTCAGAGAGATATCTTCGAGTGT---CTCACAAGGATTATGGC--TTTTAACAATAGCTTGTTATCATTTATATGAGtct--tttcaaaacgaaattCTGAT---CAATTCAT-GCTGCTCATTGCTC
i caeRem4.Crem_Contig0  C 0 I 1001
s caeSp111.Scaffold567     31395 178 +   141584 ----tagttttcagaaagctCTATAATGATG-GGTTTC---GT-CTATTTATACACCG-CTGCTTGTTCGTCAGAGATTTCGC--TGAGAAC---CTTTCTAGGATTATCTC--TTTTAACAATAGC--ATTATTAGTTATTTCGGATGTCTATGAAAACAGGATATAATGAGCTCACCAATCACCGCCTATCGCAT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3434590 180 +  4147112 ----AAGTATATTGAGTGCCACATAATCACC-GGTTTCCG-GTGATATTTATACTCCC-TCGGTTGTTCGTCAGAGATTTCGC-GGGAGAAC---CTTTCAAGGATTATCAC--TTTTAACAATAGCTTGTTATTAGTTATAtgaatcttcta-gaaaactGAATTGGCTA---TCATTTATAACTGCTCATCGCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   546788 2666 +   591668 I

a score=704.000000
s ce10.chrX              5153655 10 + 17718866 TTGTGAAGAA
s caeSp111.Scaffold567     31573 10 +   141584 GAATCAAGAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3434770 10 +  4147112 AATTTAAGAA
i caePb3.Scfld02_0      C 0 I 3142
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485724 5162 + 21540570 I
e caeRem4.Crem_Contig0   1979832 1001 -  4500979 I

a score=91.000000
s ce10.chrX              5153665 1 + 17718866 A
s caeSp111.Scaffold567     31583 1 +   141584 A
i caeSp111.Scaffold567  C 0 I 665
e caePb3.Scfld02_0       3434780 3142 +  4147112 I
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485724 5162 + 21540570 I
e caeRem4.Crem_Contig0   1979832 1001 -  4500979 I

a score=0.000000
s ce10.chrX              5153666 1084 + 17718866  
e caePb3.Scfld02_0       3434780 3142 +  4147112 I
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485724 5162 + 21540570 I
e caeSp111.Scaffold567     31584  665 +   141584 I
e caeRem4.Crem_Contig0   1979832 1001 -  4500979 I

a score=486.000000
s ce10.chrX              5154750 40 + 17718866 CAAAGTAAAAATCAATAAGGAACTTGAGATTTAAAAGTTC
s caeSp111.Scaffold567     32249 36 +   141584 caaaagaaaaat-aatgagaaa---aaaactgaaacaaac
i caeSp111.Scaffold567  I 665 C 0
e caePb3.Scfld02_0       3434780 3142 +  4147112 I
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485724 5162 + 21540570 I
e caeRem4.Crem_Contig0   1979832 1001 -  4500979 I

a score=-1844.000000
s ce10.chrX              5154790 253 + 17718866 TGGCCTAAAA------ATGACTACGGTAACTC-AGATT---ATTGTTGCCATCATTTC----------AACAAAGAACCAATTG---CAAGGGCTAATCTGGTGCAAACACTTGTTTTTTTCTTCAAAATTTCGAAGCTGCTAATCTCTTT-------TATTGCACACAATCTTAAACACGGACTGGTTGTGGAACATTTAATG--AGGATAACTGAAAGCTAAAAAATATTGCATTTTTGAATGCGTTCCTTTCGAATTTAGGTCAGTGGAGTG------TGAATGTAGA
s caeRem4.Crem_Contig0   1980833 234 -  4500979 TGGCCTAAAAT-----CTGACTACGGTAAATGGAGATTCTAATCCGTGAATAGATTTCAGTGTTGAACAATGAATAA--GACCGGATGAAGGTCTAATCTGGT------ACACG-------------AACTTTAACGATTTTAATCTCTTG-GTGGCAGATCTCACACGTTTGTTAACACGGAGCTGTTCTATTGAATTGAATGTTTGAACacttgaa----caaaaaaactgaa-----gaatcgAAAATC-----ATGTAAGG----------------TCGAAATGAG
i caeRem4.Crem_Contig0  I 1001 C 0
s caeSp111.Scaffold567     32285 238 +   141584 tggcccaaaataactactg--tacgagaaaaagagatt---attCGTGCATAA---------------AAGGAAGAAACGTCCG---GAAGGGCTTATGCCGT------ACTTG-------------AACTTTGCCTGTTTTAATCTTTTTCGTCAAAGATTTCAGATATTACTAATCACGGAGTTGTATAACAATATAGATGAcaagaagatttg--------aaaacgtTGGA---ATGATGTTATAATCACTGAATGTAAATTTGTGAATTGaagttctcaaaaagaa
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3434780 3142 +  4147112 I
e caeJap4.Scaffold17934   546788 2666 +   591668 I
e cb4.chrX              10485724 5162 + 21540570 I

a score=-6233.000000
s ce10.chrX              5155043 80 + 17718866 TTATTAGGTA-------TGTACTTTACGCA--------------------TGATGAAATTTTATTTTGGAATCTGATTATAAAGTTTGAACGGCAAAAAATGAGTAG
s caeRem4.Crem_Contig0   1981067 71 -  4500979 TTACT------------CTCAAAATATGGT--------------------TGATTAACATTTATTCTGGGTGCATATACTGACatc----caacagaaaaaaagaaa
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold567     32523 61 +   141584 tgatg------------CGCACAGTATGGT--------------------TGAATGA-GTTTATTACGGGT-----TACTGA--------ACATagaaagtagaaaa
i caeSp111.Scaffold567  C 0 I 6
s caeJap4.Scaffold17934   549454 86 +   591668 TCATTAAGAACACCTGTTGCacaaattggaatttttcgacTTGAAAAATGTGAAGCAAGTTTATTTCAG---------------------GGTTAAAACACGAACAC
i caeJap4.Scaffold17934 I 2666 C 0
e caePb3.Scfld02_0       3434780 3142 +  4147112 I
e cb4.chrX              10485724 5162 + 21540570 I

a score=-5424.000000
s ce10.chrX              5155123 9 + 17718866 AGAATTGC-A--
s cb4.chrX              10490886 8 + 21540570 AAAATTGT----
i cb4.chrX              I 5162 C 0
s caeRem4.Crem_Contig0   1981140 2 -  4500979 ------ca----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold567     32590 8 +   141584 -AGATTCTC---
i caeSp111.Scaffold567  I 6 C 0
s caeJap4.Scaffold17934   549540 9 +   591668 -AAATTCT--CC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3434780 3142 +  4147112 I

a score=187809.000000
s ce10.chrX              5155132 263 + 17718866 TCAAAAAAGGGTTCCACGCTTTTCCTGTTCACGTTCCACTGCGTCGAACAGCGCTTTGAAATTTCCAGCTCCAAACCCCTGAAAATCGAATTA--GACAATC----------AACTCAGTCAGTCATATTAATTTGAAAAAAAAACCTTGAAATTCGCCCGCTGGATAATCTCGATGAAGAGCGTGGGTCTATCTTGCAATGGCTTGCTGAAAATTTGGAGAAGATAACCGTTCTCGTCAAAGTCCATGAGAATGTTCAATTCGCGAATCTGGAA
s cb4.chrX              10490894 253 + 21540570 TCAGAAAAGGGTTCCTCGCTTCTCTTGTTCACGTTCTACTGCATCGAACAACGCCTTGAAGTTTCCGGCACCAAATCCCTAAAAG------AAACAATAGGT-------ATAAAGGAAATCAGTAGAGCTAACT---------CACCTTGAAGTTGGCTCTTTGGATTATCTCTATGAATAGGGTAGGCCGATCTTGCATAGGCTTACTAAAGATTTGGAGGAGATACCCGTTCTCATCAAAGTCCATCAGGATGTTGAGCTTGCGGATCTGGAA
i cb4.chrX              C 0 I 366
s caeRem4.Crem_Contig0   1981142 250 -  4500979 tCAGAAGAGAGTTCCTCTTTTCTCCTGCTCACGTTCTACTGCGTCAAAGAGTGCCTTGAAGTTCCCGGCACCGAAACCCTGAAAA------CA--GATAATT-------GTGAAGTGAAGCAAGAAAA-TCACC---------AACCTTGAAGTTAGCCCGTTGGATGATTTCTATGAAAAGTGTAGGTCGATCTTGCATGGGTTTACTGAAGATTTGTAAGAGATAACCATTCTCATCAAAGTCCATGAGGATATTCAATTTAcggatctggaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     32598 248 +   141584 TTAAAACAGAGTGCCCCTCTTCTCCTGTTCACGTTCCACTGCATCGAAGAGAGCCTTGAAGTTTCCAGCTCCAAAaccctgaaaa------ca--aaaagtt----------gaatCAATGTGGAAAATCTACC---------AACCTTGAAGTTATCCCgttgaataatttcaatgaatagCGTGGGTCGGTCTTGCATTGGTTTGCTGAATATTTGGAGGAGATAACCATTCTCATCAAAGTCCATCAGTATATTCAGTTCACGGATCTAAAG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3437922 254 +  4147112 tcaaaaaagcgttCCTCTCTTTTCCTGTTCACGTTCCACTGCGTCGAATAAAGCCTTGAAGTTTCCAGCTCCAAAaccctaaaaa------ca--aaaagttaagATTCGGAGAATGATCGAACGAAATTT-------------ACTTTGAAGTTGGCACGTTGAATAATCTCGATGAAAAGCGTGGGCCGGTCTTGCATTGGTTTACTGAATATTTGCAGGAGGTATCCGTTCTCATcgaaatccatcaaaatgttGAGCTTTCGGATctgcaa
i caePb3.Scfld02_0      I 3142 C 0
s caeJap4.Scaffold17934   549549 254 +   591668 TCAGAACAAAGTACCACGCTTCTCTTGTTCTCGCTCCACTGCGTCGAAAAGAGCTTTGAAATTTCCAGCTCCAAAAccctggaaaacg---aa--attaaTA-------TTGAAAGGAAACGGGGATTTTGAAA---------AACCTTGAAATTGGCTCTTTGGATAATTTCTATAAACAAGGTAGGCCGGTCTTGAACTGGTTTTGTGAAGATTTGCAAAAGATATCCATTTTCATCGAAATCCATGAGGATGTTTAGTTTTCGAATCtggaa
i caeJap4.Scaffold17934 C 0 C 0

a score=54.000000
s ce10.chrX              5155395 1 + 17718866 A
s caeRem4.Crem_Contig0   1981392 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     32846 1 +   141584 T
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3438176 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   549803 1 +   591668 a
i caeJap4.Scaffold17934 C 0 I 550
e cb4.chrX              10491147 366 + 21540570 I

a score=-1456.000000
s ce10.chrX              5155396 18 + 17718866 TAAAGTTTAATTAAAATA
s caeRem4.Crem_Contig0   1981393  6 -  4500979 aaaa----ga--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     32847 14 +   141584 CAAT----AATTAAAACA
i caeSp111.Scaffold567  C 0 I 19
s caePb3.Scfld02_0       3438177 14 +  4147112 gaaa----aattgaattt
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold17934   549804 550 +   591668 I
e cb4.chrX              10491147 366 + 21540570 I

a score=-791.000000
s ce10.chrX              5155414 5 + 17718866 GAATG-
s caeRem4.Crem_Contig0   1981399 5 -  4500979 caatt-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3438196 5 +  4147112 -aaatg
i caePb3.Scfld02_0      I 5 I 16
e caeJap4.Scaffold17934   549804 550 +   591668 I
e cb4.chrX              10491147 366 + 21540570 I
e caeSp111.Scaffold567     32861 19 +   141584 I

a score=66.000000
s ce10.chrX              5155419 95 + 17718866 ATGAGTTCTGAATTATAATATTTACAGC---AGG-----GGTCAGTGTATATTAAATTTTCATTCAGGGAAACTTTTCAAGGACTATTCAGAAATTGCCGGCA
s caeRem4.Crem_Contig0   1981404 94 -  4500979 atGAGTGTTGGGTAGTGACCCTAGTGGCTTTGGGTAGTTGGGTAGTGTCT-TTAGAATGTCACTCTCGCAA---TTTCGA-----ATTCAGGAAACTCCGTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3438201 16 +  4147112 I
e caeJap4.Scaffold17934   549804 550 +   591668 I
e cb4.chrX              10491147 366 + 21540570 I
e caeSp111.Scaffold567     32861 19 +   141584 I

a score=0.000000
s ce10.chrX              5155514 890 + 17718866  
e caePb3.Scfld02_0       3438201  16 +  4147112 I
e caeJap4.Scaffold17934   549804 550 +   591668 I
e cb4.chrX              10491147 366 + 21540570 I
e caeSp111.Scaffold567     32861  19 +   141584 I
e caeRem4.Crem_Contig0   1981498   0 -  4500979 C

a score=300.000000
s ce10.chrX              5156404 1 + 17718866 C
s caeRem4.Crem_Contig0   1981498 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3438217 1 +  4147112 C
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold17934   549804 550 +   591668 I
e cb4.chrX              10491147 366 + 21540570 I
e caeSp111.Scaffold567     32861 19 +   141584 I

a score=733.000000
s ce10.chrX              5156405 4 + 17718866 ACGC
s cb4.chrX              10491513 4 + 21540570 accT
i cb4.chrX              I 366 C 0
s caeRem4.Crem_Contig0   1981499 4 -  4500979 ACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3438218 4 +  4147112 ACCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   550354 4 +   591668 ACAT
i caeJap4.Scaffold17934 I 550 C 0
e caeSp111.Scaffold567     32861 19 +   141584 I

a score=91051.000000
s ce10.chrX              5156409 102 + 17718866 ACCATTTTTAAGTCTTCCTTGACTATCAAATTTGTTTTGCTTAGCCTTTCTTCCAAATTGTCATAATATTGGCTAGGGATTGTGAGAAACTCCACGCTTCTG
s cb4.chrX              10491517 102 + 21540570 ACCATTTTCAAATCCTCCTTTACATTCAAATTTGTCCTGCTCAGCCTCTCTTCTAGAATATTGTAGTATTCACCAGGGATCGTGAGAAACTCCACACTTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1981503 102 -  4500979 ACCATTTCTAAATCCTCCTTTACATTCAAGTTTGTCTTGCTCAGTCTATCTTCAAGAATGTTATAATATTCATCCGGAATTGTAAGAAACTCAACACTCCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     32880 102 +   141584 ACCAGTCTTAAATCCTCTTTGACTTTCAGGTTTGTCTTGTTCAGTCTTTCTTCAAGGATATCATAATACCCGCTAGGAATGGTTAGAAACTCAACACTTCTG
i caeSp111.Scaffold567  I 19 C 0
s caePb3.Scfld02_0       3438222 102 +  4147112 ACCATTTGTAAATCTTCTTTGACATTCAAATTGGTTTTGCTCAATCTCTCTTCAAGAATATTGTAGTATTCATCTGGAATGGTTAGGAATTCCacgcttctg
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold17934   550358 102 +   591668 ACCATTTTCAAATCTTCTTTCACGTGCAGATTTGTTTTGCTTAACCTTTCTTCCAAAATGTTATAATATTCATCAGGGATATTGAGAAAATCGACACTTCTG
i caeJap4.Scaffold17934 C 0 C 0

a score=2250.000000
s ce10.chrX              5156511 3 + 17718866 ----AAA
s cb4.chrX              10491619 3 + 21540570 ----AAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1981605 3 -  4500979 ----AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     32982 3 +   141584 ----AAA
i caeSp111.Scaffold567  C 0 I 27
s caeJap4.Scaffold17934   550460 7 +   591668 AACAAAA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3438324 40 +  4147112 I

a score=-4834.000000
s ce10.chrX              5156514 32 + 17718866 GTGTTTTTTTTTTGTGCTTTTAAAATAAGTTC---
s cb4.chrX              10491622 22 + 21540570 CTG----------ACAACATTATAAAGAACGC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1981608 22 -  4500979 ATG----------GCATGtctggaaatgtttt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   550467 26 +   591668 ---------GTCATcatcattttaattattttatt
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3438324 40 +  4147112 I
e caeSp111.Scaffold567     32985 27 +   141584 I

a score=910.000000
s ce10.chrX              5156546 1 + 17718866 T
s cb4.chrX              10491644 1 + 21540570 T
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1981630 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold567     33012 1 +   141584 t
i caeSp111.Scaffold567  I 27 I 9
s caeJap4.Scaffold17934   550493 1 +   591668 t
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3438324 40 +  4147112 I

a score=75816.000000
s ce10.chrX              5156547 106 + 17718866 CTCACCTGCTTTTCATTATTTGGACTGCAGATATAATATCTTCAACTAATAAAGCAAAATGTTGAACTCCTGAGCCACCATGATAATTAATGAATTCCTAAAAAAA
s cb4.chrX              10491656 106 + 21540570 TTCACCTTGTCTTCATTAGTTGAACCGCTGAAATGATGTCATCAACAAGAAGGGCAAAGTGTTGAACGCCAGAACCGCCATGAAAACTGATAAACTCCTGAAAAAA
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   1981642 106 -  4500979 CGTACCTCCTCTTCATTAATTGAACAGCAGCAATAATATCGTCTACCAATAATGCAAAATGTTGAACTCCAGAGCCTCCATGGAAGTTTATGAATTCCTGCAAATG
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold567     33022 106 +   141584 taaacctGAACTTCATTAGTTGAACCGCTGAGATGATATCAAAAACAAGGATTGCAAAATGCTGGACACCAGAACCACCATGAAAGTTTATGAACTCCTGAAACCA
i caeSp111.Scaffold567  I 9 I 48
s caePb3.Scfld02_0       3438364 106 +  4147112 TCAACCTGCTCTTCATCAGTTGCACTGCGGAAATGATATCCTCAACGAGTAATGCAAAATGTTGAACACCGGAGCCTCCATGGAAGTTTATGAATTCCTAGAAATT
i caePb3.Scfld02_0      I 40 I 30
s caeJap4.Scaffold17934   550494 103 +   591668 cttaCCGGGTTTTCATCAGCTGCACTGCACTAATAATGTCATCAACTAGTAGAGCAAAGTGCTGAACTCCTGATCCTCCATGAAATGCTATAAACTCCTAAAA---
i caeJap4.Scaffold17934 C 0 C 0

a score=462.000000
s ce10.chrX              5156653 8 + 17718866 CAAAAATA
s cb4.chrX              10491762 4 + 21540570 ----GTCA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1981748 4 -  4500979 ----AACA
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3438500 8 +  4147112 CGAAAATA
i caePb3.Scfld02_0      I 30 I 123
s caeJap4.Scaffold17934   550597 8 +   591668 CAAAATCT
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     33128 48 +   141584 I

a score=-7196.000000
s ce10.chrX              5156661 37 + 17718866 TGAGCATG--------AAAATT-------------TGCAAGTTATTTTTGTTTGTTAA
s cb4.chrX              10491770 19 + 21540570 ----------------CAGATT-------------CGAAACATA----------TTAA
i cb4.chrX              I 4 I 6
s caeRem4.Crem_Contig0   1981761 19 -  4500979 ----------------tcattt-------------tgaaaaaca----------ccaA
i caeRem4.Crem_Contig0  I 9 C 0
s caePb3.Scfld02_0       3438631 48 +  4147112 GGAGCATGAAGGACGGCAGATTTTGAGTTAACCTATGAAACAGA----------GCAA
i caePb3.Scfld02_0      I 123 I 89
s caeJap4.Scaffold17934   550605 27 +   591668 ----------TGTTGAGAAGCT-------------CGAAAAACC--------TGGTGA
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     33128 48 +   141584 I

a score=306404.000000
s ce10.chrX              5156698 408 + 17718866 ATCTACCTCAATTTGACTTTTTCCCTTCCGTCCCTTTACTCCTTCTGCTAATGTAACCTGTACAGTATGATCATCATTTACTAACAGCCAAGCGGTCATGGCAGAAAATTCTGATGTTGCAACTTTATCGTCTACGGACCAAAACCTTTTAAGCCTCATTGTCTTAAAATACCAATCGGCGGCTGCTTCCATCTCCCCAATTGGATAGTTTTGAACTACATGATCCATAAGGATTGCGGGCATTTTTTCTCTGTA------A-A--ATTGTTGATTTTAT---TTCAACATTCC-------CTATCTTCAAAGTCTCACATATTTTCGAACAATTCAAAATTAGAAATCGGTGTGAAAAACGGGAGAAAGTTTCCTTTGAATTCTCCCAGCTCAAAAAGTGTGTGAGTGACATCACCGCCCTAAAA------C
s cb4.chrX              10491795 415 + 21540570 ATCTACCTCAATCTGacttttcccttttctccCTTTCACTCCTTCGGCGAGCGTCATTTGTACCGTATGATCCTCATTAACCAAGAGCCACGCACTCATCGCAGAGAATTCCGAAGTGGCGACTTTATCATCCACTGACCAGAACCTTTTCAAGTTCATCGTCTTATAATACCAGTCAGCCGCTGCCTCCATCTCTCCAATTGGATAGTTCTGGACTACGTGGTCCATTAGAATTGCTGGCATCCTTTCTCTGAA------Acc--aatctgtttttcat--cCCGACtattt--------gttttctttctaAGTTACATTCTGTCGAACAACTCAAAATTAGCTGTCGGCGTGAAATAAGGAAGAAAGTTTCCGGTGAATGATCCCAACTCATAAAGTGTGTGCGTCACATCACTTCCCTAcaatgaaata
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   1981780 409 -  4500979 ----ACCTCGATTTGACTCTTCCCTTTCCGTCCCTTAACTCCTTCAGCCAGCGTCATTTGAACAGTATGATCTTCGTTTACAAGAAGCCATGCACTCATTGCGGAGTATTCTGACGTGGCAACTTTATCGTCAACAGACCAGAaccttttcagtttcattgtCTTGTAGTACCAATCCGCTGCTGCTTCCATCTCTCCAATTGGATAATTTTGAACGACGTGATCCATGAGTATCGCTGGCATTcgttctctgaa------a-a--attttgaaatacattGCTCTATGATTC--------TTATTTTTGCCA---TACATTCTGtcaaacaactcaaaattAGATGTCGGAGTAAAATAAGGAAGGAAGTCTCCTTCGAATGATCCCAACTCATAGAGTGTATGCGTTACGTCACTTCCCTGTAAGGATTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     33176 408 +   141584 ACCTACCTCAATTTGACTTTTACCCTTTCTTCCTCGAACTCCTTCTGCTAAAGTCATCTGAACCGTATGATCTTCATTGACAAGAAGCCAAGCACTCATTGCAGAATACTCGGAAGTGGCAACTTTATCATCTACAGACCAGAAcctcttcaatttcatcgTTTTGTAGTACCAATCGGCAgctttctccatttctccaatcggataattttgaacaaCGTGATCCAATAATATAGCTGGCATTCTttggctgaa------a-attatttttaaatttaa-----taaCATTTC-------GATCTTTGTTTATATTACACTCTTTTGAAAAGCTCGAAATTAGGTGACGGTGAGAAATAAGGGAGGAAGCTTCCTTTGAATTGTTTTAGCTCATAGAGCGTATGTGTGACATCACTTCCCTATAA------A
i caeSp111.Scaffold567  I 48 C 0
s caePb3.Scfld02_0       3438768 408 +  4147112 TCTCACCTCAATTTGACTTTTGCCTTTTCTCCCCCTGACACCTTCTGCTAACGTCATTTGAACCGTATGATCTTCATTCACGAGAAGCCACGCACTCATTGCAGAGAACTCCGAAGTGGCGACCTTGTCATCCACAGACCAGaaccttttcagtttcatcgtTTTGTAATACCAATCGGCGGCCGCCTCCATTTCCCCAATAGGATAATTCTGGACTACATGGTCCATGAGAATCGCTGGCATTTTCTCActgga------a-a--actttca-----at-----tattatttctcTGGATGATCTTTGTCTACATTACATTCTATCAAACAACTCAAAATTAGTTGTCGGTGTGAAATAAGGAAGAAAATTCCCTTTGAATGCTCCCAACTCGTAGAGTGTATGTGTGACATCACTTCcctataa------t
i caePb3.Scfld02_0      I 89 C 0
s caeJap4.Scaffold17934   550632 412 +   591668 ACTCACTTCAATTTGGCTTTTACCTTTACGCCCTTTCACACCTTCTGCCAACGTCATCTGAACCGTGTGGTCCTCGTTCACAAGAAGCCAGGCACTCATTGCAGAATATTGCGATGTGGCGACTTTATCATCAACGGACCAGAACCTTTTAAGTTTCATGGTTTTGTAATACCAATCGGCGGCAGCTTCCATTTCTCCAACGGGATAGTTTTGGACTACATGATCCATTAGAATTGCGGGCACTTTTTCTCTGAATTATATA-A--ATATTCATTTGTAT---AAAAACATT---------GTTTTAGAAATCACTCACAATCTATCAAATAACTGGAAATTAGCAGTTGGCGTAAAATGTGGAAGGAACTCTCCCTTGAAATCATTTAGCTCGTACAATGTATGCGTAACATCGCTGCCCTGGAA------T
i caeJap4.Scaffold17934 C 0 I 22

a score=-1849.000000
s ce10.chrX              5157106 26 + 17718866 AAATTTATTA---CGTTGAGAATGATGTT
s cb4.chrX              10492210 16 + 21540570 atttttctat---attt----------tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1982189 22 -  4500979 AATTATCtct---cgtttcaaaa----tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     33584 22 +   141584 AATagttcat---atttttgaat----tt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3439176 25 +  4147112 aatttttttttcaatttcaaaaa----tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   551044 22 +   591668 I

a score=99077.000000
s ce10.chrX              5157132 116 + 17718866 ACAGAGT-------TTTTG--GTACCTCTGAAAGCAACGTCGCTGTCCGCACTAATCCATCTTTTGTGCTGACTTCACTTTGTTGAATTACCTTGATGTCATTTTCCACCAAGTTCTGAAATAAA
s cb4.chrX              10492226 123 + 21540570 tcgaaacgcGTGTATTTCG--TTACATCAGCAAGTAGTGTGGCCGTTCGAACTAATCCCTCCTTTGTCTTGATTTCTCCCTGTTGAATAACTTTGATGTCATTTTCCATCAAGTTCTGAAATAGA
i cb4.chrX              C 0 I 714
s caeRem4.Crem_Contig0   1982211 116 -  4500979 ttgaaat-------tttcg--ttaCATCAGCTAGTAGAGTGGCTGTTCTAACTAATCCTTCCTTTGTGTTGATCTCTCCTTGTTGAATTACCTTGATGTCATTTTCCATCAAGTTCTGAAATAAC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     33606 116 +   141584 cgttATC-------TTTCG--TTACATCTGCAAGCAGTTTAGCTGTTCTCACTAATCCTGCCTTGGAGTTAATTTCTCCTTGTTGAATAACCTTGATGTCATTTTCCAACAAgctctgaaataaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3439201 116 +  4147112 cacgaAA-------CTCCG--TTACATCTGCAAGTAGAGTAGCAGTTCTCACTAATCCTTCTTTTGTGTTGATTTCGCCTTGTTCAATTACCCTGATGTCATTTTCCATCaagttctgaaataaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   551066 118 +   591668 ATAAAGT-------TTTTGGTTTACTTCTGCTAGCAAAGTTGCAGTGCGAACTAATCCTTCTTTTGTGTTGATTTCACCTTGTTGAATAACTTTGATGTCATTTTCCATCAAgttctgaaagaaa
i caeJap4.Scaffold17934 I 22 I 407

a score=5258.000000
s ce10.chrX              5157248 52 + 17718866 -CTATTTGACATAGAATTACACATAAACTTTGTCAAATTTAAATCACCTGCAA
s caeRem4.Crem_Contig0   1982328 49 -  4500979 -AAATTCGGCTGAGATTATTA---AAACCCCGCAAAGTTCAAGTCACCTGCAA
i caeRem4.Crem_Contig0  I 1 I 786
s caeSp111.Scaffold567     33722 49 +   141584 ttagttgtgctgaaaatgac----aaaCTGCTTAAAGTTCATGTCACCTGCAA
i caeSp111.Scaffold567  C 0 I 402
s caePb3.Scfld02_0       3439317 48 +  4147112 attatt-cattGTAAATGAC----AAAACAGGAGAAGTTCAGGGCACCTGCAA
i caePb3.Scfld02_0      C 0 I 1430
e caeJap4.Scaffold17934   551184 407 +   591668 I
e cb4.chrX              10492349 714 + 21540570 I

a score=0.000000
s ce10.chrX              5157300 1060 + 17718866  
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184  407 +   591668 I
e cb4.chrX              10492349  714 + 21540570 I
e caeSp111.Scaffold567     33771  402 +   141584 I
e caeRem4.Crem_Contig0   1982377  786 -  4500979 I

a score=4090.000000
s ce10.chrX              5158360 170 + 17718866 TTAAAGGTCCCAGAAATAGGTTCGTT-TGCATTTCATCTTCTGAATGCAAAAAATTCTGTTGAGCACAAACCAAGAAATGATTTCATTATTTAATTTTTGAA----------------------------------CACTTGTCTTTT----------------TGAACTTTTAGAT----AATTAAGCTTATTACATTGATGGTAAACACCAGGTGATCGAGat
s caeSp111.Scaffold567     34173 221 +   141584 TTTAAGCTGTGAGATGTAGGTTccttattcttttcatttttcggg-aTACAAAACGCTACTGAGCATacaccaaaaaatgatttcattatTTAATATTTGCAGTTGAACATATCGAACCTCACGTATTTTATTGTGTATTTGTTTTCTGCCTGATTTCATGTTCTGAACTTCTAGAACGAAGATTAAGTTTGA-ACATGTAT--TAGACACCAGGTGATTGATAT
i caeSp111.Scaffold567  I 402 I 24
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184 407 +   591668 I
e cb4.chrX              10492349 714 + 21540570 I
e caeRem4.Crem_Contig0   1982377 786 -  4500979 I

a score=0.000000
s ce10.chrX              5158530 27 + 17718866 ttttttctaattttaattttttcttaa
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184 407 +   591668 I
e cb4.chrX              10492349 714 + 21540570 I
e caeSp111.Scaffold567     34394 24 +   141584 I
e caeRem4.Crem_Contig0   1982377 786 -  4500979 I

a score=401.000000
s ce10.chrX              5158557 8 + 17718866 aaaatgtc
s cb4.chrX              10493063 8 + 21540570 AAAATAAC
i cb4.chrX              I 714 C 0
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184 407 +   591668 I
e caeSp111.Scaffold567     34394 24 +   141584 I
e caeRem4.Crem_Contig0   1982377 786 -  4500979 I

a score=-2852.000000
s ce10.chrX              5158565 49 + 17718866 ttttaaata-aaaaatattttaaCTTGT--TTACTGAAATTTT----GAGTGATCT----------
s cb4.chrX              10493071 49 + 21540570 -----GACTTAATCATAt------------gtatttaattttttctgttgtgaTTTAGCACATCCA
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold567     34418 61 +   141584 TTTTAGATATATTAACATTTCACCTTGCACGTGGtcaactttt----ttggattatgggaaataa-
i caeSp111.Scaffold567  I 24 C 0
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184 407 +   591668 I
e caeRem4.Crem_Contig0   1982377 786 -  4500979 I

a score=191.000000
s ce10.chrX              5158614 2 + 17718866 -TC
s cb4.chrX              10493121 2 + 21540570 -TA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   1983163 2 -  4500979 -tc
i caeRem4.Crem_Contig0  I 786 C 0
s caeSp111.Scaffold567     34479 3 +   141584 tta
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3439365 1430 +  4147112 I
e caeJap4.Scaffold17934   551184 407 +   591668 I

a score=-2360.000000
s ce10.chrX              5158616 5 + 17718866 --AA-AAA
s cb4.chrX              10493123 6 + 21540570 --AATATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1983165 5 -  4500979 --aa-aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34482 3 +   141584 --ga-a--
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   551591 5 +   591668 AGAA-A--
i caeJap4.Scaffold17934 I 407 C 0
e caePb3.Scfld02_0       3439365 1430 +  4147112 I

a score=103680.000000
s ce10.chrX              5158621 145 + 17718866 TAAAACCAC----------ACAAATCTACCTGTAAAACTGCATCCAAATTATCGACTCGAAATGAAACGTCTTTTATGAAATCCCCGTGTTTGATTAACTGGTCGGTGTAGATGTTTTGTGAGTTGTATGAAGTGATAATGACGCGGGCCTGTAA
s cb4.chrX              10493129 135 + 21540570 -------------------AGAAATC-ACCTGTAAAACGCCATCTAGGAAGTCAACACGGAATGCGACGTCTTTGATGAAATCCCCATGTTTGATAAGCTGTTCCGTGTAGACGTTAGCACAATTGTACGACGTAATGATAACGCGAGCCTGAAA
i cb4.chrX              C 0 I 183
s caeRem4.Crem_Contig0   1983170 135 -  4500979 -------------------aaaaatc-acctGCAAAACTCCATCCAAATTATCAACACGGAAAGCAACGTCTTTGATGAAATCTCCGTGTTTGATCAATTGGTCAGTATACATATTCTGAGCATTGTATGAAGTGATGATAACACGAGcctaaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold567     34485 138 +   141584 ---------------taa-aGTTATC-ACCTGTAGAACTCCATCCAAATTGTCAACACGAAAAGCGACGTCTTTAATGAAGTCTCCATGTTTCACCAACTGGTCAGTATATATGTTTTGAACATGGTACGATGTAATGATAATGCGAGCCTAAAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3440795 154 +  4147112 TGAAAACACACATTATAATAGAAATC-ACCTGTAAAACTCCATCCAAATTGTCAACACGGAAGGCAACGTCCTTGATAAAATCACCATGCTTAATCAACTGGTCGGTATAGACATTTTGAGTGTTATATGAAGTTATGATAACTCGagcctaaaa
i caePb3.Scfld02_0      I 1430 C 0
s caeJap4.Scaffold17934   551596 150 +   591668 TAAGACCAGGACCTA----TTTAATC-ACCTGCAGAACTTGGTTCAAAAAGTCAACTCGAAAAGCGACATCTTTGATAAAATCTCCATGCTTTTTCAATTGCTCGGTGTAAATATTCTGGCAATTGTAGGACGTGATGATGACTCTGGCCTGAAA
i caeJap4.Scaffold17934 C 0 C 0

a score=54.000000
s ce10.chrX              5158766 1 + 17718866 T
s caeRem4.Crem_Contig0   1983306 1 -  4500979 t
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold567     34623 1 +   141584 T
i caeSp111.Scaffold567  C 0 I 142
s caePb3.Scfld02_0       3440949 1 +  4147112 a
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17934   551746 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10493264 183 + 21540570 I

a score=2169.000000
s ce10.chrX              5158767 5 + 17718866 TGAAT
s caeRem4.Crem_Contig0   1983307 5 -  4500979 tgaat
i caeRem4.Crem_Contig0  C 0 I 159
s caePb3.Scfld02_0       3440951 5 +  4147112 tgaat
i caePb3.Scfld02_0      I 1 I 140
s caeJap4.Scaffold17934   551747 5 +   591668 TGCAT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10493264 183 + 21540570 I
e caeSp111.Scaffold567     34624 142 +   141584 I

a score=187.000000
s ce10.chrX              5158772 8 + 17718866 ATATTTTT
s caeJap4.Scaffold17934   551752 8 +   591668 ACTGTTTT
i caeJap4.Scaffold17934 C 0 I 337
e caePb3.Scfld02_0       3440956 140 +  4147112 I
e cb4.chrX              10493264 183 + 21540570 I
e caeSp111.Scaffold567     34624 142 +   141584 I
e caeRem4.Crem_Contig0   1983312 159 -  4500979 I

a score=0.000000
s ce10.chrX              5158780 677 + 17718866  
e caePb3.Scfld02_0       3440956 140 +  4147112 I
e caeJap4.Scaffold17934   551760 337 +   591668 I
e cb4.chrX              10493264 183 + 21540570 I
e caeSp111.Scaffold567     34624 142 +   141584 I
e caeRem4.Crem_Contig0   1983312 159 -  4500979 I

a score=91.000000
s ce10.chrX              5159457 1 + 17718866 A
s caeJap4.Scaffold17934   552097 1 +   591668 a
i caeJap4.Scaffold17934 I 337 C 0
e caePb3.Scfld02_0       3440956 140 +  4147112 I
e cb4.chrX              10493264 183 + 21540570 I
e caeSp111.Scaffold567     34624 142 +   141584 I
e caeRem4.Crem_Contig0   1983312 159 -  4500979 I

a score=746.000000
s ce10.chrX              5159458 15 + 17718866 AACACATAATAAAAG
s cb4.chrX              10493447 15 + 21540570 AACACCCCAAAAACT
i cb4.chrX              I 183 C 0
s caeJap4.Scaffold17934   552098 15 +   591668 aacaacTAACTAATT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3440956 140 +  4147112 I
e caeSp111.Scaffold567     34624 142 +   141584 I
e caeRem4.Crem_Contig0   1983312 159 -  4500979 I

a score=422.000000
s ce10.chrX              5159473 1 + 17718866 A
s cb4.chrX              10493462 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1983471 1 -  4500979 A
i caeRem4.Crem_Contig0  I 159 C 0
s caeSp111.Scaffold567     34766 1 +   141584 A
i caeSp111.Scaffold567  I 142 C 0
s caeJap4.Scaffold17934   552113 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3440956 140 +  4147112 I

a score=139100.000000
s ce10.chrX              5159474 163 + 17718866 ACCCACTGTTCCATTTCTTAACGCAATGCTTGTAGATTCATCTGTTATTTTTTCTGCAAACTTTTCGAAACCAAAACCACTACAATACCAGTACGCACTCTGCAGTGCATTTGATACAATAAACTCGATGTGATGAATTGCAGAAATTGAACCCATCTGCAAT-
s cb4.chrX              10493463 163 + 21540570 ACTAACcgttccatttttcaatgcGTAACTTGTCGAGACTTCCGTGTTCCTTTCTGCAAACTTTTGGAATCCAAAACTGCTGCAATACCAATAAGCGGACTGTAGCGCGTTGGAGACAATAAACTCTATATGGTGAATTGCAGAAATAGAACCCATCTGAAAG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1983472 162 -  4500979 ACCAACCTTTCCATTTCTCAATGCGTAACTTGTTGAAACTTCCGTGTTTTTCGCtgcgaatttttcgaaaccaaaACTGCTACAATACCAGTAGGCTGACTGTAGTGCATTAGAAACAATGAATTCAATGTGATGAATCGCAGAAATTGTACccatctgcaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34767 162 +   141584 ACTTaccattccatttttcaaagcatAACTCGTGGAGTCTTTCGTTATCTTTTCCGCgaacttttcaaaaccaaagCTGCTACAATACCAATAGGCAGATTGTAGTGCATTAGAAACAATGAATTCAATATGATGAATAGCAGATATTGAGCTCATCTGTAA--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3441096 162 +  4147112 ACTAACCGTTCCGTTTTTCAAGGCATAGCTAGTTGATTCTTCTGTGTTTCTTTCCGCGAACTTCTCGAATCCAAAACTGCTACAGTACCAGTAGGCTGATTGTAAGGCATTAGACACAATAAATTCAATATGATGTATAGCGGAAATAGAAcccatctgaaa--
i caePb3.Scfld02_0      I 140 C 0
s caeJap4.Scaffold17934   552114 163 +   591668 ACTAACCGTTCCATTTCTCAGCGCTATACTCGTTGACTCCTTTGTTCTTCTCTCTGCAAACTTCTCGAACCCAAAACTGCTACAATACCAGTAGGCGGATTGTAAGGCATTTGAAACTATAAACTCTATGTGGTGAATTGTAGATATTAAACCCATCTGCAA-T
i caeJap4.Scaffold17934 C 0 I 1376

a score=11239.000000
s ce10.chrX              5159637 155 + 17718866 ATACAAAAAT----GATGCAAATTG-----AAAAAAA-----AACTGACTACATCATA-----CAGAAAAGGACCA---------------------------------AACTGAGC---A-TGAGAAATCGTGTCGGTATATGGTATTTTATAGACGTTATTTTATGACTAG--GGTTTTGATGGTCGTTTGATATG-ATGATAAGATATCAG
s cb4.chrX              10493626 159 + 21540570 GTTGTAGAAT----GTAACGTAGAG-----GAGAAGAATGCTAGATGATGAA-----------AAAGacaggaatagaaaaaaatggggcT-------------ACGCTAATTGAGCTGCAGAGGCAAATCTTATCT--------------------TCAGTTTTATGGCTCT--GGTTTTGGGGGTCGTTTGATGCGATTGATAAGATAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1983634 169 -  4500979 -----aaaat----gaactgaTACC-----ACTAAGAATCTCAAATGATGCAATTGTA---GGAAACGaggaaatagagagaaatagagacg-ATTGATACGAGACGCTAATTGAGC-----AGGGAAACCGTATCTC-------------------TGACTTTTATGACTTC--ACTTTTGGGGGTCGTTCGATGTG-TAGATAAGATACCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     34929 168 +   141584 -----AAAAT----GTCTTTAAAAG--TTAAATGAACATTACATATGATGCAATTGTT-----ATCGTAAGAAATA---------------GAACTTAGATAAGACATTAATTGAGCTGTA-AGGAAAGTC-TATCTTGATTTGATA----------TGGGTTTTATGACTTC--AGTTTTGGGGGTCGTTCGATATG-TTGATAAGATACTAG
i caeSp111.Scaffold567  C 0 I 1545
s caePb3.Scfld02_0       3441258 203 +  4147112 ttttcgaaatagaagACTATGAAAGAATTaggtaaaaaaatgaaatgatgcaattttttccaaagcctcaaaaacaaaagtgaatgggaggaaaataaaaagaaacgtTAATTGAGCTGCA-GGAAACCCCGTATCTCGATTTTATA---------CTGTTTTTTACGACTGCCTAGATTTGGGGGTCGTTTGATGTG-TTGATAAGATACCCG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17934   552277 1376 +   591668 I

a score=109.000000
s ce10.chrX              5159792 5 + 17718866 TAGTT
s cb4.chrX              10493785 5 + 21540570 GAGTT
i cb4.chrX              C 0 I 464
s caeRem4.Crem_Contig0   1983803 5 -  4500979 GTTCT
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3441462 5 +  4147112 TTGTT
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=3445.000000
s ce10.chrX              5159797 40 + 17718866 --GAGATAATGGATGTGTGTAGGTCATTGCGGTGTTGTAATG
s caeRem4.Crem_Contig0   1983809 40 -  4500979 CAGAGATAGATAC--TGTGTAGGTCAATGTATTCTCGTAGTG
i caeRem4.Crem_Contig0  I 1 I 540
s caePb3.Scfld02_0       3441467 38 +  4147112 --CAGGTGTAAGA--TGTGTAGGTCATTTTATTGGTGTAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=27.000000
s ce10.chrX              5159837 10 + 17718866 CCAAGAGCAA
s caePb3.Scfld02_0       3441505 10 +  4147112 GGAAAAGGGA
i caePb3.Scfld02_0      C 0 I 63
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1983849 540 -  4500979 I

a score=0.000000
s ce10.chrX              5159847 55 + 17718866 TGCCAATATTGTGGATGAGACATTTGAGATGGAGTTAAAACTAAAATGGTATCAC
e caePb3.Scfld02_0       3441515 63 +  4147112 I
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1983849 540 -  4500979 I

a score=-191.000000
s ce10.chrX              5159902 150 + 17718866 GTATGCAAATAATT----------ATTGAAGATAAAATTTTCAAAGATGCAATTTTTCCAATAA--------------------TTGATACTACCTGTTTTGGTAACTTACTGAAACGATTTGT-----AAATTATTAATTAATG-------------------------AAATTAACTTTAAGTGCACTGTC--ACAAATTCAAATAGCTT
s caePb3.Scfld02_0       3441578 210 +  4147112 GTTGGCATAGAATTCACTTAATGCATTCATTTTAAAACTTCCGC--ATGGATTTTTTCCCatgagttttttctgaactaaGTTCTCGCTATTCCACTTTCTAATTACTTATTCAAAAGGTTTCTCTCACAATCTTTTCATAAATGTCACTGCATAAAAAGTTTCTTATAAAGATTCATCATGCGTGTTCCATTGGAAAGATATGAATAATTT
i caePb3.Scfld02_0      I 63 C 0
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1983849 540 -  4500979 I

a score=-608.000000
s ce10.chrX              5160052 1 + 17718866 --------G
s caeRem4.Crem_Contig0   1984389 1 -  4500979 --------g
i caeRem4.Crem_Contig0  I 540 C 0
s caePb3.Scfld02_0       3441788 9 +  4147112 GCTCACATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   552277 1376 +   591668 I
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=582.000000
s ce10.chrX              5160053 4 + 17718866 AATA
s caeRem4.Crem_Contig0   1984390 4 -  4500979 aaga
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       3441797 4 +  4147112 tata
i caePb3.Scfld02_0      C 0 I 87
s caeJap4.Scaffold17934   553653 4 +   591668 aaaa
i caeJap4.Scaffold17934 I 1376 C 0
e cb4.chrX              10493790 464 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=34308.000000
s ce10.chrX              5160057 156 + 17718866 AACAAAAATACAATTGAGTGAAAAAATGAAACTTTGAAA-GAAACTATAAAGACGC---GCCAAAT----TCTTATCAAGTTGTGATGGTCGGGGGTAGAGTCTGTGT-------ATCGATGCAACACTATAAAGAACACCCA---TCCTT------TTGTAAAACCTGATTTGGAAAAA
s cb4.chrX              10494254 171 + 21540570 acaatcaaaataatcac-taaagaagagaaaCTTTGCGGCGAAACAGTTTTAATTTGCGGGCAATTCCCGTCTTATCAGATTGTGATGGTCTGCAGTA-----TGTGTG---GAGAATGATACAACGCTATAAAGAACACCCAGCGTCTTTTTTCCCTTCGAGAACctgaattgagaaaa
i cb4.chrX              I 464 I 2130
s caeRem4.Crem_Contig0   1984399 150 -  4500979 aaaataaaaataatca---gaaaaaaagaaactttgcGA-GAAACCATTTCAATGC---gacattt----tcttatcaaaGTGTGATAGGTGAAGGTC-----TGTGT-------ATTGAAGAGACGCTATAAAGAACACCCA---tctcttt----ttggaaaaccTGATTTGTAAAAC
i caeRem4.Crem_Contig0  I 5 I 1071
s caePb3.Scfld02_0       3441888 154 +  4147112 aaaataaaaatagtcg--TTTGGAAATGAAACTTTGCGTGGAAACCATTTCAATGC--GGGCAATC----TCTTATCAGATTGTGATGGTAAGGTCTA-----TGTGTGTGTTGGAAGAGAGAGACGCTATAAAGAACACCCA---TCCTTT-----TTAGAAAACCTGATTTGT-----
i caePb3.Scfld02_0      I 87 C 0
s caeJap4.Scaffold17934   553657 146 +   591668 aacaaaagaacaaaga---aaggaaacaaaactttgaaa-agaacTACCCGCAGAA---GTCATTCGT--TCTTATCA------GTTGGTCGGGCCTT-----TGCGT----CGAAATGAAAAGACACTATAAAGAACACCCA---TCTT-------TATGAAAACTTGGTTTGCGAAAG
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=100.000000
s ce10.chrX              5160213 1 + 17718866 G
s caeJap4.Scaffold17934   553803 1 +   591668 G
i caeJap4.Scaffold17934 C 0 I 2286
e caePb3.Scfld02_0       3442042 0 +  4147112 C
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1984549 1071 -  4500979 I

a score=0.000000
s ce10.chrX              5160214 2 + 17718866 GA
e caePb3.Scfld02_0       3442042 0 +  4147112 C
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1984549 1071 -  4500979 I

a score=1147.000000
s ce10.chrX              5160216 23 + 17718866 AGAAGTGATCTGTTTCT-GTGTTT
s caePb3.Scfld02_0       3442042 23 +  4147112 -GAAATGATCAGTTTCCAGTGTTT
i caePb3.Scfld02_0      C 0 I 931
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1984549 1071 -  4500979 I

a score=0.000000
s ce10.chrX              5160239 1827 + 17718866  
e caePb3.Scfld02_0       3442065  931 +  4147112 I
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1984549 1071 -  4500979 I

a score=1147.000000
s ce10.chrX              5162066 22 + 17718866 TCAGATCATAGATTAGGCCCTC
s caePb3.Scfld02_0       3442996 22 +  4147112 TCAGGTCATAGATTATGCTTCG
i caePb3.Scfld02_0      I 931 C 0
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I
e caeRem4.Crem_Contig0   1984549 1071 -  4500979 I

a score=38.000000
s ce10.chrX              5162088 1 + 17718866 C
s caeRem4.Crem_Contig0   1985620 1 -  4500979 C
i caeRem4.Crem_Contig0  I 1071 C 0
s caePb3.Scfld02_0       3443018 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 23
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     35097 1545 +   141584 I

a score=47767.000000
s ce10.chrX              5162089 459 + 17718866  
s caeRem4.Crem_Contig0   1985621 564 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     36642 521 +   141584  
i caeSp111.Scaffold567  I 1545 I 13
s caePb3.Scfld02_0       3443042 513 +  4147112  
i caePb3.Scfld02_0      I 23 I 124
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=-7303.000000
s ce10.chrX              5162548  83 + 17718866 ----------------------------------------------GTTTCGAGCCGTTGT-----------ACTTTTTTTATTTTTGTACTTTCTCTCAAGCATATCATAGTATTATACGTAATGCT----TTCCTTTTCTTA-----
s caeRem4.Crem_Contig0   1986185 149 -  4500979 tgctgaatttttatatttttgtataCACTGTGAAATATATCTCACAATTTCAGTACCGTATGACACAGACAAGTGTTTCTGGTTTCTGTACTCTAAATCTAGAATATTCTAGGATTGTGTGTGTGGTAGTTAATTCATACCTAAAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37176  66 +   141584 -------gtttcat---------------------------tcaaaagttccACCTTTTAT-------ATTAGTTattatgttttttattccat--------------------------------------atttctttctgaa----
i caeSp111.Scaffold567  I 13 C 0
e caePb3.Scfld02_0       3443555 124 +  4147112 I
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=-4199.000000
s ce10.chrX              5162631 91 + 17718866 ACCGAAAAAAATGAATGAGAATAAATA-------ATATGGTTTT---AGTAATTGGATCCTTT--GCTA--TTTTTGAGTTAGA---CTATATTAATAATGTGTACCA
s caeRem4.Crem_Contig0   1986334 73 -  4500979 GGTG----AAGAGAATGTATATGAATAAT-----ATACAATGGA---AGAAATATGAtatttt--ctcctatttttgagttaaa---cCA------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37242 86 +   141584 --------tatGGGCT--AAGTGAATAGTCAGAAATACGGTGAAAACAGTAATTTGATACGTTTGTTCC--ATGTTCAGTTAGA---CCTCT-------TTTACACCT
i caeSp111.Scaffold567  C 0 I 7
s caePb3.Scfld02_0       3443679 88 +  4147112 AATGcaaacaaaaacttcgaatGAATAAT-----ATACAGTTGG---TGTAATCTGATATATT--TTCC-------TAGCTAGAGGGTCTCT---AGTATTCGTACCT
i caePb3.Scfld02_0      I 124 I 73
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=-3831.000000
s ce10.chrX              5162722 60 + 17718866 GTGAATATGG-----------ATGTTATTTTCATCATCGGACACCTCGGTT-----TTGAATTATGACGGGCCAGG-----------
s caeRem4.Crem_Contig0   1986407 63 -  4500979 ----AGACGAAATATCTTTTCACGTCAATTC---------ACACCTAGTACTGGCATTGAATTTTTCGGGACGAAG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37335 50 +   141584 ---------------------GCGTTACTT----------ATTCTTTGGATTG---TTGAATTCTT---GATTAATGTTGATATTCT
i caeSp111.Scaffold567  I 7 I 2
e caePb3.Scfld02_0       3443767 73 +  4147112 I
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=-6328.000000
s ce10.chrX              5162782 129 + 17718866 ---------------------------TTCAAACCCCCATTCA--------GTTTAATTATTCAATGTTTTGATGTCAAGA-TTCTTGTCAGAATTTCTACCAT-AGTCAAAGCTGACATTCAAAAGACTCCAT----------TTTAGA----TAATTTGCCAAAATTATA-GGTAT------TTA-----------------------------
s caeRem4.Crem_Contig0   1986470 207 -  4500979 AATTCATAATGAGTGTTTTAATTGTTCCTGAGGGTTATA-ATATCTGACGAATCCAATCGTCTATTGCCGTGTTGTTGTga-ccattt------cttttttgacgaGAAGAACCTGACATTTCAAGCATCCAATTTTTACTTGTTATTGTTGC-TCACGCCTCATAATTACATGATACAGAATACAGAGAAAATCTAAGAAATTTGTCTCAAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37387 138 +   141584 ---------------------------CTGAAGACTATA-GTC-------AATTCAATCCTCTTCC----TGTTGTTTAGAGGCGTCttcgaaattattttgacAAG--TAACCTGACATTTGAAGCCTTCAAT-TCCTCTTGTTTTTGCCAA-TCGAGCCTCATAATTACATAATAC------CAG-----------------------------
i caeSp111.Scaffold567  I 2 I 40
s caePb3.Scfld02_0       3443840 129 +  4147112 ---------------------------CTGGAGCCTCC---CA-------AATTCAATCATCCAACACGTTGTTGTTTAGC-ACGTCTTctatattttcatgaa------aacctGACATTTGAAG----CAAT----ACTTGTTTTTGAGAGCTCATTCTTCATAATTACACAGTAC------TAA-----------------------------
i caePb3.Scfld02_0      I 73 C 0
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=-162.000000
s ce10.chrX              5162911 23 + 17718866 CCGTGAT-------------ATTTAGTT------------------------TACTGACG
s caeRem4.Crem_Contig0   1986677 28 -  4500979 -CATAGT-------------ATTTAATTCGAAAT------------------TACTGacg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3443969 58 +  4147112 --ATGGTGAAAAGCACTGTCATTTTGTTCTAATCATACATTCTAATGGTATATACTGACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     37525 40 +   141584 I

a score=-6316.000000
s ce10.chrX              5162934 26 + 17718866 -----------------TCTCATGTGTTTCAAAA--ACGCTTC--CT
s caeRem4.Crem_Contig0   1986705 45 -  4500979 tttttcttgtttccgtGTTGTATCAGACTTAATTCTCCGCCTCTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37565 25 +   141584 -----------------TCTCACCGAATTCAACT-GACGTTTC----
i caeSp111.Scaffold567  I 40 C 0
s caePb3.Scfld02_0       3444027  7 +  4147112 ------------------------------------TTGTTTC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   553804 2286 +   591668 I
e cb4.chrX              10494425 2130 + 21540570 I

a score=282.000000
s ce10.chrX              5162960 3 + 17718866 CAA
s caeJap4.Scaffold17934   556090 3 +   591668 CAA
i caeJap4.Scaffold17934 I 2286 C 0
e caePb3.Scfld02_0       3444034 0 +  4147112 C
e cb4.chrX              10494425 2130 + 21540570 I
e caeSp111.Scaffold567     37590 0 +   141584 C
e caeRem4.Crem_Contig0   1986750 0 -  4500979 C

a score=51214.000000
s ce10.chrX              5162963 196 + 17718866 TCTC-GTTCATATTTTTCTTGATC----------------------ATTTTTCT---------------TTTTTTGTATGTAGGTAAGAAA-------TTTTCAGATGTCGCCAAACATGTTCGGACTTGTGTTCTTCCTCATCGTCGCTGTTGCACAAGCATCCCTGTTCCTTGATGAGAATAGCAGAGTGATGGCTCAGCCAGAGAGT---GTTGGATCCTATGTTA---------CTGAGTGAGTTT-----------------------------------------------TTG
s cb4.chrX              10496555 226 + 21540570 tcta-attttcttccCGTTTCAGT-----------------------TTTCTCG------------------------GATATTCAGGCAA-------ATTTCAGATGTCGCCCAACATGTCAGTACTTGTGCTCATTATGATCTTTGCCGTTGCTCAAGCAGCGTTGTTCATCGATGGCGACAATAAAATTGTCGCCAGGACCAACGATCAGTTCGGACCATATGTCT---------CCGAGTGAGTTAAACATTCATCTGCAGATTTCA----------TCAGATTTCGAAATCCTTC
i cb4.chrX              I 2130 C 0
s caeRem4.Crem_Contig0   1986750 210 -  4500979 TTTC-ATTCTTACCCACTTTCAAC----------------------ACTTCTCa-----------------------------tgaaactg-------ttttcagatgtcgTCTAGCATGTCCGGACTTGTGCTCATTCTGATCGTTGCTGTTGCTCATGCAGCTCTGTTCATCGACGATGATAACAAGATGGTGGCTAAGACGAACAACCAATTTGGCCCATATGTCG---------CAGAGTaagccg-------attttcagattctt----------atAGATTTA-----CATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37590 230 +   141584 TCTT-GCtcatattt-ctttcttctgctCTGACTCCGCCCC----AATTTCTCA-----------------CTTTGTATTCAGTCAGAcag------tttttcagatgtcGCCTAACATGTCCGGACTTGTGCTCCTTCTGATTGTCGCTATTGCGCAAGCTGCCCTGTTCATTGATGACGATGGCAAGATGGTTGCCAAGACAAACAACCAGTTCGGTCCTTATGTCA---------CCGAGTAAGCCG-------ATTTT---ACTCTT----------------------AGATTTA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444034 270 +  4147112 TCTCAATTCATATCCGCTTTCtatta----gactccgcccc---ttatTTCTCAATCCAATTTCGCTTCTGATCTTTCTTCAAGTAGACAG-------TTTTCAGATGTCGTTGAAAATGTCCGGACTTGTGCTCCTTATGATTCTTGCTGTCGCCCAAGCGGCTCTTTTCATCGATGACGAGAGCAAGATGGTCGCCAAGACAAACAACCAGTTCAGCCCGTACGTCT---------CGGAGtaagttc-------tttttcaaattgtttagGAACAGATTGGATTTCGAAAGACTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   556093 221 +   591668 -----TTTCTTGCAAACTTTTATC------TATACGAATCCATATTATCACtca------------------ttcgtgaacacataaaaaatataaatcaTTCAGATGTCACTCAGTATGTCCGGACTTGTGCTCCTCGTTCTAATCACTGTCGTGCAAGCAGCCTTGCTTCTTAACGACGAGAACAAAGCAAT---TCAATCGGTAGACTCATTTGGAAACTTTTTCATTGTCCCATCTGAGTaagatt-------ttt----------------------------------------
i caeJap4.Scaffold17934 C 0 I 27

a score=-16684.000000
s ce10.chrX              5163159 27 + 17718866 TAACCC-----------------------------CTAGACGTATTATATATA----------------------CTC
s cb4.chrX              10496781 34 + 21540570 TGACGTTTCCGCAagact-----------------tttgg-----aatttcta----------------------ctT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1986960 78 -  4500979 AGACGTGTTATTAGAAATagataggaggtgatcgattTGGTAGATGATTTTTAACAAGACCATAGATGTTAAGGTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37820 41 +   141584 TAGT---------AAAATAG---------------TCAGATAgctaatttttg-------------tttttggatttt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444304 21 +  4147112 TAGC-------------------------------TCAAAGTCCCAATTTCC--------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556314 27 +   591668 I

a score=108669.000000
s ce10.chrX              5163186 269 + 17718866 GAT----------------------AAT-----------------ATTTTCAGTCTGGATAAGCTGAAAAGGTCGTTTGGACGCAATTGTATGCTAGCCATCTCCGGATGCTTCACCTCGTCGCAGGCCGAACGATATAGAAAATACATGGACAATGTGCGATTTATTCCGAAATGAATATGAAATT---CGAATCATTTTTTCTTCCATAA-AACA-----TCTGGCTGGTTT----TTTCTCGAAT-------Ctttaatttatta--tt--------ttttataCCTCTCCTATATAAAAAGGCTTGTGTATTATGCTAGACCCTAGTTATCTAC
s cb4.chrX              10496815 290 + 21540570 CATGCC-----------CTAATCTCCAC-----------------ATTTCCAGACTCGACAAGCTGAAGAGATCTTTCGGGCGCAACTGTATGTTCACCATCTCGGGTTGCTTCACGTCTTCACAGGCGGAACGCTATCGCAAATACATGGAAAATGTCAATTTCATTCCAAAGTAAATACCATCCTGTCTATGAACCAAC--------AAA-AACAAACCCTCCATCCCGAT--------TGCAAAACAATGATCTCTCACAAATTA--atttatttc-tctttttctcatactAAATAAGAATTTTCGTGTATCCTGCTAGCCTCTAGTATTGTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1987038 304 -  4500979 CATTCCATCAATGCAATCTAATCTGAATATTTATAACAAAAGTTAATTTCCAGAATCGATAAACTGAAAAGGTCGTTCGGTCGCAACTGCATGTTCACCATCTCGGGTTGCTTCACTTCATCGCAAGCAGAACGCTATCGAAAATACATGGAAAACGTCAGATTCATCCCAAAGTAATTTGAACACT---CAGAACCCTTC--------AAA-AACA-----TCTGGCCGGTTT----TGCTGCAAAA-------CTCACATTTATCA--ACCGATCTCAtctatttttgattc-aaataaGAATGTTCGTGTATCCTGCTAGTTTC---TGCtttac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     37861 290 +   141584 ggt--------------GAAATCCAGAT-----GATCatgttctgtttttcagattagaCAAGCTGAAGAGGTCATTCGGACGAAACTGTATGTTCACCATCACAGGATGTTTCACCTCTTCGCAAGCAGAACGTTATCGGAAATATATGGAGAACGTCAGATTCATTCCAAAGTGATTAGAA-CTT---TGGAACATTTC--------TTA-ACAA-----TCTGGCCGGTTA---ATTTTGcaaaa-------catttatttatttggTTCGATctcattt-gtatttttccgaaataaGAATGTTCGTGTATTATGCTAGATTCTAGTAATGTAC
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444325 279 +  4147112 -------------------CATACAAAT----------TTCTTTGTGTTTCAGACTCGACAAGTTGAAGAGATCGTTCGGACGCAACTGCATGTTCACCATCACAGGCTGCTTCACATCGTCTCAAGCCGAGCGTTATCGCAAGTACATGGAGAACGTCAGATTCATTCCTAAATGAGTTCCA-ACT---CCTATCTTTTC--------TCATACCA-----TCTGGCCGGTTGCACATT----AAAT-------GTTTCATTTACTC--CTTGATCTCATCTAATCTAATCTCAAAATAAGAATGTTCGTGTATTATGCTAGATTCTAGTAATGTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   556341 247 +   591668 ---------------------------------------agttctatttcaaGGTTGGACAAGTTGAAAAGGTCATTTGGACGTAATTGTGTGTTCACTATATCGGGCTGCTTCACGTCTTCGCAAGCCGAACGCTATCGCAAGTATATGGAAAACGTGCGATTCATACCGAAGCGAAGAC---GTT--------CCATTC--------CAG----------TCTGATCTgata----tttttcataa--------ttttattttttt--ttaaat--------atttaactac-aaaaataaatgttcGTGTATTATTCTAGTCTCGAGTAATGTGC
i caeJap4.Scaffold17934 I 27 I 3393

a score=7654.000000
s ce10.chrX              5163455  91 + 17718866 ------CGTCC-----CATTCTTTCTT------------------TTTCAAACT----------TTTATTGTCGTC---GCTCTCGGACA---------ACAAAATAATGAACCGAACTCTCCTTGTTAATCA----AATTG-----TTGT
s cb4.chrX              10497105 141 + 21540570 ATCAATTCTTTCGAGACGTTCTCTCTtagcccccccccctccctcccccACacaatctctttttcttctcattccc---ATTGTTCAAGACTcttgaaaacaacaaaatgaaCTGATCACTCC-TGTTAATCG----AACAAATG--TTGT
i cb4.chrX              C 0 I 2655
s caeRem4.Crem_Contig0   1987342 103 -  4500979 atcatttttct-------ttttgtttt-------tttcgtcaATTGTTCACACA--------------------cc---atcatttgaaa------aaaacaacaaaatgaacTGATCACTCC-TGTTAATCA----AACAATAGAATTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38151 111 +   141584 ATTAACTTtgt-----cattctt--tt--------ctctgcaTTCTTCCCAACT------ATTTGTTCTAATCATC---TTTGTCGGACA---------ACAACAAAATGAACTGATCACTCC-TGTTATCCAGCATAATA------TGAT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444604 117 +  4147112 ATTGACTTTGT-----CATCCTTTCtt--------gtcttctttctctcccaTT------AATCTTTATTgtctcctaattttttgaacaac----aacACAACAAAATGAATTGACCGCTCC-TGTTATTCA----AACA------TTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I

a score=-16718.000000
s ce10.chrX              5163546  54 + 17718866 -------------------------------GATCCAACACGATC-----AACTAGATTTAGAAA-------------------------TAAGCT--GTCTGGAGTAAATGATCAG
s caeRem4.Crem_Contig0   1987445 117 -  4500979 GATTATTTATACAATGTCTCAGAActgcaaaaagaaaacaagtcCCTTTGACTTCAAATATAAAACACTTGAATAATCCTAATGTTGTCTTATTATCAGTCTGGAGAAGATGAGCAG
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold567     38262  46 +   141584 ---CACTC-----------------------aatgaaaatggtttttggtA----------------------------------------AATCTc-attggaaaaaacaaa----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444721  92 +  4147112 ---CTTCTTCGTTATT-------------AAAAAGAAATTGGTTCTTGGCAGCTCGAGTTTGAAG-----AGATAAAGACAAAAGCCTGTTGATTTCAACATGATAATCCTGG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I

a score=-4979.000000
s ce10.chrX              5163600 60 + 17718866 CAAAAT-----------AGTTTATGGAAAC-----AAAACATAGAAA---------CCAATAACTCCGAGCACATCCTTTAGGTA
s caeSp111.Scaffold567     38308 74 +   141584 agtatt-----------tgttcagaaaaactcCAGAAAATCTGGATAATCCCCCTATGTGCTCCTTCCATCAGACTCATTAAATG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3444813 72 +  4147112 CGCATTATTTCATAATCAGTCTGGAACGGATGATCATAACCTATGTT---------TGCGGAGCATCAATTA----TCTGAGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeRem4.Crem_Contig0   1987562 34 -  4500979 I

a score=16858.000000
s ce10.chrX              5163660 137 + 17718866 ---------------------------------------------------------TGCCACTCAAGCAAACATC----TTA---GA-AG--ACCGATGTCTGATTTTTGA-ATTCTCGAAACAACTTCCTCGCCGTTTTAATTATGA-----------------AATCGATATGGTGTTTAATCGACTAATG-GATTCGAGGATAAGCAGATGAA---AAATGT-
s caeRem4.Crem_Contig0   1987596 156 -  4500979 -----------CGCCA-----------------------------------------CACAAC----ACAAACATC---ATGA---GATAGTAGACGATGTCTGATTTCTGATGTTTTTCTTG-AACTTCCTTCTTATTCCAATTATGGCTGACCAGC--------ACACAATAGCGTTTTTGATCGACCATTGAGATTTCGAAAGTGGCAGATGAATTCAAAATCT
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold567     38382 206 +   141584 TCTGTTCGGCTGATCAAACGAAATTTAGCAataattattcgaaaaagttcaaagcACTATCAC----ACATACATCAAGATGA---GA-AATTGACGATGTCTGATTTTTGGTGTTCTCAGCAGAACTTCCTTCTTATTTCAATTATGGGC-AGGGGC--------AAACCAGTGCAATTCTGGTCAACCAATAAGATTCGAGAAATGgcagatgaa---aaaagt-
i caeSp111.Scaffold567  C 0 I 28
s caePb3.Scfld02_0       3444885 182 +  4147112 AATAGTCAGCACGTCAGACGAG-----------------------------------TATCAC----ACAAACATCAGGATGAGATGA-AGTAGACGATGTCTGATTTTTGGTGTTCTTCTCGCAACTTCCTTCTTACTGCAATTGTGGTC-AGCAATGGAAAACGAAACCAGAGCGTTTTTGATCGGCCAATAAGATTCAAAGGGTGGCAGATGAA---AAAAGG-
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I

a score=-1513.000000
s ce10.chrX              5163797 16 + 17718866 TGACAAAGGGGGATTT-
s caeRem4.Crem_Contig0   1987752 13 -  4500979 ----AGATGTGTGGTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3445080 16 +  4147112 TCGTAATTGGATGGAA-
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     38588 28 +   141584 I

a score=2472.000000
s ce10.chrX              5163813 10 + 17718866 -----AC--CTGCAATT
s caeRem4.Crem_Contig0   1987765 17 -  4500979 AATGAACCGCTGCAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     38616 10 +   141584 -----AC--CTGCAGTT
i caeSp111.Scaffold567  I 28 I 137
s caePb3.Scfld02_0       3445096 10 +  4147112 -----AC--CTGCAATT
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I

a score=1461.000000
s ce10.chrX              5163823 12 + 17718866 TAATTGGTTTTG
s caeRem4.Crem_Contig0   1987782 12 -  4500979 TGATTAGTTTTG
i caeRem4.Crem_Contig0  C 0 I 2053
s caePb3.Scfld02_0       3445110 12 +  4147112 TACTTCTTTCTG
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     38626 137 +   141584 I

a score=-71.000000
s ce10.chrX              5163835 42 + 17718866 ATTATATCTGCAGATGTTGTAAAATTTTTATCACGGAAACTA
s caePb3.Scfld02_0       3445122 40 +  4147112 ATTTATTGCGTTGGTGTAGGGAAGGAA--ACCAtggaaataa
i caePb3.Scfld02_0      C 0 I 82
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     38626 137 +   141584 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=0.000000
s ce10.chrX              5163877 77 + 17718866 AAATGTTATATAAAGATATGATTTACATTTGATCCCTTATTCGAGCAGTTAAATTAAATAGAAAACATTAAGAAATT
e caePb3.Scfld02_0       3445162 82 +  4147112 I
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     38626 137 +   141584 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=561.000000
s ce10.chrX              5163954 11 + 17718866 GTTTTTAATTA
s caePb3.Scfld02_0       3445244 11 +  4147112 GGTTTCGATTA
i caePb3.Scfld02_0      I 82 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     38626 137 +   141584 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=-7835.000000
s ce10.chrX              5163965 220 + 17718866 AAATCACAGAAAAAA---ATCACA--ATTTTGTCCTTTC------TTTTGTTAACACTAATAAAATTTTTCAGATCT-----TTTGGATTAAGTTGAAAGAGCAAATATATATTTTTGTGACGACAGATGCTATTATTGCAAAATAAATTTATTCATAGGTTTCAACATAAAGTTTGTA-ATTTAATTTGCATAGAGTCTTATTCTGATTAAAGGTGTAAAGTT---CAAAGAAAGTCAC
s caeSp111.Scaffold567     38763 168 +   141584 aaatcAACGAAACAATGTATCAAGTTGTGTTGTCTTTTTTGAGGATTTCGATGGATTATACACgtttttccacattt-----tctgaagacAATCGG------------------TTTAAAACACAGTCAATCTTGAG------TAGATTTTC----------------GAGGTTTTTGCACATAAATTGTTAACA-----------------------aagtgaaactgaaaaaa----
i caeSp111.Scaffold567  I 137 C 0
s caePb3.Scfld02_0       3445255 183 +  4147112 --ACATATATAAGAACCGATcataaaatattatttcttt------------CAGCTAAAATATGTTACTCCTCATGTCTTCGTTTGAATAAAATGGA------------------ACTGGGCTACAAAAACTCTTGTT------TTGTTATCCTTTCAG---------TAAATTTTGTgccgataatttttttataat----------tcagAGATATCAAGTTATAGAAGGAAAATTCC
i caePb3.Scfld02_0      C 0 I 221
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=102.000000
s ce10.chrX              5164185 135 + 17718866 CTTTTCAAGGGAAAAAGCCGTTGTAACTAAAAAATAAT------------AGTTGAAAAGTCTGCGGGAAATTCAATTTTGGAGCA--TTCTCTGGAAAAGGAGTTGTGAGAAAGTTGTTAGTTCGGAGAATGTAAAAATTAAATAGTT
s caeSp111.Scaffold567     38931 134 +   141584 ----ttgaggaatcaaaatattttgaattaagAATGATTATATTTATTTGAGTACAAGCCCCCACAACAGTTTCCTTATTTGatcaagttttcagtttctgaatTTGTGCTGAAGTCTTTAAC-----------AAATgttcaatagtt
i caeSp111.Scaffold567  C 0 I 18
e caePb3.Scfld02_0       3445438 221 +  4147112 I
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=0.000000
s ce10.chrX              5164320 47 + 17718866 GGAAGATTGAATTTGAAAAAGATATGGTGCGGATATGGAGTGTAATT
e caePb3.Scfld02_0       3445438 221 +  4147112 I
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeSp111.Scaffold567     39065 18 +   141584 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=328.000000
s ce10.chrX              5164367 26 + 17718866 GTTAAGAAAAAAAAATCGATTTATTC
s caeSp111.Scaffold567     39083 23 +   141584 atcgagagaaaaaaattag---aatg
i caeSp111.Scaffold567  I 18 C 0
e caePb3.Scfld02_0       3445438 221 +  4147112 I
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=-18239.000000
s ce10.chrX              5164393 425 + 17718866 TCAATTGTCTCACAATATGAACATGCTATGTTCAGAAATTGTGTTTACG---------GTTTCTAATAAGATACTTTGTTAGAATACAGTTTGATCCAATTAAAACCTGACTTGTTC-----GACGTTTTCAAAAAATTCCAACAT-ATTTTAGATATCCAAGAA-----AAATTATCTTATTTTGCACTATTCAAGCTGTGGATTGTTTATTTATTCACTATTAGTAAGCTCG-TAAAACTGCCCTC--TGAAAAAGTTTTTCATAATTTAAAAAAATGC----GTACTATGGAAAAAATTCTTAATGTGAAAATATTT-CAGTTTGGTAATATTGCATT-------ACTTTAATTGGAAACATAAAGCATAAAACACCTATCCATTTTCAAAAGTTT-TAATAGCACAACTACGCACTTTTTGTATCGTCCATA---CACACTAATTTTCCTTGTTGCTTGG
s caeSp111.Scaffold567     39106 276 +   141584 -------------------------------tCAA----TAAAT--------------AAATCCAATAAAT--CATAAT----------CATGTTTCAGATCa-------------------aagttttctaaaataattcATCAC-ACCttcgattccaaaaaattgtgatAATGCAATATCCTG---------------------------------------------TCG-TATAACACACGTT-----CCAgcgttt--------aaaaaatattt---agaaacATGTTGagcgttttttct---------tttgtaattTAGAAATTATTCATTAAAAACCACATTTAATTGAACCACCTGTGA-------------aactttagaaaaata-tattgg---aACTAAGA-----TTGAACTATACACAAATCAcaccatttt--------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3445659 358 +  4147112 TGAACTATCTGTCAATTttagaa---cattctcaatg--tAAGTTCACGACCTCCCGAAAGTTCAATTACTGACATAGTGA----ATAGCCTGATTCAGTTTACGGGTGA-TTGCTGGAATCAAATTACTTAAACTAAGTTATTGCGAccaaaaagtgccaaaatttgtgaaattatCAATTTATA---------------------------------------------TCTCCAAAATAGACGTCAGCAACGAactttttcg----ataaaaacatGTACGAGTAATATGATaagggaattcaat---------ttt-caatcgaaGAATTCTACTTTTACGGGTTCTGTAAATTGAAACACAGGGAG-------------CAGCCAAACAAGATGTTAACGG---AAATTTGC-----ATAAACCAAACTCAA--CCCACCCATGT--------------
i caePb3.Scfld02_0      I 221 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I
e caeRem4.Crem_Contig0   1987794 2053 -  4500979 I

a score=785.000000
s ce10.chrX              5164818 81 + 17718866 CAAATAGTATTATCTAC-AAATGCACTGTATTTGAACTGAAAA--TTGTCATTCTGAAAATTGA----------AACTAGATATTTTGTCATCA------------------
s caeRem4.Crem_Contig0   1989847 86 -  4500979 CAAACAATGCTATCGTC-CAATGCACTGTGTATGTACTTGGAAATTTGTCactttgaaa--ttatcaaatgaaaaatt--atgaattatCA---------------------
i caeRem4.Crem_Contig0  I 2053 C 0
s caeSp111.Scaffold567     39382 98 +   141584 caaataacattATCTGA-AGAAGTACTTTCAatgcactgaaaaaatttccgcGTTGAAA--TAATC--------AGTT--TCAATTTGTCATCA-Caacttttatttcaata
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3446017 91 +  4147112 CAAACAAAATTATCTTACATTTGTCCTGCGCCTGCACTGAAGGAGTTGTCAtcat-aaa--tga------------------aaattatcaTCAGAAAGTTTCCTTTCAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I
e cb4.chrX              10497246 2655 + 21540570 I

a score=-69568.000000
s ce10.chrX              5164899 417 + 17718866  
s cb4.chrX              10499901 481 + 21540570  
i cb4.chrX              I 2655 C 0
s caeRem4.Crem_Contig0   1989933 470 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     39480 435 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3446108 503 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   556588 3393 +   591668 I

a score=60759.000000
s ce10.chrX              5165316 166 + 17718866 TTTA-------AAATTCTTTTTC------ACT-----------------TTCTTTGACTAAACAAATTTGAA--------------------TTCAGGGTTAATTGACTAAAC--------------ATGCGGTTGGTAAGGGATGATCCAGGATTACCGCTTTACAACACAACATCTCCGAAAGGTCACACGTTTCGACGGATAAGAGCTCGAGCTCGGCACGTTAGTT
s cb4.chrX              10500382 189 + 21540570 TGTCTCTGTTCTAATTTACCTAT------CCAAACCTCAGAGAATCGTATTCA-----TGCTCAGAATTAAGA---------------CATTTTCAGGGTTAATTGACTG-AA--------------ATGCGGCTGTCACGGGACGATCCAGGCTTGCCGCTATACCATAATGAGAACAACCGCAACCAAACACTTCGTCGGATCAGAACTCGAGCCAGATTTGTGAGTT
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   1990403 185 -  4500979 tgccgctcttccaatttatattt------cCG------GGACATTAATGTTTG-----TGATGAGATTTAAAAGC-------------TATTTTCAGGGTTAATTGACTG-AA--------------ATGCGGTTATCAAGAGATGATCCTGGTTTACCGCTTTACCACACAGACACTGCACGTGGCTACACCTTTCGCAGAATAAGAACTCGAGCCCGTCATGtgagtt
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold567     39915 167 +   141584 tttc-----tctatttttccctC------CAG-----------------TTCT-----TATATAAATTTACA----------------TAATTACAGGGTATTTTAACTAAAA--------------ATGCGGTTATCCAGAAATGATCCTGGTTTACCACTCTAccaatcagaaaataaacgAGGATACACGTTTCGGAGAATCAGAGCTCAAGCAAGAAATGTAAGTA
i caeSp111.Scaffold567  C 0 I 11
s caePb3.Scfld02_0       3446611 177 +  4147112 TATC---CGCTCAGTTTTTCCTCAAAACGCCG-----------------TTTTCTGAgtaaataaaatt-------------------tatttccagggttaattgactgaaa--------------atgcgGTTAACAAGAGATGATCCTGGTTTACCGCTCTACCACACGGAAAATAAACGAGGGCAGACGTTTCGGAGGATAAGAGCTCGAGCTAGAAACGTAAGTT
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold17934   559981 195 +   591668 ---------Tttaatcttctttt--------------------------ttctttattttgatACATTCTGAGCCGTTAAAATTCTCTTGTTTTCAGGGTTAATtaactaaaaaataaaaataaaccatGAAGCTAGCAAGAAATGATCCAAGCCTGCCAATGTACAACACGGACGTCTCACGAGGTCACACGTTTCGACGAATAAGAGCACGAGCAAAACATGTAAGTA
i caeJap4.Scaffold17934 I 3393 C 0

a score=-7850.000000
s ce10.chrX              5165482 31 + 17718866 --TTACA-----AT-GTTTAT---TCAAAATTTAGGCTTAAA
s cb4.chrX              10500580 32 + 21540570 --Tcaca-----ttaatttttgaattaaaaatca---tTATT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   1990594 24 -  4500979 ---------------gttttcatataaacgttaa---ttaat
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold567     40093 24 +   141584 --TGACA-----AT-TTCTCtcaattaatatt----------
i caeSp111.Scaffold567  I 11 C 0
s caeJap4.Scaffold17934   560176 38 +   591668 TATGAtatatttat-gttttt---tcaaaaatagaactgaaa
i caeJap4.Scaffold17934 C 0 I 6
e caePb3.Scfld02_0       3446788 34 +  4147112 I

a score=73547.000000
s ce10.chrX              5165513 518 + 17718866  
s cb4.chrX              10500612 532 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1990618 524 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40117 501 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3446822 507 +  4147112  
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold17934   560220 459 +   591668  
i caeJap4.Scaffold17934 I 6 C 0

a score=-1398.000000
s ce10.chrX              5166031 6 + 17718866 GTAAGT
s caeRem4.Crem_Contig0   1991142 5 -  4500979 GTTAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40618 6 +   141584 GTAAGT
i caeSp111.Scaffold567  C 0 I 34
s caePb3.Scfld02_0       3447329 3 +  4147112 GTA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   560679 6 +   591668 GTATCC
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10501144 0 + 21540570 C

a score=-3610.000000
s ce10.chrX              5166037 25 + 17718866 AACTTTGTTGATGCAATTTGAAATA
s caeRem4.Crem_Contig0   1991147 20 -  4500979 ---TTTATGGA--CGATTCGAACTG
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3447332 15 +  4147112 ----CTGTTG------CTACAACCG
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17934   560685  9 +   591668 ATTTTTATT----------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10501144  0 + 21540570 C
e caeSp111.Scaffold567     40624 34 +   141584 I

a score=0.000000
s ce10.chrX              5166062 6 + 17718866 AATGCT
e caePb3.Scfld02_0       3447347 25 +  4147112 I
e caeJap4.Scaffold17934   560694 0 +   591668 C
e cb4.chrX              10501144 0 + 21540570 C
e caeSp111.Scaffold567     40624 34 +   141584 I
e caeRem4.Crem_Contig0   1991167 7 -  4500979 I

a score=-2777.000000
s ce10.chrX              5166068 461 + 17718866  
s caeJap4.Scaffold17934   560694 360 +   591668  
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3447347  25 +  4147112 I
e cb4.chrX              10501144   0 + 21540570 C
e caeSp111.Scaffold567     40624  34 +   141584 I
e caeRem4.Crem_Contig0   1991167   7 -  4500979 I

a score=-31.000000
s ce10.chrX              5166529 13 + 17718866 CCATATTTTTCCA
s caeRem4.Crem_Contig0   1991174 10 -  4500979 tcaaatttct---
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold17934   561054  5 +   591668 -----ttttt---
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3447347 25 +  4147112 I
e cb4.chrX              10501144  0 + 21540570 C
e caeSp111.Scaffold567     40624 34 +   141584 I

a score=0.000000
s ce10.chrX              5166542 2 + 17718866 AA
e caePb3.Scfld02_0       3447347 25 +  4147112 I
e caeJap4.Scaffold17934   561059 0 +   591668 C
e cb4.chrX              10501144 0 + 21540570 C
e caeSp111.Scaffold567     40624 34 +   141584 I
e caeRem4.Crem_Contig0   1991184 0 -  4500979 C

a score=4820.000000
s ce10.chrX              5166544 6 + 17718866 TTTCAG
s caeRem4.Crem_Contig0   1991184 6 -  4500979 tttcag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40658 6 +   141584 tttcag
i caeSp111.Scaffold567  I 34 C 0
s caePb3.Scfld02_0       3447372 6 +  4147112 tttcag
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold17934   561059 6 +   591668 ttgcag
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10501144 0 + 21540570 C

a score=63883.000000
s ce10.chrX              5166550 71 + 17718866 TCATACTCGGATTGGTTCGACACTGGACTCACTATTGTTGATGGACTCGATACCGCAATTATTATGGGACt
s cb4.chrX              10501144 71 + 21540570 TCGTATTCCGATTGGTTTGACACCGGATTGACTATCGTTGATGGTCTGGATACAGCACTGATTATGGGTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1991190 71 -  4500979 tctTACAATGATTGGTTCGATACCGGATTGACGATTGTGGATGGACTGGATACGGCCATTGTTATGGGTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40664 71 +   141584 tcATATTCCGATTGGTTTGATACTGGATTAACGATTGTTGATGGACTTGACACTGCAATTATAATGGGTCT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447378 71 +  4147112 tcCTACTCTGATTGGTTCGATACAGGATTGACAATAGTTGATGGACTCGACACGGCTATTATTATGGGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   561065 71 +   591668 tccTTCTCCGATTGGTTCGACACAGGACTGACAATCGTCGATGGATTGGACACTGCCATCATCATGGGACT
i caeJap4.Scaffold17934 C 0 C 0

a score=-4428.000000
s ce10.chrX              5166621 48 + 17718866 tgaagatggtgag---tgatttttttggtggattgttttatcaaattcaaa-
s cb4.chrX              10501215 33 + 21540570 TGAAGAAGGTAAGACACTATTTTTAAGTTGAAA-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1991261 23 -  4500979 AGAAGAAGGTGAG------TTTCTTATTT-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40735 16 +   141584 CGAAGAAGGTAGA------TTT------------------------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447449 40 +  4147112 TACAGAAGgtatg------tttttcattcatgatGT------AAAGATAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   561136  0 +   591668 C

a score=-2406.000000
s ce10.chrX              5166669 27 + 17718866 atgattaaaacccaccaaattttgtaa
s caeRem4.Crem_Contig0   1991284 11 -  4500979 ----ACATTGcacac------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40751  6 +   141584 ------------CACCAA---------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447489 27 +  4147112 AAGAGCAGAACACACAAAATTGAGTAA
i caePb3.Scfld02_0      C 0 I 228
e caeJap4.Scaffold17934   561136  0 +   591668 C
e cb4.chrX              10501248  0 + 21540570 C

a score=-11283.000000
s ce10.chrX              5166696 75 + 17718866 tgaggcgtcttgaaaattcccaaaaaggttatggcTATTAATAGATGAATGGTCCGAATTTGGCAAC---TGAATTAT----
s caeRem4.Crem_Contig0   1991295 16 -  4500979 -------------------------------------------------------------agagaa---aaaatgttgt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40757  8 +   141584 -----------------------------------------------------------TTGGGGAA---------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447744 45 +  4147112 Cagagcttctt-----------------cttttgccaT--------------------TTTGGCAAACGTGACATTCTATGC
i caePb3.Scfld02_0      I 228 C 0
e caeJap4.Scaffold17934   561136  0 +   591668 C
e cb4.chrX              10501248  0 + 21540570 C

a score=-5195.000000
s ce10.chrX              5166771 43 + 17718866 TTCTTTTTTTTTTTGAGCGCATTTTGATAATTTATTATCATTT
s cb4.chrX              10501248  2 + 21540570 -----------------------------------------TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     40765 13 +   141584 --------------------------CTGT----TTAATGATT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447789 43 +  4147112 ACCCCCCTGGTTCCGGGCGCAACTTTCTGTCCAACTAACAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   561136  0 +   591668 C
e caeRem4.Crem_Contig0   1991311  0 -  4500979 C

a score=311372.000000
s ce10.chrX              5166814 532 + 17718866  
s cb4.chrX              10501250 695 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1991311 536 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     40778 533 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3447832 540 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   561136 702 +   591668  
i caeJap4.Scaffold17934 C 0 I 122

a score=71302.000000
s ce10.chrX              5167346 100 + 17718866 T--ATTATAGAAGACTCGACAATTACATTTGGAGCAAGATCTGACAGCTTTTATGAATACCTGTTCAAGCAATGGATTCAGACTGGAAAAACAATTGATT---------------------------------------------------------------GG
s cb4.chrX              10501945  99 + 21540570 T--CT-TCAGAGGGCGCTACCATTACCTTCGGAGCCAGATCAGACAGTTATTACGAGTACTTGTTCAAACAGTGGATTCAGACTGGAAAGACTATTGACT---------------------------------------------------------------GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1991847 142 -  4500979 C--ATAGCAGAAGGCGCCACCATCACATTTGGAGCAAGATCTGACAGTTATTACGAGTATTTGTTCAAGCAATGGATCCAAACTGGAAAGACGATAGACTGGTGAGACTTGTTGTATGAA--------ACCATGCCAATTTTGATG-------------TTCAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41311 100 +   141584 t--atttcagAAGGTGCAACTATCACTTTTGGTGCTCGATCAGACAGTTATTACGAGTATCTTTTCAAACAATGGATACAAACTGGAAAGACTATTGACT---------------------------------------------------------------GG
i caeSp111.Scaffold567  C 0 I 44
s caePb3.Scfld02_0       3448372 102 +  4147112 ttgttttcagagggTGCCACTATTACCTTTGGAGCAAGATCAGACAGTTATTATGAGTACCTCTTCAAGCAGTGGATTCAGACTGGAAAGACAATTGACT---------------------------------------------------------------GG
i caePb3.Scfld02_0      C 0 I 263
s caeJap4.Scaffold17934   561960 163 +   591668 T--ATTTCAGAAGGATCAACGATCACGTTTGGAGCAAGATCTGACAGTTATTACGAATATCTGTTCAAGCAATGGATTCAAACAGGAAAATCGATCGATTggtaacaatttttattttaattttcaatccgttgtttttttttctgtataatGTGTCATTTCAGG
i caeJap4.Scaffold17934 I 122 C 0

a score=318254.000000
s ce10.chrX              5167446 491 + 17718866 CTGAAAGAAGATTATGGTAAAGCAATGAAAGCGATGGAAAAGTATTTGTACAGAAATTCGAAGCCTAATAAAATGTTTTTCATTGGAGAACTTCTGAGTGGTCAAACGTACTCTCCTAAAATGGTACTTTAAAAAA-AAAATTGAAAATCCG-----CAATTTCATCTAAACTTCTCTAACATTTCAGGATCACCTTGTGTGTTTCATTGCCGGTACTTTATCGCAAGGTAGTCAACACGGTTTTCCAAGAAAACATTTGGATATGGCTGAAAAAATTGGAGAGACTTGCCACAATATGTATGACAATCCGACTGGCCTGGGACCAGAAATTGCACATTTTAACATGATTCCCGGGAAGGAAGATTTATATGTCAAGGTATGTCAAAAAAGGTTATGGTGGTGAAAGTTTTATGGA------------GTTTCAGCCACTTGATGCTCACTGTCTACTTCGTCCCGAAGCAATTGAAGCATGGTTTTACTTATACAGGTTCACAGGTGA
s cb4.chrX              10502044 433 + 21540570 TTGAAAGACGACTACGGAAAGGCTATGGCAGCCATGGAGAAGCATTTGTATAGAAACTCAGAgcctaataaaatgtttttcattggAGAGCTACTGAGTGGAGAGACATACTCTCCCAAAATGGTAAGATCT------TTTTGCCAAGTTTGCATGTCAATCTCA------------TAATATTCCAGGACCATCTTGTCTGCTTCATCGCTGGAACTTTATCGCAAGGAAGCCAAAATGGTTTTCCACGTAAACATATGGATATGGCTGAGAAGATAGGAGAGACTTGCCACAACATGTACGATAATCCAACTGGTTTGGGTCCAgagattgctcatttcaatatGATTCCTGGAAAGGAGGATTTGTATGTGA----------------------------------------------------------AACCGCTGGATGCGCATTGCTTGCTCCGGCCAGAAGCGATTGAAGGATGGTTCTACTTGTACAGGTTTACTGGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1991989 483 -  4500979 TTGAAAGAAGATTATGGAAAGGCGATGACAGCGATGGAAAAGTATCTTTATAGAAACTCAGAGCCTAAGAAGATGTATTTCATTGGAGAATTGCTGAGCGGAGAAACATATTCACCGAAAATGGtttgttttttgg-gtttcGAGAAATTTG-----GAATCTCAT---------TGTCATATTACAGGACCATCTCGTCTGTTTTATTGCGGGGACATTGTCACAAGGAAGTAAAAATGGTTTCCCACAAAAACATATGGATATGGCCGAGAAGATTGGAGAGACCTGCCACAACATGTACGATAATCCGACCGGGTTGGGACCAGAAATTGCTTATTTTAACATGATTCCTGGGAAAGAAGATTTATATGTGAAGGTTAGCTCA-----GGTTAATGGGTGATG--TTCATCTG----AATGTCAAATTTCAGCCGCTGGATGCTCATTGCCTACTCCGACCAGAAGCAATCGAAGGATGGTTCTACCTTTACAGATTTACGGGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     41455 473 +   141584 CTGAAAGAAGATTATGGAAAAGCAATGGCCGCAATGGAAAAATACTTGTATAGAAACTCCGAGCCCAACAAAATGTTCTTTGTTGGAGAGTTGCTCAGCGGTGAAACTTACTCCCCGAAAATGGTTAGtttc------actttcaaaactTGAAT--AAATATCT-----------------TTTTAGGACCACCTCGTATGCTTTATCGCCGGAACATTGTCTCACGGCAGTAAGAATGGTTTCCCTAGAAAACATTTGGATATGGCCGAGAGAATTGGCGAAACCTGTCATAATATGTATGACAATCCAACGGGGTTAGGACCAGAGATTGCTCATTTCAATATGATTCCTGGAAAAGAGGATTTGTATGTGAAGGTTTGTT-------GTTTGGATCATGATGAattcataat----tatttttattttcagccaCTGGATGCTCATTGCTTGCTTCGACCAGAAGCCATCGAAGCCTGGTTCTATTTGTATAGGTTCACTGGTGA
i caeSp111.Scaffold567  I 44 C 0
s caePb3.Scfld02_0       3448737 435 +  4147112 CTAAAAGAAGACTACGGAAAGGCAATGACCGCCATGGAGAAGTACTTGTACAGAAACTCAGAGCCAAACAAGCTATTCTTCATTGGCGAGTTGCTCAGCGGAGAAACATATTCACCAAAAAT-----------------------------------------------------------------GGACCATCTTGTGTGCTTCATTGCCGGAACCTTATCACAAGGAAGTAAGAATGGATTCCCTCGAAAGCATATGGATATGGCTGAGAAGATTGGAGAGACATGCCATAGCATGTATGATAACCCGACAGGACTGGGACCAGAGATTGCTCACTTTAACATGATACcaggaaaagaagatttgTATGTTAAGGTGAATTCA-----GTTAAAA----GAAGATAGCATAATATAAGATTTTGCATTTCAGCCTCTCGATGCTCATTGCTTGCTCCGACCCGAAGCCATCGAAGGATGGTTTTACTTGTATAGGTTTACAGGTGA
i caePb3.Scfld02_0      I 263 C 0
s caeJap4.Scaffold17934   562123 433 +   591668 CTAAAAGAAGACTATGGAAAAGCCATGACCGCTATGGAAAAGTATCTGTACCGCAATTCGGAACCCAAGAAAATGTATTTTGTTGGTGAATTGCTCAGCGGTGAAACCTATTCGCCAAAAATGGTAAATAATTCATCGTTGTTTGCAAT--------TAATTCTT----------CCCTCCCTTCCAGGACCACCTTGTATGTTTCATCGCCGGCACGCTGTCCCACGGAGCTCAAAACGGTTTTCCCAAAAAGCACCTGGAAATGGCGGAAACAATTGGCGAGACGTGCCACAACATGTACAACAATCCAACCGGTCTTGGTCCGGAAATTGCTCATTTCAATATGATTCCCGGAAAGGAGGATTTGTATGTGA----------------------------------------------------------AACCATTGGATGCTCATTGTTTACTGCGACCAGAAGCTATCGAGGCATGGTTCTATTTGTACAGGTTTACAGGTAT
i caeJap4.Scaffold17934 C 0 C 0

a score=1364.000000
s ce10.chrX              5167937 4 + 17718866 GAAT
s cb4.chrX              10502477 4 + 21540570 GATT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     41928 4 +   141584 GATT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449172 4 +  4147112 GACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   562556 4 +   591668 GTAT
i caeJap4.Scaffold17934 C 0 I 1626
e caeRem4.Crem_Contig0   1992472 0 -  4500979 C

a score=-2028.000000
s ce10.chrX              5167941 7 + 17718866 TATGCAC
s cb4.chrX              10502481 4 + 21540570 GCTC---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     41932 7 +   141584 TCTGAAC
i caeSp111.Scaffold567  C 0 I 37
s caePb3.Scfld02_0       3449176 7 +  4147112 AGAGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e caeRem4.Crem_Contig0   1992472 0 -  4500979 C

a score=671.000000
s ce10.chrX              5167948 9 + 17718866 AGTTAATTT
s cb4.chrX              10502485 8 + 21540570 -ATTAACTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3449183 9 +  4147112 TCTCAAGTT
i caePb3.Scfld02_0      C 0 I 52
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e caeSp111.Scaffold567     41939 37 +   141584 I
e caeRem4.Crem_Contig0   1992472 0 -  4500979 C

a score=-1405.000000
s ce10.chrX              5167957 52 + 17718866 GCGATTCATTGTGTCCACTGAATCATAATGCGCACATCGCAAGCTAACTAG-------A
s cb4.chrX              10502493 29 + 21540570 GT----------------------------CACATGTTTTAAG--AAATAGGAGAGTGA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3449192 52 +  4147112 I
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e caeSp111.Scaffold567     41939 37 +   141584 I
e caeRem4.Crem_Contig0   1992472  0 -  4500979 C

a score=-348.000000
s ce10.chrX              5168009 19 + 17718866 CGCACAAATGCTTTT---ACGG
s cb4.chrX              10502522 18 + 21540570 CGTATAATTGTTTTATAA----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold567     41976 15 +   141584 CACATAATttccttt-------
i caeSp111.Scaffold567  I 37 C 0
e caePb3.Scfld02_0       3449192 52 +  4147112 I
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e caeRem4.Crem_Contig0   1992472  0 -  4500979 C

a score=-2614.000000
s ce10.chrX              5168028 17 + 17718866 TAATAGTTTTGCAAATT---------
s cb4.chrX              10502540 17 + 21540570 TAACATAGGTCAAAATT---------
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold567     41991 17 +   141584 ---------taaaaaatatgattatT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449244 12 +  4147112 ---------TGgcaattttga-----
i caePb3.Scfld02_0      I 52 C 0
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e caeRem4.Crem_Contig0   1992472  0 -  4500979 C

a score=-12686.000000
s ce10.chrX              5168045 49 + 17718866 GTTGAAAAAAAACATCAAATTCTTATAATACTGTGTTGTGTTCCA---AAAC------
s cb4.chrX              10502566 23 + 21540570 -----------------------------------tttgaagaaattcaaacCAAAAC
i cb4.chrX              I 9 I 18
s caeRem4.Crem_Contig0   1992472 20 -  4500979 -----------------------------------GTTGAACGAA---AAATGAGAGT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold567     42008 39 +   141584 ----------ATCATGAGTTTCTGATAATATGATTATTAGGTACA---AAAC------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449256 29 +  4147112 ----------------aagttctgagAAC----TTGTCAGCCGTT---CAAC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   562560 1626 +   591668 I

a score=-7428.000000
s ce10.chrX              5168094 50 + 17718866 TATT------------TTCCCAGAAACGTTATTATTTGTTCCTACCTCACTGCATTTGTTCG
s caeRem4.Crem_Contig0   1992498 40 -  4500979 -ATGAAAATTAAGGTTTTTTCATGAgtct---------------------cacattttttga
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold567     42047 14 +   141584 ----------------TTCTTAGAAA------------------------TAGA--------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449285 17 +  4147112 ----------------CTTTTATTAAGTT---------------------TTCA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   562560 1626 +   591668 I
e cb4.chrX              10502589 18 + 21540570 I

a score=-21429.000000
s ce10.chrX              5168144 72 + 17718866 AACTTAGATAATATCCTACA----ATAAAATTAGTCAAATTCGtttttaaactaaatttttcaataaaaattaaaa
s cb4.chrX              10502607 43 + 21540570 -AACTTCGT--CACCCAATA------ACTACTTCCT-------TCTTCAAC----------------AAACT-AAG
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   1992538 23 -  4500979 -------------------a------ggtgtttccca----cattttcgat------------------------g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     42061 62 +   141584 CGACTAAAT--TATCACTTATCATTTGATATACGTCA-ATCAGCTTTCAAGTC-----------TCAaaacttcct
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449302 51 +  4147112 TAACCAGA----ATCACACA------AACATTCGTCA-TTGTTCATTTAATCT-----------TATGAACT---A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   562560 1626 +   591668 I

a score=256152.000000
s ce10.chrX              5168216 271 + 17718866 ttttCAGGAGACAAAAAATACCAGGAATGGGGATGGTCTGCATTCCAAGCAATTGAAAAATATGCTAGAATACCCACTGGCGGATACTCATCAATTTCAAATGTGAAACAAATTAATGTACGGTTCAGAGACTCAATGGAATCCTTCTTGCTAGGAGAGACTTTCAAATATCTATATTTGCTGCTTGGAGATGATCAAACTGTTTTACCTCTTGATAAATGGGTTTTCACTACCGAAGGCCACCCATTGCCAATTTATGATCATT-AA--ACTA
s cb4.chrX              10502650 268 + 21540570 ATTTCAGGCAACAAAAAGTATCAGGAATGGGGATGGGCAGCATTCCAAGCTATTGAGAAGTATGCTCGAATTTCTACTGGAGGATACTCTTCAATCTCCAATGTGAAAAAGATCAATGTACAGTATCGTGACTCGATGGAGTCGTTTTTGCTTGGAGAAACCTTCAAGTACCTATATTTGCTTCTTGGAGATGATCAAACTGTTTTGCCACTTGATAAATGGGTTTTTACTACGGAAGGCCACCCGTTGCCTATCTATGACCACTGAG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1992561 267 -  4500979 atttcagGTGACAAAAAGTATCAAGAGTGGGGATGGGCTGCGTTCCAAGCTATCGAGAAGTACGCGAGAATTCCAACTGGAGGATATTCATCAGTCgtgaatgtgaaaaaaatcgatgttAAATATAGAGATTCAATGGAGTCATTTTTGCTTGGCGAGACATTCAAATATCTTTACTTGCTTCTCGGAGATGACCAAACGGTTTTGCCTCTTGACAAATGGATTTTCACTACGGAAGGCCATCCATTGCCTATTTATGATCATT-AG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     42123 267 +   141584 ttttcagGCGACAAAAAGTATCAAGAATGGGGATGGGCTGCATTCCaagcaattgaaaaatacgcCCGTATTCCTTCCGGAGGATACTCATCAATTTCGAATGTGAAGAAGACTAATGTACAATACAGAGACTCAATGGAGTCATTTTTGCTTGGAGAAACATTCAAATACTTGTATTTACTTCTTGGAGATGACCAAACTGTTTTGCCTCTTGATGAATGGGTTTTCACTACGGAGGGTCATCCTTTGCCAATTTATGCCAATT-AA------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449353 273 +  4147112 TTTTCAGGTGACAAAAAGTATCAAGAGTGGGGATGGGCTGCATTCCAagccattgaaaaatatgccAGGATTTCCACCGGAGGATACTCGTCAATCTCCAATGTGAAAAAGATTAACGTACAATATAGAGATTCCATGGAATCATTTTTGCTCGGAGAAACATTCAAATATCTATATCTCCTCCTTGGAGATGACCAAACTGTTTTGCCACTTGATGAATGGGTCTTCACAACTGAAGGCCATCCATTGCCAATTTATGACCACT-AAAAACTg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   564186 271 +   591668 TTTCCaggagacaaaaaataccAAGAATGGGGATGGGCTGCGTTTGAAGCGATTGAAAAATACGCAAGAATATCCACTGGAGGATATTCGTCTATttcaaatgtgaaaaaaatcaatgtgcAATACAGAGATTCGATGGAATCGTTTTTGCTCGGAGAAACTATGAAATACCTGTACTTGCTACTGGCTGATGACCAAACAATCTTGCCGCTTGACCAGTGGGTTTTTACTACGGAAGGGCATCCATTGCCTATCTACGATCATT-AA--ATTA
i caeJap4.Scaffold17934 I 1626 I 31

a score=2784.000000
s ce10.chrX              5168487 46 + 17718866 GGTTTCTCTTCCTTTT----TTAAAACTTTTTTTCTCATCTAGTCTTGTT
s cb4.chrX              10502918 45 + 21540570 --TCTtcggtttttgtaaaattaat--tTAAGTGTGTTTCTAGTC-TGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1992828 42 -  4500979 --TTTGAGTTATTTAT---ATctga--ttatttatttttctagtc-tGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     42390 37 +   141584 --TTTATATTATgcct----ttaaa--ttttca----gtctAGTC-GGTT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449626 43 +  4147112 ggttttcgtttttctt----taaac--tttttattgcttCTAGTC-GGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   564457 31 +   591668 I

a score=-1276.000000
s ce10.chrX              5168533 76 + 17718866 CTTTTAAA---TTGTTTC--TGGTGTTAAA--TTTGTTTTTAAAAATATGTCGAAATTTAAGTTTGTCTTATATTAAGATACA
s cb4.chrX              10502963 48 + 21540570 TCATGGAA---AAGTGTT--------------TTTGGTGTTATT------------------GTTGTCTTATGTTAAGGCTTG
i cb4.chrX              C 0 I 106
s caeRem4.Crem_Contig0   1992870 56 -  4500979 ACGTGGAA---AAGTGTC-GAggtg-------ttttgttttgtt--------------cataTTTGTCTTATATTAAGAC--G
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold567     42427 67 +   141584 ACATAGAA---AAACTTC-ATGGTGT------TTTCTTTGTGTTGTTATT------GTTGAGTTTGTCTTACGTTAAGACTTT
i caeSp111.Scaffold567  C 0 I 2
s caePb3.Scfld02_0       3449669 61 +  4147112 ATGTAGAA---AAGCTTCGAAGGtgt------tattttattgtt-------------ttatatACGTCTTATATTAAGACTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   564488 64 +   591668 attttaaattctAGTCTAGCCAGTCTAAAAACAGCGTTGTCGTT------------------TTCGTCTTACGTTAAGACAT-
i caeJap4.Scaffold17934 I 31 C 0

a score=-4712.000000
s ce10.chrX              5168609  95 + 17718866 TTTGGGTATTA--ATTTTTTGTTTCGTTATTTT-CTTCTGTTGCTTCCATCAGAAATTCCATTCACTTCTTCGCAGGT-TGTCCAGTCCAGTA-------------------------------------------------------------------------------------------ACATGT--
s caeRem4.Crem_Contig0   1992932  72 -  4500979 ATTGGGTATT----------------ATAATGT-TTTGTGTTCTAACCA----ACATTCCACTGACCTCATCTCACATATGTCGA------TA-------------------------------------------------------------------------------------------ACTTGT--
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold567     42496 163 +   141584 CTTGGGTATT----------------TCACTAA-TTTGTATGGTTACCA----ACATTCCGTTGACCTCATTTGAAATGTGTCGA------TAATTTATTGATAAAGCAATATGAATGGATACATGTCTAGTTATTATTTCGTTGTTCTCAGTTTATACTGACTTCTTAAGAACCAAACTTATGAAATGT--
i caeSp111.Scaffold567  I 2 C 0
s caePb3.Scfld02_0       3449730  74 +  4147112 TTTGGgtatta---------------ttattgattttgtaTGATTAGCA----ACATTCCATTGACCTCATTTGAAATGTGTCGA------TA-------------------------------------------------------------------------------------------ACATgt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   564552  82 +   591668 TCTGGGTATCATAAtgctttttcttgtttttgt-tttgt-tatttgtca----aaatttattt----tcttcgAAAAT---TCCA------TT-------------------------------------------------------------------------------------------CCGTATTA
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10503011 106 + 21540570 I

a score=2944.000000
s ce10.chrX              5168704 15 + 17718866 AATTTATT----------GATAAAA
s cb4.chrX              10503117  7 + 21540570 ------------------aattaaa
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig0   1993004 25 -  4500979 ACTTtattattcataaaaaattaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     42659 15 +   141584 TATTCATt----------aattgaa
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3449804 15 +  4147112 aatttatt----------gataaaa
i caePb3.Scfld02_0      C 0 I 1334
s caeJap4.Scaffold17934   564634 13 +   591668 AATTTATT----------GGTAA--
i caeJap4.Scaffold17934 C 0 C 0

a score=245796.000000
s ce10.chrX              5168719 429 + 17718866 ----------CAATTTGTAAATAAACATTTTTGTGACGAAAAAGATGATTAATGAGCAGGAT---------TGGAAGACGTGTGGATATGAGTTGACGAGAAGTTGAGATTCTTTCGAGTT---------TTCC---GGCAGTGTAATATTATT---A------------AACGTGGAAGACGTTGCCGTTGTTGTTG--------GTCGT-GTTGTGGCCAGCGCTGTTGTGGTGCCGGAAACAAGCGCCGTGAAACATTTTTGAGGACAATGCTTCACTTCACATTCACACGGATCCGACGATGTTTCGATTTTCGACATTTCAATTTGTCTTGAAAACACGTCAGCAAGAGCAGGAGAAATTGTAATTGCAGTAGAGGTGAATGTGCTCAATGTGCTCATTGTTGTCGTA------GTTAT--------TGGTCGATG----------ATCAATCTCACCACGCTGCTTGTTATAATGATGGCTTCGGTGGTACATGTTACACCT
s cb4.chrX              10503124 430 + 21540570 ----------gaacTAAAcga-----------gtgataagaaaaatgacGATCA---TAAATGAGACTTGATGAAAGATTGATGGATATGAATTCACGAGAAGTTGAGATTCTTTTGAATT---------GTCCTGTGGCAGTGTTGAGTTATTGGAA------------GACGCGGAAGAAGTGGAAATTTCTAGTGT------TGTCGTTGTTGTGTCCAGCGCTGCAGTTGTGCCGGAAACAAGTGTGTGGAGACACTTTTGAGGACAATGCTTCACTTCACAATCACATGGATTCTCggctttttctattttcgacatttcaatttttcttgagaagacgtcagaaaGCGCAGGAGAAATTGTAATTGGTGTGGAAGTG---------ACAGTGGTCATTGTTGAGGTTGTGGTCACAAT--------TGGTTTGTG----------ATCAATTTCGCCACGTTGCTTGTTGTAATGATGGCTTCGATGGTACATGTTACACCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1993029 421 -  4500979 ----------gaactATAAGATTT--------GTGatgagaaaaattatcattg---aGAAT---------TGAAAGATCAAGGGATATGAGTTGACGAGAAGTTGAGAttcttttgagtt---------ttca---ggCAGTATGCTGCTGTTGTTG------------GAAGCGGAAGAAGTAGAAattgtcgtcgtcgtcggcgtcgtcgtTGTTGCCAATGCTGTTGTTGTGCCGGAAACTAGTGTGGAGAGACACTTCTGAGGACAATGCTTCACTTCACAATCACATGGATTCTCcgctttttctattttcgacatttcaatttctggtGCAAAGACGTCGGAAATTGCCGGAGAAGTGGTAATTGCTGCTGAGGTA---------ACGGCGCTTATTGTAGACGTG------ATAAT--------TGGTTTATG----------ATTGATTTCGCCACGTTGCTTGTTATAGTGATGACTTCGATGATACATGTTACACCt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     42674 426 +   141584 ----------taattgaaaaatca------gagtgataagaagaatgaaagtTG---AGAAT---------TGAAAGATCGAAGGATATGAGTTGACGAGAAGTTGAGattcttttgtatt---------ttct---tgCGGTAAGCGATTGCTTGTACTTGTGGTgctcaaaactgaaaaagtggTCTCT------------TCCGTTGTCGTTGTGGTCAGCTCTGTTGTTGTGCCGGAAACAAGTGTGGAGAGACACTTTTGAGGACAATGCTTCACTTCACAATCACATGGCTtctccactttttcaattctcgaCATTTCGATCTTACGAGAATATGTGTCGGATTGAACTGGTAAAACAGTAATTGCAGTTAAGGTGGG------CATTGCGCTCATTGTTGACGTC------ACGAT--------TGGTTCATG----------ATCGATTTCTCCACGTTGTTTGTTATAATGATGGCTTCGATGGTACATATTACACCT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3451153 432 +  4147112 ----------CAATCCAATAATTATGATATTAGTGATAAGTAATAATAAAGatg---agaat---------tgaaagaatGACGGATATGAGTTGACGAGAAGTTGAGATTCTTTTGAATT---------ATCA---GGCGGTGAGATGCTGCTGCTA------GTGCTGAAAACGGAAGAAGTGGACTCTGGCGCTGT---CGTCGTTGTCGTTGTGGCCATTGCTGTTGTTGTGCCGGAAACGAGTGTTGAGAGACACTTTTGAGGACAATGCTTCACTTCACAATCACATGGATTCTCtgctttttctattttcgacATTTCAATTTGTCGAGCAAAAACGTCGGAGAGAGCCGGAGAAATAGTAATTGCTGTTGAGGTG---------ACTGTGGTCATTGTCGACGTA------ACAAT--------TGGTTTATG----------ATCAATCTCTCCACGTTGCTTATTGTAGTGATGACTTCGATGGTACATGTTACACCT
i caePb3.Scfld02_0      I 1334 C 0
s caeJap4.Scaffold17934   564647 458 +   591668 TTATaaaaaacaactcaataataa--------aaaaagagaaaaatgaaaaata---tgaattgtaaattatgaaatataaaaggatatgaattgaCGAGAAGTTGAGATTCCTTAGAGTTGGATTCAACGTCG---GGTGACGTGGAATTGGGATAAGGAggcggagaagaagaagaagaagaagaagtcgtCGATGA---------CGTAATTGTGGCTAGTGTGGTAGAGGT------------------GAAACACTTTGAAGGACAATTCTGAACTTCGCATTCACACGGATTTGAAggctttttgatttttgacaaTTCAATTTGTCGAGCAAAAACATCCGAAAGCACTGGAGATAGTGCAAGCTCTGTAGTAGTGACAATA---ACTTCAGTGGTTGTAGGTGAA------ACAGTGGAAGTAGTGGTTTCCATTGGGATTGTGTTGATTTCACCCTTTTGCTTATTATAGTGATGAGCTCGATGGTACATGTTACACCT
i caeJap4.Scaffold17934 C 0 C 0

a score=2194.000000
s ce10.chrX              5169148 4 + 17718866 AGAA
s cb4.chrX              10503554 4 + 21540570 GGAA
i cb4.chrX              C 0 I 2702
s caeRem4.Crem_Contig0   1993450 4 -  4500979 aaaa
i caeRem4.Crem_Contig0  C 0 I 186
s caeSp111.Scaffold567     43100 4 +   141584 AAAA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3451585 4 +  4147112 GAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   565105 0 +   591668 C

a score=0.000000
s ce10.chrX              5169152 27 + 17718866 GTTGGAAAAAATTTTTAGATTATTATC
e caePb3.Scfld02_0       3451589  0 +  4147112 C
e caeJap4.Scaffold17934   565105  0 +   591668 C
e cb4.chrX              10503558 2702 + 21540570 I
e caeSp111.Scaffold567     43104  0 +   141584 C
e caeRem4.Crem_Contig0   1993454 186 -  4500979 I

a score=-7039.000000
s ce10.chrX              5169179 141 + 17718866 TTGCACTTTAGTCATATTTGTGAGAATATTAAAGGAAGGTGAGAAAAATTCTAAGAAGT--ACGTGAAAAGTTGACTGAAAACGCTAAAAGCCACTTCACTGATCAAGGTGCAAAAACCAAATGTATTGTAAATATTTCGTAC
s caeSp111.Scaffold567     43104  50 +   141584 -------------------------------------------------CGTGTTAAAT--acgaaa-----------------ttaaaaact-------------agGTGCTAA---TAAATA---TTTAACTGTT------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3451589  40 +  4147112 -------------------------------------------------ACTCAGAAGTGAAcgtaa-----------------ctaaca-----------------------------aaata---ttcaagTATTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   565105   0 +   591668 C
e cb4.chrX              10503558 2702 + 21540570 I
e caeRem4.Crem_Contig0   1993454 186 -  4500979 I

a score=-8819.000000
s ce10.chrX              5169320 48 + 17718866 AAAAACATGATGC---------TCTGTAGAGTACAACTTTCAAATAGTTTTTGTCGT
s caeSp111.Scaffold567     43154  1 +   141584 --------------------------------------------------------G
i caeSp111.Scaffold567  C 0 I 13
s caePb3.Scfld02_0       3451629 18 +  4147112 ----GCGTGA------------TCCATA-AGCac----------------------t
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17934   565105 24 +   591668 GAAAACGTAATGCAGTTCATTTTC---------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10503558 2702 + 21540570 I
e caeRem4.Crem_Contig0   1993454 186 -  4500979 I

a score=0.000000
s ce10.chrX              5169368 13 + 17718866 TTTACGAAAAAGT
e caePb3.Scfld02_0       3451647 17 +  4147112 I
e caeJap4.Scaffold17934   565129  0 +   591668 C
e cb4.chrX              10503558 2702 + 21540570 I
e caeSp111.Scaffold567     43155 13 +   141584 I
e caeRem4.Crem_Contig0   1993454 186 -  4500979 I

a score=-9323.000000
s ce10.chrX              5169381 68 + 17718866 GGTAAATACCGTAAAAGTGAATCCAGTCATAA----TAGTAGTAAAGAATGTGGGAATTCAATTGAAATTTC
s caeRem4.Crem_Contig0   1993640 49 -  4500979 ------ttttaaaaacataaaattagtGTTCTGACGTAGTGAGGatggatttcaa-----------------
i caeRem4.Crem_Contig0  I 186 C 0
s caeSp111.Scaffold567     43168 61 +   141584 ---GTAGTTCTTGGataatgaattatttttgt----tagtCAGGAGGAACGTTCA----CACTTGGACTTTC
i caeSp111.Scaffold567  I 13 I 32
s caeJap4.Scaffold17934   565129 12 +   591668 ------------------------------------TATCAACAAAga------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3451647 17 +  4147112 I
e cb4.chrX              10503558 2702 + 21540570 I

a score=-4509.000000
s ce10.chrX              5169449 51 + 17718866 CAACAAGTTTCAAGTTATTTTTTCACGGCTTTTAATATGTT--TTTTTTGTTT
s caeRem4.Crem_Contig0   1993689 39 -  4500979 -----------aatttagtttttccaaatattgaATGAGTTAATGAGTTG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   565141  1 +   591668 ------------------------------------------------t----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3451647 17 +  4147112 I
e cb4.chrX              10503558 2702 + 21540570 I
e caeSp111.Scaffold567     43229 32 +   141584 I

a score=-6465.000000
s ce10.chrX              5169500 47 + 17718866 CAAAAACATTTATCAAGCGTATTTCTCAATTGTTGTGTTTAGAAACA
s caeRem4.Crem_Contig0   1993728 36 -  4500979 ---GAACGTTCTCCAAACAT-TATATGAATTAAACTGCTC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43261 15 +   141584 ------------CCAAA-----ATATGTATTT---------------
i caeSp111.Scaffold567  I 32 C 0
s caeJap4.Scaffold17934   565142 17 +   591668 taaaaatatatattgaA------------------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3451647 17 +  4147112 I
e cb4.chrX              10503558 2702 + 21540570 I

a score=-123.000000
s ce10.chrX              5169547 1 + 17718866 A
s caeJap4.Scaffold17934   565159 1 +   591668 T
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3451647 17 +  4147112 I
e cb4.chrX              10503558 2702 + 21540570 I
e caeSp111.Scaffold567     43276 0 +   141584 C
e caeRem4.Crem_Contig0   1993764 0 -  4500979 C

a score=209791.000000
s ce10.chrX              5169548 350 + 17718866 ACCTTTGCGGTAACCTTATTCGATTTGTGGCAAATTTTAATACTTTTGAAAAACTATTCTGAATTGCATCGTCTATTGCTTTTTTGACTAAGAATGCTTCATCCGAACAACGATGCATGTACTTGTCGGAACAATCACGATATTTCTCCAGCGATCTATAATAT--------TTTTTATCAAT------CACTTGCCATGTATCACTT---------------GTA-TTAATCACTTGCAAAATACTGTAATTGTAAAAGTAGTGAGCATGTACATGTCACAATGCTTGCTCACTTGCTGCTGATGATCCCTTTCGCAGTTCAAGTACTCGTTCGAAGCTGTAAGA----------------------------------------------A-CAGAAATAATACAGC-------GGGTTGTT-TTCGA----TTTC----C-
s cb4.chrX              10506260 357 + 21540570 ACCTTTGAGGTAACCTTATCCGATTGGTtgcaaattttaaaacctTCGAAAAACTGTGTTGTATCGCATCGTCTATcgtttttttgactgaaaatgccTCATCTGAACAGCGATGCATATACCTATCCGAGCAATCGCGATACTTTTCTATTGATctgaaacat--------ttcga---aat------catttttaatAAACTTTTCTAGGAGAGGATAAAAATT-CTACTCACTTGCAAAACACAGTAATCGTAAATGTGGTAGGCATATAGGAATCGCAATGCTTGCTCACTTCTTGTTGATGGTCCCTCTCACAGTTCAAATATTCGTTGGATGCTGAAAAA----------------------------------------------ACCGGAAA--TGAT-----------GGTTGTTTTTCGC----TTCT------
i cb4.chrX              I 2702 I 3
s caeRem4.Crem_Contig0   1993764 343 -  4500979 ACCTCTGTGGTAATCGTATTCGATTAGTGGCAAATTTGAGTACTTTGGAAAAACTGTTCTGGATAGCATCGTCTATCGCTTTTTTCACTATAAACGCTTCGTCCGAACATTGATGCATATAACGGTCGGAACAATCCCGGTACTTTTCTAGCGATCTGAAATAGA------ATAGGT---AGT------CGTGTGTTATCTGTTTTCA-------------------CTTCTTACTTGCAAAAAACGGTAATAGTAAATGTGGTAGGCATGTACACATCACAGTGCTTGCTAACTTGTTGTTGATGATCCCTTTCACAATTCAAGTACTCGTTCGaagctgaaata------------------------------------------------ttgaaa--atat-----------tgttgtTATTTGCGGTGTTCC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43276 340 +   141584 ACCTTTGGGGTAACCGTATCCTATTTGTTGCAAACTTGAGAAcctttgaaaaactattctgTATAGCATCATCTATTGCCTTTTTGACTAGGAATGCTTCATCTGAGCATCGATGCATATATCGGTCAGAGCAATCTCTGTACTTTTCTAGCGATCTGTAAAAA--------TATTA---TGCCTGCAGTAC-TCTGATCTATTT-------------------------CTCACTTGCAAAATACTGTAATAGTAAAAGTAGTAGGCATATAAATATCACAATGCTTGCTCACTTGTCGCTGATGATCCCTCTCACAGTTCAAATACTCGTTTGAAGCTGAAAA-------------------------------------------------CGGAAGCAATGt-----------gcttgtt-tttgt----tgttcgaC--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3451664 334 +  4147112 accTTTGTGGTAGTCGTATCCTATTTGTAGCAAACTTCAAAACCTTTGAAAAGCTATTTTGTATCGCATCATCTATTgcttttttcactaaaaacgCTTCATCAGAACATCGATGCATGTATCTGTCGGAGCAATCTCTGTACTTTTCTAGCGATCTGAATATA--------CTTTT---TAC------tac-tttattttattttct---------------att-gaaCTAACTTGCAAAATACAGTAATAGTAAATGTAGTAGGCATGTAGATATCACAATGCTTGCTCACTTGTTGTTGATGATCCCTTTCACAGTTCAAGTACTCGttagaagctgaaaa-------------------------------------------------tgagag--atg--------------TTGTT-TTCGG----TTTT------
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17934   565160 407 +   591668 ACCTCTGTGGTAGTCTTATCCTATTTGTTGCATATTTCATAACCTTTTCGAAACTATTCTGAATTGCATCGTCTATCGCTTTCTTTATCAAAAACGCTTCGTCTGAGCAACGATGCATATACCGATCTGAGCAGTCCCGATACTTTTCTAGAGAtctaaataaaacaatgcatAGAA---AAA------TACTTATCATAATTTCAAA---------------ATAGTTCCCCACTTGCAAAACACTGTTATGACGAATGTAGTAGGCATATAAGAATCACAATTCCTGCTCACTTGTTGTTGATGCTCCCGCTCACAGTTCAAGTACTCATTTGAGGCTGAAATATGTaccgttttattttattttagtgtTTGTATATATTCCGCGCTCTA-TCGATG--ACACAACGCATGTAGCGTTGTT-TCAGA----TTTT-----A
i caeJap4.Scaffold17934 C 0 C 0

a score=-11274.000000
s ce10.chrX              5169898 21 + 17718866 -------AGGAACAAAACAC-----------------TAGACGGA------------
s caeRem4.Crem_Contig0   1994107  2 -  4500979 -------------------------------------------AA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43616 13 +   141584 -------GGGGGGAAAA-------------------------CGA------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3451998  3 +  4147112 ------------------------------------------GGA------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   565567 57 +   591668 GCGAAAGGGGAAGAAAGAGCGCTCCGTTGAATTGAATTCGGCGGAAAActagacgag
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10506617  3 + 21540570 I

a score=3159.000000
s ce10.chrX              5169919 3 + 17718866 ACG
s cb4.chrX              10506620 3 + 21540570 ACA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1994109 3 -  4500979 ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43629 3 +   141584 ACG
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3452001 3 +  4147112 ACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   565624 3 +   591668 acg
i caeJap4.Scaffold17934 C 0 I 107

a score=204154.000000
s ce10.chrX              5169922 277 + 17718866 CACCTCTTGTAGGTTTTCGCATCAATGCACAAAATTTCTTCCACTGGTCCATAGAAGATAGCAGGATGGCTCGTGCATTGTCACGTGAGCACGAACGAACACAAGTCTCCCAGCTTTTCACTCGTCTAAA-----AATATG-----ATAGTTGGATGCTATAAAGAGT--CAGT---AGATGGTTATTACGTGCACAGTGATCGGATTTGTTTATGAGCTGATCGATTATCTTCTGTGGATGCGATTATTTTATGGAATGGCGCAAGCATGGTTGTTGTTTCAGTAGAACCT
s cb4.chrX              10506623 275 + 21540570 CACCTCTTGTAGGTTTTCGCATCAACGCACAAAACTTTTTCCACTGTTCCATAGATGAAAGAAGGATGGCTCGAGCACTGTCGCGTGAGCACGAACGAACGCATGTCTCCCAGCTTTTGACTCGTCTGGAATTAcgaaattattgaatttt---aatttttgatgagA--GAGC------------TCACTGGCAAAGAGCGCGGATTTGCTTGTGAGCCGATCGATTGTCTTCTGTGTTAGCAATGATCTTGTGAAATGGGGCCAACATTGTTGTTGTTTCCGATGAGCCT
i cb4.chrX              C 0 I 102
s caeRem4.Crem_Contig0   1994112 274 -  4500979 CACCTCTTGTAGGTTTTCGCATCAATGCACAGAATTTCTTCCATTGGTCCATAGAGGAGAGAAGAATTGCTCGTGCACTGTCCCGTGAACATGAACGAACACAGGTCTCCCAACTTTTCACTCgtctgaa--ttcaaattt-----atact---gattttgaaaaaaa--aaat---aaa---ttattacgTGCAAAGTGAGCGGATTTGTTTATGTGCTGATCGATTGTCTTCAGTGCTGGCTATAATCTTATGGAATGGAGCCAACATGGTTGTAGTTTCTGACGAACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     43632 274 +   141584 CACCTCTTGTGGGTTTTCGCATCAACGCACAGAATTTCTTCCACTGGTCCATTGAAGAGAGGAAAATCGCTCGTGCACTGTCACGTGCACATGATCGAACACACGTCTCCCAGCTCTTGACTCGCCTGAA--CTAGGTACA-----AAAGT---GAGCAATAAACGAA--AACG---AGA---ATCTTACGTGCAGAGAGAACGGATTTGTTTGTGAGCAGAACGATTATCTTCAGTTGTTGCAATGATTTTATGAAAGGGGGCAAGCATTGTGGTAGTTTCAGAGGAGCCT
i caeSp111.Scaffold567  C 0 I 121
s caePb3.Scfld02_0       3452004 277 +  4147112 CACCTCTTGTGGGTTTTCGCATCAACGCACAGAACTTCTTCCACTGGTCCATAGACGAGAGGAGTATTGCCCGTGCACTGTCGCGTGAACACGAACGAACACATGTTTCCCAGCTTTTGACTCGCCTgga-ttttaacaaa-----aaagt---aaagtatCAAAGAGGTGAAG---AAA---TTCTCACGTGCACAGAGATCGTATTTGTTTGTGAGCTGAACGATTATCTTCAGTTGATGCAATGATCTTGTGAAATGGGGCTAACATTGTTGTGGTTTCCGATGAACCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   565734 282 +   591668 AGCCTCGTGTTGGTTTCCTCATCAACGcgcaaaacttcttccactGGTTCATAGAAGAAAGAAGAATCGCCCGAGCATTGTCCCGTGAGCACGACCGAACACATGTTTCCCAGTTTTTGACACGGCTAAATCATTGTTTTt-----atatg---tttttttaaaacaa--aaatttgaaataataTTTACGTGCAAAGTGATCGAATCTGCTTGTGAGCCTCACGATTATCACTGGTGGAGGCGATGATCTTGTGAAATGGAGCCAACATGGTGGTGGTTTCGGAGGATCCT
i caeJap4.Scaffold17934 I 107 I 120

a score=540.000000
s ce10.chrX              5170199 8 + 17718866 TCAAATAA
s caeRem4.Crem_Contig0   1994386 8 -  4500979 GAAACTAA
i caeRem4.Crem_Contig0  C 0 I 130
s caePb3.Scfld02_0       3452281 7 +  4147112 -GGAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566016 120 +   591668 I
e cb4.chrX              10506898 102 + 21540570 I
e caeSp111.Scaffold567     43906 121 +   141584 I

a score=234.000000
s ce10.chrX              5170207 216 + 17718866 CGGATTATTTTGGCTACTTTGACGCTAAGAAAGTTTGCGGTGAAAAATATAAACGAATTAGTATGGGAACAGTGAACTAGTTAGTCAAACGTTTAAAGTTTGTTGAATGAAAGTTCTAAACTATTCAAAAAAAAATC--CGAATGTCAACTGTGAAAATCAAAGATTTATTGCGAAAAAAAAAATTTTCATTCAAAAAAATTGCCAAAATTGCCTAAA
s caePb3.Scfld02_0       3452288 150 +  4147112 --------------------GACGTAAAGATA------GGCCAAAA---------------TATGTGGAAGGTGCATGTTTTAG---------TATAGCTTAAGAAAccag-----------atttgagaaaaaatttatgaaag---aCTGAACAAAACAGAAGctcatt-cgaaaaagaagacttttttccactaaaat---cAAAGTGCACTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566016 120 +   591668 I
e cb4.chrX              10506898 102 + 21540570 I
e caeSp111.Scaffold567     43906 121 +   141584 I
e caeRem4.Crem_Contig0   1994394 130 -  4500979 I

a score=0.000000
s ce10.chrX              5170423 134 + 17718866 AAAACGAAGTTTTAAAATTTCAAAACATTTTGGAGTATTCACATGTATTTTGCGGCAAGTTGTTCACTTTTCACATTCAACGAGTTTTTTGAAATTATCAAAAAAAAATTTACGAGAAAAGGCCATTTGGCCGT
e caePb3.Scfld02_0       3452438   0 +  4147112 C
e caeJap4.Scaffold17934   566016 120 +   591668 I
e cb4.chrX              10506898 102 + 21540570 I
e caeSp111.Scaffold567     43906 121 +   141584 I
e caeRem4.Crem_Contig0   1994394 130 -  4500979 I

a score=-3887.000000
s ce10.chrX              5170557 328 + 17718866 TTTTGGCAACAACTGTCATAATAAATTAATCTTAAAATTTCAATTTTTACGAAATAGTTCAGACAGGTATGGTCAAATCAACGTACCTAATCAAAAAACTAAAATTTTATTGAGAAGCTCAGCAAATTTGGTTCATACTTTGTTCATTTGGAACTTGTTTCAACAAA-AATTAATGGCAAAAATCTTATGGCAATTTAAGAATAATTTTAAACGATTTCGAGTCATTTTCGCTTTACAAGATGTGCTTGAAACAACTTAACTATTTCCAAACTGGTTAAAAATTTCAACACTACACTTTTTTATACATTTTTTGGAAGAAAATTTTTTG
s caePb3.Scfld02_0       3452438 136 +  4147112 TTTGAGCAACAGCactcatgaaaaatgaa---------------ttatacAAAATCGGTGAGACTAAAATGG----------------------------GGGGTCTTTTTGA---------------------ACATCCTTGTCAGCCAGAATTCATTCGGACAAACAATTGAGGTCA----------------------------------------------------------------TGCTTGACATA-------------TAAAC------------------CTACC----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566016 120 +   591668 I
e cb4.chrX              10506898 102 + 21540570 I
e caeSp111.Scaffold567     43906 121 +   141584 I
e caeRem4.Crem_Contig0   1994394 130 -  4500979 I

a score=273.000000
s ce10.chrX              5170885 1 + 17718866 A
s caeSp111.Scaffold567     44027 1 +   141584 A
i caeSp111.Scaffold567  I 121 C 0
s caePb3.Scfld02_0       3452574 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566016 120 +   591668 I
e cb4.chrX              10506898 102 + 21540570 I
e caeRem4.Crem_Contig0   1994394 130 -  4500979 I

a score=910.000000
s ce10.chrX              5170886 1 + 17718866 A
s cb4.chrX              10507000 1 + 21540570 A
i cb4.chrX              I 102 C 0
s caeRem4.Crem_Contig0   1994524 1 -  4500979 A
i caeRem4.Crem_Contig0  I 130 C 0
s caeSp111.Scaffold567     44028 1 +   141584 A
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3452575 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566016 120 +   591668 I

a score=56643.000000
s ce10.chrX              5170887  86 + 17718866 TACCTGTTATGTCAGAAATGGAGCGTTGAAACTTGGTCATACACACTGCCGTGCAGTACTGAGCTGTT---GTAGTGTAAAC----------------------TGAAATT--
s cb4.chrX              10507001  84 + 21540570 TACCTGTTATCTCAGCAATCGAACGATGAAATTTTGTCATACATACAGCTGTGCAGTACTGTGCAGAA---ATCGATGAAac----------------------taaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1994525 106 -  4500979 TACCTGTTATCTCAGCAATCGATTTGTGGAACTTAGTCATACAGACAGCTGTGCAGTACTGAGCAGAA---GTTGAAATAACTGGAAAATGTTATCTGAGTGTTTAAAa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     44029  84 +   141584 TACCTGTTATATCGGCAATCGAATGATGAAATTTTGTTACGCAGACAGCTGTGCAGTATTGCGCAACA---GTGTaaggaac----------------------tgaaa----
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3452576  84 +  4147112 TACCTGTTATCTCTGCAATCGAGCGCTGAAACTTTGTCATACAGACAGCTGTGCAATACTGCGCAGTA---ATCGGACAAAC----------------------TGAAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   566136  89 +   591668 TACCTGTTATCTCCGTGATGGATTTTTGGAATTTGGCCATGCAAATTGCTGTGCAATACTGTGCAGAAATTGTGGAAGAAAC----------------------TGTAA--TT
i caeJap4.Scaffold17934 I 120 I 1216

a score=-16409.000000
s ce10.chrX              5170973 36 + 17718866 CCGCCCATATATTTCTTT---------------TCAAAAAAA-------------------------------AACGGCCTA
s cb4.chrX              10507085 39 + 21540570 -------taattttgttttccagat--------atgataaaa----------------------------tcaaaaaaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1994631 55 -  4500979 -------cgtatttatttttcaatt--------tcaaccaagatatttaaatgat------------ttttcaaattgacta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     44113 72 +   141584 ----------aatcgattcgaCATTAATAaagatttagaaaaatatgtttttgcCCGTTTTATCCGATATTTCATGAAACAT
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3452660 44 +  4147112 ------GCATACTCGATT---------------TTTATAAAA-----CTGCTACc------------tatattagaaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   566225 1216 +   591668 I

a score=86327.000000
s ce10.chrX              5171009 128 + 17718866 ACCTGTCAACAGCAAAATGCTGATGGAGATCGGTAGATTCATGTGTGAACGAAGATCATGTCGAGGTGGGAATGGGAATAATTTGTCTCTTGCTTGTTCTTATTCCGTTGTTGTGTTTT---TCATGAAGA
s cb4.chrX              10507124 122 + 21540570 acctgtcaacAGCAAAATGCTGTTGATGATGTAAAGATTCATGTGTAGACCAAGATCATGTCGAAGTGG----AGTAATAACA--ACTAGAGT---TCTTTATTCCGGTGTCGTGCTTCTTTTCATGGAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1994686 120 -  4500979 ACCTGTCAACAGCAAAATGCTGATGCTGGTGAGTAGATTCATGTGTAGGCCAAGACCATGTCGAAGC------AGGAATAATT--ACTTGAGCAAGTCCTTATTCCGGTGGTGTGCTTC---TCATGAAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     44185 122 +   141584 ACCTGTTAACAGCCAAATACTGATGATGGTGAATAGATTCATGTGTAGACGAAGATCATGTCGAGGTGG----GAGAATAACT--TCTTGAGCAAGTTCTTACTCCGGTCTCGTGTGCC---TCATGAAGA
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3452704 122 +  4147112 acctgtcaACAGCAAAATGCTGATGGTGGCGAATTGATTCATGTGTAGACCAAGATCATGTCGAAGCAG----AGGAATAATT--ACTTGAACAAGTCCTTATTCCGGTGTTGTGCTTC---TCATGAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   567441 103 +   591668 ACCTGTCAACAGCAAAAAGCTGATGAGTCGGAGAAAATTCATGTGT------AGAACATGTCGAAGT------TGGAGTAAGT--GC--------GTCACTCTTCCTGT---GTGCTTC---TCATGAAGA
i caeJap4.Scaffold17934 I 1216 I 2383

a score=43056.000000
s ce10.chrX              5171137 196 + 17718866 AGTTTTGCGGCTTTTCT---GCAATTTATCTAATATTCATT--GCGTTTTT-AAATTCAGCAACAATTAAAG----AGCACAAATTCAAGCGTGACGAAAATGTACGGGTG--------GT-------------------GAGATAAAA------GAAACGTCGCCCGACTCGGGAATGTGCAAATGAGTCTGAGTGGCTTG---AAATTGAGAGCATTATC-GACT---TTTGATCTAGATGAGA
s cb4.chrX              10507246 207 + 21540570 CGTTGTTGTACTCTGT----------TATATAATATTCATTGCGCGGTTAT---------ACACAATTAAAACATGGGCACAAATTCAAGCGGAACAAA-ATGTACGAATCTGTCAAGAGCTAGGAGGAAAAAACgagatgaaacaaaaaatagcgAAATG-----CGTGTT-AGAATGACTAAATGAG------TGTTTCG---CAATTAGAAGCACTATC-AAGA---TTTGGATCtgagttgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1994806 195 -  4500979 CGTTTTACGTGTTTGTC---GCAATATATCTAAtatttattg---gattttttagCTCCGACGCAATTAAAA----AGCAGAAATTCAAGCGGAACTAA-ATGTACGGGTT--------GCGAGAAGTG-----------GAGATAAAAA-----GAAATG-----CGTGTT-AGAATGACTAAATGAG------TGTTTCGAAATAATTGAGAGCACTATC-GACA---CTCGATCTGGGggttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     44307 186 +   141584 C---------TTCTGCT---ATAATATATCTATTATTCATTG-GCGATTTT-TAGTTTAAAAGCAATTAAAA----AGCGTAAATTCAAGCGGAACAAA-TTGAAAGGGT---------GTGGGg---------------gagataaaaa-----gaaatg-----cgTGTC-GGAATGAGTAAGTGAGCgt---tgtttcg---aaattaagAGCACTATCTGACTGCGTATAGCTTTAAGAATG
i caeSp111.Scaffold567  C 0 I 1
s caePb3.Scfld02_0       3452826 183 +  4147112 CGTTTTACGTTTTTGTTGGCAATATCTATCAAATATTCATT--GCAGTTTT-CAGTAAAAGGACAATTAAAA----AGCACAAATTCAAGCGGAACGAA--------AGT---------GTATGG---------------GAGATAAAAA-----GAAATG-----CGTGTC-AGAATGACTAAACGAG------TGTTTCG---AAATTAAGAGCACTATC-GACT---CACGATCTGGataaaa
i caePb3.Scfld02_0      C 0 I 890
e caeJap4.Scaffold17934   567544 2383 +   591668 I

a score=1590.000000
s ce10.chrX              5171333 6 + 17718866 TGAAAG
s cb4.chrX              10507453 6 + 21540570 aaaaaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   1995001 6 -  4500979 agaaag
i caeRem4.Crem_Contig0  C 0 I 767
s caeSp111.Scaffold567     44494 6 +   141584 AGGAAG
i caeSp111.Scaffold567  I 1 C 0
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I

a score=-395.000000
s ce10.chrX              5171339 58 + 17718866 CTTTCCGAAGAAC-----ACTTTGAAGAAAATTAGATATTTTTTAT----TAAAGACTTTGGAAATT
s cb4.chrX              10507460 53 + 21540570 --taacgagaaaaaaacgacttggaaggaaaacagaaa------------aaagtgtttatgATATT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold567     44500 49 +   141584 ------------------AGTCAtgaaaaacacagaaaatgtttgttatcataagatttttgaaatt
i caeSp111.Scaffold567  C 0 I 588
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I
e caeRem4.Crem_Contig0   1995007 767 -  4500979 I

a score=464.000000
s ce10.chrX              5171397 16 + 17718866 TTTTAATACATATTTT
s cb4.chrX              10507513 16 + 21540570 TGCGGAtagacatttt
i cb4.chrX              C 0 I 584
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I
e caeSp111.Scaffold567     44549 588 +   141584 I
e caeRem4.Crem_Contig0   1995007 767 -  4500979 I

a score=0.000000
s ce10.chrX              5171413 1196 + 17718866  
e caePb3.Scfld02_0       3453009  890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I
e cb4.chrX              10507529  584 + 21540570 I
e caeSp111.Scaffold567     44549  588 +   141584 I
e caeRem4.Crem_Contig0   1995007  767 -  4500979 I

a score=427.000000
s ce10.chrX              5172609 9 + 17718866 CAAAAAGTG
s caeSp111.Scaffold567     45137 9 +   141584 CAACAAGTT
i caeSp111.Scaffold567  I 588 C 0
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I
e cb4.chrX              10507529 584 + 21540570 I
e caeRem4.Crem_Contig0   1995007 767 -  4500979 I

a score=-415.000000
s ce10.chrX              5172618 13 + 17718866 TAAATCACATTAA---
s cb4.chrX              10508113 13 + 21540570 TAGATaacgaaat---
i cb4.chrX              I 584 C 0
s caeSp111.Scaffold567     45146 16 +   141584 TTGATAACTTGATTAA
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I
e caeRem4.Crem_Contig0   1995007 767 -  4500979 I

a score=-263.000000
s ce10.chrX              5172631 6 + 17718866 AACAAC
s cb4.chrX              10508126 6 + 21540570 aaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1995774 6 -  4500979 AACAAA
i caeRem4.Crem_Contig0  I 767 C 0
s caeSp111.Scaffold567     45162 4 +   141584 -ACCA-
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3453009 890 +  4147112 I
e caeJap4.Scaffold17934   567544 2383 +   591668 I

a score=194239.000000
s ce10.chrX              5172637 613 + 17718866  
s cb4.chrX              10508132 672 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1995780 618 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     45166 621 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3453899 623 +  4147112  
i caePb3.Scfld02_0      I 890 C 0
e caeJap4.Scaffold17934   567544 2383 +   591668 I

a score=94589.000000
s ce10.chrX              5173250 283 + 17718866 CTACTTCATTTTTCTCC-T------------------TCTTATTTGAAAAT-------------GAAAAA--TAAGAAAAAAACGC--------------GAAATC---TGAAATATTTTGTCACGAAAAGCACGAATGTCGCC-----CGGAGAACTAGTTG-TTTTTGCTTCTTGCATTCTGGATAATGAAACTTTTATGAAC--------CATTTCACGTCCAAAAAAAAAAACTTACTGACGCCGCT-------------------TTGAATGCC--AAACG----ACAAAATTT---------GGTGAGTGGT---GGAAACTTGTCGTGCAG---AAAATTTGAA------ATTTTTCTA-ACC----CAACAACTATTGAGAGTGAGAGTGA
s cb4.chrX              10508804 308 + 21540570 CTACTTCATATTCACTC-TTCggcattttttcata--ttctaaGAAGAAAGCAGAAATCT----GAAACG--AAAGAAGgcgaag-----------------aagcaaaaaaaacat-----------aaacttGGCAGTCAACTTGGGCGGCGAACTAGTTG-TTATTG---CTTGCATTCTGGATAATGAAACTTTTATGAAC--------TATTTCacgtc------aaaaaaaatttttgggccgcct-----------------gttgaattctaaaaact-----caAGTTTTTTCTCCGAAGTGTAGTGA----GAAAACTTGTCgggcagaaaaaaatttgaaaaagt-attgCATTTCACA----CTG-GCCaattgagagaga----ga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996398 282 -  4500979 CTACTTCATTCACATCT-TCTTTCTAGTTTACATAcgtctttgaaaaaaatccgcaatattttcgaaatg--aaagaagaaaaaa----------------taagcgAGTGAA-------------------CTGGTTGTCGCCC----CGGCGAACTAGTTG-TTTTTG---CTTGCATTCTGGATAATGAAACTTTTATGAAC--------TATTTCacgtc------aaaaaaatttttgacgcCGCCT-----------------GTTGGAACC---AAACG-----CAAGTATT-------GAGGGAAGTGGT---GAAAACTTGTCGtgcag---aaaatttcaa------atttcactcAACA--------AACTattgagagaga-----a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     45787 279 +   141584 CTACTTCAttcacgtct-t------------------cttctcagaaaaatCTGCAAtatgttcaaaatgaaaaagagaaaaaaac--------------ataggCAAGTGAA-------------------CTGGTTGTCGCCC----CGGCGAACTAGTTG-TTTTTG---CTTGCATTCTGGATAATGAAACTTTTATGAAC--------TATTTCacgtc------aaaaaaattttcgacgCCGCC------------------GTTGAATGTT--AAACT-----CAAGTTTTTCGAGTAGCGAGTGGTGGTGGTGAAAACTTTTCgtgcag-aaaaaatttcac------atttcatTC-ACG--------AGctattgaaagaga-----g
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3454522 274 +  4147112 CTACTTCATGAATGTGgat------------------tttctaagaaaaatccgcaatattttcaaaatg--aaagaaaaaaaagc--------------aaaaaca--taGA-------------------CTGGTTGTCGCCC----CGGCGAACTAGTTG-TTTTTG---CTTGCATTCTGGATAATGAAACTTTTATGAAC--------TATTTcacgtc------aaaaatatttccgaCGCCGCT------------------GTTGAAAGCC--AAACT-----CAAGTTTTTGGCGGTGGGGTGAGTGGTG--AAAAACTTGTCgtgcag-aaaaaatttcac------atttcatTC-ACA--------GGCTAttgagagaga-----a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   569927 330 +   591668 cttctttcttcttcttc-ttcttattgtTT-------ACTTACTGGAAAATCTGGT--------GAGAGG--AAAGGGAAGGAAATATgcattttctttgaaaaagaaagaaaacga---------------cTAGTAGTCGCC-----TGGCGAACAAGCTGTTTTTTG---CTTGCATTTTGTATAATGAAACTTTTATGAACTATGTAAATATTTCGcgtt---aaaaaaagaagttttgaCGCCAGCTGAATgtatgaatgaatgaatgaatgcc--AAACTTgaggcaaattttttttcgaat-------------agaaACTTGTCGTGcag---aaaattctgcattttCATTTTACTG-ACCACCATTGAAACGAGTAAGAGTAA------
i caeJap4.Scaffold17934 I 2383 I 559

a score=17169.000000
s ce10.chrX              5173533 88 + 17718866 AGCAAGACCTCCCGGTTATTAGTTCGGAAGAAAATTG--AAGTTGGGATATTTGAGAAAAAATTGAA-------------AGTGCAAGGAG---TTTTCATTCGAG
s cb4.chrX              10509112 95 + 21540570 ggagaaaCCTCCGGGTTATtagttcagaaaaaattgc--aagttggaatatttg---aatcattgaatagaaaaaaaaatgagtgagagag------ttcatggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996680 80 -  4500979 gagaaaacctCCCGGTTATTAgttcacaaaaaa--ag--agtttggaatatttg---aattattgaaaaga---------gagggagggaG----------TAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46066 67 +   141584 agagaaacctCCCGGTTATTAGTTCacaagaaaattg--aagttgagaaa----------------------------------aattgaa---atttctgcagag
i caeSp111.Scaffold567  C 0 I 7
s caePb3.Scfld02_0       3454796 88 +  4147112 ggaaaaaccTCCCGGTTATTAGTtcacaagaaaattgaaaagtggagaaatttg---aaacattt---------------gggGAATCAAAGCTAtttttttAGAG
i caePb3.Scfld02_0      C 0 I 72
e caeJap4.Scaffold17934   570257 559 +   591668 I

a score=-33.000000
s ce10.chrX              5173621 17 + 17718866 AACAATTGTGTCGCAAA
s cb4.chrX              10509207 17 + 21540570 aagaagtgaaaaccaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996760 17 -  4500979 AAAGACTCACCAGATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46140 17 +   141584 taaaattgagtaaaaaa
i caeSp111.Scaffold567  I 7 I 91
e caePb3.Scfld02_0       3454884 72 +  4147112 I
e caeJap4.Scaffold17934   570257 559 +   591668 I

a score=-1676.000000
s ce10.chrX              5173638 23 + 17718866 TTCAGGC------AC---ATTTC-----TTTCAAATT
s cb4.chrX              10509224 35 + 21540570 agtaagcaaaa--aCCACATTCTATAAGCTTAGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996777 33 -  4500979 ATTGAGCTGACTTACCA-ATTTT---GGTTTCAAGCC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3454884 72 +  4147112 I
e caeJap4.Scaffold17934   570257 559 +   591668 I
e caeSp111.Scaffold567     46157 91 +   141584 I

a score=-7389.000000
s ce10.chrX              5173661 43 + 17718866 ---CTAGTTTGTCAGTGGTTCAGTTGTTCTAATAATCAATGGTTCA----------------------
s cb4.chrX              10509259 35 + 21540570 CTTCTAGGTCGGTAATACTTGATT--CTG-----ATCC----TTTG----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996810 40 -  4500979 TTATTGTTTCTAACAAACGTGATTTCTTC-----ATCAA-AGTTTA----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3454956 59 +  4147112 ---CCGGTTCGATACTGATTTATGTCTTG-----ATTTG-AAGttatgaaaaggaaaacaagtgtgaa
i caePb3.Scfld02_0      I 72 I 3
e caeJap4.Scaffold17934   570257 559 +   591668 I
e caeSp111.Scaffold567     46157 91 +   141584 I

a score=-146914.000000
s ce10.chrX              5173704 380 + 17718866  
s cb4.chrX              10509294 608 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1996850 306 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46248 271 +   141584  
i caeSp111.Scaffold567  I 91 I 32
s caePb3.Scfld02_0       3455018 525 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17934   570257 559 +   591668 I

a score=-20610.000000
s ce10.chrX              5174084  88 + 17718866 AGCT-------------GAATAATCCTTTGAAAATACTTTACAT-----CACCAAATCCGCGC-----------------------TCATTCATT----AATCCGGATACACCACA--------------TCTGAAAAAGTGACACT-----------------
s cb4.chrX              10509902 148 + 21540570 AGCTGGATCATATgtccaaacaattttttttataaaatccaaaactcgTAACTAAATCTTTACGA--AGTATCAATTTCAAGCccatcattttttgttcaattggtttttttttca--aatctagtcCCAACCGGAAA--TGGATCT--------GAATAAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1997156  76 -  4500979 AACT-------------ACACAgatcagtttaaaaaa------------aaccaaat-----------------------------tcatGTTTTGTGCATCCTGT------------------------ACTTGTAA--TGAACTTT------AGGatttt--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3455543 118 +  4147112 -----------------ACGTTCATTTATTCATG---------------AATTCAATACTTCTGAAGAGTAGCA------------TCATATTATCTGAATGGTTTCTGCTCCATAGTAAAATAATGTGATCCGGAAa--caaagtatgaaaaaagagttcaca
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold17934   570257 559 +   591668 I
e caeSp111.Scaffold567     46519  32 +   141584 I

a score=-2032.000000
s ce10.chrX              5174172 171 + 17718866 -------------TGTTCGAGC----------------AATTCC----------TCATTTCC------------------TGTACT------------TTCTGAAAATGCTCATTTTG-AACC--------AGTCGGCAAAAACCG-----------CTTTATTGTCTACTTTTTCTC--ATTCTCATTCTTCACAACC-GCCCTTGACAACAACATCTCAGTAAAACGAGT------------GTGTG----TGCTCCACGAGCACAAGTTCG----CATA--G
s cb4.chrX              10510050 244 + 21540570 -------AGTGCAACTTA--------------------AATTGGAATAATCCGACAATGTCCTGAAACATCTGACTATCATGTACTATAATGTAATTGACTTGATAATA---GTTTCGTAATCCTTCCTTTATACTTTTTATgcccaaattttctttttcc---ctcTGCCCTATTCT--TTGTCATTCCTCAAAAAGTGGCCCTTGACAACTGCATCTAGGTGAACCGCTAAACAGAAGAGTGGTG------CTCTCCACGAGCACTAGTTCAGTCGTGTGCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1997232 161 -  4500979 -------tgttcatatta--------------------agtttt----------cagtttcct-----------------tttgct------------acttcat--------ttttgtgacc--------atatttttACTGCTC-----------TCCT---GTCTACTCcattct--ctttcatttttcgaaaagc-aCCCTTGACAACTGCATCTCAGTAAACGGACA---------------------TGCTCCACGAGCACTAGTTCA----CATCCca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46551 152 +   141584 ctttcgaaaagttttttatttc----------------aacttT----------TAGTATTT------------------TGTTCAACA---------ACTCCAAAAGT----------------------------------ccc-----------ccccTTTGTCTAC----------CTTTCCATTCTTCAAACGC-TTCTTTGACAACTGCATCTCAGTAAACCGGGA------------GTG------TGCTTCACGAGCACTAGTTCG----CATA--A
i caeSp111.Scaffold567  I 32 C 0
s caePb3.Scfld02_0       3455700 213 +  4147112 ttttcgtagCGTACTTTTCtgcggaagtcggaattcgTAGTTTA----------TCGTGTTTT--------------ttatgttcagt----------ttttcaagattcttCCTTTGTTATT--------ATAACTTTTTCACTC-----------TCCCGTTGTCTactattttctttcttttcatttttgaaaaga-gtccTTGACAACTGCATCCCAGTAAAACGGGT------------GTGTATGTATGCTTCACGAGCACTAGTTCG----CATA--A
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold17934   570257 559 +   591668 I

a score=140763.000000
s ce10.chrX              5174343 349 + 17718866 -CTCTTTC-TTCTCTCCAATTTGGCGG--TCC-ACTTGCGATGTGCATGCTGCTCACGCCGAAACCCGCATAGCAACCATTCT-GCTTAGAAACAACGAGAAGCCCG--------TTTGTGACCACTTTC-AAGGGCTACCACCGTTATTATTAGTGAGAC----CTAGAGACCTC----ACGCGCACGCA-CACTTATTGTCGTT--------GTCGTC-------------------------TG-----AAATATGGGTAGGTTTTTAT---TGTAATCTT-CTTGATGAA-CACAATCTCATTTCGGATATTCATCACAAT------------------TCTTTTCCTGTT--------TTCTAGATTCTGCCGACCCGAATGAGCCAACTTTTCCTTGTCCCATTTGTGATCGGAGATTTATCAAATCTAGTTTGGT
s cb4.chrX              10510294 361 + 21540570 -CGTTTTCGTTCTCT---------TTC--TCCAACTTTCGATGTGCATGCTCGCCACAGCCA---CCGCATAGCAACCATTCCTGCCTAGAAACAACGAGAAGCCCGGCCGTGTT--TGTGACCACAC---AAGGGCTACTGCCGTTATTATTAgtgaaagagaaagaaagaccCC----CTAAACGCGAGCTACACACTTGCTTCAATTcgtattcttctttttttgtttcttctgaCCAGATATT-----CAATATGGGtggt----tcg---ttttttttt-----------tgtagcctgATG-------------AAAAA------GACATT-------CATTTCCTGTT--------ATTCAGATAACGCCGACCCGAACGAGCCAGTCTATCCATGCCCAATCTGTGGTCGTAAATTTGTCAAATCTAGCTTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1997393 362 -  4500979 -ctctttc-ttctctccaatttGGCTG--CCCTACTTGCGATGTGCATGCTCGGCACGCCGAGTCCCGCATAGCAACCAGTTC-GCCTAGAAACAACGAGAAGCCCGGTTGTGTTTGTGTGACCACTCTTACGGGCCTACTGCCGTTATTATTAGTGAAAG----CGCGAGACCTC----ACAGACGCGAA-tactttctttcttcaag-------------------------------AGATATT-----CAATATGGGTAGG----TAT---TGTAGTCATAATAGATGACGTGTAGTTTCATG--------TCGTAAGAAT------AATATTTTCCCgccttttcctgtt---------tttagaTAAAGTCGACCCAAATGAGCCAACCTTTCCATGCCCAATCTGTGGTCGCAGATTCATCAAATCTAGCTTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     46703 374 +   141584 -cgctttctttctctccaatTTGGCTG--CCTCATTTTCGATGTGCATGCT---CACGCCGAAACCCGCATAGCAACCATTCT-GCCTAGAAACAACGAGAAGCCCGGCC-CGTGTTTGTGACCACTTCT-AAGGGCTACTGCCGTTATTATTAGTGAGAC-------------CC----AGAGCCTCGCg-catatttcttcttc--------ttttcctcgtGCTTTGTATTCTGCTTAAAAATA-----CATTATGGGTAAG----AAT---TGTAGTAATAACAGATGAA-CACAATTCT----------TCTGTTCGAGTCGATCTAATATG-ACACGCCTCTTCCTGTT---------TTCAGATAACGGAGACCCCAACGAACCAGTGTTCCCTTGCCCAATATGTGGTCGCAAATTCATCAGATCTAGCTTggt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3455913 357 +  4147112 -cgctttctttctcttcaatttgGCTGCCCCTCACTTTCGATGTGCATGCT---CATGGCGAAACTCACATAGCAACCATTCT-GCCTAGAAACAACGAGAAGCCCG-------TTGTGTGACCACTTTC-GAGTGCTACCGCCGTTATTATTAGTGAGCA-------------CCTCGAAGAGCCTCGTg-cacatttcttcttc--------ttactc------------TTCTGACCAGATATAATCTCCAATATGGGTAAG----AAT---TGTAGTAACaatatttt---cacaattttgtt-----catttgttAGAGT--------------GCCGCCTTTTCCTGTT---------TACAGATAACGCTGATCCAAACGAGCCAACCTTTCCCTGTCCAATATGTGGCAGAAAATTCATCAGATCGAGCTTGGT
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold17934   570816 368 +   591668 CTTCTTTC--TCTCTCCAATTTGCCGG--CCC-ACTTG---TGCGCATGCT---AACGCCGAAACCCGCATAGCAACCATTCT-GCCTAGAAACAACGAGAAGCCCGGTCGTGTT--TGTGACCACTTTT-AAGGGCTACCACCAATATTATTAGCGATCT-------------TC----GCAAGCACAC--CACGTGTATTTCTA------------GCTGCTCACGTGACTGACTCGTAAAACTA-----CA--ATGGGTAcg----tacatgtttttttctagtttttg---ctcAGATTGATT-------CTGATCAAAAACTCATCAATTTG-------TGCTTCCTGTCTGTTTTCTTTTCAGACACCGCCGaaaaaaaCGAACCAACTTATGCATGCTCAATTTGCGGTCGAAAGTTTATTAAATCTAGTTTGGT
i caeJap4.Scaffold17934 I 559 C 0

a score=-6617.000000
s ce10.chrX              5174692 18 + 17718866 TTGTCTTTTTGGATTT-------AT-
s cb4.chrX              10510655 15 + 21540570 AAAT--AGTTGGGTC--------AT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1997755 18 -  4500979 AAGTTAAATTGAATCT-------AT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47077  6 +   141584 -----------attc--------at-
i caeSp111.Scaffold567  C 0 I 10
s caeJap4.Scaffold17934   571184 25 +   591668 -AATATTCATGAATTGCGAGCTAATT
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3456270 13 +  4147112 I

a score=109089.000000
s ce10.chrX              5174710 169 + 17718866 ---ATTTTTAAACCTTTTTTTTTATTTTTCTTACAGGAAAAACACGAATCGGCATGTAGAAAGCTTGCATCACTCCACCGAAAACCATTTGATTCTGGAAAACAGAGAGCTAGCGGAAGTGATCTGACCTATGCGGATATCAAAAAAGTTCAACATGAGAAAAATAAGGTA-T
s cb4.chrX              10510670 167 + 21540570 ---TTTTAAAGACActttttctggagt--ttttcAGGAGAAACATGAATCCGCTTGTCGAAAGCTTGCTACTCTGCACCGTAAGCCATTCGATTCGGGAAAACAACGTGCCAATGGAAGTGACTTGACCTACGCTGCCatcaaaaaagctcaaaatgagAAAGCCAAGGTAA-
i cb4.chrX              C 0 I 40
s caeRem4.Crem_Contig0   1997773 164 -  4500979 ---ATTTTGTGA---TGGTTCTCGGTT--CCTCCAGGAGAAACATGAGTCCGCCTGTAAGAAGCTTGCTTCTCTCCACCGTAAACCATTCGACTCCGGTAAACAACGTGCCACTGGCAGTGACTTGACCTATGCGGCAatcaaaaaagctcaaaacgAGAAGGCTAAGGTAA-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold567     47093 161 +   141584 ---atttc-aaa---ttattttcagag---tttcaGGAAAAGCATGAGCAAGCGTGTAAAAAACTGGCAACTCTTCATCGTAAGCCATTCGATTCTGGTAAACAACGTGCCAATGGAAGTGATTTGACGTATGCAGCTATCAAGAAAGCCCAGAATGAAAAGGCTAAAGTA--
i caeSp111.Scaffold567  I 10 C 0
s caePb3.Scfld02_0       3456283 162 +  4147112 ---ATTCCTGAA---acgttctgaaat---tttcaggaaaaacacGAACAAGCTTGTAGAAAGCTAGCCACTCTTCATCGTAAGCCatttgattctggaaaacaacGTGCTACCGGAAGTGACCTGACATATGCTGCCATCAAGAAAGCGCAGAACGAAAAGGCTAAGgta--
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold17934   571209 169 +   591668 ATTATGTTATCA---CTCTCTCTAAGTACTTTCTAGGATAAGCATGAAACAGCGTGCAAGAAACTCGCATCTCTCCACCGCAAGCCATTTGATTCCGGAAAACAACGAGCCAATGGAACTGATATCACTTACGCTGATATTAAGAAAGCACAAAATGAGAAAGCAAAAGTGA-
i caeJap4.Scaffold17934 C 0 C 0

a score=-18085.000000
s ce10.chrX              5174879 46 + 17718866 ------TTCATTCAAAT------GAAATCTTGTGATCACTGGATTTCAATGTTCAAAG
s caeRem4.Crem_Contig0   1997940 37 -  4500979 ------GTCAGTTTAAT------CAGAACCAC-TATTTTTGTGTTACATA--------
i caeRem4.Crem_Contig0  I 3 I 3
s caeSp111.Scaffold567     47254 38 +   141584 --------CAGTCACAC--------GCGTTTC-CATCAT-ATATTCCATAGTCCAA--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3456445 39 +  4147112 --------atatgaaattttt-tgagcgtcTCTCATCTTGATTTTGC--------A--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   571378 34 +   591668 GAATCATACGATTAAAAGTTCATGAATGCTTC-TA-----------------------
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10510837 40 + 21540570 I

a score=154333.000000
s ce10.chrX              5174925 160 + 17718866 TTCAGAATGGTGGCGTGTTTCCGAGACCACAAACAAACTGGCGTGAACGTCATGGTAACTTCATAGACGCGGTTTCATCATCGAAACGTGTTGATTATGCGTTGAAAACAGGCGCACCGCTTCCGCCTCCACCAAAAACTGCGGTTCCCAGTGGTGAGTT
s cb4.chrX              10510877 160 + 21540570 TCCAGAACGGCGGAGTGTTTCCAAGACCACAAACCAATTGGAGAGAACGTCACGGCAACTTCATCGACGCTGTTTCCTCGTCAAAACGTGTTGACTACGCTCTGAAAACGGGTGCACCGCTTCCACCACCACCGAAAACTGCAGTTCCAAGTGGTTAGTT
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   1997980 160 -  4500979 TCCAGAATGGTGGGGTGTTCCCGAGGCCACAGACAAACTGGCGAGAACGTCATGGCCATTTCATCGACGCGGTTTCATCATCCAAACGTGTCGACTATGCACTCAAAACTGGGGCACCATTGCCACCACCACCAAAAACTGCTGTTCCAAGTGGTTAGTT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold567     47292 158 +   141584 TTCAGAACGGCGGAGTTTTTCCAAGACCGCAAACAAACTGGCGTGAACGTCATGGCAATTTCATCGATGCAGTTTCCTCTTCGAAGCGAGTCGACTATGCTCTGAAAACTGGAGCTCCATTACCACCGCCACCGAAAACTGCTGTGCCGAGTGGTGAG--
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3456484 160 +  4147112 TTTAGAATGGTGGAGTTTTTCCAAGACCACAAACCAACTGGCGTGAACGTCATGGAAATTTCATCGATGCAGTTTCGTCATCCAAAAGAGTCGATTATGCTCTGAAAACTGGGGCTCCGCTACCACCACCTCCAAAAACTGCTGTTCCAAGTGGTCagtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   571412 160 +   591668 TTCAGAACGGAGGAGTTTTTCCACGTCCGCAAACAAACTGGAGAGAGCGTCATGGAAACTTCATCGACGCCGTGTCCTCATCAAAGCGGGTCGACTACGCTTTGAAAACGGGAGCTCCGCTTCCACCGCCACCGAAAACTGCCGTCCCGAGCGGTCAGTt
i caeJap4.Scaffold17934 C 0 I 1121

a score=-9281.000000
s ce10.chrX              5175085 38 + 17718866 ------TTTTAATGATCACGAGACTTATGAAAAACGCAGGTGGA--
s cb4.chrX              10511037 32 + 21540570 -CCATGTTGCA---------AGTTGCTC--AGAGAGCAGGTG--AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1998140 36 -  4500979 GAAATGTATCAGT-----CTAGATTTTT--GACGTGCAGGTC--G-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47450 28 +   141584 -----------TT-----CGAAGTTCTTAAAATGAGCAGGTGAA--
i caeSp111.Scaffold567  C 0 I 318
s caePb3.Scfld02_0       3456644 35 +  4147112 --taggttttttt-----tgagaattttcaaatgagcaGGTG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   571572 1121 +   591668 I

a score=281.000000
s ce10.chrX              5175123 4 + 17718866 AAAG
s cb4.chrX              10511069 4 + 21540570 CTAG
i cb4.chrX              C 0 I 34
s caePb3.Scfld02_0       3456679 4 +  4147112 ATAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e caeSp111.Scaffold567     47478 318 +   141584 I
e caeRem4.Crem_Contig0   1998176 0 -  4500979 C

a score=-2883.000000
s ce10.chrX              5175127 27 + 17718866 AAGATTTCAAAGTATTTAGCTGAATAT------------------------
s caeRem4.Crem_Contig0   1998176 20 -  4500979 ----------AGAGTTTGATGTATCTTCTG---------------------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3456683 41 +  4147112 ----------AATGTTTgtcttcactttttgttgagaattcagttgaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e cb4.chrX              10511073 34 + 21540570 I
e caeSp111.Scaffold567     47478 318 +   141584 I

a score=-12742.000000
s ce10.chrX              5175154  94 + 17718866 ATAGAATATGT---TTATGAATTCTCTA---TCTTTGAAAATGAGTGTGAAATTAAATCGAGGAAGAAAGAGAGAGT----TGTTTCAAATGAAGCGTAAGATT----
s cb4.chrX              10511107  99 + 21540570 --CTAGTATGCATATT-TTAATGTTCAAGTGTGTTTGAGAAAGAGGGAGAAA--GCAAGGAAGGGGGATGTAATGGTCCTTGAGTTTCAATCAAGCGTGAA--TCG--
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   1998198  49 -  4500979 --CTACTATGT--------------------TGTTTCACA-----------------------TGGGTCACAA--------GATTTCCTCTTACGTGTGGG--T----
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3456724 100 +  4147112 -acTCCTACGcactttaaaaatgtttttgagt-tttcggagtgaACTTTGGG--AAATCGAAGAgcataataattattttccggCTTCGATGAAGCGTGAA--C--TT
i caePb3.Scfld02_0      C 0 I 105
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e caeSp111.Scaffold567     47478 318 +   141584 I

a score=-990.000000
s ce10.chrX              5175248 66 + 17718866 TCACCAAGAATAATTATTCACACATAATTAAACTTGAAGTCTTATGGAACATTTTATGATGAGGAA--
s cb4.chrX              10511206 62 + 21540570 GATCTAAGAGTA--TAATTGTAACAACTTGTATT----ACTCAAGGAAATATCTTAAAATAATAGGAA
i cb4.chrX              C 0 I 106
e caePb3.Scfld02_0       3456824 105 +  4147112 I
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e caeSp111.Scaffold567     47478 318 +   141584 I
e caeRem4.Crem_Contig0   1998247  0 -  4500979 C

a score=-996.000000
s ce10.chrX              5175314 131 + 17718866 GGCGTGGG-ACATGCGTCAGTCCTTGAAAACGCATATA---TATATAAAAACCTAAAAATGCTGGCCAAACGCAGTCCGGGCTTTTCTTCTGTCGGTTTCAGTTTAATCAAAGCCCCACCGCTAAAATAAGCTTG
s caeRem4.Crem_Contig0   1998247 101 -  4500979 GGTGTAGGCAGAAGTATGCATATTTTAGTGTTCATGTAACTAAtatagaga---aagagagcagAACAATTACCGCTC-------------------TTGAGTTCCAATGAAGC------------GTAAATTAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3456824 105 +  4147112 I
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e cb4.chrX              10511268 106 + 21540570 I
e caeSp111.Scaffold567     47478 318 +   141584 I

a score=-13668.000000
s ce10.chrX              5175445 340 + 17718866 CCC-------------------TACAACTTTGGAGTTCCGTGTGTCAATTTAAATCAATTTTAAAT----ACAGTAAATACATAACCGAATCAGATCACTGTCAGACCATTGCACACAGATCTTCATAAACCAACACCGGACGACGAAAGTCTGGAATTCAAATACCTAACAAGTGTAAATTTGAATTAGCCTTTTTGCAGTCCTAGATACTAATA---CATTTCCATCTCCAAAATTAACCACAATGCGACCTCTTAAAGTAATGCAGTTGGGTGCAAATTTAACAGAGGAAATACAGTGGAAGTTCATTTTC---TTGTTA--------TTTGCGTCATAGACGTTGGGAAAACAAGATAATTAA-AATTACAAGT
s cb4.chrX              10511374 213 + 21540570 CCC-------------------TTCAAGTTGGAGGTGC-----------------CGTTTTTGTACCGGCTCAGCTACTA-------------------TGTCAGAAGATT----------CGCTGCCGACCAATGTCAAATTAgaa----------------------------------ttcaattaatttttgtg-tGTTAT-GTCACTAATTTCCTTTCcgagtttttagaat-------------------------------------------tttgacgCAT--------TTTAATTGGTATTTTCGGTCTTTTATGAAATACTTTGT---ATCGc-------aaaaaacaaagaacaa-AAT--CAAGC
i cb4.chrX              I 106 C 0
s caeRem4.Crem_Contig0   1998348 232 -  4500979 TCCAGAAACAGATCATAATATATACAAGTTTGAATTAC------TCAA-------CTGTTTCATAC--GTACGACAAGAA-------------------TTTAGAATGACT---------------TTTACAAGAGCTGGGGAGTGA----------------------------------TCGAATGAAATTCActgttgtttt-gaaattcatg---TGTCTGCGTCATTAG----------------------------------------------TTCTACGcatgagaaaactgaaaaggtTGTTTTC---CTGTTA-AAAACAAGCTGTgacattga-------aaattaaaaagatcAATGAT--CAATC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3456824 105 +  4147112 I
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e caeSp111.Scaffold567     47478 318 +   141584 I

a score=-4445.000000
s ce10.chrX              5175785 26 + 17718866 TGACAATTCTTT------GGCTTTATCCTTAT---------
s cb4.chrX              10511587 10 + 21540570 ---gaaa-------------------cctcat---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1998580 14 -  4500979 ---CTAAAC---------------TTCCCCGT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3456929 41 +  4147112 TGAGAAATCTTTGATAAAGGCTTTTTCCTTGTTgttatcca
i caePb3.Scfld02_0      I 105 I 15
e caeJap4.Scaffold17934   571572 1121 +   591668 I
e caeSp111.Scaffold567     47478 318 +   141584 I

a score=60.000000
s ce10.chrX              5175811 2 + 17718866 TC
s caeJap4.Scaffold17934   572693 2 +   591668 TT
i caeJap4.Scaffold17934 I 1121 C 0
e caePb3.Scfld02_0       3456970 15 +  4147112 I
e cb4.chrX              10511597 0 + 21540570 C
e caeSp111.Scaffold567     47478 318 +   141584 I
e caeRem4.Crem_Contig0   1998594 0 -  4500979 C

a score=107418.000000
s ce10.chrX              5175813 270 + 17718866 AAATTTCTAACT---ATTTTCAGACTATGTGCAATGCGAATACTGCAGTCGAAACTTTAATGCTGCAGCAGCAGAAAGACATATTCCATTCTGCAGGTTGGAATT----------------------ATATACATTCATCAAACTCCCAA-CTCAATA-ATATTTAT----ATACAGAGAACAGGCAACGCGAAAACAAGGCGGCAATTTGAAATCCTCTGGCGGAAATCGCGCGCTCACCG---GCAACTACAGAAGCACGCCTTCGAAAAATGAAGTGCG-------------CGCTCTAGAATTTATGGCAATT
s cb4.chrX              10511597 283 + 21540570 ----------------ttttcagactacGTTCAATGTGAGTACTGTAGCCGCAATTTCAACGCGGCTGCTGCTGAGAGACACATTCCTTTCTGCAGGT---AATT---TTTACAGTCAAACGGAAGAGCACAAG---ACCACCTTCGTGTTCTTTCTA-ATAAACAAAC--TTTCAGAGAACAAACAACACGAAAACAAGGTGGC------AAGTCATCTGCCGGAAATCGCGGGCTCACCAGCAACAACTACAGAAGCCTACCATCAAAACATGAAGTGCGGAATCCCTCAACATAATTAGAAATtgatagaaaat
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   1998594 277 -  4500979 ----------------ATTTCAGATTATGTACAATGCGAGTACTGCAGCAGAAATTTCAACTCTGCAGCTGCTGAAAGACACATTCCATTTTGCAGGT---AACT---GTTCCATCCAAATG-----ACATATGTTTGTCACAATTGGGGCCTTAAAAGACTAATGAGT--TTTTAGAGAGCAAGCAACACGAAAGCAAGGCGGCAGTTTGAAATCATCTGCCGGAAATCGTGCTCTCACCAGCAACAACTACCGAGCTCTCCCCTCAAAACATGAAGTGCG-----------CTTACTTTCACATTTATaggaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     47796 263 +   141584 AAATGacgaatt---gttttcagactaTGTTCAATGTGAATACTGCAGTAGAAACTTTAACGCTGCAGCAGCTGAGAGACACATTCCGTTTTGCAGGT---AATT--------------AAG-----ATGCTTG-----TAGTTTCATAATCTGAACA-ATG---------CTACAGAGAACAAGCAACACGAAAACAAGGTGGAAGTTTAAAGTCATCTGCTGGTAGTCGTACACTCCAAA---GCAGCTATAGAAATGTACAGTCGAAACACGAAGTGAG-----------AATACTTTCAAACTCATAGCGAca
i caeSp111.Scaffold567  I 318 C 0
s caePb3.Scfld02_0       3456985 270 +  4147112 aaaaGACCATTCTTGATCTTCAGATTATGTTCAATGTGAGTACTGCAGCAGAAACTTCAATGCAGCTGCTGCTGAACGGCACATTCCATTCTGCAGGT-----------------------------GTGCTCA-----AACTTTCGAAAcctaaa-a-atgagaaagtgttTACAGGGAACAAGCCACTCGTAAACAAGGAGGCAGCATGAAATCTTCCTCAGGAAATCGTGCTCCTCCAACTGGTAGCTACAGAAATCTACAATCAAAACATGAAGTGCG-----------CTCACTTGagaattcattaatttt
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17934   572695 262 +   591668 AAACTAGTGAAC---ACTTCCAGATTATGTGCAATGCGAATATTGCAGCCGTAATTTCAACGCGGCAGCCGCCGAGAGACACATTCCGTTCTGCAGGT-----TTTGTTTTGTGACCAAATC-----ATAATTG----------TTTTAA--TGAAAA-ACAATTACAA--TTTCAGAGAACAATCAAATAGAAAACAAACAGGAAGTTTAAAGTCCTCCGCCGGGAGTCGTACCCTTTCTG---GAAATTATCGAAGCTTGCCTACCAAACAAGAAGTAAT-----------TTTATTC---AGTT----------
i caeJap4.Scaffold17934 C 0 C 0

a score=-848.000000
s ce10.chrX              5176083 18 + 17718866 TTCTTTTCCTTTT----------TTTGG
s caeRem4.Crem_Contig0   1998871 10 -  4500979 --------ctttc----------gtttt
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold567     48059 18 +   141584 ttgatttattttc----------tccgt
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3457255 18 +  4147112 ttgttttatcttt----------ttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   572957 25 +   591668 ---TATTAATTCTATGAAAAAGGTTTGT
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10511880 25 + 21540570 I

a score=171775.000000
s ce10.chrX              5176101 291 + 17718866 TTT---------CAGGGAAAAAAACAAGAGTCGTCAAGTAGAAACGGATCTGCAGAGCGGAAACCAACCACAA------GAGGAAGAGATGGAAGTCTTTTAAGGGCTCGTCGAGATGATTCAAACGACATCACTTCAAGAAGGAAGTCAGTGTTTGCGTACAAT------------AATTGAAGAG----TATTTGGTT------AATTTAGGTCTCTGGACACTAGAACTTCTTTAACAACTGGTCAAGCTTCCAACCGGCACACGTCACTTTCGGCAGGAATGCGCCCAACACTTCCTCCCATGACTCCTTCTAGCAAGTAAGT-A
s cb4.chrX              10511905 296 + 21540570 TTT---------CAGGGAAGAAAACAAGAATCATCGAGTCGAAACGGATCTGCCGAGCGGAAAACAACCACAA------GAGGAAGGGACGGAAGCCTATCGCGAGCACGTAGAGACGACTCAAACGACCTGACTAATAGAAGGAAGTATG---TTGTGTATTGTT----TTTT---AATTGAGCTG---ATTTAtggtt---cttttttcagatcgcTTGAGACACGATCTCAGTTGACTACGGGCCAGGCAAACAACAGAACTACGTCATTGTCTGCTGGAACTCGTCCAGCACTTCCACCAATGACACCAAGCAGCAAGTACGT--
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   1998883 303 -  4500979 tTT---------CAGGGAAGAAAACAAGAGTCTTCGAGTAGAAACGGATCTGCTGAACGGAAAACTACAACGA------GAGGAAGGGACGGAAGTCTCTCGAGAGCACGTAGAGACGACTCAAACGAAATAACTAACAGAAGGAAGTATG---TTGTGTTTTGTTCGAGTTTTGAGGATTTAACTG----TATAGATTT---CCTTGTTTAGATCTCTTGAGACAAGATCTCAGCTAACCACGGGGCAAGCCACTAATAGAAACACGTCGTTGTCTGCTGGAATGCGTCCATCACTTCCGCCAATGACTCCAACCAGCAAGTAAGCT-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold567     48077 295 +   141584 ttt----------agggaagaaaacaagagtCTTTGAGCAGAAGCGGATCTGCAGAACGGAAAACTACTACGA------GAGGAAGAGACGGAAGTTTGTCAAGGGCACGTAGAGACGACTCAAACGACATTACTAACAGAAGAAAGTATG---TTGTGATTTGCTC----------AATCTTGCTGGT-ATATATGAAT---AATTATTTAGATCTCTTGATACAAGATCTGCGTTGACCACTGGACAAGCTACTAACAGAAACACATCACTTTCCGCTGGAATGCGTCCGTCACTTCCGCCAATGACGCCGACTAGCAAGTAAGC-A
i caeSp111.Scaffold567  C 0 I 79
s caePb3.Scfld02_0       3457273 309 +  4147112 tttgttatttttcagggaagaaaacaagaatctTCGAGTAGAAACGGATCTGCAGAACGGAAACCAACTACAC------GGGGAAGGGACGGAAGTCTCTCTAGGGCACGTAGAGACGACTCGAACGAAATTACTAGCAGGAGGAAGTATG---TTGTGTATTGCTC----------AAATCAGACAATAATATGTAATTTCCTGTTCTTCAGATCACTTGAAACAAGATCTTCCTTGAGCACTGGACAAGCCGCTAACCGAAACACATCACTCTCTGCTGGAATGCGTCCAACGCTTCCGCCAATGACCCCTACTAGCAAGTAAGA-C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   572982 289 +   591668 TTT---------CAGACAAGAAAAGAAG---CGACAAGCAGAAACAGTTCAGTAGAGCGCAAGACAACAACAACAAGCCGCGGGAGAGATGGCAGCCTTTCGAGGGCTCGTCATGATAGTTCAGAAGATTTAAACAATCGTagaaagtgaaaaattaagaatgaGTAAA--------AATGCAAATG----TGGGTGTTT--------TTCAGGTCACTAGAGACTCGTTCACAGCTTTCCACGGCGCAAGCAAACTCGAGAAACACATCACTTTCCGCTGGAATGCGTCCCACTCTTCCGCCAATGACACCTTCT---AAGTA-----
i caeJap4.Scaffold17934 C 0 C 0

a score=-7065.000000
s ce10.chrX              5176392 40 + 17718866 CATCATGTGATATTATTAAGTTGAACCAG----------------AATTAGTATCT
s caeRem4.Crem_Contig0   1999186 32 -  4500979 --------CACATCATAGGGTGAAACGAG----------------ATGTGATATTA
i caeRem4.Crem_Contig0  C 0 I 19
s caePb3.Scfld02_0       3457582 36 +  4147112 --------------------CAAAACGGGACTATATATTCGGACCACATAATATTA
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold17934   573271 13 +   591668 ------------------------------------------ATTCTTGAAAATT-
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10512201  0 + 21540570 C
e caeSp111.Scaffold567     48372 79 +   141584 I

a score=0.000000
s ce10.chrX              5176432 12 + 17718866 CGCTAGTTTATT
e caePb3.Scfld02_0       3457618 14 +  4147112 I
e caeJap4.Scaffold17934   573284  0 +   591668 C
e cb4.chrX              10512201  0 + 21540570 C
e caeSp111.Scaffold567     48372 79 +   141584 I
e caeRem4.Crem_Contig0   1999218 19 -  4500979 I

a score=-2026.000000
s ce10.chrX              5176444 49 + 17718866 AGGGAGTCGCGTGCAGAGAATTATTTTTAAAAAAT--TGTATACTTTTCTA
s cb4.chrX              10512201  2 + 21540570 -------------------------------------------------TA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   573284 39 +   591668 ------------GTAGAGAATTTTCTTTAGAAAATactgtgaaattttttc
i caeJap4.Scaffold17934 C 0 I 35
e caePb3.Scfld02_0       3457618 14 +  4147112 I
e caeSp111.Scaffold567     48372 79 +   141584 I
e caeRem4.Crem_Contig0   1999218 19 -  4500979 I

a score=-64.000000
s ce10.chrX              5176493 48 + 17718866 AAAAGGGATACAGTATCGAAATATATGAGACCCATATTAATGGTAAAA
s cb4.chrX              10512203 36 + 21540570 AAAATAGATAGAATCTTGAGAT-TATG--------TTTAGTAGCG---
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3457618 14 +  4147112 I
e caeJap4.Scaffold17934   573323 35 +   591668 I
e caeSp111.Scaffold567     48372 79 +   141584 I
e caeRem4.Crem_Contig0   1999218 19 -  4500979 I

a score=-18556.000000
s ce10.chrX              5176541 325 + 17718866 -TTTTTTGACATAAAAACTTTTGTATCACTAATTCAAACTGAT--TTGGAAAGGTGTGTAAACA-ACATTTTTATCATCACCTACTTAAGAAATGACAGTGTATAACGAATGTCTTAGAA---TCGATTTGACTCATATTTTTAAAGTATCGACAACCCTGACTGTAATTCTCTAGACACCATACAGACCTCCCTTTTTAACTTGTTTCTGGAGTTCGTTATTCCGTTTTGATAAACCACAAAAGTAGATTGCATTTGTTTTTTTTTCTGGTTTTTAGTCTTCAAGAGTATTCGTAGTAATAAATTTCCTTGAAACAACATCTCAAAACCTC
s cb4.chrX              10512239 126 + 21540570 --CTCATGAAGCAAATATAACTGT-------------ACTGATTGTTGTAAACATGGCAAAACGCGCATTCATATT----------------------GTGTCTAGCG----------------------------------------GCCAACAACTCAGA------------AGAAAACA-------------------------ACTGAAA--------------CTGCTATATCCTGAAAGTA----------------------------------------------------------------GAAACAA--------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17934   573358 182 +   591668 tttttttcctttaaaagctttaaa-----------aaaatgat---------tgtgtgcaaaca--------cctc---------------gACGacaaagtgcagaaaatttttcgaaacgtccgagctgaaatccaatttt-----ttcaatgtttcata-----------------tca-------------------------atcggat-----cattctgcACATTTTTGCCTTGCAATTAAATAGCAACC----------------------------------------CAATAATTTCGTTTGAAAGC---------------
i caeJap4.Scaffold17934 I 35 C 0
e caePb3.Scfld02_0       3457618  14 +  4147112 I
e caeSp111.Scaffold567     48372  79 +   141584 I
e caeRem4.Crem_Contig0   1999218  19 -  4500979 I

a score=-5131.000000
s ce10.chrX              5176866 35 + 17718866 GAAACTATGTATGTTA---GTTTTCACAAATAGTGTGT
s cb4.chrX              10512365 16 + 21540570 -------------TTGCACAATT---AGAACA------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   1999237 38 -  4500979 GAGATTCTTGATGTTAATCGATTTTGAAAACACGCTGT
i caeRem4.Crem_Contig0  I 19 I 5
s caeJap4.Scaffold17934   573540 16 +   591668 CAAACAATATATATTC----------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3457618 14 +  4147112 I
e caeSp111.Scaffold567     48372 79 +   141584 I

a score=0.000000
s ce10.chrX              5176901 4 + 17718866 TTGA
e caePb3.Scfld02_0       3457618 14 +  4147112 I
e caeJap4.Scaffold17934   573556 0 +   591668 C
e cb4.chrX              10512381 3 + 21540570 I
e caeSp111.Scaffold567     48372 79 +   141584 I
e caeRem4.Crem_Contig0   1999275 5 -  4500979 I

a score=77247.000000
s ce10.chrX              5176905 181 + 17718866 AGAAGAAGTAGCTCTGCAAAACGAGA--TGCACCACTA-CAACAGTCTTCTACTCCACAACAACGCCTAAAAACACCGTGAGT----------TTTTC----TTCACGCCAATTATA-----TTTTGTGTCGTCTGCATTTCGTTTACCCAT-TTCAGAATCTCCTTGGCTCAACGTATGAGTAAAATGAGCATCAACCACTGA
s cb4.chrX              10512384 177 + 21540570 AGGAGAAGCAGTTCTGCCAAACGAGA--TCTT-------CCACCAAATCCCACCACACACCAACGTCTAAAAACGCCGTAAGTATAAAATATATTCCtga------------ttataa---tttttgagacGTGGGCAT---GGTTAACCTTATTCAGAATCTCCCTTGCCGAAAAAATGAGCCGATTGAACACCAATCAATAA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   1999280 176 -  4500979 AGACGAAGCAGCTCTGCCAAACGTGA--TGCTCCGCAA-CCACAAACGTCTACTCCACAACAACGTCTCAAGACACCGTAAGT----------TTCCCGC--TAGaacct--ttttga---tttttgtgctGTGTGCA--------ATTCCTTTTCAGAATCTCACTGGCCGAGCGGATGAACAAAATGAGCATCAACCACTAA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold567     48451 182 +   141584 AGGAGAAGCAGTTCGGCTAAACGTGA--AGCACCA----CAACAGGCACCAACGCCACAACAACGTTTGAAAACCCCGTAAGT----------TTATTTA--CTGAATCTATATATAA---TTCGTGTGATGtgtatatttttgtttgCCGT-TTCAGATTATCCCTGGCTGAAAGAATGAACAAAATGAGAGTCAATCActga
i caeSp111.Scaffold567  I 79 C 0
s caePb3.Scfld02_0       3457632 187 +  4147112 AGGAGAAGCAGTTCTGCCAAACGTGA--AGCTTCAGCT-CAACAGGCACCAGCTCCCCAGCAGCGTTTGAAAACTCCGTAAGT----------TTATGCGATCCAAGTTTCATCCTGC---TTTTTGTGCTGTGTGCATTTCGGTTAACctt-ttcagaatctctttGGCCCAGAGAATGAACAAAATGAGCATCAACCACTGA
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold17934   573556 183 +   591668 AGAAGAAGCAGTTCTGGCAAACGCGAGCAGCAGCAACAGCAACAATCGAGCACCCCGCACCAGCGACTCAAAACTCCGTAAGT----------CTGACGC--ACCGCTCCCTTCCAGGCTTTCTTTGTGTTGTG-GCATTTGCGT--------TTCAGAGTTCCTTTGGCCAATCGCATCAGTAAAATGAGCATCAATCACTAA
i caeJap4.Scaffold17934 C 0 I 56

a score=-11812.000000
s ce10.chrX              5177086 50 + 17718866 C-TTGATTTATTCATTTTTC-TTCACAATTTGGTTTTCATATTTGGTTCAGT
s cb4.chrX              10512561 38 + 21540570 C-C----GCCTGCATTTTTG-TTCTCA-------ATATTCGTTTTGGTTTC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   1999456 38 -  4500979 C-c-----cacatatttttgtttctcg-------tGCCTGGTcttattcat-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     48633 33 +   141584 t-t-----tttatttcgtGC-TTCTTG-----------CCATTTTATTCAG-
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3457819 26 +  4147112 CAT-----TATATATTAT--------------------CCGTGTGCTTCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   573739 56 +   591668 I

a score=41700.000000
s ce10.chrX              5177136 331 + 17718866 TCCCCTCATTATCCCATCC----------CATTGTTT--------AA-----TTGCCTAATTTTTATCTCTCTGCTTGT-------ATATTTTTTCAATGGTTCAAGGTG---GTAATATGATCATATTTCCTTTT--GAAAAATT------------------AATAGA-----------------------------GTTTACAGAGCGTC---GACTACAACAACAGCGAGT------CGTAGTGGTTCGAGAACATCTTCCAGAGCTTGTCCGCGTGACGATTCCCGCGACTCCCGTCTCTCTCAAGCCAAAAACAACAGTCGTAATAATTCTCGCTCTCGTATTTTCTGATTTTCAAATTCTGTATACTTCTGTTTTTTTTTAAACTTTTTTGAATA---------CTTTAACA--TATAAA-------------AATGCA
s cb4.chrX              10512599 389 + 21540570 ATCTTTTGACAGCTATTTTATCCAAATCACATTGCTT--------AT-----TTATCAGTTTTGTAACCCTCTGCTTGTATTGGTATTGATCTTT---ATgtttcaaaca---aaaagtttgcAGTTTATCGAGTT--GTAAGATTGCTAGTCGTAATTTTTCCTATATACCGC-------------------------TTTTCTAGAGCACCTAaaaccaccaccaccgccagTGCAAGCCGTAGTGGATCGGGAAGTTCTTCAAGGACTCGTACTCGTGATGAATCTCGTGAATCTCGTTTATCCCAAGCCAAAAGCAACAGTCGCAATAATTCTCGCTCCAGAATCTTCTGATTGgt---ttct------ttctcatttttttttaattttttcttttaatacCTTCTTTTCATCG--AATAAACTTTCGTATTCTTCAGACA
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   1999494 358 -  4500979 ttctttcaatatttgaTTT-----AATCACAACGCTT--------AT-----CTATCAGTTT----ACCCTTTCCCCGC-------TTGATTTCTTCGGTTTTTTAAATGCACAAAATAATGCAATTTTAC-AGTTCCGTAagatttcaaatcat--ttttttcaaaggaacACAATA---------------ATAAATGTTTACAGAGCTCCTAGAACCACAACTACTTCCAGT------CGCAGCGGATCGAGAACTTCTTCGAGAACCCGTACTCGTGATGAGTCTCGTGAATCACGTCTTTCTCAAGCAAAAAGCAACAGCCGTAATAATTCTCGTTCCCGCATCTTTTAATTTG--------------------TTTGCCTTCAATTTCATGTCACAATTCACGAGctataaaa--tataaa-------------aaaaca
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold567     48666 342 +   141584 -TTTCATATTATTATTTCC----------CAATGCTT--------ATC----CTATCAGTT---------TTTTCCTGC-------TTGTATTATTCTTGgtttccattc------a-tttcagaGTCATCGGTTT--GTAAG---------------------AAAAGAATCAGATATACAAGTTGACTTAgccatcttttttcagagctgCTCGAACTACCACAGCCGCCAGT------CGCAGTGGTTCCAGAACATCATCTCGAACACGTACTCGTGACGAGTCACGCGAATCTCGTCTTTCTCAAGCAAAAAGTAACAGTCGTAACAATTCTCGTTCacgaattttttaattttc---tctc------ttctcttctctatttttttatcttgttccactctt---tttcagta-taataat-------------gaa---
i caeSp111.Scaffold567  C 0 I 29
s caePb3.Scfld02_0       3457845 358 +  4147112 CCCTTAAATTATCAGTTCT----------TGTTTCTTTCATCCACATCACCGCTATCAGTTC------TCTCTCCTTGC-------CTGTATTATTTTACGTTcacaatg------attttcagattcttcaacTT--GTAAGCTTCCTTATACC--cgtgttcaaaaaagtca-------------------ttgttcattttcagagcagctcGTACTACTACCGCCGCCAGT------CGCAGTGGATCGAGGACATCGTCTAGAAGTCGTACTCGAGATGAATCTCGCGAGTCTCGTCTCTCTCAAGCAAAAAGTAACAGTCGTAATAATTCTCGTTCTCGAATCTTCTAATTTTA---TTCCG-----TGCTACTCTCTGTCTCATAAATGTG-TCAATTC-----TTTCAGTAGTTATAAC-------------AAG---
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold17934   573795 269 +   591668 TTCTTTCGTTTTCCCACCC----------GCTTAATG--------AA-----TCCTAAGTTT-----CTCTTAAATTGT---------------------------AAGG------ATGCTCCCGTGCCTTCAGTT--ATAATCAT-----------------------------------------------------TCATTCAGAGCA---------ACCACAGTTTCAACA------CGCAGCGGTTCAAGAAGTTCTTCAAGAACTCGTACTCGCGATGAATCCCGAGAATCTCGTCTCTCACAGGCCAAAAACAATAGCCGTAACAACTCCCGCTcgcgtattttttaattttt---tcacc-----tATTTAATTGTATTGGAATATGTCATCCAA--------ATTCA------------------------------
i caeJap4.Scaffold17934 I 56 C 0

a score=-2926.000000
s ce10.chrX              5177467 24 + 17718866 CTTTTCCTGTAAAGCTGTTTGTCT
s cb4.chrX              10512999 21 + 21540570 ---TACTTCCTTGTCTGCTTTTTA
i cb4.chrX              I 11 I 14
s caeRem4.Crem_Contig0   1999859 21 -  4500979 ---cagttcttttcatgttttttg
i caeRem4.Crem_Contig0  I 7 I 9
s caePb3.Scfld02_0       3458210 24 +  4147112 GTTTACTCAAAAACCTGTTTGATT
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold17934   574064 15 +   591668 -----ATAataaatatgttt----
i caeJap4.Scaffold17934 C 0 C 0
e caeSp111.Scaffold567     49008 29 +   141584 I

a score=-3270.000000
s ce10.chrX              5177491 9 + 17718866 CAAAAAATT
s cb4.chrX              10513034 8 + 21540570 CAGAGATG-
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   1999889 7 -  4500979 -AGTGATT-
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold567     49037 9 +   141584 CGGAAAATT
i caeSp111.Scaffold567  I 29 C 0
s caePb3.Scfld02_0       3458234 9 +  4147112 CAGTATATT
i caePb3.Scfld02_0      C 0 I 544
s caeJap4.Scaffold17934   574079 8 +   591668 aaaaaaca-
i caeJap4.Scaffold17934 C 0 C 0

a score=-10082.000000
s ce10.chrX              5177500 38 + 17718866 CATTTAAAACTTAAAAATAAAATCATGGGT---------ACCGATAT
s cb4.chrX              10513042 41 + 21540570 T-CATAGGATCGACAAAGG-----TTTCCTAAATAATAAATCGaaag
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   1999896 33 -  4500979 TATTTAAGTTCTACAAGGA-----ATGGCT---------ATCGATAT
i caeRem4.Crem_Contig0  C 0 I 854
s caeSp111.Scaffold567     49046 40 +   141584 --TACGGATCACAAAAATA-----ACGATTTACCAGTACATTCAAAG
i caeSp111.Scaffold567  C 0 I 5
s caeJap4.Scaffold17934   574087 34 +   591668 ----caacacaacaaaaca-----aaacaaaaccaggttattt----
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3458243 544 +  4147112 I

a score=-957.000000
s ce10.chrX              5177538 42 + 17718866 AATGGGTGAGCACGAACTTGCAAAAATACTTTGGAGAAATGG
s cb4.chrX              10513087 41 + 21540570 aaaaaataaatattaatTGCAGAAAATGCTTT-GAGAAATGG
i cb4.chrX              I 4 I 54
s caeSp111.Scaffold567     49091 35 +   141584 ATTATGTGGACAATa--taacaaaaatg-----aataaatag
i caeSp111.Scaffold567  I 5 C 0
s caeJap4.Scaffold17934   574121 32 +   591668 --------aatacaaaaacaaaaaaaaactcggaaaagat--
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3458243 544 +  4147112 I
e caeRem4.Crem_Contig0   1999929 854 -  4500979 I

a score=-2338.000000
s ce10.chrX              5177580 55 + 17718866 ATTCACGATTTGGAAGCAACG--GTATGTTGAAAGAACCGTAATAAAT------GACTGGTGA
s caeSp111.Scaffold567     49126 56 +   141584 aataa------aTAAGCAAGGA-GAATACTGAAATAACAACAAAACGTTCATCAGACCGGGAT
i caeSp111.Scaffold567  C 0 I 7
s caeJap4.Scaffold17934   574153 26 +   591668 ---------------------ATGCATACCGAAATAAA----------------TACTGGCGA
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3458243 544 +  4147112 I
e cb4.chrX              10513128 54 + 21540570 I
e caeRem4.Crem_Contig0   1999929 854 -  4500979 I

a score=0.000000
s ce10.chrX              5177635 7 + 17718866 CTGAGTA
e caePb3.Scfld02_0       3458243 544 +  4147112 I
e caeJap4.Scaffold17934   574179 0 +   591668 C
e cb4.chrX              10513128 54 + 21540570 I
e caeSp111.Scaffold567     49182 7 +   141584 I
e caeRem4.Crem_Contig0   1999929 854 -  4500979 I

a score=-23663.000000
s ce10.chrX              5177642 74 + 17718866 TTTTGTGAATAAATTATGTTGAAAGTCT-------------AA------AGATCGGTATGTGAAGCATGAGATGTAGATTCT------TGGGAGACGGA
s cb4.chrX              10513182 77 + 21540570 --CTGTATAGATA---TGTGATGAGTGACGAGG-----TGCAATTTTATAACTCCGTATG-----------ACTTGCCGTCGGAGCTTGTGGTACCGG-
i cb4.chrX              I 54 I 21
s caeRem4.Crem_Contig0   2000783 67 -  4500979 tttCGTGCAGAAATCGTGTGAAGGATCTTGGCG-----TTCAA------AGGTCAGTGCG--------------TGCTGTTG------ATGGTTCAGG-
i caeRem4.Crem_Contig0  I 854 I 18
s caeSp111.Scaffold567     49189 50 +   141584 ------------------------CTCTCCAAG------GCAA--TTACAGTTCATTATGGACAGATCCAGAGTTACTTTCA-----------------
i caeSp111.Scaffold567  I 7 C 0
s caeJap4.Scaffold17934   574179 67 +   591668 ---Gggaaggagagagagagagagaacatggatttatttttaa------agttcggAATGACCAGATTC-----TGGCGTT------------------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3458243 544 +  4147112 I

a score=19576.000000
s ce10.chrX              5177716  96 + 17718866 -----------------AGTTGTTTCCTGTGTGATTGTGGAAGAAGGCGAT------TCTGGCTCGATGGGTTTCAGAAGAAAGATCGCGTCAGGAAGGTAGTAAGCAGAC-----------------------------------------TGAAAT-----AT
s cb4.chrX              10513280  96 + 21540570 -----------------TGACACTTTTGGAGCGGCCTGAGCGGAAGACATT------TTTGGAGCAATGGGTTTCAAAAGGAAAACAGCATCAGGAAGGTAGTAGGCAGAC-----------------------------------------TGAAAT-----AG
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   2000868 127 -  4500979 -----------------------TGTTGGGATTGCATCTGCAG---------------CTGGCGCAATCGGTTTGAGAAGGAAGACTGCATCCGGAAGGTAGTAGGCGGACTATAAATCGCAAAGTTAGGATTTTTAGTCAGTTTCCAGTTATGAAATCAGGAAG
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold567     49239  98 +   141584 ---------------------GTTTCAGTCGCTGTCCGAGGAGAAGCTGATCCATCATCTTTgttcaatgatttcagaaggaACACAGCATCAGGGAGGTAATAGGCAGAC-----------------------------------------TGAAAA-----GT
i caeSp111.Scaffold567  C 0 I 27
s caePb3.Scfld02_0       3458787  96 +  4147112 -----------------AGCGATTTCCTCAGCGGTCAAAGTAGCCGTTGGC------TCCGGGATGATTGGTTTGAGGAGGAAAACGGCATCCGGGAGGTAGTAGGCAGCC-----------------------------------------TGAAAT-----AT
i caePb3.Scfld02_0      I 544 I 257
s caeJap4.Scaffold17934   574246 109 +   591668 TTCGTTTTCGGGCTTTGATCCTCTTCAACAATTTCTACAGGAGCAGTCGAT---------GGATCAATTGGCTCCAGCaaaaaaaCGCCATCAGGGAGGTAGTAGGCGGAC-----------------------------------------TGAAAT-----T-
i caeJap4.Scaffold17934 C 0 C 0

a score=1534.000000
s ce10.chrX              5177812 4 + 17718866 TTTG
s cb4.chrX              10513376 3 + 21540570 -TTG
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2000995 3 -  4500979 -TGG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold567     49364 4 +   141584 TTTG
i caeSp111.Scaffold567  I 27 I 28
s caeJap4.Scaffold17934   574355 4 +   591668 TTAG
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3458883 257 +  4147112 I

a score=-8711.000000
s ce10.chrX              5177816 16 + 17718866 ATGTTTGAAAAAA---------------TTT
s cb4.chrX              10513383 13 + 21540570 ATTGAAAACATAA------------------
i cb4.chrX              I 4 I 387
s caeRem4.Crem_Contig0   2001002 13 -  4500979 TTTTTAAACATGA------------------
i caeRem4.Crem_Contig0  I 4 I 25
s caeSp111.Scaffold567     49396 28 +   141584 agcttcaaaaaaaacattcacTCATTGT---
i caeSp111.Scaffold567  I 28 I 3
s caePb3.Scfld02_0       3459140 19 +  4147112 AAATTTAGCATAA---------CAGTGT---
i caePb3.Scfld02_0      I 257 I 3
s caeJap4.Scaffold17934   574359 16 +   591668 ---TTGGgcatat---------aatttt---
i caeJap4.Scaffold17934 C 0 C 0

a score=102309.000000
s ce10.chrX              5177832 159 + 17718866 TC-------------------------------AAATCAAAC--TTCCACCCACATTGTTCATATCTCCTTCGCAAAGATACGGCAATCTTGTCCATCTGAGCACCTCAAAATTTGCCGGTTTGAAAACATTGACGATCATATGATGAACATGGTCGGCGTAGGTACGACCAGCAACGTTCAGGTAGTTGTC---------------------------------------------------------
s cb4.chrX              10513783 159 + 21540570 TC----------------------AAGTTAAAGAAA-----------AACTAACATTGTTCATGTCTCCCTCGCACAAGTATGGGAGTCTCGTCCATCTGACCACATCGAAGTTGGCAGCTTTGAAGACATTGACTATCATATGATGAACGTGGTCTGCGTAGGTACGTCCTTGCACATTGAGATAGCTGtc---------------------------------------------------------
i cb4.chrX              I 387 I 481
s caeRem4.Crem_Contig0   2001040 185 -  4500979 TCATACCTTACTTTTTGAACATGGAAGACAGGAAAAAT-------TTAACTCACATTGTTCATATCTCCCTCGCAGAGATATGGCAGTCTTGTCCATCTCACAACCTCAAAGTTAGCTGGCTTGAAAACATTGACAATCATGTGATGGACGTGATCGGCATAGGTGCGTCCTTGCACATTGAGGTAGTTGTC---------------------------------------------------------
i caeRem4.Crem_Contig0  I 25 I 45
s caeSp111.Scaffold567     49427 158 +   141584 TC-----------------------------AGAAATCAG-----TGAACTCACATTATTCATATCACCTTCGCAAAGGTATGGAAGCCTTGTCCATTTGACAACTTCGAAGTTGGCTGGCTTGAAAACATTAACAATCATATGATGGACATGGTCGGCATAAGTTCGTCCTTGCACATTCAGAAATTTATC---------------------------------------------------------
i caeSp111.Scaffold567  I 3 I 15
s caePb3.Scfld02_0       3459162 151 +  4147112 TC----------------------------------TC-------TAAACTCACATGGCTCATATCACCTTCGCAGAGATATGGCAATCTTGTCCATCTGATCACTTCAAAGTTGGCTGGCTTGAACACGTTGAAGATCATGTGGTGGACATGTTCGGCATAAGTTCGTCCTTGcacattcaaaaacttatc---------------------------------------------------------
i caePb3.Scfld02_0      I 3 I 10
s caeJap4.Scaffold17934   574375 208 +   591668 -----------------------------------------ttttcaaacttacaTGACTCATATCTCCTTCGCAGAGGTAAGGCAATCTTGTCCAACGAACCACTCTAAAGTTGGCCGGCTTAAAAACGTTGAGAATCATGTGGTGAACGTGGTCAGCAAAAGAGCGTCCTTGCACGTTGAGGTAGTTATCTGGAATAATTGTTTCATAATTGACTAACaatgagccaaaaaaaaataaatacaaacc
i caeJap4.Scaffold17934 C 0 C 0

a score=546.000000
s ce10.chrX              5177991 1 + 17718866 A
s caeSp111.Scaffold567     49600 1 +   141584 A
i caeSp111.Scaffold567  I 15 I 29
s caePb3.Scfld02_0       3459323 1 +  4147112 a
i caePb3.Scfld02_0      I 10 I 37
s caeJap4.Scaffold17934   574583 1 +   591668 A
i caeJap4.Scaffold17934 C 0 C 0
e cb4.chrX              10513942 481 + 21540570 I
e caeRem4.Crem_Contig0   2001225 45 -  4500979 I

a score=111170.000000
s ce10.chrX              5177992 141 + 17718866 GGTCGGGTGCTTCGTCCATTTGGATTGAATTCCACGTAATGGCTGACTGGAAGCACAAGCGACACGATGACATTACAGTTTGAGCGGCGAGCGACGTTCCACAAGTCGTTCAACAGCTTTCCTGGCGAGTAATGGCTGAAA
s cb4.chrX              10514423 141 + 21540570 GGACGAGTACTACTTCCATTTGGATTGAACTCTACATAATGACTAACTGGAAGCACTAGCGACACAATGACGTGGCAGTTGGAGCGGTGAGACACATTCCACAGATCTTGAAGCAACTTGCTTGGAGAGTAGTGCCTGCAA
i cb4.chrX              I 481 C 0
s caeRem4.Crem_Contig0   2001270 141 -  4500979 GGACGTGTGCTCTTTCCGTTTGGGTTGAATTCGACGTAGTGACTGACTGGAAGCACGAGCGATACGATGACATGGCAGTTTGAGCGATGTGAGACGTTCCACAAGTCTTGGAGCAACTTTTTCGGGGAGTAGTGCCTGGAA
i caeRem4.Crem_Contig0  I 45 C 0
s caeSp111.Scaffold567     49630 141 +   141584 GGTCGTGTTCCCGTTCCGTTCGGGTTGAATTCAACATAGTGGCTGACAGGGAGAACCAAGGAAACGATAACAAGACAATTGGAGCGATGCGATACTTTCCAGAGATCTTGGAGCAACGCTCCAGGAGAATAGTGGCTGCAA
i caeSp111.Scaffold567  I 29 C 0
s caePb3.Scfld02_0       3459361 141 +  4147112 GGACGGGTACTTTTTCCATTCGGGTTGAACTCGACGTAGTGATTGACTGGAAGTACAAGTGAGACGACGACATTGCAATTAGAGCGGTGAGCATTAATCCAGAGGTCTTCAAGAAGCTTTCCAGGCGAGTAGTGACTGAAA
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold17934   574584 141 +   591668 GGACGCGTGCTTTTTCCATTGGGGTTGAACTCAACGTAATGACTGACCGGAAGGACTAGAGAGACAATCACGTTGCATTTTGATCGATGAGCCACTTTCCACAAGTCATTTAGCAGTTTTTGAGGAGAGTAGtggctgaaa
i caeJap4.Scaffold17934 C 0 I 2202

a score=-6103.000000
s ce10.chrX              5178133 18 + 17718866 --TTTGCAGCTTTCATTGAA
s cb4.chrX              10514564 18 + 21540570 --Tcgattgtattttttttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001411 20 -  4500979 ATTCACTTGTTTTCAGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     49771  3 +   141584 --TAG---------------
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3459502 18 +  4147112 --AACATGACATTGGGAGGA
i caePb3.Scfld02_0      C 0 I 294
e caeJap4.Scaffold17934   574725 2202 +   591668 I

a score=-5752.000000
s ce10.chrX              5178151 17 + 17718866 TAATCTGAGTTTCTGTT--------
s cb4.chrX              10514582 18 + 21540570 -------tttctcatgTCAACCGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001431 16 -  4500979 -------TTGTTAAGATT--TCGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     49774 17 +   141584 CGATTTGGTTTTCTGTT--------
i caeSp111.Scaffold567  C 0 I 662
s caePb3.Scfld02_0       3459814 17 +  4147112 TAATTTCTGTCTCATCT--------
i caePb3.Scfld02_0      I 294 C 0
e caeJap4.Scaffold17934   574725 2202 +   591668 I

a score=-573.000000
s ce10.chrX              5178168 1 + 17718866 C
s cb4.chrX              10514600 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001447 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50453 1 +   141584 a
i caeSp111.Scaffold567  I 662 C 0
s caePb3.Scfld02_0       3459831 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   574725 2202 +   591668 I

a score=92842.000000
s ce10.chrX              5178169 121 + 17718866 ACTTACCGATCGAGGAGGTTGAAAGCGGTGACCAAATCAAATTTAACATCAGTTTCAGCCCACTCGAGTGCACTGAGAACATTGTATCCCTTCCAGCTGAGCCGGTTTCTCATCTTCTGCA
s cb4.chrX              10514601 119 + 21540570 ACAAACCGATCGAGGAGGTTGAAGGCGGTAATCAAATCGAACTTGACATCAGTGTTTGCCCAATCAAGTGCGTCCAGAACTGTGTACCCTTTTGAAGCGAGACGTTTgcgcattttctg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001448 121 -  4500979 TCCTACCGGTCGAGAAGGTTGAATGCAGTGATCAAATCGAACTTGATATCAGTGTTCGCCCATTCAAGAGCATCGAGAACAATGAATCCTTTCGACGAGAggcgttttctcattttctgta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50454 121 +   141584 acTTACCGATCAAGAAGATTGAAAGCGGtaatcaaattgaattttacaTCAGTATTTGCCCATTCCAATGCATCGAGTACGGTGTATCCCTTCGACACAAGAcggtttctcattttctgcg
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3459832 121 +  4147112 ACATACCGATCGAGTAAGTTGAAAGCAGTGATCAAGTCAAACTTCACGTCGGTTTTTGCCCACTCCAAAGCGTCGAGAACTTTGTATCCTTTTGACGTCAAAcggtttctcattttctgaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17934   576927 118 +   591668 ACCCACCGATCCAGAAGATTGAACGCAGTGATCAAATCAACTTTGATATCAGTGTCGGACCAGTTGACGGCGTCGAGCAGTGTGTATCCCTTCGATTTGAgacgtttttgcattttct---
i caeJap4.Scaffold17934 I 2202 C 0

a score=-4526.000000
s ce10.chrX              5178290 17 + 17718866 AAAAAACTTTGTTTGT--A-
s cb4.chrX              10514720 12 + 21540570 ---aaaaacaatttt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001569 18 -  4500979 gtaaaacgttattttttt--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50575 12 +   141584 ----AAATCGGTTTCT----
i caeSp111.Scaffold567  C 0 C 0
s caeJap4.Scaffold17934   577045 15 +   591668 --aaaattcaatttgt---a
i caeJap4.Scaffold17934 C 0 I 13
e caePb3.Scfld02_0       3459953  0 +  4147112 C

a score=0.000000
s ce10.chrX              5178307 34 + 17718866 GTAATCTTGCAGGAGGAGTAACGTTTCCGTTTTT
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e cb4.chrX              10514732  0 + 21540570 C
e caeSp111.Scaffold567     50587  0 +   141584 C
e caeRem4.Crem_Contig0   2001587  0 -  4500979 C

a score=-310.000000
s ce10.chrX              5178341 15 + 17718866 GCAAAAAAATTTAAA
s cb4.chrX              10514732  6 + 21540570 -----aagatT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001587 15 -  4500979 ctgaaaggaCTCAAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e caeSp111.Scaffold567     50587  0 +   141584 C

a score=-48.000000
s ce10.chrX              5178356 18 + 17718866 TTTCATAGTGGGAATTTC
s cb4.chrX              10514738  5 + 21540570 -------------ATCTC
i cb4.chrX              C 0 I 8
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e caeSp111.Scaffold567     50587  0 +   141584 C
e caeRem4.Crem_Contig0   2001602  0 -  4500979 C

a score=0.000000
s ce10.chrX              5178374 87 + 17718866 AAAACAGCCGGCTTGGCGTTTTTCAAATATTTGGATACATTCGTTGTCCTAGGTAATTCAAACTGGGATAACTGCTTGACATTAAGC
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e cb4.chrX              10514743  8 + 21540570 I
e caeSp111.Scaffold567     50587  0 +   141584 C
e caeRem4.Crem_Contig0   2001602  0 -  4500979 C

a score=-224.000000
s ce10.chrX              5178461 42 + 17718866 CAAAAACGCAGAAAAGAAACGCAGAAAACGTTTTCAAAGCAT
s caeSp111.Scaffold567     50587 25 +   141584 TATACACGTAAACAA------CGGAAAACAT-----------
i caeSp111.Scaffold567  C 0 C 0
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e cb4.chrX              10514743  8 + 21540570 I
e caeRem4.Crem_Contig0   2001602  0 -  4500979 C

a score=0.000000
s ce10.chrX              5178503 26 + 17718866 TATGTCATCATAAAATGTTTTACAGT
e caePb3.Scfld02_0       3459953  0 +  4147112 C
e caeJap4.Scaffold17934   577060 13 +   591668 I
e cb4.chrX              10514743  8 + 21540570 I
e caeSp111.Scaffold567     50612  0 +   141584 C
e caeRem4.Crem_Contig0   2001602  0 -  4500979 C

a score=-1511.000000
s ce10.chrX              5178529 12 + 17718866 ATTCAAAGCCTT
s cb4.chrX              10514751 11 + 21540570 TCTTTGAATAT-
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2001602  4 -  4500979 -----AAAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3459953 12 +  4147112 attcgaaatctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17934   577060 13 +   591668 I
e caeSp111.Scaffold567     50612  0 +   141584 C

a score=67150.000000
s ce10.chrX              5178541 116 + 17718866 TTTTTT--------TAATTTC--AAGTTCTTACCGATGACAACTCTGTAGCATAAACATGCTCAAAGAATGGGCGCATGTGCTCTGTAATGTCTCCGTTGCCAGCTCCAAGATCGAGCACCTGAAA-
s cb4.chrX              10514762 100 + 21540570 --------------------------CGCTGACCGGCGAAAGTTCGGTTGCATAGACGTCGTCGAAACATGGACGCATGTGCTCAGTAATGTCTCCGTTTCCTGCGCCGAGGTCAAGAACCTGAAA-
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   2001606  99 -  4500979 ---------------------------GTTTACCGGTGAGAGTTCGGTTGCATAAATGTCACCGAAGAATGGTCTCATGTGTTCAGTGATGTCTCCATTCCCGGCACCGAGGTCAAGAACctgtaa-
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold567     50612  95 +   141584 -------------------------------ACCGGAGATAGTTCTGTTGCATAGacattgttgaaaaatgagtgcaTATGAGCGGTGATGTCTCCATTACCAGCTCCAAGATCGAGAACCTGTGA-
i caeSp111.Scaffold567  C 0 I 17
s caePb3.Scfld02_0       3459965 124 +  4147112 ATTGCTGACTGGGGTAAGCTT--CTGTGCTTACCGGTGAAAGTTCAGTCGCGTAGACGTTGTCGAAAAAAGAGCGCATGTGCTCAGTGATGTCTCCATTGCCAGCGCCAAGGTCGAGAACCTGGAA-
i caePb3.Scfld02_0      C 0 I 611
s caeJap4.Scaffold17934   577073 119 +   591668 --------tttttttaatttttattttccatacCAATGAAAGTTCGGTAGCGTAAACGTCTTGAAAGAATGGACGCATGTGCTCTGTGATGTCACCATTTCCGGCGCCGAGATCGAGAACctacaaa
i caeJap4.Scaffold17934 I 13 C 0

a score=-7189.000000
s ce10.chrX              5178657 38 + 17718866 ------------TATATAATTGCGGGTTGGTGAAACAATTTCCCATAAAT
s cb4.chrX              10514871 28 + 21540570 ------------ATTATGAACGTTGAATGcttcaaaactc----------
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2001721 28 -  4500979 ------------GTTATCAGCTTTAAATTTTAGAATAATT----------
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold567     50724 22 +   141584 ------------TGCATAATCATCGAA------AGAACTT----------
i caeSp111.Scaffold567  I 17 C 0
s caeJap4.Scaffold17934   577192 39 +   591668 tatttttttccagcgAAAACTGTGGAAAGTGGAAAGGAT-----------
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3460089 611 +  4147112 I

a score=192149.000000
s ce10.chrX              5178695 412 + 17718866  
s cb4.chrX              10514899 459 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2001749 453 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     50746 450 +   141584  
i caeSp111.Scaffold567  C 0 C 0
s caePb3.Scfld02_0       3460700 459 +  4147112  
i caePb3.Scfld02_0      I 611 I 3929
s caeJap4.Scaffold17934   577231 495 +   591668  
i caeJap4.Scaffold17934 C 0 C 0

a score=-7184.000000
s ce10.chrX              5179107 38 + 17718866 TAAGAGGAAGAG-------AGGTGGTGTGTGGCGAAG-------ACGGTTTG
s cb4.chrX              10515358 44 + 21540570 c---gaGAGGGA-----ACAGTAAGGACGGCGCGCAGTGAACTGACTGTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2002202 47 -  4500979 taaGGAGAGGGG--TGCGCAATACGACCTTTGCAAGGGGCA---ACTGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold567     51196 34 +   141584 ---GGAGAAAAG-----ACAG----------GCAAAGGGTTGAGACGGTCCG
i caeSp111.Scaffold567  C 0 N 0
s caeJap4.Scaffold17934   577726 45 +   591668 CGAGGCGAGCGGTGTGCACGAATGCAAGAATGCAAAA-------ATGGTACC
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3461159 3929 +  4147112 I

a score=3592.000000
s ce10.chrX              5179145 48 + 17718866 AATGGGGGAACGCTT----TGCACTGTTGGCCCGG--TGT-GTGCAAACGCGCTC
s cb4.chrX              10515402 52 + 21540570 TGCGAGG---TCCCTCGTGTGCGTTGTTTTTGTGGTCAACAATGCAAGCGCGCCC
i cb4.chrX              C 0 I 5545
s caeRem4.Crem_Contig0   2002249 50 -  4500979 AATAAGG---CGCTCAGCGTGCACTGTTGTCCGAG--Agtaatgcaaacgcgctc
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   577771 49 +   591668 ---GAGG---AGAGGATTGTGCACTGTTGGCGAGAGATATgttgcaagtgcgctc
i caeJap4.Scaffold17934 C 0 C 0
e caePb3.Scfld02_0       3461159 3929 +  4147112 I

a score=6.000000
s ce10.chrX              5179193 11 + 17718866 GATT----CACAATA
s caeRem4.Crem_Contig0   2002299 15 -  4500979 tattggcACACaacg
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17934   577820 11 +   591668 tact----gaAAACA
i caeJap4.Scaffold17934 C 0 N 0
e caePb3.Scfld02_0       3461159 3929 +  4147112 I
e cb4.chrX              10515454 5545 + 21540570 I

a score=684.000000
s ce10.chrX             5179204 10 + 17718866 AGGAAAAAGA
s caeRem4.Crem_Contig0  2002314 10 -  4500979 agaaaagaga
i caeRem4.Crem_Contig0 C 0 I 1666
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e cb4.chrX             10515454 5545 + 21540570 I

a score=0.000000
s ce10.chrX             5179214 938 + 17718866  
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e cb4.chrX             10515454 5545 + 21540570 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=1464.000000
s ce10.chrX             5180152 260 + 17718866 TTCCCGAATTGGTTATGTCTGTTCACAATGACAGTAGATACCTGAACTACGAATTCAAAATGAATAC----AGTGTCTTGGTGTGT-------TCTAGGC----CTGTCAGCATGCGTATTTC-TCGGACTTATCTGTTTTATCAGAATGGCAATAATTTATTGTTCCCAACCTTCCATGGCTACCAAAGCTATCCATCCGCACGTATTTAAATCTATGGTTATTATG----CAGTTGTCGGTAAGCTGGTTATATTTTTTCTTTGTTATCTGTTTTTTT
s caeSp111.Scaffold629  7742575 244 - 33334924 TTATCAAAATGTTCATGTCTATTCATGGAAATGATAGCTACGTGAACTATAAGTATGAATTTAATTCTCAAACTCCCTTCGTGTGTCTACTGATCTGTGTTACTCTGTCAACA-GCATGTTTAGTTGGA---------------AGAATGGCCAAAATTTACTGTTCTAAGCCAATGAATGGAACAAAA------------CAAGTGTTCAAAGCGTTTTTCATGATGGCCACAGCGGTAAGTTaaaaaaaCATCCTTTTCCTTCAAG--------TTCA
i caeSp111.Scaffold629 N 0 C 0
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e cb4.chrX             10515454 5545 + 21540570 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=8523.000000
s ce10.chrX             5180412 205 + 17718866 TTTCAGCATTATATTTTCTTCATAACTGATAATTTGGCATTCCGCGTGCCTTCTACCGGATTTGTTACAGCTAGCTGTGCTGCCATGGAGCC-TAATCACTACTTAAAAATTATTTACCTGTCACAAATGTGGGGAACCTATTGGTCAATGTTTTCCTCACTATTGTTTTCTATCATTCGAATGATTGTCTATGTAACTCCAACCA----
s cb4.chrX             10520999 205 + 21540570 TTGTAGAACTTGACTTTCTTTGTATTCGATTTGCTCACATTCCGTCTCCCATCAACTGGAGTCTTGACTAGCTTGTGTGCAAGATTCGAGCCTAACCGATTACTTATCATTG-TATACATTGGCCAACTGGTCTCCACTTATTGGTCCATGCTTTTCACTCTCCAGTTTTGCCTGGTTCGTCTCATCATCTTTG----CCCGTCCTACCG
i cb4.chrX             I 5545 C 0
s caeSp111.Scaffold629  7742819 201 - 33334924 TTATAgaatttcctcttctcttttttcgataaccTAACTTTTCGAATTCCTTCCACCGGAATTCTAACTTCGTGGTGTGCATCTATTGAACC-AAATGTTTACCTTGCTTGGATTTACATATTCCAACTGTTCTCTGCTTATTGGTCTCTACTCTTTGCGTTGCTCTTCTCTATTGTCCGTGTTATCATATACG----CCCAACCA----
i caeSp111.Scaffold629 C 0 I 37
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=365.000000
s ce10.chrX             5180617 18 + 17718866 GACATGCAGAGGTAACAA
s cb4.chrX             10521204 18 + 21540570 ATCATGAGCAGGttagaa
i cb4.chrX             C 0 I 73
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e caeSp111.Scaffold629  7743020 37 - 33334924 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=0.000000
s ce10.chrX             5180635 184 + 17718866 TTATCTAATTAGCCACACTGGCTCGTTTTGTAGAATTGCCGCGCACCCATGCTTGCACTCCCTTTCGCTCAAAAGCAACCATGATATGAGCCTTTGAAGTAGAGGGATACATGCGCAAATCTAATAGTGAAAATACCGTCAACATTATTAATAACGCCTTATTTTCAGTGGTCGTCTTACGTTT
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e cb4.chrX             10521222  73 + 21540570 I
e caeSp111.Scaffold629  7743020  37 - 33334924 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=714.000000
s ce10.chrX             5180819 10 + 17718866 TTTACACATT
s caeSp111.Scaffold629  7743057 10 - 33334924 TTTACACaat
i caeSp111.Scaffold629 I 37 C 0
e caePb3.Scfld02_0      3461159 3929 +  4147112 I
e cb4.chrX             10521222 73 + 21540570 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=-112.000000
s ce10.chrX             5180829 8 + 17718866 CATTCCGT
s caeSp111.Scaffold629  7743067 5 - 33334924 -attct--
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      3465088 8 +  4147112 CACTCCTC
i caePb3.Scfld02_0     I 3929 C 0
e cb4.chrX             10521222 73 + 21540570 I
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=1164.000000
s ce10.chrX             5180837 30 + 17718866 TGGCTTTCTTCTCACCATTTGGAATTACGT
s cb4.chrX             10521295 30 + 21540570 TAGCCTTTGTCTCGCCTTTTGCTGCTCCAT
i cb4.chrX             I 73 C 0
s caeSp111.Scaffold629  7743072 27 - 33334924 ---caattttattcCCAGCATtcactgttt
i caeSp111.Scaffold629 C 0 C 0
s caePb3.Scfld02_0      3465096 30 +  4147112 TTGCGATTGTTCTTCCTTTTGCCGCTCCTT
i caePb3.Scfld02_0     C 0 C 0
e caeRem4.Crem_Contig0  2002324 1666 -  4500979 I

a score=24474.000000
s ce10.chrX             5180867 106 + 17718866 ACTTTATGTATCCAGCAAAAGGCTATTGTAGACAATGGGGATCTCCTTTGGGCTTCGGGTCTGTCTTCATCTCCTACACCGAAACCTATGATGAAATACGACACGA
s cb4.chrX             10521325 106 + 21540570 ACTTTATGTATCAAGGACTCGGATATTGCCGTCAATGGGATACAGTATTCCGTCATGGTGCCGTTTTCATTTCCTACACGGATACCTTGCTTGGAATTCGAAAGGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2003990 100 -  4500979 CTTTTATGTTCGGTGGAATTGGATATTGCCGCCAATGGGACCATCCATTCAGTTTTGGTGCTGTTTATATCTCCTACGCCGAAACC------GACCAACGACATGA
i caeRem4.Crem_Contig0 I 1666 C 0
s caeSp111.Scaffold629  7743099 106 - 33334924 tcttcttatatACAGCAAAAGGGTATTGCCGTCAATGGAAATGGCCATACTCATTTGGAGCAGTTTTTATATCATACACCGACACAATTGGTGACattcgaaatga
i caeSp111.Scaffold629 C 0 I 2593
s caePb3.Scfld02_0      3465126 106 +  4147112 GGTTCATGTATCCTGGTGTTGGATACTGCCGACAATGGAACCCACCGATGCCGTTTGGTGCGatattcatctctttttcaaacACACTGTTTGAAATCCGCCTGGA
i caePb3.Scfld02_0     C 0 C 0

a score=600.000000
s ce10.chrX             5180973 1 + 17718866 C
s cb4.chrX             10521431 1 + 21540570 C
i cb4.chrX             C 0 I 5717
s caeRem4.Crem_Contig0  2004090 1 -  4500979 C
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      3465232 1 +  4147112 C
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold629  7743205 2593 - 33334924 I

a score=-4374.000000
s ce10.chrX             5180974 377 + 17718866 ATATTCTTCATCCCGTTGACTTTAGCTGTCCCTC----------TCCTT----ATTATCATCAACAATTTTGCTCTTATAGTTATGGCAGTTGGCTA--CTCAAAAACATTAAAGTAAT-------TGtatta--attttcaaacaaaattctattaaattcattaatttattaatttaaGGCGCGGTCAAAGTTT-----GTTCAAGCAATCATCTCAATTATCCCTTATCTTGACTAGCATAGCAATGACCGTACCATACATCACAAGTGGAATATTGACGGT------ATCA-----TTTTTTAA----ATTTTGAATTTTTGTTATATAGTATTGAATTCAGGCAGTCGTAATTTCATACCCGGACGTCAACGCCTACGTTCTCTTCATTCGAAGCCCGATTACCGACATTGCTCAAT
s caeRem4.Crem_Contig0  2004091 367 -  4500979 CCTTTCTTTGTTCCTGTCACTATAACACTATCAT----------TGTTT----ATTGTACTCGTAAACATTGGAGTTATA--TgtcagaataaaaaaatggCTAAAACTACAAAGTGAGTTGACATTTTACGAgtattttgaatcaaaatctCA----------TTGTTTTTTAGTGCCGGGCG------AAGAGT-----ATACACTGACTCCGCTGGAAAATCTCTGTATTACACCACATTGGCCATGATAATACCATATTTGTTTCACGGATGTTTGACGGT-----AATCACAAGCTCACTTAAGTTATTCTTAAAGATATATT-TACAG-GTTGTCTCTGTGTACT-----------ATCCAGCAACTTCCGCGTATGTCATTCTCATTCGCTCGGCAGTTACAGACGTTTTTCAAT
i caeRem4.Crem_Contig0 C 0 I 2306
s caePb3.Scfld02_0      3465233 367 +  4147112 --------------TACTTCTACAATCTGATGATAGGCTTCGGATGTTTTGCCATCATATTGTCCAATATCTGGTTGATAATTTTTGCAACAAAGCA--GGCGAAGGTTTCAAGGTACTTCGAA--Ttaacaa--attttgaagcaaaa---ca----------AAATATCCTATTTCAGAGCA------ATCAGTGCCGCGTTTACTCGTTCAACAAAACTGTCCCTCTATTCAACGACACTTTGCATGACCATTCCATTTGCGGCCCATGGAATAATGACTGTATGTAAATTAGAAATTTGCTTAA--------TGAATATCATTT-TATG-------CTTTAGATACTCGCACATTTGAAGCCAAGTTTGTCAGGTTATGTCATTTATGTTCGAAGTCCACTCACCGATATTGGTCAAA
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             10521432 5717 + 21540570 I
e caeSp111.Scaffold629  7743205 2593 - 33334924 I

a score=410.000000
s ce10.chrX             5181351 53 + 17718866 CATCAATCCCAATAATCTTCTACTTGACTCACCCACTGTTCCGTAAAAAGATA
s caePb3.Scfld02_0      3465600 50 +  4147112 CGGCACTTCTCGGCATCTACAACATCAGT---GCGATGCTTCGCaaaaaaaCA
i caePb3.Scfld02_0     C 0 I 5176
e cb4.chrX             10521432 5717 + 21540570 I
e caeSp111.Scaffold629  7743205 2593 - 33334924 I
e caeRem4.Crem_Contig0  2004458 2306 -  4500979 I

a score=0.000000
s ce10.chrX             5181404 1163 + 17718866  
e caePb3.Scfld02_0      3465650 5176 +  4147112 I
e cb4.chrX             10521432 5717 + 21540570 I
e caeSp111.Scaffold629  7743205 2593 - 33334924 I
e caeRem4.Crem_Contig0  2004458 2306 -  4500979 I

a score=540.000000
s ce10.chrX              5182567 129 + 17718866 ATTTCGAATGTTATAATTTGCAT-AAATATTATACTATTTGAATAAAACCAGAATATGTATTTTTAATATTACCAAT-------ATAAATGAAA---------GTTCAAGTCTTCAATTGTGTGCACCC-GATACTA---GGGGTACCTA
s caeJap4.Scaffold18194   323442 138 +   823664 attttaaaagttattTCCTGTATGAAATTGTGcgtttttttaagaaaatcaaaaaa---------aaaactacgagtGCAGGAAATAAGCGAACTTAAAATGTGCTCCACTCGTCACTT---CGCACTTTGATATCAATTGGTGCAGCTA
i caeJap4.Scaffold18194 N 0 C 0
e caePb3.Scfld02_0       3465650 5176 +  4147112 I
e cb4.chrX              10521432 5717 + 21540570 I
e caeSp111.Scaffold629   7743205 2593 - 33334924 I
e caeRem4.Crem_Contig0   2004458 2306 -  4500979 I

a score=-189.000000
s ce10.chrX              5182696 5 + 17718866 TCTTT-
s caeSp111.Scaffold629   7745798 5 - 33334924 TCCTG-
i caeSp111.Scaffold629  I 2593 C 0
s caePb3.Scfld02_0       3470826 5 +  4147112 TCCTG-
i caePb3.Scfld02_0      I 5176 C 0
s caeJap4.Scaffold18194   323580 5 +   823664 -TCTGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10521432 5717 + 21540570 I
e caeRem4.Crem_Contig0   2004458 2306 -  4500979 I

a score=10418.000000
s ce10.chrX              5182701 20 + 17718866 TCTCAGGT----------TTCCACATTGTG
s caeRem4.Crem_Contig0   2006764 27 -  4500979 TCTCAGGTGGC---TCGACTTTGAATTGTG
i caeRem4.Crem_Contig0  I 2306 C 0
s caeSp111.Scaffold629   7745803 27 - 33334924 TCTCAGGTGGC---TCGACTTTGCATCGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3470831 27 +  4147112 TCTCAGGTGGC---TCGACTTCGAATTGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   323585 29 +   823664 -CCCAGGTGGAGGGCCGACTTCACGTCGCG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10521432 5717 + 21540570 I

a score=385386.000000
s ce10.chrX              5182721 1159 + 17718866  
s cb4.chrX              10527149 1227 + 21540570  
i cb4.chrX              I 5717 I 674
s caeRem4.Crem_Contig0   2006791 1158 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   7745830 1166 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3470858 1123 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   323614 1058 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-32574.000000
s ce10.chrX              5183880 129 + 17718866 AACTTTTCCTACTTCCTG--------------GTAAAATAGTACAAACTTTTGTGGTGAATGTGGG-TAGGAGTCCCGTTTTTTTTATTAATCT------------------------------------CTGA-------------------------TTCTTAATTT----TTTAAACACATATTG------TCCTGGAA-----------------AAGTTTAAAATAT
s caeRem4.Crem_Contig0   2007951 125 -  4500979 AGCGTTTTTTACTTCCTGAATATTGTC-----GTCAAG------------AAGTGATAAGAAAACg-gaaca-------------ttttaaatt------------------------------------ttgaaaattagtgtTCACACGTT------TTTCAACTCT----TTCGGACACAATTCG------T------------------------Gaatctatcattt
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold629   7746996 196 - 33334924 aactttttttatttcctgaATAT---------GTGAAGTGTT-----CTTGTGTGATAAGAGAACA-GAACAAATggcattttctttttacaaT------------GATGACCTGCCAT--GATTTCTTGCAGAGAATTCAGACACCTataactaaaaattaaacttttttagtttgatCAAAGTTAG------TGCTCATCATCAGATAACGCAGTG-GAGTTGGCCATAT
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0       3471981 223 +  4147112 actttttttcacttcctgaatatttttgagaggCAAAGTGTT-----C--AGGTGATAAGAGAACAtgagttgaacattttttgctgtCAAAATTCGAGCATTGAGGAGGCCGtgtctttgaatttttatttgaagattTATATACAAGCATTTTGACATGACAACTCTGT--TCTGATAATAATAaagcaactttttcaaaaacgaaaaaatctgTGAGAGTTCAAAATAT
i caePb3.Scfld02_0      C 0 I 124
s caeJap4.Scaffold18194   324672 103 +   823664 ---------------------------------------------aacttttgttttaaaaa------------------ttttatgctgaact------------------------------------ttaaaaaaaataatttcaacatttta---tcctacattt----taaaaataaaatatggtAC--TTTTGA-------------------AAGTTAATAAT--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10528376 674 + 21540570 I

a score=-12287.000000
s ce10.chrX              5184009 38 + 17718866 TTTTAGTGAAAATATA--GTAAAAAGA----------AAATA--------------------------GTTCAAAA-
s caeRem4.Crem_Contig0   2008076 61 -  4500979 ttctcatgCAAATTAA--TATGATAGt----------aaacgttttttcaaaataggggttgtat---tttctgta-
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   7747195 70 - 33334924 GTTACATTAATAAAAAACCCTAATAGATAGCATCAAGAAATAGTTCTTT------GCGACTCCACATATTTCCAGA-
i caeSp111.Scaffold629  I 3 I 35
s caePb3.Scfld02_0       3472328 47 +  4147112 TTTTAATTCGGacaaagttaaaaatga----------aaatgttactat-------------------tttccaaa-
i caePb3.Scfld02_0      I 124 I 12
s caeJap4.Scaffold18194   324775 38 +   823664 CTTGAATCATCAGAAA----------A----------CAATGTAAATCT-------------------TGTTTGaac
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10528376 674 + 21540570 I

a score=35989.000000
s ce10.chrX              5184047 256 + 17718866 ATTTTC-----TTCCTCCTTTT-----------------------------------CTCACGCGATTTTTTT-CAC-----ATTTCT--GCCCGAAACTGTGAGCTGATCTCAAGTTTCCGAAGG--------------------CTCATGC-------GAAGAAAAACGCGT--TT--CTTTCTTTTCTTTGATA-------GA---TGACGACTTTTTGTTATATTT---TTTT----ATTCCAGAG-TAGATATTGGAC-----------CAGCCAGAACCTCTACGTCATTCCATCCAACCAGCCCAGACGAGT------CAAATCTATGGCGCTGTGATGAAATTTGATGGAAATTAGCTGTTG
s cb4.chrX              10529050 265 + 21540570 actctt-----tttctcattca-----------------------------------ctttctcgttttttttccacaaataattttttgt---gaaactgTGAATTGGTTTCAAGTTTCATCATC-------------TTCTTTCTTCCCGT-------GGCAAATAGatcttgctc--tttttctctacCTCACCTGATGAAGA---CGAC----TTTTGTTCtgtaa---aacttaaaatttcagat-t--ctattttat-----------caactat-------tgctgattttttttccttcgcCCAGAC---T------CAGACCTATGGCTGTGtgatgaaatttgatggaaattAGCTGTTG
i cb4.chrX              I 674 C 0
s caeRem4.Crem_Contig0   2008140 272 -  4500979 tctTCT-----TCACTGATCta------------------------------------tctctcgttttctt--cacaagtgattttt--t---gaaactgtgaattGGTCTCAAATTTCGCCATCACAGGA------TTCTCCTCCTGTTGT-------GACAAAAagtccct--ct--tttttctctaatgcAT--------GA---CGac----ttttgttctattt---ttct--gaatttcagat-c--atcATTCATAGGACACCTCAAAACTACA----CAATCTGTTACCACTTCCTCCGCTCAGTCAAGT------CAGATCTATGGCGGTGTGAtgaaatttgatggaaattaGTTGTTG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   7747300 282 - 33334924 AATCTTACTTATCATTCGATCATATCTAACTTACTGTAGAATTTCACTTAAATCTATCTTCTCTTACTTTTt--cacaaataattttt--g---aaaaccgtGAATTTGTCTCAAGTTTCGTCATC---------------CCAATGACCCCTCAGACGaaacaaaaactcttt--tc--ttttcctttccatGATC-------Aa---cttc----cttcatttttctt-----------gtttcaga--------attgat-----------TCAATC--------AGATAG----TGAATTTCCGCCCATTCGAGT------GAAATCTATGGCGGTGTTATGAAATTTGATGGAAATTAGCTGTTG
i caeSp111.Scaffold629  I 35 C 0
s caePb3.Scfld02_0       3472387 256 +  4147112 AATCTC-----TCACCTGACCG-------------------------------CCTTCTCCCccgttttttt--cacaaataattttt--g----aaactgtgaattgtTCTCAAGTTTCGTCATG---------------CTTCTGTCCCAT-------AACAAAAGCTTCTa--ccctcttttctttctttgatt-------cA---TGAC----TTTCGTTctattttcaatcc----atttcAGAT-A--ACCATCGGA-----------CCACTA--------AAATCAATCTCAAACCCCCGTCCAGTCTAGT------GAGATCTATGGCGGTGTGATGATCTTTGATGGAAATTAGCTGTTG
i caePb3.Scfld02_0      I 12 I 162
s caeJap4.Scaffold18194   324813 285 +   823664 -ctttt-----tttcttgcttt------------------------cctTATTTTTCCTCGCCTCTCTTGCT--CCAAAATAATCTCG--G--TGAAACTGTGAATTGGTTTCAAGTTTCGTCATAGCCGAATAACTCTGTGTGTGTGTCTGT-------TACAAAGAGTCA----TC--TTTTACGCTTTGTGAAG-------AATTGCGAC----TTTTGTTCTTTATCTTTTTT----ATTCCAGGTGT--ATCAGAGGG-----------CAATTC--------ATCCCATTGAGACCGCACCGCAGAGTTCAATTGTTCACAAATCTATGGAGGTGTGATGAAATTTGATGGAAATTAGCTGTTG
i caeJap4.Scaffold18194 C 0 C 0

a score=15817.000000
s ce10.chrX              5184303 18 + 17718866 CCTCTGTCTTGAAGGTGA
s cb4.chrX              10529315 18 + 21540570 CCTTTGTCTTGAAGGTAA
i cb4.chrX              C 0 I 99
s caeRem4.Crem_Contig0   2008412 18 -  4500979 CCTTTGTCTTGAAGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7747582 18 - 33334924 CCTTTGTCTTGAAGGTAA
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   325098 18 +   823664 CCTTTGTCTTGAAGGTGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I

a score=600.000000
s ce10.chrX              5184321 1 + 17718866 G
s caeRem4.Crem_Contig0   2008430 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold629   7747600 1 - 33334924 G
i caeSp111.Scaffold629  C 0 I 32
s caeJap4.Scaffold18194   325116 1 +   823664 G
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529333 99 + 21540570 I

a score=-3585.000000
s ce10.chrX              5184322 302 + 17718866 -------------CACAAATG---------------------TTTTGGAGTGTACTTGTTAGCTAAAAAAACACCGTCAATGCGAAAAAAATTCCAAAAAGTACGAGAAAGTTTGAT---TCAAATCCGTGGAGAAACCAAGATA-TAGACGGGGCCTAT---AATTGATTTT---------AATTATCG----------------GACTAAACAGTGAATACAGTTC----------------------------TGAGTATTTTTGAAACA-------------------------------TGTGAATAGCTGTAATA---------AAGGGTAAAAAAAATACCCCGTCACAAAAAAAACAATGATAAGAGTTACTCTTGTATGTAGTATTGCTTGTTTTTTACCttaaa------aaaagttaaacttatataattt
s caeJap4.Scaffold18194   325117 413 +   823664 GGTTTGGTTTGGGCAAGAATGGGGTGAATATCAAGTGTTTCATTTTCgtcttaattttctggaaattaaGAAACAG-------GAACACAATTTTAATAAG-------ACTTTTGACGCATCATCTTCTTGGCGATGTTTCGATAGTAGGTTGCATTTGTTTTGGTTCGTTTTTAGGATCAAAATTACCGCTTTCCACCTCAGTTtgaaggaaaaattaaaacagtTTACAAGGGTcacacgcaaaaaaaaaacaaccagtattttcaaaatgacagAAATCAGATAATGCTCCATTAAAGTTCCGTTCAAAATTGTAACATCATCTTCTAAAAAGACAGACAATACCTCGGAATTAAAaaactcacaagggaagt--------------gt-ttgattcctcctaatctagaatttcccaaaatttcagcataggtgcttt
i caeJap4.Scaffold18194 C 0 I 131
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529333  99 + 21540570 I
e caeSp111.Scaffold629   7747601  32 - 33334924 I
e caeRem4.Crem_Contig0   2008431  36 -  4500979 I

a score=0.000000
s ce10.chrX              5184624 118 + 17718866 ttttattaaCATGACTTAGATGTAAAACTTTAAAAAAATCAGTAGAACATTATTCGAAGACGATTTTTTGAGCATAAAAAGTTGCGCATTGGATTATTTAATCTACGACGATTATTTG
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   325530 131 +   823664 I
e cb4.chrX              10529333  99 + 21540570 I
e caeSp111.Scaffold629   7747601  32 - 33334924 I
e caeRem4.Crem_Contig0   2008431  36 -  4500979 I

a score=-1725.000000
s ce10.chrX              5184742 181 + 17718866 GCTGAAACC----------TGGTTTA-----TTGATTAAAAGTTACAAGCAAA---CATAAATTTACTCA-------AATTATCAAGTTTTTA----------------------------AACAT-TATGATGATACATCTAGAAAATTATACCGTCCCCGCGGATT--------TCAAACACTTTGAGCTCATCCAACATTGTAAGA----AAA------------ACAAATT-----AAAGTGTTTCCAAAAAGTTATCCA----
s caeJap4.Scaffold18194   325661 242 +   823664 gcagaaaacatcggttggttggttcagtggttcggttgcagggttcaagggaagctcataacttggctcacgtgagcatttagccggtttttattgcagaaatggaatcagcgtagtcgaaagcacctatgctgaaat-tttgggaaattcta-----------gattaggaggaatcaaacacttc------------ccttgtcagatCTTAAATTTTGGTCCACCACGGACTTCTGAAAACTGTT--CAAAACTTAATTGAGATT
i caeJap4.Scaffold18194 I 131 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529333  99 + 21540570 I
e caeSp111.Scaffold629   7747601  32 - 33334924 I
e caeRem4.Crem_Contig0   2008431  36 -  4500979 I

a score=273.000000
s ce10.chrX              5184923 1 + 17718866 T
s cb4.chrX              10529432 1 + 21540570 t
i cb4.chrX              I 99 C 0
s caeJap4.Scaffold18194   325903 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeSp111.Scaffold629   7747601 32 - 33334924 I
e caeRem4.Crem_Contig0   2008431 36 -  4500979 I

a score=70269.000000
s ce10.chrX              5184924 97 + 17718866 TTCAGGAACTCGGATAATTCTCGAGGATGAAATTGGGGGTGAGGACGACGGAAGCTCTTACAAGTGTTGTAGAGGAGATGTGCACGTTAAAG--TAAGT
s cb4.chrX              10529433 97 + 21540570 ttcagGAACTCGAATCATTATCGAAGATGAAATTGGCGGTGAGGACGAGGGAAGCTCGTACAAGTGCTGTCGAGGTGATGTTCATGTTAAGG--TAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2008467 99 -  4500979 TTCAGGAACTCGAATCATTCTCGAGGATGAAATTGGGGGCGAAGACGAGGGAAGCTCGTACAAATGTTGTAGAGGAGATGTTCACGTTAAGGTATAATT
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold629   7747633 97 - 33334924 TTCAGGAACTCGAATCATTCTCGAGGATGAAATTGGTGGTGAGGACGAAGGAAGCTCTTACAAATGTTGTAGAGGAGATGTGCACGTTAAGG--tgaat
i caeSp111.Scaffold629  I 32 C 0
s caeJap4.Scaffold18194   325904 97 +   823664 TTAAGGAACTCGGATCATTCTCGAGGATGAATTGTCCGGTGAGGACGAGGGAAGCTCGTACAAATGTTGCAGAGGAGATGTACACGTTAAGG--TAAAT
i caeJap4.Scaffold18194 C 0 I 1397
e caePb3.Scfld02_0       3472643 162 +  4147112 I

a score=-5283.000000
s ce10.chrX              5185021 37 + 17718866 ATGTTG-TTCAAAGAAT-ACTTGTGTTAACTGAAATATT
s cb4.chrX              10529530 39 + 21540570 CTGAGCAATTGAAGAACGATACATATTCAAAAGGAATCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2008566 37 -  4500979 TCGAAGATTTATAGTATcagatgaactgaaaa--aatat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7747730 34 - 33334924 at-----tttaaattaGGTCACtcataaaaaagaatggt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   326001 1397 +   823664 I

a score=169072.000000
s ce10.chrX              5185058 519 + 17718866  
s cb4.chrX              10529569 391 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2008603 421 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7747764 380 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   327398 393 +   823664  
i caeJap4.Scaffold18194 I 1397 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I

a score=242.000000
s ce10.chrX              5185577 15 + 17718866 TGATTTCAGAATTTT
s caeRem4.Crem_Contig0   2009024 14 -  4500979 -catttaaaaaatat
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   7748144 15 - 33334924 TGAGCTGATAATTTT
i caeSp111.Scaffold629  C 0 I 23
s caeJap4.Scaffold18194   327791 13 +   823664 --actttttgatttg
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529960  0 + 21540570 C

a score=273.000000
s ce10.chrX              5185592 1 + 17718866 T
s caeRem4.Crem_Contig0   2009039 1 -  4500979 t
i caeRem4.Crem_Contig0  I 1 I 25
s caeJap4.Scaffold18194   327804 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529960 0 + 21540570 C
e caeSp111.Scaffold629   7748159 23 - 33334924 I

a score=401.000000
s ce10.chrX              5185593 8 + 17718866 TTTGGAAA
s caeJap4.Scaffold18194   327805 8 +   823664 tttgataa
i caeJap4.Scaffold18194 C 0 I 21
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e cb4.chrX              10529960 0 + 21540570 C
e caeSp111.Scaffold629   7748159 23 - 33334924 I
e caeRem4.Crem_Contig0   2009040 25 -  4500979 I

a score=0.000000
s ce10.chrX              5185601 802 + 17718866  
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   327813  21 +   823664 I
e cb4.chrX              10529960   0 + 21540570 C
e caeSp111.Scaffold629   7748159  23 - 33334924 I
e caeRem4.Crem_Contig0   2009040  25 -  4500979 I

a score=282.000000
s ce10.chrX              5186403 37 + 17718866 AATCTCTTTG-CCACATATTCCCGCAATCTCATTTACA
s cb4.chrX              10529960 34 + 21540570 aGCCTTTTTGATCAagttttttcacaat----tttcga
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   327813 21 +   823664 I
e caeSp111.Scaffold629   7748159 23 - 33334924 I
e caeRem4.Crem_Contig0   2009040 25 -  4500979 I

a score=103788.000000
s ce10.chrX              5186440 153 + 17718866 TTTCAGATCAAATGTTAATGGTGATATCAATATATTTGGGAATCGTAATTTGTATAGGCGCCATATGGGCTGCCACCAAATGCTATCACTACCTTCGGCAAAAAGCCGAAGGTATCTATCCGGACAGTGGTGAAAGATGTATGTGGGAGTGAA
s cb4.chrX              10529994 153 + 21540570 tttcagatCAAATGCTCATGGTGATATCAATATATTTGGGAATCGTTATTTGTATAGGTGCAATATGGGCAGCTACAAAATGCTATCATTATCTCCGGCAGAAGGCTGAAGGAATCTATCCAGATTCTGGGGAACgatgtatgtgggagtgat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009065 153 -  4500979 TTACAGATCAAATGTTGATGGTGATATCCATATATCTGGGAATTGTAATTTGCATTGGTGCAATATGGGCTGCTACAAAATGCTATCATTATCTTCGACAAAAAGCTGAAGGGATTTATCCGGATTCTGGAGAAAGATGTATGTGGGAGTGAC
i caeRem4.Crem_Contig0  I 25 C 0
s caeSp111.Scaffold629   7748182 153 - 33334924 tttcagatcaaatGCTCATGGTGATATCAATTTATTTGGGAATAATTGTCTGCATAGGTGCGATATGGGCTGCTACTAAATGTTATCATTACCTTCGACAAAAAGCCGAAGGTCTTTATCCATCAACAGGAGAACGATGCATGTGGGAGTGAT
i caeSp111.Scaffold629  I 23 C 0
s caeJap4.Scaffold18194   327834 153 +   823664 tttaagatcaAATGCTAATGGTAATATCAATATATTTGGGAATTATAATATGCATAGGTGCAATATGGGCTGCCACAAAGTGCTATCATTACCTACGTCAGAAAGCCGAAGGTATCTATCCAGATACTGGAGAGAGGTGTATGTGGGAGTAAA
i caeJap4.Scaffold18194 I 21 I 1108
e caePb3.Scfld02_0       3472643 162 +  4147112 I

a score=-13948.000000
s ce10.chrX              5186593 190 + 17718866 CA---------------CCAACCTC---GTCATGATGATACTCGTCTTGTTTTT-TGGA--CCAATGaaatattttattattttttttCCAA-----CTTTTATGT---TTGTTGTAGCATAAAATATTCG-TACGAGAATATATATTATGCATACAGTCCTGGGAAAAAAATTGCGTTCAACCAAGCACTCGTGAGC-TTGTAG----------------GGAACTTTTGTTACTG
s cb4.chrX              10530147 147 + 21540570 gatgatgaggatgcaaaccgattttatgatgatgatgatactCGTCTATTTTTTGTGGA--Ccaataaa-------atcaatttttctctcacaTTCAGCTTCTAAAACACGCCG--------------CAATACAA---------------AGAC------------AAAG-------------GGATCGCGTGAC--TTGAAG----------------CTGACCT---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009218 154 -  4500979 TCGACTG----------CCAATTCT------TCGATGATACTCGTCTAATTTT--TGGA--CCAATAAA-------------CTATTTCTCATGTTCCTCTTTTGG---ACGCCGATGTGTCCCGCGTTCAATagaa-------------ttattt------------cgaa-------------aaattgcgtGACAGCTGAAGAGAGTGACCTTTCCGCCAGACAC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7748335 166 - 33334924 CATTTCG----------TTGATTTC------ATAACGATACTCGTCTATTT----TGGACCCCAATAAA-------------ctatttctcg-----attttctaT---ATCCCG-TGACTCAGATATTCTCTGCAAATCTATCTGTT-TTCATCC------------AaagttgttttcattttagtttttccgACAAACAAAG----------------ACGACCTTGGTTACGG
i caeSp111.Scaffold629  C 0 I 188
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   327987 1108 +   823664 I

a score=-5586.000000
s ce10.chrX              5186783 163 + 17718866 GAAACAAAAACATT-----CATGAGAAAT-------GCCGTATTTGTTCAATATTTCTTTCTATTAGCGTGTTTTTTTTTCATATTGTTGCGTTGAACACGATCAG--AAAAATGTTTTTAGCTATAATAATTTATTGAAAAGAATCAAAGTTATTCCAGTGACTCAAATGTTTGAA
s cb4.chrX              10530294 104 + 21540570 GACCCATAGACGTC-----CTTGGGGCAA-------GCCAAAACATATCGGCA------TGTGTT----------------------------------CCATTTGTCAAAAACATTCTTAGCT-------TTCAATGC----AATAATATTCA----------TTCAACTTTTACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009372 147 -  4500979 TACCGATAGCTATCGGCTACTTGAAACAACGTCCTTCTCGCATTAGATCAGTAACACGCTGTGTTGGCTTAACACAT----ATATCCTTGC------CGCTACTCATAAGATACATTTATAA-T-------TTTACCGA----AATCAgtgtcatt--------ttcaaagtttaaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeJap4.Scaffold18194   327987 1108 +   823664 I
e caeSp111.Scaffold629   7748501 188 - 33334924 I

a score=-1265.000000
s ce10.chrX              5186946 13 + 17718866 ATGATAAA-----------ATGAG
s cb4.chrX              10530398 13 + 21540570 ACaatgag-----------acaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009519 24 -  4500979 aaaatacgaGTAGGATTTCATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   329095 12 +   823664 atgacaag-----------acag-
i caeJap4.Scaffold18194 I 1108 C 0
e caePb3.Scfld02_0       3472643 162 +  4147112 I
e caeSp111.Scaffold629   7748501 188 - 33334924 I

a score=-2690.000000
s ce10.chrX              5186959 29 + 17718866 AAAAAAATCAATAC--------ACTTCAAAATTTAGT
s cb4.chrX              10530411  9 + 21540570 ----------------------------aaaattagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009543  9 -  4500979 ----------------------------ATAATTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3472805 23 +  4147112 aaaaaattcaa--------------tcataaATTAGT
i caePb3.Scfld02_0      I 162 I 3
s caeJap4.Scaffold18194   329107 34 +   823664 aaaaaaatcaacactTTGCACAAATGCAAACATT---
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   7748501 188 - 33334924 I

a score=118375.000000
s ce10.chrX              5186988 138 + 17718866 TGTTGGTAAATACTTTGTTGTGAACATCAGTGCAAAAACTGTTACACATCTGCTGGCATGCCACGTAGTTTTTCTCTCCTGTGGTTCCAAGAGTCACAGTTTTTGTGTTTGATGAGCCGCTGCTTACATGGAACACCT
s cb4.chrX              10530420 138 + 21540570 tgcTAGTAAAGAATTTGTTCTGAACATCTGTGCAGAAGCTGTTGCACATTTGGTGGCAGGCAACGTAGTTCTTCTCGACAGTCGTTCCAAGAGTCACAGTTTTGGTATTAGAAGATCCGCTGCTGACGTGGAAGACCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009552 138 -  4500979 TATTGGTGAAGATCTTGGTGTGAACATCGGTGCAGAAGCTATTGCACATCTGTTGACAAGCCACGTAGTTTTTCTCTCCAGCAGTTCCAAGAGTGACAGTCTTTGTATTGGATGATCCACTGCTCACATGGAAAACCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7748689 138 - 33334924 TGTTCAAAAACATTCTAGTGTTGATGTCGCTACAGAAGCTGTTGCACATTTGGTGGCACGCAACGTAGTTTTTCTCTCCAGCGGTTCCCAATGTGACGGTTTTAGTGTTTGATGATCCGCTGCTTACATGCACAACCT
i caeSp111.Scaffold629  I 188 I 314
s caePb3.Scfld02_0       3472831 138 +  4147112 TATTAGTGAAGATTTTGTTATGAACATCGGTGCAGAAGGTATTGCACATCTGCTGGCAGGCGACATAATTCTTCTCTCCAGCTGTTCCCAATGTGACGGTCTTAGTGTTTGAAGACCCGCTGCTAACATGGAACACCt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   329141 138 +   823664 AATTGGAAAACATTTTGTGATGAATGTCGGTGCAGAAGCTGTTGCACATCTGCTGACAAGCCACATAATTTTTCTCACCGACAGTGCCCAACGTCACGGTTTTGGTGTTCGAGGAACCGCTGCTCACGTGGAATACCT
i caeJap4.Scaffold18194 C 0 C 0

a score=1298.000000
s ce10.chrX              5187126 5 + 17718866 ATAAT
s cb4.chrX              10530558 5 + 21540570 GAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2009690 5 -  4500979 GTAAT
i caeRem4.Crem_Contig0  C 0 I 472
s caePb3.Scfld02_0       3472969 5 +  4147112 gaagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   329279 5 +   823664 GCAAT
i caeJap4.Scaffold18194 C 0 I 858
e caeSp111.Scaffold629   7748827 314 - 33334924 I

a score=-2238.000000
s ce10.chrX              5187131 32 + 17718866 AAAGAAACAGTTTTT---------TTTTAACTTTTCAAAAT----------
s cb4.chrX              10530563 39 + 21540570 -------TAGCTATTTGGAACCGTTTTTGTCTATTCGTATTTTCCT-----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3472974 36 +  4147112 ----------ttttccaga-----tttttcttttccacagttttttagaat
i caePb3.Scfld02_0      C 0 I 325
e caeJap4.Scaffold18194   329284 858 +   823664 I
e caeSp111.Scaffold629   7748827 314 - 33334924 I
e caeRem4.Crem_Contig0   2009695 472 -  4500979 I

a score=673.000000
s ce10.chrX              5187163 81 + 17718866 GTTAAATAACATAAAATAAGCTATAATGACGGAATAGAAAACttaaaaaaa----ttaacaaaattttttctttttttttaaatt
s cb4.chrX              10530602 64 + 21540570 GT------------------CTATGatgattaga---aaaaattaagagaaCTATTCAATAAAGCTTCTCACTCTGTTTAAAACT
i cb4.chrX              C 0 I 146
e caePb3.Scfld02_0       3473010 325 +  4147112 I
e caeJap4.Scaffold18194   329284 858 +   823664 I
e caeSp111.Scaffold629   7748827 314 - 33334924 I
e caeRem4.Crem_Contig0   2009695 472 -  4500979 I

a score=0.000000
s ce10.chrX              5187244 866 + 17718866  
e caePb3.Scfld02_0       3473010 325 +  4147112 I
e caeJap4.Scaffold18194   329284 858 +   823664 I
e cb4.chrX              10530666 146 + 21540570 I
e caeSp111.Scaffold629   7748827 314 - 33334924 I
e caeRem4.Crem_Contig0   2009695 472 -  4500979 I

a score=928.000000
s ce10.chrX              5188110 25 + 17718866 TACAAGTTTTTATCCTATATTTTTC
s caeSp111.Scaffold629   7749141 25 - 33334924 TATAAACTCATATTTTCTATGTTTC
i caeSp111.Scaffold629  I 314 C 0
e caePb3.Scfld02_0       3473010 325 +  4147112 I
e caeJap4.Scaffold18194   329284 858 +   823664 I
e cb4.chrX              10530666 146 + 21540570 I
e caeRem4.Crem_Contig0   2009695 472 -  4500979 I

a score=-150.000000
s ce10.chrX              5188135 1 + 17718866 G
s caeSp111.Scaffold629   7749166 1 - 33334924 C
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   330142 1 +   823664 G
i caeJap4.Scaffold18194 I 858 C 0
e caePb3.Scfld02_0       3473010 325 +  4147112 I
e cb4.chrX              10530666 146 + 21540570 I
e caeRem4.Crem_Contig0   2009695 472 -  4500979 I

a score=546.000000
s ce10.chrX              5188136 1 + 17718866 T
s caeRem4.Crem_Contig0   2010167 1 -  4500979 T
i caeRem4.Crem_Contig0  I 472 C 0
s caeSp111.Scaffold629   7749167 1 - 33334924 T
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   330143 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3473010 325 +  4147112 I
e cb4.chrX              10530666 146 + 21540570 I

a score=94253.000000
s ce10.chrX              5188137 103 + 17718866 TTACCTCGCATGTATACTGTCCTGCGTCTTGTTCTGGTTGATAATTTTGAATTTCCAGAATAGACCCTCTACTGTAGAACTTGTGCTTACCACCTGAAAACAC
s cb4.chrX              10530812  99 + 21540570 TTACCTCGCATGTGTATTGCCCAGCGTCTTGTTCTGgctgataattttgaatttcgagaatGGCACCGCCATTGTAGAATTTATGTTTTCCGCCTGAA----C
i cb4.chrX              I 146 C 0
s caeRem4.Crem_Contig0   2010168  97 -  4500979 TTACCTCGCATGTATATTGGCCGGCGTCCTGCTCTGGTTGATAGTTTTGAATCTCCAGAATTGAGCCTCCATTGTAGAACTTGTGCTTTCCACCTGA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749168 103 - 33334924 TTACCTCGCATGTATACTGTCCAGCATCCTGCTCCGGTTGATAGTTCTGGATTTCCAAAATGGATCCTTTGTTGTAAAACTTGTACTTTCCACCTTCAAACTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3473335 103 +  4147112 TTACCTCGCATATATATTGACCGGCATCTTGCTCTGGTTGGTAGCTTTGAATCTCCAAAATGGCTCCTCCGTTGTAGAATTTGTATTTTCCTCCttaaaatta
i caePb3.Scfld02_0      I 325 C 0
s caeJap4.Scaffold18194   330144 103 +   823664 ATACCTCGCATGTATACTGGCCAGCATCCTGCTCTGGTtgatagttttgaatttccaaAATGGCTCCTCCTTTGTAGAATTTGTGCTTTCCGCCTGAAAATGC
i caeJap4.Scaffold18194 C 0 I 279

a score=-9490.000000
s ce10.chrX              5188240 28 + 17718866 CTTGTTTCA-------------ACTAACAAATTTCCTCAAG
s cb4.chrX              10530911 32 + 21540570 CATTGTCTA------TCTTATCATTAGTATATTGTT---TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2010265 39 -  4500979 TATTCTCTACTGCTTTGTTATTCTTTGAAGATTTCT--AGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749271 28 - 33334924 TAGTTTTGT------CTCATTCACTAGTATATCT-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3473438 32 +  4147112 tcttttttc------tcctacCACTATTTTGTATTA---GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   330247 279 +   823664 I

a score=273235.000000
s ce10.chrX              5188268 354 + 17718866 ACAAACCTTCCAGGATTTGCTTCCCGTGACGAGTCCAGTAAGTTATGACACTGTCTTTCTTGGCGGATACCTCACATGAAATATTAACCGAAGCAGTCGCTAGAACTTGACCAAAGTGAAGTTGTTTGTCTCGGAAGACAATGTCCTCTGCAAAAAGTGTATTATTT---------TTTCAAAATCTCG--------------A--CAAAC-AT----TGAGACCTACCAAAAACGATTACATCCATCTTGTTCATGTATACTTTACTTCCAACCTGAGCTTGACAATAGTACACACCACTGTCCTCCACACTGGAATTTCTGATAATAAGTCCGAGAGTGTAGTCGTCTAGTTTTTTGACCTCGACGTTTCCAGTTCTAAAAC-----------
s cb4.chrX              10530943 352 + 21540570 TCCCACCTTCCAAGACTTGTTTTCCGTGACGGGTCCAATAAGTAATAACACTGTCTTTCTTGGCGGACACTTCGCATGAGATGTTGACTGAAGCCGTGGCAAGAACCTGACCAAGATGGAGCTGCTTGTCACTGAATACAATGTCCTCTGTA--------AATTCTC-------TGGTTTCAATTGTTG--------------A--TGAGT-AACGTTTTGGACTTACCAAAGACAATAACATCCATTTTGTTCATATACTTCTTACTTCCAACTTGAGCATGACAGTAGTAAACTCCACTGTCTTCTACGCTAGAGTTTCTGATAATGAGTCCTAGGTTATTctcatccaattttttcacctCCACGTTTCCAgttctaaaat-----------
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   2010304 345 -  4500979 GCTCACCTTCCAAGATTTGCTTTCCGTGACGAGTCCAGTAAGTGATAACACTGCCTTTCTTGGCAGAAACTTCGCAGGATATATTAACTGAAGCAGTGGCAAGGACCTGTCCAAAATGAAGTTGTTTGTCACGGAACACAATGTCTTCTGAA--------AGTGTCC---------GTTTAGACTAGT---------------A--TGAGT-GA----TAAAACCAACCGAAAACAATCACATCCATCTTGTTCATGTACACCTTGCTACCGACTTGTGCATTACAGTAGTAAACACCACTGTCATCAACACTTGAGTTGCGAATGATAAGTCCAAGAGTACGATCATCCAACTTCTtgatttcaacatttccagTTCTGAAAG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749299 342 - 33334924 ---TACCATCTAAGACTTGTTTTCCATGACGGGTCCAGTAGGTAATCACGCTGTCTTTCTTAGCAGATACTTCACAAGATATGTTAACAGAAGCAGTTGCAAGAACTTGACCAAAATGAAGTTGCTTGTCACGGAAGACGATATCTTCTAca--------atc-------------tttttgtttcatt--------------agCTAGCTAGA----GGGATCTCACCAAAAACAATGACATCCATCTTGTTCATGTAGACTTTGCTTCCAACCTGAGCATGACAATAGTAAACACCGCTGTCGTCTACACTGGAGTTTCGGATGATGAGTACAAGAGTGTAATCATCCagtttcttgatttcaaCGTTTCCagttctgaaat-----------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3473470 347 +  4147112 TAATACCTTCCAAGACTTGCTTCCCATGACGTGTCCAATATGTTATAACACTTCCCTTTTTGGCAGATACCTCGCATGAGATATTCACAGAAGCAGTAGCAAGAACTTGACCAAAGTGAAGTTGTTTGTCACGGAAGACAATGTCCTCTGAA--------ATCATCT---------TTTTTACGTTTTT--------------A--CAACCTGA----TATCTCATACCAAAAACAATGACATCCATCTTGTTCATGTACACTTTACTCCCAACCTGAGCATGACAATAGTAAACACCGCTGTCTTCAATGCTAGAGTTTCTGATAATAAGACCAAGAGTGTAATCATCAAGCTTCTTGATTTCCACATTTCCAGTTCTGAAAT-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   330526 381 +   823664 ACAAACCTTCCAGCAGCTGTTTCCCGTGACGAGTCCAGTAAGTGATTACATTGTCTTTCTTGGTAGACACTTCACACGAAATGTTCACTGACGCGGTAGCAAGGATTTGACCGAACTGAAGTTGCTTGTCACGGAAAACAATGTCTTCTGAA--------ATCAATCAAATTGACAATCTCAATCTATGTTTctggcagaaaaa--aaaatgaa----aatagtttaCCGAAAACAATTACATCCATTTTGTTCATGTAAACTTTGGATCCAACCTGAGCATGACAGTAGTAAACACCGCTGTCTTCGACGCTAGAGTTTCGAATGATAAGGCCAAGAGTGTAATCGTCTAGCTTTTTCACCTCAACATTTCCAGTtctgaaattcttttttttc
i caeJap4.Scaffold18194 I 279 C 0

a score=-13491.000000
s ce10.chrX              5188622 42 + 17718866 ATTAGCTGGGTTATATT----TAATA-GGAAAATAGGGA----TCTTGAAA
s caeRem4.Crem_Contig0   2010649 39 -  4500979 TCTCCTTCTTTCTAATT----TCATAGCTAAGGTAGTCGAATT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749641 34 - 33334924 --tgttttggtttcattag-atcat--tgaaaaaagaga------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3473817 35 +  4147112 --TCTCATCATCCAGTTGC-ACCATA-TGAAAGTAGACC------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   330907 29 +   823664 gttgtttgaATCTTTTAAGAATCTT--CTAA--------------------
i caeJap4.Scaffold18194 C 0 I 5
e cb4.chrX              10531295 34 + 21540570 I

a score=108886.000000
s ce10.chrX              5188664 326 + 17718866 TACCGGTCTAGTCCACCATGTTTCTTCCAGATCATTCCTGGTTTTTCTCCATTACTATCAGTCTTCTTAATAGAGCACACAAGAGAAATCTGGTGACCAATTGGTTTTTGAACTGGGTTTGCATTTGGGCTAATGGAAATGGTTATTTCTTCTTCTGAAATGT-TCA-------TTCTTATGAATAATAACACTTTTTAAATTT--------CTTTTCAACAAACCT---GCAAACGAATAAGAGACTAGGAAAACTAG---TGGTAAA----AGTAAAAGACATAATTTAGTCATCCTGTTTTCAAGGAAGAATTTCAAGGAGACAACCTAGTCCAAATGAT----AGTAGCCAC
s cb4.chrX              10531329 292 + 21540570 CACCTATCAAGTCCTCCATGCTTCTTCCAAATCATTCCTGGCTTTTCATCTCCAGCTCC------TTTAACCGAGCAAACCAACGAGATCTGGTGACCGATTGGTTTTTGGACTGGGTTTGCTTTTGGGCTGATGGAAATGATTATTTCAtcatctgaaa----taa-------ttttt--------taaatatctttagAATCATTGAACATGGTTCACCTG--CT---GCTACTG---------CTAcagaaaagag---gagaaaa----ataaGGGCAAAACATTTAGCCATCCTGTCT-----GGTGG-------------ACCCAAGTCAGAATGACACGGAGTGGCTAC
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   2010688 303 -  4500979 TACCTATCAAGTCCACCATGTTTCTTCCAAATCATTCCTGGTTTCTCTTGGAAATCACC------TTTCACCGAACATACAAGAGAAATCTGATGACCGATTGGTTTTTGAACGGGATTAGCATTTGGACTGATGGAAATAGTTATATTTTCCTCTAAAA----TAGGATCAACTGTTT--------CGAGTTCTTCCTGTATT------TATTCCTTACCTG--CTAGGGCAATCGT------ACCTACAGAAACAAGTACAAGACAA----AGTAGAGCAAGAATTTTAGCCATCCTGTCTCCACCGGTGG-------------TTGTGAGCAAGAATGAT----AGTAGCCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749675 294 - 33334924 taccTATCAAGTCCATCGTGTTTCTTCCAAATCATTCCTGGTTTCTCATCGCTAGTACC------TTTGACTGAACACACGAGAGAAATCTGGTCTCCGATTGGTTTTTGAACTGGGTTAGCTTTTGGACTGATCGAAATCACGACATCTTCGtctgaataatttca-------ttatt--------ctctgtttttcaacGTT--------TTACTCACCAG--CT----GAACATTG-AGTAACAAGTAGTA-AAAT---GGGGAAA----ATTAAGAGGAAAGTTCTAGCCATCCTGTTTCCAACGGTGG-------------AATCAGGTCAGAATGAT----GGTAGTCA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3473852 298 +  4147112 TACCTATCAAGTCCTCCATGTTTCTTCCAAATCATTCCTGGTTTCTCAGTGGTTGAACC------TTTGATGGAACAGATCAAAGAGATCTGATGTccaatatgtttttgaagttgatttACATCTGGACTAATTGAAATAGTCaactcttcttctgaaacttctta-------TCCGT--------TTCTTCTCTTGATCAAT------CCCTACTCACCGG--CT---CTTACATT--ATAAAGACACAGAACAAAT---agggaaa----aataggaagaagCTTTTAGCCATCCTGTTTCCGACCGTGA-------------AACCAAGTCAGAATGAT----AGTAGCCAC
i caePb3.Scfld02_0      C 0 I 1235
s caeJap4.Scaffold18194   330941 305 +   823664 TACACATCCAGGCCTCCATGTTTTTTCCAGATCATTCCCGGCTTCTCATTTctgatttc---atttttcacagAGCAGACTAGAGAGATTTGATGTCCAGCAGGTTTCTGCACTGGGTTCACACTCGGACTGATTTGAATTATGTTCTCCtcctctgaa-----ttt-------ttttt--------cttcaaagcacagagtt------tttttttcaattg--gtAACGGTACCTGCGATAATCCCacagaagaaag---aaaaaaatagcagaGAAGCGAAAATTGGAGCCATACCGATTCGAAGAGTTG-------------AAGTTGGCCCAAATGAT----AGTGGAGAC
i caeJap4.Scaffold18194 I 5 C 0

a score=43795.000000
s ce10.chrX              5188990 121 + 17718866 CGCTAC---TAGA---GACTGTTGTGAAG---------GCTTCGTCAGGTGTCAGTA-------------AGA-TTCATTCTTGTAAAATACTCGAGGCTTGGGTTACCAC---CACTGCCCTCCTCATCTCGCTCGCTATTTTTTCAGATTA
s cb4.chrX              10531621 149 + 21540570 ---TAGGAATGAAAGGAGGAGTTGTGAAGAAGTGTTTTGTCTCGTCAGGTGTTAAGACGTCCTTC-TCCCAGAAATGACTCCTACAAAATACTAGAGGCTTGGGTTACCACCATCACCACTCTCCTCGCCGCGCTcgctcttttttcagatta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2010991 126 -  4500979 ---TAG---TGAA---GGCGGTTGTGAAG---------TTTTCGTCAGGTGTTTAGACGTCCATCAGTTTAGA------TCCTATAAAATACTAGAGGCTTGGGTTACCAC---CACCGCTCTCCGCTTCTGCctcaatcttttttcagatta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7749969 125 - 33334924 --CTAG---TGAA---AGCAGTTGTGAAG--------TTTTTCGTCAGGTGTTTAGACGTACCTC----CAGA-TTCACTCGTATAAAATACTTGGAGCTTGGGTTAC------CACTACTCTCCACTCCCGTctcacta-tttttcagatta
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   331246 128 +   823664 TTTTTG---TGAAAGGGGCTGTTGTGAAG---------TTTTTGTCAGGTGTCTGGACGTCCTTC-----AGA-TTCACTC-TATAAAATTGTAGCGTCTTGGATTAC------TACCGCTCTCTGCTTTTTGTCCGCTCTTTTTGCAGATTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3474150 1235 +  4147112 I

a score=62971.000000
s ce10.chrX              5189111 75 + 17718866 AAAGAACGCCGAAGGCTATTAAACAGGCTGGAGTCTTTT-GAAAAACGTGA-TGTA-GGTGATTGAGGGAGACTATTA
s cb4.chrX              10531770 76 + 21540570 aaagaACGCCGATGCCCATTAAACAGGCGGCAGCTCGTT-GAAAAACGTGATTTCG-AGTGATTGAGCGGGACCATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2011117 75 -  4500979 aaagaACGCCGAAGGCCATTAAGCTGGCGGCACCTCATT-GAAAAACGTGA-TGAG-GGTGATTGAGAGAGGCTATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7750094 75 - 33334924 aaagAACGCCGATACCCATTAAACAGGCGGCAGCTCAAC-GAAAAACGTGA-TGAT-GGTGATTGAGAGTGCCCATTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3475385 75 +  4147112 aaaGAACGCCGATACCCATTAAACAGGCGGCAGCTCATT-GAAAAACGTGA-TAAA-GGTGATTGTGAGAACCCATTT
i caePb3.Scfld02_0      I 1235 C 0
s caeJap4.Scaffold18194   331374 77 +   823664 AAAGAACGCCGATAGCCATTAAACAGGCGGCAACTCACCGGAAAAACGTGA-CGAGAGGTGATGAACGGGGTCAATTA
i caeJap4.Scaffold18194 C 0 I 1454

a score=10413.000000
s ce10.chrX              5189186 113 + 17718866 ACTCTGGATAATTGTTCTGA-------TGTTTTTAATGAGAAAGCTCAGTGATTTGTGCACTTCATGATAGTCTGG----AAAAAGGACAATTTTATTGAAAATAAATCATCAAACATCATGAA
s cb4.chrX              10531846 102 + 21540570 AGATGAGTTAATCGGT-CGA-------GAAGACATGAGGGGAAGCCTT----TTTGCACACATGCTAGCACTTTAAGTGAAGAAAGGTCAACAAGATTG------ATTCATCaaacatct----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2011192 107 -  4500979 AGACAAGTTAATTGCT--AA-------GAAGTCCTGAGTGAAAACATCGAAACGTGTGCACATGATAGCACTTTGA-TAAGAAAAGGTCAATTTGATTGGG---AAATCAtcgaacatca----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7750169 105 - 33334924 AGACTCGTTAATTGCCTTGAGACGTGGAATgatct------ccatttt----tttgtaaacttGATAGCCCTTTGA-TAAAGAAAGGTCATTTGGGTTG------AGTCAGCA--CATCAGAAA
i caeSp111.Scaffold629  C 0 I 7
s caePb3.Scfld02_0       3475460 104 +  4147112 AGACGAGTTAATTGGTTCGA-------AGTGCTCTGAGAGACAACATT----TCTG--ATCAGGATAGCACTTTGA-TAAGAAAAGGTCATCTAGACTG------AGTCAGcaatcatcaaaaa
i caePb3.Scfld02_0      C 0 I 1309
e caeJap4.Scaffold18194   331451 1454 +   823664 I

a score=1203.000000
s ce10.chrX              5189299 14 + 17718866 TTAAATGTGAGAAA
s cb4.chrX              10531948  5 + 21540570 ---------aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2011299  5 -  4500979 ---------aaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7750281 14 - 33334924 CTGTACCTGAGAAA
i caeSp111.Scaffold629  I 7 I 955
e caePb3.Scfld02_0       3475564 1309 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I

a score=-1131.000000
s ce10.chrX              5189313  6 + 17718866 CTTTTA-------------------
s cb4.chrX              10531953 25 + 21540570 aatttaaattaaataaaaaaattta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2011304  6 -  4500979 ctttta-------------------
i caeRem4.Crem_Contig0  C 0 I 984
e caePb3.Scfld02_0       3475564 1309 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e caeSp111.Scaffold629   7750295 955 - 33334924 I

a score=455.000000
s ce10.chrX              5189319 5 + 17718866 AATTT
s cb4.chrX              10531978 5 + 21540570 aattt
i cb4.chrX              C 0 I 2158
e caePb3.Scfld02_0       3475564 1309 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e caeSp111.Scaffold629   7750295 955 - 33334924 I
e caeRem4.Crem_Contig0   2011310 984 -  4500979 I

a score=0.000000
s ce10.chrX              5189324 2014 + 17718866  
e caePb3.Scfld02_0       3475564 1309 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e cb4.chrX              10531983 2158 + 21540570 I
e caeSp111.Scaffold629   7750295  955 - 33334924 I
e caeRem4.Crem_Contig0   2011310  984 -  4500979 I

a score=449.000000
s ce10.chrX              5191338 18 + 17718866 GTAGAAATGAGTGGGCTT
s caeRem4.Crem_Contig0   2012294 18 -  4500979 GTCAAAGTGAACAGGCAG
i caeRem4.Crem_Contig0  I 984 C 0
e caePb3.Scfld02_0       3475564 1309 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e cb4.chrX              10531983 2158 + 21540570 I
e caeSp111.Scaffold629   7750295 955 - 33334924 I

a score=15053.000000
s ce10.chrX              5191356 121 + 17718866 ATAAAGAATGC-TCCGGGAGGTCACACTCCTCCGAACCTGCAATAAATTTTACGG--TTATCGAGTGTTGTCCCGTCGTGTAGAAAACAATCTTGCAAATGCAGAACGTTTCTC-ATG---------ATGTTTT
s caeRem4.Crem_Contig0   2012312 107 -  4500979 ACAATAGATGCTTCTGAGAAGTCATCCTCCCCATGACCTACAATAAATTTCAC-----------GTGTCATTAAAAGTAG--GAACAGAGTCTACCAAAT---GAGCACATTAC-ATGT--------AGAGT--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   7751250 126 - 33334924 ACAAAGGATTT-TCTGGGAGGTCACACAC-TCCGGTCCTGCAATAAATTTTATGGGTTTTCCGTGTGtcattaatttcag--aaaaccaatCCTGCAAAT---GATCGCTTTCT-ATGTGCAAAATGACAGTTT
i caeSp111.Scaffold629  I 955 I 1
s caePb3.Scfld02_0       3476873 119 +  4147112 ACAAAAGATGC-TCTGGGAGGTCACACACTTTCGACTCCGCAATAAATTTTACGG--TTTTCGTGTGCCACGAAGTTCAGT-AGAACCAATCCAAcaaat---gaacactttttcatgt--------ATGGTTT
i caePb3.Scfld02_0      I 1309 I 587
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e cb4.chrX              10531983 2158 + 21540570 I

a score=69.000000
s ce10.chrX              5191477 2 + 17718866 CC
s caeSp111.Scaffold629   7751377 2 - 33334924 CT
i caeSp111.Scaffold629  I 1 C 0
e caePb3.Scfld02_0       3476992 587 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I
e cb4.chrX              10531983 2158 + 21540570 I
e caeRem4.Crem_Contig0   2012419 3 -  4500979 I

a score=-1474.000000
s ce10.chrX              5191479 81 + 17718866 AACTCGTATCTGTTCTTGAACCCAGCGATC-----CCTGTTCAGAAAATCTGACAAGTTTACAAC-----------GAAGTTGTTCTTGTGGT--AACG
s cb4.chrX              10534141 84 + 21540570 aaatggtttttttttttgaacccaTCGTCCTCCTGTTCACTCA------TTGACAAGCATACAACACTTGTCG---GAAGTGTTTTCCTTGGG------
i cb4.chrX              I 2158 C 0
s caeRem4.Crem_Contig0   2012422 62 -  4500979 AGATGGttttttt----------------------tCCGTTAA------CTGACAAACACACAACACTTGTCA---AAAGTGTTTTCTGTGGT------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   7751379 49 - 33334924 -----ATTGTTTC----------------------TGCGCTAA-------------------ACCtcttgttgaaaaaagtgcCTCTTGTGGTAA----
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3476992 587 +  4147112 I
e caeJap4.Scaffold18194   331451 1454 +   823664 I

a score=-1348.000000
s ce10.chrX              5191560 7 + 17718866 GAAAAAG
s cb4.chrX              10534225 4 + 21540570 ---TAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2012484 4 -  4500979 ---AAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7751428 2 - 33334924 -----AT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3477579 7 +  4147112 GATAAGA
i caePb3.Scfld02_0      I 587 C 0
e caeJap4.Scaffold18194   331451 1454 +   823664 I

a score=132914.000000
s ce10.chrX              5191567 246 + 17718866 CAATCTTTAG--CCACCGACGTTGCATTAGAGCTTTTCACGTAAGCTACCTCTTCTCGACTCTTGTTCTTAACACTGGCTGAAAGGTTTTTT--ACACACATTC----ATCATGACGGCTA-------------AA---GGACGTC-------------CACGAAAGAACAACTGACGACCGTCCGCATTCATTAATAAATGTCGTGCCATCGT-CGATGTTTACTACACA----AGACT------------TTCA-TCGAGC-------CCAAGTTGAC--ACACAAAACGACTCT---------AAGGTGTC-ACTTT
s cb4.chrX              10534229 294 + 21540570 TAATCTTTAG--CCAACAACGTTGCATTAGAGCTTTTCACGTAAGCAACCTCCAGTTGACTCTTATCTCTT----TTAGTGAATGGTTTTTT--ACACACATTTATTCATCATGACAGCCA----AGGGGACGGGA---CGACGTCCCTCCTCTCTTATCCCGAAAGAACAACTGTCGACTGTCCGCATTCATTAATAAATGTCGTGCCATCGTCCGATGTTTACTACACATACGACATccctaaaacttttttct-gtgagCTGCTGCTCTTGGTTGACA-ACACAAAAGCACTTC---------AAggtgtcaatttt
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2012488 255 -  4500979 TAATCTTTAG--CCAACAACGTTGCATTAGAGCATTTCACGTAAGCAACCTC--GTTGAGTCTTATCTCAG----TCACTGAATGG--TTTT--ACACACATTT----ATCATGACAGCTAGTAGAGAATAACGGG---GGACGTC-------------CCCGAAAGAACAACTGACGACTGTCCGCATTCATTAATAAATGTCGTGCCATCGT-CGATGTTTACTACACACAGAAAACC------------TTCG-CTGAGC-------CCTAGTTGAC--ACACAGAACCACTCA---------GAGGTGAC-ACTTT
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold629   7751430 251 - 33334924 CGATCTTTAG--TCAGTAAGGTGAGAATTGAGCTTTTCACGTAGACGA-----------CTTTCATCcc--------gaaaaatggtttttt-tacACACATTT----ATCATGACAGCAAGTGGGGAAACAgggggggggACGTCCTTCT--------CCCGTTAGAACAACTGACGACCGTCCGCTTTCATTAATAAATGTCGTGCCATCGA-AGATGTTTACTACACACA--GAACC------------TTCT-CTGAGC-------CCGAGTTGAC--ACATAAAACCACTCA---------GATATACC-ACTTT
i caeSp111.Scaffold629  C 0 I 82
s caePb3.Scfld02_0       3477586 250 +  4147112 CAATCTTTAA--TCAGCCATGTCACATTAGAGGTTTTCACGTAAGCTATCTC--AATATCTCTTGACCC-----------AAATGGTTTTTTACACACACATTT----ATCATGACGGCTATTGAGGAAACAGGGG---------TCGTCC--------TGGGTTGGAACAACTGACGACTGTCCGCATTCATTAATAAATGTCGTGCCATCGA-AGCTGTTTACTACGCACA--ACCTT------------TCCTCCTTAGA-------CCAAGTTGAC--ACACAAAACCACTCA---------AAGGTgcc-acttt
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18194   332905 242 +   823664 CGATCTTTAGGCTTGAGCAGGTTGCATTAAAGCATTTCACGTAAGCATCTTT--GTTGGCACTCTA---------TCGGCGAATGG-TTTTT--ACCCACATTC----ATCATGACGGATCGGCGAAAGAAACGGC---------C-------------CCCGAAAGAACAACTGACGACCGTCCGCATTCATTAATAAATGTCGTGCCATTGG--AATGTTTACTACACGCA---------------------CT--------------CCAAGTTGACAGACACAAAACCACTCTGCCGACCGGAACGTGTC-ACTTT
i caeJap4.Scaffold18194 I 1454 C 0

a score=-21090.000000
s ce10.chrX              5191813 69 + 17718866 GGTAA---TGCCGAC-ACTTC-----------TGGCTTCTTAATTTCTACAATTCCTATG---GCACAACTATTCAAACTAATTTTC
s cb4.chrX              10534550 66 + 21540570 GATAA-TGTGCTTTTGTTATCTCAAAGAGGAACTCTTTTTTCGttacttctattttttc-------------------ttcctgcT-
i cb4.chrX              I 27 I 15
s caeRem4.Crem_Contig0   2012769 55 -  4500979 GTTAACTGTGCCAGT-TTACC---------AACAGTTAATAGGTT--TCCAAGTTTTGT-------------------TTACTATT-
i caeRem4.Crem_Contig0  I 26 C 0
s caePb3.Scfld02_0       3477856 60 +  4147112 GGTGTTCGTTCTCTG-ATATC--------------TTCCTTCCTT--Cacaatttttgca---gtttgagt------attattttt-
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18194   333147 59 +   823664 ---------------------------TCAAGCTTTTCACttgtgttttttattgttattctcgctcaagtttaaaaatttttctc-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   7751681 82 - 33334924 I

a score=63078.000000
s ce10.chrX              5191882 216 + 17718866 AAAATTGTACTCGGTGCAA------GT----TCGTACACTTTTTC-------------------------GTCTGCA-----GTGATGATCAACTAATAGACGATCATCTCATTCGTC--AGGTATTTGAGATGCGAGATAG--AGAGATTGGCAAATGAGATTTGATTTCG--AATCATTGCAA------------------------------------------------AAAT-TCTCTTTC---------CC----TCTCCCTC--CCTCTAAATTGTTTTTTGTTACAGCAGACA--GGTATCAAA-AGCGTTCAT--TTTT---CTT
s cb4.chrX              10534631 206 + 21540570 GAATTCGTACTAGGTGCAA------GT----CGGT-CGC-----------------------------------------------TGATCAACTATTAGAAGATCA------TCTTC--AGGTAGTTGGGGAGA-----AA--GAAGATTGGCAAATGAGAtttcatttcgaaa---atcgcaa------------------------------------------------aaat-ttcCTCTCGTCTCGGGGCTGCTCTTCACTTTTGCTCTCCAATTGCTTTTTGTTACAACCAGACGACGTATCAAACAGCGTTCATTCTTTT---CAC
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2012824 223 -  4500979 ---TTCATAGTACGTGCAAACTTCCAC----CAGTACGCTTTGTT--------------------------TC--TG------AAGTGATCTACTATTAGAAGATCATCGCCTTCGTC--AGGTATTTGAGAAGCGAGATAG--GAAGATTGGCAAATGAGATTTGATTTCG--A---ATTGCAA------------------------------------------------AAATCTTCTTCTCGT-TCAATTCT----TTCACTTTTGCTCCCCAATTGCTTTTTGTTACAACCGGCT--CGTATCAAA-AGCGTTCAT--TTTT---CAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7751763 223 - 33334924 AAACGTGCTCTCGGTGCAA------GTATTATAGTACACTCCTGT-------------------------CTCATTG-----CCCGTGATCAACTATTAGAAGATCATCACATTTGTC--AGGTATTTGAGATGCGAGATAGGCGAAGATTGGCAAATGAGATTTGATTTCG--A---ATTGCAC------------------------------------------------AAAA-ATCCTCTTC--------CT----TTCACTTT--CCTTCCAATTGCTTTTTGTTACAGCCGTCA--CATATCAAA-AGCGTTCAT--TTTCACACCT
i caeSp111.Scaffold629  I 82 I 1
s caePb3.Scfld02_0       3477916 212 +  4147112 gaaatttcgctCGGTGCAA------G-----TAGTACACTTTTGT--------------------------TCCTTG------CCGTGATCAACTATTAGAAGATCATCACATTTGTC--AGGTATTTGAGATGCGAGATAG--GAAGATTGGCAAATGAGATTTTATTTCG--A---ATTGCAC------------------------------------------------AAAA-ATCCTCTCCG-------CC----ACTATCTT--CCTCCCAATTGCTTTTTGTTACAGCATTCA--CGTATCAAA-AGTGTTCAC--TTTT---CTT
i caePb3.Scfld02_0      C 0 I 66
s caeJap4.Scaffold18194   333206 257 +   823664 --aaactcGGTTATTGTAT------AC----TTTTTCGCTTGCTCTGAGACCGCACCGAGATGAGACGAGCTCAGTGTCGTGGAAGTGATCACCTAACAGACGATCAGTCGACTTGCCCAAGGTATT--------------G--CGAGATTGGCAAATGAGATTTCgaattg--a---attgcaattgaatagaatagaataggatagaatagaatcgaatagatcgaaGCGCAAAA-ATCGACTCGT-------CG--------------------AATTGCTTTTTGTTACAGCATCAC------TCGAA-AGTCTTCAT--TTT-------
i caeJap4.Scaffold18194 C 0 C 0

a score=1827.000000
s ce10.chrX              5192098 26 + 17718866 ---ATCCAC--CTGTGATTTTGTTAATATTA
s cb4.chrX              10534837 26 + 21540570 ---ACCTGG--CACTAAACTTTtgtgcagaa
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2013047 26 -  4500979 ---ACCTGT--cagtaaacttttgaaaagca
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold629   7751987 26 - 33334924 ---TTCTGC--CAGtcaacttttaaaaatca
i caeSp111.Scaffold629  I 1 I 41
s caeJap4.Scaffold18194   333463 29 +   823664 CCCACCTGTGGCAGTAAACTTAGAAATTG--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3478128 66 +  4147112 I

a score=-2905.000000
s ce10.chrX              5192124 24 + 17718866 ---CTTCAATATGCCTAAAG------TTGCTAA
s cb4.chrX              10534865 27 + 21540570 ---aaaaaaca---ctaaagAGTGAAACGTGAC
i cb4.chrX              I 2 C 0
s caeJap4.Scaffold18194   333492 23 +   823664 TCGCAAAAAGA---CAAAAC------AACTGA-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3478128 66 +  4147112 I
e caeSp111.Scaffold629   7752013 41 - 33334924 I
e caeRem4.Crem_Contig0   2013073 52 -  4500979 I

a score=-2654.000000
s ce10.chrX              5192148  9 + 17718866 ---------------ATTTTATTT--
s cb4.chrX              10534892  7 + 21540570 -----------------GGTTTAT--
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold629   7752054  9 - 33334924 ---------------attgttttt--
i caeSp111.Scaffold629  I 41 I 10
s caeJap4.Scaffold18194   333515 26 +   823664 ACTATCAGAAAATGAACTCTTTATCT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3478128 66 +  4147112 I
e caeRem4.Crem_Contig0   2013073 52 -  4500979 I

a score=-294.000000
s ce10.chrX              5192157 6 + 17718866 GGTTCG
s cb4.chrX              10534901 6 + 21540570 GTTTCG
i cb4.chrX              I 2 I 11
s caePb3.Scfld02_0       3478194 6 +  4147112 GGTTCA
i caePb3.Scfld02_0      I 66 I 18
s caeJap4.Scaffold18194   333541 1 +   823664 G-----
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold629   7752063 10 - 33334924 I
e caeRem4.Crem_Contig0   2013073 52 -  4500979 I

a score=33319.000000
s ce10.chrX              5192163 148 + 17718866 TTGATTTCAACGTTTAATG----------AGTTTTCTA----------AATCATAGCTGCACATGCTA-------AAAAGCAAAAAA------TCGAATAGAGAGCGG-------------AACACATCTGCTTTTGAGCAG-----CCTTTTCA-------------------TTTCTCTCA--TTTTTGTTT-T-----GCACTTGCAAATACTACATGCAGGT----
s cb4.chrX              10534918 189 + 21540570 tcgatttt----tttaatgattccGCTTTATTCTCTCGT---------ATCCACA--TGCACATGCTA-------AAATCAAAAAGACGTACGAAGATATGCAGATGG-------------AACACATCTGTTCTTGAGCAGCATcatctttttgttgttttttttgcttcaattttatctcg--tttttgtttcttctgcACTTCTGCAAATGCATCAACCAGGT----
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   2013125 151 -  4500979 ttga-ttt----tttaatgattccG----AATATCCTG----------AGCCACA--TGCACATGcta-------aaatcaaaagaaaaagcaagTAT-CGCAAACGG-------------AACACATCTGTTTTCGAGCAG-----TCTTTTTA-------------------TTTATCTCG--TTTTTGTTTCT-----GCATTTGCAACTGAGTTG--CAGGT----
i caeRem4.Crem_Contig0  I 52 I 581
s caeSp111.Scaffold629   7752073 164 - 33334924 ttaa--tt----tttaatgatcTCG----CTTTTTCTT----------AGCCACA--TGCACATGCTT-------AAATCttgagaaatgagaacaaaaaatgaacggacccacacacacacacacatctGTTTTTGAGcag-----tcttcttc------------------ttttatctc---TATTTGTTTCT-----GCACTTGCAACTGCCTTG--CACCT----
i caeSp111.Scaffold629  I 10 I 11
s caePb3.Scfld02_0       3478218 154 +  4147112 ttaatttt----tttaatgatctCG----CTTCTTCAT----------AGCCACA--TGCACATGCTT-------AAAtcttgaata-----gaaaaaaaatgaacgg--------agAGAAACACATCtgtttttgagcag-----ttttccTC------------------ATTTATTTCG--TATTTGTTTCT-----GCACTTGCAATTTCATTG--CACCT----
i caePb3.Scfld02_0      I 18 I 11
s caeJap4.Scaffold18194   333542 156 +   823664 -----------------TAatccga----actttttttttattgcacaAGTCACG--TGCACATGCTTTTCATTCTAATTCCATCCACCCCCAA-------------G-------------ACCACATCTGTTTTTGAGCATTTGcttgtgtttt------------------ttttacttcatttATCTGTTTCT-----GCACTTGCAGCCGCATTG--CAGGTGTGT
i caeJap4.Scaffold18194 C 0 C 0

a score=1205.000000
s ce10.chrX              5192311 2 + 17718866 AG
s cb4.chrX              10535107 2 + 21540570 GG
i cb4.chrX              C 0 I 1229
s caeSp111.Scaffold629   7752248 2 - 33334924 GG
i caeSp111.Scaffold629  I 11 C 0
s caePb3.Scfld02_0       3478383 2 +  4147112 GG
i caePb3.Scfld02_0      I 11 I 3
s caeJap4.Scaffold18194   333698 2 +   823664 AG
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=409.000000
s ce10.chrX              5192313 21 + 17718866 TTCTAAACTT---TTAACTGGGTT--------
s caeSp111.Scaffold629   7752250 24 - 33334924 TTCCATGTCTGTATTAACTGGTTT--------
i caeSp111.Scaffold629  C 0 I 492
s caePb3.Scfld02_0       3478388 24 +  4147112 TTCTCTGCTTGTATTATCTGGCTT--------
i caePb3.Scfld02_0      I 3 I 17
s caeJap4.Scaffold18194   333700 23 +   823664 ---------TGCATTAGTCCGATTTGCGTGTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10535109 1229 + 21540570 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=-1055.000000
s ce10.chrX              5192334 46 + 17718866 GTTATGTATGTATGCATTT---TTTTTCA-----AGTCAATCTGATTTTCATTT
s caePb3.Scfld02_0       3478429 54 +  4147112 GTTCAGtgtgaattcaatgaaattatTAACGGCTAGTCAGTTgaatcaatatat
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194   333723 49 +   823664 -----GTACATATTTATGTCCGGTTTTGCTGCTAATCTAATTCGTTGTTCATTT
i caeJap4.Scaffold18194 C 0 I 939
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=351.000000
s ce10.chrX              5192380  92 + 17718866 TTTGTCAAAAATTCTCTTCAGTATTTTTGTTCATTCGACATCAAAATGTG--TAAAAA----TTTGAA-----CTGTAAGaaaatttaattataataa-----tgatt
s caePb3.Scfld02_0       3478483 100 +  4147112 ttttttgta---ttactgctgttttttttttcatt-----ttgaaatgtagTTAAAAACACTTTTACATCCGTCTTGaatacaacttttttgtattaaaAACATGATT
i caePb3.Scfld02_0      C 0 I 244
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=0.000000
s ce10.chrX              5192472 177 + 17718866 aaaaaaaaagaaattttaattataataatGATTAAAGTTACAAAATTTGTTTAAAGCAAATTCAGCTGTATTTGTCGTTTTGATACTATCGATTTGAAAAAGTTAGGTAAATTTAGTAAATGTTTGTCAGTAAACCTGAAAATTATCATTCTTATTTTTATTATGCGCTAAAACAAA
e caePb3.Scfld02_0       3478583 244 +  4147112 I
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=1570.000000
s ce10.chrX              5192649 161 + 17718866 AAATTGCATTATTTTATAAAATTTTTTGATAATCTGAACATCGTTTAAAATGACATAATTTTTTCTAGAATATTTATTTTCATATTCACTCTCTAACTTTAAAAAAAAGTTTCGTTAGAAAATTGATTCAAATTAACATGAAATTCAATAACAAAATTTTG
s caePb3.Scfld02_0       3478827 133 +  4147112 AAATTGAAGTATTTTGGAAACGTTTCGGATTTAGTAAAAAT---GTAACATGCAACTGATTTTCCAA----ATTAATTTTC---CTCGTCCACAAA---TAATGataagtttc--taaaaaattattttag-------------tccacatcaaaattttg
i caePb3.Scfld02_0      I 244 I 151
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=0.000000
s ce10.chrX              5192810 181 + 17718866 AATCTACTGTTGTTCTAACTATaaagtggggttcggccagcggggaaatcattttaaacttgtcatatgatgcttaaatgaccaaatgtcattcttaaaatgttaaaaaaattttcGGAAGATTTGTATATTGAGTCCATAAGGGGCGCAAACTGAGTTTTTGTCGCGTTTCAAAAAATCT
e caePb3.Scfld02_0       3478960 151 +  4147112 I
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=882.000000
s ce10.chrX              5192991 32 + 17718866 AGAACTCATTTTCGAACCCCTACAATGTTAAA
s caePb3.Scfld02_0       3479111 32 +  4147112 GGAAATCGTTTTAGGACCACCATATGGCCACA
i caePb3.Scfld02_0      I 151 I 175
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=0.000000
s ce10.chrX              5193023 188 + 17718866 ATGTGAATATTTCAAACATAAATCTAAAAGAAAACGATTTTTTAATCAACAACTTCGAATCAAATTGGGTTTTACTGCTTTTTGCCACAAAATCAGATATGTTCATTTTGGCACTATAGATTTTGCCATTTGTTATTTTTTCACTGGCTGTACTCCTTTATTGGAATACGTCTTTGTATAATTACCGT
e caePb3.Scfld02_0       3479143 175 +  4147112 I
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=142.000000
s ce10.chrX              5193211 116 + 17718866 CGCGGAATTCTAATATTATGGGTGATCACGTGACAGTTGATATTTTTTTCTTGACAATTGATAATGATTTCTGTTT-----TTTGAACGTTATT-CTAGTGGTATAAAAAGAT------AGCATTTTG
s caePb3.Scfld02_0       3479318 112 +  4147112 CACCGGTGTCTATAACTTGGAGTGAT----------------TTATTTTCTCGAGAATTGATAAGAATATCTGCACATCAAGTTGAACGGCGTTTCGGGTGCCCCCTTAAGATTCTTTCGACGTCGAG
i caePb3.Scfld02_0      I 175 C 0
e caeJap4.Scaffold18194   333772 939 +   823664 I
e cb4.chrX              10535109 1229 + 21540570 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=3421.000000
s ce10.chrX              5193327 24 + 17718866 AACCACTTCCCGTAAATCTC--------CGAA
s cb4.chrX              10536338 32 + 21540570 AACTTTTTCCCGTAAATCTCTCTCCCGTTGAA
i cb4.chrX              I 1229 I 7
s caePb3.Scfld02_0       3479430 24 +  4147112 ACCCACTTCTCATAAATCTC--------CGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   333772 939 +   823664 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I
e caeRem4.Crem_Contig0   2013276 581 -  4500979 I

a score=3966.000000
s ce10.chrX              5193351 40 + 17718866 AGTTTCTTGGCCTACTCTTATGTTCTTCCCGCGC-CGCTGC
s cb4.chrX              10536377 27 + 21540570 GGGTTTTTGACCTACTGATCCGTG--------------GGC
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2013857 41 -  4500979 agtctTTTGATTTATTATTTCTCGATACTCACTCTCGCAGC
i caeRem4.Crem_Contig0  I 581 C 0
s caePb3.Scfld02_0       3479454 41 +  4147112 AGTTTCTTGGCCTACTCCTCCTTTATTCCCGCGCCCGCTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   333772 939 +   823664 I
e caeSp111.Scaffold629   7752274 492 - 33334924 I

a score=6075.000000
s ce10.chrX              5193391 44 + 17718866 TTTATTGGTTTCTTCA-----CCCCGCAGACGCCCACT----ACCACGCCC----------GG
s cb4.chrX              10536404 63 + 21540570 TTTATTGGTTCcgtcacccccccccccccgctcCCATTTCCGAAGACGCCCCCactaaaataa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2013898 54 -  4500979 TTTATTAGTTTCTTCA-CCCGGCCAACCAACGCCCACCCGCCACCACGcccca--------aa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7752766 40 - 33334924 TTTAGTGGTTTTCTCA---CACTAACCTAACGCCCACC-------aaac-------------a
i caeSp111.Scaffold629  I 492 C 0
s caePb3.Scfld02_0       3479495 49 +  4147112 TTTATTGGTTTCTTCA---CCCCCAACCGACGCCCACC-------ACGCCCCttccc----ga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   333772 939 +   823664 I

a score=206571.000000
s ce10.chrX              5193435 615 + 17718866  
s cb4.chrX              10536467 715 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2013952 602 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7752806 585 - 33334924  
i caeSp111.Scaffold629  C 0 I 391
s caePb3.Scfld02_0       3479544 597 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   334711 674 +   823664  
i caeJap4.Scaffold18194 I 939 C 0

a score=182.000000
s ce10.chrX              5194050 2 + 17718866 AA
s caeJap4.Scaffold18194   335385 2 +   823664 AA
i caeJap4.Scaffold18194 C 0 I 559
e caePb3.Scfld02_0       3480141 0 +  4147112 C
e cb4.chrX              10537182 0 + 21540570 C
e caeSp111.Scaffold629   7753391 391 - 33334924 I
e caeRem4.Crem_Contig0   2014554 0 -  4500979 C

a score=-1961.000000
s ce10.chrX              5194052 2 + 17718866 AG---
s cb4.chrX              10537182 4 + 21540570 -GCAA
i cb4.chrX              C 0 I 1181
s caeRem4.Crem_Contig0   2014554 3 -  4500979 -ACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3480141 2 +  4147112 AG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I

a score=-3380.000000
s ce10.chrX              5194054 107 + 17718866 GTATCTCTACTTTAATGCT------------TCTCAGAAAGTTTCTCACGA-----ATCGAGTTCAGATTTGAAGATATTTTGGTACT------TTTTCAAGAATGACTTCAA----------------------TGTTTTCAATAATTTTT
s caeRem4.Crem_Contig0   2014557 137 -  4500979 ----CTACACCTCAGTGTTCACTGTTGTAAAGTTAAggtattcttttttat-----ttcattcttctATTCTGAA----TCTGACAAATTGCAGTTATCAGAAATGAC--TAAAAACTCCTATTGAGAACGTTTCTATTTTCGCGGCTTCTt
i caeRem4.Crem_Contig0  C 0 I 85
s caePb3.Scfld02_0       3480143 106 +  4147112 GTA-CTAAACTTTACTATTCGATG-----GGTTCCAGGTAGTTGTTGGTGTTGAGGTTTATTTTTATCTTTGAAG----TTTGTC---------TTGCTAGAA---AC--CAA----------------------TATTCcctctgattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I

a score=-1805.000000
s ce10.chrX              5194161 82 + 17718866 AGGTATATAATATATTTTAGTTTAACATTTATCAGGAAGTGGTAACAAAACTATAGATGAATCTAGCTTCTGGAATGTCTTA
s caePb3.Scfld02_0       3480249 20 +  4147112 ------------cattcctGTTTCAC---------------------------------------------GCAATG-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I
e caeRem4.Crem_Contig0   2014694 85 -  4500979 I

a score=-9938.000000
s ce10.chrX              5194243 206 + 17718866 AACGCGACCTCCCGTTTTTTAGGTACAGTTTTGCCAGTTTTT-----TGGGGCTTTCTTCATTATTGTTTTCAAAATTTCTTCTAAAAAATTTTTCTCAATTGTTATATGTACTATGTATATGCATCATTAAATTACATCTTGTTTTTTGGAACAAAGTATTTCCAAGCTCTTATCAACAATTTT-----TAATTATTGAAAAGGTACCCCTAATT
s caeRem4.Crem_Contig0   2014779 182 -  4500979 AATGCTACTTCCCTCAATTTACG----GCTATTTCTGTTTCTACAAATACAGTATTCTG-GTCATTGGTATCGGAGTATC--------AATCTTTCATACATTCctcattttcactcaaaatagATTTCAAGA---------------AAGATAAAAGTCATT------TGttaacttcattttttactgGAATTATTGAAAGTATTCTACAAATT
i caeRem4.Crem_Contig0  I 85 I 168
s caePb3.Scfld02_0       3480269  95 +  4147112 -AGGT--CTTTCTGCACTTTAT---------------TTTCT-----CACGGTA-------------------GAG------------------TCATAAAATCCAT----------------GATTagaaaa---------------cagcgaaaaatc-----------------tCAT---------GAATTAT----GGTTTTACTCAAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I

a score=-925.000000
s ce10.chrX              5194449 152 + 17718866 TTATGA-GATTCTTAAAAATCAAACAAACAGGTTCCCGAATTTCCTTTCGATTACTGCAACTTAATCAAGTTGTTTAAATT----TTTTGAAACTCGAAAAAAATCAGTTTGCTATGTGATCTGTTTTGATTCAAAGTCATGAGATACGTGGACCCA
s caePb3.Scfld02_0       3480364  98 +  4147112 TTATCACAATTCTCA-----------------------------CATTCGAATACT-CAACTCTTTC-----GTTTGAATTGAGGTTTTGAAGTACCA-------CAGTTT----TACGATTTA--TCAAATCGAAGACCCT-----------CCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I
e caeRem4.Crem_Contig0   2014961 168 -  4500979 I

a score=-3295.000000
s ce10.chrX              5194601 78 + 17718866 -TGACGAAATTTGATC----TATGAATTGACATTTCTAGAAAATACTAGGAAATACCTCCACTTTATTTCTAGATT--TTTCTTG---
s caeRem4.Crem_Contig0   2015129 80 -  4500979 -TGACAGGTTTTGATTACTTCCTCAATTATC-------AGTTGTGTTTCTTCaagaattgtgtttttttccgttacagttttttctta
i caeRem4.Crem_Contig0  I 168 I 58
s caePb3.Scfld02_0       3480462 79 +  4147112 TTTCcaaattctattcatttcatGAGTTGTA------GAAAGGTACTTGTGAGTTGATCAACTAGTTTTCTATAATAATCTATCG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I

a score=-217.000000
s ce10.chrX              5194679 33 + 17718866 TTTAACATTCTGAAAATTAACAGTAACTGTCAG
s caePb3.Scfld02_0       3480541 30 +  4147112 TTTCCAATCAtggaatt---cgataaatctagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7753391 391 - 33334924 I
e caeRem4.Crem_Contig0   2015209 58 -  4500979 I

a score=-505.000000
s ce10.chrX              5194712 26 + 17718866 CGTTGCGTTTCTCGAAAAATTCTTAG
s caeSp111.Scaffold629   7753782 21 - 33334924 CATTGTGTTTTGC-----ACTCCGTA
i caeSp111.Scaffold629  I 391 C 0
s caePb3.Scfld02_0       3480571 18 +  4147112 ctttgctcttt--------tttttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeRem4.Crem_Contig0   2015209 58 -  4500979 I

a score=15788.000000
s ce10.chrX              5194738 211 + 17718866 -TATTTTCCGGAAAAAAGTGAAA--AGAAGATAG--TTACAAAAATAAATACAAACCGGATG-AAAAGATCGGCGAAAAAATCGCAATATATTCGTAATAATAGATGATGGCATCTCGGCTCCT--GCTCTAGGGC-----CAGTCCATGAGT----CGCACAGCTAAGTGATTCGAAATTTTTCAAATAATTTCCTTACGGTTTTTTAAAATTCATTCTTT-------------------CTTTCT
s caeRem4.Crem_Contig0   2015267 194 -  4500979 TCTGTTCTataaaagaatttgaa--aac--attggtCTTCATAAATAGTGTCAAGccggaag-aaaaaattggaaaatagagGGCAAGGCACCCGTAATAATGGATGATAGCACCCTCGCCGCA--ACTCTCGGCACATCCCATTTCATTAGA----CAC-------ATTGCTCAACAAACTTCCTAATG---TTCGTGTG-------AAACGACATTCTTT-------------------------
i caeRem4.Crem_Contig0  I 58 C 0
s caeSp111.Scaffold629   7753803 212 - 33334924 -GATTTTCTCGAAGGAATTCGAA--AGC---TTG--ATTCATAAATAGTGACAAGCaggaaggaaaaaattcgaagatCGACGACGCTGCACTCGTAATAATGGATGATAGCACCTTGCTCCCGGCGCTCTTGGCACACTGCGTTTCATGAGT----TGT-------AGTGCCGCGAAAATATCTTAATG---TTCGTGag-------aaatctcatttttgaagtaGATTTGTTTTATCT------
i caeSp111.Scaffold629  C 0 I 217
s caePb3.Scfld02_0       3480589 169 +  4147112 -ctgtttctggaAGGAATTTGAAGCAGC---TTG--CATCATAAATAGTGACAAGccggaagaaaaagaatggaagatcGACGAGATCGCACTCGTAATAATGGATGATAGCACTTTGCCCGAAG-ACTCCTGGCA-----CTTTTCATGAGTTGTGTGT-------AGTGATCCAGAAATATTTCAA-----------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I

a score=-19251.000000
s ce10.chrX              5194949 398 + 17718866 GAGCCATACAAGTTTTATTTGGAAATATCACTTTGTTAGTTTTTTTTCGATCACATTTTATGCATGTTCTTGGAAATTAATATTTATTTGAAAGTGGCTAACTATCCAAATAAA-------ACTTTTCTAGTATTTATCAAAGTCGTCAATCCAAAAAAAACTGTTTATTCATGTTCGATTGTCTAATTGCACTTTAAATAATGATA---CTGAAATTTTGTATGGGTTCGAGCATTGCTATATGTTCTTACAGTTTTAATGTTTGAGTGCAATTGGCTTAAAGAATCGTAAAAAAATAACTTTTTTTTGGACGACTTCCAAAAATTATAATATGTAGGTGCAAACTGAGGTTTCATTACATACTGCCCATTCAAAACTTCAAAACAGTATTCTTAAAAAGTTTACTA
s caeRem4.Crem_Contig0   2015461 220 -  4500979 -------------------------------------AAATATT--------------------------------TCTAGATT--CTAGAAAG-----AACTGTAACGATAAA-------ACGTCATT--CTCTTCT-------GTGACTC---------ATGTCTATTTCTGCCATATTGTCT-----TGTTTTTTCCTAGGCAAAGTCTATAG---AATATGACATCGACG-------CAAATCC----AGATATATC----------------CGCGATacatc------------cattttttt---------ttgaaatttccgcTA-----------------GTCTCCTGCACTTTTG-ccattgaaaattgttga----tctTCCTGACA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3480758 255 +  4147112 -------------------TGGGAACttccattcttcaattcttttgtTCTCACAGTCAAT-CATACT-------GTCAAGATT--AGATACAG------ATTGTAGATATAGATAGAAACACGTCACT--TTTTTAT------CGTGACTC---------ATG--CAATAAAGATGTATTAGCT-------CTTTTATGTATGAAA---CTGTAGATAAGGATAAGATCAAAC-------TCAATTCTTTAGGTTTTAGT----------------CTTGACGTAtcat------tttgcactttttttcctg--tctcAAAATCTCTG--------------------ATCTCGTTCTCTTTT--CCGTT------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e cb4.chrX              10537186 1181 + 21540570 I
e caeSp111.Scaffold629   7754015 217 - 33334924 I

a score=1584.000000
s ce10.chrX              5195347 24 + 17718866 TGATATTCGTTC-GTTTTACAAAAA
s cb4.chrX              10538367 24 + 21540570 TGACA-TCGATACCTTTTACTAtac
i cb4.chrX              I 1181 C 0
s caeRem4.Crem_Contig0   2015681 18 -  4500979 ------TCGATA-CTTTTACTATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3481013 17 +  4147112 TGACA-TTGATA-CTTTTA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   335387 559 +   823664 I
e caeSp111.Scaffold629   7754015 217 - 33334924 I

a score=1465.000000
s ce10.chrX              5195371 6 + 17718866 AATGTT
s cb4.chrX              10538391 6 + 21540570 attctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2015699 6 -  4500979 ATTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   335946 6 +   823664 AATATT
i caeJap4.Scaffold18194 I 559 C 0
e caePb3.Scfld02_0       3481030 0 +  4147112 C
e caeSp111.Scaffold629   7754015 217 - 33334924 I

a score=89380.000000
s ce10.chrX              5195377 214 + 17718866 TTATAT--AATATTCTCTAGC---TT----AACAACTCATTTTG--CAAT----------CCGTTATGTCTA--------------------------TCCCCGCTTGCTCCTAGCTCGTGTAAATTTATGAGGTGCCCATCAATTTCG----GGGGACTTCTTCTAACTGATCATCGAACTAATCAT--GAGAGATAGATTGAATATTCGGCGGCGGGGC---CA-TGC-GGCAACGCGAGAAAC--------CTGACAAAACAACTGTGAGGTACG-------------------AG
s cb4.chrX              10538397 234 + 21540570 --------ttttctaatgtGC---TCTCGTCGCAACTCGAATCG--CATT------GTCTCCGTTATGTCTG--TCGTttgcttcttctccttctttttcttcttctcatatcttctcttGTAAATTTATGAGGTACTCATCAATTGCACCTCTG---------ACTGATGATCATCGAACTAATCATGCGAGAGATAGATTGAATATTCGTTGGCGGTCT---CT-------CCTCTTGAGCAAC--------CTGACAAAACAACTGTGAGGTACTAC-----------------GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2015705 210 -  4500979 --------TTTC------TGC---TC----AACAACtcatctca--aatttttgcaatctCCGTTATGTCTG--------------------------CCTCCTTCTCATCGCAGCTCGTGTAAATTTATGAGGTACCCATCAATTTCG----GG---------CTTGCTGATCAACAAACTTATCAT--GAGAGATAGATTGAATATTCGTCGGGAGGCC---CCATGCCGACGACAGGGGCAAC--------CTGACAAAACAACTGTGAGGTACGACTTG--------------GG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7754232 252 - 33334924 TTATAC--ATTCTTTTTGTGC---TC----AACAACTCATATCTCTCATT-TTGCTGTCTCCAGGATGTCtg--tcgttttcttctccttc-------tgccccccccccctcttcTCGTGTAAATTTATGAGGTACCCATCAGTTTTG----AG---------CTTGCTGATCAACGAACTAATCAT--GAGAGATAGATTGAATATTC----GGCGGCCCCGCC-TGTTGACAACAAGGGCAAC--------CTGACAAAACAACTGTGAGGTACTTCCTCGCTCTTTTCCCAAAGG
i caeSp111.Scaffold629  I 217 C 0
s caePb3.Scfld02_0       3481030 227 +  4147112 TTATAC--Attctttttgtgc---tc----tacaactCATCCAAACAATT-TTGCTGTCTCCGTTATGTCTGCCTCGTTTT--------------------------CCTCTCGGCTCGTGTAAATTTATGAGGTACCCATCAATTTCG----GG---------CTTGCTGATCATCGAACTAATCAT--GAGAGATAGATTGAATATTCGTCGGGCGGCC---TC-TGT------CAGGGGCAAC--------CTGACAAAACAACTGTGAGGTACGACGTC---CTCCTCTAAAGAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   335952 233 +   823664 CTATATTAATTCCTTCTCAACTTATC----AACATCTCATTTCA--CTGC------ATGTCAACTCTGCCAC--CCGTTTTCTTCCC-----------CTCGTTTCACCCATTTGCTGGTGTAAATTTATGAGGGACCCATCAATTTCG-----G---------TTCGCTGATCAACGAGCTAATCAT--GAGAGATAGACTGAATATTC--CTGTTGTCT---CG-GACATACAACACGCCTATCCAGCCTGACTGACAAAACAACTGTGAAGTACGAG-------------------
i caeJap4.Scaffold18194 C 0 I 20

a score=5544.000000
s ce10.chrX              5195591 35 + 17718866 CGGTTTTAG-TCG-------AAGACGGAA--------------AGAAGA------------GATCGGTT
s cb4.chrX              10538631 49 + 21540570 TG-----AGCTCAAGCG---CGgaagcaagaagaaga------agaagat------cagCGGCACGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2015915 62 -  4500979 TG--CCTAG-TCAAGCT---TCGacggaaaaagaagatcaGTGAGACGAC-GGCGGCGGCGGCACGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7754484 52 - 33334924 CG--CCTAG-TCAAGCCCCGTCGACGGAA--------------AGAAGATCAGCGGCAGCGGCTCGGTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3481257 51 +  4147112 TG--CCTAG-TCAAGCATC-CCGACGGAA--------------AGAAGATCAGCGGCAGCGGCTCGGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   336185 20 +   823664 I

a score=248979.000000
s ce10.chrX              5195626 694 + 17718866  
s cb4.chrX              10538680 712 + 21540570  
i cb4.chrX              C 0 I 1218
s caeRem4.Crem_Contig0   2015977 690 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7754536 688 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3481308 676 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   336205 798 +   823664  
i caeJap4.Scaffold18194 I 20 C 0

a score=6006.000000
s ce10.chrX              5196320 11 + 17718866 GAATTAGCTGG
s caeRem4.Crem_Contig0   2016667 11 -  4500979 ATATTAGCTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755224 11 - 33334924 AGATTAATTGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3481984 11 +  4147112 AAATTAGTTGG
i caePb3.Scfld02_0      C 0 I 370
s caeJap4.Scaffold18194   337003 11 +   823664 AAATCAGCTGG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10539392 1218 + 21540570 I

a score=1704.000000
s ce10.chrX              5196331 4 + 17718866 GTGG
s caeRem4.Crem_Contig0   2016678 4 -  4500979 Gagg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755235 4 - 33334924 GTGG
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   337014 4 +   823664 GTGG
i caeJap4.Scaffold18194 C 0 I 96
e caePb3.Scfld02_0       3481995 370 +  4147112 I
e cb4.chrX              10539392 1218 + 21540570 I

a score=-1169.000000
s ce10.chrX              5196335 5 + 17718866 GTCGA-
s caeRem4.Crem_Contig0   2016682 5 -  4500979 ttcaa-
i caeRem4.Crem_Contig0  C 0 I 229
s caeSp111.Scaffold629   7755239 6 - 33334924 TCTTGT
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3481995 370 +  4147112 I
e caeJap4.Scaffold18194   337018 96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I

a score=1039.000000
s ce10.chrX              5196340 62 + 17718866 TTTCTT--TGTGAACTTGTGAACAACT-AAAAGTTCACGCTTTAAGTGACAGCTTTGAACTTAAC
s caeSp111.Scaffold629   7755245 65 - 33334924 TTTCTTAATTCGAATTGGTCAGCAATTCAAAACCTCTAGAATACCGTGATAGTCTGGGAATTAAC
i caeSp111.Scaffold629  C 0 I 129
e caePb3.Scfld02_0       3481995 370 +  4147112 I
e caeJap4.Scaffold18194   337018 96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I
e caeRem4.Crem_Contig0   2016687 229 -  4500979 I

a score=0.000000
s ce10.chrX              5196402 1087 + 17718866  
e caePb3.Scfld02_0       3481995  370 +  4147112 I
e caeJap4.Scaffold18194   337018   96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I
e caeSp111.Scaffold629   7755310  129 - 33334924 I
e caeRem4.Crem_Contig0   2016687  229 -  4500979 I

a score=219.000000
s ce10.chrX              5197489 29 + 17718866 CATTGTTTGTGCCAACTGG----CAAAAGATGC
s caeRem4.Crem_Contig0   2016916 33 -  4500979 CATTCTTGGTGCTATCTTATCTTCTAGACCTGT
i caeRem4.Crem_Contig0  I 229 C 0
e caePb3.Scfld02_0       3481995 370 +  4147112 I
e caeJap4.Scaffold18194   337018 96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I
e caeSp111.Scaffold629   7755310 129 - 33334924 I

a score=846.000000
s ce10.chrX              5197518 3 + 17718866 TGT
s caeRem4.Crem_Contig0   2016949 3 -  4500979 TGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755439 3 - 33334924 tgt
i caeSp111.Scaffold629  I 129 C 0
e caePb3.Scfld02_0       3481995 370 +  4147112 I
e caeJap4.Scaffold18194   337018 96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I

a score=2108.000000
s ce10.chrX              5197521 31 + 17718866 TAGGTGCAGGTTCTTCC-----TGGAAGAATCTTAG
s caeRem4.Crem_Contig0   2016952 35 -  4500979 TGAGTTCAAATTCGTTCTCTCATGGAACTCTTAT-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755442 34 - 33334924 tagGTACAAATTCTTGTCTGGGTGGGACCACTT--G
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3482365 31 +  4147112 TGGGTACAAATTCTTGTC----TGGGACCATTTC-G
i caePb3.Scfld02_0      I 370 C 0
e caeJap4.Scaffold18194   337018 96 +   823664 I
e cb4.chrX              10539392 1218 + 21540570 I

a score=2155.000000
s ce10.chrX              5197552 22 + 17718866 ACAGATGGTAAACACG-----AA----GGAA
s caeRem4.Crem_Contig0   2016987 22 -  4500979 ATCTGTGGCAAACGAG-----AAAACA----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755476 18 - 33334924 ATATGTGATAaacatg-----aa--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3482396 18 +  4147112 ATATGTgataaacatg-----aa--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   337114 23 +   823664 ACATACTGAAAACacggcaaaaa--------
i caeJap4.Scaffold18194 I 96 C 0
e cb4.chrX              10539392 1218 + 21540570 I

a score=504950.000000
s ce10.chrX              5197574 1973 + 17718866  
s cb4.chrX              10540610 1917 + 21540570  
i cb4.chrX              I 1218 C 0
s caeRem4.Crem_Contig0   2017009 2031 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7755494 1999 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3482414 2063 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   337137 2097 +   823664  
i caeJap4.Scaffold18194 C 0 I 41

a score=-8620.000000
s ce10.chrX              5199547 41 + 17718866 TGGGAACTTCAAACGTGTATGGTGCGCGTTCAAATTCCTCG
s cb4.chrX              10542527  3 + 21540570 CGG--------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2019040 16 -  4500979 CGGGG-------------TCGGTG-----TCAAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7757493 21 - 33334924 TGGGA-------------ATGGAAACAATTCAAC-------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3484477 21 +  4147112 TGGAG-------------TTATTGCAACTCCATC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   339234 41 +   823664 I

a score=-3046.000000
s ce10.chrX              5199588 18 + 17718866 CAATGTATTTC---TTCGAAT
s cb4.chrX              10542530  7 + 21540570 --------------CTCGGGC
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   2019056 19 -  4500979 CGGTG--GTTCCACATCCGGT
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold629   7757514 16 - 33334924 CAATT--GTTC---TTCCAAT
i caeSp111.Scaffold629  C 0 I 15
s caePb3.Scfld02_0       3484498 16 +  4147112 CAATG--GGAC---ATCGAAT
i caePb3.Scfld02_0      C 0 I 27
s caeJap4.Scaffold18194   339275 18 +   823664 CGAGAGGTCAC---TTCCAGT
i caeJap4.Scaffold18194 I 41 C 0

a score=-8359.000000
s ce10.chrX              5199606 27 + 17718866 GAAAATTCCATGTCATCAACTTCAGTG----------------
s cb4.chrX              10542548  1 + 21540570 --------------------------G----------------
i cb4.chrX              I 11 I 18
s caeRem4.Crem_Contig0   2019093 27 -  4500979 GAGAATTCAACTTTGTCTCATGCCATG----------------
i caeRem4.Crem_Contig0  I 18 I 21
s caeSp111.Scaffold629   7757545 22 - 33334924 ATGACTCCCACTAAACCTGCTG---------------------
i caeSp111.Scaffold629  I 15 C 0
s caeJap4.Scaffold18194   339293 42 +   823664 -GAAATTTCTTGCGGCTCGATGCCATCTATGTCCCAACAATCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3484514 27 +  4147112 I

a score=10113.000000
s ce10.chrX              5199633 90 + 17718866 GAGGGCCCACCTGCCAAGAAAAAGAGGATATCCAAGCCAAAGAAAGCACTACAGTCC---------AGATTGGAAAAACAGACTACTGTAAGTTATTTC-
s cb4.chrX              10542567 76 + 21540570 -----GCCtccagagaagaagaagagacctTCAAGACCACGCAAACCTGCTCATCC---------------ACGTGGCCAa---aaggttagttttttt-
i cb4.chrX              I 18 I 47
s caeRem4.Crem_Contig0   2019141 81 -  4500979 GAAGGACCTCCTGCCAAGAAGAAACGTGTATCCAGACCAAGAAAACCAGCCCAGCC---------------AAAAGTTCAG---AAGGTACGTTTCTTT-
i caeRem4.Crem_Contig0  I 21 I 33
s caeSp111.Scaffold629   7757567 81 - 33334924 -ATGGGCCTCCGccgaaaagaaagagagtcTCGAAACCAAAGAAGCAGCAGCAACAA---------AACATGGAGAACcaa---actgtaattt------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3484541 75 +  4147112 GAAGGACCCCCACCCAAAAGAAAGAGGATTGTGAAACCGAAAAAGCCTCA---------------------GGAGAAACAA---ACAGTAAGCTATTAT-
i caePb3.Scfld02_0      I 27 I 58
s caeJap4.Scaffold18194   339335 97 +   823664 GAAGGTCCTCCGCCAAAGAAGAAGCGTGTTGTCAAGCCAAAGAAatctcaacaacaacaacaacagaaTCAGGAGAAACAA---GAGGTAAAGACATATT
i caeJap4.Scaffold18194 C 0 C 0

a score=-538.000000
s ce10.chrX              5199723 18 + 17718866 GAAAACCCCCGAATCTCA
s caeJap4.Scaffold18194   339432 18 +   823664 Atcaatcttttttttgcc
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3484616 58 +  4147112 I
e cb4.chrX              10542643 47 + 21540570 I
e caeSp111.Scaffold629   7757648  0 - 33334924 C
e caeRem4.Crem_Contig0   2019222 33 -  4500979 I

a score=19639.000000
s ce10.chrX              5199741 34 + 17718866 TTAATTTTTA----AAGTGTGTAGTTTGTTACTCTGTG
s cb4.chrX              10542690 35 + 21540570 TTGGTTTCTA---TTTGAGTGTAGTGTGATATTTTGCG
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   2019255 34 -  4500979 ttgagTTCTA----GTGTGTGTAGTTTGAGATTTTGTG
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold629   7757648 30 - 33334924 ----ttttta----tagtGTGTAGTTTGATATTCTGTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3484674 38 +  4147112 tcaattttgagttttagtgTGTAGTTTGATAATGTGTG
i caePb3.Scfld02_0      I 58 C 0
s caeJap4.Scaffold18194   339450 32 +   823664 ttgaGTTTTA------GTGTGTAGTTTGATTGTTTGGG
i caeJap4.Scaffold18194 C 0 I 29

a score=6039.000000
s ce10.chrX              5199775 49 + 17718866 TTATCACCTCATCTCAATTTCTCAATTGCATCAAAATATATATCCCACA
s cb4.chrX              10542725 33 + 21540570 TTATCACCCCA--TCATCTTCTTATCACC---------AGAAGC-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2019289 38 -  4500979 TTATCATCCCA--TCATCTTCTTATCAGT---------ATCTTCTCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7757678 31 - 33334924 TTATCATCCCA--TCATCTTAT----------------cccatctcaaa
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3484712 39 +  4147112 TTATCATCTCA--TCATCTTCTTATCAGT--------ATCCATCTCTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   339482 29 +   823664 I

a score=73840.000000
s ce10.chrX              5199824 470 + 17718866  
s cb4.chrX              10542758 499 + 21540570  
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2019327 527 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   7757709 529 - 33334924  
i caeSp111.Scaffold629  C 0 I 2
s caePb3.Scfld02_0       3484751 523 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   339511 314 +   823664  
i caeJap4.Scaffold18194 I 29 C 0

a score=823.000000
s ce10.chrX              5200294 61 + 17718866 -----GAAAAGTGAAAAACACAGACATGTGTGGGAAAACAGATATAAAAGTAATAG--CTGTTTGGCT
s caeRem4.Crem_Contig0   2019857 53 -  4500979 -----GGAATGTG-GGAATGAAGACATG--------AAAGAATG-GAAACTGATACTCTACTCTTACT
i caeRem4.Crem_Contig0  I 3 I 14
s caeSp111.Scaffold629   7758240 53 - 33334924 -----GGAATGTG-GGAATAGAGAcatg--------aaagaata-aaaagtgatACTTTCGTTTCAGT
i caeSp111.Scaffold629  I 2 I 2
s caePb3.Scfld02_0       3485276 52 +  4147112 -----GGAATGTG-GGAATGAAGACATG--------AAAGAATGCAAAAGTGATAC--TCATCCTTAT
i caePb3.Scfld02_0      I 2 I 2
s caeJap4.Scaffold18194   339825 26 +   823664 ATTAAAATATTTG-GGAAGATAGATTT-----------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10543257 27 + 21540570 I

a score=-7049.000000
s ce10.chrX              5200355 24 + 17718866 TTTTTTCCAAATAGA-----GTATTACAG
s cb4.chrX              10543284 16 + 21540570 TTCTTT-------GC------CAGTAGAG
i cb4.chrX              I 27 I 91
s caeRem4.Crem_Contig0   2019924 22 -  4500979 ctagtt-------gaaaaatgtattaaat
i caeRem4.Crem_Contig0  I 14 I 8
s caeSp111.Scaffold629   7758295 28 - 33334924 CTACTTCTAAGAAGACAAAGGGGA-AGAT
i caeSp111.Scaffold629  I 2 I 12
s caePb3.Scfld02_0       3485330 29 +  4147112 TTACTGCTCGGCGGAAAGAGAGactaaag
i caePb3.Scfld02_0      I 2 I 16
s caeJap4.Scaffold18194   339851 29 +   823664 TTGCTTCCAGGAAGCAAACAATGCTGTAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-14755.000000
s ce10.chrX              5200379 131 + 17718866 ATCACAGTTG--------CACCTCAA------AACAGTTTAACCATTCCTGCGGACAGCTGTAACCAAGGTTCGA------------CCACCACCAATGCAATCAGAACCCTCGTCAATAATACCAATCTTATGGGAGGAAGCAACACGTAAT-ATAA
s caeRem4.Crem_Contig0   2019954 127 -  4500979 aatgctgTCA--------AACCGCAA------CTC------ATCATTCCTAATGC---ATCCAACCAGATGTCCAATTTGGCAC---CAGTTAGCAATGATAACAATACTCCAACTGACATTGATGTTCTTCTTGGAAGAAGCAAC-AGCCAGC----
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   7758335 138 - 33334924 GATATTTTTTACAGAATCAACCACAA------AAT------GTCATGTCAATGGG---TTCGAACCAAGTTACTAACATGCTCCCGACCTCTGAAAATGGTACAACCATTTCTACAGATATCGACGTTCTTCTTGGAAGAAATACCAAGTTAG-----
i caeSp111.Scaffold629  I 12 C 0
s caePb3.Scfld02_0       3485375 143 +  4147112 aatgtGTTTT-CAGACTCCACCACAAGCACAGAAT------GTCATTACTATCAA---CTCAAATCAGTCACCGAACATGGCCAGTTCGAATGGAAACAACACAGTTATTTCCACAGATTATGACACTCTTCTTGGAAGAAACACCAAGTTGG-----
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18194   339880 120 +   823664 -ACACTATTG-------TCACTACAACCATG-AAC------AACATGAT---------CTGCAACAGCTCTCAAAGCATTATTACTTCTTCAAGCATGGAAAATAACAATGATTCCAACTCTGGAAATATCAGTTGTGGGCTCA--------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10543300  91 + 21540570 I

a score=-3569.000000
s ce10.chrX              5200510 429 + 17718866  
s cb4.chrX              10543391 597 + 21540570  
i cb4.chrX              I 91 C 0
s caeRem4.Crem_Contig0   2020081 444 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold629   7758473 435 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3485518 443 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   340000 411 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1326.000000
s ce10.chrX              5200939 3 + 17718866 GAA
s caeSp111.Scaffold629   7758908 3 - 33334924 GAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3485961 3 +  4147112 gaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   340411 3 +   823664 gaa
i caeJap4.Scaffold18194 C 0 I 29
e cb4.chrX              10543988 0 + 21540570 C
e caeRem4.Crem_Contig0   2020525 39 -  4500979 I

a score=-4019.000000
s ce10.chrX              5200942 16 + 17718866 TG--------CTATTT--------CATTGTTA
s cb4.chrX              10543988 19 + 21540570 ----------GCATCC---CAGAAGATAATTA
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold629   7758911 24 - 33334924 AA--------TCGTCCATACTAGATCCAAATA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3485964 24 +  4147112 aaaacgaattccgttt--------ttcaattg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   340414 29 +   823664 I
e caeRem4.Crem_Contig0   2020525 39 -  4500979 I

a score=-796.000000
s ce10.chrX              5200958 12 + 17718866 GGTTCTTACTTT
s caeSp111.Scaffold629   7758935  9 - 33334924 AAttcttta---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3485988 10 +  4147112 agaTCTTGGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   340414 29 +   823664 I
e cb4.chrX              10544007 18 + 21540570 I
e caeRem4.Crem_Contig0   2020525 39 -  4500979 I

a score=0.000000
s ce10.chrX              5200970 1 + 17718866 C
e caePb3.Scfld02_0       3485998 0 +  4147112 C
e caeJap4.Scaffold18194   340414 29 +   823664 I
e cb4.chrX              10544007 18 + 21540570 I
e caeSp111.Scaffold629   7758944 0 - 33334924 C
e caeRem4.Crem_Contig0   2020525 39 -  4500979 I

a score=6604.000000
s ce10.chrX              5200971 129 + 17718866 ATTTTCAGAGCAAGTAATTGAAA---CTCCA------GTG------------------AACCAAAGCATCTCAAACATAT------------TTAATAT-----CTCTACGGCAAACACA----ATGCAGCAGCAACAACAACAGAATGTTCAACAACAGC------CTCAGCAGCAACCG-AA
s cb4.chrX              10544025 143 + 21540570 ATTTCCAGAGCAGCTCCTTGGCA---ATCAGAACAACATG------------------AACCAA---------CCAATGCCAAATATGTTCAATAACAT-----TCCAACTCCAGTTTCC----ATGCAGCAACAAATGCAGCAACCAATGCAACAGCAAATCTTTACTCCAAATC-ATCA-AC
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   2020564 123 -  4500979 aatttcagaacaaat-------g---ATCAG--TAACCCA------------------AACCAG---------GCAATGT------------ACACCAT-----CTCGACACCAACTACg----atgcaacaacaacaacaacaacagcaacaacaacacatggttcatccaaaccaaaca-at
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold629   7758944 125 - 33334924 -atttcagaacaacATCTTGGAGGAAAGCAG---AACATG------------------AATCAGAGCATCACTACAATGT------------TCAATGT-----GTCGACCCCATCGTCA----ATGCAACAACAGCAGCAACAAGGGATGACCCAATCCA----------------ATCAGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3485998 119 +  4147112 -ATTTCAGAACAAACACTCGGTG---CTCAA---AACATG------------------AACCAAAGTATTTCGACAATGT------------TCAACGT-----ATCCTCTTCAAACACC----ATG---CATCAGCAGCAACAAAATATGCAACAACAGA----------------ATCAAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   340443 153 +   823664 ATTTTCAGAACAAGTGATGGGCG---GCCGC---AACATGGATAGCAACCAACAAATCAGTCAGAACATTTCCAACATGT------------TCAATCCACCTGTTCAACAGCAATCCCAACCGATGCAACATCAACCGCAGATTCAACTCCAACAACAGC----------AGACACAGCA---
i caeJap4.Scaffold18194 I 29 I 94

a score=-8846.000000
s ce10.chrX              5201100 176 + 17718866 CTTCATTAACT---CATCGATGGCACAGAATGGGTATGCGGGAATGTATCCGTATC---CAGGCCCTAACGATTGTTCTAACT------TTTCTTATGG---TTTTAATCGCTTTTACCCGTATAACAATGGATGCTAGCCTGAAGTGTTTTAATTATTTTTTGTTTGTTTTAATAATG-GTTT-------TAACTTGT
s cb4.chrX              10544168 155 + 21540570 CCGTCCTAATT--GCATCCGC---AGAAACTGGGTGGGTCGGAATGTACCCGTCAC---CAGGGCCACCGGATGACTTTT------TCATTTACGATAA---ATATAATCAGTTCTATCCTAACCCcaa-----------gtacagtaaccaataCAC------------TTACTA----AACTGGAGTGATTTTGTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2020687 147 -  4500979 ctacatgaactcaacatTGGCTCAACAAAATGGGTACGCTGGAATGTATGACTATC---CGGGACCACCAGAGCATTTTTATCCTCATATCTGGGACAC---CTGGAATCAATTTTACCCT----------------------TATTAACCGTTTTA--------------TACTA----ATTTG------CCTCCTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7759069 155 - 33334924 CTTCATGAATG--GCA-CTGTGACACAAAAAGGGTATGATGGAACGTATGATGACTATACCGGTTCATTAGAGTATTTGAATC------ACTACCAGTC---ATGGAAC---TTCTATCCTTATAACTT-----------CTGAACTGACCTGTTTGC--------AATGTT-CTA--ACATTT-------Tcccttgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3486117 152 +  4147112 CTTCATGAA---------TGCTCCACAAAATGGGTACGCAGGAATGTATGATTACC---CAGGTCCAAATGATTACATGGACC---CTAACTACTATTCAGAATGGAACCAGTTTTATCCATA-----------------CTAAAGATAGTTGTTTGC--------TGTGTCACTAGTGCATCT-------TTTCTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   340596  94 +   823664 I

a score=-150366.000000
s ce10.chrX              5201276 444 + 17718866  
s cb4.chrX              10544323 227 + 21540570  
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   2020834 219 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold629   7759224 159 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3486269 139 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   340690 388 +   823664  
i caeJap4.Scaffold18194 I 94 C 0

a score=-2841.000000
s ce10.chrX              5201720 10 + 17718866 TTCTACGGTA
s caeRem4.Crem_Contig0   2021054  6 -  4500979 ----aTAGGA
i caeRem4.Crem_Contig0  I 1 I 1
s caeSp111.Scaffold629   7759383  4 - 33334924 ------TGGT
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0       3486408  4 +  4147112 ------GGGA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   341078  1 +   823664 ---------A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10544550 12 + 21540570 I

a score=393407.000000
s ce10.chrX              5201730 707 + 17718866  
s cb4.chrX              10544562 694 + 21540570  
i cb4.chrX              I 12 I 3
s caeRem4.Crem_Contig0   2021061 680 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold629   7759393 680 - 33334924  
i caeSp111.Scaffold629  I 6 I 6
s caePb3.Scfld02_0       3486418 700 +  4147112  
i caePb3.Scfld02_0      I 6 I 42
s caeJap4.Scaffold18194   341079 752 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7036.000000
s ce10.chrX              5202437 38 + 17718866 CATAG---TTTAAG----TTTTCCCGAGTTATCTTATCAATTTCA
s cb4.chrX              10545259 34 + 21540570 CGTGACATTCCGGAAAGGAGTTAtcga-----------aactctg
i cb4.chrX              I 3 I 4
s caeRem4.Crem_Contig0   2021747 31 -  4500979 CGTga---tttgaatcaaatttcctGA-----------AACAACA
i caeRem4.Crem_Contig0  I 6 I 1
s caeSp111.Scaffold629   7760079 21 - 33334924 CGTGA-------------GTTACTCGA-----------AATTCCA
i caeSp111.Scaffold629  I 6 I 10
s caeJap4.Scaffold18194   341831 32 +   823664 CGTGT---CGCAATCGCAAATCACTGTAT---------AATTTT-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3487118 42 +  4147112 I

a score=71415.000000
s ce10.chrX              5202475 90 + 17718866 ATTGCAGGATGGCAGAACAGCTCTCGTTATTGTTTCTTTGCTACATGACTATCGTACGACTCGAGAGCAGAACA---ACCGTGCCAAATCAAC
s cb4.chrX              10545297 93 + 21540570 tttgcaGGATGGTCGCACGGCACTAGTTATCGTTTCCCTCTTACATGATTACCGAACAACTCGCGAGCAGCAAACCCATCGAACTAGATCAGC
i cb4.chrX              I 4 I 91
s caeRem4.Crem_Contig0   2021779 90 -  4500979 TTTGCAGGATGGGAGAACTGCTCTTGTTATCGTGTCATTACTACATGACTATCGAACAACACGCGAGCAGAATA---ATCGTGTAAAAACGAC
i caeRem4.Crem_Contig0  I 1 I 15
s caeSp111.Scaffold629   7760110 90 - 33334924 TTTGCAGGATGGCCGTACTGCTCTTGTTATCGTATCGTTACTACATGACTATAGAACTACCCGCGAGCAGAACA---ACCGTGCCAAATCAAC
i caeSp111.Scaffold629  I 10 C 0
s caePb3.Scfld02_0       3487160 90 +  4147112 GTTACAGGATGGCCGAACTGCTCTCGTTATCGTTTCCTTGTTACATGATTATCGACAAACACGCGAGCAGAACA---ATCGTGCTAAAACGAG
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18194   341863 87 +   823664 ATTACAGGACGGCAGAACTGCCCTTGTTATAGTATCTTTGTTGCATGATTATCGGACTACTCGCGAGCAGAACA---ACCGAGCAAAGAC---
i caeJap4.Scaffold18194 C 0 C 0

a score=-1728.000000
s ce10.chrX              5202565 37 + 17718866 GACTGGCGAGCAGCCTGTTGTAGCTGATAGCACAGCA
s caeRem4.Crem_Contig0   2021884 37 -  4500979 GGCTGATGATAAGAATGCCGTTGTTGAAGTGGCAGCA
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   7760200 34 - 33334924 ---AAATGGAGAACCTAACAGTGttgaagataagaaa
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0       3487250 34 +  4147112 ---CAGCGAGGAACCGTCGGTAATTGAAGATAAGGTG
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   341950 31 +   823664 ---GACTGTTGAGTCGGCAGTTTCTGATAAGGCA---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10545390 91 + 21540570 I

a score=26142.000000
s ce10.chrX              5202602 148 + 17718866 GTGGAGGTTACAAAAAAGG---TAATATAACGTGACTATCTTTGCTTTTT-T-----TTTAAACTCTGTGCATTTTTTCAGAAAGCTCCAGCCAGAAAAAGGAATGCC---AATGGAACAACAAAAACAGCACCGAGCAAAAAGAC---------------------------------------TGCGCAGCAGAAAC---------------
s cb4.chrX              10545481 143 + 21540570 GAGGATGCTCCGAAAAAAG---TACAATAGAGAAATGGTTTTTGACCTTT-Cactaatttgaattttg----------cagaaaGCACCGGCTAGAAAACGTAACCCC---GCTGTATCAGGGAAACCAAATTCAAGTCGAAAACC---------------------------------------AGCacaaagaaaac---------------
i cb4.chrX              I 91 I 77
s caeRem4.Crem_Contig0   2021921 142 -  4500979 GCTCCAGCACCAAAGAAGG---TA-AACAAAAGAATAGTTTTTGATTCTT-CAATTCTTTGAACTTTG----------TAGAAAGCCGCTCCACGTAAAAGACCAGCA---GCTGGAACTGCAAAGTCTAATCAGAGTAAAAGACC---------------------------------------GTCACAGAAGAAAT---------------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold629   7760240 137 - 33334924 GAAGTTGTTGCCAAAAAGG---TAAAATAGc-----gatatttgattttt-caatt-tttgaactcta----------CAGAAAGCGCCGGCCAGAAAACGTACTAAT---AATGGAACTCCAAAATCAAATCAGAACAAAAAGTC---------------------------------------AGCCCAAGGAAAGC---------------
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_0       3487290 149 +  4147112 GAAGTTGTTGCAAAGAAGGTAATAAAATGacggaatgatttttgatctttacaatt-tttgaactcta----------cAGAAAGCACCAGCTAGAAAGAGAAACAGCGGAGGAGGAGCGGCAAGATCAAATCAGAATAAGAAAGT---------------------------------------GCCACTTGTCAAGC---------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194   341981 192 +   823664 GTGGAAGTTACGACGAAGG---TAACGTTGTTCAATGATCttctattttt-gatt--ttcatgatttt----------tagaAAGCACCggcaagaaaaagaaacaat---aataG---TTCAAAAGTTGTGCAGaacaaaaaagcagctcaacagcagcagcaacaacaacaaccacaacaacaaatacaacaacagcagccgcagcaaccgc
i caeJap4.Scaffold18194 C 0 C 0

a score=-5507.000000
s ce10.chrX              5202750 101 + 17718866 AGGCTGTTGATAACGATGTGATTCAGATTATCTCTTCAACGAATGAACAAAAAATCCCAGTTGAACAATCTCAGCAACAAAATCAACAGCAAAATTCGC--AA
s caeRem4.Crem_Contig0   2022075  89 -  4500979 CGGATGTTGAAATTG------TACAAGTTATCCCACCACCGACTATTGAGCAAAAACCAATTAT------TAATAAGGAGAtattccatcaaaaaacccAG--
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold629   7760377  90 - 33334924 AGATCGTTGAAATTGATGTTTCTCAAGTCATGTCACCACCAAATAGTCAACCGAT---TATGAT------TCAGCAACAGCCCCTGAAACAAGGAATGC----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3487439  93 +  4147112 AGGAAACTGAAACTGTCATGGTCCAAGTTATGGCAACATCAAACAACCATTCTGTAGCTATGCA------TAAACAAGGTGTTGTTCAACAAGCTTCAC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   342173  92 +   823664 agcaaccagATATTGAAGTGGTGCAGGTTATTccaccaccatctgaaccacagccacaacagcaaccacaacagcaacagcaacagccacaa-----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10545624  77 + 21540570 I

a score=248645.000000
s ce10.chrX              5202851 723 + 17718866  
s cb4.chrX              10545701 730 + 21540570  
i cb4.chrX              I 77 C 0
s caeRem4.Crem_Contig0   2022164 724 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7760467 747 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3487532 813 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   342265 760 +   823664  
i caeJap4.Scaffold18194 C 0 I 28

a score=-5578.000000
s ce10.chrX              5203574 11 + 17718866 ATACATCTGCT
s cb4.chrX              10546431  5 + 21540570 CA------CAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2022888 11 -  4500979 CCGCTGATCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7761214 11 - 33334924 TGAATGCTGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3488345 11 +  4147112 ACAAACCACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   343025 28 +   823664 I

a score=68516.000000
s ce10.chrX              5203585 658 + 17718866  
s cb4.chrX              10546436 691 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2022899 698 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7761225 683 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3488356 700 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   343053 794 +   823664  
i caeJap4.Scaffold18194 I 28 I 34586

a score=26758.000000
s ce10.chrX              5204243 142 + 17718866 TCAAGTGT---C--GGCGAGAA--------GTCGAGATAATTGAGAGTAAGGGGAAAATGG--ATGTAAGAG-CACGGA-----CGATTAG--------AAGCGAGT---------TTATGCTTTTC--CTGCACACATTTA----CTAACATCATTTGGCAGGATGTGAAGATGTGGTAGTTCAA
s cb4.chrX              10547127 165 + 21540570 TCAAATGTCAAC--GACTACAACTACAAacgtcgagataattgagagtGAACA--AAGTGAGGATGTGAGAGCCGAAGG-----CGATTAGGAGGAGAAAAACATGT---------TTCTGCCTTTC--CG-CACTCACTCGAAAAACCCCAATTGCTGGCAAGAGGTGTAAACGTACTAGTCAAA
i cb4.chrX              C 0 I 1213
s caeRem4.Crem_Contig0   2023597 136 -  4500979 TCAAGTGT---C--GACTACAA--------GTCAAGATAATTGAGAGTGAACG--AAGTGA--ATGCCTGGTGCTTAGA-----CGATTAG--------AGCCGTGT---------TTCTGCCTTTCTTCA-CAACCACTTA--------CATCTTCTGGCA--GAGTGCGGATGTAGTAGTCGAG
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold629   7761908 135 - 33334924 TCAAGTGT---CGGGGCGACAA--------GTCGAGATAATTGAGAGTGAGAA--AAGTGC--ATACGAGAG-CTCGGA-----CGATTAA--------CGCcatgtttt------ttctccatttt--ct-ttcacaTCCA------------CTCTAGCAATACGT-AAAATGTAATGGTTGAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3489056 147 +  4147112 TCAAGTGT---C--GGCGACAA--------GTCAAGATAATTGGGAGGAAAGG--AAGGGT--GTACAAGAG-CACAGAAACGGCGATTAAGT------CACGACGTAttcctcgattttctttttt--ct-tcaccaTTCG------------TTTTGGATAGGCGTGAAGATGTAATAGTTGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I

a score=-3081.000000
s ce10.chrX              5204385 27 + 17718866 CGCTATAAAC-AGATAAAAGGT--------GTAGAG--
s caeRem4.Crem_Contig0   2023738 37 -  4500979 AGTCACCAAC-AAATAAAAACCCTACATACGGATAGAG
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold629   7762043 20 - 33334924 -------ATCAAAGtgtgaaa---------gaagag--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3489203 22 +  4147112 -------AGC-AATTGAGAAAGGT------GGAGAG--
i caePb3.Scfld02_0      C 0 I 32
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I

a score=467.000000
s ce10.chrX              5204412 5 + 17718866 AAAAT
s caeRem4.Crem_Contig0   2023775 5 -  4500979 CGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7762063 5 - 33334924 aaaat
i caeSp111.Scaffold629  C 0 I 909
e caePb3.Scfld02_0       3489225 32 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I

a score=339.000000
s ce10.chrX              5204417 14 + 17718866 TTGGATTGTCTTCA
s caeRem4.Crem_Contig0   2023780 14 -  4500979 GAGAATGCTCTTCa
i caeRem4.Crem_Contig0  C 0 I 874
e caePb3.Scfld02_0       3489225 32 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I
e caeSp111.Scaffold629   7762068 909 - 33334924 I

a score=0.000000
s ce10.chrX              5204431 36 + 17718866 GCTTTTCAGAAGTACGCTATAAAAAATGTCCTCAAT
e caePb3.Scfld02_0       3489225 32 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I
e caeSp111.Scaffold629   7762068 909 - 33334924 I
e caeRem4.Crem_Contig0   2023794 874 -  4500979 I

a score=1693.000000
s ce10.chrX              5204467 82 + 17718866 AATTGGT---TGGAAACATGGAAAATTGAAAAACGTTTA--AAAACAAAATTAAAATAGCGTAAATACCGTCCAAAACGGTCCCAAA
s caePb3.Scfld02_0       3489257 87 +  4147112 AGTTGGTTCGTGCAAGAAAGCCAAATGGGAAAACTTATGGTAAAGCTAAATTGACATAGCctaaaaattatagaaaagtGTATCGAA
i caePb3.Scfld02_0      I 32 I 1171
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I
e caeSp111.Scaffold629   7762068 909 - 33334924 I
e caeRem4.Crem_Contig0   2023794 874 -  4500979 I

a score=0.000000
s ce10.chrX              5204549 1375 + 17718866  
e caePb3.Scfld02_0       3489344 1171 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I
e caeSp111.Scaffold629   7762068  909 - 33334924 I
e caeRem4.Crem_Contig0   2023794  874 -  4500979 I

a score=1307.000000
s ce10.chrX              5205924 50 + 17718866 CCGCTGAAGCGATTGCTCTGGAACGTCAGAGAGCTGAAGAAGCAGTTATG
s caeRem4.Crem_Contig0   2024668 50 -  4500979 CCGCTGCTGCTGCTGAAATTGAACGTCAACGTGCTCAATATGCTGCGATG
i caeRem4.Crem_Contig0  I 874 C 0
e caePb3.Scfld02_0       3489344 1171 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I
e caeSp111.Scaffold629   7762068 909 - 33334924 I

a score=300.000000
s ce10.chrX              5205974 1 + 17718866 G
s caeRem4.Crem_Contig0   2024718 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold629   7762977 1 - 33334924 G
i caeSp111.Scaffold629  I 909 C 0
e caePb3.Scfld02_0       3489344 1171 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I

a score=207.000000
s ce10.chrX              5205975 1 + 17718866 C
s caeRem4.Crem_Contig0   2024721 1 -  4500979 T
i caeRem4.Crem_Contig0  I 2 I 8
s caeSp111.Scaffold629   7762978 1 - 33334924 C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3490515 1 +  4147112 C
i caePb3.Scfld02_0      I 1171 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10547292 1213 + 21540570 I

a score=29752.000000
s ce10.chrX              5205976 85 + 17718866 ----------AACAATGGATGAGGA----TGACGATGGGCTCAATGAGTTTGGACGGCCAAGAAATCCGCCAAGAACACCACCAGAGCCAGCTCCAGAA
s cb4.chrX              10548505 88 + 21540570 ----------AATAATGAA-CCCAATTGTGGATGACGGTCTCAATCACTATGGGCTTCCAAGAAAAGGACCGAAAACGCCAGAAGGGACGCCACCTGAA
i cb4.chrX              I 1213 I 36
s caeRem4.Crem_Contig0   2024730 84 -  4500979 ----------gatgatgaa-gaaga----agacgatggtCTCAATGAGTTCGGTCTTCCAAGAAAGCCGCCACAAACTCCACCTGGGCCGGCTCCAGAC
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold629   7762979 94 - 33334924 TGCAATGGAAGATGATGGA-AATGA----AAGTGACGGTCTCAATGAATTCGGATTGCCGAGAAACCCGCCGAAAACTCCACCAGGCTCGCCACCAGCA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3490516 94 +  4147112 AATGATGGAAGATGACGGT-GAGGA----AAGTGATGGTCTGAATGAGTTCGGTTTGCCACGAAACCCGCCAAGAACGCCTCCAGGACCTCCACCAGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I

a score=-911.000000
s ce10.chrX              5206061 42 + 17718866 GGCCAAC---CA---ACTTGTGAGTCTATTGGTTTTGTTAA------TGAAGAG
s caeRem4.Crem_Contig0   2024814 42 -  4500979 GATCAGC---CA---GGACCAGGTTTGATCCCTTTTCCTGA------AGACGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7763073 54 - 33334924 AATCAACCGTCAATTGAGGACGACTACCGTCGTTTTGCTGCTCCACAACAACAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3490610 45 +  4147112 GATCAAC---CAACCGCAAGcggatttcttcattttcctgc------AGAGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548593 36 + 21540570 I

a score=13217.000000
s ce10.chrX              5206103 24 + 17718866 TTCGACGATGTCTCGGATGATGGC
s cb4.chrX              10548629 24 + 21540570 TTCGATGATGTTTCAGATGATAGC
i cb4.chrX              I 36 I 2588
s caeRem4.Crem_Contig0   2024856 24 -  4500979 ATTGATGATGTTTCCGATGATGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7763127 24 - 33334924 TTGGAAAATGTGTCGGATGATGGA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3490655 24 +  4147112 TTGGACGATGTTTCGGACGATGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I

a score=1629.000000
s ce10.chrX              5206127 28 + 17718866 GA---GATTC--CTGGAAGAAAACGAGTAAGTT
s caeRem4.Crem_Contig0   2024880 28 -  4500979 GA---AGTTG--ATGGAAGACCAAGGGTaagtc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7763151 31 - 33334924 GA--CAGCTCGTCCGGAAGACAAggagtaagtt
i caeSp111.Scaffold629  C 0 I 483
s caePb3.Scfld02_0       3490679 25 +  4147112 GATTCAACTC--------CAAGAAGAGTGAgta
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I

a score=1322.000000
s ce10.chrX              5206155 16 + 17718866 ATCATGCTTT----TAAAAT
s caeRem4.Crem_Contig0   2024908 20 -  4500979 ttcattttttgctatAAAAT
i caeRem4.Crem_Contig0  C 0 I 377
s caePb3.Scfld02_0       3490705 16 +  4147112 ttcattattt----caaact
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763182 483 - 33334924 I

a score=91.000000
s ce10.chrX              5206171 1 + 17718866 T
s caePb3.Scfld02_0       3490721 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 1484
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763182 483 - 33334924 I
e caeRem4.Crem_Contig0   2024928 377 -  4500979 I

a score=0.000000
s ce10.chrX              5206172 297 + 17718866 TTTTCTTGCAAAAAATTCGTCGGTTTTCCTGCGaataatataattacaaattaataaatttagtaaattttaaaatattaaaaaaaaatGTCTTCGCAGATGGGCAAATAGCATTTGCCCAGTGAAAAAAAAATCGATAATTCGGCAATGTGTTGCCGTAGAAATATGGGTTTATACGAATGAAAATGTGCATCCAATTCTACTTCGCTTTTGCAAAAAAAGGAAAGCAAAATTATCATTTTCGAAATGGCAAAATTATTAAAAACACATGCCCAAATCATATTTTCCGCACAAAAT
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763182 483 - 33334924 I
e caeRem4.Crem_Contig0   2024928 377 -  4500979 I

a score=68.000000
s ce10.chrX              5206469 3 + 17718866 AAG
s caeSp111.Scaffold629   7763665 3 - 33334924 aat
i caeSp111.Scaffold629  I 483 C 0
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeRem4.Crem_Contig0   2024928 377 -  4500979 I

a score=5655.000000
s ce10.chrX              5206472 122 + 17718866 AAAATTGTTTTCCAGATTGGACCAAAAACCCCACCAGA---AGAGCCGGAATCTCCAAAACAAAT----CGAGCAAACTCGCGA------------------GCAAGGAAGCGATGGAGAATTGACTGGAGACGATATGGTATGGAA
s caeRem4.Crem_Contig0   2025305 143 -  4500979 AAAAACGTATGTCAGATTGGTCCAAAGACTCCACCTGAGCCGGCACCACCAACTCCAAAAGATGATTC-CGAGGAGCCGATCAAAGCCGAGGCGCCGAAACCAGAAGGAAGTGATGGCGAGTTGTCAGACGACGAT--GAAATGGA-
i caeRem4.Crem_Contig0  I 377 C 0
s caeSp111.Scaffold629   7763668 140 - 33334924 aaaCTCTTTTTGCAGGCTGGTCCGAAAACGCCACCAGAGCCATCGCCATCGCCTCCACAAAAGGCTCCGCAAGAGGTTCCTCAA---CAAGTTGT----GCAACAAATCAGCGACGGAGAGCTCTCTGATGATGATTCGGtataaaa
i caeSp111.Scaffold629  C 0 I 455
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I

a score=501.000000
s ce10.chrX              5206594 9 + 17718866 TTTATTGTT
s caeRem4.Crem_Contig0   2025448 9 -  4500979 TTCCTTGTT
i caeRem4.Crem_Contig0  C 0 I 344
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763808 455 - 33334924 I

a score=0.000000
s ce10.chrX              5206603 787 + 17718866  
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763808 455 - 33334924 I
e caeRem4.Crem_Contig0   2025457 344 -  4500979 I

a score=553.000000
s ce10.chrX              5207390 10 + 17718866 TCTAAGGAAA
s caeRem4.Crem_Contig0   2025801 10 -  4500979 TTCAAGAAAA
i caeRem4.Crem_Contig0  I 344 C 0
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I
e caeSp111.Scaffold629   7763808 455 - 33334924 I

a score=-741.000000
s ce10.chrX              5207400 13 + 17718866 ACTGAAGACAGTT----
s caeRem4.Crem_Contig0   2025811 11 -  4500979 ------ACCAGATAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7764263 13 - 33334924 ATTGAAAGTAAAT----
i caeSp111.Scaffold629  I 455 C 0
e caePb3.Scfld02_0       3490722 1484 +  4147112 I
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I

a score=10396.000000
s ce10.chrX              5207413 566 + 17718866  
s caeRem4.Crem_Contig0   2025822 572 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7764276 525 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3492206 534 +  4147112  
i caePb3.Scfld02_0      I 1484 C 0
e caeJap4.Scaffold18194   343847 34586 +   823664 I
e cb4.chrX              10548653 2588 + 21540570 I

a score=-12341.000000
s ce10.chrX              5207979 183 + 17718866 CTGG---TTTTTTTTTACCTTTTTGTTTCT--TGGTTTCTATCCGTTTGTTCTATTC-------TCAA---TTCCCCACAGTGTCAACATGTTTACT--------------------CTAGTTATCTAGTTAT----ATTTTCCACCTAC--GATGCGTTGGCTCAGCGGCAGGGAGAGAATAT-ATATTT-TTTCCT---TCTCTATCTAGCGTCTGG--AGAAAACTTC
s caeRem4.Crem_Contig0   2026394 156 -  4500979 GTGA----------TGTTGCAATTTCTTCTTATAATTCCA-----CGGGCGCTATCA---------------TCACCACATATGTAAGATATTTGTA--------------------TTAGTTCACAC--------------CCACCCAC--GTAGTGTTAGCTCA--------CCAAAAATat-acttttattttcttactcatttttcttctttcggGAGGAAAACTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7764801 174 - 33334924 CTCC--CCTTTTTCCAACATAGTCGCTTCT--TGGTTTCAGTGTGTTGGTTCTATTC---------------TCCACACAGTGTCAACATGTTTACCCT--------------TCAGTTAGTTATCTAGTTAT----ACTTTCCACCTAC--GAAATGTTGGCTCA--------GAAAGAGTAT-ACTTTTATTCTCT---TCACCTTCCGCCCT------GAAAAACTCG
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0       3492740 168 +  4147112 TTCTAACCCCTTTACCTTGTAAtcgtttct--tgatttt------ttaccTTTAGCT---------------TTTGCGTAGTGTCAACATGTTTACTT-------------------TCAACtgcttcgtttt----tctttccacccccaaaaaatgtttctcta--------gAAAGAATATCCCTTCTAttcttg---tttcatttcctCGT------GGAAGACGTC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   447818 187 -   823664 ------------------ctaattttttct--tcttttttatatATGGTCCTCACTGATTTATTTCAATGTTTATTGAAACTGTCAACATGTTTTCTCTATATTTTTGATGAGATATTTATTTAGCTAATTATGCCCACTTTCAATCTGC--AAAAGGCAAATTTGGTCAAAAAGGATGAATAC-ACACACTTTTCTT---TCTCGGCACTTC------------------
i caeJap4.Scaffold18194 n 34586 C 0
e cb4.chrX              10548653 2588 + 21540570 I

a score=153157.000000
s ce10.chrX              5208162 525 + 17718866  
s cb4.chrX              10551241 552 + 21540570  
i cb4.chrX              I 2588 C 0
s caeRem4.Crem_Contig0   2026550 506 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7764976 529 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       3492909 508 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   448005 462 -   823664  
i caeJap4.Scaffold18194 C 0 I 1858

a score=42626.000000
s ce10.chrX              5208687 99 + 17718866 CTC-AACTTCTTATCGCTCGTTTTCTGTGTTGCGGAAACATTTCCAACGTAATTCTT----TCGTGACGCAAAACCAAAAGTTCAG-----TGACCTCCG--CATAGTTTT-
s cb4.chrX              10551793 92 + 21540570 ccc-aGCTTCTTATCGCTCGTTTTCTGTGC----------TCTTGCACA------ATGCGCTCATGACGTAAAACCAAAAGTTCAGTGGGATGACCCCcg--cacagtttt-
i cb4.chrX              C 0 I 164
s caeRem4.Crem_Contig0   2027056 83 -  4500979 ctc-atcttcttatcGCTCATTTTCTGTGC----------TTTTCTGAG------TT----TCATGACGTAAAACCAAAAGTTCAG-----TGACCCCCG--CACCGTTTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7765505 86 - 33334924 CTC-AACTTCTTATCGCTCGCTTTTTGtgct--------tttttccaaa------at----tcatgACGCAAAACCAAAAGTTCAG-----TGACCCCCG--CAACAGTTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3493417 88 +  4147112 ctcaaacttcttatcgctcgttttctgtgc---------ttttccaata------tt----tcatgACGCAAAACCAAAAGTTCAG-----TGACCCCCGGccaacattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=2601.000000
s ce10.chrX              5208786 33 + 17718866 CACCAG-GAATTGTATTTCTGTAGTGCATTGTTC
s caeRem4.Crem_Contig0   2027139 33 -  4500979 CGCGGC-AATCTGTATTTATGTAGTGCAATGTTC
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold629   7765591 28 - 33334924 -----T-CGTTTACTCTCGGATAATACGTCGTTC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3493505 29 +  4147112 -----cactttcgatTTTATGTAGTGCAATGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e cb4.chrX              10551885 164 + 21540570 I

a score=-1721.000000
s ce10.chrX              5208819 2 + 17718866 AA-
s cb4.chrX              10552049 2 + 21540570 -AG
i cb4.chrX              I 164 C 0
s caeRem4.Crem_Contig0   2027187 2 -  4500979 -ag
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold629   7765619 2 - 33334924 GA-
i caeSp111.Scaffold629  C 0 I 195
s caePb3.Scfld02_0       3493534 2 +  4147112 AA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=-14449.000000
s ce10.chrX              5208821 51 + 17718866 ------------------------------ATTATT--AAAATTCAGTG-------------GGTGATTAGAGGAAAGCATTTGGGCTCACATTTC--
s cb4.chrX              10552051 51 + 21540570 AT---------------------------TATTACC--CAATTTCACTG-----------------TTCGATGATAAATAACAGAGGtatgaaattc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2027189 96 -  4500979 atagagaaaaagaggga-gaggAACAACGAGTTACCAACAGTATTACTGGAGAGCGTAAGTGTGAATTTAAAAGTAACATTCAGTTGTTATGAATGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3493536 65 +  4147112 ---ATGATAAACAGGAATGAGGGACATTGAAGAACCGAGAATAAAACCG------------------------------GTGAGCGGTGGTATATTTC
i caePb3.Scfld02_0      C 0 I 103
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e caeSp111.Scaffold629   7765621 195 - 33334924 I

a score=-4474.000000
s ce10.chrX              5208872 39 + 17718866 CGAAAATACCCCA---------------------------------CTTTTAAG--------TTTTAACAAAAGTT-----------GA-AA
s cb4.chrX              10552102 68 + 21540570 caaaagcaTTCGAATCATACTACAGATG--ACTatatagtttt---tttccaat--------tttttcacaaaatt-----------gatGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2027285 92 -  4500979 CGAAAGTGTCATGAGAAAACGGCAACTGTACCTTTCTAGCATTCACTTTCCATTCCATTCGGTTTTCCCCTGAGTTCGTTACCTGTAGTTTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3493601 103 +  4147112 I
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e caeSp111.Scaffold629   7765621 195 - 33334924 I

a score=-5258.000000
s ce10.chrX              5208911 34 + 17718866 TCAAACCGAGAACAAAC--TACCGTGCTACAAGTTT----------
s cb4.chrX              10552170 19 + 21540570 ------TCGAATCAATC-ATATC--------------------TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2027377 40 -  4500979 ------TCAGACCAAACGATATCACCCGTCatgccttttttctttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3493704 32 +  4147112 TCTGATCTGAACCAAAC---------CGTCATGCTGTGTTa-----
i caePb3.Scfld02_0      I 103 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e caeSp111.Scaffold629   7765621 195 - 33334924 I

a score=9032.000000
s ce10.chrX              5208945 77 + 17718866 TCTTATCAA---GT-GA-----GATGAGTGCAATCGGGCAATGTGGACA---AGATCGATGGTGACCTTCA---TCAAGAATAATGTGTTTT
s cb4.chrX              10552189 74 + 21540570 TGTTATCTTAAAGGAAA-----AACGAGTAC------ACcgtgtagaaaaaaaagtgatgggTGGCCTTCA-----AAAC--TAtccgtttt
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   2027417 80 -  4500979 tgttatcATTGTGG-AA-----AATGAGTGCAATTGGacaatttggaaaagaagatcGATGATGACCTTCA----CGAGa--aatgtgtttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7765816 63 - 33334924 TGTTATCAT---GG-AA-----TTCGAGTGCAATTCGACAGTATTGAAG-----------AATGACCTTCA----CGAaa-----gtgtttt
i caeSp111.Scaffold629  I 195 C 0
s caePb3.Scfld02_0       3493736 74 +  4147112 -----tcat---gg-aaaaaatgttgagtgCAATTGGACAGTTTCGAGAC----ATTGTCAGTGaccttcaaaactaaaa-----atgtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=-6274.000000
s ce10.chrX              5209022 49 + 17718866 CATTACTTTTTGAAACACTAACTTCACT---TGATC-------TCTGTA--GTGCCGGGAA-----------------------
s caeRem4.Crem_Contig0   2027497 47 -  4500979 -----cttttccaaacgcaa----caca---gtttt-------ttcatccatttccattcagttgc------------------
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold629   7765879 72 - 33334924 -----ctttcttcaccccca----cacacatttttttgacaaattcgtt--tttctttccg-ttgcttctcctcctcccccctc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3493810 65 +  4147112 -----cttcccTTCATCCTA----CACA---TTTTTGGGCGAATTCGtc--tttccttccactcgcttcttcttttcc-----t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e cb4.chrX              10552263 33 + 21540570 I

a score=-7881.000000
s ce10.chrX              5209071 337 + 17718866 TATTTTTTTTTCTCTAAGTGTTGTTTT--------------------------TCTCATCTACTACAAA--------AATTTGTCAATTCGTGTTGCTCTTaaagaa-aaaaaaaga-aaaagcaaaacaaaatagaaagagacaaaga----gaata---gcatggcaaaataaagaCGCCCAAAAAATGTGGACCCTTTTCTAGTA----------GCTTGAAATTCTGG---------CTGGATCGCTTCTGG---AAGAATTCGAAGACATTTACGGAGAAGAAATCAGGAAAAAAAAACTAGAAAAGATGG----GCGACTCG----CCACTTAACGACCCCCAAAAAATGGATATCTTCTATTTGTTAATATTCTAGTTT-------------------T----------GATATGTTTTGG-CACGCTACAAA
s cb4.chrX              10552296 257 + 21540570 --tatattcttttctagaatttt---------------------------cgatttcagttttcG------------AATCTTTCGATCcctct---ttctgaaaaatgctccgacaaaaaaac------------taaaaaatagaga----aaccg-------------------acataacaaaaattttg----tttgttaCCA--------------GTCGTCCCGT----CTGAGCCGGAtccgtttttg----------------------------------------gaaaa------aaaagatgt----tcCAG-------ATGCCTTA-----------------AAAAGGGTTGTTTgtaaatataatatttttcgGGAGAGACACAACGAGA--------AGGATACATCTCGATCAACCTACGAA
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   2027563 343 -  4500979 --tttatttttatctagAGTTTTCTTC--------------ATACTTCGCCGGTTTC-GTTTTGGCGA---------AATGTGTCAATTCTTTT-GGGGCTGAAGAA-GATGGAGcaagaaaacaac----a--agaagaaaataggaa----aaaagaagcgacgggatgataaacacaacacaaaaatttcg----TTTGGTACCAAAACCACAAAACCCGTTGCCCTCTATCCCTCATCTCGTTCCATTCCGGATAACAGATTCAACGAC---------------------AAGAAAAACTGGGAGAAGACGT----TCAAGCCCCAGAGCGCTTTACGAC-----TACCAC-CAAATATTTTGTttgtaaataatttatttt----------------gaag--------gAGATACATCTCGATGAACCTACAAA
i caeRem4.Crem_Contig0  I 19 I 14
s caeSp111.Scaffold629   7765951 323 - 33334924 TCTCTTATTTTATCTCGGGGTTATTTTCGCAAACCcagaatatatatttttttcttc-tctcccgCAAGAATgtgtcaatttttcaattctttttgtgtctgaagaa-gacgaagtagaaaaacgaagcaga--agaaaaacacagaaaactgaaaaa---gaaaaggatgaaaaacacaac---aaaacTTTG----TTTGTTACCA-----------------GTTCCGT----CCctgttcgtttttttctgg---aaagatTCTGAGAT-----------------------GAGACC------GAAGACGT----CGCAT-------CCGCTTAACGAC-----------------TACTTGTTTGtaaatattatatttt------gaGA------GCAT----------GATACATTCGGATCAACCAAAGAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3493875 342 +  4147112 tcttattttttatctagggttattttttgcgaaccca----acatttttcttctttc-ttttcttcgaagatgtgtcaattcttcaattcttttcgtgtcagaggaa-aacgaa----aaaaaaagaacgga--gcaagaaaacagaga----aaaaa---gaacgggatgatgaacataaca-aaaaactttg----tttgc-----------------------TTCCGT---------TGTGCTGGATTCTGG---AAAGATTCGAAGAT-----------------------GAGACCCCCAAAAAAGATGTGCCCCACAT-------CCTCTTAACGACCCAACTACCA---ATAATATTTGTTTGTAAATACTTTGTTTT------CGGATGTTATGAATGTAATATGGGGATGTCTTGAGATCAAGCTACAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=-5526.000000
s ce10.chrX              5209408 18 + 17718866 CACGTAACCGGCGGCTCC------------
s cb4.chrX              10552553 21 + 21540570 --TTCAA--AGTAGCTTG-----CTCATCC
i cb4.chrX              C 0 I 13
s caeSp111.Scaffold629   7766274 24 - 33334924 -TCTTAA--AGAAACTCGGAGCCCCCG---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494217 22 +  4147112 -TCGTAT--AGAATCTCAGAA--GCGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e caeRem4.Crem_Contig0   2027906 14 -  4500979 I

a score=5958.000000
s ce10.chrX              5209426  79 + 17718866 AAAACATTTG---CCACGCTAGTGACGCATTTT--------------CTGCAGCAAAA---TTAATTATCACACATAGTTC--------ATCTTT--------------------TCGTTCT--CTATT-----
s cb4.chrX              10552587 111 + 21540570 ATAACAAGTG---TCATGTTCGAGACGAAA------GAAGTTTACTGCGAGAAA-------TGAATTATTGCCTGAAACTTTTATCGTCATCATCGACTCTCGATTCAAtcgtttttgttct--ttttt-----
i cb4.chrX              I 13 I 53
s caeRem4.Crem_Contig0   2027920  92 -  4500979 AAAACAAGTG---TCACGTTCGTGACGCAACTACATAGAGGTGACGgcggaagaaaaaagttaatttattGTTGGAGGTTt--------atcatc------------------------tct--ttttt-----
i caeRem4.Crem_Contig0  I 14 I 6
s caeSp111.Scaffold629   7766298  89 - 33334924 AAAACATGTGTCTTCGCTTTCGTGACGTAGGTT---CGAG-----AGCGGAAGAGAAA---TTAATTATCGTTGAAAGTTT--------ATCATC------------------------ATG--ATTTTGCAGT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494239  88 +  4147112 AAAACAAGTG---ACACGTTCGTGACGCAGGTA---AAAG-----TGCTGAAGAGAAA---TTAATTATCGTTGAAAGTTT--------ATCATC------------------------ATTTCGTTGTGCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=-1339.000000
s ce10.chrX              5209505 46 + 17718866 GATATTGGTCAAACAA------------CCGCGTTT---------------------GAAAAAATGAAAAAAAAAAATA
s caeRem4.Crem_Contig0   2028018 38 -  4500979 GGTTTTTGTTAGTAGA------------TCACTTCC---------------------CGCTACAtgaaaaa--------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold629   7766387 71 - 33334924 TAGTTTTGTTAGCGGATCACTTCctccctctctcgctctccctctctttctcacaCATCGTTCatgaaaaa--------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494327 43 +  4147112 GGTTTTTGTTAGCAGA------------TCACTTCCTCTCC----------------TCGTTCaggaaaaa--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I
e cb4.chrX              10552698 53 + 21540570 I

a score=8988.000000
s ce10.chrX              5209551 26 + 17718866 CTTCTCAAACTGCACGTCCGCAA-----------------CCT
s cb4.chrX              10552751 43 + 21540570 CCTTCGAATCTGCACGTCAGCACAGCAGCAGCTCCTCACAGCT
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   2028056 38 -  4500979 ccttcaaaatcgCACGTCCGCAT-----CTTTTAACCTCAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7766458 36 - 33334924 tcttcaaaactgcACGTCAGCAT-------CCTAAcctcatct
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494370 35 +  4147112 tcttcaaaatagcACGTCAGCAT-------TC-AACCTCAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448467 1858 -   823664 I

a score=85926.000000
s ce10.chrX              5209577 187 + 17718866 -TTTTTCTCCCAACAGTTTAATGA---GCCCCGTTGAGTCGCCCG--GGGGCCCTCCGG---------------GGG---------TAGTGAG-----TTGG----CCGTGCGGCTTCTCATCACTATCCATCACTTTTGCTCTCCCGT-TTTCTTTTTCTTTTCCACCTGTGGCACAGCTATCTTTAACACCGCGTAAAGCACA-----CTGCACATTGTACTCGCAAGGG-
s cb4.chrX              10552794 205 + 21540570 -CTTTTCTTACAACAGTTTGATGA---G-TTCGATG---CCCCCG--GTAGG----TAGGAAGGGAAGAGA---GGG--TAAAAGATAAAGAGCAATTTTTGTGGCGATGGTGGcttctcatcatttttcg-cttcttttttctctcgt-tttctttcgcctttcCACCTGTGGCACAGCTATCTTTAACAGCACATAAAGCACA-----CTGCACAGTGTACTCCGGAGG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2028094 188 -  4500979 -CTTTTCTT-CAACCGTTTGATGA---G-TGCGATGAGTCGCCCG--GGAGGCCTTCGGGAGACGGAGAGA---GGGATGGAAAGTGAAAGAG-----TTTA-------GGCGGcttctcatca--------------ttttccctcgt-tttctctttcttttccaccTGTGGCACAACTATCTTTAACAGCACATAACGCACA-----CTGCACATTGTACTCGGGAGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7766494 188 - 33334924 -cttttctt-caacagTTTGATGG-CGG-GGAGATGAGTCGCCCG--GGAGGGCCtacaagaagaaagaga---gag----agagagaaagag-----ttgG------GTGAAgcttctcatca--------------ttttctctctcattttctcttcatttctacCTGTGGCACAGCTATCTTTAACACCGCGTAGAGCACA-----CTGCACATTGTACTCGGGAGG--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494405 185 +  4147112 -CTTTTCTT-CAACAGTTTGA------G-TGCGATGAGTCGCCCG--GGAGGGCTCCCGGGAGAGTAgtgaatgaag----agaaaaagagga-----gttG------CTGCGGCTTCTCATCa--------------ctttctatctt-ttttctctgcttttccACCTGTGGCACAGCTATCTTTAACAGCGCGTAAAGCACA-----CTGCACATTGTACTCGGGAGG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   450325 177 -   823664 TCTTTTCCT-CAACAGTTTGACGAGCAG-CGGGACGAGCCGGCCGCAGGAGGCCCACCGCC-------------GGG-----------AGGAG-----TTGG----CTGTGCGGCTTCTCATCA--------------CTTGCTCTCAA-CGCCGTGGCCCGTG----TGGTGGTACAGCTATCTTTAACAGCGCGTA-CGCACATTGCTCTGCACAGTGTACTCGGAGGA-G
i caeJap4.Scaffold18194 I 1858 I 1098

a score=9096.000000
s ce10.chrX              5209764 27 + 17718866 CCTCACACAGAGGCACTACCTCAGTCG
s cb4.chrX              10552999  8 + 21540570 --TCTCAGTA-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2028282 25 -  4500979 --TCTCAGAGACGCACTACCTGAGTCG
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold629   7766682 25 - 33334924 --TCTCAGAGAGGCACTACCTGAGTCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494590 25 +  4147112 --TCTCAGAGAGGCACTACCTGAGTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I

a score=-1224.000000
s ce10.chrX              5209791 22 + 17718866 TC----GACTCGG-------------CTCCG------------TCCGACT-G
s caeSp111.Scaffold629   7766707 52 - 33334924 ACCCGGGACTCCGTGCAGTTTTTCATCTCTATCATCaacactttctctctct
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494615 34 +  4147112 ACCTGGGACTCCG------TTTTCATCTCTA------------TCTCCCTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e cb4.chrX              10553007  0 + 21540570 C
e caeRem4.Crem_Contig0   2028307 23 -  4500979 I

a score=16573.000000
s ce10.chrX              5209813 283 + 17718866 CTCTTCCATTC-------AAACAGTCTCTTTTGTTTCTACACACTAGTAGTGTCAGTTATAGTCTGGGACATAGTGTAAGCCGCCAAATAG---TTTTTGGTAGATATCTCGACGCCATCT-GTGTCCAGA---GCGCACTTTTCAAGGT--CA-CCCA--CTC---------TTTTTTTTTCATCCCATATACT--ATAATCACGTCACGTCACTCACGTCCAACCTATGAATGTTTCACGAA--------GGACCCCCCAAGTAATCTTTTC----GTGTCGAAAAAGTGGAAAA-GAAAGGATTAGTTCGGCATCAGTTAGGC
s cb4.chrX              10553007 215 + 21540570 ------CCTCC----------TAGTGAAgatctctcttttcc--------ttcttgtTATGAT------CTTAGTGTAAACCTTTAATTAGCTCTTTTTGATTGATTTGT----G----CA-GGTCCATAAA--GCACCCCTT---------CT-TTCA--------AAAAggtcttttttttattctgtaTCTT--AGGC-----TCACATCACC---------TTTATAAATGTTTAAT-----------GGACCACCC-AGTAACCCTTTC---------------TACGCACATGTGGGGATTAGTT---------TTTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2028330 255 -  4500979 CTCTTGTCTCC----ATTAAATAGCCTTTATTTCTATTGCTC--------TGAGAGTTATGAT------GATAGTGTAAAACGGTAATTAG--CGTTTTGATTGACTTCT----GTCACCA-ATTTATTGAA--GTGCACTTTTCTGGGCCGCC-CTCACCCTGGGCAAAAggtctttttc--------tattct--tgaA-----TCACGACACCCACG----ACTCATGAATGTTTCATTGA--------GGACCTCCCTAGTAATCCATGA---------------gaggaaaa-aaaaggattAGTTAAGCATCAGTTAGGT
i caeRem4.Crem_Contig0  I 23 I 70
s caeSp111.Scaffold629   7766759 267 - 33334924 ctctcttactCCCCAACCAAACAGCCATTGTTTCTACTACAC--------AAAGAATTATGAT------GATAGTGTAAAACGTTAATTAG--CTCTTTCATTGGCATTC----ACCCCCAGGAGCCATCAGTTATGCACTCTAGAGAGT--CCGCCCA--CTTGTCAAAAAGCCTTC-----------TATTCT--AGAATTACGTCGCATCACCCTCGCC--TCTTATGAATGTTTCATTGAGGGTGGGGGGAGGGCCT-AGTAATCCTTGAAAGGACCTC-----CTAAGAAAA-TAAAGGATTAGTT---------TC----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494649 248 +  4147112 CTCTTCTCTTC----ATTAAACAGCTATTGTTTCTACTCCCCTT------GAAGAGTTATGAT------GATAGTGTAAGACGTTAATTAG--CTCTTTGATTGCCGTTT----GCCAC---GAGCCATCA---CTGCACTTTTGAAGGT--CT-CTCA--TTCGGCAAAATGCCCTC-----------TTTCCTTCAGAATTACGTCGCATCACCCGTCTT--CCTTATGAATGTTTCATTGA--------AGACCCCTC-CGTAATCCTTCA----GTacc-----cgaaaaaga-aaaaagattagtC---------TG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I

a score=-2678.000000
s ce10.chrX              5210096 36 + 17718866 CCATGAATCTAT----------------GAATGTA-TCCCAACATTTTATTTG
s cb4.chrX              10553222 50 + 21540570 ATATAAATATTTTACAAGCGCTTTTGATGAATATG---GCCATTTTGAATTCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   7767026 25 - 33334924 ----------------------------GAATCTGCAAGCTTACTCTTACTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494897 24 +  4147112 ----------------------------GGCTATG-AAACTAACCCTTATTTG
i caePb3.Scfld02_0      C 0 I 28
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e caeRem4.Crem_Contig0   2028585 70 -  4500979 I

a score=-1201.000000
s ce10.chrX              5210132 26 + 17718866 ----CAAGTATTCAATGGTATTAGTTTTTG
s cb4.chrX              10553272 26 + 21540570 ----ATACTTTTCATTGGCCTAAATATTTA
i cb4.chrX              C 0 I 55
s caeSp111.Scaffold629   7767051 16 - 33334924 ATGGATAGTATT-ATTG-------------
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3494921 28 +  4147112 I
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e caeRem4.Crem_Contig0   2028585 70 -  4500979 I

a score=-285.000000
s ce10.chrX              5210158 15 + 17718866 GCCAATGTATACATG
s caeSp111.Scaffold629   7767067 14 - 33334924 GCAAA-Gtcgatttt
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3494921 28 +  4147112 I
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e cb4.chrX              10553298 55 + 21540570 I
e caeRem4.Crem_Contig0   2028585 70 -  4500979 I

a score=-211.000000
s ce10.chrX              5210173 1 + 17718866 ----T
s caeSp111.Scaffold629   7767081 5 - 33334924 tattt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494949 1 +  4147112 ----C
i caePb3.Scfld02_0      I 28 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e cb4.chrX              10553298 55 + 21540570 I
e caeRem4.Crem_Contig0   2028585 70 -  4500979 I

a score=5575.000000
s ce10.chrX              5210174 40 + 17718866 CTTACCTATTTTTTGTTCTAATTGCTCTTTCCCTG-AGCA--A
s caeRem4.Crem_Contig0   2028655 37 -  4500979 ---CCAATCTGTTTTGCATAATTGAGCATTTCCTG-TACA--A
i caeRem4.Crem_Contig0  I 70 C 0
s caeSp111.Scaffold629   7767086 43 - 33334924 atttcttttcgttctcCATAATTGAGCATTTCCGATAACAACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3494950 40 +  4147112 CTTTCAAATCATTTTGCATAATTGAGCATTTCCTG-AGCA--A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I
e cb4.chrX              10553298 55 + 21540570 I

a score=18261.000000
s ce10.chrX              5210214 189 + 17718866 TATCTTCCTGATCTCGTAAATCAAGTGTGAGAATACAAATACTCCGTAAATGCGGAAATACGTTATGCCA--------------AG-----------AAAATGCGGAAATACGAATCCCTCGC-ATC-TCCA-GAAACA---GAACACATC---TAAGAGTTGGCTAGTTGTCAGCC------------TTGTTTTTCCCTTGCGCCTCATCCGCCATTCAAAAAAATGTGAACG-
s cb4.chrX              10553353 151 + 21540570 TTTCATTTGGATCTTGTTTATATAATGTAAAAGAACATGAAAG--------CCGGAAGT---TCTTGTCAATGCTC--------GGTTGAGA-----------CGGAAATATATATCCAGCCCAATC-TTCAGAAAACATAGAATGAACTCCGGAA----------ACTTGTCAgc-------------ttttttctgctttccg-------------------------------
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   2028692 189 -  4500979 ACTCTTCCTGATCTCATAAATCAAGTGTGAGAATATATATACA--------CCGGAAATATGTTCTGTCAACGTATACATGAGGGGTTAAGACCAAGAAAATGCGGAAACACAAATCCCTGCC-ATC-TCCA-AAAACA---GATCAACTC---AA----------AGTTGTTAGCA------------TTTGTTTTTCCCTCCGACCCatcca--------aaaaaactgaaacg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7767129 180 - 33334924 ACTCTTCCTGATCATGTAAATCAAGTG-----GTAAGAAGACTAC-----TCCGGAAACGTGTTCTGTCACTGCTT--------CGTCCaag-----aaaataaggaaatGCATATCCCTCGC-ATC-CTCA-AAAACA---GATTGACTC---AA----------AGTTGTCAGCCCgggttttt---cattttccgttttcctattcaaa----------aacaagacgAACG-
i caeSp111.Scaffold629  C 0 I 12
s caePb3.Scfld02_0       3494990 188 +  4147112 ACTCTTCCTGATCTCGTAAATCAAGTGTGAGAATACACATACAGC-----TCCGGAAACATGCTCTGTCACTGCTA--------CGACAACA-----AAAAC--GGAAATGCATATCCCAAGA-TTCTCCCA-AAAACA---GATTGACTG---AA----------AGTTGTCAGCGtttgttttttcccttttttctctatccGCCCCGAACG--------AACAAG-TGAACG-
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194   450502 1098 -   823664 I

a score=-4075.000000
s ce10.chrX              5210403 32 + 17718866 TCGATATGAGAACTGAC--ACCACCAAAGTA--GTT-
s cb4.chrX              10553504 18 + 21540570 -------------------GCAGTCAAAGCAATGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2028881 33 -  4500979 --aAAGAGAGAAAGGCTCTGCTGCCAAAGCA--GATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7767321 31 - 33334924 TCGACGAGAGAACGGATGAGAGGGGAGGGAG------
i caeSp111.Scaffold629  I 12 C 0
e caePb3.Scfld02_0       3495178 27 +  4147112 I
e caeJap4.Scaffold18194   450502 1098 -   823664 I

a score=70312.000000
s ce10.chrX              5210435 651 + 17718866  
s cb4.chrX              10553522 707 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2028914 678 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7767352 713 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3495205 676 +  4147112  
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194   450502 1098 -   823664 I

a score=8310.000000
s ce10.chrX              5211086 34 + 17718866 --CACTCTTCGTTGTTTCAGGCCTCGCACGCC------ACCT
s cb4.chrX              10554229 31 + 21540570 --TCCTCT---TTGTTTCAGGCATCGTACATC------GCCT
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   2029592 23 -  4500979 --CGCCTT---TTGTTTCAGGCTACGCT--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7768065 37 - 33334924 --CGTCCA---TTGTTTCAGTCCTCGCTCACCGAACACGCCT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3495881 37 +  4147112 --CGCCTA---TTGTTTCAGACCACGCTCTTCTCAACAATCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   451600 33 -   823664 CGCTCTTT---TGGTTCCAGGCCTCGCACTCC------GCCA
i caeJap4.Scaffold18194 I 1098 C 0

a score=-4028.000000
s ce10.chrX              5211120 31 + 17718866 CTTCGCG-CTCGACAGTTCA--GCTGTCCGCAAT
s caeRem4.Crem_Contig0   2029615 30 -  4500979 CTCCTCA-CTCGC---TACAACAACGTCCGCAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7768102 25 - 33334924 ----CCATCGCGC---TCCA--ATCGTCTGCTTG
i caeSp111.Scaffold629  C 0 I 6
s caePb3.Scfld02_0       3495918 18 +  4147112 ----CCA----------CCA--AAAGTAAGCAGC
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   451633 31 -   823664 TCTCGCA-CGCGACCCTTCA--GTCGATCGCCGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10554260 19 + 21540570 I

a score=-2085.000000
s ce10.chrX              5211151 36 + 17718866 CGCCAACAAGCCGACATCGG---AACTCGTCTTTTTCCC
s cb4.chrX              10554279 33 + 21540570 CGCCAACCA---AACTTCGGAACACTTTATAC---TCGC
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   2029645 33 -  4500979 CACCAGGTA---GACATCGG---ATTTTGGATGTATCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7768133 27 - 33334924 ------CAA---GACAACGG---ACTTCTCCATTGCCTC
i caeSp111.Scaffold629  I 6 C 0
s caePb3.Scfld02_0       3495946 33 +  4147112 CTCCACCAA---AGCCAAGA---CTTCCGCAACCATCTC
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194   451664 36 -   823664 CGCCAAAGAACCAATCACGG---AACGGGTCTCCATCCC
i caeJap4.Scaffold18194 C 0 I 828

a score=-2385.000000
s ce10.chrX              5211187 224 + 17718866 CGCCACGCAGGTTAGT---------CTTCAAAATTTTTGAAAATGATATAGCAACAGACAGTG---------TCTATTGTATCAAATTAGAGTGTTTCGGTTT----CGTTTGCAAA--------TGAAGGAACAATGCATGCCGTGTCT-GATT-TTTTAGGATTGATCGTTTGATTAATCGGTC----------------------GCACTTTACACCGTCACATG---GTTAATACA-------------CAT-----TTTGGCGCATTGTA--TTACTCCCTATCTAAACATGAACA
s cb4.chrX              10554312 202 + 21540570 CGCTTCGTG--------------CCCTTCACAGGTTTGTTTAATTA-----TTACGGTAGCTA---------TCT-TTCTGCCGA------------CAAAGG----TTCTTGCAAA----------------------------CGttt-tttt-GGTTAGGGTTGATCGTTTGATTAATTGGTCTGATGTCACCG----GAGAGTAGCACTTTACAGTGTCACATGCGTTTTAACACATACACTCACTTCACACAGAAATTTCGCGCCTATAA--TCAC-----AT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2029678 246 -  4500979 CGCATCGCAGGTTAGTTCATCATCAATACACGCGAATCTTCAAATACGT--ctacaaaaactaaaagaaacgtat-tcctacaaaa------aattgtaacaa----TTTTTGCAAGGAATACTGT----------------TGCCGTCTGTCTT-TTTTAGGATTGATCGTTTGATTAATTAGTCTGATGACACCGCGTCGGTAGTAGCACTTTACATTGTCACATG---TTTAATACA----------TCACAT-----TTTCGCGCCTTTCA--ACAC-----GTCTAAACTTGGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7768160 180 - 33334924 CAGTCAGAAGGTTAGT-----------------------------------TTACATTCAGTG-----------T-CTGAAAAGA------------cggtttttgctttttgcaAA-----CTTTCAAAGA----------CACTATCT-TCTTGTTTGAGGATTGATCATTTGATTAATTGGTCTGATGACACTATGTCTATGGAAG-------TACCGTCACATG---GC-----------------TTACGC-----CTAATAGTCTAAAGTGAAAC-----AATTCT---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3495979 207 +  4147112 CCATTCGGAGGTAAGTA------CAATACACAGATTC--------------TTACGCTGATTA---------ATT-TTTCGTAGA------------CAGTTT----TGTTTGTAGA-----CTGT------------------GTATGT-CCTT-TTTTAGGATTGATCGTTTGATTAATTGGTCTGATGACACTATGTCGGTAGTAGCACTTTACACCGTCACATG---TTTAAAACA----------TCACAC-----CTTTCCGCCTTTCATTTTAC-----ATTCCCAACTTGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   451700 828 -   823664 I

a score=35881.000000
s ce10.chrX              5211411 182 + 17718866 TTTTTGCAGACATGCGACTCGCGAAGTTCATT---CCCG---------AAAACGCCGACACGACGATAAGAAGAGATCA---ACCGTTAGACCTGAAGTCTCCAAAGAGCTCACTTTCCCAGTTGTTGCCACCCAAAAATGTCTGTCACTGCTGGAATTTGTAGAGAAGCGGGTATGTGTTTGTGTGGGTTCAT----------------------------CGA
s cb4.chrX              10554514 199 + 21540570 ---TTGCAGACAACATGT---TAATGTTCAAC---CTCG---------TAAACGTCGTAGTTCCGAAGAAAGAAAGCCA---GTGCCGAAGGTTGACAATTCAAAGGAGCTGACGTTCCCGGCACTTGCTAAGCAGAAATGTCTTCAACTTCTGGAATTCACCGaaaaaa----aGGTTAGTGTTGTTGTTTGT-TGGGCATGCAAGTTGGTGGTGATAGATCGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2029924 207 -  4500979 TGATTGCAGACAACGCTCCCGCGATGT---------TCG---------TAAACGTCAAgtcgaagaaaagaagaagccaTATGTCCGAACTGATACTACTTCAAAGGAGTTGACGTTCCCGGCGATTGCTACTCAGAAATGTTTGTCACTGCTggaattcactgaaaaaagagtAtgtttgtgtgtttttgtgtatgtgtgtataaatctgtgtgGATGAGCCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7768340 173 - 33334924 T--TTGCAGACATGTCGGCCGTGAAGTTCATCACTTCAA---------AAGACGCTCGGAGACTGATAGCAAAGGGAAT---GTCGTGAGACCGGATATCTCAAAGGAGCTGACATTCCCGGCGATTGCCGTTCAGAAGAGTCTGTCACTACTGGAGTTTGTTGAGAAACGGGTATGTTTATTCTCA--------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496186 189 +  4147112 T--TTGCAGACATCTTCAACGCGATGTTCGTCGCATTCATCGTACGCCAAACCGTCAGGAGCCTGAGAAGAAAACTATC---GTGATTAGAGGTGATGTCTCCAAGGAGCTCACCTACCCCACACTTGCTACTCAGAAGTGTCTATCCCTTCTGGAATTCGTCGAGAAAAGGGTACGTTTGTGTTTATGTCGGA-------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   452528 161 -   823664 tttttgcagacagA---------------------CTCG---------TAAACGGCGTATCGTTGATAAGAGCGAA------GACGAATACGACGAGGTTTCCAGGGAGCTTATTTTCCCGGCGATTGCTTCCCAAAAAGCTCTATCTCTGTTGGAATTTGTGGAACGAAGGGTAAGTAAGTCTTTGTGCTCGT----------------------------CGA
i caeJap4.Scaffold18194 I 828 I 648

a score=49416.000000
s ce10.chrX              5211593 206 + 17718866 AAGTCACAAAAACGACGAGCTGTGTGTGCTACGTCGTGCTGTTTCCGGAA--GCCTGTGAGCC--AAAGGGTTCCATCAAAAAAAACGTTTGTTCCGAATGCTTATCAATCACAGA----CAGCCCCTGCTTGAC-TTTTA--CTCTATTTGTGTGGTGCTAGTCGTCTATCGGTCTATCAAGATGTTTGAAACTTTTGCGAT-TTTATCACAATATC
s cb4.chrX              10554713 170 + 21540570 GAG----GGAGGGGGAA--------GTGCTACTCGGTGCCTGTTCCGGAA--ATGCCAAAGCCAAGA-GGGTTCCATCGAGC--------TGTTCGGGAAGCTTATCAATCACAGA----CTGCTCTTGCttgactttttt--ctctattttcgtT---TGCATCCACATCTCGTTGGATAAACGATTCAT----TTCTC----AATGCC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2030131 188 -  4500979 GTA----GGAGAAAAAGAGC----TGTGCTACGCAGTGTCTGTTCCGGAA--ACGTCGGAGCC--GA-GGGTTCCATCAAGCACAACG-TTGTTCCGAAAGCTTATCAATCACAGA----CAGCTC--GCTCgac-ttttt--ctctatttttgag---tTAGTCGTCGTCTGTCGAGATGAGATGTTTGGAACATTCTC----AGTATCACAATATC
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold629   7768513 182 - 33334924 ---------------AGAGT----TGTGCTACACGGTGCCTGTTCCGGAAATGCCCGAGAGCC--AAGGGGTTCCATCAAGCAAAACG-TGGTTCCGGAGGCTTATCAATCACAGA----CGTCTC--GCttgac-ttttt--ctttattttcgcA---TCAGTTGACTGGTG--GGAGTTAGATGTTTGTAGCATTCATGCTCAATATCACAATATC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496375 192 +  4147112 -------GAGAAAACAGAGC----AGTGCTACTCGGTGCCTGTTCCGGAA--GCCCCGGAGCC--AA-GGGTTCCATCAAACAAAACG-TTGTTCCGGAGGCTTATCAATCACAGACTTTCTTCTC--TCTTGac-ttttttcctctatttttgcC--TTCACTCGACTATTG-CTGGGTTAGATGTTTGAAGCATTCTTG---GATATCACAATATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I

a score=-945.000000
s ce10.chrX              5211799 21 + 17718866 GGTCCAACCA--ACT----GGCTCCGG
s cb4.chrX              10554883 21 + 21540570 ------AGTATTATTCCCGAGCTCTCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   7768695 11 - 33334924 ------------ATT----GACTCTTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496567 11 +  4147112 ------------ATT----GACCCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I
e caeRem4.Crem_Contig0   2030319 28 -  4500979 I

a score=-23649.000000
s ce10.chrX              5211820 267 + 17718866 --------CCGAG-----ACGCTTCTGAATTTTTTTTTCTTGCAATCAAG-----------TTTACTCGGG----ATGAAAAAATGTTATCTTTC---------------------AATAACAAAT----------------ATTCTCCTTTTTTTCAAAAACTGCCAGGCTACAATTACATCTTTTTTTT-----CTCATA--GAATTTTTTTG---GGGAAGCGTCTGGTTGTGTCGGCTTTT------C-CGAATATCAATTTTCTTC--ATTTTT--TTGTGCTGCGTCCCCA--GTGTCGCCACAACCCTTCAACC-------CCTT-----GCAC----TCGTCAGTGGCGGGCAAGAGAGAGAG
s cb4.chrX              10554904 214 + 21540570 --------CCAAG-----GAGACTCAAA-----------GAGTATCTGGAA----------TTATCTAATT-----------CATTTCAGTTTAT--------------------------CCGGTTGA------------------ATTTTCTCCC------------------------ATTCTCTTGTAGC--CTGATA--GAAATTCTCACGAAAAAA-----------GCGCACTTTTCT------CTCgaatatcatttttcttcgaaacTTTCTCTTTTCTACATCCCTC--ATGTTGCCTCAACCCTTCAAC-----------------TCAC----ACGTCAGTGGCGGccaaaaagaataa
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2030347 283 -  4500979 --------CCGAG-----ATATTTTAAA----CTCACgcaagaaactgaaaacaatatgtcttttttcttt-----------tttctcactttttgttttctttcaac-gtttcgcagttaccagtcggcctt---------ctttcattttctttc--------tttccgaatagttttttttcttctgtcgCTTCTGATA--GAATACTTCAC---AAAA-----------GCGTTTTCTTCT------CTcgaatatcatttttcttc--aattcttttcttGTTGAGTCCCTA--GTTTtgtcacaatttttcaact-------gctcTGGTTTCAC----TCACCAATAG-----AAAAAGAACGA
i caeRem4.Crem_Contig0  I 28 I 9
s caeSp111.Scaffold629   7768706 286 - 33334924 TGCTCAATCCGGGCGCGAGATTCTC-------------------TTCGAG------------TTTCTCAAACAGCAGGAAAgcatattatttttcatcgttttcttttaGTTTCGCATCCCCCAATCTTTGTTC--------Cttcatctttcttct--------ccGGCCGACGACATGTTTTATTTCTCAGT--TCGATGTggaacttttcag---aaaa------tgctcattcttttctct------ctcaaatatcctttttcatc--attttt-------ttacGTCCTTCG-GCGTCACCACAATCCTTCAATC-------GCTTTAGTCGCGCCCCGCCGTCAGTGGCGTAGGAGAAAA----
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496578 283 +  4147112 TGCTCGATCCGT------GATTCTCG-------------GAGCAGTCGAATA---------TTTTCTCATG----AGAGAAACATATCTTGATTC------TGTTATTGGATTCACTTTTC---ATCTAGGCTTACTGTCGgcttctcctttcttct--------tcttgcaaaagcttttcctttttttca------------gaaagtttcaa---aaaa------tctttctctctttttctccgttcctcaaataacatttttcatc--attttt-----tgttacgTCCCCAGTGTGCTGCCAAAATCCTTCAATCCTCCAATTCTTCAGTCGCAC-------TCATAATTGTGGCAAAAAA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I

a score=-193.000000
s ce10.chrX              5212087 39 + 17718866 TCGCGTTTCTAGGCTTTTTGCGCAAGTCGCAAGTAG---------TCC---
s caeRem4.Crem_Contig0   2030639 38 -  4500979 TCGCG-TTTCTAGGCTTTTGCGCAAGTCGCAAG------------TCCCcc
i caeRem4.Crem_Contig0  I 9 I 3
s caeSp111.Scaffold629   7768992 41 - 33334924 -------TTGAGAGTTTCATTTCTAGGCTTACGCGCAGAAAACCCTTC---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496861 29 +  4147112 -------TCCAGGGTTTCCGCGCGAGTCGTAAG------------TCC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I
e cb4.chrX              10555118 13 + 21540570 I

a score=11168.000000
s ce10.chrX              5212126 203 + 17718866 -----CATTTTTCTTACTACACCTCGG-TTTTCAACGG-TTTTTCAAGTTCACTTGAAGCAGTGTGATGTGCAT-----------GGCAAATCCTAAAAATTGCATGTAGT--------------GGCACCAACAGAACTATTGCTCTTTAGGTGGACCTCTTAGGTGCCTTTTTTGTTTTGCT---GCTGCTTT--CAAAAATGCAATGTTACCTGTAACCTGCGTAACTTTTGTTAAA
s cb4.chrX              10555131 125 + 21540570 ----CATTCTT-----------TCAAg-cttttattggatttttcaagttcactTTA---------------CGTCTACTAGTAAATC--ATAA-GAAAATTGCGTGTGGTTTGATGGTGTTGGAGGCAC---------------------------CCCCT-CAATTTACTTTGGGTTTCGAGCTG-----------------------------------------------------
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2030680 135 -  4500979 ----catttttcttccctacacctcat-ttttcaacgg--tTTTCAAGTTCACTTGAAGCGCTGTGCATTGCCTTTTACTCCTGACGCAAATCA-GAAAATTGCGTGTGGT--------------GGCAC---------------------------CGCTTCCGAAGCATTATTGGTTTTGTG--------------------------------------------------------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   7769033 184 - 33334924 TTTTCAACCCTTTCTACTACACACCTCATTTTCAACGG--TTTTCAAGTTCACTTGAAGCCTTCCGTTTTGCTTTTTACTCCAGACgcaaatca-gaaaattgcGTGTGCCTATGTGTT------GGCAC---------------------------CTCTTTCGGACCATTATTGGTTTTGAA---GCTCTATGCACAGACGTGCAATTT-----------------ACTCTCACTAAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3496890 172 +  4147112 CCTTTAACCCTTCGTACTACATCTCGT-TTTTCAACGG--TTTTCAAGTTCACTTGAAGC-------GCCGCTTTTCACTCCTGACGTAAATCA-GAAAATTGCGTGT--CTTTGGTGT------GGCAC---------------------------CTCTCTTGGAGCATTATTGGTTTTGAG---GTTCTATG--CAGTCGTGCAATTT-----------------ATTTTCGCTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I

a score=-4478.000000
s ce10.chrX              5212329 102 + 17718866 TCACACCTAGAAGTCAgcgccagtgagaaaatggatcaaactcacttct--atggtgccaaaattattaaatatcataataaagcttttcaaaagaattgttga
s cb4.chrX              10555256  28 + 21540570 ------------------------------------------AAGCTCTGAATGCTGCTA-------------------------TTTTC---------GCTAa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2030815  35 -  4500979 -------------------------------------------AGCTCT--ATGCAGAcagaaaactta---------------cttttt---------actaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3497062   0 +  4147112 C
e caeJap4.Scaffold18194   452689 648 -   823664 I
e caeSp111.Scaffold629   7769217   0 - 33334924 C

a score=-56810.000000
s ce10.chrX              5212431 289 + 17718866 aagttttt-----ttttggcaattaaaaagtgacaattactgtgtttttgtcatt-----ttttgaaataactatagcactgtcacatgttcgaattcctagaatgtttcaataattatatttgaaacataagtagatcataaaattg--gaaagtatactgtttttgatcgacgacttccaaataaaaatgaaaaac--ttgtaattgccacattttgaaacaaaattcaattaaaaaaattt---ttgaaaagtttt----------------actttgatatttggtcgttttTGCCCCACTAGCGCTCCACCTTTAAG
s cb4.chrX              10555284 195 + 21540570 aagcttttgaaaatttcgaaagctgAACC---------------------TGACC-----TGTCACATCAA----GAAAC--CCAGAATTTTGATcctttagag------aaaaaaaatccccagaa-aaaaacaaagtcaGTTGTTCCGGCCAGCAGAAGAAACCT-------------------------AAGAGC--CCCCAA-AAACACATAC-----------------ACAAACATTC---G---AAGACCCT----------------AGAAAATCGGT---------------------AGATCATCTCTCTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2030850 191 -  4500979 aaggtttt--caattttagaatcTGGATA---------------------CGAccacgtttttcaaaatcg----gATACTGCCAG-GTTTTGA-CGTTTAGG-----------------CTTTGAA-GAAAATGGCTTATGACATTTGAATAAGTGGTATGACCTC----------------------------TGC--TCGTAA-TGTccccttt-----------------aaaaattttt---gtgacgGGTTTt----------------atgaaaacgtcaa-----------------aaagaTTAATCTTCTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7769217 163 - 33334924 -AGGTTTA-----TTTCTTCATCTACTTA-----------------------TTC-----TTTACGATCGA-----------CT------TGAAACGTTTA--------------------------------------------GCC--ATAAATCCAC---TTTT-------------------------GAGAGAGTTTTTAA-TGacgttttt---------gttttaaagGTATCGTTT---CTGAAGTCTATTCACTTTCAACCCATTGAGTTTCTGAGC---------------------GGTATGATCTTCTGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3497062 175 +  4147112 -AGGTTTC-----TTTCCtctttcatata---------------------ttttc-----tctcaaatgGA-----------CCACAAGGAAAAACGTTcata-------------------------aaaaacaaaggaaGAAGTTC--ATGACTCCATAAACTCT-------------------------AAGTGC-TTTTTAA-TAGCACTTCC---------ACTT----GGTGGCACATGACATATAGGATATT----------------ATTATATTATT---------------------GGCATGATCTTCTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452689 648 -   823664 I

a score=143766.000000
s ce10.chrX              5212720 207 + 17718866 TTATGGTATTAGTGACAAGAA-----GA---TCT-AAGGAGTGACCGTATATACTCTTTATCTTTCTCTCTCACTCTTTCTCTCTTCTCATTTGCTTGTTCGCTCATC-ACTCTACGAAAAGTCAAGAGCTATTGCAAACATACAGAAGC-------GGCTC-ATTGTGAG--TTGCGAGAACAAATTGTACTCTGCTAATTGTTTTAG------AGAAT-CGAATGGGTACGT-
s cb4.chrX              10555479 181 + 21540570 TTATGGTATTAGTGACAAGAAGTAGGGAGCGTCT-TGGAGAGTCCCGC--------------------------------GCTC--CTCGTTTGCTTGTTCGCTCATCACCTTTGCGAAAAGTCAAGAGCTATTGCAAACATACAGAAGC-------GGCTCAATTGTGAGACTTGCGAGAACAAATTGTACTCTCCTAATTGTTCTAG------AG----CAACTGGGTACG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2031041 178 -  4500979 TTATGGTATTAGTGACAAGAA-----GAGCCTTT-TGGGTGAGTCCGT--------------------------------CCTCGGCCCATTTGCTTGTTCGCTCATC-TCATTGCGAAAAGTCAAGAGCTATTGCAAACATACAGATGC-------GGCTC-ATTGTGAG--TTGCGAGAACAAATTGTACTCTGCTAATTGTTCTAG------CGAATCCAAATGGGTACG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7769380 176 - 33334924 TTATGGTATTAGTGACAAGAA-----GAGCCTCCGGGGCTAAGTCCAT--------------------------------CCTC-TCACATTTGCTTGTTCGCTCATC---ACTGCGAAAAGTCAAGAGCTATTGCAAACATACAGAAGC-------GGCTC-ATTGTGAG--TTGCGAGAACAAATTGTACTCTGCTAATTGTTCTAG------CGAAT-CGAATGGGTACGT-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3497237 174 +  4147112 TTATGGTATTAGTGACAAGGA-----GAGTATTT-AGGTTAGGTCCAT--------------------------------CCTC-TTCCATTTGCTTGTTCGCTCATC---ACTGCGAAAAGTCAAGAGCTACTGCAAACATACAGAAGC-------GGCTC-ATTGTGAG--TTGCGAGAACAAATTGTACTCTCCTAATTGTTCTAG------CGAAT-CGAATGGGTACG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   453337 179 -   823664 TTCTGGTATTAGTGACAAGAA-----GGACCT---AATGAGAGccccc--------------------------------ccGT------TTTGCTTGTTCGCTCATC---ACTGTGAGAAGTCAAGAGCTATTGCAAACATACAAAAGCCGGGCAGGGCTT-ATTCTG----TTGCGAGAACAAATTGTACTCTGCTGATTGTTTTAGGCGAATCGCAT-CGAATAGGTACG-T
i caeJap4.Scaffold18194 I 648 I 968

a score=-7303.000000
s ce10.chrX              5212927 37 + 17718866 ACGTCCATCTTCTCCTTCTCCTTCATCTCA------------AAGTTGA------------
s cb4.chrX              10555660 23 + 21540570 ---TTCACT-----------------------------------GTTGATcgtaagagaga
i cb4.chrX              C 0 I 201
s caeRem4.Crem_Contig0   2031219 34 -  4500979 ---TTCTTC---GTTTTCTCC---------------------GAGTTGATCGCAAGCAAGg
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold629   7769556 47 - 33334924 CC-TCCTCTTttgctttctctctc-tctctctttctgtgcGATAGTTGA------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3497411 23 +  4147112 ---TCCTCTTTAGTTTTCT-----------------------GAGTTGA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   453516 968 -   823664 I

a score=101990.000000
s ce10.chrX              5212964 626 + 17718866  
s cb4.chrX              10555884 549 + 21540570  
i cb4.chrX              I 201 C 0
s caeRem4.Crem_Contig0   2031256 585 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold629   7769603 554 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3497434 584 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   453516 968 -   823664 I

a score=76492.000000
s ce10.chrX              5213590 171 + 17718866 CT----------CGCCCTCTCCA-TAACTCT-TATGT-GTTGCC--AATGATGCAAA---AATGAATTTGTAACATTTGAGCTCTGTTATCA---------ACCTCGTAAACGGA---GAAAATTGATTAG--ACACACACAGATGGTCATAATT--------GACACACAGTCTCACACATTTGCCGCGGTTTT---TATCTTTCACG-----------------TTTCA
s cb4.chrX              10556433 195 + 21540570 CTCAAACCAACCCACCTC--------TTTTC-TCAGT-GTTGCCAGAATGAtgcaaa---aattaatttgtaACATTTGAGCTCTgttatcagtt--ttttctctCGTAAACCGACGCGAAAATTGATTAGACACACACACAGATGGTCATAATCGGGCGACTGGCGCACATT--------TGCGTC-CCGTTTTTCGTATTCTTCACA------------GGGTTTCGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2031841 165 -  4500979 CT------------CTTC--------ACTCT-TTAAC-GTTGAC--AATGatgcaaa---aatgaatttgtaaCATTTGAGCTCTGTTATCGATGAAGAAAACCTCATAAACGAG---GACAATTGATTAG----ACACACAGATGGTCATAATC--------GGCATACACT--------TTTGCC-CCGTTTT---CACTCTTTCCA------------ATTTATTGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7770157 183 - 33334924 CT----------TCCCCT--------ACTCC-TCAATAGTTGCC--AATGatgcaaa---aatgaatttgtaACATTTGAGCTTCGTTATCATTGAATGAAACCTCATAAACCGG---GAAAATTGATTAA--ACACACACAGATGGTCATAATC--------GGCATACGCGT-------TTTGCC-CCGTTTT---CACTCTTCacgtctctttctctcattttcttca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498018 178 +  4147112 CT----------CTCCAC--------ACTCT-TAAGT-GTTGCC--AATGatgcaaa---aatgaatttgtaaCATTTGAGCTCTGTTATCAATAGA-GAAACCTCATAAACCGG---GAAAATTGATTAG--ACACACACAGATGGTCATAATC--------GGCATACGCac------attttct-ccgtttt---cacTCTTCACG----TTTCACTGTTTTACACCG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   454484 167 -   823664 CT----------TTCTCTTTTCATTCACTCTGTCTTT-TCTGAC--AATGATGCAAATTTGTTGGAAATGTAACATTTGAGCTCGGTTATCAGTGGA-CAAGGCAcataaaacgt---gaaaattgaTTAG----GCACACAGATGGCCG-------------AGCAGGCAG---------TTTTTC-GCGTTTT---TGCTTTCCACG-----------------TTTCA
i caeJap4.Scaffold18194 I 968 I 963

a score=34459.000000
s ce10.chrX              5213761 127 + 17718866 ATCGAAATATCGGAAAGGCCAATGTGATGTGTGTTCTTAGATCTTCCTTGCTTTCCTTT--ACTCATGGGTATCAGGTATCACCGAATCCC----AAAATGATATCATACATAGTGATGCAATTTTCCAGCTT
s cb4.chrX              10556628  99 + 21540570 ATGG-------------------GTGATGTGTGTTCTTagatctttttcttcttcttcttcactcgTGGGTATCAGGTAT---------CC----ACAGTGATATCACCT--TGTGATGCAATTTAtcatctt
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   2032006 112 -  4500979 ACCGATA--GGAAAAACGCCGTTGTGATGTGTGTTCTTAGATCTTCTCCCCCCTTCGATT-ACCCATGGGTATCAGGTAT---------CC----CGAGTGATATCATCT----TGATGCAATTTGACCAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7770340 105 - 33334924 atcgGTC-GGAAAGGGGGTCGATGTGATGTGTGTTCTTAGATCTTCCCCTTCT--------ACCCATGAGTATCGGGTAT---------CC----TGAGTGATATCATCG----TGATGCAATTGACCact--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498196 107 +  4147112 ACCGGTC--GCAGGAAGGCCATTGTGATGTGTGTTCTTAGATCTTTCCCATA---------ACCCATGGGTATCAAGTAT---------CCCGAGTGGGTGATATCATCG----TGATGCAATTGACCAGT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I

a score=2969.000000
s ce10.chrX              5213888 11 + 17718866 GAGTATTTTGT
s caeRem4.Crem_Contig0   2032118 10 -  4500979 -AGTTTTAtgt
i caeRem4.Crem_Contig0  C 0 I 78
s caeSp111.Scaffold629   7770445 10 - 33334924 -atttttgtgt
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498303 10 +  4147112 -AGTTTTGCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e cb4.chrX              10556727 30 + 21540570 I

a score=32.000000
s ce10.chrX              5213899  9 + 17718866 ----------ATTATTGCG
s caeSp111.Scaffold629   7770455 17 - 33334924 tttcaaaatgattatt--a
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498313 17 +  4147112 TGGAAAATAGATTATT--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e cb4.chrX              10556727 30 + 21540570 I
e caeRem4.Crem_Contig0   2032128 78 -  4500979 I

a score=-7533.000000
s ce10.chrX              5213908 58 + 17718866 --GTTTCATTGACTT-TTGCAAATACGAGTTTTCT--------TCCATATGTTAGTT---CG-CA-----CAAGAGT--T
s cb4.chrX              10556757 76 + 21540570 --TTTTGactgtctt-tcaaaaatattatctCTCTGAGCAGGTTACGGTAACTGGTTGTCCGTCAATTTCGAAGaacaa-
i cb4.chrX              I 30 C 0
s caeSp111.Scaffold629   7770472 67 - 33334924 GTATTAAATCATTTCATCAACAACATTATT----TGATCA---TCCATCTGCCATTTGGTTG-CAATT--AGAGAAG---
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498330 59 +  4147112 GTTTCATAATCTCTTATCAATAACACAAAT-------------ACCCTTTACCAGTTATCTG-CAAC----GAGAAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e caeRem4.Crem_Contig0   2032128 78 -  4500979 I

a score=52406.000000
s ce10.chrX              5213966 179 + 17718866 AATAGATTTCAA---ATGGTTTCACTTCCTTGCAC---ATCCTCGGCTCCTGGTGCCCTGAGCAAACAG-----AAAA--CTTTGAAAC----TTGACTATAATACGGCAACGC-ATTGCCAACAATACAGTGTGCTTGTTGACGCGCTTTCCCC--------TTTTCTCCTGTAG-AGATTTTTGGCTTT---TTTTTCAACAATTGA
s cb4.chrX              10556833 165 + 21540570 aatagttt-------ttgagtttattCCCTC------GAGCTCT-GCACCTGGTGTCTTAAACAAATAgtgaaaaaacgtttttgaaaa----ccaactATAATACGGCAACGCATTTGCCAACAATACTGTGCGCTTGTTGACGCTCTTTG-----------ACTTCTCCTTTGA-AA-----------T---GTATTCGACAATAGA
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   2032206 180 -  4500979 ATTGGTTTT---G--TTGGGTTTGCCTTCTTCTCCGGGAGCTCTGGCACCTGGTGCccaaaacaaatag-----aaaagtttttgaaaa----ccaacTATAATACGGCGTTGCATTTGCCAACAATACAGTATGCTTGTTGACGCTCTTGgttctttttactttttcttctctaa-aG-----------C---TCTTCCAACAATAGA
i caeRem4.Crem_Contig0  I 78 C 0
s caeSp111.Scaffold629   7770539 167 - 33334924 AACTGTTGCTCGG--TTTGGTTTGCTTTCTT-CACGGGAGCTCTGGCACCTGGTGCCCAGaacaaatag-----aaaagttttcCAAAACCACCCAACTATAATACGGCA-----TTCGCTCACAA-------TGCTTGTTGACGCTCATCATTC--------G---CTCTTCTACGTG-----------TTTAGTTTTTAACAATAGG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498389 172 +  4147112 AACTGTTGCCAAGTTTTTGGTTTGCTTTCCT-CACGGGAGCTCTGGCACCTGGTGCCCTGAGCaaatac-----aaaactttttgaaaa----ccaactATAATACGGCG-----TTTGCCAACAATACAGTGTGCTTGTTGACGCTCATCATTC--------GTCTCTCTTCCAACAG-----------T---AGTTTCAACAATAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I

a score=-188.000000
s ce10.chrX              5214145 9 + 17718866 GCGGTTTCC-
s caeRem4.Crem_Contig0   2032386 9 -  4500979 -CGGGTTTCT
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold629   7770706 9 - 33334924 -TTGTCCTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498561 9 +  4147112 -CAGTTCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e cb4.chrX              10556998 46 + 21540570 I

a score=-1376.000000
s ce10.chrX              5214154 39 + 17718866 CACATATGATCTCGGCCAGACACAATCCGAAAGTGCTTG
s caeSp111.Scaffold629   7770715 38 - 33334924 TTGTtggctttttttctccacaC-ATTCATAATAGATTG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498570 36 +  4147112 TTGTCGGTTCTTTATCTTCACAC-GTTTGCATTTG--CA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e cb4.chrX              10556998 46 + 21540570 I
e caeRem4.Crem_Contig0   2032395 37 -  4500979 I

a score=-1878.000000
s ce10.chrX              5214193 11 + 17718866 ----CTGCACGACTA--
s caeRem4.Crem_Contig0   2032432 12 -  4500979 ----ctacac-aataTA
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold629   7770753 14 - 33334924 TCGTGTCTAC-AGTA--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498606 13 +  4147112 TCGTAT-TAC-ATTA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I
e cb4.chrX              10556998 46 + 21540570 I

a score=-12670.000000
s ce10.chrX              5214204 68 + 17718866 CTATTTTGATGTT-----CCATTCATATGTTAATAAATG-GTC-TCTGATTTC----------------------------CGAATGACCATTG-AAGTCTTCT
s cb4.chrX              10557044 88 + 21540570 CTATTTTGTTATC-------ATTAATATGATAATCAGCT--TC-TTTGCATATGGTCTATGATCAAAACCCAAATCACCCTTCGATATtcattt------gttc
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   2032444 79 -  4500979 CCGTATCATTTGT-------ATTCATATGCTAATCACTC--TCATTTACATGT----------------CCCTGTTGGCGGTCGACAATCATTTTATCTCTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7770767 73 - 33334924 -TATGTCTATTGTTATCTTTATTCATATGTAAATTATTCAGTC-TTTGATTGT---------------------CTTGTGCTGTATGATCATTC--------CG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3498619 44 +  4147112 -TTCATTAATCGT----------------TGACCTATTTTATC-ATTGTTTGT--------------------------------Tgatcatcc----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454651 963 -   823664 I

a score=260934.000000
s ce10.chrX              5214272 1082 + 17718866  
s cb4.chrX              10557132  937 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2032523  989 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold629   7770840 1031 - 33334924  
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0       3498663 1038 +  4147112  
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194   455614 1027 -   823664  
i caeJap4.Scaffold18194 I 963 C 0

a score=-9768.000000
s ce10.chrX              5215354 25 + 17718866 TTGTTGT-------------TTCCGGAAATGTGAAATA
s cb4.chrX              10558069 20 + 21540570 ---GCCTAA------AGAAATTC-----AGGTTA----
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold629   7771872 20 - 33334924 CATTCTT-------------CTC-----ATATAAAACt
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       3499712 20 +  4147112 CAGTTCT-------------TTC-----AAATTATACT
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194   456641 21 -   823664 -------catttgagaaaaattt-----agatA-----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2033512 23 -  4500979 I

a score=115009.000000
s ce10.chrX              5215379 497 + 17718866  
s cb4.chrX              10558094 451 + 21540570  
i cb4.chrX              I 5 I 32
s caeRem4.Crem_Contig0   2033535 474 -  4500979  
i caeRem4.Crem_Contig0  I 23 I 85
s caeSp111.Scaffold629   7771892 506 - 33334924  
i caeSp111.Scaffold629  C 0 I 9
s caePb3.Scfld02_0       3499732 506 +  4147112  
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18194   456662 486 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=2388.000000
s ce10.chrX              5215876 9 + 17718866 TCTGCGCTC
s cb4.chrX              10558577 9 + 21540570 ttttctttt
i cb4.chrX              I 32 C 0
s caeSp111.Scaffold629   7772407 9 - 33334924 TTTGCGCTC
i caeSp111.Scaffold629  I 9 C 0
s caePb3.Scfld02_0       3500247 9 +  4147112 TCTGCGCTC
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18194   457148 9 -   823664 ACAACattc
i caeJap4.Scaffold18194 C 0 I 31
e caeRem4.Crem_Contig0   2034009 85 -  4500979 I

a score=-1592.000000
s ce10.chrX              5215885 6 + 17718866 TTTTGC--
s cb4.chrX              10558586 8 + 21540570 tgcctcGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   7772416 6 - 33334924 CGCTTC--
i caeSp111.Scaffold629  C 0 I 19
s caePb3.Scfld02_0       3500256 6 +  4147112 CCGTCC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   457157 31 -   823664 I
e caeRem4.Crem_Contig0   2034009 85 -  4500979 I

a score=-1007.000000
s ce10.chrX              5215891 24 + 17718866 AATTTGAGATGTAGGAGATTCATG
s cb4.chrX              10558594 15 + 21540570 --------ACATCGTAAA-GCACC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3500262 20 +  4147112 --GCTGACACATCGTAAA-GCAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   457157 31 -   823664 I
e caeSp111.Scaffold629   7772422 19 - 33334924 I
e caeRem4.Crem_Contig0   2034009 85 -  4500979 I

a score=819.000000
s ce10.chrX              5215915 3 + 17718866 TTT
s cb4.chrX              10558609 3 + 21540570 TTT
i cb4.chrX              C 0 I 17
s caeJap4.Scaffold18194   457188 3 -   823664 ttt
i caeJap4.Scaffold18194 I 31 C 0
e caePb3.Scfld02_0       3500282 0 +  4147112 C
e caeSp111.Scaffold629   7772422 19 - 33334924 I
e caeRem4.Crem_Contig0   2034009 85 -  4500979 I

a score=-5322.000000
s ce10.chrX              5215918 40 + 17718866 --TTTTTCTTCA---TTTCCCAATAAAAATATTTATAAC----------------AGACAC
s cb4.chrX              10558629 58 + 21540570 ---TTTTgctaaaattttgcaaaagatCATTTGCCAAAATAATGtgttctttttcaaatat
i cb4.chrX              I 17 I 3
s caeSp111.Scaffold629   7772441 45 - 33334924 --CCTTCCCTCA---TTCCCCAAAGACGTTTTGCATcaa-----------gattcaaaatt
i caeSp111.Scaffold629  I 19 I 1
s caePb3.Scfld02_0       3500282 42 +  4147112 ---CTTTGCTTA---T--CCCAAGagaattttgcaaaac-----------ttttcaaactt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   457191 40 -   823664 tctcttttctc----ctCGCGAAACACCttttt-----------------ttATTGAACAT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2034009 85 -  4500979 I

a score=-40212.000000
s ce10.chrX              5215958 448 + 17718866  
s cb4.chrX              10558690 409 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2034094 429 -  4500979  
i caeRem4.Crem_Contig0  I 85 C 0
s caeSp111.Scaffold629   7772487 362 - 33334924  
i caeSp111.Scaffold629  I 1 C 0
s caePb3.Scfld02_0       3500325 444 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   457231 405 -   823664  
i caeJap4.Scaffold18194 C 0 I 79

a score=-6100.000000
s ce10.chrX              5216406 28 + 17718866 TGT-CCATAACG------TA------------TGCATGGATAATTT--------A
s cb4.chrX              10559099 35 + 21540570 TTCCTGACAACTGGTAACCA------------ACTCTGAATGTTTT--------C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2034523 33 -  4500979 ----CGATAGCT------Cg------------atttcgattattttttgatttcc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7772849 41 - 33334924 TATTCAATCATT------TCGAGTCGTTTGCAACCTGAATTACTTT--------C
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3500769 29 +  4147112 TGCTTCATAATC------TC------------ATCTCAAGTATTTG--------C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   457636 79 -   823664 I

a score=83664.000000
s ce10.chrX              5216434 344 + 17718866  
s cb4.chrX              10559134 398 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2034556 504 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold629   7772890 493 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3500798 500 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   457715 469 -   823664  
i caeJap4.Scaffold18194 I 79 C 0

a score=-6287.000000
s ce10.chrX              5216778 33 + 17718866 -----CTCTTACACATTAGAAGACACTAGCCAAATATT
s cb4.chrX              10559534 22 + 21540570 ---------------CCTTGATACAGAAGTCAT-CATT
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold629   7773383 20 - 33334924 -----------------AGGGCATACATGTTGA-TATA
i caeSp111.Scaffold629  C 0 I 116
s caePb3.Scfld02_0       3501298 15 +  4147112 -----------------------CATTTGCCAAGTATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   458184 38 -   823664 TTGGCTTGTGAGAGACTTGAGTTGGTTGGCCAAATATA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2035060 45 -  4500979 I

a score=-1558.000000
s ce10.chrX              5216811 5 + 17718866 AATGA
s cb4.chrX              10559556 4 + 21540570 -AACG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3501313 2 +  4147112 ---AT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   458222 5 -   823664 ACTGA
i caeJap4.Scaffold18194 C 0 I 928
e caeSp111.Scaffold629   7773403 116 - 33334924 I
e caeRem4.Crem_Contig0   2035060 45 -  4500979 I

a score=-1081.000000
s ce10.chrX              5216816  8 + 17718866 ACCACGAG----
s cb4.chrX              10559560  8 + 21540570 TCTACTCA----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3501315 12 +  4147112 TTGACGCAGGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   458227 928 -   823664 I
e caeSp111.Scaffold629   7773403 116 - 33334924 I
e caeRem4.Crem_Contig0   2035060 45 -  4500979 I

a score=1077.000000
s ce10.chrX              5216824 37 + 17718866 ----------TGTCTCATTTTACGGCGA-------------ATGC----ATATTTCTGATTTGA
s cb4.chrX              10559568 49 + 21540570 ----------TAC-TCATTATTCTACAAACCTACATACAATATGC----TTATCGCTGATGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2035105 37 -  4500979 ----------TACATCGTCATGTCGCAA-------------ATGC----ATATTTCCAATGTTA
i caeRem4.Crem_Contig0  I 45 C 0
s caePb3.Scfld02_0       3501327 57 +  4147112 TATCTACCTATAT-TCATTATTCTACAA------CTTCAATATGCACCATTATGTCTTGGTTGA
i caePb3.Scfld02_0      C 0 I 67
e caeJap4.Scaffold18194   458227 928 -   823664 I
e caeSp111.Scaffold629   7773403 116 - 33334924 I

a score=-275.000000
s ce10.chrX              5216861 69 + 17718866 TAACTATCCTAGAACTTCC--ATACTTGTGGGACACGTTTAAAGTTAGTAAGAAAAA-----TAATTTAAAACTTG
s cb4.chrX              10559617 74 + 21540570 TTGCTCTTTTGAGAGCCCA--ATATTCATTTAATGCGTTTCAAGTAAGATCACAAATTATAGCAGCTCATAGTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2035142 73 -  4500979 TCATgcttttgaaatatcaatatATTCACT--ATAGACTGAAAGTAAGAATCCGAAATTTC-CAATGTATACATTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3501384 67 +  4147112 I
e caeJap4.Scaffold18194   458227 928 -   823664 I
e caeSp111.Scaffold629   7773403 116 - 33334924 I

a score=-3440.000000
s ce10.chrX              5216930 5 + 17718866 GTGTT---
s cb4.chrX              10559691 5 + 21540570 --TCCAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2035215 5 -  4500979 --GTCAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3501451 5 +  4147112 ---GCTCT
i caePb3.Scfld02_0      I 67 C 0
e caeJap4.Scaffold18194   458227 928 -   823664 I
e caeSp111.Scaffold629   7773403 116 - 33334924 I

a score=-9495.000000
s ce10.chrX              5216935 21 + 17718866 ----CGGTCAATTTTCAAATAT---------GCT
s cb4.chrX              10559696 26 + 21540570 AA-TCAACG-CTATAAAAACATGAT------TCt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2035220 21 -  4500979 AAGTCATCT-CAATCCTAATGT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7773519 25 - 33334924 ----CTGTC-ATTTTGAGTTATAAAGG----TTT
i caeSp111.Scaffold629  I 116 C 0
s caePb3.Scfld02_0       3501456 29 +  4147112 ----CTGTC-AAATTCGATTATgaatttctcttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   458227 928 -   823664 I

a score=706193.000000
s ce10.chrX              5216956 1750 + 17718866  
s cb4.chrX              10559722 1691 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2035241 1705 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7773544 1645 - 33334924  
i caeSp111.Scaffold629  C 0 I 3927
s caePb3.Scfld02_0       3501485 1667 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   459155 1801 -   823664  
i caeJap4.Scaffold18194 I 928 C 0

a score=29344.000000
s ce10.chrX              5218706 344 + 17718866 ------CCCTCAACACAA--CCAGTC---CCGTT-TAACTTTTTTTTTCTTCAAAAAATTGGTTTATTTTCCTCTCTCTCTCATTTAATTGTATGCTAATCGAGTGTC------TAATGTTGTATACCCCGTCATTTCTCATT-----TTCTTTCACTCT--------CTTCTCTTTTTATCAA---------TTCTTTAATTAC----------AT--------CCATCAAAACTCCCATCCCT------------------CCTCCACGTACCCGCT----TTTTTTTCTCATCTCAG---AAAAATTCTAAAACATTC-AAAATGATATTCATTTCAAAAACATTCACGA-----------TTT--TCTCTGTT-----GATAAAAGTCATTGAATTCTCT------GTTCTG--TTCAGGG--TTGAACATGGTTTTTATTG-TACAATAAAG
s cb4.chrX              10561413 385 + 21540570 ---------------cat--TTAGTATGCTCATTGTGGCTTGTTTCAACTC----------GTTTACTGATTTA-------CACCAAAAACCAT-TTTATCCAGTGTC------TATTG-----TACCCTGTCTCTGTTTGCTCCCAACCCATCCCAACTTATCCATGAACGTCTATCTTCTCT---------ATTtgtcattat--tttcagaaat--------gtatgtcgatttttttccccAGAAAAATCCCGTCCATCCCTCAACTTACccgctt---ttcttttctcatctcag-aaaaaaattctaaaacattcaaaaatgatattcatttcaaaaacattcacGAATCCTTCacattttgtctttttttcattgaatgaAAATCGTTTGATTCTCTGACCAAGCTTTA---TCAGGGCTctcattttggtttttcttcaaataatAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2036946 315 -  4500979 ---------------CATCGTCGGTA---TCATT-TAGTTGATTTCA-----------------TACTG---------------------------TAATCGAGTGTT------CACTC-----ATCCCCGTCTTT------------TCCTTTccaaat--------aatttctttttttttc---------atttttaatttc--gttttGAAATTAAACCACTTTCTTCAATGTTTCTTTCTCGAAA-------------TTCTAAATTACCcgctt---ttcttttctcatctcag---aaaaactctaaaacattc-aaaatgatattcatttcaaaaacattcacGACTTTTTA----TTTGTCTTTTGTT-----AGTAAAGATCATTTGATTCTCT------GCTTTAATTTCAGGG--CtgattttggtttttattCGCACAATAAAG
i caeRem4.Crem_Contig0  C 0 I 2295
s caePb3.Scfld02_0       3503152 315 +  4147112 -------------CCCA---TCCGTA----CATT-TGACGTACTTTT-----------------TATTC---------------------------TAATCCCGTGTCCCATTTCATTC-----TACCCTGTCTTT-TTTGC------ACCATTCAATtt--------gtcgtcttcttctccttctcagccaaatttcaatttcatgtttcgaaat--------acattt-aatttttttcactc---------------tcctCCAATTTACccgcttttcttcttttctcatctcagaaaaaaaattctaaaacattc-aaaatgatattcatttcaaaaacattcacgA----------------CTTTTGTG-----AATGAAAATCATTGGATTCTCTG-----ATTTTA---TCAGGG--CTGATGTTGGTTTTTATTT-TACAATAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   460956 327 -   823664 caaaatcACCCACTCCGTCTTCTgta---ctttt-tcttctttttttaatt-----------ttcatttctCTG----------------------CTATTCGCTGTA-------ACTG-----AACTGTGCTTGT-CATGTAAA---GAAATTGAATAT--------CTACCCATCTCCTCTC---------ACCCTCACTCTT-----TTAAagt--------ccttct-tcttcttcttctt------------------cttcttctcatccgctt---ttcttttctcatctcaG--AAGAAATTCT--AACATTC-AAAATGatattcatttcaaaaacattcacgattttcaactattttttttcgagtt-----ggTG-AGGTCAATGAAACCTCT------GTATGT---ACAGAG--CTGAATTTGATTTTTACTT---CAATAAAG
i caeJap4.Scaffold18194 C 0 I 1798
e caeSp111.Scaffold629   7775189 3927 - 33334924 I

a score=-223.000000
s ce10.chrX              5219050 7 + 17718866 ATAACTT
s cb4.chrX              10561798 7 + 21540570 ATGATTT
i cb4.chrX              C 0 I 4352
s caePb3.Scfld02_0       3503467 3 +  4147112 ATA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461283 1798 -   823664 I
e caeSp111.Scaffold629   7775189 3927 - 33334924 I
e caeRem4.Crem_Contig0   2037261 2295 -  4500979 I

a score=663.000000
s ce10.chrX              5219057 20 + 17718866 CCGATTTTCCATACATTTTG
s caePb3.Scfld02_0       3503470 14 +  4147112 ------TTATGTACATTTTG
i caePb3.Scfld02_0      C 0 I 19212
e caeJap4.Scaffold18194   461283 1798 -   823664 I
e cb4.chrX              10561805 4352 + 21540570 I
e caeSp111.Scaffold629   7775189 3927 - 33334924 I
e caeRem4.Crem_Contig0   2037261 2295 -  4500979 I

a score=0.000000
s ce10.chrX              5219077 15521 + 17718866  
e caePb3.Scfld02_0       3503484 19212 +  4147112 I
e caeJap4.Scaffold18194   461283  1798 -   823664 I
e cb4.chrX              10561805  4352 + 21540570 I
e caeSp111.Scaffold629   7775189  3927 - 33334924 I
e caeRem4.Crem_Contig0   2037261  2295 -  4500979 I

a score=445.000000
s ce10.chrX              5234598 12 + 17718866 TTCAGTTTCTGT
s caeJap4.Scaffold18194   463081 12 -   823664 ttgagcTTCTTC
i caeJap4.Scaffold18194 I 1798 C 0
e caePb3.Scfld02_0       3503484 19212 +  4147112 I
e cb4.chrX              10561805 4352 + 21540570 I
e caeSp111.Scaffold629   7775189 3927 - 33334924 I
e caeRem4.Crem_Contig0   2037261 2295 -  4500979 I

a score=1831.000000
s ce10.chrX              5234610 26 + 17718866 -AAACATTAGTTCAAACAAGAGCAAAA
s caePb3.Scfld02_0       3522696 24 +  4147112 -aaatattcattcataCAAGAGCAA--
i caePb3.Scfld02_0      I 19212 C 0
s caeJap4.Scaffold18194   463093 27 -   823664 GAGAAACCATTTGAAACaaggagaaaa
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10561805 4352 + 21540570 I
e caeSp111.Scaffold629   7775189 3927 - 33334924 I
e caeRem4.Crem_Contig0   2037261 2295 -  4500979 I

a score=-667.000000
s ce10.chrX              5234636 13 + 17718866 CAAATGGCAATAA-
s caeSp111.Scaffold629   7779116 12 - 33334924 CAATTGACAA-AG-
i caeSp111.Scaffold629  I 3927 C 0
s caeJap4.Scaffold18194   463120 12 -   823664 -aaatg-caataca
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3522720  0 +  4147112 C
e cb4.chrX              10561805 4352 + 21540570 I
e caeRem4.Crem_Contig0   2037261 2295 -  4500979 I

a score=1969.000000
s ce10.chrX              5234649 46 + 17718866 TTTATTTTATCTTTTGCACAGCAATCCGTTTAACTGGTTG--TAATAC
s caeRem4.Crem_Contig0   2039556 40 -  4500979 tttattttaacaatttt------atcCGTTTAACTGGTTT-CATATA-
i caeRem4.Crem_Contig0  I 2295 C 0
s caeSp111.Scaffold629   7779128 42 - 33334924 tttattttaatgaaatga----aatgcgGTAAACTGGAGA-CTAACA-
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3522720 28 +  4147112 TTTAT------------------ATCCGTTTAACTGGTTT-CTGTTA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   463132 41 -   823664 TTTATTCGACATTTTCAA-----ATCCGTTTAACTGGTTTTCTAAC--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10561805 4352 + 21540570 I

a score=-23677.000000
s ce10.chrX              5234695 169 + 17718866 ACCCGTTGTTGTAGTTTGAGAAAAAAATACAATACATAATCAAAATGCG--ATGGCA---------GCAA--------------------AGAATCTGGATTTAGAAAT---GA-----T---AATAGACTAGAAAATCATATTTAGCA---AATG------TACTGAGTTTGAGTA--GATTTACGCTAGTTGTACACCGAGTT------------------------------------------GGA-AATAATTGATAAGG
s cb4.chrX              10566157 208 + 21540570 ACCCGTCGATTAGTTTGGCGGCAAA-ATACAATACATAGT-AAAATGCAAAATGGCA---------TACA------------------ATAGAATTTCGATTCACAAACATCGT-----T-------GActagattttgaaactgaGCATTGATTGGA--CAGGACAAGTTTGGATG--AA--------AATTTGACACCGAGATGAGTTAGGAAATTTG----AACATGATACAAAATAAGTCCGAGAAGGAGAATGACTCTGG
i cb4.chrX              I 4352 C 0
s caeRem4.Crem_Contig0   2039596 196 -  4500979 ACCCGTCTCTTTGTTTAGAGGGCAA-----AATACATAGT-AAAATGCAGAATGGCAGCAGAATATTCCA------------------ATAGAA----AACATACAAATA--GA-----T-------GACTAGATTC--ACATTGAGCAT--ACTGG-----GAGAAAGGTTGAGTA--GAGTTGCAATAATGTAACACcgagtt-----------tttg----aacttgagACTATAGTGGTTTGGGGA-AAGTTTACATATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7779170 182 - 33334924 ACCCGTTA-ATAGCTTGGTGGGCAAAATACAACACATATT-GAAATGCAG-ATGGCA---------TCGA--------------------AGAATTTCGAG----AGTTT--GAAGGTTT-------GACTAGAT--------TGAGCATT-AATAAC--AGGGATGACTGTGAGTAGTTA--------AGTATAACACCGagtt-----------tttg---taattttga---aCGTTGGG-TGGGGG-GATACAAAGTATAA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3522748 174 +  4147112 AcccgtaattttttttggggggcaAAATACAAAACATAGT-AAAATGCAA-ATGGCA---------TCCA--------------------TGAAT----------AAATC--GA-----T-------GACTAGAT--------TGA----T-ATTGGA--GGGGAAGGGGATGACTA-TTA--------AGTTTTACACCGAGTT-----------CTTAAGTTAGTTTTAAAATACATGGGGATGCGAG-GTTTCACGTTATGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   463173 190 -   823664 ACCCGCACGTGAAGAAAGATGGCAAAATACAACAT----T-AAAATGCAA-ATGGCA---------TCCATGaaacacaaacaaaaaaaaagattttagataaaagaataaaaa-----taaaaacagactagactt--aaaatgagcataaatTCGAACAGGGAAGAGGGTTTTCG------------ATTTGTACAACGA--T-----------TTTG----AACAAGAGTTGAAAAAG------------------------
i caeJap4.Scaffold18194 C 0 I 69

a score=-16303.000000
s ce10.chrX              5234864 57 + 17718866 --------------AACATTTCTCAAAAAT--TGGATAAAGATGAAAACAAAAATATA----TGCTTTAACAACA---------GG
s cb4.chrX              10566365 71 + 21540570 ---GGAAGTATGAGAAT-------GATAATaaccaaaataattgaaagtAAAAATGTGAGTAAATTTGAACAGCT-----TAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2039792 77 -  4500979 CACATAAAtgagataatttttttaaatagt-actaaaataattgaaa-taaggAGGAAGCTCTTCTTTGACAAGT-----AATT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7779352 60 - 33334924 -----AATCCgca----------aattaat----aaaataaacaaCAATAGACACCTA-------GAAGACAAGTAGAATAATAAC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3522922 62 +  4147112 -----AGGTTGGACACT----ATAAATAat--ccaaaataatcaaaaata---agctA-------TTCGACAAGT---ATGATCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   463363 69 -   823664 I

a score=383994.000000
s ce10.chrX              5234921 627 + 17718866  
s cb4.chrX              10566436 641 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2039869 631 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7779412 628 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3522984 634 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   463432 636 -   823664  
i caeJap4.Scaffold18194 I 69 C 0

a score=5152.000000
s ce10.chrX              5235548 6 + 17718866 CTGAAA
s cb4.chrX              10567077 6 + 21540570 ctgaaa
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   2040500 6 -  4500979 ctgaaa
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold629   7780040 6 - 33334924 CTGAAG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3523618 6 +  4147112 ctgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   464068 0 -   823664 C

a score=-1639.000000
s ce10.chrX              5235554 6 + 17718866 CGAATT---
s caeSp111.Scaffold629   7780046 9 - 33334924 ACgaacaat
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3523624 6 +  4147112 tttatt---
i caePb3.Scfld02_0      C 0 I 110
e caeJap4.Scaffold18194   464068 0 -   823664 C
e cb4.chrX              10567083 37 + 21540570 I
e caeRem4.Crem_Contig0   2040506 61 -  4500979 I

a score=695.000000
s ce10.chrX              5235560 21 + 17718866 AAAAATGGTTAT------GTTTTAATT
s caeSp111.Scaffold629   7780055 27 - 33334924 aaaaatgaggatCTAATAGTTTTAATC
i caeSp111.Scaffold629  C 0 C 0
e caePb3.Scfld02_0       3523630 110 +  4147112 I
e caeJap4.Scaffold18194   464068  0 -   823664 C
e cb4.chrX              10567083 37 + 21540570 I
e caeRem4.Crem_Contig0   2040506 61 -  4500979 I

a score=0.000000
s ce10.chrX              5235581 64 + 17718866 TCGCGAAATTATGGCATATAACTTTGAATGAGCATGGTGTTTTACTTGGGAGGTCTCGCCACGA
e caePb3.Scfld02_0       3523630 110 +  4147112 I
e caeJap4.Scaffold18194   464068  0 -   823664 C
e cb4.chrX              10567083 37 + 21540570 I
e caeSp111.Scaffold629   7780082  0 - 33334924 C
e caeRem4.Crem_Contig0   2040506 61 -  4500979 I

a score=-3283.000000
s ce10.chrX              5235645 364 + 17718866 TCTTACTAGGGAAGCGTCTGAAAATGCCTA--ATTTGTTTCTAATTTCTGTCTGACACCACAAC-CGCCCTAGGGAACTGACAGTACTCCATTCTTGCTGCACTGAAGCTCGCCGCAGCTTTCACAGCTTGAATTTTATACTCATCCGTTTCTCAGCTCTCAGCAT-GGGCTTTCAATTGAAACATCTCTCGTTGAAAAGACCGGTTTTACCTTCAGACCCTTTCTTAGCCAGTTATACTGGCTGCTTCAAGTGACAAGTTTCACAGATTTGTTAATTAGAAGTGAAGTTGACTAAATTTGAATGAACAGTAAAAGCCAGGATTAACACAAAGTACTTTGCAGCTAGTTTCACGTTTTTACGAACGAG
s caePb3.Scfld02_0       3523740 209 +  4147112 TCAGAATAACAAAGCTGCTGAAAAGACATACAACTTGTAT---AATCCGAAATGGTACTATAACATGCGCTAGGG-------------------TTGC--CACCAACGTTCG------------------AAACTTTATGA-AATTCGTTACT--------AGCATAGGGTCTTCAATT--------TCTCGTAATACA------------------------TCATAGC-------------------AATTGACAA---TCCCAG-------------------------CTAA---------------------CATGCTTGTC-----GTATTCCCAAGCTCATTTC---TATTGTCAGACTAC
i caePb3.Scfld02_0      I 110 C 0
e caeJap4.Scaffold18194   464068   0 -   823664 C
e cb4.chrX              10567083  37 + 21540570 I
e caeSp111.Scaffold629   7780082   0 - 33334924 C
e caeRem4.Crem_Contig0   2040506  61 -  4500979 I

a score=-55.000000
s ce10.chrX              5236009 4 + 17718866 TCAT
s caeSp111.Scaffold629   7780082 4 - 33334924 TCTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3523949 2 +  4147112 --TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   464068 0 -   823664 C
e cb4.chrX              10567083 37 + 21540570 I
e caeRem4.Crem_Contig0   2040506 61 -  4500979 I

a score=1910.000000
s ce10.chrX              5236013 2 + 17718866 AC
s cb4.chrX              10567120 2 + 21540570 AC
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   2040567 2 -  4500979 AC
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold629   7780086 2 - 33334924 AC
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3523951 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   464068 0 -   823664 C

a score=112263.000000
s ce10.chrX              5236015 395 + 17718866 CTTTACTCCATCTTGTTAATATATTTGTACAATAGCAACATTGAACCGGCCTTGCTCCTACTGTGAATGGCGTCAGTTCATGAATAGTTTCCTTTCTG--AAAGAAAACG--ATAGAATAAGGCAAAAGGCAC---AAAATAAGCCGT---CCT-ACCCATTAGATTCTCCGTTTGTCGTAGTTTTTCTATCTGATGCATCAAATAATTCAGTTAAATAACTTTTCTGCAACAGTCGGATCATGTCCATGTTAGCAGGATCTCGTTCCGGTGATCTGACGCGTCT-GTTCAAGTGTCGCTCATCAATATCAGTATTGTTCAATTTCGACCAGTCTTCTTCT---TCTTCATAATCCGGGTCAACTAGCTGCTGTTCATGCGAAGCCGGTTCTGAACATT------------TTCAGatatta
s cb4.chrX              10567122 389 + 21540570 CTTTACTCCACCTTGTTAGAATATTTGCACAGTAGTGACATGGTACTGGCCGCGCTCCAGCTACAAATGGCGATAGCTCATGGATAGTCTCTTTGCTGAAAAAGCTGCTA--------------AATATTCAT---TTCTTAAACTGTTAATCTCACCGATTGGC--CTCGGCTGCGTG----CTTCTTTTCATACGAATCAAACAGATCAACTAGGAAGCTCTTTTGCAACGTTGAGATAACATCCATGTGAGCAGGATCTCGTTGTGAA----TAGTTATACACTATCATACTTGGCTCTTGATCATCACTATTGTTGAGGTTAGTCCAGTCTTCTTCGTCATCTTCGAGATCTGGATCCACTAGTTTCCTCTCGTGGTACGAAGAGTCTGTAATTG-----Tttgtttttagatttct-
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   2040569 394 -  4500979 CCTTACTCCATCTTGTGAGAATATTTGCGCAGTAGCAACATTGTACTGGTCTAGCTCCGACCGCAAATGGAGCTAGTTCATGGACTGTTTCCTTTCTG--TAATTCGACG--------------gatatttctgaattcaaaagttgTTAACCT-ACCCATTTGCTTCTCCATtacttgttgttttcttttccgacGCATCGAAcaattcaaccaaaaaactCTTCTGCAACGCTTTGATTGCATTCATTTTTGTCGAGTCCGTCTCTGGAGGCTTGGTGAAAGA--AACGGATTTG--TCTAGGTCTTCAGTGGTGTCCAAATTACTccagtcttct------tcttcacactCCGCGTCAACCAACTTCCTCTCGTGATAAGAGGATTCTGTAGATGGAAATCATGTTATgaataaact-
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold629   7780088 378 - 33334924 CTTTACTCCATCGTGTCAGAATATTTGCACAATAACAGCACTGCACTGGACGAGCTCCAACTGTGAAAGGTGACAGTTCATGGACAACTTCTTTgctg--aaatcaaattaaGTTGAATAC--AGACATTCAA---T-------CTATCTTCCA-ACCCATTGGCATCTCCGTTGcttgtgtttttcttctcggaAGCTTCAAACAAGTCAAccaaaaaggttttttgcagcatttcgattttattc---accgctgaattttttctcggagGTTTGGCGACTTT--CACAAAATTG--TCTTCCGGGTCACTG---TCTATATCGGACCAATTCTCATCG---TCTTCACAATCTGGATCCACTTGTTTCCTTTCGTGGTAAGAGGCGTCTG-AAATC--------------agataatt-
i caeSp111.Scaffold629  C 0 I 18
s caePb3.Scfld02_0       3523953 388 +  4147112 CTTTACTCCATCTGGTCAGTATATTGGCACAGAAACAGCATTGAACTGGACGAGCGCCGACGGTAAATGCAGATAGCTCATGAATTATCTCTTTCCTG--AAATTAGTTT--GCTCACTGA--TGATATTCTA---TCCTTA--CCATTAACTC-ACCCGTTAGCATCTCCGTTGCTAGTAGCTTTCTTCTCGgatgcttcaaaaagttcgatCAAAATACTCTTCTGTAGCATTTTAGTTCTACTCAGGATTGGTGAGTTGGCAGCGGACGACTTGGCCACTCT--CACAAACGGC--TTTTCAGTATCACTGTTATCCAGATCTGACCAATCTTCGTCG---TCTTCACAGTCGGGGTCCACTAGCTTCTGTTCGTGGTACGACgcgtctgaaaatt--------------aaaatatt-
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18194   464068 361 -   823664 CTTTACTCCATCTTGTCAAAATGTTGGTGCAACAGTAGCACTTCACTGGACTCGCGCCAACGTTAAACGGTATCAGTACGTGAACAgtttcttttctg--aaaacaatat-------------ttgttgtatt---ttttta--ctatttatCCCACCCAATATTTTCCGTAGTACTCGTGTTTTTCTTCTCCGACGCTTCGAATAACTCAATCAAAATGCTCTTCTGAAGTGCTTTGATTATGGCTGAAGTATTCGCGTCTCGTTCGCAAGACTTGATTGGCTT--TTTGAAACGG--TTTTGCTCATTGTCATTATCCACACTCATCCACAGTTCC------TCTTCCATATCGGGATCCACCAGCTTTCTTTCATGGTACGCCGATTC-------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5236410 18 + 17718866 tataattttttttaaata
e caePb3.Scfld02_0       3524341 20 +  4147112 I
e caeJap4.Scaffold18194   464429  0 -   823664 C
e cb4.chrX              10567511 16 + 21540570 I
e caeSp111.Scaffold629   7780466 18 - 33334924 I
e caeRem4.Crem_Contig0   2040963 12 -  4500979 I

a score=417517.000000
s ce10.chrX              5236428 660 + 17718866  
s cb4.chrX              10567527 655 + 21540570  
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2040975 653 -  4500979  
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold629   7780484 657 - 33334924  
i caeSp111.Scaffold629  I 18 C 0
s caePb3.Scfld02_0       3524361 664 +  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18194   464429 601 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=4296.000000
s ce10.chrX              5237088 5 + 17718866 ACCTG
s cb4.chrX              10568182 5 + 21540570 ACcta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2041628 5 -  4500979 ACCtg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7781141 5 - 33334924 ACCTG
i caeSp111.Scaffold629  C 0 I 41
s caePb3.Scfld02_0       3525025 5 +  4147112 ACCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465030 0 -   823664 C

a score=546.000000
s ce10.chrX              5237093 1 + 17718866 A
s cb4.chrX              10568187 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2041633 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 23
s caePb3.Scfld02_0       3525030 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465030 0 -   823664 C
e caeSp111.Scaffold629   7781146 41 - 33334924 I

a score=-254.000000
s ce10.chrX              5237094 4 + 17718866 AGAT-
s cb4.chrX              10568188 4 + 21540570 -aata
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3525031 4 +  4147112 AAAT-
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold18194   465030 0 -   823664 C
e caeSp111.Scaffold629   7781146 41 - 33334924 I
e caeRem4.Crem_Contig0   2041634 23 -  4500979 I

a score=478.000000
s ce10.chrX              5237098 34 + 17718866 GTATTTTATAAATGTGAAGTATTAGAAACTTCTC
s cb4.chrX              10568192 33 + 21540570 ataattt-taagATTGAGGAATCGAACAGTTTTC
i cb4.chrX              C 0 I 8
e caePb3.Scfld02_0       3525035 44 +  4147112 I
e caeJap4.Scaffold18194   465030  0 -   823664 C
e caeSp111.Scaffold629   7781146 41 - 33334924 I
e caeRem4.Crem_Contig0   2041634 23 -  4500979 I

a score=0.000000
s ce10.chrX              5237132 421 + 17718866 AAAATTTTGTATTGGGTTTTCATTTCTTTCATTGACTTTCATGGTTTCTCATTGTTCATGGtttttcattggttaatatttcaagaaaaatgatctaatttcagctaaaatcaacaatacggccaattttcccatgtagaagccaacagtcagaatgttgcttttattcaaatattatccgcatagcacattttggttgtttatcacacgttattacgttaactataatacagttatagccgacaggaaaccaaaaatgacaaaaattggttgcctTCAGAAAGACATATAAAGAAAATTCATAATTTTACTAATAGTGTACTTGTTCAGAACGTTGCTTCGGCAGTTGTTTTGGGATTGACTAGCttaattttaaaaaaattaaaaaatCCTAATATAACCAAATATGATAAAAATCTCG
e caePb3.Scfld02_0       3525035  44 +  4147112 I
e caeJap4.Scaffold18194   465030   0 -   823664 C
e cb4.chrX              10568225   8 + 21540570 I
e caeSp111.Scaffold629   7781146  41 - 33334924 I
e caeRem4.Crem_Contig0   2041634  23 -  4500979 I

a score=848.000000
s ce10.chrX              5237553 12 + 17718866 AAAAAATCAAAA
s caeRem4.Crem_Contig0   2041657 12 -  4500979 AAAAGATTAAAA
i caeRem4.Crem_Contig0  I 23 C 0
e caePb3.Scfld02_0       3525035 44 +  4147112 I
e caeJap4.Scaffold18194   465030  0 -   823664 C
e cb4.chrX              10568225  8 + 21540570 I
e caeSp111.Scaffold629   7781146 41 - 33334924 I

a score=418.000000
s ce10.chrX              5237565 3 + 17718866 ACA
s caeRem4.Crem_Contig0   2041669 3 -  4500979 ACT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3525079 3 +  4147112 ACT
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold18194   465030 0 -   823664 C
e cb4.chrX              10568225 8 + 21540570 I
e caeSp111.Scaffold629   7781146 41 - 33334924 I

a score=180.000000
s ce10.chrX              5237568 1 + 17718866 T
s caeRem4.Crem_Contig0   2041672 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7781187 1 - 33334924 T
i caeSp111.Scaffold629  I 41 C 0
s caePb3.Scfld02_0       3525082 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465030 0 -   823664 C
e cb4.chrX              10568225 8 + 21540570 I

a score=3055.000000
s ce10.chrX              5237569 6 + 17718866 ACACAT
s caeRem4.Crem_Contig0   2041673 6 -  4500979 ACCGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7781188 6 - 33334924 ACACAT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3525083 6 +  4147112 ACACAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   465030 6 -   823664 ACGCAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10568225 8 + 21540570 I

a score=543689.000000
s ce10.chrX              5237575 915 + 17718866  
s cb4.chrX              10568233 924 + 21540570  
i cb4.chrX              I 8 I 29
s caeRem4.Crem_Contig0   2041679 962 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7781194 916 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3525089 916 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   465036 863 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-4224.000000
s ce10.chrX              5238490 29 + 17718866 TATTTCCAAACTTTCTAAATTCTCTACCA
s caeRem4.Crem_Contig0   2042641 29 -  4500979 aatgttgaaactttGAACTACTAAGATTA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold629   7782110 27 - 33334924 TATAATCAAGC--AACAACATTCCATTCA
i caeSp111.Scaffold629  C 0 I 3
s caePb3.Scfld02_0       3526005 29 +  4147112 cattgtaaaACTTTTTAACCTTCACAACC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   465899 22 -   823664 --ttttcaaac---aaaatatTGACTC--
i caeJap4.Scaffold18194 C 0 I 2
e cb4.chrX              10569157 29 + 21540570 I

a score=225471.000000
s ce10.chrX              5238519 319 + 17718866 TACCCATTTTATCAAACGACAGTTGTATAGATCCACGATGGGAAGAATGGCTTCGTATCCGACGAGTATCTGTCTTCTTTTTTGTAAAACCTCTAATTGCAGAATTCAAAGTTCCAAACTTGTGACTACCATTTTCAACCACTTTCATGTCTTTTCTGGTGTTATAGAATGCAAAACTGTTGTGCGAATTGGTTTCAATGACTTCTAAGAACTTTTCAATCGCCATATTGTTGATCTCGTCTTCGTCGAATGCAATAATAATTGAAGAAGCACATGATGACCGAATTGATATAATGTGCTCAATTTTCACACCCTGTAA-
s cb4.chrX              10569186 319 + 21540570 TACCTAGCTTGTCGAAACTAATATGGATAGATCCTCGATGCGAAGAGTgacttctgattcttctggcATCCGCTTTCTTTTTGGTAAACCCTCGAAGAGCAGAATTTAATGTGGAGAATTTGAGACTGGTGTTGTCCGCGACCTTTACTTCTTTCCGAATGTTATAGAAGGCAAAGCTGTTGTGTGAGTTGGTCTCAATAAATTCCAAGAACTTCTCTATGCATGTATTACTGATTTCCTCTTCATCGAAAGCAACAATAATTGTAGCTGCACAAGCAGAACGAATTGCAATGATATGCTCGATTTTGATACCCTGTAA-
i cb4.chrX              I 29 I 39
s caeRem4.Crem_Contig0   2042674 318 -  4500979 TACCTATTTTGTCGAACTGAATGTGCACTGAACCACGATGGGAGGAATGACTACGGATTCTACGAGGATCTGTCTTCTTCTTGGTAAATCCTCGTATCGCTGAGTTCAGTGTTGAGAACTTGTGACTGCTGGTGTCCGTAATTGTTTTATCTTTCCTTATGTTGTAAAACGCAAAACTGTTACGGGAGCTACTCTCAATCACTTCCAGAAACTTTTCAATAGCCAAGTTGTTGATTTCATCTTCATCGAAGGCTACAATGATTGTTGCCGCACATGAAGATCGAATAGCAATGATGTGTTCAATCTTCACTCCCT-TAA-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold629   7782140 318 - 33334924 TACCCATTTTATCAAATGATATCTGAACTGAACCCCTATGCGACGAGTGACTCCGCATCTTTCTATtatccgttttcttcttcgtgaATCCTCTGAATGCAGAATTCAACGTGGAGAACTTATGACTGCTGTTATCGGACACTTTCTGATCTTTTCGTAGGTTATAGAATGCAAAACTGCTGTGACAGTTATTCTCAATCACTTCTAAAAACTTCTCAATTGCCAAATTGTTcacttcatcttcatcaaacGCGACTAGAAGAGTGGCTGCACAAGACGATCGAATTGCAATGATATGTTCGATTTTGACTCCCT-GAA-
i caeSp111.Scaffold629  I 3 I 2
s caePb3.Scfld02_0       3526037 318 +  4147112 TACCGATTTTCTCGAAAGATATTTGAACTGAACCACGATGAGACGAATGACTACGAATCCTCCTATTATCTGGCTTCTTCTTTGTGAATCCTCGAATGGCAGAGTTCAGTGTTGAGAACTTATGACTGCTGTTGTCGGTGACTTTCACATCTTTCCGAAGGCTGTAGAATGCAAAACTGTTGTGGCAGTTGTTCTCGATCACCTCCAAGAACTTCTCAATCACCATATTGTTGATTTCGTCTTCATCGAAAGCAACGAGAATGGTGGCGGCGCAGGACGAGCGAATGGCAATTATGTGTTCAATTTTGACACCCT-GAA-
i caePb3.Scfld02_0      I 3 I 22
s caeJap4.Scaffold18194   465923 319 -   823664 TACCCATTTTGTCAAGTGTCAGTTGAATCGAGCCTCGTTGCGACGAACTATTACGAATCCTTCtgttgtcaatttttttcttggtgAGTCCTCGAATCGCCGAATTCAAAGTTCCAAACTTGTGACTGCTGTTATCTGTCACTTTGATTTCTTTTCGAGTACTGTAGAACGCAAAACTGTTGTGACAGTTTGCGTCAATCGTTTCCAAAAACTTTTCAATTATCGTGTTGTTCGTCTCATCCTCGTCAAACGTGACCGTGATTGTGGCAACACATGTCGAGTGGATGGCAATGATATGCTCAATTCTTACACCCT-GAAA
i caeJap4.Scaffold18194 I 2 C 0

a score=-4977.000000
s ce10.chrX              5238838 20 + 17718866 --TAA-----TTCAAATT--GATTTTATT-
s caeRem4.Crem_Contig0   2042992 17 -  4500979 ----------TAAGTATT--CATagtttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7782460 17 - 33334924 ------------CGtatcaaaattgtttt-
i caeSp111.Scaffold629  I 2 I 23
s caeJap4.Scaffold18194   466242 28 -   823664 TATGAGACTTTTGATGTT--TACGATcatt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e cb4.chrX              10569505 39 + 21540570 I

a score=725.000000
s ce10.chrX              5238858 14 + 17718866 CTATATGTAAAATC
s caeRem4.Crem_Contig0   2043009 14 -  4500979 ttcctttcaaaatc
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold18194   466270 14 -   823664 atttatgaaaaata
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I

a score=91.000000
s ce10.chrX              5238872 1 + 17718866 T
s caeJap4.Scaffold18194   466284 1 -   823664 t
i caeJap4.Scaffold18194 C 0 I 105
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I
e caeRem4.Crem_Contig0   2043023 7 -  4500979 I

a score=0.000000
s ce10.chrX              5238873 72 + 17718866 TGACAGTAGATGTTTCCCAAAAGTTGTTCTCAATACATTCTCAATAACGGACTTTAAAACAAAACGTATATT
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e caeJap4.Scaffold18194   466285 105 -   823664 I
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I
e caeRem4.Crem_Contig0   2043023  7 -  4500979 I

a score=397.000000
s ce10.chrX              5238945 91 + 17718866 ATTTG-----GAAGCTTACAATCAGACTAGTCCTTATTAAAATT-CTATCGGTGCAACTCAACTTTAAAC-------ACCTGAAATTTCAATTTAAAAATGTTT
s caeJap4.Scaffold18194   466390 98 -   823664 ATTTGACACTGAAACT----ATTAGAACAATATTTATCTTGTTTGCTGGTGGTATA--TCAacatagaactgatacggcaAGATAGTTCAATTTCGAAGTAGTT
i caeJap4.Scaffold18194 I 105 I 59
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I
e caeRem4.Crem_Contig0   2043023  7 -  4500979 I

a score=0.000000
s ce10.chrX              5239036 71 + 17718866 TGCGGGTTGTCGAAGTCCCTCAAACATAGTTAGGAAAAGTTTCCTACTTTGGAAAAAAAATTTGAAAGTTG
e caePb3.Scfld02_0       3526355 22 +  4147112 I
e caeJap4.Scaffold18194   466488 59 -   823664 I
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I
e caeRem4.Crem_Contig0   2043023  7 -  4500979 I

a score=-600.000000
s ce10.chrX              5239107 130 + 17718866 TTTCGTTTTGGTGCAATTT-----TTCAGATCCTCAGAG-------TAGTGAACTAATGT----ACTTTCGTGGTGACCCAGACTGACGTTAAGCTTTCGAATGAAATAGGTCTCGGCAAACTTTAT----GGAGTACATCTATTACGAA
s caeJap4.Scaffold18194   466547 134 -   823664 TCTCGTATTGCGATAAtttatgtattgtgtttttcaAAGAATTTATCAGTGATTTATCATCAACACTCTTTTGATAAAACAG-----------GTTTTTTCCTAGAAAAATTATTCGCATTCGTTATACAAGGGGCA-----GTTTCAAG
i caeJap4.Scaffold18194 I 59 C 0
e caePb3.Scfld02_0       3526355  22 +  4147112 I
e cb4.chrX              10569505  39 + 21540570 I
e caeSp111.Scaffold629   7782477  23 - 33334924 I
e caeRem4.Crem_Contig0   2043023   7 -  4500979 I

a score=-988.000000
s ce10.chrX              5239237 14 + 17718866 ----AACTTCCACCCAAC-
s caePb3.Scfld02_0       3526377 13 +  4147112 ----AACTTCAATTTGA--
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold18194   466681 19 -   823664 AAATCACCTAAGTTTGTCG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I
e caeRem4.Crem_Contig0   2043023  7 -  4500979 I

a score=67.000000
s ce10.chrX              5239251 1 + 17718866 A
s caeRem4.Crem_Contig0   2043030 1 -  4500979 A
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0       3526390 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   466700 1 -   823664 G
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10569505 39 + 21540570 I
e caeSp111.Scaffold629   7782477 23 - 33334924 I

a score=437916.000000
s ce10.chrX              5239252 755 + 17718866  
s cb4.chrX              10569544 748 + 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2043031 748 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7782500 750 - 33334924  
i caeSp111.Scaffold629  I 23 C 0
s caePb3.Scfld02_0       3526391 749 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   466701 891 -   823664  
i caeJap4.Scaffold18194 C 0 I 555

a score=-3280.000000
s ce10.chrX              5240007 12 + 17718866 ATAAAT---AATT---TT
s cb4.chrX              10570292 14 + 21540570 GACCA----AAATTTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2043779 15 -  4500979 GAACATTTGAAAT---GA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3527140 11 +  4147112 AGACA----AAGC---GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   467592 555 -   823664 I
e caeSp111.Scaffold629   7783250  0 - 33334924 C

a score=797459.000000
s ce10.chrX              5240019 1080 + 17718866  
s cb4.chrX              10570306 1009 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2043794 1054 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7783250 1051 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3527151 1054 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   468147 1049 -   823664  
i caeJap4.Scaffold18194 I 555 C 0

a score=-3499.000000
s ce10.chrX              5241099 32 + 17718866 CCTGAAAAAATAAAGATGAGAAGCCAAAATTT--
s caeRem4.Crem_Contig0   2044848 13 -  4500979 CCTACAA-------------------AAGTAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7784301 18 - 33334924 CCTG-GAAGCAA-------------GAAGTAT--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3528205 19 +  4147112 CCTGCAAAAGAA-------------TAAGTTT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   469196 32 -   823664 cctgaaaaaaaaaatatatttag--cAACTATTt
i caeJap4.Scaffold18194 C 0 I 580
e cb4.chrX              10571315  0 + 21540570 C

a score=-34881.000000
s ce10.chrX              5241131 187 + 17718866 CTTTTG---------------------------------------------------------------------------------AGAAGAAATAAAGGTTTTTTGCTTCTAAACAGTAATATTTCTGCTGGTGAATTTTTCAATTAGATTTGGGCGCCTACTAGTTACCGAAAAGTTGAAAATGTTTCAATT-------------------------AATTTTTTTAAACATCGATCAATTGAAAACTCATTGTTTTGGGAGCATTTCTAGTGTAGATCCCTGTTCA-----------------------------------------CTA
s caeRem4.Crem_Contig0   2044861  34 -  4500979 CTTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGATAATG-------------------------TACTTTGTGAG--------------------------------------TCTA----------------------------------------------------------CTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7784319  30 - 33334924 CTTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCCACCA-------------------------AATCTTTCGCA----------------------------------------------------------------------------------------------------CTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3528224 302 +  4147112 TTTGTGGTTCAGTTCAGTCATGTTTTCAGATAGCTGTGTGAACTACAAAACCCACAAGATTCTGCTTCATTAAGATTCTATCTTTTGACAGGAAAAAGAGCATCGACGCTCCAAACC--TAGCAAAGTTGGCGGTTGGTCGCGTAGCTCAGCCGGTGGCACTATTTGTTATC-------------TGCCACACCAGCCTCGGGTTTAAACCCATCAGCAGAATTTCTTACagga-----------aatagtttttattttacacCCTTTTCTA------AATTCTGACCAATGTTAGAACCACTTAACGGAACCTAACACTTCTTCGATTTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   469228 580 -   823664 I
e cb4.chrX              10571315   0 + 21540570 C

a score=910.000000
s ce10.chrX              5241318 1 + 17718866 A
s caeRem4.Crem_Contig0   2044895 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7784349 1 - 33334924 A
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3528526 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   469808 1 -   823664 a
i caeJap4.Scaffold18194 I 580 C 0
e cb4.chrX              10571315 0 + 21540570 C

a score=560470.000000
s ce10.chrX              5241319 1021 + 17718866  
s cb4.chrX              10571315  874 + 21540570  
i cb4.chrX              C 0 I 113
s caeRem4.Crem_Contig0   2044896  879 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7784350  878 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3528527  883 +  4147112  
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold18194   469809 1185 -   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1268.000000
s ce10.chrX              5242340 11 + 17718866 TTAAATTTAGT--
s caeRem4.Crem_Contig0   2045775 11 -  4500979 CGCAAATTAAT--
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold629   7785228 11 - 33334924 CCCATTTTGTT--
i caeSp111.Scaffold629  C 0 C 0
s caeJap4.Scaffold18194   470994 11 -   823664 --aaaaatgtttt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3529410 25 +  4147112 I
e cb4.chrX              10572189 113 + 21540570 I

a score=273.000000
s ce10.chrX              5242351 1 + 17718866 T
s caeSp111.Scaffold629   7785239 1 - 33334924 T
i caeSp111.Scaffold629  C 0 I 24
s caeJap4.Scaffold18194   471005 1 -   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3529410 25 +  4147112 I
e cb4.chrX              10572189 113 + 21540570 I
e caeRem4.Crem_Contig0   2045786 29 -  4500979 I

a score=295.000000
s ce10.chrX              5242352 10 + 17718866 ATTACCTTTA
s caeJap4.Scaffold18194   471006 10 -   823664 ttgtcctTTA
i caeJap4.Scaffold18194 C 0 I 20
e caePb3.Scfld02_0       3529410 25 +  4147112 I
e cb4.chrX              10572189 113 + 21540570 I
e caeSp111.Scaffold629   7785240 24 - 33334924 I
e caeRem4.Crem_Contig0   2045786 29 -  4500979 I

a score=0.000000
s ce10.chrX              5242362 450 + 17718866 CGATGTATTAATTTATCTTTATATCATTTGTTTTACTTGAGTAAGTTGGTTGTATAAAAAATTACATAGCCAATAGGATTTTAATAAATAATTATTCAAAAACTGGTAACAGTAATGGCACACTATTTGGCTATTTAGTCAGCAACTGGAAGTAATCAACATCAAATGACAAAAAAATCATGTGTTTTGCAAATTTTGTTCATATCGGGATTTTGTAAAATAAAGAATCACCATTTTAAAAGAGCACGTTATTGCTTTGATGTGCTCGGTTCTCGTCACGATCTCAGTCTCAGATGTTTAGCAAAACTGAGAAATTTAACAGGCTTGTTTTTGATGTTTATGAAGTTACAGAATAGAAAATTAACAAAATCCTGGAGTTTCATAATTTGAAATTTCGTAAACTTTAATTGCTCACATACATTAAATCAGCAAATATGTGAAACCTGGCAC
e caePb3.Scfld02_0       3529410  25 +  4147112 I
e caeJap4.Scaffold18194   471016  20 -   823664 I
e cb4.chrX              10572189 113 + 21540570 I
e caeSp111.Scaffold629   7785240  24 - 33334924 I
e caeRem4.Crem_Contig0   2045786  29 -  4500979 I

a score=106.000000
s ce10.chrX              5242812 6 + 17718866 CTGAGA
s caePb3.Scfld02_0       3529435 6 +  4147112 CTACAA
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold18194   471016 20 -   823664 I
e cb4.chrX              10572189 113 + 21540570 I
e caeSp111.Scaffold629   7785240 24 - 33334924 I
e caeRem4.Crem_Contig0   2045786 29 -  4500979 I

a score=546.000000
s ce10.chrX              5242818 2 + 17718866 AA
s caePb3.Scfld02_0       3529441 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   471036 2 -   823664 AA
i caeJap4.Scaffold18194 I 20 C 0
e cb4.chrX              10572189 113 + 21540570 I
e caeSp111.Scaffold629   7785240 24 - 33334924 I
e caeRem4.Crem_Contig0   2045786 29 -  4500979 I

a score=91.000000
s ce10.chrX              5242820 1 + 17718866 A
s caeJap4.Scaffold18194   471038 1 -   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3529443 1 +  4147112 I
e cb4.chrX              10572189 113 + 21540570 I
e caeSp111.Scaffold629   7785240 24 - 33334924 I
e caeRem4.Crem_Contig0   2045786 29 -  4500979 I

a score=54.000000
s ce10.chrX              5242821 1 + 17718866 A
s caeRem4.Crem_Contig0   2045815 1 -  4500979 A
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold629   7785264 1 - 33334924 A
i caeSp111.Scaffold629  I 24 C 0
s caePb3.Scfld02_0       3529444 1 +  4147112 T
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   471039 1 -   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10572189 113 + 21540570 I

a score=162065.000000
s ce10.chrX              5242822 221 + 17718866 CTCACGGATAGTACGTAGGCAATTCTTCGTGTTCCCCTCTCCGTCGTCAAAATCTGATAAAAGAACTCGGAGGGAGATGATACCGACTGATTGTACCATCCACGAGGTCGTGCAAATTTTTTGATAGATGAAGTGGGAATATTGTCGGACGTGTGAGGTGATTGAACTTCATGGAGGACATCGGGTAGGGCATTTTCTGAAAAAAAATAACGTGTTTTTTT
s cb4.chrX              10572302 216 + 21540570 CTTACCGAAAGTACGTATGCGATTCTCCTCTCGCCTTTCTCCGTAGTGAGTATCTGATAGAAAAACTCTGGTGGAGACGCTTCTGATTGGTTGTACCATCCACGTGGCCGCACGAATTTTCTGATTGAAGACGTCGGGATGATGTCCGATGTGTGTGGTGATTGTACTTCGTGTAGAACATCGGGAAGggcgttttctgaaaataattc--gTGTTTC---
i cb4.chrX              I 113 I 3
s caeRem4.Crem_Contig0   2045816 213 -  4500979 CTCACCGACAGAACATATGCAATCCTCCTTGCACCTTTCTCTGTTGTCAgtatttgatagaaaaactcGGATGGGGACGTTTCTGACTGATTGTACCATCCACGAGGGCGAACGAACTTTTTGATGGAAGATGTCGGGATGGTATCCGATGTGTGTGGGGATTGTACTTCGTGTAGCACATCAGGAAGAGCGTTCTCTTAAAacgattt-----tctc---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7785265 206 - 33334924 CTCACCGATAAAATATACGCAATTTTTCTTGCACCCTTCTCCGTCGTTAGTAATTGGTAGAAGAACTCGGAAGAAGATGCCTCTGATTGATTATACCAGCCGCGAGGTCGCACAAATTTCTTGATTGAAGCTGTCGGGATGATATCCGATGTATGTGGTGATTGCACTTCATGTAAAACATCTGGCAACGCGTTTTCTGTAAAAGA---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3529445 206 +  4147112 CTCACCGATAGAATATATGCTATCCTTCTGGCACCTTTCTCTGTTGTCAATATTTGATAGAAGAACTCAGAAGAAGACGCTTCTGACTGATTGTACCATCCACGAGGACGtgcaaactttttgatggaaGATGTCGGGATGATATCCGATGTGTGTGGTGACTGTACTTCGTGCAGAACATCGGGAAGGgcgttttctgaaattga---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471040 207 -   823664 CTCACCGATAAAACGTAAGCTAAACGTCTTGCACCGGTATCCGTTGTCAAAATTTGGTAAAAGAACTCGGAAGCTGATGACTCTGACTGATTGTACCATCCTCTTGGCctcgcaaatttttttatcgaaGACGTCGGAATCGGGTCAGACGTGTGAGGAGACTgaatttcgtgaataacatCGGGGATTGCgttttctgaagaaaaa--------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-14013.000000
s ce10.chrX              5243043 83 + 17718866 GTTCCACATTTGCAAAGTACAATGTTTATATTTAAAGGCGACTAAAGATGATTTTTTCTTAAAACAATAATAATGAAAGTACT
s caeRem4.Crem_Contig0   2046029 24 -  4500979 --------------------------------------------------attttgttatA-------GTTACTGAC--TATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7785471 13 - 33334924 -------------------------------------------------AATTGTTCTTTG---------------------T
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3529651 13 +  4147112 -------------------------------------------------tacTTTTCTGTG---------------------A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471247 30 -   823664 ---------------------------------------------actCTATTGCTATATA--------ATCATAAAGCTAGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10572518  3 + 21540570 I

a score=-7142.000000
s ce10.chrX              5243126 62 + 17718866 ATTCAAGTTTTTAATTAATCCGCAGTTAAAACAGGTACAAATATAGTTAAAGTATCAAAGAA
s caeRem4.Crem_Contig0   2046053 26 -  4500979 ATTCAT--------TCAACTTCTACTTTCTActt----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7785484  6 - 33334924 ATTCAT--------------------------------------------------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3529664 28 +  4147112 CTGCAT------CATCAGCAAACAGTTCTAAATG----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471277  0 -   823664 C
e cb4.chrX              10572518  3 + 21540570 I

a score=-21779.000000
s ce10.chrX              5243188 85 + 17718866 CAACTGTTTTTATTCAGAAAA---------------TTTTATGTCTTGATAATAACTTCAGGAA--------GTCACAATTGTTTCATAACCAAATCAAACTGCACTA
s cb4.chrX              10572521 87 + 21540570 CAACCGTTTTTATCTAtcaaaccccccccccccgcttATTTGGTTCTGATAAC--TTTCC--------TGTGATTGACACCTTG--AT---------GCAACATAATA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2046079 19 -  4500979 --------------------------------------------------------ttc-------------attga--------------------gaaaaataaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7785490 31 - 33334924 --------------------------------------------------------TTCCGAGG-------GGTTGACACAATT--------------CATTCTAACA
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3529692 44 +  4147112 -------------------------------------------------------ACTCAGAAACCTATATGATtgacactgtttcaa---------actttatcGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471277  0 -   823664 C

a score=71133.000000
s ce10.chrX              5243273 493 + 17718866  
s cb4.chrX              10572608 566 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2046098 524 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7785521 540 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3529736 519 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471277 484 -   823664  
i caeJap4.Scaffold18194 C 0 I 32

a score=-4934.000000
s ce10.chrX              5243766 48 + 17718866 TCGCCAAATCTATTTAGCAATTTGGCATTTTGGCAAGAAAACGGACGA
s cb4.chrX              10573174 34 + 21540570 CGGTCA-GCAAATTG---GATTCGAT---------GGACGACGTCCG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2046622 31 -  4500979 CTGCCATACAAATCA---AATCTGA--------------GACAgccgg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786061 30 - 33334924 CTTGCatat-aattg---aatttga--------------gaTGTCCCG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530255 30 +  4147112 CTTccattcaaatca---aatttga--------------gaaacccc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471761 32 -   823664 I

a score=1887.000000
s ce10.chrX              5243814 107 + 17718866 CAAAACAAAAGAAATCAGAAAAAGAAAGAAAAAACATGAAACCTAGGA--TGAAACAATAAAAATAACAT---GAGAAAAACTAGTTTTGAGTAAC------------------TTCTCTCATTTCTTTC
s cb4.chrX              10573208  79 + 21540570 -----------------------AATGGAAGCGAAATGAAATCTGGGATGCGACAAGGCAAGAATAACAA---GAAAAGTACCAGTTTGAAGTTAC------------------TTCTCTTAC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2046653  94 -  4500979 aaaaaag---------------aaaagaaaaccaagAGAAATCTGGGA--CAGGAGGGAAAGAATAGCAT---aaagaaaactagttttcagtTACTC-----------GATAGTCTTGTTACCT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786091  99 - 33334924 AAGAAAGAATAACGAC-GATGCAAACGGAAACATAATGAAATCTGGGA--AGAAAAGACAGAAATAGtacacgaaaaaaaaccagtttctcacta-------------------ttttttt---------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530285  87 +  4147112 -aaaaagaaggaag--------aaaagaaaactctaTACTATCTAGGA--ttgaaagacaaaaataacAC---TAAAAGAACCAG-TTCTACCTC-------------------TTCTCTT---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471793 118 -   823664 taatttaaattaatttcgaacgaaaataaaataaaataaaatacaaag--tgaaacaaaaaaaaacagaggc-AGTGAAAACCAGTTTTCGGTTACTTCCTTCCTGTTGAATATTTCTTCC---------
i caeJap4.Scaffold18194 I 32 n 32

a score=-17333.000000
s ce10.chrX              5243921 332 + 17718866 AAACCA----TTATTCACTAGAAACTGCTGAAGAATGTG--GAAAACATTGGAAACACATA-ACAATTCAATTGTTTAGTA--ACAATATTTCGCA---------TCTCATCGT---TTTCATTT-------------------------------TATTGAGAAGCGAAAG--------TAAGAAGAGCAAACGTGGA----CAGAATGGTTTGGGTGAATAAAAACGGAAAACAAATACTCTACGTCACACT-GAACGTAACCACAAATCATCTTCACAGG---TTGG-----------GTG-GAGTAGGACACTCTTTGCGTCTCAGACGGGATGTGTCCTCCTCC---------TC--------CCTACCTCCCTCTTGCGCGCGCTGCGGGCTAACTCTAGT-GCTGACGCGTTTCTCGTGCACT-
s cb4.chrX              10573287 388 + 21540570 ---TCA----TTATTCCCT-GGAA---CAGAATGGTGTGGCAAAAACATGTGAAACGCATACAAAAACGAAGT-TCCCTCATGAAAATCGCTCACA--AACTGAATTTTCCCAAAGTTTTTAccttttctcacatttttctattcataAAGAAAGGAATATAAAAGTTTGGA--GCAGCTGAAGTTGAACCAAAGTGGg--gataaaa-------gaaaaaaaaaaaggaaaaataaatatggCGCGT--CACC-GAACACAACCGCAAATCATCACCACACTAGGTTGACCGATAAGTAGGAG-GGAGGAGGCAAAC-----------GGCGGAGGACGGGGACACTTGTCTTAGACGTTGATGAGTTTTGC--GCCTTCTGCGCGCATTTTGCGCCAACAAAAATCGTTGACGCATTTCTTCTTCGCA-
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig0   2046747 350 -  4500979 --GTCG----TTATTCACTAGGCA---GTAAAGAGTACGG-AAAAACATGTGAAAcgaata-aaaattgtatt-ttgtcca--aaaataactttta--aaataaGACGTTCCAA---TTTTactt-------------------------------aacaaaaaattatatt--gcACCTTAATAAGAGCCACAATTAGTTGAGAAAA-------GTAATGAATGAACGAAA---AAATATAATGCGG--CCTCGGAACACGACCGCAACATATTACTGCCGCAGGTTGG--GAAAAGGAGGAG-AGGGAAGACACCCTCT-ATTCTAAGATAAAGAGTGCGCATCCTC-------ACGC--ACGCGTTCTGC--GCCTTCAATTTGCGTTTTGCGTCAACCGACGG-GCTGGCGCATTTCTCGTGGGAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786190 302 - 33334924 ---ccgaaatttacTCATTAAAAG---GGCGAAAAGTCA--AAAACTAGAGGaa--ctaca-aaaat----------------agaagatctttaag-aaatggaatttctCGT---T------------------------------------------GATagatgaaag--gaaagtgagaagaagcatgaagatg----gaaaa-------ggtgagtaaaaaagaagaataaatagAGCGCGT--CATT-GAACAAAACCACAAATCATCTCCACGGCA--TTAA--GGTAAAGAGACG-GGAGGCGCACCTCTCT-TGTCTCAGATAGAGGACCTACCTCTCT---------GC------------------------ACGCGCTGCGGGTCAAGGAGTCC-ATTGACGCATATCTCGTGTCACT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530372 326 +  4147112 ---CCG------TTTCTTTCAACT---ACCTAGAACGCG--aaaaacatgtgaaacctata-aaaatccaact-tgaacaa--aaaagatatgcaaacaaataaaGTTTACTGC---TTTTCTCT------ACGTTCTC-----------------AACGAAAAGGTGAAAAGTGAAAGTTAGAGCAAACGAGGAATTG----GTAAA-------GCtatataaaaaaggaaaataaataGAGCGCGT--CATT-GAAGAAAACCACAAATCACCTCAGTAGC------A--GGTAAGGAGACATGAAGACGACACCCTCT-TGTCTCAG--CGGAGATGCGCCTCCTT---------GT-------------------------CGCGTTTTGCGTCAAGTGCGCC-CTTAGCGCGTTTCTCG-ATcact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471911  32 -   823664 I

a score=-4258.000000
s ce10.chrX              5244253 49 + 17718866 CTTATTTTCTATTAGTTATATTCATTCTTTTATATCGAGTAATTGATGT----------------------
s caeRem4.Crem_Contig0   2047097 63 -  4500979 -AACTTTTTTACT-TAACTTCTTCAGCTTTTCCAtagaa-aaagagtaaaataaagaagcaaaagt-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786492 58 - 33334924 -TATTTTTCTGCTGGGAAGTCCCTGTTTTTTCCACGAAG-AAACACTAG-----------AAAACTGTTTT
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530698 65 +  4147112 -cattttcctcttgggaAGTCGTGGATTTTTACCTTAAA-AAGTAATTA----AAGCAGCAAAATTGGATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471911 32 -   823664 I
e cb4.chrX              10573675 45 + 21540570 I

a score=30055.000000
s ce10.chrX              5244302 121 + 17718866 -----------AGTTTTTTTG---AATA-TTTCAAATTTTAGGT--ATATTATGTAAACGACAAAA---ACTCGATGCCACAAGGAATTCTTTACACACCAAATGAGATAGTTTTCAATTTAAAGTTAGTTTCTGAAGTGA
s cb4.chrX              10573720 118 + 21540570 aatttttctgcaatttc-------agaagaaacaaATATCACATGAGTAACATGTGAACACTGAGCAG-TTTCAATGCCGCAGGGAATTCTCCACACGCCAAATGAGACTGTTTTCCACTTGAAGC---------------
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0   2047160 108 -  4500979 --------tg-agtttc-------agaa-agagaaataGTTAATCAGTAATATGTAAACTGGAAAATA-ACTCAATGCCACAAGGAATCCTTCACACGCCAAATGAAACGGTATTTAATTTGAAGT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786550 114 - 33334924 -----------AGTTTATTTacagagaa-taaaaaagtaaatattAATATTATGTGAACTATAAAAGACACCAAATGCCGCAAGGAATTCTTCATACCCCAAATGAAACGGTGTTTCATTTGAAGT---------------
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530763 106 +  4147112 -----------GATTTC-------agga-ggaaaaagtgaaaattgatgttatGTAAACATTCAGACA-GCTAAATGCCGCAAGGAATGCTACACACCCAAAGTGAGacagttttcaatttaaaGT---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471911  32 -   823664 I

a score=36456.000000
s ce10.chrX              5244423 148 + 17718866 AAAAATATTTAAA---------TTTCGAAA--------------TTATT-TTTCAGAAAGCCACCGCGCACAA---TGTCGCTTACAACAAAGAGGTATTTTGCATTCATATTCTCATTTTGCATCTTCATGTACCTAGTTTTGGTATGTAGTTTT----TTTT-----TCTGGAACCTTGAGA
s cb4.chrX              10573838 163 + 21540570 AAGTCTttggaac---------tttaaaaa-atcattacTAACTTAGTTATTTCAGGAAACCTCCGCGAACGG---TGTCAATGAAAACAAAGCAATACTTTgcaatcattttttcattttgcataTTAGTTTATCTTCTCTTGGTTAGTTACACAACGGATAT-----CTTtgtt---aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2047268 171 -  4500979 AAGACTATTGACG---------TTTAAAAATATCATAGATTATCTATTT-TTACAGAAGACCTCCCAGAACGA---TGTCAATCAAGACAAAGCAGTACTTTGCATGCATATTTTCTTTCTGCATTCTCATCTACCTTGTTCTAGTGAGtttttttACGTTTATGTTGAGTTTgttcacaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786664 155 - 33334924 AAGAAAATCGgtgaatgaaatcatttaaaa-atgat--------taatt-TTACAGAAAACATCCTCGAACCA---TGTCTCTGAGAGCGAAACAATACTTCGTATGCATTTTCTCATTATGCATACTTATGTACTTAGTCctagtgag-----------tttt-----ttgtgcTGATTAACG
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3530869 163 +  4147112 GAGAAAATcgtta---------ttttaaaa-aatatatcgT-CGTTATT-TGACAGAAGACCTCCTAGAAAAA---TGTCTCCGAAGCTGAAGCAGTAttttgcgtgcatattttcattttgtatatttatgtatttagtattggtgggtagtttt-tgttttc-----ttttgttgactgagg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   378433 152 +   823664 AAAAAT----------------GTCTAATA-ATTATTCAA----TATCT-ACTCAGAAGAACGCCTCGAAATAGATTGTCAATGAAAACAAAGCAATATTTTGCCTTCATCTTCCTGCTTTGCATATCAGTTTACTTATTACTGGTAAG-AGTTTT----GATT-----TTTAGAACTCGGGGA
i caeJap4.Scaffold18194 I 34586 I 163

a score=-2904.000000
s ce10.chrX              5244571  8 + 17718866 TG--GATTTC
s cb4.chrX              10574001  2 + 21540570 tc--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2047439  2 -  4500979 tt--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786819  8 - 33334924 tt--attttc
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3531032 10 +  4147112 tttgattttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   378585 163 +   823664 I

a score=144970.000000
s ce10.chrX              5244579 412 + 17718866  
s cb4.chrX              10574003 509 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2047441 388 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7786827 414 - 33334924  
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3531042 405 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   378748 480 +   823664  
i caeJap4.Scaffold18194 I 163 I 185

a score=-69961.000000
s ce10.chrX              5244991 132 + 17718866 --aaaaattG-------CTGATACTTGCCA--------------TATG---CATA--------------TTTGAAAAAATTTGA-----------------------CGCTGCTCCGCCCTTGATGC---------------------------TGCATT--------TACTTTTTGA--TCAG------GAAAGTAGTAACTTTTTAGA-------------------------------------------------------------------------------------------------------------------GGTATAAATATAC----------AAGGACAGT-AACCTA
s cb4.chrX              10574512 227 + 21540570 TCAGGAATTGACGGGATCGGATTTCAAACA---------------------AATATTGGTCAGGTTTTTGTcgaaacatttccaaaaacgTCTGCCTAGTGgccatggtcagattttggtcggATGT---------------------------TGGAA---------TGCTACTAGA--TCGGAACCTTGT---CACTGGCTTGTCGGA-----GTCTGGTAGGTT-TCAGTAGC--------------------------------------------------------------------GACCGTATCCGGAATCTACCTCCGTCCAGAAGTTGCCGTCTAACCTCGAGTAT-ATCata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2047829 142 -  4500979 TTAAAAATCGA------TGGACATCGAATG---------------------AATA--------------GAAGATAGAGCGCCGGAAGTGTGAATCACAAAGCAA--ATCAAATTTGTTCTTGATGT-------------------------------------------------GA--tcgattttttaa---tataaactTGGTTGA-------------------------------------------------------------------------------------------------------------------CTAAccaaaagtt----------ctcaaaaatcatttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7787241 178 - 33334924 TGATAGTTTG----TTCTCGACTTTGAACAGTTTGATTTGCAGTCATCTGACATA--------------CgagaataaattttgaagttgaaaCTCGg--------------------------------------------------------tgaaatataaaatttatgACTCAA--CCAAATAACAAAAGGTTTCAGTTGGAATTGCTAAAATTTTGCATTTCATTCATagc---------------------------------------------------------------------------------------------------ttt----------ttctaaaaa-gttaca
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3531447 298 +  4147112 t-------------ttttcaaaactgtcca--------------TATTTGACACA--------------AAAGGATCAATGCGAAAGTCGGAAATCGGAAAGTTTTGTTTATATCTCTGCAAAATAGTTTTGCCACTAGTACGAATTTGACGTTTGCAGCAAAAAGTACGTAATCCGAGTTCGAATTTTGGAGAGAACCCGTTTGTTTGAACAATATTAGTTAAATTATTTGTAACGTATATGCACAAAAAACACATAGAACTCAGTTCGAAAAACGAACCAAATAATAGGATAACGTCCGTAATCCAGTA--------------GAAATCGAAgctt----------tgggaaaaa-aagaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   379228 185 +   823664 I

a score=143247.000000
s ce10.chrX              5245123 846 + 17718866  
s cb4.chrX              10574739 715 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2047971 641 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7787419 626 - 33334924  
i caeSp111.Scaffold629  C 0 I 14
s caePb3.Scfld02_0       3531745 757 +  4147112  
i caePb3.Scfld02_0      C 0 I 119
s caeJap4.Scaffold18194   379413 622 +   823664  
i caeJap4.Scaffold18194 I 185 C 0

a score=-797.000000
s ce10.chrX              5245969 12 + 17718866 CTCATAAAAACA
s cb4.chrX              10575454  9 + 21540570 ---CTTGCaacg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2048612  9 -  4500979 ---ccaaaacca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7788059  7 - 33334924 ---CAAGTA--A
i caeSp111.Scaffold629  I 14 C 0
s caePb3.Scfld02_0       3532621 12 +  4147112 CTCCGAGAAACA
i caePb3.Scfld02_0      I 119 C 0
s caeJap4.Scaffold18194   380035 12 +   823664 tttgaaaaaaca
i caeJap4.Scaffold18194 C 0 I 578

a score=-9311.000000
s ce10.chrX              5245981 5 + 17718866 ----AA-----CTA
s cb4.chrX              10575463 3 + 21540570 ----tt-----t--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2048621 8 -  4500979 ----attatact--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7788066 5 - 33334924 ----AA-----TGA
i caeSp111.Scaffold629  C 0 I 5
s caePb3.Scfld02_0       3532633 5 +  4147112 ----AA-----TTA
i caePb3.Scfld02_0      C 0 I 155
s caeJap4.Scaffold18194   380625 5 +   823664 AAATA---------
i caeJap4.Scaffold18194 I 578 C 0

a score=240196.000000
s ce10.chrX              5245986 708 + 17718866  
s cb4.chrX              10575466 640 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2048629 691 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7788076 670 - 33334924  
i caeSp111.Scaffold629  I 5 C 0
s caePb3.Scfld02_0       3532793 705 +  4147112  
i caePb3.Scfld02_0      I 155 C 0
s caeJap4.Scaffold18194   380630 902 +   823664  
i caeJap4.Scaffold18194 C 0 I 4744

a score=4150.000000
s ce10.chrX              5246694 179 + 17718866 TTGGTTCATTTTTCTTTCATTTTTCTA---GCTGTT---CAGTTT-------GTATACAT---ACGTAGGAAAAACAAACGGATA--TAATTGAATTTTCACGGTCGATAGCTTTAGTT-TTTGTTGATTTGCTC--AAAACAGTCGGCTTTCCAGAAAATTTTTTACAGCTTGCCAG-----TGTTCATTGTGTTT--TAAATAAA
s cb4.chrX              10576106 152 + 21540570 CCTTTT------TTGTATA-----------GCGGTT---TGTATT-------GTGTACAT---ACTTAGA------AAACGGATACTTAATTGAATTGATATGGTCAATTGCTTTAGT--TTTGTCGATTTGCTCAAAAAACCTTC--CGATCCTTTGTCTTTGTTGCAGcttgcctt---ttttttc------------gaataaa
i cb4.chrX              C 0 I 1613
s caeRem4.Crem_Contig0   2049320 179 -  4500979 TTATTTCGACACTTGTATCCTAATTAGCGTGTGGTTCAGTTTTTT-------GTGTACAT---AAGTAGAA--TCCAAACGGata--taattgaattttcatgGTCAATTGCTTTAGT--CCTTACAATTTGCTC--AAAACAATC--CGATCCCTT---TTCGGTCCAGCttgccat---ttttttcattgtgtta--taactgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7788746 161 - 33334924 atTGTTGAGTTGCCTTGTACCTAT------ACATTT--ATTGTTTAGTTTAAGTGTATAT---ATGTAGAA-TTTCGAACG------------------GATGGTCATTTGCTTTAGT--TTTCATGATTTGCTC--AAA--------CAACTA--TTACTTTGTTAAAGCTtgccatttctcttttttctttgttctttcaatg--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3533498 174 +  4147112 ATTATT---CTCCCGAGTA-----------GCATTC--ATTGTTC-------GTGTATATAAAACTAGGAA-AATCAACCGAAAT--TAGCTGTACTTTGACGGTAAAATGCTTTAGTTGTGTTCTGATTTACTC--AAAACAACC--CAACCCATCTTCGTTTTCGAAACTTGCCAT---TCATGCTAGTCTGCTTCTTGAAtata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I

a score=-4540.000000
s ce10.chrX              5246873 34 + 17718866 GTTATTTCAGGA-----ACAAAAATGTAGTGAATGTTTT--
s caeRem4.Crem_Contig0   2049499 24 -  4500979 -----------------ataaaaaacttgtatgtatctttt
i caeRem4.Crem_Contig0  C 0 I 144
s caeSp111.Scaffold629   7788907 35 - 33334924 ----attttcaatgaatataACTGgtctttgaatatttt--
i caeSp111.Scaffold629  C 0 C 0
s caePb3.Scfld02_0       3533672 28 +  4147112 ctattttttcaa-----ataaatgcTCC-----GATTT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I

a score=100.000000
s ce10.chrX              5246907 1 + 17718866 C
s caeSp111.Scaffold629   7788942 1 - 33334924 c
i caeSp111.Scaffold629  C 0 I 3313
e caePb3.Scfld02_0       3533700 0 +  4147112 C
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeRem4.Crem_Contig0   2049523 144 -  4500979 I

a score=-276.000000
s ce10.chrX              5246908 181 + 17718866 AAAAAACATTTAAAATTTTATTAGCAGGCAAAAAATGATAAAAATTTAATTTTGTCTATCCTTTTCTGGAGGTCGATATGAAAGTGTTCTAGTAGTTTCAAATTTTAATTGCGCTTCAATTGTTTGTAGTTGAATGTTAAAAACTTAAAATTGTATTAACTTGAATTGGTTGGGCCACTAG
s caePb3.Scfld02_0       3533700  96 +  4147112 AATAAACAATTTCgcttttttta----------------aaagatctcatttt-----------------------cacaaagatgttctg--aaattcaaatttca-------------------------------------ttaaaattccACTTATTCACATTGAT-------CTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2049523 144 -  4500979 I

a score=-3553.000000
s ce10.chrX              5247089 86 + 17718866 TATCCGTACTTCTAGGCCAGTCCCTGATGTGTTATTGAC-AAACAAACCAGTAAACAAAT-----TTTGAGCGTGTTCTCTATATTTGATCA---
s caeRem4.Crem_Contig0   2049667 90 -  4500979 ttttcattctcatcgTCTAGTCAAAAATGCAGATTTATC-AAACAAAAATCTATATAAAACACAATT----CGCATATGCTGTTTTAGTTCATCA
i caeRem4.Crem_Contig0  I 144 I 31
s caePb3.Scfld02_0       3533796 66 +  4147112 CTTCCTTTCTGCCC-------CAaagcttcattttcagctcagCAAACTCCTAGACAATG--------------ATAACCTATATTc--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=-96.000000
s ce10.chrX              5247175 29 + 17718866 GACAAACGCGATTCATGACTCCAAATTGT
s caePb3.Scfld02_0       3533862 20 +  4147112 -----ctatgattt----ttcaaaatcat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2049757 31 -  4500979 I

a score=-5989.000000
s ce10.chrX              5247204 129 + 17718866 GAATTGACCGTTTTGAGTAA----------CTTCTAAGTGACTAAGTTTTACATTTTAGTTCTAGTTTTGATT--------TTTTTCCAGTAACTTTTTTATTATTCCATT---------TTGTCATTCGATCTATTTTCCATTTTGTTTCTGACT
s caeRem4.Crem_Contig0   2049788 154 -  4500979 TAAATAACCA-TTCTGGTCAGAATAACCTCCGACCAGGAACTCCAGTATTCTAGTTGACTCACAGACTCGATTTCATTAAATCTGTAAATTGACATGTTCTTTG-CCCATTGTCTAAAAAATGTGGTTAAAATCCTTTTCAGTTCTGATTCCAACT
i caeRem4.Crem_Contig0  I 31 I 44
s caePb3.Scfld02_0       3533882  89 +  4147112 ------actATTTCAAGTCA-----------------------CTGTCTCCCATTTG---------CTCAAGACGACGATATTCGT--ATAGACAATCACATGA-GCCATT-------------------AATCTTGTTAATTTCTGAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=-305.000000
s ce10.chrX              5247333 42 + 17718866 TATT--TTTTTCAGCCAGTAATTAATGTAGTCAAAATACACTGA
s caePb3.Scfld02_0       3533971 39 +  4147112 CATTCATTTTCCTGTCTAGAATACATTTGGTT----TGCTCTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2049942 44 -  4500979 I

a score=13418.000000
s ce10.chrX              5247375 493 + 17718866  
s caeRem4.Crem_Contig0   2049986 552 -  4500979  
i caeRem4.Crem_Contig0  I 44 C 0
s caePb3.Scfld02_0       3534010 504 +  4147112  
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=-600.000000
s ce10.chrX              5247868 10 + 17718866 AAAAAACTAA
s caeRem4.Crem_Contig0   2050538 10 -  4500979 acgttttttc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3534514 13 +  4147112 I
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=9458.000000
s ce10.chrX              5247878 140 + 17718866 -TTTGCTTTTT------------CAGTTTGCTAGTTTGAAATGAGGTCTGCTCTAGGTGTCACTAGTAAAACTTTTAAGTTGATTTGATTACC-CTCCTAGCTAGTGACAGTAGAACAAAAAAACCAATCAGGAAGAATGAACGCTTTATTCTC-
s caeRem4.Crem_Contig0   2050548 145 -  4500979 ttctctttttttctcatttttcacattcaaCTAGTACGAAAAAGGTTTTGTAGAAAGCTTCTATAgcaaaa---taaaattgatttgattATA-CGCTTTGTT----GAAAAGGGAGAAGAAAACCAATCTGAACGAATGAACGTTTT-TTCTG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3534527 139 +  4147112 -tttcctttttttttgcttc---cagTTGACTAGTACGACTGAGGTTTGTTGAAAAGCGTCGATAG-----------AGTTGATTTGATTATACCGCTTTGttgggagaaaagagagaacaaAACCAATCACAGAGAATGAACGCTTT-TTCTTC
i caePb3.Scfld02_0      I 13 I 195
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=660.000000
s ce10.chrX              5248018 52 + 17718866 GTTTTACGAAGCCGCAGGGCGTGGGCTCAAAAGATTTAGA-TTACTTTTGTTT
s caeRem4.Crem_Contig0   2050693 45 -  4500979 GGGTTAGA-----GCAGGAC---GACTCACAAAATTTCGACTCAATTTTGCTT
i caeRem4.Crem_Contig0  C 0 I 226
e caePb3.Scfld02_0       3534666 195 +  4147112 I
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I

a score=0.000000
s ce10.chrX              5248070 696 + 17718866  
e caePb3.Scfld02_0       3534666 195 +  4147112 I
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e cb4.chrX              10576258 1613 + 21540570 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2050738 226 -  4500979 I

a score=442.000000
s ce10.chrX              5248766 86 + 17718866 TTTTATT--TGTATTCCTTCTTCTCCTTCTACCAAGTTTTACCCTAAAAATTCAATAATTTTGGCAGTAGTATAGGTTTTCAAAAAGG
s cb4.chrX              10577871 67 + 21540570 ttttattcttgcatttcttcttcttttttttctcttgtctcactaaaaaattctg-aattctcacACT--------------------
i cb4.chrX              I 1613 C 0
e caePb3.Scfld02_0       3534666 195 +  4147112 I
e caeJap4.Scaffold18194   381532 4744 +   823664 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2050738 226 -  4500979 I

a score=1239.000000
s ce10.chrX              5248852 15 + 17718866 AAAGTGTGTTATTGT
s cb4.chrX              10577938  9 + 21540570 ------Tcttatctt
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   386276 15 +   823664 AATATGTGTTATTTT
i caeJap4.Scaffold18194 I 4744 C 0
e caePb3.Scfld02_0       3534666 195 +  4147112 I
e caeSp111.Scaffold629   7788943 3313 - 33334924 I
e caeRem4.Crem_Contig0   2050738 226 -  4500979 I

a score=-1313.000000
s ce10.chrX              5248867 19 + 17718866 CTTCTTTTTCTGGATTCCA
s cb4.chrX              10577947 10 + 21540570 attttttttc---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold629   7792256 16 - 33334924 CTTATCTTTCTAAATA---
i caeSp111.Scaffold629  I 3313 C 0
s caeJap4.Scaffold18194   386291 15 +   823664 GTTGCCCTTCAGAGA----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3534666 195 +  4147112 I
e caeRem4.Crem_Contig0   2050738 226 -  4500979 I

a score=500998.000000
s ce10.chrX              5248886 1164 + 17718866  
s cb4.chrX              10577957 1246 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2050964 1218 -  4500979  
i caeRem4.Crem_Contig0  I 226 C 0
s caeSp111.Scaffold629   7792272 1216 - 33334924  
i caeSp111.Scaffold629  C 0 N 0
s caePb3.Scfld02_0       3534861 1204 +  4147112  
i caePb3.Scfld02_0      I 195 C 0
s caeJap4.Scaffold18194   386306 1145 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=49455.000000
s ce10.chrX              5250050 103 + 17718866 ATTTTTGAACTTTTTAGGCAGTTGCGACATTCCAAAGACTTCAACCTACAAACGACATTTCAACAAGATATCGGTCTGCAAGATTTGAACGCTTGAGAGGTAA
s cb4.chrX              10579203 103 + 21540570 atttttgaactgtttAGGAAGTTGCAACATTCCATCGGCTTCAAACCAAGGATAGCCTTCCGCCGAGATTCCGATCGGCAAGATTTGAACGGTTGAGGGGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052182 103 -  4500979 atttttgaactgtttaGGAAGTTGCGACATTTCACAGGCTTCAACCTAAAGATGGCATCTCTCCCAGATTTCGGTCGGCAAGATTCGAGCGTTTGAGGGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3536065 103 +  4147112 atttttgaactgtttagGGTGCTGCAACATTCCATCGGCTTCAACCTAAAGATGGGATTTCACCGAGGTTCCGATCGGCCCGTTTTGAGCGTTTGAGAGGTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   387451 102 +   823664 ATTTAT-AATATTTTAGAACACGGCCACCTTCCGGAGACTTCAACCCAAAGAGAATCTTCCAGCCAGATACAGGTCTTCTAGATTCGAACGTCTCAGAGGTGA
i caeJap4.Scaffold18194 C 0 I 25

a score=-4062.000000
s ce10.chrX              5250153 26 + 17718866 CGATCAAAAATGTTTCTAAATACCAA--
s cb4.chrX              10579306 14 + 21540570 -----------GTCTATA-AAACTAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052285  2 -  4500979 -----------GT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3536168 17 +  4147112 -----------GTATAtatgaactctga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   387553 25 +   823664 I

a score=-1771.000000
s ce10.chrX              5250179 41 + 17718866 AAAGTTAAAAAATTAACAAATTGCATTTTAATTTAGACATT
s cb4.chrX              10579320 27 + 21540570 TA---TAAAAAGTTA-----------TTCGGTCTAGACATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052287  8 -  4500979 -----TGAACAAT----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3536185  0 +  4147112 C
e caeJap4.Scaffold18194   387553 25 +   823664 I

a score=-719.000000
s ce10.chrX              5250220 102 + 17718866 CGAACAAAAAGGAAAcagtgagggaattgtttaaaacaactccaatattgccaaaatgatcaaataccacagtaaacttttcaa------aaaacatcgaaatttttt
s caeRem4.Crem_Contig0   2052295  53 -  4500979 ---------------------GAGACTTGACGAAACCAA----------------------------------AAACTTCTTCACACGATAAGACActtgaagttttt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3536185   0 +  4147112 C
e caeJap4.Scaffold18194   387553  25 +   823664 I
e cb4.chrX              10579347   0 + 21540570 C

a score=-10993.000000
s ce10.chrX              5250322 238 + 17718866 attgacagtcaaaaagttgcagtctctgagtttttgctacttttggacgtcgttgatcaaaaaTAACTTTCTTTAAAATTTTATGGTCCACTTATATTAATAGCCAAACATTATGAAAATTCAAACATACAACAGTGCTATAGTATTATCAAAAAAAGTGGGAAAAACCTAGTAAATACCACTTTTTGAAAGTAAAAAAAATTGTCAAAACGTTTTTAAAATAGCAACAAGTTAGAAA
s cb4.chrX              10579347 126 + 21540570 ATCAGCGGTCTGCAATTTACCG-------------GTTATCTATG-----------CCAGGATT--TTTTCTTGAGGAATTC---------------------TCAATTATTATGGAAACTCA--------------------------------------------------------TCCTTTTCGCagctgagaaaaattg----aaca-----aaaataacTGTTTCCCAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052348  76 -  4500979 ------attttgaaa---------------------------------------------aact--cttctTTCAGGGGCTC---------------------CCGATAACATC--AAACCAA-----------------------------------------------------------TTTTCGTAG---------------------------AACCAGCTgttcttgaaaca
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3536185   0 +  4147112 C
e caeJap4.Scaffold18194   387553  25 +   823664 I

a score=207.000000
s ce10.chrX              5250560 1 + 17718866 G
s cb4.chrX              10579473 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052424 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   387578 1 +   823664 g
i caeJap4.Scaffold18194 I 25 C 0
e caePb3.Scfld02_0       3536185 0 +  4147112 C

a score=21643.000000
s ce10.chrX              5250561 270 + 17718866 AAAAAAAACCTTGCACAAAAAATAATTTATACGTCCCAC---------ATTTCAGGGGTTCCTGACACCATTCAACCAATATTCGTGAAACCCGCTGAAATTGAATCAGAGGAGTCACTTATACCAACTACTCCAGCTGCACCAATACAAGTTGTTCCATCTTCTGAAACGGTGTCTGAAATTTCATCAGAGTTTGCTCCAGCTTCAAAT------GAGTCCCCATCAGCGCTCTCGTTCACAGAGTTCAATATTGAA-----TCTATGCCAA------------------TAATCAAGGAGACTGAT-----
s cb4.chrX              10579474 254 + 21540570 -----ATGCCTCGTACAGTCACCAA----ACAATTTGAC----------TTCCAGGTGCTCCGGATCCGATCAAACCAGTTTTCGTCAACCCAGCATCGCTTGAGTCCGAAGAGCCATTGAACCCA---ACTCCACCGGCTCCAATCGAAGTGGTCCCATCGTCAGAATCATTTACCGAAATTCCATCAGACTTTGTTCAGACATC---T------GAGACTCCATCGCCACTCAGTTTCACAGAATTCAATATCGAG-----Tcacttccga------------------tttttaaagataCTGAT-----
i cb4.chrX              C 0 I 103
s caeRem4.Crem_Contig0   2052425 167 -  4500979 -----aag--------agtCTCT-------CAACCCCAC-----------TCCAGTTGCTCCAATTCAAGTTGTCCCATCTTCTG-----------------------AAACTGTCACTGA----------------GATTCCATTGGACTTCGTCCCAACCTCCAA------------------------------------------T------GAGACTCCAACACCTCTCAGCTTCACGGAGTTCAACATTGAA-----TCAATGCCAA------------------TCATCAAAGATTCTGAT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3536185 253 +  4147112 -----------------------aaaaagaaaattcaactATAAATGTCTTATAGGCTCTCCTGACAATATCAAACCGATTTTTGTGAAGCCAGCAGTTCTTGAAACCGAGGAACCACATAATCCA---ACTCCAATCGCTCCAATTGAAGTTGTTCCATCCTCCGAAACTGTGACTGAAACTCCAATTGATTTTGTTCCAACTTCAGAT------GAAACTCCAGCTCCTCTCAGTTTCACTGAATTCAATATTGAG-----TCAatgccaa------------------ttttcaaagagaCTGAT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   387579 307 +   823664 gaaaaaaactgtgaaaagAGAGTGATCTGACAATAAAAC------ACGTCTTTAGTCCGACCGGAAGACATCAAACCAGTTTCTGTGAAGTCTGCAATCATTGAGACGGAAGATTCATTGTTAGCCAGCTCTCGTCCAGCACCGATTCAAGTTATCCCGTCATCCGAAACTGTCACCGAAATGCCGATGGATTTATCCTCACCTTCTCATTCTCAGAAAACACCGGCACCATTTGATTTTAGTGATTTTAATATGGATGGTCCTCAATTCAAAGACATTTCCGCTGAGCCCTTCCCTAAAATGATAACAGAAT
i caeJap4.Scaffold18194 C 0 C 0

a score=-3219.000000
s ce10.chrX              5250831 49 + 17718866 TCTCCATCAT-CTTTCGACG-------AAAAATCGAACATCGGACTAACTTCGTCAT
s caeRem4.Crem_Contig0   2052592 52 -  4500979 GAGCCGTCTA-CTCATAAATTCCACACAACACCAGAGCA----ACCAACCACTTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3536438 49 +  4147112 GAGCCATCCA-CTTCCAAAGTGCTAACTACTCCTGAACA----ACCAACAACTT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   387886 43 +   823664 CATCCATCCAGCATTCAACGG------AAAAATTTACCA----CCCAA--ACTTC--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10579728 103 + 21540570 I

a score=-1050.000000
s ce10.chrX              5250880 78 + 17718866 CTGTAGCTCCGACTTCGCCAG------AAGTGCCTGTGACAACATCCGAATCGACT---ACTCCCGAACAT---GCAATCACTT-----CCGAAG
s cb4.chrX              10579831 84 + 21540570 CTGAGGCTTCAACTGAGCCAGAAACTCCAGAACCTT---CCACTTTTGAACCAATTCCAACT---GAACTAGTCGTGACCCCAT-----CTGAAA
i cb4.chrX              I 103 I 21
s caeRem4.Crem_Contig0   2052644 72 -  4500979 AGGAGCCCTCAACTG------------CTGAACCTT---CCACGTTCGAACCAATTCCCACTACCGAACAA---GTGTCTCCAT-----CTGAAA
i caeRem4.Crem_Contig0  C 0 I 21
s caePb3.Scfld02_0       3536487 60 +  4147112 ------------CTG------------AAGAGCCTT---CAACTTTCGAACCAATTCCAACCACCGAACAA---GTTGCACCAT-----CTGAAC
i caePb3.Scfld02_0      C 0 I 183
s caeJap4.Scaffold18194   387929 62 +   823664 ----------------------TACAACACAACCAA---AAACAACTAGACCAGCA-----TACAGAAGAC---ACTTTCCAATTATTGTTGAAA
i caeJap4.Scaffold18194 C 0 C 0

a score=71811.000000
s ce10.chrX              5250958 217 + 17718866 CCCCTGAGCCAATTTCTGAAGTGTCAAAAGCAACTCCCCTAGAGCATCACTACGCAGAAGAGCGTGTCTATCCAACAATGGGCTCTGTTCAAGCTCCTATTGAATTTGTTGAAGTTTTGCCAAGCCAACAGACTGAAGTGGCATCTACCAGTATTGCCGAAACAGAAGA----ACCAACAACTACAGCT---AAAACGCCCAAGAAA---CGCCGTCATAGAGTAGG
s cb4.chrX              10579936 217 + 21540570 CTACTGAGCAAACATCTGATGTTTCTCGAGGAACACCTGCCGTTCACGAGTACGCACAGGAGAGAGTCTTCCCAACAATGGTTTCAGTCAAACCGTCGATTGCTTCTATTGAAGTGTTTCCAAGTCACCAAATCGAAGTAGCATCCACCAATGCAGTGGAA----GAGACTCTCCCAACCACCTCTACC---AAGGCACCAAGAAAG---CGTCGTCATAGAGTAAG
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   2052737 220 -  4500979 CAACCGAACAAACTTCTGAAGTGTCTCGTGCCACTCCTGTAATTCATGAGTATGCTCAAGAACGAATCTACCCAACGATGGAGTTAGTGCAACCAACAACTGAGTTTGTTGAAGTTCTTCCAAGTCAACAAATTGAAGTAGCTTCCACCAACGTCGTCGAAATAGAAGAGCCTACC-ACCACTTCTACT---AAGGCACCCAGAAAA---CGTCGTCATAGAGtaag
i caeRem4.Crem_Contig0  I 21 C 0
s caePb3.Scfld02_0       3536730 220 +  4147112 CTACTGAACAAACTTCTCAAGTGTCTCGAGCAACTCCTGCAGTTCACCAATACGCTCAAGAACGAGTCTTTCCAACTGCTTTTTCAGTGCAACCACcaattgaatttattgaagTTCAGCCAA---AACAAATTGAAGTGGCTTCAACCAACGCAGTGGAAGTTGAA----CTACCGGCTACTTCTACTGTGAAAGCTTTCAGAAAGAGAAGGCGTCATAGGGTGAG
i caePb3.Scfld02_0      I 183 I 1
s caeJap4.Scaffold18194   387991 202 +   823664 ------------CTTCTCAAGAGCC------AGCTCACATTGTTCAAGAGTATGCACAAGAGCGTGTGTATCCCACCGCTGTTTCTGTGAAACCCGACATTGAATTTGTACAAGTAGTCCCAAGCTCCCAAATTGAAGTAGTTTCAACTAATGTGGCTGAAGTGGAAGAAACTATT-GTAACAACTACT---AAAGCTCCAAAGAGA---CGGCGCCACAGGGtaag
i caeJap4.Scaffold18194 C 0 C 0

a score=-782.000000
s ce10.chrX              5251175 4 + 17718866 GTTG
s caePb3.Scfld02_0       3536951 4 +  4147112 GTCA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   388193 1 +   823664 --c-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10580153 0 + 21540570 C
e caeRem4.Crem_Contig0   2052957 0 -  4500979 C

a score=662.000000
s ce10.chrX              5251179 16 + 17718866 ATTTTTTTAATTTCAA
s caeJap4.Scaffold18194   388194 16 +   823664 aatttttaaactttga
i caeJap4.Scaffold18194 C 0 I 13
e caePb3.Scfld02_0       3536955  0 +  4147112 C
e cb4.chrX              10580153  0 + 21540570 C
e caeRem4.Crem_Contig0   2052957  0 -  4500979 C

a score=0.000000
s ce10.chrX              5251195 362 + 17718866 ATTGATAATTCCTGTTAAAAGGGCGGATGAGACCAACCTAGTGGGCTCGACGGCTTCGAACCTGATATTTTGATCATACAAAAGTGGGCGTTTTTATTTCAAAAAAGTTCAAGAAATTCTTCAATTTTCCAATTATTCCAATTATACTAATTTTAACTTCTTATAATTTCTTGAAAATTGGCCTACAAAAGTAGACTAAATTGAAGTTAAAGCTTGCCGACAAGGTATACTACTACATAGTCGCATGAAAATTATTTTTGATGATTTATTTCCAAGCATTGCAAATTGGTATTGTAGATCCCCTCGACCTTTCTTGAAGGTCTAAACTAACACCGTTCGAAATAAATGTTGTCAATTACAAC
e caePb3.Scfld02_0       3536955   0 +  4147112 C
e caeJap4.Scaffold18194   388210  13 +   823664 I
e cb4.chrX              10580153   0 + 21540570 C
e caeRem4.Crem_Contig0   2052957   0 -  4500979 C

a score=330.000000
s ce10.chrX              5251557 10 + 17718866 AGAATTTATT
s caeRem4.Crem_Contig0   2052957 10 -  4500979 aaaacttgat
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3536955  0 +  4147112 C
e caeJap4.Scaffold18194   388210 13 +   823664 I
e cb4.chrX              10580153  0 + 21540570 C

a score=-1537.000000
s ce10.chrX              5251567 25 + 17718866 ----------TTTTATGCG---AACTTAAAATTGAATT
s cb4.chrX              10580153 32 + 21540570 ------CAGTTTTCATTCAGAGTATtgaatgatgattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2052967 30 -  4500979 tttgagCGATCTTCATCAA--------AATGTTAATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3536955 25 +  4147112 ----------TTTTATCTG---AGTTTAACAAGGAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   388210 13 +   823664 I

a score=18072.000000
s ce10.chrX              5251592 182 + 17718866 TGATATTTTCCAGCGAAAGCATCGAAAGCTGAAAAAAGTCACAAAAGTCACCGAGGCTCCAGCAGAAGT-----------------CACAGTACCCACG-GAAATTGTTACTGAG---CCAACA---------------------------ACTGAATCCGCAACAA---------CTCCCACTACTACCACAACAATTTCCACCACCCCATTAGTCACAACTACACCACCAACAGCT---------------------------------C
s cb4.chrX              10580185 164 + 21540570 ttttgattttcagcgaaaacaTCGCAAGTTGCGTAAAGTCACAAAAGcaacagaggctccgacagaggctccaacagaAGT-----CACAACTGTCAAC-GAAATCGTAACCGAA---CCGTCT---------------------------ACTGAGACATCCTCA---------------------------GAGGCATC------------AACGACGCCCTCCACAACCACACCT---------------------------------C
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2052997 228 -  4500979 T-----GTTTCAGCGCAAGCATCGCAAATTGCGGAAGGTAACAAAAGTCACAGAGGCTCCGACAGAAAC-----------------CACAACTGTCACC-GAAATAATAACCGAA---CCGTCTACTGAATTGTCAACTACTGAACCAATCACTGAACCATCCACA---------------GCTGCTCTTACTGAGACTTCTACTCTTCA---AACCACCACCCCAGTCACCACACCTGTGGCATCTACTCCAATCAGTGTAGTTACTACAC
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0       3536980 202 +  4147112 T-AAGAATTTTAGCGCAAGCATCGCAAGCTGAGAAAAACCACAAAAGCCACAGAAGCTCCAACTGAAATTCCAACAGAACTTCCCACACAACCATCAACAGAAACCCCAACTGAGAACCCAACT---------TCA---------------ACTGATCTGTCAACTA---------TCATTGATATTATAACTGAAGCATCTTCCACTGA---AACTTCAACTACACCAACCACGACT---------------------------------C
i caePb3.Scfld02_0      C 0 I 53
s caeJap4.Scaffold18194   388223 185 +   823664 TGAGATTTTTCAGAGAAAGCACCACAAGCATCGTAAGATTACTAAAGCAACGGAAGCTCCTGCAGAAGT-----------------GGTGACCATTCAT-GAAATTCCTACCGAG---CTTCCA---------------------------ACTGAGTCTTTCACAAGCCCAAGCTCCTCTCCTACAAAGACGACAACTTTTGTTCCTCC---AACCACTACCACGACCACCGCTG------------------------------------
i caeJap4.Scaffold18194 I 13 C 0

a score=-4501.000000
s ce10.chrX              5251774 17 + 17718866 AATCTGCAATTGTAATT---
s cb4.chrX              10580362  4 + 21540570 A------------AAT----
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2053237  5 -  4500979 A------------CATT---
i caeRem4.Crem_Contig0  I 12 C 0
s caeJap4.Scaffold18194   388408 14 +   823664 ------CTTTTCCAACCGTT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3537182 53 +  4147112 I

a score=144734.000000
s ce10.chrX              5251791 496 + 17718866  
s cb4.chrX              10580366 552 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2053242 559 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3537235 554 +  4147112  
i caePb3.Scfld02_0      I 53 C 0
s caeJap4.Scaffold18194   388422 482 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=139702.000000
s ce10.chrX              5252287 198 + 17718866 GCTATTAAA----ATCGAAGCCACATAT----------TTTTATAGGGAATTTCTTCACCGT---CCGCTGCAGCCGTAGAGCCGACAAAAGAACAACTGGACAAAGTTTGCGAATACGTGGGCAAAATATCCAAATCATTTGGAATCAAAGACCTTGTCGGATTCGCCAAGAACAATTGCCCTCTGGTGCAGAGCTTCCATCCAGCGGTATATC
s cb4.chrX              10580918 190 + 21540570 Gccattaaatatttttcaagccaaaatt----------ttttatagg------CTTACCCAT---CCACGGC------TGAACCGACAAAGGAGCAATTGGACAAGGTGTGCGATTATGTGGCCAAGATCTCAAAGTCGTTTGGAATCAAGGACCTTGTTGGTTTTGCTAAAAACAACTGCGCGTTTGTTAAGAGCTTCCACCCAACGGTATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2053801 202 -  4500979 GCCATTAAA----CTCAAAGCCACACTTTTATACACACTTTTACAGGGAA---TTTCCCCGTCCACCACTGC------TGAGCCGACAAAAGAACAATTGGACAAAGTTTGTGACTATGTGGCCAAGATCTCAAAGTCGTTCGGAATTAAAGACCTTGTTGGATTTGCAAAGAACAATTGTGCATTTGTAAAAAGCTTCCACCCAACGGTAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527         0 187 -    90967 GCTATTAAA----CACGATGCCACGTTTTTA------------CAGGGAA---CTTCCCCGT---CCACAAC------TCAGCCAACAAAGGAACAATTGGATAAAGTCTGCGATTATGTTgccaaaatttcgaaatcattCGGAATCAAAGATCTTGTCGGCTTCACCAAAAACAACTGTGCATTTGTCAAGAGTTTCCATCCAACGGTAGTTC
i caeSp111.Scaffold527  N 0 I 29
s caePb3.Scfld02_0       3537789 191 +  4147112 GCTATTAAA----CTCGAAGCCACACTTTTATAC----TTTTGTAGGAAA---TTTCCTCGT---CCACATC------TCAGCCGACAAAGGAACAATTGGACAAAGTGTGTGATTATGTTGCCAAGATCGCGAAATCGTTTGGTATCAAGGATCTCGTTGGATTCACCAAGAACAACTGTTCATTTGTGAAGAGTTTCCATCCAACGGTA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   388904 188 +   823664 CTCATTAAA----ATCATACACGTGTTT----------ATTTGCAGGGAA---TTTCTTCGT---CGACAAC------GGAGCCAACCAAGGAGCAACTCGACAAAGTGTGCGACTACGTggcaaaaatttcaaagtcaTTTGGGATTAAAGACCTTGTTGGATTCGCCAAGAACAATTGCTCTTTTGTAAAGAGCTTCCATCCATCGGTTTGT-
i caeJap4.Scaffold18194 C 0 C 0

a score=-11635.000000
s ce10.chrX              5252485 37 + 17718866 TCTCGAATTTATAGTCTTTTTGCATTCAAGTATTCTA----------
s cb4.chrX              10581108 18 + 21540570 ----------------AATTTGAA---AAGGAATCAA----------
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   2054003  9 -  4500979 ----------------ACTT------------ACCAA----------
i caeRem4.Crem_Contig0  C 0 I 21
s caePb3.Scfld02_0       3537980 29 +  4147112 -----ATACTATAAGTTCTTTGAA---AACACATTCA----------
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   389092 37 +   823664 --TCAAATGACTAATTTAATTGTT--------ATCAAAcatgtttta
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527       187 29 -    90967 I

a score=307614.000000
s ce10.chrX              5252522 753 + 17718866  
s cb4.chrX              10581150 777 + 21540570  
i cb4.chrX              I 24 I 12
s caeRem4.Crem_Contig0   2054033 781 -  4500979  
i caeRem4.Crem_Contig0  I 21 I 12
s caeSp111.Scaffold527       216 732 -    90967  
i caeSp111.Scaffold527  I 29 I 19
s caePb3.Scfld02_0       3538017 794 +  4147112  
i caePb3.Scfld02_0      I 8 I 97
s caeJap4.Scaffold18194   389129 778 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-24264.000000
s ce10.chrX              5253275 71 + 17718866 CTCTCTT------------------------TTTCAAAATTTCG---TTCAATTCCTGATTCTCGCATTCTCA--TTGCCTTTACCCCATC------ATTTA----CAAG
s cb4.chrX              10581939 97 + 21540570 CCCGCTTGGCAAAAACGGCATCTTGTTA--ACTTTTGAATACTG---TACTGTTCATATTGCTCA--CTCCGAGCTCTTCTTTCGTGTTCC------ATTTTGCTCCGAA
i cb4.chrX              I 12 I 11
s caeRem4.Crem_Contig0   2054826 71 -  4500979 cataCTT---------------TCGTTG--CC---------CTG---AGCTTTCCCTCTTCCTGAAGTTTCTGGCATACTGTAACTATTCC------CTTTT----CAAA
i caeRem4.Crem_Contig0  I 12 I 14
s caeSp111.Scaffold527       967 50 -    90967 --------------------------------------------------gtctcttttttcacagCTTCCATAATTCCTGTCCACgagag------aattt----caaa
i caeSp111.Scaffold527  I 19 I 1
s caeJap4.Scaffold18194   389907 83 +   823664 ----------------------ttgatgttttttttgaatattgaaATTGAAACCTTTTGAAACGTGTTTTAATCTTATTGTTAGTTGGTCTTTTGAATTTA----CAG-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3538811 97 +  4147112 I

a score=-6850.000000
s ce10.chrX              5253346 16 + 17718866 ----------------TATTCAAAACTAAAC-A
s cb4.chrX              10582047 16 + 21540570 ----------------TCTTCAAAAACGAACG-
i cb4.chrX              I 11 I 35
s caeRem4.Crem_Contig0   2054911 12 -  4500979 ----------------cctttaaaaaga-----
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold527      1018 15 -    90967 ----------------aactcggaAACATAA--
i caeSp111.Scaffold527  I 1 I 19
s caePb3.Scfld02_0       3538908 15 +  4147112 ----------------TATTTGAATCCATAA--
i caePb3.Scfld02_0      I 97 C 0
s caeJap4.Scaffold18194   389990 26 +   823664 TATCCGATGCTctcgttttttaaaat-------
i caeJap4.Scaffold18194 C 0 C 0

a score=1959.000000
s ce10.chrX              5253362 38 + 17718866 AGACCGTTCC----------ACA-------GTTATTAGATTGGCAGAATTAAGTC--
s caeRem4.Crem_Contig0   2054923 38 -  4500979 aaaccgtTCC---------GAAACCA---AGCT-----GTTGGCAGATTTCGTTC--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527      1052 44 -    90967 ATACCGTTTCCGTTCTTTTTAGAC------GTC-----GTTGGCAGATTTGAGAC--
i caeSp111.Scaffold527  I 19 I 2
s caePb3.Scfld02_0       3538923 34 +  4147112 GTACCGTTCC----------ATAC------GTT-----GTTGGCAGATATAATAC--
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   390016 39 +   823664 ---ccgttCT----------AAACTAGATAGGC-----GTTGGCACAACTGAAACTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10582063 35 + 21540570 I

a score=34444.000000
s ce10.chrX              5253400 133 + 17718866 TTGCACTAACCGGATTGCTTTTGCTTACTTATCATC----------AGTTTTGATAAC--GAAAA----ATTCCACGTGT---TGCCCGGTAACGCCTAAATACTATTATGACTAAG----TAACTTTTGCAAGATC------------GGGAAC---GTTCCCAAAATGA-----------------
s cb4.chrX              10582098 136 + 21540570 TTGCACTAACCGGATTGATTAT----CCTTATCAACCTCCACCCGAA--TTTGATAAGCCTCTTG----TTTCTACGTGTTTCATCGTGGTGACGCTTTCAAACGATTATGACTAACTATATGACTTGGAAATGATCT-----------GAGAACTT-------------------------------
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2054963 129 -  4500979 TTGCACTAACCGGATTGATTAT-----TTTATCATC----------A--GTTGATAAG--TCGTG----TTTCCACGTGT---ACCACGGTGACGCCTTTAACCGATTATGACTAAT----TGACTTTTGTAAGATCA-----------GGAAACTT-GTTTCGAATATga-----------------
i caeRem4.Crem_Contig0  I 2 I 69
s caeSp111.Scaffold527      1098 121 -    90967 TTACACTAACCGGATTGGTTA------CTTATCACCT------------TTTGATAAG--CCACA----TTTCCACGTGT---GTCGACGC-----CTTTAACCGATTATGACTAAT----TGACTATTGTATGATCA-----------TGgaactttgtttttcata--------------------
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3538959 134 +  4147112 TTGCACTAACCGGATTGATTA------CTTATCAACCATTC-----A--TTTGATAAG--CCTTCTCGTTTTCCACGTGT---GTCGAGGTGACG-CCTAAAACGATTATGACTAAC----TGACTTTTGTATGATCA-----------TGGAACTCTGTTGTTGAGA--------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   390055 155 +   823664 TTACACTAACCGGATTATTCT------CCTATCAGTCACAC-----A-----GATAAC----ATA----CTTACACGTGC---G--ATAATGACGCTTATATACGATTATAACTAAT----TGGCATTTGCAAAATTAGGAACGTTTCGTGGAAATTAGTTTGtcgaaaaacaaataaaatttttgca
i caeJap4.Scaffold18194 C 0 C 0

a score=-17862.000000
s ce10.chrX              5253533 57 + 17718866 AATCTGCACAAGTATTAGACTA-----CTGTAATT----TCCTAAATCT-AATGT---------GATTGTTGGTAT-----------
s cb4.chrX              10582234 35 + 21540570 AAT-------AATAGTGGAAcacgtttttg----------------------------------aatttttaatgt-----------
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold527      1219 50 -    90967 act-------AGTAATAGAAAT----GTTGCAA--------CTAGAAGT-ACTGTAAT------ggcttttgaaat-----------
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3539093 64 +  4147112 AATCAG---GAACGAAAGGAACGGTAGTTGTAA--------TTATATTG-AGGAtagttttcggaattttttcaat-----------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   390210 65 +   823664 ---------aagttgCAAGAAA----GTTGGAAGTATCATTTTCTATTTCAATGT---------GGTTTTTGATTAAATAATAATCT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2055092 69 -  4500979 I

a score=-5751.000000
s ce10.chrX              5253590 285 + 17718866 TAGTTGCGTCACAACT-AGCGGCGGGC------ATTTTCTTATCAAAAA------GAAAATGTACG---GTGGCAC------TG----------GATACGACTTTTAGAAACC--------------------------AAACATTCCAGGCTCGATTATTTTT-------------CAACCTATTAGA------------------------AGTTCTGGGA-----------------------AAAAAC----------------------------------------TGAGAGACATG--ACCTTAAAAAATAAACCAATGAAAAGTTT----------------------------------CAGGCGTTGTGGCGGCA---CAAAACCCAAGTTTAACGGCATGCGATATCAATAACCAGCTAAATGTTTGTCAGAGTCAGTTCAATCAACTTTTGGGATTTGATGGTAATGAAA
s cb4.chrX              10582276 266 + 21540570 -GAGTGC----------AGTAGCAGATGGCAAAAGATctttatcagaa-------aaaagtt---gga-gcAGAATGAaaggaa----------aatagaattttaaaaaaatgttc----------------------agaactCAGA----------------------------AGATCAGTTGTA---------------------------CCCA--------------------------AAGAAT----------------------------------------TCCCAGATCTG--CCGATATCCAAAAGAAAT--CTCTAATTC----------------------------------CAGGTGTGGTTGCCGCT---CAGGACCCGCGACTCACGGCGTGCAATGGCGGCAACAGTCTCAACACATGCCAATCGCAGTTCAACACTAAAATGGGCTTCGACCGTAATAAAA
i cb4.chrX              I 7 I 36
s caeRem4.Crem_Contig0   2055161 425 -  4500979 tgtttgCGTCACACAT-AGTAGCAATT------AGGTTCTTATCAGAAACGTGGGAAAAGTG---GCATACGGCAAGTTAGGCATTTTCAAAGTAgtagaaatgtgaaaaaccaCTCTTTGGTCTTGTATTTCgtttgaagatttcaaa-------ttcTTGGC-------------ACGCAAATTGTA--------AACTGGTATTGTTTCTAGGCCCAGCT--------------ATCGTcgctaaaaatagaaatatatttggggtactgtagtttcgaAAGTTTATGATCATAACTTTGGAACAGTCTACAAAATGACTGCCTCCAGCTCAATTTGGATTTCCGTCAGTGCACCATCATGTTTTCAGGTGTTGTGGCCGCTCAACAGAATCCTCAACTCACCCCTTGTAATGGCATCAACAGTCTCAACACTTGCCAAGGGCAGTTCAATACCAAATTGGGTTTCGATGGTAA-----
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold527      1270 252 -    90967 tgattgcGTCACGCAT-AGTAGTAGAA------AATTTCTTATCAGAAACGTGGGGAAA------G---GTGGCAAGTggcaga----------aataaaa--------------------------------------aaagttgacA-------TTCTTTAA-------------------------------------------------AATGCCAAAA----------------AGCCTTTGG--------Atatt-----------------------------------agatttt--tt-----------------------attt-----------------------tagagtATTTCCAGGCGTCGTTGCTGCT---CAAGATCCCCGTTTGACGGCGTGTGATGCTGGCAACAGTCTCAACACTTGCCAATCGCAATTCAACACCAAGATGGGGTTCGATGGTAATAAAA
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3539158 387 +  4147112 tgattgcGTCACATTCAAGCTGCGTAG------AATTTCTTATCAGAAACGCGGAGGAAATT---A---TTGGCACGCGAGAAG----------AATAGAACTTTGAAAACCT--------------------------AGAGAAGTTA-------TTCTTCgattcaaaaacatgaaaacaactTGAGCTGACCACAGCTGGCTTGTGCTCCAGTGCAAAAGTGAACAGATGATCATCAGCTCTTAGCAACAGAAATATTCtgagagaaattttgattc------------tgaaagatCTC--TCTACATTCCTAAagacaatttcaaattt-----------------------ctcaataCTTCCAGGTGTGGTGGCCGCT---CAAGATCCACGTTTGACTGCTTGCGATGCTGGCAACAGTCTCAACACTTGCCAATCGCAATTCAACACCAAAATGGGTTTCGATGgtaataaaa
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   390275 216 +   823664 CGTTTGCGTCATATTG--------GAT------CGTTATCTTTAAAAAG------GAGAGTG---G---AATGAATGCAATTAA----------cacaaaagtttaaaaagtcATTT----------------------CTAGGTCATA-----------------------------------------------------------------------------------------------------------------------------------------------TAATGAATCAA---------------------------ATTT--------------------------------TTAAGGAGTGGTAGCGGCT---CAAAATCCCCAACTGAGAGCTTGTGATGC---CACCCAACTCAACACTTGCCAATCGCAGTTCAACACAAAATTGGCCTTCGATGGTAATAAAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-794.000000
s ce10.chrX              5253875 3 + 17718866 CTG
s caeRem4.Crem_Contig0   2055586 2 -  4500979 -TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527      1522 2 -    90967 -TC
i caeSp111.Scaffold527  C 0 I 33
s caePb3.Scfld02_0       3539545 2 +  4147112 -aa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   390491 3 +   823664 CCG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10582542 36 + 21540570 I

a score=-3837.000000
s ce10.chrX              5253878 26 + 17718866 AAAAATAGAAT-----------TAAGCACAAAAGTTT---
s caeRem4.Crem_Contig0   2055588 37 -  4500979 AAAAATAGAGTGTCGTCTTTGACAAGCGCGATAAcgt---
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3539548 30 +  4147112 -------ttgtgcCGCCTTGAGCATCGTCGATAACGT---
i caePb3.Scfld02_0      I 1 I 2
s caeJap4.Scaffold18194   390494 26 +   823664 ------------TTGCGTCGAGTGA--AAGATAACGTGAC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10582542 36 + 21540570 I
e caeSp111.Scaffold527      1524 33 -    90967 I

a score=-45.000000
s ce10.chrX              5253904 3 + 17718866 TGG
s caeJap4.Scaffold18194   390520 3 +   823664 CGt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3539578 2 +  4147112 I
e cb4.chrX              10582542 36 + 21540570 I
e caeSp111.Scaffold527      1524 33 -    90967 I
e caeRem4.Crem_Contig0   2055625 1 -  4500979 I

a score=110885.000000
s ce10.chrX              5253907 134 + 17718866 TGTTTCAGCTTCTCTCGGTGCTGCCAAATATCAAGACTTGAGAAGTGCCATTGAGCAGTCGTATGCCAATAACCAAGCATACGGGCTTCTTACAACTTGCGATGCCTTCAAGCAGTACAAGCAGTGCTAGTAAG
s cb4.chrX              10582578 134 + 21540570 CTTTATAGAATCACTCGGCGTTACCAAATACCAAGACTTGAGAAGTGCCATTGAGAAGTCGTTCGCTGACTACCAAGCTTTGGGACTTTTGAACATTTGCGAGGCATACAAGGAGTACCAGCAGTGCTAGTAAA
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   2055626 134 -  4500979 attttcagcttcactCGGCGTGGCCAAATACCAAGACTTGAGAAGTGCCATTGAGAAGTCTTACGCTGACAGCCAAGCTTACGGTCTTCTCAAAACGTGCGAGGCTTACAAGGAGTACCAGCAATGCTAGTAAG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527      1557 134 -    90967 tgttttagCTTCACTTGGCGTGACCAAATATCAAGACTTGAGAAGCGCTATTGAAAAATCCTACGCTGATTCTCAAGCTTATGGGCTTCTTCAGACATGCGAAGCTTATAAGGAGTACCAGCAATGCTAGTAAG
i caeSp111.Scaffold527  I 33 C 0
s caePb3.Scfld02_0       3539580 134 +  4147112 TCTTTCAGCTTCACTCGGTGTGACCAAATATCAAGACTTGAGAACTGCCATCGAAAAGTCCTATGCTGATTCTCAAGCTTACGGACTTCTCCAAACTTGTGAGGCTTACAAGGAATACCAGCAGTGCTAGTAAG
i caePb3.Scfld02_0      I 2 I 16
s caeJap4.Scaffold18194   390523 134 +   823664 ttttttAGCCTCGCTCGGTGTAACCAATTACCAAAGCTTGAGAATTGCGATTGAAACGAAGTTCGCTAACGGAGCTACACGTGGAATTCTCGACACCTGCGAAGCATACAAAGAGTATCAACAATGCTAGTGAG
i caeJap4.Scaffold18194 C 0 I 5

a score=-25145.000000
s ce10.chrX              5254041 124 + 17718866 TGACATAGT----TTGCAATGTTGTGAGATTCACAATGTGCGACGGGAatatctcagtcggtagtgtggtgatcgcaagcaatcatgagaccactagttcaagtcctgcctttccctaggatcaccca
s cb4.chrX              10582712  17 + 21540570 -GA---------------CTTTTGTAAATGAGA-----------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2055760  16 -  4500979 -AAATTa------ttg--cttttgt-------------------------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527      1691  37 -    90967 ---AACA------CTggatttttgtttatttca----------------------------------------------------------------------------cTGTCTCTATTAT------
i caeSp111.Scaffold527  C 0 I 16
s caeJap4.Scaffold18194   390662  18 +   823664 --------TGACACTGATTTTTTCTA------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold18194 I 5 C 0
e caePb3.Scfld02_0       3539714  16 +  4147112 I

a score=-806.000000
s ce10.chrX              5254165 34 + 17718866 acctagcttgggaattagaggaatccactaatgg
s caeJap4.Scaffold18194   390680  5 +   823664 ----------------------------TAatg-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3539714 16 +  4147112 I
e cb4.chrX              10582729  0 + 21540570 C
e caeSp111.Scaffold527      1728 16 -    90967 I
e caeRem4.Crem_Contig0   2055776  0 -  4500979 C

a score=-12403.000000
s ce10.chrX              5254199 104 + 17718866 CTCGTGGCTTGAAACTAAAGCCTAGTGGGAGTTTAAAAACGGAACACCCTTTGATCCTTTAATTTTTACATCTCAAATCAACTGATTTATAGCCAACCAAAAGA
s cb4.chrX              10582729  39 + 21540570 ----------------------------GAGtgcaaaa---------------------caattttt-------------gtgaattttcagt--ACAGATGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2055776  37 -  4500979 ------------------------------tttttcaa---------------------taactcaT-------------TCTCATTTCCAGT--ACTGACGG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3539730  35 +  4147112 --------------------------------CCATAG---------------------TCAATTTG-------------ATTGCTTTTCAGC--ACAAATGG-
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18194   390685  25 +   823664 -------------------------------------------------------------attttt---------------tgtattttagc--ACTGAGGA-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527      1728  16 -    90967 I

a score=92459.000000
s ce10.chrX              5254303 199 + 17718866 ACAGTTCTACGCATGTGCTCAGAACCCATACGGTCTTCTAACTGGAACCAAGTAAGTTCTCAATTCAA---------------------------------------------TATATACTGTAA------CAGTTTTTG---TCT-------------------GTTCTTCAGCAACAACGGCGCCCCACTCACACAGGATCAGGCTAATGGATACGTAAAAATCTGGAACCAACTTGATTTTGTCTGTGGTGCTGGATTCTCGAGTAAGA------------------------------------------------
s cb4.chrX              10582768 198 + 21540570 TCAATTCTTCGCATGCGCTCAAAATCCGTTCGGTCTCCTCACAGCTACTAAGTGAGT------TTCGC-----------------------------------------------TTCTTTATTAACGATTTTCTAATTG---TATT------------------AATTTCCAGCAACGGCGGAGTCCAATTCACTCAAGACCAGGCCAATGGATACGTCAAGATCTGGAACCAACTTGATTTCGTTTGCGGAGCCGGTTTCTCTAGTAAGA------------------------------------------------
i cb4.chrX              C 0 I 28
s caeRem4.Crem_Contig0   2055813 193 -  4500979 TCAGTTCTTTGCCTGCGCTCAGAATCCATTCGGAATTATCACTGCCACCAAGTACGT------TT-GA-----------------------------------------------TATCCCATTA------TTCTGATTGC-TTTTC------------------GTTTTGCAGCAACGGAGGTGTTCAATATACCCGAGACCAAGCTTATGGATACGTCAAAATCTGGAATCAACTTGACTTCGTTTGTGGAGCTGGTTTCTCTAGTAAGC------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold527      1744 242 -    90967 ACAATTCTTCTCGTGTGCACAGAACCCATACGGTCTTTTGACAGCTACAAAGTAAGT----GATTCac---------------tttgatttgaaaattgcaaaTCCTTAAGAATACGCTTCCTTA------TAATGTTCGA--AATAgtagaatttaaaaat---gaatttcagcaACGGAAACACCCAGTTCACTCGTGATCAGGCGAACGGATACGTGAAGATTTGGAATCAACTTGATTTTGTTTGCGGAGCCGGATTCTCTAGTAAGA------------------------------------------------
i caeSp111.Scaffold527  I 16 I 21
s caePb3.Scfld02_0       3539765 260 +  4147112 CCAATTCTTCTCTTGTGCTCAAAACCCATACGGTCTTCTGACAGCCACCAAGTAAGT-----ATTCGTGGTTTCTGTGGCCTGTGCAATTGAATAACTAGAAATTCTCGGcactgttttttattg------atatgATTGC-TTATAGTATTTCTCACACCTTTAAACTTTCAGCAACGGAAACGTTCAATTCACCAGAGATCAAGCTAATGGATACGTCAAGATCTGGAACCAACTTGATTTTGTGTGCGGTGCTGGTTTCTCTAgtaaga------------------------------------------------
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18194   390710 252 +   823664 AAACTTCTTCTCCTGCGCCCAAAATCCATTTGGACTTCTGACTGCCAccaagtattt------tttaa------------------------------------------------atgtttttc------ttgtttttgagctatt-----tttcaaaaca---atattttAGCAATGGTAACACAAAATTCTCGCGAGACCAGTCCAACGGATATGTCAAAATCTGGAACCAACTTGACTTTGTCTGTGGTGCCGGATTTTCCAGTAAGTAACTTTTCTATTATCAAATCTCATTTGAATCAGTCAACCAATAGCTAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-19142.000000
s ce10.chrX              5254502 33 + 17718866 -------TTAGC-----------AATTAT--ACTGTA-----------------------------------ATACTGAATACTAGAA
s caeRem4.Crem_Contig0   2056046 45 -  4500979 -------CCAGCTC---------AATTAT--ATTGTATATCAAATATTC-----------------------TTCCTCAATATAAA--
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold527      2007 22 -    90967 -------CCAACCC----------------------------------------------------------Atcgagaaaacaaga-
i caeSp111.Scaffold527  I 21 I 74
s caePb3.Scfld02_0       3540060 77 +  4147112 -------acaacCCA--CAAAACAAGAAT--CTCGTGGCTAATAAGATCAACCTAAGCCATGAAGATGAGATATCGGTGAAACAACAC
i caePb3.Scfld02_0      I 35 I 40
s caeJap4.Scaffold18194   390962 88 +   823664 TTAGATTACAACCAAGCAAGAGAAACTTTCAATCACAGCTTAACATAACATTGAAGGGAATGAAAATTTACTGttgtaaatacataaa
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10582966 28 + 21540570 I

a score=109079.000000
s ce10.chrX              5254535 135 + 17718866 -----------TTGAATTTTCAGTCTTTGCCAACTCTGAAGTTTGCGGCTCTTCTGTCTTTAACAACCAGACAGCTGCAATGAGACAGTGCGACAATGACTTCAACGTGAAGTCCATGGCTGACCCAGCTCAAGCTTGCGCGTAAG
s cb4.chrX              10582994 135 + 21540570 -----------ttcctttttcagtcTTCGCCAACGCTGAAGATTGTGGATCCGCCGTTTTCAACAATCAAACCGCCGCCATGAGACAATGCGACAATGACTTCAATGTGAAAGCCGCTGCCGATCCAAATGAGGCTTGCGCGTGAG
i cb4.chrX              I 28 C 0
s caeRem4.Crem_Contig0   2056091 135 -  4500979 -----------CTATAATTACAGTCTTTGCCAATGCTGAAGTTTGTGGATCTTCTGTCTTCAACAACCAAACTGCTGGTATGAGACAATGTGACAACGATTTTGATGTCAACTCTAAAGCCGATCCATCCCAAGCTTGCGCGTGAG
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold527      2103 134 -    90967 ------------TGAACTTTCAGTCTTCGCCAATGCTGAAGTATGCGGCTCATCTGTTTTCAACAATCAAACTGCTGCCATGAGACAATGTGATAATGATTTTGATGTCAACTCGAAAGCTGATCCAACTCAAGCTTGCGCGTAAG
i caeSp111.Scaffold527  I 74 I 33
s caePb3.Scfld02_0       3540177 135 +  4147112 -----------GTGAACTTTCAGTCTTTGCCAACTCGGAAGTCTGTGGCTCATCTGTATTCAACAACCAGACTGCTGCCATGAGACAATGTGACAGTGACTTCGATACCAACTCCAAGGCTGACCCAAGCCAAGCTTGCGCGTAAG
i caePb3.Scfld02_0      I 40 I 1
s caeJap4.Scaffold18194   391050 146 +   823664 tatacatacatatgaattttcagttttcgcCAATGCTGAAACTTGTGCGTCTAACATTTTCAACAACCAGACGGCCGCCATGAGACAAATCGACTCTGATTTTGATACCAACGCAAAGTTGGACCCCGAACAAGCTTGCGCGTAAG
i caeJap4.Scaffold18194 C 0 C 0

a score=-6407.000000
s ce10.chrX              5254670 47 + 17718866 TTTTCAAGTTTTGTTTCCAATCAAAAAGAATAATGAATAATCTTAAC-------
s cb4.chrX              10583129 31 + 21540570 -CATTACACCT-----------ATACAGAat----atgaaaatctaa-------
i cb4.chrX              C 0 I 3
s caePb3.Scfld02_0       3540313 34 +  4147112 TTATCTAGCCT-----------GATCAGCAT--TAACcgatttctat-------
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18194   391196 31 +   823664 --------TCT-----------AAACGTAAC----TATGGCTtctaaaaacata
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527      2237 33 -    90967 I
e caeRem4.Crem_Contig0   2056226 37 -  4500979 I

a score=0.000000
s ce10.chrX              5254717 1 + 17718866 T
e caePb3.Scfld02_0       3540347 1 +  4147112 I
e caeJap4.Scaffold18194   391227 0 +   823664 C
e cb4.chrX              10583160 3 + 21540570 I
e caeSp111.Scaffold527      2237 33 -    90967 I
e caeRem4.Crem_Contig0   2056226 37 -  4500979 I

a score=207761.000000
s ce10.chrX              5254718 510 + 17718866  
s cb4.chrX              10583163 498 + 21540570  
i cb4.chrX              I 3 I 46
s caeRem4.Crem_Contig0   2056263 489 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold527      2270 458 -    90967  
i caeSp111.Scaffold527  I 33 C 0
s caePb3.Scfld02_0       3540348 466 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   391227 498 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-8592.000000
s ce10.chrX              5255228 44 + 17718866 TTAAAACTTGTGAAATATTTGTTTTAATCTTAT---------TTTTTTATTCC-
s caeRem4.Crem_Contig0   2056752 46 -  4500979 -------TTTTgagacagttttttttttctagtatTTTGGGATGTATTACTAG-
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold527      2728 33 -    90967 ---------ACGATacattgattttcttcttat---------taGAATAAT---
i caeSp111.Scaffold527  C 0 I 3
s caePb3.Scfld02_0       3540814 28 +  4147112 ----------------GTTGTTTTTTCACCGAC---------TGAACTTATGC-
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194   391725 37 +   823664 --------TAATAAGTACttttatcttttaaat---------ttaaacaCTTTT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10583661 46 + 21540570 I

a score=188763.000000
s ce10.chrX              5255272 409 + 17718866 AGGAGTCCAATCAGCCGGTCTAAACTGTGACTCGACGGTTTATTTTGAGTGCCAAACTGCTCTCAATGCGGTTTTGAGCATCAGCGACCCACAGCCATGGTTTGACCCCGAAAACTTCCGCAAGGAGGCAAGTTTT-TA----ATACAATAGTTTCCACGCTTGCCATTCCATGA-AATGATA---ACTGAATAAGGTGATATGAC-------GAAGG---------------GTGTGCATAGTGAAATGTGAAATGTGAGGTTTAGAAC-GTGT---CGATGATAACTTTTAAGTCAATGGGATTAATT---------ATGTCAT-----CATGATTGTATTATAATCTGATTTTTTGATTATCAGAAAAAAGA-------GCAAAAC----ACAAT-TATTGATTAAATTTAGGTGGAGACAAACTACCAGGCTCAAGGACCCAGTGGAATGCGTAAAGTTTGCAAGT
s cb4.chrX              10583707 389 + 21540570 AGGTGTACTATCCGGAGGTCTGGACTGCGACTCCACAGTCTACATGGAGTGCCAAGCCGATCTCAACAAAGCCTTGAGCATTGCCGACCCACAACCATGGTTCGAtcctgagaatttcagaaaggaGGCAAGTTTTCGAA---ATGCAAT------CATGCTTATCATTG-ATAGCAATGATAACTAGAAAATGAGGTGATATGACGATTATTGAAGAGTGCGTGTAGTGAATGTGTGTGTAG-GAAACATCAAA--------TTAGAAC----------ATAATAAGTTTAAAGCCAATAGGTTTAAAAGGTTTAAAAATGTCAT-----CATGAT-------------------TTG---------AAAAAGA-------TCAAAACACATACATT-TC-----------CAGGTTGAGACATACTACCAGAACCAAGGAGAAACTGGAATCCGCAAAGTTTGCAAgt
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   2056813 384 -  4500979 AGGTGTCACAGCTGGTGGTCTTGACTGTGACTCCACTCTCTACATGGAATGTCAATCTGACTTGAACAAAGCATTGACCATTTCCGACCCTCAACCATGGTTTgatcctgaaaatttcagaaagcagGCAAGTTTG-AAA---ATGCAATTATGTGCATGCCTACCATCG-ATGGCATTGATA---AGTGAATGAGGTGATATGACGATTATTGAAGA---------------GTGTGcgtag-aaaatatcaaa--------taagaacatttt---tgatgataagtTTTAAGTCAATAGGtttaaaa-gtttagaaatgtCAT-----GCTAAT------AAAAT-------ACTA---------CAAATGA-------ACAAAAC----ACGTT-TA-----------TAGGTTGAAACATACTACCAGAACCAAGGACCTGATGGAATCCGTAAAGTTTGCAGGT
i caeRem4.Crem_Contig0  I 15 I 33
s caeSp111.Scaffold527      2764 372 -    90967 AGGGGTACAGTCGTCTGGCCTTGATTGTGACTCAACAACCTATTTGGAATGCCAAACTGATCTCAACAAAGCTCTGAGCATTGCTGATCCACAACCATGGTTTGATCCTGAGAACTTTAGAAAAGAGGCAAGTTTG-AAATGCATGTG--------CATGCTTGCCATTG-ATGACAATGATA---ACAGTATTAGGTGATATGACGATTATTGAAGA---------------GTGTCCGcag-gaaaaattgaa--------ttagaAC-ATTT---TGATGATAAGTTTTAAGTCAATAGGTTTATAA---------ATGTCAT-----GCTGAT------CTAAT-GGATTATTT-------------AAGA-------TCGAAAC----ACATT-TA-----------TAGGTTGAAACCTACTACCAGAACCAGGGACCTGATGGAATCCGCAAAGTTTGCAAGT
i caeSp111.Scaffold527  I 3 C 0
s caePb3.Scfld02_0       3540854 389 +  4147112 AGGAGTACAAGCAGCTGGTTTGGACTGTGACTCTACCATCTACTTTGAATGCCAAAATGCTCTGAACAAAGCATTGAGCATTGCCGATCCACAGCCATGGTTCGATCCTGAGAACTTCAGAAAAGcggttagtttt-gaa---atgtg--------CATGCCTGCCATTGCATGGCAATGATA---AGTAAATGAGGTGATATGACGATTATTGAAGAGTGGGAAAGG-----GTGTGCGTAG-GAAATATTGAA--------CTAGAAC-ATTT---TGATGATAAGTTTTAAGTCAATAGGTTTAAAA---------ATGTCAT-----GATGAT------CTAACaagattatttt---------caaaaga-------gcATAACACATACATT-TG-----------CAGGTTGAAACATATTACCAGAACCAAGGACCAGATGGAATCCGCAAAGTTTGCAAGT
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194   391762 368 +   823664 AGGGGTTCAGTCTGCTGGATTGGATTGCGATTCCACCACCTACTTTGAATGTCAAGGAGAGCTGAATAAGAAACTTGGCATTGCCGATCCCCAGCCATGGTTTAACCCGGACGTTTTTCGAAAAGAGGTAAAATTA-GAG---ACT-------------------------TTATCTATTATA---AGT--ATTAAGTCATATgatgattttttgaaa---------------ctgt-tgCAA-GAGAAA-GAAA--------CGTGTAT-GCGTGTATGACAGTAGGTAGTAATCGGATAAAATTAG-----------TTGTCATTAAAAGATGAT------ATTATCATCGTGGCTA---------TCAATGACGTGGAGGCTTAAT----CTGTTATT-----------TAGGTAGAGAAATTCTACCAGAACCAAGGACCAGATGGTATCCGTAAAGTATgcaagt
i caeJap4.Scaffold18194 C 0 C 0

a score=-9916.000000
s ce10.chrX              5255681 34 + 17718866 CA------GTACTTCAC---TAGATACTCTCTCTCGAATCCTG
s cb4.chrX              10584096 18 + 21540570 -a------atattttc------------------tgaaactta
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold527      3136 32 -    90967 -AAAAACTATTCTTCAA---TAAAAG-------ATGAACACTA
i caeSp111.Scaffold527  C 0 I 8
s caePb3.Scfld02_0       3541243 26 +  4147112 -A------ATACTTCCA---AACAGG-------tttaaaaaaa
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18194   392130 33 +   823664 ga------gttttttaaatctatgttttctgttttcaaa----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2057197 33 -  4500979 I

a score=207457.000000
s ce10.chrX              5255715 734 + 17718866  
s cb4.chrX              10584118 446 + 21540570  
i cb4.chrX              I 4 I 5
s caeRem4.Crem_Contig0   2057230 460 -  4500979  
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold527      3176 467 -    90967  
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3541278 458 +  4147112  
i caePb3.Scfld02_0      I 9 I 29
s caeJap4.Scaffold18194   392163 459 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7628.000000
s ce10.chrX              5256449 29 + 17718866 CGGGTATTATTAAAAAACGCCAACCAAAC----------
s cb4.chrX              10584569 20 + 21540570 --ttgatatttcaaaaa----a---aaaa----------
i cb4.chrX              I 5 I 2
s caeRem4.Crem_Contig0   2057690 20 -  4500979 -----acatgtgaaaaa----attgaaat----------
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold527      3643 21 -    90967 ----tatttctggAGTA----ATCCAGga----------
i caeSp111.Scaffold527  C 0 I 11
s caeJap4.Scaffold18194   392622 30 +   823664 -----ATATTACAATGG----CTTTAAAACTAGTTGTCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3541736 29 +  4147112 I

a score=227120.000000
s ce10.chrX              5256478 344 + 17718866 TTACAGACAAGCCAATAAGTACTTGATTTGCTTCGAAACTCAGTTCAAAAACAACTGTGGTGAAAAATCAAACGATGCCATGTTCTGGGCTTGTGAATACTCAAGAGTCAATGTTTTTACTCGATTCCCTCAATGTGCAGCTAGATGTGTTTGTAAGTGAAACTTG--AAAAT----TGTGAAATCTAGTAAAATTGATTTT---GTTT-TTTTGCAGTGCCATATAGCGGAGGAATCATCGGATGAGTCGAATA------AAAC---GAAATGATGTC--A--GATAC-AAACAAATTA----------TTAACTTTTTGTCATTCAA---------TCTTAACTATGTATTATCA-TTTGTGATAAGAATAAA---------TTTT-----TATTACTGA
s cb4.chrX              10584591 346 + 21540570 atttagATTGGCCAACAAGTACTTGATTTGTTTCGAGACCCAGTTCAAAAACAACTGCGGTGACAAATCGAATGACTCCCAATTCTGGGCTTGCGAATATTCTCGTGTCAATATTTTCACCCGATTCCCGCAATGTGCTGCTAGATGCGTCTGTTAGTTTGACCAG-ATCTAC----TTCAA--TTTATTGATTTGC-TGAA---TTTT------CAGTGCCATACAGTGGAGGAATAATCGGATGAGAGAGGCTGtgtgaaaccaaaaaaatgatgTC--A--GAATCGAAACAAATTA-------TATTATAATAATTGTCAT-------------TCTAAACTGTGtattatca-tttttgataagaataaa---------ctat-----tattcctga
i cb4.chrX              I 2 I 946
s caeRem4.Crem_Contig0   2057722 333 -  4500979 ttttagattGGCCAACAAGTACTTGATCTGTTTCGAAAGTCAATTCAAACAAAACTGTGGTGACAAATCAAACGACGCACAATTTTGGGCTTGCGAGTATTCTCGTGTTAACATTTTCACCAGATTCCCACAATGTGCTGCTAGATGTGTCTGTTAGTTT--------TTCAC----TGTAAAGTTCAAAGAAATACATAAA---TTTT------CAGTGCCATACTCTGGAGGTATCATCGGATGAGTCGATTCGAGT--AATC---AAAATGATGTC--A--GAATC-AAAcaaatta----------tataatttttgtcat-------------tctaAACTATGTATTATCA-TTTGTGATAAGAATAAA---------CAAT-----TATTCCTGa
i caeRem4.Crem_Contig0  I 12 I 12
s caeSp111.Scaffold527      3675 336 -    90967 ttttagattgGCCAACAAGTACTTGATCTGTTTTGAAACccaattcaaaaacagcTGTGGTGACAAATCGAACGATGCTCAATTCTGGGCTTGTGAATATTCTCGTGTCAACATTTTCACAAGATTCCCACAATGTGCAGCCAGATGTGTCTGTGAGTTTCA---------------TTTAAATGTTGAATCAATAAAAACC---GTTTTAATTGCAGTGCCGTACACCGGAGGTATCATCGGATGAGTCAAATCGAAT--AATC---AACGTGATGTC--A--GAATT-CAAcaaatta----------tatattttttgtcat-------------tctaAACTATGTATTATCA-TTTGTGATAAGAATAAA---------CTTT-----CGTTTCTTa
i caeSp111.Scaffold527  I 11 C 0
s caePb3.Scfld02_0       3541765 348 +  4147112 TTCCAGATTGGCCAACAAATACTTGATCTGCTTTGAAACTCAATTCAAGAACAGCTGTGGTGACAAATCGAACGACGCTCAATTCTGGGCATGTGAATACTCCCGTGTCAATATTTTCACCAGATTCCCACAGTGCGCAGCTAGATGTGTTTGTAAGTTTAAACAA--TTAACTATGCGTAAATgtcaaatcaataaaaatc---gtTT------CAGTGCCGTACACTGGAGGTATCATCGGATGAGTCAAATGGAAC--AATC---AAAGTGATGTCAGA--GAATC-AAacaaatta----------tata--ttttgtCAT-------------TCTTAACTATGTATTATCA-TTTGTGataagaataaa---------tttttttactttttatta
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold18194   392652 372 +   823664 TTTTAGTTTGGCCAACAAGTACTTGATCTGTTTCGAGACAGAGTTCAAAAACAACTGCGGCGACAAATCAAACGATGCTCAGTTCTGGGCTTGCGAATATTCCCGTGTTAACATTTTCACCAGATTCCCTCAATGTGCAGCTAGATGTGTTTGTACGTTAATTTACAAACAAg----ggaaaaaatcataaaaataaataacaatatTT------CAGTACCGTACAATGGTGGAATCATTGGTTGAGGAA----------GACT---TCAGTAATGCC--ATCGAACCAAAACAAagcaatttttccattttatttttctttttttgaacttcTGACTCTAATTTGTGAATtatcattttttgataaaaataaaaattagacgtttt-----ttttccaaa
i caeJap4.Scaffold18194 C 0 C 0

a score=-887.000000
s ce10.chrX              5256822 6 + 17718866 GAAAAT--
s caeRem4.Crem_Contig0   2058067 6 -  4500979 gaaagt--
i caeRem4.Crem_Contig0  I 12 I 12
s caeSp111.Scaffold527      4011 5 -    90967 -acaat--
i caeSp111.Scaffold527  C 0 I 38
s caePb3.Scfld02_0       3542113 5 +  4147112 -GTAAT--
i caePb3.Scfld02_0      C 0 I 26
s caeJap4.Scaffold18194   393024 6 +   823664 --aaatgt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10584937 946 + 21540570 I

a score=734.000000
s ce10.chrX              5256828 3 + 17718866 GCC
s caeRem4.Crem_Contig0   2058085 3 -  4500979 gtt
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0       3542144 3 +  4147112 GTT
i caePb3.Scfld02_0      I 26 C 0
s caeJap4.Scaffold18194   393030 3 +   823664 gcC
i caeJap4.Scaffold18194 C 0 I 2491
e cb4.chrX              10584937 946 + 21540570 I
e caeSp111.Scaffold527      4016 38 -    90967 I

a score=-2005.000000
s ce10.chrX              5256831 32 + 17718866 ATCGGTATAGTATATGACAATCTATTGGTGTG
s caeRem4.Crem_Contig0   2058088 30 -  4500979 gaagGCATATTTTACAACG--CCATAAGCATG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3542147 27 +  4147112 TGAGCTATAAAAGTCAATG--TTAC-AGTA--
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e cb4.chrX              10584937 946 + 21540570 I
e caeSp111.Scaffold527      4016 38 -    90967 I

a score=-3742.000000
s ce10.chrX              5256863 34 + 17718866 -----GCGATGGG--GAACTTCATGA-----AAAGTTTTGAAAAAA--
s caeRem4.Crem_Contig0   2058118 35 -  4500979 ATCACACacagaa----actttaa-------aaaatcgtAGAGAGA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527      4054 35 -    90967 -----GCAATGGG-ATGACTTCAT-------CCAATGTTTTGAACAAA
i caeSp111.Scaffold527  I 38 I 758
s caePb3.Scfld02_0       3542201 41 +  4147112 -----ACAGTGAGCAGAACATCATGAAATTCCCATTGTTCAAATCa--
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e cb4.chrX              10584937 946 + 21540570 I

a score=-13975.000000
s ce10.chrX              5256897 224 + 17718866 --GGGTTTTGAAAT---------AAATATTGCCAATAGCTTTTTTGGGACGTTTTCAACATTT------GGTATATTAA----------------ACATTTTGGTA-----GGACAACAGATTATAAGCAAATTAT---------------TATTGAAAAAAAACT----ATTTTTTGACTGTGTATCTTTTATAAATTGTTTTACTTATTATGCAATATTTGAAATAAAAAATTA-GTTTTTTTTTCATTCG--TTTTAAAATTTCACCGTCAAATTCAAATA-------------------------------
s caeRem4.Crem_Contig0   2058153 302 -  4500979 GGATGTTTTGAAGTCGGTATATATTATATGGC----AGCATGTTGGTGGTCTCAttaattttcttcagaaaCATGTTCAAAAACAGGGCGTTGCCACATTATGAAT--TGTGGTCAATG----atatataaattattttagGAACTTTTGATAACAACTGAAGTTTTGTCATTTCCGAAAAGTGGGGCTCCTCTT-TTTAAT--GTTaatgaaatatgatttttcgtgaaactatatgattttttgtcaaaaactcattCAAATCTATCTTGCCAATTCATTCCACAGAAATGTCATGTTTAACTTTCCGGAGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3542242 193 +  4147112 -----------------------taatgttga----aaatttttgg--------atagtTTTC------AATCGATTCA----------------ACACTTCAAATCATGTGCACAATG-----------CATTACTTTTTTCACCT----CATTGagtgaaatattg--atttc----------acCTCACCTTATTCAATAAACTAATTGAA-ATGTTCTGTCACCAAAATTTATG-----------------tatttaaattt------caaaactatttcacA--------------CGTTTTCCGGTCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e cb4.chrX              10584937 946 + 21540570 I
e caeSp111.Scaffold527      4089 758 -    90967 I

a score=-1297.000000
s ce10.chrX              5257121 17 + 17718866 -CAAGGTT-CCGAAAATAC
s cb4.chrX              10585883 17 + 21540570 -CAAGTTATTGCaatgaa-
i cb4.chrX              I 946 C 0
s caeRem4.Crem_Contig0   2058455 17 -  4500979 AAGAGTTA-TGTAAGGTG-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3542435 17 +  4147112 CAGAGTTT-TTCAAGGTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeSp111.Scaffold527      4089 758 -    90967 I

a score=64977.000000
s ce10.chrX              5257138 140 + 17718866 TTTTTCCGCTTAG-CC-CATTTAATGCAATAATCAATGTCTTTTAAGCGTACAGG--ATTATTGATAATCACT--TCAACTGATAAG-GACTGCAATTCTTAATCCCATAAATGAAACATTTCCCTAG-CTTTTCCGTTCCACGACAT
s cb4.chrX              10585900 145 + 21540570 tttctgtttttagcCT-TTTCTAATGCAATAATCAATGACAGTTAAGCGTGCAGA--ATTATTGGTAATCCCCCGtgaactgataagaaatttCATTTCTTAATCCCATTGAAGAAACATTTTGCCGGCTTTCCCCGTTCCACGACAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2058472 142 -  4500979 TTTCCCTGTTTAG-CT-TATTTAATGCAATAATCAATGGCAATTGAGCGGGAAGAAGATTATTGTTAATCACT--TCAACTGATAAG-AATTTCATTTGTTAATCCCATAAGTGAAACATTTCTCTGG-TTTTTGCGTTCCACGACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527      4847 137 -    90967 TTTCCTCGTTTTG-CT-TTTCTAATGCAATC---AATGGCAGTTAAGCGTATAGG--ATTATTGGTAATCACT--TCAACTGATAAG-ACTTTCATTTGCTAATCACATAAGTAAAACATTTCTTTGG-CTTTTCCGTTCCGCAACAT
i caeSp111.Scaffold527  I 758 C 0
s caePb3.Scfld02_0       3542452 139 +  4147112 TTTCCCAGTTCAG-CCATTTCTAATGCAATCATAAATGGCAACTATGTGTACAAG--ATTATTTTTAATCATC--TCAACTGATAAG-AGTTTCTTTTGTTAATCTTGTAAATGAAGCATT--TTTGG-TCTTACGATTCCACGAAAT
i caePb3.Scfld02_0      C 0 I 5940
e caeJap4.Scaffold18194   393033 2491 +   823664 I

a score=207648.000000
s ce10.chrX              5257278 959 + 17718866  
s cb4.chrX              10586045 895 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2058614 899 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2043
s caeSp111.Scaffold527      4984 891 -    90967  
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3542591 5940 +  4147112 I
e caeJap4.Scaffold18194   393033 2491 +   823664 I

a score=38.000000
s ce10.chrX              5258237 1 + 17718866 C
s cb4.chrX              10586940 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527      5875 1 -    90967 C
i caeSp111.Scaffold527  C 0 I 5741
e caePb3.Scfld02_0       3542591 5940 +  4147112 I
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=381.000000
s ce10.chrX              5258238 43 + 17718866 CAAAACAGA--------TTAATGAGCAATTTTTATTTTTTCAGCATTCTGA
s cb4.chrX              10586941 47 + 21540570 TTATCCAAAAAgttgcttttttgaaatattttta----ttcagCATTGTGA
i cb4.chrX              C 0 I 30896
e caePb3.Scfld02_0       3542591 5940 +  4147112 I
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeSp111.Scaffold527      5876 5741 -    90967 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=0.000000
s ce10.chrX              5258281 1160 + 17718866  
e caePb3.Scfld02_0       3542591 5940 +  4147112 I
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e cb4.chrX              10586988 30896 + 21540570 I
e caeSp111.Scaffold527      5876 5741 -    90967 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=882.000000
s ce10.chrX              5259441 24 + 17718866 AAACACTCAGTAAACAC------CAATGAC
s cb4.chrX              10617884 30 + 21540570 AATCACTTTGCGAACACGGAAACCAATGAC
i cb4.chrX              I 30896 C 0
e caePb3.Scfld02_0       3542591 5940 +  4147112 I
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeSp111.Scaffold527      5876 5741 -    90967 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=273.000000
s ce10.chrX              5259465 1 + 17718866 T
s cb4.chrX              10617914 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3548531 1 +  4147112 T
i caePb3.Scfld02_0      I 5940 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeSp111.Scaffold527      5876 5741 -    90967 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=2913.000000
s ce10.chrX              5259466 9 + 17718866 TTTGTTCTT
s cb4.chrX              10617915 9 + 21540570 TTTGTCCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     11617 9 -    90967 tttgttctc
i caeSp111.Scaffold527  I 5741 C 0
s caePb3.Scfld02_0       3548532 9 +  4147112 TTTGTCGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I
e caeRem4.Crem_Contig0   2059513 2043 -  4500979 I

a score=11733.000000
s ce10.chrX              5259475 16 + 17718866 AAAAGTGTATTAAACA
s cb4.chrX              10617924 16 + 21540570 AGCGATGTATTAAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2061556 16 -  4500979 aaaaatgtattgaacA
i caeRem4.Crem_Contig0  I 2043 C 0
s caeSp111.Scaffold527     11626 16 -    90967 aaaaatgtattAAACA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3548541 16 +  4147112 AGAAATGTATTAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   393033 2491 +   823664 I

a score=370110.000000
s ce10.chrX              5259491 624 + 17718866  
s cb4.chrX              10617940 687 + 21540570  
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2061572 656 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold527     11642 652 -    90967  
i caeSp111.Scaffold527  C 0 I 40
s caePb3.Scfld02_0       3548557 661 +  4147112  
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18194   395524 656 +   823664  
i caeJap4.Scaffold18194 I 2491 C 0

a score=-1043.000000
s ce10.chrX              5260115 14 + 17718866 CGAGACACCCTTTG
s cb4.chrX              10618631 10 + 21540570 CCcgtcactt----
i cb4.chrX              I 4 I 1
s caeRem4.Crem_Contig0   2062232 14 -  4500979 CCAGTCACtttaac
i caeRem4.Crem_Contig0  I 4 I 15
s caePb3.Scfld02_0       3549231 13 +  4147112 -tgaaaacttttta
i caePb3.Scfld02_0      I 13 I 7
s caeJap4.Scaffold18194   396180 14 +   823664 agtgtcattttttg
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     12294 40 -    90967 I

a score=83891.000000
s ce10.chrX              5260129 317 + 17718866 TTTTTTATTT-------CAAATTTTT-------CTTTAGATTTT---GATAGTTGTGAC--------------ATTACTTTTTT---------------TTGAACAACTCGGTG-----------------------------------TTTTTTTCTGCAAAATAAATACGGTTT-----------TCAAATACAATTTTTTTTCAAAAAGGTACT------------GAAAGCACACTGAATGT-------CTGAAAG----CGGTCCAA-AAGAAAATTC-GGCAT---CTT----TCCGACAGGATGATTCATTATGAGTAAACATTATGCGTGGAAGCGCA-GCG--------CCCCCACAAGCCAATCTC-CCGACAAAAAATATCGTCC-CAATGTTGTGTTTGTGAA----TAC-AAGAAGGTACACTGCA----TTTCGAGT--TTTCAAGTTT
s cb4.chrX              10618642 304 + 21540570 tttctcattt-------ggtTCCCCT-------------ATTTTACTGAATTTCGTGTCTAAACAA--TTTGCTATAATATTTT---------------ATGTACAGAATGTT------------------------------------------TCTGTCAAATAAATGGTTGTT-----------TGAA--------TCTAttaaaagattttta------------gaat-------gaaagt-------ctgaaaaaagttaaagcAAGAAGAAAATGCTGACAT---CTT----GGC----GGATGATTCATTATGAGTAAACATTATGCGTGGAAGCGCA-AAggcgccccccccccccaggACAACCTC-CCGAC-AAAAATATC---------GTCGTGTTTGTGAA----TCCCTAGGAGGTACACTGCA----TTTCGAGTTCTCTCAA----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2062261 318 -  4500979 tttctcattt-------tgctTCTCCCTCTTCCCCCTAGATTTCATCTCATGTCGTGTTTAAAtga--tt---tatcttttttt---------------atGTACAGAATGTT------------------------------------CTCACCCTTGCtaaataaaccaatttt-----------taaaga----GTTTTATTCTGagcttgtct------------gaaa-------aaaaat-------ctgaaa-----cgaagagaagagaaaattc-gACAT---CTC----GCCGACAGGATGATTCATTATGAGTAAACATTATGCGTGGAAGCGCA-GCG--------CCCCCACAGGACAACCCCTCCGAC-AAAAATATCGTCCTTAGTGTCGTGTTTGTGAA----TCC----GAGGTACACTGCA----TTTCGAGT--TGCCAA----
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold527     12334 316 -    90967 ctctcttttt-------tcattttct-----------agacCCTATTTCaagttgttcaaaaat---------aatttgtttta---------------aTGTATACACTGGT------------------------------------CTATCCCTTGTCAAATAAACTGATTTTCCCCCTCCAAATACAAC----TGTCTACTTGAAGCATTGCT------------GAAA-------AAGCGT-------CTGAAAA----CGAGGTGA--AGAGAAGTT-GGCATCTCCTC----GCCGACAAGATGATTCATTATGAGTAAACATTATGCGTGGAAGCGCAGGCG--------CCCCCACAGGA-GACAACCCCGAC-AAAAATATCGTCCTTAGTGTCGTGTTTGTGAA----TCT----GAGGTACACTGCA----TTTCGAGT--TCCCAA----
i caeSp111.Scaffold527  I 40 C 0
s caePb3.Scfld02_0       3549251 307 +  4147112 TCCTTCGTTT-------CCAATTTCT-----------AGA-------TTTGGTTGTTCCTAACTG--------AATGTCGTTTT---------------ATGTACAGATTGTT------------------------------------CTCTCCTTTGCCAaataaactctttttttgc-------tcgaGT----TGGGTACTTAAAAcatgtct------------gaaa-------aaacatgaagatgctgaaaa----cgaagaga--agaaaattg-ggCAT---CTC----GCCGACAGGATGATTCATTATGAGTAAACATTATGCGTGGAAGCGCA-GCG--------CCCCCACAGGACAACCCCTCCGAC-AAAAATATCGTCCTTAGTGTCGTGTTTGTGAA----TCC----GAGGTACACCGCA----TTTCGAGT--TGCCAA----
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18194   396194 376 +   823664 -ttgtaatctAGAGTAGTGTatttct-------tttcaaactttttaaaaaaagatatttaaattaactt---catttttttttattcgatcTGTACAAATGAACATATTGTAAGCTAATTGTAAGCTTTCACTTTACTACTTACTACCTTTtcctttcaaaaataaatttatttg-----------ttcaaa----tgtacatacatattttgCTTTTCCCAACCGCAgaaa-------aaatgt-------ctgaaaa-----------acgTAACAATTC-AGCGC---TTCGAGAGGCAACAGGATGATTCATTATGAGTAAACATTATGCGTGGAACCACA-GCC--------CACACACATGTCAACC---CCGAC--AAAATACCGTCC-CAGT---GTATTTGTGAAATATCCT----TTGGTGCATTTTAGAGTTTGCGAGT--TT--------
i caeJap4.Scaffold18194 C 0 I 759

a score=12127.000000
s ce10.chrX              5260446 87 + 17718866 TTTTCCTCATTCCGGCACACCCACATTTCGTGAGCAAAGTTTAAGATTTTTGGTTCC------CATCAACTA---------ATTTTTA-AG---------ATTTTTT---------------TCATT---
s cb4.chrX              10618946 93 + 21540570 ------TCTTTCCGGCACACCCACATTTCGTAAGCAA----------TTT------T------CACAGAGAGCACC-----TTTCCCACAT-tcatgtgtgttttttttctgcttcttgcTTTCATC---
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   2062579 86 -  4500979 ------TCTTTCCGGCACACCCACATTTCGTAAGCAA----------TTT-----CC------CACAAAGTGCACCCACAATTTCCCA-AAGTCGTGTAGGTTTTTT-------------CCTCATC---
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold527     12650 90 -    90967 ------TCTTTCCGGCACACCCACATTTCCTAAGCAA----------TTTCC--TCCTACTCTCGCCAagttcattt----attttcacgG-TAGTG---GTTTT--------------TCCTCATCATT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3549558 87 +  4147112 ------TCTTTCCGGCACACCCACATTTCGTAAGCAA----------TTTTG--TTC------CATAGAGTACATAT----TTTCTCACGG-TAGTG---ATTCTTT-----------ATTCTCAACATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   396570 759 +   823664 I

a score=-127.000000
s ce10.chrX              5260533  9 + 17718866 ---TGTGTGCAA--
s caeRem4.Crem_Contig0   2062668 14 -  4500979 TGGTGCTTGGTGAG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold527     12740 14 -    90967 TGGTGCTTGGAAAG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3549645 14 +  4147112 CGTTGCTCTTGGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   396570 759 +   823664 I
e cb4.chrX              10619039 46 + 21540570 I

a score=25560.000000
s ce10.chrX              5260542 64 + 17718866 CATCTGGTTGAGTTTAGACATCTGGCAT----TATCTACC--ACTTCGAGACT--CATATTTTTTATTGCAT
s cb4.chrX              10619085 65 + 21540570 CATCTGGTCAAGTTTAGACATCTGGCGAAGTCTATCAGAC--ACCTCGAGACC--CGACGATTCAATTG---
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   2062682 66 -  4500979 CATCTGGTCAAGTTTAGACATCTGGCAA----TATCAACG--ACCTCGAGACTCACGACACTTCTATTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     12754 61 -    90967 CATCTGGTCAAGTTTAGACATCTGGCAA----TATCAACT--GCGTCGACAgtctcactttttcaat-----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3549659 64 +  4147112 CATCTGGTCAAGTTTAGACATCTGGCAA----TATCAAATACACATCGAGA----CTCTTTTTCGATTACAT
i caePb3.Scfld02_0      C 0 I 171
e caeJap4.Scaffold18194   396570 759 +   823664 I

a score=875.000000
s ce10.chrX              5260606 4 + 17718866 TGAA
s caeRem4.Crem_Contig0   2062748 4 -  4500979 CGAA
i caeRem4.Crem_Contig0  C 0 I 195
s caeSp111.Scaffold527     12815 4 -    90967 tgaa
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e cb4.chrX              10619150 0 + 21540570 C

a score=-1565.000000
s ce10.chrX              5260610 59 + 17718866 TGTTC----TTCGTCCATGTGACAAGGCTTGATGTTTTG------------GCAGACTTTCACATCAGCTAACCT
s cb4.chrX              10619150 70 + 21540570 -GTCCAGCGTACGTTTGTAT----AGGCTTCAGAAATTGTTTCCATCAATGTTGAACATTCGGATTACCtaatct
i cb4.chrX              C 0 I 51
s caeSp111.Scaffold527     12819 45 -    90967 ---------tgcGGCTCTAT--------TTCATGAAATG-------------TAGACACATACATGAACTTACTC
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e caeRem4.Crem_Contig0   2062752 195 -  4500979 I

a score=455.000000
s ce10.chrX              5260669 5 + 17718866 TATTT
s caeSp111.Scaffold527     12864 5 -    90967 TATTT
i caeSp111.Scaffold527  C 0 I 81
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e cb4.chrX              10619220 51 + 21540570 I
e caeRem4.Crem_Contig0   2062752 195 -  4500979 I

a score=0.000000
s ce10.chrX              5260674 828 + 17718866  
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e cb4.chrX              10619220  51 + 21540570 I
e caeSp111.Scaffold527     12869  81 -    90967 I
e caeRem4.Crem_Contig0   2062752 195 -  4500979 I

a score=281.000000
s ce10.chrX              5261502 89 + 17718866 TTCAAATTTTAAACTTTTAA-ATTTACAGTCCTAGAAAAAACTAAGTTGCTGAAAACTTTTCTCAAACAATATTTA-CTTATTTCTCTGGT
s caeSp111.Scaffold527     12950 91 -    90967 TCTAAACATTGAACTGGAAATATCCAGATTccataaaaatatttgtttttcaatgactCACCTctcccaatttttttccaatatccCAATT
i caeSp111.Scaffold527  I 81 C 0
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e cb4.chrX              10619220 51 + 21540570 I
e caeRem4.Crem_Contig0   2062752 195 -  4500979 I

a score=-941.000000
s ce10.chrX              5261591 4 + 17718866 TCTT---
s cb4.chrX              10619271 4 + 21540570 ---TCCA
i cb4.chrX              I 51 C 0
s caeSp111.Scaffold527     13041 4 -    90967 TTGT---
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I
e caeRem4.Crem_Contig0   2062752 195 -  4500979 I

a score=1740.000000
s ce10.chrX              5261595 5 + 17718866 CCAGT
s cb4.chrX              10619275 5 + 21540570 CCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2062947 5 -  4500979 cCAGC
i caeRem4.Crem_Contig0  I 195 C 0
s caeSp111.Scaffold527     13045 5 -    90967 TTAGT
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3549723 171 +  4147112 I
e caeJap4.Scaffold18194   396570 759 +   823664 I

a score=191276.000000
s ce10.chrX              5261600 725 + 17718866  
s cb4.chrX              10619280 750 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2062952 768 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     13050 764 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3549894 784 +  4147112  
i caePb3.Scfld02_0      I 171 C 0
e caeJap4.Scaffold18194   396570 759 +   823664 I

a score=178637.000000
s ce10.chrX              5262325 276 + 17718866 AAAAGTTAAACATTGTAGCCAGAGAGCGCAACG----AGGCAAAAAGTGTTGGCAAATAGTTTA-GTTAGG-A--------CGAAAGAAAACA------CAGAGA-GAGAGGATGATAGAAAGAGACAACGCGCGAACC-GGGAGAAGACAGGCC--CC-CGGGAAGGGGCTCAAGAGACAG------AG-----AGATGAGGAAA---------GTCAAAAGCAAAAGCTTGCAC--GG----------GTTGAAGAAGAGGGAACTGTTGCACCGCGCGAGTGTGTGGCCACCA--------------CACTCATTTACTCATT-GATCTATTTCGCGCATTTTT-A
s cb4.chrX              10620030 298 + 21540570 AAAAGTTAAACATTGTAGCCACGGAGCGCAACG----AGGCAAAAAGTGTTGGCAAATAGTTTAGGTTAGCAAAGGAAGCGCAAAGGAAAACAtcgagagagaaa-aataggGTAA-------CGACAGCA---GCGTT-AGGGTTAGACAGGCC--CTACCGGT--GCGCTCAAGAGACAT------AGGAGGAAGATGAGAAAAGGAAGATTGGCGAAAAGCAAAAGCTTGCAC--GGAAT--------------AAGAGAGAACTGTTGCACCGCGCGAGTGTGTGGCTAGCAGTCA---------CCACTCATTTACTCATTCGATCTATTTCGcgcattttcat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2063720 276 -  4500979 AAAAGTTAAACATTGTAGCCACGGAGCGCGACG----AGGCAAAAAGTGTTGGCAAATAGTTTA-GTTAGC-AAGGCAACGCaaaggaaaaca-------gaaaa-tatagGGGAA-------AGACAGC----GCAAT-GAAGTAAGACAGGCC--CC-CGGGA--GCGCTCAAGAGACAG------AG-----AGATGAGAAAA---------GTCAAAAGGAAAAGCTTGCAc--ggagtt------gaagaagaagagggaacTGTTGCACCGCGCGAGTGTGTGGCCACCA--CG---------CCACTCATTTACTCATT-GATCTATTTCGCGCATTTTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     13814 274 -    90967 AAAAGTTAAACATTGTAGCCACGGAGCGCAACG----AGGCAAAAAGTGTTGGCAAATAGTTTA-GTTGGG-AAAGCAACGCAAAggaaaaca------gagaga-aagaaggtaA------------------AAGATGGGGAGAAGAGAGGCCCTCC-CGGGA--GCGCTCAAGAGACag------ag-----agatgagaaaa--------aggcaCAAGGAAAAGCTTGCAC--GGAGGA------GTTGAAGAAGAGGGAACTGTTGCACCGCGCGAGTGTGTGGCCATAA--CG---------CCACTCATTTACTCATT-GATCTATTTCGCgcatttta--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3550678 263 +  4147112 AAAAGTTAAACATTGTAGCCGGTGAGCGCGACG----AGGCAAAAAGTGTTGGCAAATAGTTTA-GTTAGC-AAGGCAACgcaaaagaaaaca------gagagagaagaaggtaA------------------AAGAT-GGGAGAAGACAGGCC--CC-CGGGA--GCGCTCAAGAGACAG------AG-----GAA--------------------ATAGGGAAAAGCTTGCAACGGGAAGA------GTTGAAGAAGAGGGAACTGTTGCACCGCGCGAGTGTGTGGCCACAA--CG---------CCACTCATTTACTCATT-GATCTATTTCgcgcatttta-t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   397329 276 +   823664 aaaagttaaac-----------gAAGCGCGACGAAGCAAGCAAAAAGTGTTGGCAAATAGTTTA-GTAAGA-AAGGCAATGCAAAAGAAAACA------CATAGA-GAGC------------------------GCACT-GATGGAGG---------AC-CTGGA--GCGCTCAAGAGAAAGGCGGAAAG-----AGATGAGAAAT---GCACAGGAAAGAAGCAAAAGTCTGCAC--GGGGAGTTGAACGAAGAAAGGAAGCGAACTGTTGCACCGCGCGA--GTGAGGCCAACT--CGGTACACGCTTCACtcttttatttatt-gattcaTTTAGCACTTTTCC-A
i caeJap4.Scaffold18194 I 759 I 949

a score=8726.000000
s ce10.chrX              5262601 11 + 17718866 TTTTGTTAGGT
s cb4.chrX              10620328 11 + 21540570 ttttgttggaT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2063996 11 -  4500979 TTCTGTTAGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     14088 11 -    90967 ttttgttagAT
i caeSp111.Scaffold527  C 0 I 275
s caePb3.Scfld02_0       3550941 11 +  4147112 ttttgttagaT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I

a score=-561.000000
s ce10.chrX              5262612 2 + 17718866 AT-
s cb4.chrX              10620339 2 + 21540570 AT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2064007 2 -  4500979 AT-
i caeRem4.Crem_Contig0  C 0 I 237
s caePb3.Scfld02_0       3550952 2 +  4147112 -TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeSp111.Scaffold527     14099 275 -    90967 I

a score=-1982.000000
s ce10.chrX              5262614  9 + 17718866 GCTTTTC---AA--------
s cb4.chrX              10620341  9 + 21540570 -ATATTT---GAG-------
i cb4.chrX              C 0 I 247
s caePb3.Scfld02_0       3550954 20 +  4147112 CATCTTCCTGGAGCATATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=-173.000000
s ce10.chrX              5262623 200 + 17718866 TAGT------CAATTCAACATTGACC--AAGAAATTGTTGGAGCTCTATTGAAAATATATGAAAAAGTTAGAGTCGA---CTGATAACGTCTAAATTTATTTCTTTTATCAGTTAGGTTTCCCCAAATCTGTTTTGTTCTGCGTTAGTGACATACCTGTTGAAGTACTGTACTTACAGTTTCAGAACTAATGTTAAGGTAGTTGCCCTAAC
s caePb3.Scfld02_0       3550974 180 +  4147112 TAGTTCGGGATAGTTCTGCATGGTTCAGAGGAAATCA-------GCTGTTAAAAGT-TGAGAGGGAGACTAAATCAAACTCTGATAAGGTTTCGCATTAtcaattttgtctg-------------aaactcttttg--ctgaaaaagtga---acatttt----tcttgCATTTGAAACGTTAAAA-TATTGTTATCATGAGTATTCTGAC
i caePb3.Scfld02_0      C 0 I 14
e caeJap4.Scaffold18194   397605 949 +   823664 I
e cb4.chrX              10620350 247 + 21540570 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=0.000000
s ce10.chrX              5262823 12 + 17718866 AAGTCCTGTGTT
e caePb3.Scfld02_0       3551154 14 +  4147112 I
e caeJap4.Scaffold18194   397605 949 +   823664 I
e cb4.chrX              10620350 247 + 21540570 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=296.000000
s ce10.chrX              5262835 9 + 17718866 TTCCTTTTC
s cb4.chrX              10620597 9 + 21540570 tcaattttc
i cb4.chrX              I 247 C 0
e caePb3.Scfld02_0       3551154 14 +  4147112 I
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=-24828.000000
s ce10.chrX              5262844 472 + 17718866  
s cb4.chrX              10620606 579 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3551168 456 +  4147112  
i caePb3.Scfld02_0      I 14 I 17
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=-217.000000
s ce10.chrX              5263316  5 + 17718866 G-----AAAT
s cb4.chrX              10621185 10 + 21540570 ATCCGAAAAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3551624 17 +  4147112 I
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeSp111.Scaffold527     14099 275 -    90967 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=-2131.000000
s ce10.chrX              5263321 37 + 17718866 ATGTTCGGTACGTT-TTTATTATTAACACTCTCGAGTT-------
s cb4.chrX              10621195 36 + 21540570 -----GTGTACCACATATAGGAT----ACCCTCTTGAAACGCGAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     14374 39 -    90967 ATATTGGGTACTAC-TGTACCATTAAACCTCTCATCAAAA-----
i caeSp111.Scaffold527  I 275 C 0
e caePb3.Scfld02_0       3551624 17 +  4147112 I
e caeJap4.Scaffold18194   397605 949 +   823664 I
e caeRem4.Crem_Contig0   2064009 237 -  4500979 I

a score=131523.000000
s ce10.chrX              5263358 744 + 17718866  
s cb4.chrX              10621231 716 + 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2064246 740 -  4500979  
i caeRem4.Crem_Contig0  I 237 C 0
s caeSp111.Scaffold527     14413 640 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3551641 643 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I

a score=-11157.000000
s ce10.chrX              5264102 39 + 17718866 ----AAACCTAGAGGATTCCCTGAGATACTAAAAG----------TTCA-AACA-------------------
s caeRem4.Crem_Contig0   2064986 62 -  4500979 ----AAACGCC-------ACATCACTTATTGAATATGAGAACTGAGTCATACTAGAGTGTTTTCTCTCAAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     15053 45 -    90967 ACACAAACACA-------CCACCAGCTAGT---------------TTCA-aacaaattgctcagt-tca----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552284 33 +  4147112 ACATATACAC------------------TT---------------TTCACAGCAAAGTTTCAAA---CA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I
e cb4.chrX              10621947 15 + 21540570 I

a score=1879.000000
s ce10.chrX              5264141  86 + 17718866 -----------------------------------------------------------------------------TTTATAAA---TTCCCTACACCCTAAGTCTCCAAAAATTAGTCACCTCAGTAATTCAAGCAACTTCTA---------------CCCTATCGGCC-CTCATTTCAA
s cb4.chrX              10621962 106 + 21540570 ------------------------------ttttca-----------------------------atttttctctcccttgagaa--------------ctaaaaaaaaagaagttggtCA--TCAGTAATTCATGCAACTTTTCTGTTCTCCCTTTTTATTCCTTTTCTC-CTCATTTCAA
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2065048  83 -  4500979 -------------------------------------------------------------------------TACTCTTAAAAAATATt--------cttaagaaaaaataaattggtcA--TCAGTAATTcatgcaacttttt---------------ttgccTCTTTT-CCCATTTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     15098 119 -    90967 agtatttctttcgaaaaccTTTTGGATGTgttctca--------------------------------tttgttttttcggaaag---tt--------CTTGAG---ACAGAAAGTGGTCA--TCAGTAATTCATGCAACTTTTCgg-------------ttc--tctctcattcatttcaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552317 141 +  4147112 CATATTGCTCCC---AACATT-----TGTGTTTACAATATTCTGCTTTATATTCCCCCGtagcatttttttgttgttgtttcaag---gt--------tttg-------aaaaattggtca--TCAGTAattcatgcaacttttctg-------------ttctttctctcattcatttcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   397605 949 +   823664 I

a score=104793.000000
s ce10.chrX              5264227 187 + 17718866 TTTTCAATTTCACTTGTC--------------GCAA---CTGACGCAAACAGTATTACTATTCAATTCTTAATTGCATTTTTC--AGAGATGTCAAAGGAAATCGACATTTCAATACGATACTTGGAAAATGTTCTTTCAACCAACAATTCCACATTGATTCTCAGTAAGTTACTATTGTTTTTTAGGTTCTGAATTTTGACAACA
s cb4.chrX              10622068 153 + 21540570 TTCTCGATTTCA--------------------CTTG---CGCCAACAAACAGTATTTCGATTc------taattgcatttttcagagaaatgtcAAAAGAGATTGACATTTCCATACGATACTTGGAGAATGTCCTTTCAACCAACAATTCCACATTGATTCTCAGTGAGTTTA-------------------ACGTCTTC-----
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2065131 163 -  4500979 TTCTCGATTTCACTCTCA------ACTTGTCGCTTA---CCCGCGCAAACAGTATTACTATTC------TAATTGCATTTC----AGAGATGTCAAAAGAAATTGACATTTCCATACGATACTTGGAGAATGTTCTTTCAACCAACAATTCCACTTTGATTCTCAGTAAGttaa-------------------aactttcg-----
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold527     15217 160 -    90967 ttctcgATTTCACTTGTC------GCTTACCTCCTCCTTCCCGCGTAAACAG------TATTC------TAATTACATTTC----AGAGATGTCAAAAGAAATCGACATTTCCATACGATACTTGGAGAATGTTCTTTCAACCAACAATTCCACATTGATTCTCAGtaagaatt-------------------gattttta-----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552458 189 +  4147112 ttctcgatttcacttctttttccaacttgTCGCTTACTCCCCGCGCAAACAGTATTACTATTC------TAATTGCATTTCAGAAAGAGATGTCAAAAGAAATTGACATTTCCATACGATACTTGGAGAATGTTCTTTCAACCAACAATTCCACATTGATTCTCAGTGAGTATCTGTTG-----------CTGGAGtttcacaata
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   398554 174 +   823664 TCTTCAATCTTGATTTTC--------------GCAG----ACGACCAAACAG------TTTTC------TGATTGGATTTCTTTTCAGAATGTCAAACGAAATTGACATTTCCATACGATACTTGGAGAATGTTCTTTCGACCAGCAATTCCACTTTAATACTgagcaagttttttttgtgtttttttttt--gagttcaaggaaa
i caeJap4.Scaffold18194 I 949 C 0

a score=-214.000000
s ce10.chrX              5264414 20 + 17718866 TCATTAAATAAGTTTA--TTAA
s caeJap4.Scaffold18194   398728 15 +   823664 ttatt-------tttaatttca
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3552647  0 +  4147112 C
e cb4.chrX              10622221  1 + 21540570 I
e caeSp111.Scaffold527     15377  0 -    90967 C
e caeRem4.Crem_Contig0   2065294 26 -  4500979 I

a score=-8616.000000
s ce10.chrX              5264434 56 + 17718866 GCTTGTAACCCTGTATTGTATTTT-----TATTTAAAAAAATC-----------AATTCGT--TTTAAAGTCAC
s cb4.chrX              10622222 26 + 21540570 ------------GCATTTTTTCTT-----AGTTTGAAAGTAAC-------------------------------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold527     15377 17 -    90967 --------------attttaattt-----tgttcaa--------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   398743 71 +   823664 ---ggtaGTACCGCAGCTGTTCTTGAAGCTATTTCTAAACATTGTGACACATCGAATGCGGAACTTaaggttat
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3552647  0 +  4147112 C
e caeRem4.Crem_Contig0   2065294 26 -  4500979 I

a score=439.000000
s ce10.chrX              5264490 64 + 17718866 ATGCTGGTTTTTTGAATG--------GGTCTTGCCACGATTTCAGTGATCGCCACACGGGCCAAAATTTGCC
s caeJap4.Scaffold18194   398814 65 +   823664 -------tttttttaatgaagtaCCAGGTTCTGCTACCAGAACGGGGAATTCAAAATTAGACAAGAATTTTC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3552647  0 +  4147112 C
e cb4.chrX              10622248  0 + 21540570 C
e caeSp111.Scaffold527     15394  0 -    90967 C
e caeRem4.Crem_Contig0   2065294 26 -  4500979 I

a score=-21442.000000
s ce10.chrX              5264554 101 + 17718866 --------------------------ATTTTTTGTTGAATTTTGTAAATTTAA----ATTAAATTTGGGGGAAGAAATAGATAT-----------------TTTCTAGAAA---GGAAAAATTCATCATAC--CTACGAAAATTATTGTTTTT--------------------------------------------
s caeSp111.Scaffold527     15394  10 -    90967 ----------------------------tttttgttg-------------------------------------------------------------------------------------------------------------------t--------------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552647  12 +  4147112 --------------------------attttttgttt-------------------------------------------------------------------------------------------------------------------t--------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   398879 196 +   823664 GCTTTTCCGGGCGACCcgggttttaaaatttttgttt-tcattgtGCTTACAAAGCTATTCACGTatgatgaaaataaaaatatagaCTTTTGTCctggaatttctgaaaattcagaaattttccGCAAACCGCTAAtaagttttttatttctctACCGATTTGATCGTGCAAGCTTTTCAAGtgtctgcaattttt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10622248   0 + 21540570 C
e caeRem4.Crem_Contig0   2065294  26 -  4500979 I

a score=14351.000000
s ce10.chrX              5264655 19 + 17718866 TTTTCAGGCAGCACAGCTG
s cb4.chrX              10622248 19 + 21540570 TTTTTAGGCAGCACTGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2065320 19 -  4500979 TTTTCAGGTAGCACTGCTG
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold527     15404 14 -    90967 -----aGGTAGCACTGCTG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552659 19 +  4147112 ttttcaggtagcACTGCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   399075 19 +   823664 ttctcaacaaaaataGCTT
i caeJap4.Scaffold18194 C 0 I 67

a score=35027.000000
s ce10.chrX              5264674 57 + 17718866 CTGTTCTTGAAGCTGTATCGAAGAATTGTGATACAACAAATGGAGAACTCAAAGTTG
s cb4.chrX              10622267 57 + 21540570 CACTTCTTGAAGctatatcgaaaaattgtgacACTACTGATATAGATCTCAAGGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2065339 57 -  4500979 CATTGCTTGAAGCTGTATCTAAGAATTGTAACACTACTGATGTAGAGCTTAAGGTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     15418 57 -    90967 CAGTCCTTGAAGCCGTATCGAAGAACTGTGACACAACAGATGTAGAACTCAAAGTAA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552678 57 +  4147112 CAGTACTTGAAGCTGTATCGAAGAATTGTGACACCACAAATGTTGACCTCAAGGTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   399094 67 +   823664 I

a score=751778.000000
s ce10.chrX              5264731 1034 + 17718866  
s cb4.chrX              10622324 1008 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2065396 1023 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     15475 1002 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3552735 1017 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   399161 1173 +   823664  
i caeJap4.Scaffold18194 I 67 I 174

a score=8460.000000
s ce10.chrX              5265765 9 + 17718866 GTGTTTTAC
s cb4.chrX              10623332 9 + 21540570 GTGTTTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2066419 9 -  4500979 GTGTTTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     16477 9 -    90967 GTGTTTTAC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3553752 9 +  4147112 GTGTTTTAC
i caePb3.Scfld02_0      C 0 I 119
e caeJap4.Scaffold18194   400334 174 +   823664 I

a score=-2098.000000
s ce10.chrX              5265774 43 + 17718866 ACGATGCAATGTGAGCCACGGGAGAGGGGGTTTG---GAGGTTGAG
s cb4.chrX              10623341 31 + 21540570 -------------AACTGGGAGAGAGAGGGTTTA--TGGGGTTAAG
i cb4.chrX              C 0 I 85
s caeRem4.Crem_Contig0   2066428 31 -  4500979 -------------A--CAAAAGAGAAACCGCTAGACGGGGGTTTGG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     16486 24 -    90967 ---------------------ACGGCACGGCTCT-CAGGGGTTAAG
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3553761 119 +  4147112 I
e caeJap4.Scaffold18194   400334 174 +   823664 I

a score=1542.000000
s ce10.chrX              5265817 53 + 17718866 CGGTTTTTAATAGCAAAGACAGAGTTTGTCATTGGAG---TGAAAGATGAAACTAA---
s caeRem4.Crem_Contig0   2066460 54 -  4500979 --GTCTTT---CGGAAAGATGGAATTTtacaattgaaatgaaaaagagtaaaCTACGGA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527     16510 53 -    90967 CGGTTTTTGTCGGGAAAAAAGGGTGTATACatccgaa---aaaatgatgaaactGA---
i caeSp111.Scaffold527  C 0 I 42
e caePb3.Scfld02_0       3553761 119 +  4147112 I
e caeJap4.Scaffold18194   400334 174 +   823664 I
e cb4.chrX              10623372 85 + 21540570 I

a score=638.000000
s ce10.chrX              5265870 14 + 17718866 ATAGCATTGTTAGT
s caeRem4.Crem_Contig0   2066514 14 -  4500979 ACATCATTGATGGT
i caeRem4.Crem_Contig0  C 0 I 37
e caePb3.Scfld02_0       3553761 119 +  4147112 I
e caeJap4.Scaffold18194   400334 174 +   823664 I
e cb4.chrX              10623372 85 + 21540570 I
e caeSp111.Scaffold527     16563 42 -    90967 I

a score=0.000000
s ce10.chrX              5265884 971 + 17718866  
e caePb3.Scfld02_0       3553761 119 +  4147112 I
e caeJap4.Scaffold18194   400334 174 +   823664 I
e cb4.chrX              10623372  85 + 21540570 I
e caeSp111.Scaffold527     16563  42 -    90967 I
e caeRem4.Crem_Contig0   2066528  37 -  4500979 I

a score=259.000000
s ce10.chrX              5266855 5 + 17718866 CAATT
s caePb3.Scfld02_0       3553880 5 +  4147112 CAAGT
i caePb3.Scfld02_0      I 119 C 0
e caeJap4.Scaffold18194   400334 174 +   823664 I
e cb4.chrX              10623372 85 + 21540570 I
e caeSp111.Scaffold527     16563 42 -    90967 I
e caeRem4.Crem_Contig0   2066528 37 -  4500979 I

a score=-431.000000
s ce10.chrX              5266860 5 + 17718866 CGATA--
s cb4.chrX              10623457 5 + 21540570 CGATA--
i cb4.chrX              I 85 C 0
s caePb3.Scfld02_0       3553885 5 +  4147112 --AGacc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   400334 174 +   823664 I
e caeSp111.Scaffold527     16563 42 -    90967 I
e caeRem4.Crem_Contig0   2066528 37 -  4500979 I

a score=-107.000000
s ce10.chrX              5266865 5 + 17718866 ---TTTCT
s cb4.chrX              10623462 5 + 21540570 ---CTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2066565 8 -  4500979 TTTCTCGT
i caeRem4.Crem_Contig0  I 37 C 0
s caePb3.Scfld02_0       3553890 6 +  4147112 --tttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   400334 174 +   823664 I
e caeSp111.Scaffold527     16563 42 -    90967 I

a score=-2920.000000
s ce10.chrX              5266870 14 + 17718866 CATAACCACATTAT
s cb4.chrX              10623467 12 + 21540570 C--AAAAATGCTAG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2066573  8 -  4500979 C------ATTTTAT
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3553896 12 +  4147112 c--gaacaatAGAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   400508 14 +   823664 CATAATCAAGAAAT
i caeJap4.Scaffold18194 I 174 C 0
e caeSp111.Scaffold527     16563 42 -    90967 I

a score=107071.000000
s ce10.chrX              5266884 138 + 17718866 TTTCAGGGTGCTGCGTTAATTGACAGAAAAGGAGAGGGCAGTTACGAAGAGAGCACATTAGTACGCAGTGCTCTTCCTCAGGATTCACAGGTGGCAACACCTCCGAGAATGCACGTTGTCGAGTATATGATGGTGAGT------------------------------------
s cb4.chrX              10623481 138 + 21540570 TTCCAGGGTACCGCATTAATTGATCGCAAAGGAGAAGGAAGTTACGAAGAAAGTACATTGGTCCGAAACGCTCTTCCACATGATTCCCAAGTGACAACACCTCCACGAATGCATGTTGTTGAGTATATGATGGTGAGT------------------------------------
i cb4.chrX              I 2 I 48
s caeRem4.Crem_Contig0   2066583 138 -  4500979 TTTCAGGGCACATCATTGATCGATCGTAAAGGTGAAGGAAGTTACGAAGAGAGCACACTGGTTCGAAATGCACTTCCTCGTGATTTTCAAGTGACAACACCTCCAAGAATGCACGTAGTGGAATACATGAAGGTGAGT------------------------------------
i caeRem4.Crem_Contig0  I 2 I 17
s caeSp111.Scaffold527     16605 138 -    90967 TTCCAGGGCGCCTCACTAGTCGGTCGAAAAGGTGAAGGTAGCTACGAAGAAAGCACATTCCTAAGGAGTGCATTACCACAGAATTCCGAAGTAGCAACTCCTCCAAGAATGCACGTTCAGGAGTATATGATGgtgagt------------------------------------
i caeSp111.Scaffold527  I 42 I 14
s caePb3.Scfld02_0       3553908 138 +  4147112 TTTCAGGGGACATCGTTGATTGACAGAAAAGGCGAAGGAAGCTATGAAGAGAACACATTAATAAGGAGTGCTCTCCCACAGAATTCCGAAGTAGCGACACCTCCAAAAATGCATGTTGTTGAATATATGATGGTGAGT------------------------------------
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194   400522 174 +   823664 ATTTAGGGCAAAACCCTCATTGATCGTAAAGGCGAAGGTAGTTATGAAGAGAGCACTCACATTCGCAGCGCACTTCCTCAAGAATCCCAGGTGGCAACTCCTCCGAGAATGCATGTGGTGGAGTACATGAAGGTGAGAATTAATGAGGCaaaaaaaCAACGCAATGTTTTCACG
i caeJap4.Scaffold18194 C 0 C 0

a score=-15894.000000
s ce10.chrX              5267022 45 + 17718866 TTTGTT----------TTTC--GAATTGTCACCGCAAGTG---------------------------TGGGAAACGATT----TTCGA
s caeRem4.Crem_Contig0   2066738 54 -  4500979 ----TTTCAGTTTCTAGTTG--AACCTTCCACCCTAAACC------TTGt--------------caataaaaaatt-------ctga-
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold527     16757 64 -    90967 TTCTTTTCAACCTTCATGTCAAcattttccacaaaaaaac-----gTTAT--------------ACGTGTGAGACTCTT----CTGA-
i caeSp111.Scaffold527  I 14 C 0
s caePb3.Scfld02_0       3554060 61 +  4147112 ATTGTT----------TGTc--cattttccatgaaaaaacagaaggtTGT--------------ACGTGTAAAACTAGCGAAACTCG-
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18194   400696 65 +   823664 TTCGTTTCA-------TGTC--CGGTTTGTATGTACATGCATGGGTTTATTGGCAATTTAGGAACGATGAAAAA--------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10623619 48 + 21540570 I

a score=18539.000000
s ce10.chrX              5267067  90 + 17718866 CGCAGCTT-TGCATAATATTGTTT----------CT---------------------------------------------------------------------------TCCC-------GTTTTTTTGTTG---TTTTC--------------ATATTC----------------------------------------------GCCTCGATGTTTTCCCATACTGAAACACGGTGCTCTTT
s cb4.chrX              10623667 101 + 21540570 CGCAGCTT-TGCATAATATTGTCTTTCTCACCTCCT---------------------------------------------------------------------------CCGC---------TGCgctattgtttttttt--------------ctacgt----------------------------------------------GTCGTTCCGTTTTCACATAGTGAAATTGTGTGCTCtct
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig0   2066792  88 -  4500979 CACAGCTT-TGCATAATATTGTCT----------CT---------------------------------------------------------------------------TCTC---------CGCGCTATTG---TTTTT--------------ATATGT----------------------------------------------GGCGCTATGTTTTCCCATACTGAAATATGGTGCTCTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     16821  80 -    90967 CAAGGCTT-TGCATAATATTGTCT----------C--------------------------------------------------------------------------------------------TCgattg---ttttg--------------atttgt----------------------------------------------gTCGTTATGTTTTTCCATACACAAATACTGTGATCTCT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3554121  82 +  4147112 TGCAGCTT-TGCATAATATTCTCT----------cc---------------------------------------------------------------------------t---------------tttattg---ttttg--------------ataCTT----------------------------------------------CTCTCTATGTTTTCACATATTGAAATATGGTGCTCtct
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold18194   400761 232 +   823664 -ACTGTTTATACATATTGTTGTTA----------CTAGAATTCTTAAAGTAACAGAACAGTTGTTAGAAAGCCCCATCTATGTACATATTCAGTAAGTTCATTCAGGGGCatctcaatttttgttttgtgatGG---TTTTTGATGACGGCTTTACATACATAATAGCGGGGTGGGTACAATGCAACACAATTGTTTTTGAAGAGATCGTTTCTATATTTTCCCATACTGAAATACAGTGATCTTT
i caeJap4.Scaffold18194 C 0 C 0

a score=-6575.000000
s ce10.chrX              5267157 33 + 17718866 TTGTTCCG-ACTTTGC--GCTGTTCATCT--CACTGTA
s cb4.chrX              10623768 34 + 21540570 caacttgaaaaatcac--tCTTCCCACCTGTAACAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2066880 34 -  4500979 TCgcttcaaaaatcac--tttataCCCCTAGTACTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     16901 25 -    90967 ---------ATACAGT--TTTGTGCATCTAGAACAA--
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   400993 33 +   823664 TTGCGACAAAATTCACAGTCTTGTTGCCGGCAA-----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3554203 32 +  4147112 I

a score=133772.000000
s ce10.chrX              5267190 256 + 17718866 TACTATTTTCA-----------CTTCAAAAGTTCTGATTATC-------AATTTTTATCCT----TTACAGATGTTTGGTGATGACAAAAAGAACAACGAAAATGAGTATCTGAAAGGTACCACCATCTCGTCCTACGTGCGTCTCAATAATAATTTAACGTAGGTTTTGAGTAATCTAGGTTGTTGAGTTTTA-----------TGATTTTT---------------------CTTCAGAACTCACGAGGAGCAGTTCAAAAAGAAGATCCAGTTTGAATTCAGTACTGCAGGTAAATTACAAAATAA----C
s cb4.chrX              10623802 258 + 21540570 TACTATTTCTC-----------TTTCtagtttccagaaattt---------cctcTATCcgttttttccagatgtttgGCGATGACAAGAAAAACAATGAGAACGAGTATCTGAAAGGTACCACCATCTCGTCCTACGTTCGTCTCAATAATAATTTAACGTGAGATTATAG--------GTTCTTGTTATACAGAACATAA---TCATTTTCG--------------------TTTCAGAACTCACGAAGAGcagttccggaaaaaaattcaatttgagtTTAGCACCGCAGGTAAGTGACGGATGAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2066914 248 -  4500979 TACTATTTCtc-----------tttcgaatttc---aaagtt-----------tctatCCG----TTACAGATGTTTGGCGATGACAAGAAGAACAACGAGAATGAGTATCTCAAAGGTACCACCATCTCGTCCTACGTCCGTCTCAATAGTAATTTAACGTGAGTTGTTGGCTA-----GCTCCTTTGATTCAAATTGAGA---T-ATCATTG--------------------TTTCAGAACTCACGAAGAACAATTCAAGAAGAAGATCCAGTTTGAGTTTAGTACAGCCGGTAAG---CATATGGG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     16926 250 -    90967 TACTATTTCTT-----------CAccgaatttt---aaattt---------ctccTATCCG----TTTCAGATGTTTGGCGATGACAAGAAGAACAACGAGAATGAGTATTTGAAAGGTACCACCATCTCGTCCTACGTCCGGCTCAATAATAACTTGACGTAGGTT--------------TTCTTCTTACTCTGCTTAGAA-TATCATctttagt------------------tttcagaactcaCGAGGAACAgttcaagaaaagaattcaatttgaattcagcacCGCAGGTAAT---TAAAAGTATCAC-
i caeSp111.Scaffold527  C 0 I 325
s caePb3.Scfld02_0       3554235 233 +  4147112 TACTATTTCCT-----------TTCCGACTAT--------------------TTCTATCCG----TTACAGATGTTTGGCGATGACAAGAAGAACAATGAGAATGAGTATCTGAAAGGTACCACCATCTCGTCCTACGTCCGTCTCAATAACAATTTGACGTAggct--------------ttctttt-----------------tcatcttcagttttttcaatttcccataATTTCAGAACTCACGAGGAgcagttcaaaaagaaaattcaattcgagTTCAGTACGGCAGGTAag---g------------
i caePb3.Scfld02_0      I 32 I 1
s caeJap4.Scaffold18194   401026 233 +   823664 TACTATTTCTCAACGGGtcgattttcagatttt---gatttttagaaCTCACTCCCACTGT----TTCCAGATGTTTGGTGACGACAAAAAGAACAACGAGAACGAGTATCTGAAAGGCACCACCATCTCGTCCTACGTTCGTCTCAACAGTAATCTCACGTAtgtt--------------ttcgttgtttttgatttaaaaaaattataataaat------------------CTTGAGAATTt-----------------aataatatttattttgatttCAGAACC-------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-55943.000000
s ce10.chrX              5267446 254 + 17718866 AAATTGAGATTGTAACATGTGCAGGGCAC--ATTTCAAAGCCATA----CAAAATAGA-TAAATAAAAAAATTTAAAGTGTTTTTGGCAAGACTTTTCATGAGATTTTAATCTTATTGTTTGTTTTCGATTGTGATATGATAAGCTTATCTTTTTTTTTGAATTACAGCTAAATTGAAATCATCAGTTTTAAATGAAAGT----------TTGTGTACA-AAAGT------ATTAAATACTAAATCTAGGTACTTGAGTGTAC--TGCAGTTTCAA------AATT
s cb4.chrX              10624060 215 + 21540570 AAATT-----------ACGTGACGGAACT---CTTAAAAAACATA--TTTAATC-------AGAAGAAAGCGTAAAGGGAATT--------ACTAGTTATAAGAATTGGAT-----------------ATCGTGACTTAAGGGGCCTCTTGATAATCTAGACTT---------------TTATTAATAGTATTCAAAAATGCTGAGATGTTGGTGTTCAGGAAGTAAGTTTATAAAATCCGGTGAAAAGTTCATTGAAACTAC--TTCTATTTGAA------AATG
i cb4.chrX              C 0 I 394
s caeRem4.Crem_Contig0   2067162  97 -  4500979 AAATCA----------ATGTAGCCGACTTCCACTTGGagaatataattttaatt-------------aaGCATTGGGG----------------AGTTATAAG-------------------------------------------------------------------------------------TTACACGAA-------------TGGTGTACATATAGT---------------------------------------------TTTGAG------GAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3554469 119 +  4147112 aaatgatgttttt---atGTAGGCGAAGA--ATTCGAAAGATAAA----CAAAC--------------AGCATCAAAAAGCTT--------TCATCTCATAGGAAT----------------------------------------------------------------------------------TTGAACGGG-------------TAGTAAGCTCTAAATTAGTTATTTG-----------------------------------TACGGG------AATG
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold18194   401259 161 +   823664 ---------------CACG---AGGAAca--attcaaaaagaaaa--ttcagtTTGAATTCAGCACGGCAGGTAAgagaatttttgt----tatttttttgaagat-----------------------------------------------------gAACAGAGGATAAAAGTATAATAGCAAT-TTCCATGAA-------------TTCTGTATA-AGAAC------------------------------GAGGGTACCGTGGGATTTGAGCTCAGCCAT-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     17176 325 -    90967 I

a score=-46277.000000
s ce10.chrX              5267700 412 + 17718866 TTATCAGTGTTGAATATTAGCGTTTTTTCTACTTTTAGTCTGAAAATAACATTGAGGAT--TAAGACACCCTGAGATTGAAAAATTCTGGGAAAAATAGGTGTGAATTTTTAAAATTTTGATACTTTCGGTAACCCAAACTCTCTGCAGTTAAAGTTATAAAGTTCTGCTGAAATTG-CCGGAGCCGAACAATTTTTTTCTATTTTCCGTAGGCAATCTCTGGGTTACGAAGCAGGTG--TGGCCTAGAGGCATGCGGTTTTTTACAAGTATTGAGCAAAAAATGAATAAATGAATTAACAAGTAAGAAAATAGGTTTTCTTACACATCTACAACTTCTATTTTTGTAATCGATTAAAAAAAAAATATTGTACTACGACCAAATTACCAAACTCTCACTGCACCCAAAAACATACAA
s caeRem4.Crem_Contig0   2067259 245 -  4500979 ----------------TTAGCA--------AGATTCAGTTTCTGAATAGC---GATGTTCct--------------tagaaaaattct--gaaataccGGCG-----TTCAAAAAGt---aggtttttatttttaaaa------tggtACCAGAACCTTAT----------AAACGA-Ctagtgaaaaaag-------tatattt-----------------------aGAACGCTTGCACTGCATTATTTCC-----TTTGTCAACAATCCCACG-----------TAGCTGT----------------ATAATTAATc--agttat-------ttcaatttttgt-atttcccAAGGA-------------------------ATCGCATTTTCC------CCAAAAAc-tgcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3554596 228 +  4147112 ----------------------------------TTGTTGTGTAAAAAGT---GAggtt--t--------------ttattatatttt--gaaaaattagtg---------gaaatt---atcttttttgtt------------tggtgtTGGATTTATGA----------AAATTA-TCAGGAAAG----------------TT-----------------------GAAACAAATG--CCGACTTAATGCA-----TTTTTTACAACTTCTTAT-----------TATCTGTTCT------------CATAGATTCTCCGAgtcat-------ttttgtgatttc-atcTTTTAAGAA-----CATTCT-------CACaactatcattttttct---------gtaat-tgcAA
i caePb3.Scfld02_0      I 8 I 3
s caeJap4.Scaffold18194   401420 203 +   823664 -------------TTAATAtcatttaattttatttttttcaccaattcaC-------AT--T--------------TCGCGATGCTCC--GATTTTGTTGTG----GTGGAGAAAGT---AGGT--------------------TG-----AAAACGATAA----------AGTTCAcccagaaaagaaaa-------------------------------------aaaacacact--ttG----AAAACA-----CTTCT--GCAATCACAAG-----------TAAGAAAAGT------------CATAATTCAGCCCatattg-------tttcttttcttt-gtcG--------------------------CCGTCTTACCGC---------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10624275 394 + 21540570 I
e caeSp111.Scaffold527     17176 325 -    90967 I

a score=-7209.000000
s ce10.chrX              5268112  85 + 17718866 ACTACCTTTTGCAAAACGTCGCAAAA---------------------------TTT---GACAGTTAA-ATTTTTATGCA----CCATATTGC----AAACGCAAGTGTCCTCTATCAAAAGAA
s cb4.chrX              10624669 114 + 21540570 AGTAatttttgca----tttgcgaaatttgcaaaattcagtttttatttctttttt---gacagttaacatttttATGCAGAATCCATATTGCCGAAAAACGTACG---GTCGTATAAAATAAA
i cb4.chrX              I 394 I 6
s caeRem4.Crem_Contig0   2067504  71 -  4500979 ---------------------------------------gttttttttagtttccc---AGTAGCCAA-AGTTTTATGCG----CCATATTGTC---AAACGCACT---GTCATATaaaagaaa
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3554827  69 +  4147112 ----------------------------------------------TTTGCTTTTCGGAGGTAGTTAA-AATTTTATGCA----CCATATTGCA---ATACATACG-GTGTTatatgaatgaga
i caePb3.Scfld02_0      I 3 I 9
s caeJap4.Scaffold18194   401623  66 +   823664 ----------------------------------------------TTTAATACGT---TGCATTCCC-ATCTTGATCct----aaaaattaga---aatggTAATCAAATCTAATCAAAAAA-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     17176 325 -    90967 I

a score=250229.000000
s ce10.chrX              5268197 421 + 17718866  
s cb4.chrX              10624789 469 + 21540570  
i cb4.chrX              I 6 I 12
s caeRem4.Crem_Contig0   2067584 426 -  4500979  
i caeRem4.Crem_Contig0  I 9 I 10
s caeSp111.Scaffold527     17501 419 -    90967  
i caeSp111.Scaffold527  I 325 I 10
s caePb3.Scfld02_0       3554905 440 +  4147112  
i caePb3.Scfld02_0      I 9 I 23
s caeJap4.Scaffold18194   401689 375 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-6600.000000
s ce10.chrX              5268618 22 + 17718866 ---CAAAATATTTTT-----ATATCTAACA--
s cb4.chrX              10625270 18 + 21540570 ---ctagagattttt---taaaat--------
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2068020 13 -  4500979 ---TTGGATATTCCC--------T--------
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold527     17930 27 -    90967 ---ATAAGtgttctgttttcaaatctAACA--
i caeSp111.Scaffold527  I 10 C 0
s caeJap4.Scaffold18194   402064 28 +   823664 TGAGTGAGTGTTCAT----CACTTCTCAGACA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555345 23 +  4147112 I

a score=97313.000000
s ce10.chrX              5268640 237 + 17718866 TTTCATAAATCT------------------------TGAATATGAAATTCTGTTGTACAATTTCTATTAAGATAAAGTTCAGGAGTTT---AAGAAGTAGGGGTAT-----TTGTTTTG-----------TTTTTCAATACGTATATATTTTGATTCTATTTTCAGGAACATCATCGACTACAATCGACTTGGATAATTTGTCTGATTTGCTTAATCAGACAGACTTTAACTGCCTAAGACCGCCAAATAAATTTTTG---GAAGATACACCGCTGGTAAGTT
s cb4.chrX              10625288 230 + 21540570 tcccataaatga------------------------aaaaagtaaaattttgttGTATTGTTACTATCAGAATCAAACTTCGAAGTGTTTCGCAGGgtacattcaa-----atttttataa---------attgtcttaa---------tttc---caaattctaGGAACTTCATCAACAACTATCGACCTTGATAATCTGTCTGATTTGCTGAATCAGACAGATTTCAATTGCCTCCGACCTCCAAACAAATTCCTG---GAAGATACACCACATGTAAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2068033 239 -  4500979 TCTGATAACAAG------------------------AACTGATGAAATTTTATTGTACTATAACAATCCGAATAAAACTTCGAAGTGT---GAAAGCTGgtattat-----ttgtttttaaattcatCCTATTTccttaa---------ttta---tttttttcagggaCCTCTTCAACTACTATCGATCTTGATAATCTGTCTGATTTGTTAAATCAGACAGACTTCAACTGTCTCCGACCACCAAACAAATTCTTGGAAGAAGACACCCCACGTGTAAGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     17957 208 -    90967 --------------------------------------TTCATGAAATTCTGTTGTATAATA------AGAATAAAACTAAGAAGCAG---AACATTTGgta-tat-----ttatttct-----------ttttctgagaca------cttta--tttttttacagGAACATCGTCAACTACTATAGACCTTGATAATCTGTCTGATTTACTAAATCAGACAGACTTCAACTGTCTCCGACCACCTAACAAATTTCTG---GAAGACACACCACGGGTCGGTT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3555368 223 +  4147112 tttgataactAG------------------------TGATCATGAAATTCTGTTGCACTATA------CGTATCAAGCTCAGAAGCAA---AAGATCTGGTACTATAAGCATTGTACTT-----------ATTACAATAACG------GTTTA-------TTATAGGAACATCATCGACTACTATCGATCTTGATAATCTGTCTGATTTGCTCAATCAGACAGACTTTAATTGCCTTCGTCCACCAGCCAAATATTTG---GAGGACACTCCACGGGTAAGCT
i caePb3.Scfld02_0      I 23 I 31
s caeJap4.Scaffold18194   402092 233 +   823664 TTTTATAAACTGGCCgccaaaaatattggaaaaatattgTTATGATGTTTTGTTGTACCATC------AAAATAAGACTGAAAAGTGC---Gcaattt-------------ctatattt-----------ttttttccaatg-------ttaA-----ACTTTCAGGAACATCTTCAACAACTATCGATCTTGATAATCTTTTTGATTTGCTCAACCAGACAGATTTCAATTCCCTCCGACCTCCAACAAAGTTCCTC---GAAGACACTCCTGTGGTACG--
i caeJap4.Scaffold18194 C 0 C 0

a score=-10417.000000
s ce10.chrX              5268877 41 + 17718866 CCAAGTATTACCCGGGATTTTTGCATGAAAAAAAACACTGA-----
s cb4.chrX              10625518 33 + 21540570 TGAAATAGGCTTGTGAAATTATTT--------ATGCTGTGA-----
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2068272 32 -  4500979 CTAGTCAGA--TATAATGTTTTTTA-------AAGTAGTGT-----
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527     18165 30 -    90967 -----------AATCACTTTTCTCAGTAATGCATAGTATGA-----
i caeSp111.Scaffold527  C 0 I 2
s caeJap4.Scaffold18194   402325 38 +   823664 --AACCAttatttttatacttttcaa------aaaatttgcacTTT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555591 31 +  4147112 I

a score=112105.000000
s ce10.chrX              5268918 144 + 17718866 -TTCAGATTGTCGAGCA---ACCAAAAGCTATTGACTGGCAGAGAGAACCTACAAGTGCACCGCCGGAGAAAGATTTGCTCTTGGAGCATGACGGTGTAGATTATGTCATTTTTCGAGAAAAAGAAGGAAAAGTATTAGAAGTGAGTT
s cb4.chrX              10625553 147 + 21540570 -TTCAGATAGTTGAGCTCCCACCAAAAGCTATCGACTGGCAGAGAGAACTATCTAGTGTCCCTTCAGAGAAGGATCTGCTTTTAGAACACGACGCCGTAGATTATGTTATATTTCGAGAAAAGGAGGGAAAGGTTTTAGAAGTGAGTT
i cb4.chrX              I 2 I 194
s caeRem4.Crem_Contig0   2068306 139 -  4500979 -TTTAGATTGTTGAGCT---ACCAAAGGCAATCGACTGGCAAAGAGAACCAACTAGTGTCCCACCGCAGAAAGATTTATTATTGGAGCATGATGCCGTAGACTATgttatttttcgagaaaaggaaggaaaagtTTTAGAGGT-----
i caeRem4.Crem_Contig0  I 2 I 12
s caeSp111.Scaffold527     18197 139 -    90967 -TATAGATCGTTGAACT---CCCAAAAGCAATCGACTGGCAAAGAGAACCAACAGGTGTCCCTGCAGAAAAAGATTTGCTTCTGGAGCCAGACGCATTGGATTACGTTATATTCcgtgaaaaagaaggaaaagtgtTAGAAGT-----
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3555622 144 +  4147112 -TTTAGATTGTTGAACT---TCCGAAAGCTATCGACTGGCAACGAGAGTCTACTACTACCCCTCAGGAAAAAGATCTGCTCTTGGAGCAAGACGCTGCAGAATATgttatttttcgagaaaaagaaggaaaagtgtTAGAAGTTagtt
i caePb3.Scfld02_0      I 31 I 6
s caeJap4.Scaffold18194   402363 139 +   823664 TTAAAGATATCTGAACC---ACCAAAAGCAATCGATTGGCAAAGAGAA------AGTGCCCCGTACGGAAAAGATTTGTTAATTGAACACGATGCCTCGGAGTAtgtaatttttcgagaaaaaggaGGAAACGTTTTAGAAGTAAGTC
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5269062 62 + 17718866 CGCATTTTTTGTTTGGACACCTGATATATCATAGTAAAACTTTTTGATGCTTTTTTATTGAG
e caePb3.Scfld02_0       3555766  6 +  4147112 I
e caeJap4.Scaffold18194   402502  0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18336  0 -    90967 C
e caeRem4.Crem_Contig0   2068445 12 -  4500979 I

a score=-1269.000000
s ce10.chrX              5269124 31 + 17718866 GGAGCAATTACTGATTTTTCCCACTTTTTTA
s caeSp111.Scaffold527     18336 18 -    90967 -------------Atgtttttcgtgttttta
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   402502  1 +   823664 ------------------------------A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555766  6 +  4147112 I
e cb4.chrX              10625700 194 + 21540570 I
e caeRem4.Crem_Contig0   2068445 12 -  4500979 I

a score=568.000000
s ce10.chrX              5269155 13 + 17718866 AAAATAACTATCG
s caeJap4.Scaffold18194   402503 13 +   823664 AATTTATCTATCG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555766  6 +  4147112 I
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18354  0 -    90967 C
e caeRem4.Crem_Contig0   2068445 12 -  4500979 I

a score=0.000000
s ce10.chrX              5269168 68 + 17718866 CACTGTCGTATGTTCGTATCCCTACAATGTTTGAATATTTACAACAAGTAGACCATAAAATTCAAAGG
e caePb3.Scfld02_0       3555766  6 +  4147112 I
e caeJap4.Scaffold18194   402516  0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18354  0 -    90967 C
e caeRem4.Crem_Contig0   2068445 12 -  4500979 I

a score=127.000000
s ce10.chrX              5269236 6 + 17718866 AAATGT
s caePb3.Scfld02_0       3555772 6 +  4147112 aatttt
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18194   402516 0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18354 0 -    90967 C
e caeRem4.Crem_Contig0   2068445 12 -  4500979 I

a score=784.000000
s ce10.chrX              5269242 11 + 17718866 TTTGATCGATA
s caeRem4.Crem_Contig0   2068457 11 -  4500979 TCTGATAAGAA
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0       3555778 11 +  4147112 tttcatcgatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   402516  0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18354  0 -    90967 C

a score=-322.000000
s ce10.chrX              5269253 34 + 17718866 ATTTCAAAAAAGAGTAATTAAGTATGCAATTACT
s caeRem4.Crem_Contig0   2068468  9 -  4500979 ATT-------------------------ATTACT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3555789  0 +  4147112 C
e caeJap4.Scaffold18194   402516  0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I
e caeSp111.Scaffold527     18354  0 -    90967 C

a score=-336.000000
s ce10.chrX              5269287 7 + 17718866 -TTTTGAA
s caeRem4.Crem_Contig0   2068477 4 -  4500979 GTTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     18354 7 -    90967 -tttttat
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3555789 0 +  4147112 C
e caeJap4.Scaffold18194   402516 0 +   823664 C
e cb4.chrX              10625700 194 + 21540570 I

a score=273.000000
s ce10.chrX              5269294 1 + 17718866 A
s caeSp111.Scaffold527     18361 1 -    90967 a
i caeSp111.Scaffold527  C 0 I 3
s caeJap4.Scaffold18194   402516 1 +   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555789 0 +  4147112 C
e cb4.chrX              10625700 194 + 21540570 I
e caeRem4.Crem_Contig0   2068481 0 -  4500979 C

a score=-13161.000000
s ce10.chrX              5269295 63 + 17718866 CAAAATAACATTTTTAAGTATTATTTTAAAAGTTTAGCTATGGCATTTGACCCTTTCCGCACT
s cb4.chrX              10625894 48 + 21540570 caaaatatca---------------ggaaaactttttttttggtgtctggcctcctttaaggc
i cb4.chrX              I 194 I 1
s caeRem4.Crem_Contig0   2068481 15 -  4500979 ---------------------------------------TCATTGTCCAACTTA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     18365 10 -    90967 CATGATATCA-----------------------------------------------------
i caeSp111.Scaffold527  I 3 C 0
s caeJap4.Scaffold18194   402517 18 +   823664 --------------------------------------CGAAACCTTTAACCGTTT-------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3555789  0 +  4147112 C

a score=408031.000000
s ce10.chrX              5269358 551 + 17718866  
s cb4.chrX              10625943 566 + 21540570  
i cb4.chrX              I 1 I 4
s caeRem4.Crem_Contig0   2068496 548 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold527     18375 507 -    90967  
i caeSp111.Scaffold527  C 0 I 4
s caePb3.Scfld02_0       3555789 537 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   402535 529 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9234.000000
s ce10.chrX              5269909 42 + 17718866 AGTTCAAGCTGACAGAAA--------AACGTTATACA-----TTACTTTCTTATA
s cb4.chrX              10626513 19 + 21540570 -------------------------------aattta-----aaaccTCCGAAAA
i cb4.chrX              I 4 I 10
s caeSp111.Scaffold527     18886 22 -    90967 ----------------------------agttttaat-----tAACTCCTCAAAA
i caeSp111.Scaffold527  I 4 I 6
s caePb3.Scfld02_0       3556327 22 +  4147112 ----------------------------AGCTATCCA-----gaactttggaaaa
i caePb3.Scfld02_0      I 1 I 17
s caeJap4.Scaffold18194   403064 45 +   823664 ------aataaataaaaaataaaaagaaagtaataaaCCAATTAACTTCTC----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2069044 36 -  4500979 I

a score=416769.000000
s ce10.chrX              5269951 590 + 17718866  
s cb4.chrX              10626542 610 + 21540570  
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2069080 612 -  4500979  
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold527     18914 558 -    90967  
i caeSp111.Scaffold527  I 6 I 59
s caePb3.Scfld02_0       3556366 567 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194   403109 629 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1294.000000
s ce10.chrX              5270541 1 + 17718866 -T
s cb4.chrX              10627152 1 + 21540570 -T
i cb4.chrX              C 0 I 98
s caeRem4.Crem_Contig0   2069692 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3556933 1 +  4147112 -T
i caePb3.Scfld02_0      C 0 I 173
s caeJap4.Scaffold18194   403738 1 +   823664 A-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     19472 59 -    90967 I

a score=329.000000
s ce10.chrX              5270542 2 + 17718866 CA
s caeRem4.Crem_Contig0   2069693 2 -  4500979 CG
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   403739 2 +   823664 CA
i caeJap4.Scaffold18194 C 0 I 925
e caePb3.Scfld02_0       3556934 173 +  4147112 I
e cb4.chrX              10627153 98 + 21540570 I
e caeSp111.Scaffold527     19472 59 -    90967 I

a score=291.000000
s ce10.chrX              5270544 66 + 17718866 AATGAATGTAAAGCGCAGGCACTGATTGCTCACTTTTGAAAATTTTAATTTAATTCGACGAAAACC
s caeRem4.Crem_Contig0   2069695 62 -  4500979 AATAGTCACGAAAC-CAATCCCTGAT--ATTAC-CTGGGATACTTGAAACtcattctttgaaaatc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3556934 173 +  4147112 I
e caeJap4.Scaffold18194   403741 925 +   823664 I
e cb4.chrX              10627153 98 + 21540570 I
e caeSp111.Scaffold527     19472 59 -    90967 I

a score=0.000000
s ce10.chrX              5270610 508 + 17718866 ACAAAAATCAAGTTGTTTCTTCGGACATTGGCATTTATTTAATTATTTCCTTTTTTTAATATATTTCGCAACAAGTGCAAAACTTGAAGCTGTTAAGCCAGACATCGGTAACTTTTCACTGACTTTGGAAACTTTGAAACTAAATTCAACCTCCCACACTCTTGTTGCCAACTGTAACAACTTTCCAAAAAACTTTAGACGGTAGAAACTTCTTTGCCAACTTTAGCTACTTGTCTATTAACTTTTCCAATATTCCAGCTAACTTCAGTACATTTTCAAAGAAATTTAAAATTTTAACTTTAGAATAACTTTAGAAATTTTCTAACTAAACCAGTTTTAGAAAACTAGTTTCAGCATCTTTCCAGCCAACTTTAGCAATTTCTTACCCTAAGTTAGCCCTCCAAACAGCGGTTTTCTAATTGAAAAAATTATAGAGCCTATATATATATATGAGTTAGCAAAAAAATCCCTGAATCTTCTAACTTTTGTACCTGGCTTACCACGCAAC
e caePb3.Scfld02_0       3556934 173 +  4147112 I
e caeJap4.Scaffold18194   403741 925 +   823664 I
e cb4.chrX              10627153  98 + 21540570 I
e caeSp111.Scaffold527     19472  59 -    90967 I
e caeRem4.Crem_Contig0   2069757   0 -  4500979 C

a score=782.000000
s ce10.chrX              5271118 24 + 17718866 TGTTTAATTCGGTGTTTCATAA----GT
s caeSp111.Scaffold527     19531 28 -    90967 tgttcaattccATATTTCACAAAACTGA
i caeSp111.Scaffold527  I 59 C 0
e caePb3.Scfld02_0       3556934 173 +  4147112 I
e caeJap4.Scaffold18194   403741 925 +   823664 I
e cb4.chrX              10627153 98 + 21540570 I
e caeRem4.Crem_Contig0   2069757  0 -  4500979 C

a score=273.000000
s ce10.chrX              5271142 1 + 17718866 A
s caeRem4.Crem_Contig0   2069757 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     19559 1 -    90967 A
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3556934 173 +  4147112 I
e caeJap4.Scaffold18194   403741 925 +   823664 I
e cb4.chrX              10627153 98 + 21540570 I

a score=5172.000000
s ce10.chrX              5271143 60 + 17718866 -ATGACCCTGTGGCGC--GCGCGCGTAGTCAATGATGATGA-----------ATGTCACTTGCGCCGCCGTCGT
s caeRem4.Crem_Contig0   2069758 65 -  4500979 attgacCCTG-GCCGC----ATGCGTAGTGAATTATGATGATTTCAATGTGAATGTCAC----ACTTCGAAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     19560 68 -    90967 -TCGACCCTGAGCGGCTATAAGGTGAAGTGAATTATAATGATTTCAATGTGTATCCGACTT--GCGTCCA---T
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3557107 61 +  4147112 -ATGACCCTGACGCGC---------AAGTGAATTATGATGATTCCCATGTGTCTGTCACTTGCGCGTCCA---T
i caePb3.Scfld02_0      I 173 C 0
e caeJap4.Scaffold18194   403741 925 +   823664 I
e cb4.chrX              10627153 98 + 21540570 I

a score=3808.000000
s ce10.chrX              5271203 6 + 17718866 GTCAAA
s caeRem4.Crem_Contig0   2069823 6 -  4500979 GTCAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     19628 6 -    90967 GTCAGA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3557168 6 +  4147112 GTCAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   404666 6 +   823664 GCCAAA
i caeJap4.Scaffold18194 I 925 C 0
e cb4.chrX              10627153 98 + 21540570 I

a score=365963.000000
s ce10.chrX              5271209 403 + 17718866 AACCCTCAATTTGCAGCGGCATTATCCTCCAAGACTTGACATTTGTTCACGCCGGCAACCCAGACACTATTCCATCCGACCGATGCCACGGCGCCAAGAACATGATCAACTTCCTGAAACGGTGGAACCAGTTTGCCATTCTTGACAGCATCCGCAAATTGAAGAAATGGTAAGA-----------------GAGGTCGTTATTGTGACTAGGACACACTAGGCGACTCCACTTATTCATCATTC-AATAACCCACTAGATAATCTCAATCTAAAT----CATTCAGGAATTATGACATAAAGAAGAACGACATCGTAGTGCAGTATTTTAATGGCTTTAAAGACTGTATCGATGAGGAGCGCACTTGGCAACTTTCTCATCAAATTAAGCCGTCAAACCGAAAGTCCAAAACAC-----------AGGCATAATA
s cb4.chrX              10627251 399 + 21540570 AACCCTGTAATTACAGCGGTATCATCCTGCAAGACTTGACATTCGTCCACGCCGGTAACCCAGACACAATTCCAACCGACCGATGCCACGGCGCCAAGAACATGATTAACTTCCTGAAGCGCTGGAACCAGTTTGCCATTCTTGACAGCATCCGCAAATTGAAGAAATGGTAAGA---------ATAGGAAGAAGGTCGTTGACTTG---AGTACTCTT------TTTCCACTTACTCGTCATTC--AAAACCGATCACAT------AAACTGAATGGTGTTTTTAGGAATTATGAcatcaagaaaaatgacattGTCGTGCAGTACTTCAATGGCTTCAAAGATCGCGTTGATGAGGAGCGCACCTGGCAACTATCTCATCAGATCAAACCGTCGAATCGCAAATCCAAAATGC-----------AGTCATAATA
i cb4.chrX              I 98 C 0
s caeRem4.Crem_Contig0   2069829 403 -  4500979 AACCCTCAATTTGCAGCGGAATTATCCTTCAAGACTTGACGTTCGTTCACGCCGGTAACCCAGACACGATTCCCACCGACCGATGCAACGGCGCCAAGAACATGATCAACTTCCTGAAACGTTGGAACCAGTTTGCCATTCTTGACAGCATCCGCAAACTAAAGAAAtggtaagaaaaaaaaagaaaggaaagaggTCGTTGACTTG---AGTACTC--------ACTCCACTTACTCGTCATTC-AAAAACCGATCACAT------AAACTGAAT----CATTCAGGAATTATGACATCAAAAAGAACGACATCATAGTGCAGTACTTCAATGGCTTCAAAGACTGCGTCGACGAGGAACGTACCTGGCAACTATCTCATCAAATCAAGCCGTCCAACCGAAAACCCAAAACAC-----------AGTCATAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     19634 398 -    90967 AACCATTCATTTGCAGCGGCATCATCCTCCAAGACTTGACATTCGTTCACGCTGGCAACCCAGACACGATTCCAATCGACCGTTGCAACGGCGCCAAAAACATGATCAACTTCCTGAAACGGTGGAACCAGTTTGCCATTCTTGACAGCATCCgcaaattgaagaaatggtAAGCGAA------AGGGAGAAGAGGTCGTTGACGTTG--AGTAGACAC------ACTTACTCCACTCATCATTC---ATACCGATCACAT------AAACTAAAT----CATTCAGGAATTATGACATAAAGAAGAATGACATCGTAGTGCAGTACTTCAATGGCTTCAAGGATTGCATCGATGAGGAGCGTACCTGGCAACTATCTCATCAAATCAAACCATCTAATCGCAAATCCAAAACAC-----------AGACATAATA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3557174 390 +  4147112 AACCCTCAGTTTGCAGCGGCATCATCCTCCAAGATTTGACATTTGTTCACGCCGGCAACCCAGACACAATTCCAAGCGACCGATGCAACGGCGCCAAAAACATGATCAACTTCCTGAAACGATGGAACCAGTTTGCCATTCTTGACAGCATCCgcaaattgaagaaatggt-------------------AAGAGGTCGTTGACTTGAGTAGTAGACAC------ACTCCACTCATtcgtcattcaaaaaaacgaTCACAT------AAACTAAAT----CATTCAGGAATTATGACATAAAGAAGAACGACATCGTAGTCCAGTACTTTAATGGTTTCAAAGATCGCGTCGATGAAGAACGTACCTGGCAACTCTCTCACCAAATCAAGCCATCCAATAGAAAATCCAAAACAT-----------AGTCATAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   404672 386 +   823664 ACCCCGCAATTTTCAGTGGCATAATTCTGCAAGACTTGACATTCGTACACGCCGGCAACCCAGACGCAATTCCATCCGATCGCTGCCACGGCGCCAAGAACATGATCAACTTCCTGAAGCGGTGGAACCAGTTTGCGATCCTTGACAGCATTCGCAAATTGAAGAAATGGTAAGT-----------------GAGGTCGTTGCA------AGAACAATG------CCTCAATGTA-----------GACAGACAGTCAATT------GGCATAAAC----TATTCAGGAATTATGACATCAAAAAGAACGACATTGTAATTCAATTCTTCAATGGCTTCAAAGACCGTGTCGATGAAGAGCGTACGTGGCAGTTGTCTCACCAAATCAAGCCGTCAAATCGCAAATCTAAAGCACAATGAAATCAGAGACAtaata
i caeJap4.Scaffold18194 C 0 I 102

a score=-3565.000000
s ce10.chrX              5271612 63 + 17718866 TACAATCCA------CAATTCACAGCCCCTGTCATTATTTCTC------AGATTTCTTTTCTCACTTTCTTTTTT
s cb4.chrX              10627650 62 + 21540570 GAT--TTCAGCA---TAATTTACATTAtttttccgaactttct--------cttctccgtctgactctctttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2070232 59 -  4500979 Att--ttctgt-----------cattatttttctttactttctttc---cactttcttctctggctctctccttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     20032 69 -    90967 AAT--TCCAGTCATTTAATTTCCAagttcattctctctctttcttt---aactttctcttctacattctccatt-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3557564 62 +  4147112 AA-------------TAActttcactcttttattctcctttcctttccaaattttttcttttcatttctctcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   405058 102 +   823664 I

a score=-71983.000000
s ce10.chrX              5271675 182 + 17718866 CAT--TCAGCTCTCTCGTTCTCTCTTTC--------TCT--ACATTTTTCCGACAGTataat--aatattgacaa------tgataataacaat-aataTAAAACATGTTTATATTTTCATCTACTCAAAATTTAGTGGGCACA-CAATGAATATACAAA-------------------------------------------------------------------AAAA-------------------GATAA-AAAGA------AG---------------AAAGAAAG--------------------------------------ATGCACAAAAGTGACA------CTTC
s cb4.chrX              10627712 219 + 21540570 cc-------gtctctcgtctccatttccagaaaaaaaca--ctcTCTTC-------------------CAAATGa------tgataataataat-aata-aacaCAGTCACACAGTTTCA-------AATACTT------TATA-CCAGATGGATGAAAA-------------------------------------------------------------------AGGACATTTCCGAATGCTTACCGGAGAG-AAAGTGACTTCAGGGGT---------GGAAAAGAAGATTTTCGTTGTCTGTACTTGGCTAAGCAATTACAATCcacataaactga---aa------ttt-
i cb4.chrX              C 0 I 93
s caeRem4.Crem_Contig0   2070291 155 -  4500979 ct-------ctctttctctttctttctc-------accc--atctcttctt-----ttcttc--aaaactaataa------taatgataataat-aata-taaaCAGTCATACAGTTTCA-------TA---TT------TATATCCATATAGTTTAAAC-------------------------------------------------------------------AATA-------------------GGAAG-AAAGC--------------------------AGAAGACGT----------------------------------ACAAAAAATAGGACAA------TTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     20101 131 -    90967 --------------tcaattcctgtctt--------ctt--ctcttttt---------------------------------aataataataat-aata-aagaaTCTACTACAG------------AAAGTTT------TATA-ACCGAGTCATAAAGA-------------------------------------------------------------------CATA-------------------AATAGTAGAGC------AGGGAT---------GTACAATAAG----------------------------------------GAAGGAAGGGAACA------CTTC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3557626 142 +  4147112 cc-------gtcactcaatttctttttc--------tctaactcccttt---------------------------------aataataataatgaact-gaactttttctacaa------------aatgttt------tata-ccaaaaacataaa----------------------------------------------------------------------ata-------------------aata--aaaga------agcggt---------g-aaaataag---------------------------------------cggaatatagaaacatagaatTTTT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   405160 261 +   823664 --tgttttattttctttgtttctttttc--------tga--atatttatCATACAATGCgttgaaaaattgggaaattatTTAAGAAGAGCATt-caaa-tatatatatatatattattGC------AAAATTA------TCCA-CcggaattttggaaattttgactTAAATTGTGTAAATCTGATGATAGGAAAGAATGAAAGGGACGGGAGCAACAACTGAAGGAAAA-------------------GAAATTAAAGG------AATGATTCGATGACGGTGAAAGAAA--------------------------------CACATTCTAAAATTGAAGAGC-----------
i caeJap4.Scaffold18194 I 102 C 0

a score=-12692.000000
s ce10.chrX              5271857  74 + 17718866 --AATATGCATACCGGAT------GGGATGACT-----------------TTT-----------TCGTTG--------------AATTGTGGAACAAAAGAAAAT------------AATTTTAAACTGGGT---TTGG
s caeRem4.Crem_Contig0   2070446  80 -  4500979 --AGAATGCTTACCGGAG------GGGATGACTTCAG-GAAACATGAC-TTTT-----------TCGTTG---------------GTTCt-agaaatggaaaact-------------------aaATTCGT---TTGG
i caeRem4.Crem_Contig0  C 0 I 20
s caeSp111.Scaffold527     20232 108 -    90967 ---AAATGCAGACCGGGT------GTGATGACTGCATCGAGCCACGACGTTTT-----------TCGTTGGTATTAAGGAAGACACTTCTTAGACgttgaaaatt-----------aaaacttaGAAATAATAGATTGA
i caeSp111.Scaffold527  C 0 I 55
s caePb3.Scfld02_0       3557770  96 +  4147112 --AAAACGCATACCGGAA------GGGTTGAATTAA--GAAACATGAc--ttt-----------tcgttg----------aaaaagttct----cgttgaaaatttagagagg---aaaactgaaacataAT---TATA
i caePb3.Scfld02_0      I 2 I 24
s caeJap4.Scaffold18194   405421 121 +   823664 ACTACACAAGAACCGAGTTTTGCAAAAATGATTAGGCAAAAATATTAG--TTCACAATTTAAAATCGTTG-----TAAAGAGAAATATGT----AATGGAAAGGTTAtcatgattttgaattcaggCATAAA-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10627931  93 + 21540570 I

a score=32764.000000
s ce10.chrX              5271931 719 + 17718866  
s cb4.chrX              10628024 754 + 21540570  
i cb4.chrX              I 93 C 0
s caeRem4.Crem_Contig0   2070546 917 -  4500979  
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold527     20395 744 -    90967  
i caeSp111.Scaffold527  I 55 I 1
s caePb3.Scfld02_0       3557890 882 +  4147112  
i caePb3.Scfld02_0      I 24 I 1
s caeJap4.Scaffold18194   405542 746 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1900.000000
s ce10.chrX              5272650 13 + 17718866 TTATGGGG----GATGA
s caeRem4.Crem_Contig0   2071463  8 -  4500979 TTTTAGGG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     21140 12 -    90967 TTTCGGGGGTAA-----
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3558773  8 +  4147112 TTTTGGgg---------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   406288  6 +   823664 TTCTAA-----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10628778  0 + 21540570 C

a score=-16142.000000
s ce10.chrX              5272663 118 + 17718866 AGCTTTGTTCCGAATATTCTTTTCAGTCTTAAACGTTGAGTATCGTCGGTGGAGATTCAGTTTAGAAATACTTTCAACATTCCAAAATGTTTCAAATTTCTCGAAAATTTCAGTCATT
s caeRem4.Crem_Contig0   2071471  20 -  4500979 --------------------------------AGGTTAAGCAACAT--------------------------------------------GTTAAA----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3558781  27 +  4147112 -------------------------gt----attttcaaatttcat---------------------------------------------ttaaaTT-------AAT----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   406294  27 +   823664 ----------CAGTTATATTTTTCCAT-----ACCACAAGTT----------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10628778   0 + 21540570 C
e caeSp111.Scaffold527     21152   0 -    90967 C

a score=0.000000
s ce10.chrX              5272781 3 + 17718866 TGG
e caePb3.Scfld02_0       3558808 0 +  4147112 C
e caeJap4.Scaffold18194   406321 0 +   823664 C
e cb4.chrX              10628778 0 + 21540570 C
e caeSp111.Scaffold527     21152 0 -    90967 C
e caeRem4.Crem_Contig0   2071491 0 -  4500979 C

a score=-6301.000000
s ce10.chrX              5272784 60 + 17718866 CCGATTTTACAAAAATATGATTCCTCTTTTTGAAAGAACATAAAAAGTTTCGACAATTTT
s cb4.chrX              10628778 15 + 21540570 ctgatttttcaaaag---------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2071491  4 -  4500979 ---------TAAA-----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   406321  5 +   823664 -------CATAA------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3558808  0 +  4147112 C
e caeSp111.Scaffold527     21152  0 -    90967 C

a score=-12858.000000
s ce10.chrX              5272844 65 + 17718866 TTGAAACTTTTTGCTCAGTGTTTTTTATGACTTTAGCAACTCTACTGACGATACTCCACTTTTAA
s cb4.chrX              10628793 18 + 21540570 --ggTACGTCT---------------------------AAACTAT------------------AA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2071495  6 -  4500979 -----ACTTCT------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     21152 23 -    90967 TTGAAACTTGA---------------------------GTTCTAT---------------TTGAA
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   406326  3 +   823664 --------------------------------------------------------------CAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3558808  0 +  4147112 C

a score=46813.000000
s ce10.chrX              5272909 48 + 17718866 CTTACAGGTGGTGGTGGACGATTTGGACGATGCTCAGTATGACTTCTG
s cb4.chrX              10628813 46 + 21540570 --TACCGGTGGTGGTGGCCTATTTGGGCGGTGCTCCGTATTGCTTCTG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2071501 46 -  4500979 --TACTGGTGGTGGTGGACGATTTGGACGGTGCTCAGTGTTACTTCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     21175 48 -    90967 CTTACGGGTGGTGGTGGACGGCTTGGACGATGCTCAGTTTGACTTCTG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3558808 48 +  4147112 CTTACCGGTGGTGGTGGACGATTTGGACGGTGTTCAGTCTGACTTCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   406329 48 +   823664 CTTACCGGCGGTGGCGGACGGTTTGGGCGGCGCTCCGTAGAGCTTCTA
i caeJap4.Scaffold18194 C 0 I 30

a score=8091.000000
s ce10.chrX              5272957 30 + 17718866 GTTAACGAGCCACCATTGAACGGCGAA---GGA
s cb4.chrX              10628859 30 + 21540570 CTCAATGATCCTCCATTGGACGAGGTT---Ggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2071547 30 -  4500979 GAAAGGGAACCTCCATTGGATGAAGTT---GGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     21223 30 -    90967 CTAAGGGAACCTCCATT---CGAGGATGACGGC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3558856 33 +  4147112 CTCAAAGAACCTCCATTGGACGATGTTGATGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   406377 30 +   823664 I

a score=94116.000000
s ce10.chrX              5272987 171 + 17718866 GACTGATCGTCGGAAAAATCGTCATCATCTCCCGAATGCAAGTTAATAAGGTCGCCGCTGGTAGATGGTGTCTGAGA-----------------------------------------------TGGTGGTGGAGGAGCTTTTTCCTTTGGACGGAACGACCTAGGGCTGATGGATGACTGTGCACGAGTGAATCCACTTGGCGGTGACGTATCTCTG
s cb4.chrX              10628889 180 + 21540570 cct---tcatccgaaaaatcgTCTTCGTCCGC------TAATTGGATCAAGTCACCACTGGTAGAAGGTATTTGAGA----------------------TGACGACGTTGGTGCT-------GGTGGCGGTGGAGGAGCCTTCTCTTTCGGACGGAAGGATCGTGGACTGATTGAAGACTGAGCACGTGTGAAGGCGGAAGGAGGAGAAGTGTCACTG
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   2071577 207 -  4500979 GCTTGGTCATCAGAGAAGTCATCTTCGTCAGC------CAGATTAATAAGATCCCCGCTTGTGGAAGCAGCTTGAGAGGTACTTTGATGGGAGGTGCTCTGATGAGAT--GTGCTCTGAGTCGGTGGCGGCGGTGGAGCCTTCTCTTTTGGGCGGAATGAACGAGGACTGATTGATGACTGGGCACGTGTAAATGT---AGGTGGAGAAGTGTCACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     21253 171 -    90967 CCTTGATCATCAGAGAAATAATCGTCATCAGcagaattcaaattgatGAGATCTCCACTAGTGGAAGGTTGTTGAGA-----------------------------------------------TGGCGGTGGTGGCGCTTTTTCTTTAGGGCGGTATGATCGAGGACTGATCGATGAATGAGCACGAGTGAATGCAGTTGGAGGAGAAGTGTCACtg
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3558889 168 +  4147112 CCTTGATCATCCGAGAAGTAGTCATCCTCAGC---ATGCAAGTTGATCAGATCGGTACTGGTTGATGGTTGTTgaga-----------------------------------------------tggtggtggtggagcctTCTCCTTTGGTCGGTATGATCTAGGGCTGATCGAAGATTGAGCACGAGTGAAGCATGAGTGTGGAGATGTGTCACTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   406407 171 +   823664 GATTGATCATCAGAGAAATCGTCATCATCGCTGGCTTGCAGATCGATGAGATCCGCGCTCGAACTTGGCACATCTGT-----------------------------------------------TGGCGGTGGTGGCGCTTTTTCTTTCGGTCGAAAAGAGCGAGGACTGATGGACGATTGGGCACGGGAAAATGCACTTGTTGGAGAAATATCACTG
i caeJap4.Scaffold18194 I 30 C 0

a score=-8982.000000
s ce10.chrX              5273158 40 + 17718866 -----TAAATATACATGTAATTCAAAATATCATGTTTA-TTTGACT---------
s caeRem4.Crem_Contig0   2071784 41 -  4500979 -----AAAAAGATTGTTTAGATTGACAGATTTCTGATATTGTTAAT---------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold527     21424 25 -    90967 --------aaatttg------------gttttcagaTG-AGTAAAA---------
i caeSp111.Scaffold527  C 0 I 8
s caePb3.Scfld02_0       3559057 25 +  4147112 --------AAAGTTA------------TATCGTTGATA-TTTCACT---------
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   406578 42 +   823664 Taatgtgaaaattaa------------aattaccgATA-TGTGAATATATGTAAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10629069 38 + 21540570 I

a score=388190.000000
s ce10.chrX              5273198 800 + 17718866  
s cb4.chrX              10629107 765 + 21540570  
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   2071829 768 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold527     21457 768 -    90967  
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3559090 770 +  4147112  
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18194   406620 816 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-17611.000000
s ce10.chrX              5273998 106 + 17718866 AGTTTGATTCTGCGCAATCGTAATAAGTTACCGTTTTTAGTTTTTTTACAGGCGTGCAAATAACTTTCCAAACGTATATTAAAGAGCTAAAATTTAAAAAAAATTA
s cb4.chrX              10629872  11 + 21540570 -------------------------aattac-----------------------------tgaCA-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2072597  10 -  4500979 --------------------------GTTCA-----------------------------TAACA-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     22225  26 -    90967 ---------------------------TTAC-----------------------------TAATTGTTT------------------------CTGGAAAAGGTTG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3559860  16 +  4147112 -------------------------GTTTAC----------------------------GTGACTCTTC-------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   407436   0 +   823664 C

a score=0.000000
s ce10.chrX              5274104 29 + 17718866 GTGTGTTTAGGAATAAGATATTCCAAGCC
e caePb3.Scfld02_0       3559876  0 +  4147112 C
e caeJap4.Scaffold18194   407436  0 +   823664 C
e cb4.chrX              10629883  0 + 21540570 C
e caeSp111.Scaffold527     22251  0 -    90967 C
e caeRem4.Crem_Contig0   2072607  0 -  4500979 C

a score=-17484.000000
s ce10.chrX              5274133 86 + 17718866 TAAAAATGATAGTTAATTTAATGCAAACAATTTGAGGTACAGCTGAATCTGAGTAGA----TTTAAAAAATTTTTTTTGATTATCTTTAA
s cb4.chrX              10629883 20 + 21540570 -------------------------------------CGTGACTCACACTTCCTAGA---------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2072607 19 -  4500979 --------------------------------------GCCCCTCAAAATTTGTAAA---------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3559876  8 +  4147112 -----------------------------------------------------CAGGAAGG-----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   407436 21 +   823664 ----------------------------------TGAAAATGTTCGTTCTTAATA-----------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     22251  0 -    90967 C

a score=143909.000000
s ce10.chrX              5274219 318 + 17718866 CACCTACCAATCATCCTCTCCACCTCTGGAATTGCCTTTTCGTACATTTCATACATCTTTTTGAAATAATCCCGTTTCAAGTTCATACTCGTCAACATATGCTG-AAATTATGGAACTATCATTGCAGTACTGTTATCAAAACGGAAGCAATGAG--------TCACAA--ACCTCATTGAGCTGAAACTCTTTCGAAACAGAGGATGCAAAAATGTCGGTGACCAACGCGTCTTTCATTCCCTCGTATTTCATCTGAATGGCATCTAATGATTCTTGGTGGGTCATTGAGTTTTCCTTCTCCAAATCTTTTTGCGCGATTTCAAGATC
s cb4.chrX              10629903 305 + 21540570 CACTCACCAAGTGCATGTTCCGTTTTTGGTATCATTTGGTCATACATCTCGAACATATATTTGAAATAGTCACGTTTCAAAACCATACTTGTCAGCACGTGCTA-Caattatcagaat----ttgaat-------------AAGGAA-GGATGAGTAA-----TAACACTAACCTGAGTCAATTGCAATTCTCTAGACacagaagaattgaaaatgtcGGTGACGAGAAGATCCTTCATTCCTTCGTATTTCATCTGAAGCGCGTCCATTTGCTCTTGTTTTGTCATCGTTGGCTCTTTGTCGTAATCCTTTTGAGCAATTTCGAGatc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2072626 304 -  4500979 TGCTCACCAATCTTCTCTTCAACCACTGGGATCAACTCGTCATACATATTCgccattgttttgaaatagtCACGTTtcaaaatcatacttgtcaacacATGCTG-CAATTATCATATG----TTATCA-------------GAGGAACTGATGAGTAA-----TACCAT--ACTTCGCTCATTTGCAACTCCTTGGAAAcggatgaagaaaaaatgtcggtgACAAGTGCATCTTTCATCCCTTCGTATTTCATTTGAGTCGAATCGTAAATCTCTTGTTTACCCATTGTCTGCTCTTTCTCAGTATCTTTCTGAGCAATTTCTAGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     22251 307 -    90967 CACACACCAATTTCTCTCTCCAAATCAGGCAGTGCTGTGTCATACAGCTCAAACATCCTCTTGAAATAATCTCGTTTCAATTGCATACTCGTCAACACATGCTG-AAATTATCA--------TTGCAC--TTGTTATCA-GAAGGAAGCGATGAGTAA-----TCACTG--ACCTCGTTTATTTGAAACTCTTTTGATACGGATGCA---AAAATGTCTGTAACAAGGGTATCTTTAATTCCTTCGTATCTCATCTGATTTGCATCCAAATTCTCTTGGTTAGCGAGAGTTTGCTCTTTATCCATATCCTTTTGTGAGATCtccaaatc
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3559884 320 +  4147112 TGCTTACCAATGACCAACTCAATATCCGGAATCGCCTTATCGTACATCTCAAACATCCTCTTGAAATACTCTCGCTTCAATTGCATGCTAGTCAACACATgctgaaaataatcagatg----TTGCACT-TTGTTATCA--AaggaagaaataaagaaatgagTCACAT--ACctcattcatttgaaattctctgGAAACTGACGCATTGAAAATGTCTGTGACGAGAGCGTCTTTCAGCCCTTCGTATTTCATTTGTGTCGCATCAAGGGTCTCTTGATTGGTCAAAGTGTAGTCTTTATCCAGGTCCTTCTGTGAGATTTCCAAATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   407457 257 +   823664 TACTAACCAATCATCGATTGCACCGTTGGAATCGCATCATTATAAGCTTCCCACATTTTCTTGAAATAGTCACGTTTCAGTTGCATGTGTGTGAGCAC-------AAAT-------------TCGT-------------------------------------TCACCG--A-------------AAATTCTTTGGAGACTGACGAAGTGAAGATGTCAGTGACCAATGAATCTTTAAGCCCCTCGTATTTCATCTGCATTGCATCACAAGTCTCTTGGTGTGGAGCAGTGCGCTCTTTGTCCGCGTCTTTTTGAGCGATTTCGAgatc
i caeJap4.Scaffold18194 C 0 I 981

a score=183692.000000
s ce10.chrX              5274537 593 + 17718866  
s cb4.chrX              10630208 566 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2072930 582 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     22558 574 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3560204 760 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   408695 522 +   823664  
i caeJap4.Scaffold18194 I 981 I 1742

a score=-19302.000000
s ce10.chrX              5275130 62 + 17718866 ATTTGTTGA---TAT-----------TTGTTCTCT-----ATGTTTTTCAACAAAAAAGCTACAATCAACAAATAATACAA
s cb4.chrX              10630774 53 + 21540570 aattg--aaaattagcaataaaattacttattatt-----aaatttataaacgaaaaa---------------------GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2073512 45 -  4500979 ATGCG--GA---CGACAGAACATCTGCTGATgact-----aaa-----aatggaaaaa---------------------aa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     23132 41 -    90967 TTTGG--GA---TGCGAACGAACACA-TGTTCGGT-----ATACTTT--------GAA---------------------AT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3560964 40 +  4147112 TATAC--GA---TTT---CGCACTCACTGTTCCCTCCCAAATACC------------A---------------------AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   409217 1742 +   823664 I

a score=173324.000000
s ce10.chrX              5275192 607 + 17718866  
s cb4.chrX              10630827 618 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2073557 577 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     23173 553 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3561004 819 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   410959 724 +   823664  
i caeJap4.Scaffold18194 I 1742 I 719

a score=-2485.000000
s ce10.chrX              5275799 39 + 17718866 TACAACTACGAAGATAT-------TGTTCAAAGGGAAGAT--------------------ACCGCG
s cb4.chrX              10631445 45 + 21540570 AGTAATAAGgtaaaaac-------gttt------gaaaaatgaaaatttata--------attttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2074134 59 -  4500979 TATAATTATgaagaaat-------tattcaaaaggAAGAAGGACAAGCTATAAggtattgattttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     23726 56 -    90967 TATAATTACGAAGATAC-------gagtcaaaaagaaaatgaaaaagcaaTAAGGTA---atttta
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3561823 61 +  4147112 TATACTGACGAACATATCTCACTAGAGTTCCATATGAATATAGAAGACAGT--GATC---AGTTTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   411683 719 +   823664 I

a score=249960.000000
s ce10.chrX              5275838 326 + 17718866 TTG-----------------------------AG---GTTTAACAAAACCTCCAACGATGTCATCGTCTTTGTGCACATACAAAAAACGGCGGGCACAACATTCGAGAAATTCCTAGTTCGCTACCAACAAAACCTACCGTGCAAGTGCCAAGCGCACAAAAAGCGATGCAATTGTGGACGCAGATCATCTAATGAGGTATGCCGAATAAGTGAAAA-G-------CAAC--------------------TTAT-----------------AAACTGAAA------------------------GT-------------TTTTAGACGTGGCTGTTCTCACGGTATTCAACCGGTTGGGTATGTGGACTTCATGCAGATTTTACGGAATTGGTTGTCAATAGTTGCGTTCAGAAGGTGTTGGATAAGCAAGCAGGTTA-------------GT--
s cb4.chrX              10631490 409 + 21540570 g--------------------------gctTCAG---ATTCAACAAAACTGCCAACGATGTCATTGTATTTGTGCATATTCAAAAAACAGCGGGCACGACATTCGAGAAGTTTCTAGTACGCTACCAACAGAATCTACCATGCAAGTGTCAGGCGCACaaaaaaaGATGCAATTGTGGGCGTAATGCGTCAAATGAGGTAGGT--AATAGGCAGGAATG-------GGAGTCGACTTTGCTACTGCTACCCaaaaagagaaacttt--ttaaaactaaaaaagcgagaaggggaaaaCGGTAATGGGTGT----CATTGTTTCAGACGTGGCTGTTCTCTCGCTATTCAACTGGATGGGTATGCGGGCTTCACGCTGATTTCACTGAACTTGTCGTCAACAGTTGTGTACAGCGAGTTTTGGATAAGCAAGCAGGTTGgtggcaaaaaaagaa--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2074193 367 -  4500979 gaa---ttatttgttTCTTAATAAAAAGTTGCAG---TTTCAACAAGTCTTCCAACGACGTGATCGTATTTGTCCACATCCAAAAAACCGCCGGAACtactttcgaaaagtttctaGTACGCTACCAACAAAGTCTGCCATGCAAGTGTCAAGCGCACAAAAAGCGTTGCAATTGTGGGCGTAATGCCTCAAATGAGGTAGGT--AATAGGCAGAAA-G-------CAATTTGACTTT------------TAAA---------------TGAAACTAAAA------------------------GTGTGT----CATTGTTTCAGACGTGGCTGTTTTCCCGATATTCAACTGGATGGGTTTGTGGTCTTCACGCCGATTTCACTGAACTGGTTGTCAATAGTTGTGTTCAACGAGTTTTGGATAAGCAAGCAGGT---------------AA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     23782 374 -    90967 taaccaatttccttatttttattttatttttcag---ttttaacaAGTCTTCGAACGATGTCATCGTGTTCGTTCACATCCAGAAAACCGCCGGTACAACGTTTGAAAAGTTTCTTGTGCGATACCAACAAAGTCTGCCTTGCAAGTGTCAAGCGCATAAAAAACGATGCAATTGTGGGCGAAATGCGTCAAATGAGGTAGGT--A---GTGAGGAA-G-------CAAT--------------------TAAAAAGGAGAACTTTAATTGAAACTAAAA------------------------GTGCGT----CATTGTTTCAGACGTGGCTGTTCTCGCGGTACTCAACCGGTTGGGTATGCGGACTTCATGCGGATTTCACTGAATTGGTCGTCAATAGTTGCGTTCAGAGAGTACTGGATAAGCAAGCAGGT---------------aa--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3561884 363 +  4147112 CAG----------------------ATTTGACAAGCCGTTCAACAAGTCATCCAACGACGTGATTGTGTTTGTGCACATTCAAAAGACCGCCGGAACAacattcgaaaagtttcttgTTCGCTACCAACAGAGTTTACCGTGCAAGTGTCAGGCGCATAAAAAACGATGCAATTGCGGACGAAATGCGTCAAATGAGGTAGGT--AATTGTCAGGAA-GTAGCAGCCaat--------------------taaaaag--aaacttcAATCGAAACTAAAA------------------------GTGCGT----CATTGTTTCAGACGTGGCTGTTCTCACGGTATTCAACCGGTTGGGTTTGCGGACTTCATGCGGATTTCACTGAATTGGTTGTGAATAGTTGCGTTGAACGAGTGTTGGATAAGCAAGCAggt---------------aa--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   412402 341 +   823664 -----------------------------TTAAG---GTTCAACAAAACATCCAACGATGTGCTAGTATTTGTCCACATCCAAAAAACAGCAGGAACTACCTTCGAAAAGTTTCTAGTCCGCTACCAGGAAAATTTGCCGTGCAAGTGTATGGCGCACaaaaaaaGATGCAACTGCGGGCGTAATTCATCAAACGAGGTAGGA--AATAATTGTGGC-G-------CAGC--------------------GCGAAAG--------------AAAGTAATA-----------------------TGTacatattgttttattttagaCGTGGCTGTTTTCGCGCTATTCGACTGGATGGGTTTGTGGGCTTCATGCAGACTTCACCGAACTGGTCGTCAATAGTTGTGTGCAACGGGTGCTGGATAAACAGGCAGGT---------------Gagt
i caeJap4.Scaffold18194 I 719 I 1766

a score=-14062.000000
s ce10.chrX              5276164 43 + 17718866 TTGCA---AAACTTTATTTGGTGTTAAACAAGTTTAATTGGTTAAC-----
s cb4.chrX              10631899 23 + 21540570 gagcg---gAATC-------------------------TTGATTGCTTTAC
i cb4.chrX              C 0 I 141
s caeRem4.Crem_Contig0   2074560 10 -  4500979 TAGCA---G---------------------------------TCGC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     24156 10 -    90967 aaaaa---GGACT--------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562247 33 +  4147112 caaaaatgaaact---tgtgGGGTCATATGAAGTTA---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   412743 1766 +   823664 I

a score=-20947.000000
s ce10.chrX              5276207 186 + 17718866 AATTTGAACATTCCAAAAATAAAAAGTTTCACACATTGAAACAATTATCACAGTTAATTATAGCCTCATTGCTATCTAAAACCGGGCATCGTGTGCAAATTGCAAGTGTGTGCACATTG-----------TGCAGGTTTGTTTTTAGTACCAAAAAGTATAAGTGATAATTTTGAGTTTCAAATCCTACAATAGTAC
s caeRem4.Crem_Contig0   2074570  98 -  4500979 AACTTGGA-----CGGggaagaagtttt----------------------tgagaaattac---cTTTTGTAATGTTAAAACC-----CCTTTCTTGTATTTAGACCATACATGaacaa-------------------------------cataaa--------aataa----aag---------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     24166  94 -    90967 -------------------TGAAATACTCTAC------------------CGGTGActcag-----------aaattaaaa----------------aattatgaagGAAGATGGTTCG-----------AGACGGTTTG------ATGCCACAGG----AAGGAATCA----GAGattaaag--------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562280 106 +  4147112 -------------------TGAAATGTT----------------------TGATAACCTAG---TTTGAGACAACCTAAAT----------------TAATCAAAACATGGATGATTCATACATTAACTCAGACGGTCTG------GCGCCATAAC----TAGTAATCA----TAGATTA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   412743 1766 +   823664 I
e cb4.chrX              10631922 141 + 21540570 I

a score=-9999.000000
s ce10.chrX              5276393 35 + 17718866 CCAAAAATTTCATTTTCACTTTTCACGAATACCGG-------
s cb4.chrX              10632063 34 + 21540570 ctaaaaatgggat------ttttca--attcactAGTATTGA
i cb4.chrX              I 141 I 17
s caeRem4.Crem_Contig0   2074669 10 -  4500979 acgaagacga--------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527     24260 20 -    90967 ---aaaacaa-----------ttca--attatcaaa------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562386 20 +  4147112 ---TAAATAT-----------GTCA--AATAACAGA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   412743 1766 +   823664 I

a score=-3278.000000
s ce10.chrX              5276428 15 + 17718866 CACCAAAAGCACTA-C
s caeRem4.Crem_Contig0   2074679 11 -  4500979 tacaaaaacta-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     24280 14 -    90967 aacaaagtgTGATG--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562406 15 +  4147112 TAGTATAACTGatag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   412743 1766 +   823664 I
e cb4.chrX              10632097 17 + 21540570 I

a score=-22535.000000
s ce10.chrX              5276443 264 + 17718866 TACAACAACAAAAA--------ATACAGACACATACTGTTAAACTTACGAAACGACATTCGCTCTTTGAGACTCCG------TGGTTCAGATATGTC----------TCTTGTTCTATTGCGACCTGA--------ATA------AATGTTGAAATACTTTTAGAATCTTTTACAATCCTATTTTTTATTTTAGAA---ATACTAAACA-TTAAATCAAATTTAGTAAA-CAGAAAGGAAAAGTGACGTAGCG-------GTCATGTTAATTGATTGAATTCGATTTGTGAATTGATAAGA----AGAAATATGAGAA-----------------
s cb4.chrX              10632114 219 + 21540570 -----------------tatg-aaagtgaaaaatatt-----------gaaatgg--------TTGAAAGGCTTAT------CGTCGGGAA---ATCGGTCATTTCATTTTCACTTATCGCATTCTGATTTTGGTGACA--------TTTGATGAGAC------GCGC----------------------TTGATA---ATAGAAAGGA-TGCG-TCAAAATATCTTTG-GATATCTGTTCATCG--CTTCTCTCACAGTTGCTTTAGCTTT-----GCCGA-ATTTCC----------CTGAGGGGGaatggaaaaaagac----------aaa
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   2074690 279 -  4500979 ----------aaaaacagaca-agagaaacaaacaaT----GACTTACGAAACGACATCCGCTCTACGAAACTTCTAGGCTGTGTCGGGGG---GCC----------TTGCGATCTACTTCGATCtgaataaaacaacaaaa---attttaaacgtAT------ACTCT------ATCa--tgttccatttttgta---aaagtgAGAA-ATGG---AAAGTTCCTCGG-GAAGTCGGGAAATCGGTGttctatcaaattttcattttctttgattgGACAC-ATCTCT--AATGATAACAGAAGGGATACGTCAAAATATCTTTCTCTGTAGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     24294 252 -    90967 -------ACAGAGAACAT----AGATAGACAGACAAG----AACTTACGAAACGACATTCGTCCGGCGAAGCTTCT------TTCTTTGGG---TTC----------ACACGATTTGTGGCGCCCTAA--------AGATTAttcattttagaaatta------aCTCTG----AATCA----TTCAATCTTGAtattgaaagtgaaaaatgag---aaagtttGTCGG-AAAGTCGGCAAATCGGcgattcatcaaaatttcattttcattgattgG-----ATTTACTGAATGATAAGGGAA-AGATAGATCCaaa-----------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562421 243 +  4147112 aacaaacaaaaaaaacatgtacATATGGACGGACAAT----AACTTACGAAACGACATTCG---------ACTTCC------TCCTCCAGG---GTC----------TTTCGACTTGCTTCTTCctga--------aca------agttttcaaatga------aatct------atca-attttcaaaatttatc---aaaatgaaaa---gg---gaAATCTGTTGGAAAAGTCGGGAAATCGGTGATTCgtcaaaa-tccattttcattGATTGG-----ATTTATAAAGTGATAACAGAA-AGATACATCAGAA-----------------
i caePb3.Scfld02_0      C 0 I 72
e caeJap4.Scaffold18194   412743 1766 +   823664 I

a score=-5257.000000
s ce10.chrX              5276707 51 + 17718866 ATGGATTCTT-----------------GGATAGGATTGCCTAAACTTTG------TTTGAAAGACATTAGAAAT
s cb4.chrX              10632333 25 + 21540570 atccaatttc---------------------------------------------cgcGGGCGG----AAGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2074969 53 -  4500979 ATTCATCTTC-----------------TCTCATAGTGGCTTTAGCTTTGCGAATGCCTAGAGGA----AAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     24546 74 -    90967 atatcttttcttttgtagACACAATTCTCCTACAGTGACTTTGGCTTAGCGGCTGCCTAGAGAAGCCTAGGGGG
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3562664 72 +  4147112 I
e caeJap4.Scaffold18194   412743 1766 +   823664 I

a score=-2028.000000
s ce10.chrX              5276758 44 + 17718866 TTGAAAAACGTTAA---CAAAATTGGATTT-------TTGGGCAAACAT------------TTTTA
s cb4.chrX              10632358 33 + 21540570 ---------ATAAAAAaca-----cgatg------------------at-gatgatggtggtGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2075022 55 -  4500979 ---------ACAAAATCCAATTTCCGATTT-CTGCGGGCGGAAGGacat-aaaaaagagaatgatg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     24620 62 -    90967 --GAGAAGGACAGAATCCAATATCCAATTT-CTGCGGGCGGAAGAacat-aaaaaagagagtgaTG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3562736 65 +  4147112 TTGAGGAAAA-GGGACACAAAATCCAATTTGCTGCGGGCGGAAGgacataaaaaaagaaagtgatg
i caePb3.Scfld02_0      I 72 C 0
e caeJap4.Scaffold18194   412743 1766 +   823664 I

a score=374585.000000
s ce10.chrX              5276802 415 + 17718866 ATTTGTAGGTCATAAAAAGAAAAGAAACTACTTCTACACAACATTTCTTCGCAACCCAACTGATCGATTTATCTCGGAATTTCGACATGTTCAAAGAGGCGCTACATGGATATCGTCTAAGTA--TGATAA----GCGATAAGCGAAA--GTTAAAACAGCTTGC--CAATCGAAA-----------TTTCAGGCACGTTTGCAATGGGAAGCCAGCATCTGTTAATGACCTTCCGACATGTTTTGATCCCCGAATTGGGTGGGAAGGTGTTTCGCTAGAAGAGTTTATTTCATGCCCGTACAATTTGGCATTCAACCGACAAACGCGAATGTTGTCCAATTTATCACTTGTCGGATGCTATGAACATATGAGAAAGCCTTCCTATGAACAAGACAAGATAATGATAGAAAGTGCGAAAGAAAATTTAAGGTTAGT
s cb4.chrX              10632391 408 + 21540570 ATTTGCAGGtcataaaaagaaaagaaactaCTTCTACACTACATTTCTGCGCAACCCAACTGATCGATTCATCTCGGAATTTCGGCATGTTCAAAGAGGCGCTACATGGATATCTTCCAAGTATGTGATAA----GCCGC-----------TT--TGGGAACTGT--TAAAAACAATG---------TTTCAGACACGTTTGCAACGGACGACCAGCGTCAGTTAACGATCTGCCGACATGCTTCGACCCGCGCATTGGCTGGGAAGGCGTTTCAGTGGAAGAGTTCATCTCATGCCCTTACAACTTGGCCTTTAACAGACAAACCAGAATGTTGTCAAATTTATCACTTGTTGGATGCTATGAACATCTACGTAGGCCGTCTTATGAACAAGACAAAATAATGATGGAAAGTGCGAAAGAAAATCTGAGGCAAGT
i cb4.chrX              C 0 I 67
s caeRem4.Crem_Contig0   2075077 424 -  4500979 aTTTGCAGGtcataaaaagagaagaaactaCTTCTACACTACATTTCTACGCAACCCAACTGATCGATTCATATCGGAATTTCGGCATGTTCAAAGAGGCGCTACATGGATATCATCTAAGTA--TGATAA----GCGATAATCGAAA--GTT--TATAACTTGT--CAGAAGAAAAATCGCCCCATTTCCAGACATGTCTGTGATGGGAAACCCGCGTCAATCAACGACTTGCCAACATGTTTTGATCCGCGGATCGGATGGGAAGGTGTATCATTAGAAGAGTTCATCTCTTGTCCGTACAACTTGGCATTCAACAGACAAACCAGAATGTTGTCCAATTTATCACTTGTTGGATGCTATGAACACTTGCGTAAACCATCTTATGAACAAGATAAAATAATGATGGAAAGTGCGAAGCAAAATCTGAGGCAAGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     24682 411 -    90967 ATTTGCAGGTcataaaaagagaagaaactaCTTCTACACTACATTTCTGCGCAATCCCACTGATCGATTCATCTCGGAATTTCGGCATGTTCAAAGAGGCGCTACATGGATATCTTCCAAGTA--TGATAA----GCGATAA--------GTT--AGCAACTTGTTTTAATAATCAAG---------TTTCAGACATGTTTGCAATGGGAAACCAGCGTCAGTCAATGACTTGCCGACATGTTTTGACCCTCGAATCGGATGGGAAGGTGTTTCTCTGGAAGAGTTCATTTCCTGCCCGTATAATTTAGCATTCAACAGACAAACCCGAATGTTGTCTAATTTATCTCTGGTTGGATGTTACGAACATTTAAAGAAGCCTTCTTATGAACAAGATAAAATTATGATGGAAAGTGCAAAAGAAAATCTGAGGTGAAT
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3562801 420 +  4147112 atTTACAGgtcataaaaagaaaagaaactacTTCTACACTACATTCCTCCGCAACCCAACTGATCGCTTCATCTCCGAGTTTCGGCACGTTCAAAGAGGCGCAACATGGATATCGTCAAAGTA--TGATAACGACCCGATAAGGGAAAGTGTT--GATAACTTGT-------atcgagtttt-----tttcagacacgTTTGCGACGGAAGACCCGCTTCAGTGAACGACTTGCCGACATGTTTCGACCCGCGCATTGGTTGGGAAGGTGTCTCTCTAGAAGAGTTCATCTCGTGCCCCTACAATCTAGCATTCAACCGGCAAACCAGAATGCTATCCAATTTATCACTGGTTGGATGTTACGAACATCTGCGGAAGCCGTCGTACGAACAAGATAAGATCATGATGGATAGTGCGAAGATGAATCTCAGGTGAAT
i caePb3.Scfld02_0      C 0 I 61
s caeJap4.Scaffold18194   414509 412 +   823664 attTCCAGGCTACAATAAAAAGAGAAACTACTTCTATACAACATTTCTGCGCAATCCGACCGATCGTTTCATCTCTGAATTTCGGCATGTTCAAAGAGGCGCAACGTGGATATCATCAAAGTA--TGTTCACGCCTCTTTTATCA-----CTT--TACTAATCAT--TATCAAC-------------TTTCAGACATATCTGCGATGGGAAACCGGCGTCAGTGAACGATTTGCCGACATGTTTCGACCCGCGAATTGGCTGGGAAGGCGTCTCATTAGAGGAGTTTATATCATGCCCGTACAATTTGGCATTCAACCGACAGACACGGATGCTGGCAAACTTGTCACTGGTGGGATGCTATGAACACTTGAGGAAACCGTCTTACGAACAAGACAAAATAATGATAGAAAGTGCCAAGCAGAATTTGAGGCAAGT
i caeJap4.Scaffold18194 I 1766 C 0

a score=91.000000
s ce10.chrX              5277217 1 + 17718866 T
s caeJap4.Scaffold18194   414921 1 +   823664 T
i caeJap4.Scaffold18194 C 0 I 104
e caePb3.Scfld02_0       3563221 61 +  4147112 I
e cb4.chrX              10632799 67 + 21540570 I
e caeSp111.Scaffold527     25093 1 -    90967 I
e caeRem4.Crem_Contig0   2075501 1 -  4500979 I

a score=791.000000
s ce10.chrX              5277218 10 + 17718866 -GTTTCGGTGA
s caeRem4.Crem_Contig0   2075502 11 -  4500979 TTTTACAGTGA
i caeRem4.Crem_Contig0  I 1 I 46
s caeSp111.Scaffold527     25094 10 -    90967 -TTTTGAGAGA
i caeSp111.Scaffold527  I 1 I 23
e caePb3.Scfld02_0       3563221 61 +  4147112 I
e caeJap4.Scaffold18194   414922 104 +   823664 I
e cb4.chrX              10632799 67 + 21540570 I

a score=0.000000
s ce10.chrX              5277228 724 + 17718866  
e caePb3.Scfld02_0       3563221  61 +  4147112 I
e caeJap4.Scaffold18194   414922 104 +   823664 I
e cb4.chrX              10632799  67 + 21540570 I
e caeSp111.Scaffold527     25104  23 -    90967 I
e caeRem4.Crem_Contig0   2075513  46 -  4500979 I

a score=182.000000
s ce10.chrX              5277952 2 + 17718866 AA
s caePb3.Scfld02_0       3563282 2 +  4147112 aa
i caePb3.Scfld02_0      I 61 C 0
e caeJap4.Scaffold18194   414922 104 +   823664 I
e cb4.chrX              10632799 67 + 21540570 I
e caeSp111.Scaffold527     25104 23 -    90967 I
e caeRem4.Crem_Contig0   2075513 46 -  4500979 I

a score=-556.000000
s ce10.chrX              5277954 2 + 17718866 TT-
s caeRem4.Crem_Contig0   2075559 2 -  4500979 tt-
i caeRem4.Crem_Contig0  I 46 C 0
s caePb3.Scfld02_0       3563284 2 +  4147112 -ta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   414922 104 +   823664 I
e cb4.chrX              10632799 67 + 21540570 I
e caeSp111.Scaffold527     25104 23 -    90967 I

a score=234890.000000
s ce10.chrX              5277956 320 + 17718866 TTTCAGAAAAATGTCATTTTTTGGAATCAAGGAACAAATGGACGATAGCCAGTTTTACTTTGAAAACACTTTTGATATGCAGTAAGT-------------------------TTACACTAGTTGAACGTATTGATTAAAAGA-----TTATTG--ATTAAGGTTCACTCGCAAAATGTCAGTCTGGGGGAAAAGCAAGTCAAACGACACGGTGCTATCGGAATCTCAGCTCGCCTATATTCGAAACGTGAACAAACTAGACTGGGAACTTTACGAGTATGCAGTCCAACTTTTTGATGAGCGAGTCAGTCAGCTACGAAGAAAGCGACGAATACGCCGTTGAAGAGCACTTG
s cb4.chrX              10632866 320 + 21540570 TTTCAGAAATATGGCATTCTTCGGTATCAAAGAACGGATGGATGACAGTCAGTACTTTTTCGAAGCCACGTTTGATATGAAGTAAG--------------------------ACATTTTCGCCAAAAGCTTGTATGATATGA------TAgttaatttcagattctctcgaaaaatgtcAGTATGGGGAAAAAGCAAGTCCAACGACACAGTGCTAACCGCATCTCAACTTGCCTACATTCGAAACGTGAACAAGTTAGACTGGGAACTCTACGAATATGCTCTTCAACTTTTCAATGAGCGTCTCAGTCAGCTTCACAGGAAGAAACGACGTCTTCGTTGAAGAGgccttc
i cb4.chrX              I 67 C 0
s caeRem4.Crem_Contig0   2075561 317 -  4500979 tttcagaaatatggCGTTTTTCGGAATCAAAGAACGGATGGATGACagtcaattcttttttgagaacacATTTGATATGACGTAAGT----------------------GACACATgtcttttttcagtatatCTAATTCAg------taagt--tttcagattctctcgAAAAATGTCAGTCTGGGGAAAAAGTAAATCCAATGACACAATACTAACGGATTCTCAACTCGCGCACATTCGAAACGTGAACAAGTTAGACTGGGAACTCTACGAATATGcaatcaaactttttgatgagAGAGTCAGTCAGCTACGAAGGAAACGACGAATACGCCGTTGAAGAGG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     25127 319 -    90967 tttcagaaatatggcatttttcggaatcaaAGAACGGATGGATGACAGTcaattctattttgaaaacacatttGGCATGAAGTAATA----------------------GACATTCGTTCCCCGAAAAAActactgaaaat---------tca--ttacAGATTCTCACGTAAAATGTCAGTATGGGGGAAGAGCAAGTCGAATGACACAGTACTAACCGACTCCCAACTAGCCTACATTCAAAACGTGAACAAGTTAGACTGGGAACTCTACGAGTATGCTGTCCAACTTTTTGATGAACGAGTCAGTCATCTTCGACGAAAGCGGCGAATACGTCGTTGAAGAGCACTTG
i caeSp111.Scaffold527  I 23 C 0
s caePb3.Scfld02_0       3563286 321 +  4147112 ttACAGAAACATGgcgttttttggaatcaagGAAAGAATGGATGACAGCCAGTTCTACTTCGAGAACACATTTGACATGAAGTAAGA-----------------------ACTCAAACTCAATGAAACAAACACCAATACTA------TGATG--TTTCAGGTTCTCTCGAAAAATGTCAGTTTGGGGAAAAAGCAAATCCAACGACACCGTCCTGACTGAATCTCAACTCGCCTACATTCAAAATGTCAACAAGTTGGATTGGGAGCTCTACGAATACGCCGTCAAACTTTTCGATGAGCGAGTCAGCCTTCTACGACAAAAGCAGCGAATGCGTGGCTGAAGAGCACTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   415026 350 +   823664 TTTCAGAAATATGGCGTTTTTCGGAATAAAAGAACGAATGGATGACAGTCAATTCTACTTTGAGAATACGTTCgatatgaagtaagttttaTACTAGTATTTAGTTCGAAACACCTACACATTTACTATAATAcatattattttctttctttc--ttccagatTCTCCAGAAAAATGTCAGTATGGGGGAAAAGTAAGTCAAACGACACAGTGCTAACCGACGCACAACTTGCCTTCATCCAAAACTTGAACAAATTGGACTGGGAACTCTACGAATATGCACTTCAACTCTTTGATGAACGAATTGAGCAAGTCCGGAGGCAACAACGAATGCGCGCTTGAAGAGTGCTCG
i caeJap4.Scaffold18194 I 104 I 28

a score=-4354.000000
s ce10.chrX              5278276 16 + 17718866 CTCTCTT----TACTG-CTC---------------------A---
s cb4.chrX              10633186 31 + 21540570 ttcaatttctttgcTG-CTCGAAGAGGA-------------gcga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2075878 26 -  4500979 --CACTTTCTCTACTG-Ctcaagaagat-------------g---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     25446 41 -    90967 CTCACTTTCT-TGCTGCCtcaagaagatgagaaaagaagaag---
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3563607 19 +  4147112 TCGACTG----------CTcaagatgat-------------g---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   415376 28 +   823664 I

a score=83305.000000
s ce10.chrX              5278292 133 + 17718866 AAGAAGAAGAAGCAGCA----TTTCTCAAATTGCC-------GTCTGTTTGCTCTACTTATTA-GATCTCT---------TCGCCA---------CCCAATTATTATGATTCGAAACGGG-T--AAC-TCAATTGTATTTC-------------AACTTGTCTTC-TCAATCAACGAAT--AA----
s cb4.chrX              10633217 169 + 21540570 aaaaagatgaagaagcatcaatttctcaaattgcCCCCGTCTGTCTGTTTGCTCTACTCATTA-GATCTCTTCCTCAACACCACCG---------CACAATTATTATGATTCGAAACGGG-TTAAAC-TCAATTGTCTTCTCACACACACGCATAACTTGTATTTCTCAATCaacgaaaaa------
i cb4.chrX              C 0 I 756
s caeRem4.Crem_Contig0   2075904 125 -  4500979 aaaaagaagaagaagcat---ttTCTCAAATTGCC-------GTCTGTTTGCTCTACTTATTA-GATCTCTT--------CCGTCA---------CCCAATTATTATGATTTGAAACGGG-T--AAC-TCAATTGTCTTCTCA-----------AACTTGTATTT-----TCA--------------
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold527     25487 134 -    90967 aagaagaagaagcagca----TTTCTCAAATTGCC-------GTCTGTTTGCTCTACTTATTA-GATCTCT---------CCGTCA---------CCCAATTATTATGATTCGAAACGGG-T--AAC-TCAATTGTCTCTCTTC----------TACttgtattt-tcaatcaaCGAAA--------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3563626 138 +  4147112 aaaaagaagaagcagca----tTTCTCAAATTGCC-------GTCTATTTGCTTTACTTATTA-GATCTCT---------CTGTCACCTCCTCTCCCCAATTATAATGATTTGAAACGGGTT--AAC-TCAATGGTCTTTCT------------TACAagtattt-tctttc----aaa--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   415404 142 +   823664 aagaagaaggcgaagCGT---AATCATAAATTGCTGCC----GTCTGTTTGCTCTACTCATTAGGATCTCT---------TTGCCACCT------CTCAATTATTATGATTCAATACGGG-T--TACATCAAATGCGTC---------------TACTTGTCTTT-TCAAACAACGAAA----TCAA
i caeJap4.Scaffold18194 I 28 C 0

a score=-65917.000000
s ce10.chrX              5278425 295 + 17718866 --TATTAAACAATGCTCAA--TCAATTAAATATTTTCACTTATAATAAATGATTTATGAATTTTTTTACGGCAATTAATTTATT---ATACATTTGTTGTTGGAGAACATTTAAGCACAAAATTTCATTATTCA-AAATTTAAATTCACTTACGTTTTCCAAATGTTACGCTTCCTTTTCGCAAGAATCCGTTAG----TCTTGACTACGTAATC-ACCACGAATGTCTTAAAATAAGTTTC-------ACAAATATAGGTAATAA-CAATTTTTAA--TTTATTATAAAGCTCTGCTC----------ATAAATTGTTTGTAGGAGC
s caeRem4.Crem_Contig0   2076042 116 -  4500979 --TATTGCA-A-----------TAAATGAACGATTTCACTT-------ACTGTTTTTGAAG------------------------------------------------------CG------------------AAAATTGCA----------------------------------TCgaggcatttttcaaa--------------------------------------agggataTA-------GATGGAGTTGAATAGAA-TAGAGATT----------------TCTGTGTT----------CCA--------AAA-----
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold527     25621 198 -    90967 --TATTGCA-AATGCTCAA---TAAATAAACGATTTCACTt-------acgatttttgaatat-------------------------------------------gaatttGAACGGAAA----CATCATAGATAATACGAAA----------------------------------TCTAACGAGACAACAAGGGCTTCGTGGTTT--TTGTC-AATACag-------caaaaaagtgtttactAATCATGATATGGAAAACAA-CACGCGTCAA-------TGTGAAATTGGTTTT----------cca--------gaaatgat
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3563764 117 +  4147112 --ttttgca-attgct---------------------------------------------------------------------------------------------------cagaaa--------------aaaattaaa----------------------------------tcgtGTGAATCTACTAG----TATTGGATT-------------------------GAAGATGTT--------------TGGAATATAA-CAGAAACTAA-------AATGGAATTAGCATT----------ATGCAGAGTTAGAAGGGCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   415546 262 +   823664 AATATATGG-AATGCTCAACtttgcatttttcatttcactt---------taCTTTTTAAAAGgaataaattaattatttagtttcaaaatgttttattttaatgacaaggcggaaagaaaaaaaagctgG----AAATTTAGA-----------------------------------------AGTTGACCTG--CGCTGTAACTT--TGCTCTAATGTAGCCCCGCCTACTAAACTGCG-------CCGCACTTGGAAAAGGGCCGcgaattcatattttttattctgtttttttttgttaaaaaattataCAATTTGCACGAGC
i caeJap4.Scaffold18194 C 0 I 176
e cb4.chrX              10633386 756 + 21540570 I

a score=-21213.000000
s ce10.chrX              5278720 221 + 17718866 TCTAATGA--------TTATTCTAATGATGCTCAGTCACATT----ATAAAGGA-----TTCATTCTGAGGTCAAAAAGGGAACTCGAAGATTTATTTTGAGTGCAATACTATTATAGTGTGTAAGACTCCTAACACGATTTGCACAATTCATTGGAATTGTAGCCTACCGTAACTGAAAACCAGATAACTTTACAATTTTTGCGAACTAGGAAACCGCTATAGAACAATACTCAAAA
s caeRem4.Crem_Contig0   2076158 130 -  4500979 ---TAGCA--------TACAACTAAT-------------ATTGGACACACAAaataattccagaaattttcatAGTAA---------AAAATGTA----------ACGACTCGTACA----GCACATATATTTC-------TATATTGCCTGATATTAGTTT-TCCGACA-----------------------------------------------------GCAcattaatcaaaa
i caeRem4.Crem_Contig0  C 0 I 140
s caeSp111.Scaffold527     25819 120 -    90967 tttaatcaaaaatgtcaaaaactAAT-------------ATT----GCTAAGAA-----TTACAACTATCGAGAGTCTG----TTCGAAGATTGA----------GAGAAGACGACA---------AATATTAG-------TTTCTAAGCCAATATAAACTTgttc------------------------------------------------------------------tcaaga
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3563881 121 +  4147112 TCTTATTA--------TAGAACTAA---------------------ACGGAAAA-----CTAATACTAACGACAAAAC---------AAGATTAA----------ATTTCTGCCACA----GCAAGAATTTTAA-------TCAACTATTCACTGAAAACGTGATTACTC-----------------------------------------------------TAACTttgatcaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   415808 176 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I

a score=-1297.000000
s ce10.chrX              5278941 7 + 17718866 CTCATTC
s caeSp111.Scaffold527     25939 1 -    90967 a------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3564002 1 +  4147112 a------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   415808 176 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I
e caeRem4.Crem_Contig0   2076288 140 -  4500979 I

a score=-18648.000000
s ce10.chrX              5278948 153 + 17718866 GGATGTACATCATTTGGCGAAAATGtttaaaattttaatattaattGCCCGGTGGT---GTTTTTCTTTTGTAATAAGTGCAGTTAGAAATTAAAAACAACAAAATCGTAAAAAATGGTAAGAATG-------TATTTCTTCAAC---AAAAAATCAACAGTTACG
s caeSp111.Scaffold527     25940  43 -    90967 -------------------aaaacttgttAA----------------------------------------------------------------------------------------AAAACCA-------TGTTT----AAC----AAGTTTCGATGGCCGC-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3564003 118 +  4147112 -----------------ctacaatttttcgaaGCGAGATGGCAAATATTCGATCG------GTTTCTCCGCCAATAAACTTGTTCtcgag--agaagaaaaaaacttgtcaa-------aaaactA-------TGTTT----AAC----AAGTTTCGATGGCCGC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   415984 140 +   823664 --------------GAATAAAAACAATCCAa--caaaaagttaaatttgaaattttcccgGTTTACTGGGTGGAAATGCGCTATTTAGAACGACACTACAAATATTCGCTGCAAG----AAAACAAGGATAAGtgtta----aatataaaaaatacgAAACATG--
i caeJap4.Scaffold18194 I 176 C 0
e cb4.chrX              10633386 756 + 21540570 I
e caeRem4.Crem_Contig0   2076288 140 -  4500979 I

a score=10757.000000
s ce10.chrX              5279101 218 + 17718866 -------TGTATTTAAAAAAGAGTTTC-AATTTTATGTAAACATTTTT--CCGTTGATTTT--TCTCAGCAA-----GTCA---TTTCCATTTGGAATTGATAAGAGA------------AGTTTGCTAT----CTTTTTAC--------------TTTCTTGTTGCATTAATACCTCTTTATGTTACCTGCTCTATA-TTTA-----GTTCTCTCAA---TGACCAA-AACGTCTGCGTCTCTGGATCTCTCTCACACCT-------CATGT-TCATCCCAACCG
s caeRem4.Crem_Contig0   2076428 233 -  4500979 -------TGCATT-------GAGTTTG-AACTGAAAGTAAACACTTCTCTCCTTCCCTTTT-TTCCGAGcga-----ttccattttttc--tttgagttGATAAGAAC------------AAAGTACTATCTTGCTTGATACACGCCAGGTT---TTTCTCCTCTCAATCAAT---TCTCCGCGTCATTTGCTCTCGA-CCTTGGCA-AACCTTCAAC---ACATAAA-AACCactgcgtctct-----tctctctcgttCACTCATACGTTC-TCATCTCGTCGT
i caeRem4.Crem_Contig0  I 140 C 0
s caeSp111.Scaffold527     25983 214 -    90967 -------TCCATC-------GAGTTTC-GGCTGAAAGTAAAcatttct----ttcactttt-ctcccactga----tttct---ttttc--tcctaaaTGATAAG---------------GAGTTACTAT----CTTGATACACtcaaaggt---tttttttgttcaatcgAT---TCAGCACGTCATTTGCTCTCTA-TCTCGACTGGGTCTTCCAA---ACACCAATCATCCCTGCGTCTCT-----CTTATTAGGAC--------TGTTC-TCGTCTTGTTCA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3564121 215 +  4147112 -------TGCATT-------GAGTTTC-GTCTAAATGTAAACATTTCT----TTCACGTTT--TCCCAGTGA-----TTCC---AATTC--TTCGATATGATAAGGGC------------GAATTACTAT----CTTTATACACTCCAGGTT---TACCTttcttccatcaat---tttctgcGTCATCTGCTCTTCAGTCTTGCCATGGCCATCCCGGCCACACAaa----atctgcgtctct-----tctataAGGTC--------AACTC-TCGCCTCATTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   416124 215 +   823664 TTTCGATCGCATA-------AAGTTTCGGACTGAAAGTAAACATTtcg----ttctctttttttctctttggCAAGTTTCG---CACTT--GCCGAAATGATAAGAACCAACAGCGAAATGAGTGACTAT----CTGAATAC----GAGATTAAATTCTCCTACAACGTCAAT---TTTTC-TGTCGGTTTCTTTTTA-AATG-----Ccgcttgcaa---aaaaaaa----------atttct------------------------aactCTTCATCCGAATCG
i caeJap4.Scaffold18194 C 0 I 71
e cb4.chrX              10633386 756 + 21540570 I

a score=-2927.000000
s ce10.chrX              5279319 29 + 17718866 T----CCATGATA-----TCTATTGT-----TGCACAATGAAA
s caeRem4.Crem_Contig0   2076661 34 -  4500979 C----CCACGATGAGATCTCAATTGTGTGACCCC-TAAC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     26197 36 -    90967 T----CCATGGTG-GATATCGACTGT--GACCTCGCAACGAGA
i caeSp111.Scaffold527  C 0 I 66
s caePb3.Scfld02_0       3564336 30 +  4147112 TCGACCCAGGGT----TCTTAATTGT---------CACCGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   416339 71 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I

a score=-1825.000000
s ce10.chrX              5279348 20 + 17718866 ---AAAGACGAAGAACGCGTTCG
s caeRem4.Crem_Contig0   2076695  5 -  4500979 --AATAA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3564366 20 +  4147112 CAAAGAGAC---GAACGGGTCcg
i caePb3.Scfld02_0      C 0 I 41
e caeJap4.Scaffold18194   416339 71 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I
e caeSp111.Scaffold527     26233 66 -    90967 I

a score=893.000000
s ce10.chrX              5279368 16 + 17718866 AATGACCCC-ATGAGCA
s caeRem4.Crem_Contig0   2076700 17 -  4500979 AATGACCCCAATGCGCA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3564386 41 +  4147112 I
e caeJap4.Scaffold18194   416339 71 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I
e caeSp111.Scaffold527     26233 66 -    90967 I

a score=-1115.000000
s ce10.chrX              5279384 24 + 17718866 -------CGATAGGCACACCTATAGCGTGCC--------
s caeRem4.Crem_Contig0   2076717 38 -  4500979 CAATTATCCGCGCGGAGACC-ATAGCTCGTTGCCCTCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3564427 23 +  4147112 -------CCACGAACACACA-ACAGCAGGTC--------
i caePb3.Scfld02_0      I 41 C 0
e caeJap4.Scaffold18194   416339 71 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I
e caeSp111.Scaffold527     26233 66 -    90967 I

a score=-2229.000000
s ce10.chrX              5279408 12 + 17718866 ---ACACACTACAGG
s caeRem4.Crem_Contig0   2076755 15 -  4500979 ACACAATGTCTGCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     26299 11 -    90967 ---CAACATTCCAA-
i caeSp111.Scaffold527  I 66 C 0
s caePb3.Scfld02_0       3564450 11 +  4147112 ---AAACACTCGTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   416339 71 +   823664 I
e cb4.chrX              10633386 756 + 21540570 I

a score=-2374.000000
s ce10.chrX              5279420 8 + 17718866 AGGCGTAC----
s caeRem4.Crem_Contig0   2076770 8 -  4500979 AGATGTCc----
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     26310 4 -    90967 ----GTCC----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3564461 2 +  4147112 ----G--C----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   416410 8 +   823664 ----GTGCAAAC
i caeJap4.Scaffold18194 I 71 C 0
e cb4.chrX              10633386 756 + 21540570 I

a score=31252.000000
s ce10.chrX              5279428 51 + 17718866 AACGTCACTCCGCTATCACGT-AGCGCGCTTTGTTTATCGTAAATCCACAAT
s cb4.chrX              10634142 52 + 21540570 AACGACACTCCGTCATAACGCAGgcgcgcgttgtttagcgTAAATACTCCCT
i cb4.chrX              I 756 I 15
s caeRem4.Crem_Contig0   2076779 51 -  4500979 aacgacactccgaaattacGC-TGTGCGcattgtttaccgtaaatctacact
i caeRem4.Crem_Contig0  I 1 I 28
s caeSp111.Scaffold527     26314 52 -    90967 TACGACACTCCGATATAACGCTATTGCGTGGTGTTTATCGTAAATCGACAAA
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3564463 49 +  4147112 TACAACACTCCGATATCCCGC---CTCGCGCTGTTTAGCGTAAATCGCCACT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   416418 48 +   823664 ---AACGCTCCGAAATTTCGA-ACTGCGCGttgtttaccgtaaatcgacacc
i caeJap4.Scaffold18194 C 0 C 0

a score=-4704.000000
s ce10.chrX              5279479 27 + 17718866 ------------TCTATTTCTCTG---TTTTTAATTTAATAG
s cb4.chrX              10634209 27 + 21540570 --------------TTATTTCTATAGCTTTTTAATGTTGTG-
i cb4.chrX              I 15 C 0
s caeSp111.Scaffold527     26367 27 -    90967 ------------gataattttcag---ttatttgtTTTACTA
i caeSp111.Scaffold527  I 1 I 1
s caePb3.Scfld02_0       3564513 27 +  4147112 ------------TTTATTTTCCCT---TCATTAGTGTTGCTA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   416466 37 +   823664 acttttcacttgcaaaatttcttc---gtttttgttttga--
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2076830 28 -  4500979 I

a score=154739.000000
s ce10.chrX              5279506 734 + 17718866  
s cb4.chrX              10634236 708 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2076858 739 -  4500979  
i caeRem4.Crem_Contig0  I 28 C 0
s caeSp111.Scaffold527     26395 756 -    90967  
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3564540 762 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   416503 726 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1910.000000
s ce10.chrX              5280240 2 + 17718866 GT
s caeRem4.Crem_Contig0   2077597 2 -  4500979 gt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27151 2 -    90967 gt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3565302 2 +  4147112 gt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   417229 2 +   823664 gt
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10634944 0 + 21540570 C

a score=837.000000
s ce10.chrX              5280242 7 + 17718866 AAATTTT-
s caeRem4.Crem_Contig0   2077599 8 -  4500979 GAGTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27153 7 -    90967 gagtttt-
i caeSp111.Scaffold527  C 0 I 45
s caePb3.Scfld02_0       3565304 7 +  4147112 aagttta-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   417231 0 +   823664 C
e cb4.chrX              10634944 0 + 21540570 C

a score=63.000000
s ce10.chrX              5280249 14 + 17718866 ACAAATGTT--TATTT
s caeRem4.Crem_Contig0   2077607 14 -  4500979 atgaatgaa--cattt
i caeRem4.Crem_Contig0  C 0 I 60
s caePb3.Scfld02_0       3565311 14 +  4147112 --gaaaaaagtcatct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   417231  0 +   823664 C
e cb4.chrX              10634944  0 + 21540570 C
e caeSp111.Scaffold527     27160 45 -    90967 I

a score=341.000000
s ce10.chrX              5280263 6 + 17718866 AAAAAA
s caePb3.Scfld02_0       3565325 6 +  4147112 caaaaa
i caePb3.Scfld02_0      C 0 I 923
e caeJap4.Scaffold18194   417231 0 +   823664 C
e cb4.chrX              10634944 0 + 21540570 C
e caeSp111.Scaffold527     27160 45 -    90967 I
e caeRem4.Crem_Contig0   2077621 60 -  4500979 I

a score=0.000000
s ce10.chrX              5280269 480 + 17718866 TCACGTGGTCTTAGAGTTCTCACTCTTGATTACTTCGTAATTCAAATCTTTTGATCAATCAACTGGTTTGTAGTTACAGACAAAAATTTGAAAATAGGTAGCGCCACTGGAGAAATAGTTTTAAACCAATACTATTTTTCTAAACTTTTTTTGGCCAAAAAGAAATTTCTACTTGTTTTTTTTTCTAATCATGCTTGAAATGGTGGTAAAAATCACTCAAAACTTCTAAAGACAGCCTAATGTAACAAATCGTTAACATTTAACAAACATTCGACAGGAATATCTCAAAATTCAAACATGTTTCGTTTTGGAATATTTTCAGTGCTTTGCGGCAAAATCCCCACCGGCGCTGTTTTCTTAATTGAAGAATGAATTAAGAAAAAAAAAAATTCAAACTACACTCTTTTTCAGATCAAATTTTGTATTTGCTTTCAAATCAAAAGTTTCTGACTTCGATAAGTTTTGGCAATTTTTCGCTGC
e caePb3.Scfld02_0       3565331 923 +  4147112 I
e caeJap4.Scaffold18194   417231   0 +   823664 C
e cb4.chrX              10634944   0 + 21540570 C
e caeSp111.Scaffold527     27160  45 -    90967 I
e caeRem4.Crem_Contig0   2077621  60 -  4500979 I

a score=285.000000
s ce10.chrX              5280749 37 + 17718866 AAACACAAATTTT------TTGTGTCAAATCTACTTGAAAATT
s caeJap4.Scaffold18194   417231 43 +   823664 AATTAGAAATTTTAGACCTTTTTAgagaaatttctaaaaattt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3565331 923 +  4147112 I
e cb4.chrX              10634944  0 + 21540570 C
e caeSp111.Scaffold527     27160 45 -    90967 I
e caeRem4.Crem_Contig0   2077621 60 -  4500979 I

a score=-928.000000
s ce10.chrX              5280786 13 + 17718866 CAATCATGCAACG
s caePb3.Scfld02_0       3566254 10 +  4147112 CAATCATATA---
i caePb3.Scfld02_0      I 923 C 0
s caeJap4.Scaffold18194   417274  5 +   823664 gtaTC--------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10634944  0 + 21540570 C
e caeSp111.Scaffold527     27160 45 -    90967 I
e caeRem4.Crem_Contig0   2077621 60 -  4500979 I

a score=-1252.000000
s ce10.chrX              5280799 2 + 17718866 TT-
s caeRem4.Crem_Contig0   2077681 2 -  4500979 TT-
i caeRem4.Crem_Contig0  I 60 C 0
s caePb3.Scfld02_0       3566264 1 +  4147112 -C-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   417279 2 +   823664 -CG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10634944 0 + 21540570 C
e caeSp111.Scaffold527     27160 45 -    90967 I

a score=3928.000000
s ce10.chrX              5280801 6 + 17718866 TTTCAG
s caeRem4.Crem_Contig0   2077683 6 -  4500979 TTACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27205 6 -    90967 TTTCAG
i caeSp111.Scaffold527  I 45 C 0
s caePb3.Scfld02_0       3566265 6 +  4147112 TTTCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   417281 6 +   823664 TTTAAG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10634944 0 + 21540570 C

a score=86355.000000
s ce10.chrX              5280807 117 + 17718866 ATTGACGGTGGCCCAGCTTCCATGAAACAAAACCGAGTGCGGAGTGATTGCAAATGTGTGCTCGTCGACACAATACGAGGACTTCACCTACCACATATTGCCTCAATTCAACGTTAG
s cb4.chrX              10634944 117 + 21540570 atCGATGGCGGTCCGGCATCACTGCAACCAAACCGAAAAACCAGTGATTGTCGTTGCGTGCTTGTGGACACTATCCGAGGATTACATCTACCTCACGTGGCTTCTGTTCAACGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2077689 117 -  4500979 ATTGACGGTGGTCCAGCGGCGATGCAACGAAATCGTCCACCGAGTGATTGTCGGTGTGTGCTAGTAGACACTATTCGTGGATTACACCTGCCCCACGTCGCCTCGATTCAGCGTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27211 117 -    90967 ATTGACGGTGGTCCTGCATCAATGCAACCGAACAGAAACAGAAGTGATTGCAAATGCGTGCTCGTCGACACTATTCGTGGACTACACCTTCCACATGTTGCTTCAATTCAACGTAAG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3566271 117 +  4147112 ATTGACGGTGGCCCCGCCTCAATGCAACCGAATAGAGCCAAAGCTGATTGTAAATGTGTGCTCGTTGACACTATTCGCGGACTTCACCTGCCTCACATCGCCTCGATTCAGCGTATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   417287 117 +   823664 ATTGACGGTGGACCCGCATCAATGCAACCAACAAAGCCAAAAAGGGACTGTAAATGTGTTCTAGTTGATACAATTCGGGGATTTCATTTGCCGCATGTGGCGTCTATTATGTgtaag
i caeJap4.Scaffold18194 C 0 I 33

a score=-14143.000000
s ce10.chrX              5280924 34 + 17718866 -TTT---------TCACGCATATTATGATATACTCACCAAGTCT-
s cb4.chrX              10635061 36 + 21540570 -TTCAATA----TTTCCGAATTTAATGATCTATCCAAAACG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2077806 43 -  4500979 CTCCAATATCCGTTTCCCCAGGCACTCACTCA--Caagataactt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27328 34 -    90967 -TATCTTA-----TTTAGTGTAGGAAAATATATTTCGA-----TC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3566388 39 +  4147112 -TTTTCTA-----CCCGGCTCTCGTTACCTCACTTCAAATCTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   417404 33 +   823664 I

a score=98747.000000
s ce10.chrX              5280958 200 + 17718866 GTTCAGTTTCGCCACACAACGAACGGGAAACAACTGCAGCAATTGGACTGCTCATTCAAATGCTACATGTCATCAGTCGCGTTTTGGAATACTCCTTGCGTTATCCGATTGTGCCTGCAGCATCTTTTTCTAAAGTTTACTGTCCGATAGATGACAAATGGTGAGTAGAAAATTACTTGT--AAAATTGACAAAATAAAAGT--
s cb4.chrX              10635097 183 + 21540570 TTACAGTATCCCCACACAACGAACGAGAAACTACCGCAGCTATCGGACTTTTGGTTCACTTTGTCAATCTCATCAGTAGAATTCTTGGATACTCACTTCGATATCCAGTCTTGCCATATGCGTCGTTCTCAAGAGTGTACAATCCAGTGGAGAATaaattgtgagt-------------tttaaaATATAAAGAAG--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2077849 196 -  4500979 tttcagtcTCCCCACACAATGAAAGAGAAACAACGGCAGCAATTGGACTGCTCATCCAATTCATCAGCATCATCAGCCGAGTTCTTGGATACTCGTTGCGTTATCCAGTCGTACCATACGCGTCGTTTTCACGAGTTTACTGCCCGGTTGAGGATAAATGGTGGGT------TCAAGtattcaaattacaaaaaaaagtacG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27362 201 -    90967 TTCCAGTCTCTCCTCACAACGAAAGAGAAACGACAGCCGCAATTGGAATTCTTATCCATATGATGGAAGTTCTCGGTCGCATACTTGGATATGCATTCCGCTATCCAATCGTGCCGTATTCGTCATCATCTCGAATATACTGCCCAGTAGAGGACAAATGGTTAGT-GAAGTTCAAGTGTTCGTAATGAAAGAAAGTACACA--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3566427 200 +  4147112 TTTCAGTCTCTCCacacaatgaaaaagaaacgacaGCGGCCATCGGATTTCTGATACATCTTATGCAAGTGCTCAGTCGCATTCTCGGATATTCGTTCCGCTATCCCGTGGTGCCGTACTCATCATCCTCACGTATATATTGCCCGGCAGAAGACAAATGGTAAGT--ACTTCcaagtgttcaaaatgtgGGGAAAAGTACA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   417437 203 +   823664 GTTTAGTATCACCTCACAATGAGATCGAAACGACTACTGCGATTGGGCTTCTGATACAAATGCTCAACGCGGTTAGCCGAATTCTTGGATATGCACTTCGTTATCCTGTTTTGCCAAATCCGTCAGCACCACTTATTTACTGTCCGATCGAGGATAAAGTgtgagt-tttattttttttttaatattatagaaaaaaaaaaggt
i caeJap4.Scaffold18194 I 33 I 3847

a score=14864.000000
s ce10.chrX              5281158 83 + 17718866 ACATAGAATAG--ACAAAAATTGAACAAAAAAA----GAGGCATTACG---TT----TGGCATTTTAGTCAATCCATTAATTGGTTCTCTTGTTTC
s cb4.chrX              10635280 55 + 21540570 ----------------------GACAGAAAGAT-TGG--------------TTGGAA----ATTCAAGACAATCTGGAATTTGGTTCACCTGTTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2078045 86 -  4500979 AATTTGAAAAG------cggatgagagaaaaatgtggagGACGGCA-T---TTAGAACGACATTTTAGTCAATCCGGAAGTTGGTTCTCTTGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     27563 90 -    90967 TAGTAGAgtag--gagaaaaaagggaatggGAA-TTGGAGACGTCAGT---TTTTAGTGGCATTTTAGTCAATCCGGAAATTGGTTCTCTCATTTC
i caeSp111.Scaffold527  C 0 I 308
s caePb3.Scfld02_0       3566627 95 +  4147112 AAGTAGGAAAGTAAAGaaggatgagaaaaaaag-taggagGCAGTAGTTAGTTGGAATGGCATTTTAGTCAATCCGGAAATTGGTTCTCCTATTTC
i caePb3.Scfld02_0      C 0 I 693
e caeJap4.Scaffold18194   417640 3847 +   823664 I

a score=-837.000000
s ce10.chrX              5281241 4 + 17718866 TTAA
s cb4.chrX              10635335 4 + 21540570 GCAA
i cb4.chrX              C 0 I 1273
s caeRem4.Crem_Contig0   2078131 2 -  4500979 GT--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3566722 693 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e caeSp111.Scaffold527     27653 308 -    90967 I

a score=569.000000
s ce10.chrX              5281245 57 + 17718866 GTCAGAAAAGACCTGTACTCTTTTGACCAACGTTCTAGAAAAGATGATTTTCTGATT
s caeRem4.Crem_Contig0   2078133 40 -  4500979 ---------------CGCTCGTTTGACAAAC--TCACAAAACTACAATTCTTTAATT
i caeRem4.Crem_Contig0  C 0 I 369
e caePb3.Scfld02_0       3566722 693 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     27653 308 -    90967 I

a score=0.000000
s ce10.chrX              5281302 855 + 17718866  
e caePb3.Scfld02_0       3566722 693 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     27653 308 -    90967 I
e caeRem4.Crem_Contig0   2078173 369 -  4500979 I

a score=728.000000
s ce10.chrX              5282157 31 + 17718866 TTTTCACAGTCTTTTGAAAATTTTCAAAATA
s caeSp111.Scaffold527     27961 27 -    90967 TTTCCATAATCCTTCCAAACTTTTCCA----
i caeSp111.Scaffold527  I 308 C 0
e caePb3.Scfld02_0       3566722 693 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeRem4.Crem_Contig0   2078173 369 -  4500979 I

a score=531.000000
s ce10.chrX              5282188 50 + 17718866 AATTATTTGTCACTTTCACGGA--AGATAAATACAGCGGACACTGC-CAGCAA
s caeSp111.Scaffold527     27988 43 -    90967 --TTATTTGTTGCGTG------TGCGACAAGTACTTGGAGCACCCCAAAGC--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3567415 50 +  4147112 AATGATTCATTGCGTGCTAGGACTAGGCGAGCACTTGGAGCACCCT-CAGC--
i caePb3.Scfld02_0      I 693 C 0
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeRem4.Crem_Contig0   2078173 369 -  4500979 I

a score=16979.000000
s ce10.chrX              5282238 40 + 17718866 TTGCTTGTTTCTCACGGTTCTCAAAAAA-GGATTACA-ACTT
s caeRem4.Crem_Contig0   2078542 40 -  4500979 TTACACATTTCTCACGGTTCTCAAAAAA-GGATTACA-ACTT
i caeRem4.Crem_Contig0  I 369 C 0
s caeSp111.Scaffold527     28031 42 -    90967 CTACACATTTCTCACGGGTCTCAAAAAAGGGATTACATACTT
i caeSp111.Scaffold527  C 0 I 8
s caePb3.Scfld02_0       3567465 40 +  4147112 TTACGCATTTCTCACGGTTCTCAAAAAA-GGATTACA-ACTT
i caePb3.Scfld02_0      C 0 I 177
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=-2343.000000
s ce10.chrX              5282278 32 + 17718866 -------GCTTGGTGCACCACCAGCA-AGTGTATACTTTT---
s caeRem4.Crem_Contig0   2078582 40 -  4500979 TCCGCAGCCTTGAGAAGCGAGCAGCACAGCATAAATTCTT---
i caeRem4.Crem_Contig0  C 0 I 105
s caeSp111.Scaffold527     28081 33 -    90967 -------GCTCGGGAGATG---cttccaaaattatttttttct
i caeSp111.Scaffold527  I 8 C 0
e caePb3.Scfld02_0       3567505 177 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=-914.000000
s ce10.chrX              5282310  57 + 17718866 ACTTGTTTCAGGGGAATCTTAGTTGCTAAATGAGA------------------------------------------------AATAGTACTTTTCTTGTACTAC
s caeSp111.Scaffold527     28114 104 -    90967 ttttgtttcccaGGCatctcatttgaaaaagaagagggacCGTCAAACTCCGTATTCGGACACACGCGCGCAAAATGAAGGGCAACAGTGTatgt-ttgtgtgtg
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3567505 177 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeRem4.Crem_Contig0   2078622 105 -  4500979 I

a score=1068.000000
s ce10.chrX              5282367 36 + 17718866 TATTGAAAATAGTAAAACGCGTA----GAGTAGGATATTA
s caeRem4.Crem_Contig0   2078727 39 -  4500979 TGTTGAGAG-AGAGGGACGCGCGATTCGAACATGTATCTA
i caeRem4.Crem_Contig0  I 105 C 0
s caeSp111.Scaffold527     28218 28 -    90967 tgttga----agaaaaacgcgCA--------ATGTATCTA
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3567505 177 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=23578.000000
s ce10.chrX              5282403 259 + 17718866 TGAGCAGCTTGCAAGGTGTGTT---------TCTTATTCAAAACGAAATATAT---AATGAAGGCTACTTGCTTCGACAAACATATGCGAGAAATACACCAGGACAAGTGGGGA-GTCGCCGGAAAATGTTTGTGAAGAAATGCCCGCCAAAATTAAAAATGGTACAATGGAGTAGGCAAGTGGTGCCAGCCAGTAATCAGGGAGGGCGCCCGTGTGTGTGTGTG-------TGGCCCCACTGATTTGTGATTGGTGTCAGAGAGTTAGA--GAAGAAGAG
s caeRem4.Crem_Contig0   2078766 242 -  4500979 TGAGCCGAATGGAAGGTGAGATGAGAGAGtttcttattcaaaaagaaac----ataaatGAAGGCTACTACCCTCTGCAAACAAATGCGA-----ACG-GAGGGAATTTTAGGC--------CCAAAAG--TATGAGGATATAC--------GACGAATATGGCGTgggagggcgcagagaaggtGAGGGCTAAGCGCCAGGAGAGG---------GAGATAGAGCGCAGGTGCACTCTAGTGATAGGTGATTGGTGG--GAGagaaagatggaaaaagag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     28246 223 -    90967 TGAGCTGCGTGCAAGGTGAGATGAGTGAG--TCTTATTGAAATAGAAACATATATAAATGACGGTCACTAGCTTTTGCAAACATACgcaa-----atg-aagaaagtagttgga-gaaatgagagaagg--TATGAATACAT--------------------ATTCAAGGGCGT---GAG----TGCGCGccaaaaagagaggaagc---------TAGTAAAGg-------tcgctctattgataagtGATTGGCGT--GAGATTAAGA--GAACGAGAG
i caeSp111.Scaffold527  C 0 I 21
s caePb3.Scfld02_0       3567682 239 +  4147112 TGAGCCGCGTGCTAGGTGAGATGA--AGG--GCCTATTGAAATAGAAACATATATAAATGAGGGTCACTAGCTTTTGTAAACACTCACGA-----ACGTAAGAAAGTGGGAGGAGGAAACGGGAGAAGG--TATgaagatattt--------gaaaatgaggacTTGGGTGTAT---GAGTTGATGCGCGCCAAACACCAGGAAAGC---------GAGAGACGA-------GCGCCCTATTGATAAGCGATTGGTGT--Gaggtgaaga--gaaaaagag
i caePb3.Scfld02_0      I 177 C 0
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=206.000000
s ce10.chrX              5282662 15 + 17718866 TCACACACACATTTC
s caeRem4.Crem_Contig0   2079008 12 -  4500979 ---CGTGCTCGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3567921 15 +  4147112 gagaatgcTCATGCC
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     28469 21 -    90967 I

a score=17430.000000
s ce10.chrX              5282677  97 + 17718866 GATGGCTATGTATG-GCCT-------TGCAAGTTGA-AACGAT------AGATACACTGTT--------GGCGAACAGAGCAAACATACTTTTTTCTGTGGCAACATCTGACTGAATATC
s caeRem4.Crem_Contig0   2079020  90 -  4500979 --GCACGAAGA----ACCT-------TGTAGGTAGGTGGCGAG------GAATACACTTTT--------GGCGAACTTGGTAAATAGAGTTTT---TGTGGCAACATTTGACTGAATATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     28490 117 -    90967 AAGGACTATGCATGTGTATCGTTCTATGCGAGTAGGTGACGAGCTAGTCGAATACACTATTTTTTGGGGGGAGAACTGAGCAAACAGAGTTTT---TGTGGCAACATCTGACTGAATATC
i caeSp111.Scaffold527  I 21 I 568
s caePb3.Scfld02_0       3567940 101 +  4147112 GTAGACTAGGA----GCCTCGTT-TGTGTAAGTAGGTGACGAGGTAGG-GAATACACTTTTT-------GGCGAACTGAGCAAATAGAGTTTT---TGTGCCATCATCTGACTGAAT---
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=1029.000000
s ce10.chrX              5282774 30 + 17718866 TTCCCCTTGCACAC----TTTCACAGTGTGTTAT
s caeRem4.Crem_Contig0   2079110 29 -  4500979 -----GTGAAACACACTTTTTCCTCTTGAGTTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3568041 34 +  4147112 TTATCGTGAAACACGCTTTTTTGCATTGTGTCGT
i caePb3.Scfld02_0      C 0 I 1051
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     28607 568 -    90967 I

a score=179.000000
s ce10.chrX              5282804  98 + 17718866 TCAAGAGAGTTTAGTGGTGGTTTTTGTTGCGAA---TGGTT-TAAAAAATTAGATGTATCGCGTTTCTCTTCTA-------------------AAAAGTGG---------------------TAT--------ATCCCTAATGGGAAATA
s caeRem4.Crem_Contig0   2079139 142 -  4500979 TCGAGAGTGTC--------ATTTTTGTGGCGAAACATGTTTATCGTAAATAATGCACAATATGTTTCTCTTCTAGAATTTCAttgtcaacaaaaaaaatgaatttccagATTATTCGGAATATATGCTTTTTGATTCTTATTGGAGAATA
i caeRem4.Crem_Contig0  C 0 I 40
e caePb3.Scfld02_0       3568075 1051 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     28607 568 -    90967 I

a score=0.000000
s ce10.chrX              5282902 36 + 17718866 CAAGGCGGTGTGGTAAAAAAACCGAAAAATCTATGG
e caePb3.Scfld02_0       3568075 1051 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     28607 568 -    90967 I
e caeRem4.Crem_Contig0   2079281 40 -  4500979 I

a score=-3914.000000
s ce10.chrX              5282938  86 + 17718866 TGATACAATGCTTAAAT------------------ATCATGAGAAC------------------------ATTTCTTTATTTGGAAAA-------------------------------TGTTTATTTCGA------GCCAAAAAGTGGTG-------------------------------------------------------AAAAC----------------GGAGTTTAC------------
s caeRem4.Crem_Contig0   2079321 248 -  4500979 TgaaatgattctgaaattggGTTCTGACGCTTTATATATTGAGAATGGCAAAAAGCATGTGATAGCCTTTATCCCACTTTTTGGAGGAAACATGATCATTCAAACAGATTTTCATTCCCTATAGATTTCGGTTTACTGCTAATCAATGGTGTCTCAGCAATTTGTCTACTCAACTGATAgacatttaaaaatataaatgtcTGAACAAAACTTTCATGTCTCATGTTAGACTTCACTGGGTATGACTT
i caeRem4.Crem_Contig0  I 40 C 0
e caePb3.Scfld02_0       3568075 1051 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I
e caeSp111.Scaffold527     28607 568 -    90967 I

a score=1214.000000
s ce10.chrX              5283024 10 + 17718866 AAATGTTAGG
s caeRem4.Crem_Contig0   2079569 10 -  4500979 AAACGTTCAA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold527     29175 10 -    90967 AATCGTTCGA
i caeSp111.Scaffold527  I 568 C 0
e caePb3.Scfld02_0       3568075 1051 +  4147112 I
e caeJap4.Scaffold18194   417640 3847 +   823664 I
e cb4.chrX              10635339 1273 + 21540570 I

a score=3654.000000
s ce10.chrX              5283034 29 + 17718866 ATCCT--TTCAAACTAACTAATGCAAT-TAAT-----
s cb4.chrX              10636612 25 + 21540570 ATCTC--TTTAAACCAAC-----CAGTCCTTT-----
i cb4.chrX              I 1273 C 0
s caeRem4.Crem_Contig0   2079585 26 -  4500979 ATCCCCTTTTAAACCAAC-----CAGT-TTTT-----
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold527     29185 26 -    90967 AAACT--TATAAACTAAC-----CAGT-TGTTGC---
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3569126 29 +  4147112 ATCCT--TCTCAACCAac-----cagt-tttttcatt
i caePb3.Scfld02_0      I 1051 C 0
e caeJap4.Scaffold18194   417640 3847 +   823664 I

a score=145877.000000
s ce10.chrX              5283063 507 + 17718866  
s cb4.chrX              10636637 376 + 21540570  
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   2079611 396 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     29211 375 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3569155 383 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   421487 357 +   823664  
i caeJap4.Scaffold18194 I 3847 C 0

a score=-3495.000000
s ce10.chrX              5283570 39 + 17718866 CCTACAG-ACCTACCGGTACCATGATGA--TATCCATGTTGA
s caeRem4.Crem_Contig0   2080007 35 -  4500979 -CTCCGGAAT---TCAAGTCGATAATTC---ATTAATTATAC
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold527     29586 36 -    90967 CCTACGG-AC---CCGGTTACATAATTC--TGTTCATTAAAT
i caeSp111.Scaffold527  C 0 I 6
s caePb3.Scfld02_0       3569538 36 +  4147112 CCTACGG-AT---ACAGATTGATAATac--tgccaatttttt
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   421844 34 +   823664 --TGCAA-AA---CCTGTACCTTATTAATTTAtgaattat--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10637013 30 + 21540570 I

a score=-18849.000000
s ce10.chrX              5283609 47 + 17718866 CTTACTGCACACATTTCATG--------TTGCATTGT--TTGGGTTTATTTA-------------------TTTTC---
s cb4.chrX              10637043 40 + 21540570 -ttccctgtgcattttgaat--------taat-ttat--tttt-----tgaa-------------------tattt---
i cb4.chrX              I 30 I 6
s caeRem4.Crem_Contig0   2080047 44 -  4500979 -TCTCCCGTAC--TCTCACT--------TAATATTAT--TCGTGTCAATTTA-------------------TATTT---
i caeRem4.Crem_Contig0  I 5 I 38
s caeSp111.Scaffold527     29628 54 -    90967 TTCACTTGATTTCTGTCgtg--------ttttattat--ttat-----tttc-------ggTTCTCAAAGTTATTT---
i caeSp111.Scaffold527  I 6 I 2
s caePb3.Scfld02_0       3569582 71 +  4147112 ttcaCttatattattttatgattactattattattattgttat-----tatcaCAGCTTGGTTGTTTTCCTTACTC---
i caePb3.Scfld02_0      I 8 I 2
s caeJap4.Scaffold18194   421878 47 +   823664 ---------------ttaat--------tttttctgt--ttct-----ttcc--ccctcgaagcttcagtttatttttc
i caeJap4.Scaffold18194 C 0 C 0

a score=-1442.000000
s ce10.chrX              5283656 6 + 17718866 AGTGTT
s cb4.chrX              10637089 3 + 21540570 GGT---
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold527     29684 6 -    90967 AACGTA
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3569655 6 +  4147112 GGTGTC
i caePb3.Scfld02_0      I 2 I 52
s caeJap4.Scaffold18194   421925 6 +   823664 actttc
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2080091 38 -  4500979 I

a score=-2568.000000
s ce10.chrX              5283662 13 + 17718866 TGAAAAAAAAACG
s cb4.chrX              10637092 13 + 21540570 Tgtcaagaaaaac
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     29690 10 -    90967 ---TAATTGGTAT
i caeSp111.Scaffold527  C 0 I 3
s caeJap4.Scaffold18194   421931  5 +   823664 cggta--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3569661 52 +  4147112 I
e caeRem4.Crem_Contig0   2080091 38 -  4500979 I

a score=-8026.000000
s ce10.chrX              5283675 25 + 17718866 AATTT--------ATTTTT-TG-TATTGTTTTTAT------
s cb4.chrX              10637105 32 + 21540570 aatttcggTTAAAAGTCATATG-TAT--ATTCCAC------
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   2080129 26 -  4500979 aattt--------attcTGGTG-TATtggttcaat------
i caeRem4.Crem_Contig0  I 38 I 7
s caeSp111.Scaffold527     29703 30 -    90967 -----AAATTATTATTCTTGTACTAACGCTTTTAT------
i caeSp111.Scaffold527  I 3 I 4
s caeJap4.Scaffold18194   421936 13 +   823664 ----------------------------ttttcatatcgaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3569661 52 +  4147112 I

a score=120478.000000
s ce10.chrX              5283700 380 + 17718866  
s cb4.chrX              10637146 444 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2080162 445 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold527     29737 419 -    90967  
i caeSp111.Scaffold527  I 4 C 0
s caePb3.Scfld02_0       3569713 378 +  4147112  
i caePb3.Scfld02_0      I 52 C 0
s caeJap4.Scaffold18194   421949 428 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=6212.000000
s ce10.chrX              5284080 8 + 17718866 TACCGGTA
s cb4.chrX              10637590 8 + 21540570 TGCCGGTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     30156 8 -    90967 TGCCGGTa
i caeSp111.Scaffold527  C 0 I 34
s caePb3.Scfld02_0       3570091 8 +  4147112 TGCCGGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   422377 8 +   823664 TACCGGTG
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2080607 0 -  4500979 C

a score=753.000000
s ce10.chrX              5284088 2 + 17718866 AG
s cb4.chrX              10637598 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3570099 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18194   422385 2 +   823664 AG
i caeJap4.Scaffold18194 C 0 I 548
e caeSp111.Scaffold527     30164 34 -    90967 I
e caeRem4.Crem_Contig0   2080607 0 -  4500979 C

a score=91.000000
s ce10.chrX              5284090 1 + 17718866 T
s cb4.chrX              10637600 1 + 21540570 T
i cb4.chrX              C 0 I 4
e caePb3.Scfld02_0       3570101 17 +  4147112 I
e caeJap4.Scaffold18194   422387 548 +   823664 I
e caeSp111.Scaffold527     30164 34 -    90967 I
e caeRem4.Crem_Contig0   2080607 0 -  4500979 C

a score=0.000000
s ce10.chrX              5284091 1787 + 17718866  
e caePb3.Scfld02_0       3570101   17 +  4147112 I
e caeJap4.Scaffold18194   422387  548 +   823664 I
e cb4.chrX              10637601    4 + 21540570 I
e caeSp111.Scaffold527     30164   34 -    90967 I
e caeRem4.Crem_Contig0   2080607    0 -  4500979 C

a score=424.000000
s ce10.chrX              5285878 6 + 17718866 tttaaA
s caePb3.Scfld02_0       3570118 6 +  4147112 ttcaaa
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18194   422387 548 +   823664 I
e cb4.chrX              10637601 4 + 21540570 I
e caeSp111.Scaffold527     30164 34 -    90967 I
e caeRem4.Crem_Contig0   2080607 0 -  4500979 C

a score=-932.000000
s ce10.chrX              5285884 21 + 17718866 ATTACAAAATT----AGTTCATACA-----
s cb4.chrX              10637605 30 + 21540570 ATTCCAAAATTGATGAGTTCttattcaaca
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_0       3570124 14 +  4147112 aacacaaaatt-atg---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   422387 548 +   823664 I
e caeSp111.Scaffold527     30164 34 -    90967 I
e caeRem4.Crem_Contig0   2080607  0 -  4500979 C

a score=-780.000000
s ce10.chrX              5285905 3 + 17718866 TTT-
s cb4.chrX              10637635 3 + 21540570 att-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     30198 3 -    90967 -ttt
i caeSp111.Scaffold527  I 34 C 0
s caePb3.Scfld02_0       3570138 3 +  4147112 -ttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   422387 548 +   823664 I
e caeRem4.Crem_Contig0   2080607 0 -  4500979 C

a score=180050.000000
s ce10.chrX              5285908 335 + 17718866  
s cb4.chrX              10637638 336 + 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   2080607 331 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold527     30201 332 -    90967  
i caeSp111.Scaffold527  C 0 I 22
s caePb3.Scfld02_0       3570141 345 +  4147112  
i caePb3.Scfld02_0      C 0 I 184
s caeJap4.Scaffold18194   422935 473 +   823664  
i caeJap4.Scaffold18194 I 548 C 0

a score=0.000000
s ce10.chrX              5286243 29 + 17718866 TTGTTGTATAGGGTTTTAAATTCTTTTTT
e caePb3.Scfld02_0       3570486 184 +  4147112 I
e caeJap4.Scaffold18194   423408  0 +   823664 C
e cb4.chrX              10637974 38 + 21540570 I
e caeSp111.Scaffold527     30533 22 -    90967 I
e caeRem4.Crem_Contig0   2080938 29 -  4500979 I

a score=97412.000000
s ce10.chrX              5286272 115 + 17718866 ATTTTCCAGAGTCTGTACTCTGGATCCGAAAGAGATGGTTTTATCCACTGTTGTTCTTGGAATGAGAATCTCATTGCGTTCACAAATGATACCGGAACAAGAGTCTACGAAAGGT
s cb4.chrX              10638012 115 + 21540570 aattttcagaatttgtatTCTGGTTCTGAGCGAGATGGCTTTATCCATTGCTGCTCTTGGAACGATAATCTTATTGCATTCACCAATGACACTGGAACACGGGTTTATGAAAGGT
i cb4.chrX              I 38 I 37
s caeRem4.Crem_Contig0   2080967 112 -  4500979 ---ttttagaaCTTGTATTCCGGCTCGGAAAGAGATGGATTCATACATTGCTGCTCCTGGAACGATAATTTTATCGCGTTCACAAATGACACTGGCACGAGGGTTTACGAGAGGT
i caeRem4.Crem_Contig0  I 29 I 3
s caeSp111.Scaffold527     30555 115 -    90967 atttttcagaatttgtaTACTGGATCAGAAAGAGACGGATTCATCCATGGCTGTTCTTGGAATGATAATCTTATTGCCTTCACTAACGATACAGGAACAAGAGTTTATGAAAGGT
i caeSp111.Scaffold527  I 22 C 0
s caePb3.Scfld02_0       3570670 111 +  4147112 ATATTTCAGACTCTCTACTCCGGCTCAGAACGAGATGGCTTCATTCACTGTTGTTCTTGGAATGACAACTTCATTGCTTTCACCAATGACACAGGAACACGAGTTTATGAA----
i caePb3.Scfld02_0      I 184 C 0
s caeJap4.Scaffold18194   423408 110 +   823664 -----CAGAAACTTGTACAGTGGATCGGAACGAGATGGATTCATAAATTGCTGTTCCTGGAATGATAATCTCATCGCGTTCACTAATGATACTGGCACACGGGTTTATGAGAGGT
i caeJap4.Scaffold18194 C 0 I 2

a score=-7199.000000
s ce10.chrX              5286387 33 + 17718866 --------ACC--CTATTTTGGATTTATTTTTTAATTGCTATA
s caeRem4.Crem_Contig0   2081082 29 -  4500979 --------AC------TTTAAAATTCCACGTCTCACTCCTCTG
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold527     30670 27 -    90967 ----------------ATTGATCAAGAGGTTTGCAATCcacca
i caeSp111.Scaffold527  C 0 I 2
s caeJap4.Scaffold18194   423520 42 +   823664 GTCTTATCACCGACAAATACATATTTATAtataaaatgcaat-
i caeJap4.Scaffold18194 I 2 C 0
e caePb3.Scfld02_0       3570781  0 +  4147112 C
e cb4.chrX              10638127 37 + 21540570 I

a score=284048.000000
s ce10.chrX              5286420 503 + 17718866  
s cb4.chrX              10638164 489 + 21540570  
i cb4.chrX              I 37 I 37
s caeRem4.Crem_Contig0   2081111 500 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold527     30699 495 -    90967  
i caeSp111.Scaffold527  I 2 I 33
s caePb3.Scfld02_0       3570781 482 +  4147112  
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold18194   423562 509 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5286923 41 + 17718866 GTGGGAAGCATGCAGATCATACTAAACGCTTAAAAAGTGAA
e caePb3.Scfld02_0       3571263 36 +  4147112 I
e caeJap4.Scaffold18194   424071  0 +   823664 C
e cb4.chrX              10638653 37 + 21540570 I
e caeSp111.Scaffold527     31194 33 -    90967 I
e caeRem4.Crem_Contig0   2081611 37 -  4500979 I

a score=148174.000000
s ce10.chrX              5286964 205 + 17718866 ATTTCCAGCGTCAAACTCTCCAACCATACTTTGCCATACATGATTCACGGTCTTGGAATTCCTTACCTTGCCACATACTTTATATTGACAACGAAGCACATTATTATGGCGGTACCATATGGCCCGGAAGACGGCATTCGTTGGAGATTGAAGTATAAACTCTACGATGAAGCGTTGGATATGGCAAAGCACAATGTACGG-------TTTG
s cb4.chrX              10638690 210 + 21540570 atttccagtATCCGACTATCAACGCACACCCTACCATATATGATTCATGGACTTGGCATTCCATACCTTTCCACTTATTTCATTTTGACGACAAAACAAATCATCATGGCTGTTCCGTACGGTCCGGAAGATGGAATCAAATGGCGGCTACAGTATAAACTGTACACCGAGGCATTCGAAATGGCAAAAGAACATGttagt--ggttttttt
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   2081648 210 -  4500979 gttttcagtatCCGCCTCTCTTCGCACACTCTACCATATATGATTCATGGACTTGGAATTCCCTACCTTGCCACATACTTCATATTGACTACGAAGCAAATTATCATAGCCGTTCCATACGGTCCGGAAGACGGAATTCGGTGGAGACTACAATACAAACTGTACGATGAGGCATTTGAAATGGCAAAGCATCATGTTAGT--AATCTTATT
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold527     31227 210 -    90967 atTTTCAGTGTTCGACTCTCTAAACACACGCTGCCTTATATGATTCACGGAGTCGGTATTCCTTACCTGGGTACATACTTTATACTGACCACGAAACAAATAATTATGGCCGTTCCGTATGGTCCAGAAGATGGTATTCGTTGGAGACTGAAATACAATCTATACGACGAAGCATTTGAAATGGCAAAACATCATGTTCGT--TTTTgtatt
i caeSp111.Scaffold527  I 33 C 0
s caePb3.Scfld02_0       3571299 212 +  4147112 ATTTCCAGTATCCGGCTCTCGCATCACACCTTACCCTATATGATTCATGGACTCGGAATTCCTTACCTTGATACATACTTCATATTGACCACGAAGCAAATCATTCTGGCAGTTCCGTATGGACCAGTGGACAATATCAAATGGAAGTTGAAGTATAAACTTTACGAAGAAGCGTTTGAAACGGCGAAAATTTATGTGAGTAACACTCTATT
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18194   424071 198 +   823664 --------TGTGAAACTCTCGCCGCATACGCTACCATCGATGATACAAGGGCTAGGAATTCCGTATCTGAGAACGTATTTTATATTGACCAATAAGAATATTATAATGGCTGTTCCATATGGACCGGAAGACGGTATACGGTGGCGACTGAAGTATAATCTCTACGATGAGGCGTTTGACATGGCTAAACATCACGTAAGT--GTTTG----
i caeJap4.Scaffold18194 C 0 I 2463

a score=-2287.000000
s ce10.chrX              5287169  9 + 17718866 ATTTT-----C--AG-A
s cb4.chrX              10638900 12 + 21540570 ttgtt-----cagtgAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2081858 10 -  4500979 GTTTT-----C--TGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     31437  9 -    90967 gtttt-----c--tg-a
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571511 14 +  4147112 GTTTTGACAAC--TG-T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   424269 2463 +   823664 I

a score=107161.000000
s ce10.chrX              5287178 224 + 17718866 TATGATTTTTAA---------A--AACTAGTTTATCA-----------------ATTCAGGCCGACTTACTCTCCAAAACTGATCTCAGTCCGAAGAAAGTGGGGAGGATGATTATCGAGGGATACCTGACTGGAAAACGAGCAAGAGCAGCTGCTTCCCGCCTTCCATTGATCTGTGGAGAATGCAAGGAGGAGTGGGAATGGGCAGTGAATCAGTTTGAGGAAGTCAAATTATGCACTCTACTAGCGGAG
s cb4.chrX              10638912 240 + 21540570 GACTACACTCTAATGACGAATC--ATCTAAACTAAAACAATAAA----------TTTCAGGCGGACATGCTTGCAAAAACAGACGTGAGCCCCAAAAAAGTGGGGCGAAAGATCATCGAGGGGTACTTAGAAAGTAAAAAGGCTAGAGTAGCGGCTTCTTGGCTTTCTTCTATCTGTGGAGACTGCAAAGAGGAGTGGGAGTGGGCTGTGGATAGATTTCACGACGCTAAAATGTCTACATTGTTGGGTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2081868 245 -  4500979 GACTGTACATTAGTCATGAA-c--aacaaaatatgaataattaataatat----tttcaggcCGATCTTCTCGTTAAAACTGATTTGAGTCAGAAGAGCGTAGGGAGAAAGATCATTGAAGGGTATTTGAGCAACAAGCAAGCAAGAGTCGCAGCTTCGTACCTACCACATATCTGCGGAGATTGCAAAGAAGAATGGGAATGGGCAGTAGGACAGTTCCATGACGCTAAAATGTCGACACTCCTGGCGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     31446 244 -    90967 aacagttcCTGACTCAT----C--AGATGGACGAACATAGGAAATTGTAC--TTTTTCAGGCGGAACTTCTTGCCAAAACAGAATTGAGCCAGCAATGTGTCGGACGTACCATTATTGAAGGATATTTGGATAGTAAAAGAGCAAGAGCCGCCGCCTCTCGACTTCCACTCATATGTggagaatcaaaagaagaatgggAATGGGCAGTCGATCGGTTCGAAGAAGCCAAGATGTGCACTCTTCTGGCAGAA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571525 240 +  4147112 GACAGTGTCTGACTCAT----CGTAGCTGGTT--------gatattgtttcattttccaggcCGATCTCCTCGCAAAAACAGAACTGAGCCAGAAGAAAGTGGGAAGACTGATAATAGAAGGATATTTGGATGGAAAACGAGCAAGAGCGGCTGCTTACTGGCTCCCAAAGATTTGTGGAGAATCAAAGGAAGAATGGGAATGGGCTGTGGACAAGTTCGAAGAAGCCAAAGTGTGCACTCTTCTCGCCGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   426732 227 +   823664 ------------------------tgtTAATTCTAAACA-TTAACATTTCAAATATTCAGGCTGACCTTTTGGCCAAAACCGAGCACAGTCAAATGAATGTGGGACGAATGATAATCGGAGGATATCTTGCTGGAAAACGCGCAAAAGCGGCCGCATCCCGACTTCCTTACATTTGTGGAGAAAGCAAGGAAGAGTGGGAATGGGCTTCCGAACAGTTTGAAAAAGTCAGACTGTGCACTCTTCTTGCCGAC
i caeJap4.Scaffold18194 I 2463 C 0

a score=4310.000000
s ce10.chrX              5287402 9 + 17718866 GTGATTTTT
s cb4.chrX              10639152 9 + 21540570 GTgcgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2082113 9 -  4500979 GTATGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     31690 9 -    90967 GTAAGTTAT
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3571765 9 +  4147112 GTAGGTTTT
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18194   426959 0 +   823664 C

a score=-239.000000
s ce10.chrX              5287411 2 + 17718866 AA
s cb4.chrX              10639161 2 + 21540570 ga
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   2082122 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3571774 30 +  4147112 I
e caeJap4.Scaffold18194   426959 0 +   823664 C
e caeSp111.Scaffold527     31699 1 -    90967 I

a score=191.000000
s ce10.chrX              5287413 2 + 17718866 CT
s caeRem4.Crem_Contig0   2082124 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 I 24
e caePb3.Scfld02_0       3571774 30 +  4147112 I
e caeJap4.Scaffold18194   426959 0 +   823664 C
e cb4.chrX              10639163 29 + 21540570 I
e caeSp111.Scaffold527     31699 1 -    90967 I

a score=0.000000
s ce10.chrX              5287415 466 + 17718866 TTTTGACTATTGAAAAAACTGCAATGCTGGAATAGCTCAGATGGTTGCCGCTATAAATCACGAGGTTGCAAGTTCAAGTTCTCCCtagactttccaagtaggtgctgaaacacctgtcgagcccgtcttgcggcgacccctacctgcctaacgtagcgagcagcgccttcggtataggaacccgataagtttcggttgtcccgacagaTTTAGGGTTCggcgtaaggtggacaggtttaggcagcgccagacactgaaaacgcgtctgtcttttatgaaTGGCATagtcctgcccttttcaagtgtatacagtcttaattggaaagtggagctattcactgcattagtctccggcccggacgtggtttaaactagaggactagagctcaatggaagcatcaccagacagaatatctgacttctagatccgcaatgcatagaccttgaggaatggatcgtgctttaa
e caePb3.Scfld02_0       3571774  30 +  4147112 I
e caeJap4.Scaffold18194   426959   0 +   823664 C
e cb4.chrX              10639163  29 + 21540570 I
e caeSp111.Scaffold527     31699   1 -    90967 I
e caeRem4.Crem_Contig0   2082126  24 -  4500979 I

a score=458.000000
s ce10.chrX              5287881 31 + 17718866 tattttCAGTCCGTTGTATGTAGTTTTTTTC
s caeSp111.Scaffold527     31700 28 -    90967 TAGTTTCAGACCCC---ATCTAATTCATTTA
i caeSp111.Scaffold527  I 1 C 0
e caePb3.Scfld02_0       3571774 30 +  4147112 I
e caeJap4.Scaffold18194   426959  0 +   823664 C
e cb4.chrX              10639163 29 + 21540570 I
e caeRem4.Crem_Contig0   2082126 24 -  4500979 I

a score=273.000000
s ce10.chrX              5287912 1 + 17718866 A
s caeSp111.Scaffold527     31728 1 -    90967 A
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571804 1 +  4147112 A
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18194   426959 0 +   823664 C
e cb4.chrX              10639163 29 + 21540570 I
e caeRem4.Crem_Contig0   2082126 24 -  4500979 I

a score=67.000000
s ce10.chrX              5287913 1 + 17718866 A
s caeRem4.Crem_Contig0   2082150 1 -  4500979 A
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold527     31729 1 -    90967 G
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571805 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   426959 0 +   823664 C
e cb4.chrX              10639163 29 + 21540570 I

a score=3659.000000
s ce10.chrX              5287914 6 + 17718866 TTTCAG
s cb4.chrX              10639192 6 + 21540570 ttttag
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   2082151 6 -  4500979 TTTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     31730 6 -    90967 TTCAAG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571806 6 +  4147112 TTCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   426959 0 +   823664 C

a score=546615.000000
s ce10.chrX              5287920 803 + 17718866  
s cb4.chrX              10639198 756 + 21540570  
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   2082157 811 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     31736 797 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3571812 802 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   426959 833 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-927.000000
s ce10.chrX              5288723 6 + 17718866 ATTCAT
s caeRem4.Crem_Contig0   2082968 3 -  4500979 ---aat
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold527     32533 1 -    90967 -----T
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3572614 2 +  4147112 ----GT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   427792 6 +   823664 atccat
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10639954 46 + 21540570 I

a score=-2607.000000
s ce10.chrX              5288729 17 + 17718866 TTTATCAACTGCTTC-TA--------
s caeSp111.Scaffold527     32535 10 -    90967 --------TTGCTTCATT--------
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3572617  9 +  4147112 --------TTTCCTC-TG--------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   427798 17 +   823664 --------ttttatt-tgaaaaagta
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10639954 46 + 21540570 I
e caeRem4.Crem_Contig0   2082971 27 -  4500979 I

a score=-566.000000
s ce10.chrX              5288746 16 + 17718866 ATGTTTAATTAATTCT
s caeRem4.Crem_Contig0   2082998  2 -  4500979 --------------AT
i caeRem4.Crem_Contig0  I 27 I 13
s caeSp111.Scaffold527     32545 16 -    90967 ATATTTATCAAAATAT
i caeSp111.Scaffold527  C 0 I 8
s caePb3.Scfld02_0       3572626 16 +  4147112 GGAATTATTTAATGAT
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold18194   427815 16 +   823664 AGGCTGaataaatttc
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10639954 46 + 21540570 I

a score=172727.000000
s ce10.chrX              5288762 220 + 17718866 AGATCAAAATGACCCCGATTTATGGATTCACCTTCTAGGAGTAGTTGCCGAGTTTCCTGCTCATTTTTCGCAGCTTATCATTGAAGCGTCAAACTGCCTCGATCCTCTCCTGATTATGGACAAACTACCGGACGATTCGGATATTCCTAACTTGAGTGAAGCGCTCGACAAACTTCTCGTTGACTATACAAATCATGCAGAGCTTCAGCAATGTACGTTT----------------
s cb4.chrX              10640000 218 + 21540570 AGATCAAAACGACCGTGACCTTTGGATTCATCTTCTCGAGGTGGTGGCAGACTTCCCGACCCACTTCTCACAGCTGATCATTGAAGCATCCAACTGTCTGGATCCAATTCTGATTATGGACAAACTCCCAGACGACGTAGACATCCCAAATTTGAGTGAAGCGTTGGAGAAGCTTCTGACAGATTTTACGAATTATGTCGAACTTCAGCagtgtaagt------------------
i cb4.chrX              I 46 C 0
s caeRem4.Crem_Contig0   2083013 220 -  4500979 AGATCAAAACGACCCTGACTTGTGGGTTCATCTTCTTGGTGTGGTTGCAGAGTTCCCTGCTCACTTCTCACAATTGATTATCGAAGCGTCCAATTGTCTCGATCCACTTCTGATTATGGATAAACTTCCAGATGACGCCGACATTCCAAACTTGAGTGAAGCATTGGAAAAACTCTTGATGGATTATACTAACCACGCGgatcttcaaaaatgttagtta----------------
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold527     32569 214 -    90967 AGATCAAAATGATTCCGATTTGTGGGTCCACTTACTCGGAGTAGTAACAGAGTTTCCCGCTCATTTCTCTCAACTGATTATTGAAGCCTCAAACTGCCTTGACCCACTTGTCATCATGGCTAAACTGCCGGAAAATGTGGATATTCCCAATTTAAGTGATGCATTGGATAAGCTTTTGATGGATGATTCAAACTATGTGGAGCTTCAACAATGT----------------------
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3572653 220 +  4147112 AGATCAGAACGACCCGGATCTCTGGATTCATTTGCTTGGAGTGGTTGCAGAATTCCCTTCACATTTCTCACAACTGATAATAGAAGCATCCAACTGCTTGGATCCACTTCTGATTATGGATAAATTACCAATCGATGTGGATATTCCGAATTTGAGTGAAGCGTTGGAAAAGCTTTTGACAGATTATACAAATCATGCAGAGTTGAAGCAATGTAAGTTT----------------
i caePb3.Scfld02_0      I 11 I 22
s caeJap4.Scaffold18194   427831 236 +   823664 agatcaaaacgATCCGGATCTCTGGGTTCACCTTCTCGAAGTCGTTGCAGAATTCCCAGCGCACTTTGCCCAACTTATCATTGAGGCTTCCAACTGCCTGGATCCCCTTTTGATTATGGAAAAGCTGCCGAACAACACGGATATTCCAGATTTGAGTGACGCGCTAGAGAAACTTTTGCTCGATTACACGAATTACGCTGAGCTTCAGCAATGTGAGATaaacttccttttttttt
i caeJap4.Scaffold18194 C 0 C 0

a score=-33229.000000
s ce10.chrX              5288982 153 + 17718866 GGATATTTTTACTTTGCTGGCGGTTTAAAAGTGGAACATCG---CTAGTGGGAAATTATTAAA-------AATGGTTCTTGAATGTCATAGTGAAAATTGCCAATAATGTTTAAATTTTTTACAGTTGAC---AAGTTCTTTGCGAGAGGTGGAAACTTGATATGC
s cb4.chrX              10640218  50 + 21540570 -------------------------------------------------------tttttttt-------cgtttttcgtttttctttttatgaaatttgatCATACTGTTT------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2083233  39 -  4500979 -------------------------taa------------------------aaattattttt-------gaccTGTCATCAT-----------------ATCAAAATGTTT------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     32783  29 -    90967 -------------------------------------------------------TTGTCACT-------GATAATTTATTGAC----------------atcaatc-----------------------------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   428067 132 +   823664 agatagCCTCGCACTGCTGCCAAAACGGGAAGTGCGCACCGCAccttatagaaaattcccttTTCCCAGAAATATTTCATT-------------------CTTGCAATgcataatttaaaaaaattaaacgcaaaaaatttgaaaaaatgc---------------
i caeJap4.Scaffold18194 C 0 I 3
e caePb3.Scfld02_0       3572873  22 +  4147112 I

a score=71508.000000
s ce10.chrX              5289135 249 + 17718866 AAAAACGAAAACGC---ATTCGCATTATCTTT------------------------------------------TTGCAGGTTGCTACGACTCAACCTTGAACGATCTGAATGTTCTCA-CTCAAGGACTGATATCGGCAGCTGATGAATCAGTTTCCGTGAACATAGTATCCAGATGTTCATTATGTGCTCAAATCATCATCAATTCTAACCAAGA----AACAACAAAAAAGTTTTCGGATATAAAAGTGTTCAAATGCGGACACATTTTTCACTTGGCTTGTTCTACTTCTGAGGT
s cb4.chrX              10640268 220 + 21540570 -----------------------------------------------------------------------------CAGGCTGCTACGATTCAACACTAAATGACCTGCACGTGCTCA-CCAACAACTTGATGCTTGCATCGGATAAATCAGTCTCTGTCAGTCTAATGACTAGATGTAGTTTGTGTTCCCAAGTAATCATGAATACGGGTCAGGATATGATTCCGC-GAAAGTTCAACGATATCAAAGTGTTCAAGTGCGGTCACATCTTCCATCTCACTTGCTCGGCTTCCGAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2083272 216 -  4500979 ------------------------------------------------------------------------------AGGTTGCTACGAGTCAACGTTGAATGATCTGAGTGTTCTCA-CACAAAATCTTCTGCAAGCTTCCGATGAATCAGTCCCTGTCACCCTGATGACTAGATGTTCCCTTTGCTCACAAATAATCATGGCTTCCAACCAAGA----ACTCGGTAGAAAGCTCACCGATATCAAAGTGTTCAAATGTGGTCATGTGTTCCATTTGGCGTGTTCCACTTCAGAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     32812 215 -    90967 --aaaa--------------------------------------------------------------------tttcaggttGCTACGAATCGACACTGAACGATGTGAGTGTCCTGA-CAAAAGACTTATTGAAAACGGCGAATGCATCAGTGGATGTTTTCGTGACGTCCAGGTGTTCTCTGTGCTCTCAAATTGTTAACAGCCTA------GA----AATCGGAAAGAAGATCTCTGAgctgaaagttttcaaatgtgGTCATATCTTCCATTCTGCGTG---TTCTTCGGAGGT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3572895 231 +  4147112 AAAAAAGAA---------------------TC------------------------------------------TTGTAGGTTGCTACGAATCACAACTGGCTGATGTGACTGCTTTGAGCAAAGGACTGCTTTCATCTGCCGCAAG-GGCAACGGAAGTCAACATGTTCACCAAATGCTCACTGTGCGATCAAATCATCAACAACTCGACACATGA----GACGGGCAAGAAATTCACCGAAATAAAAGTGTTCAAGTGTGGACATATTTTCCATATGTCTTGCACTTCCTCTGAGGT
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold18194   428202 288 +   823664 aaaaacaaaaacgtttactccacgtggtcttcTAGTTTTTGCCCCCTctagaaaaatacaatttttgttcTCCATCTCAGGCTGCTACGAGTCGACGCTCAACGACCTGAATGTGCTCA-CTCAAAATTTGTTGGCCACCGCTGACGAATCGGTTCCGGTGACCGTGTCGACGAAATGCGCCGTATGCCTGGAAATCATTATAAACTCGAGCTTGGA-------GCACAAAAAGTTTAACGACATTAAAGTTTTCAAGTGCGGACACATTTTTCATATCAGTTG---CACTGCTGAGGT
i caeJap4.Scaffold18194 I 3 I 17

a score=-15876.000000
s ce10.chrX              5289384 32 + 17718866 ---------ACCCTT------------------AAATAAATTTTCTGGGTC----------------------------------------CAACAAAA
s cb4.chrX              10640488 37 + 21540570 ACAGTAACCAGTTTTTTCCt---------cta-atttctaatttc----------------------------------------------ca------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2083488 29 -  4500979 ---------AGttctttc---------------aattcaaattgt----------------------------------------------CATTAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33027 90 -    90967 ---------AATCATATCAAACTCTTTCACTATAAtcagagttgtatggaatgaaaatttctctatctggaatatggaatatggaatatggaatgaaaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3573126 37 +  4147112 ---------AATCCTTACAA-------------AAATGGTGTTGTGTGATA----------------------------------------AATAAACa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   428490 17 +   823664 I

a score=18744.000000
s ce10.chrX              5289416 115 + 17718866 TGTT-----------------------------------------------------------CTGCAATTTTCAGA---------TGGAACGCCGTCAATCAA---------TTGAGGA---GGGCCTCTGCATTGCGTGCTCTGATCAAATCGAACTCATCAACGTGTAAATATTAATTCAGGTTAACTTTTA
s cb4.chrX              10640525 101 + 21540570 ------------------------------------------------------------------attttttcaga---------ttgatcgCCGACAAATGA---------TTGAGGA---CGGGATTTGCATTGCGTGCTCGGACAACTCGGACCATGTCAACGTATAACTATCA-------TCAACGTGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2083517 103 -  4500979 TATG------------------------------------------------------------TTCTCTTCACAGA---------TCGATCGTCGTCACTCAA---------TCGAAGA---CGGCATTTGCATCTCTTGCTCCGACAACTCAGATTCTGTCAACGTGTAATT-----------TAAAAATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33117 168 -    90967 aaaagctggaatatggaatatggaatctggaatatggattccatacaactctgactataatgtttcttttcttcagaatttcaagttGGATCGTCGTCAATCAA---------TTGAAGA---AGGAATATGCATTGCTTGCTCTGACAAAGTGGACACCACTAACGTGTGAA---------------ACGTATA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3573163 107 +  4147112 aaga----------------------------------------------------------------tttttcagagtttcaaagCTGATCGTCGCCAATCTA---------TAGAAGA---AGGGATCTGCATTGCATGCTCCGATAAAATGGACAAAAACAACGTGTAAA------------TCTATGTGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   428507 136 +   823664 --------------------------------------------------TGTTTTGAAACCATTGTTTTCAGCAAA---------CTGACCGTCGacaatcgatgaaaatggTTGAAGATAGAGGAAAGTGCACTGCGTGCTCTGATCAAATCGAACAGATTGAcatttgagcttttttttaaaaatattttta
i caeJap4.Scaffold18194 I 17 I 1762

a score=4148.000000
s ce10.chrX              5289531 95 + 17718866 A---AACTGGAAC--TTGTC--AGaatttgaaatttgaaatttcaaatgtcaaatttcaaacttcaaaATTTATTACGGCTACT--TATGTTCATTTCTGTGAT
s cb4.chrX              10640626 71 + 21540570 A---AGTAATCCTCAACAACCAAAAACCT-----------CAACAACAGTTCATT---------------TCATTACGGCTACT--TTTGTT--TCTCTGTGAT
i cb4.chrX              C 0 I 512
s caeRem4.Crem_Contig0   2083620 69 -  4500979 C---AGTAAACCC--GCTAC--AAAACGT-----------TTTCAACAGTTCATT---------------TCATTACGGATATTAACTTTTC--TCTCTGTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33285 68 -    90967 TTCGGTTAATTAC--GTGAC--AAAAACT---------------ATCAGTTCATTT-------------CTTATTACGGCTatt--tatgtt--tttctgtgat
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3573270 62 +  4147112 ATCATATTTATTT--GTGAC--AAATTTT---------------AACAGTT-------------------TCATTACGGCTATT--TATGTT--TTTCTGTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   428643 1762 +   823664 I

a score=-2285.000000
s ce10.chrX              5289626 3 + 17718866 CCA--
s caeRem4.Crem_Contig0   2083689 3 -  4500979 --aga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33353 3 -    90967 -caa-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3573332 3 +  4147112 -CAA-
i caePb3.Scfld02_0      C 0 I 7407
e caeJap4.Scaffold18194   428643 1762 +   823664 I
e cb4.chrX              10640697 512 + 21540570 I

a score=-1929.000000
s ce10.chrX              5289629  9 + 17718866 CTTCTTGGC----
s caeRem4.Crem_Contig0   2083692 13 -  4500979 ttattttgaattc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33356  1 -    90967 -----------t-
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3573335 7407 +  4147112 I
e caeJap4.Scaffold18194   428643 1762 +   823664 I
e cb4.chrX              10640697 512 + 21540570 I

a score=-20162.000000
s ce10.chrX              5289638  61 + 17718866 TAGTTAT-------ATATATGTTTGTC-------------------------------TTATTTC-----------------------------------------------------------------------------------------CCGTGT---------------------TAAATAAATTA----------TCGAAATTGAGCA--GATC
s caeRem4.Crem_Contig0   2083705 221 -  4500979 tagTGATTATATTCATGTATATAAAGTAAATTGTTTGCCACAATAATGTTTTAgacatttattttgaaaatgttgtagGCTATGCTCTTGTATATTTCACAAACATTCAACGATGGTTCTGGTATTACAGTAATGCGTCGATGGAGACATAGTTTTATTGAAACCTTCGATGCCGATcggatttaaaaataattatcgCTTGTGAAAAAGTAATACGAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33357  65 -    90967 ----------------caattttaaat---------------------------CTAGTTGTTCT----------------------------------------------------------------------------------------TTCACTG---------------------TATAtaaatga--attatttatgAGACTGTGGGc--attc
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3580742  79 +  4147112 TAGTGAT-------ATGTATGTTGAATGAACCTTATCCCA----------TTTGCTAGTTATTct-------------------------------------------------------------------------------------------actt---------------------tctcaaaatt-----------tgcaaCAACAGCA--AATC
i caePb3.Scfld02_0      I 7407 C 0
e caeJap4.Scaffold18194   428643 1762 +   823664 I
e cb4.chrX              10640697 512 + 21540570 I

a score=-31696.000000
s ce10.chrX              5289699 251 + 17718866 -----AACATTATCTTCATTTGACAA------AAATATAGG---------AATAATGCATCATTCAACT--------TTT---------TTTT-------TACATTCTGTTTATAT--CTGCACACAATTAGCA-CTCTTTGATGCATT----------------TGAA-----------------------ATAGATGACCTAG---------TTA-----GAGGGGAGAACG--ATGGCATCCAATGTAATAAGAATTCA-----------------------------------------ATAAATATTT----AGGAACGAACATTATAAACTT------TGAATATGAAT--------CAGGAG-------ACAACGGTTTTTTGGAAC-----GCTGGAAAATTTGAAATG----------GAAACAA
s cb4.chrX              10641209 310 + 21540570 -----------aactttatttccaaa----gaaaaaagagacaagcTTAAAAATTCGCATCTTTCAATCTTTACACAATACACAGCAtttttt-------tACATTCTGTTCATACGTGTTCACATCTTTCCTAGCTCTCTGATGCTTT----------------AAAATGTTATAATGGCGAAATGTGAggaaaaataggtaaaaaagAATG---G-----GGGAATTCGAAG--TCCAAGCTTCATCTTAAATGg----------------------------------------------aggaaaacgaagaaaaggaagaagaataaaa----------atagcatcagctattttttgatgag------------tttttttggaattgaagggaagaaaaattcagaaag--------ttgttacag
i cb4.chrX              I 512 C 0
s caeRem4.Crem_Contig0   2083926 276 -  4500979 -----AACCGCATCTTCATTtgccaa----gaagaaaaaaa-aagcat-aaaaTTTGCATCATTCAATC--------ATACACAG----TTTT-------TACATTCTGTTCATAC--ATTCACATCTTTCCTAGCCCTTTGatgcttc----------------aaaa-----------------------ataaattggcCGAGACAAATA-ACG-----AGGGATTGGAAG--TGGAAATTCCCTTTAAAAAAG----------------------------------------------ATAGGTGTAGttaaattaaagaaaaatagaattatgAGTGGAGAGCATCAAA--------AGTgcg------------attttttggaatt-----ccgaaaaagtttggaaag--------tTGTGACag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33422 367 -    90967 atttgattc--atttattttttcacagCACATGGGTACAGG-TTGCTG--GATGCCGGACTGTTTGATA--------CTCCG-------TTTTATAATAGTTGGTTTTTGTTACAA--GTTCA---GTCTTCAAATACTTCGATGCTTTGTGCTCTTAAATTTAGAGAA-----------------------ATAGAACGATTCGTATTTTTATTCGTTCGAAGTGAGAAAAAGCTTTTCAGTTGCATCTTTTAATCATACAATTTTTACATTATGTTCATACATTCACGCCTCTCCTAATTTATTGATGCTTCGAAACAAATGAGAAAGTTGACACTT-----TCAATAGTTAc---------atgagagaagaaaaaatagttattcAGCCA-----atggagaaatgagaaatgcaAACCTCTCGGAATAT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3580821 237 +  4147112 GAATCAATCGAATCTTTATTTGCACA----ATGGGAAAAAT-AAGCTT--AAAATTGCATCCTTCACTC--------ATACA-------TTTT-------TACATTCTGTTCATAC--ATTCACACCTTTCCTAGCTTTTTGATGCTTT----------------AGTA-----------------------CATGAGGGGCTTACAAtagtttttg-----agagagaaaaaa---------------------------------------------------------------------atagatacTT--AAATAAAGGAGCaataagaatttt-----ttggaattaac---------gtgaa------------aatgattca---------------aaatttgaattg----------gggacag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   428643 1762 +   823664 I

a score=195280.000000
s ce10.chrX              5289950 422 + 17718866  
s cb4.chrX              10641519 459 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2084202 454 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     33789 461 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3581058 436 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   430405 405 +   823664  
i caeJap4.Scaffold18194 I 1762 I 52

a score=-13854.000000
s ce10.chrX              5290372 86 + 17718866 TAAATGCAAAAAAGTTAAGAAGGAACTTTACGGCACTGGCATTGTGAGCACATCACCGACAAAATCGGGCACT---ATCCCGCCCGGCT
s cb4.chrX              10641978 22 + 21540570 -------aaaa-------------------------------------------agggagaaaatC----------GTTTAG-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2084656 32 -  4500979 -------AAAAGA---------------------------------AATGCGTTGGTGACGGAATC----------GTTTCG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     34250 35 -    90967 -------aaaaaa---------------------------------a-------aggttaaCCGTCAGACACTCAGATATTT-------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3581494 27 +  4147112 -------aaaaaaa-------------------------------ga-------aggaatgcCATC----------ATTTTT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   430810 52 +   823664 I

a score=78775.000000
s ce10.chrX              5290458 441 + 17718866  
s cb4.chrX              10642000 417 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2084688 422 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     34285 385 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3581521 382 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   430862 389 +   823664  
i caeJap4.Scaffold18194 I 52 I 2335

a score=55048.000000
s ce10.chrX              5290899 171 + 17718866 AAAATGG---------------------AGAGAGAGAGTGTG-TGTCACACTTTCCATCCAGCAGAAGCAAGAAAAGGAGCTTTTT------AGACCTCTCAAACAC--TTTTTTAATCATCCTAGTGTCTTTTCATGCGAGTGAAAAATGAAATAAGT------------GTCCCT-----------------------------------TGACTTGCAAGCGACAAGACTAAAGTACAAAAGAAT
s cb4.chrX              10642417 212 + 21540570 AAGATGAAGAAGGAGGGGCGGggtgaagaaagaaaaaggttCTGAGCG--------------------------AGAGAAATTCCTCAGACTCGACCTCTCAAACAC-TTTTTTAAATCATCCTAGTGTCTTTTCAtgcgag-aaaaaatgaaataagtgTATTTGTGTGAGTGCCT-----TGCTTCTTCGACTTTTCACTCGACGTAGTCTGTTTTCT---TAACAAGACTAAAGTACAAAAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2085110 161 -  4500979 aata------------------------aaagaaagagGTTC-GGTCG-----------------------------GGAATTCCTCAGAC-CGACCTCtcaaacac-tttttttaaTCATCCTAGTGTTTTTTCAtgcgag-aaaaaatgaaataagt------------gTGCCT-----CGCTTCT-----------CTCCGATTATTCTGACTTCT--GTGACATGACTAAAGTACAAAAGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     34670 154 -    90967 agaatgaa--------------------aagaagggaGGATC-TGTCA-----------------------------AGCATTTCT------AGACCTctcaaacac-tttttttaatcatcCTAGTGTTTTGCCatgcgagaaaaaaatgaagtagaG------------GTACTCTCGTTGactttt-----------------------tgactttt--ctGACAAGACTAAAGTACAAAAGAAT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3581903 150 +  4147112 gaaagaga--------------------aaaaggagaggttC-TGTCA-----------------------------AGAATTTCT------AGGCCtctcaaacacttttttttaatcatccTAGTGTCTTTtcatgcgaaaaaaaaatgaagtaagt------------GTACTC-----GACTTTT-----------------------TGCCTTCC--TTGACAAGACTAAAGTACAAAAGAAT
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold18194   431251 2335 +   823664 I

a score=-6040.000000
s ce10.chrX              5291070 38 + 17718866 ------------GAGAGGAAACTCGAT-----TGTGAGAATA-AGGATACAATTGG
s cb4.chrX              10642629 47 + 21540570 AAAATA---------GGGAACCTTGATGGTGGCACAGGAAGGCAAGCGACAACTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2085271 37 -  4500979 AAAAT--------------ACTTTGGT-----CACAAGACAATTGGAAAGAAATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     34824 41 -    90967 GAATTACTTAGTCATGAGAGCCTTTCT-----CAAAAGCATTTTAG----------
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3582053 42 +  4147112 I
e caeJap4.Scaffold18194   431251 2335 +   823664 I

a score=48818.000000
s ce10.chrX              5291108 533 + 17718866  
s cb4.chrX              10642676 624 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2085308 544 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     34865 517 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3582095 525 +  4147112  
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold18194   431251 2335 +   823664 I

a score=192752.000000
s ce10.chrX              5291641 188 + 17718866 CACTCACCAGTCGATGAGTTGTCGGGCTCAGTGTCCACTTGGCGAACTCGAAAGTCAAGATTTGAACTGAGAACTGACGCGTCGACACGTTGATCGTTCATCCGTTTCGACTGCAGCTTTGCAAGCATATCAAAGAACTCTTCCTTCTCGTAGCGGTCCTCGGCGAGCGGATCCTCCGGCGTCTGAAA
s cb4.chrX              10643300 188 + 21540570 TACATACCTGTCGACGAGTTGTCGGGCTCTGTGTCGGTTTGGCGGACTCTGAAGTCGATGTTCGCGTTGAGAACCGATGCATCTACTCGTTGATCGTTCATCCTTTTTGACTGCAACTTTGCTAGCATATCGAAGAACTCCTCCTTCTCGTACCGATCCTCAGCGAGTGGATCCTCGGGCGTCTCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2085852 188 -  4500979 CACTTACCAGTTGAAGAGTTGTCCGGTTCTGTGTCGGTTTGTCGAACTCTGAAGTCAATGTTTGTGTTGAGAACGGAAGCATCTACACGTTGGTCgttcattctttttgattgCAGCTTTGCAAGCATATCAAAAAACTCCTCCTTCTCGTAGCGATCCTCTGCAAGTGGATCCTCgggtgtctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     35382 188 -    90967 GACTTACCAGTTGAAGAGTTATCCGGTTCTGTGTCGGTCTGACGAACTCTGAAGTCAAGGTTCGAGTTGAGAACGGATGCATCAACACGTTGGTCGTTCATTCTCTTTGATTGCAACTTTGCGAGCATATCAAAGAACTCCTCCTTCTCGTAGCGATCCTCTGCAAGCGGATCCTCCGGAGTctaaaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3582620 188 +  4147112 TACTCACCAGTGGATGAGTTATCCGGCTCAGTGTCGGTTTGACGAACTCTGAAGTCGAGATTCGAGTTGAGAACCGACGCATCCACACGTTGGTCGTTCATTCTCTTTGACTGCAGCTTTGCTAGCATGTCAAAGAACTCTTCCTTCTCGTAACGATCTTCAGCCAGTGGATCCTCTGGGGTCtgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   433586 188 +   823664 CACTCACCAGTCGACGAGTTGTCCGGCTCGGTGTCACACTGACGAACTCGAAAGTCTGGATTCGAGTTGAGGACCGAGACATCAACGCGTTGATCATTCATTCTGTTCGACTGCAGCTTTGCTAGCATATCAAAAAACTCCTCCTTCTCGTAACGGTCTTCCGCAAGCGGATCCTCCGGTGTCTGGAA
i caeJap4.Scaffold18194 I 2335 I 435

a score=-1197.000000
s ce10.chrX              5291829 1 + 17718866 --T
s cb4.chrX              10643488 2 + 21540570 AT-
i cb4.chrX              C 0 I 145
s caeSp111.Scaffold527     35570 1 -    90967 --t
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3582808 1 +  4147112 --t
i caePb3.Scfld02_0      C 0 I 157
e caeJap4.Scaffold18194   433774 435 +   823664 I
e caeRem4.Crem_Contig0   2086040 0 -  4500979 C

a score=0.000000
s ce10.chrX              5291830 1 + 17718866 G
e caePb3.Scfld02_0       3582809 157 +  4147112 I
e caeJap4.Scaffold18194   433774 435 +   823664 I
e cb4.chrX              10643490 145 + 21540570 I
e caeSp111.Scaffold527     35571 1 -    90967 I
e caeRem4.Crem_Contig0   2086040 0 -  4500979 C

a score=-1337.000000
s ce10.chrX              5291831  97 + 17718866 CACACAAAATTTAT--------TGCACTGGTTGGGGGTTGGTCAAAAACATATGTTGCAAATT-------TTTAA--GAGTAGGACGAGGAGAACTCAAATT-AGCTCAAAATAA-
s caeRem4.Crem_Contig0   2086040  95 -  4500979 --------atagat-----aaatgAATGAGGAGATTGACTGCTTGCAAcatatgtttcttttttgttgcaatcAA--AAACAGGAAGAGGAActcataaaat------caaaaaaa
i caeRem4.Crem_Contig0  C 0 I 67
s caeSp111.Scaffold527     35572 102 -    90967 -------aatgaatgtaaaaaatgaattaagaGA-GGTCAATCAGAAACATATGCTACTTATTGTTTGT-ATCAAggaaataggaaaataaga----aaaatgtgctacaaagaa-
i caeSp111.Scaffold527  I 1 I 5
e caePb3.Scfld02_0       3582809 157 +  4147112 I
e caeJap4.Scaffold18194   433774 435 +   823664 I
e cb4.chrX              10643490 145 + 21540570 I

a score=0.000000
s ce10.chrX              5291928 701 + 17718866  
e caePb3.Scfld02_0       3582809 157 +  4147112 I
e caeJap4.Scaffold18194   433774 435 +   823664 I
e cb4.chrX              10643490 145 + 21540570 I
e caeSp111.Scaffold527     35674   5 -    90967 I
e caeRem4.Crem_Contig0   2086135  67 -  4500979 I

a score=91.000000
s ce10.chrX              5292629 1 + 17718866 A
s caeSp111.Scaffold527     35679 1 -    90967 a
i caeSp111.Scaffold527  I 5 C 0
e caePb3.Scfld02_0       3582809 157 +  4147112 I
e caeJap4.Scaffold18194   433774 435 +   823664 I
e cb4.chrX              10643490 145 + 21540570 I
e caeRem4.Crem_Contig0   2086135 67 -  4500979 I

a score=844.000000
s ce10.chrX              5292630 2 + 17718866 AA
s cb4.chrX              10643635 2 + 21540570 AA
i cb4.chrX              I 145 C 0
s caeRem4.Crem_Contig0   2086202 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 67 C 0
s caeSp111.Scaffold527     35680 2 -    90967 ga
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3582966 2 +  4147112 AG
i caePb3.Scfld02_0      I 157 C 0
e caeJap4.Scaffold18194   433774 435 +   823664 I

a score=16533.000000
s ce10.chrX              5292632 274 + 17718866  
s cb4.chrX              10643637 315 + 21540570  
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   2086204 303 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 58
s caeSp111.Scaffold527     35682 264 -    90967  
i caeSp111.Scaffold527  C 0 I 14
s caePb3.Scfld02_0       3582968 391 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   434209 398 +   823664  
i caeJap4.Scaffold18194 I 435 C 0

a score=-8505.000000
s ce10.chrX              5292906 32 + 17718866 CTAGTA-CTGAATACACAATATTCTTTTGTTT--G-
s cb4.chrX              10643972 34 + 21540570 TCACTGACGgaataaaaaacagaaattttgttag--
i cb4.chrX              I 20 C 0
s caeSp111.Scaffold527     35960 32 -    90967 CTAGTACCCAAAACAAGATGAGTAACTCGATA----
i caeSp111.Scaffold527  I 14 C 0
s caePb3.Scfld02_0       3583360 31 +  4147112 -gagtaatcaaatacaattttgacactttcta----
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   434607 26 +   823664 -------CTAGATTTAAACTATTTTGTTGTCC---G
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2086507 58 -  4500979 I

a score=105939.000000
s ce10.chrX              5292938 112 + 17718866 CCAGC----------------------------ACTCACCTCGATATCGTCAACAAGCACGTCTTCTTGTCCGGCCTCCAGAATTTCGTTGAGCAAGTTATCAATGTCAGTGAGCGCACTGGTGTCGTTCACCTTCAAAA--
s cb4.chrX              10644006 137 + 21540570 -aaatgaaaaatctagaaatcctGACTCATCGGACTTACCTCGATATCGTCGATAAGCACGTTTTCTTGTCCGGCCTCCAGAATTTCGTGCAGCAAATTATCAATGTCAAGGATGGCACTCGTGTCGTTAACcttcaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2086565 110 -  4500979 CAAAT----------------------------ACTCACCTCAATATCGTCTATCAGCACGTCTTCCTGTCCAGCCTCCAGAATTTCGTTGAGCAAGTTATCAATGTCAGTGATGGCACTCGTGTCGTTGACCTTCAA----
i caeRem4.Crem_Contig0  I 58 C 0
s caeSp111.Scaffold527     35992 110 -    90967 CAATT----------------------------TCTCACCTCAATATCGTCGATGAGCACGTCTTCTTGTCCGGCCTCCAGGATTTCGCTGAGCAAATTATCAATGTCAGTAATGGCGCTGGTGTCGTTAAccttcaa----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3583391 109 +  4147112 -aatt----------------------------tctcaCCTCAATATCGTCAATGAGAACGTCTTCTTGTCCGGCCTCCAGGATTTCGTTCAGCAAGTTATCAATGTCAATGATGGAGCTCGTGTCGTTAACCTATAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   434633 107 +   823664 ---------------------------------ACTCACCTCAATATCGTCGATAAGAACGTCTTCTTGTCCAGCCTCCAGAATCTCGTTTAGCAAATTATCAATGTCGAGAATTGCGCTCGTGTCGTTAACCTTCAA--AA
i caeJap4.Scaffold18194 C 0 I 1356

a score=12327.000000
s ce10.chrX              5293050 481 + 17718866  
s cb4.chrX              10644143 563 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2086675 560 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     36102 543 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3583500 535 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   434740 1356 +   823664 I

a score=-265.000000
s ce10.chrX              5293531 1 + 17718866 C
s caeRem4.Crem_Contig0   2087235 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 153
s caePb3.Scfld02_0       3584035 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18194   436096 1 +   823664 c
i caeJap4.Scaffold18194 I 1356 C 0
e cb4.chrX              10644706 7 + 21540570 I
e caeSp111.Scaffold527     36645 0 -    90967 C

a score=147310.000000
s ce10.chrX              5293532 178 + 17718866 ACA--------------------------------------------------------------------------------------------------CAACATACCTGAAGAGAACTCCGTTTTGCGAGGACCAGAAAATAAAGTGCCTTGCGACGTTCACAAAGGTTGTTGAATGACAGCGCAAGTGAGTAGTATGATCGCAGTTGTCCCGATATGTCTTCTAAACTCCGTGCAATTTTAAGATGACGTTGGAAATAGGTGATTGCTGAAA
s cb4.chrX              10644713 176 + 21540570 ----------------------------------------------------------------------------------------------------ATAACATACCTGAAGTGAATTCCGTTTGGCGAGAACCAAGTAGTAGAGTGCCTTGCGACGTTCACACAGATTGTTAAATGACAAAGCAAGTGAGTAACACGATCGAAGCTGTCCGGAGATGTCCTCTAAGCTTCTGGCGATTTTGAGATGACGTTGGAAGTATGTGAttgctggaa
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2087389 276 -  4500979 acacattttttagaaGGTGAACAAGTAAATaaggagaggccagccggatgaagcgccgaaggcgcggcagccaggctggtaaGAGATAAATTGAGAGTTGGTGATATACCTGAAGAGAGCTCCTCTTAGCAAGGACCAAGAAATAAAGTGCTTTGCGTCGTTCACAGAGATTGTTGAATGACAAAGCGAGTGAATAGTATGATCGTAACTGTCCGGAGATGTCTTCCAAGCTTCGGGCAATTTTGAGATGACGTTGGAAGTATGtgatagctgaaa
i caeRem4.Crem_Contig0  I 153 C 0
s caeSp111.Scaffold527     36645 175 -    90967 -----------------------------------------------------------------------------------------------------CGACATACCTGAAGAGAGCTTCTCTTGGCGAGCACCAAGAAATAGAGAGCTTTACGCCGTTCGCTGAGATTGTTGAATGACAAAGCAAGTGAATAGTATGATCGCAATTGTCCAGATATATCCTCCAGACTACGTGCGATTTTGAGATGACGTTGAAAGTAGGTGATCGCTGAAA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3584040 177 +  4147112 ---------------------------------------------------------------------------------------------------GCCATTATACCTGAAGAGAACTCCGCTTGGCAAGGACCAAGAAATAAAGTGCTTTGCGTCGTTCGCAGAGGTTGTTGAATGACAACGCAAGTGAGTAGTATGATCGCAACTGTCCCGAGATATCCTCCAAACTACGTGCGATTTTGAGATGACGTTGAAAGTATGTGATGgctgaaa
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   436097 181 +   823664 -----------------------------------------------------------------------------------------------acacactcacaTACCTGAAGCGAAATCCGTTTGGCAAGCACCAAAAAGTAGAGAGCCTTTTGTCGATCCCTGAGATTGTTGAATGAAAGCGCCAACGAGTAATATGCTCGCAACTGTCCTGACGTGTCTTCTAACGAACGTGCAATTTTCAGATGACGTTGAAAGTATACAATAGctgaaa
i caeJap4.Scaffold18194 C 0 I 1916

a score=105059.000000
s ce10.chrX              5293710 508 + 17718866  
s cb4.chrX              10644889 590 + 21540570  
i cb4.chrX              C 0 I 476
s caeRem4.Crem_Contig0   2087665 508 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold527     36820 537 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3584217 491 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   436278 1916 +   823664 I

a score=5733.000000
s ce10.chrX              5294218 169 + 17718866 GCGGTTGCTCCGAGAGCACTGAAAATGAGATGGTTACCCACACCAGCACCATCACAAAAAGGAGAACAACAAGATGACAAAAAAGCTC----GTCAGACAA------------AAATATTGGACATAGCATCACATTGGATTTTTTTCTTTTGGTGGTAACTATTCTAGAAAGGGTTGTTTTAAG----
s caeRem4.Crem_Contig0   2088183 149 -  4500979 --GATGTTGGTGTAAGTAGAAAAATTG---TGGTA--------------GgcgaaaaagagaacaacgacgagacaaaaaaaaagctgGGATGccagagaaaggaa-------aaaaaatggacatagcaaaaaatagaatattgt-------GGGATAACAATTCCAG---GAGCTGTTTTTGT----
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold527     37357 168 -    90967 GTGGTATTGCTGAAACTGGTGATGTTG-GCTGGTG----ACATAGCCATGGTTATAGGGAGAAAAGCAAC-AGAAAGACAAGAAGCCGCATAGGGAGAGATAgaaagggagaaaaaaaatggacaaagc-aaaaatagaatattgT-------CGGATAACAATTCCAG---GAGCTGTTTTT----AG
i caeSp111.Scaffold527  C 0 I 319
s caePb3.Scfld02_0       3584708 143 +  4147112 GTGGTATTGCTGGTACTGGTGATGTGATGTTGGAA----GAAGAGCTATGGTTATAG------------------------GAAGCCGCAT-GTCAGAGAAAGAAGGGG----GAAAAATGGACATCGC-AAAAATAGAATATCG---------GGATAGCAATTCTAG---GAGCTGGTTTCTCTGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I

a score=-176.000000
s ce10.chrX              5294387 4 + 17718866 ATTC
s caeRem4.Crem_Contig0   2088332 3 -  4500979 GTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3584851 4 +  4147112 GTTC
i caePb3.Scfld02_0      C 0 I 219
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=-1988.000000
s ce10.chrX              5294391 244 + 17718866 ATCTATATGTGACAACAATCAAGAAAACTCGAAGATCGCAGTTTAGAAACATGGGCTCATCTTTGCTTAAACCAAGCTGGGGAG--ATGACTGAGCCAAA---ATTTTGTTGACAAAAATTATCGCTTATAAA-ACTCGAACGGAAAATTTAAATAGATTTTAGAAAAAAAAGAGTAAAGAAAACCCTAGTGTTCGTTATCAAATGTTACTTTTGCTAATACAC-CGAATATCCCTTTTTAGTTTTTAAAT
s caeRem4.Crem_Contig0   2088335 146 -  4500979 ---------------------------------------------------------------------------GCTGGGGATTCACCAGTGGAACAAATACATTCAATCCGTAAAAATAATGAACTATTAGTACTCacgtggaaaa----aagaaaacggagaagaagaaga----agaaga--------------atcaaatCTT---TTTCCGGACACATACGtatattgaattttagatGT-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3584855 219 +  4147112 I
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=-5485.000000
s ce10.chrX              5294635 118 + 17718866 CAGAAGAT-----TGAAATTGTATATATTTTTG--AGAAAACTCAATTATTGCTGCTGATTCTTACATCGACAACATTAAAGTACAAA--------CGATTGAAATACAATCAAAATTTTATCGCAAGCTCGT
s caeRem4.Crem_Contig0   2088481  52 -  4500979 -----------------------------------GGgaa------------------------ccaccaccaccactaaAGTGAAAT--------GTact--------------attttttgattggtTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3585074 124 +  4147112 CCGAAGATATGACTAAAATTGGACTTTCTTATTTTAGAAAGCTCG--TA-------TGAATTTTCCAATGGAATCAAAAAAGCAGGATCGCATTTCGTATTCAAAACCAATTATGGTTTTCCAACGAAGTATT
i caePb3.Scfld02_0      I 219 I 54
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=-323.000000
s ce10.chrX              5294753 51 + 17718866 AGACAAATAGTTTTTCCAAATTACTATAGGTGAAGAGGGAGTTTTTACCAC
s caeRem4.Crem_Contig0   2088533 35 -  4500979 AGGTA--------TTC----TCACggttggggggggggggggtttcA----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3585198 54 +  4147112 I
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=-2748.000000
s ce10.chrX              5294804 91 + 17718866 ----------TTTTTGATTGAACATAAAATACTTTTAAATAACTTTCTGAGGTTTTACTATGTATTTGGTCATTACTTACAAGT--------------AGTTTTTTTTAGATATT
s caeRem4.Crem_Contig0   2088568 64 -  4500979 TTTAATCTAGTTCTGATTTTTAAGCAGAAAAA-----------------------------GTAATTGGTTATTCTTTACGATT--------------AA---TTTCTAC-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3585252 73 +  4147112 ----------tttttaattcaaaatgagAGAA-----------------------------CCACTATGTAATTATTATCAATTCAACCTAtgataacaa---ttttcaaacatc
i caePb3.Scfld02_0      I 54 I 88
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=1.000000
s ce10.chrX              5294895 76 + 17718866 TAAACTTTCTTCTGCTA----------AACCTTGCCAATAAAAGTTCGAAAACTTTTATTCAAATTTTTTTGACGAAAAACGAAAA
s caeRem4.Crem_Contig0   2088632 74 -  4500979 -AACTTTTCTTATAGTGGATATATAGTAAATTGGCCTACA-----TCACAAATGTTTATTGATGGTAGTT------AGAACGAAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3585325 88 +  4147112 I
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=-12824.000000
s ce10.chrX              5294971 208 + 17718866 CAAGCATAGAAAATAAAAACTGGAGACAGAAAAA-------TATGAGAAGGTTCTGGTGTGAAAGGCAATTTGAAGAATTCAAGTGCAGCTGTAAATTCGAAAATTTTTCAAAAATTTTCTCAGAATGTCAGTTCAAATGACTATTATTATCGCGGAGCACAATTA--------------TACCCGAGAGTGTTTGTAGAATGAAGACGGAAATTTTAACATGACTTGG-------------------------------------------------------
s caeRem4.Crem_Contig0   2088706 100 -  4500979 ------CAGACACAAAGCTGCGATTGCGGTTAAAATCAATCTCCGATAAAA-------GTgaagc--------aaaaaatcaaacatagt--------------------------------------------------ACTTTTCTGAT-------CAAAACTA--------------CACCTGACT-----------------------------------------------------------------------------------CAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3585413 206 +  4147112 caatttcaaaaacaaaaaactaaacactaattatttctgtttctaagaaa---------tgaaat----tttgaaaatatcaagtttatc--------------------------------------------------attattttcat-------CATGACTGAAAAACTTCATGATCACCTAACT---TTCACTCaacgaaaccaaaaat-----cacaaCTCATAAGAGCTGAATGTAAAAACCGATAAAGAAGAAACTGGAATGTGCAAACTTCTGGA
i caePb3.Scfld02_0      I 88 I 17
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I
e caeSp111.Scaffold527     37525 319 -    90967 I

a score=1545.000000
s ce10.chrX              5295179 14 + 17718866 TGGGGTGTTGGCAC
s caeRem4.Crem_Contig0   2088806  9 -  4500979 -----TGTGTGCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     37844 14 -    90967 TGGCGTGTATTCAC
i caeSp111.Scaffold527  I 319 C 0
s caePb3.Scfld02_0       3585636 14 +  4147112 TAGTATAAAAGCAC
i caePb3.Scfld02_0      I 17 C 0
e caeJap4.Scaffold18194   436278 1916 +   823664 I
e cb4.chrX              10645479 476 + 21540570 I

a score=114467.000000
s ce10.chrX              5295193 325 + 17718866 GTTTTTT--------GCAAAGAGATATATGCGAAATTCGTTGGCTTGTTTATCAAATGATGCACAAG--CG-----AATTGTCACA--TAAG------ATGTCATATGTTAGAGCTGACCAGCTGTTTGTGAACAGA------ACATAGAGTGAAAAA-------GAGCTTTCGAGAATGAGGACAAGTTGC----------------------------------------CGGAAT-------------------AAAGAAAA------GAAGA---------------G------AACGTCATC--AGAGCAA-AATCTTGGTAGCAAGAAA-CGAAAAAGAAAGGAAAAAAGGCGTTATGACCAT--------TGATGAAATTCAATAGCCATTACC--------CGTGGGTTTTGTGGAC------CCCGTCTTTTTTGC---AGGATCTCATGTA------CGCGGCCAACACCTA
s cb4.chrX              10645955 407 + 21540570 gttttATGCATCGAAAGAGAAGAATAGGTGAAAAATTCCTATATGTGTTTATCAAATGATGCGCGTG--CGAAAGAAATCGTCACA--TAAGATTTCTATGTCAAATGTTC-AGCTGACCAGCTGTTTGTGAACATA------ACATACAGCACG-AAACGAATGGAG----TGAAAACGAGGACAAGTTGCCCagcaaaaatgctattttcaA--CGACATAAACTGACTCCGgaacttggaaaaaagaagaacgagtaagaga------gaaaa-----gaaacggATCGGGCCGAAACGTCATC--AAAGAGC-AACTCT--GAACTACCATCTGAGCACCAAACGACAAGG-----TATGCCTATTGTCAAAATGGTGAAATTCAATACCTATTACC-----TGTTGTGGACttttt--------------------ttGC---AGGATCTCATGTAGACCCTC--------CTTTTA
i cb4.chrX              I 476 C 0
s caeRem4.Crem_Contig0   2088815 369 -  4500979 GTTTTTC----------AAAGGGATAGGTG--AAATTCCTGAGTTTGTTTATCAAATGATGCGTGAG--CG-----AATCGTCACA--TAAG------ATGTCAAATGTTC-AGCTGACCAGCTGTTTGTGAACATA------ACAGAGAGT----AAAC-----GAG----TGAAAACGAGGACAAGTTGC--------AATGCTATTTTCAA--CGACATAAACTGACTCCGGAac----------------cgagaagaaga------gaagacttTTGGAGTGAATCG------AACGTCATC--AGAGCAA-AACTCT--CAACAAGCGG-TAAGCAAAGAAGAATTGGGGGC--TATGACCATTATTGATATGATGAAATTCAATACCTATTACCCAGTTTGTTGTAGGTTTTTTGTGCCCC---CTCCCACTTCTTGC---AAGATCTCATGTA------C--------CTCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     37858 375 -    90967 GTTTTTC---------GAAAGGGATAGGTG--AAATTCCTCAGCTTGTTTATCAAATGATGCGTGAG--CG-----AATCGTCACA--TAAG------ATGTCAAATGTTC-AGCTGACCAGCTGTTTGTGAACataacacacacacacacagtgAAAAC-----GAG----TCGAAACGAGGACAACT-------------TGCTATTTTCAACGCGACACAAACTGACTCCGGAac----------------cgagaagaagaacgaa-aaaga-----gaCTCAAATGG------AACGTCATC--AGAGCAAGAATTCT--CAGCTCGCGG-TGA----GAAAAGACAAGGAGC--TATGACCATtattgaaatgatgaaattcaATACCTATTACttttttgtgtgtaggttttttgtgatca---ctctctttttttgca--agGATCTCATGTA------C--------CTCCTA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3585650 383 +  4147112 GTTTTGT---------CGAAAGGATAGGTG--AAATTCAACATCTTGTTTATCAAATGATGCGTGAGACAA-----AATCGTCACACTCAAG------ATGTCAAATGTTC-AGTTGACCAGCTGTTTGTGAACATA------ACACACATTGAGAAAACGG---GAG----TGAAAACTAGGACAAGTTGC-------AAATGCTATTTTCAA--CGACATAAACTGACTCCGGAAC----------------cccgaaaaaagaagaagagaga-----agactgAATTG------AACGTCATCAGAGAGCAACAACTCT--CAGCATGCGG-T------AAAAGGAGGGGGAGC--TATGACCATTATTGAAATAACGAAATTCAATACctattacttttttctgtgtAGGTTTTTTATGCTTACTCCTCCCATTTGTTGCAAGAGGATTCTATGTA------C----------CCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   436278 1916 +   823664 I

a score=200146.000000
s ce10.chrX              5295518 345 + 17718866  
s cb4.chrX              10646362 469 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   2089184 422 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold527     38233 426 -    90967  
i caeSp111.Scaffold527  C 0 I 29
s caePb3.Scfld02_0       3586033 381 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   438194 465 +   823664  
i caeJap4.Scaffold18194 I 1916 C 0

a score=-8444.000000
s ce10.chrX              5295863 20 + 17718866 GGGTGTGAATGAGTCG-----------------------CAAA---
s cb4.chrX              10646841 43 + 21540570 GGTTCAGgttgtttctctctctctctctctctctctctctctc---
i cb4.chrX              I 10 I 27
s caeRem4.Crem_Contig0   2089627 20 -  4500979 GATTCAGGTTCTTCCG-----------------------TCTA---
i caeRem4.Crem_Contig0  I 21 I 27
s caePb3.Scfld02_0       3586414 18 +  4147112 GACTGAGA--GTTTCG-----------------------TAGA---
i caePb3.Scfld02_0      C 0 I 26
s caeJap4.Scaffold18194   438659 19 +   823664 ----aaaaaagtttaa-----------------------ccGGCGC
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     38659 29 -    90967 I

a score=19982.000000
s ce10.chrX              5295883 153 + 17718866 ------ACGTCTTTG------------ACTTTTCTGACGTGAGTCTCAAGA--CCTGCTTGG----ACTTATTTCAAAGT---AGAGAAACAAAAAATGAAAAGAAAGACAAGAGGTTTGTC-------------------AAAAGTTTCTCAAATTAAAAATTCAATCTG-----------------------G--CAAGAAGTAAAAGGAAGTGA----ATG-----CTCA
s cb4.chrX              10646911 175 + 21540570 ------ttgctttTCCCCTCGCTTCCACTCATTCTGACGTGTGTCTCAAGAGTTCCGTCTTCTTC-ACCTCATTTGgcca--------------aaa-------agag--aaagagttTGTGGTaaag-----------ggaaaaatttgacaa---agaaattgaatctggcaggataaaagaacaaaaaagaa--gaagaagtaagaGGAAGTGG----ATG--------A
i cb4.chrX              I 27 I 32
s caeRem4.Crem_Contig0   2089674 166 -  4500979 ------ttgttttttcctttt----------ttctgacgTGAGTCTCAAGAGTTCCGTCTCAACCAACCTCACACGCACA--------------AAAAGTGAGGAGAG--AAGAGGTTtgtcggaa---------------aaaaaattgacaa---agaaATTGAATCTGTCAGGATGAAAG-----------G--GAAAAAGTAAGAGGAAGTGA----ATGCAATGCTCA
i caeRem4.Crem_Contig0  I 27 I 61
s caeSp111.Scaffold527     38688 177 -    90967 ------CCCTTTTTG------------CCTATTCTGACGTGTGTCTGAAGAGTTCCGTCTCA----ACACCGATTGACAA---AAGGAAGCggtgaaagagagaaaaa--ggaaggtttgtcgggaagaa-------gagacaaaaaatgagag---agaaattgaatctgGCTAGataaaag-----------g--gaaaaagtAAAGGGAAGTGA----ATG--Atgcaaa
i caeSp111.Scaffold527  I 29 I 35
s caePb3.Scfld02_0       3586458 181 +  4147112 ------ctctttttttccttc------cctATTCTGACGTGAGTCTCAAGAGTTCCGTCTCG----ACACCTCTCGacaacagaagaaagaagtaaa----agaaaag--aagaggtttgtcggcaca--------------aaaaattgacaa---agaaaTCGAATCTGGCAGGATaaaag-----------ggagaaaaagtagaaggaAGTGGATGCATG--Atgcaaa
i caePb3.Scfld02_0      I 26 I 42
s caeJap4.Scaffold18194   438678 164 +   823664 CGCCGCTCACTTTCCTCTTCT------CATCTCTTCTCTTTCTTCCCAA---TTCTG---------ACGTAAattgcaaa-------------taaaaaaaaataaaa--aaaaacttggctTTAAAGGAGAAGAACGATGGGAAAATTAAGGA---ATAAATTGAGGCTTGCGA-------------------C--GAATAAG--AAAGGAAGTga----att---tcc---
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5296036 28 + 17718866 AAACCCAACGTTCTATGATATATGTCCA
e caePb3.Scfld02_0       3586639 42 +  4147112 I
e caeJap4.Scaffold18194   438842  0 +   823664 C
e cb4.chrX              10647086 32 + 21540570 I
e caeSp111.Scaffold527     38865 35 -    90967 I
e caeRem4.Crem_Contig0   2089840 61 -  4500979 I

a score=-30126.000000
s ce10.chrX              5296064  99 + 17718866 GTTCTTTTTTCTTAGG---TTTCTGTGTTCCTCAAATTTCATTATTCGA-ATA----------------AAAAACAACA-----T------------------------TTTCGCAG---------TCCTGATTGGCTTCATGTTTTTCTTTAGAA-----A
s cb4.chrX              10647118 104 + 21540570 GTTCACGTTCCATTGG----TTCTGTATTTTGGTAACCTCGTTTCaggaaaca----------------acaaaaaacagagCTT-----------TCTATTATCTAGATTTCATAT-----TCCTTTCTGATTGAGTCA----------------------
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   2089901 116 -  4500979 --TCTTGCCAGCCCGG----TTTTGTGCTGGTGAAATTtcattattcgaaa--------------------aaaaaacacattct-----------TATTTTAGGCAG-TTCCATAT-----TC---TGTGATTCTGTCAACTTTATCCTTTTTGGGAAGGG
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold527     38900 129 -    90967 GTTCACGTTTTCTGGACATTCTTTTCTGGTAAGGAATCTCATTACTcgc-aga----------------aaaaacaacacgATTC---------------TTCGTCAG-TTTCTCCTTGGCTTCCTTTCACTTTGAATCAGTCTCTTcccaaaaaagaatca
i caeSp111.Scaffold527  I 35 C 0
s caePb3.Scfld02_0       3586681 129 +  4147112 GTTCACTTTCCCTGGGACAGCCTTGCTTCGAAGAAATCTCAttacatacaaaa----------------aaaaacaacaagattTGCTTTCTTTTCTATATTTGGCAG-TATCTCAT-------CTTTCTGATTGAGTCAACTCAGTTTC---------TCG
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18194   438842 111 +   823664 ---------------------ttttcttttttggaacACAATACAACACAATAATGCAACccaaccaagaaaaaaaacaggaagaaAGAACCGAGCCGATTTTcggat-tttctttt-----ttttttcttttcggaA------------------------
i caeJap4.Scaffold18194 C 0 I 37

a score=15743.000000
s ce10.chrX              5296163 62 + 17718866 AAAACAGGGACCGGGAAGT-------TCAGAGTATAACTGAATGATTTACAAATTCAAGGTCACACGCC
s cb4.chrX              10647222 54 + 21540570 ------GGGACCCGGAAGT-------TAGAGATGAAATTTGATGACATCCCT--TGGAGGACACATGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2090017 65 -  4500979 AGAACTGGGACCCGGAAGTTT----CTAAGAATGAAATTTGATGACATACATAATTGAGGACACATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     39029 60 -    90967 aaaaa-gggaCCCGGAACTTGagaacaagaaatgaaatttgatgaCAC--------GAGGACACATGTA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3586810 48 +  4147112 AAGAC-GGGACCCGGAA------------GCATGAAATTTGATGACAT--------GAGGACACATGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   438953 37 +   823664 I

a score=234825.000000
s ce10.chrX              5296225 705 + 17718866  
s cb4.chrX              10647276 667 + 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2090082 699 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold527     39089 660 -    90967  
i caeSp111.Scaffold527  C 0 I 224
s caePb3.Scfld02_0       3586858 652 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   438990 643 +   823664  
i caeJap4.Scaffold18194 I 37 I 882

a score=-79354.000000
s ce10.chrX              5296930 563 + 17718866  
s cb4.chrX              10647958 630 + 21540570  
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2090789 272 -  4500979  
i caeRem4.Crem_Contig0  I 8 I 17
s caePb3.Scfld02_0       3587510 272 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   439633 882 +   823664 I
e caeSp111.Scaffold527     39749 224 -    90967 I

a score=-348.000000
s ce10.chrX              5297493 4 + 17718866 --TGCA
s cb4.chrX              10648588 5 + 21540570 -GGACA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3587782 6 +  4147112 CATATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   439633 882 +   823664 I
e caeSp111.Scaffold527     39749 224 -    90967 I
e caeRem4.Crem_Contig0   2091061 17 -  4500979 I

a score=-4991.000000
s ce10.chrX              5297497 27 + 17718866 TTTTTTTTTC--------------AAG--TACAAAATCAAGTT------
s cb4.chrX              10648593 41 + 21540570 ACATATTGCCCGGGTGCAtgagagaaa--tggagaaacaAAAC------
i cb4.chrX              C 0 I 2
s caePb3.Scfld02_0       3587788 26 +  4147112 ATCCATTAC---------------GAC--TAGTGCAACGAGAC------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   440515 35 +   823664 tttaattttc--------------aaatttaaaccAACAACTTAAAAAT
i caeJap4.Scaffold18194 I 882 C 0
e caeSp111.Scaffold527     39749 224 -    90967 I
e caeRem4.Crem_Contig0   2091061 17 -  4500979 I

a score=-2440.000000
s ce10.chrX              5297524 2 + 17718866 CT-
s cb4.chrX              10648636 1 + 21540570 C--
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2091078 1 -  4500979 C--
i caeRem4.Crem_Contig0  I 17 C 0
s caePb3.Scfld02_0       3587817 1 +  4147112 C--
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   440550 2 +   823664 C-G
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     39749 224 -    90967 I

a score=373439.000000
s ce10.chrX              5297526 495 + 17718866  
s cb4.chrX              10648637 492 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2091079 508 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold527     39973 507 -    90967  
i caeSp111.Scaffold527  I 224 C 0
s caePb3.Scfld02_0       3587818 499 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   440552 525 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1408.000000
s ce10.chrX              5298021 25 + 17718866 ATCGATTGATATTC--------TTCGA---TGACAA
s cb4.chrX              10649129 36 + 21540570 atcaataattatcCTTGCCACGTTGCGTTttgacaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     40480 28 -    90967 -tcaataattgtcct-------tttctttttgaaaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3588317 28 +  4147112 gtcaataattattc--------attcaaacggaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   441077 25 +   823664 aaaaatcaatattt--------tttaaacataa---
i caeJap4.Scaffold18194 C 0 I 20
e caeRem4.Crem_Contig0   2091587 33 -  4500979 I

a score=-1422.000000
s ce10.chrX              5298046 7 + 17718866 AGATTTC
s cb4.chrX              10649165 3 + 21540570 aga----
i cb4.chrX              C 0 I 10
s caeSp111.Scaffold527     40508 7 -    90967 gaaaact
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3588345 7 +  4147112 aaatgcg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   441102 20 +   823664 I
e caeRem4.Crem_Contig0   2091587 33 -  4500979 I

a score=-5363.000000
s ce10.chrX              5298053 22 + 17718866 AGAAATCTG---CACAATACTAGAA
s cb4.chrX              10649178 19 + 21540570 ataacacga------attttgacga
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2091620 12 -  4500979 ataaaac-------------ggcgg
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold527     40515 17 -    90967 --aaaactg------aagtgagcca
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3588352 23 +  4147112 --aaaaatttcATACAATGTTGCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   441102 20 +   823664 I

a score=87990.000000
s ce10.chrX              5298075 262 + 17718866 AAAAGGAGAGAAACACA-AGCGATTAAGATTGAGAA------AGAAGAATCGAA--------AT--GTGGTCTTTCAGAACAGAAAGGGTGGTCAATGTAGAAAAAAAGGTATTTGAATGATTTATTCGAACGAGTACGGACCAACAAACTCCTCTGTTTGTTCGTTGCACGGCCGCT---CTCAGTACATG-GAAAGAAACGTCCTTGCTATGTCTGCG-----------GCAGCTCTCTCGTTC------ACTCCT----CACGACAGATGAGCTAG-TAACCGCGCGT--TGACGTCATTTGTG
s cb4.chrX              10649197 258 + 21540570 aaaatgaaggaaaaatt-cttga--agaaatAGATA------GACTTGAAGAAA--------AC--GGGATTTGTCGGAGAGAAACAAG--------------TGAAAAGTGTTCGAATGATTTATTGGAACGAGTACGGACCAACATAGTCTTTTGTTTGTTCGTTGCACGGCCC-----CTCTGTATGCG-AAAAGAAACACTACTTTTGCGTCTGCGTCTCGCAC---TCTCTCCTCTC-TTCACCCCAACAGCA----CACAAAAAATGTGCTAGAGGGGTGCGCGC--TGACGTCATATCTG
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   2091632 258 -  4500979 agcactaaaaacaagtt-gtaaa--aaaagaaaaaaagatgtgactagaaaaaagaaaacatac--gtggcttgtcaaaagaaaaactc--------------aaaaaagtattCGAATGATTTATTCGAACAAGTACGGACCGACGTAGTCTTTTGTTTGTTCGTTACACGGCCG-----CTCAGTAtgcgaaaaagaaacattctcGATGTGTCTGTG-----------TCTCTGCTCTC-TAT------ACATGA----CCCAACAGATGAGCTAG-TGGCCGCGCGC--TGACGTCATTTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     40532 237 -    90967 aaaatagagaacgcacgcggaga--aaaatgagaaa------aaataaaacaaa--------ag--gagatttgttcggaga----------------------aaaaagtattcgaATGATTTATTCGAACGAGTACGGACCAACGTAGCCTTTTGTTTGTTCGATGCACCGCCG-----CTCAGTACGCGGAAAAGAAACATACTTGTTGTGTCTGCG-----------TCTGCACTCTC-TCT------TCACTA----CACAACAAATGAGCTAG-TGGTTGCGCGT--TGACGTCACTGACG
i caeSp111.Scaffold527  C 0 I 5
s caePb3.Scfld02_0       3588375 237 +  4147112 ATAACGTTAAAAACTCG-GTTGA--AACATAGG---------AAGTGAAACAGA--------AACTCAGgtttttttggcgg----------------------gaaaacaattcaaatgatttattgGAACGAGTACGGACCCGCATAGCCTTTTGTTTGTTCGCAACATCGTCG-----CTCAGTACGCGTAAAAGAAACATCGTCGTTgcatctgcgtc---------tcttccctttt-tct------aCACAA----CACAACAAATGAGCTAG-TGGCTGCGCGC--TGACGTCACTCCCG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   441122 236 +   823664 ---GCAGGgtaaaaatc-acaag--aaaAGCGAGAA------ATTTAGgagaaa--------at---------ttctgaaaa----------------------aaaaa------gaatgcgtTATTCAGAAACGTatggaccaaaaaaaaatcttctttATTTGTT---CGGTCGCTCAGCTCAGTACGCG--GAAGAAA-ATGCTCAACGTGTCTGCGTcgttctctctctttctctctc-tct------ccctcacacGCACAACAAATGAGCCAG-TAACCGCGCGCATTGACGTCATTTTTG
i caeJap4.Scaffold18194 I 20 C 0

a score=-460.000000
s ce10.chrX              5298337 4 + 17718866 TAAA
s caeRem4.Crem_Contig0   2091890 4 -  4500979 TCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     40774 4 -    90967 TCTC
i caeSp111.Scaffold527  I 5 C 0
s caePb3.Scfld02_0       3588617 4 +  4147112 TCTC
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   441358 4 +   823664 CCGA
i caeJap4.Scaffold18194 C 0 I 260
e cb4.chrX              10649455 26 + 21540570 I

a score=-4016.000000
s ce10.chrX              5298341  9 + 17718866 GACGGCTAG--------
s caeRem4.Crem_Contig0   2091894  9 -  4500979 GTCAGTCAA--------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold527     40778 16 -    90967 AATAGGAAATT-GTGAT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3588621 17 +  4147112 TCTGAGAAAGTAGTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   441362 260 +   823664 I
e cb4.chrX              10649455 26 + 21540570 I

a score=3526.000000
s ce10.chrX              5298350 45 + 17718866 GAAGTATTGTTTCGAGC----AAAA--TATTTGTTAATTTAAAATGACAAA----
s cb4.chrX              10649481 42 + 21540570 GGAATccttttaaaaac----aaaaaat-gagaccattgaaaattca--------
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   2091910 46 -  4500979 GGAATCC-GTTAGAAAC----AAAAACTAGTGAATAATGCGGAATAATAAG----
i caeRem4.Crem_Contig0  I 7 I 41
s caeSp111.Scaffold527     40794 55 -    90967 GGAATCGTTttgagaacagaaaaaaactactgAATAATGCGGAGTCATAAGCTCT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3588638 47 +  4147112 GGAATccttttaaaaac----aaaaactactgaATAATGCTGAAT----AACGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   441362 260 +   823664 I

a score=1270.000000
s ce10.chrX              5298395 5 + 17718866 GGAAT
s cb4.chrX              10649523 5 + 21540570 ggaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     40849 5 -    90967 AAAAT
i caeSp111.Scaffold527  C 0 I 16
s caePb3.Scfld02_0       3588685 5 +  4147112 GATAT
i caePb3.Scfld02_0      C 0 I 200
e caeJap4.Scaffold18194   441362 260 +   823664 I
e caeRem4.Crem_Contig0   2091956 41 -  4500979 I

a score=-1005.000000
s ce10.chrX              5298400 18 + 17718866 ATAAACTGATAGTCTTAA-
s cb4.chrX              10649528 16 + 21540570 aaAAATGG---GTTGGGTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     40870 16 -    90967 ATAAACGG--CGttttat-
i caeSp111.Scaffold527  I 16 C 0
e caePb3.Scfld02_0       3588690 200 +  4147112 I
e caeJap4.Scaffold18194   441362 260 +   823664 I
e caeRem4.Crem_Contig0   2091956 41 -  4500979 I

a score=-12440.000000
s ce10.chrX              5298418  70 + 17718866 --AAGATACATTACTCAAA--AAA-----------AAACT-----CTCATATG------------------------AAAAATATAAAT----TATTACCTT---------------AGAGTATCAAAAGTTC
s cb4.chrX              10649544 108 + 21540570 --ATGGTTCAT----CGCATTAAATAGCTCTATTCAAAGTATATATGCTTTTGGCTTG-------------------TAGCGTTTTTAAGGCGAATTTTCATCCGgagcaaaacaaaaaagcagGAGAAATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2091997  98 -  4500979 --GGGATACATTTGACGAAATGAAGTGCCTTGTCAGAATT-----TCCATCcggaatgaaagaaaacaagaaggaGAAAACAGACATAA---CAATTTCcat-----------------------ggaaat--
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold527     40886  91 -    90967 tggaaattttgCTGACGAA--AATGcgtgtttttgaaatt-----tccttGTGAcgttgaagaaaac----------aagaatataTAT-----ATCTTCAG--------------------aatagaaattg
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3588690 200 +  4147112 I
e caeJap4.Scaffold18194   441362 260 +   823664 I

a score=-9202.000000
s ce10.chrX              5298488 37 + 17718866 ACATTTAATTACCACTCACTC----------------AAAA--------------CAA---ATCTCTAAC
s cb4.chrX              10649652 54 + 21540570 A----------------ATGCGACTGGCGACTGAGTCAAGACATGCGAATGGCGGAAAAGCACCTGAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092095 19 -  4500979 -------------------------------------aaga--------------aaaagcaCCTGAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     40977 47 -    90967 agaataaaCCACCTGTTATGCAATTAAC---------AAGA--------------GAATTCGTCTCgttt
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   441622 48 +   823664 acattacatttcgactcattacatttattcCC-----AAAG--------------AAA---ACTTGAAAT
i caeJap4.Scaffold18194 I 260 I 207
e caePb3.Scfld02_0       3588690 200 +  4147112 I

a score=-751.000000
s ce10.chrX              5298525 14 + 17718866 CACAGTTAATTACC-
s cb4.chrX              10649706 14 + 21540570 AGCAATTAAAATAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092114 14 -  4500979 TGCAATTAAAAGTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41024 11 -    90967 ----atttcatttcc
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3588690 200 +  4147112 I
e caeJap4.Scaffold18194   441670 207 +   823664 I

a score=-12203.000000
s ce10.chrX              5298539 54 + 17718866 -----------------------AACAAACTGATTCAACTTGTTCAACTTCTGTTC-------------------CCTTTTCAATACTACTTGAAA----------
s cb4.chrX              10649720 89 + 21540570 AAATCACCATGACTATGTATTCCATTTCCTTGA--CAACgtccccttcttttttttgtgccACGCTCGTTTGTTCcctctt-----ttctttctga----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092128 63 -  4500979 AAATCACCTTGCCTATATTT---ATTTCCTTGA--CAACACCtccctctttt-----------------------cctttt-----cccttcCGAA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41035 50 -    90967 --gtCA--------------------------A--CGACCCTctttctttcctctt---------------------ttct-----gtCTTTATTATGACTCATGA
i caeSp111.Scaffold527  C 0 I 19
s caePb3.Scfld02_0       3588890 62 +  4147112 --GCCA----------ATTTCATTTCCCCCTGA--CGActccttccttctcttttt--------------------ctttt-----ctctccattaTGAAT-----
i caePb3.Scfld02_0      I 200 C 0
e caeJap4.Scaffold18194   441670 207 +   823664 I

a score=-6385.000000
s ce10.chrX              5298593 32 + 17718866 ---------CATTTCACACTCACA--TAGCAAAGAGCCCAGCA
s cb4.chrX              10649809 36 + 21540570 ----aCCGTTGACTCACAGAGATA---GCTGGAGAGCACGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092191 30 -  4500979 ----TGCTATAAATCACAGAGACT---AGTCGAGTG------G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3588952 36 +  4147112 CATTCCGGCTGGTCAACACACACTCTCTCTAGAGCC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   441670 207 +   823664 I
e caeSp111.Scaffold527     41085 19 -    90967 I

a score=546.000000
s ce10.chrX              5298625 1 + 17718866 A
s cb4.chrX              10649845 1 + 21540570 A
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2092221 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 6
s caeJap4.Scaffold18194   441877 1 +   823664 A
i caeJap4.Scaffold18194 I 207 C 0
e caePb3.Scfld02_0       3588988 0 +  4147112 C
e caeSp111.Scaffold527     41085 19 -    90967 I

a score=16378.000000
s ce10.chrX              5298626 42 + 17718866 CA-----------ACATATATTTACGTCGTGTTGCCCTGGTAACCGGGAGCGC
s cb4.chrX              10649852 53 + 21540570 TAAGGGCGCATTCACGCTTGTGTATGTTGGGTTTCCCTGGTAACCGAACGCAT
i cb4.chrX              I 6 I 1
s caeRem4.Crem_Contig0   2092228 42 -  4500979 TG-----------CCTCATATTTACGTTTTGTTGCCTGGGTAACCGAACGCAC
i caeRem4.Crem_Contig0  I 6 I 1
s caeSp111.Scaffold527     41104 42 -    90967 TG-----------TCCCGTATTTACAAAGTGTTACCCAGGCAACGAAACGCGC
i caeSp111.Scaffold527  I 19 I 20
s caePb3.Scfld02_0       3588988 35 +  4147112 ------------------TATTTACGTCAGGTTGCCTCGGAAACCAAACGCGC
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   441878 42 +   823664 -----------CACTGCGTGTTTACTTTGCGTCACCACGGCAACCAAAAGCGC
i caeJap4.Scaffold18194 C 0 C 0

a score=-3829.000000
s ce10.chrX              5298668 2 + 17718866 ------TG
s cb4.chrX              10649906 1 + 21540570 ------G-
i cb4.chrX              I 1 I 43
s caeRem4.Crem_Contig0   2092271 1 -  4500979 ------T-
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3589024 1 +  4147112 ------T-
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   441920 6 +   823664 TCGCAA--
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     41146 20 -    90967 I

a score=-3335.000000
s ce10.chrX              5298670 12 + 17718866 ------CTCGACGAGCTC
s caeRem4.Crem_Contig0   2092272  7 -  4500979 -----------TGAAAGC
i caeRem4.Crem_Contig0  C 0 I 10
s caePb3.Scfld02_0       3589025 10 +  4147112 --------TGAGGAAAAC
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18194   441926 14 +   823664 CTCAGGCGTGGTGC----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10649907 43 + 21540570 I
e caeSp111.Scaffold527     41146 20 -    90967 I

a score=-1046.000000
s ce10.chrX              5298682 26 + 17718866 GCGTTT-ATTGTCATCACTAAC------GGTGT
s caeRem4.Crem_Contig0   2092289 24 -  4500979 GCGTTA-TTTGAGAGCGAAATT------GGT--
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold527     41166 25 -    90967 GCGTTA-GTAGCCATCAAAAG-------GGTTG
i caeSp111.Scaffold527  I 20 C 0
s caePb3.Scfld02_0       3589042 27 +  4147112 GCGTTATTTTGTCACTAAAAGT------GGTAG
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18194   441940 32 +   823664 ACATCA-GTTAAGAGCACGAGCTAGAAAAGTTC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10649907 43 + 21540570 I

a score=37565.000000
s ce10.chrX              5298708 258 + 17718866 ATCCTTAAGATGTCGAACGATATTCAAGGGTTTATTCTCCACTTTTTGAATGAAGAGCCGTTCAATCTCAACTTATCATCACTTCAATTCGACCAATTACCACCGCAGCAGTTGCTCCAAATTTTGAGTAATGTTTTGAGGTTGGTT-------AAGTCAAAAAAAGAAAT----------TTAAAAAATGCGATATCGAGAAAAAACAGTTATGGTGTTT------AAAATATTCACAAA-----------------AATTTTCCAGAAACGTGT----GCTACATTTTTTGTGACAATTA
s cb4.chrX              10649950 217 + 21540570 aagttcaaaatgacGAGCAATATGACCTCGTTCATTATGCATTTTCTGAATGATGAGCCATTCAATCTTAACTTGTCTACACTCCAATTTGACAGTATGCAGCCACAGCAACTGCTTCAATTGCTGAGTAACGTTCTCTGGTGAgtt---------------------aat----------ttgaaa------ttat---------ggAGTTCTG------------AGAAAGTTGGAACT-----------------AAAA-----GAgcgtttt----tttgtgttttgagaCAACA-AG
i cb4.chrX              I 43 C 0
s caeRem4.Crem_Contig0   2092313 247 -  4500979 ----TCAAGATGGCGAACAACATGGCTACGTTCAtattgcactttttgaacgaTGAACCGTTCAATCTCAACTTGTCAACACTACAATTCGACCAAATGCAACACCAACAACTGCTACAATTGTTAAGCAATGTCTTGAGGTCAGTTTTTGACGGAGTAAGAAATGTGAAT----------TTCATA------TTATTAATTGAAATGAACCCTGGTAttcattggaaaaaaattggatgt-----------------ga----------tgattt----atta-attttcagtttac---g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41191 225 -    90967 ---GTCAAGATGCCTAACGAAATGCAAGCGTTCATTTTGCACTTTCTCAACGATGAACCGTTTAACTACAACTATTCCACACTACAATTTGATCAAATGGCTCCTCAACAACTATTGCAAACGTTGAGCAACGTCTTGAGGTTTGTG---------------------AAT----------CCAAAA------TTGT-----GAAATgggaaacagaaag-------agaaaactcgCAGT----CAGTTTTCATACTAAAT-----GAAACTTCT----GTTACGTTT------------A
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3589069 255 +  4147112 ---TTCAAGATGCCGAACGATGTGCAATCGTTCATACTTCACTTTCTCAATGAGGAACCGTTCAACTACAACATGTCGACTCTACAGTTCGACCAGATGGCACCACAACAGTTGCTACAAACATTAAGCAATGTATTAACGTAAGTG---------------------TATTTTGGAATAACTGAAA------CTATTTCTGATGATAGAGTATGAAATG-------TATAGATTAGCGGGACGACACTGACGTTacaaaatct-ggaaaagtGCTTGGAGTTCcgctttca---------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   441972 179 +   823664 AATAACATGATGCTTAATGATATTCCGTCGTTTATTCTACAATATTTAAACAATGAACCGTTCAATCTCAACTTGTCGTCACTGCAATTTGATCAAATGCAACCTCAACAACTTCTACAGACGCTCAGTAATGTTTTGAGGTAAAAT---------------------AGC----------ttgtta------tttt-------------cttttttttt-------aaacgatta------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 I 110

a score=-11614.000000
s ce10.chrX              5298966 50 + 17718866 AAAAACAGCTACTTTATTATTATTGTATCGTTATTTTTTCAAGAATT----TTT--
s cb4.chrX              10650167 52 + 21540570 AAAACAAGTAATGTAGGTAcgagattttttggtttttttttcaaagt----ttttt
i cb4.chrX              C 0 I 56
s caeRem4.Crem_Contig0   2092560 56 -  4500979 gattcaaacttttttggataATAATTACTTAAATTGATTATGACAGctgaatttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41416 45 -    90967 AGATACAATTGTTTTAAATCAGGATTCCTCA-----CCTAAGGGAAC----TGT--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3589324 37 +  4147112 aaatcttattattctaattttAAAGAC-------------AGGAAAT----TAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   442151 110 +   823664 I

a score=-6775.000000
s ce10.chrX              5299016 51 + 17718866 CAAAGaaatataaataaatttttttaatttctaaaaataGCTTTACCTTTA-----
s caeRem4.Crem_Contig0   2092616 25 -  4500979 cgaatttATTTCTATCAA-------------------------TAACTTT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41461 27 -    90967 gaggaaaatagaaatgaaa------------------------tgaaaatg-----
i caeSp111.Scaffold527  C 0 I 7
s caePb3.Scfld02_0       3589361 40 +  4147112 GAAAGATATAACAAGTAGG----------------AATAGCTCTGAGTCTGACTAT
i caePb3.Scfld02_0      C 0 I 114
e caeJap4.Scaffold18194   442151 110 +   823664 I
e cb4.chrX              10650219 56 + 21540570 I

a score=0.000000
s ce10.chrX              5299067 11 + 17718866 ATTGTACTTTT
e caePb3.Scfld02_0       3589401 114 +  4147112 I
e caeJap4.Scaffold18194   442151 110 +   823664 I
e cb4.chrX              10650219 56 + 21540570 I
e caeSp111.Scaffold527     41488  7 -    90967 I
e caeRem4.Crem_Contig0   2092641  0 -  4500979 C

a score=-3836.000000
s ce10.chrX              5299078 17 + 17718866 GGATGTTGCTCAAAAAA-----
s cb4.chrX              10650275  6 + 21540570 -----------ACTGTA-----
i cb4.chrX              I 56 I 3
s caeRem4.Crem_Contig0   2092641 10 -  4500979 -------GATCAGAGAA-----
i caeRem4.Crem_Contig0  C 0 I 138
s caeSp111.Scaffold527     41495 18 -    90967 CGA----TACCACATTAACTAA
i caeSp111.Scaffold527  I 7 C 0
e caePb3.Scfld02_0       3589401 114 +  4147112 I
e caeJap4.Scaffold18194   442151 110 +   823664 I

a score=-12381.000000
s ce10.chrX              5299095 80 + 17718866 AGGCACA----AAGTT----ACAATGTGCGTGTTAAATTTGCTGGTTGGCAAACTGATACTAATGTCAGTTTTTGAG---CAATCTTCTTA
s cb4.chrX              10650284 61 + 21540570 AGGC---------GTT----Actatttttacagtaatcct-------------ctaaT-CTAGTTGCAAGTTTTGAG---GAGCTTCTATA
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold527     41513 11 -    90967 -------------------------------------------------------------AACTACAAAGT-------------------
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   442261 72 +   823664 aggcaCACGGCATGTTCGGGACTAAGTGTTAGAAAacttt-------------------tgagatcaaattttcgagcgccaattctcgca
i caeJap4.Scaffold18194 I 110 I 252
e caePb3.Scfld02_0       3589401 114 +  4147112 I
e caeRem4.Crem_Contig0   2092651 138 -  4500979 I

a score=-614.000000
s ce10.chrX              5299175 2 + 17718866 AA--
s cb4.chrX              10650345 4 + 21540570 GTAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3589401 114 +  4147112 I
e caeJap4.Scaffold18194   442333 252 +   823664 I
e caeSp111.Scaffold527     41524 0 -    90967 C
e caeRem4.Crem_Contig0   2092651 138 -  4500979 I

a score=-16207.000000
s ce10.chrX              5299177 105 + 17718866 CTTTCTATTGAAAGTAATTATTTTATAGATTGCTGTGTAAATT--TAAAAAAAATTTGACACAACAATAAAGAAAAGGGGTATCAGCAGGTCCACTTGGGTAGAATG-
s cb4.chrX              10650349  83 + 21540570 CTATC--TAAGGAAGGACTA-ATGCTACACTTGTTTTATGGTTTCTTAAATTATggagattgaaaaattgttggaagaaaaa---------------------aatt-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     41524   4 -    90967 --------------------------------------------------------------------------------------------------------ATTT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3589515  76 +  4147112 CTTTC--TTGGAAATGATT-----TTGTATTACTGTAGTCGTT--TTAGAAGAAtcggattaaaaaa--aatgtagtgTATA---------------------GATTT
i caePb3.Scfld02_0      I 114 C 0
e caeJap4.Scaffold18194   442333 252 +   823664 I
e caeRem4.Crem_Contig0   2092651 138 -  4500979 I

a score=-57862.000000
s ce10.chrX              5299282 146 + 17718866 -----------------------TTCAAAAAAT---------TCGGTTCTTTCT-TATT---------------------------------------------------------TGTTTGCAAAATTTCAA---AA-----------GTCataaaaaa-------------attaagaaaaatttgaataaatttt-------------ttaCAAA--CACATAAATGCTCTCACTGATAAAATTGAATTTAATAATATAAGAACAACGAAAATTT
s cb4.chrX              10650432 108 + 21540570 -----------------------ttccaaacga-----------AATTGCCACG-TAAT-------------------------------------------------------------------ATTTTGGCAAAA-----------TTCacttgaat--------------tttcgatatgttctataaaa-----------------tttcaaa--aatcgaa------gaacCCGCGAGCTGAGAACTAGTGTAA------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092789  68 -  4500979 ---------------------TTcttaaaattt-----------agttttc-----------------------------------------------------------------------------tttgG---AA-----------CTCAC-------------------------------------ACA-----------------TTTCAAAGTAATC---------GTTTTTACGAGAACATAATAA------------------------
i caeRem4.Crem_Contig0  I 138 C 0
s caeSp111.Scaffold527     41528  82 -    90967 TT------CTATGAT------------AGACAC------ACTTCAATATTCACAATAac------------------------------------------------------------------------------------------ttcatgaaaaa-------------------tgatatcagAATGAA-----------------TTTCAGT--AACCta-------ttattctc-------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3589591 269 +  4147112 TTGCAATATTGTGATGACTTGATTCTAAAACATAGGATAAATTCAAGTTTTACGACAACAAAAGTTTGGACATGATAATATATCTGTTCGATGTACCACCGTACTGCTCGAAATTGTG-TCGTAAAGTCTTGG---AAACAAGTtagcattcaaaaaaaaaacacagattcaagtttcttgaaaacaaagtGAACATGCGATTCCATCAAGTTAAAAC--AACTTACATGGTTTGATTATCAACATGATAATTACCGAGATCAAatc--cgaaaa-ta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   442333 252 +   823664 I

a score=256583.000000
s ce10.chrX              5299428 333 + 17718866 TTAAAATGTTCAGCTGGGTTTCCGACACGGACCGAATTGATATCAAAAGAGAGGCTGCTGAAGAGACTGCAATTCGTATTCTGAATATGCTCCGAATTCTCCGCTACAGACCACCGCAAGACCAGGATGAACAGTT--CGTGCAAAACGAGGGCAATCA----CTAAACAGCAT--CTAATTTGACAT----TATA-TTACAGGGAAGAATGGCGTGCAGGGATTGTCGAAGGTCGCAAGACTAGCCTCTATCCTCTTCTGGTTTTTCTTTTTGAAAACTCAGAAGGTTTGAAAGAGCGCGCATATTTGTCAAAATATTTGATGAAGGTAATGAATTGCTATG-------CCA
s cb4.chrX              10650540 338 + 21540570 -----CTTTTCAGCTGGATCTTTGACCAAGAGCGAATTGATATAAAACGGGAAGCAGCCGAGGAAACAGCAATTCGCGTTTTGAATTCTCTCCGTATTCTTCGCTACCGTCCACCACAAGACCAGGAAGAACAGTAAGGGGACAAATTGAGGGCAATAAAAGGGCCAATGACAG--ccaa--taacaa----aat--tttcagagaagaatGGCGTGCCGGGATTGTTGAGGGTCGCAAGGGCAGCCTCTATCCGTTGCTCGTTTTTCTGTTTGAGAATTCGGAAGCGTTGAAAGAGCGAGCATATTTGGCAAAATATTTGATGAAGGTAATGAATTGCTGTGCTGGTGTTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2092857 326 -  4500979 -------TTTCAGCTGGATTTTCGACTCGGAACGTGTTGATATAAAAAGAGAGGCAGCCGAGGAGACTGCAATTCGGATTCTCAACTCGCTAAGAATTCTTCGCTATCGTCCGCCGCAAGACCAAGAAGAACAGTA--GGGACAAAGCGAGGGCACTTA----TTTAATGGAAG--TTAATTTGACAT----AATA-TTACAGAGAAGAATGGAGGGCAGGGATTGTTGAAGGACGGAAGACAAGTGTCTATCCGTTGCTCGTTTTTCTATTTGAGAATTCGGATGGTTTGAAAGAGCGAGCATATTTGGCAAAATATTTGATGAAGGTAATGAATTGCTATG-------TCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41610 329 -    90967 -----tttttcagctgGATCTTTGACACAGAACGTGTCGATATCAAAAGAGAAGCAGCGGAGGAAACCgcaattcgaattttcaatagTCTCCGAATTCTTCGCTACCGTCCACCACAAGGACAAGAAGAACAGTAA-GGGACAAAGCGAGGGCAATCA----GTTGATAGTTG--CTAATTTGACAC----AACA-TTACAGGGAAGAATGGCGTGCCGGGATTGTGGAGGGCCAAAAGAGCAGTCTCTATCCGTTGctcgtttttctgtttgaaaacTCGGAAGCGTTGAAAGAGCGAGCCTATTTGGCAAAATATTTGATGAAGGTAATGAATTGGTATG-------CCA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3589860 338 +  4147112 aaataattttcagctgGATTTCTGACTCGGAGCGTATCGATATCAAAAGAGAGGGTGCTGATGACACTGCTATCCGTATTCTCAATACTCTTAGAATTCTCCGATATCGTCCACCCGAAGGACAGGAAGAACAGTAAGGGGGCAAAGCGAGGGCAATTA----AGACATATTGGAACTAATTTAACAC----AACATTTACAGAGAAGAATGGCGCGCTGGGATTGTCGAGGGTCAAAAGAGCAGCCTCTATCCGTTGCTCGTTTTTCTATTCGAGAACTCGGACGCATTGAAAGAGCGAGCCTATTTGGCAAAATATTTGATGAAGGTAATGAATTGCTATG-------CCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   442585 335 +   823664 TACAAATTTACAGCTGGATCTCAGAAAGTGAAAACATCGATATTAAAAGAGAAGCAGCAGAAGACACTGCGATTCGAGTCCTTAATATGCTCCGAATCCTTCGATATCGACCACCGGAGGACCCGGAAGAGCAGTAAGAAAacgcaaaatttgaaatta--------acAGCAA--CTAATTTGGTGTTACAAATA-TTGCAGAGAAGAATGGCGCGCCGGAATCGTCGAAGGACAAAAAGCGAGTTTGTATCCGCTATTGGTGTTTCTTTTTGAGAACTCTGAATCTTTAAAAGAACGCGCATACTTGGCTAAATATTTGATAAAGGTGATGAATTTCTATG-------GCA
i caeJap4.Scaffold18194 I 252 I 906

a score=-4663.000000
s ce10.chrX              5299761 149 + 17718866 AAAGCCGA--------CATGTTATGCTAG----------TGGTTTCTGGGGGGAGAGAAATAGATGTTGTCATTATTTTTTTTAAAAGAAAAATGATACATAGAGAACA---AGCAT-CGTTCTGCT-----TGAATAGCTGA-TATAGT-----AGGCAAG-ACAGCCGAAGTTT----TTGGTTT
s cb4.chrX              10650878 118 + 21540570 AGA-CTGACAGAGCTCTATGCTCTACCaa----ctttcctctttttttgtggaagaaa-----------------------------agaaaagggaagaggaagaacgctcagtgt-cattatttt-----tgaa------a-aatgag-----aaaaaag-aaaat-----gct-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2093183 148 -  4500979 AAA-CCAA--------TACGCTCTACCACAGTTTTTTCCTCCATTCTGGAGAGAAAAA----GCGGTcgtcattattttt-------gaaaaatgatacatAAAGAACA---AGCGTCCGTTCTGCT-----TGAATTGCTGA-TCTCAG-----GAAAATGTAAAGC-----GCTTTATGTGGCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     41939 128 -    90967 GGA-TCAT------------GCATGCCag----tcgttttcttttctcgaaaaga----------ctTGTcattatattt-------gaaaaatgatacaCACAGAACA---TGATT-CGTACTTCT-----TAAATAATAGA-TGTCTA-----GAGGCAC-agagt-----ttt----ttggttt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3590198 126 +  4147112 GGA-CCAA------------GCGTGTC------------TCTTTTCCGTGGA---------------Taacattattttt-------gagaaatgaaacatGGAGAACa---agatt-cgttttttttgcggTGAATAATGGAGTGTGCGAGAATGGAGAAA-AGAGT-----TTT----GTGGTTT
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18194   442920 906 +   823664 I

a score=-2844.000000
s ce10.chrX              5299910 26 + 17718866 AGTTAGTCTCTGATCTAGGTACACAT-------
s cb4.chrX              10650996 21 + 21540570 -GGTAATTTGTC----AGGAATGCAA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2093331 22 -  4500979 GGTTTCTTTTTG----ACATAcatga-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42067 27 -    90967 --ttcctccctg----agagagaaaaagtgcat
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3590324 30 +  4147112 I
e caeJap4.Scaffold18194   442920 906 +   823664 I

a score=-20402.000000
s ce10.chrX              5299936  73 + 17718866 TGAATTAATGAATCAAGA--AATGGCTAAACAGCTT-CGCACT----TTTTTGTA------------------ATTGGAAATACGTAAATTA----------------ATT-----ATT
s cb4.chrX              10651017  70 + 21540570 ---------GAAACTTGC--AG-----AAC-------AAAACTTGG-TTATGa--------------------gtcagaaagaaaaaagttggcctgaaaaatatgggaat-----att
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2093353  79 -  4500979 ---------gaaatgaga--ag-----aaacattttggaaattaGG-TTCTTGCACCT---------------GTCAGAAAG--------TGCATTTGAGACTAGGATAATGTTCGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42094  88 -    90967 TGAATATTAGAAAAAGTACCAA-----AAACACCT--GATACT----CTCAGGTTTCA-----------TGAGATTGAAGAGATATTAA-TG--ATAGATAA------ATTGATCAAAT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3590354 104 +  4147112 agaatgcatgaaaaatga--ga-----aagcattt--caaatttggattcTTTTTTCACCTGAACACTCCGAGTTCGGAAGGATACAA------CTAGACAACATAATAATAATCTGTT
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18194   442920 906 +   823664 I

a score=177222.000000
s ce10.chrX              5300009 328 + 17718866 TTCAGACAGATGTACCTGGAGAATTCTTCGATTATGATATTGAAGAGCTGCAAAATGAG-ATTGGAGAGTTGACAATGGAGTTTAAGGTT------AATCACATGAGAGATTAGTCGTCA--------------CGATAGTGG-ATGAGCAAAAAAAAAGCAAAAACAAAAAAA--AACAAAACAACTTTTCTA--CAGGAAATCCATGCTGAAATGAAAGGAATAATGGCAGACGTACTCTTGCTTGATGACATAAAAGAGGATTTAAAGTCAATGGAAAAAGAAAAACAAATTTTGCTCCGAAAGATTGAGAAGACCGAGAAGAAAGTGCAGAATATACCATATTTTGATAA
s cb4.chrX              10651087 310 + 21540570 ttcagactgatGTTCCTGGGGAATTCTTCGACTATGATATTGAGGAGCTTCAGAATGAC-GTTACGGAATTGATGAACGAGTTCAAGGTG------AATCATA-------------------------------TCATAACAGAATGAACATAAA----GCCGTCATCATAATTCCAATAAAGCtgctattttt--caggaaatccaCGCGGAAACCAAGGATATTATGGCGGATGTACTTTTGTTGAATGATATCAAAGAAGATCTAAAGTcgatggaaaaagaaaaattaattttaatccGTAAAATTGAGAGAACAGAAGCAAAAGTTCAGACTAttccatattttgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2093432 345 -  4500979 TACAGACCGATGTCCCGGGAGAATTCTACGATTATGACATTGAAGAGCTTCAGAATGAG-ATTGGAGATCTAATGACAGAGTTCAAGGTG------AATCAGAC-AGGGAAGGGATTTCAGATTATTCCCTAAGTAACGgcaaaaggaaaacaaaag-tGGCGTGCTGAAAGATAGCATAATAATATTATTGTTGACAGGAAATTCATGCGGATGTCAAATCAGTTATGTCAGATGTACTATTGTTAAATGACATTAAAGAGGATTTGAAGTCAatggagaaggaaaaaatgattttggttcggaaaattgagaagaccGAAAAGAAGGTTCAAAATATACCGTATTTCGACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42182 321 -    90967 TTCAGACGGATGTTCCGGGAGAATTTTACGATTACGATGTTGAAGAGCTTCAGAACGAGTATTGCGGAACTAATGGCAGAGTTCAAGgtgaataaaaatcaaa---gaaactAGATTTA---------------TAAAAGCGTCATGGGAAGAGTAACTGAAGCCacaatcgtt-------------ttttgtt--taggAAGTGCATTCGGAGGGAAAAAACGTTCAAGCTGACGTTCTTTTGTTGGATGATATCAAAGAGGATTTGAAATCcatggagaaagaaaaacagattttaaTACgcaaaattgagaaaaccgAGAAGAAAGTGCAAAATATTCCGTACTTTgataa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3590458 304 +  4147112 TTCAGACAGATGTGCCTGGGGAATTCTACGACTATGATGTTGAGGAGCTTCAGAACGAG-ATTGCAGAGCTGATGACTGAGTTTAAGGTG------AATCATT---GAGCTGGGATGTC---------------TCATAGCAacgtcaaataaaaaaatgta-----aatagTT------------------TT--TAGGAAGTTCACGCTGAAGTAAAAAACATAATGGCGGATGTACTTTTATTGGATGATATTAAAGAGGATTTGAAGTCtatggaaaaggaaaagcaGATTTTGATTCGGAAGATtgagaaaacagagaagaaaGTGCAAAACATACCGTATTTTGACAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   443826 291 +   823664 tttAGACCGAAGTACCGGGTGACGTACAGGACTATGACACTGCTGAGCTGCAGAATGAT-CTTGCCGAGTATATGGCAGAGTTCAAGGTT------GGTAAAT---AGAAT-----------------------TAAAA-----ATGATGAGAAAAGTTATG-----AACACTT------------------TC--TAGGAAATTCACGCGGAACTAAAAGCAATAATGACGGATGTCTACTTGTTAGACGACATCAAAGACGACTTAAAGTCtatggaaaaagaaaaacagattttggcgcgaaaaattgagaaaacagagaagaaagttcaaaacataccgtattttgaaaa
i caeJap4.Scaffold18194 I 906 C 0

a score=2368.000000
s ce10.chrX              5300337 6 + 17718866 GTAAGT
s cb4.chrX              10651397 6 + 21540570 gtgtgg
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold527     42503 6 -    90967 gtgagt
i caeSp111.Scaffold527  C 0 I 55
s caePb3.Scfld02_0       3590762 6 +  4147112 GTGAGT
i caePb3.Scfld02_0      C 0 I 68
s caeJap4.Scaffold18194   444117 6 +   823664 gtttgt
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2093777 0 -  4500979 C

a score=0.000000
s ce10.chrX              5300343 1 + 17718866 T
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e caeJap4.Scaffold18194   444123 0 +   823664 C
e cb4.chrX              10651403 5 + 21540570 I
e caeSp111.Scaffold527     42509 55 -    90967 I
e caeRem4.Crem_Contig0   2093777 0 -  4500979 C

a score=-223.000000
s ce10.chrX              5300344 9 + 17718866 -CAAATAATG
s cb4.chrX              10651408 9 + 21540570 -AAAATGTTG
i cb4.chrX              I 5 I 18
s caeJap4.Scaffold18194   444123 7 +   823664 gAGAATG---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e caeSp111.Scaffold527     42509 55 -    90967 I
e caeRem4.Crem_Contig0   2093777 0 -  4500979 C

a score=441.000000
s ce10.chrX              5300353 7 + 17718866 TGAAAAC
s caeJap4.Scaffold18194   444130 7 +   823664 AGAAAAC
i caeJap4.Scaffold18194 C 0 I 15
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e cb4.chrX              10651417 18 + 21540570 I
e caeSp111.Scaffold527     42509 55 -    90967 I
e caeRem4.Crem_Contig0   2093777 0 -  4500979 C

a score=0.000000
s ce10.chrX              5300360 625 + 17718866  
e caePb3.Scfld02_0       3590768  68 +  4147112 I
e caeJap4.Scaffold18194   444137  15 +   823664 I
e cb4.chrX              10651417  18 + 21540570 I
e caeSp111.Scaffold527     42509  55 -    90967 I
e caeRem4.Crem_Contig0   2093777   0 -  4500979 C

a score=486.000000
s ce10.chrX              5300985 96 + 17718866 GTAAGTAAGGGAGTTCTTTAGCGtaaattataaaaataaaaaataaaataaaatgaatttagtataaaaataaaacataaattttGGCATTTTTCA
s caeRem4.Crem_Contig0   2093777 77 -  4500979 GTGAGTGAGACTATCCTTTTG-----ATTTTATAGACAGATTATGTCATGAAAccag---aatatgaaaa---------aattctgGTGTTGTT--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e caeJap4.Scaffold18194   444137 15 +   823664 I
e cb4.chrX              10651417 18 + 21540570 I
e caeSp111.Scaffold527     42509 55 -    90967 I

a score=161.000000
s ce10.chrX              5301081 13 + 17718866 AAATAGCCAATCG
s caeJap4.Scaffold18194   444152 13 +   823664 AAACGAATGATGG
i caeJap4.Scaffold18194 I 15 C 0
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e cb4.chrX              10651417 18 + 21540570 I
e caeSp111.Scaffold527     42509 55 -    90967 I
e caeRem4.Crem_Contig0   2093854  0 -  4500979 C

a score=180.000000
s ce10.chrX              5301094 1 + 17718866 T
s cb4.chrX              10651435 1 + 21540570 t
i cb4.chrX              I 18 C 0
s caeSp111.Scaffold527     42564 1 -    90967 T
i caeSp111.Scaffold527  I 55 C 0
s caeJap4.Scaffold18194   444165 1 +   823664 C
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3590768 68 +  4147112 I
e caeRem4.Crem_Contig0   2093854 0 -  4500979 C

a score=58179.000000
s ce10.chrX              5301095 241 + 17718866 TTTCAGACAAATGCAACTTGCATTACAATTACGCGGAGAGAAAACCCGATATGCAGATTTTGCAATTGAAAAACAACAAGAACGGCAGAAGGTT-GGTTCT----TTGGGAATTCCATTTTTTT----ATCTCAA---------------AAT----------------------------CAAA---AAT---------------------------------------------AGACCGAGTGAAATATTTT------CCTTTTTCTTTATCTCCGACGTAATTTTTTTTTGCTCTCCT---------------------GACAAAAAATGAAAGAA---------GAAGTAC----AGAAATAG--CGAGTGCAATTTT
s cb4.chrX              10651436 226 + 21540570 tttcagacaaatgcAACTAGCTTCTCAACTTCGTGGAGAGAAGTCTCGCTACGCGGAACTCATGCAACAGAAGCAGATTGAGAGACAAAAGGTTCGGTTTC----TG--------CGCTTTCat----aaatggg-------aaataagaaat----------------------------aaagacaaaa---------------------------------------------gga--aaagaaaataaatcagGCAACGTTTT------------------------CTagctttc-----------------------caaaaaaaatgagaaaa---------gaagtAC---AAAAAACAGGCCGAGCTCAATCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2093854 220 -  4500979 TTGCAGACAGATGCAACTCGCATCACAATTACGTGGAGAGAAATCTCGGTATGCGGAGATGGCGCATCAAAAGCAGCTTGAGCGACAAAAGGTT-GGTC------------------CGTTTAT----AAATCgg---------------aat----------------------------aaag---aaa---------------------------------------------aga--aaaggaaataaatcagacagcttttttttctatttc---------ttctcttttttctc-----------------------tgaaaaaaatgagagaa---------aaagtac----AGGAATAG--CGAGTGCAATCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42565 210 -    90967 TTGCAGACAAATGCAGCTGGCTTCGCAATTACGTGGAGAGAAATCACGGTACGCGGATGCTGCTCTCgagaagcaaaaagaaagacaaaaGGTT-GGTCT------------------GCTCAT----GAAttga---------------aataggaaaa---------------------agaa---aga---------------------------------------------gaa--gaaggaaataaaTCAGACAACGTTT-------------------------TTTGcttt------------------------gacaaaaaatgaagaaa---------gaagtaC----AGAAATAA--CGTGTGCAATCCT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3590836 222 +  4147112 TTATAGACAAATGCAGCTGGCATCGCAATTACGGGGTGAGAAGACGCGGTATGCGGACGCTGCTCTTGAAAAGCAGAAGGAAAGACAAAAGGTT-GGTCTT----------------CGCTCAT----AAATCGa---------------aat----------------------------aaaa---gga---------------------------------------------aaa--ggaggaaataAATCAGGCGACGTTTT--TCTACGTC---------tta--ttcgtttttca-------------------gaaaaaaaaactaaaagaa---------aaagtac----agGAATAG--CGGGTGCAATCCT
i caePb3.Scfld02_0      I 68 C 0
s caeJap4.Scaffold18194   444166 370 +   823664 TTTCAGACAAATGCAAATGGCTGCACAATTGAGGGGAGAAAAAACGCGATATGCGGATTATGCAATTGAGAAACAGAGGGAAAGACAGCAGGTT-TGTATAAATATCTAAAATAGTTCTATCACGGTaaaaacgagtaaaaaagagaaaaaatgccgaaaatttttattttcgccacTGTGGAAG---AGTTTTCCATAACGTTAGTCCTTGTGagacttcttccacggccattccaaa--aacaaaaacaattt--ttaacgaatttcgttatttttgtcactattt---ttcgcattttttaaagtaaaaatgTGTACCGCTCtaaaaattgggagaaattagcaataaaatattatttgaaacaa--taaataaaatttt
i caeJap4.Scaffold18194 C 0 I 107

a score=19815.000000
s ce10.chrX              5301336 82 + 17718866 TTTGTTCTCGAGTGTGCGGCTTCTTCCTTCTTACTGCGTTTTTTTGGCGCAGCGAGCATCAAAAATCAG----AAATTCTTTTCTG
s cb4.chrX              10651662 78 + 21540570 TTTGTTCTCGAGTGtgccgtttccgttttccttcaat-ttttcctttttcacaaTGCATCAAGAATCAGAAACAAAGTC-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094074 70 -  4500979 TTTGTTCTTGA--GTGccgtttcctttttc--------ttctccgagTTCTGCACgcatcaaaaatcag----aaaatc--ccCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42775 67 -    90967 TTTGTTCTCGA--GTGCCTTTTTC--CTGc--------ttttctgagttttttatGCATCAGAAATCAG----AGAATT---CCCA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3591058 69 +  4147112 TTTGTTCTCGA--GTGCcgtttccctcttt--------ttttttgagtttcacaaGCATCAGAAATCAC----AACATT---TCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   444536 107 +   823664 I

a score=144745.000000
s ce10.chrX              5301418 316 + 17718866 TTTAGGTCCTGAACATCGAAGCCAGAATCAACCGAATGAAAATCAATTTGACGGAGGCTCAAGCGGTCGCTGACACATTGGATGAACAGGCGTTAATGGAAAAATTAGAGGTTACTAGACTTATTTTTCTCGTCTTCTCCTATCTAATGACGACAGAGGGTTTCT---TAGGACGAAGTTGCGACGAACACTTACTTAGTGAATGGCAAGTTGTTTCAAGAAATTGAATCAAAGGAAAACAAGTTGAAAGAGCTGACAGCCATGGCAAGGTCCAATTCAGTGCGGGAAGAGGATGTCAGTAGAATGAATTCTGAGGTAA
s cb4.chrX              10651740 293 + 21540570 TTTAGGTGCTGAACATTGAGTCCAGAATCAATCGCATGAAAATCAATTTGAGTGAGGCTCAAGCGGTCGCCGACACGTTGGACGAACAAGCACTAATGGAAAAATTAGAGGTATTTGG-----------TCGTCGGTTCCGTTTTCTGATTAATTAGAGTTTTCC---TAGGACGAAGTTGCAACAAATACATTTCTGGCAAATGGAAAATTGTTTAATGAGATTGAATATAAGGAGAACAAGCTTCGAGAGTTGATAAACAtggcaaattcaaattcagtaACAGAAGAggatttacagaaaatga------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094144 296 -  4500979 TTTAGGTGCTGAACATTGAATCGAGAATCAATCGcatgaaaatcaatttgaatGAGGCTCAAGCAGTTGCCGACACGTTGGATGAACAAGCACTAATGGAAAAATTAGAGGTTActgg--------ttttcttcttttttattttcttttctaatgAGAAAGTCT---TAGGATGAAGTTGCAACGAACACTTATTTGGTAAACGGGAAGTTGTTCCAAGAGATTGAGACAAAAGAGAATAAACTGAGGGAACTGTCAACAATGGCAAGATCAAGTTCGGTGAAAGAAGATGATATAACGAGAATGA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     42842 305 -    90967 TTTAGGTACTGGCAATTGAGGCGAGGATCaatcgaatgaaaataaatttgagtGAAGCTCAATCGGTCGCCGACAGATTAGACGAACAAGCGTTAATGGAAAAACTAGAGGTTTTTGA--------TGTCTGACAGAT---TGGCAACGTTAATTATGGTTTCTT---CAGGATGAAGTCGCAACGAACTCTTATTTGGCAAATGAAAAGCTTTTTAATGAgattgaaacaaaagagaacaaGTTGAAAGAGTTGTTCAATGTCGCAAGAACGAATACGGTGAAGGAAGAGGATGTTACAAGAATAAATGATGAGGTAA
i caeSp111.Scaffold527  C 0 I 25
s caePb3.Scfld02_0       3591127 220 +  4147112 TTTAGGTGATGGCAATTGAATCAAGAATCAATCGAATGAGAATCAATTTGAATGAGGCTCAAGACGTCGCTGATAGGCTCGATGAACAAGCGTTAATGGGAAAATTAGAGGTTttaaa-----------ctggaattt---ttttagttctcaacagggttttttt-ccaggatgaAGTCGCCACAAACAGATATTTGGCGGATGAAAAGCTC---------------------------------------------------------------------AAGGAGGAG------ATCAgaatgaaaa---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   444643 299 +   823664 TTCAGGTTCTACAACTCGAAAGCATTATCAATGGAATGAAAATCAAACTGAGCGAAGCTCAAGATGTTGCCAACACGCTCGACGAACAGGCGCTAATGGAAAAATTAGAGGTTTCTGA--------CCTTTtacttat---ttttattt---------gttttcttattAGGATGAAGTGGCGACCAACACATATTTGGCAAATGAAAAGTTGGCAGTCGACTTGTTGACCAGGCAGAACAAGTTGAAAGAGATGGGAGCAATGATTCGGTCAAGTTCAGTTAAAGATGAGGATATCAAAAGGATGAATGAAGAGGTGA
i caeJap4.Scaffold18194 I 107 I 464

a score=-24823.000000
s ce10.chrX              5301734 208 + 17718866 GCTTAAAGATACCAGGCTTAAAGATCTCTGCAGATTTAACTTTGGGGAATTTTATGATAAATGTGCAGCCGACAGTA-TATATGCAACACTGACCTCACGTTTTAATTAAATTACCATTAAAAAAGGAATTAATGCTATTGGAGCACGGCTACTACACAGATACGTTGCCCgaaatacaaaatttcgaaagcaagttgttagcgaaaat-----
s cb4.chrX              10652033  98 + 21540570 --------------------------------------------------------------cCGAAGATGTGAGTAGATTGTGAAGCAGTC---------TTTAACTG-------ATTTACaga---------------------------tttcattcttttttt-----atatgtatatgtctttatat------tttaacacatgtcctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094440  56 -  4500979 --------------------------------------------------------------CGGAAGAGGTGAATA----------CAATC------------AACT---------TTCACGG------------------------------------------------AAATAgatatttatcaaaat------ttagA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3591347 149 +  4147112 cattcaaattatCAGAGTTTCAAAGTCTCTCA--------------------------AAGTCTGATGTAGTCAGTA----ATGAAACACTC------------AAGTT-------CCTAACGGGAGAGGTAA-------GTAGAAAagctttttcattgttttttt----ccaagaaacatTTTCGCAAATCAGtgataagagaaaag-----
i caePb3.Scfld02_0      C 0 I 86
e caeJap4.Scaffold18194   444942 464 +   823664 I
e caeSp111.Scaffold527     43147  25 -    90967 I

a score=-5905.000000
s ce10.chrX              5301942 100 + 17718866 taaaagttttagcgggaacttcaaattttctgggaaaaaaatttggcgaaaaatttaagtattccgaaaaattttttcgcggaaattaaaattttctcgg
s cb4.chrX              10652131  58 + 21540570 --tatgtct----------------ttttCT-----ACAGCCTCGTCCATTGCATGAAATACC-------------------AGacgattattttttcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094496  27 -  4500979 ------------------------------------AGAGCGTTAGCTATAAAATTAGGAAGC-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3591496  86 +  4147112 I
e caeJap4.Scaffold18194   444942 464 +   823664 I
e caeSp111.Scaffold527     43147  25 -    90967 I

a score=-39914.000000
s ce10.chrX              5302042 299 + 17718866 gaatttttttctgtgggattttcaa---attttctaggaaaacaaacttggcaataaagtttttctgaaa---aaaatt-ttg---ataggaaattcaaattttttgtaaacaaaaattagcgggaaTAAAAACTACAT---TGATGTTAAAAAACTGCTAGAATGATTTTGCTATTTTTGAAAATGT-------------ATACCAAATTTAACAAA----AAAAAACATCCAAAATAAAATTGTCGCCCAGCTTAAACGTGGCTGCACTTTTCACTTATTTCCAAGGTGATTA-------------------------CAAAATTAAATGATGTAATTACAGAAAAAAGTTG
s cb4.chrX              10652189 158 + 21540570 ----------------------------agtttttgatacgCATGacttaaaaagaaa--------aata--taaagcT-ATG---AAGAGCAGGtaa----ttttg------aatctt----tgaaaaaaaactactcgTTTGAATTTGATTAG--------------------------AAAGTGT-------------------AAATTAGCACAGTGCAGAGA----------------------------------------------------------------ATTA-------------------------GAATATCTGT----GTTTTTTG-TGTGACACTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094523 231 -  4500979 ----------------------------CGTTTTTGTCATGTCTGAGATAAAGTTAAG--------AATATTTATAGTTCGTGGGCAAAAACACGTCA-----TATG------TAGATC----AGAACACAAATTAGGCATTGGGTATTAACCAGT---CTGGGt------------tctaaaaatgtgtttttg----------aaaactgagcAGACTGTACATAGGAATAATAA----GGAATCTTTCCATTGATACC--GGTGGGCA--TCAT------CTGAC---ATTG-------------------------GAATGTGTGA----GCACTTAGAGGAAACGCTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3591582 286 +  4147112 GAAACTCTTTCTG-----ATTTCgatccatttcttttcaaaactagcctggggtcaaa--------aaaa---aaagctgata--------tACCTCA----------------CAATT----GGAGTGAAAAATTGGC-TGCGATGTTCAGAAGTTCACTGAGTA-----------TTTCGGAGCGTTCTCTTGACAGAAACATAGAGTTTAATACATCACGACAAACACGAAAACTTTTGGAGCCTCACTGTTAAAACCATATCTGACATTTCAT----TCCTAAC--AATTATTCTTGTTCTAGGGTTGATGGGAACAAATACCAAA----ACCTCGAGATAAAAAACT--
i caePb3.Scfld02_0      I 86 I 2
e caeJap4.Scaffold18194   444942 464 +   823664 I
e caeSp111.Scaffold527     43147  25 -    90967 I

a score=25366.000000
s ce10.chrX              5302341 156 + 17718866 TATGTTTTAAGAGTTAAAAGCTATTCAAAAGCTTTTTTCAAA-CGTGGGCAAAAACAAATAACAGAGCCAAAGAGC--------GAAACAATGGCTTCAGACGTCAGAG---AGACG---AAAAAA-TTTTCCAATTT--TCGTCTGACCA--AAAATATGTTAATTGTTTACTC-C
s cb4.chrX              10652347 136 + 21540570 TCtgtt----------aaaatga----------------aatttgggGATGAGCACCATAGTAAA------CTAACTTGTCCTTGAAACAATGGCTTCAGACGTCAGAC---AGACGTCAACgaaagttttctaattt--tcaactaCCC--TCAAATATGTTAATTGTTTACTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2094754 139 -  4500979 TTTGTTGTCGAACTTGAAAACGA------------TTTCAAGTCGTGGGTGGGAACAAATGAAAA------TAGGA--------GAAACAATGGCTTCAGACGTCAGAC---AGACGTCAACGaaa-tttcctaattt--tcaaatgCC----CAAATAAGTTAATTGTTGACTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     43172 143 -    90967 TGTGCTTCTGAACTTGAAAAGTA------------TTTTAAACCGTGGgcgaaaacaaataaaac------aaaaa--------gacgCGGTGTCTTCAGACGTCAGAA---ATACGCTCATAGAG-CTTCCTAATTT--CCAACTCACCA-CCAGACCCGTTGATTGTTTACTAC-
i caeSp111.Scaffold527  I 25 I 31
s caePb3.Scfld02_0       3591870 152 +  4147112 GGAAGGTTCAAACTTGAGGCGCA------------TTTTAAG-CGTAGGCAAGAACATGTGAAATGACT-AAAAGC--------GAAACAATGGCTTCAGACGTCAGACGATAGACGTCAACGAAA-TTCCCTAATTTTACGAGTGCGCCACCCAAAGAAGATAATTGTTTACTC--
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194   444942 464 +   823664 I

a score=-3079.000000
s ce10.chrX              5302497 19 + 17718866 CAAGTCATCT-TAAACATGG
s cb4.chrX              10652483  9 + 21540570 -TAAACGTTG----------
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   2094893  9 -  4500979 -AAGCCCTTT----------
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3592022 10 +  4147112 -GACCCCTCTT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   444942 464 +   823664 I
e caeSp111.Scaffold527     43315 31 -    90967 I

a score=-806.000000
s ce10.chrX              5302516 19 + 17718866 ---CTGATCAAAGCATGAAAGA--
s caeRem4.Crem_Contig0   2094906 19 -  4500979 ---CTAACCAAAAGACcaaatc--
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       3592032 17 +  4147112 GGTCTAA-------ATTAAACcca
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   444942 464 +   823664 I
e cb4.chrX              10652492 34 + 21540570 I
e caeSp111.Scaffold527     43315 31 -    90967 I

a score=1927.000000
s ce10.chrX              5302535 8 + 17718866 GTTATTTT
s caeRem4.Crem_Contig0   2094925 7 -  4500979 -ctatttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     43346 7 -    90967 -tttcttt
i caeSp111.Scaffold527  I 31 C 0
s caePb3.Scfld02_0       3592050 7 +  4147112 -ttccttt
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194   444942 464 +   823664 I
e cb4.chrX              10652492 34 + 21540570 I

a score=1838.000000
s ce10.chrX              5302543 7 + 17718866 TAAATTC
s caeRem4.Crem_Contig0   2094932 7 -  4500979 tcaagtt
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527     43353 7 -    90967 ttaactt
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3592057 7 +  4147112 ttgattt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   445406 7 +   823664 TAAACTA
i caeJap4.Scaffold18194 I 464 C 0
e cb4.chrX              10652492 34 + 21540570 I

a score=80856.000000
s ce10.chrX              5302550 93 + 17718866 AT----CATTCAGATAGAGGAAATGTCAAAACGAATTCGAAAACTAGAAGACGAACGGGATCACAAAGAAGTGGATATTGATGAGAACATGAGGTAA
s cb4.chrX              10652526 93 + 21540570 aa----ttttcagatcgaagaAATGAGGAAACGAATTCGCAAGCTAGAAGATGAGAGAGACCACAAGGAAGTGGATATAGATGAGAACATGAGGTCA
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   2094941 93 -  4500979 TA----CTTTCAGATTGAGGAAATGACAAAACgaattcgaaaacttgaagaCGAGAGAGATCACAAAGAGGTTGACATTGACGAGAACATGAGGTCA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold527     43361 93 -    90967 ag----ttttcagattgaGGAAATGTCTAAGAGAATACGGGAGCTCGAGGAGGAGCGAGATCATAAAGAAGATGATATAGATGAAAACATGAGGTCA
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3592065 97 +  4147112 ggtcttttttcagttggaagaAATGACAAAACGGATTCGAAAGTTGGAGGATGAACGAGAGCACAAAGAAGTTGATATAGATGAAAACATGAGGTCA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   445413 92 +   823664 -----ATTTGCAGATTGAAGAAATGACAAAGCGAATCCGGAAGCTGGAAGATGAAAGGGACCACAAGGAAGTGGATATTGATGAGAATATGAGGTAA
i caeJap4.Scaffold18194 C 0 I 260

a score=9914.000000
s ce10.chrX              5302643 220 + 17718866 GTGCAT-GCTCATTTTGGT---CTAGATGTTTTAAAATTGTGCTTGC------------------------TGAAAATTT-------------------------------------CAAA-------------TTTG-----------TTGTTGTGTTCTTTGTGCAAAAAATA----TG--AAAT-CTGGTCTGGTTGCTAATGA-----ACAAGGAAAGGCAAATCT-AAAAGCGGAC---AGTGGCATCACTCG--------GTTTAAA-----------AACATGTGGATGATGATGGTTGCTGCTAAGAGACACAATCTGCGTAT--TCTTCTATGA-------GTG
s cb4.chrX              10652619 252 + 21540570 GTAAATCCCTTATTTAGC----------ATTTTGTTGTTGTGTTAG------------------AGCAC--TCAATGATG---------------TGCcacagagaaaaaagg----agaa-------gagatgTTTA-----------TCGTTGTTTTACATGCGCATAAATTTGCT-CTCAAATC-GT----TGGTTGCTAATGAAAAAGACgagacaaaa--------aaaagcgaaag--aGAAGAATCACAAGAGTcttaaaggaaaa---------aaggaatggTGATGATGACGA----TGCTCAGGGGCACAATAtgtgctc--ttctttttttctgattg---
i cb4.chrX              C 0 I 1053
s caeRem4.Crem_Contig0   2095034 240 -  4500979 GTAATTTGCTCTTTTGGCt------tttatgttgtttttgtGTCGGC------------TCGCAAATGC--TAAATGA-----------------------GGAAAAAACCAG----AGAAGCCAAGGGCGATGTTCATCAT----GCGTCGTCGTTTCAGATGTGCATAAATTTGCG-TC--AATT-G-----CGGTTGCTAATGa-----acaagacaaaa--------aaaagaggaag--aagaaaatcatGGG--------ATGGAAT---------GGGGGGAAATGGTGATGACGA----TGCTCAGAAGCACAATATGCGCGC--TTttc---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     43454 265 -    90967 G------ATTCTCTTTGTTGTGTCGTTTTTCTAATCTTCTTATGCGC------------------GAATTGTGAAGGCTCGCAACAAAATCTGAATGCT--GGAAAAAGCGGGGAAAGGAA-------GATTTGTTCGTCAT----GGCTCGCCGTTTCTTGTGTGCATAAATTTGCGTTG--AATTGG-----CGGTTGCTAATGA-----ACAAGACAAGAAATGGCA-AAAagcggaag--aagaaaatcacgag--------atgagag-----------aagaaaatgatgatgacga----tg---GGGGGCACAATATGCGCgccttttctcttta----------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3592162 292 +  4147112 GCAATGTGTTCTTTCTGTTATGTTGTGCTTTTTGTTGTGGTGGCCGTGGTTGGAGGGACTCAAAAGAat--tgaatgttgaaaaaaatgcccgTTTGT----------GTGGG----GGAA-------GATTTGTTCATCATCATGGGCTCGTCGTTTCAAATGTGCATAAATTTGCG-TG--AATT-G-----CCGTTGCTAATGA-----ACAAGACaagaaatgggagaaaagcggaagaaaagggaatcacgag--------atggaagaaaaaaagggaaagaaaatgatgatgacga----tgctCAGGAGCACAATATGCGcgc--tttttcttta----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   445505 260 +   823664 I

a score=-4722.000000
s ce10.chrX              5302863 75 + 17718866 TTAGATATTTATTTAGAAAAGAAAATGAATTTGTAAGGGATGCTTCGACAAAAA--ACtttaaatttttttatcatt
s caeRem4.Crem_Contig0   2095274 18 -  4500979 cttcacttttttct--------gatt---------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 126
s caeSp111.Scaffold527     43719 49 -    90967 --------tttttt--------gattgaat--------gtCGCATTGTCAAGTGCTCCTTTGA----TTCTCTCAtt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3592454 47 +  4147112 --------tttttt--------gattgaat--------gtCGCATTGTCAAGTGCTCCTCTGA------CTCGCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I

a score=-3030.000000
s ce10.chrX              5302938 242 + 17718866 attaaaaataatGAAAGTAGTGTATCTTTATTGCGGATTTCGT---------CTTAAGACACATAATTAACATGACCGAATATGAGCATAATACTCTCAAAACTAAAAAAAAGATTTTTAAAAATTTTCTGAATTATAACTAAAATTTGAAAACTGTG-GAACAAATTTTTGTTGACTTTCATTATTAGGACGGAGTTTTTACCATTTTTTGACTGCTCGGAAAATTGTCCTTTTTAGAATACTTCCACTAT
s caeSp111.Scaffold527     43768 169 -    90967 cagagaaatgaaga---------------------gattttGTGAAGAGGAAATTCAGACG-------AGGATgacggaaaaagag-atag------caaga--gaaaatgggaatgTTAATAAGACCAAGAATCAT--TGGGAA---GCAACACATTTAAATGAATTACAGTAGGCTTAGA----AACGAG-GAAATGTTGCTAAT------------------GTGTACTTT------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3592501 170 +  4147112 CAGCGAAAAG-------------------------GATTTTGTGAGGAAGAAACTCAGACA-------AGAATGACGG-AAAAGCG-ATAG-------------GGAAGAGGAAATGTTAATAAGGTCAAAAATCGT--CTAGAAGGGGAGGAGCGTGTAAATGAATTACAGTAAGGTTTGA----TTGAATCGGACTTTTACTAAtt------------gaaaagtgcaatttt-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I
e caeRem4.Crem_Contig0   2095292 126 -  4500979 I

a score=-22716.000000
s ce10.chrX              5303180 148 + 17718866 GATATTTGGTAATTTT--AAATTTATTTGGGTAATGTTTAAACAAATA-CCCACTGACGGTAATCCCTCTTTAATACGCTCAATATAGATCCAAGGTATTTAACTTCCTAGTTTTTTGTCACTTGTT------------TTTTTTTAACTCGGCATTTCTAGA
s caeRem4.Crem_Contig0   2095418  63 -  4500979 ------------------------------------gacatttgaaaaactcacttcc-gcaatttttaaccgtttttataaatatag---------------------------------------------------atataaaactaa------------
i caeRem4.Crem_Contig0  I 126 C 0
s caeSp111.Scaffold527     43937  71 -    90967 ------------------GAGCTCGTTTGATCAGTCTTCAGTTAAAGAACCCATAGG-----------------------AAACATGC---------------------------------------------------ACATGCAAGGAAGACACTTTTAAA
i caeSp111.Scaffold527  C 0 I 3
s caePb3.Scfld02_0       3592671 150 +  4147112 --tGTCTGTTGGTTTTAGTAACTGATTGGATGAGTTGACTCATAAATACCCCAGAGG---------TTAATTGTGATC-TATGCTTGCTGCCCGTGT-TTTGGGTTCTTGaatctgtttcgaaattcagaattcccaATACATTCAACCTCGTCATATTTTAT
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I

a score=-711.000000
s ce10.chrX              5303328 44 + 17718866 GCATTTCAAGCAAAACCAG----GTGATGAACTTAAAACTTGTGAAAT
s caeRem4.Crem_Contig0   2095481 32 -  4500979 aaattccGAACACAATCAC----AAGCTCACTTCAA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3592832 42 +  4147112 accttcaaaaaaaaattatgttagGGTTCATATcaa------tgaaat
i caePb3.Scfld02_0      I 11 I 65
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I
e caeSp111.Scaffold527     44008  3 -    90967 I

a score=-821.000000
s ce10.chrX              5303372 60 + 17718866 TGCGTTTATCGTATTTTTCCTATACGTAAAACATTAGAATATCTTTTTTTATATTTTCCC
s caeRem4.Crem_Contig0   2095513 32 -  4500979 ------TAACATACATTTT---TGTGGCAAACGAAAAAATA-------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3592874 65 +  4147112 I
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I
e caeSp111.Scaffold527     44008  3 -    90967 I

a score=0.000000
s ce10.chrX              5303432 2 + 17718866 AA
e caePb3.Scfld02_0       3592874 65 +  4147112 I
e caeJap4.Scaffold18194   445505 260 +   823664 I
e cb4.chrX              10652871 1053 + 21540570 I
e caeSp111.Scaffold527     44008 3 -    90967 I
e caeRem4.Crem_Contig0   2095545 0 -  4500979 C

a score=91.000000
s ce10.chrX              5303434 1 + 17718866 A
s caeJap4.Scaffold18194   445765 1 +   823664 A
i caeJap4.Scaffold18194 I 260 C 0
e caePb3.Scfld02_0       3592874 65 +  4147112 I
e cb4.chrX              10652871 1053 + 21540570 I
e caeSp111.Scaffold527     44008 3 -    90967 I
e caeRem4.Crem_Contig0   2095545 0 -  4500979 C

a score=215466.000000
s ce10.chrX              5303435 477 + 17718866  
s cb4.chrX              10653924 518 + 21540570  
i cb4.chrX              I 1053 I 191
s caeRem4.Crem_Contig0   2095545 452 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold527     44011 470 -    90967  
i caeSp111.Scaffold527  I 3 I 11
s caePb3.Scfld02_0       3592939 480 +  4147112  
i caePb3.Scfld02_0      I 65 I 11
s caeJap4.Scaffold18194   445766 541 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-4453.000000
s ce10.chrX              5303912 21 + 17718866 -----------ATTTGTAACAGTA---TAATACTA
s caeRem4.Crem_Contig0   2096003 15 -  4500979 -----------atttttaat-gtaCCA--------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold527     44492 12 -    90967 -----------aaatttaat-gTA-----------
i caeSp111.Scaffold527  I 11 I 2
s caePb3.Scfld02_0       3593430 13 +  4147112 -----------ATAGTTAATGGTA-----------
i caePb3.Scfld02_0      I 11 I 2
s caeJap4.Scaffold18194   446307 20 +   823664 ATTGGCAGAgcatatttatt---------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10654442 191 + 21540570 I

a score=113035.000000
s ce10.chrX              5303933 164 + 17718866 ----------------TTTTTTCAGTACCGAAAATATTTAGAGCAATACCGTGTGAAAAGTGAAGAACAAAAAAAGAAAAGGAAGGAAATTGAGTTGATGCATACCGAGGTGGCAGTGCTTAAAAGAACAATTGACATTGTTTCCAAAAGATACAATAAATTGGAAACGCACATTGTGAG
s cb4.chrX              10654633 164 + 21540570 ----------------ttttttcagtaccgCAAGTATTTGGAGCAATACAGAGCAAAAAGTGAGGAgcagaaaaggaaaagacTGGAAGAGGAACTCACTTATGCTGAGAAAGGCGTTCTCAGTGGTACTGTGGATATACTTTCGAAAAGATTCAAAGAACTAGAGTCTCATATTGTAAG
i cb4.chrX              I 191 C 0
s caeRem4.Crem_Contig0   2096018 163 -  4500979 -----------------TTCCGCAGTATCGAAAACATTTGGAGCAGTACCGGGTCAAAAGTGAGGATcagaggaagaaaagaaaggaaatggAAATGATGCATACCGAGAAAGGAGTGCTTAGCAGAACGGTGGATATTCTTTCAAGAAGATATAAACAATTGGAGAGTCATATTGTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     44506 164 -    90967 ----------------TGGTTTCAGTACCGAAAGTATTTGGAGCAGTATCGGGTGAAAAGTGAAGAGCAAAGAACacggagaaaagagatggaCTTGATGCATACAGAGAAACAAGTGCTCGGCAGAACTGTTGAGCTTCTTTCGAAACGATATCAAGAGTTGGAAACACATATTGTGAG
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3593445 164 +  4147112 ----------------GGCTTTCAGTATCGAAAGTATTTGGAGCAATACAGAGTAAAAAGTGAAGAGCAACGGAAcagaagaaaggaaatggaCATGATGCACACAGAGAAACAAGTTTTGAGCCGAACTGTGGATATACTTTCACGGAGATATAAACAACTCGAAACACATATTGTAAG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   446327 180 +   823664 ttcaataaaaattgagcttTTTCAGTACCGAAAATACTTGGAGCAATACCGCCAAAAGAGTGAAGAGCagcgaaaaaaacgaaaagaaatgGATTTCATGCACTCTGAAAAGGGAGTGTTGAAGAGAACTGTCGACATTCTTGTGCAAAGATATTCAAAGTTAGAAACTCATATTGTGAG
i caeJap4.Scaffold18194 C 0 I 18

a score=-3009.000000
s ce10.chrX              5304097 10 + 17718866 TTGCGTGATT
s cb4.chrX              10654797  2 + 21540570 TT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2096181 10 -  4500979 TAGAGCAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     44670 10 -    90967 TGGCTTGTTT
i caeSp111.Scaffold527  C 0 I 283
s caePb3.Scfld02_0       3593609  9 +  4147112 TAGCACAAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507 18 +   823664 I

a score=-1666.000000
s ce10.chrX              5304107 14 + 17718866 -----GTTGAGTTGAATGT
s caeRem4.Crem_Contig0   2096191 15 -  4500979 ----CTAAGAGTTAAACAT
i caeRem4.Crem_Contig0  C 0 I 269
s caePb3.Scfld02_0       3593618 14 +  4147112 GTTTCTCCAAATAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507 18 +   823664 I
e cb4.chrX              10654799  0 + 21540570 C
e caeSp111.Scaffold527     44680 283 -    90967 I

a score=-3108.000000
s ce10.chrX              5304121 108 + 17718866 TGAATAGAAAAAAAAACGCGAAACGGCAAAAATATATTTT--GGAATTCTTGAAGTTTTTAGTGATCTTTTTCCAGATAGCTGTTTAATAATGAAAAA------AAAACT----ATTTGT---
s cb4.chrX              10654799  84 + 21540570 ------------taattgggaaaaaatagaagtgtAAATTTCGGAAGTTCTGGA---TTTAAAAATCTTTGTGAAAAT-----------------AAATCTGTCAAACCT----ATTTTT---
i cb4.chrX              C 0 I 179
s caePb3.Scfld02_0       3593632  93 +  4147112 TGTGTGGAACATTGATCGATCAACGATGAGAGAGTGTGTT-----------------TTTAGAATCGTCTATTGTAAC-------------CGGAAAACTGGTCAGAacgcaaaatttttggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507  18 +   823664 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-2174.000000
s ce10.chrX              5304229 244 + 17718866 GCATTATCAACATCA--------AACTTTTAAATGTATCAGATACCTCTGCTAACATATGGCAGTTTATGTAATCTCTCACTGAATTATAATAGCA--AAATTTCATTCAAATG--TATTTGTAGTTACGGCAATCGCTGTTTGATATTACCCAATTGTCGATTGCCAAGCATTTTTTGATTAAAAATGCTGATTGTCAAAAATTAGAATTGCCGAAACTGTGATGATTTTCTACAGTGCTGCGTATGGTAACATA
s caePb3.Scfld02_0       3593725 187 +  4147112 tttttgttcatatcGTTTGCTACAACCATTGAA----------ACTcctg----aaaatggt--tttaaaACATGCCTCAC--------GATAGAAGTATATTTCAAACAATCGAAAATTATGAGCCACTG-AATACTTGTGCGATGTTTCATCAAAGTACATGGT----CTTGTTTCGActaaaaaaact-----------------------------------atttccttC--TTCAGCGTATGGT---GTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507  18 +   823664 I
e cb4.chrX              10654883 179 + 21540570 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=749.000000
s ce10.chrX              5304473 6 + 17718866 TTTACA
s cb4.chrX              10655062 6 + 21540570 tttgaa
i cb4.chrX              I 179 C 0
s caePb3.Scfld02_0       3593912 6 +  4147112 TTTacg
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold18194   446507 18 +   823664 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-290.000000
s ce10.chrX              5304479 33 + 17718866 AACGCTTAACGATACTGATAGAAATAATCACCA
s cb4.chrX              10655068 21 + 21540570 aatatttcaca--actaatgaaa----------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3593918 15 +  4147112 I
e caeJap4.Scaffold18194   446507 18 +   823664 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-9354.000000
s ce10.chrX              5304512 196 + 17718866 TTTTTAATTTATTAAATACGTTAACTGCATAAAATTTGAACTTATAATTTTAATTACTTTCCTATACCTCCTGGAATCAGAGAACAAATTCGACCAAGCTCCGCGAATCATTTTTTTCACCATTGTTGCAGAGAGAATAAACAGTAATTCACTTTTTTGCAAACTACTTCCAGCAAGATCAAGTGGTAGGATCAAA
s cb4.chrX              10655089 146 + 21540570 -tgtatGGACTTTAAGTTGACGGCTTAG-GAGCATTTTATCAGA-GACATAAACGA---------------------CAGACcgtaaata--------ttcaaaaaatgaagattgcaaaaattc-------ggaatcggAAAGTAattt----------aaaagattttcaaatatggCCAACTGTAGG-TCAAA
i cb4.chrX              C 0 I 44
s caePb3.Scfld02_0       3593933 120 +  4147112 ttattagttttttgatttcactgattgc-cataatttACACTGA-GAGTTTGCCT---------------------------------TC--------TTCCAAAGATCACAATACCAATTCTTG-------GTAAACAGGTA-TAATTT-------TACAAAACAAACtcagatttt------------------
i caePb3.Scfld02_0      I 15 C 0
e caeJap4.Scaffold18194   446507  18 +   823664 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-974.000000
s ce10.chrX              5304708 58 + 17718866 GCAGAAAAAACGTGTGTCATATGTATTTACTCACACCTTTTTCTAAACTACTTTGCTA
s caePb3.Scfld02_0       3594053 19 +  4147112 ----aaaaagtttgcATTTCATG-----------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507 18 +   823664 I
e cb4.chrX              10655235 44 + 21540570 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-3018.000000
s ce10.chrX              5304766 77 + 17718866 CACGAAATTGACAC-ACCTCTCCTATTTCAACAGACAAAACATGTAACAGT-----TTAATATCATATTTCAAAGTTTACTAA
s cb4.chrX              10655279 83 + 21540570 CACAGAATTATCGCGACCCTCTGAACCTCAATAaagaattaccgtaaaaattctcgcaaataacataaatcaaaaaatcctaa
i cb4.chrX              I 44 I 49
s caePb3.Scfld02_0       3594072 30 +  4147112 --CAACATTGTCAA--------------CAATATCGAGTT----------------CAAGTA---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507 18 +   823664 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-620.000000
s ce10.chrX              5304843 51 + 17718866 TCCAAATTATTTTTATCCTGCGTTCCCGATTTTGCAAGATTTCTGTGGTTT
s caePb3.Scfld02_0       3594102 39 +  4147112 TTCAAACT---------TTGTGTGTTGAACTGCAAAACACTGCTCcga---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446507 18 +   823664 I
e cb4.chrX              10655362 49 + 21540570 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=159.000000
s ce10.chrX              5304894 4 + 17718866 ATGT
s caeJap4.Scaffold18194   446525 4 +   823664 ATTT
i caeJap4.Scaffold18194 I 18 C 0
e caePb3.Scfld02_0       3594141 0 +  4147112 C
e cb4.chrX              10655362 49 + 21540570 I
e caeSp111.Scaffold527     44680 283 -    90967 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-1022.000000
s ce10.chrX              5304898 11 + 17718866 GTCTATCTAAT
s caeSp111.Scaffold527     44963 11 -    90967 GTCcctcatgt
i caeSp111.Scaffold527  I 283 C 0
s caePb3.Scfld02_0       3594141  3 +  4147112 --------act
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   446529 11 +   823664 GTATAACGAAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10655362 49 + 21540570 I
e caeRem4.Crem_Contig0   2096206 269 -  4500979 I

a score=-2232.000000
s ce10.chrX              5304909 4 + 17718866 -CTTA
s caeRem4.Crem_Contig0   2096475 3 -  4500979 --CTA
i caeRem4.Crem_Contig0  I 269 I 1
s caeSp111.Scaffold527     44974 3 -    90967 --ttt
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3594144 3 +  4147112 --cta
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   446540 4 +   823664 TTCT-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10655362 49 + 21540570 I

a score=88551.000000
s ce10.chrX              5304913 148 + 17718866 TTTCCAGGAAAGTATTGGCGGAGAAATAGTAGAAGTTTTGAATGTTCCAACGAAATACGATCGTCCGAAAACTGCAGCTCCGCAAACAAATAATGCAGAGGTAAGA---TAGGG-----GGGTTTTT-----TTT-----------------------TGAAGAA-ACTGACTAAACT----CTTGG-----------------TT
s cb4.chrX              10655411 185 + 21540570 ttttcaggagAGCCTTGGCGGTGAAGTGGTGGAAGTATTGAATGTTCCAACGAAATACGATCGTCCAAAAACTGCAGCTCCGCAAACAAACGATGCCGAGGTGAGGGATtaaaagttttggatttcgagAACTTT----------AGAGAAAGACTTTTGAAAGA--CACACtaaacc----atttt---tgaaa--gtcaaaACT
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig0   2096479 190 -  4500979 TTTTCAGGAAAGCATTGGCGGTGAAATAGTAGAAGTTTTGAATGTTCCAACGAAATACGATCGTCCAAAAACTGCAGCTCCGCAAACAAATAATAGCGAGGTGAGA---TAAAAGTTTTGGATTTCG---ACTTTTGCAAAACGAAGAGGCGAAAATTTGAGAGG--C-TTCGAACTG----ACTGT---TCAAATGTTTAAAACC
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527     44978 182 -    90967 tttccaggaaagCATTGGCGGCGAAGTGGTGGAAGTTATAAATGTTCCTTCGAAACATGATCGTCCGAAAACTGCAGCTCCACAAACAAACAATATTGAGGTGAGA---TGGAAATTCTAGATTTCG---GGTTT-GCag--------gaaaaata--tgaaaagaacAAACTAAACT----GTTCG---GGAAGGCAGTAAAACC
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3594148 190 +  4147112 ttttcaggaaagtaTTGGTGGAGAAGTTGTTGAAGTTCTAAATGTTCCATCGAAATTCGATCGTCCAAAAACCGCAGCTCCAACAACGAACAACAAAGAGGTGAGA---tgaagtttttagattttc---actTT-GCAG-----AGaggaaaatatttgaagagaACAAACTAAACT----GTTCGAGAAGAAGGCACTAAAACC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   446544 159 +   823664 TACACAGGAAAGTATTGGAGGAGAAATAGTAGAAGTTCTGAATGTTCCACAGAAATTCGATCGTCCAAAAACCGCTGCTCCACAAACAAATAATACTGAGGTGAGAGa-tgaaagtattttttttgt---tcttt---------------------tttgaaCTG-GCGGATTAAATTTCGGGTT---------------------
i caeJap4.Scaffold18194 C 0 I 1075

a score=-5781.000000
s ce10.chrX              5305061 136 + 17718866 CAACTTTAATCCAAAAATGTCTCTAAGGTACTATTTTTATTTT-------TTATGTA-ATTGACTGAGACAT-CAAAGTTTTCAAAGTGAG---------------------------------------------TTTGGA---GAA--------TAAG---AGAACATGCAAAAGTTTA------------------------------------GATTCAAAAGAA-----------------------------------AAAGTCGAACG
s cb4.chrX              10655596 172 + 21540570 CGAGTTCAATTTAACAAT-CCACAAGGGGATTAT----ATGTTAGAGGGGTTATGAAGACTTTGACGAACTT-AAA----------------------------------------------------------------AAACGAGA--------CAAG---GGAGAATGAGGAggagcaatttttttgaagttgaagTTCTTCGTCCGGGTTAGCaaaatggaagaaaatta-----------GGATATTC-----------ACATTATTATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2096669 192 -  4500979 CGAGTTCAATTTAACAAT-CCACTGGGGGATTATGTCAATGTT-------TTATGAAGAATTGGTAGGACTT-GAAGGTTT------TGAG---------------------------------------------TATGACAGAAAG--------CAAgtaaagaaagtgaaaaattgtgatgttCTTTGATCGgaacttctctttttcacttagttttttaaaaagaaat---------------atattcTTTCGAGTACTACATGATTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     45160 184 -    90967 CGAGTTCAATTTAACAAT-CCGCAAGGGGATTATGTCAGTGTT-------TTATGAAGAGAATGTGAAGCTGCCAGTACTT------TGAG---------------------------------------------TTTAAAGAGAAA--------Tagg---aagaagtgaaaaatgttAATGTTCTTTGAACAACAACtc------------atgaattcagaagaagtgaaGGGAGAGAAAgtgatattgaa---------aagaaattata
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3594338 210 +  4147112 CAAGTTCAATTTAACAAT-TCACTAGGGGATTATGTCAGTGTT-------TTATGAAGAGTATGTGAAGCTG-AAGTACTT------TGAGtttaaagaaaaatgggaggagaaaaagtgagaaatgttGAAGTTCTTTGAACaagaactcattttttga---aggatgtGAAGTAtttggaagggttttgga---------------------agggttttagaaga-----------------tgaaattctc---------aaagaaaGATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   446703 1075 +   823664 I

a score=97110.000000
s ce10.chrX              5305197 171 + 17718866 ---ATAGTTGTAAAGTTTCA--------AAATTTGAA---TTAAGGACATAAAATCGGATATGAAAGACATGATGGCTGCACTGGATGAACGAAAAGATAAGATAACAGATCAACGGACAAAGA-GAGACGAGGTGAAGTATGTTGTGCAGGTAAGTGACAAC----TTAATTGACAGATTCTGATTGAT-----------------
s cb4.chrX              10655768 176 + 21540570 ---GGAA--AGTATACATTG--------ATACATTCATCCTTCAGGATATCAAATTCGAGATGCAAGACATGATGAGAGCGTTGGacgagagaaaagagagaataaCGGATCAGC-GGCAAGTCAGAGACGAAATGAGAAATGCTTTGATTGTAAGTGACAACATATATAATTGACACCTTTTGATAgat-----------------
i cb4.chrX              C 0 I 120
s caeRem4.Crem_Contig0   2096861 178 -  4500979 ---AGAATTATAATAATTTGGAGAAGATATACATTCA---TTCAGGACATCAAATCGGATATGAAACAAATGATGAATTCATTGGATGAGAGAAAAGATAGGATAACGGATCAGCGGGCAAGAC-GAGAAGAAATGAGACTCATGCTGAGTGTAGGTGACAAC----TTAATTGACA-CTTTTGACTGAt-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     45344 179 -    90967 ---ataataataatgttTCGATGATTATATATTTACA---TTGAGGACATCAAATCGGATATGAAACAGATGATGACATCGCTcgatgagagaaaagatagGATAACGGATCAGCGGGCGAAAA-GAGACGAATTGAAGGCTGCGATGCAAGTAGGTGACAAC----TTAATTGACATCTTTCAATAAAT-----------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3594548 178 +  4147112 ---ATCATGATTTGAAGTCGGTGAATATATATTTACA---TTTAGGACATCAAATCGGATATGAAACAAATGATGACTACACTTGACGAGAGGAAAGATAGGATAACGGATCAGCGGGGGAGAA-GAgatgaattgaaattcatcatGCAAGTAGGTGACAAC----TTAATTGACA-CTTTTGATAGAT-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   447778 180 +   823664 atagttataaataaaaatta--------ttacgTTTA---TTCAGGATATCAAAATCGAAATGAAACAAATGATGTCAACATTGGATGAGAGAAAAGATAGGATAACGGATCAGCGGGCAAAGC-GGGATAAAATGAAGGCTGCGATGATGGT--------------ATAGTTGACA-CTTTTAACAGATCACTGACACTAAACGCT
i caeJap4.Scaffold18194 I 1075 I 5

a score=17646.000000
s ce10.chrX              5305368 102 + 17718866 CGAGAAATTCAGCAAAAAATGAGCCAGCTGGCTACAA-TCAAAATG-----G-AAGCAGACCAATTTATGGCTGAACTGGAGCGTGATAATAAGAGATTGGTTGAGGTA
s caeRem4.Crem_Contig0   2097039  98 -  4500979 ----catttcagcaaaaaatgga-----tGCAATTAA--TATAATGAAGAGGCAAAGAGAAGAGCAAGTGGcagaaatggaaagaaataaCAGATTGCTTGTTGAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     45523  97 -    90967 -----GTTTCAGCAAAAAGCCCATGAGCTGGAGTCGA--CAAGACA-----GCAGAATGAGCGACTGGTGGCTGAAATGGAACGGAATAACAAAATGGATGTAGAGGTA
i caeSp111.Scaffold527  C 0 I 181
s caePb3.Scfld02_0       3594726  98 +  4147112 ----AAGTTTAGCAAAAAATGGATCAGTTGGAATCAGTTCATGCCG-------AGCAAGAGAGACAAATGGCAGACATGGAACGGAATAACAAGATGGTTGTCGCGgta
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18194   447963 102 +   823664 cgaaaaatttagaaaaattcggaaaaactGGCAGAGA-TGAAAACT-----G-AGATGGAAGAGCGGATGAATGAAATGGAACAGATTAACAGAATAACAGTTGAAGTA
i caeJap4.Scaffold18194 I 5 I 29
e cb4.chrX              10655944 120 + 21540570 I

a score=0.000000
s ce10.chrX              5305470 55 + 17718866 CGGACTTGAATTTGGAGTATTGTCAGAGGGGATTCGATCTAAATTCACTTTTGAT
e caePb3.Scfld02_0       3594824 16 +  4147112 I
e caeJap4.Scaffold18194   448065 29 +   823664 I
e cb4.chrX              10655944 120 + 21540570 I
e caeSp111.Scaffold527     45620 181 -    90967 I
e caeRem4.Crem_Contig0   2097137  0 -  4500979 C

a score=-289.000000
s ce10.chrX              5305525 84 + 17718866 ACCGGATATGATACAACACTTTAAAATTTTTTTCGTTTTTTAAAACATTAAGACAAAGTTTAGAAAAATTTCGAGTGTTTCTGA
s caeRem4.Crem_Contig0   2097137 39 -  4500979 ACCTGATATCATAGAATATACTGATATAT---------------------------------------------GTATCTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3594824 16 +  4147112 I
e caeJap4.Scaffold18194   448065 29 +   823664 I
e cb4.chrX              10655944 120 + 21540570 I
e caeSp111.Scaffold527     45620 181 -    90967 I

a score=0.000000
s ce10.chrX              5305609 54 + 17718866 AGATGAAACCTTATAATTTTCAAAAACAAATAGTTAAAACATAATTAGAGTATA
e caePb3.Scfld02_0       3594824 16 +  4147112 I
e caeJap4.Scaffold18194   448065 29 +   823664 I
e cb4.chrX              10655944 120 + 21540570 I
e caeSp111.Scaffold527     45620 181 -    90967 I
e caeRem4.Crem_Contig0   2097176  0 -  4500979 C

a score=-886.000000
s ce10.chrX              5305663 48 + 17718866 CAATTGCAGAGACAAAAAGTTTTTACCATTTTTTGATTGCACATAAGT
s caePb3.Scfld02_0       3594840 15 +  4147112 caaCTG------------------------------TTACATGTA---
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18194   448065 29 +   823664 I
e cb4.chrX              10655944 120 + 21540570 I
e caeSp111.Scaffold527     45620 181 -    90967 I
e caeRem4.Crem_Contig0   2097176  0 -  4500979 C

a score=-3749.000000
s ce10.chrX              5305711 59 + 17718866 TCTACTACGATTTTTGGTCATTTTAAACAAATTGAGTTTTTTAAAAGATTTTCCCCACA
s caeRem4.Crem_Contig0   2097176  4 -  4500979 TCTA-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3594855  6 +  4147112 TCTTTT-----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448065 29 +   823664 I
e cb4.chrX              10655944 120 + 21540570 I
e caeSp111.Scaffold527     45620 181 -    90967 I

a score=684.000000
s ce10.chrX              5305770 10 + 17718866 GATGATAGCA
s cb4.chrX              10656064 10 + 21540570 GATGATAATA
i cb4.chrX              I 120 C 0
e caePb3.Scfld02_0       3594861  0 +  4147112 C
e caeJap4.Scaffold18194   448065 29 +   823664 I
e caeSp111.Scaffold527     45620 181 -    90967 I
e caeRem4.Crem_Contig0   2097180  0 -  4500979 C

a score=36779.000000
s ce10.chrX              5305780 148 + 17718866 TGCTCATTTTCAGAATGTAAAAGAACTTGAAACAACTGTAAGAGATTGTGATGACAGAATACCTGAGTTGAAAAATGAGCTGGCGATTTTGTTGGACGATAAAAACAAAATGGAAGGGGTTTCAGGAGAAAACTTGGAAGTGAGTTGA
s cb4.chrX              10656074 141 + 21540570 TTGTTGATTACAGAAAATCAAAGCTCTCGAAGATTCGATTGCAAATTGCAAGGAAGATATTCCAAGGCTGGCTAAGGAATTACAAGGGTTGCTGGAGGATAAGAACAGTTTAGATGGAGTCGCTGGATCTAATTTGGAGGT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2097180 138 -  4500979 -------TTGCAGAGTGTCAGAGATCTCGAGAATACAATTGAAGAATGCGGAGAAAAGATTcctgaattgaaaaatgaattagcAATATTACTGGATGATAAGAATAGTTTAGAAGGAGCCAGTGGAGACAATTTGGAGGTA---AAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3594861 143 +  4147112 -----ATCTTCAGAGAGTGAAAGATCTAGAGTATACTATTCAAGAATGTAAGGAAAGAATTCCGGAGTTAAAGACTGAATTGGCACAACTATTGGAGGATAAGAACAGTATGGCCGGTGCAGCTGGGGCAGAATTAGAGGTAATTAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   448094 148 +   823664 TGCCTAGTTTCAGAGAGTCAAAGATCTTGAACTAACAATACAAGAATCCCGTGAAAAGATCCCAGAGCTAAAAGCAGAGTTGGCTGATTTGCTAGATGATAAAAACAGTCTTCAAGGCTCGGGTGGAAGTAACATTGAGGTAGGTTTA
i caeJap4.Scaffold18194 I 29 I 203
e caeSp111.Scaffold527     45620 181 -    90967 I

a score=-7526.000000
s ce10.chrX              5305928 98 + 17718866 CAATTTTCAGCACGTGAAAACAACTATGATAAGAGCGTAACAATGCAAACTTGAAAGCATGCGAAACTCGTGATTTTTGATTTTTTTTTCCTTATAAT
s cb4.chrX              10656215 53 + 21540570 ------TTGGC-ctt---------tactttgaa-----------------------------aaaagaaatagtttTTAACCTCATCTTCTTTCCCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2097318 63 -  4500979 CAGA-ATTGTCACAT---------TATGATGAATTCG-------------------------GAATACAATAATACGTGATTGCTGTTAGTTAACAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3595004 59 +  4147112 CAAACATTGAA-------------TGTGTTGAAAACA-------------------------TGATCCCACTatttgaaacttcattttctcagCGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448242 203 +   823664 I
e caeSp111.Scaffold527     45620 181 -    90967 I

a score=-16648.000000
s ce10.chrX              5306026 75 + 17718866 CGGTATGCAGACATTGAAAAAATTTGATGT------TTGCTGAGTGAACCAATTCTTTAAAAGAAAAACGTGATGC----------------------ATATG
s cb4.chrX              10656268 60 + 21540570 AAACATCCTCAC-------AAACACAATTTAGCACGTC--------------CGCATTATCCATCTAATCTAGTGC----------------------ACATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2097381 47 -  4500979 TACCAT--------------Gacattattt------tt--------------ctatttctgcaCACAATTttgtct----------------------ccatt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3595063 41 +  4147112 --------------------AGTTTCATAT------CT--------------TCATTTTAGCgtataattttttct----------------------acaaa
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   448445 79 +   823664 CGATACGCAGac--------aagaaaatataaaatgcC--------------TCGGTAGCGCGCGAAACCCATTGCTGCACCCTAGAAATACCTGAAAACA--
i caeJap4.Scaffold18194 I 203 C 0
e caeSp111.Scaffold527     45620 181 -    90967 I

a score=49681.000000
s ce10.chrX              5306101 172 + 17718866 AACTCTT------TTCAGTTTT-AATTCTTC-----CAGGAACTGCTATCTAAAGCTGCCGAAAAAGAGCAACGAATTGACACTGAAATCGAGGAAATGGGCGATTTCGATGAGAGCCGCATGCAAGCTGAACTTTGGAAGGGACTACTCACCATTTTCGAGACTAAAATTGAGATTTTCAAAG
s cb4.chrX              10656328 169 + 21540570 --TATTT------cttaactttcaatttttta----caggaTCTAGTTGCTGAAGCTACCgggaaagaaaatgaaatcgaTGCTGCTGTTGGAGAAATTGGAGATGTGGATGAGCAACGGTATCAAGCAGAAATGTGGAAAGATGTTCTGTCAATGTTCGAGCTCAAGATGGA---TTTCATAG
i cb4.chrX              C 0 I 423
s caeRem4.Crem_Contig0   2097428 177 -  4500979 --ttttcaccCTGCTTCCTTAttaatttttc-----caggaaaaagtCACATTAGCagctgaaaaagaacaagaactAGATGCACAAATTGAGGAAATGGGAGACATGGATGAGATGCGTTTGCAAGGAGAATTATGGAAAGACATACTCACTATCTTTGAAgtcaaaatggaaattttcaagg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     45801 178 -    90967 aacattt------ttgaactttataTTCTTTCCATTTAGCAAAGACTTGTGAAAGCAGAGGCAAGAGAACACCAAATTGACACAGAGCTCTCGGAATTGGGCGAAATGGAGGACCAACGTTTCCAGGCTGAGTATTGGAAAGATCTCTACGTTATTTTTGAGGCAAAACAtgagattttcaaag
i caeSp111.Scaffold527  I 181 C 0
s caePb3.Scfld02_0       3595114 157 +  4147112 actaGTT------TTCAGGCTCAAATCT---------------------CAGAAGCGGAGAAAACAGAACAAGGGATAGACGCTGAGCTAGACGAGTTGGGAGATATGGATGACCAACGTCTGCAAGCCGAAATTTGGAAAGACCTCTACGCAATTTTCGAGACCAAAATGGAGATTtttaaag
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194   448524 173 +   823664 -ACATTT------CACTAATAGTAACGTTTTT----CAGCAACAACTAAAAGAAGcggaagaaagagaaaaacatATTGATGAGCAAATTAACGAATTGGGCGACGTAgaagagaaaataaaacagGCCGGATATTGGAAAGACCTTCAAATCCTTTTCTCTGCAAAACTTGACATTTTCAAAG
i caeJap4.Scaffold18194 C 0 C 0

a score=4569.000000
s ce10.chrX              5306273 14 + 17718866 AGAGAGCAAACTCT
s caeRem4.Crem_Contig0   2097605 14 -  4500979 AGAGATCGATGTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     45979 14 -    90967 aaaaactgaacacT
i caeSp111.Scaffold527  C 0 I 239
s caePb3.Scfld02_0       3595271 14 +  4147112 agaaaatgaactcT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   448697 14 +   823664 AGAAAGAGAACTCA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10656497 423 + 21540570 I

a score=1987.000000
s ce10.chrX              5306287 9 + 17718866 AGAAACTAA
s caeRem4.Crem_Contig0   2097619 9 -  4500979 CGTCATtaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3595285 9 +  4147112 CGCCACTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   448711 9 +   823664 CGTAACTGA
i caeJap4.Scaffold18194 C 0 I 803
e cb4.chrX              10656497 423 + 21540570 I
e caeSp111.Scaffold527     45993 239 -    90967 I

a score=273.000000
s ce10.chrX              5306296 1 + 17718866 T
s caeRem4.Crem_Contig0   2097628 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 I 109
s caePb3.Scfld02_0       3595294 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448720 803 +   823664 I
e cb4.chrX              10656497 423 + 21540570 I
e caeSp111.Scaffold527     45993 239 -    90967 I

a score=900.000000
s ce10.chrX              5306297 17 + 17718866 CCACTTTGCAAAATTGA
s caePb3.Scfld02_0       3595295 17 +  4147112 TCAGTTtgttaaattga
i caePb3.Scfld02_0      C 0 I 212
e caeJap4.Scaffold18194   448720 803 +   823664 I
e cb4.chrX              10656497 423 + 21540570 I
e caeSp111.Scaffold527     45993 239 -    90967 I
e caeRem4.Crem_Contig0   2097629 109 -  4500979 I

a score=0.000000
s ce10.chrX              5306314 1180 + 17718866  
e caePb3.Scfld02_0       3595312  212 +  4147112 I
e caeJap4.Scaffold18194   448720  803 +   823664 I
e cb4.chrX              10656497  423 + 21540570 I
e caeSp111.Scaffold527     45993  239 -    90967 I
e caeRem4.Crem_Contig0   2097629  109 -  4500979 I

a score=1136.000000
s ce10.chrX              5307494 69 + 17718866 TTTAATTTGACTGATAGAATGAATGTGGCAAATGAAAGAAAAAT----TGATTGGGAATGGTAGGTAAAGTTC
s caeRem4.Crem_Contig0   2097738 69 -  4500979 tttattttgaaaaagaaaataaa----atatttgaaagaaaagtatgatggttagaaaacataagaaaaataa
i caeRem4.Crem_Contig0  I 109 C 0
e caePb3.Scfld02_0       3595312 212 +  4147112 I
e caeJap4.Scaffold18194   448720 803 +   823664 I
e cb4.chrX              10656497 423 + 21540570 I
e caeSp111.Scaffold527     45993 239 -    90967 I

a score=333.000000
s ce10.chrX              5307563 8 + 17718866 AATGTACG
s caeRem4.Crem_Contig0   2097807 8 -  4500979 gaagaata
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3595524 8 +  4147112 aaagaagg
i caePb3.Scfld02_0      I 212 C 0
e caeJap4.Scaffold18194   448720 803 +   823664 I
e cb4.chrX              10656497 423 + 21540570 I
e caeSp111.Scaffold527     45993 239 -    90967 I

a score=7716.000000
s ce10.chrX              5307571 65 + 17718866 ------AAATAATTGTGATATTCACG------TATTC-AAATTGTTGTTTAATTAGTAGTTATATGATTTTTTAGATC
s caeRem4.Crem_Contig0   2097815 68 -  4500979 aaaaaataagcattttgatatttatgcaaagtcattc-aaaatttcagtcttcTGGGAATTGGATGAAG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46232 58 -    90967 ------aaagcaTTGTGATATTCATGCAATGTCATTC-AAATTAgtagttttctt----ttaattgAAC---------
i caeSp111.Scaffold527  I 239 C 0
s caePb3.Scfld02_0       3595532 63 +  4147112 ------aaagCATTGTGATATTCATGCAATgtcattcaaaacttgaagTATTTTGGGAATCATTTGAAC---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448720 803 +   823664 I
e cb4.chrX              10656497 423 + 21540570 I

a score=684.000000
s ce10.chrX              5307636  88 + 17718866 GAAAATGACTAGAAGTTGATTAT------CGATTTC----AAT-ATTA----GATTTTAAAAATTAGTATGTC--------------AGTGA----ATCA-AAATGAGAATGTAATGGACAA
s cb4.chrX              10656920  84 + 21540570 GACGGTAACTGAAAATTAAGTA-------------TTGA-------AATTCTAATATGAAATAT-----TGTCACAATAGAATC---AGTGAATCGATGAGAGACGAAATTG----------
i cb4.chrX              I 423 C 0
s caeRem4.Crem_Contig0   2097883  99 -  4500979 GACAATAACTAAAATTTGATTAT------CA--TTTTGATAAC-ATTATTCTAATTGCAAAAAT-ATTATGTCACAATGAAGTC---AGtga----atgagaaaagagattgt------aga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46290  90 -    90967 GACTTTaactaaaaattgattatcaTAAACAGTATCTGCTAACTGTTG----AATAGTCACA---ATTATGTC--------------agtga----atgagaaaagagatga-------ggg
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3595595 103 +  4147112 AACAATaactaaaaattgattat------CAGTCTTCGATAAC-ATTGTACTAACAGTCAAAAC-ATTATGTCACAAGGGAGAAATTAGTGA----ATCATGTGTGAGATAa-------gaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   448720 803 +   823664 I

a score=112870.000000
s ce10.chrX              5307724 150 + 17718866 AAAAAAAGAAAGA-----AAGATGGGGT-----------------------G---AAACT---AAAAAA--ATCATTATGCACTCGTAATTTCTCGCATCATCGATACATT-TCAGTTGATTAGATGCCTAACTAATTCCATCGGAAGTGGGAAGATGATCGTCGAATTTTTCTCTGCTCTGAAAAA
s cb4.chrX              10657004 180 + 21540570 -GAAGTAGAAAGA-----AATTTTGGGGCGAAAACATAGGAAATTAAAAACGGGCAAGCTTTGAAGAGATTATCATACTGCACTCGT-ATTTTTAGCATCGCTGATAGGTCGTCAGTTGATCAGATGCCTAACCAATTCCATCGGAAGTGGGAAGAtgattgttgaatttttctccGCACTGCAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2097982 155 -  4500979 aaaagtagaaaga-----aATTTGGGGA-----------------------GGGCAAGCT---AGAAGAATATCATTCTGCACTCGT-AATCATAGCATCATCGATATATAATCAGTTGAGTAGATGCCTAACTAATTCCATCGGAAGTGGAAAGATGATTGTCGAATTTTTCTccgcactgaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46380 158 -    90967 agaa--ggaaaaatagaaaattaagaaa-----------------------agacaagct---gggaaaatATCATTCTGCACTCGT-ATTTGTCGCATCATCATAACATTCTCAGTTGATCAGATGCCTGACTAATTCCATCGGAAGCGGGAAAATGATAGTCGAGTTCTTCTCGGCTCTGCAAGA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3595698 155 +  4147112 gaaagtggaaaaat----aattgagaga-----------------------aagaaagct---GGAAGAACATTATTCTGCACTCGT-ATTCATCGCATCATCGATACATT-TTAGTTGATTAGATGCCTAACTAATTCCATCGGAAGTGGGAAGATGATTGTTGAGTTTTTCTCAGcactgcaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   449523 144 +   823664 --------AAAAc-----aagaaaggaa-----------------------aagaaa------ataatatcaTTATTATGCACTCGT-ATTTGCAGCATCAGTGATACATTTTTAGTTGATTAAATGCCTAACTAATTCCATCGGAAGTGGGAAGATGATTGTCGAGTTTTTCTCCGCTCTGAAATA
i caeJap4.Scaffold18194 I 803 I 75

a score=-21375.000000
s ce10.chrX              5307874 17 + 17718866 AAACCAGGGTTATGTTT-------------------------------------------------------
s cb4.chrX              10657184 47 + 21540570 CGAG------AATATGTCATCAATCTTAGAGTAAGT-------TGTTTCAGTT---AAATAC---------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098137 65 -  4500979 aaagc----aaatataCGAATAATCAT---GTAAGTATATATCTGTTCACGTTGACAAACACGTGATAGATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46538 13 -    90967 AAACG----TGATATCA-------------------------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3595853 17 +  4147112 ataaa-----aacattaaGATG--------------------------------------------------
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold18194   449667 75 +   823664 I

a score=-1919.000000
s ce10.chrX              5307891 29 + 17718866 TCTTATTTTTTATTGAA-----------AGATTGTGAAAA
s cb4.chrX              10657231 25 + 21540570 CATCATTTCCTCTCTGA-----------AGATGGTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098202 25 -  4500979 CATCATATCCGAATTGG-----------AAATGTTG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46551 34 -    90967 ------GTTTGTTATGAAGAAACGTGACAGATGTTAAAAA
i caeSp111.Scaffold527  C 0 I 8
e caePb3.Scfld02_0       3595870 37 +  4147112 I
e caeJap4.Scaffold18194   449667 75 +   823664 I

a score=-4914.000000
s ce10.chrX              5307920  8 + 17718866 CAAA------------------------AAAA
s cb4.chrX              10657256  6 + 21540570 --------------------------TCATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098227  6 -  4500979 --------------------------TCATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46593 32 -    90967 CCGAATCACGTTCTTCCTATTTGTTATCATGT
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3595907  8 +  4147112 CCGA------------------------ATGA
i caePb3.Scfld02_0      I 37 C 0
e caeJap4.Scaffold18194   449667 75 +   823664 I

a score=195327.000000
s ce10.chrX              5307928 258 + 17718866 ACTCACGCGACGCTATTCAGAGTTTGAAGATATCGGAGTTGAAGAGCAGCTGGAGACTGAGCAATGACTGATGCAGCATCACGCAATGCCCGAGAAGCTTTCTGCTCTCCTTCCGCAGCAATCACCTTGTATCAAAACAGTTT------TTTT-TTCAAAAGTTAAATATTATTTC----AA------ACCTTAGCTCTAGCTTCTCGAGTGGCCTCTGCTTCTGCCGCCATTGCTCGTTGAAGTTGAATTGGGAGACGAACATCTTTGCTAAAA
s cb4.chrX              10657262 262 + 21540570 ACTCACGCGACACTATTCAATGTTTGCAGATAACGCAGTTGAAGAGCTGCTGGGGACTGAGCAATGACAGATGCGGCTTCACGTAGAGAACGTGATGCCTTCTGTTCTCCTTCGGCAGCGATGACCTAGAAT------AGTTGAACtaacaat-ttgaaaag--aaaaaaaaataa----aaagaattaCCTTAGCACGAGCCTCACGAGTGGCTTCAGCTTCTGCTGCCATAGCACGTTGAAGTTGAATTGGCAGACGGACGtctttgctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098233 258 -  4500979 ACTTACGCGACACTATTCAATGTTTGCAGATAACGAAGTTGGAGAGCAGCCGGGGACTGAGCAATGACTGTAGCAGCTTCACGCAATGATCGTGatgctttttcttctccttcggCAGCAATAACCTAAA--------AATTA---TAACATTAGTGCAGAT--TGATTTAGCTTC----AAATTAATACCTTGGCTCTGGCTTCTCGGGTAGCCTCAGCTTCAGCTGCCATGGCTCGTTGTAGTTGAATTGGAAGTCGGACGTCCTTacttaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     46625 257 -    90967 ACTTACGCGACGCTATTCAATGTTTGCAGATAACGGAGTTGAAGAGCAGCTGGGGATTGAGCAATGACTGACGCTGCTTCACGCAGTGAACGAGATGCTTTCTGTTCTCCTTCGGCAGCAATCACCTT----------AATTG------TTCT-ATTGAAAT-TAAATACAGTTTAGTTGAAACTCAAACCTTGGCTCGGGCTTCACGTGTAGCTTCAGCTTCAGCTGCCATAGCTCTCTGAAGTTGGATTGGTAAACGGACGTCCttactgaaa
i caeSp111.Scaffold527  C 0 I 33
s caePb3.Scfld02_0       3595915 258 +  4147112 ACTTACGCGACACTATTCAATGTTTGAAGATAACGAAGTTGAAGAGCAGCTGGGGATTGAGCAATGACTGATGCGGCTTCGCGAAGGGAACGAGACGCTTTCTGTTCTCCTTCGGCAGCAATCACCTA----------AATTGA--GGATTGT-GTGCAACT---AATATAAGTCAGGT-AAAGGAAAACCTTGGCTCTGGCTTCACGGGTTGCCTCAGCTTCAGCAGCCATTGCGCGTTGAAGTTGGATTGGTAGACGGACATCCTTGCtgtaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   449742 258 +   823664 ACTTACGCGACACTATTCAATGTTTGCAGATAACGGAGCTGGAGAGCTGCGGGAGACTGAGCAATGACAGTGGCAGCATCGCGCAGGGATCGAGAAGCTTTTTGCTCTCCTTCGGCAGCAATTAcctg----------aaaaaaacagtttta-gtTAAAAG--CAAGATTGTTTT----GTTCTCTTACCTTTGCTCTAGCTTCTCGTGCAGCTTCGGCTTCAGCAGCCATAGCGCGCTGAAGTTGAATAGGAAGACGGACATCTTTACTGAAA
i caeJap4.Scaffold18194 I 75 C 0

a score=-8633.000000
s ce10.chrX              5308186 42 + 17718866 TTTTTAATTCAATGAGAGACATTTTTTACTAATTTTAGTCAA
s cb4.chrX              10657524 32 + 21540570 -----a-tcagatttgcA----TTATGATAATTTTTAATGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098491 29 -  4500979 -----attcaaatgtgTG--------AATAAAGTTTTGTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3596173 15 +  4147112 -----------------------tttgaaaagttttga----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   450000 29 +   823664 ----------CATTTGAG---ATTTTCGTaaatttcaattaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     46882 33 -    90967 I

a score=-5260.000000
s ce10.chrX              5308228 25 + 17718866 ATTTTGT--------TCAATTTTCGTACAATTT
s cb4.chrX              10657556 31 + 21540570 TACAAATAACGCCACTCAGTGTACATATACT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098520 25 -  4500979 TCAAAGT--------TTGAAGTTCTTGAACGAT
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3596188 10 +  4147112 ---------------tagacgtttt--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450029  0 +   823664 C
e caeSp111.Scaffold527     46882 33 -    90967 I

a score=-17032.000000
s ce10.chrX              5308253 342 + 17718866 TCACATCAAAGTTGCCAAAAAA----AAGAACAATTCTAAAAACTA--GCAATTGCCAATATTGTTGAGAGACAAAGAAAAATTATTCCATCGAACATACAACATTTCAGAATTTTTAAAGATTTCAAATTGTACACTTCATTCATTATGTTGAAAGGGTCTTAAAGCTTGGAAGAATATGTATTCGTGAGAACATTAACAACGGTATACTAAAATAGCAAAA-----TATGCATTACACGTTAAAGTTTTTAAACTATAGTGAAGGTTGAATATTGCTGAAGTTTTCAGAAATCTACTATTT--TGGCAATATCAACAATAGCCGAATTTTGTTGATTGTTGTGTCTATATTTC
s cb4.chrX              10657587 221 + 21540570 -------------GGCACAAta------caaaagttatcaaaaatc---tatttgTTGAT-----------------AGAATGTGTTTCATGAtatctccaaaaattttgaatcttcaGATGTCta---------acttc----------------------taattttttcaaaaat---------tgagataatgaA---------GCTAAAAAAGCAAGTGTAAGTTGGCACATGATGT-----------------------ACTTGAAC--TGCTGTTGTTTTGCGAGAAACAATTTCTA-TGGAAAT-TCATAgatactaaaaatttg--gat-----------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3596198 183 +  4147112 -catttcaagaaaGCCAAAATAGAGcagcaaaaatagaaaaaaatagagtgaTTGTTTCT-----------------AAAATACGT-------------CGAAAGT----AGCATTCTGGCGTCTA--------------------------------------------------------------GAGACGA---------------TCAAATAGCAGAT-----TTTGAAtgcga------------------------------gaat-------tttttttctaatcaataGTTAATACTCGCAAG-TCCT-GTTAGGGGAAACATG--ACTTTT--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450029   0 +   823664 C
e caeSp111.Scaffold527     46882  33 -    90967 I
e caeRem4.Crem_Contig0   2098545   2 -  4500979 I

a score=-1590.000000
s ce10.chrX              5308595 8 + 17718866 AATTTTTC
s cb4.chrX              10657808 1 + 21540570 -------c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098547 7 -  4500979 -ATTTgtt
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3596381 4 +  4147112 ----AATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450029 0 +   823664 C
e caeSp111.Scaffold527     46882 33 -    90967 I

a score=-950.000000
s ce10.chrX              5308603 8 + 17718866 AAATATCA
s cb4.chrX              10657809 8 + 21540570 AAATATTC
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2098554 3 -  4500979 aaa-----
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3596385 3 +  4147112 AAA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   450029 8 +   823664 aattgtCA
i caeJap4.Scaffold18194 C 0 I 2
e caeSp111.Scaffold527     46882 33 -    90967 I

a score=306505.000000
s ce10.chrX              5308611 442 + 17718866 CTCACATTTCTACTCTTTCCACTTTGATTCCCCAGCTTTCAGTTGCTTCATCAAGAATTGTCTATAAAAAATAACTAATTGCTTAATTAGTACAAAATTTCCCTAC------CTGCATGGATGCTGCAAGTGTTTCACGATCCGAGAGAATTTCTGACAGGCTTCTCGTACCTAACATATTACGAAGCGTTGTTTGCGCAAGCAATCT-TTAATTAATAGCTAAACAATAGTCTGT-------------AAAATGAAATTATACCTTGTAGAATGGTGTGCATTTTCAACATTTGCCACGCTAACTGTTGCATTGCTGATCCTATAGTAAATAACAGCGTCGACAGACGTTGTCACTGAATCTTTTGTTAAAATTTCCTGC-GGCGGCACACTAAACGATACTGTTCTCAGATCAACCTTGGTGTACGATTCTATGCACGGAAGTACAAAGAAAATTCCTAAA
s cb4.chrX              10657820 353 + 21540570 CTCACATCTCAACCCGCTCCACTTTGATTCCCCAGCTCTCAGTGGCTTCATCAAGAATCGT---------------------------------------------------TTGCATAGATGTGGCAAGAGTTTCACGATCggacaaaatttcagaaagactTCTGGTACCAAGCATGTTTCGAAGAGTGGTTTGAGCTAGCAATCT----------------------------------------------------------AGTCGAGTGATGAGCATTCTCGACATTAGCAACACTGACTGTTGCATTACAAATCCTATAATAAATGACAGCGTCTACAGAAGTGGTCACCGAGTCCTTTGTCAGAATTTCTTGT-GGTGGCACACTGAATGATACGGTTCTCAGGTCCACCTTGGTGTATGATTCTATGCATGGCAGCACGAAgaaaattcctgga
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2098559 402 -  4500979 cttacatttcaacTCGTTCTACTTTGATTCCCCAGCTTTCAGTAGCTTCGTCGAGAATagtctgaaattagaaaaaaacatgtttcacattttatcaaaataataCAAAC--CTGCATAGAAGTGGCAAGTGTTTCACGATCggaaagaatttcagaaagactTCTGGTACCCAACATATTACGAAGAGTGGTTTGAGCTAACAATCT----------------------------------------------------------TGTGGAATGATGTGCGTTTTCGACATTGGCAACACTGACGGTTGCATTACAAATTCTATAATAAATAACGGCGTCTACTGAAGTTGTCACTGAATCTTTCGTAAGAATTTCTTGC-GGTGGCACACTGAATGACACAGTTCTTAAATCCACTTTTGTATAAGATTCTATGCAGGGTAGCACAAAGAATATTCCTGAA
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold527     46915 396 -    90967 CCTACATTTCAACTCGTTCTACTTTAATTCCCCAGCTTTCTGTGGCTTCATCAAGAATTGT---------------------------------------------------CTGCATGGCGGAGGCAAGAGTTTCACGATCAgagagaatttcagaaagactTCTGGTACCCAGCATGTTACGGAGAGTTGTTTGAGCAAGCAATCT-GAATTTAGGAATTGA-----------TCA---CTGTTA-ACTGATAACACTCAACCTAGTTGAGTGGTGAGCGTTTTCGACATTTGCCACGCTGACAGTAGCATTACAAATCCTGTAGTAAATAACCGCATCGACGGATGTAGTCACTGAATCTTTTGTGAGAATTTCTTGTGGGGGGCACACTGAATGACACTGTTCTGAGATCTACTTTCGTGTATGATTCTATGCATGGGAGCACGAAAAAGATACCTGAA
i caeSp111.Scaffold527  I 33 C 0
s caePb3.Scfld02_0       3596388 443 +  4147112 CTCACATCTCAACTCGCTCCACTTTGATTCCCCAACTTTCTGTAGCTTCATCAAGAATTGTCTGAAAt-----gataatcttttttgtttttcttcagttttccacTCTCACCTGCATAGCGGATGCAAGAGTTTCACGATCtgaaagaatttcagaaagactTCTGGTACCCAACATGTTACGAAGGGTGGTTTGAGCAAGCAACCTGGAACATAAAATCTCAACTTcatacttttt---ctgtt---ttgat--------acCTAGTTGAGTGATGAGCGTTTTCAACGTTCGCTACACTGACGGTAGCATTACAAATCCTATAATAAATGACTGCGTCGACCGAGGTGGTTACGGAATCTTTTGTAAGAATTTCCTGT-GGTGGTACACTGAACGACACGGTTCTGAGATCCACTTTAGTATATGACTCTATGCATGGTAATACAAAGAAGATTCCTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   450039 402 +   823664 CTTACATCTCTACTCTTTCAACTTTAATCCCCCAGCTCTCGGTGGCCTCGTCAAGAATTGT---------------------------------------------------CTGCATAGAAGTGGCAAGAGTTTCACGGTCGGAAAGAATTTCAGAAAGACTTCTGGTACCCAGCATGTTTCGAAGAGTTGTTTGAGCAAGCAATCT-GTACATTTGAtattatttgtattttatttcaccAATTATTGTGAT--------ACCTGGTAGAGTGATGAGCATTTTCTACATTTGCAACGCTTACAGTTGCATTGCAGACTCGATAATAAATGACAGCGTCTACGGAAGTTGTCACTGAATCCCTTGTAAGAATTTCTTGT-GGTGGAACACTAAATGATACGGTTCTCAGATCCACTTTGGTGTATGACTCAATACAAGGCAGAACAAAAAAGATTCCTAAA
i caeJap4.Scaffold18194 I 2 I 36

a score=-13480.000000
s ce10.chrX              5309053 33 + 17718866 ATGTTT---------------TAAATAGTTTTCCTATATCAACAAAAA
s cb4.chrX              10658173 34 + 21540570 aaatatATTCCTAAAGTCTGCTCAATGAAC--------------ATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098961 34 -  4500979 ACACAT-------AAGTcggttttatcgattttttt-------agtGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     47311 37 -    90967 ACACAA---GAGAAATATAGGGAAAGacagtttctg-------aaaa-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3596831 33 +  4147112 ATAT--------AAAGTTAAGTGATTATAGTTTCTG-------TAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   450441 36 +   823664 I

a score=253763.000000
s ce10.chrX              5309086 410 + 17718866 TAGGCACCTGGTCCTTTGGCTCCACCACCAATCAGTCGACCAAGTCGGAAAATGACGGCTCTCTCGTATTCTTGCACCACTTTCATACAAAAGTAAATTGAAACTGGGAATGTAGAAATAACCATTATCCATGACAGTCCCATAAGAAACCACCCACAAAACCCAAGACCAGTGTCATAATGTTCAGCTG-----GAAAATA----------------------------ATTTTTTTAAACT---TTAAAATGGTTTTCTTCTGAAG--------CTTTCAAA-----------------------GGGGCTGATTAAA--------------TTTAAAATTCACCGAAC------AACAATTACCATGCAGGAAAAG---GCAACACTTACGATTCATGTGTTTTGGATAATAGCTGAGCTTAAGTTGAGCTAACGATTGCCGTCGTGCTTCTCGTTCTTCTTTTGCAAAAATGAGTGGGTTGAGAGTGAACCTGAAA
s cb4.chrX              10658207 466 + 21540570 GTCTTACCTGGTCCCTTTGCACCACCTCCAATAAGTCTACCAAGTCGGAAGATCACAGCACGCTCATATTCCTGTACTACTTTCATACAAAAATAGATTGATACTGGGAATGTTGAAATCACAATAATCCACGATAAGCCCATTAAGAACCAACCGCAAAATCCAAGACCGGTGTCATAGTGTTcagctgaaacaaaaaattagaactgATTGAACGGAATaatcaaatgatttttttaaaaaaggaaaaattccgTTTATCatgaattctgtttttttttcaaatcctaa----------------agtgttttcaaaa-aacaa-----------------tgtgGAGCAGAATAAACAAGCATCAATTAGCTCAGAGATGCAACACTCACGATTCATGTGTTTTGGATAATAGCTGAGCTTGAGTTGTGCTAAGGACTGTCGTCTTGCCTCTCGTTCTTCCTTTGCAAAAATCAACGGGTTGAGTGTGAACctgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2098995 468 -  4500979 TATTTACCTGGCCCTTTTGCTCCACCACCAATGAGTCTACCGAGTCTGAAGATAACAGCTCTCTCGTATTCTTGAACCACTTTCATACAGAAATATATTGATACAGGAAACGTTGAAATGACTATAATCCATGATAAGCCCATCAAAAACCATCCACAAAACCCCAAGCCAGTGTCATAAtgttcagctg-----aaaaatttaaatt--ttgatc--------cCTTTAAGTATTTTAAAGTAAATCAAACTGCTCTTTAAACGG----------CTGTCCAAAACCCGATAGGAAGTTGGACAGCCGTATTTACAAAA-GTTAGCTGCTAGAATTAATGATTGCTGAGC------AACAATTAACGAATGGATAGAGGATGTAACACTCACGATTCATGTGTTTTGGATAATAGCTGAGCTTGAGCTGTGCTAAAGACTGTCGACGTGCCTCACGTTCCTCTTTGGCAAAGATTAGCGGATTGAGAGTGAATCTGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     47348 414 -    90967 ---gtaCCTGGGCCCTTTGCCCCACCACCAATAAGTCTACCAAGTCGGAAAATAACTGCTCTTTCGTATTCTTGAACCACTTTCATACAGAAATATATGGATATTGGGAATGTTGAGATCACCATCAGCCAAGAGAGTCCCATGAGAAGCCATCCACAGAATCCAAGTCCCGTATCGTAATGCTCAGCTG-----AAAATGTCAAAG-----------------------ATCATCTAAACC----TTAGG---------TGCCGG----------TCTTCAAA---------GGAAGTCAAATCGCCGTTTGGACAGAA---------------TAAATGATTGTCGAGC------ATCAATTAAT--TCAGAGACGGACTGCAAAACTCACGATTCATGTGTTTTGGATAATAGCTGAGCTTGAGTTGTGCTAAGGACTGTCGTCTggcttctctctcttcttttgcaAAGATGAGCGGATTGAGGGTGAAcctagaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3596864 442 +  4147112 GTTATACCTGGGCCTTTGGCGCCACCACCAATGAGTCTTCCAAGTCGGAAAATGACTGCTCGTTCATATTCTTGAACGACTTTCATACAGAAATAAATGGATATCGGGAATGTCGAAATCACCATCAACCAAGATAACCCCATCAGTAACCATCCACAGAATCCGAGGCCTGTGTCATAATGCTCcgctg-----aaaaatacaaaaa--gt------------------agCATCAGAAACAAAGTTAGGATCCCCTTTTGCCAA----------TCTTTCAA----------GAAGTTGAAAAGTATCTTCTACAAAAGATTAGCAAGCGGATTGAATGTTTATTGAGC------AACAATTAA-------GAAGGGATTGCAACACTCACGATTCATGTGTTTTGGATAATAGCTGAGCTTGAGTTGTGCTAACGATTGTCGTCGTGCTTCTCGTTCCTCCTTTGCAAAAATGAGTGGGTTTAGGGTGAACCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   450477 356 +   823664 TAATTACCCGGTCCTTTGGCACCACCACCAATAAGTCTTCCGAGCCGGAAGATAACTGCTCTTTCGTATTCTTGCACTACTTTCATACAAAAGTAAATTGAGACTGGAAACGTAGATATGACAATTATCCAGGAGAGTCCCATCAGGAACCATCCACAAAATCCTAGTCCGGTGTCATAGTGTTCTGCTG-----AAAAAG-----------------------------AGCT--------------------------TACTGT----------TTTTATAAGCTCTAT----------------AGTGTTTataagc-------------------------------------agaaaa---------------------aaaacttacgaTTCATGTGTTTGGGGTAATAGCTGAGCTTGAGTTGCGCTAAAGATTGTCGCCGAGCCTCTCGTTCTTCTTTGGCGAAGATTAGCGGATTAAGAGTgaacctgaaa
i caeJap4.Scaffold18194 I 36 I 427

a score=-303.000000
s ce10.chrX              5309496 1 + 17718866 A
s cb4.chrX              10658673 1 + 21540570 a
i cb4.chrX              C 0 I 1676
s caeRem4.Crem_Contig0   2099463 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     47762 1 -    90967 t
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3597306 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 662
e caeJap4.Scaffold18194   450833 427 +   823664 I

a score=-1780.000000
s ce10.chrX              5309497 1 + 17718866 --G
s caeRem4.Crem_Contig0   2099464 1 -  4500979 -g-
i caeRem4.Crem_Contig0  C 0 I 302
s caeSp111.Scaffold527     47763 1 -    90967 t--
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3597307 662 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I
e cb4.chrX              10658674 1676 + 21540570 I

a score=461.000000
s ce10.chrX              5309498 10 + 17718866 CGTAATTATT
s caeSp111.Scaffold527     47764 10 -    90967 tttgattatt
i caeSp111.Scaffold527  C 0 I 274
e caePb3.Scfld02_0       3597307 662 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I
e cb4.chrX              10658674 1676 + 21540570 I
e caeRem4.Crem_Contig0   2099465 302 -  4500979 I

a score=0.000000
s ce10.chrX              5309508 1389 + 17718866  
e caePb3.Scfld02_0       3597307  662 +  4147112 I
e caeJap4.Scaffold18194   450833  427 +   823664 I
e cb4.chrX              10658674 1676 + 21540570 I
e caeSp111.Scaffold527     47774  274 -    90967 I
e caeRem4.Crem_Contig0   2099465  302 -  4500979 I

a score=91.000000
s ce10.chrX              5310897 1 + 17718866 T
s caeRem4.Crem_Contig0   2099767 1 -  4500979 T
i caeRem4.Crem_Contig0  I 302 C 0
e caePb3.Scfld02_0       3597307 662 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I
e cb4.chrX              10658674 1676 + 21540570 I
e caeSp111.Scaffold527     47774 274 -    90967 I

a score=969.000000
s ce10.chrX              5310898 16 + 17718866 AGTTTTGAACTTTAAT
s cb4.chrX              10660350 15 + 21540570 AATTCTGTAATCT-AC
i cb4.chrX              I 1676 C 0
s caeRem4.Crem_Contig0   2099768 15 -  4500979 AACTTTGTAATCT-GT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3597307 662 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I
e caeSp111.Scaffold527     47774 274 -    90967 I

a score=4912.000000
s ce10.chrX              5310914 26 + 17718866 ---GATGATCCCTATGGGACCTTCTCATA
s cb4.chrX              10660365 29 + 21540570 TGGGATGAATCCCTTGAGATTTTCCCATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2099783 26 -  4500979 GAGAAT---TCCCTTGAGACGTTCTCATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48048 26 -    90967 ---GATTATTCCCATGAGGCTTTCTTCTC
i caeSp111.Scaffold527  I 274 I 8
e caePb3.Scfld02_0       3597307 662 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I

a score=50385.000000
s ce10.chrX              5310940 283 + 17718866 -CAGATTAATAACTGAGTTGCTCGTTCTCAAGTTTCATAAATCACTT--A---TGCGATTTGATGAAACGGCTCTAATTGAAACGTGT---ATGATTATCCCCAAGACGGCAAATAGGATGACTTC-----TCTG-----AACGCTCCCCCACCCATATGTACGATTAGTACCAGTAGCCAGT----TGAG---CAAAAAAACCTAAC--GGAACCTG-CCAGCGCCGTCT-GTCAAATTCGA-CATTGGT--------------TACCCCATAATTATCTTAAGAAAACTCG------------------CAAAACTAAACCTTTTTGG-----TCCCATGTTTCTTTTT
s cb4.chrX              10660394 299 + 21540570 CACGATTAATAACTGAGTAACGCGTTCTCAAGTTTCATAAGTC------ATTTCTAACTCGTCTAAATCGCTAATAATTGAATAGTGCAAGATCA--TCCTCGAA--AATCTAATGTGTGCTTTTC----TTCTG-----AACCCCGTTTTGCT-------ATGCTTAGGACTGGTGTCCGTTAGA-AAGACTCAAAAATAACCTGAACGAGAACCTG--------CATCC-GTCGAAATCGTGTGTTGGTCAACAAGAGTCATCCACCCCCTAATTATCTTAAG-AAACTCTTGTGTCTTTTTGACTTCAC-GAACGAAACC-TTTTGG-----TTTCGTG---T-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2099809 277 -  4500979 CAAGATTAGTAACTGAGTAACGCTTTCTCAAGTTTCATAAGTC------A---CAATATCCCATGAAACAGATCTAATTGAAATGTGT---TTCA--ATCCCGCAGTAACCTAATATGCTTATTCC----TTCTGCAGCCAACCCAGTTCCGTT----------TTTAGTAATAGCACCCGTtgaacgaga---aaaaagaacctGGA--GGAACCTG-CCCGTGCCGTCC-GTCAAAATCGT-CATTGGT--------------CACCCTATAATTATCTTAAG-AAACTCT------------ATTTCCCAAAACAAGACA-TCTTGC-----TTTCACGTTTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48082 266 -    90967 -AAGATTAGCAACT----------TTCTCAAGTTTCATAAGTC------A---TAATATCTCATGAAACGACTCTAATTGGCGAGTAT---TTGG--ATTACCCAATAAGCAAATAGAGTTACTCTTGGATCTCT-----TACCCTAAGT-------------ATTTAGTACTGGTGACCCGt----tggtttgaaaaagaaccTATT--GGAACCTGGCCAGTGCCTTAC-GTCGAATTCGT-CACCGGT--------------CACCCCATAATTATCTCAAG-AAACTCA------------------CAAAACaaaacc-ttcttcttctttcccatGTTTCCTTTT
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3597969 275 +  4147112 -CAAATTAGTAATTGAGTGTTgtcttctcaaatttcataaGTTATTCCAA---TGATACCCTATGAAATGACTCTAATTG-------T---TCCG--TTCATCATATGAGCAAACAGGAttacttccaaattttg-----aaccCCACTC--AC-------AAATTTAGTACTAGTGCCCCCT----GCTGTTCAAAAATAACCTAAA--GGAACCTGGCCAGTGTCTTGCAGTCAAATTCGT-CATTGGT--------------CACCCCATAATTATCTTAAG-AAACTCG------------------GAAAACAAAACC-GCTTGC-----TCCCATGTTTCTTTTT
i caePb3.Scfld02_0      I 662 I 22
e caeJap4.Scaffold18194   450833 427 +   823664 I

a score=-488.000000
s ce10.chrX              5311223 30 + 17718866 TTAGTTTTTTTTTGTTGTGAGAAATTCAGC---
s cb4.chrX              10660693 26 + 21540570 TTAGTACTTTTT----GTGAAAGAATAGTC---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100086 29 -  4500979 TTAGTACTTTTCC-AAACGGACGAATAAGC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48348 30 -    90967 --AGTACTCTTTT-CACAAAAAGGAAAGTCTAA
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3598244 22 +  4147112 I
e caeJap4.Scaffold18194   450833 427 +   823664 I

a score=-6336.000000
s ce10.chrX              5311253 73 + 17718866 GGGGA------------GAAAGTGGGGTTTGACTTCTGTCTTCTCTTCAATGATCTTCC-------CGAAAAAG----T-CCCTAATTCTTGTT-GCA
s cb4.chrX              10660719 63 + 21540570 -----------------GAAAA-------Cgaa--agattcttttt----cggtTGGTGATCTCTTCAAAAATG----TACCCTATTTGTTGTA-GGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100115 38 -  4500979 -----------------ACAA-----------------------------CGGTTTATG--------GAAAATG----T-CCCTAATTCTTGTA-GCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48378 69 -    90967 ---------------GTAAAAT---AATTCGAA--ACATCTCTTTCTCCACTATTTTTG--------GGCAATGCGGCC-CCGCGATTcttgaaggaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598266 77 +  4147112 AGAGAGAAGGTATTTgtgaaaa---gattcaaa----atttcgttcacaacgatttttc--------aaaaatg----t-cccTAATTCTTGTA-GCA
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18194   450833 427 +   823664 I

a score=68647.000000
s ce10.chrX              5311326 65 + 17718866 AAGAAGCGCTTTGATGAATGAGTTCGGATTACTCAAAGTGTAATCTTCCGTGTACGCAT--------GTGCGT
s cb4.chrX              10660782 64 + 21540570 AAGAAGTGCTTTGATGAATGAGTTCGGATTACTCAAAGTGTAATCTTCCGTGTACGAGCAAG---------AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100153 71 -  4500979 AAGAAGTGCTTTGATGAATGAGTTCGGATTACTCAAAGTGTAATCTTCCGTGTACGCGTATGTAT--GTGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48447 65 -    90967 aagaagtgcTTTGATGAATGAGTTCGGATTACTCAAAGTGTAATCTTCCGTGTACGCGT--------ATGTTT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598343 73 +  4147112 AAGAAGTGCTTTGATGAATGAGTTCGGATTACTCAAAGTGTAATCTTCCGTGTACGCGTGTTTGGTGGTGTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   451260 65 +   823664 aaGAAGTGCTTTGATGAATGAGTTTGGATTACGGAAAGTGTAATCTTCCGTGTACACAC--------ATGCAT
i caeJap4.Scaffold18194 I 427 I 9

a score=2732.000000
s ce10.chrX              5311391 21 + 17718866 ATGTGGCTCAACTGCG------------GGGCC
s cb4.chrX              10660846 30 + 21540570 GTGTGGCTCAA---CGATTTGGGAAGAAGCGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100224 18 -  4500979 GTGTGGCTCAA---CG------------GCGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48512 18 -    90967 ATGTGGCTCAA---CT------------GAACC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598416 19 +  4147112 GAAGGGCTCAAC--CC------------TTACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   451325  9 +   823664 I

a score=42363.000000
s ce10.chrX              5311412 172 + 17718866 CATCCAATGTTTCTGTC-ACTATTTTCATTTGAGAA-AA---------------------------GAGTAAGAGTAATAGCGGAAGTCGGCCGGAGTTCAGT-----GCCCC------CTTTCAATGGTA-----GGTGTGAATGCTCAGAAATACATATATAAATGAGAGGAATAAAAAGAGGAATAAAGGGAAATAAGACCGGAATTTG---GAGAA
s cb4.chrX              10660876 158 + 21540570 CTCGGAATGTTTCTGTCAACTATTTTTGGTAAAaca--gaagacgaagaagaagaaaagaatgagTGAATGAAAGTAAT------AGTTGGTCAGAGTTCAATCAA-------------------ATGGTCTA---GGT--------------AAAGGTGT------------------AAGATAAATGGGTGGACGTGAGACCGGATTTCACACAAGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100242 166 -  4500979 CATTGCATGTTTCTGtc-actatttttatttgaaaa--g---------------------------gaGTGAAAGTAATAGCGGAAGTCGGTCAGAGTTCATTCGGGTCCCCC-----------CATGGCATA---GGTGTGAATA---AGAAGGAGATATA-Aattgaggaa---aagaaaatgaatagcGGGAAGTGAGACCGGATTTTG---GAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48530 173 -    90967 CGTCGCATGTTTCTGtc-actattttcatttgaaaa-ag---------------------------gagtGAGAGTAATAGCGGAAGTCGGTCAGAGTTCAATCAAGGACCCC------TTTACAATGGTAAAAAGGGTGTGAATG---TGAAAtagataga-aaatgaaaga---gaatg--gGAATAATGGGAAGTGAGACCGgattttg---gagag
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598435 179 +  4147112 CATCGCATGTTTCTGTC-actattttcatttgaaaatgg---------------------------gGGTGAGAGTAATAGCGGAAGTCGGTCAGAGTTCAATCGAGGGTCcccttttattttcaatggtATA---GGTGTGAATG---GAAGATAGatata-aaatggaaaa---agagggaGGAATGAGAGGAAGTGAGACCGGATTTTG---GAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   451334 110 +   823664 CACTCAATGTTTCTGTC-ACTGTTTTTG---gaaaa-ag-------------------------------------------------------------------------------------------aca---gacgaaaaaa---gaaagaagagtaa-aagtagtttg---aggaagagcaaaaaTCAGAA-TGAGTTCAGCGTCTG---GAGAA
i caeJap4.Scaffold18194 I 9 I 37

a score=-5776.000000
s ce10.chrX              5311584 16 + 17718866 GAAAGATTTG--------GGCTT------------------A
s cb4.chrX              10661034 28 + 21540570 GAAA--TGAAGGGGGAAGGAGTT----CGTTGA--------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100408 24 -  4500979 AGAA--TTAA--------GAGTTCCCACCCAAC--------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48703 21 -    90967 aaaat-tttg--------gagTT----CCTCTG--------T
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598614 28 +  4147112 AGAA--TTTG--------GAGTt----cctcaaaatgatcca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   451444 37 +   823664 I

a score=194582.000000
s ce10.chrX              5311600 251 + 17718866 AAGTGCTTACCTGCGACCCATGCGTCCACGAGGTTGTCCGGTGGGCACCGGAATCTGAATGTTCCCTTCATCGTCCGATTCCATTAGACGCTCGCTCTCGTTTGACGAAGAATCTCCGGAATCACCGCCGTCTGTAATAAAAAACGACGATTTTT---GTG--CAATATGAGAAACTCGGCTAATTGACACT----------GGCTAC---AAA---------GTCTA-TGTGTCCAGTCT-GGTAATTGAACTCC------GAGGCGCTCTAGAGGCGGGGCATT
s cb4.chrX              10661062 239 + 21540570 AAGTACTTACCTGCGTCCCATGCGTCCACGAGGTTGTCCGGTGGGTACCGGAATTTGAATGTTTCCTTCATCATCCGATTCCATTAGTCTCTCACTCTCGTTTGATGAAGAGTCACCCGAATCACCGCCGTCTgtaaaacaaagaaaa--atcggCTTGTG--CAATTTGAGAAACTTGGCTAA-------T----------GGTTAA---------------GTCCC-G----CCAGTCTAGGTAATTGAGCTTC------CCTCTCTTCTAGAGGCGGAGCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100432 258 -  4500979 AAGTACTTACCTGCGACCCATTCGTCCACGAGGTTGTCCGGTGGGCACCGGAATCTGAATGTTCCCTTCATCGTCCGATTCCATTAGTCTCTCACTCTCGTTTGATGAAGAATCACCCGAATCACCGCCGTCTGtaacaaaaaaagac--atttg---atG--CAATTGGAGAAACTTGACTAATTGACACT----------GGCTAG---AAAAGTCTATCTGTCCA-GCTATCCAGTCT-GGTAATTGAGCTCC------AAGACTCGCCAGAGGCGGAGCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     48724 271 -    90967 GAGTACTTACCTGCGTCCCATTCGTCCGCGAGGTTGTCCGGTGGGTACCGGAATTTGAATGTTCCCTTCGTCGTCCGATTCCATTAGTCTTTCACTTTCGTTTGATGAAGAGTCTCCCGAATCACCGCCGTCTGAAACTTAAGCAAA---ATTTG---ATG--CAATTCGAGAAACTCTGCTAATTGACACTTctggacagaaaaaaa---agagttttgtCTATCTA-GCTATCCAGTCT-GGTAATTGAGCTTCAACA--AGGCTTTCTCAGAGGCGGAGCATT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3598642 269 +  4147112 aagtACTTACCTGCGTCCCATTCGTCCGCGAGGTTGTCCGGTGGGCACCGGAATTTGAATGTTCCCTTCATCATCCGATTCCATTAGTCTCTCACTTTCGTTTGATGAAGAGTCTCCCGAATCACCGCCGTCtgtaacacaaaaaaa---gtttg---atg--caATTCGAGAAACTTGGCTAATTGACACT-----ACACTGCCTAA---AGAAGTTTGTCTATCTAGGCTTTCCAGTCT-GGTAATTGAGCTTGAGCACCAAGAAGCCTCAGAGGCGGAGCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   451481 257 +   823664 aattatTTACCTTCGTCCCATACGTCCACGGCTTTGACCGGTGGGCACCGGAATCTGAATGTTTCCTTCATCGTCCGTCTCCATTAATCGTTCGCTTTCGTTCGATGAGGAATCTCCCGAGTCTCCGCCGTCTGGAAACAACGCACAA--ATGAG---AAGATAAATATGAGAAAGCTGACTAATTGACAAT----------AATTCACTAGAAAACTCGTCACTCTA--CTATGTATTTT--GTAATTGAGCTCT----------GCCACTGAAGGCGGAGCTTT
i caeJap4.Scaffold18194 I 37 I 132

a score=26036.000000
s ce10.chrX              5311851 65 + 17718866 CGTTTTT----------AAG-GAAACTTGAGAACTTCCTAGACTAGAGCTTATTGTCCAATTA-GAGCAGCTGGCAA
s cb4.chrX              10661301 68 + 21540570 tacttttcagaagaaaagag-gaaacaT--GAACC-----GATGTGAGCGGATTATCCAATTACGGACGAATGCAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2100690 60 -  4500979 CATTTTT----------AGA-GAAACATGAGAAGT-----GACTAGAGCGGATTATCCAATTA-GGACGAATGCCAA
i caeRem4.Crem_Contig0  C 0 I 86
s caeSp111.Scaffold527     48995 61 -    90967 CCTTTTT----------AGGAGAAACATGAGAAGT-----GACTCGAGCGGATTATCCAATTA-GGGCGAATGCCAA
i caeSp111.Scaffold527  C 0 I 82
s caePb3.Scfld02_0       3598911 60 +  4147112 CCTTTTT----------AGG-GTAACATGAGAAGT-----GACTAGAGCGGATTATCCAATTA-GGGCGAATGCCAA
i caePb3.Scfld02_0      C 0 I 92
e caeJap4.Scaffold18194   451738 132 +   823664 I

a score=386.000000
s ce10.chrX              5311916 19 + 17718866 ACAGCGAATGGTGAACTGT
s cb4.chrX              10661369 17 + 21540570 AC--CAATTGGTTTACTGT
i cb4.chrX              C 0 I 91
e caePb3.Scfld02_0       3598971 92 +  4147112 I
e caeJap4.Scaffold18194   451738 132 +   823664 I
e caeSp111.Scaffold527     49056 82 -    90967 I
e caeRem4.Crem_Contig0   2100750 86 -  4500979 I

a score=0.000000
s ce10.chrX              5311935 617 + 17718866  
e caePb3.Scfld02_0       3598971  92 +  4147112 I
e caeJap4.Scaffold18194   451738 132 +   823664 I
e cb4.chrX              10661386  91 + 21540570 I
e caeSp111.Scaffold527     49056  82 -    90967 I
e caeRem4.Crem_Contig0   2100750  86 -  4500979 I

a score=426.000000
s ce10.chrX              5312552 17 + 17718866 AAGATAGAAAGTGTCTA
s caeJap4.Scaffold18194   451870 17 +   823664 aaaataaataaaatata
i caeJap4.Scaffold18194 I 132 C 0
e caePb3.Scfld02_0       3598971 92 +  4147112 I
e cb4.chrX              10661386 91 + 21540570 I
e caeSp111.Scaffold527     49056 82 -    90967 I
e caeRem4.Crem_Contig0   2100750 86 -  4500979 I

a score=696.000000
s ce10.chrX              5312569 26 + 17718866 ----AAATAAAAGAAAAAGTGCGGAGTTGT
s caeSp111.Scaffold527     49138 21 -    90967 ----agaaagaagaaagagtgTGGA-----
i caeSp111.Scaffold527  I 82 C 0
s caeJap4.Scaffold18194   451887 22 +   823664 aaacaataaaaataaaaagggt--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3598971 92 +  4147112 I
e cb4.chrX              10661386 91 + 21540570 I
e caeRem4.Crem_Contig0   2100750 86 -  4500979 I

a score=2250.000000
s ce10.chrX              5312595 5 + 17718866 GTGTG
s caeRem4.Crem_Contig0   2100836 5 -  4500979 gtgTG
i caeRem4.Crem_Contig0  I 86 C 0
s caePb3.Scfld02_0       3599063 5 +  4147112 GTGTG
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold18194   451909 5 +   823664 GAGTG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10661386 91 + 21540570 I
e caeSp111.Scaffold527     49159 0 -    90967 C

a score=175418.000000
s ce10.chrX              5312600 426 + 17718866  
s cb4.chrX              10661477 546 + 21540570  
i cb4.chrX              I 91 I 32
s caeRem4.Crem_Contig0   2100841 460 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 23
s caeSp111.Scaffold527     49159 503 -    90967  
i caeSp111.Scaffold527  C 0 I 314
s caePb3.Scfld02_0       3599068 487 +  4147112  
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18194   451914 460 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=4809.000000
s ce10.chrX              5313026 153 + 17718866 A---CGGATCAAAGGATTTTTGAGATTTTTAAAATTTTCAGAATTTAGAAATCTTCCCGTAAATGTGAGTATATAC----TTCATTTGATTTGCTAGCTCTTCTCACACGCA----TTTTCCATTTCAGAAATCAAAGGA-----------AGTTAGT-AGGAAATGATGTCTGGG
s cb4.chrX              10662055 138 + 21540570 AAGCCGGATCAGTGGAATTTGGCGAATt-----------------------tcttttctcgaattttacCTAAGAGAGTTTGTGTTTGA--TGCTAGTTCTTTG---ACATCTCtctttctaattttaaaaaagaaagcat----------CGTTAAACAGGAACTAATGTCTGGG
i cb4.chrX              I 32 I 224
s caeRem4.Crem_Contig0   2101324 128 -  4500979 A---CGGATCAGTGGAATTTGGgaa----------------------------ttttcgtgaattttaCTTAAGAG----TTTGTTTGATGTGTTAGTTCTCCG---tcgtct---ttttcaattttaggaaTAACAGCACA------GGAAGTTACA-AGGAAATGATGTTTGGG
i caeRem4.Crem_Contig0  I 23 I 1
s caePb3.Scfld02_0       3599572 124 +  4147112 A---CGGATCAGTGGAATTTGAGGAA---------------------------TTCTCGTGAATTTTACTAAGGAG----TTTGTTTGA--TGTTAGTTCTTCA---gtgtt----tttccaatttcggaAATAACAGCACG------GAAGTTCGCA-GAGAAATGATGTCTG--
i caePb3.Scfld02_0      I 17 I 1
s caeJap4.Scaffold18194   452374 102 +   823664 --------AAGAAGGAGTTT----------------------------------------------------ACAG----GGTGTATAAGCTGA-AATTCGTCG---TTGAT----TTTCTTTTCTCACGAAAACTGGGAAATAGAACGGAAGTTTGC-GGGAAATGATGTCTGC-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     49662 314 -    90967 I

a score=-3906.000000
s ce10.chrX              5313179 53 + 17718866 GTCTGTTTT--CGGGTTGAATGATGATGATGAAATT--TAAACGAACCACCCTCTTA
s caeRem4.Crem_Contig0   2101453 44 -  4500979 GTCTGTTTT-------------GGAATGATGAAATTTCTCTAGGAACCATGATCTTA
i caeRem4.Crem_Contig0  I 1 I 288
s caePb3.Scfld02_0       3599697 23 +  4147112 ACCT-------------------AGATGATGAAATT----CAGAAG-----------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   452476 39 +   823664 GTTTGTTTGAATTGAGTACAGTGTGAAGTTGAAATT----TAG--------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10662193 224 + 21540570 I
e caeSp111.Scaffold527     49662 314 -    90967 I

a score=-13145.000000
s ce10.chrX              5313232 280 + 17718866 AGAAACGCATCGTTTTTGAGTAAAACGTAAACGAGCACCTCGGAGAAAAATCTGATAAAAGACGAATTGCAGAGGGAA---TATGTTGACTGGATTTCCTATTTGCTATATTTTTAAACATTC-GAAATATGAAATAGGAGCATTTTAGAATTTTTTAGAATATTTGAACATTTGGT--------------------------TTTGAACACTTTTTTGCATTTCTAGGTG-------------TTGAA------ACAAAA--------TTTTTAATTTGACAAA----------ACAGGTTTTCTG---TTGTTCATTTGTGATTCTT---AATTTAAAACTATTTTTAAAA
s caePb3.Scfld02_0       3599720 152 +  4147112 -------------TCTTGAAT-----------------CTAGGGGTGAGATCTAA---------------GGAGTGAG---TAG-----------TTACTATCAg-------------------------------------attttagagtttttggGAGCATCC---------------------------------------TATActcttttttggagtttgaaaag----------------aa------acaaa---------tccTTGAAGTGAGGAA----------ATAG--------------------TAAGATTCGG---AGTT--ACGGTAATTTTGAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   452515 330 +   823664 AGatcagcgtttttttttggtgtcagCTAAG-------CTATTAGGGAAAGCGAA---AAGTcgaattggaaaataaaatctaC-----------TTCCATTTCTTGCGAAGGTTACAAATAAGGAAACATGTATAAAGTGCAGTGGAAAATTTACTTGAGGTGTCATGTATTTGGTGGGCAGTTGGGTGTGAAAATGGGAACTTTGTgagtgtttttctttttcaaagcggctgtaaatttttgtgaactttctacaaagattgttttctttttcggtGACACATTGCTAAATCATGGGGGTTTCGCACTTTTTCCTTTGCCATcctttaaaatt--aatttttttttaaaa
i caeJap4.Scaffold18194 C 0 I 67
e cb4.chrX              10662193 224 + 21540570 I
e caeSp111.Scaffold527     49662 314 -    90967 I
e caeRem4.Crem_Contig0   2101497 288 -  4500979 I

a score=-684.000000
s ce10.chrX              5313512 40 + 17718866 AAAAGTCAAATCACTGAAGAAAAACTGAAAAAAACCCTAT
s caePb3.Scfld02_0       3599872 27 +  4147112 Tgcat-------------ggaaaattgaaactttcatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   452845 67 +   823664 I
e cb4.chrX              10662193 224 + 21540570 I
e caeSp111.Scaffold527     49662 314 -    90967 I
e caeRem4.Crem_Contig0   2101497 288 -  4500979 I

a score=-25297.000000
s ce10.chrX              5313552 502 + 17718866  
s caePb3.Scfld02_0       3599899 347 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   452912 565 +   823664  
i caeJap4.Scaffold18194 I 67 C 0
e cb4.chrX              10662193 224 + 21540570 I
e caeSp111.Scaffold527     49662 314 -    90967 I
e caeRem4.Crem_Contig0   2101497 288 -  4500979 I

a score=-3791.000000
s ce10.chrX              5314054  4 + 17718866 AT---------------AT
s caeSp111.Scaffold527     49976  2 -    90967 -----------------AT
i caeSp111.Scaffold527  I 314 C 0
s caePb3.Scfld02_0       3600246 19 +  4147112 GTATATTTGtatattgctt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   453477  3 +   823664 --------------TGC--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10662193 224 + 21540570 I
e caeRem4.Crem_Contig0   2101497 288 -  4500979 I

a score=66986.000000
s ce10.chrX              5314058 334 + 17718866 TCTATTTGTATATTGCTTCCTT-------------TGTGT--GC---------AAAAAAAGAAACA-ATTTAGGT----CAAACCGCTTGATGAGCCACCTAATTGCCCTTGTTT--TTGAAAACTGCA--TA--------CTACACGACGCC--ATCTAATTGTCTCGAGTG---------CGAAAAGACTAAA---AGAGAGAAAGGACCCCATG---------------AAGCTGTTTCACGGCT-CTTG--CCAATGAAAGTCAA-TTCGTG-AAGA-ATATTTTTTAGA------TGCGGTGTGCTGACT---TTTCTCACGATTTGC----------CGTTATCCTCGCCTTGTCTTACGACTTGTCATGGACAGCATTAACTTGTG---TGGCATGCA------GCCATCT--TACTTCAA--------------------AATTTTCAGAT------T
s cb4.chrX              10662417 324 + 21540570 TCTATTTGTATATTGCTTTTTTGCGTGGGCTCGCGTATACTCGCaactttgaagaaaaaagaaaca-ttttagtT------AGCTACTCGATGAGCTCTCTAATTGCCcttattt--tggaaaactttg------------ctACTCGACGCC--ATCTAATTGTTTCTAGTG---------CGaaaaagcgaaa---agaaaag---------------------------agggtttttcataaaa---------ataaaaagtcaAGTTTGTG-AATTCATTCTCT---------------GTGCGGCGACTATTTTTCTCAC----------GAGATGTCCATCTTATTATCC-CTCCCATCCCCTTTGTAGA--------GGTTTTAG---TATTTTGAAC----GACCAcgt--tgtttta---------------------aaatttcagat------t
i cb4.chrX              I 224 C 0
s caeRem4.Crem_Contig0   2101785 365 -  4500979 TCTATTTgtacatttcttttttgcgTGGGTC----TTTATTCGCGAgtt---ggaaaaaggaaaca-ttttAGGCAAGTCAAACCTCTTGATGAGCTTCCTAATTGCCcttgttt--ccaaaaactgcA--TACAACAACCCTACTCAACAACCGATCTAATTGTTTCGAGAG---------CGAAAAgactaaa---agaaaaaa-------cctG---------AGATGCAAGCTATTTCATGGCA-CTTG--CCATAAAAAGTCAA-TTTGTG-AAAT-ATTTTC----------------GAGCgttgactttttttctcacgaTTCGC-CGGAGATG-CCATTTTATTATCCGATCTTATTCCATGTTTTGG--------GACTTGTG---TGTGCAGAA-----GACCACGT--TGTTttacat-------------tttctcattttcagat------t
i caeRem4.Crem_Contig0  I 288 I 34
s caeSp111.Scaffold527     49978 355 -    90967 GTTTTTTGTggctctctctttc-------------ttcgt--GCATGTT----AGAAAAGGAAACA-TTTTAGGT----CAAACCACTTGATGAGCTCCCTAATTGCTcttgtttc-caaaaaactgcACTCA--------CTAGGCGAAACC--ATCTAATTGTCTTGAGTG---------AGAAAAGGCGAAGAATAGATCGAG-------TACGCG------GTCTTTTATGGCGTTTCACGGCT-TTTG--CCAT-AAAAGTCAA-Gttatg-aaaa-cttttc----------------gagaGCCGACT-TTTTTCTCACGATTTAC-TGGAGATG-CCATCTTATTATCCGACCTTATTCCATGTTTTGG--------GACTTACGATGGGTCGCGAG-----CAGCACGT--TGTTTTACAT-------------TTccctattttcagatgaattgt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3600265 325 +  4147112 tttttgtgtagcttccttcttt-------------tttctccgcgtgta----agaaaaagaaacatttttaggT----CAAACCACTTGATGAGCTCCCTAATTGCccttgtttctcaaaaaactgca--TA--------CTAGGCGACACC--ATCTAATTGTTTCGAGTG---------CGAAAAGACTAAA---AGAAAGAG-------GACA------------------------CACAGCT-TGTGCCCCAT-AAAAGTCAA-gttatgaaaaa-catttc----------------gagcgttgact-tttttctcacGATTCCCTTGGAGGTG-ACATCTTATTATCCGATCTTATTCCATGTTTTTG--------GACTTGTGCTCTGTTA----------GGCACGT--TGTTTTacgt-------------t----tattttcagat------t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   453480 384 +   823664 TCTTTCCTTTACTTTCTTCTTT-------------CAGCT-------TT----TGGAAAAGAAACA-TCTTGGGT----TAGACTACTTGATGACTATCGTAATTGCCGTCGTTTC-CAAAACAGAGTA-CTA--------CAACTCGTTGAC--ATCTAATTGTTTTGAGTGaagcaaagaaaaagaagtgaAA---AGGATGTG-------TATGTGTGGGAAGATAAACGTGACCTTATGCGGCATTTTG--TTttgacgagaaaa-aaaacg-aaaa-cttttttttatccaAACTTGAGCAGCGCTGATT--TTTTCTCACGATTCCA----AGATG-CCCACTCATTATCCATTCTTATGTGATGTTTTTG--------GGCAACGG---CATTATTTATCGGGGGCCAACTAGTGTTTTACATGCTCtttttttGGTTCACAATCTCCGGA--------
i caeJap4.Scaffold18194 C 0 C 0

a score=-3663.000000
s ce10.chrX              5314392 14 + 17718866 -TCAATGAGCGAGAC
s cb4.chrX              10662741  7 + 21540570 -tcattgC-------
i cb4.chrX              C 0 I 43
s caeSp111.Scaffold527     50333 14 -    90967 -ctattttcggaaag
i caeSp111.Scaffold527  C 0 I 8
s caePb3.Scfld02_0       3600590 14 +  4147112 -ccgttTCGGGAGGG
i caePb3.Scfld02_0      C 0 I 18
s caeJap4.Scaffold18194   453864  7 +   823664 Gcaatta--------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2102150 34 -  4500979 I

a score=103437.000000
s ce10.chrX              5314406 299 + 17718866 AAAACTAATTTTT----TTTCAAATTCAAAAGAATATCCCCCGCTTATTTTCAGATTGA-----TACGAT------TGAAGT--TCGAGCA--AAAGAA---------GCATGAGAT-------GCTTCGCCAGT-------------------TTTG---------ACCTATTCGTATTTCCGT------------CTGGTCAAATGTTTTTTCGCGCCTTTCTGCA--------GTGGC-A--------CT------GCACAACCGAACCGCCGAGCTAATTCCCAGAAGTACTTTCGGTTGATTTGTTG-TTCTCGCGG---------------AAAACAAACAACAATTTTTCAACGCCG-TTGAAGTAGATCATCCATCATCTAC-GGCGGGTGAGAAAAGCGTCTTCAA-
s cb4.chrX              10662791 303 + 21540570 ACAATTAAGCTTTCA--TCTCGTTTTCCA--------CCCTCTCCT-TTTCCAGATTGA-----TACGaa----------------aaaaaGCTGGGGAACGTCTTGAGCCTAGCCG-------TTTTTCTTTG------------------AGCATG---------ACCTATTCGTATTTCCTT------------TTGGTCAAATGTTTTTTCGCGCCTTTTCGCCTCT------CTACAACGT-----CTCGTCAAGCCGAACCGGACC-GAGAGCTAATTCCCAGAAGTACTTTGTGttgatttgttg-tttttcacg------------CTAATACAgaacaacaatttttcaacGCCACCAAGAGTAGATCATCCATCATCTAC-TGCGGGCTCCA--------TTGAA-
i cb4.chrX              I 43 C 0
s caeRem4.Crem_Contig0   2102184 287 -  4500979 acaattaaattttca--tcCC---------------------------CGCCAGACTGA-----TACGAA------TGAAGC--TCGAAAAGCAGAGCA--GACACGAGCTGAAGCG-------TTTCGGCTCGG----------------TGGCATG---------ACCTATTCGTATTTCCGT------------TTGGTCAAATGTTTTTTCGCGCCTTTTTGCCTCTT----ACTAC-ACGT-----CT------GTCTAACCGAACA-GAAAGCTAATTCCCAGAAGTACTTCGTGTTGATTTGTTG-TTTTCGACG-------------------AgaacaacaatttttcaacgCCA-CAAAAGTAGATCATCCATCATCCAC-GGCGGGTGGCAAACGGAT-TTGAA-
i caeRem4.Crem_Contig0  I 34 C 0
s caeSp111.Scaffold527     50355 307 -    90967 acaaataaaatttcattttct---------------------------cacaaGATTGA-----TACGATTCAATCTGAAGCTGTCGAGCCGCGCGAAA---------GCAGAAGCA-------TTTTGGCTCGT----------CCCCGTTGGCATG---------ACCTATTCGTATTTCCGG------------TTggtcaaatgttttttcgcGCCTTCTTGCCTCTC-ACTACTAC-AAGCAGGCGCC------GTCTAATCGAACC-GAAAGCTAATTCCCAGAAGTACTTTGTGTtgatttgttgtttttcacca---------------aaaacaaacaacaatttttcaacgCCA-CAAAAGTAGATCATCCATC--ATAC-AACGGGTGGGAAacgaat-tcaaa-
i caeSp111.Scaffold527  I 8 C 0
s caePb3.Scfld02_0       3600622 311 +  4147112 acaattaaattttca--ttct---------------------------cGCCAGATTGA-----TACGAT------TGAAGCT-TGGAGGAGCACAAAT---------GCAGGGGtgcggttttttttcgttcgctGCAATCTTGTCTCGTTGGCATG---------ACCTATTCGTATTTCCGG------------TTggtcaaatgttttttcgcgCCTTTTTAGCCATT--TTACTAC-ACGT-----CC------GCATAACCGAACCGGAGAGCTAATTCCCAGAAGTACTTTGTGTTGATTTGTTG-TTTTCggca---------------aaaacaaacaacaatttttcaacgcCA-CAAAAGTAGATCATCCATCATATAC-AGAGGGTGGCAAACGGAT-TTGAA-
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold18194   453871 304 +   823664 -------aaatttca--tttg-------------------------------AGATCGAACGTGTACGAT----TTTGGAGCC-CTGGCTAG----------------GGCTAGGCG-------TGTGAACTTGA-----------------AGCATGGAATTTGAAATACACCCATATTCACTTAATACTTGAGAACTggtcaaacgttttt-------ttttcacgcgtaCGGCCCTGC-CCG------CT------CTCCAGCGGAACT-CGAAGCTAATTCCCAGAAGTACTTTGAGTTGATTTGTTG-TTTTGGTAAGGCGAAGcacaaaagaaaacaaacaa-GACTTTTCAATGCCA-CAAAAGT--ATCATTCGTCATATACGGGTGGGTCTGAGAAGCAA-TTAAAA
i caeJap4.Scaffold18194 C 0 I 20

a score=-5654.000000
s ce10.chrX              5314705 23 + 17718866 TATAGCCCA-----------TGAG---TTTTA-TACTC
s cb4.chrX              10663094 35 + 21540570 TTTAGCGCCTTGCTGAAGTTAGAG---TAGTCGTAcga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2102471 27 -  4500979 TTTAGCGTC-----------AGAGGGTTAGTAGTACGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     50662 18 -    90967 ttcag-----------------ag---tactaaagaaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3600933 30 +  4147112 TCTAGCGCT-----GGCGCCTTAG---CAATACAACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   454175 20 +   823664 I

a score=95469.000000
s ce10.chrX              5314728 607 + 17718866  
s cb4.chrX              10663129 625 + 21540570  
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   2102498 653 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     50680 629 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3600963 644 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   454195 554 +   823664  
i caeJap4.Scaffold18194 I 20 C 0

a score=2478.000000
s ce10.chrX              5315335 22 + 17718866 AGTTTGTGGCCAGCAGGACTCT------
s caeRem4.Crem_Contig0   2103151 16 -  4500979 AATATGTG------AAAGGTCT------
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold527     51309 16 -    90967 AGTTTGTG------AAGAGTCC------
i caeSp111.Scaffold527  C 0 I 10
s caePb3.Scfld02_0       3601607 16 +  4147112 AGCTTGTG------AAGAACCC------
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18194   454749 22 +   823664 AGTTTGTA------AAAGGCATACTTCA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10663754 22 + 21540570 I

a score=80074.000000
s ce10.chrX              5315357 139 + 17718866 CGAACGCCTGGGTCTAAGTGTTA-AAAGGGCGGGGCCC--GTGGCTCCAGAG------------CATGTACAACTGCACTCG----AC-GACAAAATGAGCCCCGACCGCAGATGCCCTCT-------TCTTCGAAGAAATGAAAATATGAGAATCTAACTCTCGA
s cb4.chrX              10663776 143 + 21540570 CGAACGCCTCGAGCGAGGGA--GCAAGAGGCGGAGCCC--GGTGCGCCAGAG------CACAACCATGTACAACTATACTCA----AC------AACGAGCC---GGCGCAGATACCCTCCACTTTTGTTcctcagaaaatgaaattatgaaaatctaaCTCTCAA
i cb4.chrX              I 22 I 709
s caeRem4.Crem_Contig0   2103177 147 -  4500979 CGAACGCCTAGA-CGATGCGTTGAGAGAGGCGGAGTCC--GGTGCTCCGGAGCTCCGACACAACCATGTACAACTCCACTCG----AC-AACGAAACGAGCC---GACGCAGATGCCCTCC-------CTCctcag-aaatgaaaatatgaaaatctaACTCTCGA
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold527     51335 144 -    90967 CGAACGGCTAGA-CGATGCGTTG-GAGGGGCGGAGTCCGGTGTGCTCCGGAGCTCCGACACAACCATGTACAACTCCACTCG----AC-GAAGAAACGAGCC---GACGCAGATGCCCcac-------tc-----aaaaatgaaaatatgaaaatctAACTATCGG
i caeSp111.Scaffold527  I 10 C 0
s caePb3.Scfld02_0       3601627 138 +  4147112 CGAACGCCTAGA-CGATGCGTTA-GAGGGGCGGAGTCC--CGTGCTCCAGAGCT---------CCATGTACAACTCCACTCG----AC-GACGAAACGAGCC---GACGCAGATGCACCCT-------TCtctcaagaaatgaaaatatgaaaatctaACTCTCGA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   454771 133 +   823664 CGAACGCCTATA-CGATGCGTCG-AAGAGGCGGAGCTG--CGTGCTTT-GAGCT----CAGTGCCATGTACAACACCACTTGTGTTACGGAGAAAACGAGCC---GACGCAGATGCAccag------------caagaaaaataaat---------tcatttttgt
i caeJap4.Scaffold18194 C 0 C 0

a score=9851.000000
s ce10.chrX              5315496 238 + 17718866 TGTATTATAAATTGTTGGTTTACTAGATAC-CCTTTTGTCTT-------TTTAACCT--AGCCTTGGAATTTGACGTGTCTTGATTTATTTGTACAA----------------TTTAAAAGTATCAAACT-AGAAAACAA-CAAATATATTTAAA-------AAAAG----------------------------ACATTTGTCATTCTTCACC--AACTGGTTTTT---------------------CCTAATTAAGAA--GAA----------CAAGGATTGATAAATTGTGTCCGGCAGATGGGAGA-AGTATTAAAGAAAATTTGCATAAAAT
s caeRem4.Crem_Contig0   2103324 238 -  4500979 TGTTTTATAAATTGCTCGTTTACTTGA-AT-CCTTTTGTCTTGGTGACTTTTATGCT-----------ATTTGAT---------GCTTTGTGAACAAAGA------------CGTCAAAATTAGACTAGC-AAAGTATAATAAGATGGAACCGGAACAGACAAAAAG----------------------------TCATTCATCAATTTCCTCC--AACtggttttt----------------------ttaatttagga--TCT----------CGAAGATTGATGAATTATGTCCGGCAGATGGACAATGTGATACTACCCAATTTACATAAAGT
i caeRem4.Crem_Contig0  C 0 I 124
s caeSp111.Scaffold527     51479 213 -    90967 CATATTATGCCTTGCTGGTTTACCCGA-AC-CTTTTTGGTTCGT-----GTTATGTT-----------AATTTAC---------ATTTCGGGTA-------------------TCCAAA-------------AAACCCAC-GAGACTGATTGGAATAAACTGAGAAG----------------------------TCATCCATCAAATTCACACACAACTGGTTTTT---------------------CCTAATTTCGGT--TCC----------CGGAGATTGATGAATTATGTCCGGCAGATGGAGAA-ggga--tgaaaaaatttacatAAAGT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3601765 229 +  4147112 CGCATTATAAATTGCCGGTTTACTTGC-ACTCCTtttgtttcgg-----tttttcttttaGT----AAGGTTTAC------TGAATTATGAGAa-------------------gttaaaaatagaaaag---aagcagaa-aaaagttaagTGAGTGAAGTGAACAT----------------------------TCATCCATCAAATTCGCAC--------TTTTT---------------------CCCAATTCCGGGAACCG----------CGAAGATTGATGAATTATGTCCGGCAGATGGACTG-Gcgac-tcaaaaaattaacataaaAT
i caePb3.Scfld02_0      C 0 I 247
s caeJap4.Scaffold18194   454904 299 +   823664 gACTTTATAAAC--CTTTTTTACTTTC-AT-TATTTATATTTGA-----GTTA-GTC-----------AGTTAAT------T--CTCATTTGTATAGAAATTACTTTAATTTTCTTAAAGTCAACTTAACTTAAATTAAA-CTAGAGtatataaattaaattaaaagcCACGTTTACGCGTCAGATACGCTCATTTCATACGTCACTTTCTTTC--TACTGGTTTTTGCTTGCGCCCGCCCGCCGCTGCACATTTTAGAT--GCCACGTTCAAAACAATGATTGATGAATTATGTCCGGCGGATGAA----GACAAACTGCCAAATTTgcataaaat
i caeJap4.Scaffold18194 C 0 I 194
e cb4.chrX              10663919 709 + 21540570 I

a score=282.000000
s ce10.chrX              5315734 33 + 17718866 GA------CAGGATTAAAATTCATTTTCATATCAAAAAG
s caeSp111.Scaffold527     51692 39 -    90967 GAGTCTTCTAGAAGTGAAATGATGTTTGATATGTGAAAG
i caeSp111.Scaffold527  C 0 I 270
e caePb3.Scfld02_0       3601994 247 +  4147112 I
e caeJap4.Scaffold18194   455203 194 +   823664 I
e cb4.chrX              10663919 709 + 21540570 I
e caeRem4.Crem_Contig0   2103562 124 -  4500979 I

a score=0.000000
s ce10.chrX              5315767 980 + 17718866  
e caePb3.Scfld02_0       3601994 247 +  4147112 I
e caeJap4.Scaffold18194   455203 194 +   823664 I
e cb4.chrX              10663919 709 + 21540570 I
e caeSp111.Scaffold527     51731 270 -    90967 I
e caeRem4.Crem_Contig0   2103562 124 -  4500979 I

a score=527.000000
s ce10.chrX              5316747 45 + 17718866 GTAGACAAAAATAGTTGTAGAAATGTGA----------AATGGTTTTTTCCCGTT
s caeRem4.Crem_Contig0   2103686 55 -  4500979 GTATATAAAGGGAGGAGCAAACATGTTATTTTGCTAATAATGAtcatttcactat
i caeRem4.Crem_Contig0  I 124 C 0
e caePb3.Scfld02_0       3601994 247 +  4147112 I
e caeJap4.Scaffold18194   455203 194 +   823664 I
e cb4.chrX              10663919 709 + 21540570 I
e caeSp111.Scaffold527     51731 270 -    90967 I

a score=-1626.000000
s ce10.chrX              5316792 49 + 17718866 -------------TTTGTTCTTCTTTTCTACACCA-----CCACCGTTCTCT---------GATCCAGCAATTTCA
s cb4.chrX              10664628 63 + 21540570 -------------TCCGTTTTTCACTCTTAGACCACAATTGTTCCTTTCTCTGATTTatggaaaacaataaaattt
i cb4.chrX              I 709 C 0
s caeRem4.Crem_Contig0   2103741 69 -  4500979 tttcttcttgtgTTTCTTTTCCTATTCCAAGAACGGA---GCTTTCTTCTCC-ATCTA---GACTCAACATCATAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3601994 247 +  4147112 I
e caeJap4.Scaffold18194   455203 194 +   823664 I
e caeSp111.Scaffold527     51731 270 -    90967 I

a score=2471.000000
s ce10.chrX              5316841 6 + 17718866 CTTTTT
s cb4.chrX              10664691 6 + 21540570 cctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2103810 6 -  4500979 CATTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3602241 6 +  4147112 CCTTTT
i caePb3.Scfld02_0      I 247 C 0
e caeJap4.Scaffold18194   455203 194 +   823664 I
e caeSp111.Scaffold527     51731 270 -    90967 I

a score=48116.000000
s ce10.chrX              5316847 157 + 17718866 GACTTATGATAGAACATAAACCAAAAATCTTCTCTTCAATAT--------TCGAAAAAAAAACAAACAACAAAAATATAATCCCC--CACCTAAAAAA---AAAAGTTTCGCCTAC---GGAAAGA-AGACGACGA--CAAAAGTTGGGTGACT-----GAAGAGCGACGCTCAT-------CGGTTT
s cb4.chrX              10664697 158 + 21540570 cagctacatttttgtcCAG---ATAA------------------------CAGGAAGAGAAACAAACATCAACATTATAATCCTCTACACCTaaccaagaaaaaagtttaggcAACCAAAGAAGAC-AAAAGATGAGCCAAAAGTTGGGTGACTTTGAGGAGAAGT--CGCTCATAGTCGGCCGCTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2103816 143 -  4500979 GACTTATGATCACACATAA---AAAGCTTCTTC-----------------CAAAATGGGAAACAAACAAC-ACAATATGATCCC---CACCTAACCAAG--AAAAGTTTAGCCAaccaaagaaa---agaagacga--caAAAGTTGAGTGACT-----GAGGAGT--CGCTCat-------cggttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52001 164 -    90967 GATTTACAGAAACACAT-A---AAACCCCTTTTCttaaagatttttcaatgaaaaaggaaaacaaacaaC-ACAATATAATCCC---GACGTAAACGAG--AAAAGTTTGGCgaaccaaagaaaaa-agaagacga--caAAAGTTAAGTGACT--GAAGAAGAGT--CGCTCAT-------CGGTTT
i caeSp111.Scaffold527  I 270 C 0
s caePb3.Scfld02_0       3602247 145 +  4147112 GACTTATGATACCACATGA---AAATCTCTTTTAT---------------------GGAAAACAAACAAC-ACAATATAATCCCCTTCACCTAACCAAG--AAAAGTTTAGCCAACCAAAGAAAGACGGAAAACGA--CAAAAGTTGAGTGACT-----GAAGAGT--CGCTCAT-------CGGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   455203 194 +   823664 I

a score=66369.000000
s ce10.chrX              5317004 106 + 17718866 TCGTCT-TTGCAGGACT---------TTTCTTTATCTATGAATAATGTTTGTCTTG--TCCATAG---C----CTCCACG---TTTTTCATATAAATTTTGAATGTGTTCTGCTTTTTTTTGTAGTTA
s cb4.chrX              10664855  99 + 21540570 TTCTTCGTTGCAGGACT---------TTTCTTTATCTATGAATAATGTGTGTCTTC--TAGATGGGC-C----CACCACG---TTTttcatataaattttgaatgtgttcatcggc----------tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2103959  99 -  4500979 ttctgt-ttgCAGGACT---------TTTCTTCATCTATGAATAATGTTTGTCTTA--TAGATGGTCGC----CGCCAcg---tttttcatataaattttgaatgtgtTCTTTCGA----------TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52165 103 -    90967 TCGCCG-TTGCAGGACT---------TTTCTTTATCTATGAATAATGTTTGTCTTCGAGAGATGAGA-CCCGACGCCACG--tttttttatataaattttgaatgtgTTCTTCGAT------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3602392 101 +  4147112 TTGCCT-TTGCAGGACT---------TTTCTTTATCTATGAATAATGTTTGTCTTTGGGAGATGCGC-C----CaccacgtttttttttatataaattttgaatgtgtTCTAAGAT------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   455397 114 +   823664 TCCTTT-CTGcagcactttttttttctttctttagcTATGAATAATGTTTGTCTTG--TCGAAGA---T----CGCCACG---TTTTTCATATAAATTTTGAATGTGTTCACTCTT-CTCTACAAATA
i caeJap4.Scaffold18194 I 194 I 302

a score=-27069.000000
s ce10.chrX              5317110 106 + 17718866 TCTCACCACTTTATATtgtagatccgaaataaccccgaattt------tataatgaaacg--ttctgaaattaaaaaaataaaagttttaccggtaaaaaatttgtgaaagaaa---------
s cb4.chrX              10664954  48 + 21540570 ttttttttgtttttttgttt------------------gttt--------------------ctcaaaagctg---------------------------attgattacaaaa----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104058  85 -  4500979 TCTCACCAGTTTATAAGATGAA------------CCAAGTTTACAAGCAATGATAAACAA--ATCCAAGTTTGACACGGGGAAA--------------AAATTGAGCAGCAAA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52268  61 -    90967 -----CCAGT----------------------------GTTT---------AGTAAACCACGACACAATTGTGGTGttaatgaaat------------aaattgCTTACaagtac--------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3602493  56 +  4147112 -------------------------------------------------------AGCCACTTTATGAAAATGGTTTGGAAAATGT------------GAAgccattttgaaaacgaagttag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   455511 302 +   823664 I

a score=-13533.000000
s ce10.chrX              5317216 126 + 17718866 gcttattttcagctaaaatctcaaattttgccgacctctcaaaattagaattaacggaagtaagctttgatttaactatcacctgtcaatgaatattttggtaatttattgcatgttgtttcg--tcg
s cb4.chrX              10665002  67 + 21540570 --ctgtttttattaaaaacttctagtt-----------taaaaaattagaaaaaaccaCGTCAGTCAT---------------------------------------------TTTTGTTTCCGG---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     52329  32 -    90967 ----------------------------------------------agaaaaaaacaaggttGACCTT---------------------------------------------TTTTGTTCCG-----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3602549  25 +  4147112 ----gcttttg-----------------------------------aaaaaaaaaacacgtggA----------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   455511 302 +   823664 I
e caeRem4.Crem_Contig0   2104143   0 -  4500979 C

a score=20571.000000
s ce10.chrX              5317342 382 + 17718866 attgagatgcttttTCAAACAATTTTGCTATATTAGGTCTAAGTCTCAAATTCTCAGATTTTGGTACCTTTAATAGGGTGTTGATGAAGCAAAGAGCATAGGTAGTTGGAAATATTTGTTTTACTAGGAATTTCCGGGTAGACTTTTGTCTAAAATTTTGAAATTGTTTCTCGG-------------AGTCTTATTGAGACTGTGCACTGGAGCGCAAACGTGCGATT-TAGCACTTCACAGGTTCTCTAAGTTTTTT------TTCAAAGCCGTGCAAACTGAGTGGAGAAAC--AAATCTAATTAAAAGTACAGAGC----AAAAAGTGAGAGGAAGTACTTGAGAAAGATCTAAACGTAAAGCTGAGATGTGGTGTAAAACTGAAAAGAGAAAAAA---ACTTTCCCA
s cb4.chrX              10665069 217 + 21540570 -------------------------------GTTGAG--------------------------------------------------------------------------------------------------------------------ACCTTGGGTATTGTCTTTACTTTGA---------AAACCTTTTCAAATAATTCGGTGAAGCGAGTACTTCTGATTGTTGCACCTCAC-------------CTCTT------TTTG----ggtgcaaa-----aaaagaaag--aaatctaattaaaagtacagagcaagaaaaaagaaaaaggaagtacttgaaagcg--ggaaaagtaaagCTGAGAGTTAGAGG-Agactgga-----aaagaagacttttcCCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104143 270 -  4500979 -------------------------------Attgagt----------------------------------------------------------------------------agtttttttttg----tttccgggtttttttct--tttttacttgagtattgtctcatttttcaacttttgagaaaTCTTTTCAAGAAATGCATTCAACCGAGAACAACTGATTTTTGCACTCGAAGTGAA------GGTTCCTAGCTAGTCTG----TGtgcaaa----gaaaagaaat--aaatctAATTAAAAGTACagagc-agaaaaaagtgagaggaAGTACTTGAAAGCGCTTCAAAAGTAAAGCTAAGATGTGGTAG--GGCTAGA-----AAAAA----CCTTTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52361 236 -    90967 ----------GGTTTCCGTCATTT---CTACCTCAGGC----------------------------------------------------------------------------ATTGTTCAAACG-------CCAGGTagtct-----ttcaaaa---------------------------------------------aatgctatGATGCGttaacttttgattttcgcACTTGAGACATGGTGCTACGCACGT------TTCG----TGTGCAAA----ATAGATGAGCCAAAATCTAATTAAAAGTACAGAGC----AAAAAGTGTGAGGAAGTACTTGAAG-CATTTCAAAAGTAAAGCTGAGATGTGGTGG--tactgga-----aaaaag---gttttctcG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3602574 271 +  4147112 ---------------AAAACACAC---CCACCATGACC----------------------------------------------------------------------------TTTGTCTAGCtg----tttccgggtttttttctggtttagACATGGGTATTGTTCATTATCCGAA--------GAAGTCATTCAGAAAGTGTCATCAAGCGTAAACTTGTGATTTTCGCACTTGAAGTGGGTT----CGCAAGT------TTCG----TTTgcaaa----gaagagaaac--aaatcTAATTAAAAGTACAGAGC----AAAAAGTGTAAGGAAGTACTCAAAGACGCTTCAAAAGTAAAGCTGGGATGAAGTGg--ggctgga-----aaaaaa---cttttctcg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   455511 302 +   823664 I

a score=45115.000000
s ce10.chrX              5317724 130 + 17718866 AAAAT-GGCAAGAAGCTGGACAAAAAAACTTAATTTCCTGTTTTTCCGGTGGAAAACAC---AAAACAGTTGGGTGGAA--TTTACGACGTTGCC--AGAATTTTA--CATTATCTAGTCAACAGAGAAGCTGTTACAGA--
s cb4.chrX              10665286 108 + 21540570 AAACT-GCCAagattctccaa-aaaaaacttaatttcCTGTTTTCCCGGTggagaaaacccaaaaacagTT-GATGGAA---TCAGAAGACTCGG--AGAACTTGA--gttctctaaa------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104413 123 -  4500979 AAACT-GCCAAGATGGTGgac-aaaaaacttaatttcctgtttttccgGTGGAAAACAC---AAAACCGTT-GATGAAG---TCACAGGATTTTTCCAGTGTTTGACTGACTTTtgaatcaaca--------ttttcaga--
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527     52597 109 -    90967 AAACTGGGGAAGATGCTGgacaaaaaaacttaatttcctgtttttccgGTGGAAAACAC---AAAACAGTT-GATGGAA---TCATGGGATTTTC--ACATTCTTC--GTCTA--------------------TTTCAga--
i caeSp111.Scaffold527  C 0 I 16
s caePb3.Scfld02_0       3602845 115 +  4147112 aaaCT-GGCAAGATGCTGGac-aaaaaacttaatttcctgtttttccggtggaaaacac---aaaacagtT-GATGGAA---TCATAGGATTTTC--ACAAT------GTCTActgaatcaaag--------ttttcaga--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   455813 114 +   823664 AAACT-GGCAAGTTGCTCGGAAAAAAGATTCGATTTCCTGTTTTTCCGGTAG----------AGAACAGTTGGATGGGAAGAAGAAAGAAGAATC--ACATTTTGC--ATTTAATGTTT-------------TCTTCACAAC
i caeJap4.Scaffold18194 I 302 C 0

a score=-1886.000000
s ce10.chrX              5317854 16 + 17718866 -TTGCGTACGAAAAAAG
s caePb3.Scfld02_0       3602960 10 +  4147112 -tttctc------taac
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194   455927 16 +   823664 TTTTGGTTGGGAGGAA-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10665394  0 + 21540570 C
e caeSp111.Scaffold527     52706 16 -    90967 I
e caeRem4.Crem_Contig0   2104536  2 -  4500979 I

a score=22761.000000
s ce10.chrX              5317870 259 + 17718866 -----------------------------CATGAA---------AAATGAATTGGAAAAAATGCATACACACCAAAACAGG--------CAAAATGAAGTG-AAAGT------------------------------------CAAAAAAGCGTGAGTTGCGGGTCGAAA-TGAAA-----------TTGG--TACCTTCTGGATAG-AAAAACTCTCTGCACTCATTGGATATCATCTCAGGCGTGTAAAT------------------GTCGACAAAGTGTTGGACAAGGTCAGGAAACCAGCAGTCAGCTCTCGAATA--------------------TAT--------GTGTATGTATGTTCTAGG-------------AATGTATAGTGGT---GTTTGA-GAAACGAATAGTCG
s cb4.chrX              10665394 243 + 21540570 -------------------------------------------------atttttaaagaa------------aaaaaagt--------aaagatG------AAAGT------------------------------------TGTAAA-------------GGTCAAAT--GAAA-----------TCGGTATACCTTCTGGATAG-AAAAACTCTTTGCACTCATTGGACATCATCTCAGGCGTGTAAAACTCGACGGGTCCCGGGGCGACG---AGGTTTC----------AGGAAGCCAG---------TTGGAATGGAATGTACAATGTCTCTTTTTAG--------GAGGACTGAGTTTTCGAGGTTTTCCGTGTCGAATGTATAGTGGT---GTTTG------AAAATAGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104538 217 -  4500979 -----------------------------------------------ttattttgaaataa------------gaaatagccacaaaaaaaaaaag------aaaatcatg-------------------------CGTCGTATGTATA-------------GGTCAAAT--GAAA----------CTCGG--TACCTTCTGGATAG-AAAAAGTCTCTGCACTCATCGGACATCATCTCAGGCGTGTAAAA------------------GTTG---AGGTTTC----------AGGAAGTCAG---------TTCGAATG--------------------TAT--------GCGGGGTGTTTTGTCGAG------------CAATGTATAGTGGT---GTTTGG--GAAAGAATAGTTG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold527     52722 217 -    90967 -----------------------------caT--------------ACAAATttgagagga------------gaagaagt--------gtaaaaataatataaagT------------------------------------AGTAta-------------gttcaaaa-tgaaa-----------tcgg--TACCTTCTGGATAG-AAAAACTCTCTGCACTCATTGGAGATCATCTCAGGCGTGTAAAA------------------GTCG---AGGTGTCA---------AGGAAGCCGG---------CCGGAATG--------------------TAT------gaccaaaaacttttttcttcttttctc-----gaaTGTATAGTGGT---GTTTGG---AAAGAATAGTTG
i caeSp111.Scaffold527  I 16 C 0
s caePb3.Scfld02_0       3602984 193 +  4147112 --------------------------------------------------------CGACA------------GAAgcgat--------atgaa--------aaagt------------------------------------tgtata-----------------------TAAA-----------TTGG--TACCTTCTGGATAG-AAAAACTCTCTGCACTCATTGGACATCATCTCAGGCGTGTAAAA------------------GT-----AGGTGTCAG--GGTGTCAGGAAGCGAA---------TTGGAATG--------------------TATATGCCGAACCGGGGGTAGTTTTTGGC-------------AATGTATACTggt---gtttggaaaaaagaatagttg
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18194   455943 261 +   823664 CGAGAAAACCGAAAACTTTAGATTTGAAGCTTGGAACTTTTTGGAACTAAActaaaaagtc------------aaaaatgc--------GTAAATG------AACGTGATACAACCAACCATACATACACCTGACCCATAATTCGTATA-------------GtttaagtttgaaaaaaaagtgcacttGA--TACCTTCAGGAAAGAAAAAAGTCTCCGCACTCATT-------------GACgtggaaaa------------------taaa---aagtga-----------AAGAAATAAT---------CTAGGCTA--------------------GCC--------------------------------------AAATAAATAGTGGTAACGTTTTG------AAATAGTTG
i caeJap4.Scaffold18194 C 0 I 22

a score=5837.000000
s ce10.chrX              5318129 29 + 17718866 CCCCGCGTTTCAACTCAGAGTCACAACAG
s cb4.chrX              10665637 16 + 21540570 C----CGTTTTAAC---------CAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104755 24 -  4500979 C---TCGTTTCAACCA--AGTCACAACAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52939 22 -    90967 C-----GTTTCAACCC--AGTCACAACAG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3603177 27 +  4147112 CCCAGTTTTCCAACCA--AGTCACAACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   456204 22 +   823664 I

a score=53043.000000
s ce10.chrX              5318158 83 + 17718866 ACTGGTGTGAGT----TT-----------------GAGACTCGACGTTTTGACTGGTTATGAAAAATTGGAACAAGAGAAATAAATGAATGG-------AAGACAGAAAGA--
s cb4.chrX              10665653 91 + 21540570 ACTGGTGGGAGTTGACTGCCAAAcacagagagaaagagaa------tttTGACtggatatgaaaaattggaacaagCAAAATAAATGAATGG-------TGGA-------A--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2104779 74 -  4500979 ACTGGTGTGAGTTGACTG-----------------GAGAC------TTTTGACTggttatgaaaaattggaacaagCAAAATAAATGAATGG-------TGGA-------A--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     52961 75 -    90967 ACTGGTGTGAGTTGACTG----------------GGAGAC------TTGTGACTGgttatgaaaaattggaacaagcaaaataaatgaatgg-------TGCA-------A--
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3603204 71 +  4147112 ACTGGTGTGAGT----TT----------------GGAGAC------TTTTGACTggttatgaaaaattggaacaagcaaaataaatgaatgg-------tGGA-------A--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   456226 83 +   823664 ACTGGTGCGTTTTGCGGT-----------------TGGTC------GCTGGTCGGgttatgaaaaattggaacAAGGAAAATGAATGAGTGGCCaagattgaa-------aaa
i caeJap4.Scaffold18194 I 22 I 285

a score=10416.000000
s ce10.chrX              5318241 39 + 17718866 GATCTTCCGCACAGATATGGAG--CATAAGTAGGAGAG--GAA
s cb4.chrX              10665744 41 + 21540570 GATCTTGAGTAAAGATATGGAACGCACCAACCACAGAG--GAA
i cb4.chrX              C 0 I 744
s caeRem4.Crem_Contig0   2104853 41 -  4500979 GATCTTCAGAGTAGATATGGAA--CACGAGGCAGAGAGTTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53036 32 -    90967 GATCTTGAGAACAGATACGGAA--CATGAGTGAA---------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3603275 32 +  4147112 GATCTTAAGAACAGATATGGAA--CATGAGTGAa---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   456309 285 +   823664 I

a score=8152.000000
s ce10.chrX              5318280 50 + 17718866 -------------CCTTCCCCTTTGTTTCGCCT---CGTTCTCTTGAT----ACTCTCCGGCTCTTTTTT
s caeRem4.Crem_Contig0   2104894 54 -  4500979 -------------CCTCCcctttcttttctattctacTTTCTTTTGATATGGA---TGCGGCTCTTCTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53068 58 -    90967 CC-----Cctttctcctctcttttctttctttttcacttcactttgat----a---ggcggcttttcttt
i caeSp111.Scaffold527  C 0 I 201
s caePb3.Scfld02_0       3603307 63 +  4147112 cctcccttcttcttcttttcttttctttcttctttacttttgtttgat----a---tgcggcttcttctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   456309 285 +   823664 I
e cb4.chrX              10665785 744 + 21540570 I

a score=-505.000000
s ce10.chrX              5318330 61 + 17718866 --TTCATTC---ACTACTTGTAAACTTATTACTCAAACGTGG------------------CACAACATGTGAACAA--------TATTAGAA-----------
s caeRem4.Crem_Contig0   2104948 95 -  4500979 -GACCACAC--ATCCACTTATACACCCATTGTTCAAAATAGGGCACGAGGTCAGAAGATATGTAGCAGG-----AAATGGtgtgaacaaaaatttcttttgaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3603370 61 +  4147112 tGCCCACCCCAAACCACTTGtacactcatttttcaaaattgg------------------tgaAACATA-----AA--------TACTAAAA-----------
i caePb3.Scfld02_0      C 0 I 319
e caeJap4.Scaffold18194   456309 285 +   823664 I
e cb4.chrX              10665785 744 + 21540570 I
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=1157.000000
s ce10.chrX              5318391 60 + 17718866 ATATAACTTATGACCCTGAGTTTGGTTTATTAAGAAAAC-ACCTATCGAACTTGCTATAAA
s caeRem4.Crem_Contig0   2105043 54 -  4500979 atataa------aaattgtattt-gttTATCCAGAAAACAACATCTCAGATGTgctacaaa
i caeRem4.Crem_Contig0  C 0 I 143
e caePb3.Scfld02_0       3603431 319 +  4147112 I
e caeJap4.Scaffold18194   456309 285 +   823664 I
e cb4.chrX              10665785 744 + 21540570 I
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=0.000000
s ce10.chrX              5318451 845 + 17718866  
e caePb3.Scfld02_0       3603431 319 +  4147112 I
e caeJap4.Scaffold18194   456309 285 +   823664 I
e cb4.chrX              10665785 744 + 21540570 I
e caeSp111.Scaffold527     53126 201 -    90967 I
e caeRem4.Crem_Contig0   2105097 143 -  4500979 I

a score=607.000000
s ce10.chrX              5319296 30 + 17718866 GCCCTAAATCGTTTAATTATGATACTCGGT
s caePb3.Scfld02_0       3603750 28 +  4147112 GTCCCAGATTACTTTA--ATGAAACTTAAT
i caePb3.Scfld02_0      I 319 C 0
e caeJap4.Scaffold18194   456309 285 +   823664 I
e cb4.chrX              10665785 744 + 21540570 I
e caeSp111.Scaffold527     53126 201 -    90967 I
e caeRem4.Crem_Contig0   2105097 143 -  4500979 I

a score=496.000000
s ce10.chrX              5319326 4 + 17718866 TAAA
s caeRem4.Crem_Contig0   2105240 4 -  4500979 TCAA
i caeRem4.Crem_Contig0  I 143 I 1
s caePb3.Scfld02_0       3603778 4 +  4147112 TCAT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   456594 4 +   823664 taag
i caeJap4.Scaffold18194 I 285 C 0
e cb4.chrX              10665785 744 + 21540570 I
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=35384.000000
s ce10.chrX              5319330 53 + 17718866 ----CAAAAAAGGAGTACAAAAGAATTGCCCCAAACCAGGATCGAACTGGTGACCTT
s cb4.chrX              10666529 51 + 21540570 ------caaaatagaaaaaaaagaattgccCCAAACCAGGATCGAACTGGTGACCTT
i cb4.chrX              I 744 C 0
s caeRem4.Crem_Contig0   2105245 53 -  4500979 ----tatagaaaaaggaaaaaagaattgCCCCAAACCAGGATCGAACTGGTGACCTT
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3603783 53 +  4147112 ----aaggagaaaaacaaaaaagaattgccCCAAACCAGGATCGAACTGGTGACCTT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   456598 57 +   823664 caaaagccaaaaaaaaaaaaaagaaatgcccCGAACCAGGATCGAACTGGTGACCTT
i caeJap4.Scaffold18194 C 0 I 2322
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=-165.000000
s ce10.chrX              5319383 2 + 17718866 AC
s cb4.chrX              10666580 2 + 21540570 TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105298 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3603836 2 +  4147112 TA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   456655 2322 +   823664 I
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=29971.000000
s ce10.chrX              5319385 52 + 17718866 GATCTTCAGTCGTACGCTCTCCCAACTGAGCTATTGAGGCAGACACTCTT---CC--
s cb4.chrX              10666582 51 + 21540570 GATCTTCAGTCTAACGCTCTCCCAACTGAGCTATTGAGGCACACACTTCTC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105300 50 -  4500979 GATCTTCAGTCTAACGCTCTCCCAACTGAGCTATTGAGGCAGACACACCG-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3603838 52 +  4147112 GATCTTCAGTCTAACGCTCTCCCAACTGAGCTATTGAGGCCGATACTAAG-AC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   458977 52 +   823664 gATCTTCAGTCTAACGCTCTCCCAACTGAGCTATCGAGGCACACATTTTC-----CC
i caeJap4.Scaffold18194 I 2322 C 0
e caeSp111.Scaffold527     53126 201 -    90967 I

a score=-12601.000000
s ce10.chrX              5319437 65 + 17718866 -----------------------------ATTGGTTTATAATTTGTACAC---------TATTGCGTGTTCT------CGTTC-TCTCACTAGTTTCTCTAGTTTCTGCC
s cb4.chrX              10666633 54 + 21540570 -----------------------------ACAGGTAACTTTTCAATACAC---------AACTGCGGGTTTT------CTCGTCTCTCCC------------GCCGCCGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105350 53 -  4500979 -----------------------------ATAGGTATCTACTCTTTACAC---------TATGTCGTGTTCT------CCCCT-TCTCTC------------ACTCTCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53327 51 -    90967 -------------------------------AGGTATCTTTCTGTTACAC---------TATAGCGTGTTCT------ccccc-tctcgc------------cccttccc
i caeSp111.Scaffold527  I 201 C 0
s caePb3.Scfld02_0       3603890 66 +  4147112 -------------------------------AGGTACACTCTCGATACATCTTCCCCCGTTTATCGTTTTCTGTCTCACTCcc-gttctt------------cttttcct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   459029 65 +   823664 AAACCCAATTTATGTACGTATAAAATGTCAAATGTTTATCACCATTATCA---------TGAAATGTGTTTG------CC------------------------------
i caeJap4.Scaffold18194 C 0 I 30

a score=-2500.000000
s ce10.chrX              5319502 23 + 17718866 CCCTCCAGTCACTTTCCTATCAC----------------
s cb4.chrX              10666687 26 + 21540570 TCTCACCACCGCCGCCCTCCGACATT-------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105403 35 -  4500979 TCTCGCCATGGCCTACC----ACATTGTGCGTGGAGGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53378 23 -    90967 cctacccccGACACTCCCATCAC----------------
i caeSp111.Scaffold527  C 0 I 6
s caePb3.Scfld02_0       3603956 23 +  4147112 ccctGCTCCCACTTTCCTATCAT----------------
i caePb3.Scfld02_0      C 0 I 19
e caeJap4.Scaffold18194   459094 30 +   823664 I

a score=-2230.000000
s ce10.chrX              5319525 16 + 17718866 GACG-TTATTGCAATTG
s cb4.chrX              10666713 15 + 21540570 --CACATGTCGAAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105438 17 -  4500979 AACATCTAGTAGAATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53407  5 -    90967 -----CTAGT-------
i caeSp111.Scaffold527  I 6 C 0
e caePb3.Scfld02_0       3603979 19 +  4147112 I
e caeJap4.Scaffold18194   459094 30 +   823664 I

a score=54415.000000
s ce10.chrX              5319541 163 + 17718866 ACTCACGTTGTTAT--GTGTGGTTTCTAGGATCCGAGCCAGATGGAAGTAACTAGCAATTGTTGAAATGGAACACTGAAGAGAAATT-------GAAGCGGATTTTGGAA--------TTATATACTCAG-AAAAATATGCTATTCTCTATTCCT---------------------ATATTTTTCGTCGGCTCTTTTTCT-CA
s cb4.chrX              10666728 156 + 21540570 ACTCACGTTTGAAt--gtggtttttgaaataacaGCGCCAGATGGAAGCTAC---------TTGTAAAGTg--aatg----ggaattttttttgagaaagaaaatcgaaattataTAGATATATACTCACTAAAAACATA-------CTATCGCA---------------------TTATTATTCATCGGCGGCTCTTTT-C-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105455 154 -  4500979 ACTCACGTTATTAT--gtggtttttgaagaaactgcGCCAGATGGAAGCAACTAGCAATCGTTGAGAAGAG--AATAATGTGGAATTTT-----GGAAAGATGTTCAGAA--------ATATCTACTCAC-AAAAACATA-------CTATTCCT---------------------ATATTTTTCAT-AGCATTCTTTTT-C-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53412 155 -    90967 ACTTACGTTATTAT--GTGG-TTTCAGAATATCACGACCAGATGGAGGCAAGTAGCAATCGtcgtgaaaaa--aataatgtgG-ATTTG-----GGAACGAAATTTAGAA--------TTATATACTCAC-AAAAGCACA-------CTattctt---------------------atatttttcatcgCTATTCTTTTCACA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3603998 152 +  4147112 ACTCACGTTATTGT--GTGG-TTTTGAACGATCAGTGCCAGATGG----AACTAGAAGTcgtagaaaagaa--aataatgtgGTATAca-----gcgaaaaattttggaa--------ttataTACTCACTAAAAACATA-------CTAttcct---------------------atatttttcatcggcactcttttt-tt
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold18194   459124 155 +   823664 ACTTACGTTATTGTCGATGG---------------CACCAGATG-------CTAGCAATCGTAGAAGAGAG--AATAATGTGGAATAT------GGAAAGAATTTCGGAA--------TTATATACTCGCAAAAAACATA-------CTATTTTCCTCATACTACGCCacctaaaaattttcttcatcGTCGTCCTCCCA---
i caeJap4.Scaffold18194 I 30 I 17

a score=-137.000000
s ce10.chrX              5319704 34 + 17718866 AATGTTCTCAAAAATTTTGCACAAGAATGAAAGT
s cb4.chrX              10666884 11 + 21540570 ------------GAT-----AGA------AGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105609 16 -  4500979 -------GCAGTGAT-----GGA------AGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53567 22 -    90967 -------ATGATgat-----agaagaaagagagt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3604150 22 +  4147112 -------tcaatgat-----ataAGAAAGAGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   459279 17 +   823664 I

a score=29412.000000
s ce10.chrX              5319738 186 + 17718866 -TTTG----------GCTACATGAACAAGAATTCTAGATGAAATATAGTTATGTGAATATCTTC------TAAGAAATAAATTCTTA------------TAACAATGGAT---TATTGAAGAAAAAAATTATATATAGTAAA-----TGA------A-ATGACTATAAAG---GAGAAGAACAAAAAAAAGA---------------ACAAC-ATGCAAAACAAAAATACGGAGAAACAATTTGTAAGA
s cb4.chrX              10666895 205 + 21540570 -GGAGAATACATATTCTGCTGGGTGGAAGAATTGTGAATGAAATATAGAACTATGCTAtttttttGCCAGGATTAAAGAT------G------------GAACAAAGAAATTGGGTTGAAGG----------ATATAGTAAA-----Taaaactgga-accactaaaaaaatctaaaagaacaacaacgaag---------aaaaaagagtcaatgcaaaaagaaaatagcgcgaaacGATCCGGAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105625 175 -  4500979 -TTGG---------TCTAACATGAGaaagaatttttaatgaaatatggaaatataaaaatctt-------aaCGGAAAAT--TTTGG------------TGACaaagaaa--------aagg----------ctatagtaaa-----taa------t-accactaaaacg---taaaagaacaaaaaagaaa---------gagaaaaaagc-atgtaaatagaaaatagagcgaaaCGATCCGTAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53589 181 -    90967 -tTGA----------CTAACATGAAATAGAATCATAAAtggaatataaaaata----------------------aagatatTCTGGAGAAGAATTTCATGACAAAG------AGTGGAAGA----------AAATAGTAAA-----TAA------ACACTACTATATCg---tgaaagaacaaaaagaaga----gagaagaaaaaagaac-atgtaaataggaaataaagagaaacgaTCCGTAAGG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3604172 180 +  4147112 -TTGG----------CTAACACGGAGAAGAATTCTAAATGAAATATGGATATAc----------------cattgaagattttttgg------------taACAAAGAGA---AGTGTAAGA----------ACATAGTAAA-----TAA------A-ACCACTATAACg---taaaagaacaaaaaaaaagaactaaaaaaagagaagagc-atgcaaata-aaaataaagcgaaaCGATCCGTAAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   459296 190 +   823664 GTTGG----------ataac--gaaaaagaaaagaaaaaaaaagatcggTTTGTTTAAGTTTTGTTGGCATAATGAGTTGATTT---------------TGAGAAAGGAA-----GTGATTG----------Ataaagtgaattttttaa------a-aatagatgaaaa---aaaatgagcaaaaaaaaatgagcatgGAGATAGATGCAA-GTGTAAAATGGGAATaaaacaaaa------gcaaaa
i caeJap4.Scaffold18194 I 17 I 35

a score=3968.000000
s ce10.chrX              5319924 36 + 17718866 -GATGAC-AATTTGTATAAGGAATCGGAGATGTC-----------TTCG
s cb4.chrX              10667100 37 + 21540570 CAATGACAAAATTATTCTAAGACTC-------TCTTCTTT-----CCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105800 42 -  4500979 -GATGAC-AATTTGTAGAAGAAGTCGGAAAAATCTACTTC-----GACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53770 47 -    90967 -GATGAC-ATTTTGCAGGAGAAACCACAAAAGTCTACTTTTTAGATCCG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3604352 38 +  4147112 -GATGAC-A------AGAAGGAGCCACAAAAGTCTACTCC---GATCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   459486 35 +   823664 I

a score=66835.000000
s ce10.chrX              5319960  93 + 17718866 GACGGCG----ATCCGCCTT---------CCCCTATAATCATTTTAACTGGT--CTCACATCTTAAGACTCTG-CCATCGGGCTTTAAGAATGCAATTTGTAGC--AACAC
s cb4.chrX              10667137  87 + 21540570 GTTGTCG----------------------CCCCTATAATCATTTTAACTGGT-CCCCACATCTTCTGACTTTGCCTATT-GGTTCTAAGAATGCAATTTGTAACGGGGCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105842  91 -  4500979 GACGGCGATCCTTCCGCCCT---------CCTCTATAATCATTTTAACTGGT--CCCACATCTTCAGA------CTATT-GGCTCTAAGAATGCAATTTGTAAT--GGCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53817 105 -    90967 GTCCTCA--CTTCCCGTCTCGCCACCCCATCCCTATAATCATTTTAACTGGTGCCCCCCATCTTCAGACTTTG-CTATT-GGCTCTAAGAATGCAATTTGTAAC--GACAC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3604390  95 +  4147112 GTCCTTT--TCTCCCGTCTT---------CCCCTATAATCATTTTAACTGGT-CCCCACATCTTCAGATTCTG-CTATT-GGCTCTAAGAATGCAATTTGTAGC--GACAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   459521  99 +   823664 GACGGCA---CATTCGCTTCGGGAAG---ACCCTATAATCATTTTAACTGGT-CCCCACATCTTCAGACCCTG-CTATC--GCGCTAAGAATGCAATTTGTAGC--GGCGC
i caeJap4.Scaffold18194 I 35 I 405

a score=1577.000000
s ce10.chrX              5320053 78 + 17718866 AA--GAA----------ATATCGC-GGCGGAACTTTC-------CGCCTAGCCAAAA--TTT--CAAAAACGATTATGCTA---GATAAGTACGTC---TTTGGGATT
s cb4.chrX              10667224 93 + 21540570 CACCCAAGCAAATGTCCACACTTT-CTCGGACTCCT--------TGTTA-CGGAAAT--TCTCCCGA---AAATTAAACTGGTTGATGAATAGTAcacttttcgaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2105933 91 -  4500979 GA--CAAGAAAACGTCCAAATTTC-CACGACCCCCCGTCCTAGATGCTC-CGCAGAT--TCT--CGA---CAATTATACTG---GATAAGTACTAC---TTTTAAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     53922 89 -    90967 AA--ACGCTAAATGTCTACATTTTCCGCGAGGCGCTG-------CGTAC-GGCAGAT--TCT--TAA--CCAATTATACTAGTATGTAAGTACTAC---TTTTAAATT
i caeSp111.Scaffold527  C 0 I 365
s caePb3.Scfld02_0       3604485 88 +  4147112 GA--AGGCTAAATGTCTACATTCT-CGCGAGTCATTG-------CATACGGGCAGATTCTCT--CGA--CCAATTAGACTAGTA--TAAGTACTAC---TTTTAAAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I

a score=-7218.000000
s ce10.chrX              5320131  70 + 17718866 -----------------------------------GGCTTACATT-----AGATGAACATTT-----------------TTCGGAGGGTGTCAAGG---------------GACTTTGCGGTTTGCGGGTTACAATTAAATT
s cb4.chrX              10667317 132 + 21540570 tggaaCTACGCAGTACTTCAATCGG----GCAGTGGTTCAGTATCAAGGGAAATGAGTTctttagttttgaaattaggTTTCGGAAAGGGGTAAGTGGGAGAAAGGTTAGTGGTTTTGCGGCGTG------ACAATGAAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2106024 109 -  4500979 CAGGAAAACG-----CTTCAATCGGTAGAATAGTAGTTCAGTATCAAGGGAAATGAGTTCTTTAG--------------TTTGAAATTAAGTTTGC--------AGTTTGTGGTTTTGCGGGTTG------ACAATGAAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3604573  49 +  4147112 -----------------------------TCAGGAGGACAACTTC------AACGAATACTACAA--------------T--------------------------------------Cggtaag------aaaatgaaact
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I

a score=4063.000000
s ce10.chrX              5320201 38 + 17718866 TTATGTG----CTTCATTATCACTCAACGGTAATAGGTTTGT----
s cb4.chrX              10667449 46 + 21540570 TTATGTGGCTTTTCGGTTATCACTCAAAGTGAATAGGTTTTTTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2106133 38 -  4500979 TTATGTG----CTACGTTATCTCTTAACGATAATTGGTTTCT----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3604622 13 +  4147112 I
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I

a score=-2103.000000
s ce10.chrX              5320239 37 + 17718866 ---AGTGGAGTGTTTAGAA-AAATAA-------GTGCTAAAAATCAGA
s cb4.chrX              10667495 35 + 21540570 GGTGGCcccatttttcaatcaaa----------gTGCCAGAAATT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2106171 37 -  4500979 GATGGACCAATTTTAAAAG-AAG----------GTGTCAGAAATCAAA
i caeRem4.Crem_Contig0  C 0 I 172
s caePb3.Scfld02_0       3604635 37 +  4147112 ---agttCAGTGTCAAGGG-AAATGAGTTCTTTGCGTTTGA-------
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I

a score=-8971.000000
s ce10.chrX              5320276 201 + 17718866 AATCATGAGTCCAGGTT---GTGAAAAAAACGTTAT-----GAGAGGGAAATTTTATAGTTTA------TCGATCAATTTACTGGAGAAGTTGATTTTTAATATTTTTAATATGATGTAATGTTTTAGATGCTGTTGATTTTACGCGGTAAAAGTGGATAAATTTTTTTGAATTGCAAATCGTTTTGTATAGATTATCGGTCGTTTTTATCGGAA-
s cb4.chrX              10667530  97 + 21540570 --------------------ATCAGAGGCAAGTTGAGA---GAAAAGGgagttttagaaattg----------------------aggaa---agttttaa----------------taa-atatc-----------------------------agaaaaatggtTGTCAAT-------------------------ATTGGTAattatcataaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3604672 151 +  4147112 ----ATTAGTTTTGCTTGCGGTTGGAGTAGTTTTGCGGCATGacaatgaaaatttatgagtAGCACTTATCATTAAACGTAGTCCAAGAACCTATTTTCAA----------------TAATGTATCGGAGACC------------------AGGTAGAAAGAAAGGtagaaat--------------------------ttggattttctcGGGA-
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=-406.000000
s ce10.chrX              5320477 111 + 17718866 ATTTAATTTTTATTTATGAGGTCTACAATTGCTACCATAAACTTTAAGTAATTTTCTCGTGGCGAGACCCATTCTAATTAATTCATTCGT---CCTTAAAGGTGGACTACGGCC
s cb4.chrX              10667627  94 + 21540570 attcaat------------------agatttttacaaaaatctaCAAAGaattctattttgaaaataaagattCCGGTTAAtagttccagaaatttcaaaaaaaaattaagg--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3604823  39 +  4147112 I
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=-5932.000000
s ce10.chrX              5320588 124 + 17718866 TATGAGGGGAAATTAATTGAAATGCATTTCTATGGTACTAATTTGTTTTATCGGGAAATTGCTTTTTTCAATGATTTGGAAGTCGTCAATCAAT---AATAACATTTTTCTTTCAG-----TTTTATGTTTT
s cb4.chrX              10667721 104 + 21540570 -atctagaaaaatta---taaaggCATATCAA---TATTaagtaaattt-ttgaga---------ttttaaccGTTTGCAA------AATCGAACCGAatagaatttctgaagaaa-----atttaTGTTCT
i cb4.chrX              C 0 I 42
s caePb3.Scfld02_0       3604862  81 +  4147112 ---tgaaaaaaaaaa---taaatgaaaa-----------------------tgaaa---------ttccaagAGCAGGTAG------AGTCCAA-AAACTAGTGTTTTCTAAGAGATAGTGACTTA------
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=11.000000
s ce10.chrX              5320712 61 + 17718866 AATTGTGTTTAAATTATTCATGTTTC-----------AACATTTTAGGGA-TTTGAACGTCCGGCAG-------TGTTTT
s caePb3.Scfld02_0       3604943 80 +  4147112 AACCAAATTGGGACAAATCATCTCTCCAAATTTGCAGAACAATTGAGGGGCTTTCAATGGTCGGAAGCCagagattttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I
e cb4.chrX              10667825 42 + 21540570 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=-2571.000000
s ce10.chrX              5320773 100 + 17718866 AAATTTCTCAAAAAAaaaaattgaaaaattagttttcacctctttttgactggaagtataaacattccaaaattgttttagaa-ttgtt---a--ttatcata---------------ttt
s cb4.chrX              10667867  78 + 21540570 atatattttaaaattaaaaattacaaa----------------ttccagaaagaag-aGGATTATACAAAAAGTAT-----AGCTTGTT---AATTTGTC------------------TTT
i cb4.chrX              I 42 C 0
s caePb3.Scfld02_0       3605023  87 +  4147112 -gaatttttagaatacaaaactttgaa---------------------------------aattttcaaaatctgttctTGAGTTTGTTGCGAACTCGTCATGATTTTTCCCACcttattt
i caePb3.Scfld02_0      C 0 I 99
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=-915.000000
s ce10.chrX              5320873 93 + 17718866 ggtcat--tttagcatcaaaagtctgagtttcaataattcccctcacaggacgtaatccaattttaaGTTTACACGTACACGATACTGCATAATT
s cb4.chrX              10667945 53 + 21540570 GATTATTCTTTAG-----------tgaattttcattgttt-------------taaccttattttaa------------aaaat------ttatc
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3605110 99 +  4147112 I
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=-6280.000000
s ce10.chrX              5320966 168 + 17718866 ---TAAATTTTTCCAACATTATTAAAAATGGTATTTTTGAAAAGTTTTGTTCTAAAAGAAAGTTTACATTTATCAAATTCAATTATCAAACATCTATTTGCAATGATTCACTAAAAACGGAGCTTTTAGTTTTTTTATTCTAAAGTTGAAAAAGAGCAA-----CGAATTTGAAGT-
s cb4.chrX              10667998 131 + 21540570 caATTTATTTCATCTTTAATAC--GACGTGATATTTCTC------------------------------TCATCGAGAACAAAAATTACACA---------AAgtactca--aaaaatgttgcatCT--CTTTTCAAGTTGCTCTCTCAAGAAGACTGACCCAAAGAATAAGAAGA-
i cb4.chrX              C 0 I 4
s caePb3.Scfld02_0       3605209  93 +  4147112 ---TGTATTTTCTCAATAGTAT--ACAATTatattgttg------------------------------tttt----gtttattATTGAACA---------ATATCCTCAC-AAGAACTATTCATCT--TT---------------------------------GGAACGAAACGCC
i caePb3.Scfld02_0      I 99 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=0.000000
s ce10.chrX              5321134 4 + 17718866 TTCA
e caePb3.Scfld02_0       3605302 0 +  4147112 C
e caeJap4.Scaffold18194   459620 405 +   823664 I
e cb4.chrX              10668129 4 + 21540570 I
e caeSp111.Scaffold527     54011 365 -    90967 I
e caeRem4.Crem_Contig0   2106208 172 -  4500979 I

a score=39863.000000
s ce10.chrX              5321138 125 + 17718866 AATAAAAAATCT--------AAGTAGTTTGAGTTCAACCTCAAACCA----AAACTAAACTTACTGCTTCTTGGCGTCGAGGAATCTGAATACATGGCGACAGGCTATAGAGATTCAATATGATTTATTTCGCACC-G
s cb4.chrX              10668133  97 + 21540570 CCCAAAAAACCACAA-------------CATGG------------------AAAATGGACTTACTGCTTCTTGGTGTTGAAGAATCAGAATACATGATGACAGCA-GT---------ATATGATTTATTTCGCACCGa
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2106380 129 -  4500979 aacaagaaaacaaga-----gaGTT-TTCATGATAATTGTATGACCACAATAAAAAAGACTCACTGCTTCTCGGTGATGAAGAATCAGAATACATAACGACAGCC-AGGGAGATTCAATATGATTTATTTCGCAC--G
i caeRem4.Crem_Contig0  I 172 C 0
s caeSp111.Scaffold527     54376 129 -    90967 AATGAAAAGTTCAGGTAGCAAAGCA-TTCAAGTTAATTGTAAGGCC-------AAAAGACTCACTGCTTCTCGGAGATGAGGAATCAGAATACATGATGACAGCCAAAAGAGATTCAATATGATTTATTTCGCAcc-g
i caeSp111.Scaffold527  I 365 C 0
s caePb3.Scfld02_0       3605302 116 +  4147112 -AT-----------------AAGTA-TTCTAACTAATTGTATGACCACAA-ATAAAAGACTCACTGCTTCTTGGTGTTGAGGAATCAGAATACATGACGACAGCC-AAAGAGATTCAATATGATTTATTTCGCacc-g
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   459620 405 +   823664 I

a score=53075.000000
s ce10.chrX              5321263 58 + 17718866 TTGTTTTCTTTCTGTCT------------CCTATCCTTTATCT-----C-AAATGATTGATACCACCACAACGTAC
s cb4.chrX              10668230 76 + 21540570 ttgttttctcttctttttctcaaccCCAACCTATCCTTTATCTATCTGCGAAATGATTGATACCACCACAACGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2106509 60 -  4500979 ttgtttcctttctttttt-----------cctatcCTTTATCT-----CAAAATGATTGATACCACCACAACGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     54505 59 -    90967 ttgttttctttcttttt------------cctatcCTTTATCT-----CAAAATGATTGATACCACCACAACGTAG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3605418 55 +  4147112 ttgttttctttcttttt------------cctatcCTTTATCT-----C-AAATGATTGAT---ACCACAACGTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   460025 58 +   823664 tcattttctcacCTAGT------------CCTATCTTTTATCT-----C-AAATGATTGATACCACCAAAACGTAC
i caeJap4.Scaffold18194 I 405 I 181

a score=75884.000000
s ce10.chrX              5321321 167 + 17718866 GAAT-GGGTAG-AGATAAATGAG-C-CTCCCCCTTGC-TCAAAGCAT-GGAGGGCCTC--------TCTCACG------TTGACAGACTTTGTCCCACAACCGAGTTATTGCAAATAGATGAACTCAGTCTCAAACTCAAATGAACTATTCTCGTTTCA--------ATTTTCTCTT---CCCCTTTTCTTG----TTTGCA
s cb4.chrX              10668306 185 + 21540570 GAAT-GGGTTGTAGATAAATgagcctctctctctctc-tcagagCATGGGAGGGCTTC---ACCCGTCTTACGTTGAGATTGACACACTTTGTTCAACAACGCAGTTATTGCGACTAAATGAACT--GATTCGAACT--------CTTTTACCCGCCCACCTCCT--TATTTCAATTTAGTCCTTCTTCTTTTGCATTTGCA
i cb4.chrX              C 0 I 1358
s caeRem4.Crem_Contig0   2106569 171 -  4500979 GAAT-GGGTAG-AGATAAATGAg-ctttctcctcttc-tcaGAGCAT-GGAGGGCTCT-GGGTGAGTCTCACG------TTGACAGACTTTGTCCCACAACTAACTTATTGGATATAAATGAACT--GATCCGAACT--------CTCTTCCCGCTTCTCCaccc--attttcaatt---ttctttttcttt----cttgca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     54564 176 -    90967 GAATGGGGTAG-AGATAAATGAg-ctttctcctcttcttcaaagCAT-GGAGGGCCCAGGGGCGAGTCCTACG------TTGACAGACTTTGTCCCACAACCGAGTTATTGCAAATAGATGAACT--GATCCGAACT--------CTCTCCTCCCTTTTTCCCCTCtcctttcaatt---ttcttcttcttg----tttgcA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3605473 156 +  4147112 GAAT-GGGTAG-AGATAAATGAg-ctttctcctcttc-tcagAGCAT-GGAGGGCTCG-----GAGACTCACG------TTGACAGACTTTGTCCCACAACCGAGTTATTGCAAATAGATGAACT--GATCCGAACT--------CTCTCTCCc-------------cctttcaatt---ttctctttcttg----tttGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460083 181 +   823664 I

a score=9229.000000
s ce10.chrX              5321488 76 + 17718866 ----------TCCTCCACGCAATTGCATTGTAATCACTGTTTTTACTCTAACTTTTTGAAGAAGTCTTTTTTGGATTCACAAAAAA
s caeRem4.Crem_Contig0   2106740 75 -  4500979 ----TCCTGCATTTGCACTCAATTCAATTGCAATCACTGTTTTTACT------ATTTTGAGAAGGAACTTgttctttccaaaaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     54740 71 -    90967 TTCATTTTGCATTTGCACTCAATTCAATTGCAATCACTGTTTTTACA------TTCTGAAGAAGGAAC----AACTTCTCA-----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3605629 69 +  4147112 TCCG-TTTGCATTTGCactcaattcaatttcaatcactgtttttacatt--ttttttgaaggaggaAC---------CCAA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460083 181 +   823664 I
e cb4.chrX              10668491 1358 + 21540570 I

a score=3383.000000
s ce10.chrX              5321564 13 + 17718866 AAAATGTCTCTCA
s cb4.chrX              10669849 13 + 21540570 aacaagtgtctca
i cb4.chrX              I 1358 C 0
s caeRem4.Crem_Contig0   2106815  9 -  4500979 ----tgtatcTCT
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold527     54811 13 -    90967 AAAAcgcctcttc
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3605698 13 +  4147112 AAAACGACTCTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460083 181 +   823664 I

a score=-2162.000000
s ce10.chrX              5321577 26 + 17718866 AGTAA-----CTTCAACTTTT---TTTTCTGAAC
s cb4.chrX              10669862 26 + 21540570 -atac----ttttcagccccc---ccTGGTAAAG
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold527     54824 27 -    90967 --ttc--atcttccagTTCTC---CGTACCAAAC
i caeSp111.Scaffold527  C 0 I 2
s caePb3.Scfld02_0       3605711 32 +  4147112 --TCCTGCTCTTCAAGTTTCTTCGCGTACCAAAC
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194   460083 181 +   823664 I
e caeRem4.Crem_Contig0   2106824 35 -  4500979 I

a score=9756.000000
s ce10.chrX              5321603 27 + 17718866 ACCCAAATCAA----ATCATATACC--CGCTCG
s cb4.chrX              10669893 32 + 21540570 AATCAAATCGACATCATCAAATTcta-tgttca
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2106859 26 -  4500979 AACTAAATCAA----ATCATGTCC---CGTTCG
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold527     54853 29 -    90967 TACCAAATTGA----ATCATGTTCTGACGTTCG
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3605745 26 +  4147112 AACTAAATCAA----ATCATGTTC---CGTTCG
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194   460083 181 +   823664 I

a score=45029.000000
s ce10.chrX              5321630 146 + 17718866 AAAATCAGA----AAGCTATACGGGCATTAGTGCGTTGCGTTCGCA-----C--------AAATGGAGCAGT-------TACTTGTCATCAAATTG---------TGCTCTAAACACACTCTCGCGCGCA----AGAGAAAGTTACGTAGTCATTATAATGAAGTTACG-TATTCCCCAGAGGT
s cb4.chrX              10669925 121 + 21540570 aaaatcata----aagcTATACGAACATCCAAA-----CTCTCAA------------------------AGT-------TACTTGTCATCAAATTGGGTGTGTGTTGCTCATATC--------------------TCG--AGTTACGTTGTTATTATAATGAAGTTACA-TAGTCCCTCGGGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2106885 133 -  4500979 GAAATCAGA----AAGCTATACGAACATATTAG-----TATATAac-----cagagagagagagagagcagt-------TAGTTGTCATCAAATTG---------TGCTCTTCTT--------------------GAGAAAGTTACGTTGTTATTATAATGATGTTACG-TATCCCCAAGGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     54882 129 -    90967 GAAATCAGAGAGTGAGCTATACGAAGGTTAGTA--------CCACT-----C--------AAAAAGAGCAGT-------TACTTGTCATCAAATTGAGTCCC---TCCTCTCAGT------------------------AAGTTTCGATGTTATTATAATGAAGTTACGTTGTCCCCAGAGGGT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3605771 134 +  4147112 GAAATCAGA----AAGCTATACGAACATTAGTA-----TATTCACT--------------AAAAAGAGCAGT-------TACTTGTCATCAAATTGGGG------TGCTCTCAGT-CACTTC------------GAAGAGAGTTACGTTGTTATTATAATGAAGTTACG-TATCTCCCAAGGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   460264 155 +   823664 AAAATCAGA----ATGCTATACGAACATGAGTT-----CGCTCAATTCTTCC--------AAACCCCGCCATAATATAATACATTTTATCAAAAT----------AGCACTCAAT-CCGAGTAGCGAGAATTGTGAAAAGAATTACGTTATTATTATAATTAGGTTACC-AGTTCCCAGGGGGT
i caeJap4.Scaffold18194 I 181 I 1037

a score=8694.000000
s ce10.chrX              5321776 148 + 17718866 TGC-ACAGTAGTTCA---------------AAAGTGTTCC---CGTTCTTCTTTTCTAA---------CGTC--TATGTAGTCAAGATCTCGACAAATTAGTTTCACTGACAG-AATGGAGGGGGAGGGGGAAGCGCAGTCATGCGTGAACGTGAAAAATTATTGGAGG-------------TCCA--TCAAAT
s cb4.chrX              10670046 155 + 21540570 TCA-ACAGTAGT-CG-------TG-----------GTTCTACCCGTTC-GCCTTGAGAGGGGCCCTGCCGTT--TACATAGTTG-------TTCTGATGGAGCAGACTAGAAGCTATGGGAA------TGGGAGTGCAGTGAGGCGTGACGGTGAGAATTTGA---TGGCGATAGTGAGTATTCCGATTGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2107018 140 -  4500979 TCG-ACAGTAGTCCG-------TAC--CCAAAAGCGTTCCCTCCGTTC-----TGGTAG---------CGTT--TATATAGTTGAGG-CACGCCAAATTTGTTAGGCTCAAGGCTGTGAAA---------GGGGTGCAGCGAAGCGttacaatgaaaaattgg---tgg-------------TCCA--TCACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     55011 142 -    90967 TCAAACAGTAGTCCG-------TGCTTTTGAAAGTGTTCCCG-CGTTC-----TGGCATG--------CGTTTATATATAGCCGAGA-AACGAAGATTTGGTTAGGCTCATGCCAAGAGA------------GAAGCAGCGAAGCGTGTCAGTGAAATATTTA---AGG-------------GCCA--TCAAAT
i caeSp111.Scaffold527  C 0 I 283
s caePb3.Scfld02_0       3605905 158 +  4147112 TTGAACAGTAGTCCGTATGCGCTGGTTTCACAAGTGTTCCT--CGTTC--TTTTGGTGT---------CGTT--TATATAGTTGAGA-AACGACGAACTGGTTAGGCTCATACCCATCGAAA-----CCGGGGGAGCAGTGAGGCGTGACAGTGAAATATCTATAGAGG-------------ACCA--TCAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460419 1037 +   823664 I

a score=2997.000000
s ce10.chrX              5321924 45 + 17718866 TGGGACACCCACATAGAATAGTGAAAGAGATAACTGATCGAGATT
s cb4.chrX              10670201 35 + 21540570 -------GCCACGTAATAAAATGGTAAC---AGCTTAGTGAGATT
i cb4.chrX              C 0 I 981
s caeRem4.Crem_Contig0   2107158 35 -  4500979 -------TCCACGtattaagagaaaaaa---aacttattgagATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3606063 28 +  4147112 -------GCCACGTAATAAAACAGAAGA---AGCTGTT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e caeSp111.Scaffold527     55153 283 -    90967 I

a score=732.000000
s ce10.chrX              5321969 10 + 17718866 TAAATTAAAT
s caeRem4.Crem_Contig0   2107193 10 -  4500979 AAAAGAAAAT
i caeRem4.Crem_Contig0  C 0 I 328
s caePb3.Scfld02_0       3606091 10 +  4147112 TAGATTGGAT
i caePb3.Scfld02_0      C 0 I 295
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeSp111.Scaffold527     55153 283 -    90967 I

a score=0.000000
s ce10.chrX              5321979 264 + 17718866 TCTTGAATTTATATGTTATTCAAACGTTTCACGCCGTTTAAACAACAGAAAAATCGAATTTTCTGAAATGTTTCTGCTTTTAGTTTTTTAATCCACCAGTGCCTACACCTACAAACTTCCAGCCCTTTCGCGGAACCTGAAATGTCGGGCGTTGCGCAATTGTTCAGGCTATTTTAGGTACTGATAAACAGTCGGTAGTCATGCATGTAGGTAGGCTAGAGCCAGGCACGGATGTCTGAAGTCTAGCCTACCTACAATAAATTT
e caePb3.Scfld02_0       3606101 295 +  4147112 I
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeSp111.Scaffold527     55153 283 -    90967 I
e caeRem4.Crem_Contig0   2107203 328 -  4500979 I

a score=-772.000000
s ce10.chrX              5322243 448 + 17718866 TTTGATCAAGTTATTCAAAT--CAGCATCCATGATGGGCGGCAATTGtttttggcaattctacaaaatgacctattgcgccatgccttaaaaaatagtgtcgagttataggaaattatttgttttatctattaatgacatttatttctgctcaaacattcgaaaaaatgctcaaaaatttcctgaacgt-------tgtcaattgacgagaaacacaactcaataatttgatagtttgacattgacaactttctggcaatttttgacaacttttttcaaa-----tgataaataatatttttttttaaaaatcaagcagttttctatgttttcacacttataaattcaaaaaatatttcaaaaaaaaacggcgcaataggtcttttgtaTAATTGCAGCTCACCCTGATCAAGGTAGATTTCCAGCAAAAAAACAAGTAAAAGCAACTTCCAAAAAACTACA
s caePb3.Scfld02_0       3606396 368 +  4147112 TTCGATAGAAGTTTTCAAGCTGTAAAGTCCATAAAAACAGACTATGGTT------ACTTTTGGATAATGAAAAGATTAGCCCCATCTTTGAAATTAATGAC---CCAGgtgaagtaattttttttcgtttttgaatgtgtttactttgtttgaagttgttgttaaacctttt----tttttctgaatttgaaataacACTAATaatcgagaaaaagagataaaca-----------------TAACTATTCTATCAgaacttctt----ctcttttcaaacttcttgataattcattcaattttttgcaaagttagcgatttttc---------caatctcaaactgaaaaa---------------------------gtcTGTTTTG-----------------GATC---GTAAACTTTC--CAATACTGAAAGTATA--CATATTTCAAAAGTCCACC
i caePb3.Scfld02_0      I 295 I 148
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeSp111.Scaffold527     55153 283 -    90967 I
e caeRem4.Crem_Contig0   2107203 328 -  4500979 I

a score=0.000000
s ce10.chrX              5322691 111 + 17718866 TTTCTGAGATCGAAATGTTCTCAAACTGGGCGTCGAATAATTTGAGTGTTTTGCTGTTGGTGCTTCTACACATTCAGTTAGCAGATTTTTTGCGTTCAAAAATTTTCATTT
e caePb3.Scfld02_0       3606764 148 +  4147112 I
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeSp111.Scaffold527     55153 283 -    90967 I
e caeRem4.Crem_Contig0   2107203 328 -  4500979 I

a score=1233.000000
s ce10.chrX              5322802 80 + 17718866 TTTCAAATTTTATTTTCTTTTGATTTTTCCAAAAACGGGAGAAATTTCTAGAATTATACAAGT-CCAGTTAATTGTAGCAA
s caeSp111.Scaffold527     55436 76 -    90967 tttcaaatcgtatcatatctt----cttcaaaaagtgcaaaaaagtgtgaaaacTG-ACAGGTGtcaatgaattttgataa
i caeSp111.Scaffold527  I 283 C 0
e caePb3.Scfld02_0       3606764 148 +  4147112 I
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeRem4.Crem_Contig0   2107203 328 -  4500979 I

a score=-215.000000
s ce10.chrX              5322882 1 + 17718866 -A
s caeSp111.Scaffold527     55512 1 -    90967 -t
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3606912 2 +  4147112 AA
i caePb3.Scfld02_0      I 148 C 0
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I
e caeRem4.Crem_Contig0   2107203 328 -  4500979 I

a score=-7501.000000
s ce10.chrX              5322883 84 + 17718866 GTTTCTGACCTAAAACTAATAATATACTTTAAGTGTGCTCACCTTTTTACTTTCTTTGTACAATATAAC---------TGAAACTATGTGGCC-
s caeRem4.Crem_Contig0   2107531 77 -  4500979 GTTTCTGACCTGCTGCTACAAA------ACAGATGCGCTCACCTCTTTTATCTCTCTGTcacttgaaac---------tgaaatccGCTTCC--
i caeRem4.Crem_Contig0  I 328 C 0
s caeSp111.Scaffold527     55513 80 -    90967 --tctTCGCTTTTT------AA------ACAGGTGTGCTCACCTCGTTTCTCTCACAGTCAATTGTAATCCTTGAGTCTAGAGAATGTTTAGct
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3606914 33 +  4147112 --TCTTCA----------------------------gctca---------------aaacaaataaa-----------taaaaattggt-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460419 1037 +   823664 I
e cb4.chrX              10670236 981 + 21540570 I

a score=-977.000000
s ce10.chrX              5322967  86 + 17718866 AGTAACG-----------------GAAAATAAACTAATCGAGAATTGGTCACTCTGCAC-----------------CAGAAAAGTGATAAGTATGAAGTCTACTAAAA------------ATGAATTGAA----------GT
s cb4.chrX              10671217 110 + 21540570 AGTATCTGGTAATGAATTCcagttca--------------aaaaatggtcactcTTaa-agag---------------aaaaaccgcta--tttaaaggaattgaaaaggaagtaaaacaaaaaagtgaagcTCAGAAAGTT
i cb4.chrX              I 981 C 0
s caeRem4.Crem_Contig0   2107608 113 -  4500979 ---AACTAGAAAATCGCT-TAGctcaaaacaaataaat--aaaaatgatgactCTGAATAGAGTAGCCAGC-----TTAAAACATGATA--TATAAAGTATTTGGAAAGGaagt------aaaaactgaa----------tt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     55593  97 -    90967 ------------------------caaaacaaataaat--tcaaatggaCACTTTAAATAGAGTAGCCATCACCG-AAAACGAGTAGTA--tataaagttttttgagaggAAGT------AAAAGTTGAA----------TT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3606947  75 +  4147112 -------------------------------------------------cACTCCAACTAGAGTAGCcatcagtgaaaaaagagagata--tataaagttttttggaaggaaGT------AAAAGTTGAA----------TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   460419 1037 +   823664 I

a score=107754.000000
s ce10.chrX              5323053 368 + 17718866 ATGAACGAGAGAACGATGTTC------AAAGAGAAACTATACGTT----TTTAATGATTCGGACGGATGGCTATGAATGAACAT-----------A--AAAACTACTGAAACTGACCACTCCTACGTTTCAAGTTGCA-ACGACCC-----TTTTTTGACATTCACTTTCATACTTCGTATAGTATACTATTGAAATG---ATATA-GTTCCAAAAATGGAGAAA-------------GGATGAGT----------TTGATATTTAGATGAG-----------ATATAAAAA------CAACTCACTCGAAGAAGAAACTCCACTGGCGGCGAAGCGCAGCTTTACTTTCCGACTTCCTTCAGATTTGCTCATCTGTAAAAT--------------------------AT---------TTTATTGGTG--------------CGGGAAAACAAACAAGATACAAAAATGAGAAAT----AAAAAAGTAAAAA--A
s cb4.chrX              10671327 365 + 21540570 ATAACT---GGAACAACGTTC------AA--TGAAACTATACGTT----TTTAATGTTGCGGACGGATGACCATGAATGCAAAtaaaggaaacaaa--aaaactactgaAAGTGACCACTAC-------TATGTTGT--ATGACAT-----TTTGTGGTCAA------------TTCGTATAG-----TAATAAAAATTGGGTTAA-GTATCAAATATAGAATGT--------CTCGtttttttATGTGTTGGCAGTCTTGATGATGGTGAT-----------ATGAAACAACAACTACAACTCACTTGAGGATGAAACTTCGCTTGAAGCAAAGCGCAGCTTCTGTTTCCGACTACCGCCCGATTTGCTCATCTGTAAGAA--------------------------AT---------CTTGTTT------------------GACAAAACAACACTGGgtagataaaaaag-------aaagaaaaaagta---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2107721 369 -  4500979 atgAAT--AGGAACGACGTTC------AA--TGAAACTATACGTT----TTTGATGATTCGGACGGATGACCatgaattgaaat-----------a--aaaactactGAAAGTGACCACTACGATGTTTTATGTTGT--AGGTCATATtacttttttgacat------------ttcgtATAGTATACTAATCAAATT---GTTTA-GTCTTAAATATATAATGCATAGTGagctaatttttcttt----------catcgATGAAGATGAT-----------ATGAAACAACAGT--AAACTCACTTGAGGATGAAACTTCGCTTGAGGCAAAGCGTAGTTTTTGTTTCCGACTACCGCCAGATTTGCTCATCTGTAAG-A--------------------------AT---------CTTGTTTGta---------------gagaaaacaattttgaatgaaaaaaaaga-------aaagatataATCACA-
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     55690 346 -    90967 ATGAAT---GGAACGTCGTTC------AA--TGAAACTATACGTT----TTTTATGTTTCGGACGGATGACCatgaatgaaattgag--------aagaaaactattgaaaGTGACCACTAAGTTATCGTCTTT-----ATGAC-C-----TTT---GCCAT------------TTCAAATAGTATACTAATGAAATC---GTATAGTTTCCACATATAGTATGC-------------AGATGTGC----------CGATGATCATGATGAT-----------GTACAAAAAC-TG--CAACTTACTTGAAGATGAAACTCCACTGGACGCAAAGCGCAGCTTCTGTTTCCGACT------AGATTTGCTCATCTGTAAGAA--------------------------At---------ccgatttg-----------------aaaaaaatagaataaaaacgaaaatgaagcgttatattagagtcaaaaa---
i caeSp111.Scaffold527  C 0 I 602
s caePb3.Scfld02_0       3607022 365 +  4147112 ATGAAT--AGGAACGACGTTC------AA--TGAAACTATACGTT----TTTGATGATTCGGACCGATGACCAtgaataaaattatg--------a--aaaactacTAAAAGTGACCACTACTTTTTTGTATATTATACATGACAT-----TTT---GACAT------------TTCGTATAGTATACTAATAAAA-----------TTCTTAAATATAGAATGT-------------GGTTATAT----------cgctgatgatgatgagactgatgagaaataaaacaacaaa--caaCTCACTTGAAGATGAAACTCCGCTTGAAGCAAAGCGCAGCTTCTGTTTCCGACTACCGCCAGATTTGCTCATCTGTAAAAA--------------------------TTGTATTGTGGCGGgtgag-----------------gaaaaaattggagtggatagaaaataaggag-----aaagaaacaaaaa---
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   461456 380 +   823664 ATGAAA-AGGGAACAACGTtcgtaaaaaa--tagaaacataGTTTTCAATTCAATGATTCGGAAGAGtgatcatgaa---aaatgagttttc---A--GAAGCGAAATGAACTGACCGG--------------------ATGACAT-----T-------CAT------------TTCA-ATGG-----TAATGAAATC---GTATA-GTTGTTAGTATAAATTTC----------AGTGTCAGTTT----------CCAGCCACAAAATGAT-----------AAATGTATCCGTA--AAACTTACGCGATGACGAAACTTCGGTGGAGGCAAAGCGCAGCTTCACTGTTCGACTACCGCCAGGCTTGCTCATCTGTAAGAAGGATGTGcttggccaaaaaaaaattcat---------tatatTAATAGGAGTAGGAGCTAGGAAGCAAaaagaagagagagagagagaaagag-----aatgagagaaga----
i caeJap4.Scaffold18194 I 1037 C 0

a score=154.000000
s ce10.chrX              5323421 11 + 17718866 -ACCA-ACTAAAA
s cb4.chrX              10671692 11 + 21540570 -acaa-agaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2108091 11 -  4500979 -CCAA-AGTAGAC
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3607397 12 +  4147112 -acaacaataaaa
i caePb3.Scfld02_0      I 10 I 646
s caeJap4.Scaffold18194   461836 11 +   823664 ggcaa-ataaaa-
i caeJap4.Scaffold18194 C 0 I 1095
e caeSp111.Scaffold527     56036 602 -    90967 I

a score=-1737.000000
s ce10.chrX              5323432 8 + 17718866 AAATACCA
s cb4.chrX              10671703 7 + 21540570 g-acatca
i cb4.chrX              C 0 I 67
s caeRem4.Crem_Contig0   2108102 2 -  4500979 C-A-----
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3607409 646 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e caeSp111.Scaffold527     56036 602 -    90967 I

a score=168.000000
s ce10.chrX              5323440 4 + 17718866 TAGA
s caeRem4.Crem_Contig0   2108104 4 -  4500979 GAGA
i caeRem4.Crem_Contig0  C 0 I 675
e caePb3.Scfld02_0       3607409 646 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10671710 67 + 21540570 I
e caeSp111.Scaffold527     56036 602 -    90967 I

a score=0.000000
s ce10.chrX              5323444 658 + 17718866  
e caePb3.Scfld02_0       3607409 646 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10671710  67 + 21540570 I
e caeSp111.Scaffold527     56036 602 -    90967 I
e caeRem4.Crem_Contig0   2108108 675 -  4500979 I

a score=2932.000000
s ce10.chrX              5324102 279 + 17718866 ATTCAATGTGAAAGAAAAGCAAAACATAAATAAAAA--CAATGAA-----------GTAAAAGCTCAAATTCGTAAATATAACTTTTTTTCGAAAATACGATGAAAGCTCATTTT-----TGTTTCGAGTCG----CCGAACTACTTTCGGA---CAAAGCCGCATCTTGTAACCC---TCTTGCGAAAACAACATTTCAAAGTTTCAGAAGA--------TGTTCGCATTGAGA---TGCAAACAAAA------------TGTGAGAAGTAGCCGACGGAGTGCCTCTGTGGTGTGAATAATTTTAATGTGATAATG----AGTTTTTTGTTC
s cb4.chrX              10671777 332 + 21540570 ATTCAAAAGGCGAGAAAcggaaaacaatagaaaaaaggcAAAGGATGCGTCTagttgaaaaatctcaaataag-AATTGTATCGAATTGCAAAAAGAAGGATGAAAAGTCGTGTTGTGTTTCTTTCCAGCCTAACCCTTCACTTGTTTAGGGGTTCAAAACTA-AGGTTGGGACACATGCCTGACCAAAACAACTCTACAAACTgtcagaagaaagaaaaatgttcgCGAAgcgaatttacaaaaaaaagttttgagggATTGTGTTTTGTGAATAGAGATGTGCTTCTGGAGTGTGACTAATTCGAATGTGATCGtgtccttgtttttttttc
i cb4.chrX              I 67 I 1506
e caePb3.Scfld02_0       3607409 646 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e caeSp111.Scaffold527     56036 602 -    90967 I
e caeRem4.Crem_Contig0   2108108 675 -  4500979 I

a score=0.000000
s ce10.chrX              5324381 1201 + 17718866  
e caePb3.Scfld02_0       3607409  646 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10672109 1506 + 21540570 I
e caeSp111.Scaffold527     56036  602 -    90967 I
e caeRem4.Crem_Contig0   2108108  675 -  4500979 I

a score=10157.000000
s ce10.chrX              5325582 102 + 17718866 CAATTATGACCTAATTA----TAAGGAAAAGTA----AGAAGCAAAGTAACGAAAAGGTTGAA-GCCATCTGAAAGTATGCTTCTTGTGTAA-GTAACGTTTTCTGTGTTGA---------
s caeRem4.Crem_Contig0   2108783 104 -  4500979 CAATTATTGACTAATTATTCATGGCGG----------AGAAgccgaaaaaaga-------gaaagacaTCACAACATGTTTTTCATGTGTGATGCTGTTTCTGCAATATGGATAAAGTATA
i caeRem4.Crem_Contig0  I 675 C 0
s caeSp111.Scaffold527     56638 106 -    90967 CAATTATTGACTAATTATT--TGCAGAAGagtgttgaaaaaaaagaaaaaagaagaa---gaaggacatCACAACATG-TTTTCATCTGTGATGTTGTTTCTTCAATGTGAG---------
i caeSp111.Scaffold527  I 602 C 0
s caePb3.Scfld02_0       3608055 102 +  4147112 CAATTATTGACTAATTATTCATGGCGAGTAGtgtcg-aaaagaagaaaaaagaagaaagcgaAGGGCATCACAACATG-TTTTTTCATGTG--------TTTCTACTGTGGG---------
i caePb3.Scfld02_0      I 646 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10672109 1506 + 21540570 I

a score=127229.000000
s ce10.chrX              5325684 493 + 17718866  
s cb4.chrX              10673615 528 + 21540570  
i cb4.chrX              I 1506 I 413
s caeRem4.Crem_Contig0   2108887 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     56744 517 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3608157 519 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I

a score=932.000000
s ce10.chrX              5326177 16 + 17718866 CTGAGTGATAAACAAG----------
s caeRem4.Crem_Contig0   2109374 18 -  4500979 --------CAGACAGATGTCtcccaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     57261 16 -    90967 CAGAGTGGCAGACAGG----------
i caeSp111.Scaffold527  C 0 I 243
s caePb3.Scfld02_0       3608676 16 +  4147112 TATGGTGACAGACAGG----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I

a score=575.000000
s ce10.chrX              5326193 3 + 17718866 GAT
s caeRem4.Crem_Contig0   2109392 3 -  4500979 aat
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3608692 3 +  4147112 AAT
i caePb3.Scfld02_0      C 0 I 616
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I
e caeSp111.Scaffold527     57277 243 -    90967 I

a score=1229.000000
s ce10.chrX              5326196 89 + 17718866 TTTCTTTAATAATGAAATTCGGCGGAAGCGATTTCATTTCGGATTTTTGAATGTCTTGACACTAATTTGAAATAATTTgaaaaaaaaag
s caeRem4.Crem_Contig0   2109395 85 -  4500979 ttttataattatagCAATCCGGTGAAAAAGATTGTTATCCGGTTCGTAGACTTGCTGAACCAAAAC----AATAACTCAAAACAAGAAG
i caeRem4.Crem_Contig0  C 0 I 409
e caePb3.Scfld02_0       3608695 616 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I
e caeSp111.Scaffold527     57277 243 -    90967 I

a score=0.000000
s ce10.chrX              5326285 961 + 17718866  
e caePb3.Scfld02_0       3608695 616 +  4147112 I
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I
e caeSp111.Scaffold527     57277 243 -    90967 I
e caeRem4.Crem_Contig0   2109480 409 -  4500979 I

a score=100.000000
s ce10.chrX              5327246 1 + 17718866 C
s caePb3.Scfld02_0       3609311 1 +  4147112 c
i caePb3.Scfld02_0      I 616 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I
e caeSp111.Scaffold527     57277 243 -    90967 I
e caeRem4.Crem_Contig0   2109480 409 -  4500979 I

a score=-564.000000
s ce10.chrX              5327247 25 + 17718866 --TTTCCTAACG--TTAAAATATTCCTTT--
s caeRem4.Crem_Contig0   2109889 27 -  4500979 --TTTTCAAACGACTCTAAATGTTATTCT--
i caeRem4.Crem_Contig0  I 409 C 0
s caePb3.Scfld02_0       3609312 25 +  4147112 ttttttcaa-----tctcaa-aTAATTCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I
e caeSp111.Scaffold527     57277 243 -    90967 I

a score=883.000000
s ce10.chrX              5327272 6 + 17718866 -AATGCA
s caeRem4.Crem_Contig0   2109916 6 -  4500979 AAATGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     57520 6 -    90967 -AATGTT
i caeSp111.Scaffold527  I 243 C 0
s caePb3.Scfld02_0       3609337 6 +  4147112 -AATGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I
e cb4.chrX              10674143 413 + 21540570 I

a score=41950.000000
s ce10.chrX              5327278 221 + 17718866 TTTCGGAT--TTGTTTGAAGTCAACGAACATTAAATGTAAAAAG--CGGTCTGCTTGCCTATCCCTTCT-------ATTTTTTTCTCATAATCG--CCCACCACCAAG---TACTAGAGCAGATGTC----------TCATTGAGATTTGAGATGAAAG---AAAAACCAACTACATA--AC-----TATCACAACATATTCT--GTAAAGATCAAGCATCAGGAA---CTGA---------ATGATGGCCATGTGTAGCCATCAATTGTG
s cb4.chrX              10674556 220 + 21540570 TTTCGGTGGTCCGTTTGAAGTCCACAAACTATGAACAGAAAAAAGCACGTCTG--GTCCTATCTCTCTCAGAAAAATGTGTTCTCTCATAATCG--CCCACCGCCAAG---TACTTGAGCAGATGTCAGTATTTTCAACACTAAAAGTAA------------CGAgaacagattttttt-ccaacagaatttctat---------gaaaaaatcaagaa--gctAT---GTAA---------A---ATGCCAAGAGT-----TCTTTTCGT
i cb4.chrX              I 413 C 0
s caeRem4.Crem_Contig0   2109922 193 -  4500979 TATCGGTA--TCGTTTGATGTCCAAGAACTCTGAACAAAAATAA----GTCTA--GCCGtatctcttat-----------ttttctcataatcG--CCCACCACCAAG---TACTACAGCAGATGTC----------ACACTGagatcca------------acaaaaaaaatccacTT-GC-----AATCACAAC---------TAGAAAATCAAGCATCACAAA---CTGA---------AGGGAGGCCAAGAGT-----TCTTTTCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     57526 223 -    90967 TTTCGGGT--TCGTTTGAAGTTCGAGAGTTgtgaacagaaaaac--ttgTCTG--GACCtatctctcct----------tttctcttctaatcGCCCCCACCACAAAATACTACTTGAGCAGATGTC----------ACACCCAtcgagaaagagagagttGAAAAACcgattctattt-tt-----gatcaGAACA--------AGTAGAATCACGCATCAAAAA---CGAAGAGTATACAGAGGGGGTGAAGAGT-----TCTTTTTGG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3609343 221 +  4147112 TTTCGGGT--CCGTTTGAAGTCCACGAACTATGAACACAAAAG---TTGTCTG--GGCCtatctctcgt----------tttttctcataatcG--CCCACCACCAAGTACTACTAGAGCAGATGTC----------ACTCTGAgatttaaacaaa------aaaaatcaaatctacTTGCC-----TATCACAACATTTTCTCTATGAAAATCAAGCATCACAAAATTCAAGTAGT-----GAGGGAGCCAAGAGT-----TCTTTTCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   461847 1095 +   823664 I

a score=36769.000000
s ce10.chrX              5327499 89 + 17718866 TGT--GTCACTTCATTTTTCCTGCCTGC---CTGTTCTTG---CCTCATCACTATGCAAATT---GCT-CAAAGTATACAACTTATGCACATTCCGAAACG
s cb4.chrX              10674776 72 + 21540570 GGT--------------CCTGTCCTTAG---TAG---TAG---GTTCATCACTATGCAAATTGGCGCC-TGCTGTGTATACAATGT-----TTTTGGCGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2110115 91 -  4500979 TGTCTCCTACTTTTGTGCCTGTCCTTAC---TAGTTTTCG---GTTCATCACTATGCAAATT---GCT-TGCTGTATACAACTTATGCACATTCTGAAGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     57749 86 -    90967 TGA--CCCTCTGCCG----TGTCCTTAC---TAGTTTTCG---ACTCATCACTATGCAAATT---GCCAAGTCGTATACAACTTATGCACATTCCGAAGCG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3609564 93 +  4147112 AGG--TCCCTTCCTGTGCCTGTCCTTAC---TAGTTTTCGACTACTCATCACTATGCAAATT---GCCATGTCGTATACAACTTATGCACATTCCGAAACG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   462942 88 +   823664 -----TGTACCCTTTAATCTGTCTTTTCCCTTAGTTTTCC---ACTCATCACTATGCAAATT---GA--TGTTGCATACAACTTATGCACATTTTGAAacg
i caeJap4.Scaffold18194 I 1095 I 523

a score=40533.000000
s ce10.chrX              5327588 204 + 17718866 -CTTCGGCAAAA--TTTTGAGA-TTTTCGAATACGTGAACAAAAAGGTGAGAGAGTATGGCAA-GAA------AATAAAGTTGCTCGTTAGAATTTTG-------------AAACGTTCACAAAACTGGCTGAGAGAAAAACGGGGGATTAGAACATTGC--------CGAAATGGGAAATAGAAAAAAAAAGAATCAAGAGCAAATGATAA-TTTTGAGTGACTGATGAGATGTCA
s cb4.chrX              10674848 205 + 21540570 ACACCGCCACATACTTCCGGGA-TTTTTGAATGCGCGAACAAGTAGATAAGAAAATATTGTGA-CAGCAGA--AGAAAAGTAGTTCTGGGCTCTTTGG---------GTTGGTGCGTTCACTGAC------------------TAGGATTATCATTTTGGACCTAAGAAGGAGGAGAGGGTtggaaaaaacgaagaaaaaggagaaagataA-TTTTGAGTTACTGATGAAGTGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2110206 180 -  4500979 CCTTTGCCACAT--TTTTAAGG-ATTTCGAATGCGGGAACAAATAGATAAGAAActactgaaa-aag------agaaacgcgACCAGGAAAAGTTTTT---------GGTGGGACGTTCACGAAA------------------GAGGATTATTATTTTGG---------------GAGGgtaaaaaaagacgaaaaaaga----aaagataa-ttTCGAATGACGGATGAAGTGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     57835 182 -    90967 -CTTTGCCACGAtt---caagatttttggaatgcGCGAACAAATGGATAAGAAACTACTGAGA-AAATAAAGTGGCGAAAGGGTTCAGAGTATCGTTT---------TCCTCGCCGTTCAAGGAA------------------AAGGATTATTTT----G-------------TGGGTGgttagaaa----gaagaaaaacggaaaa-ataa-ttttgagtGACCGATTGAGTGTCA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3609657 204 +  4147112 -CTTTGCCACACTTTTCCGAGA-TTTCGGAATGCGTGAACAAATGGATAAGAAACTACTGAGAGAAATAAAGTGGCCAAAGGGTTCATAgtattttttgctattttctctCCAACGTTCACGGAA------------------AAGGATTATTATTTCGG-------------TGGGTGggtcgaaaaaaggaaaaaaaacggaaaagataatttttgaatgaccGATTGGGTGTCA
i caePb3.Scfld02_0      C 0 I 184
e caeJap4.Scaffold18194   463030 523 +   823664 I

a score=-1519.000000
s ce10.chrX              5327792 5 + 17718866 CACAT--
s cb4.chrX              10675053 5 + 21540570 --GAGAT
i cb4.chrX              C 0 I 398
s caeRem4.Crem_Contig0   2110386 5 -  4500979 --GATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     58017 5 -    90967 CAGAT--
i caeSp111.Scaffold527  C 0 I 71
e caePb3.Scfld02_0       3609861 184 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I

a score=335.000000
s ce10.chrX              5327797 22 + 17718866 AGTATTCCAAAAGGGTAGGTAA
s caeRem4.Crem_Contig0   2110391 22 -  4500979 TTCACTCGAGGGAGGTAGAAAA
i caeRem4.Crem_Contig0  C 0 I 170
e caePb3.Scfld02_0       3609861 184 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675058 398 + 21540570 I
e caeSp111.Scaffold527     58022 71 -    90967 I

a score=0.000000
s ce10.chrX              5327819 738 + 17718866  
e caePb3.Scfld02_0       3609861 184 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675058 398 + 21540570 I
e caeSp111.Scaffold527     58022  71 -    90967 I
e caeRem4.Crem_Contig0   2110413 170 -  4500979 I

a score=874.000000
s ce10.chrX              5328557 97 + 17718866 TACTACCAAAAAACTTTT-----CAAGGAATATTTCATT-CTAAAAAAAGATTTTTTTCTGAAATGATTCTAGTT----AATTACTGATTTCCCACACAAGCCAAGA
s caeSp111.Scaffold527     58093 99 -    90967 tactacaaaaGTAATTATATGAATAAAGAATATCCCAGGgccaaagaaaaattatatttcat-----tttcagttgcaTAAGAACTTGGTTCTCACAC---TCAAAA
i caeSp111.Scaffold527  I 71 C 0
e caePb3.Scfld02_0       3609861 184 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675058 398 + 21540570 I
e caeRem4.Crem_Contig0   2110413 170 -  4500979 I

a score=569.000000
s ce10.chrX              5328654 25 + 17718866 -TCAACAATATTACACAAGTCACTCG
s caeRem4.Crem_Contig0   2110583 22 -  4500979 -TCTAAAATTTCTCACGGTTCac---
i caeRem4.Crem_Contig0  I 170 C 0
s caeSp111.Scaffold527     58192 26 -    90967 CTATACATTTTCGCACACGGCAccag
i caeSp111.Scaffold527  C 0 I 2
e caePb3.Scfld02_0       3609861 184 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675058 398 + 21540570 I

a score=1717.000000
s ce10.chrX              5328679 46 + 17718866 AAAAACAATTGTGGGAACAA---------AGGATTTTCTGTTTGTTTTTAACCGG
s caeRem4.Crem_Contig0   2110605 41 -  4500979 -aaagaattctgaaaaacaaataaacgcTGGCGTTTTTTCGC-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     58220 36 -    90967 aaaaccaattgtGAAAACAA---------ggttctttttgtttgt----------
i caeSp111.Scaffold527  I 2 C 0
s caePb3.Scfld02_0       3610045 42 +  4147112 aaaaccaattgtaaaaacaa---------ggttttttttcttttttcc--atc--
i caePb3.Scfld02_0      I 184 C 0
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675058 398 + 21540570 I

a score=31682.000000
s ce10.chrX              5328725 75 + 17718866 CATGATTGCAGTTCT----CAAGTATGCTCAAGATGTCATTATGTCAAATGTCAGTGTCCATC-----ATCAGTGACCACATTT-
s cb4.chrX              10675456 73 + 21540570 CATTATTGCTGTTCTCAAGCAAGCATTTTCAAGATGTCATCGTGTCAC------ATATCCATC-----ATTTTTTACCGCATCT-
i cb4.chrX              I 398 I 64
s caeRem4.Crem_Contig0   2110646 75 -  4500979 CATTATTGCGGTTCT----CAAGCATGTTCAAGATGTCATCATGTCACATCTCAATGTCTATC-----ATTGTTGACCACattc-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     58256 75 -    90967 cATGATTGCGGTTCT----TGAGTATTTTCAAGATGTCATCATGtcaaatctcaaaatctCTC-----AACACTAACcac-tttt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3610087 79 +  4147112 catGATTGCGG--CT----CAAGTATTTTCAAGATGTCATCATGTCACATTTCAGAGCTCATCATTTGACCATTGACCACAACTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   463030 523 +   823664 I

a score=1567.000000
s ce10.chrX              5328800 6 + 17718866 TTCATT
s caeRem4.Crem_Contig0   2110721 6 -  4500979 tttctt
i caeRem4.Crem_Contig0  C 0 I 50
s caeSp111.Scaffold527     58331 6 -    90967 tgtatt
i caeSp111.Scaffold527  C 0 I 47
s caePb3.Scfld02_0       3610166 6 +  4147112 TTCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675529 64 + 21540570 I

a score=273.000000
s ce10.chrX              5328806 3 + 17718866 TTT
s caePb3.Scfld02_0       3610172 3 +  4147112 TTT
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675529 64 + 21540570 I
e caeSp111.Scaffold527     58337 47 -    90967 I
e caeRem4.Crem_Contig0   2110727 50 -  4500979 I

a score=0.000000
s ce10.chrX              5328809 501 + 17718866 CTGTTTTTTATTGGAGGTGCAGCATCAAACTTTGGGTTGTTACTATATGGTTCAATTCGGTCTAAGACTACAGAATATTATACAGGCACGTTCTGACAAGCCCCCGAAATAGTGATGACCTTAAACTTTTGCTTCAAAAAATCTACTTTCAGATAAACTCTCAAATTTTGTCAATGTCGCAACGGCCTGAACGATAATTTTATTTGTATTCAGGACCTGTGTTAGTCCGTTTACTAGGGAATACATGACCTATTGGGTGGAGTTTCAGAACAAATTTAGTGTCAGTGGACAGCTGATTTTATGTACTTCTCAAACATAAAAGACTGTTTTTGCCGCTGATATCTAGAATTTTTTAGAAATTTGCATCCAAAGTTTAATGCGGATTTCAGTTAATTTTCTACACGAATCCTATGGATAAGAGTTTTCAGTTAGGCAAAAAATCACAACCTCAACTCCCTCTTTCAAAATAAATATTTAGCTTTTGATTTTGTTACTTGATAA
e caePb3.Scfld02_0       3610175  45 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675529  64 + 21540570 I
e caeSp111.Scaffold527     58337  47 -    90967 I
e caeRem4.Crem_Contig0   2110727  50 -  4500979 I

a score=91.000000
s ce10.chrX              5329310 1 + 17718866 T
s caeSp111.Scaffold527     58384 1 -    90967 T
i caeSp111.Scaffold527  I 47 C 0
e caePb3.Scfld02_0       3610175 45 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675529 64 + 21540570 I
e caeRem4.Crem_Contig0   2110727 50 -  4500979 I

a score=1855.000000
s ce10.chrX              5329311 22 + 17718866 TCCACTAAACATTCCACCTGGT
s caeRem4.Crem_Contig0   2110777 22 -  4500979 TCTTCCAATCTTTCTGCCAAAA
i caeRem4.Crem_Contig0  I 50 C 0
s caeSp111.Scaffold527     58385 22 -    90967 TCTAAGAAACTTTCTGCCTGAA
i caeSp111.Scaffold527  C 0 I 1
e caePb3.Scfld02_0       3610175 45 +  4147112 I
e caeJap4.Scaffold18194   463030 523 +   823664 I
e cb4.chrX              10675529 64 + 21540570 I

a score=58261.000000
s ce10.chrX              5329333 133 + 17718866 GACTATGCAAACGATGACAAAAGTCCTACCGACTCAA-------TACTCTGTACATTTCTTTTCCAATCTGTCATGATTTTACCGCTTATCAC-TGTGTTAACAGACGAAATGAAATGATTGATAAAGACTC-TTTTCTGCC
s cb4.chrX              10675593 133 + 21540570 GACTATTTGAATGATGACAAACCT----CCGACTCAATTCCCATTGCACTGCACATTT-TTCTTCACTCTGTCATGATTTTTTGTCTTATCACTCCCGTTACATGTACCGACAAAA----TGATAAAGACTCATTTTCTGCC
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig0   2110799 133 -  4500979 GACTATGCAAATGATGACAAAATTTCGACCGACTCAA--CTCAACGCACTGcacattt-ttcttcgatctgtcatgattttttgtcttATCAC-CATGTTAACAGGACAGACGAAT----TGATAAAGAGTC-TTTTCTGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     58408 119 -    90967 GACTATGCAAATGATGACAAA-------CCTATTCAA-------CACTCcg--cattt-ttcttcattctgccatgattttttgtcttaTCAT-CATGTTAACAGGAGAGACGAAT----TGATAAAGAGTC-TTTTAAACC
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3610220 120 +  4147112 GACTATGCAAACGATGACAAA-------CCGACTCAA-------CGCACCgcacattt-ttcttcaatctgtCATGACTTTTTGTCTTATCAA-AGTGTTAACAGGACAGACGAATTGAATGATAAAGACTC-TTTC-----
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold18194   463030 523 +   823664 I

a score=279778.000000
s ce10.chrX              5329466 517 + 17718866  
s cb4.chrX              10675726 516 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2110932 522 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     58527 518 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3610340 553 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   463553 520 +   823664  
i caeJap4.Scaffold18194 I 523 I 30

a score=-2915.000000
s ce10.chrX              5329983 3 + 17718866 GAA-
s cb4.chrX              10676242 4 + 21540570 GCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2111454 4 -  4500979 TTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     59045 3 -    90967 AAA-
i caeSp111.Scaffold527  C 0 I 28
s caePb3.Scfld02_0       3610893 3 +  4147112 AGA-
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold18194   464073 30 +   823664 I

a score=-555.000000
s ce10.chrX              5329986 36 + 17718866 A-----TGTTGTAAAAATTAAGATCATAATAACTTTATAAT
s cb4.chrX              10676246 28 + 21540570 A-----TTTTACCA--------ATCACAACAGTTTGAAAat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2111458 39 -  4500979 ACGATTTTTTATTACAA--AGTATTTCATCAAAGTTATAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3610896 29 +  4147112 I
e caeJap4.Scaffold18194   464073 30 +   823664 I
e caeSp111.Scaffold527     59048 28 -    90967 I

a score=91.000000
s ce10.chrX              5330022 1 + 17718866 A
s cb4.chrX              10676274 1 + 21540570 a
i cb4.chrX              C 0 I 52
e caePb3.Scfld02_0       3610896 29 +  4147112 I
e caeJap4.Scaffold18194   464073 30 +   823664 I
e caeSp111.Scaffold527     59048 28 -    90967 I
e caeRem4.Crem_Contig0   2111497 0 -  4500979 C

a score=0.000000
s ce10.chrX              5330023 450 + 17718866 TTTCATGAACGGAGAAAAATACATACGTTTTCAAATCTATAGAAATAGTGCTACGAACTGAGTTTGTATTTAAAGAAGGAACTCTTGAATGGAAAGTCCAACAAAACCGACATCTGAAATGTTGCCTGAAATCTTGATTTTAATATTGAACCAGTTCATTCCGAGTTGTATTTTTTATTGATTCAGCTTACGTTTTCAGTTTCAAAGCCTCCAATAATCAATACATTTGAGTGACGAGCGGCAAAGAATGCACTTAAGTAAACGAACAAAAAAAGGAATAAATCATTTTGTTATGAAAATAAAGTGACATGAATTTAAAAAAAAACCAGATTGATACAGTAAAATTGGCAAAGTTGTAGTTTTCCGCTGGATTTTTAAAAAAAATATTCAAGAAGAATCATTATTAAATTTGATTTTGGTAGCCATTTTGAGTACACGAAAATAAAAAAT
e caePb3.Scfld02_0       3610896  29 +  4147112 I
e caeJap4.Scaffold18194   464073  30 +   823664 I
e cb4.chrX              10676275  52 + 21540570 I
e caeSp111.Scaffold527     59048  28 -    90967 I
e caeRem4.Crem_Contig0   2111497   0 -  4500979 C

a score=291.000000
s ce10.chrX              5330473 3 + 17718866 CCA
s cb4.chrX              10676327 3 + 21540570 CCA
i cb4.chrX              I 52 C 0
e caePb3.Scfld02_0       3610896 29 +  4147112 I
e caeJap4.Scaffold18194   464073 30 +   823664 I
e caeSp111.Scaffold527     59048 28 -    90967 I
e caeRem4.Crem_Contig0   2111497 0 -  4500979 C

a score=546.000000
s ce10.chrX              5330476 1 + 17718866 A
s cb4.chrX              10676330 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2111497 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3610925 1 +  4147112 A
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold18194   464073 30 +   823664 I
e caeSp111.Scaffold527     59048 28 -    90967 I

a score=587178.000000
s ce10.chrX              5330477 1043 + 17718866  
s cb4.chrX              10676331 1026 + 21540570  
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   2111498 1044 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 47
s caeSp111.Scaffold527     59076 1054 -    90967  
i caeSp111.Scaffold527  I 28 C 0
s caePb3.Scfld02_0       3610926 1040 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   464103 1071 +   823664  
i caeJap4.Scaffold18194 I 30 C 0

a score=0.000000
s ce10.chrX              5331520 29 + 17718866 CATTAATCAAAAGCTAAATGCGGCTTTAC
e caePb3.Scfld02_0       3611966  0 +  4147112 C
e caeJap4.Scaffold18194   465174  0 +   823664 C
e cb4.chrX              10677357 58 + 21540570 I
e caeSp111.Scaffold527     60130  0 -    90967 C
e caeRem4.Crem_Contig0   2112542 47 -  4500979 I

a score=0.000000
s ce10.chrX              5331549 17 + 17718866 ATTAGCAAAAATCAAAC
e caePb3.Scfld02_0       3611966  0 +  4147112 C
e caeJap4.Scaffold18194   465174  0 +   823664 C
e cb4.chrX              10677357 58 + 21540570 I
e caeSp111.Scaffold527     60130  0 -    90967 C
e caeRem4.Crem_Contig0   2112542 47 -  4500979 I

a score=-8270.000000
s ce10.chrX              5331566 59 + 17718866 ACTTATATTATAGACTTAAACATAAAAACCAAAAATTTGAAAAATTAC-----------TCAGTATAACA
s cb4.chrX              10677415 50 + 21540570 atttctatgagagat--------------------attaaaacaATAGAAGTGTTGGTGACAGTGTGACA
i cb4.chrX              I 58 C 0
s caePb3.Scfld02_0       3611966 18 +  4147112 -----------------------------------tttgaaaaaat-------------tcaatgt----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   465174  7 +   823664 ---TATACTg------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     60130  0 -    90967 C
e caeRem4.Crem_Contig0   2112542 47 -  4500979 I

a score=-10236.000000
s ce10.chrX              5331625 41 + 17718866 AAAGGGAACGTTTTCTCAGTTTAATTGAGATTTTTATTTTA
s cb4.chrX              10677465 32 + 21540570 ------TACACTTTAGcagttgagaaa---ttttcggTTTG
i cb4.chrX              C 0 I 105
s caeSp111.Scaffold527     60130 21 -    90967 -----------------AAAAGAATTG---TACTCCGTGTC
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3611984  8 +  4147112 ---------------------------------tctGTGTA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   465181 18 +   823664 ---------------------caattcacgttttttttt--
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2112542 47 -  4500979 I

a score=-476.000000
s ce10.chrX              5331666 45 + 17718866 TCAAAAACGTACCAAGATGCAGGCTGAAATAGCTGAAACTAATAA
s caeJap4.Scaffold18194   465199 10 +   823664 -----------------------------------aaattaaaaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3611992  1 +  4147112 I
e cb4.chrX              10677497 105 + 21540570 I
e caeSp111.Scaffold527     60151  1 -    90967 I
e caeRem4.Crem_Contig0   2112542 47 -  4500979 I

a score=-25258.000000
s ce10.chrX              5331711 153 + 17718866 GCTTGTGTAAACTCACTGCCTACTATAAGTCACCTATATAAAATTTAAGGAAAACCGTAAATTGACGAAATACGTCAAAACTTATTTGCCGCCCTAATATATTTTATACTCATAACAGTGAAACACGATAACATGCTCAACGAAATTCGGTTA
s caeRem4.Crem_Contig0   2112589  32 -  4500979 GTTTGTTTCAATTC-------------------------------------------------------------------------------------ATATATTTACTCG-------------------------------GTTTC-----
i caeRem4.Crem_Contig0  I 47 C 0
s caeSp111.Scaffold527     60152  22 -    90967 -ATTGTCTCA-----------------------------------------------------------------------------------------TTGTTTATACTTG-----------------------------------------
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3611993  13 +  4147112 --TTGCCT----------------------------------------------------------------------------------------------TTTTCAC--------------------------------------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   465209   9 +   823664 ------------------------------------------------------------------------------------------------tcctAATTT------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10677497 105 + 21540570 I

a score=191028.000000
s ce10.chrX              5331864 230 + 17718866 TAGATACTTTATCGACATGTGCACTGACATGTTTGGAGCCGATATTGGTATCAAGTATGTTCGCGACAATAACAAACAGACTTTGTACAAATACAAGGGTGCTGACAACTATCAAGCTACCAATGTCGTATTACCCAATGGAGCATTCGACCCATGGCATGTTCTAGGAACATACAACAATGACACCGCCAATCACATGACCCCACTTCTTATTCAAGGTAATGCTTTGG
s cb4.chrX              10677602 224 + 21540570 tagataCTTCATCGACATGTGCACAGATATGTTTGGACCCGATGTCGGTATCAAGTTCATTCGCGACAATAACAAGCAAACTCTCTACAAGTATGGAGGTGCTGACAACTACCAAGCAACTAACGTCGTCCTTCCAAACGGAGCTTTCGATCCATGGCACGTACTTGGAACGTATAACAACAACACCGCTAATCATATGACCCCACTTCTCATTCAAGG------TATAT
i cb4.chrX              I 105 I 16
s caeRem4.Crem_Contig0   2112621 223 -  4500979 CAGATATTACATTGACATGTGCACGGCTATGTTTGGAGCCGATGTCGGTATCAAGTTCATTCGCGACAACAACAAACAGACTTTGTACAAATACGGAGGAGCTGACAACTACCAAGCGACTAATGTTGTCCTTCCAAACGGAGCATTCGATCCATGGCATGTTCTCGGAACATACAACAACAACACCGCTAACCACATGACACCACTTCTCATTCAAGG------TAT-T
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold527     60174 224 -    90967 AAGGTACTTTATTGACATGTGTACGGATATGTTCGGACCGGAAATCGATATCAAGTACATTCGGGATCACAACAAGAACACTCTGTACAAATACGGAGGCGCCGACAATTACAAAGCGACTAATGTAGTTCTTCCGAATGGCGCTTTTGATCCATGGCATGTGTTAGGAACCTATAACAGTGATACCAACAACCACATGACACCACTTTTAATTCAAgg------tttgg
i caeSp111.Scaffold527  C 0 I 6
s caePb3.Scfld02_0       3612006 223 +  4147112 -AGATACTTCATTGACATGTGCACGGAAATGTTCGGACCTGATGTGGGTATCAAGTACATTCGCGATAACAACAAGCAGACTTTGTACAATTATGGAGGAGCTGACAATTATCAAGCGACTAATGTTGTCCTTCCAAATGGTGCTTTTGATCCGTGGCACGTTCTTGGAACATACAACAACAACACTGCCAATCATATGACACCACTTCTGATTCAAGG------TTTGA
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold18194   465218 230 +   823664 CAGATACTTTATTGACATGTGCACAGAAATGTTCGGACCAGAAATTGGTATCCAATACATTCGTGATAATAACATAAACACGAATGAGAAATACGGTGGAAGTTCCAATTACAAAGCAACAAATGTGGTCCTCCCTAACGGATCTTATGATCCTTGGCACGTACTAGGAACTAATGTCAGTGATCCAATCAATCATGTAACACCGCTTCTCATTCAAGGTGAGTTTTTGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-7249.000000
s ce10.chrX              5332094 24 + 17718866 --------CACTTTTTTCGTTTGAAC------TCAT--AG
s cb4.chrX              10677842 22 + 21540570 --------CAATTTTGTCATCCACAA------TTTT----
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2112850 28 -  4500979 --------CTAGTTTTTCCTCaacaaactttttatt----
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold527     60404 24 -    90967 --------taattttctgattctcat------TGTTCA--
i caeSp111.Scaffold527  I 6 I 1
s caeJap4.Scaffold18194   465448 28 +   823664 TTTGtagatttatttttaaacataAG------TG------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3612229 33 +  4147112 I

a score=88843.000000
s ce10.chrX              5332118 110 + 17718866 TTTCAGGAGCTGCACACTGCTCGGATATGTACCCAACATATCCTGGAGAGCCGACTGATTTGGCTAAAAACCGAGCAATCATCCACAACGAACTCAAATATTTCCTAGGG
s cb4.chrX              10677864 110 + 21540570 TTACAGGAGCTGCTCACTGTTCCGACATGTACCCAACCTATGCTGGAGAGCCTGCTGATCTTCAAAGAAATCGAGACATCATTCACAAAGAGTTGAAATATTTCCTTGgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2112878 110 -  4500979 tttcaggagCTGCCCACTGTTCCGACATGTACCCAACATATGCAGGAGAACCAGCTGATCTTGCAAAGAACAGAGCCATCATTCACGATGAGCTGAAATACTTCCTAGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     60429 110 -    90967 TTCAAGGAGCTGCTCACTGTTCCGACATGTATCCAACATATGCTGGAGAGCCCACTGATCTTGCGAAAAACCGTGCAATCATCCACAGTGAACTAAAATATTTCCTGGGG
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3612262 110 +  4147112 TTTCAGGAGCTGCCCATTGCTCTGATATGTACCCAACATATGCCAATGAGCCAACGGATCTTGCGAAAAACAGGCAAATCATTCACGACGAAATCAAATACTTCTTAGGC
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold18194   465476 110 +   823664 TTATAGGTGCTGCTCACTGTTCTGACATGTATCCAGCCTATGATGGTGAACCAGCGGATTTGGCACACAACAGGGATAGGATTTTTAAAGAATTGCAATATTTCTTGGGG
i caeJap4.Scaffold18194 C 0 I 5513

a score=-535.000000
s ce10.chrX              5332228 7 + 17718866 ATTTCTT
s cb4.chrX              10677974 7 + 21540570 ctatgat
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2112988 7 -  4500979 CTCTCCT
i caeRem4.Crem_Contig0  C 0 I 1018
s caeSp111.Scaffold527     60539 7 -    90967 CTCTAAT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3612372 5 +  4147112 CTCT--C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465586 5513 +   823664 I

a score=-3636.000000
s ce10.chrX              5332235 9 + 17718866 AACTTTTCT--------
s cb4.chrX              10677986 9 + 21540570 -----ttct---tcttt
i cb4.chrX              I 5 I 14389
s caeSp111.Scaffold527     60546 6 -    90967 ----AAtct---t----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3612377 9 +  4147112 ----TACCTAAAT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465586 5513 +   823664 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=1838.000000
s ce10.chrX              5332244 38 + 17718866 AAACCCGTTTTGATTAACATTTTTCAAACCAATAAACT
s caeSp111.Scaffold527     60552 36 -    90967 tgatttatttt--tcgatttgttaTGAATCAATCAACT
i caeSp111.Scaffold527  C 0 I 1107
s caePb3.Scfld02_0       3612386 32 +  4147112 TGCactacttt------cttttttcaaaacaataaact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   465586 5513 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=77.000000
s ce10.chrX              5332282 14 + 17718866 GATGTGAATAAAGC
s caePb3.Scfld02_0       3612418 14 +  4147112 aTTCCACATATAGC
i caePb3.Scfld02_0      C 0 I 3354
e caeJap4.Scaffold18194   465586 5513 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     60588 1107 -    90967 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=0.000000
s ce10.chrX              5332296 771 + 17718866  
e caePb3.Scfld02_0       3612432 3354 +  4147112 I
e caeJap4.Scaffold18194   465586 5513 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     60588 1107 -    90967 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=35.000000
s ce10.chrX              5333067 8 + 17718866 AAGAGTTA
s caeSp111.Scaffold527     61695 8 -    90967 AGGTATCG
i caeSp111.Scaffold527  I 1107 C 0
e caePb3.Scfld02_0       3612432 3354 +  4147112 I
e caeJap4.Scaffold18194   465586 5513 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=6863.000000
s ce10.chrX              5333075 60 + 17718866 ATGCCAGCAATTCCTTTAATATTATATTTTTCAATTTCCGTTGCTTTGATTCTTCTGAAA
s caeSp111.Scaffold527     61703 60 -    90967 ATTCCGGCTATTCCTCTCACACGATACTTCTTAACGTCAATAGCTCTTATTCTCCTGTAA
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   471099 60 +   823664 ATTCCGGCGATCCCCTTCACATGATGCTTTTCCAGCTCTGTTGAGAGTATTCTTCTGCAA
i caeJap4.Scaffold18194 I 5513 I 154
e caePb3.Scfld02_0       3612432 3354 +  4147112 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=1275.000000
s ce10.chrX              5333135 150 + 17718866 AT---TGCGATTTGAAATAAGGTAATCTATTAAAAATTACTTACAATATTTTTCTCCTTGTGCACCTAACTTCATTCTCAACTTGTTCTTGCACACCGTCTTTAATATTAATAAGCATTGCTGTTCCGCATATTCGCATCTGAAAGGAAGCTA
s caeSp111.Scaffold527     61763 147 -    90967 ATAAATAAGAATTGATATC---CAATCTATTCAGTTTTACGGACTTTATCCGTCTTC-TATGCACTTCAC--CATCAGTTATTCGCTCCTGAATAAGatcttttaaatttattgTCATATTGTGTCCACAGAtgaataactgaaaaataatta
i caeSp111.Scaffold527  C 0 I 19
e caePb3.Scfld02_0       3612432 3354 +  4147112 I
e caeJap4.Scaffold18194   471159 154 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=0.000000
s ce10.chrX              5333285 580 + 17718866  
e caePb3.Scfld02_0       3612432 3354 +  4147112 I
e caeJap4.Scaffold18194   471159 154 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     61910  19 -    90967 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=441.000000
s ce10.chrX              5333865 7 + 17718866 AATTGCT
s caePb3.Scfld02_0       3615786 7 +  4147112 AATAGCT
i caePb3.Scfld02_0      I 3354 C 0
e caeJap4.Scaffold18194   471159 154 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     61910 19 -    90967 I
e caeRem4.Crem_Contig0   2112995 1018 -  4500979 I

a score=288.000000
s ce10.chrX              5333872 6 + 17718866 -GATTGC
s caeRem4.Crem_Contig0   2114013 6 -  4500979 -GACTTC
i caeRem4.Crem_Contig0  I 1018 C 0
s caePb3.Scfld02_0       3615793 7 +  4147112 GAATATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471159 154 +   823664 I
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     61910 19 -    90967 I

a score=-1797.000000
s ce10.chrX              5333878 25 + 17718866 TAAAAAGTTTGGATTACTG---TACAAC
s caeRem4.Crem_Contig0   2114019 25 -  4500979 TAAAAGAATTCACTTACAG---TACAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3615800 23 +  4147112 T-----AATTAAGTTTCAATCTTAAAAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471313 18 +   823664 taaaaagttt--tttgtag---t-----
i caeJap4.Scaffold18194 I 154 C 0
e cb4.chrX              10677995 14389 + 21540570 I
e caeSp111.Scaffold527     61910 19 -    90967 I

a score=-4901.000000
s ce10.chrX              5333903 26 + 17718866 --TATCATACTTACCACACAAGTTTCCA
s caeRem4.Crem_Contig0   2114044  6 -  4500979 -----------TAGATT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     61929 26 -    90967 --TATATTTCTTACAGTGCAGCGGTTCT
i caeSp111.Scaffold527  I 19 C 0
s caePb3.Scfld02_0       3615823 26 +  4147112 --TCTTCGAATTACCTTGCAGTGgtcca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471331 28 +   823664 TATTATTTACGAACTGTGCAACTTCTCT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10677995 14389 + 21540570 I

a score=27700.000000
s ce10.chrX              5333929 172 + 17718866 TTTTTCGACAGTAGCATTCTTCAAGGTACTTTTCATCTTTAGGATCATATCGATAGTAACCAAACGACGATGACTGCAA------AATAGAAA----AGTAATATT----TATCATACTATTCACGATG------AAAAATACCTCATAAATCCAATAAT-----ATTTTTCCCTAGTCGTTCGTTTTGACCGTCTC
s cb4.chrX              10692384 164 + 21540570 tttctcaaa--aaatgttcctcaAGATACTTCTCATGTTTTGGGTCATACCGATACCA---GAAGCCACGAGCCTGAAA--------TAGAAA----GTTTGTTTTGT--CCTCAAATG------AATA------CAATATACCTCATAGATCCAATAATGACGAAGTTTACTCTCTTCACGCTTTGAGCTTGAC--
i cb4.chrX              I 14389 C 0
s caeRem4.Crem_Contig0   2114050 170 -  4500979 TTTTCCGAATGTAACTTTCCTCCAAATACTTCTCGTTTTTTGGGTCGTACCGATACCATCCGTAGTCGGTTGCCTGCAAGTGTTCAGTAAAGAAgtcattcattttct--tatcaatt--------------------cttACCTGATAAATCCAATAAT-----ACTTTGTTCTGGTGGATCTTTGAGACCGGCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     61955 169 -    90967 TTTTGCGAAGGAAACACTCTTCCAAATACTTCTCATTCTTTGGATCATATCGATACCAACCAGCTTGTTTagcctgaaa-------------a----aatgatttggtAACATTAATTacttgaaaatt------agaaatgcCTGGTAAATCCAGTAGT-----ATTTGGTTCTTGTTGACCGATCCGATCTACGT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3615849 169 +  4147112 tttttctcaaaaaacattcttcaatatacttctcattttttggatcGTATCGGTACCATCCATTGAGTTTGGCCTAAAA-------------A--------ATGTTATTATATAAATCA--GAAGAATTCGTCAGAGTTATACTTGATAAATCCAGTAGT-----ATTTTGTCTTTGTGGACCGTTCTGATCTTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471359 122 +   823664 TCTTTCGTTGATACGCTTCTTCGATGTACCTCTCGTTCTTCGGATCATAACGGTACCAACCAG-----------------------------A-----------------C------------------------GGACTCGATTCATAAATCCAGTAGT-----GTTTCAACCGAGTTGATCGAACTGAACGTCGC
i caeJap4.Scaffold18194 C 0 I 25

a score=-10084.000000
s ce10.chrX              5334101 25 + 17718866 AATGTAGGCTTTGATTTTGTTGGTT
s cb4.chrX              10692548  8 + 21540570 -------TCACCAAC----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2114220 16 -  4500979 AGT---TGCACAGACGAAT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     62124 21 -    90967 AAT---GGTTCT-GTGCTCTTCGTT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616018 18 +  4147112 GTT---GCCTCCAATGCTT----TC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   471481 25 +   823664 I

a score=-714.000000
s ce10.chrX              5334126 203 + 17718866 CTGAATTAAAAA-----TGCAAA----ATT-------GAAC-TTGAAGATCG------------CTTAAAAA---------------------------------ACCTTGTCCTTTGATGTAAGAT-TTTCGGAAATGATCTCTATCAACCATATCTGCACATTCGTCAGCATAATCTTCGGGGCACTGCATATGGATATCCAAGTCGTAGCGAATAG---GCATCGAAAAAAGACTTGGAGAGATTTTCCCACGACAAACGGGACAA
s cb4.chrX              10692556 186 + 21540570 ------TGAAAA-------CAGA----GTTCTTGTAAGGAG---atgaacaa------------tttgaaaat-----------------------------cttaccCTCTTCAT------------TAtctgg-------ttttttgaacatGGCCGAGCAATCTTCGGCGAATTCTTCCGGACACTCTACATCAAAATCGACATCATATCGAATCG---GATTAACAAACAATGAGGTAGGGAGATCTCCACGACACATTGGGCAA
i cb4.chrX              C 0 I 907
s caeRem4.Crem_Contig0   2114236 194 -  4500979 -----TTGCAGAGCC--TGTAAA----ATTCctgtttgaaatttaaaaacaa------------tctCCACA------------------------------ATtaccttttcctt------------cttccgt-------caATGCGAACATAGAGGTACAATCATTAGCGTACTCGATTGGACACTCGATATCAATTGGTAGATCATATCGTTTGG---GATCACGGAACAACTCGGATGGAATTCTTCCTCGGCATGTTGGACAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     62145 190 -    90967 C----CTGAAAC---------GA----AACAGTTTAACAAT-TTGTTAGTAT----------TCATCGAAAA------------------------------C--ACCTTTTCCAT------------CTTCAGA-------TATTGTAAACATTGATCCACAATCTTTTGTGTATTCATCTGGACATACAGTGTGTAAATCCAAGTCACATCTGATGACAGGATCACTGACTAGATGCCTTGATATCCTTCCTCGACAACTTGGACAC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616036 202 +  4147112 A----CTTAAGA---------GA----ATCTTTACAAACAG-CTCTTAGTGT------------Actaaaaa------------------------------ctaaccttttctGCTATCGTTTCttgtttccaa-------gtttttgaacagTGATGCACATTCGTTCTTATATTCTTCTGGGCATTCCATATGCAAGTTCAAGTCACATCTCACGGTACTTTCTTCAACGAGATGTGACGGAATTCGTCCTCTGCATGTTGGGCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471506 240 +   823664 -----CTGAAATATCTATgcaaatatcaattttctgaCAAG--TGTGAGTAGATACTTCATGTGACTGAGaatgaaacgtttttttttctttttaacatACGCATACCTTTTTCAC------------CGGGCAC-------CATGTCAAACATATCTGCACAGTCGCTGATGTATTCTTCCGGGCACTCCATGTGAATGTCCATATCGTTcgaaattg---tattttcaaaaacattggGTGATATTCTTGAGCGGCAAGTTGGACAT
i caeJap4.Scaffold18194 I 25 C 0

a score=8265.000000
s ce10.chrX              5334329 28 + 17718866 TCATTACCCATGGCAAAGTTACCT---GAAA
s caeRem4.Crem_Contig0   2114430 28 -  4500979 TCCAGACCCATCATGTAGTTGCCT---GAAA
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold527     62335 31 -    90967 TCCAATCCCAGATTGTAATTGccttaaaaaa
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616238 28 +  4147112 TCTAATCCCATATTATAATTGCCT---GAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471746 24 +   823664 TCCATTCCCATCGTGTAGTTGTCT-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10692742 907 + 21540570 I

a score=-19115.000000
s ce10.chrX              5334357  55 + 17718866 AGAGAAA--------------AAATTATTG-------------------------------AAAATTGT--------------------------------------------AAAATGTGAAAAAAA-------TTTG--------AAAAAAAAAAAG-
s caeSp111.Scaffold527     62366 139 -    90967 atttatc-atttttttgttataaattttttcagatgaattttgaagagacAACCGGAGATTGAATTTAGactgaaatataaaaacataaatcaATCT------------CAAAACGTCGTGAAATAAA-------TCAGCATCTCGAGCactccaaaaa-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616266 106 +  4147112 ATATACCGAGTATTTGAGTGTCAATTATTT----------------------------ATCAAATTCGT---------------TATATTTCTGTCTTCCTGTTGCTGGCTAAAAAGGGGAAATTGAA-------TATGAGTTT---ACtatacaaaat-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   471770  45 +   823664 --------------------------------------------------------------------------------------------------------------AAAGAAGAGTGCATTGAAAACTTTGTTTgaat-----ataaataaaaatg
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10692742 907 + 21540570 I
e caeRem4.Crem_Contig0   2114458  29 -  4500979 I

a score=982.000000
s ce10.chrX              5334412 5 + 17718866 TAAAT
s caeRem4.Crem_Contig0   2114487 5 -  4500979 tttac
i caeRem4.Crem_Contig0  I 29 C 0
s caeSp111.Scaffold527     62505 5 -    90967 taaat
i caeSp111.Scaffold527  C 0 I 39
s caePb3.Scfld02_0       3616372 5 +  4147112 tcaat
i caePb3.Scfld02_0      C 0 I 58
s caeJap4.Scaffold18194   471815 5 +   823664 caGAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10692742 907 + 21540570 I

a score=5203.000000
s ce10.chrX              5334417 6 + 17718866 CTTACT
s cb4.chrX              10693649 6 + 21540570 CTTACT
i cb4.chrX              I 907 C 0
s caeRem4.Crem_Contig0   2114492 6 -  4500979 cGCACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     62549 6 -    90967 CTCACT
i caeSp111.Scaffold527  I 39 C 0
s caePb3.Scfld02_0       3616435 6 +  4147112 CTCACT
i caePb3.Scfld02_0      I 58 C 0
s caeJap4.Scaffold18194   471820 6 +   823664 TTCATT
i caeJap4.Scaffold18194 C 0 I 1022

a score=54336.000000
s ce10.chrX              5334423 107 + 17718866 TTTCAGGCAAACATAGCAGAACTCATGCCCGCAGTTCTCTATTCGAGTTGGGATAGTGAGCTTATAGTAGCAAATGTAGCAAATGTCGTGATCCTGTTGGAACCCTT
s cb4.chrX              10693655 107 + 21540570 CTTAATGCACGTATAGCAAAACGAGTGTCCACAGGCTGGAATTCGTGTTGGAACCATTTGTTTGTGAAAGCAAATGTTGCATTTCTCGTCTGTCTGTTGGTATCCCT
i cb4.chrX              C 0 I 3813
s caeRem4.Crem_Contig0   2114498 107 -  4500979 TTTCAAGCAAGCGAAACAGAATTCATGTCCACAATCTTGAATTCTTGTTGGAATTGATGGTGGGTAGAGACAAATGTTGCAAATATTGTCAGTTTGCCGGAACCctt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     62555 107 -    90967 TTTAAGGCAAACGAAACAGAATACATGGCCGCATGTATCGATTCTTGTTGGGATTGTGGGCACGTATAGACAAATATTGCATAGATTTTCAGTTTGCTGGAATCCTC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616441 107 +  4147112 TTTGagacaaacaaaacaaaacacgtGCCCACACAAGTCGATACGAGTAGGAATTGTTGGCTCAGCAAGACAAATGTTGCATAGATTCTCGGATTGTTGAAAACCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   472848 107 +   823664 TTTTAAACACATAAAGCAGAAAACATGACCACACGTGTCGATTCTGGTAGGCATTGTGTGTTTGTAAAAGCACACACTGCAAGTGTCGTCCGTCTGTTGAAAGCCCA
i caeJap4.Scaffold18194 I 1022 C 0

a score=713.000000
s ce10.chrX              5334530 2 + 17718866 CT
s caeRem4.Crem_Contig0   2114605 2 -  4500979 cc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     62662 2 -    90967 CG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616548 2 +  4147112 Ct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   472955 2 +   823664 CT
i caeJap4.Scaffold18194 C 0 I 1357
e cb4.chrX              10693762 3813 + 21540570 I

a score=3867.000000
s ce10.chrX              5334532 14 + 17718866 TTTTTCACTGAAAA
s caeRem4.Crem_Contig0   2114607 14 -  4500979 attttctctgaaaa
i caeRem4.Crem_Contig0  C 0 I 183
s caeSp111.Scaffold527     62664 14 -    90967 GTTCTTCCTGAAAC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616550 14 +  4147112 tttcgctctgaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=-2048.000000
s ce10.chrX              5334546 12 + 17718866 TTTGAAAGTATA---
s caeSp111.Scaffold527     62678 15 -    90967 AATGaacattgaata
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3616564 12 +  4147112 ta-gaaaatcata--
i caePb3.Scfld02_0      C 0 I 1035
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeRem4.Crem_Contig0   2114621 183 -  4500979 I

a score=551.000000
s ce10.chrX              5334558 126 + 17718866 CGATCGTGCGAA--------CCAAATTTGAAAAACAACTCACTGTATGGTACTCCGGCGCATCCCAAAACG----CCATACTGCTTAGCTTGAGAACGGGTGATTCGCCTGAAAT-ACCAGAATTTAAGACTGTTTCAA
s caeSp111.Scaffold527     62693 138 -    90967 tttttattggaaaagtTATGTTaagagtgaaaaaaaacaaactgtAAAGGCCTCCTGCA-ATACCAATGAGATTCTTGAACGTTTTAGCTGAGGATTTTGgtattcttctgaaataaacaCAATTTGGTTTTATTTAAA
i caeSp111.Scaffold527  C 0 I 820
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeRem4.Crem_Contig0   2114621 183 -  4500979 I

a score=0.000000
s ce10.chrX              5334684 485 + 17718866 TTTCTGTGTACCCTAAAAAGTTTTTACTACTTTAAAAACGTATTGTCGTTCAGTTTTGAGCTTTGGGATATTGGTTTTCAAGTTTCAATTAAGTTACAATTAAAATTTTTTTACACTGATTCAAATTTTTGAATTTAAAATTTATGTTGATAACAAGGtttaattgattaaatattaaaatttattGCTGGTAAAAAGAAATAAATTTTGATTGAAAAAACGAAAATAATTTGTTAAAAAACTAGCTGAAAATTGCTGTTTTCGGTCAATGAAAACTTTTTCACACAATTTAAAAACCCTTCTTCAGATTTTCCACATAAATCAATTTAATTTTCAAAAAGATCGAAAAATTTGCTATATTTCTATATTAGTTGGTGATTTGAAAAGTTGAATAAGCTTTTTCGTGGATTTGTTTTTCTGCAAATTTCCCACAAAACTTCAAAAAACCTACTTCACTTCTGAAGTATTGGGTCGATTTCTGTACT
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeSp111.Scaffold527     62831 820 -    90967 I
e caeRem4.Crem_Contig0   2114621 183 -  4500979 I

a score=3257.000000
s ce10.chrX              5335169 116 + 17718866 TGAGCATTTTCTCAAAGTCGATTGTATGTGTGACGCCAAAAATACTGACTTTGCAAGTTTTTTTCTTTCGTTTATACGAGTTTTCAATGTGTTCTTGTAAGTCCTTATGAAATTCG
s caeRem4.Crem_Contig0   2114804 116 -  4500979 TAATCATTTGAACAAAATCCAAATCCCACGTATCACCAAAAACGTAAATTTGACACATTTTCTTTCCTCTATTGTACGACGTCTCAATGTGTTCTTGCACATTTGGGTGAAACTCG
i caeRem4.Crem_Contig0  I 183 I 637
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeSp111.Scaffold527     62831 820 -    90967 I

a score=0.000000
s ce10.chrX              5335285 822 + 17718866  
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeSp111.Scaffold527     62831 820 -    90967 I
e caeRem4.Crem_Contig0   2114920 637 -  4500979 I

a score=294.000000
s ce10.chrX              5336107 22 + 17718866 TCAAACATGAAGCGGAAATTGT
s caeSp111.Scaffold527     63651 19 -    90967 TCATGAATACAGCGGAAAC---
i caeSp111.Scaffold527  I 820 C 0
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeRem4.Crem_Contig0   2114920 637 -  4500979 I

a score=-1055.000000
s ce10.chrX              5336129 12 + 17718866 GGAACTAGTATC---
s caeRem4.Crem_Contig0   2115557 12 -  4500979 GAAATGAATAAT---
i caeRem4.Crem_Contig0  I 637 C 0
s caeSp111.Scaffold527     63670  9 -    90967 ------ACTGATGTC
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3616576 1035 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=18232.000000
s ce10.chrX              5336141  75 + 17718866 CCCCTCAATATTCGAAA-TTCGAAATTCAATAATTGCCCTCGTGAGGGGGCACATGACACGTCCATTGTTGTGCCG-----------------------------------
s caeRem4.Crem_Contig0   2115569 108 -  4500979 GTCCATAATATCGAAA--TTCCGAATTCAATAATTGACCTCGTGAGAGGGCACATGACACG-CCATTGTTGTCCTGTCAGACGTTACCGAAGTCGTAGAACGATGGCATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     63679  84 -    90967 ---CATAATGTTGGAAA-TtcggaattcaataattgcCCTCATGAGAGGACACATGACATG-CCATTGTTATGCTGTCAAACGTTACCG----------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3617611  76 +  4147112 CCCTTTGACGTTGGGGATTTCGGAATTCATAAATTACCCTCGTGAGAGGACACATGACAAG-CCATTGTT------------GCTGCCG----------------------
i caePb3.Scfld02_0      I 1035 I 3520
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=-15005.000000
s ce10.chrX              5336216 325 + 17718866  
s caeRem4.Crem_Contig0   2115677 504 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     63763 431 -    90967  
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e caeJap4.Scaffold18194   472957 1357 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=17637.000000
s ce10.chrX              5336541 135 + 17718866 GTGTAATAAACTCGGGGCGAACTATTGTTCGCCCTCTATT---------------CAACCCACATTTCGCGCACACTCT---GCAAAAGATTCTGGGTCTCCGCGAAGCGCGTGATGTAACTGTCTGTGTCTATGCCT----CTCTGTGG-GTGT-----TTG
s caeRem4.Crem_Contig0   2116181 139 -  4500979 gTGTAATAA--TTTAGACGAACTTTCGTTCACCCCTCTTTCCACCA---------CAACCCACATTT-TCGCGCACTCTCCTCCGCTTGACTCTGGGTCTCTGCGGAGCGCGTGATG--------TGTGGCTGTATTC----GTGTGTGGCGGGTGTACAATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     64194 142 -    90967 GTGTAATAA--TTCAGGCGAACTTTTGTTCACCCCCCTCATCTCCATCTTCCATCCAACCCACATTTCTCGCGCACTCTCCGCCGCGGGAGTCTGAGTCTCCGCGGGGCGCGCGTGA--------TGTGACTGCAGC------TGGGTGGCGTAT-----ATG
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   474314 127 +   823664 GTGTAATAA--TTCAGGCGAACTTTTGTTCATCGCACC-----------------CAACGCACATTTCTCGCGCACTCT---TTCCGACCCTCTCCGTCTCTCGTAGGCGCGTGATA--------CTCGTATCGACCCGCCGCTCTTCGG-CTGT-----CTG
i caeJap4.Scaffold18194 I 1357 I 2128
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=519.000000
s ce10.chrX              5336676 334 + 17718866 TATGTCTATCT-ATCTACACGTT---CTTGCTTCTCTA-------CCACATCTTATACTTGTGTGGTCTGCCCTCG--------------CGAGAGTGTACGCGGCTCGACGGGTGTGTTGTGGCCGGCGGCGGCGGACGACGACCGCGACGCAGTATG-CCGTCCATTTTGGTGTTTGAGAGTTATATACACAA----ATA-CAAATAACAAATAAAAAGAAGCGCTCATAAGGAGTGGAAGACTAGACAAAAAGTAAAACCATAATATTACTGTAAAGAATTTGGACTAAAATATATAAATCGGTATAAAATTACGTTAAATCTA----AGTTTTTCTTGAAACAAAT---------------TTCTGTAAATCTAAATTTT
s caeRem4.Crem_Contig0   2116320 309 -  4500979 TGTGTCCGTCC-GTCGACCCGTTATACCCCATCTCTCGCAGTCCCCCTTGTTGTCCATTTTTCTTGTCTGTCTCCG-----------TCCCGAAAGTGTATACGACGTG------GTGTTTTGGAG----------------------GATGCAGTATG-CCGTCTCTTATGGTGTTTGAAGGTT---TACAAAATGCTATACTAAATGGCTTGTTGAGTGA------TTGAAACTGATAACAATTAAACAAACAGAGAAACAACAATACAGttttcaacaat----------------aaatt---------tttcattaaatttaatttcactccatttgtaaataattttttgcgaCAAAGGTCATGCAAAgccatttttt
i caeRem4.Crem_Contig0  C 0 I 346
s caeSp111.Scaffold527     64336 258 -    90967 TGTGTGCCTCCTATCGACCcgttat-tttcattcttcg-------CCCCGGCGTCCatctttc---tctgcgtctgATGCAATCCACTCCCGAAAGTGTACACGACGTG------GTGTTTTGGAAG---------------GACGACGATGCAGTATGCCCGTCTCTTTTGGTGTTTGA---------GTAAAATGCTATA-TACACAATGAGTTCAGT-----------------AGTGTGcttaaa-aattattagaGCAAagata---tttagaaaaat----------------------------------gtcaGATTCG----TACACCGATTGCAAATAAT---------------TCGTACAAA----------
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e caeJap4.Scaffold18194   474441 2128 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=-6490.000000
s ce10.chrX              5337010 900 + 17718866  
s caeSp111.Scaffold527     64594 561 -    90967  
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e caeJap4.Scaffold18194   474441 2128 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I
e caeRem4.Crem_Contig0   2116629 346 -  4500979 I

a score=-1789.000000
s ce10.chrX              5337910 59 + 17718866 CCGATGCCAAGCGTTCACGAAGCATATCCTTATCGTCGCTGTAGAGTTATATTTTATAT
s caeRem4.Crem_Contig0   2116975 53 -  4500979 CCGATACAGAACGTTTATTTA--AAATCGCTATCTTCTCCACGG---TATATCAC-TTT
i caeRem4.Crem_Contig0  I 346 C 0
s caeSp111.Scaffold527     65155 22 -    90967 ---------------------------------CTTCACGAAAG---GATATCCT-TAT
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e caeJap4.Scaffold18194   474441 2128 +   823664 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=180.000000
s ce10.chrX              5337969 1 + 17718866 T
s caeRem4.Crem_Contig0   2117028 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527     65177 1 -    90967 C
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   476569 1 +   823664 T
i caeJap4.Scaffold18194 I 2128 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I
e cb4.chrX              10693762 3813 + 21540570 I

a score=-1642.000000
s ce10.chrX              5337970 5 + 17718866 CGTCT
s cb4.chrX              10697575 4 + 21540570 -CATT
i cb4.chrX              I 3813 I 1
s caeRem4.Crem_Contig0   2117031 4 -  4500979 -GTAT
i caeRem4.Crem_Contig0  I 2 I 1
s caeSp111.Scaffold527     65178 2 -    90967 ---TC
i caeSp111.Scaffold527  C 0 I 1
s caeJap4.Scaffold18194   476570 5 +   823664 TGCCT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3617687 3520 +  4147112 I

a score=354131.000000
s ce10.chrX              5337975 442 + 17718866 GTTCCGATCCG-CTAAGG---GATAAAATCAAATGGGCGATATATTAGTTGAAGGTGTG----TGTGTACACTCA-GGACGAGTG---GGAACGATGTCAG----------CGCCGTGTAGCATCGTCGTCAC-TGAAGTCGAA-GAAAGAAGACGGTGTGATGTGC------------------GGATCG-ACGGGAGAGAGAAAGGGGCAAAATTGGAGAGAGATAAAGAAAAGTGAAACGAACTGGCATTTTC----------TGGC--GGAGGATTCG-TTGGAAACTAGGAGAGATGAAGAGGCGCGGACGACA---ACACA-GTCGATAGGCGATGCAGTCCGTCCGGTGTCCGCTGCGCACCATACTGATCCACACTTTCT-CCCAAAACATGCGGGTCTATTCGCTTATACTTCTCTGTTTCATTACTTTTGTCCATGGGCAAGAAAAAGCTGAAGTGGATATTCGAGTTTCAGGAGCATGTTCGCCAAGTAAGT
s cb4.chrX              10697580 462 + 21540570 GTTCCAATCGC-TAAATG---CATGAAAAC-CATA---GTTGTATCATCCGAAGGTGTATCGCTGTGTACACTCA-GGACCA-------GAACGATGTCAgccgtcgtcgtcgtcgt-----cgcgCCGTCAC-TGGAGACGATCCGAA---GACGGTGTGATGTGCGTATGTGTGTATTGGGAAGGATagaaaggaagag--aaaacgGCGAAC-TGAGAGAAGATAACGAAAAGTGAAACGAACTGGCATTTTCGGATTGTGTGAGAG--AGGGAGATCGAG---------GAAGGGAAGAGAGGGCGCGGACGACGACAACACA-GCCGATGGGTGATGCAGTCCGTCCGGTGTCCGACGCGCACCATACTGATCCACACTTTCT-CCCAAAACATGCGGGTCTATTCGCTTATACTCCTCTGTTTCATTACTTCTGTTTATGGGCAAGAAAAAGCTGAAGTGGATATCCGAGTTTCAGGAGCATGTTCcccaagtgagt
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2117036 413 -  4500979 GTTCCAATTGCTTGAAGG---GATAAAATC-AATGGGCGTTATATCATTAGAAGG--------TGTGTACACTCA-GGACTAGTG---GGAACGATGTCAG----------CGCCGT-----CGCGCCGTCAC-TGGAGACGAT-TAAA---GACGGTATGATGTGT------------------GGATAG-ACGGcagag--aaaaggggaaaa-tg-----agataaagaaaagtgaaacgaACTGGCATTTTC----------CGAA--GGGGGGATCG-T---------GAAGAGATGAAGAGGCGCGGACGACT---ACACA-GCCGATAGGCGATGCAGTCCGTCCGGTGTCCGCCGCGCACCATACTGATCCACACTTTCT-CCCAAAACATGCGGGTCTATTCGCTTATACTTCTCTGTTTCATTACTTTTGTCTATGGACAAGAAAAAGCTGAAGTGGATATACGAGTTTCAGGAGCATGCTCTCCAAGTGAGT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527     65181 419 -    90967 GTTCCAATtgt-taaaagaaaaagaaaatc-gatgGGTGTTATATCATCCGAAGG--------TGTGTACACTCA-GGACTAGTG---GGAACGATGTCAG----------CGCCGT-----CGCGCCGTCAC-TGTAGACGAA-TGAAGACGACGGTGTGATGTGT------------------GGATAA-Atgggagag--aaaaggggaaa-----gaagagataaagaaaagtgaaacgAACTGGCATTTTC----------GGAC--GGGGGGATCG-T---------TGAGAGATGGAGAGGCGCGGACGACGACAACCCAGGCCGAGAG-----GCAGTCCGTCCGGTGTCCGACGCGCACCATACTGATCCACACTTTCTCCCCAAAACATGCGGGTCTATTCGCTTATACTTCTCTGTTTCATTACTTTTGTTTATGGGCAAGAAAAAGCTGAAGTGGATATTCGAGTTTCAGGAGCATGTTCCCCAAGTAAGT
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3621207 418 +  4147112 GTTCCAACTGT-TAACGG--GGAGAAAATC-AATGGGCGTTATTTGATTCGAAGG--------TGTGTACACTCCTGGAGAAGTG---GGAACGATGTCAG----------CGCCGT-----CGCGCCGTCACTTGAAGATGTA-CGAA---GACGGTGTGATGTGT------------------GGATAG-ACGGgagaggaaaaggagaaaa-----gaagagataaagaaaagtgaaacgaACTGGCATTTTC----------CGACAGGAGGGGATCG-T---------GGAGAGATGAAGAGGCGCGGACGACGACAACACA-GCCGATAG-----GCAGTCCGTGCGGTGTCCGTCGCGCACCATACTGATCCACACTTTCT-CCCAAAACATGCGGGTCTATTCGCTTATACTTCTCTGTTTCATTACTTTTGTTTATGGGCAAGAAAAGGCCGAAGTGGATATTCGAGTTTCAGGAGCATGTTCCCCAAGTaagt
i caePb3.Scfld02_0      I 3520 C 0
s caeJap4.Scaffold18194   476575 401 +   823664 GTTCGATCTCA-AAAAAGAAAGCCCAAATA-AATGGGCGTCATATCATTTGTAGG--------TGTGTACACTCC-GGACTAGTGAGAGGAACGATGTCAG----------CGCCGT-----CGCGTCGACAC-TGAAGATGAA-GGGA---GATGATG---TGTGT------------------GGACAG-ACGGGAGAG-------GGAACA---------AGATAAAGAAAAGTGAAACAAACTGGCATTTTC----------GGAG-------GATCG-T-----------AGAGATGCAGAGGCGCGGACGACA---ACAGGAGGCGATAGGCGATGCAGACCGTCCGGTGTCCGCTGCGCACCATACTGATCCACACTTTCT-CCCAAAACATGCGGGTCTATTCGCtaattcttcttttctttattACTTATGTTTATGGACAAGAAAAAGCTGAAGTGGATATTCGAGTCTCCGGAGCATGCTCACCAAGTAGgt
i caeJap4.Scaffold18194 C 0 I 152

a score=310.000000
s ce10.chrX              5338417 2 + 17718866 TC
s cb4.chrX              10698042 2 + 21540570 tt
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2117449 2 -  4500979 TA
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold527     65600 2 -    90967 TT
i caeSp111.Scaffold527  C 0 I 205
s caePb3.Scfld02_0       3621625 2 +  4147112 ta
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194   476976 152 +   823664 I

a score=-43888.000000
s ce10.chrX              5338419  45 + 17718866 ------------------------------------------------------------------------------------------------------------------------------CAAATTT----------------------------------------ATATCTCCCTTGTTCTGAAAAGCAAACCTAGATTCAAA------------------------------------------------------------------------------------------------------------
s cb4.chrX              10698050 207 + 21540570 agcattATGACTCTCAGTTActgg----tttttca---------------aatatttgaaaacataaaaatgcttaaaatttGACGTTTCATGAGGATTCGCAAGATGAATCGTTA-------ACCTTAATA-----------------------------------------GTTTCCTTTTTGctcgaacttcaaaaaacaatggCTTCATGAAATTTTGCTTGGCTAGAAAACTACAATCTCTTctaatttccttctttttacTGATCATA---------------------------------------------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2117457 195 -  4500979 cgtttctttattttc---------------------------------------------------------ctT--AGTTGAACAT------------------TTGAACTCTTCTTTTGGTACTATAATATGAAAAACTAGGTATCTCATTAAAAGTTATCACATGACTCTGCTTTCATCTGGTCAAGATCTCTAACCAGAACGTCAAAATGACTTTCTAATCAACCAAAAAAC--CTAGCCACTGTGAATATTGACATTCAAAGaatggaa---------------------------------------------
i caeRem4.Crem_Contig0  I 6 I 1
s caePb3.Scfld02_0       3621629 240 +  4147112 --caattttttcttaaagtaTGGGAAAACCTTTCAAGAGAAAATGCGAATAGCAATTCATTCCG--------TTT--ATTAGGTCAT-------------------TAAAGCTTTCCCTGGTTCACTAAACATAGAACC----------------------------------GTCTGAATCCGTTCCTAGT----AAACCGAAAATCATAGTAAA---------AACCGAACGAT-GTCCGCTTCTTAagatattcaagaaaaaataattgtacCTTAATCAGCTACAAAGCTACGAAAATACCTCAAGACTTATAAA
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194   476976 152 +   823664 I
e caeSp111.Scaffold527     65602 205 -    90967 I

a score=151436.000000
s ce10.chrX              5338464 135 + 17718866 TTTCAGTCTACTTGTCGAGGAAAGGAATTGATATCAACAAGTACCGACCGAGTATTCGTTTCAATCCAGACAAGATTCAGTTAATTCCAAAGAATCCAGTCATTCCAGGGTGTATCAAAATTAAGGCAGAAGGTA
s cb4.chrX              10698257 135 + 21540570 TTGCAGTCTACTTGTCAAGAAAAGGAATCGACATCAACAAGTACCGACCGAGCATACGTTTCAACCCAGACAAGATTCAAttgatcccaaaaaatccagtCATTCCAGGATGTATCAAGATCAAAGCAGAAGGTA
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2117653 135 -  4500979 tttcagtttactTGTCAAGAAAGGGAATCGACATCAACAAATACCGGCCGAGTATACGCTTCAACCCAGACAAAATCCAACTAATTCCAAAGAACCCAGTTATTCCAGGATGTATCAAAATCAAAGCAGAGGGTA
i caeRem4.Crem_Contig0  I 1 I 37
s caeSp111.Scaffold527     65807 135 -    90967 TTTCAGTCTACTTATCGAGAAAAGGAATTGATATCAACAAATACCGGCCGAGTATACGATTCAATCCAGACAAAATTCAGCTGATTCCAAAGAATCCAGTCATTCCGGGATGCATCAAAATCAAAGCAGAAGGTA
i caeSp111.Scaffold527  I 205 I 14
s caePb3.Scfld02_0       3621869 135 +  4147112 TTGCAGTCTACCTATCAAGAAAGGGAATCGACATCAACAAATACCGGCCGAGTATACGATTCAACCCAGACAAAATCCAACTGATCCCAAAGAACCCAGTTATCCCAGGATGTATCAAAATCAAGGCagaaggtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   477128 135 +   823664 TTTCAGTCTACCTGTCCAGAAAAGGAATCGACATCAACAAATACCGACCAAGTATAAGATTCAATCCAGATAAAATTCAACTCATTCCAAAAAATCCAGTAATCCCAGGATGCATTAAAATTAAGGCTGAAGGTG
i caeJap4.Scaffold18194 I 152 C 0

a score=303.000000
s ce10.chrX              5338599 3 + 17718866 GGT
s caePb3.Scfld02_0       3622004 3 +  4147112 agt
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold18194   477263 3 +   823664 CGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10698392 13 + 21540570 I
e caeSp111.Scaffold527     65942 14 -    90967 I
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=451.000000
s ce10.chrX              5338602 34 + 17718866 GAAATTTGCAACATCAATTCTGAACTAAGAAAAT
s caeJap4.Scaffold18194   477266 34 +   823664 Tggttttgaaattcaaacaaaaaattaaaaaaat
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3622007 42 +  4147112 I
e cb4.chrX              10698392 13 + 21540570 I
e caeSp111.Scaffold527     65942 14 -    90967 I
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=0.000000
s ce10.chrX              5338636 362 + 17718866 AAAAATTGTTTAATTTAAATTTGAACTAGAGCTAATAAGTATGCTGCAAGTTTTAGCAAAAAAATTCACCTGGTTTAATTTGAGTCTCAATATCATGCAAGTAAACAAATTTGGCATGCTTGCTTTTTatttaaaatcagaggattaaaggaggatacgtttctcaagcacggtaggtctaggatctatattatggtgctccttctttgggctattgttgaagccacggaaactgtgaaatataatccagtcatgaaatacttcacttcccagtacaggctgaatgaagctagagggcaggatttgaacttgtgacctcgtgattccttgcggccatcactaccgactgagctatcCCCGCC
e caePb3.Scfld02_0       3622007  42 +  4147112 I
e caeJap4.Scaffold18194   477300   0 +   823664 C
e cb4.chrX              10698392  13 + 21540570 I
e caeSp111.Scaffold527     65942  14 -    90967 I
e caeRem4.Crem_Contig0   2117788  37 -  4500979 I

a score=242.000000
s ce10.chrX              5338998 4 + 17718866 AAAA
s caeSp111.Scaffold527     65956 4 -    90967 GAAA
i caeSp111.Scaffold527  I 14 C 0
e caePb3.Scfld02_0       3622007 42 +  4147112 I
e caeJap4.Scaffold18194   477300 0 +   823664 C
e cb4.chrX              10698392 13 + 21540570 I
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=-1422.000000
s ce10.chrX              5339002 31 + 17718866 TTGTCAAACTATTTTCCAAAATTCT---TAAACC
s cb4.chrX              10698405 33 + 21540570 TTTTCCAACTA-GTCTCAATTTCCTAGATTGATT
i cb4.chrX              I 13 C 0
s caeSp111.Scaffold527     65960 16 -    90967 ---------------TTAGTTACCT---TTCACT
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3622007 42 +  4147112 I
e caeJap4.Scaffold18194   477300  0 +   823664 C
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=-2695.000000
s ce10.chrX              5339033 12 + 17718866 GTTTAAATAAAA
s cb4.chrX              10698438  8 + 21540570 cttt--ataa--
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold527     65976  4 -    90967 ATTT--------
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   477300  3 +   823664 ------gta---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3622007 42 +  4147112 I
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=91.000000
s ce10.chrX              5339045 1 + 17718866 T
s caeJap4.Scaffold18194   477303 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3622007 42 +  4147112 I
e cb4.chrX              10698446 7 + 21540570 I
e caeSp111.Scaffold527     65980 0 -    90967 C
e caeRem4.Crem_Contig0   2117788 37 -  4500979 I

a score=268807.000000
s ce10.chrX              5339046 368 + 17718866 TTACAGGAGTTGAAATCACGAGACCAACAAAAAATTTGATTGCCGAAGTTGAAATGAGAATCGGAGGAACTCCGGATCCAAACAATCCATCCCTTCCATGCTCGAAAAAAATCGACGAGAAGGTGAACCAGTGCCCGTGCGCCAAATTGGAAGGATCTTGGTAA-----GTTTGTG------AAGCATATATTTAAAC-------CTCA---AAATTATTATTATTTAGCGTGTTCTGCGACTTCTGCAAGCAACTTAAGGCTCAAACGTCCAAAATCACACCTAGCAAGCTCAGCAGACCTGAACACAAGTTGATCGATGAGGATTGCAAGTATGC--CATT----TTGTTTTCACTC----------TCATTAC-TCGTGGTGTGAATAGTACAAGTTTTTGAA
s cb4.chrX              10698453 378 + 21540570 tttcaggtgtTGAGATCACCAAGCCAACCAAAAATCTGATCGCTGAAGTTGAGATGAGAATCGGTGGCACTCCAGACCCAAACAATCCATCTCTTCCAtgctcgaaaaaaattgacgagAAGGTTAACCAGTGTCCATGTGCCAAATTAGAGGGATCTTGGTAATCGAAATATTCC------TATCATTTTTATCCTG-------CTCA---AATT------TCTTCAGCGTCTTCTGTGACTTCTGCAAACAACTCAAAGCCCAATCATCCAAAATCACAGCCAGCAAATTAAGCAGACCCGAACACAAATTGATCGATGAGGATTGCAAGTATGT--GTTGTGATGTGTTTTCACTTGCCCTCCTGCCAGTCAA-TTATGTC--AAAAAGTACACG-TTCCGCG
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2117825 363 -  4500979 TCACAGGTGTTGAGATTACGAGACCAACCAAGAACTTGATTGCTGAAGTTGAGATGAGAATCGGAGGAACTCCAGATCCAAACAATCCATCCCTCCCTTgttcaaagaaaattgatgagaaagTGAATCAGTGTCCATGCGCTAAATTAGAGGGATCTTGGTAA---AATTCTGCT------AGTAATTTTCTTTTGG-------ctcattttata------ttttcagtgtctTCTGTGATTTCTGCAAACAACTCAAAGCCCAATCGTCTAAAATCACTGCTAGCAAGCTTAGCAGACCCGAACACAAACTGATCGATGAGGATTGCAAGTATGT--AATG----GTGTTTTCACTT----------CAGTCAA-TTATGTC---AAAAGTACAAG-TTTTCCT
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold527     65980 356 -    90967 ---CAGGAGTTGAGATCACCAAGCCAACTAAGAATTTGATTGCTGAagttgaaatgagaattggAGGAACTCCAGACCCAAATAACCCATCTCTTCCGTGctcaaagaaaattgatgagaaaGTCAACCAATGCCCATGCGCCAAATTAGAAGGATCATGGTAC--------TGC---------TCAATTGATAAAGGACGATGTCTCA---TATT---GAATTTACAGTGTCTTCTGTGATTTCTGCAAGCAACTCAAAGCccaatcatcaaaaatcacgGCAAGCAAGTTAAGCAGACCAGAACATAAGTTAATTGACGAGGATTGCAAGTAtgt--catt----ttgttttccatt-----------gttCGGCTTGTC------AAAGTACAAA-TTATGGG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3622049 358 +  4147112 TTTCAGGTGTCGAGATTACCAGACCAACAAAGAACTTGATTGCTGAGGTGGAAATGAGAATTGGAGGAACCCCAGACCCAAACAATCCATCTCTTCCATGCTCGAAGAAAATCGACGAGAAGGTTAACCAATGCCCATGTGCCAAGTTGGAAGGATCATGGtat--------ttcc------atttgttttgtCAATGAGAA---CTCT---AATT------TTTGTAGTGTCTTCTGTGATTTCTGCAAACAACTTAAAGCCCAATCATCGAAAATCACGGCTAGCAAGCTAAGCAGACCAGAACATAAGTTGATTGACGAGGATTGCAAGTATGT--TATT----CCGTTAT-GGGT-----------GTTCAA-TTATCTC--AAAAAGTACATG-TTCCGCG
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18194   477304 372 +   823664 ttccaGGAGTAGAAATCACAAAACCCACCAAAAATTTGATCGCCGAAGTCGAGATGAGAATCGGAGGAACTCCAGATCCAAATAATCCGTCACTGCCGTGCTCGAAGAAGATTGACGAGAAAGTGAATCAGTGTCCATGCGCTAAATTGGAAGGATCCTGGTAA----tatattcccaaaaaaaaaattttctaaaaa-------aaaa---aaat--caacgctTCAGCGTATTCTGCGACTTCTGCAAGCAACTCAAAGCGCAATCGTCGAAAATCACCGCCAGCAAACTTAGCCGACCCGAACACAAGTTAATCGATGATGACTGCAAGTATGTCACATT----CTGATTTCACGC----------CACTCAA-TTATGTC---AAAAGGACACGTTTTTGTG
i caeJap4.Scaffold18194 C 0 I 150

a score=587.000000
s ce10.chrX              5339414 78 + 17718866 CAA--CATCCGTTCCTCTAC-GGAAAGTGAAAGCTAGAACCGCGACGGGTTCGGATGTACTTGTCTGTTTGATTGATTTGT
s cb4.chrX              10698831 56 + 21540570 CTA--TTTCCATTTTGCTAATTGCTACTGCAAAACG-----------GGTTCGGATGTACTtgtattcg------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2118188 60 -  4500979 CCAGTTGTTCCGTTCATTAATTGCTAGTGAAAACTGG---------AGATTTGCGTGTACTTGTACGCA------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     66336 70 -    90967 CTA--GGTCCAATTATCT-------AGCAGAAACTGGAACCAGTGCGGGTTCACGTGTACTTGTACGCTC--ATTATctgt
i caeSp111.Scaffold527  C 0 I 32
s caePb3.Scfld02_0       3622407 74 +  4147112 CTG--AATCCGTTCGTGtaa-taaaagtgaaaactgGAACTAGT--GGGTTCACGTGAACTTGTActtgt--ttgattttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   477676 150 +   823664 I

a score=-9151.000000
s ce10.chrX              5339492 74 + 17718866 GATTTGGCAAAACTGCGGGTCTCTATAGCCTCTACAGTCTCGCAAAAATCA-TGTAATCA-----TGTTTTCACTCACAT
s cb4.chrX              10698887 39 + 21540570 ---------------------ttt-----tttttaaatcttgtTTGGGGGATTGTTATTT-----TGTCT----------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2118248 53 -  4500979 ----------AACAGTCAGCTTTG-----CTTTTCAATCTCGCATGTCCG--TATCATCCATCAATGTCA----------
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3622481 32 +  4147112 -----------------------------------aatcttttGTATCTTACCGTAGTCA---GATATCT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   477676 150 +   823664 I
e caeSp111.Scaffold527     66406 32 -    90967 I

a score=-23.000000
s ce10.chrX              5339566 2 + 17718866 CT
s caeJap4.Scaffold18194   477826 2 +   823664 CA
i caeJap4.Scaffold18194 I 150 C 0
e caePb3.Scfld02_0       3622513 0 +  4147112 C
e cb4.chrX              10698926 3 + 21540570 I
e caeSp111.Scaffold527     66406 32 -    90967 I
e caeRem4.Crem_Contig0   2118301 3 -  4500979 I

a score=302964.000000
s ce10.chrX              5339568 529 + 17718866  
s cb4.chrX              10698929 473 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2118304 494 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold527     66438 515 -    90967  
i caeSp111.Scaffold527  I 32 C 0
s caePb3.Scfld02_0       3622513 517 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   477828 564 +   823664  
i caeJap4.Scaffold18194 C 0 I 362

a score=8204.000000
s ce10.chrX              5340097 290 + 17718866 ATTTCA--TCCGACTGCTCT-TTCACTGTACGCCGAATA--AAAACTATGAAAAAGTGAAACAAAAGTTCGTGACATTAGATGGCAATCG------------AATCGAAAACATC--TT------CATATCCTGTCTATCCTGTTTCT------TTTCCT----------AGTGATAAG-ATTGA----AAT-----AGAAAGGCGCCGGTTCTCGAGAAGAAGCTGATAAACTTGC------------------AAT----TCATTGTTCGCACTCTACACATGGAAC-----------TCTCCTTTCTAATAATATTTTGG-TGTTTAACGTTTTGTGTTAAATGTGTAGCCTATACTTCTGAT---AAGAATTC---A
s cb4.chrX              10699402 267 + 21540570 ATCAAAGAAATGACTGTGCCCCTCCTCTTTCAACCaaataaaaaac----------tgaaaatcaa-attgttACA---------AGATA------------TATCGAAAACATCAAACCCCAAACAGATCCTGTCAATCCTGTTTTTATCTGATcctcaaaaagtgaaaagtgaTAAGGATTTCTTTTcatc----------------------gagaagaagaaga-aaacttgC------------------AATCA--TCATT---GTTTGAA-----ATGGAACCCAGGTCgctatttttatgtt-------ttttgc-tGATTAACACTGTTC----------TAGCCGATACG---------AAAAGTTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2118798 304 -  4500979 ATTGGA------ACTGTCATCTTAAtttgaaaaccaaat--aaaac----------tgaaactgaatatTGTTACATATCCAAGGGAATT------------CATCGAAAACATC--CTTTCGGTGATATCCAGTCTATCCTGTTTCTTTC---Ttctgggaagaaaaaaaatgataagaataga----aatcagaaagcaa-------------gaaaagaaagaaa-aagctggcgcctcgagaagaatagagaagCAATTCATT----TCAAAC-----ATGGAACCTCCGT-----TTTTGATTCT-------TTGTGTGTGTTCTATTCTGTTCTTTCGATGTGTAGCCTATAAGGACAAAGACAATAGTTC---T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     66953 293 -    90967 TT------CTCTAATGCTCT-GTGACATTACACccaata--aaaac----------tgaaactgaaaattgtaACATGAGACGATAAATC------------GATCAAAAACATC--CTTTCGGTGATATCCTGTCTATCCTGTTTCT------TCCTTG-------AATAGTGATAAGGataga----aatcagaaagaaaaacgacggATTTTCGAGAGGAATAGA-AAACTTGC------------------AAT----TCATT---CGCACTCTTCAAATGGAAC-----------TTTCTATCGTGATATTATTCTGG-TGTTcgttattgttttttgatactgTAGCCTACAGTGGTGATAAGAAAACATCAGGA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3623030 283 +  4147112 TTTAAA--CTTGACCGCTCT-TTCATTTCAcgaagaata--aaa------------------tgaaaatcaaaaactgaaaaaatatgtctcAAGACACAGGGATAGAAAACATC--C-------GATATCCAGTCTATCCTGTTTCT------TCTCGG----------AGTGATAAGAATAGA----AAtcagaaagcaaaaaaagagacttcGAGAAggcaaaga-aaacg---------------------aat----tcaTT---CGCACtc-----atgaaac-----------ttttcatcCTGTTACCGTTTTGG-TGTTCACTGCTTACTATTAGGGCTATAGCCTACAGTCCAGATAcgaaaagttcagaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   478392 362 +   823664 I

a score=42755.000000
s ce10.chrX              5340387 47 + 17718866 GAAGAAGACAACGGTTTCTACAAGTTTCTGTCGGATTCTTTTCAGGT
s cb4.chrX              10699669 45 + 21540570 --AGATGACGATGGTTTCTACAAGTTTCTATCAGACTCTTTTCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2119102 47 -  4500979 GAAGAAGACAATGGTTTTTACAAGTTTCTCTCGGACTCTCTCCAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     67246 47 -    90967 GAGGAAGACAACGGTTTCTACAAGTTTTTATCAGATTCTTTTCAGGT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3623313 47 +  4147112 gatgatgataATGGATTTTATAAGTTCCTGTCAGATTCTTTTCAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   478754 47 +   823664 GAAGATGACAGTGGGTATTATAAGTTTCTCCGAGATGCCTTGCAGGT
i caeJap4.Scaffold18194 I 362 I 37

a score=1000.000000
s ce10.chrX              5340434 2 + 17718866 AT
s cb4.chrX              10699714 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2119149 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     67293 2 -    90967 AT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3623360 2 +  4147112 AT
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold18194   478801 37 +   823664 I

a score=546.000000
s ce10.chrX              5340436 1 + 17718866 A
s cb4.chrX              10699716 1 + 21540570 A
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2119151 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold527     67295 1 -    90967 A
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeJap4.Scaffold18194   478801 37 +   823664 I

a score=273.000000
s ce10.chrX              5340437 1 + 17718866 A
s cb4.chrX              10699719 1 + 21540570 A
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold527     67296 1 -    90967 A
i caeSp111.Scaffold527  C 0 I 12
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeJap4.Scaffold18194   478801 37 +   823664 I
e caeRem4.Crem_Contig0   2119152 39 -  4500979 I

a score=182.000000
s ce10.chrX              5340438 2 + 17718866 TA
s cb4.chrX              10699720 2 + 21540570 TA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeJap4.Scaffold18194   478801 37 +   823664 I
e caeSp111.Scaffold527     67297 12 -    90967 I
e caeRem4.Crem_Contig0   2119152 39 -  4500979 I

a score=0.000000
s ce10.chrX              5340440 465 + 17718866 ACTTAAAATAATACTTGAGAGTTTACAAGTTCAAAAAACAATTATTAGATTTACTGTCTCCAATATTATTGTGATTTGGGATCCTCAATACCCGGAATCTCAACTTTTTTCTTGAGGTCCTTGTAAATGCTTAGAAACCATCTTCAAGATCTGTTTCGTAACGTCAATAGTGATGCTTGCCAAAAACTTGCCTTGACTTGCTAAAAACGGGAAAACATTGTTAATATTTAAAACTTATCGATAGCTTTTGTAGCATATTTAACGACATTTTGGAATTGAACTTCTTGAAAACTAGCTTGAAGCTTGTAAATCTAATTTTGAGCTTGATTTACATTCTTGTTGTACATACAATTTTTTGCATTTTGATAGTTTTGTCCTAATGCTCTAGGTAAAATGTCAGATTGGTAGGTGGAAAAAAGTTGAGTTTTTTTTTAATTAAAAAATGGCATAACTCGGCCTTTAACT
e caePb3.Scfld02_0       3623362  40 +  4147112 I
e caeJap4.Scaffold18194   478801  37 +   823664 I
e cb4.chrX              10699722   0 + 21540570 C
e caeSp111.Scaffold527     67297  12 -    90967 I
e caeRem4.Crem_Contig0   2119152  39 -  4500979 I

a score=-54.000000
s ce10.chrX              5340905 10 + 17718866 AACTCACAAT-
s cb4.chrX              10699722 11 + 21540570 AAGTTCCAATG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeJap4.Scaffold18194   478801 37 +   823664 I
e caeSp111.Scaffold527     67297 12 -    90967 I
e caeRem4.Crem_Contig0   2119152 39 -  4500979 I

a score=1420.000000
s ce10.chrX              5340915 17 + 17718866 TTTTTAGTAACT-------AAAAG
s cb4.chrX              10699733 21 + 21540570 TCTTTTGTAGCt---atagaaaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     67309 24 -    90967 TTTCTAATAActaagagagaaaag
i caeSp111.Scaffold527  I 12 C 0
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeJap4.Scaffold18194   478801 37 +   823664 I
e caeRem4.Crem_Contig0   2119152 39 -  4500979 I

a score=-3305.000000
s ce10.chrX              5340932 4 + 17718866 T------TTA
s cb4.chrX              10699754 1 + 21540570 t---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     67333 7 -    90967 taatttt---
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   478838 4 +   823664 ---TTTC---
i caeJap4.Scaffold18194 I 37 C 0
e caePb3.Scfld02_0       3623362 40 +  4147112 I
e caeRem4.Crem_Contig0   2119152 39 -  4500979 I

a score=63730.000000
s ce10.chrX              5340936 110 + 17718866 CAGAAAGATGAAGAAATTCGCCGGGC------TCCCCTTCCAAAAGAACGGAACAAAGTTAAGAATGAGCACGAGCCAGTGAAACTGGCGGATACAGTTCAATTACCAGGTTGATA-
s cb4.chrX              10699755 108 + 21540570 cagaaagatgAAGAAATCCGTCGAGCTCCACCTCCACCGCCAAAGGAACGTAACAAA---CCGAAAGAATATGAGCCAGCTAAGCTAGCAGATATAGTTCAACTACCAGgt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2119191 116 -  4500979 cagaaagatgaagaaattcGCCGTGCCCCTGAAGTTTTACCAAAAGAACGGAACAAACCTCCAAAAGAACATGAACCCGTGAAACTTGCGGATATAGTTCAGTTGCCAGGTAGAAA-
i caeRem4.Crem_Contig0  I 39 I 3
s caeSp111.Scaffold527     67340 110 -    90967 cagaaagatgaagaaactAGGCGAGC------TCCACTTCCAAAACAACGGAACAAGGTTCAAACAGAACGTGAACCAGTCAAACTAGCCGATATTGTTCAGCTACCTGGTACGAT-
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3623402 116 +  4147112 cagaaagatgaagaaattcGACGAGCTCCTCTTCCACTcccaaaagaaagaaatactcctccaaaagaaaaagaagcaaacaaaCTCGCTGATATAGTGCAGTTACCTGGTATTTA-
i caePb3.Scfld02_0      I 40 I 38
s caeJap4.Scaffold18194   478842 114 +   823664 TAGAAAGATGAAGAATTTCACCAAACTACTCCTGTTGCCACAAAAGAACGCAACAAG---CCAGCAGAAAGAGAACCCCTGAAATTGGCGGACACAGTTCAACTGCCTGGTATGACa
i caeJap4.Scaffold18194 C 0 C 0

a score=-8622.000000
s ce10.chrX              5341046 27 + 17718866 ------CAC----AATTACGCACCTCTTACTATCGCT------
s cb4.chrX              10699863 17 + 21540570 --------------------aattttccgttttcatt------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2119310 27 -  4500979 ------CAA----AAGTTGgaatttaatgtttcaaat------
i caeRem4.Crem_Contig0  I 3 I 1
s caeSp111.Scaffold527     67451 21 -    90967 ----------------TCAATAATAATCGCTctcaat------
i caeSp111.Scaffold527  I 1 I 3
s caeJap4.Scaffold18194   478956 43 +   823664 aaaaaaCACTATAAATTTCAGAATAgtcattttttatttggaT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3623518 38 +  4147112 I

a score=200699.000000
s ce10.chrX              5341073 252 + 17718866 ----------ATATTCAGGTGGCTACAATCCTCTTCCTGGAAGAACTTCCTTTGGTGATTACTGGCCTCTAATGCCCATGTCAAACCAATATCATGCAGCGGTGACCTATGATACCTCAAAAGGAAGGGTAGGATTAGGATCTG----------------TGACG-------------------ATATTGAAAAAACTGCGAAGTTTCAGCATGTTGGCGGAGATATACTTATTCCCGTTCCATATTGGAATAATTTTTTAAACATCGGAGGACATTACATCGAACGTTTCCAGGTC
s cb4.chrX              10699894 275 + 21540570 ----------AGTTTTAGGAGGCTATAACCCGCTTCCCGGTCGAACATCATTCGGTGACTACTGGCCACTCATGCCGATGTCCAACCAATATCACGCAGCGGTGACCTATGATACGTCAAAAGGAAGGGTATGATGAGTGTGTCAATTAAC-GACATTACCGATGTGAGAGATAGATT-----TATatattatgattt------ttcaagcACGTCGGCGGTGACATCCTTGTTCCTGTTCCTTAttggaacaattttttgaacatcggAGGACACTACATCGAACGTTTTCAGGTA
i cb4.chrX              I 14 I 3
s caeRem4.Crem_Contig0   2119338 253 -  4500979 -----------attccagGAGGTTACAATCCACTTCCCGGCAGGACGTCTTTTGGAGACTACTGGCCTCTTATGCCTATGTCAAACCAATATCATGCTGCGGTGACCTATGATACGTCAAAAGGAAGAGTAGGGTTTCTGTATCGGGTG------------GATGAGGG---------------ATATATGAAAAGTT------TTCTAGCACGTCGGCGGTGACATCCTTGTTCCTGTTCCTTATTGGAATAACTTTCTGAACATTGGAGGACATTACATCGAACGTTTCcaggtt
i caeRem4.Crem_Contig0  I 1 I 2
s caeSp111.Scaffold527     67475 249 -    90967 ----------attttcaggtgGTTACAATCCATTACCCGGTAGAACATCGTTTGGTGACTACTGGCCTCTAATGCCTATGTCAAACCAATACCATGCAGCGGTGACCTACGATACGTCAAAAGGAAGGGTAGGTTCTTTATCTT----------------CGATGAGGAACACGG---------ATA-------AATT------TTCTAGCACGTCGGCGGCGACATTCTTGTTCCTGTTCCCTATTggaataactttttgaacatCGGTGGTCACTACATTGAACGTTTTCAGGTT
i caeSp111.Scaffold527  I 3 I 3
s caePb3.Scfld02_0       3623556 253 +  4147112 ----------ATTTTCAGGAGGTTATAATCCACTTCCCGGCAGAACATCCTACGGAGACTATTGGCCTCTTATGCCGATGTCGAACCAATATCATGCAGCGGTGACCTATGATACATCGAAAGGAAGGGTATGTTCTCTGTTCCGG--------------AGATGAAGAAAACGG---------ATATC-----TATT------TTCTAGCACGTCGGCGGAGATATTCTTGTTCCTGTTCCCTATtggaataactttttgaacattggtGGACATTACATCGAGCGTTTTCAGGTT
i caePb3.Scfld02_0      I 38 I 36
s caeJap4.Scaffold18194   478999 289 +   823664 ATATTCATTGTATTTCAGGAGGCTATAATCCGCTGCCCGGCAGAACATCCTTTGGAGACTACTGGCCTCTAATGCCCATGTCAAACCAATATCATGCAGGAGTGACCTACGATACGTCGTTAGGAAGGGTaggtttattattttttcagtcagaAACTACATATATAGTAAACAGTTTAAACAAACAAGAAAACAATA------ATTCAGCACGTCGGAGGAGATATTCTTGTTCCTATTCCATACTGGAACAATTTCTTGAACATTGGCGGACATTACATCGAACGCTTCCAGG--
i caeJap4.Scaffold18194 C 0 C 0

a score=-2394.000000
s ce10.chrX              5341325 11 + 17718866 ACCAGTTTCCT
s cb4.chrX              10700172 11 + 21540570 AGAAAATCtca
i cb4.chrX              I 3 I 9
s caeRem4.Crem_Contig0   2119593  9 -  4500979 --gaattttaa
i caeRem4.Crem_Contig0  I 2 I 13
s caeSp111.Scaffold527     67727 11 -    90967 AGCAATTCTAT
i caeSp111.Scaffold527  I 3 I 9
s caeJap4.Scaffold18194   479288  1 +   823664 ------T----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3623809 36 +  4147112 I

a score=98284.000000
s ce10.chrX              5341336 140 + 17718866 TTCAACTAAAGTTAATATGTGT--------------------TGTTCAGGAAGAATGGGTTAAAGTCGGGTACATTAATAGCCCAGTTAACATGCTCGGACTTACAAAGGACCAAATAGCAAGACTACTCTCAGATCCATCACTGCATTATAATAGACGT
s cb4.chrX              10700192 128 + 21540570 tttaac---aGC-------AGT----------------------TTCAGGAAGAATGGGTCAAAGTCGGATATGTGAACAGTCCAGTTAACATGTTAGGACTAACCAAAGAACAAATTACTAGACTTCTTTCAGATCCATCACTTCATTATAATAGACGT
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2119615 129 -  4500979 TATAA----AGT-------TGT--------------------GATTTAGGAAGAATGGGTAAAAGTGGGATATGTGAACAGTCCAGTCAACATGCTTGGTTTAACAAAGGAACAAATCACTCGACTACTGTCAGACCCATCATTGAACTATAATAGACGT
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold527     67747 129 -    90967 TTCAATCAAAG-------------------------------TTTTTAGGAAGAATGGCTAAAAGTGGGATACGTGAATAGTCCAGTGAATATGCTTGGATTaacaaaagaacaaataACACGGCTTCTTTCAGACCCGTCATTACACTGGAATCGACGT
i caeSp111.Scaffold527  I 9 C 0
s caePb3.Scfld02_0       3623845 133 +  4147112 ttcaacaaaaac-------caT--------------------TATTCAGGAAGAATGGGTGAAAGTTGGGTACGTCAACAGTCCTGTCAACATGCTTGGCCTGACAAAGGAACAAATTACTCGACTACTTTCAGACCCGTCATTGCAATATAATAGACGT
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18194   479289 153 +   823664 TTGAATTAAATT-------TGTGTGATATCTCGCAAAAATAACCTTTAGGAAGAATGGGTAAAAGTTGGTTATGTGAACAGTCCGGTTAACATGCTCGGATTAACAAAGGATCAAATTGCACGTCTCATGTCGGATCCATCTCTGCATTACAATAGACGT
i caeJap4.Scaffold18194 C 0 I 37

a score=964.000000
s ce10.chrX              5341476 2 + 17718866 AA
s cb4.chrX              10700320 2 + 21540570 AA
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2119744 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold527     67876 2 -    90967 AT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3623978 2 +  4147112 Aa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   479442 37 +   823664 I

a score=-1866.000000
s ce10.chrX              5341478 2 + 17718866 GC-
s caeRem4.Crem_Contig0   2119748 2 -  4500979 -TT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold527     67878 2 -    90967 -TT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3623980 2 +  4147112 -aa
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold18194   479442 37 +   823664 I
e cb4.chrX              10700322 27 + 21540570 I

a score=-1981.000000
s ce10.chrX              5341480 30 + 17718866 ---TACTGTCGTGTAACCTTTCTAATAGCTAGC----
s caeRem4.Crem_Contig0   2119750 28 -  4500979 ---TATTG----TTGTATTGTTTTATA--AAACAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     67880 31 -    90967 TATGATTAacatttgctttttttcatt--taat----
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3623982 33 +  4147112 I
e caeJap4.Scaffold18194   479442 37 +   823664 I
e cb4.chrX              10700322 27 + 21540570 I

a score=-1230.000000
s ce10.chrX              5341510 4 + 17718866 TTAT
s cb4.chrX              10700349 4 + 21540570 ttga
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   2119778 1 -  4500979 ---T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     67911 2 -    90967 tt--
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3623982 33 +  4147112 I
e caeJap4.Scaffold18194   479442 37 +   823664 I

a score=-324.000000
s ce10.chrX              5341514 1 + 17718866 A
s cb4.chrX              10700353 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2119779 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3624015 1 +  4147112 G
i caePb3.Scfld02_0      I 33 C 0
e caeJap4.Scaffold18194   479442 37 +   823664 I
e caeSp111.Scaffold527     67913 0 -    90967 C

a score=162851.000000
s ce10.chrX              5341515 435 + 17718866 TTACAGAAATCCATCCAAAACTACCAGTAGGAGCTCTTCCGCGAGAATACGAGCCAATAGCCTGTAAGCCTCCATTATGTAACCCGTATCAAGGAACTCTTGGAGTTGGGGTAAGTTGGAGTCAATTGTTTAAGATGCAGTACCGAAACTTAAGtattcgttttattacactcgaaatggcccaaaactaccaaatttccttttgagaacattttgaaaattactcagaaaagtaatggcggtttaaaaaaCTAAAAATCTCAGATTTCCGAACTCCATCTTTAAAATCTCTCTGGAATCATTCATCTATTTATGTTT-CAGGTAGAAGCAAATTACCACATAGAGGACGGAGTAGAAGGCGAATTAGATCTGCCCATTCCAATTGGAAAAGACATTGCCTATCGATTCCCACTTTCTGGAAATATTCACTATGGT--------------------
s cb4.chrX              10700354 275 + 21540570 tttcagaaattcacccCAAGCTACCAGTTGGTGCATTACCAAGAGAATATGAGCCAATTTCTTGCAAACCACCGCTGTGTAATCCTTACCAAGGAACTCTAGGTGTCGGggtaaatat------------------------------------tttt----------------------------------------------tgagaggATATGC----------------------------------------------------------tcataaattcatttttac--------------------cGTTT-CAGGTCGAAGCAAATTACCATATTGAAGATGGAGTGGAAGGAGAGCTTGATCTGCCGATACCGGTTGGAAAAGATATTGCCTATCGTTTCCCACTTTCCGGAAACATTCATTATGGT--------------------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2119780 286 -  4500979 TTCCAGAAATTCATCCGAAGCTGCCAGTTGGTGCATTACCAAGAGAGTATGAACCAATTTCTTGCAAGCCACCACTCTGTAATCCATATCAAGGAACTCTTGGAGTAGGAGTGAGTTG------------------------------------TTTTCTT--AATCA----------------------------------GCTAAAACGGTGTCA----------------------------------------------------------TCATGTTTCTAAACTTTC--------------------CGTTTACAGGTTGAAGCAAATTACCACATAGAAGACGGAGTGGAAGGAGAACTTGATTTACCTATTCCACTTGGGAAAGATATTGCCTATCGATTCCCATTATCTGGAAATATACATTATGGT--------------------
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold527     67913 276 -    90967 tctcagaaattcaCCCAAAACTGCCTCTTGGAGCTCTACCACGTGAATATGAGCCGATTTCTTGTAAACCTCCGCTATGTAATCCATATCAAGGTACACTCGGAGTTGGAGTAAGTCT---------------------------------------------CATGACA--------------------------------CGGCACGTGATATGA---------------------------------------------------------CACatgatgaaaatgtttc--------------------------cagGTTGAAGCAAATTACCACATTGAAGATGGAGTGGAAGGGGAACTTGACTTACCAATTCCACTCGGAAAAGACATCGCCTACAGGTTTCCACTTTCAGGAAACATTCACTACGGT--------------------
i caeSp111.Scaffold527  C 0 I 34
s caePb3.Scfld02_0       3624016 291 +  4147112 TTTCAGAAATTCATCCAAAGTTGCCAGTGGGAGCATTACCAAGAGAATACGAACCGATTTCTTGCAAACCTCCGCTTTGCAATCCGTATCAAGGAACCCTAGGCGTCGGAGTAAGTTT------------------------------------GCTTTCTTAAATAAtaat-----------------------ttctagttttcgaATGCTCTGA----------------------------------------------------------AC-TAAAGTACATTTCTT--------------------------CAGGTCGAAGCAAATTACCACATTGAAGACGGAGTGGAAGGGGAACTCGATTTGCCTATCCcacttggaaaaaatatcGCTTATAGATTCCCACTGTCTGGAAACATCCATTATGG---------------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   479479 291 +   823664 tttcagaaattcatCCGAAAATTCCACTTGGAGCATTGCCAAGAGAATACGAGCCAATCTCCTGCAAGCCTCCGCTTTGTAACCCGTATACTGGAACTTTGGGTGTTGGAGTAAGATT------------------------------------TTCT----------------------------------------------TGAaatgtttgaa---------------------------------------------------------------tttttactgTTTG--------------------CGTATTAAGGTGGAAGCTAACTATCACATTGAAGACGGATTTGAAGGAGAACTTGATCTCCCAGTGCCTATTGGAAAAGATATTGCTTACAGGTTTCCACTTTCTGGAAATATTCATTATGGTGAGTCGTTTTTGTGATATTT
i caeJap4.Scaffold18194 I 37 C 0

a score=-9711.000000
s ce10.chrX              5341950 38 + 17718866 CTGGTTGATAGTTTTAAGCCTTT---ATAGTTCATT-------CTACT--
s cb4.chrX              10700632 36 + 21540570 CTTGTTTGGTTTttcaagaatcaaaaaatgtgtatt--------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2120073 31 -  4500979 ctttttcctttttttgacact-----attgttcatt--------------
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0       3624309 34 +  4147112 ATCATACGCAATTCAGA---------ACAATTCATTAGTTAGT-------
i caePb3.Scfld02_0      I 2 I 4
s caeJap4.Scaffold18194   479770 33 +   823664 TTGGAtgctattattattatt-----attattttct------------tt
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     68189 34 -    90967 I

a score=88064.000000
s ce10.chrX              5341988 156 + 17718866 TTCAGATCATGATGACACATCCGTTAACTATGGTCAACATTTGAGTCCTCTTGATCCATTATTTCCCGGTTTTCCGGATGAAAATAAGCCCAATAAGAGAACATTCAAATTTCAAACCACGCAATAAGTCGAATGGAT--------TAATAACAACT-----TTAATAA
s cb4.chrX              10700668 163 + 21540570 tttaGACCATGATGACACTTCCTTTAACTATGGACAGAATCTGAGCCCACTCGATCCGCTTGGTCCTGGATTTCCAgatgaaaagaaaacgaatcCTAGAACTTTCAAGTTCCAGACGTCTCAATAATTATAATCTAATAATTGGATGGT-GTGATT-----CTAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2120104 156 -  4500979 ttcagatcacgACGACACTTCTGTTAACTATGGTCAGAATCTGAGTCCTTTGGATCCGTTAGCACCAGGGTTCCCGGATGAGAAGAAACCTAACAAGAACACTTTTAAATTTCACACTTCTCAATG---ATAATCTCA----TTGCTGAT-AAGTtt-----ctaataa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     68223 160 -    90967 TTCAGATCATGATGACACTTCTTTTAATTATGGACAGAACCTTAGTCCACTTGATCCCCTTGCTCCAGGATTTccagatgaaaagaaagcgAATAAGAATACTTTCAAGTTCCATACAactcaataatttttatattt----tttctgataataatt-----ctaataa
i caeSp111.Scaffold527  I 34 C 0
s caePb3.Scfld02_0       3624347 157 +  4147112 TACAGATCATGACGACACTTCAGTCAATTATGGCCAAAATCTTAGTCCTCTGGATCCACTTGCTCCTGGATTCccagatgagaaaaaagtgaataagaATACTTTCAAGTTTCATACACGTCAataactc---tgttt----tttgtaataattCTG-----CTAATAA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   479803 159 +   823664 ttcagaccACGATGACACTTCCTTCAATTACGGTCAGAATCTGAGTCCACTGGATCCTCTTATTGGTGGTTTTCCAAATGAGAAAAAGACTACTAAAAG-ACTTTAAG----CGTAAACTACAGTA-TGataatgttt----tgaaaattaataattaaaaCCTAATAA
i caeJap4.Scaffold18194 C 0 I 52

a score=1531.000000
s ce10.chrX              5342144 50 + 17718866 T------ATCGTTTAATAAAAGACCATCTGTGTTTTTG-------------------------------CAAACATTCG------------TAAACTTG
s cb4.chrX              10700831 81 + 21540570 G----------TCTAATAAAtcttcttttaaaatttcgtgATA-TGATCAGTGTGCTAAAAA-------AGAACAGAagaaaatacaataaaaaacTGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2120260 78 -  4500979 taataaaac--gTTAATAAATTGTTATTTCTTGTTCTGTTCTT-ATCTCGACCgacaaaaag-------agaacaatAG-----------AAAAACTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     68383 74 -    90967 t------ac--attaataaaatGGTGTTTCtcgttctgtttttcttgtcgacagataaaaat-------tgaacaaaag----------aaaaaactcg
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3624504 81 +  4147112 T------TC--CATAATAAATCGCTGTTTcttgttctgtttttcttctcgactgatgaaaataataaaaagaacaaaag----------gGAAAACTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   479962 52 +   823664 I

a score=173769.000000
s ce10.chrX              5342194 514 + 17718866  
s cb4.chrX              10700912 515 + 21540570  
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   2120338 520 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     68457 521 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3624585 513 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   480014 559 +   823664  
i caeJap4.Scaffold18194 I 52 C 0

a score=-11420.000000
s ce10.chrX              5342708 31 + 17718866 CTCACAGACAGGAAAA---------------CAAACACTTTTTATA
s caeRem4.Crem_Contig0   2120858 24 -  4500979 ---ACA---ATCTGAA---------------CAATCACT-GTAGTT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold527     68978 21 -    90967 ----------TCAAAA---------------GGATGCTTAGTATTC
i caeSp111.Scaffold527  C 0 I 3
s caePb3.Scfld02_0       3625098 36 +  4147112 ----------CCAATacatctttttcagtttcactccCTTGTAATA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   480573 20 +   823664 --------CTCCTAAA---------------GATGtattcata---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10701427 31 + 21540570 I

a score=1915.000000
s ce10.chrX              5342739 44 + 17718866 TT-GTAATA---------ATTGTTTGTATCATTGAAAT--ACTAA---------TAATAATAATA
s cb4.chrX              10701458 42 + 21540570 tt-gtaataataatgtgaataat-----------aaat--attaa---------taatCATATTA
i cb4.chrX              I 31 I 784
s caeRem4.Crem_Contig0   2120888 45 -  4500979 TT-GTCATA------TGAATTGT-----------atgt--attgatttttttgtttgtaatatta
i caeRem4.Crem_Contig0  I 6 I 3
s caeSp111.Scaffold527     69002 28 -    90967 TT-GTAATA---------ATTGT-----------AAAT----------------TTAAATTAATA
i caeSp111.Scaffold527  I 3 C 0
s caePb3.Scfld02_0       3625137 36 +  4147112 TTAATAATT---------CTTGT-----------ATATCTAATAa---------ctaaaataata
i caePb3.Scfld02_0      I 3 I 1526
s caeJap4.Scaffold18194   480593 31 +   823664 ---ttcata---------ataat-----------acat--agtaa---------taacaataata
i caeJap4.Scaffold18194 C 0 C 0

a score=546.000000
s ce10.chrX              5342783 1 + 17718866 A
s caeRem4.Crem_Contig0   2120936 1 -  4500979 a
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold527     69030 1 -    90967 A
i caeSp111.Scaffold527  C 0 C 0
s caeJap4.Scaffold18194   480624 1 +   823664 a
i caeJap4.Scaffold18194 C 0 I 1193
e caePb3.Scfld02_0       3625173 1526 +  4147112 I
e cb4.chrX              10701500 784 + 21540570 I

a score=-1771.000000
s ce10.chrX              5342784 25 + 17718866 GTCGTTAT--AATAAATACGTTTTTTT--
s caeRem4.Crem_Contig0   2120937 26 -  4500979 tttattttgaaataa-tacaAATAATA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     69031 24 -    90967 CTCATAT---AATAA--ACgtatactttt
i caeSp111.Scaffold527  C 0 I 550
e caePb3.Scfld02_0       3625173 1526 +  4147112 I
e caeJap4.Scaffold18194   480625 1193 +   823664 I
e cb4.chrX              10701500 784 + 21540570 I

a score=608.000000
s ce10.chrX              5342809 30 + 17718866 GTGAA---------ATTGCTAGAATTTAACTTGTTAAAA
s caeRem4.Crem_Contig0   2120963 39 -  4500979 ATGAAGTTATGCCTATTCTtacatttttgtttgttgaaa
i caeRem4.Crem_Contig0  C 0 I 695
e caePb3.Scfld02_0       3625173 1526 +  4147112 I
e caeJap4.Scaffold18194   480625 1193 +   823664 I
e cb4.chrX              10701500 784 + 21540570 I
e caeSp111.Scaffold527     69055 550 -    90967 I

a score=0.000000
s ce10.chrX              5342839 1139 + 17718866  
e caePb3.Scfld02_0       3625173 1526 +  4147112 I
e caeJap4.Scaffold18194   480625 1193 +   823664 I
e cb4.chrX              10701500  784 + 21540570 I
e caeSp111.Scaffold527     69055  550 -    90967 I
e caeRem4.Crem_Contig0   2121002  695 -  4500979 I

a score=48.000000
s ce10.chrX              5343978 24 + 17718866 ATGTTTCTAATCGTATCTCAAT-AC
s caeSp111.Scaffold527     69605 25 -    90967 ACATCTCACACCATACCTTAACCGG
i caeSp111.Scaffold527  I 550 C 0
e caePb3.Scfld02_0       3625173 1526 +  4147112 I
e caeJap4.Scaffold18194   480625 1193 +   823664 I
e cb4.chrX              10701500 784 + 21540570 I
e caeRem4.Crem_Contig0   2121002 695 -  4500979 I

a score=8469.000000
s ce10.chrX              5344002 26 + 17718866 AGAAAACAGTGTTCTCAGTACC-TGCG
s caeRem4.Crem_Contig0   2121697 26 -  4500979 AGTAAATAGTGTTC-CAATTCCTTGCG
i caeRem4.Crem_Contig0  I 695 C 0
s caeSp111.Scaffold527     69630 25 -    90967 AGAAAACAGTGTTC-CAATTTC-CGCG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3626699 25 +  4147112 AGAAAACAGTGTTC-CAATTCT-TGCG
i caePb3.Scfld02_0      I 1526 C 0
e caeJap4.Scaffold18194   480625 1193 +   823664 I
e cb4.chrX              10701500 784 + 21540570 I

a score=104885.000000
s ce10.chrX              5344028 235 + 17718866 CGTAT-CCGATCAAACAACC------AACCGAGTGCCC--AACACTCTCACTGTATATAGGT----GGACACGCAGCAATGGTCAGACA---------------CCAAAAGAGTCTTCCAAATCACACGAGG---------AGAGGA---------AGTACGCATAGAAACAAAAACATCGAGA---------CACTCGCGCAC-CTCACCTTT------------CCTATTTTTCTTTCAACTTAAGACA----CCGAGTTCCTGG-----AGCTATGGC-----------TTCTCC-----------------------TTTTATTTACCTTTCTGGCATATCA
s cb4.chrX              10702284 328 + 21540570 CGTATCCCGATCAAACAACCAC----AACCGACC-TCC--GACG----CACTGTATTTGGGTAG--AGACACGCAGAAACGGTCAGAGACACAAGTACCTTCTCCCAAAAGAGTCCTCCAAATCACACGGAATAGAGAGGTAGAGAACATTAGTGTGGTGCGCATAGAAACAAAAACATAGAGA-----CCCTCACTTGCGCACTCTCACCTTTTTCCTCATTCCctatatttttctttcaactcAATACAACAGCCAAATTCTCCTCCGAGTCGttttttggattgcttaatttttatttttcgtttcagtccggttttacttacttttCTCGGGAGGCATATCA
i cb4.chrX              I 784 I 29
s caeRem4.Crem_Contig0   2121723 275 -  4500979 CGTAT-CCGATCAAACAACCACC--GGACGGACCGGAC--AACA----CACTGTACATGAAT----AGACACGCAGGTATGGTCAGACA---------------CCAAAAGAGTCTTACAAATCACACGCGGTATAG----AGAGGGCATTAG---GGTGCGcatagaaacaaaaacatagCGA---------CACTCGCGCACCTCCacctttt-----------tatgttttcttttcaacttaagaca----ctggattttcat-cgagttttttgtt-----------ttttttctcttaagGCAAGCCAGtcgtttttctatttgttcAATTGGCATATCA
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold527     69655 260 -    90967 CGTAT-CCGATCAAACAACCACCGGGTACGGAAATAAC--TATA----CACTGTACGTATAT----AGAAACGCAGCAGTGGTCAGACA---------------CCAAAAGAGTCCTCCAAATCACACGCAATAGAG----AGAGGACATTAG---GGTGCGcatagaaacaaaaacatagCGA---------CACTCGCGCAC-ctcaccttt----------tttctattttctctccatCTTAAGACA----CTGGATTCTCta-----ttccttttg-----------tttttttcc---------actGGAT----TTTTATTTACTCTCTTAGTTTATCA
i caeSp111.Scaffold527  C 0 I 1
s caePb3.Scfld02_0       3626724 268 +  4147112 CGTAT-CCGATCAAACAACCACCCGGACGGGAAAGAACTGTATA----CACTGTACATAGAT----AGACACGCAGCAGTGGTCAGACA---------------CCAAAAGAGTCCTTCAAATCACACGCAGTATAG----AGAGGGCATTAG---GGTGCgcatagaaacaaaaacataacGA---------CACTCGCGCAC-CTCACCTTTT------CcgtccatatttttctttcaacttaAGACA----Ctggattttctt-----ttcattgtg-----------TTTTTTG-----------GCCGGTTCCCGTTTTATTTACTCTTCTGGCATATCA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   481818 252 +   823664 CGCAT-CCGATCAAACAACCAC-------------AAC----------CACTATAGATGCATAGAAAGACACGCAGCAATGGTCAGAAA---------------AGGAAAGATTCGACC-AATGATGTGAAGAATAG----AGAGGACAGT-----GGTGCGCatagaaacaaaaacataGAGACGAGACATACACT-GCGCAC-CTTGGTTGTCCGTCGGTCGGCGATTTGGTTGTCGTAGGTT----------CTGGATTCTCGC-----GCCTCTCAT-----------CTCATCTCTCTA-----------------TTGTGACCGCTTTTCTTATATATTT
i caeJap4.Scaffold18194 I 1193 C 0

a score=-8590.000000
s ce10.chrX              5344263 36 + 17718866 -------------------------GAAAAACAGCTGGA------GATTGATATTTTTGTTTTT---GTT
s caeRem4.Crem_Contig0   2122035 27 -  4500979 -------------------------aGAAGATATT------------TTtgcaaagttttcttt------
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold527     69916 30 -    90967 -------------------------GAAAAACAAT------------CTCATACAGTAGCTATCAAC---
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3626993 27 +  4147112 -------------------------CAAAAACAAT------------CTTATATGGTAGccatc------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   482070 61 +   823664 GTACACTCtttttttCTGCCCGCGTCGAAAACAATTAGCTTCACtaatttgcgtttttttt---------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10702612 29 + 21540570 I

a score=1833.000000
s ce10.chrX              5344299 7 + 17718866 TTAATTT
s cb4.chrX              10702641 7 + 21540570 CGAAAGT
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   2122062 7 -  4500979 tcaattt
i caeRem4.Crem_Contig0  C 0 I 61
s caeSp111.Scaffold527     69946 7 -    90967 AGaaatt
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627020 5 +  4147112 --aagtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   482131 7 +   823664 tgaatat
i caeJap4.Scaffold18194 C 0 C 0

a score=422.000000
s ce10.chrX              5344306 1 + 17718866 T
s cb4.chrX              10702648 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     69953 1 -    90967 t
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627025 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   482138 1 +   823664 c
i caeJap4.Scaffold18194 C 0 I 12
e caeRem4.Crem_Contig0   2122069 61 -  4500979 I

a score=2419.000000
s ce10.chrX              5344307 28 + 17718866 TTCTTTGCGGTGTTTAGATTTATTATCA
s cb4.chrX              10702649 28 + 21540570 TTCTTTGAAGTGTCCGAAGTTTTTACTA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     69954 23 -    90967 ctctcta-----tttagaattttttccg
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627026 21 +  4147112 ttttctg-------tgaagttATTTCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   482139 12 +   823664 I
e caeRem4.Crem_Contig0   2122069 61 -  4500979 I

a score=-10231.000000
s ce10.chrX              5344335 66 + 17718866 AACATATTCTCCCATAAGATT--TTGATAGGTGACTACTTTCACAC----AT------GTGACGT-TTACAGCGC----ATCT-----
s cb4.chrX              10702677 65 + 21540570 TTTAAGCG-------AAGGCTGATGAACTTGCAATTACTTTGACACTTTCATCAA---GTGACGTCTTGCG--------ATCT-----
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold527     69977 58 -    90967 tGAAAAGTA------AAGATT--CGATGCGGTGATTAATTTGACAC-TTCAT------GTGACGTTTTG----------ATTT-----
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627047 73 +  4147112 TCATTATT-------GAGATT--TGAACTTGTGATTAATTTGACAC-TTTATCAGATGACAATGTCTTGCAGGGTTACCACTT-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   482151 52 +   823664 -------------------------AACGAGTGATCACATTAA-AT----ATCAG---CTGAC---TTCCAGGTTCTCCGTTTCAGGT
i caeJap4.Scaffold18194 I 12 C 0
e caeRem4.Crem_Contig0   2122069 61 -  4500979 I

a score=-47364.000000
s ce10.chrX              5344401 225 + 17718866 TTGACCGT-ACCAGACAG--AAA--AAAATGATTCATTT-------------TCTTCTGTTTT-----GTCGATTGCATTA----CTTATCTATTCCCCTTGTTA----TGATAC--------CATTTGT---------ACTTTTTCCAATTGTG---GCAAACACAACTTGAA--CAATTTTTG-----------CACGTAATAAAACTATTTCAGAT---------TTTT-TTCAA----TTTTCAAACATTGGT-----GAACATGACTGAACCCAATTCACTTCCACGGAAAGGTATG--T----TTATA
s cb4.chrX              10702745 221 + 21540570 TTTACCAT---CTCTAGA--CAA--GAAATGAttcatttct---------tctcttctcgaCA-----CTAGatcatttca----ttttg------tttttgatacgCTATTTAC--------TTTTTATTGCGGAACATATTTTCATTCTTATTCACTtatatttca--------aagtttttg------------------------aatttcaggc---------tTAG------------CTTTAAC-CTGGTGGACCGTCAACAATGGAACCTAACAAAGAGCCACCCAAAGGTTAGTTTACCTCCGCA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2122130 236 -  4500979 TTTACCgt---cttgaaaagaaa--aaaaagatttgtctATGG-aatctatctcttttttttt-----gcgtaTCATC-------ATTAG------TCTTAGATACAGTTCTTTCTCAATTCGttcttat---------tcttctcattCGTGTT---TGATATTCGATATG----AACTACTCGGGTG---------------ATCATATTTTTAGAC---------TTTG-----------TCCCCAAC-TTGGTCTGCGAGCCGTGATGGATTCAAACAATGAAGCGCAAAAAGGTGAG--TGGTGCTGTG
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold527     70035 230 -    90967 CTAACCAAAAtcagaaca--aaa--act----tttctctttct---------ctttttcttct----cgcgtatcaattcgatttcctgt------tttttgtta--------------------CTTAC---------TCGTcaacctattttt--ctcttatctcaAACGGAACGAACTTTCGAAACATATAATCCATTAACACTTTGTTTTTAGATCAAC-----TATT-----------CTTCAAAC-TTGGC-----GATAATGACCGATCCAAACGTCGAACCCCAGAAAGGT--A--TGAATCAGGC
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627120 230 +  4147112 CAGACAGA---CAGTACA--GAG--AATGTGATTCATCCTTTTGAAtgtgtctcttttcttct----cgcCTATCAATTCA----CCTG-------TTTTTGTTG----TCCAAC--------GTCTCAT---------TCgttttcttattatt---tcttattcaaaactaTACTAGttcttg-------------------ttcttgatttcagatCAACCTCTGTTTG-----------ATTCAAAC-TTGGT-----GGGAATGAGTGAACCAAATGCCGGATCCCAGAAAGGTTAG--TGAAGCCTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   482203 222 +   823664 TTGGTTGC---CAAGGAC--ACATTggagtgattttttttcct---------tccttttttctcgctcgtttttcatgcct----cttctccctt-tctATGTTG----TCCTAC--------tttgtat---------tgttttgacatttata-tattttgtttca-----------ttttct-------------------aatatattttcagag---------ttgtattcAAATACTCATCAAAC-TTGTT-----TGTGATGACTGAACCAAACTCGGAGCCATCAAAAGGTACG--TACATA----
i caeJap4.Scaffold18194 C 0 I 4908

a score=-51414.000000
s ce10.chrX              5344626 349 + 17718866 AAATA-GCACA---TGTGTGCATTAGTACGTCATGGTGTTTGCACCATTAGTGTATTTTCTGAGCTCAACTATTCAGA-GCTTGCTAATTTTCTGCAAGCTTTGACTAGTTTTGAGAAGTTTGTTCTGCTTAAACTAATACtattaattatttatttaaaaaa---aatCTTAAAG-CAGGTTTTTT-----------------------TTGAATGTTA---------TAATTATTTATAA--TTGCAGAATGGGA--------------GAAATTCGACGAAATTTCACT------------------AAAACAAGTCAGCATCAATGACGAAGAGCAAAC------TACTGGAATCACTACTGGAAAGAATCAA-------------TCAGAAACAAATGAAGAAA-----------------------TCGATTTAAA-AACTGAAGAACTACATGATCCATT
s cb4.chrX              10702966 414 + 21540570 GGAC--GCAAA---TGTGTGCATTGTTGCGTCGCGGTGTTTGCACCGTC---------------CTCCTCCGTATTCA-CTTCAGCCACTACTTATAA--TTATCTAATTTTGG-----------CACTTTAAAAGAAAAGTTCTATCAAATCTTgcttaaaa---atgtttgaaataatatttttcacttacagaatgggaaaaattcgacgaattgTCTTTAAATGGTGTGAAAATCTCGGTTGTCAATGAAGAATCGACCACTAAGCCAAAATCGGAAGAGAAATCGATCGTATCGTCACCAAAAGCTCACGGAGTGGAAAAGCCCAATGAGGA------------GGTGGAGGACAATGTGCCAAAAACTGGGAAAACCACC----GAAGTGAAAGAAGCGGATGACAAGATTGAGGAGGTCCATGTTCCAAGGACAACGGAGAAAGAAATCCCGAATCCACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2122366 389 -  4500979 TGACG-GCATT---TCTGTGCATTGTTTCGGCGCGGTGTTTGCACCAt-----------------tgcattttatttt-tctcgcTAACTCTGTAAAA--CTTCATTAAATTCG-----------CTTTTTAAAATGATTATACAATACAATTTCatgcaaaa---ataaattaaa-aatgttcttc-----------------aatttttcttattttgtttac----tgtcaatttcataattttcagaatggga--------------GAAATTCGACGAGGTTTCGATGGAAGAATTCTCAATTGCGAACAAAGTGGAATctccaaaagaagaagaaccaaGCAGGGTaaagaaggatg----aaaaagttgaaatcccttcggtagatgataaaaaagaagaaaagaagacaaatgaggagaaagaaaaaaagaaagagaataaagaaaCAGCGGATCCACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     70265 310 -    90967 AGGCA-ATGAAGAGAGTCTGCATTATTGCGTCGTGGTGTTTGCACCAGA---------------CCTTTCATTTTTGc-ctttctcatctttttaata---------------------------taattaaaaatgg------aattttttcttgctcaaAACTGGTTTTTTATA-GTTATacatt-----------------ggttttttgtttatta---------aaataaatattta--ttccaGGATGGGA--------------AAAGTTCGACGAAGTTTCTCT------------------AAAGCAAGTAACAATTACCGACGAGGAGGaatc------tccaaaaaacaaagaaccAATGGCTAAA-------------GAAGAGTCAAAAGCAA--------------------------CTAATGTGAA-GGAAGAAAACATTCAAGATCCTCT
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627350 310 +  4147112 TAGCA-ACTCA---AGTGTGCAACTGCGCGTCTCGGTGTATACATC--------------------------TTTTGCGCGtcgtcatttttct-------------------------------ttattaaTAATAGT-----AAACATCCCATTGGGAAAACCGCTATTTTGgc-ttcattttca-----------------agtttatcCATTGCTC---------TGATGATagctta-ttttcagaatggga--------------aaaattcgACGATGTTTCTCT------------------TCACAATGTAAAAATCACCGACGAGGaggaaac------tccaaaaaatgatggatcGCAGACGGAAATCAAatcc----gaagagaaaaaagaaagca---------------------ctCCAATCAAAACACAACAGGAAATGAACGATCCTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   487333 310 +   823664 AAATATGCATT---TGTGTGTATTTCTGCGTTGTTGTGTTTGCACACAG-------------------------TGCC-GGTCAGAATCTATTTTGAACAGTTAAATAAATTGGCACAAACA---TGTTTTTAACTTGTTTTGCTGCAAAAATATTGCGac-----gcttttaatt-tttattatcG-----------------TGTGAGTCAATTCTTTATTAC----tcattaaatattt--ttgcagAATGGGA--------------GCGATTCGAAGAAATATCCTT------------------AAAAAACGTGAGCATTGTCGACGAGCAGAAGAA------TTCTGCAGAGAATG----AAAGCGACGA-------------GAAGGTGgaaaa-----------------------------------------agtggaagaaccacaccatccgtt
i caeJap4.Scaffold18194 I 4908 I 754

a score=-1271.000000
s ce10.chrX              5344975 10 + 17718866 GC-------AGTCAGAA
s cb4.chrX              10703380 17 + 21540570 CCgtatgaaaatcaaaa
i cb4.chrX              C 0 I 305
s caeRem4.Crem_Contig0   2122755 10 -  4500979 TC-------AGTCGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     70575 10 -    90967 TC-------AAAACAAT
i caeSp111.Scaffold527  C 0 I 9
s caePb3.Scfld02_0       3627660 10 +  4147112 AC-------AGAAAGAT
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194   487643 754 +   823664 I

a score=-1366.000000
s ce10.chrX              5344985 175 + 17718866 ---TCCTCAGCTGCTGAGACAGATGTTCCACCCACCACACAGCCAGCAAAACAGCAGTCTCCTACA-TTTGAACCGCGGTAATATTATTGATTAATTGTGCTGCGA-CAATACATGTTCTCTTCAGAGCTACACAAATCGCATC---ACCAT---TTCCAGTGTTTCCAATTGCACCAAAGAAACC
s caeRem4.Crem_Contig0   2122765 133 -  4500979 TCtgattcagaagatgaaatAAGTGTTCCATCTTCTGCA---GAAACAAAACCTCAAACT---GCA-TATGAACCTAGGTCAGATTATTGTTTAATTTT-GTACAAGcaatacata---ttttcagaattgcgaCGATTTCGCC------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     70594 149 -    90967 ---CATTCTGACACAGAGACGAAACCATCGTCTCCAGGA---CCTGAAAAGCCA---------ACA-TACGAGACAAGGTAAGATTATCGATCTTTGCT---ACGAGCATTAATTG---TTTGCAGGTCACCACCCATTTCACCAGTACCATGTATGCCA---------ATTATC------AAACC
i caeSp111.Scaffold527  I 9 C 0
s caePb3.Scfld02_0       3627673 171 +  4147112 ---gattctgatgaagaaATTGAGGTGCCACCTCCCTCC---CCGCAGAAACCGTCCGCCGC-ACATTACGAGCCGAGGTAAGCCTATTGATTGTGACCCGAACGCGCACTAATTGT--TTTATAGGACACTACCCGTTGCACCGGTTCCTTGTATGCCAGTGGCCCCGATTGCC------AAGCC
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194   487643 754 +   823664 I
e cb4.chrX              10703397 305 + 21540570 I

a score=-19837.000000
s ce10.chrX              5345160 102 + 17718866 GAAACCTCTGTCACCTCAAAATACACAGACTTTTCTGGGTGAGttttttt----------------aaaattaaaatttttattaCAATTATGTTGCTCAAAAATAtgccgtatttcc
s cb4.chrX              10703702 113 + 21540570 GAGACCTC-----CTGCTGCGGCAGCATACGAACCTAGGTgagattatcgatttttcattgGCGGAGGAATTAACATGGTTTTTAGAACTGCTCCAATTGCGCCTGTGCCATGCATGC
i cb4.chrX              I 305 I 241
s caeRem4.Crem_Contig0   2122898  14 -  4500979 --------------------------------------------------------------------------------------------------------TGTTGCATGCATGC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold527     70743  47 -    90967 ---------------------GAAGCCGATCTTTTTGAGTAAGTCTTTTT----------------------------------------gctaaaatttgaaatttg----------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627844  45 +  4147112 ---------------------AAAGCCAATCTACTTGGGTAAGGGTTTTT------------------------------------------TATAATTGGACTTTTT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   487643 754 +   823664 I

a score=-30342.000000
s ce10.chrX              5345262 237 + 17718866 tctactagtattgctccccagtacttcatctcaaaaagttatgattctggtaatatttaagataaaataagtaattgaatcaaaagtgctatataactatgaaacgttctgtcagttgacaattttttaattgaaaaaaaaacacgacaactgataaattgtttcaaatttaaatgatggagtgcaaaactaggagaggaaatacATACGATAGTTGTAAAATAGTTTTTAAAAGTT
s caeRem4.Crem_Contig0   2122913  84 -  4500979 ---------------------------------------------------AATAGTTAAAACAAAA--------------------------------------GCTCCAATACCT-------------TTG-------------------GGTAAGTTCTT---AAT---AGTGCCAGAA----ACACT-------GAAGGACATTTTCCATTTG----------TTTAA-----
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold527     70790   8 -    90967 ----------------------------------------------------------------------------------------------------------tttcaGCA---------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627889  27 +  4147112 ----------------------------------------------------------------------------------------------------------CTCCatcaa---------------------------------------------------------aatgacaaaa-----------------aatgacac------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   487643 754 +   823664 I
e cb4.chrX              10703815 241 + 21540570 I

a score=-6222.000000
s ce10.chrX              5345499 32 + 17718866 ATGCAGAAAAAAACGTACTCTTAAAAATGTCC-----------
s cb4.chrX              10704056 38 + 21540570 ATCGAGTAAAAAATG-----CTGCCTATTTGAATTCTATGTTT
i cb4.chrX              I 241 C 0
s caeSp111.Scaffold527     70798 10 -    90967 -------------------------TATTTTGCGT--------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3627916 13 +  4147112 ----------------------acgtatttcaatt--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   487643 754 +   823664 I
e caeRem4.Crem_Contig0   2122997  0 -  4500979 C

a score=130069.000000
s ce10.chrX              5345531 199 + 17718866 TTTCAGACGTGTCAAAACTGGAAGAAGGAAC------TCCGAGAATCGCAAAATCCAGTGCAATCTCGGACCCAAAAAATGTGAATGCAAAAGTTTTGGCAACGGTTTACCCCGACAATGTCATCTGTGATTGGCTCACACCTCCACACTATGACGCTTACAGCATGCCGTCCATTTTGGCAATTGACGTTCCAACGGT--AATTTT
s cb4.chrX              10704094 205 + 21540570 TTACAGATGTGAATCGCTTGGAAGAGGATGATGGTACACCACGCTACGCAAAATCAAGTGTCCTTGTTAACCCAACTCATGTCAATGGAAAAGTTCTGGCCACTGTCTACCCGGATAACATCATTTGTGACTGGATTGTTCCACCACATTATGATGCTCTCAGCATGCCGTCAATTTTGGCTATCGATGTTCCAGCTgt--aagatt
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2122997 199 -  4500979 TTTCAGACGTGAGTCGATTGGAAGAAGGCGG------GCCAAAAATAGCGAAATCCAGTGTCATCTCCGatccaaaaaatgtgaatgcGAAGGTTCTTGCAACGGTTTTTCCGGATAATGTTGTCTGCGACTGGGTCACTCCTCCACACTACGATGCTTATAGTATGCCATCCATTCTGGCTATCGATATACCAACagt--aagaat
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold527     70808 198 -    90967 TT-CAGATGTGAACAGACTTGAAGAAGGTGT------ACAAAGAATTGCAAAAGCAAGTGTCATCTCGGACCCTCAAAACGTGAATGGCAAAGTATTGGCGACGGTTTTTCCAGACAATCTTGTCTGTGATTGGGTCACTCCGCCACATTATGACGCTTACAGCATGCCATCGATTCTGGCAATTGACGTTCCAACAGT--GAGGAT
i caeSp111.Scaffold527  C 0 I 31
s caePb3.Scfld02_0       3627929 201 +  4147112 ttgtagaTGTTTGCAAACTCGAAGATGGAGT------GCCGGGTATACCAAGAGCCAGTGTCATCTCCGACCCAAAGAATGTCAATGGAAAGATTCTGGCCACTGTGTTCCCAGACAACATTATCTGTGATTGGATAACTCCACCAACTTATGATCCTGAGGAAATGCCATCGATATTGGCCATTGATATACCAACGGTAAAAGAAT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   488397 199 +   823664 TTTCAGATgttgaaaaactggaaaaaggcTC------AACAAAACCGGCAAAAGCCAGCGCAATCGCCGATCCAACAGCTGTGAATGCAAAAGTCCTGGCAACCGTGTACCCGGACAATGTGATTTGCGACTGGGTGACTCCTCCGCATTACGATGCTTACAATATGCCGTCTATTTTAGCGATTGATGTGCCAACGGT--AATTAG
i caeJap4.Scaffold18194 I 754 C 0

a score=-5098.000000
s ce10.chrX              5345730 14 + 17718866 ---------TCCAAGTTTTAAGC
s cb4.chrX              10704312 12 + 21540570 ---------tagaTGATTCTA--
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2123200  9 -  4500979 ---------tgaataatt-----
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       3628133 14 +  4147112 ---------TCGATGAGGTTGGC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   488596 14 +   823664 AGCAGGCCGTAAAT---------
i caeJap4.Scaffold18194 C 0 I 202
e caeSp111.Scaffold527     71006 31 -    90967 I

a score=-3539.000000
s ce10.chrX              5345744 17 + 17718866 TTGAATTTCAAAAAAAA------
s cb4.chrX              10704324 20 + 21540570 ---AACTTTAAATGTAGTATAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2123209 19 -  4500979 ----attaCTGATTTTATCAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3628147 21 +  4147112 GT-GATTCTGGATAAGACTAAA-
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194   488610 202 +   823664 I
e caeSp111.Scaffold527     71006 31 -    90967 I

a score=12791.000000
s ce10.chrX              5345761 77 + 17718866 ATTGAAGTTAACTGGAGAAGACTACATTGCAACCATCAAGGCACTTATTGAAGATAGTCGGTTTAAAATGTGAGTTT
s cb4.chrX              10704344 37 + 21540570 TTATGAGCTTA--GGCTGTAACCCTA----------CAAGACACCCATC----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2123228 77 -  4500979 ATTTCAGCTGAATGGCGATGACTACATTGCGACAATCAAGACAATTGTGGAAGATACTCGATTCAAGATGTGAGCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     71037 77 -    90967 CTTGCAGCTCACTGGAGAAGACTACATAACAACCATAAAAACAATTGTGGAGGATTATAGATTCAAACTGTGAGTTT
i caeSp111.Scaffold527  I 31 C 0
s caePb3.Scfld02_0       3628175 77 +  4147112 TTTGCAGCTCACCGGACAGGACTACGTTCTCACAGTCGACACGATCGTCAAGGATTATAGATTCAGATTGTGAGTTA
i caePb3.Scfld02_0      I 7 I 79
e caeJap4.Scaffold18194   488610 202 +   823664 I

a score=-626.000000
s ce10.chrX              5345838 5 + 17718866 -TTGAA
s caeRem4.Crem_Contig0   2123305 5 -  4500979 -TTGAA
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold527     71114 5 -    90967 ACAGG-
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3628252 79 +  4147112 I
e caeJap4.Scaffold18194   488610 202 +   823664 I
e cb4.chrX              10704381 0 + 21540570 C

a score=-635.000000
s ce10.chrX              5345843 32 + 17718866 TTAAATT-------CTAAAATATCACAAATATTTCCAGA
s cb4.chrX              10704381 25 + 21540570 --AAACTCTAGAAACTCAGACACCAAA------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold527     71119 33 -    90967 TGAACCT------ACTCACTTATCACATCTAGTTCCAGA
i caeSp111.Scaffold527  C 0 C 0
e caePb3.Scfld02_0       3628252 79 +  4147112 I
e caeJap4.Scaffold18194   488610 202 +   823664 I
e caeRem4.Crem_Contig0   2123310 29 -  4500979 I

a score=-879.000000
s ce10.chrX              5345875 67 + 17718866 AAATAGATGAATAAAAAAAATCTGCTTTATATTTAGGAATAGTTTTTTTTTCAACTTTTTGTTAGTT
s cb4.chrX              10704406 25 + 21540570 GAC------AAtagaaaag------------------------------------tgtttttcagtt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3628252 79 +  4147112 I
e caeJap4.Scaffold18194   488610 202 +   823664 I
e caeSp111.Scaffold527     71152  0 -    90967 C
e caeRem4.Crem_Contig0   2123310 29 -  4500979 I

a score=-373.000000
s ce10.chrX              5345942 8 + 17718866 GTTAGTAG
s cb4.chrX              10704431 5 + 21540570 gcCCG---
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   488812 8 +   823664 GTCAGGAG
i caeJap4.Scaffold18194 I 202 C 0
e caePb3.Scfld02_0       3628252 79 +  4147112 I
e caeSp111.Scaffold527     71152 0 -    90967 C
e caeRem4.Crem_Contig0   2123310 29 -  4500979 I

a score=-35123.000000
s ce10.chrX              5345950 197 + 17718866 AAGTCGTTGGCTATATTAAATTAAG------------AAAACAA--------------------------------TTTCTAA------------ATCAGAGGGGTGCCGCTAAAA---TGCCCAGTTTGGCACAATATTATAATTCCA-----AACAATTTTACAAGCAAAAAATTCTACATAACCTTTAGAAA---ATGGGAATTTT-----TAAAATATTTCACTGTGCCAATAAAA-CGTTCCGCACAGTTTTGGT---------TTGAACAAAA
s cb4.chrX              10704436  67 + 21540570 -------------GTCCAGACTACA---------------------------------------------------TCTCCAC-----------TATCCAAA-----------------------------------------------------------CCATTGTCGAAA-----------------------------------------GCAGTCGCTTCA-------AATTG------------------TGAG---------TTACTCA---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3628331 208 +  4147112 AAGCCGACAATTATACCAAACTGTAAA------TGAtaaagcaaaaagaaagttatATGCG----------AAGACTCTCTGCGTT--------CATCTGAA-------TCTGAGa---tgtctcatttttc---ttctcttgacTTTG--------ACTTCCTTTAACTAAAGAGAATACGGGGCAACTAGGAG---TTGGCAACCCTGTTATGAAATTGCTTCA-------AAGGGAA-------GCACGTGTTTCAT---------TTGGTCAAAA
i caePb3.Scfld02_0      I 79 I 74
s caeJap4.Scaffold18194   488820 267 +   823664 CTGATTTTACCCAGATTAAACTCCAAACCAATCTGATTAAACACCAAACAATTTACCAGAGTTGTCGCTTAAAcgctttctgcctcaaaattcgtatcgaaa-------aatgtgaatttgcataaattggcacactacCAAGAtttttttACCGCccagttcaatggagcgcacttcaACGGAACGCCCGGAAATATTTAtcacattatttcccaaaatatcCGA-----CCAATTAGAGCATTCTTGGCATTTTTGAGCGCTGtctctcgaaaaaaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     71152   0 -    90967 C
e caeRem4.Crem_Contig0   2123310  29 -  4500979 I

a score=-10165.000000
s ce10.chrX              5346147  89 + 17718866 -------------AA-------------TAATGTATATATT--------TGCTATTTTA----AATGTT---GATAACGAAAAAATAATTGAGTTAAGTAACCTTAAAAATAATT------------------------------------------AAAATGCTACTACAC
s cb4.chrX              10704503  30 + 21540570 --------------------------------GTATTCATT--------TTCTA------------------------------------AAACTCATTATCCTTG------------------------------------------------------------------
i cb4.chrX              C 0 I 1
s caeJap4.Scaffold18194   489087 171 +   823664 aaacagcgcaAAAAACACCAGCGACTTCCAATACATATATTAGTTGTCATGCTACTCTATTagagtatttacggtaattaaAAAGCAGA-TAGTTAGGtatattttataattttttttttctgcagcTACCGGCCGAAGACTACGTTGCGTGCGTCGAGGCTATAATTACAG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3628539  74 +  4147112 I
e caeSp111.Scaffold527     71152   0 -    90967 C
e caeRem4.Crem_Contig0   2123310  29 -  4500979 I

a score=-3385.000000
s ce10.chrX              5346236 35 + 17718866 ---ACAAATACCAAATAT------------------------ACAATTTGTGATTGTTATTT
s caePb3.Scfld02_0       3628613 32 +  4147112 ---ACTATTTTCAGGTG---------------------------AACTCTCACCTAATATGG
i caePb3.Scfld02_0      I 74 I 3
s caeJap4.Scaffold18194   489258 61 +   823664 ACAGAAGATTTAAAATGTAAGAAACATTTTGTTTAATTATTAACAATTTATAACTCTTTCT-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10704533  1 + 21540570 I
e caeSp111.Scaffold527     71152  0 -    90967 C
e caeRem4.Crem_Contig0   2123310 29 -  4500979 I

a score=1087.000000
s ce10.chrX              5346271 8 + 17718866 TTTCCAGG-
s cb4.chrX              10704534 8 + 21540570 TTCTCAGG-
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2123339 8 -  4500979 ttttcagg-
i caeRem4.Crem_Contig0  I 29 C 0
s caePb3.Scfld02_0       3628648 8 +  4147112 TTTACAGA-
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   489319 8 +   823664 -CAACAAGG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold527     71152 0 -    90967 C

a score=153264.000000
s ce10.chrX              5346279 188 + 17718866 TTTTCCACGATATATTCCCGCCTGATCGCAATATGGATGACATTCTGGATTCTAACCCTAACGATCACTCTTCTTTTCCAATCAAAAGGTGGATGGCCTGTCATGATTTGGTGCCTTGTATGGGCGGTGCTACTTTTTGTTGGAGTGTACGCGTGTGCAATGATAAGAAGAAGGGTATGT--GGCAATGA
s cb4.chrX              10704542 190 + 21540570 TATTCGACGATCTACTCTCGCATCATTGCCATCTGGATGACATTCTGGATCCTTTCGCTCACCgtcactcttcttcttcaatcgCATGGAGGATGGCCTGTTATGATTTGGTGTCTCGTATGGACGGTGCTCCTCTTTGTTGGCATCTACGGTTGTGCAATGATAAGGCGACAGGTGAGTGGGGTAGTGA
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   2123347 188 -  4500979 ttttccaCAATCTACTCTCGACTGATTGCCATCTGGATGACATTCTGGATACTTTCTCTCACAATCACTTTACTTCTCCAATCAAAGGGTGGATGGCCTGTCATGATTTGGTGTCTCGTTTGGGCGGTGCTTCTCTTTGTTGGAATATACGTGTGTGCgatgataagaagaagagtAAGT--GGTGATAA
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold527     71152 187 -    90967 TACTCCACTATCTACGCTCGTCTCATTGCCTTATGGATGGTGTTCTGGATTCTATCACTTGTAGTAACCTTGCTTCTTTCAACAAAAGGAGGATGGCCTGTTATGATTTTCTGCCTCGTTTGGGcagtctttctttttgtaggAATTTACGTGTGTGCAATGATAAGACGAAGAGTAAGT--GTTGATA-
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3628656 187 +  4147112 TTTGCCACAATCTACTCCCGCATCATTGCCATATGGATGACTCTTTGGATTGCTCTTCTGGCTGGAACTCTGCTTCTTCAATCAAAAGGCGGCTGGCCTGTCATGATATGGTGCCTCATTTGGACGGTGCTTCTTTTTGTCGGAATTTACGCGTGTGCAATGATAAGACGAAGAGTGAGT--GGTGATA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   489327 189 +   823664 TTTTCATCAATCTACTCTCGAATGATTGCCATCTGGATGACTCTGTGGATATTCTCGCTTGCAGTAACTCTTCTGCTCCAGTCGAAAGGCGGATGGCCGGTGATGATATGGTGCCTCGTTTGGGCGGTGCTTCTTTTTGTCGGAGTGTACGTGTGCGCAATGATAAGACGACGAGTGAGT-TGGCGATAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-8833.000000
s ce10.chrX              5346467 43 + 17718866 -------------AAAGTTGGGCAGAGAGCATCACTGCTCTGTGTGAAACTTGGGG
s caeRem4.Crem_Contig0   2123550 33 -  4500979 -------------AAAGAAG---------CAGCACGACTCT-TGTGGTAAATGGGG
i caeRem4.Crem_Contig0  I 15 I 2
s caeSp111.Scaffold527     71339 18 -    90967 -------------AAAGTTGTTT------CGACGCAG-------------------
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3628843 15 +  4147112 -------------AAAATGG---------CAGCAAGG-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   489516 38 +   823664 AAacggaggaaaaaaaagagaaaagagaagagCACGGC------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10704732 47 + 21540570 I

a score=241138.000000
s ce10.chrX              5346510 404 + 17718866 GCAAGAGGCAATGCAT--TTTCG-----------------CCTTGCAGATACGGATTGGACTGAACCACGTTGTCGAGAAAGCAAACAAGATAATTGTTGATCGACACTTTCTGACTGGAGTGGAAGATCGCGGACAATTGAGCTGCCACAAAGTTGTGGTAAGATA------------AGAGATCAAAGCAAATTTGAAAAATGCTTAAGGACAATTGTTACTAACTAAGAAAACGCATTTCAGATCCACTTCATCCGATTCAATGTTGGAGAATGTACTGCCGATGTTATCAAACAATTGAAAATCAAAAGCACTGGCGGATGTATATTTGGCGGTAATTCAGA---AGAAGTC------ACCGATGAAAATATTGAAAGAGAAGCCGCATCCTTAATTTTGAAATATAGTCAAGAATATGTGAAAAGTGTTGTGAAGG-TAA
s cb4.chrX              10704779 381 + 21540570 ---ATAACCTTCaatt--ctctt--------------tctttttgcaGATTCGGATCGGACTGAACCATGTTGTCAAGAAGGCAAACAAAATCATTGTTGATCGGCATTTTCTCACTGGAGTGGAGGACCGCGGCCAACTAAGTTGCCATAAAGTTGTTGTAAGA--------------GACCAATAAGTA-----------Ctgatttctctcaaaaa----------------atgatttcagattCACTTCATACGATTCAACGTTTTAGAATGCAGAGCCGATATTATTCGTcaactgaaaatcatcaaaactgGGGGATGCGTCTTTGGA---GGAGCAAACCAACAAGAGGATCCAAATGAAGAGAGTATTGAGAGAGAAGCTGCCGCTTTGATTCTTCAATACAGTCAGGAATACGTCAAAAGTGTTGTTAAGG-TGA
i cb4.chrX              I 47 I 266
s caeRem4.Crem_Contig0   2123585 378 -  4500979 ---AAGAGcgaaacgt--ttttc--------------ttttcttgcaGATACGGATCGGACTGAATCACGTTGTTGAGAAAGCAAATAAGATAATTGTTGATCGACACTTTCTCATTGGAGTGGAGGATCGCGGACAATTGAGTTGCCACAAAACTGTTGTAAGA--------------GGAGAGTAAAGAAACAG------ATGAGCgtattcaatca-------------------atttcagattcactTCATCCGATTCAATGTTGGAGAATGCACAGCAGATGTAATCAAACAGTTGAAGATTCGAAATTCTGGAGGATGTGTATTTGGAGATGGTGCACATCCTGAAGTG------AACGATGAGAGTGTTGAACGGGAAGCCGCTGCTTTGATCTTACAATACAGCCAAGAATATGTGAAGAGCGTTGTTAAGG-T--
i caeRem4.Crem_Contig0  I 2 I 20
s caeSp111.Scaffold527     71357 397 -    90967 --AAATAGGCACACTT--ATTGCTATAAACGAGTTGAGTCTTTTGCAGATACGGATCGCACTGAACCACGTTGTCGAGAAAGCAAATAAGCTCATTGTTGATCGACACTTTCTCACTGGAGTGGAGGATCGAGGACAATTGAGTTGCCACAAAGTTGTGgtgagat-------------agaaaaaagaaacactgAGATCAATGATTAT------------------------CAATCTATCAGATTCATTTCATCCGTTTCAATGTTGGAGAATGCACGGCAGAGGTTAtcaaacaattgaaaattcagaagtcAGGAGGATGTGTCTTCGGAGGAAACGGACAAGAAGAACCG------AATGATGAGAGTATTGAAAGAGAAGCTGCTACTTTGATACTTCAATACAGTCAGGAGTATGTGAAGAGTGTAGTGAAGG-TGG
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3628858 413 +  4147112 --AAGAGgaaacactt--ttcaa------------------tttgcagATACGGATCGGACTGAACCACGTTGTCGAGAAGGCAAACAAGATCGTTGTTGATCGACACTTTCTCACTGGAGTGGAGGATCGAGGGCAATTGAGTTGTCACAAAGTTGTGGTAAGatgataagaa--tgaaaaaaatagagaagcaaaaaacaatgtttgtGGTAAGGCACTCATAA--AAGCTGTATTATTTCAGATTCACTTCATTCGCTTCAACGTCCTAGAATGCACCGCCGAGTTGATCAAGCaactcaaaatcagaaattcaggAGGATGTGTTTTTGGAGGGGCTGCGCAGTCCGAAGCT------AATGATGAGAGTATCGAGAGAGAGGCTGCTGCATTGATACTTGAATACAGTCAAGAATTCGTCAAGAGTGTGGTTAAGGTTAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   489554 381 +   823664 GCGAGAAGCGACAAATGGTTTGG------------------TTTGCAGATACGGATCGGACTGAACCACGTTGTCGAGAAGGCAAACAAGATCATTGTTGACCGACACTTTCTCGCTGGAGTGGAGGATCGCGGCCAATTGAGTTGTCACAAAGTTTTGGTGAGTTTTGCGAAATCTCAAGTGTGTAGGAA-----------AGAGTTTT----------------------------CTTCAAGATCCACTTTATCCGTTTCAACGTGGGAGAATGCACTGCAGACGTCATCAGACAATTGAAAGTCCGAAATTCGGGTGGATGCGTTTTTGGAGCAAGTCGACAAGAAGAGCCG------AATGGTGAGAGTTTTGTGAGAGAGGCTGCCGCATTGATTTTGGAGTACAGTCAGGAATATGTCAAGTCTGTGGTGAAGG-TAg
i caeJap4.Scaffold18194 C 0 C 0

a score=80249.000000
s ce10.chrX              5346914 144 + 17718866 CATTG---AGC---------AAGATAATGTC----TAAATTTGAAGTTGTTTT-----TAGAAACGGCTAATATTCCCGAGCAAGCCAATTCATGGAGTTTCCAACTACGCCCCAAAACACTGTAAAACGCAAATGTGCCTGTGTCAATTTATCGACGAGGTAAG
s cb4.chrX              10705426 140 + 21540570 CAGTGAGCAATAC------aaatatcgaatt--------------tttaattt-----cagaagcGTCTCATCTTCCCAAGCAAACCAATACACGGAGTCTCAAACTACGCACCAAAGCACTGTAGAGCCATGATGTGCCTGTGCCAGTTCATCGACGAagtaag
i cb4.chrX              I 266 C 0
s caeRem4.Crem_Contig0   2123983 130 -  4500979 -AGTG---------------GAAGTGgaaca--------------ttttattt-----cagaaacgtATAGTTTTCCCAAGCAAACCAATTCACGGAGTTTCCAACTATGCACCAAAGCACTGCAAGACTCAGATGTGCCTTTGTCAGTTCATCGATGAGGTAAT
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold527     71754 145 -    90967 --GTG-GAAGT---------TCTATGGGATC---GAAAATCATAGGCATACTT-----CAGAAGCGCTTGATCTTCCCTAGTAAGCCGCTTCACGGAGTCTCAAGTTATGCACCGAAACATTGCAAAACACAAATGTGCCTTTGTCAATTTATAGATGAGGTCag
i caeSp111.Scaffold527  C 0 I 133
s caePb3.Scfld02_0       3629271 149 +  4147112 --ATGCGAAGT---------GaggtgaaatttgaaagaaacataCTTACTTTT-----CAGAAGCGGTTGATCTTCCCAAGCAAACCAATCCACGGTGTTTCCAATTACGCTCCAAAACACTGCAAGACTCAAATGTGCCTCTGCCAGTTTATTGACGAGGTAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   489935 151 +   823664 ------------cacgtggaaaaaaaaaatt--aaaaatatgtaACtttttttATATGCAGAAACGCCTTATCTTCCCAAACAAACCGATTCAAGGGGTCTCCAACTACGCACCGAAGCACTGTAAAACACAAATGTGCCTTTGCCAATTCATTGACGAGGTGAG
i caeJap4.Scaffold18194 C 0 C 0

a score=-1444.000000
s ce10.chrX              5347058 2 + 17718866 C---A
s cb4.chrX              10705566 1 + 21540570 ----a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2124113 1 -  4500979 ----A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3629420 5 +  4147112 TATAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   490086 2 +   823664 ---TA
i caeJap4.Scaffold18194 C 0 I 1484
e caeSp111.Scaffold527     71899 133 -    90967 I

a score=-1404.000000
s ce10.chrX              5347060 5 + 17718866 TTTTT-
s cb4.chrX              10705567 6 + 21540570 tttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2124114 6 -  4500979 GTTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3629425 2 +  4147112 GT----
i caePb3.Scfld02_0      C 0 I 115
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I

a score=520.000000
s ce10.chrX              5347065 19 + 17718866 ----TAATTTTGCTT------TTTCGATC
s cb4.chrX              10705573 29 + 21540570 caaaaaattatgcttGACAAGGATCGGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2124120 23 -  4500979 AAGACAATTTAACTT------GTTCGTTC
i caeRem4.Crem_Contig0  C 0 I 58
e caePb3.Scfld02_0       3629427 115 +  4147112 I
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I

a score=-318.000000
s ce10.chrX              5347084 88 + 17718866 TAGAGTACATTTATAAATTATCTACCTTGATTCATTAATATGAAACAACCCTCCAAAGATTTTAGGTCTTCACAGAAgtcaatgtttt
s cb4.chrX              10705602 68 + 21540570 TGCAACAAATACAAAACTTCTTCGGCCTAATCC-------TGATCccat----------tttgaggttttca---aatcgagaatttt
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3629427 115 +  4147112 I
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=-7816.000000
s ce10.chrX              5347172 121 + 17718866 ggtaaataggcaaatttttcaaaaacgtgg-------------acttttcgagaatt--tttgat------------------tgagcattgctgcatgctttaacgagt--agcatattt--aaataccaa---------caattgaaacgcaattaagctatata
s cb4.chrX              10705670 145 + 21540570 tgaaactagt-----------AAAAAGCGGAGCGTTTCCATCAAGTATcc----attaattaaaaaaatatatatgggCCTAATGAGTCAAGC--CGGGGTTCGGCGAGTGCGTGAGACCT--GAGTACCAACCAgataaacattaaaaa---aattatgccGTGTA
i cb4.chrX              C 0 I 113
s caePb3.Scfld02_0       3629542  67 +  4147112 aagaaatag------------gaaaagtGG-------------AATACTC----ATT--TTAGAA-----------------------------------------------TTAAGACTTCAGAATATGAACGAG-----TATCTGGAA-----------------
i caePb3.Scfld02_0      I 115 C 0
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143  58 -  4500979 I

a score=-1282.000000
s ce10.chrX              5347293 128 + 17718866 actcgtagagacgatgttttggcatatttgaaaattatgatagctgaaaattgtgtTTCCACCACTTCAAATCAGAAAATTTCAGAACGTTTTTGAAAAGTTTCACTGTG-ATATTCAAATATTTTAG--C
s caePb3.Scfld02_0       3629609  85 +  4147112 ---------------GTGTGGGCCTATAGGAGAGT----GCAGTGGGGGATGGTTATTT---------------------------ACGGTTCCAAAAGTTTATACGGGGTATAGCTAAAGtttgtaattc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e cb4.chrX              10705815 113 + 21540570 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143  58 -  4500979 I

a score=603.000000
s ce10.chrX              5347421 21 + 17718866 AAAATGATTTTG----AAATAAAAT----
s cb4.chrX              10705928 29 + 21540570 AAACAAACTTTGGACTACGCGAAACACAT
i cb4.chrX              I 113 C 0
s caePb3.Scfld02_0       3629694 21 +  4147112 aaaaaacctttg----aCGCAAAAC----
i caePb3.Scfld02_0      C 0 I 26
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=435.000000
s ce10.chrX              5347442 61 + 17718866 CTTCGTTTTATTGAC---AATTTTTAAAAATTTCAG-AAAGTTTTGTTTTTGACCTAAAACAGTG
s cb4.chrX              10705957 63 + 21540570 TTTTATCTTGTTCACTGAACTCTTGAAAAATCACGGTCCAGCCGGGTTGTT--CCTaaaattttg
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3629715 26 +  4147112 I
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=-7462.000000
s ce10.chrX              5347503 148 + 17718866 AAATGTGGATTTTTCAAAA--TTTGTGCTTTTCTAGAAACAAAAGGTATTTTCTAAAAGTC------------------------------------------------CACCAGAAAACGAAAAGATAATTTTAAAAGTGATTAGCATATGATCAGATGGTTTTTTTTGTTGAGGAACATTAGACTTTTA-AATTGTT--------
s cb4.chrX              10706020 171 + 21540570 ----gcaaattttccaattctttttttcatttct-----caaaatatatttttagaaaaaaagttactgGGAACCCGAGTTGAAACGGGCTGGGCCGcgccttgaaaatttcgaaaaaaggaaataaacaTTGTA--------------------------TCCTTCTTG-TCAGAATACCGTAGTATACGTCATTCTCCTATTGGG
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3629741  97 +  4147112 AAATGTCAATTTGAGAACT-----------------------GAcgtcttttcaaaaagaa---------------------------------------------------gagtaaaGTAGACGAAGATT-TA--------------------------TGACTGTTGCTCAGAACCGTCcacttttcg-cattttt--------
i caePb3.Scfld02_0      I 26 I 167
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143  58 -  4500979 I

a score=-1361.000000
s ce10.chrX              5347651 202 + 17718866 T---TGTTTTGA----TCAACTAATCAACGAAGGTC----CACTATTTTGACCAATTCATAA-------------AGATTAAAC----AAAAATGTAACACGTCAAAACTGTTGGTATTTCATAGAGTGTCCTGAAACACATTTTTGGCTTTAGAGGCCAACGCAACGGGCTTCTGATGAGCTCCAGATGAGCGCAAAACCTTTATTTTTTACCTATATTTTTTATATGG
s cb4.chrX              10706191 200 + 21540570 TCAATCTTTTGAAGACTGAATTCATCACCAGTTACCGTAacccttttttttcggtttcagaaTCCTTTTCAATTTAGATCAAACCGATAAAACTTTCTTTCttgaaaac---tggtttttttcagtttcacccaaaa---attcctcaatttttagTAAAAGATAACCATCTTCTAGT--------GATGACGG-----------TTTCTTATC-----TCCTCAtctaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3629838 167 +  4147112 I
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143  58 -  4500979 I

a score=36.000000
s ce10.chrX              5347853  9 + 17718866 AT--TTTAAAA
s cb4.chrX              10706391 11 + 21540570 attgcaaaaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3630005  9 +  4147112 AT--CAAAACA
i caePb3.Scfld02_0      I 167 C 0
e caeJap4.Scaffold18194   490088 1484 +   823664 I
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=-145.000000
s ce10.chrX              5347862 12 + 17718866 ATTCACAAAATT
s cb4.chrX              10706402  9 + 21540570 a---aacaaact
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3630014 12 +  4147112 ATTCGAGAAAct
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   491572 12 +   823664 atttatttattt
i caeJap4.Scaffold18194 I 1484 C 0
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=91.000000
s ce10.chrX              5347874 1 + 17718866 T
s caeJap4.Scaffold18194   491584 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3630026 3 +  4147112 I
e cb4.chrX              10706411 0 + 21540570 C
e caeSp111.Scaffold527     71899 133 -    90967 I
e caeRem4.Crem_Contig0   2124143 58 -  4500979 I

a score=40571.000000
s ce10.chrX              5347875 59 + 17718866 ATTTCAGAAAAAATTCAACGCAAAGCCAAAAAAGTGGTACGAGAAATATATTTGATTAC-
s cb4.chrX              10706411 57 + 21540570 -ttccAGCGTCACTTCAACCCGAAACCGAAGAAGTGGTATGCCAAGTATATCTAACTG--
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2124201 58 -  4500979 atttcagagaaaattcaATGCAAAACCAAAACGCTGGTACGTCAAATACATCTAACTG--
i caeRem4.Crem_Contig0  I 58 I 6
s caeSp111.Scaffold527     72032 58 -    90967 atttcagaaaaagtttaatGCAAAACCGAAGAAATGGTACGTGAAATACATTTAACTG--
i caeSp111.Scaffold527  I 133 C 0
s caePb3.Scfld02_0       3630029 59 +  4147112 ttttcagagaaaattcaatGCAAAACCACGAAAATGGTACGTGAAGTACATCTGAGCAC-
i caePb3.Scfld02_0      I 3 I 56
s caeJap4.Scaffold18194   491585 59 +   823664 ctttcagaagaaattcaacgcgaaacagaaaaaatggtACGAGAGATACATTTGATGG-A
i caeJap4.Scaffold18194 C 0 C 0

a score=-13990.000000
s ce10.chrX              5347934 54 + 17718866 GAGCCATCTGATATGT---------------GATGTCA-TTCTACTTCTCGAAATTGCAACAA-CAACAAC
s cb4.chrX              10706469 34 + 21540570 -------------------------------GACAACATTGCTATCTT------TTCCCGCAATCTGTGAT
i cb4.chrX              I 1 I 22
s caeRem4.Crem_Contig0   2124265 32 -  4500979 -------------------------------GACAgc--ttctttcca------tttcaacaTTCAACATT
i caeRem4.Crem_Contig0  I 6 I 19
s caeSp111.Scaffold527     72090 53 -    90967 GAGCCA----ATATGCCAAAACCCCCAATTCAACAAC--TGCTATCCT------------CATTCGACAAT
i caeSp111.Scaffold527  C 0 I 1
s caeJap4.Scaffold18194   491644  9 +   823664 ----------------------------GGAAACGAC----------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3630088 56 +  4147112 I

a score=-12497.000000
s ce10.chrX              5347988 353 + 17718866  
s cb4.chrX              10706525 400 + 21540570  
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   2124316 363 -  4500979  
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold527     72144 322 -    90967  
i caeSp111.Scaffold527  I 1 C 0
s caePb3.Scfld02_0       3630144 386 +  4147112  
i caePb3.Scfld02_0      I 56 C 0
s caeJap4.Scaffold18194   491653 384 +   823664  
i caeJap4.Scaffold18194 C 0 I 45

a score=-5281.000000
s ce10.chrX              5348341 54 + 17718866 ACCTACTCA-AATAAAAAAGTTACATATATTGGAATAAGATGGAATATTCCAACA
s cb4.chrX              10706925 39 + 21540570 CCCTCAccgaaataaaaattttttttg---------------aaactcacaga-c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2124679 35 -  4500979 aCTTTcc---aatgaaacattttctc-----------------aatgtatgaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     72466 34 -    90967 tgttttttg-aatgaaa---tttctc-----------------aaagTATAGCCA
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3630530 39 +  4147112 tttttctcgaaatgaaacattttctcg----------------AAAGTACCATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   492037 45 +   823664 I

a score=39907.000000
s ce10.chrX              5348395 390 + 17718866  
s cb4.chrX              10706964 376 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2124714 374 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     72500 390 -    90967  
i caeSp111.Scaffold527  C 0 C 0
s caePb3.Scfld02_0       3630569 393 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   492082 377 +   823664  
i caeJap4.Scaffold18194 I 45 I 468

a score=3464.000000
s ce10.chrX              5348785 6 + 17718866 TCAGCC
s cb4.chrX              10707340 6 + 21540570 TCAGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2125088 6 -  4500979 CAGGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold527     72890 6 -    90967 TCAGCC
i caeSp111.Scaffold527  C 0 N 0
s caePb3.Scfld02_0       3630962 6 +  4147112 TCAACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   492459 468 +   823664 I

a score=-2210.000000
s ce10.chrX              5348791 339 + 17718866 CTCCCACACAGATGA------TATTTGATTTTTTAAAATTTCGAACATAGTTTCTCATTGCTATTTGCTCCAAAAACTATAAGCTTCTAGGAAA-----------AGTTCATAATTC-TTTTTATCGTTTTTACGCGAGTTATTTTTAAATGATAA-------CAACATT------CTTGAAAAATATAATTCAAAAGATGAGAAAAAAATATTATCAGCAAAATACTTGAAATTTTTCTCCCCTCTTT-----------------GTTTGGTTTTGC----TTGTTCTACTG------aaaaaaaatcaaaatt-aatataataaatttCAGGAATTCGTCGTAGTC---AGAAATGCCTAGGGATCGGTTAAAGGAATTACAAGTGAGTCATATATTAA
s cb4.chrX              10707346 258 + 21540570 CACCCACACatttttcgtgtgtgtgtgatttttt-gaatttcgaacatttttt---------------------------------ctaaGAGACAA---------------------TTTCTCGCGTTTTTGAGCCGATTATTTA-----GATAG-----------------------GCAAGAC----TCTAGGA------------ATTTTATCAACGAAACAC---AAAGTTGTTTTTCCTCT-------------------CTCCGAACTT------------TTCAA------GAATGttgttaatttc-aaaataactttttatagGGCTTTACCGTAGTC---AGTCATGCCTAAGGATAGATTAAAGGAGTTGCAGGTGAGCAAaactatta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2125094 336 -  4500979 CACCCACACATGTTT--------TTCGattcttt-gaatttcgaaCATTCTTTA-----------------------------CTGATACGAAACAGAAATAGCTATCACAGAACGC-CTTATTACATTCGTTTGATTATTGTTTCT--GTGATAATACACTGCAAATCC------TTTGAAGAAT----TCTGAGAGAT--AGATAGCATATTATcagtgaaacat-----ttttcatttttctctgggTGCAGTGTGCATCACACTTTGAACTTAC----TTAATCTTTAATTATACGTATTCCTTGAATTACtaatgtttctattttcagagtttcaccGTAGTC---AACAATGCCACGAGATAGATTACAGGAGTTGAGGGTGAGTGATATCTTGA
i caeRem4.Crem_Contig0  C 0 I 204
s caePb3.Scfld02_0       3630968 288 +  4147112 -ACCCACATTTATGT------Tattggattttcg-aaatagCTTACATTTTCTAGAA---CAGTTTTCTC-------------CTGTTCCGAGACCGAAG-----ATCATGAAATATGATTAT----TTCTTGTAGTGACTGGTCA-----AATAA-------CAAAACCAGAACATTccgaatat----tttgaa-------------atgttatcagttgaaga------attttttgtttctc--------------------cgtTAAACCTTCCGCATTATTCTTCAA---------------TGAtgat-aaaacag-ttttttcagagctttaCCGTAGTCCATCACAATGCCTAGAGATAGATTAGAAGAGTTAAAGGTAAGCAA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   492459 468 +   823664 I

a score=971.000000
s ce10.chrX              5349130 34 + 17718866 ATGGGTTTGTTTTAAGGTGTAAAAACATGTTTTT
s cb4.chrX              10707604 27 + 21540570 -ttattttttctcg------aaaaacatattttt
i cb4.chrX              C 0 I 125
s caePb3.Scfld02_0       3631256 34 +  4147112 ATGATTTTAATGAGGATAGTAAAAAtagagtttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   492459 468 +   823664 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=341.000000
s ce10.chrX              5349164 6 + 17718866 AATGTT
s caePb3.Scfld02_0       3631290 6 +  4147112 aatttt
i caePb3.Scfld02_0      C 0 I 78
e caeJap4.Scaffold18194   492459 468 +   823664 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=0.000000
s ce10.chrX              5349170 400 + 17718866 AATTATACACAAAACATTAAAACAAAAACAAACATGTGTTTTGCTGTTAAGTTTTTCAACATGCTAGCTATGAACAAGAACCAGTAAAATAACGAATCTCAAAAATGTATCTGGAAAAGGGCTGACGATTGTTCGTTTTTAAATTTATCAATTTTAATGACCCTCGTAATTGTAATTAGAGCGTAAGTATATGCAAAATTTCAAATTTATAAACAACAATTTTCCCAATTTCACAATTTTTAGTTTTTGCTTGTTTTGTGCTCTTGTCAAAAAAAATTTTGGTCGTTGTCTATTTTGGAGAAACAAATTCAACTTCCGAAAAAAAAAAACTTAGCCCTGTTCTGAGGGTACTCAAATGGATTTTGTTGGTACAAGTTATCTTCATAATAAGAACAGCTAA
e caePb3.Scfld02_0       3631296  78 +  4147112 I
e caeJap4.Scaffold18194   492459 468 +   823664 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=669.000000
s ce10.chrX              5349570 80 + 17718866 TTTTCAGGAAAAAGC-AACAGTTAACACTATACATGCATATAATTATGATCCACCTGCACGAAAAT---------------ATGACGTGGAATCCC
s caeJap4.Scaffold18194   492927 89 +   823664 ttttcaggaaaaagcTGGCATTTCACAAGATACTT---CATCATC----TCCAACAGTCCGAAGACCTCAATCGTTTAACAATGACTCGGCCGCAC
i caeJap4.Scaffold18194 I 468 C 0
e caePb3.Scfld02_0       3631296 78 +  4147112 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=5662.000000
s ce10.chrX              5349650 38 + 17718866 AACCTTTAATAAATCAAGATGCTGACTTTGAAATGGTA
s caePb3.Scfld02_0       3631374 38 +  4147112 AACCACTTATTGATGCAGATGCAGACTTCCAACTGGTG
i caePb3.Scfld02_0      I 78 C 0
s caeJap4.Scaffold18194   493016 38 +   823664 AACCACTTATCGATCAGGATGCAGATTTTGAAATGGTA
i caeJap4.Scaffold18194 C 0 I 1052
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=692.000000
s ce10.chrX              5349688 11 + 17718866 AGTGTTTTGTT
s caePb3.Scfld02_0       3631412 11 +  4147112 AGTGTTTAGCT
i caePb3.Scfld02_0      C 0 I 317
e caeJap4.Scaffold18194   493054 1052 +   823664 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=0.000000
s ce10.chrX              5349699 362 + 17718866 TACAGCCTTTTTTGAAACAAAATCTTAAATGTTTGGGCATTTTGAGACAAAAAATCTAGTTTAAAACATCAAAACATGGAGTTCTGTAATAGATGATGCAAGTGATAATGAAACTTTATTTTGGAATTGCTTAATTTCTTCGATTGAGTACTTGTACATAAACTACGAAAATGCTCATTCTAATTAATCCAAAACACAGAAATGTCACAGAAAAGTGATGAATAGGCTCAAAAAGCTCAAACGCAGTGAACTAATCACTTCATCGATTTTCATAAAAAATAATGCCAAATGAACTTGAAATTGTTCAATTCATTGAAGTCGTTTATAAAAGAAAGTTGAAAAAAAAGTACAAAATACAAGTA
e caePb3.Scfld02_0       3631423 317 +  4147112 I
e caeJap4.Scaffold18194   493054 1052 +   823664 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=240.000000
s ce10.chrX              5350061 16 + 17718866 CAAAGCAACAAATAAA
s caePb3.Scfld02_0       3631740 16 +  4147112 CGGATCAACTTGCAAG
i caePb3.Scfld02_0      I 317 C 0
e caeJap4.Scaffold18194   493054 1052 +   823664 I
e cb4.chrX              10707631 125 + 21540570 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=877.000000
s ce10.chrX              5350077 5 + 17718866 TTAAA
s cb4.chrX              10707756 5 + 21540570 TCAGA
i cb4.chrX              I 125 C 0
s caePb3.Scfld02_0       3631756 5 +  4147112 TTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   493054 1052 +   823664 I
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=-5221.000000
s ce10.chrX              5350082 26 + 17718866 AA-----------CAAACATCCCAAAACTATACTCAT-----
s cb4.chrX              10707761 22 + 21540570 aa-----------acaatatttgaaaatttctt---------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3631761 33 +  4147112 AACTAAAACGTCCACAAAATtacaaacaattat---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   494106 35 +   823664 ---aaaaacctTGCCAAAATTACCGATTCACTT----CTTCC
i caeJap4.Scaffold18194 I 1052 C 0
e caeRem4.Crem_Contig0   2125430 204 -  4500979 I

a score=136034.000000
s ce10.chrX              5350108 541 + 17718866  
s cb4.chrX              10707783 442 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2125634 442 -  4500979  
i caeRem4.Crem_Contig0  I 204 C 0
s caePb3.Scfld02_0       3631794 495 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   494141 498 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-9639.000000
s ce10.chrX              5350649 70 + 17718866 CCCGTAGTTTTCAAATTGATTCACAAATTGTAGTAAAAAATCGACCCGTAAAATGTCAGCTGCTGTATTT----
s cb4.chrX              10708225 15 + 21540570 ----------------------AATAGCCG---------------------------------CTAATct----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126076 25 -  4500979 ----------------tgatataatGCCTA---------------------------------CTAATGTGTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3632289 47 +  4147112 CAGGCAG-----AAGCTGAAACAAAGATTGAAGAAGACAAACgc------------------tcttgttt----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   494639  0 +   823664 C

a score=-1062.000000
s ce10.chrX              5350719 8 + 17718866 TTTTCAGA--
s cb4.chrX              10708240 8 + 21540570 --gtctcaaa
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3632336 8 +  4147112 tttccttg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   494639 0 +   823664 C
e caeRem4.Crem_Contig0   2126101 0 -  4500979 C

a score=375.000000
s ce10.chrX              5350727 26 + 17718866 ATAAAGTTGGTACAATTTTACAATAT
s caePb3.Scfld02_0       3632344 26 +  4147112 ACATAGCCCACTCAAATACAAAATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   494639  0 +   823664 C
e cb4.chrX              10708248  0 + 21540570 C
e caeRem4.Crem_Contig0   2126101  0 -  4500979 C

a score=-9851.000000
s ce10.chrX              5350753 103 + 17718866 GGA------------------AAACCTAAAAAAAT---ATTTATCATA---------TTGATGACTGAAAATATTTCGGAAAAT---ACATTAACTTATATTTGAAAAAAATACAGTTTATGAAGATTTTTTTTTA
s caePb3.Scfld02_0       3632370 121 +  4147112 CCATACGCTCACATCCTCATGTAACGTGAATAAACCAAATTAATCGTAACAGGCACcttaatctcaaaaaacaactgcAAAAATGTCGCAATAAGGAATAATTCAAACCAATC------------ATTTCCCT---
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18194   494639  18 +   823664 -----------------------------------------------------------------------------------------GTGAAACCAAAACTGAAA-----------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10708248   0 + 21540570 C
e caeRem4.Crem_Contig0   2126101   0 -  4500979 C

a score=-3628.000000
s ce10.chrX              5350856 28 + 17718866 -CAAGAATCGCAAAGTAAACAAAATTTTT
s caeRem4.Crem_Contig0   2126101  6 -  4500979 -CAGGAA----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3632500  5 +  4147112 -CAAGG-----------------------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18194   494657  2 +   823664 CC---------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10708248  0 + 21540570 C

a score=136911.000000
s ce10.chrX              5350884 225 + 17718866 TTTTTAGGAAACATGCAACTCAGCGATGAAGAGATTGAAAATGCAGTATCTTCTGGAAACCTTTCTGAAGTAACAAAAGGTGTGATGTTGGCGCTAAACGAGAAAAAGGCCTTATATGATGAAGTTAAATCCCGAGCGGATGAGCTGAAAAATTTGGAACGTCAGATGGGCGAACTGGCACAAATGTTCCACGATCTCCATATAATGGTTGTCAGTCAGGCAAGT
s cb4.chrX              10708248 225 + 21540570 ttttcaggaaacatGCAGCTGAGCGACGAGGAGATTGAAGATGCGGTTTCATCTGGAAATCTTTCCGAGCTCACAAAGGGCGTCATGTTGGCAATGAATGAGAAGAAGGCGCTGTACGATGATGTGAAGTCTCGAGCAGatgagttgaaaaatttggagcgACAGATGGGAGAACTCGCGCAGATGTTCCATGATTTGCATATTCTGGTTGTTAGTCAGGTAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126107 215 -  4500979 ----------ACATGCAGCTTAGCGATGAGGAAATCGAAGACGCAGTATCTTCAGGAAACTTGTCAGAACTGACGAAAGGTGTTATGCTGGCgttgaatgagaagaaggcACTGTATGATGATGTCAAATCACGTGCTGACGAATTGAAGAATCTGGAACGACAGATGGGAGAACTCGCGCAAATGTTCCATGATCTCCACATTCTGATTGTCAGTCAAGTAAgt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3632505 225 +  4147112 TTTTCAGGGAATATGCAATTGAGCgatgaagaaattgaggatGCGGTCTCTTCAGGAAACTTATCGGAGTTGACGAAAGGAGTTATGCTTGCcttgaatgagaagaaagctCTATATGATGATGTGAAGTCTCGCGCCGATGAGTTGAAGAATCTGGAACGTCAGATGGGAGAGCTGGCTCAGATGTTCCATGATCTTCACATTTTGGTCGTCAGCCAGGTGAGT
i caePb3.Scfld02_0      C 0 I 70
s caeJap4.Scaffold18194   494659 225 +   823664 TATCTAGGAAACATGCAGCTGAGCGATGAAGAGATTGAAGACGCAGTCTCTTCTGGAAACTTGTCAGAGCTCACGAAAGGTGTGATGCTGGCGTTGAACGAAAAGAAAGCGTTGTACGACGACGTGAAGTCTCGTGCCATTGAACTGAAAGTTCTGGAAGGGCAGATGGCTGAACTCGCTCAAATGTTCCACGATCTTCATATTTTGGTCGTCAGTCAGGTGAGA
i caeJap4.Scaffold18194 C 0 C 0

a score=-1646.000000
s ce10.chrX              5351109 7 + 17718866 ----ATTTATT
s cb4.chrX              10708473 2 + 21540570 ----AT-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126322 7 -  4500979 ----atttcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   494884 6 +   823664 GAGAAT-----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3632730 70 +  4147112 I

a score=-7413.000000
s ce10.chrX              5351116 112 + 17718866 TTATTTTTTTCCGAAAAAAACCACATAAAAAGCGATCGCG------------------TGAAAA-------GGAATAAAATTCATATGCATTTCGGGGAGAGGT----------ACATCATTCGG-------------CTTCAATTCATATATTATTGAT
s cb4.chrX              10708475 147 + 21540570 -------------AAAATaagtttggaaaaagtgaACTCGAGTTGGACtttatgaaattgaaaacactCGGGGCAgctaattcagaaaaaaattggcaaaaaaccaatgcgtaaaaaTCATCAGGGCATCGTATAGAACATAAAAACGTATATCAGTGAT
i cb4.chrX              C 0 I 30
s caeJap4.Scaffold18194   494890  84 +   823664 ---CTTCCTTGCGAATAGAAT------AAGGGCAA-----------------------TAAAAA----------------TTTATGCATGCATCTGAGCGGCAC--------------------GGCGTTGCTT----TTTATTCTCTTATTTTAT----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3632730  70 +  4147112 I
e caeRem4.Crem_Contig0   2126329   0 -  4500979 C

a score=-335.000000
s ce10.chrX              5351228 48 + 17718866 TTTGGTAATT-TTTTTGCTTCATTCTGTATATGTTTTTACAACTGTAAT
s caeJap4.Scaffold18194   494974 29 +   823664 TCTCACAGTTCTCTTTGCTgcgt--------------------tgcaaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3632730 70 +  4147112 I
e cb4.chrX              10708622 30 + 21540570 I
e caeRem4.Crem_Contig0   2126329  0 -  4500979 C

a score=1602.000000
s ce10.chrX              5351276 17 + 17718866 TTTTTAAAGTTTCTACA
s cb4.chrX              10708652 17 + 21540570 ttttaaaattttccaag
i cb4.chrX              I 30 C 0
s caeJap4.Scaffold18194   495003 16 +   823664 ttttcaaattttcaaa-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3632730 70 +  4147112 I
e caeRem4.Crem_Contig0   2126329  0 -  4500979 C

a score=-806.000000
s ce10.chrX              5351293 267 + 17718866 TTTTAGGAGTTTTAAATTTGTTAAAAACAAATGCAACAAATTGTTCGAGATACGATGCCGAAATCAAAACGCAAAATTTTCTTTAAAATTATTTTTCAGTGCAAATCTAGACAACCTTTCACAATTATT-----TTCGAATTTTCTCATAGGAGCGCTATTGTGATTTCTGTCAGGAACGCAATAAAGAGAGGAGCTATGTTTCGACTCCGTAATTTGTCTAATTTTGCTCTCCCACCTGGACCTGCATTCCTGTTATATCGATCAAAAAAT
s cb4.chrX              10708669 191 + 21540570 --------------aatttgTTAACATATGATGTAAATATTTG--------ACGAC----------AATTTCTAAATAtactaaaaaactttttggtcggagaaatt-----gacttttttagattctcatCGGTCCGACTGTACCGATATCGGTGC-ACTCCGAATTTTATCCTgaaaaaactacagaaa----------------------aattAGATAATTT--------CTCATGGAGTtgcatt-------------tcgaaaaat
i cb4.chrX              C 0 I 24
e caePb3.Scfld02_0       3632730  70 +  4147112 I
e caeJap4.Scaffold18194   495019   0 +   823664 C
e caeRem4.Crem_Contig0   2126329   0 -  4500979 C

a score=0.000000
s ce10.chrX              5351560 15 + 17718866 GATCCCCATTCACTG
e caePb3.Scfld02_0       3632730 70 +  4147112 I
e caeJap4.Scaffold18194   495019  0 +   823664 C
e cb4.chrX              10708860 24 + 21540570 I
e caeRem4.Crem_Contig0   2126329  0 -  4500979 C

a score=605.000000
s ce10.chrX              5351575 156 + 17718866 TTTTTGAATTTTTCAATGCATCTTACTGTTGCTTTCCAATAATCTTTTTAAAATCCAAATTATTTTTTAATATATGTTTTCAATATCAAAACTGCAGCTTTAAACTTTGGaaatattgaattatatttttaaaaa-aatCTCAA--TCTAAAAACGACC
s cb4.chrX              10708884 140 + 21540570 TtcttgaagttctgaaactcaGTTTTTCCTACTCTCCGTTAG-CTTACAAAGATCTGAAAAA------------------CCGTATGAAGATTGCATCCTTCAAGAATGTGTGTACAgtgttaaaaatcgaaaaataatctTAAGCTCTGACAAAAACT
i cb4.chrX              I 24 C 0
e caePb3.Scfld02_0       3632730  70 +  4147112 I
e caeJap4.Scaffold18194   495019   0 +   823664 C
e caeRem4.Crem_Contig0   2126329   0 -  4500979 C

a score=-996.000000
s ce10.chrX              5351731 25 + 17718866 TAGTTGTCAATAAAGTAACCATTTT
s cb4.chrX              10709024 15 + 21540570 -----TTGATCACTA-----ATTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126329 20 -  4500979 tagtttttaacaaaa-----accAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3632730 70 +  4147112 I
e caeJap4.Scaffold18194   495019  0 +   823664 C

a score=-734.000000
s ce10.chrX              5351756 15 + 17718866 GAACATTTGTTTTTG
s cb4.chrX              10709039  8 + 21540570 GTACAATT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126349 12 -  4500979 GAACATTC---ATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3632800 15 +  4147112 gaaCGATCGTCATAT
i caePb3.Scfld02_0      I 70 C 0
e caeJap4.Scaffold18194   495019  0 +   823664 C

a score=106035.000000
s ce10.chrX              5351771 216 + 17718866 TTTCAGGGAGAGATGGTGGACAGTATTGTTAACAGTGTAGAAAATGCCACGGAATATGCTAAACAAGCGCGTGGAAATGTGGAAGAAGCCCGAAACTTGCAAAAACGAGCTCGAAAAATGAAGGTGTGCATCATCATTGGTTCAATTATAGCTGTTTTAATTCTGATTCTCTTTATTCAATCTGCCGTTTGCCACTTTACTCCTATTTGTTAAA----------------------------TG
s cb4.chrX              10709047 215 + 21540570 -TTCAGGGTGAATTCGTGGACAACATCGAGAACAGTGTCCAAAACGCCACCGAATATGCGAAACGTGCGCGTGGAAATGTTGAAGAGGCGAGAACCCTTCAAAAACGTGCTCGAAAGATGAAGGTTTGCATCATCATCGGTGCTATCATTGCTGTACTTATCCTTCTTGTCTTCTTCCAAGCAGCAGTATGCCACTTCACTCCAATTTGCTAAC----------------------------TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126361 241 -  4500979 ATTCAGGGCGAGATGGTAGACCATATTGAGAATAGCGTTCATAACGCTACTGAATATGCTCAGAGAGCCCGTGGAAACGTTGAAGAAGCTCGAACACTGCAGAAACGTGCTAGAAAGATGAAAGTGTGCATCATCATCGGAGCAATCATTGCAGTATTGATCCTTCTTGTCTTCTTCCAAGCTGCTGTGTGTCATTTTACTCCAATTTGTTGattatttc---ttgaaaactagCTTTGTCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3632815 237 +  4147112 TTTCAGGGCGAAATCGTTGATCATATCGAGACGAGTGTCCTGAATGCCACGGAATACGCCAAAAAGGCTCGTGGAAACGTGGAAGAAGCCAGGAATCTCCAAAAACGTGCTCGGAAGATGAAGGTGTGCATCATAATCGGTGCGATCATTGCTGTTCTCATCCTTCTGGTTTTCTTCCAAGCAGCAGTTTGTCATTTTACTCCAATTTGCTAGTcctatcaaaacaaaaacaagt-------gc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   495019 216 +   823664 tttcagggCGAAATGATGGACCACATTGAGACTAACGTTGAAAGCGCCAAAGGATATGCTCATCAGGCACGTGGAAACGTGGAAGAGGCACGACGTCTTCAGAAACGTGCTCGAAAAATGAAAGTGTGCATCATCATCGCCACCATCATCATTGTACTGATTCTCCTCGTCTTCTTCCAAGCAGCGGTGTGCCATTTTACGCCAATTTGCTAGCTG----------------------------
i caeJap4.Scaffold18194 C 0 I 542

a score=-3062.000000
s ce10.chrX              5351987 342 + 17718866 CTCA---------AACATATGGTTGT-----TTTG---------------------------------CTGCAAAATTG------CGGCAACTCTGA--TTACACTGT--------------ATTTCACTGTATCTTTA-------TTGCACATCCCTCATCATCACGACCAGTCACTAATTTGATCGCTTTAAGATCTTTC--TCACTTT---TTGATTCG--TTTCTAATTTTTAATT--------TGGCAGATTTTCCAACTGATAATATG---GAGTTCACTTATCCGTTTCA------TCGTTCTCAGCTTTTCTGCCGTTTATTGTGTGTTTTAATATTCAA-TATTTTC-------TCTGTGTGCCTTT-------------GTCTTTTTTGTTGTATTATGTGTGACCTATGCTTTGAATATCAACAAGAATTGGTTTTATAATTAAAATTCTTT-
s cb4.chrX              10709262 359 + 21540570 CTCA----TCttttttgtcacatttt-ttactttt-------------ATGAACTCTTAACTGTAC--CTAATGAATAGCTTTTTCGTGAATCCCCTCCCTGCCCTTT-----TTCCCACAACCTCACCTATAGcttttattcaatttctaaT----------TCAAG-CCAGTCAC-ATTTCGATCGCTTTAAGATCTTTT--TCCGTCTCTATCGATTCG--CCT-TCCTTTCTACTT------------------TTT--CTCATTTGATGCTTGTGTTCACTTATCTATTTTCTATGGTTC--TCTTCGCTTGTTCGC----------------------CAAATTTTCCTCCTGA---AATGCGTgcctttttatttttaaaagttttgtatttttgaaatatcaatgaatttttcgaaatttgt----attCATATATCT------------TTTCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126602 365 -  4500979 CTCATTTGTCTattatttcctattttctcaattttctcaaacatAACAATAACAAATTGGTTGTGCATTTCATAAGTGGCACCCTTGACAGTTTATT--CTGCTATT-------------AAATTACTGTGTATCTTTT----------CAAT----------TGATG-TCAGTCACAATTTCGATCGCTTTAAgatcttct--tcctttt---tcgatTCG--TCTctaatttctgtttctc-----aaaGTGATTGTCT--CTCATGAATTGCTTGTGTTCACTTACTTGTTTTA------TC--TCTCAGCTTTTCcgc----------------------caaa-tttctttttgatatattgCGTGCCTTTT------------CTTTCAACTCTTGTAATATGTGTGAATCTTGCGTTGTTCATCAACAttaataaatttatgaaa------ttattA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3633052 365 +  4147112 TTTA----TAATTTatgtgtaatttt-----tttt----------------actattttgtCTTAC--CTCAGAAATGG-----TCGTGCATTTTTT--CTGCCCTAGTCGAATTACATCAGCCTTAAAT-tagctttt----------caattttctcatcatcaat-CCAGTCACATCACTGATCGCTATCAGatctttcaaaactgtt---tcgaTTCGTacctttttctcttgtttttctctcttgagTGATTTTCT--CTCCTACGATGCTTGTGTTCACTTACTTGTTCCA------TCGTTCTCAGCTTGTCTGcctattttt-----------tgtcaaa-tttcttt-------tctgcGTGCCTTTT------------GTTTCAA---TTGTAATATGTGTGCATT----GGTTCTCACCAATAAGAATTTTTCTCCTCAAC---ATTTTCT-
i caePb3.Scfld02_0      C 0 I 6478
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=-8203.000000
s ce10.chrX              5352329 138 + 17718866 CAATAAAGAGAATTCTGATAAGAATTTCATTTT-------------------TTTTAATGTTATAAAG---TGTTTTGAATAAGTTCTAGTAGTCATGAAATACAAAGAAAATTTTGTGTAACATTTCTCGAGAAAACACAAATAAAATCAGC-----AAATTCC-
s cb4.chrX              10709621 102 + 21540570 CTAC-------GTGCCAAGCACGATTTTTTACT-------------------CTTTGATCTGCTAGTATTTTATTTCCCATCAAAATAGACC--CATGAAAGGC-----------------AGAGCGATCGAGATGA-ATAA----------------AAAGTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2126967 153 -  4500979 CTAC------AGTgtcaaaatatgttttttagTGAACCAATGTGTTCaggaaaattgataatttaaaaatatattttgagaaaaattagattAACATAAACAACCGG------CTTATTTTAGACCGTTTTCCACAA-ACAAACAAGAATTTCATAACAAAGTTTC
i caeRem4.Crem_Contig0  C 0 I 150
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=450.000000
s ce10.chrX              5352467 21 + 17718866 AATACGGCAAATTACTGAGAA
s cb4.chrX              10709723 20 + 21540570 -ATATGAAGAACCAGGGAAAA
i cb4.chrX              C 0 I 249
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I
e caeRem4.Crem_Contig0   2127120 150 -  4500979 I

a score=0.000000
s ce10.chrX              5352488 74 + 17718866 TTTCAAAAACCATAaattatcaaaatttttgcgtgcttgaaaaattaggaaactagcatttgccgacattgcca
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I
e cb4.chrX              10709743 249 + 21540570 I
e caeRem4.Crem_Contig0   2127120 150 -  4500979 I

a score=44.000000
s ce10.chrX              5352562 169 + 17718866 attgcttaaatgtcgaggagctagcaattccca-------atagccaaaaatgtcagaaaccagtaactgcaaaaacttccaaaaaatatccaaTTGTCGTATAACCTGGTAACACTTTCAAC--------------TTGTCTTTGCCGAATTTTCCTTGATTCTTTTTTAAATTTAACGCACTTCATAA
s caeRem4.Crem_Contig0   2127270 182 -  4500979 ATCGCTTGCATactataaaaatttcatttctcagCAAAATAGAACCATGAAAAGCGGACggcaaaatgaataaaaagtcATATGAAATATCGGAGCGAAGCGTCACTCT---ATCTTTTCGACTGTGAATCGTTCCTTTCTCTCTGCAgtggtttc-----ttctttttttcaaatatttcagtgaGTAA
i caeRem4.Crem_Contig0  I 150 C 0
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I
e cb4.chrX              10709743 249 + 21540570 I

a score=136.000000
s ce10.chrX              5352731 2 + 17718866 AT
s cb4.chrX              10709992 2 + 21540570 AT
i cb4.chrX              I 249 C 0
s caeRem4.Crem_Contig0   2127452 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 I 208
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=-938.000000
s ce10.chrX              5352733 189 + 17718866 CTTCACGTGCACTACTTTGCTTTCTTTTTCGATAAGCTTCAAATTaacaaaacctaaaaatacggtaccttttaagaaaagcataattttttgcatcaaaaatgagcagtcttgtcgagaccaggaggtaccatatttctgggtcaaacattaaaaaatttTATGAGAGATATTTTCTCTAAAATCTTA
s cb4.chrX              10709994 132 + 21540570 CCTTGTTGGCACTATTCT-CATTCTCCT-------GTTTCTTCTTTACGCTCTCTTGGAATACGATATGTGC-----------CAGTTTTTGTCAT------TCTGCTGACTCTTTCAAATCA----------------------AATCGTTGGATaactttgt------tgttttttctg----ctTG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I
e caeRem4.Crem_Contig0   2127454 208 -  4500979 I

a score=-3767.000000
s ce10.chrX              5352922 80 + 17718866 TGATTATCGAAAGCTTCAAGTTAGTCCAGTAT-------CCATTC--------TTTTGGATCCAGT----TATTCTTTGCAGTTGACTTCAATTTTTCC
s cb4.chrX              10710126 91 + 21540570 AGAATTCTGGTAT-----ATGCAAATGTGCTCTAACAAACAATTC--GtatgttttttgatttactTTCCTTCtctgaatgaaaaatttttgaaattc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2127662 86 -  4500979 tgatttttgcttttcttgAGTCAAACATGTGC-------CAATTCTTGTCCATTTGCTGACTGA------Tgcttttaataaattattttttgttttcg
i caeRem4.Crem_Contig0  I 208 C 0
e caePb3.Scfld02_0       3633417 6478 +  4147112 I
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=168.000000
s ce10.chrX              5353002 10 + 17718866 ATAGTTTTCT
s cb4.chrX              10710217  4 + 21540570 ----tatt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2127748 10 -  4500979 ctGGTTTTCT
i caeRem4.Crem_Contig0  C 0 I 64
s caePb3.Scfld02_0       3639895 10 +  4147112 atatttttcc
i caePb3.Scfld02_0      I 6478 C 0
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=-3250.000000
s ce10.chrX              5353012 57 + 17718866 TTCTCTACATTTATGCGTCTCTCATGTTTTATTAATGTATGAATCA-----------GGCGCTGATCG
s cb4.chrX              10710221 31 + 21540570 gTCAATATAT-------TCTTTCCAGATTT--------ATGCATCA----------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3639905 57 +  4147112 --------attccCCCATCTGTCCAATTTT--TGAT-CATGTCTCactttgaataaaaacctttgttg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   495235 542 +   823664 I
e caeRem4.Crem_Contig0   2127758 64 -  4500979 I

a score=-1719.000000
s ce10.chrX              5353069  9 + 17718866 ------------TCAACGAAA
s cb4.chrX              10710252  5 + 21540570 ----Aaaac------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2127822 21 -  4500979 tcaaaaaaccgaTCAATGCAA
i caeRem4.Crem_Contig0  I 64 C 0
s caePb3.Scfld02_0       3639962  9 +  4147112 ------------tcaatgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   495235 542 +   823664 I

a score=49557.000000
s ce10.chrX              5353078 533 + 17718866  
s cb4.chrX              10710257 419 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2127843 423 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3639971 448 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   495777 498 +   823664  
i caeJap4.Scaffold18194 I 542 I 803

a score=-2741.000000
s ce10.chrX              5353611 20 + 17718866 CGTTTTGGGA----AGAAATAAGA
s cb4.chrX              10710676 20 + 21540570 catgTTGGCC----ATGCGTTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128266 19 -  4500979 gat-taGATA----CCAAAAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3640419 23 +  4147112 CAG-TTGGAAtagtttgaattgaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   496275 803 +   823664 I

a score=96085.000000
s ce10.chrX              5353631 225 + 17718866 ACTCGGTCACCTTGGTTTGTCTTGGCAGCGAAAAATCCGGTTTGCTCCTTCTTTCCAAAGATGAGCTTCTCCTCGACGCGGGGAACAATGTAGTGAATTTCTTCCAAATCAGCGCCGGTTCCAGGCACCGAATTGATGTCGTTGAACAGAGCAGCAAAACGTTTGAGCTCTACCTCAGTAGCCTGAAATTATAATTTTGTGGTGATTTTAAATAATCCTTGGAGT
s cb4.chrX              10710696 206 + 21540570 ATCCACGAACCTTGATTTGTCTTGGCAGCAAAGAAACCAGTCTGTTCCTTCTTTCCGAAAATCAGTTTCTCCTCGACACGTGGAACAATGTAGTGGACGCCTTCCAGGTCGGCACCGGTACCTGGTACAGATTTGATGTTGGCAAAAAGAGCAGCAAACTTTTTGAGTTCAGCGTCGGTAGCCTGACATT---------TGG-AATTCAGACTTGA---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128285 202 -  4500979 GTAAGGTAACCTTGGTTGGTCTTGGAAGCAAAAAATCCTGTCTGTTCCTTCTTTCCGAAGATTAGCTTCTCCTCGACACGTGGAACGATGTAATGGATGTTCTCAAGATCAGCTCCGGTGCCTGGAACGGAGTTGATGTCGTTGAAGAGAGCCGCAAACTTCTTCAGTTCTTGTTCGGAGGCCTGCAAT--------------ACTTTCAACGtgg---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3640442 207 +  4147112 at----ttaccCTGGTTGGTCTTGGCGGCGAAGAATCCGGTCTGGTCCTTCTTTCCGAAAATCAACTTCTCCTCGACACGTGGGACAATGTAATGGATGTTCTCCAAGTCGGCTCCGGTGCCTGGAACAGAGTTGACGTCGTTGAACAGAGCAGCGAATCTCTTGAGCTCAGCGTCGGAGGCCTGAAAC--------------ATTATCAAATAGCCTTCGAAGT
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18194   497078 200 +   823664 ACCCACCCACCTTTATTAGTTTTAGCGGCAAAGAAGCCGGTCTGCTcctttttgccaaaaatcagctTCTCCTCTACACGTGGAACAATATAGTGAACGTCTTCTAGATCAGCGCCGGTTCCCGGCACCGAGTTAATGTCGTTGAACAGAGCGGCAAACTTTTTGAGCTCAGCATCAGATGCCTGCAAGA-------------GGTGATGAAT------------
i caeJap4.Scaffold18194 I 803 C 0

a score=-4968.000000
s ce10.chrX              5353856 25 + 17718866 TTTAAAAAAGTCattaaaaaattaa
s cb4.chrX              10710902 10 + 21540570 ---------------TCTAATACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128487 19 -  4500979 ------aaaattatttcttttttag
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   497278 14 +   823664 --TTAGAAAAGCGCGG---------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3640649 30 +  4147112 I

a score=52982.000000
s ce10.chrX              5353881 217 + 17718866 aaaaaaaaaaCGTCTTACCCGGAAAGCGTTGGCATCCCCACTTCTAGCCCAAACCGACCCGTCGGATCCGATGATAGCGGCTCTCTTGATGGCTGGGCTCTTTCCGAACAGAAGCTTAATGTAGTCGTCCCAGCCAGACATGTTGTAGGTGTACTGG----TTCTGAAATAAAA-TAATATAGAGAGTAC-------------GTTTGGA-GAGGAACAAA---AAAGAAT---------------------GATGCGGA
s cb4.chrX              10710912 216 + 21540570 ------TGTAGAACTCACTCTGAAAGCGCCCCCGTCATTTGTTCTCGCCCAAATTGATCCATCAGTTCCGATGATAGCGGCTCTCTTGATGGCACTGCTCTTCTGGAGAAGGATATTGATATAATCGTCCCAGCCAGCCAtggt----------ttc----ttctgaaaaaata----------------actttt-------tttccaa-gacGAATGAAACGAAGcgatgagaaaaatgaaagatgaAAAGGTATATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128506 214 -  4500979 ------agaaaaactcACACTAAAAGCGTTGGAATCTCCGGATCTGGCCCATACGGATCCATCCAATCCAATAATGGCAGCTCTCTTGATGGCTGGGCTCTTTCCGAACAGAAGCTTGATGTAGTCGTCCCAACCAGACATTTT--------AGTGG----ttctggaaagaaaagaatgtAAAAAGTGTACTTCtgtatg--tttttga-----aatgaaacgaaaagaT---------------------GGTGGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3640679 224 +  4147112 ATAGAGAAAACAACTCACTTTGAACTCATTGGCATCACCGCTTCTGGCCCACACCGATCCGTCCGATCCGATGATTGCGGCTCTTTTGATAGCAGCGCTTCTTCCGAACAAGAGCTTGACGTAGTCGTCCCAGCCAGACATCTT----------TTgcggtttctgaaaaacagaaaatgttagAGATGTTCTTACGAATAATGTTTTGG-----AATAAAGcggaaaaat---------------------gaggaaag
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18194   497292 213 +   823664 ATGGCGCAAGCCGCTTACCCGGAAAGCATTCGCATCTCCACTTCTAGCCCATACGGATCCATCGTCACCAATGATGGCTGCTCTTTTGATCGCGGCGCTCTTTCCGAACAACAAGTTGATGTAGTCGTTCCAGCCGGACATTGT----ACAGAGCGG----TACTGGAAAGAAT--TGTGTTGTGTGTGG-------------GTGTGAACAATGAATGTACACGAAAGAT---------------------AAGAA---
i caeJap4.Scaffold18194 C 0 I 2555

a score=10464.000000
s ce10.chrX              5354098 46 + 17718866 CGGGAATATGAATCA-------GGACCCCAGGCGTTATGAATCATTTCGGGAA
s cb4.chrX              10711128 49 + 21540570 GGAGCACATGAATCAGAAACAGGG---CCAGCCGTTATGAATCACTTTGGGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128720 39 -  4500979 GAAGAATAGGAATCA-------GG---CCAGCCGTTATGAATCATTTCG----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3640903 43 +  4147112 aaAGAATACGAATCA-------GG---CCATCCGTTATGATTCATCTCGGAAA
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18194   497505 2555 +   823664 I

a score=-1218.000000
s ce10.chrX              5354144 34 + 17718866 GCAGGCGCGAGGGGGAGGGAGAAAAA-------------------------TAAAAAAG
s cb4.chrX              10711177 44 + 21540570 ---------------ATGGAGGAAAATGCTTTTCAGCCTCCCACCACCTCCTCCTCAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128759 36 -  4500979 ----------------TTGAGGAAAAAGCTTTTCAGCCT-------CCTCCTCCACACA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3640946 22 +  4147112 I
e caeJap4.Scaffold18194   497505 2555 +   823664 I

a score=42819.000000
s ce10.chrX              5354178 840 + 17718866  
s cb4.chrX              10711221 855 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2128795 913 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3640968 883 +  4147112  
i caePb3.Scfld02_0      I 22 I 63
e caeJap4.Scaffold18194   497505 2555 +   823664 I

a score=-1527.000000
s ce10.chrX              5355018 36 + 17718866 ----TGTTACTGG--------AGGAAGCAGGGCTGGTAATAAAAATCA
s cb4.chrX              10712076 38 + 21540570 ----TGCAATTAT--TCTAACAAAGAATTAAGtgaataggaaaa----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2129708 47 -  4500979 ACTTGGTAATTGTAATTTAACACAG-ACAAAGCGGCTGAGAAAACTGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3641851 63 +  4147112 I
e caeJap4.Scaffold18194   497505 2555 +   823664 I

a score=-10535.000000
s ce10.chrX              5355054 196 + 17718866 GGTCGTATAAG----------GTTTTT------AGAGAACGATAAAATATTAAAACTAGATTTTTACAA----TTTTAACGGATTTTCAATCAAAATCATATA---------ATATTCTCAAATTAGAAA------------TGCGACTTAAACTT--------------------TGC----CTGACTACTACGTGATAAATGGGAAGAAT--GAGCCGGAACCTCAT---------AGGAAAG----------------------------CGAAGAGCAAAGCAGCAGTGAATTGTG
s cb4.chrX              10712114 155 + 21540570 ---------------------aatttcgaaataagaAGACATTGAAAT---------------TCAA------TCTTAAAATAGTTAGTAAAAA-CACACact-------aaatattttcaacctcTAAA------------TGC--CTCAACTC---------------------TGA-----------CTACGTGATAAA---GAGCAAC---ATCCTGAACTTC-----------GAGAAAA----------------------------CAAAGCGCAA---GTCTGTGAATTGT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2129755 229 -  4500979 AGTATTGAAac----------gtttctgaaacaaaaacattataACAT---------------TTGAGAGTGTGCacaaaatctacaaaaaaaagctgatata-------aaacttttgaaactgttaAA------------GTT--CGGAAATCA--------------------TGAGTTATTGTCATTTACGTGATAAA-ACGAACAGTTTGAGCCGGAACTTCAGGAAACCGAGGAGAAAAGCAGTGNNNNNNNNNNGACTTCAGGAACCGAGGAGAAA---AGCAGTGAATCGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3641914 237 +  4147112 ---AGTCATACGTTAGTTTCTTATCTCGAACACAGAAGACGGTCAAGT----AAACTAACTGGTCAAA-----GCTCGAACGATTACGCAACAGATTTCTACATCTTTCcaagaatctgaaattgtgaaataGCTATCACGTTTT--CCTAAATCGATTGGAAGCAACCAGCAACCTGA------AGCGCTTACGTGATAAA-ACCAATAATTAGAGCCGGAACTTCa----------aggaaaa----------------------------tgaggagaaa---agCAGCGAATCGT-
i caePb3.Scfld02_0      I 63 C 0
e caeJap4.Scaffold18194   497505 2555 +   823664 I

a score=32637.000000
s ce10.chrX              5355250 162 + 17718866 GAAACAGTGCAAACT----ATTTG-----GAAAAGTGGTGAGCGCG------------CGCGCGACACTAAACGGC-AAAAACAGGTGAAT-GTGTGTGTA----------------TATGAGGATGGAGCGATAGCAGCGGTGCCTC----------GGCGCCCGTGGCAG--AATGACAAATGGTCT-------------GC---------------------GTTCGATAGTGATT-----------------GTTCTAGA
s cb4.chrX              10712269 230 + 21540570 GAAACAGTGCAAACTGTTGGTTTGGAAAAGAGAACTGGCGGA-GCGCTCCTGTGCCTCCGCGCGACACTAAACGGCAAAAAACAGTC---TCGTTGATGTGAT--------------GGAGCGGATGGAGCGATAGTGCTG---GCCCAGCAACCGGTGGCACCCGCTGCAGAAAAAGACAAATGGTTG-------------GTCTGTGTACGCGTTTCGGGAAAGTTCTACGGAACTCTGGGTggtattttccaatttcaata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2129984 164 -  4500979 GGAACAGTGCAAACT----GTTTGTGGGAGAAAAGTGGCGAG----------------CGCGCGACACTAAACGGC-AAAAACAGTCGAATAGTGTATGTG----------------TGTGCGGATGGAGCGATAGCGCCGTGCGCCCCG--------GGCACCCGTGGCAG--AATGACGAATGGTTT-------------GT---------------------GTTCCATAGAAT-------------------GTTCTAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3642151 148 +  4147112 GAAACAGTGCAAAC-----GGTTGGGAGAGAAAAGTGGCGCG----------------CGCGCGACTCTAAACGGC-AAAAACAGGCGAATAGCGTATGTG--------------------TGGATGGAGCGATAGCGATGGCGCCCCCG--------GGCCCCAGTGGCAG--ATTGACAAA---TCT-------------GT---------------------GTTC---------------------------TTTCTAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   500060 183 +   823664 GAAACAGTGCAAACG----GTAGGTGGGAGAAAAGTGGCG-------------------------------ACGGC-AAAAACAAGTGAATTGTGTGTACGGTGAGACAAAAAGTGAGAGAAAGAGAAGGAGAAAGCGCGGTTAGACTGGCGC-----GGCGCCCGTGACAG--AATGACAAATGATTTCGAATAGCACGTAGC---------------------GTTCCTCGCAAAAT-----------------GTTCTAGa
i caeJap4.Scaffold18194 I 2555 I 826

a score=-764.000000
s ce10.chrX              5355412 448 + 17718866  
s cb4.chrX              10712499 718 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2130148 546 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3642299 546 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   500243 826 +   823664 I

a score=220832.000000
s ce10.chrX              5355860 413 + 17718866 GAGATCATTTTGAATGGAGGGGGATGTCATTTTTGTTGCCAAGAATTTCAAGTAGTTTTTCGGACATGAAGAACGGTCGCTCAAGGCTTCCATCGTTTTGTTCGCTGTCTTCCACT-GAAAATTGAGAATGTTTA-GGGAAC------------TGTCGAAAAAAAAAATCAAAT--TC--ATCAAAGTGGTTTGCACTTACGGAAGCAAATGAACGTTGTATCCACAGCCATTTCGTAGACATCAAAGAACAGGTCGGCCATGAAGTAACTGCCTGAAATGGGATTGT---TTGTTTATTTTT-TGTCGAAAAATGACTGCTCAAAGTATTACCAATGACCACAATGACAATTGGCACAAAATAGTAGTAGAGATCGACTTTCGGAACACCTTCAACAACCCATCGTCCGGAAAAGTAGTAGAAACTGAGAATG
s cb4.chrX              10713217 391 + 21540570 gagaTCATTTTGTGTGGAGAGGAATTTCGTTTTTGGTGCCAAGAATCTCCAGTAGCTTCTGCGACATGAAGTAAGGGCGTTCAAGGCTTCCGTCATTTTGTTCACTGTCCTCCactagaaaa--------aatgaggaaaat------------t---------aGAA--CAAAT--TCGGATAAAAGTGGTTTGCACTTACGGAAACAAATGAAAGTAGTATCGACGGCCATTTCGTAGACATCAAAGAACAAGTCGGCCATGAAGTAACTTCCTGAAATAGGCagt----ttgtttgttttt---ttggcaCAAAGAA----ATGGTCTTACCAATGACAACAATGACGATTGGCACAAAGTAGTAGTAGAGATCGACTTTTGGCACTCCTTCGACAACCCAACGTCCAGAGAAGTAGTAGAAACTGAGGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2130694 400 -  4500979 GAGATCATTTCGTATGGAGAGGGATTTCATTTTTGGTGCCAAGAATCTCAAGAAGCTTCTCGGACATGAAATATGGTCGTTCCAAACTTCCGTCGTTTTGTTCACTGTCTTCcactagaaaa--------aatta-gaaaat------------t---------agaaacCGAACGATTTGAC-AAAGTGGTTTGCACTTACGGAAACAAATGAAAGTAGTATCGACGGCCATTTCATAGACATCAAAGAACAGGTCGGCCATGAAGTAACTTCCTGAAATGGGagaa----ttgtttgtttttgtgttgaaataaGTAGGATTAGGGTCTTACCAATGACAACAATGACAATTGGCACAAAGTAGTAGTAGAGTTCGACTTTTGGAACACCTTCAACGACCCATCGACCAGAAAAGTAGTAGAAACTGAGGATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3642845 388 +  4147112 GAGATCATTTTGTATGGAGAGGAATTTCGTTTTTGGTGCCAAGAATCTCAAGAAGTTTCTCAGACATGAAGTATGGCCGTTCCAAGCTACCATCGTTTTGTTCACTGtcttccact-gaaaa--------aatta-acgaaT------------T---------AGAG--CGAAA--CC-----GAAGTGGTTTGCACTTACGGAAGCAAATGAAAGTGGTATCGACAGCCATTTCGTAGACATCAAAGAACAGGTCAGCCATGAAGTAACTTCCTAAAATAGACaaatttgttgtttgtttTA---TTGGAAATGGATA----GTGATCTTACCAATGACAACAATGACGATTGGCACGAAGTAGTAGTAGAGATCGACCTTTGGAACACCTTCAACCACCCATCGACCAGAGAAGTAGTAGAAACTGAGGATa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   501069 390 +   823664 GAGATCATTTCGAGTGGAGAGGAATTTCGTTTTTGTTGCCGAGAATTTCGAGAAGCTTCTCCGACATGAAATACGGCCGTTCTAAACTGCCGTCGTTTTGTTCACTGTCTTCcact-aaaaa-----------ta-gaaaatacgTTTCACGGAT---------AAAG--GAAAA--TA-----GCATCGG--TGCACTTACGGAAGCAAATGAAAGTGGTATCGACAGCCATTTCGTACACATCAAAGAACAAATCCGCCATAAAGTAGCTTcctgaaacagaaaaatacacTCTTTGCTGTT---T---------ATAACTCATATTCTTACCTATCACAACAATGACAATTGGGACAAAGTAATAGTACAAATCCACCTTGGGAACTCCTTCCACAACCCATTTGCCCGAGAAGTAGTAGAAACTCAGAATG
i caeJap4.Scaffold18194 I 826 C 0

a score=77.000000
s ce10.chrX              5356273 22 + 17718866 CCTGAAAAATAAACGCATTTTT
s caeRem4.Crem_Contig0   2131094 19 -  4500979 Cctgaaa--taaat-cattttt
i caeRem4.Crem_Contig0  C 0 I 55
s caePb3.Scfld02_0       3643233  7 +  4147112 cctgaaa---------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   501459 21 +   823664 CCTTAAACATAAGA-TACTTTC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10713608  0 + 21540570 C

a score=308.000000
s ce10.chrX              5356295 11 + 17718866 CATTTAATGTT
s caeJap4.Scaffold18194   501480 11 +   823664 TGCTTTATGCT
i caeJap4.Scaffold18194 C 0 I 9
e caePb3.Scfld02_0       3643240  0 +  4147112 C
e cb4.chrX              10713608  0 + 21540570 C
e caeRem4.Crem_Contig0   2131113 55 -  4500979 I

a score=-5842.000000
s ce10.chrX              5356306 612 + 17718866  
s caePb3.Scfld02_0       3643240 313 +  4147112  
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold18194   501491   9 +   823664 I
e cb4.chrX              10713608   0 + 21540570 C
e caeRem4.Crem_Contig0   2131113  55 -  4500979 I

a score=0.000000
s ce10.chrX              5356918 36 + 17718866 AATAAAATGTTATTCTTTATAGAAATTGTGTTTTTC
e caePb3.Scfld02_0       3643553 37 +  4147112 I
e caeJap4.Scaffold18194   501491  9 +   823664 I
e cb4.chrX              10713608  0 + 21540570 C
e caeRem4.Crem_Contig0   2131113 55 -  4500979 I

a score=168.000000
s ce10.chrX              5356954 4 + 17718866 AGGT
s caeRem4.Crem_Contig0   2131168 4 -  4500979 agtt
i caeRem4.Crem_Contig0  I 55 C 0
e caePb3.Scfld02_0       3643553 37 +  4147112 I
e caeJap4.Scaffold18194   501491 9 +   823664 I
e cb4.chrX              10713608 0 + 21540570 C

a score=-263.000000
s ce10.chrX              5356958 3 + 17718866 TTT
s caeRem4.Crem_Contig0   2131172 3 -  4500979 taa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   501500 3 +   823664 TCC
i caeJap4.Scaffold18194 I 9 C 0
e caePb3.Scfld02_0       3643553 37 +  4147112 I
e cb4.chrX              10713608 0 + 21540570 C

a score=1660.000000
s ce10.chrX              5356961 8 + 17718866 AGTACTCA
s caeRem4.Crem_Contig0   2131175 8 -  4500979 aatgcTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3643590 8 +  4147112 AAAACTTA
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold18194   501503 8 +   823664 ATTACTAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10713608 0 + 21540570 C

a score=98111.000000
s ce10.chrX              5356969 164 + 17718866 CCCATTCCAAGTGTGATCATGGACTTTCCAAGGAATAAAAGGATTCCAGCGACCTTGTGAACTACGACGGTTCTCACAATGTTTCTAGTGATCAGTAAGAATGAATCTTTTGCTGATGAGAAGAAGTTCTTGCCGTAAATTGCAATCTGAAAATATTTAGATAA---
s cb4.chrX              10713608 160 + 21540570 CCCATTCCAAGAGTGATCATCGCTTTTCCAAGGAACAGAAGAATTCCAGCCACTTTGTGGACGACCACAGTTCTGACTATATTACGAGTGATGAGCAGGAATGAGTCTTTTGCCGACGAGAAGAAGTTCTTTCCATAAAtcgcaatctgaaaaaa----gatca---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2131183 159 -  4500979 CCCATTCCAAGAGTGATCATAGCCTTTCCAAGGAACAGAAGTATTCCAGCAACCTTGTGGACCACTACAGTTCTCACAATATTCCTTGTTATAAGCAAGAATGAGTCTTTGGCGGATGAGAAGAAGTTCTTTCCGTAGAtagcaatctgaaaaaa-----acca---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3643598 160 +  4147112 CCCATTCCAAGAGTGATCATAGCCTTTCccaggaaaagaagaattccaGCAACTTTGTGCACTACTACAGTCCGAACAATGTTACGAGTGATGAGTAGGAATGAGTCCTTAGCCGACGAGAAGAAGTTCTTTCCGTAAATagcaatctgaaaaaa----cataa---
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18194   501511 163 +   823664 CCCATTCCAACAGTAATCATCGCTTTTCCAAGGAAGAGAAGAATACCAGCGACTTTATGGATGACTACAGTACGGACGATGTTTCGAGTGATGAGCATAAAAGAGTCTTTGGCCGATGAGAAGAAATTCTTTCCGTAAATGGCAATCTGTAACAA----TATTATAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-4786.000000
s ce10.chrX              5357133 18 + 17718866 ATTCAGATT--AGGATAAGT
s cb4.chrX              10713768 19 + 21540570 CTTTATTTTCCATGGAGAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2131342 11 -  4500979 tt---------atgAACACT
i caeRem4.Crem_Contig0  C 0 I 2
s caeJap4.Scaffold18194   501674  4 +   823664 ---------------ATAC-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3643758 17 +  4147112 I

a score=377982.000000
s ce10.chrX              5357151 624 + 17718866  
s cb4.chrX              10713787 620 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2131355 623 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3643775 624 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194   501678 628 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1594.000000
s ce10.chrX              5357775 19 + 17718866 GGAA---------AACATTTAATTGGTA
s cb4.chrX              10714407 19 + 21540570 GAAA---------TTAAGTTGATTTGTA
i cb4.chrX              C 0 I 901
s caeRem4.Crem_Contig0   2131978 12 -  4500979 AAAA---------TACAATTA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3644399 24 +  4147112 GAAATAATATGAGTTCAGTTGGTT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   502306  0 +   823664 C

a score=-2501.000000
s ce10.chrX              5357794 57 + 17718866 -----CAGATATGAAGGAGCAGGTTCAATCAGTGGTTCTGTTCATTAAGCTGTTATCTTTGG
s caeRem4.Crem_Contig0   2131990 21 -  4500979 -----TTGct----------------------tagttttc--------------atttttgg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3644423 51 +  4147112 TATAATTACTGTGCAGAGCTAAGCGTAAATAGTAGGTTCCC-----------ATGTCTTTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   502306  0 +   823664 C
e cb4.chrX              10714426 901 + 21540570 I

a score=-205.000000
s ce10.chrX              5357851 48 + 17718866 CTTTTGG--CACTAGCTTTTTACCTAAAACTCAACAACTATTGATCAGAA
s caePb3.Scfld02_0       3644474 48 +  4147112 CTTCATgctcacaaaattttgagttagTA--TAATGTCGATTCATGACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   502306  0 +   823664 C
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132011  0 -  4500979 C

a score=-4779.000000
s ce10.chrX              5357899 70 + 17718866 GTTTGCAAAAATTTGACGAAAATTGAGTTAGAATTAGGTTCAACTTGGGCG----TAGAATATGCCAACAGGTC
s caePb3.Scfld02_0       3644522 59 +  4147112 ATTTTCG-------GATGAAAACTCA--------TAGCGTTAGCCCGGATGATATTGTTATATGGCGAACAGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   502306 22 +   823664 ------------------------------------------GTTTATAAA----TAGtataaatcaa------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132011  0 -  4500979 C

a score=-323.000000
s ce10.chrX              5357969 9 + 17718866 AAAATCTTG
s caeRem4.Crem_Contig0   2132011 9 -  4500979 aaggTGTTG
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3644581 9 +  4147112 GCAGTCTTG
i caePb3.Scfld02_0      C 0 I 85
s caeJap4.Scaffold18194   502328 4 +   823664 aaaa-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10714426 901 + 21540570 I

a score=0.000000
s ce10.chrX              5357978 61 + 17718866 CCCAAGTTTTGCCACAATTTTGCCAACTTTTGACCGAATTTATTATTCTTATCCAACGTTG
e caePb3.Scfld02_0       3644590 85 +  4147112 I
e caeJap4.Scaffold18194   502332  0 +   823664 C
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132020  1 -  4500979 I

a score=-1367.000000
s ce10.chrX              5358039 57 + 17718866 GACGAGAAGCTAGGGCCAAATGGCGAGTTTAGATGACTGTGGTCTACACATAGCTTC
s caeJap4.Scaffold18194   502332  7 +   823664 ------------------------------agatAAC--------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3644590 85 +  4147112 I
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132020  1 -  4500979 I

a score=31.000000
s ce10.chrX              5358096 5 + 17718866 AAGGA
s caePb3.Scfld02_0       3644675 5 +  4147112 agaaa
i caePb3.Scfld02_0      I 85 I 1
s caeJap4.Scaffold18194   502339 1 +   823664 ----A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132020 1 -  4500979 I

a score=-460.000000
s ce10.chrX              5358101 1 + 17718866 -C
s caeJap4.Scaffold18194   502340 1 +   823664 A-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3644680 1 +  4147112 I
e cb4.chrX              10714426 901 + 21540570 I
e caeRem4.Crem_Contig0   2132020 1 -  4500979 I

a score=358602.000000
s ce10.chrX              5358102 637 + 17718866  
s cb4.chrX              10715327 639 + 21540570  
i cb4.chrX              I 901 C 0
s caeRem4.Crem_Contig0   2132021 635 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3644681 642 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   502341 636 +   823664  
i caeJap4.Scaffold18194 C 0 I 838

a score=-198.000000
s ce10.chrX              5358739 4 + 17718866 ATTG
s cb4.chrX              10715966 4 + 21540570 TTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2132656 4 -  4500979 TTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3645323 4 +  4147112 TTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   502977 838 +   823664 I

a score=881.000000
s ce10.chrX              5358743 13 + 17718866 ATTTGTCGAATAA-
s cb4.chrX              10715970 12 + 21540570 ATTTATG-AGTAC-
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2132660 12 -  4500979 ATTGCTC-AAAAC-
i caeRem4.Crem_Contig0  C 0 I 22
s caePb3.Scfld02_0       3645327 12 +  4147112 ATTGCTC-AGTAA-
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   503815 13 +   823664 ATTTCTC-AAAACA
i caeJap4.Scaffold18194 I 838 C 0

a score=-2857.000000
s ce10.chrX              5358756 18 + 17718866 AATCAAATAACAAAATGG
s cb4.chrX              10715987 15 + 21540570 GCTC---TAACACAGTGG
i cb4.chrX              I 5 I 2
s caePb3.Scfld02_0       3645342 11 +  4147112 GTT-------CATAGTTA
i caePb3.Scfld02_0      I 3 I 9
s caeJap4.Scaffold18194   503828 16 +   823664 CCTCAAAAACTAAAGC--
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2132672 22 -  4500979 I

a score=162189.000000
s ce10.chrX              5358774 294 + 17718866 TTACCTGGAACTGATTTCACAGTGTAAGACACACATTTTCCTCTCTGCACGAGATTTTGCAGGGCTTGGAATGTGGTAACAGTTGTTTTATCAACATCATCCGTACAGTACACGACACTTTTCAT----------------------------------------------------------TTTGTTCTGAATTTCCGATACAGACGCTGTACGGAGTTGCAGGTAAGAAAAGTAGGTTGATGGACATTCTTTGACGCAAAGTTGTGTGGTTTGACATCCACCAAGAGCAGTTGCATAGGAGATGCATTTGGTGAGGTCGAAGTAGAAGAGATAGGGGCGCTTGCTAAAA
s cb4.chrX              10716004 294 + 21540570 TTACCAGGCACAGACTTGACCGTATAGGACACACACTTTCCTCGCTGTACAAGACTTTGGAGAGCAACGAAAGTGGTGACCGTAGACTTATCAACATCGTCAGTGCAAtaaactacatttttcat----------------------------------------------------------cTTATTTTGAATCTCTGCGGCAGATGCTGTTCGAAGTTGGAGGTAGGAAAAGTACTGTGACGGACACTCTTCCACACAAATTTGAGTCGTTTGGCATCCTCCGAGAGCCGTCGCATATGAGATACATTTGGTGAGATCGAAGTAGAACAGATATGGCCGCTTGCTGAAA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2132694 294 -  4500979 TTACCAGGTACAGACTTGACAGTGTAAGACACACATTTTCCTTTCTGGACAAGAGCTTGTAGCGCTTGGAAAGTGGTGACCGAGGCTTTGTCGACATCGTCAGTACAATAAACCACACTTTTCAT----------------------------------------------------------CTTTGCTTGAATCTCGGAAGCCGATGCGGTTCGAAGCTGGAGGTACGAGAAGTACGTTGATGGACACTCCTCAACACAGATTTGAGTAGTTTGACATCCTCCGAGAGCTGTGGCGTATGAGATACATTTGGTGAGATCGAAGTAGAAGAGGTATGGGCGTTTGCTGTAA
i caeRem4.Crem_Contig0  I 22 C 0
s caePb3.Scfld02_0       3645362 293 +  4147112 TTACCTGGAACAGATTTCACTGTGTACGATACACATTTTCCTCGTTGAACCAAGCTCTGAAGAGCTGCGAAGGTAGTCACTGAGGTTTTGTCAACGTCATCCGTGCAGTACACTACGTTCTTCAT----------------------------------------------------------TTTACTCTGAATTTCGGCGGCCGATGCAGTTCGGAGTTGAAGATACGAGAAGTACTGAGACGGGCATTCTTCGACGCAAATTTGAGTGGTTTGACATCCTCCGAGAGCAGTTGCGTATGAGATACATTTGGTGAGATCGAAGTAGAAGAGGTATGGCCgtttgctgaa-
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18194   503844 352 +   823664 TTACCAGGAATAGACTTCACAGTGTACGAGGTACATTTTCCTTGTTGAACAAGACTTTGAAGAGCCGAGAAAGTAGTCACGGCTGATTTATCAACGTCGTCCGTACAGTATACCACGCTTTTCATCTGTTAACACAACTATTGTATTCTCTTGTTCTTTTTCAATCCTAATTCTATTATTCACCTGTTTCTGAATTTCGCCAGCTGAAGCTGTGCGCAGTTGGAGGTAAGAAAAATATTGCGATGGGCATTCTTCGACGCAGATTTGTGTAGTTTGGCATCCTCCCAGCGCAGTGGTGTAAGAGATGCATTTAGTGAGATCAAAGTAGAAAAGATATGGTCGTTTGCTAAAG
i caeJap4.Scaffold18194 C 0 C 0

a score=-11886.000000
s ce10.chrX              5359068 89 + 17718866 TAAATGCAGATGTAGATAATGAGCATATTGCGTTATACTTTTTAATTCCCTATGAGTTTCGATAAAAACTCATTTATACATTATTTCAT
s caeRem4.Crem_Contig0   2132988 10 -  4500979 -----------------------------------TTATTC---ATTG-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3645655 47 +  4147112 -----------------aattattatgatGAGTTATTATTCTCGAGTGC---------GCGATGTAATGTCGT----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   504196 16 +   823664 ---------------------------TTGTACAGTGATTCCT----------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10716298  0 + 21540570 C

a score=533.000000
s ce10.chrX              5359157 11 + 17718866 CGCATGAACTT
s caePb3.Scfld02_0       3645702  9 +  4147112 --CATGAATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   504212  0 +   823664 C
e cb4.chrX              10716298  0 + 21540570 C
e caeRem4.Crem_Contig0   2132998  0 -  4500979 C

a score=0.000000
s ce10.chrX              5359168 12 + 17718866 TCCTTCTGTTCT
e caePb3.Scfld02_0       3645711  0 +  4147112 C
e caeJap4.Scaffold18194   504212  0 +   823664 C
e cb4.chrX              10716298  0 + 21540570 C
e caeRem4.Crem_Contig0   2132998  0 -  4500979 C

a score=-5336.000000
s ce10.chrX              5359180 123 + 17718866 AAATATTTGTTCGCATAACTAACTACTTTTTGCCTTCTTTGCATATTATAAATCTTATATCAATTTGGAAAATGAGATGAATGCAAAAAAAAATAACTTAGCACGTTCAGTAAGACTTTTTCA
s cb4.chrX              10716298  29 + 21540570 ATGTCTTTGttggt-----------------------------------------------------gaaaatttg-------------aaaaaa----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2132998  22 -  4500979 ----ATTGGTTTGC-----------------------------------------------------Gaatat----------------aaaata----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3645711   0 +  4147112 C
e caeJap4.Scaffold18194   504212   0 +   823664 C

a score=4274.000000
s ce10.chrX              5359303 53 + 17718866 AGATTCATCAGAGATGCAATGTTAAAATTACCTGAAATTGTAGGATCCTTCGA
s cb4.chrX              10716327 32 + 21540570 ---------------------ctgaaggTACCTGAAGTTATAGTATCCTCCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2133020 32 -  4500979 ---------------------taaaatttaccTCAAATTGTAGTAACCGTCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3645711 36 +  4147112 -----------AGAT------TAATTAGTACCTGAAGTTGTAAAATCCGTCCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   504212  0 +   823664 C

a score=79908.000000
s ce10.chrX              5359356 182 + 17718866 GGTTGACTCCACATCGTCTGAACTCCGAATCCGTCGGATAGATGAGTCTTTGTGGATCGCCCCACATAATTCCAAAGCCGGCAACAACGACCCATCCACAAAGGAAGACGAAGAACAGAAAGCAGCAGAAGACATCTGTGCATCCTCTGAAAATAATA-------------TTATTA------------------------------------------------GTTGAAAATGTATATATT
s cb4.chrX              10716359 227 + 21540570 GATCGACACCACATCGTCTGAATTCCGAGTCGGTTGGATAGATGAGTCGTTGCGGATCTCCCCACATGATACCCAAGCTGGCAACGACAACCCATCCGCAGAGGAAAACGAAGAACAGGAAGCAGCAGAAGACATCCGTACatcctctgaaaataaaag----tgGTTAGCTTATAAG------AATTGTAGAGCAAAAGTTAGCCGAGCAG------GTGCAACTTTTGCCGGTTATTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2133052 183 -  4500979 GATTGACTCcacatcttctgaattctgaatcagttgGGTAGATAAGTCGCTGTGGATCTCCCCACATGACTCCCAAGCAGGCGACGATGACCCATCCGACGATAAAGACGAAGAACAGGAAGCAGCAGAAGACATCCGTACAGCCTCTGAAATTTAAGA----TTGTCA--TTataa------------------------------------------------tttca------atgtttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3645747 180 +  4147112 GGGAGACTCcacatcttctgaattcagaatccGTTGGGTATATGAGCCGTTGCGGGTCTCCCCACATAACTCCGAGCGTGGCGACAACACCCCATCCACAAAGGAAGACGAAGAACAGAAAGCAGCAGAAGACATCAGTACAGCCtctgaaatattcaa----ttgatt--ttattg------------------------------------------------TT---------ATACATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   504212 241 +   823664 GATTGACTCCACACCGTCGGAATTCAGAGTCGGTTGGGTAGATTAGCCTTTGGGGATCTCCCCACATTATTCCAAAGGCTGCGACCACGACCCATCCACAGAGAAAGACAAAGAATAGGAAACAGCAGAAGACGTCAGTGCAGCCTCtgaaaatacatacattttttca--ttgtttgcTGGGTAAACTTGGACTAAAATACATCCAATTAgtattttttactattttatttatttgtatatt
i caeJap4.Scaffold18194 C 0 I 108

a score=128414.000000
s ce10.chrX              5359538 929 + 17718866  
s cb4.chrX              10716586 918 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2133235 934 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3645927 920 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   504561 883 +   823664  
i caeJap4.Scaffold18194 I 108 I 54

a score=2025.000000
s ce10.chrX              5360467 61 + 17718866 -GATTGCATCAGAGATGGAAAACGTTTACCTAACCTACTGCATGATTAAATCT--ATTATTTAT
s cb4.chrX              10717504 44 + 21540570 -GAATGTCC----------GAAAGTTTACTT---------TATGATAAAATCTAAAAGGTGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2134169 38 -  4500979 -GAGTGTAC-----------AAAGTTTTCCT---------TTTGATAAAATCTAGAAGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3646847 40 +  4147112 TGTATGTCT----------AAGCGTTTACCT---------TGTGATAAAATCTTGATGA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   505444 54 +   823664 I

a score=30665.000000
s ce10.chrX              5360528 585 + 17718866  
s cb4.chrX              10717548 579 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2134207 566 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3646887 605 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   505498 552 +   823664  
i caeJap4.Scaffold18194 I 54 I 633

a score=-30939.000000
s ce10.chrX              5361113 515 + 17718866  
s cb4.chrX              10718127 665 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2134773 299 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3647492 430 +  4147112  
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold18194   506050 633 +   823664 I

a score=-2472.000000
s ce10.chrX              5361628 20 + 17718866 AA------------------------GAGGTACAAATAAGTACC
s cb4.chrX              10718792 44 + 21540570 AATTTCATGACATTTTAAAATCATTCATGACATTTAAAGATTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2135072 21 -  4500979 AAT-----------------------AAGACATTGCAGGAAGCG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3647922 20 +  4147112 I
e caeJap4.Scaffold18194   506050 633 +   823664 I

a score=-19338.000000
s ce10.chrX              5361648  92 + 17718866 ----------------AAATTTGG-------------------------TAAAATTCAAAATTCAACTCACTGAAAAAGATTTCAA-------AATTGAAAAAAATA----TTATTATACAATTTCTGTCA-----CAGAATA--------------------AAAAAT---
s cb4.chrX              10718836 153 + 21540570 TGACATATTTAAATCAATACGTGAGATTTCAGTTTtcgcaattttgattttcgttaTAAAGTCAAGT----------CGAACTCAGTGCATtaaatctgagaaaatttttattcttattttttgtttgt--acAGATACTGTAA----CATTCTAATTCTACCAAAAAT---
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   2135093  69 -  4500979 CAACTT------ATCAACAAATTA------------------------TTccgcttcaaa------------------aaattccg---aataaattgaaaagaaat-----------------------------caatgta--------------------aaaagt---
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3647942 122 +  4147112 ----------------AGAAGTGG-------------------------TCAgcattgaaattcaatat-ttgtACATGTTCTCAG---TATTTGTTGAAGCAAAAA-----TGTTATCTGATGTTTGCGAATCGCCAAGTTAACTACCTTTCCccgtttagaaaaaaaaag
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold18194   506050 633 +   823664 I

a score=-2904.000000
s ce10.chrX              5361740 27 + 17718866 -TTTG-----------------CAACTGGGGGTGCTCCCACAACT
s caeRem4.Crem_Contig0   2135163  4 -  4500979 -tttg----------------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3648064 41 +  4147112 ttttagcaTATTTCAATTCCTAAAACT----TTTCTCTCGGAACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   506050 633 +   823664 I
e cb4.chrX              10718989 51 + 21540570 I

a score=-5209.000000
s ce10.chrX              5361767 30 + 17718866 AATTAAAATAGTT------------------------ATTTTCAAAAAATTGAG
s cb4.chrX              10719040 54 + 21540570 agttCGAATAGTTCCTATACACCCCAAAGAATCCAGTTCTATAAGCAATTCGAA
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig0   2135167  6 -  4500979 -------atagtt-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3648105 39 +  4147112 CATAAGATCAGTT---------------CAAAACATTTCCCTGATAATCCCCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   506050 633 +   823664 I

a score=49554.000000
s ce10.chrX              5361797 485 + 17718866  
s cb4.chrX              10719094 526 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2135173 462 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3648144 472 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   506683 468 +   823664  
i caeJap4.Scaffold18194 I 633 I 1160

a score=-6351.000000
s ce10.chrX              5362282 45 + 17718866 TG----------------------------AAATTGGGAAAACGAAGTCGCAAAGTCTGCTAGGTACGCAAAA--
s cb4.chrX              10719620 45 + 21540570 TG----------------Aatcttatttttaaatttaaaaaaaagagaaa-aa-----------tacgtaaaa--
i cb4.chrX              C 0 I 90
s caeRem4.Crem_Contig0   2135635 55 -  4500979 TGTTAA-------TGAGAAATTCGcaatttaaattaaaaataaaaacaagtaa-----------CATGTGAAA--
i caeRem4.Crem_Contig0  C 0 I 21
s caePb3.Scfld02_0       3648616 69 +  4147112 tgataaaatcatgtgaaaaact---gatgaaaatgaatgataaaaactaa-aacgaaaac--ggcatatgaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I

a score=145.000000
s ce10.chrX              5362327 32 + 17718866 ----TGTAA---------ATTATCTGGCTTCT-TTGAACATTCTAG
s caeRem4.Crem_Contig0   2135711 26 -  4500979 ----CGTAA---------------TGATTTCTATAGAAT-TCCAAG
i caeRem4.Crem_Contig0  I 21 I 2
s caePb3.Scfld02_0       3648685 46 +  4147112 tttccatAATTACGTTTTGCCAGCTAATCTCTATGGAATATTCTAG
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719665 90 + 21540570 I

a score=19502.000000
s ce10.chrX              5362359 129 + 17718866 AAAAGAAATCCTACAAG-TTTATTTTT------------------------GTAGTGGGGAAACCTCAGAATTCTT----TTCTTCTCGTAATGATTTTATGAGGCAAAAAGGATAGGATTTC----GATGAAGGTCG--------GTTA----AGAGAAACAAGTTCGAACAA
s cb4.chrX              10719755 156 + 21540570 --aaaaaaaaacttgatttttgtgttt-----ccTGATGAAGgtaag----aagaggaaaaaatctcagaaatctt-TCTTTCTTCCCATGATGGTTTTATGAGGCAAA------AGAGATTCCAAAAGGGAGGGTCGTTGTTGGTGGTATTTGGAGGAAACAAGTATGAACAA
i cb4.chrX              I 90 I 340
s caeRem4.Crem_Contig0   2135739 149 -  4500979 --GGaagaaaatataagttttcttttt-----ccttcaaaacacACGCGTTAGATTGAGGGAATCTtagaaatctt---ctttttcccataATGATTTTATGAGGCAAA------AGGAATCC----ATTGAAGGTCGTCATTGGTGGCA-----AGAAAACAAGTTTGAAGGA
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3648732 145 +  4147112 AGGAGAATACAtacaagtttttgttttgttcacCT----------------CGATTGAGGGATTCTcagatctcttttttctcttccaatgaTGATTTTATGAGGCAGA------GGAATTTC----TTTGAAGGTCGCCATTGGTGGCA---GAGGAAAACAAGTTTAGAGTA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I

a score=-5483.000000
s ce10.chrX              5362488 181 + 17718866 AGACGTATA-----TAGCTCGTGAAA------ACATT-TTTCAGAAACCATAGAATGAT--CAAAATGACTTTTGAATGTTCAAAAACTTCACTTAGCACAAAAAACTAGTTGTTAAG-----TGTTTATTTTATACCAATAATTAACGAGATTGTGAGTCATTT--AACGTTTGAAAACGATTGTGGTTCCAAATTCATTG
s caeRem4.Crem_Contig0   2135888 185 -  4500979 AGGTATTTGGTATTTAGCTCATGTTCatctttgttttgtttcagttaC-----AATGTTTGCCGAACGTGTcgagaagtttcaaaaagttcatgtgTCAGTGA-----TATTGTTAAGAGAACTGGTTCAAGTGta-----gttgaaaaaatgcaagaaTGTTTTTAAACATTTGGTA--CATCGTTATGTCAAAGTTATTG
i caeRem4.Crem_Contig0  C 0 I 13
s caePb3.Scfld02_0       3648877 131 +  4147112 AGGTATCTGG----TAGCTc-tgttc-tttttatttt-tttcagtgtc-----aatGTTTGCCGAACGCTTGACTAA------------TCAT---------------TAGTGTCAAG-----TAGTTC-----------------AACAAGGTATCAGTGGTTTGGAACAAGTCTAA--GGTTTCCATGTCTA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I

a score=-547.000000
s ce10.chrX              5362669 36 + 17718866 TAAAAGTGGAGTGTCAGTTGTAGGGATTTTGCTTCA
s caePb3.Scfld02_0       3649008 36 +  4147112 AAATACTTTGACATGACGTGTTGAATTACCGTataa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I
e caeRem4.Crem_Contig0   2136073 13 -  4500979 I

a score=-3532.000000
s ce10.chrX              5362705 125 + 17718866 AATTCCTACAAATAGCTCGGAAAAAATCCGCGG--------GACGATAATTCCACAAAGAT---------------TTTTAACTGCATTATTTTTAATTGACTTTTGTTGTTTT---AATTTTTTGTTGT------TTTGTGGAACGTT--------CGTTTCAG
s caeRem4.Crem_Contig0   2136086  91 -  4500979 agtttttaaaattagaaCCGAAGTTCTTCCCGG--------------GAGTTAATAAATAG---------------TTC--------CTATTCCTAATTAGT---------------TGTTTTCCCAGAC-------------AAGGTT---------ATTCCAA
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0       3649044 157 +  4147112 aaattctcaatgtAGACACAAAATAATGCACAGTTTGAAACAACGGtggtttgaaaaacaaaaacgtttcatgtttttc--------atatttttgatttatgtgAAATggtttctgtatttttcatgATATCCTATAAGTGAAAAGTTGCACAGCACATTTTAG
i caePb3.Scfld02_0      C 0 I 184
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I

a score=-294.000000
s ce10.chrX              5362830 65 + 17718866 CTAATCCGGATTCCCAAACAGAATTTTAATTACGCTATTTTATTGTTCAGGACCATTTTGGGTCA
s caeRem4.Crem_Contig0   2136177 40 -  4500979 CTCCATCG--TTTTCAG----------AATTACGCTTCT-------------CCAATATGGCTCA
i caeRem4.Crem_Contig0  C 0 I 61
e caePb3.Scfld02_0       3649201 184 +  4147112 I
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I

a score=0.000000
s ce10.chrX              5362895 119 + 17718866 AATAAGCCCAGAAACGCCAATGCCCTTAAAAATATTTCTGTGTTCAATTTTTATTTCTCATTTGAAAATTCAACTTCCGCTTTGAATTACGCGAACTTTTTTTTTACCACCATTAGTAA
e caePb3.Scfld02_0       3649201 184 +  4147112 I
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I
e caeRem4.Crem_Contig0   2136217  61 -  4500979 I

a score=25.000000
s ce10.chrX              5363014 30 + 17718866 TGTTTCTTTTGAAGTTGTGATTTCATAGAT
s caePb3.Scfld02_0       3649385 26 +  4147112 TGTCTTTTTT---ATCGTTAACACATA-CT
i caePb3.Scfld02_0      I 184 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I
e caeRem4.Crem_Contig0   2136217 61 -  4500979 I

a score=-6735.000000
s ce10.chrX              5363044 115 + 17718866 AATTATAACTTTCAGAGATAATACTTCC-----AATAGTT-CGTTTTTTTTT------CAGA-----AC-----TAATTGGAAAAAAACCCTGAACTCTAATATT--------------------AGTAACGCCACCACACCAAATCAA---------AAAAT--AAA
s caeRem4.Crem_Contig0   2136278  93 -  4500979 ---------AATCAGAACTTGTG----------GAAAACGTCACACGTTGAA------AAGAAATGCAC-----ACATTTCGAAAGA------------GATATTC-------------------ATAAAT---ACCTCAACTGGTGAA---------GGAAG--AAA
i caeRem4.Crem_Contig0  I 61 C 0
s caePb3.Scfld02_0       3649411 165 +  4147112 AGGTACCACTATCAGAAATAACGATAACACTAAGGAAATG-CGTACTTTctatgattcaaaaagtgcacctgagaaatctcagaaaaattcTCA--TCTGATATTCTGACCAAGAAAATTGCGAAATGCATACGACGTCATCTAGCAAGATCTAAATCAAAAGTCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I
e cb4.chrX              10719911 340 + 21540570 I

a score=-4723.000000
s ce10.chrX              5363159 123 + 17718866 ATTTTCAA----GTAAGACAGTAGGAACATAAAAT-------------------------AAACGGGATGTCC-----AAAAAATATAGAAGCCCTCA-----AAA------TAATTGCACCTATCTTGCTTTCACATCGTTTTACTTTAGGAA--CGACTCGCCTTTTT
s cb4.chrX              10720251 121 + 21540570 attt--------tgaaaacag-aaaataataaaac------------------------aaaacagacaatttttgaaaaaaaaaactgaaatcttcgccagcaaaaatttgtaattgcACCAGTTTATAT-----ATGTTTTCACTTCGCGAa--caa---------tt
i cb4.chrX              I 340 C 0
s caeRem4.Crem_Contig0   2136371  96 -  4500979 ----------------AACGG-------ATAGAAC---------------------------ACAGGAAgagtcaaataaaaaatattg-----ctcg-----aaaaaataataattgcaCCTATCCATCT-----ATACaccttttttggaaaaccac---------TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3649576 141 +  4147112 ATATCCCACagctgaaaacga-------aaaaaacgaattctaGTCTTTAGACCACTACAAAACAGGAAAGTC----AAATAAATATCGGTTCCAGCAAAACCGAAAATACATAATTGCACCTATCCTTCT-----ATACAACCATTCAG--AA--CGA---------CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   507151 1160 +   823664 I

a score=45320.000000
s ce10.chrX              5363282 196 + 17718866 TTTTTTGAACAATTGCACCTGCTGTGGGTTGTTTCCTTTGGCTTTTCC-TTTTTTGCC----ACTAGTACGAA-TAATT---------TTTAGTGCAAAAAGCTTTACAACAGCTAGTAGAAAAAATATTTTTGAAATTTTACCTACCTCCTTTGTAAATTGAAGTCGCTCATAGGGTTGTTGTCCC---GTTTGGACTCTGCCGTCCCTGAAA
s cb4.chrX              10720372 174 + 21540570 tctttt---gaattgcACCTGCTCTTG------TGTTGTGGCTTCTCAGTTTTTAGTCAAAGACTAGTACGAA-TCCGTTA-------TTCTTTTCAAATAGCTTGAACACCG-----------------------AATAAACTGACCTTTTTCCCAAATTGAAGTCGCTCATTGGATTGTTGTCCCGTTGTTTGGACTCGGCGGTTCCTGAAA
i cb4.chrX              C 0 I 612
s caeRem4.Crem_Contig0   2136467 168 -  4500979 TCTTTGAAAGAATTGCACCTGCTT--------------TAGCTTCTCAGTTTTTAGTC----ACTAGTACGAA-TCCATTCTTccct-ttcttttgaaaatatttgaacac--------------------------ACAAACTGACCTTTTTCCCAAATTGAAGTCGCTCATCGGGTTGTTGTCCCGCCGTTTGGACTCGGCGgttcctgaaa
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3649717 153 +  4147112 CCATC----AAATTGCACCT----------------------TGCTCAGTTTTGTCCC----ACTAGTACGAATTCCATTATTCTATAttcttttcaaagaatttgaac----------------------------ATTAACTGACCTTCTTCCAAGATTGAAGTCGCTCATTGGATTGTTGTCCC---GTTTGGACTCAGCGGTCCCTGGAA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   508311 148 +   823664 tctcttccaaattttcacCTGCTG------------TCCCGATATTGCCTTTTTTGTCAAGTACTAGTACGAA-TATGCA--------TTCTTTTCAAA------------------------------------------ACTGACCTTCTTTTCAAATTGAACTCGCTCATCGGGTTGTTGTCCC---TTTTCGAATCCGCTGATCCTAAAA
i caeJap4.Scaffold18194 I 1160 C 0

a score=-23413.000000
s ce10.chrX              5363478 100 + 17718866 AAGATTAAA---TTTA----------AAAAAAATACAAGAGC-----------------------------------------------------------AGGTTTT------TGTTTTGTG----------------ATGCTCTTTTT------------TTTAATTTATAAAA--GAAAATTGTAGA-------------------CATTCATTCTTTAACTCT
s caeRem4.Crem_Contig0   2136638 148 -  4500979 atagtTGAG---CTTA----------AAGGGATTCCGAAA----------------------------CTGGGGATAGTTTCTTTAT-------AATCCTGATGTTCC---ATACATGCAATACTCACAGATGTCTTATAGTATTTTCATAGTGG------GCAGAATATAAGGAATTGAAAGTCCAGGA----------------------GCAtttttttATATT
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3649878 188 +  4147112 ATGAGTGAGGCCCTGATCTAATGACTATGGGATTCCAACAGTTCTCAAATTTATGGACGCTCACCTATCTATCAAGAATGACCTGAT-------AAT----ATGTTTC------CAGGCAATG----------------AGACTCTTCATAAGAG------gtatattttcgaaaaatgaaatttcgaaaagtaacGCTTCAAAACCTTCacgtattttttcttttc
i caePb3.Scfld02_0      I 8 I 68
s caeJap4.Scaffold18194   508459 103 +   823664 ----------------------------------------------------------------------------AGTAACGTAACGTGTAGAAAT----GTGttttttgatgctttttgcg----------------atatttttttttgttgttttccaaattaattagaaaa--aaaagtcaacGA------------------------ATTTTGAATCT--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10720546 612 + 21540570 I

a score=-429.000000
s ce10.chrX              5363578 11 + 17718866 ---AAGAATATAAT
s caeRem4.Crem_Contig0   2136786 10 -  4500979 ---gagca-aaaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   508562 13 +   823664 AACTGGAA-ACAAT
i caeJap4.Scaffold18194 C 0 I 98
e caePb3.Scfld02_0       3650066 68 +  4147112 I
e cb4.chrX              10720546 612 + 21540570 I

a score=-348.000000
s ce10.chrX              5363589 31 + 17718866 ACCATTAAGT-----AATACACATATGTAGTTCACA
s caeRem4.Crem_Contig0   2136796 36 -  4500979 agcaaaaagtttTGCAATGTTTACCTGcacttttgc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3650066 68 +  4147112 I
e caeJap4.Scaffold18194   508575 98 +   823664 I
e cb4.chrX              10720546 612 + 21540570 I

a score=-4065.000000
s ce10.chrX              5363620 34 + 17718866 TCTGTTTCATT----------------------------------ACGTT----------------------CAATAAACACATCACAAT
s caeRem4.Crem_Contig0   2136832 89 -  4500979 tttttttcactctCTTGAACTATACTTCCTGGAGCAaaatctcaaacttttttgcttttcaaaGACTCGTTGCGaagaatat-tcttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3650134 34 +  4147112 -----TCCGGTC----------------------------CCCCAACTTC----------------------CAAAAAGttc-tctcatt
i caePb3.Scfld02_0      I 68 C 0
e caeJap4.Scaffold18194   508575 98 +   823664 I
e cb4.chrX              10720546 612 + 21540570 I

a score=1139.000000
s ce10.chrX              5363654 28 + 17718866 -TATCTTTTTTTTTTAT------AAAAAGGAAGCC--------
s cb4.chrX              10721158 33 + 21540570 -tgtttttcttttttatga----aaTCAGGAAGAT-----ATA
i cb4.chrX              I 612 C 0
s caeRem4.Crem_Contig0   2136921 39 -  4500979 -tgtcttctccTTTGATCAT---TATTAAGAAGCCCACCAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3650168 36 +  4147112 tccttttcttttctcatcatcGAAAACACGAAGCC-------A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   508575 98 +   823664 I

a score=73307.000000
s ce10.chrX              5363682 814 + 17718866  
s cb4.chrX              10721191 871 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2136960 829 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3650204 837 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   508673 735 +   823664  
i caeJap4.Scaffold18194 I 98 I 8534

a score=-1816.000000
s ce10.chrX              5364496 20 + 17718866 ATTGAG---CAACAAGTATAGCC--
s cb4.chrX              10722062 25 + 21540570 attgagttttgaggAGCAAGAGCAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2137789 21 -  4500979 attgaa----aatacacACGAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3651041 21 +  4147112 actgaa---caaaaaatgtgagcC-
i caePb3.Scfld02_0      C 0 I 108
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-2953.000000
s ce10.chrX              5364516 66 + 17718866 GAGCAACC-AAAGGAAAGATATTGTAA-AGTGAAAAAGA------TTT----ACGATAAGGATTGATTAAAA-ATTGTA--------------
s cb4.chrX              10722087 67 + 21540570 GAGCAGCG---------------GCAACGGTGGAAAGGA------TCTCA--ATGGTTACATC---TTGGAACACAGCGCGCTGAAAATTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2137810 75 -  4500979 GAGCAGCACAGGTTTACACTGGTgcgatattgaaaaaaaaagtctttTCAGTATGATAAAGTT---TCAGAA-ACGGCA--------------
i caeRem4.Crem_Contig0  C 0 I 12
e caePb3.Scfld02_0       3651062 108 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-235.000000
s ce10.chrX              5364582 25 + 17718866 CTTGCCTGATGATTGCAAGCGCTTG
s cb4.chrX              10722154 23 + 21540570 CTTTAATAATGTTGTGAAAAGCT--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3651062 108 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e caeRem4.Crem_Contig0   2137885 12 -  4500979 I

a score=-2080.000000
s ce10.chrX              5364607 29 + 17718866 --------TTGTTGAATCAAGAACATCAAGAAGCCGA
s cb4.chrX              10722177 26 + 21540570 GGGGCTGTTTGTAAAAGcg--------cattttc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2137897 21 -  4500979 --------TTATTCAATCA-----ATTCAGTaac---
i caeRem4.Crem_Contig0  I 12 C 0
e caePb3.Scfld02_0       3651062 108 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-4179.000000
s ce10.chrX              5364636 58 + 17718866 AAGGAAAAAATTCATTAGCCTTTTTGGGAAATGAGCGGTGATGATGCCGTGAAGGAAG-------
s cb4.chrX              10722203 25 + 21540570 -ggaaaa-------ttaaaCT-------------------------CActgaaggaag-------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2137918 45 -  4500979 -gaaaaaaa---ctttaaattgtCTGTGTGTG---------TGCAGTCCTGTGGGAAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3651170 65 +  4147112 GGGAAAAGAGTCCATTAGCATGGCCAGATGAGCAGCATTGATGACGTGATGTTGAAATCGAGAAC
i caePb3.Scfld02_0      I 108 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-2307.000000
s ce10.chrX              5364694 24 + 17718866 TTGT-----------GTGCACTATGTTGAAGTAAT------
s caeRem4.Crem_Contig0   2137963 24 -  4500979 ---------------ATGTGCT-CATTAGAGTGGCTTGAT-
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3651235 40 +  4147112 TTGGGAACGTGTAGAATGATCT-TAAGGAAGTTACCTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e cb4.chrX              10722228 14 + 21540570 I

a score=-2737.000000
s ce10.chrX              5364718 29 + 17718866 -AACATATCCGGGTCACCTGAAAGTG---TATA---
s cb4.chrX              10722242 32 + 21540570 AATCTATCCCGGTTCCCAAAATGAAA---GAAAgc-
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   2137990 36 -  4500979 AATCTAACGCGGATGATgtgatgaaaaaggaaaaca
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3651275 29 +  4147112 -AACCGAGACGGACCACTTGCAGATA---TATA---
i caePb3.Scfld02_0      C 0 I 149
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-18.000000
s ce10.chrX              5364747 30 + 17718866 AAAAATGTTGGACTAGAAAGAAATGTACAT
s cb4.chrX              10722274 11 + 21540570 agaaatgttga-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2138026 26 -  4500979 aaaaatggtggA----ACCGAATAGTACAT
i caeRem4.Crem_Contig0  C 0 I 158
e caePb3.Scfld02_0       3651304 149 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=652.000000
s ce10.chrX              5364777 102 + 17718866 CAAACATTAAAAAATTCAATATCCAGGTCACAATATACTATAGTTCATTTTTCATCTTTCTAGCCAAAAAAAAACTTAATCTTTAGAACTGAGGCT----TAATTT
s cb4.chrX              10722285 101 + 21540570 -aaatacTTTACTGCTGATTTTCAATGTAACGGTTTACAGAAAATGATCTT----CtttaaatcagaaaatagTTGTTAACTTTTGAATTGAATCTAAAATAATTT
i cb4.chrX              C 0 I 45
e caePb3.Scfld02_0       3651304 149 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e caeRem4.Crem_Contig0   2138052 158 -  4500979 I

a score=0.000000
s ce10.chrX              5364879 24 + 17718866 TTAAGCTGCGTTTTAAGAAATATG
e caePb3.Scfld02_0       3651304 149 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e cb4.chrX              10722386 45 + 21540570 I
e caeRem4.Crem_Contig0   2138052 158 -  4500979 I

a score=103.000000
s ce10.chrX              5364903 11 + 17718866 CTTTCAGGCTA
s caePb3.Scfld02_0       3651453 11 +  4147112 ctcaaaaatta
i caePb3.Scfld02_0      I 149 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e cb4.chrX              10722386 45 + 21540570 I
e caeRem4.Crem_Contig0   2138052 158 -  4500979 I

a score=-1733.000000
s ce10.chrX              5364914 27 + 17718866 -------CTGTTTTCAAGCTGCCTTTTTAGGCTC
s cb4.chrX              10722431 20 + 21540570 ATGTTATCAGTCTTGATATC--------------
i cb4.chrX              I 45 I 9
s caePb3.Scfld02_0       3651464  9 +  4147112 -------ccgttttta------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e caeRem4.Crem_Contig0   2138052 158 -  4500979 I

a score=-380.000000
s ce10.chrX              5364941 25 + 17718866 AGTGATGAT-----AAATATTTTCAGGTTT
s cb4.chrX              10722460 30 + 21540570 GATAAACATAAGCCAACtcgtttcagattt
i cb4.chrX              I 9 I 97
s caeRem4.Crem_Contig0   2138210 25 -  4500979 AATATCTATGAgc--ac---tttcagaatt
i caeRem4.Crem_Contig0  I 158 C 0
s caePb3.Scfld02_0       3651473 16 +  4147112 --------------aaatagtttttgattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-4570.000000
s ce10.chrX              5364966 54 + 17718866 AGATCTTCAGGCTTAGTTTTTAGG----CTTGATTTA--TATTCTGAGGTTATCAGGTTT
s caeRem4.Crem_Contig0   2138235 52 -  4500979 ---tttt-----ttaatttttgaaacaacatggTATAATCATTAATATTTGAGCAAGTcc
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3651489  9 +  4147112 ----------------------------ggTGGGTTA-----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e cb4.chrX              10722490 97 + 21540570 I

a score=-5025.000000
s ce10.chrX              5365020 68 + 17718866 --------AGGTTTTC-AAATACGTTTTTCGAAACATTCAACATTTATAAACATTGACTC--CACGTGAAAAGTTTCAT
s cb4.chrX              10722587 65 + 21540570 --------aaattttg-gagaaagttt----aaacatttgaaatctaaaaacatattttat-caTATATTCAACATCAT
i cb4.chrX              I 97 C 0
s caeRem4.Crem_Contig0   2138288 62 -  4500979 --------gagttttg-----aatttc----acatTGTTCAAGTTGCTCAATCTTTTTCATACACTGAATTGATATCAT
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3651498 72 +  4147112 AGACACATTCGTTCTGTGAAACAGTGT----TGATActccattttttaaaaacactaCC---CACTTGCAAATTCTAAT
i caePb3.Scfld02_0      C 0 I 42
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-4242.000000
s ce10.chrX              5365088 82 + 17718866 GAAGTATCAAAAATGAAAAAGAAAAAACCTTCGTAAAACTATGAACATAAAGAAAAAAATTTGAAAAGTGATTGAAAAAAAA
s cb4.chrX              10722652 56 + 21540570 CAAGAAtacgaaattaaa----------------aatattattc-tgaaaatcaaaaaattca---------ttaaacaACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2138350 26 -  4500979 -----------------------------------ACATTGTTCTTGTAAGTCAGTCAGTT---------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3651570 42 +  4147112 I
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-38590.000000
s ce10.chrX              5365170 321 + 17718866 TTACACTGCTCAAAACACACATTTCAAACATTTT--------------------------------GTTCTGTACCTGTACATCATTTTT----------------TGAA----AGCGATGTAACCACTGTGTTTTGTAAAGTTCT---TGTTCATTATAATTCACACGTGTTTAA----AATAA-TTTTTTAGTTATCAGAATGACATTACAAGTGGTGATGATAACTGATTAGT--------AGTAGACATACCGGTTATTTTGCACGC--GGTTTT------------------------ACTCGTTC----AATCTTTTGA---------AGGTTATACAAATCTAAC--------------------ACCTTTCAA-------------AGAAAATGACA--------TACATACTTATTT-------TTATGGGTGTTTATAAATTTATACTGTTTTCATGTATTT------TAGG-------------
s cb4.chrX              10722708 443 + 21540570 TTTCACTTTCTAGAGCAGCTATCCCCCgcttattcaatttttgggtggataaaaaattcttagattctgctGGAAAT-CATTCCAATTTAAACCATTCTGCAGAGCTGAA-------TTTAAAACCTACGGGTTTCTCA--ACTTTCAGTAatcattctaaaa-aaataaattttgagatGATGGTTTTTGTTGATGATAATGTAATTGTTTGGATGA-------GACTGATAAAA--------CGAGAGCGTATCATTCCATTTATAACTCTCCTTGACATGTGAGATATCAGCATTAAGGAATTATTTCTCAAGGTTTTTCATGTTGTCAGAAGGTGATAAAATTCTATTTTATCTCAAGGTTCTGCAGTAACATTCAATCGGTTCGTTTTCGACTAATAACTCTAATAACTCAATTTTGCATTAATAAACTCAAAACCCCTTATCACATCGAA-------CATGTGATT------TACG-------------
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   2138376 242 -  4500979 TTTTAATATCACAATCAG-TATCTTCCTTTTATT-------------------------------------------------TGatttg----------------tgaa-------aatgaaaaatgtgggTGT--------------TGTTTGTTTCGAGG-AGATGTGTTATG----------TTTTACGCATTTTTAGTTCAAGGTTTTTCTAA-------GATTCAC-----------------GCAAACCATTCTTTTTATCAAT--------------------------------ATTACTTC----AGTTTCTTAT---------AACTGTCACagttctgtt------------------------ttcaa-------------aaataataatt--------ttaagttTGCTTT---------------CCTTATCAATTTGAA-------CATGTGATC------TATG-------------
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0       3651612 352 +  4147112 ttacAATATCACCATCCA-TATTTCGCTTCCATT--------------------------------GTTCAGTCAAT-CAAGTTTACTTT----------------TGAACAtaaacgatgaaaaatgacagtttGCTGTTAGTGTCATTAGTTGTTT-------GATTAGTTTTG----ATTGGCCTGTGTTGACACTAAAATGATTCCACAGATGAT----ATGATTAATTGGATCATCTTCTCAAGGTTTTTCACACATTCGACTAAT--GGTCAACAG---------------------tttagttc----agtttttttt---------cgcagaaTCATTTGTTCT------------TTAACATTcatattcaattgtttttctaaaacaaaatatgC--------TGAGTACTgtatt---------------tcttatcattttgaa-------CATGTGATCTTACATTATGCTGACCCAATTGA
i caePb3.Scfld02_0      I 42 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=-1811.000000
s ce10.chrX              5365491 28 + 17718866 AAATAAATAATT-TTAACGAGCTTTTTTC-----------------
s caeRem4.Crem_Contig0   2138626 42 -  4500979 AATTGAACAGTATTT----CGcatttcacatttctcaatttctacC
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0       3651964 28 +  4147112 ------ACATTA-TT----AGTTTTTCCTACTTCTCAAT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I
e cb4.chrX              10723151 35 + 21540570 I

a score=12784.000000
s ce10.chrX              5365519 114 + 17718866 --------------------AAAATTGTATGTCTTATGTCCATGAATGGTAATTATAATTGTAGTCTAGTAG--TTATTTTTGTTGAAATTT----AAATACTTTGC----TTTCAGTACTTTTCCATCATCAT--ACGTCTCTCA
s cb4.chrX              10723186 131 + 21540570 aatttttcgttttttatatCAAA---GCATGGTTTGTG-CTGAAAGTCAT-GAATTGATTGTAGTCTAGTCC--TTTTTTACCC----ATTT----CACTCCCCCACCGTTTTGCAGTACATATTTAGCAGCACAGACGTCTTTCA
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2138668 113 -  4500979 --------------AACAT-AAA---CCACGGTTTGTG-CCGTAAGTCATGGAAGCTAATGTAGTGTAGTGA--tttttttCGT----CTTT----CACTGCTTCTC--GTTTGCAGTACATATTTAACATCAT--ACGTCTTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3651992 115 +  4147112 -------------------CAAA---CCATGGTTTGTG-CCAAGAGTCAAAGGGAAAACTGTAGTCTAgtgcgttttttttctt----aattttaaCACGACTCCCC--GTTTGCAGTACATATTTAACATCAT--ACGTCTTTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   509408 8534 +   823664 I

a score=81809.000000
s ce10.chrX              5365633 247 + 17718866 A-TTGGCTTCTACTTGCTCTCTTATCATTAACCATTTTTATGATAACCAGACGCATAGTTTCATTTTCTCAGACCATATTTATTTTTCAATTT---ATTTGTTT------CTTTTTGTATTC-----------------------------TGTTGA------------ATTTTGAGCTACAATTGTGTGGTATTT-----TTAGATG---TTAGACCTATACCCTGTTCAAAATTTAACAGTTGATCAGTTGGAATACGAGAAGAATACACGATTTCTTCAACCGGCATGGGATTGGATCAAAGT
s cb4.chrX              10723317 252 + 21540570 T-TTGGCTTCTACCTGACTTCTTATCACTAACCATTCGATTGATAATGAGACACATAGTTTCATATTCTCAGACCATATTTGTTGTTGGTATTGACGTTTATAC------CGGACT--------------------------GAGCTTTCGTCTT--------------ATTTTGATTCttgattt--tagttttt--tttccagatg---ttaGACCTATATCCTGTTCATAATTTCACTGTTGAACAGTTGGAGTATGAAAAGAACACAAGAGTTCTTCAGCCAGTTTGGGACTGGATTAAGGT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2138781 283 -  4500979 T-TTGGCTTCTATCTGCCTTCTTATCATTAACCATTCAAATGATAATCAGACACatagtttcattttctcagaCCATATTTATTGTTGGT-TTGACGTCTTTTC------GTGGCTCCATTC-TAACCGTTAGC-------ACCGTTTACgtcttg----atttttcagaatttacttcctaattttataatttttcattttcagatg---ttagACCTATAtccagttcaaaatttcaccgTTGAACAGATTGAGTACGAGAAAAACACCAGATTTCTTCAACCAGCATGGGATTGGATCAAGGT
i caeRem4.Crem_Contig0  C 0 I 38
s caePb3.Scfld02_0       3652107 303 +  4147112 TCTCAGCTTCTACTTGCCTTCTTATCATTAACCATTCAAATGATAACCAGACAcatagtttcattttctcagaCCATATTTATTGTTGGTTTTGACGTCCGTCTCAAATGGTGGTTTTATTTGTAACAGCTGCTTTTCTTaagaattgaagttttgaataattcttaagaattgaagttttgaatattgaagttttgaattccagatG---TTAGACCTATATCCTGTTCACAATTATACAGTTGAACAGTTGGAATATGAGAAGAACACCAGATTTCTGCAACCAGCATGGGACTGGATCAAGGT
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   517942 241 +   823664 -ATTGACTCCTATATGG-TTCTTATCATTAACCATAT-AACAATAACTAATCGTTATGTGCTCCTTTCTGAGTCCGGgctaa--accaaaaaaaatgttttttt------t----------------------------------------tcttca------------aatttcatCATTTGTTGatgcattttt--gtttcagatgtTATTAGACCTATACCCTGTTCAAAACTTCACCGTTGAACAGATAGAgtatgagaaaaacactcgACTTCTACAACCTATTTGGGATTTTATGACAGT
i caeJap4.Scaffold18194 I 8534 C 0

a score=-5384.000000
s ce10.chrX              5365880 38 + 17718866 TAGTTTCACCTAACCTTTTTTT-----GTAAATCATGATTCGA
s cb4.chrX              10723573 41 + 21540570 TGAACTATTCTGATCGGGTTTCAAAGAGTGatgcat--ttttg
i cb4.chrX              I 4 I 1
s caePb3.Scfld02_0       3652418 33 +  4147112 TTAATTTTTCGGAC--AATttc--------attcataattttc
i caePb3.Scfld02_0      I 8 I 1
s caeJap4.Scaffold18194   518183 29 +   823664 -------ACgttattgtttttgaaaagacaaTTCAA-------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2139064 38 -  4500979 I

a score=238491.000000
s ce10.chrX              5365918 427 + 17718866 ------------TTCCAGAATGGAAATGAACACATTTTAAGCTCGCCGCTTTTCCCGCCGTTCTATGCGCTCTCAATCGATTACACTTGGGTAGCCGTTTTCACATGTAAGCA---------CGTACCA------CGGGTTGATAACATTGAATTAAACTAC--AAAATGTTTCAGTTATTGACGTGTTTCTGTGCAACGTTCCATTTTTCAAAGATGCAAAAATCCAAAAAGATCGAAAAGTGACCTGGGATTTGATAAAGAAGTCACTGAAGCTTCAAGGATGGAATCAGCTCCTGTGGATTTACCCGATGGCACTTGTCCAGTTAATTTGGGTACCTGATACAGAGCTTCCTATCCTGGCACCAACAGTTTTTGAAATGCTTTCACAGCTGGCTATATTTTTCCTGGCCTTTGATTTCACATATTTCTGGTTCCATTATATCAATCACAAGGT
s cb4.chrX              10723615 424 + 21540570 ------------gtttagaaCGGAAATGAGCACATTCTGAGCTCACCACTCTTCCCACCATTCTACGCACTTTCTATCGATTATACATGGGTTGCTGTATTCACATGTGAGAG------CACCGTACCA--GTCTCTGCTTGTTAACA------AAATAC------TTCGTTACAGTTATCGACTTGTTTCTCTACGATgtaccatttttcaaaaatgccaaaattcaGAAGGATCGCGTTGTCACATGGGATCTGATGAAGAAATCCTTGAAACTTCAAGGATGGAATCAACTTCTCTGGATTTATCCAATGGCTCTTGTTCAGTTGATTTGGGTTCCAGATACAGAACTGCCGATTCTTGCAccaacagtttttgaaatggtCTCGCAATTGGCAATATTCTTCCTTGCATTTGATTTCACCTACTTTTGGTTCCACTATTTCAATCATAAGGT
i cb4.chrX              I 1 I 1225
s caeRem4.Crem_Contig0   2139102 427 -  4500979 ------------ttccagaatgGAAATGAGCACATCTTGAGTTCACCACTCTTCCCACCATTTTACGCTCTCTCCATCGACTACACCTGGGTTGCCATATTCACATGTGAGCA---------CGTACCACGGGCACGGTTAGATAACA------TAATTTCC--GGTTTCTTTCAGTTATTGACCTTTGCCTCTATGATGTtccattcttcaaaaactcaaaaatacaaaaggATCGTAAAGTGACATGGGAGTTGATGAAGCAGTCACTGAAACTTCAAGGATGGAATCAGCTTCTCTGGATTTATCCAATGGCTCTCGTTCAATTGATTTGGGTTCCAGACACCGAGTTGCCGATTCTTGCAccaactgtatttgaggtggtGTCACAAATTGCTATCTTTTTTCTGGCCTTCGATTTCACCTACTTTTGGTTCCATTATATCAATCACAAGGT
i caeRem4.Crem_Contig0  I 38 C 0
s caePb3.Scfld02_0       3652452 419 +  4147112 ------------tttcagaatggtAATGAACACATTCTAAGCTCACCATTGTTCCCACCATTCTATGCTCTTTCCATTGACTATACCTGGGTTGCCGTATTCACTTGTAAGTT--------TTGTAACA------CATATTGATAACA------TAAGCTC-----TTCTTTTCAGTCATTGATCTGTGTCTCTATGATgttccattcttcaaaaatgccaaaattcaaaaagatcgCAAAGTTACTTGGGATTTGATGAAGAAATCTTTAAAACTCCAAGGATGGAATCAACTTCTGTGGATCTACCCAATGGCTCTGGTTCAGTTGATTTGGGTTCCAGACACAGAGCTTCCGATTCTTGCAccaacagtttttgagatgctTTCACAACTTGCAATTTTCTTCCTTGCCTTTGATTTCACCTACTTCTGGTTCCATTATTTCAATCATAaggt
i caePb3.Scfld02_0      I 1 I 3
s caeJap4.Scaffold18194   518212 450 +   823664 TAAAAACTATTGTTTCAGAAAGGAAACGAACACATATTGAGCTCGCCACTTTTTCCACCATTCTACGCGCTCTCAATCGATTACACCTGGGTTGCAGTTTTCACCAGTAAGCAGAAGGAAAACGTGTCAATGTCACGGTTTGATAACA------TTAATTTCGTGTTTTGTTTCAGTCATTGACTTATGGTTTTCGGAAGttccgtttttcaaaaatgccaaaattcaAAAGGATCGCAAAGTTACATGGGAATTGATGAAACAGTCATTAAAGCTCCAGGCATGCAATCAACTTTTGTATATTTACCCGATGGCCCTGGTTCAATTGATTTGGGTGCCACCTACAGAGCTTCCAATTTTGGCTCCAACAGTGTTTGAAATGCTTTCACAAGTggccattttctttttatcGTTTGATTTCACCTACTTTTGGTTTCACTATTTTAGTCATAAGGT
i caeJap4.Scaffold18194 C 0 C 0

a score=-70268.000000
s ce10.chrX              5366345 617 + 17718866  
s caeRem4.Crem_Contig0   2139529 317 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3652874 315 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   518662 399 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10724039 1225 + 21540570 I

a score=73330.000000
s ce10.chrX              5366962 293 + 17718866  
s cb4.chrX              10725264 342 + 21540570  
i cb4.chrX              I 1225 C 0
s caeRem4.Crem_Contig0   2139848 309 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3653189 516 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   519061 307 +   823664  
i caeJap4.Scaffold18194 C 0 I 38

a score=-4773.000000
s ce10.chrX              5367255 35 + 17718866 ATTA---------AAATTTGACC----------------TTT----AAAGTTGA--CAAA--------------------GTTGAA
s cb4.chrX              10725606 82 + 21540570 gagcaaaaagagaaaatgtaACCGAATAGTTTGGTTCTTTTC----AAAGTTCATTGAGAGAGATCTTTggagaaaaatgtttggt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2140157 66 -  4500979 GAGC---------GACTGAAACCGAAtacatcagttttttttttcaaaagttcattcagaacatttttt-----------ctttct
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3653705 55 +  4147112 GAGC---------ACTTGAAACCGAATAGCTTAACCTATTCA----AAACCACGTTCAAA-------CT-----------TTTGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   519368 38 +   823664 I

a score=145685.000000
s ce10.chrX              5367290 488 + 17718866  
s cb4.chrX              10725688 486 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2140223 473 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3653760 478 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   519406 366 +   823664  
i caeJap4.Scaffold18194 I 38 I 28

a score=-5291.000000
s ce10.chrX              5367778 50 + 17718866 ATCTGAAATATCCCCCACCAAAAGGGTTAACCTGTCCAAATTGTGGTAAA
s cb4.chrX              10726174 16 + 21540570 --------------tctaaaagaa----aa----------------aaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2140696 20 -  4500979 --------------tgttcaaaaactttaa----------------aagg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3654238 27 +  4147112 --------------TTTCCAATTAGTGTAAT---------GCGTGGGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   519772 28 +   823664 I

a score=153536.000000
s ce10.chrX              5367828 887 + 17718866  
s cb4.chrX              10726190 789 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2140716 752 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 128
s caePb3.Scfld02_0       3654265 777 +  4147112  
i caePb3.Scfld02_0      C 0 I 55
s caeJap4.Scaffold18194   519800 753 +   823664  
i caeJap4.Scaffold18194 I 28 C 0

a score=110.000000
s ce10.chrX              5368715 7 + 17718866 GCAAAAT
s cb4.chrX              10726979 7 + 21540570 TCAAACT
i cb4.chrX              C 0 I 413
s caePb3.Scfld02_0       3655097 7 +  4147112 AAAAACT
i caePb3.Scfld02_0      I 55 C 0
s caeJap4.Scaffold18194   520553 2 +   823664 -----GT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2141468 128 -  4500979 I

a score=-10313.000000
s ce10.chrX              5368722 157 + 17718866 ATTCGTAGATTAT--------GTATATTCCGTT-------TAGAATCTTTGATG-----------------AAAATT----TAATGAACTGCAAA--ACAGGTCAACCAAGTTGCTGATTGC--CAGAAAGTAGCCT---------TAGGTTCGGAAAT------CATCGGTTGTC-----------GGCTGCCG---AAAGTTTTATCGTTCGCCAACTTCGGCA
s caePb3.Scfld02_0       3655104 218 +  4147112 AATTGCCAATTATAAACTGGGATATGTTCGgtcataaaaataaaataaatgacgtgagagaaaaaatagaaaaaatgagaataatgagc-gaaaa--aCGAGACTCCTAGGTTTTCGACTACGGAGAAAAATAACATATAGGAAGCTAGATTCCAAAACTTAAAGCAACTGTGGTCACATGGACTAGGGCTTC-----AAAATTATATGATAAAATAAAGTCTAAA
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   520555 126 +   823664 --------------------TGGCTAATCGGCTTGAAAGATAGAAGCAGAGCTA-----------ATAAGAAATAGG----CAATTAGA-GAAAATGACGCGTTCGTTCCCTTATCTA------GGGAAAATA-------------AACGCTCTGAAAA----------------------------GATTACTGTATGGGTTTTTATG-----------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10726986 413 + 21540570 I
e caeRem4.Crem_Contig0   2141468 128 -  4500979 I

a score=-1742.000000
s ce10.chrX              5368879 37 + 17718866 ACTTTCGATATTAATTTCA-----------ATTGTTTTGTAAATA--CGC
s caeRem4.Crem_Contig0   2141596 37 -  4500979 actgtagtttttgatatca-----------aatgtATGGGATTCa--cgt
i caeRem4.Crem_Contig0  I 128 C 0
s caePb3.Scfld02_0       3655330 50 +  4147112 ACGGTTGATTTAGACCTCagaatacttttcaaaatattattgtCATTCTC
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18194   520681 35 +   823664 -TTTTCTGaattaatttca-----------att-tttggtaaGTG--CGC
i caeJap4.Scaffold18194 C 0 I 172
e cb4.chrX              10726986 413 + 21540570 I

a score=-2153.000000
s ce10.chrX              5368916 49 + 17718866 ---ATTCAAAGACCCTAAATATTGCGAATATCGTCACTGTAAATAAA---ACAAT
s caeRem4.Crem_Contig0   2141633 42 -  4500979 gaattttcaaagaacgGACTTC-----GCCCTTTTTATGATAACAAC--------
i caeRem4.Crem_Contig0  C 0 I 268
s caePb3.Scfld02_0       3655380 50 +  4147112 GGAATTCCAACAATTGGAGTACTGTATATATTTTCATTGTTAGTAAACTT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   520716 172 +   823664 I
e cb4.chrX              10726986 413 + 21540570 I

a score=-665.000000
s ce10.chrX              5368965 195 + 17718866 TATATTTTTTCCTCGAAAA----ACACTCTGAAATATGAGTTTAACAGAAATATATGTTTGAACAACGCCAAGGCCTCGGCAGCCGACGGTTGCCGGTTGCTGAAAATTTCAGCGATTGGCAAATTCGGTAACCGCTCATTGACTGATACCCAGAT--GATGCT-------GATGCAATTAATTTTCAACCTGTAACCTAAATTTTAG
s caePb3.Scfld02_0       3655430 164 +  4147112 TGTacttttgataagaaaacatgaaacccgcaaatttgag-------------------tgaaaaactGTAATTC----------------------TTACTGAAAACGATAACAGATCGTGATTTGTGTTACT-TGCATTGCTTaacatcaaaattcaatgttcCAAAGGGGTTGAAGTGTCAATCAACTCGTACCCAAAGTTT--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   520716 172 +   823664 I
e cb4.chrX              10726986 413 + 21540570 I
e caeRem4.Crem_Contig0   2141675 268 -  4500979 I

a score=164.000000
s ce10.chrX              5369160 36 + 17718866 TGAAACAAGGTAGCCAACGAACTTATACCTCTTGAT
s caePb3.Scfld02_0       3655594 25 +  4147112 AGAAACG-----------GAACTTATATTTGTTTAT
i caePb3.Scfld02_0      C 0 I 60
s caeJap4.Scaffold18194   520888 34 +   823664 tgaaaTTGTGAAGCTCGAGAAGTAAAATTTcttt--
i caeJap4.Scaffold18194 I 172 C 0
e cb4.chrX              10726986 413 + 21540570 I
e caeRem4.Crem_Contig0   2141675 268 -  4500979 I

a score=-694.000000
s ce10.chrX              5369196 57 + 17718866 AAGAAAAGTACTTGGCTTCTCGGGCAATAGGTACCACAAAAACTACTAAAAATAACC
s caeJap4.Scaffold18194   520922 39 +   823664 caaaa----------cttttccagTAGTGTGTAT--------TTGTTTATGGTTAGC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3655619 60 +  4147112 I
e cb4.chrX              10726986 413 + 21540570 I
e caeRem4.Crem_Contig0   2141675 268 -  4500979 I

a score=-1446.000000
s ce10.chrX              5369253 26 + 17718866 AAAGTGTCAATC---AGCGCCAAACACAC
s cb4.chrX              10727399 17 + 21540570 AGAATGTAAA------------AATacac
i cb4.chrX              I 413 I 1
s caeJap4.Scaffold18194   520961 25 +   823664 AAAGTGGTCGTCACTAGCTTCAGAT----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3655619 60 +  4147112 I
e caeRem4.Crem_Contig0   2141675 268 -  4500979 I

a score=0.000000
s ce10.chrX              5369279 1 + 17718866 A
e caePb3.Scfld02_0       3655619 60 +  4147112 I
e caeJap4.Scaffold18194   520986 0 +   823664 C
e cb4.chrX              10727416 1 + 21540570 I
e caeRem4.Crem_Contig0   2141675 268 -  4500979 I

a score=16405.000000
s ce10.chrX              5369280 221 + 17718866 ATCTCATTTCCTCCGTGTTGAGTCTGTAATAATTGA-----------TTTTAGATCTGGAGACGAGGGTGAGAAAATGGAAATTCTTGAAGTTGGGATTGACTGAGGTTCGGCT------ACGGCCGAGAGATCGCCGATCAACTTCGGTAGATCAAAAACATAAAGGTTTGT-------------------------------CTTGAAATATTGG--------------------------------------TGTCTAGCCTTCAAATGGCATCATTATTCTTAAAATT-------------------------------------------CCATCTAATTATTCT
s cb4.chrX              10727417 221 + 21540570 ---------------------------------------atttcatttttcagatttggaaaCAAGAGTGCGGAAATGGAAGTTCCTGAAATTAGGACTAACAGAGGTCCGCCT------CCGACCTCGGGACAGAAGATCTACTTCTGTCGACCAAAAGCATAAAGGTTAGT-----------------------TGcggttttccgaaaaaaaat--------------------------------------tgtctgggttactgt----acttttgatagaaaaaa----------------aatgca---tttcaTTTATTGGCTCCAGTTTTCCAACATTCAC
i cb4.chrX              I 1 I 91
s caeRem4.Crem_Contig0   2141943 213 -  4500979 GTGTCTTGGCCTTTGCACACACTCTGTAATACATACGtcgtctcaattttcagatttggaaaCGAGAGTCCGCAAATGGAAATTCTTGAAGTTGGGGTTGACTGAGGTCCGTTT------ACGGCCACGGGACCGAAGGTCAACATCGGTGGATCAGAAGCACAAAGG-------------------------------------------------------------------------------------------tatatttttaa----actattGCTAATAAAAAT--------------GAGAGCA----------------------TTTTTCAATGTCTAT
i caeRem4.Crem_Contig0  I 268 I 1
s caePb3.Scfld02_0       3655679 312 +  4147112 ----------------------------ATATTAactctttcttatttttcagacttggaAACAAGAGTccgaaaatggaaattcttGAGGCTGGGATTGACTGAGGTCCGTTT------ACGACCTCGGGATCGAAGGTCAACGTCTGTGGACCAGAAACACAAAGGTTTGTGAAGCTACCGTAACAAAAGCacctgttattttttgaataataatttgCTTTAACTAACAATTTACACAAATCTTGAAATGAGTGTCTATTTCTTAAA----ACAATGCACTGGAAagatgcccttctattagggaaaacaaaatttgttatGTTTTCACAATTCTTCTAAGCTTTAA
i caePb3.Scfld02_0      I 60 I 51
s caeJap4.Scaffold18194   520986 151 +   823664 -------------AGCTTACATCTTGTAATATGAGCAC-------TTTTCCAGAACTGGAGACAAGGGTCCGAAAATGGCGTTTCCAAAAGTTAGGTCTCGCTGAGCTCCGTCTTAGGAATCGAGATCGAGATCGGCGGTCCACTTCAGTGGATCAAAAACACAAAGGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-10165.000000
s ce10.chrX              5369501 52 + 17718866 TTGTGA-----------TGAGAT---------CATCGGCTCAATTC----CAAAAAACACGTATGTGTTGTCATTC
s caeRem4.Crem_Contig0   2142157 27 -  4500979 TTATGAAGTAGA-----CAGGAT--------------TCTTATATT------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3656042 70 +  4147112 --ttgaaaaagaaaaggcgGGATACCGTACCAAATAAGctcaaattattctgaaaaacaatccCATTTCATC----
i caePb3.Scfld02_0      I 51 C 0
s caeJap4.Scaffold18194   521137 23 +   823664 --------------CAAAGAAAG---------CATATTTTTAATTC------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10727638 91 + 21540570 I

a score=111487.000000
s ce10.chrX              5369553 293 + 17718866 TTAATTCCCTCAAATTTTGTTTTACAGAATGCTCTTCCACATCTTCAAGTCCTCAACACCAACGGCCGAATAACATTGGGTATTTAACAAGCCCCATGGAAAGAAAATGTGTGCCT------------GGAGAACG--ACCTTTAGTTATTACATACATACA--------------------------ATTTCAGTTACTCCGCTTTCCATGAAACCATCGCCATCCAGAAGAGATACTGAGAAAGATGCGTTGGAATACGAGTTTCTAGAAGGGTACAAGAAATCGGGAACATTAGAAATTGATGG-T--AAGACATACATCAAAGCTTTA-----ATTT
s cb4.chrX              10727729 315 + 21540570 CTGATCTTTgctaattttcgttttcagaatgCTCCTCAACCTCATCCAGTCCACAACACCAGAGACCGAATAATATCGGGTACTTAACCAGCCCGATGGAACGAAAATGTGAGTCT----------------cgtt--atttttgtttattttttggaatta------tcgAATATGAAATTGTTCTATTTTCAGTTACCCCGCTCTCCATGAAACCGTCACCGTCTAGGAGGGACACGGAGAAAGATGCGCTGGAGTTTGAGTTTCTGGAAGGATGTAAAAAATCTGGAGTGCTGGATATAGATGGTT--GGTTTTCGTATCattattttcgaattattc
i cb4.chrX              I 91 C 0
s caeRem4.Crem_Contig0   2142184 294 -  4500979 ATAATTACCAGCaatattc-ttttcagaatgCTCGTCTACCTCCTCAAGTCCACAACACCAACGGCCAAATAATATCGGCTACTTAACAAGTCCTATGGAAAGGAAATGTGAGtcc----------------aattcaaattttgttga-------aaacta-------------------cGGTATATTTCCAGTCACACCACTAACCATGAAACCATCTCCGTCTAGAAGGGATACTGAAAAGGATGCTCTTGAGTTTGAATTTCTAGAAGGGTGCAAGAAGTCGGGAACGTTAGATATTGATGG-T--ATTTAACATACAACCATTTTTCAACGACC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3656112 286 +  4147112 -TAATTCCCTgcaatttt--gtttcagaatgctCCTCTACATCATCCAGCCCACAGCACCAGAGGCCAAATAATATAGGGTACTTGACGAGTccaatggaaagaaaatgtaagttt------------------tt--tgtattgtcTCTTGTCATAAACCA-------------------TGT----TTTTCAGTTACACCACTCTCTATGAAACCGTCGCCTTCGAGGAGGGATACTGAGAAGGATGCGTTGGAATTTGAGTATATGGAGGGTTATAAGAAATCTGGTACTTTGGATATTGATGG-T--AGGATACTTTCAAGCACTTTT------CTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   521160 330 +   823664 CCAACTGCCCACAATTTT--GATTTAGAATGCTCCACAACGTCATCCAGTCCCCAACACCAACGACCGAATAATATAGGGTACTTGACAAGTCCAATGGAAAGAAAATGTGAGTGAATAAGGACGGACAAAGAACC--ATTCTTGAAAACCTTTCAAAATTAGCCCAGTTTAATGTGAAATATGCTAATTTTCAGTCACTCCACTCTCCATGAAACCATCGCCGTCGAGAAGAGATACAGAGAAGGATGCACTggagtttgagtttttagAAGGATGTAAAAAGTCTGGAACCTTGAATATTGATGG-TAGAgttgttttttaaaccttttt------ttt
i caeJap4.Scaffold18194 C 0 I 110

a score=59345.000000
s ce10.chrX              5369846 305 + 17718866 TTAA-----AATCTTTTTCC--TATCAGGAGAAAAGCAAGTTGTCGACCCAAACGAGATTCACATCATCAGCCTGCTCGGAAGCGGCTCTTGTGGTGTAGTCGAATCTGCGACGGTTCGCTCAAAATTGATGGCTGTGAAGGTGAGCATTAC-CCCTCACACGGAGGC-----AGTGATGTATGGTTGAGATACACATCCGGACCACTTTGAATAGAATA-----------AATCTTGCATGGCTCCAGTATGAACTCTTGAAAAAA------------------------GATTGACAGAATCGTTGCATACGCAATTCAAAAGAGAAGGG-----------------------------GTCCTTCACGGGTTA------TCATGC
s cb4.chrX              10728044 330 + 21540570 tCTGAATTGCATATTTTTAA--TTCCAGGATTGAAGCAAGCCGTGGATCCCAACGAAATTCACATAATTGGTTTGCTAGGAAGTGGCTCATGTGGAGTAGTCGAATCGGCGATGGTGAAGTCTAAATTGATGGCTGTGAAGGTGAGCATTACTGTCAAACGGGGGACCCTT--GTTGATTAATGGTCACGATTCATCAC---------TCAAATAGAATA---TGCTCTGCAATTTTGTGTAGCTCT--TGAGAAT-AAGGAAATGA------------------------GATTGACAGAATCGTTGCATacgaaatttgacaaaaaatggagaggGACAT---------------TGTTGTTTTCAATGGGTTTAGGGGTTTTTCA
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2142478 301 -  4500979 ---------CATGTTTTTAA--TGTCAGGTGTCAAGCAGGCAGTAGATCCAAATGAAATCCATATCATCGGCCTGCTCGGAAGTGGTTCTTGTGGCGTGGTTGAGTCGGCAATGGTACGATCGAAATTGATGGCTGTGAAGGTGAGCATTAC---CACGTCGGAAAGC------TTGATAGATGGTTGCTATAAATCTCAT-TGAGCTTCGTATCGAAAACCCTGACGTGCAATTTCG--------------GCATGGAGGAAATGA------------------------GATTGACAGAATCGTTGCAtacagaattcaaaaaagagtgG--------GC---------------CCTTGTTTTCAATGGGTTAA-----TCTTGA
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3656398 316 +  4147112 TTTa-----cgtttttccaattttctaggAGTAAAGCAGACCGTGGATCCAAACGAAATCCAAATTCTAGGATTGTTAGGAAGTGGCTCTTGTGGAGTAGTCGAATCCGCAATGGTTCGCAAGAAATTGATGGCTGTGAAGGTAAGAATTAC---CACACAGTGAGCG-----ATTGATGAATGGTTGCCATAAATCTTTTGGGAGCCTAGAATTGAATATCCTGACGAGGA-------------------------GAGAAAAGGACcctttcatttccttttctgcCAGGATTGACAGAATCGTTGCATACCAAATTC---AAATATAGG--------AT---------------CCTTGTTTTTAAAGAGC--------CCTTGA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   521600 301 +   823664 -tta-----aattatt------tttcaggaGTGAAGCAGTGTGTGGACCACAACGAAATCCAAATCCTCGGAGTGCTTGGCAGTGGCTCATGCGGCGTCGTGGAATCGGCCATGGTGCGCCAGAAATTGATGGCTGTGAAGGTAATGATTAC---TCCGTGACGGCACCTCAACCTGATTTATGG------------ACCAGTGCACTGCAAAACGTGCA-----------GATGGCGAAAAgcta------gatttaaaaaaaaga---------------------------aggaaaaatcgTTGCATACAAAATTTTTCGGACCGCCG--------GCTCCGGCTCGTGGGTGTCTTAGTTTTAGTGAGTTA------TTCT--
i caeJap4.Scaffold18194 I 110 C 0

a score=44537.000000
s ce10.chrX              5370151 82 + 17718866 GGGGGCGAAAAATTGTA-----------GTGGTGCTA-AAGACCATTAGAAATTCCATTGTTTTCGTTTTTCTTGATTCAATTGTCAATGCAAA
s cb4.chrX              10728375 74 + 21540570 TGG---GAGCAA----------------GTGGTAGTG-AAGAGCATTAGTAATTCCATTGTTGTTTTCTGTGTTGATCCAATCGGCCACTCTAA
i cb4.chrX              I 1 I 69
s caeRem4.Crem_Contig0   2142780 89 -  4500979 TGGAACGACCAATTGTAGTGGGGCTCTCGTGGTAGTA-GGGAGCATTAGAAAttccattgtttttt----tgttgattcaatTGACAATGCAAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626        15 87 -  1189296 GGAAACGAGCAATTCTAGTGGTACTC--GTGGTAGTGGAGAACCATTAGAAattctattgttttt-----tgttcattcaaTTGACAATgcaaa
i caeSp111.Scaffold626  N 0 C 0
s caePb3.Scfld02_0       3656717 84 +  4147112 GAAAAGGAGCAATTGTAGTAGGG-----GTACTAGTGAGAGAGCATTAgaaattccattgttttt-----tgttgattcaaTTGACAATGCAAA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   521901 72 +   823664 -----CGAGTGTTGGTG-----------GCAATGGTT-GGGAGCATTAGAGATTCTATTGTTTTT-----CGTTGATTCAATTGAAAATGCAAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-33371.000000
s ce10.chrX              5370233  80 + 17718866 ----GCAAATGCGTTAGAGA---GGAGGAGAGACCTC------TAA-----------------------------------------------------------------AATTG---------------------------GTGGAAAA------------------------------------------CAAATTTC---------------------------------------------AGTAAAAATT----------CTGAACCTCTTTCAAT-------
s caeRem4.Crem_Contig0   2142869 149 -  4500979 ----GAGAAAGGAtttgagagatagaaaaagGACCTC------CAACCGAA------------------------------------------------------------ATTCG---------------------------GGGGAAAAGGCACATTGGG------------------ATTTTTCT-----CTAGTTTC--AttcaacatgaaaaatgagaaaggaaaCCCAGAAGAAAAGGGTAAGAACAAAT----------TTGAACTTTCGCATA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       102 143 -  1189296 ----gagaaagaattcg------agaaaagtgatttcagtgtaaatgaaaaacatctTGTTACCAGCTGCTTTTCG-----------------------------------GTTTA-----------GTTTCAAGAGCTGGGtggtaaaaa-----attgaa-------------------------------caaggAAC------------------------------------CAAAAGAGTAGGAGCAAAT----------TTGAACTTGTGCGTG--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3656801 240 +  4147112 ----GAGAAAGGATTCG------AGAAGAAGGACCtc------cattcgaaaaattttaatgtgaacggaacaatgaaaaaca-----acaaatttcccaaaaataatCACATTGAAATAaccaaatattttgagaactaGGCGTGAAAGAGTATTATTGGAGttgtacagtaacccatgttttttctcattccaaaAAACGTGCTAAACGTGCAAGTT----------ACTAACCTCAAAAGggtaaaaacaaat----------ttgaacttGTGCACA--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   521973 173 +   823664 GCGAAAGAAAGGATTTG------GAGAAGGTCGGTTG------AATTTGAA-----------------GAGCGCACAAAAACATGCTCACAAATCTGAAGAGAGtaatgaaatttt---------------------------gtgggaaacgAATGCACGA-------------------------------TAGGGAAT----------------------------ATGTGTGTGGAATGTGTaaaaaaaCATTCAAGTAGAGTTGAACTTTTGTGTC-TTGAAAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10728449  69 + 21540570 I

a score=143076.000000
s ce10.chrX              5370313 207 + 17718866 GTGAGAACAGTAGTTTGATAAATGCGACTCTAGAGAATACGTTGA--------------CACAGAATCATA-------------ACGGT--TCCCTCAGCTTTGTCTTCTTCAGACTATGTACAAAAATGACAATAAGGAAAATTTGAAACGAATTCTTCGTGACGTCCGAATTATGTCAATGTGCAATTCTCCGTTCATTGTCACCAGTTACGGATATTTCATGTTTGATGTAAG
s cb4.chrX              10728518 229 + 21540570 GTGAGAACAT-AAATTGATATACGACACCCCAGAGAATCACTTGACACGCATGCAAACTCATAGAGTCAGATATTTGTacaacttcatt--ttttt----ttcctcaactTCAGACAATGTACAAAAACGACAAtaaggaaaatttgaaacgaaTACTTCGGGATGTCAGGATAATGTCGCTCTGCAATTCTCCATTTATTGTAACGAGTTATGGTTATTTCATGTTCGATGTATG
i cb4.chrX              I 69 I 5
s caeRem4.Crem_Contig0   2143018 221 -  4500979 gtgagaactg-aaaatgatacaTAGCACCCATGAGAGTTACTTTACTTGA---------CACAGAATCATATATCTGTGCG---TCATT--GCTCTcaacttcatcttcttcagACTATGTACAAGAATGACAAtaaagaaaacttgaaaaggaTTCTCCGTGACGTCAGGATCATGTCTCTCTGCAATTCTCCGTTTATAGTAACCAGCTACGGATATTTCATGTTCAATGTAAG
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626       245 208 -  1189296 TTGAGAACAG-AATATGATACACGACGCCCATGAGATTTGTCTAA--------------CATGATATCATATA-----------CACTT--TTGCTTAACTCTACTTCCTTCAGACAATGTACAAGAATGACAACaaggaaaacttgaaaaggATTCTCCGTGATGTTAGAATAATGTCACTGTGCAATTCTCCATTCATTGTAACAAGTTATGGATATTTTATGTTCGATGTAAC
i caeSp111.Scaffold626  C 0 I 15
s caePb3.Scfld02_0       3657041 211 +  4147112 GTGAGAACAGAAATTTGATACACGACACCCTTGAGAATCGTCTGA--------------CATGGAACCATATA-----------TACTTCCCCTCtcaacttcatcttcttcagaCTATGTACAAGAATGACAATAAGGAGAACTTGAAAAGGATTCTTCGAGATGTCAGGATAATGTCACTGTGTGATTCACCATTCATTGTTAGAAGTTATGGGTATTTCATGTTCAATGTAAG
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18194   522146 195 +   823664 TTGAGAACATATAACTGATAAATTGGACCCATGAGAGT--GTTGA--------------CCTGC--------------------CAACT--TCTTC---CTTATACATCTTCAGACCATGTACAAGAATGACAACAAAGAAAACTTGAAGCGAATTCTTCGTGACGTCAGGATCATGTCTTTGTGCAACTCGCCGTTCATTGTCACAAGTTACGGCTACTTTATGTTTGATGTGAG
i caeJap4.Scaffold18194 C 0 C 0

a score=205.000000
s ce10.chrX              5370520 1 + 17718866 T
s cb4.chrX              10728752 1 + 21540570 C
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2143250 1 -  4500979 C
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold626       468 1 -  1189296 c
i caeSp111.Scaffold626  I 15 C 0
s caeJap4.Scaffold18194   522341 1 +   823664 T
i caeJap4.Scaffold18194 C 0 I 703
e caePb3.Scfld02_0       3657252 39 +  4147112 I

a score=-752.000000
s ce10.chrX              5370521 11 + 17718866 GTGACATTCTT
s cb4.chrX              10728753 11 + 21540570 TTGGCTCTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2143251  9 -  4500979 TTGGATATA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       469 11 -  1189296 tttgatttttt
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3657252 39 +  4147112 I
e caeJap4.Scaffold18194   522342 703 +   823664 I

a score=-7269.000000
s ce10.chrX              5370532 22 + 17718866 ATTAACATATCCAATTCCTCCA------
s cb4.chrX              10728764 16 + 21540570 ACCCGTAATAATCAGT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2143260 11 -  4500979 -----CAGATACTATT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       480  4 -  1189296 attc------------------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   523045 22 +   823664 ACTAACACCAACCAAT------TGTTTA
i caeJap4.Scaffold18194 I 703 C 0
e caePb3.Scfld02_0       3657252 39 +  4147112 I

a score=308537.000000
s ce10.chrX              5370554 529 + 17718866  
s cb4.chrX              10728780 535 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2143271 426 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       484 402 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3657291 411 +  4147112  
i caePb3.Scfld02_0      I 39 C 0
s caeJap4.Scaffold18194   523067 427 +   823664  
i caeJap4.Scaffold18194 C 0 I 41

a score=-4365.000000
s ce10.chrX              5371083 53 + 17718866 TTTGAACTTTTTTTTTTGA-----------------------------AACATAATCTTGACCCGAAATGTGGGTCACGTCC-
s cb4.chrX              10729315 83 + 21540570 cataaaacgatttttttgaaaaactgaattttatCCATAAAGAGCCATAAAGTGGTGCGGGCCGGGCCGTGCGGGTCTCTTCC
i cb4.chrX              C 0 I 100
s caeRem4.Crem_Contig0   2143697 28 -  4500979 ------------------------------------------------AAAATTGTGAGGACTG------GTGGATGTTTCC-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3657702  0 +  4147112 C
e caeJap4.Scaffold18194   523494 41 +   823664 I
e caeSp111.Scaffold626       886  0 -  1189296 C

a score=-5106.000000
s ce10.chrX              5371136 32 + 17718866 CGATCGCAACAGTGAGCCGCGGGGCACTCCTG--
s caeRem4.Crem_Contig0   2143725 12 -  4500979 ----------------------CAAAGTCACAAg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       886  9 -  1189296 -----------------------GGAATCaca--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3657702 10 +  4147112 ----------------------gggaaaattc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   523494 41 +   823664 I
e cb4.chrX              10729398 100 + 21540570 I

a score=-15681.000000
s ce10.chrX              5371168 38 + 17718866 TTAATAGGTCTAAA---------------AGTAA-------------------------------------------ATAATGAAGTTTGAAAAAA
s cb4.chrX              10729498 92 + 21540570 TTAtttgatccaaaaatataaatactGAAAGAAACAATGGCAGGGCTCGGTTGACAAgtatggaaaattttcaatttttagcaatatt----attt
i cb4.chrX              I 100 C 0
s caeRem4.Crem_Contig0   2143737 15 -  4500979 -----------------------------------------------------------------------------tttacattttt----attt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       895 14 -  1189296 -----------------------------aagaa-------------------------------------------atgataaa----------t
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3657712 20 +  4147112 -----------------------------agaaa-------------------------------------------atcatataatc----tttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   523494 41 +   823664 I

a score=262942.000000
s ce10.chrX              5371206 708 + 17718866  
s cb4.chrX              10729590 723 + 21540570  
i cb4.chrX              C 0 I 176
s caeRem4.Crem_Contig0   2143752 713 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626       909 710 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3657732 739 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   523535 703 +   823664  
i caeJap4.Scaffold18194 I 41 C 0

a score=4152.000000
s ce10.chrX              5371914 5 + 17718866 ACTTT
s caeRem4.Crem_Contig0   2144465 5 -  4500979 GCTTT
i caeRem4.Crem_Contig0  C 0 I 260
s caeSp111.Scaffold626      1619 5 -  1189296 ACTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3658471 5 +  4147112 acttt
i caePb3.Scfld02_0      C 0 I 198
s caeJap4.Scaffold18194   524238 5 +   823664 ACTTT
i caeJap4.Scaffold18194 C 0 I 139
e cb4.chrX              10730313 176 + 21540570 I

a score=182.000000
s ce10.chrX              5371919 2 + 17718866 TT
s caeSp111.Scaffold626      1624 2 -  1189296 TT
i caeSp111.Scaffold626  C 0 I 151
e caePb3.Scfld02_0       3658476 198 +  4147112 I
e caeJap4.Scaffold18194   524243 139 +   823664 I
e cb4.chrX              10730313 176 + 21540570 I
e caeRem4.Crem_Contig0   2144470 260 -  4500979 I

a score=0.000000
s ce10.chrX              5371921 3066 + 17718866  
e caePb3.Scfld02_0       3658476  198 +  4147112 I
e caeJap4.Scaffold18194   524243  139 +   823664 I
e cb4.chrX              10730313  176 + 21540570 I
e caeSp111.Scaffold626      1626  151 -  1189296 I
e caeRem4.Crem_Contig0   2144470  260 -  4500979 I

a score=1016.000000
s ce10.chrX              5374987 26 + 17718866 TTTGTTTTCTCCTTGTGTCGGTTGCC
s caeSp111.Scaffold626      1777 26 -  1189296 tttgtttttctcttgtatTAATGAAC
i caeSp111.Scaffold626  I 151 C 0
e caePb3.Scfld02_0       3658476 198 +  4147112 I
e caeJap4.Scaffold18194   524243 139 +   823664 I
e cb4.chrX              10730313 176 + 21540570 I
e caeRem4.Crem_Contig0   2144470 260 -  4500979 I

a score=189.000000
s ce10.chrX              5375013 4 + 17718866 ----TTAC
s cb4.chrX              10730489 4 + 21540570 ----TTAC
i cb4.chrX              I 176 C 0
s caeSp111.Scaffold626      1803 8 -  1189296 ATTCATAT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3658476 198 +  4147112 I
e caeJap4.Scaffold18194   524243 139 +   823664 I
e caeRem4.Crem_Contig0   2144470 260 -  4500979 I

a score=-5006.000000
s ce10.chrX              5375017 39 + 17718866 AAAATGTTT----------TTTCAGGAAAAATG---CCGACGTTCGGACGTC
s cb4.chrX              10730493 34 + 21540570 AGACTGTTA-----------TTC----AAAATG---CCAGTTGTTGTCCCCA
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold626      1811 48 -  1189296 ATATCACcaatttcagagatttc----aaaatggcACCACCGGTTCTACAAA
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   524382 35 +   823664 aaaatgtttgttggATAAATTCCAGATGGAACG---AC--------------
i caeJap4.Scaffold18194 I 139 C 0
e caePb3.Scfld02_0       3658476 198 +  4147112 I
e caeRem4.Crem_Contig0   2144470 260 -  4500979 I

a score=1263.000000
s ce10.chrX              5375056 8 + 17718866 GAGTTCCG
s cb4.chrX              10730530 8 + 21540570 GAATTGCA
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold626      1859 8 -  1189296 GAGTAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3658674 8 +  4147112 GAGTTGCA
i caePb3.Scfld02_0      I 198 C 0
s caeJap4.Scaffold18194   524417 8 +   823664 GAAAGAGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2144470 260 -  4500979 I

a score=204817.000000
s ce10.chrX              5375064 757 + 17718866  
s cb4.chrX              10730538 660 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2144730 649 -  4500979  
i caeRem4.Crem_Contig0  I 260 I 2
s caeSp111.Scaffold626      1867 629 -  1189296  
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3658682 656 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   524425 669 +   823664  
i caeJap4.Scaffold18194 C 0 I 360

a score=129872.000000
s ce10.chrX              5375821 165 + 17718866 TTTCAGCAAATCATTCATCGGGATATTAAACCAGGGAATATTTTGATTGACTATGATGGGAGAGTCA-------------------------------AAATTTGTGACTTTGGCATAAGTGGAATTCTTCAAGACTCCATTGCCGTTTCAGCTACGGGATGTCAGCAATATACTGCTCCAGAAATCAATGAAGTA
s cb4.chrX              10731200 165 + 21540570 TTACAGAACATCATTCACCGAGACATAAAGCCATCAAACATCTTAATTGACAACGACGGAAGAGTGA-------------------------------AAATCTGTGACTTTGGAATCAGTGGAGTTCTCCAGGATTCTCTTGCAGTTTCAGCAATTGGCTGCCAGCAATATACTGCTCCCGAAATCAACGCGGTT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2145381 165 -  4500979 TTCCAGCAAATCATTCACAGAGACATCAAGCCATCCAATATATTGATTGATAATGATGGAAGAGTGA-------------------------------AGATTTGTGATTTTGGAATCAGTGGAATCCTTCAAAATTCTCTCGCTATCTCCGCAACAGGCGTTCAACAATACACAGCGCCGGAAATCAATGAAGTA
i caeRem4.Crem_Contig0  I 2 I 33
s caeSp111.Scaffold626      2502 165 -  1189296 TTACAGCAGATAATTCATCGAGATATCAAACCATCCAATATCTTGATTGATCATGATGGTCGAGTTA-------------------------------AAATCTGTGATTTCGGTATTAGCGGAGTTCTACAAAATTCGGTCGCAATGTCGGAAACTGGTTGTCAGCAATACACTGCCCCAGAAATCAACGAGGTT
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3659344 196 +  4147112 TTTCAGCAAATTATCCATCGAGATATAAAACCATCCAATATTTTGATTGATTACGACGGGAGAgtgaaaatttgtgatttcGGTATCaNNNNNNNNNNaaaTTTGTGATTTCGGTATCAGTGGGATTCTTCAGAATTCCATCGCGGTTTCACAAACGGGATGCCAACAGTATACAGCCCCAGAAATTAATGAGCTG
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194   525454 165 +   823664 tttcagcaaaTGATTCACCGAGATGTAAAACCATCAAACATCCTGATAGACAATGACGGGAGGGTGA-------------------------------AAATCTGTGACTTCGGAATTAGTGGAATTCTGCAAAATTCTGTGGCTATTTCTATTGTTGGCTGCCAGCAGTACACGGCTCCGGAAATTGCTAAGGTA
i caeJap4.Scaffold18194 I 360 I 12

a score=-10903.000000
s ce10.chrX              5375986 37 + 17718866 TAACTAAAACAAACAAAAAATTTAACGTGAAACCAAG
s cb4.chrX              10731365 29 + 21540570 ----TGATAGAATTAATTATTTTACATT----CTAAG
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold626      2667 16 -  1189296 -----------------TGTTTCAACTT----CTAAT
i caeSp111.Scaffold626  C 0 I 18
s caePb3.Scfld02_0       3659540  1 +  4147112 -----------------T-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525631 26 +   823664 CAGCTACAATACtccaaaaatacatt-----------
i caeJap4.Scaffold18194 I 12 C 0
e caeRem4.Crem_Contig0   2145546 33 -  4500979 I

a score=68836.000000
s ce10.chrX              5376023 98 + 17718866 ATTTCAGCTAGCAATGGTTCACTCACCAGGATATTCGATCAAAAGTGATATATGGTCACTGGGAATCACCATTTTTGAGCTTGCTACATTGACGTAAG
s cb4.chrX              10731400 98 + 21540570 TTTTCAGCAAGCCTTTATTTTTTCCCCTGGTTACTCAATCAAAAGTGATATTTGGTCCCTTGGTATCACTATATTTGAGCTGGCCACGCTAACGTAAG
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2145579 98 -  4500979 GTTTTAGCAATCGCTGGTTCACTCGCCAGGCTACTCTATCAAAAGTGATATTTGGTCACTTGGTATCACTATCTTCGAGTTGGCCACACTAACGTaag
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold626      2701 98 -  1189296 atttcagttAGCTTTGGTGCATTCACCAGGATATTCAATCAAAAGTGATATTTGGTCTCTGGGAATCACTATTTATGAACTTGCAACATTAACGTGAG
i caeSp111.Scaffold626  I 18 C 0
s caePb3.Scfld02_0       3659541 87 +  4147112 -----------CACTGGTTCAGTCGCCTGGATATTCAATCAAAAGTGATATATGGTCTTTGGGAATCACCATTTATGAACTTGCAACACTAACGTTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525657 94 +   823664 -tttcaggtTGCAT---TCCGATCCTCTGGTTATTCGGTAAAAAGTGACATCTGGTCACTAGGAATAACTGTTTATGAGCTGTCAACATTACAGTAAG
i caeJap4.Scaffold18194 C 0 I 6

a score=-8777.000000
s ce10.chrX              5376121 31 + 17718866 CATTTAAAAAGTTTTTGTATTCTGTTTGTCG
s cb4.chrX              10731498 11 + 21540570 TACC----ACGCTTT----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145677 11 -  4500979 ttct----ttgtttt----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2799  4 -  1189296 TGTC---------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659628  3 +  4147112 TTG----------------------------
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18194   525751  6 +   823664 I

a score=-6003.000000
s ce10.chrX              5376152 40 + 17718866 AAGGAAATTAATTTTTGTGTGTTTTTCCAGTCATTCGAAT
s cb4.chrX              10731509 19 + 21540570 --AGAATCTACTCATTACATG-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145688  4 -  4500979 -----------------tatg-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2803  1 -  1189296 -------------------T--------------------
i caeSp111.Scaffold626  C 0 I 24
e caePb3.Scfld02_0       3659631  5 +  4147112 I
e caeJap4.Scaffold18194   525751  6 +   823664 I

a score=0.000000
s ce10.chrX              5376192 5 + 17718866 TATAA
e caePb3.Scfld02_0       3659631 5 +  4147112 I
e caeJap4.Scaffold18194   525751 6 +   823664 I
e cb4.chrX              10731528 0 + 21540570 C
e caeSp111.Scaffold626      2804 24 -  1189296 I
e caeRem4.Crem_Contig0   2145692 0 -  4500979 C

a score=-19886.000000
s ce10.chrX              5376197 143 + 17718866 ATTGTTTTTAGGCACCCAGGTAGCTGTGACTTGAGCATGCTGGGCATTTCAGATTTTTGCTGAAAATTAGCTTTTTTCGAAACTCTACGTCTCTAGAAAATAGTTTGAGAAAGTTTTAAATTTGGTTTTTTTGGGCCTATTTT
s cb4.chrX              10731528 104 + 21540570 ATTGTTATC--GTAAGCAAACAG-------TTGAACA--ACAAACACATTAAATAGTTGCGG---------TTTATATTAAAC---------CGGGAAAGAGGTCATATTGTGTCctgaaaacaaacaatttg----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145692  59 -  4500979 atTGCT----------------------------------CACTCttatcaaata----------------------------------------caaaaatgtggTATTGTGTCGAGTCAATGGACTATTCA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3659636  26 +  4147112 ----------------------------------------------------------------------------------------------caaaaaaagcaa----gtgt-------agagactttt------------
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18194   525751   6 +   823664 I
e caeSp111.Scaffold626      2804  24 -  1189296 I

a score=-321.000000
s ce10.chrX              5376340 15 + 17718866 TTTGTCTAATTTAGC
s cb4.chrX              10731632 15 + 21540570 ttattaaaaaaaaga
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2145751 15 -  4500979 TGTGAATAAAACAGT
i caeRem4.Crem_Contig0  C 0 I 8
e caePb3.Scfld02_0       3659662  0 +  4147112 C
e caeJap4.Scaffold18194   525751  6 +   823664 I
e caeSp111.Scaffold626      2804 24 -  1189296 I

a score=0.000000
s ce10.chrX              5376355 8 + 17718866 AATGACCC
e caePb3.Scfld02_0       3659662 0 +  4147112 C
e caeJap4.Scaffold18194   525751 6 +   823664 I
e cb4.chrX              10731647 8 + 21540570 I
e caeSp111.Scaffold626      2804 24 -  1189296 I
e caeRem4.Crem_Contig0   2145766 8 -  4500979 I

a score=0.000000
s ce10.chrX              5376363 15 + 17718866 TTGTTATGCACCACC
e caePb3.Scfld02_0       3659662  0 +  4147112 C
e caeJap4.Scaffold18194   525751  6 +   823664 I
e cb4.chrX              10731647  8 + 21540570 I
e caeSp111.Scaffold626      2804 24 -  1189296 I
e caeRem4.Crem_Contig0   2145766  8 -  4500979 I

a score=2727.000000
s ce10.chrX              5376378 30 + 17718866 TTTAATA-----------------AAATTTCAGATACCCATATCCAG
s cb4.chrX              10731655 21 + 21540570 --------------------------GGTTCAGACTGCCTTACCCAA
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2145774 22 -  4500979 -------------------------TGTTTCAGGTTCCCGTACCCTT
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626      2828 25 -  1189296 -----TT-----------------GTATTACAGGTTCCCATATCCAG
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       3659662 20 +  4147112 ---------------------------tttcagatttccttATCCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525757 47 +   823664 TTTGTTAAAACAAGCCGAGAATACATATTTTAGAGTACCATATCCAG
i caeJap4.Scaffold18194 I 6 I 33

a score=3594.000000
s ce10.chrX              5376408 29 + 17718866 TTGGAATC-TCCGAGTTTACTCTCTCCTCT
s cb4.chrX              10731676 29 + 21540570 CAGACCTC-CAAGAGTTTGCTTTGACTGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145796 25 -  4500979 CTGATATCTCAGGAATATGTT-----TGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2853 29 -  1189296 CTGGCTTA-ACTGAATTTGCTCTCTCTGCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659682 29 +  4147112 CTGGCCTC-TCGGAGTTTATGCTGTCTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525804 33 +   823664 I

a score=-5134.000000
s ce10.chrX              5376437 12 + 17718866 ACGATTATGAC----G----
s cb4.chrX              10731705 12 + 21540570 TGTATCAATTC----T----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145821 16 -  4500979 TGGAGCAATCTATAAT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2882 12 -  1189296 TATATCAATTC----A----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659711 12 +  4147112 CACATCAATTC----T----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525837 12 +   823664 ----ACGATTG----TGATC
i caeJap4.Scaffold18194 I 33 I 39

a score=-1065.000000
s ce10.chrX              5376449 41 + 17718866 TCACCAGCACCTTCTCTCGAAAGGGTA--------A----CTTTTTTT------GAACC
s cb4.chrX              10731717 47 + 21540570 TCAGCAGCGCCTCGTctaaaaacagta--------aaaacgtttgtgt----aaaactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145837 45 -  4500979 TCAGCACCACCGCGTCTGCGAAGAGTA--------A------TTCAGTGatgaagaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2894 39 -  1189296 ACTCCAGCTCCAAGCCTCCAAAAGGTa--------agatcag------------aaaat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659723 53 +  4147112 TCCCCACCACCCCGGCTGAAGAAAGTATGCAAGCGAAATCATTttccc------aaact
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525849 39 +   823664 I

a score=35474.000000
s ce10.chrX              5376490 118 + 17718866 AAAAA------------CATTGAAAT-----CAC---------------------TTTTTAATAGGGAATTTACTCCGATAGTCTTGTTGAGTTTGTTGAGCGACTACTTCAAAAGAATAAAGATGATCGGCCAAGTATTGTTGCTGTGCAGGTAA
s cb4.chrX              10731764 113 + 21540570 caaca----------------aaaaa---ttaac----------------------cTTTAAGGGCGAACACAGC--GACATCCTTGTGGATTTTGTTGCAAAATTACTCCAGTTTGACATAGACAACCGACCAAATCTAACTGGAGTTCAGGTAA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2145882 116 -  4500979 caata----------------aataactCTTCTC----------------------TTTACAGGGAGCATTTAGT--GACAACTTGGTGGACTTTGTCGAGAAGCTACTTCAGAAAAGCAAAGACGATCGACCGAATCTCAACGGAGTTATGgtaa
i caeRem4.Crem_Contig0  C 0 I 55
s caeSp111.Scaffold626      2933 127 -  1189296 gaaaagtggcAGTTTAGGAATAAAAA-----CAT----------------------GTCACAGGGAGCATTTAGT--AAAAACTTGGTCGATTTCGTTGGAATTGtgcttcagaaaaacaaagacgATAGACCAAATCTAAACGGCGTGCAGGTGA
i caeSp111.Scaffold626  C 0 I 40
s caePb3.Scfld02_0       3659776 112 +  4147112 caaaa----------------aaaac-----cat---------------------aattgCAGGGTGAATTCACT--GACGATTTGgttcaatttgttgaaaaactactccaaaaaaacaaagacgATAGACCAAATCTCAACGGTGTTCAGGTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525888 136 +   823664 -aaaa------------aaatataaa-----tatgtATGCTtacattattaatttttttaaaggcaaAATTCAGT--GCAAATCTCGTGGAATTTGTGAGAAGTCTACTGCAAATCGATGCAAACAAAAGACCACACTTTGACGATGTTAAGGTAA
i caeJap4.Scaffold18194 I 39 C 0

a score=-1160.000000
s ce10.chrX              5376608 11 + 17718866 -----GCCAGATATTA
s cb4.chrX              10731880 11 + 21540570 -----GAAAAAACATG
i cb4.chrX              I 3 I 23
s caePb3.Scfld02_0       3659888 11 +  4147112 -----GTAAAAACCTA
i caePb3.Scfld02_0      C 0 I 39
s caeJap4.Scaffold18194   526024 14 +   823664 AAATAGAGAAATCA--
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626      3060 40 -  1189296 I
e caeRem4.Crem_Contig0   2145998 55 -  4500979 I

a score=-3320.000000
s ce10.chrX              5376619 28 + 17718866 --------------------GGCACAATGT------TGACAAAACAACGACATT
s cb4.chrX              10731914 29 + 21540570 --------------------AGTCTAATGCG-----TGTCGTAATTGGAGGAAA
i cb4.chrX              I 23 C 0
s caeJap4.Scaffold18194   526038 52 +   823664 GATCAGCAAAACACTCTTGAGACATAACGTGCCCTTTCTACTAATTAGCACA--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3659899 39 +  4147112 I
e caeSp111.Scaffold626      3060 40 -  1189296 I
e caeRem4.Crem_Contig0   2145998 55 -  4500979 I

a score=55066.000000
s ce10.chrX              5376647 66 + 17718866 TTTACAGGAGCTCAAATTTTTCGTGAAAAATGACATTCCATTTTCGTGTATCGGAACAGGAGTTGG
s cb4.chrX              10731943 66 + 21540570 TTTGCAGGAATTGGCATTCTTCAGAGAGCATGACGTGCCATTTTCTTGCGTTGGTACAGGAATGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2146053 66 -  4500979 TTTGCAGGAGTTGGCTTTCTTCAAGGAGCATGACGTCCCGTTTTCTTGCATTGGTACTGGAGAGGG
i caeRem4.Crem_Contig0  I 55 C 0
s caeSp111.Scaffold626      3100 65 -  1189296 TTTGCAGGAACTCgagtttttcaagaaa-atgatgtgCCGTTTTCTTGCATTGGGACTGGAATGGA
i caeSp111.Scaffold626  I 40 I 24
s caePb3.Scfld02_0       3659938 66 +  4147112 TTTGCAGGACTTggcgtttttcaaaaagcatgACGTCCCGTTTTCTTGCATTGGTACAGGAGTTGG
i caePb3.Scfld02_0      I 39 I 6
s caeJap4.Scaffold18194   526090 66 +   823664 TTTGCAGAACCTTGCGTTTTTCAAGCAGCATGACGTCCCCTTTTCGTGTATTGGAACAGGAGTGGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-10601.000000
s ce10.chrX              5376713 22 + 17718866 ---------TG-ATTCCGACAATGTACTGAA-T
s cb4.chrX              10732009 19 + 21540570 ---------AATATTAGACGATAA---TGAA--
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2146119 19 -  4500979 ---------AA-ATGCGACCAACG---CGAAT-
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3660010 18 +  4147112 ---------AA-ATCACAGCAGCG---CTGA--
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194   526156 22 +   823664 AGTTCCCGATA-ATCACTCGGAA----------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626      3165 24 -  1189296 I

a score=26566.000000
s ce10.chrX              5376735 47 + 17718866 GCAAGACCGTCTGTTGGAGCGTGGTTGGATGATTTCTTCTTTCCTAG
s cb4.chrX              10732031 45 + 21540570 AGAAGACCGTCTGTGGGAGCGTGGTTAGATGAAGTCCGTTT--TTAT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2146141 47 -  4500979 GAAAGACCGTCTGTTGGAAAATGGCTCGatgattttcttttccctgc
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626      3189 47 -  1189296 GAAAGACCGTCAGTTGGAGCATGGCTAGATGACTTGCTATTTCCTAA
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       3660028 45 +  4147112 --GAGACCATCAGTTGGGGCATGGTTGGATGATCTTTTCTTTCCAAG
i caePb3.Scfld02_0      C 0 T 1085
s caeJap4.Scaffold18194   526178 44 +   823664 GAAAGGCCTTCAGTTGGTGCTTGGCTTGATAATTTCCTGTTTAG---
i caeJap4.Scaffold18194 C 0 C 0

a score=1536.000000
s ce10.chrX              5376782 3 + 17718866 AGA
s cb4.chrX              10732076 3 + 21540570 TGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2146188 3 -  4500979 tga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      3236 3 -  1189296 AGA
i caeSp111.Scaffold626  C 0 T 1178
s caeJap4.Scaffold18194   526222 3 +   823664 AGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3660073 1085 +  4147112 T

a score=300.000000
s ce10.chrX              5376785 1 + 17718866 C
s cb4.chrX              10732079 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   526225 1 +   823664 C
i caeJap4.Scaffold18194 C 0 T 1497
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T
e caeRem4.Crem_Contig0   2146191 0 -  4500979 C

a score=-471.000000
s ce10.chrX              5376786 13 + 17718866 ACGA---TTCCGGTTA---------
s cb4.chrX              10732080 25 + 21540570 ACTATGTTTTCGTTTCTTCTTGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2146191 16 -  4500979 ataatttttccggtta---------
i caeRem4.Crem_Contig0  C 0 T 1485
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T

a score=661.000000
s ce10.chrX              5376799 185 + 17718866 AATGATATGAAATTGTGTGTGGTGAATTTGATTTTAAGAATTAACCATTTGAACACACattaaattattttattttaaaaataattttttGCGGATCGTTTGATATTTTG---------------TCATTGGTTTTGTCTTGCTTTTTCATTGCattaaaatataattatttt----aaatattttaGATTTATCAGTTATTGG
s cb4.chrX              10732105 173 + 21540570 TGTGATAAATATTGATG------GGATTGGGGTAcaa----taaaaatt---acaaagatTACAT----------------TGAATTTTGACAGgtcactgaaaatttggcaaGAACAACGAAATTCATCAGTTTGGTCTAGActattcaaatttggaaaatttgattatttcgtaaaaacattttaa--ctatcaatttctgg
i cb4.chrX              C 0 T 1510
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T
e caeRem4.Crem_Contig0   2146207 1485 -  4500979 T

a score=0.000000
s ce10.chrX              5376984 612 + 17718866  
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e cb4.chrX              10732278 1510 + 21540570 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T
e caeRem4.Crem_Contig0   2146207 1485 -  4500979 T

a score=7613.000000
s ce10.chrX              5377596 217 + 17718866 GAATGCCAAGACCAAAACTAGATTTGCCACCTCTTAGAGAAACAATTCCCGAAGTGTTGAAAAACGGTGCACTTGGTTATATCTGTGTGTCCGGTAGAATTCTAAGCGTTCCGGAAAATCTGCTTTATGGTGGAGAAAGAATCGGAAATGGTGAAGGACAATCAGCAGTGTATCGTCTTATTTACAACGGAAAACTTATTGCAAGAAAAGTTTGTTT
s caeRem4.Crem_Contig0   2144722 217 -  4500979 GAATAGCCAGACCAAAATTAGATCTCCCTGAACTGAGAGAGCCGGaagttgactttttgaaaaatggaccATCTGGTCACATCTGTCTCTCAGGTGTGCGACTTGGTGTTCCACCAGACATGATCACCGGTGGTACAAGGATTGGAAGTGGCGAGGGACATGCGGCAGTTTATCGTTTGGTTTATAATGGAATTGTTATTGCACGAAAAGtttgttt
i caeRem4.Crem_Contig0  T 1485 I 85
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e cb4.chrX              10732278 1510 + 21540570 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T

a score=0.000000
s ce10.chrX              5377813 252 + 17718866 GCATTTTGCCTTTCATTATAGCTGAATATGTTTTGAAAACGTTCATTCGCTTGTTTAATGTTTTATTGCATTTTTTGTTCCAGTTGTCTTTTTTAGTTTGCATGTCTACTTACCTATCTGAAAACCTAAACCTCAGAAAACCTAAGTTTCACAATCATGTTTGATGGATTTGCATTTTGTGACTAAAAAACACACCTTTTTTGTTTTAATAGACAAGAACTTCAGAAACTAAAAAGTTATACTTTTTCAACA
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e cb4.chrX              10732278 1510 + 21540570 T
e caeSp111.Scaffold626      3239 1178 -  1189296 T
e caeRem4.Crem_Contig0   2144939  85 -  4500979 I

a score=1193.000000
s ce10.chrX              5378065 35 + 17718866 AAAAAAAATGAGCGGAACGTTTTATAAATTT-----ACAA
s caeSp111.Scaffold626      2061 40 -  1189296 aagaaaagtgagttgaTAATTTTGCGAATTTTGTGAACAA
i caeSp111.Scaffold626  T 1178 C 0
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e cb4.chrX              10732278 1510 + 21540570 T
e caeRem4.Crem_Contig0   2144939 85 -  4500979 I

a score=281.000000
s ce10.chrX              5378100 69 + 17718866 AACTCTAGTTTTGTATATTGTCAGGATGTAGCTG---TAAGATTGCCAAAAGGCGTAGATCAAGACTCGACA
s cb4.chrX              10730768 61 + 21540570 AATTCTAATTCTTCAGGATGTTAGAGTTCAACTAACAGCAGGTGGTGATAATGCTGATATC-----------
i cb4.chrX              T 1510 C 0
s caeSp111.Scaffold626      2101 55 -  1189296 ------AATAGCTTAGGATGTGAAAGTACAGCTGACTCCAGGttcaaacaatgaaaaaatc-----------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T
e caeRem4.Crem_Contig0   2144939 85 -  4500979 I

a score=1638.000000
s ce10.chrX              5378169 7 + 17718866 AATAAGC
s cb4.chrX              10730829 7 + 21540570 AACAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145024 7 -  4500979 AATAAGA
i caeRem4.Crem_Contig0  I 85 C 0
s caeSp111.Scaffold626      2156 7 -  1189296 aatcata
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3660073 1085 +  4147112 T
e caeJap4.Scaffold18194   526226 1497 +   823664 T

a score=2284.000000
s ce10.chrX              5378176 8 + 17718866 TGATGGCA
s cb4.chrX              10730836 8 + 21540570 TGTTAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145031 8 -  4500979 TGTTGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2163 8 -  1189296 tgctgaat
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   524729 8 +   823664 TGTTAGAG
i caeJap4.Scaffold18194 T 1497 C 0
e caePb3.Scfld02_0       3660073 1085 +  4147112 T

a score=151022.000000
s ce10.chrX              5378184 310 + 17718866 AAAAAGTTACGAGAAGTAAATGTTATCAATGGGTGTGCTCCATGTCCGTTCATTGTGCATTTCTTTGGATATTACGTTCACAAATATAGAGATGTATGATT-------------------------------TAAAAAATTTTGGTTAAAGCATTGTAAAATAGGCCAA------ATTT------TTACAGTGCGTGAAAATTCATATCTTCATGGAAGAAATGGCTCTCAGTGCATCAGTTCTCAAAACTGAAGCTTTGAAGCAAGGTGGAGCGATTCCAGAGTTTGTAATTGGACGTATCGTTTGTTCTGTAATTCACGCAATGTGG-TTTTTAAAGGATAGATTGGTAAAC
s cb4.chrX              10730844 323 + 21540570 AAGAAACTTCGAGAAGTGGATGTTATCAAAGGATGTTCTCCGTGCCCATTCATTGTTCACTTCTACGGTTACTATGTTCATAAAAGTGTTGGGGTAAGCTTAAAAACCGTAACATAATCTGGgatgctttttgaaaaaatcatacttg-----------------ttta------attt------tttcagatcgtGAACATTCACATTTTCATGGAAGAATTGGCATTGAGCGCTTCattcttgaaaaaagagatcctaagaagaaaagaaactaTTCCAGAATTTGTGATCGGCCGAATCACCTGCTCTGTTGTTCATGCGTTGtgg-tttttgaaagaaaaaatggtgaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145039 302 -  4500979 AAGAAATTACGTGAAGTTAATGTTATAAAGGGCTGCTCTCCGTGTCCGTTCATTGTTCATTTTTATGGATATTATGTTCACAAAGTAATTGGagtaagttt-----------ttcttttcaaattgcttctgtgaaaaatta----tt-----------------ttta------a---------tttcagtgcgtgaatattcatattttcatggAAGAATTGGCTCTGAGTGCATCGTTCCTAAAGAGAGAAATTAGTGAGAGAGGGCAGCAGATACCCGAATTTGTAATTGGTCGCATCGTCTGTTCTGTCACTCATGCCCTGtgg-tttttgaaggaaaaaatggt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2171 299 -  1189296 aaaaaactacgtGAAGTGAATGTAATAAAAGGGTGCTCATCTTGTCCCTTTATTGTTCATTTTTACGGATATTACGTTCACAAAGATCGTGGAGTGAGTCT--------------------------------AAAAACGTAGTGTTACAA--------------CTAA------ACAT--TGTATTTTAGTGGGTGAacattcatattttcatgGAAGAACTAGCTCTAAGCGCTTCGtatctgaaaagagaagtgaGTAGCAGAGGCGAGAAAATTCCCGAATTTGTCATTGGCCGTATCGTTTGTTCGGTTGTCCATGCATTGTGGTTtcttgaaagagaaaatggtaaa-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3658988 320 +  4147112 AAGAAGCTACGAGAAGTCAATGTGATAAAAGGATGCTCATCATGTCCGttcattgttcatttttatggGTACTTTGTTCATAAAAACCAAGGGGTAAGTTT-------------------GTTTTGCtttggaaaaaactcaaaatttgaa--------aacattctga------acATACCTGATTTTAGTGTGTGAACATCCACATCTTTATGGAAGAGCTAGCTCTGAGCGcttcatatttgaaaaaagaagtcgaCAGTCGGAACCAGAGAATTCCAGAGTTTGTAATTGGTCGTATTGTTTGTTCCGTCACCAACGCTTTATGG-TTcctaaaagagaaaatggtAACT
i caePb3.Scfld02_0      T 1085 C 0
s caeJap4.Scaffold18194   524737 301 +   823664 AAGAAAATGCGAGAAGTCTATGTAATTAAGGGGTGCGCAAATTGCCCATTTATTGTGCacttttacggattttacgtcAACCGAGTCAGAGATGTAAGTAT-----------------------------TGTAAAAATTGGCAGTTT-----------------CCTATAAATTATTT------GTTCAGTGCGTTAATATTCACATCTTTATGGAAGAACTTGCTCTAAGTGCATCAACGTTGATTAAAAGATGcaaggaaaaaggaaaatcgaTACCGGAGTTTATAATAGGAAGAATTGCATGTTCCGTCACATCAGcgttattt-ttcttgaaaacaaaaatggtaAGC
i caeJap4.Scaffold18194 C 0 I 416

a score=-11152.000000
s ce10.chrX              5378494 21 + 17718866 TTTTCtatattttaattattt-------------------
s cb4.chrX              10731167 27 + 21540570 -------------aacgACTTTTTCGTACCAGAATGAGTT
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2145341 13 -  4500979 -----------------actttt----------attattg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2470  9 -  1189296 -------------aa--attcac----------a------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659308 17 +  4147112 TCTTACA-----TAA--ATCTtt----------a------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525038 416 +   823664 I

a score=-3423.000000
s ce10.chrX              5378515 22 + 17718866 --------aaaattCC--------------AAAGTATAAGATGT
s caeRem4.Crem_Contig0   2145354 27 -  4500979 --------aaaactaCTGTCTTTAATGTTGAAAGC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2479 23 -  1189296 gaaaatccaaaataac--------------AAAGAAT-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659325 19 +  4147112 gcaa----aaactgaa--------------aaggcCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525038 416 +   823664 I
e cb4.chrX              10731194  6 + 21540570 I

a score=122982.000000
s ce10.chrX              5378537 168 + 17718866 TTCCAGCAAATCATTCATCGGGATATTAAACCAGGCAATATTTTGATTGACTATGATGGGAGAGTCA-------------------------------AAATTTGCGATTTTGGAATATGTGGGATTCTAGAAAATTCTATTGCTGTTTCAGATACAGGGTGTCAACAATACACTGCTCCTGAAATCCTTGTGGTAAAA
s cb4.chrX              10731200 168 + 21540570 TTACAGAACATCATTCACCGAGACATAAAGCCATCAAACATCTTAATTGACAACGACGGAAGAGTGA-------------------------------AAATCTGTGACTTTGGAATCAGTGGAGTTCTCCAGGATTCTCTTGCAGTTTCAGCAATTGGCTGCCAGCAATATACTGCTCCCGAAATCAACGCGGTTTGA
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2145381 165 -  4500979 TTCCAGCAAATCATTCACAGAGACATCAAGCCATCCAATATATTGATTGATAATGATGGAAGAGTGA-------------------------------AGATTTGTGATTTTGGAATCAGTGGAATCCTTCAAAATTCTCTCGCTATCTCCGCAACAGGCGTTCAACAATACACAGCGCCGGAAATCAATGAAGTA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2502 168 -  1189296 TTACAGCAGATAATTCATCGAGATATCAAACCATCCAATATCTTGATTGATCATGATGGTCGAGTTA-------------------------------AAATCTGTGATTTCGGTATTAGCGGAGTTCTACAAAATTCGGTCGCAATGTCGGAAACTGGTTGTCAGCAATACACTGCCCCAGAAATCAACGAGGTTTGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659344 199 +  4147112 TTTCAGCAAATTATCCATCGAGATATAAAACCATCCAATATTTTGATTGATTACGACGGGAGAgtgaaaatttgtgatttcGGTATCaNNNNNNNNNNaaaTTTGTGATTTCGGTATCAGTGGGATTCTTCAGAATTCCATCGCGGTTTCACAAACGGGATGCCAACAGTATACAGCCCCAGAAATTAATGAGCTGTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525454 168 +   823664 tttcagcaaaTGATTCACCGAGATGTAAAACCATCAAACATCCTGATAGACAATGACGGGAGGGTGA-------------------------------AAATCTGTGACTTCGGAATTAGTGGAATTCTGCAAAATTCTGTGGCTATTTCTATTGTTGGCTGCCAGCAGTACACGGCTCCGGAAATTGCTAAGGTAAGA
i caeJap4.Scaffold18194 I 416 I 52

a score=-1577.000000
s ce10.chrX              5378705 4 + 17718866 TTTG
s cb4.chrX              10731368 3 + 21540570 TAG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626      2670 4 -  1189296 TTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659543 4 +  4147112 CTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525622 52 +   823664 I
e caeRem4.Crem_Contig0   2145546 0 -  4500979 C

a score=301.000000
s ce10.chrX              5378709 5 + 17718866 AACTA
s cb4.chrX              10731371 5 + 21540570 AATTA
i cb4.chrX              C 0 I 280
s caeSp111.Scaffold626      2674 5 -  1189296 ACTTC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3659547 0 +  4147112 C
e caeJap4.Scaffold18194   525622 52 +   823664 I
e caeRem4.Crem_Contig0   2145546 0 -  4500979 C

a score=-1375.000000
s ce10.chrX              5378714 13 + 17718866 AGATTATTGTTAA----
s caeRem4.Crem_Contig0   2145546 17 -  4500979 AGTTCATTGGGTTTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2679 13 -  1189296 TAATCAGTAGCCA----
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       3659547  0 +  4147112 C
e caeJap4.Scaffold18194   525622 52 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I

a score=148.000000
s ce10.chrX              5378727 4 + 17718866 AGTA
s caeRem4.Crem_Contig0   2145563 4 -  4500979 ACTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3659547 0 +  4147112 C
e caeJap4.Scaffold18194   525622 52 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I
e caeSp111.Scaffold626      2692 1 -  1189296 I

a score=-359.000000
s ce10.chrX              5378731 10 + 17718866 ----AAACAAAAAT
s caeRem4.Crem_Contig0   2145567 14 -  4500979 CCACAGTGGTTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2693 10 -  1189296 ----aaacttgaat
i caeSp111.Scaffold626  I 1 C 0
e caePb3.Scfld02_0       3659547  0 +  4147112 C
e caeJap4.Scaffold18194   525622 52 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I

a score=-761.000000
s ce10.chrX              5378741 19 + 17718866 TTCAGAAAGGAGTAAGTAA
s caeRem4.Crem_Contig0   2145581 19 -  4500979 TTTAGCAATCGCTGGTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2703 19 -  1189296 ttcagttAGCTTTGGTGCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659547  5 +  4147112 TTCAG--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525622 52 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I

a score=38750.000000
s ce10.chrX              5378760 71 + 17718866 CTCGCCAGGGTATTCTATCAAAAGCGATATTTGGTCGCTAGGAATCACCATCTTTGAGCTTGCTACTTTGA
s caeRem4.Crem_Contig0   2145600 71 -  4500979 CTCGCCAGGCTACTCTATCAAAAGTGATATTTGGTCACTTGGTATCACTATCTTCGAGTTGGCCACACTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2722 71 -  1189296 TTCACCAGGATATTCAATCAAAAGTGATATTTGGTCTCTGGGAATCACTATTTATGAACTTGCAACATTAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659552 70 +  4147112 -TCGCCTGGATATTCAATCAAAAGTGATATATGGTCTTTGGGAATCACCATTTATGAACTTGCAACACTAA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18194   525674 71 +   823664 ATCCTCTGGTTATTCGGTAAAAAGTGACATCTGGTCACTAGGAATAACTGTTTATGAGCTGTCAACATTAC
i caeJap4.Scaffold18194 I 52 C 0
e cb4.chrX              10731376 280 + 21540570 I

a score=917.000000
s ce10.chrX              5378831 4 + 17718866 GGTA
s caeRem4.Crem_Contig0   2145671 4 -  4500979 CGTa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      2793 4 -  1189296 CGTG
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   525745 4 +   823664 AGTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3659622 9 +  4147112 I
e cb4.chrX              10731376 280 + 21540570 I

a score=910.000000
s ce10.chrX              5378835 1 + 17718866 A
s caeRem4.Crem_Contig0   2145675 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626      2797 1 -  1189296 A
i caeSp111.Scaffold626  C 0 I 26
s caePb3.Scfld02_0       3659631 1 +  4147112 a
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18194   525749 1 +   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10731376 280 + 21540570 I

a score=-547.000000
s ce10.chrX              5378836 2 + 17718866 -TC
s caeRem4.Crem_Contig0   2145678 2 -  4500979 -tc
i caeRem4.Crem_Contig0  I 2 C 0
s caeJap4.Scaffold18194   525750 2 +   823664 GT-
i caeJap4.Scaffold18194 C 0 I 97
e caePb3.Scfld02_0       3659632 0 +  4147112 C
e cb4.chrX              10731376 280 + 21540570 I
e caeSp111.Scaffold626      2798 26 -  1189296 I

a score=-4183.000000
s ce10.chrX              5378838 55 + 17718866 TGCATTTTTTTC-----------------AGTAAAAAAACCATTTTTGTTATTTTTTTTAGCTAGATCAAGA-------
s caeRem4.Crem_Contig0   2145680 67 -  4500979 tttgtttttatgatTGCTCACTCttatcaaatacaaaaa----------tgtggTATTGTGTCGAGTCAATGGACTA--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3659632 30 +  4147112 -----------------------------tatacaaaaa--------------------aagcaagtgtagagactttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525752 97 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I
e caeSp111.Scaffold626      2798 26 -  1189296 I

a score=-1937.000000
s ce10.chrX              5378893  9 + 17718866 TTCATTAAA------
s caeRem4.Crem_Contig0   2145747 14 -  4500979 TTCATGTGAATAAA-
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626      2824  9 -  1189296 ------TGTATTGTA
i caeSp111.Scaffold626  I 26 C 0
e caePb3.Scfld02_0       3659662  0 +  4147112 C
e caeJap4.Scaffold18194   525752 97 +   823664 I
e cb4.chrX              10731376 280 + 21540570 I

a score=11149.000000
s ce10.chrX              5378902 68 + 17718866 TTTCAGGTATCCATACCCAGTTGGATTT-TCGGAGTTCACACTTT-TGTCTGCTATTGTGAC----AACACCAG
s cb4.chrX              10731656 68 + 21540570 GTTCAGACTGCCTTACCCAACAGACCTC-CAAGAGTTTGCTTTGACTGCCTG-TATCAATTC----TTCAGCAG
i cb4.chrX              I 280 C 0
s caeRem4.Crem_Contig0   2145776 68 -  4500979 TTTCAGGTTCCCGTACCCTTCTGATATCTCAGGAATATGTT-----TGTCTG-GAGCAATCTATAATTCAGCAC
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626      2833 68 -  1189296 TTACAGGTTCCCATATCCAGCTGGCTTA-ACTGAATTTGCTCTCTCTGCCTA-TATCAATTC----AACTCCAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659662 68 +  4147112 tttcagatttccttATCCTTCTGGCCTC-TCGGAGTTTATGCTGTCTGCCCA-CATCAATTC----TTCCCCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   525752 97 +   823664 I

a score=59133.000000
s ce10.chrX              5378970 289 + 17718866 CACCCTACCTAGAAAGGGTA--------ACATTTTCAAACAATTATTGAAT------AAAATCATGC----------------CGTAA-----------------------------TTT-TTAACAGGGAACATACTCCGATAGTCTTGTTGAATTTGTTAGTAAACTACTCCAAATAAAAGAAGCCGACCGACCAAGCATTGTTGCCGTAAAGGTGAGTGAAACA-----------------TTGGGCATGACC--TCCGACTA--ATCTACACAAATTAGGAAAAAAATTGCAGGACCTCCAGTTTTTCTTGAATAATGACACTCCATTTCTGTGTATTGGAACAGGAGTTGGAGACTCTGAC---AATA
s cb4.chrX              10731724 299 + 21540570 CGCCTCGTctaaaaacagta--------aaaacgt----------ttgtgt----aaaacttcaaca----------------aaaaa---------------------------ttaac-cTTTAAGGGCGAACACAGCGACATCCTTGTGGATTTTGTTGCAAAATTACTCCAGTTTGACATAGACAACCGACCAAATCTAACTGGAGTTCAGGTAAGAGGAAAAAACATGGATGTTC---TTTTACTTTGATAG-GAAGTCTAATGCGTGTCGTAATTGG-AGGAAATTTGCAGGAATTGGCATTCTTCAGAGAGCATGACGTGCCATTTTCTTGCGTTGGTACAGGAATGGGAATATTAGAC---GATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2145844 289 -  4500979 CACCGCGTCTGCGAAGAGTA--------A----------------TTCAGTGatgaagaaatcaata----------------aataa------------------------ctCTTCTC-TTTACAGGGAGCATTTAGTGACAACTTGGTGGACTTTGTCGAGAAGCTACTTCAGAAAAGCAAAGACGATCGACCGAATCTCAACGGAGTTATGgtaacaaaaaacaac--------------tgcACTATACTCGCCGAGTTTCCAATTTGTTCTAATTGG--TAAGATTTGCAGGAGTTGGCTTTCTTCAAGGAGCATGACGTCCCGTTTTCTTGCATTGGTACTGGAGAGGGAAATGCGACC---AACG
i caeRem4.Crem_Contig0  C 0 I 74
s caeSp111.Scaffold626      2901 280 -  1189296 CTCCAAGCCTCCAAAAGGTa--------agatcag----------------------aaaatgaaaagtggcAGTTTAGGAATAAAAA-----------------------------CAT-GTCACAGGGAGCATTTAGTAAAAACTTGGTCGATTTCGTTGGAATTGtgcttcagaaaaacaaagacgATAGACCAAATCTAAACGGCGTGCAGGTGAATAA---------------------------TTGCACATCTCTTCTA--ATTCATAGTAATTAG--AAAGATTTGCAGGAACTCgagtttttcaagaaa-atgatgtgCCGTTTTCTTGCATTGGGACTGGAA-TGGAACCGCTAACGGGAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3659730 288 +  4147112 CACCCCGGCTGAAGAAAGTATGCAAGCGAAATCAT----------Tttccc------aaactcaaaa----------------aaaac-----------------------------cataattgCAGGGTGAATTCACTGACGATTTGgttcaatttgttgaaaaactactccaaaaaaacaaagacgATAGACCAAATCTCAACGGTGTTCAGGTGAGTAAAAAC-----------------CTAACTTTGCCCTTTTTGTCTA--ATTGGTGCTAATTAG--GAAGATTTGCAGGACTTggcgtttttcaaaaagcatgACGTCCCGTTTTCTTGCATTGGTACAGGAGTTGGAAATGCAAAT---CACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   525849 321 +   823664 CACCTCGATTGGACCCGGTG--------AGAGC------------TTcag-------aagttgaaaa----------------aaaaaatataaatatgtATGCTtacattattaatttt-tttaaaggcaaAATTCAGTGCAAATCTCGTGGAATTTGTGAGAAGTCTACTGCAAATCGATGCAAACAAAAGACCACACTTTGACGATGTTAAGGTAAAAATAGAGAAATCAGATCAGCAAAACACTCTTGAGACATAACGTGCC--CTTTCTACTAATTAG---CACATTTGCAGAACCTTGCGTTTTTCAAGCAGCATGACGTCCCCTTTTCGTGTATTGGAACAGGAGTGGGAGTTCCCGAT---AATC
i caeJap4.Scaffold18194 I 97 C 0

a score=16332.000000
s ce10.chrX              5379259 49 + 17718866 TTCTGAATGAAAGACCGTCGGTTGGAGCATGGCTTGATGACCTTTTCTT
s cb4.chrX              10732023 48 + 21540570 ATGAAGCTAGAAGACCGTCTGTGGGAGCGTGGTTAGATGAAGTCCGTT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626      3181 49 -  1189296 ACAATACAGAAAGACCGTCAGTTGGAGCATGGCTAGATGACTTGCTATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3660018 49 +  4147112 GCAGCGCTGAGAGACCATCAGTTGGGGCATGGTTGGATGATCTTTTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   526170 49 +   823664 ACTCGGAAGAAAGGCCTTCAGTTGGTGCTTGGCTTGATAATTTCCTGTT
i caeJap4.Scaffold18194 C 0 I 1162
e caeRem4.Crem_Contig0   2146133 74 -  4500979 I

a score=-3699.000000
s ce10.chrX              5379308 20 + 17718866 CTCCACAG----TTTA--------ATGCTCTT--------
s cb4.chrX              10732071 28 + 21540570 ------------TTTATTGACACTATGTTTTCGTTTCTTC
i cb4.chrX              C 0 I 3
s caeSp111.Scaffold626      3230 26 -  1189296 TCCTAAAGAATGTTGATC------Atgtgatt--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3660067 29 +  4147112 TCCAAGTAA---TTGATCGGTGTTATGATATT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e caeRem4.Crem_Contig0   2146133 74 -  4500979 I

a score=-3136.000000
s ce10.chrX              5379328 21 + 17718866 ---TTGTTTGCTAAATAT-----AATTTT-
s cb4.chrX              10732102 26 + 21540570 ---TTCTGTGATAAATATTGATGGGATTG-
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2146207 21 -  4500979 ---ttttttgatatgtat-----GGTTTT-
i caeRem4.Crem_Contig0  I 74 I 670
s caeSp111.Scaffold626      3256 17 -  1189296 ttatttt--------tga-----aaatatc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3660096 25 +  4147112 TGAGTTTTTactaaataa-----aaatgtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I

a score=-1615.000000
s ce10.chrX              5379349 5 + 17718866 GGGGA---
s cb4.chrX              10732128 5 + 21540570 GGGTA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626      3273 2 -  1189296 ---ga---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3660121 5 +  4147112 ---tgggA
i caePb3.Scfld02_0      C 0 I 1370
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e caeRem4.Crem_Contig0   2146228 670 -  4500979 I

a score=1310.000000
s ce10.chrX              5379354 16 + 17718866 GGGAA-AAAATTTCAGA
s cb4.chrX              10732133 16 + 21540570 -caataaaaattacaaa
i cb4.chrX              C 0 I 2144
s caeSp111.Scaffold626      3275 16 -  1189296 ccaat-aaaatttcaaa
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3660126 1370 +  4147112 I
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e caeRem4.Crem_Contig0   2146228 670 -  4500979 I

a score=197.000000
s ce10.chrX              5379370 25 + 17718866 TTCCCGTCGATAAAT--ATTTTCAATT
s caeSp111.Scaffold626      3291 27 -  1189296 ttggaGTTTATAGTTGGAATTTCAGTT
i caeSp111.Scaffold626  C 0 I 573
e caePb3.Scfld02_0       3660126 1370 +  4147112 I
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeRem4.Crem_Contig0   2146228 670 -  4500979 I

a score=0.000000
s ce10.chrX              5379395 1057 + 17718866  
e caePb3.Scfld02_0       3660126 1370 +  4147112 I
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeSp111.Scaffold626      3318  573 -  1189296 I
e caeRem4.Crem_Contig0   2146228  670 -  4500979 I

a score=413.000000
s ce10.chrX              5380452 31 + 17718866 TTCATTCAATTCACACTTTCCATATATTTTC--------------
s caeSp111.Scaffold626      3891 44 -  1189296 ttcattaaCTTTG-ACTTTTCATATCTCTTCTACCAATCTCTGTT
i caeSp111.Scaffold626  I 573 C 0
e caePb3.Scfld02_0       3660126 1370 +  4147112 I
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeRem4.Crem_Contig0   2146228 670 -  4500979 I

a score=1063.000000
s ce10.chrX              5380483 11 + 17718866 CTATTTTT---TTC
s caeSp111.Scaffold626      3935 14 -  1189296 CTATTTTTGGGata
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3661496 14 +  4147112 CTATTTTTAGTGTC
i caePb3.Scfld02_0      I 1370 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeRem4.Crem_Contig0   2146228 670 -  4500979 I

a score=60467.000000
s ce10.chrX              5380494 165 + 17718866 AAAAATCAAAAACTGTGGTTA-CAATGTAATCAAAAAATCTGGA---AAACCCGCAGGCAGACGAGCAGGAAAATAGAAAATAAATTAGCTCTTCCGGGCTTTTATGAGCTC-------------TTCCTTTGATTGCATCAATTGTTGTTTCACATTCACACGTTGGCA-ACTATTCATAGA
s caeRem4.Crem_Contig0   2146898 170 -  4500979 aaaaaccaaaaa---tgatcA-GGATGTAATCGAAAAATCTGGAGGGTGAAAGGCAGGCAGACGag-gcaaaaaaggaaaataaattAGCTCTTCCGGACTTTTATGACCTCTGATTCTATTTTGTTCCTTTGATTGCATCAATTGTTGCTGCACATCTTTAT--------ACTATTCATAGA
i caeRem4.Crem_Contig0  I 670 I 160
s caeSp111.Scaffold626      3949 179 -  1189296 aaaaaccaagaa---tGATCAGGGATGTAATCGAAAAATCTGGAGGGGAAAAGGGAGGCAGACtag-ggaaaagaagaaaataaattagcTCTTCCGGACTTTTATGACCTCTGATTCTATGCCTTTCGTTTGATTGCATCAATTGTTATTTCACACTTTTACGTGCACAAACTATTTATAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3661510 177 +  4147112 AAGAACCAAAAA---TGATCA-GGATGTAATCGAAAAATCTGGA-GGGAAAGGGAAAGCAGACgag-gcaaaaaaagaaaataaattagcTCTTCCGGACTTTTATGACCTCTGAttctattttcttcctttGATTGCATCAATTGTTGTTTCACACCTATACGTTTACAAACTATTCATAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I

a score=575.000000
s ce10.chrX              5380659 3 + 17718866 ATT
s caeSp111.Scaffold626      4128 3 -  1189296 GTT
i caeSp111.Scaffold626  C 0 I 108
s caePb3.Scfld02_0       3661687 3 +  4147112 ATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeRem4.Crem_Contig0   2147068 160 -  4500979 I

a score=-7143.000000
s ce10.chrX              5380662 462 + 17718866 CTCAATCTATTCTGATTCTATCGAAAATTGAAATTCAACAACAATTTAGACAACTATAAAATCTTTCTTGTCAGCTTTCTATTAATATACTTTATTTTTTATTCTATTTTTTGACAAGGAAAGTCATTCAGCTCCCTTTTTCATTGATGACATTGCAGAAAAATTTCATTTTTATTTTTTGACTGAAAAATGATTTCGAAAAATTAAAATTTCCGGATTGCTTTCAGACACAACAAAAATCTGGAAAAATAAACTTTTATAGAAATTTTATGGGACTCTGAAGTTGTAAAAAATGCACTGTAAAATTTTCAAATCGACCTTTTTCAAATTCAAAGTGCTCATCCGTCGTGAAATTTTTTATTGTGACCTATTTAAAAAGTCCTATTTCTCCTCACATAGATTTCATTCAAAGGTCTAAAAGTGAGATGAAATACTTTCTTTGTAAGCTTTATGAGCTACGTC
s caePb3.Scfld02_0       3661690 135 +  4147112 TT----------------------------------------------GATATTTATAAA---------------------------TACCTCACTCT---------------------------------------------------------------GATTCCATAGTTATTT-------------------------------------------------------------------AGAGATAAA----TATAG----------------TGAAGTTATGTGAAAT----------------------------------------------------CGCAAAAAGCTTCCTTgttatttattta--------tatttttgttctcgT----TTCCTTCAAAAG----------------------------------------AACTCCGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeSp111.Scaffold626      4131 108 -  1189296 I
e caeRem4.Crem_Contig0   2147068 160 -  4500979 I

a score=-302.000000
s ce10.chrX              5381124 51 + 17718866 CATTTGAAAATAACAAC--AAACCTGGGTAACGGTGTCAGCCAACATTCATTT
s caeSp111.Scaffold626      4239 43 -  1189296 CATATAAGAATAATAACTAGAGAAATTTTAACGGTGTCAACCA----------
i caeSp111.Scaffold626  I 108 C 0
s caePb3.Scfld02_0       3661825 36 +  4147112 ---TCCAAAATAACATCTGAAGGTAGTTTTAC--CGTCAAT------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e cb4.chrX              10732149 2144 + 21540570 I
e caeRem4.Crem_Contig0   2147068 160 -  4500979 I

a score=-1318.000000
s ce10.chrX              5381175 13 + 17718866 CTTTTCAACTGGT---
s cb4.chrX              10734293 12 + 21540570 CCCTTCA----ATGAC
i cb4.chrX              I 2144 C 0
s caeSp111.Scaffold626      4282  2 -  1189296 -----------GT---
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3661861  0 +  4147112 C
e caeJap4.Scaffold18194   526219 1162 +   823664 I
e caeRem4.Crem_Contig0   2147068 160 -  4500979 I

a score=84887.000000
s ce10.chrX              5381188 437 + 17718866  
s cb4.chrX              10734305 442 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2147228 429 -  4500979  
i caeRem4.Crem_Contig0  I 160 C 0
s caeSp111.Scaffold626      4284 434 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3661861 449 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   526219 1162 +   823664 I

a score=67278.000000
s ce10.chrX              5381625 154 + 17718866 ATTTGGTTTTTGAAACTTGTCGGGCTT--CGCG-GAGTAGAGTAGGAATAAGAAGGAAACAGCGACGG--CGGCCCAGTGCGGATAATGAAATAAATACATA-----TCTTCGAATCAAGAGAATGATTTTCTCACATTACTCATGGCTTCCCGC---TCTCTTGGC
s cb4.chrX              10734747 144 + 21540570 ttatgatttttgagactTGTCGGGGCT--TCCG--------------TCAGGGAGGAAGCTAAGGCAA--GGACCCCGAGCAGATAATGAAATAAATACATATAGCTGCTTCGAATCAAGAAGATGATTTTCTCACATTACTCACGGCTTCACA-----TCCTCTGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2147657 121 -  4500979 ---tgatttttgaaacttgccGGGGCT--TCT---------------TTGAGAAGGAAACGGGAG--------------GCAGATAATGAAATAAATACATA-----GCTTCGAATCAAAAGAATGATTTTCTCACATTACTCATGGCTTCAC-------CCTCggc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      4718 125 -  1189296 ---TGATTATTGAAACTTATCTGGCTTC-TCTG---------------------AGATACGGAAG-----AGAGCCAGTGAGgataatgaaataaattcatA-----GCTTCCAATCGAgagaatcattttctcacaTTACTCATGGCTTCGT-------TTATGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3662310 132 +  4147112 ---tgatttttgaaacttgtcgGGCTTCATCCG--------------CCGAGAAGGAAACGGGAG-----GGC-CCAGTGAAGATAATGAAATAAATACATA-----GCTTCGAATCAAGAGAATGATTTTCTCACATTACTCATGGCTTCGC-------TCTCCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   527381 158 +   823664 ACCTTGTTCTTGAAACTTGTCGGGCTTCTTCTTTGCGGagaaaaagaacaggaaagagaagaaggaagaaaaaaagggtCTAGATAATGAAATA----CATC-----GGCTCAAATCATGATACCGATTTTCTCACATTACTCATGATTTTGCCCCgattcttttgc
i caeJap4.Scaffold18194 I 1162 I 1380

a score=42867.000000
s ce10.chrX              5381779 269 + 17718866 CG----TGGC------------------GGTTCA--CTGAAACTCGAAGATTTTCCCTCGTCTC--TTC-----CAATGT---------GCTGTT-------CATTGAT----ACCT-AATTCAATTTCTTTT--ACTGAAAAGATAGGTGGCATACTGATTACCT---GACTTGTTTTT--------AGGAAAAT-----------------AGGGGGATTATTTATGAAAAGACGACTATGAGAAATCAAATAAAAAGCGAGAAAAT---GGAAAAATGG--AAAAAGCACAG-----------CTCTTATATCTTCAATTATCTTTATATGCGACAATC------------CTTTTCCGTCTGGTAACTATGGTGA
s cb4.chrX              10734891 317 + 21540570 CT-TCGTTTCCTCTTATAAATCGCAACCAGTTCGTTTTTAAACTTca------tcttttatttttattaaatACAAACTT---------GTTGTTCTGAATGCATTGATTCTCATTT-AAGATCATCACCT------CCATGATAGAGCATACCAACTGATTaattgttttcttgttttt--------aagaaaaaataggatttaagaaaaaaataggattatTTATGAATTGaggga---g-atatcaaaaagaaaagcaaAGAAAT---AGATACAAAGGAGGGAATCTATGATTTGACCACCATCCCAAATCTTCAattattttcgt------------------------ttttttcaccGGTAGTCATGGCGA
i cb4.chrX              C 0 I 875
s caeRem4.Crem_Contig0   2147778 282 -  4500979 ------tctcttcttctcatttttaactCGTTCG--TTGAAACTCAG------TCTGAGATATT--CTCAATTCAAAAAC---------GCTGTT-------TATTGAT----ACGT-AATTCCATTACTTTT--ACTCAAAAGATAGGAGACTAAACGATTAGTT-TATgcttgttttt--------aagaaaaa--------------------aggattatTTATGAATTGGCGAA---GAAGATAAAGACGGAAAGCCA--AAAt---aggagaaaat--agaaatctcTGATTT-------CTCTCTTGTCTTCAATTATCCTCATCTGCCAAAATC------------CTTTTTTGTCTGGTAGCTATGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      4843 290 -  1189296 CC----CCGCGTCTTTTTATTCACAACTTGTTCG--TTGAAACTCCG------TC--TGAGAAT--TTA-----AAAGTCGGAAAAAGATTTGTT-------TATTGAT----ACGT-AACTCCGTCACCTTTTCTCTAGAAAGATGTGAGACCAACTGGTTACTT---TACttgttttt--------aagaaaat--------------------gGGATTATTTATGAATCGAGG------------Cagataaaaaggaa--aaataggaggagaaa----aggaatctatgattt-------cttcaatatcttcaattatctttatctttttctatcttcttccatctttttttctgtctggTAACTATGGAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3662442 278 +  4147112 CCATTTCCGC-----TCCATTCTCTACTTGTTCC--TTGAAACTCAG------TATGTGATact--cta-----gaattt---------tttgtt-------tattgat----aCGTAAATTCCATCACTTTTCCGCTCAAAAGATGGGAGACCAACTGATTACTT---TACTTGTTTTTATCATTaaaagaaaat--------------------aggattatttatgaattgaagaa-----agatataaagaaataggaa--aaat---agaaaaaa----aggaatctttGATTC-------CTC--ATATCCTCAA------TTATCCAATgcaatc---------cttttttcttgtctggTAGCTATGGCga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I

a score=538.000000
s ce10.chrX              5382048 3 + 17718866 CCT
s caeRem4.Crem_Contig0   2148060 3 -  4500979 CTT
i caeRem4.Crem_Contig0  C 0 I 343
s caeSp111.Scaffold626      5133 3 -  1189296 GCT
i caeSp111.Scaffold626  C 0 I 341
s caePb3.Scfld02_0       3662720 3 +  4147112 ctt
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I

a score=-730.000000
s ce10.chrX              5382051 619 + 17718866  
s caePb3.Scfld02_0       3662725 650 +  4147112  
i caePb3.Scfld02_0      I 2 I 30
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5136 341 -  1189296 I
e caeRem4.Crem_Contig0   2148063 343 -  4500979 I

a score=0.000000
s ce10.chrX              5382670 20 + 17718866 ATTGCCGCAAACCCTTGATT
e caePb3.Scfld02_0       3663375 30 +  4147112 I
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5136 341 -  1189296 I
e caeRem4.Crem_Contig0   2148063 343 -  4500979 I

a score=-1539.000000
s ce10.chrX              5382690 123 + 17718866 ATTTGTAACAGTTAG-------------CTATTGTTCTTTT----TTCAAA--------------TTTTTGTC--------ATTACATTTTTATTTCAAAAGTCAAAAGTTTATTTAAAA----------------------------GAAAGGGCAAACTCAATTCTGCGAACTACACTCTCGCTAA---------AT
s caePb3.Scfld02_0       3663405 199 +  4147112 atttatcgaaGTTGAGCAACTTGCTTTTCTATCGTTAGTTTTCGATTtaaaaactatctgaaaacttttcctcGAGAATTAAATGCACTTTGGAAACCGAAAccaaaattcttttgaaaatccttcatagattttgagaattttctataaaatttcGAGATCAAATGAACGGATCAGCTTTACGGTAGACGTTCCTTAT
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5136 341 -  1189296 I
e caeRem4.Crem_Contig0   2148063 343 -  4500979 I

a score=-1130.000000
s ce10.chrX              5382813 8 + 17718866 ------AAATTATC
s caeRem4.Crem_Contig0   2148406 8 -  4500979 aaaTAAAA------
i caeRem4.Crem_Contig0  I 343 C 0
s caePb3.Scfld02_0       3663604 8 +  4147112 ------AGtttgtt
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5136 341 -  1189296 I

a score=22956.000000
s ce10.chrX              5382821 254 + 17718866 GGAAAGGAAGCAA---TTTTTCC--AATCTGCTGAACCATTGATAA---------GATACTTTCAATAATAAA--GTATATCTGCAAGAGAGAAAAAGCCA----GTGAACGTCATGCTAATCAC--TATTTACATCACTTTC-CTTGCC-ACCGCTTAGAACATCT------CCGTAATAGGATTGCACAAATCTGTGTCC---------AT-------------GCCCAAAATTACATCCTCTAATATCCTATCACTGACGCTGGAT-------ATTTCAGTTACTTTTCATATATGAAAGATTATTCCTT-------------
s caeRem4.Crem_Contig0   2148414 309 -  4500979 GGAAGTCAAATAA---GTCTTCACGAATCTGCTGAACCTTTGATAATCCAGGATAAGTTATTTTAGCAATAAA--GTTTTTTAC----GCGAAAGAAATCTTTGTGCGAACGTCATGCTAATAAT--CACTAACATCATTTCG-CTTATCTGCCGCCTAGAACATCCTCTTCATCGTAATAGGATTGCATAAATCTGTGAACTACTGAGCAGCCTCCTTAACACATTCCCAAATTTATTGCTTATCA-ACGTTATCTCTGACGTTAGTCTTCTCACAACACAATTGGTTTC----TTTGAATAGATGTTTCTTAAGGCTATTTTTA
i caeRem4.Crem_Contig0  C 0 I 64
s caeSp111.Scaffold626      5477 229 -  1189296 ggaagtgaaaaaa---tcttcaataaATCTGCTGAACCTTT-CTAATCCTCCGTTAGTTATTTTAGCAAAgagacaactttttt----atgaAGGAAATCATTCTACGAACGTCATGCTTACCAT--CAATAACATCATCTTG-TTCATATGAGGTTTAGAACTACC------TCGTAATAGGATTGCTTAAATCTGTGAACTGACGAGCATT-------------TATCAAGctcatttc---------ttcatctctGACGTTAGT----------------------------------------------------------
i caeSp111.Scaffold626  I 341 C 0
s caePb3.Scfld02_0       3663624 229 +  4147112 aaaaacaaaataaatctttttctcaaatctgCTGAACCTTTGATAATCCTTCGTAAGTTATTTTAGCAAGGAA--AACTTTCTTTAAAAGAAGGGAAATCTTTTTGCGAACGTCATGCTTATCATCACACTAACATCATTATGCTTCTTA------TCAGAACATC--------CGTAATAGGATTGC----ATCTGTGAACTACTGAGTAGC-------------TTCTAATTTCATTTC-------ATGTTATCTCTGACGTTAGTC---------------------------------------------------------
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I

a score=-23.000000
s ce10.chrX              5383075 31 + 17718866 ATTCTTTTCATAATTGGT-------------------TTTTTTAAACAAA----------
s caeSp111.Scaffold626      5706 59 -  1189296 -TTGTTCTTGTAATCAGTTGTTCTTCATCGAAAGgtgttcttttttggaattctaacaaa
i caeSp111.Scaffold626  C 0 I 103
s caePb3.Scfld02_0       3663853 30 +  4147112 -TTCCTATCGCAATTAGT-------------------TTCTTTTATGAAG----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeRem4.Crem_Contig0   2148723 64 -  4500979 I

a score=-500.000000
s ce10.chrX              5383106 12 + 17718866 ATCTTCATTTGA---
s caePb3.Scfld02_0       3663883 13 +  4147112 ATGTT--TCTAATCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5765 103 -  1189296 I
e caeRem4.Crem_Contig0   2148723 64 -  4500979 I

a score=-2492.000000
s ce10.chrX              5383118 113 + 17718866 GAATATTTATAA---------CTAGTGAGAATAT---CCTGTGAGACAATATGAAATGTACTTTGTTGACCTTTTATATCTCACTAATTAAAATGCTAATGTGTGTGAGAAAAGTCAAAACAGAA-----------------
s caeRem4.Crem_Contig0   2148787  97 -  4500979 --GAATTTCTAGAC-------CTTTTGTTCATAC---AAGGTGAG----TATGAGCTGTTCCTCTCTGTTCTTTTAGAGTTCGTTAATTAgga-------------aaatataatgaaaagaaaaa----------------
i caeRem4.Crem_Contig0  I 64 C 0
s caePb3.Scfld02_0       3663896 110 +  4147112 GTATGCTTCTAACCAGGAACACTTTCGACAACTCTTTGACGTG-------ATGAGCTGATAACTTTTGTTCTTATAGAGTTCACTAATTA-------------------------CAATAGAAAAGGGTTGTTGACCTAACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I
e caeSp111.Scaffold626      5765 103 -  1189296 I

a score=-3627.000000
s ce10.chrX              5383231 44 + 17718866 --------------------------TGTGCCATTTTTCTCACCCCA-----TACCTTTTTCGTCTAATCTTTTC
s caeRem4.Crem_Contig0   2148884 64 -  4500979 tatgtgatGTCTTGCCCTATACctttagttc-atcttttttataaca---------tctgttttttcagctttt-
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold626      5868 57 -  1189296 --TGTG---CCTT----------TTCAGTTCCTTATTTCTTGAAAGa---tccttttcattcttcttatCCCCTC
i caeSp111.Scaffold626  I 103 I 7
s caePb3.Scfld02_0       3664006 56 +  4147112 --Tatg----ctt----------ttcagt---ttttttttcaaaacacatttcttcttttttttttcatcccttC
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194   527539 1380 +   823664 I
e cb4.chrX              10735208 875 + 21540570 I

a score=18056.000000
s ce10.chrX              5383275 119 + 17718866 ATTTGTATTTTTTTCAGCAAAGAAAAAAACGGAAAAATGTGTGTAATCATTATTGTCTC--ATGGAGTGAAGAACC---GAA-TTTTTCATGCCCGTTTTTTTCA--------------------------TTTCTTGTTTTGGCGTCA---------------------GT
s cb4.chrX              10736083 140 + 21540570 ATGTGTCTGTTTTTCTGCAAACA------------CACGTGTGTCATCATTATTGTTAA--ACG------AGAACC---AAA--Tattcttgttcattttcttgtttatttcagtctctctctccatctcttttccctcatttctttct--tcgtttcCGACCTTAC-----
i cb4.chrX              I 875 C 0
s caeRem4.Crem_Contig0   2148966 125 -  4500979 atgtatctgtttttatGAAGATA----------------TGTGTCATCGTCATTGTTAA--ACG------AGAACCGCAAAA--TTTTCTTgtccattttcttgtttttttc-------------------tttcctgcTTTGAATTTT--GTGTTCACGACCTCACATGGT
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold626      5932 104 -  1189296 ----atttgtttttctatgaaCA--------------CGTGTATCATCATCATTGTTAAGCGCG------Agatcc---aaa-------------attttctt----------------------------ttttttgttctcatttcTAGCCCGTTCCGACCTCATCTGGG
i caeSp111.Scaffold626  I 7 C 0
s caePb3.Scfld02_0       3664069 116 +  4147112 ----ATCtgttatttttcgaata--------------tatGTGTCATCATCATTGTTAA--ACG------AGaacc---gaattttttcttgttcattttcttctg-------------------------ttttcttttttcattttt--tctctcccgACCTCACATGGT
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194   527539 1380 +   823664 I

a score=28337.000000
s ce10.chrX              5383394 25 + 17718866 TATTTC-GGATTACTGACGACATATC
s cb4.chrX              10736223 21 + 21540570 ----TT-GGATTACTGACGACACATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149091 25 -  4500979 TATTTC-GGATTACTGACGACACATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      6036 26 -  1189296 TTTTTCGGGATTACTGACGACATATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3664185 25 +  4147112 TATTTC-GGATTACTGACGACACATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   528919 25 +   823664 TATTTC-GGATTACTGACGACACATC
i caeJap4.Scaffold18194 I 1380 I 291

a score=-4436.000000
s ce10.chrX              5383419 28 + 17718866 -TCATTTATTAGGCACATCATTGATTTTC------------------
s cb4.chrX              10736244 35 + 21540570 ----TTTACATTGAA--ATATTG-TGTT-AGCGA--GATAAATcg--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149116 44 -  4500979 CTCATTTACATGGCT--ACATTGATTTT-GTTGAACGATGAATTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      6062 26 -  1189296 CATATTTACACGAGC--CCATTGATTTC-------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3664210 28 +  4147112 CTCATTTACACGACt-aacattgattttt------------------
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18194   528944 291 +   823664 I

a score=-1593.000000
s ce10.chrX              5383447 50 + 17718866 -TTATTTCTGAATTTCCATTTAAACTGAT--AGTAGTATACATGTTTAAATAT
s cb4.chrX              10736279 44 + 21540570 -caaaatatgaaaactccggaaaattgatgaaaaagtgTATATGT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149160 42 -  4500979 -tatcttctggaaaaaaaccaaaattgaT--AAAAGTGTACGCGT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      6088 35 -  1189296 TCATTCTA-GAAAGAATCcgaaaattgattaaaaaa-----------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3664238 36 +  4147112 I
e caeJap4.Scaffold18194   528944 291 +   823664 I

a score=21358.000000
s ce10.chrX              5383497  95 + 17718866 GAGCATGTGCA----TGTGTCATA---TGTTTTTAATCCGT--AGTTGGTATTAAACAAAAATCTTCCCTTGGC--CC----GCGTTGTCTCTGTCTCTGTTTAG--ATAAA
s cb4.chrX              10736323  81 + 21540570 --------AAA----TGTGTCACATGGTGTTTTTAATCCATAGACGTGATATTAAATAAAACATCTCCCCAACAC-CA----AGAGTTCGTCT--------------ATCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149202  91 -  4500979 ----------G----TGTGTCACATGATGTTTTTAATCCTT--GCCTGgtattaaacaaaaaattcttatgGCTCGCA----GGGGGTTGTCTATAGCTGTTTTA-GATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      6123 102 -  1189296 ----aagtgtacGTGTGTGTCATATGATGTTTTTAATCCTT--GGCTGgtattaaacaaaaaaatcttgtGGGG--CACCAGAGGAGTTGTCTAATGCTATTTAG--ATAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3664274  99 +  4147112 TAAAAAGTGTA----TGTGTCATATGATGTTTTTAATCCTT--GCCTGgtattaaac-aaaaaatcttatGCCA--CA----AGGAGTTGTCTATTGCTGTTTAGAAAGAAA
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold18194   528944 291 +   823664 I

a score=31030.000000
s ce10.chrX              5383592 232 + 17718866 GATGTACGTAATCGGAGAG----------AGAGTTTTTTTTTATTCC-GC--CGTTTA----CATCCAAGTTGATTTGGTAATTTATGGAATGTCATGTGAG----CAT-----CGGGCAAAAGTCCATGTT-------------------------CCCCTCC-----------------TCCCTCACCACTATCAG------CTCT----CCAAAAAACC-----------------------TG----ACTTATTCATCAATAGTCTTCTAATATTAA--CCGTG--TTTTTTCACGACAAATCTCCGA-TT-----TGATCATCTATTTTCTAGGAAATACC----T
s cb4.chrX              10736404 260 + 21540570 GATGTGCGTAATAGTTGTA----CCAGTTTAAGTTGATTGCCTTTC--GCATCTTTTGG----GACCAAGTTGATTTGGTAATTTATGGTTTGGCATATGAG----G-------------------CATCTTGAGGCagtataaaaaaaagaaaaccactTTCC-----ACTGCCAGCATATTTGGAGTGGTTATCAG------CTCT----CGGTGGAGCCA-----------------TCCGGTG--TTATTTATTCATCATCAGTTCTGGAATATTTG--ACGCG--TTTTT------C-TAGCCACGA-TTC----TTATCAAC--AC------GAAGTACTTAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149293 267 -  4500979 GATGTACGTAATCGGAGTG----CCAGAGTGAGTTGATTGTCTTTT--GC--CTTTTGGACTCGTCCGAGTTGATTTGGTAATTTATGGAATGTCATGTGAG----TG-------TCGAAAAAGTCCATGTTGAGCCAGCCT--------------CCCTCTCTGGGAAACCGCCGGT---TTTGCAATAGTTATCAG------CTTT----CCATGAAGATAT----------------TTCTATGATTTATTCATTTATCATC--TTCT----TATTTGCAACGTG--TTTTTA-ACGGC-TACCCACGA-TT-----TTATCAAT--ATTACTGGGAAGTACC----T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      6225 268 -  1189296 GATGTACGTATCCAGAGTGCGGACTTCAAAGCGTTGATTGCCTTTTT-GC--ATT-------TAGCCGAGTTGATTTGGTAATTTATGGAATGTCATGTGAG----AGC-----ATCGAAAAGGT-CGTGTTAAgacactct---------------tttttct--------acaaatg--TTTGCAATGGTTATCagatatttctctttctcgaTAAAGCTAT----------------TTAAGTA----AATTATTAATGATAACTTCTCTAATATTCA--ACGTG--TTTTTT-ACGAC-AACCTTGGT-TT-----TGATCAAC--ATTTCTGGGAAGTACC----T
i caeSp111.Scaffold626  C 0 I 247
s caePb3.Scfld02_0       3664373 269 +  4147112 GATGTACGTAATCGGAGTG-GTGCCACATCGAGTTGATTGCCTTCTTGGC--ATCGTAGTTGTAGTCAAGTTGATTTGGTAATTTATGGAATGTCATGTGAGCACCCAC-----ACCAAGAAAGT-CCAACCACCCGCGTCT---------------TCATTCT-----GTAGCAAGCGT-TTTGCAATGGTTATCAG------CTCT-----------GCCAT----------------TTCGATG----ACTTATTCAACATTAGTTCTCAAATATTCA--ACGTGtttttttt-ATCAC-TACCCAACTATT-----TCATCAAC--ATTCCTGGGAAGTACC----T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   529235 259 +   823664 GATGTGAACAATCGTGGAC----------ACACTTGATTGGCTTTT--TT--CTGGAG----TCACCGAGTTGATTTGGTAATTTA-----TGTCATGTCGG----TACCAACGATCGAAGAAGA-C------------------------------TCCCTCT----GGAAAAGAGCGC-ATTGCAAATGTTATCAG------CTCA----CTATGAAACCACTATGTCCCGCATCCAGTTTCATG----TTTTATTCACCTAAAAGCATCGAATATTAA--ACGTG--TTTTTT-ACGAC---TCCTCGA-TTTGGTATAATCAAC--AATTCTGAAGCTTACC----A
i caeJap4.Scaffold18194 I 291 C 0

a score=1074.000000
s ce10.chrX              5383824 3 + 17718866 CCT
s cb4.chrX              10736664 3 + 21540570 TAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149560 3 -  4500979 TCT
i caeRem4.Crem_Contig0  C 0 I 240
s caePb3.Scfld02_0       3664642 3 +  4147112 TTT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   529494 3 +   823664 TCT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626      6493 247 -  1189296 I

a score=816.000000
s ce10.chrX              5383827 5 + 17718866 TTTCC
s cb4.chrX              10736667 5 + 21540570 TTTAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3664647 5 +  4147112 GTTAC
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   529497 5 +   823664 TTTTC
i caeJap4.Scaffold18194 C 0 I 1529
e caeSp111.Scaffold626      6493 247 -  1189296 I
e caeRem4.Crem_Contig0   2149563 240 -  4500979 I

a score=234.000000
s ce10.chrX              5383832 11 + 17718866 CAA--ATTTCAAT
s cb4.chrX              10736672  8 + 21540570 TGA-----TTAAT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3664652 13 +  4147112 CAAGGATTTTAAT
i caePb3.Scfld02_0      C 0 I 1275
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e caeSp111.Scaffold626      6493 247 -  1189296 I
e caeRem4.Crem_Contig0   2149563 240 -  4500979 I

a score=-515.000000
s ce10.chrX              5383843 363 + 17718866 AAACATTATCGCACCaaatttttcaaaaaaataattagt----ttt----------------catatacatataataaaatagaaa-----attattaCGCATCTATTAAAAAATCTATTAAATCAT----AAACTTTGATTGTTAAGCAATTCTGAGTAAAT----TAAAACTGAAATTTGAAAGATTTTTATTCAATTTCA---GTAAATGTAAATGATGTTTTGATTTTTTCGAGAACTTTTCATATCTGTAAACAATCAATAAAAATGTAGTGAATAAATTTTTGAATGAAATTATATCTTCTTTCAAAACGTGCACTTTTTCCtttaattaaataatattatttt-tCAATTACCAT-----------------TAAAGTGCAAAGTTT-------TTATTTTGAGTCAAAGTTTTGTT
s cb4.chrX              10736680 371 + 21540570 Gagaatga------caaatttttagtagaactcttttgtgatatttttaaCTAGAAATGGAACATGTACATATAGTAACGCCTAAATAACGGTTCCTATTTTTCGTGTaacgtttctgaaaaatcgttcTAAAAGTTTGATATTCGACTTCATCTGCAAAACCCGTgcagttctgaaaatcggaaa--tccaGTTCAATTTCATCTGAATATCCAAATAG-----TCGTCGTTTCAAGCATTTATCAAACCGG--------------ATATCCGctgaacgatttttt------------------tttcaaa--------tttctcagcATATCGAAAAAGGTCATTTCGTCGATCACGATTGCATTGAAAATAAAGATAAACTGGAGAGTTTCGTACGGTTTTTTCAATATGAAGTTTTATT
i cb4.chrX              C 0 I 245
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e caeSp111.Scaffold626      6493 247 -  1189296 I
e caeRem4.Crem_Contig0   2149563 240 -  4500979 I

a score=0.000000
s ce10.chrX              5384206 232 + 17718866 AAATGCCAAATTTTCAAAAAGTATGGACTTTTGAGACGTTTTTAGGCGTATTTGAAGGTTCAAATCCATAACTGGttaaaaatagaaataaataacaaatgattaaaaaatttgataataacattttaaaaaaCATGATCAATTATCACTTATATTTTTTCTACTATGTTAACTTTTTTTGGATTTATAATATAATTGTTAAAGTTTCAGAAATTTCGGAACATTTTGTTGA
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e cb4.chrX              10737051 245 + 21540570 I
e caeSp111.Scaffold626      6493 247 -  1189296 I
e caeRem4.Crem_Contig0   2149563 240 -  4500979 I

a score=568.000000
s ce10.chrX              5384438 282 + 17718866 AAAAGAAAAAAAGGAAAAATATAATTTTTTAAGAGTTTTTACATCAGATAAACTGACTGAAACCTTATCCaaaaaaaattattttattttaaaCGTTTTGCTCATTTTTACAAGCCTAAAATTATTTTAACACTAGATT--TCTATTCTTGTACATGAGGTACAGC-ATACTAATTTTGT------GATGT----TGTGTTTTATTTC-------------------AGTCAAACATACTGGGTTAAATTCTTTGCCTTCCTAG-----TACCCCCTTAAAAACAAATTCAAATTTGTTAC-------CCAGTATTCCAAATTTTA
s cb4.chrX              10737296 309 + 21540570 aaaaaaaaaccattaatAATACTatattttgcaaattttaaaccgagataaattggctaaaCGTTGATGGTATGAAGACCCTTCCATT----ACATTT------TTATTGCAAACT---ACCTCATTTAATAC-ACATTGGtcta-tcttttaca-aaaatacatCGATTCAAACTTCGCCAACAGGAAATTACCTGAATTTAATTTCCGagtcattttcattttgaaaccggATAT-CCGTTTTacgattttcactttttcaggtTTCCGCCCATTCAGAAGTTCCTATAAATTTTCTACTGTACATCCGGGATTCTCATTCTTG
i cb4.chrX              I 245 C 0
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e caeSp111.Scaffold626      6493 247 -  1189296 I
e caeRem4.Crem_Contig0   2149563 240 -  4500979 I

a score=-16.000000
s ce10.chrX              5384720 16 + 17718866 TTTTAATTC-----------CAGAAAC
s cb4.chrX              10737605 23 + 21540570 ----AACTCATCCACCAAAACGGAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2149803 16 -  4500979 tttgaattt-----------ctgaact
i caeRem4.Crem_Contig0  I 240 C 0
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e caeSp111.Scaffold626      6493 247 -  1189296 I

a score=53985.000000
s ce10.chrX              5384736 471 + 17718866  
s cb4.chrX              10737628 435 + 21540570  
i cb4.chrX              C 0 I 402
s caeRem4.Crem_Contig0   2149819 451 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626      6740 444 -  1189296  
i caeSp111.Scaffold626  I 247 C 0
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I

a score=3989.000000
s ce10.chrX              5385207 35 + 17718866 ACTCAAAA--CTTATTCATTCGATT-TTACTTAGTTCA
s caeRem4.Crem_Contig0   2150272 36 -  4500979 ACCTACCA--TTTGTTGACTCGGTTCCTACCTAGTTCC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626      7184 38 -  1189296 ACTTACCATTTTTGTTGACTCGGTTCCCATCTAGTtca
i caeSp111.Scaffold626  C 0 I 359
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e cb4.chrX              10738063 402 + 21540570 I

a score=144.000000
s ce10.chrX              5385242 51 + 17718866 ACAAGTTCACCTATCGGATTACTAAACTTTTTATGTAATTTTTCGATAATT
s caeRem4.Crem_Contig0   2150308 32 -  4500979 AT-------------------CTGAAGGCtccattttgtttttcaatagtT
i caeRem4.Crem_Contig0  C 0 I 303
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e cb4.chrX              10738063 402 + 21540570 I
e caeSp111.Scaffold626      7222 359 -  1189296 I

a score=0.000000
s ce10.chrX              5385293 800 + 17718866  
e caePb3.Scfld02_0       3664665 1275 +  4147112 I
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e cb4.chrX              10738063 402 + 21540570 I
e caeSp111.Scaffold626      7222 359 -  1189296 I
e caeRem4.Crem_Contig0   2150340 303 -  4500979 I

a score=320.000000
s ce10.chrX              5386093 27 + 17718866 TTTAAATATACATTTTTTGTTTGTTTG
s caePb3.Scfld02_0       3665940 27 +  4147112 tttgaagattcattAGGGACACGTTTT
i caePb3.Scfld02_0      I 1275 C 0
e caeJap4.Scaffold18194   529502 1529 +   823664 I
e cb4.chrX              10738063 402 + 21540570 I
e caeSp111.Scaffold626      7222 359 -  1189296 I
e caeRem4.Crem_Contig0   2150340 303 -  4500979 I

a score=311.000000
s ce10.chrX              5386120 22 + 17718866 TTTTTTTTTCTTATTGATGGAA
s caePb3.Scfld02_0       3665967 22 +  4147112 TACGTTTTTCACACTGTTTCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   531031 20 +   823664 TTGTTCTTTCTTATTTGTTG--
i caeJap4.Scaffold18194 I 1529 C 0
e cb4.chrX              10738063 402 + 21540570 I
e caeSp111.Scaffold626      7222 359 -  1189296 I
e caeRem4.Crem_Contig0   2150340 303 -  4500979 I

a score=11.000000
s ce10.chrX              5386142 4 + 17718866 ATTG
s caeSp111.Scaffold626      7581 4 -  1189296 ACTC
i caeSp111.Scaffold626  I 359 C 0
s caePb3.Scfld02_0       3665989 4 +  4147112 ACCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   531051 2 +   823664 --TG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10738063 402 + 21540570 I
e caeRem4.Crem_Contig0   2150340 303 -  4500979 I

a score=-167.000000
s ce10.chrX              5386146 10 + 17718866 TTCCAACTTG
s caeRem4.Crem_Contig0   2150643 10 -  4500979 TTATAACTCG
i caeRem4.Crem_Contig0  I 303 C 0
s caeSp111.Scaffold626      7585  5 -  1189296 -TCTTA----
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3665993  9 +  4147112 -TGtgattcg
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18194   531053 10 +   823664 TTCCATCTTG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10738063 402 + 21540570 I

a score=283881.000000
s ce10.chrX              5386156 814 + 17718866  
s cb4.chrX              10738465 803 + 21540570  
i cb4.chrX              I 402 C 0
s caeRem4.Crem_Contig0   2150653 774 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      7595 757 -  1189296  
i caeSp111.Scaffold626  I 5 I 57
s caePb3.Scfld02_0       3666022 763 +  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18194   531063 746 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-930.000000
s ce10.chrX              5386970 2 + 17718866 GT-
s cb4.chrX              10739268 1 + 21540570 -T-
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2151427 1 -  4500979 -t-
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3666785 1 +  4147112 -T-
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   531809 2 +   823664 -TT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626      8352 57 -  1189296 I

a score=91.000000
s ce10.chrX              5386972 1 + 17718866 T
s caeJap4.Scaffold18194   531811 1 +   823664 T
i caeJap4.Scaffold18194 C 0 I 69
e caePb3.Scfld02_0       3666786 1 +  4147112 I
e cb4.chrX              10739269 2 + 21540570 I
e caeSp111.Scaffold626      8352 57 -  1189296 I
e caeRem4.Crem_Contig0   2151428 1 -  4500979 I

a score=-23000.000000
s ce10.chrX              5386973 497 + 17718866  
s cb4.chrX              10739271 323 + 21540570  
i cb4.chrX              I 2 I 1
s caePb3.Scfld02_0       3666787 396 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194   531812  69 +   823664 I
e caeSp111.Scaffold626      8352  57 -  1189296 I
e caeRem4.Crem_Contig0   2151428   1 -  4500979 I

a score=-10577.000000
s ce10.chrX              5387470 82 + 17718866 ---TACCACAATTTTCT-ATTTCATCAACTTTTTTGTAACTCTCCAAAAATAATTTCGTACTAAAATAGAATTTATAACCAAAATT-
s cb4.chrX              10739595 33 + 21540570 ---AACACagattttactaaaaaatcaaat----------------------------------------------aaacaa-----
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2151429 65 -  4500979 ---tactCGAATTTTAC-ATAtggtcaaattttttcg--------aactg--------TGTTAAA--AGCAATacaaaacaagattt
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3667183 65 +  4147112 TTCCagtcgatttt----------tcaattctttttg---tctCCAAATGTAA-----TGTTTGG--ACCCTTATCAATCAAATT--
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194   531812 69 +   823664 I
e caeSp111.Scaffold626      8352 57 -  1189296 I

a score=-1961.000000
s ce10.chrX              5387552 29 + 17718866 TCACAGATGCCAGATC-GATCTAATATAAT
s cb4.chrX              10739628 10 + 21540570 --ACA----CCCGATT--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2151494 24 -  4500979 ttaca----ctaaaattgttttcgtata--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3667248 27 +  4147112 I
e caeJap4.Scaffold18194   531812 69 +   823664 I
e caeSp111.Scaffold626      8352 57 -  1189296 I

a score=0.000000
s ce10.chrX              5387581 9 + 17718866 TTCCAAAAG
e caePb3.Scfld02_0       3667248 27 +  4147112 I
e caeJap4.Scaffold18194   531812 69 +   823664 I
e cb4.chrX              10739638 0 + 21540570 C
e caeSp111.Scaffold626      8352 57 -  1189296 I
e caeRem4.Crem_Contig0   2151518 0 -  4500979 C

a score=-27091.000000
s ce10.chrX              5387590 157 + 17718866 TCTAAAAAAT----------GAAGTAATAATCTTTGATTATTGAATTTTTTCCCCGCGTT--------TTTTCCCGTTGAATAAATCATATTA------------GTC-------AACGTTGTCTTTTGCTCATTCTGTTGTTAATCATTTTTACACAGAAA---------TTAACTTTTACGCAGAATGGTGAATTATTCTG----
s cb4.chrX              10739638 134 + 21540570 ---------C----------CAGGAAT----TTTTAGTGCTATAATTCTT-----ATCTT--------GTTTTGAACTGATCAAATCAGGAGA------------TAC--ATATGAATGTTGCCTTGTTCT----------TTAATCa---tttctgggaaaaaatttaattttacgcTAACATGAGTAACGT----------TTTG
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   2151518 152 -  4500979 -ctaaaaaat----------caaaaatcc--tttttttttcctaatccAT-----ATGTTTCTTCATAATTGTTTACttattaaatcaaaaaaactaatttatgCAAC--ATAAAAATGTTGCCTTGTTCT----------TTAGTCA--TTTTCTAAGAAA----------TCACGATTACGCAAggaattt----------c---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8409 118 -  1189296 tttacAAAAC----------CAAGAACTGATTTTTGCtac-------------------------------ttcaa---aataaatcaaataa------------tACTGACAAAA-------CTTGCTGT----------TTAATCA--TTTACcaagaaa----------tcatttctacGCGGAAAACTTTATTTCCTTG----
i caeSp111.Scaffold626  I 57 C 0
s caePb3.Scfld02_0       3667275  86 +  4147112 TCTGAGAAATGACCAACCCGCAAGAATCCAATTTTCTTGC---------------ATTTC--------CTTTTC------------CTAATAA------------TGC--ATAAAA-------TGTA--------------TTAatca-------------------------------------gaacaatt--------------
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194   531812  69 +   823664 I

a score=-7034.000000
s ce10.chrX              5387747 56 + 17718866 ATTATTTTGCAGTGCTTT-------AGAATTAATATAT--CAATGTCTCTTTTCAAGGTTTCTTT
s caeRem4.Crem_Contig0   2151670 62 -  4500979 attattttgca---ttttcgcagaaaaaaagagtatttATCAAAATTGCTTGTCATTCtaccaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8527 42 -  1189296 ---------CA----TTTCTcccagaaaatgaatttgt-------tgTCTTTTCATT---gcgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3667361 22 +  4147112 ---------------tttcattcaaaagaaaaa----------------------------cata
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   531812 69 +   823664 I
e cb4.chrX              10739772 53 + 21540570 I

a score=5327.000000
s ce10.chrX              5387803 9 + 17718866 AATTAAATT
s caeRem4.Crem_Contig0   2151732 9 -  4500979 aattaaata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8569 9 -  1189296 aattgaata
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3667383 9 +  4147112 aattgAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   531881 9 +   823664 aataaaatt
i caeJap4.Scaffold18194 I 69 C 0
e cb4.chrX              10739772 53 + 21540570 I

a score=91979.000000
s ce10.chrX              5387812 114 + 17718866 ATTCGTCA------T--TTTCAGCATTGCAAGCAGGTGATACTCTTCATGCAAGGCGATTTCTCAGCGATAAGCGACGGAGTTACCGGAATCGAAGTCTTGTGAGAAC--------GTT----TTC---TTTTTGTA
s cb4.chrX              10739825 124 + 21540570 ATTCGTCACTTTCTT--TTCCAGCACTTCAAACAGCTGATACACTTCATGCAAGGCGATTTCTTAGCGATAAACGTCGGAGTTACAGGAATCGAAGTCTTGTGAGTAC--------TTTACGATTA---TCTTTGCA
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   2151741 132 -  4500979 attcgtca---tttt--tttcagcactTCAAGCAGCTGATACTCTTCATGCAAGGCGATTTCTCAGTGATAAGCGACGGAGTTACAGGAATCGAAGTCTTGTAAGTGCAAACGTATTTtaagattcaattttttgtt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8578 117 -  1189296 attcgTCA------T--ATTTAGCCCTTCAAGAAGCTGATACTCTTCATGCAAGACGATTTCTCAGCGATAAACGAAGAAGTTATCGGAATCGAAGTCTTGTGAGTGC--------ATTCAAATCA----TTCTGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3667392 113 +  4147112 ATTCGTCA------T--GTTTAGCCCTCCAAGCAGCTGATACTCTTCATGCAAGGCGATTTCTCAGCGATAAACGTCGAAGTTACAGGAACCGAAGTCTTGTAAGTAC--------ATT----TTG----ATCTGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   531890 116 +   823664 tgtcATCA------TGATTTCAGCGCTCCAAGCAGCTGATACTCTACACGCGAGGCGATTTCTGAGCGACAAAAGAAGAAGTTACAGGAATCGAAGTTTGGTAAgttt--------tta----ctc---ttttttta
i caeJap4.Scaffold18194 C 0 I 696

a score=-13385.000000
s ce10.chrX              5387926 266 + 17718866 TTAAAATGTGGTTTTTAATAATGTAAGAACCCGAGTGCAAACTA-CTCGAATTT---GAATTCAAATTTTCTCTTTCTGACACCCAAAAATAGGTTACTTACTGC--CATTTTGTTTTTG--CATGTGACCG---ACAAAATGG---ACTACA-AA------CGTTTT-----TTCATGATGTCAAAACAAAACGC------AG---------------CGA-AAATAGAAA----------TGCAATTTGAGAAAAATGGGCGTGGC-----AATAAAAATATAGACTTCTGATGTATGAGCCA-ATTTTG------AGGATAAATAGTTTAGGC
s cb4.chrX              10739949 266 + 21540570 AACT----------------------ACAATTGAGTGCATTCGagttgaaaatc-caaatttcgagaGTTGAGC---AAGAACCTAAAAATAG-----CGACTGA--CGCTTTGTTTTTCTGTCCATAAAAAC--ACAAAGTGGACGACGACA-AAAACGTCTGtttttttAATGGATGATGTCGAAATGGAGTGG------GTGAACGTG--------CCG-TAATGGCAAAAATAGATTCTGTAATTATAGCGAAAAAGGTGTGGCT---AGACGAGAA---AGAGGTTtggctttttc-ttt-ttcgtgtATGACAGACTC------C-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2151873 259 -  4500979 gacgATTATAA-------------AAACGATTGACCACTTCCGC-ctcaatatt-caaatttcgaaatttgagt------aATCCAAAAATAGAGTGTTGAGTGt--cgctttttgttt---ttcacggaagc--agaaa-------acgaca-aaatgg--CGTTATT----CGGGTGATGTCAAAATAGAGTGA------AGAAATGTG--------ccgaaaataggaaaaataa--tcTGTAGATTT----GAATGGGCGGAGCTGAGAAACCAGAA--CCGACTTCTGGTGTTTTA-CTA-ATTGTG------AGACTAACCAGGT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8695 240 -  1189296 GACGTATGT-----------------AGGATCAAGTACAATTGA-CTCGAAATTGTGAAATTCGAG-------------GAACCTAAAAATAAAGTGTCGAGTGT--CGTTTTGTTATTC---------ATGTGTACAAATTGG---ACGGCATAAG-----CATTTT----ATGGATGATGTCAAAATAGAGGGAATTT--TGGAGCTTAAACAGAGGCAA-AAATAGAA-----------------Tcga---aagggggcgtggc-----agTAGA-----AAAGTTATGATATAAAA-CCAGAGTTCG------AGAATAAATAGTTTAT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3667505 256 +  4147112 TACGTTT---------------------GAGCAAGTACGATTGA-CGTGAAACT-TGAATATCTA--------------gaacctaaaaataaaatgtagGGTGTgccattttgtttttc--caaaaaaatgc-----aatttg---acgaca-aaa-----cgttttg--aaagaaTGATGTCAAAATAGAGGGAATTTGAGGAAATTTGAATA----CCA-AAATagcaaaaccaatttttggagctgaa---aaaggGGTGTGGC----AAACAAG-----CGACTTTTGATGTATAA-CCA-ATTTCG------AGACTAAATAGTTTAAGC
i caePb3.Scfld02_0      C 0 I 1271
e caeJap4.Scaffold18194   532006 696 +   823664 I

a score=-10192.000000
s ce10.chrX              5388192 171 + 17718866 ----------------------TACCCGAGTCTCATAACAACCGAATCAAAAAATTATTCACCTGGAT-AAAAAAATTT--TATCAGT--------AAATCTATACATATTATAAGCTATATAATGCATCGCCACTCGGTTGTTAGC---TCTCCGGTAAAACACGAAATCTTACTTAGAAGTATAT----TTATTTATTCTATTCTCTTA
s cb4.chrX              10740215 192 + 21540570 TAATAATATTTTCTTATATTCTCAActaatttcatcaaaatccaaTGGCAGAAA----GCTCGTAGAGCAAAGATATTTCTTTCTTGTTACTACTAAAATTTA-GTTTCTCCTTTCATACATAATGAATCAAAAATCGTTAGAATGCGCATCTCCggta------------tttctcaaattttcaaatatttatcaataaaact--tttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2152132 152 -  4500979 TAACCATA-----------TCTCAACTAAATTATATTAGCTCTCGAGGTAAAAC----TCGCCTGGAA-AACAAGAGTTCTCTGCCGT--------AAA---------------------GCAATGCATCGAGACTCACTAGTATGCTCGTCTCcggta---------cttttttttaaactttcag----ctttcaataaaaata-attt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      8935 129 -  1189296 -----------------------CACCAAATTCTATTAGGGGCAAGCAAAAAAC----TAGCTCA----AACAACGTTTCcagtctg---------aaa-----------------------aatgaatcgcGAGCATAGGGTCTGC---TCTCCggta------------tttcttattttttcaa----caacCAATATTCTTATAATT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3667761 1271 +  4147112 I
e caeJap4.Scaffold18194   532006 696 +   823664 I

a score=47561.000000
s ce10.chrX              5388363 69 + 17718866 TTTAGGGTCCAACAATTGCATCTGCTCCGTCTGTGGAGCAAGAAGACTACCGAACACCCAGGCCTTCAT
s cb4.chrX              10740407 69 + 21540570 tttagggTCCCACAATTGCATCGGCTCCATCTGTGGAGCAGGAGGATTATCGAACACCGCGACCTTCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2152284 69 -  4500979 tccaggGACCCACAATTGCATCCGCTCCATCAGTGGAACAAGAAGACTACCGAACACCTCGACCATCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      9064 69 -  1189296 CTCAGGGTCCGACAATTGCATCTGCTCCATCTGTGGAGCAAGAGGACTATCGGACACCTCGACCATCGT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   532702 69 +   823664 TTCAGGGCCCAACGATTGCGTCAGCTCCTTCTGTGGAACAAGAAGACTACCGAACACCTCGACCATCTT
i caeJap4.Scaffold18194 I 696 C 0
e caePb3.Scfld02_0       3667761 1271 +  4147112 I

a score=79751.000000
s ce10.chrX              5388432 179 + 17718866 TTGATAGCAACGGTTATGTCGGAAAGAGTTTTGACTTTAGCAGTGC---------ACAACA---TGGGCTTACTGCAAGTGAATCAAATGCTCTCGTGAAGGTACA-------CTTTTTTTT----------GGTTGTTCGATTTGGTTGTTGAAACATGATA--------------GTCTGAGTTAT--AA-----AGTTTTCAATTT-CCGGTT-AGATAATTGAG---AAT
s cb4.chrX              10740476 181 + 21540570 TTGATAGCAATGGATACgctggaaaaagttttgactTTAGCAGCGC---------CCACGC---AGGACTCACAACCAGCGACTCGAACCCGCTTGTTAAGGTAAAaagttttgtgtttttt--------------attttactAGGT------AACTCGATAC-------------GACGAAGATGTGCAA-----TGTTCTCGATTTCCCGTTCAAAACGGTCGGA---Agt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2152353 190 -  4500979 TTGATAGCAATGGATATGCTGGAAAAAGTTTCGATTTCAGCAGTGCCTATGGACACCATGG---AGCATTTGGAGCAAGTGAATCTAATGGACTTGTTAAGGTAcaaa------cgttttgt--------------ttttcact-ggT------AACCTAATAT----CTTGAGTTAGAGAACTATGTGCGA-----AGTTCTCAATTT-CCGTTC-AAATATTTGGA---AGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      9133 167 -  1189296 TTGACAGCAATGGATACGCAGGAAAGAGTTTCGATTTTAGCAGTGC---------TCATCA---TGGACTCACTGCCAGTGAATCGAATGCTTTAGTCAAGGTATAAA-----ACGTTTTTT-------------------ACT-GGT------AACTTGATA--------------Gctagaaatagaaaa-----agttctcaattt-tcgttc-aaacatttgga---aat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3669032 187 +  4147112 TTAGCAGCAATGGATATGCAGGAAAGAGTTTCGACTTCAGCAGTGG---------TCATGG---TGGACTTACGGCCAGTGAATCCAACGCTCTAGTCAAGgtataaa-----gtttttttttttggttttccatgTTTCAACA-GGT------AACTTGATA--------------GCTAGAAGTTTgcaa-------ttctcaattt-ccgttc-aaatatttggaaacaat
i caePb3.Scfld02_0      I 1271 C 0
s caeJap4.Scaffold18194   532771 192 +   823664 TCGACAACGGTGGCTATGCGGGAAAGAGTTTCGATTTTAGCAACGG---------CCACAGCCTCGGCTTTACTGCCAGCGAATCCAATGGGCTTGTGAAGGtacaaa-------gttttgt--------------ttttcaat-ggA------AACTTGATCTTGTGTTTGTATTTTGTGGTGATGTGCTGTGCTTAGTTCTCAATTT-CCGTTC-GAATACGTGGA---AAT
i caeJap4.Scaffold18194 C 0 I 248

a score=-6247.000000
s ce10.chrX              5388611 13 + 17718866 GAAAATAAA--------------------------AATG
s cb4.chrX              10740657 32 + 21540570 aaaaaaaac---cgaaagtACTCTCAAAAGGATTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2152543  9 -  4500979 AAAATTGAC------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626      9300 12 -  1189296 gaattgaaaatg---------------------------
i caeSp111.Scaffold626  C 0 I 110
s caePb3.Scfld02_0       3669219  9 +  4147112 gaaatgaaa------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   532963 248 +   823664 I

a score=-494.000000
s ce10.chrX              5388624 12 + 17718866 GATAGTGCACTT--
s cb4.chrX              10740689 12 + 21540570 GTT--TACAACTTT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3669228  7 +  4147112 -----tgcactt--
i caePb3.Scfld02_0      C 0 I 48
e caeJap4.Scaffold18194   532963 248 +   823664 I
e caeSp111.Scaffold626      9312 110 -  1189296 I
e caeRem4.Crem_Contig0   2152552  0 -  4500979 C

a score=-685.000000
s ce10.chrX              5388636 32 + 17718866 TATGAACAT----TTGAGTTTGTTTC--ATTTTTTTGG
s cb4.chrX              10740701 35 + 21540570 CATGCagaactttttggttttttttt--gttctttgg-
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   2152552 22 -  4500979 -------------TTGACTTTGTTTTACATGCATT---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3669235 48 +  4147112 I
e caeJap4.Scaffold18194   532963 248 +   823664 I
e caeSp111.Scaffold626      9312 110 -  1189296 I

a score=-5840.000000
s ce10.chrX              5388668 664 + 17718866  
s caeRem4.Crem_Contig0   2152574 362 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3669235  48 +  4147112 I
e caeJap4.Scaffold18194   532963 248 +   823664 I
e cb4.chrX              10740736  33 + 21540570 I
e caeSp111.Scaffold626      9312 110 -  1189296 I

a score=0.000000
s ce10.chrX              5389332 14 + 17718866 AAATTCATATCTCG
e caePb3.Scfld02_0       3669235 48 +  4147112 I
e caeJap4.Scaffold18194   532963 248 +   823664 I
e cb4.chrX              10740736 33 + 21540570 I
e caeSp111.Scaffold626      9312 110 -  1189296 I
e caeRem4.Crem_Contig0   2152936  0 -  4500979 C

a score=91.000000
s ce10.chrX              5389346 1 + 17718866 T
s caeJap4.Scaffold18194   533211 1 +   823664 T
i caeJap4.Scaffold18194 I 248 C 0
e caePb3.Scfld02_0       3669235 48 +  4147112 I
e cb4.chrX              10740736 33 + 21540570 I
e caeSp111.Scaffold626      9312 110 -  1189296 I
e caeRem4.Crem_Contig0   2152936 0 -  4500979 C

a score=546.000000
s ce10.chrX              5389347 1 + 17718866 T
s cb4.chrX              10740769 1 + 21540570 T
i cb4.chrX              I 33 C 0
s caeSp111.Scaffold626      9422 1 -  1189296 t
i caeSp111.Scaffold626  I 110 C 0
s caeJap4.Scaffold18194   533212 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3669235 48 +  4147112 I
e caeRem4.Crem_Contig0   2152936 0 -  4500979 C

a score=119188.000000
s ce10.chrX              5389348 366 + 17718866 TTGCAGGTGTCAGCTGACTTTCTTAGGTTAAACGGAAGCCGTCAACAGTTCAAAAACCTTCTATCAGCTCGAAAAAAGCTGGGATCCCTTCCGCCTGCTTACACAAGAATTGACTATAGCAGGGAGTCGTTGGACTCGCATTCTGGTGAGT-----------GATGGGGTTGGGGACGA-----AAAAAGGGGGCATTGTACTTACGAG-TCGCTAGTACGGTAG---CA-ACAAAATCCTAATACAGCTACAA--TCATAAGGA------GGTATAAAATACGTTTGACTATACACTTCAAAACACTCATTTCTTCAAATGCTCCTTATTCTGTAGTAAT------------------------GTTAGTTCATCAAAGTTCGTTTGACGATGATAATGATCTAGACTGCTGTAAGTT--
s cb4.chrX              10740770 363 + 21540570 TTCCAGGTATCTGCTGATTTCCTACGGCTAAACGGAAGTCGTCAGCAGTTCAAAAATCTGCTGTCTGCGCGGAAAAAATTGGGCTCCCTTCCGCCTGCGTACACGAGAATTGACTTCAGTCGAGAGTCACTGGATTCACACTCTGGTGAGT--------TTGGGAAGGAATGCAACTACAATATATGGGGATGTGTTTATAAGGAAAAG-----TGAGATGGT----ACGGATGATATAGAT----------------ACAAATTTTTGGAGGTATAAAATATGTAGAGGTCTAGACACGATAT------TTTA------TACAAATCATTTCTCAAAGAGATCGCTAGAAAAGTAAAT--CTAtgttaatttttggaaattcctgtGAGGATGAT---------CAATACAGTAAGTT--
i cb4.chrX              C 0 I 509
s caeRem4.Crem_Contig0   2152936 349 -  4500979 ---CAGGTTTCTGCTGATTTTCTCCGGTTAAACGGAAGTCgacaacaattcaaaaatcttctttctGCTCGGAAAAAGCTGGGTTCTCTTCCGCCTGCGTACACTAGGATCGACTATAGTCGGGAGTCATTGGATTCACACTCCGGTGAGT---AGTAGTCAGGTGGAGATGAGACAAA-----ATAGGGATGTAATTGTACTTACAAG-CACTTGATACGGTAGTAACAAATGAGAAATATGTACGACCACA-----ATAAAGATTT---GGTATAAAATATGGTCAGCTGTACATATagaat------tcta-------------cttttttgaatgag----------------------atGCTAGGTTATCAAAATTCGGTTGAGGAagat---------gaaaatattgaatg--
i caeRem4.Crem_Contig0  C 0 I 63
s caeSp111.Scaffold626      9423 379 -  1189296 --tcaggtGTCTGCTGATTTCCTTCGGTTAAACGGAAGTCGTCAacagttcaaaaatcttctttctGCTCGaaaaaaaCTGGGCTCCCTTCCGCCTGCCTACACGAGGATCGACTATAGTCGAGAGTCATTGGATTCACACTCCGGTGAGTAGTAGTAGTCAGGCGGAGATGCGACAAA-----AAAGATGAG-CATTGTACTTATAAGATAGTGGATACTGTAG---CA-ATGAACAAGCGATACAACTACAA---CCTGAAAG------AATATAAAACATGGTCAGAtgtccat-------------tttcttttctttttccttgatTTTAAGTGAT---actagaaaactttttgaaaatgctaGTCCAtcaaaattcttttgatGACGAT---GACCAAGAtaattgtgagtt--
i caeSp111.Scaffold626  C 0 I 31
s caePb3.Scfld02_0       3669283 377 +  4147112 TTCCAGGTGTCCGCTGATTTTCTCAGGTTGAACGGCAGTCGTcaacagttcaaaaatcttctttctGCTCGAAAAAAGTTGGGTTCCCTTCCGCCTGCTTACACGAGGATCGACTATAGTCGAGAGTCATTGGATTCACACTCTGGTGAGTAGTAGTAGTCAGGTGGGataaagacaaa-----aaagatggGTTATTGTACTTATAAG-TGCCTAATACGGTAG--ACATATGAAGAAGTGATACAACTACAA----ATGAAAGCGA-GCGgtataaaacatga--aaatgttcACTTATCATTCCTCATTTCTCGCcttatttcttattttgaagCTAG---AC---------------ACATGTTGATTCCTCGAATTTCTATCCAAGATATC---------GATGAGTGTGAGTT--
i caePb3.Scfld02_0      I 48 I 59
s caeJap4.Scaffold18194   533213 266 +   823664 TTACAGGTGTCTGCTGATTTCCTCCGATTAAATGGAAGCCGGCAACAATTTAGAAATCTGCTCTCTGCAAGGAAAAAACTGGGATCATTACCTCCAGCGTACACACGGATTGATTATAGTCGGGAGTCTCTAGATTCACATTCCGGTAGGT---------------------------------ATTCGGATATTACGGTACGAGAAAG------------GTTG---CAAGaaagacagacaaacaacaaaaaattcacaaaaa---------atagcacacgt-------------------------cttc---------------------aaaaaa------------------------------------aaattcc-------acaaa---------aacgGTATtaacttcc
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5389714 59 + 17718866 AAATTTACGTATGACAATAAAGCGCAATTGATGTATACGTAGTTCAACCGCGTAAAATG
e caePb3.Scfld02_0       3669660 59 +  4147112 I
e caeJap4.Scaffold18194   533479  0 +   823664 C
e cb4.chrX              10741133 509 + 21540570 I
e caeSp111.Scaffold626      9802 31 -  1189296 I
e caeRem4.Crem_Contig0   2153285 63 -  4500979 I

a score=19344.000000
s ce10.chrX              5389773 531 + 17718866  
s cb4.chrX              10741642 384 + 21540570  
i cb4.chrX              I 509 C 0
s caeRem4.Crem_Contig0   2153348 347 -  4500979  
i caeRem4.Crem_Contig0  I 63 C 0
s caeSp111.Scaffold626      9833 305 -  1189296  
i caeSp111.Scaffold626  I 31 C 0
s caePb3.Scfld02_0       3669719 446 +  4147112  
i caePb3.Scfld02_0      I 59 C 0
s caeJap4.Scaffold18194   533479 376 +   823664  
i caeJap4.Scaffold18194 C 0 I 16

a score=3820.000000
s ce10.chrX              5390304 4 + 17718866 TGAG
s cb4.chrX              10742026 4 + 21540570 TGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2153695 4 -  4500979 TGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10138 4 -  1189296 TGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670165 4 +  4147112 TGAG
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold18194   533855 16 +   823664 I

a score=-4046.000000
s ce10.chrX              5390308  9 + 17718866 CACCATGTG------
s cb4.chrX              10742030 10 + 21540570 ---GAT-CGAGA-TG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2153699 12 -  4500979 ---GGTGtgagattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10142 11 -  1189296 -GGGGTGAGAGA---
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3670169 10 +  4147112 I
e caeJap4.Scaffold18194   533855 16 +   823664 I

a score=12666.000000
s ce10.chrX              5390317 14 + 17718866 TCTGCAAATGAGAT
s cb4.chrX              10742040 14 + 21540570 TCTGCAAATGAGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2153711 14 -  4500979 tttgcaaatgagAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10153 14 -  1189296 TCTGCAAATGAGAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670179 14 +  4147112 TCTGCAAATgagat
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18194   533855 16 +   823664 I

a score=-7679.000000
s ce10.chrX              5390331 39 + 17718866 GGGAGTCTT---AAAGGAATC---------------------------TCGTT----CAATGTTACTATTTTG
s cb4.chrX              10742054 66 + 21540570 ----TTCTT---AAAACATTCGCCTTTGCTTCGTTGATGTCTGTTCTACTATACACACAATGACTCCATTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2153725 30 -  4500979 ----TTCTT---------------------------------------TCACATGTGTAATGtttccattttg
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold626     10167 44 -  1189296 ----TTCCT---CACACaatcctttttctcg-----------------ttGTA-----AATTATTCTGTTCTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670193 52 +  4147112 ----ttcttgaaaacagaattcctcttcttttattc------------ttgTA-----AATGATTCCATTTTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   533871 52 +   823664 GGAAGTCGTCAAGACACACCGCTTCACACTT-----------------TCGCT----CACAGTACCGATCATG
i caeJap4.Scaffold18194 I 16 C 0

a score=-7260.000000
s ce10.chrX              5390370 28 + 17718866 A-AATTCT------AGTTTGATGGTC-----------CTTCACACA--
s cb4.chrX              10742120 44 + 21540570 ACCCTCTTCTCGTGATTTTGATGGTCCCTTCTTTTGATCTCCCA----
i cb4.chrX              C 0 I 11
s caeSp111.Scaffold626     10211 39 -  1189296 A-CATTTC------GGTTTGATGGTAGAAAAATTTGGCTTCTCAGc--
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3670245 39 +  4147112 ATTCTTTT------GGTTTGATGGTC-CCCATTTTCGCTTCTTTTA--
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   533923 24 +   823664 --------------AACCTGCAAGTG----------ACTTTTTAACGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2153755 41 -  4500979 I

a score=1369.000000
s ce10.chrX              5390398 47 + 17718866 GTTA----CTAA------AATTTTACGGAAATTTTGGAAAATTCTGAAAAA--------CTATTT
s cb4.chrX              10742175 53 + 21540570 TTCG----CGAA--------TTTTTATTAAACTCTGGAATTCACTCAAAAGTGCAAGCACAATTT
i cb4.chrX              I 11 I 42
s caeRem4.Crem_Contig0   2153796 55 -  4500979 TTCA----CTAA------AGTATTGgtaaaattttggagattCATCAGAAGTGCAAACTCAGTCA
i caeRem4.Crem_Contig0  I 41 I 3
s caeSp111.Scaffold626     10253 59 -  1189296 tttgttttctaa------aactaTATTGAAACTGTggcagtttttgaaaaattcaagctCAACCA
i caeSp111.Scaffold626  I 3 I 3
s caePb3.Scfld02_0       3670290 57 +  4147112 TTTG--CTATAA------ATTTCTGATTAAACTCTGGCGAGTTCTTAAAAGTGCAAACTCAATCA
i caePb3.Scfld02_0      I 6 I 3
s caeJap4.Scaffold18194   533947 44 +   823664 --------GTAAGACGTTGATGTTAGTGGGCTGTAGGGAAATAATAGAAAAT-------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-2978.000000
s ce10.chrX              5390445 26 + 17718866 ACTGGTGTCAACTGCGC---------------ATCATGATA
s caeRem4.Crem_Contig0   2153854 36 -  4500979 -----TCTCAAGTACATTACTCAAGGACTCTGATCATGAAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     10315 36 -  1189296 -----CGTCCGATACGTTTTGTGTGGAATATGATCACGATT
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3670350 36 +  4147112 -----AGTCCAATTCATTTTGTGAGGATTCTGACCATGATC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   533991  9 +   823664 -----------------------------ATAATTATA---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10742228 42 + 21540570 I

a score=8788.000000
s ce10.chrX              5390471 13 + 17718866 CAGCAGGTGACAA
s cb4.chrX              10742270 13 + 21540570 CAACAGGTTACAa
i cb4.chrX              I 42 I 126
s caeRem4.Crem_Contig0   2153890 13 -  4500979 CATCAGGTGATGA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626     10351 13 -  1189296 CATCAGGTGATGA
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       3670386 13 +  4147112 TATCAGGTGATGA
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   534000 13 +   823664 CAACGACTAAGAA
i caeJap4.Scaffold18194 C 0 C 0

a score=490.000000
s ce10.chrX              5390484 18 + 17718866 TATTCATTGTTAACATAT
s caeRem4.Crem_Contig0   2153907 18 -  4500979 TATTCATTGCTATCATCT
i caeRem4.Crem_Contig0  I 4 I 51
s caeSp111.Scaffold626     10374 18 -  1189296 GTTTTATTACTATTATTA
i caeSp111.Scaffold626  I 10 C 0
s caePb3.Scfld02_0       3670409 18 +  4147112 TCTTCATTACTATTATAC
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194   534013  7 +   823664 ------AAACCAG-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10742283 126 + 21540570 I

a score=-5651.000000
s ce10.chrX              5390502 51 + 17718866 TTTA-TAATAAAGGAAGCAATAATACTTGTTTGT-----TTTGAAATGACCCTTGGG
s caeSp111.Scaffold626     10392 44 -  1189296 ATTATTGATA----GACTGACTAGAATTGTTATTAGTAGTTTGGGTAG---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670427 41 +  4147112 ATTATTCATA--------GAAAAGACTTGTTA-------TTCGGGTAGA-CATTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   534020 20 +   823664 ----TTTATA--------------AGTT-----------TTCGGGATGA--------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10742283 126 + 21540570 I
e caeRem4.Crem_Contig0   2153925 51 -  4500979 I

a score=723.000000
s ce10.chrX              5390553 29 + 17718866 CATTGTGTTATATTAATT-TGCACATTTAT
s caeRem4.Crem_Contig0   2153976 29 -  4500979 CATTGAGAAAATACAATT-TACACTTTTGT
i caeRem4.Crem_Contig0  I 51 I 10
s caeSp111.Scaffold626     10436 17 -  1189296 ------------TCAATT-TGCACTCATGT
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3670468 28 +  4147112 -ACTAATAATACGCAATT-TGCCCTTTAGT
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   534040 27 +   823664 ---TATTCTATGATAATCAAGAACTTTTGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10742283 126 + 21540570 I

a score=42581.000000
s ce10.chrX              5390582 353 + 17718866 GTGAACCGGTTTTCCGTAT--TTTC----------------------CAATTTTTCCTGGA----AACACTATTAGTACAGAATTGTCAAACTGTGTACCT------------CATATATCT-------AA--------TA--CTTCAA------TTTAAAA--------ATCATTTTAATTAACCATGAAGCATGAGCAGCGGA---AACATTCTGATTTTTGGAAAAGGCGTAAAATATCTCAATCAGGTGCA------GTTAAAATTTGAAAGC-----------------------ATTCTTTCAAAATTGAATTTTAAAAAAACATGTTTGTTTTCCAGCAATGGTGACACAATGCGAAAGCAATGGGTCAGTGACGTCACACAATACGAGTTCTGCATTTCAAAGAAACAACAGCAGGTATATCACTTTTTTGTACAAACTAGCTTAT---TT--
s cb4.chrX              10742409 349 + 21540570 ACGAACtggtttc--aaat--ttccggTAGAAAGCCAGGTAGTTA--cacttttctcattt----cccaCTAC---------GCCCTCAAAATCtatctttttatttttgatacaactttttgaa---taa--------ct--ccatca------tttcgaa--------aaact------tcatCATGAGACATGCGCGCTCTG---ATccttcagatttttggaaaaagagaaaaatcttgCAAGAAGGTAAATCatggaaaaaattctgtgagctacc-------------------gtaatccaaaaatgaaaca--------------tt---tttcagctatggTGACCCAATGCGAACGGAATGGATCGGTCACGTCACATAATACGAGTTCCGCTTTTCAACGAAATAACAGcaggt-----------------aattttcaaatt--ctt--
i cb4.chrX              I 126 C 0
s caeRem4.Crem_Contig0   2154015 348 -  4500979 GCAAACCAGTTTT---AAT--TTCCGGAAGGGAAGTAGGCagtca--tattttttcgatta----acAACT-----------------GAACTGAagcttt------------cgaatttttgaa---aaagaaacgtttt--ctatca-----------aa--------aatccgCTA--TCACCATGAAACATGAGCATCGCA---TGCAGTCCGATTTTTGGAAGAAGCGAAAAATATCGCAGTCAGGTAA-------CAAGTTCTCTGAGAATTAGCTT--AAAACTGAGAGAAAAGTCATTCGAAAACCAAATT--------------TGA--TTTCAGCTATGGTAACACAATGTGAGAGCAATGGATCGGTGACGTCACACAATACAACTTCCGCTTTTCAACGAAATAACAGCAGGT-----------------AAACTAGAAAATGACTT--
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626     10458 317 -  1189296 AAAAACCAGTATT--ATGTAGTCTtagaaaaatactt----tttgacCACTATTTGAATCT--ACATCACT-------------TCCCG------------------------TCgctttctcaa---aaa--------ccaacTAGAAGAATTATTTataa--------aaca------------atgaaacaTGAGCAGCGGA---ACCCTGCtgatttctggaaaaggagaaaaatctCTCATTCGGGTAA-------ACTGTTACCTAGATGC-----------------------ATGATCGTAATGTGAAATTTAAACAAA------TGG--TTTCAGCTATGGTAACACAATGCGAAAGCAATGGATCGGTGACATCGCACAACACGAATT---CTTTTCAACGAAACAATAGCAGGT-----------------AATACAGATTAG-------
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3670506 349 +  4147112 GAGAACTAGTTTA--AAAT--TCCGGCGAAGACAGTTGACagtcaatcacttttttctcctgaaCTCCACTAT---------AGCCcca------------------------gaattttttcat---aat--------tt--ccacAA-ATTTGTTTGTGATCTGATCTAATAT------TCATCATGAAGCATGAGCCAAAGA---AACGTAAtgatttttgggagaaaaggaaaatctCTCACTCAGgtaaagct---acagtaattgaaaaacaata-----------------aaaccaTCAAACAGTGAAGAC--AATAAA------TGAATTTCCAGCTATGGTGACACAATGCGAAAGCAATGGATCGGTGACGTCACATAATACAAGTTCCGCTTTTCAAAGGAACAACAGCAGGT-----------------AAAGTAGATAAA-------
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold18194   534067 297 +   823664 -----ccaatcca--aaat--ttt-----------------------catttttatcgcaC----CGCGTTGG----------------------------------------TAGTAATTTGAAGGCGAA--------TT--CTTATT---------------------ACTGT------CCAGAATGAAACATGATCaaaaaaaTGATCCAGCAGATTTTTGGGCTAAACGAAAAGTCTCCCATGCAGGTA--------CCAAAACTTTTAATACAATCTTTCCTCACT---------CATGTATAaatattaaact--------------tt---tttcagcAATGGTAACGCAATGTGAAAGCAATGGATCGGTAACGTCACACAATACAAGTTCCGCTTTTCAACGAAACAACAGCAGGT-----------------GAAACTGATTAGCATCTCT
i caeJap4.Scaffold18194 C 0 I 53

a score=-9492.000000
s ce10.chrX              5390935 34 + 17718866 AA---ATCATGTAGTACGTTTTTCT-----------------------------------CAGTCATTTCAG--------------
s cb4.chrX              10742758 86 + 21540570 cccagatttttgttttcttctattttccgattttcccaTGAGTGGTATATCCAgatctcattcttttttttcttatgaCATTTTGG
i cb4.chrX              C 0 I 53
s caeRem4.Crem_Contig0   2154363 37 -  4500979 CC---ATCTCtggtattgttttttt-----------------------------------ttctctatttcctca-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10775 33 -  1189296 -C---ATctatacttttttcttcat-----------------------------------ttcttgtcTTAG--------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670855 33 +  4147112 -A---ATCTATAGTTTTGTagtgtt-----------------------------------ctttctttttag--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   534364 53 +   823664 I

a score=-10030.000000
s ce10.chrX              5390969 94 + 17718866 CAAGAACATTGAACAGAAGAAAAAGAAATCTATAAAGTACAAGAAAAGTTGACAGAAAGAGTTCAAAGCGGTGGCACTTAT---TATTTAGATTTCT
s caeRem4.Crem_Contig0   2154400 25 -  4500979 -------------------------------------------------------------ttc---------tttttcccattttccc--atGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10808 18 -  1189296 ----------------------------------------------------------------------------TTCAG---TTCCTAGATGACT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670888 18 +  4147112 --------------------------------------------------------------------------tttttac---ttCCT--ATGGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   534364 53 +   823664 I
e cb4.chrX              10742844 53 + 21540570 I

a score=-24644.000000
s ce10.chrX              5391063 225 + 17718866 TGTGCACAGTCGTTTTTTGGTGTTATTTAAAATGTCGGTAGATAAATGATAATAGTTATATGAAAAGT------ATGTAAGATGTCAAAAAACCTTCAATCTTCAAAAACTGAAAGAAAAATTTATAACAGGCTCCGCCCCTTTGGTTCATTTTTTTAAAGTTACAGAAAAATGACATACCATTTTTAATAATAAAGTCATTTTCATATCCGTTTACACTATTAAGCAAAC
s caeRem4.Crem_Contig0   2154425  95 -  4500979 TCTGCAAACACTTCCTTC----TCATTTCTAATGAT----CATACAAGAATGTATATCC-----AAGT------AAAT------------------------------------------------------CTCGGCTT----------CTCAACTAAA-----------------GTTTATTCTGGTTACAGA------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     10826  82 -  1189296 TGTGTGAAGATTTGTGTT----TTATTTCTAT-------------CAGATCATATTTTT-----AAGT------ATGT---------------------------------------------------------------------------tgtgaaa-----------------ttcgatttttcttcataa---tat---CCAA-----------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670906  90 +  4147112 TGTGTTAAAATCTGTGTT----TTATTTCTAA-------------AAGATTATATTCAT-----AAGT------ATGT------------------------------------------------------------------------Gtctatcaaaat---------------ttctatatttttgacTAA---TATTTCCTTA-----------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   534417  81 +   823664 --TGTGAAGATTTGTGTT----TTATATATGa-------------ctgaaaatgttttc-----aagTTAGTAAATAT------------------------------------------------------------------------TTGTGCCAAA-TCATAAA---------CACAATGTCT--------------------------------------------
i caeJap4.Scaffold18194 I 53 C 0
e cb4.chrX              10742844  53 + 21540570 I

a score=72151.000000
s ce10.chrX              5391288 80 + 17718866 TTTCAGATATGGAGTTCCAATTGACAGTACTGCTGTCAAACAAGTTTATCGGGTACGATCGGAACGTCTGACGAATCGGT
s cb4.chrX              10742897 80 + 21540570 TTACAGATATGGAGTCCCTATTGATAGCATTGCGGTTAAACAAGTCTACCGGGTTCGATCGGAACGGTTAATCAATCGGT
i cb4.chrX              I 53 I 257
s caeRem4.Crem_Contig0   2154520 73 -  4500979 -------TATGGAGTCCCTATTGATAGTATTGCTGTCAAACAGGTTTATCGGGTTCGATCGGAACGTCTGACCAATCGGT
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold626     10908 79 -  1189296 TTCCAGATATGGAGTACCGATTGACAGTATTGCTGTCAAGCAAGTCTATCGGGTCCGATCGGAACGTTTAATCAATCGT-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3670996 79 +  4147112 ATTCAGATATGGTGTCCCTATCGATAGCATTGCTGTCAAACAAGTTTATCGTGTTCGATCAGAACGTCTATCCAATCGT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   534498 80 +   823664 TTGTAGATATGGAGTTCCGATTGATAGTACAGCTGTCAAACAAGTTTATCGGGTGCGATCTGAGCGATTATCAAATCGGT
i caeJap4.Scaffold18194 C 0 C 0

a score=-890.000000
s ce10.chrX              5391368 39 + 17718866 A--TGGTTTAAATTTGAAAACATAAACATTTAAAACTATTT
s caeJap4.Scaffold18194   534578 36 +   823664 AAatggttttttctttgatacttct-tatttttagct----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3671075  0 +  4147112 C
e cb4.chrX              10742977 257 + 21540570 I
e caeSp111.Scaffold626     10987  0 -  1189296 C
e caeRem4.Crem_Contig0   2154593 38 -  4500979 I

a score=156987.000000
s ce10.chrX              5391407 212 + 17718866 GTTTCAGAGTTCGAATAACGGATAGGTCACTTTATCTTGCACTGTTCGGTGTGATCCTTATGCTGGTAGAGTCTGAAATAACCGCGGAAAAATTTTACGGCGTTTCAAAAACTCATTGGATTTCGCAATCCCTTAGAGTGGGAGTCACGTGCTCAACAATTGCATTGCTCTACCATATCATTCTCTACCATCTCAACGATATTGTGGT---------------AATT
s cb4.chrX              10743234 227 + 21540570 ATTCCAGAGTTCGGATTACGGATAGATCGCTATATTCGGCACTGTTCGGTGTTATTCTCATGCTGATAGAATCGGAATTAACCGCTGAACGTGTTTATGGTGTCTCTAAGGATCATTGGATTTCTCAATCTCTCCGGGTCGGAGTTGCTTTTTCTACTATCATTTTGCTCTTCCATATTGTACTCTACCATTTGAATGATATCACGGTACGGCgtaacaaaaaaagg
i cb4.chrX              I 257 C 0
s caeRem4.Crem_Contig0   2154631 212 -  4500979 CTTTCAGAGTTCGAATCACGGATAGGTCACTTTACTTGGCTCTTTTTGGTGTCATACTAATGCTGGTTGAATCGGAAATTACTGCTGAAAGGATTTATGGTGTTTCGAAAGCACATTGGATCTCTCAATCCCTTCGAGTCGGTGTCACTTGTTCTACAATTGTTCTTCTATATCACATCATCCTATATCATTTAAATGATATTGTGGT---------------AGGA
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold626     10987 205 -  1189296 --------GTTCGAATCACGGACCGATCTCTTTATCTGGCCCTTTTCGGTGTTATTCTGATGCTAATAGAATCGGAATTCACTGCTGAAAGAATTTATGGTGTCTCAAAAACCCATTGGCTTTCACAGTCTCTACGAATCGGTGTCACTTTCTCAACGATTGTTCTTCTCTATCATATCGTCCTTTATCATTTGAATGATATTGTGGT--------------AAGGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3671075 205 +  4147112 --------GTACGAATTACGGATAGGTCACTTTACTTGGCTCTCTTTGGAGTTATTTTGATGCTGGTGGAGTCTGAAATCACTGCTGAAAGCATCTATGGAATCTCAAAAGATCATTGGATTTCACAGTCAATTCGAGTTGGTGTATTGTTCTCAACAATTGCTCTTCTTTATCATATTGTGCTCTATCATTTGAATGATATAGTGGT--------------AAGGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   534614 211 +   823664 -ttttAGAGTTCGAATCACCGATAGGTCGCTTTATTTGGCTTTGTTTGGTGTAATTCTCATGCTGGTCGATTCCGAATTAACTGCCGAAAAAGTGCATGGAGTGTCAAAAGATCACTGGCTCTCAATGTCCCTTCGGATTTGTGTAACTTGCTCTACGGTTGCTCTTCTTTATCATATTATTTTGTATCATTTGAATGATATTGTGGT---------------AAGT
i caeJap4.Scaffold18194 C 0 I 33

a score=-2563.000000
s ce10.chrX              5391619 7 + 17718866 TATAATT-
s cb4.chrX              10743461 7 + 21540570 aagaaat-
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2154843 7 -  4500979 GATAAAT-
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold626     11192 8 -  1189296 AATGAGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3671280 8 +  4147112 TCATAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   534825 33 +   823664 I

a score=-6492.000000
s ce10.chrX              5391626 27 + 17718866 -TTTCCGGCTCGTCTGT--TCACCTGTTTA
s cb4.chrX              10743476  5 + 21540570 ------------tcggg-------------
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold626     11200 26 -  1189296 AGTTGAATCTATTCTGAGATC---TGTCC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3671288 29 +  4147112 ATTAGGTGTTAGCCAAGAAGCAATTGTAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   534825 33 +   823664 I
e caeRem4.Crem_Contig0   2154850 26 -  4500979 I

a score=105965.000000
s ce10.chrX              5391653 118 + 17718866 TTACAGCTTGAGTTAGTGGACTGTGGCGCTGATGATTGGAGAGTAGTGGTAACGACAGAGCGAGTGATCCAATTTTGCATCGAGTTCATTTGCTGTGGAATTTGCCCACTGCCAGGTA
s cb4.chrX              10743481 118 + 21540570 TTTTAGCTCGAGTTAGTGGACTGTGGAGCAGATGATTGGCGGGTGGTGGTCACTACAGAAAGGGTTATTCAGTTTTGTGCGGAATTTGTGTGTTGTGCCATCTGCCCATTGCCAGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2154876 118 -  4500979 ttttagcTCGAACTGGTAGATTGTGGAGCTGATGATTGGAGAGTAGTGGTGACAACAGAACGTATCATTCAATTTTGCATTGAGTTCATTTGTTGTGCTATCTGTCCGTTACCTGGTA
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold626     11226 118 -  1189296 TTTTAGCTTGAATTGGTCGATTGTGGAGCAGATGACTGGAGAGTTGTGGTCACAACAGAACGGATTATTCAATTCTGCATGGAATTCATCTGTTGTGCCATCTGCCCATTGCCAGGTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3671317 118 +  4147112 TTTCAGCTTGAACTGGTCGATTGTGGTGCAGATGATTGGAGAGTTGTGGTTACAACGGAACGGGTTATTCAGTTTTGTATGGAGTTTGTGGCTTGTGCCATTTGCCCATTGCCAGGTA
i caePb3.Scfld02_0      C 0 I 132
s caeJap4.Scaffold18194   534858 118 +   823664 tttCAGTTGGAGCTGGTAGACTGCGGAGCTGATGACTGGAGGGTGGTGGTAACAACAGAACGTATTGTACAATTTATAGTGGAGTTCATTTGCTGTGCTGTTTGTCCAATACCAGGTA
i caeJap4.Scaffold18194 I 33 C 0

a score=910.000000
s ce10.chrX              5391771 1 + 17718866 A
s cb4.chrX              10743599 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2154994 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 189
s caeSp111.Scaffold626     11344 1 -  1189296 A
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   534976 1 +   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3671435 132 +  4147112 I

a score=67.000000
s ce10.chrX              5391772 1 + 17718866 A
s cb4.chrX              10743600 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     11345 1 -  1189296 G
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   534977 1 +   823664 A
i caeJap4.Scaffold18194 C 0 I 141
e caePb3.Scfld02_0       3671435 132 +  4147112 I
e caeRem4.Crem_Contig0   2154995 189 -  4500979 I

a score=302.000000
s ce10.chrX              5391773 2 + 17718866 AA
s cb4.chrX              10743601 2 + 21540570 GA
i cb4.chrX              C 0 I 35
s caeSp111.Scaffold626     11346 2 -  1189296 AA
i caeSp111.Scaffold626  C 0 I 161
e caePb3.Scfld02_0       3671435 132 +  4147112 I
e caeJap4.Scaffold18194   534978 141 +   823664 I
e caeRem4.Crem_Contig0   2154995 189 -  4500979 I

a score=0.000000
s ce10.chrX              5391775 576 + 17718866  
e caePb3.Scfld02_0       3671435 132 +  4147112 I
e caeJap4.Scaffold18194   534978 141 +   823664 I
e cb4.chrX              10743603  35 + 21540570 I
e caeSp111.Scaffold626     11348 161 -  1189296 I
e caeRem4.Crem_Contig0   2154995 189 -  4500979 I

a score=910.000000
s ce10.chrX              5392351 1 + 17718866 T
s cb4.chrX              10743638 1 + 21540570 T
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2155184 1 -  4500979 T
i caeRem4.Crem_Contig0  I 189 C 0
s caePb3.Scfld02_0       3671567 1 +  4147112 T
i caePb3.Scfld02_0      I 132 C 0
s caeJap4.Scaffold18194   535119 1 +   823664 T
i caeJap4.Scaffold18194 I 141 C 0
e caeSp111.Scaffold626     11348 161 -  1189296 I

a score=635188.000000
s ce10.chrX              5392352 860 + 17718866  
s cb4.chrX              10743639 855 + 21540570  
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   2155185 833 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold626     11509 822 -  1189296  
i caeSp111.Scaffold626  I 161 I 33
s caePb3.Scfld02_0       3671568 830 +  4147112  
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18194   535120 885 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5393212 3 + 17718866 ATT
e caePb3.Scfld02_0       3672398 35 +  4147112 I
e caeJap4.Scaffold18194   536005 0 +   823664 C
e cb4.chrX              10744494 39 + 21540570 I
e caeSp111.Scaffold626     12331 33 -  1189296 I
e caeRem4.Crem_Contig0   2156018 38 -  4500979 I

a score=-2001.000000
s ce10.chrX              5393215 457 + 17718866 TATTAATTAATGAAGGAGTAGTTGACATGAGGA--------AATTCAAGTGCAGTACATATTTAAATATTTACTGTGGGGAAAATAAACAGGAAAATTCCGTTGA---------GAATGTG--AATTTTTGGAATTGCCGCCCAAATTCTTGACATC-----CTAGAATGTT----TTAATTTCAAAAAATTGTTTGGACGATGTCATAGCTTGAGTTCGTTAAAATTGGAAATTTTTGGGTGTTCTAAAACTGAAAAATTCTGAATACGTAAATGTAC--------AAAGGTGAGAAATTACTCCAATTTTTACGCGCATGGGTCTCGCCACGATGACAACAAGTTACTGTAACTCGTGCCAAATTATAAGTCGCTACTTCATCATTTTTTTTTTCAAAAATTGTTTTCCAAAGCCAGTGTCGCATTTAAATTGAAAAATATGTAATAGCGTCCCGTAAAGAGACACAAAATACAATCGTTCATTGACCACG
s caeJap4.Scaffold18194   536005 383 +   823664 -----------GAGGGAGTAAtgggtataagtatagaatccgaccccattTAAGTTCATTTGGCGACCCCAACTGCAGAG----TATAATAGAAGACCCCAATGGTACCTCCTCGGACGCGGCAAGACCAGGAGTTGGTTTCTAAAATCCTGGCGTcaaattctaaactcttggggttaaattc--taaactcttggG-----GTCGAATACTAAACTCttttaaaat--aagttttcagaTG-----ATATGGAAGGTTTTGGGGTTGCTAAATATACTCTacagttggggttggaaagta----------tacgggcctggg-----------------------------------gtcaaattctatacgATTACCTAAGAG---TTTATTTCACAaccccatttctgttgttggggtcg---------------------gatagtataccattcagag-----------tatatttca-tgaccccg
i caeJap4.Scaffold18194 C 0 I 89
e caePb3.Scfld02_0       3672398  35 +  4147112 I
e cb4.chrX              10744494  39 + 21540570 I
e caeSp111.Scaffold626     12331  33 -  1189296 I
e caeRem4.Crem_Contig0   2156018  38 -  4500979 I

a score=0.000000
s ce10.chrX              5393672 147 + 17718866 TGGTGAGACCAATGCTTATAAAATTTTCATATTTTGATTTTTACGTAATATAAAAATAAATATGTCAATGTGCGAAACATAAAACAAAATTTCGATTCCCTCGTATAGTAATATCCGCGGAGATATAAAGGTTTTTCCCCGCTCAAC
e caePb3.Scfld02_0       3672398  35 +  4147112 I
e caeJap4.Scaffold18194   536388  89 +   823664 I
e cb4.chrX              10744494  39 + 21540570 I
e caeSp111.Scaffold626     12331  33 -  1189296 I
e caeRem4.Crem_Contig0   2156018  38 -  4500979 I

a score=-1202.000000
s ce10.chrX              5393819 111 + 17718866 CAATTTTCCCAATTATACTTTATAAAAATGTTAGTTTAAGAATCCAAACGTGTCTACATACTACTATTTCTTCTAAAAACATACGAATAGACTGTAAATCTTAAATTCAAA
s caeJap4.Scaffold18194   536477  53 +   823664 cggattctatacttataccgaGTAATGAACTTTGTTTAAG---------------------------------TAA------------------------TTAAGTTT-AA
i caeJap4.Scaffold18194 I 89 C 0
e caePb3.Scfld02_0       3672398  35 +  4147112 I
e cb4.chrX              10744494  39 + 21540570 I
e caeSp111.Scaffold626     12331  33 -  1189296 I
e caeRem4.Crem_Contig0   2156018  38 -  4500979 I

a score=910.000000
s ce10.chrX              5393930 1 + 17718866 T
s caeRem4.Crem_Contig0   2156056 1 -  4500979 T
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold626     12364 1 -  1189296 t
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       3672433 1 +  4147112 t
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18194   536530 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10744494 39 + 21540570 I

a score=252541.000000
s ce10.chrX              5393931 812 + 17718866  
s cb4.chrX              10744533 988 + 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2156057 834 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     12365 793 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3672434 783 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   536531 943 +   823664  
i caeJap4.Scaffold18194 C 0 I 34

a score=1083.000000
s ce10.chrX              5394743 3 + 17718866 GAA
s cb4.chrX              10745521 3 + 21540570 aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2156891 3 -  4500979 GAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13158 3 -  1189296 Gta
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3673217 3 +  4147112 gga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   537474 34 +   823664 I

a score=546.000000
s ce10.chrX              5394746 1 + 17718866 A
s cb4.chrX              10745524 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     13161 1 -  1189296 a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3673220 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   537474 34 +   823664 I
e caeRem4.Crem_Contig0   2156894 0 -  4500979 C

a score=-1954.000000
s ce10.chrX              5394747  3 + 17718866 CTT-----------------
s caeSp111.Scaffold626     13162  3 -  1189296 gtt-----------------
i caeSp111.Scaffold626  C 0 I 24
s caePb3.Scfld02_0       3673221 20 +  4147112 agttttttgaaaagtttctt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   537474 34 +   823664 I
e cb4.chrX              10745525  0 + 21540570 C
e caeRem4.Crem_Contig0   2156894  0 -  4500979 C

a score=933.000000
s ce10.chrX              5394750 16 + 17718866 AAAATAAAGTGAGTTT
s caePb3.Scfld02_0       3673241 16 +  4147112 caaataaaattagTTT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold18194   537474 34 +   823664 I
e cb4.chrX              10745525  0 + 21540570 C
e caeSp111.Scaffold626     13165 24 -  1189296 I
e caeRem4.Crem_Contig0   2156894  0 -  4500979 C

a score=0.000000
s ce10.chrX              5394766 379 + 17718866 CTGATGTGCACATTGTGCCACATTTCGTTGGCAATATATTCCCGATCTGCCCAAATTAAAGGTGGGCCTTCCTTTAGTGCTGTTGTTACCGAATATCGTAGTACAACTTTTTTTTTAATGGAACATTTTCATTTCGAGACAAAAAGCGATGTTAACTCAGTTGTCATAAACTTTTGACATCGATCAAAAAATTCTTCAAGCTTCATTTTTAAATAAGGTTCGAACATTCGATAGTGCTTCAGATATCTCAAAAATTGGTGGAAACTCAGTTTTTAAGACATTTCGTCTAGAGATACAAAAAATTTCTAAAATTTTAAAACCCATTTAGTATGATATTTTTCAATTTCGAATCTTAAAAATGACTTTTAATTATTTCCCC
e caePb3.Scfld02_0       3673257   6 +  4147112 I
e caeJap4.Scaffold18194   537474  34 +   823664 I
e cb4.chrX              10745525   0 + 21540570 C
e caeSp111.Scaffold626     13165  24 -  1189296 I
e caeRem4.Crem_Contig0   2156894   0 -  4500979 C

a score=-195.000000
s ce10.chrX              5395145 12 + 17718866 ACAAACCATAGG
s caeRem4.Crem_Contig0   2156894 10 -  4500979 AAGATCCAtg--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3673257  6 +  4147112 I
e caeJap4.Scaffold18194   537474 34 +   823664 I
e cb4.chrX              10745525  0 + 21540570 C
e caeSp111.Scaffold626     13165 24 -  1189296 I

a score=-1307.000000
s ce10.chrX              5395157 35 + 17718866 CCACCTTTATCTCTGAAATAACAAGCGTCTGGTTG
s cb4.chrX              10745525 23 + 21540570 atacaATTATTTGTGATAC------------TGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2156904 16 -  4500979 -------tattttggaaaa------------tctc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3673257  6 +  4147112 I
e caeJap4.Scaffold18194   537474 34 +   823664 I
e caeSp111.Scaffold626     13165 24 -  1189296 I

a score=686.000000
s ce10.chrX              5395192 8 + 17718866 TCAAATTT
s cb4.chrX              10745548 8 + 21540570 ACAAATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2156920 8 -  4500979 tcATGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13189 8 -  1189296 TCAAAGGA
i caeSp111.Scaffold626  I 24 C 0
e caePb3.Scfld02_0       3673257 6 +  4147112 I
e caeJap4.Scaffold18194   537474 34 +   823664 I

a score=-618.000000
s ce10.chrX              5395200 1 + 17718866 -T
s cb4.chrX              10745556 2 + 21540570 CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2156928 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13197 1 -  1189296 -C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3673263 1 +  4147112 -T
i caePb3.Scfld02_0      I 6 C 0
e caeJap4.Scaffold18194   537474 34 +   823664 I

a score=90440.000000
s ce10.chrX              5395201 114 + 17718866 CACCTGGAAGTTCGATATAATTGGCATTCTTTTTGATTTTCATGCCCAGCGGTGGCAGGTTTTCTTGTGAGTTGAATATTATATCAGATTCTAATGTGGATGGGGTTTCTGAAA
s cb4.chrX              10745558 111 + 21540570 TACCAGGCAACTCAATGTAGTTtgtatttttcttgattttcaatcCAAGCGGTGGTAGGTTTTCCTGAGTGTCAAAAATG---CCATCTTCTGATGTTGAGGGAGTttcttgaa
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2156930 114 -  4500979 TACCTGGAAGTTCGATGTAGtttgcatttttcttgattttcataCCAAGTGGCGGTAGATTTTCTTGGGTGTCAAAAATGAGCTCGGTTTCAGATGTTGATGGTGTTTCTGAAA
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626     13198 114 -  1189296 TACCTGGAAGTTCGATATAATTgatgtttttcttgattttgatTCCAAGGGGCGGAAGGTTCTCTTGAgtgtcaaaaatcaaatcagaTTCAGAAGTAGATGgagtttctgaaa
i caeSp111.Scaffold626  C 0 I 38
s caePb3.Scfld02_0       3673264 114 +  4147112 TACCAGGAAGCTCAATATAGTTTgcgttctttttgattttcattccaaGTGGTGGTAGGTTTTCTTGGGTGTCGAAGATCAAATCGGATTCAGAAGTGGATGGAGTTTCTGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   537508 114 +   823664 CACCTGGAAGTTGAACGTAATTTGGTGCTTTCTTGGCTTTCAGGCCGAGAGGAGGTAGATTTTCTtgaatgtcaaaaattatatCATCTTCTGAAGCAGCTGgcgtttctgaaa
i caeJap4.Scaffold18194 I 34 C 0

a score=-10953.000000
s ce10.chrX              5395315 39 + 17718866 AGGTTAAGGTAGAACGTTTGGT---------GTAATTGATAGAACATG-----
s cb4.chrX              10745673 23 + 21540570 -----aaatta-----ttcACA---------------TGTCAAAAGTT-----
i cb4.chrX              I 4 I 12
s caeRem4.Crem_Contig0   2157055 25 -  4500979 -----AAATTA--ATGTTCATA---------------TTTGAACAAT------
i caeRem4.Crem_Contig0  I 11 C 0
s caePb3.Scfld02_0       3673378 34 +  4147112 ---TAGAATAAGAATGTTTGCA-----------AAATTATGGAGAATG-----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   537622 48 +   823664 -----atgttctaCTGTTGATTTTCTAATgtgttaatttttgaaattctcaAG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     13312 38 -  1189296 I

a score=31950.000000
s ce10.chrX              5395354 84 + 17718866 TACCTGCGGTAAGATCAACAGTGTAGAATGT---TGTTGTAGTAGAATCAGAGTAA---GCAGTTGTGG---------TTTCTATTGCCCGGGTGCTTG
s cb4.chrX              10745708 96 + 21540570 TACCAGCTGTTAAGTCAACTGTATAGAACATAGAAGTAGTTGTTGAATCAGAGGTC---GCAGTTGAAGCTTCAGGTTTTGGGGTAGTTTTCGTAGTTG
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2157080 96 -  4500979 TACCAGCTGTTAAATCTACTGTGTAGAACATCGATGTTGTCGTAGCATCAGATTCC---GATGAAGAAGCAGAAgtggttggtgtggtttgtgtggttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13350 96 -  1189296 TACCAGCAGTGAGATCCACTGTGTAAAACATTGACGTGGTTGTAGAATCTGAACTTGgatcagaagaagttgatgGTGTTGCTGATGAT---GTAGTTG
i caeSp111.Scaffold626  I 38 C 0
s caePb3.Scfld02_0       3673414 93 +  4147112 TACCAGCGGTAAGGTCTACGGTATAGAACATAGAAGTGGTTGTCGAATCTGAATTC---TCAGTTGTAGACGAAGGCGTTGTTGAGGCA---GTGGTTG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   537670 84 +   823664 TACCTGCAGTAAGATCAACTGTATAGAGCAT---TGAGGTTGTAGAATCTGGCACT---TGTGTAGTTG---------TTTCCACCTTCtgagttgttg
i caeJap4.Scaffold18194 C 0 I 29

a score=-5517.000000
s ce10.chrX              5395438 29 + 17718866 AGGAAGCAG------ACGTGGATGGTGAGCCAATA
s cb4.chrX              10745804 23 + 21540570 GAACCAC------------TGTTGGATCCCGAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2157176 29 -  4500979 tcattgttg------ttggtgttggATCCCGGACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13446 29 -  1189296 TAGATGGTG------TAGTTGTTGGATCTTGAACG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3673507 35 +  4147112 TAGTGCTTGAGACAACAGTAGAGGGGGTTTTGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   537754 29 +   823664 I

a score=400463.000000
s ce10.chrX              5395467 601 + 17718866  
s cb4.chrX              10745827 538 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2157205 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     13475 574 -  1189296  
i caeSp111.Scaffold626  C 0 I 171
s caePb3.Scfld02_0       3673542 580 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   537783 600 +   823664  
i caeJap4.Scaffold18194 I 29 C 0

a score=234.000000
s ce10.chrX              5396068 3 + 17718866 ATG
s cb4.chrX              10746365 1 + 21540570 --A
i cb4.chrX              C 0 I 63
s caeRem4.Crem_Contig0   2157789 1 -  4500979 --g
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3674122 3 +  4147112 AAG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   538383 3 +   823664 ATG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     14049 171 -  1189296 I

a score=454.000000
s ce10.chrX              5396071 3 + 17718866 GAA
s caeRem4.Crem_Contig0   2157792 3 -  4500979 gag
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3674127 3 +  4147112 GGG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   538386 3 +   823664 AAA
i caeJap4.Scaffold18194 C 0 I 57
e cb4.chrX              10746366 63 + 21540570 I
e caeSp111.Scaffold626     14049 171 -  1189296 I

a score=182.000000
s ce10.chrX              5396074 2 + 17718866 AA
s caeRem4.Crem_Contig0   2157795 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3674130 0 +  4147112 C
e caeJap4.Scaffold18194   538389 57 +   823664 I
e cb4.chrX              10746366 63 + 21540570 I
e caeSp111.Scaffold626     14049 171 -  1189296 I

a score=-657.000000
s ce10.chrX              5396076 76 + 17718866 CTACTAGTAATGTTGACATGCAA----TGAAAATG--GTATTGAAATTACTATACACATGAAATGCAATTTGAACATTTTTG
s caePb3.Scfld02_0       3674130 64 +  4147112 TTA--AACACTTAAGAAGTGCAACATTTGAGaatgcagtttttgaaaaagtgaaca----------agtTTGAACA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   538389 57 +   823664 I
e cb4.chrX              10746366 63 + 21540570 I
e caeSp111.Scaffold626     14049 171 -  1189296 I
e caeRem4.Crem_Contig0   2157797  0 -  4500979 C

a score=-4710.000000
s ce10.chrX              5396152 91 + 17718866 AGCTCAATTG--AACACATTGTGTTCGAGTATCAGGAAATCGCGAAAAATTCTTAAAAACATAATTTTCCACATTCTGAAACGCGTACCCGCG-----------
s cb4.chrX              10746429 56 + 21540570 AGCTCAATTG--AAGTCATTTC-TTTG---ATTATAATGTC--------CACCTAGAAAt-----------------------cattaccgta-----------
i cb4.chrX              I 63 C 0
s caePb3.Scfld02_0       3674194 72 +  4147112 -----AATCGACAAAACAGTT--TCCG---ATCCGAAAGTCG-AAAAGACGATGAAAAATG---------------------GCAGTTTCGGATTATCTCTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   538389 57 +   823664 I
e caeSp111.Scaffold626     14049 171 -  1189296 I
e caeRem4.Crem_Contig0   2157797  0 -  4500979 C

a score=-45661.000000
s ce10.chrX              5396243 375 + 17718866 TTTGGATATTGTCGCAACAAACGCAAATAACATAACTTCTTAGTACTTTTCGTGCCCGCTTTTCATAGTTTTTCAGGATAATTGGAACGAATAGGAATATTTTTGATTGTCTGGTAT-----TTTTTTTTGAAAATAAAAAAATACATGAGACAGTTGCAAACTTTTTGTGAAGAGACTTTTTTAAATAAATGCTTTCGACTTTTTCAATTAGAATATTGCGTTATGAAAACGACCTAGGTATCCATTGAATTCACAGCTGTAGAATTTCTGACTGGCCTTAAACATTTTAGAAAATTGGTAGTTAACTGTCGTAGCTAATAGTCCAGAACAAATATGTATCAAGTTGAGTTGTAAACCGTTACCAAATTACTAATAAAT---
s cb4.chrX              10746485 212 + 21540570 ----------------------------------------------ttttc---------tgtaaaagatatcaaaaagtggtcaactgacaa--aatatttacgaagattgaaaaaatattttttctgttaa--------------------------tcACTTCTT------AATATTTTTTACGAGAGCC---GCGA-----TAGATTGA-------CGGTTTGGGAA----------------------------------GCGTTATACTA----TAGTCTTCACGGTATCATGGT--TT--CGATGAGCACTC-TGGT--------------------AACCAAtgtaaaagttttttaaaat--cttatCCTTT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2157797 209 -  4500979 tttggaga--------------------------------------ttttcatG-----TCATAACTGATTTTTGAGACCCCTGAAGTT------CATAGTTATCCTAATTTGAAAG-----TTTACTATGGA--------------------------CAACT--------------TTGTTTGCACAACCC--------------AATtaa-------caataataaaa----------atccATTG--TT---------TCCGTGTTTTACTA----TTAGCATAATAGGATCACCGC--CTACTAATAGGAAA---------------------------ATCTAATTTGATTGTTTCACCGAAT---TAGTGTTTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3674266 194 +  4147112 ------------------------------------------------CTC---------GAAAAATGATGTATCGAACTTTGGAAGTTGAAAGCACTAGTCCCGAATAC------------TTTCCTATCTA--------------------------TTACTcgttttcttcacttctttctacgaaa-----------------aactca------------ttgaaa----------aaccTTTG--TT--CGATTTACCCATGTTTAAC-------------------ACCCTGAT--TT--CATTCGTAAGTG-------------------------ATCGactcataacttttttttgttt---taatccCTAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   538389  57 +   823664 I
e caeSp111.Scaffold626     14049 171 -  1189296 I

a score=1840.000000
s ce10.chrX              5396618 6 + 17718866 ATACTA
s cb4.chrX              10746697 6 + 21540570 TTACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2158006 6 -  4500979 TTACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     14220 6 -  1189296 ACACTT
i caeSp111.Scaffold626  I 171 C 0
s caePb3.Scfld02_0       3674460 6 +  4147112 CTACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   538389 57 +   823664 I

a score=451925.000000
s ce10.chrX              5396624 510 + 17718866  
s cb4.chrX              10746703 513 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2158012 511 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     14226 484 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3674466 511 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   538446 505 +   823664  
i caeJap4.Scaffold18194 I 57 I 2380

a score=-4712.000000
s ce10.chrX              5397134 71 + 17718866 CAC--------------TA-----------CATG--CCGACCACAAT------TTTGATATAATTAA--GAATATACTGATAACATAAACTCGTTTTTATTACTTT
s cb4.chrX              10747216 79 + 21540570 CACTATTTGGGATTGCATACCG--------ATTGATAAGACGGCGATACATACACTGATA-ACTATATGTGGTATAGTAATAAAA------------------TCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2158523 66 -  4500979 CAC---TTGGCAC----TATCA--------AATG------CAACGAT------AGTGATA-ACTATA--TGATATAATGATAAcatgaacat----------tttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     14710 68 -  1189296 CAT--------------AATCACA------AATG---CTACAATGATACAAA-TATGATA-ACTATA--CTATATACTGATaacat-aaatt----------tttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3674977 75 +  4147112 ttt--------------tatcaaaaattggaatg---tgACCATGCCACGGA-GTTGATA-ACTATA--CTATATACTGATAacatgaaact----------tttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   538951 2380 +   823664 I

a score=627663.000000
s ce10.chrX              5397205 1163 + 17718866  
s cb4.chrX              10747295 1178 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2158589 1130 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 58
s caeSp111.Scaffold626     14778 1110 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3675052 1115 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   541331 1134 +   823664  
i caeJap4.Scaffold18194 I 2380 C 0

a score=-17631.000000
s ce10.chrX              5398368 74 + 17718866 TCCTACGACGTAAATCCCCATTGCAA-----------ACAAAAAAA----------GTGTTGCAACCTTTCTA-TTTGCTGGGTAGCTTTCCCTAA---
s cb4.chrX              10748473 22 + 21540570 -------------------------------------ataaaagaa--------------tataatatttttg--------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     15888 41 -  1189296 -------atttt--------tttcaaatattaatCCCGtaaacaaa--------------taaaatgttt-----------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3676167 56 +  4147112 -------TTTTTACTCCGCATTGCAACATTTGATCACATAAACAAA-----------CACTGAAACAATTTGAG-------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   542465 68 +   823664 --------ctttcataTGTATTATGCCGATCTGAAACGCAAACAATTCCGTTTGTTGCATTACGAGATTTGCA-----------------------CAA
i caeJap4.Scaffold18194 C 0 I 11
e caeRem4.Crem_Contig0   2159719 58 -  4500979 I

a score=396434.000000
s ce10.chrX              5398442 805 + 17718866  
s cb4.chrX              10748495 756 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2159777 817 -  4500979  
i caeRem4.Crem_Contig0  I 58 C 0
s caeSp111.Scaffold626     15929 808 -  1189296  
i caeSp111.Scaffold626  C 0 I 55
s caePb3.Scfld02_0       3676223 836 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   542544 812 +   823664  
i caeJap4.Scaffold18194 I 11 C 0

a score=-1170.000000
s ce10.chrX              5399247  8 + 17718866 CGTTTGG-----T
s cb4.chrX              10749251  7 + 21540570 -CATTGG-----C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2160594 12 -  4500979 -ATCTGGAGCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3677064  3 +  4147112 -----GG-----T
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   543356  8 +   823664 GATCTGg-----t
i caeJap4.Scaffold18194 C 0 I 18
e caeSp111.Scaffold626     16737 55 -  1189296 I

a score=-2475.000000
s ce10.chrX              5399255 19 + 17718866 TTTCCC------TAAAACATG----GACA
s cb4.chrX              10749258 16 + 21540570 TCTCTTC-----TATAAcatt--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2160606 21 -  4500979 Tctcttctgaaataaaaaatg--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3677067 25 +  4147112 TTCCTCGGgcctgaaaatatgaatg----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   543364 18 +   823664 I
e caeSp111.Scaffold626     16737 55 -  1189296 I

a score=722.000000
s ce10.chrX              5399274 14 + 17718866 ATTGTTATTTTATT
s cb4.chrX              10749274 11 + 21540570 --tcgtatttttt-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2160627 12 -  4500979 --tgatattttatt
i caeRem4.Crem_Contig0  C 0 I 15
e caePb3.Scfld02_0       3677092  0 +  4147112 C
e caeJap4.Scaffold18194   543364 18 +   823664 I
e caeSp111.Scaffold626     16737 55 -  1189296 I

a score=351.000000
s ce10.chrX              5399288 5 + 17718866 CGAGT
s cb4.chrX              10749285 5 + 21540570 cgaat
i cb4.chrX              C 0 I 9
e caePb3.Scfld02_0       3677092 0 +  4147112 C
e caeJap4.Scaffold18194   543364 18 +   823664 I
e caeSp111.Scaffold626     16737 55 -  1189296 I
e caeRem4.Crem_Contig0   2160639 15 -  4500979 I

a score=0.000000
s ce10.chrX              5399293 540 + 17718866  
e caePb3.Scfld02_0       3677092   0 +  4147112 C
e caeJap4.Scaffold18194   543364  18 +   823664 I
e cb4.chrX              10749290   9 + 21540570 I
e caeSp111.Scaffold626     16737  55 -  1189296 I
e caeRem4.Crem_Contig0   2160639  15 -  4500979 I

a score=584.000000
s ce10.chrX              5399833 17 + 17718866 TTTGCTCCCAGTTTTTC
s caePb3.Scfld02_0       3677092 17 +  4147112 ttTGCATTCATTTTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   543364 18 +   823664 I
e cb4.chrX              10749290  9 + 21540570 I
e caeSp111.Scaffold626     16737 55 -  1189296 I
e caeRem4.Crem_Contig0   2160639 15 -  4500979 I

a score=-811.000000
s ce10.chrX              5399850  3 + 17718866 TAC-------
s cb4.chrX              10749299  3 + 21540570 TAA-------
i cb4.chrX              I 9 C 0
s caePb3.Scfld02_0       3677109 10 +  4147112 TAATAGATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   543364 18 +   823664 I
e caeSp111.Scaffold626     16737 55 -  1189296 I
e caeRem4.Crem_Contig0   2160639 15 -  4500979 I

a score=3128.000000
s ce10.chrX              5399853 20 + 17718866 AACTCACCTTCATTATTGCG
s cb4.chrX              10749302 20 + 21540570 GAATTACTTTCATAAGCGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2160654 20 -  4500979 aactgaCTGTCATGATAAGT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626     16792 20 -  1189296 AACTAACATGCATCAAAGTT
i caeSp111.Scaffold626  I 55 C 0
s caePb3.Scfld02_0       3677119 20 +  4147112 GATTTacttccatcaatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   543364 18 +   823664 I

a score=98224.000000
s ce10.chrX              5399873 127 + 17718866 TGACAAATTGTTGCAGCAAGTGGGTTTTTTAGTATACCTTCTATCACTGTATCAATTTGGTCGATTCCCACTTGAAATCCCATATCCGGAATCAAAACTTTATCCTTATACGGGTCACATCCTAAAA
s cb4.chrX              10749322 127 + 21540570 TGACACAGCTGGACGGCTAttgggtttttcaaaatagcttCAACCGTTGAGTCAATAGTGTCAATTCCCACTTGGAATCCCATGTCGGGAATCAACACTTTATCTTTGTAAGGGTCGCATCCTGCAA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2160674 127 -  4500979 TGACAAATCTGAACAGCTATCGGATTCTTTAATAGAGCCTCAATAGTTGAGTCAAGCGTGTCAATTCCTACTTGGAATCCCATATCAGGAATCAAAACTTTATCTTTGTACGGGTCACACCCtaaaa
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     16812 127 -  1189296 TGACAAAGTGTAATAGCAAGGGGGTTCCTTAGTATAGCTTCAATTGTAGAATCGAGTTGGTCAATACCCACTTGGAATCCCATATCAGGAATCAAGACTTTATCCTTGTAAGGATCACAGCCTTAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3677139 127 +  4147112 tgacaaagCGTAACTGCGagtggatttttcaaaataccctCAACTGTTGAATCCAGTGAATCCACTCCAACTTGGAATCCCATATCCGGAATTAGTACTTTATCTTTGTATGGGTCACAACCTGgaa
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold18194   543382 127 +   823664 TGGCAAAGAGTAACGGCGAGgggatttttcagcaatttttccacAGTAGAATCAAGTTTATCGATACCGACTTGGAATCCAATGTCAGGAATCAGAACTTTGTCTTTGAAAGGATCACAtcctgaaa
i caeJap4.Scaffold18194 I 18 C 0

a score=-12646.000000
s ce10.chrX              5400000 30 + 17718866 CGTGATATTTCACTC----------AAT----ACTTTGAAAACT-------------
s cb4.chrX              10749452 23 + 21540570 TATGTTATTGATctc---------------------cgaaaaaa-------------
i cb4.chrX              I 3 I 6
s caeRem4.Crem_Contig0   2160804 22 -  4500979 tgttgtatt-ACCAC---------------------TGCAAACA-------------
i caeRem4.Crem_Contig0  I 3 I 5
s caeSp111.Scaffold626     16939 28 -  1189296 -----TATTGATGTCATG-------AAT----TTTTCgcatatt-------------
i caeSp111.Scaffold626  C 0 I 5
s caeJap4.Scaffold18194   543509 42 +   823664 ---------------atgaaaaaaaaattcaatcatTACAAATTAAGTTCCAAAGCT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3677266 33 +  4147112 I

a score=87230.000000
s ce10.chrX              5400030 117 + 17718866 TTTT-------ACCTGCACACGACTTGTTCGGGTTGAACACAAATGTTTGAATTTGGCGGAACTCCATGAATTCTCCATTTTCAGAAAAGTTTAATTTGTCCATAGTAAGAATCTCACTGAAAT
s cb4.chrX              10749481 117 + 21540570 ttaa-------aCCTGGACACGACTTGTTTGCATTGAAAACAAAAGTCTGAATTTGACGAAATTCCATAAATTCTCCATTTGCACTGAAGTTCACCTTATCCATGGTGATGAtctcactgaaat
i cb4.chrX              I 6 I 4
s caeRem4.Crem_Contig0   2160831 124 -  4500979 TTAACTGTTTCACCTGGGCAAGACTTGTTGGGATTGAACACGAAGGTTTGAACTTGCCGGAACTCCATGAAATTTCCATTATCCGTAAAATTCACATGGTCCATAGTGATGATTTCACTGAGAA
i caeRem4.Crem_Contig0  I 5 I 4
s caeSp111.Scaffold626     16972 118 -  1189296 tcat------caccTGGACAAGACTTATTCGGATTAAACACAAATGTCTGAATCTGACGGAACTGCATGTACTCTCcatttgtcgaaaaatttaccATATCCATGGTAATGATTTCACTGTGAt
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3677299 117 +  4147112 TTAT-------ACCCGGGCACGATTTGTTTGggttgaaaacaaaagtttgaatttgacgGAACTCCATGAATTCTCCATTGGCAGAAAAATTTACTTTGTCCATGGTGATGATTTCACTGGAAT
i caePb3.Scfld02_0      I 33 I 25
s caeJap4.Scaffold18194   543551 120 +   823664 ----TTTGTTTACCAACACACGACTTGTTCGGATTAAACACAAACGTCTTCACTTGATGAAACTGCATGAATTCACCATTTTCCGAGAAGTTATATCCGTCAATCTTGATTATTTCACTGAAAT
i caeJap4.Scaffold18194 C 0 C 0

a score=-7926.000000
s ce10.chrX              5400147 24 + 17718866 GAAATAAT--TTGAAATACTTCG-----TAG-
s cb4.chrX              10749602 27 + 21540570 ----ttctgaatgccatttttcgttttccaa-
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2160959 26 -  4500979 TAAATCGTGGGCGAAATTGTTAG-----AAA-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626     17090 23 -  1189296 aacattttgtttttatttcttca---------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   543671 24 +   823664 ---ATTAGACTAACAAGTTTTCA-----GTAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3677416 25 +  4147112 I

a score=161097.000000
s ce10.chrX              5400171 198 + 17718866 -----CTAGAAATCCTTACTCAAATGCATAGGGACCCTTTTCTCGAACATCCGGGTAAATTGCTCGATTCATTATTCCGATTGTGTTGGTGTAGTCATAAACCCAGTACTGCATAGTAGAAATGTATTTGGAATTGACCCAACTGTCAGTAAAAGAGTTGAGTGTTCCATCAGCATTCAACCCTAGAACTTTGCTCTGAAAAA
s cb4.chrX              10749629 195 + 21540570 ------tttcaa--ctCACTCATAAGCATAGGGACCTTTTTCCCGAACATCAGGATACAGTGCTCTATTCATAATTCCAATTGTATTTGTGTAATCGTAAACCCAATATTGCATAGTAGAAATATATTTGGAATGTACCCAACTGTCGGTGAATGAGTTTAAAGTTCCATCGTCATTGGTTCCTAACACTTTTCCCTAAAATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2160985 195 -  4500979 ------ATTAAA--CTCACTCATATGCGTATGGTCCCTTTTCTCTAACATCCGGGTATAGGGCTCTGTTCATGATACCAATAGTGTTTGTGTAATCGTACACCCAATACTGCATTGTTGAAATATATTTAGAGTTTACCCAACTATCAGCAAATGAGTTCAATGTTCCGTCATCATTCAGTCCTAACACTTTTCCCTATaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     17113 193 -  1189296 -----ttcaaaa--cttaCTCATAAGCATATGGACCTTTTTCCCGAACATCCGGGTAAAGAGCTCTATTCATAATTCCAATTGTGTTTGTGTAGTCAAACACCCAGTATTGCATCGTTGAAATGTATTTTGAGTTAACCCAACTGTCAGTGAAAGAGTTCAACGTTCCATCGTCATTTAATCCAAGAACTTTTCCCtgaa---
i caeSp111.Scaffold626  C 0 I 9
s caePb3.Scfld02_0       3677441 196 +  4147112 -----TTAAAAA--CTTACTCATAAGCATATGGTCCTTTTTCTCGAACATCGGGATACAATGCTCTGTTCATTATACCAATAGTGTTTGTATAATCATATACCCAATATTGCATCGttgaaatgtattttgaaTTTACCCAACTGTCCGTGAATGAGTTAAGTGTTCCATCATCATTTAACCCAAGAACTTTaccctgaaaaa
i caePb3.Scfld02_0      I 25 I 28
s caeJap4.Scaffold18194   543695 201 +   823664 CATATAATTGAT--CTTACTCATAAGTATATGGTCCTCGTTCTTTCATATCTGGGTAGAGTGCTCTGTTCATAATTCCGATAGTGTTGGTGTAATCGTACACCCAATACTGCATAGTGGAAATATATTTACTGTTAACCCAACTATCCGCAAAAGAGTTCAACGTTCcgtctttattgagttcgagGATTTTTCTCTTAAACG
i caeJap4.Scaffold18194 C 0 C 0

a score=-7438.000000
s ce10.chrX              5400369 25 + 17718866 GTTTCTAGGCTTCATGACAATTCAC
s cb4.chrX              10749824 25 + 21540570 CTTTTCTCAAATCACAACAATCTGT
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2161180 25 -  4500979 aaaTACCATGTGGATAAAGATATGG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626     17315 23 -  1189296 tttcatcgAGAAGCtaaagaaaa--
i caeSp111.Scaffold626  I 9 C 0
s caeJap4.Scaffold18194   543896 10 +   823664 -------------Attaaattat--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3677637 28 +  4147112 I

a score=249349.000000
s ce10.chrX              5400394 380 + 17718866 TTATTCT-----------------CTTACGTCATTAATTTGATTATTGACAATGTTAGGGAACACATTAAGCACAATTACTAGTCCGGCAACCAGAAGAGCAGCTCCAATCAGGAATATAATTCCAGCCGACACCTGACATATACAGGATCTGCTGGCCA--TTGTACCCAGTTGTTCTGTAA----------AAA--------TAATTCGGGAGTTAGAAAACGAT-TAA-----AGACTATAAAAT-------GACACCGAGTGAACAACTTT---CCTCCAACCGTCAGGTTATCTTTG------------GCAAG--AAAAGAGTTAATAG---TCAGTCGATAGACTGCAG-TTTCTGACCGAACAACAGATAAGGCTACGCTCGCGTTGGGTTCTTCA-------TATCAATTGCCA------ACGGTGCT---------GATTGGAAAAA------AAATGCCGGAATCACG
s cb4.chrX              10749854 432 + 21540570 TAA---------------------CTCACGTCGTTAATTTGATTGTGAACAATGTTTGGGAAGACTCCAAGGACCATAACCAACCCTGCAACTAGAAGAAGGATGCCGACCACTAAAATAATTGCCGCCGACACCCGACATATGCATGATCTGGAGGCCA--TTTTACCCAGTT-ATCTGAAA-GTTTGGTTTAAAATACCAGATTATTTTGATGCTCTAGAAAATTGTGAATCGAAACctataaaacagaaaa-------acgagAGCAACTTTCTCCTCCTAACCGTCAGGTTATCTATGTGCTCGGTGGTGGAAAA--GAGGGAGTTTATAGCTTTCAGTCGATAGACTGCAGTTTTCTGACCGAACAACAGATAAGGCTACGCTCGCGTTGGTTTTCTCCCTCTTATTATCAATTGCCAACTGGGACAGTGTT-------ACGGGTGGAAGAA------AAATGCCGGAATCACG
i cb4.chrX              I 5 I 1549
s caeRem4.Crem_Contig0   2161207 419 -  4500979 TTT---------------------CATACGTCATTAATTTGATTGTTGACAATATTCGGGAACACTCCGAGAACAATGACAAGACCAGCAACTAGGAGAAGGGCACcgatcaaaaacagaataccAGCAGTTACCCGACAGATGCATGTTCTGCTGGTCA--TTTTACCCAGTTAATCTGAAA----------AGAATTC--GGTTATTcggaagtttgaaaatgtt-tgagttACAGActataaaacagaaaacgacAAGGTGAGAGCAAATTT---CTTCCAACCGGCAGGTTATCTATATGCTC-------GCGAG--AAAGGAGTTAATAG---TCAGTCGATAGACTGCAG-TTTCTGACCGAACAACAGATAAGGCTACGCTCGCGTTGGTTTCCTC--------TATCAATTGCCAACTGGGACGGTGCTGattggaaagagagaaagaaagagagaaatgccGGAATCACG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     17338 408 -  1189296 ------------------------ctcacatcaTTAATTTGGTTATTAACAATATTGGGGAAGACTCCAAGCACAATCACGAGACCAGCGACTAGAAGCAGAACACCAACTATAAATATGATTCCAGCCGTCACCCGACAAATACAGGTCCTGGTGGCCATGTTTAACCCAGTTAATCTGAAACAATCAT---GAAATAAT-CGTTATTCGGAAGTTTGAA----TT-TGAGTTGCAGActataaaacagaaaacgatGGGGTGAAAGCAATTTT---CCTCCAACCGTCAGGTTATCTATGTgct--------gaaag--aaagaagttaATAG---TCAGTCGATAGACTGCAG-TTTCTGACCGAACAACAGATAACGCTACGCTCGCGTTGGTTTCCACCCA-----TATCAATTGCCAACTGGGACGGTGCT---------GATTGGAG-AA------AAATGCCGGAATCACG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3677665 411 +  4147112 ttgtttttgaa-------------ctcacGTCGTTAATTTGATTATTAACTATATTAGGGAAGACACCAAGTACTATGACCAAACCGGCAACAAGTAACAGGACACCAACAACAAAGATAATACCAGCCGATACCCGGCATATACATATTCTGGTGGCCATATTTTACCCAGTTAATCTGAAA-ACTCAG---AGAA-------TTATTCgggagtttgaaaatgtt-tgagttGCAGACTATAAAACAGAAATCGACGGGGTGAGAGCAAT--------TCCAACCGGCAGGTTATCTGTGTGCA--------AGCAGGAAAAGAAGTTAATAG---TCAGTCGATAGACTGCAG-TTTCTGACCGAATAACAGATAACGCTACGCTCGCGTTGGTTTCCTC--------TATCAATTGCCAACTGGGACGGTGCT---------GATTGGCGAAA------AAATGCCGGAATCATG
i caePb3.Scfld02_0      I 28 C 0
s caeJap4.Scaffold18194   543906 417 +   823664 tcatttttcaaaatgaaaacgtGGCTCACGTCACGGATTTGGCCTTTGACATTGTTGGGGAGTACTCCAAGGACAATTACTAATCCGGCAATAAGTAGACCAGCTCCAATCAAAAATATGATTGCGGCTGTTACCCGACAAATGCATGATCTGTTGGCCA--TTTCACCCAAAAATTctgtaa------------------------ttcaaaaaaaataaaaataa-aaaattgtaggtaataaaataggaaaagacaa----aaagaaattttttaagttaaaaCGGCAGGTTATCTGTATGCTC-------GTAAG----AGGAGTTAATAG---TCACTCGATAGACTGCAA-CTTCTGACCAAACAAGAACTAACACTACGCTCGTATTGGTTTCTTATCATCAATTTTCAGCGACCAACTAGGACGGTTCT---------GTTTGTAG-AA------AAATGCCGGAATCACG
i caeJap4.Scaffold18194 C 0 C 0

a score=898.000000
s ce10.chrX              5400774 2 + 17718866 CT
s caeRem4.Crem_Contig0   2161626 2 -  4500979 CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     17746 2 -  1189296 CT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3678076 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   544323 2 +   823664 Tt
i caeJap4.Scaffold18194 C 0 I 5253
e cb4.chrX              10750286 1549 + 21540570 I

a score=1857.000000
s ce10.chrX              5400776 15 + 17718866 TGGTGCCTAGAATTT
s caeRem4.Crem_Contig0   2161628 15 -  4500979 GGGCgctcacatttt
i caeRem4.Crem_Contig0  C 0 I 7883
s caeSp111.Scaffold626     17748 15 -  1189296 CGGTGCCAACAGTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3678078 14 +  4147112 TGATGGCAA-ATTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I

a score=-862.000000
s ce10.chrX              5400791 40 + 17718866 CGGCAG-----------GAAACAATTTAAACAAATG-CAATAAAACACATCT
s caeSp111.Scaffold626     17763 32 -  1189296 TTTCGTTGATC------GGAATG--------------CAGGAAAAAACGTCT
i caeSp111.Scaffold626  C 0 I 5603
s caePb3.Scfld02_0       3678092 52 +  4147112 TCTCGGCGATCACAGTTGAAATAGTTTAATTATATATCAGTTGAACTCGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeRem4.Crem_Contig0   2161643 7883 -  4500979 I

a score=601.000000
s ce10.chrX              5400831 25 + 17718866 TAAAGTAGCCAAAGTGAAAAGAACA
s caePb3.Scfld02_0       3678144 23 +  4147112 TTAAATGG--AAAGTAAGGAGGGCA
i caePb3.Scfld02_0      C 0 I 13219
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     17795 5603 -  1189296 I
e caeRem4.Crem_Contig0   2161643 7883 -  4500979 I

a score=0.000000
s ce10.chrX              5400856 802 + 17718866  
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     17795 5603 -  1189296 I
e caeRem4.Crem_Contig0   2161643 7883 -  4500979 I

a score=337.000000
s ce10.chrX              5401658 7 + 17718866 TGGAGAC
s caeRem4.Crem_Contig0   2169526 7 -  4500979 TGGAACC
i caeRem4.Crem_Contig0  I 7883 C 0
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     17795 5603 -  1189296 I

a score=8572.000000
s ce10.chrX              5401665 284 + 17718866 GGTTTCCTCGACACCAAAAACCATTCTTCCATCAAGTTGTACGCAAGATTTTCTCTATTATCCTGAAGAAAAGCGATCGCATTCGTGCATTGTTTGTACTCTGCAATCAGTTGTCCTGCTCCGGTGTAGGCTTCTTTCATATGGCATTCTTTC----------AGATTTAAAGTTCCATCATCGTCC---TTCTAAACCA-CATTTTGTTT----------GAAGGAACTTTTTTTTTGAATTTACCTTTGCGTAGTAGATCAACTTGTTCATAACAAACTCAGCCGCATTTACATGTTGATCTGAAA
s caeRem4.Crem_Contig0   2169533 292 -  4500979 GGTCGTCTTGATTCCAAGAACCAAGCCTCCATTAACGCGTAAGAAGTGTTTTCTCTGAATGTGTACAAGAACGCAGCAAGATCAGTTGAAATTTTgtattgtttcaaaagttgtccGATAGCCATGTACCCTTCTCTTAAA----ATTTTCTCGTCAGAAGTAATGTTGATAGTTGC--TGCCATCT---GTAAAATGTAACTTTTCATTTAGCTGACTAGAATGGAAATGA-------AACTCACGTCTGAGAACACGAGAAGTTTGTTTCTCACAAATCTGACCGTATTGACAAATTGATCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     23398 287 -  1189296 GGCTTCTTTGATGCAAAGAACCATTCCTCCATCAAATCGAATTTCGCTTCGCCTTTGTTGACTTGAAGGAACGAAGTGACATTGGTAACATGTCGATATTCTTTTAGAAACTGTGCCATTGCAAAATACGTATCTCTCAtt----gttttctcatcatcaGTTAGAGGTAACATCTC--TGACATCTGAAGTCATATCTATTATTTCAT------------GATAGACGTTATCTT---ATCTTACATCTTCCAAGAGAATTAGTTTGTTGCGAACCATTGTAACTGCGTTGATGAATTGATCTACAA
i caeSp111.Scaffold626  I 5603 I 391
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I

a score=629.000000
s ce10.chrX              5401949 15 + 17718866 TTGTTTGAGTAAGTA
s caeRem4.Crem_Contig0   2169825 12 -  4500979 --GTTTGA-TAAGta
i caeRem4.Crem_Contig0  C 0 I 155
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=0.000000
s ce10.chrX              5401964 2904 + 17718866  
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     23685  391 -  1189296 I
e caeRem4.Crem_Contig0   2169837  155 -  4500979 I

a score=431.000000
s ce10.chrX              5404868 44 + 17718866 TAAAAAAAATTAATGTTCCTTGAATCCTACCCTCGAACC--------CTTTC
s caeRem4.Crem_Contig0   2169992 51 -  4500979 tgaaacaaattcat-ttcttattACCGTACCCGCATATCTCTCCTTACGTTC
i caeRem4.Crem_Contig0  I 155 C 0
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10750286 1549 + 21540570 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=26.000000
s ce10.chrX              5404912 12 + 17718866 -------ATAACAAAAGAT---
s cb4.chrX              10751835 15 + 21540570 -------ATAAAGAAATATTGA
i cb4.chrX              I 1549 C 0
s caeRem4.Crem_Contig0   2170043 22 -  4500979 ATAACCCGCAAAAAAGTATTTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3678167 13219 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=8048.000000
s ce10.chrX              5404924 130 + 17718866 AGTGTTAACACTTCGAATTTAGTATAGTCAACAGATTTTTCGTTCAATGTTTTCAAAAACATAAACAGTCTGAATGCCTGCAGACTGCGTTTAATGAGATCCTCGTAAATTTTCAACAGCTCAGTTTTGT
s cb4.chrX              10751850 103 + 21540570 AGGATCAAAGCTTCGAAATCCGAGTATCCATAAGATCTCTCATCCAGAACTGCTAGGAACATGAAATACTGACATAATCGTAAACCT----------------------CGTGCAACA-----ATTTTGT
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   2170065 130 -  4500979 AGCATCGCTAATTcgaattcacaaaattcttcAGAGGTCTCATCGAGACTACCCAAGTACATGAAATATTGGAACAGGCGTATACTTTTGTATATAAGGTCCTGATGAGCAGACAACAGGTCCATTTTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3691386 130 +  4147112 AGAGTAATCAGCTCGAATTCGTAAAAATCTTCAACTTCGTCTTCTATACTTGTGAGAAACATAAAGAAATGGAATAAGCGCTGACTTCTCTTGATATGATTGTGGAATGATTTCAATAGCCTAGTTTTAA
i caePb3.Scfld02_0      I 13219 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=-1277.000000
s ce10.chrX              5405054 23 + 17718866 --------GTTCCAACGCAGGACCAATATAT
s caeRem4.Crem_Contig0   2170195 23 -  4500979 --CCATAAGCTCT------GCTCCGACGTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3691516 23 +  4147112 CCTCTAAAGTTCT--------TCCCAGGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10751953 21 + 21540570 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=-4490.000000
s ce10.chrX              5405077 54 + 17718866 TTCTGTAATTAGTTTTT-----ATTCCAGATTTAGTTT--TCAGATTAATCGCTAAATAAA
s cb4.chrX              10751974 49 + 21540570 TTTTGGAACTGAGTTCTGACCCATAGTAGTCCTGCAATACACAAATAAA------------
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   2170218 47 -  4500979 ATCTGAAATCAAATAATAAACAGTTGCAaccaaatatt--tcaaacaaa------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3691539 44 +  4147112 GTCTGAAAATAACTGATTGGAGACACCACATTCACGTT--TTGAAC---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     23685 391 -  1189296 I

a score=-500.000000
s ce10.chrX              5405131 53 + 17718866 ------------------AAGATTACCTCGCTAATTTCATCAACTCTTGTTTCCAAATACCTATCTCTCAA
s cb4.chrX              10752023 71 + 21540570 TAGTAAAACTTGATTCAGTCACATACCCGTTGAATGTCATCGACTCTTTGCTCGAAGAACAAGTTTCGTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2170265 46 -  4500979 cAGTAGTAC---ACTC-----CATA-----------------GTTCTTGTTTCAAAGTACTGATCTCTCAA
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626     24076 53 -  1189296 ------------------aaaccTACAGCGGTGACTTCTTTGActctttctttgaaataaagTTCTCTCAA
i caeSp111.Scaffold626  I 391 C 0
s caePb3.Scfld02_0       3691583 49 +  4147112 ----------------------TCACGTTTTTAATATCTTCAGTCCTTTCGATAAAGTATCTTTCTCTCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-5870.000000
s ce10.chrX              5405184 19 + 17718866 ATTGATTCGAAGGTAAAAT-------------
s cb4.chrX              10752094 19 + 21540570 -----------AGTGATCTTGTGC--TCAAAC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     24129 19 -  1189296 ----------TCGGATTCTCTCATAATCG---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3691632 19 +  4147112 ----------AAACAATCTCATGCTATCG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeRem4.Crem_Contig0   2170311 19 -  4500979 I

a score=45966.000000
s ce10.chrX              5405203 296 + 17718866 TTTGAGTTCTCAACATAA-TATTCCAAGTCTTCGTCCAATTGTTTAATTTCAGGTGGAAGC-TTTCT--CTCTTCTTTTCTAAGCATATCCACTGCAGTTTGCGCTAGACGTCGGTAAATTTTATTCCGATCACTGGCATCTATTTTTTCCTGTCGGATCTTCATTTGTTCTTGGCGTAACTCATATGCTTTGTCAGCGTCTAATTTTTTCTTTTTCTTAATTGCTTCAATTTCTTCTTCAGTGATTTTTTGAGCTCTGTTTGCCTTTTTTG---CTTTTTTTGCCGTTTTCCCACGTTTTTT
s cb4.chrX              10752113 290 + 21540570 TTCACAGAATTGACGTAATAGTCCATGAATCCT-TCGACTTCTTGCACTTCCACTGGCAGC----GG--ATCTCCTTGAGCTCTCATCCCAAGCGCAGTGTGCACCAATTGTCGATAGCACTTTTGACGGTGCATCAGTTCCACTTGGTTCATATGGGCACGTCTCTCACCTTCAATTCTCTCAAACTCTTTATCAGCTTCAGCCTTTTTCTGCTTTCTGATTGCTTCAAtttcctcttgtgtgacttttggacctttgttgcattttttgg---gcttttttcctttcttt---cctttttt
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2170330 296 -  4500979 TTAGTTTTGTCTACGTAA-ATTTCAAGATCAGTATCCAGTTGTTTAATTTCCTTAGGGAGTTCTAGGCCATCTGTTTTGATAATCAGC---AGAGCCGTTTTAACaacttttctgaataatttgtGCCGATCACTTGTATCTACCTTCTCCAGATGGCAttttctctcggagtcttttttttcaaactctctatctttttcttcttttttcttcttcttaattGCCTCAATTTCTTCAACTGTCAtttttggtccggttttgggtttcttgc---tcttttttccttttttggaacgtttttt
i caeRem4.Crem_Contig0  I 19 I 2359
s caeSp111.Scaffold626     24148 295 -  1189296 GTTGTAATGTTAACATGA-AACTCCAAATTAGAATTTAATTGTTCAATGATGATAGGCAAA-TCAAT--TCCATCCGTCGCTTCCATTTCCAATGCAGTCTCGGCTGCCTTTCTATACATTTTATGGCGTTCACTCGCTTCTATCTTTGCTAGTCGTGCTTTGTTCTCTTCATCCCGTAACTTGAACGCTTtatctgcttcttcttt-ttcatcttctttatGGCTTCCACCTCTTCCATTGTGATTTTAGGCGcgtttttattctttttct---gcttttttcctttctttgctttcttttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3691651 299 +  4147112 TCTGTTGAGGTAATGAAA-AGATCGAGACTTTCATCAAACTGTTCGATTAGAGCTGGAACT-CTTgt--atcttcattttcttccatttggATTGCAGTTTCCGCCACTCTCCGCAATACtttgtttttatcagttgCTGCGACTTTTGCCAGATGTTCTTGCGTTTTTTGGTATTGTAAATTGAAAGCTTTGTcggcttcttctttcttcttctttctaattgcttcaacttcttccattgtgacctttggtccattcttctgcttctttccAGGTTTTTTGCCTTTCTTCCCACGCTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=1017.000000
s ce10.chrX              5405499 3 + 17718866 CTT
s cb4.chrX              10752406 3 + 21540570 ctt
i cb4.chrX              I 3 I 2519
s caeSp111.Scaffold626     24443 3 -  1189296 gtt
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3691950 3 +  4147112 CTT
i caePb3.Scfld02_0      C 0 I 2881
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeRem4.Crem_Contig0   2170626 2359 -  4500979 I

a score=398.000000
s ce10.chrX              5405502 8 + 17718866 GCCTCTAG
s caeSp111.Scaffold626     24447 8 -  1189296 gCTCCTGG
i caeSp111.Scaffold626  I 1 I 2151
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10752409 2519 + 21540570 I
e caeRem4.Crem_Contig0   2170626 2359 -  4500979 I

a score=0.000000
s ce10.chrX              5405510 1070 + 17718866  
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10752409 2519 + 21540570 I
e caeSp111.Scaffold626     24455 2151 -  1189296 I
e caeRem4.Crem_Contig0   2170626 2359 -  4500979 I

a score=529.000000
s ce10.chrX              5406580 115 + 17718866 AAGTGTTGTAA-------CAAAATAAAGCAAGTGCAATTGTG-----------GGGAATGTGTAGAATAGGCAAATG-ATAAGTAGAACAGTGTCGAATTAGTCAACAACAACAATAACACCACTCATTGCAAT
s caeRem4.Crem_Contig0   2172985 131 -  4500979 aaatgttgaaaatggaaGCAAAATTAA---AGTGCAGATGTATAATTGGTTGAGTGCATGCATTGTATAATGAGATGTATAAGTAAAATACTGTAGGGTCAATCTGTGTCGTTGCGGATCTGATTCAGTCGGCT
i caeRem4.Crem_Contig0  I 2359 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10752409 2519 + 21540570 I
e caeSp111.Scaffold626     24455 2151 -  1189296 I

a score=201.000000
s ce10.chrX              5406695 3 + 17718866 CGT
s cb4.chrX              10754928 3 + 21540570 CGT
i cb4.chrX              I 2519 C 0
s caeRem4.Crem_Contig0   2173116 3 -  4500979 AGC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     24455 2151 -  1189296 I

a score=45347.000000
s ce10.chrX              5406698 248 + 17718866 GGTAGTAATGAGGCTGCTTTTACGTCGTAGGGCTCCCCGTCTGTCTGGCAAGACATATCTTGTACTTCTGGTTTGTCATACTCTTCTTCC---TCATCACTTTCATTGGTATTCCTCTTCTCACC----------CCGATACCCACTATTTTCCGT---TTGCGTCACGGTCAGCAAGTAGTCTTCCTCCATGACGAAAAACTCGGTGTTAAGACGCGTTCGTAGATACGACGTGATTCCCATG-AAATCGACGGCTTCATCATA
s cb4.chrX              10754931 263 + 21540570 GGCAAAAACGAGGCTGCTCTCAAATCGTAGGGTTCTCCGTCTGTCTGACAAGACATGTCCTGTACCTCGGGTTGTTCATAATCTTCATCGCACTCATCCAACACAAT-TTCCGGCTCCTCTTTGACACAACACTTCTGAGACTCACAGTTTTCCATTGGCTCAGTGGCGACCATCAACGAGTCCTCCTCACATAAGAAGAACTCTGTCTCAGTCCGTGTGCGTAGATAGGAAGTGATACCAATGAATGTGAATA-CTTCATCAAA
i cb4.chrX              C 0 I 123
s caeRem4.Crem_Contig0   2173119 233 -  4500979 GGCAGCATCGAAGCAGCTCTGACGTCGTATGTCTCTCCGTCTGTCTGGCAACACATATCGTGTACTTCAGGTTTTTCAAACTCTTCTTCG---TCATCTG--------TTTCATCCCC-----------------CTGATACCCACATATTTCACT---CTCCGTGACCGTCAGCAAGTAGTCCTCTTCCATGATGAATAGCTCGGTGTCCATACGTGTTCTCAGATAAGATGTCAATCCCATG-ATATCAACAGCCTCAGTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     26606 242 -  1189296 GGCAGATAAGACGCGGCTCGAACATCATACGGATCCCCTTCCGTCTGACAAGACATATCTTGTACCTTAA------CACGCTCCCTCTCA---TCGTCCGATTCATTGTCTCGCCTGTTCTCTCC----------CAGATGCCCACTATTATCACT---TTCTGTGACCGTCAGCAAGTAGTCCTCTTCGACGACAAAAAATTCGGTTTTTCGTCGCGTATGCAAGTAAGAGGTGACTCCCATA-AAATTAACTGCCTCATTATA
i caeSp111.Scaffold626  I 2151 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-3556.000000
s ce10.chrX              5406946 122 + 17718866 TAAGATTCGATAGTTTTTGAGAATCAGCTTAGCCCTCTCAACTGAATCCGTCTTTTCAGTGAT---CTGTAAATTAACAGTAAACTGAGAGATACGAGCTTCTAATTCGAGTGCTCACATTAGAT
s caeRem4.Crem_Contig0   2173352 121 -  4500979 CAACATTTTATAGTTGGTTAGAATTTCGTTGCTTTTCTCAATC-ATTTCTGATGTTTTACGTac--ctggaaataagaaaaatgagaagatggGAAAGCGTTGAATAACAA-ACTtacttttccc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     26848  69 -  1189296 TAATTTCTTATAGTTCTTAAGAATCTCCTTCGTTCTCTTTGTC---TCAGGATCATCAACATTCgtctgaaa-----------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755194 123 + 21540570 I

a score=-232.000000
s ce10.chrX              5407068 57 + 17718866 ATTCTATTCAGGATAGACTCGGAGAATTGTAACGCCTTTATCATGCAATCTGAAAAT
s cb4.chrX              10755317 56 + 21540570 ATTCTTT-CAGGATTTTCGTGAAAAACTTTGATGATATCTCCATGGCAtctaaaaaa
i cb4.chrX              I 123 C 0
s caeRem4.Crem_Contig0   2173473 57 -  4500979 attttctgcAGCAACGAATCAGCAAACTGGCAAGCTTTTTCCatagtttctgaaaat
i caeRem4.Crem_Contig0  C 0 I 137
s caeSp111.Scaffold626     26917 23 -  1189296 ---------agaa------taaaaaa-------------------gaatcagaaaag
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-6662.000000
s ce10.chrX              5407125 141 + 17718866 ------ATTGCTTAGATTGTAGTAACCATCTCAA---GAAAC--------AACCTGCAATTTTGGGCTTCCTTTCCTGGCAAAACAACTCAAA-----AGCTTTTTCAATCACAATATTGATGGGCGACTCGGGATCTGTAACATTAATCGATTTTATCAATA-
s cb4.chrX              10755373 148 + 21540570 -----aagagttttattCTTC----TCTTCTGAACCTGAATTATTATTCAAACCTGAAGTATTCagctttttcgttttttgaaacgcGTCAAA-----CGCTTTTTGTATGACTTCATGTTCTGGGGATATTGGCTCTGTAAGA-TGATTAATTATAATATTA-
i cb4.chrX              C 0 I 760
s caeSp111.Scaffold626     26940  84 -  1189296 aagaaaaaagtctcACTTTTTCGAGTCTTCTGA----GAATC---------------------------------------AAATCCGCAAAATTTGTCGCTTTCAGcattatttc-------------------------------------tgaaatagtAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeRem4.Crem_Contig0   2173530 137 -  4500979 I

a score=0.000000
s ce10.chrX              5407266 4 + 17718866 AATT
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755521 760 + 21540570 I
e caeSp111.Scaffold626     27024 0 -  1189296 C
e caeRem4.Crem_Contig0   2173530 137 -  4500979 I

a score=-2729.000000
s ce10.chrX              5407270 76 + 17718866 TCATATACATGT-------------TCTATTGAAGATGTAGAAACACAGGTTGGAGAGTTTTCTTTGCAAATTTGAAAGATTTTTGAGA-
s caeRem4.Crem_Contig0   2173667 55 -  4500979 GTGAAAACATgc-------------tttagtga----------aaaaaaactgga-----------acgTTTCT-TTAAAATCTGCGCAG
i caeRem4.Crem_Contig0  I 137 C 0
s caeSp111.Scaffold626     27024 74 -  1189296 ----ACACATGAATATTTTAATTCGTCCAGTAA---------CAAACGGATTGGA--GTCATCTTTGCGTTTTTGCGAAAGTCCTGGTA-
i caeSp111.Scaffold626  C 0 I 121
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755521 760 + 21540570 I

a score=430.000000
s ce10.chrX              5407346 31 + 17718866 TAAAAC--AACCTGCAAATGAAAAAAGAAAAAT
s caeRem4.Crem_Contig0   2173722 33 -  4500979 GAAAGTGGAATTtcggaaagagagaagagaagt
i caeRem4.Crem_Contig0  C 0 I 92
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755521 760 + 21540570 I
e caeSp111.Scaffold626     27098 121 -  1189296 I

a score=0.000000
s ce10.chrX              5407377 127 + 17718866 AATTGCTCCCGGTGAGGCTCGAACTCACGACCTTCAGATTATGAGACTGACGCGCTGCCTACTGCGCTACGGAAGCTCTGTATTGCCCTGTCGACAACAAAATAGAGGAGGGCGCGCATGTACACCC
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755521 760 + 21540570 I
e caeSp111.Scaffold626     27098 121 -  1189296 I
e caeRem4.Crem_Contig0   2173755  92 -  4500979 I

a score=455.000000
s ce10.chrX              5407504 33 + 17718866 GACAACCTCACACTAGAAAAA---ATAATGTGATTA
s caeRem4.Crem_Contig0   2173847 36 -  4500979 GATTAGGTCAAAATAGAGAAGCATACAAAGTAATAA
i caeRem4.Crem_Contig0  I 92 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10755521 760 + 21540570 I
e caeSp111.Scaffold626     27098 121 -  1189296 I

a score=1893.000000
s ce10.chrX              5407537 42 + 17718866 --CAAGCTCACCTTTGTCTATATTTATGCTTTTCCACGCTAGAT
s cb4.chrX              10756281 36 + 21540570 --CAAACTTACTTCCACGAAAACTTGAACTT------GTCATAT
i cb4.chrX              I 760 C 0
s caeRem4.Crem_Contig0   2173883 44 -  4500979 AAAAGACTCACCTTCATTCACATCTAAACTTTTACTGGTGAAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     27098 121 -  1189296 I

a score=2262.000000
s ce10.chrX              5407579 51 + 17718866 ATTCCATCAGCTCATCTAATTTTATCGTATTACCAATTTCAATTAGGGTAT---
s cb4.chrX              10756317 51 + 21540570 AGTCCAAAAGCTCTTTTAATTGGAACttgctctctttttcttcaagcGTGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2173927 48 -  4500979 AATCCAGAAGTTCTTCCAGTCTGAAATCCTTGGTGTTTTCCGTGAG---AT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     27219 51 -  1189296 ATTCCAAAAGTTCCTCTATCTTGAAATCGTTATTTTCAACCATTAA---CTGAA
i caeSp111.Scaffold626  I 121 C 0
e caePb3.Scfld02_0       3691953 2881 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-3606.000000
s ce10.chrX              5407630 339 + 17718866 AGCTCACGAAAACTAGGAATATGTTCATTTTCTCAACGGCAGTGATGCGGACTCGATATTTCTCCAACATTTTGTATTTGCTTGTATTAATTTCCA---TACTTGTTTCTTCTGCT--------------AGTTCAGATATACGCTTGTCAAGGAAAAGTTT--------CGAACCGATTACTCGATCTGCAATAT------TGTTTTGTTTA----CTCAAACGATTTTCAA----------ACTCACATGCTATA------TCTTTTTCTCTGATGTGTTCGCTTAATCTGTCCCGGCTTTTGAGCATTTCTTTA-ATTCTCGTTGCTGAAA--------TT--AGCAATACAAGTATTAATTAAA-GAAATATATACTCACGATCTG-------GTCCATAACCGC
s cb4.chrX              10756368 353 + 21540570 GACTAGTGAATGCAAGAAACAAATCAGTTATTTCCGAAGCTGATATGcgcttttgaaacttttccaacatttcaaaCTTGGTTTTGTTGATG-----------------TGTTGCTGGTTTGCAACAATCAGTTCAGTCAAACGCAAATCGATGTAAATCTT--------TGAGCTGATGACTCGATCTGGAAAAGAGCTAAGAATAGACTGAACCGGTAAAC--TTATTTA-----------ACTCACAAGCTACA------TTTTTCTCTTGAAGATGTTGCTCGAGCCGTTCTTTGGTGGCCAGTATCATTTTC-ACAcgctcatctgaaa---------a--aaaattatactgaTTGCCCCGTATCACCAGCTACTCACTATTTCCCGCGTTGTTCCGATCCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2173975 350 -  4500979 CGCTCATGAAGATCAGAAATGTGTTCATTCTATCCATCGTTTTTAGACGTCCTTTGTACGTATGCAATATCTTGTGcttgtttttgttgatttcca---TTGACCTATCTGTTGCT--------------AGTTCCATTAGACGCTTGTCCATGTAAATCTT--------CGACCCGATCATCAGATCTAAATAAT-TCTAagattatttttaatt-ataagT--ATGTTTC-----------ACTCACATCGAAGC------GGTTTTTCTTTGACATGAGCGACTAATCTTTCTTTGCTTTCGAGCATGTCTTGA-ACTTTGCTAGCTATAATTCATCCATT--AAAGCTATA---ATTAATCCAT-TAAACAAATATCAACAACTTAC------GGTCACATCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     27270 347 -  1189296 CACTGACAAAACACAGGAAAGTATTTATCTCCTGCACCATATCAATTCGGTTTTTGTACTTCTGCAAAGTGTTGTACTTGGAGATATTGATCTCTA---ATCTCAGATCTTCCGCA--------------ATCTGCGGTAACCGCTTTTCGAAATAGACTGT--------TGAACTGATCATTctaa-----------ctgaaattttattta----cttAGC--ATTTTTAGAGATGTATTTACTCACGAAATAGA------GAATTCTCAAGCACGTGGGCAGCCAATCTTTCTTTGCTTTCCAGCATCTCATTG-ATTCTCTCTGCT-AAAATGATAATGT--AAAGAAAGTTTTATGATTTCTT-CAAGTCA--ACTTACATTCTG-------GATCATACTTGT
i caeSp111.Scaffold626  C 0 I 43
s caePb3.Scfld02_0       3694834 357 +  4147112 aactaataaaaaccATAAATTTGGATATGGTTTCCAATTGGGCAATTCGtcccagatttttttccaaaattccgaTCTTCTGATTATTGATATCCAtgtccttcttttcttcagaa--------------atctGTTTCATTCGACAATCGATGTACAGTTTTGCCGCTATGAGTCGATCTGTTGAA--AAACTCT-TCTAAAACTCTGTTT-----CTCAA---ATATTCAGA---------ACTCACAAGTTAGATCGGTGGAGTT------TACGTACGCTTCCAGTCtctctttgattttca-taGCTCTTTGTAGTCgttcggctgaaaattttggttttcagggaaacactcat--tttttt-taaagaa--aaataccCTCTAT------GGTagtttttat
i caePb3.Scfld02_0      I 2881 I 3
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-3051.000000
s ce10.chrX              5407969 49 + 17718866 -------------GCCGAGCTCGTTTTTG----AGCATCTCGCTCT--CGTCGTATATTATCAATATC
s cb4.chrX              10756721 60 + 21540570 ACGATCCATGCTTTTCCGATGTTCCATC------CTTTCTCGTTCt--tgtcgaatttttttcatttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2174325 55 -  4500979 TCTG-------TTTTCGTGTGAGCAGTTG----GCTTTCTCGCTCC--CGTTtgattctttgaatttc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3695194 57 +  4147112 -----------ttttggcTTGTTTTTTGGCCTCATTTCCTTGTATTGACGACGAATTTCCTCATTAtc
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     27617 43 -  1189296 I

a score=48784.000000
s ce10.chrX              5408018 185 + 17718866 CCGTTTTCGCTTCTCAAAATCCAATTGATGCTTAACTTCTCTTTCTTTTTTCATTGACATAA--TTCTCA--GATCGTGTTCGATTCTTTTCTGTTCCTTCACTTTTTTCTCTTCTTCCTTAGCTTGCTCGGCACACAATCGTGCTTTTTCTCGAACTCTCTGCCGTCGCTTAGCTCGCTGTTCTGTTT
s cb4.chrX              10756781 173 + 21540570 caattgtttttgcttgaactctctttcgtgacggtcttctttttcttttttctgcttttgaa--gatttg--tttcatattcgatacgtttcagctctttgacttttttctcttcctccttatttt------------gtttaattttatcttgctttctctGACGACGTTTGgctcttttttctgctt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2174380 185 -  4500979 tgcCTTCTTCTGTTCATATTCTAAACGTTGCTTgacctctttttctttctt----ttctgaaagaatttggAGTTCATGCTCAATTCTCTTCTGTTCTTTtagcttcttctcctcttccttgTTTTGTTTCGCAGaaagtttcactttttcatgaaCTCGTTGACGACGTTTTGCACGTTTTTCCGCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     27660 182 -  1189296 ---ctgctttttctcgAACTCCTCTCGCTGTTTTGCTTCCTTCTCCTGTTTCTCGGTTTGAA--TTCTCA--GTTCCTTTTCCATATTCTTCAATCTCCTCgcctctttctctttgtttttatgCTCTTTTGCACACAGTTTAGCCTTTTCTTGAACTCTTTGACGACGTTTAGCCCGTTTCTCCGctt
i caeSp111.Scaffold626  I 43 I 1750
s caePb3.Scfld02_0       3695251 185 +  4147112 tctctgcctctgttcatattcttgctttctcttcaattctttttcctttttctccgcttcta--ttctct--gttcatgctctacccttttttGCTCCctaattcttctttcttcttcttgtttttgctcagcattgagtttcgcttgttctttttttctttggcgTCGTTTAGCGCGTTTCTCCGCTT
i caePb3.Scfld02_0      C 0 I 30
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-6405.000000
s ce10.chrX              5408203 80 + 17718866 TGGATAGTTCCTTTCTTAAATGAAAATTTAGAAAAATTTGGAATT-------TTTCTTTCAAATTTTGTACAAAGTT---------TGCTCACTCG
s cb4.chrX              10756954 63 + 21540570 -taATGTCTTCATCTCTG-----TAAAGT------ATTTTAATTC-------TAGTTTGGA-----CTATATTTGTT---------CAACTACTCA
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2174565 75 -  4500979 -TGATGTCATCAttactaaaatttaaaat----aaattttacttt-------ttttttggaaattccaaCCTGCGCT---------CGTTTACTTG
i caeRem4.Crem_Contig0  C 0 I 1739
s caePb3.Scfld02_0       3695466 83 +  4147112 tgtatatggttttttttaaacatcgACTT------ACTTGGATTCAGAAGTTTCTTTCTCA-----TTGATTGCGTTTCGAGATGATGCTTCCT--
i caePb3.Scfld02_0      I 30 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I

a score=-470.000000
s ce10.chrX              5408283 45 + 17718866 ------------TTTCCAG----CAATGCTTCCATTAAAA-TTGCCCATTTTTATGGGTTCA
s cb4.chrX              10757021 60 + 21540570 AGTTTAGTAACTTCATTAGTT--GAAGCCGCTTTTTCACATATTTCTGTTTTTACTGGTTCA
i cb4.chrX              I 4 I 600
s caePb3.Scfld02_0       3695549 47 +  4147112 ------------TCTCTGGCTTGGAAGACTTCTTTTCA---GCGTCCACATTTGACGGTTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I
e caeRem4.Crem_Contig0   2174640 1739 -  4500979 I

a score=-3423.000000
s ce10.chrX              5408328 480 + 17718866  
s caePb3.Scfld02_0       3695596 523 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10757081 600 + 21540570 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I
e caeRem4.Crem_Contig0   2174640 1739 -  4500979 I

a score=6308.000000
s ce10.chrX              5408808 70 + 17718866 GCTGTTGATTCGTCCGTTTATCTGCAAGTAACTTTTCTGCTCGTTCCGCTGCTCGTTGCTCCCAAACATT
s cb4.chrX              10757681 70 + 21540570 GCTGTTGCTGCAGTTGTCTCTCAGCAACAAGTTTCTCTTTACGCTCTTGAGCCCTCTGCTCCCAAATGTT
i cb4.chrX              I 600 I 4929
s caePb3.Scfld02_0       3696119 70 +  4147112 GAttctccttgatttttttctctgccatCAACTGTTCCTCCCGTTCCGCAGCTTTCTGCTCCCAGATACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I
e caeRem4.Crem_Contig0   2174640 1739 -  4500979 I

a score=359.000000
s ce10.chrX              5408878 6 + 17718866 TCCATG
s caePb3.Scfld02_0       3696189 6 +  4147112 ACCATG
i caePb3.Scfld02_0      C 0 I 1268
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10757751 4929 + 21540570 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I
e caeRem4.Crem_Contig0   2174640 1739 -  4500979 I

a score=0.000000
s ce10.chrX              5408884 1048 + 17718866  
e caePb3.Scfld02_0       3696195 1268 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10757751 4929 + 21540570 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I
e caeRem4.Crem_Contig0   2174640 1739 -  4500979 I

a score=190.000000
s ce10.chrX              5409932  89 + 17718866 TTACATACCCAATCATAATG--GGAATTC----------TTTTCATCGCAACTCTCTTCTGAATC--AATAATTTCGAAAAAATA----GGAACATTGCAGTAGCTC
s caeRem4.Crem_Contig0   2176379 107 -  4500979 TTACACATCCACTCGTAATGTCGTAACTTATTCTCTCCGTTTTCATTGACATCATCCGTTTTATctggataaaaatgaaaataaactttaaaatgTTCAATCAATTA
i caeRem4.Crem_Contig0  I 1739 C 0
e caePb3.Scfld02_0       3696195 1268 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10757751 4929 + 21540570 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I

a score=-1241.000000
s ce10.chrX              5410021 38 + 17718866 ACATACTTTGTTCACTGTCGCCAGCACGCA-AATTCAAA--
s caeRem4.Crem_Contig0   2176486 38 -  4500979 ACTTACAGGGTTCTACTTCGTTATCAATCA-AGCTCA-AT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3697463 38 +  4147112 ACATAC---GTTCCGATTCATCGGCAGTAGCAGCACACATT
i caePb3.Scfld02_0      I 1268 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I
e cb4.chrX              10757751 4929 + 21540570 I
e caeSp111.Scaffold626     27842 1750 -  1189296 I

a score=21339.000000
s ce10.chrX              5410059 60 + 17718866 TCATCAATCTCCTCTGCCGTCAGTCTTGACACGTCTCGATGTTTTGTCCAACTGAAATGT
s cb4.chrX              10762680 57 + 21540570 TCTTGGATCTCCTTCTCGGTTAGTTCTGACACGTCTCGATGTTTGGCCCAGCTGTAA---
i cb4.chrX              I 4929 C 0
s caeRem4.Crem_Contig0   2176524 60 -  4500979 TCATCTTTCTCTAGCTCCGATAGCTCTTCTACATCTCGAAGCTTTGACCAGCTGGAATAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29592 60 -  1189296 tcttccatttcctctTTCGTGAGCTCTGCCACATCTCTATCTTTTGCCCAACTAAAACAC
i caeSp111.Scaffold626  I 1750 C 0
s caePb3.Scfld02_0       3697501 60 +  4147112 TtgtccttctcttcctttgtCAATTCCGCAACGTCTCGAAGTTTTGTCCACCTGAAATGT
i caePb3.Scfld02_0      C 0 I 201
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=-5404.000000
s ce10.chrX              5410119 45 + 17718866 GCGTTTTATAGCTTTAAC----AAATGACGATATAGTTTCAA---------------ACCTTTG
s cb4.chrX              10762737 42 + 21540570 ----------------------ATCTCAAGTTATCACCCGATGAGCGGCGTCGTATCACCTGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2176584 49 -  4500979 GTCATTCACTTACTTATATATTATTTTGAGTCATTAAAAAAT---------------ACctttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29652 43 -  1189296 -ATCTCcgtttattcaa-----attttgagctAATGTTTCCC---------------ACCTATg
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3697561 201 +  4147112 I
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=2300.000000
s ce10.chrX              5410164 6 + 17718866 ATTCGA
s cb4.chrX              10762779 6 + 21540570 TTTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2176633 6 -  4500979 ctttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29695 6 -  1189296 gttaga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3697762 6 +  4147112 ATTAGA
i caePb3.Scfld02_0      I 201 C 0
e caeJap4.Scaffold18194   544325 5253 +   823664 I

a score=31654.000000
s ce10.chrX              5410170 149 + 17718866 AAAGAAATTGTGATGTTCGAACTTTTCGATGTTATTCTCAGACGCGAGAAGCACATTGAGGAAAAAGTTTTCATTGTTCCTGTTCACTGATTTTGCTAATGTTAACCAATGTGTTTGACTCTGAAA--AAT------------AACAATTTTGT----CCTTTTAAT
s cb4.chrX              10762785 154 + 21540570 TCCAAAGTTCTCCTTCTCAAACTTTGCTATTTCCTCTGGCGAAGCTGATACAACATCCAGGAAGAAGTTTTCATTGTTTCTATTCACAACCTTTGC-AATTAAAACCCAGTCAAGTag------at--actgaaaaaatatgttgtagattttt----ttcatactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2176639 160 -  4500979 gaaaaagttcaactgttcaaatttttcgagatcCTCATTTGAAGCCGAAAGTGCATCGAGgaaaaagttttcactttttccgttAACATTTTTTGCTAGTGACAACCAAATTGATTGGCTCTGAAT--ATTACAATTACAAG-TATAAAATAAT----ATTATAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29701 153 -  1189296 gaaaaaattctcattcTCAAATTTCTCGATATCTTCATCTGTACCAGTTAGAGcgtcgagaaaaaagttttcgttGTGTTGATTCACTGATTTAGCCAATGAGAGCCATTTAGTTTGACTCTAAATGCA--------------AACAAAATAATTGCATTgattatg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3697768 147 +  4147112 GAGAAAGTTATGCCTTTCGAACTCCTTGATGTCTTCATCTGTAGCGAAAATCGCGTCAAGCAGGAAGTTCTCACTATCCACGTTTACGGCTTTAGCCACTGCCGCCCAATTAGTATGACACTAAAT--A--------------TACAGTATTAT----CCGAGCgtg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   549578 150 +   823664 AAAGAAATTGACTTTCTCAAATTTCTCAATGTCCTCATCAGAAGCCAGAAGAGCATCCAAAAAGAAATCCTCGTTTTGATCTGACACTAATTTGGCGACTCTTTTCCAGCCGTCTCTACccttaaa--ataa-----------aataatgtttt----ttttttaat
i caeJap4.Scaffold18194 I 5253 I 247

a score=-2188.000000
s ce10.chrX              5410319 9 + 17718866 TAAATATTC
s cb4.chrX              10762939 3 + 21540570 tag------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2176799 4 -  4500979 CAGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29854 4 -  1189296 aaga-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3697915 4 +  4147112 aaga-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   549728 247 +   823664 I

a score=30434.000000
s ce10.chrX              5410328  98 + 17718866 AAG--------CCTACCTTTTCAATATGTTTGATAGCATGCTTGAGTTTATATATTTTCAACTTTTTCTTTTTAATGATGTCTGCTATTCGTTTTCCAACTTCGTC
s cb4.chrX              10762942  98 + 21540570 GTA--------CTAACCTCTTCTAGTAATTTTAGCCTCCGCTTCAGCTCATGGATCTCTGATTTtctgcttttcaaaatttcagctatcAGCTCTCCAACCTCgtc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2176803  98 -  4500979 AAA--------CTTACTTGCtctattttctgaatataaCGTTTCAATTCTCCTATTTTTAACTTCTTGTCTCTCACAATGTCAGCGATTCGTTGGCCAACCTCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29858  98 -  1189296 aaa--------gataCCTGTTCAATTTTCGAGATGCAACGTTTCAATTCGACTATTTgtgccttttttcttttcacaacTTCACCAATTCTCTTACCGACTTCATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3697919 106 +  4147112 aaactttgaagtatACCTGTTCCATTTGCTTtatccatttcttcatttctgcaatttgctccctcttctccttcattaTTTGAGCAATGCGCTGGCCGACCTCTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   549975  98 +   823664 aaa--------ctaactcTCTCCAATTGTTTAATTTCCGCCTGCAAAGTGTGTATCTGTGCACTCTTCTTTTTGAGAATTTCCGCTACACGCATGCCAATCTCGTC
i caeJap4.Scaffold18194 I 247 C 0

a score=2919.000000
s ce10.chrX              5410426 5 + 17718866 TGAAA
s cb4.chrX              10763040 5 + 21540570 tgaaa
i cb4.chrX              C 0 I 380
s caeRem4.Crem_Contig0   2176901 5 -  4500979 TGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29956 5 -  1189296 TAGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3698025 5 +  4147112 TGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   550073 0 +   823664 C

a score=-2413.000000
s ce10.chrX              5410431 15 + 17718866 GCAAAATGTTAG-----TGA----
s caeRem4.Crem_Contig0   2176906 17 -  4500979 --GAACACATTA-----TAAGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     29961 15 -  1189296 AGAAAGGAATAA-----TAA----
i caeSp111.Scaffold626  C 0 I 262
s caePb3.Scfld02_0       3698030 20 +  4147112 CCCAAAACATAAGTTAGTGA----
i caePb3.Scfld02_0      C 0 I 822
e caeJap4.Scaffold18194   550073  0 +   823664 C
e cb4.chrX              10763045 380 + 21540570 I

a score=402.000000
s ce10.chrX              5410446 18 + 17718866 AAAGACGAAAAAGAAGAA
s caeRem4.Crem_Contig0   2176923 18 -  4500979 GAAAgtgaacatcaaaaa
i caeRem4.Crem_Contig0  C 0 I 290
e caePb3.Scfld02_0       3698050 822 +  4147112 I
e caeJap4.Scaffold18194   550073  0 +   823664 C
e cb4.chrX              10763045 380 + 21540570 I
e caeSp111.Scaffold626     29976 262 -  1189296 I

a score=0.000000
s ce10.chrX              5410464 1066 + 17718866  
e caePb3.Scfld02_0       3698050  822 +  4147112 I
e caeJap4.Scaffold18194   550073    0 +   823664 C
e cb4.chrX              10763045  380 + 21540570 I
e caeSp111.Scaffold626     29976  262 -  1189296 I
e caeRem4.Crem_Contig0   2176941  290 -  4500979 I

a score=882.000000
s ce10.chrX              5411530 12 + 17718866 TGAAAAATGACA
s cb4.chrX              10763425 12 + 21540570 tgaatagagaga
i cb4.chrX              I 380 C 0
s caeJap4.Scaffold18194   550073 12 +   823664 TTAAAAGTAGCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3698050 822 +  4147112 I
e caeSp111.Scaffold626     29976 262 -  1189296 I
e caeRem4.Crem_Contig0   2176941 290 -  4500979 I

a score=387.000000
s ce10.chrX              5411542 2 + 17718866 GA
s cb4.chrX              10763437 2 + 21540570 ga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2177231 2 -  4500979 ag
i caeRem4.Crem_Contig0  I 290 C 0
s caeJap4.Scaffold18194   550085 2 +   823664 GA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3698050 822 +  4147112 I
e caeSp111.Scaffold626     29976 262 -  1189296 I

a score=-863.000000
s ce10.chrX              5411544 2 + 17718866 AA-
s cb4.chrX              10763439 2 + 21540570 ga-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2177233 2 -  4500979 ga-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3698872 2 +  4147112 aa-
i caePb3.Scfld02_0      I 822 C 0
s caeJap4.Scaffold18194   550087 2 +   823664 -AT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     29976 262 -  1189296 I

a score=71942.000000
s ce10.chrX              5411546 178 + 17718866 AAAAAGAATAG--------------------AACTTACGTTTTGCATGCCAAAGTAAGTTTCTATCCGTTGAAAGTGATCTTGGCAGTCGATATTCGCGATACTTATCATGTTCCACAAGCACCTTGATTGCGAC----GTTCCATTTCTCATCATCATCGTTTG-------TCATATTACCGGTGT-GTTTGTATAGAATTACCTGAAC
s cb4.chrX              10763441 176 + 21540570 -aaaacgaAGA--------------CAC-TACACTTACGTTTCGACGGCCAAAGTGGAGACCTATCCGTAAACAAGTGGTTTGAAAGACGGTACTCGCGATACTTTCCATGCCCAACAATCACCCTCTGCACAAC----GTTCCTT------TCTTCATTGCTCG-------TCATGATACCGGTTT-GTTAGTATAGAATTACCTGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2177235 176 -  4500979 -aaaatgaaaa---------------------actcacgTTTGGCGCCCCAGAGTGTAGGTCTATCTGTGCATAGTGAGCTTGGGAGACGGTACTCTCGGTACTTGCCATTCCCAACAAGCACTTTCACAGAAAC----ATTCCATTGCTCATCTTCTTCACTCG-------CCATTATACCGGTTT-CTCAGAATTGAAttacctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     30238 178 -  1189296 aaaaataaaag--------------------tacTTACACTTTGAACGCCAAAGAGGAGATCTATCCGTAGAAAGTGATTTTGGTAGACGAAATTCTCGGAACTTTCCATTCTCCacaatcacttttttcaccAC----GGTCCATTGCTTTTCTCCGTCGTCTG-------ACATACTACCGGTTT-GTTAGTATCAAATTACCTGAAG
i caeSp111.Scaffold626  I 262 C 0
s caePb3.Scfld02_0       3698874 189 +  4147112 aaaaacacaaa--------------------aactcacGTTTTGCGGGCCACAATTGAGATCTCTCGGTGACTTGAGACTTTGGTAGACGAAACTCTCGAAACTTTCCATCACCCATGTACACGTTCTTTGTCACCACTGACTCGAtgtctttctcttcttttttcacatccATATTTTACCGGTTT-GTTAGTATTGAATTAcctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   550089 197 +   823664 --AAATAAAATGTATTCCTGATGCATACATAGACTTACACTTTCTACGCCAGAGTGAGGAATTATTGGTCACTAAACATTTGGGAATACGATATTCCCGAAACTTGTGATGACCGACAAGCACTTTGATAGACAC----TGTGGCCGGACCTTCGTCGTTTTCCG-------ACATTTTATAGGTTTCGTTGATACAGAATTACCTGAAC
i caeJap4.Scaffold18194 C 0 I 1484

a score=56603.000000
s ce10.chrX              5411724 551 + 17718866  
s cb4.chrX              10763617 801 + 21540570  
i cb4.chrX              C 0 I 2237
s caeRem4.Crem_Contig0   2177411 652 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626     30416 662 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3699063 637 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   550286 1484 +   823664 I

a score=-8131.000000
s ce10.chrX              5412275 37 + 17718866 TCTCTGTAGATAAAGCGAAAAAC-----GCCATATTGAAAAC--
s caeRem4.Crem_Contig0   2178070 15 -  4500979 ------cgacacacacacaaa-----------------------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626     31078 40 -  1189296 -c-aaatgaaaagaatggaaactTGGCGTCAACATtaagaaa--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3699700 38 +  4147112 -CTTCATGTACTTCCAGTAAACT-----ACGGAATTaagaaaac
i caePb3.Scfld02_0      C 0 I 1991
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=-4914.000000
s ce10.chrX              5412312 122 + 17718866 ACTTTCACTAACAAATGGTGGAAATCGTTTTGTTAAACTAACTGCATTCTGATTCAGTGTGCTTTCAAATATTGCAATAAAA--------------AAGAGATGGA--ACGAAATAATTGAAAATCGACGGATGGAAG
s caeRem4.Crem_Contig0   2178085  85 -  4500979 acttcca--------------aatt---ttcatccGGGAGTTAGCACTA-----------------------Attagaaaaacc------------aaaagattAAATATGCAGTGATTGAGAG-CAAAAGAGGAAAG
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold626     31118  85 -  1189296 actttga--------------aattaaatttttcaagcaaCACACACTC-----------------------TGCTATAAAATCATGGGGGGTCTGAAAACTTGGAATATGACAT-ATTGAAG---------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=71.000000
s ce10.chrX              5412434 36 + 17718866 -CATTCCACTGGTGAAAAAAACATTAATGCAAAAATG
s caeSp111.Scaffold626     31203 33 -  1189296 ATATTCGAAAAGTGAGA----TATCTATACTGCAAAG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I
e caeRem4.Crem_Contig0   2178170 35 -  4500979 I

a score=-18015.000000
s ce10.chrX              5412470 327 + 17718866 TTTTTTCCCCTGATCTTACAATGATTGAAGACTTTTTTAATTGGAAA---AAATATATG--------ACTAACATAAAACTATATTGGATGTGTGGGAAAATC--ATATTTTAGAATTGCCAAAAGTCTGAGAATTTACTC-----------------------TGTATACATACATATAT------ACTC---TGTA-TAATATATTACAATAAATT----CA-----ACGCTAA-TTCTGCGAGCCCG---CTGAGCAAAATTAGGAATTCATTTGGCAGATGCGCAGCAGAGCTGTGTTTATCAAATGTGTCTATCTAGAAAAATAG--------------TTCAGCATA-----------AGTACAAAACTTCATATTTCTATATGATTATTTTTA-------TTTGCACTTCC
s caeRem4.Crem_Contig0   2178205 364 -  4500979 ------------ttttttcaatgttacACAG---TTCGATGAATAAGCTCAAA---GTG--------TCAATCG-AACAATGTGTTGAACTGACAATTGGCGCCTGTGGGTGTACAGTGTTAAGATTGTGGG---TTAGTTCGGAGAACGTCTGTTCAGTGTAACATAACTACGAAAACAATTTGATATTCTAGTGTT-TAAGATTTCATAGCAACTTTTTACATATTTACGTTAAGATGTGAAAGTTCGTACTTGCAAAGCATCAACTAGTACTACgaaacattggaaaaaaaaaactg---accaGATGAGAGTGACGGAGCAGAtag---------attttctcaaaaaa------taaacatttgagaaagagaga-gagaaagctTTTGTTGATTGGTTCAATATGAAG----
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold626     31236 313 -  1189296 --TTTGTACTCGTTGGTTTAGTAGAACAGAAACTTTCGCACtgtaaa---aaa---gtgaatttacCACAAGCGAAACAGTGT----AACATGCAAGAGAC----ATAGTCGAACATTGTCAATTATACTGG---CTATTC-----------------------TACAAttgtaaaaatga------aatcgaacGTTGTAAtatgttgaaaaaatctatttca-------------aCTTGTTGGTTCG------------------------AATGGAATATACGAAGAAA-------------ATATAAGAGTAtttacaaaaatataatcacaacattttttcgaaaaaagatgtcAAATAGAACGGAAATCAAGATGTGAATACGtttttttATC-------TTTGGACTTCC
i caeSp111.Scaffold626  C 0 I 98
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=-572.000000
s ce10.chrX              5412797 86 + 17718866 GACGGCAAACGCCAAACGGTAAAATTCAGCTACTATTTTACATTAGACAAAAAATCCGATAACAACCAGTAAAACTGGCCGAA-AAA
s caeRem4.Crem_Contig0   2178569 60 -  4500979 -------------AAGTTATACAACACCGC----ACTTTCTAATGAATTATGAATCCT----------GAGAAGCTGGGGGAACAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I
e caeSp111.Scaffold626     31549 98 -  1189296 I

a score=-1558.000000
s ce10.chrX              5412883 25 + 17718866 --------------------CAGTAAACTCCT--------TTAAAAAAAATAG
s caeRem4.Crem_Contig0   2178629 52 -  4500979 CTGACACCTTCTCCTTTCCTCGCTCCTCTCTTCTTCCTACTCAACACATACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     31647 25 -  1189296 --------------------TAGTTCtccctt--------ttaaaaaatattg
i caeSp111.Scaffold626  I 98 I 165
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=-564.000000
s ce10.chrX              5412908 115 + 17718866 CTGCGGCCAAAATTTTCATTTT------GCAAAACAAAAAA--------CTTAAAAAAGTTAGAACATTTAATA---AACG-----TTGAGCCAAAAGCAGACATTATACAAATTAGTGCACATT-GATACCGGAATA
s caeRem4.Crem_Contig0   2178681 124 -  4500979 --------AAGATGCACACTTTTTGagggagaaatggaaaaagggcCGTCTTGACAAGACTTGACACTTCTATATTGAATGCTTTTTTGAGCCAACACTGCGCTTCA---ATATTAGAGCTAATTAGAT---GAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I
e caeSp111.Scaffold626     31672 165 -  1189296 I

a score=-9670.000000
s ce10.chrX              5413023 153 + 17718866 ----------GGCATGG-----------------TTGTTCAAAAC--ATCTATTCAATTAAAGTC-TCATACTGCCCTCAT-----CGAAACA-------------CTAGCGACATATAAAGCGGAATGATGATAGTGCATCATTAGAAGGATCTGATCAATAGGCA---GAGCAGAGCTATATGTGTCGTCCACGTAACGAGA------------------------
s caeRem4.Crem_Contig0   2178805 205 -  4500979 GGCGTCTTCAAGCACTGCATTTTTCTTCTATGCAATTATAGAAGAGGAAgtcttgaaacaaaaactttggaTTAATGTCATTATTCAGAAACA-----AAGAAGCTACAGTATGACA--AAGCTGTTTGTTGA-------Tggagaaaagttttaaatcaaa--------aagcAAGA-GATATGAAACTGCTATGCGAAGTCAGATGattggaagaaaataaaatgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     31837 152 -  1189296 ----------GACATGG-----------------ATGttagaattttaaatattggaacaaa----ttgaat--------------agaaacaGAACGAAAAAGATATAGAAGAATATTAATCTG-ACATTGA--------GAGCAAGAGTGTGACAGCCAAAGTTAGACAAGCAGAA-GATATGAAACTACT---CAATgtaag---------agaaa---------
i caeSp111.Scaffold626  I 165 C 0
e caePb3.Scfld02_0       3699738 1991 +  4147112 I
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=19042.000000
s ce10.chrX              5413176 234 + 17718866 GAAGTAGGCTAGAAGAGTACGAAAAACATTGAGC--CGGC----------GAG------AGAGAGAGTCTACCAATTTGAGGGTGCGGAGAAAGATTAATAGGCAAAAAAGATTGAAGT-----ATGGAT-------------TTGAACGTATACGACTT-----------TTACGACCACCAAAAAAAAATCAACGGCAA-----ATGTTTTATGGATCCTTCTTTTACGCGGTTCTAAATTAGTTGTAATTGA-------AAACGAGACGATCGCAACATATTAT----AAACGA
s caeRem4.Crem_Contig0   2179010 253 -  4500979 gaagaatACTGAAAGGGTGGgaaaaacattgaga--aaacTGGTGTGAAAGAAAGGGAGAAAGAGAGTGCACAAACCTGAGGG-GTGTTGAAAGATTAATAGGC-AAAAAGATTGTGATATGTGATGGATGAAAA--------CTGAACGAATACGACTT-----------TTTTGCGGAGAAGAAATGGGTGTCATAAATCTCCCTGGTCCCTccaattc-----tta----tttttaaaatagcTGTCATTGACTCATGATGAAAATAGATGTGCAC------------AGACGA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626     31989 263 -  1189296 gaggaaagcTAAAAGTGTGCGAAAACTCCTGCAATTcaat---------agaa------agaaagagtGCACAAATCCGAGGA-GAGCTGGAAGATTAATAGGC-AAAAGTA-TGAGATGCGTGACggatggaaaaagaaa--ttgaacgTATACGACTTTGGCAGGAAATTGCCGAGAACGGATAGAGGATGCAAGGAAA-----TTGAGAcgcaatttc-----aaaaaaatattcaaagtgGCTGAGATTGACAT----TAGAAAGCAACGAACATCATCTCTTATTGAAATTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3701729 255 +  4147112 gaagaagactGGAAGTCAGTGAAAAATACTACGA--AAGC---------AGAA-----GAGAAAGAGTGCATCAATCCGAGGG-ATGCTGAAAGATTAATAGGC-AGAAGGATTGAGATATGTGATGGATGAAGAAAAGCGTTTTGAACGTATGCCATTCTGAC-------CCTGGaggtggaaaaaaggaagaaagaatg-----aGGGTCTAAAAATCC-----TTACAATTCTTTAAAGTGGCTATAATTGTTTT---GCAAACAGAAAATAGCAACATTTCCT----AAACGA
i caePb3.Scfld02_0      I 1991 C 0
e caeJap4.Scaffold18194   550286 1484 +   823664 I
e cb4.chrX              10764418 2237 + 21540570 I

a score=-8840.000000
s ce10.chrX              5413410 61 + 17718866 ----------ACAACATGCCAAATTGGCTCACATTTTCTAATGTACTTTC---------GAGTTTTTTACCGGTC------AATGG
s cb4.chrX              10766655 65 + 21540570 ----------ACAACAT----AATTGGGTCCTAT-------TGtacttttgggaaaaaaacaactttttatgCTCCCTAAAATTGG
i cb4.chrX              I 2237 C 0
s caeRem4.Crem_Contig0   2179265 60 -  4500979 ----------ACATTAC----AATTGGCTCCAATCCGAAAATGCactttc---------acacttttttggtATC---GATGGTGG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     32252 53 -  1189296 GCAGCAATGAA------------------TTAC--------TGCACTTTT-----CTAATCATCCACTTAGCGTCA--GAGTCTGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3701984 63 +  4147112 ACATCAGAGAACAGAAT----AATTGGCTCCAA--------TGTActtta-----cagatttttttctgatggtC------TATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   550286 1484 +   823664 I

a score=58415.000000
s ce10.chrX              5413471 91 + 17718866 TATAAAGGGG-AAAGTCACATAT-AACTAAATATCATAATCTCAGTTTTGAGGAGTCATGATGCCGTTCATTGTAGCTTCAAATTCCCGAGGT
s cb4.chrX              10766720 92 + 21540570 TATAAAAGGG-GCAAtgacaaaatcggaaaacatCAGAGTTTCTTTTTACGAGAAACATGATGCCGTTTATTGCCGTCCCCCAATCTCTAGGT
i cb4.chrX              C 0 I 66
s caeRem4.Crem_Contig0   2179325 91 -  4500979 TATAAaagga-aatatgaaaaga-agaaaactatcAGAGTCTCTCTTTTTGAGAATCATGATGCCGTTTATTGCTGTCCCCCAATCTCGAGGT
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626     32305 91 -  1189296 TATAAAAGGA-AGGATCACGTGA-AGATGAATATTAGATTCTCATTGTCTGAGAATCATGATGCCGTTTATTGCTGTCCCCAAACCTCGAGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702047 92 +  4147112 TATAAAAGGAGAGAATCACGTGA-AGAAGAATATCAGAGTCTCACTTTCTGAGAATCATGATGCCGTTTATTGCTGTTCCCCAATCTCGAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   551770 83 +   823664 TATAAAAGAG-CAATTCATGTTC-Cacaaaatatta--------ttgtttaGGAACTATGATGCCGTTTATTGCTGCTCCCCAACCGAAAGGT
i caeJap4.Scaffold18194 I 1484 C 0

a score=-6837.000000
s ce10.chrX              5413562  9 + 17718866 ATGTTTGA---------G-
s caeRem4.Crem_Contig0   2179418 10 -  4500979 ATATTTTG-------CA--
i caeRem4.Crem_Contig0  I 2 I 2
s caeSp111.Scaffold626     32396 15 -  1189296 ATACATTATTTTGAG----
i caeSp111.Scaffold626  C 0 I 73
s caePb3.Scfld02_0       3702139  8 +  4147112 ATaaacag-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   551853  9 +   823664 ATCTTTAG----------A
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10766812 66 + 21540570 I

a score=-5270.000000
s ce10.chrX              5413571 47 + 17718866 ---AATCGGTTACTTCTATGTATCA--GAAATGTATGTTCGATCTGCAT-------AAT
s caeRem4.Crem_Contig0   2179430 43 -  4500979 ---TCTGTGAAGTCGACAAGCATAATGGGA------GCTATATAAACGT-------AAT
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3702147 41 +  4147112 ---ttttgaatattttcgtGTATAC--GAA------ATATTATGGATAT-------AAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   551862 46 +   823664 ATGTCATGAAAACT-----ATGTCA--GAG------AATTCTTCTGCGTTCTAGAAAAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10766812 66 + 21540570 I
e caeSp111.Scaffold626     32411 73 -  1189296 I

a score=-1903.000000
s ce10.chrX              5413618 36 + 17718866 TAGCAACGGTTAGAAAT---AGGAT--TCGTGTCAACACAG
s cb4.chrX              10766878 18 + 21540570 -----------------------GAGGAACTGTCAATAACA
i cb4.chrX              I 66 I 6
s caeRem4.Crem_Contig0   2179473 38 -  4500979 TGGCTGGTGTTAGACAG---TGGACGGCACTGTCAACAACC
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3702188 38 +  4147112 TAGCTAAAGTTATTGAA---GGGTTGACACTGTCAACAATA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   551908 41 +   823664 TGGTTAGTATTAGTGAGCACTAGAATAAAACGTAAACAAGT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     32411 73 -  1189296 I

a score=39876.000000
s ce10.chrX              5413654 188 + 17718866 --AAAGTGGCTCCAGTTTCAA----ATCGAA---AATAT--------------GCCCACTTCGC--AACAATTTCTGGTCATTTCTTAGTCTAACATT--TTTGTTCA----CAACTCTTCTTTTAATATAATTTGTATTAAGATTTGGAGAAAATGAGCGCATGTCTTGTTGGAAGCTGGGCTAAGATTCCGAATGGAGAAGATGGTCATGAAATGGC
s cb4.chrX              10766902 190 + 21540570 --AAATTGGCTCTAATTTTGT----GTATAT---AACAG-----AATGATGA-TGACACTTCGC----CTTTATTTGG-----CCATGAGCTCATGTCATGCTGTATA----CTGCATTTTCTGAACTGGAGTTTCT-TCCAGATTCGGAGAGAATGAGTGTGTGCCTAGTGGGTAGCTGGGCAAAAATCCCGAATGGAGAGGATGGTCACGAAATGGC
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2179513 187 -  4500979 --AAAGTGGCTCAAATTAAAG----ATAGATGAAGACAGTTGTCAATAAAGA---ATATTCTAC----CAATATTTAG---TTTTACGAGCGTTTGTTCGATTGACTA----CTGTAtct-----------atttgt-ttcagaatcggAGAAAATGGATGTCTGCCTAGTTGGAAGCTGGGCAAAAATAGCGAATGGTGAAGATGGTCATGAGATGGC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     32484 185 -  1189296 --AAAGTAGCTCATATTTTGC----TAAAGT---AACGC-----AGTTCCAAATAGAAATTCGC---------GTCAG---TTATTCGAGAAATCGTTCATTTCCctatattttatatttctat-------TGTTAT-TTCAGATTCGGATAATATGAATCCTTGTCTTGTTGGAAGTTGGGCTAAAATTCCCAACGGAGAAGATGCGCATGATATGgc
i caeSp111.Scaffold626  I 73 C 0
s caePb3.Scfld02_0       3702229 176 +  4147112 --AAATTGGCTCCAGTTTGGAACTGTGTAGT---GACAG-----TATCC----taaaatttctc-----------------tttttcgagaGCCTTTCCATCTGGTTA----TTATATTACTTT-------TCTTGT-TGCAGACTCggagaaaatggaagtttgCCTAGTTGGAAGCTGGgcgaaaattccaaatggAGAAGATGCTCATGATATGgc
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   551949 178 +   823664 GTTAATTGGCTGTAGTTGTAA----G--------AACGC-------------------ATTCGCTTGAAACCATCGAG---TCattcta--ttctctctatctcttta----ttttctctctattttcaa-ttttctattcAGATTCCGATAAAATGATTGCGTGTCTAGTGGGAAGCTGGGCTAAAATACCGCATGGAGAAGATGAGCTCCATATGGC
i caeJap4.Scaffold18194 C 0 C 0

a score=4104.000000
s ce10.chrX              5413842 6 + 17718866 AGAAAA
s cb4.chrX              10767092 6 + 21540570 GGAGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     32669 6 -  1189296 agaaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702405 6 +  4147112 ggaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552127 6 +   823664 AGAGAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2179700 0 -  4500979 C

a score=3128.000000
s ce10.chrX              5413848 24 + 17718866 CATTTTCCTGAACAGGTAGGTACC-
s cb4.chrX              10767098 21 + 21540570 CATTTTTCTCAACAGGTaata----
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3702411 21 +  4147112 cattttcttaaaTAGGTGAGT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552133 22 +   823664 TGTTTTCCTGAACAGGTGTAC---C
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     32675  0 -  1189296 C
e caeRem4.Crem_Contig0   2179700  0 -  4500979 C

a score=-2679.000000
s ce10.chrX              5413872 34 + 17718866 GTATGAAGTTTTGAAAGTTTCAAAGTAAAGTAAC
s cb4.chrX              10767119 30 + 21540570 -aatagtttttt---aatttaaaatttgtgtACC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3702432  9 +  4147112 -TATGat---------------aac---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   552155  0 +   823664 C
e caeSp111.Scaffold626     32675  0 -  1189296 C
e caeRem4.Crem_Contig0   2179700  0 -  4500979 C

a score=-2426.000000
s ce10.chrX              5413906 96 + 17718866 TTTAAAAAAATGAAAGAAATGAATGAAAAATGTCGTAAACCGCGTTTTTTAAATTACAATGAATACCACATAATATATTTTTACTGACGAAAAACG
s caePb3.Scfld02_0       3702441 18 +  4147112 tgttcaaaaat------------------------------------------------------------------------ttgac------ct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   552155  0 +   823664 C
e cb4.chrX              10767149  0 + 21540570 C
e caeSp111.Scaffold626     32675  0 -  1189296 C
e caeRem4.Crem_Contig0   2179700  0 -  4500979 C

a score=-20047.000000
s ce10.chrX              5414002 198 + 17718866 GGAAAATCATAGGAAGTCCTTCTTTTTCTTCCATAGAACAGTTAAGAATTGTCATTTTTACCAGAAAATACCAAATAAAACAAGCTAGCTTGCACGGAAGATTTTGAAACAAAATTGTAATATTTAGCAAAAAGCTGTTTTTTTTTCAAATTTCAAACAATTTCAAAATAAGTTTATTTGTAGTTGGCTACTCCAACT
s caeRem4.Crem_Contig0   2179700  47 -  4500979 GGAAAA---------------CATTTTCCTGAACAGGTACATTGAAA-----------------------------------------------------ATCATGAC---------------------------------TTCACTA--------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     32675  47 -  1189296 ---------------------tatatttttaaacagGTATgtta--------------------------------------------------------atttctaa---------------------------------ttttcca-------------------------------gTCACGgag----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702459  87 +  4147112 AGAAAA--------------CCATGATATTGAACCGCAAGGTCAAAAAT--TCGGTTT----------------ACAAAGCC------------------ATTCTCAC---------------------------------TCTCTCACAT----------------ATAA--TCAATTGTAACTGAT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   552155   0 +   823664 C
e cb4.chrX              10767149   0 + 21540570 C

a score=12.000000
s ce10.chrX              5414200 9 + 17718866 TTAACAATA
s caeRem4.Crem_Contig0   2179747 3 -  4500979 -----AAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     32722 4 -  1189296 -----aata
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702546 7 +  4147112 --AGCAATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552155 9 +   823664 Ttaataata
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10767149 0 + 21540570 C

a score=17508.000000
s ce10.chrX              5414209 48 + 17718866 ---------------ATTTTAACATTACAGGAATAACATCGCATTGCTTCCAGTAGAAAAGAA
s cb4.chrX              10767149 48 + 21540570 ---------------ATTTTCAATTTACAGAGATAATATCGTCCCTATTCCAAGGGATAAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2179750 47 -  4500979 ----------------ATGTTATTATTCAGGGACAATATCGTGCCACTACCAATTGATAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     32726 40 -  1189296 -----------------------ttttcagagataatATTGTTCCACTCCCAATTGATAAACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702553 40 +  4147112 -----------------------TTTTCAGAGATAATATTGTCCCTCTCCCAATTGATAAGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552164 63 +   823664 atttaaaaaatatgcaAATTTGTATTTTAGGGACAACATTGCTCCGCTGCCAGAGGATAAATG
i caeJap4.Scaffold18194 C 0 C 0

a score=106774.000000
s ce10.chrX              5414257 95 + 17718866 TTACCTCTCTGATTTTCGTGAAAAACACCCGGAGGTCAAAGCAGCCCTTGTCGATGGAATTGAGTACTTCGATGATCAATATTTTGGTGTATGAA
s cb4.chrX              10767197 95 + 21540570 TTATCTATCGGATTTTCGTGAAAAGCATCCAGATGTCAAAGCTGCTCTTGTCAATGGTATCGAGCATTTCGACGACCAGTACTTTGGGGTAAGAA
i cb4.chrX              C 0 I 504
s caeRem4.Crem_Contig0   2179797 95 -  4500979 TTACCTTTCCGATTTCCGTGAGAAGCATCCCGATGTGAAAGCAGCACTTGTCAATGGAATTGAGTACTTCGATGACCAGTACTTTGGGGTGAGCA
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold626     32766 95 -  1189296 TTATCTTACCGATTTTCGTGAGAAGCATCCGGATGTGAAAGCTGCTCTTTTGAATGGAATTGAATTCTTTGATGACCAGTACTTCGGagtaaaaa
i caeSp111.Scaffold626  C 0 I 31
s caePb3.Scfld02_0       3702593 95 +  4147112 ATACCTTACCGATTTTCGTGAGAAGCATCCAGACGTGAAAGCTGCGCTCGTCAATGGAATTGAATACTTTGATGACCAATACTTTGGAGTGAGAA
i caePb3.Scfld02_0      C 0 I 35
s caeJap4.Scaffold18194   552227 95 +   823664 GTATCTCAATGATTTTCGTGAGAAGCATCCAAATGTGAAATGTGCTTTGGTGGACGGGATCGAATACTTTGATGATCAATATTTTGGAGTGAGtg
i caeJap4.Scaffold18194 C 0 I 81
s caeAng1.scafRNAPATH9        82 91 +    24476 TCATCTCcaagaattttgtgaaaaacatCCCGAAGTCAAGGCTGCTCTTGTCAAAGATATTGATCAATTTGATGATCAATATTTTGGTGTC----
i caeAng1.scafRNAPATH9  N 0 C 0

a score=0.000000
s ce10.chrX              5414352 33 + 17718866 TCAAATGTTTAGGGGTTTCCGCATAAATGTTTA
e caeAng1.scafRNAPATH9       173  0 +    24476 C
e caePb3.Scfld02_0       3702688 35 +  4147112 I
e caeJap4.Scaffold18194   552322 81 +   823664 I
e cb4.chrX              10767292 504 + 21540570 I
e caeSp111.Scaffold626     32861 31 -  1189296 I
e caeRem4.Crem_Contig0   2179892 36 -  4500979 I

a score=284899.000000
s ce10.chrX              5414385 225 + 17718866 CATTATAGACAGGAGAGTCGGAAGCCATCTGCATGGATCCTCAGCAAAGAATGTTGATGCAAGGAGTTATAAAAGGATTGGAAAATGCTGGAATCACTCTTGAGATGGCGTCTGAAGCGCGTGTCGCCGTCTACACTGCAGCGTGGTGCTATGACTACAAAGACTTGCTCCCACCTGATCAGTACATGGCAACAGGAAATTCGGCTAGTGTTATGTGTGGGAGGT
s cb4.chrX              10767796 224 + 21540570 CTATTCAGACTGGTGAGTCGGAAGCGATTTGCATGGATCCCCAACAGCGTATGCTAATGCAAGGAGTGATCCAAGCATTGGAAAACGCTGGAATCTCCATTGAAATGGCTTCTGAAGCGCGTGTGGCCGTTTACACTGCCGCTTGGTGCTACGACTACAAGGATCTTCTTCCGCCAGATCAGTACATGGCAACTGGAAACTCGGCTAGTGTCATGTGTGGAAGG-
i cb4.chrX              I 504 C 0
s caeRem4.Crem_Contig0   2179928 225 -  4500979 CATTTCAGACTGGCGAGTCAGAGGCCATCTGTATGGACCCTCAACAACGAATGTTGATGCAGGGAGTGATACAAGCATTGGAGAATGCTGGAGTCACTATTGAAATGGCTTCAGAAGCGCGCGTGGCTGTGTACACTGCCGCCTGGTGCTATGACTATAAGGATCTCCTTCCACCAGATCAGTATATGGCGACGGGAAATTCGGCGAGTGTCATGTGCGGAAGGT
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold626     32892 225 -  1189296 CATTTCAGACCGGCGAATCTGAAGCAATATGCATGGATCCCCAGCAAAGAATGTTGATGCAAGGGGTAATACAAGCATTGGAAAACGCTGGAATCACTATTGAAATGGCGTCAGAAGCAAGAGTAGCTGTATACACGGCTGCTTGGTGTTACGACTACAAAGACTTGCTTCCGCCGGATCAGTACATGGCTACCGGAAATTCAGCCAGTGTTATGTGTGGAAGGT
i caeSp111.Scaffold626  I 31 C 0
s caePb3.Scfld02_0       3702723 225 +  4147112 ttttttagaCGGGCGAGTCAGAAGCAATCTGTATGGACCCGCAACAAAGAATGTTGATGCAGGGAGTGATAAAAGCATTGGAGAATGCGGGTATCACTATTGAAATGGCCTCCGAAGCTCGCGTGGCCGTTTATACTGCGGCTTGGTGCTATGACTACAAAGACCTGCTTCCACCGGATCAGTATATGGCCACCGGAAATTCAGCCAGTGTTATGTGTGGAAGGT
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18194   552403 223 +   823664 --GTTTAGACTGGAGAGTCCGAGAGTCTTTTTATGGATCCTCAGCAACGAATGCTCATGCAGGGAGTAGTTTTGGCTTTGGAAAACGCTGGAATCACTCTTGAGATGGCGTCTGCAGCGCGAATATCCGTCTACACCGCTGCTTGGTGCTATGACTACAAAGACCTTTTGCCTCCGGACCAATACATGGCAACCGGAAACTCGGCGAGTGTCATGTGTGGGAGGT
i caeJap4.Scaffold18194 I 81 C 0
s caeAng1.scafRNAPATH9       173 214 +    24476 -----------GGTGAATCCGAAGCAATTTTCATGGATCCTCAACAAAGAATGTTGATGCAAGGAGTTATTGGAGCTTtggaaaatgctggaatcaCTATTGAAATGGCTTCTCAATCAAAAGTTGCTGTTTATACTGCAGCTTGGGCGTATGATTATAAAGATTCATTGCCACCAGATCAATATATGGCTACGGGGAATTCAGCAAGTGTCATGTGTGGAAGGT
i caeAng1.scafRNAPATH9  C 0 C 0

a score=1804.000000
s ce10.chrX              5414610 4 + 17718866 AAGT
s caeRem4.Crem_Contig0   2180153 4 -  4500979 ACGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33117 4 -  1189296 GCGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3702948 4 +  4147112 GCGT
i caePb3.Scfld02_0      C 0 I 718
s caeAng1.scafRNAPATH9       387 4 +    24476 AAGT
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   552626 0 +   823664 C
e cb4.chrX              10768020 0 + 21540570 C

a score=-34001.000000
s ce10.chrX              5414614 131 + 17718866 AAATGTACATATAACAACAAATATGGCAGGGGTATAGGTGATTAGAATGTGTAA-ATATCATGATAATTAACAGTGACTGGTGtttttttgatcgacgacttccaaaaatggacaaaaattgagtaactacc
s cb4.chrX              10768020  40 + 21540570 ---------------------------------TGAGAAAACGAATGTGTTTGTTATGACA-----------------------------------------GAAAAAGTAAAC------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180157 103 -  4500979 -----GAAAT-TATCCGCATGAGCGGTAGA-GCTGAGATAATGGAAGTGTATTGCATGGTATAGTGAATAAC--TCATTAATTTTA---------ACGACGTTAGAAAGTACACAGAGAT-----------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33121  84 -  1189296 -----TAGGC-TATCATAGTTGATGAaaga---tgaaggaa--aaaattgatgatatGGAATag-----------aattagttttt---------tgagcGTACTAAAGATAAC-----------------G
i caeSp111.Scaffold626  C 0 C 0
s caeAng1.scafRNAPATH9       391  29 +    24476 ------------------ACTGAgatgaga---tgaaaaaa--aacctagtT--------------------------------------------------------------------------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3702952 718 +  4147112 I
e caeJap4.Scaffold18194   552626   0 +   823664 C

a score=-9225.000000
s ce10.chrX              5414745 26 + 17718866 actatttgaaacaaaat-----aaaaatttt
s cb4.chrX              10768060 30 + 21540570 TAGACGGAAAATGAGAT-TCGTGGTTGTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180260 31 -  4500979 AAAATGTAACATCAGATATCAGGAACGatta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33205 26 -  1189296 GATATGTTTCAGTAGTT-----AATCAACCG
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   552626 17 +   823664 ACTAATTTAGTCAAAAT--------------
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9       420 15 +    24476 -----------CAAagt-----aataatttt
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3702952 718 +  4147112 I

a score=333.000000
s ce10.chrX              5414771 13 + 17718866 caaattttttttt
s cb4.chrX              10768090  7 + 21540570 ------TTTATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180291 13 -  4500979 caaaattttgttg
i caeRem4.Crem_Contig0  C 0 I 79
s caeSp111.Scaffold626     33231 12 -  1189296 GAAGtttttaat-
i caeSp111.Scaffold626  C 0 C 0
e caeAng1.scafRNAPATH9       435  0 +    24476 C
e caePb3.Scfld02_0       3702952 718 +  4147112 I
e caeJap4.Scaffold18194   552643  0 +   823664 C

a score=-20365.000000
s ce10.chrX              5414784 153 + 17718866 gaaaagtgttactatgatattttgtcatttttgtctcatggtttataactatatatccccactgacactatttcaTAGGAGA--AACAAACAGAATCCTGAAACAACTGATTCTCATAATACTTCAAAAAAAGTTGAACATTTTATTGCGGTTCG
s cb4.chrX              10768097  58 + 21540570 --------------------------------GTCTCTCACTCTGGTGTCACATT----CTTTCACATTATCTTACACAATA--TACCAATTGATT-----------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     33243  82 -  1189296 gagaaaaa----------------------aggttacGTAGATTGAACAGATAAA----GATAACAATTTTGTTATAAAAAAGTGGCCAAGAGAATTT--------------------------------GAGGGAAACA---------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   552643  20 +   823664 --------------------------------------------------------GTTCATAACAATTGTTTTGG-------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9       435   0 +    24476 C
e caePb3.Scfld02_0       3702952 718 +  4147112 I
e caeRem4.Crem_Contig0   2180304  79 -  4500979 I

a score=-3202.000000
s ce10.chrX              5414937 21 + 17718866 AAACTCCAATATG-CCTACAAA
s caeRem4.Crem_Contig0   2180383 13 -  4500979 AAACTTCTTTATG---------
i caeRem4.Crem_Contig0  I 79 C 0
s caeSp111.Scaffold626     33325 14 -  1189296 AAACTATGAAATTG--------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   552663  1 +   823664 ------------G---------
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9       435  0 +    24476 C
e caePb3.Scfld02_0       3702952 718 +  4147112 I
e cb4.chrX              10768155  0 + 21540570 C

a score=277409.000000
s ce10.chrX              5414958 296 + 17718866 TTTAGAATCACCTACTTTCTGAATTCGCGCGGAGCCGCCGTGGGAATCGAAACTGCTTGCTCGTCTTCTCTCGTTGCTTTTCACCTTGCACGACAAGCAATTCAATCTGGAGAAACCAAGCTAGCGCTTGTCTGCGGAGCTAACCATGTTGGTTCAAGGTAACAAAATTTAAACT-----------TAAGAAGTTTATT-------CTTA--AATTCAA--------CAGATCGTTTCACTCTCTCTACAACTCCCATATGGTTTCACCAAACGGTCGTCTTGCTGCGTTCGATCGTTCTGCAAATGGATTTGTTAGAGCAGAA
s cb4.chrX              10768155 295 + 21540570 -TTAGAATCACCTATTTTCTAAACTCTCGGGGAGCAGCTGTTGGAATTGAAACTGCTTGCTCCTCGTCGCTTGTGGCTTTCCATCTTGCACGACAGGCAATTTTATCGGGAGAAACCAAACTTGCCCTGGTCTGTGGAGCCAATCATGTTGGATCCAGGT----GAGTTACATTT-----------TTGAG---TGACTCAAG---CTCa--agtttatttt-----cagatctttccACTCTCTTTACAACTCTCATATGGTCTCTCCAAATGGACGCCTTGCTGCTTTCGACCGTTCTGCTAACGGATTTGTTCGAGCTGAA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2180396 297 -  4500979 TTTAGGATAACCTATTTCCTGAACTCCCGAGGAGCCGCTGTTGGAATTGAAACCGCATGTTCCTCATCTCTTGTTGCTTTTCATCTTGCTCGACAAGCAATCATGTCTGGTGAGACAAAACTTGCTCTTGTCTGCGGAGCTAACCATGTTGGATCGAGGT-----------ACCT-----------CTAGAACTTAACTCAAGCATCTCACTAATCTGTTAT-----CAGATCATTCCACTCGTTGTACAACTCTCACATGGTTTCCCCTAACGGACGTCTGGCTGCATTTGATCGTTCTGCAAACGGTTTCGTTAGAGCAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33339 294 -  1189296 TTCAGAATCAcatattttctgaactcTCGCGGAGCTGCTGTTGGAATTGAAACTGcttgttcttcttcacttGTCGCTTTTCATTTAGCCCGAAAAGCTATTTTATCTGGAGAAACTAAACTCGCTTTGGTCTGTGGGGCCAACCATGTTGGATCAAGGT-----------AGGC-----------GAGAGACTGTTTTCT-----CTC---CATATATCAAATCGGCAGATCTTTCCACTCACTATACAATTCTCATATGGTCTCACCAAATGGACGTCTCGCTGCTTTCGATCGCTCTGCTAATGGATTCGTGCGTGCTGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3703670 298 +  4147112 ttcagaataacttaTTTCCTAAACTCTCGTGGTGCCGCTGTTGGAATTGAAACTGCCTGTTCCTCTTCCCTCGTAGCTTTTCATCTCGCACGTCAAGCAATTCTTTCTGGAGAAACTAAACTCGCCCTGGTCTGTGGAGCCAATCATGTGGGATCAAGGT-----------AGTCTTACTTCAGAGTAAGAACAGTATTCA-----CTC---TACCTATT-------CAGATCATTTCATTCACTCTACAATTCTCACATGGTTTCACCTAACGGACGTCTTGCTGCTTTTGATCGCTCTGCAAATGGTTTCGTCCGCGCTGAA
i caePb3.Scfld02_0      I 718 C 0
s caeJap4.Scaffold18194   552664 296 +   823664 TTCAGAATAACTTATTTCTTGAACTCTCGAGGTGCTGCGGTGGGGATTGAAACCGCGTGTTCCTCTTCTCTCGTGGCCTTTCATCTGGCCCGACAGGCGATTCTCTGCGGCGAGACAAAACTTGCACTAGTCTGTGGAGCCAACCATGTTGGTTCAAGGT------ACCAggcat-----------tttgattttttatcatGAT-CTT---CATACTTT-------AAGATCCTTCCACTCTCTTTATAACTCCCACATGGTATCCCCAAATGGCCGCCTTGCAGCTTTTGATCGTTCTGCTAACGGCTTCGTTCGTGCGGAA
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9       435 252 +    24476 tccagaatcacatattttttgaattctcgTGGCGCTGCTGTTGGAATTGAAACTGCTTGTTCTTCATCTTTGGTAGCTTTCCATATGGCTAGACAAGCTATTTTGAATGGTGAAACAGAATTAGCCTTGGTATGTGGTGCAAACCACGTTGG------------------------------------------------------TTC------------------TCGTTCATTCCACTCTTTGTATAACTCTCATATGGTTTCACCAAATGGTAGATTGGCCGCTTTTGATAGATCAGCAAACGGATTTGTTAGAGCCGAA
i caeAng1.scafRNAPATH9  C 0 C 0

a score=2865.000000
s ce10.chrX              5415254 2 + 17718866 TC
s caeRem4.Crem_Contig0   2180693 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33633 2 -  1189296 TC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3703968 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552960 2 +   823664 TC
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9       687 2 +    24476 TC
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10768450 2 + 21540570 I

a score=178582.000000
s ce10.chrX              5415256 138 + 17718866 GTTTGCTGTGGCTGTTTTGTGCTCGAAACAGTTTGCCGAAGAAAATAATTTGCTCATTCATTGTGAATGTGTTGGCTCAGCTTTTAATAGTGACGGAAAAACACCGTCTTTAACCGCACCAAACCCGATTTCGCAATA
s cb4.chrX              10768452 138 + 21540570 GTTCGCTGTGGCGGTTTTGTGCTCGAACCAGTTTGCAGCGGAAAATAATCTGAACATCCACTGTGAATGTATTGGGTCAGCTTTCAACAGTGACGGAAAAACGCCTTCGCTTACCGCGCCAAATCCAATTTCGCAATA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2180695 138 -  4500979 ATTTGCTGTTGCAGTTCTCTGCTCGAAACAATTTGCAGAGGAAAACAATCTACGCATTCACTGTGAATGCATTGGCTCTGCTTTCAATAGTGACGGAAAAACTCCATCGCTTACCGCTCCAAACCCGATTTCGCAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33635 138 -  1189296 TTTTGCTGTCGCTGTGCTCTGCTCGAAACAGTTCGCTGAGGAAAATAATCTTCGCATTCACTGTGAATGCATTGGATCCGCTTTCAATAGTGATGGGAAAACGCCTTCATTGACAGCCCCAAACCCGATTTCGCAATA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3703970 138 +  4147112 TTTCGCTGTAGCTGTGCTTTGCTCTAAACAATTTGCCGAAGAAAATAACCTACGCGTTCACTGTGAATGCATTGGATCCGCTTTCAACAGTGATGGAAAAACACCATCGCTAACCGCACCAAACCCAATTTCACAATA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   552962 138 +   823664 GTTTGCCGTTGCAGTTCtttgttcgaaaaagtttgCAGAGGAAAATAATTTACGTATTCACTGTGAATGCATTGGATCCGCATACAACAGTGATGGAAGAACACCATCGCTTACGGCGCCTAACCCCATCTCGCAATA
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9       689 138 +    24476 TTTTGCTGTTGCTGTTTTGTGTTCGAGTAAATTTGCGATCGAAAATAATCTCAATATTCATGCTGAATGCATCGGATCTGCTTTCAACAGCGATGGAAAAACACCATCTTTAACTGCtccaaatccaatttctcaACA
i caeAng1.scafRNAPATH9  C 0 C 0

a score=6973.000000
s ce10.chrX              5415394 6 + 17718866 TGAGGT
s cb4.chrX              10768590 6 + 21540570 TGAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180833 6 -  4500979 TGAGgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     33773 6 -  1189296 TGAGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3704108 6 +  4147112 CGAGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   553100 6 +   823664 CGAGGT
i caeJap4.Scaffold18194 C 0 I 15
e caeAng1.scafRNAPATH9       827 0 +    24476 C

a score=8.000000
s ce10.chrX              5415400 2 + 17718866 CA
s cb4.chrX              10768596 2 + 21540570 AA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     33779 2 -  1189296 TA
i caeSp111.Scaffold626  C 0 I 36
s caePb3.Scfld02_0       3704114 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9       827 0 +    24476 C
e caeJap4.Scaffold18194   553106 15 +   823664 I
e caeRem4.Crem_Contig0   2180839 0 -  4500979 C

a score=-6006.000000
s ce10.chrX              5415402 128 + 17718866 TTTTGTAGAAAACTTTGATTGAAACCACGTAAaaaactgcgtggcgtgtatgcaaaaaatcaaaatgtaggctccatcCATTTTAAGGAATATTTTGTGAGATAATT-------CGTAATCACGAGGGTAGGTAA
s caeRem4.Crem_Contig0   2180839  69 -  4500979 --------------------------------------------------------gaaataaaatat----------aatgCTAATGAAGTTAAAGCATGAAAATTAACtcagagttatcaaaaaagcaAGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3704116  60 +  4147112 ------------------------------------------------------GTAGATCAAAATCG----------CCTTTTAAGAGAGTT--AGTATTAAACTT-TTagagagtttttgaatag--------
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9       827   0 +    24476 C
e caeJap4.Scaffold18194   553106  15 +   823664 I
e cb4.chrX              10768598   0 + 21540570 C
e caeSp111.Scaffold626     33781  36 -  1189296 I

a score=-2336.000000
s ce10.chrX              5415530 141 + 17718866 TATCATAGCCTGACATCTACAGGGTACCGCGGAGCACCACGCCCACAGTACTGCGCGGAACCCGGTGAATGTCGGGCCATGGCACTGCCTACCCTCGTGAGTTTGACGCCTATATTGTATTGtttttttaatttatttttg
s caePb3.Scfld02_0       3704176  49 +  4147112 TATCATAAAACAAT-------------------------------CAGTAAT--------TCTAGTTAATGGATGATCATGTCAATGC-----------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9       827   0 +    24476 C
e caeJap4.Scaffold18194   553106  15 +   823664 I
e cb4.chrX              10768598   0 + 21540570 C
e caeSp111.Scaffold626     33781  36 -  1189296 I
e caeRem4.Crem_Contig0   2180908   0 -  4500979 C

a score=-6333.000000
s ce10.chrX              5415671 98 + 17718866 ttttacttttcaaatttttaaaatttattttaaaatatttatatGTGTGCCTACACGCCATGCAACTTTTTTACTTCGAGTGTACGTATCTAGCTTAC
s cb4.chrX              10768598 18 + 21540570 ---------------TTTTACTATCCA----agaa-------------------------------------------------------------gt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3704225 17 +  4147112 ------------AAATTTTAGGA---------------------------------------------------------------------GCTAat
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9       827  0 +    24476 C
e caeJap4.Scaffold18194   553106 15 +   823664 I
e caeSp111.Scaffold626     33781 36 -  1189296 I
e caeRem4.Crem_Contig0   2180908  0 -  4500979 C

a score=-3049.000000
s ce10.chrX              5415769 24 + 17718866 AATTTATACTAAAACAAGTTAATT
s cb4.chrX              10768616 22 + 21540570 a--tttttttcaaacaaccaAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180908 18 -  4500979 -----ATCCTCATATGA-GAAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3704242 22 +  4147112 a--aactatcaaaaaaatcgatat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   553121 24 +   823664 aatttctaACCAAACAGCTGGTTT
i caeJap4.Scaffold18194 I 15 C 0
e caeAng1.scafRNAPATH9       827  0 +    24476 C
e caeSp111.Scaffold626     33781 36 -  1189296 I

a score=-4864.000000
s ce10.chrX              5415793 2 + 17718866 CA-
s cb4.chrX              10768638 2 + 21540570 TT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2180926 2 -  4500979 AC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3704264 2 +  4147112 ct-
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   553145 1 +   823664 T--
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9       827 2 +    24476 -CG
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     33781 36 -  1189296 I

a score=2369396.000000
s ce10.chrX              5415795 2964 + 17718866  
s cb4.chrX              10768640 2895 + 21540570  
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   2180928 2912 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626     33817 2898 -  1189296  
i caeSp111.Scaffold626  I 36 C 0
s caePb3.Scfld02_0       3704268 2867 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   553146 2930 +   823664  
i caeJap4.Scaffold18194 C 0 I 11
s caeAng1.scafRNAPATH9       829 2800 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-827.000000
s ce10.chrX              5418759 35 + 17718866 AACCATGGTCTGATATCTACCACATATTGTTTACT
s caeAng1.scafRNAPATH9      3629  5 +    24476 aaccA------------------------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3707135  0 +  4147112 C
e caeJap4.Scaffold18194   556076 11 +   823664 I
e cb4.chrX              10771535 16 + 21540570 I
e caeSp111.Scaffold626     36715  0 -  1189296 C
e caeRem4.Crem_Contig0   2183840  2 -  4500979 I

a score=0.000000
s ce10.chrX              5418794 32 + 17718866 TGGCTTGACAAAAAAAGGAGGTTTACATAAGA
e caeAng1.scafRNAPATH9      3634  0 +    24476 C
e caePb3.Scfld02_0       3707135  0 +  4147112 C
e caeJap4.Scaffold18194   556076 11 +   823664 I
e cb4.chrX              10771535 16 + 21540570 I
e caeSp111.Scaffold626     36715  0 -  1189296 C
e caeRem4.Crem_Contig0   2183840  2 -  4500979 I

a score=-7052.000000
s ce10.chrX              5418826 101 + 17718866 GCGGCACGGTAGCTGTCGAATCATTATATCAGTTAGGGTCCCGAGTTTGACATCATCTCACAAAAGGCCCCTAAACGTGGGTTCGTGGCATAAATTATACG
s caeSp111.Scaffold626     36715  11 -  1189296 -------------tatcgaat------------------------------------------------------------ttc-----------------
i caeSp111.Scaffold626  C 0 C 0
s caeAng1.scafRNAPATH9      3634  19 +    24476 -------AGTAATTCTTCCACCTCTA---------------------------------------------------------------------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3707135   0 +  4147112 C
e caeJap4.Scaffold18194   556076  11 +   823664 I
e cb4.chrX              10771535  16 + 21540570 I
e caeRem4.Crem_Contig0   2183840   2 -  4500979 I

a score=0.000000
s ce10.chrX              5418927 2 + 17718866 CT
e caeAng1.scafRNAPATH9      3653 0 +    24476 C
e caePb3.Scfld02_0       3707135 0 +  4147112 C
e caeJap4.Scaffold18194   556076 11 +   823664 I
e cb4.chrX              10771535 16 + 21540570 I
e caeSp111.Scaffold626     36726 0 -  1189296 C
e caeRem4.Crem_Contig0   2183840 2 -  4500979 I

a score=-2744.000000
s ce10.chrX              5418929 10 + 17718866 AAA----CTTTTAC
s cb4.chrX              10771551 10 + 21540570 aaa----tttttgc
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2183842  9 -  4500979 aaa----agtttA-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     36726  6 -  1189296 -------catttt-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3707135 13 +  4147112 aagtttttttttg-
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9      3653  6 +    24476 -------CTTTGA-
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   556076 11 +   823664 I

a score=703228.000000
s ce10.chrX              5418939 1148 + 17718866  
s cb4.chrX              10771561 1100 + 21540570  
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2183851 1104 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     36732 1100 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3707148 1103 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   556087 1233 +   823664  
i caeJap4.Scaffold18194 I 11 I 7
s caeAng1.scafRNAPATH9      3659 1072 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-11940.000000
s ce10.chrX              5420087 33 + 17718866 -------GAAAAAGGAGAAAAACCGCTTATACCAAAGTCT---------
s caeRem4.Crem_Contig0   2184956 33 -  4500979 -------aacaatgaaattcaTGCATCTCTACCAAATGAT---------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     37832 27 -  1189296 -------------GAAAGAATCGAGTCAATGCCAAAAGAT---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3708251 27 +  4147112 -------------GAAGGGTTTGCTACATTTCCGGCTGAT---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   557327 30 +   823664 -------AAAACAGAGCTTGTTGTGTCTTTGAAAGAC------------
i caeJap4.Scaffold18194 I 7 C 0
s caeAng1.scafRNAPATH9      4731 49 +    24476 tgaagtgaAGAATGAAACTTTAGAACcagttcagaaaaaagaagtagAT
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10772661 27 + 21540570 I

a score=560236.000000
s ce10.chrX              5420120 671 + 17718866  
s cb4.chrX              10772688 671 + 21540570  
i cb4.chrX              I 27 I 7
s caeRem4.Crem_Contig0   2184989 665 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626     37859 674 -  1189296  
i caeSp111.Scaffold626  C 0 I 18
s caePb3.Scfld02_0       3708278 669 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18194   557357 667 +   823664  
i caeJap4.Scaffold18194 C 0 I 12
s caeAng1.scafRNAPATH9      4780 663 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=0.000000
s ce10.chrX              5420791 14 + 17718866 TACAAAACTAAATG
e caeAng1.scafRNAPATH9      5443  0 +    24476 C
e caePb3.Scfld02_0       3708947 29 +  4147112 I
e caeJap4.Scaffold18194   558024 12 +   823664 I
e cb4.chrX              10773359  7 + 21540570 I
e caeSp111.Scaffold626     38533 18 -  1189296 I
e caeRem4.Crem_Contig0   2185654  7 -  4500979 I

a score=-4701.000000
s ce10.chrX              5420805 34 + 17718866 GACAATACACTTTACTCttttaaaataatataat
s cb4.chrX              10773366 11 + 21540570 --------------TTTAGTTGAAT---------
i cb4.chrX              I 7 I 1
s caeRem4.Crem_Contig0   2185661 20 -  4500979 --------------cttttttcaaattttataaa
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold18194   558036 18 +   823664 ----------------ctttgaaaacattGTATT
i caeJap4.Scaffold18194 I 12 I 2
s caeAng1.scafRNAPATH9      5443 14 +    24476 ---------------ttttttgaaagaat-----
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947 29 +  4147112 I
e caeSp111.Scaffold626     38533 18 -  1189296 I

a score=-742.000000
s ce10.chrX              5420839 21 + 17718866 aaatttaaaCTTTTCTTCTAG
s caeRem4.Crem_Contig0   2185681 15 -  4500979 aaat------tttgtttctaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   558056 20 +   823664 gaat-tcaatattcttgccgg
i caeJap4.Scaffold18194 I 2 I 1
s caeAng1.scafRNAPATH9      5457  7 +    24476 --------------tttctga
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947 29 +  4147112 I
e cb4.chrX              10773377  1 + 21540570 I
e caeSp111.Scaffold626     38533 18 -  1189296 I

a score=-6878.000000
s ce10.chrX              5420860  97 + 17718866 TATCAATTATGGAATTTAAGTTATTTAAATTAAT-------TGGAAACCAATATCTTC---------------------------CCTACGT-------AAACAGGTTCAAACCGTCTAGAAAAACGAAAGTAGGGGG
s caeJap4.Scaffold18194   558077 138 +   823664 taccacatgcgcccgcgaaagttttataatagacgcagacatagcgacacatgtctgcggcgacacacccgctcttattttttgatctacgttcagttgaattcagttgaattcagttgaaaagacctgattgggcgg
i caeJap4.Scaffold18194 I 1 I 134
s caeAng1.scafRNAPATH9      5464  46 +    24476 ---------------------------aaaaaat---------------------------------------------------cataaat--------------ttcagatcattcttcatattgaaaatgtgagt
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947  29 +  4147112 I
e cb4.chrX              10773377   1 + 21540570 I
e caeSp111.Scaffold626     38533  18 -  1189296 I
e caeRem4.Crem_Contig0   2185696   0 -  4500979 C

a score=-1994.000000
s ce10.chrX              5420957 128 + 17718866 CCGGCCATCTAAAACCAGAGAGAACCGCTATATATTTTGTAATGTTATGAC-TCTTCGGAAAATTTGTGAAACCACTAAAAATAAGTTTTTAGGTAGAAGCATGGCCGGCACTGTACATTTGTTTTAAC
s caeAng1.scafRNAPATH9      5510  58 +    24476 --------ttcaaAC-----------------GATTGTTTGCCGTTAAAGCGTCATCGGAGGTTTCGAGA-----Ccaacaatca-----------------------------------------aat
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947  29 +  4147112 I
e caeJap4.Scaffold18194   558215 134 +   823664 I
e cb4.chrX              10773377   1 + 21540570 I
e caeSp111.Scaffold626     38533  18 -  1189296 I
e caeRem4.Crem_Contig0   2185696   0 -  4500979 C

a score=-5357.000000
s ce10.chrX              5421085 140 + 17718866 TGAAATTTTGTTTTCTTCAATTAAAAACGCAAGTGGAGTTAAAAACAGATTGAACGAAATCAGGCTATGCTGGGAAATTATTTTTGAAAATAAACAAAAAAGTGTTACCTATTTATGATGAGCAACGGTCCTTGTTTATT
s caeJap4.Scaffold18194   558349 106 +   823664 tgaaattgaataatttggaaaccaaaatgaaagtcGCA-TAGCATTAAAttgagcggagcgcgttt---------gactattttggcgggccgacaata----gttaacttttt----------------cttttt----
i caeJap4.Scaffold18194 I 134 C 0
s caeAng1.scafRNAPATH9      5568  59 +    24476 caaaatctgg-----tgaaaatgaaactgCAAAGTGAG-TAATACTAGA--------------------------ACCTACTTCT------------------ATTATT-------------------------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947  29 +  4147112 I
e cb4.chrX              10773377   1 + 21540570 I
e caeSp111.Scaffold626     38533  18 -  1189296 I
e caeRem4.Crem_Contig0   2185696   0 -  4500979 C

a score=-369.000000
s ce10.chrX              5421225 3 + 17718866 AAA
s caeAng1.scafRNAPATH9      5627 1 +    24476 A--
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3708947 29 +  4147112 I
e caeJap4.Scaffold18194   558455 0 +   823664 C
e cb4.chrX              10773377 1 + 21540570 I
e caeSp111.Scaffold626     38533 18 -  1189296 I
e caeRem4.Crem_Contig0   2185696 0 -  4500979 C

a score=755.000000
s ce10.chrX              5421228 1 + 17718866 T
s cb4.chrX              10773378 1 + 21540570 T
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold626     38551 1 -  1189296 C
i caeSp111.Scaffold626  I 18 C 0
s caePb3.Scfld02_0       3708976 1 +  4147112 T
i caePb3.Scfld02_0      I 29 C 0
s caeJap4.Scaffold18194   558455 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9      5628 1 +    24476 T
i caeAng1.scafRNAPATH9  C 0 C 0
e caeRem4.Crem_Contig0   2185696 0 -  4500979 C

a score=497060.000000
s ce10.chrX              5421229 584 + 17718866  
s cb4.chrX              10773379 584 + 21540570  
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2185696 587 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold626     38552 587 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3708977 585 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   558456 593 +   823664  
i caeJap4.Scaffold18194 C 0 I 30
s caeAng1.scafRNAPATH9      5629 470 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-3644.000000
s ce10.chrX              5421813 33 + 17718866 TACTGATTTTTCATACTTTACAATTTTTATTCC
s cb4.chrX              10773969 27 + 21540570 taatgattttcaaatagttATTATCCT------
i cb4.chrX              I 6 I 315
s caeSp111.Scaffold626     39139 20 -  1189296 ---cattttttgaaagattataa----------
i caeSp111.Scaffold626  C 0 I 7
s caeAng1.scafRNAPATH9      6099  4 +    24476 ----AATT-------------------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3709562  0 +  4147112 C
e caeJap4.Scaffold18194   559049 30 +   823664 I
e caeRem4.Crem_Contig0   2186283 33 -  4500979 I

a score=0.000000
s ce10.chrX              5421846 1 + 17718866 T
e caeAng1.scafRNAPATH9      6103 0 +    24476 C
e caePb3.Scfld02_0       3709562 0 +  4147112 C
e caeJap4.Scaffold18194   559049 30 +   823664 I
e cb4.chrX              10773996 315 + 21540570 I
e caeSp111.Scaffold626     39159 7 -  1189296 I
e caeRem4.Crem_Contig0   2186283 33 -  4500979 I

a score=0.000000
s ce10.chrX              5421847 22 + 17718866 ATATGttttatttttatatatt
e caeAng1.scafRNAPATH9      6103  0 +    24476 C
e caePb3.Scfld02_0       3709562  0 +  4147112 C
e caeJap4.Scaffold18194   559049 30 +   823664 I
e cb4.chrX              10773996 315 + 21540570 I
e caeSp111.Scaffold626     39159  7 -  1189296 I
e caeRem4.Crem_Contig0   2186283 33 -  4500979 I

a score=393674.000000
s ce10.chrX              5421869 330 + 17718866 ttttt-CCAGGCTCAAAATATGGAAATCCTGTGGAAGGAGGAAACTTCATTACCCAAGATGTCACTCAGTTCGACCCCTCATTTTTCAAAATTTCAAAAAGTGAAGCAGAATTGATTGACCCACAACAAAGATTGCTGCTGGAATGTGTT-------------------------------------------------CAAGAATGCTTGGAAAACAGCGGTGTTATTGAAACGAGCAACGTTGGAGTGTTTGTAGGATTGATGGAAAAAGAGTATCAGGATATGATGGAGTCATCTTCAATTTTGGCAATGTTGGGCTCAATGGCAGCTGTGATTGCAGGGCGTGTGAATTACATTTTTGGTTGTTATGGTAAGA------TTT
s cb4.chrX              10774311 327 + 21540570 ------ttaggatCAAAATACGGCAACCCTGTGGAAGGAGGGAACTTCATCACACAGGACGTCACCCAGTTTGACCCTgcattctttaaaatttcaaagagtgAAGCCGAATTAATCGATCCTCAGCAAAGAATTCTTTTGGAATGTGTA-------------------------------------------------CAGGAATGCCTGGAGAATAGTGGTGTCACCGAGACAAGCAATGTTGGAGTGTTCGTTGGTTTGATGGAAAAAGAGTATCAAGATATGATGGAGTCCTCCTCGATTCTTGCTATGCTCGGATCTATGGCAGCTGTGATTGCTGGACGTGTGAATTATGTCTTTGGATCTTTCGGTATGTTG----TTT
i cb4.chrX              I 315 I 1
s caeRem4.Crem_Contig0   2186316 335 -  4500979 ACGC--TCAGGTTCAAAATATGGAAACCCAGTTGAAGGTGGAAACTTTATCACTCAAGATGTTACACAGTTCGATCCTgcattcttcaaaatttctaagAGTGAAGCTGAACTTATCGATCCTCAGCAAAGAATACTATTGGAATGTGTG-------------------------------------------------CAAGAGTGTTTAGAAAACAGTGGTGTCACAGAAACGAGTAGTGTTGGAGTATTCGTCGGATTAATGGAGAAAGAATATCAAGATATGATGGAGTCGTCTTCAATTCTTGCTATGCTGGGATCTATGGCTGCTGTTATTGCAGGTCGTGTAAATTACGTATTTGGATGCTATGGTAGgttgaaaaatt
i caeRem4.Crem_Contig0  I 33 I 1
s caeSp111.Scaffold626     39166 331 -  1189296 attttttcaggatcaAAATATGGAAATCCGGTTGAAGGAGGGAATTTTATAACCCAAGACGTTACTCAATTCGATCCAGCATTCTTCAAGATCTCTAAAAGTGAAGCTGAGTTGATTGATCCACAACAAAGAATTCTGCTGGAATGTGTT-------------------------------------------------CAAGAATGCTTGGAAAATAGTGGTGTTACCGAGACAAGTAACGTTGGAGTGTTCGTCGGtttaatggaaaaagagtATCAAGATATGATGGAATCCTCTTCGATTCTTGCCATGCTGGGGTCAATGGCAGCAGTGATTGCTGGCCGTATCAACTATGTTTTTGGATGTTATGGTTCGT------TTT
i caeSp111.Scaffold626  I 7 I 18
s caePb3.Scfld02_0       3709562 325 +  4147112 ------TCCGGAACTAAATACGGAAATCCAGTTGAAGGAGGAAACTTCATCACTCAAGATGTCACACAATTTGATCCagcctttttcaaaatttccaagagTGAAGCGGAATTGATTGATCCACAACAACGAATTCTGTTGGAATGTGTT-------------------------------------------------CAAGAATGTTTGGAAAACAGTGGAGTAACAGAAACCAGTAACGTTGGAGTCTTTGTTGGGTTAATGGAGAAAGAATACCAAGATATGATGGAGTCATCTTCAATTCTCGCTATGTTAGGATCTATGGCAGCTGTAATTGCAGGCCGTGTTAATTATGTTTTTGGATGTTATGGTGAGt------att
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   559079 331 +   823664 TTATT-TCAGGAACAAAGTACGGAAATTCGGTGGAAGGTGGCAACTTTATTAGCCAGGACATCAGCGAATTCGATCCAGCATTCTTCAAGATATCTAAAAGTGAAGCGGAATTTATTGATCCCCAGCAACGAATCCTTCTTGAATGCGTA-------------------------------------------------CAAgaatgttttgaaaatagcggTGTCACTGAGACGAATGACGTGGGAGTATTTGTCGGTTTAATGGAAAAGGAATACCAAGACATGGTGGAGTCGTCATCGATTCTTTCAATGCTCGGATCTATGGCTGCTGTTATTGCGGGGCGTATCAATTATGTGTTTGGCTGCCATGGTAAAAC-----ATT
i caeJap4.Scaffold18194 I 30 C 0
s caeAng1.scafRNAPATH9      6103 365 +    24476 ---------------AAGTATGGAAATCCGGTTGAAGGTGGAAACTTTATTCAGCAAGATGTTTCACAGTTTGACCCagcgtttttcaaaatttcaaaaagtgaagCAGAATTGACTGATCCTCAACAAAGAATTCTTCTGGAATGTGTTCAGGTGAGAAAATCTGgcaattttgtatttttaaaaactaacGTAATTCCAGGAATGTCTCGAGAACAGTGGTGTTACTGAAACATCCAATGTCGGTGTTTTTGTCGGTTTAATGGAAAAAGAATACCAAGATATGATGGAATCCTCCTCAATTTTGTCAATGTTGGGATCAATGGCTGCTGTTATCGCAGGAAGAGTAAATTATGTATTTGGATGTTATGGTAACT------TTT
i caeAng1.scafRNAPATH9  C 0 I 29

a score=422.000000
s ce10.chrX              5422199 1 + 17718866 T
s cb4.chrX              10774639 1 + 21540570 T
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2186652 1 -  4500979 c
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3709887 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18194   559410 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caeSp111.Scaffold626     39497 18 -  1189296 I

a score=1952.000000
s ce10.chrX              5422200 6 + 17718866 TAAATT
s cb4.chrX              10774640 6 + 21540570 TAGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2186653 6 -  4500979 tagatC
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   559411 6 +   823664 Taagtt
i caeJap4.Scaffold18194 C 0 I 28
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeSp111.Scaffold626     39497 18 -  1189296 I

a score=-593.000000
s ce10.chrX              5422206 4 + 17718866 ACAA
s cb4.chrX              10774646 4 + 21540570 ACAA
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   2186659 2 -  4500979 AA--
i caeRem4.Crem_Contig0  C 0 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeJap4.Scaffold18194   559417 28 +   823664 I
e caeSp111.Scaffold626     39497 18 -  1189296 I

a score=120.000000
s ce10.chrX              5422210 4 + 17718866 TATA
s caeRem4.Crem_Contig0   2186661 4 -  4500979 TGTG
i caeRem4.Crem_Contig0  C 0 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeJap4.Scaffold18194   559417 28 +   823664 I
e cb4.chrX              10774650 10 + 21540570 I
e caeSp111.Scaffold626     39497 18 -  1189296 I

a score=0.000000
s ce10.chrX              5422214 702 + 17718866  
e caeAng1.scafRNAPATH9      6468  29 +    24476 I
e caePb3.Scfld02_0       3709888  30 +  4147112 I
e caeJap4.Scaffold18194   559417  28 +   823664 I
e cb4.chrX              10774650  10 + 21540570 I
e caeSp111.Scaffold626     39497  18 -  1189296 I
e caeRem4.Crem_Contig0   2186665   0 -  4500979 C

a score=29.000000
s ce10.chrX              5422916 3 + 17718866 AAC
s caeRem4.Crem_Contig0   2186665 3 -  4500979 AGT
i caeRem4.Crem_Contig0  C 0 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeJap4.Scaffold18194   559417 28 +   823664 I
e cb4.chrX              10774650 10 + 21540570 I
e caeSp111.Scaffold626     39497 18 -  1189296 I

a score=819.000000
s ce10.chrX              5422919 3 + 17718866 ATA
s caeRem4.Crem_Contig0   2186668 3 -  4500979 ATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     39515 3 -  1189296 ATA
i caeSp111.Scaffold626  I 18 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeJap4.Scaffold18194   559417 28 +   823664 I
e cb4.chrX              10774650 10 + 21540570 I

a score=50.000000
s ce10.chrX              5422922 3 + 17718866 TTG
s cb4.chrX              10774660 3 + 21540570 TTA
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2186671 2 -  4500979 -CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     39518 3 -  1189296 TTG
i caeSp111.Scaffold626  C 0 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I
e caeJap4.Scaffold18194   559417 28 +   823664 I

a score=187.000000
s ce10.chrX              5422925 1 + 17718866 A
s cb4.chrX              10774663 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2186673 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     39521 1 -  1189296 G
i caeSp111.Scaffold626  C 0 I 1
s caeJap4.Scaffold18194   559445 1 +   823664 A
i caeJap4.Scaffold18194 I 28 C 0
e caeAng1.scafRNAPATH9      6468 29 +    24476 I
e caePb3.Scfld02_0       3709888 30 +  4147112 I

a score=178661.000000
s ce10.chrX              5422926 140 + 17718866 TTTCAGGACCATCTGTTACAATTGACACCGCCTGCAGTTCTTCATTAGTGGCTCTGGAGATGGCAATCAATGCTCTTCTCGACAACCGATGTTCAAAAGTCATTGTTGCTGGTGTGAATTTAATCTTAAATGAGAAAGG---T
s cb4.chrX              10774664 140 + 21540570 TTTCAGGACCATCTGTGACTATTGACACTGCATGCAGTTCCTCTCTTGTTGCTTTAGAAATGGCTGTCAATGCCTTGTTGGATAACAGATGTTCCAAAGTTATTGTGGCTGGAgtcaatttaattttaaatgaGAAGGG---T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2186674 143 -  4500979 TTCCAGGACCCTCCGTGACTATTGACACTGCATGCAGTTCCTCTCTTGTTGCTCTGGAAATGGCTGTGAATGCTCTTCTTGATAATCGGTGCTCCAAGGTTATTGTTGCCGGAGTAAATCtaattttgaatgagaaaGGTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     39523 140 -  1189296 TTACAGGACCATCTGTCACTATCGACACCGCTTGTAGTTCATCTCTAGTCGCTTTGGAAATGGCAGTGAATGCACTTCTTGACAATCGTTGTTCTAAAGTTATTGTTGCTGGAGTgaatttgattctgaatgaGAAAgg---t
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3709918 140 +  4147112 tttcaggacCATCTGTCACCATTGACACTGCTTGTAGTTCGTCTCTTGTTGCTTTGGAAATGGCCGTGAATGCACTTCTGGATAACCGTTGTTCGAAAGTTATAGTTGCCGGAgtcaatttgattttgaacgaGAAAGG---T
i caePb3.Scfld02_0      I 30 I 31
s caeJap4.Scaffold18194   559446 140 +   823664 TTATAGGTCCATCGGTGACTATTGACACAGCATGTAGTTCTTCTCTTGTGGCTCTTGAGATGGCGATCAATGCTCTTTTAGATCATCGCTGCTCACATGCGATTGTGGCTGGTGTAAATTTGATTTTGAATGAAAAAGG---C
i caeJap4.Scaffold18194 C 0 I 5
s caeAng1.scafRNAPATH9      6497 140 +    24476 TTTCAGGACCATCTGTCACAATTGACACTGCTTGTAGTTCATCATTGGTTGCTTTGGAGATGGCTGTTAATGCTCTTTTAGATAATCGCTGTGAAAAAGTTATCGTTGCTGGTGTaaacttgattttgaatgagaGAGG---T
i caeAng1.scafRNAPATH9  I 29 C 0

a score=-2026.000000
s ce10.chrX              5423066 19 + 17718866 TTGTCCAATTAACAAAAAA
s cb4.chrX              10774804 19 + 21540570 TTGTATGAGAGTCTCAAAT
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   2186817 19 -  4500979 TTATTTAACTGAATAAGAT
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626     39663 19 -  1189296 atttttatatttttaagaT
i caeSp111.Scaffold626  C 0 I 11
s caeJap4.Scaffold18194   559591 19 +   823664 TTTTAATATTAGTGAAAAT
i caeJap4.Scaffold18194 I 5 I 93
s caeAng1.scafRNAPATH9      6637  9 +    24476 ----------AAGAGAAAC
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3710058 31 +  4147112 I

a score=2060953.000000
s ce10.chrX              5423085 2010 + 17718866  
s cb4.chrX              10774835 1998 + 21540570  
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2186846 1998 -  4500979  
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626     39693 1998 -  1189296  
i caeSp111.Scaffold626  I 11 I 34
s caePb3.Scfld02_0       3710089 1998 +  4147112  
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold18194   559703 1999 +   823664  
i caeJap4.Scaffold18194 I 93 C 0
s caeAng1.scafRNAPATH9      6646 2046 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=482.000000
s ce10.chrX              5425095 3 + 17718866 GGA
s cb4.chrX              10776833 3 + 21540570 AGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2188844 3 -  4500979 GCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3712087 3 +  4147112 AGA
i caePb3.Scfld02_0      C 0 I 34
s caeJap4.Scaffold18194   561702 3 +   823664 AAA
i caeJap4.Scaffold18194 C 0 I 1
s caeAng1.scafRNAPATH9      8692 3 +    24476 aca
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     41691 34 -  1189296 I

a score=910.000000
s ce10.chrX              5425098 1 + 17718866 A
s cb4.chrX              10776836 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2188847 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   561706 1 +   823664 A
i caeJap4.Scaffold18194 I 1 C 0
s caeAng1.scafRNAPATH9      8695 1 +    24476 a
i caeAng1.scafRNAPATH9  C 0 I 25
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e caeSp111.Scaffold626     41691 34 -  1189296 I

a score=273.000000
s ce10.chrX              5425099 1 + 17718866 A
s cb4.chrX              10776837 1 + 21540570 A
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2188848 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 30
e caeAng1.scafRNAPATH9      8696 25 +    24476 I
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e caeJap4.Scaffold18194   561707 0 +   823664 C
e caeSp111.Scaffold626     41691 34 -  1189296 I

a score=852.000000
s ce10.chrX              5425100 8 + 17718866 TGACATGT
s cb4.chrX              10776841 8 + 21540570 GGACATGT
i cb4.chrX              I 3 I 26
s caeJap4.Scaffold18194   561707 8 +   823664 GAACACAc
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9      8696 25 +    24476 I
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e caeSp111.Scaffold626     41691 34 -  1189296 I
e caeRem4.Crem_Contig0   2188849 30 -  4500979 I

a score=-538.000000
s ce10.chrX              5425108 62 + 17718866 Attaaagatggagtggaaatagtggagatttggtctaaattgatttataggagttcaatacg
s caeJap4.Scaffold18194   561715 41 +   823664 atcgaaatt-------------------tttgtttttttttgtttctca--agtGAAATGTG
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9      8696 25 +    24476 I
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e cb4.chrX              10776849 26 + 21540570 I
e caeSp111.Scaffold626     41691 34 -  1189296 I
e caeRem4.Crem_Contig0   2188849 30 -  4500979 I

a score=0.000000
s ce10.chrX              5425170 358 + 17718866 gctttataatacagtctagcatgatcacagtgaaatacttcaaaatttgtagatttttcaaaaagttttcagtcaaagtatttgtaagctgccaaatttcttgaaaaattaaactaaggtatttataaaatgtttgcaggtctgaactcctataatcttttgatacaaagattgaaaaaaaagtattcatagaaattgtagtgataaaattatttttggtcgatttctatgataagggaaagctaagtttttggcatcatttttttgaaatTTGTTTGCACATAATAAATGTCAAAAAGTAgttttaaaaaaatttccccactgacgatactccaccttcaaCGTGTAATCTATATTA
e caeAng1.scafRNAPATH9      8696  25 +    24476 I
e caePb3.Scfld02_0       3712090  34 +  4147112 I
e caeJap4.Scaffold18194   561756   0 +   823664 C
e cb4.chrX              10776849  26 + 21540570 I
e caeSp111.Scaffold626     41691  34 -  1189296 I
e caeRem4.Crem_Contig0   2188849  30 -  4500979 I

a score=160.000000
s ce10.chrX              5425528 3 + 17718866 CGT
s caeJap4.Scaffold18194   561756 3 +   823664 CAT
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9      8696 25 +    24476 I
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e cb4.chrX              10776849 26 + 21540570 I
e caeSp111.Scaffold626     41691 34 -  1189296 I
e caeRem4.Crem_Contig0   2188849 30 -  4500979 I

a score=273.000000
s ce10.chrX              5425531 1 + 17718866 A
s caeJap4.Scaffold18194   561759 1 +   823664 A
i caeJap4.Scaffold18194 C 0 I 1
s caeAng1.scafRNAPATH9      8721 1 +    24476 a
i caeAng1.scafRNAPATH9  I 25 C 0
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e cb4.chrX              10776849 26 + 21540570 I
e caeSp111.Scaffold626     41691 34 -  1189296 I
e caeRem4.Crem_Contig0   2188849 30 -  4500979 I

a score=-1724.000000
s ce10.chrX              5425532 2 + 17718866 TT-
s caeRem4.Crem_Contig0   2188879 2 -  4500979 tt-
i caeRem4.Crem_Contig0  I 30 C 0
s caeJap4.Scaffold18194   561761 1 +   823664 T--
i caeJap4.Scaffold18194 I 1 C 0
s caeAng1.scafRNAPATH9      8722 2 +    24476 -tg
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3712090 34 +  4147112 I
e cb4.chrX              10776849 26 + 21540570 I
e caeSp111.Scaffold626     41691 34 -  1189296 I

a score=422.000000
s ce10.chrX              5425534 1 + 17718866 T
s caeRem4.Crem_Contig0   2188881 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3712124 1 +  4147112 T
i caePb3.Scfld02_0      I 34 C 0
s caeJap4.Scaffold18194   561762 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9      8724 1 +    24476 t
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10776849 26 + 21540570 I
e caeSp111.Scaffold626     41691 34 -  1189296 I

a score=172249.000000
s ce10.chrX              5425535 177 + 17718866 TTGTAGATGATTTCTCAAGATAAGCGGGTCCTGTCCAATATCTACGTGCTCAA---GGATGCAAAGGGATTGGAAATTCCAACTATCAGGATGCACAAAAAATCTACATTGCTATCTTCTCAAGAAGCCAGCATTGTTGCAGCAAAAACTTTACAAATGGCTGTCAGACACAAAGTAATT
s cb4.chrX              10776875 175 + 21540570 tttcagatgatcTCTCAAGAAAAACAAGTGTTATCCAACATTTACGTGCTCAA---AGATGCCAAGGGATTGGAAGTGCCAACTATCAGAATGCATAAGAAATCTACGCTGTTGTCATCTCAAGAAACCAGTCTGGTGGCTGCAAAAACGCTTCAAATGGCAGTCAGAAACAAGGTAT--
i cb4.chrX              I 26 C 0
s caeRem4.Crem_Contig0   2188882 175 -  4500979 ttcCAGATGATCTCTCAAGAGAAACGTGTTCTTTCTAATATTTATGTGCTGAA---GGATGCTAAGGGATTGGAAGTTCCAACTGTCCGAATGCACAAGAAATCCACTTTGTTATCTTCTCAGGAAGCCGGTATTGTTGCAGCCAGAACTCTTCAAATGGCTGTTAGAAGCAAGGTGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     41725 175 -  1189296 tttcagatgatttcCAATGAGAAACGAGTTCtatcaaacatttttgttctgaa---agatGCTAAAGGATTAGAGATTCCAACTGTCAGAATGCATAAGAAATCTACATTATTATCATCTCAAGCAGCTAGTCTTGTTTCTGCAAAAACACTACAGATGGCTGTCAGAAACAaggtaa--
i caeSp111.Scaffold626  I 34 C 0
s caePb3.Scfld02_0       3712125 177 +  4147112 TTACAGATgatttctcatgaaaaacaagttctCTCGAACATATACGTGTTGAA---AGATGCGAAGGGACTTGAAGTTCCAACAGTCAGAATGCACAAAAAATCCACTTTGTTGTCATCTCAAGAAGCTAGTCTTGTTGCTGCCAAAACTCTGCAAATGGCCGTTAGAAGCAAGGTAACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   561763 175 +   823664 GTTTAGATGCTTTCTGATGACAAGCAGGTTCTGTCCAACATCTATGTTCTGAA---AGATGCAAAGGGATTGGAAGTGCCGACAATTAGAATGCACAAAAAGTCAACCTTGCTCTCGTCTCAGGAAGCAAGTGTCATTGCTGCTAAAACTCTTCAAATGGATATCAGAAACAAGGTAA--
i caeJap4.Scaffold18194 C 0 I 237
s caeAng1.scafRNAPATH9      8725 156 +    24476 tttcagataatCTCTATGGACAAGAAAATATTATCGAGTATTTATGTCACAAAATCAGATGC---AGGGTTGCATTTACCAGCTGTGAGAATGCATAAAAAATCGACACTTTTATCATCACAAGAAGCTCAAGAAATTGCTGTTCGAACATTGCAGAtg---------------------
i caeAng1.scafRNAPATH9  C 0 C 0

a score=279291.000000
s ce10.chrX              5425712 459 + 17718866  
s cb4.chrX              10777050 448 + 21540570  
i cb4.chrX              C 0 I 11
s caeRem4.Crem_Contig0   2189057 462 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626     41900 449 -  1189296  
i caeSp111.Scaffold626  C 0 I 39
s caePb3.Scfld02_0       3712302 454 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   562175 450 +   823664  
i caeJap4.Scaffold18194 I 237 I 2
s caeAng1.scafRNAPATH9      8881 425 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-14101.000000
s ce10.chrX              5426171 30 + 17718866 CTGAAGCG--CCATCTAGTT--CCTCGGAAT---------GTT
s cb4.chrX              10777509 25 + 21540570 aaaaaact--cga--aaatg--aCTTGGAAA------------
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   2189527 29 -  4500979 caaaaattggctg--aaatgaaaaacgaaac------------
i caeRem4.Crem_Contig0  I 8 C 0
s caePb3.Scfld02_0       3712757 34 +  4147112 caaaATTC--CGA--TAGTA--TCTCAGAATTCATCAGtc---
i caePb3.Scfld02_0      I 1 I 13
s caeJap4.Scaffold18194   562627 25 +   823664 GAAGAGCA--AGA--AAATG--TGGTTGAAA------------
i caeJap4.Scaffold18194 I 2 I 20
s caeAng1.scafRNAPATH9      9306 13 +    24476 ----------TAG--Aaatg--ttatc----------------
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     42349 39 -  1189296 I

a score=238266.000000
s ce10.chrX              5426201 275 + 17718866 CAAATCACCTT-GAAGAATC---TGACGCCACAGTTGACAGAACCGAGATCCGACGAAAAGTTTCGTTAGCTGTTTTTGATCTGGCCACTGAAACACTGTCTGCAGAAGATTTACAGTCAAAAGGTTTCACTGAATTGGGAATGGACTCTCTGTCGATTGTTGACTTTGTTAATAGACTGAACGACAAATACTTCCCGGACGATGAAATCACTGCAAGTGATATTTTCGATTATCCAACTGTCGATGAACTTTCTGATCATATTGTCAGAAAGAAAAGT
s cb4.chrX              10777534 269 + 21540570 CACAGCTCCAA-CAAGAATC---TGA------GGTGGATAGAAACGATATTCGCCGTAAAATTTCGTCTGCAGTATTTGATTTGGCTACTGACAGCTTAACTTCTGAAGATTTGGACTCCAAAGGATTCACTGATCTTGGAATGGATTCTCTCTCAATTGTTGACTTTGTGAATCGATTAAATGAGAAATATTTCCCAGAAGATGAAATCACCGCAAGTGATGTGTTTGATTATCCCACAGTTGATGAACTGGCAGATCACATTGTAAGGAAGAAAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2189556 268 -  4500979 cAGTGCACCAA--AGGAAGA---TGA------CGTTGATAGAACAGATATTCGTCGTAAAATATCCTCTGCAGTTTTTGATTTAGCAACTGAAACACTGTCTGTTGAAGATCTCGACTCCAAAGGATTTACTGAACTTGGAATGGATTCTCTTTCGATTGTTGATTTTGTAAACCGTTTGAATGAGAAATACTTCCCAGGAGATGATATCACCGCTAGTGATGTATTCGATTACCCGACTGTTGATGAACTTGCTGATCATATCGTTCGAAAGAAGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     42388 269 -  1189296 AATCACACGGA----GAAACTCATGA------AGTGGACAGAGCAGATATTCGCCGGAAAGTTTCATCAGCAGTTTTTGATCTTGCAACTGACTCATTATCTTCTGAAGATCTCGATTCAAAAGGATTCACCGAGCTTGGAATGGACTCTCTTTCTATCGTTGACTTTGTGAATCgattgaatgagaaatacTTCCCAGGAGATGATATAACTGCCAGTGATGTCTTTGACTACCCAACAGTTGATGAACTCGCAGATCATATTGTACGAAAGAAGAGT
i caeSp111.Scaffold626  I 39 C 0
s caePb3.Scfld02_0       3712804 266 +  4147112 aacaaaaccaa----aacac---CAC------AATTGACAGATCAGAGGTTCGTCGAAAAGTCTCAGCTGCAGTTTTTGACTTGGCTACTGAAACGTTGTCTTCTGAAGATTTGAACTCCAAAGGTTTCACTGAACTTGGAATGGATTCACTCTCTATTGTGGATTTTGTAAACCGATTGAATGAGAAGTATTTCCCAGGAGATGATATCACTGCTAGTGATGTATTTGATTACCCCAATGTTGATGAACTGTCAGATCATATTGTCAGGAAGAAGAGT
i caePb3.Scfld02_0      I 13 C 0
s caeJap4.Scaffold18194   562672 267 +   823664 GAAAACATCAATGTTGAAGC------------AGTGGACCGAACTGATATCCGTCGCAAGATTTCCACTGCAGTTTTTGACCTAGCAACCGAACAATTAACAGTGGAGGATCTTGACTCAAAGGGATTCACAGAGCTCGGAATGGATTCGTTGTCAATTGTGGATTTTGTTAACCGGTTGAATGAAAAGTATTTCCCTGGAGAAGAAATCACGGCCAGCGATGTTTTTGATTATCCGACGGTCGACGAACTCGCCGATCATATAACTAGGAAAAAGAGC
i caeJap4.Scaffold18194 I 20 I 95
s caeAng1.scafRNAPATH9      9319 225 +    24476 -------------------------------------aaaaaacGGATAACTGAC--------------GCTGTTTATGATTTGATAACCGATTCAATAACTAATTATGACATCGAGACAAAAGGTTTCACAGATCTTGGATTGGATTCGATGTCACTTATTGATTTCTTGAATCGATTGAATGAGAAATATTTCCCTGGAGATGATATAACTAGTGGAGATATATTTGATAATCCATCAGTGAATGAATTGGCAGATCATATTTATCAAAAGAAA---
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-29698.000000
s ce10.chrX              5426476 92 + 17718866 TCATCGGTACCACCAGCCGCTTCAGAGATTATGAAGGAGAC------CATGAACGGAA------TTTCGAC---GTCTGTTG---------ATGCAGAGCATAC------CAAATTGGAAAA
s cb4.chrX              10777803 83 + 21540570 GTTTCTTT---CCCATTGCATCCCGCATCT---GGGGAAAC------CATGAACGGAG------TGGAGAA---TCCGATCC---------AAAATGAG---CC------AGAAGTCGAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2189824 98 -  4500979 ATTTCGTT---ATCAACTGCTCCGGAATTG---GTTGCAGA------TACGGATAGAG------CTGAAAAGGTTGAGATCACTGTAAATGGAAAAGAGCACCC------TGAACTTGAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     42657 84 -  1189296 GTTTCGTT---ACCTGCACCActtaaaatt---gaagaaaatgcacttccaaatggaaaaattgatgaaac---agagaaac---------aaa----------------tgaagCTG----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713070 90 +  4147112 ATTTCTGC---GCCAGCTGCTCCAGCAGTT---CAAGAAATTTTACTCACCAATGGCA------CTGTGAC---AGAAAAGC---------CCAACGAg---cctatttttgaagtt-----
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9      9544 74 +    24476 ---Tctgg---agaagaaaaagttgatgtt---gttgaaaa------agcTATTAGTG------TTGAACA---AGAAACTG---------AAAGAAAA---CT------GGAGAT------
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   562939 95 +   823664 I

a score=307786.000000
s ce10.chrX              5426568 584 + 17718866  
s cb4.chrX              10777886 584 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2189922 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     42741 583 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713160 577 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   563034 584 +   823664  
i caeJap4.Scaffold18194 I 95 C 0
s caeAng1.scafRNAPATH9      9618 575 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=4705.000000
s ce10.chrX              5427152 4 + 17718866 AGGT
s cb4.chrX              10778470 4 + 21540570 AGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2190506 4 -  4500979 CGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     43324 4 -  1189296 AGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713737 4 +  4147112 AGGt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   563618 4 +   823664 aggt
i caeJap4.Scaffold18194 C 0 I 43
e caeAng1.scafRNAPATH9     10193 0 +    24476 C

a score=910.000000
s ce10.chrX              5427156 1 + 17718866 A
s cb4.chrX              10778474 1 + 21540570 A
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2190510 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     43328 1 -  1189296 A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713741 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9     10193 0 +    24476 C
e caeJap4.Scaffold18194   563622 43 +   823664 I

a score=-96.000000
s ce10.chrX              5427157 1 + 17718866 A
s caeRem4.Crem_Contig0   2190511 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     43329 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713742 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9     10193 0 +    24476 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e cb4.chrX              10778475 14 + 21540570 I

a score=-131.000000
s ce10.chrX              5427158 12 + 17718866 -----GAATATTGGATC
s caeRem4.Crem_Contig0   2190512 12 -  4500979 -----GAACATTTGTTC
i caeRem4.Crem_Contig0  C 0 I 25
s caeSp111.Scaffold626     43330 16 -  1189296 GTAGAGAACCTGGGTC-
i caeSp111.Scaffold626  C 0 C 0
e caeAng1.scafRNAPATH9     10193  0 +    24476 C
e caePb3.Scfld02_0       3713743  0 +  4147112 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e cb4.chrX              10778475 14 + 21540570 I

a score=475.000000
s ce10.chrX              5427170 16 + 17718866 AATCTTGAGTATTTTG
s caeSp111.Scaffold626     43346 16 -  1189296 AGTACAGTATATTTTG
i caeSp111.Scaffold626  C 0 C 0
e caeAng1.scafRNAPATH9     10193  0 +    24476 C
e caePb3.Scfld02_0       3713743  0 +  4147112 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e cb4.chrX              10778475 14 + 21540570 I
e caeRem4.Crem_Contig0   2190524 25 -  4500979 I

a score=0.000000
s ce10.chrX              5427186 394 + 17718866 TCTACAGAACTCACTCACATTGGTCTAGCCCGCAAGACTATTGTTCTGAAATTAATTAAAAATATTTCAGTGAGCTCTCTTGATTTTGAGATATAATGGAAAATATCGTTTTTAGGCAAAACTTATAGTTTTTCAAAGTTTTAAATTGAGTTTTTCAACGAAAAAATATGTTTTTCTCTAAATGTTACTTTTTTTAGAAATAATTAATACAATTTGGTACTTTAGATTTCCGATTTATTTTCAAAAAAAGTGACATTCTTTTACAATCTTTTGCAATCAAAATGTTTTTCAAAACACTTCCATTGGCTTTTTGAATGGCTTGAAGTTTATCTTATTAAACAATGGACTGTGAATTTATCGAAATTTTTATAGTACGGCTGGCTGAAATAGGTGC
e caeAng1.scafRNAPATH9     10193   0 +    24476 C
e caePb3.Scfld02_0       3713743   0 +  4147112 C
e caeJap4.Scaffold18194   563622  43 +   823664 I
e cb4.chrX              10778475  14 + 21540570 I
e caeSp111.Scaffold626     43362   0 -  1189296 C
e caeRem4.Crem_Contig0   2190524  25 -  4500979 I

a score=743.000000
s ce10.chrX              5427580 30 + 17718866 GAAACCAAGAACTCGAAGACTGCAAGACAC
s caePb3.Scfld02_0       3713743 30 +  4147112 cagaacaaaaattgataggCTGTGAGttac
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9     10193  0 +    24476 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e cb4.chrX              10778475 14 + 21540570 I
e caeSp111.Scaffold626     43362  0 -  1189296 C
e caeRem4.Crem_Contig0   2190524 25 -  4500979 I

a score=-1147.000000
s ce10.chrX              5427610 17 + 17718866 ATAGACGAAATACGGTA
s cb4.chrX              10778489 17 + 21540570 ATAAATACAAAACGTTA
i cb4.chrX              I 14 I 2
s caePb3.Scfld02_0       3713773 12 +  4147112 ----atttttattgtt-
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9     10193  0 +    24476 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e caeSp111.Scaffold626     43362  0 -  1189296 C
e caeRem4.Crem_Contig0   2190524 25 -  4500979 I

a score=546.000000
s ce10.chrX              5427627 1 + 17718866 T
s cb4.chrX              10778508 1 + 21540570 T
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2190549 1 -  4500979 t
i caeRem4.Crem_Contig0  I 25 C 0
s caePb3.Scfld02_0       3713785 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeAng1.scafRNAPATH9     10193 0 +    24476 C
e caeJap4.Scaffold18194   563622 43 +   823664 I
e caeSp111.Scaffold626     43362 0 -  1189296 C

a score=3575.000000
s ce10.chrX              5427628 3 + 17718866 TTC
s cb4.chrX              10778509 3 + 21540570 TTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2190550 3 -  4500979 ttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     43362 3 -  1189296 TTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713786 3 +  4147112 ttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   563665 3 +   823664 TTC
i caeJap4.Scaffold18194 I 43 C 0
e caeAng1.scafRNAPATH9     10193 0 +    24476 C

a score=581377.000000
s ce10.chrX              5427631 665 + 17718866  
s cb4.chrX              10778512 669 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2190553 660 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     43365 653 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3713789 672 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   563668 669 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     10193 749 +    24476  
i caeAng1.scafRNAPATH9  C 0 I 57

a score=19579.000000
s ce10.chrX              5428296 61 + 17718866 TGAAAGTGAAT------TTCCTTTATCTAATG---------G------GGACTTT---GAAAAAGTGTCAATGAACTTTTCTGTA
s cb4.chrX              10779181 64 + 21540570 TGGAAATGAACAAT---CTCCGACTTTCTCcg---------a------taatttt---gaagaagtttCAATTAATGTGGCTGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2191213 70 -  4500979 agaaagtgaatATT---CTGCATCATCTCATG---------AAACAACTGACTTT---GAAGAAGTTCCAATAAATGTTGCagta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44018 70 -  1189296 TGAATGCGAAT------CTCCGGCATTGTCCGATGGGGTGAA------TGATTTT---GAGGAAATTTCGATAAATGTAGCAGTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714461 64 +  4147112 AGCAATCGAATCTA---CTCCGTCACAAtctg---------a------tgatttt---gaagagattTCCATAAATGTGGCTGtt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   564337 76 +   823664 CGAAAGTGAAATTTCACCCGCACTATCCTCTG---------CCGCGACAGACTTTGAAGAAGAAGTTTCCATCAATGTTGCCGtt
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     10942 57 +    24476 I

a score=182226.000000
s ce10.chrX              5428357 235 + 17718866 GAAGATGAGGAAGAAGTTTTGGAACTCATTAAAGAAAAGGTGTCCAGTATTTTGATGTGTTCTCCAACCAAGTTGAAGAACAACAAGAACATAATGGATATGGGATTAGATTCCAAACTTATTGTCGAATTTCTCAACTTTATTAATTCAACTTTCAAGATATCCGTGAACCTCTCTGATGCATACAATCACCCAACTCTCGAAAAGTTAGCCGCCCATATATTTGAGCAAATGA
s cb4.chrX              10779245 235 + 21540570 GAAGATGCAGATGAGgttctggaacttttgaaagagaaagtttctgaaattgtgaaatgtGCTCCAAGTAAACTGAAAAGCAATAAGAATATCATGGATTTGGGGATGGACTCGAGACTGCTGgtggagtttttgaattatattaacttgactttcaaaatcaaattgaacTTGGCCGATGCCTACAATTACTCAACATTGGAGAAGTTGGCAGCTTGCATTTTCGACAAACTGA
i cb4.chrX              C 0 I 61
s caeRem4.Crem_Contig0   2191283 235 -  4500979 gaagatgaagaagaagttttGGAACTCATCAAAGAGAAAGTGTCATCTATCTTGAAATATGCTCCAAGCAAACTGAAAAGCAACAAGAACATCATGGATATTGGATTAGACTCCAGACTTCTcgtcgaatttttgaactttatcAACGCTACATTCAAGACTAAACTGAATCTGTCCGATGCTTACAACTATTCGACACTTGAAAAACTGGCAtctcatatttttgagaaactga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44088 235 -  1189296 GAAGATGAGGATGAAGTGCTGGATCTTCTCAAAGAAAGAATATGTTCCATGCTGAAATGTGCTCCAAGCAAGTTGAAGagcaataaaaatataatggATATCGGACTAGACTCCAGACTGcttgttgaatttttgaatttcatcaattctacattcaaaacaaaattgaacTTGTCTGATGCCTATAATTACTCGACACTCGAAAAGTTAGCAGGttgtatttttgagaagatga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714525 235 +  4147112 gaagatgaggaggaagtCTTGGAGTTACTCAAAGAAAAGGTGTCATCAATTCTCAAATGTGCCCCaagtaaactgaaaaataacaagaatATTATGGATATTGGATTGGATTCCAGGCTTTTAAtggaattcttgaattttatAAATGCAACGTTCAAAACCGAGTTGAACCTTTCGGATGTCTACAATTACTCGACACTTGAAAAGCTGGCAAAtcatgtatttgaaaaaatca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   564413 233 +   823664 gaagacgaagaagaaatTCTGGAGTTGCTTAAAGAGAAAATTTCGTTACTCATAAAATGCCCTCCAGGTCGACTCAAGAACAACAAGAGCTTTATGAGCATTGGGTTAGATTCAAGACTTCTCACTGAATTGTTGAACTTTGTCAATACTACTTTCAAAACCAAGTTGAATCTCTCAGACGCCTACAATCATTCAACCTTGGAAAAATTAGCCGGCCACA--TTTGGGAAAATGT
i caeJap4.Scaffold18194 C 0 I 5
s caeAng1.scafRNAPATH9     10999 233 +    24476 gaagatgaagatgatcttttagattttctgaaatcggaaattgcaaaactcaCCAACACTCCCGTCAAAAAGTATAAAAACAACTCAAATATCATGGAATCTGGTCTTACTTCAAATTTGTTGATGACCCTTATGAGCACCCTGAATTCAtcgttgaatttgaatttgaatattggtGATTATTATAATAATCCAGTTCTAGAAAACTTGACCGAATTCATCTgggaaaacat--
i caeAng1.scafRNAPATH9  I 57 C 0

a score=-1300.000000
s ce10.chrX              5428592 1 + 17718866 -C
s caeRem4.Crem_Contig0   2191518 1 -  4500979 -C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44323 1 -  1189296 -c
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714760 1 +  4147112 -c
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold18194   564651 1 +   823664 -C
i caeJap4.Scaffold18194 I 5 C 0
s caeAng1.scafRNAPATH9     11232 1 +    24476 g-
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10779480 61 + 21540570 I

a score=-7515.000000
s ce10.chrX              5428593 14 + 17718866 AATTGTCG----ACCATC----
s caeRem4.Crem_Contig0   2191519 11 -  4500979 ---TGCAG----TTGATG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44324 17 -  1189296 -agagcagaaaaatgaga----
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   564652 15 +   823664 ---TATTGACAAACCATC----
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     11233 14 +    24476 --------aaaaatcaagcttc
i caeAng1.scafRNAPATH9  C 0 I 20
e caePb3.Scfld02_0       3714761 38 +  4147112 I
e cb4.chrX              10779480 61 + 21540570 I

a score=-4565.000000
s ce10.chrX              5428607 16 + 17718866 CTGT-----GAACAGTGTCAA
s caeRem4.Crem_Contig0   2191530 15 -  4500979 TTGC------CGTtacttctg
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626     44341 21 -  1189296 atgcaCAAGAAGAAATGTCTG
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   564667 15 +   823664 GGGTATACAAGAAAA------
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     11247 20 +    24476 I
e caePb3.Scfld02_0       3714761 38 +  4147112 I
e cb4.chrX              10779480 61 + 21540570 I

a score=1064.000000
s ce10.chrX              5428623 4 + 17718866 AAGT
s caeRem4.Crem_Contig0   2191552 4 -  4500979 aaac
i caeRem4.Crem_Contig0  I 7 I 14
s caeSp111.Scaffold626     44362 4 -  1189296 GAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714799 4 +  4147112 aagc
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold18194   564682 4 +   823664 Ggat
i caeJap4.Scaffold18194 C 0 I 3
s caeAng1.scafRNAPATH9     11267 4 +    24476 aaac
i caeAng1.scafRNAPATH9  I 20 C 0
e cb4.chrX              10779480 61 + 21540570 I

a score=38453.000000
s ce10.chrX              5428627  90 + 17718866 GAAGAAATTTTC------------------------------------AAATCGACAGATTTTTGCCCAATTTTCGGAATTAACATTTTCTTTGATAACAAGAATGACTTTGACAAAGCGAAATCA
s cb4.chrX              10779541  91 + 21540570 TAAAAGAGAGACG-----------------------------------AAATCTACAGATTTCTGTCCATACTTCGGTGTAAATGTTTTCtttgataaaaaagaaaacttggaaaaagcaaaaTCT
i cb4.chrX              I 61 C 0
s caeRem4.Crem_Contig0   2191570  82 -  4500979 caaa--------------------------------------------aaatctacagatttctgttcattttttggtgtGAATCTTTTCTTCAACGACAAAGATAGCATTGAGAGATCAAAATCA
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold626     44366  84 -  1189296 TAAGAAT-----------------------------------------TCATCCAATGACTTCTGTCCATACTTTGGAGTCAAtgtattctttgaaaacaaagaaacattagaaaaag-taaaaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714803  85 +  4147112 taaaaat-----------------------------------------aaatCCAATGATTTCTGCCCGTTCTTTGGAGTGAATATCTTTTTCGATGATAAGGAAACCTTAGAAAATGCCAAAAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   564689 126 +   823664 caagaaaaagacGTAGATAAGCAAGAAAAACAAGTAGTGGacatcaaaaaatcaaacgATTTCTGCCCAGTTTTCGGTGTCAATGtgtttttcgacaaaaaagagcatctagaaaaagcaaaatca
i caeJap4.Scaffold18194 I 3 C 0
s caeAng1.scafRNAPATH9     11271  83 +    24476 gaagaaaattga------------------------------------aaatc--ccgatttttcatcgatgTTTGGTGTAAATGTGTTTCTGGAGGAGAAGAAAGAGTTGAATGATATCA-----
i caeAng1.scafRNAPATH9  C 0 I 47

a score=12049.000000
s ce10.chrX              5428717 36 + 17718866 ACTGCTGTAAAACTACTTGAAAATGGAGAACAATTG
s cb4.chrX              10779632 36 + 21540570 GAAGCTGTTAAATGTTTGGTGTCCGGAAAAACATTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2191652 36 -  4500979 GAAGCTGTCAGATGTTTGGAATCTGGGAAACCGCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44450 36 -  1189296 gaagCTGCTACTTTGCTTCAAAATGGAGAATCATTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3714888 36 +  4147112 GAAGCCGTAAAATGTTTGGAAACTGGGAAAACTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   564815 36 +   823664 aaaGCGCTTTCACTTTTGGAAACAGGAAGAGCTTTA
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     11354 47 +    24476 I

a score=853636.000000
s ce10.chrX              5428753 916 + 17718866  
s cb4.chrX              10779668 933 + 21540570  
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0   2191688 923 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     44486 922 -  1189296  
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3714924 920 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   564851 944 +   823664  
i caeJap4.Scaffold18194 C 0 I 6
s caeAng1.scafRNAPATH9     11401 905 +    24476  
i caeAng1.scafRNAPATH9  I 47 C 0

a score=-13130.000000
s ce10.chrX              5429669 26 + 17718866 --------TATTTGTAACATATGTACAGGCGTT-A
s caeRem4.Crem_Contig0   2192611 26 -  4500979 --------GCATTGCCCTATCCAAATAGAGATTA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     45410 21 -  1189296 --------tgaatatccCTTATTACT----ATT--
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3715846 21 +  4147112 --------GAAGTGTTGCATACGTAC----GTT--
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   565801 21 +   823664 --------GACATGCCGCAAGGGCAA----TCT--
i caeJap4.Scaffold18194 I 6 C 0
s caeAng1.scafRNAPATH9     12306 26 +    24476 gatctgAAACAATAACACATATTTTC---------
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10780601 23 + 21540570 I

a score=1945017.000000
s ce10.chrX              5429695 2544 + 17718866  
s cb4.chrX              10780624 2526 + 21540570  
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   2192637 2555 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     45431 2553 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3715867 2553 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   565822 2562 +   823664  
i caeJap4.Scaffold18194 C 0 I 19
s caeAng1.scafRNAPATH9     12332 2509 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-3383.000000
s ce10.chrX              5432239 19 + 17718866 CAAGTCTTTCCAAAGAGTT------
s cb4.chrX              10783150 19 + 21540570 AACTCATTTTCAAAGAGTT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2195192 19 -  4500979 AACCAGTTTTCGTAAAGTC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     47984 19 -  1189296 tgaagactACAAAAGAATT------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3718420 19 +  4147112 CCGGCTGTACCAGAAAGTA------
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9     14841 15 +    24476 ----------catggatttttgatt
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   568384 19 +   823664 I

a score=716914.000000
s ce10.chrX              5432258 1476 + 17718866  
s cb4.chrX              10783169 1461 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2195211 1470 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     48003 1473 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3718439 1464 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   568403 1473 +   823664  
i caeJap4.Scaffold18194 I 19 I 42
s caeAng1.scafRNAPATH9     14856 1408 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-4949.000000
s ce10.chrX              5433734  8 + 17718866 CAT-----TCCGA
s cb4.chrX              10784630  8 + 21540570 TCT-----ACTGA
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   2196681 13 -  4500979 actggagaattga
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     49476  8 -  1189296 TCG-----CCAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3719903  8 +  4147112 CCA-----ACAGA
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9     16264  8 +    24476 -----TAATCACA
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   569876 42 +   823664 I

a score=-12004.000000
s ce10.chrX              5433742 39 + 17718866 -AAGTT---TATCACATGATAG---------AGTTTCTTCTCAAGTGTCAAA
s caeRem4.Crem_Contig0   2196695 34 -  4500979 ---------aaactcagaaaac---------gaAATCGGCTCAGAACACAAA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     49484 19 -  1189296 ---------CAATATACAAAAA---------GCATT---------------A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3719911 39 +  4147112 -ATATCCGTCAGCGGAAAAAGA---------ACCTTCTcttgagaa---aaa
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9     16272 44 +    24476 GAAATCA--AAACTCCAGAGAATTCTGAATCAATTTCTAGTCATGA------
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   569876 42 +   823664 I
e cb4.chrX              10784638 39 + 21540570 I

a score=-1409.000000
s ce10.chrX              5433781 4 + 17718866 TAAA
s cb4.chrX              10784677 4 + 21540570 taga
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2196729 3 -  4500979 -ATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     49503 1 -  1189296 ---T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3719950 1 +  4147112 ---t
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9     16316 4 +    24476 TAAA
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   569876 42 +   823664 I

a score=1023595.000000
s ce10.chrX              5433785 1401 + 17718866  
s cb4.chrX              10784681 1380 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2196732 1395 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     49504 1400 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3719951 1398 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   569918 1383 +   823664  
i caeJap4.Scaffold18194 I 42 C 0
s caeAng1.scafRNAPATH9     16320 1361 +    24476  
i caeAng1.scafRNAPATH9  C 0 I 27

a score=-3667.000000
s ce10.chrX              5435186 50 + 17718866 AATGAGCTATTAAAA---ATAAGAACCAATAAGAAAACTTGGTTCAATGGGAA
s cb4.chrX              10786061 53 + 21540570 atcattggaaaagttcaaatcaaaagtttctctaaaatcaaaacatctatgaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2198127 50 -  4500979 AACAACCAAACCATT---ATCAATAGAGGTCCAAGAATCAAATGGCAACCTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     50904 47 -  1189296 aac---caaatacat---atcacaaaaagcccaacaatcaaatcaataacaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3721349 50 +  4147112 AACAATCAAAATTAT---ATTACAACTGGCCCGAGAGTCAGATTCGCCATGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   571301 50 +   823664 AACGGTAGGATTAAA---ATTACCAGAGGAATTTCAACTAAATTGCCCACaaa
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     17681 27 +    24476 I

a score=62917.000000
s ce10.chrX              5435236 160 + 17718866 A------TCTCCCAAAATTGCATTGTTCTTTGCACCGCAAGGAATTCAATTCACAAATATATTACCGAATGAA---TATTTGAA---GAACTCAGCATATAGACGTGAAGTTGAATACCTTTGCGAATTGGCAAGTTCCTTCGGAATACCGTCACTGGAGGGAATATTGTAT
s cb4.chrX              10786114 160 + 21540570 a------tctccaaaaattgcATTATTTTTCGCTCCACAAGGAATTCAATTTGCCAACATCTTGCCGCATGAG---TATGTaca---taattttgatttcaaatcttCATTGGAGAGACATTGCAAAACTGCAGAACATCTTGGAGTGTCCAACcttctagaaattttataC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2198177 160 -  4500979 A------TCTCCAAAAGTTGCTCTGTATTTTGCTCCTCAAGGTgttcaattttcgaatatctTACCTGAAGAA---TATCATAA---TAATGTAATCTATCAAAAAGCAATTCAACGACTTTGCAACTCTGCAAATAATCTTGGATTGAGGAACTTGGAAAGAATTCTGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     50951 163 -  1189296 a------caaccaaaacTAGCATTATTATTTGCCCCTCaaggaattcaattttcaaatgttctaATTGATGAA---TACAAAGATACCAATTCTTTGTTCAGAAAGAATCTCAATAAACTTTGTGAATCTGccaagaaaattggaatgagTAACCTGAAGGACGTTTTGTAT
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       3721399 163 +  4147112 A------AATCCAAAAGTGGCTCTGTTTTTTGCTCCACAAGGAGTTCAGTTTGCAAACATTCTACCAGAAGAGTTTTGCCAAGA---AGACTCCATCTTCAGGAAAACTGTGGAAGAATTATGCTTCACtgctggaaaaatgggaatgcAAAACATTAAGAAAATATTGTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   571351 166 +   823664 gaaaaattctccgaaaatAGGTTTATTCTTTGCCCCTCAGGGATTACAATTTTCACAAACACTAATTGATGAG---TACCATCG---CAAAGGCAATTATCGAAAAGAGATAGAACACCTGTGCGCAACAGCTGAGAGACTGGGTATGCCAAATTTGGAGGACGTGTTGTAT
i caeJap4.Scaffold18194 C 0 I 3
s caeAng1.scafRNAPATH9     17708 160 +    24476 A------TCTCCGAAAAcctgtatattttttgcaccCCAAGGCATACAGTACTCAAATCTTCTTCAAACTGAG---TATGGAAA---TAACCCTGATTTCAAGAATGAAGTTCTCAAATTATGCAAAATtgcatcaaaaattaccGGAAGAAACTTCGAGAAAATATTGTAT
i caeAng1.scafRNAPATH9  I 27 C 0

a score=-11187.000000
s ce10.chrX              5435396 19 + 17718866 CCCACCAA------AAATTTTGACC------
s cb4.chrX              10786274 22 + 21540570 CCTGGGAATTATGAAAA---TGAGG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2198337 19 -  4500979 CCTACTAA-TATGGAA-----GACG------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3721562 19 +  4147112 CCCCCGAA---TCAAAA---TCAGC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   571520 22 +   823664 CCTTTGCATAAACAAGA---TGACA------
i caeJap4.Scaffold18194 I 3 C 0
s caeAng1.scafRNAPATH9     17868 19 +    24476 ---------GCAGAAGA---TAATCAAGAAG
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     51114 10 -  1189296 I

a score=396608.000000
s ce10.chrX              5435415 887 + 17718866  
s cb4.chrX              10786296 881 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2198356 899 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     51124 887 -  1189296  
i caeSp111.Scaffold626  I 10 I 20
s caePb3.Scfld02_0       3721581 896 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   571542 887 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     17887 903 +    24476  
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-3493.000000
s ce10.chrX              5436302 13 + 17718866 --------CCGGTGAGCAGTG
s cb4.chrX              10787177 13 + 21540570 --------AAATTGAATAATT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2199255 13 -  4500979 --------AAAGAAGACAGTT
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3722482 13 +  4147112 --------tgacaagcCAGCC
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   572429 12 +   823664 --------ACAGTAGACGTT-
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     18790 21 +    24476 CAGAACACAAAGTAGATgctg
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     52011 20 -  1189296 I

a score=-45441.000000
s ce10.chrX              5436315 159 + 17718866 AGCTTGAAGAGACTAAACCAGTTCGTTTTACAGTCTGCGA-TGGATCATTAAATGGCATATCTGAACCC----------------GTTCTTGTGTATCTGCTCAGAAAATCCGAAGATATTCACAAAAATTACTTCGA--TGTAGAATTATTTTTGAAATCATCGCC----GAGATGTTCTA
s cb4.chrX              10787193 159 + 21540570 TGTCTACTACAGCTGctctttctgattttcaaatatatga----------CAAGAATATTGGATCAACTCAA----ACCTCGAAAATCCTCGTCTATCATCTTGAAGGTTGTTCGGATTctcatcaaaattattttga--agtggagaaatttctaaaacagT---G----TCAATATGAAA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2199275 152 -  4500979 CATTCACT-------CACTTGTCTCTTTTGAGATTTATGA----------CAGAAGTGTGACAGCCACC-------ACGTCTtctattttggtttttctgcTCGAAGAATCTGAAGGTCTTCATACGAACTATTTTGA--CGTTGAAAAGCTTTTGAAGTCTTCTCT----TCGGTATGAAA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626     52031 138 -  1189296 -AGCTGCTGAAAA----CCAAATCAACAC-------GGAT----------AATTACTCTGACACCACTT--------------------CAGTTCACAAATTATACGAAACATCTGACCttcatgaaaattatttcaa--agtGGAGAGAATCCTACAGGCATCCTCCGCTTGCAAAGGATA
i caeSp111.Scaffold626  I 20 C 0
s caePb3.Scfld02_0       3722495 145 +  4147112 AATTTGCTAAATC--TTCCAGTTCACTCTCTGGTTGGAAA----------GAATGGAATAAGACCACCT-------------------GTTGTCCATAAACTATACGAGTCCAGTGATCTTCACAGAAATTACTTTGA--GGtggaaaagattttgaaagcGTCAAC----TTCCGAGGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   572441 172 +   823664 --TTGGATAGCAG--TTCTAATCCGTATCTCGATTTTTGCATATATGATCCAAAAATATCCCAAAATTCGAAGAAGTCAGTTTCCAACCTTGTTGTTCCTTTGTATCAAGCAGAAGATATACATGAGAACTTTTTCGA--GATCAAAAAGTTACttaaaacgcaatt----caagatCGATT
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     18811 145 +    24476 attctgaaaatgc------agATTATCAACTAGTTCAAGT----------AGGTGATAAAATGAAATCT-------GATGGGATTTATGTGTTTGATTTAATTGACAATTGTGATGATTTGAAC--AAACCATTTCAGTTGGTTGAACATTTGCTGAAAGAGAGTTT----CAA--------
i caeAng1.scafRNAPATH9  C 0 I 37

a score=4661.000000
s ce10.chrX              5436474 35 + 17718866 CTGTAGTTTTTGTCGGAATGGATAATTCCCCAAGC
s cb4.chrX              10787352 35 + 21540570 CATGTCTGTTTATCACATCCTCTGATTCTGCAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2199427 35 -  4500979 CGATCCTTTTTATTGCTAACAGTGATCAGCCTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     52169 31 -  1189296 T----GTCTTCATTGCTATGTGTGACTCTCCAAGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3722640 35 +  4147112 CCTTAATCTTCATTGCCATGTCTGATTCCCCGAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   572613 35 +   823664 CTCTGATATTTGTGGCAATGGACAACTCGTCAAGT
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     18956 37 +    24476 I

a score=26390.000000
s ce10.chrX              5436509 38 + 17718866 GTACATTTATCTCTGGGCCTGATTCGGTGTTATCAACT
s cb4.chrX              10787387 38 + 21540570 GTTCACATTATTTTGGGACTGCTACGATGCCATCAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2199462 38 -  4500979 AATCAAATGATTCTCGGACTTCTTCGTTGTTATCAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     52200 38 -  1189296 GTCCATCTTGTTTTGGGATTGATTCGATGTTACCAACT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3722675 38 +  4147112 GTTCACTTGGTTTTGGGACTGATCCGTTGTCACCAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   572648 38 +   823664 GTTCATTTAGTATTAGGTTTGCTGAGGTGTTACCGATT
i caeJap4.Scaffold18194 C 0 I 16
s caeAng1.scafRNAPATH9     18993 38 +    24476 ACAAATATGGTTTTGGGGTTGATAAGATGTTATGAAAC
i caeAng1.scafRNAPATH9  I 37 C 0

a score=-1578.000000
s ce10.chrX              5436547 16 + 17718866 TGTTTCAAGAATCGAT---
s cb4.chrX              10787425 16 + 21540570 TGTTTCAAGAACCAAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2199500 16 -  4500979 GATTTCCAGAACAAGA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     52238 16 -  1189296 GGTATCCAATAAGCCG---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3722713 16 +  4147112 AATATCAAGAGCAGTC---
i caePb3.Scfld02_0      C 0 C 0
s caeAng1.scafRNAPATH9     19031 19 +    24476 cgtttcaaatcaaaacgTT
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   572686 16 +   823664 I

a score=18943.000000
s ce10.chrX              5436563 44 + 17718866 TTGAAATATGTGGAAAATTTCGAAAACATTGCCATGTCCATTGT---
s cb4.chrX              10787441 44 + 21540570 ATCAAGTTTGTGGAGAACTTTGAGAATCTGGagctcaaaaaagt---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2199516 44 -  4500979 ATCAAGTACATCGAGAACCTGGATCACCTTGAAGTATCAAATAT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     52254 44 -  1189296 ATCAAATacattgaaaactttgaacaTCTCAAAATATCAGAAGT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3722729 44 +  4147112 ATCAAGtatgttgaaaatttcgaacGATTGGAGGAATCAAAAGT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   572702 44 +   823664 TTGAAGTACGTAGAAAATTTTGAGCGTCTACCAATATCCGAAGT---
i caeJap4.Scaffold18194 I 16 C 0
s caeAng1.scafRNAPATH9     19050 44 +    24476 ---GTGTGTGTTGAGAATCCAGAGAGCCTTGAAGCAAAGAACATTGT
i caeAng1.scafRNAPATH9  C 0 I 122

a score=-19604.000000
s ce10.chrX              5436607 119 + 17718866 GATACAGAAGGTGTTAACAGCAA-ACGGTTTGTATTTCCGTATTGATTCAACTGGTCTCTGTAAGCACGGGTTTCGCACAACTGAAATTCCTTCCAGGTTACATCCAGTTTCTCG---------------TGGGC
s cb4.chrX              10787485 122 + 21540570 tgtcagcaaTGCAATTGCCTCGG-ATGGCTTGTATGTTCGTGTCACTTCGGAAGGGGTGTTCGAACATGGCTTT------TTGCAAATCTCTCCGAACACGCATTCGA------TAAAAACGAAGATGAGAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2199560 119 -  4500979 TGTTGCAAAAACAGTGAACTGTG-AAGGATTGTATCTTCGCTTGGCTTCAAGTGAAGTTTTCTGCCATCACTTC------AAGGAGATGCTTCCAAGATCACCTCCA--------AATAGTCCTGTTGA-AGGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     52298 125 -  1189296 C-CTGGAGTCGATGTCGAAATTAGATGGATTATATTTTCGTGCAACTTTCGCCGGTGTTTTCGAGCATGAATTC------GATGAGATA-GACTCAAAACT--TCCGAATACTTTGAAggttgaaatgaaaaaac
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3722773 125 +  4147112 AGTTCGTTTGGCTCTCGAAGTCA-ACGGGTTATATGTTCGTATCACATCCACCGCAGTTTTTGAACAcgaattc------tctgaaat---tccaaGAACTCATCCACCTGGTTCAAGGATCTTCACTTCAAGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   572746 119 +   823664 AGTTTCAAGATCAGTGCAACAGG-ATGGATTATATTTACGAGTGACAACTTCTCAAACTTACGAATATGCATTC------CAGTGCATTCCTCAAATGTATGTTTCGCTTTCT--GAACGCTA-------TGGTA
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     19094 122 +    24476 I

a score=316908.000000
s ce10.chrX              5436726 921 + 17718866  
s cb4.chrX              10787607 894 + 21540570  
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   2199679 913 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626     52423 915 -  1189296  
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3722898 927 +  4147112  
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18194   572865 925 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     19216 882 +    24476  
i caeAng1.scafRNAPATH9  I 122 C 0

a score=-8191.000000
s ce10.chrX              5437647  9 + 17718866 TTACC-----ACGG
s cb4.chrX              10788520  9 + 21540570 TTCCT-----GTCA
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   2200611 14 -  4500979 AAACTCAAAGATGG
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold626     53341  6 -  1189296 ATACT-----G---
i caeSp111.Scaffold626  I 3 I 42
s caeJap4.Scaffold18194   573790  3 +   823664 -----------CGA
i caeJap4.Scaffold18194 C 0 I 6
s caeAng1.scafRNAPATH9     20098  8 +    24476 AAATT-----GTG-
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3723825 31 +  4147112 I

a score=-5334.000000
s ce10.chrX              5437656 22 + 17718866 --AGAAATTTGCGGGAAACACTAA
s cb4.chrX              10788529 16 + 21540570 --TCaagatgacgaaaaa------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2200625 20 -  4500979 --ACCAATTGACAAAGAGGACC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   573799 15 +   823664 --agaaaatgaaattag-------
i caeJap4.Scaffold18194 I 6 C 0
s caeAng1.scafRNAPATH9     20106 17 +    24476 CCTGTCAATAACAATCA-------
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3723825 31 +  4147112 I
e caeSp111.Scaffold626     53347 42 -  1189296 I

a score=-5602.000000
s ce10.chrX              5437678  8 + 17718866 ---------TGATAAGA
s cb4.chrX              10788545  4 + 21540570 -------------attc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2200645  6 -  4500979 -----------ATATCC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3723856  5 +  4147112 ------------TGTCA
i caePb3.Scfld02_0      I 31 I 3
s caeJap4.Scaffold18194   573814  5 +   823664 ------------AGTCA
i caeJap4.Scaffold18194 C 0 I 2
s caeAng1.scafRNAPATH9     20123 17 +    24476 AGATGAATTTATTATCA
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     53347 42 -  1189296 I

a score=807285.000000
s ce10.chrX              5437686 1221 + 17718866  
s cb4.chrX              10788549 1236 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2200651 1227 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     53389 1221 -  1189296  
i caeSp111.Scaffold626  I 42 C 0
s caePb3.Scfld02_0       3723864 1233 +  4147112  
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   573821 1222 +   823664  
i caeJap4.Scaffold18194 I 2 C 0
s caeAng1.scafRNAPATH9     20140 1266 +    24476  
i caeAng1.scafRNAPATH9  C 0 I 42

a score=45850.000000
s ce10.chrX              5438907 85 + 17718866 CCACTATACCAATTCGA---AGAACTGATTTCCCTTCCACTCTTTTCCAAAAAGGCCTTTTTACCTCTTGGAGGTTATTTACGGA------ACC
s cb4.chrX              10789785 94 + 21540570 aaattataCACGTTCGTCGGCGAGCCGACTTCCCCTCATTTCTTTTCCAAATTGACTTGTTGACCTCTTGGAAGCTATTTTCGGACGAGTCGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2201878 88 -  4500979 aaatcatACCCGTTCGT---CGAGCCGACTACCCTTCTCATCTTTTCCAATGTGACTTGTTGACCTCTTGGAAGCTATTTTCGGAGGA---ACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     54610 85 -  1189296 aattaatACCCGTTCGA---CGGGCAGACTACCCCTCGtccctttttcaaattgactTGTTGACCTCTTGGAAGCTATTTTCGGA------GCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3725097 85 +  4147112 AAATTATACCCATTTGT---CGAGCCGACTACCCTTCCTCGCTATTCCAAATTGACTTGTTGACCTCTTGGAAGCTATTTACGGA------AAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   575043 88 +   823664 ATCGGAGACAGGTTAtcaaaaaaaccgattttcctCTGTCGTGCATTCAAAACGATCTGTTGAAATTGTGGAAACAATCTACTGA------ACT
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     21406 42 +    24476 I

a score=917024.000000
s ce10.chrX              5438992 1347 + 17718866  
s cb4.chrX              10789879 1353 + 21540570  
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   2201966 1350 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626     54695 1350 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3725182 1350 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   575131 1350 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     21448 1290 +    24476  
i caeAng1.scafRNAPATH9  I 42 C 0

a score=-19410.000000
s ce10.chrX              5440339 37 + 17718866 TTTGATTTCTT---ACAGCAGA-----TCGTTTTTATGGTT----CTAT--
s caeRem4.Crem_Contig0   2203322 27 -  4500979 cttga-ttttt---tcaat--------------ttcagaat----tttt--
i caeRem4.Crem_Contig0  I 6 I 2
s caeSp111.Scaffold626     56045 26 -  1189296 --------tttctaaaaatgga-----------TTCAGAGT----CTAT--
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3726532 15 +  4147112 --------GAT---AAAAC-------------------AGT----ttat--
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   576481 15 +   823664 ------------------------------TTGtcttaaat----tttt--
i caeJap4.Scaffold18194 C 0 I 22
s caeAng1.scafRNAPATH9     22738 48 +    24476 TTatatttgtt---ttaaaaaatctcgtcacatctaaaaatacaattttaa
i caeAng1.scafRNAPATH9  C 0 C 0
e cb4.chrX              10791232 29 + 21540570 I

a score=321308.000000
s ce10.chrX              5440376 477 + 17718866 A----------ATTTTCAGGTTATCAATGTCTTCTCGAAAATCCTTGGAAGAAATGTGGCGCCGACAGATAAATTTGAAAGTATTGGTGGAAACTCCCTCAATGCTATTCAAATTGCTCATCGGTTGGCTGAAGAGCTCAAGATTGAAATAAAGGCTCATGAAATCCTGCAGTCAAATAGTTTGAAAACTTTTTGCAACACTTTGAAAAATTCAGTACAAAAGCCAATTTCAAAAGTTCCAAACGTGATAACTAAATTGAGAGAGGTGAG-CATTTTTCGAACTTTGCTAT--TTGCATGTAATAATTTC---------------AGGTTCCAAATTCCAAATTTAATATTTACTTGGTACATGCAATTGGTGGAACAATCTACCCGTATTATTCATTCCTTCAAATATTCCCGAAAGACATATCCTTATATGGAATTGAATTTGATCTGAAATACCCGTCGAATGACCTGCGTGAATTGGCTCATTTTTATGCTGAAGAGGTGA
s cb4.chrX              10791261 476 + 21540570 g----------aGTTTCAGATTGTCAAAGCAAGTGGTGACGTCTTGGGTCGCAAAACAGAAATCACCGACAAATTTTCTGATGTCGGAGGAAATTCATTGACTGCTATCCAACTTGCTCATCGGTTGACTGAAGAGTTGAAATTCGATGTGAAAGCTCACGAAATACTACAGTCCAAcaattttggagatttgagCAAAACTTTGGCGAGTTCTGTAACCAAGCCAGAATCAAAGGTTCCAAATGTTATAACCAAATTGAGAGAGGTA---------------TACTTTTA--TGCCTAATTTTTAATTC-ATCtttttttAATCAGGTGCCCAACTCGAAATTCAGCATCTATTTGGTTCATGCAATTGGAGGAACTATCTATCCATACTACTCGTTCCTGCAAATCTTCCCCAAAAACATTTCCCTTTATGGAATCGAGTTTGATTTAAAATATCCGTGTGGTGATTTGAGAGAGCTCGCTCATTTCTATGCACAGGAGGTT-
i cb4.chrX              I 29 I 36
s caeRem4.Crem_Contig0   2203351 474 -  4500979 t----------atttctagGTATCAAAAGTATCAAGTGAAGTTCTTGGTCGTCAGACATCGTTGACTGACAAGTTCACAGAAGTTGGTGGTAACTCTTTGACCTCAATTCAACTTGCGCATCGGCTCACCGAtgagttgaaatttgaagtcAAGGCTCATGATATCCTTCAATCAAACAACTTCAAGGATTTGAGCAATCAATTGGCTAAATCTGTTGAAAAGccatcttcaaaaattccaaatgttATCACCAAACTGAGAGAGGT----------------TGAGTGAA--TACTAAATGAAAACTGT-AACTTTAAGAATTCAGGttccaaactcaaaattcaacaTCTATCTGGTACATGCTATAGGCGGAACCATCTACCCGTATTACTCATTCCTGCAAATCTTCCCGAAAAACATTTCCCTTTATGGAATCGAGTTCGATTTGAAATACCCATCAAACGACTTGAGAGAACTTGCTCATTTCTATGCTCAAGAGGT--
i caeRem4.Crem_Contig0  I 2 I 3
s caeSp111.Scaffold626     56076 472 -  1189296 -----------AATTTCAGGTCACAGAAGCTGCTTCACAGATTCTCGGTCGTCCAGTGAAAATAACGGAGAAATTCACAGATGTCGGCGGCAACTCCTTGTCATCCATACAATTTGCTCATCGTTTGACAGAAGAACTGAAATTCGAAGTGAAGGCTCATGAAATCTTGCAATCTGAAAGTTTGAGACAATTGAGTGACAGCTTGTCGAAATCTGTTTTGAGACCATCTTCAACTGTTCCCAACGTGATCACCAAACTAAGAGAAGTAGT-CA------AACCtttttttACCgtataaaaaacattttc--------------cagGTAcccaattcaaaaataagcaTTTACTTGGTTCACGCTATTGGTGGAACCATCTACCCATATTATTCATTCTTGCAAATCTTCCCAAAGAATATTTCGGTATATGGAATTGAGTTTGATTTGAAGTATCCATCTGgtgatttgaaagaattggCCCGTTTCTATGCACAAGAGGTG-
i caeSp111.Scaffold626  I 5 I 25
s caePb3.Scfld02_0       3726555 488 +  4147112 gaaaattactaaTTTTCAGGTTACTAAGGCGACTGCCGAAATTCTTGGTCGTCCAACCAAAATGACTGAAAAGTTCACAGAAGTTGGTGGGAACTCTTTGACATCGATTCAACTGGCTCATCGTCTGactgaagaattgaaatttgaagtcaAGGCTCATGAAATTCTTCAGTCTTCAAACCTAAGAGATTTGAGCGCGACATTATCTAAATCAGTCACAAAACCAACGTCAACAGTTCCGAACGTGATTACAAAACTGCGAGAAGTGAG-------------TTGTTTTA--GTCTGAAAGATTATTTCAATGCTTCTCTGTTTAGGTTCCAAACTCCAAAGTCAGCATCTATTTGGTTCATGCAATTGGTGGAACAATTTATCCATATTATTCGTTCTTGCAAGTATTCCCCAAAAATGTGTCGTTATATGGAATTGAGTTTGACTTGAAATATCCATCCAGAGATTTGCGAGAGTTAGCTCATTTCTATGCTCAAGAAGT--
i caePb3.Scfld02_0      I 8 I 5
s caeJap4.Scaffold18194   576518 473 +   823664 ----------taatttcagatcaataagGCTGTATCTGATATAGTGGGTCAAAAAACAAGCCTCACTGACAAATTCACTAACGTTGGCGGTAATTCCTTGTCTGCGATCCAACTGGCTCACCGACTTACTGAGGAACTAAAATTCGAAGTCAAAGCTCATGACATTTTgcagtctgaaaatttgaaagacCTCAGCACAAGTTTggcaaaaaaagttgaaagacCTTCTTCCACCGTATCAAATGTGATCACCAAACTGAGAAAGGTAATGCATTTATAAAGTTGTGAACA--TTGTAAG----ATTTTC--------------TAGGCTCCTGACGCCAAGTTCAACGTTTACCTTGTGCACGCAATTGGTGGGACCATTTATCCGTATTACTCATTTTTGCAAATCTTCCCTAAAAACATTTCGGTGTATGGAATTGAATTTGACTTGAAATATCCATCTGGCGATCTGAGGGAACTTGCACACTTTTATGCTAAAGAGGT--
i caeJap4.Scaffold18194 I 22 I 2
s caeAng1.scafRNAPATH9     22786 426 +    24476 ---------aagtttccAGGTTCTCAACACAATATCAACAGAAATCGGCCACACTGTTAATCTCAACAATAAATTCACTGACGTTGGTGGAAATTCTTTATCAGCAATTCAAGTTGCCTATAAACTTTCCGAGATTTTTGGCGTTGAAATCAAAGCGCATGATATTCTTCAAGCAGAAAACATCCAAGATATTACCACTAA------AATCACATTTGCCCACCCGGAATCTTCTGTTTCTGGAGTTATAACAAAACTTCGAGAAGTAAA--------------------A------------------------------------------GATTCAAAATGTAACATTTATATAATTCATGCAATTGGTGGCACAATTCTCCCATATTATTCTTTCCTCCgagttttcccaaaaaatgtctcgCTCTATGGTattgaattcaatttgaaGTATCCATCAAATAATTTGAGGGAATTGACACAATTTTATGCTAGAGAGGT--
i caeAng1.scafRNAPATH9  C 0 C 0

a score=0.000000
s ce10.chrX              5440853 72 + 17718866 TTAAATCTGGAGTACGGCCATTGAGAAAGTGGCTTAAAACATTAATATAGTGCCAATTGTCATTTGAAAAAC
e caeAng1.scafRNAPATH9     23212  0 +    24476 C
e caePb3.Scfld02_0       3727043  5 +  4147112 I
e caeJap4.Scaffold18194   576991  2 +   823664 I
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56548 25 -  1189296 I
e caeRem4.Crem_Contig0   2203825  3 -  4500979 I

a score=-1931.000000
s ce10.chrX              5440925 24 + 17718866 TTTTATAAAAAGTCAGGATTTTTT
s caeRem4.Crem_Contig0   2203828  9 -  4500979 ---------------GCATTGTTA
i caeRem4.Crem_Contig0  I 3 I 25
s caeSp111.Scaffold626     56573 11 -  1189296 -------------caaaatttttt
i caeSp111.Scaffold626  I 25 C 0
s caePb3.Scfld02_0       3727048 11 +  4147112 -------------CAAGACTATTT
i caePb3.Scfld02_0      I 5 I 3
s caeAng1.scafRNAPATH9     23212  9 +    24476 --------------AGAGTTTTT-
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   576991  2 +   823664 I
e cb4.chrX              10791737 36 + 21540570 I

a score=0.000000
s ce10.chrX              5440949 20 + 17718866 TTTTGATATTAAAAGGGTTC
e caeAng1.scafRNAPATH9     23221  0 +    24476 C
e caePb3.Scfld02_0       3727059  3 +  4147112 I
e caeJap4.Scaffold18194   576991  2 +   823664 I
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584  0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=-3839.000000
s ce10.chrX              5440969 65 + 17718866 AAGCATTCGACAGTGCTTTAGATTTTCCAAATTAGTACAATCGCAGTTTTCACAAATTTTTACTC
s caePb3.Scfld02_0       3727062 23 +  4147112 -AGCa-----------------------------------------ccttcaataattttcattc
i caePb3.Scfld02_0      I 3 C 0
s caeAng1.scafRNAPATH9     23221 19 +    24476 ----------------TATAGATTC-----------------------------AATTCCAGTT-
i caeAng1.scafRNAPATH9  C 0 C 0
e caeJap4.Scaffold18194   576991  2 +   823664 I
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584  0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=330.000000
s ce10.chrX              5441034 14 + 17718866 GAAATAAAACAATT
s caeAng1.scafRNAPATH9     23240 12 +    24476 --AACAaagtgaat
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3727085  0 +  4147112 C
e caeJap4.Scaffold18194   576991  2 +   823664 I
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584  0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=273.000000
s ce10.chrX              5441048 1 + 17718866 A
s caeJap4.Scaffold18194   576993 1 +   823664 a
i caeJap4.Scaffold18194 I 2 C 0
s caeAng1.scafRNAPATH9     23252 1 +    24476 a
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3727085 0 +  4147112 C
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584 0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=-231.000000
s ce10.chrX              5441049 55 + 17718866 AAAAATTGTTTGAAAAAATTTATTATGAAATTTAGGCATTTTAGAAGTATAGAAA
s caeJap4.Scaffold18194   576994 36 +   823664 aaaaaGTGT------AAGATTATTGGTTAGTCTTGGAAATTT-------------
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     23253  0 +    24476 C
e caePb3.Scfld02_0       3727085  0 +  4147112 C
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584  0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=0.000000
s ce10.chrX              5441104 48 + 17718866 TAGTTTTTAATCACTTCCCCATTAATCATACTCACCCGTTAAACACGT
e caeAng1.scafRNAPATH9     23253  0 +    24476 C
e caePb3.Scfld02_0       3727085  0 +  4147112 C
e caeJap4.Scaffold18194   577030  0 +   823664 C
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584  0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=302.000000
s ce10.chrX              5441152 6 + 17718866 TTTTCA
s caeAng1.scafRNAPATH9     23253 6 +    24476 tttttg
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3727085 0 +  4147112 C
e caeJap4.Scaffold18194   577030 0 +   823664 C
e cb4.chrX              10791737 36 + 21540570 I
e caeSp111.Scaffold626     56584 0 -  1189296 C
e caeRem4.Crem_Contig0   2203837 25 -  4500979 I

a score=845.000000
s ce10.chrX              5441158 1 + 17718866 C
s cb4.chrX              10791773 1 + 21540570 C
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   2203862 1 -  4500979 C
i caeRem4.Crem_Contig0  I 25 C 0
s caePb3.Scfld02_0       3727085 1 +  4147112 c
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   577030 1 +   823664 C
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     23259 1 +    24476 t
i caeAng1.scafRNAPATH9  C 0 C 0
e caeSp111.Scaffold626     56584 0 -  1189296 C

a score=272878.000000
s ce10.chrX              5441159 284 + 17718866 AGATTGCCGCACATGCCGGAAACAAGAGAATCTTCGTTATGGGGCACTCGATGGGTGGAATAATGAGTCGCGAAATAGTGGCTGAGCTCAAAATTTGGGGATATGACATTCCCTTCGTAATGCTCTTCGACTCTTGGGTGCTCAGAACAAACGAACTCGACATTGAGAACATAAAGCAATTCATCACAGTAAG---ACTTTGAAATAAATTGCCTTCAAACTA--------AAACCTTTTTTAGTACGTCTTCTCTGGACTACCGGATAGTGAGCATCGTATTAATAGAGCGGTA
s cb4.chrX              10791774 285 + 21540570 AGATCGCTGCTCATGCCGGCCAGAAGCAAATCTTTGTCATGGGCCACTCAATGGGAGGAATTATGAGTCGTGAAATCGTggcagaattgaaaatctgGGGATACCAAATACCATTCGTAATGCTTTTTGATTCTTGGGTTCTTCGAACGAACGAGCTGGATATCGAAAATATTAAGCAATTCATCACTGtgag-----tttgaaaatatttatctAAAAACACTT--TCCAGTAT---TTTCAGTACGTTTTCTCCGGCCTTCCAGATAGTGAACATCGAATTGATAGAGCGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2203863 289 -  4500979 AGATTGCTGCTCATGCCGGAGAAAAGCAAATCTTTGTTATGGGTCATTCGATGGGAGGAATTATGAGTCGCGAGATAGTAGCAGAACTAAAAATTTGGGGTTATGAAATCCCATTCGTCATGCTATTTGATTCATGGGTCCTCCGAACTAATGAACTTGACATTGAGAATATCAAACAATTTATTACGGTAagtacatttttaaaatttgaatctaATATCTGTT------GTATCTATTGCAGTATGTCTTCTCCGGCCTTCCAGACAGTGAACATCGTATTGATAGAGCGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     56584 239 -  1189296 agatcgCTTCACATGctggaaacaaaagaatatttGTTATGGGACATTCAATGGGAGGAATCATGAGTCGTGAAATAGTTGCTGAACTCAAGATTTGGGGTTATCAAATTCCATTCGTTATGCTTTTCGACTCTTGGGTACTTCGAACCAATGAACTTGATATTGAGAATATCAAACAATTCATCACA--------------------------------------------------------TACGTCTTCTCTGGTCTACCAGATAGTGAACATCGTATTGATAGAGCAGTA
i caeSp111.Scaffold626  C 0 I 29
s caePb3.Scfld02_0       3727086 283 +  4147112 aGATTGCTGCTCATGCCAATGGAAAGAGAATCTTTGTTATGGGACATTCAATGGGAGGAATAATGAGCCGTGAAATTGTAGCAGAGCTGAAGATCTGGGGATATGATATTCCATTCGTGATGTTATTTGACTCATGGGTGCTCAGAACGAATGAACTGGACATTGAGAATATCAAACAATTCATCACAGTAAGTCAGATAGATAAGaagttttctgata------------aaaactatttcagtACGTCTTCTCCGGTTTACCAGATAGTGAACATCGAATTGATAGAGCGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   577031 290 +   823664 AGATTGCGGCACATGCTGGAGACAAACGAATCTTTGTGATGGGACATTCAATGGGAGGAATTATGAGCCGTGAGATTGTAGCAGAGCTCAAGATTTGGGGTTACGATATTCCGTTTGTAATTCTCTTCGACTCCTGGGTGCTAAGAACGAATGAGTTAGATGTTGAAAATATCAGACAGTTTATTACAGTGAG---TTGCTAATATTGATAATCTAATAATGTTGAAACGGCAACTTTTTTCAGTACGTCTTTTCCGGACTTCCAGATAGTGAACATCGAATCGATAGAGCTG--
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     23260 239 +    24476 agatcgCTGCTCATGCCAAATCCAAACAAATCTTTGTAATTGGTCATTCTATGGGTGGAATTATGAGTcgtgaaattgttgaagagctcaaaatgtgGAATTATAAAATCCCATTTGTTATGATGTTTGATTCTTGGGTGCTTCGAACAAATGAGCTGGATCTTGATAGCATTAAAAAGTTCATCACT--------------------------------------------------------TATGTGTTCTCAAGATTACAAAACAGTGAGCAATATATTGAAGGAGCGGNN
i caeAng1.scafRNAPATH9  C 0 I 64

a score=-24654.000000
s ce10.chrX              5441443 34 + 17718866 GATAAATCAA--TTTTC----AGTTTGGATTT--------CACACTAT---------
s cb4.chrX              10792059 30 + 21540570 --------------tgc----ttttggaattttaattgaaaaactcaG---------
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2204152 32 -  4500979 --------------TGCATATTTTTGTTATCT--GTTCCTCtagttat---------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3727369 35 +  4147112 ----AA--AA--TATTC----TGATGAGATTTC-CTtctccaaattat---------
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   577321 24 +   823664 -------TAACTCATTC----TTTCTGggttc--ttt--------------------
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     23563 43 +    24476 -----------gtttgcact-tttttgggTGT--GGCTTTCGCATTGAAGGAATAAA
i caeAng1.scafRNAPATH9  I 64 C 0
e caeSp111.Scaffold626     56823 29 -  1189296 I

a score=146015.000000
s ce10.chrX              5441477 123 + 17718866 TTTTGT--------TT--CAGATCAAACTAGCCCAGCTTCTTCGAGAATACAAAACCTCAGTCTCCGACACAAAATTATATTTATTCAAAAGCAAACAGCTTGGGGACGCCGCGTTCAAGAAAGCTGTTCGGT
s cb4.chrX              10792091 125 + 21540570 TTCAAT--------TTTGCAGATCAAACTCGCTCAACTTCTCCGAGAATACAAGACCTCCGTGTCTGATACCAAACTATACCTGTTCAAAAGCAAACAACTTGGAGATGCCGCCTTCAAAAAAGCTGTTAGGT
i cb4.chrX              I 2 I 40
s caeRem4.Crem_Contig0   2204186 123 -  4500979 tttaa----------ttgtagatcaaactcGCTCAACTTCTCAGAGAATACAAAACTTCAGTTTCCGACACCaaattatatttattcaaGAGTAAGCAGCTTGGAGATGCTGCGTTCAAAAAAGCTGTTAGgt
i caeRem4.Crem_Contig0  I 2 I 7
s caeSp111.Scaffold626     56852 123 -  1189296 TTTTGG--------TT--CAGATAAAACTCGCTCAACTTCTCCGAGAATACAAAACTTCTGTCTCCGATACTAAATTATACTTATTCAAGAGTAAACAACTCGGTGATGccgctttcaaaaaagcagtCAGGT
i caeSp111.Scaffold626  I 29 I 3
s caePb3.Scfld02_0       3727405 125 +  4147112 ttttat--------tttacagatCAAACTCGCTCAACTTCTCAGAGAATACAAAACTTCAGTCTCGGACACCAAGTTGTACTTATTCAAGAGTAAACAACTGGGAGACGctgctttcaaaaaagctgtcaGGT
i caePb3.Scfld02_0      I 1 I 4
s caeJap4.Scaffold18194   577345 133 +   823664 ttttgcaatgaaTGTTTTCAGATGAAACTTGCTCAGCTTCTCCGCGAATATAAAACAACAATTTCCGATACCAAATTGTACTTGTTCAAGAGTAAAAAACTTGGCGATGCCGCGTTTAAAAAAGCTGTTCGGT
i caeJap4.Scaffold18194 C 0 C 0
s caeAng1.scafRNAPATH9     23606 123 +    24476 ----------TGAgatttcagctgaaattggCAAAACTTTTACGTGAATATAAAACATCGGTGAGCAATACAAAGTTATATTTGTTCAAGAGTAAACAACTTGGTGAGGCTGCGTTCAAAAAAGCTGTTAGGT
i caeAng1.scafRNAPATH9  C 0 I 314

a score=-9064.000000
s ce10.chrX              5441600 36 + 17718866 AAGCATTATAGG----GCAGGTAACATGACGATCATATTA
s caeRem4.Crem_Contig0   2204316 35 -  4500979 aaattttgttat----atttATAATAACATG-CCaaattt
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626     56978 28 -  1189296 --ACTTTgcatg---aatttttaattg-------aaagta
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3727534 29 +  4147112 ATACTAGGTCTG----TTTATCcagga-------aaattg
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   577478 40 +   823664 AAATATTAGTAtctaaatttcaaataaataaacaaaattt
i caeJap4.Scaffold18194 C 0 C 0
e caeAng1.scafRNAPATH9     23729 314 +    24476 I
e cb4.chrX              10792216 40 + 21540570 I

a score=-778.000000
s ce10.chrX              5441636 1 + 17718866 A
s caeRem4.Crem_Contig0   2204351 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626     57006 1 -  1189296 a
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3727563 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   577518 1 +   823664 t
i caeJap4.Scaffold18194 C 0 I 2
s caeAng1.scafRNAPATH9     24043 1 +    24476 a
i caeAng1.scafRNAPATH9  I 314 C 0
e cb4.chrX              10792216 40 + 21540570 I

a score=107610.000000
s ce10.chrX              5441637 106 + 17718866 TTTTGCAGCTCTGATTTGAACGAAGAACTTTCTCGATCCATGACATGCAATGGATTTGATGAACTGTCTCTGCAGCCAGTTGAAACTTATTTGGTATGAAAAA--AAG
s cb4.chrX              10792256 108 + 21540570 TTTTACAGAGTGGATCTGAACGAGGAACTGTCCAGATCAATGACTTGCAACGGTTTTGATGAGCTCTCTTTGCAACCAATCGAAACATATTTGgtatgattttcagtt
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   2204357 106 -  4500979 ttttttagAGTCGATCTGAATGAGGAACTGTCTCGATCTATGACTTGCAACGGATTCGATGAGTTATCCCTCCAGCCGATTGAAACCTACTTGGtaagaaatt--gtt
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626     57010 100 -  1189296 gttttcagaactgatttgaatgaagagCTGTCGAGGTCGATGATTTGCAATGGATTCGATGAACTGTCTCTCcaacaaattgaaacttaTTTGGTTA--------GTT
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3727567 100 +  4147112 tttttcagagtggaCTTGAATGAGGAGCTTTCAAGATCAATGACCTGCAATGGATTCGATGAGCTTTCTCTCCAGCCTATCGAAACTTATTTGGTAT--------GTT
i caePb3.Scfld02_0      I 3 I 5
s caeJap4.Scaffold18194   577521 100 +   823664 tttttcagaactGATTTAAACGAGGAACTGTCTCGATCAATGACTTGTAATGGATTCGACGAATTGTCTCTTCAACCAATTGAAACTTTTTTGGtaa--------gta
i caeJap4.Scaffold18194 I 2 I 352
s caeAng1.scafRNAPATH9     24044  94 +    24476 ttttccagatcTGACTTGAACGAGCAACTGTGTCGCTCAATGACTTGCAACGGTTTCGATGAACTCTCACTCCAACCAATCGATACATATTTGG--------------
i caeAng1.scafRNAPATH9  C 0 C 0

a score=85258.000000
s ce10.chrX              5441743 142 + 17718866 ATAATT-----TAATTTAATATCGACATTCTTTA-----AACCT-----TCAATTACAGATTGATGGGGATCACGAGTCATGTCTTAAAGCTGAGAATTTGAAGAAAGTGAAGGACTTAGTTCTTGCTCCGTTCCAGCCATATTTCGAGCAGGCTTA
s cb4.chrX              10792364 135 + 21540570 ttcactTCTCACAATtc-gtag--------tttg-----aa--------atttttctagattgaTGGTGATCACGAGTCGTGCTTGAAAGTGGAGAACTTGAAGAAGGTGAAGGATTTCATTCTCGCTCCATTCAAACCGTATTTCGATCAAGCTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2204463 138 -  4500979 ttcaat-----cgGTTc-atat--------ttaa-----caaaaaaagtactttttcagattgacgGCGACCACGAATCCTGTCTCAAAgccgaaaacttgaaaaaagtgaaggatTTGATTCTTGCACCCTTCAAACCTTATTTCGATCACGCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     57110 138 -  1189296 TTCATC-----CTATTCAGTAT--------TTTT-----GActataat-tttctttcagattgaCGGTGACCACGAATCctgtttgaaaattgagaatttgaagaaagtgaagGACTTGATACTTGCCCCATTCAAACCATATTTTGATGAAGCTTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3727672 136 +  4147112 ATAATT-----CAACTCCGTGA--------GTTC------ATCAGaa--ttaatttcagattgatggAGACCATGAATCCTGCCTGAAAGCTGAGAACttgaagaaagtgaaggaCCTCATCCTCGCTCCGTTCAAACCATACTTTGACCAAGCCta
i caePb3.Scfld02_0      I 5 I 30
s caeJap4.Scaffold18194   577973 130 +   823664 ttggcT-----CAAAACCATAT--------TTAT-----ACACAT----TAATTTTCAGATTGATGGTGATCACGAATCATGCTTGAAAATTGAGAACTTGCGAAAGGTCGAGGATTTCATCATGGCGCCATTTAAACCATATTT-----AAACTGA
i caeJap4.Scaffold18194 I 352 I 5
s caeAng1.scafRNAPATH9     24138 131 +    24476 TTAGTT-----ATATTTTGTCT--------TTCTCTaacaattaaaa--aacattCCAGATAAACGGCGATCACGAAAGTTGTCTCGATGCCAAAAACCTGTTAGAAGTCAAAGATTTAATTCTTGCGCCATTTTCACCATATTTT-----------
i caeAng1.scafRNAPATH9  C 0 C 0

a score=-10340.000000
s ce10.chrX              5441885 16 + 17718866 ATAA--TATAACGAATTC
s cb4.chrX              10792499  1 + 21540570 -------A----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2204601 11 -  4500979 -------ATTCTGAATTc
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626     57248  5 -  1189296 -------------ATTAt
i caeSp111.Scaffold626  C 0 I 9
s caeJap4.Scaffold18194   578108 16 +   823664 ACAA--TACAATAATTTC
i caeJap4.Scaffold18194 I 5 I 3
s caeAng1.scafRNAPATH9     24269 16 +    24476 -TAATCTAAAATGatgc-
i caeAng1.scafRNAPATH9  C 0 C 0
e caePb3.Scfld02_0       3727808 30 +  4147112 I

a score=-14903.000000
s ce10.chrX              5441901 39 + 17718866 TTTATTTGAATAA--A---ATGCATCATTCAATTT--------------TTTGTTTGT-
s cb4.chrX              10792500 45 + 21540570 --------AATAC-TG---ATGCAGCTATTAAATAATATAATCTTCAT-TTTGTTTAT-
i cb4.chrX              C 0 I 60
s caeRem4.Crem_Contig0   2204622 51 -  4500979 tttattttaataa--a---atgcATCACTTCAATA--ATAACTTGTATATTTGTTTAA-
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626     57262 48 -  1189296 tttatttgattcaaTAAATGTATTCTTATTAAAAA---------GAAC-TTTGCTTAT-
i caeSp111.Scaffold626  I 9 I 2
s caePb3.Scfld02_0       3727838 50 +  4147112 tttattcaaataaacg---GCTTTCATCTTGAACG---TTCTGTGTAC-TTTTCTC-T-
i caePb3.Scfld02_0      I 30 I 2
s caeJap4.Scaffold18194   578127 32 +   823664 tttataataataa-ta---at----------aata-----------aa-gctATTTAT-
i caeJap4.Scaffold18194 I 3 I 4
s caeAng1.scafRNAPATH9     24285 39 +    24476 ttttttgaaataa------atgttttcattcgaga--------------tttttttctt
i caeAng1.scafRNAPATH9  C 0 C 0

a score=294.000000
s ce10.chrX              5441940 1 + 17718866 C
s caeRem4.Crem_Contig0   2204673 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     57312 1 -  1189296 T
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3727890 1 +  4147112 T
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   578163 1 +   823664 T
i caeJap4.Scaffold18194 I 4 C 0
s caeAng1.scafRNAPATH9     24324 1 +    24476 c
i caeAng1.scafRNAPATH9  C 0 N 0
e cb4.chrX              10792545 60 + 21540570 I

a score=-15196.000000
s ce10.chrX              5441941 59 + 17718866 CAGCAAGAGGTTCCCAGATCAATTTGAAAAGTCATT--------TTCTTCCGGTGGTCTTTCCCAAA----------
s caeRem4.Crem_Contig0   2204674 51 -  4500979 CA-TAGAAATTTCTCA---TGCTTT--CATCTCATC----------ATTCACGTCGTTCTATCCAGA----------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     57313 39 -  1189296 CA-AAGAGCGTTCACGAGTTGTT------TTCCACA---------------------TGTTCTCAAC----------
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3727891 44 +  4147112 C-------------CAACTTGTTCC--CATTTCACA--------TTAGTCCAGTCGTTATTTCCAAG----------
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   578164 76 +   823664 CA-ACAAATGTTTTCTCAGTGATTTgatattgaacaaaaaagtgaACATCAAGCCATAATTCGAAAAAGCTCCCCAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10792545 60 + 21540570 I

a score=4749.000000
s ce10.chrX              5442000 39 + 17718866 AACCTATTCATAGGTTTT---TAGCGCCGGAAGTATACATGC
s cb4.chrX              10792605 28 + 21540570 aaaacattttcccaTGCC---CGCCAC--------TCT---C
i cb4.chrX              I 60 C 0
s caeRem4.Crem_Contig0   2204728 36 -  4500979 AGTATGTTTACCGCTTCC---TACCTCCGGAAGTATAC---C
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     57358 36 -  1189296 GGCTAGTTGTGCACTTCC---TATTGTCGGAAGTGTCT---C
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3727941 36 +  4147112 GATATGTTTATAACTCCC---TACCACCGGAAGTATAC---C
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194   578240 42 +   823664 AACCTGTTTACAACTTCCGCTCTTCTCCGGAAGTATATATAC
i caeJap4.Scaffold18194 C 0 I 799

a score=-23636.000000
s ce10.chrX              5442039 104 + 17718866 TATTTATGATGTCAAT-GGCATCCTGCAAATTTGACAGAAACTACATTTTTCAGATAAAAAAAATGATAAAAAAACCTAAAAAGGTGCTAAACGTGTTGGATATT
s cb4.chrX              10792633  67 + 21540570 CATTCATTCAGTCGAAGCACATCGTTCAAGT-------------CGTTTTCTCT---------ATTGAAGAAGAACGAAAAAGAGT-CTG---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2204764  42 -  4500979 AATTCAT----------AATGTCATTCAAA------------------------------------GTAGGAAAAGCTAAAATAGT--TC---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     57394  27 -  1189296 AAGccattctg------------at-----------------------------------------gaaaaa----cagATATT---------------------
i caeSp111.Scaffold626  C 0 I 26
s caePb3.Scfld02_0       3727977  42 +  4147112 AACCCATTGAGAAAGG-AATGTCAT-----------------------------------------GTAGAATTGCCaagcttt---------------------
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18194   578282 799 +   823664 I

a score=-7158.000000
s ce10.chrX              5442143 60 + 17718866 TTTGTAAGATAGAAGATAAACTGAGTTTGCGCCGCTTTTCAAAAAATCTAAAAGCACTTA---
s cb4.chrX              10792700 14 + 21540570 TTT-------------------------------------------------ACAACTTCCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2204806 11 -  4500979 TTT-------------------------------------------------ATTACTTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3728031 16 +  4147112 tttgaa-------------------------------------------aaaatgagtc----
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18194   578282 799 +   823664 I
e caeSp111.Scaffold626     57421 26 -  1189296 I

a score=-88654.000000
s ce10.chrX              5442203 405 + 17718866  
s cb4.chrX              10792714 348 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2204817 325 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     57447 349 -  1189296  
i caeSp111.Scaffold626  I 26 C 0
s caePb3.Scfld02_0       3728047 335 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   578282 799 +   823664 I

a score=236434.000000
s ce10.chrX              5442608 545 + 17718866  
s cb4.chrX              10793062 695 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205142 552 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     57796 566 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3728382 565 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   579081 604 +   823664  
i caeJap4.Scaffold18194 I 799 I 62

a score=-31904.000000
s ce10.chrX              5443153  82 + 17718866 AATGGACAGACTAAAAGTTAAAT--ATAGAAATGT-CTTCTCAAGGTTTTGTCTTAAAAGTTTACATTTT-----------------------------------------------------------CTTTTAAAAAACACG---------------------------
s cb4.chrX              10793757 156 + 21540570 CATCGCAAGA--AAAAGATAAAGCTATACGAAAGTGCTCATAAATGTTCCA-------ACATCACTTTTC--CTATTCTGaattattttctgaatgtttgatGATATGACTTCCCTCCCCCCAAAAGCTCTTTTTAATAGAATTAATTAATC----GAAGGCAAAAGTata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205694  87 -  4500979 GATCacataa--aataattgaaa--aaacaaac---ctCCTAGATCTTCTA-------A----------------------------------------------------------------------CCTTTCAAAAGAATTGATGCATCtaaagaagatagaagagtG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58362  71 -  1189296 ctctgtgaaa--aaagggggaag--aaTGAGAA---TACG------------------AGAACACTT-----CTAGATACGGAtaac------------------------------------------cttttcaaaaatag----------------------------
i caeSp111.Scaffold626  C 0 I 46
s caePb3.Scfld02_0       3728947  78 +  4147112 --------aa--aaaacatggcT--TATCAAAG---TTCGTTGGCATATTGTTC----AGATCAATTTGCCGCTAGGCTTGGTTG----------------------------------------------TTTCAAATCCCG----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   579685  62 +   823664 I

a score=-8289.000000
s ce10.chrX              5443235 51 + 17718866 ----TTCTTTGGCTCCGTTTCAATTAAGAAATGGGTAATGCAAGCAACGCATCTG-------
s cb4.chrX              10793913 50 + 21540570 ttttctactttt-tcctATTTAATGAAGAAA--TGCAA--AGAGTTTCACATCTT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205781 20 -  4500979 CT-------------------------------CGTAA--ACGTTCCAACATC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3729025 56 +  4147112 --TTCATCTTGGATCTTGTTATATCAACAAA--AGTAA--CATGCTAACTATCGTGAATCTG
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold18194   579685 62 +   823664 I
e caeSp111.Scaffold626     58433 46 -  1189296 I

a score=477.000000
s ce10.chrX              5443286 12 + 17718866 CTCGAACTTTAT
s cb4.chrX              10793963 10 + 21540570 CTC--actttat
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3729081 20 +  4147112 I
e caeJap4.Scaffold18194   579685 62 +   823664 I
e caeSp111.Scaffold626     58433 46 -  1189296 I
e caeRem4.Crem_Contig0   2205801  0 -  4500979 C

a score=-1403.000000
s ce10.chrX              5443298 29 + 17718866 GGTATACTTCCCTCAAAGAAATTCAATTT
s cb4.chrX              10793973 25 + 21540570 ---gatttttcatctaaaaacACTTGTT-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3729101 15 +  4147112 GTTATCCTTCCTTCT--------------
i caePb3.Scfld02_0      I 20 C 0
e caeJap4.Scaffold18194   579685 62 +   823664 I
e caeSp111.Scaffold626     58433 46 -  1189296 I
e caeRem4.Crem_Contig0   2205801  0 -  4500979 C

a score=-31695.000000
s ce10.chrX              5443327  93 + 17718866 -----TGTTCCAAGTTTGACGTAGTTCTGTTTGTTGAATG--------------------CGTTCT----TAGTTGGTCTAGGATTTTTAGGAAATATCAAAAGTTAAGCATTTGTTTGCAA---------------------------------------------------------
s cb4.chrX              10793998 113 + 21540570 TGTTCTTTTTTAGAAAC-----------GTTAGC--ACTGCCATCAATTTGAAGCTTAgcgatttcttttttgtttcttt-gtattttttg----------aaattgatagatGGTCCGAAAAATAAT------------------------------------------CTTACTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205801  63 -  4500979 ---TCTTTTTTAGGA------------------C--ACTA--------------------AATTCC------------------cttttcg----------aaactgaaaaatgcttttagaaagaat------------------------------------------cctatt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58479  71 -  1189296 -----TGTTCCAAGATCATCTTTGTCTTTTTAGT--TCGa--------------------ccttct------------------tttc--------------aattaaa------tGTAAAAGGACCC---------------------------------------GCacataa----
i caeSp111.Scaffold626  I 46 I 1
s caePb3.Scfld02_0       3729116  99 +  4147112 -----TGTTTTAA---------------TTCAGT--CCTA--------------------TGCTCT------------------ATTTTTG----------GGATTAAA------TATGAGGAAAAACAGGCGGAAATTCCTATGGAGAACATTTCAAGTAGATGAGGCCCATAA----
i caePb3.Scfld02_0      C 0 I 275
e caeJap4.Scaffold18194   579685  62 +   823664 I

a score=-5691.000000
s ce10.chrX              5443420 27 + 17718866 TT--------------------------TTGACTTTTAGAAAGACTAAAAACT---
s cb4.chrX              10794111 56 + 21540570 TTACTCATTTCCGTTTTTGAAATCGTTGTCGAAATTGATAGCTGAGGTTTAAACCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205864 28 -  4500979 ----------------------------ttgaaatgaagaaataagaagaaagaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58551 27 -  1189296 ---------------------------attcaatttgaaaaaaaaagaagaaat--
i caeSp111.Scaffold626  I 1 I 158
e caePb3.Scfld02_0       3729215 275 +  4147112 I
e caeJap4.Scaffold18194   579685 62 +   823664 I

a score=-10288.000000
s ce10.chrX              5443447 192 + 17718866 TTCT------------------AAACTTTTC------------TAAATGTTCATAAGAAAATAATAGCT-GCATAGGAGCACTAAACTGGATTCAAATTGATCTGAAATTATATTAGTACACT--------TTTCATTACTTTCGATACTCGTGAAA---------TTGTTCAAAAAGTTGATTTTGCGAAATTTTTGTAATTTTGATAGGGTTCCGGGGTAATAAGTCA----------------GTTTGCAAGG
s cb4.chrX              10794167 229 + 21540570 AGTTAGCTAGTGCAGATTACTCAGACTTGGTATACTGTAGTCGTTAATATTTGTTTCAAACTAATCTTTGGAATAGGAACA-------GAAAATCAGTAACTTGGAATtagttcttct-------------ttttgtctccgctttttttctagaaaaagtcgacttgttttaaaaa----cttctaaaaactcTCTG-ACCCAGGATCAAATTTCGGCCCAGGA--TCAAAGGCACATCAAAGAAGAATAtatca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2205892 158 -  4500979 agtt---------------------cttcgt------------------tctattttcaattaagGAATGGAATGGGTAC--------GAGGTACAGCTGCTCAAATTTAATGGTACTACCCCGAGCAAGATTTCATTTCGTTCTCTATTTTTGCACgtcttcagttttctcaagaa----attt------atttttg-------------gtttcagttcagta--tca--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3729215 275 +  4147112 I
e caeJap4.Scaffold18194   579685  62 +   823664 I
e caeSp111.Scaffold626     58578 158 -  1189296 I

a score=137.000000
s ce10.chrX              5443639 15 + 17718866 TGTTTGAAAATTATC--
s cb4.chrX              10794396 15 + 21540570 agttttcagtttaCA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2206050 13 -  4500979 --ttttcaaattgga--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58736 17 -  1189296 CATTTGTAAAATATAAT
i caeSp111.Scaffold626  I 158 C 0
e caePb3.Scfld02_0       3729215 275 +  4147112 I
e caeJap4.Scaffold18194   579685 62 +   823664 I

a score=-36824.000000
s ce10.chrX              5443654 149 + 17718866 ---------------------ACTTT----------TTGGAAAGTTCCCTT--------TTTTAGATACCCTTTTTTAGGTAAAATCAATTTTTAAAAAAATAACAGTATTACATTTT----------TGCGATATTACTTCCAAAAATAAAAA-----------------CA-AAGTCCTACTCTTTTTTAAAGTGAATCCCAAAAGTG----TTCTGT
s cb4.chrX              10794411 170 + 21540570 TTGGTGTATGGGGTATATGGAACCTT----------TGGGTGAGGGCGTTTCAAACAActcttaa-------ttttgaaaaaaagcgaa----aaaggcTGT-AAAGTTTTTTCCGTCCTCCCACATGTAACAGAACGTTGCTTGGAACTAATATATTCTAAGGACTAGGTGA-AACTTT----CTT-----------------GATGTA----GTCT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2206063  82 -  4500979 tACTTTT--------------TCATT----------CGTATACGctctttt--------tctaaa-------ttttt-----------------------------gttattacTGTC-----------------ACGCTTTTGAAAGTGAATA-----------------GA-AGCTAC----C-----------------------------GTAT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58753 103 -  1189296 ---------------------ACTTT----------TCGGAAAGctccatt--------cgtttt-------ttttg--------------------ctcaT-ATACTTATCTTTTTC---------------------CCTTTGAAGTATATATTTAT------------GACCGCCTCAACTCCT-----------------AAAATGACTTCTCTGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3729490 119 +  4147112 ---------------------actttgtttcaaaGCTCCTAAAGCTCGTTC--------CATTTG-------TCttt--------------------ttcataataataatCTCTTTC-----------GGAATTCCCTCCTCAAaagaactcattttt------------ca-aacttcagcCCTT-----------------AAAGCA----CTCTGC
i caePb3.Scfld02_0      I 275 I 21
e caeJap4.Scaffold18194   579685  62 +   823664 I

a score=-3991.000000
s ce10.chrX              5443803 26 + 17718866 CAGTTACACATTAATCCATTATCAAT
s cb4.chrX              10794581 26 + 21540570 TAGATACGGTTCCCTGACTTTcccat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2206145  9 -  4500979 TAGCT-----------------CGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     58856  3 -  1189296 TAG-----------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3729609 21 +  4147112 I
e caeJap4.Scaffold18194   579685 62 +   823664 I

a score=71.000000
s ce10.chrX              5443829 5 + 17718866 TGCAC
s cb4.chrX              10794607 5 + 21540570 cattt
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   2206154 5 -  4500979 CGTTT
i caeRem4.Crem_Contig0  C 0 I 2
s caeJap4.Scaffold18194   579747 5 +   823664 TACAT
i caeJap4.Scaffold18194 I 62 C 0
e caePb3.Scfld02_0       3729609 21 +  4147112 I
e caeSp111.Scaffold626     58859 0 -  1189296 C

a score=231144.000000
s ce10.chrX              5443834 552 + 17718866  
s cb4.chrX              10794630 535 + 21540570  
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   2206161 553 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     58859 539 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3729630 570 +  4147112  
i caePb3.Scfld02_0      I 21 C 0
s caeJap4.Scaffold18194   579752 596 +   823664  
i caeJap4.Scaffold18194 C 0 I 920

a score=26430.000000
s ce10.chrX              5444386 145 + 17718866 T-----------CCGTGGTTG-CTGCCCGACAATAATAAGATGATGAAGAAGAACTTTTTATTGTTTTCATTCGCTCTGCTT---------------TCATCCTGTTTTCAATAGTGTTCTATCCTTCTC----------TCCGCCATTTTTCCAA-------TCACTTCACAGAATAAG----CTCG-CATAA------
s cb4.chrX              10795165 171 + 21540570 TTGCGTGGTGCGCCGTGGTCGCCTAGCCAATGAGaataa---taagaagaagaactttttattgttttcatcACATCTCTCCTGTTTCCTGTTTCCCCTCTCCTCTCTTCT-----------CACCTTTTTTCTAAAGCTCAGGTTTTTCCTCCAA-------TGC--------AGTAAGATTACACAGCATTCAGTGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2206714 158 -  4500979 T-----------CCGCGGTTG-CTGACCAATAAGAATAA---TAAGACGAAGaactttttattgttttcattcgtttcccccctctctctctctctgtcatCCTGTTTTCTATAGGACG---TCCCTTTTTCCCA-----CCTGTTTTTTCTCCAA-------TCA--------CATAAG----CTCAACATAAGTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     59398 126 -  1189296 T-----------CCGCGGTTG-CTGGCCAATAA---------------GAAgaactttttattgttttcatttgctCCCCTC-----------------GTCCTGTTTTCTATAGGGCG---TCTCTATT----------CCCACCTTTTTCACAATCATCTCTCA-------GAATATG----CTCGGCATAG------
i caeSp111.Scaffold626  C 0 I 206
s caePb3.Scfld02_0       3730200 116 +  4147112 T-----------CCGCTGTTG-CTGGCCAATAA---------------GAAgaactttttattgttttcattggCTTCCCTC-----------------ATCCTGTTTTCTATAGTGCG------CTCTT----------CCcaccttttttccaa-------tca-------gAATAAG----CTCGTCATCA------
i caePb3.Scfld02_0      C 0 I 13
e caeJap4.Scaffold18194   580348 920 +   823664 I

a score=-3205.000000
s ce10.chrX              5444531 47 + 17718866 TATGTTATACGGTTTTCT-----CATTCATTATCTACTTTTG--TTAAGTTTCA----------------
s cb4.chrX              10795336 44 + 21540570 TATGTGGTCTAGTT---------CTTCTATTGTTCTGCTTTGA-TTAACCTTGA----------------
i cb4.chrX              C 0 I 66
s caeRem4.Crem_Contig0   2206872 45 -  4500979 CCTGATGTACGATT---------CaatcatttatttttgtcGATTTAAGCTTGA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3730329 70 +  4147112 TACGATGCATCATTTTGTGTAAACgctcatttgaaaattttcattcattctccatatttttcacATCACT
i caePb3.Scfld02_0      I 13 C 0
e caeJap4.Scaffold18194   580348 920 +   823664 I
e caeSp111.Scaffold626     59524 206 -  1189296 I

a score=-6097.000000
s ce10.chrX              5444578 51 + 17718866 --------------------------GTAAAATAG--------------AGTAGGGAACAGTGAAATATGTTAT----GTTAT--AAAATGAATTTC
s caeRem4.Crem_Contig0   2206917 91 -  4500979 Atcaattctttgttttctatt--tttggagaatttagtTCCTTCCCAGCAGTGCAATCTTCTGAAAGGATTTGgttttattatttgaaatgaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3730399 58 +  4147112 --------------TTTTATTGGTTTGGAG-------------------AGCGTGATCATAAAAAAGACCTCGA----GTTATCCGAAGCATTTC--
i caePb3.Scfld02_0      C 0 I 141
e caeJap4.Scaffold18194   580348 920 +   823664 I
e cb4.chrX              10795380 66 + 21540570 I
e caeSp111.Scaffold626     59524 206 -  1189296 I

a score=93.000000
s ce10.chrX              5444629 12 + 17718866 GGCAGGGTTGGT
s caeRem4.Crem_Contig0   2207008  9 -  4500979 ---aagagtgTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3730457 141 +  4147112 I
e caeJap4.Scaffold18194   580348 920 +   823664 I
e cb4.chrX              10795380 66 + 21540570 I
e caeSp111.Scaffold626     59524 206 -  1189296 I

a score=-2799.000000
s ce10.chrX              5444641 66 + 17718866 ACCGAATTGCTGGTTGTAGGACCGACT--------GAGCTATCACCATCTAGAGA-----------TATTTAGTAACATAATGTA
s cb4.chrX              10795446 73 + 21540570 cCCGAATTGC--CTTTTTAGGgccattcgaaaaaaaaactttta--atctAAAAA--------CCCCTTTTGGGGGCacaataaa
i cb4.chrX              I 66 C 0
s caeRem4.Crem_Contig0   2207017 61 -  4500979 ------------CTTGGAAGGTTTATTGGAGGAGAGAGGTACTA--AATTGGAAAAgattcatcttctttt----------ctca
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3730457 141 +  4147112 I
e caeJap4.Scaffold18194   580348 920 +   823664 I
e caeSp111.Scaffold626     59524 206 -  1189296 I

a score=-2684.000000
s ce10.chrX              5444707 26 + 17718866 ATAGAATTTGTCTTTCAACTCAGATT---------
s cb4.chrX              10795519 13 + 21540570 ----acattt---------tcgaaac---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2207078 13 -  4500979 ----aaattt---------tcgaaat---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     59730 26 -  1189296 atagaaattg---------aaaaaagtgttctcca
i caeSp111.Scaffold626  I 206 C 0
e caePb3.Scfld02_0       3730457 141 +  4147112 I
e caeJap4.Scaffold18194   580348 920 +   823664 I

a score=18248.000000
s ce10.chrX              5444733 106 + 17718866 ATTTTTCCCA------------------------TTTCCCATTTCG-TG----CAAAATACATCAAACTAATGATACACTCTGTAAATCCCAGAGGTGG-----CCACTTTTTTT--------TTG-----CACGCTTTCACATCTTC--GTGCA
s cb4.chrX              10795532 124 + 21540570 gcttttttcgtttttttttctcctgtcccaaaccaaaaacatttta-tgtcCGTAGAACTCATCTAGTTAATGATGCTGTTGCTccat----------------ccgttttttttttgggttttt------------ttcacttctcccAAAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2207091 116 -  4500979 gttttttgctctttttgg----------------aTATCCATTTCC-TG---ATGGAACCCATCTAGCTAATGATGCTCCCATTGAATCCCAGAGGTgg-----ccactttttttttg-----ttg-----cacgAATTCACTTTTCC--GTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     59756 106 -  1189296 attttttcgg------------------------atATCCATTTCC-TG---ATGAATTCCATTAAACTAATGATGTTCTTCGTATATCCCAGAGGAGA-----ccacactttttt-------ttg-----ccCGAATTCACTTTTCC--GTG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3730598 117 +  4147112 atttttcgcg------------------------GAATCCATTTCCGCA---ATTGAGTCCATCTGGCTAATGATGCTCTCTGTAAATCCCTGAGGTGGCTCCTCCCCTTTATTTT-------TTGGACGCCTCGAATTCACTTTTCC--GTG--
i caePb3.Scfld02_0      I 141 C 0
e caeJap4.Scaffold18194   580348 920 +   823664 I

a score=18333.000000
s ce10.chrX              5444839 35 + 17718866 TCATCTAATTCGGTCAAGTGCT------------CG---TTTTCATTCGC
s cb4.chrX              10795656 34 + 21540570 -ATTTTAATTTGGTCAAGTGCA------------TC---TTCTCCCCAGC
i cb4.chrX              C 0 I 17
s caeRem4.Crem_Contig0   2207207 34 -  4500979 -CTTTTAATTCGGTCAAGTGCT------------CG---TCCTCCGtctc
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     59862 37 -  1189296 -ATTTTAATTCGGTCAAGTGCT------------CGCACTTCTCTTTCAT
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3730715 34 +  4147112 -CTTTTAATTCGGTCAAGTGCT------------CG---TCCTCTTTTGT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   581268 46 +   823664 TCACCTAATTCGGTCAAGTGCTATGTACTTCAACCG---TTTTACTCAC-
i caeJap4.Scaffold18194 I 920 C 0

a score=-4129.000000
s ce10.chrX              5444874 25 + 17718866 ------------TCGCGTTTATTTTTT---GTCTCGCGCG
s caeRem4.Crem_Contig0   2207244 18 -  4500979 ------------tctcgtttttttttccat----------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     59902 15 -  1189296 ------------TCTCTCTCATCACTA-------------
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3730752 15 +  4147112 ------------tttcattcagttttc-------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   581314 25 +   823664 TCTTGCTATTTTTCTGACTCATTTC---------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10795690 17 + 21540570 I

a score=143289.000000
s ce10.chrX              5444899 348 + 17718866 -----------------------------CATCTA-CATC------CAGAATTTACCAGCAATTCCAT------CGTGGCGA-TCTATTTTTG-AAATAACCTGGAGTACATTG-----CTGTTCCAACA-----------CTGACTCCTAAATATAACAAATTGTA-TACGATTC------------GATTCCATTGACTATTTGTTTTATGCTCGCCTC---CTCCTCCTCT-------------CTGGTCAATCATTTCGTTGCGCCT--------GTTCGATATACATAATTCG----------TGATTTTTCTATACC----CAGTC-AGAA-TTTCAG------ATGACGATCTTCACTAAGGCCGAA---ACCGACACCGAGAAGAAAACCGTTGAAGGCGTCAAGGAAGACACTCCAAAGGTACGTAAAATATTCAACATTAACTGTTTCTACGTATATTTC
s cb4.chrX              10795707 357 + 21540570 ------------------------------------CACC------GACATTCGTCCCTACCATATTCTTCTCTAGtggt-t-tctatttttgaaaataacctGGAGTACATCTAGTGCCTGTTCCAATA-CAACCGTGTCCTGACTCCTAAATATAACAAATTGTATTACGATTTTC----------CACCCCATTGACTGTTTGTTTTATGCTCTT-------GCCTCCTGC-------------CTGGTCACT--TTTC--CACACCCCATGAACAG-GCGT-ATACAACATTCATTTCGTGATTTGTTTTCCATAAACAATCCatcct-tcat-tttcag------atgacgaTCTTCACCAAGACCGAA---ACCGACACCGATAAGAAAAATGCCGAAGGCGTCAAGGAGGACAACCCAAAGGTAGG---------------------TTTGCTCAAACTTTTC
i cb4.chrX              I 17 I 24
s caeRem4.Crem_Contig0   2207262 322 -  4500979 -----------------------------tctccATTGCC------CAGATTT-TACCAACCATTTGC------AGTGtcgt-tctatttttgaaaataacctGGAGTACATTG-----CTGTTCCAATAGTGACTG---CCTGACTCCTAAATATAACAAATTGTA-TACGAATTT----------------CATTGACTGTTTGTTTTCTGTTCAC--------CCTCCTCT-------------GTGGTCACT--------CGCACCT--------G-TCGTCATACCTCATTCG----------TGATTTCACTAAACA---CCTact-acat-tttcag------atgacgaTCTTCACTAAGACCGAAACCACCGACGCCGAGAAGAAAACTGTCGAAGGCGTCAAGGAGGACACCCCAAAGGTAGG---------------------TTCATGCGTTTTTTGC
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626     59917 328 -  1189296 ------------------------------------TACC-------AGCTTCAACCAATTCTCCCTT------AGTTCcaa-tctatttttg-aaataaccTGGAGTACATTG-----CTGTTCCAATA-CAGTCA----CTGACTCCTAAATATAACAAATTGTA-TACGATTCTCTCTCGTCCCCCCACCTATTGACTGTTTGTTTTATGCTTG---------CCTCCTCT-------------GTGGTCACT--------CGCACCT--------G-TCGGTATACATCATTCG----------TGATTCCACTAACCG----CTACC-GCAA-TTTCAG------ATGACGATCTTTACTAAGACCGAA---ACCGACACCGAGAAAAAGACCGTCGAAGGCGTCAAGGAAGACACCCCAAAGGTAGG----------------AACACTTTTCGAACTCTTTTT
i caeSp111.Scaffold626  C 0 I 39
s caePb3.Scfld02_0       3730767 324 +  4147112 ------------------------------------aaccTCTCTCTAGCTTCTAACCAATCGTTTTT------AGTGAcgattctatttttg-aaataacctGGAGGACATTG-----CTGTTCCAA-------CA----GTGACTCCTAAATATAACAAATTGTA-TACGATTCTCTCT-------CCCCCTTTTGACTGTTTGTTTTATGCTTG---------CCTCCTCT------------GGTGGTCACT--------CGCACCT--------G-TCGGTATACATCATTCG----------TGATTTCACTAACCG---TTTaccaacaattttcag------atgacgatCTTCACTAAGACCGAA---ACCGACACCGAGAAGAAAACTGTCGAAGGCGTCAAGGAGGACACCCCAAAGGTATA-------------------ATTTGTTGAGAGTTTTAG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   581339 363 +   823664 TATTCATCAAAATCAGcctgttagttttttttctg-catt------cagCGCCCTGTCATTCATTCATCCATC-AGtg-----cctattttga-aaataacctGGAGTACATTG-----CTGTTCCAACA-----GA----GCAATTCCTAAATATAACAAATTGTA-TACGATCT------------GACTCGGCT-ACTGTTTGTTTTCTGCTCTTCCCTTTTCCCCCCTCTCTTTCTCATTCTTGTGGTCATT--------T-CACCT--------ACTC---AGGCATTATTAG----------T--TTTGGCCCAACG------CTC-TCGA-TTACAGAGAGACATGACGATCTTCACTAAAACCGAA---ACCGACGCCGAGAAGAAAACCGTCGAAGGAGTCAAAGAGGAAACTCCAAAGGTATG---------------------TGAAAGCGTCCACAT-
i caeJap4.Scaffold18194 C 0 C 0

a score=-6315.000000
s ce10.chrX              5445247 33 + 17718866 --AAATTTTGAAGCAAGTTCTAGAAAAACCAAGTT
s cb4.chrX              10796088 21 + 21540570 --aaatgttcaagttCATTT------------ACT
i cb4.chrX              I 24 I 11
s caeRem4.Crem_Contig0   2207592 18 -  4500979 --AGGTGTTCGA---TATTT------------GCT
i caeRem4.Crem_Contig0  I 8 I 23
s caePb3.Scfld02_0       3731101 21 +  4147112 --agatgttttgagtttttc------------agt
i caePb3.Scfld02_0      I 10 I 15
s caeJap4.Scaffold18194   581702 10 +   823664 GGAAACGATG-------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     60245 39 -  1189296 I

a score=219437.000000
s ce10.chrX              5445280 286 + 17718866 TATTGTAAATTTACTTCGTGTAAAACATATAAGTTTAGCAGGTGGTTGTGTGCGAGGCTGATGAGGAGAAGCACATCAGTAACTGCGGCTGGGTACCAATGGAAGGAGGCAACTTTGACAGGTA---------------TTCCAAAATTCAGTTTTTGCGTAATCCTCCA------GTTTCAGACCAAAGGAAAAAAGAAGCTCGTCTTTCGGACCACTTTCCATAATTCGTCTCTCACCATCTCCACTTGCCCGTACCCCATCTCCATCTCCACCCGACTATGAAAATGCTGTTAATGCTCGCAGG
s cb4.chrX              10796120 274 + 21540570 TATTTTAAACTAAG----------------GGATTTAGCAGGTAGTCGTCTGCGAAGCTGATGAGGAGAAGCACATCAGCAACTGTGGATGGGTTCCGATGGAGGGAGGCAACTTTGAcaggt----------------tttttaaattcttctTTAAT-TAATCACACCCAGATGTTTTTAGGCCAAAGGAGAAGAGAAGCTCCTCATTCGGCCCACTCTCTATTATTCGACTTTCTCCATCACCATTGGCACGTACTCCATCCCCATCACCACCGGACTACGAGAACGCTGTCAATGCTCGCAGG
i cb4.chrX              I 11 I 49
s caeRem4.Crem_Contig0   2207633 277 -  4500979 TTgtggaaaataaa----------acatatgaGTTTAGCAGGTGGTCGTTTGCGAAGCTGATGAGGAGAAGCACATCAGCAACTGTGGGTGGGTACCGATGGAGGGAGGAAACTTCGACCGGTAATA--------TATGCTTAGAGATTCAATACTAAC-TTGTC-----------TATTCAGACCAAAGGAGAAGAGAAGCTCTTCGTTCGGACCACTCTCAATCATTCGTCTTTCTCCATCACCATTGGCCCGTACTCCATCTCCATCTCCACCGGATTATGAAAACGCTGTGAATGCTCGCAGg
i caeRem4.Crem_Contig0  I 23 I 20
s caeSp111.Scaffold626     60284 280 -  1189296 AGTTTTACACTTAC----------ACACATGAGTTTAGCAGGTTGTCGTCTGCGAAGCTGATGAGGAGAAGCACATCAGCAACTGTGGGTGGGTACCAATGGAGGGAGGAAACTTCGACAGGTACTG--------TTCAATATAAAGAT--------GC-TCATAGTGTAAAAGCAATTATAGAccaaaggagaagagaagctCTTCATTCGGACCACTTTCTATCATTCGTCTTTCTCCATCTCCATTGGCCCGTACTCCATCTCCATCTCCACCGGATTACGAAAACGCTGTGAATGCTCGCAGG
i caeSp111.Scaffold626  I 39 I 10
s caePb3.Scfld02_0       3731137 235 +  4147112 TCGTTTAAACTAAC----------ACACTTGAGTTTAGCAGGTTGTCGTCTGCGAAGCTGATGAGGAGAAGCACATCAGTAACTGTGGATGGGTCCCGATGGAGGGAGGAAACTTCGAC--------------------------------------------------------------AGACCaaaggagaagagaagttCTTCATTCGGACCACTCTCCATCATTCGTCTTTCTCCATCACCATTGGCCCGTACCCCATCTCCATCTCCACCTGACTACGAAAACGCTGTGAATGCTCGCAGG
i caePb3.Scfld02_0      I 15 I 7
s caeJap4.Scaffold18194   581712 282 +   823664 ---------GTAAG----------ACACAGTAGTTTAGCAGGTTGTCGTGTGCGAAGCTGATGAGGAGAAGCACATCAGCAACTGCGGATGGGTTCCGATGGAGGGAGGAAACTTTGATCGGTGAGAAGAAAAGTTACACGTTCATAATAATATTTTACATATTCAAAAT------GTTTCAGCCCAAAGGAAAAGAGAAGCTCGTCTTTCGGTCCACTCTCCATCATCCGTCTTTCTCCTTCTCCATTGGCTCGTACTCCTTCCCCATCTCCACCAGATTACGAGAACGCCGTTAATGCGCAAAGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-11617.000000
s ce10.chrX              5445566 43 + 17718866 ---------------------TTTGAGAAATGCATGGATGTA---ATTGAAAGAT---------TGTATATGTTTC--
s caeRem4.Crem_Contig0   2207930 21 -  4500979 ---------------------tctgacaA------------------TCATAGAT----------------GTATT--
i caeRem4.Crem_Contig0  I 20 C 0
s caeSp111.Scaffold626     60574 28 -  1189296 ---------------------ccaaagaa------------------tcaaaaaa---------caagtacGATTT--
i caeSp111.Scaffold626  I 10 I 1
s caePb3.Scfld02_0       3731379 36 +  4147112 ---------------------tttgagaa------------------taagaAACTTCTTACATCAAGTG-ATTTT--
i caePb3.Scfld02_0      I 7 I 1
s caeJap4.Scaffold18194   581994 62 +   823664 TATGTGCATAGCTTTTCGAATTCTgagta-------aatttatttttttatatct---------TGAACGAGCTTTTA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10796394 49 + 21540570 I

a score=118126.000000
s ce10.chrX              5445609 101 + 17718866 CAGAATGCGTCGTTGCACTAAACTCACATTCACGCTCATCTCCATTTTCAGTTTTGTGATTTTGGTTTCTTTCTTCCTCTACCAACAGGGACTTATTAGGT
s cb4.chrX              10796443 101 + 21540570 cagAATGCGCCGCTGCACCAAGCTTACTTTCACACTCATCGCCATCTTCAGTTTTGTCATTTTGGTTTCTTTCTTCCTCTACCAACAAGGACTCATCAGGT
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig0   2207951 101 -  4500979 CAGAATGCGTCGATGCACCAAGCTCACTTTCACACTCATCGCCATCTTCAGTTTCGTTATTTTGGTGTCTTTCTTCCTTTATCAACAAGGACTCATCAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     60603 101 -  1189296 CAGAATGCGCCGTTGCACCAAGCTCACTTTCACACTCATCGCCATCTTCAGTTTCGTCATTTTGgtctctttcttcctttACCAACAGGGACTCATCaggt
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3731416 101 +  4147112 TAGAATGCGCCGTTGCACCAAGCTTACCTTCACACTCATTGCCATCTTCAGTTTCGTCATCTTGGTCTCTTTCTTCCTCTACCAACAAGGACTCATCAGGT
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   582056 101 +   823664 CAGAATGCGTCGCTGCACAAAGCTTACATTCACCCTCATTTCTATCTTCAGTTTTATCATTCTGGTCTCTTTCTTCCTGTACCAACAAGGACTCATCAGGT
i caeJap4.Scaffold18194 C 0 I 35

a score=-293.000000
s ce10.chrX              5445710 2 + 17718866 AA
s cb4.chrX              10796544 2 + 21540570 GA
i cb4.chrX              C 0 I 163
s caeRem4.Crem_Contig0   2208052 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     60704 2 -  1189296 ag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3731517 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   582157 35 +   823664 I

a score=180.000000
s ce10.chrX              5445712 1 + 17718866 A
s caeRem4.Crem_Contig0   2208057 1 -  4500979 A
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     60706 1 -  1189296 a
i caeSp111.Scaffold626  C 0 I 20
s caePb3.Scfld02_0       3731519 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   582157 35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I

a score=546.000000
s ce10.chrX              5445713 2 + 17718866 TT
s caeRem4.Crem_Contig0   2208058 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3731520 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 I 92
e caeJap4.Scaffold18194   582157 35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I
e caeSp111.Scaffold626     60707 20 -  1189296 I

a score=248.000000
s ce10.chrX              5445715 9 + 17718866 ACGAGTTTA
s caeRem4.Crem_Contig0   2208060 9 -  4500979 ATAGTTTTA
i caeRem4.Crem_Contig0  C 0 I 124
e caePb3.Scfld02_0       3731522 92 +  4147112 I
e caeJap4.Scaffold18194   582157 35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I
e caeSp111.Scaffold626     60707 20 -  1189296 I

a score=0.000000
s ce10.chrX              5445724 693 + 17718866  
e caePb3.Scfld02_0       3731522  92 +  4147112 I
e caeJap4.Scaffold18194   582157  35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I
e caeSp111.Scaffold626     60707  20 -  1189296 I
e caeRem4.Crem_Contig0   2208069 124 -  4500979 I

a score=68.000000
s ce10.chrX              5446417 3 + 17718866 TAA
s caeSp111.Scaffold626     60727 3 -  1189296 TAC
i caeSp111.Scaffold626  I 20 C 0
e caePb3.Scfld02_0       3731522 92 +  4147112 I
e caeJap4.Scaffold18194   582157 35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I
e caeRem4.Crem_Contig0   2208069 124 -  4500979 I

a score=-856.000000
s ce10.chrX              5446420 10 + 17718866 ACGTTTAATA----
s caeRem4.Crem_Contig0   2208193 12 -  4500979 --ACattaaattaa
i caeRem4.Crem_Contig0  I 124 C 0
s caeSp111.Scaffold626     60730 10 -  1189296 ACCTATTATA----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3731522 92 +  4147112 I
e caeJap4.Scaffold18194   582157 35 +   823664 I
e cb4.chrX              10796546 163 + 21540570 I

a score=337556.000000
s ce10.chrX              5446430 350 + 17718866 TTTCAGCGTTGCCTACCAAAAGGGAGTGTACCATGGATGGAACGCGGCTACCTTCTCGAACCGTGGAATGACAGAGCGTCTGGTTCAAAATGTCGAAATCAACGCCAACGATTCGTACGAGAAGATCGATGTCCCAAAGTTTGGATCTAACCGACCAGCAATTTTCCTTCACGATTTCAAACAGGT-ACTCCCTCCTATATT--TTTAAAATTTATTTGACCAACTTTTCAATTAT-----------TGACAGAACCTGACGGCTATTGTTGACACTGTTGGAAACCGTTGCTTTGTTAAAGAGCTGGACAGAACAAAAATCAGAAACCCAAGAATGTTGATGGAGATGCTCAGAAATATTGAC
s cb4.chrX              10796709 342 + 21540570 TTTAAGCGTTGCCTACCAAAAGGGTGTATACCATGGATGGAACGCGGCCACCTTCTCGAACCGTGGAACGACCGAGCGTCTGGTTCAAAACGTCGAAATCAACGCCAACGATTCGTACGAGAAGATTGATGTCCCAAAGTTTGGATCTAACCGACCCGCGATCTTCTTGCACGATTTCAAACAGGT-----TCATTGAAATTCATTTGTCATTTG-------GATGC--AAAATTGCTT--------TTTCAGAACCTCACCGCTATTGTTGATACTGTTGGAAACCGTTGCTTTGTCAAGGATTTGGACAGAACCAAGATCCGAAGCCCAAGAATGCTTATTGAGATGCTCAGAAACATTGAT
i cb4.chrX              I 163 C 0
s caeRem4.Crem_Contig0   2208205 342 -  4500979 tttcagcGTTGCCTACCAAAAAGGAGTTTACCATGGATGGAACGCGGCTACCTTCTCTAACCGTGGAACGACTGAGCGTTTggttcaaaatgttgaaatcaaCGCCAACGATTCGTACGAGAAGATTGATGTCCCAAAGTTCGGATCCAACAGACCAGCTATTTTCTTGCATGATTTCAAGCAGGT-----ACTCTGTTGTT--TTTGTAAATTC-------AACTCtttacttttctc--------ttttagAATCTTACTGCTATTGTTGATACTGTTGGAAACCGTTGCTTCGTCAAGGAGTTAGACCGAACCAAAATCAGAAACCCGAGAATGTTGATTGAGATGCTCAGAAACATTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     60740 344 -  1189296 TTTAAGCGTTGCCTACCAAAAGGGAGTTTACCATGGATGGAACGCGGCTACCTTCTCGAATCGTGGAATGACCGAGCGTCTGGTTCAAAATGTCGAAATCAACGCCAATGATTCGTACGAGAAGATCGATGTCCCAAAGTTTGGATCTAACCGCCCAGCTATTTTCTTGCACGATTTCAAGCAGGTAGGTCATTAAGATGGT--TGGAACAAACA-------AACagtttcacatt-----------tttcagaatctcacTGCTATTGTTGATACAGTTGGAAATCGTTGCTTTGTCAAGGAGTTGGACAGAACCAAAATCAGAAACCCAAGAATGTTGATTGAGATGCTCAGAAACATTGAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3731614 344 +  4147112 TTCCAGCGTTGCCTACCAAAAAGGAGTATACCATGGATGGAACGCGGCTACCTTCTCGAACCGTGGAATGACCGAGCGTttggttcaaaatgttgaagtGAACGCTAACGATTCGTACGAGAAGATTGATGTCCCAAAGTTTGGATCTAACCGACCAGCCATCTTCCTCCATGATTTCAAGCAGGTCAGCCCCTTTtaaatt--cttctcattca-------gACACCAAAATAAG-----------TTTTAGAATCTCACTGCTATTGTTGACACTGTTGGAAACCGCTGTTTCGTCAAGGAATTGGACAGAACCAAAATCAGAAACCCAAGAATGTTGATTGAGATGCTCAGAAACATTGAT
i caePb3.Scfld02_0      I 92 C 0
s caeJap4.Scaffold18194   582192 350 +   823664 TCTCAGTGTTGCCTACCAAAAAGGAGTGTATCATGGATGGAACGCAGCCACCTTCTCGAACCGTGGAATGACCGAGCGTCTGGTTCAAAATGTCGAAATCAACGCCAATGATTCGTACGAGAAGATCGATGTCCCCAAGTTTGGATCCAACAGACCAGCTATTTTCCTTCACGATTTTAAGCAGGT-----AACCTGGAAAG--CTTAAAATATA-------AACTTAaaagtgtttttaaaaaacattttagaaccTGACCGCTATTGTTGACACCGTCGGAAATCGTTGTTTTGTTAAAGAGCTTGACAGAACCAAAATCAGAAACCCAAGAATGCTCATTGAGATGCTCCGCAACATTGAC
i caeJap4.Scaffold18194 I 35 I 312

a score=146820.000000
s ce10.chrX              5446780 197 + 17718866 GTG------------------------------------------------------------------ATGGCTCCAGAAGTTGCATACGCACAAACTCGCGTTGTCCGTGAAACATACAACGTTGGAGATGAGCTCACGAAGGCTGATATTAGCACTTTCAACAGCACTATTCTTTCTCGCCACTGTGCGTTCCGGCAAACTTATAAATTGAAGAAACAAGAAGCTCAGTCTCGTTCACGACGAGGt---------aa-------aattaattt----ttt---
s cb4.chrX              10797051 251 + 21540570 GTGAGGagtgaaaattctag-aaaaaaacaagaaatt-----------------cctaaatttcagatcatgGCCCCAGAAGTAGCCTACGCTCAAACTCGCATGGTCCGAGAAACATACAACGTTGGGGATGAGCTCACCAAGGCCGATATCAGCACATTCAACAGTACCATTCTCTCGCGTCACTGTGCTTTCCGTCAAACATACAAGCTTAGAAAGCAGGAAGCTCAGACACGTTCCCGACGAGgtacattgaaaaa-------ttctgaatt----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2208547 241 -  4500979 GTATG--GTTGCTATAATAGTGAAACAGCTTCacatt-----------------tatattttccagattatgGCTCCAGAAGTTGCTTACGCACAAACGCGCGTTGTTCGTGAAACCTACAATGTTGGAGATGAGCTCACCAAAGCTGACATTAGCGTGTTCAACAGCACTATTCTTTCTCGTCACTGTGCATTCCGTCAGACTTACAAGCTCAAGAAACAGGAAGCACAAACCCGCTCTAGACGATGT---------AA-------CTTTACATT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     61084 245 -  1189296 GTAAGATATAGTTATC-----TTAACCATATGAAATG-----------------CAACTTTTATAGATCATGGCCCCAGAAGTTGCCTACGCTCAAACCCGCGTTGTCCGCGAAACCTACAATGTTGGAGATGAGCTCAACAAGGCTGATATCAACACATTCAACAGCACGATTCTCTCCCGTCACTGCGCATTCCGTCAAACTTACCAACTCAAGAAACAGGAAGCACAAACTCGCTCTCGACGAGGT---------AA----AACTCCTGAATTTTCT------
i caeSp111.Scaffold626  C 0 I 21
s caePb3.Scfld02_0       3731958 240 +  4147112 GTA------------------TGAATCGCGTAAAATGATAATTAGTGACAATCCCAGGTTTTTCAGATTATGGCTCCAGAAGTTGCCTACGCCCAAACAAGAGTTGTCCGTGAAACCTACAATGTTGGAGATGAGCTCACCAAGGCAGATATTGGAACATTCAACAGCACTATTCTTTCCCGTCATTGCGCATTCCGTCAGACCTACCAACTCAAGAAACAAGAAGCACAGTCTCGTTCTCGACGAGGt---------aa----------taaaata---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   582854 204 +   823664 ------------------------------------------------------------------GTGATGGCCCCAGAAGTCGCATATGCCCAAACACGTGTTGTTCGTGAGACTTACAACGTTGGAGATGAATTGACCAAGGCTGATATTGGCACCTTTAACAGCACAATTCTCTCACGTCACTGTGCTTTCCGTCAGACCTACAAGCTCAATAAGCAGGAGGCGAAGGCTCGCTCACGACGAGGT---------AATAACCATAAATAAATT-------Aca
i caeJap4.Scaffold18194 I 312 C 0

a score=-2769.000000
s ce10.chrX              5446977 22 + 17718866 ttaag----------attt----aaagatttttaaa
s cb4.chrX              10797302 21 + 21540570 tcaat---------aatt------gaacattcgaaa
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2208788 30 -  4500979 TCAGTCTAATTATAGATt------aataatttgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3732198 17 +  4147112 ---------------attt----gaagaatttcaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   583058 26 +   823664 ttaaa----------atacaaaaaaagaactttaac
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     61329 21 -  1189296 I

a score=180.000000
s ce10.chrX              5446999 1 + 17718866 a
s caeRem4.Crem_Contig0   2208818 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3732215 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   583084 1 +   823664 a
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10797323 5 + 21540570 I
e caeSp111.Scaffold626     61329 21 -  1189296 I

a score=273.000000
s ce10.chrX              5447000 1 + 17718866 t
s caePb3.Scfld02_0       3732216 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 13
s caeJap4.Scaffold18194   583085 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10797323 5 + 21540570 I
e caeSp111.Scaffold626     61329 21 -  1189296 I
e caeRem4.Crem_Contig0   2208819 0 -  4500979 C

a score=216.000000
s ce10.chrX              5447001 11 + 17718866 ttCAAGAAATA
s caeJap4.Scaffold18194   583086 11 +   823664 ttttaaaacca
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3732217 13 +  4147112 I
e cb4.chrX              10797323  5 + 21540570 I
e caeSp111.Scaffold626     61329 21 -  1189296 I
e caeRem4.Crem_Contig0   2208819  0 -  4500979 C

a score=0.000000
s ce10.chrX              5447012 457 + 17718866 TACTATCACTCTTGGTAAAAAAAAACTGCTGCAAAAAAGTGGAAAAAAATTTTTCAGCGGAACTGTGGAGACAAAAATTTAACATTTTTTTGAACTAGCCCAAGCCATAAAAATGTTTTTTGAATTTTCGTCCTTGCGGATCTGAATTTCCGAATCACGCCACGTCGAATTCAGTGCCATTCTTTGTCTTTCCCATTTGCTCAAATTTTACCTTTCTTTTGCTTTGGATTTTGACGTCTGCGCTGCCATAGAATGCAGTCATGGTTTTAGGGTCAtcgtaacggctgacactttttgggtcccgcgccgcaatattcaaaaggcacgggtggcaggcagactgtcgcggtaCGTGTTTCGACGCCTGCAAAGGGGCCTTGTCAGAGGTTGTTCAGAGCAGTTTGAATCAGAATTCCCACAAGTGGCAGTCCATTTTTAATGTTGTTTCTTTCAACCG
e caePb3.Scfld02_0       3732217  13 +  4147112 I
e caeJap4.Scaffold18194   583097   0 +   823664 C
e cb4.chrX              10797323   5 + 21540570 I
e caeSp111.Scaffold626     61329  21 -  1189296 I
e caeRem4.Crem_Contig0   2208819   0 -  4500979 C

a score=91.000000
s ce10.chrX              5447469 1 + 17718866 T
s cb4.chrX              10797328 1 + 21540570 t
i cb4.chrX              I 5 C 0
e caePb3.Scfld02_0       3732217 13 +  4147112 I
e caeJap4.Scaffold18194   583097 0 +   823664 C
e caeSp111.Scaffold626     61329 21 -  1189296 I
e caeRem4.Crem_Contig0   2208819 0 -  4500979 C

a score=-560.000000
s ce10.chrX              5447470 4 + 17718866 AAAT-
s cb4.chrX              10797329 4 + 21540570 gatt-
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   583097 4 +   823664 -attt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3732217 13 +  4147112 I
e caeSp111.Scaffold626     61329 21 -  1189296 I
e caeRem4.Crem_Contig0   2208819 0 -  4500979 C

a score=239914.000000
s ce10.chrX              5447474 576 + 17718866  
s cb4.chrX              10797333 595 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2208819 554 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     61350 567 -  1189296  
i caeSp111.Scaffold626  I 21 C 0
s caePb3.Scfld02_0       3732230 554 +  4147112  
i caePb3.Scfld02_0      I 13 I 3
s caeJap4.Scaffold18194   583101 632 +   823664  
i caeJap4.Scaffold18194 C 0 I 1052

a score=14920.000000
s ce10.chrX              5448050 14 + 17718866 TTGATTTTTTGAAC
s cb4.chrX              10797928 14 + 21540570 ttgatttttcgaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209373 14 -  4500979 TTGATTTTTTGGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     61917 14 -  1189296 ttgatttttcgaac
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3732787 14 +  4147112 ctgattttttgaac
i caePb3.Scfld02_0      I 3 I 2
s caeJap4.Scaffold18194   584785 14 +   823664 TTGATTTCTTGATC
i caeJap4.Scaffold18194 I 1052 C 0

a score=-3511.000000
s ce10.chrX              5448064 13 + 17718866 -ACTTTGCCCAGTT
s cb4.chrX              10797942 12 + 21540570 --ttctgtTCGGGT
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2209387  1 -  4500979 --T-----------
i caeRem4.Crem_Contig0  C 0 I 2
s caeJap4.Scaffold18194   584799 12 +   823664 AATGCTCCCCAT--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3732801  2 +  4147112 I
e caeSp111.Scaffold626     61931  3 -  1189296 I

a score=13708.000000
s ce10.chrX              5448077 33 + 17718866 ATCACGTATGAAACTTGACTGCCGGAAG-TTGGG-
s cb4.chrX              10797967 30 + 21540570 ATCACGTAAGA---CTGATAGCCGGAAA-TCAAG-
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2209390 33 -  4500979 ATCACGTAAGAAGCTTGACTGCCGGAAA-TCGAG-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626     61934 33 -  1189296 ATCACGTCTAAGCATTGACTGCCGGAAA-TTGAG-
i caeSp111.Scaffold626  I 3 I 1
s caePb3.Scfld02_0       3732803 29 +  4147112 -----gtCTGAGCATTAGATGCCGGAAAGTCGAG-
i caePb3.Scfld02_0      I 2 I 14
s caeJap4.Scaffold18194   584811 23 +   823664 ----------AAGCTTGACTGCCGGAAA--CGAGA
i caeJap4.Scaffold18194 C 0 I 15

a score=-820.000000
s ce10.chrX              5448110 1 + 17718866 -G
s cb4.chrX              10797997 1 + 21540570 C-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209423 1 -  4500979 C-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3732832 14 +  4147112 I
e caeJap4.Scaffold18194   584834 15 +   823664 I
e caeSp111.Scaffold626     61967 1 -  1189296 I

a score=-2558.000000
s ce10.chrX              5448111 10 + 17718866 GCTCCTCTCG
s cb4.chrX              10797998  7 + 21540570 ---GTCTACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209424  6 -  4500979 ---A-CTACG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     61968  3 -  1189296 -------GCA
i caeSp111.Scaffold626  I 1 C 0
e caePb3.Scfld02_0       3732832 14 +  4147112 I
e caeJap4.Scaffold18194   584834 15 +   823664 I

a score=-2150.000000
s ce10.chrX              5448121 1 + 17718866 -T
s cb4.chrX              10798005 1 + 21540570 -A
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2209430 1 -  4500979 -A
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626     61971 1 -  1189296 -T
i caeSp111.Scaffold626  C 0 I 11
s caeJap4.Scaffold18194   584849 1 +   823664 G-
i caeJap4.Scaffold18194 I 15 C 0
e caePb3.Scfld02_0       3732832 14 +  4147112 I

a score=149312.000000
s ce10.chrX              5448122 384 + 17718866 TGACGACAATT--------------------------------AGGAGCCTACGA--AAAAACAAATACGGAAACGTGTCAAAACTGGGCGGTATGTCTTGGCA---TCGGGCGATTTTGATTTCATAAAAGGCGATTGCCATTGAAATTTCAACTCCGGTTTCGAGA--CTC--GGCCATTTCGTCTGCT-AATCGTTG--------------CAAGATGCACCATGTTTTCTTGATTCTAGCTATTTCTCTTCCATTAGGTATTATATTTTACATTAATTA----------CTGAATTT-------TATAT---TTTATTCATTT-----GTTC--------------AGTGACAACGTATACTACCAAACCACCGTGTTGTCGAGACCACTTAGGATCAACTGCTTGTTATAAATTGATGCACCAAAATACTAGATTGTTCGCGAAACGGTGTAATACGGACGCAGAATTCAGGTA
s cb4.chrX              10798013 418 + 21540570 TGACGACCATTAAGTGgggaaagagaag---agaaaattaaTAGAGAGACTACGG--AAAAACAAATACGGAAATGTGTCAAATCTGGGCGGTAGTTGTGCCACCATGCCTTTGGTGCCGGTATCATAAAAGGCGATTGCTCATTAGATTTTAACTCCGGTTTCTGATCATTT---ACGgttttct-----------ccc--------------aaaaatgttgtatttctttttcattttagcTCTGTCTTTCCCATTAGG--TAAGTTG----AGTTTTTT----------ACTAACTT-------TTGAAGGGGGTATGAAAAT-----CTTCaacttgagttttctagtAATATCGTACACTACAAAACCGCCATGCTGTCGTGACCACTTAGGAGCAGCTGCTTGTTCGAAGCTAATGCATCAGAATACACGGCTTTTTGCAAAGAGATGTAATTCAGATGCGGAGTTCAGGTA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2209437 399 -  4500979 TGACGACAATTAGAAAAGGAGGaggaat---gcaaaaaaagt-gtgaGACTACGG--AAAAACAAATACGGAAATGTGTCAAAACTGGGCGGTAGCTATAGCTC-----------TGCCGATATCATAAAAGGCAAATTCCGACTACATTTCAACTCCGGTTTCTGTT--TTG---ACCATTTTATCAGAA---GTGCTC--------------GATTATGTTGGTTCCGATTTTGATAATAGCTCTATTTTCCTCAATAGG--TGAGATT----TGTTCTTT--CT-----AAATAAATTATATCCATTGAA---------ACAAT-----GTTC--------------AGTCACTACTTACACTACTAAACCACCATGTTGCCGTGATCATTTGGGGTCCGCGGCTTGCTCAAAGTTGATGCATCAAAATACAAGACTTTTTGCGAAAAGGTGCAATTCTGATGCCGAGTTCAGGTA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626     61983 407 -  1189296 TGACGACAATTAGGAGAGGGGGGATAAGAACGAGAAAA-----GTGAGActacga--aaaaacaaatacgGAAATGTGTCAAAACTGGGCGGTAGCTTTTGCCA----------GCGGCGTTATCATAAAAGGCATTTAGGCGAACAATTTTAACTCCggtttcgatt--ttt----tcgtttcttcagTG---GTGTTCCTATTAACTGTTTTATTGATGtttgttatttttgtgatttcagTTCTATTACCCACTATAGG--ttagtttttagatttttta----------aatatttt-------tttat-------------tatgtgGTTC--------------AGTAACTTCATACACAACCAAACCTCCATGTTGCCGTGATCACTTGGGTTCTGCTGCATGCACCAAACTTTTACATCAGAATACCAGACTGTTTGCAAAACGGTGTAATTCAGATGCGGAGTTTAGGTA
i caeSp111.Scaffold626  I 11 I 67
s caePb3.Scfld02_0       3732846 396 +  4147112 TGACGACAATtaggaaggaggagaaggg---gaaaaaa-----gtgaaaattacg--aaaaacaaatacggaaatgtgtcaaaaCTGGGCGGTAGGCCTGAGCA----------GTGGCGATTTCATAAAAGGCAAATGCCCGAGAAATTTTAACTCCGGTTTCGATT--TTTATCAACGTTCTCCTAGTG-CAGTGTTC--------------ATTGATGTTGGTTGTTATTTTGATTCTAGCACTGTTTTCTTCAGCAGg--ttggtttttgaagtttttatttt-----cgataaCTT-------TGTAT-------------T-----GTTC--------------AGTAACAAGTTATACGACTAAACCTCCGTGTTGTCGAGATCATCTCGGTTCAGCTGCGTGTTCCAAACTAATGCATCAAAACACAAGAATGTTCGCCAAGAGATGTAATTCTGATGCGGAGTTCAGGTa
i caePb3.Scfld02_0      I 14 I 462
s caeJap4.Scaffold18194   584850 380 +   823664 TGACGACAATTACG-----------------------------GGAGGCctacagaaaaaaacaaatacggAATTGTGTCAAAACTGGGCGGTAGACGGTGCGC-----------TGCCGGTGTGATTAAAAGCAATCAACGGCAGATTTTTATATCCGTTTTATatcatttt---cttgttttgccACATTCATTGGAA--------------GCAAATGCTGatttcatttttccttcttattcaaatttttgattttgg--ttagttctttgagttgttttcttgttagtgatattgt-------tttgt-------------------gttt--------------agtgaTACCGTACACCACAAAACCTCCTTGCTGTCGAGATCATCTTGGCAACCCTGCATGTTTCAAATTGTTGAATCAGAATTCAAGGCTTTTTGCTAGACGGTGCAACACAGACGCAGAATTCAGGTg
i caeJap4.Scaffold18194 C 0 C 0

a score=-179.000000
s ce10.chrX              5448506 8 + 17718866 CGGAATTT
s cb4.chrX              10798431 8 + 21540570 CGTAACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209836 8 -  4500979 AGTAACTT
i caeRem4.Crem_Contig0  C 0 I 19
s caeJap4.Scaffold18194   585230 8 +   823664 cctattgt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeSp111.Scaffold626     62390 67 -  1189296 I

a score=-2360.000000
s ce10.chrX              5448514 57 + 17718866 ATTTTTGTTTTTGGTAAAGTATTTCGAAGCTGAAAACT---ATTTATT------CCCAAATATCAC
s cb4.chrX              10798439 55 + 21540570 AAgt--------gataaagaaaaaaaaatctaaaagtt---gATTGTTTTAAAGCTTAATTATTGA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   585238 53 +   823664 -------ttttttgttttgtttttcttttctgtgtatttacatttatt------cccaaacttcaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeSp111.Scaffold626     62390 67 -  1189296 I
e caeRem4.Crem_Contig0   2209844 19 -  4500979 I

a score=-1001.000000
s ce10.chrX              5448571 228 + 17718866 AGTAAAACTTTTCCAGTTTTTTTTTTTGAAATTGTTTTATGTTTATCCAGAAAATTGTGAAACTCATTGTGAAGCTC--TTATCTATCATAATTTTGGAAATCGTCCAAAAATGTATTTTTTCTTCGAGTGTTATATTGCGTTCCAATTAATTGTATT----CAAATGATTTATGCGCTCGAGATAATTTTTTAAAACTGGCGATATTGGAACAAAAACCTATGTTTTTTTTTG
s cb4.chrX              10798494 164 + 21540570 AGTA---------CCGTTTTTCCTCT---AATCCATCTA-GCTCACCCT---AACTGTCAACtctg------ggctcaattatct-tgatacctgtgaaaaatgtc-aaaattgtAT--------CAACTGAAgaattg--------ttcatcatattatcacctatattttatcagtt---gagaattttttga---------------------------tgtcttttgtgg
i cb4.chrX              C 0 I 115
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291   0 +   823664 C
e caeSp111.Scaffold626     62390  67 -  1189296 I
e caeRem4.Crem_Contig0   2209844  19 -  4500979 I

a score=0.000000
s ce10.chrX              5448799 141 + 17718866 AACAAAAACATTTAAAATCATTTTTTCGCAAGGTTTCTGATAGCACAATTGCCACCGCTTTTTTTATTTGATTAAGGCGTAATACTGAAATCTGAGCTTTAAAAAAATCTGAGCCCAAATTGTTCAAAACAATCAAAAAGG
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291   0 +   823664 C
e cb4.chrX              10798658 115 + 21540570 I
e caeSp111.Scaffold626     62390  67 -  1189296 I
e caeRem4.Crem_Contig0   2209844  19 -  4500979 I

a score=901.000000
s ce10.chrX              5448940 37 + 17718866 CGAAGTCTAAAAATGTTTCAAAAAAAAATTATGACGG
s cb4.chrX              10798773 35 + 21540570 caagttttgaaaat--ttcaaaaaacacataaggggg
i cb4.chrX              I 115 I 174
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291  0 +   823664 C
e caeSp111.Scaffold626     62390 67 -  1189296 I
e caeRem4.Crem_Contig0   2209844 19 -  4500979 I

a score=0.000000
s ce10.chrX              5448977 264 + 17718866 CTCAAAAATTTGGAAAATACCTCTTTCTGCTAAAATCTCAAAGTTTGCCAACTTGTGACAGCCGACGGAACCTTGTATTTTAGCGTTTATTAGCTAATTCACGTATCGTATCGATACATGGTTGCACTAAATTGCATCATATTCGTGCATCCATTGACTGAAAAACTTTTAAATCAACGAAACGACTTGTAATACATAAATTACCAGAATCTGCATTAAAAGGCGATACACTTATTTGCGCAAGATCTAACATTGTCAAAATGG
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291   0 +   823664 C
e cb4.chrX              10798808 174 + 21540570 I
e caeSp111.Scaffold626     62390  67 -  1189296 I
e caeRem4.Crem_Contig0   2209844  19 -  4500979 I

a score=266.000000
s ce10.chrX              5449241 147 + 17718866 CAGCATTTTTCAGTTTTGCTGAAAATACACTGTTTTTCAGAAATTTTCTG--AACGGCTCAATACTGAATTCGATAGTGTTGAGATATTTTTGGTGTACAACAATCTAAAATTTTAGTACTTCTCTTATAAAAACTGTTAGGTGACTTA
s cb4.chrX              10798982 111 + 21540570 cgggatTTTACAAATATG--GGAAATACAacattttgtttgaatttcaggCAAACAGCT---TGCTGAATCCCATATCTTTCAAATATTCT--------------CAAGAAATTCTGAAC-------------------AGATTGAGTA
i cb4.chrX              I 174 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291   0 +   823664 C
e caeSp111.Scaffold626     62390  67 -  1189296 I
e caeRem4.Crem_Contig0   2209844  19 -  4500979 I

a score=129.000000
s ce10.chrX              5449388 15 + 17718866 Gaatttttgtttaat
s cb4.chrX              10799093 10 + 21540570 GAATCAAT-----tt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209863 10 -  4500979 gaattttt-----at
i caeRem4.Crem_Contig0  I 19 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeJap4.Scaffold18194   585291  0 +   823664 C
e caeSp111.Scaffold626     62390 67 -  1189296 I

a score=-1068.000000
s ce10.chrX              5449403 16 + 17718866 ttttttatttttaaCC
s cb4.chrX              10799103  9 + 21540570 atctccttt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209873 16 -  4500979 tttaccaTTCCTAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   585291 13 +   823664 tttgttatttttg---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I
e caeSp111.Scaffold626     62390 67 -  1189296 I

a score=-3277.000000
s ce10.chrX              5449419 9 + 17718866 TAAGAC---ATG
s cb4.chrX              10799112 1 + 21540570 -----t------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2209889 6 -  4500979 TAAAAT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     62457 9 -  1189296 taaaatcaa---
i caeSp111.Scaffold626  I 67 C 0
s caeJap4.Scaffold18194   585304 1 +   823664 -----t------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3733242 462 +  4147112 I

a score=749431.000000
s ce10.chrX              5449428 1104 + 17718866  
s cb4.chrX              10799113 1096 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2209895 1102 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     62466 1065 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3733704 1117 +  4147112  
i caePb3.Scfld02_0      I 462 I 33
s caeJap4.Scaffold18194   585305 1308 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-12771.000000
s ce10.chrX              5450532 37 + 17718866 ATGTTCAATAAAATATAAA---ATTGAAACTT----------TTTTTTGT-
s cb4.chrX              10800210 28 + 21540570 -ttttttttgattaaggaa---aactgaaata-------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2210998 28 -  4500979 -attttaaaaactggaaac---aatGATAACT-------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     63531 33 -  1189296 ---------AACAAAGAACGCTACTGAGAATTTGAATGTAGT---------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   586613 19 +   823664 -----------ttaaaaat---atttatcttG------------------T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3734821 33 +  4147112 I

a score=190335.000000
s ce10.chrX              5450569 524 + 17718866  
s cb4.chrX              10800238 507 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2211026 427 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     63564 470 -  1189296  
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3734854 566 +  4147112  
i caePb3.Scfld02_0      I 33 I 131
s caeJap4.Scaffold18194   586632 477 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-21343.000000
s ce10.chrX              5451093  54 + 17718866 A-----TTTTGGTTAA------------------------------CATTCTTCACTTTATGCATTAACTCGC----------------------------AAGTGAATTGTGACGT
s cb4.chrX              10800748 115 + 21540570 AAAGTTGTTCGGTCAATATGTGAAATAATGTAGTTGGAGTTCTGAATACTTTTTGTTTACCGTA-TGACCAGT-AACAAATGAACTCTCTAAATATTGATCAAATGTATTCTGATTT
i cb4.chrX              I 3 I 3
s caeRem4.Crem_Contig0   2211453  21 -  4500979 --------tttgtcaa-------------------------------------------------------------------------------------aaatggaTTGTGA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64039  26 -  1189296 ------TACTTTTCAG-------------------------------------------------------------------------------------AAACCTGGAGCGATAT
i caeSp111.Scaffold626  I 5 I 8
s caeJap4.Scaffold18194   587109  43 +   823664 ------------------------------------------------GTTTCTGTGATATATAATAATTAgtcaataaa---------------------aaatacaatgt-----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3735420 131 +  4147112 I

a score=-21262.000000
s ce10.chrX              5451147 44 + 17718866 TGTATGAAATTTTGAAAAAAGTCAAGCCACCTAGG--GGA-------CTCGAA
s cb4.chrX              10800866 32 + 21540570 -----------TCAA--------TGATATCTTTAA--CGAAAAATAGCTTAAT
i cb4.chrX              I 3 I 57
s caeRem4.Crem_Contig0   2211474 29 -  4500979 ------------------------AGTATTATTGGGTCGAGAAAGCATTTGAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     64073 24 -  1189296 ---------TTTC----------TGACGTATTGGA--CAA--------TCAAA
i caeSp111.Scaffold626  I 8 I 1
s caePb3.Scfld02_0       3735551 38 +  4147112 Tgttttaaatttcag------tttgactTCTCCAG--CGA-------CTCAAT
i caePb3.Scfld02_0      I 131 I 1
s caeJap4.Scaffold18194   587152  4 +   823664 TGTA-------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-15662.000000
s ce10.chrX              5451191 51 + 17718866 ---CCCCTGACCTTAAGATTAAAAGTCTCACGCTCTACCAACTGAGCTAAGGAG
s caeRem4.Crem_Contig0   2211504 18 -  4500979 ---GCTATAATT---ATAACAATA------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     64098 28 -  1189296 ---GT----ATT-CGTTGCCGAAATTCT-ACATTTAG-----------------
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3735590 46 +  4147112 ---attctgatt-caaaaactatagtct-actttttattaatttttccaaa---
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   587156 21 +   823664 GCTCCTACAACC-----ATTAAAAAG----------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10800898 57 + 21540570 I

a score=-37262.000000
s ce10.chrX              5451242 84 + 17718866 GCCCTGTAGCGCCACTTTCAAAGAACAA--ACATTTTTTGTACGTTTCC---------GATTGCCTTACCAGTTTGAAC----AATAAAATTCGCATTG
s cb4.chrX              10800955 76 + 21540570 -GCACAGTATTTCGCTTTCACAAGACAG----------TATCTAAT------------TTTTACAGAACACCTCAAACAATCTAATAAAAGCCGCCTTA
i cb4.chrX              I 57 I 47
s caeRem4.Crem_Contig0   2211522 41 -  4500979 ----CATTactctg------aaaaacag-----------------------------------aaatacaAGTTAGACA----AATAAAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64126 49 -  1189296 ----TACAATTAGTTTTT--AGTACTAG------------------------------CTCCGAAACTCTTGTTTGATCG---AATTA-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3735636 79 +  4147112 --tttatagttaagttttccagaaacagaaaca-tttttatagagtccctttcatcttcttcgagatatttatctga------aacta-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   587177 41 +   823664 -------------------GCAAAACAA----------CAAATAA-------------AGTAGTAGAACAAGAAGAAGC----AATG------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-13081.000000
s ce10.chrX              5451326 49 + 17718866 TATTACTCAATTTGGTATTCTGTGTAACACACGACACGGTTTT-----------GGAATC
s caeRem4.Crem_Contig0   2211563 21 -  4500979 ---------------------------------AGTGTGTCCTGTCTGAAATAC------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64175 19 -  1189296 ------------------------CTTCATTCGagtttgtttt-----------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3735715 43 +  4147112 tgcttttcattttcatgcaCTTGTCATAATTCCATACCGTTCT-----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   587218 18 +   823664 ------------------------CTATATGAATTTATGTGT------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10801031 47 + 21540570 I

a score=-29549.000000
s ce10.chrX              5451375 70 + 17718866 AAAATGTGTTGAGTGTTAAAAATTTGAAATGAAATTAACTTGGATATAACCCTTATTTTGAGA---------------------------TGATTTT----
s cb4.chrX              10801078 66 + 21540570 -------------------------aaaatg-tgtcaactg--attaaatgt---tggtgatattaggAAAAACagctttatcagttgaccgatttt----
i cb4.chrX              I 47 I 148
s caeRem4.Crem_Contig0   2211584 26 -  4500979 -----------------------------CG-TAT---------TCTAATTT---TGTTTAGA-----------------------------ATTTG----
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626     64194 33 -  1189296 ------------gatttggaaatctgaa--------------------aaat---atctgaaa-----------------------------atttt----
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3735758 56 +  4147112 --------catagattttcgaatttgaaatg-tttgaatttgcATTTTACAT---TTCTGAGA-----------------------------ACATC----
i caePb3.Scfld02_0      C 0 I 94
s caeJap4.Scaffold18194   587236 31 +   823664 -----------------------------------------GTGCTTTATTT---ATCAAAAA--------------------------CCGATTCTCGAA
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5451445 11 + 17718866 GTGCTAATAAA
e caePb3.Scfld02_0       3735814 94 +  4147112 I
e caeJap4.Scaffold18194   587267  0 +   823664 C
e cb4.chrX              10801144 148 + 21540570 I
e caeSp111.Scaffold626     64227 12 -  1189296 I
e caeRem4.Crem_Contig0   2211610 12 -  4500979 I

a score=-10395.000000
s ce10.chrX              5451456 65 + 17718866 TGTAAAAAAATAATATAGTTTC--AATTAAAATAGTAAACTTTAGT----TAACAAGGGTAAAACTAAATT
s caeRem4.Crem_Contig0   2211622 53 -  4500979 TGTA---CACTGACCCAACTTCCGAATTCAAGT-----ATTTTAAT----TCGTA-----GCGACTAAAT-
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626     64239 28 -  1189296 TCTA-----------CAATTTTTGTCTTCAAAT---------------------------GCAATT-----
i caeSp111.Scaffold626  I 12 C 0
s caeJap4.Scaffold18194   587267 39 +   823664 -------------------TTC--CATTGAACTAGGGGACCTGACTACCCTAACC-----ACATT------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3735814 94 +  4147112 I
e cb4.chrX              10801144 148 + 21540570 I

a score=-8575.000000
s ce10.chrX              5451521 34 + 17718866 AAGCTTTCCGAGTTCA------ATTATTGGCCAA---------CTTTCA--------
s cb4.chrX              10801292 42 + 21540570 aaaactcccGAATGCTCGAAATATTATTGGTATAAC-------ATTCCA--------
i cb4.chrX              I 148 I 6
s caeRem4.Crem_Contig0   2211675 27 -  4500979 ----------------------ATTATTGGCATAACCCATCCGATTTCC--------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     64267 17 -  1189296 ----------------------------GGTCTAACCCA----GTTCTT--------
i caeSp111.Scaffold626  C 0 I 3
s caeJap4.Scaffold18194   587306 23 +   823664 -------------------------AAGGGCGCA---------TTTCCTAAACCCCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3735814 94 +  4147112 I

a score=313411.000000
s ce10.chrX              5451555 428 + 17718866  
s cb4.chrX              10801340 509 + 21540570  
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2211705 409 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     64287 425 -  1189296  
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3735908 436 +  4147112  
i caePb3.Scfld02_0      I 94 C 0
s caeJap4.Scaffold18194   587329 400 +   823664  
i caeJap4.Scaffold18194 C 0 I 1206

a score=10389.000000
s ce10.chrX              5451983 13 + 17718866 CCAGGCGGTTATT
s cb4.chrX              10801849 13 + 21540570 CCGGGCGGCTCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2212114 13 -  4500979 CCGGGCGGCTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64712 13 -  1189296 CCGGGCGGCTATT
i caeSp111.Scaffold626  C 0 I 192
s caePb3.Scfld02_0       3736344 13 +  4147112 CCGGGCGGCTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   587729 1206 +   823664 I

a score=546.000000
s ce10.chrX              5451996 1 + 17718866 T
s cb4.chrX              10801862 1 + 21540570 T
i cb4.chrX              C 0 I 173
s caeRem4.Crem_Contig0   2212127 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 181
s caePb3.Scfld02_0       3736357 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 218
e caeJap4.Scaffold18194   587729 1206 +   823664 I
e caeSp111.Scaffold626     64725 192 -  1189296 I

a score=0.000000
s ce10.chrX              5451997 811 + 17718866  
e caePb3.Scfld02_0       3736358 218 +  4147112 I
e caeJap4.Scaffold18194   587729 1206 +   823664 I
e cb4.chrX              10801863 173 + 21540570 I
e caeSp111.Scaffold626     64725 192 -  1189296 I
e caeRem4.Crem_Contig0   2212128 181 -  4500979 I

a score=57.000000
s ce10.chrX              5452808 3 + 17718866 TTC
s caeRem4.Crem_Contig0   2212309 3 -  4500979 TTG
i caeRem4.Crem_Contig0  I 181 C 0
e caePb3.Scfld02_0       3736358 218 +  4147112 I
e caeJap4.Scaffold18194   587729 1206 +   823664 I
e cb4.chrX              10801863 173 + 21540570 I
e caeSp111.Scaffold626     64725 192 -  1189296 I

a score=241.000000
s ce10.chrX              5452811 4 + 17718866 ATCT
s cb4.chrX              10802036 4 + 21540570 ATCA
i cb4.chrX              I 173 C 0
s caeRem4.Crem_Contig0   2212312 4 -  4500979 ATGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3736358 218 +  4147112 I
e caeJap4.Scaffold18194   587729 1206 +   823664 I
e caeSp111.Scaffold626     64725 192 -  1189296 I

a score=2443.000000
s ce10.chrX              5452815 7 + 17718866 GAAACCG
s cb4.chrX              10802040 7 + 21540570 GAAACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2212316 7 -  4500979 GAAACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64917 7 -  1189296 gaaaata
i caeSp111.Scaffold626  I 192 C 0
e caePb3.Scfld02_0       3736358 218 +  4147112 I
e caeJap4.Scaffold18194   587729 1206 +   823664 I

a score=44957.000000
s ce10.chrX              5452822 91 + 17718866 AAAGCAATAAGTAATGCAAACA-TTGGAACAATTTCTCATTTTCCG----CTTTTTT----GATAGGT----TCCCTTTTGCCTTTTTCCATCTCG--GGCATTT-A
s cb4.chrX              10802047 93 + 21540570 ACAGCAATAAAGAATGCAAACATTCggaacaatttttcattttcta----tcttttttcacgcttttc----cc------gctttttttcatcttggtcacatttca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2212323 89 -  4500979 AAAGCAATAAAGAATGCAAACA-TCGGaacaatttcttattttccg----cCCTTTTTCTTGAtaggt----tc-------ttttttttcatctcg--CACATTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     64924 93 -  1189296 gaagCAATAAGGAATGCAAACA-TCGGaacaatttctcattttccg----aCATTTTTACTGATAGGTTTcacc-------ctttttttcatctcg--cACATTTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3736576 96 +  4147112 aaagcaataAGGAATGCAAACA-TCGgaacaatttctcattttccgcGTCCTTCTTTAACTGATaggtttt-cc-------ctttttttcatttcg--caCATTTCA
i caePb3.Scfld02_0      I 218 C 0
e caeJap4.Scaffold18194   587729 1206 +   823664 I

a score=73917.000000
s ce10.chrX              5452913 435 + 17718866  
s cb4.chrX              10802140 495 + 21540570  
i cb4.chrX              C 0 I 1406
s caeRem4.Crem_Contig0   2212412 449 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     65017 407 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3736672 410 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   588935 441 +   823664  
i caeJap4.Scaffold18194 I 1206 C 0

a score=1000.000000
s ce10.chrX              5453348 1 + 17718866 C
s caeRem4.Crem_Contig0   2212862 1 -  4500979 C
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     65424 1 -  1189296 C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3737082 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   589376 1 +   823664 c
i caeJap4.Scaffold18194 C 0 I 160
e cb4.chrX              10802635 1406 + 21540570 I

a score=3395.000000
s ce10.chrX              5453349 26 + 17718866 ATAATGTTTGATCAATAAATTTGAA-T
s caeRem4.Crem_Contig0   2212863 26 -  4500979 ATTATCTCTGATCAGAAATCTTCAGT-
i caeRem4.Crem_Contig0  C 0 I 268
s caeSp111.Scaffold626     65425 25 -  1189296 ATTATATCTGATCAAATATCTTCGG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3737083 25 +  4147112 AAtatttctgatcaaaaatctgtga--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I

a score=-862.000000
s ce10.chrX              5453375 26 + 17718866 AACAGATATCAGTAGC-AGATAAAATA
s caeSp111.Scaffold626     65450 24 -  1189296 AG--AATTTATATAGA-AGATCAAGTA
i caeSp111.Scaffold626  C 0 I 174
s caePb3.Scfld02_0       3737108 26 +  4147112 aat-tGTTTATGAAGGTATATGAATTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I
e caeRem4.Crem_Contig0   2212889 268 -  4500979 I

a score=217.000000
s ce10.chrX              5453401 6 + 17718866 GGCTTA
s caePb3.Scfld02_0       3737134 6 +  4147112 CGTTTA
i caePb3.Scfld02_0      C 0 I 90
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I
e caeSp111.Scaffold626     65474 174 -  1189296 I
e caeRem4.Crem_Contig0   2212889 268 -  4500979 I

a score=0.000000
s ce10.chrX              5453407 104 + 17718866 TCGAAGCTGATATGCATAAAATTAAAGACTAAGGTGAGAGCTTTCGTTTATTATGCTTGATGGtgaagtagcaccagtgggaaaattgttaaaaaccactaata
e caePb3.Scfld02_0       3737140  90 +  4147112 I
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I
e caeSp111.Scaffold626     65474 174 -  1189296 I
e caeRem4.Crem_Contig0   2212889 268 -  4500979 I

a score=-3500.000000
s ce10.chrX              5453511 720 + 17718866  
s caePb3.Scfld02_0       3737230 591 +  4147112  
i caePb3.Scfld02_0      I 90 C 0
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I
e caeSp111.Scaffold626     65474 174 -  1189296 I
e caeRem4.Crem_Contig0   2212889 268 -  4500979 I

a score=-1001.000000
s ce10.chrX              5454231 29 + 17718866 TAAACAGATTTTCATT-ATTCTAATAATTT-----
s caeSp111.Scaffold626     65648 30 -  1189296 Tacacagatttt-----tttctcatattgTGAAAG
i caeSp111.Scaffold626  I 174 C 0
s caePb3.Scfld02_0       3737821 34 +  4147112 TAGCGAAATCCCTATAATTTCTATTATCCT-CAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I
e caeRem4.Crem_Contig0   2212889 268 -  4500979 I

a score=8695.000000
s ce10.chrX              5454260 43 + 17718866 GAGATCAACGTGATACAAG---TAA-----GTCTCCAACCTTTCCAAATG--------T
s caeRem4.Crem_Contig0   2213157 44 -  4500979 GGGATCAGTATTATACAAG---TAGT----ATCTTCAACCTTTACAATTG--------T
i caeRem4.Crem_Contig0  I 268 C 0
s caeSp111.Scaffold626     65678 56 -  1189296 GAGATCAGTATTATACTAT---TAGTCCGTATTTTCAATCTTTACAATTTTTACTACCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3737855 49 +  4147112 AAGATCAATGTTATAATACAAGTAGTTC--ATCTCCAACCTTTTCAATTG--------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   589377 160 +   823664 I
e cb4.chrX              10802635 1406 + 21540570 I

a score=-888.000000
s ce10.chrX              5454303 12 + 17718866 ------ATCTCA-AAACGT
s caeRem4.Crem_Contig0   2213201 13 -  4500979 ------ATCTCACACTTTT
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626     65734 13 -  1189296 ------ACCTCTCTCTCGT
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3737904 13 +  4147112 ------ACCTCTCACATGT
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   589537 12 +   823664 ATGTCAATCTTT-------
i caeJap4.Scaffold18194 I 160 C 0
e cb4.chrX              10802635 1406 + 21540570 I

a score=212678.000000
s ce10.chrX              5454315 406 + 17718866 GG--CTAAATCTAAAATTTAATCCCTTTTTCACTCTCACTCA-AATACAC-------------------TCAAAAC--------CTCA---CACACGG-----CAATTCGATGAAACATGTACTAAACCGTATTATACAAAT--------------GACGCCCG-----GCTTGTCGAAAA--ATGTGCCCTCTC---TCCCCTTCTTTTTATATAGATGTATATATCAAAAAGCTTTTTCCTCGCTCA-TTGTTGGAATGAA-TTGTTG-----GAGAGAATATAAAAATTTTATTGACTTAACACCGTCT-CCATTGTCAACTGTTTTTATTTGTTTAATTCAAACATTTCGCG-----CTTGCGAGGGCT------CCGA--GATGCTCCTCATATCGACA--ACATTAGGC--GCTTATTAATTTGGATT-AATA--CTTCAT--CACTCCTCAC--TTTTTTTTTGCTTTGCTTC-T---------CACTTCCGTTTCCTGTTGC
s cb4.chrX              10804041 424 + 21540570 GA--CTACATC-AAAATTTAATCCT-CTTTATTTTGTCTCCA-TTATGTCCGCCACCCGGCCATCCACACCAAAAC--------TAAT------GCCG-----AAATTCGATGAAACATGGACTAAACCGTATTATACAAATGACGAACAGCGGAGGACTGCCTAAAAACCTTGTTTCGA-----------TATT-----------------------CCTAT-------AAAGCTTCT---CCTCTTA-TTGTTGAAGTGAATTgtttgagagagaaagaatataaaaattttattgactTAACACCGTCTCCTATTGTCAACTGTTTTTATTTGTTTAATTCAC--ACATTTCGGCGGCCCGG-GAGGGCCTAATTCTCAAATGCTGCTCTTCTTACCGACA--ACATTAGGAAGGCGTATTAATTTGGATTAAATA--CTTCATTTCCTGCCTCGCGGGTTTTTCTCGCTTCTCAAG-A---------TGCTTCCGTTTCCTGTTGC
i cb4.chrX              I 1406 C 0
s caeRem4.Crem_Contig0   2213218 380 -  4500979 GG--ctaaatc-aaaatttaatcCC-TTTTCTCTCTGCGCCA-TCTTTTT-------------------CCAAAAC--------CACTTTCCCAACCG-----CAATTCGATGAAACATGTACTAAACCGTATTATACAAA---------------GACACCCC-----TCTTGTTCCAA----CGTGCCCTCTT-----------------------CCTATATATCAAAAAGCTTTT---TCTCTTA-TTGTTGGAGTGAAAATGTTG-----GAgagaatataaaaattttattgactTAACACCGTCT-CTATTGTCAactgtttttatttgtttaatTCAC--ATTTCGCG-----CCCG-GAGGGCCT-----TCGA----TGCTCTTCATACCGACA--ACATTAGGC--GCTTATTAATTTGGATT-AATA--CTTCATTCCCttcctt----ctcatttttgctTCTCAAG-A------A-GCGCTTCCGTTTCCTGTTGC
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626     65749 399 -  1189296 GAGGCtaaatc-aaaatttaatccc-ctttctctctca-----tctcttt-------------------tcaaaac--------cgCTGCTGCCACTG-----CAATTCAGTGAAACATGTACTAAACCGTATTATACAAAT--------------GATGCCCC---GGGCTTGTCCAAA----TGTGCCCCCTTGCGTCGCGTTGTTT---------CCTATATATCAAAAAGCTTTT---TCACTCA-TTGTTGGAGTGAA-TTGCTG-----GagagaatataaaaattttattgacTTAACACCGTCT-CCATTGTCaactgtttttatttgtttaaTTCACAAATTTCGCG-----CCGG-TAGAGCT------CCGA----TGCTCTTCATACCGACA--ACATTAGAA--GCTTATTAATTTGGATT-AATA--CTTCATttccttccttct--cttttttctgctttccTTG-A----GCA-GCGCTTCCGTTTCCTATTGC
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3737919 399 +  4147112 GA--ctaaatc-aaaatttaatccc-ttttctctttccgccatttttctt-------------------ccaaaac--------cgCTACTGCCACCGCA--TCAATTCGTTGAAACATGTACTAAACCGTATTATACAAAT--------------GACGCCCC---GGGCTTGTCCAAA----TGTGCCCTCCT------CGTCTCTT---------CCTATATATTAAAAAGCTTTT---TCACTCA-TTGTTGGAGTGAA-TTGCTG-----GagagaatataaaaattttattgacttAACACCGTCT-CTATTGTCaactgtttttatttgtttaatTCAC--ATTTCTCG-----CCGG-TAGAGCT------CCGA----TGCTCTTCGTATCGACA--ACATTAGAA--GCTTATTAATTTGGATT-AATactcttcatttcctt-cttct--cttttttttgctcctcaAGAA----GCA-TTGCTTCCGTTTCCTGTTGC
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   589549 399 +   823664 GG--CTAAATC-ACAATTTAATCCT-CTCTTCCTTC-------TATTGCC-------------------TCAAAACTAGGCACTCACTCCCTCACCAGCAATTCAATTCGTTGAAACATGTACTAAACCGTATTATACAAAT--------------GCCGAGGT-TGGGGTTTGTGCCGTGTCGCGGTCCGTCTT---TCTCATTTTCCAATCA----TGTTTATATCA-AAAGCTTTT---TCATACACCTATTGCATTGCA-TTGTTG-----GAGCgaatataaaaattttattgactTAACACCAT---CCTTTGTCAactgtttttgtttgtttaatTCACACAATTTGCG-----GCTC--------------ATTG----CGCTCTTCCT-CAGACAACACATTTGGC--GCTTATTAATTTCAATT-AATT--CCTC----------------TTTATCTcttcttccgaaa-aaattgcattttcttCCGTTTCCTGTTGC
i caeJap4.Scaffold18194 C 0 I 782

a score=84597.000000
s ce10.chrX              5454721 204 + 17718866 CAACGCATTTACTGACCTCACGGTGAG---TGCT-----------------TGGAAA---AGAGAAAAGATATGATC------GCG-----CGAGCAACTAGACAAATACATCTTGACAGTTTT----TA-TTTTTTGTACGTAATATACTCTTGAGATGTATGT------TCAACATAAAAGTGCAAAGTTGATCTTAC----------------------T---CCTGA------TGCTGAGCCAGAGCATCA--------GAATAAGAAA-----GAAAATGTCAGGAAG
s cb4.chrX              10804465 260 + 21540570 CAT-----CTACTGACCTC-CTGTGTG---CATTGAGAACAtacaattttatgaaaa---aagaaacatataTGATC--TGCAGCATCTC-CTACTATTTGGACAAATAGAACTTGACAGTTTTTGCGTG-TTTTTTGTAGAT--TATACACTAGAAATGTCTGTTGTATCTCAACA-CTAATCGCGTAACTGATCTCATTGCTTCCTCCTCAAT-------T---CCCGGTTTTCTTGTCGAGCTTAAGCATCTGTGGGAGTGATGAATGAAC----AAGAATGTCGCAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2213598 248 -  4500979 CATTGCAGTCACTGACCTCACTGTTAG---TGct-----------------tgaaaattgaggaaacaGATATGATC---GCTGCATCGA-GAACCCACTAGACAAATACATCttgacagtttt----tg-ttttttgtacgT--TATACACTCGAAATGTATGT------TCAACATCTAATCGTGAAACTGATCTCATTGGCTTCTTCCCATTC--Ttcct---tctcgttttcttgtCGAGCCGAGGCATCT---GAAGTGatgaatgaacaaaaaaaaatgtcgcgAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     66148 259 -  1189296 CAATGCATTGACTGACCTCACTGTGAGCGCTGCT-----------------TGTAAG-AGTAGAGGAAGATAGGATCATTGTAGGATCTCGATCCTCACTAGACAAATACATCTTgacagtttt----tg-ttttttgtacGT--TATACACTCGAAATGTATGT------TCAACATCTAATCGCAAAACTGATCTCATTACTTCTTTCCCACTCATTTCATCTCCCCAGTCTTCTTGTCGAGCCGAGGCATCT---GACGAGAAGACGGAATGAACAAGAATGTCGCGAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3738318 242 +  4147112 CATTGCATTCACTGACCTCACTGTGAG---TAct-----------------tggaaa-tgaagagaaagataTGATC------GCATCCCACCATCCGCTAGACAAATACATCttgacagtttt----tgtttttttgtacgt--TATACACTCGAAATGTATGT------TCAACATCTAATCGCGACAATGATCTCATTGCTTTTTCC---CTCATTGTGT---CCCGGTTTTCTTGTCGAGCCGAAGCATCT---GACGTGATGAATGAACG---AAGAATGTCGCGAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   589948 782 +   823664 I

a score=191556.000000
s ce10.chrX              5454925 498 + 17718866  
s cb4.chrX              10804725 644 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2213846 528 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     66407 524 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3738560 523 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   590730 519 +   823664  
i caeJap4.Scaffold18194 I 782 I 287

a score=-1111.000000
s ce10.chrX              5455423 8 + 17718866 ATGTCGTT-
s cb4.chrX              10805369 8 + 21540570 ACCTCGTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2214374 8 -  4500979 TCGTCGTT-
i caeRem4.Crem_Contig0  C 0 I 187
s caeSp111.Scaffold626     66931 9 -  1189296 ACCTCCTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3739083 8 +  4147112 ACC-CTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   591249 287 +   823664 I

a score=-2951.000000
s ce10.chrX              5455431  91 + 17718866 --CAAATACTTATTGG------CGTTTTGTATCAGAAAG--TAGTATGA--GTTTTTTT--TTATT---TTTTTCAGTCGAGATTTTCTTTTTTTATAAATTTGAACA
s cb4.chrX              10805377  78 + 21540570 TCGCGACGTCCGGTGACTCGgtcgttttttcttgaaatgaCCACTatga--agctcttt--ttttt-------------------tatttttcgattagGA-------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     66940  86 -  1189296 -CACGACGTCCggcaa------ttttt-----tagaatgacCACTATAT--ggattcta--tttttgaatttcggaat----aTGTATTCTTGGAAAAATAGAGTA--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3739091 101 +  4147112 -CACGACGTCCGGCGa------cgttttttgatgagatgaCCACTATATACggcttctcatttttcaaatatcgaAACCAAGATGTTCTCTTTGAaaaggaatgaaga
i caePb3.Scfld02_0      C 0 I 94
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=-894.000000
s ce10.chrX              5455522 52 + 17718866 -CTTAACCTGAAAACCATTAT----------GTACGCGAACACATTTCTAAATGTCTCttaaa
s cb4.chrX              10805455 35 + 21540570 ---------GGAAACGACTAT------------------ACATA-TCCTAAACATGAACTGAG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     67026 61 -  1189296 TTTTTCACTGAAGACTACCATTTTGGTCtcgattcg-gaaaaaa-ttataaatatttatcaaa
i caeSp111.Scaffold626  C 0 I 36
e caePb3.Scfld02_0       3739192 94 +  4147112 I
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=450.000000
s ce10.chrX              5455574 48 + 17718866 agtatagtttgtggagatttagttaaaacacatttaaaatagtccaaa
s cb4.chrX              10805490 37 + 21540570 AATGTTGTatttagatatttt-----------tttaaagtgatcgtaa
i cb4.chrX              C 0 I 67
e caePb3.Scfld02_0       3739192 94 +  4147112 I
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeSp111.Scaffold626     67087 36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=0.000000
s ce10.chrX              5455622 33 + 17718866 tttaccaaatatcacaatgaaacactccaacat
e caePb3.Scfld02_0       3739192 94 +  4147112 I
e caeJap4.Scaffold18194   591249 287 +   823664 I
e cb4.chrX              10805527 67 + 21540570 I
e caeSp111.Scaffold626     67087 36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=234.000000
s ce10.chrX              5455655 61 + 17718866 ttgcagatatttcagagttt-----ttagttgaaattttagttaaacgccaaaattttCGAGAATG
s caePb3.Scfld02_0       3739286 63 +  4147112 TTCCAGAGCTCCCAGAGCTTCTCCCTTTTCTGTAACTTT---TTGATCTTATCAGCTTCGAAACTC
i caePb3.Scfld02_0      I 94 C 0
e caeJap4.Scaffold18194   591249 287 +   823664 I
e cb4.chrX              10805527 67 + 21540570 I
e caeSp111.Scaffold626     67087 36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=347.000000
s ce10.chrX              5455716 18 + 17718866 --TAGGTTTTT---TGAAATTTT
s cb4.chrX              10805594 18 + 21540570 --tAGCTTACA---AGAAATCtg
i cb4.chrX              I 67 C 0
s caePb3.Scfld02_0       3739349 23 +  4147112 TATGGCTTATATCTTTAAGTTTT
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeSp111.Scaffold626     67087 36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=13.000000
s ce10.chrX              5455734 16 + 17718866 TTGAGAATAAAGGAAT
s cb4.chrX              10805612  9 + 21540570 ttgataata-------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3739372 34 +  4147112 I
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeSp111.Scaffold626     67087 36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=-19033.000000
s ce10.chrX              5455750 432 + 17718866 TTAAAATATAAAAATTCGTGGAAAAAAC------TGATATATCTC-TTTTCAATATAATACTATTTTTAAAAA-----CATGGTTTTCAACC---TTAAAACAACAACAAAAAAAGAGAAAAATTCGTTGAATTTTGAAAGTATTTATT-GCATTCTAAAAAAAATTTTCTTAATGTTTAATTTGTACGA------AATTTGTTTTCGTAAAATGTAACAATTCGCGC-----CAATTACTGAAAGATTACTGAAAGAGAATTTTGACATGTTGATGTGAATTTTGTTGAAAAAT-------GTTCATTTTTCGAGCTAACAATGCCATAAACCTTGCTTTAAAAAAGACATACAAAAAATACtaccaaaattgccgattgccaaaaatttcaaaaacgcaaatctttaaaattgtaatttgccgCG---CACCTCTGCTTTGACCCAGTCTGAATAGTTTGAAATGAC
s cb4.chrX              10805621 280 + 21540570 ----------------------------------tgatgaacgTT-TTGCTAGTTgg----------------------------------ctttttaaaaatcttacaCAACATTAAG-----TCGCAAAACTCT-----CAGATATCTaca-------------------agttttcagttt-tacaA----------TATTTGCGATAATGTTTGAAATCTAAATGCTCCCAAATAAC---------------AAGaacgtttcttttttgaactgaGCC------AATATT-------ACTcacttttataattt----------------ttttttgaaaaaaa------------atctgaatcagACTTGTTTTCGATACAATTACAAAACCATTATCCTGTGGCTCCTaatct-tttcgtttttttcctg---------------aataatAT--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3739406 324 +  4147112 TTGCAGTtcaaagtttctcaaaaaaaattcaattttatgtaTTTTATTTACAGTTTGAAACTCTCTTCCAAGAACACGTATGGCTGTAAACCTGTTCAAAAAGACTAGGTGAAACGAAA-----TC---AGACTCC-----CATTTATC-AC--------------------agtcttgaattt-ttcaaattactgtttttttttcattgctatTCATATCCTGGAT-----CAGCTAA--------------------------ATTTCCTGATC--AGCC------GAAATTTGTTTTCGCTCTGCTATCTAACTT--------------CCTATTTTGATGCAAA------------ACTCCTAACATCGCTAATTTctgctcgaaaaaaaaa---------tgtgact-atAATTT-CTGCG---TATCCCTG-------------------------------
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeSp111.Scaffold626     67087  36 -  1189296 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=-8446.000000
s ce10.chrX              5456182 70 + 17718866 CCCCTAAATCATAAAGATTTTCT-ATGATTCACT-------------------GTTACAATTTTTTGAATATTATCAAATCATTTTGTAA
s cb4.chrX              10805901 43 + 21540570 -----------------CCcatt-aacatttttcaaattttcaacaaagaTCAGTTAC-----TTT------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     67123 73 -  1189296 CCtcgaaatcataaaaatgaatt-ctcatGTTTC---Tgttcatgaaaaat--gtagC-----TTCTACTATAATT------TTTcgtat
i caeSp111.Scaffold626  I 36 C 0
s caePb3.Scfld02_0       3739730 60 +  4147112 ------AATAACATAGATTGATTAATCATCAATC------TCGTGAGGG----GTTAC-----TTCTAATCTA---------TCTCATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   591249 287 +   823664 I
e caeRem4.Crem_Contig0   2214382 187 -  4500979 I

a score=-10774.000000
s ce10.chrX              5456252 218 + 17718866 TCACTACAAATGTTCATCAGTC---AACAAT----CCAAACCTTTTTTTTTTGAGAAATCTTTTCAA--------TCTCGATAAAACTCACACTC-AAACATTTC-ACGCGACTTCTGATCTCAT---------TGTAACTATGATTAATTA--CTAAAATGTGAGAGAA-CCGACTTCATTTAGTATGCTCTTCAGTATTATTTCGA------------TTCATTTTTTTACGAATGCGGTCTCCC-------------------GTC--------ATATGAAA-------------A
s cb4.chrX              10805944 226 + 21540570 ------------ATCACGTGTGTTGACTGAT----TCAAACTTCACACAT-------------------------TGCTAATGAATCTTCCGGTGACTCTCTCCCCAAAATAATTTCCGACTTGT------GGACTCTGC-GTGATTAATTAGGTTCGATGTT--AAAAA-TTTCCCTCATTAACTATGCTCTTACGCATTCTCG---------------GTTCtttttttACGAATGC-TCCTCTCCCTCTTTTCTCGGTCCAATGACAAATAATTAgagggaa------aaaattga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2214569 259 -  4500979 ttactaaaaatttttatctttctAGACATATAAGATCAAACGCCACATTTGTGACTGATATTTATAATCGTTTCGTACTAATGAAACTACTAGTT-TTATATTTCTGAAtgacttttgaacttttc-ccaATGATTCTACTATGATTAATTA--CTTGAATGC--GAGAA-CCTTTCTCATTTAATATGCTCTTACgcattcttttc-------------attctttttt-----attt-tcccccagtttttttctctctctca-gccaaataaaaatatgaaa-------------a
i caeRem4.Crem_Contig0  I 187 C 0
s caeSp111.Scaffold626     67196 261 -  1189296 ---tccaaaaatatcagCT-CATTAACCAACAATCCCGTGAGTGTTACTT----TTAATCTCTCTCCCCATAT--GCCTAATGAGACAA--gatc-ttttctttt-actcGACTTTTAGACTCGGCTCTCATGATTATGCTATGATTAATTA--CTTGAATGC--AAGAACCCTTACTCATTTAATATGCTCTTACGCATTctagctttttttctttctcttcttttttttacgaATAC-CCCTCTG-------------------gccaaataaaaataaaaaagagagaaagagaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3739790 180 +  4147112 ---C---------------------ACTAATGAATTCGTagg-------------------ctct----------------------------tt-ttttctttt---tcgactT-----CTGGCCTCTATTAATTAAAGTATGATTAATTA--CTCGAA-----------CCTTTCTCATTTAGTATGCTCTTACGCATTctggttttttctctct---tttcattttttacgaatGC-CCCTCTc-------------------gataaataaaaatatgaaa---aaagagaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   591249 287 +   823664 I

a score=551299.000000
s ce10.chrX              5456470 1010 + 17718866  
s cb4.chrX              10806170 1062 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2214828  984 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     67457 1015 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3739970  967 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   591536 1121 +   823664  
i caeJap4.Scaffold18194 I 287 I 740

a score=6846.000000
s ce10.chrX              5457480 24 + 17718866 TCTGTCTGTCAAAT------TTTGACTGGC
s cb4.chrX              10807232 30 + 21540570 TTTGTCCATCAAAATCACTTTCTGACCAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2215812 24 -  4500979 TCTGTCCATCAAAG------TTTGACCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     68472 24 -  1189296 TGTGATTATTAATT------TCTGACAGGC
i caeSp111.Scaffold626  C 0 I 161
s caePb3.Scfld02_0       3740937 22 +  4147112 TCCGTCCATCAACT------TCTGACCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I

a score=-8719.000000
s ce10.chrX              5457504 57 + 17718866 CATTTGATATATCGATATAGTAATTGT-------AGTTC----TGTTTTGAAGATTTTTGTTGAGTAA
s cb4.chrX              10807262 59 + 21540570 TGTGTGATTGATAGTGACATAAAATTGGTCGTGGTGTTCAGAGTTTTTTG--------TGTTAAGAA-
i cb4.chrX              C 0 I 677
s caeRem4.Crem_Contig0   2215836 41 -  4500979 ---ATGATTTTTTGGGAATcaaa-----------tgttc----tcttttt--------ctctaaaag-
i caeRem4.Crem_Contig0  C 0 I 11
s caePb3.Scfld02_0       3740959 17 +  4147112 -----AATTGA-----------------------cgttc----tagatt-------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I
e caeSp111.Scaffold626     68496 161 -  1189296 I

a score=-1605.000000
s ce10.chrX              5457561 36 + 17718866 CCACTATTTTCTGATTTT------------TTTTCTAAAGTTCTCATC
s caeRem4.Crem_Contig0   2215888 48 -  4500979 acagttttttctgattatgaGACAtgagtcattttcagagtacTCGTC
i caeRem4.Crem_Contig0  I 11 I 271
s caePb3.Scfld02_0       3740976 16 +  4147112 -----tttttttg----tgaaa--------att---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I
e caeSp111.Scaffold626     68496 161 -  1189296 I

a score=-79.000000
s ce10.chrX              5457597 67 + 17718866 TCAAGAAATGCACTATCTTAGCTTTTAGACAAATATTAGTTTTTGATATTTTTAAACATGACAATGC
s caePb3.Scfld02_0       3740992 32 +  4147112 ----------------------tttaggacaa--------ttttgaga-----agaactgACAATAC
i caePb3.Scfld02_0      C 0 I 144
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I
e caeSp111.Scaffold626     68496 161 -  1189296 I
e caeRem4.Crem_Contig0   2215936 271 -  4500979 I

a score=0.000000
s ce10.chrX              5457664 188 + 17718866 AACTATTGCTTTTGTTCAACTATAAAACATTTGTAGCAGTTTATTGGTTTTCAAGATGTATAATTTATTACATGAATAATTACATATGTACTTGAAATATATTCCAACAAAATAATGATAATCATAAGTTTTGTTAAACTTTCAAATATTAACCTGAAAAAAAAAGTTCTGGCAACCGCCGAATTTTT
e caePb3.Scfld02_0       3741024 144 +  4147112 I
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I
e caeSp111.Scaffold626     68496 161 -  1189296 I
e caeRem4.Crem_Contig0   2215936 271 -  4500979 I

a score=-2996.000000
s ce10.chrX              5457852 501 + 17718866 AATTTTTTTTGCAAAGTTGCGGCAATGGCTAATTTTT--AGAATTCTGTAATTTCATAATTTGACAATTTGAACCATTGGCAAATCGGCAACTCGACTGTCATCAAATTTAAAGTTTTGAAAAAAAAACTTTGAAAATTAGCAAAAAACTAATTTCTACTGTAGTAAGAGTTTTGGTTAACTCGAAAATGGTCGGCGGACATTTGTTCTGCAATTCTGTAGTTTTACTGTTCAAAAAAATAAGAAATCGACAATTATGCCATTATCTAGTTCAAAAATCTTTAAAAAACATACAA-AATGTAGAA-------CAAAAATTGCCAAAccgcctgccgtgcctgcctcgcgccgcaagtctgtgcagtgcggcgcggaacccgaaaattgtcggAAACTCAAGTTTTTTTGGCAATCGATACTTTTTGTAGTTTTCCACAATTGTCGAATTATCGAAAATTCAGATTCAGAGCCCGCTTTTGCTTTATAACATTTCAACTTGTTGCTTCGCAA
s caePb3.Scfld02_0       3741168 310 +  4147112 aattttttttagaaaactgttGTTAT---TAGGTGTTGAacaatactgttttttt------------tttgcat----------------accTCTTTCTGACCATGTTGCGAGttctagaa-------tttgaaaatt--caacaattttatttttaatgt--------tttt---------------------------tccattttaccAATTTGCAAATgaacgttttcgaaaaattagaaa-----------------agcaagctcaaaaaaattttgcagccCTAGAATAATGAGGAGTATATCTCAAAGTTCGCAAAATCAC------------------------------TACACTCC------------------------AAGCTCAAATT------ACAAAC--------CTGCACTTTTCC----------AATTa--------------------ccagtttttat---------tttccattctctGCTTTCc--
i caePb3.Scfld02_0      I 144 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I
e caeSp111.Scaffold626     68496 161 -  1189296 I
e caeRem4.Crem_Contig0   2215936 271 -  4500979 I

a score=-4565.000000
s ce10.chrX              5458353  89 + 17718866 ATTTATAAAAAAAAATTGTTTTC------AAAAACTTGTTT----------GTTGAAATCAGTAAACATAATTTTT----CACTAAACCTATTGCTGCCATCTGGAAAA
s caeSp111.Scaffold626     68657 108 -  1189296 ATTTCTAAATAATGATTTTATTCTAagcaaaaattttgttttcgacttcattttgaaa-aaaaatgctgAGTTTTTACTTCATTAGGGAAAATGCTATCATAAAAGTCA
i caeSp111.Scaffold626  I 161 C 0
s caePb3.Scfld02_0       3741478  28 +  4147112 -tctttgaa------------------------------------------attgaaa----------------------tattagaaaaa----------------ca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I
e caeRem4.Crem_Contig0   2215936 271 -  4500979 I

a score=6935.000000
s ce10.chrX              5458442 212 + 17718866 CCTACACA----GCAAAAACTGAACAAATTTCG--------GCATAAC---------TGTCTTTCAAACTCCCACCTAAAATTCCTGGTACTTGCCACA-CATTGATAACACTGTC--------TATTTCTCTC-AAAAGTTCACCGTTTCACTTTGTGGTGAAATTTCTTTTTTTTTCTCGTTCAAAAAATTAATAACACAAATGGTGTAATAGTGTCATGCTTTTTCACATTTTTGGAGGT
s caeRem4.Crem_Contig0   2216207 205 -  4500979 CCCACACAAAACGCGGAAC--CAACTTATTTCA--------ACACAGTTACCCCCTATGCCctttcaatttccatttcaattttataatcCTATCGGCAACACTGATAACGCCACAccaaata-catttttctctaACTGTTCG-CCTctcacttt----tgatttttttttcaattacatgattgaaaaat---agcgaaagaTTTCATACAGCGGCcgcgtt-------------------
i caeRem4.Crem_Contig0  I 271 C 0
s caeSp111.Scaffold626     68765 180 -  1189296 CCCACTCA----GCAAAAG--GAACTAATTTCAACATACACACACAGCTACCCTC--Tgccctttc--ttt----------tttataatcCTCCCGTCACTACTGATAACACC-CAccaa----catttttctctgactGTTCG-CCCctcacttt----tga----tttttcaattacccaa---------------aaagaatttcatAC-----CAATGTTTTct---atcgtt------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3741506 178 +  4147112 aCCTCTC-----GAAAGAG--GAACCTATTTCA------ACACACAGTTACCCTCT-TGCCCTTTCAATTTCC------ACTTTATAATCCTATCGGCAGCACTGATAACATCAcatcacatttcatttttctctaactGTTCGTCCTCTCACTCT----TGA----CATTTCAATTAC---------------------AAGATTGTa---------aatgttttctca-atttat------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I
e cb4.chrX              10807321 677 + 21540570 I

a score=60447.000000
s ce10.chrX              5458654 392 + 17718866 TTTTGTTTTCATTCCGC-----------------------CCTCAC---------ATTTGAAGCCTTCAGAATACATTAGCGGCTCTT-------------TTCGTCCAATCCACATGTTTTGGTTGTCTGC-----TGCT-TTTAAACGCTTTATTTTTAC----AACCAACTCCTATT--TTCTGTAGTGTCTTGATTTTTTGTCGATCTGGGGCGGTGAGGTTTTTT--TAGAATAATTGTATTCCTTGCTTTAATGCATACACTTACAGTTTGTT--------GTTTTTTCTTTTTCTCCCTTGTT----CTCTCTTTTTCTCTG--CTTCTCACTTTCTATAATTGCTGATAATTGTCTCTGTG-----TTCGTTCCC--ACGCATTG---ACGAGAACGGCGCAAGAGGGAAAGAGAAAAAAGTTTTTATG--TGGTGACAGTCAGCTTTTAAATACTCTCACAAC-AAACC
s cb4.chrX              10807998 369 + 21540570 ttttgttttcattccGCACCCACACACATTGCTCCACGCTTTTTGCATCGCACTGCTCCGGAGCATTCAGAATACATTAGCTCCTCCT---------------CATCCAATTCAC----------TTTTTGC----------TGTCCACGC-TT-TTCTTAC----Aacc-acttcattttttgttgcaGCAGCC-------TGGTGAAAGCA-------AGTGTATTATGATTTCACAG-tatacattt---tt------ttatttctaaaatGCATCGCTTGTTTCTCACTGAGTGAATGTTTGCGTCTCAACTCCCTTTTTCTACA-------------TTATTGTCCCTAATAATTGTCTCTGTTCCCTCTCCGTTCCC-------------GCGGGAAcgat----taaaaaagaaaaactgagtTTGAAT-----------GTCAGCTTTTCAACACTGT--CAACAAAACT
i cb4.chrX              I 677 C 0
s caeRem4.Crem_Contig0   2216412 387 -  4500979 ttttgttttcattcc-------------------------tTTCGCCGCCCGCGCTTTTGGAGCATTCAGAATACATTAGCTCCTCCT---------------CATCCAATTcac----------tttttgcgtttttgttttctaaacgcttt-ttCTTAC----AACC--CTccagttcatttttcagtagtA------GTGGTAGACGGAGG-CGGCAGTGTCTTTTGATTCCACAGTTTTATATTTCTACT------ATGCttttaaaacactttttctttctacCATTGCATCCATGTCTCTGTTT---CTCTTTATTCCTACAGCCA-----CTTTCTGTAATTGCTGATAATTGTCTGTGTT-------CGTTCCCACAAACATCGGTGGCGAGAACGACGCaagagaaaacacaaaaagagtTTCGACT----GTAACAGTCAGCTTTTCAATACTGT--CAACAAAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     68945 372 -  1189296 ttttgttttcattccaa-----------------------tGCTGCCCTTGG---TTTTGGAGCATTCAGAATACATTagctcctctt---------cttcctcatccaATTCAC----------TTTTTGC-----TGTC-TCTAAacgcttt-ttttttcttacaacc--gcccaatt--tttttcagt-----------gggtTATTGTATGCCGCCAGAATCTTTTGATTCCActgtttcatattttgacT------ATACTTTTAAAACGTCTC--------CCTATAACTCTCGTGTTgttgtt----ctctctctcgttc-----------TCTGCTATAATTGCTGATAATTGTTTCTGTG-----TTCGTTCCC--ACACATCGGTGGCGggaacgagaaaaagaagaagagagaacgcttttttttagttggTGACTGTCAGCTTTTCAATACTTT--CAAC-AAACC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3741684 354 +  4147112 ttttgttttcattccaa--------------------------tCCCTCTAGCT-TTTTGGAGCATTCAGAATACATTAGCCGCTCCTTGCCCGCCCCTTTCTCATCCAATTCAC----------TTTTTGC-----TGTC-ACTAAACGCTTT-TTCTTAC---AAACC--CTaccact--tttttca---------------------gtatgtCAACCAATTC------TTCCACTGTTTTATATTTCTACT------ATACATTTAAAACGTTT----------CTACTACTCTCTATTCCTCgtt----ctctcttctcctccataCACCACATTTTCTGTAATTGCTGATAATTGTCTCTGTG-----TTCGTTCCC--CCCACACGGTGGCGGGAACGAAagacagaaaa---------gttttttttca-------acagtcaGCTTTTCAATACTGT--CAAC-AAACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   592657 740 +   823664 I

a score=6983.000000
s ce10.chrX              5459046 58 + 17718866 ACTGTCAATTG---------AAA-AATGTTTAGACAATTATAAATTTATAATAGAGGCGAGAAG-CGAG--
s cb4.chrX              10808367 55 + 21540570 TTTAATGATGATGACGAGGTAAA-AAAGTTCAAGTAATTA------------GGCAAAACGCAT-CGCG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2216799 66 -  4500979 ATCGCTGACTGTGAAGATTGAAATAATGTTTAAACAATTATATT---ATAATGGGAGCGAGAATGCGAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     69317 56 -  1189296 ACTGttgatgg---------aaa-aatgtttagacAATTATAAT---ATAATGGGGGCGAAAAAGCGAG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3742038 51 +  4147112 AAAGTTG------------------ATGTTGAGACAATTATAATATAAtaatagaaggaaaaaagtgag--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   593397 59 +   823664 ACTGTCAAATG--------GAAA-AATGTTTAGACAATTATAAT---ATAATGGGAGCGGAGCGGAGCGGG
i caeJap4.Scaffold18194 I 740 I 124

a score=6026.000000
s ce10.chrX              5459104 7 + 17718866 ATATCAA
s cb4.chrX              10808422 7 + 21540570 ATGTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2216865 7 -  4500979 ATGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     69373 7 -  1189296 ATGTCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3742089 7 +  4147112 atgtCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   593456 124 +   823664 I

a score=191883.000000
s ce10.chrX              5459111 581 + 17718866  
s cb4.chrX              10808429 542 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2216872 585 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     69380 576 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3742096 639 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   593580 570 +   823664  
i caeJap4.Scaffold18194 I 124 I 94

a score=-130.000000
s ce10.chrX              5459692 34 + 17718866 -AGCCA-CCACCTCGTTGTCTCTGACGGTTTTTCCT--
s cb4.chrX              10808971 23 + 21540570 -GACGG-C-----------AACCGACGACTTTTTCT--
i cb4.chrX              C 0 I 329
s caeRem4.Crem_Contig0   2217457 25 -  4500979 -AACCA-CC---------TCTCTTGTGACTCTTTAT--
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     69956 25 -  1189296 -AGCCA-C-----------CTCTTGTGACTCTTTTCTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3742735 27 +  4147112 AAGCCACC-----------CTCTTGTGACTCTTCTCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   594150 94 +   823664 I

a score=3645.000000
s ce10.chrX              5459726 7 + 17718866 AACCACA
s caeRem4.Crem_Contig0   2217485 7 -  4500979 AACCGCA
i caeRem4.Crem_Contig0  I 3 I 186
s caeSp111.Scaffold626     69981 7 -  1189296 AACCGCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3742762 7 +  4147112 AACCGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   594150 94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I

a score=-98.000000
s ce10.chrX              5459733 10 + 17718866 GAGACAAAGC--
s caeSp111.Scaffold626     69988 10 -  1189296 ACGATACAAC--
i caeSp111.Scaffold626  C 0 I 133
s caePb3.Scfld02_0       3742769 12 +  4147112 ACGATACAAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   594150 94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I
e caeRem4.Crem_Contig0   2217492 186 -  4500979 I

a score=77.000000
s ce10.chrX              5459743 3 + 17718866 GAC
s caePb3.Scfld02_0       3742781 3 +  4147112 TAC
i caePb3.Scfld02_0      C 0 I 139
e caeJap4.Scaffold18194   594150 94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I
e caeSp111.Scaffold626     69998 133 -  1189296 I
e caeRem4.Crem_Contig0   2217492 186 -  4500979 I

a score=0.000000
s ce10.chrX              5459746 749 + 17718866  
e caePb3.Scfld02_0       3742784 139 +  4147112 I
e caeJap4.Scaffold18194   594150  94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I
e caeSp111.Scaffold626     69998 133 -  1189296 I
e caeRem4.Crem_Contig0   2217492 186 -  4500979 I

a score=500.000000
s ce10.chrX              5460495 12 + 17718866 CAGTGAGTGTGT
s caeRem4.Crem_Contig0   2217678 12 -  4500979 cAATAAACATGT
i caeRem4.Crem_Contig0  I 186 C 0
e caePb3.Scfld02_0       3742784 139 +  4147112 I
e caeJap4.Scaffold18194   594150 94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I
e caeSp111.Scaffold626     69998 133 -  1189296 I

a score=447.000000
s ce10.chrX              5460507 4 + 17718866 CAAA
s caeRem4.Crem_Contig0   2217690 4 -  4500979 CAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     70131 4 -  1189296 CAAT
i caeSp111.Scaffold626  I 133 C 0
e caePb3.Scfld02_0       3742784 139 +  4147112 I
e caeJap4.Scaffold18194   594150 94 +   823664 I
e cb4.chrX              10808994 329 + 21540570 I

a score=-257.000000
s ce10.chrX              5460511 2 + 17718866 TG
s caeRem4.Crem_Contig0   2217694 2 -  4500979 CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     70135 2 -  1189296 CC
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   594244 2 +   823664 TA
i caeJap4.Scaffold18194 I 94 C 0
e caePb3.Scfld02_0       3742784 139 +  4147112 I
e cb4.chrX              10808994 329 + 21540570 I

a score=3849.000000
s ce10.chrX              5460513 10 + 17718866 TGTTCAAATT
s cb4.chrX              10809323 10 + 21540570 TGTTCAAATC
i cb4.chrX              I 329 C 0
s caeRem4.Crem_Contig0   2217696  7 -  4500979 TGTTCAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     70137 10 -  1189296 TATTCAAATT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   594246 10 +   823664 TTTTCAAAAC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3742784 139 +  4147112 I

a score=340444.000000
s ce10.chrX              5460523 1015 + 17718866  
s cb4.chrX              10809333 1003 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2217703 1043 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626     70147  956 -  1189296  
i caeSp111.Scaffold626  C 0 I 14
s caePb3.Scfld02_0       3742923  980 +  4147112  
i caePb3.Scfld02_0      I 139 I 7
s caeJap4.Scaffold18194   594256 1041 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-3201.000000
s ce10.chrX              5461538 22 + 17718866 TTGCAAACACGACATATATGGA
s cb4.chrX              10810336  8 + 21540570 -----------AC---TGTGGC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     71117  6 -  1189296 ----------------TTTGAA
i caeSp111.Scaffold626  I 14 I 11
s caePb3.Scfld02_0       3743910  6 +  4147112 ----------------tttgat
i caePb3.Scfld02_0      I 7 I 11
s caeJap4.Scaffold18194   595297  9 +   823664 -------------GCATTCGga
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2218746 19 -  4500979 I

a score=-4922.000000
s ce10.chrX              5461560 12 + 17718866 ACAAAAAATTTA-
s cb4.chrX              10810344 10 + 21540570 --AGAGATATTT-
i cb4.chrX              C 0 I 495
s caeRem4.Crem_Contig0   2218765 12 -  4500979 ACTGAGAATTAT-
i caeRem4.Crem_Contig0  I 19 I 3
s caeSp111.Scaffold626     71134  7 -  1189296 ---aaaaaaa---
i caeSp111.Scaffold626  I 11 I 1
s caePb3.Scfld02_0       3743927  9 +  4147112 ---gaaaaaatt-
i caePb3.Scfld02_0      I 11 I 3
s caeJap4.Scaffold18194   595306 12 +   823664 -atcaaaatttta
i caeJap4.Scaffold18194 C 0 C 0

a score=135377.000000
s ce10.chrX              5461572 163 + 17718866 ATTAACTG---------------CAGGTAACTCTGAACGACACGTTTCTCATCACTTCCGTTGAAACCCAAGGAAGGTATGGAAATGGGACGGGACGGGAGTTTGCGAGCCATTACATGATTGACTACTTACGTCCTGGAAGTCAATGGATACGATATAAAAATAGGACGGGACATGT
s cb4.chrX              10810849 163 + 21540570 ATAAATTT---------------CAGGTCACTCTTAACGACACCTTTTTGATCACTTCTGTTGAAACTCAAGGAAGATACGGAAACGGGACCGGAAGGGAGTTTGCAAGCCATTACATGATTGACTACATGCGACCCGGTAGTCAGTGGATTCGATACCTAAATAGATCTGGTCATGT
i cb4.chrX              I 495 C 0
s caeRem4.Crem_Contig0   2218780 163 -  4500979 ATGTATTT---------------TAGGTCACTCTgaatgacacttttttgataaccGCAGTAGAAACTCAAGGGAGATATGGAAATGGAACAGGGCGAGAGTTTGCAAGCAACTATATGATTGACTACCTCAGAACTGGAAGTCAATGGATAAGATACAAAAATAGAACGGGTCATGT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     71142 163 -  1189296 cgaatttt---------------aaGGTTAATCTGAACGACACTTTCTTGATTACATCTGTTGAAACTCAAGGTAGATATGGAAATGGTACTGGAAGAGAATTCGCGAGTCATTATATGATTGACTACATGAGAACTGGCAGTCAATGGATTCGGTACAGAAATCGTTCTGGTCATGT
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3743939 163 +  4147112 agattcTT---------------CAGGTCACATTGAATGACACATTCTTAATCACAGCCGTTGAGACTCAAGGCAGATATGGAAATGGAACAGGGCGAGAGTTCGCAAGTCACTACATGATTGATTACATGAGAACTGGTAGTCAATGGATTCGGTATAGGAACCGATCAGGACATGt
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   595318 178 +   823664 aaaaattttaacttttaaTTGTCTAGGTCACTCTTAACGATACATTTCTTATAACTGCCGTTGAAACACAAGGAAGGTATGGGAATGGGACAGGAAGAGAGTTTGTGAGTCATTACATGATTGACTATCTAAGAACCGGAAGTCAATGGATACGCTACAAAAACCGGACAGGCCATGT
i caeJap4.Scaffold18194 C 0 C 0

a score=3820.000000
s ce10.chrX              5461735 4 + 17718866 GGTA
s caeRem4.Crem_Contig0   2218943 4 -  4500979 GGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     71305 4 -  1189296 GGTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3744102 4 +  4147112 ggta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   595496 4 +   823664 GGTA
i caeJap4.Scaffold18194 C 0 I 42
e cb4.chrX              10811012 0 + 21540570 C

a score=846.000000
s ce10.chrX              5461739 3 + 17718866 TGT
s caeRem4.Crem_Contig0   2218947 3 -  4500979 TGT
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold626     71309 3 -  1189296 tgt
i caeSp111.Scaffold626  C 0 I 17
e caePb3.Scfld02_0       3744106 0 +  4147112 C
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012 0 + 21540570 C

a score=398.000000
s ce10.chrX              5461742 144 + 17718866 GTGAAATTAAAAGGTGCTTATAAAGACTTTTAGATTTGTGAAAATTTATATTTTGGAAAAGTT-------AAAACATTAACAGATTTAACTGAGCTGAAATATAGAACAATGATTCATTCTTAAGATAAATACGCAACCTGAGGTTGTAAC
s caePb3.Scfld02_0       3744106 104 +  4147112 --aaaattgaaaattg-------------tggcAGTTGTTCA--TTTGGGtttcggaaaagtttgaagcCAGAATATtcctaaatttga---------------------------atttttgaaataatca---aaattaaGGTTTTCAC
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold18194   595500  42 +   823664 I
e cb4.chrX              10811012   0 + 21540570 C
e caeSp111.Scaffold626     71312  17 -  1189296 I
e caeRem4.Crem_Contig0   2218950  40 -  4500979 I

a score=0.000000
s ce10.chrX              5461886 54 + 17718866 TGTGAAAAGTTGCTCAAAACGTCCTCAAATTTTGAAAAATTAAAAAAAAACATT
e caePb3.Scfld02_0       3744210 51 +  4147112 I
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012  0 + 21540570 C
e caeSp111.Scaffold626     71312 17 -  1189296 I
e caeRem4.Crem_Contig0   2218950 40 -  4500979 I

a score=-321.000000
s ce10.chrX              5461940 186 + 17718866 TTTCGATGATTTCTGAGGTATAAATTTTTGGCTTTGTTGTTTGAAATTATTGGTCAATTTAGAACTGCAAACATAAAAACTTTTTTTTCAAATCTGCCTGTAAACTGATTGTAAGCCAAACTATTTAAAAATGTGTAGTTTAAAAATGAAATTTTAGAAAGTTAGTTGTTAACAAATTTTAAACAA
s caePb3.Scfld02_0       3744261 127 +  4147112 TTGgaatagtttcagaa----aaattttcaaaaatgatgttt----------------------ctacgaccgt-------ttttttttcgatcttcCC--AAAT--ATTTTACTCCAAATTCATTCATTAGATGTATTGTACA------------------CAATTGCTTTCA----CTAAACAA
i caePb3.Scfld02_0      I 51 I 75
e caeJap4.Scaffold18194   595500  42 +   823664 I
e cb4.chrX              10811012   0 + 21540570 C
e caeSp111.Scaffold626     71312  17 -  1189296 I
e caeRem4.Crem_Contig0   2218950  40 -  4500979 I

a score=0.000000
s ce10.chrX              5462126 83 + 17718866 GGTAGAGTCTTCATCAAAAAGTTAAATGAAAATTAAATGAATTTCAAAAACATAGCGACTGAAAAACGGGGATTTACAAATTT
e caePb3.Scfld02_0       3744388 75 +  4147112 I
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012  0 + 21540570 C
e caeSp111.Scaffold626     71312 17 -  1189296 I
e caeRem4.Crem_Contig0   2218950 40 -  4500979 I

a score=167.000000
s ce10.chrX              5462209 25 + 17718866 TTCGAAAAATAATGTTTTAAATACA
s caeSp111.Scaffold626     71329 20 -  1189296 TCTGacaagaaatatttgaa-----
i caeSp111.Scaffold626  I 17 C 0
e caePb3.Scfld02_0       3744388 75 +  4147112 I
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012  0 + 21540570 C
e caeRem4.Crem_Contig0   2218950 40 -  4500979 I

a score=0.000000
s ce10.chrX              5462234 3 + 17718866 AAT
e caePb3.Scfld02_0       3744388 75 +  4147112 I
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012 0 + 21540570 C
e caeSp111.Scaffold626     71349 0 -  1189296 C
e caeRem4.Crem_Contig0   2218950 40 -  4500979 I

a score=273.000000
s ce10.chrX              5462237 1 + 17718866 T
s caeRem4.Crem_Contig0   2218990 1 -  4500979 t
i caeRem4.Crem_Contig0  I 40 C 0
s caePb3.Scfld02_0       3744463 1 +  4147112 T
i caePb3.Scfld02_0      I 75 C 0
e caeJap4.Scaffold18194   595500 42 +   823664 I
e cb4.chrX              10811012 0 + 21540570 C
e caeSp111.Scaffold626     71349 0 -  1189296 C

a score=1704.000000
s ce10.chrX              5462238 5 + 17718866 TTCCA
s caeRem4.Crem_Contig0   2218991 5 -  4500979 gtctA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     71349 5 -  1189296 ttgtA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3744464 5 +  4147112 TTTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   595542 5 +   823664 TTTCA
i caeJap4.Scaffold18194 I 42 C 0
e cb4.chrX              10811012 0 + 21540570 C

a score=506409.000000
s ce10.chrX              5462243 721 + 17718866  
s cb4.chrX              10811012 735 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2218996 732 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     71354 731 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3744469 756 +  4147112  
i caePb3.Scfld02_0      C 0 I 60
s caeJap4.Scaffold18194   595547 745 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-24848.000000
s ce10.chrX              5462964 60 + 17718866 CGCACAAAAGCTAGTCAAAGTTGAATA--------------------------------------------------------AATGCTCTATAGCAGAGCTGTGCTCATTCTGAG
s cb4.chrX              10811747 91 + 21540570 ---------------------TGGTTT-TGAAGACATCGAAGCTTAgaaaaaaaccgtaaaacctgtgacaGAAGTGCCACACAATGCCCAGT--TTGAGCTCAGGTGGCTCCGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2219728  9 -  4500979 ---------------------tgaatt--------------------------------------------------------aat------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     72085 18 -  1189296 ---------GGTgctc----tttgttt-tcag------------------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   596292 16 +   823664 ----------------TAAATCAATTTATCAG------------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3745225 60 +  4147112 I

a score=-23743.000000
s ce10.chrX              5463024 57 + 17718866 CAAATTACATTTTCCAAGAGTTACCGGTTTAATTGTGAAAAATA--------TTCCATCAGG-------------TAT
s cb4.chrX              10811838 49 + 21540570 -----------------------------CTCTTTTTGAGGCTCTGGCGCTTTTTTAATAGATTAATcaatcaattat
i cb4.chrX              C 0 I 459
s caeRem4.Crem_Contig0   2219737 21 -  4500979 --------------------------------tttttgca------------ttttaatagg-------------cat
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold626     72103 25 -  1189296 -------------------------ga---CATCTTCAAG------------ATTTCTCAAG-------------CAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745285 51 +  4147112 caactcacaatttttataTGTT--TGATCTTATTgttgaa------------atctgaaagt-------------tgC
i caePb3.Scfld02_0      I 60 C 0
s caeJap4.Scaffold18194   596308  4 +   823664 ------------------------------------CAAA--------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-16866.000000
s ce10.chrX              5463081 102 + 17718866 AGAGAAATAA---------------TTCTGGGTCTTTGTGGTTTCACTGAAGACTTTAAATTTGAACATAAAACCAAGAAAATTCAGTTAATTTGCCGGAATGTTTGTTTTTAGGGA
s caeSp111.Scaffold626     72128  27 -  1189296 CAATATGTAG--------------------------------------------------TTTG-------TAccaaaataatt---------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745336 107 +  4147112 CGATATTTGGCTGTAAAAAAGTTGGTTACTGGTCTAGTTAGGCTGA-GGAACGCCacagttttg-------tgaaaatacCACTTA-TTAAGCTG-TGGAATACGTATTTTGAGTGA
i caePb3.Scfld02_0      C 0 I 42
s caeJap4.Scaffold18194   596312  13 +   823664 ---------------------------------------------------AGAGATTAATTTG-----------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10811887 459 + 21540570 I
e caeRem4.Crem_Contig0   2219758  17 -  4500979 I

a score=0.000000
s ce10.chrX              5463183 17 + 17718866 TAAAAAAAATGTTATTT
e caePb3.Scfld02_0       3745443 42 +  4147112 I
e caeJap4.Scaffold18194   596325  0 +   823664 C
e cb4.chrX              10811887 459 + 21540570 I
e caeSp111.Scaffold626     72155  0 -  1189296 C
e caeRem4.Crem_Contig0   2219758 17 -  4500979 I

a score=-1349.000000
s ce10.chrX              5463200 49 + 17718866 CCTTCGAAAACTCGAACTTTTAGAATCTTCTCCCTCCCATAATTTATTA
s caeJap4.Scaffold18194   596325  1 +   823664 ------------------------------------------------A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3745443 42 +  4147112 I
e cb4.chrX              10811887 459 + 21540570 I
e caeSp111.Scaffold626     72155  0 -  1189296 C
e caeRem4.Crem_Contig0   2219758 17 -  4500979 I

a score=-857.000000
s ce10.chrX              5463249 4 + 17718866 -ATTA
s caeSp111.Scaffold626     72155 4 -  1189296 -atta
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745485 4 +  4147112 -atat
i caePb3.Scfld02_0      I 42 C 0
s caeJap4.Scaffold18194   596326 4 +   823664 AATG-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10811887 459 + 21540570 I
e caeRem4.Crem_Contig0   2219758 17 -  4500979 I

a score=251205.000000
s ce10.chrX              5463253 451 + 17718866 TTTTCAGCCAAGATGGAAAAACATTTCCATTGTTCTCACAAATATCTTCCAGCGAAAGACAATCTCTAAACAACACTAGTAGACGGTAAGTGCA--GTTTT--------TTTACCACGTTGCATTGTTAATTTTCATTT----------TTC--AGTTACGACTTCCGAGTTCCGCTTCACAATCGCGCCGGGAGAAAAGTTCGAATTTCGATCAAGTTTTCATCAGACTGGATGTTTTTAACGGAAGTACATTTTACTTCAGGTA-----------ATTG---GTG--AATCATTTCATATCAATTTT------ATATTTTATAA--TTTCAGCAGCAAATTTGACACTGTTATCTGAAAAAATCCCGCCACCGTCATCAGCAGCAACTCAACAGTTACTTGTCGTTTGCGGAATCATATTTTTAACAATATTCGCATGTGTTGCTTACTGCGTATCTGTATGTTTAAAACGAAGGCAGAAGAACAAAAGTGTGGA
s cb4.chrX              10812346 448 + 21540570 ttttcagccaagATGGAAAGACGTTCCCACTATTTTCTCAAATCAGTTCAAGTGAAAGACAGACGTTGAATAACACCAGTAGACGGTAAATCCA--GTATGATTCTGGGTttaccagaa---------attttttcatt----------ttc--agatatgaTTTCCGAGTGCCTCTTCACAATCGGGCTGGGCGTAAGGTTCGAATTTCCATAAAGTTCTCATCAGATTGGATGTTTCTGACAGAAGTTCATTTCACATCAGGTA-------------TT---TTT--AAAC---ACa---cagtttctcaaaaaaatatca--attattTAGCTGCTAACCTTACACTCATGACTGAAAAGGTCCCGACTCCTGAATCAGCAACAACGCAAAAGTTGTCAGTAATCGGTGGCATAATCTTTTTACTGATCTTCGTTGGTAGCATCTATTGCATCTCGGTTTGTCTGAAACGACGGCAAAAGAACAAGAGCGTAGA
i cb4.chrX              I 459 C 0
s caeRem4.Crem_Contig0   2219775 450 -  4500979 -TTTCAGCCAAGACGGAAAAACCTTTCCATTGTTCTCTCAAATATCTTCAAGTGAACGACAAACTATGAACAACACTAGTAGACGGTAAGTTCA--ATTCAAATCC---TTCatcatta-----tttcaatttgtCCTT----------TTT--AGTTATGACTTCCGTGTTCCTCTTCACAATCGTGCAGGCAGAAAAGTACGGATATCAATCAAGTTCTCGTCAGACTGGATGTTCCTGACGGAAGTTCATTTTACTTCAGGTA-------------CTAACTTA--ATAT---TCACCCCAGATTC------AAGTTTTATGATATTTCAGCTGCAAACCTGACATTGATGTCTGAAAAGATACCTTCACCCCAATCCTCAGCCACTCAACAACTTCTTGTGATATGTGGAATTATCTTCTTGACAATTTTTGCCTGTGTTGCATACTGTATTTCAGTTTGTCTCAAACGCCGACAGAAGAACAAAAGTGTTGA
i caeRem4.Crem_Contig0  I 17 C 0
s caeSp111.Scaffold626     72159 441 -  1189296 atttcAGCCAAGATGGGAAAACGTTCCCTCTGTTCTCACAAATCTCTTCGAGTGAGCGTCAAGCTATCAACAACACAAGCAGAAGGTA---------------------GATACATAGT---------ATGTTCTGCTCACGAGTTGAGTTTCCAGATATGATTTTCGTGTGCCACTTCACAATCGTGCTGGTAGAAAAGTGAGAATCTCAATAAAGTTCTCATCTGATTGGATGTTCCTCACGGAGGTTCATTTCACTTCAGGTA-------------CC---GTACCAAAc---cgaa---aagttttt----aaaacccATCATTTTACAGCAGCAAATCTCACTCTCATGTCTGAAAAAGTCCCAACACCGCAATCAGCAGCTCCCCAACAACTTCTCGTGATTTGTGGAATTATATTCTTAACTTTGTTCGCTTGTACTGCATATTGCATTTCCGTATGCCTGAAACGAAGacaaaagaacaaaagtGTTGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745489 467 +  4147112 ttttcagccaGGATGGAAAAACCTTCCCGTTATTCTCCCAAATTTCGTCAAGTGAACGTCAAACTATCAACAATACCAGCAGACGGTAAGCt-----ttctcatct--gaaaatcaagc---------aTTTTCTACTTTCAATATATGTTT--AGGTATGATTTCCGAGTACCCCTCCACAATCGTGCCGGTCGAAAAGTTAGAATCTCTATCAAGTTTTCTTCTGACTGGATGTTTCTCACAGAAGTTCATTTCACATCAGGTACTACTAATATTATCC---GTA--aagt---caaaatcaaattttc----aaattatgaaaatttccagctgCAAACTTGACTACGATGTCTGAAAAAGTTCCTGCTCCACAATCTGCAGCTACCCAACAACTTCTTGTGATTGGTGGAATCATCTTCCTAACAATATTCGCTTGTTCTGCATATTGTATTTCTGTATGCTTGAAGAGAAGGCAGAAGAACAAAAGCGTTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   596330 462 +   823664 TTTTCAGTCAAGacggaaaaacatttccatttttctcccAGATTTCTTCAAGTGAGCGTCAATCAGCAAACAACACAAGCAGACGGTACATTTAGTGTTTTCTTAT---GTTATCAatc--------taatttgttttt---tattaattcA--AGATATGATTTTCGAGTACCCCTCCACAATAGAGCCGGGCGAAAAGTTAGAATCTCTATCAGATTTTCTTCGGATTGGATGTTCCTCACAGAAGTTCATTTTACATCCGGTG--AGAAAAAAGACGA---GTa--aaac---tcat-----gttttc----attttttttctttttttagctGCAAATTTGACATTGACATCAGAAAAGATGCCAACTGCATCGTCAGCAGCCACCCAACAAATAGCAGTGATATGTGGAATTATTTTCTTGATACTTCTCATTTGCGTTCTCTACTGCATACGAGTTTGCCTTAAGCGAATTAGAAAGAATAAAAGTGTAGA
i caeJap4.Scaffold18194 C 0 C 0

a score=3053.000000
s ce10.chrX              5463704 10 + 17718866 TTCGGTATGT
s caeRem4.Crem_Contig0   2220225 10 -  4500979 CTCGGTATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     72600  6 -  1189296 CTCGGT----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745956 10 +  4147112 CTCAGTGAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   596792 10 +   823664 TTCAGTGAGT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10812794  0 + 21540570 C

a score=273.000000
s ce10.chrX              5463714 1 + 17718866 T
s caePb3.Scfld02_0       3745966 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   596802 1 +   823664 T
i caeJap4.Scaffold18194 C 0 I 138
e cb4.chrX              10812794 0 + 21540570 C
e caeSp111.Scaffold626     72606 0 -  1189296 C
e caeRem4.Crem_Contig0   2220235 0 -  4500979 C

a score=-23.000000
s ce10.chrX              5463715 2 + 17718866 GA
s caePb3.Scfld02_0       3745967 2 +  4147112 TA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   596803 138 +   823664 I
e cb4.chrX              10812794 0 + 21540570 C
e caeSp111.Scaffold626     72606 0 -  1189296 C
e caeRem4.Crem_Contig0   2220235 0 -  4500979 C

a score=-2609.000000
s ce10.chrX              5463717 91 + 17718866 AATTTTGCATTTGGTTCAAGCTTTTTGTTCCAAGTTTGGCCTAAAAAATAATAAAGTTGGCAAGAGTTGGGCAAAAGTTAGGCAAAACTTT
s caeSp111.Scaffold626     72606  1 -  1189296 ------------------------------------------------------------------------------------------T
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3745969  0 +  4147112 C
e caeJap4.Scaffold18194   596803 138 +   823664 I
e cb4.chrX              10812794  0 + 21540570 C
e caeRem4.Crem_Contig0   2220235  0 -  4500979 C

a score=-3133.000000
s ce10.chrX              5463808 38 + 17718866 GGACAAGTTTCG-----------CAATACTATTTAAGG------TTTGCCAAAGT--
s caeSp111.Scaffold626     72607 25 -  1189296 GGTTATGACTCA-----------TGATAGTACTGAA---------------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   596941 57 +   823664 GAacaaattccgttttttttactttatggaatttgaaaaaaatttctgggcaagtgt
i caeJap4.Scaffold18194 I 138 C 0
e caePb3.Scfld02_0       3745969  0 +  4147112 C
e cb4.chrX              10812794  0 + 21540570 C
e caeRem4.Crem_Contig0   2220235  0 -  4500979 C

a score=-3230.000000
s ce10.chrX              5463846 18 + 17718866 TTAACCCAAC-TCTTGCCA-
s caeSp111.Scaffold626     72632 12 -  1189296 ------CAAC-TCCctcta-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3745969  8 +  4147112 -----------TCAATCTG-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   596998 15 +   823664 -----ttaacatttttacAA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10812794  0 + 21540570 C
e caeRem4.Crem_Contig0   2220235  0 -  4500979 C

a score=332.000000
s ce10.chrX              5463864 5 + 17718866 AATTT
s caeRem4.Crem_Contig0   2220235 5 -  4500979 GACTT
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold626     72644 4 -  1189296 -aatt
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3745977 4 +  4147112 -ACTC
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   597013 5 +   823664 TATGC
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10812794 0 + 21540570 C

a score=196.000000
s ce10.chrX              5463869 16 + 17718866 GCCCAAATTTTT-----CTGG
s caeJap4.Scaffold18194   597018 21 +   823664 GATAAAATATTTACACACTGG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3745981  3 +  4147112 I
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I
e caeRem4.Crem_Contig0   2220240 16 -  4500979 I

a score=-2720.000000
s ce10.chrX              5463885 43 + 17718866 -------TGTTTTTTTAAAC----------TTGAGCAAAAGTTTT----------TGAACAATTAGATTA
s caePb3.Scfld02_0       3745984 21 +  4147112 -------------------------------TGAGTA------------------TAAATACTCACgtta
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   597039 70 +   823664 TCcggaaaaagttttcaaactccatggagtttaaaaaaaaaacttaaaatccGCATAAATAATAAcatag
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I
e caeRem4.Crem_Contig0   2220240 16 -  4500979 I

a score=-31.000000
s ce10.chrX              5463928 71 + 17718866 AACTTAGAGGCAACCTGA-------GTCAAGACTTTTTGGCAAGTTTTGAT-CAAAGTTAATTTTGTTTCGACCAAACT
s caeJap4.Scaffold18194   597109 74 +   823664 aa-----aagcaacggaatacattcgtcaaaaatttttgaaacggaaaaattcaaatttaagcgtaaatccacaaattt
i caeJap4.Scaffold18194 C 0 I 49
e caePb3.Scfld02_0       3746005  0 +  4147112 C
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I
e caeRem4.Crem_Contig0   2220240 16 -  4500979 I

a score=0.000000
s ce10.chrX              5463999 19 + 17718866 TTGGAAGAAGCTAGCGCCA
e caePb3.Scfld02_0       3746005  0 +  4147112 C
e caeJap4.Scaffold18194   597183 49 +   823664 I
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I
e caeRem4.Crem_Contig0   2220240 16 -  4500979 I

a score=205.000000
s ce10.chrX              5464018 13 + 17718866 AACCCTGGTAAAC
s caeRem4.Crem_Contig0   2220256  8 -  4500979 AACC-----Aaac
i caeRem4.Crem_Contig0  I 16 C 0
e caePb3.Scfld02_0       3746005  0 +  4147112 C
e caeJap4.Scaffold18194   597183 49 +   823664 I
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I

a score=-703.000000
s ce10.chrX              5464031 13 + 17718866 Caattaaaattaa
s caeRem4.Crem_Contig0   2220264  6 -  4500979 tgatta-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3746005  5 +  4147112 caatt--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   597183 49 +   823664 I
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I

a score=-302.000000
s ce10.chrX              5464044 16 + 17718866 atttaaaaaatGTTTC
s caeRem4.Crem_Contig0   2220270  3 -  4500979 ------------ttt-
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   597232 15 +   823664 atttaataaatgaTT-
i caeJap4.Scaffold18194 I 49 C 0
e caePb3.Scfld02_0       3746010  0 +  4147112 C
e cb4.chrX              10812794  0 + 21540570 C
e caeSp111.Scaffold626     72648  1 -  1189296 I

a score=910.000000
s ce10.chrX              5464060 1 + 17718866 T
s cb4.chrX              10812794 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2220273 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3746010 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   597247 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     72648 1 -  1189296 I

a score=220934.000000
s ce10.chrX              5464061 327 + 17718866 TCAGAATGTCAAAAAAGATTTGATAATCACGCATATGGGGAATAAGCCAACATGTCACGTCTTTCCATCCAACGGGAAACTTTCCAATGGTCATTATGAAGTTGCAAATGATATTCTGTATGCCCGATCGCAAAAGTCTACACTTTTG----------------------------------------------------AGTGTTTCATCGAAATCAACATTTTCTTGCCGTGCAATACCACCGACGTGGACAGATTTCAACTTTCCACCGCCTCCTGAAGGAC----------------------------------------G-------------------------------AGAGGAGCACACCTATTCCCAGCCAGTGTCACCTGAGAAT------AGCAGCAATGGCTCTTATAAAAGTGTTCGGAAAATTCAGGCGCTGTATGTTAA
s cb4.chrX              10812795 369 + 21540570 TCA-AATGTCAAGAAGGACCTGATAATTACCCATATGGGAAACAAACCATCGTGCCACGTGTTCCCATCAAATGGAAAGTTGTCAAATGGCCATTACGAGGTTGCCAATGACATTTTGTATACGAGATCTCAGAAATCTACACTGTTGAGGTC---------AGTAATATTGTTACTGATGTGGCTACTTGGTTATTTCCAGCGTTTCCTCAAAATCCAGCTCATCTTGCCGGGTGATACCTCCGACGTGGAatgattttaattttccacCCCCGCCAG----------------------------------------------A------GCCGAACAA----------------AGAAGAACACACATATTCCCAACCAGTGTCTCCTGAAAAT------AGCAGCAATGGGTCTTataaaagtgtcaaaaaagTTCCTGCCCTGTTAGT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2220274 377 -  4500979 tcagaatgtcaaaaaagatCTGATCATAACTCATATGGGTAACAAGCCAACATGTCATGTCTTCCCATCAAACAACAAATTATCAAATGGTTCTTATGAAGTCGCTAACGACATCCTCTATGCAAGATCACAGAAATCTACGCTGTTA----------------------------------------------------AGTGTCTCGTCAAAATCAAGTTCTTCCTGCCGAGCTATTCCTCCGACATGGAATGATTTCAATTTCCCGCCACCACCAGAAGGAAGAGGTAAC-------------TGACTGATAGTCCAGCCGTA------ACTGAAAAA--------GTACTTTCAGAAGAGCACACCTATTCACAACCTGTTTCTCCAGAGAATACGAGCAGCAGCAACGGATCTTATAGAAGTGtcaagaaaattccagctttGTAAGCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     72649 412 -  1189296 tcagaatgttaaAAAAGATCTTATCATTACACACATGGGTAACAAGCCAACCTGCCATGTGTTCCCGTCGAACGGGAAGATTTCCAATGGACATTATGAAGTCGCAAACGACATTCTATATTCTAGATCACAAAAGTCAACACTCCTAAGGTAATATTACTCCGtaat-tttaatcaaa-------attACTCG-ATTTCAGTGTTTCCTCAAAATCGAGTTCATCGTGCCGAGCAATTCCACCAACATGGAACGATTTCAACTTCCCACCACCACCTGAAGGAAGAGGTGAG----------------ACACTCGTC-------A------AACACACAagtcaatttgtttttgcagAAGAGCATACCTATTCTCAACCGGTATCACCTGAAAAC------AGTAGCAATGGTTCATATCGaagtgtcaaaaaaattcaagcttTGTGAgtaat
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3746011 418 +  4147112 tcagaacgtCAAAAAAGATCTTATCATTACACACATGGGCAACAAACCGACTTGTCATGTTTTCCCGTCAAATGGAAAGATTTCAAATGGACATTATGAAGTTGCCAATGATATTTTGTATGCaagatctcaaaaatctaCTTTGTTAAGGTATTGTT----CTTAATATTCAGTCTAACatg--tatttttctcatttcagtgTCTCTTCCAAATCAAGCTCATCATGTCGAGCAATCCCACCAACTTGGACTGATTTCAACTTTCCACCACCACCGGAGGGAAAAGGTATGT------------TGAATATTTGTC-------ATCACTTATCAAACAA-------TGTATGTACAGAGGAGCACACCTATTCTCAACCAGTATCTCCGGAAAAT------AGTAGCAATGGATCCTATAGAAGTGTCAAGAAGATTCAAGCTTTGTAAGTGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   597248 378 +   823664 ACAGAATGTCAAGAAGGATCTTATCATCACCCATATGGGCAACAAGCCGGCATGTCATGTTTTCCAGTCAAGCAGCAAACTTTCCAATGATCATTATGAGATTGCGAATGATATTGTGTATGCCAGATCTCAGAAATCAACGCTTTTG----------------------------------------------------AGTGTTTCTTCTAAATCGAGCTCTTCTTGCCGCCAAATGCCACCCACATGGAACAACTTCAACTTTCCACCACCTCCAGATTCAAAAGGTGTGTTTTACTTTAAACttgacttttttc-------a------aattataat-------cGTTATTTCAGAAGAACACGTGTACTCGCAACCAGTATCACCAGAAAAC------AGTAGCAACGGTTCTTACCGAAGCATACGGAAAGTTCCAGCGCTGTAAGAGAA
i caeJap4.Scaffold18194 C 0 I 19

a score=-4966.000000
s ce10.chrX              5464388 24 + 17718866 ----TTTTCTATCAAGTTTTGATGTCTA
s cb4.chrX              10813164 23 + 21540570 ----TCGCGCATTCTGTATT-Atttcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2220651 22 -  4500979 ----TTTAGCATTTCATa-t-atttcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     73061 21 -  1189296 ----ttctcaaatttaaA---ACCTCCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3746429 20 +  4147112 CTCATTCACAATTCTA--------TCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   597626 19 +   823664 I

a score=301004.000000
s ce10.chrX              5464412 321 + 17718866 -------AGAACTAAAAT---TTTAGAAAGAAATACCCATCTAGTGCTCTTCTCATTGGAAAAGCCATTGGAGAGGGGAAGTTCACAATGATCAAGGAATGTATCATTTTTGGAGGTCTGAAATGTGCGCACAAGTCGACCAAGGAAGAAGATTGCGTGCATGGTACACGAGCTCTGGGAGATGAGATAGCATGCTTGTTACAGTGTGGAAGGCATCCAAGAATTGTCGAGTTGTTTGGCGTTGATGAGTCATACAACTTGCTCCTCGAGCATGTAGAATATGGTTGCATCAGAAACTTTTGGATGGCTTCCGAAGCGCCATTAGAGTAAG
s cb4.chrX              10813187 321 + 21540570 -------aacataaaaat---tccagaaagaaatATCCAACTAGCGCGCTGCTCATTGGGAAAGCAATTGGCGAGGGAAAGTTCACAATGATCAAGGAGTGTATCATTTTTGGAGGATTGAAATGTGCTCACAAATCGTCGAAGGAAGAAGATTGCGTGCATGGGACACGAGCGATGGGCGATGAGATATCATGCCTATTGAAATGCGGAAGGCATCCACGGATTGTCGAACTCTACGGAGTCGATGAGTCATACAATTTGCTATTGGAGCCTGTGGAGTATGGTTGCATTCGGAACTTCTGGCTAGCATCGGAAACATCTTTGGAGTAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2220673 324 -  4500979 -------acttcaaaaattaattcaggaaaaaatacCCAACTAGTGCGCTGCTAATAGGAAAAGCAATTGGAGAGGGGAAGTTCACTATGATTAAGGAATGTATCATATTTGGAGGTTTGAAATGTGCACACAAATCGACAAAGGAAGAAGATTGCGTGCATGGTACGCGAGCATTAGGGGATGAAATAGCATGTCTGTTAAAATGCGGAAGACACCCTCGAATAGTGGAATTATTTGGAGTCGATGAGTCATATAACTTGCTTTTGGAGCATGTTGAATACGGATGTATCAGGAATTTCTGGTTGGCTTCGGATGCACCTTTAGAGTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     73082 320 -  1189296 -------AATT-CTAAAT---TCCAGGAAGAAATACCCTACTAGTGCACTTCTAATTGGAAAAGCAATAGGAGAGGGGAAGTTCACCATGATTAAAGAGTGCATTATTTTCGGTGGTTTGAAATGTGCTCACAAATCTACAAAGGAAGAGGATTGCGTGCATGGAACACGCGCAATGGGAGATGAAATAGCTTGTCTGTTGAAATGCGGAAGGCATCCGCGGATTGTTGAATTATTCGGAGTCGATGAGTCATACAATTTGCTTTTGGAACACGTGGAGTACGGATGTATAAGGAACTTCTGGTTGGCTTCGGATGCACCGttagagtgag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3746449 321 +  4147112 -------AATTACGAAAT---TTAAGGAAGAAGTATCCCACTAGTGCGCTTTTAATTGGAAAAGCAATTGGAGAGGGGAAGTTCACCATGATTAAGGAGTGTATCATTTTTGGAGGTTTGAAATGTGCTCACAAGTCGACAAAGGAAGAAGATTGCGTGCATGGAACACGAGCAATGACAGATGAAATAGCTTGTCTGTTGAAATGTGGAAGGCATCCAAGGATAGTGGAGTTATTTGGAGTCGATGAGTCATACAACTTGCTTTTGGAACACGTGGAGTATGGGTGTATAAGGAACTTCTTTAGGGCTTCGGATGCACCTTTAGAGTAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   597645 328 +   823664 AGAATTACATTTgtaatt---ttcaggaaaaaatacCCAACTAGCGCATTGCTAATTGGAAAATCCATTGGCGAAGGAAAGTTCACTATAATCAAAGAATGTATCATTTTTGGAGGCCTGAAGTGTGCGCACAAGTCCACAAAGGAAAAAGATTGCGTGCATGGTACACGAGCAATGAGCGATGAGACAGCGTGTCTGTTGAAGTGCGGAAGGCATCCCAGAATTGCCGAACTTTATGGGGTTGATGAGTCATATAATCTGCTCTTGGAGCACGTTGAGTATGGCTGTGTGAGGAACTTTTGGTTGGCCAGCTCGGCGCCGTTAGAGTAAG
i caeJap4.Scaffold18194 I 19 I 158

a score=588.000000
s ce10.chrX              5464733 4 + 17718866 TTTT
s cb4.chrX              10813508 1 + 21540570 T---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2220997 4 -  4500979 TTTT
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold626     73402 4 -  1189296 tttt
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3746770 4 +  4147112 TTTT
i caePb3.Scfld02_0      C 0 I 237
e caeJap4.Scaffold18194   597973 158 +   823664 I

a score=0.000000
s ce10.chrX              5464737 4 + 17718866 CAAG
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e cb4.chrX              10813509 0 + 21540570 C
e caeSp111.Scaffold626     73406 4 -  1189296 I
e caeRem4.Crem_Contig0   2221001 24 -  4500979 I

a score=243.000000
s ce10.chrX              5464741 282 + 17718866 TTCAATAATGAATTATTTGTGCTTTTGAAGAAACTTCTGTTCCTAGAAAGATGGAAAGTATTTCTGAAAACAAAATGTTGGCTCTATATACTTTAACTTAAGTTTCtttaaaaaaaatatttgttttaattttaaGGAG------AACAT------GTATGAAACTGAGAAT---GCAAAAATTCAAATTCGACCTTTAATCGAGAATTTTTGGAAAATCGTTTTCATACAAAA-----AAAATGTTCGACTACGTATCGGAAAATTAAAATTTTAGGAAAACATAAACATCTTGAAATAAT
s cb4.chrX              10813509 238 + 21540570 -----TAATGGGTT--------------------------------AGAGATTGAAGGGAGCATTGTAa-------ttttatattatatattttgac--aattttcataaaaaatagtttcgttttcatttttcatgagcCAAATAACGTGGTACCGTATCCAAtagaaaattaattaaaaatacagtaccggacaataatgaaaaattgttaaaag-------tcctaaaaaaGTTATATAGCATTTTCCGACATGTCTAAAAAT----ATTCCA-------ATATATATTCCAACAAAAT
i cb4.chrX              C 0 I 10
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e caeSp111.Scaffold626     73406   4 -  1189296 I
e caeRem4.Crem_Contig0   2221001  24 -  4500979 I

a score=0.000000
s ce10.chrX              5465023 43 + 17718866 GAATGAAATAATGATCCGGAAATTGCTACCACCCTTATTATAA
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e cb4.chrX              10813747 10 + 21540570 I
e caeSp111.Scaffold626     73406  4 -  1189296 I
e caeRem4.Crem_Contig0   2221001 24 -  4500979 I

a score=-606.000000
s ce10.chrX              5465066 309 + 17718866 GTTTTACAAATGGTCGCTCCTCTACTAAACCAAAAAAAGAGAAGAACAATATTACAGATGGTACCACTAAACGTAAAATGTACCAAACTTTCTCAATAAAAATTACTCACATTTTATTAGTTTTTAATTTCAATTATTTTCACATTTTAGCattttttaataaatttttt------attGAATTT----CACATTTTTCAAGCACATAGAAAGTAATTTTAATTTGGCAATTGGTTTCAAGCTAGGAAATTTCGGAAAAATGTTGAACTACCTGTT-TCCTGTACATGAACCCGTGAAGTGAAAAAT---------CAACAAATTTTAT
s cb4.chrX              10813757 260 + 21540570 GTTTTTCA---GTTCGCTTTTTTGTAATACCCGAAAAAGGAAA---------TATGAGTGGT---------TTTCGAGTGGCCCA-------------------ACTCTTATTTTGATGCTCTT------------TTTTAGCATATCGTAtttttttGTTACACATCTCACCGGaatggaatttggaaaaaatactgTCAAcgtgaaaaaggaaattataCTT------TTGTTT----ATTATGATCTTGCCAAAACATGTATGACAAGTTTTTGTCGTTTA-------CCGTAGACTGATAAATCTGAATTTGCAACCAAGTTAAT
i cb4.chrX              I 10 I 73
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e caeSp111.Scaffold626     73406   4 -  1189296 I
e caeRem4.Crem_Contig0   2221001  24 -  4500979 I

a score=0.000000
s ce10.chrX              5465375 41 + 17718866 ACTCGTATGTATCCTCATGCTCttaaaattactaaaatttt
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e cb4.chrX              10814017 73 + 21540570 I
e caeSp111.Scaffold626     73406  4 -  1189296 I
e caeRem4.Crem_Contig0   2221001 24 -  4500979 I

a score=484.000000
s ce10.chrX              5465416 8 + 17718866 attttata
s caeRem4.Crem_Contig0   2221025 8 -  4500979 ATTTCATG
i caeRem4.Crem_Contig0  I 24 C 0
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e cb4.chrX              10814017 73 + 21540570 I
e caeSp111.Scaffold626     73406 4 -  1189296 I

a score=-14.000000
s ce10.chrX              5465424 5 + 17718866 ttGAT
s caeRem4.Crem_Contig0   2221033 5 -  4500979 tattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     73410 5 -  1189296 tTTCT
i caeSp111.Scaffold626  I 4 C 0
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e caeJap4.Scaffold18194   597973 158 +   823664 I
e cb4.chrX              10814017 73 + 21540570 I

a score=881.000000
s ce10.chrX              5465429 8 + 17718866 AATACATC
s caeRem4.Crem_Contig0   2221038 8 -  4500979 atttcatt
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626     73415 8 -  1189296 AAAACAAT
i caeSp111.Scaffold626  C 0 I 5
s caeJap4.Scaffold18194   598131 8 +   823664 aatttatt
i caeJap4.Scaffold18194 I 158 C 0
e caePb3.Scfld02_0       3746774 237 +  4147112 I
e cb4.chrX              10814017 73 + 21540570 I

a score=-6003.000000
s ce10.chrX              5465437 9 + 17718866 ---TATGTTA--AT
s caeRem4.Crem_Contig0   2221050 9 -  4500979 ---actgttcaa--
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626     73428 7 -  1189296 ---actgaaa----
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3747011 7 +  4147112 ---cgtttta----
i caePb3.Scfld02_0      I 237 C 0
s caeJap4.Scaffold18194   598139 9 +   823664 gattttgat-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10814017 73 + 21540570 I

a score=465948.000000
s ce10.chrX              5465446 1225 + 17718866  
s cb4.chrX              10814090 1294 + 21540570  
i cb4.chrX              I 73 C 0
s caeRem4.Crem_Contig0   2221059 1287 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     73435 1257 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3747018 1288 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   598148 1148 +   823664  
i caeJap4.Scaffold18194 C 0 I 23

a score=13692.000000
s ce10.chrX              5466671 22 + 17718866 ACTCTGTTTATATGGTTTTTAC
s cb4.chrX              10815384 22 + 21540570 ACTCTGTTTAATTGGTCTTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2222346 22 -  4500979 ATTCTGTTTAAATGGTCTTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     74692 22 -  1189296 ACTATGTTTAAATGGTCTTTAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3748306 21 +  4147112 ACTTTGTTAAAATGGTC-TTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   599296 23 +   823664 I

a score=870.000000
s ce10.chrX              5466693 49 + 17718866 GCGTATTGA-----ATTTTTATTTTTACTTTCTTCAACAAATAAAATGTTT---TAC
s cb4.chrX              10815406 41 + 21540570 GCgtattga-----atttttattt--------cacactgaaaataaagttt---tat
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2222368 36 -  4500979 GCGTATAGA-----ATTTGTCT-------------ACTCAATAAAAAGTTA---TAC
i caeRem4.Crem_Contig0  C 0 I 127
s caeSp111.Scaffold626     74714 37 -  1189296 GCGTATTGA-----ATTTGT---------------ACCCAATAAAAACTGTTCTTAC
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3748327 41 +  4147112 GCGTATTGAAAGTCAATTGT---------------acccaataaaaatttttc-tac
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   599319 21 +   823664 AAGTACTGA-----ATTATG---------------ACTAAC----------------
i caeJap4.Scaffold18194 I 23 C 0

a score=459.000000
s ce10.chrX              5466742 6 + 17718866 ATTTTC
s cb4.chrX              10815453 6 + 21540570 attctt
i cb4.chrX              I 6 I 4
s caeSp111.Scaffold626     74756 6 -  1189296 ATTCTT
i caeSp111.Scaffold626  I 5 I 30
s caePb3.Scfld02_0       3748373 6 +  4147112 gatttt
i caePb3.Scfld02_0      I 5 I 36
s caeJap4.Scaffold18194   599340 4 +   823664 ATTT--
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2222404 127 -  4500979 I

a score=0.000000
s ce10.chrX              5466748 8 + 17718866 TTAATGCT
e caePb3.Scfld02_0       3748379 36 +  4147112 I
e caeJap4.Scaffold18194   599344 0 +   823664 C
e cb4.chrX              10815459 4 + 21540570 I
e caeSp111.Scaffold626     74762 30 -  1189296 I
e caeRem4.Crem_Contig0   2222404 127 -  4500979 I

a score=-3023.000000
s ce10.chrX              5466756 535 + 17718866  
s caeJap4.Scaffold18194   599344 428 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3748379  36 +  4147112 I
e cb4.chrX              10815459   4 + 21540570 I
e caeSp111.Scaffold626     74762  30 -  1189296 I
e caeRem4.Crem_Contig0   2222404 127 -  4500979 I

a score=-1741.000000
s ce10.chrX              5467291 49 + 17718866 ---atcacgcgacatcaatcctGACCAA---------------TTCACTTGATATGAATAATAATAA
s cb4.chrX              10815463 53 + 21540570 ---aTCACGCGACCTTCATCA--GTTCTATCATTTTCA-----TTCCTTCTATAtcataaaaa----
i cb4.chrX              I 4 I 23
s caeSp111.Scaffold626     74792 59 -  1189296 ---ATCACGCGACTATAGCCATTCTCCaacctttcttt-----ttcaatcggTATCAAAAATATCAC
i caeSp111.Scaffold626  I 30 I 10
s caePb3.Scfld02_0       3748415 62 +  4147112 ---ATCACGCGACTACAGTCATAATCTAAcctttctttgtttctctattcgatatcaaaaatatc--
i caePb3.Scfld02_0      I 36 I 6
s caeJap4.Scaffold18194   599772 35 +   823664 CCGACAAACCGGCTTTGA-------------------------ATAAATTTACATGATAA-------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2222404 127 -  4500979 I

a score=10080.000000
s ce10.chrX              5467340 40 + 17718866 TATCAAATCTCTCTCAAAAAGAGAATAAACCTGCTTTGAA
s cb4.chrX              10815539 39 + 21540570 AAAAATATCTCT-TGCATGAAACAATGAACCTGCtttgaa
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   2222531 40 -  4500979 TATAATATCTCTCTTCATGATACAATGAACCTgctttgaa
i caeRem4.Crem_Contig0  I 127 C 0
s caeSp111.Scaffold626     74861 29 -  1189296 TGT---GTCTCTATTC--------ATGAACctgctttgaa
i caeSp111.Scaffold626  I 10 C 0
s caePb3.Scfld02_0       3748483 32 +  4147112 TGTACAATATCTATTC--------ATGAACCTGctttgaa
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18194   599807 26 +   823664 --------------TATGAGAAAAATAAATCCGATTTTCA
i caeJap4.Scaffold18194 C 0 I 21

a score=636.000000
s ce10.chrX              5467380 52 + 17718866 AAATA--------------AAAAAAGAT-------------AGGTAGACTTATTTGTGTTGACCGCTCAAATCGAGTGA
s cb4.chrX              10815578 56 + 21540570 aatatatag----------aaGAAAGATAAAAAGAGATAGGACACAGATCTA-TCAAAACG------------GAGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2222571 45 -  4500979 aataga----------------aaagat-------------aCACAGACTTA-TCATTTCATCTTTTC----CAACTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     74890 49 -  1189296 aatg---------------aaaaaggat-------------aCGCAGACTTA-TCATTTCAACCGCTCAGA-AGAATGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3748515 64 +  4147112 aaaggagaagaaaaaaaatgaaaaggat-------------aCGCAGACTTA-TCATCTCCAACCATCAGG-AGAATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   599833 21 +   823664 I

a score=91411.000000
s ce10.chrX              5467432 228 + 17718866 CA----AAAACCTGATAA-ATGAACACGT----GGCGC---GAGATGATTTGCAGTATA-TAGAAAAAATCGGCTGTAATCTTATCAG---TTCTGTTC-GTTGATACAATCTCGGCAT--TCATTACCTTTC---TTTTTCTCC--------------TACTTTATCA-------TTTTTCCTT----TGATACAGTCAACC-CCCGTTTTC---------------------GTTGGTCAGTCGACGC----GCTGTCAGCGTATCGAAAGTCGAGAAAACCTTT--------------------------------TGTACCATCGCTTT-------
s cb4.chrX              10815634 273 + 21540570 CAATCGAAGACTTGATAACCTGAACACGT----GGCGC----TGATGATATGCAGTATATTAG-GAAAATCGGCTGTAATCTTATCAG---TTCTGTTCGGTTGATACGATCTCGGCATTCTCATTACCTCTCTCACCTTTCTCTTCACCTTTTTTGCCTATATTATcagttctcatttttcttt---tcaatataGT--CCC-CTCGTCCTCTTTCTATCTTTCTCTCTGTCATTTGGTCTGGCA--GC----GCGGGTTGCTGCCTGTATCGTGTCGTGAATTTT------------------------------------TTGTCTCCTT-------
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2222616 218 -  4500979 CA----AGAACCTGATAA-ATGAACACGT----GGCGC--CTCGATGATTTGCAGTATA-TAG-GAAAATCGGCTGTAATCTTATCAG---TTCTGTTC-GTTGATACAATCTCGGCAT--TCATtacctttt---cttttctct--------------tattttatcagttctcgttttctttc------ataCAGT--CACGCTCATTT-----------------------ATTGGTCAGACGACGC----GCGGCCTGCTGCC--------GTGATAATTTTT------------------------------------CTGCCGTTTT-------
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626     74939 224 -  1189296 CA----AGAACCTGATAA-AAGAACACGT----GGCGC---TCGATGATTTGCAGTATA-TAG-GAAAATCGGCTGTAATCTTATCAG---TTCTGTTC-GTTGATACAATCTCGGCAT--TCA--------CTCCTTTTTCATC--------------Tactttatcagtttttcaatttctct----taaTATAGTCCACC-CCCTTTTCGT--------------------TTTAGTCAGTCGGCGC----GCTGATTGCAACC-------GGTGAAATCGTTT-------------------------------TAGTCTCATCAAATt-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3748579 246 +  4147112 CA----AGAACCTGATAA-ATGAACACGTGGCGGGCGC---TCAATGATTTGCAGTATA-TAG-GAAAATCGGCTGTAATCTTATCAG---TTCTGTTC-GTTGATACAATCTCGGCAT--TCattaccttttttctttttcgcc--------------tACTTTAtcagttctcattttctttt----caatacaGT--GCC-CCCACTTCAT--------------------TTTGGTCAGTCGACGC----GCTGCCTGCAGCCATGATTGAGTGAAAACCTTT------TTC--------------------TATAATTCtgtcacatt-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   599854 272 +   823664 CG----ACACCTTGATAA-TCAAACACGT----GGCGCTGCGTATCGATTCTGAG-----AAA-GAATACTGGCTATAATCTTATCAGTTCTTCTGTTCGGTTGATACAACCTGGGCAT--TCATTACCTT-----CTTCTCGTC--------------TACTTTATCAGTTCTGATTTCCCTTCTTCTCAAATCAGT------CGCG--------------------------ATCAGTCATTCGACATCACGGCAATCTCGAAACCGTACCCTGTGTTTTCttttgagaattttgaaaGTTATATAATGTagaataaaatgttttttttttgttggtc
i caeJap4.Scaffold18194 I 21 C 0

a score=-13210.000000
s ce10.chrX              5467660 31 + 17718866 GAAGTAGGATGTTTTG--------------------------AATC-------AAAAAAAAAAT-------------------------
s cb4.chrX              10815910 21 + 21540570 -------------------------------------------GACTGATGTTGATAGAAAAGT-------------------------
i cb4.chrX              I 3 I 5
s caeSp111.Scaffold626     75163 14 -  1189296 -------------------------------------------gac-------aacagaaaaac-------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3748825 21 +  4147112 ----------ttttct--------------------------gaac-------attcaaTATAC-------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   600126 82 +   823664 gATGTTGCCTGTTTTGTCTCGATGCTTTTTTAtcgagaaattaaaa-------aaaaaaaaggcggcCCGATACGACGCACCAATAGGT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2222834 15 -  4500979 I

a score=23448.000000
s ce10.chrX              5467691 399 + 17718866  
s cb4.chrX              10815936 413 + 21540570  
i cb4.chrX              I 5 I 695
s caeRem4.Crem_Contig0   2222849 415 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626     75177 383 -  1189296  
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3748846 402 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18194   600208 457 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-6038.000000
s ce10.chrX              5468090 27 + 17718866 ------------------------TACTAAACTTAAAAAGTTGTACAAGAT
s caeRem4.Crem_Contig0   2223264 26 -  4500979 -------------------------TGTAACGTTGAAACTTTCTTCTTGAA
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold626     75564 26 -  1189296 -------------------------TGTCACGTTTGAAACATTTATAAGTT
i caeSp111.Scaffold626  I 4 I 43
s caePb3.Scfld02_0       3749252 26 +  4147112 -------------------------TGTCACgtttaacaactttttttgat
i caePb3.Scfld02_0      I 4 I 54
s caeJap4.Scaffold18194   600665 42 +   823664 TGGTAGACATGGCGgaaagtaaataaaaaacatgaaaaacgt---------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10816349 695 + 21540570 I

a score=201026.000000
s ce10.chrX              5468117 275 + 17718866 AATTCCG-----ATTTCAGAGTCTCCTCATCTTGAACCCAAAAGTACAAGACAAGGCAAATGCAGTTCCAAGTGCGGTGACAAAGAAAAACAAGCACAACTGGAAGAGAAACGAGGAGAAAGGATGTGGATCTGTAA---TTTTG-GAACTCAGAA-GATAAAACTTCA---TTTT--------------CAAT----TTTTCAGACCTGCGGAGAATCTAAGCTCAAGAATGACTTCCGAGACATCAAGCACACTACGCTCAGTGAGCGCGGAGCTTTGAAGGAAGCGATGAGGTATAAAATAAA
s cb4.chrX              10817044 276 + 21540570 aatttcaa----tttccagagtCTCCTCATCCTTAACCCAAAAGTCCAAAGCAAGGCCAACGCGGTACCAAGTGCTGTCACCAAGAAGAATAAGCACAATTGGAAGAGAAACGAGGAGAAAGGATGCGGAGCGgtaaatttgtca-attttcagaacatt--tgtTTCA---TTTT----------------AC----GTTTCAGTCTTGTGGAGAatccaaactgaaaaatgattttcgtGACATCAAGCACACAACTCTCAGTGAGCGCGGAGCTCTGAAAGAGGCTATGAGGTGTGTAATGAA
i cb4.chrX              I 695 I 178
s caeRem4.Crem_Contig0   2223335 286 -  4500979 aatatcaacaatTTTCCAGAGTCTTCTCATCTTGAATCCAAAAGTACAATCGAAGGCTAATGCTATCCCAAGTGCTGtcaccaaaaaaaacaagcataACTGGAAGAGAAACGACGAGAAGGGGTGTGGAGCGGTAA-----TAA-TCTTTCAGGA-------GTTTCA---GGTTCTCGAACAAATACATGAT----ATTTCAGACATGTGGAGAGTCCAAACTTAAGAATGACTTCCGCGACATCAAGCATACAACACTCAGTGAACGTGGAGCACTGAAAGAAGCTATGAGGCATGTACAGAA
i caeRem4.Crem_Contig0  I 45 I 21
s caeSp111.Scaffold626     75633 280 -  1189296 AATGTTGGCA--TTTCCAGAGTCTTCTTATCTTGAACCCAAAAGTTCAAGCCAAAGCAAACGCTGTTCCCAGTGCCGTCaccaagaaaaacaagcacaactggaagagaaatgacgaaaaagGATGTGGAGCTGTAA-----TAACAcatttattgaaat--gaattca---attt--------------tgattctgatttcagacATGCGGagaatcaaaattgaaaaatgacttcCGTGACATCAAGCATACAACTCTCAGTGAACGCGGAGCCCTTAAAGAGGCTATGAGGTTAGTAGGAGA
i caeSp111.Scaffold626  I 43 I 15
s caePb3.Scfld02_0       3749332 273 +  4147112 GATGTT------CTTTCAGAGTCTTCTAATTTTGAACCCGAAGGTTCAAGACAAAGCAAACGCTGTTCCAAGTTCCGTCACTAAGAGAAACAAGCACAACTGGAAGAGAAATGACGAGAAGGGATGTGGAGCGGTAA-----TTG-AAACTTGataaaattcagattcagaGATTT--------------TGAC----ATTTCAGACATGTGGagaatcaaaactgaaaaatgacttcCGTGATATCAAGCACACTACTCTTAGTGAACGCGGAGCTTTGAAAGAGGCTATGAGGTAAAAATG---
i caePb3.Scfld02_0      I 54 I 14
s caeJap4.Scaffold18194   600707 276 +   823664 -aTTT-------ATTGCAGAGTCTACTCTCCCTCAACCCAAAAGTTCAGTACAAAGCGAACGCTGTTCCAAGTTTGGTCACCAAGAAAAACAAGCACAACTGGAagagaaatgaagagaaggGCTGTGGAGCGGTAAGtttataa-tttttcgaaaatattaaatgcct---tttt--------------tctt----ttttcagacATGCGGTGAATCGAAGCTGAAAAATGACTTCCGAGATATCAAGCACACCACTTTGAGCGAGCGCGGAGCCTTGAAAGAAGCCATGAGGTAGGTcgaaaa
i caeJap4.Scaffold18194 C 0 C 0

a score=15755.000000
s ce10.chrX              5468392 52 + 17718866 GGACAGT-------GTGACGTAGTGATCTATGAAAAATCAG--ATATAATGTGATACTGAT
s caeRem4.Crem_Contig0   2223642 53 -  4500979 tgtgacA-------GTGACGTAGTGATCTATGAgaaatcat-tttctgatttgataCTGAT
i caeRem4.Crem_Contig0  I 21 I 68
s caeSp111.Scaffold626     75928 49 -  1189296 TCA------------TGACGTAGTGATCTacgaaaaaccaattttttgatatgatactgat
i caeSp111.Scaffold626  I 15 C 0
s caePb3.Scfld02_0       3749619 52 +  4147112 tgaagga-------gtgACGTAGTGATCTAtgagaaatcag--ttttgatttgataCTGAT
i caePb3.Scfld02_0      I 14 I 178
s caeJap4.Scaffold18194   600983 40 +   823664 -gaaacattttttgatgacGTAGTgatctttgagaaatcat--------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10817320 178 + 21540570 I

a score=420.000000
s ce10.chrX              5468444 4 + 17718866 TATT
s caeSp111.Scaffold626     75977 4 -  1189296 tttt
i caeSp111.Scaffold626  C 0 I 89
s caeJap4.Scaffold18194   601023 4 +   823664 tttc
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e cb4.chrX              10817320 178 + 21540570 I
e caeRem4.Crem_Contig0   2223695 68 -  4500979 I

a score=476.000000
s ce10.chrX              5468448 211 + 17718866 TTAGGGGTATTGTAGTTCGGAAACATTTTGAGAGAAGTGTGAAAGAAGTTTGAAAGGCAAGCAATACTAATTTTCGGAACCTCTACATTTCGTTTATAAAGTGCAATAAGAAAATTTTGCAATAAATT------AAAGGGAGTGTAGTGTCAGTTAGGATTTTGTTCAAGTTTACTTTTAAATTGAAAGAATATCATACATATTTGaaaaatatatt
s caeJap4.Scaffold18194   601027 189 +   823664 aTGACCGACGCGCACTTTGGACGAATTCATCgacaattgtgaaaaaaattta-----ccagaaataaaaattttgacatgTTCAACATTTA---TATTTCGTATAAAAACAGGAATTcatattatatttttttcgaaagaaaAACAGT--------------CATTTGAATTTGGATATAAA---AAAGGAAgctat---tgtcaaaaaaataaatt
i caeJap4.Scaffold18194 C 0 I 85
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981  89 -  1189296 I
e caeRem4.Crem_Contig0   2223695  68 -  4500979 I

a score=0.000000
s ce10.chrX              5468659 98 + 17718866 taaaaacaattaattaaaacataacaaaataataaaGTTCGTGGAAAAAAAACTTTTTTGGTCGGCTTTTAATTTGAATTTATTGGTTTCAATAACTT
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e caeJap4.Scaffold18194   601216 85 +   823664 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981 89 -  1189296 I
e caeRem4.Crem_Contig0   2223695 68 -  4500979 I

a score=543.000000
s ce10.chrX              5468757 112 + 17718866 AGTAACTGACAATTGTAAAAAAATG------TAAAAATTGAAT-AGAACAT-CCTCACCGCTCTCTTTATTTTCATAAAATTAATTAGTTTTAAGTCTAAAGTTTCCTGCAAAAAGGACG
s caeJap4.Scaffold18194   601301 112 +   823664 GGCAACCTACAGtaacacaaaaattacgatttACAAAGTGATTTAGACCATGCCCCTAAAATGTGTTTATCTCGtt----tttacttgtttttttttta----tttctgcaAAAGAAACT
i caeJap4.Scaffold18194 I 85 I 72
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981  89 -  1189296 I
e caeRem4.Crem_Contig0   2223695  68 -  4500979 I

a score=0.000000
s ce10.chrX              5468869 52 + 17718866 TCAGACTCAAAATACTCACAGTACATTCTAACAGCCCTATTTTTGGAAAAAG
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e caeJap4.Scaffold18194   601413 72 +   823664 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981 89 -  1189296 I
e caeRem4.Crem_Contig0   2223695 68 -  4500979 I

a score=-12.000000
s ce10.chrX              5468921 78 + 17718866 GGAAAAGTAGATTCAGCAACCAACTTTGTGAAGTTAAAACTCATTTCTAATCATTTCTAAACTATCTTATCTAAACCC
s caeJap4.Scaffold18194   601485 65 +   823664 GGAAGAGCG-----------cgattttg-aaattctaaGTACAGACATTATTATTAACCGACAATCTCATA-AAACCA
i caeJap4.Scaffold18194 I 72 C 0
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981 89 -  1189296 I
e caeRem4.Crem_Contig0   2223695 68 -  4500979 I

a score=-469.000000
s ce10.chrX              5468999 12 + 17718866 ------ATGTACTTGGTA---
s caeRem4.Crem_Contig0   2223763 12 -  4500979 ------ATCTACTTTATA---
i caeRem4.Crem_Contig0  I 68 C 0
s caeJap4.Scaffold18194   601550 21 +   823664 ATAAATATATGGTTTTTGGTT
i caeJap4.Scaffold18194 C 0 I 11
e caePb3.Scfld02_0       3749671 178 +  4147112 I
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981 89 -  1189296 I

a score=657.000000
s ce10.chrX              5469011 3 + 17718866 TTT
s caeRem4.Crem_Contig0   2223775 3 -  4500979 TCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3749849 3 +  4147112 TCT
i caePb3.Scfld02_0      I 178 C 0
s caeJap4.Scaffold18194   601582 3 +   823664 TCT
i caeJap4.Scaffold18194 I 11 C 0
e cb4.chrX              10817320 178 + 21540570 I
e caeSp111.Scaffold626     75981 89 -  1189296 I

a score=910.000000
s ce10.chrX              5469014 1 + 17718866 T
s caeRem4.Crem_Contig0   2223778 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     76070 1 -  1189296 t
i caeSp111.Scaffold626  I 89 C 0
s caePb3.Scfld02_0       3749852 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   601585 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10817320 178 + 21540570 I

a score=1232331.000000
s ce10.chrX              5469015 1621 + 17718866  
s cb4.chrX              10817498 1573 + 21540570  
i cb4.chrX              I 178 C 0
s caeRem4.Crem_Contig0   2223780 1701 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     76071 1685 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3749853 1706 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   601586 1781 +   823664  
i caeJap4.Scaffold18194 C 0 I 31

a score=-7098.000000
s ce10.chrX              5470636 1 + 17718866 A-------
s cb4.chrX              10819071 7 + 21540570 ACT-TATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2225481 7 -  4500979 AGT-GTGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     77756 3 -  1189296 AGA-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3751559 4 +  4147112 TCTA----
i caePb3.Scfld02_0      C 0 I 33
e caeJap4.Scaffold18194   603367 31 +   823664 I

a score=-5879.000000
s ce10.chrX              5470637 35 + 17718866 ----------AAATCTTAATGGGCAGAATTCTTATTTTGGCAAAT---------
s cb4.chrX              10819078 25 + 21540570 ----------AGACCCTAATGGATCtaac--------------attcaa-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2225488 29 -  4500979 ----------AACGGCTGGGGGACTTGA---------------ATTCAAATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     77759 31 -  1189296 ACATTGGATCATTCGGAAGAggatgaaat--------------at---------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3751563 33 +  4147112 I
e caeJap4.Scaffold18194   603367 31 +   823664 I

a score=1508284.000000
s ce10.chrX              5470672 1605 + 17718866  
s cb4.chrX              10819103 1590 + 21540570  
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2225517 1587 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626     77790 1584 -  1189296  
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3751596 1589 +  4147112  
i caePb3.Scfld02_0      I 33 I 32
s caeJap4.Scaffold18194   603398 1608 +   823664  
i caeJap4.Scaffold18194 I 31 C 0

a score=-11288.000000
s ce10.chrX              5472277 37 + 17718866 --AATATTACAACCCACTCCCACAAAAAAATTTTAAAAA
s cb4.chrX              10820695 21 + 21540570 --------------TAATACTTCGAGTAGC----AACTA
i cb4.chrX              I 2 I 4
s caeRem4.Crem_Contig0   2227109 29 -  4500979 --cacatt----tgtttttcttagaataca----aaaaa
i caeRem4.Crem_Contig0  I 5 I 1
s caeSp111.Scaffold626     79376 23 -  1189296 --tatttcgaaatgtgttttttaaa--------------
i caeSp111.Scaffold626  I 2 I 6
s caeJap4.Scaffold18194   605006 28 +   823664 AAAATCTCCTACAGTAATCTGTGAAACA-----------
i caeJap4.Scaffold18194 C 0 I 3
e caePb3.Scfld02_0       3753185 32 +  4147112 I

a score=247569.000000
s ce10.chrX              5472314 550 + 17718866  
s cb4.chrX              10820720 493 + 21540570  
i cb4.chrX              I 4 I 1133
s caeRem4.Crem_Contig0   2227139 566 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 774
s caeSp111.Scaffold626     79405 522 -  1189296  
i caeSp111.Scaffold626  I 6 I 465
s caePb3.Scfld02_0       3753217 549 +  4147112  
i caePb3.Scfld02_0      I 32 I 1141
s caeJap4.Scaffold18194   605037 540 +   823664  
i caeJap4.Scaffold18194 I 3 C 0

a score=0.000000
s ce10.chrX              5472864 6 + 17718866 AAAGAT
e caePb3.Scfld02_0       3753766 1141 +  4147112 I
e caeJap4.Scaffold18194   605577 0 +   823664 C
e cb4.chrX              10821213 1133 + 21540570 I
e caeSp111.Scaffold626     79927 465 -  1189296 I
e caeRem4.Crem_Contig0   2227705 774 -  4500979 I

a score=787.000000
s ce10.chrX              5472870 35 + 17718866 GTTTCAGTTTCCGAATATATCTGATATTAGATATA
s caeJap4.Scaffold18194   605577 29 +   823664 ---TCAGTGTTAAAATATCACTG---TTAGGTACA
i caeJap4.Scaffold18194 C 0 I 887
e caePb3.Scfld02_0       3753766 1141 +  4147112 I
e cb4.chrX              10821213 1133 + 21540570 I
e caeSp111.Scaffold626     79927 465 -  1189296 I
e caeRem4.Crem_Contig0   2227705 774 -  4500979 I

a score=0.000000
s ce10.chrX              5472905 2010 + 17718866  
e caePb3.Scfld02_0       3753766 1141 +  4147112 I
e caeJap4.Scaffold18194   605606  887 +   823664 I
e cb4.chrX              10821213 1133 + 21540570 I
e caeSp111.Scaffold626     79927  465 -  1189296 I
e caeRem4.Crem_Contig0   2227705  774 -  4500979 I

a score=500.000000
s ce10.chrX              5474915 63 + 17718866 TGAATTATCTGCACGCTTCTTATACATTCACTTCGTTTTGTATTTATGATTTCGTATAAAAAG
s caePb3.Scfld02_0       3754907 46 +  4147112 TAACTTTTCTGCTTGTCGCATATTCATTCACTT-----------------TCCACACCCAAAT
i caePb3.Scfld02_0      I 1141 C 0
e caeJap4.Scaffold18194   605606 887 +   823664 I
e cb4.chrX              10821213 1133 + 21540570 I
e caeSp111.Scaffold626     79927 465 -  1189296 I
e caeRem4.Crem_Contig0   2227705 774 -  4500979 I

a score=600.000000
s ce10.chrX              5474978 2 + 17718866 CC
s cb4.chrX              10822346 2 + 21540570 CC
i cb4.chrX              I 1133 C 0
s caePb3.Scfld02_0       3754953 2 +  4147112 CC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   605606 887 +   823664 I
e caeSp111.Scaffold626     79927 465 -  1189296 I
e caeRem4.Crem_Contig0   2227705 774 -  4500979 I

a score=1056.000000
s ce10.chrX              5474980 2 + 17718866 -CT
s cb4.chrX              10822348 2 + 21540570 -CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2228479 2 -  4500979 -CT
i caeRem4.Crem_Contig0  I 774 C 0
s caePb3.Scfld02_0       3754955 3 +  4147112 GCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   605606 887 +   823664 I
e caeSp111.Scaffold626     79927 465 -  1189296 I

a score=-1579.000000
s ce10.chrX              5474982 5 + 17718866 TCTAT
s cb4.chrX              10822350 5 + 21540570 CCTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2228481 5 -  4500979 GCCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3754958 1 +  4147112 C----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   606493 5 +   823664 TCTAT
i caeJap4.Scaffold18194 I 887 C 0
e caeSp111.Scaffold626     79927 465 -  1189296 I

a score=385362.000000
s ce10.chrX              5474987 655 + 17718866  
s cb4.chrX              10822355 731 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2228486 650 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     80392 677 -  1189296  
i caeSp111.Scaffold626  I 465 C 0
s caePb3.Scfld02_0       3754959 663 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   606498 705 +   823664  
i caeJap4.Scaffold18194 C 0 I 1020

a score=13214.000000
s ce10.chrX              5475642 64 + 17718866 CTGCGGCCCATTACTTCG-CCATC-GGTACT--CCTCCACAG---------ACCACCTATGT---TGTTTTTCACTATTT-
s cb4.chrX              10823086 72 + 21540570 CTGCGGCCCATTACCTTTGCTACC-GGAAGATTCTACAGAAacaatttctcactttttctgtCTCTG--------TGTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2229136 59 -  4500979 CTGCGGCCCATTACCTTC-CTACC-GGCACCACCTACCACAG---------ACTGCTTTTGT---TG--------GGCTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     81069 58 -  1189296 CTGCGGCCCATTACCTTG-CTACC-GGCACTGCCTACCACTC---------ACTTCCTTTGT---TG--------GGCTT-
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3755622 67 +  4147112 CTGTGTCCCATTACCTTG-CTACCGGGCATTGCCTACCTCAG---------CCCCTCATTGT---TGTTTTGTATGGTTT-
i caePb3.Scfld02_0      C 0 I 972
e caeJap4.Scaffold18194   607203 1020 +   823664 I

a score=-7329.000000
s ce10.chrX              5475706 47 + 17718866 -TAATTTTAAAAAAGAAAGGTTTTATTTTAAT--------------GTGCATTCTGAAAT--GA
s cb4.chrX              10823158 53 + 21540570 CAACTTTAAGACAA-------CTCTGAATATTTTCAAGTCACTGAACTCCACTTGGAGGT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2229195 56 -  4500979 CAAATTTGGTACTAGCgt-gtttttctacattttctggGTTTT---CTCAAGCTCAAAGC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     81128 46 -  1189296 CAAATT--GGAAGAGTTTCGTTCCTAtatatt--------------tttcgtttcaaaacgA--
i caeSp111.Scaffold626  I 1 I 370
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I

a score=-14246.000000
s ce10.chrX              5475753 223 + 17718866 TGAAAAAAGAGTAGCCCTGAGGTAAAAAGGAGAAGCTGACCACATAATTTCATGGTCCAAC-----------AAGCTCCTCCTGTTGCTAGGTAACGTCAAATTT------------GAATTCACAG-------TTTACCAAACTAG-------TCAAATAACTAGATTAAGAC-ATATTTAATGAGTATAGACATTTATGTTTCAGAAA---AAAATGTTTTT---------AAC-------CCACCTTACTAACA--AAATCGGAAAA-------TTCCGGAGATCC----------------------------------------
s cb4.chrX              10823211 306 + 21540570 TGAAAATATATTCAGCAATACTGAGCAATAAGGAAGT--CCA---ATTTTTATGGTCCATTTGTTTCTCATAGAGATTATTCTACTCCAGTGTTGC--TCTATTCTTAAAAATTGCAAGACTCacgttttcatattttttgaacccaGTTCTTCTAAAATTAACAAACTGTCAAGTTATTAACTTCTTATTAGTCTCTacaattctcaaa---aaagttttatttctcaaaaaatcttcaagacacgttttttttcaacttttcagacGAGCTTCACTTTTAAGGACCCAGTATTCAAAAAGTC---CCAAATTGATCC----------
i cb4.chrX              C 0 I 166
s caeRem4.Crem_Contig0   2229251 253 -  4500979 TTCTAGAGTAGTTCTCAAGACAGAAAACATATGAATT---------TTTTAATGCTCCAATGAGTTT-----aggattttcttctttcttcgttG-----TATTC------------GAACTAAC---------TTATTTGAACCGG-------TAAAATTAGT-----------TTATTAGCTTTTTTCAACTGTTAAGCTGTTTCAAATAGAAAGGGTGACc---------aacttcaatattttttttcctgCA--TGATCTGATGAAATT---TTCTGA----CCATTCTCAACAAAATCAAACCAACTGTATGGGCGGAATGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e caeSp111.Scaffold626     81174 370 -  1189296 I

a score=-1292.000000
s ce10.chrX              5475976 133 + 17718866 AAGTAAA----TTATTATAGTT------------------------------------TCAATAAAGTTTCAA------------------------------------CTTTTGAGT-------TTCTTGTCAATTTAGCACATTTTGATAAAA---------TTTAATG-TTTCTTCCGAAAACATACTTTTGGAACTAAATTTTAACAAAGTGTTTGAGGAGG
s caeRem4.Crem_Contig0   2229504 218 -  4500979 AAGTGAAGAATTTATTTCAGTTCTATGTTAAACTTTTATATATGCTGGACTTACTTCTTCAACAAGATCTCCAATACATTTGTTTTCCAATTATATGTTGTTGATTGCACTTTTGAGTCCTTGAGTACTTCTCTGTTAGGTTCAAATCAGTAAAAACTGGCCGCTCTgctgcttttttcagaaaaagta---ttCAAGTTGCATTTTGAACAA-----CAATGAGT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e cb4.chrX              10823517 166 + 21540570 I
e caeSp111.Scaffold626     81174 370 -  1189296 I

a score=-3290.000000
s ce10.chrX              5476109 68 + 17718866 TTTAACGTTTCAATCCGGAAACTAAAAACAAG----TCAGCTGTT------GGGGGTAAGTATAAATTGATTATTTTT-
s cb4.chrX              10823683 68 + 21540570 tttcacattttattc---------gtttCCAGATGTT--GTTGTCCTCAAAAACACTAATTATGtatttcattgttttt
i cb4.chrX              I 166 I 23
s caeRem4.Crem_Contig0   2229722 62 -  4500979 TCTCACACCAAAATG---------AAAACAGGGTCATCAGTTGTC----AGAACAATAATTG---ATCAGATAGCATT-
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e caeSp111.Scaffold626     81174 370 -  1189296 I

a score=-469.000000
s ce10.chrX              5476177 29 + 17718866 GTGATGCAA----GAAAACATGAGTGCAACTGA
s caeRem4.Crem_Contig0   2229784 29 -  4500979 GAGAACAGAAAGTGAAAACATGAG----Gtccc
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e cb4.chrX              10823751 23 + 21540570 I
e caeSp111.Scaffold626     81174 370 -  1189296 I

a score=611.000000
s ce10.chrX              5476206 3 + 17718866 GCT
s cb4.chrX              10823774 3 + 21540570 gct
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   2229813 3 -  4500979 act
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e caeSp111.Scaffold626     81174 370 -  1189296 I

a score=1666.000000
s ce10.chrX              5476209 20 + 17718866 TCTCTTCTTCTTCTAAA----------TTT
s cb4.chrX              10823777 30 + 21540570 tttctttctttcctacaaaattcagttttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2229816 20 -  4500979 tttttccgttttcttga----------TCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     81544 20 -  1189296 tcttttcctcttccgaA----------CCG
i caeSp111.Scaffold626  I 370 I 73
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I

a score=-7682.000000
s ce10.chrX              5476229  72 + 17718866 TACAT-----------------------------------------------------------TGAAAGT-------------------------------ATATTTAACTCAATATTTCTACATTGAATTAGATATTTCAGACAAAAGCTAGACTT----TCTG
s cb4.chrX              10823807 128 + 21540570 ctcGTAAACCTCATGGCTATT---TTTAGTCGCTCTAATCTTAATGACCGctatcattaatttttttaaac-------------------------------cctttcaaccgtttttttctggaaacgataaaattttttctgctatttttaGCCTT----ACTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2229836 152 -  4500979 CTCGT----------GTTATCTAGTTTGTTTGCATCAAACTT-CCATTCGATTTCATATGTTAGTCGAAACAACAAAGTAAAAAGTACCCcgataatttttatttttaaacttctTTCTGCTGCACTCTAT---GCTATTTCTGGAAGTTTTAATCTTCCCAACTA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I
e caeSp111.Scaffold626     81564  73 -  1189296 I

a score=-2573.000000
s ce10.chrX              5476301 13 + 17718866 -----------------TGTTTTAAATGAA
s cb4.chrX              10823935 24 + 21540570 TTATCAAATGCTCAT------CAAATTGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2229988 30 -  4500979 CTatcgctttttctttttttcctcattaAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     81637 13 -  1189296 -----------------CGTTTTCGGTGAA
i caeSp111.Scaffold626  I 73 C 0
e caePb3.Scfld02_0       3755689 972 +  4147112 I
e caeJap4.Scaffold18194   607203 1020 +   823664 I

a score=-8565.000000
s ce10.chrX              5476314 213 + 17718866 -----------------------AATTGAAGCTGAGTTAAAAG-------------------------TTTGAA-----------ATTTTTCA-----------GTCAATATTCCAACTTCCatttatttattattcc-aatttttc--------aatttaattataattttttCCAATTCAAATAGCAAAAA--AACGCATCTCTTGTTATCT--GTCGCTG-----------CC-AATGTTTC---CCTC-ATGTTTTAATGATTAGTCGG-GGTGGCTCTGTGTTGGCTCTCCGCACATGCCTGCCAGAA
s cb4.chrX              10823959 186 + 21540570 ------AATCAAAAGTAACCTGAACTTTGAGCCCTGTTGatat-------------------------tccaaa-----------ctttttga------------------------tgatgatgaatCTTTCTTTCG-ATT-------------GAAAAAACTCTCC-------CCCATCGCCTGTTA------------------GTTATCca-attcttctctttttgcCACC-AATGTTTC---TCTC-ATGTTTTAATGATTTGCCCTCGGTG--------------CTCGGCATCCACGGCCA--AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2230018 258 -  4500979 ------ACTATAAAATGAGCTATTTTTAGTACCTGATTGATATGGAAGTTGCTCTAATCGGATGCCAATTTAAACAATTATTGACCGTTTTGATTGAAGTTTGAGCTTGAAACCAATTGTTCTTCAATCTATCTCTCA-AAT-------------GAGacaatttt---------cgaatcaaatgataaaa---aatactTCG-TTgttatccc-atttttt-----------ct-catgtttc---tCTCGATGTATTAATGATTTGACTCCGGTGGCTC--ACTTGT--CTCCACACAAGTCGGCC--AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     81650 179 -  1189296 --------------------------------------------------------------------CTTGGG------------agtttga------------------------tttcttttgatctGTGTCTCCTACTCCcac--------aaatcgaaatttcgatt---catttcaattgataaaaaccAAGACTCGGCTTGTTATCCCTTCTTTTG-----------CCaaatgtttctcttctc-atgTTTTAATGATTTGTCGG-GGTGGCTC--ACTTGG--CTCCACACAAATCGGCC--AA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3756661 210 +  4147112 AATCGGAgtcaaaatcaaac---atttaCAACCGTTTTTCAGTGAAC---------------------TTTGGG--------TTTAGTTTTCA------------------------TGTCTATCTATCTGTTTCTCC-ACTTAcacttcaaatgaaaaaaaaat------------------ttgataaaa---aatgcTCTG-TTGTGATCCC-ACTTTTG-----------CC-AATGTTTC---TCTC-ATGTTTTAATGATTTGTCGG-GGTGGCTC--ACTTGG--CTCCACACAAGTCGGCC--AA
i caePb3.Scfld02_0      I 972 C 0
e caeJap4.Scaffold18194   607203 1020 +   823664 I

a score=48546.000000
s ce10.chrX              5476527 148 + 17718866 CAGATAAGAG----GTGATTGTAAGTCGGCCGTCGCGGGGG----CTCTTA----AAGCAACAACTAACGTCTGGCGCGTT----------TGAAAATGAGGACC----------GAGTGACCGGTCTATATGTTTTATTCAAATAAAACAATGGG----------------CCGCATAATCCGCATGTTTTG--TCC
s cb4.chrX              10824145 139 + 21540570 CAGATAAGAG----GTGATTGTAAGTTGTTGG----AAAAg----ctcttt----gaaaa------aatggcg------------------GGACAACT----------------TAGTGTCCGGTC--TATGTTTTAttcaaataga-gaaaaaggaagacaCCTTGACCATTCCATAATCTCAGTGTTTTCCGTCC
i cb4.chrX              C 0 I 45
s caeRem4.Crem_Contig0   2230276 141 -  4500979 CAGATAAGAG----GTGATTGTAAGTCGGCAA----AACGG----CTCTTT----GAGAAACAACTAGAGGca------------------agaaaacgaggagaa---------aaGTGACCGGTC--CAGGTTTTAtccaaataga-aaaaatg--aggcACC-------ATTCATAATCCTTGTGTTTTC--TCC
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626     81829 183 -  1189296 CAGATAAGAG----GTGATTGTAAGTCGGGCG----GGGGGAGACTTCTTTTGAGAAGAGACAACTAAAGACAAG-AAGTTGGTGGAGGGAGGAAAATGa-gcgaaaagaagaatgagtgACCGGTC--TatgttttattcaaataaaagaaaaagagatgcaCCTCTACC-ATGCATAATCCTGATGTTTCC--CCC
i caeSp111.Scaffold626  C 0 I 29
s caePb3.Scfld02_0       3756871 163 +  4147112 CAGATAAGAG----GTGATTGTAAGTCGGGCG----GGAGG----CTCTTT----GAGAGACAACTAAAGACAAG-AAGTT----------GGAAAATGAGGTGAGATTGAGAATGAGTGACCGGTC--TatgttttattcaaataaacgaaaaagagGGGCACCT---TC-ATGCATAATCCTCGTGTTTTC--TCC
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18194   608223 109 +   823664 CAGATAAAAGATTAGTGCTTGTAAATCGGCGG----CGGGC----TGTTTC----GAG---------------------------------TGAAAGT-----------------GAGTGACCGGTC------CTGTATTTAACTAAA---AGGAG----------------CCGCATAATCCTAGTGTCTTG--TCC
i caeJap4.Scaffold18194 I 1020 C 0

a score=60.000000
s ce10.chrX              5476675 15 + 17718866 TTCTTCTTCTTCTTG
s caeRem4.Crem_Contig0   2230423 15 -  4500979 tttctatttttctat
i caeRem4.Crem_Contig0  I 6 I 33
s caeSp111.Scaffold626     82041 15 -  1189296 TTCCGATTTTTCTTC
i caeSp111.Scaffold626  I 29 I 4
s caePb3.Scfld02_0       3757054 15 +  4147112 TTTCGACTTTTCCCT
i caePb3.Scfld02_0      I 20 I 4
s caeJap4.Scaffold18194   608332  4 +   823664 ---------GTCA--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10824284 45 + 21540570 I

a score=75598.000000
s ce10.chrX              5476690 489 + 17718866  
s cb4.chrX              10824329 533 + 21540570  
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0   2230471 583 -  4500979  
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold626     82060 513 -  1189296  
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3757073 535 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   608336 524 +   823664  
i caeJap4.Scaffold18194 C 0 I 318

a score=-10835.000000
s ce10.chrX              5477179 107 + 17718866 AATAGAGCCGACTTGTCATGCACATCATGCATATACATATATAATTTTCTCTTCCCTTCTTTCC-------TTCATTGTATCAAGTGTGTCATTTTGAAA-------GAAAAA----------------------ATCATTTT-
s cb4.chrX              10824862  75 + 21540570 AATAG-------CTATT--CCAATTCATGCACA---------------ATCgtttacttttttt-------tgcctCTG------Catacagaattttcg-------aaaa------------------------aaaacttc-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2231054 110 -  4500979 AATAG--TCAacctctc--tcttttcaatcacA---------------CTATTCCATATTTTGT-------TTCCGTCAATATATCAAACGGCATTTTCA-------AAGAGCTTGCTATCTATAGGTGTTTTGTATCACTTT-
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold626     82573 113 -  1189296 AATAG--CCAAACCCGC--TCACTTCATGCA--------------------TTCCGTACTTCCT-------CTCGCTCCACTTGACACTTTGTATTGGCAAGAGCCCCGACAGTCGATATCTAAAGGTGTTTTGTGTGACTTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3757608 120 +  4147112 AATAT--TCAAACCA-----CTCTTCATGCACA---------------CTCTTCCGTACTTCCCCTCTTCGCTCTCTCCACAGTCCATTTCATATTGGCA--TTTCTAAAATATTGATATCTATAGGTGTTTTCTATGACTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   608860 318 +   823664 I

a score=-2930.000000
s ce10.chrX              5477286 15 + 17718866 GAAAGG--TAAGAGTTG----
s cb4.chrX              10824937 14 + 21540570 -gaaac--cTTAAATGG----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     82686 20 -  1189296 -GAAAGACGCAGTACCGCTTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3757728 18 +  4147112 -AGAGG--TTTGTACCGCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   608860 318 +   823664 I
e caeRem4.Crem_Contig0   2231164 27 -  4500979 I

a score=1317.000000
s ce10.chrX              5477301 26 + 17718866 ----------CCAGTCTCAT----TAGTATAAAAT--GGTTG
s cb4.chrX              10824951 25 + 21540570 ---------------CTCATCGACTAAAGGGAAGC--GGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2231191 25 -  4500979 ----------CCAG-CTCAT----TAGTCGAAAAT--GGTTG
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold626     82706 30 -  1189296 AACGCACGCTTCAC-CTCAT----TAG-----AAT--AGTTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3757746 24 +  4147112 AACGCG---------CTCAT----TAG-----AATGAGGTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   608860 318 +   823664 I

a score=142756.000000
s ce10.chrX              5477327 165 + 17718866 ACTCATTTCCGTTT---CTAATGACACTTGAT---------------------CTCCAACACTGTGTCG-CATTTTCATCGTACTGATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTGCGGCAGCCAAAACCAGCACC---------CTTGC---TTTTCCGc-------tccttttccttctgcttctt--cttcttatt
s cb4.chrX              10824976 177 + 21540570 ACTCATTTCCGTTTCTACTAATGACACTTGAT---------------------CTCCAACACAGTGTCGCCATTTTCATCGTACCGATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTGGGGCAG-CAAAACCAGCACCCCCCTCGTTCTCCCTGCTTCTCCTCTATCGCTTAGTTCT-CGTCGACTTCTT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2231216 159 -  4500979 ACTCATTTCCGTTT---CTAATGACACTTGAT---------------------CTCCAACACAGTGTCG-CATTTTCATCGTACCGATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTGGGGCAG-CAAAACCAGCACCCC-------CTTTCTGCTTCTCCGC-------TCGTTGT-CTTCTACTTCTT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     82736 164 -  1189296 ACTCATTTCCGTTT---CTAATGACACTTGAT---------------------CTCCAACACAGTGTCG-CATTTTCATCGTACCAATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTGGGGCAG-CAAAACCAGCACCT--------CTTTCGCATTTTTCGT-------TCGTTTT-CCTcgattcctt--cttc---tt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3757770 161 +  4147112 ACTCATTTCCGTTT---CTAATGACACTTGAT---------------------CTCCAACACAGTGTCG-CATTTTCATCGTACCGATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTGGGGCAG-CAAAACCAGCACCC--------TTCTC---TTTTCCGA-------TAGTTTT-CGTCgacttctt--cgtc---tt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   609178 182 +   823664 ACTCATTTTC--TT---CCAATGACATTTGATCTCCGAGACGCTAACCTCCAACTCCAGCACTGTGTCG-CATTTTCGTCGTACCAATTGTTTGTCATGATAATATTTGTTGAGAAACTATTATCTTAGGTAGG-CAAAACCAGCGCTT--------CTCTC------TCTTT-------TCGTTAC-CTTCCACTGCTTGCATTTTTATT
i caeJap4.Scaffold18194 I 318 I 286

a score=49172.000000
s ce10.chrX              5477492 387 + 17718866  
s cb4.chrX              10825153 477 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2231375 378 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 137
s caeSp111.Scaffold626     82900 384 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3757931 434 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   609360 286 +   823664 I

a score=-11328.000000
s ce10.chrX              5477879  45 + 17718866 TTTTGTACGG-----------------------------TTATTTT--------------------------------------TGTGCAATATATGAGTCACTTTGCAAAC
s cb4.chrX              10825637  55 + 21540570 ------GTTG-------------GTATATCAGTATCATACCAGTTT--------------------------------------TGCGGTAAATATCAAGATCTTTCCAATC
i cb4.chrX              I 7 I 183
s caeSp111.Scaffold626     83284  27 -  1189296 TGTTTCACTG--------------------------------------------------------------------------GGTGCGAAGTTTCGAAA-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3758365 101 +  4147112 GGTTTCATGGTGTTGGTCAGAGCGAACACCCTTATCAGAGGAGTTGTTGATCTTTATTCAGTCAATTTATTACTTGGCAGGGAAGATACAAAGTATGAAAC-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   609360 286 +   823664 I
e caeRem4.Crem_Contig0   2231753 137 -  4500979 I

a score=-618.000000
s ce10.chrX              5477924 2 + 17718866 AT--
s caeSp111.Scaffold626     83311 4 -  1189296 ACTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3758466 2 +  4147112 AT--
i caePb3.Scfld02_0      C 0 I 254
e caeJap4.Scaffold18194   609360 286 +   823664 I
e cb4.chrX              10825692 183 + 21540570 I
e caeRem4.Crem_Contig0   2231753 137 -  4500979 I

a score=-416.000000
s ce10.chrX              5477926 102 + 17718866 TCTTTGATGCTGATATTTTTATCAGTAATAATAAAATCA------AGAAACTAAGGTATGGGTATATTTTAGACGTTTTGTGTTCCCATTTTAGTCATAAAATCCCAA
s caeSp111.Scaffold626     83315  81 -  1189296 TAGTTAGTG--GTTATTGACTCTAGTATTACTAAACTAACATGATAGGAATCAAGG-------AGATCAAAGACT------------------GTCATCAAGTCACAC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3758468 254 +  4147112 I
e caeJap4.Scaffold18194   609360 286 +   823664 I
e cb4.chrX              10825692 183 + 21540570 I
e caeRem4.Crem_Contig0   2231753 137 -  4500979 I

a score=-2650.000000
s ce10.chrX              5478028 48 + 17718866 AAGTACATAAAATCGCTACAGTCAAGGCGCACTAAAAAAACCTTTTTA
s caeRem4.Crem_Contig0   2231890 18 -  4500979 -----------------------AA-----ATGCAGCAAATC--TGCA
i caeRem4.Crem_Contig0  I 137 C 0
s caeSp111.Scaffold626     83396 27 -  1189296 ---------------CTATAAACAG-----ATTGAG-AGATCGTTTCA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3758468 254 +  4147112 I
e caeJap4.Scaffold18194   609360 286 +   823664 I
e cb4.chrX              10825692 183 + 21540570 I

a score=-3874.000000
s ce10.chrX              5478076 7 + 17718866 AA----AAAAT--
s caeRem4.Crem_Contig0   2231908 6 -  4500979 TATTCC-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83423 2 -  1189296 CA-----------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   609646 7 +   823664 ------aaaaaaa
i caeJap4.Scaffold18194 I 286 C 0
e caePb3.Scfld02_0       3758468 254 +  4147112 I
e cb4.chrX              10825692 183 + 21540570 I

a score=87880.000000
s ce10.chrX              5478083 280 + 17718866 AGAAAAAAATATGACTTTTTTAAT--------------------------------------TCCATATTTCGAAATAGTAGTAGAGTATTCG------CC-----------TCGCCACA--------------------ACTTTTTTGG-CGCA---------TTT----------------------------------GTTCCCGGCATGTTTTTGGTACAATAGACGACGTT------------------------C--------------------GCTATC---T------------TCTTCCCGCATGTCGTGACTAATGTCCCGTT------GGCTTGTACATGTTGAATATAATTTcacacacacacacacacacacacacaG--CGTGACGC-------------------ATAAGTTAGTGTTGTTTTTTC------TATGCT-----GGCCGGGTCTGTTCCACTTCTCATCTTGACCATTTAT
s cb4.chrX              10825875 387 + 21540570 -----------agaaacttc------------------------------------------atTGGATGTCCAAGATATAAG---GTGTTCC------TCCGTTTCTCTATTC-CGAAACGCTCTATTCACcacatttggtttttttag-cGTTCCCCTCAC-TTTTTCTCTCATACTCTTTCCCTCTCCATACTTTCCAATTCCTTACATGTTTTC-GTACAATAGATGTTCTTctcttgaagtttttttttctaccatCTCATCCAGACCCATACACTACcatcctctctctctctctcactttccCGCATGCCATGACTAATGTTCCGTT------GGCTTGTACATGTTGAATATAATTT--------------------CACACAGACCGTGACTCATCCGGGAAGAGTGAGAGAATAAGAcagtgttgttttttt------tgctgttctGATGTGTCCTCCTT-----------TTCTGACCACTCAT
i cb4.chrX              I 183 C 0
s caeRem4.Crem_Contig0   2231914 254 -  4500979 -----------TGtcacttt------------------------------------------ttctaatttcgaaaTACTAGT---GTGTTCG------CC-----------TC-CCACACAGGC---------------ACTTTTTTGG-CGCG-CTCTCAT-TT-----------------------------------GTTCCTTACATGTTTTC-GTACAATAGATGTTCTC------------------------TCTCCTTCA------------ACTATCCTCT------------TCTTCCCGCATGTCGTGACTAATGTCCCGTT------GGCTTGTACATGTTGAATATAATTT--------------------CACACTG--CGTGACTC-------------------ATAAGTTagtgttgttttttc------taagGT-----GGTGTCTTCCTTCCC--------TTTTGACCATTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83425 256 -  1189296 -----------TGTTTCTGT------------------------------------------TCTCCATGTCAAGATACTAAT---GTGTTCGCCTTCTCC-----------TC-CCGCACAAGC---------------ACTTTTTTGG-CGCG-CTCCCCCATTT----------------------------------GTTCCTTACATGTTTTC-GTACAATAGATGTTCTC------------------------T---------------------caatcctct------------tcttcccgCATGTCGTGACTAATGTCCCGTT------GGCTTGTACATGTTGAATATAATTT--------------------CACACAG--CGTGACTC-------------------ATAAGTTAGTGTTTTT-----------TACGGT-----GGTCTCTtcctttccctttttcatcttGACCATTCTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3758722 315 +  4147112 AGGACGGTGTCTGATTCTTTTAAGCAGTAGCCTTCTTCATTTCACATGTTCCGCTGTGTTCCTCCTCATGTCGAAATACTAGT---GTATTCG------CC-----------TC-CCGTACAAGC---------------ACTTTTTTGGACGCG-CTCCCAT-TTT----------------------------------GTTCCTTACATGTTTTC-GTACAATAGATGTTCTC------------------------C--------------------ACTATCCCTT------------TCTTCCCGCATGTCGTGACTAATGTCCCGTT------GGCTTGtacatgttgaatataattt--------------------CACACAG--CATGACTC-------------------ATAAGTtagtgttgtttttttttcatctacaGT-----GGTCTcgtccttttcctttttcatcttgACCATTCGT
i caePb3.Scfld02_0      I 254 I 118
s caeJap4.Scaffold18194   609653 226 +   823664 aaaagaaggcacgatgcttt------------------------------------------ttttt-tgctgaaacaGAAGG---GTGGTCG------CC-----------TC------GAGAC---------------ACTTTTTTGG-CGCG---------CAT----------------------------------GT----------CTTTT-GTACAATAGATGTTCTC------------------------C--------------------AC-GTCCTTT----------------------CGATGTGACTAACACCACGTCCCTATAGATCTGTACATGTTGAATATAATTT--------------------CACACAGG-TGTGAATC-------------------ACAACTC--------TTTCCA------CAAGGT-----CGACTCTTCCTCTACTTT-----TCTTGCTCACTTGT
i caeJap4.Scaffold18194 C 0 C 0

a score=1000.000000
s ce10.chrX              5478363 1 + 17718866 G
s cb4.chrX              10826262 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232168 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83681 1 -  1189296 G
i caeSp111.Scaffold626  C 0 I 242
s caeJap4.Scaffold18194   609879 1 +   823664 G
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3759037 118 +  4147112 I

a score=-8590.000000
s ce10.chrX              5478364 56 + 17718866 TTTCGACACTGTGATTTGTTTCAAGTCGACTTGTTCCTGTTTTTTGTTCAGTTCTT-
s cb4.chrX              10826263 26 + 21540570 TATCA-------------TTTCACG----------------GTCCCTCCAGTTTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232169 15 -  4500979 TACCA----------------------------------------CTACAGTTGT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   609880 51 +   823664 -----TCATGCTCTTTTCTTTTGGTGCGGGCTTTTCCTCTTCCATCTTCTATCCT-T
i caeJap4.Scaffold18194 C 0 I 137
e caePb3.Scfld02_0       3759037 118 +  4147112 I
e caeSp111.Scaffold626     83682 242 -  1189296 I

a score=-9564.000000
s ce10.chrX              5478420 191 + 17718866 TGGAAATCAAGTGGCTATTGAAATATATTTTTTGTGAACTCAAATTTGCAGACGTGTCTGTGACCATTAATTTCAAACTATACAATTTTATGGCATTATTTTCTAATAAAACCCCCATTTTGTTTAGATAAAATTGTTAGTGTTCTAATGAAACATACATTTTAGAGCGAAGATAATTTTAACTATTTAAC
s cb4.chrX              10826289  49 + 21540570 ------------------------------------------AATATGTGTAC---------------------GATCTGTATGGTCAG----------------------------------------------------------------------TTCTGGA---TCGGACGCTCCAGCTG------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232184  73 -  4500979 ------------------------------------------AACATGCAGAC-----TTTGTCTGCTGAGCT-GGTATATATGCTCTT----------------------------------------------------------------------TTTCAAAGTCTTGGCTATTTAGATTGTCTTAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3759037 118 +  4147112 I
e caeJap4.Scaffold18194   609931 137 +   823664 I
e caeSp111.Scaffold626     83682 242 -  1189296 I

a score=-6718.000000
s ce10.chrX              5478611 56 + 17718866 TTAAAGAGACGTGATGGGGTGGTAACAATTTAAAATTTCTGGCTTGTATATATTTT--
s cb4.chrX              10826338 26 + 21540570 ----------AAGATGGGCT----------------------CACAAgctcatttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232257 36 -  4500979 -TTTGGAGATAAGATGGATT---------------------ACAGATTTTCGTTCCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3759155 29 +  4147112 ---GTAAGGAAACGTGAGCT----------------------TCTATG--CATTTT--
i caePb3.Scfld02_0      I 118 I 254
e caeJap4.Scaffold18194   609931 137 +   823664 I
e caeSp111.Scaffold626     83682 242 -  1189296 I

a score=-11966.000000
s ce10.chrX              5478667 249 + 17718866 TGGCATCTGTGATAAAGACAAATTGTAGGAATATGTTAATTTAAATAAACTTAATCCAAAATTTTTGGAT--TTATTTTTCAGGA--CTCATTATGAAACCTTCCAGGGAGCCAAAACCCTCCGAACTTAATCTCCTTTATTTAAATTCAGAATTTTACAAAATATCCAAAGATAAAAATACCTAATAATAGTTTACTAATTTTTGAATTAGATGACAACCTTTC---------AAAACAATCGA-CTCCCCGC-----TCCTCCTAC
s cb4.chrX              10826364 149 + 21540570 agaaatctttGATCTA---------------------------------CCTG---------TTACCGTTTgctaatttttgata-gctcagCTTGAAG-----AAAGAAACCACG---------------------TTGAGAAAGCTAA-------CTAAAAAATC----------AGCAAGT-----Tagattgtttcattttt------------atctATT----------CATCTATACA-CATCCGTT-----TCTTTGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232293 173 -  4500979 GAAAGACTTTGAGAGA----------------------------------------------TTCCAGTT--CTATGTTTTAGCACCCCCAATCCCAAG-----CAGTAAAATAAG---------------------TAATGTTATTTGAGA----TCTAAACTATC----------ATCACCT-----TTtacttctactttttt--tttgacaccAATCCTTTTTCCGTGGCACACCAACACATCAACCATCTTCCGTCGTCGGAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3759184 254 +  4147112 I
e caeJap4.Scaffold18194   609931 137 +   823664 I
e caeSp111.Scaffold626     83682 242 -  1189296 I

a score=-2815.000000
s ce10.chrX              5478916 38 + 17718866 CAGGTCCCTCTCCGATG--GTGCGGTTTGTCGCCTCGCGT--
s cb4.chrX              10826513 39 + 21540570 GAGATTCTTCTGCGATT-CTTCCGTACCCTCCACCCACAC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232466 34 -  4500979 AGGGT-----TGCGGTTCCCTCCATTCCGTGCCTCCAT-C--
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   610068 33 +   823664 CGGGTCCGTCCTCGGTT---------CCGTCCGTCCGTGCGG
i caeJap4.Scaffold18194 I 137 C 0
e caePb3.Scfld02_0       3759184 254 +  4147112 I
e caeSp111.Scaffold626     83682 242 -  1189296 I

a score=35107.000000
s ce10.chrX              5478954 44 + 17718866 CTATAAT-AAAACCACCGGCG--GAGGTGG--TTGGTGTCCAATAAAC--G
s cb4.chrX              10826552 49 + 21540570 CTATAATAAAAACCATCGGCATAGCGGAGGTTTTGGTGTCCAATGAAC--G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232500 46 -  4500979 CTATAAT-AAAACCATCCGCATAGCGGGGG--TTGGTGTCCAATAAAC--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83924 46 -  1189296 CTGTAAT-AAAACCATCGGCATAGCGGGGG--TTGGTGTCCAATAAAC--G
i caeSp111.Scaffold626  I 242 C 0
s caePb3.Scfld02_0       3759438 48 +  4147112 CTATAAT-AAAACCATCGGCATTGCGGGGG--TTGGTGTCCAATAAACAGG
i caePb3.Scfld02_0      I 254 C 0
s caeJap4.Scaffold18194   610101 39 +   823664 CCATAAT-AAAACCATTG-------GGTGA--TGTCCGTCTGATGAAC--G
i caeJap4.Scaffold18194 C 0 I 10

a score=6336.000000
s ce10.chrX              5478998 21 + 17718866 --TTGAAGACCCCCACCGTT------------TAT
s cb4.chrX              10826601 34 + 21540570 CCAAAAAGA-CCCCTCTCTTCCTCACCTTACCTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232546 20 -  4500979 --GTGAAGA-CCCCACCGTT------------TAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83970 21 -  1189296 --GTGAGGGTCTTCACCGTT------------TAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3759486 21 +  4147112 --GTGAAGACCCCCACCGTT------------TAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   610140 10 +   823664 I

a score=57052.000000
s ce10.chrX              5479019 168 + 17718866 A-CCCAAACGCCCTTCTTTTTTACCTCTTCTT---------------CTACTCAAGCATATCTATCAGATCT---CTCACACACAGTCT-------TC-CCTT----CTG-GTAGATACTAATCTA-GAGT--AAGAT-GCGACCCG---CCC-GGAGGAAGACG-----------AGAGGAATATTTATATTTTTCC-----------CCCTCATCCAACCTACTGAAT
s cb4.chrX              10826635 182 + 21540570 A-CGCGAAC-----CCTTTTttacttcttcctcttccaccaccaccaccactcaAGCATATCTATCAGATCTTTGCCTTCTCTGTTTCGCCTCCAGTCACCTC----CAATATAGATACTTATCTTGGAGT--AAGAT-GCGACCCG---CCC-GGAATACAACAACG--------AGgataatttttgtatttttc------------cacATCTCAA-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232566 176 -  4500979 A-CTCAAACGCCCTTCTTTTTTACCTCTTCTT---------------CCACTCAAGCATATCTATCAGATCT---CCATTCCCCTCTCTCACTGAGTC-CCTC----CG--GTAGATACTAATCTAGGAGTAAAAGAT-GCGACCCG---CCC-GGAGGAGGAAGGCA--------AGGGGgatatt--tatttttc------------gtcTTCCAAAACT-ACTGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     83991 170 -  1189296 ACCCCAAACGCCCTTCTTTTTTACCTCTTCTT---------------CCACTCAAGCATATCTATCAGATCT---CCTTTTCT--------CAGTGTC-CCTCTCTGCCA-GTAGATACTAATCTA-GAGT--AAGATCGCGACCCG---CCC-GGAGGAAGACAA----------GGGggtatatt--tatttttg-------------cctTACGAAACCTAGTGAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3759507 171 +  4147112 A-CTCAAACGCATTTCTTTTTTACCTCTTCCA---------------CCACTCAAGCATATCTATCAGATCT---CTCCT-------------GTATT-CCTC----CAG-ATAGATACTTATCTA-GAGT--AAAAT-GTGACCCG---CCCGGGAGGAAGACAACAGAGATTGGAGAGggttatt--tatttttt------------cccttaCTAACCTGGGTGAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   610150 147 +   823664 A-CCTAAACGCCACTCTTTTTTAC-----------------------CTCCTCAAGCATATCTCTCCGATCT-----------------------GTA---------GCA-AAAGATACTTATCTA-GGGT--TAGAT-GCGACCGGTTACCC-GTA-------------------TTGgggatatt--tatttttgttccaCGGCCAACTTGACTCTAACCTACTGAAG
i caeJap4.Scaffold18194 I 10 I 126

a score=13875.000000
s ce10.chrX              5479187 114 + 17718866 CATACCAATA-GTTG---GTGGGAATTGCCGAACAAAAAAT--------AAACATATCCATGACTCGACAC------AAGTGAAATGCGAAACCTAGCG--TCTTCCA--------TCTTCTATGTACGGGATATCCTTCTA
s cb4.chrX              10826817 127 + 21540570 CCCACAAATC-GTAGAAGATTGGAGCCccc--aaaaaagatg-------aaaattatatg-----caaaattctgcgaattgaaattcgacaccccacaatttttttagttcggcttcttccttttttcggaatttcaacca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232742 122 -  4500979 CCTACCAATA-GTTGTTTGTGAAACAGACC--aaaaaaaaTGCAGGGAAAAAAGTATACGTGACCCAACATTCTCAGAATAGAAATTTGATACCAAATG-----------------CCATCTATGTATGAGaaattcaacca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     84161 113 -  1189296 CATACCAAAC-GTTATTtgttggag-------aaaaaaaatgcaaa---aaacgTATAGATGATTCGAAATTCCCATAATAGAAATTTGATACCAGATG-----------------CACTTGGCATATGAGaa-ttctccaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3759678 114 +  4147112 CATACCGAATAGTtgtttgtgaga--------aaaaaagatgcaaa---aaacGTATAGATGACTTGGCATTCACGATATAGAAATTTGATACTAGATG-----------------CCTATGGCATAGGAGagtttcttcca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   610297 126 +   823664 I

a score=129276.000000
s ce10.chrX              5479301 506 + 17718866  
s cb4.chrX              10826944 555 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2232864 512 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     84274 501 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3759792 503 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   610423 430 +   823664  
i caeJap4.Scaffold18194 I 126 I 48

a score=-10795.000000
s ce10.chrX              5479807 37 + 17718866 CA--------------------------CTAATCTCAATTGTTTGCCA-----------------------------CAGTTTTCTCC-------TAAC
s cb4.chrX              10827499 31 + 21540570 ----------------CAT---------TCATTTTCGGTTATTGG--------------------------------CGCCTTT-----------AAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2233376 97 -  4500979 AATTACCAGAAATCACCATAACAAGTTGTCAACTTTGGTTATTGGTTTTGTTGCGC--catttgttttctctcttcacGACTTTCCCCCTTCTACAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     84775 77 -  1189296 ATT------------CCTTCAATTCCT-CCAAGTTTGGTTATTGGTTTCATCGCGCGCctgttgttttct-------cttttcttccc--ccCACAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3760295 72 +  4147112 CTTAAATGTAATTTCCCTTGACCACCT-TCAACTTTGGTTATTGGTTTCATTGCGC--------------------------CTTCCCTGTCCACAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   610853 48 +   823664 I

a score=342949.000000
s ce10.chrX              5479844 705 + 17718866  
s cb4.chrX              10827530 762 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2233473 725 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     84852 755 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3760367 735 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   610901 791 +   823664  
i caeJap4.Scaffold18194 I 48 I 1124

a score=-16990.000000
s ce10.chrX              5480549 45 + 17718866 CAA------C---CTA-----GACTTGTTAC-----ACTTTGCGACTTGGGATGTGC----ATAATCC
s cb4.chrX              10828292 50 + 21540570 CAG-GAGGGG---GGAAAGTGGAAACATTGT-----ACT-------CCAAGAGAAAAATCTATGTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2234198 53 -  4500979 CGG-AGGGAATATGAAACATTGATACATAGT-----ACTTTG---ACTCAGTGTAAA----ATGTC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     85607 43 -  1189296 GTG-GTGGAA---CAA-----GAGACATTGTCGGGAAC----------GAAGGGGAT----ACAAC--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3761102 38 +  4147112 CCATGTGGAA---CAA-----GAATCATAGT-----ACT-------TTGAGCTGAAC----A------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   611692 1124 +   823664 I

a score=2099012.000000
s ce10.chrX              5480594 2816 + 17718866  
s cb4.chrX              10828342 2739 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2234251 2798 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold626     85650 2711 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3761140 2744 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   612816 2920 +   823664  
i caeJap4.Scaffold18194 I 1124 C 0

a score=-17561.000000
s ce10.chrX              5483410 69 + 17718866 GTG------------AAGTTATTAACT-ACTTTAAAAAAGAGAACATTTCTAAATAGT---ATGTGCAATATACTCATAATACCC
s cb4.chrX              10831081 35 + 21540570 gta------------aaatcgaaaaat---ttta-----------atttctcattattcca------------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     88361 32 -  1189296 ATATGggttc-----tattcaaaaaat-gtgttg--------------------tGTT---------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3763884 34 +  4147112 ---------------TATTCATCGAGTAGTTTTGAA---------GCttaacattttt---------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   615736 47 +   823664 -------Tttaaaagaaataataaaaacattttaataaaaatg--attttgtatTA-----------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2237049 37 -  4500979 I

a score=445502.000000
s ce10.chrX              5483479 616 + 17718866  
s cb4.chrX              10831116 607 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2237086 626 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold626     88393 609 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3763918 615 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   615783 624 +   823664  
i caeJap4.Scaffold18194 C 0 I 346

a score=-10562.000000
s ce10.chrX              5484095 227 + 17718866 TGAAATTGGATATTTTTTAGACAAATAATCGTTTCTTCAAGAAATA--TGTCTTCTTG------AAATTAATTAATATACAGTTTAATTTACCTTAATAATTAGA------------------------------CTACG-CC-------GTGTTGTGATACT-TTTTTTTAATCTGAGAA-AAGTGATCCTTTGA-AAAAACTCTTGATGTCATTTGCTTTA--TCCTGTT------TCCATCCCCATCTTTATTTGTATTTT----------------GTTTAGTACCCCTTCCCTAT
s cb4.chrX              10831723 202 + 21540570 C----------GCCGTTTAATTTGCCTCCTA-----------------TGTTGTCATACCAAGAAAATTAACCACCGTAC----CGATATATcttaataattgaa----------aaaattatttttcgttccatctagg-tttcaaaatgtgttgtgATATC-TGCT--------AAGAA---------------------------ATGTCATCTGCTTTAGCCCCCGTT-------TTTCATTCACTCTCCAGTAG-----------CCCCAAACAgcctttattttca--aaaagt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2237712 240 -  4500979 C--------AAATCGCCTAACTAGCAGCCAAGCTCCCCAACCACTCATCGTTGTCATA-AATGAGAATTAATCACCGGA------AATGCAT----ATAATCAAA----------TATTTTGGTCTAT-------CTAGG-TCCCCTTATGTGTTGTGATATC-TTTT--------GAGAA-TAACAAGCTCttgagagaaaattttgatgtcaTCTGCTTTA--TCCCGTT-----------ATCCACCCTCCATTGGAGTCTCTATCCCCCTAAATTCACTTTATCTTTATCCTAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     89002 215 -  1189296 C--------TTCTAACTTCGACAG------------TTATCCAGCCACCGTTGTCATA-TACGAGAATTATAAATC---------AAT-CAT----TTAAACTAA----------TATTTTGTTCAC--------CTAGGCTTCCAAAATGTGTTGTGATACC-TTTT-------AGAGGATAAGTAATCTCTGAGGAGAATTTACTGATGTCATTTGCTTTA--TCCCGTT---ACTACcttactttttctcatttattcCAT------------------TCAGCCttttttttATG-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3764533 244 +  4147112 A------------AGTCTAGGAAGCCGCT-------TCACTCTGCCATCGTTGTCATA-AATGAGAATTAATaatc---------aat-tac----aaaaatcaaaatattctgTTAACTTGTTCAt--------ctagg-tttcaaaatgtgttgtGATATCATTCT-------AGAGTA-ATCTAATCCCTAGATTGAAAATACTGATGTCATGTGCTTTA--TCCCGTTCTCCCTACCTTATTTTGTCCCATATATTCCATCTCTCCCACCAAA---ACTCAGCCTTTATTATATAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   616407 346 +   823664 I

a score=38792.000000
s ce10.chrX              5484322 35 + 17718866 TATGCATTAATTTACATGACCTTTCCAAGTTCTCA
s cb4.chrX              10831925 35 + 21540570 tatgcaTTATTTTACATGACCTTTCACTGTTCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2237952 35 -  4500979 TATGCATTAATTTACATGACCTTTCCATGTTCTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     89217 35 -  1189296 TATGCATTAATTTACATGACTGTTCCATGTTCTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3764777 35 +  4147112 TATGCATTAATTCACATGACTTTTCCAAGTTCTCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   616753 35 +   823664 TATGAATTAACTTTCATGACTTTTCCATGTTCTCA
i caeJap4.Scaffold18194 I 346 I 366

a score=-3696.000000
s ce10.chrX              5484357 17 + 17718866 --ATTCAAGAAACTCTACT
s cb4.chrX              10831960  5 + 21540570 --ATTgt------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2237987 15 -  4500979 --ATTCTTCGAA-TATTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     89252 18 -  1189296 ATATTTCTCAAA-TATCCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3764812 16 +  4147112 --ATTCTACAAA-TTGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   616788 366 +   823664 I

a score=40657.000000
s ce10.chrX              5484374 522 + 17718866  
s cb4.chrX              10831965 551 + 21540570  
i cb4.chrX              C 0 I 175
s caeRem4.Crem_Contig0   2238002 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     89270 516 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3764828 498 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   617154 618 +   823664  
i caeJap4.Scaffold18194 I 366 C 0

a score=2127.000000
s ce10.chrX              5484896 5 + 17718866 TTATT
s caeRem4.Crem_Contig0   2238489 3 -  4500979 --ACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     89786 5 -  1189296 TCGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3765326 5 +  4147112 TTATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   617772 5 +   823664 TCATT
i caeJap4.Scaffold18194 C 0 I 43819
e cb4.chrX              10832516 175 + 21540570 I

a score=-10335.000000
s ce10.chrX              5484901 56 + 17718866 GCATCTGCAAAACATACATGTGTTGAAGTAACAAGAAAAAACTTTATTTTCAGTAT--------------------
s caeRem4.Crem_Contig0   2238492 49 -  4500979 ATGAATAC-------TTCTGTGTtgtcaaaatggaaaaaaatcttCGTAACAAAAT--------------------
i caeRem4.Crem_Contig0  C 0 I 84
s caeSp111.Scaffold626     89791 56 -  1189296 CTACAT--------------------CGAAAAAGAGACGGATTTACATGGCAAGTCAGCTCAAACGCGCCcttcat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3765331 31 +  4147112 ATAAAT--------------------------AAATCCGCATT-------CAACATAATCCAGA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I

a score=-786.000000
s ce10.chrX              5484957 13 + 17718866 ATCAGGGTGTTCT
s caeSp111.Scaffold626     89847 11 -  1189296 -ttcgaatttca-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3765362  9 +  4147112 ----GAGTGTTAT
i caePb3.Scfld02_0      C 0 I 136
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I
e caeRem4.Crem_Contig0   2238541 84 -  4500979 I

a score=385.000000
s ce10.chrX              5484970 26 + 17718866 GAAAATGACTGCGGCAATTTGTCATT
s caeSp111.Scaffold626     89858 26 -  1189296 tcaACCCAACGCTGCTTTTTGTCACT
i caeSp111.Scaffold626  C 0 I 551
e caePb3.Scfld02_0       3765371 136 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I
e caeRem4.Crem_Contig0   2238541 84 -  4500979 I

a score=0.000000
s ce10.chrX              5484996 55 + 17718866 AAAAATATTCATTTTATTAGATCGCTGGAAAAATTCCGAAACAAAAGGATTTGAA
e caePb3.Scfld02_0       3765371 136 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I
e caeSp111.Scaffold626     89884 551 -  1189296 I
e caeRem4.Crem_Contig0   2238541 84 -  4500979 I

a score=-139.000000
s ce10.chrX              5485051 26 + 17718866 GTACTCTTCAGAA----TCCGTTTCGA-----AAT
s caeRem4.Crem_Contig0   2238625 35 -  4500979 ctactACTTAGAGACACTACGTCTCAAGGTTTGGT
i caeRem4.Crem_Contig0  I 84 C 0
e caePb3.Scfld02_0       3765371 136 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I
e caeSp111.Scaffold626     89884 551 -  1189296 I

a score=38.000000
s ce10.chrX              5485077 1 + 17718866 G
s caeRem4.Crem_Contig0   2238660 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3765507 1 +  4147112 G
i caePb3.Scfld02_0      I 136 C 0
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832516 175 + 21540570 I
e caeSp111.Scaffold626     89884 551 -  1189296 I

a score=70169.000000
s ce10.chrX              5485078  97 + 17718866 TGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCA--------ATCTTTTTTGCCTAATATATTTC-----------
s cb4.chrX              10832691  90 + 21540570 TGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGagca--------atctttttttct-------ttct-----------
i cb4.chrX              I 175 C 0
s caeRem4.Crem_Contig0   2238661  90 -  4500979 TGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGagca--------atcttttttgtt-------tttc-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7897211 109 - 33334924 TGCCTGTGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGCAagttttacattttttttaat-------tttctaactTATTTC
i caeSp111.Scaffold629  n 551 I 63325
s caePb3.Scfld02_0       3765508  91 +  4147112 TGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAgca--------atcttttttgtt-------ttttt----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-15177.000000
s ce10.chrX              5485175 58 + 17718866 TTCGACTGAAATA--------------TTGTTCCTGATATTTTATTAGTCTTTCAATTAACGAAAA-AAACAT--------------------------------------
s cb4.chrX              10832781 97 + 21540570 tttcttttaggtaaaccctcatttctaat-tttcaattcttttatTGAGTTCGA--TGCACGACTTGATACTTTTCGATTTCTCAGAAAT-----TAAAGGGGGC------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2238751 33 -  4500979 ttcattttcgagA----------------------------TTGTGGGATT----------------GTACCTTTCT----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3765599 93 +  4147112 tttgttgaaaatattccatctttttttttaccccCGCTGCTTCAGTAAGTTTGC-------------AAACGTTTGA-----TCAGGAGTGATGATAAACGTACCAaacat
i caePb3.Scfld02_0      C 0 I 43
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=461.000000
s ce10.chrX              5485233 18 + 17718866 GTATTTTAAACGCAAAAT
s cb4.chrX              10832878 18 + 21540570 GTCcgctaatttcaaaat
i cb4.chrX              C 0 I 274
e caePb3.Scfld02_0       3765692 43 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I
e caeRem4.Crem_Contig0   2238784  0 -  4500979 C

a score=254.000000
s ce10.chrX              5485251 20 + 17718866 AAGATTAGAATGattttaaa
s caeRem4.Crem_Contig0   2238784 14 -  4500979 AAGCTTAAG------TTAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3765692 43 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=-1175.000000
s ce10.chrX              5485271 17 + 17718866 atatc------------aataatatttta
s caeRem4.Crem_Contig0   2238798  7 -  4500979 ----------------------AGTTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3765735 29 +  4147112 TTGTCTGTCgctaatgaaaaaatgtttca
i caePb3.Scfld02_0      I 43 I 37
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=-569.000000
s ce10.chrX              5485288 22 + 17718866 attaCTGACTATGAGTTAAATT
s caeRem4.Crem_Contig0   2238805 11 -  4500979 ATTC---------AGTCAGA--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3765764 37 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=-4940.000000
s ce10.chrX              5485310  79 + 17718866 TGAGATTTTTCAACTAGACTATTTACAGTTGT-----------------GATATTTTCAAATCCCT------GTCCCACTTGGGA--TCTCAGTTTTTGCATCC-
s caeRem4.Crem_Contig0   2238816  56 -  4500979 -CAGATAGTCTTATTATAT-ATCG-------------------------TCTATATTCGCTTGTCT------GGCTTTCTAGAGC----------------TTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3765801 103 +  4147112 tcctattttttaattaaac-ACCAACATCTTCACCACCATGcccttttctttattttcaccTCTTTACTCAAATCCCTTCAGCGCCGAACCAATAGATTCGTTC-
i caePb3.Scfld02_0      I 37 T 204
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=-365.000000
s ce10.chrX              5485389 33 + 17718866 TTTCTCAAGTCCTTTGTGAAGAGTTCACAACGT
s caeRem4.Crem_Contig0   2238872 30 -  4500979 TTCAGCGGTCACTTCGAGTATATTTC-CAAC--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3765904 204 +  4147112 T
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I

a score=0.000000
s ce10.chrX              5485422 37 + 17718866 GCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATA
e caePb3.Scfld02_0       3765904 204 +  4147112 T
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e cb4.chrX              10832896 274 + 21540570 I
e caeSp111.Scaffold629   7897320 63325 - 33334924 I
e caeRem4.Crem_Contig0   2238902  0 -  4500979 C

a score=-4113.000000
s ce10.chrX              5485459 74 + 17718866 ATCTGAAGGTC--GTGAGTTCGAGCCTCACCGGGAGCAATTTTTTTTTTGAAGTTTTCCCAAGTAGC----------------ATAAG----TTGC
s cb4.chrX              10833170 92 + 21540570 ATCTTAAAAACGAGTGATTTTCGAACTATCCTCCAA-GAGAGTTTTCTTCCCG---ACCCAAACTTCTGGATcgattgatataaaatttAAGTTGT
i cb4.chrX              I 274 C 0
s caeRem4.Crem_Contig0   2238902 49 -  4500979 ---CAACAAAC--GCAGTTTT-------------------ACTTTTATTCCCT---GCTTACACGTC----------------ACATT----TTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   7960645 80 - 33334924 ATCTGAAGGTC--GTGAGTTCGAGCCTCACCGGGAGCaatcctttttttaaaa---ttccaaacGTA-------CCTAATATAATAAG----TTGC
i caeSp111.Scaffold629  I 63325 n 63325
e caePb3.Scfld02_0       3765904 204 +  4147112 T
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-324.000000
s ce10.chrX              5485533 17 + 17718866 CATGAAGAAAACTGtaa
s cb4.chrX              10833262 17 + 21540570 CGAAAAACTAATTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2238951 14 -  4500979 C---AATGTCACTCAAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3765904 204 +  4147112 T
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold629   7960725 63325 - 33334924 I

a score=-25461.000000
s ce10.chrX              5485550 158 + 17718866 -ttttaatttaat----------ttttaatttaactgtttaaattcatttt-----------------------ttaatt------------------------tGAGTCAAAGCTAGCAATTTATTTTATCTCACATTTTGTTAATTTGAAACACAGACTGGCTCGAATTTAAGAACATTTTTTT-ATTCTTTTGATCCTACT-TTGCA----------------------------GACGTTGT-------------------
s cb4.chrX              10833279 200 + 21540570 ATTATGGCTAGTAGATGTAAGCTGTCGAAatt--ctaattaattttttcttgttgaaaaacaataaactcCCAattattcaataaaaatttataaataaTCAATTATTTACAtgtaaaagttttattttctcttttttattcacaaattgaaa---aaaatgtttt-----------tatttttcc-gctTCGTTAATTGTGCCGTTAGA----------------------------GAT-TCCA-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2238965 112 -  4500979 TGTGTCACTTGAA----------------------TGATTCCTTTGTTCTT-----------------------TTGTTC------------------------CACGTTGAAGGCAAAGTTTTATGTTTTCACGTTC-TTCTCAGG------------------------------TATCATTCC-------TGAATTTCACCGTTCCAT---------------------------GATATCGA-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3765700 221 +  4147112 -ttttaattaaaaaatgtttgcagTCGGACTT--CCGGTTGTCTGTCgctaatgaaaaaatgtttcatacCA--TTTCCC------------------------caatagaaaaacaagttcttctttcctcctattttttaattaaacACCA---ACATCTTCAC-----------CACCATGcccttttctttattttcaccTCTTTACTCAAATCCCTTCAGCGCCGAACCAATAGAT-TCGTTCTTTTTGAACGACTTTGT
i caePb3.Scfld02_0      T 204 I 4
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold629   7960725 63325 - 33334924 I

a score=45613.000000
s ce10.chrX              5485708 87 + 17718866 TC-------AGTGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAGC---AATCTTTTTT
s cb4.chrX              10833479 84 + 21540570 ---------TG-GCTTCCGTAGCGCAGTGGGCATCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGagc---aatctttttt
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2239077 83 -  4500979 ---------TGTGCTTCTGTAACACAGTAGGCAGCGCGGCAGTTTCGTAATTTGAATGTCGTAAATTTGAGCTTCACAGGGAT-----ACCTTTTTC
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold629   8247900 90 - 33334924 TCGCC-------GCTTCCGTGGCGCAATAGGCAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGCCCACCCGGGagcgaaaatttttttg
i caeSp111.Scaffold629  n 63325 I 1
s caePb3.Scfld02_0       3765925 94 +  4147112 TCTTCCCAGTGTGCTTCCGTAGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACCGGGAgc---aatctttttt
i caePb3.Scfld02_0      I 4 I 613
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-3566.000000
s ce10.chrX              5485795 25 + 17718866 ATTTTATTGATA---TCTT----GATTTTA--AA
s cb4.chrX              10833566 23 + 21540570 tgtttttc-------ttttgctatgttcca----
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2239169 27 -  4500979 tttttttcagaa---ttttcaaaaatctca----
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold629   8247991 32 - 33334924 aatttcttggaaaatattttcatgatttcagA--
i caeSp111.Scaffold629  I 1 n 1
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-8008.000000
s ce10.chrX              5485820 107 + 17718866 ----------------TTTATGAATGTTTATAATTGTAGAATAGTTCCTCATTTTCTC---ATTTTTAATT---------------TA---TTTTTACATAGCAAAGTTACTTGTTTTACTCTTTTCTGCCTCA-----------TTAAATGTGT
s cb4.chrX              10833589 116 + 21540570 ----------------tttttctctgtcT-----------------CGCTATTCTTCCTGAACTTCTAGtgataaattaaaaaaaaat---attttctgaaaaaaaattcaaattttt---cgcatATGTTTCAATTATTCTGATTCAAGTAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2239196 106 -  4500979 -------ttgttaatttttttttctgtttgaaa-----------caCCCCGTTCGTTC---ATTTTCAGTA-------TAAGAAAATT---ATCTGATATTAAAACACTAGGCGCTTT-------TATGTTTCA-----------TCAAATGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     90435 107 -  1189296 taagTCATGGttgatatttttctgctttt----------------atttcattctctt---attt----------------gaaaatttgattattacGAGaggaaaacagatttttt--cctctcttgTCACA-----------AGAAACGTGT
i caeSp111.Scaffold626  I 551 I 279
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-12995.000000
s ce10.chrX              5485927 268 + 17718866 TTCATTGTTTTTATGTTCACGCT----------------TTAATTTTTCTGTAACAATAGTATGATATCGCTTACGGTTT---------------AAATAACT---------------TTAAAAGATT--TCAGTTCTACCATAGTACCATT---GAGATAAAATAA------------AGGGTAAAATAATTGAGCTAGGTCATGTCAGTGACCCCCTTTCATGCAATTTTTCGTGTGCGCGCACAAAACGCGTCAATAGGATGGTTGACGTCTTTTCCGTGTGAACGTGCGTGCTTTATGAACGTATTAAAGTTTATCGGATATTCTTA
s cb4.chrX              10833705 287 + 21540570 GTATTTCATTGTacattctcagtttttttttctatttttttctttttttttcgagaagacGATTGTATGTTGTATCACTTTTTTGCGTTAATGATTACAAACCCAAACATGTTTGGTCTcaaaaaatcggcaatttcTTCATTGTTAC-------GAAAATaactaaattatttttttcattctattcTCCAAACTTTAG----TGCTGATAA--------TATGGAGAATTAATATGAATCGAGCGAATTGCGCCAGTATTTGTGCTGACACATTTCTTGTGTGTTTG-ACGCGCTAATCGCGCAC------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2239302 203 -  4500979 --------------ATTATCAat-------------------gtttgatttcaaaaattgagcgGTTTGCCGTATAACGT-----------------CAAACT---------------------AATCAGttcttttctcaatgtttCTATCTGTGAAAAAACGTAA------------ATTTTAAGAAGAATGGGTGAT----TGTTAGCAA-----------------------------AAGCATATTATGCGCTTTCTTTTGCTGACGTCTTTGCAGTGTGTGT----GCGCTTTTTGAGTGCATCA--------CTGGTGTCCTTG
i caeRem4.Crem_Contig0  C 0 I 27
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold626     90542 279 -  1189296 I

a score=-270.000000
s ce10.chrX              5486195 45 + 17718866 ACTAGTTTCTCACAAATTTGTTTGCATTCCCAACTTGTATGACGG
s cb4.chrX              10833992 29 + 21540570 ----GTTCCTCAC--GTTCGAATACAATTATAGC----------G
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold626     90542 279 -  1189296 I
e caeRem4.Crem_Contig0   2239505 27 -  4500979 I

a score=-2444.000000
s ce10.chrX              5486240 191 + 17718866 TTCTTTATTTTTTATTAT----TCGTTTTTTTT--------TTTTTGGAAAA--------------TGAGACAGTTAATTTTATTCTATTGTAATGTTTGTTTACTGGTTTACTAACTGAATTTCTTAGTGAAAATAATGTTTAATAAAAAGTTAAAATGAATAATGAATATCTCAAAATAATATAGT--AGTTGTGTATATCTTCTTTGAATTCGTAA
s cb4.chrX              10834021 172 + 21540570 TTATTGATTTAATATCCACGTAtgtctttgttt--------tttctagaGAATCG------ACAAATGAAACAGTAA---TTAT--TATTG----ATTACTACATT------CAAGTTACGAattt------aaatgattttcaa---------tgaaaaaaagaaagttttcaTAAATTCCCGCAATAAAATACCTTTTTCCTGTCCT---TTATTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2239532 199 -  4500979 TTATTGATTCTTTATCTTcatatcactttttttgtaaactGCTTTTACAAAGCAGTATGTCACGTTTGAATCTTTAG--TTTAG--TATAGAAATACTTATATATT------CTAGATGAtgtttt----gcaaatttttttcaa---aaagtttgaatttaaaattgactttataaattccagatgtccaattGCGCCTATCAttttt---ttCGTAA
i caeRem4.Crem_Contig0  I 27 C 0
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeSp111.Scaffold626     90542 279 -  1189296 I

a score=-2272.000000
s ce10.chrX              5486431 16 + 17718866 ATACCTTCAAAAACAA---
s cb4.chrX              10834193 10 + 21540570 ------GTTTTAACTg---
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   2239731 10 -  4500979 ------ACAACAACTA---
i caeRem4.Crem_Contig0  C 0 I 72
s caeSp111.Scaffold626     90821 18 -  1189296 ataCC-ATCATAAAAATAA
i caeSp111.Scaffold626  I 279 C 0
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I

a score=-818.000000
s ce10.chrX              5486447 16 + 17718866 ATTTCCCAG-ATCAACC-
s cb4.chrX              10834212 16 + 21540570 -ttttgcagCGGTATCC-
i cb4.chrX              I 9 C 0
s caeSp111.Scaffold626     90839 16 -  1189296 -GTTTCCAG-GGTAAAAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3766019 613 +  4147112 I
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeRem4.Crem_Contig0   2239741 72 -  4500979 I

a score=726.000000
s ce10.chrX              5486463 2 + 17718866 AT
s cb4.chrX              10834228 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     90855 2 -  1189296 AT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3766632 2 +  4147112 ac
i caePb3.Scfld02_0      I 613 C 0
e caeJap4.Scaffold18194   617777 43819 +   823664 I
e caeRem4.Crem_Contig0   2239741 72 -  4500979 I

a score=1551.000000
s ce10.chrX              5486465 19 + 17718866 GGCAAAAATGAAAATGACA
s cb4.chrX              10834230 19 + 21540570 GGCGTCTGTACCACTGTCT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     90857 19 -  1189296 GGCGAGTAGGAAGTTGAAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3766634 19 +  4147112 gacaaaaaagaaacttaaC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   661596 19 +   823664 ggagaaaaagaaatTAACA
i caeJap4.Scaffold18194 I 43819 C 0
e caeRem4.Crem_Contig0   2239741 72 -  4500979 I

a score=55734.000000
s ce10.chrX              5486484 147 + 17718866 CAAGAGGAACTAGTGCAAGCATTTAATCAATACATGCCAAAACGACCGGTTTATCCTCCACTGG------TTCACGATGATGACGTGCTCGCACATTCCGCCACAGAGTCGGAAGGAAGTGACGAAGAA-----GAGGATG--------------------------------ATTTGAC-----------------GTAATGTTTT
s cb4.chrX              10834249 201 + 21540570 CAAGAAGAGCTGGTCTCTGCATTCAATCAGTACATGCCAAAGCGACCAGTCTACCCACCACTCG------TTGACGATGGAGAGAGCCTGGAGAATTCAGCAACCGAGTCAGAAGGAAGCGATGATGAGTGTGAGATGAAGTAAGTATTTATTTTGAGAACGAAAGGCAAACTGCCACAGGGAACCATGAACGTGCTGTAACTACTT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2239813 147 -  4500979 CAAGACGAGCTGGTGAATGCTTTCAACAAATACATGCCAAAAAGACCAATATACCCACCACTTG------TATACGACCAAGAGAGTTGTGACAACTCGAGTACTGAGTCGGAAGGTAGCGGTGACGAG-----GAAGAAG--------------------------------ACTATAG-----------------GTCAGTATTT
i caeRem4.Crem_Contig0  I 72 I 3
s caeSp111.Scaffold626     90876 147 -  1189296 CAAGAAGAGCTGATCAAAGCGTTTGATAAGTACATGCCAAAAAGACCAGTCTATCCACGTGTTGCCGtgttt---gaagaagaggaattgaACAATTCTTCAACTGAGTCTGAAGGCAGTGACAGCGAA-----GAGGAAG-----------------------------------Tgac-----------------gtgagttttt
i caeSp111.Scaffold626  C 0 I 53
s caePb3.Scfld02_0       3766653 153 +  4147112 CAGGAGGAGCTTGCCGAGGCATTTGGAAAGTTCATGCCAAAACGTCCAGTCTACCCACGTCTTGCGGTTTTTTGCGATCAAGAGGTCATGGAAAACGACGATACGGATTCGGATTTGAGCGACTGTGAG-----GAGGACG--------------------------------ATCCAAG-----------------GTAAAACTTG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   661615 147 +   823664 CAAGATGAGCTAGTTCGAGCTTTCAATCAGTATATGCCAAAACGACACGTGTTTCCTCCACTTG------TAGATGATGAAGACGATCTTACCAACTCTTCCACCGAGTCAGAAGGCAGCGACACAGAA-----GAGGACG--------------------------------ATCCATT-----------------Gtaagatttt
i caeJap4.Scaffold18194 C 0 I 1710

a score=-1383.000000
s ce10.chrX              5486631 12 + 17718866 ATTTAGCTCATA--
s cb4.chrX              10834453 12 + 21540570 GGGCAGCTCCTA--
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2239963 12 -  4500979 gtttaattttga--
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3766807 12 +  4147112 --GTTTTTCTGATA
i caePb3.Scfld02_0      I 1 I 830
e caeJap4.Scaffold18194   661762 1710 +   823664 I
e caeSp111.Scaffold626     91023 53 -  1189296 I

a score=546.000000
s ce10.chrX              5486643 2 + 17718866 AT
s cb4.chrX              10834465 2 + 21540570 AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2239975 2 -  4500979 at
i caeRem4.Crem_Contig0  C 0 I 1437
e caePb3.Scfld02_0       3766819 830 +  4147112 I
e caeJap4.Scaffold18194   661762 1710 +   823664 I
e caeSp111.Scaffold626     91023 53 -  1189296 I

a score=-5662.000000
s ce10.chrX              5486645 554 + 17718866  
s cb4.chrX              10834467 705 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3766819 830 +  4147112 I
e caeJap4.Scaffold18194   661762 1710 +   823664 I
e caeSp111.Scaffold626     91023  53 -  1189296 I
e caeRem4.Crem_Contig0   2239977 1437 -  4500979 I

a score=273.000000
s ce10.chrX              5487199 1 + 17718866 A
s cb4.chrX              10835172 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     91076 1 -  1189296 A
i caeSp111.Scaffold626  I 53 C 0
e caePb3.Scfld02_0       3766819 830 +  4147112 I
e caeJap4.Scaffold18194   661762 1710 +   823664 I
e caeRem4.Crem_Contig0   2239977 1437 -  4500979 I

a score=-1884.000000
s ce10.chrX              5487200 8 + 17718866 ACTTTATA-
s cb4.chrX              10835173 5 + 21540570 atatt----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     91077 9 -  1189296 atcttatat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3767649 8 +  4147112 acttcat-t
i caePb3.Scfld02_0      I 830 C 0
e caeJap4.Scaffold18194   661762 1710 +   823664 I
e caeRem4.Crem_Contig0   2239977 1437 -  4500979 I

a score=14032.000000
s ce10.chrX              5487208 159 + 17718866 TTTTCAGAAAGCGATTGAAAGTGACTTTGGCATTTTCAACAGACATGATGTCAGAATGCCGCACAGCCTGGGAAGACTCAAC---TTGTAAACCACCGATTCAGTATCTCGAGGACAATATTCAAAAAGATGTTGAATATGTATGGTTAAAATAT------C-ATAAAT
s cb4.chrX              10835178 160 + 21540570 tttccaggaagaaaatgaaagtcGCAATTACCCTCTCCGCTGTAATGACTCCAGAGTGTCAGAAATCATGGATGAGCGCTTC---TTGCAAACTTCCGAAAACTTATCTCGAGAATAATATTAAGACTGATCTGGAATTCGTAAGTTTTATCTAT------CCGTTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2241414 169 -  4500979 TTTTCAGCAAACGAATGACGGTTTCTATTTATTTCAACACTGAGATGTCACCGGAGTGTCTCAAAGCATGGAATCAAGCTCCCTTCTGCAAGCTTCCAGACGTGTATCTCTACGATAATATTCAGGTGGCTCTCAGATTGGTAAATTTGATGTTTAATGTACGATTATT
i caeRem4.Crem_Contig0  I 1437 C 0
s caeSp111.Scaffold626     91086 160 -  1189296 ttttcaggaagcGGGTGCGGTTACGATTAAGATTCACAGATACCATGTCACCGCCTTCTATGCAGTCGTTCATAGACTCCAA---ATGTAAAACGCCAAGCACATATCTCACAGACAACGTTCAATCGACACTGgagaaagtgagtttctcTTGC------CGGAAGAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3767657 154 +  4147112 tttccagaaaacgtcaaaaaatcTACATTGAAATCAAGGATGTGATGACACCAGATTGTGAACGGGTATGGAAAAACGCCCG---TTGCAAGCGACCAAGCCAGTATTTAGCGGATAATGTTCAAGGACCATTAGAAGTTGTAAGTTT------C------CAATAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   661762 1710 +   823664 I

a score=39629.000000
s ce10.chrX              5487367 123 + 17718866 --AAA-ATACCATATCATTTTTCGATTTT-CAGATACTCGAGAAACTGGTCAATCTGAAAATCAAGCCCAACAATCCAATTGAATGGCTTGGATACTGTCTTTTGAACATGAACATCAATGATCCTC
s cb4.chrX              10835338 118 + 21540570 --CCT-CTCTCAT-----TGATCAAATTT-CAGGTTCTCGCAAAACTAgtcaatttaaaaatgaaaccTGCAAATCCAATCGAATGGCTAGGATATGCTCTACTCAACCGCAAAATTATGAAACCGG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2241583 111 -  4500979 --CAT-ATT------------TTGGATTG-CAGGCTCTACGAAAACTTGTCAACTTGAAAGTGAAACCATCGAATCCAATTGAATGGCTTGGATACTGCTTGCTGAACATCAATGTGAGAGAAGAAA
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626     91246 119 -  1189296 --TAATATGTAGT-----TACTTTTGTTC-TAGgctctttcaaaaatggccaatctcaaaaacaagCCAAAGAACTCGCTTGAATGGCTAGGCTATTGCTTGCTGAACATGAACATCAACGACCCTC
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3767811 123 +  4147112 --TAG-ACTTGGTCGCA-TACCTATTTTCACAGGCTCTCGAGAAACTGGCCAATCTCAAAGTGAAACCAAAGAATCCAATCGAATGGCTCGGTTACTGCTTATATAACATGAACGTCAAAAATCCTC
i caePb3.Scfld02_0      C 0 I 1016
s caeJap4.Scaffold18194   663472 117 +   823664 aaaaa-atc---------aaatcacATTTGTAGGCGCTTGAAAAGCTGATCAACCTGACTGTAAAGCCGAAGGATCCAATTGATTGGCTCGGATATACACTGCTCAATATGCAGATCAACAAACATC
i caeJap4.Scaffold18194 I 1710 C 0

a score=-967.000000
s ce10.chrX              5487490 10 + 17718866 GAAAATCAAA-
s cb4.chrX              10835459 10 + 21540570 TAAAAACCGA-
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2241697 10 -  4500979 TACCGACAAA-
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626     91368 10 -  1189296 CATCAACTGA-
i caeSp111.Scaffold626  I 3 C 0
s caeJap4.Scaffold18194   663589 10 +   823664 -CTAAACCGAA
i caeJap4.Scaffold18194 C 0 I 740
e caePb3.Scfld02_0       3767934 1016 +  4147112 I

a score=4752.000000
s ce10.chrX              5487500 10 + 17718866 AGATCACAAA
s cb4.chrX              10835469 10 + 21540570 GGATCACAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2241707 10 -  4500979 CGATCacaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     91378 10 -  1189296 AGATCACAAA
i caeSp111.Scaffold626  C 0 I 644
e caePb3.Scfld02_0       3767934 1016 +  4147112 I
e caeJap4.Scaffold18194   663599 740 +   823664 I

a score=179.000000
s ce10.chrX              5487510 6 + 17718866 AATAAA
s cb4.chrX              10835479 6 + 21540570 GTGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2241717 6 -  4500979 atcaaa
i caeRem4.Crem_Contig0  C 0 I 504
e caePb3.Scfld02_0       3767934 1016 +  4147112 I
e caeJap4.Scaffold18194   663599 740 +   823664 I
e caeSp111.Scaffold626     91388 644 -  1189296 I

a score=821.000000
s ce10.chrX              5487516 69 + 17718866 CCA-TCGGAATTGTTGCGAGACTTTAAAATCGAAGCGCTTGTCAATATGGTATGGAATATGGAGGAAGGT
s cb4.chrX              10835485 68 + 21540570 CCAGTCGGAGGT-CAActcgatttcaaaattgaagccGACTTCAATCC-GTATTACATTTGGCGTGAGGT
i cb4.chrX              C 0 I 503
e caePb3.Scfld02_0       3767934 1016 +  4147112 I
e caeJap4.Scaffold18194   663599 740 +   823664 I
e caeSp111.Scaffold626     91388 644 -  1189296 I
e caeRem4.Crem_Contig0   2241723 504 -  4500979 I

a score=0.000000
s ce10.chrX              5487585 1178 + 17718866  
e caePb3.Scfld02_0       3767934 1016 +  4147112 I
e caeJap4.Scaffold18194   663599  740 +   823664 I
e cb4.chrX              10835553  503 + 21540570 I
e caeSp111.Scaffold626     91388  644 -  1189296 I
e caeRem4.Crem_Contig0   2241723  504 -  4500979 I

a score=1076.000000
s ce10.chrX              5488763 45 + 17718866 CTTTTTGTTTATATGCGAGGA--TGCGAAATCTTTTTTTTTTCAGGT
s caeJap4.Scaffold18194   664339 47 +   823664 ctttgtatttgtatttaaaaacttgataaaactgtattttttctgtt
i caeJap4.Scaffold18194 I 740 C 0
e caePb3.Scfld02_0       3767934 1016 +  4147112 I
e cb4.chrX              10835553 503 + 21540570 I
e caeSp111.Scaffold626     91388 644 -  1189296 I
e caeRem4.Crem_Contig0   2241723 504 -  4500979 I

a score=109.000000
s ce10.chrX              5488808 3 + 17718866 AGC
s caePb3.Scfld02_0       3768950 3 +  4147112 agt
i caePb3.Scfld02_0      I 1016 C 0
s caeJap4.Scaffold18194   664386 1 +   823664 --C
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10835553 503 + 21540570 I
e caeSp111.Scaffold626     91388 644 -  1189296 I
e caeRem4.Crem_Contig0   2241723 504 -  4500979 I

a score=-517.000000
s ce10.chrX              5488811 33 + 17718866 TCTTGTTGAAA--AAAAAC------TTAACGATGTTAATTT
s caeRem4.Crem_Contig0   2242227 35 -  4500979 tcatttcaaaa--aaaaacccctAGTGAACTTtgtga----
i caeRem4.Crem_Contig0  I 504 I 2
s caePb3.Scfld02_0       3768953 32 +  4147112 ttttttcgaaa--ggaaAT------TGAACTTTGTGAAGC-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   664387 27 +   823664 -TGTTTTGAAATCGAAAAc------ataaaaagg-------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10835553 503 + 21540570 I
e caeSp111.Scaffold626     91388 644 -  1189296 I

a score=627.000000
s ce10.chrX              5488844 2 + 17718866 GA
s cb4.chrX              10836056 2 + 21540570 ga
i cb4.chrX              I 503 C 0
s caeRem4.Crem_Contig0   2242264 2 -  4500979 ag
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3768985 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   664414 2 +   823664 aa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     91388 644 -  1189296 I

a score=151268.000000
s ce10.chrX              5488846 384 + 17718866 AAAGTGAAATCAC------GGTTTGGT-TAATGAGTGTCTTCC-----TCCGCTGCTACCTGTCGGGAA----AAGAAGAAAGACCGATAACCTACGATTCTTCAGGATCGCCC--------------------AGAGAAGTCAT-CGATGACCGTGCCTTGATGCTTATCG-TGCTCCAAAGGCG----------CTGTCGCTTTCAC-------------TTGAC------TCTTATAGCGTCCTCGTTTTTCATTCT-ACC-TGCACTTTCAC--CTCATGCGCGCCGCCTCGGATGTTAGGTTT-TAGATTTTTCCAGATAGCCACGGT-C-----TCACTCTCTGACAAAAGTGC--A---CGGAGGTCGGGGAAGGTTTGCACGGAGAGGTAA-----ATGAAAGGAAAACTGCG----------------GCGGCGGGGAGAAAA---------TTAGTGAAAT-TGAATGGGACTGACGAGTACG--ACAAA
s cb4.chrX              10836058 431 + 21540570 aaagtgaaaatgc-----GGGTTAGTG-TAATGAGTGGCTATTTCTTTTTCACCGCTACCTGTCGG-------AAAA--AGACACCGATAGCCAACGATTATTCCGGATTGCCCCTACACCggtaaaagaagaagaagaagacgtccaTTGACCGCGAATCGATGCTTATCGCGGCTCTGAGAGCGAAATTGTCG-CTGCCGCTTTCATCCTCTCACTCTCGTCAACTCTTGCTTTCAAATTGGCCCCGTTTTTCAATGTAATC-TGCCCTTTCAC--CCCCACCGATTC-------ATATCAGATTT-TAA--------AGATACGGGAGGTAC-GCGGGCGGTGTCTgacaaaagttcaga----aaaggTCGGAGAA-TTTTGCAAGCAAGCGAGA-----ATGAAAGTAAAATTCAGACCTGCGTGA------GTGACAGACAAACGG----------------AAT-TAGATGGTACTGTTAAGTTAGATGTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2242266 380 -  4500979 aaattgaaagtgC-----GGGTTTGGGTTAATGAGCG----CTTCCTTTTTACCGCTACCTGtcgggaaatgaaaaa--gaagaccgATAAACGACAATTATTCCGGATCGCCC--------------------GCAGAAGACAT-TGCTGACCGTGACTTGATTCTTATCG-ggctctgaaaacgaatttgtCG-TTGTCGCTTTCAT-------------TTAAA----ACTCTCAAATTGCCCTCGTTTTTCAATGTAACC-TGCCCTTTCAC--CC------AGCC-------ATGCCAGATTT-TAA--------AGATATGGGCGGTAC-----GCGGTGTCTGACAAAAGTAC--A----ATTTGTCGGAAAA-gtttgcaa--aaagaaaa-----atgaaag-gaatcTGAGATGGTAGCGA------TTGGAAATAAGAGAG----------------AACATAGATGGAACTGACGAGTACG--GCCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     92032 403 -  1189296 aaagtgaaaatgc-----GGGTTAGGT-TAATGAGTGCCTTCTATTTCTTCACCGCTACCTGtcgcaaa----aaga--aaagaccGATAAACGTCGATTATTCCGGATCGCCCC-------------------ACAGACGAAAT-TGCTGACCGTGCCTTGATGCTTATCG-GGCTCTGAAAACGAATTTGTCGCCTGTCACTTTCAT-------------CCAAC------TCTCAAGCTGGCCCCGTTTTTCAATATGACCGTGCCCTTTCACCTCC------GACC-------ATGCCCGATTT-CAA--------AGATATGGGCGATTC-GC--GCACTGTCTGACAAAAGTGC--AGACCGTACGCCCGGAAA-ATTTGCAAGGAAGGAAATGAAGGATGAAAGTAAGATGAAGAAAGTCGCAA------GTCGGCAAGAGAAAA--------GATAGTGAAAT-TAGATGGAACTGGGAAGTACG--GCGAT
i caeSp111.Scaffold626  I 644 C 0
s caePb3.Scfld02_0       3768987 380 +  4147112 -AAGGGAAAATGC-----GGGTTAGGT-TGATGAGCGTCTTCT-----TTCAATGCTACCTgtcggaaa----aaga--aaagagcgaTAAACGTCGATTATTCCGGATCGCCCC-------------------ACAGAAGACAT-TACTGACCGTGCCTTGATGCTTATCG-TGCTCTGAAAACGAATTTGTCG-CTGTCGCTTTCAT-------------CTCAA-------CTCAAATTGGCCCCGTTTTTCAATGTAATTCTGCCCTTTCAC--CC------AACC-------ATGCCTGATTT-TAA--------AGATACGAACTGTGCGGC--GCACTGTCTGACAAAAGTGC--A--------ACGCAGACA-Atttacaagaaa-----------atgaaagtaaaATTCAGACCGGCG---------GcccgaaaaagagaaaaataagtgAGAGTGAAAT-CGAATGGAACTGAGGAGTACC--GCGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   664416 387 +   823664 gaagtgaAAATGCGGGCCGGGTGAGGT-AAGCGAGTGCCACTCACTCTTCCAC-----CCTTTTCGGAA----AAGA--AGAGACCGATAAA-GACGACCATTCCGGATCGGCGC-------------------AGAGACGTT-T-TGCTGACCGTGCCCTGATGCTTATCG-TGCTCTGAAAACGATTTTGTCG-TTGTCCCTTTCAC-------------C--GC------TCTCAAATCGACCCCGTTTTTCAATGTAATC-TGCCCTTTCGG--AC------GGCC----ATGATGTACGATTTCCCG--------AGATATGCGCGAGGC-----AAAATGTCTGACAAAAGTGC--A----AGTTGTC--GTCA-GTTTGTAGCGGGAAAAGA-----GTCGGCG-AAATCGAAAGGATTCGCGACTCTCCGTGCGGCGCCGACAA------------GTGAAAT-CGGATGGAACTGACGAGTACG--ATGAA
i caeJap4.Scaffold18194 C 0 I 1098

a score=14372.000000
s ce10.chrX              5489230 37 + 17718866 TGCGGAGAAGTGCACTTTGAGAACATAAGATCGGAAA
s cb4.chrX              10836489 32 + 21540570 A-----GAAATGCATGGGTAGAACATAAGACCAAGAa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2242646 32 -  4500979 T-----GAGGTACACGGTCAGAACAGAAGATCGGAAA
i caeRem4.Crem_Contig0  C 0 I 259
s caeSp111.Scaffold626     92435 32 -  1189296 T-----TAGGTACATTGTCTGACCATAAGATCGAGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3769367 32 +  4147112 T-----GAGGTACACGGTCAGAACATAAGATCGGGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I

a score=546.000000
s ce10.chrX              5489267 1 + 17718866 T
s cb4.chrX              10836521 1 + 21540570 t
i cb4.chrX              C 0 I 329
s caeSp111.Scaffold626     92467 1 -  1189296 T
i caeSp111.Scaffold626  C 0 I 142
s caePb3.Scfld02_0       3769399 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 195
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e caeRem4.Crem_Contig0   2242678 259 -  4500979 I

a score=0.000000
s ce10.chrX              5489268 926 + 17718866  
e caePb3.Scfld02_0       3769400 195 +  4147112 I
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e cb4.chrX              10836522 329 + 21540570 I
e caeSp111.Scaffold626     92468 142 -  1189296 I
e caeRem4.Crem_Contig0   2242678 259 -  4500979 I

a score=627.000000
s ce10.chrX              5490194 28 + 17718866 AATGCACTTTGAACATTG---CATGGTTATA
s caeSp111.Scaffold626     92610 31 -  1189296 AATGCACTTGGAAAATCGGAACAAGCTGCCA
i caeSp111.Scaffold626  I 142 C 0
e caePb3.Scfld02_0       3769400 195 +  4147112 I
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e cb4.chrX              10836522 329 + 21540570 I
e caeRem4.Crem_Contig0   2242678 259 -  4500979 I

a score=161.000000
s ce10.chrX              5490222 14 + 17718866 CATTTCACTACGCC
s caeSp111.Scaffold626     92641 14 -  1189296 TCTTGCGCGATAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3769595 14 +  4147112 CATCTGACGATAAG
i caePb3.Scfld02_0      I 195 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e cb4.chrX              10836522 329 + 21540570 I
e caeRem4.Crem_Contig0   2242678 259 -  4500979 I

a score=1203.000000
s ce10.chrX              5490236 4 + 17718866 TCAT
s cb4.chrX              10836851 4 + 21540570 tcaa
i cb4.chrX              I 329 C 0
s caeSp111.Scaffold626     92655 4 -  1189296 TCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3769609 4 +  4147112 TTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e caeRem4.Crem_Contig0   2242678 259 -  4500979 I

a score=97458.000000
s ce10.chrX              5490240 313 + 17718866 AAATCGTTTATAGCTTTGCCGC--AAATAACT---------------------GTGTTTTTCTCTGTCGAACGCATGCTTACTGC-TATTTATCAGATCGAAAGATCGCC--------ATTCAATTGCCGAGCCTGTCTTTTCTCCTGCTTCTCAATTATCCTCAATCCTCGCGGAGTA--CGCAGAC-ACAAACTGGAATTCGTTCCGAGGCACGACAGGCC----AGGTGAGTGTAGATTGATGAAAA--CGTCAA--ACGATTTTGCGTTTAGATTGCATACAACTGCTGAAAAATCAAACTCCGCAGA--------AAGGAAATAACGAGTCCGGC--TAGTTGCATCGGAATGTGTGATTC
s cb4.chrX              10836855 330 + 21540570 aaatcgtttaTAGTTTTGCCGACGAAATAATA----GGAATTTGCTTG--------CGTGTGTCTGTTGAACGCTTGCT---TGCAATTTTATCAGATCCAAAGATcgtctttttctctttctcttgccgagcttctccttcttctcatttt---------------ttcctggGCAAATTAAGCGTC-ACAAACTGGAATCTCAACCGCCGCACAC--ATTCATGTAGGTGAATGTagattgatgaaaaattgtcCA---CGATCTGGGAGGTAGATTGCCAGCAgatgctgaaaaatcaaactcCGCAGAGGAGGGGGAGAGGAATAACGAGTCCATCAAGTGTCGAATCGGCTAGTTCGGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2242937 308 -  4500979 AAACCGTTTATAGTTTTGCCGC--AAATTAAA----AGAGCGTGCGTGTGAATAAATGTATGTCCGTTGAACGCATGCC---TGC-ATTTTATCAGATCCAGAGATCGTC---------TTCATTTGCCGAGCTAGTcctccatttcatttt----------ctgcaTTCTTGGAAAA---AGACGGC-ATAAACTGGAATCCTATTTGACGCACAA----------AGGTGGATGTAGATTGATGAAAA--TGTCCA---TGATCTGCCGTTTAGATTGCGTggatttgctgaaaaatcaaactcCGAAGAG--------AAACACTAACGAGTCCACC--TTGGTGGATTGGAATGTGCCGTTC
i caeRem4.Crem_Contig0  I 259 I 775
s caeSp111.Scaffold626     92659 285 -  1189296 AAATCGTTTATAGTTTTGCCGC-AAAACAGTGTGAAATAATGAGcgtgtctgtgtgtgtgtctctTTTGAACGCATGCT---TCC-TTTTTATCAGATCCAGAGATCGTC---------TTCTTTTGGCGAGCTT-----------------------------GCTTCTCAGGAATTA--AGACGACACGAAACTGGAATC-----CGTCGCACA-----------AGGTGAATGTAGATTGATGGAAA--CGTCCA---TGATCTCACGTCCAGATTGCATGCACtggctgaaaaatcaaactcCGAAGAG-------AAGCGAATAA------CGGC--ATTAAGGATTGGAATTGGAGattc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3769613 307 +  4147112 AAATCGTTTATAGCTTTGCCGC--AAATAATG----AGGATGAGTGAGTgaatgtgtgtgtgtctgttgCACGCATGCT---TGC-TTTTTATCAGATCCAAAGATCGCC---------TTCTTTTGCCGAGcttgtctttttgttttatcc----------tCGCTTTTCTAGGAACG--AAACGAC-CTAAACTGGAATC-----CGTCGCACAT----------AGGTGAATGTAGATTGATGAAAA--CGTACATGGTGATCTGACGTTGAGATTGCATGCattagctgaaaaatcaaactccGTAGA--------AGATGAAGAACGAGTCCGGC--AGGTTGGAATGGAATATGGGATTc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I

a score=2115.000000
s ce10.chrX              5490553 19 + 17718866 GTAACGGACAC----GCTTTTTC
s cb4.chrX              10837185 21 + 21540570 TTTATGAACATTCGATCTTTC--
i cb4.chrX              C 0 I 26
s caeSp111.Scaffold626     92944 23 -  1189296 tttttgatcatttggactttttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3769920 23 +  4147112 ttcttgaacatttgaactttttc
i caePb3.Scfld02_0      C 0 I 204
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e caeRem4.Crem_Contig0   2243245 775 -  4500979 I

a score=-10831.000000
s ce10.chrX              5490572 125 + 17718866 CCGGTTTTTTCGGTT------------TCATGTATACGCCTAGTTTTTTG----------AAGCAAGTTGTCAGATATGTATTGCACTT---------TTTTAAGT---------------------ATAGA-----------------AATTTCCAAACAG--------TCTGATTT--GGGTTAAT-TGAGCA-----------GTTTCGGACG-------
s cb4.chrX              10837232 222 + 21540570 ctgatactttcagaaaacaacaaaaaatcataagTAAACTCGGAATTTTACTTCTACAGTGATGAAGCTAAAAAAGACAACTAAAACTTGATGTTAAGTTAAAGGTTTATTTTGTTTCTGCATCATGATAGACTATGCAAACTAAAGAGAAATGTCAATTAACTATTTATCTGGAATTCAATGTCAAT-TAACTACTTATCTGGAATTCTATAATGTATACCG
i cb4.chrX              I 26 C 0
s caeSp111.Scaffold626     92967 124 -  1189296 --------tctagaa---------------------------gagtTTTGGTTTTCCG--GAAGATGTCAGTCATTTTGAACAAGACTCATTATCA--TTAAAAGTTT-------------------ATAGtcc---------------aattttcaataagATCAAAATCTTGATTT--ATGAAAACATAACTA-----------------AACG-------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3769943 204 +  4147112 I
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e caeRem4.Crem_Contig0   2243245 775 -  4500979 I

a score=-28379.000000
s ce10.chrX              5490697 162 + 17718866 -------------AAAAT-----ACTTTAAGA--AGACCATTAAAAAAAAA----CTGAATTTAACTG----------CTCTAACGC----AATAATGTTTGTT--TCAGATGCAATATTCACATTTTTGCAGTTTTCAAATA--------------TTTGTAAAAATTTCTTTAAGATACCTTATCATTTCT-----------------------AGGTA-------------------AAACGACAGAATCTG----AAG
s cb4.chrX              10837454 234 + 21540570 -------------TAAAT-----GCTCCAATAGGAGCCCCCGATATGCGtacattttgagctgaattatctcagttccttcaaatga----tataaaaatttgtcaactgacaaaatgttagcattttcacaaaaatcatttCATCAAATAGCac--gtttttgacattttctgaTGGAACCGACATAATTGAACTTAAAATAAACGTATAAGACGAGGTTCTATTGAAACGTTGAAAGAAACGTGGaaaatctg----gag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     93091 166 -  1189296 -------AGAGGCTCAAT----------------AGA----AACGAATGAAGTAACTGATCT-----------GCTCATTTAAATAC----TACGAGGCTTTTC------ATCAAGAGTTTTTAATTGAACCAAAAGCAAGAAAAGCACT-------CTTTTATATTATATTCCACGGTACATCATCAATTGA--------------------AAGAGGCTCC-----------------ACcttgaatattcag----aag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3770147 201 +  4147112 AAAATACTGGGATTAAATTATAATTTTGGATGGCAGACCACAAAACATGAAGTTCTTGGTATTGAGAG----AGTTCAGTCTAAGCCAACATACTGAactgaat------attca---ttttgtatggaatggaaaacaatacataaattaatgaaattgttaaaaactttttctcgaaacctT-------------------------------GAAGCTAT-----------------TACCTATCAAGCCAGAtgtatg
i caePb3.Scfld02_0      I 204 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I
e caeRem4.Crem_Contig0   2243245 775 -  4500979 I

a score=-12689.000000
s ce10.chrX              5490859  77 + 17718866 AAAAAA--CC----TTTTT----------TT----TTTGAA---------AAT--------------------------------AAAAGTAAATCGAATACAATAATAGGCCTCCTCCTGGAAAAATCGA--AATGCGG-
s cb4.chrX              10837688  95 + 21540570 aaaaaa--ca----ttttcaatcaG--AATT----CCTGCAACATAGCAGAAA--------------------------------ACAAgcagattcgaaaaattcaccgtaag-atgaaaaaaaaaccgaagaaaTCCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2244020  78 -  4500979 aaagaattct----ttttcaat-------tt----tatgcaA--------AAC--------------------------------ACGAGCAGATCGCAAAAATACACCGTTag-----agaaaaaaccga--aattccA-
i caeRem4.Crem_Contig0  I 775 C 0
s caeSp111.Scaffold626     93257 105 -  1189296 aaaata--tt----tctcCATCAAAATACTT----CTTGAA---------AACTACTCCAAAACAAATCGTATGTATTCT-----ATGAGCAAATAGTGTAGAATCACGGT---------AAGAAAATCGG--AATGCCA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3770348 122 +  4147112 aaaata--tgaaaatttacaGCCAATCTCTTCAGACCTGGAGCTTTG---AACTCGTTACAATCATACCTGACTTTTTCTGAAGCACGAGCATAAAGTAtgaatttagg------------aaaaaaccga--aatacGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   664803 1098 +   823664 I

a score=57559.000000
s ce10.chrX              5490936 75 + 17718866 TATCCACCACTCAATC--TTCAAGCTATATTACATTCCTGTTTCTCACTGCCATTGCGCGACTAGAACACAGAGTAC
s cb4.chrX              10837783 71 + 21540570 TATCCAACGGTCAATC--TTTAAGCTATATAACATTCCTGTT----TCTGCCATTGCGCGACTACAACACATAATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2244098 75 -  4500979 TATCCAAGTTTCCATC--TTCAAGCTATATTACATTCCTGTTTCTGTCTGCCATGACGTGACTAGAACACATAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     93362 75 -  1189296 TATCCTGCATTCGATC--TTCAAAATATATTACATTCCTGTTTCTGTCTGCCAAAGCGCGACTAGAACACAGAATAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3770470 75 +  4147112 TATCCGACATTCCATC--TTCAGGATATAATACATTCCTGTTTCTGTCTGCCATTGCGCGACTAGAACACATAATAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   665901 76 +   823664 TATCTGCCATCTGATCGTGTCACGCTTCATT-CATTCCAGTTTCTGCCGTCTGTAATATGACTAGAACACAAAGTAC
i caeJap4.Scaffold18194 I 1098 I 414

a score=1863.000000
s ce10.chrX              5491011 4 + 17718866 GACA
s cb4.chrX              10837854 4 + 21540570 ATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2244173 4 -  4500979 ACCA
i caeRem4.Crem_Contig0  C 0 I 444
s caeSp111.Scaffold626     93437 4 -  1189296 AACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3770545 4 +  4147112 AACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   665977 414 +   823664 I

a score=-894.000000
s ce10.chrX              5491015 11 + 17718866 CGTTGAATAAA-
s cb4.chrX              10837858 11 + 21540570 -AACGACAGGAA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     93441 10 -  1189296 -CTTGAAAAGA-
i caeSp111.Scaffold626  C 0 I 363
s caePb3.Scfld02_0       3770549 10 +  4147112 -CCTGAAAGAC-
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18194   665977 414 +   823664 I
e caeRem4.Crem_Contig0   2244177 444 -  4500979 I

a score=-629.000000
s ce10.chrX              5491026 65 + 17718866 --------------GGATATCCCAGAGTTGTGCAGACAAGA-----TTTTGAACAAAACGAAGAAAAAATTGAAAATTTTGAAA
s cb4.chrX              10837869 81 + 21540570 AGATTCACCGGTtaggaatttccagatgtttGAGGAGCAGGGAGGTTCCTGGAGAAA---AAGAACTATTTGAAGGATCCCACA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3770570 64 +  4147112 ---------GAATGTGAA-----ACAAGTTTGTAAAAAAGTCA---TTCtggataga---aagaaaaaacttaattttttaaGA
i caePb3.Scfld02_0      I 11 I 630
e caeJap4.Scaffold18194   665977 414 +   823664 I
e caeSp111.Scaffold626     93451 363 -  1189296 I
e caeRem4.Crem_Contig0   2244177 444 -  4500979 I

a score=599.000000
s ce10.chrX              5491091 59 + 17718866 ATGAATAATGAGATATTGAGAACCAGAACCAATTGAAAACTATTTTCCTTAAAAATATT
s cb4.chrX              10837950 53 + 21540570 TTCAATGGAggtaaatttagaaaaaaaacgacacaAAAA------TGCTTATAAAGATT
i cb4.chrX              C 0 I 501
e caePb3.Scfld02_0       3770634 630 +  4147112 I
e caeJap4.Scaffold18194   665977 414 +   823664 I
e caeSp111.Scaffold626     93451 363 -  1189296 I
e caeRem4.Crem_Contig0   2244177 444 -  4500979 I

a score=0.000000
s ce10.chrX              5491150 1373 + 17718866  
e caePb3.Scfld02_0       3770634  630 +  4147112 I
e caeJap4.Scaffold18194   665977  414 +   823664 I
e cb4.chrX              10838003  501 + 21540570 I
e caeSp111.Scaffold626     93451  363 -  1189296 I
e caeRem4.Crem_Contig0   2244177  444 -  4500979 I

a score=643.000000
s ce10.chrX              5492523 45 + 17718866 AAATTTCAATCCAGTGATCAGCT-ATTTGCAAAATCTTCTGAA--TGT
s cb4.chrX              10838504 48 + 21540570 AACTTTCTCTTTAGTTATCGGCTCATCAGCATAGCCGTCTACACTTAT
i cb4.chrX              I 501 C 0
e caePb3.Scfld02_0       3770634 630 +  4147112 I
e caeJap4.Scaffold18194   665977 414 +   823664 I
e caeSp111.Scaffold626     93451 363 -  1189296 I
e caeRem4.Crem_Contig0   2244177 444 -  4500979 I

a score=-32.000000
s ce10.chrX              5492568 6 + 17718866 -CCCCCG
s cb4.chrX              10838552 6 + 21540570 -GCCCCG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     93814 6 -  1189296 CCCTCC-
i caeSp111.Scaffold626  I 363 C 0
e caePb3.Scfld02_0       3770634 630 +  4147112 I
e caeJap4.Scaffold18194   665977 414 +   823664 I
e caeRem4.Crem_Contig0   2244177 444 -  4500979 I

a score=875.000000
s ce10.chrX              5492574 4 + 17718866 GTAG
s caeRem4.Crem_Contig0   2244621 4 -  4500979 GTAA
i caeRem4.Crem_Contig0  I 444 C 0
s caeSp111.Scaffold626     93820 4 -  1189296 GTAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3770634 630 +  4147112 I
e caeJap4.Scaffold18194   665977 414 +   823664 I
e cb4.chrX              10838558 0 + 21540570 C

a score=10420.000000
s ce10.chrX              5492578 12 + 17718866 CGTAGCCTACAT
s cb4.chrX              10838558 10 + 21540570 --TAGCCTACat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2244625 12 -  4500979 CGTAGCCTACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     93824 12 -  1189296 CGTAGCCTACAT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   666391 12 +   823664 CGTAGCCTACAT
i caeJap4.Scaffold18194 I 414 C 0
e caePb3.Scfld02_0       3770634 630 +  4147112 I

a score=928014.000000
s ce10.chrX              5492590 1305 + 17718866  
s cb4.chrX              10838568 1388 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2244637 1243 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     93836 1289 -  1189296  
i caeSp111.Scaffold626  C 0 I 33
s caePb3.Scfld02_0       3771264 1263 +  4147112  
i caePb3.Scfld02_0      I 630 I 2
s caeJap4.Scaffold18194   666403 1270 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-7569.000000
s ce10.chrX              5493895 36 + 17718866 ATTCAAAAAAAACATCATATATGTGAAACATTTGCT-----
s cb4.chrX              10839956 24 + 21540570 ------------AAATAGAATTTGGAAGATCccttt-----
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2245880 24 -  4500979 ------------AATTATAATTCTGTGAAAAGCaat-----
i caeRem4.Crem_Contig0  C 0 I 7
s caePb3.Scfld02_0       3772529 28 +  4147112 tttcattgtacaaattttaatttcgaaa-------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   667673 27 +   823664 --------------AGttaatgttgaaaaaaataaagaaaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     95125 33 -  1189296 I

a score=939915.000000
s ce10.chrX              5493931 1324 + 17718866  
s cb4.chrX              10839987 1323 + 21540570  
i cb4.chrX              I 7 I 29
s caeRem4.Crem_Contig0   2245911 1296 -  4500979  
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626     95158 1292 -  1189296  
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       3772557 1297 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   667700 1311 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-5355.000000
s ce10.chrX              5495255 30 + 17718866 ------TCGGCGGCTTGAAAATACCC-----GAAATAT-TGC
s caeRem4.Crem_Contig0   2247207 30 -  4500979 ------TGATCGAATTGAAACTATCC--TAAAAAAtgt----
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626     96450 27 -  1189296 --------ATCGAAATGTAAATACCc-----gaaatat-tt-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3773854 33 +  4147112 --------ATCGAATTGTAAACATCCTCCCAAAAATATCTT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   669011 23 +   823664 TCGCCATCTTCCATATCTGAATA-------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10841310 29 + 21540570 I

a score=187922.000000
s ce10.chrX              5495285 581 + 17718866  
s cb4.chrX              10841339 607 + 21540570  
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   2247238 640 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626     96477 620 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3773887 642 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   669034 603 +   823664  
i caeJap4.Scaffold18194 C 0 I 32

a score=5634.000000
s ce10.chrX              5495866 27 + 17718866 TA---------ATTGAATATATATCCAGCCCTGAGA
s cb4.chrX              10841946 36 + 21540570 tttgacaaatcaATTATTTGTTTAGCATACCCGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2247878 28 -  4500979 TCCGACA--------CTTTTTTATGCATATCCGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     97097 32 -  1189296 TTTGACA----ATTCCCCTTTTAAGCATACCCGAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3774529 31 +  4147112 tttgac-----atttcttttttaagCATACCCGAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   669637 32 +   823664 I

a score=45001.000000
s ce10.chrX              5495893 470 + 17718866  
s cb4.chrX              10841982 478 + 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2247906 486 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold626     97129 441 -  1189296  
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       3774560 474 +  4147112  
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18194   669669 503 +   823664  
i caeJap4.Scaffold18194 I 32 C 0

a score=0.000000
s ce10.chrX              5496363 41 + 17718866 AAACAATAATATTCTTTAAAAAATCCAATGTTTTCAATCAG
e caePb3.Scfld02_0       3775034 15 +  4147112 I
e caeJap4.Scaffold18194   670172  0 +   823664 C
e cb4.chrX              10842460 15 + 21540570 I
e caeSp111.Scaffold626     97570 10 -  1189296 I
e caeRem4.Crem_Contig0   2248392 41 -  4500979 I

a score=-44529.000000
s ce10.chrX              5496404 379 + 17718866 GGGTGCACCGCAATTTACTTTTATGAAATGTCAGCGTGACATGCTCTCAAGTTTTTTTTAAACGaaaattcaatgatagaatatagaccaatacttgatttatctgaaaataacttgaagttgatttggaacaacaaatttgctcaaaaattgtctgaaagttgaaaattgccggagatttttaaaatagtttgtctgatttttttccggaaatttacaactgtcagacaact--tttgagcatttttt-taggttttaaaaattaattacaagtgattttcagatacagtaaatatttatatatattttatcactgaatgtttataaaaaatattgaaagtgcatgTCACACTGGCTGTAGACCCTGGGTGCAATAGTATT
s cb4.chrX              10842475 147 + 21540570 ---------------------tgaaaaaggtt-------------------tttttgttATGCC-------------GGTATGTA------------------------------------------AAAATCATAGACGTGCAAGA----------------GAAAAT---------CTTGTGGGTTCGGTCA---------CTGCGGAACAACCGAAATAAGCAGATATTT--TTCCAAGACATTC------TCTTCCACATCACT----------------------------------GATGTTTTA----------------------------------------------TATAGGC------------------
i cb4.chrX              I 15 C 0
s caePb3.Scfld02_0       3775049 107 +  4147112 -----------------------------------------------------tttataaaCCC-----TCAA--ATAGTATAAA-----------------------------------------TGAAATcacgaatttgaa-----------------------------------ttttggattcaac-----------cttttgaaaaatt-----------acaatt--tgCAA-----------------TCCAAATTTGT-----------------------------------ACGTTTCA----------------------------------------------AGAAGGCC-----------------
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18194   670172 182 +   823664 -----------------------------------------actttttttgtttttatgtgtttttaaTTCAGTttcatcatcaa-------------------------------------aacatgaaaccac---cccgcccac-------------------------------ttttttcacgcgaatgttaaat---tttcagtGCATTT---------TGACATTTGGTTCGaaaaaaaGTTGGagaggtttcattttttt----------------------------------gatgatgta-----------------ACTCGATTCGAAACGCAATAC--------AGAAGATT-----------------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626     97570  10 -  1189296 I
e caeRem4.Crem_Contig0   2248392  41 -  4500979 I

a score=-7622.000000
s ce10.chrX              5496783 23 + 17718866 ----AGAAAGTACGATAACTTTTAGTA
s cb4.chrX              10842622 10 + 21540570 ----ATAGGACAAA-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     97580 18 -  1189296 ----agaaattaaaata-----taaaa
i caeSp111.Scaffold626  I 10 C 0
s caePb3.Scfld02_0       3775156  2 +  4147112 -------------------------TA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   670354 15 +   823664 AAAAAGAAATTCAAG------------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2248392 41 -  4500979 I

a score=389467.000000
s ce10.chrX              5496806 513 + 17718866  
s cb4.chrX              10842632 465 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2248433 505 -  4500979  
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold626     97598 482 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3775158 510 +  4147112  
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   670369 562 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=151.000000
s ce10.chrX              5497319 3 + 17718866 AGA
s caeJap4.Scaffold18194   670931 3 +   823664 aaa
i caeJap4.Scaffold18194 C 0 I 866
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e cb4.chrX              10843097 0 + 21540570 C
e caeSp111.Scaffold626     98080 0 -  1189296 C
e caeRem4.Crem_Contig0   2248938 0 -  4500979 C

a score=-15017.000000
s ce10.chrX              5497322 120 + 17718866 TTTTTTTAACATCGTATTTGATTCTGAATAAAATATGTAACACGACATGAGGAAAATTGATTAAAAACCAATTCTATTGTGTTTAAATGATCAAATATCATGATACaatttttatttaaa
s cb4.chrX              10843097  43 + 21540570 ------TAATTACGTTTTTCTT--------------------------------AGTTTCTCAAATA--AGTTCCAATATTTC-------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2248938  16 -  4500979 ------TAA-------------------------------------------------ACCAAAACA--CGTT-----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     98080  33 -  1189296 --------------tttttcacGC-------------------------AGGGAAATAACCTGAACAGTAAT------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3775668  10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I

a score=304.000000
s ce10.chrX              5497442 10 + 17718866 aaaaattttt
s cb4.chrX              10843140  6 + 21540570 ----ATTCTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I
e caeSp111.Scaffold626     98113  0 -  1189296 C
e caeRem4.Crem_Contig0   2248954  0 -  4500979 C

a score=-1590.000000
s ce10.chrX              5497452 33 + 17718866 CGGAATGTTTTGGTTTTGATTTAAAAACACAGT
s cb4.chrX              10843146 24 + 21540570 CAGCAAGTTCT-------ACTTAAAATCATA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     98113  9 -  1189296 ------------------AATTACAGT------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I
e caeRem4.Crem_Contig0   2248954  0 -  4500979 C

a score=172.000000
s ce10.chrX              5497485 19 + 17718866 GAAAACTGAGTCGATCAAA
s cb4.chrX              10843170  8 + 21540570 -----------TGATCAAG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I
e caeSp111.Scaffold626     98122  0 -  1189296 C
e caeRem4.Crem_Contig0   2248954  0 -  4500979 C

a score=-94.000000
s ce10.chrX              5497504 56 + 17718866 AAAATTCTTCCAGTTTTATGATTTAATTATTTTCAAAATATTCAGATTTCAAGATT
s caeRem4.Crem_Contig0   2248954 23 -  4500979 ---------------------TTCAACTCTTTCCGAA------------CAAAATT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I
e cb4.chrX              10843178  0 + 21540570 C
e caeSp111.Scaffold626     98122  0 -  1189296 C

a score=0.000000
s ce10.chrX              5497560 65 + 17718866 GTAGGGGTTCGAATTTTTGACTACTTGTAATTTGTTATTAAATCATTTTAGCAGCATAAAGTTGG
e caePb3.Scfld02_0       3775668 10 +  4147112 I
e caeJap4.Scaffold18194   670934 866 +   823664 I
e cb4.chrX              10843178  0 + 21540570 C
e caeSp111.Scaffold626     98122  0 -  1189296 C
e caeRem4.Crem_Contig0   2248977  0 -  4500979 C

a score=646.000000
s ce10.chrX              5497625 7 + 17718866 TTTTCAA
s caePb3.Scfld02_0       3775678 7 +  4147112 ttttcaa
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold18194   670934 866 +   823664 I
e cb4.chrX              10843178 0 + 21540570 C
e caeSp111.Scaffold626     98122 0 -  1189296 C
e caeRem4.Crem_Contig0   2248977 0 -  4500979 C

a score=-1119.000000
s ce10.chrX              5497632 19 + 17718866 -----TCATTTTTTTCACAGGCCA
s caeSp111.Scaffold626     98122  6 -  1189296 -----TCATTT-------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3775685 10 +  4147112 gcaGGTTATT--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   670934 866 +   823664 I
e cb4.chrX              10843178  0 + 21540570 C
e caeRem4.Crem_Contig0   2248977  0 -  4500979 C

a score=-2157.000000
s ce10.chrX              5497651 16 + 17718866 TATTCCACCTTCAAGG
s cb4.chrX              10843178 11 + 21540570 TACCCC-TTCTC----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626     98128  8 -  1189296 --------CTTCAGGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3775695  7 +  4147112 ---------CTCAGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   670934 866 +   823664 I
e caeRem4.Crem_Contig0   2248977  0 -  4500979 C

a score=-1656.000000
s ce10.chrX              5497667 12 + 17718866 ----TGAGAACCTTCC
s caeRem4.Crem_Contig0   2248977 12 -  4500979 ----TGTGAATGATCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     98136  7 -  1189296 AG---------GAATA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3775702 16 +  4147112 AAAGTGCAAATGATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   670934 866 +   823664 I
e cb4.chrX              10843189  0 + 21540570 C

a score=624818.000000
s ce10.chrX              5497679 1158 + 17718866  
s cb4.chrX              10843189 1081 + 21540570  
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   2248989 1116 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     98143 1105 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3775718 1127 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   671800 1504 +   823664  
i caeJap4.Scaffold18194 I 866 C 0

a score=282.000000
s ce10.chrX              5498837 3 + 17718866 AGT
s caeJap4.Scaffold18194   673304 3 +   823664 AGT
i caeJap4.Scaffold18194 C 0 I 36
e caePb3.Scfld02_0       3776845 0 +  4147112 C
e cb4.chrX              10844270 33 + 21540570 I
e caeSp111.Scaffold626     99248 0 -  1189296 C
e caeRem4.Crem_Contig0   2250105 0 -  4500979 C

a score=-5191.000000
s ce10.chrX              5498840 37 + 17718866 TCCAGTGCGTGAGAAA--TAATTGGCAAAAAAACGAAAC-----------------
s caeRem4.Crem_Contig0   2250105 42 -  4500979 ------------AAAA--CCATTATAAAACTAACAAAACCCACCGAAAGCCACTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     99248 29 -  1189296 ------------AAAA--GAATTgtgaagaaacgaaaata----gAT---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3776845 32 +  4147112 ------------aatatttagttATTGAGGA---AAAATATGACAAC---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   673307 36 +   823664 I
e cb4.chrX              10844270 33 + 21540570 I

a score=-477.000000
s ce10.chrX              5498877 5 + 17718866 TATTT
s cb4.chrX              10844303 5 + 21540570 tattt
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   2250147 5 -  4500979 TAGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     99277 5 -  1189296 TCGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3776877 5 +  4147112 TAGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   673307 36 +   823664 I

a score=49442.000000
s ce10.chrX              5498882 213 + 17718866 TCT-------ATTAAACCTCAAATTGTAAAC----CGAGGGGTTTCGAAAA-------CTTTTATAGAA--TTGCACGGCACGTCGTTAAG-AAAAGGGACTCGT----------AAAAAATCTATTTT--AGACCATGCTTTGATATTTTGAATCTAG-ATGACATATTAATTCAAACTTTTGG----------------AACTGCTTACTTT-----------ATCATTGTTTTAT----TTGGAATTT------TCATTTCG-----------------------------ACTTATTCAGTTTTTTTCT
s cb4.chrX              10844308 239 + 21540570 tcagaaaactatgaaacttcaaattgtgagcagttttgaaattttttgagg-------a----aaagaAACTTGCACGGCACGTCGTTAAATAAAAGGGAATAGT-------Aatagaaaatttatttg--agACCATGCGTGGTATTTTAGGTTCTAGGATGACATATTATTTCAAACTTCAGA-------TTGTTTTCACCTTACTCACttt------tatttatcaaagttttgg----ttttgaaat---------atttga----------------------------ttttattcaaatttggtct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2250152 226 -  4500979 TAA-------ATGAAACTTCAAATTGTcaac----ttaaaattttcaaaaa-------attgtatagAAG-TTGCACGGCACGTCGTTA---AAAAGGGACTCGT------------AAAATCTATTGT--AGACCATGCGTGGTGTTTTAATATCT---ATGACATATTA-TTCAAACttcaaatgaaagtttttttgtaccttactcacttt------ttttttc-----tttttt----ttctttggt---------ttttgagttc-----------------------ggtttactcatttttgttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     99282 219 -  1189296 Tct-------atgaaaattcaaattgtgAAC----TGAGAATTTGGCAAGA-------ATTGTATAAAA--TTGCACGGCACGTCGTTAA--AAAGGGGACTCAT----------GAAACTTCTATTTT--AGACCATGCGTTTCGTTTTAATATCT---ATGACatattattcaaaacttcaa----------ttcTGACCCTTACTCACTTTatgaaatatggaaaagaGTTTTCGACTATTCTAACTT---------TTCTGTAAAT------------------------GTTCA--------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3776882 282 +  4147112 Tct-------aatgaaattcaaattgtaaac----tgagaattt-tcaaaatttttttatggaaaaaaa--ttgcacgGCACGTCGTTAA--AAAGgggtttctt--------tgaaaaaaactatttt--agaCCATGCGTATTGTTTTAATATCT---ATGACATATtattccaaacttcaaa--atgatttttgcaaCTCGTACTCACTTCTCAAAATATATAATATCGTATTGGTTTATTCTAATTTActctgtaattttgaaaactataaaaatggaTATTTGGTGCGGGTACAATCAATTTAAGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   673343 220 +   823664 TCT-------AAGTAACTCCAAAGTGTAAAC----TTAAGGGTT-CCAAAA-------ACTTTATGAGA--TTGCACGGCACGTTGTTA---AGAAAGGGTTCGCGATAACagaaaaaacaactattttgGAGACCATGCGTTGAACCCTAACTAAT---TTGACATattatttcaaacttttca-----------------agtaACAACTTC-------------AAATGTTTTGAGCACTTTCAGTTC---------TCAccaa---------------------------gtttatttatttttttgct
i caeJap4.Scaffold18194 I 36 I 2898

a score=-15533.000000
s ce10.chrX              5499095 50 + 17718866 GAAAATTCTTTCACCAAATTATTGTATTTTATT-----------------------------------GTC----------------------TCGTAACATCttta
s cb4.chrX              10844547 43 + 21540570 ggaattttt-------aggagtcggataatttt-----------------------------------att----------------------gattgaaaaattaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2250378 41 -  4500979 gaaaactct-------aaaaactgAAGGCTact-----------------------------------att------------------------ttgagtttttga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626     99501 36 -  1189296 ----------------GCGTAGtatatagattt-----------------------------------ttt--------------------ttaatttagaagttga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3777164 96 +  4147112 CGA----CT-------GGGtgttgaataaatttgaaaagcatTAAAACTATCCCGACCAAAACAATTATTTAAGCTTGCTTATATtgataattgattttcaagctTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   673563 2898 +   823664 I

a score=397699.000000
s ce10.chrX              5499145 573 + 17718866  
s cb4.chrX              10844590 588 + 21540570  
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   2250419 584 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 34
s caeSp111.Scaffold626     99537 583 -  1189296  
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       3777260 600 +  4147112  
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   676461 584 +   823664  
i caeJap4.Scaffold18194 I 2898 C 0

a score=0.000000
s ce10.chrX              5499718 13 + 17718866 TAAGTTAATAACT
e caePb3.Scfld02_0       3777860  8 +  4147112 I
e caeJap4.Scaffold18194   677045  0 +   823664 C
e cb4.chrX              10845178 20 + 21540570 I
e caeSp111.Scaffold626    100120 10 -  1189296 I
e caeRem4.Crem_Contig0   2251003 34 -  4500979 I

a score=-5580.000000
s ce10.chrX              5499731 27 + 17718866 AAGAAGCGAGC--------------TCTGAAAAAGTGAACA---
s caeSp111.Scaffold626    100130 24 -  1189296 AGGTAGaa-----------------tttaattaaatattGA---
i caeSp111.Scaffold626  I 10 C 0
s caePb3.Scfld02_0       3777868 27 +  4147112 AAATGAAACTC--------------TCCAACTCATCAAGAA---
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18194   677045 44 +   823664 AAACGATTTCcttattagttttttttttggtttatttaTCAACA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10845178 20 + 21540570 I
e caeRem4.Crem_Contig0   2251003 34 -  4500979 I

a score=-1372.000000
s ce10.chrX              5499758 9 + 17718866 TTTCAAAAT
s cb4.chrX              10845198 9 + 21540570 tttcaaatt
i cb4.chrX              I 20 I 5
s caeSp111.Scaffold626    100154 1 -  1189296 --------T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3777895 1 +  4147112 --------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   677089 8 +   823664 ATTCAAAG-
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2251003 34 -  4500979 I

a score=222213.000000
s ce10.chrX              5499767 257 + 17718866 TCTCTCACCCGTTCCATCAACTCTGTGTTTTTGAGCTCGACTTCTTTCATTTTTGATTCCAGGTCTTCCGTGTGAACAGTGTTTTTGTTCGAGTCCTCTACCACTGCTATTCGCTTTTTTATCTTTTGTGAACTTTGCTGCTGAATGATTGATACTAGTTTCTGTTGTAGAACTGTGACTTGACGACGAGTTGTTTCAAGTTCAGCTTTGCAAATTCTTAGACGTTCTTCATTTTCATCGAATAAGGCACCCTGGAA
s cb4.chrX              10845212 257 + 21540570 tGGCTTACTCTTTCGAGCAACTCGGTGTTCTTCAATTCAACTTCTCTCAACTTGGTGTCCATATCATCAGAGGTTACAGTGTTCTTGTTCGTGTCTTCCACCACTGCTatcctttttttgattttctgtgaGCCTTGCTGTTGAATGATGGAAACCAGCTTTTGTTGGAGTACTGTAACCTGGCGGCGTGTTGTGTCCAATTCAGCTTTACAGATTCTCAGTCGTTCCTCATTTTCATCAAATAACGCAccctgaaa
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2251037 257 -  4500979 TCTCTTACTCGTTCCATtaattcagtatttttcaattcgactTCTCTTAACTTTGTATCCAAGTCATCAGAATGAACAGTGTTTTTATTGGAATCTTCCACAACCGCTATTCGTTTCTTGATCTTTTGTGAGCCTTGCTGTTGAATAATAGACACGAGTTTCTGTTGTAGAACTGTGACTTGTCGACGAGTTGTTTCCAATTCTGCTTTACAAATCCTCAGTCGTTCCTCATTCTCATCAAACAATGCACCCTGCAA
i caeRem4.Crem_Contig0  I 34 I 39
s caeSp111.Scaffold626    100155 255 -  1189296 --GCTCACTCTTTCTAATAATTCAGTGTTCTTCAGTTCGACTTCTCTCAGTTTCGTTTCAATATCATCAGAATGAACAGTGTTTTTATTAGTGTCTTCCACAACGgctattcgttttttgatcttctgCGATCCTTGTTGTTGAATGATAGAAACCAATTTCTGTTGTAGTACTGTAACTTGTCGACGTGTTGTCTCAAGTTCTGCTTTACAAATTCGGAGcctctcttcgttttcatcaAATAGAGCCCcctggag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3777896 255 +  4147112 --TCTCACCCTCTCCATTAAttccgtgtttttcaattcaacttcTCTCAACTTGGTCTCAACGTCATCGGAAACGACTGTGTTTTTATTAGTGTCTTCTACAACCGCAATTCGTTTCTTAATCTTCTGTGACCCTTGTTGTTGAATGATAGACACCAATTTTTGTTGGAGAACTGTGACCTGTCGTCTGGTAGTTTCAAGTTCCGCTTTACAGATTCTGAGgcgttcttcattttcatcaaataaagCTCCCTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   677097 255 +   823664 --ACTTACCCTTTCCATCAATTCAGTATTCCTTAGCTCGACATCCCGCAGTTTCGCTTCTAATTCATCTGAGTTAACATTATTCTTATTTGCATCTTCTACAACTGCTATTCTCTTCTTGATCTTTTGCGAACTTTGTTGCTGAATAAAAGAAACAAGTTTCTGTTGGAGCACTGTCACTTGTCGACGAGTAGTTTCCAGTTCAGCTTTACAAACTCTGAGTCGTTCTTCATTCTCGTCAAACAAAGCGCCCTAAAA
i caeJap4.Scaffold18194 C 0 C 0

a score=-8342.000000
s ce10.chrX              5500024 34 + 17718866 ATAAAAAACTTGAAAAACATTTCT----GAAGAAACTG
s cb4.chrX              10845469 31 + 21540570 ---aataattgttgaaaattcacc----gtaaaacctg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    100410 20 -  1189296 aaaaaaaattagagaga------------------TTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3778151 20 +  4147112 TTTAACGAtgaacaaaa------------------tta
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   677352 30 +   823664 ------AGTCAGTGAAAAATATGCATGTGTAAAACG--
i caeJap4.Scaffold18194 C 0 I 8
e caeRem4.Crem_Contig0   2251294 39 -  4500979 I

a score=-2332.000000
s ce10.chrX              5500058 14 + 17718866 GAACAATTATAACC
s cb4.chrX              10845500 14 + 21540570 caatagagatgctc
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    100430 14 -  1189296 TTATAGTTTTTATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3778171  8 +  4147112 tttcagaa------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   677382  8 +   823664 I
e caeRem4.Crem_Contig0   2251294 39 -  4500979 I

a score=-2068.000000
s ce10.chrX              5500072 19 + 17718866 GGTACAGTCGCGTCAAAGC-----
s cb4.chrX              10845514 19 + 21540570 --caca---ctgtcaagtttgagc
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3778179  9 +  4147112 ----------tagCAAATC-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   677382  8 +   823664 I
e caeSp111.Scaffold626    100444  0 -  1189296 C
e caeRem4.Crem_Contig0   2251294 39 -  4500979 I

a score=-4217.000000
s ce10.chrX              5500091 306 + 17718866 GATTTCTTAGTGAACACTGAAGTTTCGCTGTGTCTGGGTTCCGTTTGCACACCAGGTACGTGGGGTAATCTAGTATTTTTATTATACGGTTTATTATAAACACTTTTGGTTTTAATAACATGGATGACTGAAAACCGCGTCCCGGACCTACAAACAAGGTCAACAACTTTCAGATAAGCTTAGTATTCTAATTTTGCCGAAAAGTGGTATTTTTTGCGAATATTTTGAGTTTGCTTGAGTAAAGAAAAATTTGCTACTCCACCTTCGTTGTAGCTCATACATATTTTGTGATAGTAGCTAATATTT
s cb4.chrX              10845533 164 + 21540570 ac----------aac---------------tatctcggtt--------------agtatgagagata---tcaaaattttgtcaattgat------------------------ataacat---tgaataaaaa-----------------aatca--gttgacaaaatttcgatatctctcatag------------gaacagtgaaaatttgttttaaagttatggggcccttctattacag-------------------------gtatttCATGCTTGTTTCTC-----------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3778188   0 +  4147112 C
e caeJap4.Scaffold18194   677382   8 +   823664 I
e caeSp111.Scaffold626    100444   0 -  1189296 C
e caeRem4.Crem_Contig0   2251294  39 -  4500979 I

a score=250.000000
s ce10.chrX              5500397 5 + 17718866 TAAAA
s caeJap4.Scaffold18194   677390 5 +   823664 TACAA
i caeJap4.Scaffold18194 I 8 C 0
e caePb3.Scfld02_0       3778188 0 +  4147112 C
e cb4.chrX              10845697 0 + 21540570 C
e caeSp111.Scaffold626    100444 0 -  1189296 C
e caeRem4.Crem_Contig0   2251294 39 -  4500979 I

a score=77111.000000
s ce10.chrX              5500402 78 + 17718866 ACCTTTTCAATAATGGTCTCCTTGTTCTTCACATTCGGTTTACAACCAACATATTTATTGATTTGCCTCGGAATCGCT
s cb4.chrX              10845697 78 + 21540570 ACCTTCTCTATAATcgtttccttgtttttcacaTTTGGCTTACATCCAACGTACTTGTTGATTTGGCGTGGAATAGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251333 78 -  4500979 ACTTTTTCTATTGttgtttccttgtttttcacaTTTGGTTTGCATCCAACATACTTATTGATTTGTCGTGGGATTGCT
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold626    100444 78 -  1189296 ACCTTCTCGATAGTggtttccttgttttttacATTCGGTTTGCATCCAACATATTTGTTAATCTGTCTTGGAATTGCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3778188 78 +  4147112 ACCTTCTCAATGATTGTCTCCTTATTTTTAACGTTTGGTTTGCATCCAACGTATTTGTTGATCTGTCGTGGATTAGCT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   677395 78 +   823664 ACCTTTTCTACTATCGTCTCCTTGTTTTTGACATTTGGCTTGCAACCAACATATTTGTTGATTTGCCGTGGAATAGCT
i caeJap4.Scaffold18194 C 0 C 0

a score=910.000000
s ce10.chrX              5500480 1 + 17718866 T
s cb4.chrX              10845775 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251411 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    100522 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   677473 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3778266 1 +  4147112 I

a score=17799.000000
s ce10.chrX              5500481 20 + 17718866 GGCATTCAACGTCGCGTTGC
s cb4.chrX              10845776 20 + 21540570 GACATTCTACATCACGCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251412 20 -  4500979 GACATTCAACATCTCTCTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    100523 20 -  1189296 GACATTCGACATCTCGTTGC
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3778267 20 +  4147112 GGCATTCTACATCTCGCTGA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   677474 20 +   823664 GACATTCAACGTCTCTTTGA
i caeJap4.Scaffold18194 C 0 C 0

a score=1000.000000
s ce10.chrX              5500501 1 + 17718866 G
s cb4.chrX              10845796 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251432 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3778287 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   677494 1 +   823664 G
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    100543 1 -  1189296 I

a score=8083.000000
s ce10.chrX              5500502 15 + 17718866 AGTGATTCACCTGAA
s cb4.chrX              10845797 15 + 21540570 ATGGGGCGgcctgga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251433 15 -  4500979 AGTGATTTGtctgaa
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold626    100544 15 -  1189296 AGTGATTTGCCTGTA
i caeSp111.Scaffold626  I 1 I 1
s caePb3.Scfld02_0       3778288 15 +  4147112 CATGATTAGTCTGTA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   677495 15 +   823664 AGTGATTAACCTAGA
i caeJap4.Scaffold18194 C 0 C 0

a score=-14200.000000
s ce10.chrX              5500517 38 + 17718866 --ATGCCACAT----TAGTTTTTCT----AGTTTCAATACAAAATTGC---------
s cb4.chrX              10845812 33 + 21540570 -----aaatca----aaatacagctaaggattttctaaaaat---------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    100560 33 -  1189296 -------ATTT----ATCTGTTCCT----CTTTGTTTCATATCAATTG---------
i caeSp111.Scaffold626  I 1 I 1
s caePb3.Scfld02_0       3778304 37 +  4147112 -------ACGTTCAGAGGTGATTCT----ATTTCTCGGAATTGACTTC---------
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold18194   677510 52 +   823664 AAAAGAGattt----aaattgtttt-attatttGCTGTGAAGCGCTATGAAAAATGC
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2251448 37 -  4500979 I

a score=615768.000000
s ce10.chrX              5500555  934 + 17718866  
s cb4.chrX              10845845  880 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2251485  932 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold626    100594  923 -  1189296  
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3778342  924 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   677562 1025 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-5700.000000
s ce10.chrX              5501489  9 + 17718866 AAAAAAAAC----------------
s cb4.chrX              10846725  9 + 21540570 aaacttttc----------------
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2252417  9 -  4500979 AAAACAtgc----------------
i caeRem4.Crem_Contig0  C 0 I 94
s caeSp111.Scaffold626    101517 24 -  1189296 aaaacatttattctTATTGA-TAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3779266 25 +  4147112 AATACACATAATTTTAGCcactttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   678587  0 +   823664 C

a score=-188.000000
s ce10.chrX              5501498 11 + 17718866 TATGACTTTTG
s cb4.chrX              10846740  4 + 21540570 agtg-------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold626    101541 11 -  1189296 CATGATTTctt
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       3779291 11 +  4147112 cataatttttg
i caePb3.Scfld02_0      C 0 I 170
e caeJap4.Scaffold18194   678587  0 +   823664 C
e caeRem4.Crem_Contig0   2252426 94 -  4500979 I

a score=-455.000000
s ce10.chrX              5501509 9 + 17718866 GAAAACAAA-
s cb4.chrX              10846744 7 + 21540570 --aaagaag-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    101560 9 -  1189296 -aaaagcaaa
i caeSp111.Scaffold626  I 8 I 182
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587 0 +   823664 C
e caeRem4.Crem_Contig0   2252426 94 -  4500979 I

a score=-547.000000
s ce10.chrX              5501518 45 + 17718866 CTACTCATGTGTATGTTGAGTTTTGAAAT--------TGAACTTGGTATTACT
s cb4.chrX              10846751 42 + 21540570 ctaaaaa-----------aagcttgaaataaaatcaaaaaacttgacGCAACG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587  0 +   823664 C
e caeSp111.Scaffold626    101569 182 -  1189296 I
e caeRem4.Crem_Contig0   2252426 94 -  4500979 I

a score=-2946.000000
s ce10.chrX              5501563 24 + 17718866 --------------------------------AGCGGGCTACAGCCTACCTTCCCA--------------------------------------
s cb4.chrX              10846793 94 + 21540570 AGCAGGAATCGAACCTACGCGGGCAAAGCCCAATGGATTTCAAGTCCATCTCCTTAACCACTCGGACATCGTTGCACGAAGGGCGAGGAGTCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2252520 24 -  4500979 --------------------------------ATTGGGGTAAGGTCCACctcctta--------------------------------------
i caeRem4.Crem_Contig0  I 94 I 86
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587  0 +   823664 C
e caeSp111.Scaffold626    101569 182 -  1189296 I

a score=121.000000
s ce10.chrX              5501587 11 + 17718866 CGTTCCTGCCT
s cb4.chrX              10846887 11 + 21540570 TGTGTATGTTT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587  0 +   823664 C
e caeSp111.Scaffold626    101569 182 -  1189296 I
e caeRem4.Crem_Contig0   2252544 86 -  4500979 I

a score=-5976.000000
s ce10.chrX              5501598 13 + 17718866 TCCCACTGT----------------------------------------------------------GCCT-------
s cb4.chrX              10846898 78 + 21540570 TATGACTGCCgggaaaaaagagggacagagagagaaagaaagagaagaacggagagaggggggaagtgttgagaaCCT
i cb4.chrX              C 0 I 38
s caeSp111.Scaffold626    101751 13 -  1189296 TCTTA--------------------------------------------------------------ATTTAGCA---
i caeSp111.Scaffold626  I 182 C 0
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587  0 +   823664 C
e caeRem4.Crem_Contig0   2252544 86 -  4500979 I

a score=306.000000
s ce10.chrX              5501611 4 + 17718866 ACAA
s cb4.chrX              10847014 4 + 21540570 tgaa
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   2252630 4 -  4500979 agca
i caeRem4.Crem_Contig0  I 86 C 0
s caeSp111.Scaffold626    101764 4 -  1189296 AGAA
i caeSp111.Scaffold626  C 0 I 4
e caePb3.Scfld02_0       3779302 170 +  4147112 I
e caeJap4.Scaffold18194   678587 0 +   823664 C

a score=-818.000000
s ce10.chrX              5501615  9 + 17718866 AAA----------------TAAAAA
s cb4.chrX              10847018  9 + 21540570 aaa----------------tggaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2252634 25 -  4500979 aaatttagaaaagtacGTTTGGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    101772  6 -  1189296 AAA----------------TAA---
i caeSp111.Scaffold626  I 4 I 5
s caePb3.Scfld02_0       3779472  9 +  4147112 AAA----------------TAGAAA
i caePb3.Scfld02_0      I 170 I 102
e caeJap4.Scaffold18194   678587  0 +   823664 C

a score=3139.000000
s ce10.chrX              5501624  9 + 17718866 ------CAAACCTGG
s cb4.chrX              10847027 15 + 21540570 ttaattGTTACCTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2252659 15 -  4500979 TTAATCCTCACCTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    101783  9 -  1189296 ------CTTACCTGG
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3779583  9 +  4147112 ------CATACCTGG
i caePb3.Scfld02_0      I 102 C 0
e caeJap4.Scaffold18194   678587  0 +   823664 C

a score=370058.000000
s ce10.chrX              5501633 592 + 17718866  
s cb4.chrX              10847042 586 + 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   2252674 569 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626    101792 566 -  1189296  
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3779592 580 +  4147112  
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194   678587 538 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-10983.000000
s ce10.chrX              5502225 32 + 17718866 ACATAAAT---TTGTATT-------------AAAGTTACATTTCATTT
s caeRem4.Crem_Contig0   2253254 28 -  4500979 aaaaaagtgttttttaat-------------CAAAGCATTT-------
i caeRem4.Crem_Contig0  I 11 I 1
s caeSp111.Scaffold626    102370 27 -  1189296 GGAAAACTGAGTTTAAA---------------AAACTACCGC------
i caeSp111.Scaffold626  I 12 C 0
s caePb3.Scfld02_0       3780184 26 +  4147112 GTGTAACT---TTTAAAC-------------GAAATTCAACT------
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194   679125 36 +   823664 acttcaat---ttttaatACTTACTGTTTTGAATACTGC---------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10847628 37 + 21540570 I

a score=295393.000000
s ce10.chrX              5502257 369 + 17718866 TTACCTGTATGTGGTTCAAAGCTTCTTGACTACAGTAAATTGTCTGATTTTTATTATCTCCGGTTACAAGAGGAATCATCATCGGACTGGGGCTGTGGAGATCTGGATGACTTGCAATGATGGAAAGTGGAGTAGATGGGTCGGCTTGAATCGTTTGGGAAACTGAACATAAATCTTGAATACTG----T-G-AAAATGATTATAA---ACCGACCAAGTGTTCCATTCTGATTTGGGTCTGAAGGGTCTGGTGGGTTCGGGCGTAAATAAAAATCTCGCTCTATTTCATCGGTTTGTGTTTCACAATCAGATTTCGGTGGATTGAGTTGTTCTTCCAAGTTTGCTACTCGAGAAGTCAGTTTTACGGCTTCCTCTCT
s cb4.chrX              10847665 368 + 21540570 TTACCTGAATGTGGTTCAATGCTTCTTGACTACAATAAATCGTTTGATTCTTGTTATCTCTTGTCACTAAGGGAATCATCATTGGGCTGGGACTGTGAAGGTCTGGTTGGGTGGCAATGATGGATAATGGGGTCGAAGGGTCGGCTTGAATTGTTTGGGAAACTgaatacaaattttttataagg----TGG-AAAA-----ATGTGAGATTAACCTAAAGTTCCATTCTGATTAGCATCAGTTGGGTCTGGCGGGTTTTGTCGCAGATAGAATTCTCGTTCCACTTCGTCTGTTTGTGTTTCACCATCGGACCTTGGTGGATTCAGTTGTTCTTCTAGGTAAGCAACGCGTGATGTCAACTTCACAGCTTCTTCTCT
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   2253283 375 -  4500979 TTACCTGAATATGATTCAACGCTTCTTGACTGCAGTAAATTGTCTGATTTTTGTTATCACCGGTCACCAGCGGAATCATCATTGGACTTGGACTGTGGAGATCTGGTTGTGTGGCAATGATGGATAGAGGCGTTGATGGATCTGCTTGGATTGTTTGAGAAACTGAACATAAA--ATGGATGAGATAATTGG-AAAGTGATTATCTCATACTTACCAAGTGTTCCGTTTTGATTGGGGTCAGATGGATCAGGTGGGTTATGGCGAAGATAAAATTCACGTTCCATTTCATCAGTTTGGGTCTCACCGTCTGATCTAGGAGGGTTTAGTTGTTCCTCCAGATATGCGACTCGGGAAGTCAGTTTTACAGCTTCTTCTCT
i caeRem4.Crem_Contig0  I 1 I 66
s caeSp111.Scaffold626    102397 369 -  1189296 CTACCTGAATATGATTCAAGGCTTCTTGACTACAATAAAtcgtttgatttttgttgtcACCAGTCACAAGAGGAATCATCATTGGACTGGGACTGTGAAGGTCTGGCTGTGTGGCAATGATAGATAATGGTGTCGATGGATCGGCTTGGACTGTTTGAGAAACTGAAcatgaaaca---gtaaaa------ataaTGTGTGAATGATTGTGTTACCGAGTGTCCCGTTTTGATTAGGATCTGATGGGTCAGGAGGGTTATGTCGAAGATAAAATTCTCGTTCTACTTCATCAGTTTGAGTTTCCCCATCTGATCTAGGAGGATTGAGTTGCTCTTCCAAGAATGCTACTCGTGATGTTAACTTCACGGCTTCCtctct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3780210 371 +  4147112 TTACCTGAATATGATTCAAAGCTTCTTGACTGCAATATATCGTCTGATTTTTGTTGTCACCAGTCACCAAAGGAATCATCATAGGACTGGGACTGTGAAGGTCTGGTTGGGTGGCAATGATAGATAATGGTGTTGATGGATCCGCTTGAATGGTTTGAGAAACTGAACATAAAATGTGTGTATGA------G-AAAGTGTTAACAGGTTGATTACCTAGTGTTCCGTTTTGATTAGGATCTGATGGATCTGGAGGGTTATGACGGAGGTAGAATTCTCGTTCTATTTCGTCTGTTTGGGTTTCACCATCTGATTTCGGAGGGTTTAGTTGTTCTTCGAGGAATGCAACTCGTGATGTCAGCTTCACAGCCTCTTCCCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   679161 360 +   823664 ATACCTGAATATGATTCAAAGCCTCTTGACTACAGTATATTGTCTGGTTCTTGTTGTCACCGGTTACTAGCGGAATCATCATCGGACTGGGACTGTGTAGGTC---------AGCCACAATTGACAACGGGGTTGATGGGTCTGCTTGAATGGTTTGAGAAACTGAACACTATAATTGATAACGA----TGA-GAACCAATTATC----ACCTACCAATCGTTCCTGACTGATTAGGGTCAGATGGATCTGGTGGATTGCATCTGAGGTAGAATTCCCTTTCAACTTCATCCGTTTGAGTTTCACAATCTGATTTTGGAGTGTTTAATAGTTCTTCGAGATATGCAACTCTTGATGTTAACTTTACTGCTTCTtctct
i caeJap4.Scaffold18194 C 0 C 0

a score=2007.000000
s ce10.chrX              5502626 3 + 17718866 AAA
s cb4.chrX              10848033 3 + 21540570 AAA
i cb4.chrX              C 0 I 31
s caeSp111.Scaffold626    102766 3 -  1189296 aaa
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       3780581 3 +  4147112 GAA
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold18194   679521 3 +   823664 gaa
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2253658 66 -  4500979 I

a score=536.000000
s ce10.chrX              5502629 5 + 17718866 TCAAT
s caeSp111.Scaffold626    102777 5 -  1189296 tcaat
i caeSp111.Scaffold626  I 8 C 0
s caeJap4.Scaffold18194   679524 5 +   823664 aaaat
i caeJap4.Scaffold18194 C 0 I 46
e caePb3.Scfld02_0       3780584 32 +  4147112 I
e cb4.chrX              10848036 31 + 21540570 I
e caeRem4.Crem_Contig0   2253658 66 -  4500979 I

a score=319.000000
s ce10.chrX              5502634 7 + 17718866 AGTTGAA
s caeSp111.Scaffold626    102782 7 -  1189296 ggtttaa
i caeSp111.Scaffold626  C 0 I 7
e caePb3.Scfld02_0       3780584 32 +  4147112 I
e caeJap4.Scaffold18194   679529 46 +   823664 I
e cb4.chrX              10848036 31 + 21540570 I
e caeRem4.Crem_Contig0   2253658 66 -  4500979 I

a score=0.000000
s ce10.chrX              5502641 779 + 17718866  
e caePb3.Scfld02_0       3780584  32 +  4147112 I
e caeJap4.Scaffold18194   679529  46 +   823664 I
e cb4.chrX              10848036  31 + 21540570 I
e caeSp111.Scaffold626    102789   7 -  1189296 I
e caeRem4.Crem_Contig0   2253658  66 -  4500979 I

a score=-213.000000
s ce10.chrX              5503420 5 + 17718866 AAGTC--
s caeSp111.Scaffold626    102796 5 -  1189296 aagtc--
i caeSp111.Scaffold626  I 7 C 0
s caePb3.Scfld02_0       3780616 7 +  4147112 aacttca
i caePb3.Scfld02_0      I 32 C 0
e caeJap4.Scaffold18194   679529 46 +   823664 I
e cb4.chrX              10848036 31 + 21540570 I
e caeRem4.Crem_Contig0   2253658 66 -  4500979 I

a score=1109.000000
s ce10.chrX              5503425 9 + 17718866 AAAACACTA
s cb4.chrX              10848067 9 + 21540570 AAAAGAATT
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   2253724 9 -  4500979 aaaatacaa
i caeRem4.Crem_Contig0  I 66 C 0
s caeSp111.Scaffold626    102801 7 -  1189296 --AAAGCAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3780623 7 +  4147112 --aaaacat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   679529 46 +   823664 I

a score=490931.000000
s ce10.chrX              5503434 645 + 17718866  
s cb4.chrX              10848076 643 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2253733 654 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    102808 637 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3780630 624 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   679575 684 +   823664  
i caeJap4.Scaffold18194 I 46 I 620

a score=-10019.000000
s ce10.chrX              5504079 40 + 17718866 GATAACCGTTATGGATCATAATTTTTGAAAAAAAACCGCT------
s cb4.chrX              10848719 34 + 21540570 gaaat-tgTTCAG-----TGAA----ACGGAAAATTAAGT--GCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2254387 35 -  4500979 gaata-ggtTATG-----TAAATGTgaaggaaaaataaac-----a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    103445 34 -  1189296 gaa----att--------gGAATGTTACACATGAGTAATTTAACAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3781254 37 +  4147112 GAA----GTTTTA-----TGAGTGTAAAAGTTAAATTGGGAAACAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   680259 620 +   823664 I

a score=113498.000000
s ce10.chrX              5504119 120 + 17718866 ACCTGATTTGTAATGCCCTTGTCGGCTTCTCTTCTTCTCGCCTTCCATTCCCCAAATCTCGCATCAAATGTTCCGAGTCTGTATTGTTCTCATCACTTGTTTCACCGATAAATGCAACTG
s cb4.chrX              10848753 120 + 21540570 ACCGTATTTGTAAAGCTCTTGgatttctctcttcttctcgtcGGCCATTTCCAAGGTCTCGCATCAGATGTTCAGAATCTGTGTTGTTCTCGTCGCTTGTTTCACCGATAAATGcgactg
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   2254422 120 -  4500979 acCTTATTTGTAAAGCTCGAGAaggtttttcttcttctctccttccaTTCCCCAGATCTCGCATCAAATGTTCAGAGTCTGTGTTGTTTTCATCACTTGTTTCACCAATGAATGCAACTG
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold626    103479 120 -  1189296 ACCTTATTTGTAGAGCTCtgggatttttttcttcttctcgcctTCCGTTCCCCAAATCTCGCATCAAATGTTCAGAATCTGTGTTGTTTTCATCACTTGTTTCTCCAATGAATGCgactg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3781291 120 +  4147112 ACCTAATTTGCAATGCTCTGTGTGTCTTTTCTCCATCTCGCCTCCCATTACCCAAATCTCGCATCAAATGTTCGGAGTCCGTATTGTTTTCATCACTTGTTTCACCAATGAATGCCACTG
i caePb3.Scfld02_0      C 0 I 133
s caeJap4.Scaffold18194   680879 120 +   823664 ACctgacttgcaacttttcagTAGGTTTCTGTTCCGTTCTTCTCCCATTCCCCAAATCTCGCATCAAATGCTCCGAATCTGTGTTATTCTCGTCACTGGTTTCGCCAATAAATGcaactg
i caeJap4.Scaffold18194 I 620 C 0

a score=0.000000
s ce10.chrX              5504239 18 + 17718866 Caataaaataataaacat
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeJap4.Scaffold18194   680999  0 +   823664 C
e cb4.chrX              10848873 12 + 21540570 I
e caeSp111.Scaffold626    103599  0 -  1189296 C
e caeRem4.Crem_Contig0   2254542 42 -  4500979 I

a score=-4518.000000
s ce10.chrX              5504257 149 + 17718866 gttttcaaatattttttgaaaagttaaaaaatcttaatacgatttattttttaaaaattaaaaaaaaCTTTCTTATTTGGGTGCAACTGTCATTTGGAAAATTGATTTTTGGTAAAATCGAAAAACGGAAAATTTGAAAATATACAAAT
s cb4.chrX              10848885  44 + 21540570 ---------------------------------------cGGGTTCTTT-----AGatt-------------------------------------------------------------aaaaacacaaaatttcaaaaaattcaatt
i cb4.chrX              I 12 C 0
s caeJap4.Scaffold18194   680999  75 +   823664 ------------------aaaaattaaaaaaaat-----tgatgtgtttgtgaaaaatt------------------------------------gtcaaaatgagC-------------AAAAGTGTGTAATTTTGAAGTATGTAT--
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeSp111.Scaffold626    103599   0 -  1189296 C
e caeRem4.Crem_Contig0   2254542  42 -  4500979 I

a score=-312.000000
s ce10.chrX              5504406 104 + 17718866 TGTCGAAATTGTATACACGATTTTTTTGCAACCTAACATAAATAAAGTAGCATAAAACTAAAATTGCCATAAAATTTACC---ACTTTTTCCTGCTCTATTTGGGAA
s caeJap4.Scaffold18194   681074  75 +   823664 TTTCAAGGTtgtttcaataattttgtcg-------------ataaa-----attaacgaaaacttttaaaaaaatacatcgGTACTTTCTC--------------GA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e cb4.chrX              10848929   0 + 21540570 C
e caeSp111.Scaffold626    103599   0 -  1189296 C
e caeRem4.Crem_Contig0   2254542  42 -  4500979 I

a score=-5272.000000
s ce10.chrX              5504510 168 + 17718866 TATTTCTTGTATCTAGTCTTAAAAAGTTTTCATGATGTGTTCAGTTTTGTAGTTAAAATCATAAAAGATTTGAATTGTTGTTGACATTTTTATTGTTTGTCGCCTACACCTGGCTCTCACGGAATCATGGATCCTCATTCTTAAAAAGATATTCCCAAATTTTCAAAA
s cb4.chrX              10848929 120 + 21540570 tatttaTTGTTCATAATAATTTAAAG----CATTGAGTATTCATCATCATTcttagaataaaaaaaaa---gaaacgt--------------aCGTTTGAAGCTTC---------------GGATCAT-GAtggtgttttttgaa-----------aaacgtcaaaaa
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18194   681149  83 +   823664 TATTTTGTGA--------------------CATT------------TTATTGTTAGATACATAATTgccacaaatttt---------tttcaacgttt------ta---------------aaataat-----------tgcgaa-----------aaatttcaaaa-
i caeJap4.Scaffold18194 C 0 I 16
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeSp111.Scaffold626    103599   0 -  1189296 C
e caeRem4.Crem_Contig0   2254542  42 -  4500979 I

a score=-658.000000
s ce10.chrX              5504678 44 + 17718866 TTGTCCTTTTCTATCTCGTTTCCGTTTCCCATTTTTCTCATTTA
s cb4.chrX              10849049 30 + 21540570 GAG--------------GTTCCAATTTCTAGTCAGGCTTTTTAA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeJap4.Scaffold18194   681232 16 +   823664 I
e caeSp111.Scaffold626    103599  0 -  1189296 C
e caeRem4.Crem_Contig0   2254542 42 -  4500979 I

a score=-1744.000000
s ce10.chrX              5504722 15 + 17718866 -------GAAACAAACTTTTGG
s cb4.chrX              10849079 15 + 21540570 ---GCACCAAACAGGCT----G
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    103599 15 -  1189296 aaaacagaaatcagG-------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeJap4.Scaffold18194   681232 16 +   823664 I
e caeRem4.Crem_Contig0   2254542 42 -  4500979 I

a score=-4338.000000
s ce10.chrX              5504737 28 + 17718866 ATTTCTTATTTTTGAACAGTATACTCAA
s cb4.chrX              10849094 24 + 21540570 GTATC----TTTCGAACAATGTTTGAAA
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold626    103614 15 -  1189296 -------------AAATTAAGAGTATAA
i caeSp111.Scaffold626  C 0 I 4
s caeJap4.Scaffold18194   681248 13 +   823664 -------ATTTTTTAGTTCT--------
i caeJap4.Scaffold18194 I 16 C 0
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeRem4.Crem_Contig0   2254542 42 -  4500979 I

a score=0.000000
s ce10.chrX              5504765 1 + 17718866 A
e caePb3.Scfld02_0       3781411 133 +  4147112 I
e caeJap4.Scaffold18194   681261 0 +   823664 C
e cb4.chrX              10849118 5 + 21540570 I
e caeSp111.Scaffold626    103629 4 -  1189296 I
e caeRem4.Crem_Contig0   2254542 42 -  4500979 I

a score=280301.000000
s ce10.chrX              5504766 640 + 17718866  
s cb4.chrX              10849123 595 + 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2254584 655 -  4500979  
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold626    103633 583 -  1189296  
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3781544 631 +  4147112  
i caePb3.Scfld02_0      I 133 C 0
s caeJap4.Scaffold18194   681261 695 +   823664  
i caeJap4.Scaffold18194 C 0 I 212

a score=9521.000000
s ce10.chrX              5505406 116 + 17718866 TACTTCTACTTCTACTTGCATGAAACACCTCTAATGGAGAGAGAAGC-------ACGATGAG--------GAA--------------AGGGTGTGTAAAGCAAAAAAAGT--ATGAGCAGGTGCAAAAC----------------AGAGATA--GAAAAGTA-------TGA
s cb4.chrX              10849718  89 + 21540570 -----------TAGTTTGT----AACACCTCTAATGAA-GGAGAT---------CTGGTAGACT------GAG--------------AGGGAA---AATGAGAGAGGAGTAAATGAGCAGGCGCATTTG-------------------------GGGTAGAA----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2255239 131 -  4500979 ---TCCTACTTCAGTTTGT----AACACCTCTAATGGA-AAAGCCGGA------TTGGAAGACTacgagaaaa--------------agggga---aaggaAAGAATGGGAAGCGAGCAGGTGCAAATGAGAACCCTAAAAAAGAACAGATGGTGGAAAAAA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    104216 133 -  1189296 CACTTCTACTTCAGTTTGT----AACACTTCTAATGGA-AGAGAAGTTGAATT-CTGGCATA--------AAAGAGGTCTGTAGGACAGGAAATG-AGTGAGAAGAGGGCAAATGGCCAGGTGCAAATG------------AGGAGCAGATG--GAGGGAAA----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3782175 119 +  4147112 CACTTTTACTTCAGTTTGT----AACACCTCTAATGGA-AGAGAAGCAGGATTGATGGTATA--------AAG--------------AGGgaact-ggagaaaaaagagataatgAGCAGGTGC--------------------AGTAAATA--GAATAATAATTAGGA---
i caePb3.Scfld02_0      C 0 I 526
e caeJap4.Scaffold18194   681956 212 +   823664 I

a score=4144.000000
s ce10.chrX              5505522 14 + 17718866 GACAATGTGGTAAA
s cb4.chrX              10849807 12 + 21540570 AACAATGTGGGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2255370 14 -  4500979 GACAATGCGGGAAA
i caeRem4.Crem_Contig0  C 0 I 196
s caeSp111.Scaffold626    104349 14 -  1189296 AACAATGCGGGAGA
i caeSp111.Scaffold626  C 0 I 202
e caePb3.Scfld02_0       3782294 526 +  4147112 I
e caeJap4.Scaffold18194   681956 212 +   823664 I

a score=515.000000
s ce10.chrX              5505536 63 + 17718866 ACATCAAAACATGGATTTATTCTAGAATAAAAAGAAATTAATTAGTAGCGAAACCCCCAAAAA
s cb4.chrX              10849819 52 + 21540570 ACATCTGCAGAGGg--------cagaattgagaaaaatgagggaGCATCT---CCcttaaaaa
i cb4.chrX              C 0 I 129
e caePb3.Scfld02_0       3782294 526 +  4147112 I
e caeJap4.Scaffold18194   681956 212 +   823664 I
e caeSp111.Scaffold626    104363 202 -  1189296 I
e caeRem4.Crem_Contig0   2255384 196 -  4500979 I

a score=0.000000
s ce10.chrX              5505599 924 + 17718866  
e caePb3.Scfld02_0       3782294 526 +  4147112 I
e caeJap4.Scaffold18194   681956 212 +   823664 I
e cb4.chrX              10849871 129 + 21540570 I
e caeSp111.Scaffold626    104363 202 -  1189296 I
e caeRem4.Crem_Contig0   2255384 196 -  4500979 I

a score=300.000000
s ce10.chrX              5506523 1 + 17718866 C
s caeRem4.Crem_Contig0   2255580 1 -  4500979 C
i caeRem4.Crem_Contig0  I 196 C 0
s caePb3.Scfld02_0       3782820 1 +  4147112 C
i caePb3.Scfld02_0      I 526 C 0
e caeJap4.Scaffold18194   681956 212 +   823664 I
e cb4.chrX              10849871 129 + 21540570 I
e caeSp111.Scaffold626    104363 202 -  1189296 I

a score=1133.000000
s ce10.chrX              5506524 5 + 17718866 TAGAA
s caeRem4.Crem_Contig0   2255581 5 -  4500979 TACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    104565 5 -  1189296 TATAA
i caeSp111.Scaffold626  I 202 C 0
s caePb3.Scfld02_0       3782821 5 +  4147112 TTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   681956 212 +   823664 I
e cb4.chrX              10849871 129 + 21540570 I

a score=8675.000000
s ce10.chrX              5506529 11 + 17718866 AATGTGTGTAT
s caeRem4.Crem_Contig0   2255586 11 -  4500979 AATGTGCGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    104570 11 -  1189296 AATGTGCGTAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3782826 11 +  4147112 AATGTGCGTAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   682168 11 +   823664 AATGTGTCTAT
i caeJap4.Scaffold18194 I 212 C 0
e cb4.chrX              10849871 129 + 21540570 I

a score=113016.000000
s ce10.chrX              5506540 321 + 17718866 AATTGTAAATAAAATAGAAACATGTGCA---AAAAGTGTGGC------------CGCGATTTTT----------GCGATCCCATCAGAGCATCAAGTCTGTCCGAGATTAGCACGAGGAGGCT---------CACTTTTTCATTTTCT--CCGGACGGAATTG-A----GAAGCGATAGATGAATGGTTGAGAAGCAACGCAACGCGGAGTGTACCAGAGAATTGGAAATAGAG--AGTT---GAT-CT-GTC----CCCCGGCG-GG--AAGAAGC-----------TAACCTT--CGGG-------------------AAGATGAGAATAATCGAAT-----GCGGCAAA----GAGACAC-------------------GAGGA--TTGATG---TGTGCGTG------AGTGAGTATGCT--------------CTATCTGTTCGTTTCACACATT-------T
s cb4.chrX              10850000 378 + 21540570 AATTGTAAATTAAACAGAAACATGTGCA---AAAAGTGTGGTCCCAGCGTCGGACGCGATTTTTGCCGCC----CCGAT----------ATAC--GCCTGTCCGAGATTAGTACATGACGACGGAGAGCGCTCACTCTTTCATTTTCTGGACACGCGGAATTGAA----GAAGCGATAGATAAAT-GTTGAGA----ATG----GCGGG----------------AGAAGTGAGTTAGTT---GATCCTGGAC-------------GG--GAGAAGCAAGATGAAAAGTAACCTC--CCGAGACACACGGGAGGAAGTAGAAAA-GAGAATAATCGAAT-----GTGGCTAGTAGTGGGGGGCACCGGGGTGGGAGATTTTCGAGTC--TTGTTG---TATGTGTGTGAGTCTGTGAGTACGTTGTGTG-GACCT---CTATCTGTTCGTTTCACACTTT-------C
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig0   2255597 329 -  4500979 GATTGTaaataaaacagaaacatGTGCA---AAAAGTGTGGC--------------CGATTTCTCCCCCCTCCTTCGATCCCATCACAGAGTC--GTCTGTCCGAGATTAGCACGAGG--------------ccctctttcattttct--ccggACGGAATTG-A----GAAGCGATAGATAAAT-GTTGAGAAACGATGCAACGCGGA----------------GAGGATGA---AGTT---GATCCT-GCC-------------GG--GAGAAGC-----------TAACCTT--CC------Cgcgacagagagagagaga-gagaataatCGAAT-----GTGGCTAA----GAGAGACACGGGG----------TTTGAGAA--TTGATG---TGTGCGTG------AGTGAGTATGCTCCGGGAGAGGT---CTATCTGTTCGGTTCACACTTT-------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    104581 339 -  1189296 GATTGTAAATTAAACAGAAACATGTGCA---AAAAGTGTGGC--------------CGAtttttttC-----CGGCGATCCCATCAGAGAGTC--GTCTGTCCGAGATTAGCACGAGGc-----g-------ctctctcttctttcct--ccGGACAGAATTG-A----AGAGCGATAGATAAAT-GTTGAGAAACGATGCAACGTGTA----------------GAAGGAAGG--AGTT---GATCCT-GGCgggaagcagaagaag--aagaagc-----------tgctCCT--GCGA----CACG-----------GAAA-GAGAATAATCGAAT-----GTGGCTAA----GAGAGACAACTG-------GAGGTTAGAGAG--CTGATGTGTTGTGTGTG------CGTGAGTATGCTCCTCC-GAGGGGTTATATCTGTTCGTTTCACACTTT-------T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3782837 349 +  4147112 GATTGTaaataaaacagaaacatGTGCA---AAAAGTGTGGC--------------TGATTTTTGCCGCT--AGTCGATCCCATCAGAGTGTC--GTCTGTCCGAGATTAGCACGAGGCAAGAGg-------ctctctttcattttct--ccggACGGAATTG-A----GAAGCGATAGATAAAT-GTTGAGAAACGATGCAACGCGGA----------------GAGGAAAGG--CACTCTAGAT-TT-GCTGGGGTCCCG----GG--AAGAAGC-----------TAACCTC--CCGA-------------------GACA-GAGAATAATCGAAT-----GTGGCTAA----GAGAGACACGGGG-----AGAGGTTAGAAGAGTTTGATGTGTTGTGCGTG------AGTGAGTATGCTCTCAG-GACGG---CTATCTGTtcgtttcacattttttcgatgt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   682179 283 +   823664 GATtgtaaataaaacagaaaCATGTGCGTGCCAAAATTTGGA--------------CGA-----------------------------GCGTCTGATCTATCCGATATTAGCACGAGG--------------CGCTTGCTTTCTTTCG-GACGTAAGGAATTA-AGACGGACGCGAcggatgaat-g--aatgaatgaatgaatgttGA----------------GAAAGAAAA--TGTC-------CC-GGG-------------AGCTGAGTAGT-----------TGGGCTCGGCCGA--------------------AGG-AAGGGTGATCGGATCGCGGGTGCTGGA----CAGGGATGTGGGA----------ATGAAGAG--GAGACG---------AG------CGTGAGTATGCT--------------CTATCTGTTCGTTTCACACTTT-------T
i caeJap4.Scaffold18194 C 0 I 1764

a score=577.000000
s ce10.chrX              5506861 13 + 17718866 CACATCAAATGAT
s cb4.chrX              10850378  9 + 21540570 G----AATGTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2255926 13 -  4500979 GATGTAAAATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    104920 13 -  1189296 CATATCAGATGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3783186 13 +  4147112 taCGCCAAATGAT
i caePb3.Scfld02_0      C 0 I 402
e caeJap4.Scaffold18194   682462 1764 +   823664 I

a score=2652.000000
s ce10.chrX              5506874 14 + 17718866 -AATGTCAAAGGGTG
s cb4.chrX              10850387 14 + 21540570 -GACACCAAATGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2255939 14 -  4500979 -AACGTCAAATGATG
i caeRem4.Crem_Contig0  C 0 I 212
s caeSp111.Scaffold626    104933 12 -  1189296 AGACGTCGAATG---
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I

a score=-439.000000
s ce10.chrX              5506888 47 + 17718866 ---ATCAGTGAAAAAAATATGTGGGATTTTTTACA-ATTATTTTCTGAAAA
s cb4.chrX              10850401 46 + 21540570 TCTATTGCACCGGAAGATTTATGTTatcttgtgtt-ttttttttttg----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    104945 35 -  1189296 ----------------ATGTGTAATATTTGGtgttaatcattttttgataa
i caeSp111.Scaffold626  C 0 I 249
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeRem4.Crem_Contig0   2255953 212 -  4500979 I

a score=118.000000
s ce10.chrX              5506935 188 + 17718866 AAGTTCTAGAAAACGAGTCGTGATGACCAAATATAACAGCAAAAAAATTGAAAATTGTTTCTAAACTTTTCATGTTTTTTTTAAATT---------TCCAAGAAAATTTAAAACTGAATTATTTTCAAATTTTTGCGCTGACAAATTACCTGGCAGTTTCTACTTCAATGGGGTTTCTGGTTTTCAGGTTCAAAATT
s cb4.chrX              10850447 152 + 21540570 -------agtaaaagAATAGCgctcaaaaaaagcaaaagaatgaaaattgagg--------tgaaaaatcaacgaatatttaaaatCAGTAGTACATAGAAGTAATTTTAAACCT------CTTTCAAATCCAT-CAATTACATTTTAGCTGACA-----TGCTTAGAT------------------GTTCAGAATG
i cb4.chrX              C 0 I 39
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    104980 249 -  1189296 I
e caeRem4.Crem_Contig0   2255953 212 -  4500979 I

a score=0.000000
s ce10.chrX              5507123 56 + 17718866 CAATTTTTCACATTCTTGTACATTTTTCGGAAAATAATTCTGTTTTCTCGGCAAAA
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e cb4.chrX              10850599 39 + 21540570 I
e caeSp111.Scaffold626    104980 249 -  1189296 I
e caeRem4.Crem_Contig0   2255953 212 -  4500979 I

a score=-1917.000000
s ce10.chrX              5507179 536 + 17718866  
s cb4.chrX              10850638 425 + 21540570  
i cb4.chrX              I 39 C 0
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    104980 249 -  1189296 I
e caeRem4.Crem_Contig0   2255953 212 -  4500979 I

a score=-2548.000000
s ce10.chrX              5507715 47 + 17718866 ------AACATCAAAGGAAAACGGAACG--CATTTTTCACACAGATTTTTCACTT
s cb4.chrX              10851063 22 + 21540570 ------gcCGTCacgtgaagaaaaaaaa---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2256165 52 -  4500979 AATATTATAgtgaaatggaaagaagagaTTCCACTTCTAGACGGAATTCCCA---
i caeRem4.Crem_Contig0  I 212 C 0
e caePb3.Scfld02_0       3783199 402 +  4147112 I
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    104980 249 -  1189296 I

a score=-1433.000000
s ce10.chrX              5507762 31 + 17718866 TTTCCATTTTATTCCAAAAGATGCATTTGGA-----
s cb4.chrX              10851085 29 + 21540570 -------catatttggaatgtgaaaagagaagagaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2256217 30 -  4500979 ------TCccatttcaacaaaaaaagaaggagcaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3783601 31 +  4147112 TTCCGATCACATTCTAAAAAAGGAGGAAGCG-----
i caePb3.Scfld02_0      I 402 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    104980 249 -  1189296 I

a score=72327.000000
s ce10.chrX              5507793 334 + 17718866 -----GACGTCACGCGGAATAGTCTATAGGAGATGGAAaaaagaagagaaa-----------------agaaaacagaaaaaaagaagaagaaGAAG---ATGCACATTAT-AGGAAATGTTGAAGCGTGAGAATAAGCAAAAAT---GAGTTGGTTTCA--------------------------------AGGCGATGACACGCAATACAAGAGGCTTGCTA-TAAAAATTAGGA-------AGAGCGCCTGGCATGCTTCCAAATTGCCTCTGTGCT---CCAACTGAACACATA-CACCAAACATGAGGGAAG-----CGATGCC-----AACGTGAGCTCG----CC--CCGGCGAC----------ATATCGATTTTTG----TGCCTCGCCATTTTCATTTCTCTC-CATATATTCCGG----TTTTCAACCACC
s cb4.chrX              10851114 366 + 21540570 aaag----------agaaaaa--------------aacaacaaacgagtaa-----------------aaaataagggagaaaaaatgtaaaaaaag---atGTGCATTAAGGAAAAATGTAGAAGCGTGAGAATACACAAATAGTAAGAATTTCGTGTCACCAACAACTCCATGAatagaagaaacagaagaagacaTAAAAGCCAAT--------TTCAATGAAGGAATTGCGGGGTGGTGCATGTCAGTTGGCATGTTGCCAATTTGTTTTCGCAGTTTGGCAACTGAAC----A-CACCAAATATGAGAGGCG-----AAATGC--------CGTGAGCTCC----CCCTCTAGC--CCTCTCACGTTGTATCGATTTTCGGTGCcactttgtcatttttcattttcacgtctggattccggttttttttcaaccact
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2256247 338 -  4500979 aaagggacgtcagaagaaaaa-catatgtgggatgaaaaaaagagaagaaa-----------------aacacacaagagcaaaaaagagaaagaag---atgcacattaa-aagaaatgtaagagCGTGTGAATACACAAATAG---AAATTGGCCGCCACTA----------------------------AAGACAAGAGAG---AT--------CTCaatg-agcatttttgggaGAG---AAGTCAATTGGCATGTTGCCAATTTGTTTTCGCA--TTGCCAACTGAACACATA-CACCAAATATGAAAGAGG-----CATTGCCAACCCGACGTGAGCTCG----CC--CCAGC--C----------GTATCGATTTTTG----TGCGTCgccattttctatttt-ac-tcCATATTCCGG---TTTTTCAACCAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    105229 324 -  1189296 -----gacgtcacaaaaaatagcacataagggatgtaaaaaaaagaagaaa------------aaagaaaaacaggaggaaaacaacgagaaaaaaatagatgcACATTAG-AGAAAATGTAGAAGCGTGAGAATACAC-----G---AAAGCCAACAAC--------------------------------GAGACAGAATAAGATTC--------Cctctcg-aaaaa---tagg-------gaatGAATTGGCATGTTGCCAATTTGTTTT-GCTCTTTACCAACTGAACATA---CACCAAATATGAAAGGGAGGG--CGATGCC-AACCAACGTGAACTCG----CC--CCCGT--C----------GTATCGATTTTAG----TGTCTTGCCATTTC--------AC-GCCATATTCCGG---TTTTCCAACTACC
i caeSp111.Scaffold626  I 249 I 543
s caePb3.Scfld02_0       3783632 337 +  4147112 -----GACGTCACAAGGAATAGCACATatgggatgaaaaaaaaagaagaaagaaaaaaataagaaaaaaaaacagaagcaaaacagaaagagagaaa---atgcacattag-agaaaaTGTAGTAGCGTGAGAATACACAAAtag---aaattgagtttt--------------------------------gagagaga-----------------cccaatg-aaaaattttggg-------aaatgaaTTGGCTTGTTGCCAATTTGTTTT-GCTCTTTGCCAACTGAACACATACCACCAAATATGAGGGGGGAGGAAAAATGCC--ACCGACGTGAGCTCTCACCCT--CCCGC--C----------GTATCGATTTTCG----TGCCTTTACATTTC--------AC-TCCATATTCCGG---TTTTTCAAAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I

a score=12255.000000
s ce10.chrX              5508127 173 + 17718866 ACCTTGCGTGCGCGTACGTGAAATGGAAAAAAAAAACTTCAGACAATACAGACAATAACACGGCGGTCTGTTATTATTT-GACTGCTACTGTCGTTCTCGTTACGCTTGAAGTAGATGAGA-------------------TTCCGGTCTAAATGTAGAAAAAGTGGCTGACGAGG---TTTAGAGGAAATTGGAAA-------------
s cb4.chrX              10851480 170 + 21540570 ATCTAGCGTATTC-------------CCGCAAAAGACTttaaagaaaacagaaa----aacagcAATCTGCTATTATTT-GGCTGTCAATGCCGTTCTAGTTATACCagagaacaaaaagaaatacTGAGAAAGGAGATATTCAGGTTTCAAAGTGG-CAAATTAGCTGTAGAGATAGTTTTCGTGAAG--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2256585 157 -  4500979 --CTAGCGTGCGCGTA----------CGGGACAAGACTTCATACAATACAGAAGAC--AACAACAGTCTGTTATTATTTCGACTGTCACTACTATTCACGTTCCgctatagaaaaaaaaga------------------------gtttcaaaGTGG-TGGAATCGTTGAAGAGGGGTTTTTGATGAACGCGAAAA-------------
i caeRem4.Crem_Contig0  C 0 I 262
s caePb3.Scfld02_0       3783969 164 +  4147112 ACCTAGCGTGCGCGT-----------AGTTGAAAGACTTCAGAC--------------AATGACAGTCTGTTATTATTT-GGCTGCCactactgtttt--ttttgttac-gaTTGAAAAGA------------GACGAGATTTGGTTTCTGAAGTAG-AGACGTGAGTGAAGAGG---TCTTGGTGGCCGTataaaaaaatgtgggaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    105553 543 -  1189296 I

a score=-5401.000000
s ce10.chrX              5508300 162 + 17718866 ---TGCTAATTAATCATATTAGACTACTATTTGTTATATTTCAAAA-----TAAAAACGTATGGAACGTGTGAGCTGAAAAAGGTTGGAATACTATTAAAGAAACTTAT-----------GTTTTTCAAAATTATAACAAACATTTTAGGGTACTTGTGTATTCAATTCATTTTAAAAAAA
s cb4.chrX              10851650 179 + 21540570 TGGTATGGAACAGCCATTCCTTATGAGAGTCTTTCAACATTGAAAAGTAagcaaatatttcaaaaatttgtcaattgataaaatgtttcccgttatttcagcaatttttcataGGTTGtggatttttaatatttttaca--gatttgaaaataattgagtgagaaaatcattgaataaaaa
i cb4.chrX              C 0 I 110
s caePb3.Scfld02_0       3784133 118 +  4147112 ---ttttgaaaaatcatttct-------gtctttttgttctgaaaacggCACAAAAA-------------------GCTAACATCTTTCATGTGAATtcc-cacttttt----gaattttgacgtTGAATCTTTTCACACTTATTTGAATTC-----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    105553 543 -  1189296 I
e caeRem4.Crem_Contig0   2256742 262 -  4500979 I

a score=-4420.000000
s ce10.chrX              5508462 627 + 17718866  
s caePb3.Scfld02_0       3784251 417 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e cb4.chrX              10851829 110 + 21540570 I
e caeSp111.Scaffold626    105553 543 -  1189296 I
e caeRem4.Crem_Contig0   2256742 262 -  4500979 I

a score=-623.000000
s ce10.chrX              5509089 21 + 17718866 AAACTAAGTAAGCTCAAAAAT
s caeRem4.Crem_Contig0   2257004 21 -  4500979 AAACTAGGAAACGTAATAaat
i caeRem4.Crem_Contig0  I 262 I 1
s caePb3.Scfld02_0       3784668 18 +  4147112 GAATT--GAGACCTATTTAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e cb4.chrX              10851829 110 + 21540570 I
e caeSp111.Scaffold626    105553 543 -  1189296 I

a score=-6349.000000
s ce10.chrX              5509110 60 + 17718866 AACTTTTAAAAAAACTTTTCAACAATTTCAT----TCT-CATAA--------AAAAC-GGAGACCTGTTAAACA-------------
s cb4.chrX              10851939 78 + 21540570 AACtcccaaaaaatt-----aatgattttat----tttccaaaaaagaacttagtttttgaagaatacTGAAAATATCAACTAACAA
i cb4.chrX              I 110 C 0
s caeRem4.Crem_Contig0   2257026 53 -  4500979 aactctgaaaaattt----------cctTAT----TCTACAGGA--------GGtgt-----aaatacaaaaaaaattga-------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3784686 68 +  4147112 AATTTACGAAGAAAT----------TCTTGTAAAATTTGCAGAc--------agcaa-taaaaaatagaaagtaaACGTTATAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I
e caeSp111.Scaffold626    105553 543 -  1189296 I

a score=19577.000000
s ce10.chrX              5509170 335 + 17718866 GATTCATTA----AAGGCAGACATGAAAAGGT--GGTATCATCAAGTG-------A----AGTTTCGACATTGATAACAC--TAATAAACCCTATAGAATGTTTGTTTTCATAAACGACACTCA-----------CTTTTTTAAAATTCAAAACAG--TATTTTGGGTAAACAGAAGAAACACGTTAGAGATGTAGAT-GGAAAAGAAAAATACA-GAGGGAAGA-------------AGAAATGTCGTCAAAAGTTACGATGTGCATATA--TAGGATGAGAGGAAATGGG--TTTTTTTC--GGCTGTTCTAGGAAA--AGAAAAAAG------AATGACTGAAAAACAA--GGCTACGTCACT---ACTTCACA---------CAAAAAT-------GTAGAAATAGTAGCCGG
s cb4.chrX              10852017 355 + 21540570 GATTCgttattgcaaaaaaagcgAGATAAAACGCGCCACCGCCAGGTTCACACGCA----A-------CAATGATAACAAATTGATAAACTCTGT-GATGggtgttttttaaaataattccTACACCAGTACACAGTTCTTTGT-----ATAACAGTAACTTTTTGGTAAACA--AGAAACTGGAAAACAGTAGAAAA-GGGAAGGATGAAAGTA-AATAGAAAGATACACACAGA--AGAAAAGTCGTCAAAAGTTATGATGTGCATATAAGGG----GAAAGCGAGTGTA--tttttttCCGAGACGTTCTAGAAAT--GCAGA-----------------GAAAAACAG---GCGACGTCATT----CAACAAAAGAGcgaaacgaaatt-------ttcaaaaaaccgacgGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2257079 342 -  4500979 -attcatta----GAGACAGACGAAATAA---GCGGTATTATCAAGTG---GCGCA----GT----TCTACTGATAACAA--TGATAAACTTCAT-CAAcgattgtttttaaaaacgtCTTTAC---------CTGTTTCTTGA-----AAACAAG--ACCTCACGGTAAACA--TCATAGTCGGGAGaactggaaaa-ggaga-----aaaccG-AAAGAGAGAAGATACACAGA--AGAAAAGTCGTCAAAAGTTACGATGTGCATATA--TG----GAAAGCAAATGTG--TTTTT---CCAGAGGTTCTGGAAAT--GTGAAGTGA-------ACG---GAGAAATGG--TGATACGTCACt-agacaaagaaaaagaaaaataagaattaagacattgaaaaaagtgagaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    106096 309 -  1189296 gattcatta----aagaaaa--------------aatgttatcaACTA---GTGAGGTTTGTATTCTGAACTGATAACAT--TGATAAATGTCTT--------------------------Tac-----------ctttcttca-----aaataat--ttcttgaagata-----tgaaatgcagtagaaactgaaaatgaaaaggaagaaaaga-aggagaagaagaaacacaTC--AGAAATGTCGTCAAAAGTTATGATGTGCATATA--TG----GATAGGCAAAGTGTTTTATTTTCCTGGGTGTTCTggaaaa--gggaaggaa---tgggaagaa-gaaagaaagaaatcgacgtcact----ctggggaaaaa-----caaaaag-------tcgAA-----TGAGTAG
i caeSp111.Scaffold626  I 543 C 0
s caePb3.Scfld02_0       3784754 337 +  4147112 GATTCATTATG--AAGAGAAACG-----------AGTATTATCAAATT---GAAAG----ATACTATGAACTGATAAGAT--TGATAAACCCCTT----gggtgttttcaaaaaacgg---taT-----------GTTTCTTGA-----AAACAGT--CTTTTCGAGTAAACAT-TCaaaaacgggaggaactgaaaa--aatagagagaaaggagaggaagggaaaagctacagcagagaaaTGTCGTCAAAAGTTATGATGTGCATATA--TG----GATAGGAAatgtgaatgtttttttgggaCGCCctggaaaagtggaaaagaaaATCGGAACGGC-GAGAAAATG---TTTACGTCactgaaactgcaaaaaaa---actgagatt-------ttgaA----------GG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   682462 1764 +   823664 I

a score=168208.000000
s ce10.chrX              5509505 239 + 17718866 ATAGTTCAAAGCACGTCGACGACAGTTTG-CCAGTAATTCGAGCGCACTTCGTAGTGACATGTTG-TCTCGGGG---AGCACAGTGTTGT---CTCT-GCTAATGCCGTGACAACTGGTGCGACGCGGAGAAAAACGAGACATGTACGTGGCGGTCCTCTTCTTCTT--CTTCCTGCTCTCGGCA--------CAAG-------AACTCTCCGACGCGGCA------CCCGAAACATGCTTTAAACATTGGGAGAGATCACCCAG------CTCATT
s cb4.chrX              10852372 262 + 21540570 ATAGTTC-AAGC---ACGACTACAGTTTGACTAGTAATTCGAGCAGTAATCGTAGTGTCATGTCGATC---GGGAGTAGCACAGTGTTGTGCCCCGTGGCTAATGCCGTGACAACTGGTGCGACGCGGAGAAAAACGAGACATGTACGTGGCGgtcctttcttctttttcttcttcatcagaGCAGAGCTTCTGTGA-------GAAACCCCGAGGCACCA-GCCACCCCGAAACATTCTTTAAACATTGGGACGGATCACCCAGACTCTCCTCATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2257421 225 -  4500979 ataGTTCTAAGC---ACGACGACAGTTTG-CCAGTAATTCGAGCGCTATCCGTAGTGACATGTCG-TC---GGG---AGCACAGTGTTGTGCTCT---GCTAATGCCGTGACAACTGGTGCGACGCGGAGAAAAACGAGACATGTACGTGGCggtcttcttctcttt-------------gagAA--------ACGG-------AGAACCCGGACGCGGCA---CCTCCCGAAACATGCTTTAAACACT-GGAGAGATCACCCAG------CTCATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    106405 229 -  1189296 AAAGTTCAAAGC------ACGACAGTTAG-CCAGTAATTCGAGCACTATTCGTAGTGACATGTCG-TC---GAG---AGCACAGTGTTGTG--CCGT-GCTAATGCCGTGACAACTGGTGCGACGCGGAGAAAAACGAGACATGTACGTGGCGGTCTTCTTCTC----------------GAGCT--------GAGAAAGCGGCGGAATCCCGACGCGGCACCCCACTCCGAAACATGCTTTAAACATT-GGAGAGATCACCCAG------CTCATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3785091 239 +  4147112 ATAGTTCAAAGCACGACGACGACAGTTTG-GCGGTAATTCGAGTACTATTCGTAGTGACATGTCG-TC---GGG---AGCACACTGTTGTGCCCCGT-GCTAATGCCGTGACAACTGGTGCGACGCGGAGAAAAACGAGACATGTACGTGGCGGTCTTCTTCTCTGT-------------GAGAA--------ACGGAGCTGCCGGACTCCCGACGCGGCA--CCACCCCGAAACATGCTTTAAACATTGGGAGAGATCACCCAG------CTCATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   684226 216 +   823664 ATAGATCAAAGC---ACGATAACAATTTG-GCAGTAATTCGAGAGCTATTCGTAGTGACATGTCG-CCTGGGAG---GCCACACTTTTGTG--CTGG-GCTAATGTCGTGACAACTGGTGCAAC-----GAAAAACGAGACATGGACGTCGCGGTCTTCTTCCTTCT--CCCCTTGAGCTGAGAA--------ACAG-----------------CGTAGGA-----------AACATGTTTCCAACACT-GCGGCAATCACTCGG------CTCGTT
i caeJap4.Scaffold18194 I 1764 I 10592

a score=73080.000000
s ce10.chrX              5509744 232 + 17718866 CGCAAAACGC-GA-GATGGGGTCTCGCTC----TTCCTTTGTGTCGTCGTTTTTTTTTTATGACAAGCGGATAGTAGG--TTT----------------CGAGAGTGGACTGTTGCAGTTTT------CGGTTGCGAGG---TTTGACAAATGTGAATTGAATCTGCGGGTTGGGGG-GGGGGGGGGGGACACACACATCGCAGAAAAACGGAAATATGATAGATCACCAAT----------GCGACTGGCATTTTGTTAGGTTG---CTTTAAAAAAC
s cb4.chrX              10852634 231 + 21540570 CGTTAAA-GC-GA-GATGAGGCCTCAACT----CGTGTGTG----------ACTTTTTTATGACGAGCGGATAGGGGG----TTCGaagagagaaatgaaaaaaatggactgTTGCAGT-----------TTCGGGCggttttttgataaatgtGAAT----TCTGCGTCTACAACTGGGGTATAGTG-------ACACCACAGAAAAGCGGAAATAGGATAGATCGGTTTT--CCGACCACCCGATGGCAATTCTATTAGGTTTTGTct---aaaaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2257646 224 -  4500979 -GCTAAA-GT-GA-GTTGGGGTCTCCAGTATTCTTTCTGTG----------ACTTTTTTATGACGAGCGGATAGTGGG----T----------------AGAGAGTGGACTGTTGCAGT-------CGGGTTGGCGTGG---TTTGACAAATGTGAATTGGGTCTGCGTCTCCAGTT-TGGTATGGTG-------ACATTGC-GAAAAGCGGAAATATGATAGATCGGCGGA--CCGACTACCCGATGGCAATTCTATTAGGTTTTATCccgaaaaaac
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    106634 235 -  1189296 CGGAAAA-GCAGTCGATGGGGTCTCTTTT----TCGCGTTG----------ACTTTTTTATGACGGACGGATAGTGGGGTTTT----------------TGAGAGTGGACTGTTGCAGTTTCGGGGAGGGTTAGCGTGG---TTTGACAAATGTGAAATGAGTCTGCGTCTCCGGGT-AAGTATAGTG-------ACAATCCAAAATAGCGGAAATATGATAGATCGGCAGTCCGTGACTACCCGATGGCAATTCTATTAGGCCAA--CTCTAAAAAAC
i caeSp111.Scaffold626  C 0 I 214
s caePb3.Scfld02_0       3785330 211 +  4147112 CGAGAAC-TC-GACGATGGGGTCTCAACT------GCTCTG----------ACTTTTTTATGACGAGCGGATAGTGGG----T----------------TGAGAGTGGACTGTTGCAGTTTT---TCGGGTTCGCGTGG---TTTGACAAATGCGTA-----TCTGCGTCTCTGGGT-AAGTATTGTG-------ACATTGCAGAA-AGCGGAAATATGATAGATCGGCGGT----------CCGACGGCAATTCTATTAGGCCAAGCCACaaaaaaac
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold18194   684442 10592 +   823664 I

a score=-32377.000000
s ce10.chrX              5509976 213 + 17718866 AATTTTGAGGGGATCAATAATATTTTAAACAGCAAAGACT--GAAAAATGGGTTAAAGTTTTTTCTTTTTTTAATTGTCTTATATTGTAAAAAAATTTC----------------------------AGGAAAATACT----------------------------TTTTTGGACCATTG--GCAATTTTTAAACAATG---------------------------------------------------------------------TTTAAAACTCCTTTTCTAAATTTTATTTTTCGATGAAACCGACATGTTTTTATATTTT-------GACACAGAAAAAATTG-------
s cb4.chrX              10852865 147 + 21540570 -----------------------------cacaaaaaatt--cGACGA------------------------GAAAGATTACCAGTGTAATTAAACTTTT---------------------------GGGAGGGTTTT----------------------------GCTTCGA---AGAgcgagaattcgaaaattatt------------------------------------ccAGCTAACA-----------------------TGTgaa--------ta------------------------attgaatttgaacttctattt----tttgc-GCTAGAGTCGTTCGCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2257870 112 -  4500979 -----------------------------cacaaaaaaac--cGAAGA------------------------TTTTGCCACCGAGTGTAATTAAACTTT------------------------------GGTGGTGTC----------------------------ACTT------------GGGgttccaaaacattt---------------------------------------------------------------------tttgaa--------------------------------------agtttaaacACCACT------------AATACACATGTTTGTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3785588 317 +  4147112 AACTTTGGCGGTGTCAGATGGtcttttgacagaaaaaaacattaaaaa------------------------acaaGCAGCTCATCAAAATGAGTCCTGTGGATCATGTCTCTCTCTCCAGGAATTGGGGAtggttcctgaaaaaattgaacctaCAATAGAATAAACTTCAAGTTAATCAAATAATTCCAAACTGATTATAAATGCTTTCCAGACATTATCTCTAGCTGATTATCCACCTAATAATGAAAACTGGCGTTGTCAGATTTGTGAA--------TAGGATAGTAATCATCAGAGGAAATCATCACGTTTTAATGTCTTCTTGAACTTCACAAATAGAATTG-------
i caePb3.Scfld02_0      I 47 I 75
e caeJap4.Scaffold18194   684442 10592 +   823664 I
e caeSp111.Scaffold626    106869 214 -  1189296 I

a score=-3225.000000
s ce10.chrX              5510189 38 + 17718866 T---------AATAAGTGTGTGGTATTATTTAATTTTCTCGTTTATT
s cb4.chrX              10853012 35 + 21540570 TGTGGAATTAATTGATCCAGGG------TTCAAGCTG------TACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2257982 19 -  4500979 T---------AATGATTTAGTG---------AGGCTG----------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3785905 75 +  4147112 I
e caeJap4.Scaffold18194   684442 10592 +   823664 I
e caeSp111.Scaffold626    106869 214 -  1189296 I

a score=-60299.000000
s ce10.chrX              5510227 350 + 17718866  
s cb4.chrX              10853047 337 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258001 140 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3785980 455 +  4147112  
i caePb3.Scfld02_0      I 75 C 0
e caeJap4.Scaffold18194   684442 10592 +   823664 I
e caeSp111.Scaffold626    106869 214 -  1189296 I

a score=16748.000000
s ce10.chrX              5510577 27 + 17718866 GCTGTAATTGTTGTGACCAAC------GGGCGA
s cb4.chrX              10853384 32 + 21540570 -CTGAAATTGTTGTGACCAGTGATCGAGgatga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258141 26 -  4500979 -ctgaaaatgttgtgaCCGAC------GGGTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    107083 27 -  1189296 GCTGCAATTGTTGTGACCGAC------GAGTGA
i caeSp111.Scaffold626  I 214 C 0
s caePb3.Scfld02_0       3786435 26 +  4147112 -CTGCAATTGTTGTGACCGAC------GGGTGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   684442 10592 +   823664 I

a score=78880.000000
s ce10.chrX              5510604 95 + 17718866 AAAAGTAAAGGATGGTCAGAAATCTTGAAAGGT--GAAAACGTCAGAACAACTGTCAGCTGCAGAGTGGACATGTTTTCGAGATGAGTTATTGGGTA
s cb4.chrX              10853416 89 + 21540570 aaaaattgtggatGGTCGAAAAGATCGA-------GAACCCGTCAGAACAGTTGTCAGGTG-AGAGTGGACATGTTTTCAAGATGAGTTATTGGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258167 92 -  4500979 AAAAGTAAAGGATGGTCGAAAATCCTGAAGGAT--GGAAACGTCAGAACAGTTGTCAGTT---GAGTGGACATGTTATCGAGATGAGTTATTGGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    107110 92 -  1189296 AAAAGTAAAGGATGGTCGAAAATCTTAAAGAGT--GAAAACGTCAGAACAACTGTCAGTT---GAGTggacattttttcaagatgaGTTATTGGGTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3786461 92 +  4147112 AAAAGTAAAGGATGGTCGAAAATCTTGAAGAGT--GGAAACGTCAGAACAACTGTCAGTT---TAGTGGACACGTTTTCGAGATGAGTTATTGGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   133187 96 -   823664 aaaaaaaaatgatagtCGAAAGTTGTGAGAGGTTACGAAACGTTCGAACAACTGTCAGGCACCGAG-GGACATGCTTTCAAGATGAAGTATTGCGTA
i caeJap4.Scaffold18194 n 10592 I 224

a score=12433.000000
s ce10.chrX              5510699 19 + 17718866 ATAATGTCTCGAGAGCTTT
s cb4.chrX              10853505 19 + 21540570 ATAATGTCTGATGAGTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258259 19 -  4500979 ATAATGTCCGATGAGCTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    107202 19 -  1189296 ATAATGTCTGCTGAGCTTT
i caeSp111.Scaffold626  C 0 I 21
s caePb3.Scfld02_0       3786553 19 +  4147112 ATAATGTCTGGTGAGCCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I

a score=2103.000000
s ce10.chrX              5510718 16 + 17718866 TGT--T-----GGGTCGCTTCAC
s cb4.chrX              10853524 18 + 21540570 -----CACAGAGAGTCGCTTTAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258278 13 -  4500979 -----T-----GAGTTTCTTTAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3786572 18 +  4147112 TTTCCT-----GAATCACTTTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I
e caeSp111.Scaffold626    107221 21 -  1189296 I

a score=-784.000000
s ce10.chrX              5510734 14 + 17718866 AT-------------TGAGTTTTTCTT
s cb4.chrX              10853542 27 + 21540570 GCTTCGATaaaagattaaaattttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258291  9 -  4500979 GT------------------TTTCCTT
i caeRem4.Crem_Contig0  C 0 I 414
e caePb3.Scfld02_0       3786590  0 +  4147112 C
e caeJap4.Scaffold18194   133283 224 -   823664 I
e caeSp111.Scaffold626    107221 21 -  1189296 I

a score=859.000000
s ce10.chrX              5510748 62 + 17718866 --TAGCTTATGTAAAATGCTCATTAGGAGAGAAACGCTAAATTGTTACATTAGTCTGTTAAAAA
s cb4.chrX              10853569 64 + 21540570 actgatttaAGAATGAATCAAATTGagcgaaaaatgtttttttttgacacttgaatgttcaaaa
i cb4.chrX              C 0 I 525
e caePb3.Scfld02_0       3786590  0 +  4147112 C
e caeJap4.Scaffold18194   133283 224 -   823664 I
e caeSp111.Scaffold626    107221 21 -  1189296 I
e caeRem4.Crem_Contig0   2258300 414 -  4500979 I

a score=0.000000
s ce10.chrX              5510810 1075 + 17718866  
e caePb3.Scfld02_0       3786590    0 +  4147112 C
e caeJap4.Scaffold18194   133283  224 -   823664 I
e cb4.chrX              10853633  525 + 21540570 I
e caeSp111.Scaffold626    107221   21 -  1189296 I
e caeRem4.Crem_Contig0   2258300  414 -  4500979 I

a score=1406.000000
s ce10.chrX              5511885 21 + 17718866 TTTTTTTTCACGGATCTTAAA
s caeSp111.Scaffold626    107242 21 -  1189296 ttttttttctcgaatctGAAA
i caeSp111.Scaffold626  I 21 C 0
e caePb3.Scfld02_0       3786590  0 +  4147112 C
e caeJap4.Scaffold18194   133283 224 -   823664 I
e cb4.chrX              10853633 525 + 21540570 I
e caeRem4.Crem_Contig0   2258300 414 -  4500979 I

a score=161.000000
s ce10.chrX              5511906 3 + 17718866 ACT
s caeSp111.Scaffold626    107263 3 -  1189296 ggt
i caeSp111.Scaffold626  C 0 I 14
s caePb3.Scfld02_0       3786590 3 +  4147112 GCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I
e cb4.chrX              10853633 525 + 21540570 I
e caeRem4.Crem_Contig0   2258300 414 -  4500979 I

a score=35.000000
s ce10.chrX              5511909 42 + 17718866 CTACTTCTTT---TTTCAGAATGATTTTTTTAAATGATCAACTTC-------
s caePb3.Scfld02_0       3786593 52 +  4147112 TTATTCCTCCAGCCTCGAGAGTTATCTTTTTTGATACTCTTCCTCTTTCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I
e cb4.chrX              10853633 525 + 21540570 I
e caeSp111.Scaffold626    107266 14 -  1189296 I
e caeRem4.Crem_Contig0   2258300 414 -  4500979 I

a score=-295.000000
s ce10.chrX              5511951  8 + 17718866 -----AACCTGAA
s caeSp111.Scaffold626    107280  8 -  1189296 -----gacttgat
i caeSp111.Scaffold626  I 14 C 0
s caePb3.Scfld02_0       3786645 13 +  4147112 AACCAGAAACGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I
e cb4.chrX              10853633 525 + 21540570 I
e caeRem4.Crem_Contig0   2258300 414 -  4500979 I

a score=3810.000000
s ce10.chrX              5511959 80 + 17718866 TTCAGTTGGTTAAAATTTATTCAT-----GAAA---------TCG--TTTGCCCACAAAGCTTT-----GGTTT-----TAAAAGCG-GAGATTGAAAA------TGTAATGG-
s caeRem4.Crem_Contig0   2258714 87 -  4500979 TTCAatctttcagaatttatt--g-----GTAAGA-------TAA---TATCCCACAAAGCAGT-----ATTTC-----AAAAGAGTTcagattgaagaagaaaaaaaaacagt
i caeRem4.Crem_Contig0  I 414 C 0
s caeSp111.Scaffold626    107288 91 -  1189296 ttcaatcattcaaaatttattcgGTTTTCGAAAGCATAAAGGTGG---------ACAAAGCTTT-----GTTTTTTATATAGAAACGTGAGATTGAAAA--------GATTGG-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3786658 92 +  4147112 Ctcaatcattcaaaatttattcag-----gAAAGC-------TGGAttttttatacaaagctttttcaagtttttttggaaatggtgtgagattgaaaa---------attag-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I
e cb4.chrX              10853633 525 + 21540570 I

a score=611.000000
s ce10.chrX              5512039 4 + 17718866 TTTT
s cb4.chrX              10854158 4 + 21540570 TTTT
i cb4.chrX              I 525 C 0
s caeRem4.Crem_Contig0   2258801 4 -  4500979 catC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    107379 2 -  1189296 --TC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3786750 2 +  4147112 --tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133283 224 -   823664 I

a score=136807.000000
s ce10.chrX              5512043 321 + 17718866 ATGC------ATTTAGTAGGCGAGGATGACGTAGCAAGCGTAGATGATGCCTGGAATGTATCCCAGGATGGTGAGCAGAATGCAGATGGCGAGATGGTAGTCACAGCCCTTCTCCAGAAAAACTCCGATTGGCTGGAA-----ACAAT--------TTTTTAGTTTTCAATT---------------TCATAAATAAT-------------CTACTTACTGGGAGAAGAACGGCGCAGATGAACTTTGGAATGTCGGTGCAGGTAAGAGCCATGTTGAAACAGAGATT---GGTAGTT-------TCTG--------GAAACTGG----------------ACTGATTT---------GTATGTGAAGCGAGA-------------------------------------------TGTGGAAGTT-------TTCACGAAATGAAGAGAAAAGGGCAACA
s cb4.chrX              10854162 384 + 21540570 CATC------GTTTAATAGGCGAGGATGACGTAGCAAGCGTAGATGATTCCTGGAATGTATCCGAGAATGGTGAGAAGGATGCAGATGGCAAGATGGTAGTCGCATCCCTTCTCTAAGAAGACTCcaactggctgaaaattc-aaaatatgtaCTTGTTATAGTTTTCACGG--TGActataaataaataaaacta---------------AAACTTACTGGAAGAAGAACAGCGCAGATGAACTTTGGAATGTCGGTGCAGGTAAGAGCCATGGCG-AACAGtagttttcagaagttttaagaaactg--------aaaaac------------------tcaaattt-------------gaaaaaattacaaagagaaacaagctatttttcagagaaaa------agatgcaaaGGTGAagg-------gaaatggaagaaatgaaAGTGGAGGACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2258805 400 -  4500979 AGTC------GTTTAGTAGGCGAGGATGATGTAGCAAGCGTAGATGATGCCTGGGATGTATCCGAGAATTGTGAGAAGGATACAGATGGCAAGATGATAGGTGCATCCCTTCTCCAAGAAGACTCCGATTGGcttaaaagaagaaaataag-------tttagtCTTCACTT-CTGAGAACAAAGATCTGAATATAG--------------AAACTTACTGGGAGAAGAACGGCGCAGATGAACTTTGGAATGTCGGTGCAGGTGAGAGCCATGGCG-AACAGAAGTt------agtttt-----actg--------aaaaataatcattttatAACGTTATCAAAATT---AGA---GAGCGAAAAAGTTGAGGAAAGGAAGGAAGTGCATTTACGAGAAAGTATATCCGATGGGGATGTAtgtg-------gaaatgaataaaatagaaGAGGCCAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    107381 373 -  1189296 AAAT------GCTTAATAGGCGAGGATGATGTAGCAGGCGTAGATGATTCCTGGGATGTATCCGAGAATCGTGAGCAAGATGCAGATGGCAAGATGGTGAGTGCATCCCTTCTCCAAGAAGACTCCAATTGGCTGAAACGCTTTCAATAag-----gttttgttttcaagatGAAGAATGGATCAATCTGGAAATG---------------AAACTTACTGGGAGAAGAACGGCGCAGATGAACTTTGGAATGTCGGTGCAGGTGAGAGCCATGGCG-AACGGAAGTT------AGTTAG-----TCTG--------AAGTATATCAATGTTTG---------AAA------AGGGTTGAATGAAAGGAGAGATGAAAAGAGGACGACTACTCTCGGAG-----------------AGTGAAATTG----------GTGAGAATGCTGAgggagaatgaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3786752 416 +  4147112 aaATGTAT-AGTTTAATAGGCGAGGATGACGTAGCAAGCGTAGATGATTCCTGGGATGTATCCGAGAATAGTGAGCAAGATGCAGATGGCAAGATGGTAGTCACATCCCTTCTCGAAGAAGACTCCAACTGGCTGTAA-------ATTGA---------TTATTTAATACTTGTAGaatagaaatttctggaaatgagt--TACTAGAAATAAACTCACTGGAAGAAGAACGGCGCAGATGAACTTTGGAATGTCAGAGCAGGTTAGAGCCATGGCG-ATTGGAAGTG------AGTtag-----tttgtctgaaaaaaatatgtttgtttttgt------tcaaattttataaaatagaaggaaaaaagagagcaaaaagaGGCGGCAAGCTTTGAAGTG--------AAATGCCAGGGAGAATGCTGACAGAGtatgaaaaaagtgggcggggttGAAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   133507 311 -   823664 ------ATGAAACTAGTAGGCAAGAATGACGTAGCAAGCATGGATGACTCCTGGGATGAATCCAAGAATGGTCAGAAGAATGTTGATGGCCAGGTGATAAGTGCAACCCTTCTCCAGAAATACTCCTACTGGctgaaa-------attaa----------tatattACATTT-----------------GAAGCTATATTCTGTT------TGACATACCGGGAGAAGAACTGCGCAGATGAACTTTGGAATGTCGGAGCAGGTAAGAGCCATGGCGGAGTGATAGTC------A----------ACAG--------AGAACTG-----------------TAAAAATA---------CATTGAAAACA-----------------------------------------------TGTTGACGTA-------TTGacaaaacaactaaaaaagagaaata
i caeJap4.Scaffold18194 I 224 I 1357

a score=-1573.000000
s ce10.chrX              5512364 41 + 17718866 GGA--------------CGTTTCCATGGTAAT--TTGAAAAACAAGATTGTCATGGG
s cb4.chrX              10854546 57 + 21540570 AAGCGAGGCGGAGAAGATGTATCCATGGGAATGTCCCGAAAACAAAATCACTATGGG
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   2259205 57 -  4500979 GCATGAGGCGGGGCTAACGTCGCCATGGGGATGGCAGAAAACGGCAAATGTCATGGG
i caeRem4.Crem_Contig0  C 0 I 51
s caeSp111.Scaffold626    107754 30 -  1189296 aaa------gaag---------------------gcggAGACTGGAGATGCGGCCCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3787168 51 +  4147112 AAA------GAGGCTCGCATCTCCATGGAAATTAgcggaaaacagaaaagtcatacg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133818 1357 -   823664 I

a score=87.000000
s ce10.chrX              5512405 10 + 17718866 ----AATTATGAAA
s caeSp111.Scaffold626    107784 14 -  1189296 CTATCACCATGGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3787219 14 +  4147112 acgaaatgaaaaaa
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10854603 37 + 21540570 I
e caeRem4.Crem_Contig0   2259262 51 -  4500979 I

a score=-854.000000
s ce10.chrX              5512415 44 + 17718866 ATTTTCATCTTTGGTTTTTAAGTTTGATGCTTGAAGTTTGACTA
s caeSp111.Scaffold626    107798 25 -  1189296 AT------------------AGTATAGT-CATGCGATTTCGTGA
i caeSp111.Scaffold626  C 0 I 6
e caePb3.Scfld02_0       3787233 38 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10854603 37 + 21540570 I
e caeRem4.Crem_Contig0   2259262 51 -  4500979 I

a score=41.000000
s ce10.chrX              5512459 16 + 17718866 AACAAC--GAGCCTAA----CG
s caeRem4.Crem_Contig0   2259313 18 -  4500979 AGCAAC--Gtgctttgattt--
i caeRem4.Crem_Contig0  I 51 I 1
s caeSp111.Scaffold626    107829 16 -  1189296 AGCGACGAGCGCTATG------
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3787271 14 +  4147112 AGCAAC--GCGCTTTG------
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10854603 37 + 21540570 I

a score=-3321.000000
s ce10.chrX              5512475 375 + 17718866  
s cb4.chrX              10854640 401 + 21540570  
i cb4.chrX              I 37 I 1003
s caeRem4.Crem_Contig0   2259332 451 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    107845 398 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3787285 408 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133818 1357 -   823664 I

a score=846.000000
s ce10.chrX              5512850 4 + 17718866 GCAT
s caeRem4.Crem_Contig0   2259783 4 -  4500979 ACAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    108243 4 -  1189296 aaat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3787693 4 +  4147112 GTAT
i caePb3.Scfld02_0      C 0 I 3138
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10855041 1003 + 21540570 I

a score=-886.000000
s ce10.chrX              5512854 10 + 17718866 GTCCACAATT
s caeRem4.Crem_Contig0   2259787  7 -  4500979 ---GACAATT
i caeRem4.Crem_Contig0  C 0 I 3804
s caeSp111.Scaffold626    108247  2 -  1189296 -------at-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3787697 3138 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10855041 1003 + 21540570 I

a score=1291.000000
s ce10.chrX              5512864 267 + 17718866 ATGAGTAACCGAAAAGCGGCCAAGCGACTATGAGATTAGTTTTAAAACCTTGTGACTTTTCGT-----------ATTTTAGTAGTATGCTCTACCAAATTATGATATCAAAGAAAATGGTTCAAACCG----GAAGAATTCTGGAAATGTCCTCAATCAAAAATATGCAGATATATTTATATGCATATTGTTGTTGATTGTTTTCTCTTCGCTAGGGGAACACATTTGTCATACTGGCCAAAGACCACTCGAGGAA-----CGGAAACCATAGATTAAATGATTTAT
s caeSp111.Scaffold626    108249 245 -  1189296 ---agtTGCC-AGAAGTAACCATTCTGC-------TTTCTTTCCGTATTTTGTGTCGGTTTATATAGCAATTCAATTTCCGCAATGTGATTGATCAATTGATAATGTCAAAAACAG------AAGCTGTgttgaaatatt-tgaatagaTTCGTCATAAACAACACGTTGTTTTGTTCATATG------ACCCCAGAACGTTCGCTCTTC----------------TGTCATAAAGACCAGAGACCA--CGAGGAAATATGAAGCGACCACAAATCAAGGTATTTGT
i caeSp111.Scaffold626  C 0 I 2011
e caePb3.Scfld02_0       3787697 3138 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10855041 1003 + 21540570 I
e caeRem4.Crem_Contig0   2259794 3804 -  4500979 I

a score=0.000000
s ce10.chrX              5513131 1256 + 17718866  
e caePb3.Scfld02_0       3787697 3138 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10855041 1003 + 21540570 I
e caeSp111.Scaffold626    108494 2011 -  1189296 I
e caeRem4.Crem_Contig0   2259794 3804 -  4500979 I

a score=4737.000000
s ce10.chrX              5514387 163 + 17718866 TGTTTGCCGCGGCAGAATGGGGCAGAAATTGTTGG--------TGGAGTAAAGAGAGAGATAGAACAGCAAGTCAGAATGCA--ATCTCCGCCCTATTCTTTCATGTGTGCGCTCAGTAAACAATTTATTGTTTCTTCAAACGCTGAGTAATACCTT-------ACTTTAATTTCGCAAT
s cb4.chrX              10856044 161 + 21540570 TGTTTGTGACAGGAGAA--------AAATCGCTGGCATAGGGatgaaaacaagagaaa-agaaaacagagaGTCAGAAGGCACCATTTC-------TTTTCTCATATGTGCGCTCAGCAAACA--CTACTGTTTC-TCTAACACTGAGTAATACCTTGAAAGTAGCCGTAATTTCACAAT
i cb4.chrX              I 1003 I 173
e caePb3.Scfld02_0       3787697 3138 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e caeSp111.Scaffold626    108494 2011 -  1189296 I
e caeRem4.Crem_Contig0   2259794 3804 -  4500979 I

a score=0.000000
s ce10.chrX              5514550 231 + 17718866 TTTTTAAAGGCTTGACTCATAAAGGTTTTGATGTTATGAAAAATATCTAAAGTTTAGAAATGAAAAATAAACGCTATTTGGTTTTTTTGTTAGTAAAATATTGCTGAAATTTTTAGAGAAATTAATTAAGAAATTTTCAATAAAGTCATTCGGAAATTTATTCATGAATATGTGCCCGCAGAGCTTCGGTAAATGTACATGAGATTTGCAATTAGAAGAATAAGTAATGGA
e caePb3.Scfld02_0       3787697 3138 +  4147112 I
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10856205 173 + 21540570 I
e caeSp111.Scaffold626    108494 2011 -  1189296 I
e caeRem4.Crem_Contig0   2259794 3804 -  4500979 I

a score=182.000000
s ce10.chrX              5514781 2 + 17718866 AA
s caePb3.Scfld02_0       3790835 2 +  4147112 AA
i caePb3.Scfld02_0      I 3138 C 0
e caeJap4.Scaffold18194   133818 1357 -   823664 I
e cb4.chrX              10856205 173 + 21540570 I
e caeSp111.Scaffold626    108494 2011 -  1189296 I
e caeRem4.Crem_Contig0   2259794 3804 -  4500979 I

a score=726.000000
s ce10.chrX              5514783 2 + 17718866 TT
s caeRem4.Crem_Contig0   2263598 2 -  4500979 TT
i caeRem4.Crem_Contig0  I 3804 C 0
s caePb3.Scfld02_0       3790837 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   135175 2 -   823664 tt
i caeJap4.Scaffold18194 I 1357 C 0
e cb4.chrX              10856205 173 + 21540570 I
e caeSp111.Scaffold626    108494 2011 -  1189296 I

a score=67666.000000
s ce10.chrX              5514785 152 + 17718866 TAATAGGCAAGAATGATGTAACAGGCGTAGATGATTCCGGGAATGTAGCCGAGAATTGTGAGCAGAATGCAGATGGCGAGGTGATGGGTGCAGCCTTTCTCGAGGAAGACACCAACTGGCTG---CAAAAT--GAGGCA----TGAGTTGGAGTTGGAGTA----
s caeRem4.Crem_Contig0   2263600 142 -  4500979 TAGTAGGCAAGAATAATGTACAACGCGTAGATGATTCCTGGAATGTATCCGAGAATTGTGAGCAAAATGCAGATGAGAAGATGATTATCGCATCCTTTCTCCAAAAAGACTCcgattggctg----aaaat--ga---------gaacttGAG----TTCA----
i caeRem4.Crem_Contig0  C 0 I 1754
s caeSp111.Scaffold626    110505 143 -  1189296 TAGTAGGCAAGGATGACGTAGCAAGCGTGGATGATTCCTGGGATGTATCCGAGGATGGTGAGAAGAATGTTGATGGCCAAGTGGTAGGTGCATCCCTTCTCCATCCAGACTCCGATTGGCTGGaacaaaac--------------aatcaaaa----actg----
i caeSp111.Scaffold626  I 2011 I 2
s caePb3.Scfld02_0       3790839 146 +  4147112 TAGTAGGCGAGGATGACGTAGCAAGCGTGGATGATTCCTGGGATGTATCCGAGAATGGTGAGAAGAATGTTGATGGCCAAGTGGTAGGTGCATCCCTTCTCCATCCAGACTCcgattggctg----aaaatttgg---------gaatcGAAACT--GTTA----
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   135177 154 -   823664 TAATAGGCGAGAATGACGTAGCAAGCGTGAATAATTCCTGGGATGTAGCCGAGAATGGTGAGGAGGATGTTGATGGCCAAGTGGTAGGTACATCCTTTTTCCATCCACACTCCGATTGGCTG-----AAAT--AAAGTATTAGTTTGTTAAAG----TCTATgta
i caeJap4.Scaffold18194 C 0 I 11
e cb4.chrX              10856205 173 + 21540570 I

a score=27753.000000
s ce10.chrX              5514937 82 + 17718866 --------TTGGGCT--ATGTTTT-------------------TAACTTACCGGGAGAAGAAGAGCGAAGAGGAACTTCGGGATGTCCATGCAAGTAATAGCCATTCTGGA---
s caeRem4.Crem_Contig0   2265496 88 -  4500979 --------------------ttatgatatggatctggaaagaaaaactcactggaAGGAGAATAGCGAGGAGAATCTTTGGAATGTCGCTGCAGGTAAGAGCCA---TGGT---
i caeRem4.Crem_Contig0  I 1754 I 1047
s caeSp111.Scaffold626    110650 79 -  1189296 --------CGGAACT--CTTTTGT-------------------TATCTTaccggaagaagaagggcgCAGAGGAACTTTGGAATGTCGGTGCAAGTGAGAGCCA---TGGC---
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3790987 82 +  4147112 --------TCGAATTAACATTTAT------------------AAAACTTACTGGAAGCAGAAGAGCGCATAGGAACTTCGGAATGTCGGTGCAGGTGAGAGCCA---TGGC---
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   135342 93 -   823664 ttaagttctgaaattgtttttttt------------------aattcttacCGGGAGAAGAAGAGCGCACAAGAATTTTGGAATGTCGGTGCAGGTAAGAGCCA---TGTCGGA
i caeJap4.Scaffold18194 I 11 C 0
e cb4.chrX              10856205 173 + 21540570 I

a score=598.000000
s ce10.chrX              5515019 31 + 17718866 -----------GCT--GAGAGGAGGAGTTTTGGGATTCTGAAAT
s caeSp111.Scaffold626    110729 26 -  1189296 -----------GTTAGCAGAGAAGATGt----agtttctga---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3791069 29 +  4147112 -----------GTTCGGAGAGCAGAGAA----GGTTTCTGAAAT
i caePb3.Scfld02_0      C 0 T 513
s caeJap4.Scaffold18194   135435 39 -   823664 ACGAGGTGAAGATTCGGATAAGA-AAGT----GGTTTCTAAAAT
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10856205 173 + 21540570 I
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=526.000000
s ce10.chrX              5515050 16 + 17718866 TAATGAGAAGTTGAAA
s caeSp111.Scaffold626    110755 15 -  1189296 -aataataaattggaa
i caeSp111.Scaffold626  C 0 T 541
s caeJap4.Scaffold18194   135474 13 -   823664 ---GAATATAATGAAG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e cb4.chrX              10856205 173 + 21540570 I
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=342.000000
s ce10.chrX              5515066 5 + 17718866 AGATT
s caeJap4.Scaffold18194   135487 5 -   823664 GGATT
i caeJap4.Scaffold18194 C 0 T 316
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e cb4.chrX              10856205 173 + 21540570 I
e caeSp111.Scaffold626    110770 541 -  1189296 T
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=0.000000
s ce10.chrX              5515071 319 + 17718866 TTAAAAAATCAATTTTGAAAATAAATAATTTGAGATGTAAATCAGAAAACATTAAGAAACAATTCATTAATAGGAGCTAACTAGGAATTAGTAGAGGAATAACTAACAAGTAAAAACTAATTAGGAACTAATTATGGACTAACTAGGAATTAACAAGGAAAAAATTGAAATTACCAGGAACTAACTAGGAATTATTTGGAACTAACTGGGATCTTAAAAGAAACTTGAAAAGCCATACTTTATTTTATACATACTACTATACTTTAAGTGACTTCCATTGCCATCTAATAAAAACTAAAAAAAGCTTCTACCTAAGCGG
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e caeJap4.Scaffold18194   135492 316 -   823664 T
e cb4.chrX              10856205 173 + 21540570 I
e caeSp111.Scaffold626    110770 541 -  1189296 T
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=3538.000000
s ce10.chrX              5515390 218 + 17718866 GAGAGAGAAAAAAATGAACCAGAAATGTATGAAAAAGAAGACATCTTCAAGCAGATATATACAGCAATAAATAAATGATCATAGGTCAACTGACTGGTT----AAAAATGGGCGG--TCCGTGGTGTTAGGGGGCCAC---CCAATGTTTGGTGTTTGAGCTCTTATAGTTGGAAAAACAAAACAACAACCCAGCGACATATATCACAAATAGACAACCCAACAATA
s cb4.chrX              10856378 184 + 21540570 ggaaggaagaaaaacgaa----gaatgGGCAGAGAAGAAGACA--------------------ACAATAAATAAAAGACCATCGGTCAAGTGACTGGTTGTGGGAAAAGGGGCGGACTTTCTGTCCTCAGGGTCCCATGGAGTAATCTTTGATGCATGAGTTGTCATTGGTA-------------------CATAGAAGTATCACACAAACGGAGTAACCATCAATA
i cb4.chrX              I 173 I 597
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e caeJap4.Scaffold18194   135492 316 -   823664 T
e caeSp111.Scaffold626    110770 541 -  1189296 T
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=0.000000
s ce10.chrX              5515608 934 + 17718866  
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e caeJap4.Scaffold18194   135492 316 -   823664 T
e cb4.chrX              10856562 597 + 21540570 I
e caeSp111.Scaffold626    110770 541 -  1189296 T
e caeRem4.Crem_Contig0   2265584 1047 -  4500979 I

a score=922.000000
s ce10.chrX              5516542 61 + 17718866 AAAAAACATCACGTCACTATTTTCC-----------------CGTCGCTCTCACCTTCTGTCAACATTAGTAAATAGA
s caeRem4.Crem_Contig0   2266631 77 -  4500979 AAAGAAACTGTCGTCACTATTTtccatttctgtttttctctgcgtttctttC-CAACCTGTGAACAGTAAAcaatcta
i caeRem4.Crem_Contig0  I 1047 C 0
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e caeJap4.Scaffold18194   135492 316 -   823664 T
e cb4.chrX              10856562 597 + 21540570 I
e caeSp111.Scaffold626    110770 541 -  1189296 T

a score=775.000000
s ce10.chrX              5516603 19 + 17718866 TTTTT------TTCGTTCCAAATGT
s caeRem4.Crem_Contig0   2266708 25 -  4500979 ttttcaattctttttctccattcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    110229 19 -  1189296 ttttc------ttttttcaatatgg
i caeSp111.Scaffold626  T 541 I 6
e caePb3.Scfld02_0       3791098 513 +  4147112 T
e caeJap4.Scaffold18194   135492 316 -   823664 T
e cb4.chrX              10856562 597 + 21540570 I

a score=360.000000
s ce10.chrX              5516622 4 + 17718866 AATG
s caeRem4.Crem_Contig0   2266733 4 -  4500979 CGTG
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    110254 4 -  1189296 GAAG
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3790585 4 +  4147112 AATG
i caePb3.Scfld02_0      T 513 C 0
e caeJap4.Scaffold18194   135492 316 -   823664 T
e cb4.chrX              10856562 597 + 21540570 I

a score=-1818.000000
s ce10.chrX              5516626 255 + 17718866 TTACGGTTCATTTCTTT------------TTTCTCATATTCAATTCAGTGACTCAGTGTTACTT-----------GTTCGTACCTTTATTCGTTTACAGAGAAGGAAATGGATGAAATTCAGTTCAACATAAAGGTAAC-TAAATCAC----GAGAAATTG------------AA--------ACCAATATTATGA---GATGATGG--GGAGATTT--------TTTGA--------GAGGAAAAG------AGCATTTGATTG----AAAAAAAGAATACG-ATCCGAATTGCTGATGATGG------CGTCATGATTGTGAAGCTTTGCATGATAAGC
s cb4.chrX              10857159 246 + 21540570 TTACGGTTCATTTCCTGACACCTCATCTTCTTTTCTGAGTCATATTG-TG-------GTTTCTT------------TTTGCTCCTTTATTCATACA---AAA------------CTGTTCACATCAACATAAAAGTGAC-AGAATCACATCGAGAAGATTG------------AAAGAT----GCCAATACTTTGAATAATTGGAGA--GGGGAGAtgatttttgttgga--------aaagtaatt---tttaaaagatgttTG----TGGT------TATG-Gcgtcaaaaaac-aagaatt------tgtG------------AGTTCCAAAGCAGAT
i cb4.chrX              I 597 C 0
s caeRem4.Crem_Contig0   2266744 251 -  4500979 TCTTGGttcattta---------------attttctgaat-atgttG-AGCCACTATGTTTcttcaatcttttttgttcgtttcttTATTCCGAGA---AAA------------GATTTCAATTCAATATAAAGGTTAC-AATATCACA---AGTTGATTG----CTTGGAATAGGTGT----ACCAATATTATGA------GATGG--GGAGAGAT--------TTTGA--------GAAGTGAacaaaattaaattatgaTGG----AG--------TACG-AT-TCGAAAATT-ATGACGT------CATGTTGATGGTGGCTGGTATCCGGACAG-T
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    110258 246 -  1189296 TTACGGTTCATTTCCTGAAATTG------ATATTCTTAGTCATGTCA-TG-------AATGCGT------------ATCGTTCCTTTATTCacacagagaaa------------aatttcaattcaacaTAAAGGTGACGAATATCac----ggaaaatgg-------------gaaatcgTAACCAACATTATGA---------GA--TGAGAGAT--------TTTAAAGAATGATGAAATGGAG------AATGTTTGATTG----CGGGAAggaatacatttttgaaatatt-atgACGTCGTGGTGATGGTGATTGGAGTTGGTGC----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3790589 249 +  4147112 TTACGGAACATTTCCC-AAGCTG------AGTCACTCAATCA--TCA-------------------------------CGTTCCTTTATTCGTTCATAGAAA------------TAGTTCGGTTCGAAATAAAGGtgacaaaaatcac----aaaagatTGGGGAATTGCA--AGGAATCGTAACCAATATTATGA---------GATTTGAGAGTT--------TTTAA--------GAAATGGAG------AATACGTTTTTGTAATTGGAAAGGAATACG-ATTTAAAATATT-ATGAAGT-GACGTCATGTTGATTGATGAATGTGCCATGATCAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   135492 316 -   823664 T

a score=145901.000000
s ce10.chrX              5516881 133 + 17718866 TTAGTAGGCGAGGATGACGTAGCAAGCGTGGATGATTCCGGGAATATATCCGAGGATGGTGAGAAGAATGTTGATGGCCAAGTGGTAAGTGCATCCCTTCTCGAGCCAGACTCCGATTGGCTG----AAAAT-----A---AGTT---
s cb4.chrX              10857405 130 + 21540570 TTAGTAGGCGAGGATGACGTAGCAAGCGTGGATGATTCCTGGGATGTATCCGAGAATGGTGAGCAGGATGTTGATGGCCAAGTGGTAGGTGCATCCCTTCTCCATCCAGACTCCGATTGGCT-----AGAAT-----A-----CC---
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   2266995 136 -  4500979 TCAATAGGCGAGGATGACGTAGCAGGCGTGGATGATTCCTGGGATGTATCCGAGGATGGTGAGAAGAATGTTGATTGCCAAGTGGTAAGTGCATCCCTTCTCCATCCAGACTCcgattggctg----aaaat-----agagatag---
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626    110504 137 -  1189296 CTAGTAGGCAAGGATGACGTAGCAAGCGTGGATGATTCCTGGGATGTATCCGAGGATGGTGAGAAGAATGTTGATGGCCAAGTGGTAGGTGCATCCCTTCTCCATCCAGACTCCGATTGGCTGGaacaaaac-----a---atca---
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3790838 138 +  4147112 CTAGTAGGCGAGGATGACGTAGCAAGCGTGGATGATTCCTGGGATGTATCCGAGAATGGTGAGAAGAATGTTGATGGCCAAGTGGTAGGTGCATCCCTTCTCCATCCAGACTCcgattggctg----aaaatttggga---atcG---
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   135176 140 -   823664 tTAATAGGCGAGAATGACGTAGCAAGCGTGAATAATTCCTGGGATGTAGCCGAGAATGGTGAGGAGGATGTTGATGGCCAAGTGGTAGGTACATCCTTTTTCCATCCACACTCCGATTGGCTGAAATAAAGT-----A---TTAGTTT
i caeJap4.Scaffold18194 T 316 C 0

a score=-9644.000000
s ce10.chrX              5517014 27 + 17718866 GTT--TAATT-----------TGATTTTTT-TTGAAAGATT------
s caeRem4.Crem_Contig0   2267146 17 -  4500979 GTT--GCACT-----------ATGAATTAT-----------------
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626    110647 17 -  1189296 gtTCGGAACT-------------CTTTTGT-----------------
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3790984 20 +  4147112 ATTTCGAATT-----------AACATTTATA----------------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18194   135316 34 -   823664 GTT--AAAGTCTATgtatttaaacattttt-----------aagttc
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10857535 30 + 21540570 I

a score=60086.000000
s ce10.chrX              5517041  90 + 17718866 ---------------TGAAACTTACTGGAAGAAGCAGAGCGCAGAGGAACTTTGGAATGTCGGTGCAAGTGAGAGCCATAGT---TGCA-ATAGTTGAGA---GTTCTGAAA
s cb4.chrX              10857565  90 + 21540570 ---------------TTCAACCTACCGGAAGGAGCAGAGCGCAGAGAAACTTTGGAATGTCGGTGCAAGTGAGAGCCATAGT---TGTC-G-AGATGAGCT--GTTCTGGAA
i cb4.chrX              I 30 I 1367
s caeRem4.Crem_Contig0   2267163  82 -  4500979 --------------------CTTactggaagaagaagagcgcAGAGGAACTTTGGAATGTCAGTGCAAGTGAGAGCCATGGC---TGCA-G-AGATGA-----GTTCTGAAA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    110664  92 -  1189296 -----------------TATCTTaccggaagaagaagggcgCAGAGGAACTTTGGAATGTCGGTGCAAGTGAGAGCCATGGCGTTAGCA-G-AGAAGATGtagtttctgaa-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3791004  92 +  4147112 -----------------AAACTTACTGGAAGCAGAAGAGCGCATAGGAACTTCGGAATGTCGGTGCAGGTGAGAGCCATGGCGTTCGGA-G-AGCAGAGAAGGTTTCTGAA-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   135350 105 -   823664 tgaaattgttttttttaattcttacCGGGAGAAGAAGAGCGCACAAGAATTTTGGAATGTCGGTGCAGGTAAGAGCCATGTC---GGAACG-AGGTGAAG---ATTCGGATA
i caeJap4.Scaffold18194 C 0 C 0

a score=910.000000
s ce10.chrX              5517131 1 + 17718866 A
s caeRem4.Crem_Contig0   2267247 1 -  4500979 a
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    110756 1 -  1189296 a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3791096 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   135455 1 -   823664 A
i caeJap4.Scaffold18194 C 0 T 1689
e cb4.chrX              10857655 1367 + 21540570 I

a score=-12509.000000
s ce10.chrX              5517132 41 + 17718866 -----TGCAATGTAA-----GTAAAA--------------------AGCC----AACG-----AAAAGCAAAAACGTAAG
s caeRem4.Crem_Contig0   2267248 39 -  4500979 -----tataaatttg-------------------------------aatttttgaata-----ataagaaaaaacaaaag
i caeRem4.Crem_Contig0  C 0 I 629
s caeSp111.Scaffold626    110757 71 -  1189296 -----taataaattggaatattcaaatg--gaaaagacGGGGTGTCAGGTTT--GACGGGTTCGGAAGGAAAGACTGAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3791097 43 +  4147112 -----TATATCCTTG-----TTCACG--------------------AGTTTC--GACG-----AGAAGGAACGCATAGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   133767 57 -   823664 TACATTGAAAACATG-----TTGACGTATTGacaaaac--------aact----aaaa-----aagagaaatacgtaaa-
i caeJap4.Scaffold18194 T 1689 C 0
e cb4.chrX              10857655 1367 + 21540570 I

a score=-3644.000000
s ce10.chrX              5517173 15 + 17718866 T-----GAATAAACGAGAAG
s caeSp111.Scaffold626    110828 15 -  1189296 G-----AATTATGGGAGTAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3791140 18 +  4147112 ATTAGCAAGAATGCGAGT--
i caePb3.Scfld02_0      C 0 I 1544
s caeJap4.Scaffold18194   133824 15 -   823664 --agaaaaagaaggaag---
i caeJap4.Scaffold18194 C 0 n 0
e cb4.chrX              10857655 1367 + 21540570 I
e caeRem4.Crem_Contig0   2267287 629 -  4500979 I

a score=-1032.000000
s ce10.chrX              5517188 442 + 17718866  
s caeSp111.Scaffold626    110843 464 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3791158 1544 +  4147112 I
e caeJap4.Scaffold18194   133839   0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeRem4.Crem_Contig0   2267287 629 -  4500979 I

a score=-11002.000000
s ce10.chrX              5517630 314 + 17718866 CATGTTTGCCTATGAAACTTGCTACCAAT----GGAGTCT------ACAATACTACT----AATATTACATGTTTTGAGAAAAAGGGTTTTCTGAGCAAACAAACGTTCAATCAAAAACAGTTTTGCACATCTCATTTCTATATAAAATTC---ACAACTGGCAATCAAA------------------------------------------ATGAGAT---------ACGAATAAAAACA-GCGT---AACGCTTTA--------------TGATAA---AAATCCATGGCAACCGGGAT-----TAGTGACT-------TCTCA------GGCCT--------------------GTCTAGTGA------------GGAGACGGAGAGGAATAGTCGAATT---------TGCCATTTGGTTTTGAAATGATTGGGGTTTGAGA----GAATAGC--------------GAACGAAAC-----------
s caeRem4.Crem_Contig0   2267916 361 -  4500979 CATGTTTGCATTTGAAATTTGCTACCAGC----AGAGTCC------ACTAGACAATCGTTTGGCATTATGTACTGCAAATAAAACG-----------TGACGAG---------AGAATAAGTCTCCGGCG--------------AGGACTTGTCTCGAATGGGAAacgaa------------------------------------------atgagaa-------------attgaaaag-gcgG---AGCCCATTACTGACACGCAATATCTATAA---CAATCCGTAGCGACGGGCACATAA-CATTGACG-------TGTCATTTTTGGATTAAATAAAAATACGAAAACAAGACCAAGAgatcaattgaaaatagagGCAGAAACAAAGAGCGGAGGT---------CACTACATGCCGTTG----GGTTGGGTTTTCTAA---CGATGAGCGTTGTCTtgaaagaaagtgaaattgATGGGAGAT
i caeRem4.Crem_Contig0  I 629 C 0
s caeSp111.Scaffold626    111307 394 -  1189296 -ATGTTTGTCTTTGAAATTTGCTACCAGCAACAAGAGCCCTCCCCTACTAGACACTC----GGCTCTATGTACTAAcaacaagaga-----------aaatgaa---------agaggtTGTC---------------------AAGCCTT---TCGAATGGCAATCGAGAATAGTGTGGGCGGGGCTGACACGcgatatctcaaaaaatccatgACAACCATATATGACTTATTGAAACGCACGGATTAAtcaaagaatgaaatgaaaagactAAAAAACCAGTTCAAGACCAGAAAAACATAATCGATGACGAAACGACTGCCA---TCGGGTTA--------------------ACCTAATGATCAGGGTTGAGtagaag-agaaacaattcAAGATGGCACTTGTTTACAACACACTTCGTCTCAACAATTTGACCTTCTAAACCCTACTAGC-------------AGAATGAAAC-----------
i caeSp111.Scaffold626  C 0 I 141
e caePb3.Scfld02_0       3791158 1544 +  4147112 I
e caeJap4.Scaffold18194   133839   0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I

a score=1928.000000
s ce10.chrX              5517944 62 + 17718866 GGCAGATTTC-----TTGTTTACAACGCAAAAGAGGGGGTGCTTGACATTGAAAATTTGACCTTCTT
s caeRem4.Crem_Contig0   2268277 64 -  4500979 GGCAAGTGTTTCGTGTTGTTTACAACCGATGA---GGAGTAGTTGAACTTGACGATTTGaccttctt
i caeRem4.Crem_Contig0  C 0 I 589
e caePb3.Scfld02_0       3791158 1544 +  4147112 I
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeSp111.Scaffold626    111701 141 -  1189296 I

a score=0.000000
s ce10.chrX              5518006 46 + 17718866 GCCGTTTTGCAGCGGGTTTTCAAAAAAATCTAAGAAAGGGAAAGAT
e caePb3.Scfld02_0       3791158 1544 +  4147112 I
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeSp111.Scaffold626    111701 141 -  1189296 I
e caeRem4.Crem_Contig0   2268341 589 -  4500979 I

a score=-633.000000
s ce10.chrX              5518052 197 + 17718866 ATTTTTTGACATA---ATAAGAGTC-------------------------AAACCGAAAAGTCACCTGATACGTGATTAACAAGC--------TTTCCGAGCGGAAGAAAATTTATTTTGGGAGCTGAGAAACTGAAGTTTAGACTTACAATATTATGA--AATAGCTAGCGCGGT--------GGAAACAGACTTAATCAGAATATAGAAATTGATTTCGTCTTTCTGCCTCGCTAAACAAT
s caeSp111.Scaffold626    111842 217 -  1189296 acttttcaacATACATAGAatagttttcagttgaacttcttctgttcaaaaaatcaaaagttcaagTGATTCACAAAATGCGAGCATAACTCATTCCCTAGCAACACGTGACTTTTT------GATTAGACAC------CTGGATATGCAAAATTGTGGTTGGTTGTCTACGCAGTCTATTTTGGCCAAAAAGCTGATTCTGGGTTCAGTGATGCATTTCGTAtt--------------caat
i caeSp111.Scaffold626  I 141 C 0
e caePb3.Scfld02_0       3791158 1544 +  4147112 I
e caeJap4.Scaffold18194   133839   0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeRem4.Crem_Contig0   2268341 589 -  4500979 I

a score=270.000000
s ce10.chrX              5518249 13 + 17718866 TTGAAAAGGAGAT--
s caeSp111.Scaffold626    112059 13 -  1189296 --gaaagaaaaggat
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3792702 13 +  4147112 TTGAAACGGaaag--
i caePb3.Scfld02_0      I 1544 C 0
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeRem4.Crem_Contig0   2268341 589 -  4500979 I

a score=-449.000000
s ce10.chrX              5518262 21 + 17718866 TTAAACTATTGCAACTAGATT
s caePb3.Scfld02_0       3792715 19 +  4147112 atgaaagagaaaaaccgGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeSp111.Scaffold626    112072 12 -  1189296 I
e caeRem4.Crem_Contig0   2268341 589 -  4500979 I

a score=9363.000000
s ce10.chrX              5518283 33 + 17718866 AAGCACTAAAGGAAATTGAAAACC-----------AGAGCGTTG
s caeRem4.Crem_Contig0   2268930 40 -  4500979 aaaCATTGAAGCAAATTGAAAGCGGATTTCC----AAATCATTG
i caeRem4.Crem_Contig0  I 589 C 0
s caeSp111.Scaffold626    112084 44 -  1189296 AAGCActagagaaaattgaaaaccgaTTTTAGAGAGGAGCTTTG
i caeSp111.Scaffold626  I 12 I 47
s caePb3.Scfld02_0       3792734 42 +  4147112 -AGCACTAAAGGAAATTGAAAGCCGATTTGA-AAAGGAGCCTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I

a score=-935.000000
s ce10.chrX              5518316 37 + 17718866 -CAATGTGAAGTGTCAGAAAAACTGCAT---AAGACCAAAC--
s caeRem4.Crem_Contig0   2268970 35 -  4500979 AAAAGAATAAGTG-----AAGCCCTGATTGTAAGTCC--ACC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3792776 40 +  4147112 -TGACAAGAAGTGTTTGAAAACCTTATTTGAAAGTCC--ACtg
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I
e caeSp111.Scaffold626    112128 47 -  1189296 I

a score=-167.000000
s ce10.chrX              5518353 5 + 17718866 AAAAC--
s caeRem4.Crem_Contig0   2269005 5 -  4500979 --AGCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    112175 5 -  1189296 GGAAC--
i caeSp111.Scaffold626  I 47 C 0
s caePb3.Scfld02_0       3792817 5 +  4147112 gaaac--
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18194   133839 0 -   823664 I
e cb4.chrX              10857655 1367 + 21540570 I

a score=26839.000000
s ce10.chrX              5518358 207 + 17718866 TAGAAAATGGAGTAC-ATCTGTCACTTGCATACTAATGAGAAATGTAGAAAACAAAAAAGTGGCGGATCAGCAGGTGCAAAGGGC----------AAC---------TGAATGAGGAAT----GCGCGTTC-GCTTT---------TATAGTGCCTCAGAGACCGAGCAGGGGGGGGGGGGGCACACACAACGTAGGTCATTT--TGG---CGGGCATCGTGTGGTCCCCCGCCTGTATCC----AAAGA
s cb4.chrX              10859022 208 + 21540570 TGGGAAATGGATA---ATCCATCAAATGCATACTAatgaaaaacga-----aagaaaGAGCAAAAGGACACGAGACGCC--AGACGCATCTAAAGAAC---------CGAATAACACAAAAGCGAACGGTG-GAGAAATGATG---TATAGTGCCTCAAAGACCGACCA--------GGGGTCACCCAAAACCGAGGTCAACA--CAAATCCGTCCGTCACGTGGTGTG-----TGTGTCT----AGAGA
i cb4.chrX              I 1367 I 11
s caeRem4.Crem_Contig0   2269010 188 -  4500979 TATAAAAGGGCTT---ATCTGTCATGTGAATGCAAATGAGAAAAG------ACGAGATAGCaagagga-aagag-------agaaactgAGAAAGAAC---------ACAACAACAGAG----GAACGGTT-GTGTAATGGTG---TACAGTGCCTCAAAGACCGAGCA--------GGGGTCACCC-AATCCGAGGTCAACA--TCGATTCAAACGTCATGTGGTG-------------T----AGAGG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    112180 217 -  1189296 CAGAAAACGGATTATAATACTCCAAATGAATACTAATGAGGaatggag--aaagagagt--gagagagtgagagattACAaggacgaaaagaaaaaac-----gcaGATGAGAACAACA----GAACGGCTGGTGTCCTAGTG---TACAGTGCCTCAAAGACCGAGCA--------AGGGTCACCC-CAGCCGAGGTCAACATTCACATCTGCCCGTCACATGGTCCG-----CGCTTCTCGTAGG---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3792822 210 +  4147112 tagaaaatggaTT---ATCCATCAAATGCATACTAATGAAG----------ACGAACGTTGGAGGGATTaagagacggaaaagaagagaacagagaactatttggagacaacaagaaga----gaacGGTT-GCGTACTACCGATCGACAGTGCCTCAAAGACCGAGCA--------AGGGTCATTC-AAACCGAGGCCAACA--CACATCTGTTCGTCACGTGGTCCG----TCGGGTCT----GG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839   0 -   823664 I

a score=-1263.000000
s ce10.chrX              5518565 15 + 17718866 TCAAATG-TTTTTTGA
s caeRem4.Crem_Contig0   2269199  7 -  4500979 -CCAACAC--------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    112397  6 -  1189296 -CCAACA---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3793032  6 +  4147112 -CCAACA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839  0 -   823664 I
e cb4.chrX              10859230 11 + 21540570 I

a score=15000.000000
s ce10.chrX              5518580 200 + 17718866 AAGTAATCCT----GTGGGAAACCGCAAGAGAGAGGGAAGAGGGGGATGAGAGAGGGAGAGAT-ACTTGTTGTTGTCTCTTCACCCAAATGGTGCACA--------------------------TCT-TTGTGGTGCGTTGAGGGGAATCTGATCATCTCTAAGACATCAAAGATTGAAT---AAAAAAAACATTCA-CTTTC---GAAAATTG--TT----GCTGAG--GAGAAGACAAGGAAA--GA------
s cb4.chrX              10859241 182 + 21540570 AAGTAGGTCT----GTGGGATA-----------------------------GAGGAGAGAGAA-GAATCATCTTGTTTTTCACGCCAAATGGTGTGCTCgtccttctctc--------------ttt-tttttctgc-------gaAATTCGATCATCTCTAAGACATCAGAGCTCGaatttagaagaagaagatgc-ctTTTCTGGAAAgctgtttt-----ttttg----aagggcggaaaaa--aag-----
i cb4.chrX              I 11 N 0
s caeRem4.Crem_Contig0   2269206 173 -  4500979 AAGTAGGCCT----GTGGGAAA-----------------------------GGAGA-AGAGAC-GCATCCTC----------CGCCAAATGGTGCAcgtctctctatctct--cttactatctattt-tcttattgc-------gAAATGCGATCATCTCTAAGAGACCAAAGCTC-------GCAAAAAACAATTC-CATTTCT-AAAAGTTG--TT-----GTGAG----AAAAGCGGAGAAA--TGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    112403 186 -  1189296 TAAGAGCCttaggagagagaga-----------------------------agagagatagatggcatcttcttttttctc-------------------ttcttgttttttatttgccacg--tct-ttctATTGC-------GAAATTTGATCATCTCTAAGAGATCAAAGCTC-------ACAAAAAACATTGC-CTTTTCT-AAAAGTTG--TTTATgggtgagaagaaaaggggagaaaatgaggaatgA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3793038 167 +  4147112 AGATGGCCAT----GGGAGAGG-----------------------------AAAGAGATAGAT-GCATCTTCgcgg---------------------------ttgttttt--tttgccacG--TCTCTTCCATTGC-------GAAATTTGATCATTTCTAAGCGATCAAAgctc-------agaaaaaacattccttttttct-aaaaattg--tttatgGTTGAG----GAAgggaatgaaa--agaaatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839   0 -   823664 I

a score=6973.000000
s ce10.chrX             5518780 15 + 17718866 ACACTGGAATGACGT
s caeRem4.Crem_Contig0  2269379 15 -  4500979 ACACTGAAATGATGT
i caeRem4.Crem_Contig0  C 0 I 576
s caeSp111.Scaffold626   112589 15 -  1189296 ACACTGAAATGATGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0      3793205 15 +  4147112 acacTTGAATGATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  133839  0 -   823664 I

a score=273.000000
s ce10.chrX             5518795 1 + 17718866 A
s caeSp111.Scaffold626   112604 1 -  1189296 A
i caeSp111.Scaffold626  C 0 I 1796
s caePb3.Scfld02_0      3793220 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 500
e caeJap4.Scaffold18194  133839 0 -   823664 I
e caeRem4.Crem_Contig0  2269394 576 -  4500979 I

a score=0.000000
s ce10.chrX             5518796 1165 + 17718866  
e caePb3.Scfld02_0      3793221  500 +  4147112 I
e caeJap4.Scaffold18194  133839    0 -   823664 I
e caeSp111.Scaffold626   112605 1796 -  1189296 I
e caeRem4.Crem_Contig0  2269394  576 -  4500979 I

a score=137.000000
s ce10.chrX             5519961 5 + 17718866 AAGTC
s caePb3.Scfld02_0      3793721 5 +  4147112 AAGCA
i caePb3.Scfld02_0      I 500 C 0
e caeJap4.Scaffold18194  133839 0 -   823664 I
e caeSp111.Scaffold626   112605 1796 -  1189296 I
e caeRem4.Crem_Contig0  2269394 576 -  4500979 I

a score=546.000000
s ce10.chrX              5519966 2 + 17718866 AA
s cb4.chrX              11355641 2 + 21540570 AA
i cb4.chrX              N 0 C 0
s caePb3.Scfld02_0       3793726 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839 0 -   823664 I
e caeSp111.Scaffold626    112605 1796 -  1189296 I
e caeRem4.Crem_Contig0   2269394 576 -  4500979 I

a score=-567.000000
s ce10.chrX              5519968 6 + 17718866 ---AACGAA
s cb4.chrX              11355643 6 + 21540570 AGAGAC---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    114401 6 -  1189296 AATAAC---
i caeSp111.Scaffold626  I 1796 C 0
s caePb3.Scfld02_0       3793728 3 +  4147112 ---AAC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839 0 -   823664 I
e caeRem4.Crem_Contig0   2269394 576 -  4500979 I

a score=33467.000000
s ce10.chrX              5519974 59 + 17718866 TGTAATGTACAAAAAATCATCAGAAAGTGCATGTTGTGT-----------ACTAACAC--TAAAACATACTT
s cb4.chrX              11355649 70 + 21540570 TGTAATGTACAATAATTCATCAGAAACTGCATATTGTGTAGATTTCTTTCACCGACAC--TTTCACACGTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2269970 70 -  4500979 TGTAATGTACAATAGTTCATCAGAAACTGCATGTTGTGTAGATAACTTTCACCGACAC--TAGTACAcgttt
i caeRem4.Crem_Contig0  I 576 C 0
s caeSp111.Scaffold626    114407 70 -  1189296 TGTAATGTACATTCATTCATCAGAAACTGCATTTAATGTCGCTTACATTCACCGACAC--AAGTACACGTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3793731 66 +  4147112 TGTAATGTACATTCATTCATCAGAAACTGCCTGTTGTGTTGC------TCACCGACACTAGAGTACACGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   133839  0 -   823664 I

a score=231694.000000
s ce10.chrX              5520033 413 + 17718866 AAGATGAA----------------------GAAAACAATAAAAT-TAATAACTTTAGCCAATAAA------AGGTACCGGTCAACAAA------------AAAGCAGTTGCTAGAACCCTGAAACCCAGCATCACAAATAACACACAAATTATGATTTATTCAGCCTTGATCGGCTTCTCGTGAGTGACCTC------AATCTCGA---CAGTAGTTGGCTGTGGCTTTTTGAGTGGCTTGAAGAACTTTGGCAAGGCAAAGATGACGGCAAATGCGACAATGTGTGGAATAAAATAGACTCTCTTCAAAACGTCGTAAGCTGGATACATGTGCATAGTGACAAAGGAGTAGGTGGCGTAGGCAAGAGCGATTTTACTGATGATGAACGAGAAAATATCGTAGGCAAACTTCTTATTGTGATCGTCCAGGAATCTCCAGCGCATTGAGCGACGGAACTGAAAA
s cb4.chrX              11355719 426 + 21540570 CAGATGGATGGCGGGGAACAAAAAGCGAAATAGTATAACAAAAC---ATAAATATAAAGTT----------GGATACCGGTCAACAAACgaaaaaggaataaaaaagCCGATTGAAACCA--------GCTTCgc----------aaaaatatgaattatTCCTGCTTGAGTGGTTTGTCAGATATGATCTCCGGCTTCTTTTCAG------AAACTGGTACTGGCTTTTTGAGTGGTTTGAAAAACTTTGGCAGGGCAAAAATGACGGCAAAAGCGACGATGTGTGGAATAAAGTAGACTCTCCACAGAACATCATAAGCTGGATACAAATGCATTGTTACGAAGGAGTAGGTAGCGTAGGCCAGAGCAATCTTGCTGATGATGAACGAGAAGATGTCGTAGGCGAACTTTTTGTTGGCATCGTCCAAGAATCGCCAGCGCATGCAGCGtcggaactgaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2270040 404 -  4500979 cagat------------aaaaataacaaaaaagaaagatgaaac--aataaatatcGTATA----------GGGTACCGGTCAACGaat-------------aaaagttgaaagaaaCCT--------GCATGacgaag-----aaaaattatgatttattCCTGCTTGATCTGCTTTTCGTCGATAATCTC------CTTTTCAA---TCTTGGCAGGTTGTGTCTTTTTGAGTGGTTTGAAGACTTTTGgtagaatgaaaatgacagCAAATGCAACGATGTGTGGAATGAAGTACACTCTCTTCAATACATCATAAGCTGGATACATATGCATTGTGACGAAGGAGTAGGTAGCATAAGCCAAAGCGATTTTGCTGATGATGAAGGAGAAGATGTCATAAGCAAACTTCTTATCCACGTTGTCCAAAAATCTCCAGCGCATCGAACGACGGAACTGTAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    114477 408 -  1189296 CAGATGTC------------------------AAACAATCAGAcacaataaataaaaaacagaaaaacttaAGGTACCGGtcaacggaa-----------aaaagagttgaaagAGACCT--------GTGTCACATTT------AGAATTATGAtttattcctttttgaatagtttttcatcGTTAATCTC------GATAGGAGCTTTTGGAGCTGGAGCTGGTTTCTTGAGTGGCTTGAAGATCTTcggaagaatgaaaatcacGGCAAATGCAACAATGTGAGGGATGTAGTAAACTCTGTTCAAAACTTCGTAGGCTGGATGCAAATGCATGGTGACAAAGGAGTAGGTAGCATATGCCAAAGCGATTTTACTGataatgaatgagaaaatgtcGTAAGCGAATTTCTTATCCGCGTTGTCCAAGAATCTCCAACGCATCGAACGAcggaactgaaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3793797 402 +  4147112 CAGATGGT-------------------------AACAATTAAAC-CAATAAatattagaaagaaaaaat--aggtaCCGGTCAACGG-------------AAGGGAGTTGAGAGAGACCT--------GAATCACATAG------AAAATTATGGCTTAATCCATTTTGAGAGGATTGTCGACGATAATATC------CTTTGCGACATTCGAATTGGATTGTGGCTTTTTGAGGGGCTTGTAGAACTTTGGCAGGACAAAAATGGTGGCAAAAGCAACGATGTGAGGGATGTAGTAAGTTCTGTTGAGAACTTCGTAAGCTGGATGCAAATGCATTGTGACGAAGGAGTAGGTAGCATAGGCCAAAGCGATCTTGCTGATGATGAAAGAGAAGATGTCATAGGCAAACTTCTTCGATGGATCGTCCAGGAATCTCCAACGCATTGAACGacggaactgaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   695034 390 +   823664 -------------aaggggaaagaaaaaaaaataataataacag-tAATAAATCAGAATCAGAATC-----AGATACCGGTGAAC---------------ATGAAAAATGTAAGAAATTA----------------------------TTTATG--TTACTCTTTCTTAATCGGTTTGTCGTTGACTATATC---------TGCGGCTGGGTTCGTCGGTTGCGGTTTTTTCAGTGGCTTGTAGTACTTTGGTAACACAAAGATGACAGCGACGGCGACAAAGTGTGGAAAGAAGTAGACTCGTTTGAGCACGTCAAAAGCGGGATACATGTGCATGGTGACAAACGAGTAGGTAGCGTAAGCCAGCGCAATTTTGCAGATCCAGAAGGAGAAGATGTCGTAGGCAAACTTGGCGTTGGCGTTGCCCAAGAATCTCCAGCGCATGCAGCGACGGAACTAAACA
i caeJap4.Scaffold18194 I 10592 C 0

a score=-278.000000
s ce10.chrX              5520446 3 + 17718866 -AAA
s caeJap4.Scaffold18194   695424 3 +   823664 CAa-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3794199 0 +  4147112 C
e cb4.chrX              11356145 0 + 21540570 C
e caeSp111.Scaffold626    114885 0 -  1189296 C
e caeRem4.Crem_Contig0   2270444 0 -  4500979 C

a score=-11954.000000
s ce10.chrX              5520449 106 + 17718866 TACAGTAAGACTTAAAAGATTTAGGTGGTTTAACAGATATTGCCAAATATCCTTTGGCTACTTGGCCCAAATCTGGCGCAAAACTATTTACTTGGACCAGAAGTTG-----
s cb4.chrX              11356145  30 + 21540570 ------aaaattcga-----------------------------------------------------------------taattatt-----gggaaaacgattt-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2270444  30 -  4500979 ------ACAAATTTT-----------------------------------------------------------------TAGTTAAG-----AAGTTACCAGCTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3794199  52 +  4147112 -ataacataatTCGAATGG---AGGTGG----------------------------------------------------GAACTAAG---TTGAGTCAAAAGCTGAGCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   695427   0 +   823664 C
e caeSp111.Scaffold626    114885   0 -  1189296 C

a score=382.000000
s ce10.chrX              5520555 4 + 17718866 GCAA
s caeJap4.Scaffold18194   695427 4 +   823664 gcaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3794251 0 +  4147112 C
e cb4.chrX              11356175 0 + 21540570 C
e caeSp111.Scaffold626    114885 0 -  1189296 C
e caeRem4.Crem_Contig0   2270474 0 -  4500979 C

a score=-8290.000000
s ce10.chrX              5520559 29 + 17718866 TATTGGATCCAACTGGAGCCAAAACAAGT
s cb4.chrX              11356175  6 + 21540570 -----------------------ttggat
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2270474  6 -  4500979 -----------------------GTGAGT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    114885 28 -  1189296 tatt-gattccACTTgagcaaaaataaat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3794251 16 +  4147112 -------------CGTAGCCAAAGTACAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   695431 21 +   823664 taaaaaattcaacc----cCAGAAT----
i caeJap4.Scaffold18194 C 0 C 0

a score=-19737.000000
s ce10.chrX              5520588 109 + 17718866 CTTGCCCAAGTTTTGCCCAACTCTTACCAAACTGTTGCCATCTTTCAGTCCAGGCTAATAACTTTTCACCAAATTTGGGCAAGTGGCTAGTGCCAGCAGTAAAAATGCT
s cb4.chrX              11356182  20 + 21540570 --------------------------ctaaatTAT---------------------------------------------------------------ATCAAAGGGTG
i cb4.chrX              I 1 I 1
s caeRem4.Crem_Contig0   2270481  37 -  4500979 --------------------------CTAGACTGTTTCCGT---------------------------CCACATTCATGc----------------caattaaaa---t
i caeRem4.Crem_Contig0  I 1 I 1
s caePb3.Scfld02_0       3794267  23 +  4147112 ------------------------CTTCATATTCT---------------------------------CTGTATTTTTGC-----------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   695452  11 +   823664 --------------------------CCAAAGTTTTA------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    114913   0 -  1189296 C

a score=765286.000000
s ce10.chrX              5520697 959 + 17718866  
s cb4.chrX              11356203 992 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2270519 912 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    114913 952 -  1189296  
i caeSp111.Scaffold626  C 0 I 35
s caePb3.Scfld02_0       3794290 967 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   695463 959 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-1936.000000
s ce10.chrX              5521656 1 + 17718866 -A
s cb4.chrX              11357195 1 + 21540570 -A
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   2271431 1 -  4500979 -T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3795257 1 +  4147112 -a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   696422 1 +   823664 t-
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    115865 35 -  1189296 I

a score=657.000000
s ce10.chrX              5521657 3 + 17718866 TTA
s caeRem4.Crem_Contig0   2271432 3 -  4500979 GTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3795258 3 +  4147112 tta
i caePb3.Scfld02_0      C 0 I 22
s caeJap4.Scaffold18194   696423 3 +   823664 ttg
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I

a score=273.000000
s ce10.chrX              5521660 1 + 17718866 T
s caeRem4.Crem_Contig0   2271435 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 7
s caeJap4.Scaffold18194   696426 1 +   823664 t
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3795261 22 +  4147112 I
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I

a score=-116.000000
s ce10.chrX              5521661 12 + 17718866 GGTG-TAAACGAA
s caeJap4.Scaffold18194   696427 13 +   823664 gaaattaGAGGAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3795261 22 +  4147112 I
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I
e caeRem4.Crem_Contig0   2271436  7 -  4500979 I

a score=0.000000
s ce10.chrX              5521673 647 + 17718866  
e caePb3.Scfld02_0       3795261  22 +  4147112 I
e caeJap4.Scaffold18194   696440   0 +   823664 C
e cb4.chrX              11357196  35 + 21540570 I
e caeSp111.Scaffold626    115865  35 -  1189296 I
e caeRem4.Crem_Contig0   2271436   7 -  4500979 I

a score=2.000000
s ce10.chrX              5522320 7 + 17718866 TGTATAC
s caeJap4.Scaffold18194   696440 7 +   823664 TGAAAAG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3795261 22 +  4147112 I
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I
e caeRem4.Crem_Contig0   2271436 7 -  4500979 I

a score=880.000000
s ce10.chrX              5522327 6 + 17718866 AGTATC
s caeRem4.Crem_Contig0   2271443 6 -  4500979 AGTATT
i caeRem4.Crem_Contig0  I 7 C 0
s caeJap4.Scaffold18194   696447 6 +   823664 AGCata
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3795261 22 +  4147112 I
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I

a score=-741.000000
s ce10.chrX              5522333 11 + 17718866 TTTGCAAAGGT
s caeRem4.Crem_Contig0   2271449 10 -  4500979 -TTTGTGGATT
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3795283 11 +  4147112 TTTGGTAAGAT
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold18194   696453  8 +   823664 tttaaaaa---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11357196 35 + 21540570 I
e caeSp111.Scaffold626    115865 35 -  1189296 I

a score=1910.000000
s ce10.chrX              5522344 2 + 17718866 CT
s caeRem4.Crem_Contig0   2271468 2 -  4500979 CT
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold626    115900 2 -  1189296 CT
i caeSp111.Scaffold626  I 35 C 0
s caePb3.Scfld02_0       3795294 2 +  4147112 CT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   696461 2 +   823664 ct
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11357196 35 + 21540570 I

a score=92781.000000
s ce10.chrX              5522346 87 + 17718866 TACTTGTGAACTTGGGTTGGTGGGGCAAAATACATGATCGCATAACTTCCCAGTGCATTTGCAAGTAGATGTTTGATAGCCCTGAAA
s cb4.chrX              11357231 87 + 21540570 TACTTATGAACTTGAGTAGGTGGCGCGAAATACATGATGGCGTAACTTCCAAGAGCGTTTGCAAGTAGATGTTTGATGGCTctgaaa
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2271470 87 -  4500979 TACTTGTGAACTTGAGTTGGTGGGGCGAAATACATAATAGCATAACTTCCGAGGGCATTGGCAAGAAGATGTTTGATagctctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    115902 87 -  1189296 TACTTGTGAACTTGAGTTGGTGGGGCGAAATACATGATTGCATAGCTTCCAAGTGCATTGGCAAGAAGATGTTTGATTGCTCTGgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3795296 87 +  4147112 TACTTGTGAACCTGGGTTGGTGGGGCAAAGTACATGATGGCATAACTTCCGAGAGCATTCGCAAGGAGATGTTTGATTGCTCTGAAA
i caePb3.Scfld02_0      C 0 I 344
s caeJap4.Scaffold18194   696463 86 +   823664 cacttgtgCACCTGAGTTGGTGGCGCAGAATACATAAGGGCGTAACTTCCGAGGGCATTTGCAAGAAGATGTTTGATGGCTCTAAA-
i caeJap4.Scaffold18194 C 0 C 0

a score=-11751.000000
s ce10.chrX              5522433 38 + 17718866 AATAATGCATTTTTAGTCAATTTCATAATAAGTGCTTG
s cb4.chrX              11357318 16 + 21540570 --ttgttgatttttagcA--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2271557 16 -  4500979 --tt-ttgaacatcaGTAT-------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    115989 32 -  1189296 ----atataatttcagtGTA--AAATGTCAAGTATCTA
i caeSp111.Scaffold626  C 0 I 28
s caeJap4.Scaffold18194   696549 28 +   823664 ------TTCTTGTTGGTTCAATTATTTCTATGTA----
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3795383 344 +  4147112 I

a score=117718.000000
s ce10.chrX              5522471 178 + 17718866 CTCATA--ATTATTTGCTATG----------ACTAACCTTCCAAAACAGAAAAACACAATTCCAATTCCAACAACTGCAGGAACTACTGTCCTCACTTGTCGATTCACCTGCTTTAGGGAACATGTTTTTCGATAAACATATGATATTCCAAAACATGCAAACAAACTCAACACAAAGTTGACCTGAAAT
s cb4.chrX              11357334 177 + 21540570 -TCTCT--TTGGTTTTTGGGA----------TCTTACCTtccaaaacagaaaaacaacaaTGTGATTCCAACCACTGCAGGTATTACTGTCCTCACTTGTCGATTCACTTGTTTCAGAGAGCATGTCTTTTTGTAGATGtacgaaattccaaaactggCAAACAAGCTGAGCACGAAGTTGACctaaaaa
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   2271573 181 -  4500979 -TCAAT--ATTATTACTGGAG------ACCTTCCTACCTTCCAAAACAGAAGAACACCAACGACAACCCGACCACTGCTGGAATGACTGTCCTAACTTGCCGATTTACTTGCTTCAGTGAACATGTTTTTTGGTAGATGTAGGAGATTCCAAAACTGGCGAACAGACTCAGCACGAAATTTACCTGAAAT
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold626    116049 179 -  1189296 aacattgaaaaattactgaTA-----------CTTACCTTCCAAAACAGAAGAATACCAGTGATATTCCTACAACCGCAGGAACCAGTGTTCTCACTTGTCGATTCACTTGATTAAGTGAACATGTCTTTTGATAGATGAAGGATATACCGAAACTTGCGAACAAGCTCAGCACAAAGTTTACCTGAAAC
i caeSp111.Scaffold626  I 28 I 33
s caePb3.Scfld02_0       3795727 177 +  4147112 CCCATT--AATCTTGACTAGA-----------CTCACCTTCCGAAACAGAAGAACACTAGTGAAAGTCCCACAACTGCAGGAACCAGTGTCCTCACTTGTCGATTCACTTGTTTCAATGAGCATGTTTTCTGGTAGATGAAGGAGATTCCGAAACTGGCGAACAAACTGAGCACGAAGTTTACCTAGAAT
i caePb3.Scfld02_0      I 344 I 35
s caeJap4.Scaffold18194   696577 168 +   823664 -------------TCCTGAACCGACTGATTAACATACCTtccaaaacagaaaaacacaAGAGCAATTCCAATAACTGCGGGAACAACGATTCGAACTTGCCGGTTCACTTGACTTAGTGAGCACGTTTTCCGATAGACGTACGAAATTCCAAAAGCTGCGAATAGACAAAGCACAAAGTTA---------
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5522649 39 + 17718866 ACAAAAACTTTTATAAACAGAACCCCTCTGATTATAATA
e caePb3.Scfld02_0       3795904 35 +  4147112 I
e caeJap4.Scaffold18194   696745  0 +   823664 C
e cb4.chrX              11357511 34 + 21540570 I
e caeSp111.Scaffold626    116228 33 -  1189296 I
e caeRem4.Crem_Contig0   2271754 36 -  4500979 I

a score=82715.000000
s ce10.chrX              5522688 89 + 17718866 AACTCACTCTGTCTGCCTCAATGCCAATTGTTTCAGCCAGCGGTTCCAGTATCTTGGAACCATCGTAAAATGTGTGAATTCCCGGCATT
s cb4.chrX              11357545 89 + 21540570 aactcACTCGATCCACTTCCAAACCAATTGATTCAGCAAGaggttccaaaattttagatcCATCGTAAAATGTGTGTATTCCCGGCAtt
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   2271790 89 -  4500979 AACTCACTCTATCCACTTCGATTCCAACTGTTTCAGCCAGCGGTTCCAATATTTTTGATCCATCATAAAATGTGTGTATTCCCGGCATT
i caeRem4.Crem_Contig0  I 36 C 0
s caeSp111.Scaffold626    116261 89 -  1189296 aactcactctatCCACTTCGATTCCGACTTTATCAGCCAACGGCTCCAGGATTTTGGAGCCATCGTAGAACGTATGAATTCCCGGCATC
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       3795939 89 +  4147112 AACTCACTCTATCCACTTCGAGTCCGACCTTGTCGGCCAGAGGTTCCAGTAGTTTGGAGCCATCGTAGAAAGTATGGATTCCCGGCATT
i caePb3.Scfld02_0      I 35 C 0
s caeJap4.Scaffold18194   696745 84 +   823664 -----ACTCTGTCCACTTCGATTCCAATTTTATCCGCTAACGGTTCCAACACCCTGGAACCATCGTAAAACGTGTGAATTCCCGGCATT
i caeJap4.Scaffold18194 C 0 I 14972

a score=-9834.000000
s ce10.chrX              5522777 49 + 17718866 GGGTAACCTAAAA--CGAG-TGGCCATGAGA-TAACTATTTCGTCGAATACAC---------
s cb4.chrX              11357634 53 + 21540570 --------tgaaagctgaa-aaaaccaacaaataaTTATGATTAGCAAAAAGTAGACGACTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2271879 51 -  4500979 --------TGGGA--TGTC-GGAACCTGAAattactgaatttcaaaaataagttgcTAAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    116350 25 -  1189296 --------TGAGA--CGAG-AAAACCTGA--------AAGTTCG------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3796028 51 +  4147112 --------TGAGA--CGGGAAAAACCTGGAA-TGATCAAGTTGGTTATCACGTAGTTTATAT
i caePb3.Scfld02_0      C 0 I 19
e caeJap4.Scaffold18194   696829 14972 +   823664 I

a score=-4704.000000
s ce10.chrX              5522826 34 + 17718866 TCTAGTCAAAGGTGTAAGCTAC-AATACAAAGTTC-
s cb4.chrX              11357687 31 + 21540570 -----TCTAGCGGAAAAAAGACTAGATAATAAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2271930 30 -  4500979 -----TGAAACGTGAAGATTAC-GTATCATAAATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    116375 22 -  1189296 -------AAATGTTTAA------CCTTTATAAAGT-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3796079 19 +  4147112 I
e caeJap4.Scaffold18194   696829 14972 +   823664 I

a score=-11302.000000
s ce10.chrX              5522860 32 + 17718866 --------------AAGGATAGAAT---------------CTCGAGAAAATAAACAATATA---------
s cb4.chrX              11357718 30 + 21540570 AAACATATTgctta--gaaaaaaat-------------------------------acataaa-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2271960 62 -  4500979 AGAGATGAtgattagtgaaaaaaatgaaaacgaaaacagACTAGA-AAACTACACAACATAAA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    116397 22 -  1189296 ----------------AGAAAGAAT--------------------------------tataaaaaacata
i caeSp111.Scaffold626  C 0 I 32
s caePb3.Scfld02_0       3796098 30 +  4147112 --------------AAGGGTAGGAT-------------AGCTAG------------ACATAGAAGACAT-
i caePb3.Scfld02_0      I 19 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I

a score=-7036.000000
s ce10.chrX              5522892 41 + 17718866 ---TCTG------ATCAAACTTTTTTGAGAAGAGGGGAGAAAGAAGAAAT
s cb4.chrX              11357748 18 + 21540570 --tttCA----ATGTCCTTTCCC---------A-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2272022 31 -  4500979 --TTCTAGCGCGTGTCATATTATTCGGACAAGA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3796128 33 +  4147112 AAATTTGGAAGTTGTCAATTGAATTGAGAGAGA-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e caeSp111.Scaffold626    116419 32 -  1189296 I

a score=83912.000000
s ce10.chrX              5522933 244 + 17718866 TGATTGATGCTGATAGT---AGAATAATTTATCGGAAATCAGTGTGAAATTCG-TGCA---AGAAAGAGCTACTTACGATAAG---------------AGAACCA--CGGAAAGTGCCCCGAGAAAGAGTG-GAGAAAAAGAAAGAAAAGACAATTGCCTGG----CCAGGGGTATCACGCCACCAAACGC---GTATGTGTCGTGCCTTTCAA---AAAG----------TGCCGGTCAAGGTCTAATTTGAAATCATCA-------TCCCGGACGACGCACA-TGCGCTCTATTT
s cb4.chrX              11357766 275 + 21540570 TGATTGATGGTGataatgaaaaagaaatttatcGCAAATCAGGATAAAAAACGTTTCGTCAAAGATGAGCTACTTCTGATAAGAAACAG---------ATAGGGA--TGGTGAAT--GTCGAGAAAgagtg-gaaaagaaa--aaaaaagacaattggTTGGCCTGCGAGGAGTATCACGCCACC-AGCGGCGCGTTTGTGTCGTgcctttggaaaaaaa-----acgcacTGCCGGTCAAGGTCTAATTTGAAGTCACCGACTCCTCTTCCGGAGACGACACATTTCACTCTAGTT
i cb4.chrX              C 0 I 675
s caeRem4.Crem_Contig0   2272053 257 -  4500979 TGATTGATGCTGATAGT---ACAACAACTTATCGGAAATC---ATGGAAATCGTTGCG---AAAAAGAGCTACTTTTGATaagaaagtg---------agagagactcgtcgaac--tttgagaaagagtgagaaaagaaa-gaaaagagacaattgGTTGG-ATGC---GAGTATCACGCCACC-AGTGG---GTTTGTGTCGTGCCGTTGGGTAAAAAACTACACGCACTGCCGGTCAAGGTCTAATTTGAAGTCATCA-------TCCCGGA---TGTACA-TCCGCTCTAGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    116451 246 -  1189296 TGATTGATGCTGATAAT-----GAGAACTTATCGGAAATC---GTGGAAATTGTTGCG---AAAAGGAGc-----ttgataagaagaaaaaagaaagaagagagacatg-cgaattagtcgagaaagagtg-ggaaa---------aaagacaatTGGTTCG---ACGGGGAGTATCACGCCACC-AGTGC---GTTTGTGTCGTGCCTTTGGA---AAAACTACAC----TGCCGGTCAAGGTCTAATTTGAAGTCATC------GTTCCCGGA---CGCACG-TGCGATTTAGTT
i caeSp111.Scaffold626  I 32 C 0
s caePb3.Scfld02_0       3796161 240 +  4147112 TGATTGATGCTGATAGT----AAAAAACTTATCGGAATTC---ATGGAAACTATTGCG---AAAA-GAGCTA---TTGATAAG---------------AGAGACAGCCG-TGAATTAGTAGAGAAAGagta-gaaaaagaa-gcggAAAGACAATTGGTTGG---CCGAGGAGTATCACGCCACC-ACTGC---GTTTGTGTCGTGCCTATGGG---AAAACTACACGCAGTGCCGGTCAAGGTCTAATTTGAAGTCATCT-----TTTCCTGGA---C-------GTGATCTCTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I

a score=546.000000
s ce10.chrX              5523177 1 + 17718866 T
s caeRem4.Crem_Contig0   2272310 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    116697 1 -  1189296 T
i caeSp111.Scaffold626  C 0 I 15
s caePb3.Scfld02_0       3796401 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I

a score=-1644.000000
s ce10.chrX              5523178 34 + 17718866 CGAGTGTGCTTGTGCGTGCCTAACAGTTGCCAAC---
s caeRem4.Crem_Contig0   2272311 18 -  4500979 -------------------CTAAGAATGGTTTGACTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3796404 14 +  4147112 --------------------TAAAAATTGTTCAG---
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeSp111.Scaffold626    116698 15 -  1189296 I

a score=13136.000000
s ce10.chrX              5523212 194 + 17718866 TGCCGGAAATCCAAAGAGTTTATTGTTGTTGGTTTTTTTCGTTCATGGAAAAAAAATAAGATCAA-------------GACACTGAACAGTTAAAGTGGATAAATAAATAATTGAGAAGAATAGACTAGTCAAACGAACAA-AACTTTGGGGCTGGTGTGTTTACTCACTTTCT------GTGTCACGTGGAAAAAACTTTATTTCAAAACTGT
s caeRem4.Crem_Contig0   2272329 163 -  4500979 ---CGAAAATCGCAGA----------TTAGGTTCActtaca------agaaaaaaatcgt------------------aTTACTAAACTGTACGAGTCaatgg---aaagaaagagagggagaaaagAGTCATACGGCAA--AACTC---AGCAGTTTTGtttact---ttcaaaatgaaacgtCACGTGATAAC---TCTCTCGCAAAACTGT
i caeRem4.Crem_Contig0  C 0 I 252
s caeSp111.Scaffold626    116713 173 -  1189296 TAACGGAAATCCG-------------TTGGGGTGTGTTTCg------agtaaaaaacaaaaacaacggAG--------GCGGTTAAACAGTTAGAGTGTATGG--------ATCagagggaaaagagagtCATACGACAAAGAACTT---GGCTGTTGTGTTTACT---TTTCTAGAGAAGCGTCACGcgataaacttttttttactaaaCCGT
i caeSp111.Scaffold626  I 15 I 59
s caePb3.Scfld02_0       3796418 186 +  4147112 CTACGGAAATCTAGTT------TTATTGGAGgcgtttttcg---gaaaaaagaaaataacaacaacGGAAAAAATGGTGTAAGTGAACTGTTAGAGACTATTG--------ATGAAGGGGGAA--AGAGTCATACGACAAA-AACTC---CGCAGTTTTGTTTACT---TTCCAAGTCTAACGTTACGCGATAACC--CATTTTGCAAAACTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I

a score=419.000000
s ce10.chrX              5523406 19 + 17718866 GTCACCGGGACTGATGACT
s caePb3.Scfld02_0       3796604 18 +  4147112 -TCGCTTAAACTTAGGATT
i caePb3.Scfld02_0      C 0 I 43
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeSp111.Scaffold626    116886 59 -  1189296 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=0.000000
s ce10.chrX              5523425 745 + 17718866  
e caePb3.Scfld02_0       3796622  43 +  4147112 I
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeSp111.Scaffold626    116886  59 -  1189296 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=263.000000
s ce10.chrX              5524170 10 + 17718866 CACAAAAACA
s caeSp111.Scaffold626    116945 10 -  1189296 CGCGAAACGA
i caeSp111.Scaffold626  I 59 C 0
e caePb3.Scfld02_0       3796622 43 +  4147112 I
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=-534.000000
s ce10.chrX              5524180 199 + 17718866 AACATAAAAA-CAGAAAACAAGAGGG-CCAGAAATCAAT---GACACAACAAAAGACAACGTCATTGCTCAATAAAACGCC-TGTGCATACCGTCAG---------------TGACCCCTGATATTAGAGCGAATTTGCA-TCCCACATTGTCTTCGGGGAAAGCAGTTTGCAATCTTTTTCAGCCTGATCACGTTCTCGCACACTCA-AAAACGCGCCAAA----------------
s caeSp111.Scaffold626    116955 187 -  1189296 AACAAAAGAT---GGTCGATAGACGGACCAACGATCAATATTGTAACAACAAGAA-TGACGTGTCGTATGAGCACTGTTGCGTGTAGAGACTGTCCCTCCTATCCCATT---CGGTCCATTCAattagagcgcatttgcattcTTCCCATATTTCTTAGGAATACAGTTTTC------------------------TTGACACAA----AAGACATaccgaa----------------
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3796665 197 +  4147112 AACATAGGAGAGAGGTCAAAGGAGGG---GACGATCAAT------ACAACAACAG-TGATGTAAT-TATGAATAGTGCAAC-TGTGTGCACtgtctccctctttttttttgacggcCCTTCTCCtcagagcgcatttgca-tattACTGT-TTTCCCGAGAAAACGGTTTGC---------------------------AAACAGCCTCAATACATTCCTAACACCCGATTCAAAAAC
i caePb3.Scfld02_0      I 43 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=0.000000
s ce10.chrX              5524379 13 + 17718866 ACTACTTTTTTTA
e caePb3.Scfld02_0       3796862  0 +  4147112 C
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeSp111.Scaffold626    117142 12 -  1189296 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=91.000000
s ce10.chrX              5524392 1 + 17718866 A
s caeSp111.Scaffold626    117154 1 -  1189296 a
i caeSp111.Scaffold626  I 12 C 0
e caePb3.Scfld02_0       3796862 0 +  4147112 C
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeRem4.Crem_Contig0   2272492 252 -  4500979 I

a score=26041.000000
s ce10.chrX              5524393 414 + 17718866 TCGGAAGGCCGTTCATCTATCATTTTTGCGTGAATATTTGTTAAATGCGTGG--CTGATAAGGAGTGAAGGCCGATCAAGGGTCGAGCGGGCGGTAATGAGGGGAAAGTACATTCTC--GTAATGAT----TCTTATCAAATGGA-------------ATACTTGGGTTTTCCTTTCATTAACTGCAGAAAATTGAAACTAGAAAATGGTTAGAAAGCAAAAAAAAACGTTGCATATTTCCATGACATATATTTTGTATG-ATGATCAAGCTCATTCTGTGATGGGAAAGTAAAAGCTTATACAGTGTCGGCGATTTTTTTAAAAACTGCGGCTTTTGAGTAATTTCGTAAATTAttaaagatggagtagcgtggttagaaatttcgttttaaaatgatgaaattgacttaaaTTCAGAAAAACCACAAAAGAAA-A
s caeRem4.Crem_Contig0   2272744 312 -  4500979 TCGGTAGGCCTCTCATCTATCATTTTTGCGTGAATATTTGGTGAATGTGTGA--CTGATAAGAACTGAAGGCCGATCAAGGGTCGGGAAGAATTTAATAAGGGGAAAGTACATACTCCTATAATGAACATTCATTATCAGTTCAATTTACACgcttttttccc--gtttttcctTTCATTAACCAACACGGTTGAGAGTTGGAAAAC------------------------GCA--------------ACGATTTgcaagaa---------------------aagtgaaaataggCTGG----------------------------------GTGAGGTCATGACGCAAA--AAAGAATATGTGG----------AAAATTTATGCTAAGCgggcagaaaa---------------aaaaacgaagaaagaaga-
i caeRem4.Crem_Contig0  I 252 I 30
s caeSp111.Scaffold626    117155 261 -  1189296 tcgGGAGACCGTTCATCTATCATCTTCGCGTTAATATTTGGTGAATGTGTGTTGCTGATAACAACTGGAAGCCGATCAGGGGTTGATTGAGA-GTAATGAGGGGAAAGTACACAC----ATTATGAA----CTTTATCAGTGAAA-------------TTCcc--ggttttctttt--tttaat----------------agaaaacg-----------------------GCA--------------ACATTTCTGCAG-A---------------------AAATGAGTAGGAGCTGA---------------------------------TGTGAGGTCATGACGCAAA--ATTGAATATGC------------AAAA---GTGTATGGCGA-----------------------GCGTGcgggagaaaaaa--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3796862 278 +  4147112 -CGGTATACCGTTCATCTATCATCTTGGCG-------TTGGGAAATGTGTGT--CTGATAAGGAATGAAGGCCGATCAAGGGTTGAAAGGGA-GTAATGAGGGGAAAGTACactc----aaatgaaa----aattatcagtACTG-------------TTGGC--AAATTTCCTTTCATTTACTGGAAGGA--GAAAGTGGGAAAATG-----------------------GCA--------------ACATTTTGCAAG-A---------------------AAGAAAGCTGGTGGTGA-----------------------------------GGAGGTCATGACGCAGA--ATTGAATatgcaa----------aaaa---gtgttttgcgaaaaaaaaa------------aagaaaaacgggaaaagaag--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I

a score=-3806.000000
s ce10.chrX              5524807 164 + 17718866 CAGTCAATTAAAAAAACGATTTTTCAATTGTTTGAATTCCCTCTAAAATAAAATCCTCAATATTAAAGTGACAAAATTAA--AAATTTCACCTAAATTAAGCTCTTTTCCTTGAACTTTAAAACCGGGATTACACTTTTTAGTTCTTTTTGAGAAGTCTCCTTATA
s caeSp111.Scaffold626    117416  72 -  1189296 -----aatggaaaagaaa--------------------------gaaaaaaagcgctCAAAAGTCTAACCACGTGTTGTG--AAgt--------------gctttttt-------------------------------------tgtttgacaAG----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3797140  74 +  4147112 -----gat-gagaagagg--------------------------aaaaagcagcgctcaaaagTTCAAGCACATGCTCtgacaaat--------------gttttttt------------------------------------ctgtgtgaCGGA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I
e caeRem4.Crem_Contig0   2273056  30 -  4500979 I

a score=-9035.000000
s ce10.chrX              5524971 62 + 17718866 AAATGCATTTACTGGGGAATTTTGAGTATATT----AGCCAAAAACTGTACTCCTCTTTTGACTTG
s caeRem4.Crem_Contig0   2273086 41 -  4500979 --AGGCAC-----------------ATATGCT----Ggtaagaaatgtt--tttttttctgctatG
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold626    117488 15 -  1189296 ---------------------------ATATT----GATCTGAGGT--------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3797214 19 +  4147112 ---------------------------AGATTCGGAGTTtataaat--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   696829 14972 +   823664 I
e cb4.chrX              11358041 675 + 21540570 I

a score=-7324.000000
s ce10.chrX              5525033 49 + 17718866 TATTATTTTTCACATGATTTTTTCCAGTATGAAGaatttttaa------atattc--
s caeRem4.Crem_Contig0   2273127 40 -  4500979 GATCTTGTGTAAAGCGAGAT------GCATGAAT-ATATTTAT------ATAT----
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    117503 26 -  1189296 ----------------------------ATGAAT-ATATTTATTCCGTGATATTA--
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3797233 26 +  4147112 ----------------------------ataaat-atatttatttcatgatatca--
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   711801 51 +   823664 TAGtttttttCGTATTCCTCTtgaaaatctgcaaaaaatttac------aaatcttc
i caeJap4.Scaffold18194 I 14972 C 0
e cb4.chrX              11358041 675 + 21540570 I

a score=984330.000000
s ce10.chrX              5525082 1475 + 17718866  
s cb4.chrX              11358716 1356 + 21540570  
i cb4.chrX              I 675 C 0
s caeRem4.Crem_Contig0   2273168 1345 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 1
s caeSp111.Scaffold626    117534 1306 -  1189296  
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3797264 1339 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   711852 1321 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-2664.000000
s ce10.chrX              5526557 27 + 17718866 CTGGAAATTATTGATACCAAAAATTAT
s caeRem4.Crem_Contig0   2274514 11 -  4500979 TTAAAAATTAT----------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    118840  7 -  1189296 ctggaaa--------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3798603 17 +  4147112 ctaaaaatgaaaaatat----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   713173 17 +   823664 CTGAAACAAACAATTAC----------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11360072  0 + 21540570 C

a score=-5206.000000
s ce10.chrX              5526584 107 + 17718866 TTATATTCATAACTAACATTGTATTTTTCAGCGATAAAGTGTTTGGAATCACTTTTTTGaaattttttattttaaatttaaaGCTTCTTCAAGATCGAACATGTATA
s caeSp111.Scaffold626    118847  15 -  1189296 -------------------------------------------------------------------------------atgacTTCtactatg-------------
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3798620  27 +  4147112 tt-------------------------------------------------------------------cttaaAATTTATAACCTCTGCAGGA-------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   713190   0 +   823664 C
e cb4.chrX              11360072   0 + 21540570 C
e caeRem4.Crem_Contig0   2274525   0 -  4500979 C

a score=-11.000000
s ce10.chrX              5526691 13 + 17718866 ACTGTGAAAAAGT
s caeJap4.Scaffold18194   713190 10 +   823664 ACTGCAAACA---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3798647  1 +  4147112 I
e cb4.chrX              11360072  0 + 21540570 C
e caeSp111.Scaffold626    118862  1 -  1189296 I
e caeRem4.Crem_Contig0   2274525  0 -  4500979 C

a score=-16612.000000
s ce10.chrX              5526704 132 + 17718866 ATCCAAAGGTTAAAATTTCGAGAAATATTGGTAGTTTACCAAAGCTTTCACCTGAAACTTATAAACATCTTAGATATGTTTCACTGTTTTGTTGTGATATTTGGTTTTGATATATGTTTAATTAAAACTTAC
s caeRem4.Crem_Contig0   2274525  33 -  4500979 GTCCAAatatt---------------gttattattttattaaa---cTCAC---------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    118863  19 -  1189296 aaaaaaacctt--------------------------------tttcttaC---------------------------------------------------------------------------------
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3798648  35 +  4147112 ATGCATAGCTT----------------TGATAAGTTTGTTAAATTTCTCAC---------------------------------------------------------------------------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   713200  20 +   823664 --TCAAAAAAC--------------------------ACTAAA---ATTAC---------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11360072   0 + 21540570 C

a score=714091.000000
s ce10.chrX              5526836 930 + 17718866  
s cb4.chrX              11360072 934 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2274558 924 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    118882 926 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3798683 922 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   713220 995 +   823664  
i caeJap4.Scaffold18194 C 0 I 24

a score=13359.000000
s ce10.chrX              5527766 30 + 17718866 ATCCTTTGGAACAATTCTGGGTTTTTGAGT
s cb4.chrX              11361006 27 + 21540570 ATTGTCTGTGATAATTT---GTTGTTGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2275482 27 -  4500979 GTCTTCTGGAACCACTT---TTTGTTGGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    119808 27 -  1189296 GTCTTCTGGAACAACTT---GTTGTTGAAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3799605 27 +  4147112 ATCTTCTGGAACAACTT---GTTGTTGAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   714215 24 +   823664 I

a score=1026137.000000
s ce10.chrX              5527796 1925 + 17718866  
s cb4.chrX              11361033 1840 + 21540570  
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   2275509 1892 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    119835 1829 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3799632 1846 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   714239 1849 +   823664  
i caeJap4.Scaffold18194 I 24 C 0

a score=-2452.000000
s ce10.chrX              5529721 32 + 17718866 -----------TATAATTGATATACATAAAG----CTTAAACTAGTT
s caeRem4.Crem_Contig0   2277401 26 -  4500979 -----------TATAGTGAgt------ggaa----taaaaaatagta
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3801484 22 +  4147112 -----------tacaactgtt--------------tcgaaaacagtC
i caePb3.Scfld02_0      I 6 I 5
s caeJap4.Scaffold18194   716088 42 +   823664 aattattaaaataaagTCGTT-----TGAAATTTCTTAATATTATTT
i caeJap4.Scaffold18194 C 0 I 1
e cb4.chrX              11362873 38 + 21540570 I
e caeSp111.Scaffold626    121664  0 -  1189296 C

a score=182167.000000
s ce10.chrX              5529753 274 + 17718866 CTTACGTGCTTCCCTTGGTGCAAACCGTGTTGGCGTTGCAGGATGCACCTGGAACAACTTCCAACTTTCTTGGAGTCACACATTGTCCTTGTGAGATTTCTGACTTGTCTTGTGGGCACTCGCAAAGCT---------GAAATGATT-CACTTAACAT----CTATATTGCCCTTTTTTTGATT-------ACCTTTCTGAATGAGCAAGCACTTCCTCCGACGCAAGTCTGTCCTTGTGTGCAGCTCTCTCCTGGTTTTGAGTACAATCTTGCGGTGGTAGCTAAAAATGGAAT
s cb4.chrX              11362911 274 + 21540570 CTTACGTGCTTCCTTTAGTACATTGAGTGTTGGCATTACAGGATGCTCCTGGTACagcttccatttttttcgggGTCACACATTGTCCttgagaaatttcagacttgTCTTGTGGGCATTCACAGAGCTAGAATAACAAAAACGATT--AATTAGCAA----tttaaaaacattg-------------aaaacctTTCTGAACGAGCAATTACTTCCACCAACACACGTTTGTCCTTGTGTACAAGCCTCACCTGGTTTCGAGTATACTCTAGCGGTTGTGGCTGAAAAC--AAT
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   2277436 269 -  4500979 CATACGTGCTTCCTTTGGTGCAGAAAGAGTTTTCATTGCAGGATGTTCCTGGAGCAgcttcaattttctttgggGTCACACATTGtccatttgaaatttctgatttgtcTTGTGGGCACTCGCAAAGCT---------GAAACTATT---ATTAATGA----CCCAGATGTCCTGTTTCTGATA----TGAACCTTTCTGAACGAGCAAGTACTTCCTCCAACACATGTTTGTCCTTGGGTACAGCTCTCTCCTGGTTTGGAATAAAGTCTAGCGGTGGTAGCTGA------AAT
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold626    121664 269 -  1189296 ---ATGTACTTCCCTTGGTGCAAACTGTGTTTTCATTGCATGATGCTCCTGGAACTACTTCAGCTTTTCTTGGAGTCACACACTGTCCTTGAGAAATTTCGGATTTGTCTTGTGGACATTCGCAGAGCTGGAATGAACGGAATAAAt-------------------aatgttttccattttaat----gAAACCTTTCTGAAAGAGCAAGCACTTCCTCCAACACATGTTTGTCCTTGGGTACAACTCTCTCCTGGTTTCGAATAGAGTCTAGCAGTGGTAGCTGAAAATGGTAT
i caeSp111.Scaffold626  C 0 I 22
s caePb3.Scfld02_0       3801511 229 +  4147112 CTTACGTGCTTCCCTTGGTGCATACAGTGTTGGCATTGCAAGAAGCTCCTGGGACTACTTCAACTTTTCTCGGAGTGATACATTGTCCTTGAGAGATTTTGGATTTATCTTGTGGGCACTCGCAAAG------------------------------------------------------------------TTTTCTAAACGAACAGGTACTTCCTCCGACGCAGGTTTGTCCTTGAGTGCAACTTTCTCCGGGCTTTGAATAGACTCTAGCAGTGGTGGCTAAAAAAGGAAT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   716131 281 +   823664 CTTACGTGCTTCCTTTGGTGCAAACGGTGTTAGAATTGCAAGAAGCACCTGGGACAGCTTCGATAATTTTGGGAGCCACGCATTGACCGttggaaatttctgatttGTCTTGTGGACACTCGCAAAGCT-----------AAAAATTGCCGTTAACATTAAGTTTCATTGTTCTTattcttcattttgaacaccTTTCTGAAAGAGCAAGTACTTCCTCCAACACAAGTCTGTCCCTCAGTACAACTCGCTCCTGGTTTGGCGTAAGCTCTAGCCGTTGAAGCTGAAAA---AAC
i caeJap4.Scaffold18194 I 1 C 0

a score=-10094.000000
s ce10.chrX              5530027 28 + 17718866 -----------GTCTTTGTTCGTTTTCTCTCTTGTTTTT
s cb4.chrX              11363185 19 + 21540570 --------------GATGTCTAATATGGTC------ATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2277705 20 -  4500979 --------------GTTGTTTGTTATGACC-----TATT
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0       3801740  5 +  4147112 -----------------GTTAA-----------------
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   716412 30 +   823664 GTGCTTTCTAACCATTTATGCATTGTGTTA---------
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    121933 22 -  1189296 I

a score=1031.000000
s ce10.chrX              5530055 111 + 17718866 -GAAAAGGCATATAAAGCTCGTGAACTAGTGTTTCGTCAATGTGAACAAACAGTT-------GC---TGAGTGCGTGCCGAGTAC----TACTGTAAGCAG--AGTGAGATTT--------GTAAACTCTA--TATTT----------------
s cb4.chrX              11363204  77 + 21540570 --------CAAATGGTGAAT---------GGTTTTAAAAGTGCGAGCAAATAAT------------------------CGGGCTCTTTGTGCTATAAGCAGCAAGTG---GAG--------GTG---------Tactt----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2277731 107 -  4500979 -AACAAAACAAGTAGTTTCC---------TGTTTTGTAAGTGCGAGCAAATAGTT-CAAAAAGT---ACTGCGCGTGCTGAGTTCTTTGTGCTGTAAGCAGCGAGTGAGAGTG--------GTG---------TACTT----------------
i caeRem4.Crem_Contig0  I 6 I 33
s caeSp111.Scaffold626    121955 116 -  1189296 -gaaaaaacaagtagACTTTGC-------TTTTCAATAAGTGCAAgcaaacattttcaaaaagc---acaGTGTGTGCCTGTTTCATTGTGTTTTAAGCAGTCAGTGAGTGTG--------ATGATT-CTA--TACTT----------------
i caeSp111.Scaffold626  I 22 I 13
s caePb3.Scfld02_0       3801755 107 +  4147112 -GAACAACAAAGTTAAATCT---------TTTTGAACAAGTGCGAGCAAACATTTCTAAAAAGC---ACGGTGCGTGCCTAGCTCTTTGTGGTATGA---------GGGTGAA--------ATGGAC-CTATTTGCTT----------------
i caePb3.Scfld02_0      I 10 I 12
s caeJap4.Scaffold18194   716442 141 +   823664 ATAATATTTGAGTTGAattc---------agt---atgtgtgtgagcaAACATTCTCAAAAGCTCTGAAAGTGCGTGTAAAGTTGTTTGTGTCATAAGCAGCGAGTGAGTGTGCGAACATTTTGATTTGTAT-TGTTTTATATTGTtccgtatt
i caeJap4.Scaffold18194 C 0 C 0

a score=-748.000000
s ce10.chrX              5530166 21 + 17718866 ----TGTGATCGAAGTGGACTATGA
s cb4.chrX              11363281 11 + 21540570 ----tttga--------gacttt--
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold626    122084 19 -  1189296 ----TTTGACCTTAGTGAACTCT--
i caeSp111.Scaffold626  I 13 C 0
s caePb3.Scfld02_0       3801874 21 +  4147112 ----TTTGACCTAGGTGAACTATCA
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18194   716583 21 +   823664 tatttttaaactgaTTTGTCT----
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2277838 33 -  4500979 I

a score=742906.000000
s ce10.chrX              5530187 903 + 17718866  
s cb4.chrX              11363294 909 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2277871 905 -  4500979  
i caeRem4.Crem_Contig0  I 33 I 29
s caeSp111.Scaffold626    122103 906 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3801895 896 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   716604 934 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-12786.000000
s ce10.chrX              5531090 32 + 17718866 TATAGAACGAA----TAGGCATA-AAAATATAAATCC-------------------
s cb4.chrX              11364203 25 + 21540570 ----TGGTGAA--------TTTAGTAaatattgtttt-------------------
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold626    123009 25 -  1189296 ca---aAGGAA--------TCTA-CACATATTCTTGA-------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3802791 31 +  4147112 catgtGAGAAAGCCAAATTTCTA-AGAATAT-----A-------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   717538 38 +   823664 -----------------CGATTA-GAAATGATTTTCTCAACTGCATATTTCATTAT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2278776 29 -  4500979 I

a score=3387695.000000
s ce10.chrX              5531122 4568 + 17718866  
s cb4.chrX              11364235 4592 + 21540570  
i cb4.chrX              I 7 I 8
s caeRem4.Crem_Contig0   2278805 4581 -  4500979  
i caeRem4.Crem_Contig0  I 29 I 37
s caeSp111.Scaffold626    123034 4537 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3802822 4549 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   717576 4632 +   823664  
i caeJap4.Scaffold18194 C 0 I 8

a score=-10148.000000
s ce10.chrX              5535690 36 + 17718866 ------------ATTTGTTATATAG-----GGAAATAC-AAAGAAAACACTGAG
s cb4.chrX              11368835 30 + 21540570 ------------ATTCATTTCAAAG-----GGCGTTGCGGGGGGAGT-------
i cb4.chrX              I 8 C 0
s caeSp111.Scaffold626    127571 39 -  1189296 ------------ATTGAATATATAGATAAAAGTTATTAGAAACAAGATATT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3807371 36 +  4147112 -------------TTCAAAACTTAG-----AATGATAATCAAGAAGATGTTAAG
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   722216 40 +   823664 atttttttagTGAATGAATACAAAT-----TTTGGTGTAAAAACA---------
i caeJap4.Scaffold18194 I 8 C 0
e caeRem4.Crem_Contig0   2283386 37 -  4500979 I

a score=280299.000000
s ce10.chrX              5535726 888 + 17718866  
s cb4.chrX              11368865 649 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2283423 656 -  4500979  
i caeRem4.Crem_Contig0  I 37 I 61
s caeSp111.Scaffold626    127610 633 -  1189296  
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3807412 711 +  4147112  
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold18194   722256 672 +   823664  
i caeJap4.Scaffold18194 C 0 I 8

a score=-10697.000000
s ce10.chrX              5536614 44 + 17718866 TTGTCACATACATAGGCAGTAG-----------------------GAAAAAAGGAGAACTGA--------GTGTG
s cb4.chrX              11369514 41 + 21540570 tttttttATAAATGAGAAGTTA-----------------------GTGGA-AGGAAA--TGC--------ACgcg
i cb4.chrX              C 0 I 261
s caeSp111.Scaffold626    128244 36 -  1189296 TTTTACAATA--------GTTA-----------------------GAAGAAACTAAACTTGC--------ATCTG
i caeSp111.Scaffold626  I 1 I 5
s caePb3.Scfld02_0       3808124 49 +  4147112 tatga-aataaaaagaatatta-----------------------GGGGAGAAGAGA--TGCTatgggtttttca
i caePb3.Scfld02_0      I 1 I 5
s caeJap4.Scaffold18194   722936 67 +   823664 TGGGGGTAAACATAGGATAGTGTTCGCTCGCTCAGGCTCAATCACGAGAAGAGCAAA--CGACG------ATGTG
i caeJap4.Scaffold18194 I 8 C 0
e caeRem4.Crem_Contig0   2284079 61 -  4500979 I

a score=1637.000000
s ce10.chrX              5536658 6 + 17718866 GTTCaa
s cb4.chrX              11369816 6 + 21540570 attcga
i cb4.chrX              I 261 C 0
s caeSp111.Scaffold626    128285 6 -  1189296 catcaa
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3808178 6 +  4147112 gagcaa
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   723003 6 +   823664 ATTCAA
i caeJap4.Scaffold18194 C 0 I 21
e caeRem4.Crem_Contig0   2284079 61 -  4500979 I

a score=291443.000000
s ce10.chrX              5536664 485 + 17718866  
s cb4.chrX              11369822 530 + 21540570  
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   2284140 511 -  4500979  
i caeRem4.Crem_Contig0  I 61 C 0
s caeSp111.Scaffold626    128291 480 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3808184 473 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   723030 510 +   823664  
i caeJap4.Scaffold18194 I 21 C 0

a score=-946.000000
s ce10.chrX              5537149 23 + 17718866 TGTAGT-AGTGGCTCCAACTCCAG---------
s caeRem4.Crem_Contig0   2284651 17 -  4500979 -------ACTGGAACCTGCTCCAT---------
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    128771 23 -  1189296 -GAAGTCAGTGGAGCCGGCTCCGT---------
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3808657 23 +  4147112 -GAAGTCTGTGGTACCAGCTCCAt---------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   723540 23 +   823664 ----------AGTACCAGCACCTAGAACTTATG
i caeJap4.Scaffold18194 C 0 I 4
e cb4.chrX              11370352 35 + 21540570 I

a score=453968.000000
s ce10.chrX              5537172 638 + 17718866  
s cb4.chrX              11370387 610 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2284674 639 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    128800 639 -  1189296  
i caeSp111.Scaffold626  I 6 C 0
s caePb3.Scfld02_0       3808680 644 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   723567 681 +   823664  
i caeJap4.Scaffold18194 I 4 I 23

a score=4389.000000
s ce10.chrX              5537810 16 + 17718866 AAGG---------AAATCAAAAGAT
s cb4.chrX              11370997 25 + 21540570 aaaaaaagccaTGAAATCaaatgat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2285313 15 -  4500979 gaa----------aaatcgaaagat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    129439 15 -  1189296 AAT----------GAGTCAAAACAT
i caeSp111.Scaffold626  C 0 I 23
s caePb3.Scfld02_0       3809324 12 +  4147112 -------------GAATCAAAAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   724248 23 +   823664 I

a score=600.000000
s ce10.chrX              5537826 1 + 17718866 C
s cb4.chrX              11371022 1 + 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2285328 1 -  4500979 c
i caeRem4.Crem_Contig0  C 0 I 24
s caePb3.Scfld02_0       3809336 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   724248 23 +   823664 I
e caeSp111.Scaffold626    129454 23 -  1189296 I

a score=-111.000000
s ce10.chrX              5537827 6 + 17718866 CGTTTT-
s cb4.chrX              11371023 6 + 21540570 aatttt-
i cb4.chrX              C 0 I 8
s caePb3.Scfld02_0       3809337 7 +  4147112 AGTTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   724248 23 +   823664 I
e caeSp111.Scaffold626    129454 23 -  1189296 I
e caeRem4.Crem_Contig0   2285329 24 -  4500979 I

a score=-1946.000000
s ce10.chrX              5537833 360 + 17718866 AATGGACTAAGGAGAATCATTTTTATTTTTAATATTGGATGAAGTTTTAAAATTTCAGAAAATTACGTCAGAAAGATGTTTGAAAACAAATTTTATCGGAGAAACCTACCTTATTGTATA--TGTTATACATTTATTTTTTGCTTATAGTTTCAGAAAAAGTTAATGAAAACAAACAATGAAAAATTATATAAAAATGAATTCACTTTCACAaactgttctaatttttgagttatattcatttgaaaatatgacaaaatcaaaagggggttccattttgggtagcactgtaTTGTTGTGTAAATATTACTTTTAATCACACTTTTCAGAAATTTCCAGACTAATTTAAAATTTCAGTTTTCA
s caePb3.Scfld02_0       3809344 244 +  4147112 GAT---------------ATTATTAAATGTAATACTGG-------------------------------TGTAATAAGTTCAATAACA-----------------CTTTCTGATTGCATAACCTTCAAACAATCAAATATTACTCTCcatcttagaaaaaa--aatcaagttacaaatttgaaaactgaacaaaactaaatt--------------------------------------tcaaaaaatat----aaactaGGAGAATGGACCACT---AATAAGACAAGTTTGT--GATAAAGCTGACTTTC--TCAAAACTTGGTGACA-CTCAAAACGATCTCAAGAat---gctttca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   724248  23 +   823664 I
e cb4.chrX              11371029   8 + 21540570 I
e caeSp111.Scaffold626    129454  23 -  1189296 I
e caeRem4.Crem_Contig0   2285329  24 -  4500979 I

a score=-1130.000000
s ce10.chrX              5538193 21 + 17718866 TACAATTTAATTC---GTTATGCT--
s caePb3.Scfld02_0       3809588 24 +  4147112 gaaaattgaaattcaagaaaagcT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   724271 20 +   823664 TATAGTGTAACTT------GTGCTTT
i caeJap4.Scaffold18194 I 23 C 0
e cb4.chrX              11371029  8 + 21540570 I
e caeSp111.Scaffold626    129454 23 -  1189296 I
e caeRem4.Crem_Contig0   2285329 24 -  4500979 I

a score=546.000000
s ce10.chrX              5538214 1 + 17718866 A
s caeRem4.Crem_Contig0   2285353 1 -  4500979 a
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold626    129477 1 -  1189296 A
i caeSp111.Scaffold626  I 23 C 0
s caeJap4.Scaffold18194   724291 1 +   823664 A
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3809612 0 +  4147112 C
e cb4.chrX              11371029 8 + 21540570 I

a score=464492.000000
s ce10.chrX              5538215 1712 + 17718866  
s cb4.chrX              11371037 1676 + 21540570  
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2285354 1742 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    129478 1721 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3809612 1811 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   724292 1655 +   823664  
i caeJap4.Scaffold18194 C 0 I 65

a score=-3845.000000
s ce10.chrX              5539927 50 + 17718866 ---------GAGAAAACAGTGTG----------------CTTTTTTTTGTAGATGTGCTCAGTTAAAATCGGATA
s cb4.chrX              11372713 28 + 21540570 aga------aaaattataatgaGCAAAGAGTGGA-----------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2287096 67 -  4500979 tgat-----gaaaagaCAACGAGAAAACGATAGATCactagtttttt--gag-ttttcgggAAAATAATCACCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131199 72 -  1189296 TGATTG---GAAgagagaactgaaaaaacagagatcGTCCgcttttttcgagtttcGCGGAGTTataatcagaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811423 74 +  4147112 TGATAGCGAGAAGAGACAATTTGGAAAACAGAgattgctcaatttttt-gaggttttcggAGTTATAATCAGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   725947 65 +   823664 I

a score=84975.000000
s ce10.chrX              5539977 357 + 17718866  
s cb4.chrX              11372741 411 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2287163 428 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131271 410 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811497 408 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   726012 358 +   823664  
i caeJap4.Scaffold18194 I 65 I 82

a score=7846.000000
s ce10.chrX              5540334 10 + 17718866 TGAATTTAGT
s cb4.chrX              11373152 10 + 21540570 taaaTTTAGT
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   2287591 10 -  4500979 TAAATTTAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131681 10 -  1189296 tAATTTTAGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811905 10 +  4147112 tAAATTTAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   726370 82 +   823664 I

a score=-4362.000000
s ce10.chrX              5540344 24 + 17718866 GATTCTTTGGTATCTCTTAGACTT
s caeRem4.Crem_Contig0   2287601  8 -  4500979 GA-----AGATGG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131691 11 -  1189296 --------GATGGAT-----ACGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811915 16 +  4147112 --------GATGAATCTAAGGAGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   726370 82 +   823664 I
e cb4.chrX              11373162 46 + 21540570 I

a score=11377.000000
s ce10.chrX              5540368 39 + 17718866 ----TATCGCATA-GGATATTCAACAA-TTACTATATGTTTGCCA
s cb4.chrX              11373208 36 + 21540570 ----TATCG-----GAGAAATCAACCCGTTACTATATGTTTGTCA
i cb4.chrX              I 46 I 43
s caeRem4.Crem_Contig0   2287609 39 -  4500979 -----ATCTAGATCAAGAAATCAAGCT-TTACTATATGTTGACCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131702 39 -  1189296 TATCTATCG-----GGAGAATCAACAA-TTACTATCTGTTTGCCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811931 38 +  4147112 gataaatc------agaaaatcaacaa-ttaCTATATGTTTGCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   726370 82 +   823664 I

a score=-235.000000
s ce10.chrX              5540407 35 + 17718866 -------------------------------------TTATTGCTGAGGGTCAATAGTGCCAAAAAGGGATA
s caeRem4.Crem_Contig0   2287648 57 -  4500979 TTTTTGGGAAGTGAGGTGTTTG---------------AGGTGGTCAACGGTGGCAAACATGGAATTGGGATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131741 69 -  1189296 --TAAAGAAAGTGATCTTCTTGTCTAAACTTCCGTTCTCTTCGCT-TATATGgtaaatataaaaaagggATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3811969 70 +  4147112 --TTAAGGCAGTGATCTTCCTGTCCAAACTTTCATGGCAGTGGCTATAGATGGCAAATAGGAAAATGGGATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   726370 82 +   823664 I
e cb4.chrX              11373244 43 + 21540570 I

a score=-4322.000000
s ce10.chrX              5540442 4 + 17718866 ----GTC-T
s caeRem4.Crem_Contig0   2287705 4 -  4500979 ----GGCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131810 3 -  1189296 ----GGC--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812039 3 +  4147112 ----GGC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   726452 4 +   823664 ATCT-----
i caeJap4.Scaffold18194 I 82 C 0
e cb4.chrX              11373244 43 + 21540570 I

a score=34293.000000
s ce10.chrX              5540446  80 + 17718866 CAA-------------------AGGTGAAAAGGAGGGAG-TAATTGACA--CTGTACAAACA-AGACAATGCCCATATTTTGACACATGTCAAAA---------AGTAGCTG
s cb4.chrX              11373287 100 + 21540570 CAAACATGAAAATGGGATTGGCACGCGTCAAGAA--AGG-TTATTAAAATCTTATACAAATAAAGACAATGTCCTTATTTTGACATGTGTCAAAA---------GACAACTG
i cb4.chrX              I 43 I 49
s caeRem4.Crem_Contig0   2287709  74 -  4500979 -----------------------CGCGTCAAGAA--TAG-TTACTAAGA--CTGTTCAAATAGAGA-AATGCCCTTATTTTGACACATGTCAAAA---------GACAACTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131813  75 -  1189296 ----------------------AAGCGTCAAGAA--CAG-TAATGGAGA--CTGTACAAATA-GAACAATGCCCATATTTTGACACATGTCATAA---------AAGAACTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812042  76 +  4147112 ----------------------AAGTGTCAAGAA--CAG-TAATTGATA--CTGTTCAAATAGGAACAATGCCCTTATTTTGACACATGTCAAAA---------GACAACTG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   726456  84 +   823664 -------------------CATAACTGAATGGAG--CAGATGAGTGCTA--GTGTGCACACA-----AGTGGGTTTATTTTGACACATGTCAAAACGCctaaatagcaacaa
i caeJap4.Scaffold18194 C 0 C 0

a score=-12112.000000
s ce10.chrX              5540526 79 + 17718866 GAGAGAGAGCAAAGGGCAAAGACAATACCGGATATAATTTTCTTGTAGAACAAAATTCG------AATGAGAAAGGGC-------CGGATCA
s caeRem4.Crem_Contig0   2287783 60 -  4500979 --CAAGATGGAAAGTGCAC---CAACACCGGATAT------------GAAC--AGTTCGGTTGGCAATGGCAGAGAG--------CG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131888 67 -  1189296 ---AAGATGAAAAGTGCAG--GCACTACCGGATTTA----------TGGCC--TATTCGAGC-acaatgaaagaaaaa-------tggatca
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812119 61 +  4147112 ---AAGAAGGAAAGGGCAA--GCGCTACCGGATATg----------gga----------------aatgaaggaaaaatgagGGTTGGATCA
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   726540 56 +   823664 aaaacattgcACCGGTCAG--TTAATGGCATGTCCAAAATTGTTGCGGA----------------AATAAATAA------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11373387 49 + 21540570 I

a score=-38960.000000
s ce10.chrX              5540605  78 + 17718866 ATGAGATCA--------ATATGCTAGGAATCTTAAG------TAGTCATAGGAATTTTATGAGAAATAA----------------------GGAAACATACTTTCATTTTGGTG
s cb4.chrX              11373436  60 + 21540570 TTGAGATTA--------ACAAGCTCAG-----TTTC---------TTTGGAGAttattttcagggaaaaatc------------------aGGGgccaaa--------------
i cb4.chrX              I 49 C 0
s caeRem4.Crem_Contig0   2287843 104 -  4500979 AAGAGATCATTTAG--TACAAGCTGCA-----TGTACATGTTAAGCTTGGAAAAAAGGCTGAGTGAGAAATCTTCTAATAATACAAATGTGGAAAACAAACGTGAATGTTG---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131955  40 -  1189296 agaaga-----------gcaaaat------------------gattttgagaTAGATGAAACGTTTTCG---------------------------------------------
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3812180  47 +  4147112 ATGGGA-----------ACAAAATTTG-----TGAG------GAGTTATGGATACATTTTGTTTTACCG---------------------------------------------
i caePb3.Scfld02_0      C 0 I 116
s caeJap4.Scaffold18194   726596  48 +   823664 CCTAGGTCACTATGTTTGTTAGTTGTT-----TATT------ACTATTGAAATATATTT-------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-33472.000000
s ce10.chrX              5540683 144 + 17718866 ACAGCTTATAGCTCGGTTGTATTAAGTTTTATCAACAAATGTTTCACTAATAATTTGGCAG-TTGA--CAATTTTTTATACAATTTTTTTATCTCTCCAGATACTTTTTGCTGCCAAAATGAAGCAAGGA--ACAGCAAGTC------TTATAGG-------
s cb4.chrX              11373496 101 + 21540570 --aatctgag--------------------aattgtatactttccattttttatt--gCTG-TCTACACACATTTTTACGTAACCATCTT---------TGTGACTGTT-----ATAAATAAATCAATAC--GCAGTAAATG--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2287947 103 -  4500979 --AGTTTAAA--------------------ATGTTTGGATTTTTAGCTTTCTATT--GCAGATGAACTCACCGtttt-tttAATCTTATT---------CATAATTTAT-----ATACATAGTATAACGTCACCAGAAAAAC--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    131998  99 -  1189296 -------ATG--------------------ATTATCAGACTTCAGAAtatgaaca--aaaa-tgaa--------tttaagCAAGGACGTT---------TGtcgtatctgaaaaattgataaccaaaaat--tgagaaaacctattca--------------
i caeSp111.Scaffold626  I 3 C 0
s caeJap4.Scaffold18194   726644  86 +   823664 ----------------------------CAGAATACATATCTGGTGTATTTTATT--CCAA-TATA--------TTTCTGC------------------CGTGGCTTAG----Cttgaaaaaaacgagaa--atgaTAAGAC-------------TTGCTTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3812227 116 +  4147112 I

a score=212402.000000
s ce10.chrX              5540827 534 + 17718866  
s cb4.chrX              11373597 515 + 21540570  
i cb4.chrX              C 0 I 68
s caeRem4.Crem_Contig0   2288050 502 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    132097 476 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812343 505 +  4147112  
i caePb3.Scfld02_0      I 116 C 0
s caeJap4.Scaffold18194   726730 346 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=1179.000000
s ce10.chrX              5541361 21 + 17718866 ----GTGTAAGCTTGCGGTGTGCAA
s caeRem4.Crem_Contig0   2288552 18 -  4500979 ----gtCTGAAGTCTTGTTGTT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    132573 18 -  1189296 ----gtCTAAAGGCTTGTTGTT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812848 18 +  4147112 ----gtCTAAAGTCTTGTTGTT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   727076 17 +   823664 GACAGTGC---GTCTTGTTA-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11374112 68 + 21540570 I

a score=74317.000000
s ce10.chrX              5541382 113 + 17718866 GAAGGATAGATTTCGAAAA-TAAGATTGTCACAT-ACAA-------TATCCGACGGGGGGAGAGGG----GCACGATTTTGGCTGTGAAAATA-----GAAACGAACGCACACTTGAGTGGCAAAACTCGG
s cb4.chrX              11374180 121 + 21540570 GAAGGAtggatttcgaaaa-tgaaGTTGACACATAACAA------ATGACGGAGAAGAAGCAAGTG-CGGGTAAGATTT--GCACTGAAAATAGAAACGAAACGAACGCACACTTGAGTGGCATAGCTCGG
i cb4.chrX              I 68 C 0
s caeRem4.Crem_Contig0   2288570 108 -  4500979 GAAGGAtggatttcgaaaa-tgaagttGACACAT-ACAA------------GAGAGGGAGCAAA-G-AGGGCAagattt--gcactgaaaata-----gaaacgaACGCACACTTGAGTGGCAAAGCTCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    132591 123 -  1189296 GAAGGATggatttcgaaaactgaagTTGACACAT-ACAAAAGGGAGTTAGAGATAGGAAGAGgacggagagagagagtc--gcactgaaaata-----gaaacgaACGCACACTTGAGTGGCATAGCTCGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3812866 116 +  4147112 GAAGGatggatttcgaaaa-tgaagttgacACAT-ACAAGAGG--GTTAAGGAGAAAGGGGAAACG----GGGAgattt--gctctgaaaata-----gaaacgaACGCACACTCGAGTGGCAAAGCTcgg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   727093  94 +   823664 AAAGGATGCATTTC-AAAA-CAAAGTTGCCACAT-ACCC--------------------------C-TGAAAAGGATTT--GCACTGGAAATA-----GAAACAAACGAGCACTCGAGTGGCCTGGTTCGG
i caeJap4.Scaffold18194 C 0 I 1133

a score=8958.000000
s ce10.chrX              5541495 19 + 17718866 GTTTCAAAATTGA-ACTGTT
s cb4.chrX              11374301 19 + 21540570 GTTTCAATATTAA-ACTATT
i cb4.chrX              C 0 I 1048
s caeRem4.Crem_Contig0   2288678 19 -  4500979 GTTTCAATATCGA-ACTGTT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    132714 19 -  1189296 GTTTCAAAATCTG-ACGGTT
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3812982 20 +  4147112 gtttcaaaaattgaacagtt
i caePb3.Scfld02_0      C 0 I 519
e caeJap4.Scaffold18194   727187 1133 +   823664 I

a score=731.000000
s ce10.chrX              5541514 7 + 17718866 GGCTTTG-
s caeRem4.Crem_Contig0   2288703 7 -  4500979 GGCTTTG-
i caeRem4.Crem_Contig0  I 6 I 186
s caeSp111.Scaffold626    132739 8 -  1189296 GGCTATGG
i caeSp111.Scaffold626  I 6 C 0
e caePb3.Scfld02_0       3813002 519 +  4147112 I
e caeJap4.Scaffold18194   727187 1133 +   823664 I
e cb4.chrX              11374320 1048 + 21540570 I

a score=560.000000
s ce10.chrX              5541521 18 + 17718866 CAAATATA-GGATTCCAGG
s caeSp111.Scaffold626    132747 19 -  1189296 CGGATATATGTATCTCAGG
i caeSp111.Scaffold626  C 0 I 270
e caePb3.Scfld02_0       3813002 519 +  4147112 I
e caeJap4.Scaffold18194   727187 1133 +   823664 I
e cb4.chrX              11374320 1048 + 21540570 I
e caeRem4.Crem_Contig0   2288710 186 -  4500979 I

a score=0.000000
s ce10.chrX              5541539 1382 + 17718866  
e caePb3.Scfld02_0       3813002  519 +  4147112 I
e caeJap4.Scaffold18194   727187 1133 +   823664 I
e cb4.chrX              11374320 1048 + 21540570 I
e caeSp111.Scaffold626    132766  270 -  1189296 I
e caeRem4.Crem_Contig0   2288710  186 -  4500979 I

a score=61.000000
s ce10.chrX              5542921 8 + 17718866 GAGTGATG
s caeSp111.Scaffold626    133036 8 -  1189296 GAATCGTC
i caeSp111.Scaffold626  I 270 C 0
e caePb3.Scfld02_0       3813002 519 +  4147112 I
e caeJap4.Scaffold18194   727187 1133 +   823664 I
e cb4.chrX              11374320 1048 + 21540570 I
e caeRem4.Crem_Contig0   2288710 186 -  4500979 I

a score=16471.000000
s ce10.chrX              5542929 82 + 17718866 TAATTGCTTCAATCATTTCTTGTTGTGCTCTTTTGCAA---CAACAACAAATGGAAC----TCTTCTA-CTTTCCACTTTATATCC---GGCC
s cb4.chrX              11375368 81 + 21540570 TAATTGCGccaataattttcattttgccTTCCATCTGC---AAATAACAAATGGAACGTGTTGTTCGA-TT-----CTTTATTTCC---GGAA
i cb4.chrX              I 1048 C 0
s caeRem4.Crem_Contig0   2288896 75 -  4500979 TAATTGCGTCaatcattt---cttcattttctcgatGC---AACAACAAGATGGAAC----TCTTCGACTC-----CTCTATATCC---GGAA
i caeRem4.Crem_Contig0  I 186 C 0
s caeSp111.Scaffold626    133044 80 -  1189296 TAATTGCGtcaatcatttc-tcttttgctGTGCATCAA---GAGCAACACACAGAAT---TCGTTCGA-CT-----ATTTATTTCCGGAGGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3813521 81 +  4147112 TAATTACGTCAATCATTTCTTCCTTAGCTGCTCATTGACTGCAGCAACACACAGAAC---TCGTTCAA-TT-----CTTTATTTCC---GGAA
i caePb3.Scfld02_0      I 519 C 0
e caeJap4.Scaffold18194   727187 1133 +   823664 I

a score=206344.000000
s ce10.chrX              5543011 327 + 17718866 ACATTT-------CGTCGGCTTCCTGTTC-TTAGCTCCTTCACTATTTAT------CTTCAAAACC----TTGACCACGCAATTAATTTGAATATTCAACCCGTTTTTCCGGGAAGCAGCGAAGACATCG-TGAGTGAGTGACAGGGCC---GACCCGAAAACTCGACTAATTTTACTTTCTT------C-TACGATGTTCTG-TGCCTCACCTTCAAGCT---G----------GGACCACGG-----GCCATTTCTCCTTCTTCTCACTCAC------ACA-CCCTTCCCATCTT-TCGTCCTCATTCATTTTTT--GCGTTAG--AGCACTCACCACCACCACCAA-----CACCAGCTC-CCTTCA-ATTGCATGCTTT--CAACTTTTCGG
s cb4.chrX              11375449 358 + 21540570 CGAGTTGCTGCTTGGCTATGTTCTTCTCTGTTTTATCCTTTGCTCGACCT------CTTCCTACCCAGCTCTGACCATGCAAttaatttgaatattcagtCGGTTTTTCCGGGA---AGCGAAGACATCGCTGAGTGAGTGACA-GGTCTCGACCCCGAAAACTTGACTAATTTTACTTTCTTCTTTTGC-TGTGATGTTCTG-TGCCTCACCTTCAAGCTCTGG----------GCACCActgacttcttttttttttcttcttctcgctCTC-------CAACCCCTTCCATCTTCCCTtcctcattcatttttttgggatGGAGCAGCACTCACCACCATCACCAAACCCACCCCAAATA-CGCCCA------ATGCTTT--CGACTTTTTGA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2288971 327 -  4500979 CGAGTTGCTTCTTCgcctttcttttctttttcatcttctccacTAAATAT------CTTCAAAACC----TTGACCATGCaattaatttgaatattcaacCCGTTTTTCCGGGA---AGCGAAGACATCG-TGAGTGAGTGACA-GGCC---GACCCGAAAACTCGACTAATTTTACTTTCTT------C-TACAATGTTCTGTTGCCTCACCTTCAAGCT---G----------GGACCACGG----------CTTCTCCTCTTCACACTCAC------ACTCCCCTTTCCATCTT-CCttcctcattcatttttt--gcattgg--AGCActcaccaccaccaccaa------cccCAATA-CGCCCA-ATTGCAtgcttt--caactttttgg
i caeRem4.Crem_Contig0  C 0 I 41
s caeSp111.Scaffold626    133124 344 -  1189296 CAACTTGATCGTCctcctttttcctcttcatctAGTGCTTCACTATTTAT------CCTCAAAACC----TTGACCAGGCaattaatttgaatattcaaccCGTTTTTCCGGGAAG-AGCGAAGACATCG-TGAGTGAGTGACA-GGCC---GACCCGAAAACTCGACTAATTTTACTTTCTT------C-TACGATGTTCTG-TGCCTCACCTTCAAGCT---G----------GGACCATag-cttctcttcttcttcttcttctcactctc----caccacccctttccatctt-ccttcctcattcatttttt--gcgtTTG--AGCActcaccaccaccaccaa---cCCCTTTTCTATCGTCCGGATTGCATGCTTT--CGACTTTTTGG
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3813602 330 +  4147112 CAAGTTGCTCG-----cggtttcttcttcatcttcttgtcCACTATCTCTATCTAACCTCAAAACC----TTGACCAGGCAattaatttgaatattcaaccCGTTTTTCCGGGA---AGCGAAGACATCG-TGAGTGAGTGACA-GGCC---GACCCGAAAACTCGACTAATTTTACTTTCTT------CTTACGATGTTCTT-TGCCTCACCTTCAAGCT---G----------GGACCACAG-CTTC------TCCTCTTATTCTCACTC--------ACACCCCTTTCCATCTT-CCttcctcattcatttttt--gcgtTGG--AGCACT---CACCACCACCAA---CCTCCTTCCTA-CGTCCCAATTGCATGCTTT--CGACTTTTTGG
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   728320 309 +   823664 -------------------ACATTTCGCCGCCCTCACCCTCACT------------CTCCGGAACC----TTCGCCATGCAATTAATTGGAATATTCAAACCGCTTTTCCGGGA---AGCGAAGACATCG-TGAGTGAGTGACA-GGTC---GACCCGAAAACTTGACTAATTTCGCCTTCTT------G---CGATGTTCTC-CGTCTTATCTTC-ATCT---GGAAGAATGAAGGACCACGA-CTTCTTCGCCGCCTTCTCTTCCTGCAAAAAATACTCCATCTCCTTTCCTCCC-Tttctttcattcatttttt--gtggtt---AGCACTAGCCACTCCTACCCA---------------CC-----ATTGCATGCTTTTCCAACTTTT---
i caeJap4.Scaffold18194 I 1133 C 0

a score=-1795.000000
s ce10.chrX              5543338 32 + 17718866 -----AGGTCCGACCTACCCGACTTCAGCGTCTAGTG---
s cb4.chrX              11375815 22 + 21540570 -----ATATATTACC----------CAAGATTTAGGG---
i cb4.chrX              I 8 I 19
s caeSp111.Scaffold626    133480 22 -  1189296 -----ATATTTCACC----------CAAGTTCTAGAG---
i caeSp111.Scaffold626  I 12 I 8
s caePb3.Scfld02_0       3813942 22 +  4147112 -----ATATTTCACC----------CAAGTTTCCTAG---
i caePb3.Scfld02_0      I 10 I 9
s caeJap4.Scaffold18194   728629 27 +   823664 GGTCCGGGTGTTACT-------------GCTTTAAAAAGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2289298 41 -  4500979 I

a score=16088.000000
s ce10.chrX              5543370 42 + 17718866 TGATAAATTATCAACA----TTTCTCTATTTTCCGGATTGCTGACC
s cb4.chrX              11375856 36 + 21540570 TGATAAATTATCAAGAATCTCGT------TTCCGG----ACTGACC
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   2289339 32 -  4500979 TGATAAATTATCAGAA----CTT------TTTGAG----ACTGACC
i caeRem4.Crem_Contig0  I 41 C 0
s caeSp111.Scaffold626    133510 34 -  1189296 TGATAAATTATCAAGA----TTTC----GCTGCCG----GCTGACC
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       3813973 33 +  4147112 TGATAAATTATCAAGA----TTTC-----TTGTCG----GATGACC
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18194   728656 33 +   823664 AGGCGGGTTATCAAGA----TTTA-----TTTCCG----GCTGACC
i caeJap4.Scaffold18194 C 0 I 27

a score=-2097.000000
s ce10.chrX              5543412 23 + 17718866 AG-GCCCCCAGAACCGGCAAATAC
s cb4.chrX              11375892 12 + 21540570 ACTGC------------CGAATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2289371 11 -  4500979 GC-AC------------GAAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    133544  9 -  1189296 AG--C-------------AAATAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3814006 10 +  4147112 AC--C------------AAAATAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   728689 27 +   823664 I

a score=196610.000000
s ce10.chrX              5543435 250 + 17718866 AATTTATGGTTAC-TTTTTTGGAG--AGCACCCGCCATTCATCTGTGTATT---------------TG------TGCGGTGCTTCAAAT-TTTTTTTCC-----CAGCGTCCCCACTACTCGTCCTAACCCGGGA-GGCTCGACCCTTTGCGCATGCTCCCTAAAACTTCAAGTTCCCGCTAATTGTTCCCCTGAGCATCAGATTCAATTGTGCTCCTCATGCTTATTCACAACATTCTTTTTTCTTTATTTTTGTTGCTTCTACTTTG-------------CGC----GTTCTGATT-------
s cb4.chrX              11375904 281 + 21540570 TATTTATGGATACGTGTTTTTGGGATAGAATGCAATGTGCATctgtgtcttcttcttctgtttatGTGTTGGGCTGCGGtgcttcaaag---ttttttt----------tccacacTACTCGTCCTAACCCGGGGTGGCTCGACCCTTTGCGCGTGCTCCCTAAAACTTCAAGTTCCCGCTAATTGTTCCCCTGAGCATCAGATTCAATTGTGCTCCTCATGCTTATTCACAACATTCTATTCtttccacttcttcttcttccctctttattttttccactccgt----gttcaaatt-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2289382 248 -  4500979 TATTTATGGATACGTGTTTTTGGG--AGAATGTGATATGCATCTGTGTCTG-------TGTTTATGTG------TGCGGTGCTTCAAAG---TTTTTCC-----CAACGTCCTCACTACTACCCCTAACCCGGA--GGCTCGACCCCTTGCGCATGCTCCCTAAAACTTCAAGTTCCCGCTAATTGTTCCCCTGAGCATCAGATTCAATTGTGCTCTTCATGCTCATTCACAACATtctattctttcttcttttttttctt---------------------cgt----gtTCAGATT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    133553 253 -  1189296 TATTTATGGATACGTGTTTTTGAG--AGAACTTGTGATGCATCTGTGTCTG-------TGTTTATGTG------AGCGGTgcttgaaagttttttttcc-----caaCGTCCTCTCTACTCGCCCTAACCCGGA--GGCTCGACCCCTTGCGCATGCTCCCTAAAACTTCAAGTTCCCGCTAATTGTTCCCCTGAGCATCAGATTCAATTGTGCTCCTCATGCTTATTCACAACAttctattctctct--ttctttttttc---------------------cgctCGTGTTCAAATT-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3814016 245 +  4147112 TATTTATGGATACGTGCTTTTGGA--AG--CTTGTGATGCATCTGTGTCTG-------TGTTTATGTG------TGCGGtgcttcaaag--ttttttcc-----caACGTCCTCACTACTCGTCCTAACCCGGA--GGCTCGACCCCTTGCGCATGCTCCCTAAAACTTCAAGTTCCCGCTAATTGTTCCCCTGAGCATCAGATTCAATTGTGCTCCTCATGCTTATTCACAACAttctattctcttt--ctttttttctt---------------------cgc----gttcagatt-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   728716 233 +   823664 AATTTATGGTT------TTTTGGA----------------atctgtttgtt-------tgtttgtgtg------aGCCAAGCTTCAAAG--ACTTTTCCGTGGCCCTCGTCCCCACTGCTCGTCCC----------AACTTGACCCCCCGCGCATACTCCCTAAAACTTCGAGTTCTCGCTAATTGTTCCCCTGAGCCTCGGATTCAATTGTGCTGCTCATGCTcattcacaaaatttt-ttcttttt--gtttttttcga---------------------caCTCT-GTTCTATTTTCTGGCT
i caeJap4.Scaffold18194 I 27 I 93

a score=-783.000000
s ce10.chrX              5543685 85 + 17718866 TCA---TAGTTCATAACGCGCTTA--TTTTTC----AATTTG-----TTTTTTGAAGCTTCGTGTAAGTAGGGGGAGTGGGACC-----TAAA-----TAAA-ACTGATC
s cb4.chrX              11376185 72 + 21540570 tcaattttgttcataacg---ttt-tttcttcaagaaaatttttccatttttt------ctgtt----------ggGTTGTCCC-----AAAC-------------AGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2289630 79 -  4500979 TCA---TGGTTCATAACGCTCTCC-TCTTTTC----AactcgttttatttttctccacACTACT------------GTAGACTC-----AAAC-----TGAA-ATGGGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    133806 85 -  1189296 TTG---TGGTTCATAACGCTCTTC-------C----AACTCTTG---TTTTTTGCCACTTTCTT--AGACGAGTGTACGTGTTC-----GAAGTCAAGTGAA-ATCGGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3814261 93 +  4147112 tca---tggttcataacgcttttctttttttc----aagtcttgt--ttttttgtccCATTCTT--------GTGTGTGGACTCAAATAAAAACCCGGTGAACACCGGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   728949 93 +   823664 I

a score=268797.000000
s ce10.chrX              5543770 612 + 17718866  
s cb4.chrX              11376257 633 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2289709 614 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    133891 590 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3814354 607 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   729042 631 +   823664  
i caeJap4.Scaffold18194 I 93 C 0

a score=3536.000000
s ce10.chrX              5544382 5 + 17718866 CAGGT
s cb4.chrX              11376890 5 + 21540570 CTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2290323 5 -  4500979 CTGGT
i caeRem4.Crem_Contig0  C 0 I 45
s caeSp111.Scaffold626    134481 5 -  1189296 CAGGT
i caeSp111.Scaffold626  C 0 I 38
s caePb3.Scfld02_0       3814961 5 +  4147112 CAGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   729673 0 +   823664 C

a score=399.000000
s ce10.chrX              5544387 9 + 17718866 AATTTATAG
s cb4.chrX              11376895 9 + 21540570 TAGATATAG
i cb4.chrX              C 0 I 27
s caePb3.Scfld02_0       3814966 3 +  4147112 ------TAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   729673 0 +   823664 C
e caeSp111.Scaffold626    134486 38 -  1189296 I
e caeRem4.Crem_Contig0   2290328 45 -  4500979 I

a score=-1580.000000
s ce10.chrX              5544396 284 + 17718866 AGATTTGTT--AAAATTTGAAATATGATACAAAAATttgattaaggtacatttaaagcaaataaataaccataaatcacagaaattggttactt----aacggct-atacaggtcttttaaataaaaataaaaacgtaacatagacgatccaaatatgcaataaaggatgataattagataaaagttaatttccaacagccgggacactgaaaaattgacaaaatttaattagctgaacttttcgaaattttgaagttcctgaagtcaaaacttttgattttttttgagaa
s caePb3.Scfld02_0       3814969 200 +  4147112 GCACGGGCTCGAAAGTTTACGACTTATTA-GATAATTCGAC-----TTCATCTaatataagt----------------------tttttttttttggaaacatctAATATGAGTTATTCAGATGA----AAAGATATGGTTTAACCGTCACA-------ATTAGAGTATGATA------------------------------------GAGAAATT-CCGGAATTTTGCTAGTCt--ctctccaaaattttg--gttc-----------atttttgataggttttaaaga
i caePb3.Scfld02_0      C 0 I 170
e caeJap4.Scaffold18194   729673   0 +   823664 C
e cb4.chrX              11376904  27 + 21540570 I
e caeSp111.Scaffold626    134486  38 -  1189296 I
e caeRem4.Crem_Contig0   2290328  45 -  4500979 I

a score=0.000000
s ce10.chrX              5544680 224 + 17718866 tctttattacgaaattcgattgtttgagcacaaatttcaatcaataccttcaaaacacttcgaaccttcagtccacctttaaATATAAAGTTCAATACTGAAATATAATTTTAACGGTTTGTTACATTTTTGCACCGCTTAAAAATGTTCCAGGTAATAGTTTTGTGTCAATCGGACCAGCAAAAAACAGGTAACTGAATATTTAAAAAAACAAATTTGACATT
e caePb3.Scfld02_0       3815169 170 +  4147112 I
e caeJap4.Scaffold18194   729673   0 +   823664 C
e cb4.chrX              11376904  27 + 21540570 I
e caeSp111.Scaffold626    134486  38 -  1189296 I
e caeRem4.Crem_Contig0   2290328  45 -  4500979 I

a score=194.000000
s ce10.chrX              5544904 29 + 17718866 TTTTAATAATACCTTGTCATGTGGACCGA
s caePb3.Scfld02_0       3815339 21 +  4147112 TTTCAATGAT-CCTTCTTGTGT-------
i caePb3.Scfld02_0      I 170 C 0
e caeJap4.Scaffold18194   729673  0 +   823664 C
e cb4.chrX              11376904 27 + 21540570 I
e caeSp111.Scaffold626    134486 38 -  1189296 I
e caeRem4.Crem_Contig0   2290328 45 -  4500979 I

a score=391.000000
s ce10.chrX              5544933 3 + 17718866 TTT
s cb4.chrX              11376931 3 + 21540570 ttt
i cb4.chrX              I 27 C 0
s caePb3.Scfld02_0       3815360 3 +  4147112 TAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   729673 0 +   823664 C
e caeSp111.Scaffold626    134486 38 -  1189296 I
e caeRem4.Crem_Contig0   2290328 45 -  4500979 I

a score=1413.000000
s ce10.chrX              5544936 3 + 17718866 TTT
s cb4.chrX              11376934 3 + 21540570 ttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2290373 3 -  4500979 TTC
i caeRem4.Crem_Contig0  I 45 C 0
s caeSp111.Scaffold626    134524 3 -  1189296 TTC
i caeSp111.Scaffold626  I 38 C 0
s caePb3.Scfld02_0       3815363 3 +  4147112 TTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   729673 0 +   823664 C

a score=416699.000000
s ce10.chrX              5544939 555 + 17718866  
s cb4.chrX              11376937 556 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2290376 567 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    134527 547 -  1189296  
i caeSp111.Scaffold626  C 0 I 16
s caePb3.Scfld02_0       3815366 542 +  4147112  
i caePb3.Scfld02_0      C 0 I 889
s caeJap4.Scaffold18194   729673 546 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-6473.000000
s ce10.chrX              5545494 45 + 17718866 ATTTTTCTTGCT-TTT---TTTT----GAGAGTTTTCAATCTGTG-----CTCCCTAT
s cb4.chrX              11377493 38 + 21540570 gttatttt-----ttc---actttttgaatttttttat------------ttttcgaa
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2290943 39 -  4500979 tttttctttgctGTCC---ACTT----GATTGGTTTCA------------TTCTCGAA
i caeRem4.Crem_Contig0  C 0 I 2103
s caeSp111.Scaffold626    135090 45 -  1189296 tttagtttcacttttc---aatt----gacCAATTTAAA-CTGTG-----CTTCCATA
i caeSp111.Scaffold626  I 16 I 3
s caeJap4.Scaffold18194   730219 52 +   823664 atttaatttgtttttctaaaatt----ga--aattaaaaactgTGTCGTACTTTTTAT
i caeJap4.Scaffold18194 C 0 I 2
e caePb3.Scfld02_0       3815908 889 +  4147112 I

a score=-16156.000000
s ce10.chrX              5545539  88 + 17718866 ACGTGTATTGATTTTTCTTAAATGCTGTTTTTATTTCAAATTAAAGTTTTTGTGTTTA-----------------------ATATTTTTTTA-------------------TATTTCGTTTAACCAAATA
s cb4.chrX              11377536  69 + 21540570 --------------------------actTTCAGATTGAA--CATAACTGTGCTTTCA---------------------------TTGTTTACGTGtataaat------ttatttatttttctttaaact
i cb4.chrX              I 5 I 2
s caeSp111.Scaffold626    135138  62 -  1189296 ACGTGtatctttttattc--------attctctgattaa---------ttgtttttc----------------------------ttgcttt-----------------------tcttctcaataaaTA
i caeSp111.Scaffold626  I 3 I 53
s caePb3.Scfld02_0       3816797  92 +  4147112 ACGTGTATCCATATTCtcacaaaa--attctcaattcaa---taaatcttttttttca-----------------------acatttatttttgagaatgaa---------aacgtcttttcagt-aata
i caePb3.Scfld02_0      I 889 C 0
s caeJap4.Scaffold18194   730273 120 +   823664 ACGTGTATTTGTACTTCA--------TTCCTCAACCCTGatattattttctttatttatttaataaaaataaagatcaaaaataattatttt-gtgttaaaataGCTGCATATTTATGTTTACAT-AATG
i caeJap4.Scaffold18194 I 2 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-7191.000000
s ce10.chrX              5545627 42 + 17718866 ACTGTCAAAACAACAACA------------------------TCAATATCAAGGAACTCTGAAAGA
s cb4.chrX              11377607 53 + 21540570 tttttcaaaaataaagtaAGAAATGTCTTGAG-------TAGCTAGTTTGA------TTTAAACGA
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       3816889 27 +  4147112 --------aatcaCAAT-------------------------CCAATTCCG------TTAAATTGA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18194   730393 42 +   823664 ------------------GTTTTcgtcttaatttttttcttgtcataATCA------CTTAAAAGA
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    135200 53 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=151770.000000
s ce10.chrX              5545669 463 + 17718866 TTCCATATCGTGACACAGCGGGCAGCAATTGTACTTAGGTATTTCATGTTGATGAGCACGATGCTTACATCTTGGACACAGCCAGAAAATATTGTCCAGGATTAATCTTCCAGATGCAATGCACACGGGAAACTGAATA-------CGTTTTTTAATGAACAAGTTCAAGCTCATTTTT--AAAGTTACCTTTGTTTGACATTCGCTGCACTGTAAGTCATACGGATCGATCTTAGCATCACATACGGAGCAAGCTACTTTAGCCGAGTTGGGGTTCACTGGAGGATTTCTAAATGTA-----TATATAATTACCAAACT----CATTT---ATCTAA-----------CTAACTCTGAGAACAATCGAAACGACAAGTTTCTCATCTCCTCTTTTTCAGCATCGTCAAACTCCTCAAACGCTTCCAAGCGCATCATTGCTTTGGAACAAATTCCGAATTGATTGACATTTGCTGCTGCGAGAGCTAAA---AATTTA
s cb4.chrX              11377660 463 + 21540570 TTCGGTATCATGACACAACGGACAGTAGCTGTATTTCATTATTTCGTGCTGGTGGGCGCGGTGTTTGCATCTTGGACATAGCCAGAAGACGTGATCCAGAATCAGTCTTCCTGAAGCGATGCAAACAGGGAACTAAAAA------TGTTGGTTTCATTATAATGCAAA-----AATATTACAA---TACCTTTGTATGGCAATCTGGACACTGTAAATCGTATGGGTCGATTCTTGCTTCACAAGCTGTGCAGGTAATTTTAGCGCCATTTGGATTCACTGGTGGATATCTGAATATTTTCATTGCATCCCACCAAATTT----CACTTCCAATTTGT-----------CTTACTCTGAGAATAATCTAAAAGATAAATTCTGCATTTCTGTCCTCTCTTCCTCATCGAACTCTTCAAATGCCTCCAGACGCATCATAGCTTTTGAACAAATTCCAAACTGGTGAACGTTGGCAGCAGCCAATGCTAAA---ATA---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    135253 465 -  1189296 CTCCGCCTCATGGCAGAGAGGACAATAAGTGAACTTCGATATTTCATGTTGATGGGCAATGTGCTTGCATCTTTGACACTGCCAGAAAACATTGCCCAGGATTAATCGCCCTGAAGCGATGCACACCGggaactgaaaa--tatgtttttgttcaattataaaattaa-----aagacT--AA---TACCTTTGTGTTACATTCTCTGCACTGTAAATCATATGGATCGATTTTAGCATCACAAGCAACACAATCAATTTGTGAGTTGGAAGGATTGACAGGGGGAAATCTGTAAA-------AGCATTAGTCAAGAATT----CATTTGAGTTTTAT----------ACATACTGAGAAAATAGTTCAAATGAGagatctttcatttcttctctctctgcTTCATCCAAAGTGTCTAGCACTTCCAACCTCATCATTGCTCTGGAACATATTCCAAACTGACCAACGTTTGCGGCGGCCAATGCTAAAAGGAAAtcc
i caeSp111.Scaffold626  I 53 I 3
s caePb3.Scfld02_0       3816922 463 +  4147112 TTCTGCCTCATGACAGAGTGGGCAAAAATTGTACTTCGATATTTCATGTGGATGGGCGATCCTCTTACATCTTTGACACTGCCAGAAAATATTGCCGAGGATTAATCTTCCGGAGGCAATACAAACGGGAAACTGCAaa---atttcgtcattt--tttcggaatgag---tCAAGACA--AA--TTACCTTTGTATAGCACTCACGGCATTGTAAGTCAAATGGGTCTATTTGAGCATCACAAGCAATGCAAGGGATTTTCGAAGAACTGGGGTTGACTGGagggaatctgaaa----------------tttcggatg----tacttgaaaattgttcagagAAAATCATActgtgaaaaaatagaaaatgagagatctctcatttcttccctCTCGGCATCATCGAATTCTTCAAGCACTTCAAGGCGCATCATTGCTTTTGAACAAATTCCGAATTGACCAACATTGGCAGCAGccaaagctgaa---aaatca
i caePb3.Scfld02_0      I 6 I 28
s caeJap4.Scaffold18194   730435 472 +   823664 TTCCACGTCATGGCAAAGTGGGCAATATCTCCATTTGTGAATCTCATGCTGATGAGCACGATGCTTGCATCTTGGACATAACCAGAAGACGTTGTCAATTATCAGTCTTCCAGATGCAATGCACACaggaaactgcaaaaaaaaaattagaaatgaCCTTAAAACATA---TCAATTGT--AT--TTACCTTTGTATAACACTGATAACATTGCAAATCATATGGATCAATTTTAGTGGAGCACGACGGACAGTCAACTTTCGCAGCTTTTGGATTTACTGGAGGATTtctaaataaa-----caaataaccATTAAAATGCAACATGCGAAAAAATT-----------CTCACTCTGAAAACAATCGGAACGAGAGATCTCGCATCTCTTCTCTCTCAGATTCCTCGTAATCCTCGAGTGCTTCCAGGCGCATCATGGCTTTCGAGCAAATTCCAAATTGATTGACATTCGCGGCAGCTAATGCTGAA---AGACGA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-3521.000000
s ce10.chrX              5546132 24 + 17718866 TTTAAAACCTTAAAGAAATTACTC----------
s cb4.chrX              11378123 23 + 21540570 -CTTCAAACTTAAAAAGACGAAAG----------
i cb4.chrX              C 0 I 5
s caeSp111.Scaffold626    135721 17 -  1189296 ttttcaatttttttcat-----------------
i caeSp111.Scaffold626  I 3 C 0
s caeJap4.Scaffold18194   730907 33 +   823664 -CTCAAGTTTTACAGAAATATGTAGTATGTACAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3817385 28 +  4147112 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=43908.000000
s ce10.chrX              5546156 101 + 17718866 GTTGT----------TACCGATCATAGAGTGAACTTCCGCCGGATCAAGAAATTCTTCGTAATCAGATAAAATCAGGGAAGTTTGAAGAGCATCTTTGATTCTGTCTGAAA
s cb4.chrX              11378151 101 + 21540570 AAACT----------CACCGATCATTGAATAAACTTCAGCGGGGTCAAGAAATTCTTCATAGTCGGATAGTATGACAGATGTCTGAAGTGCATCCTCAATTCGGTCTGAAA
i cb4.chrX              I 5 I 35
s caeSp111.Scaffold626    135738 101 -  1189296 ---atc-------cCCACCAATCATTTTATAAATCTCAGCGGGATCAAGATATTCCTCATAGTCTGAAAGAATAACGCATGTTTGAAGTGCATCTTCAATACGATCTGTAA
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3817413 101 +  4147112 GAAAT----------TACCGATCATTTTATGAATCTCCGCTGGATCAAGATATTCCTCATAGTCAGAAAGAATTATCGAAGTTTGTAGAGCATCTTCAATACGacctgaaa
i caePb3.Scfld02_0      I 28 I 11
s caeJap4.Scaffold18194   730940 106 +   823664 -----TTTATTGACAAACCTATCATGGAATAAATTTCAGCAGGATCTAGATATTCTTCATAGTCAGAGAGGACCACGGCAGTTTGAAGAGCGTCTTCTATGCGATCTTCAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-239.000000
s ce10.chrX              5546257 2 + 17718866 CA
s caePb3.Scfld02_0       3817525 2 +  4147112 ag
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18194   731046 2 +   823664 TA
i caeJap4.Scaffold18194 C 0 I 28
e cb4.chrX              11378252 35 + 21540570 I
e caeSp111.Scaffold626    135839 4 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=979.000000
s ce10.chrX              5546259 12 + 17718866 TTATTTGAAATA
s caePb3.Scfld02_0       3817527 12 +  4147112 TTATCTGAAATA
i caePb3.Scfld02_0      C 0 I 20
e caeJap4.Scaffold18194   731048 28 +   823664 I
e cb4.chrX              11378252 35 + 21540570 I
e caeSp111.Scaffold626    135839  4 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5546271 421 + 17718866 AAATTTTATGGGAGTGTTTCATAATTCGAATGCCCTTTTTCTCTTACCCATAAGTGCGTTCCAATTGTTGATAGACAATTAAATATTAGGCAGATTCGGAAATTTTTGGCAAAGATTTGAAAACACCGACAGAGTAAAATTTCAAAAACGGTATTTTGGTAATAAAAACAATACGCGGTAAACAGAAATCTTGGAATATAATCGATAATTTTTAAAATTTTCAAAGTACAGTCAAGTTCAGAAACAAGCAAATGCCAAAATTGTCGTTTTCAAAAAAAAATCAAACTATTATACAAATAGACACGTAAATTGCGATTTTTGAAAATAACTACAAATGTTCGTATCAAATTTAATTAGAAAGATTTACTTATTACTTATGATTCGATTTCAAAAAACATTTCCCTACTTTCAAACCGTGTCA
e caePb3.Scfld02_0       3817539  20 +  4147112 I
e caeJap4.Scaffold18194   731048  28 +   823664 I
e cb4.chrX              11378252  35 + 21540570 I
e caeSp111.Scaffold626    135839   4 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=726.000000
s ce10.chrX              5546692 23 + 17718866 CAGTATTATCTTTAAATCTAAAA
s caeSp111.Scaffold626    135843 23 -  1189296 CGATGCTAATTTTAATTGTGAAA
i caeSp111.Scaffold626  I 4 C 0
e caePb3.Scfld02_0       3817539 20 +  4147112 I
e caeJap4.Scaffold18194   731048 28 +   823664 I
e cb4.chrX              11378252 35 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-1992.000000
s ce10.chrX              5546715 4 + 17718866 ---CA--TT
s caeSp111.Scaffold626    135866 6 -  1189296 ---TAAATA
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   731076 4 +   823664 CAAT-----
i caeJap4.Scaffold18194 I 28 C 0
e caePb3.Scfld02_0       3817539 20 +  4147112 I
e cb4.chrX              11378252 35 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=1210.000000
s ce10.chrX              5546719 10 + 17718866 CTTACTCTCG
s cb4.chrX              11378287 10 + 21540570 CTaactatca
i cb4.chrX              I 35 C 0
s caeSp111.Scaffold626    135872 10 -  1189296 CAAACTTGTT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   731080 10 +   823664 CTAACCTTCA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3817539 20 +  4147112 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=298825.000000
s ce10.chrX              5546729 866 + 17718866  
s cb4.chrX              11378297 874 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    135882 846 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3817559 852 +  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18194   731090 892 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=2528.000000
s ce10.chrX              5547595 6 + 17718866 CTGAAA
s caeSp111.Scaffold626    136728 6 -  1189296 CTGAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818411 6 +  4147112 CTGTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   731982 6 +   823664 Ctgtaa
i caeJap4.Scaffold18194 C 0 I 75
e cb4.chrX              11379171 0 + 21540570 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-5910.000000
s ce10.chrX              5547601 98 + 17718866 ATATAGGATAAATGTATGCTTCTCAGCGTCCGACACTTTTTGGGTTGCGCGCCGCACGCCGGATAGCAGGCGTTTGCGTGGAAGCCatatttataatt
s caeSp111.Scaffold626    136734 17 -  1189296 --------------------CCTCTTTTTCCGgcatt-------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818417  7 +  4147112 ------------------------------TGCTATT-------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   731988 75 +   823664 I
e cb4.chrX              11379171  0 + 21540570 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-3637.000000
s ce10.chrX              5547699 25 + 17718866 tttaaaaaaattaGAAAGATATT---AC-
s caeSp111.Scaffold626    136751 21 -  1189296 ----caaaaactgaaaatgtctc---AC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818424 20 +  4147112 ----GAA----TTAAAACGTTTTTCGAT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732063 25 +   823664 -tgcagaaaattgagagagccgt---ggc
i caeJap4.Scaffold18194 I 75 C 0
e cb4.chrX              11379171  0 + 21540570 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-15388.000000
s ce10.chrX              5547724 158 + 17718866 CATTCCATCATTTCGTAGTGTGTTTCAGCCATGTTTCTGAATGCATCACATTTCCCTTCATCATCGTCATCA------------TTTCGAATCAAATCATATACAGATGCGTAATCACCAACCTTTTTGTACATTTCAACAGCTAGGTCTCTGAA----ATTTCAACTTTATAA
s cb4.chrX              11379171 164 + 21540570 CATTCCATATTTTCGTAGTTATGTCGTCCGATCTCTTTGTACACTTCATGCTGCAACTCCTC------GTCAACAGTCTCATCGTGTCTTATCATCTCATAAATTGCGTTATAGTCCCCAAGTTTGCGATACATTTCGATGGCCAAGTCTCTGAA----ATGACACTATTTTAA
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold626    136772 142 -  1189296 CAATCCATATTTTCATAATGGAATTCAGCCATTTCCTTGAATGCCTCCTTTTTCCGCTCCTCATCTGGATCA------------TTCTTCACTAACTCATAAACTGCTCGATGGTCTCCAACTTTTTCGTACATTTCAATCGCCAAATCTCTGT--------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818444  86 +  4147112 TAATCAAGA-----ACAATAA----------------------------------------CATATgggtcaaaaatgtt----tttctcaccaA------------------GGATCCAAC-------------TCAAGATCCAAATCActgca----agaaaaa----ataa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732088  99 +   823664 ---------------cgatgtttttctctgatttctctaaac--------------------------ctca------------cttcaaatgca--------------------tgtgaaattttttgttcgtttgga--gcgagttatcagcgttttataccgagtatataa
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-20447.000000
s ce10.chrX              5547882 214 + 17718866 ATTTAAAGTTTCAATTTTTAGTAATCATTCAGTATTCAACTATTTTA-AATTTGGAAAACTA--AATATCAATATA--CATTTGGAGTCCTGAAAGGATCCACACTCAAAACCTTTCAGTACTTCATTAGACGAGTAACTGATTTCGTGGTccgacatctactgggttccgcacggcactatatttaccttactgagggcgtggATCGTTACTGCAAAG
s caeSp111.Scaffold626    136914  57 -  1189296 -----AAA---CAGTT--------------------------------------------------------------CGTTTGGAATTTT------------------ATTCTA-CATATCTT-----------------------------------------------------ATTACTTCCGGTC--------------------ACTGTGAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818530 125 +  4147112 ttttaaaa---tagTT-------------------TCAACCAC---------------------ATTACCAATCCAGATTCTCGTAATAGT------------------ATTCTGCCATATTTTCATAGGatgccttctttttctccttgtCCGG----------------------ATCATTTTTGACCAGCTCATAG-----------ACTGCAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732187 140 +   823664 ggATTGAATTGGAGTT-------------------TTTACcccaaaacaacaacaaaaaatattaatacCAATCAAGCTGCTCATAATGAT------------------AATCAGCCAAGTGACGATAGGCATCCGATTGTGCATCTTTGTCatc----------------------ttcatttttaata--------------------atttcaaAG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11379335  19 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-4398.000000
s ce10.chrX              5548096 121 + 17718866 ---------TGAACATTGTGCGACGCTGAGTTAGTAAGTAGGGACCGTTTAATTTTGAGGTTTTCTTGACAAAGAACAACAAAGTTTTTTAGATTTTGGATTTTGTACATTCACGCTTT--------ATATGCATCGA
s caePb3.Scfld02_0       3818655  75 +  4147112 ---------TGATCACCAACCTTCTC---------------GTACATTTCAATT------------------------GCTAAGTCcctaaaaatccaaatgatG-------ATGCcct--------ccgaaaattcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732327  99 +   823664 ACCGAGTTGTAATCACAGATTTTCTG---------------ATACATTTCAATT------------------------AACAGATCCCTGGaagtaaaaatgttttccttttttttttttaatttaattttgcaTCGA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11379335  19 + 21540570 I
e caeSp111.Scaffold626    136971   0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=5130.000000
s ce10.chrX              5548217 26 + 17718866 --TTGACTTGCCGTCTATCAGCTTGCAA
s cb4.chrX              11379354 26 + 21540570 --TTAACTTACTTTCTATCACATTGCAT
i cb4.chrX              I 19 C 0
s caePb3.Scfld02_0       3818730 26 +  4147112 --aaaacttacTTCCGATCACAATGCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732426 28 +   823664 AAAAATCCTACTTTCTATCGCATTCCAG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    136971  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=223402.000000
s ce10.chrX              5548243 850 + 17718866  
s cb4.chrX              11379380 804 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    136971 801 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3818756 809 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   732454 836 +   823664  
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=2485.000000
s ce10.chrX              5549093 6 + 17718866 CTGAAA
s cb4.chrX              11380184 6 + 21540570 CTaaaa
i cb4.chrX              C 0 I 36
s caeSp111.Scaffold626    137772 6 -  1189296 Ctaaag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819565 6 +  4147112 ctgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733290 0 +   823664 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-43.000000
s ce10.chrX              5549099 16 + 17718866 ---GTTT-------TCT---TAGTGAAAA
s caeSp111.Scaffold626    137778 25 -  1189296 tg-atttttgatacTCT---CAATAAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819571 29 +  4147112 cacatttttgatcatttgcAAAATTAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733290  0 +   823664 C
e cb4.chrX              11380190 36 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-6248.000000
s ce10.chrX              5549115 446 + 17718866 AGATGGCAGAAAAAATTACCGCCCGAAATATTTAAAAAAAAGGAGTT-CCGATTTTTAATATTTTTCAATCATTTTCATTTTGTGGTTTACAAAATTTTTCAGGTTTCTTTCTAAGTAAGTAGGGAAACCAGTTTTACATTTTCAGTGAATTTCTACTTTTCAGATTAAAAATCAATTTAGCCGCCTTGACACAGAAAAGTTTGTCGAAATTTCAGATTATAGGTAAAAGTTATTTTTCAAAACTTGAACTTTTTTTAAAATCTTGTCATAAAGTGTTGGGAAATTTTGAATTCAAAATTTGAAATTTAAGAGCGAACTTTCAGTAAAAGTGAATAAGTCAAAATTAATTATTAATATAAGTCAAAATTTAGACAATTTTTAAGTTTCGTCGGACAAAATGTGCAAAATCACTACTGGCACTACACTATTTTCAATTTTTATTTAAC
s caePb3.Scfld02_0       3819600 183 +  4147112 AGGTG--------AATTACCA----------TGAGGAAAAACGTGTCGCCGA----------------------TGCATGTTGCG---------------CAGAT-----------------------------------------GGAGTCTTTGGATCCCAACTGAAAA------------------ACACAGAAAC-----TATAAACTtcag-----------------------------------ttttggaaagttttaTGATACGAT-----------------------------------aaacatatttttggaaa-------------------aactataGAGGTGTGTCAAATTGC----------------------GGTAAAATATAC----------------CCACA------------------TAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733290   0 +   823664 C
e cb4.chrX              11380190  36 + 21540570 I
e caeSp111.Scaffold626    137803   0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=136.000000
s ce10.chrX              5549561 2 + 17718866 AA
s caeSp111.Scaffold626    137803 2 -  1189296 AC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819783 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733290 0 +   823664 C
e cb4.chrX              11380190 36 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=1992.000000
s ce10.chrX              5549563 6 + 17718866 ACTTAC
s cb4.chrX              11380226 6 + 21540570 ATTCAC
i cb4.chrX              I 36 C 0
s caeSp111.Scaffold626    137805 6 -  1189296 ACTTAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819785 6 +  4147112 AATCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733290 0 +   823664 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=29514.000000
s ce10.chrX              5549569 167 + 17718866 CATCATAAAGAAAGTATCACCAATGCAAAGAGCACAAATTTCATCCTT---GCTCCCAAGCTGAA----AAAATCAGTTTTTGTGTTCAATTTGTTAAAAATTGGATGAA----------CTCACTAAACGTTTAGTGCCATACTCAATTGTTCTTTGTTGTTCTTCCAAAACGTAATCACCTA
s cb4.chrX              11380232 158 + 21540570 CATCAAAAAGAACGTGTCGCCAATACAAATTGCACAAATCGTATCACT---GCTACCCAACTGAA----gaaataagttttttga-----------aaatacaaattgATTTTACGA---CCTACCAAACGTTTAGTTCCATACTCAATTGCTCTTTGTTGTTCTTCAAGAAGATACTC-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    137811 156 -  1189296 CATGAGGAAAAATGTGTCACCGATGCATATTGCACAAATACTGTCTTT---GCCTCCCAACTGAA-----ATTTACTATTC---------------ACAGATTAATTCAATTCACCATTTCTTACCAATCGTTTTGTTCCAAATTCAATGCCCCTCTGTTGTTCTTCTAGAATATATTC-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819791  95 +  4147112 CATT-----TAATGTgt------------------------------------------gctgaa-----aaataagtttt---------------aa----------------------cTCACCAATCTTTTCGTGCCGTATTCAATTGTCCGTTGTTGTTCTTCCAAAACGTACTCTCCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   733290 179 +   823664 CATGAGAAAGAACGTGTCGCCAATACAAATGGCACAAATTTCATCCTTTGAACCAcctatctgaaaaaaaaaatcagtttacACGGGTCGAATGACATGTACAAAATGATAAAAA-----CCGACCAAACGCTTCGTTCCATATTCAATAGTTCGTTGTTGCTCTTCGAGCAGATATTCTCCTA
i caeJap4.Scaffold18194 C 0 I 1160
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-1715.000000
s ce10.chrX              5549736 41 + 17718866 TAAGAATACTGATAATATTATATGTTACCGTTTTTCGCAAA
s cb4.chrX              11380390 26 + 21540570 ---------GGCTGAAAACACAT------ATTTGACAGTGA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3819886 30 +  4147112 TA-----ATTGCTCACATTTCAT------TATTTCCATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   733469 1160 +   823664 I
e caeSp111.Scaffold626    137967  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=108524.000000
s ce10.chrX              5549777 202 + 17718866 T-----------------ACCAGATTTTCCAGGGACATGAATTCCTGCTTGCACGGAGTTAAACTTTGGAAGTACAAAATGCCAGATAAAATATCTATCCTCAGAAGCAATCACCGCACAAATTCCATTAACACATGCAAACTTTGGACGAACCGTTGTCACGTTGTAGTCTAGTGATGTTCCGATGCTATTACAGAGTTGACAGAAGTACTGAAACAT
s cb4.chrX              11380416 219 + 21540570 TAGTTTTTTACTTAGCTTACCAGATTTTCCTGGAATATGAATTCCAGCCTGAACCGTGTTGGTTTTTGGAAGTACAAAATGCCAAATGAAGTAACGATCCTCGCAGGCAATCACTGCACACATTCCGTTGACACATACAAACATCGGCTTCACAGTTGTTACACTGTAGTCTAGTGAAGTGCCAATGTTGTTGCAGAGTTGACAGAAGtactaaaaaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    137967 198 -  1189296 ------------------ACCTGATTTTCCAGGAACATGAATTCCTGCTTGCACTGAGTTAGTTCTGGGTAGAACAAAATGCCAAATAAAGTATCGGTCTTCACAAGCAACCACTGCACACATTCCATTAACACATACAAACTTTGGCCGAACAGTTGTCATATTGTAGTCCAGAGATGTACCAATGTTGTTGCACAGTTGACAGAAATACTTGAA---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3819916 209 +  4147112 TAATTATTG-------CTACCAGATTTTCCAGGCACATGGATTCCAGCTTGCACAGAATTAGTTCTCGGTAGAACAAAGTGCCATATGAAATATCGATCTTCACTAGCGATCACCGCACACATTCCATTTACGCAGACAAATTTTGGCTTCACATTAGTCATATTATAGTCCAGTGAAGTACCAATACTGTTGCATAGTTGACAGAAGTACTTGAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   734629 202 +   823664 -----------------TACCTGATTTTCCAGGAACATGAATTCCCGCTTGAACCGAATtaaattttggcaaaacaAAATGCCAAATAAAATATTGATCTTTGCTAGCAATCACTGCTGCCATCCCATTTACGCAGGAAAACAAAGGACGTACAGTTGTAGTGTTGTAATCGAGAGAAGTTCCAATATTGTTGCAGAGTTGGCAGAAATACTGAAATAT
i caeJap4.Scaffold18194 I 1160 I 64
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-12751.000000
s ce10.chrX              5549979 130 + 17718866 AATTTACATTTTGCCTCGGAATTGTGTAGCAAGTGTAGATGGTGTATAACCTAATTCCCCATATGGAAAACTTTCTAAATCAGCTATCAGCATCCCGTCACTTGCTTGGTACTTACATGTGGTATGACTC
s cb4.chrX              11380635  48 + 21540570 a--------------------------------------------aaatcatggTGTTCCAA--------------CAAATAA------------------------AAAGTGTACCGTTGGTATTCCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    138165  51 -  1189296 ---------------------------------------------acaacatattttttgaa-----------tataaaacaAG-----------------------GAAACTCACTTGGATTGTGCCAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3820125  55 +  4147112 -----------------------------------------------aactgagttttcaga--------------aaaacagat-CCAAC-------------TCTACAACATACCTGAACCGCTCCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   734831  64 +   823664 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=68113.000000
s ce10.chrX              5550109 238 + 17718866 CGTCATCCTGTCGATTTATCAAAACACAATGTTCCCGATAAAAGGCCATATTTTCGAAATGAGTCACAGTTTTGACAGTTTTTTCATCAGTCTG---TGAAATTCTTA--------AAATTTTGTATGCAAATCAAGTTTTTGATTACCTTGTAGTCATAAAACATTATGCCGTATTGGTAGAGCTCCTCTTTTTGGTAAACGTAGACTATTGTTTCTTCAATTGATCCCCACTGTGAA----------AAAAGGACTT-
s cb4.chrX              11380683 248 + 21540570 GTTCCTCCTGACGATTGATTAAAACACAGTGGTCTTTGAAGAATGCCATATGCTCGAAATAGGTGAGAGTTTTGATAGTTCTTTCATCAATCTG-Tatacaaa----attttaagaatgcATATTACTCCAATAACTATC----TTACTGCGTAATCATAGAACATGATTCCATACTGATACAACTCTTCCTTTTGATATGCGTAGACAATCGTCTCTTCCATTGCGCCCCAC--TGAATTATTCGTTTATATAATTTC-
i cb4.chrX              C 0 I 23
s caeSp111.Scaffold626    138216 239 -  1189296 CATCATCTTGTCGATTGATAATTATACAATGTTCTTTGAATGATGCtaagttttcgaaatagCTTACAGTcttgatagttttttcatcgatctt-aataaatttttcacttcaaa-aaaactatttcaccATTTGC--TT----TTACCTTGTAATCATAAAACATTATGCCGTATTGatattgttcttctttttggtaAGCATATACAATAGTGTCTTCGATAGCACCCCAC--TGAA----------ACACAAACTT-
i caeSp111.Scaffold626  C 0 I 26
s caePb3.Scfld02_0       3820180 237 +  4147112 CTTCATCTTGACGATTTATGATGATACAATGCTCCTTGTATGAGGCCATGTTCTCAAAGTATGTCACTGCTTTGATAGTCTTTTCGTCTGTCTGAAACACATATTTTGTTATAAATACAGCGCTTTTACAGATAAA--------TTACCTTGAAATCGTAGAACATGAGTCCATATTGGTACGGATCCTCTTTCTGATACGCGTAAATAATGGTATCTTCTATCGCACCCCAC--TGAA------------ATAAACTT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   734895 241 +   823664 CGTCAGTCTGACTGCTCACGATAAGACAATGTTCTCTGTAGAACGCCATGTTTTCGAAGTTTACAACAATTTTTATGGTTTTCTCATCTGTCTG-AAAGAATTTTCGGTTTTGGCTAAAGATTTTCCATGTCTC----------ATACTTTATAATCGAAGAACATGACACCATAGTGATAAAGCTCATCCTTTTGATAAACATATACAATGGTGCCATCCATTGAACCCCAC--TATA------ATGAAAATAGTATTG
i caeJap4.Scaffold18194 I 64 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-4776.000000
s ce10.chrX              5550347 23 + 17718866 -------ATGAAAATATATTATGA--ATGTCA---
s cb4.chrX              11380954 24 + 21540570 --------ATAAATTTCAGTATGACGTTtgta---
i cb4.chrX              I 23 I 29
s caePb3.Scfld02_0       3820417 18 +  4147112 --------AAAACatatagt------ttttta---
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18194   735136 29 +   823664 TTAGTTTCAGATGTAATAGT------TATGTAGCT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    138455 26 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=96462.000000
s ce10.chrX              5550370 330 + 17718866 TACCTTAAACTCTGGGCGAATTTGTCCAATGAGAAGAGTTCCGGCAGCTGCAATCGCCATTCGAAGACCTGTTGACTCCCAACAAATTCCTGTTATACAAGA---GTCGTTTGTTTGAAAATATCCAACGATCTAAA----AA-----------ACCAATTTTG-----TGTGCACACGGCAAAACTATAAAAA-TTCT-----TACATGTCCGTAAGCAGATAGAAAATGAATTTTTGAAAAAGTTGGTTCGTCCTTGTCTGAATCATTTCCACAGACTGCTAAAAAAGCTCCATTGGGCGACCATTTGGCTCCAGTGATTTTGAAATTCGGAATAGAAACAACGACTGGTTCTGAAA
s cb4.chrX              11381007 328 + 21540570 TACCTTAAACTCTGGTCGAATATGACCGATGAATAGATTCCCATCAGCAGCAATTGACATTCTGAGGCCAGTAGACTCCCAGGAGATTCCAGTGATTCTAGT---TTCAAAGTGTTGGAAAAATCCaactttctaaa----aaaatcaaattaaaaCAATTATA----ATCTGAAAGTGT---------------CTGT-----TACATGTCCATAAGCAGATAAGAAGTGAATATTCGAATGACGTGGATCGTCTTTATCAGCTTCAGACCCACAAATTGCAATGAACGCTCCGTTGGGTGACCATTTAGCGCCAGTGATGCGCACGTTTGTGAGACGAACAACGATCGGCTCTAAAA
i cb4.chrX              I 29 C 0
s caeSp111.Scaffold626    138481 328 -  1189296 CACCTTAAATTCCGGTCTGACATGACCAATGAATAGATTTCCGTCAGCAGCAATAGCCATTCTCAGTCCGCTTGCTTCCCAACAAATTCCAGTTATACGAGT---TTCAAAATGCTGGAAGAAGCCGACaacctgaa----aa----------taaagattaTTGGGTGTCTGAAACTGC--------TAAAGG-CACC-----CACCTGTCCATATGCTGAAATAAAGTGTACACTTGAATGTCGTGGATCTTCTGTGTTTAAATCATGTCCACTGATTGCAATGAATGCTCCGTTCGGTGACCACTTAGCTCCAGttatttttaggtttttgaGACGGACTACGACGGGTTCTGCAA
i caeSp111.Scaffold626  I 26 I 56
s caePb3.Scfld02_0       3820445 329 +  4147112 tactcTGAATTCAGGTCTGACATGTCCAATGAACAAATTTCCATCAGCTGCGATTGCCATTCTGAGCCCACTGGCTTCCCAACAAATGCCAGtaattcttgt---ttcaaaatgctggaaaaaacCGATAACCTGAA----AA-----------AGTAATTATT-----TCTGAGAACAC-------ATAAAGGTCATCGTTTTCACCTGTCCGTAGGCTGACAGAAAGTGTACACTAGAATGTCTTGGATCCTCAGTATCCAATGCAGTGCCACTGATCGCGATGAAGGCACCGTTTGGTGACCACTTTGCGCCAGTGATCTTGAGATTTGGGAGACGAACAACGACAGGCTCTGAAA
i caePb3.Scfld02_0      I 10 I 18
s caeJap4.Scaffold18194   735165 329 +   823664 CACTTTAAACTCCGGACGCATAGTTCCGATAAGTAAATTTCCATCGGCAGATATAGTCATTCTAAGCCCAGAAGCCTCCCAACAGACACTAGAAATCTTAGTGTATTCGTTCATCCGAAAATAGCCAATAATCTAAATGTCAA-----------TAGGATTAGC-----AATGCATAATT--------TATAAG-AGTT-----AACCTGTCCATAAGCtgtaattaaataaattgCTGCTTGACCGTTTTCATCATTTGTTAAATCTTGTCCACAAACCGCAGCAAATGCGCCATTTGGCGTCCATTTTGCACAATTGATGACAAAGTTTGGAATTCTTACCACTACGGGGTCTAAAA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=874.000000
s ce10.chrX              5550700 7 + 17718866 ATGCAAA
s caePb3.Scfld02_0       3820792 7 +  4147112 ATTCAGA
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold18194   735494 7 +   823664 AGTCAAA
i caeJap4.Scaffold18194 C 0 I 31
e cb4.chrX              11381335 0 + 21540570 C
e caeSp111.Scaffold626    138809 56 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-19450.000000
s ce10.chrX              5550707 406 + 17718866 AATGTATGAAAGGGAGTTTCA--ATGTTTATAATTATTGA-AATTACA-TGTTTTGATTTTTTTTTAGT-AAAACTTTCCAGGAAAATTAAATGAAGAAGCAGTTAAGTCTCAAAAAtttcaaacgtgtcagccaaattgaaacctatgatattttcaaattaggcaagtattttccttctttctgacattacttgtcaagaataaaacttggaatgccatgatgcaataggta--atttttgtacaatttcATAACTTAAGTCACCTCTGATTTCTAGTGTTGTCCAGTGTTTTTAATTGAATTAGTATACTAATATATAGCTATTTTTCAATAGTGCACTTAAATTTAACTTTTGACCCTTTCGTCAAATTTCAAAATTTAAAATTGTTGACCTGTCTAAAACTCAAC----GAC
s cb4.chrX              11381335 242 + 21540570 ATCAAGCATAGAGCAGGTGcgttaaatttttaaatgctAATAGTAACATAGCAACGTTTTTTCTAGAGAGAGAGTTGAGCAGAACAGCTCATCG------------------CCACTATACAAAAACATTG---------------AAgcccttttttaat----------tttgtctTTTCAACG-TTTTA----------------------------------GAAAGCTAGCCTCGTCAGATCCGTTAAAAACA----------------------------------CTTTGGCTACATTAG-----ATTTAGATAg------ttcaaaa------------------------------------------------taaatatgaaaCTACATAAAAGTAAGAA---GA-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3820799 237 +  4147112 GCCATACGtggaaga--------aaattgttttcggataa---------agaaatgaattctT-------AAAGATTATCATGA-AGCCctttg------------------agaaatttcgaatttgtta---------------atatggtttttta-------------ttttcatttcactg-CTTTATTTGTGCACAA----------------------CAAAggatg--tttttcgaaaacatcgAAAACA------------------------------------TTATCTATATTTG-----TAACGTGTGG------TTCAAAACTGTAGTT------------------------------------TTCTTTGTTATCAAGCTGTCAAGAAATAGGTGCTTGA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   735501  31 +   823664 I
e caeSp111.Scaffold626    138809  56 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=222136.000000
s ce10.chrX              5551113 742 + 17718866  
s cb4.chrX              11381577 730 + 21540570  
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    138865 719 -  1189296  
i caeSp111.Scaffold626  I 56 C 0
s caePb3.Scfld02_0       3821036 735 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   735532 730 +   823664  
i caeJap4.Scaffold18194 I 31 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5551855 60 + 17718866 TTTATGTTAATGGAATATACTATTAATACCCAGACAttacacagtactgtaatttcaaaa
e caePb3.Scfld02_0       3821771  0 +  4147112 C
e caeJap4.Scaffold18194   736262  0 +   823664 C
e cb4.chrX              11382307  0 + 21540570 C
e caeSp111.Scaffold626    139584  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-2160.000000
s ce10.chrX              5551915 34 + 17718866 tcttgtcgctgcggagtttttattgaATGTTTAT--
s cb4.chrX              11382307  9 + 21540570 ---------------------------ttctCATTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    139584  6 -  1189296 ----------------------------gtttat--
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3821771  0 +  4147112 C
e caeJap4.Scaffold18194   736262  0 +   823664 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5551949 21 + 17718866 AGTTTCTTTTGCGATTTGTTG
e caePb3.Scfld02_0       3821771  0 +  4147112 C
e caeJap4.Scaffold18194   736262  0 +   823664 C
e cb4.chrX              11382316  0 + 21540570 C
e caeSp111.Scaffold626    139590  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=751.000000
s ce10.chrX              5551970 14 + 17718866 AATTTTATGTTGTT
s caeJap4.Scaffold18194   736262 14 +   823664 aatgttgaGTTGTT
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3821771  0 +  4147112 C
e cb4.chrX              11382316  0 + 21540570 C
e caeSp111.Scaffold626    139590  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-359.000000
s ce10.chrX              5551984 76 + 17718866 GCATTGTTATATTTTATCAAACTGCTTAAAAAATATACCAAAAACTATGGGAAATCGTTTAaaaagtttgaagtta
s cb4.chrX              11382316 28 + 21540570 -------------TTATCAAACGTTTTAACAA-----------------------------------TTGGAGCCA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3821771  0 +  4147112 C
e caeJap4.Scaffold18194   736276  0 +   823664 C
e caeSp111.Scaffold626    139590  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5552060 8 + 17718866 attgcctt
e caePb3.Scfld02_0       3821771 0 +  4147112 C
e caeJap4.Scaffold18194   736276 0 +   823664 C
e cb4.chrX              11382344 0 + 21540570 C
e caeSp111.Scaffold626    139590 0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-24.000000
s ce10.chrX              5552068 16 + 17718866 ttaaagacgtatactc
s caePb3.Scfld02_0       3821771  7 +  4147112 ttaaaga---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   736276  0 +   823664 C
e cb4.chrX              11382344  0 + 21540570 C
e caeSp111.Scaffold626    139590  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-1826.000000
s ce10.chrX              5552084 56 + 17718866 tttttgcaattaacaaaatgtgaaaaacaaaaacttgtcgcgtcgagaccaggtcc
s caeSp111.Scaffold626    139590 24 -  1189296 tttttgagtttaacaa----tgaaaaaa----------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3821778 10 +  4147112 --------------------taaaaaaaaa--------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   736276  0 +   823664 C
e cb4.chrX              11382344  0 + 21540570 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-553.000000
s ce10.chrX              5552140 27 + 17718866 cacatgtttg-ttgaaaaatcATATGTT
s caePb3.Scfld02_0       3821788 17 +  4147112 -----------tcgaaactttaTATTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   736276 26 +   823664 CATAAGTCtgataaataatttatttt--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11382344  0 + 21540570 C
e caeSp111.Scaffold626    139614  0 -  1189296 C
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=77571.000000
s ce10.chrX              5552167 139 + 17718866 ACCTATTATTAATCATTTCCTCACACCATTGTTCGTTGAACATTCCCCATACAATAATTAATCCAGACGTGTCGCTCGTTGTCAGTTTTTGATTATTTTCATTCCACGTAGCATTCATCACAGTTGCTGCAAATATTAA-------
s cb4.chrX              11382344 138 + 21540570 ACCTATTATTGATCATTTCCTCGACCCATTGCTCATTGAACAATCCCCAAACGATTATAAGACCAGAGGTGTCGCTCGTGGTCAGTTTTTGGTTGTTCTCGTTCCATGTCGCATTCATGACAGTAGCTGAGAA-AAAGA-------
i cb4.chrX              C 0 I 31
s caeSp111.Scaffold626    139614 138 -  1189296 acctattATTAATCATTTCCTCAGCCCATTGATCGTTAAACAGTCCCCAAACAATAATCAGACCAGAAGTATCACTGGTCGtcagtttttgattgttCTCATTCCATGTTGCATTTAGAACGGTTGCTGcaac-aataa-------
i caeSp111.Scaffold626  C 0 I 27
s caePb3.Scfld02_0       3821805 134 +  4147112 ACCTGTTGTTAATCATTTCCTCGGCCCATTGGTCATTGAAAAGACCCCAAACAATAATGAGACCGGAAGTGTCACTAgttgtcaatttttggttgTTCTCGTTCCACGTAGCGTTAATCACAGTTGCTG-----AATAT-------
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   736302 145 +   823664 accTGTTGTTAATCATTTCTTCAAACCACAGGTCATTGAAAAAGCCCCAAACAATAATCAAACCGGTAGTATCACTTGTGGTCAATTTTTGATTGTTCTCATTCCAAGTAGCATTTAAGACagtggctgaaaa-aaaaaacaataa
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-3119.000000
s ce10.chrX              5552306 31 + 17718866 ATTGTTGTTAAATTAAATTACAAAGTTTCAG----
s cb4.chrX              11382513 22 + 21540570 acttttgtctAACT---------AGTTTACG----
i cb4.chrX              I 31 I 29
s caePb3.Scfld02_0       3821944 19 +  4147112 ---gttatgaaaat---------tgtttcag----
i caePb3.Scfld02_0      I 5 I 7
s caeJap4.Scaffold18194   736447 29 +   823664 ------atgaaacatgtacataaaattaaaaatga
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    139752 27 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=87555.000000
s ce10.chrX              5552337 351 + 17718866 TTACCATTATGCCCCTCCAAAGCTTGGTTCACCACAAGAGTT------GCAGCATTTGGGGATTTATTCAAATCAGTGGCA---TCCGTTCCTATCTTGACGACTTTCAGCTTGCCTAGTGCACCACCGCATGCAATATAATTACTGTTGTAGTTCCACTCGGCAAAATGGAGCTGTCCGTGTTCGGGAAGTCCCAAATTGAACTAAAGTTTTCAGT---GAAATCATAAGTTT-TTTAAAATTGAAGA--------ATTAA--TTTACCTTTCGGAACACGGACATTGTCAATTTTCCAATTGTTTTCTCATTGTAATTTGCCATAACATTCAA---CATCGGCGGCATATTGTTCGATAAAAA--GTAATCACAACA-------------------
s cb4.chrX              11382564 336 + 21540570 TTACCTTGATGCCCTTCCAAGGTCTGATTGACGTTCAACACAGTGTTGCTAGGATGCTGT------TTTGGTTCCGTGGCG---TCTAAACTTATTTTGACGACTCTCAATGTGCCCAATGCCCCTCCACACGCAATATAATTACTGTTGTGATTCCATTCCGAAAAATGAAGTTGTGCGTTTTCGGGAAGACCCATATTgaactgaa--------------aagaaaacaatt-ttgaaaaaagcagaTG------AATAAAACATACCTTCCGAAAAACACACATGTACAATTTGGATATCGTCTTTTCATTATAGTTTGCCATTGCATTCAGAAGCA------GAGTCATTTTTAAC-------CGACAGAAAACC-------------------
i cb4.chrX              I 29 I 4
s caeSp111.Scaffold626    139779 336 -  1189296 TTACCATTATGTCCCTCCAACGATTGATTAACGATGAGCGCA------CTGGCATTTGGT------TTTGGGTCCCTCACA---TCCATTCCGATTTTAACCACTTTCAGTGTTCCCAATGCACCGCCACAGGCAATGAAATTACTGTTATGATTCCATTCGGAAAAATGCAGTTGAGAATTTTCAGGCAATCCCATATTAAactaa-------------------atttaatt-ttttgatcgacaaaactc----acaaaaacttacttttcgAAATACACACATATACATTTTCGATATTGTCTTTTCGTTGAAATTAGCCATtgtattcaaaagaataggAGGAGCCATTTTTAgttaa----tgaagaaaaata-------------------
i caeSp111.Scaffold626  I 27 I 6
s caePb3.Scfld02_0       3821970 342 +  4147112 ttaCCATTATGCCCTTCCAAACTTTGATTAACAATGAGCGCA------CTCGCATTCGGC------TTTGGATCTCTCACA---TCCATTCCTATTTTCACAATCTTCAGAGTACCCAATGCTCCTCCACATGCAATAAAATTGCTGTTGTGATtccattcagaaaaatgaagttgagcATGCTCAGGTAACCCCATATTAAACTAAA-----------------CATATAATTATATAAATTGGCATTTCCCCGGTACAAA---TTACCTTTCGAAACACATTCATGTAAACTTTGGAACacgttttttcattaaaattcgCCATTGTGTTCAAAAGAACTGGGGgcgtcattttgaaaaaagc--ttagACAAAACA-------------------
i caePb3.Scfld02_0      I 7 I 1272
s caeJap4.Scaffold18194   736476 362 +   823664 gtACCATTATGCCCTTCTAGAACTTGATTCATGACAAGCGTA------------TTTGGT---TTGCTGGGATCAGAAGCAGGCTCTCCTCCAATTCTCACAACTCGCATACTTCCCTGCGCACCTCCAGTTGCAACAAAATTGCTGTTTAAATTCCACTCCGCAAAATGAAGAAGTCCATTTTCAGGAAGGCCCATGTTGAACTAAAATGTTACATCTCGACAAAACCAAATT-ATTTAACCG-------------ACAAA-ACTCACTTTCCGAAAAACCGTCATAGACAATCGGTCAATAGTTTTCTCATTATAGTTTGCCATTGAATTCAAATAAG------TcgccattttgagaaaaactatGCAGGCAAACAAGCCGCTATTACcacaaga
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-5379.000000
s ce10.chrX              5552688 46 + 17718866 ATATTTTAAAACGGCGACGGAAGACAAAGAATTGGAACGCAATTGC-------
s cb4.chrX              11382904 46 + 21540570 ACAGCCGATAAACAAAACAGAAAAGGAGATGTGTGGGTGGAAGAGC-------
i cb4.chrX              I 4 I 23
s caeSp111.Scaffold626    140121 37 -  1189296 AAATTCAAGGGTCGAATTTGAATAAGAAG---------GGAGAAAC-------
i caeSp111.Scaffold626  I 6 C 0
s caeJap4.Scaffold18194   736838 36 +   823664 aaatttta--------atggTAAATGAAC---------GTAAACCTCCACCAC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-197.000000
s ce10.chrX              5552734 21 + 17718866 TGACAGCCTCCTCTTTGGCAA
s caeSp111.Scaffold626    140158 17 -  1189296 TAGCAGCTGC----TCGGAAG
i caeSp111.Scaffold626  C 0 I 2
s caeJap4.Scaffold18194   736874 13 +   823664 ---CAGCGG-----TCAGCGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e cb4.chrX              11382950 23 + 21540570 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=8104.000000
s ce10.chrX              5552755 19 + 17718866 GCGTTATTGCCATGGCAAC
s cb4.chrX              11382973 19 + 21540570 GCGCTGTTGTCATAGTGAC
i cb4.chrX              I 23 C 0
s caeSp111.Scaffold626    140177 19 -  1189296 GCGTTGTTGTTATGGCAAC
i caeSp111.Scaffold626  I 2 C 0
s caeJap4.Scaffold18194   736887 19 +   823664 GCGTTGTTGTCATAGCAAC
i caeJap4.Scaffold18194 C 0 I 3912
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-1211.000000
s ce10.chrX              5552774 53 + 17718866 GCGCAGTTAACGACACTCA-------CGGCAAAAGAGATGTG-------GGACAGGTGCAGTGCACA
s cb4.chrX              11382992 62 + 21540570 GTGAGA-----GACATTCTTCGGAACAGATGAGAGAGAAGGCGGAAGAtggagaaatagagaaaaag
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    140196 62 -  1189296 TCCCAA-----GACGCCAAAGAAAGCCGGGAGAAGAGGGGAGGGCAGATGGACACATGCACTGCATA
i caeSp111.Scaffold626  C 0 I 599
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-951.000000
s ce10.chrX              5552827 712 + 17718866  
s cb4.chrX              11383054 645 + 21540570  
i cb4.chrX              C 0 I 174
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeSp111.Scaffold626    140258 599 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5553539 167 + 17718866 TGAGCCGGAAGTGTTATTTTCAATACTATTCAAAGAGTCCCGGCATATTTATGGAACTGATTAATTGAGTGCTTACAGCGTTACAATCTTAATTGTTTGGAAGAAAAATTCATACAACCACTATAAAATATTGCACAACAATAATTTCTTATTCCAACTACAAAAAT
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e cb4.chrX              11383699 174 + 21540570 I
e caeSp111.Scaffold626    140258 599 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=633.000000
s ce10.chrX              5553706 90 + 17718866 TATATTGTTCAAAAAATAAGGAGTT-------ACATTTTTGGATTTTCCAGATGTTTGAATAGTTGTTTTTCTATCT--AATTTCATTTTTCAGCAAAC
s cb4.chrX              11383873 98 + 21540570 CAtgctcttc-aaaattcaaaagttggcATAAACAGTTCTAAACTTCATAAATATCATTTTCGCTGAGATTTCATTTAAAACTTCACTAGTCAGTAGAA
i cb4.chrX              I 174 I 59
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeSp111.Scaffold626    140258 599 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=0.000000
s ce10.chrX              5553796 89 + 17718866 TTTAAAATAGCGTACTGCTTAAAAACCCGCTTACAAATAATGAATTTTCCCAGTGGAGGAGTGAACGATTTCATTTGGACGAAGAACTT
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e cb4.chrX              11383971 59 + 21540570 I
e caeSp111.Scaffold626    140258 599 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-727.000000
s ce10.chrX              5553885 566 + 17718866  
s cb4.chrX              11384030 615 + 21540570  
i cb4.chrX              I 59 C 0
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeSp111.Scaffold626    140258 599 -  1189296 I
e caeRem4.Crem_Contig0   2290982 2103 -  4500979 I

a score=-3436.000000
s ce10.chrX              5554451 113 + 17718866 TTTTTCTTTTTTCAGATTAATCTTTTCTGTGTGTATTTTTCGATTGTCCATTTGGATGTTGAATAGCTCAATTTCG--AGTTAAAGTCTTTCATACTTCCGAGAAGCTT----CGATAA
s cb4.chrX              11384645  85 + 21540570 ----------------ttctcattttcaatat---tttcaatat-----gTATGCA--AT-CAAagcttaaaattctgaattttgattttgta-------gAGCATCGTATTACCAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2293085 109 -  4500979 tttctgttcTTCCTAGTTCTCTGTTTCCATatacattttctctt-----ctttggA--GTGCACAGCTTAAACTTC--AATCTAAATTTCCCACAATCGGAAAGACCTCATT-TCAACT
i caeRem4.Crem_Contig0  I 2103 C 0
e caePb3.Scfld02_0       3822312 1272 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeSp111.Scaffold626    140258 599 -  1189296 I

a score=2175.000000
s ce10.chrX              5554564 6 + 17718866 GGGTCA
s cb4.chrX              11384730 6 + 21540570 GGCTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2293194 6 -  4500979 TGGTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3823584 6 +  4147112 GGGTCA
i caePb3.Scfld02_0      I 1272 C 0
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e caeSp111.Scaffold626    140258 599 -  1189296 I

a score=7580.000000
s ce10.chrX              5554570 632 + 17718866  
s cb4.chrX              11384736 614 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2293200 629 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    140857 678 -  1189296  
i caeSp111.Scaffold626  I 599 C 0
s caePb3.Scfld02_0       3823590 755 +  4147112  
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold18194   736906 3912 +   823664 I

a score=-12524.000000
s ce10.chrX              5555202 55 + 17718866 -----------------CTTCCAGGAAATTAAATAT-----------GGGT---TTCTTGTTTTCCTAT--------AGCCCAGACTTCTATGG
s cb4.chrX              11385350 66 + 21540570 tcctcaaaaaataaagattt---gTGCAAAGAATCTCGACAATTAATGAGTGTTTAGTGGtttctgttt-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2293829 33 -  4500979 TT-------------GTTTT---G------GAATAT---------ATGA-----TAccagttttcatgt-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    141535 47 -  1189296 ----------------CCTT---GTACTTtgatttt-----------gactttttcctTGCCTTTTAtcaaatacga-----------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3824345 73 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I

a score=43402.000000
s ce10.chrX              5555257 416 + 17718866  
s cb4.chrX              11385416 467 + 21540570  
i cb4.chrX              C 0 I 505
s caeRem4.Crem_Contig0   2293862 509 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    141582 431 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3824418 439 +  4147112  
i caePb3.Scfld02_0      I 73 C 0
e caeJap4.Scaffold18194   736906 3912 +   823664 I

a score=864.000000
s ce10.chrX              5555673 141 + 17718866 --------------------ACACGTAAGAAGTATGGAATCTTTCCCCCCATCCCTCCTTTTTTTCCAATCCGCTACAAATTTCTGATTGTCATGCAATCTCTGTCAAACCTAACGCTCAAATGAATAGTGATTTGTTAATTGAA-----------AATCAGCGACTATTCA
s caeRem4.Crem_Contig0   2294371 136 -  4500979 cttagtctttttttCTGGTTACACTT-----TTTCCGAAGAATCCC--------------------------TTAACTAATCTCAGATTGtcatgc-aatttttcaaaacttgcaTT---AGAAAACAGCCATTT-TCatttgtattttctgaaataatcaaGAACTATTCA
i caeRem4.Crem_Contig0  C 0 I 318
s caeSp111.Scaffold626    142013 118 -  1189296 ---AGGGCTT--------AGAC---------TTTTGGAAGTCTTCCCTACTCC-------------------TCAACAAATCTTAGATTGTCATGCAAACGGCGCCAAACCTGGAT-------GAGCA--------CTATTTCAATAATTCGAAATAATCAAACGCTATTCA
i caeSp111.Scaffold626  C 0 I 276
s caePb3.Scfld02_0       3824857 118 +  4147112 ---agttttc--------atacactt-----tttCGGAAGACTTTCCCCTTTTC-----------TCAA---CCAACAAATCTTAGATTGTCATGCAAACTCCGTCAAACCTGAATT----GAGAG------------ATTTCAA-------ATATAATCAAACACTATTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e cb4.chrX              11385883 505 + 21540570 I

a score=611.000000
s ce10.chrX              5555814 53 + 17718866 GAAAAAGTTT----GGCGCCTTCTTTTTAATTTTTTtttgccttcttcctatattaa
s caePb3.Scfld02_0       3824975 53 +  4147112 ----AAATTTCCTGGAATTCTCCTTCTCAGAagttatctgtttttttccaatcccaA
i caePb3.Scfld02_0      C 0 I 289
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e cb4.chrX              11385883 505 + 21540570 I
e caeSp111.Scaffold626    142131 276 -  1189296 I
e caeRem4.Crem_Contig0   2294507 318 -  4500979 I

a score=0.000000
s ce10.chrX              5555867 1890 + 17718866  
e caePb3.Scfld02_0       3825028  289 +  4147112 I
e caeJap4.Scaffold18194   736906 3912 +   823664 I
e cb4.chrX              11385883  505 + 21540570 I
e caeSp111.Scaffold626    142131  276 -  1189296 I
e caeRem4.Crem_Contig0   2294507  318 -  4500979 I

a score=365.000000
s ce10.chrX              5557757 18 + 17718866 AACTCAACCGAATCAAAC
s caeJap4.Scaffold18194   740818 17 +   823664 AACTGAAGTGAAT-AAAG
i caeJap4.Scaffold18194 I 3912 C 0
e caePb3.Scfld02_0       3825028 289 +  4147112 I
e cb4.chrX              11385883 505 + 21540570 I
e caeSp111.Scaffold626    142131 276 -  1189296 I
e caeRem4.Crem_Contig0   2294507 318 -  4500979 I

a score=-987.000000
s ce10.chrX              5557775 77 + 17718866 TTTTAACAAAAAAAGTTA------AAA----GAATTCAATCAAACAATTTCAGCATGAACTCACATGAACTCACTACTG----TTCACATC
s caeSp111.Scaffold626    142407 84 -  1189296 TTATAATAAAAAGagtca------aatttttgaattgaacaaCAAAACTTAAGT-TCATATAGCATGAACTCACAATCGAGGTTTTCGAGG
i caeSp111.Scaffold626  I 276 I 1
s caeJap4.Scaffold18194   740835 72 +   823664 ATTTAAGACGAAAACTAAACAAGGAAA----AGATTGAAGC-CATAATTTTGAC-------AGCATGAATTCACCAAGG------TAGAA-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3825028 289 +  4147112 I
e cb4.chrX              11385883 505 + 21540570 I
e caeRem4.Crem_Contig0   2294507 318 -  4500979 I

a score=0.000000
s ce10.chrX              5557852 1 + 17718866 T
e caePb3.Scfld02_0       3825028 289 +  4147112 I
e caeJap4.Scaffold18194   740907 0 +   823664 C
e cb4.chrX              11385883 505 + 21540570 I
e caeSp111.Scaffold626    142491 1 -  1189296 I
e caeRem4.Crem_Contig0   2294507 318 -  4500979 I

a score=1270.000000
s ce10.chrX              5557853 6 + 17718866 TGAATG
s cb4.chrX              11386388 6 + 21540570 taaaac
i cb4.chrX              I 505 C 0
s caeRem4.Crem_Contig0   2294825 6 -  4500979 TAAACT
i caeRem4.Crem_Contig0  I 318 C 0
s caeSp111.Scaffold626    142492 6 -  1189296 TAAAAC
i caeSp111.Scaffold626  I 1 C 0
s caeJap4.Scaffold18194   740907 5 +   823664 -GAACG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3825028 289 +  4147112 I

a score=273988.000000
s ce10.chrX              5557859 2575 + 17718866  
s cb4.chrX              11386394 2546 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2294831 2557 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    142498 2609 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3825317 2782 +  4147112  
i caePb3.Scfld02_0      I 289 C 0
s caeJap4.Scaffold18194   740912 2481 +   823664  
i caeJap4.Scaffold18194 C 0 I 104

a score=289866.000000
s ce10.chrX              5560434 498 + 17718866  
s cb4.chrX              11388940 510 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2297388 497 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    145107 484 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3828099 507 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   743497 502 +   823664  
i caeJap4.Scaffold18194 I 104 I 59

a score=-10018.000000
s ce10.chrX              5560932 72 + 17718866 CAATTGTTGTACTC----------ATAAATCATTAAAC-TTGTAAAAAG---ATTGATTTGACAA-AATACGAAGACATGCTTATTG
s cb4.chrX              11389450 48 + 21540570 CACTTTCAAAACAT----------ATAAATCATTTCAAATTGCATTAAG--------TTTCACAA-A--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2297885 55 -  4500979 CAATCGATAAccatccattttttcataaatcattt----tttcttgaaa--------tttcacaacA--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    145591 41 -  1189296 -TATTATAATGAAT---------CGTTGatca-------ttgttttcaa---gaCAATTT------A--------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3828606 50 +  4147112 TTATTGTGGAATAT---------TATAAAGTA-------TCGCTTTAAAATTGCCGATTTTgcga-a--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   743999 59 +   823664 I

a score=-12173.000000
s ce10.chrX              5561004 51 + 17718866 GTACTTGTGAATAATAACCCTACTTTTAAAAGATAGTTTTGATATTAATAC
s cb4.chrX              11389498 14 + 21540570 -------------------------CCCAAATATACTCT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2297940 14 -  4500979 -------------------------ACAAAAGATAATTT------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    145632  7 -  1189296 -------------------------TTCATAC-------------------
i caeSp111.Scaffold626  C 0 I 21
s caePb3.Scfld02_0       3828656  7 +  4147112 -------------------------ttcaaaa-------------------
i caePb3.Scfld02_0      C 0 I 23
s caeJap4.Scaffold18194   744058 40 +   823664 ATGTTTGCTAATAAAAGTTT-----TCTAAACTTGTTATTATTAT------
i caeJap4.Scaffold18194 I 59 I 7

a score=-18378.000000
s ce10.chrX              5561055 79 + 17718866 GCGAGGATTATTTTTGAATTTTTAGAGTTAAGAAACTGTCATTCAAAA---TGAGGCGTTATAATACACAAGTTTCTCATTT
s cb4.chrX              11389512 31 + 21540570 ----------------------------------------GTTCA-----------TGTTACAATGGAATAACTTGTGATCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2297954 19 -  4500979 ---------------------------------------------------------------CCAGAGAAACTAACAAATT
i caeRem4.Crem_Contig0  C 0 I 3
s caePb3.Scfld02_0       3828686  8 +  4147112 -----------------------------------------------------------------ATGAAAGC---------
i caePb3.Scfld02_0      I 23 C 0
s caeJap4.Scaffold18194   744105 46 +   823664 ----------------------------------GCATGGATTGACAATCTTTATCGATAACAGACCACTAACTGGTGAT--
i caeJap4.Scaffold18194 I 7 C 0
e caeSp111.Scaffold626    145639 21 -  1189296 I

a score=150367.000000
s ce10.chrX              5561134 156 + 17718866 TTTGAATGTTTCTAACTTT-CAACTTTCAGGTATTCATGACAAAGAAACGAACCCGGGACAACAAATCGGTCATGAGTGAGTTCAAAGGGGGCGATTTGAACAAGTACACAGCAAAGACATATGCCATACAAAATGGGAACGAAGTTTTTGGAGGTA
s cb4.chrX              11389544 156 + 21540570 -TGGAATAGTTCTaactttgcatttttcaggttttcatgACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTT
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2297976 157 -  4500979 TTTGAACTCCTCtaactttccatttttcaggtcTTCATGACCAAGAAACGGACAAGAGACAACAAATCCGTCATGAGTGAGTTCAAAGGTGGAGATCTCAATAAGTACACCGCTAAGACTTATGCCATTCAAAATGGAAACGAAGTATTTGGAGGTT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    145660 157 -  1189296 TTTGAATAGTTCTAacttgtcatttttcaggtcTTCATGACCAAGAAACGAACTAGAGACAACAAATCTGTTATGAGTGAGTTCAAAGGAGGTGACCTCAACAAGTACACCGCGAAGACTTACGCCATCCAGAATGGGAATGAAGTATTCGGAGGTG
i caeSp111.Scaffold626  I 21 C 0
s caePb3.Scfld02_0       3828694 157 +  4147112 TTTGAATAGTTCTaactttgcatttttcagGTCTTCATGACCAAGAAACGGACCCGGGACAACAAATCTGTTATGAGCGAGTTCAAGGGTGGAGACTTGAACAAGTACACCGCCAAGACATATGctattcaaaatggaaatgaggTGTTCGGAGGTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   744151 135 +   823664 ----------------------ATTTTCAGGTCTTCATGACAAAAAAGCGCACTCGGGACAACAAGTCTGTTATGAGCGAGTTTAAGGGAGGCGATTTGAACAAGTACACTGCTAAAACCTACGCCATTCAGAATGGAAACGAGGTTTTCGGAGGTa
i caeJap4.Scaffold18194 C 0 I 205

a score=-118827.000000
s ce10.chrX              5561290 453 + 17718866  
s cb4.chrX              11389700 349 + 21540570  
i cb4.chrX              C 0 I 129
s caeRem4.Crem_Contig0   2298133 212 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    145817 193 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3828851 487 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   744286 205 +   823664 I

a score=-13707.000000
s ce10.chrX              5561743 96 + 17718866 AAAAAATTTTAGTTTTTTTTTCTTTTTTTTCTAAAATGAAGCTAGttattttaatacttaaatatataaattaGGCACGCAAAT------ATGCGCTCCCAA
s caeRem4.Crem_Contig0   2298345 32 -  4500979 ---------------------------gttttcagttctt--------------caat--acttcaaaaaataca---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    146010 45 -  1189296 ---aga-------------------gttttttcagataaa-----------------------atataaaaaacgtCC------------TTATGTTGTCAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3829338 80 +  4147112 --CAGA-----------------TTATGTTTTAAGTTGAACTCAG-TATGCTGCGAGT--ATTATATAAATAACAACCAAAACTCTACTATAACAGTCCCAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   744286 205 +   823664 I
e cb4.chrX              11390049 129 + 21540570 I

a score=-16214.000000
s ce10.chrX              5561839 221 + 17718866 AGGATATTCAC----AAAATGAAAAAAAAAGAAAGAAAAACAAT----TCA------ATAACATAGTTGTTTTT----------------TAGAATTCCTTTTTA-------------------------TATTT-----TTTATATTCTACTGTTTTGTATTTCCGCCAT----CCAATGTTATGATATACTCTGAAAGAGTCTTTTTCCGAGTTTCATCA-----------------TTTTTT-------ATGGTTAT-AGAATTACAAACAATAGACATGAC--ACCACC-----CTCTTTGTTTTCTCAT--AT--------G
s cb4.chrX              11390178 276 + 21540570 atgattttcac---------gGGGgatataaaaagaaaaacact----TTGTA----ACATTCTTTTTGCTTCGAGAATACACTGGAAACTGGAACATTATGCTTTGAAACTTCAAGAATCCCTCacaggtttttaaaaaattcactcAATCCGCCTGatgtttc----at---attttcattAA-------TTTGT-----TCTACTT----GGTTTCTCATTTATCATCTAGAATTCTTATTGTCATCCGCACGTCAT-TGG---CCAATAGATGGACACCAACCGCCACCACCTTCGcttcgtttttcttc--at-----tGTA
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig0   2298377 201 -  4500979 ---attttcacgATCCCTGTGGAAAATACAatgcaaaaaacatt----tcaga----ataatattttt----------------------tagttttttccgttt-------------------------ttttt---------------tcttcttgatttctc----at----ttcacattgaaaaat-ctctgt-----ttttttt----gttatttca-----------------ttaTTAT------CACGTCAT-TGG---ACAATAGATGGACACC-ACCGCCACC-----CGCTTCGTTTTCTTCC--ATACGTGTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    146055 203 -  1189296 TTTACTGTCCC-----TCGGGCGGAATACAGAATAACAAGAacttgaaacgaaaa--atcatttttttattttt----------------cagttttttatttta-------------------------ttttc-----tctcatttca--taCATGATTTCTCAA--ACGGAATCCATAATT--------TGTGA-----TTGTTTT----GTCTTCTTA-----------------TTATAA-------CACGTCAT---------------TGGACACTGA--ACCAcc-----ctcttcgttttcttctccgt----ATATG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3829418 198 +  4147112 AAGAGTTTCTA-----ACATATAGAATACAG-----CCAAAACT----ACGGAAAggatatttttctttttcta----------------tagtctttttccaac-------------------------ttcct-----ttttattttgtctacatgatttttt----atggaatctatgct-------------------ttttttt----gtcttttca-----------------ttATAC-------CACGTCATTTGG---ACAATAGATGGACACT----ACCACC-----CGCTTCGTTTTTGTCT--AT----GTGTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   744286 205 +   823664 I

a score=87969.000000
s ce10.chrX              5562060 649 + 17718866  
s cb4.chrX              11390454 695 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2298578 664 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    146258 672 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3829616 718 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   744491 630 +   823664  
i caeJap4.Scaffold18194 I 205 I 125

a score=48372.000000
s ce10.chrX              5562709 149 + 17718866 GTTCTCACCCCT---CCCC----TCCTCCGGTTCGGTTTCCCAACAAATATTCATATTTCTGACTCCCATTTGTACCTTGTTATTGGATTGTC-GGCGTC--CCTATGTTGTACG--TTGGCATCGAGCTGCTGCCTGTCAGTCAGCAGTCATCAACTCAA-----
s cb4.chrX              11391149 136 + 21540570 ATTTTTCCTCacaattcca----ttttt------------ccataGATCCTTCATA-ACC-------CAATTGTACCTTGTTATGGGGTTGAGGGGCGTT--CATATCTTCTAGAAC----TTACGAGCCGTCAGTCAGTCGTCTGCAGTCAGCAACCAAAGTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2299242 132 -  4500979 gttttttctcAC---CCCC----TTCTT---------------GAGAATATTCCTA-TTCTGACTCGCATTTGTACCTTGTTATTGGTTT----GGTGTT--CCTATGTTCTAGGACTCGGTTGCGAGCCGTCAGTCAGCAGTCGGCAGTCATCAACTGAA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    146930 147 -  1189296 CTTCTTTCTCAC---CCCCTTCGTCGTT----TCGGTTTCCCAGCAAATATTCGTA-GTCGGTCTCCCATTTGTACCTTGTTATTGGATT----GGCGTTCCCCTATGTTCTAGGAGTTTGTTACGAGCCGTCAGTCAGCAGTCGGTAGTCATCAACT-------A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830334 143 +  4147112 -ttttttctcac---ccCT----TCTTC----TCAGTTTCCCAGAGAATATTCGTA-TTCCATCTCCCATTTGTACCTTGTTATTGGATT----GGCGTT--CCTATGTTCTAGGACTTTGTTACGAGCCGTCAGTCAGCAGTCAGAAGTCATCAACTCAA----G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   745121 125 +   823664 I

a score=-30343.000000
s ce10.chrX              5562858 136 + 17718866 GTAGCTG-----------TTTT----ACGATTC-----CTAAGATCTCAT--TTTTCTATTTCATAATGATTTGGTTTATTCGTTATTTAATATTAGTAGTGTCAGAAACTGCT-CGACGTTCTTCCT---------CTCAATTCCCCCGTTTGTGAAGTGTCCACCC
s cb4.chrX              11391285 133 + 21540570 TCAACCAAAGAACCCCCCTTTGCTGTCCAAATATCCTTCTTAagtctcat--tttt--------------tcctcCCA----TTTTCATAATGATTCTTTTCTTAAGAGGCCCTGACACTTTCTTCAC---------TTTCTCCGAAC------TGAGGTGTCTACCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2299374 131 -  4500979 -CAACCA----------CTCTG----ACAAA------TCTcaaatcacat--tttc-------ataaTGATCCACAAAAG-CTTTCGGTGCTGGTTGTGGTGACAGAAACACTCGGAGCGTTcttcccagtttttttttcattcccat------tGGGGTGTCCACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147077 109 -  1189296 CCAAT-----------CCGCTG----ACAATTC-----------GCCCAT--TTCA--------TAACGATGCCGAGTGT--TTTTGGTGCTAGTTGCGGTGTCAGAAACACTT-CCAcgttcatttc---------ttctt-----c------gaagGTGTCCACTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830477 109 +  4147112 TCAATTC------CCCCCTTTG----acaaatctcattttttgtgccCAT--TTCA--------TAAAGATCCGGAGTG----CTTGGTGCTGGTTGTGGTGTCAGAAAcgtt-----cttccttttc---------ctc---------------------acCACCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   745246 102 +   823664 --------------------------ACAGCTG----ACTGAAAACTCGTAATTTT--------TTACACTTCATAAAAT------GGTTTTAATCG-GTTTTTACAAACCCT--AAAATCTCAGCTG---------CTCAATTCTCC------CGG----TCCACCA
i caeJap4.Scaffold18194 I 125 I 15

a score=-990.000000
s ce10.chrX              5562994 17 + 17718866 ACCTT--ACCTTGT--GTTGA
s cb4.chrX              11391418 18 + 21540570 CCCAC-CACCCTGT--GCTAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2299505 21 -  4500979 CCTACTTACCTTGTGGGCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147186 13 -  1189296 CCTTA------GGT--GCTAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830586 13 +  4147112 CTCGG------GGT--GCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   745348 15 +   823664 I

a score=42656.000000
s ce10.chrX              5563011 39 + 17718866 GAAAATGGCAGGAAATAGATAAGTGTGCACCAGTGACCA
s cb4.chrX              11391436 39 + 21540570 GAAAATAGCAGGAAATAGATAAGTGAGCACCAATGACCA
i cb4.chrX              C 0 I 275
s caeRem4.Crem_Contig0   2299526 39 -  4500979 GAAAATGGCAGGAAATAGATAAGTGAGCACCAATGACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147199 33 -  1189296 GAAAATGACAGGAAATAGATAAGTGAGCACCAA------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830599 39 +  4147112 GAAAATGGCAGGAAATAGATAAGTGAGCACCAATGACCA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   745363 39 +   823664 GTAGATGGCACAAAATAGATAAGTGAGCACCAATGATCA
i caeJap4.Scaffold18194 I 15 C 0

a score=8972.000000
s ce10.chrX              5563050 36 + 17718866 ACAAAGCTCAATCTGTGCAAA-GGTGTGCATGTACTT
s caeRem4.Crem_Contig0   2299565 36 -  4500979 TAGAGACTCATTCTGTGCGAA-GGTGTATGTGTACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147232 37 -  1189296 GAGAGCCTCAAATTGTGCAAAAGGTGTAGGTGTACTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830641 35 +  4147112 GTAGGCCGCAATCTGTCGAAA--GTGTAGGTGTACTT
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   745402 21 +   823664 ------------ACGTGCAAG----GTGTATGTACTT
i caeJap4.Scaffold18194 C 0 I 346
e cb4.chrX              11391475 275 + 21540570 I

a score=-1194.000000
s ce10.chrX              5563086 2 + 17718866 TA
s caeRem4.Crem_Contig0   2299601 1 -  4500979 C-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147269 2 -  1189296 TG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3830676 2 +  4147112 CA
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I

a score=-194.000000
s ce10.chrX              5563088 10 + 17718866 ATGTCAGATT---
s caeRem4.Crem_Contig0   2299602 10 -  4500979 GTGTTAGCTT---
i caeRem4.Crem_Contig0  C 0 I 69
s caeSp111.Scaffold626    147271 13 -  1189296 ATGTTTAATGGAC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3830678 27 +  4147112 I
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I

a score=566.000000
s ce10.chrX              5563098 17 + 17718866 CCATAGTTTTTTGTTTC
s caeSp111.Scaffold626    147284 17 -  1189296 TTTTAGATCATTGTTTC
i caeSp111.Scaffold626  C 0 I 208
e caePb3.Scfld02_0       3830678 27 +  4147112 I
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeRem4.Crem_Contig0   2299612 69 -  4500979 I

a score=0.000000
s ce10.chrX              5563115 39 + 17718866 GAGCTTGAAAGTGTGGTGGAGAAATAGGAACAATTGCCC
e caePb3.Scfld02_0       3830678 27 +  4147112 I
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I
e caeRem4.Crem_Contig0   2299612 69 -  4500979 I

a score=-17.000000
s ce10.chrX              5563154 32 + 17718866 TTTTTGCAATTTTCTCAAGGTTAAGCTTATTA
s caePb3.Scfld02_0       3830705 22 +  4147112 ttttcataatt---tcgaaGTT-------CTC
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I
e caeRem4.Crem_Contig0   2299612 69 -  4500979 I

a score=-3250.000000
s ce10.chrX              5563186 78 + 17718866 GTTTTAAAAGTGAATTTTTAGTATTTTTCATAGGATTTATTTTTTAGTTGATAAAAACCACTTAAAATTTGCAGTCAA
s caeRem4.Crem_Contig0   2299681 58 -  4500979 GTTTTAAAGAT--ATTTCGAGTa--ctataattattttatttcttcatcTATaaaa-------aaaGTT---------
i caeRem4.Crem_Contig0  I 69 C 0
s caePb3.Scfld02_0       3830727 47 +  4147112 Gtttcaaattc--atgaaacGTAGTCCACGAAAACTTAATTACAGC-----TAA------------------------
i caePb3.Scfld02_0      C 0 I 16
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I

a score=-83.000000
s ce10.chrX              5563264 50 + 17718866 ACACTGACGATTATGTTTCATCCACTTAAACTTAGAATTAGTCCAGAGTG
s caeRem4.Crem_Contig0   2299739 44 -  4500979 ------ACTATCAGTCTTAATACTTCTAATGTTTTGGTCACtctcgaaaa
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3830774 16 +  4147112 I
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I

a score=-8033.000000
s ce10.chrX              5563314 167 + 17718866 AACTTTTAATTAGGCTTTCATTTTTTGTAGCAAATAAAAGGAGAT---ATTCGTTTG-CCGAAATTGCTCCGAATTTCTCAAAAAAAACCAAAATGTTTTAGAA--ATTTGACATTTGGTTGGATTGATCCGCCACTTTGGATTATTCAAAACGTATTTAaaggcttccacaa--
s caeRem4.Crem_Contig0   2299783 118 -  4500979 tattttttatcaacATTAC---TTTTACAAGTAGCTATATTTGCCTTGCTTTATTTTGCCAGGAGTGTTC--------------------AAAGTATCTCGGATATAGTTTACAGTCTAATGAGA------GT----------------------------GGTCTAATAAGAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3830790 117 +  4147112 -------------------------AACTATTAGTAAAATGAGATTAGCTTCGTTTT-TGGAGAGCGTTC-------------AACAA--AAcgtattttgagt---tttgaaactgtaatacat------gctatttt------ttctatttcttttcaaagtcTAGCACCA--
i caePb3.Scfld02_0      I 16 I 61
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I

a score=-3054.000000
s ce10.chrX              5563481 124 + 17718866 gggcgccgaaacgcctgcctcacccgccttgagtcgCAAAAGCACgacaggtgtcaggcaggcatctgaccctaaaacagcgcgtgccttccgtggaTGAGTATTTAGACAGAATTCTGACTAA
s caeRem4.Crem_Contig0   2299901  18 -  4500979 --------------------------------------AAAACATG---------------------GACCTT-----------------------------------------TTCT------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3830907  61 +  4147112 I
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I

a score=-8248.000000
s ce10.chrX              5563605 132 + 17718866 ATCCATTTCAAAACTAAAATAACATATATATTAAGTTACATACTTTCTAAAATCAAAAAAAATTGCAAGTTTGTATTTTTAATT-----TTATAAACCAATTCCTCTACTATGTATATGGGACATTTAATACTGCTA
s caeRem4.Crem_Contig0   2299919  28 -  4500979 ----------AAAT--GACGTACACTAAAAGAG--------------------------------------------------------TTACCCA-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3830968  93 +  4147112 ATTTATTcccaaatgagaaaaacacaaaaatagcCTGGGA-------TCGAGTCAAAACAAATGAC---TCTGACCTTCTTAGCGtactttatcaaaaaactc----------------------------------
i caePb3.Scfld02_0      I 61 C 0
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I
e caeSp111.Scaffold626    147301 208 -  1189296 I

a score=-2509.000000
s ce10.chrX              5563737 14 + 17718866 CTAAACGAGTAAGC--------
s caeRem4.Crem_Contig0   2299947  8 -  4500979 ------GAGTAAGC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147509 14 -  1189296 --------CTAAAAGAGTAAct
i caeSp111.Scaffold626  I 208 I 9
s caePb3.Scfld02_0       3831061  5 +  4147112 ---------taaaa--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   745423 346 +   823664 I
e cb4.chrX              11391475 275 + 21540570 I

a score=2250.000000
s ce10.chrX              5563751 7 + 17718866 AACATCA
s cb4.chrX              11391750 7 + 21540570 aatgtca
i cb4.chrX              I 275 C 0
s caeRem4.Crem_Contig0   2299955 7 -  4500979 AAAAGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    147532 7 -  1189296 aaaagca
i caeSp111.Scaffold626  I 9 C 0
s caePb3.Scfld02_0       3831066 7 +  4147112 aaaacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   745423 346 +   823664 I

a score=96671.000000
s ce10.chrX              5563758 154 + 17718866 AA---ATGTGTTGGGATTCT--CAGCAGAACAAGAATAACCGAGTGTT-C--CCCCCACTTTGGATTGCCGAAGCGTGAAAGATTTGATCGTTGTCT-----------TTTCCTGGCCTCTCGCATCATC--CTTC--AACTTATTCCGTCCTTTTCTGAGTATT----TGTGTTTTTTTT
s cb4.chrX              11391757 167 + 21540570 aaatgatGG-TTAGGATTCTTGCTCTAGAACAAGAATAACCGAGTGTT-CATCCTCCACTTTGAACTGCCGAAGCGTAAAGGATTTGATCGTTGTCTCTGGGTTGGACCTTCT--CTCGCTC---TCATC--CTTC--CACCCATTCTGTCCTTTT-TTGGAGTAttcatctgtttttt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2299962 155 -  4500979 AA---ATGT-TTAGGATTCT--CACTAGAACATGAATAACCGAGTGTT-C--CCTCCACTTTGGACTGCCGAAGCGTGAAAGATTTGATCGTTGTCTCAGCCT-----ATCCT--CTCTCAC---TCATC--CTTC--AACCCATTCTGTcctttt-tgagtattttcccgtgtttttt--
i caeRem4.Crem_Contig0  C 0 I 82
s caeSp111.Scaffold626    147539 147 -  1189296 AA---ATGT-TTGGGATTCT--CACTAGAACGTGAATAACCGAGTGTTCC--CCTCCACTTTGGACTGCCGAAGCGTGAAAGATTTGATCGTTGTCT-----------ATCCA------CTC---TCATC--CTTCCACACCCATTCTGTCCTTTT-CGAGtattttc-catgtttttt--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3831073 150 +  4147112 aa---atgt-ttgggATTGT--CAATAGAACGTGAATAACGGAGTGTT-C--CCTCCACTTTGGACTGCCGAAGCGTGAAAGATTTGATCGTTGTCT-----------ATCCATGGCCTCTC---TCATC--CTTC--CACCCATTCTGTCctttt-tgagtattttc-catgtttttt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   745769 132 +   823664 AA---GTGT-TTTGGATTCA--C-TTGGAACGTGAATAACCGAGTATT-C-TCGTCTACTTTCGGCTGCCGAAGCGTGAAAGATTTGATCTTTGTCT-----------GTGCC--------T---TCATCATCTGC--AAGGAATTCTTTCTATAC-------------ATTGTCTCT---
i caeJap4.Scaffold18194 I 346 C 0

a score=-21618.000000
s ce10.chrX              5563912 119 + 17718866 GCTCTGTTTCGCCTCAACCATTGTAGTTGAGTCCTAGTTTTAAGTTTTATCGTCGAGTTCGAATATTTTTGAGCCCA--GTTTTTTCAAGTTTT-CAAGACAG--GAGT-TTCA----TTTGAGAGGAT
s cb4.chrX              11391924  91 + 21540570 --tttat-------------tcgaga-------ctgggtt---gtttagtttt----------ttctctatattttt--attttttgaatttttctaacaCCGGTgtgg-tccaaaattttgagaggat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    147686  76 -  1189296 ---------------------cagagct-----CCAACTT---GTTtagctct----------ttttttgtagtaCACGGAGTTCTCAGTTT---TAACAGTG--GAGG-TCCA----ATTGAAA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3831223  67 +  4147112 ---------------------catag-------caagttt---ggttttttgt----------ttttctctagcCAA--------TAAACTT---TAACACCG--GAGGTTTCA----TTTGAGA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   745901  44 +   823664 ----------------------------GCActtcacttt---tttaagtctt----------tgttgtcttgcact------------------taaaaggg--------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2300117  82 -  4500979 I

a score=124884.000000
s ce10.chrX              5564031 272 + 17718866 GGATGCTT--TTTCCTCCATTTTCAACTTC--TACTTTGCTGCTTC-CACCACCAGGAAAAGC------ATAACCAAATTAAGTCAGTGTACAGATTCGATTACTTTCCTT----------------------TTCC------ACAACACAAGCCTCATTCCAC-AAACCAAACACAAATCCACTTCATTCTTCCTTT-------------------T-----TCT-CAGC--TTGCAATTTGTTCCC----GCGTGTGTCCAGTGAAATGGACAT----------CATGGAAC-TTTCTGATTCG------T--GACTACTTACTCATAATCTTTGT-----TTCTT---CCGCG-TTTGTTTTCCGACA
s cb4.chrX              11392015 326 + 21540570 ----gctt--ctttcttc--tttttactttcctactttgctttctt-cGCTACCAGAAAAAGC------ATAAGTGAATTAAGTCAGTGTACAGATTCGATTACTTTCCTTTCTACCACCCCTCCGCACTCACTTCCATTTCCACTAC----GCTCATTTCTAC-AAACCAAACACAAATCCACTTCATTTTTCCTCT------CAGTCCACCACACTATCAACAc-caacttttgcaatttgttCAC----CCTGG-GTCCAG-----TGGGCAGCATCATCGCACATGGAACATGGCTGATTCGGCCAGCT--ACTTACCCTCTCATAATCtttgt-----ttcttgttttccg-tttccttctttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2300199 287 -  4500979 GGATGCTT--CTTCTTTC--TGTCTACTTTTCTACTTTGCTTTCTA-CATTACCAGACAAAGC------ATAACCAAATTAAGTGAGTGTACAGATTTGAttactttcttt----------------------ttccttttccaccACC-AAGCCTTATTCTAC-AAACCAAACACAAATCCACTTCATTCTTCCTCTGCC---CGGTCCACACCACT-----CCT-CAAC--TCGCGATTTGTTCCC----GCTAG---TCAG-----TGGGCAT----------CATGGAAC-TTGCTGATTCG------T--GTCTACTTACTCATAatctttgt-----ttctt-cttcccg-tttccttttttcaa
i caeRem4.Crem_Contig0  I 82 C 0
s caeSp111.Scaffold626    147762 286 -  1189296 TGATGCtttcttattctc--tttcCACTTT--TACTTTGCTTTATC-TACCACTAGAAAAAGC------ATAAATGAATTAAGTCAGTGTACAGATTCGattactttcttt----------------------ttcctttcccCCCTAA-AAGCCTCATTCTTCGAAACCAAACACAAATCCACTTCATTCTTCCTCTCTC--CCGGTCCAC--CACT-----CCTCCAAC--TTGCAATTTGTTCCC----GCCAG---TCAG-----TAGGCAT----------CATGGAAC-TTGCTGATTCG------T---CCTACTTACTCATAATCTTTGT-----TTCTT---CCGcgtttttcctcttccga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3831290 287 +  4147112 GGATGCTT--CTGCTCAC--TTTCTACTTT--TACGTTGCTTTCTT-TACCAACAGAAAAAGC------ATAACTGAATTAAGTCAGTGTACAGATTCGattactttcttt----------------------ttcctttctacCACCA-AAGCCTCATTCTAC-AAACCAAACACAAATCCACTTCATTCTTCCTCTCCCTGTCGGTCCAC--CAAT-----CCT-CAAC--TCGCAATTTGTTCCCTTCGACAAG---TCAG-----TGGGCTT----------CATGGAAC-TTGCTGATTCG------T---CCTACTTACTCATAATCTTTGt-----ttctt---cctcg-ttttctttttttga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   745945 209 +   823664 -------------------------gcttt----cttttcttttttgtaccACC-----AAGCCTTGAAATAAGTGAATTAAGTCAATGTACAGATTGGATTACTTTAATT----------------------TTCC---------------TCCTTATTCTTC---------------------------TTTCTCACC--------------CACT-----CCC-------TTTCAATTTGTTTCA----CCGAG-----AG------AAACAT----------CC--GAGG-CTGCTGATTCA------AAAGCCTGCTTACTCATAATCTTTGTCTGAATTGCT---CCTTC-CTTCTTTTTTGATA
i caeJap4.Scaffold18194 C 0 I 205

a score=20519.000000
s ce10.chrX              5564303 109 + 17718866 AAAAGAGAGCTTCCT---------CTTTTCAAC----ATGTGCT----CTTTTTTTTTAAATGACTGCGGATTTA-----GGGTGCTCAGCAGTGTCAGTACCACCAAATATGGAAAATAATGCTCTTTCG
s cb4.chrX              11392341 117 + 21540570 tt---ggagcgCCAACAATATTTGGTTTTCAAC----ATGCGCTTCG-GTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCG------GAGCGCCACccaaaatggaaaataatGTATTTCTG
i cb4.chrX              C 0 I 574
s caeRem4.Crem_Contig0   2300486  92 -  4500979 ac---tgagCCCCC----------GTTTTTAACAACAATGCGCTCC--TTTTTTCCTGATATGAGAGAGGATTTA-----GAGTGTT---------GAGCGCCACCCaacatgaaaaaaag----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    148048  95 -  1189296 AA------ATTCC-----------GTTTTTAAC----ATACGcttcc-tttttttgtgatatgGGGGAAGATTTG-----GAGTGCT---------CGGCGCCACCCAACACGGAAAATAATGTTCCGGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3831577  91 +  4147112 aa----gcgcTCC-----------GTTTTTAAC----ATGCGCtcctattttttcatgataggAATGAGGATTTA-----GGGTGCT---------CAGCGCCACCC-------GAAATGATGTTCACATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I

a score=-4170.000000
s ce10.chrX              5564412 33 + 17718866 ATGTTC----CATTTTTGTGTGAACTAATATTTTTCT------------
s caeRem4.Crem_Contig0   2300578 33 -  4500979 atgTTC----CGTTTCGGCA------------TTTACTCAGAATCCTTT
i caeRem4.Crem_Contig0  C 0 I 328
s caeSp111.Scaffold626    148143 16 -  1189296 ATGTTC----TATTCT-----------------Ttgt------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3831668 22 +  4147112 GAATTCGGCACACTCTGG---------------TTGT------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I

a score=-975.000000
s ce10.chrX              5564445 37 + 17718866 TAACATTACTGTCATTGACCTTAAAGATAAAATATCA
s caeSp111.Scaffold626    148159 37 -  1189296 ttctcattctgaaGTTGAGTTTCATGATAAAAGCTCA
i caeSp111.Scaffold626  C 0 I 269
s caePb3.Scfld02_0       3831690 26 +  4147112 TACTAAAACCGTAGCAGAA---AATAATA--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=-1640.000000
s ce10.chrX              5564482 362 + 17718866 TCAATGAAGTTGT----AGTCTATACTTTATAATTGAAAATGACCAAATGTCATAACGAAACGCAAATTTCAGATTTTTTTTAAATTTGAACTTTTTCAGTTATTTAGAGCATTCTTGCAGATTTTAACACACAGAATGTTTAAATGCAAACAATTAAAATCCCAATTTCAGCTGAAAACTCAGAGAAATGTATTTTTTGGTTGACTTCCAGAATTATCGTA---CTA--CTTTTTTGAAAACATCACGCACGAAAAAAATTTTCTTAAAAACTTAAATAAAGTACTAAAAATAAGCCTAACCTTGTTTTGTTATCTCCGAAAAGCTTTGTTAATTGTTTTCAACTAGCTGCCGTGAACAAAATTTTTTTC
s caePb3.Scfld02_0       3831716 252 +  4147112 GCA--GAActcgttttcagtttctatttt-tgatt-------------ttttgtaaacaaagacaaatt-----tttcatgaaaaatggaagttttt-------------------------------catgaaaaatagctAAAC--------TTGGAAGACCAATTCTA--CAATACTTCAGAAAAAGCCATT-----------TTCAAGAATGATTGAAAACCTAGCCATTTTTG---ACATc----------aagatttatttttagattt-----------tgaaacttggtTGAATTTTTATGTG-------------GCGTTGTGATTGATTTTGCACACAC---------CATAACTCCTTTC
i caePb3.Scfld02_0      C 0 I 136
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=0.000000
s ce10.chrX              5564844 174 + 17718866 CTTCACTGTAGTCAAAAAACTTCCATTTTATTATTGATGTTTTCTTTTATACATTTTTTAAAATTTTACCCTGTGATATTAAGGTCATATGAAATTAGTGAtgaaaaatgtgtgaaaaatgtgtgaaaaCAACAAGGTGCACATTTTTTTTAAATGAATTTTAACCAGTCTATG
e caePb3.Scfld02_0       3831968 136 +  4147112 I
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=-109.000000
s ce10.chrX              5565018 139 + 17718866 TGAGAACAATTTCTTCGATTTTCATGAAACTGGGTAATAGATGCTTGCTAGTCTTTACCACACACTGACCCCACCTTATCGTGAAGTCGTTT-----AAAGTTTAAAT---GTAAGTT-TAATATTTTAATAGCAC-ATTCTGTTTTTT
s caePb3.Scfld02_0       3832104 129 +  4147112 taaaatcaAGTTCTGTG-----CATCAAACTTT----TAGctgttttctaaattt---------ccaacctagtttttt--tgcagttctcCAACAAAAAACCTGTATTCCGTCAGTTCCAATACTCTATAATTtctaatctgtttttt
i caePb3.Scfld02_0      I 136 I 120
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=0.000000
s ce10.chrX              5565157 145 + 17718866 GAGTGGGTCTCACCACGACAGTTCCAGTGATCGCTCTAAGCTTCAAATTTCACATAATTATTCATTTAAACGTTAAAAACACGTTTTCGAAATTCCGTTTTCTAAACTGCTCACAGAAGGAGAGAATTTACCATAGAACATTAAG
e caePb3.Scfld02_0       3832233 120 +  4147112 I
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=686.000000
s ce10.chrX              5565302 21 + 17718866 AACCTAGTTTATAATAAGTTT
s caePb3.Scfld02_0       3832353 21 +  4147112 CACTCGGTTAATAatatatct
i caePb3.Scfld02_0      I 120 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I
e caeRem4.Crem_Contig0   2300611 328 -  4500979 I

a score=-2735.000000
s ce10.chrX              5565323 66 + 17718866 TTGCAAATAGATACCCCTGCGCATATCGATTTCAAATTTTAGCGGCATACTTT--GAAGAGATGAGAT-----------
s caeRem4.Crem_Contig0   2300939 63 -  4500979 TTGCGAATAG-TCTCCCAATAGCTATCTATTCTAAAATT---ACACATTCATc--acagatttcaaatt----------
i caeRem4.Crem_Contig0  I 328 C 0
s caePb3.Scfld02_0       3832374 56 +  4147112 --------------------atctatatattcctatatt---ctatgttttttcaaaaaatctcagaattgatgatgat
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I
e caeSp111.Scaffold626    148196 269 -  1189296 I

a score=6667.000000
s ce10.chrX              5565389 19 + 17718866 TCCTGTTGACAAGAAGCCA
s caeRem4.Crem_Contig0   2301002 19 -  4500979 tcttggtGACAAGATGCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    148465 19 -  1189296 TCGTGTTGAAAAGAAGCTA
i caeSp111.Scaffold626  I 269 C 0
s caePb3.Scfld02_0       3832434 19 +  4147112 TCGTGTTGAAAAGAAGCTA
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I
e cb4.chrX              11392458 574 + 21540570 I

a score=3999.000000
s ce10.chrX              5565408 13 + 17718866 ACTATTTTTC--ATT
s cb4.chrX              11393032 13 + 21540570 actatttttc--ata
i cb4.chrX              I 574 C 0
s caeRem4.Crem_Contig0   2301021 15 -  4500979 CCTATTTTTTCGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    148484 13 -  1189296 actatgtttt--ttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3832453 13 +  4147112 ACTATGTGTT--TTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   746154 205 +   823664 I

a score=115822.000000
s ce10.chrX              5565421 432 + 17718866  
s cb4.chrX              11393045 476 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2301036 484 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    148497 483 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3832466 472 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   746359 461 +   823664  
i caeJap4.Scaffold18194 I 205 I 391

a score=100856.000000
s ce10.chrX              5565853 247 + 17718866 A---AACCAAAACTGATGAG-----CAGTAGTGTCT-----TCCAACATTTATC-CTTTATT--------------TCATCGATGATTT---ATTTGCTCGGCACAATTTGTC---GTAAGGAGGGAACACCTCTTCATAGATACTT---CATTTGAAATAATTAATGTCTAAGAAGATCAAATTTCCGGATAGCGT-----TT-----T---CGAAGGC------GAAAGAGCCGTCGGAAT--------------CATGTGTAAAGTAACAAGGA----CTTCA--TCCCC------TTTTTATCAGGTTAACTCATCAAACATTTT
s cb4.chrX              11393521 274 + 21540570 aaataaggaaacaTGATAAG-----AA------ACCGCATCCCActaaattatt-ttctttc--------------------ctcttttctcatcAGTGCGGAGCAATTTGTCACAGCATTCACGGAACAC--TTTCAAGTATCCGTAACCATTTGAAATAATTAATGTCGGAGAAGATCATATTTCCGGATAGCGT-----CT-----T---CGGAGGC------GGTAGCCCCTCCGAGCCGTGTGTATAAGTGTTGTGTGTAAAGTGGAGAAGCACTTCTTCA--TCCCTTACTCATTTTTATCAGGTTAACtcatcaaacatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2301520 256 -  4500979 aaccaaagaaaaatgataag-----caTCAG-TTCTGAATTCCCACCAACTATC-CCCTCTG--------------------ATGATTT---ATAAGTGCGGAGCAATTCGTCTC----CTCTGAGAACAC--CTTCAGAGATACtt---catttgaaataattaatgTCGGAAAAGATCAGATTTCCGGATAGCGT-----CT-----T---AGGAGGC------GGTAGATCTATCGGAGCGCGTATGTGTGTA-TGGGTGTAAAGTAGGGAAGA----CTTCA--CCC--------TTTTTATCAGGTTAACTCATCAAACATTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    148980 263 -  1189296 Acccgaagaaaaatgataag-----cAGCCGTTTCTCAGTTTCTACGAAAcatcgttttctctctctatctctcttttcataatGATTT---ATAAGTGCGGAGCAATTCGTC-----------GGAACAC--CTTCAGAGATACtc---catttgaaataattAATGTTGAAGGAGATCAGATTTCCGGATAACGTGGCGTCT-----T---CGGAGGGGCGGTTAAGAGCTC-----------------------GTTGTGTAAAGTAGGAAGGA----CTTCATCTCCC-------TTTTTATCAGGTTAACTcatcaaacatttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3832938 263 +  4147112 cctcaaagaaaaatgataagcaCAACAGCGGTTTCTCAGTCTTCACTAAacatc-tcttctc-----------attttcctaaTGATTT---ATAAGTGCTGAGCAATTCGTC-----------GGAACAC--CTTCAGAGATACTC---CGTTTGAAATAATTAATGTCGGAAGAGATCAGATTTCCGGATAGCGTTGCTCCTGCACGT---CGGAGGGTGG---AGAAGCTTCTCCTCG----------------GTTGTGTAAAGTAGGAAGGA----CTTCA--CCCC-------TTTTTATCAGGTTAActcatcaaacatttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   747211 249 +   823664 ---AAATCAAAATTAATGag---------------tccatttttaaaaaacatt-ccCTTTC-------------TCTCAATTTGATTTATTATAAGTGCACAGCAATTCGCC------------GAACAC--CTCTTCCGTTGCTC-----ATTGACATAATTAATGTTAGAGAAGATCGGATTTCCGGATAGCACTGCGAGT-----TGAACGAAGAT------GAAAAAGAAGATGAGGGAGGGG---------TTTGTGTAAAGTCGGTGCAC--TTCTTCA--TACTTA-----TTTTTATCAGGTTAACTCATCAAACATTTT
i caeJap4.Scaffold18194 I 391 I 361

a score=-5550.000000
s ce10.chrX              5566100 10 + 17718866 ------TGCGGTGTGT
s cb4.chrX              11393795  9 + 21540570 ------tcgg-tGCAT
i cb4.chrX              C 0 I 1508
s caeRem4.Crem_Contig0   2301776  4 -  4500979 ------TGCG------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149243  7 -  1189296 tcaacgt---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833201  1 +  4147112 ------t---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   747460 361 +   823664 I

a score=-3724.000000
s ce10.chrX              5566110 112 + 17718866 GAGCCAGGCCAGATTTGCTTTT---ATGCTTGTTCATA------------TTTTACGATTTGCTCATG-----GTGCCCATTTTCA-AAGTTTA-----TTAAATTATCTTTTGGCT-AGATGCGAGTGTAATTTGAAT-----
s caeRem4.Crem_Contig0   2301780 128 -  4500979 -AGTGAAGACCGACTcacttttcaagaattttgacGAAGAATTGTGATGTTTTTACAA-TTTCTCATATGTTAGAGTGTCTTTTCACATGATTA-----TTGAGTTATCTTCTAACTGAGAGACGAGCTCGGTGT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149250  93 -  1189296 GACGGAAGGTCAGATCTCTTTT---ATGTTTAGCCCGAA-ATTGTGATGTTTCCGAga---ttttatgtttcattGGTTCTATTCACACGTTGA-----TTAAGT---------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833202 122 +  4147112 gagtggaGACCGAGTCGC----------TTTAGTAGGagtattttgatgtttttacaatttttttgtgtgttggAGGTTCTTTTCACAAGTTTATCACGTTAAGTTTTCTAC------AGAGG------TGGTGTAATCCTATT
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=891.000000
s ce10.chrX              5566222 7 + 17718866 AATTTGA
s caeRem4.Crem_Contig0   2301908 7 -  4500979 AATCTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149343 7 -  1189296 AATCTAA
i caeSp111.Scaffold626  C 0 I 26
e caePb3.Scfld02_0       3833324 55 +  4147112 I
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-305.000000
s ce10.chrX              5566229 35 + 17718866 AATCGGCCACAGAAA-TATAGAAAACGAAAACAGAC
s caeRem4.Crem_Contig0   2301915 30 -  4500979 TTTTGTACACAAAAAGcataaaattccaaa------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3833324 55 +  4147112 I
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I
e caeSp111.Scaffold626    149350 26 -  1189296 I

a score=-3540.000000
s ce10.chrX              5566264 46 + 17718866 ACAGCCACATTAACAAATTTTCCATTGTTTTTCTTTACTGAAATTT-----------
s caeRem4.Crem_Contig0   2301945 30 -  4500979 -----ttcatTTGTTCTTGATTCAGT-----------CGGAATTTT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149376 40 -  1189296 ------ACATTTgtacacaaaaaaat-----------tccatatttctatgaaacag
i caeSp111.Scaffold626  I 26 I 2
e caePb3.Scfld02_0       3833324 55 +  4147112 I
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-29934.000000
s ce10.chrX              5566310 236 + 17718866 CACAAAATA-------------TTAGGATTT-------------TTTCGCTTCACAAAATCCAGTTGTTGTTTAAAATTTAAGTTCAAAAGTTAGCT--------TTCGAATTTTATTCTAGTCTTGAAATTATGTCGCCaaatatttcataataaaatt-atttaaaattttgttataatgagaataaattaaa--taatatCCTCTACAATTCGATTGTAAAATTTTTTTTG----AAACATTATTTTTAAACCTACCAGGTAGACTG-AACACAA
s caeRem4.Crem_Contig0   2301975  99 -  4500979 ----------------CATATGATGgtgtct-------------tttttctcaaaacaaa--------------------------aaacggtaCAT--------ATAAGCTATTAGATTGTTCATG----------------------------------ATACTCAGTTT--------------------AAG------------TACATTTTTGCTTGAATATTC--------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149418 189 -  1189296 --aaaaact-------------ttggaCTAT-------------TTTTTGCCGAGAAAAA-------------------TGGATCAAATTAgcaaat--------tttagaaattagaGTATTTTCgtaaataag-------------------aaaattaatattcaatttt------ccataCATATACGAAG--TGGtataatttatattttgacaaatacttttttgaaaaactcaacctaatttctaaaattg-------gTCAGCAATATAA
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3833379 218 +  4147112 --CACAACTTCTCAGAGTTTTGTTGGACTCTCGTAGTTTGGTTGTTCTAATCCTTAAGAA----------------------GTCCAGTGTCCAAACACCTCTCACTTCGGTTTTCGGGTTTTTCTGTCAGGCAG--------------------------ATCTGTAGTTTT------CTGGAGATTTCTAGATTCTGAACCGACTGACTTTTTGACTTTAGATTTTCTGCaa---tcaa-ttgattttgttAATTGTGGTTGAGCCTGTAAGACAA
i caePb3.Scfld02_0      I 55 I 43
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-1492.000000
s ce10.chrX              5566546 17 + 17718866 AAAGAAACAGGGGACGG
s caeRem4.Crem_Contig0   2302074 15 -  4500979 --AGATATAGGTGCTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149607  6 -  1189296 --------AAACGA---
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3833597 43 +  4147112 I
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-7660.000000
s ce10.chrX              5566563 55 + 17718866 TAATCGAAAC----TT-GGAAATCCCACTTttttcaaaatggttgaaaactagaactttc
s caeRem4.Crem_Contig0   2302089 29 -  4500979 CAATCATAACAATATTAAATGGTTGTATC-------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149613 17 -  1189296 ------TAACAATTTT-TCCGGTT------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833640 51 +  4147112 TAAT--TAAGGCTGTC-TGCGGTTCTagttttttc------gctgaaaaatctaattttt
i caePb3.Scfld02_0      I 43 I 98
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-6446.000000
s ce10.chrX              5566618 98 + 17718866 ggcaaatatcggttttttaattttttgatatttcggttttttccggcatttgtaattgcccaaaatcaaattggcaaacggcacatgc--aatttcagca-----
s caeRem4.Crem_Contig0   2302118 40 -  4500979 ----------------------------------------------GAAAAgcaattctttcaaa-------------------atttcagttttcatatcAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149630 57 -  1189296 -------Atcgtttttctatt---------------ctcacTCAGTGAACTGGAATTGAATAATA-------------------ATCT--AGTCTCAagt-----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3833691 98 +  4147112 I
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-7821.000000
s ce10.chrX              5566716 76 + 17718866 attttggttgtttccacaaacgccaaaattaccgaaaattttataaaccagcaattgctaaaatttccagaatatt-----
s caeRem4.Crem_Contig0   2302158 42 -  4500979 ------Aatctattt------------------gaaa-----ataaaaaacc-----ttACAAGTTCTACAATATC-----
i caeRem4.Crem_Contig0  C 0 I 69
s caeSp111.Scaffold626    149687 50 -  1189296 ------attgttttc--------------tttcgaaa-----aaaaacagaca----CACAAAAAGCATTGAGATCA--GT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833789 61 +  4147112 actccgatttttttttcaa----------tttcgaaa-----ataccTGGAC-----Caataatagttttgaaaataacgt
i caePb3.Scfld02_0      I 98 C 0
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I

a score=-3350.000000
s ce10.chrX              5566792 95 + 17718866 gaaaactagaagtttccgaaaaagcttaaaatttGGCATACATGCGCCCACCCCCAATACCGTCCACCGGGTAGGTCCAAAATAAATGTTGGTCT
s caeSp111.Scaffold626    149737 48 -  1189296 CACG-----------CCAAACAAT-------TTTGATAGACTTA--------TCCTGTGTCTTC---------------------ACATCCGCTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833850 51 +  4147112 CACAGc--------cacaaaaaat------gcttgatAGACTCA--------TCCAGTGTCCTC---------------------ACTTCCGCC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   747460 361 +   823664 I
e cb4.chrX              11393804 1508 + 21540570 I
e caeRem4.Crem_Contig0   2302200 69 -  4500979 I

a score=-3561.000000
s ce10.chrX              5566887 29 + 17718866 AAAAAGTTTTTTCTCAATGATAAAATAGA----
s cb4.chrX              11395312 31 + 21540570 aaggaatttttttgc--caTCCACTTAGAAAAA
i cb4.chrX              I 1508 C 0
s caeSp111.Scaffold626    149785 11 -  1189296 ------------------AGCAAGTTAGA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833901  7 +  4147112 ----------------------AGTTAGC----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   747460 361 +   823664 I
e caeRem4.Crem_Contig0   2302200 69 -  4500979 I

a score=13384.000000
s ce10.chrX              5566916 43 + 17718866 TTTATTTCCCGCTA------------GGCGTGTAAATTGC------ACTTCATGATCTGTC
s cb4.chrX              11395343 42 + 21540570 -------------------GTTAGTCCACACTCGAATTGCTCTCTTACTCCATGATGTGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2302269 60 -  4500979 TTTTTGTTCCGCTTACCAAGTTAG-CTGCACTCCAATTGTTCTCTTACTTCATGATGTGTC
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold626    149796 35 -  1189296 --------------------------TGCACTTCAATTGGTCTCTTACTCCATGATGTGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833908 35 +  4147112 --------------------------TGCACTTCAATTGTTCTCTTACTTCATGATGTGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   747460 361 +   823664 I

a score=494933.000000
s ce10.chrX              5566959 853 + 17718866  
s cb4.chrX              11395385 839 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2302329 800 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    149831 814 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3833943 827 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   747821 781 +   823664  
i caeJap4.Scaffold18194 I 361 I 43

a score=-3370.000000
s ce10.chrX              5567812 1 + 17718866 T---------
s cb4.chrX              11396224 6 + 21540570 T----ACTAT
i cb4.chrX              C 0 I 69
s caeRem4.Crem_Contig0   2303129 1 -  4500979 t---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    150645 1 -  1189296 t---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3834770 5 +  4147112 tttct-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748602 43 +   823664 I

a score=-6002.000000
s ce10.chrX              5567813 32 + 17718866 CCCTCTAATTTTAAATGTTAACCCGAA---------------ATA--TC
s caeRem4.Crem_Contig0   2303130 28 -  4500979 -----------------tcatttcaaatccGCACACTT----CTATTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    150646 31 -  1189296 --------tccaatatATCCTCTCGAAA----AAACCC----TTA--TG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3834775 42 +  4147112 -----caatCCAAAATCTTATTTGCGGGTGTTACACCCGCTTCTA--TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748602 43 +   823664 I
e cb4.chrX              11396230 69 + 21540570 I

a score=-5173.000000
s ce10.chrX              5567845 20 + 17718866 C---ATTTTGACACTCCACTGAA
s caeRem4.Crem_Contig0   2303158 23 -  4500979 CAAGACCGTGGCGGGccacaaaa
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626    150677 22 -  1189296 C-CAACGTCGAAAAGCTAAGGAA
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3834817 23 +  4147112 CGAAACGTCAAAAAGCTCAAGAA
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18194   748645 20 +   823664 -tatttttccactACCCCTTG--
i caeJap4.Scaffold18194 I 43 C 0
e cb4.chrX              11396230 69 + 21540570 I

a score=33336.000000
s ce10.chrX              5567865 90 + 17718866 TCAAGTGG--TAATTTTTCAACGGTA------AGTGGTCGGCATTAATCACTGAGTAAGAGAGTGCCCACAAT--------AAATGC-------GGGCTACA-AATGAAAAATG
s cb4.chrX              11396299 94 + 21540570 TCAAATGGTTTAATTTTTCACCGGCG------AGTGGAAACCATTAATC--------AG-----CCCCGCGTTTGGGAAGTGAGTGCTTTGGTAGAGCAAGg-agtgaaaaatg
i cb4.chrX              I 69 C 0
s caeRem4.Crem_Contig0   2303191 90 -  4500979 TTGAATGG--TGATTTTTCACCGGTA------AGTGGTTGACATTAATCACAACG-AAA-----GCCCACAAT---AAAGTGAATGC------AGGGAAACg-agtgaaaaatg
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626    150703 93 -  1189296 ATGAATGg--taatttttcaccggta------agTGGTTGGCATTAATCACAGAGCAAGA----GAGCTCGGT---ATAGTGAATGT------GCAGAAgccaaatgaaaaatg
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3834844 91 +  4147112 ATGAATGG--TAATTTTTCACCGGTA------AGTGGTTGACATCAATCACGTCGCAAG-----GCCCACAAT---AAACTGAATGC------AGGGAAACC-AGTGAAAAATg
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18194   748665 84 +   823664 CCAAACGT----ATTTTTGGAAGGTGGGGCCTAGCGGTTTCGATTAATC---------------ACCTACCAC---GAAATGAATGG-------GATAAACC-AGTGAAAAATG
i caeJap4.Scaffold18194 C 0 I 2552

a score=43738.000000
s ce10.chrX              5567955 346 + 17718866 TGATT--T---CACAAGGAAT-ATTGTTTC------GTAGAGAGCAAGAAAACATGGGTAACATTAAATAAATATTGCATATCTTG--AACGACAACCTGGAAAA--CTGGACAACAAAAAAATAATAAT-AAAATCCTAAAATGC--------ATTGCTCATTCATTCAACCTTT--TAAACAACTTCCGTCA--TTTA------------AAAATGATGGTCTCAA-AGTGAGAATTCGTTTCGTAAATGCATATTTGTGTGTGTTTTTTTTGTTTTTCACAAAC---CACTTCCGTTTC--ATTTTACTATGTCACTATTTTTGTTGTTTTTGACGCGCGGCGCTCAAGAACGCACTTGTTGTGCAAT-GTGATAAA------------CTTCAGAAAACCAA----
s cb4.chrX              11396393 336 + 21540570 ggattcATGGCGAGAAGTAGGTTTTGTGTTCACAAGAGTTAAAGCTGGAAAAca-----aacattcagaaaacaatgaaaacctga--aaaggaAACGGCAAGAA-----GG----AGGATAATAATAGTCTTCTCTTGAAAATGTATAACTCAATTGC----TCACTCAACCTTTTCCGAA--ATTCACGTCA--TATG------------------TTGG-------GATGAGAATCCGTGATGGGACT-CTTCttttcgtgtgttttgtttttttattcctaactcacacttccatttttatttttactttgttcttatttttgttgtttttgacgCGT---------GCGCGTACTTGTTATGCAAGAAGACGATA---------------TTGACAAGCgatcaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2303281 315 -  4500979 ggattttc----aaaaataga-ttcGTGtt-------------------------------------agaaacaatgaaaacctGAATAAAAACAACAGAGGAAATACTCAG----AAAACAACATGAGT-TTGTGTTGGAAATGC--------ATTGC----TCATTCAACCTTT--CATT--ATTCCAGTCA--TATA------------------TTGGATTCAA-AGTGAGAATCCGTGATGgcatc-ttttttcttgtgtatttctgttttttttact-------cacttccgcttttatttttactctgtgcatatttttgttgtttttgacgCGCAAAG--AGAGTACGCACTTGTTATGCAAT-AGAGGATACAAAGAGATGTTCTTCTGACAAccaatcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    150796 304 -  1189296 ggtttatt---ccaaaataaa-taaattct-------------------------------------gaaaacaaaaccaattgaaatataaaaaatggaaacaa--ttgtg----aaaacaaaaacagt-ttatCTTGTAAATGC--------ATTGC----TCATTCAACCTTT--CAAT---TCAACGTCACTTATG----AAAGTCGGATGAATTCGAGTATAA------GAATCCGTGATGAA-------CTTTCAATATGTCtgtgttttttctaact------cacttccgcttttatttttactttgtgcatatttttgttgtttttgacgCGC---------G--CGTACTTGTGATGCAAT-GGAGAATA--CAAAGATGTTCTTCTGACAACCAA----
i caeSp111.Scaffold626  C 0 I 369
s caePb3.Scfld02_0       3834935 305 +  4147112 ggtttatt---caaaaataga-tttgtgtt-------------------------------------gaaaac-------actgga----aaacaatgtgaaaaa--ttgga----aaaacaataatagT-TTATGTTGAAAAAGC--------ATTGCTCATTCATTCAACCTTC--CA-------AAAGTCACCTATGCAAcaaatttgggaaatttcgGATTCAGAAGGGTGAATCCGTGATGAA-------CTTCTCTTGtgtatttatgttttttaacT------CACTTCCTCTTCTATTCTTACTTTGTGGAtatatttgttgtttttaacGCGC---------GCACGCACTTGTGATGCAAT-AGAGAATT--CAAAGATGTTCTTCTGACaaccaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I

a score=-533.000000
s ce10.chrX              5568301 15 + 17718866 --AGATAAAGCAAAAAA
s cb4.chrX              11396729  4 + 21540570 --aaaa-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2303596 15 -  4500979 --aaataaagcaaaTAA
i caeRem4.Crem_Contig0  C 0 I 388
s caePb3.Scfld02_0       3835240 17 +  4147112 tcaaaaatggaaaaacg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeSp111.Scaffold626    151100 369 -  1189296 I

a score=-1093.000000
s ce10.chrX              5568316 13 + 17718866 -AAAAAGATGTTCT
s cb4.chrX              11396733  8 + 21540570 tggacgaC------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3835257 13 +  4147112 -gaaatagtGTTTT
i caePb3.Scfld02_0      C 0 I 706
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeSp111.Scaffold626    151100 369 -  1189296 I
e caeRem4.Crem_Contig0   2303611 388 -  4500979 I

a score=-1449.000000
s ce10.chrX              5568329 244 + 17718866 AAGGGTGTATTGGGAGTTGGGGATATCATAAACATGCCATTTACCTCAAGTAGAAATTTACAAAAAAAATCAGTTGCCATTTGTTAATGAGTATTTTCGGTTCTCATGGACTTCGA------TTTTTTTTAACATAAAAAATTGGTTTTAAAAAAATTGG---TTAATTACCAATTATAATTACTAAAAAATCTATAATTTTGTACAAGTTTTTTTGTGGATTTTTCAACTTTGCAAGTTTTTTTGCCGACTT
s cb4.chrX              11396741 169 + 21540570 -------TAGTGCGAAATGggaat-----------------------------aaattt----tgaaaatgggaagcaatttgaaacttttaattt---gTTTCCATGGGACCggaatatatttttctttca--------------ttcgGGAAAATTATACCGTATCTATAAAATATAACTCC-------------ACTTCATCCAAAATATTCAA--------TCCACTTTA------TTTTCGATGAATT
i cb4.chrX              C 0 I 161
e caePb3.Scfld02_0       3835270 706 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeSp111.Scaffold626    151100 369 -  1189296 I
e caeRem4.Crem_Contig0   2303611 388 -  4500979 I

a score=0.000000
s ce10.chrX              5568573 173 + 17718866 TTGTTAGTTTTCTGTTGTAGCCCAATTTTTACTGGCTCTTCTCAGTATTTTTTTTGTAGATGTATTTTAAAACATCATAAAAAAGAATATAGAAAAACCAGTTAAATTCATCGGAACACTCCAAACGCCGACAGGACCAAATAAGTTAGTAAGGAAGTTAACCGAAACTTTCA
e caePb3.Scfld02_0       3835270 706 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11396910 161 + 21540570 I
e caeSp111.Scaffold626    151100 369 -  1189296 I
e caeRem4.Crem_Contig0   2303611 388 -  4500979 I

a score=-576.000000
s ce10.chrX              5568746 706 + 17718866  
s cb4.chrX              11397071 524 + 21540570  
i cb4.chrX              I 161 C 0
e caePb3.Scfld02_0       3835270 706 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeSp111.Scaffold626    151100 369 -  1189296 I
e caeRem4.Crem_Contig0   2303611 388 -  4500979 I

a score=883.000000
s ce10.chrX              5569452 13 + 17718866 AAGAAAAGCGTAC
s caeRem4.Crem_Contig0   2303999 13 -  4500979 aaaaaaagctTAC
i caeRem4.Crem_Contig0  I 388 C 0
e caePb3.Scfld02_0       3835270 706 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397595  0 + 21540570 C
e caeSp111.Scaffold626    151100 369 -  1189296 I

a score=546.000000
s ce10.chrX              5569465 1 + 17718866 A
s cb4.chrX              11397595 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2304012 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3835976 1 +  4147112 A
i caePb3.Scfld02_0      I 706 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeSp111.Scaffold626    151100 369 -  1189296 I

a score=97278.000000
s ce10.chrX              5569466 280 + 17718866 ------TGTTTCACA--AGTCACTTCATCTTTTTGATGGAATAATTGGAATGTAATAGCAGGTTG--------CAAATA-------CCCGTACTTGCTTTC---CGGTAAAAAGTGGTTCGTTCG-CTTTGAAACATAACTTT-------------TTTGCAG--AAGAACTCTTTCTGAACTTCTCTTCTTTTTGGTTCTTC---AGTTCATAAAGTA----GTCTTAAATATTCTTTGGGCCGTCTTT--TTTCCTGAGAAGTTCGCCAGGGAGCCGTGAATTATTGCTCCATCGCTTT---CAGTTTATTGTTTTACCACAAGACACTGCT
s cb4.chrX              11397596 291 + 21540570 AGT-----TGTAACAAGAGCCCGTTTATCTTATTGATGGAATAATTGGAATGTAGTAGTCGGTTCCATTCCAACAAAAAGCGGATTCCCgtacttttcttcttttttggaaaagt-acccgttct-ttttgaaacatcaaTCT-------------CCTCTAG--GAAAA-CTCTTCAGAAGtctcctgatttttttttcttgcttagTTCCACTTTTTCATTGCAGCAAGGATTCCTTGCATT--CCTT-----CTTTTGAG-----------AGCTGTGAATTATTGCCTCtttttttGG--CAGTTTATTGTTTTACCACGGGACACTGTT
i cb4.chrX              C 0 I 728
s caeRem4.Crem_Contig0   2304013 272 -  4500979 AGTCAGTATGTAACA--AGTCCGTTTATCTTTTTGATGGAATAATTGGAATGTAATAGCAGGTTC--------CAAGTGCTGGATTCCCGTACATTTCTAC---CCGGAAAAAGT-ACTCGTTCC-TTTTGAAACATCAATCT------------GTGTGTAG--CAGAACCTCTTCAGAagtc-------tttttgttctt------ttccaa---------GCATTCCGGATTTCTTGAACC--CTTT-----TTTGTGAACTCCTTCATGCAGCCGTGAATTATTGCTCCTTTCCAC----CAGTTTATTGTTTTACCACGCGACACAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    151469 293 -  1189296 ------TATGTAACA--AGTCCGTTTATCTTTCTGATGGAATAATTGGAATGTAATAGCAGGTTT--------CAGATGCCGGATTCCCGTACTTTTTCCGGCA----AAAAAGT-ACTCGTTCC-TTTTGAAACATCAATCTCggtatgtgtgtgtgtgcagAGTGAAACCTCTTCAGAAGTCgcctaaatttttttt-------ggctcGGGTGT------ATTTAGAGAATGTCTTGAACCGCTCTT-----TTTGTGAACTTCTTCACAGAGCCGTGAATTATTGCTCCTTTTTTGTG-CCAGTTTATTGTTTTACCACGCGACACAGCT
i caeSp111.Scaffold626  I 369 C 0
s caePb3.Scfld02_0       3835977 289 +  4147112 ------TATGTAACA--AGTCCGTTTATCTTTCTGATGGAATAAGTGGAATGTAATAGCAGGTTC--------AAGATGCCGGATTCCCGTACTTTTTTCCGGA--GGAAAAAGT-ACTCgttcctttttgaaacatcaatcTC---------ATGTGTGCAG-TCGGAACCTCTTCAAAAGtctcctgaatttttttg-------agtccgGA---------GTTTTCAGGATTCCTTGAACCCTCCTTCCTTCTTTGTGAACTTCTTCAGAAAGCCGTGAATTATTGCTCCCTTCTACTGCCCAGTTTATTGTTTTACCACGCGACACAGCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I

a score=-1932.000000
s ce10.chrX              5569746 34 + 17718866 GTTTGGTAGAACACTATTTAA---------CGCCTTTATTGAT
s caeRem4.Crem_Contig0   2304285 21 -  4500979 TCTCGAAAGGGCATAAGTCAT----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    151762 13 -  1189296 TTTCCAAAGGGCA------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3836266 43 +  4147112 TTTGGAAAGGGCATAAGTCATTATTTTACGCTACTATATCGAT
i caePb3.Scfld02_0      C 0 I 343
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I

a score=-8479.000000
s ce10.chrX              5569780 217 + 17718866 TTTTTTTAAATTAAAGGTGGAGTATCGTCAGTGTGGAAAATTAAAAAACATACAGTGCTAAAATGTTCAATTATTCGAGTAAAACACGCAGCAATGCTAGAAACTTGTCAACTGATCTATATTTTTGGA--GAATTTTGCAATTCATCAAATCTTTGACGTTAAAAGTTTTGTAAAATCTGAAATTTTTTAGATTGTTTAAATAAATTACAATAAATGT
s caeRem4.Crem_Contig0   2304306 104 -  4500979 ----------------------TATTTTAGTCTTCCAATGCTATCGATC------------AGCgtttgtttatttta------------------ccaaaa------------------gtttttgagttgaagttttc------------------------------gaaagaaaatagttttttttttcatg---aaataaaa------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    151775 137 -  1189296 ------TAAGTC--------ATTATTCTCCACCCGGAACACTACCGATC------------AGTGTTGGttcatttt--------------------tggaa------------------gttcctggattcatattttcaat----------tttga--ttcaGAGCCaggatgaaaacaaaattatccagtttg---aaaaaaatttc---gaatgt
i caeSp111.Scaffold626  C 0 I 62
e caePb3.Scfld02_0       3836309 343 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I

a score=-1374.000000
s ce10.chrX              5569997 110 + 17718866 ACTTAGACGTCTTCACTGACAATGCTCCGTCTTTAATAATTTTCCTGATTCATGTAAACACGAAAGAAGAAACACTTCCGAAGTCAGTGCCAAACAGTGACGAGTTTTTT
s caeRem4.Crem_Contig0   2304410  49 -  4500979 -------------------------------------aagttttcaaaatcgCATTAGCAATAAA-CTGAAACTCTC---------------AACA--------TTTCTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3836309 343 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeSp111.Scaffold626    151912  62 -  1189296 I

a score=-4306.000000
s ce10.chrX              5570107 245 + 17718866 GCTCTCAATGCGTT-------GCCTAAAGTGACAATTTGTAAACTAATTCC-GCTAGTCCGCATAAGTTTCCTACATTGTAAATAAAATAGAAAACACATGTCAAGTTCTTGTTTAATTTTTTTCTTTGTGCCGAATCACATAGTTTCACTTTTTGTAAAAAATTTAAACTCGGAAAATGATTAAATTTATGTACCGTTTTTTATACAACGAGCCAAAGAAGCATAAACTTTTAGATAATTAAACAAAAATTT
s caeRem4.Crem_Contig0   2304459 184 -  4500979 GCTGCCTAATATTTTGTCAAAGTTTATAATATAAATTTCTTCACTAATTCC-TTGAGTCCACG-AAATCGCCcacaaag-----aaaatgagaagcaTG--------------CTactattctttttgaaaatgga------aatacttttttcaatgaaaaatcaaaa---agaagtcGTTTAATTCAATTTC---------------------------------------GAAGTCTTCAAccaaaattt
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold626    151974 148 -  1189296 ---------------------GTTTATAATGCGCCTCTGTAAACTAATGCCAATGGG--CAAA-AAGTCACATGGATTG-----GAAATAAGAAACA------------------------------------GAA------AGTTTCCATTCTAAGACAGAAGAAAGA---TGAAACAACTCAATTCTATTTA-----------------------------ACAAAC--TGGAATTCTgtagaaaacattt
i caeSp111.Scaffold626  I 62 C 0
e caePb3.Scfld02_0       3836309 343 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I

a score=-289.000000
s ce10.chrX              5570352 34 + 17718866 TTTTCTCGTTTTCATGTCAAATTTTTTTCGCCGG
s caeSp111.Scaffold626    152122 18 -  1189296 ttttct--ttctgatgacga--------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3836309 343 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeRem4.Crem_Contig0   2304643 21 -  4500979 I

a score=331.000000
s ce10.chrX              5570386 8 + 17718866 ATAACGTT
s caeRem4.Crem_Contig0   2304664 8 -  4500979 atcacttt
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold626    152140 2 -  1189296 ------tt
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3836309 343 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I

a score=24259.000000
s ce10.chrX              5570394 214 + 17718866 TTTCTAGACTTGGAAATTGTTTTTTCCGACCCTTTTGTGTATATCT------TTTGTCTTTTGTCCAACTATT-TGAGCAATTTCAAT-----TCTTTTCTCTCTTGCTGCCAAATGTCTCCAAGAGTTCTCCACTCATTTTGGTAACCCAATT-----GTGCAAAACTAGACGGATGGTTCATGTGATT-TAGTCAATTTCCGGTGCATTTTGAACAGACATTTTGAGTTC-------------
s caeRem4.Crem_Contig0   2304672 204 -  4500979 tttccagactttgaaattgttttttccgtttctttt-tgtgtatcttttgtctttcttttct---tAAGTATT-TGAACGATTTGGACGCTCcacatttcagtttcactcAAAACTCTCG----------ACTTCTCATTTCAGTAACTCAATTTTACAATGAACCAC------AATAGTTCAtctaatttcacaaaatttccgGTGCCTT-------GACATTCCATGTCC-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    152142 189 -  1189296 tttccagactttgaaattgttttttccgtttctttt-cgtgtgtct------tttctcttca---caaGTATT-TGAACGATTTTAAAC----TCTTCTTTGTTCTActtgaaactattt------------ttctcattttggtAACCCAATT-----GTTCACCA------------TTCATCCAATTTGAGATAATTTCCGGCGC------------TATTTCAAGTAGGAATAGAAAGTTC
i caeSp111.Scaffold626  C 0 I 47
s caePb3.Scfld02_0       3836652 184 +  4147112 tttccagacttggaaattgttttttccgtCTCTTTT-TGTGTATCT------TTGTCTTTC--------TGTTCCGAACGATTTCAACCCT--TCTCtttagtttcatttcaaacactttctcttc-ttgaCTTCTCATTTTGGTAACCCAATT-----GTTAACCA------------TTCG--------AGGATAATTTCCGGTGC------------AATTCGAAGTGCATCTTTA------
i caePb3.Scfld02_0      I 343 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I

a score=404.000000
s ce10.chrX              5570608 5 + 17718866 AGTCT
s caeRem4.Crem_Contig0   2304876 5 -  4500979 AGTTT
i caeRem4.Crem_Contig0  C 0 I 74
s caePb3.Scfld02_0       3836836 2 +  4147112 ---TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeSp111.Scaffold626    152331 47 -  1189296 I

a score=739.000000
s ce10.chrX              5570613 33 + 17718866 ATGATGTCAATGTGTTTAGATTCCAATTTTTCT
s caePb3.Scfld02_0       3836838 33 +  4147112 CTGATGTTGAGTTCCTTAGGGTTTCATCTGTCT
i caePb3.Scfld02_0      C 0 I 51
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeSp111.Scaffold626    152331 47 -  1189296 I
e caeRem4.Crem_Contig0   2304881 74 -  4500979 I

a score=0.000000
s ce10.chrX              5570646 390 + 17718866 CCTAACttaaaatttttaattaaattattttGTTGATAATACTTGTGTACATTTTTGCTATTAAGAATAATAATTACAACGTGAATATTAATGCTAAGaaatttagttttaaaataaaatatatatCCAAAAACTGGGTCGAAGCAGTGTCTGTGGCTGTGCGCCAACTGTCTAGTTCGGTGATTGTCCAAAAAATTTTAAATTGCATTAATGATACAATTTCCAAATTCCTATAGATTTCTATAATAATTTTTCAAACTTTCGGATTTTAAATAATAGTTAAATTTGAAAATTGCGGAAATTTTCGTCACTTTCCGAAAGTTTTCCATCACATCGCTTGATGATTCAAAAATAAATAATTTTGAGGTAACCCTCCTACACGGGTTGGCA
e caePb3.Scfld02_0       3836871  51 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeSp111.Scaffold626    152331  47 -  1189296 I
e caeRem4.Crem_Contig0   2304881  74 -  4500979 I

a score=91.000000
s ce10.chrX              5571036 1 + 17718866 A
s caeSp111.Scaffold626    152378 1 -  1189296 A
i caeSp111.Scaffold626  I 47 I 2
e caePb3.Scfld02_0       3836871 51 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11397887 728 + 21540570 I
e caeRem4.Crem_Contig0   2304881 74 -  4500979 I

a score=-11.000000
s ce10.chrX              5571037 4 + 17718866 TTTT-
s cb4.chrX              11398615 4 + 21540570 tttt-
i cb4.chrX              I 728 C 0
s caeSp111.Scaffold626    152381 4 -  1189296 -TTTg
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3836922 4 +  4147112 -tttg
i caePb3.Scfld02_0      I 51 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeRem4.Crem_Contig0   2304881 74 -  4500979 I

a score=87139.000000
s ce10.chrX              5571041 252 + 17718866 TG---AAGAAGAAAAACAAGGAGATTTGAGAA-TGCAAGTT--AGACATTTGAGATCTTAACATAAGCCAGAAATGGGTCCGATTTCCATTTGGAATGTCTTTTTGTGCGCATCCGATGCTCCACATTCCCGCAACCAAA-------ATATGTTTGATCTGAAAGAA--GGA---ATGA---GAGAACATT--GAAC--AAAAAAAGCAATTCAAAAACGA-----C-CGGCTCCTTG------A----TTTCCATTTGC------AACACCAAG-GTCTTAAATGTGTTTTTTTC--TGCT---
s cb4.chrX              11398619 265 + 21540570 tg---agaacagAAAACATAGCGATTTGAGACGGGTGAGTTAGAGACATTTGAGATCCtgaaataagcaaaaaatggGTCCGATTTCCATTCGAAATG-CGTTTTTCCTGTGTGTTACACTA-----------AACCAGAAATGTATATGTGTTTGATCTGGAGGAC--GAAGATTCAAAATGGGAACATTTCGACATCAGAAAAagcaattcaaaaacaaagaagC-ACCCTCATTTTGATATAATGGTTCCCCTTTTT-------------------TCCTGGAtgctccttt---ttctttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2304955 257 -  4500979 tg---acagaaaaaaacatagagATTTGAGAT-GCTGAGTTAGAGACATTTGAGATCCTGACATAAGCCAAAAATGGGTCCGATTTCCATTCGAAATG-cgttttctccgttttctccaCTA--------TGCCACCAGAA------ATATGTTAGATCTGAAGAAG--GAA---TTCAAATtagaacatt--ga----aaaaaaagcaattcaaaaacaa-----c-acCCGCTTCTGTttcta----tttccattttt-----caacacTGAGTGTCTTCTTCaagatgtttt---ttctttc
i caeRem4.Crem_Contig0  I 74 I 95
s caeSp111.Scaffold626    152385 267 -  1189296 tgacaagaaaaaaaaacaaagagattTGAGAT-GGAGAGTTAGAGACATTTGAGATCTTGACATAAGCCAAAAATGGGTCCGATTTCCATTCCAAATG-CGTTTTCTGCGCTTTCGACACTA-------CTCTGACAAGGAA-----ATATGTTtgatctgaaagaa--gaa---ttcgaatgagaacatt--------gaaaaaagcaattcgAAAACGA-----C-TGACGTTTCGGTCTCGA----TTTCCA-TTCCACCAGTAACACTGAGCCTTTTACATGTGATGTTTTCCATGCTTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3836926 270 +  4147112 cg--aacaacaaaaaacaaagagatttGAGAT-GGTGAGTTAGAGACATTTGAGATCTTGACATAAGCCAAAAATGGGTCCGATTTCCATTCCAAATG-CGTTTTCTCCGTTTTCGACGCTAC-----TCTCTGTCAGGAAA-----ATATGTTTGATCTGTAAGAAAGGAA---TTCGAatgagaacatt--------gaaaaaagcaattcaAAAACGA-----CATTCTGTTTCGGTTTTta----cttccattttcatcacttACACTGAG-CTCTAACATGTGTTgtttcacatgttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I

a score=-9795.000000
s ce10.chrX              5571293 61 + 17718866 TTCAGTTTACTTCTACGCTATGTACAAAACCTTTCAAGATTTCCACAAATTGTTGGCGA--------TT-----------------------------------
s cb4.chrX              11398884 60 + 21540570 ------tttcc--cggGGTACCTACAATTGCT------aacaacaaatttcaaaagaga----aagtttt------ttcttcga--------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    152652 88 -  1189296 TTGCGCTTTCCTACCCGACACCTACAATAATT----TAAACGGAAAA----GGAAGtga--------tttgtttcatttttcaaaaaaatctagagTTCTGTGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3837196 98 +  4147112 tttccttttctgccCTTGCACCTATAacagaa----agaatgaaaaaaaacggaagtgaTTCTAggtttcgtttcaattttcaacgaattcaaAA--CCCTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e caeRem4.Crem_Contig0   2305212 95 -  4500979 I

a score=67229.000000
s ce10.chrX              5571354 237 + 17718866 GAATTTTAAATCAGTACATATATATTTCGAATTATTTCACTCGTGTCATGCTGTCCCTCCACGCGTGGAGGTGTAGAAGTG-AATTTTTAATTTCAGTGAGAACATGTTTGAGAA------------TATTTTGCGTGTGTACTGCAATATAAAATAAAAGTAGT----TC----GGTCTGTACAGCGGCTAGGAAACATCAGAGAAAAAGACCAGG------AAACACTCCATTTCGATGATTAGAAT-----------CTAGTATCAATCAGT----
s cb4.chrX              11398944 233 + 21540570 gaattttcaatCAGTTCacataaatttgaaactatTCAATCCACCATGTCATGTGCGTT--------GTGGTG---Atgag-aatttctaatttcagtgAGAACATTTGCGAGAAATACttctttcgttt------tcttctctgCAATATAAAATGAGAGTAGT----TCGTAGGGTTGGTGC-TCT---AGATAACATAGG----GGAAGTGGA---CTCAAAAAGGTCCATTTTGTTGATTAGAAT---------GTGCAGTATCAACCGGT----
i cb4.chrX              C 0 I 469
s caeRem4.Crem_Contig0   2305307 234 -  4500979 GAATTTTAAATCAGTACACAT--ACTTCGCATTATTTTACTAGTGTCGGGCAGTGCTTT--CACTCGGAGGTGT--Aggtg-aatttttaatttcagtgaGAACATTTCCAAGAA---------------------TATTCTCTGCAATATAAAATGAAAGTAGT----TC----GGTCGGTGC-TCGTCAAGAAAAcagcag--aaaaaagtgaaggcCTC--AAAGGTCCATTTTGTTGATTAGAATCCACACGGCGAGGAGTATCAATCGGT----
i caeRem4.Crem_Contig0  I 95 C 0
s caeSp111.Scaffold626    152740 237 -  1189296 GAATTTTAAATCACTTCATAT--ACtttgaattatttcattcGTGTCTTGCGC-GCTCT---ACGCGTAGGTG---agata-aatttttaatttgagtgagaacattttcaagaa------------tat------ttttcactgCAATA-------AAAGTAGTTCGGTC----GGTCGGTGC-TCAACTAGAAAACATCAGGAAAAGGAATGAAGGACTG-AGGTGGTCCATTTTGTTGATTGGGATATACACTCTTCTAAGTATCAATCGGAGA-T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3837294 234 +  4147112 GAATTTTAAATCACTTCACAT--ATTTCGAATTATTTCACTCGTGTCTTGTACTGCCCT---TCGGGGAGGTG---AAACAGAATTTCTGATTTGAGTGAgaacatttttgtgaa------------ta-------taTTCTCTGCAATATAAAATGAGAGTAGT----TC----GGTTGGTGC-TCGACtagaaaacatcagaaaaaaatgcggaGAA----AGGAGGTCCATTTTGTTGATTAGACTGAGCA-----ACGAGTATCATTCAGAGAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I

a score=-5256.000000
s ce10.chrX              5571591 19 + 17718866 TTTAAGT--TCAAATGGGAAG-------
s caeRem4.Crem_Contig0   2305541 26 -  4500979 -TGTAGTAGTTAACCGCGGATG-GGAAG
i caeRem4.Crem_Contig0  C 0 I 382
s caeSp111.Scaffold626    152977 19 -  1189296 ----AGTGAAGAAAGATGGAAGT-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3837528 18 +  4147112 ----TGTCATAAAAAGTGCAGG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I

a score=1174.000000
s ce10.chrX              5571610 11 + 17718866 GCTTGAAATGA
s caeSp111.Scaffold626    152996 11 -  1189296 Gcacaaaatga
i caeSp111.Scaffold626  C 0 I 252
s caePb3.Scfld02_0       3837546 11 +  4147112 ATTCGGAATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=265.000000
s ce10.chrX              5571621 18 + 17718866 TGA----AGCCTAGCAGGTGAT
s caePb3.Scfld02_0       3837557 22 +  4147112 GAACCAGAAACTGGCAGGtaat
i caePb3.Scfld02_0      C 0 I 120
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=0.000000
s ce10.chrX              5571639 153 + 17718866 TCTCGGTGGTTATTATGAATGAACACTGATGGAAGAGAGAAGAAGCCCAACTACAGCTTAAGCTCATTTCCTGAGGACGCACTTTTTTAGATTCATATCAAATATTGTTTAGTATGATTAATTTTTATCCAACGATTGCGCTTGGTTTGGACC
e caePb3.Scfld02_0       3837579 120 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=871.000000
s ce10.chrX              5571792 48 + 17718866 ATTATTTAAAAGAAATGCAT------AAATTTCAATAATTTCGGACAGCACATT
s caePb3.Scfld02_0       3837699 54 +  4147112 agtattaaaaaaaaagaaatcaaataaaatttcaatgaatcaaGCGAGGAAACC
i caePb3.Scfld02_0      I 120 I 90
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=0.000000
s ce10.chrX              5571840 116 + 17718866 GTGACTCTTTAATTCCATGAAAAAAGGACCAGAGGCTGTTTACTATTTGAGGACGGCTGGCTCCAAAACGGCTGCTTTTTGACCATCTGGTGCAGCTCAATATTCCTAATATAGGA
e caePb3.Scfld02_0       3837753  90 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=-68.000000
s ce10.chrX              5571956 222 + 17718866 TTTGTTTTAAGAGTCCTAATTGCTAGAATT-TTGAAAACTTATTGTCACT--TGCGTGGTATATGT-ATTCCTAAAACGTTTTAAAACAAAAAACTCAATTTTATTCAACACTTGAAATTTGTTTTTTGCTGCGCCCGAAG-TACCAACATTTTGTTAAATTTATAAAAATCAAAAGGTGAATTCTTTTTGTATTTTTGGTTCAGAAATAATAATTTGAGTACTTTA
s caePb3.Scfld02_0       3837843 190 +  4147112 tttgttttcacaatGTTAATGGAAAAAGTTATCGACAAGTTTAAGGCTCTCATTCACAGTTCCtgtgattgaaaaaacattc--agacaACACGCTCAAATGAATTTTACCCC--------ACTTCCCACAGAACCATATGCTACCATTAGCTTGGCA---------------------------TTTCCTTATTTTAGATTCAAATTCATTAATGGGGTTGTTCCA
i caePb3.Scfld02_0      I 90 I 66
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=0.000000
s ce10.chrX              5572178 99 + 17718866 AATTGAAAATAGTATGTATTACGTAAAACAAGTATTTAGTAGTTTATTATTATAAAGATTAATATTTTCCAGCTTTTTAGGTACAGCTTCTACACAATT
e caePb3.Scfld02_0       3838033 66 +  4147112 I
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=-293.000000
s ce10.chrX              5572277 90 + 17718866 ACTTATTATACTTTTTTCATCATTTCTAGGCTTAGAAAAATCATTTGATACATTTTTGGCTACAGTCTACACAAATACTATCAAAAGTTT
s caePb3.Scfld02_0       3838099 54 +  4147112 actttttgttgtttctttattctc-----------------cattcgaaaaaacttcgg----ggtcaacaaaaa---------------
i caePb3.Scfld02_0      I 66 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I
e caeRem4.Crem_Contig0   2305567 382 -  4500979 I

a score=3080.000000
s ce10.chrX              5572367 54 + 17718866 ATGTGCTCCAAAAAA----ATTTGCAAATCTAGAAATCCTCGTTTTGATCTGCTTACT
s caeRem4.Crem_Contig0   2305949 56 -  4500979 ATGGGGTCAACAAAAAGTCATCGAAAAGTCTAGATGTTTCCGTTCTGATCTGCTTG--
i caeRem4.Crem_Contig0  I 382 C 0
s caePb3.Scfld02_0       3838153 38 +  4147112 ----------------gtgatcaaaaagTCTAGATGTTTCCGTTCTGATTTCCT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I
e caeSp111.Scaffold626    153007 252 -  1189296 I

a score=1371.000000
s ce10.chrX              5572421 178 + 17718866 TCATTTATTCCACATTGCTCATGAACTCCCAAAGGATCATATCGTTTTGTTTATTTTTTACTTTCAAAACAGATGATGTT-CCTCCTCAAATTTTCCCCCAAAAATAGGCGTTCC-TCACTTTTCCTACGCGTTTTTTTCTCAAAAAAGGCCACC--CACCTCGCGTCTCAAACGACAAAAT
s caeRem4.Crem_Contig0   2306005 128 -  4500979 --------------TCAATCTCAAACTCCCTGAGGATCTTcccttt-tgtt--tt----tcatctcaaaacgATGATCTT-----------TTCGT------GGCTAAGTGTTCC-AAAAGCGGTGTACT----TTTTCTTT-----ACCCCACCGCCACCTCGC----CGCGCGAGAAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    153259 131 -  1189296 ttatttctttc---tcaatCTTTAACTCCCCAAGGAccatttt----tgtg--ttttcatcGTC-AAAACCGATTATGTTCTCTCCTCTCATTCAT-------ACTAAGTGTTCC-GAACGCCGTCTACG----TTTTTCTC------CGCCGAC-----------------------AACG
i caeSp111.Scaffold626  I 252 C 0
s caePb3.Scfld02_0       3838191 147 +  4147112 -CCCATACTCC---CAAATTTCAAACTCCCAGAGGATCATTCTTTGCTGTT--TTGTCTTCTTCGAAAACCGATGATGTT-----CCTTCATTTTT-------GCTAAGTGTTCCAAAAAGGAGCATCCG----TTTTTCTC-----GCGCCACCTCCATTT--------GCACGAGTAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I
e cb4.chrX              11399177 469 + 21540570 I

a score=7573.000000
s ce10.chrX              5572599 12 + 17718866 AGTGAGAGATG----C
s cb4.chrX              11399646 16 + 21540570 AGTGAGAAATGCCGCC
i cb4.chrX              I 469 C 0
s caeRem4.Crem_Contig0   2306133 12 -  4500979 AGTGAGAAATG----C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    153390 12 -  1189296 AGTGAGAGACG----C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3838338 12 +  4147112 AGTGAGAGATG----T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   748749 2552 +   823664 I

a score=247298.000000
s ce10.chrX              5572611 281 + 17718866 GTCGCCGCC--GAAAAATTCAACAAATTAATTAATTGGTCCGGGAGAGATGAGGAG-GCT------------CAAGTCAGTCAACGGCGCGCGCCCCGAAAAACAGCTTCCTATACATCCGTTCTTGTC--TTTGCGGC-AATGCACCAATTGCTCTCG-GGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCTC--AGCGCTAAGAAACGTGTGCTCGGGCGCGCGAGAGTGTGACACAGCGCA-GGCGGAG---CCTCAATAACTCATCTTTGGACACCTTCTGTC--CTACAACT------CC-CG
s cb4.chrX              11399662 285 + 21540570 GCGGC------AGAAAATTCAACAAGTTAATTAATTAGTCGGAG-----TGAGAGG-CCCTATGTCCCT---CTAGTCAGTCAACTG------CCCCGAAAAACAGCTTCCTATACATCCGTTCTTGTCTTTTTGCGGCAAAAGCGCCAATTGCTTTCG-GGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCTC--AGCGCTAAGAAACGTGTGCT----CGCGCGAGAGTGTCGCACAGCGCAGGGCGGAGAGGCCTCAATAACTCATCTTTAGACACCTTCTGTT--CAACAACTCCCACCCCACG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2306145 271 -  4500979 GTCGc------cgaaaattcaacaaattaaTTAATTGGACCGAG-----TGAGAGG-CTC----CCCGT---CGAGTCAGTCAACTG------CCCCGAAAAACAGCTTCCTATACATCCGTTCTTGTC--TTTGAGGCAAACGCGCCAATTGCTCTCG-GGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCTT--AGCGCTAAGAAACGTGTGCT----CGCGCGAGTGTG--GCACAGCGCA-GGCGGAGAGGCCTCAATAACTCATCTTTAGACACCTTCTGTC--CAACAACT-----CCCGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    153402 286 -  1189296 GTCGCCCTCGGCgaaaattcaacaaattaATTAATTGGGCCGAG-----TGAAGGGACTC-----CCGTCCCCGAGTCAGTCAACTG----CCCCCCGAAAAACAGCTTCCTATACATCCGTTCTTGTC-TTTTGCGGC-AATGCGCCAATTGCTCTCG-GGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCCCTTAGCGCTAAGAAACGTGTGCT----CGCGCGAGTGTGTGGCACAGCGCA-GGCAAAGAGACCTCAATAACTCATCTTTAGACACCTTCTGTT-GCTGCATCT------CCGCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3838350 279 +  4147112 GTCGCCCGCCgcgaaaattcaacaaattaaTTAATTGGGGCAAG-----TGAAAGG-CTC-----CCGT---CGAGTCAGTCAACTG----CCCCCCGAAAAACAGCTTCCTATACATCCGTTCTTGTCTTTTTGCGGCAAAAGCGCCAATTGCTCTCG-GGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCTC--AGCGCTAAGAAACGTGTGCT----CGCACGA--GTGTCGCACAGCGTAGGGCGGAGAGGCCTCAATAACTCATCTTTAGACACCTTCTGTC--CAACAACT------CC-CG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   751301 268 +   823664 GTTCCCTCT--CGATAATTCAACAAATTAATTAATTGGGCAGAG-----T-AAACG-CGA------------CGGGTCAATCAACTG------CTCCGAAAAACAGCTTCACATACATCCGTTCTTGTCTCTTTGCGGC-AACGCGCCAATTGCTCTCGTGGGTGCGAATTGAGCCATTAGCCGATTCGGCTCCACCCCTC--AGCGCTAAGAAACGTGTGCT----CGTGAGA----GTCTTGCAACGCA--GTGGAGAGACTTAAATCACTCATCTTTAGATATATTCTGTCTTTGGCGGTT------CC-TG
i caeJap4.Scaffold18194 I 2552 I 18

a score=-6587.000000
s ce10.chrX              5572892 19 + 17718866 CTAA---------CTACCATCTCC-GTAG
s cb4.chrX              11399947 27 + 21540570 CAGAGAGTATTGCACATCCTAGGA--TAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2306416 22 -  4500979 CATA------CGCCTACCATAATA-GTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    153688 25 -  1189296 CGTT---TCACGCCTACCATCTAG-GATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3838629 23 +  4147112 CATC------CGCACATCATCTAGCAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   751569 18 +   823664 I

a score=213970.000000
s ce10.chrX              5572911 473 + 17718866  
s cb4.chrX              11399974 452 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2306438 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    153713 423 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3838652 427 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   751587 508 +   823664  
i caeJap4.Scaffold18194 I 18 I 93

a score=-11521.000000
s ce10.chrX              5573384 75 + 17718866 CAAATTATATACGAATTCCGATCTGCAGTAACATTTGTT------------------TGAACAGTCAAAAGAAAACAAAATGTTTAGTTCATA
s cb4.chrX              11400426 67 + 21540570 CAAGT----------------------TTATTATGTGTTGATTAGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTG---TAGCTCTTCT-
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   2306885 54 -  4500979 CCAAT----------------------GTTCCACTTGTC-----GTTTGAAGAC--------AGCAAAACGAAAACAGA---TTGAGTTTAT-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    154136 53 -  1189296 CCAA-----------------------GCCTTATTCATT--------------C---TCAAGccacaaaaaacaaaaaacgtttgAGTTCATA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839079 53 +  4147112 TGTa-----------------------gtatttttcatt--------------ccagtCTAAacgtaaaaagaaaaata---ttgagttcaTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752095 93 +   823664 I

a score=546.000000
s ce10.chrX              5573459 1 + 17718866 T
s caeSp111.Scaffold626    154189 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839132 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   752188 1 +   823664 T
i caeJap4.Scaffold18194 I 93 C 0
e cb4.chrX              11400493 47 + 21540570 I
e caeRem4.Crem_Contig0   2306939 2 -  4500979 I

a score=-5946.000000
s ce10.chrX              5573460 51 + 17718866 AATGTTGATTAAGCC------------------------AA--TTTTTGAA-GACATCCCTTCC-------CTTCGTAATTGCTT
s caeRem4.Crem_Contig0   2306941 76 -  4500979 GTTGTTGATTAGCTT---CTTAGAAGcctgaaattctgtaactttcttgAGCAGTACTCGTCTTG------CCGCTTAATTGCTT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    154190 81 -  1189296 TTTGTTGATGAGGCA---CTAAGACGCTCAAAAATCCGTAACTTTCTTGTG-GGCACTCGTCTCGCTTTCTCCATATAATTGCAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839134 65 +  4147112 CTTGCTGATTAGCCCTGTCTAAGACGGT---------GTAACTTTTTTGTG-GTCATCCCTGTCG---------TATAATTGC-T
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18194   752189 36 +   823664 AGTGTCGATTGAGTGTGCCTC----------------------TACTTGTA-ATTGCTC--------------------------
i caeJap4.Scaffold18194 C 0 I 92
e cb4.chrX              11400493 47 + 21540570 I

a score=-1556.000000
s ce10.chrX              5573511 10 + 17718866 ATTTTGAG---------------AA
s caeRem4.Crem_Contig0   2307017 23 -  4500979 GTTTAGAGCATCTAGAATTTCAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    154271  8 -  1189296 GTTTTGGG-----------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839199  8 +  4147112 AGTTTGAG-----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752225 92 +   823664 I
e cb4.chrX              11400493 47 + 21540570 I

a score=-13228.000000
s ce10.chrX              5573521 60 + 17718866 -CTTTTGG--GAAAACAAA-------------------------ATCTAACCAGTCATTACCCATCCA-----AATTGGCAGCTCGTTAACCA
s cb4.chrX              11400540 47 + 21540570 -CATCTAC-AAAAAACAAG--------------------------TCTAACCGATAATCAtt-----------gctatt-------ttttcga
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   2307040 69 -  4500979 ---TCCACTGAAAAACAAG----------CTAAATGTTATTTCTATCTAACCAGTTATTACC-----------AATATGTCACTCATTACCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    154279 84 -  1189296 ACATTTAG------AGAAGTTCTATCTGCCTGAAAACAAGTTAGACTCAACCAGTTATTACTCTTTCAAT---GTGATTCTGCTCAATAATTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839207 64 +  4147112 GCATCTAG------CCATG---TACccttctaaaa--------------------tttcaatctGTCAAGAAAACAACTTCAACCATTCATTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752225 92 +   823664 I

a score=-3778.000000
s ce10.chrX              5573581 317 + 17718866 -------------------------AATCTTTTCTTAGCCACTCCTTCCGTCTCTAAAATCCCATGAATCATATTCTATGGAATTTGGAAGTGGGTTCTGAGTAACT------------TTTGCTGC--AAAGCTCC---------GTGTTCGGTGATGGGAAACACATAAGAGAAAGGGGAAGAAAAGTTTAAAAGAAAGCCCCTCT-------------TT---------------GAGAATTCTGATTATAAATTCGGCATATCCACTTATTCTTCTT--------------------------------------------ATCCTTTC----CGCCGCGAAC--------------A---------TTTT--------------CGAAAAAAATGCGAGCAGAACATAAAAAACGAG-----TAAAGTTAGGCTGTCAAGAAGAAAGTCTGTTTTATTCATCAAAT-CCTCG---CTC----------------GACA
s cb4.chrX              11400587 245 + 21540570 -------------------------aaccatTAATTTGGTACGGTGCCCT---------------------CAATTAGTTG---TCAAAA----ATTGTGACTGAAC------------TTACCT------AACTC---------------------------ACAACTGGGAAAA---------------------------------------------TTAATTCTCA-------TCATCTTTTG---------------TACCCA--------------------------------------------------------------------TGCCGTCACCAGCATCCGTA----Atagaactttctttttttaacaagaagaaaaaagaaaaacgacg---gcacaaaaaaaGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGA------------------GGAGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2307109 347 -  4500979 -------------------------AAGTGTTGAGTTTTCAATCTTCCCA---------------------GATTTTATGGAATTTAAAATTAGATTGTGGGTAAAT------------TCCTTTTA--GAAATTCT---------GTGTTCGTCACCGAGAAACATATGGAAAAGGGGAGAAGAC----TTTAAAGAAAGCACTTCTG-CGGCTCAATGCTTGCTTCTCA-------TAGCATTCTGATTAAAAATTCGACATACCCActtattcttctc--------------------------------------------atttttctgtcgTCACGTCACCTGCTTCCGTA----acagaacttttttc--------------gaaaaaaaaaacgaag---agacaAAAAGTCGG---------GTTAGGCTGTCAAGAAGAAAGTCTGTTTTATTCATCAAAT-CGGCGATACTCTCCATACTCTACTtgagaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    154363 317 -  1189296 -------------------------AAGTGTAAGAATCTTGTTCTCTAAG---------------------TAATTTATGG-ATTCGGAA----ATTAGGGTCCAGTTATGAATACTAATTGCCC------AACTCTTTAATATCCGTGTTCTTCAACTGA--GCATATGGGGAAAGGAttggaaa----ttcgaagaaagcATTTCG--TGA----------GCAACTCG-------AGGAATTCTGATTAGAAATTCAGCata---------tcttctt--------------------------------------------atttttcc----caACGTCATC-GTCTCAGTT----attgaactcttttt--------------taaaaagagaaagacg---ACATAAAAAGTAGA--------AACAGCGctgtcaagaaaaaagtctgTTTTATTCATCAAAT-CGTCGATACtc----------------aaca
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839271 286 +  4147112 ------------------------------TGAAAACTACGAACACTCAG---------------------TATTTCTTGA-AATATGAA----ACTAGGATAAAAT------------------------------------------------------------------AAAGAAGGACAAC----TTTGAAGAAAGCACTTCTGCTGACTTTTCTCTTGCAACTCGTATCTCAGAGTGTCCTGATTAAAAATTCTACATATCCACTTGTTCTTCTT--------------------------------------------AAGTTTTC----TAACGTcatc-gttttgttttgaaactgaacttttttt--------------gaaaaaaaaaactacgagCACACAAAAACTCTA-----------TGGtctgacaagaaaaaagtctgTTTTATTCGTCAAAT-CGTCGATactc----------------gaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   752317 383 +   823664 AATCTCGGTTTAGTTtatgtttcgaaaaaataaggTTTACCCCCACTCAC----TAAAA------------TATTCTATGGAATTTGGAAGAAGGTTTCAAGTGACT------------TAACTTCCCAGAAAGTCC---------GTGTTCGTTGATGGGAAACACATGGAAAAGCCGCAAGG------TTTAAAGAAAGCACTCAG-------------------CTC--------TCGTATTCTGATTAAAAATTCGACATATCCACTTATTCTTTTCCTCcgctggagaaaaaaaaataaacggaAGGATGAGAAAGGAAACTTCTTCT----CAGCGT--------TTAGCA----ACAGA--TCTTTTT--------------AAAAGGAGATGGGggtaaaagagaaaaaaaaga-aggagaaggcAGTGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAAT-CGTCGGTACTC----------------GACA
i caeJap4.Scaffold18194 I 92 I 2060

a score=48844.000000
s ce10.chrX              5573898 363 + 17718866  
s cb4.chrX              11400832 426 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2307456 467 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold626    154680 463 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3839557 466 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752700 2060 +   823664 I

a score=-8101.000000
s ce10.chrX              5574261 16 + 17718866 AAAAAAAACGCTTCAC--------------------------------------------
s cb4.chrX              11401258 58 + 21540570 --AACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    155143 25 -  1189296 -------------------ttct--------------cctctctttt-ccacattttca-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3840023 41 +  4147112 ----ATCAACCCCCAccacttct--------------cctttttttcgtCCTATTTTCA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e caeRem4.Crem_Contig0   2307923 35 -  4500979 I

a score=90942.000000
s ce10.chrX              5574277 359 + 17718866 ACCGGAATGACACGTTTCCGCACTCTCAGTTAGCAACAACTGGAGTGTGT----------------------TC-AAAACAAAAAAAAACGA--GAATTCGCAACCAATCTGAAGATGAAAACGGCTAGTTCAAATGGCTT--------TGTGCATTCGTCATAGTTGTTTCTCAAAACACTCCCAATGGTTTTA----TGATACTTAAAAAT---ATAATGAAAAAAT--CTCAAGTTTCACATAATCCATCTTTGTG---------------TCTTTTTTCGAAAGTTATTCTT--GACGATGGCGTGGGAAACATATAAACAATACAACAAGAAGTCAGAAGGAGGAGGATATAGTCAGGAGGAGG--------AGGAGTG--AAAAAGAGCATTTAATGAAAATGCAGTGAATCGTAAAGGACT
s cb4.chrX              11401316 331 + 21540570 ACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGA---TGTTTACCa-caagga-agaaaaaaaaatagaaa---gagtAGCATAAG--CTGAAGATG---------AGTTCAAAGGAATT--------------------------------------gctc------agt-------tgattttcaagaatcgCA-AGGGAAAAATTAGCTCGGGTTTCGTTAAATCCCACTTGGCACTTCTTcctctccgttt-tccttcgaaAGTTATTCTGGAGACAAAGGCGTGGGAAACACAAAAACAATACAACA---------AAGTAGGA------AGTCTTAGAGAGT--------GGAAATG--AGAGAGTACAATTGATGAAAGTTCAATGAATCGAAAGAGACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2307958 334 -  4500979 gCCGGAATGACACGTTTCCGCACTCTCAGGTAGCAACAACAA----ATGTTGAGAACTTGTATACCAGCAgttc-aaaacagaaaagggAAAACCGAGAGGTATTAA--CAGAAAATG---------AGTTCAGAAGGATT--------TGTATGGAAACCAT-----------GAAACACTC-----gact-------tgatttttgaaaat---a-agggGAGAGTCGTCTCAGGTTTCTTCAAATCCTACTCTGTG---------------TC-TTTTTCGAAAGTTATTCTT--GACAGAGACGTGGGAAACACATAAACAATACGACG---------AAAAGAGA------AGTGATGAGGAAG--------GAAAGAA--TAAAAGAGCAATTGATGAAAAGTCAATGAATCGGAAGGAATT
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold626    155168 356 -  1189296 ACCGGAATGACATGTTTCCGTACTCTCAGGtagcaacaacaacaaaacgCTGCAAAATTGCCCATGAGCAGttcgaaaacaagaaatacTGG--GGCAGGGTattaa--ctgaaaatg---------agttcaATAAGCTTTTCTGtccttttctgtttctgt-----------gTGGCACTT-----GATTAAAcacttgatttttaaaaat---g-aaaaa--agtt--ctccGGTTTCTACAAATCCTGCTTTGTG---------------TC-TCTTCAGTAAGTTATTCTG--GACAGAGGCGTGGGAAACACATAAACaatataaca---------aaaaaaga------agactcGAGGCAATTGAgacagaaaaac--gaagagagcAATTGATCAAAATGAAGTGGTTCGTGAAGAATT
i caeSp111.Scaffold626  C 0 I 247
s caePb3.Scfld02_0       3840064 338 +  4147112 ACCGGAATGACACGTTTCCGCACTCTCAGGTAGCAACAAGCA-AAAATGTAGAGAGATTGTTTACAAGCAattc-aagacaaaaaagatAGA-TGGTGGGGTATTAGATCTGGAAATG---------AGTTCGAAAGGCTT---------------TGTACGT-----------AAAACACTT-----Gacga------tgattttcaaaaat---g-acagagtAGGT--CTCAGGTTTCCTTAAATCCTTCTCTGTG---------------TC-TTCTCAGAAAGTTATTCTG--GACAGAGGCGTGGGAAACACATAAACAATACAAC----------AAAAAGGA------AGTCttaagaaaa-tgagaaaaaaaaacgagaagggagcaattgaagaaaatgcaATGAATCGTAAGAAAtg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752700 2060 +   823664 I

a score=2379.000000
s ce10.chrX              5574636 12 + 17718866 AG----ATGTTGTAAA
s cb4.chrX              11401647 16 + 21540570 GGGAGAATGTTTCAAA
i cb4.chrX              C 0 I 1236
s caeRem4.Crem_Contig0   2308292 12 -  4500979 Ag----atgtttcgaa
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3840402 12 +  4147112 ag----ttatttcaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e caeSp111.Scaffold626    155524 247 -  1189296 I

a score=-5161.000000
s ce10.chrX              5574648 128 + 17718866 -TTGTG--TGTCTAGTTTAATTTTTTACACGAGGAATTCATGAATAAGAAATATAATA-------CAAAGTAAGAA-ATATGGAAA----------ATTCGAACTAACAAAAAAGGGTATACTGACAATTTTGATA---ACAGTTGTCAAAA---------
s caeRem4.Crem_Contig0   2308306 119 -  4500979 -acaag--TGTCTATCTGAGGTATT-----------CTTATGAATaacggaaaaaatattttttttaaa--agaaa-aaaaggaagtgaCTAACAAGTTAGACTTCTTAAA-----TGACAATGAAAA----AGTG-------TTATCTAAA---------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3840414 113 +  4147112 aacaagaatgtcTAAC---------------------------ATAACTCAGatcata-------aaaa--agaaatataagGGAATGAT------GTAAGAATT-TCAAA-----GTATAGTGAAAAGTATAGTGAGCATGCTCATGTGAACTGGGAGAA
i caePb3.Scfld02_0      C 0 I 56
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e cb4.chrX              11401663 1236 + 21540570 I
e caeSp111.Scaffold626    155524 247 -  1189296 I

a score=430.000000
s ce10.chrX              5574776 68 + 17718866 AAGGACCATATGCAAAAAAATAC--GTTTCGTAAATAGTT----GTTTGTTTTGAAAATAGGGGTTATTAAAAT
s caeRem4.Crem_Contig0   2308425 70 -  4500979 ATG----ATAAACAATAAAACATGGGCATTGTAGAAAGATAAAAATTTATCTTGAACAATTTGATTCTTCAAAT
i caeRem4.Crem_Contig0  C 0 I 92
e caePb3.Scfld02_0       3840527 56 +  4147112 I
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e cb4.chrX              11401663 1236 + 21540570 I
e caeSp111.Scaffold626    155524 247 -  1189296 I

a score=0.000000
s ce10.chrX              5574844 1 + 17718866 G
e caePb3.Scfld02_0       3840527 56 +  4147112 I
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e cb4.chrX              11401663 1236 + 21540570 I
e caeSp111.Scaffold626    155524 247 -  1189296 I
e caeRem4.Crem_Contig0   2308495 92 -  4500979 I

a score=-4658.000000
s ce10.chrX              5574845 701 + 17718866  
s caePb3.Scfld02_0       3840583 609 +  4147112  
i caePb3.Scfld02_0      I 56 C 0
e caeJap4.Scaffold18194   752700 2060 +   823664 I
e cb4.chrX              11401663 1236 + 21540570 I
e caeSp111.Scaffold626    155524 247 -  1189296 I
e caeRem4.Crem_Contig0   2308495  92 -  4500979 I

a score=490577.000000
s ce10.chrX              5575546 793 + 17718866  
s cb4.chrX              11402899 834 + 21540570  
i cb4.chrX              I 1236 I 4
s caeRem4.Crem_Contig0   2308587 785 -  4500979  
i caeRem4.Crem_Contig0  I 92 I 667
s caeSp111.Scaffold626    155771 781 -  1189296  
i caeSp111.Scaffold626  I 247 I 8
s caePb3.Scfld02_0       3841192 791 +  4147112  
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18194   754760 784 +   823664  
i caeJap4.Scaffold18194 I 2060 C 0

a score=815.000000
s ce10.chrX              5576339 4 + 17718866 TGAT
s cb4.chrX              11403737 4 + 21540570 TTCT
i cb4.chrX              I 4 C 0
s caeSp111.Scaffold626    156560 4 -  1189296 TGCA
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       3841999 4 +  4147112 TGCT
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18194   755544 4 +   823664 TGAT
i caeJap4.Scaffold18194 C 0 I 740
e caeRem4.Crem_Contig0   2309372 667 -  4500979 I

a score=-789.000000
s ce10.chrX              5576343 16 + 17718866 TGAATTAGTCATACAT
s cb4.chrX              11403741 14 + 21540570 T--ATTAATCGTTCAT
i cb4.chrX              C 0 I 1416
s caeSp111.Scaffold626    156564  9 -  1189296 TTCATTAAC-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3842003  9 +  4147112 TTCATTAAC-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   755548 740 +   823664 I
e caeRem4.Crem_Contig0   2309372 667 -  4500979 I

a score=1210.000000
s ce10.chrX              5576359 18 + 17718866 ATGTAGAAACTCGTGCTT-
s caeSp111.Scaffold626    156573 18 -  1189296 ATCTTGGAATCTGTGTCT-
i caeSp111.Scaffold626  C 0 I 326
s caePb3.Scfld02_0       3842012 19 +  4147112 ATCTCAGAATTCATGTCTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   755548 740 +   823664 I
e cb4.chrX              11403755 1416 + 21540570 I
e caeRem4.Crem_Contig0   2309372 667 -  4500979 I

a score=-7165.000000
s ce10.chrX              5576377 1084 + 17718866  
s caePb3.Scfld02_0       3842031  937 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   755548  740 +   823664 I
e cb4.chrX              11403755 1416 + 21540570 I
e caeSp111.Scaffold626    156591  326 -  1189296 I
e caeRem4.Crem_Contig0   2309372  667 -  4500979 I

a score=22.000000
s ce10.chrX              5577461 31 + 17718866 TCGAATCTGGTTGAAAACAGC----AAA------------TTTACCG-
s cb4.chrX              11405171 48 + 21540570 TTGAATCCGGTTGGAAGCAATgataaaaaggagaaaaagcgTGAAGGA
i cb4.chrX              I 1416 C 0
s caePb3.Scfld02_0       3842968 34 +  4147112 ttgaaTCCGGC--AAAAAAGTGGTAGGA------------GTTAAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   755548 740 +   823664 I
e caeSp111.Scaffold626    156591 326 -  1189296 I
e caeRem4.Crem_Contig0   2309372 667 -  4500979 I

a score=97132.000000
s ce10.chrX              5577492 370 + 17718866 ACTCATTAATAGTAATTGAATATCAGTACGATTGTTTACTACTTAT------------AAAAAATGGCAGCAC-------------CGGTTAGACGTT-C-CTTTTAAGTGTCA---TTCTTTCAAATTATCGTGAACTTCCCTTTTATTATCCTGCTCGCACCGGTGTTTT-CCACATATTTTCGCAGTTT-------TCAG----TTTTTAG--------------TATTTCCCAGCGTTC------CAGCTCACCACGA-GGTACCCGACTGACG----------------------------------ACAAAAATAATAG------ACATATTTAGCAGATAAGC-AGTCGCTAAGTAAATGAGAATTCTACTTGTTTGTTT-----CGTCTTCTGTCTG----------TTCCCGAA----CCCCTCCCTGTCAGGAGTT--------TATGTCTG---AAAGTAGTTTACGCACCTCATTTTTCTTTCTCGCTTTCA
s cb4.chrX              11405219 357 + 21540570 ACTCATGAATAGTAATTGAATATTAGTACGATTGTTTACCACTTAT--------------CTAGTGA--ACAA-------------CGATTGAGcgttcctttttttcattttatgccgcttttgaatttgcacaaagaacttttcttgct---------------cgattt-ttctattttgtcaTGCttt---------------tttttAG-----------AGCTG-------------------GAGCACT----GT-GTTTTTCATGCAACGTTC-CATGAATCGGTTCCATCAGTTAACTAGcctagaaaaatattaa------aaatactT------TAAGCAAGTAGCTAAGT-AATGAGAATTTcacttgttattttttctgtttttttctcttttt-------ttcccagaagAATCCTAG------------TT--------tatgtctggaaaaaatagtttaCTCACC-------TCTCC----TTTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2310039 322 -  4500979 ACTCATGAATAGTAATTGAATATTAGTACGATTGTTTACCACTTAT--------------CGTGGAACCACAA-------------CGATTAAGCGTTCC-TTTTTTAATGTCA---CGCTTTGAAATTActgtgaaattatttttttttt---------------cttttcattcttttttgtcatGCTAG---------------CCATT--------------GTCA-------------------GTGCTCA----GA-GATTCTCGAGTAACG----------------------------------AGAAATATAATAG------ACTCATTTAACGGATAAGC-AGTAGCCAAGTAAATGAGAAttttacttgtttgttt-----cgttttcctttttct-------ttttcagaa----cccCT------------TT--------agtgtctg--aaaaatagtttactcacctcgttcttcttt----ttttca
i caeRem4.Crem_Contig0  I 667 C 0
s caeSp111.Scaffold626    156917 381 -  1189296 ACTCATGAATAGTAATTGAATATTAGTACGATTGTTTACCACTTAT--------------CGCTGAACCACAA-------------CGATTAAGCGTTCC-TTTTTCTGTGTCA---CGCATTGAAATTACGGtgaacttattttttcttcaca-gc---cacttctttttt-gtctcttttgtCATGCTTACCGCACTGCCggtgtttttcagtttttattctcaGTTATTGCACATCGTTCTTCGACCTGCTTA----GCTGCTACtcgaaaaac-----------------------------------ggaaaaataatAG------ACATATTTAGCGGATAAGG-AGTAGCTAAGTAAATGAGAATTTCACTTGTTtgttt-----cgtcttctttttttt-------attccggAA----GAGCT------------TT--------AGTGTCTGC-AAAAATAGTTTACTCACCTCATTGCCACTC----CTCTCA
i caeSp111.Scaffold626  I 326 C 0
s caePb3.Scfld02_0       3843002 358 +  4147112 ACTCATGAATAGTAATTGAATATTAGTACGATTGTTTACCACTTA--------------------AACGACAA-------------CGATTAAGCGTT-C-TTTTTCTATGTCA---CGCATTGAAATTACGatgaacttattttttttcgata------------tttttt-tttcctgttgtcATGCTTAGAGCA--GCCGgtg-ttttcag---ttattttcagttattttacATCGTT-------CTGCTCA----GA-GCTACTCGAGtaccg---------------------------------agaaaaaataatag------acaTATTTAACGGATAAGC-AGTAGCTAAGTAAATGAGAATTTTACTTGTTtgttt-----cgtcttctttttt----------ttccggaa----ccCTT------------TTTCACTCAAAGTGTCTGT--AAAGTAGTTTACTCACctcatctttctct----ctttca
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   756288 373 +   823664 ACTCATGAATAGTAATTGAATATTAGTACGATTGTTTACCGCACATCGTGatacaaaacaaaataaaaaacaaaataaaaggCAAGCGATTAGAAG---C-TTT-------------TCTGTTGAAGTTACTGTGAACTCA-------------------------TTTTTG-CTCAAGTAGGTCTCACTTG---------------CTCTAAG--------TGGAACAA-------------------TTGCCTT----GA-CCTGCCCTaaaaacaggagaaaaaagaaaatagaaaagaaaaagaagaaaaaaaaataataataatacacACATTTAACGGGTGAGG-AGTAGCTAAGTAAATGAGAtttttacttgtttgttt-----cttcttctttctattttttttatttttgcta----ttttt------------tc--------tatttttc-------tattttctttttttttgtcttttct----cTTCCA
i caeJap4.Scaffold18194 I 740 I 51

a score=8891.000000
s ce10.chrX              5577862 48 + 17718866 TAAGCCAGATGTATATTGCCTCTGGAAAATAG----CCTCTCTTTCGG--------GCCT
s cb4.chrX              11405576 57 + 21540570 TAAGCCTCATGTAAAGCGCCTCTGGAAAAggag---cttcttttttttagggGACGAGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2310361 47 -  4500979 taagtcTTATGT--ATTGCCTCTGGAAAAGAAG---CTTCTCTTTTCT--------TGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    157298 35 -  1189296 TAAGCCTCATATaca-----tctagaaaaaaga----------cttCA--------GA--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3843360 52 +  4147112 taAGCCTCATGAATAGCgcctctggaaaaaaaggctcttcttttttcg--------ggCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   756661 51 +   823664 I

a score=48903.000000
s ce10.chrX              5577910 146 + 17718866 CGGTTATTTGTATG--TTTTTCAACTTAGTCG---GTTTTTGTCGCGGGACT--CTTTTTTTCCTGT-------TCCCTTTTTCTGAAAGTTTGGGTGTTGTTTGA---------AGAAAAAATATAAA---TAAAAAACAAACGGTGTTCTTGACATATCATTTTGAATAT
s cb4.chrX              11405633 127 + 21540570 CGGTTATTTGTATG--TTTTTCAacttagttg---ttttttttc-cgagacc----------------------tcttctttttttc------gtctgTAAGTgag---------ataggaaa-aaaaa-tttaaaaaataggatGTGTTTTAGACATATCTTTCGGAATAT
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2310408 160 -  4500979 CGGTtatttgtatgtttttttcaacttagTCG---GtttttttC-CGGGACCCCCGTTCTTCCTCCCTTGCCTATCGCCTTTTTTGT------GTATGCGAGTGAGTTTGTCGTTCTAAgaag-ataaa-aattgaaaacaggcTGTGTTTTAGACGTATCATTCTGAATAT
i caeRem4.Crem_Contig0  C 0 I 55
s caeSp111.Scaffold626    157333 141 -  1189296 -GGTTTTTTGTATG--TTTTTCAACTTagtca---gtttttttc-cggGACC--CCTTCTTTCTCCTCCGCCTAT----TTTTGTGAAAG---GCTTGTTGCTCag---------agaagata-aaaaa-ttttgaaaacaggcTGTGTTTTAGACGTA----TCTGAATAT
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3843412 143 +  4147112 CGATTATTTGTATG--TTTTTCAACTTAGTC----GtttttttC-CGGGACC--CCTTTTTCCTCCCCCGACGATCG-CTTTTTTGA------GTGTGTTGCTTCG---------agaagata-aaaaa---ttgaaaataggcTGTGTTTTAGACATATCATTCCAAATAT
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   756712 149 +   823664 ctttttttcttgtg--agcTTCATTGAAGccggttgtttttttt-tgtcgct--catttttgcatatttggttctttttcattttta------gggTCGAgtggaa---------tgaaaaat-aaagagCATTGCATGCATGTGGTGTTTTAGacgtattttccaaaat--
i caeJap4.Scaffold18194 I 51 C 0

a score=-5406.000000
s ce10.chrX              5578056 19 + 17718866 ----TA--TGCAC----GTTCTCGGTCTG
s cb4.chrX              11405763 15 + 21540570 ----GACTCGAac----gcttta------
i cb4.chrX              I 3 I 9
s caeSp111.Scaffold626    157477 23 -  1189296 ----GA--CAGacataaatttttgttttt
i caeSp111.Scaffold626  I 3 I 24
s caePb3.Scfld02_0       3843558 19 +  4147112 ----ga--agaat----ttttttgttttt
i caePb3.Scfld02_0      I 3 I 84
s caeJap4.Scaffold18194   756861 22 +   823664 tttgga--ataat----ttttcagtagt-
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2310568 55 -  4500979 I

a score=-49984.000000
s ce10.chrX              5578075  81 + 17718866 ----------------CCTTTATTTTTAAAATATT-----------------------------------------------TTTGGCGGCT----GTTTTGTAAC---------AAAATTCAGTTTTTATTTTCTTTAGCACAAAATT------------------------------AAAAAATA
s cb4.chrX              11405787  66 + 21540570 ----------------ttttttgtcttgtcTTGAC-----------------------------------------------TGGAgtgtca----aattttc--------------------attttcagaacgatC----CTGAATT------------------------------GATGAGTG
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2310623 114 -  4500979 ----------------ttcagaatgctGAAATAGA-----------------------------------------------TGGCTGATCA----ATTTTTTGGCCCTCCAATTAA--ggaaattttgacaattttt----gtgaattctgGGGACTGGCTTTCGATCAAGGAGAAAAAAcgggtt
i caeRem4.Crem_Contig0  I 55 C 0
s caeSp111.Scaffold626    157524  52 -  1189296 ----------------ttcagatgacttaaaaatt-----------------------------------------------ctagtgatta----gttttttgacagttt--------------------------------------------------------------------ccatgatt
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       3843661 150 +  4147112 ----------------ctttgattattgagaaattggttaatttttttctcgaaaaccatctgaaaataggggTTTGCCGCGTTTGTGAAGATGATATTTCTCAACACTTTATTgaactttaaatttt-----tttgt----ctgaatt------------ttATTGTAGATTGGTAGAACACagtt
i caePb3.Scfld02_0      I 84 I 145
s caeJap4.Scaffold18194   756883  58 +   823664 ccttcattttccttctttcttttatttAAGGTTGT-----------------------------------------------TCTAGTAGcg----gttattttaaaaa------------------------------------------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-4791.000000
s ce10.chrX              5578156 45 + 17718866 ACCCGTTCAAAAAGATTGACTTTAAGAATTCTGAGAAAAGACAAA
s cb4.chrX              11405853 21 + 21540570 ---------------ATCACTTTCAGAT---------AAGaatat
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   2310737 26 -  4500979 ---------------ttcattttttaatgctTC----Aagcatac
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold626    157576 36 -  1189296 -----accaaaaaaattggtttttcgagTTTGG----GGGTCTAG
i caeSp111.Scaffold626  C 0 I 57
s caeJap4.Scaffold18194   756941 36 +   823664 -----ttaagtgAAAtagatttttggaaatttg----tgGAAAAA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3843811 145 +  4147112 I

a score=-4373.000000
s ce10.chrX              5578201 22 + 17718866 TTATTTTTAAGTTTTTT--ATTGT----
s cb4.chrX              11405895 14 + 21540570 --------ggacTTTTT--GTTGC----
i cb4.chrX              I 21 I 82
s caeRem4.Crem_Contig0   2310806 24 -  4500979 TTTCAACTGAACTTTTTCCGTTCC----
i caeRem4.Crem_Contig0  I 43 I 110
s caeSp111.Scaffold626    157669  9 -  1189296 -------------TTTT--TCTGC----
i caeSp111.Scaffold626  I 57 I 47
s caePb3.Scfld02_0       3843956  9 +  4147112 -------------TTTT--GTTGC----
i caePb3.Scfld02_0      I 145 I 46
s caeJap4.Scaffold18194   756977 11 +   823664 ---------------GT--GGTGCAAAG
i caeJap4.Scaffold18194 C 0 C 0

a score=-2326.000000
s ce10.chrX              5578223 25 + 17718866 TCCTGTCGTCGAAG---TAAGGCATAAC
s cb4.chrX              11405991 19 + 21540570 ATCTTCT----AAgctcaaaaac-----
i cb4.chrX              I 82 C 0
s caeSp111.Scaffold626    157725 24 -  1189296 atcagtc-tgaaaa---aaaagcataac
i caeSp111.Scaffold626  I 47 C 0
s caePb3.Scfld02_0       3844011 21 +  4147112 TTCAGTC----AGA---AAAAGCAtaac
i caePb3.Scfld02_0      I 46 C 0
s caeJap4.Scaffold18194   756988 15 +   823664 ----------AAAA---TGGAACACAAC
i caeJap4.Scaffold18194 C 0 I 1
e caeRem4.Crem_Contig0   2310830 110 -  4500979 I

a score=31261.000000
s ce10.chrX              5578248 29 + 17718866 AAAAATCTCATTTTAGAAACGATGTTTTT
s cb4.chrX              11406010 29 + 21540570 aagaatttcatTTCAGAAACGATGTTTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2310940 29 -  4500979 cgaaaTTACATTTTGGAAACGATGTTTTC
i caeRem4.Crem_Contig0  I 110 C 0
s caeSp111.Scaffold626    157749 29 -  1189296 aagaatttcattttggaaaCGATGTTTTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3844032 29 +  4147112 aaaaattccatttcgGAAACgatgttttc
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   757004 29 +   823664 AAAAATCTCATTTTGGTAACGATgttttt
i caeJap4.Scaffold18194 I 1 I 549

a score=11750.000000
s ce10.chrX              5578277 584 + 17718866  
s cb4.chrX              11406039 562 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2310969 566 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    157778 483 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3844061 544 +  4147112  
i caePb3.Scfld02_0      C 0 I 45
e caeJap4.Scaffold18194   757033 549 +   823664 I

a score=1477.000000
s ce10.chrX              5578861 6 + 17718866 TTTTCA
s cb4.chrX              11406601 2 + 21540570 ----ca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2311535 6 -  4500979 ttgtca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    158261 6 -  1189296 ttgtca
i caeSp111.Scaffold626  C 0 I 121
e caePb3.Scfld02_0       3844605 45 +  4147112 I
e caeJap4.Scaffold18194   757033 549 +   823664 I

a score=-1734.000000
s ce10.chrX              5578867 35 + 17718866 GTAGTTCCTCAAAATAAGCATACATCAAATTATCA
s cb4.chrX              11406603 16 + 21540570 ttattttttt-------tccttc------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2311541 27 -  4500979 ctattttctc-------gcttttttcaaatt-tcg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3844605 45 +  4147112 I
e caeJap4.Scaffold18194   757033 549 +   823664 I
e caeSp111.Scaffold626    158267 121 -  1189296 I

a score=-5762.000000
s ce10.chrX              5578902 39 + 17718866 AAACACGATTAAAACATTTTATGTAGAAAAAATTTTTCT
s cb4.chrX              11406619 14 + 21540570 ------------accCTTATTTG----------TCT---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2311568 24 -  4500979 ----------aaaaccttttctg--gaagaaaatct---
i caeRem4.Crem_Contig0  C 0 I 97
s caePb3.Scfld02_0       3844650 25 +  4147112 -AA-------ACACACATTCTCGACAAAAAGAA------
i caePb3.Scfld02_0      I 45 C 0
e caeJap4.Scaffold18194   757033 549 +   823664 I
e caeSp111.Scaffold626    158267 121 -  1189296 I

a score=-3664.000000
s ce10.chrX              5578941 64 + 17718866 GGTCAACTTCCAAACATTATGGTGATTTTTCACCATTTTTCGACTGCAAAATGTTAAAAAATGT---------
s cb4.chrX              11406633 63 + 21540570 TACTTACCCCCAAATagtttgttcttttttgttttgtt----------ccaTGTTGACGGGGGTAAAAAACCT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3844675 42 +  4147112 ---------------AGTCTACTCATTGCTCATGGCTT----------AACAGTTAACCCCTGAAAG------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   757033 549 +   823664 I
e caeSp111.Scaffold626    158267 121 -  1189296 I
e caeRem4.Crem_Contig0   2311592 97 -  4500979 I

a score=-7228.000000
s ce10.chrX              5579005 79 + 17718866 TTTTAAAAAAT------------------TTTACCACGATATTTGGTAATTTTAGCATAGTTTAAGTGATTTTAAA---TAGT--TTTCCCTCTGAC-TAGTG---------
s cb4.chrX              11406696 95 + 21540570 CTCAGAAGAGTCACTTCATTGATCATGGCTTAACAGTTAACCCctggaaattt-------------cttttttgaa-actatt--ttgaaaacttca-ttACCCCACTCctt
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold626    158388 71 -  1189296 ttccaaaaatt------------------tgtgtatttatttctcgaaacgtt-------------tgtttttctg---tagt--ttttcagtt----ttgtcaCAAAGCG-
i caeSp111.Scaffold626  I 121 C 0
s caePb3.Scfld02_0       3844717 80 +  4147112 TTCCGAAAGTT------------------TTCacatttattttctgaaaacct-------------cgGTTTTCTTCCCTAGTCGTATTCAGTTTTACTTGTCACAAACCG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   757033 549 +   823664 I
e caeRem4.Crem_Contig0   2311592 97 -  4500979 I

a score=18918.000000
s ce10.chrX              5579084 60 + 17718866 TTTTTCGACAGGAA------AACAAGTTATAAATCAGTCAATCTTGTTTTATTAGTTGTAGTTTAA
s cb4.chrX              11406793 66 + 21540570 ttccggaagaaaagaCAACAAACAAGTTATAAATCAAGCCACTTCGTGTTATTCGTTTCAATCCAA
i cb4.chrX              I 2 I 8
s caeRem4.Crem_Contig0   2311689 61 -  4500979 tttcttGTCAAGAGACAACAAACAAGTGATAAATCAG-----TTCATTTTATTCGTTTCAATCCAG
i caeRem4.Crem_Contig0  I 97 I 5
s caeSp111.Scaffold626    158459 56 -  1189296 --------CGACAAACAA--GACAAGTTGTAAATCAGTCTAGTTTCTTTTATTCGTCTCAATCCTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3844797 55 +  4147112 ---------GACAAACAAACAAGAAGTTATAAATCAGTCTAGTTCATTTTATTCGCTTCAATCC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   757033 549 +   823664 I

a score=-3380.000000
s ce10.chrX              5579144 13 + 17718866 --------GGAAAGGATCAAA
s caeRem4.Crem_Contig0   2311755  5 -  4500979 ----CCTAG------------
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    158515 13 -  1189296 CTAGGCTAGTAAA--------
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3844852 10 +  4147112 ---GGCTTGTAAA--------
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194   757033 549 +   823664 I
e cb4.chrX              11406859  8 + 21540570 I

a score=423.000000
s ce10.chrX              5579157 7 + 17718866 TGGATCA
s cb4.chrX              11406867 7 + 21540570 TGAAGAA
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2311760 6 -  4500979 TGTA-CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    158531 7 -  1189296 TAGAGCA
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3844865 7 +  4147112 TCAAGCA
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194   757033 549 +   823664 I

a score=8142.000000
s ce10.chrX              5579164 69 + 17718866 TTTGTTTAC---ACAAT-TC---AGATCTCATCT---GGA---T---------AAAAATTTATTTTGCTT--------------A-----------TTT-----TCG---TGAAGTTTAGA--TTG
s cb4.chrX              11406874 81 + 21540570 TTTGTTTAT---AAAAG-TCAGAAGATCTCATTT---GAA-GCTTTTCTGATTggaaatttgttttgttt--------------t-----------ttg-----ttt-----tgcttAAGA--TTG
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2311766 86 -  4500979 TTTGTTTAT---AAAAG-TC---AGATCTCATCT---TAG-TCt----cgattgaaaatttgttttgttt--------------tcttctccattcttG-----CTT----GTGATTTAGA--TTG
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold626    158538 85 -  1189296 TTTGTTTATAGAAGAAG-TG---AGATCTCATCT---AGATGCT---------CAgcatttgttttgttt--------------t-----------ttcctaATTCAAACAGCCGTTTGAAGTTTG
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3844872 77 +  4147112 TTTGTTTAT---AAGAA-TG---AGATTTCGTTTCCGAGA-gct---------ttgaatttgttttgttt--------------t-----------ttc-----ttcaacggTGATTTGGA--TTG
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18194   757582 78 +   823664 TTTGTTCCC---ACAAGATC---AGATCTCATCC---GAT---T---------GAAGACCTCTCACGCTTCAAAtaaactggaat-----------ttg-----ttt---------atAGA--ACG
i caeJap4.Scaffold18194 I 549 C 0

a score=-2284.000000
s ce10.chrX              5579233 12 + 17718866 GAGAGAGAGAAT---
s cb4.chrX              11406970 12 + 21540570 ACGAAAGCGAGT---
i cb4.chrX              I 15 I 3
s caeSp111.Scaffold626    158626  8 -  1189296 ----GAATCATT---
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3844966  8 +  4147112 ----AAATGAAT---
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18194   757660 14 +   823664 -GAAAAACGGAGAAG
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2311852 30 -  4500979 I

a score=176301.000000
s ce10.chrX              5579245 440 + 17718866  
s cb4.chrX              11406985 433 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2311882 426 -  4500979  
i caeRem4.Crem_Contig0  I 30 C 0
s caeSp111.Scaffold626    158634 433 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3844974 451 +  4147112  
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18194   757674 485 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=310.000000
s ce10.chrX              5579685 5 + 17718866 GAAGA
s cb4.chrX              11407418 1 + 21540570 ----A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2312308 1 -  4500979 ----A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    159067 1 -  1189296 ----A
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   758159 5 +   823664 aaaaa
i caeJap4.Scaffold18194 C 0 I 1976
e caePb3.Scfld02_0       3845425 24 +  4147112 I

a score=-4154.000000
s ce10.chrX              5579690 25 + 17718866 TTTTCCTTCCACCC---ACACGAGAAAA-
s cb4.chrX              11407419 20 + 21540570 ATATacttgaaaac--------gaaaaa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2312309 28 -  4500979 TTCTATCTGGACACCCGGCACTTGAGGC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    159068 24 -  1189296 TTCCCGTTTTATAC-----ACTCagagtg
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3845425 24 +  4147112 I
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=117153.000000
s ce10.chrX              5579715 302 + 17718866 TAAAACAAA---------ATAATA-GTCTATTGTTTCAAGTTGCCCTTT----GCCCAATTTAAAAAGACGT---TGACAAGTCCCAAAGGTCC------AGGAGTTTC--CCCA------TCTCT-----------TACGTTGTGTCTAACTCCCAGCTAACCCATTTTTCAATAACTTTGTTTTG--TTTTCAATTTGATT---------------TCCTCTACACATTTTCT-------------------------ACATCATTAGAACAAAA-TTTC-AAACTTTTTCCAAAATGCTCTACCAAGAGATTTTCTTTACACCTATTATCCATATGCGACGCAGA---GACGATCCGGCG---AATGGGAAAAAATCTGGTACTGGTTAGG--
s cb4.chrX              11407439 348 + 21540570 tgagggaaattatttttcctattt-ttccattGTTTCAAGTTGCCCTCT-----TACA------AAGAA-------ACCAACTCCCAAAGGTCCCTCAAAAGGACTTCCCACCCACTGTgttatgtttttttctctatctttTGTCTTTGGCTG-------A--CATGTTTTCATAACTATATTCTGGTTGTGCAATTCAATTTGGTCACAGagtgaaactttcaaaaagtttccgcCATATATATGATTGCAC-------CATCCTCGTTAG-----TCCCaaaaatatcccaaaaatgCTCTACCAAGAGATATTCTTTACACCTATTATTCACATGCGACGCAGA---GATGATCAAAAG---ATGGAAAGAAAAGCTGGTAATGGTTAAA--
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig0   2312337 328 -  4500979 TCAGGAAAA---------ATAATG-TCCTATTGTTTCAAGTTGCCCTTTTT--GTCCAATTTGTAAGAATGTG--GACCAACTCCCAGAGGTCCCTTAAAAGGACTTCCCACCCACTGTGTTATTT-----------TCTTTTGTCTTTGACTGACAGCTTA--CATGTTTTCATAACtatattctg--ttttctatTCAATTTGG------------ACT------AACTTTCC----TACATATGATTGTGCATTGGGGCATCGTTAGTAG-----CCTC----GTATTCTCAAAATGTTATACCAAGAGATATTCTTCACACCTATCATTCACATGCGACGCAGA---GACGATCAGAAG---TCCGACAAGAAATCTGGTACTGGTTAAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    159092 350 -  1189296 agagaaaaa---------acaatgtttctattgtttcaagttgcccttttttcttccaatttaaAAAGATGT---CGACAACTCCCAGAGGTCCCTTAAAAGGACTTCCCACCCACTGTgttattt-----------tctattgtttctGACTGACAGCTTA--CATGTTTTCATAACTATATTCTG-TTTTCCTATTCAATTTGG------------ACCTTTTTCCACTGTCC-CCCGCCCTATGATTGTCTATCGAGACATCATTAGCGTTACGGCATC----TTATTCACAAAATGCTCTACCAAGAGATTTTCTTCACACCTATTATTCACATGCGACGCAGAGACGACGATCAGAAA---CATTGCAAAAAATCTGGTACTGGTTAAAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3845449 336 +  4147112 TGAGGGAAA---------ATATTG-TTCTATTGTTTCAAGTTGCCCTTTTTTGGGCCAATTTAAAAAGATGTGGACAACAACTCCCAAAGGTCCCTTAAAAGGACTTCCCACCCACTGTGTtattt-----------tctattgtttctg-------GCTAA--CATGTTTTCATAACTATATTTTG-TGTCACTATTCAATTTGG------------ACTTTT----------C-TCGGGCGTATGATTGTGTATTGGTACATCATTAGCCTATC--TATC----CTATTCCAAAAATGCTGTACcaagagatttttttcacaccTATTATTTACATGCGACGCAGAGACGACGATCAGAAAGCGGCTTGCAAAAAATCTGGTACTGGTTAAAAG
i caePb3.Scfld02_0      I 24 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=-2093.000000
s ce10.chrX              5580017 18 + 17718866 CTTCAC---------CCCCAGGATTCT
s caeRem4.Crem_Contig0   2312665 26 -  4500979 CTTTGCAAAAACTTCtctcagatttc-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    159442 21 -  1189296 -CTTGAAGAA-----CTTCACTCAACC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3845785 21 +  4147112 -TTTGCAAAA-----CTTTGGAgctcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e cb4.chrX              11407787 43 + 21540570 I

a score=-11788.000000
s ce10.chrX              5580035 139 + 17718866 TAGAAATGAAA--AAAAAAAA-------------------------------CTAAATTCAAA----------------CAAAACCAAAACATGTGTGAATCTT-----------------------GTAAATGATTGCTATGTATCGTTGTATGCCAAGTAAATTTTTGTTTTATTGTTTTTCTGA------------ATAGTTCAAGCTATGCAAAAAGGT
s cb4.chrX              11407830 158 + 21540570 ------tggga--agagaaaa-----aaaacg--------------------ctaaattcaaacaatacgcgtaaaaactaaaaccaaaacATGTGTGGATCTGGGGTGTGTGGACTTACTCAATGAGCAGACAATGAC----TGCTATTATATGCCGAGTTGGTTT-----TTATGtgctttgaaa-----------------------aatgcaaaaaagt
i cb4.chrX              I 43 C 0
s caeRem4.Crem_Contig0   2312691 183 -  4500979 -------aaaa--aaagaaaa-----gaagcgaaagtgagaaaaaagcaaaactaaattcaaacaagacg---------taaaaccaaaacATGTGTGGATTT-------------CTACTCTATGAGCAGGCAATGAC----TGCTATTATATGCTAAGTGTGTTTCTTCATTCTATGCTTCCGAATAAGTCTTCTCAGTACACCTAGTTATGCaaaaaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    159463 170 -  1189296 TCTGATTCAAACCACAGAGAAATGTGGAAgcg-----gagaaaagagagagaataaattCAAACAGGACG---------TAAAACCAAAACATATGTGGGTCTA------------TGATTTGATGAGCAAACGAAGGC----TTTCattactttttaaa-aagtttctttattattttcattaata----------------------GTATGCGTAAAGGT
i caeSp111.Scaffold626  C 0 I 176
s caePb3.Scfld02_0       3845806  29 +  4147112 caaaaatcaaa--acagaaaaatgtgaatgc------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=1379.000000
s ce10.chrX              5580174 4 + 17718866 GAGT
s cb4.chrX              11407988 4 + 21540570 gaGT
i cb4.chrX              C 0 I 186
s caeRem4.Crem_Contig0   2312874 4 -  4500979 aagt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3845835 4 +  4147112 tagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    159633 176 -  1189296 I

a score=-408.000000
s ce10.chrX              5580178 45 + 17718866 -----GATAAGCAATGCATTCAAAAATAAAAATGTAAATGTAAAAAATAA--
s caeRem4.Crem_Contig0   2312878 50 -  4500979 ttgttcaaaaatcagattttgaaaaatgaaaatggatttttgaaaaatga--
i caeRem4.Crem_Contig0  C 0 I 37
s caePb3.Scfld02_0       3845839 36 +  4147112 -----gaaaaaaaaaa----gaaaaatctaaa-------ttcaaACAAGACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e cb4.chrX              11407992 186 + 21540570 I
e caeSp111.Scaffold626    159633 176 -  1189296 I

a score=-3480.000000
s ce10.chrX              5580223 260 + 17718866 CCCATGATCAGTATATTTCCGCCATAAGGTGGCTATCGTATATCATTTTTTAAATTCAGTTTGTTAGTAACAAGCTTGAAATACATCACTATAATACATTCCGTGTTGTCGGGGCGACACAAGGGCGCCTTTTCTACGCCTCTTCATTCGCCCTCCTCGCACCTTATTGGCTATCTACACTGTGTACAATGTGCACATTGTGCACACTGTGTGCAATTTTTGGCCATAGTGTTAAGACGGTTC--ACATACGCTACTAAACG
s caePb3.Scfld02_0       3845875 145 +  4147112 TGTAAAATCAAAACATGT----------GTGAATCTAAGATTTCCTCTTTGAGAT----------------------GAGAATGACTGCTCTAATA--TTCTAAGTT----------------------TGTTCCACaactatttct---------------cttttttgctttgttcATTATGCGTAA--------------------------------------------AGGTtggtttgaaaagaaaataatgaa--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e cb4.chrX              11407992 186 + 21540570 I
e caeSp111.Scaffold626    159633 176 -  1189296 I
e caeRem4.Crem_Contig0   2312928  37 -  4500979 I

a score=-12517.000000
s ce10.chrX              5580483 270 + 17718866 TTTGTTTCTTGTATTATCCAGTCCGTATTGTC---TTTTGACAAGCCTTTAttgttaaatgcaaaaaagtgtgtgccttaaaaaaAACACATCATCTTAACAAACCGCAAAAAATACGGCAGAAAATTTATTTAAAA---AGGTTACGCAGACACAAGCTCTTGGATGTACAGTATACAATTTGAATGCTCACACTTTTTGCGGGTAC--CAAACCGAATTTTTTACGCAAAAA-----------TTGTAAAATATCGTGTTCACATCACATTTCAT-----TTTTTCACTGCT
s cb4.chrX              11408178 187 + 21540570 ---------------------tttgcattttatttttttaaacagtttCT-------AATGTCAGA----------CTGAAT--------ATTattcaaat------------------ctgaaaacctgCTTAA-----CGGATTTG----TGTAACACAAGGGCTCCTTTAACTgtcattttg--gattttattgTTCTCGGTTCC----TACTAGACGtgt----caaaaa---tattccagTCATAAACTC----Agctgaccaatttttgat-----------------
i cb4.chrX              I 186 C 0
s caePb3.Scfld02_0       3846020 224 +  4147112 --------------------------attgtA---CTTTGAAAAGTTATTA--GGGGAAAGTAAAA---------CCCGAATGA------AACATCGTAAC------------------CCGAAAATTAGTCGGAAATTGAGGATGTGAAGTTAGAAGGAGTGGCTTATGTTCATTTCCGTAGTA--GCTCACATTCATAGAGTTTATGCAACACTGCATTTTT----CATAACATTCACTCTTGGAATAAAACCCAAAAgttgaatggtttttgattctagttttttgtttct
i caePb3.Scfld02_0      C 0 I 88
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    159633 176 -  1189296 I
e caeRem4.Crem_Contig0   2312928  37 -  4500979 I

a score=-1037.000000
s ce10.chrX              5580753 106 + 17718866 GTCCATAGGTCCACAATAAATATCTACGTCTTATCGAAATCCC---TTAATAATCTCCACTTTACCTAGTTTCTTGCTGTTTCCTGCCAACATGTAAATATAGAAAAAG
s cb4.chrX              11408365  89 + 21540570 atctaca-----acaggaaatg------------agaaaactcAACTCAATTTCctgcaatttttttagttcaatTGCATTTCAATTTAAT---TAATCTTCCGGAATA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3846244  88 +  4147112 I
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    159633 176 -  1189296 I
e caeRem4.Crem_Contig0   2312928  37 -  4500979 I

a score=-1181.000000
s ce10.chrX              5580859 48 + 17718866 --------AAACTAAGATACTACTATTTTTGAAGTCAAACATCTTCTAGTCATCCG
s cb4.chrX              11408454 37 + 21540570 TATTTCAAAAGCCattata--------tctgaaaaaaaacgactt-----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3846332 47 +  4147112 --------aaattatcatatctcattttctggaagaatataatttttgaaagtga-
i caePb3.Scfld02_0      I 88 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    159633 176 -  1189296 I
e caeRem4.Crem_Contig0   2312928 37 -  4500979 I

a score=5838.000000
s ce10.chrX              5580907 198 + 17718866 CAACTAATGTTACTCATCTGGATAAT-CTCTTGCCTCATTTTCAAGATG------TTTTTGTTTTTGTGCATTCCTTTAT-----TGA--------AAT-----GGAATCCGCTAATCTTCAATATCACCTTGACGAGAACAAGAT----------TTTCACCC--------TCGTTTTTGAACCAATGTTCTTT-----GATT----CTTGCC------------------------------TTTTTGCAGCAA--AAATGTGATTGTTAAAAACTT---TCT--------------
s cb4.chrX              11408491 229 + 21540570 ------aCGTTACTCATCTGGATTAT-CCCTTCTCTCT-------TTCGccctgttttttgtttttc--ctccCTCCATC-----TTC--------AAT-----GGAA-CCGCAAATCTATAATATCACCATGACACGtgtg--------------ttcaattt------ttctctcatcaCGTTCCCCCCGTT------TATT----CATTCATGAGTCGTGTTGCCTGACCATCTGTACTAAATTGAGCAAGAACCACCA--AAAGTGTTGGCGACA---GCCAGCTAGCATCACAt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2312965 264 -  4500979 CAACTTACGTTACTCATCTGGATTATCCCCTTCCCTCg-------gatg------tttttgtttttcatctttctccgtt-----ttcttgAATGAAAT-----AGAATCTACTAATCTTCAATATCACCATGGCACGAACAAGACAC--------TTCGCCTTTTTGAATTCATACGTTTTGTTCATCCTGCTGACGGATACTAACGTATTTATGGTGAATGTCTCATGATCTCATGCCAAAACTTTTATatcaa--aact--aaattttaagCATCATGTACTGTTTggctcttttt
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold626    159809 216 -  1189296 CAACTTCCATTACTCATCTGGATTAT--CTCTTCTTCg-------catg------tttttgttttccatcttcctccgtttttt-ttc--------aat-----agagtCTACTAATCTGTAATATCACCGTGACACGAACACAACTTGGTGGTGGTTCTTCTCATCATATCTGTTCCTCA---TGATCTTCTTT-----TAGT----CATTCAAG----------------CCCCGATTTTAGATCTATTTTCAA--TACA-------TTAGgaaatt---tct--------------
i caeSp111.Scaffold626  I 176 I 104
s caePb3.Scfld02_0       3846379 215 +  4147112 caACTTACGTTACTCATCTGGATTATCCCCCTCCTTCGGtc----tctg------tttttgtttttcatcttttccctctctttatTC--------AATGGAAGAGAATCTACTAATCTGTAATATCACCATGGCACGAATAcgac----------tttttctc-ttttagcTGCTTTTCGAATTTATATGTTCT-----TACT----AATTCA-----------------------TTCATGAGTCTTGTAACAA--TACA----ATTTTGACCAGTG---TCC--------------
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=-17821.000000
s ce10.chrX              5581105  78 + 17718866 ----------------CAGTTTTTTCTAAATTTTGTTAACAAACCCCCCCCCCCCCACATATGCAAAAAAAAAATAC-----TTAGGCATTC-----------------------------ATC------CACT--------------------
s cb4.chrX              11408720  75 + 21540570 ttgttttg----aagaaaaatttt-aaaggttttgaCAG-------------------------AAGCACAAAAACT-----CCACAGCCCC-----------------------TTTAAAACC------CAAAAC-GCG--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2313229 100 -  4500979 caatttta----aacgCGATTTTT----GGGTTTGTCTGCTC----CCTCACTCAC---TTtccaaatatgaaaaatgtctgccaaaactcc-------------------aaagcttaaaacc------caaaacaaaa--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3846595 137 +  4147112 ------TGAGCCAACATGAATTTT--AAAGTTTCATTAGTACGggttcccttcttt---ttctcaactcaaAAAGAT-----TTGAGATTTCACATCgaattcgttttgaaaaatattgaaagcgGTTGACAAAAT-CAACCTGACAGGCCACT
i caePb3.Scfld02_0      I 1 I 4
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    160025 104 -  1189296 I

a score=-45756.000000
s ce10.chrX              5581183 552 + 17718866  
s cb4.chrX              11408795 763 + 21540570  
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   2313329 478 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    160129 726 -  1189296  
i caeSp111.Scaffold626  I 104 C 0
s caePb3.Scfld02_0       3846736 742 +  4147112  
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=-7822.000000
s ce10.chrX              5581735 59 + 17718866 --------------------ACCGAAAATGCCATT--TTATTT----CCATAAATAAAAATGATGTTCAAAAACATTTACCACTT
s caeRem4.Crem_Contig0   2313814 63 -  4500979 --CCAGTAGGA-----CCCCATTCAATATGTCATTAATTGTATAACTACACTcataaa-------aacccaaaaatt--------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    160855 69 -  1189296 GCCAAAAACAA-----CTGAATTAACATTCACTTCAGTCCTTT----CCATTTGGAAA-------GACAAGCACATTTATCACct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3847478 76 +  4147112 gacaaaaacaaaaaatctcgattgggttttccttttgttaatt-------tttgaaaaca--gcgGTTAAGACGATTTGTCACCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e cb4.chrX              11409558 21 + 21540570 I

a score=1830.000000
s ce10.chrX              5581794 6 + 17718866 CTTGTT
s cb4.chrX              11409579 6 + 21540570 ctcatt
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   2313877 6 -  4500979 ctcatt
i caeRem4.Crem_Contig0  C 0 I 54
s caeSp111.Scaffold626    160924 6 -  1189296 catcgt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3847554 6 +  4147112 CTTGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=-3107.000000
s ce10.chrX              5581800 72 + 17718866 ----CTTTTGCACA-----GCTCTC-----ATGTTCCATGTCAGCTGCTGTTTGGA------AAAAAAAA------ACCAAACTAACCCTAAGAAAAA
s cb4.chrX              11409585 82 + 21540570 -----ttttaaaaa-----gattatCATGTTTTTATCATGTCAGCTGTTATGAAACCAAGTAATGAACGCTATTTTGTTAAACTAAAACAAG------
i cb4.chrX              C 0 I 4
s caeSp111.Scaffold626    160930 63 -  1189296 tttttttctgctaa--CCTGAGcac-atcttttttctgcgTCAGTTGCCATGTGGC------AGGAAAAC------------CT--------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3847560 62 +  4147112 CTCCCCTCTAATAAATCCAGATCAC-----TTGTTCCACGTCAGTTGTTATGTGGC------AAGAACAC------------CTa-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeRem4.Crem_Contig0   2313883 54 -  4500979 I

a score=-119777.000000
s ce10.chrX              5581872 410 + 17718866  
s cb4.chrX              11409671 540 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2313937 471 -  4500979  
i caeRem4.Crem_Contig0  I 54 C 0
s caeSp111.Scaffold626    160993 192 -  1189296  
i caeSp111.Scaffold626  C 0 I 61
s caePb3.Scfld02_0       3847622 246 +  4147112  
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=-6023.000000
s ce10.chrX              5582282 55 + 17718866 AGCACTTACTTAATCATTAATCTTTTTGTTTTTGTTATTGTTAACTTTCAATAAT-------------------------
s cb4.chrX              11410211 66 + 21540570 AGCGGCATC-----CACTGATCTCTAGT---------TTCTTTCCTTTCACGACCTAATCTGTCTGCTGATCGCCAGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2314408 66 -  4500979 aggAGTGTCTTCGTCACTGATCCTTAG--------------TACTTTTTAAGACCTAATCTGTCTGCTCATGGTCACAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3847890 22 +  4147112 -------------------------------------CCATTTGCTTTCATTATCCCAT---------------------
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I
e caeSp111.Scaffold626    161185 61 -  1189296 I

a score=-26360.000000
s ce10.chrX              5582337 105 + 17718866 ---------------------TTTATCCTTTATTCTAACGACCAATTTCCATTT----TTCCAGCATACTTGTATCTTTTGTTCAAGGTATTTTC------------CGTGTCTTCCAATCAAAA--------AATGTGAAGAAAAATCA
s cb4.chrX              11410277 124 + 21540570 GTTATTTTCT--TAATATTCGTTtgccttt--tccttt-------tttctgtcaCTCCTCCCAAAA-------ATCCCTTattcttattatttttctttgga-----CACATGTTCTGGATGTCATGTCC---AATTTgaacaaacaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2314474 129 -  4500979 GTTATTTGATAACAATGATCATTTGC------TTCTTTGG----ATTTCCATAGTTATTCTTTGTC-------ATCCTTTGTTATT----TCTTGCTTTTGAAGAAGCacgttcttcaaaaaacaaggcctgtaatttctcgaaaaaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    161246  77 -  1189296 ---------------------TTTATC----------------------TGTTA----TCTTGGACT-----AATCCATTGATCAA------TGACACTAGA-----ACTTCCttcttgaattca--------aattctggaaaacaa--
i caeSp111.Scaffold626  I 61 C 0
s caePb3.Scfld02_0       3847912  75 +  4147112 ---------------------TTTATCT----CTCTTGTG----GCTTATGTAA----TCCTGGACT-----TTTCCTCTATTCAA-----------------------------CCAGACttga--------aatcatggaaaaaaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   758164 1976 +   823664 I

a score=240846.000000
s ce10.chrX              5582442 595 + 17718866  
s cb4.chrX              11410401 557 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2314603 577 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold626    161323 564 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3847987 549 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760140 528 +   823664  
i caeJap4.Scaffold18194 I 1976 C 0

a score=-7429.000000
s ce10.chrX              5583037 35 + 17718866 TCAA--AAACTCGCGCAG--GCACTATAAATTTTTTGCA
s cb4.chrX              11410958 30 + 21540570 -CAACAGCATTAGGAAAA------TACTGATATTCTT--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    161887 35 -  1189296 --aaagacaTTAGGGaag--agatttcgaaatttattgA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848536 28 +  4147112 --aa-------agtgaag--aattcACATAAATCATTAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760668 37 +   823664 TTAA--AACATAGAAATGTCAATTAATCAAAATTGTGCA
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2315180 39 -  4500979 I

a score=-1271.000000
s ce10.chrX              5583072 7 + 17718866 AA-TTGCA
s cb4.chrX              11410988 7 + 21540570 AA-TTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2315219 7 -  4500979 AA-TTGCA
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold626    161922 7 -  1189296 -ACTTGCA
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3848564 6 +  4147112 -A-TTGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760705 4 +   823664 --TTTA--
i caeJap4.Scaffold18194 C 0 C 0

a score=2000.000000
s ce10.chrX              5583079 2 + 17718866 GG
s cb4.chrX              11410995 2 + 21540570 GG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2315226 2 -  4500979 GG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3848570 2 +  4147112 GG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760709 2 +   823664 GG
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    161929 2 -  1189296 I

a score=90002.000000
s ce10.chrX              5583081 78 + 17718866 TAGTGCAAGAGTACGAAAGAGCTGTTATCTTCCGACTTGGTCGCCTGATGCCAGGTGGTGCAAAAGGACCAGGTTTGT
s cb4.chrX              11410997 78 + 21540570 TGGTCCAAGAGTATGAAAGAGCTGTTATTTTCCGTCTTGGTCGTCTCATGCCAGGTGGCGCCAAAGGACCAGGTTAGT
i cb4.chrX              C 0 I 117
s caeRem4.Crem_Contig0   2315228 78 -  4500979 TAGTTCAAGAATATGAGAGAGCTGTTATCTTCCGTCTTGGTCGTCTCATGCCAGGTGGTGCAAAAGGACCAGGTTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    161931 78 -  1189296 TGGTCCAAGAGTATGAAAGAGCAGTCATCTTCCGTCTTGGTCGTCTTATGCCAGGTGGCGCAAAAGGACCAGGTttgt
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3848572 78 +  4147112 TGGTCCAAGAATACGAAAGAGCCGTTATCTTCCGTCTCGGTCGTCTTATGCCAGGTGGTGCAAAAGGACCAGGTTTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760711 78 +   823664 TAGTTCAAGAATACGAGAGAGCAGTCATATTCCGTCTTGGTCGTCTTATGCCGGGTGGTGCAAAAGGGCCAGGTAAGT
i caeJap4.Scaffold18194 C 0 C 0

a score=-1384.000000
s ce10.chrX              5583159 9 + 17718866 ---TATTTTATG
s caeRem4.Crem_Contig0   2315306 5 -  4500979 -------TTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    162009 9 -  1189296 ---tattttatt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848650 9 +  4147112 ---TATTTTATG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760789 9 +   823664 CGCCAGCTG---
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              11411075 117 + 21540570 I

a score=-11723.000000
s ce10.chrX              5583168 91 + 17718866 ACTTGAGAGCTAATGGACTCGTTCTTCTCGTTCTCAAAGATCAGAAATTATTTTAATCGTGG---------GAGAGGGATAGGTTGCAAATGAAAAAGTG
s caeRem4.Crem_Contig0   2315311 72 -  4500979 GCTTTAGGGCTAATGGATTT---------CCTGCAAGAAATTTGAGGGGATTTCATTTGTTT-----------GGGGGACCGATGTGAAATG--------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3848659 21 +  4147112 ---------CTACTGGGATT--------------------------------------------------------------ATGGGAGTTG--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   760798 73 +   823664 ----------AGACGAGGTG---------CAGACCGAAAATGCATGAAAATAGCGTGCGTGAGGAGAACGTGGCAGAGAGAGTgagaaagcg--------
i caeJap4.Scaffold18194 C 0 I 141
e cb4.chrX              11411075 117 + 21540570 I
e caeSp111.Scaffold626    162018  0 -  1189296 C

a score=-5700.000000
s ce10.chrX              5583259 113 + 17718866 ACTTTTTTGTTTTTTTATTTTAGAAAATTTTGATGGAATAGTGGGCAAGTTTAGAAAAAAAATTTATTGAATCAAAATAATTAAATCCGCAAATTCAAAATTACTATTTTGTA
s caeRem4.Crem_Contig0   2315383  48 -  4500979 -----------------TTTTCGACAA-----------------ACAAgcctaaaatttaaaat----------------ttaaatc----gGTTCAAGACT-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3848680  32 +  4147112 -------------------------AA-----------------ACTA---TATAATGTGAATT----------------TT--GTC----AGTTTGAA--------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   760871 141 +   823664 I
e cb4.chrX              11411075 117 + 21540570 I
e caeSp111.Scaffold626    162018   0 -  1189296 C

a score=-6719.000000
s ce10.chrX              5583372 52 + 17718866 TTTGCTTGTTTCTTTTGTTAGAATTTAATAACTCATAAAAATTTATTTTTTA
s caeRem4.Crem_Contig0   2315431  7 -  4500979 ---------TTTGCt----------t--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    162018 23 -  1189296 ---------tttgtt----------tgctAATGCA--------TGTTTTG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848712 50 +  4147112 TATGAtgggtttttcagaaaaactgtaaTAACTCATCGAG--TTGTTTTCTG
i caePb3.Scfld02_0      C 0 I 64
e caeJap4.Scaffold18194   760871 141 +   823664 I
e cb4.chrX              11411075 117 + 21540570 I

a score=-5971.000000
s ce10.chrX              5583424 85 + 17718866 CATCAAATAAACTAATATCTGTAAATCGAACATATCTGTAGTCATTGAACGTTTATTTTACTCTACAAAGTAAGGAACTTACCAG
s caeRem4.Crem_Contig0   2315438 48 -  4500979 ---tcaat----------------tttgaatctgaCTATGGTTGACAGCTGGTGATTTTAATTTGCG------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    162041 32 -  1189296 ----AAGT----------------ACCAACTAGTAGGAAAGGGGCCAACTAg---------------------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3848762 64 +  4147112 I
e caeJap4.Scaffold18194   760871 141 +   823664 I
e cb4.chrX              11411075 117 + 21540570 I

a score=-2118.000000
s ce10.chrX              5583509 42 + 17718866 AATTTTCATTAAGTACGGCTTTGTATACGTGTATTTCATGCT
s caeSp111.Scaffold626    162073 10 -  1189296 --ttttcttc------------------------------ct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848826  7 +  4147112 aattttc-----------------------------------
i caePb3.Scfld02_0      I 64 C 0
e caeJap4.Scaffold18194   760871 141 +   823664 I
e cb4.chrX              11411075 117 + 21540570 I
e caeRem4.Crem_Contig0   2315486  0 -  4500979 C

a score=-23936.000000
s ce10.chrX              5583551 122 + 17718866 CATAGTCAGTAGACTAATATCTAATTTAATCTGTATTTTTGAAATAATTAGAACTATTGTG---CTTGCTATTATCAATGTTATTTTAAAAATCAGCATTTCCTTTCATTCAAAACGTTTTCCAT
s caeRem4.Crem_Contig0   2315486  74 -  4500979 -----------------------------TCCTTTTTTGAAGACTAAAAGAAAACGTTTTA---TATACATAGTTGAAAACTCtttcaaaactca---------ctctttcaaaa----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    162083  71 -  1189296 cat----------------tctGAACCAGATTcgatatgaaaaaatagcacaaatattttgatccatgaaaagcagaaaattGTGTT--------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848833  60 +  4147112 ----------------------gaatgaattaTAGTTTGTAGAACTCAATCTAGAGTTGTG-----TGTCAATTTCAATATCATGCT--------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   761012  43 +   823664 -------------------------------------caAAACGAAACGGCCAGCATCTAg------atcaaaataaatatttaat---------------------------------------
i caeJap4.Scaffold18194 I 141 C 0
e cb4.chrX              11411075 117 + 21540570 I

a score=278065.000000
s ce10.chrX              5583673 345 + 17718866 TTTCAGGTATATTCTTCATTGTCCCATGTATCGACACATACCGAAAAGTTGATCTTCGTGTGTTATCATTCGAAGTGCCTCCACAAGAGATTCTATCAAAAGATTCCGTGACAGTCGCTGTCGATGCTGTCGTTTATTTCCGAATTTCTAACGCAACGATTTCGGTTAG-AAC-----------GTTTCCAATTGTTATTTCTCGATTTTTACCTGATT-----------------------------------------------TTTTTAGGTGACAAATGTCGAAGATGCCGCTCGATCCACTAAACTTCTGGCTCAGACTACTCTTCGTAACATTCTCGGAACCAAAACTCTCGCTGAAATGTTGTCGGACAGAGAAGCTATTTCTCACCAGATGCAGGT
s cb4.chrX              11411192 392 + 21540570 ttCTAGGAATCTTCTTCATTGTCCCTTGCATCGATACCTACCGAAAAGTTGATCTTCGTGTTTTGTCTTTCGAAGTCCCACCCCAAGAAATTCTGTCCAAGGATTCTGTGACTGTCGCTGTCGATGCTGTTGTCTATTTTCGAATCTCCAATGCTACAATCTCGGTGAG-AAC-----------TTTTTTAGATGCAAAACCTTTGAGTTCAATAACatcattatttcaaaaaaaaacgcagtattttcaaattccaactCATTGTGTTTTAGGTCACCAATGTCGAAGACGCCGCTCGCTCCACGAAACTCCTCGCTCAAACCACCCTTCGCAACATTCTCGGAACCAAGACTCTCGCCGAAATGTTGTCCGACAGAGAAGCCATCTCTCATCAGATGCAGGT
i cb4.chrX              I 117 I 9
s caeRem4.Crem_Contig0   2315560 367 -  4500979 -tttaggtATATTCTTCATTGTTCCATGCATTGACACCTACCGGAAAGTTGATCTCCGTGTCCTTTCATTCGAAGTCCCTCCACAAGAAATTTTGTCAAAAGATTCTGTAACTGTTGCTGTCGATGCTGTCGTTTACTTCCGTATTTCTAATGCAACTATCTCGGTGAG-TACTAAAACA---ATGTTTTAGTTG------CTCTGTTTTCACTTAAAT---------AACAACAAATGCTAGTTTTTC-----------------TTTCCAGGTCACCAATGTTGAAGACGCTGCTAGATCCACAAAACTTCTTGCTCAGACTACTCTTCGTAACATTCTCGGAACTAAAACTCTCGCTGAAATGCTCTCAGACAGAGAAGCCATTTCTCATCAAATGCAGGT
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold626    162154 340 -  1189296 CTTCAGgtattttcttcattgttCCCTGCATTGACACCTACCGTAAAGTTGATCTTCGTGTCTTGTCTTTCGAAGTTCCACCACAAGAAATCTTGTCCAAAGATTCTGTGACTGTTGCTGTCGACGCTGTCGTCTATTTCCGTATTTCTAATGCTACTATCTCGGTAAGCAGCTTTAACG------------------------------CTTTTTCGT------------ACCAGTCGTCATATT----------------------TCTAGGTTACCAACGTCGAGGATGCTGCCCGCTCCACTAAACTTCTTGCCCAAACCACTCTTCGTAACATTCTCGGAACTAAGACTCTTGCTGAAATGTTATCCGACAGAGAAGCTATTTCTCATCAAATGCAGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3848893 376 +  4147112 TCACAGGTATCTTCTTCATCGTCCCATGCATTGACACCTATCGGAAAGTTGATCTTCGTGTCCTTTCATTCGAAGTCCCACCACAAGAAATTCTTTCCAAAGATTCCGTAACCGTTGCTGTCGATGCTGTCGTCTATTTCCGTATTTCCAATGCTACTATCTCCGTAAGTTACTTTAACAAATTTCTATTAAATG-------TGTCTATTCATCTACTT------------TCAAATCGTTAAATTTTA---------TCCTCTGCTGTTCAGGTCACCAATGTCGAAGACGCTGCCCGATCCACCAAACTCCTTGCTCAAACCACTCTTCGTAACATTCTCGGAACCAAAACCCTTGCCGAAATGCTGTCCGACAGAGAAGCCATTTCTCACCAAATGCAGGT
i caePb3.Scfld02_0      C 0 I 74
s caeJap4.Scaffold18194   761055 295 +   823664 tttcaggTATCTTCTTCGTTGTTCCGTGCATCGACACTTACCGCAAAGTGGACCTTCGTGTCCTATCATTCGAAGTTCCACCACAAGAGATTCTGTCAAAAGATTCCGTGACGGTTGCCGTCGATGCAGTCGTCTATTTCCGCATCTCGAATGCCACAATTTC-------------------------------------------------------T------------------------------------------------------GTGACAAACGTCGAAGATGCTGCTCGTTCCACAAAACTTCTCGCACAAACCACACTTCGTAACATTTTGGGAACAAAAACTCTGGCAGAAATGCTCTCGGATAGAGAAGCCATTTCGCACCAGATGCAGGT
i caeJap4.Scaffold18194 C 0 C 0

a score=-16423.000000
s ce10.chrX              5584018 55 + 17718866 TGGTAA------------------TTTTTGAATT-------ATCCAACGTTTAAGAACTGAATTTTCAATAATCA-TAGCA-
s cb4.chrX              11411593 22 + 21540570 TGTCAG-----------------------------------GTACAGTACTC------------------------TCCTA-
i cb4.chrX              I 9 I 10
s caeRem4.Crem_Contig0   2315940 59 -  4500979 TATCAGAAATCCGTAGTCGTCATATTGTTGTATT------TGTACGTTATTC---------------AATAAATA-TCCTA-
i caeRem4.Crem_Contig0  I 13 I 5
s caeSp111.Scaffold626    162494 39 -  1189296 ------------------------TTGTT------------TTActgtatttcaaaattga------aacaaacaGTTTTA-
i caeSp111.Scaffold626  C 0 I 11
s caeJap4.Scaffold18194   761350 50 +   823664 --------ATGCacatacaaaaaaattttggattgtttgtttcactattttt------------------------tttcaa
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3849269 74 +  4147112 I

a score=252757.000000
s ce10.chrX              5584073 314 + 17718866 TTTCAGACAACGTTGGACGAGGCTACAGAGCCTTGGGGAGTGAAAGTAGAGAGAGTTGAGGTGAAAGATGTTCGTCTACCAGTTCAACTTCAAAGAGCTATGGCTGCCGAAGCTGAAGCAGCTCGTGAAGCAAGAGCTAAGGTATTCC--AGCTTCAGTGAAAAAATAATTTGAACTGTTTCAATTA----------AGGTAATCGTCGCCGAAGGAGAACAAAAAGCCTCTCGAGCTCTTAAAGAGGCAGCTGAAGTCATTGCTGAAAGCCCATCTGCTCTTCAGCTTCGTTATTTGCAGACACTGAACAGTATTTCGTGAGTCA
s cb4.chrX              11411625 268 + 21540570 tttcagacaactttGGACGAGGCTACTGAGCCATGGGGAGTGAAAGTCGAGAGAGTCGAAGTCAAGGATGTTCGTTTGCCAGTTCAACTTCAGAGAGCGATGGCTGCCGAAGCTGAAGCCGCTCGTGAAGCTAGAGCCA----------------------------------------------------------AGGTTATTGTTGCCGAGGGAGAACAGAAAGCTTCCAGAGCTTTGAAGGAAGCTGCTGAAGTTATTGCCGAGAGCCCATCTGCTCTCCAACTCCGCTATCTACAAACCTTGAACAGTATCTCGTAAGAAT
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2316004 317 -  4500979 TTGCAGACAACTCTGGATGAAGCTACTGAGCCATGGGGTGTAAAAGTCGAGAGAGTCGAAGTTAAAGATGTCCGTTTGCCAGTACAACTTCAACGTGCGATGGCAGCTGAAGCTGAAGCTGCTCGTGAAGCTAGAGCCAAGGTAGGA---------ACTTTTCGGCTATTAGCAATTATTACTGAACTACAATTCTCAGGTCATTGTTGCCGAAGGAGAACAAAAAGCGTCCCGTGCACTCAAGGAAGCTGCCGAAGTCATTGCTGAAAGCCCATCTGCTCTTCAACTCCGTTACTTGCAAACATTGAACAGTATTTCGTAAGTTA
i caeRem4.Crem_Contig0  I 5 I 38
s caeSp111.Scaffold626    162544 307 -  1189296 ------ACAACTTTGGATGAAGCTACTGAGCCATGGGGAGTTAAAGTAGAACGTGTTGAAGTGAAAGATGTCCGTCTACCAGTCCAACTTCAAAGAGCTATGGCTGCTGAAGCTGAAGCTGCTCGTGAAGCCAGAGCTAAGGTAACAC--AAAAATACAATGAACTTGTGATTAAAGGTATCATAT-----------AGGTTATTGTTGCCGAAGGAGAACAAAAGGCGTCGAGAGCCCTCAAGGAAGCTGCTGAAGTCATTGCCGAGAGTCCATCTGCTCTTCAACTCCGTTATCTTCAAACCTTGAATAGCATCTCGTatgttt
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       3849343 313 +  4147112 TTTCAGACCACTTTGGATGAAGCCACTGAGCCATGGGGAGTGAAAGTAGAGAGAGTCGAAGTGAAGGATGTCCGTCTTCCAGTTCAACTCCAAAGAGCTATGGCTGCCGAAGCCGAAGCTGCTCGTGAGGCCAGAGCCAAGGTATGAA--ATATGGATTTTGAATATGATACTGAAGGCGACTTAT-----------AGGTTATTGTTGCTGAAGGAGAACAGAAGGCATCTAGAGCTCTCAAGGAAGCTGCAGAAGTTATTGCCGAGAGCCCATCTGCTCTTCAACTCCGTTATTTGCAAACTTTGAATAGCATTTCGTAAGTTT
i caePb3.Scfld02_0      I 74 C 0
s caeJap4.Scaffold18194   761400 312 +   823664 tttcagaccACCCTTGACGAAGCAACAGAGCCATGGGGAGTGAAAGTGGAGCGAGTTGAAGTCAAGGACGTCCGATTGCCAGTTCAGCTCCAACGAGCTATGGCAGCTGAAGCTGAGGCTGCTCGTGAAGCTAGAGCTAAAGTTGGTCCAAAATTGAGAGttcagagagaaaaaaagttaaaattt-----------aGGTTATTGTTGCCGAGGGAGAGCAGAAAGCGTCGAGAGCGCTTAAAGAAGCTGCTGAGGTGATTGCTGAGAGCCCATCTGCACTGCAGCTTCGTTATTTGCAAACCTTGAACAGCATTTCGtatg---
i caeJap4.Scaffold18194 C 0 C 0

a score=-9701.000000
s ce10.chrX              5584387 35 + 17718866 CCTTGAAA---CTAATGTTTGG--------CATTTCTATGATAATT
s cb4.chrX              11411893 35 + 21540570 CTATTAAATTCTTGAttgctaa--------aaaatgaaaaata---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    162851 27 -  1189296 -----------cattctttcag--------aacctttattaacttt
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3849656 35 +  4147112 ---TCACAGGCTAAACTTTTAG--------AAATTATACATTCTAA
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18194   761712 44 +   823664 --ttgaaaatttttggttgtaGTTTTACTTATCTTTAATGATATGT
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2316321 38 -  4500979 I

a score=101944.000000
s ce10.chrX              5584422 178 + 17718866 TTTCAGAGCTGAAAAGAACTCAACGATTATATTCCCGTTCCCAATTGATCTTCTCAGTGCATTCCTCCAACGAACACCGCCTAAAGTGTAAGTT----------------TT--CACAGAGTATTCGACAA---AAAGCACAATCTATTCC-------------------TATC---------AAATTGCAGTGATAACAATTTTGCATTTCCAACGCACAAAGCTG
s cb4.chrX              11411928 216 + 21540570 tttcagtgcTGAGAAAAACTCAACCATCATCTTCCCATTCCCAATCGACCTTCTGAGTGCCTTCCTTCAACGTACCCCACCAAAAGTGTAAGCTTAACTTTTCTTCTTAATTGTTTGAGTGATTCGTTGGC---Tt----tcattttgaattcgaaaataatgaaaagaaTATCAAATC----CAATTGCAGTGATAACAATTTCGCATTTCCAACACAAAAATCCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2316359 190 -  4500979 ttttagtGCCGAGAAAAACTCAACAATCATCTTCCCATTCCCGATTGACTTGCTGAGCGCTTTCCTTCAACGACCTGCAGCAAAAGTGTAAGTTTaa-----------------taaaaaactttgtttGC---TTCAAATCACTTTGCTTTT-----------------TattcattcttttcaattgCAGTGATAACAATTTTGCATCACAACAACAAAAAGCCG
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold626    162881 180 -  1189296 tttcagcgCTGAAAAGAATTCAACTATCATCTTCCCGTTCCCGATTGACTTGCTCAGTGCGTTCCTTCAACGTACACCACCAAAAGTGTAAGTGTACAACTGTTTGCT--TC--CAAGAAGCAGT------------------TTTTGCTA-------------------TTTCCAT------TAATTGCAGTGAGAACAATTTTGCATTCCCAACGCACAAAGCCG
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3849696 197 +  4147112 TTTCAGTGCCGAGAAGAACTCCACCATCATCTTCCCCTTCCCGATCGATCTTTTGAGTGCCTTCCTTCAAAGAACACCACCAAAAGTGTAAGTTAATATCCGCTTGTTTGTC--TCACAAGTTTTCAGAGC---TTCGGACAATTTTACCG-------------------TATCCAA------TATTTGCAGTGATAACAATTTTGCATTCCCGACGCACAAAGCCG
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18194   761756 191 +   823664 ATTCAGAGCTGAGAAAAACTCAACAATCATCTTCCCATTTCCAATTGACCTTCTAAGTGCCTTCCTTCAACGGACGCCTCCAAAAGTGTAAGTTGGAacttgt-----------tgaaaatttttatttacaaattgaaACAAATGGATTT-------------------CATTTCA------CAATTGCAGTGATAGCAGTTTTTCATTCCCAATGCAAAAAGCTG
i caeJap4.Scaffold18194 C 0 I 25

a score=5718.000000
s ce10.chrX              5584600 7 + 17718866 GCGGAAT
s cb4.chrX              11412144 7 + 21540570 GCGGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2316549 7 -  4500979 GTGGAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    163061 7 -  1189296 GCGGAGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3849893 7 +  4147112 GCGGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   761947 25 +   823664 I

a score=49632.000000
s ce10.chrX              5584607 353 + 17718866 ACCGTCTTCCTCTTGAACACTTCAC--GAATTCAAAATTCATTGACATGCGTGTGATCAGCCAA----TTTCAT-------------------------------------TTTTCCACATCGCT-----TTGAG------TGACCTCAC----ACCC------ACTGATAA-TAATTG--TCTTACTGCTTCATTTCCATTTTTCTCAAATTCCACATAGGAGCGTTAGAGTTCCATTCA---ACTGGT---AACA-GTCACACAAAAACACAAACTTC--CCTCTGAACAAAAACATAGTCATAATCGTTTGCTG----AGTAATCTCGGTGT----------------------ATCGTCAAATTCAA--------CCAACCCAT-CCTGT-A-AATCCTCCTGTCCTGTCT------TTTCAATAGCTCTTTTTGACAGTAACATTTCATGTTTTG---AAAAATGTGATA
s cb4.chrX              11412151 334 + 21540570 CCCGTCCACTTCCTGAACACTTCACCAG------------CTTCACACACGTGTGATCAATTGATGCTTTCTTT-------------CTTgtactttccaatttttttccattt----caacttt-----t-------------ccacAT----CGCT------------------TTGACCCTCAAATTCTCACCTCC---ATCCAGCATTTT-------------GAGTGTTCCAAAGACGCACTGGT---ACTATAAAACCTACAAATTCGACCTTT--CCTCTAA--AAACACATAGTCAATATCGTTCACTG----AGTAATCTCGGTG-----------------------------AAATCATC--------CTACCACcc-attataatttttttcctgtccTGTCCATTTTATATTACC--T-TTTCCTGACAGTAACatttcatgttttt----taaaTGTGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2316556 358 -  4500979 ACCGTCTTCATCTTGAACACTTCAC--G------------CTTCACACACGTGTGATATTCCAAAGCTTTCCAT-------------CATTTCTTCTCTGAATTCATCTCATTTCTCACATCTTT-----TTGAG------TGACCTCAT----CTTTcacaaaccaaaaaa-aaatcgaattttaatattttttcccC---TTAAATAATTTCAACAAGGAACATAGAGTGTTCCAAAGA--CACTGGT---CATA-ACAACTTACAAAT------TTT--CCTCTTG--AAATACATAGTCATTATTTTTAACTG----AGTAACATCGGTG-----------------------------AACCCATT--------CAATCCCTT-CCTGT-ATGTTTTCCCTGTCCTGTcc------tattatt--tcttttctgacAGTAACatttcatgttttg----aaaatgtgata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    163068 374 -  1189296 accgtcttcttcttgaacACTTCAC--G------------CTTTACACATGTGTGATCAATTATTGCTTTTTcttaaatatttgaaaaatataatt----acATATTCCCACTTTTCACATCGCT-----TTGAA------TGACctcaa----attccaaaaaacccaaaa-actcCGATCTTTATATTTTAACACC-----TGAATTTGTTCAATAAGGAGCAGTGACTGTTCAAACTA---ACTGGTAACAACA-GTAATTCCCATTC------AAT--CCTCTGG--AAACACATAGTCATCATCATTAACTG----AGTAATCTCGGTG-----------------------------AACTTCCTTTGAACAACAGTCATATACTTTC---ATTTACTCTGTCCTTTC-------TATTATT--CCTTTTCTGACAGTaacatttcatgttttt---ttgaatgtgatA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3849900 351 +  4147112 ACCGTCATCTTCTTGAACACTTCAC--G------------CTTCACACACGTGTGATCAATCAACGctttttcc---atgttttattcacaatattttgaacatattCCCACTTTTCACATCGCT-----TTGAG------TGACCTCaattcttttccgaaaaaccaaaaacagttCGATC------TTGTAAAA-------------TATTCAACAA-----AACTTTTGTTGAGAGT----ACTGGT---AACA-GTAACTTACAAAC------AATGCCCTCTTC--CAACACATAGTCATTATCATTTACTG----AGTAATCTCGGTG-----------------------------AAATACTT--------CAATCCCAC-CATGT---ATTTTTTCTGTCCTGTCT------TATAATT--CCCTTCTTGACAGTAAcatttcatgttttg---aaaaatgtgata
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   761972 369 +   823664 acCGTCTTCATCTTGA--AATTCAC--G---------CTGCTGCACACATGTGTGATTAAAAAATgctttcact----------------------------attttttgacTT-TCACATTGTTGTAtattgagcttttttttcctcac----CTAC----ACTTTGGAAA-TATACGCCCTTGTGCTCGATATACAC----TGGTATTATTCA------------CAGTTTgcaaatgc---aaaagc---aaaa-gcaaaacaaaaaccaaaacaaa--cctctcc--aaa---aTAGTCATAATCTTCGGCTGAGCTAGTCATCTCGGTACACGTCCCGTTttcgaatttccaattttcaactGTCC--------TTACCCAAT-CTAAT----CTTACCCAATCTCGCCC------TGTAATT------TTCGAATTGTAacatttcatgtttttttcttaaatgtGATA
i caeJap4.Scaffold18194 I 25 I 70

a score=-15133.000000
s ce10.chrX              5584960 101 + 17718866 AACC---TTCGATCCCCCAAACACTTCTTTTCAATTC-----TTTTGAAGAATGTTCAATACAAATT------------TAACATTGAATCTTATAAGCTTT----TTTTCACAAAAAAC--TTGAG
s cb4.chrX              11412485  87 + 21540570 TGAG-TTTTCGATCCCTCA---TCTTTc---------------cgtcgaaaaaaaacaat--aatctGCTTTCAA----AGTCATTTAGCTT-----GCTTT----------ATACCATCCACCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2316914 102 -  4500979 taA---CGTCCATCCTCCA---ACTTTC--------------Ttattacaaattttcaatg-gAATTACTTTCTATT--TGCCATTCAACTTTAATAGCTGGCT--TTTTCAATAGAAACTCCCGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    163442 114 -  1189296 TGCATCTTCCCATCCCCTA---ACTTTCCTTCTACTCCTTATTCTTCCAGACTATTCCA---AAACTGCTTTCAAGT--GTTTATAGAACTC-----TTTCTgtaatttctaaaatatcTGTTCAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3850251 109 +  4147112 tgCA---CCCGATCCCCT----actttcttcttcagtttttttccgtgAGAATATTCCA---AAACTGCTTTCAAATTCAGATATAGAATGC-----actcttcaaatttgaa---attcatccGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   762341  70 +   823664 I

a score=16897.000000
s ce10.chrX              5585061 176 + 17718866 TTATATATA--GATTATCAA----CTTTCTT-----ATTTCTTTC----------AAATAA-TC-CCTT--------ATCCATTATTT-TT-CAATGAATTTTATCATATCATTG-------------CTTACTGATTTGGCATTTTCTTCT---TGAAATTCGACACCAACACTGGGTAATACATGTTGTTCTCGCACAAAGAGTATCGTATGTT--G------------------------------CTTCGACT-
s cb4.chrX              11412572 226 + 21540570 TCTCATCAT--AGCTTCAAT----ATgttctgttcattttttttataacAATTTCCGATAA-TC-CCTT---TCGCCACACATTTTTTCTC-CAATGAACAGTCTCATATCATTTTGCACTGA-----ATCACTGTTTTGGATTGGCTTACAACTTGAAATTCGACACCTACACGGAGTACTACA-GCGTTTG-----------AAGTCATGTGTT--GTCTTTGGAGATTCAAAAGCACTGATGCTTCCTTAGATA-
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2317016 200 -  4500979 TCTCTTTAT--GATTTTACA----TTTAAttgtacaatttttttg----aatgttcaaTAT-TC-CCTCA--CCAGcacatacttttt-tt-caatgaactgTCTCATATCATTGT-CACCGA-----ATCACTGTTATGGATTGGCTTACA---TGAAATATGATACCTACACCGAGTATTACATGTTTCTGCAACAGAAAATAAGTCATGTGTG--G------------------------------CTTTGACT-
i caeRem4.Crem_Contig0  C 0 I 123
s caeSp111.Scaffold626    163556 210 -  1189296 --CAGTAGT--GTTTTCAAA----CATTGCTAAATAATC-CTATacataaatttaaaatacaTC-CCTGAAACCAGcacaaacatttt-ttccaatgaacAGTttcatatcatttttcacagaAT---ATCACTGTTTTTGCTTGGCTTACA---TGAAATCGGACACCGACACAGAGTATTATATGTTTCTTCCGTTGGAAGGGAATCTCGTGTGCAG------------------------------CTTACACT-
i caeSp111.Scaffold626  C 0 I 169
s caePb3.Scfld02_0       3850360 200 +  4147112 ---AATAGTCCAACTTCAAGTTgccattctcaaaaaatctctctA---ACATTCAATATTC-CC-CTTCACTAAAGcacatacatttt-tt-caatgaattttttcatatcattGTCATTCGA-----ATCACTGTTTTTGCTTGGCTTACA---TGAAATATGACACCGACACAGAGTATTATATGTTTCTTCCGTAGAGAAGAAGTCATGTGTG--G------------------------------C--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   762411 167 +   823664 -----------------------------CTGTATATCCATTGTC-----ATTTTGTAGAC-TAGACTTGCGTCTGCACCTA---TTT-TA-CAATGAACAATTTCATATCATTGA-TATTGATTGTCGTCGCTGTTTTTGGATTGATTTCTAG-CGAAATTCGACACCAACGCCAAGTGTTATA--CTTATA---------------CATATGTT--T------------------------------CTGAGATTT
i caeJap4.Scaffold18194 I 70 C 0

a score=-143.000000
s ce10.chrX              5585237 7 + 17718866 CGCCACA
s caeJap4.Scaffold18194   762578 7 +   823664 TGGCGGG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3850560 0 +  4147112 C
e cb4.chrX              11412798 6 + 21540570 I
e caeSp111.Scaffold626    163766 169 -  1189296 I
e caeRem4.Crem_Contig0   2317216 123 -  4500979 I

a score=-8046.000000
s ce10.chrX              5585244 56 + 17718866 -------------CTGCTTTTCTCAAATGGATGAAACATTTTCGAAAATTGGAAAACCTAAAC---------------CGCATA
s cb4.chrX              11412804 60 + 21540570 ---------------------ATGGATTGAATGG---GTTGACCAAATTtgaatgactgaaaattttttttaaaaaatcgcata
i cb4.chrX              I 6 N 0
s caePb3.Scfld02_0       3850560 23 +  4147112 -------------------------ACTGAATG---------CAAAAGTTGAA-------------------------CACA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   762585 69 +   823664 TAGATTTTCAAAGATGAAAttggaaacgaaacgaaacaaaaTCAGATGCGAGAAAACAAGAAA---------------TACATA
i caeJap4.Scaffold18194 C 0 I 60
e caeSp111.Scaffold626    163766 169 -  1189296 I
e caeRem4.Crem_Contig0   2317216 123 -  4500979 I

a score=-962.000000
s ce10.chrX             5585300 53 + 17718866 CGAGTGAGTGCAAAAATAAATTTGGCAACCACACTACAGCTTCGATTATCACT
s caePb3.Scfld02_0      3850583 24 +  4147112 CAAG---------ACATGAAATCAG------------------GAATATca--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  762654 60 +   823664 I
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-639.000000
s ce10.chrX             5585353 56 + 17718866 TCACAAAAAATAAAAACAGGGTCGACGAACTTTTTTGAACTGGCCAAAAACGTATT
s caePb3.Scfld02_0      3850607 37 +  4147112 ----agataatgaaaaaaaaat--------------gaaaggactGAAAAC-TATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  762714 53 +   823664 TCACAAAAgctttattcaaaatttgcg---TTTAATAaattgtacaaaaaaaaatt
i caeJap4.Scaffold18194 I 60 I 189
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-1577.000000
s ce10.chrX             5585409 191 + 17718866 CTAAAAATGTCAAACTCTTTAAATTGGAATATCACAAATTACGCATACTGAAATTTAATGAAGA--GCTATGCCGATAAAATGGAACTACAACTTATTTGACGCTTGTGTATTAAAGACACAATATTTCA-----AAAAAATTACGTTCACATTTAGATTAAAGGGTATCCTCAGTAGAAAACGTGTTCAAAACCTCT
s caePb3.Scfld02_0      3850644 118 +  4147112 CCAACA----------TTTGAGAATGTGATTTAATAG----------------TTTAGTAAAGACTGCAAAGCTAAT-----------------TATTTGA---------ATCAAA---ACAGtacttcatttgaaaaccagaaacttcaaatcaaGATGAA---------TTAGTAGAAAT----------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  762767 189 +   823664 I
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-3538.000000
s ce10.chrX             5585600 110 + 17718866 ACTATAGAGTAATGTTGGAAATTATTAAATATTTAC---AATTTTTCAAAATACTCTGTAATTTACCAAACCTTTCACTGAAAATTTTATCATAATGTTAATTGTCGACCAAC
s caePb3.Scfld02_0      3850762  59 +  4147112 -----------GTGGGGGAAACACCTGAATACAAAT---TACCTTTCTCAGCACTTT---------------Tgcaactcaaaatttt-------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  762956  93 +   823664 ATTATGGTGTCATCcag--aataatcagataatgattcgaatttctcaaaaaagt------------aaattttcgagtgaaaa------aataatttcattatccgacgaac
i caeJap4.Scaffold18194 I 189 I 143
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-94.000000
s ce10.chrX             5585710 157 + 17718866 AATTTGTTTCCAATGATTTATATGTTTACATTTTTAGCGTTTTGATAATTCCTATTTGAACATTACAATTGTTCAAAACTACATCAATGCTCGAAATTCCTTAGAATTTCGCATTTTCAGAAATTTGGCAATTTACCACAACTGTGATTGATTTTTT
s caePb3.Scfld02_0      3850821 112 +  4147112 ----tggctccaAACA-----------ACAATTTTAGA--CTTGATTGcttct------------cagatttttgaaaccac--------tcgt--tctctcaacttttcatcttttt-----tttgtatatttacCAGAA-GGTAacctagttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194  763049 143 +   823664 I
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-6234.000000
s ce10.chrX             5585867 179 + 17718866 CAAAAACATTT---CGAAAAATCAAAAATGTTTTGGGTTGGATAGTTTAAAAATTTGATCTTGTTAGACTATAAAAATATTTAGACTATATTCCCACTGACAATGCTTCAGATT---AAATCTTGTTATTAATTTCTACTTTTTACGCTTCTTAAGCACAAAAATACGAAAAAAAATCGTCAATT------
s caePb3.Scfld02_0      3850933  83 +  4147112 caaaa----------------------------------------tttactgatCCGGTCTT--------------CGATCTGAGCTTTAGGCTTATTGACAg----------------------------atgtttgattttta---------------aaaccac-----aaaatcttcaatt------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194  763192 144 +   823664 caaaaacaattcagcgaaaattcggaaa-----------------attatgggtctgaaatt------ttgcgaaatcatttaaaa---atactcccggacattctcagaaatttccaggccgaactattgatttttatttctga--------------aaatgttc-----aaaata--cgatttttttc
i caeJap4.Scaffold18194 I 143 C 0
e caeSp111.Scaffold626   163766 169 -  1189296 I
e caeRem4.Crem_Contig0  2317216 123 -  4500979 I

a score=-27177.000000
s ce10.chrX              5586046 163 + 17718866 AAAAAAAAATTAGAAATGATTTCTAATA-----ATATACTAAGAGC------GTTTTTTAATCTTGG---TATGTGTTGGAAATGAGATTCAATCAAATCTTCAAAAAA---ATCACAGGGAA--------CATTTTTGAAGTTT-----------------GTTTCATTTCACTGAAACACT----------ATTTTTTCATTGAATAGCAAGT-------------------------
s cb4.chrX              10889627 153 + 21540570 aaatgaaaattaaaaacagtGCGAAATA-----CAAGAGTTTTGGCA-AAGTTCATTTCAATCTCGA---CATGTGTTTgctata--------------caaaaaaaaa---gccaCATACCA---------ATTTCTGAG------------------------TTATTTCACGACGATTCT---AGGGAATAATCTTGCTCCAAACAGTGTGT-------------------------
i cb4.chrX              N 0 I 14
s caePb3.Scfld02_0       3851016  83 +  4147112 ---------------------ccGAAAA-----CCACATCATTGGC---------------TCACGACACCATGCACTTTCTCTA--------------CTTGTCAGA-----CTACgtgtca------atcatttttga-----------------------------------------------------aaccttacT--------------------------------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18194   763336 236 +   823664 aaggaataaccggaagtatttttaaaagatttccCAGAGttttgctctgaattttttgcagtttttt--ttttctattttctttg--attttattgcttttttcattAACCCATTACACCCAATAATAAAATATCTTTAAAGTTTCCCAGCACGCAGAACGCATCGCTTTATACACATACACTTTCACGCATTTGCCTTCcgtttaaaattgttttattcccccaaatttcacaaaaatt
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    163766 169 -  1189296 I
e caeRem4.Crem_Contig0   2317216 123 -  4500979 I

a score=-114.000000
s ce10.chrX              5586209 1 + 17718866 T
s caeJap4.Scaffold18194   763572 1 +   823664 g
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3851099 2 +  4147112 I
e cb4.chrX              10889780 14 + 21540570 I
e caeSp111.Scaffold626    163766 169 -  1189296 I
e caeRem4.Crem_Contig0   2317216 123 -  4500979 I

a score=149728.000000
s ce10.chrX              5586210 177 + 17718866 TTCAGTGAGGAGCCACCGTCTTTACCGAAAAAAATCCGTTCATGCTGCTTGTACAAGTACCCTGATTGGGTGCAAGGAATGGTTGGATCTGAAGGTGGTGGA---GGTCACGGACATTCCCA------TGGAGGAGGAGGAGGAGGGCTTGGATCGTCACAGGTGAGGGCTAAAGGTACGCGTATA
s cb4.chrX              10889794 180 + 21540570 TATAGAGAAGAACCTCCAGCACTTCCAAAGAAAATCCGATCCTGCTGCCTTTACAAATACCCCGATTGGGTACAAGGTATGGTTGGCGGTGAAGGTGGAGGAGGTGGTCATGGACATTCTCACGGTGGTGGCGGAGGA------GGACTTGGATCTTCTCAGGTGAGGGCAAAAGGTACGCATATA
i cb4.chrX              I 14 I 90
s caeRem4.Crem_Contig0   2317339 174 -  4500979 TTCAGTGAGGAACCCCCTGCTCTTCCGAAGAAAATAAGATCGTGTTGTCTTTATAAATATCCTGATTGGGTACAAGGAATGGTTGGAGGAGAAGGCGGTGGCGGTGGTCATGGACACTCTCA------TGGTGGGGGA------GGACTTGGATCTTCTCAGGTGAGGGCGAAAGGTACGCATATA
i caeRem4.Crem_Contig0  I 123 C 0
s caeSp111.Scaffold626    163935 171 -  1189296 TTCAGAGAGGAGCCTCCAGCACTCCCCAAGAAAATTCGATCATGTTGTCTATACAAATACCCTGATTGGGTACAAGGAATGGTTGGAGGTGAAGGTAGTGGA---GGGCATGGACATTCTCA------TGGTGGGGGA------GGGATGGGATCTTCACAGGTGAGGGCTAAAGGTACGCGTATT
i caeSp111.Scaffold626  I 169 C 0
s caePb3.Scfld02_0       3851101 174 +  4147112 TTCAGAGAGGAACCACCTGCACTTCCAAAGAAAATCCGATCCTGTTGTCTCTACAAGTATCCAGACTGGGTTCAAGGAAtggttggtggagaaggtggtgga---ggacatggacattctca------tggtggtgga---ggtgggcttggaTCTTCTCAGGTGAGGGCGAAAGGTACGCGTACA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18194   763573 154 +   823664 ttcAGTGAGGAACCACCTGCTCTTCCCAAAAAGATCCGCTCATGTTGTCTGTACAAATATCCCGACTGGGTGCAAGGAATGGTTGGAGGAGATGGTGGCGGT---GGACACGGTCATTCTCA------CGGAGGAGGA---------------TCTTCACAGGTGAGGGCAAAAGGTA--------
i caeJap4.Scaffold18194 C 0 C 0

a score=-15990.000000
s ce10.chrX              5586387 46 + 17718866 ---AATGTTGCTTT-----GTAATAGTTCGCGTTGTTA------AAGTGGAAATCGTTCA
s caeRem4.Crem_Contig0   2317513 42 -  4500979 ----CTAATAGCTA-----TTCATGGTTTGTTTTCTGACCACATCCGTATA---------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    164106 42 -  1189296 ----GAGGAAGCTG-----ATCAAGACTGTAGTTACCA----ACCGATGAATC---GT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3851275 43 +  4147112 ----TTTATAGCTG-----GTCATGATTCGGattctca------taaaaaattttgtt--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   763727 36 +   823664 TGCTCTGAAGACCATTCCCTTCACAAGTCAACTCAT------------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10889974 90 + 21540570 I

a score=313128.000000
s ce10.chrX              5586433 571 + 17718866  
s cb4.chrX              10890064 554 + 21540570  
i cb4.chrX              I 90 C 0
s caeRem4.Crem_Contig0   2317556 526 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    164148 561 -  1189296  
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3851318 539 +  4147112  
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18194   763763 521 +   823664  
i caeJap4.Scaffold18194 C 0 I 19

a score=-2866.000000
s ce10.chrX              5587004 27 + 17718866 ATCATCTCTTATGACAACTATTAGTTA
s cb4.chrX              10890618 21 + 21540570 TTAATCCCTAAA---AAACGGCTA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318082 24 -  4500979 ATCAAATCCAAACACAAACATTAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    164711 15 -  1189296 -----ATCAAAAGATAAACA-------
i caeSp111.Scaffold626  I 2 C 0
e caePb3.Scfld02_0       3851857 16 +  4147112 I
e caeJap4.Scaffold18194   764284 19 +   823664 I

a score=67.000000
s ce10.chrX              5587031 1 + 17718866 G
s cb4.chrX              10890639 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318106 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3851873 1 +  4147112 A
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18194   764284 19 +   823664 I
e caeSp111.Scaffold626    164726 0 -  1189296 C

a score=87853.000000
s ce10.chrX              5587032 92 + 17718866 ATGAATCTGTGCTGTAAACTGGTAGCCGGGGTTTATACACCCACTATTCGAAACATTCCAATTAGTAAAGATGAGCAATTTTGGTATGTTCC
s cb4.chrX              10890640 92 + 21540570 ATGAATTTGTGCTGTAAATTAGTGGCTGGGGTCTATACACCCACTATTCGAAACATTCCCATTAGCAAAGATGAACAGTGGTGGTGGGTTTC
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2318107 89 -  4500979 ATGAATTTGTGTTGTAAGCTAGTTGCAGGGGTCTATACTCCCACTATTCGAAATATTCCTATTAGTAAAGATGAACAGTTTTGGTAAGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    164726 92 -  1189296 ATGAATTTATGTTGCAAACTGGTCGCCGGGGTCTATACGCCCACTATTCGTCACATTCCAATTAGTAAAGATGAACAATACTGGTGGGTACT
i caeSp111.Scaffold626  C 0 I 19
s caePb3.Scfld02_0       3851874 92 +  4147112 ATGAATTTATGTTGCAAACTGGTAGCTGGGGTCTATACACCCACTATTCGAAACATTCCTATTAGTAAAGATGAACAATATTGgtatgtttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   764303 92 +   823664 ATGAATCTATGCTGCAAATTTGTGTCTGGCGTTTATACTCCTACAATTCGAAACATTCCAATCAGTAAAGATGAAGAATACTGGTAAGATTT
i caeJap4.Scaffold18194 I 19 C 0

a score=-6007.000000
s ce10.chrX              5587124 31 + 17718866 TTTAACGGAAAAAGT-------------ACAGCGGTTTTTTTT---G
s cb4.chrX              10890740 31 + 21540570 TTT--CATAAATGGA-------------ATAGAATTTAGTTTTCGG-
i cb4.chrX              I 8 I 14
s caePb3.Scfld02_0       3851966 24 +  4147112 ------ttcaatagt-------------cctgagaatattttt----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   764395 39 +   823664 ----AATAAAAAAGTGGGAtgtgtaaaaaaaacaactttttta----
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    164818 19 -  1189296 I
e caeRem4.Crem_Contig0   2318196  0 -  4500979 C

a score=-26837.000000
s ce10.chrX              5587155  89 + 17718866 AAATTGAATTAAAATCGAACTAAAGGTTT---------------TTTTAAAACC-------------------------------------AGTTATGAAACAT-------AATTAAAATTGTTTT------GTTTTACC--AAATTATGGCAATA--------
s cb4.chrX              10890785 124 + 21540570 -----aaattcagaaaa----aaaaactttagcgattttaaaaattcaaaaaatctctcaAATATCAACATTCCGCAAATTCTCTCACATACTTTTCCAGAGCT-------GAACATAATTCTTCA----------------AAATACTTACATGA--------
i cb4.chrX              I 14 I 27
s caeSp111.Scaffold626    164837  52 -  1189296 AAGCTGAATAAACATCG----GGAAATTC-----------------------------------------------------------------------AGTT-------atcagaaattttatt----------------------ttacagTA--------
i caeSp111.Scaffold626  I 19 I 4
s caePb3.Scfld02_0       3851990  89 +  4147112 ---ttgcctcaagatcg----aaacatttttg------------ttcagagcat-------------------------------------aTTTTCTTGAGCA-------ACCCAAAACTGTTTCTCG--AAGCTTCCC--AAACTgttaaagca--------
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18194   764434  97 +   823664 -----------agGCAG----GAGTACTt---------------tgtaataatt-------------------------------------tttttagtgaactttgtgaaaaacattattcttttttgttggttctatTGAGAACGCTTGAAAAgtcggaatt
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2318196   0 -  4500979 C

a score=-7393.000000
s ce10.chrX              5587244 22 + 17718866 -TTTTT----------ACACATCAAATTTTTTT--
s cb4.chrX              10890936 12 + 21540570 --TTTG----------GCAAGTC---------T--
i cb4.chrX              I 27 I 2
s caeRem4.Crem_Contig0   2318196  8 -  4500979 ----------------GCATgtc---------t--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    164893  8 -  1189296 ----------------CCAAAAC---------T--
i caeSp111.Scaffold626  I 4 I 4
s caeJap4.Scaffold18194   764531 26 +   823664 tttttgtggaaaaaaaacggttc---------cTC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3852079 16 +  4147112 I

a score=-140646.000000
s ce10.chrX              5587266 253 + 17718866 AGCA---------AACTTTTTTTTAAAGTGTAAATA--------GTTTTTAA-AAAGCGAAT----ATCCCGTAAACT---------TGAGG----------------------------AAAATGTTCATAAAGTTCCAAAATGTATGTAAACTA------AAAAAAC-------TTA--------------------------TTTTTTCTGAAA--------------TCAAAATTAAATTTA-------------------TCGCAAATT-------------AATA----CTATTTCA-----------------------AAAAATTTAATAATTTACC----------------AAAAAACGCATTCAAACACGTACTAGCAAATTCTT-------GGTATCTGCTTTACCCGACCAAAATTTTCCAAAAA---TTACGATT--T
s cb4.chrX              10890950 346 + 21540570 AGCAGaggttcagaatttttcatctaattttctacattttgccTGTTAGGAA-acaggaattttcgaaataggAAA------------AAGGACGATGCTAAAAGAActattctatttttaaaaactcattcaaatttcaaca-aaatgtagaaaa------aaaatgc-------tgaaaccTCGCTCTAGATCTGCCACACGATTTTTCTCAtga--------------taaaaatgttaattt------------------gggaaaaatt-------------gaaa--attaaatttgcaGTTCGTGTTCCATCTGTGTGGGACCGTTTACTAATCTATTTCAAcacaaaatccc-aaaaag-----tcAAGAA--------AAAATCCTC----TACCGGAATATTcttc------------aactaaaaaaacatTACAATT-C-
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2318204 105 -  4500979 -------------aattgttttttaaacattttata--------GTTAGAAT-AACGTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGTGATAGCT--------------------GTAAAAGTT-------------ACAA-----------------------------------GACCATTATTTATACTGTT------------------------------------------------------------AAATCGTCTTC------------ATATAGAAGA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    164905 172 -  1189296 -------------aaaacattttttcgatgtCTACA--------GTTTT-----------------ATTCATGAA------------------------------------------CTCAATGACTGTTT-------------------------------CACATAA-------TTGATGT----------------------TTTTCCACATag--------------tgaaaactaaaaatt----------------------aaaatg-------------aaaa----tgattctc-----------------------aagcaaaatgtaattcga-----------------aaaaaa-----tacagaacTT-----TGAATgctt----------atttgttttc-------------------------atacAGTTA--
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3852095 303 +  4147112 -----------agaaaactacagtagagtgattgaa--------gttttga-----gtattt--cgattcagaaaa------------aagt-----------------------ttccgaataTCTCtttagaattc--------------gaaa------aatatgg-------TAAACCTGAGCTTGAC----------CAATTTTCAATACAA---------GATTTTGGAAgtcgaaagttttcaataatattcatctactagaaaatgtttttttcgtccaaaaatcattgaatttc-----------------------acgaattattcaattcaattttatacGTTAACTCTAAAAAG-----TTCAAAGCTTAC---TGTAGGCCTT-TGTTCAGAAGCTGTTTTCTcct----gaatttctcaaaaa---atggattt---
i caePb3.Scfld02_0      I 16 I 77
s caeJap4.Scaffold18194   764557 272 +   823664 --------------AGCcatcttttaaatttataca--------tttaaaaacattgcaatt-------tttaaaattatttttttccaaat-----------------------tttgtcatggtacgtccaaagtaaaaaaaaaacgcaaaaaaggcgagaaaaaGCGTCCaagttaacttttttttggagttt---------ttttttctacatttcaTCGCCAAACCTGCAAATCTAAGTGA----------------Cgcgcaaaattt-------------ttaa-----------------------------------aaacattttttaatttttt----------------aaaaaaatgttttcagtttttct---tatttgtttgacctacaggttaggctttt------------------------------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-12235.000000
s ce10.chrX              5587519 44 + 17718866 TTGCATATCAGGTCT------TTCATTATGAAAAGGCACCAAAATGAACA
s cb4.chrX              10891296 33 + 21540570 ------TTCAGA---------CAAATCTAGGGGGTTCGTCAC--TGCATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318309  6 -  4500979 --------------------------------------------TGGGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165077 30 -  1189296 ------atctaattt------taaatttgaaaaattttccga--------
i caeSp111.Scaffold626  C 0 I 9
s caeJap4.Scaffold18194   764829 42 +   823664 ttttACCTTGGACCTACCATCAATATTaggaaaaattggcaa--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3852398 77 +  4147112 I

a score=76628.000000
s ce10.chrX              5587563 206 + 17718866 AAACGCA--------TTTCAGAAAACCAGCATAT-----GCAATGATGATTTAAATTTAAGACAAAATGAAAAATTTGGAATCTT------TATTAA-TGT---ATTTTTGAAAAAAAAAATCC-TAAT-------------GTTTTTCAGCATGCGAGAAGCGCAGTTTCACTCCGCAGCACCGCCGATCTCAGCTCCAAATCAGTCCCAAACATCAGTGAGTCAGTTGGACCCAGGTAAGC
s cb4.chrX              10891329 195 + 21540570 ATATGGAAATGacatttgcaaaaattcaaaatgt------tgacATTTGAACT---TTATAATCA---------------AATCC------AATCAA-AA--------CCACTAATACGAATTtgcatata---------tattttttcagcatgcGAGAAGCGCAGTTTCACTCCGCAGCACCACCGATCTCAGCTCCAAGTCAGTCCCAAACATCAGCGAGTCAGCTGGACCCAGGTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318315 190 -  4500979 ATATGTA------ATTTATAAGATTATAGATTTT-----ATAAAACTTGTAGT--GTTGtgacaa---------------aattc------aattta-gaA---GCTTTCAATCATacatgttt-cata--------------ttttccagcATGCGAGAAGCGCAGCTTCACTCCGCAGTGCCGCCGATCTCAGCTCCAAGTCAGTCCCAAACATCAGCGAGTCAGCTGGACCCAGGTGAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165116 201 -  1189296 GAACATTTGTAGTCGTAGTA-TACgacaaaactt-----tgaaaattt-cccTTCTTGACTACAA------------GTCGATTC------AATTTG-TGT---ATTATAAAACATTCTCATCC-CTTC------------ATCTTTTCAGCATGCGAGAAGCGCAGTTTCACTCCGCAGCACCGCCGATCTCAGTTCCAAATCAGTCCCAAACATCAGTAAGTCAGTTGGACCCAGGTAAGA
i caeSp111.Scaffold626  I 9 C 0
s caePb3.Scfld02_0       3852475 213 +  4147112 aaatgtacaAAACAGTAGTACTACGTCGAAACTT-----CACACATCTATCCCTATTTATGACAACATTTATGa-gcgaaaattc------aatttgatat---cTCTTGACCCCTcataattt-ctc--------------tttttccagcaTGCGAGAAGCGCAGTTTCACTCCGCAGCACCGCCGATCTCAGCTCCAAGTCAGTCCCAAACATCAGCGAGTCAGTTGGACCCAGGTAAAA
i caePb3.Scfld02_0      I 77 C 0
s caeJap4.Scaffold18194   764871 218 +   823664 aaactgA------AACTGAAACATGATAAAATTCAAAGAAGGAAAGTTTTGCA--CTTGTGAGAA---------------ATTTCTTTAAGAAATTA-TGCTCGCttttaatgaattttaattt-aatcccACCACTAATTGCATTTTCAGCATGCGAGAAGCGCAGCTTCACTCCGCAGCACAGCCGATCTCAGCTCCAAGTCAGTACCCAACATCAGCGAATCCGCTGGACCCAGGTATGT
i caeJap4.Scaffold18194 C 0 I 67

a score=-2797.000000
s ce10.chrX              5587769 121 + 17718866 CTTC-----ATTTTTTG----ATTTTCCTAT-ACCCAACACGTTTTTTTTTGTTGAGTGGGGGTAGTTAATTTTG-AGCACAAAAATTGTGAAGCATCGCATCTTTTTCA----TTTTTTTATACAACGAG---TTCTC
s cb4.chrX              10891524  99 + 21540570 ATTACGACctcttcaca----tttttttctt-cactgt-------------ATAGTTT-GGTAATATTG-------AGCACTTTGCTTCCGAAGTATCGCA---------TC--tttttttATACAACGAG---TTGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318505 119 -  4500979 ACAA--------TTACT----ATTCTCCTGT-CACTAT----TAGTATGTGGTTGCTT-GGTTTTTTCGTTTCCGTAGCACTCAATTTCTGAAGCATCGcattcctttcttc--tttttttatacgAAGAAGACTTGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165317 109 -  1189296 Acct--------cttttcaaatatttccgAG-CACATTGCAGTGAT------TTGTGT-TGTATAGTTACTTCCGAA--ACTCAGCC---------CTGCattcctttcttctcattttttatacaATGAG---CTCCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3852688 112 +  4147112 ACTA--------TTTCT----TATTACCCATCCACCTTCTCGTAGTCTG--GTTGCGT-TGTATAGTTATTTTGAGAGCACTCTGCT---------TTGCATTcctttcatcaatttttttatacaAAGAG---CTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   765089  67 +   823664 I

a score=171116.000000
s ce10.chrX              5587890 192 + 17718866 ATAAATCAAGCACTCGCACCCATCA--GTTCCTTCAAAGTTGACC-------CGACAGAGCATGTGTTCAGGTTCACGGTCTGGTCAACAATCGCGTCGAAGCAGCAAACCGGTCGGTGCCGGGGCTAATTCATTGCTCAAACAAGCTATTGCCAACAGGATGATGCCGCACGCGACAACATCAGACGGAGGAGAATCTTC
s cb4.chrX              10891623 182 + 21540570 ATAAATCAAGCACTCGCACCCATCactttttcctcaaaattgt-CTTCCCTTCGACAGAGCATGTGTTCAGGT------TCTGGTCAACAATCCCGTCGAAGCAGCAAAGCGGCCGGCGTCGGAGCTAATTCGTTGCTCAAACAGGCGATTGCCAACAGAATGATGCCGCATACAATACCA------------GAGTCGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318624 191 -  4500979 ATAAATCAAGCACTCGCACCCATCA--GTTTCTTCAAAGTTGC-C-------CGACAGAGCATGTGTTCAGGTTCGCGCTCTGGTCAACAATCTCGTCGAAGCAGCAAAGCTCCAGGAACCGGAGCTAATTCATTGCTCAAACAGGCGATTGCCAACAGAATGATGCCACATGTAGCACCATCGGATGGAGGTGAAACGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165426 191 -  1189296 ATAAATAAAGCACTCGCACCgattc--gttttctcaaaGTTGT-C-------CGACAGAGCATGTGTTCAGGTTCGCGCTCCGGTCAACAATCGCGTCGAAGCAGCAAAGCGGCCGGAGCCGGGGCTAATTCACTGCTCAAACAGGCAATTGCGAATAGAATGATGCCACATGGAACATCGATAGACGGAGGAGAATCGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3852800 192 +  4147112 ATAAATCAAGCACTCGCACCCATCA--GTTCTTTCAAAGTTGTCC-------CGACAGAGCATGTGTTCAGGTTCGCGCTCCGGTCAACAATCCCGTCGAAGCAGCAAAGCGCCCGGAGCCGGGGCTAATTCATTGCTCAAACAAGCCATTGCCAACAGGTTAATGCCACATGCAACAACAACCGATGGAGGAGAGTCTTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   765156 184 +   823664 ATCAAGAAGGCACTCGCACCAGTTTATCTTTTTTGAAAGTTGT-C-------CGACAGAGCATGTGTTCAGGTTCGCGGCCCGGCCAACCTTCTCGTCGAACCAGCAAAGTGAGCGGCACCGGAGCTAATTCTCTGCTCAAACAAGCCATTGCAAATAGGTTGATGCCGCATGCCGC---------CGAAGGAGAATCTTC
i caeJap4.Scaffold18194 I 67 I 7

a score=1913.000000
s ce10.chrX              5588082 34 + 17718866 CGCAGCCCCGAATATTGGACAATCTACATCTTCC
s cb4.chrX              10891805 25 + 21540570 CTCAA---CGAACGT------ACCGTCGTCTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318815 28 -  4500979 GACAAATCCAAATCT------CGCCTCGTCTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165617 28 -  1189296 TTCCAATCAGAATGC------TCCATCTTCTTCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3852992 28 +  4147112 ATCAAGTCCAAATAT------GCCATCCTCATCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   765340  7 +   823664 I

a score=1599371.000000
s ce10.chrX              5588116 2596 + 17718866  
s cb4.chrX              10891830 2869 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2318843 2647 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    165645 2539 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3853020 2645 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   765347 2490 +   823664  
i caeJap4.Scaffold18194 I 7 I 844

a score=-6527.000000
s ce10.chrX              5590712 32 + 17718866 AATGTGCTGAAC----ATTAAAAA-T----TATCTGATCTC
s cb4.chrX              10894699 34 + 21540570 AAC-TTTgatat----attgaaaaattttctgtttgatC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2321490 31 -  4500979 TA--Tccgattt----attgaaaaat----aactcgatctc
i caeRem4.Crem_Contig0  C 0 I 174
s caeSp111.Scaffold626    168184 33 -  1189296 at--gaaccaatgaaaattgaaaa------catctgATTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3855665 23 +  4147112 at--tcaaaaat----attggaaa------aatcc------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   767837 844 +   823664 I

a score=273.000000
s ce10.chrX              5590744 1 + 17718866 T
s cb4.chrX              10894733 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    168217 1 -  1189296 T
i caeSp111.Scaffold626  C 0 I 125
e caePb3.Scfld02_0       3855688 0 +  4147112 C
e caeJap4.Scaffold18194   767837 844 +   823664 I
e caeRem4.Crem_Contig0   2321521 174 -  4500979 I

a score=206.000000
s ce10.chrX              5590745 34 + 17718866 TGAATCCCTTGTCTTGTTTTATGAATAAAAGTAA----------
s cb4.chrX              10894734 42 + 21540570 CAATTCTTTTTTGCCATTC--AGAGTGAAAATAAATAAGAACAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3855688 32 +  4147112 TTGATCTCCTCCcacattt--tcaataaaaataa----------
i caePb3.Scfld02_0      C 0 I 172
e caeJap4.Scaffold18194   767837 844 +   823664 I
e caeSp111.Scaffold626    168218 125 -  1189296 I
e caeRem4.Crem_Contig0   2321521 174 -  4500979 I

a score=461.000000
s ce10.chrX              5590779 10 + 17718866 TATATCAAAA
s cb4.chrX              10894776 10 + 21540570 TGTTTCGAAA
i cb4.chrX              C 0 I 40
e caePb3.Scfld02_0       3855720 172 +  4147112 I
e caeJap4.Scaffold18194   767837 844 +   823664 I
e caeSp111.Scaffold626    168218 125 -  1189296 I
e caeRem4.Crem_Contig0   2321521 174 -  4500979 I

a score=0.000000
s ce10.chrX              5590789 707 + 17718866  
e caePb3.Scfld02_0       3855720 172 +  4147112 I
e caeJap4.Scaffold18194   767837 844 +   823664 I
e cb4.chrX              10894786  40 + 21540570 I
e caeSp111.Scaffold626    168218 125 -  1189296 I
e caeRem4.Crem_Contig0   2321521 174 -  4500979 I

a score=5402.000000
s ce10.chrX              5591496 13 + 17718866 ATCGGTTTACGAT
s caeRem4.Crem_Contig0   2321695 13 -  4500979 ATCAGTTTACGAT
i caeRem4.Crem_Contig0  I 174 C 0
s caeSp111.Scaffold626    168343 13 -  1189296 ATTAGATTACGAT
i caeSp111.Scaffold626  I 125 C 0
s caePb3.Scfld02_0       3855892 13 +  4147112 ATCTGTTTACGAT
i caePb3.Scfld02_0      I 172 C 0
e caeJap4.Scaffold18194   767837 844 +   823664 I
e cb4.chrX              10894786 40 + 21540570 I

a score=19413.000000
s ce10.chrX              5591509 246 + 17718866 CTTCTAGAAA---AAGCGGTGGTATTTCTCAACACTG--CGCACAGCTGTTTGGCAGGTGGAG--GCATTTCTACTG----------GCAGAGGACCTC---A--------------TTCTATAA-TGTCATCA--TTTC-AAAGTTAGTCATTGTTTTCAAGCT-ACAA------TTTCTGGATTTTTGT-----CATC-----C-------------------TGATATATGATACTAGCTCATGATC-AAGGC--CAGTCGTAAGAATATAAAAAC-------ACAAACGAAGGTCAGATACTGAACATTTATCTGCCAACATTTGC--------------------
s cb4.chrX              10894826 234 + 21540570 CTTCAAAAAA---CGGTGGTGGTCTTTTTG---------CAC-CAGCTGGACGACAGGTGCTGATGGTCCCCCACCGAGTGAT-------------------GTGC-----------TTCTCAAATTGTCATCT-TTTTCAACGAATTGTCATTGTTATTCAGATGACAA------ACTCTGGATTTTTCT-----CTTC-----TGGGCCCATGTGACG-----CGATTTATGATACTGA---ATGAC--AAAAT-----AGGGATGGATATaaaagaaaaggagagagGTGAAGGATGAATACC-----TAT------------------------------------
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   2321708 294 -  4500979 CTTCTTGAAA---GGACGGTCGAATTTCTATACAAGTACCAC-CAGCTGGGAGACAGGTGGCG--GGACCTCGACAGTGAAATACATGTGACGAAATCCATGGTAT-----------TTCTCGAA-TGTCATCA-TTTTC-ACGAATTGTCATTGTTTTCCAGATGACAA------ATCCT-GATTTTTCTGGATGCTTC-----CA---CCTGTTGATA-----TGAGATATGATACTAG---ATGACT-AAGATTGCCGAAGGACAGGTATAAAATC-------AGAGGTGAAGGACAAAGGCA-----TATATCTGCCAGCCGTCTCCCTCTACCCgattaattttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    168356 290 -  1189296 CTACTTCAAAAGGAGGAGGtcgaatttctgaaaaggg----C-CAACAGCTGGTCAGCAGGTGGCGAATTCCTGGTGAGTAATACATGCGATGGACCTT---CTTTCCTCATTTCTATTCTAGaa-tgtcatcatttttt-tcgaattgtcaTTGTTTTCGAGCTGacaattcttctttctagATGCTTCTATACATACC-----CG-------GTGATAATTCGAGATATATGATATCGG---ATGACT-TGGAT-ATCGAGAGAAGAGTATAAAAAC-------GAAGGTGAAGGTCAGTCACCGGCATGATTACTGCCAGC--------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3855905 276 +  4147112 CTTCAACAA----AGGCGGTCGAATTTCTTAACAGGG--CAC-CAGCTGCTTGACAGGTGGTGGTGGTATCCAACTGAGGATTACATGTGATGGACCTC---ATAT------------------A-TGTCATCA-TTTTC-ACGAATTGTCATTGTTTTCCGGATACGAA------TTTCTGGATCTTTCGTTAGTTTTCTTCAACA-------ATGATGACACTTGATATATGATACTGG---GTGACTAAGGAT-Gt---gagaaaagtataaaaac-------aAAGGTGAAGGTCACTTA-------GGTACCTGCCAGTcgtcttccacttttttc---------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194   767837 844 +   823664 I

a score=-4964.000000
s ce10.chrX              5591755 16 + 17718866 GGGGTTCGTACTTTTC------------------
s cb4.chrX              10895060 23 + 21540570 -------GAATTTCTATTTGAATCCTTA----CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322002 27 -  4500979 -------gaaattttttgaaaatctttagAATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    168646 10 -  1189296 ------CGCCTTCCTC------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3856181  7 +  4147112 I
e caeJap4.Scaffold18194   767837 844 +   823664 I

a score=969.000000
s ce10.chrX              5591771 77 + 17718866 --------------------AACCATGTCTTTTGATTTC-T----------CATATCTAAACTGATGATCCTTTCTTATTCTCACAACTGTCTATAAACATGTGTTAG
s cb4.chrX              10895083 44 + 21540570 --------------------ATAGGAATCTTTTAATTCT-C-------------TTC------------------------------CTGTTTATAAACATGTGTTAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322029 67 -  4500979 --------------------ATCGTTACCTCTCAACATT-CG---------CATTTC-----TGATGAGTCGCTCT------CACAACTGTCTATAAACATGTGTTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    168656 97 -  1189296 TCTCTAAATTCTTATATAAAACTAATCCCCTAAAATTTTGTTCTTCATTTACACTTT-----AGATGAAGTGATTT------CACAACTGTCTATGAACATGTGTTAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3856188 73 +  4147112 ------AATT----------Actatttcc----gatttt-cactACCTCGCCAGTTC-----TGATGAGTCTATCC-----ACACAA----CTATAAACATGTGTTAG
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194   767837 844 +   823664 I

a score=204580.000000
s ce10.chrX              5591848 261 + 17718866 AAAAAGC-TTGTTCC---------------------TGCCTGTTCCGAGTATCAACGAGCAGCAATACTTGGCTATTAATGTGACC---CTACGCACGCAACCCGATTGTATGCGTCTCTTCGAATCGCGCACTCTTCCC--GGAGTCGTTACG--TCTGCGGCCGTA-----GTCTGTGA---------CCCCCC-GCTTGGCT-GTCGGCC-AACCCGC----CGCGCGC-------------GCATTGCCTCTCGCTTTCTTCCA--CTCTTTT--TAGTTGTACA--TTCTGCGCACTTTCTTTT------------TG--CC------------------------CAGTAAATGCCCATATC
s cb4.chrX              10895127 354 + 21540570 AAAAAGCTTTGTCTTCTGTGgacagaaagagagaaaggcCTGTTCCGAGTATCAACGAGCAGAAATTCTTAGCTATTAATGTGACCTCTCTAGGCACGCAACCCA--TCTCTATGTCTCTCCGAATCACTACCTCTTTTC--GTGGTGGTTACG--TCTGCGGCTATATAGTCTTTTGTGACCCGCACTCCCCTCC-GCTTGGCT-GTCGGCC-AACCCGCCTTACGCGCGCACTCGCTCGCGATGCGTTGCCTCTCGCTTTCTT-CACTCTCTTTT--TAGTTGTACATTTTCTGCgcactttccttttttcgaagAAGATG--GCCCCctctttttctcctcctcccAACAATAAATGCCCATATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322096 254 -  4500979 AAAAAGC-TTGTCC----------------------GGCCTGTTCCGAGTATCAACGAGCAGCAATACTTGGCTATTAATGTGACC---CAACGCACGCAACCCA--TCTCTATGTCTCTCCATATCGCGGACTATTTCT--ATAGTTGTTACG--TCTGCGGCTGTA-----GTCTGTGA---------CCCCCC-GCTTGGCT-GTCGGCC-AACCCGC------CGCGC-------------GCGTTGCCTCTCGCTTTCTT-CA--CTCTTTT--TAGTTGTACA--TTCTGCGCACTTTCTTT-------------TG--GC------------------------CAATAAATGCCCATATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    168753 257 -  1189296 AAAAAGC-TTGTTC----------------------AGTCTGTTCCGAGTATCAACGAGCACCAATACTTGGCTATTAATGTGACC---CTACGCACGCAACCCA--TCTCAGCGTCTCTCCGAA---TTCGCAATCTTTCGGCCATTGTTACG--TCTGCGGCAGTA-----GTCTGTGA---------CCCCCC-GCTTGGCT-GTTGGCCAAACCCAC------AACGC-------------GCATCGCCTCTCGCTTTCTT-CG--CTCTTTTTGTAGTTGTACA--TTCTGCgcactttctttt------------tg--tc------------------------caATAAATGCCCATATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3856261 257 +  4147112 GAAAAGC-TTGTCC----------------------GTTCTGTTCTGAGTATCAACGAGCAGCAATACTTGGCTATTAATGTGACC---CTACGCACGCAACCCA--TCGCCGCGTCTCTCCGAACCGCTCTCTATTCTT--GCAGTTGTTACGTCTCTTCAGCAGTA-----GCC--TGA---------CCCCCC-GCTTGGCT-GTTGGCCAAACCCGC------TGCGC-------------GCATtgcctctctttttctt-cg--ctCTTTT--TAGTTGTACA-TTTCTGCGCACTTTCTTTT------------TG--TC------------------------CAATAAATGCCCATATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   768681 257 +   823664 AAAAAGC-TTGTTC----------------------AGTCTGTTTCTAGTATCAGCGAGCAACAATACTTGGCTATTAATGTGACT---CTACGCACGCAACTCG--TCTCTACGTCTCCGCGAATCGCGCTCTCTTTGT--GTATTCGTTACG--TCTGCGGCTGCA-----GTC--TGA---------CCCCTCGGGTTGGCTGGTTGGACAACCCCGC--------TGC-------------GCATTGCCTCTCGTTTTCTT-CA--CTCTTTT--TAGTTGTACA-TTTTTGCGCACTTTCGACG------------CGGTGC------------------------CAGTAAATGGCTAtatc
i caeJap4.Scaffold18194 I 844 I 56

a score=3276.000000
s ce10.chrX              5592109 7 + 17718866 ACTGTGT
s cb4.chrX              10895481 7 + 21540570 AGTATGT
i cb4.chrX              C 0 I 73
s caeRem4.Crem_Contig0   2322350 7 -  4500979 ACTATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169010 7 -  1189296 ACTGTAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3856518 7 +  4147112 ACTATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   768938 56 +   823664 I

a score=638.000000
s ce10.chrX              5592116 3 + 17718866 GAG
s caeRem4.Crem_Contig0   2322357 3 -  4500979 GGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169017 3 -  1189296 GGG
i caeSp111.Scaffold626  C 0 I 41
e caePb3.Scfld02_0       3856525 0 +  4147112 C
e caeJap4.Scaffold18194   768938 56 +   823664 I
e cb4.chrX              10895488 73 + 21540570 I

a score=-549.000000
s ce10.chrX              5592119 45 + 17718866 GAAAGTTGATTTT----CAACAACTATTATCATTTTTAAGGTGTTGTTT
s caeRem4.Crem_Contig0   2322360 35 -  4500979 ---TGTTCGTTTTTAC-CAAcacgtttttttgttctcac----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3856525 39 +  4147112 TAGTGttcctttttcctccaaactttttattgTAACTAC----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   768938 56 +   823664 I
e cb4.chrX              10895488 73 + 21540570 I
e caeSp111.Scaffold626    169020 41 -  1189296 I

a score=-212.000000
s ce10.chrX              5592164  9 + 17718866 ATAACTATT---
s caeJap4.Scaffold18194   768994 12 +   823664 ATAGCTAAAATC
i caeJap4.Scaffold18194 I 56 C 0
e caePb3.Scfld02_0       3856564  0 +  4147112 C
e cb4.chrX              10895488 73 + 21540570 I
e caeSp111.Scaffold626    169020 41 -  1189296 I
e caeRem4.Crem_Contig0   2322395  0 -  4500979 C

a score=-7582.000000
s ce10.chrX              5592173 46 + 17718866 ACTATGTTTAAATA---TAATTCAAAACTTTATAGT------------TTAGCCGTATAGA
s caeRem4.Crem_Contig0   2322395 27 -  4500979 aCTGTATTTCCAT----TGGCTCACAGTATA------------------------------
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    169061 42 -  1189296 ACTGTCTTTAGATACCATGAATCATAACTTTGTAAT------------------GTTAAG-
i caeSp111.Scaffold626  I 41 C 0
s caePb3.Scfld02_0       3856564 35 +  4147112 -ATGTCTCCAAAAATAGTGATTCATCGTATTGTAAT-------------------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18194   769006 56 +   823664 ATAACATTCCGATA---TATCTCATGACGTCACTATCACGGCACTCGCTTCTCTATACA--
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10895488 73 + 21540570 I

a score=-390.000000
s ce10.chrX              5592219 3 + 17718866 AGT--
s cb4.chrX              10895561 3 + 21540570 GGT--
i cb4.chrX              I 73 C 0
s caeRem4.Crem_Contig0   2322424 3 -  4500979 AGT--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    169103 3 -  1189296 AGT--
i caeSp111.Scaffold626  C 0 I 24
s caeJap4.Scaffold18194   769062 3 +   823664 --ttt
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3856599 3 +  4147112 I

a score=-13993.000000
s ce10.chrX              5592222 36 + 17718866 TGT-----------------------------ATTGAATTT---TTGGTTTCATTTTTACAACTAGTT-------
s cb4.chrX              10895564 23 + 21540570 CGG-----------------------------ATTGAACTG---TTTGTTCTGta--------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322427 49 -  4500979 CATTCCTTTCAATCATTCAATAAGTCATGAGAATTTAGCTG------GTGCTGTG--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3856602 37 +  4147112 CAC-----------------------------AGTGACCAGTCATTTTTGTTGTA-tcac-attattt-------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   769065 43 +   823664 -----------------------------ttgtttaagttt---tttgttttgtttttattctttccttttcctt
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    169106 24 -  1189296 I

a score=-11563.000000
s ce10.chrX              5592258 29 + 17718866 ------------TTATTTTTAAATGCAAA--------CACCACAAAAGA
s cb4.chrX              10895587 23 + 21540570 --------------ataattcaaaatatt---------gtTATACA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322476 26 -  4500979 --------------ATATACAAAAACATA---------AAAGTAAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169130 28 -  1189296 ------------ttcttttagatagaata---------gaataaaagaa
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       3856639 32 +  4147112 ------------tttattgtgaaaacATA-----TCGCGCgtaagaaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   769108 49 +   823664 ttactttttcTGTATTGTCTaaaaaaaGAATGCAACGCACTGAAGAAGA
i caeJap4.Scaffold18194 C 0 I 54

a score=13414.000000
s ce10.chrX              5592287 54 + 17718866 AGCATTGTTGCTTTCCTCCGTTGCATCTCAAAACATCTGGTGTAATAC---ATGTAT
s cb4.chrX              10895610 36 + 21540570 ---------------------TACATATTGTAACATTTGACGTATCGtcagaagatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2322502 44 -  4500979 AACATT-------------GTTGCATTTCAAAATATCTGACGCAATGCCCAATGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169158 44 -  1189296 aacatt-------------gttGCATAGTCAAACATCTGACGCAATATCCAATGTCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3856671 44 +  4147112 aacatt-------------gttgCATAGTAAAACATCTGACGCAATATCCAATGTCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   769157 54 +   823664 I

a score=113307.000000
s ce10.chrX              5592341 436 + 17718866  
s cb4.chrX              10895646 524 + 21540570  
i cb4.chrX              C 0 I 159
s caeRem4.Crem_Contig0   2322546 507 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    169202 516 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3856715 515 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   769211 427 +   823664  
i caeJap4.Scaffold18194 I 54 C 0

a score=-16153.000000
s ce10.chrX              5592777 135 + 17718866 -TTCTACTGTT-----------------TCACAGCCCCCTCGTATAAT---ACCTCCAGTGTTTTTACGATTCTTAGAATAT-----------GGAAATTTCT----GTGTTTA-----------TGCAAAAATTTACTTTGCATATAACAAAATGT---------------AGATATGAAATTCTGACTTTTTGTG-----
s caeRem4.Crem_Contig0   2323055 138 -  4500979 -ttctacgACTA-------CAAAGATACCCCCTCTCTCTtgat-ctct---tctttttatgttttcaatggtatttattatt---------ttcgaaattacc----ATATACATG-TCATCGC-TGCCAAAATTAAC-------ACAACAAAGGCA---------------AATTGT----------TTTTGCgtg-----
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    169718 132 -  1189296 -ttctACGACT------------------TCCAACCCACTCA---CTT---TTGTTCTGTGTTTTTACGGTTATGCATTTGAAT-----GATCACAAATTACC----ATATCCATC-TCACCGTTCGTCGAAATTAAC-------ATGACAAACGT-----------------GTCCTA------TGATTTTATGGG-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3857230 135 +  4147112 -ttccacgACT----------------CCTCCAACCCACTCAT-TCCC---TGTTTTTATACTTTTACTGTTATGGGTTTTTGT-----GATCAGAAATTACC----ATATCCATG-TCGTCTCGTGTCGAAATTAAC-------ATTACAAACG------------------GTTGta------taatatttattg-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   769638 189 +   823664 ctcctaCGCATCGGTTTATCGTTTTTCTTTCCTTCCCTTTGAT-CCCCGGACTGTTTTGTACTTTT-----TGTTAGTTTTACTACCGAGTTTACGAATACCCGTCGATTTCCATGATTCTCATGCATAAAAATTTGC-------ACAACAATAACTGAATCATTACCGGCGACACGTAGATTTCTATTCTCACTTATTATT
i caeJap4.Scaffold18194 C 0 I 28
e cb4.chrX              10896170 159 + 21540570 I

a score=-10017.000000
s ce10.chrX              5592912 17 + 17718866 CTCTTT--TCGATTAACCA-----------------------------------------------------
s caeRem4.Crem_Contig0   2323193 42 -  4500979 ttctct-----------ctttctcctaa------TTCCATATT--CCGACT---ATCGATTTTA--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169850 62 -  1189296 TTCTCC----GATTTGCCattttcgtattttctcTCACATCTTCACCG------ACTaatattgattttaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3857365 58 +  4147112 ttttcctcATGATCGCTTACTCTCTT--------TTACATCTTCGCCGTCTTTTATTGGTTTCG------AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   769827 28 +   823664 I
e cb4.chrX              10896170 159 + 21540570 I

a score=-4048.000000
s ce10.chrX              5592929 10 + 17718866 ACATACCT-----------------------AA
s cb4.chrX              10896329 11 + 21540570 aaataccTC----------------------AA
i cb4.chrX              I 159 C 0
s caeRem4.Crem_Contig0   2323235 30 -  4500979 AAATACCTTTTTC---TACGCCGAAACCATAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169912 10 -  1189296 --atact---------------------CCGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3857423 31 +  4147112 --ATACTTCATTCTTATACCTCCACGAACCAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   769827 28 +   823664 I

a score=673930.000000
s ce10.chrX              5592939 881 + 17718866  
s cb4.chrX              10896340 870 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2323265 867 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    169922 870 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3857454 873 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   769855 830 +   823664  
i caeJap4.Scaffold18194 I 28 I 36

a score=-4607.000000
s ce10.chrX              5593820 20 + 17718866 TCTTG----TTTTACAGTATGAGT
s cb4.chrX              10897210 20 + 21540570 TACTAGAA----AAATTTCtgagc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2324132 24 -  4500979 TATTATAATTGTAAACatataaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    170792 22 -  1189296 TATTCGTA-TCTAATCATCGAAA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3858327 23 +  4147112 ttctggaa-atttaaaatcaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   770685 36 +   823664 I

a score=551669.000000
s ce10.chrX              5593840 755 + 17718866  
s cb4.chrX              10897230 705 + 21540570  
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0   2324156 718 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    170814 704 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3858350 741 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   770721 765 +   823664  
i caeJap4.Scaffold18194 I 36 C 0

a score=-1030.000000
s ce10.chrX              5594595 7 + 17718866 AAAAAAA
s caeRem4.Crem_Contig0   2324874 1 -  4500979 ------T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    171518 1 -  1189296 ------T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859091 1 +  4147112 ------a
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   771486 7 +   823664 AAGAAAA
i caeJap4.Scaffold18194 C 0 I 383
e cb4.chrX              10897935 36 + 21540570 I

a score=-6748.000000
s ce10.chrX              5594602 37 + 17718866 AACATCGTGA---AAA------------------------TTGTTATCAATCCGTTTTGTCTTT
s caeRem4.Crem_Contig0   2324875 62 -  4500979 AATTTTCTAAAACACAAGTAATCAAAATAATGTAACCACCCAATTA--AAACCGTTTTGTATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    171519 16 -  1189296 AATATTCTGA---ACAAGT---------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859092 13 +  4147112 aaaatttcaa---aaa------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   771493 383 +   823664 I
e cb4.chrX              10897935 36 + 21540570 I

a score=25403.000000
s ce10.chrX              5594639 231 + 17718866 TAAATGCCTT------------ATATTTCAAAACTATTTTTCGGTCACACAAAAATGTCA--TT------------------------GTACTCATTTCTAGCTCCATAATTGTCC---TTCCCCTTCCCTT-----------TCCCAGCTACTTTTTGATTCAGAAGCCTTCTGAAAACAATCA-----------TAACTTTCGACCAAATTTTTTGT-GTTCCTATCCGCAAAAACTTTGCATCTTTTC-TCGGGTGTCATT------ATTGCATAACT-TGATTTCTGAATTTTTGTACT--------------------
s cb4.chrX              10897971 232 + 21540570 CAACTGCCTT------------ATTTTT--------GGTCACAAAT---CAAAATTGTCA--TTCtgcta----aaacaaaaaatattatatcCATTTCTAGTTC--------CCC---TTTCCTTTCCTGCTATCCTCC---CCACATCTATCTAC---TTCAGAATCTGTCTGAAAACCGTTTATGGAACATCATATAATTCGACCAAACTTTTTGT-GCctac------aaaaactttgaaacgtTCA-CCGGGT-CCTTT------Tctgcataacttt----------tttctttatt--------------------
i cb4.chrX              I 36 I 6
s caeRem4.Crem_Contig0   2324937 249 -  4500979 CAGCTGCCTT------------ATGTTTCCA---CAGTTTTCGGTC---CAacattgtcattttttgttatttttttcaaaa---atcgtacCCATTTCTAGCTCTA----CGTTC---CTTCCTTACCTGCTATCCCACTGTCCACAGCAATTCAA---TTCAGAAGCTCTCTGAAATCATTTC-----------TAAAATtcgaccaaattttttgt-gcctaca-----aaaaactttgaaacttttgtcCGGGTGTCATT------AATACATAACTCCGATATTTGAATGTCTTTatt--------------------
i caeRem4.Crem_Contig0  C 0 I 112
s caeSp111.Scaffold626    171535 253 -  1189296 --AATGCCTTTCCAAATAACTGATGCCttatgttttttattcggTC---ACAACa-gtca--ttttctttcca---------------gtACTCATTTCTAGTTCTA----AGTCCGTTTTCCCCTACCTAC------------TATATTATCCCCCT-ATTCAGAAGCTCTCTGAAAACATATA-----------TAGAATTCGACCAAGTTTTTTGT-Gtcaaca-----aaaa---ctgaaatct----tCGGGTGTCATAATTCAGAATGCATAACTGT------TTATCGCTTTTATTTCGAATGTTCGttgataatt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859105 238 +  4147112 --gatgcctt------------attttttaaatcctATGTTCGGTC---acaaaatgtca--tttttcttttatattc-------ATTGTACTCATTTCTAGTTCTA----AGTCC-CCCTCCCTTCCCTGCCAAGCTTT---TCAAACCCTTCTACT-ATTCAGAAACCCTCTGAAAACATATA-----------TAGAATTcgaccaaattttttgtggcccaca-----aaaaactttgaaactc----tCGGGTGTCATAATTCA-AATGCATAAGT--------------CTGTTATTTT---------------ACC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   771493 383 +   823664 I

a score=-1105.000000
s ce10.chrX              5594870 6 + 17718866 ATTTTT-
s cb4.chrX              10898209 6 + 21540570 -GTTTTT
i cb4.chrX              I 6 I 547
s caeSp111.Scaffold626    171788 6 -  1189296 tgaatt-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859343 6 +  4147112 AGAATT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   771493 383 +   823664 I
e caeRem4.Crem_Contig0   2325186 112 -  4500979 I

a score=345.000000
s ce10.chrX              5594876 23 + 17718866 TTGTTCAGAAAAAAAATATTGAC-
s caeSp111.Scaffold626    171794 19 -  1189296 ttaac----aaagaaatttttaC-
i caeSp111.Scaffold626  C 0 I 59
s caePb3.Scfld02_0       3859349 20 +  4147112 TTATT----AAACAAAGTTTTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   771493 383 +   823664 I
e cb4.chrX              10898215 547 + 21540570 I
e caeRem4.Crem_Contig0   2325186 112 -  4500979 I

a score=251.000000
s ce10.chrX              5594899 4 + 17718866 TGTA
s caePb3.Scfld02_0       3859369 4 +  4147112 Cgta
i caePb3.Scfld02_0      C 0 I 119
e caeJap4.Scaffold18194   771493 383 +   823664 I
e cb4.chrX              10898215 547 + 21540570 I
e caeSp111.Scaffold626    171813 59 -  1189296 I
e caeRem4.Crem_Contig0   2325186 112 -  4500979 I

a score=0.000000
s ce10.chrX              5594903 1000 + 17718866  
e caePb3.Scfld02_0       3859373  119 +  4147112 I
e caeJap4.Scaffold18194   771493  383 +   823664 I
e cb4.chrX              10898215  547 + 21540570 I
e caeSp111.Scaffold626    171813   59 -  1189296 I
e caeRem4.Crem_Contig0   2325186  112 -  4500979 I

a score=587.000000
s ce10.chrX              5595903 12 + 17718866 AGGCACAATCTT
s caeRem4.Crem_Contig0   2325298 12 -  4500979 AGACCCAATCAT
i caeRem4.Crem_Contig0  I 112 I 8
e caePb3.Scfld02_0       3859373 119 +  4147112 I
e caeJap4.Scaffold18194   771493 383 +   823664 I
e cb4.chrX              10898215 547 + 21540570 I
e caeSp111.Scaffold626    171813 59 -  1189296 I

a score=-1425.000000
s ce10.chrX              5595915 25 + 17718866 TTCTGGCGGCATACTTTTCTCGCAA
s caeRem4.Crem_Contig0   2325318 11 -  4500979 tttttttGATA--------------
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    171872 22 -  1189296 TTCTTTGGGTACAAGTTTCTTG---
i caeSp111.Scaffold626  I 59 C 0
s caeJap4.Scaffold18194   771876 25 +   823664 TTCATACAACGCACTTTTTTCCAAG
i caeJap4.Scaffold18194 I 383 C 0
e caePb3.Scfld02_0       3859373 119 +  4147112 I
e cb4.chrX              10898215 547 + 21540570 I

a score=31208.000000
s ce10.chrX              5595940 75 + 17718866 TCAAAAAACATTTTATGATTTTTAATTAATTCGTGAGCAGAATCCAGCGCATCTTGAATGGAGGGATACATTTGA
s caeRem4.Crem_Contig0   2325329 75 -  4500979 TCGAACAACTCTTGTTGTTTGGTGATTAACTCGGGGGCGGCGTGCAAAGCGTCTTGTATTGAGGGATATATCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    171894 72 -  1189296 ---AAGAAGTTTTGCTGTTTATCAACCAATTCGTGGGCGGATTTCAGTGCTTCTTGAATTGAAGGATATATTTGA
i caeSp111.Scaffold626  C 0 I 327
s caePb3.Scfld02_0       3859492 75 +  4147112 TTGaagaattcattttgtttgatGACCAACTCGTGGGCGGCTTTCAACGCATCTTGGATTGACGGATAGATCTGA
i caePb3.Scfld02_0      I 119 C 0
s caeJap4.Scaffold18194   771901 75 +   823664 TCGacgaatttatttttgttagcCGCCAATTCGTGTGCTGCATCGAGAGCATCCTGGATAGAAGGATACATCTGA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10898215 547 + 21540570 I

a score=-384.000000
s ce10.chrX              5596015 2 + 17718866 TT-
s caeRem4.Crem_Contig0   2325404 2 -  4500979 TT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    172293 2 -  1189296 TT-
i caeSp111.Scaffold626  I 327 C 0
s caePb3.Scfld02_0       3859567 2 +  4147112 TT-
i caePb3.Scfld02_0      C 0 I 356
s caeJap4.Scaffold18194   771976 2 +   823664 -TA
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10898215 547 + 21540570 I

a score=-3197.000000
s ce10.chrX              5596017 13 + 17718866 TCTTCCAATATTC--
s caeRem4.Crem_Contig0   2325406 12 -  4500979 -GTATGAAATTTT--
i caeRem4.Crem_Contig0  C 0 I 360
s caeSp111.Scaffold626    172295 13 -  1189296 TTCACAGACATAT--
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   771978 13 +   823664 --TTGTGCTATCTGA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3859569 356 +  4147112 I
e cb4.chrX              10898215 547 + 21540570 I

a score=29.000000
s ce10.chrX              5596030 1 + 17718866 C
s caeSp111.Scaffold626    172308 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   771991 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3859569 356 +  4147112 I
e cb4.chrX              10898215 547 + 21540570 I
e caeRem4.Crem_Contig0   2325418 360 -  4500979 I

a score=207.000000
s ce10.chrX              5596031 1 + 17718866 C
s caeSp111.Scaffold626    172309 1 -  1189296 C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859925 1 +  4147112 C
i caePb3.Scfld02_0      I 356 C 0
s caeJap4.Scaffold18194   771992 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10898215 547 + 21540570 I
e caeRem4.Crem_Contig0   2325418 360 -  4500979 I

a score=-18.000000
s ce10.chrX              5596032 13 + 17718866 TTCTCCAATCAGG
s caeRem4.Crem_Contig0   2325778 13 -  4500979 ttcttcaATTAGA
i caeRem4.Crem_Contig0  I 360 C 0
s caeSp111.Scaffold626    172310 13 -  1189296 CTCCTCAAGCAAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3859926 13 +  4147112 TTCCTCCAGAATT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   771993  7 +   823664 --TGTCAAG----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10898215 547 + 21540570 I

a score=132850.000000
s ce10.chrX              5596045 483 + 17718866  
s cb4.chrX              10898762 478 + 21540570  
i cb4.chrX              I 547 I 3
s caeRem4.Crem_Contig0   2325791 462 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    172323 494 -  1189296  
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3859939 474 +  4147112  
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold18194   772000 489 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-12267.000000
s ce10.chrX              5596528 37 + 17718866 ---------------CGAAAAGCTATGTCAATTTTGCG------TGTTAAATCTACAA
s cb4.chrX              10899243 27 + 21540570 ---------------GTGTGAACTGTGAAAAATGTATG---------CAAA-------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2326261 23 -  4500979 ---------------atACAAGCTTTTTCAAGTAT-------------CAA-------
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    172821 23 -  1189296 ---------------AGGAGAGAAGtttcaaagga-------------aaa-------
i caeSp111.Scaffold626  I 4 C 0
s caeJap4.Scaffold18194   772489 50 +   823664 cttatttatttttatataaTAATAATTTATATCGTTCATTAGGATGATAA--------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3860413 29 +  4147112 I

a score=37225.000000
s ce10.chrX              5596565 164 + 17718866 ACTCACTGCTGAGATTGTATTGCAATTGTAAAAATTGCCGTGAAAATTCCAGCAGCTACCCCTTGCGCAATATCGGAACTTAGAGTCACAACAGCAGTAATGATCCAAATCCACTG--AAATT------ATTTTGGTTTAAAAATTATTTTGGGTTATTTTAAGTGATT-----------------------------------------------AAA
s cb4.chrX              10899270 153 + 21540570 GCTTACTGTTGAGATTGAATGGCAATATTTAGAATAACTAGAGAAATTCCCACAGCCACACCAGGAGCGATATCAGTACAAAGAGTTGCAGTAGCGGTACCAATCCAGATGAACTG--AAATC------ATTTAGCGTTAAAAAATT------gtgacttgaaa----------------------------------------------------aaa
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2326284 149 -  4500979 ACTGACTGTAGAAATGGAATAGCAAGTGTGAGCAACGCGAACGCCATTCCAACAAAAACTCCTGGGGCTATATCAGTACACAGAGTGACAATTGCTGTGACTATCCAAATCCACTT--AAAAC-----------------AAGAAAT------ATGATAGGAAATACATCG---------------------------------------------AAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    172844 143 -  1189296 acaaactgTTGAGATTGAATAGCTATGCTTAGAATAGCAAACGAAATTCCTGCGGCGACACCTTGAGCAATGTCAGTACATAAAGTGACAATCGCAGTAAAAATCCAAATCCactg--aaaattcacaaaCTC-----------------------------AATCTTTGG---------------------------------------------GAA
i caeSp111.Scaffold626  C 0 I 9
s caePb3.Scfld02_0       3860442 208 +  4147112 ACTCACTGTTGCAATTGAATAGCTATTGaagaaacaccaaaaatcaTTCCTGCGAGTACGCCGGGGGGAATATCGATACAAAGAGTAACTGTAGCAGTGAGGATCCACGTCcactgcaaaaattgatatatttttcatataaaagaa------gttatataaaaaatttggcagaaaa-----aaaagaaaagtatataCTTCACatggttccaaaaaa
i caePb3.Scfld02_0      I 29 I 148
s caeJap4.Scaffold18194   772539 187 +   823664 ACGAACTGTTGAGAGCGTATGGCAATTGTGATAATTGCAATAAATATTCCTGCGGCGACACCTTCGGCGATATCCAAACTGAGTGTAATAATCGCGGTGGCTATCCATGTCcactg--aaaaa--atttatttgtgaTT--------------ATCATTTGCAGTACTTTATGAAAAAGTAGGAAACAAAAACGATATCCTC--------------AAA
i caeJap4.Scaffold18194 C 0 C 0

a score=69617.000000
s ce10.chrX              5596729 181 + 17718866 AACCTACGAAGTCATGTTTGGAACACCTCCAAAGTCCTGGTAGTACTGTGCACTTTCTCAACATAGATTCTAGGACAACAATTACAATTGCTGACAGAATACAACTTGGAAGTGATGCTAGATAAGGACCGATTGTTGTAATCACAAGTGCCATGAAGCAAGCACTCGTTATTCCAGATAG
s cb4.chrX              10899424 181 + 21540570 aactcactaaatCGGCTTTGGAACATCTCCACAGCATCGGCAGATCGGtacattttctcaaaagtgGCTCCACGACGACCAAAACTATTGCAGCAAGAACACAACTTGGAAGCGACTCCAATAATGGTCCAATGAACATGATAACAATCAAAATGCAAAGAGCGGCGATAAATCCTGAGAG
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2326434 181 -  4500979 CACTTACAAAGTCATTTATGGAACATCTCCAGAAGTACGGTAATTCCGAGCATTTCTTCAGAAGTGAGCGAACAACAAAAACCACAATGGTGGCTAACACGCACTTGGGGAGGGGCTCTAGAAATACACCGAAGAACTCAATAACTCCCAAAATGATGAGAGCGCTGACTATTCCGGACAG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    172996 181 -  1189296 TACTTACAAAATCATGTTTTGAACACCTCCACAGTCTGGGCAGCTTGGTTATGTTTCTCAGAAGAGGTTCGACGACAACCAGAACAATTGCAGCTAGAACACAATTTGGAAGCGCTTCCAATAATGGTCCAACGAATAGAATCACGAAAAGAATGACAATAGCACTGATGATTCCCGAAAG
i caeSp111.Scaffold626  I 9 C 0
s caePb3.Scfld02_0       3860798 181 +  4147112 AACTCACGAAGTCATGTTTAGAACATTTCCAAAGTCTTGGTAACTCTCCAGCGTTTACTAAAAACGGTATCACAACAAAACACACGAGAACACTCAGCACACAAATCGGCAACGGGGTCAAATAGGTTCCTAGAAAAATGACCACGATTCCAATGACAGCGGAAGAAACAATAGAAGCGAG
i caePb3.Scfld02_0      I 148 C 0
s caeJap4.Scaffold18194   772726 181 +   823664 ATCTTACGAAATCATGTTTGGAGTACTTCCAAAGTTTGGGAAGTTCCTGATATTTCATCAGAAGAGATTTGACAGCAACCAAAACAATAGCGGCCAGGACACAGCTCGGCAGAGATGACAGAAGAGGACCAATAAAGGTGATAACGAAAAAGATGCAGATGCTGCTGATAATTCCTGATAG
i caeJap4.Scaffold18194 C 0 I 574

a score=89467.000000
s ce10.chrX              5596910 200 + 17718866 TTGGGTTTTAGCTCCACTTCTTTCGTTAACAAGGGTTCTCGAAAATGAGGCTGATGTTGGAAACACCGAGAAAAACGAAGATCCAATATTGATAAAGCCGAGGGCTAGAAGTT--------------------------------------------------------------CCTGATTGGAATCGATTCGATATCTGTGCTTTGTGGCAAACTCCTGTCCCATTGCCATTGTGACAGCATATGCGACAACAGCTGGAA
s cb4.chrX              10899605 200 + 21540570 CTGACTTCTCGCACCACACTTTTCGTTCACCAGTGTCCTCGACAAAGAGCAGGAAGTTGGGAATACCGGGAAAAATGCAGATCCGACGTTAACTAGACCAAGTGCCAGAAGCT--------------------------------------------------------------CTTGGTTAGAATCAAGTCtgtatttgtattttttggcGAAAATTTGTCCCATTGCCATAGTCACAGCATATGAAACGACAGCTAAAA
i cb4.chrX              C 0 I 34
s caeRem4.Crem_Contig0   2326615 245 -  4500979 TTGACTTCTAGCACCACTGTCCTTGTTCACCACAGTTCTGGATAAAGAGCAAGAAGTTGGAAACactgggaaaaaagaagagccaAAGTTAGTTATGCCCAGTGCAAGAAGTTCCTAAAATGTTGAATGTCAGATTAACTATTTAGTGAAATGTCGCA-----------------CCTGATTAGTATCCAGCCGATATTTCAATTCACTTGCATACATTCGTCCCATAGCAATAGTCACCGAATAAGCAACAATAGCTGAAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    173177 245 -  1189296 TTGACTTTTGGCGCCACACCTTTCATTCACAAGAGTTCTTGATAATGAGCATGATGTGGGGAAcactgagaaaaatgaagatccAATGTTGATCAAACCCAATGCAAGCAGCTCCTGAA---------------TGGACAATTTCaagagattttcaaaacttttacCA--AATACCTGATTTGAGTCAATTCTGTATTTGTGTTTTCTTGCGAATATCTGTCCCATTGCCATTGTTACAGCATAGGCGACAATTGCTGAAA
i caeSp111.Scaffold626  C 0 I 31
s caePb3.Scfld02_0       3860979 155 +  4147112 TTGAGTTTTAGctccacatttttcattgacaAGCGTTCTTGATAGTGAGCAGCATGTTGGGAAGCACCCGAAAAACGAAGACCCGAAATTGGTCAAGCCAAGCGCAAGGAGTTCCTGAA-------------------------CATAAACTGTTCAA------------------------------------------------------------------------CAGTGTTTCAG----GGTGACAATGG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   773481 245 +   823664 CTGTGTTTTTGCTCCACATTCTTCATTTACCAGAGTCCTCGATAGTGAAGCAGAAGTTGGAAAAGTAGCAAAGAATGAAGATCCAATGTTAATAAGACCCAAGGCAAGAAGTTCCTAAA-----------------AaccgtttttaaaaataacaaactTAGAAAATATGATTACCTGATTAGAATCCAGTCTATACTTGTGCttcttggaaaaaatttgcccCATAGATATTGTCACGGCATAGGCAACAATAGCTGAAA
i caeJap4.Scaffold18194 I 574 C 0

a score=-31.000000
s ce10.chrX              5597110 1 + 17718866 A
s caeJap4.Scaffold18194   773726 1 +   823664 G
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3861134 0 +  4147112 C
e cb4.chrX              10899805 34 + 21540570 I
e caeSp111.Scaffold626    173422 31 -  1189296 I
e caeRem4.Crem_Contig0   2326860 1 -  4500979 I

a score=-5004.000000
s ce10.chrX              5597111 69 + 17718866 AGAGAATGAGGCTGTAACTGATAAATGGCAAGTTTTTAACCAGCTTCGATTTTTC------GCACCATAATACAA
s caePb3.Scfld02_0       3861134  7 +  4147112 -------------GTACCTG-------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   773727 47 +   823664 ----------------------------CAAACACGTTTTGAAGTTCGGTTTTTCACCCGTGTACCAATAGACAA
i caeJap4.Scaffold18194 C 0 I 65
e cb4.chrX              10899805 34 + 21540570 I
e caeSp111.Scaffold626    173422 31 -  1189296 I
e caeRem4.Crem_Contig0   2326860  1 -  4500979 I

a score=-2238.000000
s ce10.chrX              5597180 43 + 17718866 CTTATAGGT-TCGGTTTTACGGTGACTTGCTTGGATTTTTTTTT
s caeRem4.Crem_Contig0   2326861 12 -  4500979 -------GT-TCAATTGtgt------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       3861141 17 +  4147112 ---ATTGGTGTCCATTATGT------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   773774 65 +   823664 I
e cb4.chrX              10899805 34 + 21540570 I
e caeSp111.Scaffold626    173422 31 -  1189296 I

a score=-11396.000000
s ce10.chrX              5597223 78 + 17718866 CTGAATTTTTTAGTCAATTATTATTCAATTAGAAATGAGACCCGCCGCA----TGTCAACTGT--------TGTAAGTTTTTCCGAAATA---
s caeRem4.Crem_Contig0   2326873 53 -  4500979 ----------------ttcgtctttttttcaataa--aaacct-----------aCCAATTGA--------TGCAGCGTCGTACCAAATA---
i caeRem4.Crem_Contig0  C 0 I 69
s caePb3.Scfld02_0       3861158 33 +  4147112 ---------------AGTTATGTTTCCGTGAGAAA--ACATCT------------CCCATTG-------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   773839 92 +   823664 -ctgaattttcaaCCAAGTatggtttatttatttatttgcccTGTTGGAATATCATGAATCGTTTTGACTCTGTAGTTTTTCTCTAAATTTAA
i caeJap4.Scaffold18194 I 65 C 0
e cb4.chrX              10899805 34 + 21540570 I
e caeSp111.Scaffold626    173422 31 -  1189296 I

a score=-10224.000000
s ce10.chrX              5597301 208 + 17718866 GCATCATGTATTTTTGGTACTAACAAGAATTAAAAAAAAATTATCGACAAGCTTTTGTTATTTGA-----AAATATTCTGCT-------AACTAT-CATGG----TATTTGAGCTATACGTGTCTGAAGAAC----TCAAGCAAATTTGTGCACAATAGACAACAAACAGAATATTGGCTGGCACTGTACATATTGGGCTATATTGAACAATTTGATGTAAAATCCCTA
s caePb3.Scfld02_0       3861191 124 +  4147112 -----ATATAGTTATAGCA-----------TAAGAGACGACGGCTGAAAATTAGATGTTATTGGA-----------TTTTTT-------AATT------------------AGTCAGACATACCAACAGAA---------------------ACAGCATTCAA-AAACAGA-----------------------TGAGACATAATATCCAATCT--TGGAAGG------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   773931 199 +   823664 GAAATATGACGCTGTAGTGGCAGCAGTga-tctgaaaaaattgtttaggCGTTTTTAAATtcagatgcaaacgcgctctattgtgaaaaaattgtacGTGGTCGCTACTTTATTGAAACGCGTCTGCATCGCATTGCCGCGTAAAG------AGAATATAAAGTCAGCGAA-----------------------TAAACCATCAACcgcgctctactgcaaaatccCGG
i caeJap4.Scaffold18194 C 0 I 137
e cb4.chrX              10899805  34 + 21540570 I
e caeSp111.Scaffold626    173422  31 -  1189296 I
e caeRem4.Crem_Contig0   2326926  69 -  4500979 I

a score=-608.000000
s ce10.chrX              5597509 28 + 17718866 CTAGTGGCCTTCATCACCTTCAAAGAGA
s caePb3.Scfld02_0       3861315  5 +  4147112 --AGTGG---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   774130 137 +   823664 I
e cb4.chrX              10899805 34 + 21540570 I
e caeSp111.Scaffold626    173422 31 -  1189296 I
e caeRem4.Crem_Contig0   2326926 69 -  4500979 I

a score=91.000000
s ce10.chrX              5597537 1 + 17718866 A
s caeSp111.Scaffold626    173453 1 -  1189296 A
i caeSp111.Scaffold626  I 31 C 0
e caePb3.Scfld02_0       3861320 0 +  4147112 C
e caeJap4.Scaffold18194   774130 137 +   823664 I
e cb4.chrX              10899805 34 + 21540570 I
e caeRem4.Crem_Contig0   2326926 69 -  4500979 I

a score=-204.000000
s ce10.chrX              5597538 16 + 17718866 CCTACCAATT--GAAA--GT
s cb4.chrX              10899839 16 + 21540570 CTTACCGATTCCGATA----
i cb4.chrX              I 34 C 0
s caeSp111.Scaffold626    173454 16 -  1189296 CATACCAATT--GAAAAT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3861320  9 +  4147112 -----tgatt--gaaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   774130 137 +   823664 I
e caeRem4.Crem_Contig0   2326926 69 -  4500979 I

a score=-3737.000000
s ce10.chrX              5597554 14 + 17718866 GCGTCCTGAAAAAT--
s cb4.chrX              10899855 14 + 21540570 GCA--CTGGAATAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2326995 10 -  4500979 -----GTGACCTAAA-
i caeRem4.Crem_Contig0  I 69 C 0
s caeSp111.Scaffold626    173470 14 -  1189296 GCGTCTTGGATAAT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3861329  9 +  4147112 -----tctgaaaat--
i caePb3.Scfld02_0      C 0 I 38
e caeJap4.Scaffold18194   774130 137 +   823664 I

a score=1373.000000
s ce10.chrX              5597568 41 + 17718866 GTACGGCCAGATGTCGATACGGGGAACATCCGGATACGGAA
s cb4.chrX              10899869 41 + 21540570 TTCAGCCCAGATATCGATTCTGGGAAGACTGGGTGACGGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2327005 19 -  4500979 --------AGATACTCACCC-------ACGAGGT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    173484 41 -  1189296 GTATGTCCAAATATCAGTTCTTGGAATGTCAGGTGACGgga
i caeSp111.Scaffold626  C 0 I 44
e caePb3.Scfld02_0       3861338 38 +  4147112 I
e caeJap4.Scaffold18194   774130 137 +   823664 I

a score=-3547.000000
s ce10.chrX              5597609 42 + 17718866 --------------------------------------------ATCCACGGGGAACTGTGTGTAACGTTTTCACACCAAACCTGT
s cb4.chrX              10899910 86 + 21540570 ATCTGAAAGTTCGGACTGTCATAATGTAgcaatttctagaatttacCCTGTAGGAACGTTCTTAAGAATTTTCACCCCATACTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2327024 31 -  4500979 -----ACAGTTCG--------TAACG------------------------------------------TTTGAACTCCATATTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    173569 42 -  1189296 --------------------------------------------aCCCCCGTGGCACTGTATGAAGCGTTTTCACTCCATAATTTT
i caeSp111.Scaffold626  I 44 C 0
s caePb3.Scfld02_0       3861376 42 +  4147112 --------------------------------------------ACCCGCTGGGAAtagttttgattgttttcacaTGATAGTTCG
i caePb3.Scfld02_0      I 38 C 0
e caeJap4.Scaffold18194   774130 137 +   823664 I

a score=111402.000000
s ce10.chrX              5597651 907 + 17718866  
s cb4.chrX              10899996 842 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2327055 867 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    173611 870 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3861418 883 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   774267 862 +   823664  
i caeJap4.Scaffold18194 I 137 I 18

a score=-8109.000000
s ce10.chrX              5598558 21 + 17718866 AAAATGAAAAAGGGGAAAAAG
s cb4.chrX              10900838  9 + 21540570 TCGATCA------------AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2327922 15 -  4500979 TTAATTATA------TTACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174481 10 -  1189296 ttcaagg-----------GTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862301 10 +  4147112 TTGTTGA-----------CTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775129 18 +   823664 I

a score=27525.000000
s ce10.chrX              5598579 80 + 17718866 T-ACCTTGTGGAACATTGTAAACGCCCATCGTAAGTCCTGCGATGAAATC-AGATGCGAAATTGTTGATTTGGTACCTGAAA
s cb4.chrX              10900847 80 + 21540570 T-ACCTTGTGGGACATTGTAAATTCCAACAGTCACTCCGGCAATGATGTC-AGCAGCAAGATAACTCCACTGGTAGCTGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2327937 80 -  4500979 T-ACCTTGCGGAACATTATATATGCCCGTGGTGACTCCCGCGAAGATGTC-GGCGGAGAGTTGGCTTTTGTggtagctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174491 62 -  1189296 TCACCTTGAGGAACATTGTAGATTCCTACAGTGATTCCCGCAATCAAGTC---------GCTG-----------ATCAGCAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862311 75 +  4147112 T-ACCTTGGGCAACAACATAAATGCCCACTGTGGTGCCGGCGACGACGTCTGGCAGTAGGTTGTCT------GTGACGGCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   775147 80 +   823664 t-ACCTTGTGGCACATTGTAAATACCAACAGTCACACCTGCGGTGAGATC-CGATACAAGATTCCCGGAATGATAACtgtaa
i caeJap4.Scaffold18194 I 18 I 44

a score=-9036.000000
s ce10.chrX              5598659 24 + 17718866 -------------TTATAAAATTATAAAGATAGAGTA
s cb4.chrX              10900927 29 + 21540570 TTGAATAgttacaatttaaa---aaaaaagta-----
i cb4.chrX              C 0 I 1329
s caeRem4.Crem_Contig0   2328017 26 -  4500979 ---aaaaaatattatttgaa---tttagGATA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174553  5 -  1189296 -------------TTCCG-------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862386 13 +  4147112 -------------ATCTG------TAAAGATA-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775227 44 +   823664 I

a score=-16625.000000
s ce10.chrX              5598683 137 + 17718866 TCATCAGTGGGGATTCAATCTAAATACATAATTACAGTTTAATATGACTACAAAGCACTTCTCAATTTTTTGAGATTTTCATAATTTTCAGAAAACGTTTTGGTGCATTGCCAACTTTTTCAAATATATGGAATTGT
s caeRem4.Crem_Contig0   2328043  67 -  4500979 TCATCA---------CAA---AAATTC---------------TACCAC-----AAAAGTTCTAAGACTCTAATAA-TTACACTACTTTGCAActaattgt-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174558  35 -  1189296 -------------------------------------------ATGGC------------TTGTacctttaaaaa-----acaaatttagtAAGA------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862399  76 +  4147112 -------------------------------------------ACGGC-----AGTAGATTCGTAATTATTTGGA-----Attattttacgaaaaattat-----CTCTCCctctagtttcaaaaacacaatat---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775227  44 +   823664 I
e cb4.chrX              10900956 1329 + 21540570 I

a score=-7430.000000
s ce10.chrX              5598820 109 + 17718866 TGTGAAGTTTCGAGCGCAAATA-------TCAAAAAAATAGCTTGGGAAAATTGAGTTATTTCTGCTTTTTTCACTTGAAATAAAAATAACTTGAAAGTTTTTTGAGAAGTTATAG
s caeSp111.Scaffold626    174593  17 -  1189296 -----------------------------TCAGCA---------GGAAACGCTTA-------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862475  77 +  4147112 --TTAGGGTTCgatcgaaaatccaaaaattaagcaaaaca-tttgaaaacgcGCATCAATTTCATC---------------------TAGATCGAAAG---------------TAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775227  44 +   823664 I
e cb4.chrX              10900956 1329 + 21540570 I
e caeRem4.Crem_Contig0   2328110   0 -  4500979 C

a score=-15059.000000
s ce10.chrX              5598929 102 + 17718866 TTTTATTATTAGGTTATTTTAAAACTATGGAAACGTTTTTAATCATTTTTAATCACCCCTTACTCCATCTTCA-----TAAATTTCAAAATCCCACACTTACGAGCC
s caeRem4.Crem_Contig0   2328110  32 -  4500979 -----ttttgttatgtTTTGAAAACGC------------TTACCGGGAG----------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174610  30 -  1189296 ----CTTTTCCAGCCATTTGATAC-------------------------------------------------------------------ACCGTACTCT------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862552  86 +  4147112 TGTTCGTTTTCAGTTAATTTATACCAA------------TAATCAGACATAATTAGAAACTA-------TTAAGGAAGTAAAGTATGAAAAAACATACCTCCGCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775227  44 +   823664 I
e cb4.chrX              10900956 1329 + 21540570 I

a score=91.000000
s ce10.chrX              5599031 1 + 17718866 A
s caeJap4.Scaffold18194   775271 1 +   823664 A
i caeJap4.Scaffold18194 I 44 C 0
e caePb3.Scfld02_0       3862638 0 +  4147112 C
e cb4.chrX              10900956 1329 + 21540570 I
e caeSp111.Scaffold626    174640 0 -  1189296 C
e caeRem4.Crem_Contig0   2328142 0 -  4500979 C

a score=-17129.000000
s ce10.chrX              5599032 169 + 17718866 ATCCAATCAATAACTGGAACCCTCCTCAAAATTATTTTCCGAATACCATCTTTTGAGAGAAATGTGCAGTAATTGTTTATTTTTTTCTTAAC-------CCAAGTTTCATTGCC----------------TTCTCGATTGAAGCTGTACATTTGATCATATTCTTCCTG-AAACT---TCCAAATCTTTGAAAATA-----
s cb4.chrX              10902285 162 + 21540570 ATCCATTTAATAAGTGGGACTCGACGTTTGGCTGCTTTCTCAAGTCCATCTCTGCTTACAATTGTTCGGATCCCGTCTGCTTTTCTCTTGAC-------CCAACtgacttttct-----------tctt-cttctga----attgaTACTTTTTATCATACTCGTCCTGAAAATA-----------TTCGATATAT-----
i cb4.chrX              I 1329 I 5
s caeRem4.Crem_Contig0   2328142 173 -  4500979 GACCAATCCAGAATCGGCAGTCTCCTTTTCACTGCCTTTTTGCACCCGTTTCGGGTGAAGACAaggccaaaatttttgaccttGCGCTTCAC-------CCAATT--CTCGCCG-----------TCTTGCCTCCGAT---ATCCATGAAGCTCGTCGTACTgttgctgaaaacaaaaattatagtttttaaatgt-----
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold626    174640 141 -  1189296 --TCTTTTGAGAGCTGGGAC---------------------GAATCCTTTTCTCGTTAAAGCATTTCCATAATTATCTACTTT---CTTGGA--CAA--CCAATTGCCACTGCT----------------CTCCCGATTATATTCATATTTCTTATCATACTCTGCCTG-AAATA--------ACTATTGAAACTA-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862638 161 +  4147112 -ACCATCCGATGATTGGAATTCG------------------GTGTTCGATCATCCTTCCAACACCACT-CAATTGGGCTCCTT---CTTTGATTCGAtcccattttcttctgatCCAATTTGGTGGCTC-CTCCCGGTTGAAACCATTTTGTCTGTCGTAATCCTCCTG-ATTCA----------TCTTGAGAAGA-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   775272 169 +   823664 ATCCAACGAGCGAATGGCACCCTACGCAATACAGATTTCTTGAATCCATTCTTGGTGAATACCGCTCCAAAAGTGTTCGCCTTTTTTCGTAG-------CCAATTGTCTTCTGG-----------AATT-CTTTGGT----AGCCGTATTCGCGATCATAGTCCtcct--aaaca-------tttttttcaactgataaaa
i caeJap4.Scaffold18194 C 0 C 0

a score=-4741.000000
s ce10.chrX              5599201 16 + 17718866 TTCAAACACTTTGCAA
s cb4.chrX              10902452 16 + 21540570 GTCACACCGCTCTTAG
i cb4.chrX              I 5 I 5
s caeSp111.Scaffold626    174781 16 -  1189296 ACCGGAAAATTCCTAA
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       3862799 10 +  4147112 ACAGAAGGAC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   775441 13 +   823664 ttaaaatcattAT---
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2328315 14 -  4500979 I

a score=5993.000000
s ce10.chrX              5599217 14 + 17718866 ACCTGTTTCATTTT
s cb4.chrX              10902473 12 + 21540570 ACCTGATTCA--TG
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2328329 14 -  4500979 acctgattcatttt
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold626    174805 12 -  1189296 ACctgattca--ta
i caeSp111.Scaffold626  I 8 C 0
s caeJap4.Scaffold18194   775454 14 +   823664 ACCTGTTTCATGTT
i caeJap4.Scaffold18194 C 0 I 180
e caePb3.Scfld02_0       3862809  0 +  4147112 C

a score=15106.000000
s ce10.chrX              5599231 132 + 17718866 TAAGCAGCTGTTAATATTTACCCATCGAAAAGC-----GCCTGGCTTTTATACAGAAAAAGTAGATCAACTGAAA---AAGTTCAAAACTCAACCGGAAAGTTTCAAACGCTCTTGGG-AAGTCACTGATAAGCCG---CGGTC
s cb4.chrX              10902485 135 + 21540570 GCAGCTGGAATACTCGTTGCTCTAACTGAAGAT-GAAGATTGCCTTTTTATACCCGATTGA-ggattagctgaaa-aaaagttcattacTCAACCGGAAAGTTACAACTA--CGGAGG-AGAGTTGTGATAAGCGA---TGGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2328343 116 -  4500979 tcaaatgaa------------ccAGCAGCAGAC------CTTCCTTTAAGTACTTCTTTGA-GAA-CGGCTGTAA-AAAAGTTCATTACTCAACCGGAAAGTTACAAACA--AGGGGG-AGGCAGCTGATTAGCG----TGGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174817 132 -  1189296 ttttctgaa-gatcAGTTGATTGAATGGCTCTC-CAATACTTGTCTTAAATACCCAAGATG-AGAACAgctgaaa---aagttcattaCTCAACCGGAAAGTTACAAACA--CAGAGG-AGGAAACTGATAAGAAT---CGGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862809 118 +  4147112 -----------------------AACGACTTTCTCAATACTCGTTTTGAATACCCAGTAAG-CAAGCAGCTGAAATACGAGTTCATTATTTAACCGGAAAGTAACAATCA--CAAAGGCGGGAAACTGATAAGGAGAGACGGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775468 180 +   823664 I

a score=37293.000000
s ce10.chrX              5599363 57 + 17718866 AAAGATAATATTTTG-AACGA-----------GATGGTGGAAAATACTCCCACTGTTTCATCAGAAAAT
s cb4.chrX              10902620 57 + 21540570 AAAGCTAAGCATGTG-GAAAA-----------ACTGGTGGAAAATACACCCACTGTTTCATcagaaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2328459 57 -  4500979 AAAGATACTCTTATT-GAAAA-----------GCTGGTGGAAAATACACCCACTGTTTCATCAGAAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    174949 57 -  1189296 AAAGATaatattttgagaaga-----------gcTTGTGGAAAATACGCCCACTGTTTCATCAG-AAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3862927 57 +  4147112 AACCACGCTATTTCGAAGGGA-----------GCTGGTGAAAAATACACCCtctgtttcatcag-aaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   775648 68 +   823664 AAAGATTATATTCTa-aaaaaaGGCATCAGGCGCTGTTGAAAAACACACTCACTGTTTCATCAGCATAT
i caeJap4.Scaffold18194 I 180 I 2587

a score=1117.000000
s ce10.chrX              5599420 34 + 17718866 GGCTCAAATCGGGTTAAAAATTGATAAA-----------ATACAA
s cb4.chrX              10902677 38 + 21540570 acattaaattgtttc-aaaactgATAACGAACTCCACAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2328516 27 -  4500979 CCCCAAAATCGGGTT-AAAACTGATAAC-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    175006 33 -  1189296 CGGCTCAACCGGGtt-aaaactgataaa-----------aatgaa
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3862984 33 +  4147112 gtGCTCAATCGGGAA-ACAAGTGATaaa-----------gtgaaa
i caePb3.Scfld02_0      C 0 I 2054
e caeJap4.Scaffold18194   775716 2587 +   823664 I

a score=3292.000000
s ce10.chrX              5599454 22 + 17718866 GAGCGGCATA----TGTCCTGTGACC
s cb4.chrX              10902715 21 + 21540570 CAATAAGGTT-----GTCCTGTGATC
i cb4.chrX              C 0 I 1186
s caeRem4.Crem_Contig0   2328543 19 -  4500979 --ACAGGGTC-----GTCCTGTGATC
i caeRem4.Crem_Contig0  C 0 I 435
s caeSp111.Scaffold626    175040 26 -  1189296 gaactgTTTCCTTCTGTCCTGTGATC
i caeSp111.Scaffold626  I 1 I 461
e caePb3.Scfld02_0       3863017 2054 +  4147112 I
e caeJap4.Scaffold18194   775716 2587 +   823664 I

a score=0.000000
s ce10.chrX              5599476 1745 + 17718866  
e caePb3.Scfld02_0       3863017 2054 +  4147112 I
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10902736 1186 + 21540570 I
e caeSp111.Scaffold626    175066  461 -  1189296 I
e caeRem4.Crem_Contig0   2328562  435 -  4500979 I

a score=300.000000
s ce10.chrX              5601221 1 + 17718866 G
s caeRem4.Crem_Contig0   2328997 1 -  4500979 g
i caeRem4.Crem_Contig0  I 435 C 0
s caePb3.Scfld02_0       3865071 1 +  4147112 g
i caePb3.Scfld02_0      I 2054 I 16
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10902736 1186 + 21540570 I
e caeSp111.Scaffold626    175066 461 -  1189296 I

a score=-1708.000000
s ce10.chrX              5601222 65 + 17718866 ----AAAAAGAATACCCAAAAACATTTAAAGA-AGCAAAACAGCAAACGTAGAAAT--------TCGGTCTGCCTCGA---
s caeRem4.Crem_Contig0   2328998 62 -  4500979 gaaaagaatgaa---------------aatga-gtaagaaaaaga--cgaaaaagaccaattctttttttttccc-aaaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    175527 50 -  1189296 ----agaaagaa---------------aaagacaccaaaaaaataacagaagACAA--------GGTTTTTGCCC-GA---
i caeSp111.Scaffold626  I 461 C 0
s caePb3.Scfld02_0       3865088 46 +  4147112 ----agaaagaa---------------aaagacacCAGCAAAACA--TGGACAAAG--------GTTTTTTGCCT------
i caePb3.Scfld02_0      I 16 C 0
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10902736 1186 + 21540570 I

a score=44027.000000
s ce10.chrX              5601287 198 + 17718866 AAGGACGGAAGTTATTAAAACA---TGTATCACGTTTGAGTGGACCGA---ATACACTTTACCCTTCATATTATGTCATAACTAGTCAGTTTC-ATATGAAGAAACGAATTGAT----TG--AAAT-TTTGAAGTTGAAGATAAAGA------TGGAAGATAG---------TTT---TTTGAATGCTATACCTGTC-------TGTTGTCATTTCAAATGTGATA-GATTTTTTGAT
s cb4.chrX              10903922 205 + 21540570 agagaaggaAGTTGTTGAAACGAGTGGTGCCACGTTTAAATGGACCAATGTAT---------GCctaatttcattttattagttgttGTACTA-ATGGGGG------AAGT-ATAGA-CT--AAAC-TTTTGTAGAAAAGATAATCA------TACGATACAG----TGGTTTTTTAGTTAAAATATGTCATCTTTTGTCTAA-AGTTGTCAGGTCACATCTGATA-GACTTTTTGAT
i cb4.chrX              I 1186 C 0
s caeRem4.Crem_Contig0   2329060 211 -  4500979 aaatacGGAAGTTGTTAAAACG---TGTATCACGTTTGAATGGACCGACGAATACAATTTTCGTCTCATGTAATGTCATAACTGGTCATTTTATATATGAA------AATTGATgga-ttcaaagt-ttttactgTGAAAAT-ATCA------TGAGATgtag----ttggttttt--tttcgatgtttCGT-TAGTGTCATT-ATCTGTCATATCACATCTGatt-agttttttgat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    175577 206 -  1189296 AAAGACGGAAGTTGTTAAAACT---TGTATCACGTTTGAATGGACCGACGAATACAATTTTCTCCATATGACATGTCATAACTAGTCACttta-atacaaa------aattgatgGA-CA--CAAC-GTGGACTGTGAAGATAACTG------TGAAAAGatgatttttggtttt----------gcaaaaaatggtATCTTC-GGTTGTCACTTCATATCTGTTA-aatctttcgat
i caeSp111.Scaffold626  C 0 I 222
s caePb3.Scfld02_0       3865134 226 +  4147112 AAAGACGGAAGTTGTTAAAATG---TGTATCATGTCTGAATGGGCCAACAGATACAATTTCCAATATTTGGAATGTCATAACTAGTCACTTTC-ATATAGA------AGTTGATGGATTA--GAACAGTGGACTGTGAAGATGATCGTAGTCATGAAATGTaggtttttacttttttttttcttctcggtATCTCTTATCTTCAAGGTGTCAATTCACATCTaatatggttttttgat
i caePb3.Scfld02_0      C 0 I 851
e caeJap4.Scaffold18194   775716 2587 +   823664 I

a score=450.000000
s ce10.chrX              5601485 5 + 17718866 ATGTG
s cb4.chrX              10904127 5 + 21540570 TTGTG
i cb4.chrX              C 0 I 1278
s caeRem4.Crem_Contig0   2329271 5 -  4500979 ctttg
i caeRem4.Crem_Contig0  C 0 I 317
e caePb3.Scfld02_0       3865360 851 +  4147112 I
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e caeSp111.Scaffold626    175783 222 -  1189296 I

a score=0.000000
s ce10.chrX              5601490 1616 + 17718866  
e caePb3.Scfld02_0       3865360  851 +  4147112 I
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10904132 1278 + 21540570 I
e caeSp111.Scaffold626    175783  222 -  1189296 I
e caeRem4.Crem_Contig0   2329276  317 -  4500979 I

a score=546.000000
s ce10.chrX              5603106 2 + 17718866 TT
s caeSp111.Scaffold626    176005 2 -  1189296 TT
i caeSp111.Scaffold626  I 222 C 0
s caePb3.Scfld02_0       3866211 2 +  4147112 TT
i caePb3.Scfld02_0      I 851 C 0
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10904132 1278 + 21540570 I
e caeRem4.Crem_Contig0   2329276 317 -  4500979 I

a score=11975.000000
s ce10.chrX              5603108 63 + 17718866 AGAATCTTTCGATATCGTTTTCTTCCGAAAAA-ATATCACAGTTCGGATCGGAAACGTTCTGCG---------
s caeRem4.Crem_Contig0   2329593 68 -  4500979 AGGAtcttttgat--tattttccTT--AGTGA-ATATCAGAGCTCATGTCGGCAGTGTTCTGTTGACTGTCTG
i caeRem4.Crem_Contig0  I 317 C 0
s caeSp111.Scaffold626    176007 70 -  1189296 AGAACAAATTGAtggtgtttttttc--aaacatctaCCAGAGGTGATATCTGCAACGTTCTGTTGACTGTCT-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3866213 66 +  4147112 AGAatcatttga---tattttcttt--AAAGA-ATATCAGAGGTCAGGTCGGCAACGTTCTGTTGACTGTCT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10904132 1278 + 21540570 I

a score=14345.000000
s ce10.chrX              5603171 103 + 17718866 TGGAAAGAAGTAATCCAATAATCCTGTCGTCATTATGTCATGTTTTGTTTA--------TTTTCCG----TGTCAATCATTTTTTTTTT--------GGTT------------TCACTCTGCTGCGTCGCAAAAT---------------------
s cb4.chrX              10905410 131 + 21540570 TGAGGAAAGGTAATCCTGTAATCCTTTCGCCATCCTGTCATGCTGtttttttCCTGTTGTGTTCCA----TGTCATTTATTTGTTTCTGATCGGGTCTGTTCCTCTGTCGGCGCCTGTCAGCGCCGTCGTCTAAT---------------------
i cb4.chrX              I 1278 I 99
s caeRem4.Crem_Contig0   2329661  87 -  4500979 CGGGAAGGGGTAATCCTATAATCCAGTCGTCATCGTGTCATGTTTTTCATC--------TGTTCTT----TGCCAATTACttgtttcta--------tatt----------------------------tttaaa---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    176077 120 -  1189296 GCGGAGGGAGTAATCCTATAATCCgtttttcgtcatgttttgtttttctttgtttttttccttccgctctttctcattatttgtttctg--------ttct----------------------------tctgattttcgaaacaaatcaaaagtt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3866279 109 +  4147112 GCGGAGGGAGTAATCCTTTAATCCAGTCATCATTGTGtcatgttttccttt-ttttctgtgttccG----TACTAATTATTTGTTTCTG--------TTAT----------------------------TTTGTTTGTT------CCTTTCCAGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775716 2587 +   823664 I

a score=-12209.000000
s ce10.chrX              5603274 52 + 17718866 --------------------CCAAATTCCAACGGATCCATTGTGTTTCTCTATTAGTACC-----------ATTATTTC---TCAT
s caeRem4.Crem_Contig0   2329748 71 -  4500979 caaatatttatatttgttgttttaac----agttgtcattcaa-----------aaaaccaccTGTTGAGCATTTATTTATCTCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    176197 66 -  1189296 --------cCTGGGAGTTCCTCAAATATTAAATGAACTCACATACT--------GACACCTGTCACTGA-CACTAATTC---TGAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3866388 72 +  4147112 --------TCCGCTTTTTCTCAGAGTCTGAAGATATCATTcatgattctgga-aaaaacttcACACT----ATGAATTCGT-TGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   775716 2587 +   823664 I
e cb4.chrX              10905541 99 + 21540570 I

a score=2813.000000
s ce10.chrX              5603326 21 + 17718866 ACTGA-AAATGAAAATAGAGAG
s caeRem4.Crem_Contig0   2329819 16 -  4500979 GTTGG-AACTGA-----CACAG
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626    176263 16 -  1189296 Actga-aattga-----gagag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3866460 15 +  4147112 actgg-aactga------aaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   778303 21 +   823664 ACTGATAActga-aaagaagag
i caeJap4.Scaffold18194 I 2587 C 0
e cb4.chrX              10905541 99 + 21540570 I

a score=322181.000000
s ce10.chrX              5603347 494 + 17718866  
s cb4.chrX              10905640 556 + 21540570  
i cb4.chrX              I 99 I 6
s caeRem4.Crem_Contig0   2329847 505 -  4500979  
i caeRem4.Crem_Contig0  I 12 I 267
s caeSp111.Scaffold626    176279 478 -  1189296  
i caeSp111.Scaffold626  C 0 I 13
s caePb3.Scfld02_0       3866475 489 +  4147112  
i caePb3.Scfld02_0      C 0 I 139
s caeJap4.Scaffold18194   778324 518 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=0.000000
s ce10.chrX              5603841 3 + 17718866 ATG
e caePb3.Scfld02_0       3866964 139 +  4147112 I
e caeJap4.Scaffold18194   778842 0 +   823664 C
e cb4.chrX              10906196 6 + 21540570 I
e caeSp111.Scaffold626    176757 13 -  1189296 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=-8368.000000
s ce10.chrX              5603844 61 + 17718866 TATCACATTTGAATT-------TTTCTCAAT--AG---TATCGTGTTCGCGTTTCATAAAATGT-----TTTATTAAC--
s cb4.chrX              10906202 60 + 21540570 TCTAAAATTC------------TTTGTCAAG--AGGTTTA----GTGAAATTCCCAGAGAAGTGAGTCATTTATCAAC--
i cb4.chrX              I 6 I 269
s caeSp111.Scaffold626    176770 68 -  1189296 TTCAATACTTGACTCTGACCAGTATGCAAAG--AGTTTTACCatgtaga--------aaaatttaacagtttttatac--
i caeSp111.Scaffold626  I 13 I 5
s caeJap4.Scaffold18194   778842 52 +   823664 ----------------------TATGCCATATCAATTTtatcttctttatttttttcccaatt------ttcatAATCTG
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3866964 139 +  4147112 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=1605.000000
s ce10.chrX              5603905 13 + 17718866 ATAAGAGCTATAA
s caeSp111.Scaffold626    176843 13 -  1189296 ataaaaactgtaA
i caeSp111.Scaffold626  I 5 I 184
s caeJap4.Scaffold18194   778894 13 +   823664 ATAAATGCGATAC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3866964 139 +  4147112 I
e cb4.chrX              10906262 269 + 21540570 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=-649.000000
s ce10.chrX              5603918 32 + 17718866 AAGAGAATATATGGTATTGACGCGCAGTgccg
s caeJap4.Scaffold18194   778907 18 +   823664 GATA-----------ATCGACATTCATTG---
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3866964 139 +  4147112 I
e cb4.chrX              10906262 269 + 21540570 I
e caeSp111.Scaffold626    176856 184 -  1189296 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=-3634.000000
s ce10.chrX              5603950 46 + 17718866 cttatctgcatttgg----------gcgtgaaatcaaaggtttggtgctta-cacca
s caePb3.Scfld02_0       3867103 54 +  4147112 cttatct--ctctGGAACCCATAATGTGTGAA-TCCAAAATTTATTGCCTATCATCA
i caePb3.Scfld02_0      I 139 I 135
s caeJap4.Scaffold18194   778925  7 +   823664 --------------------------------ATCAAAA------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10906262 269 + 21540570 I
e caeSp111.Scaffold626    176856 184 -  1189296 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=-1401.000000
s ce10.chrX              5603996 51 + 17718866 catgatacgtgcatgcgcccgactctttttgggtttagcgctgcactgtaa
s caeJap4.Scaffold18194   778932  7 +   823664 CATACTA--------------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3867157 135 +  4147112 I
e cb4.chrX              10906262 269 + 21540570 I
e caeSp111.Scaffold626    176856 184 -  1189296 I
e caeRem4.Crem_Contig0   2330352 267 -  4500979 I

a score=-4419.000000
s ce10.chrX              5604047 59 + 17718866 agaagcgcggAATGCGGTCCCTGAAACA--------CTGTGAAATTGTTAGTGCTGTGTAGAATTTT
s caeRem4.Crem_Contig0   2330619 56 -  4500979 AGAAGCA---AATGAGTTTCATTAATCATTTATCTTCTGTG----TTCTGATATCTTGTAGAA----
i caeRem4.Crem_Contig0  I 267 C 0
s caeJap4.Scaffold18194   778939 13 +   823664 ---------------ATTCAATCAATTT---------------------------------------
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3867157 135 +  4147112 I
e cb4.chrX              10906262 269 + 21540570 I
e caeSp111.Scaffold626    176856 184 -  1189296 I

a score=-402.000000
s ce10.chrX              5604106 16 + 17718866 CAATTCAATTGATTCG
s caeRem4.Crem_Contig0   2330675 13 -  4500979 ---AACAACTGATTTG
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3867292 14 +  4147112 CAAAACAAATGATG--
i caePb3.Scfld02_0      I 135 C 0
s caeJap4.Scaffold18194   778952 15 +   823664 AAACTCAATTTAATC-
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10906262 269 + 21540570 I
e caeSp111.Scaffold626    176856 184 -  1189296 I

a score=858.000000
s ce10.chrX              5604122 8 + 17718866 CTTTAGAT
s cb4.chrX              10906531 8 + 21540570 TTATAAAT
i cb4.chrX              I 269 C 0
s caeRem4.Crem_Contig0   2330690 8 -  4500979 TGATATTT
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3867306 5 +  4147112 ---GAAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   778967 5 +   823664 ---TAAAT
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    176856 184 -  1189296 I

a score=1557.000000
s ce10.chrX              5604130 10 + 17718866 GATAAT-----GTGT
s cb4.chrX              10906539 10 + 21540570 GATACT-----GTGT
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   2330698 10 -  4500979 GATAGT-----GTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    177040 10 -  1189296 GATAGT-----GTGT
i caeSp111.Scaffold626  I 184 C 0
s caePb3.Scfld02_0       3867311 15 +  4147112 GATATTTGATAGTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   778972  2 +   823664 GA-------------
i caeJap4.Scaffold18194 C 0 C 0

a score=-1699.000000
s ce10.chrX              5604140 14 + 17718866 TAGTTACAATTCGC
s caeRem4.Crem_Contig0   2330708  9 -  4500979 TGATTACGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    177050  9 -  1189296 CGATTACGC-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3867326  7 +  4147112 CGAT--CAC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   778974  8 +   823664 -CATTTCGA-----
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10906549 20 + 21540570 I

a score=479640.000000
s ce10.chrX              5604154 913 + 17718866  
s cb4.chrX              10906569 915 + 21540570  
i cb4.chrX              I 20 I 845
s caeRem4.Crem_Contig0   2330717 966 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold626    177059 912 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3867333 916 +  4147112  
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18194   778982 823 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=229410.000000
s ce10.chrX              5605067 426 + 17718866 AGATTGGAAACCGTACACGAAAGCATCAAGATTCGATCTCAGGACTGTCTGGCACCTTTAGCGGTTGGTTTAACCCAATGAAACCAACGACGCCATCAATCAATCAAAGCGAGATTTTTTCGTCGCGGTGAGAAAATAT--TATC--CTTATGTGTTGGATATC--------------TTCTTAGTTTAACTCTCTCTCTTAGTTCCTTAATC-------ATATAT---------TCTTATCAGTGCGGCTATCAACACCCTGGGTATTCGGAATCCGGGATCGAAGACGCCAGTCGGAAGTTTGAAATTTCTAAACGGATTGCTGCCCGACTTGATAT------TGTCGTCGCCG------CCAGTGATAACCG------CCGCTGAAACGCCGGTAGTTT----ACCCATCACAACAAATCACATCAACTTCAGAATCACCAGTGC---TTTCAACAACAGACAACTCTCCTTATTTGGGTTG
s cb4.chrX              10908329 462 + 21540570 AGATTGGAAGCCGTACACGAAAGCATCAAGATTCCATCTCGGGACTGTCCGGCACTTTCAGCGGATGGTTTAATCTTATGAGTCCAGCGACGCCATCAATCAACCAAAGCGAGATTTTCTCTTCACGGTGAGAAAATAT--TATCCATATATATGTTTGATATcgttttctccattttttcc---gttGTTCCCCATAT----CTCTCCTAATCACACACAAATATCATTTTCC-TTTTGTCAGCGCCGCTATCAACACTGTCGGCCTCGGAAAGCCCAAAGAGAAGACGCCGGtgggaagtttgaaattccttAACGGATTACTTCCCGAAGTGACATCACTCACACCTCCACCGCTTCCACCACCGCCAACTAGGAAGTTTCCAAGAACGGCAGAGTTTC----CATCTatagaaaaga------aaactacCGAATCCGAAGTGC---TCTCAGCTTCAGACAATGCTCCTTATCTAGGTtg
i cb4.chrX              I 845 I 16
s caeRem4.Crem_Contig0   2331692 431 -  4500979 AGATTGGGAATCGGACACGGAAGCATCAAGATTCGATATCGGGTCTGTCCGGAACCTTCAGTGGTTGGTTTAATCTTATGAGTCCTGCGACACCATCAATCAAGCAAAGCGATATTTTTTCGTCTAGGTGAGAAAACAT--TCTC--TATCGATGTTGAATATC--------------TTCT---TTTGATTCTTATTT----ACTTCACATT-------GAATATCTTCATCC---TTATCAGCGCGGCAATCAACACCGTCGGTCTGAAGAATTCCGGAATGAAGACGCCAGTGGGAAGTTTAAAATTCCTCAACGGGTTATTGCCTGAAGTGACACC-----CA-CTCCACCG------CCAGCGGAGACAGAAAACACTGAAACAGCACCCGAGGTCA----ACCCTTCAGAACCAATCAcatcaaattcagaatccccagTGC---TTGCAGAAACCGACAACGCTCCTTATTTAGGTTG
i caeRem4.Crem_Contig0  I 9 I 12
s caeSp111.Scaffold626    177971 431 -  1189296 AGATTGGAAATCGGACACGGAAGCATCAAGATTCGATTTCGGGACTGTCTGGCACCTTCAGCGGTTGGTTTAATCTGATGAGTCCAGCGACACCATCAATCAACCAAAGCGAGATCTTCTCTTCTCGGTGAGAAAATAT--TATC--CTTATATGTT-GATatc--------------ttct---ctcaattctctttc----ttttcaaatc-------aaatatCTCTCCTTATGTTATCAGCGCTGCAATCAACACGCTCGGTCTTAGGAATCCCGGAATGAAGACGCCAGTGGGaagtttgaagtttttgaatggattGCTACCTGAAGTGACGT------CACCGTCGCCT------CCAGTCAT---TGCACCACCACCTGAAACACCAATCATCTTTTCATCGCAAACAA-ATATTGTAACAACTTCAGAATCGCCTGTTC---TCTCCACTAGTGACAACTCTCCTTATTTAGGT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3868250 423 +  4147112 agaTCGGAAATCGGACACGGAAGCATCAAGATTCCATATCGGGACTGTCCGGCACCTTCAGCGGTTGGTTTAATCTAATGAGTCCGACAACGCCATCAATCAACCAAAGCGAGATTTTTTCGTCTCGGTGAGAAAATAT--TATC--CTTATATGTT-GACATC--------------TTCT---CCC---CCTTTCTC----TTTCGTTATC-------AAATATCCTTATCTATTCT-TTAGCGCCGCAATCAACACTCTCGGTCTGAGGAATCCCGGAATGAAGACGCCCGTCggaagtttgaaatatttgaacgGTCTGTTGCCAGAAGTGACAT------CACCATCTCCG------CCAGTGATAAGTG------CAGCTGAAACTCCAGTGGTAT----ATCCCACACAACATATCGCATCAGCTTCAGAGTCTCCAGTGC---TTTCTACATCTGACAACTCTCCATACTTAGGTTG
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold18194   779805 384 +   823664 AGATCAGCACGCGAAGTCGGAAACACCAAGATTCCATCTCCGGACTCTCCGGTACCTTCAGCGGTTGGTTTAATTTCATGAATCCCACGACAGCATCAATCAATCaaagtgaaattttttcgtCTCGGTGAGTAACTATAACATC--cttctccatt---------------------tttt---cacaatttatGGTT----TGT--------------CAATATCTC------TATTATCAGCGCCGCTATCAACACTATCGGCGTCCGAAATACAGGATTAAAAACTCCAGTCGGCAGCTTGAAGTTCCTTAACGGTTTGCCTTC-GGAGAGAAATG-----CACCATTCCCA------CAACAGTTGGCTA------CAACAAGCACGG-------------AGC------------------CATTTCCAGAATCACCAGTTCCTACTTCAACAAATGAGAACTCACCGTACTTAGGT--
i caeJap4.Scaffold18194 C 0 C 0

a score=239.000000
s ce10.chrX              5605493 5 + 17718866 AGTTA
s caeJap4.Scaffold18194   780189 5 +   823664 ACTTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3868673 8 +  4147112 I
e cb4.chrX              10908791 16 + 21540570 I
e caeSp111.Scaffold626    178402 0 -  1189296 C
e caeRem4.Crem_Contig0   2332123 12 -  4500979 I

a score=0.000000
s ce10.chrX              5605498 6 + 17718866 TTTTTA
e caePb3.Scfld02_0       3868673 8 +  4147112 I
e caeJap4.Scaffold18194   780194 0 +   823664 C
e cb4.chrX              10908791 16 + 21540570 I
e caeSp111.Scaffold626    178402 0 -  1189296 C
e caeRem4.Crem_Contig0   2332123 12 -  4500979 I

a score=-55751.000000
s ce10.chrX              5605504 252 + 17718866 ATTTTAACAAAAAAATCGATAACAATCTCTCTTGAGTCTCTTGTTGTGACCATCCTAGTCACAAATTTCATGATAAGACATAATTTTGAAAAAAAGTTCAAAA----------GTTAACATTTTACACTAGAAGCACAATACATTTCGATTAGAACACCTTAAAACACAGAAAAGAGATTATAAAAATAGATCATAATGAAAAAATAAAAATAAAAAGTGCAAAATCTTA--ACtaatattttaaaaataattttttCCAATTC-------------
s cb4.chrX              10908807  63 + 21540570 ----------------------------------------------------------------------------------aattgaaaaac----------------------taaca------a--------------------------------------------------------------------------------aaaatgaatagttCACGCTGATC--------------------ATtcatttcattattt--tttccaa--
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2332135  87 -  4500979 ----------------------------------------------------------------------------------atttgagaaata----tggGGTGGTGG----CATGACATTTCTCG--------------------------------------------------------------------------------AAATTAAGCTTTTGAAAACgata--------------------attttccaaaatactTACATTCCAATC
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    178402  92 -  1189296 -------------------------------------------------------TCGTCAC--attt------ttgttggaaatgagaagaaa-------------------aacggaaatttatA--------------------------------------------------------------------------------TGATCAGAACAATCACGATCATTCAAcaaatat----------gttttttatgattc-------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3868681 183 +  4147112 atttcgaaaaaaaaa---------------------------------------ctagaaac--acTTTGAGAATTAagggaaattaaaaaaag--ctCAGAATAGCAGTTTCAACGATACCTGATACTGG--------------TCGATTATCATGTTCCTAAA---GGCCAGTGGCTTCTAGAA--AGAT---------------TGAACAGAGCA--CACAAAGATAAAACTAAGATCTT--GATCAATTCCTAATGAAAC-------------
i caePb3.Scfld02_0      I 8 I 9
e caeJap4.Scaffold18194   780194   0 +   823664 C

a score=-21316.000000
s ce10.chrX              5605756 139 + 17718866 ACCAAACTCTTAAAAAAAGAGCTTGATCGAAGCTAGAAATGGTTTAGTAAACTCGAAAAAAAAAAGG----ATAATACTCTTCTTCCAAAAATATTTTC--------------------------------AACCattttttacataatttatttttaaaaaaaGTTGTTT-------------------------CGTC
s cb4.chrX              10908870  30 + 21540570 -------------------------------------------------------------agaacATGTTATCAC--------AGATAATAAATATTT-----------------------------------------------------------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2332222  30 -  4500979 -------------------------------------------------------------AAAACA----ACTAC--------CGCCAGTCTATGTAT-------------------------------------------------------------------------------------------------CATC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3868873 149 +  4147112 --------------------------------ACAGAAATTCTT---------------AAAGAATA----ATCATGTAGCTTGCTCtactatatttttcaatgataccTAAATTTAGGTATCAAAAACcaacacaattttcaattaactttttttctgaaacttgtaATCAGTTGTGACCAATAACCATGACCATCATC
i caePb3.Scfld02_0      I 9 C 0
e caeJap4.Scaffold18194   780194   0 +   823664 C
e caeSp111.Scaffold626    178494   0 -  1189296 C

a score=-3791.000000
s ce10.chrX              5605895 35 + 17718866 TTAAAATTCTTGATAAATAATAAAGTTATCATTTT----
s cb4.chrX              10908900 26 + 21540570 ---------ATGATCACTTATTGAATTACAGGTCC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2332252 25 -  4500979 TTA-----AATGATCACT-----AATTACTAATCC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3869022 29 +  4147112 TGAACAGTAATCATCATC-----AATTATCGTTC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   780194 35 +   823664 ----TTATAATTTTCACtaattaatttattaattGTTTC
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    178494  0 -  1189296 C

a score=412671.000000
s ce10.chrX              5605930 890 + 17718866  
s cb4.chrX              10908926 930 + 21540570  
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2332277 874 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    178494 858 -  1189296  
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       3869051 878 +  4147112  
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold18194   780229 928 +   823664  
i caeJap4.Scaffold18194 C 0 C 0

a score=-11701.000000
s ce10.chrX              5606820 43 + 17718866 TTTTTTGTTCTCAATCTAGTTACTCGTTATCATGCAAAATTCT------------
s cb4.chrX              10909870 16 + 21540570 TTTT---------------------------ATAAGAAATAAT------------
i cb4.chrX              I 14 I 6
s caeRem4.Crem_Contig0   2333158 21 -  4500979 TTCTC-----------------ACCG-----ATAAGACACATT------------
i caeRem4.Crem_Contig0  I 7 I 5
s caeSp111.Scaffold626    179359 28 -  1189296 tttatta----------aaTTAACGT-----ACAGAGAACTTT------------
i caeSp111.Scaffold626  I 7 I 1
s caeJap4.Scaffold18194   781157 34 +   823664 ----------------TAATTTTGAT-----CTTTAATATTTTGGctcgtttttc
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3869929 33 +  4147112 I

a score=99301.000000
s ce10.chrX              5606863 144 + 17718866 AGAAATATGACGGCGATCGAG---GTACCCACGTGTACCCTCAAACTCCTGAAGAGAAGGAACGAAAAATTGAAGAATTCATCGAGGAAAGACGACGCACGGCATCTACCAGGAAAGTGGAATCT------------CCGGATTTTTCAAACGACGGTA
s cb4.chrX              10909892 159 + 21540570 AGAAATATGACGGTGACCGCGGCCTAACCCATTTCTACCCCCAAACGCCTGAAGAAAAAGAACGGAAAATTGAAGAGTTTCTCGAAGAAAAGAGACGAACTGCACAACAAAAACGATTGGAATCTCTCGAAAACCCGCCAGATTATTCAGATGATCGTG
i cb4.chrX              I 6 I 1
s caeRem4.Crem_Contig0   2333184 147 -  4500979 AGAAATATGATGGAGATCGTGGCACTACTCATATGTACCCCATAACtcctgaagaaaaagaacggaaaattgaagaattcatAGAAGAACGGAGACGTACTGCAGCATTGAGAAGAGCAGAAACT------------CCAGATTTATCTGATGATCGTA
i caeRem4.Crem_Contig0  I 5 I 36
s caeSp111.Scaffold626    179388 147 -  1189296 AGAAATACGATGGGGATCGTGGAACCACACATGTATACCCTCAAACaccagaagaaaaggaacGGAAAATTGCAGAGTTTATTGaggaacgaaaaaaattggcatCTGCTAGAAAAGCTGAATCA------------CCGGATTTATCAGACGATCGTA
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3869962 144 +  4147112 AGAAATATGATGGAGCTAGTG---TTACACACGTGTACCCTCAAacaactgaagaaaaagagcgaaaaatcgaagaattcATTGAAGAACGTCGACGAACGGCGGcacaaagaaaacaagaatct------------CCAGATTTGGACGACGACCGTG
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold18194   781191 144 +   823664 agaaatacGACGGAGATCGTG---GAACACATGTTTATCCAGAGACTCCCGAAGAGAAGgaacgaaaaattgaagagttCATTGAAGAACGACGAAGAACAGCGCTGAACAGAAAGATTGAATCA------------CCAGATTTTTCTGATGATCGTA
i caeJap4.Scaffold18194 C 0 C 0

a score=-3829.000000
s ce10.chrX              5607007 9 + 17718866 GTGTAACAA--
s cb4.chrX              10910052 7 + 21540570 --GTTTGGC--
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold626    179535 7 -  1189296 --AGCtgga--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3870106 7 +  4147112 --AGTTCTC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   781335 9 +   823664 --AGCTTACAA
i caeJap4.Scaffold18194 C 0 I 14
e caeRem4.Crem_Contig0   2333331 36 -  4500979 I

a score=-1377.000000
s ce10.chrX              5607016 20 + 17718866 AATGCCATGACA---TAATATCT
s cb4.chrX              10910059 23 + 21540570 ATTGCTAGGATTGATTGATATTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    179542 12 -  1189296 aata-----------ttatttta
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3870113 15 +  4147112 AATACTG--------TCACTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   781344 14 +   823664 I
e caeRem4.Crem_Contig0   2333331 36 -  4500979 I

a score=-3871.000000
s ce10.chrX              5607036 9 + 17718866 GAATGTTAA-----
s cb4.chrX              10910082 5 + 21540570 TAATA---------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    179554 9 -  1189296 tgGTGATAG-----
i caeSp111.Scaffold626  C 0 I 9
s caePb3.Scfld02_0       3870128 9 +  4147112 CAACAACAG-----
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold18194   781358 9 +   823664 -----AAAGCTTTT
i caeJap4.Scaffold18194 I 14 C 0
e caeRem4.Crem_Contig0   2333331 36 -  4500979 I

a score=97456.000000
s ce10.chrX              5607045 164 + 17718866 TTTTAGTTTTGGGAAAAGTAGTTTCAAACGAAACCGAAAAGTTTCGACTTATGGAGCGTCGAGCATCATCTGTGTCATTTAATAAAGCAAACGCTGTACAAATTTCACTTTTGAATGAGAACCAAAAAAAAGCGGCCGCTTTGATCACAAATCATAATCGGGAA-
s cb4.chrX              10910087 163 + 21540570 TTTCAGCTTTGGCGGGAGTGGTATctaaagaaagagagaggatGCGGTTGATGGAAAGAAGGGCATCTTCGGTATCATTCAATAAATCTAATACATTGCAAGTGACAAGCCTGAATGATGTTCAGAAGAAAGCCTTGGCGTCTGTTAC-CATTATCAGAAGACA-
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2333367 163 -  4500979 TTTTAGCTCTGGCAATGGTTGTttcaaaagaaagagagaagatcCGAGCAATGGAAAGAAGAGCGTCATCAGTTTCATTTAACAAAGCTAATTCAGTACAAGTTTCTCATCTCAACGATATTCAGAAGAAAGCGTTGGCGTCAGTGAA-GATTATAACTCGAAA-
i caeRem4.Crem_Contig0  I 36 I 1
s caeSp111.Scaffold626    179572 163 -  1189296 TTTCAGCTCTGGCAAGAGTTGTTTCTAAAGAGCGAGATAAGATTCGACTAATGGAGCGAAGAGCATCCTCAGTTTCATTTAACAAAGCTAATTCTGTTCAAGTTGCGCATTTGAATGAGATCCAAAAACGAGCATTGGCTTCTGTTAC-AATCATTAACCGAGA-
i caeSp111.Scaffold626  I 9 I 1
s caePb3.Scfld02_0       3870145 163 +  4147112 TTTCAGCTATTGCAAGAATCGTTTCGAAAGAACAGAACAAGCTCCGCCAGATGGAACGTAGGGCATCATCCGTTTCGTTCAACAAGGCTAATACAGTGCAAGTGGCTCATCTGAatgacattcaaaaaagagcattGGCATCAGTGAC-TATCATAAACAGAGA-
i caePb3.Scfld02_0      I 8 I 159
s caeJap4.Scaffold18194   781367 164 +   823664 TTCCAGCATTGGCTTCCGTGGTTTCCAAAGAACGTGACAAACTTCGGCAGCTGGAGAGAAGAGCGTCTTCTGTATCGTTCAACAAAGCGAATGCCATTCAAATTGCACATCTGAATGAAATACAAAAGAAAGCACTGGCTTCAGTGAC-CATTCATCCtagaaaa
i caeJap4.Scaffold18194 C 0 C 0

a score=1001.000000
s ce10.chrX              5607209 33 + 17718866 AATTCGCAGTCAGAAAGGTGAG---TAATTTGTTAT
s cb4.chrX              10910251 36 + 21540570 CGATCAAATTCTGAAAGGTTgttgttcatttttctc
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2333531 29 -  4500979 CGGTCACATTCTGATAGG-------TCAGTcagttt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    179736 34 -  1189296 AATTCACAGTCCGATAGGTTGGT--TAATTTTGAAT
i caeSp111.Scaffold626  I 1 C 0
s caeJap4.Scaffold18194   781531 34 +   823664 aactcacaatgCGATAATCAAAG--GTATTCGTTAT
i caeJap4.Scaffold18194 C 0 I 40
e caePb3.Scfld02_0       3870308 159 +  4147112 I

a score=-34.000000
s ce10.chrX              5607242 16 + 17718866 ACATAAAGATTTT----TTT
s cb4.chrX              10910287 20 + 21540570 acttAAGATTTGCGTAatct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2333560 16 -  4500979 atagaaaaatttc----tcc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    179770 16 -  1189296 GCCTGAGGTTGGT----TTT
i caeSp111.Scaffold626  C 0 I 48
e caePb3.Scfld02_0       3870308 159 +  4147112 I
e caeJap4.Scaffold18194   781565 40 +   823664 I

a score=-1275.000000
s ce10.chrX              5607258 11 + 17718866 AAAGCAAAAAT------
s cb4.chrX              10910307 14 + 21540570 ta---aaatatcaaaat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2333576 11 -  4500979 ta---aaaaattat---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3870308 159 +  4147112 I
e caeJap4.Scaffold18194   781565 40 +   823664 I
e caeSp111.Scaffold626    179786 48 -  1189296 I

a score=138.000000
s ce10.chrX              5607269 15 + 17718866 ACTC-TGGTTTTGGAA
s cb4.chrX              10910321 16 + 21540570 attcatatttccagaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3870308 159 +  4147112 I
e caeJap4.Scaffold18194   781565 40 +   823664 I
e caeSp111.Scaffold626    179786 48 -  1189296 I
e caeRem4.Crem_Contig0   2333587  0 -  4500979 C

a score=0.000000
s ce10.chrX              5607284 626 + 17718866  
e caePb3.Scfld02_0       3870308 159 +  4147112 I
e caeJap4.Scaffold18194   781565  40 +   823664 I
e cb4.chrX              10910337   0 + 21540570 C
e caeSp111.Scaffold626    179786  48 -  1189296 I
e caeRem4.Crem_Contig0   2333587   0 -  4500979 C

a score=245.000000
s ce10.chrX              5607910 11 + 17718866 GAAGCAATAAT
s caePb3.Scfld02_0       3870467 10 +  4147112 GAAATAATA-T
i caePb3.Scfld02_0      I 159 C 0
e caeJap4.Scaffold18194   781565 40 +   823664 I
e cb4.chrX              10910337  0 + 21540570 C
e caeSp111.Scaffold626    179786 48 -  1189296 I
e caeRem4.Crem_Contig0   2333587  0 -  4500979 C

a score=464.000000
s ce10.chrX              5607921 15 + 17718866 TCTTCAAATTTCTCA
s cb4.chrX              10910337 12 + 21540570 tcttcaaatttt---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3870477 11 +  4147112 TGTTTAAAGTT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   781565 40 +   823664 I
e caeSp111.Scaffold626    179786 48 -  1189296 I
e caeRem4.Crem_Contig0   2333587  0 -  4500979 C

a score=572.000000
s ce10.chrX              5607936 10 + 17718866 AAATATTTTA
s cb4.chrX              10910349  8 + 21540570 --aaactttg
i cb4.chrX              C 0 I 4
s caePb3.Scfld02_0       3870488  5 +  4147112 -----CTCTA
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194   781605 10 +   823664 AAATGTCTTA
i caeJap4.Scaffold18194 I 40 C 0
e caeSp111.Scaffold626    179786 48 -  1189296 I
e caeRem4.Crem_Contig0   2333587  0 -  4500979 C

a score=0.000000
s ce10.chrX              5607946 4 + 17718866 ACAA
e caePb3.Scfld02_0       3870493 14 +  4147112 I
e caeJap4.Scaffold18194   781615 0 +   823664 C
e cb4.chrX              10910357 4 + 21540570 I
e caeSp111.Scaffold626    179786 48 -  1189296 I
e caeRem4.Crem_Contig0   2333587 0 -  4500979 C

a score=100417.000000
s ce10.chrX              5607950 283 + 17718866 TTTT-CAGC------ATGGCATCTTCATCAGAATCCCTCTCATCAGATGCTCGTTCGAAAATTTCCATAAAAAAACGAAGCAACTCCCCTCCGCGAACCGTCGCCCCGTGCAT----TCTA--------CCAAAGCAGCCGAGCCAACGAACACTGACCGTCTGTTTTTTAT--TTTCATTTTACTCAATTCTTCTTTT--------TAATTGAGCATTG---TGTTGATTTGCTTCCAAATGTGCAATTGCATTAGGCA------ATTGCATAGAACCCTT-----CGGAGTGAGAGAGAATTTGTTCCGGTCTCTGAACGTTGT
s cb4.chrX              10910361 254 + 21540570 -TTC-CAGCTCTGgatcttcctcctcctctcaATCGATTTCTTCTGGTGCCCGATCAAAAATCTCTATCAAAAAACGAAGCAACTCCCCACCCCAAATTCAAGCGCCTACGAT----CATT--------CAGCGACCTCCCAGCTTGCGAACACTGACCGTTTGTTTT---------------------TCTATATTCT--------TTAGGAA-----------------------CGAGAACATAATTATATCAGTCT------ATTGAAAAGAAGCTTTTTCTAgaagaaagaaggaaattCGTTCCGGTCTCTGGACCTTCT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2333587 269 -  4500979 tttt-cagt------ttgtcaTCATCCTCGGAATCACTATCATCAGATGCTCGCTCAAAGATTTCTATCAAGAAACGTAGCAACTCCCCTCCAACAATATTGGCTCCAACCAT----TATT--------CACAAAGCACCAAGCCAGCGAACGTTGactgtttgtttttta---------ttcactC--TTTTTATTCTAATTGTACATAGGCGA---------TCCGACTCGCTTCCAAATGTATAATCATATtagtta------attgaaaagaagctCT------------AGAGAGAATTTGTTCCGGTCTCTGAACCTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    179834 246 -  1189296 TCTT-CAGT------TCATCATCCTCATCGGAATCTTTATCATCTGATGCCcgatcaaaaatctcaatcaAGAAACGAAGTAACTCCCCACCACACACAATTGCGCCAAGCTT----CCTT--------CCAAAACCGCTAAGCCAGAGAACACTGACcgtttgtttt---------------------cattttcatt--------tcattta----------ttagATCGTGTTCCAA---TATAATTAGATTACTGA------GTAGAAAAGAAGCTTT------------AGAGA-ATTGTGCTGCGGTGTCTGAGCCCTGT
i caeSp111.Scaffold626  I 48 C 0
s caePb3.Scfld02_0       3870507 255 +  4147112 TTTTACAGT------TTGGCATCATCATCGGAGTCATTATCATCAGATGCCAGATCCAAGATCTCAATCAAGAAGCGAAGCAATTCCCCACCCCTGACAatagccccttgcatagccccttgcatTTTACCAAAGCATCCAAGCCAACGAACGCTGACcgtttgtttt---------------------tattttttct--------ctatcga------------ACACTGCATTCC------ATAATTACATTAGCCG------ATTGAAAAGAGGCTTC------------AAAGAGAATTTGTTCCGGTCTCTGAACCTTGT
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18194   781615 279 +   823664 --TT-CAGT------ATCATGTCGTCCTCCGAATCTCTTTCCTCTGATGCTCGTTCCAAGATCTCAATAAAGAAACGAAGCAACTCACCTCCCCGCACTGTTGCTCCATCAAT----TCTT--------CCGAAACAGCCAAGCCAACGGACGTTAACCGTTTGttattttctatttcttttcttttttctttccttct--------ttctctGACGTAGCACCGTCTATTCCGTTCCAGATTTATAATTGCATTTCTTTACTcgcattgaaaaaaag----------------gaaaagaag--gtTCCGgtctctgaacctcac
i caeJap4.Scaffold18194 C 0 I 46

a score=10951.000000
s ce10.chrX              5608233 30 + 17718866 GGTTTCAGTTACATTAG------AATGCAGTAATGA
s cb4.chrX              10910615 36 + 21540570 GGTTTCATTTTCATTAGCATTAAAACGACATAGTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2333856 30 -  4500979 GGTTTCACTTACATTAG------AATGCGGTAATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    180080 24 -  1189296 GGTTTCACTTATATAGA------------GTAATGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3870762 22 +  4147112 GGTTTCACTTACATTAA--------------AATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   781894 46 +   823664 I

a score=86773.000000
s ce10.chrX              5608263 108 + 17718866 CTC-------------------------------ATTGCAGCTCCAACAACAATCGTCTTCGTCAATTGATTCACTCAATTCAACACAAACAACGCGGACCACGTCATCTGTTCGATTGCCGACACGGATTCTTGTTAA
s cb4.chrX              10910651 127 + 21540570 CtcagaaaaggaagagaacCTT------------ATTGCAGCTCCAAAAACAATCGTCGTCGTCAATTGATTCACTCAATTCAACACAAACAACACGAACCACGTCATCTGTCAGATTGCCGACTCGTATTCTTGTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2333886 126 -  4500979 CTC---------ACAGAACCCC----ATTTCACAATTGCAGCTCCAAAAACAATCGTCGTCGTCAATTGATTCACTTAACTCACAAAAGACAACACCAACAACATCTACTGTCCGACTGCCGACTCGTATCACTGTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    180104 128 -  1189296 CTCAGATGAGA-AAAAGCCCCC----------CTATTGCAGCTTCCAAAACaatcatcttcatcaatGGATTCACTGAATTCACaacaaacaacaaaaaccaTGTCATCAGTCAGATTACCAACCCGGATACTTGTGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3870784 138 +  4147112 CTCACACAATA-AGACCACCCCATCCATTCCTTTATTGCAGCTCCAAAAACAATCGTCTTCGTCAATTGATTCACTTAATTCAACGCAAACAACGCGAACGACGTCATCCGTCAGATTGCCGACCCGTATTCTTGTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   781940 108 +   823664 -------------------------------CTTATTGCAGCTCCAAAAACAATCATCGTCGTCCATTGACTCACTTAATTCACAACAAACAACGCGGACCTCCACATCCGTCAGACTACCCACCAGGATTATTGTCAA
i caeJap4.Scaffold18194 I 46 I 133

a score=3467.000000
s ce10.chrX              5608371 25 + 17718866 TCAATCTTCAACAAGTCCTG-ATTCA
s cb4.chrX              10910778 22 + 21540570 TCAATCGT---CCAGTGAAG-AGTCG
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   2334012 22 -  4500979 CCAGTCCT---CAAGTACTG-AACTT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626    180232 17 -  1189296 TCAATCTT---CAAGTACTA------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3870922 23 +  4147112 TCAATCTT---CAAGTACTGCATTTT
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold18194   782181 25 +   823664 TTAATTTTGTAGAGATAATG-ATTCA
i caeJap4.Scaffold18194 I 133 C 0

a score=-12079.000000
s ce10.chrX              5608396 37 + 17718866 CCTGATTGACTTT--------AGACCCCCCA------TAATTCAATATTTT
s caeRem4.Crem_Contig0   2334045 48 -  4500979 TCTGATAACATTCTTGA--AAAACCCTTCCAATGAACTTatccaaaatgt-
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold626    180249 26 -  1189296 ---------------------AACCCTTTCTCG----TCCTTCTTAATCCG
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3870964 33 +  4147112 ---------ATCCGTT-----AACCCTTTCAGA----TAATCCTAAGTTTG
i caePb3.Scfld02_0      I 19 I 17
s caeJap4.Scaffold18194   782206 28 +   823664 AccaattaaaattaaaattaaaatcccG-----------------------
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10910800 42 + 21540570 I

a score=79519.000000
s ce10.chrX              5608433 232 + 17718866 TTTCAGGTAGTGAAGG---AAGTTCCGGGAAATCACAGCACTATTTCGAGAGCAAAGTGAGTTCTTTCTCTCTTCCATattttcttcattttcttcattttcttc-CTACTTGCCTAATTAAT---CTACCA--------GCTCATC--CCGAGTTTATTCTGTC--AGTTTCCCAGCACTTCCTCCTCAATT-TTT-----GATCATTTCGAAATCCA-------------------TATATACGTGTATATTTAGGTTGGTCCGAAAACGAGCA
s cb4.chrX              10910842 237 + 21540570 tttcaggtagTGAAGA---AAGTTCCGGAAAATCTCCACACTATTTCGAGAGCAACGTGAGTTTTCTGGC----------CCTCGTCATTCTTTGC-----TCTC-ATACTTCCTTAATTCATCCTTCTTGGGGCACACAGCTCAT---CTAAGTTTATCC--TCCGAGTTTCCCAGCACTTCCTCATCACTT-TTTCTTCGaatcatttgaaaaaggaagaaggacAGGCACAAAGCTTTC-------ATATTTAGATTGGTCCCAAA-------
i cb4.chrX              I 42 I 12
s caeRem4.Crem_Contig0   2334093 220 -  4500979 tttcaggtAGCGAAGA---GAGTTCCGGAAAATCACAGCACTATTTTGAGAGCAACGTGAGTTT-----------------CTCGTCATATTT----------TC-CCACTTTCCTAATTCATCCTCTCCGG--------ACTCAT---CCAAGTTTATCC--CC--ACTTTCCCAGcacttcctcatttttcgtttctttgaATCATTTAAAACTGGA--gcggaaaag-aaagagatttc-------ATATTTAGATTGGTCCCAAAACGAGCG
i caeRem4.Crem_Contig0  C 0 I 17
s caeSp111.Scaffold626    180280 205 -  1189296 TTTCAGGTAGCGAGGA---GAGTTCCGGGAAATCTCAGGACTATTTTGAGCACAACGTGAGTTT-----------------CTCATTAAATTT----------CCTTCACTTCCttaattcat-ttccaaat--------cCTCAT---CCGAGTTTATCC--TC--ACTTTCCCAGCACTTCctcatctctc-tttcttcgaatcatttaaaaaagaa-------------------tttc-----ataTATTTAGATTGGTCCCAAAACTAGCA
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3871014 211 +  4147112 tttcagGTAGTGAGGA---AAGTTCCGGGAAATCACAACACTATTTTGAGAGCAACGTGAGTTT-----------------CTCATTATATTT----------TC-CCACTTCCCTAATTCCA-atcttcat--------cctcttccacCAAGTTTATCC--CC--ACTTTCTCAGCACTTCCTCATC-ATA-TTTCTGCGAATCatttaaaaaagaa--------------ggaatttcA-----ATATATTTAGATTGGTCCCAAAACGAGCA
i caePb3.Scfld02_0      I 17 I 31
s caeJap4.Scaffold18194   782234 130 +   823664 ATTCAGGTAGCGAAGAGGGAAGTTCCGGAAAATCTCACCACTACTGGGAGAGCAATGTATGTTT-----------------ATAAGTgtgctt----------tc--------------------------a--------tttttt---ttatgtttcatc--tt--a--------------------------ttt----------------------------------------------------atttttagacTGGTCCTAAGACGAGCG
i caeJap4.Scaffold18194 C 0 C 0

a score=-2685.000000
s ce10.chrX              5608665 25 + 17718866 GCACAAGCCACCCGTCGGATTCTTC------
s cb4.chrX              10911091 14 + 21540570 -----------GCGACAACCCCACC------
i cb4.chrX              I 12 I 18
s caeRem4.Crem_Contig0   2334330 14 -  4500979 -----------TCGACAACTACACC------
i caeRem4.Crem_Contig0  I 17 I 4
s caeSp111.Scaffold626    180485 19 -  1189296 ------ACAGCACGACGACTACGAC------
i caeSp111.Scaffold626  C 0 I 6
s caeJap4.Scaffold18194   782364 16 +   823664 ---------------CAACTACACCGTATTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3871225 31 +  4147112 I

a score=198765.000000
s ce10.chrX              5608690 242 + 17718866 TCACTACATTCTAGGCAGACAGGAT---TCACGACGAATGTCCGAGGTTTTAC--CATAATAATA----CTGGGGGAGAGTAAACAACAATTATTTTGTGGTCATTTAGGGTCAAGGAAGTAATTCCTCAGA------TGCGATGGCCCAGGCACGGAAGGGATATTTTCGGAAAAATAATAAGACGCGGAGGAGCAACCGACATCTGGACGA---CACGTCG---CCGTAGCTCCTT----TTG-AGTGACGT-----TAAAATTCAAACta-
s cb4.chrX              10911123 239 + 21540570 GCACCAGAGTCTAGCCAGACAGGAGGAATCGCGACGAATGTCCGAGG--TTGT---TTGAGCATA----TTGGG-----GTAAACAACAATTATTTTGTGGTCATCCAGGGTCAAGGAAGTAATTCCTCAGA------GGCGATGGGCCAAGTGCGGAAAGgatattttcggaaaaataataAGACGCGGAGGAGTAATCGACATCTGGACGA---GACGTCGTCCGCATCGCCGTAG----TAGTTGT----T---GTGATActtaaaattg-
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   2334348 238 -  4500979 -CACCAGACTCTAGGCAGACAGGAT---TCACGACGAATGTCCGAGGTTTTGC---ATAATAATA----TCGGG-----GTAAACAACAATTATTTTGTGGTTATCCAGGGTCAAGGAAGTAATTCCTCAGA------TGCGATGGCCCAAGCGCGGAAAGGGTATTTTCGTAAAAATAATAAGATACGGCGAAGCAATCGACATTTGGACGA---CTCGTCG---ACGTCGCCCTAG----TTGTTGTGACGT---TTGAagcttgaaattg-
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    180510 235 -  1189296 ACACCAGACTCTAGGCAGACAGGAT---TCAAGACGAATGTCCGAGGTTTTGTATAATAATAATG----TCGGT-----GTAAACAAGCATTATTTTGTGGTCATTCAGGGTCAAGGAAGTAATTCTTCAGA------CGCGATGGTTCAGGCGCGGAAGGGATATTTTCGTAAAAATAATAAGACGCGGAGAAGCAATCGACATTTGGACGA---GACGTCG---ACGTCGCCGTAG----TTGTTGTgacat----------ttgaaattg-
i caeSp111.Scaffold626  I 6 I 112
s caePb3.Scfld02_0       3871256 249 +  4147112 CCACCAGACTCTAGGCAGACAGGAT---TCACGACGAATGTCCGAGGTTTTGC---ATAATAATG----TTGGG-----GTAAACAACAATTATTTTGTGGTCATCCAGGGTCAAGGAAGTAATTCCTCAGA------GGCGATGGCCCAGGCTCGCAAAGggtattttcggaaaaataataagacGCGAAGGAGCAATCGACATTTGGACGAGTCGTCGTCG---ACGTCGCCGTAGCTGCTTGTTGTGACATCCGGAGAAacccgaaattg-
i caePb3.Scfld02_0      I 31 C 0
s caeJap4.Scaffold18194   782380 247 +   823664 TCATCCAACTCTGAGCAGACAGGAT---TCGAGGCGAATGTCCGAGGTTTTgc---ataataataatattctCG-----ATAAACAACGATTG-TTTATGGTCATCCAGGGTCAAGGAAGTAATTCTTCAGACGCGGCGGCGATTGCTCAAGCTCGCAAAGGGTATTTtcgtaaaaataataaaacgcGAAGAAGCGATCGACATCTGGACAA---GACGACC---ACGTCTCCGCCG----CTGCCGTGATGC-----AAAAATAACAAACGC
i caeJap4.Scaffold18194 C 0 C 0

a score=2242.000000
s ce10.chrX              5608932 3 + 17718866 aaa
s cb4.chrX              10911362 3 + 21540570 aag
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2334586 3 -  4500979 aaa
i caeRem4.Crem_Contig0  C 0 I 24
s caePb3.Scfld02_0       3871505 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 I 106
s caeJap4.Scaffold18194   782627 3 +   823664 AAA
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    180745 112 -  1189296 I

a score=-804.000000
s ce10.chrX              5608935 4 + 17718866 -ttaa
s cb4.chrX              10911373 4 + 21540570 -taaG
i cb4.chrX              I 8 C 0
s caeJap4.Scaffold18194   782630 4 +   823664 GCAA-
i caeJap4.Scaffold18194 C 0 I 33
e caePb3.Scfld02_0       3871508 106 +  4147112 I
e caeSp111.Scaffold626    180745 112 -  1189296 I
e caeRem4.Crem_Contig0   2334589 24 -  4500979 I

a score=361.000000
s ce10.chrX              5608939 9 + 17718866 aattttaaa
s cb4.chrX              10911377 9 + 21540570 AATTCTTGA
i cb4.chrX              C 0 I 73
e caePb3.Scfld02_0       3871508 106 +  4147112 I
e caeJap4.Scaffold18194   782634 33 +   823664 I
e caeSp111.Scaffold626    180745 112 -  1189296 I
e caeRem4.Crem_Contig0   2334589 24 -  4500979 I

a score=0.000000
s ce10.chrX              5608948 22 + 17718866 attaGATCCTGTGTCAATATTA
e caePb3.Scfld02_0       3871508 106 +  4147112 I
e caeJap4.Scaffold18194   782634 33 +   823664 I
e cb4.chrX              10911386 73 + 21540570 I
e caeSp111.Scaffold626    180745 112 -  1189296 I
e caeRem4.Crem_Contig0   2334589 24 -  4500979 I

a score=-3356.000000
s ce10.chrX              5608970 43 + 17718866 ATTTAGGACTCGAAC---------CTGTTTAGTGAAAAAAAA--------------------------AATCAAATTT---------
s caeRem4.Crem_Contig0   2334613 56 -  4500979 ATTTACGAATTGAACA--ATGATGTAACTCCGAGAAACACAAT--------------------TTAATAAGTGAATTT---------
i caeRem4.Crem_Contig0  I 24 C 0
s caeJap4.Scaffold18194   782667 87 +   823664 ATTTTGGATTGAATCACGATGACGAAACGaggaaataaaaaatcataaaCTAAAAATTAAGCACTAACAACCACACCTCAAGTATTC
i caeJap4.Scaffold18194 I 33 C 0
e caePb3.Scfld02_0       3871508 106 +  4147112 I
e cb4.chrX              10911386 73 + 21540570 I
e caeSp111.Scaffold626    180745 112 -  1189296 I

a score=-3176.000000
s ce10.chrX              5609013 20 + 17718866 TGAGCCTTCCC----ATT--TTTTAA-----------
s cb4.chrX              10911459 22 + 21540570 tgattttttct----ttttcttttga-----------
i cb4.chrX              I 73 I 1
s caeRem4.Crem_Contig0   2334669 22 -  4500979 CGTATTGTTAG----ACTACTTTTCA-----------
i caeRem4.Crem_Contig0  C 0 I 1
s caeJap4.Scaffold18194   782754 37 +   823664 TAGACTTTTGCTCAAATCCCATTTAAATTTTATGTTA
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3871508 106 +  4147112 I
e caeSp111.Scaffold626    180745 112 -  1189296 I

a score=29.000000
s ce10.chrX              5609033 1 + 17718866 T
s caePb3.Scfld02_0       3871614 1 +  4147112 C
i caePb3.Scfld02_0      I 106 C 0
s caeJap4.Scaffold18194   782791 1 +   823664 T
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10911481 1 + 21540570 I
e caeSp111.Scaffold626    180745 112 -  1189296 I
e caeRem4.Crem_Contig0   2334691 1 -  4500979 I

a score=-46807.000000
s ce10.chrX              5609034 196 + 17718866 ACGGGTAAATATTTTT---CTATTTGACACTATAATTGATC-----GGT-----TACAAATAAATAACTt---------------tattatt-attttta----ttataaataaaatattgttg---tgattaattattattatt---TCATACAAGTTT---AACAGT----------------------AAAGCTTTT--------TTGTATTTTGATTA----TGTTTTAAAAAGAGAAGAA----CATGGCATGAATCAA-----------------------AATGGATAAAGG--------------------
s cb4.chrX              10911482 200 + 21540570 acGGGTACCTGTTTTTC-TCTTATTGACACTGTAATTGATCTGCTTGAT-----TTTGAACCGATAAccg-------------------attcaattttt----ttctaaatata------------------------aTAAAC---ACAAAAATGTTC-------CTCCAAAACGaacagatattcaaaaaaaatttt----------attgattgattA----TGTTTCAAGCAAAGAGAGG----GTTTTCAACagggaaaatt------------------ttaaagtttaggA--------------------
i cb4.chrX              I 1 I 44
s caeRem4.Crem_Contig0   2334692 220 -  4500979 ACGggt-cctgttttt----tttttgacataacAATTGATCTTACTCTTTGcgattcgaataaaaaattg-------ggaaactttattatttcattttccaaataataaatatt------------------------attaat---CCATACATGTTC---AACAATACAAGAATATCATTTCCTGCATGAAAGTTTTTCGTCTCATGCTTGATTgatta----tgtttcaa------aatgg----agTTTCAGCTGGGCA-----------------------TATAAATTAAAA--------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    180857 195 -  1189296 ACgggt-tttgttttt---ttgtttgacaCTGCAAACGATCTGGTTGGA-----ATCGATTATATATTTT-------------GAGGCACTTTattattg-----aataaatattacATTG---------------ATTATTATT---TCATACAAGTTCA-AAGAAATAC-------------GTTGCA-GAAG-------------TAATTGAATGATTA----tgtttcgagaa---atttgttctgttttttagTATAT------------------------CATAAATAAAGG--------------------
i caeSp111.Scaffold626  I 112 I 14
s caePb3.Scfld02_0       3871615 188 +  4147112 ACGGGT-TGTGTTATT---TTGTCTGACATTACAATTGATCTGAATGAA-----A-----------------------------ATACCgtttatttttg----ttataaatATTAATTTA---------------ATCATTATTTTATCGTACAAGTC----AAAAATACAAA------TGGTGTTGTGCAAAA-------------TGGTTGAATGATTATGTTTGTTTCAAGAA---GAAGG----GTTTTTAGCAATGA------------------------CATaaaaaaaGT--------------------
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18194   782792 267 +   823664 TCGGGT-CTTGTTTTTTATCTTGTTGACACAGT-TTTGATCTTACCATG-----TtcgtttttggtttttcctgtTCATGCACTCATCCATATATCGTTT----TCATTTACAGTGATGCAACAAAtgaattatgtttttttaat-----gaaaaagttcattaaaaatttgcaattga------------aaaa-------------tagaaaaatgagca----taaaatgaGAT---AGGCG----GTTTGTTAAAACGGTTAGCAAACATTTGTTTCGCTGATTATGATTCAAGCTGAATAGTAATGCTGGGAGG
i caeJap4.Scaffold18194 C 0 C 0

a score=-8706.000000
s ce10.chrX              5609230 22 + 17718866 AGGGCGCGACCC------GTTTCGAATT---------
s caeRem4.Crem_Contig0   2334912 12 -  4500979 -----ACGACC-----------CGAATa---------
i caeRem4.Crem_Contig0  C 0 I 24
s caeSp111.Scaffold626    181066  4 -  1189296 ------------------------AATA---------
i caeSp111.Scaffold626  I 14 I 7
s caePb3.Scfld02_0       3871815  4 +  4147112 ------------------------AAAT---------
i caePb3.Scfld02_0      I 12 I 7
s caeJap4.Scaffold18194   783059 37 +   823664 AAGAATTAACCCGAAAGTGACAAGAACTAGATGAACG
i caeJap4.Scaffold18194 C 0 C 0
e cb4.chrX              10911682 44 + 21540570 I

a score=748200.000000
s ce10.chrX              5609252 1095 + 17718866  
s cb4.chrX              10911726 1082 + 21540570  
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   2334948 1077 -  4500979  
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold626    181077 1081 -  1189296  
i caeSp111.Scaffold626  I 7 C 0
s caePb3.Scfld02_0       3871826 1093 +  4147112  
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18194   783096 1236 +   823664  
i caeJap4.Scaffold18194 C 0 I 138

a score=262884.000000
s ce10.chrX              5610347 530 + 17718866  
s cb4.chrX              10912808 583 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2336025 573 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    182158 567 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3872919 571 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   784470 715 +   823664  
i caeJap4.Scaffold18194 I 138 I 50

a score=-14997.000000
s ce10.chrX              5610877 41 + 17718866 CTAACTA---CA---------------------------------------------TTCAA----AAATTAATAAGCGGAAAATGCAATGCA
s cb4.chrX              10913391 84 + 21540570 CTAAATAAACAACTGTACTTCCTGCTTCGAGTGTACgt-ttttgtgctctttttc--ttctatt--caTATAATAAGCTTGGA----GATGCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2336598 80 -  4500979 TTAGATG---GACTGTACTTCCTGCTACGCCTATGAATGTTCTATAGACTTAGTCAgttctattgaaaaataataagc----------AAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    182725 57 -  1189296 TGATGTG---AAT-----------CAATGACTACGCGA------------GAGCCAgtttgattc-aaaataatgaga---------GATTTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3873490 56 +  4147112 CTTTTTG---AGTT-------CTCCTTAGATTA------------------GGCcagtttgattcaaaaataatgagt---------gatgct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   785185 50 +   823664 I

a score=124124.000000
s ce10.chrX              5610918 503 + 17718866  
s cb4.chrX              10913475 488 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2336678 501 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    182782 502 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3873546 495 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   785235 509 +   823664  
i caeJap4.Scaffold18194 I 50 I 17

a score=-1212.000000
s ce10.chrX              5611421 16 + 17718866 ATCAAGAATAGAGCA----------T
s cb4.chrX              10913963  9 + 21540570 a--------aagaCA---------CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2337179 24 -  4500979 aataaatcTAGGACACACATA--GCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    183284 24 -  1189296 A--AAATCTAGGACACACACATCGCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3874041 22 +  4147112 a--aaatctAGGACACACATA--GCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   785744 17 +   823664 I

a score=8044.000000
s ce10.chrX              5611437  68 + 17718866 GAAAACATAAAAT----------TTTCGTTTCATCGTTTT---------------------------------CACACCCCA--CCCACGTCTCAAA------CCATT------------TTTAA--------------GACAC-C
s cb4.chrX              10913972 122 + 21540570 GAAACCATAAAGTGATAT-TTGCTTTCGTTT----------------------TTAGGGGGAGTGGGA-GGCTCCCGTTTCATTCCCACGTCTGGAATGTCATTCATTGGaaggttctttttttctattttctgaatGCGACGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2337203 116 -  4500979 GAAACCATAAAGTATTTT-CTGTTCtcgtttgtttttcttct----------ctgtGTCACAACTCGA-----CGCGTTTCAGTCCCACGTCTGGAATGCCTTTCATT-GAAGGTTCTTCTCTCA------------GTGATGG-T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    183308 127 -  1189296 GAAACCATAAAGTATTTT-CTGctctcatttgtttttcttccttcttcttcttcttgtgtCACTGCAA-----CGCGTTTCATTCCCACGTCTGGGATGCCTTTCAAT-GATGGTTCTTCTCTAC-----------TGTGACGG-T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3874063 120 +  4147112 GAAACCATAAAGTATTTT--TGCTCTCGTTTGTTTTCCTTTC-----------CCTGTGTCACTGCGGCCCCCCGCGTTTCATTCCCACGTCTGGAATGCCTTTCATT-GAAGGTTCCTCTCCAC-----------TCGGACGG-T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   785761  81 +   823664 gaaaccataaagtttttttttgttttcttttctccattccct--------------------agccgg-----tcggttttgttttca-----------attttcttt-caagattcc----------------------------
i caeJap4.Scaffold18194 I 17 I 104

a score=16543.000000
s ce10.chrX              5611505 122 + 17718866 TACAAATAATTGTCA----CAGCAAA--------AAAAC---AATA-AAAAATGATAAAAACCACGTGTTCAATAGAACAATG-----------------------------CAACTGAGAACGGGTGACACAGGTAATTGATCATG---TTTCTCATTAAAGG-AAATT--G
s cb4.chrX              10914094 138 + 21540570 TTTCACTTATTGCCA----CCGCCCGGTTTTCTGAGAACTAGaaggagaaaataaaaaatacctCGTGTGCAATTGGGTAGGG----------------------ACGAACGGAACTGAAACCCTGTGA-------CACTGATGATTCTACTTTTCGATAACGGAAAACC--G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2337319 135 -  4500979 TGTCTCTAATTGCCA----CCGCCGG---TTCTTagaat---aaagaaaagagagaaaaaaacccgaatgcaatgaaaaatag----------------------gaagagaaaaCGTTGACCGTGTGACAAAGAGCATTGATGATT---TGTTTCGATAACGG-AAATC--G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    183435 147 -  1189296 TGTGTCTAATTGCCATCGCCCGCCGG---TTCTTAGAAT---AAAG-------------AAACCCACGAGcaatagagagaaagagggcgTGTTGAAAACGCGGCCCGAACGGAACTGGG--CGGGTGACACAGAGCATTGATGGGT---CTTTCTGATAA-GG-TAACCGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3874183 133 +  4147112 TGTGTCTAATTGCCA----CCGCCGG---TTCTtagaat---aaag-------agaaaaaaacccgc-----atgagaagaaa----------taaagaagagGTTTGAACGGAACTGGG--TGGGTGACACAGAGCATTGATGATT---TTGTTCGATAACGG-AAATC--G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   785842 104 +   823664 I

a score=-16147.000000
s ce10.chrX              5611627 112 + 17718866 GTAGGAAATTG------CACCAGAGACTGT--------------ACAA-----------CAAAAAGTTGTCAAAGAAACTAAAGAAA-------AGTAATCATGAGAATAGTAGA--GACGGATAATGTG---------------TGAAAAACGAACGACTGACTCA------
s cb4.chrX              10914232 161 + 21540570 ACCGGAAATTAGccgcgggggggggggggttggggcccagaataaaaaatattgttgCCTATGGAGTGAACaaagaaacgaaagaaa-----tttagacgtgtaaaaa-agtaggaagattgaaaaaagaagattcgtaaggggagggaaaaaaTGAACGTGTCTCA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2337454 134 -  4500979 ACAGGAAATTA------AGAAGGTGGAGGtcg------------aaaaataggattttcagAGGAGGGTTCcgagaaacaaaagaaa------aaagtcttCTAGAAATAGTAGG--TGTTTAGAATAGA-------CATGTGGATGCCAAACGAGCATCTGAGTCa------
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    183582 111 -  1189296 ACAGGAAATTG------GATAGGTGgcaat--------------gaaaatatta-tgTTGAAAGAGTTGGtaaagaaacgaaagaaagaaCAATGAGACTTGTGAACACAGGAAA--TTCAGACGGTAG--------------------------ACGTA-------------
i caeSp111.Scaffold626  C 0 I 70
s caePb3.Scfld02_0       3874316 130 +  4147112 ACAGGAAATTG------GATAGGTGGCAAT--------------GAAAATATTATTGTTGAAAGAGTCGACAAAGAAAcgtaagaaaaataattga--------aaaacataaaa--tacaTGTGATAGG-------TAGGTATGGGCATAAAGAACGTCTGAGTTG------
i caePb3.Scfld02_0      C 0 I 14
s caeJap4.Scaffold18194   785946 104 +   823664 GAAGAAAA--G------AGCGATCAGCTGt--------------gcaaaattgattttcta---------CAAAAGTATGATAAAAA---------------TAAAGCTGGTAAG--------CAAAATG---------------TGCTTGAAAAGAACGTGAGTCAGGCGAA
i caeJap4.Scaffold18194 I 104 C 0

a score=6224.000000
s ce10.chrX              5611739 85 + 17718866 GAAAACGTCAGAAGCTTAGCTTATCCAGAGATTACACATTTTCCTCCCTTAAGAAAC--GGACCC--------------ACTATTCTTTGGAGACTTTATG
s cb4.chrX              10914393 68 + 21540570 GACCACGTCAGA-----AGCTTATCCAGAGATTACATGTG---------CCGAAGACGGGGACCT--------------CTCAACCATT-----TTTTGTG
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2337596 67 -  4500979 GAACACGTCAGA-----AGCTTATCCAGAGATTACATTTTCTC------CTGAAGAC--GGACCTA-------------CTCA---ttt-----ttttGTG
i caeRem4.Crem_Contig0  I 8 I 11
s caePb3.Scfld02_0       3874460 53 +  4147112 GAACGCGTCAG------AGCTTATCC--AGATTACATTGG---------ACCAGAAC--TAACCT--------------CATA---------------GGG
i caePb3.Scfld02_0      I 14 I 3
s caeJap4.Scaffold18194   786050 77 +   823664 GAAAGCATCAGA-----AGCTTATCCTTAGATTACATATG-------------------GGGCCTGGGCGGCGCTCGACCATATTCCTTCGTCCCTTCATg
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    183693 70 -  1189296 I

a score=-2968.000000
s ce10.chrX              5611824 240 + 17718866 CAAGGCTTCTCGTTA-AAAAATCTGACG-AAACCAATGAGTTATGAACTCTAA---GAATTTTTAATTGAAATGATATTCGACTCTGTTTTTCCGTTTTTTTTTCAGTGAATTCTAAATTTTGAACA--CTTCCAAAAAGC--AAGCAGACATGAAAATTCT-----TTCCCTCTCACTAAACAGATG--------TAAA----AAAAGTTTGATT----TCAAAGTTATA--TGGTGAATGAGGG---------------------AAAAAG--------GAAAAAAAT--------AAATAAA---AACG
s cb4.chrX              10914464 214 + 21540570 ---GGCTTTTTGCTTAAAAAATCTGACG-AAGACTACGAGTTATGAACTCTTGCGtgaatagtttatcagtttgaTATCTGACTCCGT-----CGTGTTTAGCTGAAT---TTTTCATAACC---CTCCATTC------------------------ACTTC-----------CACAAAAAACAGATTTGTAGAGTGAAA----GAGAGACCAA-------CGAAACTAT------TCAGAaagag-----------------------atat--------ccaaaaaacgattttcaatGGATACATAACA
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2337674 194 -  4500979 AGGGGCTTCTCGTTT-AAAAATCTGACG-ACGACAGCGAGTTATGAACTCTTAGCTGAATATTTTATCAGTATGATATCTGACTCcat------gttttcttttaaat---ttttcaaatctgaacaGCTTTC------------------------ACTTCTCGTTTTGActtccaaaaacca------------aaaa----aagaga---------------------------tagaaagtg---------------------caatat--------tgaaaaagt--------atgAATG---AATA
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold626    183763 233 -  1189296 TAAGGAccttcattt-gaaaatctgacgaaaaactgtgttttttgagctttcaACTGAATATCTGACCACTTTGATATCCGACTCTCC--------ttccttttgaat---ttttcaaatttgaaca--TATC------------------------GCT-------TGGACTtccaaaaagcaaa----------aaaacatgCGGAGTGCAC-------CAAACCAAT------TCAAATAAAGGCTTTGTAATATATTGAAATGGCATATGATgatgattgaaaatt--------ttggcag---ggtg
i caeSp111.Scaffold626  I 70 C 0
s caePb3.Scfld02_0       3874516 171 +  4147112 CCAGGCGTCTTGTTA-AAAAATCTGACGAAAAACTGTGAGTTATGAACTCTTAACTGAATAGTTGAGCACGTTGATATCTGACTCCAc--------ttgcttttgaat---ttttaaaatttgaaca--tttt------------------------gctCA-----TGAACTTCCAAAAAGCAGC----------GAAA-------------------------------------------------------------------GCATat--------ttaaaa--t--------tcaataa---aacg
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18194   786127 219 +   823664 ------ccatattta-aaaaatccgACG-AAAACAGCGAGTTATGAACTCTTG-TGGAATTCGTGATAACTCTGATATCTGATTCTTT------------TTTCGAAt---atcaaaaaacgaaaaa--aaggaaggaagaCGAAGCGAATTGGTgagctct-----ctctctcttttttaaCAGT----------GAAA----AAGGGGTGGGGTGTGGTCGGAATCATGCCCaattaaaaagaa-----------------------------------atgaaa--t--------acATATA---AACG
i caeJap4.Scaffold18194 C 0 I 936

a score=-5334.000000
s ce10.chrX              5612064 15 + 17718866 TTTCACTATTACATA------------
s cb4.chrX              10914678 24 + 21540570 TTTTAC-ACAACGTA--ACGTTTCATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2337868 26 -  4500979 GTTTGC-AATACATATTACTATGCTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    183996 16 -  1189296 gttcaa-aaaacaga--ga--------
i caeSp111.Scaffold626  C 0 I 37
s caePb3.Scfld02_0       3874687 16 +  4147112 TATTCA-ATAACAGA--GA--------
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold18194   786346 936 +   823664 I

a score=-1549.000000
s ce10.chrX              5612079 35 + 17718866 --GTATTCAACCAGCTGGCTATAACTTTTGCAAACTA
s cb4.chrX              10914702 35 + 21540570 --GTGGTCATAATAACAGTagcaaagtttgaaaactg
i cb4.chrX              C 0 I 36
s caeRem4.Crem_Contig0   2337894 35 -  4500979 --GTGACCAGCTGACTAGGGGAGTAGTGTGACCGGTG
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3874706 35 +  4147112 GTATGCTCAGCTGACTACTGACCT--TTTCAAACATA
i caePb3.Scfld02_0      I 3 I 11
e caeJap4.Scaffold18194   786346 936 +   823664 I
e caeSp111.Scaffold626    184012 37 -  1189296 I

a score=-2405.000000
s ce10.chrX              5612114 23 + 17718866 TTGGAGGTCAAAAAAACA-AGAAT---
s caeRem4.Crem_Contig0   2337931 16 -  4500979 -------TCAAAGTAaca-agaat---
i caeRem4.Crem_Contig0  I 2 I 38
s caeSp111.Scaffold626    184049 20 -  1189296 ------ttggaaatgaaa-agaggtGT
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       3874752 21 +  4147112 ------TTAACagtgaaacataaaaat
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I
e cb4.chrX              10914737 36 + 21540570 I

a score=34312.000000
s ce10.chrX              5612137 267 + 17718866 ---CTGAATCAAAAAA--------------------------TATATAAAAATTTGATCAG------------TTCTTCG----TCTCCGGAC-AGGTTTCTGAACTCTGGCACAC-------AACTAAATGA--ATAGCAAGGGCGTGCAAATATCCGGC-GCACAAAATCT-TGCGCT------TCAAAATTAAA-GAACTCGTCTCTGATTCCTGAACATTGACATT--GCTATCTAACAGACATCTTAGCTTTCCCACCAGGGATATTTTCAGGGAACATCTGTGCGTTTT-------CCAGTACCCCCGCTT----------AGCCTTTCTTGAAATGTCAGAGT
s cb4.chrX              10914773 203 + 21540570 ---CTCGAACGAATAA--------------------------TCTTCAAAGATC--ATCAGCA------AACCCGTCTCA----TCTCCGGATGGGGTTTTTGAACTGTGAGAGTG-----------GGGCGACCGGAGCAAGGGCATGCAAATATCCGGTCGGTGAAAAACT-TGTGTT------T--AAATTAAATGAATTCGTTTCTGATTCGTGAGCATTGGATCT----TATCT-------G-TCTCACTTTTTTGCCTAAATAATTCTGA--------------------------------------------------------------------------
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   2337985 254 -  4500979 ---CGGGGATCCATAA--------------------------TCTTCAAAGATC--ATCAGCACGTTCTAAGCAGTCTCA----TCTCCGGAT-GGGTTTTTGAACTGTGGACATGGCAGAAAAAGTGAGTGA--GAAGCAAGTGCATGCAAATATCCGGT-----GAGAACT-TGTGCT------TCGAAATTAAATGAATTCGTTTCTGATTCCTGAGCATTGACACC----TAACTAATAGACA-CCTAGACATCCCAccgaa--aattctgagcaagcgtgtttttcaatt------tttggaacgCCAGTAT---------------------------------
i caeRem4.Crem_Contig0  I 38 I 76
s caeSp111.Scaffold626    184069 260 -  1189296 TTGCTAGAGGGAATAA--------------------------TCTTCAAAGATC--ATCAG------------AGGCTCA----TCTCCGGAT-GGGTTTTTGAACTGTGGAGGAC---------GTG------------AAGGGCAGGCAAATATCCGGT-----GGAAAGT-TAGTCGAAAC--TCGAAATTAAAGGAATTCGTCTCTGATTCCTGAGCATTGGATCT----TGTCTAATAGACACCCTAGACATCTCA-------AATTCTGAGCTagcatgtttttttttc-----aaacggaACACCCACTTCATTTATATATGGCTTCCATGAAATGTCAAATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3874773 297 +  4147112 ttgatagaaaaaaaaatgcaaaaaaaagttctgaagaaAGATTCTTCATAGATC--AGAATT----------CTGCCTCATTTTTCTCCGGAT-GGGTTTTTGAACTGTGGAGGAG---------AAGGACAA--GGACCAAGGGCAGGCAAATATCCGGT-----GAAAGTTGTGGTTCTCTCCTTCGAAATTAAATGAATTCGTCTCTGATTCCTGAGCATTGACTCTTATCTATCTAATAGACA-TCTAGAC--------------ATTCTGAGCCACCATGTcgtgtttttcggaaaaacggAACACCTTTCTCA---------GGCTTccttaaaatttcaaagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I

a score=-18880.000000
s ce10.chrX              5612404 155 + 17718866 GCAATCACTGAAATTTTCAGACTGTACTTTTTAAATGAGTTCATGTTAGGTTTCAGATGGAAAACAAAAACGCATAATGGGGGTAAATCGTTGTTTTTTCTTGTTTTGAATTTTTGAAAAATTCGGAAAATTCGAAAAAAGAAGGATTTTTAAAA
s cb4.chrX              10914976 110 + 21540570 GCGATGAACATGTTTTTCGAAGTGAAC-----------GCCCATCTCAGGCTTCTCATG------GAAAattaaactttcaaatta----ttgttcctcttctttctga-----taaaaaac------aactaaaaacaaaa-------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    184329  25 -  1189296 -------------------------AC-----------GGttat---------------------agaaaaacaattttccg-------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3875070  32 +  4147112 -------------------------cc-----------GCTCAC------------------------Gacacatttttcaggaaa-----------------ttccga----------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I
e caeRem4.Crem_Contig0   2338239  76 -  4500979 I

a score=-91325.000000
s ce10.chrX              5612559 507 + 17718866  
s cb4.chrX              10915086 230 + 21540570  
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   2338315 292 -  4500979  
i caeRem4.Crem_Contig0  I 76 I 7
s caeSp111.Scaffold626    184354 270 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3875102 300 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I

a score=-4124.000000
s ce10.chrX              5613066 28 + 17718866 AGTTGAGAGCTCCATTTCAAGTGTCCCT
s caeRem4.Crem_Contig0   2338614  2 -  4500979 -------------------ag-------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    184624 11 -  1189296 --------------TCTCAAGTGCC---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3875402 19 +  4147112 -ATT-----CCTTTTCTCAAATGCC---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I
e cb4.chrX              10915316 22 + 21540570 I

a score=131382.000000
s ce10.chrX              5613094 422 + 17718866  
s cb4.chrX              10915338 461 + 21540570  
i cb4.chrX              I 22 C 0
s caeRem4.Crem_Contig0   2338616 426 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    184635 426 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3875421 443 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   786346 936 +   823664 I

a score=105307.000000
s ce10.chrX              5613516 192 + 17718866 AGCGAAGGACCGAAC------------AAATGAAGAA--TTACTGGACGATTTCTGATC-GAATGG-----------CACAC------ATGAATCATGACCTGCC-------GCATGAACAAAACTGATGTGAT------AAAGAGAAAGGAAACGCTGAGTTGGTCTTTTCAATTGAGACT-CTC-TTGTTTTGTGATCAA-----CTAGCCAGAAGATAAAGGAACGGAAATGG-CGTTCCGT
s cb4.chrX              10915799 219 + 21540570 AGTAAACTGATAGAAAT----------AAGTGAATAA--CTAAGAGg-gatttttgatc-gaaaagaaaaactcTAATACACTCAAAAATGAATCATGACCTATCCAGCCGTGCATGAGCAAAGCTGATGTGAT------AAAGAAAGGGGAAACGCCGAGTTGgttttttgtattcaaaaCGATT-CTGTTTTGTGATCAA-----CGAGACAGAAGATAAAACAATGGAACAAGCCTTTCCGA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2339042 219 -  4500979 ATTGAAGGAATGGAAGTGTAGggggaagaatgaaaaa--tggaatgacGATTTTTGATC-AGAAGG-----CTGTAATATACTC-AGAATGAATCATGACCTGCC-------GCATGAGCAAAACTGATGTgat------aaagaaaaaggaaacgcCGAGTTGGTCTCTTCTATTGAGAAC-ACT-TTGTTTTGTGATCAACC-AGCGAGCCAAAAGATAAAAGAACGGAACTAG-TTTTCCGT
i caeRem4.Crem_Contig0  C 0 I 486
s caeSp111.Scaffold626    185061 216 -  1189296 aaagtagaaagggcagt-caaggaagcgaatgaaaaatgtcgAATCGAGGTTTCTGATC-ATAAGG-----TTGTAATATACTC-GGAATGAATCATGACCTGCC-------GCATGAGCAAAACTGATGTGat------aaagaaagaggaaacgCCAAGTTGGTCTCTTCCATTGAGAAC-ACT-TTGTTTTGTGATCAA-----CCAGCCAGAAGACAAAAGAACAGAACCCA-CTCTCCGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3875864 198 +  4147112 --AGAAGCAagagta------------aaatgaaaaa--ttgggttgagatttttgatcaaaaagg-----CTGTAATATAC------ATGAATCATGACCTGCC-------GCATGAGCAAAACTGATGtgat------aaagaaaaaggaaacgcTGAGTTGGTCTCTTCTATTCAGAAC-ACTCTTGTTTTGTGATCAA-----CCAGCCAGAAGATGAAAGAACGGAACTAG-CCCTCAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   787282 197 +   823664 Agtgaaattttaaga------------aattgaagaa--------aacgaTTTTTGGTC-ACAGAA--------TCATACACAC-GCAATGAATCATGACTTACC-------GCGCGAGCAAATCTGATgtgataaaaagaaaaaaaaaggaaatactGATCTATTCTTT---------AAC-ATCTTTGTTTTGCGATTAAAAGAAATAGGGATGAAAAGAAAGAACGGACGCat-atcgcatt
i caeJap4.Scaffold18194 I 936 C 0

a score=-1490.000000
s ce10.chrX              5613708 2 + 17718866 -TC
s cb4.chrX              10916020 1 + 21540570 -T-
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold626    185277 2 -  1189296 -TC
i caeSp111.Scaffold626  C 0 I 594
s caePb3.Scfld02_0       3876062 2 +  4147112 -TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   787479 2 +   823664 tt-
i caeJap4.Scaffold18194 C 0 C 0
e caeRem4.Crem_Contig0   2339261 486 -  4500979 I

a score=615.000000
s ce10.chrX              5613710 4 + 17718866 TCAC
s cb4.chrX              10916021 4 + 21540570 TCAC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3876064 4 +  4147112 ACAC
i caePb3.Scfld02_0      C 0 I 714
s caeJap4.Scaffold18194   787481 4 +   823664 ttaa
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    185279 594 -  1189296 I
e caeRem4.Crem_Contig0   2339261 486 -  4500979 I

a score=-313.000000
s ce10.chrX              5613714 5 + 17718866 ACTCA
s cb4.chrX              10916025 5 + 21540570 ATTCA
i cb4.chrX              C 0 I 379
s caeJap4.Scaffold18194   787485 4 +   823664 acta-
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3876068 714 +  4147112 I
e caeSp111.Scaffold626    185279 594 -  1189296 I
e caeRem4.Crem_Contig0   2339261 486 -  4500979 I

a score=1350.000000
s ce10.chrX              5613719 24 + 17718866 AAAATTGGTAGGTTT-TATCTTTCA
s caeJap4.Scaffold18194   787489 25 +   823664 aaaattGGCGGGTTTCTATATTTCA
i caeJap4.Scaffold18194 C 0 I 2324
e caePb3.Scfld02_0       3876068 714 +  4147112 I
e cb4.chrX              10916030 379 + 21540570 I
e caeSp111.Scaffold626    185279 594 -  1189296 I
e caeRem4.Crem_Contig0   2339261 486 -  4500979 I

a score=0.000000
s ce10.chrX              5613743 1184 + 17718866  
e caePb3.Scfld02_0       3876068  714 +  4147112 I
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10916030  379 + 21540570 I
e caeSp111.Scaffold626    185279  594 -  1189296 I
e caeRem4.Crem_Contig0   2339261  486 -  4500979 I

a score=101.000000
s ce10.chrX              5614927 178 + 17718866 GTGTTTTTATTTTTTACCACCTTTTTA--TTGACCAATTAGATTTAATATCACATGT---TCAGCCACAAGTTTAAG-------CACCCA---------------TTTAATTAGAGGGAAAAAAGAGAAGC-CCATTAATTATGTACATAGTTGAAATTCAATAGGATAGAA-AGTTTAAAAATTAAAAAAAAAGGATTGAGA---TATG
s cb4.chrX              10916409 208 + 21540570 gcgtttttgttttttcacaCCTTTCCAAATTGACTACCtttttttACCGCTTTATGTGGGCCAGCAAAAAACTTGTGATCTGCACACCCTGTGACTgatccagatttttttttcatggaaaagCTCGGTGCACCGGAAATTAT--ACTTTTGTGGAATTAGATTTTATGGAATAGTAttaaaattcctgaaaaacacGTCAATGtttttt
i cb4.chrX              I 379 C 0
e caePb3.Scfld02_0       3876068 714 +  4147112 I
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e caeSp111.Scaffold626    185279 594 -  1189296 I
e caeRem4.Crem_Contig0   2339261 486 -  4500979 I

a score=546.000000
s ce10.chrX              5615105 1 + 17718866 T
s cb4.chrX              10916617 1 + 21540570 t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2339747 1 -  4500979 T
i caeRem4.Crem_Contig0  I 486 C 0
s caePb3.Scfld02_0       3876782 1 +  4147112 T
i caePb3.Scfld02_0      I 714 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e caeSp111.Scaffold626    185279 594 -  1189296 I

a score=99640.000000
s ce10.chrX              5615106 254 + 17718866 AGACGTGATAAA-CACAAAC-GGATGC-AAGAAATGACGTTTAAGCGGAAAATATTG------------GTGGAAAAAA------CTTTTT-GAGCCGATTTTTAAACTTAGCGGGCTC-TTGGACATACGCAATCCTACCT---CAAAAATATTTAGTGCTAAACGTGTTTCGCCCATGGCTATTTTCCCACATTTG----AAA-----TCTTCTCC----GGAGGCTTTCAGGGCAAAACTGG---TCAGAACATTGTCACGTCGATAATTATCAAG-TGGAAAAA----------TAGAAACGG------------------------
s cb4.chrX              10916618 282 + 21540570 AGACGTGATAAATCAAAACC-GGATGTCCAACAATGATGAAAAGCAGGAAACTTTTTTCACCCCTCATTTTAGAAAAGGGAACCACTTTTCAGAGCCGATTTACAAACTTAACGC---A-GCGCGTATGAGCAAAAGCA---TACCAAAAATATCCAGTGCT-AACGTTTTTCGCCCTTGGCTATTTTCTcagattcgagaaaaa-----atttctccCAGGGAAATCTTCTAGGGCAAAA-TGG---TTAAAACGTCCTGacgacatttttca--gat-tgggagaattt----ttccagaagccg------------------------
i cb4.chrX              C 0 I 71
s caeRem4.Crem_Contig0   2339748 275 -  4500979 AGACGTGATAAACCAAAAGC-GGatgt-caaaaatgatgtgaaacaggaaacttttt-----ctcttttctagtgaaaaaacacacttttc-gAGCCGATTCATAAACTTAACTG---C-CTGCGCATACGCAAGCACACCGCGCCAAAAATATTCAGTGCT-AACGTGTTTCGCCCTTGGCTATTTTCCCACATTTG----AAA-----TCTTCTCC----GGAGGCTTTCAGGTCAAAA-TGG---TTAGAACATCGTCATGTCAATCATTG--GAGAtaggagaaaatgaaattcttgGAACTG------------------------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    185873 284 -  1189296 AGACGTGATAAATCTGGCACAGGATGT-TAAGAATGATGTAAAACaggaaacttttt--cttctagaaaacagaaaaaacacacACTTTCT-GAGCCGATTTATAAACTTAACAG---C-CTGCGCATACGCAAGCATACCTCaccaaaaatattcagtGCT-AACGTGTTTTGCCCTTGGCTATTTTCCCAcatttg----aaa-----tcttttcc---GGGAGGCTTTCAGGGCAAAA-TAG---TTAGAACATCGTCACGTTAATTATCG------GGAAACGAATCGGAATTCTTGAACCCAA----------------AGAACTA
i caeSp111.Scaffold626  I 594 C 0
s caePb3.Scfld02_0       3876783 307 +  4147112 AGACGTGATAAATCTAAAAC-GGATGT-CAAACATGATGTAAAACAGGAAACTTTTT--AGgagaaaagacagaaaaaa-acacacttttt-gaGCCGATTTATAAACTTAACAG---CTCTGCGCATACGCAGGCATACCTCGCCGAAAATATTCAGTGCT-AACGAGTTTCGCCCTTGGCTATTTTCCCACATTTG----AAATAATCTTCTCTCC---GGGAGGCTTTCAGGGCAAAA-CGGTTATTAGAACATCGTCACGtcaattattt------tggaaaagtggGGAAAGCTTAAAGTCAGTTCCTGTTGCTTACCTGGAATAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=-23904.000000
s ce10.chrX              5615360  73 + 17718866 --------------------------------------------------------CTAATTTCATTGAAATCGATTAAGACAATTCTCATTTTGAATTTGTTTTT--------------TTTAATGTGTTTT--TCAGACCACA-------------------------------------------------------
s caeRem4.Crem_Contig0   2340024 164 -  4500979 --------ttaaattcaaa----agattcgaGAGATCAATTCAAGTGACATTCGAATGAATTAGGCGGgggttgact-----atttttcattatgcatttgtttttgaagaatatttcTGTTTTAGGTATTGG--TCCAGTTAATCGGAAGAAGTGAATTTTTGGCGAGCGTTGTATTGGATA-----------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    186157 114 -  1189296 GGAAATCCCTATATCAGAA----GAGTT---------------------AAAGAAGTTGATTGGAACGTAACagatt-------------------ctttgttttcaa------------caaCGGTTCTCTG--CCTGATTCATAGG---------GTTTTTGGAA---------TAAGATAA----------AGCGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3877090 145 +  4147112 CAAACTtattgaattgagattttgaatta-------CAATTT---TGGGAAATGAGGTAAT--GACCGGGCTGGATT-----GTT----------ATTTTATTCCTGA------------TTTCAGGTTTTAGGTTTTGACTATTaga---------ttttttggcaat-------ttcGGTAAatgaattctgagcaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10916900  71 + 21540570 I

a score=-5443.000000
s ce10.chrX              5615433 242 + 17718866 -GAGCC----TACAGACTCTCAGCTAATTA-CAAAATTGAAGTGATTCACTTAT--AGTCTCGGAGAACATTTTCAAGGAAATTGAATGGGTCCCGAA------------C----ACCACCCATACAAGA---------------AAAATAAA------------------GTCACATGGGGAGAATGGGTAGAAGTAGTG----ATGAGATATGAAGCGAATCGAATGAAATTT-----TGAATTTCGG-AGT----------------AGA-------------GGTTGAAGAACA-GGGACTAGTTGAGTTAAGAAGTTCTAGGGACTAGAGAGAA
s cb4.chrX              10916971 264 + 21540570 GAGTCCATT-TCCAGACACCCTTCTGATCT-TATTATTCTAAAGATTCAGTCAT--ATACC----------ATTTCAGGAAATTGGTTGGC--CCAAA------------CCAGAACACCATACACAGag---------------gaaaaaat---catgaaaaaaaaac-acaatgtGACTT---TCAG---------------AGAATATATGAAGCGAAACGAATTAAATC------ACAGTCACAG-AGTAATGCGAGATAGGAAGAAAATAAAGTTCTAATGGTTAAGGAACATTGCCCTACTTGGATTAGGAATTTCGGAGAACCAGAGA---
i cb4.chrX              I 71 C 0
s caeRem4.Crem_Contig0   2340188 267 -  4500979 -AAGCTATG-TCCAGACAAACAGTCCTCCA-TGATATCAAAACCACTCACCCAT--TGTCTAACTGGA---AATTAAGGAAATTGGATGTG--CCGAA------------C----ACCACGTATACAGGC---------------CAACAGATCGGCAGAAAAACAAAGC-AAATCGTAGATTGAGTAAG---AGATGTTGGAGCAGAAGATATGAAGCGAAACGAATTGGTTA------GGATGTACAG-AGT----------------AAGATAAAATTGTGATGGTTAAGGAACA-CGACCTAGTTTGATTAAGGATTTCAAATAACCAAAGA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    186271 240 -  1189296 TGGGCTCGGTTCCGGTCTCCCTGTTAATTAtgagaattcaatgaat----------tgtCCAACAGGCACAACACCAGGAAATGAGATAGG--AGGAACGCCCCGCTTTCC----CCCACCCATACTGTC---------------Aaaataaa-----acgaaaacaCGTGAAAACCTAGATGAGTTGAGTAGAAATATTGGAGCAAAAGATATGAAGCGCAACGTATTTGATT------AGTGAGGCTATAGT----------------AAAACAAAGTTCTAATGGTTAAGGAACA-----------------------------------------
i caeSp111.Scaffold626  C 0 I 35
s caePb3.Scfld02_0       3877235 237 +  4147112 tggtCTA---CCCAGACATCCTGttaatca-gaattttcaactgattcaCATATTGTTTCAGACAATTAC-CTATCCGGAAATTGGAAAG--------------------C----ACCACCCGTACAGCCAATGTCTggtactgaaaaataat-----aaagaaaaaagc-acAACATGAAGGTGctggacaaaa----------aaaagatgtggGGCGTATCgtattgagtttttggaaataacaCAGTAGT----------------AAGACAAAGTTCTAATGATTAAGGAACA-----------------------------------------
i caePb3.Scfld02_0      C 0 I 39
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=-5138.000000
s ce10.chrX              5615675 40 + 17718866 AGTGATTTGAGGTCTTACTGGCAATGCTAACTATACAATT
s cb4.chrX              10917235 18 + 21540570 ACCGGATGGTCA-------GGGGCC---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2340455 25 -  4500979 ACCAGATGGACCTCTTACTTCGACT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3877511 19 +  4147112 CACAGATAGTCACCCAACT---------------------
i caePb3.Scfld02_0      I 39 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e caeSp111.Scaffold626    186511 35 -  1189296 I

a score=56719.000000
s ce10.chrX              5615715 568 + 17718866  
s cb4.chrX              10917253 668 + 21540570  
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   2340480 691 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 176
s caeSp111.Scaffold626    186546 577 -  1189296  
i caeSp111.Scaffold626  I 35 C 0
s caePb3.Scfld02_0       3877530 570 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=-14056.000000
s ce10.chrX              5616283 90 + 17718866 AGCACATATTCAGTTAAAATAAAAGTTATACGATAGGCAAAAAGTAGGCAATAAAACACTGCAAATTTAATTAAAATTTTGCAGAATT-CT----------
s cb4.chrX              10917931 84 + 21540570 -gtaC-TACACAATTA----------TATTCGCAACATATTGTGCTTGTTGAAAAGAAGCACATAGAT-CGcacgatttt---cagtt-ttgcatAATCgc
i cb4.chrX              I 10 I 56
s caeSp111.Scaffold626    187123 22 -  1189296 ----------------------------------------------------------------------CTATAATTTTATGGagtt-ttct--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3878100 19 +  4147112 -----------------------------------------------------------------------TACAATTTT---TAGTTATTCC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e caeRem4.Crem_Contig0   2341171 176 -  4500979 I

a score=-4232.000000
s ce10.chrX              5616373 74 + 17718866 CATGCTCTCGGCCAGGCGTCAACGCCGAAAACTGTAAAACGGCAAGCTGCTGATTTGCCTAGTTTGCCAAAAAC
s caeSp111.Scaffold626    187145 59 -  1189296 gatgtttta---------------TCGAAGATCGTACGCCTTCCGGTCATTGATAATAGTAGTATTCAATTCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3878119 39 +  4147112 TTTCTCTTC---------------ACAAAAA---TACTCCCACAGTT-----------------TCGAACAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10918015 56 + 21540570 I
e caeRem4.Crem_Contig0   2341171 176 -  4500979 I

a score=-3418.000000
s ce10.chrX              5616447 29 + 17718866 AATTGAAAATCGGAGATTGGGCAGCTTTT-
s cb4.chrX              10918071 20 + 21540570 aattgaaaa---caaacaaGACA-------
i cb4.chrX              I 56 C 0
s caeSp111.Scaffold626    187204 29 -  1189296 Gcttgaaaatt-taaactGGTTAATGAACT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3878158 27 +  4147112 ACGTAAAattt-ccaact--tcaaaggaTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e caeRem4.Crem_Contig0   2341171 176 -  4500979 I

a score=-27551.000000
s ce10.chrX              5616476 119 + 17718866 CAAATATGCCTAAAATTC------GAAAAATGGCCTTTTTTGTCAGTTTGACTAAGCCACCGAAAATTTCTAAACCTATC--AATTTTCTTATTTGCCAAAAAAATAGTAAGCCAAAAAAACTCAAA
s cb4.chrX              10918091  48 + 21540570 ---A-------GAGAAGC------CCAAGATG---------------ATGATT---------------TCTAGACTCATG--GTTTGC-----------AAttcaaa--------------------
i cb4.chrX              C 0 I 82
s caeRem4.Crem_Contig0   2341347  71 -  4500979 caaa-------cAGAACCGAATTTCGAAGCCGT------------ATATGGTT---------------TTTTGACTCTCG--GCTAGTAAGTCAAGCCAAATTCGAA--------------------
i caeRem4.Crem_Contig0  I 176 I 30
s caeSp111.Scaffold626    187233  74 -  1189296 -----------GAAATGT------GCAAGATC--------------TGTGAAT--------GG----TTCCAGACCACAG--AATTCAGTTCCATGAGCAAAacaaaggaaatgaaaaa--------
i caeSp111.Scaffold626  C 0 I 52
s caePb3.Scfld02_0       3878185  66 +  4147112 -----------------C------GTAGATCG--------------TATGACT-----TCCGG----TTTTTGATAAtcgttgtttttatttcaagctcaaaaagccagaaa---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=0.000000
s ce10.chrX              5616595 2 + 17718866 AA
e caePb3.Scfld02_0       3878251 0 +  4147112 C
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10918139 82 + 21540570 I
e caeSp111.Scaffold626    187307 52 -  1189296 I
e caeRem4.Crem_Contig0   2341418 30 -  4500979 I

a score=-3415.000000
s ce10.chrX              5616597 56 + 17718866 TCACTTTCTCATTTTCAAAATTATTATTTGCATATTTCCTATATTTAATCGTCAAC---
s caeRem4.Crem_Contig0   2341448 45 -  4500979 -----------TTACTAGACAGATCATCTACATGTCTC---TGTTAATTGGACACCGAC
i caeRem4.Crem_Contig0  I 30 I 4
s caePb3.Scfld02_0       3878251 30 +  4147112 ----------tttttcaaagtgaaaa---acat-------------AATGCGCACA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10918139 82 + 21540570 I
e caeSp111.Scaffold626    187307 52 -  1189296 I

a score=0.000000
s ce10.chrX              5616653 33 + 17718866 CACCCGAAAAGATTTCACaaatataaaatattt
e caePb3.Scfld02_0       3878281  0 +  4147112 C
e caeJap4.Scaffold18194   787514 2324 +   823664 I
e cb4.chrX              10918139 82 + 21540570 I
e caeSp111.Scaffold626    187307 52 -  1189296 I
e caeRem4.Crem_Contig0   2341493  4 -  4500979 I

a score=-32905.000000
s ce10.chrX              5616686 136 + 17718866 ttaaaaaCAAAA-------TGCTAAACCGTGATGGTTTGAAAGCGGCTTCAAACTCAAACTGGAGCCAAAACAAAGGCACAAAAGACTTGAAATCTG-------------AGATCACCAGACGGATCATACACATGTAAATTCAACACCGTCTCCA
s cb4.chrX              10918221  85 + 21540570 ctgaaaacaaaaggaaaCGTGATAGGAAACGGTG------------------------------TCTAGAACAGATT-------GTCTGAAAGTTGA-------------AGAACAAATGGAGGATACTAC-TCCA--------------------
i cb4.chrX              I 82 C 0
s caeRem4.Crem_Contig0   2341497  65 -  4500979 CAAAGAACAATAGTTA---tgttcagaaatttcga--------------------------aactctgAAATGGA------------TACAactcaa-c-----------aaaacaaa--------------------------------------
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    187359  80 -  1189296 ttaaaaacaaaa-------------------------------------------------gtttcgaaacaaGTGG-------AAACGGATAGAGAGCCCAACG-----AAACAACATCATCCAGAATAC-TTGGT---TTCAA-----------
i caeSp111.Scaffold626  I 52 C 0
s caePb3.Scfld02_0       3878281 142 +  4147112 -AAAATACTAAAACCC---TGGgatgattttttggctct-ttgtGTGGGCAAATTCGGTccgattcaaaaacaaaga-------agatgaaaaacga-CCCATAGATCATAGACAGGATCATGAAAAATAC-CTCGTAAATTGGACACCATGTCTA
i caePb3.Scfld02_0      C 0 I 113
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=-3527.000000
s ce10.chrX              5616822 54 + 17718866 AAAAAAACATCATCGGGTGCATTACTGTTGGAGTTCACTGCGACCGC-GCG-TGCG
s cb4.chrX              10918306 42 + 21540570 ACAGAATTGCTGTCGA-------------AGAAAAGGATGCATCCGCCATGCCGC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2341562 39 -  4500979 --aaacccaTTGGCTG-------------GAAAGGAGATGGATCCGCAATG-CGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    187439 26 -  1189296 --------------CG-------------GAGAAGGGTTGCATCCGC-ATG-TGT-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3878423 113 +  4147112 I
e caeJap4.Scaffold18194   787514 2324 +   823664 I

a score=-54.000000
s ce10.chrX              5616876 30 + 17718866 AAATAAAGATCGTCAGAT--------TCGA-GCTCTCAG-----
s caeJap4.Scaffold18194   789838 44 +   823664 aaatgagcatcGTCAAATATATCGGCTCGACGCATCCCGTGAAT
i caeJap4.Scaffold18194 I 2324 C 0
e caePb3.Scfld02_0       3878423 113 +  4147112 I
e cb4.chrX              10918348  0 + 21540570 C
e caeSp111.Scaffold626    187465  0 -  1189296 C
e caeRem4.Crem_Contig0   2341601  0 -  4500979 C

a score=72619.000000
s ce10.chrX              5616906 173 + 17718866 TG--ATATATGCGTTTTC-TAGATCTCA--CTTGACTT--CGGGAGGCTC----AAAAAAGAAGCGGCAATGCTTCTG-AAAA---------CGACTCGGTGTT--TA--TTGCAAACAAAAAACAAGTGGCGACG--TAAAGAAGGAAG-------AGAAGGGTCCCCCCGGCGG----CTTGCTTCTGATTGTCAAATGAGGGGATTTA
s cb4.chrX              10918348 169 + 21540570 TG--ATATATGTGTTTTTGCCGGTTCGAGGCTtgactc----gaa------------aaaaaagtga----gctCTTC-TAAAATATACTGCCGCCCGG-TGTTTATATTTTGCCAACAAAAAACTGGTGGAGAAGTTTGAACGAGGAAA-------AGAAGGGTTCCCGACGC-----------ATCTCATTGTCAAATGAGGGAATTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2341601 160 -  4500979 TG--ATATATGTGTTTTTGCCGGTTTGA--CTTGACTT----Ggagactc-------gaaaaaatga----gctTCTG-AAAA---------CGTGCCG-TGTT--TATTttgcaaacaaaaaacaagtggCGACG--TGAAGGAGGAAG-------AGAAGGGT---CTACGC-------TTTTTTCTGATTGTCAAATGAGGGGATTTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    187465 173 -  1189296 TGATATATATGTGTTTTTGTCGGTTTCA--CTTGACTT----CAAGActtgaacgaaaaaaaagtga----gctTCTGAAAAA---------CGCATCGCTGTT--TG-Tttgcaaacaaaaaacaagtggcgacg--tgaaaaaaaaagaag--ctagGAGGGT-CCCCTTGC-----------TTCTGATTGTCAAATGAGGGGATTTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3878536 150 +  4147112 TG--ATATATGTGTTTTTGCCGGTCTGA--CTTGACTT----gaagactc-----aaaaaaaagtgt----gcatCTG-AAAA---------CGCATCG-TGTT--Ta-tttgcaaacaaaaaacaagtggcaagg--aaagagagaagggTC--CTGAGAA--------------------------CGATTGTCAAATGAGGGGATTTA
i caePb3.Scfld02_0      I 113 I 160
s caeJap4.Scaffold18194   789882 169 +   823664 TG--ATATATGTGTTTTC--------GA--CTTGACTTTTTTCAAGACTC-------AAAAAAGTGA----GCTTCTG-AAAA---------GG---CG-TGTT--Ta-tttgcaaacaaaaaacaagtgGGGGAC--TGAGAAGGAGCGGTGGAGTAGTAGGGTCCTCCCTGCCGTCTTCTCGCCTCTGATTGTCAAAAGAGCGGACCCC
i caeJap4.Scaffold18194 C 0 C 0

a score=2976.000000
s ce10.chrX              5617079 25 + 17718866 ACGTTCTTTTTTC--TCGCTTATAGAC
s cb4.chrX              10918517 27 + 21540570 GCGttcgttttgaaaaagtgtctAGTC
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2341761 23 -  4500979 ACGCTTTTCGT----ACGCTTATAGTC
i caeRem4.Crem_Contig0  C 0 I 136
s caeSp111.Scaffold626    187638 21 -  1189296 AAGCTTCTC------ATGCTTATAGCC
i caeSp111.Scaffold626  C 0 I 14
s caeJap4.Scaffold18194   790051 19 +   823664 ----TCGTTTT----CTGCTTATAGTC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3878686 160 +  4147112 I

a score=-137.000000
s ce10.chrX              5617104 1 + 17718866 T
s caeSp111.Scaffold626    187673 1 -  1189296 G
i caeSp111.Scaffold626  I 14 C 0
s caeJap4.Scaffold18194   790070 1 +   823664 T
i caeJap4.Scaffold18194 C 0 I 2016
e caePb3.Scfld02_0       3878686 160 +  4147112 I
e cb4.chrX              10918544 7 + 21540570 I
e caeRem4.Crem_Contig0   2341784 136 -  4500979 I

a score=-837.000000
s ce10.chrX              5617105 34 + 17718866 AGTTGATTTTGATTCAAATAAGAATCAAATAAGC
s cb4.chrX              10918551 22 + 21540570 ----------GAAAACAACAGAA--CAAAGATAA
i cb4.chrX              I 7 C 0
s caeSp111.Scaffold626    187674 33 -  1189296 AGGTGTCATCTGATCCAGTAGGG-TCAAAGAGAC
i caeSp111.Scaffold626  C 0 I 90
e caePb3.Scfld02_0       3878686 160 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeRem4.Crem_Contig0   2341784 136 -  4500979 I

a score=-837.000000
s ce10.chrX              5617139 93 + 17718866 CTGCTGAGATT-TCTAGAAGTGTTCATAGTAAGTTCCAATTTTAATTTTCA-----GTAGTT---TTTCAACTACTATTTGCGAATATTTTAATAGATTTTG
s cb4.chrX              10918573 98 + 21540570 ATAATGTAATTATCTAAAAGCA--AATCGGAAAGACTAAAGATAAAATTCGTCCTCGTGGTTCCATTTGACCGTTTATACAAGAATAATTAAAATCATTC--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3878686 160 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    187707 90 -  1189296 I
e caeRem4.Crem_Contig0   2341784 136 -  4500979 I

a score=789.000000
s ce10.chrX              5617232 12 + 17718866 ATAGAGCAAGAA
s caeRem4.Crem_Contig0   2341920 12 -  4500979 ATAGTCTAAAGA
i caeRem4.Crem_Contig0  I 136 C 0
s caeSp111.Scaffold626    187797 12 -  1189296 ATCTATCAAGGA
i caeSp111.Scaffold626  I 90 I 8
e caePb3.Scfld02_0       3878686 160 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e cb4.chrX              10918671  0 + 21540570 C

a score=44824.000000
s ce10.chrX              5617244 366 + 17718866 -----------------ACAACAAAACAC----------AGAAGAAATAAAGC----CCAACGTACCCAGAATTGAGAAACAGAAACAAAAAACAAACCAATTTCAGAATCAAAGATGGAAAGCCGAGAAATTAGAA---TTGCA-ATTCCAAGTAACAATGAAAGTGAAAAAGACGG---------------CGAC--AATTC---CAGCAAA--ATCGCCACCGATGAAGGATGAATAACAAACACACGGA------CGCGCTGCTGGTTCGTCTTCTTCTTCTTGACACACACCGCGATTGGTTTATGGTTTCCTGCTCGTCCGAGCGTTTTTAAT--------AGTGTGTA---------------------TTTCAA--------AGTTAGTCATTGAAA-TAAGAA-TGAAACAATGCGCG-------ACTGGGAA---GAATTTGTAATGATCACTCATCAAGTGCG-TGGC
s cb4.chrX              10918671 339 + 21540570 ----------AAG---------------------CTGtaaaaagaaat------------------ccagaagcg-----------aaaaaa---gaccagaataagaattaag-------------gaattaaaaa---tggaa-atgac-aATGAcaattgagagagagagagagagagagagatgaaACCAGGA--GATTCCAGCAGAATACCACCGC-GGCA----AGGACGAAT----AACATAAGGAGGATTCCGC---GCTGGC------------------------------TTGGTTTATGGTTTCCTGCTCATCCGAGCGTTTTCAATAGGCTTAGTATATATACaaattttctcttcctctctttctcaaaaaaagttagttAGTCATTGTAAATGAGAATTGAAAcaata--------------agaaaagaaaattcataAGGATCATTCATCAAACACG-TGGA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2341932 339 -  4500979 GCATCTACCAAAGAGTGACACCATCTCACGTACCCTGCAGAATTGAATAATTC---ATCTATCTACCCAGAAAGA-----------CACAAAATTAGCCAAAATTAGAATCGAGAAT-------Tgagaattaaaaa---ttgaagattcc-AGTAACAAAGAAAAGA-------------------------ATGC--GATTC---CAGAATTCCATCGT---CG----AGGATGAAT----AACACACGGA------CGC---GTTGGCTCGC-------------GTACAC-CCG-AATTGGTTTATGGTTTCCTACTCATTCGAGCGTTTTTAAT--------TGCGTGTA---------------------TTTCAA--------AGTTAGTCATTGtaa---tgaaatgaaacaatgCG-G-------CCTAGGCAAG-AAATTTGTGAGGATCATTCATCAAGTGCG-TGGC
i caeRem4.Crem_Contig0  C 0 I 325
s caeSp111.Scaffold626    187817 311 -  1189296 -----------------ACAACATCTCAC-----GTACAAAATAGAATAATTCAA-AGGATACTACTCATGGATC----------------CAGCCGCCAAAATTAGAATCGGA-----------GAGAATTGAGAA---TCCG--AGAGC-ATtaacaaagaaaaga-------------------------atgcaTGATTC---CAGCAAACCGCCGCCGCCT----AGGATGAAT----AACACACGGA------CGC---GTTGGTTCGC-------------GCACACACCG-GATTGGTTTATGGTTTCCTGTTCATCCGAGCGTTTTTAAT--------GGCATGTA---------------------TTTCAA--------AGTAAGTCATtgtaa-tgaaaa-tgaaacaacgTG-G-------CTTGAAAAGG-GAATTTGTAAGGATCATTCATCATATGCG-----
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       3878846 298 +  4147112 -----------------ACAGCATCT--------------AATGAAATAATTCAGTCTCACCCTACCCAGCAAAT---------GACAAAAAAGCGGCCAAATTTAGAATCGG--------------GAATTGAGAATCGTCGG--ATTCC-AGTAACAAAGAAATA--------------------------------GAATC---CAGCATACCACCGCCTGC------GGATGAAT----AACACA------------C---GTTGGTTCGC-------------TCAC--------ATTGGTTTATGGTTTCCTGCTCATCCGAGCGTTTTTAAT--------TGCGTGTA---------------------TTTCGA--------AGTAAGTCATtgtaa-tgaaaattgaaacaatgcG-GGGCTCTAGTTGGAAA----AATTCGTAAGGATCATTCATCAAGTGCGGTGGC
i caePb3.Scfld02_0      I 160 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I

a score=302.000000
s ce10.chrX              5617610 2 + 17718866 AA
s cb4.chrX              10919012 2 + 21540570 AA
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       3879144 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 I 256
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    188128 0 -  1189296 C
e caeRem4.Crem_Contig0   2342271 325 -  4500979 I

a score=1090.000000
s ce10.chrX              5617612 10 + 17718866 GAAGAAATGT
s cb4.chrX              10919014 10 + 21540570 GAAAGAATGT
i cb4.chrX              C 0 I 281
s caeSp111.Scaffold626    188128 10 -  1189296 GTGGCGATGT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3879146 256 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeRem4.Crem_Contig0   2342271 325 -  4500979 I

a score=766.000000
s ce10.chrX              5617622 46 + 17718866 TGGAAAGAGAAGATATATATGGCATAAAATTG------AAAACACGACGTAT
s caeSp111.Scaffold626    188138 48 -  1189296 GTGGAATAAAATGTATATA----GTggaattgtttcaaaaagcacGAAATAT
i caeSp111.Scaffold626  C 0 I 178
e caePb3.Scfld02_0       3879146 256 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e cb4.chrX              10919024 281 + 21540570 I
e caeRem4.Crem_Contig0   2342271 325 -  4500979 I

a score=0.000000
s ce10.chrX              5617668 696 + 17718866  
e caePb3.Scfld02_0       3879146 256 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e cb4.chrX              10919024 281 + 21540570 I
e caeSp111.Scaffold626    188186 178 -  1189296 I
e caeRem4.Crem_Contig0   2342271 325 -  4500979 I

a score=234.000000
s ce10.chrX              5618364 32 + 17718866 CACGTAATATTCCAACTACGTGAGTTGGACCA
s caeSp111.Scaffold626    188364 23 -  1189296 CACTTGTTGATTCGACTATGTGA---------
i caeSp111.Scaffold626  I 178 C 0
e caePb3.Scfld02_0       3879146 256 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e cb4.chrX              10919024 281 + 21540570 I
e caeRem4.Crem_Contig0   2342271 325 -  4500979 I

a score=144524.000000
s ce10.chrX              5618396 938 + 17718866  
s cb4.chrX              10919305 952 + 21540570  
i cb4.chrX              I 281 C 0
s caeRem4.Crem_Contig0   2342596 871 -  4500979  
i caeRem4.Crem_Contig0  I 325 C 0
s caeSp111.Scaffold626    188387 875 -  1189296  
i caeSp111.Scaffold626  C 0 I 700
s caePb3.Scfld02_0       3879402 837 +  4147112  
i caePb3.Scfld02_0      I 256 I 40
e caeJap4.Scaffold18194   790071 2016 +   823664 I

a score=7440.000000
s ce10.chrX              5619334 114 + 17718866 ----------------------------------------------GAACATGGCTGGAAATTGGGGGAAAAACTGGAAAC----------------------GTTTTTTGCAAATGGAAAACTTAAGAAGGACGTT-----TTTTTGGAAGAAAAATTATTAGATTTACAACAAAATGTGTAC---GAA
s cb4.chrX              10920257 179 + 21540570 CTCTATTTGCTGCtccacgtttttttttgaaaatttttggggctttttGCCTACTTGGAAAGGGAGAGAAGGATGCGAAAAGgaataaacttgaaaaaatgcaagtttttgcaattttccaattttagaaGGACGCTCACA-ATTTTGGAAGATA---TATTAGA-TTGTGACGAAACATGTAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2343467 142 -  4500979 CCTC---------------------------AATTTTGGGtgttttttccttatttcgaAATGaggaaagaaacgaaaaaaaggagagttttt----------agtttttgcaatgaaaaaaataaagtagGACGCTTACA-ATTTCGGAAGACT---TATTAGA-TTGTGACGAAGAGTGTAT------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3880279 118 +  4147112 ---------------------------------------------------------gaaaatgaaaaaaagttggaaaaggagggaaaaatgcat-------tttttctgcagtt-gaaaattttagaaggacgtttacattttttggaagata---tATTAGA-TTGTGACGAAAAGTGTATACA---
i caePb3.Scfld02_0      I 40 I 22
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=-1384.000000
s ce10.chrX              5619448 13 + 17718866 ATGATCTCCTCTC
s cb4.chrX              10920436 13 + 21540570 ACTTTATAAGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2343609 12 -  4500979 AC-ATATATGGAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3880397 22 +  4147112 I
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=5091.000000
s ce10.chrX              5619461 15 + 17718866 CGCAAAATTGGGTTC
s cb4.chrX              10920449 15 + 21540570 CATAAAATTGGGTTC
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   2343621 15 -  4500979 CATGAAATTGGGTTC
i caeRem4.Crem_Contig0  C 0 I 64
s caePb3.Scfld02_0       3880419 15 +  4147112 CAGAGAGATGAGttc
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=-4471.000000
s ce10.chrX              5619476 24 + 17718866 -------------------GCGGTAAATGGTTTCAA------GTGAAGC------
s caeRem4.Crem_Contig0   2343700 49 -  4500979 gTTCTGTTATCaaaagatgatgaaaaatagcagaag------aaaaaacaaaaag
i caeRem4.Crem_Contig0  I 64 C 0
s caePb3.Scfld02_0       3880434 41 +  4147112 -----ggaattgaaa------aaaaaatgtttgcagtttttttAGGTTCAGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e cb4.chrX              10920464 35 + 21540570 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=-51183.000000
s ce10.chrX              5619500 237 + 17718866 ----------------------------------------------------------------GTATTTACGGGG-------------------GAATATAATCTTTTTTTCCTGAATTTTTTGTCG--GTTGAAAAACATTGATAAG----------------------------AGGCGTGATGAATGAGCACAAGA----------------------------ATAACAATGAAATTTCAAAAACCTGAATC--ATGGTTTAAACTGTGTTTTCTTTTATTGAAAAAAAGCTTCAAAAAG----------------------------TGTTCGATCGTTTATTTTTT------------------------------------------------------------------TGTGATA-------------ATCTTCATCT-TCGGCTAATAAAATTCA----AGATATTAAACGTTT----TTCTCG---
s cb4.chrX              10920499 351 + 21540570 gtatttatcaaaaaatgatacggcaaaaaaacaaatgactgACTCACAATTCAGAGCACGAACTATTTTCATGCTTCTTggtttttctaaaaagaaaaggagattttttctttttggattacgaatccaaaatccaaaacagTGTTAAAATTTGGTTTGAGTTTTGGATAAGATTTGAGTCTTGAATAATAAAAAGAGGA-----------------AGGACCTGTGAATAACTCATA--TCTCCAAAGTTTGATCCTATAGGCCAAA----------CATAAGTTCAGAA-----------------------------------------------------ACATTTATTCATGCATT--------------------------TATTTTGAACGATAAA----------------TGAGATA---------TCCAGCCTCCGTTTCTCTGTTACATTAA---------AACCCAAAATCGTC---TTCCTCA---
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2343749 389 -  4500979 ---------------ggatgcatgaaagaagcaaa-------------------------aTCCTTTTTGATGCTT----------------------------------------GATTTCTAATAATAAATCAGGATTGATATCAAA---------------TAGATGGAct---aatcttgaaaaaaaaattgaaaatctgcCAGCTATGCTTTGAGTTCTGGGCTAAACAAATA---CTAAAAAGAGTATGTTTGGGGGGCGAGTCAAAATCTTCGTGAATACAGAAAACTCTTGAAAAGGGTACTCTAAACTTTGGTAGAATGAGTTATGTTCGACCTTACATCTGTTCAAATATTCTGATAAGTTCGTTCCTCATATGGCATATTCCCAATCATGAAAAATTCTTTCACctgttggaaaaaaaacgtgttcTGGTCATAGTTTGTATGTTCCGGTAACGTA----GAATACAAAAGAATT--AATGCTGA---
i caeRem4.Crem_Contig0  C 0 I 30
s caePb3.Scfld02_0       3880475 252 +  4147112 ---------------------------------------------------------------CTTTTTGGGGagc-------------------------aattttcttttctcaggTATCGAA-AGATGatccgaaaaactgaaaaa--------------tcagaacaaac------------aaagaagcacaaaa-----------------------tggaacgaacgcaca---------------------aaaGCTGAGTCAGTGTGTTCCCAActa-----------------------------------------------ttctcgatttttgatttctaaaaacATAAAGA----------------------AAATATGGATTAAGAA-------------Tcctgagaaa-----attttcaaaactgtgttT-TGAGTTATGGAATGATATTCCGGATattaaaaatttcgagttATGATCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=-1055.000000
s ce10.chrX              5619737 21 + 17718866 -----------------TTTTTAATCCTTTTTCAAATC
s cb4.chrX              10920850 38 + 21540570 TAACTTGTCATGTCAAAATTGCAGctggtttttcaatt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3880727 23 +  4147112 ---------------ACCTTACATCTGTTTTAGTATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I
e caeRem4.Crem_Contig0   2344138 30 -  4500979 I

a score=-22891.000000
s ce10.chrX              5619758 127 + 17718866 -----------------TATTTACTATTAAAAGC--ATATGATTATCTTTAA-----A----------------------------------------------AAAATTGCACCTA---ACTTGTTGAATATGGAGTTTAAAATGAGTCTGAATAG------GTTCAA---------TAATTATTATGTTAA----GCACT---AAATGATTTCACACATT--
s cb4.chrX              10920888 167 + 21540570 -------------------ttcaccagGCAATTAGCATGAGTTCTGTCTTGAGTTCTA-------------------------TTTGTTCCAGAAAGATCTGGGCAAATTAACCGAGTACAGTC-----AAaaacaattaagaaaaatctgagaatgcTAATTGTTCGACTGAAAGGGTCGTTTTCAGCTTACCTGGGTTCA---AAATAAGCttc---att--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2344168 158 -  4500979 TATTTATTACTCTAAGCTTTTGACTAAGGAAGTG--ATAACATCATTTTCAGGTTCTA-------------------------------CGAGAAAATTC----CAACTTCTACGAA---AATT-----ATATGCAATTTTGAGTGCATTCGATATGGCCATGATTCGA---------TAATTGTTAGTTAGC----GTTCt---atattatttta---aat--
i caeRem4.Crem_Contig0  I 30 I 28
s caePb3.Scfld02_0       3880750 201 +  4147112 -----TGTAAACTAGACTCCTTCCTTATAAATCA-TATGCCATCACTCTAACTTTACACCTGTGTCTGTTCCGGGAGAAGGAGTTTGTTCCACGCGGTTC--GTGAAATGATTCTGA---ACTT-----ATGTGTCATTTGAATAGGTT----AGTTCTTGTTATTTGTCATAAGGCGTGAAAATCAACATTTCGaagttctctgaaaatttttta---acttc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=-2302.000000
s ce10.chrX              5619885 44 + 17718866 -CTAAGA-------------ATGGTGAAATTGGTTGCAAT----TATTA----------TTTTCGTGATTTT
s cb4.chrX              10921055 65 + 21540570 ctcaaaattccttttttcttatgGAGCATTCAATAATTAT----TTTGA---CTTTCGAATTCTATGAATCC
i cb4.chrX              C 0 I 1
s caePb3.Scfld02_0       3880951 71 +  4147112 -cTAAGATTCTGTTCGAAATAGACATGATATGATAATAACTAGATGTGAAAGCATATAATTTCCAAGATTCT
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I
e caeRem4.Crem_Contig0   2344326 28 -  4500979 I

a score=-215.000000
s ce10.chrX              5619929 14 + 17718866 GATACATCATT----------TTC---
s cb4.chrX              10921121 27 + 21540570 GTCACATCATTGGTCGTGGGACCCTAA
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2344354 17 -  4500979 AATACATCACT----------TCCTTC
i caeRem4.Crem_Contig0  I 28 C 0
s caePb3.Scfld02_0       3881034 14 +  4147112 AATACATCATG----------TCA---
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I
e caeSp111.Scaffold626    189262 700 -  1189296 I

a score=13633.000000
s ce10.chrX              5619943 54 + 17718866 GCTATTTTCGATTTTTGAACATT---------ACAACAAATGTTCTGTTTATTTTTGAG-------------CAAA
s cb4.chrX              10921148 72 + 21540570 TTGGTTTCTGGCTTTTGAATatcgggaaataaaaaacaagcgttctgtttatttatttttcagt----cgTAAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2344371 53 -  4500979 AAGATTTCTGACTTCTTAACCTC---------AAAACAAGTGTTCTGTTTATATTCGTT--------------AAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    189962 67 -  1189296 GCGGTTTTTGACTTCTCAGCCAC---------AAAACAAACGTTCTGTTTATTCTTCATACAAatccttttcaaaa
i caeSp111.Scaffold626  I 700 C 0
s caePb3.Scfld02_0       3881048 59 +  4147112 ATGGTTTCTGACTTCTTAACCAT---------ATTACAAGTGTTCTGTTTATTCTTCCAGCCAA--------GAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   790071 2016 +   823664 I

a score=89542.000000
s ce10.chrX              5619997 100 + 17718866 TCATAAC-ATTCCTAATCGAGTGAGT------AAAAGAATGAGT----TTATGTTTTTGTGCACTCAACTGTAAATAAATGAGTTGGATTTTAAGAGAATGGAAGATTAGT
s cb4.chrX              10921220  95 + 21540570 TCACAAC-AATTCTAATTGAGTGCGT------AAAAGAATAAGC----TTTTGTTTTCGTGCACTCAACTGTAAATAAATGAGTTGGATT-----ATTGTGGAAGATtagg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2344424  94 -  4500979 TCATAAC--ATTCTAATTGAGTGCGT------AAAAGAATAAGC----TTTTGTTTTCGTGCACTCAACTGTAAATAAATGAGTTGGATT-----ATTGTGgaagattaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    190029  99 -  1189296 tcataaC-ATCTCTAATTGAGTGagt-----caaaaaaataagttttgttttgtttttgtgcACTCAACTGTAAATAAATGAG-TGGATT-----ATTGAAGAAGATTAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3881107  95 +  4147112 TCATAACAATTCCTAATTGAGTGCGT-------AAAAAATaagc----ttttgtttttgtgcaCTCAACTGTAAATAAATGAGTTGGATT-----ATTGTggaagattaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   792087 100 +   823664 TCATAAC--ATTTTAATTCAGCGAGTAGGAGTAAGAGAGTAAGC----TTCTGTTTTTGTGCACCCAACTGTAAATAAATGAGTTGGATT-----ATTGAGGGAGATTAGT
i caeJap4.Scaffold18194 I 2016 I 302

a score=646.000000
s ce10.chrX              5620097 3 + 17718866 AAA
s cb4.chrX              10921315 3 + 21540570 aaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2344518 3 -  4500979 aaa
i caeRem4.Crem_Contig0  C 0 I 121
s caeSp111.Scaffold626    190128 2 -  1189296 AA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3881202 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792187 302 +   823664 I

a score=-31.000000
s ce10.chrX              5620100 6 + 17718866 CGGTGG
s cb4.chrX              10921318 6 + 21540570 agaagg
i cb4.chrX              C 0 I 319
s caeSp111.Scaffold626    190130 2 -  1189296 ----AG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3881205 6 +  4147112 aaagag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792187 302 +   823664 I
e caeRem4.Crem_Contig0   2344521 121 -  4500979 I

a score=-362.000000
s ce10.chrX              5620106 67 + 17718866 TTTTTTTCTGTC----GTTTTTCTTTGCTTAGTCAAAAATTGCATTTTCTCTGAAAACAAAGCGATTCCAG----------------
s caeSp111.Scaffold626    190132 65 -  1189296 AGTTTTGCTGCC----AAAAATCTTCGG-----------------CTCCTC-GAAAACAAATACGTTCCACAGCCCGCCGATTCTAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3881211 59 +  4147112 aagttttCTGCCTGCAGAAAATCCTTGG------------TGttccttctcaaaaaacaaatacatCTCAG----------------
i caePb3.Scfld02_0      C 0 I 36
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeRem4.Crem_Contig0   2344521 121 -  4500979 I

a score=160.000000
s ce10.chrX              5620173 3 + 17718866 ACA
s caeSp111.Scaffold626    190197 3 -  1189296 GCA
i caeSp111.Scaffold626  C 0 I 26
e caePb3.Scfld02_0       3881270 36 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeRem4.Crem_Contig0   2344521 121 -  4500979 I

a score=0.000000
s ce10.chrX              5620176 26 + 17718866 TAAGTAAGACATAAGAGTATGACAGA
e caePb3.Scfld02_0       3881270 36 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeSp111.Scaffold626    190200 26 -  1189296 I
e caeRem4.Crem_Contig0   2344521 121 -  4500979 I

a score=664.000000
s ce10.chrX              5620202 7 + 17718866 TAAGGGT
s caeSp111.Scaffold626    190226 7 -  1189296 TAAGGGT
i caeSp111.Scaffold626  I 26 C 0
e caePb3.Scfld02_0       3881270 36 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeRem4.Crem_Contig0   2344521 121 -  4500979 I

a score=5.000000
s ce10.chrX              5620209 2 + 17718866 AT
s caeRem4.Crem_Contig0   2344642 2 -  4500979 AA
i caeRem4.Crem_Contig0  I 121 C 0
s caeSp111.Scaffold626    190233 2 -  1189296 Ag
i caeSp111.Scaffold626  C 0 I 10
e caePb3.Scfld02_0       3881270 36 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I

a score=10564.000000
s ce10.chrX              5620211 36 + 17718866 GACAGATTAAACTAGTGAATAATGATGTTCTC------AATT
s caeRem4.Crem_Contig0   2344644 36 -  4500979 GACAGATTACACGTATGAATAATGATGTCCTC------AGTC
i caeRem4.Crem_Contig0  C 0 I 268
s caeSp111.Scaffold626    190245 42 -  1189296 aaaagattaaacTGATGAATAATAGTgttctcttttgaaatg
i caeSp111.Scaffold626  I 10 C 0
s caePb3.Scfld02_0       3881306 41 +  4147112 AAGAGATTAAACTCATGAATAATGGTGTCCTC-TGTACAATC
i caePb3.Scfld02_0      I 36 C 0
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I

a score=1298.000000
s ce10.chrX              5620247 22 + 17718866 AGAAAAATATATAAAAATCGTG
s caeSp111.Scaffold626    190287 21 -  1189296 acGAATGGATAAAAAGTTC-TG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3881347 22 +  4147112 ACAAAAGGATGAAAGTCTCGTG
i caePb3.Scfld02_0      C 0 I 707
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeRem4.Crem_Contig0   2344680 268 -  4500979 I

a score=-4986.000000
s ce10.chrX              5620269 258 + 17718866 TGAGATTCATGACGGTTTTCTTGTTGTTTTTGGGATTACGTGTTTCCCAAATTATAGCATACTAGCAGTTATTAAAAGTCTGCAATATGATCTCCGGCTAATTTTAAATTTCATAGCGAGGTTTTACAGAAATCGGTGTAGGGGCAGAAAAAAATTGCCGGATTTGCTGGCAATTTTTGATTGCGGCTTACCAATTCCCACTTACACCCAAATTCGCGGTGCTAAAGTGCTACATACATAGCTATGAGGTGTGATTTC
s caeSp111.Scaffold626    190308  81 -  1189296 TGACGTCAGGaaacttcttcctcttcttccag-----------ttccctagtt------------------------------------------------tttttgacttc------------------------------------------------------------------GATTATGAATTATAAAT-----------------------------------------Cataatcaaga-----------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I
e caeRem4.Crem_Contig0   2344680 268 -  4500979 I

a score=-752.000000
s ce10.chrX              5620527  87 + 17718866 AGATTATACataat--a----aaaataaaaaatttaCAGA-ATATTAAAACTAGT------CAAATATAAATTTCAAAGAATATTCC-GGTTTAAAAACAA----------
s caeRem4.Crem_Contig0   2344948 104 -  4500979 ACATTATGAATAATGAATCGTAATCTAGAAAATTGcaaagaatttttaaaattatgtg---TGAGAAGAGATTC--AACAATGTTCCGGGTGCAAAGACTCCCGTTGTC--
i caeRem4.Crem_Contig0  I 268 I 1
s caeSp111.Scaffold626    190389  93 -  1189296 aaattgcgaagaat--attg-aattt-----gttgaaaaa-------aaacttgtgtGGCACGAAGAGAAATAT--AGCAATCTTCCGGGTGCAAAGAC-CTCATTGTCTA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921324 319 + 21540570 I

a score=21480.000000
s ce10.chrX              5620614 91 + 17718866 TTTCAACCTTTTTCGTGAGATCGGCTTAAAAATCTAAAGGTTCAAAAATGCAATGCACTTCTCGATTCTAACGAATGATTTC------AAAAAGAAG
s cb4.chrX              10921643 91 + 21540570 TTTTGACC-TTTGCGTGACATCAAACAGAAAATCTAAGAAGTCAAGAATGA-----CCTTGTTGATTCTGGGGAATGATTtcgtaaaaaaaaagaag
i cb4.chrX              I 319 I 26
s caeRem4.Crem_Contig0   2345053 84 -  4500979 TTTTGACC-TTTACGTGACATCGATTGGAAAATCTAAGAAGTCAAAAATGG-----CTTTGTTGATT-TCAAGAATGATTCC------AAGACGGAG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    190482 86 -  1189296 -TTTGACC-TTTGCGTGACATCGGATGTAAAATctaaaaagtcaaaaaaga---gCTCTTGTTGATTCCGAAGAATGATTTC------TAGAATACA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I

a score=-1370.000000
s ce10.chrX              5620705 18 + 17718866 -------ACGTTAAAAGTGTGGTTG
s caeRem4.Crem_Contig0   2345137 10 -  4500979 -------aaggacaaaa--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    190568 17 -  1189296 ACGCCGGAcggagcaaa--------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792187 302 +   823664 I
e cb4.chrX              10921734 26 + 21540570 I

a score=91.000000
s ce10.chrX              5620723 1 + 17718866 A
s caeJap4.Scaffold18194   792489 1 +   823664 a
i caeJap4.Scaffold18194 I 302 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e cb4.chrX              10921734 26 + 21540570 I
e caeSp111.Scaffold626    190585 0 -  1189296 C
e caeRem4.Crem_Contig0   2345147 0 -  4500979 C

a score=35491.000000
s ce10.chrX              5620724 52 + 17718866 AAGAAAAATGCATGCG----------TCAATTCGAACGCTATGCATACAATGAGCAGGTCAC
s cb4.chrX              10921760 52 + 21540570 aagaaaaatgcaTGAG----------CCAATTTGAACGCCATGCATACAATAATCAGGTCGC
i cb4.chrX              I 26 I 1500
s caeRem4.Crem_Contig0   2345147 52 -  4500979 aagaaaaatgcatgAG----------TCAATTCGAACGCAATGCATACAATGAGCAGGTCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    190585 52 -  1189296 aagaaaaatgcatGAG----------CCAATTTGAACGCTATGCATACAATGAGCAGGTCAA
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18194   792490 62 +   823664 agcaaaaatgcATCAAGCTGTTCTCTCCACTTTGAACGTTATGCATACAATGAGCGGGTCAC
i caeJap4.Scaffold18194 C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I

a score=-1275.000000
s ce10.chrX              5620776 3 + 17718866 -GGT
s caeRem4.Crem_Contig0   2345199 3 -  4500979 -ACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18194   792552 3 +   823664 TGT-
i caeJap4.Scaffold18194 C 0 I 5934
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e cb4.chrX              10921812 1500 + 21540570 I
e caeSp111.Scaffold626    190637 0 -  1189296 C

a score=-19095.000000
s ce10.chrX              5620779 586 + 17718866  
s caeRem4.Crem_Contig0   2345202 350 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    190637 296 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10921812 1500 + 21540570 I

a score=21182.000000
s ce10.chrX              5621365 139 + 17718866 TAGTTTTCTGGTCCG-TCCGAGCATC----------TTTGCCG---CCCACTTGAGAATCCTAGAGACTACT--------GGACATGGGCTAGTAGCTTTCCATACTTGA---CGGCTATTCGTAGAGA----AAAGTCATTTGACAG-------GGTGATGAAAAGAAATGTGG
s cb4.chrX              10923312 161 + 21540570 TAgttttttggtccgttttgaGTATCGCCATGTCGTTTAGCCA---CCCACTTGAGAATCAGAGTTACTCCTCTTGCTTCGATTTCTGGGTA-TGACTATCAATACTTGAAGGAGGCTATACACGtctatttcaa---------atattcctgG-GGTGTTGAAAATAGAAGCAG
i cb4.chrX              I 1500 I 9
s caeRem4.Crem_Contig0   2345552 159 -  4500979 TAGTTTTTTGGTCCGTTTTGAGTAT--CTGGCTTCTTTAGCCA---CCCACTTGAGAATCAGGAAAACTGCT--------GGACACGGGTTAGTAGCTATCAATACTTGA---AGTCTTTTCAAAGCTATTTCAATGTTATTTGACATGAATGGCAATGATGAAAATAGAACGAG
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    190933 146 -  1189296 tagttttttggttCGTTTTGAGTATC-CTGGCTTCTTCAGTCGTGTCCCACTTGAGAATCAGATATACTACT------------GCTGGACA--GGCTATCAATACTTGA---AGTTTCT---CAGCTATTTCAATATTATTTGACAAG------AGAGttgaaaatagaagg--
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=-65.000000
s ce10.chrX              5621504  9 + 17718866 ----GATGCGGCG
s caeRem4.Crem_Contig0   2345712  9 -  4500979 ----GGCAGGATG
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    191079 13 -  1189296 aaCCCTCAGGGCG
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       3881369 707 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10923473  9 + 21540570 I

a score=1377.000000
s ce10.chrX              5621513 14 + 17718866 AAAATCTTGAAAT---T-
s caeRem4.Crem_Contig0   2345721 14 -  4500979 -AAATCTTAGATA---TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    191093 15 -  1189296 GGAATCTTGAAAA---TC
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3882076 18 +  4147112 aaaattttgaaaggattt
i caePb3.Scfld02_0      I 707 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10923473  9 + 21540570 I

a score=95383.000000
s ce10.chrX              5621527 348 + 17718866 TTGCACTC------------TTCA-GCAG--CTAATCGACATACGAACGTCGAT-----ATGCCACTCAA--CCGACGAACTTTGGACAGATAAAATGGATAAAC---------AAAATGGTGGCAGGGAAAGTAAAATGAAAAACGAACTCGAGAGA-----------------GGAAGGAAGCGAAAAACGAAAAAATTTCAGG-CC--ACATAAGAGAC----ACACATTCTGAGTAGGAGGACAGATAGATGGAC-GGATGAAGCG---ATATATTTCGGAAAA----GCAAAGTGAA-------AAGGAAACTTGAAACTCGAATATGGTGGCATCACTG-GAATCCTGCTAAGTCTC-C-AGATTTTCGTCCAAAACTAAGCTGGAGGATTTGTC---------ATAATTTATATAGTTTCCCA
s cb4.chrX              10923482 361 + 21540570 GCACTCTT------------TTCTTGCAGGTTTAATTGAGTTTCGAACGTTGAAATGGCGTGTCACTCAAACTCGACGAACTTTGGGCAGAT-AAATGGATAAAC---------AAAACGGtgacaga------aaaataa-------aatgaagaGATAG-AGAGGGGTGCAAGGAATGAggcaaaaaaccg---aaatttcagG-CTCCGGATAGATGACATTTTATTTTCCTGACTAGGAGGACAGATAGACAGAC-GGAATGGGTGGATAGATATTTTGGAGCAAAGTGAAAAGAGGAAGGGAA-GA-GAAACTTGAAACTAGAA---GATGGCATCATTC-GCATTCGCGCAAATCTCTC-ggattcattttc--agctaagc----GGATTCTCT----------GGGTTCCAAAGATT-----
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2345735 343 -  4500979 TTGCCCTC------------TCCTTGCGG--TTAATCGATTTTCGAACGTCGAA-----TTGTCACTCAA--CTGACGAACTTTGGACAGAT-AAATGGATAAAC---------AAAA-AGTGGCAGG------AAGATGA-------ATTGGAGAGAAAACCAAACTATGGTTAGAGAGAgacgaaaaaacg---aaatttcagG-CT--GGATACGAGAC-----ATTTTTCCGAGTGGGAGGACAGATAGACAGAT-GGATGAAGCG---ATATATTTTGGAGCA----GCACagtgaaagaaaa-gaggaaacttGAAACTTGAA---GATGGCATCATTT-GAATTTAGTCAAATC---C-GGATTCACTTTC--AGATAAGC----GGATTTCAT--------AAGGTTTTATACGATCTCCGG
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    191108 338 -  1189296 TTGCACTT------AA------CATGCGG--TTAATCGACTTGAGAACGTCAGG-----ATGTCAATCAA--CTGACGAACTTCGGACGGAT-AAATAGATAAAC---------AAAT-GGtgacaga------aaaataagaa--aaacttcagag------------------ggtgaaaaaaagagaacg---aaaTTTCAGTCCC--GGATACGAG-----------TTGTGAGTGGGAGGACAGATAGACAGACAGAATGAAGCG---ATATATTTTGGAGGA----GCAAtgtgaaagaaaa-taagaaacttGAAACTTGAA---GATGGCATCATTC-AAATGCAGTTAATTC---CGGGATAGTCTTTC--ACCTAAGCC-TAAGATCCTACCCTCCCAACAGATTTTATACGATCTCTGA
i caeSp111.Scaffold626  C 0 I 36
s caePb3.Scfld02_0       3882094 376 +  4147112 ttgcatttcttcacaattttttcatgcGG--TTAATCGACTTTCGAACGTCGAA-----ATGTCACTCAA--CTTACGAACTTTGGACGGAT-AAATGGATAAATGGATAAACAAAAT-Cgtgacaga------aaaatgaaaa--gcagTTGGGAAACTCGGACACATTCTTTTGGAGAgtagagaaaaacg---aaatttcagG-CC--GGATACGAGAC----TTTTTTCCTGAGTGGGAGGACAGATAGACAGGC-GGATG----G---ATATATTTTGGAGCA----GCAAAGtgaatgaaaaggaagaaacttGAAACTCGAA---GATGGCATCATCCTAATTTTTGTTAAATC---CGGGATAGCCTTAC--AGCTAAGC----GGATTCCAATCT-GGACGAGGTTTTATACGATCTTCGA
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=-510.000000
s ce10.chrX              5621875 38 + 17718866 CTGCCAAGTAGTTCATTGATCAGTTTTTATGGGGCTCA-------
s cb4.chrX              10923843 33 + 21540570 CAGACTGTTAGTTCAGTGAGCAA-------AGAATAAAAA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2346080 33 -  4500979 CAGACTGTGAG-GCAACGAGCAG------TAGAGTACATA-----
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3882471 39 +  4147112 CAGACTGTTAGTTCAATGAACAC------AATAGTTCAATGGAGC
i caePb3.Scfld02_0      I 1 I 8
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    191446 36 -  1189296 I

a score=29085.000000
s ce10.chrX              5621913 175 + 17718866 --------GTGGAACTAGTGATACATTTTTCAATGCTAACCTTGATTGAACA-----ATTGCAA-----------------GAACAA--TTTCTGATGTTCGTTA----CAAAATGAAATGACATGGGTTCAGTGCCTAGGTTCC------ACTACAAGAAAAGCGC--CAAAAACATACAATTTCTCATGTATGGAATATCAAAAATGAATGCTTTTT-
s cb4.chrX              10923876 194 + 21540570 AGCCGGGTTCAAACCTTGTGATCATTGTCTGAATACTTTCCTTGATTGAATACTTAGGTTAACAAGTCATACGTTGTC-TGGAACGT-TTTCAAGATgttca--aaaaaggagaaaatatGACA---------CGAGTTGGTTCC------AC--TCGATGA----TGgaaaaaacattcaatttttcatgtatgagagatcaaaaatgtatgtttTTT-
i cb4.chrX              C 0 I 575
s caeRem4.Crem_Contig0   2346113 176 -  4500979 A-------TGAAACGTT-TGATTCATTTCTGAATacgtt-tttgattgaata-----gTGAACAAGACATCCGTAATAGTAGAACAC-TTGTAAGAT------------CGACAAAGTATGACAT--GTTCACCAAGTTGGTTCC------AC--TCGGGAA----c--caaaaacattcaatttttcatgtatgaagaatcaaaaatgtatgtttttt-
i caeRem4.Crem_Contig0  C 0 I 624
s caeSp111.Scaffold626    191482 171 -  1189296 -----------------GTATGACTAGTGtgaatagttt------ttgattg--tGAATAGACG---TATTCTTAGTAGTGGAACAC-TTTTctaatattca--a----aagaaaaatatgacaT--GTTCATAAAGTTGGTTCC------ACCGTCGCCTA----C--cgaaaacattcaatttttcatgtatggagaatcaaaaatgtatgttttttc
i caeSp111.Scaffold626  I 36 C 0
s caePb3.Scfld02_0       3882518 186 +  4147112 -----------------ATATGTTGCGTGTGAATAGCTTTCTTGATTGAATG--CTGATTAACAAGTCATGATTGGTAGGCGAACACtttttttAAtattca--a----tagaaaaagatGACAT--GATCAGAAAGTTGGTTCCACTACTACCGTTGGTAA----c--cgaaaacattcaatttttcatgtatgaggtatcaaaaatgtatg-ttttta
i caePb3.Scfld02_0      I 8 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=1909.000000
s ce10.chrX              5622088 10 + 17718866 TGACGCACTC
s caeSp111.Scaffold626    191653 10 -  1189296 tgatggATTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3882704 10 +  4147112 tGACGGATTC
i caePb3.Scfld02_0      C 0 I 1737
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10924070 575 + 21540570 I
e caeRem4.Crem_Contig0   2346289 624 -  4500979 I

a score=70.000000
s ce10.chrX              5622098 176 + 17718866 GGGGCAATTATCGAGA--CCGATTTCACAAGAAGTTTTGCGAACGTAAACAATGAAAACATTGTTCGGTCTGAGAACTGAAATCCTGAAATATGACGAACATTCCCTCCTTCTAGACAGGT---GCTAATGCCGTCGAAGCTGATATTTCCGGAAAAGGTTGTAATGTCCTTTCTGAGTGA
s caeSp111.Scaffold626    191663 153 -  1189296 CAAA-GATTATCTATAAGACGAATCAAAAAGTAGGCTGGTGAGAG------ATCGAAACAT------------AAATTGAG----TAAGATA-GAGgaagtattttttcttttcgaaagatcAAGAAGAGACCTTcgaattcaatattttcaaaatggaatgaaat----tttatgaatGA
i caeSp111.Scaffold626  C 0 I 323
e caePb3.Scfld02_0       3882714 1737 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10924070 575 + 21540570 I
e caeRem4.Crem_Contig0   2346289 624 -  4500979 I

a score=0.000000
s ce10.chrX              5622274 1171 + 17718866  
e caePb3.Scfld02_0       3882714 1737 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10924070  575 + 21540570 I
e caeSp111.Scaffold626    191816  323 -  1189296 I
e caeRem4.Crem_Contig0   2346289  624 -  4500979 I

a score=564.000000
s ce10.chrX              5623445 6 + 17718866 TGACTT
s caePb3.Scfld02_0       3884451 6 +  4147112 tgactt
i caePb3.Scfld02_0      I 1737 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10924070 575 + 21540570 I
e caeSp111.Scaffold626    191816 323 -  1189296 I
e caeRem4.Crem_Contig0   2346289 624 -  4500979 I

a score=-2270.000000
s ce10.chrX              5623451 47 + 17718866 AACTAAAAAACAAAAACAAAATAAGCTGGCGGTTCTCAAACCTCCTC-----------------------------------
s caeRem4.Crem_Contig0   2346913 54 -  4500979 aatcagtgaataaaaacaaaaaattccattgGATTCTAA----CCTTGA------------------CACTTTGAC------
i caeRem4.Crem_Contig0  I 624 I 13
s caePb3.Scfld02_0       3884457 71 +  4147112 -------gaaaaaaaaacaaaaaaaaatttggatcttCA----TCTTGAGATAGAGAGACTGACTGGCAGTTGAACATTCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10924070 575 + 21540570 I
e caeSp111.Scaffold626    191816 323 -  1189296 I

a score=-736.000000
s ce10.chrX              5623498 10 + 17718866 -AAACCTGCAG
s cb4.chrX              10924645 10 + 21540570 AAACCCCAAG-
i cb4.chrX              I 575 C 0
s caeRem4.Crem_Contig0   2346980 10 -  4500979 gaaaaccaaa-
i caeRem4.Crem_Contig0  I 13 C 0
s caePb3.Scfld02_0       3884528  9 +  4147112 -CAACCGGAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    191816 323 -  1189296 I

a score=80727.000000
s ce10.chrX              5623508 432 + 17718866  
s cb4.chrX              10924655 488 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2346990 457 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    192139 456 -  1189296  
i caeSp111.Scaffold626  I 323 I 25
s caePb3.Scfld02_0       3884537 468 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=-4355.000000
s ce10.chrX              5623940 32 + 17718866 TGTTGTTTGTTTTTTCACAGCTCTA------AAGAGTT
s cb4.chrX              10925143  7 + 21540570 -------------------------------AAtctgg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2347447 31 -  4500979 ----ACTTGACTTTTC--AGTTCCATTTCT-AATATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3885005 37 +  4147112 -GAACTTTAACTTCTtaaaatgcaatttttaaagattt
i caePb3.Scfld02_0      C 0 I 55
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    192595 25 -  1189296 I

a score=-3082.000000
s ce10.chrX              5623972 55 + 17718866 CATAGCTTTATAGAAA--CCTCAGAAGTTGTTTT--TGTAAACTGTGA--GCATTTCTTGA
s cb4.chrX              10925150 49 + 21540570 gaaaatgaaaaaaacacgtataatttgaaatttc----ctaactaaga--------tctga
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2347478 60 -  4500979 AACAATTATCTAGACA-GTTTTACAAGACATTTCGATGAGACGTAAGACTGGAGAGTTTGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3885042 55 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    192595 25 -  1189296 I

a score=-13823.000000
s ce10.chrX              5624027 124 + 17718866 AACTGGAAAAAGATAAGTGGAAACGTGAATATTTTCTACCAGACAACCTTATCTACAATTCTGGGCACACTCAAAAATATTTTCTAAAAACAAGACTGATTACTACATACAAACTACTTTAAAA
s cb4.chrX              10925199  58 + 21540570 ----aaaaaatgacaaatgtTGATACTGGG------------------------ATAACTGGGGCTTGGAAAAACA--AGTGAATAAG------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2347538  57 -  4500979 ----AAAGGAAGTTAGgttttta---------------------------------aattcaaagtGGTATTGACAGTAATCAATGAAA--------------------------ACTTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3885097  65 +  4147112 atcagaaaaaagtgatgtgGAGACATAACG---------------------TATGCCATTCGGCGGAACATAATTGATGTTTAGTA--------------------------------------
i caePb3.Scfld02_0      I 55 I 3
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    192595  25 -  1189296 I

a score=31480.000000
s ce10.chrX              5624151 177 + 17718866 TTGGCAAAATAGTCAGAAT------GTTCGTAAATATTAATTTAACTTTCAAAT-GAGTAATAATTTATGTGA--AAATTATTTTTTTTCTAACGAGAATCACTAGTGCCAACTGGAACAAATAGTTTTGTTTGAACAGCTCTCGAAAACAGAGAACGGAGAACTTTTCTTTGAAAGGAAAATAAA
s cb4.chrX              10925257 155 + 21540570 ---ACAAAA-CAAATTTGA--------CAAGTAATA--------------ATTT-GTCTAAGAGTaatgccaaaaaaattat-ttttcatcg--GGAAA-TACTAGTGGCGACTGGAACAAATAGCTGTGATTGAACAGCTCTTGAGTACAGAGAACATAATTTCTTTGTCTAAAGGGTAGATGGA
i cb4.chrX              C 0 I 1440
s caeRem4.Crem_Contig0   2347595 147 -  4500979 ---ACAAAATCatatgaaa--------ttaaaaatg--------------agtG-GGCTAATAACTCTTC----AAAATTATGTTtccatca--gaaaa-----aattttagcTGGAACAATTGGTTGTGTTTGAACAGCTCTTGAGTACAGAGAACATAGTT--TTTGTTCAAAGGCTAGACATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    192620 149 -  1189296 TCGGCAAAATAGTGGTAGa--------tagaaaatatcaattagACGTCTAGCTAGACTAGTAATTTGtctga-gaaaaagtgatttcatTT--GGAGAATACCGGTGCCAAATGGAGAAAATAGTTGTGTTTGAACAGCTCTCAAGtacagagaaaaga--------------------------
i caeSp111.Scaffold626  I 25 C 0
s caePb3.Scfld02_0       3885165 179 +  4147112 GCGGCatagaaaggaaagaaaatttgtttgaaaacatcaattaaGTATCTAGCT-GACTAATAACTTGTCTGA--AAGTTATGTTTTCATCG--GAAAACTGCTAGTGCCAACTGGAACAAATAGTTATGTTTGAACAGCTCTTGAGTACAGAGAACAGAGTT--TTTGTTTAAAGGCCAGACAGA
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=2758.000000
s ce10.chrX              5624328 21 + 17718866 GTGGTAC--------AAGATGAATTACAA
s caeRem4.Crem_Contig0   2347742 15 -  4500979 ---GTGT-----------ATGGATTACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    192769 27 -  1189296 --ggggTAGACAATATAGATGGATTACGA
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3885344 29 +  4147112 ATGGTGTAGAAGGGAGGGATGGATTACGA
i caePb3.Scfld02_0      C 0 I 656
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10925412 1440 + 21540570 I

a score=2141.000000
s ce10.chrX              5624349 11 + 17718866 AATCAAACAAA
s caeRem4.Crem_Contig0   2347757 11 -  4500979 AATCAAACACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    192802 11 -  1189296 AATTGAACAAA
i caeSp111.Scaffold626  I 6 I 453
e caePb3.Scfld02_0       3885373 656 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10925412 1440 + 21540570 I

a score=282.000000
s ce10.chrX              5624360 19 + 17718866 AAAGTGAACAGAGGATGGT
s caeRem4.Crem_Contig0   2347768 19 -  4500979 CTATAGGAAAGCGGATAGT
i caeRem4.Crem_Contig0  C 0 I 438
e caePb3.Scfld02_0       3885373 656 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10925412 1440 + 21540570 I
e caeSp111.Scaffold626    192813 453 -  1189296 I

a score=0.000000
s ce10.chrX              5624379 1337 + 17718866  
e caePb3.Scfld02_0       3885373  656 +  4147112 I
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10925412 1440 + 21540570 I
e caeSp111.Scaffold626    192813  453 -  1189296 I
e caeRem4.Crem_Contig0   2347787  438 -  4500979 I

a score=91.000000
s ce10.chrX              5625716 1 + 17718866 T
s caePb3.Scfld02_0       3886029 1 +  4147112 t
i caePb3.Scfld02_0      I 656 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e cb4.chrX              10925412 1440 + 21540570 I
e caeSp111.Scaffold626    192813 453 -  1189296 I
e caeRem4.Crem_Contig0   2347787 438 -  4500979 I

a score=-2051.000000
s ce10.chrX              5625717 63 + 17718866 TCTAAAACACAA---------------GATACAGAAAAAATGGAAGCA-----CCAGAA-TTTGGTGCCCAAAAGAAATATGTA
s cb4.chrX              10926852 62 + 21540570 TTCAAGACACAA---------------CTTTTAGCAATCttagaagaacaaaaaatgaattttgtggcaccagtgaa-------
i cb4.chrX              I 1440 C 0
s caePb3.Scfld02_0       3886030 67 +  4147112 ttcaaaatacAAGACACATACTGATCGATTTCATCGTCCTTGG----------Catgaa-tttgaagaatgagaaaaa------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeSp111.Scaffold626    192813 453 -  1189296 I
e caeRem4.Crem_Contig0   2347787 438 -  4500979 I

a score=880.000000
s ce10.chrX              5625780 20 + 17718866 AGAGAATAAAATGTGCCGAG
s cb4.chrX              10926914 14 + 21540570 -aaaaaagaaaactt-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    193266 18 -  1189296 agaagaaaaaaagtttcg--
i caeSp111.Scaffold626  I 453 C 0
s caePb3.Scfld02_0       3886097 17 +  4147112 -ggaagaaaaaactttcg--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I
e caeRem4.Crem_Contig0   2347787 438 -  4500979 I

a score=402.000000
s ce10.chrX              5625800 4 + 17718866 TTCA
s cb4.chrX              10926928 4 + 21540570 tctA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2348225 4 -  4500979 ttga
i caeRem4.Crem_Contig0  I 438 C 0
s caeSp111.Scaffold626    193284 1 -  1189296 ---a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3886114 1 +  4147112 ---a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   792555 5934 +   823664 I

a score=38319.000000
s ce10.chrX              5625804 32 + 17718866 GTTCATCAGCAGATATTCTTAACCGGAAAGAG
s cb4.chrX              10926932 32 + 21540570 GTTCATCAGAAGATATTCTTCACCGGAAAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2348229 32 -  4500979 gttCATCAAGAGATATTCTTCACCGGAAAGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    193285 32 -  1189296 gtTCATCAGAAGATATTCTTCACCGGAAAGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3886115 32 +  4147112 gTTCATCAGAAGATATTCTTCACCGGAAGGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   798489 32 +   823664 GTTCATCAGAAGACATTCTTCGCCGGAAGAAG
i caeJap4.Scaffold18194 I 5934 I 4004

a score=19716.000000
s ce10.chrX              5625836 51 + 17718866 GATTT-CCCAAGACTTTGGC-------------CGTCTCATGATCAGAACATACACTTTCTGCAA
s cb4.chrX              10926964 63 + 21540570 GATTTGTCCAAGACGTCGACGTTGTCAAAGAGCACGATCatgaacacatt--tttctctttgcAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2348261 62 -  4500979 GATTT-TCCAAGACGTCGACAACGACAAAGCTGCCGATCATGATTAGAAC--ACACTTTTTGCAA
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    193317 54 -  1189296 GATTT-TCCACGATGTCGAC--------AGCTCAATATGATGATTAGAAC--ACACTTTGTGCAA
i caeSp111.Scaffold626  C 0 I 27
s caePb3.Scfld02_0       3886147 62 +  4147112 GATTT-TCCAAGACGTCGACAACGTCAAAGCCCAGTTTCATGATTAGCAC--ATACTTTTTGCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I

a score=-3650.000000
s ce10.chrX              5625887 49 + 17718866 GATTTGAAATAGTTTGGAAAAAAATTCGGTAGATTTTTTGAAACTTTGA
s cb4.chrX              10927027 11 + 21540570 ----------------------------GCAAACTTTTT----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2348325 29 -  4500979 AACTGCGGATAG---------------GGCAAACTccttttcga-----
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3886209 24 +  4147112 -----TGCATAG---------------Gacaagctttttgaaaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e caeSp111.Scaffold626    193371 27 -  1189296 I

a score=104060.000000
s ce10.chrX              5625936 433 + 17718866  
s cb4.chrX              10927038 446 + 21540570  
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   2348354 387 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    193398 432 -  1189296  
i caeSp111.Scaffold626  I 27 C 0
s caePb3.Scfld02_0       3886233 449 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I

a score=-3865.000000
s ce10.chrX              5626369 17 + 17718866 ATGTATCAT--TGAGGTGA
s caeRem4.Crem_Contig0   2348741  9 -  4500979 --TTGACATAC--------
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold626    193830  2 -  1189296 -------AT----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3886682  2 +  4147112 -------AT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927484 20 + 21540570 I

a score=0.000000
s ce10.chrX              5626386 8 + 17718866 CACAATGA
e caePb3.Scfld02_0       3886684 0 +  4147112 C
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927484 20 + 21540570 I
e caeSp111.Scaffold626    193832 0 -  1189296 C
e caeRem4.Crem_Contig0   2348750 33 -  4500979 I

a score=-1461.000000
s ce10.chrX              5626394 13 + 17718866 AAGGAAACTttaa-------
s cb4.chrX              10927504  9 + 21540570 -----------AAGAAAAAG
i cb4.chrX              I 20 I 20
s caePb3.Scfld02_0       3886684  5 +  4147112 --------TTTAA-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e caeSp111.Scaffold626    193832  0 -  1189296 C
e caeRem4.Crem_Contig0   2348750 33 -  4500979 I

a score=0.000000
s ce10.chrX              5626407 28 + 17718866 agttgaagtagaaccagtgggaaattgc
e caePb3.Scfld02_0       3886689  0 +  4147112 C
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927513 20 + 21540570 I
e caeSp111.Scaffold626    193832  0 -  1189296 C
e caeRem4.Crem_Contig0   2348750 33 -  4500979 I

a score=-219.000000
s ce10.chrX              5626435 24 + 17718866 tttaaaacatgcctagagctccac
s caeSp111.Scaffold626    193832  5 -  1189296 -------------------TCCAT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3886689  0 +  4147112 C
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927513 20 + 21540570 I
e caeRem4.Crem_Contig0   2348750 33 -  4500979 I

a score=0.000000
s ce10.chrX              5626459 45 + 17718866 aataacttaatatcatagaaaaattcaaaacattgttctaaattt
e caePb3.Scfld02_0       3886689  0 +  4147112 C
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927513 20 + 21540570 I
e caeSp111.Scaffold626    193837  0 -  1189296 C
e caeRem4.Crem_Contig0   2348750 33 -  4500979 I

a score=65.000000
s ce10.chrX              5626504 40 + 17718866 tgtatgattttttTTCAAATAAGATAAAAACATAactttt
s caeRem4.Crem_Contig0   2348783 27 -  4500979 TGTATCATCCTTCCT-------------GGTTTATCTTCT
i caeRem4.Crem_Contig0  I 33 C 0
e caePb3.Scfld02_0       3886689  0 +  4147112 C
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927513 20 + 21540570 I
e caeSp111.Scaffold626    193837  0 -  1189296 C

a score=-2236.000000
s ce10.chrX              5626544 61 + 17718866 tgactgtcaataaaaattttgcagaaaattatttcaaaagttgtactatgatatttggtca
s caeRem4.Crem_Contig0   2348810 27 -  4500979 TGTCTGTGAGTATAAAATGAGACGAAA----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3886689 10 +  4147112 TGACTGTGAA---------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927513 20 + 21540570 I
e caeSp111.Scaffold626    193837  0 -  1189296 C

a score=67722.000000
s ce10.chrX              5626605 258 + 17718866 ttctgtcattataggagggggtttgaacggttttcacactggcgctactctacctttgaAATAAGTAAATGAT---GCGTTA-GCTTGTTT--CTGGAATTGAGTC-------GCT-----------------------GTCAATAGATG---GAATAA---GGAAGAACACACGAAG---ACCGCTCGGGAGAATAAGTAACCTGATAGCTTTATTTTGAATCTCTCTCCCACC--AAGACACCCTTTTCACTTCAATTAAGACGTTTGGTAG-------CAAAAACAAAAGGATTGGGTACGACGTGTGT
s cb4.chrX              10927533 230 + 21540570 ----------------------------------------------------------------GTGAATAAAA--ATACTATGTTGGTTTTGCTGGAATTCAGTCCA-----ACTCGTTA--------GTTTTAGAGAGACAATACATGTtaaaatagagaagaaga--acacgAAGACCACCACTCGGGAAAATAAGAAACCTGatagttttattttgaatctCGTTTCCATTGCGCGacactattttt-cttcaattaaaacatttggaagaagaagcgaAAAACAAAAGGATTGGGTATGTTGTCTGT
i cb4.chrX              I 20 I 806
s caeRem4.Crem_Contig0   2348837 226 -  4500979 --------------------GTTTGA-------------------------------AAGAGAAACGAATAAAAGGAGACTA-GTTGGTTT--CTGGAATTGTGTCCA--GAGACTCACCACCCATCCCGTT-------GACAACACATG---AAATAG---GAAAGA--ACACGAAG---ACCACTCGGGGAATAAAGTAACCtgatagttttattttcaatc----ttcTGCGCCGCGACAcccatttt-cttcaattaaGACGTTTGGAAG-------GAAAAACAAGAGGATTGGGTACGTTGTCTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    193837 231 -  1189296 TTCTatcattaaaaaagagaaactga-------------------------------gAGAGAAGGGAATGAA---ATGCTA-gttggttt--ttggaattgagtCCATAAAGACTGGCGG------------------GACAGCCAATA---AAGTAA---GGAAGA--ACACGAAG---ACCACTCGGAGAA-TAAGTAATCTGatagttttattttgaatc----tcCCGTTG-CCGACACCC--TTC-CTTCAATTAAGACGTTTGG--GAGG----CGAAAACAAAAGGATTGGGTACGTTGTCTAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3886699 215 +  4147112 -----------ACAAGGAGAAGTTT--------------------------------GAGAGAAATGGAGGGA------CTA-GTTGGTTT--CTGGAATTGGGTCC---AGTACT-TCCC------------------GACAACACATG---AAATAA---GGAAGA--ACACGAAG---ACCACTCGGGGAA-AAAGTAACCTGagagttttattttgaatc----tcTCGTC--TCAACacccttttt-cttcaattaaGACGTATGGAAGAAG----CGAAAACAAAAGGATTGGGTACGTTGTCTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I

a score=3694.000000
s ce10.chrX              5626863 13 + 17718866 GGCAGATTTTCCC
s caeRem4.Crem_Contig0   2349063 13 -  4500979 GGCtgattttttc
i caeRem4.Crem_Contig0  C 0 I 190
s caeSp111.Scaffold626    194068 13 -  1189296 GGTaagattttct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3886914 13 +  4147112 GGTagatttttcc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I

a score=172.000000
s ce10.chrX              5626876 2 + 17718866 GG
s caeSp111.Scaffold626    194081 2 -  1189296 gg
i caeSp111.Scaffold626  C 0 I 270
s caePb3.Scfld02_0       3886927 2 +  4147112 tg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I
e caeRem4.Crem_Contig0   2349076 190 -  4500979 I

a score=1017.000000
s ce10.chrX              5626878 79 + 17718866 TTTGTAATGATTG-TAACAAATAACGACATTCTCCCTGCAGGAGAAT------AATGTTGTCACATTCAAAGTTAATGTAAATACT
s caePb3.Scfld02_0       3886929 72 +  4147112 ---gaaatgaatgaaaacaagCTATGa-----------aaggaaaatggaacaaGAATTGTCacgtttgaaaatattataaaTGCT
i caePb3.Scfld02_0      C 0 I 526
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I
e caeSp111.Scaffold626    194083 270 -  1189296 I
e caeRem4.Crem_Contig0   2349076 190 -  4500979 I

a score=0.000000
s ce10.chrX              5626957 1373 + 17718866  
e caePb3.Scfld02_0       3887001  526 +  4147112 I
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763  806 + 21540570 I
e caeSp111.Scaffold626    194083  270 -  1189296 I
e caeRem4.Crem_Contig0   2349076  190 -  4500979 I

a score=91.000000
s ce10.chrX              5628330 1 + 17718866 T
s caeRem4.Crem_Contig0   2349266 1 -  4500979 T
i caeRem4.Crem_Contig0  I 190 C 0
e caePb3.Scfld02_0       3887001 526 +  4147112 I
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I
e caeSp111.Scaffold626    194083 270 -  1189296 I

a score=273.000000
s ce10.chrX              5628331 1 + 17718866 A
s caeRem4.Crem_Contig0   2349267 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    194353 1 -  1189296 A
i caeSp111.Scaffold626  I 270 C 0
e caePb3.Scfld02_0       3887001 526 +  4147112 I
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I

a score=2576.000000
s ce10.chrX              5628332 108 + 17718866 ----TTTTCTGCTCTACAT-------------TCAAC---AGCTTTGGTTTTAATTGTAACAAAAATTTGCATCACAAT-----CTCATGAAATC-TGTTTGGGCAACCCGTCAGACTGTGTAGCATACAGATC------
s caeRem4.Crem_Contig0   2349268 125 -  4500979 TTTTCTTCCCCTTTAATTTAACAAAACATATATTTCCTttacttaaaattttcat--caatta----taTCATTATGATTTCCGCTGATGAAATA-TCTTCCCATCACTCGTCACGTCGGTTTATACGGTGA--------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626    194354 102 -  1189296 ----CTTTTCGCTTAATCT-------------TCTCC---TACTATAGTCTTTAT--TATTAA-------TATTATGATAACCGCTGATGAAATC-TTTTCCCACCCCTCGTCACGCC-----ATGCGTGGCCATCA---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3887527 117 +  4147112 ----ttttctggttttctt-------------tctctctatgATATTGTTTTCAT--TAATAA----CCGCAATATGATTTCCGCTGATGAAATCTTTTTCCCATCACTCGTCACGCTGGTCGACGCGTAGTTAAGAGAT
i caePb3.Scfld02_0      I 526 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I
e cb4.chrX              10927763 806 + 21540570 I

a score=1774.000000
s ce10.chrX              5628440 6 + 17718866 GAAGGG
s cb4.chrX              10928569 6 + 21540570 GAGAGG
i cb4.chrX              I 806 C 0
s caeRem4.Crem_Contig0   2349396 6 -  4500979 GAGAAA
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    194456 4 -  1189296 --GAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3887644 4 +  4147112 --GAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   798521 4004 +   823664 I

a score=107549.000000
s ce10.chrX              5628446 206 + 17718866 GGGATTCCCC---CGCATTCTCATAGGCATACCGGATCGAGATCTCTTTGACTGA---TAGTGATAAA-GAGG-CAGATTCATGATA--GGGATTTCCCCATACGTCACGTGGCCTCAGAAGGATGTCAACGACACGACA-CAATTGTTTGATTTTTTGTTCC-ATGCCTGTGTTTCGACGACA--GT-CGGTTCCTGTCGAAGACACAAATAT-TTTCTGA
s cb4.chrX              10928575 209 + 21540570 GGGATTCCCC---CTC--TTTGAGAGTCACACCGGATCGAGATCATATTGACTGA---TAGTGATAGGCAAGG-CAGATTTACGGCAGGGGGATTTCCCCATACGTCACGTGGCGTCGATTGAATGTCAACGACAAGAAAGGGATCGTTTGATTTTTAGTTCCAATG-CTATGTTTCGTCGACAAACG-TTGTCGTTGTCGTCGaaaaaaaC-T-GTTCTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2349402 199 -  4500979 GGGGATTCCC---CT---TTTGAGAGACATACTGGATCAAGATCACAGCGACTGA---TAGCGATAGA-GAGG-CAAATTTATGACA--GGGATTTCCCCATACGTCACGTGGCCTCAGTTGAATGTCAACGACAAggaa-----tgtttgatttttcgttCC-CTG-CTTTGTTTCGTCGTCGACAGCCTATCTTTGTCGGGGACACGAA--T-AATCTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    194460 199 -  1189296 GGGGATTCCC---CG---TTTGAGAATCA-ACCGGATCGAGATCATAGTGACTGA---TAATGATAGT-GAGG-CAGATTTATTACA--GGGATTTCCCCATACGTCACGTGGCCTTTGTCGAATGTCAACGACAGAGAAGAAAG-GTTTGA-TTTTCGTTCG-ATG-CTTCGTTTCGTCGACA--CG-ATGTCTGTGTCTAAGACACATAC-T-GTTCTGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3887648 206 +  4147112 GGGGAATCCCCCTCG---TTTGAGACTCGTACCGGATCGAGATCACAACGACTGA---TAGTGATAGT-GAGGCCAGATTTATTACA--GGGATTTCCCCATACGTCACGTGGCGTCAGTTGAATGTCAACGACAAAGAAGGGAGTGTTTGA-TTTTCGTTCC-ATG-CTAGATTTCGTCGACA--GG-ATGTCTCTGTCGATGAAATATAT-TCATTCTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   802525 191 +   823664 -GGGATTCCC---CACA-TATGAATGCCGAATCGGGATTGGATAGATGTGGCTGATAGTAGTGACACT-GCGC-TTAATTTACGACG--GGGATTTCCCCCGACGTCACGTGGCC-----------TCAACGACAAAAGA---agtgtttgattttttgcttg-ATGGGAATGTTTCGTTGACA--GA-CCAAGTGTGTCGACGACAAGA---T-TGTCTGA
i caeJap4.Scaffold18194 I 4004 I 1470

a score=23613.000000
s ce10.chrX              5628652 74 + 17718866 G----AAGAGTCATAAATTGTACCGAACACATGGAAAGGTTCAAAACGC-----TGTTTA------CAACATTTG-TTGATCTTTTGAAC
s cb4.chrX              10928784 90 + 21540570 GAAGAAAAGATTACAAACCGCACCCAACATCTGATTGGGTTCAAAATGCTCTACTGTTGATTTCGGGGGAAACAGTTTGATCTTTTGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2349601 82 -  4500979 G----AAAGGTAATAAACTGTACCAAACATATGAGAGGGTTCAAAAAGCTCTA-TGGTGATTC---GGGGATGGGTTTGATCTTTTGGAC
i caeRem4.Crem_Contig0  C 0 I 664
s caeSp111.Scaffold626    194659 79 -  1189296 G----AAGAGTAATAAACTGTACCGAACATATGAGACGGTTCAAAATGGAT---TGTTTA-CC---TGATAATGGACTGATCTTTTGATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3887854 79 +  4147112 G----AAGGGTTGTAAACTGTACCAAACATATGGCTGGGGTCAAAAAGCTC---CCTCGATCC---TGAT-ATGGtttgatcttttgatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   802716 1470 +   823664 I

a score=-7320.000000
s ce10.chrX              5628726 150 + 17718866 ATTCTTATAGTTTTAGGCTGACAGTTACAAAAACTGGTCAGT--GATGACAA-----CGTCATTATCAAAACTGGATGACAAAGTTCTTTTAGACTTT--------------------TG------------TTATTT---AGTATCTCAGCG---ATCAACAGATCATT-----ACCAATTTT------------ATAAAATGGAAAGACA
s cb4.chrX              10928874 190 + 21540570 ----TGTTGGTTTGGGAAATATGAT------TATTGATCATTTAGATCATAATAGACCATGAT-----AAACTGGTTAAGAAAGTGTGAGTACACTTTGGAAGTCGAAGATAGTTAAGTGATCATGATCtt-ttattttta---gtttcagCGTCAACCGTA--ATTATCAAAAAACCATTTCTGGAAA-TGACTGATAAGATCGAGAAATG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    194738 156 -  1189296 ----------CTGTCCAAAGATGTTTTC---CTTTAATGATT--GGTCACAA-----CGTGACA---AAAACTAGTTGACAAAGTTCCGCTAAACTTT--------------------TGATCCTACACT--TCATGACATAATGTTTCAATG---ATCACA--ATCAT------GCCAGTTATAcagtttcttgaaaaaagtagaaggACA
i caeSp111.Scaffold626  C 0 I 519
s caePb3.Scfld02_0       3887933 133 +  4147112 ----------tctgagaAGAACAGTGCA---TGGTAATCATT--GATCATAA-----CGTGACT---AAAACAAGTT-ATATAGTTCTACTATACTTT--------------------TGATCCCACTTTTGTTAtgtcaaaatgtttcagtg---aTCACA--------------CCA-----------TCATTGGGAAAGTTG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=-1635.000000
s ce10.chrX              5628876 60 + 17718866 GAGTGAATGTAATGATCTACATGTTCTGATAAAAGTTTCTGGAAACGGATGAGAAAAAGG-
s cb4.chrX              10929064 31 + 21540570 GAGGGAGTCTAATGT--------------------TTTGCAGAAACGCATT----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3888066 60 +  4147112 -GGGAATGACAatatcatttcttcttcataaaACACTTCTGGAAACGGAGCGATAAGAAGG
i caePb3.Scfld02_0      C 0 I 1317
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e caeSp111.Scaffold626    194894 519 -  1189296 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=1202.000000
s ce10.chrX              5628936 115 + 17718866 TAAAAGTACTTCAACCTGCAGACAATGCTTTTGATAACGACAAATTATGGTGTAACGAAATTTTGT-----------GATATGGTTCCATCCAAAAAATCGTTTTTTTAAACGCTATCAGTGTGTT
s cb4.chrX              10929095 124 + 21540570 TAAAGATATGATGAAATGTCGGAGAAAGTTTGAATTGCGTCATTTTGTGGGGTAAAAGTATTTTTTCGGCAAAATTCGATATCAATTCA--CAATAAATGGTCAATTTGAATGCTGCgcgtttgtt
i cb4.chrX              C 0 I 347
e caePb3.Scfld02_0       3888126 1317 +  4147112 I
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e caeSp111.Scaffold626    194894 519 -  1189296 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=0.000000
s ce10.chrX              5629051 839 + 17718866  
e caePb3.Scfld02_0       3888126 1317 +  4147112 I
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e cb4.chrX              10929219 347 + 21540570 I
e caeSp111.Scaffold626    194894 519 -  1189296 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=1077.000000
s ce10.chrX              5629890 84 + 17718866 TGCATTT-TTATACATTCAAATTTAATTCAAATACATCACTATTTCTATTTTTAAAGACCATCACTTTTTGGAAGTACTTTTGTT
s caePb3.Scfld02_0       3889443 77 +  4147112 tgcacttattatttattaaacttt---tcaaatttcgaatcatttctatttttatttatcaACAAATCTGG-----ACCCaagtt
i caePb3.Scfld02_0      I 1317 C 0
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e cb4.chrX              10929219 347 + 21540570 I
e caeSp111.Scaffold626    194894 519 -  1189296 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=-287.000000
s ce10.chrX              5629974 18 + 17718866 TTTTTCTTAAATTTCAGC-
s cb4.chrX              10929566 18 + 21540570 tttttcaaaagtcgccAC-
i cb4.chrX              I 347 I 4
s caePb3.Scfld02_0       3889520 18 +  4147112 -ttttaaagaaacGAAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e caeSp111.Scaffold626    194894 519 -  1189296 I
e caeRem4.Crem_Contig0   2349683 664 -  4500979 I

a score=-7.000000
s ce10.chrX              5629992 8 + 17718866 AGGATCAA
s cb4.chrX              10929588 8 + 21540570 TCCGTTAT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2350347 8 -  4500979 aaaatcat
i caeRem4.Crem_Contig0  I 664 C 0
s caePb3.Scfld02_0       3889538 8 +  4147112 aggaacat
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold18194   802716 1470 +   823664 I
e caeSp111.Scaffold626    194894 519 -  1189296 I

a score=13675.000000
s ce10.chrX              5630000 21 + 17718866 CAGTTGTTTA-AGTACGACCAC
s cb4.chrX              10929596 22 + 21540570 CAGATGTGCCAAGTGCAACCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350355 21 -  4500979 cagcTGTTTC-AGTGCAACCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    195413 21 -  1189296 CAGCTGTTTC-AGTACAACCAC
i caeSp111.Scaffold626  I 519 C 0
s caePb3.Scfld02_0       3889553 21 +  4147112 caGCTGTTTC-AGTGCAACCAC
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold18194   802716 1470 +   823664 I

a score=126910.000000
s ce10.chrX              5630021 217 + 17718866 GTGTAGTGCACTTTCTCTTTGT------CAAATCA---GAAATCTCCGCTTCTCATCG-TTAACAA-TAATAATCACGTGGTGT-CTCCACAGTGATGATATTATAAGAAT--ACACGTTACATATCGTCCAACGTCATCTCATCTTGTCT-----TGACTCCGCCCACTCTTCACGG---CCCCGCACATGTG-GGTGATGACTGCACTTC-CATCAG-TCAGTCGGTGATCCCTTGAACC
s cb4.chrX              10929618 227 + 21540570 GTGCTTTGTACATTTGCCTCTT------ATAATCACTCCGAGAAGTC-TCTGCTATCACCTCACGA-TAATCATCACGTGGTTTGTC--TCCGAAAGAATATTCTGACAATCGACACGTTACATATCCTTCAACATCATCGCATCTCGTCTCTGGGtcgctccgcccatttttgacAAT--CTCCACACGTGTG-GGAGGTTGAGGCATTTC-CTTCAA-TCATTCGTTGATCCCTTAGACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350376 227 -  4500979 GTGGTTTGTACTTTTGCCTCCT-TGTCCATAATCACTCGGAAACGCCGTCCTTTATCA-CTCACAA-CAATGATCACGTGGTCT-TT--TCTGAGGCAATATTCTAACATTCGACACGTTACATATCGTTCAACATCATCGCATCTCGTCT-----TGACTCCGCCTATTGTCGACTAT--CCCCACACGTGTGAGAAGGTTACGGCATTTC-CTTCAG-TCATTCGATGATCTCTCGAACC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    195434 227 -  1189296 GTGCTTTGTACTTCTCCCTCCGTTTTCCATAATCACTCGGAAACGCTGTCCTTTATCA-CCGACAA-CAATCATCACGTGGTTT-CT--TCTGAGACAATCTTCAAACAATCGACACGTTACATATCGTTCAACATCATCGCATCTCGTCT-----TGTCTCCACCCCTTTTAGGCAAT--CCCCACACGTGTG-GGAGGTTACGGCACTTC-CCTCAG-TCATTCGTAGATCAACCGACTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3889574 228 +  4147112 GTGCTTTGTACTTTTCCCTCCTACTTCCATAATCACTCGGAATTGCCGTCCTTTATCA-CTGGCCATTAATAATCACGTGGTTT-C---TCTGGGACAATCTTCTCACAATCGACACGTTACATATCGTTCAACATCATCGTATCTTGTCT-----TgtctccgcccacttttggcAAT--CCTCACACGTGTG-GGAGGTTACGGCATTTC-CCTTCGCTCATTCGTTGATCTCTCGAATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   804186 212 +   823664 GTATGCTGTCCTTT--CCTTAT------CTCATCACTGAAACTAACCGCCTGTTAGGG-CCGCCAA-TAAAAGTCACGTGGTGT-C---GCTGATACGATCTTATAAGAATTGACACGTTATACATCGTTCAACAACATAGCATCTCGTC------TAACCCCGCCCATTT----CAATGGCCCCACGCGTGCC-----GTCGCGCAGTTTCTCTTCAG-TCAGTCGTTGATCTTGTTAATC
i caeJap4.Scaffold18194 I 1470 I 93

a score=-12164.000000
s ce10.chrX              5630238 79 + 17718866 --TCACTGGTGGTAGCC-------TTCTCAAATT-----------CATTGTTGATTTTGACTCCAACTAATTGAACTCTATTTCCAGTGAACTACACAT
s cb4.chrX              10929845 58 + 21540570 -----TTGGGGATAGCC-------CTATTTCTTT---------TATTCTATT------------CACTATCTCT---GTATATCTTTTTC-----TAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350603 84 -  4500979 AACTGGTGGTGATAGCCATTTTgtttatctcttt---------tttattaCTGAACTT-TTTGGAACCATCTTT----CATCTCTAGTTC-CTGTTACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    195661 69 -  1189296 AACAGATAGTGCTATTC-------CTTTTTGTCGTCGTGACCCTTACCTCCTTACCtt---------------------atttctaattt-cta-gact
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3889802 88 +  4147112 AGTTGGTGGTGATAGCC-------CTTTTTGTTTATACTACTGTCTCTTTCTGAACTT-CCGGGAAC-ATCTTGATTGCATTTCCAATTT-CCG-CCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   804398 93 +   823664 I

a score=206539.000000
s ce10.chrX              5630317 230 + 17718866 TACACAATGAAAAAGTCTACACAACTCGCCAGACAAGTCATCAGAGCTATCGGATGTGCTAATGGACTTGCTGGAAGACAACTCGGATGTGAAAACGCAGTAGAGGTTATCAAAGCATCTACATATCTGGCTGGTGTTCAGACGAGACTTCCACTTGAATGGGGAAAAATCATAGAAGAGGTGAACACTGGAAGACATGCGAGTGCAATGTCAGGAGTTACACAGGTACT
s cb4.chrX              10929903 226 + 21540570 TTCAGAATGAAGAAAACTGCACAACTCGCCAGACAAATGATCAAAGCCATCGGATGTGCCAACGGATTGGCAGGCAGACAACTTGGTTGTGAGAATGCAGTAGAAGTCATCAAAGCTTCTCCATATTTTACAAATGTTCAACAGAGAATTCCACTGGAATGGGGAAAGATAATCGAGGAGGTTAACACTGGAAGACACGCCAGCGCACTTTCAGGAGTCACACAGG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350687 226 -  4500979 TTCAGAATGAAGACGACTACACAACTCGCCAGACAGATAATCAAAGCAGTCGGATGTGCCAATGGTTTAGCTGGAAGACAACTCGGATGTGAGAATGCTGTGGAAGTGATCAAAGCTTCTCCATTCTTCACAAATGTTCAAGAGAGACTTCCACTCCAATGGGGAAAGATCATAGAAGAAGTGAACACTGGACGACATGCAAGTGCTCTGTCAGGAGTCACACAGG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    195730 230 -  1189296 ttcaaaatgaagaagacaaCACAACTCGCCAGACAACTCATCAAAGCCGTTGGATGTGCCAATGGACTTGCAGGCAGACAACTCGGATGTGAAAACGCTGTGGAAGTTATCAAAGCGTCTCCTTACTTCACTGGAGTTCAACAGAGACTTCCACTGCAATGGGCTAAGATCATTGAGGAAGTGAATACAGGAAGACATGCCAGTGCACTATCAGGAGTTACACAGGTACG
i caeSp111.Scaffold626  C 0 I 37
s caePb3.Scfld02_0       3889890 228 +  4147112 TTCTAGC--ATGAAGACTTCACAACTCGCTAAGCAACTCATCAAAGCTATCGGATGTGCCAATGGATTGGCTGGCAGACAACTCGGATGTGAAAACGCTGTAGAGGTTATCAAAGCTTCTCCATATTTTACCAGTGTGCAACAAAGACTTCCACTGCAATGGGGAACAATCATTGAGGAAGTGAATACTGGCAGACACGCTAGTGCTCTGTCTGGAGTTACACAGGTAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   804491 230 +   823664 ttcagaatGAAGAAGTCAACTCAACTCGCCAGACAAATCATCAGAGCGGTTGGATGTGCGAATGGTTTGGCCGGAAGGCAACTCGGTTGTGAAAATGCCGTAGAAGTCATTAAAGCGTCTCCGTATTTTGCCAATGTTCAGCAGAAAGTTCCACTAAAATGGGGGAAAACCATTGAGGAAGTAAACACAGGAAGACACGCCAATGCCCTCACCGGAGTTACACAGGTATT
i caeJap4.Scaffold18194 I 93 C 0

a score=-15267.000000
s ce10.chrX              5630547 46 + 17718866 GTTCTCAATTTGCA-----AATTAAAACAATCATGCTTAAC----------TACTTTTGAT
s cb4.chrX              10930129 41 + 21540570 ----TCA-TTTAGC-----ATTTTAA---AGAGTTTCAAac---attactgtagttt----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350913 41 -  4500979 ----TTAGTTTTACTGGTGACTATAAGCCAGAGTATTTAAT------------TTCT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3890118 40 +  4147112 ---------TTGAC-----ATTTTAA---GGAACTGATAACAAAATGAACACGTTTT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   804721 37 +   823664 -----------------TgaataaaatggaaaaaccGAAAT---AGAACTAAACGTT----
i caeJap4.Scaffold18194 C 0 C 0
e caeSp111.Scaffold626    195960 37 -  1189296 I

a score=426717.000000
s ce10.chrX              5630593 763 + 17718866  
s cb4.chrX              10930170 772 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2350954 792 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    195997 783 -  1189296  
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       3890158 787 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   804758 822 +   823664  
i caeJap4.Scaffold18194 C 0 I 29

a score=-4727.000000
s ce10.chrX              5631356 41 + 17718866 TTATTTTAACTGTGTCGACCTAATTGATAATTGTTTTTCTC
s caeRem4.Crem_Contig0   2351746 36 -  4500979 CAGTTTCCACAATTTGAA--GACTAACATAATGtctat---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    196780 34 -  1189296 ------CTATAACAAGCA-TGACGAAATCATTTATTCTCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3890945 34 +  4147112 ----CCTTATCATAGGAACTGAATataacattgttttt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18194   805580 29 +   823664 I
e cb4.chrX              10930942  0 + 21540570 C

a score=286197.000000
s ce10.chrX              5631397 343 + 17718866 A-TTTCAGAAACACAATCGGTTACGGTCTCTCAATAGACTTGGATGGATTTGATGTTTCTTACGCACCAGCTGTTGGAACACCGTCTGCAGATGGAATCAATGCATTGGAGTTCATCAAGGCTCTTTTGACAATTGATTTGACAAAGTTGATTGCGACTGAAATTGTGGAATTCCTACCACGATTCGATGACACCCAAAGGACCAGCGAGCAACTTGTGTCCAGTTTGGTGGAGTATATTTACAAGACAAAGCAATTCCAAATCAACTCGGTTAATGAAATTGCACAACGCGTGAGCACGTCGGAACAATCTCAGAAAATTACAAGAGCAATGTGAATCTTTTT
s cb4.chrX              10930942 332 + 21540570 ------AGAAACACAATCGGATATGGACTATCAATTGATCTTGATGGTTTTGACGTATCGTATGCTCCAGCAGTTGGAACCCCATCTGCTGATGGAATCAATGCTTTGGAATTCATCAAGGCTCTTTTGACAATCGACTTGACCAAACTTATTGCCACGGAAATTGTGGAATTCCTTCCAAGATTCGATGACAACCAGAGAACCAGTGAACAACTTGTGTCAAGTCTTGTTGAGTACATTTATAAGACGAAACAATTCCAAATCAATTCGGTGAACGAAATTGCTGCACGTGTTAACAAGTCGGAAACGATTCAAAAAGTGTCGCAAGCGATGTGAAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2351782 341 -  4500979 ---ttcagaaatacaatCGGATACGGTTTATCAATTGATCTTGATGGTTTCGATGTCTCTTATGCCCCAGCTGTCGGAACACCGTCTGCAGATGGAATCAATGCACTCGAGTTCATCAAAGCTCTTCTGACCATCGACCTGACCAAACTCATTGCTACTGAAATTGTCGAGTTCCTTCCCAGATTTGACGACAATCAGAGGACGAGTGAACAACTCGTTTCTAGTCTTGTGGAGTACATTTATAAGACAAAGCAGTTCCAAATCAACTCGGTCAATGAAATTGCTGCTCGTGTTAGCAAATCTGAAAAGATTCAACAAGTTTCCCAAGCCATGTGATAATCTCG
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626    196814 344 -  1189296 ACCTTCAGAAACACAATCGGATACGGTTTATCAATTGATCTTGACGGATTTGATGTCTCATATGCACCAGCTGTTGGAACTCCATCTGCTGACGGAATCAATGCTCTTGAATTCATCAAAGCACTTCTCACAATTGATTTGACTAAACTGATTGCAACAGAAATTGTTGAATTCCTTCCAAGATTTGATGATGATAGAAGAACTAGTGAACAACTTGTGTCAAGTCTGGTTGAATATATTTACAAGACAAAACAATTCCAAATCAATTCAGTCAATGAAATTGCAGCCAGAGTCAGCAAATCAGAGCCAGTTCAACAAGTGTCGCAAGCCATgtgatcattttc
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3890979 342 +  4147112 --ttacagaaatacAATTGGATATGGACTTTCGATTGACCTTGACGGTTTCGATGTATCCTATGCTCCAGCCGTTGGAACTCCGTCTGCTGATGGAATCAATGCTCTTGAATTCATCAAAGCTCTTCTCACTATTGACTTGACCAAGCTGATTGCTACTGAGATTGTAGAGTTCCTCCCAAGATTTGATGATAGTCAGAGAACAAGTGAACAACTTGTATCGAGTTTGGTTGAATACATTTACAAGACAAAGCAATTCCAAATGAATGCAGTGAATGAGATTGCTACTAGAGTAAGCAAATCGGaacagattcaaaaagtgtcacaAGCGATGTGATTCTTCTT
i caePb3.Scfld02_0      C 0 I 3815
s caeJap4.Scaffold18194   805609 329 +   823664 -ATTTTAGAAACACAATTGGATATGGACTTTCAATAGATCTCGATGGGTTTGACGTATCTTACGCCCCAGCAGTTGGAACCCCGTCAGATGATGGAATCAACGCCCTCGAGTTTATCAAAGCTCTTCTGACAATAGATCTCACCAAACTGATTGCTACGGAAATTGTCGAATTCTTGCCCAAATTCGATGACAATCAGCGAACCAGTGAACAACTTGTGTCTAGTCTTGTCGAGTACATCTACAAGACAAAGGAGTTCCAGATGCAATCTGTGAACGAAATTGTTCAACGAGTTGGGAAATGTGATGAATCTGTCAGAGTCTCGCAATCT--------------
i caeJap4.Scaffold18194 I 29 C 0

a score=-2348.000000
s ce10.chrX              5631740 13 + 17718866 TTGTGAAACTTTG--
s cb4.chrX              10931274 10 + 21540570 ---TATAACAAca--
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2352126 11 -  4500979 --CCGTGATAATA--
i caeRem4.Crem_Contig0  I 3 I 11
s caeSp111.Scaffold626    197160 13 -  1189296 ttttgtacTTTTA--
i caeSp111.Scaffold626  I 2 C 0
s caeJap4.Scaffold18194   805938 13 +   823664 --TTGTGAGAATATG
i caeJap4.Scaffold18194 C 0 I 11
e caePb3.Scfld02_0       3891321 3815 +  4147112 I

a score=-1684.000000
s ce10.chrX              5631753 6 + 17718866 CGCATT
s cb4.chrX              10931291 1 + 21540570 ----t-
i cb4.chrX              I 7 I 2
s caeRem4.Crem_Contig0   2352148 5 -  4500979 ttcat-
i caeRem4.Crem_Contig0  I 11 I 2
s caeSp111.Scaffold626    197173 6 -  1189296 TTCATT
i caeSp111.Scaffold626  C 0 I 2147
s caePb3.Scfld02_0       3895136 6 +  4147112 cacatt
i caePb3.Scfld02_0      I 3815 C 0
s caeJap4.Scaffold18194   805962 6 +   823664 CACAAT
i caeJap4.Scaffold18194 I 11 C 0

a score=-11826.000000
s ce10.chrX              5631759 61 + 17718866 ----------------TT-------TTAT----AATAAAGCATTTAACTCGATAAAACACATAA-AAACGTATAAGAAAAGAGGAAAAA
s cb4.chrX              10931294 52 + 21540570 ----------------tc-------gaataTTAAACAACGAATCTGC------ATAATGAATGA-------TTATAAAAACT-TATCAG
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2352155 49 -  4500979 ----------------tc-------gCAT----AAtaacaatattga------aaaataaataaaactgctttaaaaaa-------cag
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       3895142 55 +  4147112 ----------------tc-------tttt----gaaaaagatgtTGA------ACAGCTTATCA-TGTAGTATATGAAAACGAGGACGg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18194   805968 61 +   823664 ATTTTCAATGTGCTAATCATACCAGTcat----aataataaaattat------cgaaaacaaga---------aaaaaaa---------
i caeJap4.Scaffold18194 C 0 N 0
e caeSp111.Scaffold626    197179 2147 -  1189296 I

a score=-2069.000000
s ce10.chrX             5631820  6 + 17718866 TGAAAA-----------------
s cb4.chrX             10931346 23 + 21540570 TGAAATTTCTTGAAAGTTAATGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2352204 12 -  4500979 tgaaaatt-----------acaa
i caeRem4.Crem_Contig0 C 0 I 3454
s caePb3.Scfld02_0      3895197  5 +  4147112 tgaaa------------------
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold626   197179 2147 -  1189296 I

a score=587.000000
s ce10.chrX             5631826 24 + 17718866 TCAAATGATAAAA-TTGTG--TTAGCA
s cb4.chrX             10931369 24 + 21540570 -CCAACTGTAAAACTTGTA--TAAGCA
i cb4.chrX             C 0 I 6009
s caePb3.Scfld02_0      3895202 22 +  4147112 -----tgataaaaactgtAAGTTACCA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2352216 3454 -  4500979 I

a score=43.000000
s ce10.chrX             5631850  82 + 17718866 AGAGTATGTGAACTGATAAGAACAGTGAC-------------------CAGCCGTTTTCTGTTTCAGCATTTT------CAATTCCTTTTAATATTATT-------------------ATTAGTTT
s caePb3.Scfld02_0      3895224 119 +  4147112 AGTGT-------TTGATAAGAAGACTGCCTTCTACATTTCATTCTTGACCGCTGtctcttgtttttcgttttttttccgcaattctctttattgatttttcatttttcgaataaacaTGTTAGTTT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             10931393 6009 + 21540570 I
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2352216 3454 -  4500979 I

a score=29.000000
s ce10.chrX             5631932 1 + 17718866 T
s cb4.chrX             10937402 1 + 21540570 T
i cb4.chrX             I 6009 C 0
s caePb3.Scfld02_0      3895343 1 +  4147112 C
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2352216 3454 -  4500979 I

a score=30108.000000
s ce10.chrX             5631933 279 + 17718866 --AATGGCACGACTGGATTGTAAAATTTGCTTGAAAGTTTACAAATCAAACCGCGCTAAATCCACACCAAGAATACTAACCAATTGTGGACATACTCTTTGTGAAGCTTGTGCGGAAACTCTCTTGGCACAGCACGTGGGTGAG---ATAATATGCCCGTATGATCGAAAAATCAC-------GATTATAGATGGTAAATTCAAAAAATGCGTTCAATC------TTTAAATATTTAATTT-TCAGGAGGAGTTGAACAACTTCATAAAAACTATGCAATTCTTGCTTATATTGACGA
s cb4.chrX             10937403 285 + 21540570 --AATGGTTCGTCTGGAATGTAAGATTTGTTTACGCGAGTATAAAACCAACATTGCGAAGCTGACTCCTCGAATTTTGACAAAATGTGGCCACACTTTATGCGAAAGCTGTTGCGAAATACTTTCCAATCAAAACGAAACCAAGGACTTGATATGTCCGTTTGAtcgaaaaatgact------aaaattaATCGTTAGTTATTGAATATAATTTCTAGT---AGGCTTAC--ATatattttctcagaaaatatGCAAGAACTAATGAAAAACTTTGCTATCACGGAGTATCTTGATGA
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2355670 282 -  4500979 --aatggccCGTCTTGAGTGTAAAATATGTCTACAAGAATACAAAGCAAATGTACCAGACTTGACTCCAAGAATTTTATCGAATTGCGGTCATACAATTTGTGAAGGTTGTGCAGTCACTTTATTGAATCAAAACGAGAATGGAGATATTGCATGTCCATTTGATCGCATAGTGACCGAGTTGGAAGGTAAGGGtcaataaatttatattttttcgaat--------------tttcttttaCCAGGCTCCGTTCAAGAGCTACACAAAAACTTTGCCATAATTGAGTATTTGGAGGA
i caeRem4.Crem_Contig0 I 3454 I 1525
s caePb3.Scfld02_0      3895344 273 +  4147112 AGGATGCCTCGACTTGAATGTAAGATATGCTTCCATGAGTACAAAAATAATCGGAATAAGCGAACTCCCCGTATATTGACCAATTGTGGTCACACCGTCTGTGAGAGATGTGCTGAAAGTCTGATGA---------AGGATGGGAAAATAATATGCCCGTTTGATCGCGAAACAAC-------AACGTTCAccggtaa------actttttttttgagctgaaaatttaa--CTATGACAT-TTAGGTGGTGTGCAAAACCTTCACAAAAACTTTGCCATTGTCAGTTTCTTGGATGA
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold626   197179 2147 -  1189296 I

a score=-387.000000
s ce10.chrX             5632212 11 + 17718866 ---ACTGCAAGAAG
s cb4.chrX             10937688 11 + 21540570 ATTGAACCAAG---
i cb4.chrX             C 0 I 4337
s caePb3.Scfld02_0      3895617 11 +  4147112 ---AATTCAAGAGG
i caePb3.Scfld02_0     C 0 C 0
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2355952 1525 -  4500979 I

a score=380.000000
s ce10.chrX             5632223 45 + 17718866 AAGGAAATGTATCGGACGACGAAGAGGAGCCTGAGCAGGGTTAGT
s caePb3.Scfld02_0      3895628 42 +  4147112 AAGATGGAACACCACAGATTGAACAGG---CAGAGCCAAGTTAGT
i caePb3.Scfld02_0     C 0 I 1879
e cb4.chrX             10937699 4337 + 21540570 I
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2355952 1525 -  4500979 I

a score=0.000000
s ce10.chrX             5632268 6488 + 17718866  
e caePb3.Scfld02_0      3895670 1879 +  4147112 I
e cb4.chrX             10937699 4337 + 21540570 I
e caeSp111.Scaffold626   197179 2147 -  1189296 I
e caeRem4.Crem_Contig0  2355952 1525 -  4500979 I

a score=1100.000000
s ce10.chrX             5638756 35 + 17718866 CTTCATCTTCCGTTTCATAGCCTCTTTGCAACCGT
s caeSp111.Scaffold626   199326 35 -  1189296 cttcatcgtCAGAATCAAAACCTTTTCGGTTTCGT
i caeSp111.Scaffold626 I 2147 C 0
e caePb3.Scfld02_0      3895670 1879 +  4147112 I
e cb4.chrX             10937699 4337 + 21540570 I
e caeRem4.Crem_Contig0  2355952 1525 -  4500979 I

a score=-1429.000000
s ce10.chrX             5638791 112 + 17718866 TCATGGTCCGAGA-----TACTAATTCCGGATTGTGAATCACTGGAGTCACTAGAGCTGTTTCTCCTTTCTCTT--------------TCATCCCCACACTCACT---AGTGCTACGCATTG-GTGCAGACGATG
s caeRem4.Crem_Contig0  2357477 113 -  4500979 TCTTGGTCCAGAAGATGTCCCTTCTTCTGGA-------TCGTGAGGctctctcgtt--tcttcttcttcttcttcatcgtctcctgtattatctttttcttctttttgagtttcagtctctt-------------
i caeRem4.Crem_Contig0 I 1525 C 0
s caeSp111.Scaffold626   199361 127 -  1189296 TCATTATCGGAAA-----CACTGATTCCAGATTGGTCGTCGCTGGAATCACTGGATGAGCTTCTCCTTCTTATTGGCCCATACTCG--TTATCCGAATCCAGGTTGT-AGTTATAACGACTGGGTCCAGAAGATG
i caeSp111.Scaffold626 C 0 C 0
e caePb3.Scfld02_0      3895670 1879 +  4147112 I
e cb4.chrX             10937699 4337 + 21540570 I

a score=-3267.000000
s ce10.chrX             5638903 22 + 17718866 ---CGTTTTCTTCCAAATCATTCGA-------
s caeRem4.Crem_Contig0  2357590 22 -  4500979 ---cgtcctcttc---atcat----cgacttc
i caeRem4.Crem_Contig0 C 0 I 12
s caeSp111.Scaffold626   199488 22 -  1189296 TTCCTTTTTCTGG---ATCATGTGG-------
i caeSp111.Scaffold626 C 0 C 0
s caePb3.Scfld02_0      3897549 15 +  4147112 TCTCGTCATCT------TCAC-----------
i caePb3.Scfld02_0     I 1879 C 0
e cb4.chrX             10937699 4337 + 21540570 I

a score=-651.000000
s ce10.chrX             5638925 107 + 17718866 -------------------------ATCTTCTACATCATCAACACGTTTATCATCTT---------TGTTTCTATGTTTTTTA---CAAACTTCTTTC---TCACTGTCATCCTGCTCCTCTTCCAACCCATATGTGCTAACTCCTG
s cb4.chrX             10942036  95 + 21540570 -------------------------atcttcttcctcatcgCCAG---------------------CTTTTTCAGCTCCATTA---TCCTTTTCATCA---TCAGTATCTTCTCGCTCATCTTCCAAACCAAATTCGTTGAGTCCGT
i cb4.chrX             I 4337 C 0
s caeRem4.Crem_Contig0  2357624  98 -  4500979 -------------------------ctcctcttcttgttcgccat---------------------catcttcatttttttcc---tcttcttcctcactCTCAGTTTCCTCTCTCTCATCTTCTAAACCATATCGAGCAAGTCCTG
i caeRem4.Crem_Contig0 I 12 I 42
s caeSp111.Scaffold626   199510  92 -  1189296 TTGTACTGGC----TCATCCTTGGTTTCCTcttctttatctacat---------------------tggttttttccttttca---tcttcttcttta---tctacattggtgctttctttct------------------------
i caeSp111.Scaffold626 C 0 C 0
s caePb3.Scfld02_0      3897564 141 +  4147112 ---TACTatcctcttcatcatccacttcatcttctttttcggCATCCTTTGAACCCCGTTTAGGTGTCGCGCTCTTTTTTGCAGGTTCTTCATCACTG---TCAGTCTCGATACGCTCCTCTTCCAGACCAAACCGCTCAACTCCAG
i caePb3.Scfld02_0     C 0 C 0

a score=-2001.000000
s ce10.chrX             5639032 27 + 17718866 ---------GAAATTCTTCGTTGGCATCCAAAAACA
s cb4.chrX             10942131 27 + 21540570 CGAGCATGTCATCCATTCCACCGGTCT---------
i cb4.chrX             C 0 C 0
s caePb3.Scfld02_0      3897705 27 +  4147112 ---------TAAGAACTCTGCCGTCATCACCATATA
i caePb3.Scfld02_0     C 0 I 24
e caeSp111.Scaffold626   199602  0 -  1189296 C
e caeRem4.Crem_Contig0  2357722 42 -  4500979 I

a score=-8923.000000
s ce10.chrX             5639059 69 + 17718866 CATC------TTCACTTG---AAACT---------------TCAGTTTTCTTTTCTTCAGAATTCGCCTTCTCGAGTTTACATTTTGC-----TTGCT-------------
s cb4.chrX             10942158 84 + 21540570 CATCTTCCCCATCGTGTTCCATCTCT---------------TCTTCCTGCTTCCTCTCAGATTTGGAAGCCTC---------TTTTGG-GTCTTCACT--AATGGATGGTT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2357764 75 -  4500979 CATC--------CATGTT-TGTATTC---------------TCTGTGTCCATTCTTTCAGTTTCCGGTTTTTC---------CTCTGG---CTTCACTTCATCTGAAGGCT
i caeRem4.Crem_Contig0 I 42 C 0
s caeSp111.Scaffold626   199602 68 -  1189296 catc------attcttttcctttttc---------------tcatcgttcttttcttcagaagtaacttcttc---------ttctatcttctttact-------------
i caeSp111.Scaffold626 C 0 I 622
s caePb3.Scfld02_0      3897756 73 +  4147112 CATC------ATCAACTTCATCATCCGACAGAAATATGGGTTCATGTTCCTGTccttcagaagaagcagattt---------TCCTGG-----------------------
i caePb3.Scfld02_0     I 24 C 0

a score=-4409.000000
s ce10.chrX             5639128 24 + 17718866 CACT---GTTCGATGAGCCCACTGGAA---------
s cb4.chrX             10942242 24 + 21540570 CGTT---TTGAGTTGAAGAAGACGAAA---------
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2357839 27 -  4500979 CATTGACTTGATCCACACTCGTTGGAA---------
i caeRem4.Crem_Contig0 C 0 C 0
s caePb3.Scfld02_0      3897829 23 +  4147112 -------------AGCGGGCGCTGAGAGTGCCCGAC
i caePb3.Scfld02_0     C 0 I 3
e caeSp111.Scaffold626   199670 622 -  1189296 I

a score=-667.000000
s ce10.chrX             5639152 1 + 17718866 ------C
s cb4.chrX             10942266 7 + 21540570 CGGCATT
i cb4.chrX             C 0 C 0
s caeRem4.Crem_Contig0  2357866 7 -  4500979 CCACATT
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold626   200292 1 -  1189296 ------C
i caeSp111.Scaffold626 I 622 C 0
s caePb3.Scfld02_0      3897855 1 +  4147112 ------T
i caePb3.Scfld02_0     I 3 C 0

a score=8995.000000
s ce10.chrX              5639153 261 + 17718866 TTTTGGTTTTCGTTTCACTCTTCGTTTACCAAATTGGCGCGTTGAACGGATTTTCTTGTGTGGTGGCACCCTGGCTCTGATGATCTTGATCTTATTCGGTTTTTCATTTAATTTCTTCTTTCTTCG----------------CCTTGTTTTTTTGTCTTTC-----------------------AGTTCATCATCCGT------------GGACTCGTAG-AACACTGTTTCAAGAGGTTTTGGAGCAGGGCCGGGAATGTCTCTGAAAATTTAATT----AATACATAAAATCAGT-----TAAATTTAATCTCTATCTC----------A
s cb4.chrX              10942273 240 + 21540570 CTTTGGCTTTCTCTTGACTCGCTTCTTCCCGAACTGACGAGTggaaaagtattttttgtgCGGTGGAACCTTTGCTCGAATGATCTTCACTTTGGGC------TCCTTTGATTTTGGTTTCGG-------------------TTTTGATTTCTTCGGTGAT-----------------------AACAAAACGTCTTT------------AGGCTTTTTG-AACTC---------AGCTATAAGAGCTGGTCCAGGGGAgcctctgaaa----aaat-------atagaaacaca-------ttttttcggttt----atCaaaaaaaCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2357873 242 -  4500979 CTTCGGCTTTCTCTTGACCTTTCTTTTACCAAACTGACGAGTTGATACATGTTTCTTGTGTTCCGGAACTTTAGCTCTTATGATTTTGACCTTTGGC------TCCGCTGACTTCTTTCTTGG-------------------CTTCTGTTTTTTGACTGGC-----------------------GCAGTCTCATCCGG------------CGACTCATAGTAAGTCGG-------AGCTTTTGGAGCTGGTCCTGGCacatctctgaaaa--taatt-------gcaTGAacgaaatgtttttgttttgggTCT----CTT----------A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    200293 251 -  1189296 CTTTGGCTTTCTCTttattctcctttttccaaaTTGGCGAGTCGATCTTATTTTCTTATGCGGTGGGACTCTTGCACGGATGATCTTTGGTTTA---------TCCGATGATTTACTCCtttttttA-------------TCTGTtgattttcctctt---------------------------------cttcttgttggTTCCA---TAACATGCATAAAATCGGGAGGTGGGGGCGGAGGTGCTGGACCGGGGACATCTCTTAAAA--TTATC----TTTATAGAAAACAA-------GCATACAAAAAAGCTCCTT----------A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3897856 248 +  4147112 CTttgactttc------ttcttctttttccgaaCAAACGAGTTGATCGTAtttttttATGATCCGGAACTCTGGCTcggatgatttttggcttG---------TCACTTGATTTGCTTCTCTT-------------------TGTTGACTTGCTACGTGAC---------------------------TTACTTCTCGACTTTTTCACTTTAGCTCCCTCTACAACAGCAGCTTCAGGCTTTGGTGCGGGTCCAGGAATATCtctgaaaa--tagttgaaatttgagaataatgA-------TGATTGGGGAAA----CTT----------A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    12632 273 -   720316 TCTTGATTTTC--------CTGCGCTTTCCAAACAATCTGGTGGACCGAATTTTCTTATGCGGAGGCACCTTTGCTCTACGAATCTTGACCTTTTCA------ACTTTTGGTTTACTCTGTCTCCCACATATTTCATCGCCCTCTTGcttctttctcttctttttcatgGAAAAGTTCTTGGAGTTCTCTTCGTCCGG------------CGATTCATAGTAACTTGG-TGCTTTTGGTTTTGGAGCCGGACCAGGTATGTctctgaaaa--caaaa----tttgtttCAATTGA-------ACACTGAAACA-------------------
i caeJap4.Scaffold18213 N 0 I 81

a score=1055.000000
s ce10.chrX              5639414 75 + 17718866 CTTTTCCTCTTTCAGTGATTTTGTTTTCTCTTCTTTT------AGCTTATCCTTCGATTTCCCTCGATTCTTAGCTTGAAT
s cb4.chrX              10942513 66 + 21540570 CTTGTCATCATCGAGAGTG---------ATAGTTgct------atcttcttttttgatttcgttTGTTTTTGTGATCCGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358115 75 -  4500979 CTTTTCATCAATCACGTTGTTTTGTTCAGTAttcttt------tgcttctccttcttcttcttcttcttgttttgtttaCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    200544 56 -  1189296 CTTGTCATCAACAACGTTTGGTTCATTCCCagccttc-------------------------ttctcttttttgttagaGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3898104 81 +  4147112 CTTGTCATCGACAatttccaacttcttcttatttttcctgttcttctttttctctttcttctttctcttcttttcttcaat
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold18213    12905 81 -   720316 I

a score=-4150.000000
s ce10.chrX              5639489 57 + 17718866 CGGATTTGCTGACGTAGACTGTTCTGCCTCT------------TCTTCTTCTGGCTTAACCGCCAACTT
s cb4.chrX              10942579 42 + 21540570 ---------TGTTGATGGTTGGTTTGAATCT------------TCTGTTTCCAAATTGGCttt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358190 42 -  4500979 ---------CGGAGAGATTTCCTTTGGCTCC------------TCGAGTCCCAGTTCAACTCT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    200600 46 -  1189296 -----------TTGaacgtttcttcttctccacttTATGAGGTTCGAGTCCCAGCTC------------
i caeSp111.Scaffold626  C 0 I 31
e caePb3.Scfld02_0       3898185 73 +  4147112 I
e caeJap4.Scaffold18213    12905 81 -   720316 I

a score=964.000000
s ce10.chrX              5639546 5 + 17718866 TTTAG
s cb4.chrX              10942621 5 + 21540570 ttttG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358232 5 -  4500979 TTTAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3898185 73 +  4147112 I
e caeJap4.Scaffold18213    12905 81 -   720316 I
e caeSp111.Scaffold626    200646 31 -  1189296 I

a score=-1858.000000
s ce10.chrX              5639551 11 + 17718866 CGTTAC---------TTTTC
s cb4.chrX              10942626 20 + 21540570 AAGGACGTGCATTTACAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358237 20 -  4500979 CAGGACGTATGTACATTATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18213    12986 11 -   720316 ---------CGTACATCTTT
i caeJap4.Scaffold18213 I 81 C 0
e caePb3.Scfld02_0       3898185 73 +  4147112 I
e caeSp111.Scaffold626    200646 31 -  1189296 I

a score=43105.000000
s ce10.chrX              5639562 173 + 17718866 GGTTCACTCTTGAATGCTACCACGTATCTCTCAGATACTTCCATTGGATCTGAGAGTTTTCCCGGCTTCTGATTGTCCGTAAATCTAATTTTATAAAATCCAGATACAATTTTAGGTGGTTCATGGACAATTCCTGAAAATTGA------ATTTCAA--------TGGGTTTGAAAAAA-------CACAATTT
s cb4.chrX              10942646 171 + 21540570 GGATCTTGCCTAAACGCCACTACATATCTGTCTGAGACTTCGACTGGATCCGCATAATTACTGGCTCGCTGGTTGTCGACAAAacgaattttgtattttccagaaacttggTCTGGAGGCGCGTGCACTATTCCTATAACGAAACGCAAGAATTATA----------------GCAGAG-------CTGCAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358257 173 -  4500979 GGATCTTTCTTAAAAGCAGTGACATATCTATCCGACACGGGCACCGGATCAGAGTATTTGCTGGGTTTATCGTTGTCGACAAAACGGATTTGATAATGTTCAGATGCTCTTTTGGGAGGCTCATGAACGATTCCTAAAATGtaa------aattatg--------tataaaacGGATAA-------TATCATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    200677 165 -  1189296 GGATCTTTTTTATAGGCAATGACGTATCTATCTGAGACCGCCAACGGATCAGAATATTTATCCGGTCTTTGATTGTCAACGAAACGAATCAGATAGGAGTCGGATGCCATTTGTGGTATTCTATGGACAATGcctaaaaatcag------aatgcac----------------tgaaaa-------ttcaattc
i caeSp111.Scaffold626  I 31 C 0
s caePb3.Scfld02_0       3898258 172 +  4147112 GGATCTTTCTTGAATGCCAAAACGTATCTATCGGAAACTTTGAGAGGATCTGAATAGTTTCCAGGTCTTGTATTGTCGATGAAACGAACAAGGTAATGCCCTGAAGCCTTGTCCGGTGGAGTGTGAACcaatcctgaaaatcaa------tctTTCT----------------TGAAGAAAACTGGACTATTTT
i caePb3.Scfld02_0      I 73 C 0
s caeJap4.Scaffold18213    12997 181 -   720316 GGATCCTTTCTGTACGCGACTACATAGCCCTCAGACACCTCTGacggttttgaaaatttcttcgCGTCATCAGTGTCAACAAAGCTGATTATGTACTTTCCAGATGAGGTGTCTGGACTTTTGTCCACTCTTCCTgaatataca------ttttttaacttttaatgaatttttaaatt-------taaaattt
i caeJap4.Scaffold18213 C 0 I 2340

a score=-38.000000
s ce10.chrX              5639735  9 + 17718866 G----------TACCGTCG
s cb4.chrX              10942817 12 + 21540570 GC----AT---TACCTTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358430 13 -  4500979 GTA---AT---TACCTTCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    200842 19 -  1189296 gcAAAGATCTATACCTTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3898430 15 +  4147112 GTA---ATCT-CACCTTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    13178 2340 -   720316 I

a score=108820.000000
s ce10.chrX              5639744 200 + 17718866 TAAAAGCAGGTCGTCCCTGGATACACTGCCAAAACGATTGCATTTTCCGGAAGTGCCATGTGCGGATATTTGTCATAGTTCACGGTAAATCTCGGCATTGGGATCAGCTGTTTGCGGGTGAAGACAAGAAGTTTCTTCTCCTGGTCGTCAACATCGATACATTCATAACGATGGTTGGAAATAGAACCTTTAACCTGAAA-
s cb4.chrX              10942829 200 + 21540570 TAGAAACACGTTGTTTTTGGGAAGAGTGCCAAGATGATAGCATTTTTTGGGAAAGCAAGCCAGGGATACCGTTTGTAATCTACAGTATACTTTGGCATAGGTATGAGCTGTTTCCGAGAAAACATGACAGGCTTCATTTCTTTGTCGTCGGTATCGAAACACTCGTAGCGGTTGTTCGAAGCTGCGTTAATTACCTGAAA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2358443 200 -  4500979 TAGAAGCACGTTGTGTTAGGGAAGAGAGCCAAAACAATTGCGTTTTTTGGTAAGGCAAGATTTGGGTATTGACAATAGTGGACGGTATACTGCGGCATTGGTATGAGTTGTTTCCGAGCAAACACTGCgacttttctctcttcatcgTCAATGTCGATGCATTCGTAGCGGTGGTTAGAAACTGACCCAACAACCTGGAA-
i caeRem4.Crem_Contig0  C 0 I 103
s caeSp111.Scaffold626    200861 200 -  1189296 TAGAAGCAAGTTGTTCCTGGATATATAGCAAGAACAATTGCGTTTGCCGGAAACGCCATGTTTGGATGTCTCCTATAGTGAACTGTTTGGTGTGGCAGTAGAATGAGTTGCTTGCGAGCAAATACAGCAACCTTCCGGTCTCGGTCATCAACATCAACACACTCATATCTATGGTTGGCAATTGGTCCAATAACCTAAGA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3898445 200 +  4147112 TAGAAACAAGTTGTTCCTGGGAACAATGCCAGCACAATTGCATTCTTTGGGAATGCCATGTTTGGATAAAGATTGTAGTGCACGGTAAACTGTGGCAATGGGATGATTTGCTTCCGAGCAAATACGGCAACCTTCCTGTCTTGGTCATCAACATCAATACATTCATAACGATGATTGGAGACTGGACCAATGACCtgcaa-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    15518 201 -   720316 TAGAAGCACGTCGTTCCTGGATACAGCGCCAGAACATGTGCGTTCGGTTTGAAAGCCATGAAATTGAACTTTTGGTAATCACACGTAAATTGTGGAAGTGGAATTAACTGCTTCCTAGCAAAAGTTGCCACCTTTTTATCCTCGTCGTCAATGTCGAGGCATTCATATCTCTGATTAGACACAGAACGGGACACCTAGAAA
i caeJap4.Scaffold18213 I 2340 C 0

a score=-1268.000000
s ce10.chrX              5639944 5 + 17718866 AATAA--
s cb4.chrX              10943029 4 + 21540570 -ATTA--
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold626    201061 5 -  1189296 GATAA--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3898645 5 +  4147112 aatga--
i caePb3.Scfld02_0      C 0 I 104
s caeJap4.Scaffold18213    15719 5 -   720316 --TACCG
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=1296.000000
s ce10.chrX              5639949 8 + 17718866 ATTTTCTG
s cb4.chrX              10943034 8 + 21540570 ATGTTCTA
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold626    201066 6 -  1189296 --TTTTTG
i caeSp111.Scaffold626  C 0 I 191
s caeJap4.Scaffold18213    15724 8 -   720316 ATTTTatc
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3898650 104 +  4147112 I
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=-521.000000
s ce10.chrX              5639957 5 + 17718866 A---TCAA
s cb4.chrX              10943042 8 + 21540570 AATTTTAA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213    15732 5 -   720316 ---ataaa
i caeJap4.Scaffold18213 C 0 I 22
e caePb3.Scfld02_0       3898650 104 +  4147112 I
e caeSp111.Scaffold626    201072 191 -  1189296 I
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=343.000000
s ce10.chrX              5639962 17 + 17718866 TTTGTTAGTTATGTTTT
s cb4.chrX              10943050 15 + 21540570 TTGGCT--TTATACTTT
i cb4.chrX              C 0 I 931
e caePb3.Scfld02_0       3898650 104 +  4147112 I
e caeJap4.Scaffold18213    15737 22 -   720316 I
e caeSp111.Scaffold626    201072 191 -  1189296 I
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=0.000000
s ce10.chrX              5639979 632 + 17718866  
e caePb3.Scfld02_0       3898650 104 +  4147112 I
e caeJap4.Scaffold18213    15737  22 -   720316 I
e cb4.chrX              10943065 931 + 21540570 I
e caeSp111.Scaffold626    201072 191 -  1189296 I
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=273.000000
s ce10.chrX              5640611 1 + 17718866 T
s caePb3.Scfld02_0       3898754 1 +  4147112 T
i caePb3.Scfld02_0      I 104 C 0
s caeJap4.Scaffold18213    15759 1 -   720316 T
i caeJap4.Scaffold18213 I 22 C 0
e cb4.chrX              10943065 931 + 21540570 I
e caeSp111.Scaffold626    201072 191 -  1189296 I
e caeRem4.Crem_Contig0   2358643 103 -  4500979 I

a score=180.000000
s ce10.chrX              5640612 1 + 17718866 T
s caeRem4.Crem_Contig0   2358746 1 -  4500979 T
i caeRem4.Crem_Contig0  I 103 C 0
s caePb3.Scfld02_0       3898755 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    15760 1 -   720316 T
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10943065 931 + 21540570 I
e caeSp111.Scaffold626    201072 191 -  1189296 I

a score=53138.000000
s ce10.chrX              5640613 261 + 17718866 ACCTCCGCTAAAATCCATGTATTTGTTTCTTCAACAAAAGCAGCGACTTCGTCGTATTTTTCCAATCGCGTGTTTTTTTGCAATGGAAGAGCACCGGCTCCATAAGGCTCTGGATTTTTCTCCATGTTTATTATGGGAAGACATCCATGTTTGAGCTTCATTATTTCAATTGCGTTCAAGTCCCCTTTCTCTCGTGATTCATTGATTGCGTTTGCTCTCCATAGCTTCATGTTATTGAT-TAATCTGAAATCAAAACATTTT--
s caeRem4.Crem_Contig0   2358747 250 -  4500979 ACTTCTGCCATAATCCATGTTTTGGATTCTTCCACGAAAGCTGCAACTTCATCATCCTTCTGTAGTTTCTTGTTGTCTGGCCACGCGTATCCCCCTGCTCCAAACGGTTCAGACTTAGAACTTGGATCCCAGATGGGTAGACATCCGTGTCTTAGTTTCAACATTTCGATGGCATTGAACTCTCCTCTACGTTTTGCTTCGTTGATTGCCTTCGACCTCATTGCTTTCATCTCATTAAGGTAATCATTAA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    201263 256 -  1189296 ACCTGTGCTAAAATCCATGTTTTAGTTTCTTCCACAAATGCAGCAACTTCATTTCCTTTCTGAGGCCGTTTATCATCTGCAAATGAAATGCCACCTGCTCCTTCACCATTTGGTTCCGCATCCGGATCCCAGATTGGAAGACATCCAACTCTTAATCTGAGCAGTTCAATTGCATTTAGAGCGGACGTGTCTCGAGCATGATCCACTGCATGCTCTCTCCATTGTTTCATCATGCTGAGATGAGCTTGCACGAA------TT--
i caeSp111.Scaffold626  I 191 C 0
s caePb3.Scfld02_0       3898756 256 +  4147112 ACATCTGCCAGAATCCATGTTTTGGTACTTTCCACATAAGCTGcgacttcttctcctttctccgGACGTTTATCATCTGGCCAAGCAACTCCACCAGCTCCATGCCCAGTTGGGTGTTCATCTGGATTCCATAATTGTAGACATCCATCTCTCAATTTCAGGATTTCGATTGTGTTGAGTTCAGCCTTATCACGAGCAACGTCCACGGCGTTATTCCTCCACTCTTTCATCATTGCTAAATGTTTACCTATGAA------TT--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    15761 257 -   720316 ACCTCTGCCATAATCCACGTTTTGCTGGTTTCTACAAAAGCCACAACaggctcttttttttccaaacgcTTCTTGTCCGGCCATGCTAGTGCTCCTGTTCCGTACGGTTCTCTGTTGTGATTGCAGTCCATGAGCGGAAGACATCCATGTTTCAGATTCAAGTATTCTAAAGCATTGACCTCTCCCTTGTCTCTTGCAACATCAGCTGCGTCTAGTCGCCACTTCTTCATTCGGTTGAT-Caatctttaaaaaa------gttt
i caeJap4.Scaffold18213 C 0 I 1983
e cb4.chrX              10943065 931 + 21540570 I

a score=-15992.000000
s ce10.chrX              5640874 189 + 17718866 TTTTTGTTT-------TAGAGATTTAAATTTTCAAATAACTCAAATTAAACTTTTCACTGTTTATTTACTTACTCTTCTAATTGATTCATTCCTTCTTGTCCCTGATTCAAATGTTTCTTGTAAAGAGTCTTTGCTTCATTCTAAAAA--ATGAAAAAAATTAGGGAAAG-----TGCATTTTAAGGCTCCATTATTAATATA---
s caeRem4.Crem_Contig0   2358997 100 -  4500979 CTTTCATTTGACCAGGTAA----CAaagtttta---------------------------------------------------------------------------tagtttttctttat-tattaCTTCGTGTTCTGCCTGAAAATTGACTATCAATTCAATCACAAACAGTTCAAC--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    201519  95 -  1189296 TTTGGCTTT-------CAA----CCAGATCACG---------------------------------------------------------------------------CAAATGTTTTTCATAGACGACTACTGCcttttcctggaaa--aa---acaatagaGATACAA-----TCCACT---------------GGTTCCAAAt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3899012 103 +  4147112 CGTTGGTTT-------TAG----TTACATTCTC---------------------------------------------------------------------------CATGTGTTCTCCGTATAAGACACCGATCTTTTCCTGTAAA--AATAGGGAATTTAGATGTAA---GTTGTACTTT---------TTTGGGTTATA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10943065 931 + 21540570 I

a score=-996.000000
s ce10.chrX              5641063 518 + 17718866  
s cb4.chrX              10943996 553 + 21540570  
i cb4.chrX              I 931 I 1332
s caeRem4.Crem_Contig0   2359097 533 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    201614 560 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3899115 525 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    16018 1983 -   720316 I

a score=9016.000000
s ce10.chrX              5641581 67 + 17718866 ----GGTGGGGG--------CCCACCTATCTTGTGTAATAGGTGG-----TTAGG-ACCATAATCGTTTGGATGTAGAGCAGATG
s caeRem4.Crem_Contig0   2359630 71 -  4500979 GAGAAACGGC----------CCCTCATTCTTTGTGTAAC--GCAGTCgccttttt-tttgtaattgttcGGA-GAAGAGCAGATG
i caeRem4.Crem_Contig0  C 0 I 219
s caeSp111.Scaffold626    202174 71 -  1189296 ----GACGGAGGACAGGGCCCCCACATTCGTTGTGTAAT--CTGG-----TTTTT-CACATAATTGTTC-GC-GAAGAGCAGATG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3899640 63 +  4147112 ----GACGGG----------CCCACATACGATGTGTAAT--CTGG-----TTTTCGGAGATAATTGTTCGGA-GGAGAGCAGATG
i caePb3.Scfld02_0      C 0 I 964
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10944549 1332 + 21540570 I

a score=522.000000
s ce10.chrX              5641648 21 + 17718866 ------------CACAAAATTATTGGTTTCAAG
s caeSp111.Scaffold626    202245 33 -  1189296 GTGGgataggaagaaaaaattaatgggTTGAAG
i caeSp111.Scaffold626  C 0 I 538
e caePb3.Scfld02_0       3899703 964 +  4147112 I
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10944549 1332 + 21540570 I
e caeRem4.Crem_Contig0   2359701 219 -  4500979 I

a score=0.000000
s ce10.chrX              5641669 1162 + 17718866  
e caePb3.Scfld02_0       3899703  964 +  4147112 I
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10944549 1332 + 21540570 I
e caeSp111.Scaffold626    202278  538 -  1189296 I
e caeRem4.Crem_Contig0   2359701  219 -  4500979 I

a score=282.000000
s ce10.chrX              5642831 3 + 17718866 ATG
s caeSp111.Scaffold626    202816 3 -  1189296 ATG
i caeSp111.Scaffold626  I 538 C 0
e caePb3.Scfld02_0       3899703 964 +  4147112 I
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10944549 1332 + 21540570 I
e caeRem4.Crem_Contig0   2359701 219 -  4500979 I

a score=2999.000000
s ce10.chrX              5642834 16 + 17718866 ACACGTTTATTA-TG---AG
s caeRem4.Crem_Contig0   2359920 16 -  4500979 ACACGTTTATTT-TA---AG
i caeRem4.Crem_Contig0  I 219 C 0
s caeSp111.Scaffold626    202819 20 -  1189296 ACACGTTTATTTATTCACAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3900667 17 +  4147112 acACGTTTATTCCTG---AT
i caePb3.Scfld02_0      I 964 C 0
e caeJap4.Scaffold18213    16018 1983 -   720316 I
e cb4.chrX              10944549 1332 + 21540570 I

a score=8598.000000
s ce10.chrX              5642850 17 + 17718866 AACATTATTTACACATA
s caeRem4.Crem_Contig0   2359936 17 -  4500979 AACAGTATGTACAAAta
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    202839 17 -  1189296 AACAATATTTACAAACA
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       3900684 17 +  4147112 ATCAAAATGTACATAca
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213    18001 17 -   720316 AACACAATGTACAAACA
i caeJap4.Scaffold18213 I 1983 C 0
e cb4.chrX              10944549 1332 + 21540570 I

a score=218301.000000
s ce10.chrX              5642867 308 + 17718866 ------AACATTAGTTTAGATTAACATGGTGTTCCACAAGTTGGTACCCTTCTGTTCGAAGTGTTTTTGTTTCCATCAATATTCGTAGACGACGCGAACTGCTGTTCAGGTGGTATCATGATTCTCATCCGCCGGAAACCGAACATAGGGCACCTG--------------AAAACAAAACGAAACAATT-TTTATTCATTAGAATCGTCC--------AAT-TACCTTAACATTTTTGTCACATGAGCTTTCATGGAACGGGAATATATCAACAACAGCCAGCCAGAAATGCCACAGTACAAATCATTGATAACATCGTAGAGAAGATAAAAGACCTG
s cb4.chrX              10945881 305 + 21540570 ------AATTTTAACTTTCCCTAACAAGGAGTTCCACATGTTGGAACCCTTCTATTCGAAGTATTTTTATCCCTCTCGACATTGGTGGATGATGCGAATTGTTGTTCCGGTGGAATCATTATTCGCATCCGACGGAAGCCAAACATGGGGCATCTT--------------AAGA-------ATAACAAT-GTT--TTACGGAAGTAATTTGCCTTC--AAG-TACCTCATCATTTTTGTCACATGCGCCCTCATGGACCGTGAGTATATCAACAATAGCCAGCCTGACAACCCGCAATAAATGTCATTGATAACATCGTAGAGTAGATAGAACACCTA
i cb4.chrX              I 1332 C 0
s caeRem4.Crem_Contig0   2359961 308 -  4500979 ------aaatttttttctttctagcAGGGCGTTCCACAAGTTGGTACTCTTCTGtttgatgtatttttgttCCCATCGATATTTGTGGAAGATGCAAATTGTTGTTCTGGAGGAATCATTATTCTCATTCGTCGGAATCCAAACATtggacatctg--------------aaaa-------atactatt-ttcaattttggaagtAATATTTCGGA--AGGATACCGTAACATTTTAGTCACATGCGCTCGCATGGAACGCGAGTATATCAACAATAACCATCCAGACAGTCCACAATAAATGTCATTGATAACATCGTAGAGAAGATAGAACACCTG
i caeRem4.Crem_Contig0  I 8 I 20
s caeSp111.Scaffold626    202863 302 -  1189296 ----------TTTGCATGTACTAACAAGGAGTTCCACATGTTGGAACCCTTCTATTCGACGTATTCTTGTTTCCATCTACATTTGTTGACGATGCGAATTGCTGTTCCGGCGGTATCATGATTCTCATTCGACGGAAACCAAACATTGGACAtctt--------------aaaa-------acaaaatcatctttttttggaagtgaaTTCACT----ATA-TACCGTATCATTTTTGTCACATGCGCTCTCATGGATCGTGAATATATCAACAATAACCAGCCAGATAGACCACAGTAAATGTCATTGATAACGTCATATAGTAGATAAAAAACCTG
i caeSp111.Scaffold626  I 7 I 26
s caePb3.Scfld02_0       3900708 306 +  4147112 ------aactttt---tgttttaacaAGGTGTTCCACACGTAGGAACCCTTctatttgaagtatttttgtgTCCATCTGCATTAGTGGATGATGCGAATTGTTGTTCAGGTGGTATCATGATTCTCATTCGACGGAAACCAAACATtggacatctg--------------aaaa-------taacaatt-tgCGTCTCAGGAAGTAAAAACACTTCCAAAA-TACCGAATCATTTTTGTCACATGCGCTCTCATGGATCTTGAGTATATCAATAATAACCAGCCAGACAGGCCACAATAAATGTCGTTGATAACATCGTAGAGTAGATAAAAGACCTA
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213    18018 314 -   720316 AAAATACACAATTAATACTTCTAACAAGGTGTTCCACATGTAGTAACTCTACGATTCGACGTATTTTTGTTGCCCTCCAGATTTGTGGCTGATGAAAACTGCTGCTCAGCCGGAATCAGCACTCTTATCCTCCGGATTCCAAGCATTGGACATCTGTAATAAAAAGCGGTAAAA-------GAAATATT-GTCAACTAACAAA---------------ACA-TACTTTATCATCCTCGTCACATGCGTTCTCATTGATCGAGAATATATCAATAATAACCAGCCGGATAGTCCACAGTATAAATCATTGATGACATCGTATAGAAGataaaaaacctg
i caeJap4.Scaffold18213 C 0 C 0

a score=-787.000000
s ce10.chrX              5643175  6 + 17718866 AAAT-----TA
s cb4.chrX              10946186 11 + 21540570 TAATAGCTATC
i cb4.chrX              C 0 I 6
s caePb3.Scfld02_0       3901014  6 +  4147112 CAAT-----TC
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18213    18332  6 -   720316 aaaa-----ta
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    203165 26 -  1189296 I
e caeRem4.Crem_Contig0   2360269 20 -  4500979 I

a score=63.000000
s ce10.chrX              5643181 15 + 17718866 AAAAAAAAACACTGA
s cb4.chrX              10946203 14 + 21540570 AAGGTCAAAAACTG-
i cb4.chrX              I 6 C 0
s caeJap4.Scaffold18213    18338 14 -   720316 aAGGCAAAAACTTC-
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3901020 16 +  4147112 I
e caeSp111.Scaffold626    203165 26 -  1189296 I
e caeRem4.Crem_Contig0   2360269 20 -  4500979 I

a score=-1289.000000
s ce10.chrX              5643196  5 + 17718866 AGTTA--------
s caeRem4.Crem_Contig0   2360289  5 -  4500979 ACTTT--------
i caeRem4.Crem_Contig0  I 20 C 0
s caeJap4.Scaffold18213    18352 13 -   720316 CGTTCCCGTCATA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3901020 16 +  4147112 I
e cb4.chrX              10946217  0 + 21540570 C
e caeSp111.Scaffold626    203165 26 -  1189296 I

a score=1044.000000
s ce10.chrX              5643201 6 + 17718866 ATCAAT
s caeRem4.Crem_Contig0   2360294 6 -  4500979 TTCGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3901036 6 +  4147112 ATCAAC
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold18213    18365 6 -   720316 CTCAAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10946217 0 + 21540570 C
e caeSp111.Scaffold626    203165 26 -  1189296 I

a score=270114.000000
s ce10.chrX              5643207 370 + 17718866 ------------ACTTGAAAAATTACTCACCCTCGTAGGAACACTTGTGTTGATTCCAAAAACGTAGATCACATAACAATAATATATAATTTCAGCAACACACGTCAATGCAGCAACAATGTTCAAATTATATTCCTGTCTTTGTTTATCATTCATCACTTTTTGATTAAGATGTGGCTGCGTTGTTAGTCGCTGAAA----TAGTGTACTTTTTATATTGAAGTCAATAA---TGTTT-----ATACGCACCACTTTGTATTTAGTTCGAAATGCAATAACCATTGTTGCATTGATCAACATAATAGATGCTACAAATATTGTTTCTATGACATACGCAGACATGAAGAATCCTCGACGGAAATCTTTATTGTAGAATTGAATGTAGATTCTG
s cb4.chrX              10946217 367 + 21540570 ------------TCCTCG-----TCCCCACCCGTGTTGGAACACTCGTATTGATTCCAAATACGTAGATAACATAGCAGTAATAAACGATTTCTGCGACACATGTCAAACCAGCCACAATGTTGAGGTTGTATTCCTGTCTTTGTTTTTCACTCATCACTTTTTGGTTCAGATGTGGTTGTGTTGATAGGcgctggaa----aaaagaaa-caggatATTAAAGTTCAGAA---TGTGT--TGTTGACGAACCACTTTGTATTTACTTCTGAATGCAATCACCATTGTTACATTAATGATCATAATGCATGCaacaaaaatagtttcaataACATATGCCGACATGAAGAATCCTcgtcgaaaattttgatttttatattggatgtagattctg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2360300 367 -  4500979 ------------TCTTCGACAAATACCAACCCTGGTAGGAACACTTGTGTTGATTCCAAATACGTAGATAACATAACAATAATATACAATTTCTGCGACACACGTTAAACCAGCCACTATATTAAGATTATATTCTTGtctttgtttttcactcaTCACTTTTTGGTTTAGATGTGGTTGTGTTGACAGACGCTGAAA----TGAAGAA--------TTCGTGGTTCAGAA---TGTTTTCTGTTGACAAACCACTCTGTATTTAGTTCTGAAGGCGATGACCATTGTGGCATTAATGACCATAATAGATGcaacaaaaatagtttctaTGACATAGGCAGACATGAAGAATCCTCTTCgaaaatctttgttttcaaattgaatgtaGATTCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203191 367 -  1189296 ------------CCTTTAAATAGAACTAACCCTAGTGGGAACGCTTGTGTTGATTCCAAACACATAAATCACATAACAATAATAGACTATTTCAGCGACACATGTCAAACCAGCAACTATATTCAAGTTATATTCTtgtctttgtttttcactcATCACTTTTTGGTTCAAGTGTGGCTGTGTTGTTAATCTCTGAAACATACACAAAA---------TAATAGTTTGTA----TCTAT--TTCTTACAAACCACTTTGTATTTAGTTCTGAATGCAATGACCATCGTGGCATTAATGACCATTATCAATGCAACAAAAATAGTCTCAATGACGTAGGCCGACATGAAGAAACCTCTTCGgaaatctttattttcaaactgaaTGTAGATTctg
i caeSp111.Scaffold626  I 26 C 0
s caePb3.Scfld02_0       3901042 369 +  4147112 ------------GGTATGAAATCTACCAACCCGAGTAGGAACACTTGTATTAATGCCAAATACGTATATCACATAACAGTAATAAACAATTTCTGCGACACAAGTCAAACCAGCAACTATATTGAGATTGTATTCTtgtctttgtttttcactcatcactttttgattcaagTGTGGCTGTGTTGTTAGTCTCTGAAACTTGAATAGAA----------AATAGTTTGCAGG-TTGTTT--TCTTTACAAACCACTCTGTATTTAGTTCGGAATGCAATCACCATTGTGGCATTTATGATCATTATCAACGCTACGAAAATAGTTTCGATAACATAGGCAGACATGAAGAAACCTCTTCGGAAGTCTTTGTTGTAGAATTGTATATAGATTCTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    18371 378 -   720316 GATTAATAAATAACTTCAAA------TTACCCGTGTGGGAACACTTGTGTTGATACCAAACACGTAGATTACGTACAGATAATATACAATTTCAGCCACACATGTCAGAACGGCGACTATTGTTAAATTGTATTCTTGTCTCTGTTTTTCGTTCATCACCTTTTGATTCAGTTGAGTTTGCGACGCCATTCTCTGAAA----AATGTAG----TTATCACATGATCCATGAGCTTCTAT--TTGTTTCGTACCATTCTATACTTCGTTCTAAAAGCGATAACCATTGTTAAGTTGATAATCATTATCAGCGCAACGAATATTGTTTCTAGTACGTATGCAGCCATAAAGAACCGAccgcgaaattctttgttgtaaaattgcaCATAGAATCTG
i caeJap4.Scaffold18213 C 0 I 29

a score=623.000000
s ce10.chrX              5643577 2 + 17718866 AA
s cb4.chrX              10946584 2 + 21540570 aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2360667 2 -  4500979 CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203558 2 -  1189296 ga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901411 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 37
e caeJap4.Scaffold18213    18749 29 -   720316 I

a score=546.000000
s ce10.chrX              5643579 1 + 17718866 A
s cb4.chrX              10946586 1 + 21540570 a
i cb4.chrX              C 0 I 42
s caeRem4.Crem_Contig0   2360669 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203560 1 -  1189296 a
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e caeJap4.Scaffold18213    18749 29 -   720316 I

a score=-1078.000000
s ce10.chrX              5643580 15 + 17718866 TATTAAATGAAAAAT------
s caeRem4.Crem_Contig0   2360670 15 -  4500979 ------AAGTGAATTAGAGAT
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626    203561 10 -  1189296 -----caagaaaaat------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e caeJap4.Scaffold18213    18749 29 -   720316 I
e cb4.chrX              10946587 42 + 21540570 I

a score=100.000000
s ce10.chrX              5643595 1 + 17718866 C
s caeSp111.Scaffold626    203571 1 -  1189296 c
i caeSp111.Scaffold626  C 0 I 20
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e caeJap4.Scaffold18213    18749 29 -   720316 I
e cb4.chrX              10946587 42 + 21540570 I
e caeRem4.Crem_Contig0   2360685 19 -  4500979 I

a score=0.000000
s ce10.chrX              5643596 567 + 17718866  
e caePb3.Scfld02_0       3901413  37 +  4147112 I
e caeJap4.Scaffold18213    18749  29 -   720316 I
e cb4.chrX              10946587  42 + 21540570 I
e caeSp111.Scaffold626    203572  20 -  1189296 I
e caeRem4.Crem_Contig0   2360685  19 -  4500979 I

a score=100.000000
s ce10.chrX              5644163 1 + 17718866 C
s caeJap4.Scaffold18213    18778 1 -   720316 C
i caeJap4.Scaffold18213 I 29 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e cb4.chrX              10946587 42 + 21540570 I
e caeSp111.Scaffold626    203572 20 -  1189296 I
e caeRem4.Crem_Contig0   2360685 19 -  4500979 I

a score=649.000000
s ce10.chrX              5644164 4 + 17718866 CCTG
s caeSp111.Scaffold626    203592 4 -  1189296 CCTG
i caeSp111.Scaffold626  I 20 C 0
s caeJap4.Scaffold18213    18779 4 -   720316 TTTG
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e cb4.chrX              10946587 42 + 21540570 I
e caeRem4.Crem_Contig0   2360685 19 -  4500979 I

a score=160.000000
s ce10.chrX              5644168 7 + 17718866 ATTCCAG
s caeRem4.Crem_Contig0   2360704 7 -  4500979 ATTCTAT
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold626    203596 4 -  1189296 ATTC---
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18213    18783 7 -   720316 ATTATAA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I
e cb4.chrX              10946587 42 + 21540570 I

a score=-543.000000
s ce10.chrX              5644175 3 + 17718866 TCT
s cb4.chrX              10946629 1 + 21540570 --T
i cb4.chrX              I 42 I 2
s caeRem4.Crem_Contig0   2360711 1 -  4500979 --A
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    203600 1 -  1189296 --T
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18213    18790 3 -   720316 AAT
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3901413 37 +  4147112 I

a score=108278.000000
s ce10.chrX              5644178 118 + 17718866 TACCCATTTCTTTCAAACTTCCAATAAAAATTTTGTGTTATCAAACTCGAACCAATGCAAAGCCCAACTCCTAGCTGGAACACGTGTATCAGAGAAATGTACTTGCTGTTCCAAATCT
s cb4.chrX              10946632 118 + 21540570 TACCCATTTCGTTCATACTTCCAGTAGAAGTTCTGAGTTATAAGACTTGATCCAATGCAGAGGCCTATTCCCAGTTGAAACACGTGCACCAACCAAATGAACTTACTGTTCCAAATCT
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2360714 118 -  4500979 AACCCATtcctttcaaatttccagtagaatttttgagttatcaaGCTTGAACCAATGCAAAGGCCAACTCCCAATTGAAATATATGAATCATCGAAATAAATTTGCTGTTCCAAATCT
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    203601 118 -  1189296 CACCCATTCCTCTCGAACTTCCAATAGAAACTTTGAGTTATCAAACTTGATCCAATGCACAAACCAACTCCCAATTGGAAAACGTGGATCAACGAAATGAACTTGTTATTCCAAatct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901450 118 +  4147112 TACCCATTTCTCTCGAACTTCCAATAAAAGCTTTGTGTTATCAAACTTGATCCAATACAAAGCCCAACACCCAATTGGAACACATGAATCAACGATAtgaatttactgttccaaatct
i caePb3.Scfld02_0      I 37 C 0
s caeJap4.Scaffold18213    18793 118 -   720316 TACCCATTTCTCTCGTATTTCCAATAAAATTTCTGAGGGATTAGACATGAGCCAATACAAAATCCAATTCCtaattgaaaaatgtgaattagCGAGATATACTTATTGTTCCAAATCT
i caeJap4.Scaffold18213 C 0 I 31

a score=-9839.000000
s ce10.chrX              5644296 41 + 17718866 -TAAATCAACA-------------TTATTATTATAAAATCTCTTGTGTAAAAT-----------TC
s cb4.chrX              10946750 63 + 21540570 -AAAACTAACATCACTGTATGGTCTGTCAGATATAAGATTGAAGATCAACAAT--AGAACGTATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2360832 32 -  4500979 -AAAACCAACA---------------------------------ATTATCAGTTCAGATCCGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203719 33 -  1189296 ggaaaagaaaa----------------gagagactCGTTCGC------AAAGT-----------TC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901568 36 +  4147112 -aaaatgaaaa----------------ttgatataag-----------AAAGT--TGAGCCATCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    18911 31 -   720316 I

a score=171364.000000
s ce10.chrX              5644337 176 + 17718866 AAT-ATCCC-ACGTACTTGCTTATGTTTGATTGGGAGGCAAACAGCGGTGGCCCGATTAAGAGCCAGTGCAACAACAGTACAACCCTGAATCCCTCTAGCAGTCCATGCAATCATAAGATACATTTGCCCGACAAACGTGCCCATGGATAAATAGAAATCGCGGAAATATCTGAAATT
s cb4.chrX              10946813 177 + 21540570 AAA-GTCCCGACGTACTTGCTTATGTTTGATAGGAAGGCAAACAGCGGTGGCCCGATTGAGAGCAAGGGCAACGACAGTGCATCCCTGAATCCCTCGGGCGGTCCACGCAATCATCAGATACATTTGACCGACGAACGTGCCCATGGATAAATAGAAATCTtggaaatatctgaaatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2360864 176 -  4500979 AAA-ATCAT-ACATACTTGCTTATGTTTGATTGGAAGACAAACAGCGGTGGCACGATTGAGCGCAAGGGCAACTACAGTGCATCCCTGGATGCCTCGAGCAGTCCATGCAATCATGAGATACATTTGACCGACGAACGTGCCCATGGATAAATAGAAATCACGAAACCATCTGAAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203752 176 -  1189296 ATA-GTCCC-ACGTACTTGTTTATGTTTAATCGGAAGGCAAACAGCGGTGGCCCGATTGAGTGCTAGGGCAACCACAGTACACCCTTGAATCCCTCGTGCAGTCCATGCAATCATAAGATACATTTGGCCAACGAACGTGCCCATGGATAAATAGAAATCGCGAAACCATCTGAAATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901604 177 +  4147112 ATAGGGCTC-ACGTACTTGCTTATGTTTGATCGGAAGACAAACAGCGGTAGCTCGATTAAGTGCTAATGCCACCACAGTACACCCCTGGATGCCTCTTGCGGTCCATGCAATCATGAGATACATTTGACCGACGAACGTGCCCATGGATAAATAGAAATCTTGAAaccatctgaaatt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    18942 176 -   720316 AAG-ATCAC-ACGTACTTGTTTGTGTTTAATTGGAAGACAAACAGCGGTTGCTCGATTTAACGCAAGGGCAACCACAGTGCATCCTTGAATACATCGCGCCGACCAAGCAATCATCAAATACAACTTACCGACGAGAGTTCCCATGGACAGGTAAACAACTCCAAACCAGCTATAATT
i caeJap4.Scaffold18213 I 31 I 40

a score=6719.000000
s ce10.chrX              5644513  88 + 17718866 TGAGACAG-------------ACGTCAAAATAAGAAAG--------------AGAAAGCT-ATAA-----CAAAAAGCGATATTTGTGGA-CGCATCTTTTAATC----TCCCCTTCTCATTTTGT
s cb4.chrX              10946990 100 + 21540570 tgagatgt--gttg-----gaacataaaaaataagaaggaaGCGC-------AGAAAGAAGatataaaa-tgaaaatagcTATATTGAGAGCTGATCTCTTGATCTGTTTGCTTT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2361040  82 -  4500979 TGAGACAT-----------CAACCCataaaacgaagaaaaa-----------agaaagca-atAT-----CGAGAAAAGATATATTTGGA-TTAATCTTTTGATC----TCCCTC-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    203928  79 -  1189296 GGAGACGT-----------GAActcataaaaaag-aata-------------agaaagaa-atataagaatagaaatagatataTGTAGA-TTGACCCTTTGATC----T----------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901781 107 +  4147112 tgagacATCGGTCGTCAACTAACccataaaaaagaaataagaagcaaaaaatagaaagca-atatatga--aagaagagatatatGTGGA-GTGATCCTTTaatc----tctcca-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    19118  40 -   720316 I

a score=93686.000000
s ce10.chrX              5644601 112 + 17718866 ATCTTGTTCGCTCACCCTTTTGCAGGAAACACACATCCAAAATAATTGTTCACCAGGCTTATGACATCAATGATGATTCCAATTGTGAATATTTGATAAAACATTCCtaaat-
s cb4.chrX              10947090 105 + 21540570 ------GTCACGTACCCTTTTGCCGGGAACACACATCCGAAATAATTATTGACCAAACTGAAGACATCTACTATGATTCCAACGGTGAAGATTTGGTAAAACATTCCTGGA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2361122 105 -  4500979 ------TTCACTCACCCTTTCGCTGGAAATACACAACCAAAATAATTGTTCACTAAACTGAAGACATCTACAATGATACCAACTGTGAAGATCTGATAGAACATTCCTGAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    204007 105 -  1189296 ------TATGCTCACCCCTTTGCTGGAAACACACATCCGAAGTAATTGTTCATCAAACTGATCACATCTACAATGATTCCAACAGTGAATATTTGATAGAACATCcctgaa--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901888 105 +  4147112 ------ttttctcaccCTTTTGCTGGGAACACACATCCGAAGTAATTGTTTACCAAACTGATGACGTCTACGGTTATTCCAACAGTGAAGATTTGATAGAACATTCCTGGA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    19158 112 -   720316 atttttttcggttacCCCTTCGCTGGAAATACACATCCTAAGTAGTTGTTCATTAGACTTATCACGTCCACAGTGATTCCGATTGTAAAAATTTGGTAGAACATTCCTAAA-T
i caeJap4.Scaffold18213 I 40 I 27

a score=-6063.000000
s ce10.chrX              5644713 32 + 17718866 taaaaaaaaaatcataaaactttttaaatatC
s cb4.chrX              10947195 31 + 21540570 -AAACTAGTTTATATTTGTATTCTAGAAGTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2361227 31 -  4500979 -ACCAAAATCATTGTCAAAATCCTGAAATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    204112 29 -  1189296 -acaaaa--tgttAGTTCGATTCTCCTTGCTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3901993 28 +  4147112 -AATGAA--tattattttgattgaaaata-ta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    19270 27 -   720316 I

a score=111435.000000
s ce10.chrX              5644745 180 + 17718866 -TTTACAAC--TAACCTTTATAAACTGTGTTTCTCAAAGTGACTAGTATAAGTATTTCAACAAAATACAAAAGGATTGTCACAAAGGAGCCCAACATGAAAACAGTGCTCACTACGCTTTCCAGTGGATCGAACCATTCTGGCAATGTTGCATTTGAGGCCATCTGTGGTCTGAAA-GTTTGAA
s cb4.chrX              10947226 175 + 21540570 -TTGGC------TACCTTTATATACAGTATTTCTAAGTGTAACAAGTATCAAGACTTCCATAATGTACAGAATAATAGTTACAAATGAACCCATCATGAAGACAGTGCTCACAATACTCTCCAATGGGTCGAACCATTCCGGAAGCGTTGCGTTGGAAGCCATCGGAGgcctaaaaaa--taaa
i cb4.chrX              C 0 I 13
s caeRem4.Crem_Contig0   2361258 173 -  4500979 -GTTAT------TACCTTTATAAACCGAGTTTCTCAGAGTAAACAATATCAGTATTTCCATAAAATAAAGGAGAATAGTCACAAATGATCCCAACATGAAAACTGTGCTTACTACACTTTCAAGTGGATCGAACCATTCTGGCAGTGTTGCGTTGGAGGCCATAGGTGGTCTGAAAA----CAA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    204141 175 -  1189296 -ATTAAAA----TACCTTTGTACACCGAGTTTCTCAATGTGACAAGAATCAGTATTTCCATAAAATACAAGATTATTGTGACAAATGATCCGAGCATGAATACAGTGCTCACAACACTTTCCAAAGGGTCAAACCACTCGGGAAGTGTCGCATTTGATGCCATCGGAagactgaaa----ttga
i caeSp111.Scaffold626  C 0 I 359
s caePb3.Scfld02_0       3902021 180 +  4147112 -attaaaAC---TACCTTTGTAAACAGTGCCTCTCAAGGTGACAAGTATTaaaatttccatgaaataGAGAATGATGGTGACAAATGATCCAAGCATAAAAACGGTGCTCACAATACTTTCCAGAGGATCGAACCATTCTGGAAGTGTTGCATTTGATGCCATAGGGGGTCTGAAAtgttttgg
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213    19297 183 -   720316 ttttcaaacATATACCTTTATAAGTTGATTTTCTGAGAGTGCACAGTAttaaaatttccataaaataaAGCAGAACGGTGAAAAAGGAAGCTATCATAAAAGTATAACTAATCACAGCTTCGATAGGATCAAACCATTCGGGGAGAGTGGCGTTTGCGGCCATGagaggtctgaaa-ttttcaa
i caeJap4.Scaffold18213 I 27 C 0

a score=575.000000
s ce10.chrX              5644925 12 + 17718866 AAACTAGAATAA
s cb4.chrX              10947414 12 + 21540570 agttgagtttca
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2361436 10 -  4500979 --ATAAGTATAA
i caeRem4.Crem_Contig0  I 5 I 359
s caePb3.Scfld02_0       3902204 12 +  4147112 attttggtaTGA
i caePb3.Scfld02_0      I 3 I 5
s caeJap4.Scaffold18213    19480 12 -   720316 aacctttTATAA
i caeJap4.Scaffold18213 C 0 I 844
e caeSp111.Scaffold626    204316 359 -  1189296 I

a score=527.000000
s ce10.chrX              5644937 5 + 17718866 AAATT
s cb4.chrX              10947426 5 + 21540570 aaatt
i cb4.chrX              C 0 I 827
s caePb3.Scfld02_0       3902221 5 +  4147112 ATAGT
i caePb3.Scfld02_0      I 5 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I
e caeSp111.Scaffold626    204316 359 -  1189296 I
e caeRem4.Crem_Contig0   2361446 359 -  4500979 I

a score=502.000000
s ce10.chrX              5644942 255 + 17718866 T-----TGTTCAGCTCGCAGACAGCAAGATAGAAAATATAATCGCTCAA-TTTTCTGAGAACTTTTGAGATGTCTGATTATG------GTTAGAGAATCAGCAATTAGATGAATTGTCTTGCG----TCAAGGAT---------AAACCTCAAA--GTTTAATTATGGTGTTGATAACGTGTGGGTTCTAGGAA------AAACTTGAATTT-GTGAATTTTTCTGTTGAACAATTGATATTCCAGTTTGATTTTCAAACTGAAA---GAAAATTTGCGT--------TATCTGAATAAA
s caePb3.Scfld02_0       3902226 289 +  4147112 TGAGCCGGGTTagatggaaaatggaaaaacggAAGATTGATCAGCtaaacttttctgaatatGCTTGAAATCTATAATTATTCAAGTCGTCACGGTAATTGTAGGTGCTTAGAGTGTTTTGAGCATTTCAAGTATCTAGGAATCAAGCatcaaattgttttgtt-taaaGTT-ATGATTTCTTGATTCCAGTAATTTTCGAAACGTGAAGCTAGAgcggttttttgaagaaattttggtatt----ttcga-----aaagtggaacagaaaaattcaaattatgtATATAtctgaagaag
i caePb3.Scfld02_0      C 0 I 71
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10947431 827 + 21540570 I
e caeSp111.Scaffold626    204316 359 -  1189296 I
e caeRem4.Crem_Contig0   2361446 359 -  4500979 I

a score=0.000000
s ce10.chrX              5645197 82 + 17718866 TTCTAATTTTAAATTTACATAGCACATTACTACAATATGGTACTAAATAGAGTCATAATAATTCAAAATGACAGAAACACTC
e caePb3.Scfld02_0       3902515 71 +  4147112 I
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10947431 827 + 21540570 I
e caeSp111.Scaffold626    204316 359 -  1189296 I
e caeRem4.Crem_Contig0   2361446 359 -  4500979 I

a score=-1635.000000
s ce10.chrX              5645279 402 + 17718866 CAAAATTTTCTT-AGATTTTTCAAAAAGTTTTGTGAAATGT-----------GGGCATGTTATGAAAT--------TCAAAGC-ATTACTGGAGGTTCAATTCTTAGGAATGAAACATGt-ggtcgactttcaaaatgat----gagtttcgaaaattgagtataatcaattttttactggggataaaa-----tttcaaactttttttgaaaATAATTAGAACACGCATGAATTGGATTTTCTCAATTTATCTCAAAATTGGtataaaatactaaatatataaattaaatactataacttatgtatataatt-----ttttGAACCTCAATGGCGCTACTCCACGTTTAA--ACTAATTTTAACTTCTTGCACGACAACGAACACCATTTTTATATCTCTTCCAAA---TTTCCATAATCAGATTT--------ACA--------GCCATAATCTTCT
s caePb3.Scfld02_0       3902586 415 +  4147112 TAGTATTTTATTCAGATGATTTCAAGACAAGCGTGAAACGTGCTATATACGAGATCTTTTCATTAAATAGTTCCTCCTAGAGCAAGTTCCGGA--TTCA--TCTTA-----GAACCACGCAGGTTTATCGATAAAACGTTGATAGAATTGGTAAATTTGAGATTTATaaaccttcaa----aaataaaaattagtttcagaGCTCTGTGGAGAAC--TGAGGACAT---CAAATTGTGTGTTTTTA---CAATTAAAATTTCAtgcaaatt--ttaatttgaaaattgcaaatttcAATAGATCTGGCAAGTTCATCGTTTTGAGCTACA-------------ACATTCAGGCACTTGTTGTCATCTCTTATTCTATGGC--------TTCTGTTTTCCCTcactaatatttttcaaaactgatttttttatttaacaGTCCATTTGCTAcaagctttt
i caePb3.Scfld02_0      I 71 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10947431 827 + 21540570 I
e caeSp111.Scaffold626    204316 359 -  1189296 I
e caeRem4.Crem_Contig0   2361446 359 -  4500979 I

a score=-1112.000000
s ce10.chrX              5645681 39 + 17718866 CATTCCTCATTATCTGCTAGTCAATCACAACT-GCATGAC-----
s caeRem4.Crem_Contig0   2361805 34 -  4500979 CATGCCACACTATCTG----------ACCCCT-CAAtgatttctc
i caeRem4.Crem_Contig0  I 359 C 0
s caePb3.Scfld02_0       3903001 29 +  4147112 -ctttttcaatgtctG----------ATATGTATAGTGAC-----
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10947431 827 + 21540570 I
e caeSp111.Scaffold626    204316 359 -  1189296 I

a score=-5925.000000
s ce10.chrX              5645720 36 + 17718866 CCTTTTGATAA----------CATCTT--CGACGGCTATATGCAGACA----
s caeRem4.Crem_Contig0   2361839 29 -  4500979 ---------------------tatttttgcagCATCTGCTT-CGTACATCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    204675 46 -  1189296 CCTCTTAATAACGACTAATCCCAT-----CTGCAGCTGCAT-CGTACAACCG
i caeSp111.Scaffold626  I 359 C 0
s caePb3.Scfld02_0       3903031 40 +  4147112 CCTC-----AACGATAAATCCTATCTATCCTGCAGCTGC-------TGAGGA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10947431 827 + 21540570 I

a score=50019.000000
s ce10.chrX              5645756 212 + 17718866 GAACAAGTTTT----------TGGCCCGACAATACACACCCGTATC-A-----GTC-TTCACGTGAAAT--------GAAGAAAATGC----ACGCGCCT-------GGACAGTGGCATGTGTTAACCAA-------GCCTT-ATCATCTTGTGATCCGGGTCCACAATGATGAGTAGGTGAAGATTGAAATTTGTTGTC--------ATGTTCGTTGAACATT----TACGGGTT--ACAGATAAATATTTGTGAAACTGAACAATGGT
s cb4.chrX              10948258 233 + 21540570 GAACGAGTTTTTATCTCTTCCTTTTGCCTCAG---ACACCCGTATCAAAAACGGTAGTTCACGTGaata--------atatcaattttcacGACGCACGCAATAACAAATCGACTGCGACTGTTGACCA--------GCAAA-ATTATCTTGTGATCCGGGTCCGAAATGATGTGTCA--GAGGAAGGAAACTGTTTGGA------AAGTGTTCGATGAACCGTAGATTTCGGAAT---------AATATTTGTCACGTTGACCATTGGT
i cb4.chrX              I 827 I 153
s caeRem4.Crem_Contig0   2361868 236 -  4500979 GAACAAGTTAT----------TCCTGATGAAG---ACACCCGTATC-AAAACGATA-TTCACGTGAATGCAGTGAATAAACCAATTGC----ACGCGCGC-ATCATAAATCATTTGCCTGTATTGACCATCTCTAGTGTCTA-ATCACCTTGTGATCCGggtc---aat--tttatag--aagaAAAGCAACATTCTATACTGTTGATATGTTCGTTGAACACT---TTCCGGGTT--GAAGTA-AATATTTGGCAAATTGAACATTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    204721 223 -  1189296 AAACACGTTTT----------TGGACATCAAG---ATAGCCGTATC-AAAACTGTC-TTCACGTGAAT---------AAACCAATTGC----ACGCGCGC-ATCATAAATCAAATGCGTGTATCGACTATCTATAG-CCCTGCATCACCTTGTGATCCGAGTTCATAATGATGTACAA--AAGTCTCTGGCTTTGTTATT---------TGTTCGTTGAacatt--atttcagaa---aaagaa-aatatttgtcAAATTGAACATTGAT
i caeSp111.Scaffold626  C 0 I 237
s caePb3.Scfld02_0       3903071 226 +  4147112 GAACAAGTTTT----------TGGTCATCAAG---ACACCCGTATC-AAAACTGTC-TTCACGTGAAT---------AAACCAAATGC----ACGCGGAC-GCCATATATCAAATACATTTGTTGATCGCCCTCTT-CCCTA-ATCACCTTGTGATCCGGGTCCATAATAATGTACAG--TGAGAATTGGCATTGTTGTC--------ATGTTCGAtgaacagt---tttcagaatagaatGAATAATATTTGCCAAATTGAACATTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I

a score=329.000000
s ce10.chrX              5645968 2 + 17718866 GC
s caeRem4.Crem_Contig0   2362104 2 -  4500979 AC
i caeRem4.Crem_Contig0  C 0 I 182
s caePb3.Scfld02_0       3903297 2 +  4147112 AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10948491 153 + 21540570 I
e caeSp111.Scaffold626    204944 237 -  1189296 I

a score=89.000000
s ce10.chrX              5645970 5 + 17718866 AGGAT
s caePb3.Scfld02_0       3903299 5 +  4147112 GAAAT
i caePb3.Scfld02_0      C 0 I 233
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10948491 153 + 21540570 I
e caeSp111.Scaffold626    204944 237 -  1189296 I
e caeRem4.Crem_Contig0   2362106 182 -  4500979 I

a score=0.000000
s ce10.chrX              5645975 822 + 17718866  
e caePb3.Scfld02_0       3903304 233 +  4147112 I
e caeJap4.Scaffold18213    19492 844 -   720316 I
e cb4.chrX              10948491 153 + 21540570 I
e caeSp111.Scaffold626    204944 237 -  1189296 I
e caeRem4.Crem_Contig0   2362106 182 -  4500979 I

a score=741.000000
s ce10.chrX              5646797 44 + 17718866 TTCCTATTCTCGAAAATAATTTCGACAGCGGATCAAAA-CTCAGA
s cb4.chrX              10948644 45 + 21540570 TTCTTCATCTATATATCATTTTCAGTGTTAGATCAAAAACTTGGA
i cb4.chrX              I 153 C 0
e caePb3.Scfld02_0       3903304 233 +  4147112 I
e caeJap4.Scaffold18213    19492 844 -   720316 I
e caeSp111.Scaffold626    204944 237 -  1189296 I
e caeRem4.Crem_Contig0   2362106 182 -  4500979 I

a score=-82.000000
s ce10.chrX              5646841 42 + 17718866 -----ATTGTTTCTAATAATACGTTC--TTC---TCACACAAAATTAACCGC
s cb4.chrX              10948689 44 + 21540570 ATAGTATTGTTTTGGTCAGTGTGTCC--TACGGTCCGCCCACTATT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2362288 40 -  4500979 -----ATTGTTTTGACTATAATGTTCAATACAGACCGCCCATT-TT------
i caeRem4.Crem_Contig0  I 182 C 0
e caePb3.Scfld02_0       3903304 233 +  4147112 I
e caeJap4.Scaffold18213    19492 844 -   720316 I
e caeSp111.Scaffold626    204944 237 -  1189296 I

a score=807.000000
s ce10.chrX              5646883 2 + 17718866 CC
s cb4.chrX              10948733 2 + 21540570 CC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2362328 2 -  4500979 CC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3903537 2 +  4147112 ct
i caePb3.Scfld02_0      I 233 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I
e caeSp111.Scaffold626    204944 237 -  1189296 I

a score=27856.000000
s ce10.chrX              5646885 184 + 17718866 CTTGTTCTGTGACCCGCTGCAAATTCCAGTTGTAATGAAAACAGATCG--ACTGCA-TCCA-CTATAAAAGGCAGGAAGATTGACTGATTCTTTCTGATTCATGAACAACTATCTCTACTTCCTTTT-TTTTATCATTC-------GGTTTATCT----AGCGTTTGCA-AATCTTTTTGATACGACTAATCTAAAGAGTA
s cb4.chrX              10948735 151 + 21540570 CTTGTTCTATGGAC--CCCGAAATTCCAGTTAGAAACAA-----TCAA--CCTGCA-AACGTTTACAAAAGGAGTGAAGATCTAG----------TGATTTgcgaa------------------cat-ttttgatatt------cttccTTATCTCCTCCTTCTCCGCA-AAACGT---GATAGACCACCACTAA-CAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2362330 175 -  4500979 TTTGTTCTATGGAC--CTTAAAATTCCAGTTACAAACAAAATAGACAG--CCTGCAGGATCTCTATATAAGGCAGGCGAATCAAGTGAttctttctgattttcgaa-----------CCTTCCCcct-ttttgctattt---tcctTCCTTATCT----ATTTTCTACAGAAGCAT---GATACGCGTAGACTAAGAAACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    205181 167 -  1189296 cttgttctatGGAC--CCTAAAAATCCAGTTGCAAACAAAATAGACTG--TATGAA-TTCC-CTATAAAAGACCACCGAATCTTATGAATCTTTCTGATTTGCGAAC----------CCTTCCCCCTCCTAAACTATTTTCATCTTCCCTTATCT---TATTCCTAGTG---ACAT--------GTGTAGACT----AACA
i caeSp111.Scaffold626  I 237 C 0
s caePb3.Scfld02_0       3903539 170 +  4147112 tttgttctatGGAC--CCTAAAATTCCTGTTGCAAACAAAACAGACAGTCTCTGCA-CCCCGCTATAAAAGGCAGGCAAATCATGTGGATCTTTCTGATTTGCGAAC----------CCATCCTCCT-CTATACTGCTT--------CCTTATCT---CACTTCCTATG---ACAT---GATACGCGTAGACTAAGAAACA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    19492 844 -   720316 I

a score=603272.000000
s ce10.chrX              5647069 1087 + 17718866  
s cb4.chrX              10948886 1036 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2362505 1022 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    205348 1063 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3903709 1079 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    20336 1058 -   720316  
i caeJap4.Scaffold18213 I 844 I 399

a score=3771.000000
s ce10.chrX              5648156 41 + 17718866 TTCGAAAG------TGAGCCGAGAAATGTCTAG-------AGGGTCCAGTTACT
s cb4.chrX              10949922 51 + 21540570 GGATCCTT---GGAAGAGACAAAAAACATGCGACAAAAGCGGGGTCTAGTTTCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2363527 43 -  4500979 TCATCTTG---AGAAGTGCATGGAAATGTCTA--------GGAATCTGGTTTCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    206411 46 -  1189296 TTGGCTAG-GATGATGCGCCAAAAATTGTCTGA-------GGAGTCTAGTTTCT
i caeSp111.Scaffold626  C 0 I 436
s caePb3.Scfld02_0       3904788 46 +  4147112 CTAGCTAGTAAGGATGCGCTGGAAA-TGTCTAA-------GGAGTCCAGTTACT
i caePb3.Scfld02_0      C 0 I 477
e caeJap4.Scaffold18213    21394 399 -   720316 I

a score=-200.000000
s ce10.chrX              5648197 10 + 17718866 ATTGTGT-GGT
s cb4.chrX              10949973 11 + 21540570 ACTCTACTGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2363570 10 -  4500979 AGTATGA-GAT
i caeRem4.Crem_Contig0  C 0 I 446
e caePb3.Scfld02_0       3904834 477 +  4147112 I
e caeJap4.Scaffold18213    21394 399 -   720316 I
e caeSp111.Scaffold626    206457 436 -  1189296 I

a score=160.000000
s ce10.chrX              5648207 3 + 17718866 CTA
s cb4.chrX              10949984 3 + 21540570 CCA
i cb4.chrX              C 0 I 436
e caePb3.Scfld02_0       3904834 477 +  4147112 I
e caeJap4.Scaffold18213    21394 399 -   720316 I
e caeSp111.Scaffold626    206457 436 -  1189296 I
e caeRem4.Crem_Contig0   2363580 446 -  4500979 I

a score=0.000000
s ce10.chrX              5648210 1070 + 17718866  
e caePb3.Scfld02_0       3904834  477 +  4147112 I
e caeJap4.Scaffold18213    21394  399 -   720316 I
e cb4.chrX              10949987  436 + 21540570 I
e caeSp111.Scaffold626    206457  436 -  1189296 I
e caeRem4.Crem_Contig0   2363580  446 -  4500979 I

a score=120.000000
s ce10.chrX              5649280 4 + 17718866 TCAA
s caeRem4.Crem_Contig0   2364026 4 -  4500979 TTAG
i caeRem4.Crem_Contig0  I 446 C 0
e caePb3.Scfld02_0       3904834 477 +  4147112 I
e caeJap4.Scaffold18213    21394 399 -   720316 I
e cb4.chrX              10949987 436 + 21540570 I
e caeSp111.Scaffold626    206457 436 -  1189296 I

a score=300.000000
s ce10.chrX              5649284 1 + 17718866 G
s caeRem4.Crem_Contig0   2364030 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3905311 1 +  4147112 G
i caePb3.Scfld02_0      I 477 C 0
e caeJap4.Scaffold18213    21394 399 -   720316 I
e cb4.chrX              10949987 436 + 21540570 I
e caeSp111.Scaffold626    206457 436 -  1189296 I

a score=-2475.000000
s ce10.chrX              5649285 38 + 17718866 AAACTA-------------ATCAAATTTATCTAAAACAATTGTCTAAAATC
s caeRem4.Crem_Contig0   2364031 38 -  4500979 AAACTCTTCTACTACGAGTAATACAActataaagaaaa-------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    206893 27 -  1189296 agACTA-------------AATAAACttatcaagagaaaa-----------
i caeSp111.Scaffold626  I 436 C 0
s caePb3.Scfld02_0       3905312 27 +  4147112 AAATCA-------------ATTAGATtaggaaatatgaaa-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    21394 399 -   720316 I
e cb4.chrX              10949987 436 + 21540570 I

a score=-1841.000000
s ce10.chrX              5649323 29 + 17718866 AATTGTAAA-GCCCCATGAT-CTAGTAG--AGC-----
s cb4.chrX              10950423 31 + 21540570 aatcatAGG-ATCACAAGAC---ATCGA--AGCaaaa-
i cb4.chrX              I 436 C 0
s caeRem4.Crem_Contig0   2364069 33 -  4500979 aagtctaGA-ATCACATGAT-TGAGTAA--AACGAAG-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    206920 37 -  1189296 aacccCCGAGATCATATGAT-TGAGTGATATACGAAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3905339 27 +  4147112 aactaaaga-atCACATGTTCTGAGGGA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    21394 399 -   720316 I

a score=205501.000000
s ce10.chrX              5649352 237 + 17718866 AAAAGTGAATTACAGGTGCGGGAGACGCTCTTTGGGGAGGCGATCAATTGCGCACTCTGTTCATGGGCGTGGGAACCCGAACCGACGTAAGAGCACTTCGCGATGTTGCAAATAAACTCGATGATGGAACAAACTGGAAAGTGATTGGATGTCGACTCGTCGATCCAAGGTTTGTTTATTAGA---------------------AAAGCA-----AAAATTTTAAAAACACTT---TGCT----TTTGATCTTTCA-------------------------CTTTTCTTCAAAAG
s cb4.chrX              10950454 251 + 21540570 -aaaCTGAGTTACAGGTGCGGGTGATGCTCTCTGGGGTGGTGATCAATTGCGCACTCTGTTCATGGGCGTGGGAACCCGAACCGACGTAAGAGCACTTCGCGATGTTGCAAATAAACTCGACGATGGCACCAACTGGAAAGTGATTGGGTGTCGACTCGTTGATCCGAGGTTTGTTTATTAGACAAGAAATGAGAAGACAGCTGAAGACT---------CTCTGAAGATTCCT-ATCTTC----TTAAATAATTCA-----------------------------CTTTCGGAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2364102 228 -  4500979 TAAAGTGAATTACAGGTGCGGGTGATGCTCTCTGGGGAGGAGATCAATTGCGCACTCTGTTCATGGGCGTGGGAACTCGGACCGACGTAAGAGCACTTCGCGATGTTGCAAATAAACTCGACGACGGCACCAACTGGAAAGTGATCGGGTGTCGACTCGTCGATCCAAGGTTtgtttattaga---------------------aaaaat---------ctttgaaaattcttcaacTT--------GATCTTTCA-----------------------------CTTCCGCAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    206957 238 -  1189296 AAAACTGAATTACAGGTGCGGGTGATGCTCTCTGGGGAGGCGATCAAATGCGCACTCTGTTCATGGGCGTGGGAACCCGAACCGACGTGAGAGCACTTCGCGATGTTGCAAATAAACTCGACGACGGCACCAATTGGAAAGTGATCGGGTGTCGACTAGTCGATCCAAGGTTTGTTTATTAAA---------------------AAGtca----------ttcgaaaactttt---ttttctcgtctcATCTTTCATATCG-----------------------CTCTTCAAAAG
i caeSp111.Scaffold626  C 0 I 87
s caePb3.Scfld02_0       3905366 260 +  4147112 AAAAGCGAATTACAGGTGCGGGTGATGCTCTATGGGGAGGCGATCAATTGCGCACTCTGTTCATGGGCGTGGGAACCCGAACCGACGTAAGAGCTCTTCGCGATGTTGCAAATAAACTCGACGATGGCACTAACTGGAAAGTCATCGGGTGTCGACTAGTCGATCCAAGGTTTGTTTATTAta---------------------aagaag------aatttttgaagatttct---ttt-----CCGCAAATTTCAAAGAGAGCATAAGAACATAATAaaaattcctttcaaaaa
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213    21793 238 -   720316 aaaattgGATTACAGGTGCGGGTGATGCTCTTTGGGGAGGCGATCGAATGCGCACTTTGTTCATGGGTGTGGGAACTCGAACCGACGTAAGAGCACTTCGCGATGTTGCAAATAAACTCGACGATGGCACGAATTGGAAAGTGATTGGCTGCCGGCTCGTTGATCCAAGGTTtgtgaatgaaa---------------------aaaaaacgagagaaaataaacaaacatta---attt----ttttattttttc-----------------------------tgtctgCCAG
i caeJap4.Scaffold18213 I 399 C 0

a score=-289.000000
s ce10.chrX              5649589 4 + 17718866 CAAT
s cb4.chrX              10950705 2 + 21540570 --AA
i cb4.chrX              C 0 I 96
s caeRem4.Crem_Contig0   2364330 2 -  4500979 --AA
i caeRem4.Crem_Contig0  C 0 I 22
s caePb3.Scfld02_0       3905627 4 +  4147112 tcat
i caePb3.Scfld02_0      I 1 I 4
s caeJap4.Scaffold18213    22031 4 -   720316 TTAG
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    207195 87 -  1189296 I

a score=-3109.000000
s ce10.chrX              5649593 39 + 17718866 TTCCTCCGTATTCTTTTTTCCGATAACTTCACTTTACAT
s caeRem4.Crem_Contig0   2364354 32 -  4500979 ACCCTAGACATTCG-------CAGAAGTAGAGTGTGTTG
i caeRem4.Crem_Contig0  I 22 I 21
s caePb3.Scfld02_0       3905635 32 +  4147112 GCCCTAGACATTCG-------GAGAAGTTGTGGTTATTA
i caePb3.Scfld02_0      I 4 I 36
s caeJap4.Scaffold18213    22035 29 -   720316 ---TTAGTTAGTAA-------TTTACTTAAACTCCGATA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10950707 96 + 21540570 I
e caeSp111.Scaffold626    207195 87 -  1189296 I

a score=0.000000
s ce10.chrX              5649632 22 + 17718866 GATATTTAATTATGTCGGCACT
e caePb3.Scfld02_0       3905667 36 +  4147112 I
e caeJap4.Scaffold18213    22064  0 -   720316 C
e cb4.chrX              10950707 96 + 21540570 I
e caeSp111.Scaffold626    207195 87 -  1189296 I
e caeRem4.Crem_Contig0   2364386 21 -  4500979 I

a score=329838.000000
s ce10.chrX              5649654 475 + 17718866  
s cb4.chrX              10950803 483 + 21540570  
i cb4.chrX              I 96 C 0
s caeRem4.Crem_Contig0   2364407 458 -  4500979  
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold626    207282 462 -  1189296  
i caeSp111.Scaffold626  I 87 I 98
s caePb3.Scfld02_0       3905703 472 +  4147112  
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18213    22064 529 -   720316  
i caeJap4.Scaffold18213 C 0 I 2313

a score=-4912.000000
s ce10.chrX              5650129 22 + 17718866 TAACGTTCTATAGCATTTCTTC---------------
s cb4.chrX              10951286 22 + 21540570 ------------atattttt---aattgtgACTCTTC
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   2364865 25 -  4500979 ------------CTACTTTTTCCACTTGGCATTTTTG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3906175 17 +  4147112 -----------CCTGTTTCTTAACCCTG---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    207744 98 -  1189296 I

a score=1392.000000
s ce10.chrX              5650151 5 + 17718866 ACAAT
s caeRem4.Crem_Contig0   2364890 5 -  4500979 ACAAT
i caeRem4.Crem_Contig0  C 0 I 148
s caePb3.Scfld02_0       3906192 5 +  4147112 acaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10951308 31 + 21540570 I
e caeSp111.Scaffold626    207744 98 -  1189296 I

a score=-456.000000
s ce10.chrX              5650156 5 + 17718866 T---ATTC-
s caePb3.Scfld02_0       3906197 9 +  4147112 tttcattct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10951308 31 + 21540570 I
e caeSp111.Scaffold626    207744 98 -  1189296 I
e caeRem4.Crem_Contig0   2364895 148 -  4500979 I

a score=2486.000000
s ce10.chrX              5650161 10 + 17718866 AATAAAATTT
s cb4.chrX              10951339 10 + 21540570 aataaaattt
i cb4.chrX              I 31 C 0
s caePb3.Scfld02_0       3906206 10 +  4147112 aataaagttt
i caePb3.Scfld02_0      C 0 I 58
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    207744 98 -  1189296 I
e caeRem4.Crem_Contig0   2364895 148 -  4500979 I

a score=785.000000
s ce10.chrX              5650171 130 + 17718866 GAAAACCAAAAAGTTTGCCAAAGACTTTTAGACTCTTCAAAATTTTCAGTCAAAGTTTTGGC----CAGGACTTTCTAAGAAATTTCGATTATTGATACAAGTCCGAACTACAAGAATGTTGAAATAAAGATAA
s cb4.chrX              10951349 114 + 21540570 caaaaacaaaagtgttgtaaatg----------ttatcaaaattt--aggtaaaaCCAGGGATATGCAGCACGGAATTAGGAATTTCGCCCAGaaaaac--------tcgataaaaaagttgaaaaaaaggtgA
i cb4.chrX              C 0 I 697
e caePb3.Scfld02_0       3906216  58 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    207744  98 -  1189296 I
e caeRem4.Crem_Contig0   2364895 148 -  4500979 I

a score=0.000000
s ce10.chrX              5650301 1252 + 17718866  
e caePb3.Scfld02_0       3906216   58 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10951463  697 + 21540570 I
e caeSp111.Scaffold626    207744   98 -  1189296 I
e caeRem4.Crem_Contig0   2364895  148 -  4500979 I

a score=91.000000
s ce10.chrX              5651553 1 + 17718866 T
s cb4.chrX              10952160 1 + 21540570 t
i cb4.chrX              I 697 C 0
e caePb3.Scfld02_0       3906216 58 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    207744 98 -  1189296 I
e caeRem4.Crem_Contig0   2364895 148 -  4500979 I

a score=38.000000
s ce10.chrX              5651554 1 + 17718866 G
s cb4.chrX              10952161 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    207842 1 -  1189296 g
i caeSp111.Scaffold626  I 98 C 0
e caePb3.Scfld02_0       3906216 58 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeRem4.Crem_Contig0   2364895 148 -  4500979 I

a score=1533.000000
s ce10.chrX              5651555 4 + 17718866 AGCA
s cb4.chrX              10952162 4 + 21540570 agcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2365043 4 -  4500979 agca
i caeRem4.Crem_Contig0  I 148 C 0
s caeSp111.Scaffold626    207843 4 -  1189296 aaca
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3906216 58 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=21428.000000
s ce10.chrX              5651559 268 + 17718866 AGTAAAAAAGCT---ACGAAA------AAAAAAACAATTAA--ACATCTGGAGAGAATCAAAC-----CGAGCC------ATTCGGAA-ATGAGAAAAAAA----------------------------------CGAGAATAATG-AAAAGAACGGATTTTCGATTTTTTAAGCGAATAGAAAA----------CAGACTTCCTCGA---CCCAAAAAGT-TCACTTTTCTTAAC--TGGA----CGGCTAAAA---CTCCTACA-TTTCCGGAAATCCGATA--TGCATCTCCTATTCTGTA--ATTCAACACTACAATTATCAGA---ATTAGAAAGTTCCCTTGTG----TATCAAG----------------------
s cb4.chrX              10952166 327 + 21540570 aaaaagaaa------gaatac--atcgaaaaaaccaattaa--acatgtggaaaagATTGAACAC---ATAGCTTCCGtcgtttagaa-aaaaaaagagaatgggTGATGTGA---GAGTGCAGAAAAAAGCAATCAAGAA-AAGGAAATGCTCTGGAATT-----CTCTAACGTTCCAGCTGCC---------TTGAACTTCCTTATTTGTTTTAAGAGTGTAGAGCCCCTGATC--CAGT--TCCATTCTGAA---CTCCCACCACATCCGGAAACTTGAtactctttttgctttttctctATTACAAAACGCTGAAAGGTTCaa------taaaaagtt------tc----tgaaaatgga-acaCTTTTGTGTTTCAGG
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2365047 313 -  4500979 agaaaaaaaatt---gagaac------aaaaaaccaattac--ACATCTGTAATGGATTGAACAC---AATGCAGCTGCGGTTTAgaattaaaaattggaaagagtGATGTGA---GTG----------------CAAGAACAATGAGAACCATTGGATTTTTGACCTCTTCCGTTCCGCAAAAA---------CTAAAGTTCCCTGT---CTTCAAGAGT-TCAACTTTCTTATCGGAGGC--TACATACCAAA---CTCCCACATTTTCCGGAAATCTGATA----tcttccattttctgaa--accaaACACTGGTATTATCAGG---ACtagaaagtt------aa----aaaaaagaaatgaacgTTTATTTATAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    207847 299 -  1189296 --agaaaaaaat---gaaaaagaatcg-aaaaaccaaTTAA--ACATCTGGAAAGGATTGAACACGAAAAGGca------agatgaaa-ttgaaacaggAAACACGAATGGGATGTGCA----------------CACGAATAATGAGAAATCCcagatttttgaactctacagagacaaaaaag--aagaaaaatgaagttctATGT---AGTCGgaagt-tcaattttcttaTC--TGAC--TCCTT---------CTCCCACATTTTCCTGTAACCTGATA----TCTTTCCCTTTCTGTA--ACCAAACACGGCTATTATCAGA---ACTAGAGTGTT------TGTTCTGAACGAAAGT-------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3906274 313 +  4147112 agcaaaaaaaattcaaaaaaaaaatcgaaaaaaccaattaaCCACATCTGGGAAGGATTGAACAC---AAAgga------agatgaaa-ttgaaacaggaaagacTGATGGGATGTGTG----------------CACGAATGATG-GGAATCATagatttttgaccttttcagaacagaaaaagcaaagaaaaatgaacttcctTGT---ATGGaagagt-tcaatttttttatc--tgtctttcctttccaaaaaactcccACATTTCCCTGAAACTTGATA-----CGCTCCTTCACTGAA--ACTGAACCCTTCT-TTATCAAAAAGACTAGAAACTT------TG----GAACAGAAAC-------------------
i caePb3.Scfld02_0      I 58 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=-4434.000000
s ce10.chrX              5651827 43 + 17718866 TCTGCAAGTATTGTAATG-----GTTTATTTCCGTTCTAAC---------------T---ATATAC
s caeRem4.Crem_Contig0   2365360 28 -  4500979 ----GAA----------------GTTATAC----TTCTGGA-----------CTTAT---ATATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    208146 57 -  1189296 CCTTCAAGACGTGAGAAAAAGTcgtttattttgattttgaatc---------atttttagatGTAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3906587 43 +  4147112 TTTTaaa----------------gtttatt----ttctcaatcGGCAGTTCAATTCT---ATGTAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10952493 27 + 21540570 I

a score=117738.000000
s ce10.chrX              5651870 292 + 17718866 ACAAAATGGCACACGTTGC-TTGAAGCTATCAAA--CGTGACT--ATATTATAGTGAAGATCTGTTC--------TGAACTACAAACCCAGAGaaaaaataaacaattttaaat-----aaataatttaGTTCTTCTTTGCAGTGTTCTTCGCTTTCCATTGAGCAACAAATTCCTGCATATTGTGTGGAATTACTTGTGGCAAATTGATTTCTTCTTTGGCTTCAAATGTGAACAGAAAACGATCACAAATTTCGAATTTATTCGTGTTCGAATTGTAAACTTCCACTTGAGAGTTAACCTGAAAACAG-----------
s cb4.chrX              10952520 285 + 21540570 ACAAAATGGCACATTGTGT-TTAGAGTCGAAAAGACTGTGACA--AGATTCTAGTATAGAATATGAT--------TGGG----AGgaagtaaaaatgaaaaaaaaattataaac-----aa-----TTAGTTTGCTTTTGCAATGTTCTTTGCTTTCCATTGTGCAACAAATTCTTGCATGTTGTGTGGGACCAGTTGTGGAAGATTGATCTCTTCTTTGGTTTCGAATGTGAACAGGAAGCGATCGCAGAGTTCAAAAGTGTTGGATTCGGTGTTATAGACTTCGACTTGGGAGCTGATCTGAAAATAC-----------
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   2365388 291 -  4500979 ATTCAATGGCGCACAGTGCATCGAAGTTAGCAAGACTATGACATCAGATGTGAAACTAGACTCT--C--------CAAA----AAGACAATAAGATAAAGACGaagaaataaacaaatgaA-----TTAGTTCGTTTTTGCAGTGTTCTTTGCTTTCCATTGGGCCACAAACTCTTGCATGTTGTGTGGAACAACTTGTGGGAGATTgatctcttcttttgtttcaaatgtGAATAAGAAGCGATCGCATAGTTCGAAAGTGTTGGTTTCCGAATTGTAGACTTCAACTTGAGaactgatctgaaaataa-----------
i caeRem4.Crem_Contig0  C 0 I 60
s caeSp111.Scaffold626    208203 269 -  1189296 ----AATGGCACACATTGTGTGAAATCTAGTCAGACTAGAACA--ATACTCTAGTG-AAACTAGCAC--------AGAA----Aagacaaca-----------gaaaaataaac-----aa-----ttagTTCGTTCTTGCAATGTTCTTTGCTTTCCATTGAGCAACGAATTCCTGCATATTGTGTGGGACGACTTGTGGCAGATTGATTTCCTCCTTGGTTTCAAATGTGAAAAGGAAGCGGTCACAGAGTTCGAAAGTGTTGGTGTCAGTGTTGAATACTTCTACTTGGGAACtgatctgaaa------------caa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3906630 308 +  4147112 ATCGAATGGCACACATGGTGTGAAGTCTAGTTGGACTAGAACA--ATACTCTAGTG-AGACTAGGACGGAGgaggggaa----aaaagaatagga-aaataatgaaaaataaac-----aatttgtTTAGTTCGCTTTAGCAATGTTCTTTGCCTTCCATTGAGCCACAAATTCTTGCATATTGTGTGGGACGACTTGTGGGAGATTAATTTCTTCTTCGGTCTCAAATGTGAACAGGAAACGGTCGCAAAGTTCAAATGTAGATGTTTCAGTGTTGAAGACTTCTACTTGAGAgctgatctgaaaattatagaaaataaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=-3332.000000
s ce10.chrX              5652162 33 + 17718866 -ACCTTTTAGAACGTTTTAATTTT---GCAGCCTGTT
s cb4.chrX              10952805 37 + 21540570 ATAAGATTAGATTTTAACATTTCGCatagaaattgtt
i cb4.chrX              C 0 I 6
s caeSp111.Scaffold626    208472 18 -  1189296 -aaatatttgg------------------gaatcatc
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       3906938 33 +  4147112 -acatgttgggttgatgtagttgg---aaaaatcgtt
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeRem4.Crem_Contig0   2365679 60 -  4500979 I

a score=164525.000000
s ce10.chrX              5652195 280 + 17718866 TT------ACCTGGAATTTCTGTTCCTTGTTATCAACGTTGCAGACAAAAGCGCTGAACTTTAAAATACTTCCAATTTCCACGACTTTCATAAACTCTGCGTCATCAATTGAAGATACTCGAACGGAAGTTTTGGAGAACATCTTTGCGCAAAGTTCAGCAGTTTCAAGACCCTTCCTAACCAAAAAACCACCAAAAACTGATCCGTATGGGTTTTCGTGTTCTGGCTGTGCAATTGTCGTTGTTTCAACATTGGTTGAGTTCATGGTGACTTCACCATCCTGGAA
s cb4.chrX              10952848 279 + 21540570 tC------ACCTGGaactttttctctttgttATCAACATTGCAAATAAAAGCACTGAATTTGAGAATGCTTCCAATTTttacaactttcaaaaattcagcatCATCAATAGAAGCGACCCGAAGAGGGGTTCTAGCAAACATCTTGGCACAAAGCTCAGCGGTTTCGAGTCCCTTTCTGACCAAAAACCCTCCAAAAACCGATCCATATGGGTTTTCATGCTCTGGTTGGGCAATGGTTGCGGTCTCAATAATTGTGGAAGACATCTGTTGTTCTCCTTCCtg-ta
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2365739 280 -  4500979 TC------ACCTGGAATCTCTGTTCTTTATTGTCAACATTGCAAATGAATGcactgaatttcagaatactGCCAATTTCCACAACTTTCAAGAACTCGGCATCATCAATTGAGGCCACACGGAGTGGAGTCTTCGCAAACATTTTAGCGCAAAGCTCTGCAGTTTCGAGACCTTTTCTGACCAGAAATCCTCCGAAAACGGATCCGTATGGGTTCTCATGTTCTGGTTGAGCAATGGTTGTGGATTCTACAGTAGTCGATGTCATTGGTTGTTGTCcatcctgaaa
i caeRem4.Crem_Contig0  I 60 C 0
s caeSp111.Scaffold626    208500 286 -  1189296 ttttcctcACTTGGAATTTTTGTTCCTTATTTTCCACGTTGCAGATGAATGAACTGAACTTCAAAATGCTTCCGATTTCAACCACTTTCAAGAATTCTGCATCGTCAATTGAAGCAACACGAAGTGGAGTTTTAGCAAACATTTTAGCACAGAGTTCAGCAGTTTCTAATCCTTTCCGAACAAGGAATCCTCCGAAAACTGATCCATATGGATTCTCATGCTCTGGTTGGGCAATGGTGGTAGTTTCGACAGTAGTGGAAGTCATTGCTTGTTGTCCATCctagaa
i caeSp111.Scaffold626  I 10 I 37
s caePb3.Scfld02_0       3906982 280 +  4147112 tt------acctGAAACTTCTGTTCCTTGTTATTCACATTGCAGATGAATGAACTGAACTTCAAAATACTTCCGATTTCCAcgactttcaaaaactctgcATCATCAATTGAGGCTACACGGAGTGGAGTCTTGGCAAACATCTTGGCACAAAGTTCAGCAGTCTCAAGTCCTTTTCTCaccaaaaaaccaccaaaCACTGATCCGTATGGGTTCTCATGTTCTGGCTGAGCAATTGTGGTGGTTTCAACTGTTGTGGAGGACATTGCTTGTTGGCCATTCTGGAA
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=-1203.000000
s ce10.chrX              5652475 2 + 17718866 AT-
s cb4.chrX              10953127 2 + 21540570 aa-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2366019 2 -  4500979 aa-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3907262 2 +  4147112 -AT
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    208786 37 -  1189296 I

a score=-285.000000
s ce10.chrX              5652477 3 + 17718866 TGT-
s cb4.chrX              10953129 4 + 21540570 tatt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2366021 3 -  4500979 tat-
i caeRem4.Crem_Contig0  C 0 I 33
e caePb3.Scfld02_0       3907264 40 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    208786 37 -  1189296 I

a score=299.000000
s ce10.chrX              5652480 42 + 17718866 TTTTTTGGTTTAAAAAGGAATAATGTTTTGAGGTTTTCTTTT
s cb4.chrX              10953133 32 + 21540570 attttt----------caaataatgaaATGAGTTTATTTGTT
i cb4.chrX              C 0 I 1
e caePb3.Scfld02_0       3907264 40 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeSp111.Scaffold626    208786 37 -  1189296 I
e caeRem4.Crem_Contig0   2366024 33 -  4500979 I

a score=0.000000
s ce10.chrX              5652522 378 + 17718866 AATTCGGCAAAAGTTGGGCAAAACAGGGCAAGGGTTTGGCATGATCTTTTTTGGAAAGCCTTGTCTAACTTGTCTAACCTTGTCTTGTTGTAAGTCTTTTCTATTTTTTGCACATCTTTATCCACTTTTTACCAATTTTTGATGTAATttgtattgtattgtattttattgtTTATTGACTTGAATCAAGAAAAGTAAATGAAAAGTCAATAAATAAGTAACTTATTTATTGACTCACACTTGGATAAGAAGCTAAAGCAGAATGTAGAGTTAAAATTACCTCACTATCAGATAACCGAATTTCCCAATGAGACTTCTATGAAATACGATATTTAGCACGTTACAGCTAAAAAAAACCCCAGATTCTACTCCCCATTG
e caePb3.Scfld02_0       3907264  40 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10953165   1 + 21540570 I
e caeSp111.Scaffold626    208786  37 -  1189296 I
e caeRem4.Crem_Contig0   2366024  33 -  4500979 I

a score=31.000000
s ce10.chrX              5652900 15 + 17718866 AAATCCTGTTCTACC
s caePb3.Scfld02_0       3907304 10 +  4147112 aaatgttgtt-----
i caePb3.Scfld02_0      I 40 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10953165  1 + 21540570 I
e caeSp111.Scaffold626    208786 37 -  1189296 I
e caeRem4.Crem_Contig0   2366024 33 -  4500979 I

a score=0.000000
s ce10.chrX              5652915 1 + 17718866 C
e caePb3.Scfld02_0       3907314 0 +  4147112 C
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10953165 1 + 21540570 I
e caeSp111.Scaffold626    208786 37 -  1189296 I
e caeRem4.Crem_Contig0   2366024 33 -  4500979 I

a score=585983.000000
s ce10.chrX              5652916 1265 + 17718866  
s cb4.chrX              10953166 1248 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2366057 1275 -  4500979  
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold626    208823 1244 -  1189296  
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       3907314 1280 +  4147112  
i caePb3.Scfld02_0      C 0 I 1157
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=1655.000000
s ce10.chrX              5654181 9 + 17718866 TTGAAACAG
s cb4.chrX              10954414 9 + 21540570 TTGAGAAAG
i cb4.chrX              C 0 I 1212
s caeRem4.Crem_Contig0   2367332 9 -  4500979 TTGAGGAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    210067 4 -  1189296 -----GCAG
i caeSp111.Scaffold626  C 0 I 6
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=415.000000
s ce10.chrX              5654190 84 + 17718866 --GAAG------AAACAGGAAATAAATTTTTCTTGCAAAACACCAGAATT------ATTTAAAGAATGGCAGTAAAATCGAAATCAGCAA--TCTTGGAG-
s caeRem4.Crem_Contig0   2367341 87 -  4500979 AAGAGGTTTTGAAAAGTGCAATGGAATTCTGC--ACGACCCGTC--AATT------CCTTGAAAC----TGGAAAGAATATGGTAAACAACTTTCTGGAAG
i caeRem4.Crem_Contig0  C 0 I 2001
s caeSp111.Scaffold626    210077 82 -  1189296 --GAAG------AAAGTGCAAGCGACTTCTTC--GCAACCCATC--AATTTCATTCCTCTCAAAC----TGGTGAACTGGTGACAAACAG--TTTTGGAA-
i caeSp111.Scaffold626  I 6 C 0
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I

a score=-1653.000000
s ce10.chrX              5654274 251 + 17718866 AT-----ATAGACAAGA----GATGTAACTTTCAGAGAAAATTCACAAGTTTTTAACGCTAAATTTCGCAAAACAGAAATGAAATTAATAATCTTGAAAAATTATGGATGTCACAAAATTCAACTATCACATTAGTTAGTTAGGTATAACATCATTCAAAA------TGTTTTATATCATCAGATTTTTAATAATTGTCTGTATCTTTTTAGTTAGTTAGTGCTTTTATTTAACTTCTAGTTAAGGTTCTGATGAATGTTTTGTTG
s caeSp111.Scaffold626    210159 188 -  1189296 AGTGTCATTTGAAAGGACACTGATGACGCCGTCAGAGAAG----------TTTCAATCATAAGTAC----ATATAcagataaaatgaaaaatgtgaaa-----ccGGACATC----------ATCTTCATTCCAGTT-----GAAATACCGTAATTTGAAACCTGAGCGCTAAACTTCATTAAAATTATAA-------------------------------------------TTCCAGTTAAACTT-GAATGAACGTACTTCTG
i caeSp111.Scaffold626  C 0 I 20
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I
e caeRem4.Crem_Contig0   2367428 2001 -  4500979 I

a score=0.000000
s ce10.chrX              5654525 62 + 17718866 GCAGTTTATCTTTGGCTCTATTTTTCCAATTTTTCGGTGCTAGTGCTCAGTAGTGGATGTGG
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I
e caeSp111.Scaffold626    210347 20 -  1189296 I
e caeRem4.Crem_Contig0   2367428 2001 -  4500979 I

a score=-298.000000
s ce10.chrX              5654587 97 + 17718866 GAAAATAACTGAAACTTATAGTGTGAGCACTAACGTGTATGACAAATAAACAACAGGCAATTTTGGCTAAATGGTACAAGA-ACTATTTCTAAATCTG
s caeSp111.Scaffold626    210367 53 -  1189296 gaGATTAACT------------------ACTAAATTGTA-----------------------TTGGTTAA----TATAATATATCACTTATAAATGTA
i caeSp111.Scaffold626  I 20 I 130
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I
e caeRem4.Crem_Contig0   2367428 2001 -  4500979 I

a score=0.000000
s ce10.chrX              5654684 148 + 17718866 AATGACTGAATTTGAGTAATAACTTTAACTTATTTTTGAGCTGGTTTCTGCTCGCTGTTACCTGCTTTTTCTTATTCTTTAGATATCACAAATACTTTGAAAAAGTGCTACACCATGTATATGATTTATTGTCCAGTTGTAACATTTC
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I
e caeSp111.Scaffold626    210420 130 -  1189296 I
e caeRem4.Crem_Contig0   2367428 2001 -  4500979 I

a score=843.000000
s ce10.chrX              5654832 33 + 17718866 AAATTTTACACTGCTCAA---------TATGA-ACTTTCTTCC
s caeRem4.Crem_Contig0   2369429 43 -  4500979 AAATGTTACACTGTTCAGACGGCTAGCTATGCTATTTTgtttc
i caeRem4.Crem_Contig0  I 2001 C 0
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I
e caeSp111.Scaffold626    210420 130 -  1189296 I

a score=-1526.000000
s ce10.chrX              5654865 23 + 17718866 AAAACTGGATGTATTTTTGAGTT
s caeRem4.Crem_Contig0   2369472 11 -  4500979 ------atctct-ctctc-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    210550 18 -  1189296 AAGACTAGCTATGctgtt-----
i caeSp111.Scaffold626  I 130 C 0
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10954423 1212 + 21540570 I

a score=67.000000
s ce10.chrX              5654888 1 + 17718866 C
s cb4.chrX              10955635 1 + 21540570 C
i cb4.chrX              I 1212 C 0
s caeRem4.Crem_Contig0   2369483 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    210568 1 -  1189296 t
i caeSp111.Scaffold626  C 0 I 8
e caePb3.Scfld02_0       3908594 1157 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=59023.000000
s ce10.chrX              5654889 168 + 17718866 CTCTTCCTACGCAAGATACCCTTT------CGTTT--AGATCGAACGTTGATCGCTTCTTACATTTCTATCTCTTTGC-------------TTTTTTC--GTTGCAGACTG-AATAAAAACTGAAGACAAACAAGAATCTTTTTCATCATCAATTGATGCAGTCACTTTGAA-CCCAATTGACAGCTGTTCGA
s cb4.chrX              10955636 175 + 21540570 TTCTTCCTACGCAAGTTCC-CTTCATGAAATGTTG--CCACTGAACGTTGATCGTCTCTTCAAAGTCTATCTCTCTTCGATTctcagcaa-tttttttcagtggcAGACAG-ATAAAAAATAAAGTGCAAACAAGAGTCTTCT-------------CTCTGGTTACACTGAACCTTGATTGACACCTGTTTGA
i cb4.chrX              C 0 I 798
s caeRem4.Crem_Contig0   2369484 187 -  4500979 ctcttcctacGCAAGTTCT-CCTCAGGAAAACCTAT-TCATCGAACGTTGATCATTTCCCAGTTTCCtatctcttttc-cttttcaat-a-tttttttcaatagcagacggaataaaaaacaaagtgCAAACAAGAGTCTTCTCCAATGCTGCCGACTGCAGTTACACTGAA-CTTGAATGACAGCTGTTCGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    210577 174 -  1189296 tccATCCTACGCAAGTTCGTCTTAATAAAATGTTGCGCCACCGAACGTTGAtcatttc-------tctatctctcctc--ttttcaca-attttttttcagtgccagaca--gaaaaaaacataggGCAAACAAGAGTCTTCTCCAATGTTGCCGAC------TGCTTTGAA-CCCGAATGGCAACTGTTCTG
i caeSp111.Scaffold626  I 8 I 40
s caePb3.Scfld02_0       3909751 187 +  4147112 cCCTTCCTACGCAAGTTCCGTCCTATCAAATGTTGCCGCTTCGAACGATGATCGTTTCCCAACTTcctatctcttttc--ttttcact-a-tttttttcagcgccagacag-gaaaaaaagaaagtgcaAACAAGAGTCTCCTCAAATGTTTCCAACGGCGGTTACACTGAA-CCCGATTGACAGCTGTTCAA
i caePb3.Scfld02_0      I 1157 I 619
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=300.000000
s ce10.chrX              5655057 1 + 17718866 C
s caeRem4.Crem_Contig0   2369671 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 I 1469
s caeSp111.Scaffold626    210791 1 -  1189296 C
i caeSp111.Scaffold626  I 40 C 0
e caePb3.Scfld02_0       3909938 619 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10955811 798 + 21540570 I

a score=-3116.000000
s ce10.chrX              5655058 174 + 17718866 AACCTA----ATGTGCGGAGTCTTG--------------------------TGTGAAA--GGAGTTTGGACGGTCT-GGACATCTGGAAA---TGCAAAAAT-----------------------CATAATAATTTGTTTCACTTTACTAGTAATTAGAAAAATTGTTTTAA---AAAAAATTCGAGAAGTTAC--TTTCTGAATTTAATCGC----------AATTTCCAA-----TCAAAA-------AATCAACA--------------------------------------------------AA
s caeSp111.Scaffold626    210792 300 -  1189296 AGTCTACACTAGATTGACAGTTTTGAAGACACAGTGGAACGACAAATAATTTGTGaaaccaaatttttgataatttcagaaaagtggaaaattttcaataatagGGGACTCTGAGCGAAACTaaacaaataaatttat---attttattgtgaat----aaaatagttttcaggtagaaaat---agaattaaCCATTTCCAAACtaaatcaaatgtttttagagttttcaAGTAGTTCTAAAACTTGTCAATCCACACCTTAATACGTACAGCTCATTTTACACATCTGACATGCGATCattgtcagaa
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3909938 619 +  4147112 I
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10955811 798 + 21540570 I
e caeRem4.Crem_Contig0   2369672 1469 -  4500979 I

a score=-3658.000000
s ce10.chrX              5655232  53 + 17718866 AAAAACTTGCCT--------------------------------ATTCACAAAG-------------CAATATTCTTCATACAAAAGTCGA--------GACGAGT
s caeSp111.Scaffold626    211092 106 -  1189296 aaaaacgtttttgctTGATCAATCtggaaattctagaaaaactgattctgaaatagatcgaaacaaaaaatgattttcaaaaaaaatgttcaaacgcggaatttga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3910557  43 +  4147112 aaaaactttccc-------------------------------------------------------aAACAATTTTAAAAGAGCACTCTT--------gtttgga
i caePb3.Scfld02_0      I 619 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e cb4.chrX              10955811 798 + 21540570 I
e caeRem4.Crem_Contig0   2369672 1469 -  4500979 I

a score=906.000000
s ce10.chrX              5655285 3 + 17718866 AGA
s cb4.chrX              10956609 3 + 21540570 AAG
i cb4.chrX              I 798 C 0
s caeSp111.Scaffold626    211198 3 -  1189296 aaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3910600 3 +  4147112 aaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I
e caeRem4.Crem_Contig0   2369672 1469 -  4500979 I

a score=397.000000
s ce10.chrX              5655288 3 + 17718866 GAG
s cb4.chrX              10956612 3 + 21540570 GAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2371141 3 -  4500979 GAA
i caeRem4.Crem_Contig0  I 1469 C 0
s caeSp111.Scaffold626    211201 3 -  1189296 gag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3910603 2 +  4147112 ga-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    22593 2313 -   720316 I

a score=74753.000000
s ce10.chrX              5655291  90 + 17718866 A-----AGAAATCTTGAGAGAACAATTCTCTATTATGGATAAGTGGTGG----------GTTGAGGTGTCATCACAAGTTATCGCCAAATGCGGG-CAATGTT-CGT
s cb4.chrX              10956615 103 + 21540570 AAAC--GGAAATCTTG-GAGAACAATTCTCTATTACGGATAAGTGGGGGAGAGCTGTATTCTGAGGTGTCATCACAAGTTATCC-TGAATGCGGCAAAATGTTCCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2371144  91 -  4500979 ATGC--GAAAATCTC--GAGAACAATTCTCTATTATGGATAAGTGGTGGG---------TTTGAGGTGTCATCACAAGTTATCG-TGAATGCGGT-GAATGTT-CGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    211204  92 -  1189296 acgATTGAAAATCTC--GAGAACAATTCTCTATTATGGATAAGTGGTGG----------TTTGAGGTGTCATCACAAGTTATCG-TGAATGCGAT-GAATGTT-CGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3910605  86 +  4147112 ------gaagatcTC--GAGAACAATTCTCTATTATGGATAAGTGGTAT----------GTTGAGGTGTCATCACAAGTTATCG-TGAATGCGGT-GAATGTT-CGT
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold18213    24906  84 -   720316 -----AGAAAATCTC--GAGAACAATCCCCTATTATGGATAAGTGGTGG-------------GAGGTGTCATCAAAAGTTATTG-GAAATGCAGT-GAATGTTCCG-
i caeJap4.Scaffold18213 I 2313 C 0

a score=-5378.000000
s ce10.chrX              5655381 19 + 17718866 GTGCGCATCCGA-GAGC--AGC
s cb4.chrX              10956718 17 + 21540570 ---CGCTTCGCTAACGC--AGC
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2371235 16 -  4500979 ---CTCCTCCCT-GCGC--ATC
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    211296 20 -  1189296 --CCTCTTCCCTCACGTTGAGC
i caeSp111.Scaffold626  C 0 I 2
s caeJap4.Scaffold18213    24990 11 -   720316 TCGCGTATCTC-----------
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3910691 24 +  4147112 I

a score=208138.000000
s ce10.chrX              5655400 430 + 17718866 TTCTTTAATACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGAAGCTGAAGACAACAAAACAAAGCCACTTTGAATCTC-----CCG-CCCGTCCATGTAAGCGAATCCAACGGCC-CACAATTTTTCCC----GTCTGTTATTCA--TTT-CGGTTTATATTCTTCTTTCTCAGGTTG----AATTTCCATTCTTATCTCCATATTC------A--CTTTAGTTTCCCAACAACTTTCCTATATCTAA-----GAATCACTAATTTT---CCACACCACAATCGAAAGTTT------ATACTTGAGCAGCAACAAATGTCAA-GCTGGCACCAAG-AGGTTTCCAATTCAA-GCTGAACAATTTGATTATCAAGAGTTAGCCAGGTAGCTTGACGGAAACAATTGAATAGGACCTAGCTATAATCAAATCA-AAAGTTTCTTGTGAGAGCA
s cb4.chrX              10956740 387 + 21540570 -----TACTACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGAAGCTGAAGACAACAAAACAAAGCCACTTTGAACCTCAGGGTCCC-CACGTCTATGTAAGCGAATCCATGCGCCACACAATTTATCCCCGAATTCTGTTATGCA--TTCTCTTTCCGtg---ttattttcaagttt-------cttcAAACTG----------TTC------A--ACTgg-----ttcattctttttttttct------------tcactgaTTCC---CCAAAT---------------------------AGGCCGAAACAAAAGTCGA-ACTGACACCCAA-GCGTTTCCAATTTTG-CCTGAACAATTTGATTATCCGAAAACGACCAGGTAAC-TGGCGGAAACAATCGAATAGGCTTGAGCTATAATTAAATAACAAATTTTCCAGTGAGAGCA
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2371257 392 -  4500979 TTCCTTACTACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGAAGCTGAAGACAACAAAACAAAGCCACTTTGAACC-------CCG-CCCGTCTATGTAAGCGAATCCATCAGCC-CACAATTCATCCCCTATCTCTGTTATGCA--TTC-CTGTCTATG---TTCTTTCTTAGGTTG-----AATTCTATCAT----------TTC------GGTATTGAAAGTCTTGACTGATTTTgctt-----------------ctgatttt---caaaatc---------------------ttatcAATCAACGACAGAAGTCGA-ACTGGCACTAGA-GAATTTCCAATTTAG-GCTCAACAATTTAATAATCAGGAGTTGGCCAGGTAAC-TGGCGGAAACAATTGAATAGGACCTGGCAATAATCAAATCA-AACGTTTCTTATGAGAGCA
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    211318 368 -  1189296 TTCCCTACTACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGAAGCTGAAGACAACAAAACAAAGCCACTTTGAATC-------TCGCCCCGTTTATGTAAGCGAATCCGT-CGCCACACAATTCATCCT--AGGTCtgttattcattttc-ctgtcaatt---ttttctccatattt-----------------------------c------g--att-------ttcataGCCCGG---------------------CTTAATGT---CCAAGTT---------------------CTATTGGCCAGCAACAAGAATCAAGGCTGGTACTAGAGGGGTTTCCAATTTTG-TCTCAACAATTTGATTATCAAGAGTTGGCCAGGTAAC-TAGTGGAAACAATTGAATAGGACCTAGCTATAATCAAATCA-GAAGTTTCTTGTAAAAGCA
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3910715 363 +  4147112 TTCCCTACTACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGAAGCTGAAGACAACAAAACAAAGCCACTTTGAACC-------TCG-GCCGTCTATGTAAGCGAATCCAT-CGCC-CACAATTTATCCT-AAGATCTGTTATGCA--TTC-TTGTTCA-----TGTTCTTcgtattt-----------------------------caaaagaa--act-------cTTATAGACTCT---------------------CCTATTCT---TCAG------------------------TTGAGAGCCA-TAACAAAAGTTAA-GCTGTCACTAGA--GGTTTCCAATTTTGTTCATAACAATTTGATTATCAAGAGTTGGCCAGGTAAC-TGGCGGAAACAATTGAATAGGACCCAACTATAATtaaattg-aaagtttcttGTAAGAGCA
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold18213    25001 421 -   720316 TCTCAAACTACAGATGCTCCAACATCTCATTCCCACTCAATTACAATGGGTAATTGTGCACTCGACGCTGAAGACAACAAAACAAAGCCACTTTGAACGT------CCG-TCCGTCTATGTAAGCGAATCC--------CAAATCTCCGTGCCCGTGTCCGTTAtgca--ttc-cattccattccattctatTCCTTCCTGTCCATGTTCACATCAT------------C------A--AGTCG-----CCAAAGGtttttcctcgttttgtttctttcttcCCGACGCTGCACCACATCAAGAATAGAATTTTCGGGGGAGTGGAAAGTGGGCATAGGACTTGT-CCTGGCACCATT--GGTTTTCACATTTG-ACT---CAATTTGATTATTGATA-TTAGCCAGGTATC-TGGCGGAAACAATCGAATAGGCTCTGGCAGTAATCTAATCA-AAAGTTTCGTGTCGGAGCA
i caeJap4.Scaffold18213 C 0 I 33

a score=-66706.000000
s ce10.chrX              5655830 527 + 17718866  
s cb4.chrX              10957127 246 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2371649 326 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    211686 233 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3911078 488 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    25422  33 -   720316 I

a score=80312.000000
s ce10.chrX              5656357 369 + 17718866 TCAAAGCTTCCattataaaaaaaattatt-----tcgaattatttttatgt---aaa-------atttCAACTGTCTTGCTCAACGATTCTACTTGAAATGAGACATAATACTTA---TTTAGAACA-CGAGTAGTCTACCCTTGCGCATCTCTGTCTTGCAAACGGAAATCCACAAAGGGAAAACTCTGCGAAG------CCATTTGCGGCTAGAGGGCAACTCTTTGTGCAT--ACAATTGCAAAGGCTAATTGCTGAGTTAATTCAAATTACGCATTC-TTTAAAATCACGATGGCTCTGAGGTCTTAAACCAGAAGTCCCGATGTCAT-------CAAAATTTCACTTCAGA---------------------------------------------AAAATGTCTTCCAAACCGT----TTGTTTTCTCTCAATT---------TTTCAATTTTATT-
s cb4.chrX              10957373 307 + 21540570 tcag-----------------tctcta-------------tatttttaaa---------------------ttgacAC---------------TAAATGTGAGGTATAATGCTTC---CTTTGAACA-CAACTATTATA-----ACGCATCT-TTTCCTGCAAACGG--------AAAAGggaaactttgag---------ccatttgcC--GAGAGGGCAACTCTTTG------------TGCAAAGGCTAATTGCTCGGTTAATTCAAATTACGCATTC-ATTGAAATCACTTGTGCTCTT--------AACCTGAGGTCCCAATGTTAC-------TGGAAGGACAATTgtcc----------------------------ccgtttttttttctctcgaaattttccaaaaccttt----ttttcttctctcatcccaaggaaaattttaatttcctc-
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   2371975 342 -  4500979 TCAG-------------AACATTAATA-------------GACTTCTAGAC--------------TTTTTTCTGTCAC---------------------TGAGGTATAATGTTTG---CTAAGAACA-CAAGTAGTCTA-----ACGCATC--TTTCCTGCAAACGGAAATCCACAAAAGGAAAACTCTGAA---GGC---CCATTTGCC--GAGAGGGCAACTCTTTGTGGCC--AAGATTGCAAAGCCTAATTGCTCAGTTAATTCAAATTACGCATTC-ATTGAAATCACTTGTGCTCTT--------AACCTGAGGTCCCAATGTCAT-------CAAAAGGTCACTTTTCCTGTccgaaat------------------ttggttttttttttct----attttccaccgtcttccaaatttttttctaccgcttctcaaacaatttcaatttcttt-
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    211919 302 -  1189296 tcaa-------------caaaaatcta-------------aaattttcta----------------gtATTCTGACTT---------------------TGAGGTATAATGCTTC---CTTAGAACA-CTATTAGTCTA-----GCGCATCT-TTTATCCGAAACGGAAATGCACAAAGGGAAAACTCTGAGAAGGGG---CCATTTGCTAAGAGAGGGCAACTCTTTGTGACC--AAGATTGCAAAGCCTAATTGCTCGGTTAATTCAAATTACGCATTC-TTCGAAATCACATGTGCTCTT--------AACCTGAGGTCCCACTGTCGT-------CAAAAGTtcacttttcg-------------------------------aattcttaATAATAAGGA-----------------------GCTTTCTCA------------TTTtgcaattctc-
i caeSp111.Scaffold626  C 0 I 76
s caePb3.Scfld02_0       3911566 333 +  4147112 tcca-------------gaaacatct----------------ttttccta---------------ttttttctgtctt---------------------gGAGGTATAATACTTC---CGTAGAACA-CAAGAAGTCTA-----GCTCATCC-----TACAAAACGGAAATACACAAAGGGAAAACTCTGAGAAGGGGGACCCATTTGCT----GAGGGCAACTCTTTGTGGCCAAAAGATTGCAAACCCTAATTGCTCAGTTAATTCAAATTACGCATTC-TTTGAAATCACTTATGCTCTC--------AACCTGAGGTCTCCCaaccattttcaaacaaaagggCAATTTCAA------------------------------TGGtacttgttgaaaaaaattttcatgatccctt--attttcgttttttcatctcT-----AGTTTTAAGAACCTT-
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213    25455 382 -   720316 Tcaattctccaatttttaaaaaagttttttactattatatgaattttataatttaaacttccgtgtttatcttttttt---------------------tga-----aatgctcAAAGTTTAGAACATTTGGTAATCTT-----GCGCATCC-TGCACT----ACGGAAGTCGACAACGGGAAAACTCCGTG----GC---CTATTTGTC----GAGGGCAACTCTTTGTAGCC--AAGATTGCAACGGCTAATTGTCCAGTTAATCCAAATTACGCATTCTTTTGAAATCACTCGTGCTCCT--------AAC------TCTCAGCAGCCT-------CATAAGTGCATGTTTCAATTTTAGATTCTTCCTCTATCCACCCTCCTCCatattatttccaaaaaatttccagaaaacaat------ttttttcatcatcttc-----attttcaaaatgtctt
i caeJap4.Scaffold18213 I 33 C 0

a score=-8231.000000
s ce10.chrX              5656726 44 + 17718866 CCAAT---ATTGAAGGTATATAT--GACAAGTCT--------------TTGCT-----------------TGGGAATATT
s cb4.chrX              10957690 73 + 21540570 TCAGTTTGAATATAAGTTTATTT--GTCAACTATCGTATCATC-----TTTaatgaagagaaagaaaggGGAGTAAAACT
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2372324 56 -  4500979 tcaGTGGGATTATTATTCTATTT--GACAACTATCGTATCATC-----TTAAA-----------------GAGGAAAACT
i caeRem4.Crem_Contig0  I 7 C 0
s caePb3.Scfld02_0       3911904 39 +  4147112 ----------------------C--GAATACTATCGTATCATCATCTTTTGGG-----------------GGGTAAAACT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213    25837 41 -   720316 --------CTTTCCGCTTTCTTCAAGTATATTATCGTCTCATCTTC--TTC-----------------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    212221 76 -  1189296 I

a score=144433.000000
s ce10.chrX              5656770 157 + 17718866 GTTGAGT-ACTAAGTTGAGATATATTAAATGCGATATTAGCAATAAAGGCATTTG-CTGGTCTAGTGGGCAGCACAGATTGCCTAAGGGTGAACCCCCAACGAAGCGAGCGCATTTGTTGTGCCGTG---GA--------------AAAGAAT----AAAGATATGAAGATGAGCACCTC
s cb4.chrX              10957763 164 + 21540570 ---ACGGAATTGAGTTGAAATATATTGAATGCGATATTAGCAATAAAGGCATTGCCCTGGTCTAGTGGACAGCACAGATTGCCTTAGGGTGAA--CC----GCAGTGAGCGCATTTGTTGTGTCGAG---AAGGAATGAGGGGGGTGAAGAAT----GAAGATATGAAGATGAGCACCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2372380 146 -  4500979 ---GCGG-ATTGAGTTGAAATATATTGAATGCGATATTAGCAATAAAGGCA-----CTGGTCTAGTGGACAGCACAGATTGCCTTAGGGTGAACCCC----GAAGTGAGCGCATTTGTTGTGTCGtg---ga--------------aaagaat----gaagatATGAAGATGAGCACCTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    212297 147 -  1189296 ATTGAGA-GTTGAG--GAAATATATTGAATGCGATATTAGCAATGAAAGCATTGC-CTGGTCTAGTGGGCAGCACAGATTGCCTTAGGGTGAAACCC--------CCCGCGCATTTGTTTTGTCGtg---ga--------------aaagaat----gaagatatGAAGATGAGCACCTC
i caeSp111.Scaffold626  I 76 C 0
s caePb3.Scfld02_0       3911943 151 +  4147112 --TGCGA-ATTGAGTTGAAATATATTGAATGCGATATTAGCAATAAAGGCATTGC-CTGGTCTAGTGGGCAGCACAGATTGCCTAAGGGTGAAACCC----GAAGTGAGCGCATTTGTTTTGTCgtg---ga--------------aaagaat----gaagataTTAAGATGAGCACCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    25878 158 -   720316 AGTGCGC-ACAGAGTTGAAATATATTGAATGCGATATTAGCAATAAAGGAATTGG-CTGGTCTAGTGGGCAACATAGATTGCCTTAGGGCGAA--CT----GAGGTAAGCGCATTTGTTGTGCTGGGCCAAG--------------AAAGAATGaaagaagaaatgaagatGAGCACCTC
i caeJap4.Scaffold18213 C 0 I 191

a score=29468.000000
s ce10.chrX              5656927 71 + 17718866 ATATGCTGCTCCA--AC---TTGCTGTAGATTTTCGTGGTTCCACACGATGGGAATAT-TCTATTCTTAGGTCCCTT
s cb4.chrX              10957927 67 + 21540570 ATA---TGCTCAAACAC---ATTCTTTAG--TTTGGTGGTCC--CACGCCGTGAATCCTTCTGTTTTTCCGTCCCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2372526 64 -  4500979 ATA---TGCTCCG--AC---ATTCTTTAG--TTTGGTGGTCC--CACGCTGAGATTCC-TCTGTTTTTCGGTCCCTT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    212444 65 -  1189296 ATA---TGCTCCG--AC---ATTCTTCAG-TTTTGGTGGTCC--CACGATGTgaattc-tctgtttttcggTCCTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3912094 67 +  4147112 ATA---TGCTTCT--TCACAATTCTTTAG--TTTGGTGGTCC--CACGCTGCGAATCC-TATGTTTTTCGGTCGCTT
i caePb3.Scfld02_0      C 0 I 31
e caeJap4.Scaffold18213    26036 191 -   720316 I

a score=-245.000000
s ce10.chrX              5656998 38 + 17718866 GGTACACT-TGGTTCCATTTTTA---TTTTTATCCAGCTCGC
s cb4.chrX              10957994 39 + 21540570 --TCGAAA-TAATTCCGTTTTTGACTTTCATATTTGGATCGA
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   2372591 41 -  4500979 TACTAAAT-CGGTGCCATTTTTAACTTCCACATTTAGAATTG
i caeRem4.Crem_Contig0  I 1 I 8
s caeSp111.Scaffold626    212509 34 -  1189296 --TTAAATCCGGTTCCCAATTTAGATTTCtcgtttc------
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       3912161 31 +  4147112 I
e caeJap4.Scaffold18213    26036 191 -   720316 I

a score=10582.000000
s ce10.chrX              5657036 40 + 17718866 GATTGAAGAAAGCGAAATTGACAAATTCAAATTGACACGA
s cb4.chrX              10958045 40 + 21540570 GAAGGAAATGGAAAAGGATGACAAAGTAGAGTTGACAAGG
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2372640 40 -  4500979 TAAGGAGAAAGGTAAAAATGATGAACCAGTTGTGACAAGG
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    212544 40 -  1189296 attgaaaataggtAAGATTGACGAATCTGTGTAGACAAGA
i caeSp111.Scaffold626  I 1 I 203
s caePb3.Scfld02_0       3912192 40 +  4147112 GATCAGACGAGGTAAGATTGACGAATTCAAATGGACAAGA
i caePb3.Scfld02_0      I 31 C 0
e caeJap4.Scaffold18213    26036 191 -   720316 I

a score=-1321.000000
s ce10.chrX              5657076 29 + 17718866 -------CTA-ATGGAAACTAAGATCCAGATGTCGAA
s cb4.chrX              10958085 32 + 21540570 ---TTTGTAATTTATAAATTAGTCTTTG--TGTCAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2372680 31 -  4500979 ---CTCACTA-ATGGAAATTAGTGTTTA--TGTCAAA
i caeRem4.Crem_Contig0  C 0 I 226
s caePb3.Scfld02_0       3912232 25 +  4147112 Tggtttg--a-atagaaattaGAGTACA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    26036 191 -   720316 I
e caeSp111.Scaffold626    212584 203 -  1189296 I

a score=-1954.000000
s ce10.chrX              5657105 36 + 17718866 TATGGCTTTGTTCAATTTACTCAAAAGTGCTTTATT---
s cb4.chrX              10958117 28 + 21540570 -------TTGTATGAT----TCTTTGAAATGTGATGCTC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3912257 28 +  4147112 --------TGTCCAACCTCATCcataatttttgatt---
i caePb3.Scfld02_0      C 0 I 142
e caeJap4.Scaffold18213    26036 191 -   720316 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=-27.000000
s ce10.chrX              5657141 167 + 17718866 AAATAGCAAATGTAACGTTCTAC-------------TTACTTCGACTTTAGATTTCAAGTCAGT---GTTTAAACAACTAGTAACGGT--TTTGTTTCAAAATTTT----AATTTAAAAA--GTAAATTTCAAAA----AATGATTTTTGGGTGCGTTTCAATTCTTATA---------------------TTCAGA----------CTCAGTGCCATAGAATCAC
s cb4.chrX              10958145 224 + 21540570 AGATGGCTAATGCACTGTCGAAGAAGCACAAAAAggtgaattcaattttcgagagTGAATCGGTTTCATTTAAACTCTTGGCAGTGACAGCTTATgtcaagattttcgaaaattgacaaactTTAAATCTGAGGGttttaatgttttttgcttgcgag--aatttttataaaagtgttttatagaaattcttttaaaaaatgtatctcccACGGTCAATAAGTCAT
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3912285 142 +  4147112 I
e caeJap4.Scaffold18213    26036 191 -   720316 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=-6088.000000
s ce10.chrX              5657308 239 + 17718866 AAATTAAATATTTCAACTTTGACGAATTTTGACACTGAT------GCATATTTTCTGGCCCAA--TTTTATATCTAACTG---TCATATTTGGGAGCAGGG---------------GTGCTCAGTAATAGAAAA--TGTCGGAAACCGGTAAATTCAGCTCGTAGTGGTTTTTTTTTTGAATTATCGAT--TTTTAATATTTCGCACAGTCAGCATCGTCGAAAGTTGCTGAAACTAATGAAAATCTTGACATTTTCAAATA---TTTTTTG
s cb4.chrX              10958369 183 + 21540570 aaatcaaagaat-----tttttggaacgtCCATAAAAGTCCCTGGTCATGTCTTTTAGCAGAA------ATGTCAGACTA-------GTCTAGAAATAGAT---------------GGCTTCAGTCATTGAAAC--TGT--------------------------taatttttgttctaaa------atGGCAACAAAGTTTAGCACag------------------gctgaaaatcacaataCCCTCG----TATAGGATATCCTTTTTTG
i cb4.chrX              C 0 I 54
s caePb3.Scfld02_0       3912427 196 +  4147112 AAATTATAGGGTTCGTCTTTTTAGAGCGCTCAGAAAAAAC-----GCGTagttttcaagacaaaaaCTTATATAGgactaatttttgatttgaaaactgatacaGGAATGTGACTGGACTTGAAGTTTTGTAATTATGT--------------------------GAGCTTCGattttaaa------at--tatgaaaatttatca---------------------GC---------CTCTTTTTTCG----TTCAACACA---CTTGTTG
i caePb3.Scfld02_0      I 142 C 0
e caeJap4.Scaffold18213    26036 191 -   720316 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=-296.000000
s ce10.chrX              5657547 48 + 17718866 GGAATGTTCAAAAAAATTTCGAAAATTTAAGAATTAAATCCTCAATAT
s caePb3.Scfld02_0       3912623 38 +  4147112 GAA--GTTGTAGAGAAT---GGAAATTGCTGAACTA----CCCAA-AC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    26036 191 -   720316 I
e cb4.chrX              10958552 54 + 21540570 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=-18059.000000
s ce10.chrX              5657595 403 + 17718866 ATTTTGTGAATTTAGTAATTC------G-----CCAAATGTACTCTCCAGTAAATTCTTTTAAAAATAAGATTCG-----------------AAAGCCTCTTGAAAAATTATAATTTTGCAAAGACACACTAATTATATGCAATTTTATGAAATGTTCAACATTTGTTATGTTCGACgtttttgaaatttgtcaatgggcaact---tttcctacatataatccgagaaaatgttctgcaatcaacaattttgacaattgccgggtttttttttatttttggcaatcggaaaAGTTACCAAAACTGTAGAAAATAGGACTGTCGAACAGCAGTTGACATGTATTCATATACGGAAGGCACATAAAATAATTTAAGCAATTTTCACATCCGTCATGGAGCTAGTGTTCTTTAAA--GACCGTTATCTGCTTAAA----CAT
s cb4.chrX              10958606 316 + 21540570 ATTAACTAAGtttagtagttttttttggtgCTTCCTGATACATTTCCGA--ACAATAAGTcataattcgatttttcagcggTAAAGTTAAGATTGGACTCcagaaaaacttcaatttcaaattg-------------------------tttttgttcttAAATTGTCGGACATTACTATCTAGAA-------AAGgggatgtt---tttttta----------------tttttctgtaacTGAATACT----------ATTGGCCGTTTTGTAATCT----GATAAGAAAAACGG-CAAGGTTGTA---------ACTCT------------------------------AAAAGTAccgaaaatgacaaa----------------atcaGCGAGATGA-GAGTtgtgaattgaaaattttccactgaaaaaagatt
i cb4.chrX              I 54 C 0
s caePb3.Scfld02_0       3912661 275 +  4147112 --------AGTTTCGAAGTCCCATT--GTGC--CAAAATACATTTGCAACCATATTGGttcatataaaaactttt----------gttgaCAGGATGCATTGTTGttatttccattcaaaactAACA-ATTGA-TACACGCACTTATATTTTTTATcctacatttttcaaacatgttGGTCT-----------AAGGGCCTGTTGACTTTTTCATTTACATT--------TTTATCTACAGATAATCACT----------CCtgcttctcttccttttt----gcTCATAA------------TGGTT---------ACTGT-------------------------------------------------------------------ATCTTTGAATTGAtgtttttctaattga--------------------att
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    26036 191 -   720316 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=-8465.000000
s ce10.chrX              5657998 85 + 17718866 TTGTCTATTGTT--TCATACTACTATTGCTCAATCCCTTAATATGACCTACTCATTGTTTCCAACACTTT--CTACACTTTCTCCTCTC---
s cb4.chrX              10958922 73 + 21540570 ttgaatatGATT--CGCTTTAACTGATACT----------GTAGGAC--ACATCTCTCCCTTTCCATTCT--CTGTTATTTCTAATTTC---
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       3912936 50 +  4147112 ctgaa----att--tctttcaaa----acc----------aTA------ACCCCTTTTTCCAAACATTCT--TTTGTA--------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213    26227 73 -   720316 TTGTCTGTGGTTGCTCAGTCTGCTCTTGCT-------------------CCCTATTAGTCCCAGtatattgattttaattttccactTCTTC
i caeJap4.Scaffold18213 I 191 C 0
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=0.000000
s ce10.chrX              5658083 3 + 17718866 GTA
e caePb3.Scfld02_0       3912986 7 +  4147112 I
e caeJap4.Scaffold18213    26300 0 -   720316 C
e cb4.chrX              10958995 5 + 21540570 I
e caeSp111.Scaffold626    212584 203 -  1189296 I
e caeRem4.Crem_Contig0   2372711 226 -  4500979 I

a score=282836.000000
s ce10.chrX              5658086 496 + 17718866  
s cb4.chrX              10959000 541 + 21540570  
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2372937 472 -  4500979  
i caeRem4.Crem_Contig0  I 226 C 0
s caeSp111.Scaffold626    212787 489 -  1189296  
i caeSp111.Scaffold626  I 203 C 0
s caePb3.Scfld02_0       3912993 480 +  4147112  
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213    26300 490 -   720316  
i caeJap4.Scaffold18213 C 0 I 39

a score=-5819.000000
s ce10.chrX              5658582 65 + 17718866 -----------TAACAGCGAGATCCCACCAATCAGCGTTCCGGTCTTGGCAGCATTGCTTTGAAATCCATTTAAT---C
s cb4.chrX              10959541 53 + 21540570 --ttattttcttatcagt--------tctgATTCCTGTTCCCGATTG----------------AAGccatttttttccc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2373409 61 -  4500979 --CTCGTTGCTTCTCACTA-----CCACTAATCAGTGTTCCGGCTTG--------TCTATTGAAATCCattctat---c
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213276 63 -  1189296 ACGCcctcaattttcatt--------ttcaatcagtGTTCCGGCTCT-----CGAGCTTTCAAAATCTATTTGAT---C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3913473 44 +  4147112 --------------TATT--------TCCA---AGTGTTCCGGCAAC-----CCGTCTCTAAAA--CTATTTGAT---T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    26790 39 -   720316 I

a score=85386.000000
s ce10.chrX              5658647 172 + 17718866 AAAACGAGC--------AAC-----AA-------AAAAAAAGGTCTG----------------GCGCGAGAATTGCATTATTTACATAG------TGA-GG--------CCCCC------CACGTCTAT---CC------CAGATAGCTCCGCCATTTATGAGCATCGCTGTTCTGTATAGGGCTCAGGGTGTCG--AGTTGAATGCAATTAAGTTTCGAGCGCA-AGTATTGTTGTCCAG
s cb4.chrX              10959594 187 + 21540570 gaaatgaGACAAAACATGAc-----atgagtttcaaaaaaaatcctggGTGGGTGCCGAATCCGC--GAATATAGCATTATTTACTCAGTCCGAGCCA-G---------CTCAA------TTTCTCTTTCACCCA-TCTTC-------TGTGCCATTTATGAGCAGTGCTGTTCTGTATAGGGCTCAGGGTGTTGTTTGTTGAATACAATTAAGTATT-----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2373470 181 -  4500979 aaaatgaaa--------gGC-----AC--------AAAAAACGCCTG----------------GC--GAAAACTGCATTATTTACACAG--CGGTCGA-G---------CCCCACGGCCGTTTCTCTGT---CTA-TCCGCAGATAGATGTGCCATTTATGAGCATCGCTGTTCTGTATAGGGCTCAGGGTGTCG--AGTTGAATGCAATTAAGTTTCGA--GCA-AGTATTGTTGTCCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213339 181 -  1189296 GAAATGAGC--------AAcaagcgaa--------aaaaaaggtCTG----------------GCTTGAAAATGGCATTATTTACATTG--AGTCGggcgt--------ttctt------tttttctat---cca-----CAGATATCTGTGCCATTTATGAGCATCGCTGTTCTGTATAGGGCTCAGGGTGTCG--AGTTGAATGCAATTAAGTTTCGAG-GCG-AGTATTGTTGTCCAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3913517 179 +  4147112 AAAATgagc--------aac-----ac--------aaaaaaggTCTG----------------GCTTCGAATTGGCATTATTTACATAG--CGGCCGA-GT--------CCCCA------TATCTCTTT---CCATTCTTCGGTTGGCCGTGTCATTTATGAGCATCGCTGTTCTGTATAGGGCTCAGGGTGTCG--AGTTGAATGCAATTAAGTTTCGA--GCA-AGTATTGTTGTCCAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    26829 175 -   720316 AAAACGATG--------GCT-----CT--------aaaaaaaCCTCG----------------GT--GAAAATGGCATTGTTTACATAG--TGGCTAA-AGAAAGGGAATCCGC------GTTGCCTAT---CGG------------AGGTCCCATTTATGAGCATCGCTGTTCTGTATAGGGCTCAGGGTGTCG--GACTGAATGCAATTAACTTTCGGA-GCAGAGTATTGTTGCCGAG
i caeJap4.Scaffold18213 I 39 I 233

a score=21670.000000
s ce10.chrX              5658819 113 + 17718866 AAGGGAGTGAT-GGAAAAAAGTT----------AAGGGAGTGTTGGGTAGAATGGGAAACGAGG-----------------GAGGGCTTGCTGGATTAAGCCCCATAAAATGGGTATAACCTCTGTTTTG-TTTTTTTAGAC--------
s cb4.chrX              10959781 134 + 21540570 ----GAGTGGT-AAAAAGTAGTTAGCAAATTTTGGGGGAGGGTTAGG---AGCAgagaatggaaaaaatgggCGAGGGTCTATAGGATTTGTGAGCGTCCGCTCATAAAACTTATAAAACCtctgtttttgattattttgtc--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2373651  99 -  4500979 AAGGGAGTGGT-AAAAAGAAGTT-------------GGGTGGATGGG---CGATGAGAATGGAA-----------------ACGGGATTTAGGGGGTTGGGCTCATAAA----ATAAAACCactgttttc-attattt------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213520  96 -  1189296 AAGGGAGTGGt-aaaaagaagtt-------------gaagtAGGATG---GGTGGAGAATAGAG-----------------AAAGGGGTTTAGGGTTTAGCCTCGTAAAATGGATAAAATCTCTGTTTTG--------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3913696 117 +  4147112 AAGGGAGTGgtaaaaaagaagtt-------------gaagtaGAGGGT--ggaggagaatgaaa-----------------aaagaggtttaGGGTTTAGCCTCATAAAATGGATAAAATCTCTGTTTTg-atccttttttgttctaaac
i caePb3.Scfld02_0      C 0 I 421
e caeJap4.Scaffold18213    27004 233 -   720316 I

a score=-57401.000000
s ce10.chrX              5658932 293 + 17718866  
s cb4.chrX              10959915 460 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2373750 163 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213616 104 -  1189296  
i caeSp111.Scaffold626  C 0 I 68
e caePb3.Scfld02_0       3913813 421 +  4147112 I
e caeJap4.Scaffold18213    27004 233 -   720316 I

a score=-14756.000000
s ce10.chrX              5659225 153 + 17718866 AC---------------------------------------------------------------------GAGTAGTAA---AGAATCCCGACGGCATAAGACATGCAATATTGA----------GTGgtctgtcgcgaacctcgatcgttgtcggcc---gcggattttgagataaggcttAA-AAGCTT--GGAAAGCTATCACACAC-------AGCAGATTCTAGTAGCTTGAATCTTGAA-------------AA
s cb4.chrX              10960375 254 + 21540570 TCAAACATTCTCTTACAAAATGAgatgagctttttttttgattttcgcaaAGCGAGATGAGCAGTTTTGAAGTGCGACAATGTTCATTTCA----GCATAAATTTTGCAttgtgacatttttttttgtgttcagt---gcattttgaactttatagccatggaaaaatttgagaatttattttcagaatcttaaagtTGACTATCTTTCACTGATAAAGTCAAAATATGATAGTTTTTGTCCGGTACTCTATCTGCCCGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2373913  90 -  4500979 TC-----TTCT------------------------------------------------------------ATGCTGCaa---ttaattca--------aaatcttGCTCCATAAC-----------TGATCGG------------------ATATGCA---AAAGATTTTGTAATGTAGT-----AATTCT--------------------------GGCAAAATA--------------------------------AC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3913813 421 +  4147112 I
e caeJap4.Scaffold18213    27004 233 -   720316 I
e caeSp111.Scaffold626    213720  68 -  1189296 I

a score=-18631.000000
s ce10.chrX              5659378 101 + 17718866 TCTGTACATAT----TGTATACGATTTGTGCGTTAGCTCACAATCAAAACTGAAGACT-----ATTAGAAATTTCTTTGCAAATCTCATCATATCACATGGTCAGTCCC-------T------------------------------------------
s cb4.chrX              10960629 158 + 21540570 TCTTTTCATTCTCCCTCAATGTTACTAGGGCGATAGGTCAGAGCTTGATCAT-AGTTTcatagtttcagatttttaatataaCTCAGAAAAAAGCCAAACGTTGTTttgtaatttgtttttttgaattttcttggtCCCTCATCAATTCTCTTcgatcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2374003  44 -  4500979 TCGTCTCATGC-------------------AAACATGTC------------------------cctcagattttcagt-----------------------ttgatctg-------------------------------------------------a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213788  85 -  1189296 ---------------TCTATGCTTTTCGTAAAACAATCTCAAGTCTAAACATGAAATGC----TTTCTGAGTTTCTGT---------ATCATAACCAA---TTGGTCCC-------TCTTTCt------------------------------------
i caeSp111.Scaffold626  I 68 I 8
e caePb3.Scfld02_0       3913813 421 +  4147112 I
e caeJap4.Scaffold18213    27004 233 -   720316 I

a score=4005.000000
s ce10.chrX              5659479 50 + 17718866 AAAAAATTGTTTTCTGTAACCTTAATCTGTAGCTTCA-------------TTTTAGCAAAAAT
s cb4.chrX              10960787 41 + 21540570 aaaaaatca--------aactttctgaTTAAGCTTCA-------------TCTCcgc-aaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2374047 39 -  4500979 aaaagatCA--------ACTTTTC--ATtaagcttca-------------tttttgc-aacat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213881 42 -  1189296 ----attca--------aatctga-aatctAGCTTCA-------GTTTCATTGCTGC-AAAAT
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       3914234 49 +  4147112 ----AATCA--------AATCTTC-GAATTAGCTTCAtttcgcttttctttttttgc-aaaat
i caePb3.Scfld02_0      I 421 C 0
e caeJap4.Scaffold18213    27004 233 -   720316 I

a score=206744.000000
s ce10.chrX              5659529 378 + 17718866 TAATTGCAACGTGACAAT--ATCAA--TTTTGCAACCAC--------GACAATGCGC--CCCAAAAATAAAATCATGCAACTACCGCCAACTTAAG--------TGGAAAGGAATTTGTTTC---TTTTCTAATGT-CCTTTTTCTCTCTCACTGTGTGTCACGCTGAAAAAAATGGACAAGTAAACGGGTTCC------T-ACTCTTGCCCCCACCACCATCACC--------ACTCGAAGCC-------TC-----TCTTCACTAAAAAT---------------AGTGAGGGAGGTGCCGCCGG-CGAGACACAAAGGACGTTATGGTAGCCATTTGACCACAAGGTCGGGCATTGTCT--TCTTCTCATCT--CCCTCCGT----------------GTGTCTCAAAA---ATTTCAAT-----------------------TCGTAACCACGACGATTTTTGTACTCGAAACTGT---CACTGTTACTCCT
s cb4.chrX              10960828 389 + 21540570 tgataaaaacgtGACCGT--ATCAC--ATTTGCAACCAA--------AACGATGCGCGTGCCGAA--------------------GCCAACTTAAAAGTAAAACTTAAAAGGAATTCGTATC---ATTT------T-CTCCCTCCTCTCACGCTC------------TGAAAAATGGACAAGTAAACGGGTTTC------TGTCTGCCACCACGGT----TTTACCTATTTCTATTTGGAAGCCGTCTCCCTC--------------GAATT----------------GTAAGGGAGGTGCTGCCGG-TAACACACAAAAGACGTTATGGTAGCCATTTGACCACAAGGTCGGGcattgtct--tcttcttctctcatctcttacctcttcttcGTGGCAAgtgtctcaaaa---attgaattcgtgCTGATGCCTCTCCTTGCTATCGTCTCC---ACCGAATTTGTACTCGC-TCGAG---CGCAACAACTGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2374086 373 -  4500979 TGATAAAGACGTGACACT--GTCGCT-CTTTGCAAGCAA--------AACAATGCGc--cccaaaaataaaatcatgCAACGGCCGCCAACTTAAG--------TGGAAAggaatttgtttc---ttttctaatgt-cctctttctctcacact-------------gaaaaaatggacaAGTAAACGGGTTCC------T-TCTACTTCTCCCAC----TTTACC--TTTCTGTTTCGaagtcccccccccccctcttctTCACTTAAATT----------------GTGAGGGAGGTGCCACCGG-CGAGACACAAAGGACGTTATGGTAGCCATTTGACCACAAGGTCGGGCattgtct--tcttctcatcc--tcTCTca-------------------gtctcaaaa---attgaaat-----------------------tcgtGACC---ACGATTTTTGTACTCGCAACTGT---CACTGTTGCTGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    213923 367 -  1189296 TGATAAAGAATTGATACT--ATCGGT-TTTTGCAAC-----------AACAATGCGc--cccaaaaataaaatcatgCAACGGCCGCCAACTTAAG--------TGGAAAggaatttgtttctttttttctaatgt-cctctttctctcacactc-----------aaaaaaaatggtcaaGTAAACGGGTTCC------T-TCTTT--CTCCCAC-ACACTTACC---TTCTATTTCGAAGCCAC-----CC-----TCTTAACTAAAATTGT----------GAGATAGAGAGAGGTGCCGCCGG-CGAGACACAAAGGACGTTATGGTAGCCATTTGACCACAAGGTCGGCcattgtct--tcttctcatcc--cCTCTCAC----------TGCAAGGCGTctcaaaa---tttggaat-----------------------tcgtTACC---ACGATTTTTGTACTCGCAACTGT----------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3914283 391 +  4147112 tgatAAAGAATTGATACT--ATCGCTCTTTTGCAAC-----------AACAATGcgc--cccaaaaataaaatcatgcAATGGCCGCCAACTTAAG--------TGGAAAggaatttgtttc--tttttctaatgtccctttttctctcacact-------------gaaaaaatggacGAGTAAACGGGTTCCATTCTAT-TCTTCCACTCTCAC-ACGCTTACC---TTCTGTTTCGAAAGCATCTCTACC-----TCTCCACTAAATTT---------------AGTGAGGGAGGTGCTGCCGGCCGAGACACAAAGGACGTTATGGTAGCCATTTGACCACAAGGTCGGGCATTGTCTCATCCTCTCACTC--TCCCTCTC--------------ATGCgtctcaaaaatttgtgaatt-----------------------tcgTTACC---ACGATTTTTGTACTCGCAACAATTGTCACTGTTATTGCC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    27237 355 -   720316 TGATAACAGCGTGACAGTCAATTGG--TTTTGCAGCCAACCATCTACAACAATGCGC--CTCCAAAA-ATAATCATGCAACGGCCGCCAACTTAAG--------TGGAAAGGAATTTGTTTC--------TAATGT-CCCCTTTCTCTCACA---------------TAAAAAATGGACAAGTAAACGggttcc------t-cttttt------------tttttc---ttctatttcgAAGCC-------CT-----TCAcgagaaaaagaggaagagagagagaaggtGAGGGAGTTGCCGCCGG-CGAGACACAAAGGACGTTATGGTAGCCATTTGACCACAAGGTCGGGCATTGTCT--TCTTCTCATCC--TCTCTTA------------------------AAGA----------T-----------------------TCGCAacg---ctgatttttgtacttgcAACCAA-----TTGTTGCATCT
i caeJap4.Scaffold18213 I 233 I 389

a score=16619.000000
s ce10.chrX              5659907 177 + 17718866 CCAA-CAAACACCATTCAACA----CAAAATGACCGTGAACACAATGATGAGCGACTTGGAGAAGAATTGTGTGGCAGCAGAAT----------GAA-----GAAACATCCCTAAATTGTGTGAAAACGATACAATGGGAC-----------AAGCG----CGTTGCTTAACGAGACCCTCG-GTTGCCAATGACTGTTCCATTTGTTTTCTA
s cb4.chrX              10961217 184 + 21540570 AC---CAAATTTCGAC--ACT----GAAGATGACCGTGA--ACAATGAAAAGTGACATGGGAG--------------GAAgaataggggggggggggatgaTGAGACAACTTGAAACAGTTTGAAAAGAACAGATAGAAAACAAGCAAGAA----TGTAGCAATTGTCTAATTGGCGCCTAGTGGTCATTGTGACATTTCCAATCAAATtcta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2374459 176 -  4500979 ACAAACacattcagaa---------gaaaatgacCGTGAACACAATGAGGAGTGACTTGGTAG-------------AGAAGAAT----------GAGTAGATGAaacaacttgaaacagtatgaaaacaatatattgagaagaagagataaCAAGCGTGAAAACTG-CCAATGGG----TTGTGTGGCTAGTGGCAGTTCCaattatgtttca
i caeRem4.Crem_Contig0  C 0 I 278
s caeSp111.Scaffold626    214290 151 -  1189296 -----CAAACATAAGA-GACA----CAAAATGACCGTGAACACAATGAGGAATGACTTTAgaa---------------aagaat----------gga-----gaaaCATCCCTAAAC--TGTGAAAACGATCTAATGAAAG--AGGAACAACAAGCG----------TTAA--------AGGCACCGGGATTGACATCTTCAACGATTACCCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3914674 170 +  4147112 AC---CAACGACAAGT-GACAGCGGAAAAATGACCGTGAACACAATGAGGAATGacttgagaagaaa---------agaaggat----------ggA---GGGAAACATCCGAAAACGGTGTGAAAACAACTAAATGGGAG---GCATTGACAAGAC----------TAAATGAC----AGGCGTTGCCATTGACAGTTCGAATTAATTTCGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I

a score=-39061.000000
s ce10.chrX              5660084 285 + 17718866 -------------------------GTTTTACCAT-------TGGT---TCTGTAC---AATACCGTTTTCATGTTAATTTAGTTGTCCCGGAGTAACAAATTTATT-ATTGATCTCAAA--------CT--------------------------------------GTTACGC-----TTTAACATTCAACAAATTTTATAAATTTGAAGTTGTATTTGTATCCTTAA-ATAAATCGTTGAAACTTCTATACCTA---------TTTTTAATTTTTCTCTCTCTAA----CGTGAAATTGATATCAAATTGTAAATCCAGCTTTGGTGTTTTTGCCTTAA--------AATTTTTTT-TATATGATTAAACTAACAAGACAATAGTTTTAGAAA--AT
s cb4.chrX              10961401 286 + 21540570 ataacatttttttaaactttagtCAGGTTCATTGTACG----TTGtctaatttttcatttgttccgttttcgtt----tttgatttttgc-aagaaaaaaactaatcaaTTG----------------TT--------------------------------------ATTTCTAATTAGTT--------------TCTAATGactttgaaaacaaaactttaCAGTGTAGATGATT----GGAGATTCCTTT-------------TTGTTAAT-----------CAATGCATATTAAattgaaactagaaaaaaaatatattttttcagtttttg----ataaagaaaaaattacttt-taaaaaaccagattcttaaaagaattttttctaaag----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    214441 153 -  1189296 --A---------------------------------------TAGT---ACTTTTC-------------------------GGTT--------GAAACACGGGGGTTCATTG----------------TTCG------------------------------------GTtactt-----tt--------------tgtcttcttctt------------ctatcttATC-ATGA-------------------------------TTGTTGTT-----------GAA--------------------ACAAATTAATCAATTGATTGAACAATTA--------------AACTTTATTCGTAAAAACCAACTG------ATTACTTTCACCGCAT----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3914844 311 +  4147112 --AATCCTTCTTCCGGCT------GGGTTCATTGTacttattttgt---atttttc------tctgTTATCA--------TGATTGTTG--AAGAAACACACTAATCAATTGATTTAACAATCAAACTTTCGTTTTTGTATAAACCAATTGTCAGATGagattgatttgtttttc-----tt--------------tctgttgtttttgaa---------ctATCATTTC-ATGAAT-------CATTCCATAAAAGGGAAAAGAGTTATTAGT-----------TAA----TATTGTAT---GACGCACAAAATAATCTAATATAGGAGTAGTTACTGTATGCAcaatgaattttatt-gaaaacaacaactg-----aaaaactgtttttgaaaat--
i caePb3.Scfld02_0      C 0 I 106
e caeJap4.Scaffold18213    27592 389 -   720316 I
e caeRem4.Crem_Contig0   2374635 278 -  4500979 I

a score=-4495.000000
s ce10.chrX              5660369 67 + 17718866 TTACTCTAAGCCAAGAAGTGCGCAGCTTAAAATAGGTTTTCAGCTCATTATATAGTTGCGACCTTAT
s cb4.chrX              10961687 55 + 21540570 tcagttt----caaaatgttatgAATTGAACATA----TTTATCTCAAAACGGAG----AATTTTga
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    214594 22 -  1189296 TTATTTT--------ACGTT-TTAATTGAAA------------------------------------
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       3915155 106 +  4147112 I
e caeJap4.Scaffold18213    27592 389 -   720316 I
e caeRem4.Crem_Contig0   2374635 278 -  4500979 I

a score=-41978.000000
s ce10.chrX              5660436 274 + 17718866 -GAAATAAATAAATTACTAATCGTCCATACCTTGGTTATTTTTAG--------ATTTTGTTTCCAATTTCCATACGTATTGCTTATTCAAAAAGCCGATCCGTTCCTCAAAC----------------------------GTGAAACACTGCGGATT--TGAG--------------------AGTAATCCAG--CATTCCAGGTGCTACCGCGAATGATAACATTTTTCTTAAATAATGATAACT-AGAATGATAACATTTTTCTTAAATATAAAAACCTCA--------------------TCAATTTCAAAAGTTACTGTTGAA----------------------------------------------------------AGGTAATCATTAATTTTGGA--CTATATAAT
s cb4.chrX              10961742 266 + 21540570 ggaaacattgaaaatcctgaatttctgggtttttttcattccttt--------aaatttttctgaaatatcttA------ACATAGTTA-----CCGGCCTGTATTTCAAGA---------------------------------ATATAGTCAAATACTCAC--------------------AGTAATCCGTCTCAGCAAATATATAAACCC--------ATCTTCCTTTTCAAACGTTCAATCTACACTTGATTATTTTCCT-----AAATaaaaacaccaattgaaacaatcaccacaatttatttttaaaattttttgaaaat-----------------------------------------------------------------tacacattttaGGAGCTCTACAAT
i cb4.chrX              C 0 I 65
s caeSp111.Scaffold626    214617 137 -  1189296 -AATAGAAACAA--TACTGTCCTTTCGTCCTTTC----TTCTGTT-------------------AACTGTCACG------ATCCGAT-------------CAATATTAAATA-----------------------------TGAAATGATCTAAACTTCTCAA--------------------------------CAACTTATATTTTA---------------------------TGTTATG------------------------------------------------------------------TCGAAAGCTTAGGAAGAA--------------------------------------------------------------------------------CAGTacaat
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3915261 369 +  4147112 -GGTTCAATCAAATTACCGGTCTTTTAAAATTACGATGTTCTGTTAGGCAAGCTAGTAGTTTAGAGCCAtcgaa------atcaatttg-------aatccaaatttcaataaacttACAGTTGTAGTtacttgacttttttgaagaaatgttggCTCCTGAAATTACGCGTGAGTTTTATGGAGTAATAGGTTTTAGTTCAGACTGTAATGC---------TGTATTTAACTAAttgttatgatt-tttttgaagacattCTC-----ACAGAAAACCAGGAAATGG---------------CTATATTTGAATGCTTATGCAGAAAATTTGAGATGTCCCACTGACAAATCATTTTGTCTTGTTATGTGAATCACATCCAGTCAG---ATCTTCTTTATCGGGTGCAACCCAAT
i caePb3.Scfld02_0      I 106 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I
e caeRem4.Crem_Contig0   2374635 278 -  4500979 I

a score=-8840.000000
s ce10.chrX              5660710  48 + 17718866 TC----------------------------------------------------------------------------------------------------CAAATTTTAAATATC-----------AAAATGATTCCAAACACACAACATTTCCAAC
s caeSp111.Scaffold626    214754  20 -  1189296 tg-----------------------------------------------------------------------------------------------------aattttcgattaCC--------------------------------------GTAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915630 158 +  4147112 TGAAGGTTGATCAGATTTTAGTGATACCAGTTAAGAGGATCTGATTATTGAACATTGTTTCAGGAAAGGGACTAAGATTCgagaaaataactttttgtttcccaattttcaattatttgagACATTTATCAATGATTCCAACTA-ATTTCATCAAATGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I
e cb4.chrX              10962008  65 + 21540570 I
e caeRem4.Crem_Contig0   2374635 278 -  4500979 I

a score=-2319.000000
s ce10.chrX              5660758 24 + 17718866 TTTGCATCCTAAAACTCACCGAAC
s caeRem4.Crem_Contig0   2374913 24 -  4500979 TTTGCATTTTGGTGCTCATCTTAA
i caeRem4.Crem_Contig0  I 278 C 0
s caeSp111.Scaffold626    214774  9 -  1189296 CTCTAAACC---------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915788 24 +  4147112 TTTGAATTCGTTCAGCTCTCCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I
e cb4.chrX              10962008 65 + 21540570 I

a score=-1389.000000
s ce10.chrX              5660782 12 + 17718866 ----ATACCAGTTTTC
s cb4.chrX              10962073 12 + 21540570 ----atactagttttt
i cb4.chrX              I 65 I 34
s caeRem4.Crem_Contig0   2374937 12 -  4500979 ----ATTCTAGAttct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    214783  6 -  1189296 ----ACTCGA------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915812 10 +  4147112 AACAACTTTA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I

a score=-5555.000000
s ce10.chrX              5660794 21 + 17718866 ---------------------------------------AAAACATTTGTATCAAACTAA-
s caeRem4.Crem_Contig0   2374949 32 -  4500979 --attc---------------------------tgaaatttgaaattgttaaaGAAACTAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    214789 33 -  1189296 AAAGCC---------------------------TTACGTCATTGATTTCTATCAAATCGA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915822 60 +  4147112 AAAACTACCAGTTCCCGCACCCCTCCTCTTCAATTATTCCAGTAACTTCTATCAAAACAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I
e cb4.chrX              10962085 34 + 21540570 I

a score=-1126.000000
s ce10.chrX              5660815 9 + 17718866 TAGCAACTG
s cb4.chrX              10962119 9 + 21540570 TATCCAATT
i cb4.chrX              I 34 C 0
s caeRem4.Crem_Contig0   2374982 9 -  4500979 CAcactttt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    214822 8 -  1189296 -AACTGAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915882 8 +  4147112 -AACCAAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    27592 389 -   720316 I

a score=28944.000000
s ce10.chrX              5660824  88 + 17718866 TTTGCG-CTTCCGCTTTCTAT-ACTGTCTATT-------CATGTTTTACGCTGTAAACTGCTGA----AATACCTCCCAATTCTTGTACTT-------TTCTGTCT--TC
s cb4.chrX              10962128 101 + 21540570 TTAATG-TTTCCGTTCTCGAGTACTGTC--CCTCGACCTCTTGTTTCGTGTTGTAAACCTCTAA---ATAGACCACCCGATTctaacacttctga---tatttttttatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2374991  92 -  4500979 ttaatg-tttccGCTCTTGAA-ACAGTC--CC-------CTTGTTTCACGTTGTAAACTTCTGA---AAAGACCACCCGATTCTCACACTTTCGA---CGCTTTCCT-CA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    214830  92 -  1189296 TCAGTATTTTCCACTACAGCT-AGTGTC--TT-------GTTGTTTCATGTTGTAAACTTCAAAAGGAGAGGACACCCAATTCTTGCACTCA------TGTTTCCT--TC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915890  97 +  4147112 TTAATG-TTTCCGCTCTTGTT-ACTGTC--CT-------CTTGTTTCATGTTGTAAACTTCTGA--GAAAGACCACCCGATTCTCACACTCACTAACTTTTTTCCTCGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    27981  79 -   720316 TTCACG-CAGCCGCTCCC-AT-ACTGTC--CT-------------TTATGTTGTAAACT-CAAA---AAAGACCACCCATGTCTTGCGCTC-------TTCTTTGT--TC
i caeJap4.Scaffold18213 I 389 I 178

a score=21768.000000
s ce10.chrX              5660912 227 + 17718866 GTTGACCAATTG--CGCTTATCTTCAAATCAGTTCCAA------CACTTATTTGTTTCTTATGTACGGTAACTTTTTTTTTCTTTCGAGCCACC-------------TGCATCCCTAAGTTTTAGCCCTTTAATGTCCA---GATAAGTGTTATCCTGTACGACAAC-TTAAAAAAA--------GGATCAGATAAAATATAG-TGGTATCTTGAAGTCTCTATAAATCTATTGTCTCTATTA--------GTTTTTAAGACGCTTC-TT
s cb4.chrX              10962229 205 + 21540570 tttgaccaattc---------------------taaaa------ttatatACT-----------AACAAGTCCCTCTTTTATTTTTGGTCCcct-------------agaaaatttcgaaaatc----tttcaCGGCT----TACAACCACTATACTTTGC----CCAATaaaaaaaaGACTGATGGAACAGATAAGATGAAG-CGGTATTTTGAAGTCTCAATTAATCTATTGTCTATATTGGCATTCGGATTCATAAGAGACTTC-TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2375083 218 -  4500979 TTTGACCAATTT---------------------CTACA------TCACATTTT-----------AAACTGACCCTTTCTTGCTTTTAGCCCCTTTATCATTCAAATCTGAAGACGTCTGGATTG----TTGTATGCCTA---TCCTGCCAgtctacttttt----tc-ttcaaaaaatgaatgaaggaTCAGATAAGATGAAG-CGGTATCTTGAAGTCTCTATTAATCTATTGTCTCTATTAGCATTGGCGTTTTTTAAGAACTTC-CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    214922 230 -  1189296 TTTGACAAACTTTCTGTTTTACTTCCAGTTAATCAAAAGGTTTTCAACAATTGGTTTT-----CAATGGTTCCCTCTTTATCATCT--TCCC---------------AACCAAACCGAATCTCA----GCTTATGCCTA---TCCTGcctttctacttttt----tc-ccaaaaaaaaggc----GCATCAGATAAGATGAACAAGGTATTTTGAAGTCGCTATTAATCTATTGTCTCTATTAGCATTTG-CTTTTTAAGCAGCTTC-TT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3915987 211 +  4147112 TTTGACCAATTCTATAT---------AGTAAAACCAAA------TAACATTTTGT---------AATTGTCCCCTTTTCCACATCTGATGCT---------------AGAAAGTCTAAAAAGGA----TTGTATGCCTGTTCTTCtgtcattctatttttt--tatc-CCAAAGAAGATG-----GCATCAGATAAGACGCGT-AGGTATTTTGAAGTCTCCATTAATCTATTGTCTCT-TTGGC------TTTTTTAAGCAGCTTCTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    28060 178 -   720316 I

a score=489578.000000
s ce10.chrX              5661139 572 + 17718866  
s cb4.chrX              10962434 575 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2375301 546 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 573
s caeSp111.Scaffold626    215152 574 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3916198 571 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    28238 541 -   720316  
i caeJap4.Scaffold18213 I 178 C 0

a score=1000.000000
s ce10.chrX              5661711 1 + 17718866 C
s cb4.chrX              10963009 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    215726 1 -  1189296 C
i caeSp111.Scaffold626  C 0 I 390
s caePb3.Scfld02_0       3916769 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 551
s caeJap4.Scaffold18213    28779 1 -   720316 C
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=-629.000000
s ce10.chrX              5661712  8 + 17718866 G--CTGAATA
s cb4.chrX              10963010 10 + 21540570 TGCCAGGATA
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213    28780  8 -   720316 --GGtagata
i caeJap4.Scaffold18213 C 0 I 247
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=-1282.000000
s ce10.chrX              5661720 268 + 17718866 TATATCTT----TTGTACTCCGATTGATGGAGTTTCAGCGATTTGGGTCACTGCCACCGATTTGGCCAATGGTACTTGAAACATACTAGCTGTTGATGTAGTAATGAACTTTGTAATAGGTACCTTCCAACTAAATTTGATTTA--TAGTGTGTTCCTTACTAATGAATATAA--CAATCTCTTCTGCTAACATCGAGCATTTTCATGCTCCAAGACAGTTCAC-CATAACCCTAGAGCTGTTGTTAAAAGTTTTTCATTTTACA-TTTGTGGTATTT
s cb4.chrX              10963020 239 + 21540570 TCTAGGCTGAAACTTCATTCCG-CTGATGGTTTT----CGCCTTTCTACAGTACC-CAGACTTCTCGAACTAGACTCCGAACGCA---------------------ACCTACAAAATACATATACTCCGTTCGGACCttattgggttactgtagtttctgctTTTGAAGTTCATCCAAT------TGTTAacattgtcaattt------ttcgagcCATCTAATGCATCGGATTAAATCTGTTGAGAAAACCTATGCATCGGacaggttactgtattt
i cb4.chrX              C 0 I 91
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=0.000000
s ce10.chrX              5661988 100 + 17718866 CATTAGCATTATAGGCTCTTATATCCTCTAGACTCATAGCCAAACTAGCACAACCTGTAAAAAAATTGGTAAGTTCTGATTTTTGGAGTAAAAACCTTAA
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e cb4.chrX              10963259  91 + 21540570 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=232.000000
s ce10.chrX              5662088 123 + 17718866 AAGTATGTTCTTTTTGAGTTAT--GAATGTCATAAATCTTGAATTTATCAGGG-------AGCGATAAT-TTTGCCAGCTATGAGACATAAGAAAAACCTCCAATAGTAATTTTTCATATCAACTTGTAAGAA
s cb4.chrX              10963350 109 + 21540570 AGATGCATTacttttgggttactgtaatttcaaaaa--ttagaactgTCGAGTTATTGCCGGTGAAAATGTTCGCCG-----GAAACATAG-----------------AATTTACCGTATTGGGTCTAAAGAA
i cb4.chrX              I 91 I 89
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=0.000000
s ce10.chrX              5662211 103 + 17718866 CATAAACATTAGTCACATCACGCGTTGTGCAACAGTATTTGAGTTTGCTTAGAAAATCGGAATACTAAATGTCTCAATCTCAAATTCAAGTTCAAGCATAGAT
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e cb4.chrX              10963459  89 + 21540570 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=-2243.000000
s ce10.chrX              5662314 472 + 17718866 CTAAAATTTTAACATTTCGATGTGTTTTTTCAGTTCTTGTGTTTTTAACAATTCTAAATATGCAAACCTATTTAATTTACCTAGTT--ATTCAGGGTGGTTAATAACTGTGTAAGTTCACTTGTTTTAATATCTCGTTCCAAAAACAGAAACGTTGAGTTACTGCAAAGTGGTCGCCATAATTATGGGCGACTCTGTATATTCTTGAACTAGAAAACCGTATCTTTACGGTTTCATTTGTGATAGCCTTTTGACCTTATTTTATATAGACTTATATAAGAGTTCGTATACTCTAGGATTTTGTTGTATGTAGTAACTAAGATTTTTTTTAATATTCCAAGTTCCTAGATGTCATAACCTCTCACTATAGTTAGAACTTTTTGGCCTACTTAAAATTTCTAGGCTATATTGAAATACAATTTCAGTGTGTTTCA-ATATTCTTTACTGT--CAAAAGCTAAAATGTCCACCTAAAATA
s cb4.chrX              10963548 352 + 21540570 caaaaagtttgtcagttcaa----------aaatttttatatctttcacag---------------------caattgacataattgagctcaaagtg------aacggtttggatgggc----------------ttcaattagaggaaatgtggaagtttcagaaaat--------tattttcagacgaatcttt-catttttgatatagATTAggagaactt----------ttaaaaatatttttctga-ctaATTCAATATTGa--gatattggaatttttat----ttaaatgctattctggttaat--------ttcattttgata-------tttttgaatttc---------------------gattttttttccaatattaaGCTAAAGATCTATCGTAAAGTACCATAGCGGAGCATACCACGCATTTCTTACAGTTCCAggtgctaccgtaacc----------
i cb4.chrX              I 89 C 0
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=0.000000
s ce10.chrX              5662786 1 + 17718866 C
e caePb3.Scfld02_0       3916770 551 +  4147112 I
e caeJap4.Scaffold18213    28788 247 -   720316 I
e cb4.chrX              10963900 0 + 21540570 C
e caeSp111.Scaffold626    215727 390 -  1189296 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=4182.000000
s ce10.chrX              5662787 32 + 17718866 ATTATGATTGATTC---CCGTCCTCGTATTGCGAT
s cb4.chrX              10963900 30 + 21540570 --tgcgATTG-TTTCCgtcaattttattt--caat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    216117 31 -  1189296 ATTGTGATTG-TTC---TCAACCTCATCTTACGAT
i caeSp111.Scaffold626  I 390 C 0
s caePb3.Scfld02_0       3917321 31 +  4147112 ATTTCAATTG-TTC---TTAACCTCTTCTCGCAAT
i caePb3.Scfld02_0      I 551 C 0
e caeJap4.Scaffold18213    28788 247 -   720316 I
e caeRem4.Crem_Contig0   2375847 573 -  4500979 I

a score=27729.000000
s ce10.chrX              5662819 37 + 17718866 GCCCTCTTAGTCTATCATAAATGCATTT-CCGAATCTT
s cb4.chrX              10963930 38 + 21540570 gCCCTCTTAGTTCATGTTAAACGCATTTCCcgaatcat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2376420 37 -  4500979 GCCCTCTTAGTCTATCTTAAACGCATTT-CGGAATCTT
i caeRem4.Crem_Contig0  I 573 C 0
s caeSp111.Scaffold626    216148 37 -  1189296 GCCCTCTTAGTCTATCTTAAACGCATTT-CCGAATCGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3917352 37 +  4147112 GCCCTCTTAGTCTATCTTAAACGCATTT-CCGAATCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    28788 247 -   720316 I

a score=282562.000000
s ce10.chrX              5662856 392 + 17718866  
s cb4.chrX              10963968 485 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2376457 403 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    216185 418 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3917389 410 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    29035 390 -   720316  
i caeJap4.Scaffold18213 I 247 I 176

a score=15442.000000
s ce10.chrX              5663248 96 + 17718866 GTTTTCTCCCTCTCTCTTCTTCTCTTGGTTCAAAGTTTGTTGTCTGAAAT-TGCCAGTTCAATTGGGTCACCATGTCTGAAACTAGTGACCAATGAA
s cb4.chrX              10964453 69 + 21540570 GC--------------TTTTTCCATTAGTTCAAAGTTC----TTGGGCATCAACTAGGGGGTC----------AGTCTGAAACAGGTGACCAGTTGA
i cb4.chrX              C 0 I 30
s caeRem4.Crem_Contig0   2376860 74 -  4500979 GC---------------TTGTCGATTAGTTCAAAGTTC----TTGGCTGT-AACCAGGTCAACCA---GCCAAAGTCTGAAACAAGTGACCACTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    216603 72 -  1189296 -----------------TCCTGGTTTGGTTCAAAGTTC----TCGGTCAT-AACCAGGTCAGCAG---CCAAATGTCTGAAACAAGTGACCAGTCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3917799 63 +  4147112 ----------------------GGTTGGTTCAAAGTTC----TCGACGCT-AACCAGGTCAG-------CTAAAGTCTGAAACAACTGACCAGTCCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    29425 176 -   720316 I

a score=1092.000000
s ce10.chrX              5663344 21 + 17718866 ATTTCGTGAACAGTCC-------AAAAC
s caeRem4.Crem_Contig0   2376934 18 -  4500979 ---AAGAGAACAgtaa-------aagga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    216675 25 -  1189296 ---TGAAGAACAgtaaaaaagggaaaag
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3917862 19 +  4147112 --TTGAAGAACAGTAA-------GAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    29425 176 -   720316 I
e cb4.chrX              10964522 30 + 21540570 I

a score=1820.000000
s ce10.chrX              5663365 2 + 17718866 AA
s caeRem4.Crem_Contig0   2376952 2 -  4500979 aa
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    216700 2 -  1189296 aa
i caeSp111.Scaffold626  C 0 I 28
s caePb3.Scfld02_0       3917881 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 I 38
s caeJap4.Scaffold18213    29601 2 -   720316 aa
i caeJap4.Scaffold18213 I 176 C 0
e cb4.chrX              10964522 30 + 21540570 I

a score=138815.000000
s ce10.chrX              5663367 569 + 17718866  
s cb4.chrX              10964552 616 + 21540570  
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   2376956 613 -  4500979  
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    216730 576 -  1189296  
i caeSp111.Scaffold626  I 28 C 0
s caePb3.Scfld02_0       3917921 614 +  4147112  
i caePb3.Scfld02_0      I 38 C 0
s caeJap4.Scaffold18213    29603 632 -   720316  
i caeJap4.Scaffold18213 C 0 I 26

a score=-4744.000000
s ce10.chrX              5663936 28 + 17718866 TTGTGAGCACTGTTTTGCTTTTTCATTG
s cb4.chrX              10965168 16 + 21540570 CT----ACCGAGTTGtgtta--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2377569 14 -  4500979 tc----aatgTCTTTTGT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    217306 20 -  1189296 ttttcaacactGTAATGCTC--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3918535 16 +  4147112 GT----ACAGTGTATTGCTT--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    30235 26 -   720316 I

a score=-16844.000000
s ce10.chrX              5663964 62 + 17718866 AAATAACAAAACAAGTAGAACAAGTATTTGCACCAGCAAGCATCTGGTAAG----TATTCTCTTCC---------
s cb4.chrX              10965184 30 + 21540570 ------aaaaataag----------aac--aaGTTGTA------------------CTAGTTCTGT---------
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig0   2377583 54 -  4500979 ------AAAAACAAGTAGAACCAGTAAC--AGCTTGCAAACATCTGTTCTT----TTTGGCTTTGT---------
i caeRem4.Crem_Contig0  C 0 I 30
s caeSp111.Scaffold626    217326 46 -  1189296 -----GAAAAACAAG---------TATC--GCCCATTGAACATCTGCTATT----TCCTCTCTTTG---------
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3918551 33 +  4147112 ------AAAAACAAG---------TACC---------GAACATCTGCTCTT----TTCCCC--------------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213    30261 52 -   720316 ---------------------GAATAAC--AGCTTAAGCACATCTGTCATTGAAGTCTGGTACAGCTACCAACCA
i caeJap4.Scaffold18213 I 26 C 0

a score=-4499.000000
s ce10.chrX              5664026 36 + 17718866 TCACCAACTTTACTTTTCT----CACACTTTTGCCTATAT----------
s caeRem4.Crem_Contig0   2377667 21 -  4500979 -------------------TCTGCAAACTTTATGTTCTTA----------
i caeRem4.Crem_Contig0  I 30 I 15
s caeSp111.Scaffold626    217374 35 -  1189296 CCACCAC-----CGTTCCCTGAGCAAACTTTTGCTTGCTT----------
i caeSp111.Scaffold626  I 2 I 12
s caePb3.Scfld02_0       3918586 37 +  4147112 GCAcctcttttttgttccttgTGCAAACTTT---CCATTT----------
i caePb3.Scfld02_0      I 2 I 12
s caeJap4.Scaffold18213    30313 30 -   720316 --------------------TTGCAAACTTTGCTCCACTTTTacttctct
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10965214 64 + 21540570 I

a score=219947.000000
s ce10.chrX              5664062 430 + 17718866  
s cb4.chrX              10965278 489 + 21540570  
i cb4.chrX              I 64 C 0
s caeRem4.Crem_Contig0   2377703 414 -  4500979  
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626    217421 400 -  1189296  
i caeSp111.Scaffold626  I 12 C 0
s caePb3.Scfld02_0       3918635 413 +  4147112  
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold18213    30343 409 -   720316  
i caeJap4.Scaffold18213 C 0 I 249

a score=476.000000
s ce10.chrX              5664492 1 + 17718866 C
s cb4.chrX              10965767 1 + 21540570 C
i cb4.chrX              C 0 I 977
s caeRem4.Crem_Contig0   2378117 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    217821 1 -  1189296 C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3919048 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    30752 249 -   720316 I

a score=1325.000000
s ce10.chrX              5664493 4 + 17718866 CATA
s caeRem4.Crem_Contig0   2378118 4 -  4500979 AATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    217822 4 -  1189296 CATA
i caeSp111.Scaffold626  C 0 I 37
s caePb3.Scfld02_0       3919049 4 +  4147112 TATA
i caePb3.Scfld02_0      C 0 I 224
e caeJap4.Scaffold18213    30752 249 -   720316 I
e cb4.chrX              10965768 977 + 21540570 I

a score=368.000000
s ce10.chrX              5664497 55 + 17718866 CTCTATTCAGCTTGAGCTTCA-AGGGAGAAACATGCGAGT----GATCATTGACATACTT
s caeRem4.Crem_Contig0   2378122 60 -  4500979 TTGGGACCTTTCTAAAATTTACAAAGAGAAACATACATGGAGAAGATCATTGAGCTAATT
i caeRem4.Crem_Contig0  C 0 I 117
e caePb3.Scfld02_0       3919053 224 +  4147112 I
e caeJap4.Scaffold18213    30752 249 -   720316 I
e cb4.chrX              10965768 977 + 21540570 I
e caeSp111.Scaffold626    217826 37 -  1189296 I

a score=0.000000
s ce10.chrX              5664552 1255 + 17718866  
e caePb3.Scfld02_0       3919053  224 +  4147112 I
e caeJap4.Scaffold18213    30752  249 -   720316 I
e cb4.chrX              10965768  977 + 21540570 I
e caeSp111.Scaffold626    217826   37 -  1189296 I
e caeRem4.Crem_Contig0   2378182  117 -  4500979 I

a score=1223.000000
s ce10.chrX              5665807 42 + 17718866 CTTAACTTTTTTTTCATAAACTTATCACACAACAATTCTTCG
s caePb3.Scfld02_0       3919277 40 +  4147112 CTTAGTTATCTTTTGATA--CTTAACGGATAGCAATTCATCT
i caePb3.Scfld02_0      I 224 C 0
e caeJap4.Scaffold18213    30752 249 -   720316 I
e cb4.chrX              10965768 977 + 21540570 I
e caeSp111.Scaffold626    217826 37 -  1189296 I
e caeRem4.Crem_Contig0   2378182 117 -  4500979 I

a score=1188.000000
s ce10.chrX              5665849 31 + 17718866 ---CAAAACACTACAATCGAACATCATTCCTGCT
s caeRem4.Crem_Contig0   2378299 27 -  4500979 ---CAGAACATTGCAAC---ATATTCTTCC-GTT
i caeRem4.Crem_Contig0  I 117 C 0
s caePb3.Scfld02_0       3919317 28 +  4147112 TGACAGAACATGCTAAC---AAAT--TTCC-GTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    30752 249 -   720316 I
e cb4.chrX              10965768 977 + 21540570 I
e caeSp111.Scaffold626    217826 37 -  1189296 I

a score=9533.000000
s ce10.chrX              5665880 57 + 17718866 CATCAAACATCTGCGCTGTCCCACTGTCCCAGTGTCTCATCGCTCGTCAAGCCTATC
s cb4.chrX              10966745 37 + 21540570 CATCAAACATCTG-------CCGCAGT-------CCTAACCACTCATcaa------c
i cb4.chrX              I 977 C 0
s caeRem4.Crem_Contig0   2378326 40 -  4500979 CATCAAACATC---------CCGCCG--------CCTCGTCACTCATCAATCccatc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3919345 40 +  4147112 CATCAAACATC---------CCGCTG--------TCTCATCACTCATCAATcctatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    30752 249 -   720316 I
e caeSp111.Scaffold626    217826 37 -  1189296 I

a score=2718.000000
s ce10.chrX              5665937 4 + 17718866 AACA
s cb4.chrX              10966782 4 + 21540570 aatg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2378366 4 -  4500979 aaca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    217863 4 -  1189296 AACA
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       3919385 4 +  4147112 aaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    30752 249 -   720316 I

a score=65599.000000
s ce10.chrX              5665941 288 + 17718866 TTTTTTGTCCC-----AAACTA-AAAGTGCA--------ATGAGAGCTCCATTGTATT----GCACG----------AAAAGTTTCTCAGTTTCTCA------AAAAGTGTGACATCGAGA-------------------GAAAA----AGAGCAC-CG-TTGTTTCG---AGG-----TTCAGCCGCCACAA-----------GAGCCAGTTGTC----------------ACCGGC----------GCCCCGGATA----CAC----------GGAACAAAGCCATGAGACGTATGTTCTATTAGGTGT--TC------AACTATTGCTAAC-------CTGTCACCTGCCCCG---AC----ATTATTTGAT--TATCTATTGTCTCG-TTAATTGATGGTAAGTAGAGTGTG--TGACAC----------------C-TTGAGAAA
s cb4.chrX              10966786 364 + 21540570 tttttttcttcggt--tGCTTC-TTAGTGCA--------A--------CCATTGTATCCGAGGTTCG---------CCATCCTCTCCCGACATTCTC------AAAAGTGTGACATCGAGAAAAGATAGAGAGAATGATGGAAAC---AGGAGCAC-cgtttgtttcg---aaaaatgttgcCGCGCCCCTAACAGAGGGGACCGCGCCAGTTGTCCCATCGCGGAGTGGggattgagaaaaagagacactCCGAATATCCTCCC----------AGAACAAAGCAA---------TTTTCAATTAGGTGT--TCATCGTGTCCTATCATCAATTCAGATCCTGTCACCTG--TTG---AAACCGCAAAACTGAT-A-ATCTATTGTCTGCTAAAATTAATGGTAAGTGAAGTGTGAAGAACTT----------------C-TTGAGAAA
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   2378370 289 -  4500979 ttttttgtctc-----tAACCT-AAAGTGCA--------AC-TCAGTCCCATTGTATT----GCTCGAAGAaagtttcatcttttttc-----tctc------aaaagtGTGACATTGAGA-------------------GAAAC----GGAGCACACCGTTGTTTCG---AA------TTCCGCCGCCACAA-------------GCCAGTTGTC----------------ATCGGGA---------GCCCCGGATA----CAC----------GGAACAAAGCCATGCGACGTGTGTTCAATTAGGTGT--TC------TTCTATTGCTAAT-------CTGTCACCTG--TCA---GC----CCAATCTGAG-ATATCTATTGTCTTC-GAAATTGATGGTAAGTTATGTGTG----ACAC----------------C-TTGAGAAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    217867 307 -  1189296 TGCTTAGTTTCAACTAGAACTTCAAACTTCG--------AGGTTGATATCATTGTATT----GC------------ACAaagtttctcgttttcttc------aaaagtgTGACAttgaga---gggagagaga------gaaacagaaagagcAC-CGTTTGTTTCG---AG------TTCTGCCGCCACAA-----------GAGCCAGTTGTC----------------ATCGG-----------GCGCCGGATA----CAC----------GGAACAAAGCCATGAGACTTCTGTTCTATTAGGTGT--TC------ATCATTCGCTAAC-------CTGTCATCCG--TCGACCAC----GTCATCTGATTATATCTATTGTTTTGGAGAATTGATGGTAAGTTGAGTGTG----ACAT----------------C-CTGAGAAT
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       3919389 297 +  4147112 ttttt--tctcggctCTAACTT-AAAGTGCA--------ATGCTCAAGCCATTGTATT----GCTCG---------AAAGAGTTTCTCTGTTACTTC------GAATGTGTGAcatt---------gagagaga------gaaac----agagcac-cg-ttgtttcgaaaag------ttctgCCGCCACAA-----------GAGCCAGTTGTC----------------ATCGG-----------GCGCCGGATA----CGC----------GGAACAAAGCCATGAGACTCCTGTTCTATTAGGTGTTCTC------TTCATTTGCTAAC-------CTGTCATCTG--TCA---AC----GTCATCTGAT--TATCTATTGTCTTGGAGAATTGATGGTAAGTTAAGTGTG----ACAC----------------CTTTGAGAAA
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213    31001 279 -   720316 tttttcgttcga----tgTGTA-AAAGTGCATCTTGAGGAGTCCCAAGCCATTGTATCTA--ATCCG---------GAAGGttgcttctatttttttgtttgaaaaagtgtGACACACAGA-------------------GAAAG---AAGAG-------TTGTTTCG---AA------TGTTGCGGTGGCAG-------------GTCAGTTGTC----------------ATCG------------GCACTGGATA----CATTTGCTTTCTAAAAACGAGCTCA--------GTGTTCTATTAAGTGT--TC---------------TGTT-------CTATTTCCTA--TTG---TT---------CTGCG---------------------TGGATGGTAAGTTGCATGTT----GCTCAGCATGTCAGTGTGTGC-TTACCAAG
i caeJap4.Scaffold18213 I 249 C 0

a score=-3781.000000
s ce10.chrX              5666229 22 + 17718866 CGATTCCACAAATATCACCATT
s caeRem4.Crem_Contig0   2378663 11 -  4500979 CATCTAAACA-----------T
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    218181 12 -  1189296 CAACTGAACA----------AT
i caeSp111.Scaffold626  I 7 C 0
s caePb3.Scfld02_0       3919693 20 +  4147112 CAATTGACCAGTGATTGT--GT
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213    31280 17 -   720316 -AAGTTAATA----TTACTGTT
i caeJap4.Scaffold18213 C 0 I 105
e cb4.chrX              10967150 25 + 21540570 I

a score=-2017.000000
s ce10.chrX              5666251 14 + 17718866 TTGAACGTG--TTGAA
s caeRem4.Crem_Contig0   2378674  5 -  4500979 GCGAG-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    218193 13 -  1189296 GCGAACGTGCTCT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3919713 11 +  4147112 GTGAACATG--CT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    31297 105 -   720316 I
e cb4.chrX              10967150 25 + 21540570 I

a score=8972.000000
s ce10.chrX              5666265 101 + 17718866 AATATCCGTCGAACTAACGTTTGTACTCGTA------GTATCACTTTTTCCTATCCGTTTT-------TCGTGTTTGAAA-----TCT--TTGATAGGAAGATAAGACACAGGGAACCCCG----------
s cb4.chrX              10967175 105 + 21540570 AACATCCATTGAACCCTGCTTTGTACTACTA------CTATCACTTTTTCCTATCcgtttt-------tcgt-tttgaaaacaatttt--cacaTCG----------CGAACAAAAACCCCACACCTCATG
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   2378679  87 -  4500979 CTCATCCGTTTAACCGAGAATTGTAGTACTA------CCATC-TTTTTTCCTATCCgtttt-------tcg---ttgaaa-----ttc--gTGATGG----------CGCAAGGAACCTCT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    218206  91 -  1189296 --CATCTCTTCAAAT-TGTACTTGTGtccta--tcttttttt-cttcttcctatccgtttt-------tct--tttgaat-----ttcgtgTGATAA----------GTCAGGGAACCCTT----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3919724 101 +  4147112 --TATCTTTATAACCATGGATTGGCGTActactttctctttc-tttttttctatccgttttgcttcaattt--tttgaat-----ttcgagagATAA----------GACAAGGAACCCTT----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    31297 105 -   720316 I

a score=78800.000000
s ce10.chrX              5666366 241 + 17718866 AGC-----TCTTGATGGAACAATG--CCTG-CCAAGATGTTTGTCAATTGTTGCATC---------TTCCTGGAAGACG--ACAAAAGTTCCCCCGTTTTTCATCTTT-TCGTCCCACTCTCATAC----------GAAT-CTTGAACAGAA----ATTGTTGCGAAAA---TTTTTTCTTTC-----AAAAACTGACCTCAAAT------CAGCGGAAGGAGTCACTTGTCA-CACTTGT--TCTTCTTTTA--TAT-ATCA----------CACTTAATAACACCT--ATCTTTTGTTGTCAAACC
s cb4.chrX              10967280 284 + 21540570 GGCTCGTGTC---TTGGAACAATGCACCAGAGCAATATGTTTGTCGATTGttgcatcttttt----ttcttggaagaaGACAAGGA---ACCTCTGATTTTCAATGTTA---CACCGCTCGCATCCCAACCCCATGGAAT-ATTGAACAGAAGAAGATTGTTGCGAGAA--AGAGAGtacctttgaaaaaaaactgacctCTTTGA-----GAGGGAGGGGAGCCACCTGCCATCACTTGT--TCATCGCACGATTAC-ACGATTTTTGTTCGCACTATCAAACATTTTACACCTTTGGAGGAGAGGC
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   2378766 254 -  4500979 GGCTCCTGTCCTGTCGGAACAATG--CCAG-TCAATATGTTTGTCAATTGTTGCATC---------TTCCTGGAAGACG--AAGAA---ACCTtcgtttttcatctttctctcAATGCTCTCATAC----------GAAT-CTCGAACAGAA------TgttgcgaaaatttttttttgctttctttcaaaaactgacctCAATGAATGAGAAGGGAGATGAGCCACTTGTCA-CACTTGT--TCTTCTCA----TAT-ACTA----------CACCTTATAACACCT--CGATTTTGTAATCAAGTC
i caeRem4.Crem_Contig0  C 0 I 117
s caeSp111.Scaffold626    218297 236 -  1189296 GGG----GTCGAGTCGGAACAATG--CCAG-TTGATATGTTTGTCAATTGTTGCTTC---------TTCTTGGAAGACG--AGG-----CCTtcggtttttcatttttctctcctcgCTTACATAC----------GAAT-CTCGAACGAGA----A-TGTTgcgaaaa--gttttttttt---------gaactgacCTCGAAG------TGAGAAAGAGAGCCACTTGTCA-CACTTGTTCTCATCTCATA--TAT-ACTA----------CACTTAATAACACCT--CTGTTTTGTTATATCACA
i caeSp111.Scaffold626  C 0 I 15
s caePb3.Scfld02_0       3919825 239 +  4147112 GGA------CCAGTTGGAACAATG--CCAG-TCAATATGTTTGTCAATTGTTGCGTT---------TTCCTGGAAGATG--ATG------CTACTTTTTTacatctttctctttctctcaggATAC----------GAATCCTCGAACGAAA----ATtgttgcgaaaa--attttttgtttt-----aaaaactgaCCTCAAAT------GAAAAAGCGGAGCCACTTGTCA-CACTTGCCGTCATCTCATA--TAT-ACTA----------CACCTGATAACACCT--TTGATTTGTTGTCAAACC
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold18213    31402 215 -   720316 AGC-----ACCGATTGAAACAATG--CCAG-TCAATATGTTTGTAGATTGCTGCATCTTCTTTTTGTTCTTCCAGGAAG--AAGGA---GCAGTTTCTTCTTATTTCTCTCGC--------------------------T-CTCGAACAAAG------tgttgcgaaaaaatttttttgcctc-----aaAAAGTGACCTCAAA-------GAGCGGAAGGAGCCACTTGTCA-CA-TCGTTCCCTTCTCATG--TATAACTA----------CACCT--------TT--CCGATTC-----------
i caeJap4.Scaffold18213 I 105 C 0

a score=-15363.000000
s ce10.chrX              5666607 34 + 17718866 AAAAC--------------------------------GGAGCTCTTGTAATATTCAAT-----ATTGAACG-----------------------
s cb4.chrX              10967585 29 + 21540570 GGAAC--------------------------------TAAGAAT-GGCATACTT---------ATTGCTTA-----------------------
i cb4.chrX              I 21 I 4
s caeSp111.Scaffold626    218548 31 -  1189296 CAAAT-----------------------------------GATTCCGCATTACTACAC-----ACGACGTA-----------------------
i caeSp111.Scaffold626  I 15 I 72
s caePb3.Scfld02_0       3920080 71 +  4147112 CAAAGGTGCCGGATGTTACAATGGATCTCGAACCAAACAAGATTCTTCATTCttagattttgaatttcata-----------------------
i caePb3.Scfld02_0      I 16 I 85
s caeJap4.Scaffold18213    31617 51 -   720316 --GAC--------------------------------ACATCTTTCACGTCATT---------ATTCTTTAtaatgataataataataatgaaa
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2379020 117 -  4500979 I

a score=8440.000000
s ce10.chrX              5666641 134 + 17718866 AACATTATGCCC---------TTTCCCATTTGA-CAAATAG---------GCCTTGATCCATCCTGCTCTAGACTATAATCGGCTTAA-CCAGGCCTTG--CTCATAGAT----TTCGATTCTTAGCCCC-TGTTTCCTC------------CATCCCC-----ACAACAACAAGTTA------------------
s cb4.chrX              10967618 118 + 21540570 AA----AAGAAC---------TTTCTGAGCTGG-TA-----------------------GAT----CTCAAGACTATAATCGGCTCTA--------GTG--TCCGACGTC----TTTTATTCTTAACCCCGTCTTTTCTCCTTTACTTCTTCCTCCCTC-----GATACGAAAGTTTA------------------
i cb4.chrX              I 4 I 6
s caeRem4.Crem_Contig0   2379137 115 -  4500979 AA----AAGACT---------CTGCTGAGCCGG-TA-----------------------GAT----CTCGAGACTATAATCGGCTCTATCCT---TGTC--CACAACGTC----TTTTATTCTTAACCTC-TCTTTGATC-----CTTCTTCCTCCCTC-----A--ACAACAGGCAA------------------
i caeRem4.Crem_Contig0  I 117 I 25
s caeSp111.Scaffold626    218651 125 -  1189296 AA----AAGACT---------TTTCTGAGCCGG-TA--------------GCTCTGGTAGAT----CCCGAGACTATAATCGGCTCAGTTCTATCCTT---------GTC----TTTTATTCTTAACCCT-TCTATTCTG-------TATTCCTCCCTCATCAGAATATAACAAGAGA------------------
i caeSp111.Scaffold626  I 72 I 9
s caePb3.Scfld02_0       3920236 126 +  4147112 -------AGACT---------CTCCTGATCCGG-TA--------------GCTCTTGTCGAG----CTACAGCCTATAAGCGGCTCAACCCCATCCTTG--TACACCGTC----TTTTATTCTTAACCCC-TCTTTTCCT-----GCTCTTCCTCCCCC-----CAAACAACAAGAGA------------------
i caePb3.Scfld02_0      I 85 I 9
s caeJap4.Scaffold18213    31668 172 -   720316 ------cACACCGTTTTCTTACTTCTGAGTTGGATAAATAAAATTGTTATCTTTTGGTAGAG---GCACGGGA--ATAATCGGCTCAATTTCATCCTCGGTGCCATCgtcgtttcttttttcttaaccCC-CTTCCTCCG------CTTTACCTGAATC-----TA-ACAACAGGCACATTCGTTGATATTCGGTA
i caeJap4.Scaffold18213 C 0 C 0

a score=-5148.000000
s ce10.chrX              5666775 18 + 17718866 -----TCCAAGGGCAACATCGAT
s cb4.chrX              10967742  6 + 21540570 -----TCAGAT------------
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold626    218785 18 -  1189296 -----TCAAATAGCAAAGTTCTA
i caeSp111.Scaffold626  I 9 I 3
s caePb3.Scfld02_0       3920371  5 +  4147112 -----TCAGA-------------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold18213    31840 20 -   720316 TCTATTAAGTTACCAATGAT---
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2379252 25 -  4500979 I

a score=81013.000000
s ce10.chrX              5666793 361 + 17718866 GAATTGT--GGAATTTGATACTAACGGTCC--CG--------------CGGGAA-----GGTGAAATTGAAG-TATTTG-----AATTA---TTGTT----------------TAATGCAAAAAGAT------CAAAGGTTCTA--ATGTTCTCGTAAGAAATGTTGTATCAAAAGAAACCCATCA-------CCATTGATGTATA-------CATCTTAACAAGGACCG-------AGTGCACATTTTCCCAC--AAAACCATTTTCTCAGC-TTTTCGAGAAGAAAAGA-GACAAATTAGGT-GTGTAGAGAATGGTATTGTTGTGAATCGATTAGTCATAGATTGCTTTTT---TT----GGTCGGCCGTTTCA--CCCTTT---CTTGGCCATTACTAATTGTAA--AAG-GGTC-------------TTTGACCATTATTAAAAC-TGGAAT-ACAACT-------AGAAAAGTT-----------
s cb4.chrX              10967748 369 + 21540570 ---TTGTTGGGAATTTGATACCATTATACCGACA--------------TCGTA------GGTGTAATTGAAGCTTTT-----------A---TTGTA---------------------GAGAGTCCT------CAAAAGTTGTA-AAAGTTCCCATGCTCCA---GGTATCAATAGCGAC-AATCATCCGTTTCCATTGAT---CAGCCGTCTCCTCCAAACAAGggcattttcccattttccaattttcccacaaaaaaccattttctcaGCTTTTTCGAGAAGAAAAGACGACAAATTAGGT-GCGTGGTAGAGGGCATTGTTGCAAATCGATTAGTCATAGATTGCTTTTT---TGTGCATGTCGGCTAGTTTT--CCCCGC-GTCTTGACCAGTAC-------AA--AGGAACTG-------------TATGACCATTCTGAGAAT-TGAATTGGAGAGG---------AAAAGTT-----------
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   2379277 362 -  4500979 GAATTGT--GGAATATGACACCGATATACCGACACTCGCGATAACATTTTGTA------GGTGTAATTGAAagtattca-----aatca---ttgtC-----------------AAATGAGAAATAT-------AAGAATTGTGTAGAGTTCCCATGCAAAG---AATATCAATGGAAAC-CATCA-----CTCCATTGAT---TA----------CCAAACCAGGAcact------ttttcccattttcccac--AAAAccattttctcagc-ttttcgaGAAGAAAGGGCGACAAATTAGGT-GCGTGGTTGAAGGTATTGTTGCGAATCGATTAGTCATAGATTGGTTTTT---TG----TGTCGGCTagtttc--tctttc---tctgacCAGTAC-------AA--AAG-ACTG-------------TATGGTCATagtaagaaa-gaaaat-aaaatt---------acaaGTT-----------
i caeRem4.Crem_Contig0  I 25 I 1
s caeSp111.Scaffold626    218806 353 -  1189296 GAATTGT--GGAATTTGATACTGATACCCCCTCT--------------CGGTAACCTGCAGTGTAATTGAAG-TATCCA-----AATTA---TTGTT-------TGAATATTGAATAGGAGAAAGAT----CACATCTGTTATG-----TTCCCATGCAAAA---CTTATCAATAGAAAACCATTA------TGCATTGAT---TG----------CCAGA---------------------CCATTTTCCcac--aaaactattttctcagc-ttttcgagaagaaaggGAGACCAATTAGGTGGTGTGAGGGAAGGTATTGTTGCAAATCGATTAGTCATAGATTGGTTTTTCCTTG----TGTCGGCTAGTTTTCCCCCTTT---CTTGACCATTAC-------AA--AAC-ACTG-------------TGTGATCATACCAAGAAAGGAAAAC-taaatt---------gaatgtt-----------
i caeSp111.Scaffold626  I 3 I 3
s caePb3.Scfld02_0       3920376 314 +  4147112 -----GT--GGAATTTGATACTGATAGCCC--CC--------------TGGTAACCTCTGGTT--AGTGTAA-TATTCA-----AATTA---TTGTT------------------------------------CATCAGTTGTG-----TTCCCATGGAACT---ATCTTCAATGGGAAG------------------------TG----------CCAAACAAGAACA--------TTTCCCCATTTTCCCAC--AAAACCATTTTCTCAGC-TTTTCGAGAAGAAAGGGAGACAAATTAGGT-GTGTGGTGAGAGGTATTGTTGCGAATCGATTAGTCAtagattggttttt-tttg----tgtcggctagtttt--cctttt---cttgaccattac-------aaagaaa-aata-------------gcTGACCATACTAGTaa--gaaaat-ggaatt--------ggaaagtt-----------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213    31860 388 -   720316 --ACTTT----CATCTGATACtttcgaaaa--ta--------------ttgaaa-----agtgTAACGAAAGTTCTTCCTTAGTAACTACCCTTGTTAGTTTTATGGTGCGTGtcacaaaaaaacgtttcccTTAAGAGTCCTG----GCATTCAAGCAAAT---CACA-------AAAG-CGTTA-------CCATTACTG--TA----------CATAACAGAG-----------------CATTTTCCCAC--AAAACCATTTTCCCAGCTTTTtggagaaaatagaaaaaaaaactaggt-tTTTGACCGTCTGTATTGTTGCTAATCGATTAGTCATaaattggttttt-cttt----ttt---cttttttt--tcttgtagaCACGTCCATTGT-------AA--AAA-AGCGGTCTTTCTTCGATTCTGACCACTATGGGGAC-GGCGTG-TGAATTGAGTGTAAGGAGAGTTGGCGCTTAGCA
i caeJap4.Scaffold18213 C 0 C 0

a score=-1267.000000
s ce10.chrX              5667154 8 + 17718866 --TAAAGCAC
s caeRem4.Crem_Contig0   2379640 6 -  4500979 --GGAAGc--
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    219162 6 -  1189296 --aagaac--
i caeSp111.Scaffold626  I 3 I 74
s caePb3.Scfld02_0       3920693 6 +  4147112 --gaagat--
i caePb3.Scfld02_0      I 3 I 1
s caeJap4.Scaffold18213    32248 8 -   720316 CGAAACAC--
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10968117 51 + 21540570 I

a score=-2088.000000
s ce10.chrX              5667162  7 + 17718866 TACTGAC-------
s caeRem4.Crem_Contig0   2379646  5 -  4500979 --tagaa-------
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       3920700  7 +  4147112 cCTTGAC-------
i caePb3.Scfld02_0      I 1 I 38
s caeJap4.Scaffold18213    32256 10 -   720316 ----GATAAgtcat
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10968117 51 + 21540570 I
e caeSp111.Scaffold626    219168 74 -  1189296 I

a score=-3102.000000
s ce10.chrX              5667169 50 + 17718866 CGAAAATAGT------TTTACCATCCATGCAAACTAGT--------ACTACAAAAT----------AGGCTCCC------
s caeRem4.Crem_Contig0   2379653 48 -  4500979 tgacaaaaat------ctgAACATCTGATACAACACAT--------AC-ATAAAAT-----------TGTTCCC------
i caeRem4.Crem_Contig0  I 2 C 0
s caeJap4.Scaffold18213    32266 79 -   720316 taaaaataataaatacctCCCCTTCAGACATGATTAGTTAGACTGAAC-AAGGAATTAAGAGGATAAAGTTTCTAACATC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3920707 38 +  4147112 I
e cb4.chrX              10968117 51 + 21540570 I
e caeSp111.Scaffold626    219168 74 -  1189296 I

a score=-601.000000
s ce10.chrX              5667219 15 + 17718866 TAAATATTAGAATAC
s caeRem4.Crem_Contig0   2379701 14 -  4500979 TGagt-tcaaattca
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3920745 15 +  4147112 TGAATATCATGAATA
i caePb3.Scfld02_0      I 38 I 11
s caeJap4.Scaffold18213    32345 15 -   720316 CAaacttttaaataa
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10968117 51 + 21540570 I
e caeSp111.Scaffold626    219168 74 -  1189296 I

a score=-2280.000000
s ce10.chrX              5667234  9 + 17718866 --TATATAAAT
s caeRem4.Crem_Contig0   2379715  9 -  4500979 --aaaataaac
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626    219242  9 -  1189296 --tttttccac
i caeSp111.Scaffold626  I 74 C 0
s caePb3.Scfld02_0       3920771  9 +  4147112 --GTTTTTGAC
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold18213    32360 10 -   720316 aataattaaa-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10968117 51 + 21540570 I

a score=111726.000000
s ce10.chrX              5667243 241 + 17718866 GTTTTGGTATTG-------------------------------AAAACCGCTTTCTG------------------------GAAACTTCAA---------------------------------------------------TGAGTAACTT---------AAAAGTAATCGTGATAACTA--ATTCATTATCACCTCTATCATTTCTATCTTTTCTTGAATCCACAAAACGCTATTCGACACC--------------------TGCTGTCCATTGCTTACTTACATTTCAAAG---CACTT------GTTTGCGTGTGCAAGCCTCATGAATAAAAGCATATTGAGACATCCGGTA----G--ACAGGTATACGGTAG--GCTGATGAATGCTC
s cb4.chrX              10968168 224 + 21540570 GGTCCGTTTTcg-------------------------------aaaac---------------------------------aatatttcaa---------------------------------------------------tGAGTAACTA---------GAAG----CGGTGGCATGTATTATTCATTATCACCTCTATCATATCGA---------GAATCCACAAAAC-----GCGATATTGTCAATTCTCTCT---------------------AACTTATATTCTAAAGACACATTCATGATGGTTCGCGTGTGTAGGCCTCATGAATAAACGCATATTGAGACATCCGGTG----GACACAGGTATACGGTAG----TGATGAATGTGA
i cb4.chrX              I 51 I 7
s caeRem4.Crem_Contig0   2379735 245 -  4500979 gttttgctaTTG-------------------------------ACAACGAGtctaca------------------------aaaatttcaa---------------------------------------------------tgagtATCTT---------GAAAGCATCATTGATAATTA--ATTCATTATCACTTCTATCATATCTA---------GAATCCACAAAAC-----GCAAtgtc----attctctcttttctccctCTGTCCATTTCCAACTTATATTTCAAAG---CATCC------GTTTGCGTGTGTAGACCTCATGAATAAAAGCATATTGAGACATCCGGTG----G--ACAGGTATACGGTAGTGTCTGATGAATGTTA
i caeRem4.Crem_Contig0  I 11 I 9
s caeSp111.Scaffold626    219251 241 -  1189296 attttgctattg-------------------------------aaaatgagacgagg------------------------aaaatttgaa---------------------------------------------------tgagtaaCTT---------GAAAGCAGCATTGATAATTA--ATTCATTATCGCCTCTATCATATCTT---------GAATCCACAAAACGCAATAGGATATC----ATTCTCTTC-------CTCTGACAATTTCTAACTTATATTTCATAG---CACTC------GATTGCGTGTTTGGACCTCATGAATAATAGCATATTGAGACATCCGGTC----G--ACAGGTATACGGTAG--GCTGATGAATGTTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3920780 228 +  4147112 A-CTTGCTATTG-------------------------------AAAACTTGtctgtg------------------------aaaatttgaa---------------------------------------------------tgagtaACTT---------GAGGAAAGA--TAATAATTA--ATTCATTATCACCACTATCATGACTA---------GAATCCACA---------AGAGTATC----ATTCTCTT--------CTCTGTCAATTCCAAACTTATATTTCAAAG---CACTC------AATTGCGTGTGTAGACCTCATGAATAAAAGCGTATTGAGACATCCGGTC----G--ACAGGTATACGGTAG--CCTGATGAATGTTT
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18213    32370 331 -   720316 aatttggtATGGACCATATTTTTCATCCATTTCCGGCAAATCAAAAACCGTTTGATACCCCGCCAAGGTTgtgttttctttccaatctcAAAACCAACCAGCTGTGCCGCCAGCATTGGCAATTCAcattttaccggaaaattgtGTGTCTTCAAAACGAAGAAAGTGGTTATGATAACTA--ATTCATTATCACTTCTA------------------GAATCCACCAAACGCAATAGAATAAC--------------------CCTGAGCCACCG-----TTATATTTTAGAA-----CTC------GTTTGCGTGTGCAAACCTCATGAATAAAAGCGTATTGAGACACCCGGTGTGTCG--ACGGTCATACGGTAG------ATGGATGTTT
i caeJap4.Scaffold18213 C 0 C 0

a score=-5920.000000
s ce10.chrX              5667484 24 + 17718866 AGGGGG-------AGTCCATCATAACCACCA-----
s cb4.chrX              10968399 23 + 21540570 -GGAGG-------AGGGCATCATTTCTTTTG-----
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2379989 31 -  4500979 TTGAGGGCCCACCATGGCAACATTATTCTCA-----
i caeRem4.Crem_Contig0  I 9 I 1
s caeSp111.Scaffold626    219492 19 -  1189296 TGGGGG---CAACAAGccatga--------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18213    32701 26 -   720316 ---AGG-------AAGACCTTTCGATTTCAACACCC
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3921008 20 +  4147112 I

a score=55657.000000
s ce10.chrX              5667508 224 + 17718866 GCAAAATTTCTT-----CTTGTCT--TGTGAAGCTCCTA----AATTGT----------GCCATCTTTCCTGGC------CCCGTATTTC--ATAATTGTTTGAATTTGTTATAGCAACATCTGTGTGA------------------AATGA--------ATCGCATGTTGACCTGCCTTAAGACTAATGACTCGTATC---GCGATGAGCT-------ACGAGAACGATTATGCGAATTTATAATCACAGGTG--GTCCCAGTCGAA------AAACTCT----CCCTCTCTTTAATAAA-----
s cb4.chrX              10968422 195 + 21540570 -----------------GTTATTC--TCGACACAGATCATCATAATTGTGCTTGTGCCAGCCTTCAACACCA------------ATTTTCATGcaattatttgaatttgtgATAGCAACATCTGTGTGAATTT--------------AGTAA-----------GAGGGTTCCTTCATTT-----CTAATGA--------------GAGAGTTAC-----ACGA-AACGATTATATGAATTTTGGATCACAGGTGGTGTCT-------------------------TCCCCTCTTTCCTAGA-----
i cb4.chrX              C 0 I 54
s caeRem4.Crem_Contig0   2380021 188 -  4500979 -----------------GTTATTC--TTGACGACTCCTCTCATAATTGT----------GCcatcattctca------------ttttcc--gtaattatttgaattcctGATAGCAACATCTGTGTGAA-TA--------------AGTGA--------ATCGCATGTTGACCCATCTAATGACTAATGACTCGTATT---GGGATGAGTT-------ACGA-AACGATTatatgaattttcaatcaCAGGTG--GTCC-------------------------TCCACTC--------------
i caeRem4.Crem_Contig0  I 1 I 68
s caeSp111.Scaffold626    219511 222 -  1189296 gcaacatttctTCCTATGTTATTC--TTGACGGTTTCACTCATAATTGT----------GCCATCTTTCTTA--------TTTATCTCTCCCgtaattatttgaatttgttaTAGCAACATCTGTGTGAA-TG--------------AGTAT--------ATTGCATGTTGACCCATCTTGTGACTAATGACTCGTACTGGGGGGATGAGTT-------GCGA-TACGATtatatgaattttcaatcacAGGTG--GTTC-------------------------CCTAT-TTTGCATTTT-----
i caeSp111.Scaffold626  C 0 I 53
s caePb3.Scfld02_0       3921028 218 +  4147112 gaaacatttattCTCACGTTATTC---------CTTCAATCATAATTGT----------GCTATCAT-----------------TTTCTCCcgtaattatttgaatttgttaTAGCAACATCTGTGTGAC-TTG-------GGAGGCAGTGT--------ATCGCATGTTGACCCATCTTGTGACTAATGACTCGTACT---GGGATGAGTTACTGCTAGTGA-AACGAttatatgaattttcaatcacAGGTG--GTCC-------------------------CCCCTCCTTGTATGTT-----
i caePb3.Scfld02_0      I 20 I 36
s caeJap4.Scaffold18213    32727 264 -   720316 ----------------TCTTGTTGAGATGAAGTCGTCTGTCATAATTGT----------GCCATCTTTCCACCTCTCCTACTGCTTCTTCCAATAATTATTTGAATTTGTGATAGCAACATCTGTGGGAA-TAGCATGACAACAAGCAATATCCACAGCAATCG-AGACTGAGATGACTTATTACTAATGACT-GTGAT---GGGTTAGGTT-------GGAA-AACGATTAGTTGCATACAAAATCACAGGTC--GCTTTATATAAATCTTCCAATCCCTTCACTCTTCCTCTTTATTTTCTTGC
i caeJap4.Scaffold18213 C 0 C 0

a score=-2945.000000
s ce10.chrX              5667732 12 + 17718866 -A-GTATAGAATTG
s cb4.chrX              10968671 10 + 21540570 ---TTTCGCTATT-
i cb4.chrX              I 54 C 0
s caeSp111.Scaffold626    219786 11 -  1189296 -A-TTTCGCTATT-
i caeSp111.Scaffold626  I 53 C 0
s caePb3.Scfld02_0       3921282 12 +  4147112 -ATTTTTGCTATT-
i caePb3.Scfld02_0      I 36 C 0
s caeJap4.Scaffold18213    32991 12 -   720316 CATTTTTGTCAG--
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2380209 68 -  4500979 I

a score=244372.000000
s ce10.chrX              5667744 468 + 17718866  
s cb4.chrX              10968681 489 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2380277 464 -  4500979  
i caeRem4.Crem_Contig0  I 68 I 2
s caeSp111.Scaffold626    219797 474 -  1189296  
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3921294 464 +  4147112  
i caePb3.Scfld02_0      C 0 I 45
s caeJap4.Scaffold18213    33003 413 -   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-5325.000000
s ce10.chrX              5668212 31 + 17718866 GGGCCAATCCAGCCTTGCTGCAAACGTTGCA
s cb4.chrX              10969173 29 + 21540570 ATGCCACGCC--ACCTCATTTACTCACTTTT
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2380743 18 -  4500979 -------------tttcttttttttatttct
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    220275 21 -  1189296 --------cc--ctccgatttatttttttct
i caeSp111.Scaffold626  I 4 C 0
s caeJap4.Scaffold18213    33416 24 -   720316 -----CTTCC--CATGTTTGCACacattgtt
i caeJap4.Scaffold18213 C 0 I 63
e caePb3.Scfld02_0       3921758 45 +  4147112 I

a score=-4403.000000
s ce10.chrX              5668243 22 + 17718866 ACAAAAAATCCAAATAATTTTA
s cb4.chrX              10969202 20 + 21540570 CCAAAAAG-CTAAATCCTAC-a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2380761 10 -  4500979 gcaaaa-----------cac-a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    220296 10 -  1189296 cacgat-----------tgc-a
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3921758 45 +  4147112 I
e caeJap4.Scaffold18213    33440 63 -   720316 I

a score=132848.000000
s ce10.chrX              5668265 169 + 17718866 AAATAT-TGTATTTTTC------------------CAGCATGAGCCGTAGACGAAAAGCGAATCCGACAAAACTGAGTGAAAACGCGAAGAAGCTTGCCA---------AGGAAGTTG------AAAATAGTCAAGAAGAAAAC---GACTGCGACATGCTGGCCAAACCGCAAACCCCCACGATTATCATACCTGGTCATGTGAG
s cb4.chrX              10969222 196 + 21540570 aaacaa-tttcttttttatatctcttttgtttttGCAGCATGAGCCGTAGAAGAAAAGCGAATCCAAcgaaattaactgaaaacgcaaaaaagtTGGCAA---------AAGAAGTGGCCGAGAATAACAGTCAGGAAGAAAACGAGGAGGACACAATGCTGGCTCAATCACTCACCCCAACTATTATCATTCCGGATCATGTgag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2380771 169 -  4500979 acactg-tttttgtttc------------------cagCATGAGCCGTAGAAGAAAAGCAAATCCGACAAAGCTTACTGAAAACgccaaaaaattatcaa---------aagaaattg------agaacagTCAAGAAGAGAAC---GACGACAAAATGTTGACCCAATCGCACACCCCGACTATTATAATCCCAGATCACGTAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    220306 170 -  1189296 caacacttttttgtttc------------------cagcATGAGCCGTAGAAGAAAAGCGAATCCGACTAAATTACCTGAAAACGCGAAAAAATTGGCGA---------AGGAGGTGG------AGAACAGTCAAGAAGAGAAC---GAGGACAAGATGTTGCTTCAACCACAAACTCCTTCTATTATTATCCCGGATCATGTGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3921803 177 +  4147112 --ACAACCTTTTGTTTC------------------CAGCATGAGCCGTAGAAGAAAAGCGAATCCGACtaaattatctgaaaacgCGAAAAAAGTGGTGACTACAAAAGAAGTGGTGG------AGAACAGTCAAGACGAGAAC---GAGGACAAAATGCTTGTGCAACCAATGACTCAAACTCTTCTCATTCCGGATCATGTGAG
i caePb3.Scfld02_0      I 45 C 0
s caeJap4.Scaffold18213    33503 169 -   720316 acacat-tttttgtttc------------------cagcATGAGCCGTAGAAGAAAAGCGAATCCGACAAAGTTAActgaaaacgcaaaaaaattggcCA---------AGGAGGTGG------AGAAGAGTCAAGAAGAGAAC---GAGGGCAAAATGATGATCCAAACTCAAACTCCAAACATCTTGATTCCGGACCATGTAAG
i caeJap4.Scaffold18213 I 63 I 82

a score=-2944.000000
s ce10.chrX              5668434  2 + 17718866 TT--------
s cb4.chrX              10969418  2 + 21540570 tt--------
i cb4.chrX              C 0 I 57
s caeRem4.Crem_Contig0   2380940  2 -  4500979 TT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    220476 10 -  1189296 TTCACCTTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3921980 10 +  4147112 TATATGCATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    33672 82 -   720316 I

a score=-7763.000000
s ce10.chrX              5668436 34 + 17718866 -----------GTCCATTCTTGGTCCTGAAAACATCCTCAGCTTT
s caeRem4.Crem_Contig0   2380942 35 -  4500979 ACCAGTTCAGTTcctatatt-atttttttcagttcc---------
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold626    220486 36 -  1189296 ----Ggcc---tcccttttt--ctcttggcGGCGGGCAGGGTAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3921990 38 +  4147112 ----GTTC---TGTTATATGGATTCAAGGGAGTGCCCTGAGAGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    33672 82 -   720316 I
e cb4.chrX              10969420 57 + 21540570 I

a score=1768.000000
s ce10.chrX              5668470 15 + 17718866 --TACAA--TGAACGCGTT
s cb4.chrX              10969477 13 + 21540570 --TGCAA----AATGCGGT
i cb4.chrX              I 57 C 0
s caeRem4.Crem_Contig0   2381008 17 -  4500979 --AACAAGAAGAATGGGGT
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold626    220522 15 -  1189296 ACAGCAG----AATGCGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3922028 15 +  4147112 AGAGTAT----AAAGCGGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    33672 82 -   720316 I

a score=32798.000000
s ce10.chrX              5668485 130 + 17718866 AAC---CTTCTAATTAGGATGTGATATTTATCCGCTTAGAT----------CCCCTGCTCTCAAGAA--AGCGGAG-CAGAGATGCAAGAACAAATTAGGTAGAA--------CACTATAATTATGATTC-CTTT--TACCGCACGTTGCGTAATAA
s cb4.chrX              10969490 137 + 21540570 AACCATCTGCTAATTAGGACTGA-CAGATATCCTTTTA-------------GAGCAACCTACCGGAA--AGCAAAACCAAAG----AAGCGCGAATTAGCGGGAGAGGGGGTACATTATAATTAGGGAACGCGTTTCTCCCGCACATTATGTAATAC
i cb4.chrX              C 0 I 81
s caeRem4.Crem_Contig0   2381025 129 -  4500979 AAC---CTTCCAATTAGAATAGA--AGATATTCTCTTAAGA--AGAGC---GTGCATTGCACCGGAA--AGCGGAG-CACAG----AAGCGCAAATTAGGAACAG--------CACTATAATTATGAATC-CGTT--TACCGCACATTACGTAATCT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    220537 130 -  1189296 AAC---CGTCTAATTAGGATAGGAAACACATCTTcatgagaagagagaaaagagcaagCCACCGGAA--AGCAGGC-CGA-----------CGAATTAGAGGGAA--------CACTATAATTAACACTCCCGTT--TACCGCACATTACGTAATCA
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3922043 130 +  4147112 AAC---CTTCTAATTAGGATAGAAAAGCCATCCCCTTTGCA--AGAGAACGGAGCAAGCTACCGGAAAGAGCAGCA-CAC-----------CGAATTAGAAGGGA--------CACTATAATTAGGGGCCTCGTT--TACCGCACATTACATAATCG
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213    33754 108 -   720316 ACC---CTTCTAATTAGG-CAGA--GGTTATGCAGATAGCA------------CCCACACTCGAAAA--AACGGGA------------------ATTAACGCAAA--------CACTATAATTAGGATGT-CGTT--TACCGCACGTTGCGTAATTA
i caeJap4.Scaffold18213 I 82 C 0

a score=-9632.000000
s ce10.chrX              5668615 33 + 17718866 TAAGCGAGGAT--GCTAGAAAGAAAGGTGACAGTC------------------
s caeRem4.Crem_Contig0   2381155 32 -  4500979 TTTGCGAGAA---GCTGGGTGGAACGGTGAACACC------------------
i caeRem4.Crem_Contig0  I 1 I 49
s caeSp111.Scaffold626    220668 31 -  1189296 TTTACGGGGA----TTGCTCAGGAAGATGTGCGAG------------------
i caeSp111.Scaffold626  I 1 I 14
s caePb3.Scfld02_0       3922174 19 +  4147112 TTTTCTTGA----------CAGGAAGGTG------------------------
i caePb3.Scfld02_0      I 1 I 6
s caeJap4.Scaffold18213    33862 53 -   720316 TCATTCAGAGCCATTTGGAAAGCGCGGCGAGGACAAGACAAAGAGCTTAAGTA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10969627 81 + 21540570 I

a score=-6594.000000
s ce10.chrX              5668648 23 + 17718866 AAAGAACGATT-------CAGTAAGATATG-----------------------------
s caeSp111.Scaffold626    220713 22 -  1189296 AAAGCGTTTTTGT-----TACTTGAAC--------------------------------
i caeSp111.Scaffold626  I 14 C 0
s caePb3.Scfld02_0       3922199 22 +  4147112 AAGGAATCTTTTG-----TTCTTAGAT--------------------------------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18213    33915 56 -   720316 TGGGGGCGATTGATCAGCTTCTAGAAC---AGAAGCACATACATTAGCTGGCGTTTTAG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10969627 81 + 21540570 I
e caeRem4.Crem_Contig0   2381187 49 -  4500979 I

a score=-5659.000000
s ce10.chrX              5668671 25 + 17718866 ATTTGCATTGTTATCCATACAATTT-----------
s caeRem4.Crem_Contig0   2381236 11 -  4500979 --------------ATCTTTATTTT-----------
i caeRem4.Crem_Contig0  I 49 I 13
s caeSp111.Scaffold626    220735 23 -  1189296 -TTTGCA-TGGCACACAtttatttc-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3922221 14 +  4147112 -----------CATGCTTTTAGTTC-----------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    33971 30 -   720316 ------ATTGGCATTTATTGATTGTTATCATGAATT
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10969627 81 + 21540570 I

a score=142762.000000
s ce10.chrX              5668696 600 + 17718866  
s cb4.chrX              10969708 585 + 21540570  
i cb4.chrX              I 81 C 0
s caeRem4.Crem_Contig0   2381260 592 -  4500979  
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold626    220758 604 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3922235 596 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    34001 617 -   720316  
i caeJap4.Scaffold18213 C 0 I 79

a score=-12776.000000
s ce10.chrX              5669296 58 + 17718866 CATGGCACACTCAATAAAC---------------TGCCCCCATGCC--ACTCCTTGTTTCTTT-----AGCAGGGGGAAG
s cb4.chrX              10970293 45 + 21540570 TACG------------AGCA--------------AGCTCGCTCCCCGGATCCAAGGAA-------AGAAG--AGTTGGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2381852 75 -  4500979 CATGTCTCAaaa--gaaacattatttttgttttgaaccCTCTTCTC-TATCCCTTGAATCTTTTTGGGGG--Gattgaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    221362 66 -  1189296 CACATCTTAATTCAGAGACACTGCT--------------TCTTTCCTTCCGTGCTGCTCTTTTTAAGGAGAAAGACGGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3922831 68 +  4147112 CACGTCT-------GAGACATTGCTCCGC-----AGCTCCCTTTCCACACATCCTGCCTCTTTTGAGGActaggaagaag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    34618 79 -   720316 I

a score=278418.000000
s ce10.chrX              5669354 387 + 17718866 CAA-----AGGAAGAGTTGT-----GAGGAGTA-------CTGAATTTGATTGTCACAATA---AATACTAATAATAATAACAAGAACTGAA-AGAATAGAATAAAAGAAACCTCCCTTTCTTGC-GTC-TCGCGCATTCTTCTACACATATCCGTCGCACAATTAG-CAAGGCTCAGAAGACTGAGAAGAAGATACAGCTCCTT---GTCGCCCGCCCCG----AAGATC-----------------------------------------CTTCTTCCT-CTC-----AAATAAGCTCTTTTTTCTTCTCCTCA--CCCTTTTGTCTCAAATTCCAGTTA---TTATTATTATTATTTTTCAACGC-----GCCTCCTTACAGATGGACGACACGCCGAATCCAGCCGGGTCACCTCACGACGCCTCAATCAAATCGAGCTCGAGCACCATCTCCGATCATACGAGGTGGGTG
s cb4.chrX              10970338 428 + 21540570 CAA-----AGGAAGGg-tga---aagaaaaatatgagCCCCTGAATTTGATTGTCATA--AAAgaagaataataataataacaaGAACTGAGTagaaaagaataaaagaaaCCTCGTCTTCCCGA-GTC-T--AGCATTCTTCT--ACATATCCGTCTCACAATTAG-CACGAC------------GAAGAAGACACGGCTTCTTATGGTCGCCCGCCCCGTCGAAGGAGCTGTATCCAATTCTTT------GAGAGTCCTGTTGTGCccgccttcttcttcctt-----aaacaggctcttttttctttctctccaaTCCTTTTGTCTCAAATTCCAC-CA----TATTCACAC-ATTCGCCATTATTcccattttgttttcagatggaCGACACCCCGAACCCAGCTGTTTCACCCCATGACGACTCGATCAAGTCTAGCTCCAGTACCATATCCGACCATACAAGGTGAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2381927 385 -  4500979 aga-----aggacgagTTGT---AAAATGAGTA-------CTGAATCTGATTGTCacaataaataataataataagaataacaagaactgag-agaatagaataaaagaaaCCTCCTCTTCCCGA-GTC-T--AGCATTCTTCT--ACATATCCGTCTCACAATTAG-CAAGAC------------GAAGAAGACACAGCTCCTTGTGGTCGCCCGCCCCG----AAGAGCTGTATCCAATTCTTCGGAGGAGAaaggctt-----------cttcttcttcctt-----aaacaagctcttttttct------------cttttgtctCAAATTCCAG-CA----TATGCATAT------------------CCTTCCTTTCAGATGGACGACACTCCGAATCCTGCTGTATCCCCACACGACGATTCGATCAAATCGAGTTCCAGCACCATATCTGATCATACAAGGTGAGTT
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626    221428 396 -  1189296 AAAGAAGTGGGAAGAGTTGT---ATGAGGAGTA-------CTGAATTTGATTGTCacaata---aataataataataataacaagaaatgag-agaatagaataaaagaaaccTCGTCTTGCCGC-GAC-T--AGCATTCTTCTACACATATCCGTCGCACAATTAGtcaagat------------gaagaagatacAGCTCGTTGTGGTCGCCCGCCCCG----AAGAGCTGTATCCAATTCTTCAGAGA-ATGAGtcc------------ttccttctttctttacTCAAAcaagctcttttttc-----------ttcttttgtctcAAATTCCAGACA----CATTCATAT--T---------------CCTTGTTTTTAGATGGACGACACTCCGAATCCAGCTGTTTCACCACACGACGCATCTATCAAATCAAGTTCGAGCACTATATCTGACCATACAAGGTGAGTT
i caeSp111.Scaffold626  C 0 I 13
s caePb3.Scfld02_0       3922899 394 +  4147112 aaa-----aggaagagttGT---AAGAGGAGTA-------CTGAATTTGATTGTCAcaata---aataataataataataacaagAACTGAG-AGAATAGAATAAAAGAAACCTCCCCTTCCCGCAGTC-T--AGCATTCTTCTACACATATCCGTCGCACAATTAGCCAAGAC------------GAAGAAGATACAGCTCCTTGTGGTCGCCCGCCCCG----AAGAGCTGTATCCAATTCTTCAGAGA-ATGagtcc------------cttcttcttcctt-----aaacaagctcttttttcattcttct---tccttttgtcTCAAATTCCAGACA---TCATTCACGC-AT---------------CCTTGTTTTCAGATGGACGACACTCCAAATCCAGCTGTTTCACCTCACGACG---ACATCAAATCAAGTTCCAGTACCATCTCCGATCATACGAGGTTAGTT
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold18213    34697 385 -   720316 caa-----agaaagaGTTGTGTCATGATGAGTA-------TTGAATTTGATTGTCacaata---------aataataataacaagAATTGAG-AGAATAGAATAAAAGAAAAC---------CGA-GCCAT--CGCATTCTTCTACACATATCCGTCGCACAATTAgcgaagaagatgaagaagaagaagaagatacAGCTCCTTGTGGTTGCCCGCCCCG----AGAAGCTGTATCCAATGCTTCATCTG-AAGGGACCC-----------CTTCTCCATTTCT----------Agcttcgttttc---------------tttgtcTCTAATTCCAGTCGGTATTATGCATAC-GTT--------------GCTCATTTTCAGATGGACGATACCCCAAATCCTGCGTTATCCCCTCACGACGCTTCAATCAAGTCCAGCTCAAGCACAATCTCTGATCATACAAGGTGAGTG
i caeJap4.Scaffold18213 I 79 I 5

a score=-6503.000000
s ce10.chrX              5669741 28 + 17718866 AAATTGGCCGAATGAC--------CGGTTTATTA--GA
s cb4.chrX              10970766 13 + 21540570 -------------GGT--------CATGTTATCA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2382315 33 -  4500979 AAAATGACCAACGGGTGAATCAG-CACGTTATCA----
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    221837 36 -  1189296 ATGTTGACCGATGGGAATAGTGGCCACGTTATCAAA--
i caeSp111.Scaffold626  I 13 C 0
s caeJap4.Scaffold18213    35087 22 -   720316 AAAAGAGCCTAAAGAA-----------ATTATG-----
i caeJap4.Scaffold18213 I 5 C 0
e caePb3.Scfld02_0       3923293 30 +  4147112 I

a score=43944.000000
s ce10.chrX              5669769 330 + 17718866 GTTGGGAGGGCGAACGATAATGTGTTAACATGACA----GTTTACGT----GTGTGTTGC-----AAGTAAGAAAATACTGAAAGAGACAGGAAAACGACATA--------TTGTTCCCCCG----ATTAGAGACGT---------TTGGAAATCGAGGTCATGATGATAAC-----------------GGGCGAATTGCCGAGTTTTGAATTTTTACCGCTC-CCCCCTCA-------------GTTACTATTTTT--TCATCC---------------ATTCCTTTCGCAAAC-AATGAGTGTG--CTCACATATACCC-ATCCCGTGATCTACAATTTCGGGTGAGTT------TCGATAATATTATCAAAAACCTTTAAACAAACCT--------------------GAACTT----TTTAACT--TGCCTGCCAAAACGCAAA
s cb4.chrX              10970779 288 + 21540570 -----------------------CCAAATACGACA----GTTGACAA------GTGTTGC-----AAAAACGGGAATGC-----------------------A--------TTGTtccgat------ttgaaattttttgagagtatGGAAAATTGAGGTCAAGATGATAAC-----------------ATTACC-CCgtggagttttgaa-ttttaccgCTC-CTCCCT------------------------ATC--ACTATCATCACTTCCCACACTA-----TTCGCAAACAAATGAGTGTG--CTCGCTTATTCCC-ATCTCGCGATCTACAGTTTCGGGTTAGTT------GCAAAAGTaac--caaaaagttttaaacaaACCT--------------------CGGCATTCGCTATCATT--AGCCTGCAAACGTTCCA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2382348 288 -  4500979 -----------------------CCTCAC-CGGCAGTGTGTTAACAAGACAGTGTGTTgcaatagaaaaagagagaggc-------------------aCA-A--------TTGTTCCCCTCG---ATTAAAATTTC-----------GAGAACCGAGGTCAAGATGATAAC-----------------AATGAA-TTGCCGGGTTTTGAA-TTTTACCGCTCACTCTCT------------------------TTC--ACCCTC---------------A-----TTCGCAAAC-AATGAGTGTG--CTCGCTTATTCCC-ATCCCGTGATCTACAGTTTCGGGTTAGTT------TCAAAAGTAAC----AAAACCTTTAAGCAAACCTACC----------AAAAACCTAGCCT----TATCATCAAAACCTGCAAAATATCAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    221873 305 -  1189296 -TTATCA--CCGAACGATAATGTTTCAAAACGACG----GTTAACGA--------GTTGC-----AAAGAAGACAAGGG-----------------------AAAACCATGTTCCTCCCTCCC--gattagaatttt---------tggaaaa-cgagGTCATAGTGATAAC-----------------AATGAATTTGCcgagttttgaatttttaccgCTCACTCCCT-------------------CAAAATTT--GTGCCC---------------A-----ATCGCAAAC-AATGAATGTGCTCTCGCCTTCTCCCTATCCCGTGATCTACAGTTTTGGGTTAGGTTTCAACTCAATTGCAAC----AAACCCTTTAAACAAACTTAAC-----------------AGTCAT----TATCACT--AACTTGCAAGa-tgtta-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3923323 283 +  4147112 ------------------AATG-----AGATGACC----GTTATCAA--------ATTAT-----CAATATGATGCGTA-----------------------A--------TTGctgc--------aaaaaaacttt---------tggaaaagtgGGGTCAAGGTGATAAC-----------------AATGAATTTGCCGAGTTTTGAA-TTCTACCGCTCCCTCCCTC----------------CCCCAATTTT--TCACCC---------------A-----TTCGCAAAC-AATGAGTGTG--CTCGTCTATTCCC-ATCCCGTGATCTACAGTTTCGGGTTAGTT------TCAATAGTAAC----AAACCCTTTAAACAAACCTGGCTCAAAAATATAGAACTTACTTCC----TATCAGT--GACttgcaaaattgaaa-
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold18213    35109 301 -   720316 -----------------------GCTTGCAAAACG----GGTGGGGA--------GACGC-----ACAATCACAATCAC-----------------------A--------ATGTTCGCCCGATTAGTTAacaattc---gacaaaaaaagaatCGAGGTCACACTGATAAAGAAAGCGAACCGAGTCGAATtaaatttccgagttttgaaGTTTCACCGCTCGCTCGCTCATTTTCTGTTTCTCATTGCCATTCTCCATTCTCC---------------A-----TTCGCAAAC-AATGAGTGTG--CTCGGTTATACTC-AACCCGTGATATACAGTTTTGGCTGAGGT------TTAA-ACCAACTTTCAAATCTTAGGAACA-------------------------GTTCGC----TATC-----AAATTGCAAA--------
i caeJap4.Scaffold18213 C 0 I 60

a score=-4870.000000
s ce10.chrX              5670099 27 + 17718866 AACTTTGCTCTCATCTGCAATCGGTCT
s cb4.chrX              10971067  9 + 21540570 ------------ACTTGATA------C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2382636  9 -  4500979 ------------TTCCgtta------t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    222178  9 -  1189296 ------------tttcaaaa------a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3923606 15 +  4147112 ------------tttcgaaaatattga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    35410 60 -   720316 I

a score=25407.000000
s ce10.chrX              5670126 419 + 17718866  
s cb4.chrX              10971076 540 + 21540570  
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   2382645 491 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold626    222187 486 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3923621 484 +  4147112  
i caePb3.Scfld02_0      C 0 I 59
s caeJap4.Scaffold18213    35470 413 -   720316  
i caeJap4.Scaffold18213 I 60 C 0

a score=-15431.000000
s ce10.chrX              5670545 56 + 17718866 --------------------------------GACGCTTGATCTTGAAATACTTGTCTGAGGAAAGCCTTGTTGTGTCAAAAAAGATC
s cb4.chrX              10971625 27 + 21540570 ---------------------------------TTCTTTTGGATT--------------------GCTCTTCTCGTTCA-------T-
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2383168 54 -  4500979 ---------------------------------tacttttgtttttgagtagACACCGTAGGCAGGACCTTTTTATCCAattcaact-
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold626    222673 44 -  1189296 --------------------------------aaATTTCCATCTT----------CCGGAAATa-gtccttttttctcaactcgata-
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18213    35883 75 -   720316 GATGGTAATGgtgacatcggaaaaaaaaaagaatttcttcttctt----tttttgcct-------gccTGtttttttCAGCTCGTC--
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3924105 59 +  4147112 I

a score=131069.000000
s ce10.chrX              5670601 320 + 17718866 ACATCCGTAAC------------AAAAAATAGAA-CAACATCGTC------CTTCTGTTTT--------ACTAATTTTTTCAATTCGGTTTGGCAGCTTGACATTGCCCGTT--------------------------------------TTCACTGTCAA-------AGTAGAATAGGATGATTTGGTGACAGCTGAAATTGCAATAACAGAAAACGGAGAGCAGCGAGTGGGCA---GTAGCCAGCCAATAAAGGATAAAAGAAA--GGCCACGCTGAGTGACGAGTGAAAGAAGATGACTGATGAG---CAA---AAGGATCCCCCTTTATTTTCC--------ATTC--------------------------TCGTCCGGG-----AGGGGGGCTCACTGT-AGAAAAA----CTCGGAACTTAGGCTTCCTTTTCATGT---TC
s cb4.chrX              10971652 331 + 21540570 ------ATTCTTT----------AGACAGAACAA-AAATACCTTG------CTTCTTGTATCCCGac---cgaa-ttttttaattcggtTTGGCAGCTTGACATTAGActac----------ttttctt-------------cttctt--ttcactgTCAAACT----AGTAGAATAGAATGATTCGGTGACAGCTGAAATTGCAataacagaagaagaagagaag-gagtGGGCA---GTAG-TAGCCAATAAAGTATAAAAGAAA--GGCCACAGTGAGTGACGAGTGAAAGAAGATGACTGATGAGAGAAAA---GGGgat---attttattttccaaaaacggaAGC--------------------------GAATTTGGAAATTAGGGGTGTCGAACTGTAAGAATC------------------CTTGCA---CTTGT---CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2383222 336 -  4500979 ------gtttttttttccga---aaaaagaagaagagacatcGTT------CTTCCTATCTTacattttactaa-tttttcaattcggtttGGCAGCTTGACATTgcctttctccttttccttcttctt-------------cttcttcattcactGTCAA-------AGTAGAATAGGATGATTCGGTGACAGCTGAAATTGCAataacagaagaagaagagaagcgAGTGGGCA---GCAG-CAGCCAATAAAGGATAAAAGAAA--GGCCACACTGAGTGACGAGTGAAAGAAGATGACTGATGAG---CAA---AGGGat---cttttattttccaaaaaagaaag-----------------------------------------ggaGGGGCACACTGT-AGAATG------------------CTTCCGTTTCTTGT---TC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    222717 327 -  1189296 -tctttgttttta----------aaaaatgaaaa-cagccatgtt------tctctttttgtgcATCCgactaa-tttttcaattcggtTTGTCAGCTTGACGTTGTCTTTC----------CTTATTT-----------TACTCCTTC-TTCACTGTCAA-------AGTAGAATAGGATGATTTGGTGACAGCTGAAATTGCAataac---agaagaagagaag-gagtgGGCA----CAG-CAGCCAATAAAGGATAAAAGAAAGGGGCCACAGTGAGTGACGAGTGAAAGAAGATGACTGATGAG---TAA---AAGGat---cttttatttt---gagaCGGAAGC--------------------------TCGGGGAGA-----GGGAGAGCACACTGt-agaat----------------------tcaattctttcttgCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3924164 313 +  4147112 -ACTTCCTAtttt----------aaaaaaggaaa-caac-------------ATCTTTTCA-ACATCCGACTAA--------------TTTGTCAGCTTGACATTGaccctt----------ctctcttcttccccAAAACCCTTCTTT-TCTACTGTCAG-------AGTAGAATGGGATGATTTGATGACAGCTGAAATTGCAAtaac---agaagaagagaag-gagtgGGAAGGAGTAG-CAGCCAATAAAGGATAAAAGAAA--GGCCACAGTGAGTGACGAGTGAAAGAAGATGACTGATGAG---CAA---AGGGAT---CTTTTATTTC----AAACGGAAGT--------------------------------AGA-----AGAGGGGTTCACTGT-AAATTA------------------CTGCCACCCCTTTC---CG
i caePb3.Scfld02_0      I 59 C 0
s caeJap4.Scaffold18213    35958 350 -   720316 ACGCTTGTTTCGGAATTTAGAATAGAAAGAGAGA-AAACACTTTTAAGTGCTCGCTTTTCA--------AATAA---CTTCAATTCTATTTGGCAGTTTGACATGGCT------------------------------------------TTCACTGTCAAGTTACAAAGCAGAATAGGATGATTCGGTGACAGCTGAAATTGCAAtaacagaagaagaagaga---aagcAGGGC---GTAG-T-GCTAATAAAGAATAAAAGAGA--G---CCAGTGAGTGACGAGTGAAAGACGATGACTGATAGG---CAGCCCGGGGAT---CCTTTTATTC---------GAAGCTGCACGGACCACTGTAGGTTTTGTAATAGGGTAGG-----AGAGGGGAGAGTTTC-TGAATCATCAGCtta---------gtttcttttctttt---tt
i caeJap4.Scaffold18213 C 0 I 167

a score=27026.000000
s ce10.chrX              5670921 140 + 17718866 AACTC-TTGCGAAATCATCAT-AGACCAATCGGTGAAACGCCGTGCCAGTTCAGC-ACTTTTCGCGCTTTGATAA-TGTTTAT-TTCGAGAGTTGCTGATA------AAAAATTATGGCTACAATT-CATGA-----GATGTTCT-----------------GTTT--------CTTGAGTT
s cb4.chrX              10971983 138 + 21540570 GATTC-CTCCTAG------AC-ACACTGGCCGGTGAAGCTCCGTACCAGGTCAGC-GT--------CACTGATAACGAGAAGT-TCCA----TTAGTAATGCCTATAAAGAATCTCAGTTTCATTT-TATTATGCTACATGTTTT-----------------TTGTGATA----GCCAAATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2383558 145 -  4500979 AGCTC-TTGCGAAATTGACAC-AGACTGGTCGGTGAAACTCCGTGCCAGTTCATC-TTCTTTGGCgcactgataa-gaaaaat-ttgatggGTTAGTAATA---ATGAAGAATCATAGTTTCATTC-TTCAAGG---GATGTTCA-----------------TTTTCGT--------AAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    223044 171 -  1189296 TGTTCATTGCGAAATGGGAGGCAGACTGATCGGTGAAACTCTGTGCCAGTTCAGC-ACATTTAGCGCACTGATAA-CCGTTTTCTTGATGTGTCACTGATA---ATAAAGAATCATAGTTTCATTT-TGTAA-----GATGTTCAGCTtctcgtcttttttttctggatatAGCTCTGAGCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3924477 149 +  4147112 TGTTC-TTGCGAAATTATCAG-AGACTGATCGGTGAGACCCTGTGCCAGTTCAGCTCCTTTTAGCGCATtgataa-gaatttt-ttgatgtgtCAGAGATA---GCAAAGAATCATTGTTTCATTTCCTTAA-----GATGTTCA-----------------TTTAGATG----TTTGAGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    36308 167 -   720316 I

a score=-23988.000000
s ce10.chrX              5671061 33 + 17718866 CTAA------------------AGAGCGGTTTTTAAT------------------TCTTCACCACTTCC
s cb4.chrX              10972121 40 + 21540570 CTTAAA-----------------------TACTTCCTGCAACTAGAGAA------TTTGTGTCAACTTC
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2383703 42 -  4500979 CTGATATA--GTGG--------GAGACGCTACTTCCT-----------A------GGTGTGTCTCCCGC
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold626    223215 48 -  1189296 CATAAATAAGATGGGTTT----AGAATGATCTTTATA-----------G------ATTAAGCCACTTCA
i caeSp111.Scaffold626  C 0 I 72
s caePb3.Scfld02_0       3924626 52 +  4147112 ACAAAAGATTGTAGACTTTGTAAGTATGGGATTTCGG-----------A------ATTAAAATGCTCTA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold18213    36475 37 -   720316 --------------------CTGAGACGtagttttaa-----------aataatttttgaagtATTTC-
i caeJap4.Scaffold18213 I 167 C 0

a score=-17743.000000
s ce10.chrX              5671094 49 + 17718866 ATTTTCAA------TTTCAGTT-----------------------------------TACAAAATTGAGCATACATCCC--------ATTTATTGAGA
s cb4.chrX              10972165 66 + 21540570 aatttcaaagtgtcacTTA-TTATTTTCTCA--------------------------TGACAAACAGAGCA-AAATACA----AAGAAATCGTTTGTG
i cb4.chrX              I 4 I 2
s caeRem4.Crem_Contig0   2383754 92 -  4500979 AATTTCAATGCATTCCTCAGTTGTTCTATAAATGAATGCAAATAGTCTTCTACACTTTaacaaaaagtgca-aaatacA----AAG-AGTTGTCAGTA
i caeRem4.Crem_Contig0  I 9 I 3
s caePb3.Scfld02_0       3924687 67 +  4147112 GTTTTACAAGCAT-AGTCA-TTAAAACCGAA--------------------------TAA-AAATAAGACA-ACAGACACCGGAAA-CGTTATTATTA
i caePb3.Scfld02_0      I 9 I 3
s caeJap4.Scaffold18213    36512 53 -   720316 GCTCGCAA------GAACA-TTGCGTTTTAG--------------------------TAC--AAGAGTGTC-ACTCTCA----CTC-ACCTATG----
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    223263 72 -  1189296 I

a score=-13305.000000
s ce10.chrX              5671143 37 + 17718866 ---------GCTCTGCACACCCCTAAATTATTTTTGTTGTTCTA---TT
s cb4.chrX              10972233 28 + 21540570 -------------------ACCTGGAATTAGCATTGTTGTGCTC--ATT
i cb4.chrX              I 2 I 6
s caeRem4.Crem_Contig0   2383849 40 -  4500979 ---------GCACAGCAAGCCTTATAATTATGACTCCgatgttcaaatt
i caeRem4.Crem_Contig0  I 3 I 6
s caeSp111.Scaffold626    223335 38 -  1189296 ---------GCTCCACGCA-CAATCAGTTTTGGGT-TTGATCTCGTTTT
i caeSp111.Scaffold626  I 72 I 153
s caePb3.Scfld02_0       3924757 34 +  4147112 ---------ACTGCACAAACCCAACAATTATCA---TTGTTCTC---CT
i caePb3.Scfld02_0      I 3 I 32
s caeJap4.Scaffold18213    36565 44 -   720316 ACACTGATAATAGAATAAAAtgcaaaactatttttgacgATCGA-----
i caeJap4.Scaffold18213 C 0 C 0

a score=-29557.000000
s ce10.chrX              5671180  79 + 17718866 GCTAACCTTATGTTAGATTTG-------------CAGAACAGCCAGAAGAG------------AACT----TTGTTGCTCCAA------------------------------CATTCTGTACTTGTAGAGAAAGTGA
s cb4.chrX              10972267  84 + 21540570 TCAaccttcaatttttatgagtttACGCAGAAATAAGAAT-----GAGaaa---------gacaaat----tttttgtttgtg------------------------------tATTT------TGTGAAGCATCTGG
i cb4.chrX              I 6 I 27
s caeRem4.Crem_Contig0   2383895 121 -  4500979 GTTATCTAC-ATATAGCTTggttaatttgaaaatcaaaacatcCGGAGAAA-CTGTTTGTGGCAACA----TTGTCATCTATGACATAA--------TGCTGATAACCCGAACTATTTT---TGTGCATAGCGTTTGC
i caeRem4.Crem_Contig0  I 6 I 15
s caePb3.Scfld02_0       3924823  96 +  4147112 acaaactcc-------------------------aaaaatattttgagaaaactgtaGGTAATAAC------------TCATAAAACAAATGTACCTCACTGATAACCCCGACTATTTT-----TGTGCATTGTCTAT
i caePb3.Scfld02_0      I 32 I 15
s caeJap4.Scaffold18213    36609  31 -   720316 ---------------------------------------------------------AGCGACAAttgccctttttttttgtc------------------------------tccct--------------------
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    223373 153 -  1189296 I

a score=86491.000000
s ce10.chrX              5671259 173 + 17718866 TGCCACTCATTGATAA-------------AACAAT-----TCCCTT---TTTTTCAA------AACTACCATT-------G---------------T------AG----------CACAAACATGTTTGTCCC---ATTTTTTCAGCACGTCAGCAACAACCGGAATTTCTGATTTTCCCGATATTCTGGCACAAACTGAACACGGCTGTTCTGTACTAATAGACGGAAATCACTTAAGGT
s cb4.chrX              10972378 226 + 21540570 ACTCTTTTACTGATAAC----------CTGACTATTTTTGGCGCCCCTGCATTTTTGTAAAACGACCGCCATTCGTTGATGATAAAACAAATGTACTTTTACAAACTACTTCGATCGCAAACATGTTTGTCC-----TGGTTTCAGCACCTCTGCGACAACCGGAGTCTGTGATTTTCCCGACATACTTGCTCAAACGGAACACGGGTGTTCTGTGCTAATCGACGGAAACCATTTAAGGt
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   2384031 187 -  4500979 TGTCATTTGTTGATAA-------------AACAAT-----GCACACGCACGTTTTTG------AACTACCATCCATATCTG---------------TGTCACATA----------CACAAACAAGTCTGTCT-----TATTTTCAGCACGTCTGCTACAACTGGAATCTCAGATTTTCCCGATATACTTGCCCAGACCGAACACGGTTGTTCTGTTCTGATTGACGGAAATCATTTGAGGT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626    223526 178 -  1189296 TCTCAATTGTTGATAA-------------AAGAAT-----GCACAC--TCGTTTTCA------AGCTACCGTC-gcgcttt---------------ttttttcga----------caaacACAT-----TC------AATTTCCAGCACGTCAGCCACAACTGGAGTTTCTGACTTTCCCGATATTCTTGCACAAACTGAACACGGTTGTTCTGTTCTAATTGACGGAAATCATTTACGGT
i caeSp111.Scaffold626  I 153 I 30
s caePb3.Scfld02_0       3924934 175 +  4147112 ------TGATTGATAA-------------GAAATT-----GTACAC--GCTTTTTGA------AGCTACCGAC------TT---------------TTTTAACGA----------CATAAACATAGTTGTCCG---GAATTTTCAGCACGTCAGCTACCACTGGAGTCTCTGAATTTCCTGATATTCTCGCACAAACGGAACAGGGCTGTACAGTTTTAATTGACGGAAACCAATTGAGGT
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18213    36640 194 -   720316 tGCTATTCGTTGATAGCAGCCGCATTGCAAACGAT-----GCTCCA---CCGTGCGA------AGCTACCGTC-----------------------TTCATTTTG----------CCCAAACATGTTTatctgttttgtttttcagcacGTCAGCCACAACCGGAGTGTCTGATTTCCCGGACATTCTAGCGCAAACCGAACACGGCTGTTCTGTTCTAATTGACGGAAATCATCTTAGGT
i caeJap4.Scaffold18213 C 0 C 0

a score=-18468.000000
s ce10.chrX              5671432 51 + 17718866 AATATTGTTTTTTTTAATTATAAAACTTTTTGACGGTTCAAAAATACATAT---------------------
s cb4.chrX              10972604 31 + 21540570 ----------------aatcaaagtttttttggCAGATGCGTAATGA-------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2384218 30 -  4500979 -------TTGGTAATAAATCAAA----------TGAATAGTCTATGA-------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3925109 31 +  4147112 ----------ATGTTATTTGACA----CCTTCATTAATCTCTCAT---------------------------
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213    36834 66 -   720316 --AAGACTTTTCTTTTATTGATAATTATTTATGTGTAGAAGAAATTG----AGTTGTAGCAAAACcatacaa
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    223704 30 -  1189296 I

a score=151198.000000
s ce10.chrX              5671483 230 + 17718866 TTATTCAATTTT-CAGAGAGATTATCAATTCAGTGGATACGCAAGACGGAAAACAAGATCTATTATCAGACGTTATCCGACAGGTATTTTAAGTTACATCTCGTGAAAGCGATTTCTAC-------CTCATTCCCTAAT---TTTGCAGCTGACATCAATAAAAGAGAGGTTAACAAACGACGAGAGTCCTGTCAAAGACGATTTAAAAGAAGATCCTG------ACGACATGAGCCCGGTAAGTCG
s cb4.chrX              10972635 237 + 21540570 TGATCGGTATTT-TAGGGAGGTTATTAACTCGGTAGGTACGCAAGACCAAAAACAGGATCTTCTATCGGACGTCATTCGACAGgtattttaagaaaaaactcGTGCGACAGA-TTTTGA-------CGAA-ATCTCggttatttttcagttgacatcCATAAAAGAGAGGTTAACAAGCGACGAGAGCCCGGTTAAAGACGAATTAAAAGAGGATCCTGACGACAACGACATGAGCCCGGTAAGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2384248 230 -  4500979 TTGTTGGTATTT-TAGAGAGATTATAAACTCGGTGGATACACAAGACGGAAAGCAAGATCTATTATCGGACGTCATTCGACAGGTATTTTAAGACTCAGCACGTGCAGAAGATTTTTGA-------CG---AtccaaataaaatttcagttgacATCAATAAAGGAGAGGTTAACGAGCGACGAAAGTCCCATCAAAGACGATTTAAAAGAAGACCGTG------ACGACATGAGCCCGGTAAGTCG
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626    223734 230 -  1189296 TTCTTGGTTTTC-CAGTGAGATCATTAATTCAGTGGACACTCAAGACGGAAAGCAAGATTTGATATCAGACGTCATCCGACAGGTATTTTGAGACAAAACTCGTGTAAAAGATTTTTGA--CTTGACg---acgaaaat---ttttcagttgacatCAATAAAGGAGCGGTTAACAAACGACGAAAGCCCTGTTAAAGACGATTTAAAGGAGGATCCTG------ACGACATGAGTCCGGTAAGT--
i caeSp111.Scaffold626  I 30 C 0
s caePb3.Scfld02_0       3925143 230 +  4147112 TTCTTGACGTT--TAGAGAGGTTATTAACTCGGTGGATACTCCAGACCAGAAGCAAGATTTAATAACAGACGTCATCCGACAGGTATTTTAAAACCAAACTCGTgttaaagatttttgaatcttcacg---atcaaaa----ttttcagttgacatcAATAAAAGAGAGGTTAACAAACGACGAGAGTCCCGTTAAAGACGAATTAAAAGAGGATCCTG------ACGACATGAGCCCGGTAAGT--
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213    36900 175 -   720316 aaattaaaatttccagaGAAGTGATAAATTCTGTTGATACACAAGACGGTAAACAAGACTTGCTAGCCGACGTCATCCG-----------------------------------------------CC---AACTCAAC----------------TCAATAAAAGATCGAATCATAAACGACGATAGTCCAATCAAAGAAGAATTGAAAGAAGATCCAG------ACGAGATGAGTCCGGTAAGTGA
i caeJap4.Scaffold18213 C 0 C 0

a score=-2975.000000
s ce10.chrX              5671713 20 + 17718866 TCAGCTCAGCGTGCGTGCCT
s cb4.chrX              10972872 16 + 21540570 --ACCCT--CCtccttctct
i cb4.chrX              C 0 I 9
s caeSp111.Scaffold626    223964 16 -  1189296 --AGCTC--TATTCTCGACG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3925373 16 +  4147112 --AGCTC--TATTCTTGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    37075  8 -   720316 -----CC--CATTCC-----
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2384478 19 -  4500979 I

a score=2768.000000
s ce10.chrX              5671733 422 + 17718866  
s cb4.chrX              10972897 374 + 21540570  
i cb4.chrX              I 9 I 36
s caeRem4.Crem_Contig0   2384497 374 -  4500979  
i caeRem4.Crem_Contig0  I 19 I 2
s caeSp111.Scaffold626    223980 410 -  1189296  
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3925389 425 +  4147112  
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213    37083 416 -   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=-6498.000000
s ce10.chrX              5672155 32 + 17718866 TCTTTG---CAACAATAAAGTCATGTGGCCTATGG
s caeRem4.Crem_Contig0   2384873 16 -  4500979 -----------TCTA--------TGTGGCCCTTGG
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    224395 32 -  1189296 tatttg---actttACAAAGTGATGTGTCTTTCTG
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3925819 23 +  4147112 tattt------ttta------aatgtttgcCTCTG
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213    37499 34 -   720316 tctttgttttttttactgcataactttctttttt-
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              10973271 36 + 21540570 I

a score=928676.000000
s ce10.chrX              5672187 1829 + 17718866  
s cb4.chrX              10973307 1828 + 21540570  
i cb4.chrX              I 36 C 0
s caeRem4.Crem_Contig0   2384889 1813 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    224427 1819 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3925842 1824 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    37533 1816 -   720316  
i caeJap4.Scaffold18213 C 0 I 8966

a score=-169.000000
s ce10.chrX              5674016 2 + 17718866 GA
s cb4.chrX              10975135 2 + 21540570 aa
i cb4.chrX              C 0 I 28961
s caeRem4.Crem_Contig0   2386702 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    226246 2 -  1189296 GT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3927666 2 +  4147112 GT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    39349 8966 -   720316 I

a score=1983.000000
s ce10.chrX              5674018 6 + 17718866 ACAAGA
s caeRem4.Crem_Contig0   2386704 6 -  4500979 GTAAGA
i caeRem4.Crem_Contig0  C 0 I 7001
s caeSp111.Scaffold626    226248 6 -  1189296 ACATGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3927668 6 +  4147112 ACAAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    39349 8966 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I

a score=12866.000000
s ce10.chrX              5674024 68 + 17718866 GAACAAAACATCATAATATTCGGATTATGGTAGGAAATGTGCATTATGAGTTACAGCCGGAAATGAGA
s caeSp111.Scaffold626    226254 61 -  1189296 GAACAAAACATCACATTATATGGATTATGGTAGGAAATGTGAATTATG-------GAAGGAAACGAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3927674 61 +  4147112 GAACAAAACATCACATTATTTGGATTATGGTAGGAAATGTGCATTATG-------GCAGGAAATGAAA
i caePb3.Scfld02_0      C 0 I 5023
e caeJap4.Scaffold18213    39349 8966 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=29.000000
s ce10.chrX              5674092 3 + 17718866 AGA
s caeSp111.Scaffold626    226315 3 -  1189296 GAA
i caeSp111.Scaffold626  C 0 I 2257
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    39349 8966 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=0.000000
s ce10.chrX              5674095 3152 + 17718866  
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    39349 8966 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    226318 2257 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=2059.000000
s ce10.chrX              5677247 31 + 17718866 CTGCTGCGAGTTCTCATTTCGCTCTTCGGAC
s caeJap4.Scaffold18213    48315 31 -   720316 CTGCTCCGAGTTCTCAAATTGCTTTTCGGAC
i caeJap4.Scaffold18213 I 8966 I 167
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    226318 2257 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=0.000000
s ce10.chrX              5677278 983 + 17718866  
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    48346 167 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    226318 2257 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=5005.000000
s ce10.chrX              5678261 102 + 17718866 CCGTAATGGAATGTCAGTTCTGAGCCGGCTGGAATGGTTTCCTTTGCAAACAGTACAATGCGCACGTCGGCAAATGAAAATCCTCCTTGGAAGACTCTGAAA
s caeJap4.Scaffold18213    48513 102 -   720316 CCATAATCAAATGTTAGTTCACTCCCAGCTGGAATGTCTTCGAATGCAATCATTACGATGCGCAAATTAGCTGGTGAAAATCCTCCTTGAAACACTCTGGAA
i caeJap4.Scaffold18213 I 167 I 4881
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    226318 2257 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=0.000000
s ce10.chrX              5678363 300 + 17718866 GCACAGCAGATTACGACACAACGATTAGAATAGTGAGTGGTTTTTAAATAAAGTTTATATTTTTGTGGCAGTGCTTTTTGTGGCAGTGCTTTTTGTGGCAGTGCTTTTTGTGGTTTTGTAGACAAAGGAACTTGAAAAGCAGTTCAGCTTTGAGTTATTAACAAAAAAGTAGGTGGTATAACTTCTTGGAATTGTTTCAAGCGAAACCTTAATTGTTCACGATCATGTTTCATTTTAATTATTCGCAAGTTTGAAAAAAGACGCTAAGCTTATTTTCATTAAAAAAAAAACATTGCCACA
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    48615 4881 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    226318 2257 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=247.000000
s ce10.chrX              5678663 50 + 17718866 CTTTTTGACGCTTTCTACAC----TACCCACCTTCCAAGTTCCAGGTTTGCCTG
s caeSp111.Scaffold626    228575 54 -  1189296 ctttttcatattttttcaaccGAATCCTTACCTGATTAGGGTCAAATTCGGGTC
i caeSp111.Scaffold626  I 2257 C 0
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    48615 4881 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=5766.000000
s ce10.chrX              5678713 52 + 17718866 GCAAGCATGTGACAGAAACCGAGCACAGTTTCCCTTTTCCAATGGGTTAACC
s caeSp111.Scaffold626    228629 52 -  1189296 GCAGCTGTGGGaaaaaaaGCGGGCAAAGTTTCCCTTTCTCAACGGATTTACC
i caeSp111.Scaffold626  C 0 I 1473
s caeJap4.Scaffold18213    53496 52 -   720316 GCATCCGTGCGAGAGAAAACGAGAAGTACTTCCTTGCTTGACTGGATTAATC
i caeJap4.Scaffold18213 I 4881 C 0
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=1293.000000
s ce10.chrX              5678765 62 + 17718866 CACAGTTTGGTTTCAA---GAGCGTTCTGAAAC-ATGATTATTAACATTTTTTATATCTTCTCAGT
s caeJap4.Scaffold18213    53548 64 -   720316 CACAGTTTGCTTCCAGCGTatgttttctgaaataaaaaatacta--attttttaGTACTTTTAAGT
i caeJap4.Scaffold18213 C 0 I 2437
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    228681 1473 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=0.000000
s ce10.chrX              5678827 1905 + 17718866  
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    53612 2437 -   720316 I
e cb4.chrX              10975137 28961 + 21540570 I
e caeSp111.Scaffold626    228681 1473 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=882.000000
s ce10.chrX              5680732 176 + 17718866 TTTTTAAGAAAATCTCAGAATTAGATGAAAGACCGTCAAATTAAAACATAGTGGTTTCCGTTAGTTGTCGGGCATGCAATCAGTGACACTTCTGATTTCTAGATTTTCTTTGAAAATTTTAATGAC-GACATG-----TTTGAAA---TTTGTGCATTTTTTGCGCAGTAGTTCGAACTCTGGTG
s cb4.chrX              11004098 171 + 21540570 tttttaagaa--tagaagaaacaGGTCCAGGGAGGCTCAATTGG--CTTGTTGGTTCTCGATGTTATTCAGGAACTCGCGCAGTTGAGCTTC------ATAaatgtttttgtaaaatttcaacaGCTGAAATAAACAATATGAAACGTTGTATGTATTTAATA-ACAACAGTTCTA---CTGATG
i cb4.chrX              I 28961 T 26503
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    53612 2437 -   720316 I
e caeSp111.Scaffold626    228681 1473 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=273.000000
s ce10.chrX              5680908 3 + 17718866 AAA
s cb4.chrX              10977766 3 + 21540570 aaa
i cb4.chrX              T 26503 C 0
e caePb3.Scfld02_0       3927735 5023 +  4147112 I
e caeJap4.Scaffold18213    53612 2437 -   720316 I
e caeSp111.Scaffold626    228681 1473 -  1189296 I
e caeRem4.Crem_Contig0   2386710 7001 -  4500979 I

a score=8094.000000
s ce10.chrX              5680911 27 + 17718866 ACTTACATCGTCCAATGTGACGAATGG
s cb4.chrX              10977769 27 + 21540570 actaaCCTGGGCATCAGTGATGAATGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2393711 27 -  4500979 ACTCACATGATTCCTTTTGATGAATGG
i caeRem4.Crem_Contig0  I 7001 C 0
s caeSp111.Scaffold626    230154 27 -  1189296 actTACGTCGTCTTTTCTAATATATGG
i caeSp111.Scaffold626  I 1473 C 0
s caePb3.Scfld02_0       3932758 27 +  4147112 ACTTACGTCCTCTCTTGTCAGGAAAGG
i caePb3.Scfld02_0      I 5023 C 0
e caeJap4.Scaffold18213    53612 2437 -   720316 I

a score=32612.000000
s ce10.chrX              5680938 284 + 17718866 GTACAAAGCTCTATTGGTGATGCAACATAAGCTGGCACACTTGCAGCAATCACCCAACTGCTTGATGATATACTCATCGCTGTATCTGAATGTCACTTCCTGACTCGGGAAAATGGGCATCGTGGAAGTGAAGATCACACGAATATTCCCTGGATTGAATCCCGCGGTGTGGACACTGGAATGTAAA-----------TGATTATTATT--CAAAAAATCGATATGAGAATTTAAAATA----------AAAACCAACAAGTTGAGCTTGACATTTCCCATGCAAGACGAGGAGACAAATCGCCCGA
s cb4.chrX              10977796 271 + 21540570 GAACAGTTTCACGTTGGTAACGCAACATAGCTCTCCGCACAGACAGACGTTGCGGAGCTGTTCCCATATATACTGATCGCTGTAGAACCATGTCACCTCCTGCGTCGGGAATATTGGCATCGTGGCGGTGAAAATGACCCGAGCGTTGGTGGGGCTCACTCCACGTTCGTgaacactgaaaaatatg-----------aatctaTTGGT--CAgt-----------ttattatttca------------aaaacttacaaattcACTTTTGTGTTCCCGAGGCAAGAGGACGACGCGAATCTGCCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2393738 273 -  4500979 GAATAAATGTCGGTTGGTGATGCAGCATAGTTCACCACACAGGCAAATATTCTTCAATTGTGTGGTGACGTATGGAAAGCCATAGAAAAAGCTCAGTTCTTGGTTTGGGAAAATCGGCATCTTCGAGGTCATCATCACTCTGATGTTGGTGGGCGCCAGACCTCCTTGGTAAACGCTGAATAATACG-----------AA--TATTATT--TAGTAA---------CTAATATACCAAG----------AAAATTTACAAGTTGGTTTTAACGTTGCCAAGACACGATGAAGACAAGAATCTCCCAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    230181 272 -  1189296 GAAGAGGTGCATATTACGGATGCAGCACAATTCACCGCACAAGCAGGagtctttcaaatttttataaatgtaTCCacatgaataaaaaaatgaaagctcCTGCTGTGGGTAAATTGGCATGCAAGCCGTAAATGCAATTTCTGCATTTAATGGattgattccatttttatagaCGCTGTAAATTGATA-GTCTCAGAGAA--TGATG--------------------GGTTTTCCCA------------GAAACTTACACGTGCGGCACCAAATTTCCCATACATGAGGACGAAATAAATCGTCCGA
i caeSp111.Scaffold626  C 0 I 5764
s caePb3.Scfld02_0       3932785 274 +  4147112 GTAAAGCTCCCGATTTCTGATACAACCGATTTCTCCACATAGACACGTGTCCTTCAATTGACCGAGAAGATAACCGAATCCGTAGAAGAAGGTAAATTCCTCATTCGGGAAAACGGGCATTATGGAAGTCAACAAGGTTCTCTTGTTCAGAGGACTTAGCCCTTCCGAATATAcactgaaaaagaat-----tcaaaacatttgatgtT----GT-----------ATATCTTCGCA------------AAAAA-TACCTATTAATTTTTAGATTCGGGAAGCACGAATGGGAAATGTATCTTCCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    56049 298 -   720316 GTATAGATGACTGTTGGTCACGCAGCACAACATGCCACATTTACACACATCTTTTAGTTGTTGGAAAATGTAATCAATTCCATAGTTGAACGAGATTTCCATATTGGGAAAGATTGGCATAACGGCTGTGAAGATTGCTCTCGCTCGAAGAGGATTTGCTCCGCCGGAGTAGACACTGGAAatttaaatgcaaaaaaaaacatactagtatcaaaaa---------taaattttcaatattaaaattattaaatttaCATTGTTGTCTTGACATTTGGAAAGCAGGATGAGCTCATAAAACGGCCTG
i caeJap4.Scaffold18213 I 2437 C 0

a score=2776.000000
s ce10.chrX              5681222 30 + 17718866 CGTTCCCCACATACC--GTGGATTCAGACTGA
s cb4.chrX              10978067 30 + 21540570 CGGAGCTCTTATTTC--TCGGGTTGAGACTGA
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig0   2394011 30 -  4500979 GATTCCCTTCAAATC--TCGGATCGAGACTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933059 30 +  4147112 TGTTCCCATAAGTTC--TCGGATCGAGAGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    56347 30 -   720316 --CTGTAGAGAAATCAGTGGGGTTTATACTGA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=-4159.000000
s ce10.chrX              5681252 41 + 17718866 GAGGCGTTTCGTGTAGCTCCT----GAAAAATGGCAGCTTAAGAA
s caeRem4.Crem_Contig0   2394041 41 -  4500979 TGGTTGTCCCGAGAGTACCCT----GAAATCTAGTTTTCTGTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933089 36 +  4147112 AATCCGTTTCCATAACTTTCTGCAAGAAATATAG---------AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    56377 39 -   720316 AGTCATTTTCGTATAAATTCT----GTAAAAGCG-GGTTTATAA-
i caeJap4.Scaffold18213 C 0 I 40
e cb4.chrX              10978097 218 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=-1242.000000
s ce10.chrX              5681293 37 + 17718866 TATTGAAAAAAATCTCAAACGAACGAGGATTGACG----AT
s caeRem4.Crem_Contig0   2394082 31 -  4500979 TAT---------TTTCCAAC-AGTTAGATATTACCGTCAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933125 27 +  4147112 TGT---------GCTTAAAC-ATCGAGAAAATATT----AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    56416 40 -   720316 I
e cb4.chrX              10978097 218 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=-11646.000000
s ce10.chrX              5681330 149 + 17718866 -----GTGTATTTCTTGTTCACAAAT----GGCGGATA-----------TTTCTTGACAGACTTCTGCTTTTTGTTCGTGTCAATTATTGCT---GCAAGTTGATA---TTTGTCCGTATCGTAGACAACGTCAAGAGCATATGTATCTTCATCGGATATTGA--------CGAAGAAACCAC
s caeRem4.Crem_Contig0   2394113 162 -  4500979 -----GTGTCTTTAACGTCCTCTGAT-----------aacatcttcaatttttttgattca-gccagttttttattttggttGAATAATTCCAAGATACACTCCTT---GTCTTGGTCTTTGTTGTAGATATCGAGAGCGTAGTTATCGTCATCTTGAAGGGATTTAACTCGACAGTAACTA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933152 170 +  4147112 -----ATACTTTCAATGTATTCTGGTACGTAGCGGTCAAGCCTTTTACTCTATCTGAGAGA-TTCAGCTTATTGTTTTGTTCCAATATTGCCATCGTAAgcttttg---ctcatttttaacaCAATAACTGTCAAATGCATAAGAATCAttgttctccattttttccgtttcgcGAAAA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    56456 146 -   720316 ATGTAACTCTTTGAGTATTTCTTAAC-----------------------GGTTTTGTGAGC-TCCAATGAAT--TTTCCatccaaaaaatcc---aaaagttCTTTGCCGTCATATTCCGCGTTGAATATATCTATTGCGTAGGGATCGTCTCTGGCAAGCGTGTTTGTT-GGCAC-------
i caeJap4.Scaffold18213 I 40 C 0
e cb4.chrX              10978097 218 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=12416.000000
s ce10.chrX              5681479 38 + 17718866 ATACTCTCCAGTCATTTCTACTACTGCTTCACCTAAAA
s cb4.chrX              10978315 38 + 21540570 ATACTCTCCTCTCATCTCTGCCACTGGCTCGCCTGTAA
i cb4.chrX              I 218 C 0
s caeRem4.Crem_Contig0   2394275 31 -  4500979 -------CCAGTCATGGTAGCTACTGTTTCGCCTGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933322 34 +  4147112 ----ACGCCTCGGAACTCCACCGCTGTTTCACCTTAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    56602 38 -   720316 AAGTTCTCCAGTCATTTCTGCTACTGTTTCGCCTAGAA
i caeJap4.Scaffold18213 C 0 I 319
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=713.000000
s ce10.chrX              5681517 4 + 17718866 AAAA
s cb4.chrX              10978353 4 + 21540570 ATAA
i cb4.chrX              C 0 I 218
s caeRem4.Crem_Contig0   2394306 4 -  4500979 ATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3933356 4 +  4147112 CAAA
i caePb3.Scfld02_0      C 0 I 109
e caeJap4.Scaffold18213    56640 319 -   720316 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=60.000000
s ce10.chrX              5681521 2 + 17718866 TT
s caeRem4.Crem_Contig0   2394310 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 I 166
e caePb3.Scfld02_0       3933360 109 +  4147112 I
e caeJap4.Scaffold18213    56640 319 -   720316 I
e cb4.chrX              10978357 218 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=0.000000
s ce10.chrX              5681523 541 + 17718866  
e caePb3.Scfld02_0       3933360 109 +  4147112 I
e caeJap4.Scaffold18213    56640 319 -   720316 I
e cb4.chrX              10978357 218 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394312 166 -  4500979 I

a score=91.000000
s ce10.chrX              5682064 1 + 17718866 T
s cb4.chrX              10978575 1 + 21540570 T
i cb4.chrX              I 218 C 0
e caePb3.Scfld02_0       3933360 109 +  4147112 I
e caeJap4.Scaffold18213    56640 319 -   720316 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394312 166 -  4500979 I

a score=29.000000
s ce10.chrX              5682065 1 + 17718866 T
s cb4.chrX              10978576 1 + 21540570 C
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213    56959 1 -   720316 T
i caeJap4.Scaffold18213 I 319 C 0
e caePb3.Scfld02_0       3933360 109 +  4147112 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394312 166 -  4500979 I

a score=546.000000
s ce10.chrX              5682066 1 + 17718866 A
s cb4.chrX              10978577 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3933469 1 +  4147112 a
i caePb3.Scfld02_0      I 109 C 0
s caeJap4.Scaffold18213    56960 1 -   720316 A
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394312 166 -  4500979 I

a score=28964.000000
s ce10.chrX              5682067 138 + 17718866 CTTACCTTGACCAAAGTATTGCTTTGCTCGTACGCAAAAATCTTTTTCCGTCAAGTGGTGGAGCATGATCTCAGTGCCGCCTTTTGGAG-GTTCTGGA------AACGAGATTGCACATTTGCCACGACATTTGCAACTGAAAAA
s cb4.chrX              10978578 138 + 21540570 TTTACCTGGTGCGAAAAATTGTTTCGCGACGAGCGCAAAACCTTTCGCTGTCCGGTGGTGGAAAACGATTTCAGTGGAATTTGCTGGTG-GCTTCGGA------AACGCTTTTTTGCACTTTCCTTTGCAGTTGCAACtgaacaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2394478 138 -  4500979 CTAACCTTGGCCAAAATATTGCAGAGCCCGGCTGACGAATCCCTTCTGGGGAAAGTTGTGAAGGACTGCTTCAGTCGAGTTCTCTGGCG-GCTCCGGA------AATGTTTTCCCACATTTTCCTTTGCATGCACAGCTGTAAAA
i caeRem4.Crem_Contig0  I 166 I 7572
s caePb3.Scfld02_0       3933470 132 +  4147112 ctaACCTTGACCACAATAATGAGTGGACACTGTAACGCAGCCCTTCTGTGGA------TGAACCCTAATTTCTATATTGTTCACCGGCG-GCTCGGGA------AACGAATTAGCACATTTCCCTTTGCAAGGACACCTGAAAAA
i caePb3.Scfld02_0      C 0 I 18923
s caeJap4.Scaffold18213    56961 138 -   720316 CAAACCTGGAGCAAAATATTGCTTAGCTCGAACCGCAAAACCCTTCTCTGTTATGTGGTGCAGCATCACTTCCGTGCCCTCTTCCGGAGCGTCCTTGACGCTTGAACG-------ACACTGGCCTTTGCAATCGCATCTGAAtga
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    230453 5764 -  1189296 I

a score=-884.000000
s ce10.chrX              5682205 39 + 17718866 TTAGTTTATT-------------TATTGCCACAATTGTTGATTTTAATGAAC
s cb4.chrX              10978716 43 + 21540570 ttattttttcat---------gatattGTCAAATCAGTTTGAAGAAACTTAC
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18213    57099 52 -   720316 ataatttattttaagcTTCCAAAAACCGTTATAATTACTTACTCGAAAGAAC
i caeJap4.Scaffold18213 C 0 I 10047
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=565.000000
s ce10.chrX              5682244 13 + 17718866 GTTTTTCTGCATC
s cb4.chrX              10978759 13 + 21540570 GATTCGCTGCACC
i cb4.chrX              C 0 I 41024
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=0.000000
s ce10.chrX              5682257 3824 + 17718866  
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeSp111.Scaffold626    230453 5764 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=9752.000000
s ce10.chrX              5686081 241 + 17718866 AACGCAGCAGTATAGAGAAG---CAAACAAAATGCATTGGTCAGCGAAGGGGCAGGCGGACGCACG---GACGGAAAACGAGGACCCAC---ACATTTCTCTCTCCTATAATACTACTCCTATACGTCTCTATGCCTCTTCATACTCCCGTTTTCTCTAGTTCCCGGCACCATGTCAATGTCCTCCGTCTACCGCACCCTTTTCTTCAACCTCTTTGCACTATGGGCAAGAGAGA-AGATAAAATGAAGAG
s caeSp111.Scaffold626    236217 235 -  1189296 AACGCAGCATCAACGAGACGATGCAAACAAAATGTATTGGTCAGCGAATGGACGGCCCGCTGGACGCTAGAGGGAGTACGAGGACCCACCACACATTTCTCCTTTCCGCTA----------------CTCTAAGTCTCTGCATTTGCCTGTATTCTCTAGTTCCCGGTTTCGTGTCGATGCCCTCCTTTTCCCGCACTCCTTCCGTCAACCTCTGTGCACTATGATCGGAAGAGAGAGGCAAAACGAAAAG
i caeSp111.Scaffold626  I 5764 I 451
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=0.000000
s ce10.chrX              5686322 1068 + 17718866  
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeSp111.Scaffold626    236452  451 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=2063.000000
s ce10.chrX              5687390 123 + 17718866 CTTCCGAAAGAATATAAATTTTACATATTCATAAAG--ATACCGTTCAAATCATTGATTTCTTTTTTGATATGCACAATGAAGACACAACGTGTTTGCTTTTGTGTGCCGTTGGCGGAAAGTGTA
s caeSp111.Scaffold626    236903 121 -  1189296 cttctgaaacaaaaaag----tacGTATCAATGGGGGGAAACCATACATGCGGAGAGTTTAGTTTTCTATATACACCTCAAATGCAATTTATATTTGCTTTTGTACGTCCTTTACGGAGAATACA
i caeSp111.Scaffold626  I 451 I 6458
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=0.000000
s ce10.chrX              5687513 4558 + 17718866  
e caePb3.Scfld02_0       3933602 18923 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeSp111.Scaffold626    237024 6458 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=250.000000
s ce10.chrX              5692071 53 + 17718866 CTGCCATCGTCATTTTCGTTTATTTTTCTATTCAAATTTTGTAATCCTGCATG
s caePb3.Scfld02_0       3952525 43 +  4147112 CTGacattttccttttgtttcgttttattacc----tcttgtg-tcct-----
i caePb3.Scfld02_0      I 18923 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeSp111.Scaffold626    237024 6458 -  1189296 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=411.000000
s ce10.chrX              5692124 16 + 17718866 ATTGTCATTTCTATCA
s caeSp111.Scaffold626    243482 16 -  1189296 Attgtccttcttctcc
i caeSp111.Scaffold626  I 6458 C 0
s caePb3.Scfld02_0       3952568 11 +  4147112 ----ttccttttatc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I
e caeRem4.Crem_Contig0   2394616 7572 -  4500979 I

a score=350.000000
s ce10.chrX              5692140 13 + 17718866 -TATCCAACTTCC-T
s caeRem4.Crem_Contig0   2402188 13 -  4500979 -TATCCAATTTCCT-
i caeRem4.Crem_Contig0  I 7572 C 0
s caeSp111.Scaffold626    243498 13 -  1189296 ttttccaatttct--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3952579 10 +  4147112 ---ttcaatatcc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              10978772 41024 + 21540570 I

a score=66614.000000
s ce10.chrX              5692153 251 + 17718866 ---TTTCTTGTA-----GGTTTTCCCGAAA---AAAAAA-----------AACAATTGAAGAACTCT----AGGTGGCGGCAG---CGTGCGAGTGAGCAAGAG-GAGATAATTGTC--GGGGTGGTTCATCTCTTGCGGTTCCAGAGAGCCAC-------------CAC--------TCTCCAATTC-TTGCAATCGTTCTGTCTGCAACCAACTGCCAAAAAA--TAAAT--------TCG-ATTCACATTTTTTCTCTAAAGTCGC---------TCAAG----GATGGGATCTTCAAACTTTCAATTTGGCTCAGCAGATTATTC
s cb4.chrX              11019796 291 + 21540570 ---TTTTTTGAAGACGTGGCttcctgaaaa---agaaagtggatatgcaaaa------aaaaactctgtgGAGGTGGATGGAAGCTCTCGGGAGTGAAcagaaacgagataattgtt--GGTGTGGTTCATCTCTTGCAATTCC--AGCATCACCGCCGCGGTTGGTCGCACACT---CCATCAATTT-C-----TCGTCCTCTTTTCAACCACGCATCCAAAAAAGAACCG--------CCGTTTCCACC-ATCTTCAGTGAGACGTCATCAGTGTTTGGAA----AATGGGATCTCCAATTGTTTTATTCGGTTTGGCGGATTATGT
i cb4.chrX              I 41024 C 0
s caeRem4.Crem_Contig0   2402201 242 -  4500979 ----GTATTGTA-----GGTTGtctcaaaa---acaatg-----------aa------aataacTCTGTGTAGGTGGAGGCAG---CAAGAAAGTGAACACAAACGAGATAATTGTT--GG-GTGCTTCATCTCT--CGATTCT--AGCATCAC-------------CACATTTG---CCATAAATTT-C-----GCG-CCACTCTTCTGGCACGCATCCGGAGA--AACAG--------TCG-TTATACA-TTCTTCACAGAGGCGTC---------TTGTG----AATGGAATCCTCAATATTTCAATTTGGCTTAGCAGATTATTC
i caeRem4.Crem_Contig0  C 0 I 284
s caeSp111.Scaffold626    243511 258 -  1189296 cctttttttgca-----AGTTGTTCAAAAA---GCAATG-----------AG------AAGAACTTTGTGTAGGTGGCCGCGG---CTCGGAAGTGAACAAAAACGAGATAATTGTTGGGG-GTGGTTCATCTCTCGCAATTCC--AGCATCAC-------------CACATTTTCCCCCATAAATTTCC-----TCG-CTTCTCTTCTGCCACGCAGTC----A--AAacgtcttctctttt-tttcaca-atcTTCACTGAGACGTT---------TTGTG----GATGGCATCCTCAAGTTGTCAATTTGGCTTAGCAGATTATTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3952589 252 +  4147112 ttttttGT---------AGATgtccaaaaaaagacaatg-----------gA------AGGAACTTTGTGTAGGTGGCCGCAG---CTCGGAAGTGAACAAAAACGAGATAATTGTT--GG-GTGGTTCATCTCTCGCAATTCC--AGCATCAC-------------CAC-TCTTCCCCCATAAATTT-T-----GCG-CTTCTCTTCTGCCACGCATCCcga-a--aaaag--------tgg-tttcaCA-TTCTTCACTCAAGTGTC---------TTGCGGACCGATGGGATTTTTCAGTTGTCAATATGGCTTAGGAGATTATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I

a score=2918.000000
s ce10.chrX              5692404 11 + 17718866 GAAACAGGTAC
s cb4.chrX              11020087 11 + 21540570 GAGACAGGTAC
i cb4.chrX              C 0 I 1093
s caeSp111.Scaffold626    243769 11 -  1189296 TCAGCAGGtac
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3952841 11 +  4147112 TAACCAGGTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e caeRem4.Crem_Contig0   2402443 284 -  4500979 I

a score=300.000000
s ce10.chrX              5692415 1 + 17718866 C
s caeSp111.Scaffold626    243780 1 -  1189296 c
i caeSp111.Scaffold626  C 0 I 155
s caePb3.Scfld02_0       3952852 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I
e caeRem4.Crem_Contig0   2402443 284 -  4500979 I

a score=91.000000
s ce10.chrX              5692416 1 + 17718866 T
s caePb3.Scfld02_0       3952853 1 +  4147112 T
i caePb3.Scfld02_0      C 0 I 1729
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I
e caeSp111.Scaffold626    243781 155 -  1189296 I
e caeRem4.Crem_Contig0   2402443 284 -  4500979 I

a score=0.000000
s ce10.chrX              5692417 544 + 17718866  
e caePb3.Scfld02_0       3952854 1729 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I
e caeSp111.Scaffold626    243781 155 -  1189296 I
e caeRem4.Crem_Contig0   2402443 284 -  4500979 I

a score=599.000000
s ce10.chrX              5692961 101 + 17718866 CTACCCCATTTTCAGGTCAGTTGCGGACATTTCATTTTTCTATTTATTTCACATCTGATGTAATTCCTGAC---------------------------------------AACATCATGATGAT------GGTGATGATTTTCAGC
s caeSp111.Scaffold626    243936 146 -  1189296 CTACCCCATTACCATATAAATCACACCCATTTAGTTTCAcatctcttttcaaatctaATTCACTTCatcactatttttttcaatccgAAGATATTTATGCGTGGGCTTggaatttcatgaaatttcaatcaaaaatgctTTTAGGC
i caeSp111.Scaffold626  I 155 C 0
e caePb3.Scfld02_0       3952854 1729 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I
e caeRem4.Crem_Contig0   2402443 284 -  4500979 I

a score=5208.000000
s ce10.chrX              5693062  92 + 17718866 TTACCAGAAAACAACC-TAAAAGC--TTTCAAAAACTG--TTTTG------ATCATAAGATTTTTCGACAACGCGTACTAT----------AACCAACTATTTCCAAGACAAA
s caeRem4.Crem_Contig0   2402727  91 -  4500979 TTcccaaaaaacaattataagaGC-----CAAAAACCA--ACTTC------ATCATGAGCTTTTACACCAACGCGTAGTATTGG---------GGAAACATTTCTAAGACAAA
i caeRem4.Crem_Contig0  I 284 I 336
s caeSp111.Scaffold626    244082 111 -  1189296 --CCACGAAAACAATCTGACAAGCAAGAgtaaaaactattatttcCTGTTGATCACGAGATTCTAAGCCAACGCGTACTATCcgacaaaagaagaagaaatttctaACGAAAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3952854 1729 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I

a score=-1067.000000
s ce10.chrX              5693154 243 + 17718866 TTTTCTTCCACCCACGAATAACATTTGTAACATCTCGTGCTTAAAATGAAGCATAAAAAAAGTTTAATTCTGATGTGATATTTCAATTTTTCAATTTCCTGCCGAATTTTAGTGTGGCCTAAGAATTGTTTGGTTCACTTACTCATGA--------------------------------------------TATTTCAATATTTTCAGTGGCTACACACATCAACATACAGT-------GTTA-CAGAAATGAATACGGTGAGAGATTGTTTCCGTGTAG-------TTTACAATTATGC--A
s caeSp111.Scaffold626    244193 272 -  1189296 TGTCCCTCC------------CATTT-----CCCTCGTGCTGGTCATGGAAcacaaaag----ttttttcgaagGCCATGCTTCTCtgttttagttttc-----aatttc--tgttcTCTAGCAATACAATCGCTCATTTGTTAGTAAACACTGCTACACAAATACAACTACAGTATACTTATCTAATTGATTATTTCCAGATAATCGATAAGTGCAATCA-CAACATGCCGTCGGCCCCGTTGGCGGAAAGCAGCAAGGT---ATATTTTAAACGTCTAGAGACAGATTTATTAACATGCtga
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       3952854 1729 +  4147112 I
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I
e caeRem4.Crem_Contig0   2402818 336 -  4500979 I

a score=1753.000000
s ce10.chrX              5693397 88 + 17718866 TTTTAGAATATGCTGCACAACATCAAAACCTTTGGCCAACTTCTGAAACTATTTTCGGTTAG---------TTGTATGCTACCAAAAGGCTATGCAT--
s caeRem4.Crem_Contig0   2403154 86 -  4500979 ttacagaaaacaCTGTCAGATGTCAAGTCATTTGGAGAACTGGTGAAAACGTTTTCTGTAAg-----------taaaaattccgaaaactcAGACTT--
i caeRem4.Crem_Contig0  I 336 I 1
s caeSp111.Scaffold626    244466 94 -  1189296 attcagaaaacgCTCCATGAAGTCAAGAAGTTCGCTGAGGTGGTGTATGCTTTCGCCGTAAGAAGTTTTGTCTTGAAATTTCCACAAATCAAT-----C
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3954583 84 +  4147112 tttcagaagaagctcCAGGAAATCAAGCAATTTGCAACGCTTGTTCAAGCTGTCGGTGTAAG---------------TTATCCACGCATCAATACTTCT
i caePb3.Scfld02_0      I 1729 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I
e cb4.chrX              11020098 1093 + 21540570 I

a score=-1469.000000
s ce10.chrX              5693485  7 + 17718866 --TGTAA------TT
s cb4.chrX              11021191  9 + 21540570 TGTAATT------TT
i cb4.chrX              I 1093 C 0
s caeRem4.Crem_Contig0   2403241  9 -  4500979 TCTATTA------AT
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    244560  7 -  1189296 --TACAA------TT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3954667 13 +  4147112 --TATAAAAACTGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    57151 10047 -   720316 I

a score=44646.000000
s ce10.chrX              5693492 277 + 17718866 TTCTTCAGGAAAAATTTGG---CGGACACCCTGAAGAGAAACGTCTACCACCCATGATTTTATTTGTGAAAAATTACCTCCGACACTACTCGATTGCATTGATTGATCAGACGATAGACTTGGAATCCAGCAATTCATTCTCAACAAATGAGGTAAGAAAAA--TACATAAGAGTATAGA-------TGGTATAAGC--AATATTTTCAGAAT---ACCATGGAAAGTCTAATAGAGTCGTTCAGGAAGCTTTACGA------------GTCATACATGTCTGTATTTCAAGAAGATCAAAGTAAG
s cb4.chrX              11021200 252 + 21540570 TCTATCAGGAGAAAATTGG---TGGATCTGCCGGAGCACAACGCCTGGATCCGATTGTGCTGTTTGTGAAAAACTATCTTCGCTATTATTCTCTTGAACTTCTTGATCAAGTCAGCTCAGTGCAATTCAAGAATTCTCAAGTGTTCTTCGAGGTTAGTTACG--GTTATTAAA--------------T-----------GATGGTTACAGTAAATGATCTAATAGAAC------GCTGCCAATGCTGAGCGAAACacgatttttttaatgttttggatttttggcttC------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2403250 265 -  4500979 TC---CAGGAGAAACTTGG---TGGTTCACCAAAAGAACAGCGATCATCCCCACTGATTCTGTTTATCAAGAACTATCTCCGTTACTATTCGACTACATTGATTGATCAAGTCATTGATCTGGAATTCAGAAACTCTTTCTCATTGTTTGAGGTCGGTGAAGAAAGTATAAGA--------------TTTGGAGAGtggaatgttttcagaaa---agctcaaaaaacctGATGTCTGCATTTGAGAAACTGAACGC------------GTCCTACACTTCGATTTTCCAAGAAGAACAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    244567 275 -  1189296 TC---CAGGAAAAGATCAAAAGTGGACCACCAGGAGAGCAACGTTTGATTCCGATTGTGTTGTTTGTGAAGAATTATCTCCGCCATTACTCAACTGCTCTCATTGATCAGGTCATCGACATcgagttcaaaaattcactCTCATACTTTGAGGT------------TaccagaaaaacaaagaccA-TActaaatttcttttgttttcagagg---tCATACAGTGCTCTTATGGACGCCTTCGTCAAGCTTAACAA------------CTCGTATTTATCAGTCTTCCAAGACGAGCAAAGTGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3954680 277 +  4147112 TC---CAGGCTAAGATTGC---TTGTCAACCCGGGGAAGAACGTATGATGCCAGTGGTCCGTTTCGTCAAGAATTATCTTATTCACTACTCGACCGCTTTGCTCGATCAAGTCATCGATCTCCAATTCCGGAACTCGTATTCGCTCTTCCAGGTTGGT------GATGTCAGAAAACAATCTGtcattgagaaaattcaaatg--ttcagaAA---TCTCGCCAGAGCCTCATGGAAGACTTCGAAAAACTCGAGAC------------AACCTATTCATCTGCCTTCGAGGATGAACAAAGTGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    67198 275 -   720316 TTCCACAGGAGAAGATCGG---GAGCAGCTCGAAAGAACAACGACTTCCACCACTTCTTCTATTCGTAAAAAATTATCTCCGCTACTACTCAACTGCTCTTATCGATAAAGTTATTGACGTGGAATTCAAAAACTCTACTGCAAACTTTGAGGTAGTCTAAA-----ATCAAACTATGGATTGCA--TTTCAAAAGC------ATTTCAGGCT---ACTTTGAGCACTTTGATCAACGACCTTTACAAGTTGGACGT------------TTCTTTTTCCTCGATCTTTGAGGAAAAGCAAAGTGAG
i caeJap4.Scaffold18213 I 10047 I 803

a score=166.000000
s ce10.chrX              5693769 14 + 17718866 TTTTTTTTATTTAA
s caeSp111.Scaffold626    244842 14 -  1189296 TTCTGAcatttaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3954957 14 +  4147112 TGTTGTCTTTGTGA
i caePb3.Scfld02_0      C 0 I 1731
e caeJap4.Scaffold18213    67473 803 -   720316 I
e cb4.chrX              11021452  0 + 21540570 C
e caeRem4.Crem_Contig0   2403515  0 -  4500979 C

a score=-6775.000000
s ce10.chrX              5693783 51 + 17718866 TGCAATTTTAACAAGTTCCGAAATTGAAAATATTCGGCAAGCGAAACCAAT----------
s cb4.chrX              11021452 38 + 21540570 -----------TGGgcctaaaaaattga-----------gaaagtag-AATTTTCGGTTTg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2403515 49 -  4500979 ---------AGTGAGTCTCAAACGTTAATACGTTTTTATGAAGGTAGTAATGCTTGGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    244856 39 -  1189296 ----------atcaattttgaaaaggaa--tgaaTCTAAGACGAAACCAAT----------
i caeSp111.Scaffold626  C 0 I 1046
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I

a score=-7487.000000
s ce10.chrX              5693834 216 + 17718866 GGCCGTTGccgaaaattgcctgcaaattttttttttgcaattttttttttcaataattccaattttaaactgc------aaaatCAAAAAAATCATATAAAGGACCAGATTTATCATAAATATTAAGAGAATTCTATTTAAAAAAAAACGGAAGAAAATTTGAAAAATACACAGCGTGAttta-----------caaaaattttacaaaaaat--tttacaaaaatttCA------AGATT
s cb4.chrX              11021490 197 + 21540570 ---ggttccaaaaaaaaatccggaa-------------caTCACTTTTTCCCATACTTGC----TCAACCTCCTGGCCGAAACTCCAAAGaat----------accaatttttttgtCCATCTTGGATAATTacgattttgaagt-------------tttggagcaCACGAGTTGCCTATTAAAGCTGGAAGacagaaattttcgataaaatatttgcaaaaaatttctctcaaaaaat-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2403564 123 -  4500979 ---ggttgcaaaa----------------------------ttttttgttttagaattat-------------------AATTTCAACAGAAT----------A-------GATTAGCC--CTAGAGGAATCTCGATTGTAAAAC---------------------------ATTGCTGATTGGATCATTTAG-cagaaa---------------ttaagaaaaatttcc------GAATC
i caeRem4.Crem_Contig0  C 0 I 112
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I

a score=-405.000000
s ce10.chrX              5694050 179 + 17718866 TTATTTCAAACTCTTCAAAAACAAAAAAACCGAAAATGCGTGTGTCCAGTATTAAGCATATTTGGACGATATATTACCAGAAATTTTCACTTCGTCGGTTTTTAGCAAGCTGAAACCTTTTTCCGCTCAAACGTTAACTGGCAACATGAGCTTATAACCAGTTTTTCTCATAAATTTAT
s cb4.chrX              11021687 144 + 21540570 gtctttcaaaaatttctcccAGGACAGGGCCGCAAA---ATGTATGCtgttttgtgaa-atttcgacaaaacagtttttgaaa---------aaccatttCTCATCTACTTGAAACACATCTTT--TCAGAAG---------AACATGAGC--------GGTCTTaccaagaaatt---
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I
e caeRem4.Crem_Contig0   2403687 112 -  4500979 I

a score=1593.000000
s ce10.chrX              5694229 8 + 17718866 CGAAAAAC
s cb4.chrX              11021831 8 + 21540570 cgaaaagc
i cb4.chrX              C 0 I 44
s caeRem4.Crem_Contig0   2403799 8 -  4500979 cgaaaaaa
i caeRem4.Crem_Contig0  I 112 C 0
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I

a score=-183.000000
s ce10.chrX              5694237 26 + 17718866 AAATTTCC--TGGTTTCGAAAATAACCT
s caeRem4.Crem_Contig0   2403807 22 -  4500979 atttctccattagtgttgaaaa------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I
e cb4.chrX              11021839 44 + 21540570 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I

a score=-2300.000000
s ce10.chrX              5694263 168 + 17718866 CAAAAATTGAAAATGTTTATTCTTACACTGAACACCTCGTATATTTT----CAGTTTCACAATATGCCAACTTAGCGTTACAAGAACTGATGAACGAGAAGCACACTCTTTGAA----------------AGT-------ACTA-----CGGAACTCCTGTAACTATAC-----------GCATT--TACGACCTGTATT---TCTTTGTAA--TTAG
s cb4.chrX              11021883 195 + 21540570 CACTAATTGTACTATTTCATCATAACATT-----TATCAATTATTTTATTCCAGTTGCCAATTACGCCATCGCCGCTCTCCAAGACATTTTGGGTGAGGCCCacgacttctgaa----------------aatcttgacaACTTCTCAACAAGATCACAGTGTATATACCCGGggttttttcatcaattccATTTGTACGT--TCAATATAAATTCAA
i cb4.chrX              I 44 C 0
s caeRem4.Crem_Contig0   2403829 186 -  4500979 ---aaagagta------tatCATTgtact-----ttttgatattttt----cagttgcCAGCTACGCTACTAGTGCAttgcaaaaaatcatgaaCGAGACTACTGGATTCTGAACAAATGATACGGTTCCAATCTTTTCCACTC-----CGAAATTAACAAATGTGTACATTaaattgttgtatt-------tttgtattttctcaaagtaatttt--
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3954971 1731 +  4147112 I
e caeJap4.Scaffold18213    67473 803 -   720316 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I

a score=-394.000000
s ce10.chrX              5694431 31 + 17718866 CTATTTGT---ACAAAAATGTATGttta-----ttaaaa
s cb4.chrX              11022078 32 + 21540570 CTACTAGT---ATGAT----TTTGTTTAATTGTTTCATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2404015 18 -  4500979 ------------taaa----tatgtttA-----TTAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3956702 31 +  4147112 ---CTAGTTCAATAAAAATccatattta-----ttcaaa
i caePb3.Scfld02_0      I 1731 C 0
e caeJap4.Scaffold18213    67473 803 -   720316 I
e caeSp111.Scaffold626    244895 1046 -  1189296 I

a score=-8175.000000
s ce10.chrX              5694462 123 + 17718866 -----aataaaat------ataattttgaaattttGAAACATGCGTTACACCTTTGAAATCTATAAATGACACCATTC----GCATAAGAGCAATGTGTGTTGAG---AGAAAAGTGTCAACTGAGATTTACAAAAATTTC
s cb4.chrX              11022110 106 + 21540570 taaaaaattaagtaataaacgaattgta---ta---------aaagtgttgactaaaaatcaaaaaatgacactAATC----AAAGTAGAGCATTATGTGTCAGT-------------------GAATAAATAAAAAGATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2404033 117 -  4500979 CATAATAATGAGT------TGAGTTGTATTTTC---------ACAATGTTTTCGCACAACTCAAGAATGACACTATTCATTAAAAGAGCAGTAGAATGTGAAAATTAGAGtag---------aagaaaatataaaaatctc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    245941 108 -  1189296 -----aagaaaac------ataataaggaaaat---aaa---aaattgtatttatGCAACTCAATGTAAACACCCATC----ACAATAGAGCAAGTTGAATTgag---agaat---------tgagaaaaataaataaatg
i caeSp111.Scaffold626  I 1046 C 0
s caePb3.Scfld02_0       3956733  99 +  4147112 -----aattgaat------tgaattgtgTATCT---------TGATCGATTTCATACAATTCAGTGATGACACCAATT----GCAA------AGATTAAGTGAGT---AGAAG---------CGTCAATAATAAAtatagg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    67473 803 -   720316 I

a score=48218.000000
s ce10.chrX              5694585 184 + 17718866 AAG--------ACAAAAAATAACCTACTGG--AACTAGTTGGGTTATGGCAGGGTCCCAACA-GCAGAAAATACA---------AAACATAACAAAA--GCAATG-GTAAGTCCCGAACAGGTAATAC-AGTAATTCAAAGAATGAAGGGAGAAGAAAGAGAC-TGGGAA------AGAGATCTA----TCTGAAAAGAC-ATTGAATTA---TACAGGTA--CA
s cb4.chrX              11022216 193 + 21540570 ATCTGGG----GAAAATGGATACctactggaaaaaaagttgggtTATGGCAAATGCCCAACA-CATAAAACTGTg-------gaaaaaacatcaaaa----------cgtGTCCCGAATTGGTAATAC-AATGAG-TGAAATTCAAGATTAAGAGACAG-AGT-GGGGAGCGAGCAAGAGATCTATTTTGTTGAAAGTGCAGTTGTATTA---TACAGTTAA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2404150 194 -  4500979 gTATAGAAATCGGAAAGAAATACCTACTGG--AACAGGCTGGGGTATGGCAAATTCCCAATG--GTTAAACGACA-------GAATTgacaacaaaaaagcaaag-GTGAGTCCCGAATAAGTAATAC-AATGAT-TCAAAATCAAACATAAGAGAAAGAAGT-GGAGGG------AGAGATCTA----ACTGAAAAGAC-GTTGTATGT---TACAGGTATA--
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold626    246049 193 -  1189296 at---------aGGAAAGTTTACCTACTGG--AACTGGTTGGGTTATGGCAAATGCCCAACG-GTTaaaacgaacagagaaagaaaagaaaacagaaaagcaGTG-GTGAGTCCCGAACAGGTAATacaaatgat-tgaaaatcaaagataagagaaagaagttGGAGGA------AGAGATCAA----TGTGAAGAGAC-ATTTGATTA---TACAGGCA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3956832 182 +  4147112 tt---------tcaaaaatttacctaCTGG--AACTTGTTGGGGTATGGCAAATGCCCAACATGAttaaacaaac---------aaataaaaca-aaaagcaatT-ATGAGTCCCGAACAGGTAATAC-AATGATGCAAAAATCGAAAGtaagagaaagaaat--ggggG------AGAGATCTA----TGGGAGAAGAC-ATTGAATTA---TACAGGTA----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    68276 179 -   720316 --------AAATCATAAAATTACCTA---G--AATGTTGGGGATTATGGCAGGTGCCCAACG-gttttaacaaaa-----aagaaaatgaaacaaaa--gcAATGAGTCAGTCCCGAAAAG------T-AGTTTT-TACAGTATAATGCAAAGAAAAAGTGAA-ACTCGA------GGAGATCTA----TCTGAAAAGAC-AATTAATGACGTTAAGAAT-----
i caeJap4.Scaffold18213 I 803 C 0

a score=-3847.000000
s ce10.chrX              5694769 28 + 17718866 TGTTACACATTTTTTGATAAATTATAAA----------
s cb4.chrX              11022409 18 + 21540570 ----------TGTGAGACGATTTTCAAA----------
i cb4.chrX              C 0 I 18
s caeSp111.Scaffold626    246242 17 -  1189296 -----------ATCTTTTAAAGTTGAAA----------
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3957014 17 +  4147112 -----------GCAAGacaagtttcaaa----------
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18213    68455 28 -   720316 ----------AATCATACAAAttaagaaagagaaaaaa
i caeJap4.Scaffold18213 C 0 I 10
e caeRem4.Crem_Contig0   2404344 18 -  4500979 I

a score=1616515.000000
s ce10.chrX              5694797 3443 + 17718866  
s cb4.chrX              11022445 3565 + 21540570  
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   2404362 3499 -  4500979  
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold626    246261 3467 -  1189296  
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       3957033 3490 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18213    68493 3181 -   720316  
i caeJap4.Scaffold18213 I 10 I 12

a score=-5520.000000
s ce10.chrX              5698240 13 + 17718866 CGTACTTTGCGTC
s cb4.chrX              11026010  9 + 21540570 CCCG----AGAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2407861 11 -  4500979 GCTG--TCAAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    249728  7 -  1189296 ------CCGTGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3960523 13 +  4147112 TTCCATTCACGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    71674 12 -   720316 I

a score=106166.000000
s ce10.chrX              5698253 184 + 17718866 AATTAGATTATGA-TGA-GCCAAAGACAACAAT---------AA----------GAACAGTCCCCCCAGGAGGATAAAAAGAACGGCT---------------------CCACCGTTCGAGTC-TATGTTAATGAACGATGC---AATAATAATCAT---------AATGCA----GAAGACAGATGCTTACACAGATGTAC--GGC-----------AAGAAG----GGGTAGGAGTCAAACGGAT---AAGAGGCGTGGCT
s cb4.chrX              11026019 223 + 21540570 CATTAGATTATAG-CGA-GCCAGGAAAAACAAAGGAGCACTGAGGGGGAGGGGTGTACAGT--CTCCGGGGACTAAAGAAAAACGGTG-TGTTTGGTTCTG----------ACTGTTCAACTCGTATGTTAATGAAAGATGC---AATAATAATCAT---------AATGCAGGACGAAGGCAGATGCTTATACAGATGCACGGGTC------GAAGAAATGAGGAAAG-----GAGTCAAACGGat--aaaggggcggagcc
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2407872 234 -  4500979 AATTATATTATGA-TGA-gccaaagaaaacaaa---------agaaggagAGTCGGACAGT--CCccagagagaaaagaaaaacggtgaGGCATGAGTCTATCGCGGAGCCACCGTTCAAGTC-TATGTTAATGAACGATGCAATAATAATAATCAT---------AATGCA----GAAGACAGATGCTTACACAGATGTACGCGTcctaaaaagagaaagaagaacagAATAAGAGTCAAACGGAT--AAAGGGGCGTGGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    249735 212 -  1189296 CATTATATTATAAGCGA-Gccaatgaaaacaaa---------agaagaaggtttGAACAGT--CCCTGGAGA-----GAAAAACGGT-----CTGACTC--CCTCAGAGC-------CAAGTC-TATGTTAATGAACGAtgc---aataataataataataatctAAATGCA----GAAGACAGATGCTTACACAGATGTAT---TC------GGgtggagaaaaagtgaataagaGTCAAACGGAT---GAGAGGCGGAGTC
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3960536 211 +  4147112 AATTATATTATGA-CGA-GTCAAGGAAAACAAA---------GG--------TTAAACAGT--CCCCTGGGAGAAAGGAAAAACGGTTGAGCCTGACTCCTCCTCGGAGCCACCGTTCAAGTC-TATGTTAATGAACGATGC---AATAATAATCAT---------AATGCA----GAAGACAGATGCTTACACAGATGTAC---CC------AAACGAAGAAC---TGAATGGGAGTCAAACGGAT--AAAGGGGCGTGGTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18213    71686 188 -   720316 AATTATATTATAA-CTATGGCATGCaaaacaaa---------ag--aacgtctaaaacggt--ccctgaaga-aaaagaaaaacgacgCAGTCCACGCC-------------CCGGTCAAGTC-TATGTTAATGAACGATGC---AATAATAATCAT---------AATGCA----GAAAACAGATGCTTACACAGATGTAC------------------------------GAGAGTCAAACGACCCGAGCGGGGCGGGGTT
i caeJap4.Scaffold18213 I 12 C 0

a score=3901.000000
s ce10.chrX              5698437 29 + 17718866 GGACAGTGCGA----GATGATGAA-----GGCGAGGTG--
s caeRem4.Crem_Contig0   2408106 31 -  4500979 AAACAGTGCGA----GATGATGAACACTTGGCCTG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    249950 29 -  1189296 GAACAGTGCGA----GATGATGAA-----GGCCTGATG--
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3960748 20 +  4147112 GTATGGTGTGA----GATGATGAA----------------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18213    71874 35 -   720316 AGACTGTGCAACGGCGACGGTGGC-----GGATAGAGAGG
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              11026242  8 + 21540570 I

a score=15943.000000
s ce10.chrX              5698466 36 + 17718866 GTGCATATGGTCCTTA--------CA-------CGTATT---TGTTGACACTAG
s cb4.chrX              11026250 44 + 21540570 ATACATATGGACCATCTTCTCTCGCA-------CGTGTT---TGTTGACATTAG
i cb4.chrX              I 8 I 19
s caeRem4.Crem_Contig0   2408137 31 -  4500979 GTGCATATGGTCCA----------CA-------CGTATT---TGTTGACAC---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    249979 41 -  1189296 GTACATACGGTCCT----------CAACATCTCCGTATT---TGTTTGCATTAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3960768 33 +  4147112 -TGCATATGGTCCG----------TA-------CGTACT---TGTTTGCATTAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    71909 37 -   720316 ATGCATATGGTCCG----------CA------TCATGTTCTCTGTTGACACTA-
i caeJap4.Scaffold18213 C 0 C 0

a score=-9573.000000
s ce10.chrX              5698502 26 + 17718866 TAGAATAAGAAG-GATCGG-------AACGATGC--
s caeRem4.Crem_Contig0   2408168 19 -  4500979 ---------------TCGGACAAGAAAACTCGCG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250020  9 -  1189296 -------------TATCGG------------TCT--
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3960801 14 +  4147112 -------------TGTCAA-------AACTCTCC--
i caePb3.Scfld02_0      C 0 I 5
s caeJap4.Scaffold18213    71946 22 -   720316 -------AGAGGCGCACGG-------ATCTAACAAA
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              11026294 19 + 21540570 I

a score=26141.000000
s ce10.chrX              5698528 204 + 17718866 GAACTGTTGTGTGA---AGAACAAGA-GGATTAGAGAA--------GACATCATGTCAGAT-GAAGAGATGGT--ACGAG-TCCAGCTGACAAAGCAACC---GATAGAGTA--CATTTTGCGATGGGCCA-----CGCCATT-TCTTGGAACTTGATACCCGTTTT---ATGA--GGG----TTGG-GGTGGGGACAT---GTGGCGATGACCATAAA----AAG----------------------AACGGCG-------CGCGGTAAAT-CGGAT
s cb4.chrX              11026313 234 + 21540570 GAACTGTTGTATAAGAGAGAACAAGA-GGATTAGA--------------GTCTTGTCGGGGCGAGAAGATGGTCCACCGATTCTATCTGCAGCTGCTGGA---GATAGACTC--------AAGAAAGGC-------CGACGTTGTCTTGGAACTTGATATTCTGTTT---ATGGA-GGGGCGTCGGACTGATGGGACATGTGGTGGCGTCAGTCGTAAAACAGAGGGCGGAGACCCGAGAACTTCTATGTCGGAA--TCCGACGCGGTAAAT-----G
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   2408187 227 -  4500979 GAACTGTTGTGTGA---AGAACAAGAGGGATTAGAGAT--------GATGTCTTGTTG----GATAGAATGGT--ACGGGGTCCAGATGACAAAGCGGGA---GATATACTCTTCTTCTTGAGAAAGGCGCTTGGACGGGGCT-TCTGGGAACTTGATACCCTGTTT---GTGAAGGGGGTGTCTGG-TGATGGGACAT---GTGGCCACAACCATAAA----AAGGCGG-----------CTTCCACATAG-------CTGTGCGGCAAAT-CAGAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250034 206 -  1189296 GAACTGTTGTGTGA---AGAACAAGG-GGATTAGAGTGAGACGAGCGATGTCTCGGTGG---GTGAGAATGGT--ACGAGCTCCAGCTGACAAA---------GATAGACTC----------------CGCCTCA-CAG-----GCGAGGAACTTGATACCCTGTTT---ATGG--GGGGCGTCTGC-AATT-GGACAT---GTGGCGTCGCTCATAAA----AGGCCGA-----------ACTCATTGTCGGCT-------TGCGGTAAAATCCGAT
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3960820 208 +  4147112 GAATTGTTGTGTGA---AGAACAAGA-GGATTAGACAGAAACAA--GATGTT----CGG---GTAAGGATGGT--CCGAG-TCCAGCTGACAAAGCAGCCCC-GACGGACTC----------AATCGGCGTCTT--CTG-----TCCAGCAACTTGATATCCTGTTTTGGGTAA--GGGATGTCTGG-TGTT-----------CGGCGTCAGCTATTAA----AA------------------TGAATGTCGGCGGGCCTTATGCGGTAAAAGAGGAT
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213    71968 172 -   720316 AAACTGTTGTGTGA---AGAACAAGA-GGATTAAATAA--------GCTGTC--------------GGGTGGT--ACGGA--CCAGCTGACAAAGCGGAGATGGATGGACTC------------------------CGAC----TCTTGGAATTTGATACTCT-TTT---AT----GGGATGGAAAA-GCACCAGACAT---GTGG------TCGTAAA----AAGGCGG------------------CTCCGCA-------CGCGGCAAAT-CAGAT
i caeJap4.Scaffold18213 C 0 I 256

a score=1648.000000
s ce10.chrX              5698732 41 + 17718866 TGACC--CACTGATGAGCTCCCGCCTAAT-----AAAACTATGATGAT
s cb4.chrX              11026547 40 + 21540570 TGATC--GGTTGATGGACTTAGGAGCCAT-----AAATCATTGATGG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2408414 34 -  4500979 TGACC--TTTCGATGTATTCAGTAATAA------AAGT-----ATGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250240 47 -  1189296 TGACC-TTTTTGATGAGCTTCACGCCTACTCATAAAAACTATGAGGAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3961028 47 +  4147112 TGACCTTTTTTGATGAGCTTCACACCTACTCAT-AAAACTATGATGAT
i caePb3.Scfld02_0      C 0 I 182
e caeJap4.Scaffold18213    72140 256 -   720316 I

a score=-61196.000000
s ce10.chrX              5698773 565 + 17718866  
s cb4.chrX              11026587 248 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2408448 265 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250287 264 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3961075 182 +  4147112 I
e caeJap4.Scaffold18213    72140 256 -   720316 I

a score=26749.000000
s ce10.chrX              5699338 189 + 17718866 CCACTTAAAGATGAGTATCA---AAAAAAG---TTCGATGTTGCCAT------------ATTTGAGCAATATTATTTTTTATGAAC----ATGACCTCGCTTGGA---CAAAT---ACGGATTTGTGAATCACAA--TTCGCGTTTAAGTTTTGTCTAA--CAAGGACAGACATTGCTGTTGC--------GTTGAACATGTGTTCGAATGTTGTCCGGGG---GGCACCT----------C
s cb4.chrX              11026835 159 + 21540570 ---------TATAAAAACCA---agtaaaa---ccaa-------------------aaaaaccgaGTA-CGACCTTGTAGGAAAACAAACACAATCGTTCTCAAATCGCAACA--------------------AC--TTTGTAT-CCAAAGTTTCACAA---AAGGACA-----TGTTGTCGT----GG----ACAACATGTGTTCGAATTTTATAAGTGGTGGACCAACC---------GC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2408713 193 -  4500979 CCACTTGAACATGAAGATCG---AATAAAG---TTCAATGTTGCAA--------CGAAAAGTGGAGCATTAATCATTTACAAAAACTGA-ACGACCTTGCATGAA---CAAAC--------------------AC--TCCGTTCACCAAAGTTTTGTGAATGAAGGGCA-----TGCTGTTGC----TGTTTTGCGACATGTGTTCGAATGTTATGAGTGGCAAGGAACCCTCACAACAGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250551 213 -  1189296 CTACTTGAACATAagtgtca---aaaaaagt--tttaatgTTGCAATTA----TTGAAAAGTAGAGCAAtaatcattcagaaaaacgat-ATGGCCTTGTGTGaa---caaat---agaaattgaagaatagCAACTCTTGTTTTCCAAGTTTTCTCAA--GAAGGGCA-----TGCTGTTGCTGTGTGTTGTTTAACATGTGTTTGAATGTTATGAGTGGCACGGCACCG------AACGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3961257 219 +  4147112 CTACTTGAACATGAGTATcatgtaaaaaaattgtttaatgtTGCGATCCTACTTTTGAAAGTAGAGCAATAATCACTCACAAAAACGAT-ATGACCTTGTGAAAA---CAAATATGAAGAATCGAAGAATCGCAA--tttattttccaagtttcccTCA--CAAGGGCA-----TGCTGTTGC----TGTTGTTCGACATGTGTTCGAGTATTATGAGTGGCGAGGCACCC------TGTGC
i caePb3.Scfld02_0      I 182 C 0
e caeJap4.Scaffold18213    72140 256 -   720316 I

a score=290474.000000
s ce10.chrX              5699527 721 + 17718866  
s cb4.chrX              11026994 700 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2408906 737 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    250764 732 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3961476 696 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    72396 687 -   720316  
i caeJap4.Scaffold18213 I 256 I 107

a score=5151.000000
s ce10.chrX              5700248  8 + 17718866 --GTCAATAT
s cb4.chrX              11027694 10 + 21540570 GGGTCAATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2409643  8 -  4500979 --GTCAATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    251496  8 -  1189296 --GACAATAT
i caeSp111.Scaffold626  C 0 I 228
s caePb3.Scfld02_0       3962172  8 +  4147112 --GTCAATAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    73083 107 -   720316 I

a score=-5006.000000
s ce10.chrX              5700256 37 + 17718866 -GGACTTTTTCTTTATATTATTTTTTGGTT------------TGACACCA
s cb4.chrX              11027704 36 + 21540570 GATAC--------------TTTACCTAGTTATAGAAATATGATGGTCCTG
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2409651 31 -  4500979 Agaacagtttt------cttttcactgGT-------------TGACACTA
i caeRem4.Crem_Contig0  C 0 I 181
s caePb3.Scfld02_0       3962180 25 +  4147112 AGAACAATA----------TCTTATTAGTT------------TGGCG---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeSp111.Scaffold626    251504 228 -  1189296 I

a score=-2630.000000
s ce10.chrX              5700293 52 + 17718866 AATAAAGTAGTC---TTATTGAGAAAAAAAAT---TGAGGGAAAACTAAACTAAAAGT------
s cb4.chrX              11027755 64 + 21540570 aaaaacgcGTTTGTTTTATTAACAAATGAAACCTCCGTTCAGTGAGttatcgtaaacactctaa
i cb4.chrX              I 15 C 0
s caePb3.Scfld02_0       3962205 33 +  4147112 ---------------TTatt-acaaa--aaac-------caaagactgaacaaaaaat------
i caePb3.Scfld02_0      C 0 I 175
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeSp111.Scaffold626    251504 228 -  1189296 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=-2417.000000
s ce10.chrX              5700345 307 + 17718866 CTAGATTTTCACAGGAAACATGAAAT---------GACATGACTGGAGTTTTGAAAAATGGCGAACATGGCCTTGTTGTTTTGAAATCGAATTTAGTTCAATTATTATTTTTTACAAGGAAAGTGTTTTAGCTCACAATTCGACTTTCAAACTGAGTCTGTGTCATTTGAAAGAGAACTTAGGTCACTACAAAAAAGTCAACCACAGATTCAAAAAAAATTGATGGACGGTCcattgcggatctgggagtcagttacactgcctggtggtgatcccactgggctataatttaagccacttcctaacaggggacagt
s cb4.chrX              11027819 186 + 21540570 -tagattTCC-CctgaaccgtcaactttgagctcaaatatatctgttcctgtgaaagatattgacAA----------GTTTCCAACTGACAAATCgttc-atcataa-----tataaaaatattgtatcagtttatcatt----tttgatact------------tttcacag-gaaccgag---------------------atatattgaCTAAAAATTGACAG--------------------------------------------------------------------------CTTTACAGGGAACATT
i cb4.chrX              C 0 I 141
e caePb3.Scfld02_0       3962238 175 +  4147112 I
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeSp111.Scaffold626    251504 228 -  1189296 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=0.000000
s ce10.chrX              5700652 204 + 17718866 agcagataacgcagtagtggattgctccacatcccaatggagcctgggaactcgggggtgaggccggacttgaactcgtgacctctagattcactaccgacctagctatcCCGCTTCCCGGAACACTTTAATCTAGAAGATAAGAAACGGAAACCATGTTTTAAGGAAGTTTTAAAATTGTTTTGTAACATGTTTATTTGGAGT
e caePb3.Scfld02_0       3962238 175 +  4147112 I
e caeJap4.Scaffold18213    73083 107 -   720316 I
e cb4.chrX              11028005 141 + 21540570 I
e caeSp111.Scaffold626    251504 228 -  1189296 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=-981.000000
s ce10.chrX              5700856 118 + 17718866 TTTTAAAGTTTAAAGTGCTCCACTGCAGCTAATAGGAAGtttttttttaataatttaattaCGAAGTCTAATTGTGAGCTGAACTACTTTCCTTATTAAATCAGTTAATAAAAATAAT
s cb4.chrX              11028146  81 + 21540570 CtctacttttcaaaattatctacTCTGGCTGTCAA------------TCAAAATCTGAGTGCTAG---TGATTTTATGGGAAAAAACTTTTCCCAC----------------------
i cb4.chrX              I 141 C 0
e caePb3.Scfld02_0       3962238 175 +  4147112 I
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeSp111.Scaffold626    251504 228 -  1189296 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=172.000000
s ce10.chrX              5700974 12 + 17718866 GAAAATTCAGGG
s cb4.chrX              11028227  9 + 21540570 -AAAATgtag--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    251732 12 -  1189296 GATATTTCAGGA
i caeSp111.Scaffold626  I 228 C 0
e caePb3.Scfld02_0       3962238 175 +  4147112 I
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=-2027.000000
s ce10.chrX              5700986 33 + 17718866 AAAAATGTGACATTTAAAGGGACGAAAACGGAT
s cb4.chrX              11028236  9 + 21540570 --------gtaattttt----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    251744 29 -  1189296 ----AACTGACACTATTATAAAGGGAAAAAGAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3962413 29 +  4147112 agaaaaatgacacTTTGATAA----AAAAGGAT
i caePb3.Scfld02_0      I 175 C 0
e caeJap4.Scaffold18213    73083 107 -   720316 I
e caeRem4.Crem_Contig0   2409682 181 -  4500979 I

a score=7325.000000
s ce10.chrX              5701019 17 + 17718866 AGACGGTATTCCGAGAT
s cb4.chrX              11028245 11 + 21540570 ------ttttccgagac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2409863 17 -  4500979 AGAAAGGATTCCGAGAT
i caeRem4.Crem_Contig0  I 181 C 0
s caeSp111.Scaffold626    251773 17 -  1189296 GGACGGTATTTCGAGAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3962442 17 +  4147112 GAAAGGTATTCCGAGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    73083 107 -   720316 I

a score=345221.000000
s ce10.chrX              5701036 631 + 17718866  
s cb4.chrX              11028256 689 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2409880 693 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    251790 669 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3962459 657 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    73190 654 -   720316  
i caeJap4.Scaffold18213 I 107 I 413

a score=28271.000000
s ce10.chrX              5701667 116 + 17718866 TTTGAAAT-AAGAATCCAAGAAAGAAAGGGC--AAAGTATATTAGAA---------CGGGAGGTGTA-GGGAAAA----GGTGTGCGTGCCAAGGCCATGCCA-------GCGATTTGTCAGCCTGATTTGGTGTGAAAA
s cb4.chrX              11028945 111 + 21540570 tttgaaatcttgaaacc----AAGAAAGGGC--ACACAGTATAGACACGCACGTATAAGGAGGTGCG-AAGAGAA-GTCAAAATGCGTG--AAGGTCATGCCAGAGATT-GCATTCT------TTGAT------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2410573 109 -  4500979 TT-------TCGAATCC----AAGAAAGGGC--ATAGTCTATCGGGA------------GAGGTGTA-AAAGAAA-GT-GGAATGCGTG--AAGGTCATGCCATCATCA-GCGATCTGTTAGGTTGATTTggtgtgagaa
i caeRem4.Crem_Contig0  C 0 I 227
s caeSp111.Scaffold626    252459 118 -  1189296 tttgaaat-cagaatcc----AAGAAAGGGC--ACAGTATATTAAGT-----------AAAGGTGTAGAAAAGAATGT-AGAATGCGTG--AAGGTCACACCATTGCCA-GCGATTTGTTAGGTTGATTTGGTGTAAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3963116 113 +  4147112 tTTCA-------AATCC----AAGAAAGGGCATATAGTAAATTAGGA-----------AAAGGTGTA-AAAAGAATGT-CGAATGCGTG--AAGGTCATGCCATCACTATGCGATTTG-TAGATTGATTTGGTGTGAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    73844 413 -   720316 I

a score=-5697.000000
s ce10.chrX              5701783 140 + 17718866 TACGTTGATGGAAGACTTACAAAACGGGCA-------AAACACAGCT-AGTATGAA--ATCCTGCTAACGG----------ATTG-CTAACCTT---GACAG---AAAAAAGTAAAACGGACTTTTTGTA-AAAGTGAAGA-AGGACGACGCTAA---TGGGTTCCTTTTAA
s cb4.chrX              11029056 112 + 21540570 -------------------TTGATGGAGtagc-----aaaaaaagttgttcgtGAA-------GACAGAAA---------GAGAGAATAACTTTCTGGCAAATGGAG----------------TTTTTTC---GGTGAAGACAGTTTAGCAAAGAAATCGGATAGCcttga-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    252577 143 -  1189296 ----GTAGTGGAAGATAAATGGAAGACATTTC-----TTATGAAGTT-TT-GTGGATCACTCAGCTAAAGA----------AGTGACTAACCtt---gaaaatgcagaaaaaaataacggATTCTTTTTGCAAAGTGACG--AGGACGACACTGA---TGAGTAGTTTTAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3963229 152 +  4147112 ----ATG--AGTAGACGAAGGAAAGAAGTTTCTAGGGTTAAAAAGTT-TTCTTGGATCTATCCGCTAGAAATTAGCTGAAGATAGGCTAACCTT---GACAGTGTAAAAAAGTATTGCggactttttttt---agtga----agGACGACACTGA---TGAGTAGTTTTCGA
i caePb3.Scfld02_0      C 0 I 323
e caeJap4.Scaffold18213    73844 413 -   720316 I
e caeRem4.Crem_Contig0   2410682 227 -  4500979 I

a score=467.000000
s ce10.chrX              5701923 5 + 17718866 AATTA
s cb4.chrX              11029168 5 + 21540570 aattg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    252720 5 -  1189296 CACTA
i caeSp111.Scaffold626  C 0 I 290
e caePb3.Scfld02_0       3963381 323 +  4147112 I
e caeJap4.Scaffold18213    73844 413 -   720316 I
e caeRem4.Crem_Contig0   2410682 227 -  4500979 I

a score=-5164.000000
s ce10.chrX              5701928 740 + 17718866  
s cb4.chrX              11029173 562 + 21540570  
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3963381 323 +  4147112 I
e caeJap4.Scaffold18213    73844 413 -   720316 I
e caeSp111.Scaffold626    252725 290 -  1189296 I
e caeRem4.Crem_Contig0   2410682 227 -  4500979 I

a score=89.000000
s ce10.chrX              5702668 5 + 17718866 CGCAA
s cb4.chrX              11029735 5 + 21540570 CGTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2410909 5 -  4500979 CGTGG
i caeRem4.Crem_Contig0  I 227 C 0
e caePb3.Scfld02_0       3963381 323 +  4147112 I
e caeJap4.Scaffold18213    73844 413 -   720316 I
e caeSp111.Scaffold626    252725 290 -  1189296 I

a score=3649.000000
s ce10.chrX              5702673 23 + 17718866 AACATCTACATACTGTGCGATGC
s cb4.chrX              11029740 23 + 21540570 GACATCGACTTACTAAACGATGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2410914 17 -  4500979 AATATCTACT------GCGATGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3963704 17 +  4147112 AAAATCTACT------GCGATTT
i caePb3.Scfld02_0      I 323 C 0
e caeJap4.Scaffold18213    73844 413 -   720316 I
e caeSp111.Scaffold626    252725 290 -  1189296 I

a score=3386.000000
s ce10.chrX              5702696 4 + 17718866 GAGC
s cb4.chrX              11029763 4 + 21540570 GAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2410931 4 -  4500979 GAGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3963721 4 +  4147112 GAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    74257 4 -   720316 GAGC
i caeJap4.Scaffold18213 I 413 C 0
e caeSp111.Scaffold626    252725 290 -  1189296 I

a score=156299.000000
s ce10.chrX              5702700 369 + 17718866 GCCTGATAATCCAGAATGACTCAAGGACC--AGAA-------ACAAACCAG-----------AATGTACAAACTGTTGTGACCTA-TAAATTGACA-ATTGTCGGACTATTTAGTCACTTAGTGACTCATCAAGG-------CTGTCCTTGG-ATAGGAGGCGCGAATCGACACCTTCTACCGGGGGTGTGGCAT--GGAGGATATGCCGAAGAATGATTG---CATTTT--GTGGGTT------GGTTTTGATGTTTTAGAGAACGATGAAGATTTTGATTTGTAATT-AAATGT----------------------------------------------------GTGAGAA---CGAAATGA----AAACGAGTCTTCTTGG------------ATT---------CTCTTTCATT---TGCTTCGGCTTTG---GTTTTGAAAGTAAGACAACCAGGAGGACGGTGGCG-AGAGAAGTCAAAAAGCCAGAATAAC--------
s cb4.chrX              11029767 353 + 21540570 GCCTGATAATCCAGAATGACTCAAGGACA--AGAACAAGTGAGAAAACCAG-----------A------AAGCTGTGGTGACCTA-TAAATTGGCATTTTGTCGGACTATTTAGTCACTTAGTGACTCATCATCAA--CGCCTTGTCCTTGGAAAAGGAGGC------------------------GCACGGGAA--GAGTCAAAAGC--AAGAATGATTGGTAGGATTTT-GTGGGATCGCAAGGATCGcaa---caaaaagaaatggaaaggATCTGATTTGTAATT-AAACGT----------------------------------------------------GTGAGAAAACCGAAATGA----CAACGTCGcttcttcct----------catt------ttccaCTTTCATT---AGTTCTGGATTTG---GTTTTGAAAGTAAGATTTTG----AAGGGGAGAGGCAG--------AAAAGCCAGAA--AC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2410935 351 -  4500979 GCCTGATAATCCAGAATGAGTCAAGAACA--AGGA-----GAGAAAACCAG-----------AATGTACAAGCTGTGGTGACCTA-CAAATTGAC--TTTGTCGGACTATTTAGTCACTTAGTGACTCATCAACA-------TTGTCCTTGG--GAGGAGGCGCGAA--GACAGCC---GCCGACGGCGTGGGAT--AAGTCAAAAGC--AAGAATGATTG---CGTTTTG-GTAGGTTT-----GATTccga---tgaaaatga---tgaagattttgaattgtAATT-AAATGT----------------------------------------------------Gtgagaa---caaaatga----aaacgagtcttcctcct----------ttttttttcatttctatttcatT---TGTTTCGGCTTTG---GTTTTGAAAGTAAGACT----------AGGAGAGG-AG--------AAAAGCCAGAATGAC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253015 331 -  1189296 GTCCGATAGGCGAGAATGAGTCAAAAACAGTGGAA-------ATAAACCAG-----------ATTTAACAAGCTTTGGTGACCTA-TAAACTGAC--TTTGTCGGACTATTTAGTCACTTAGTGACTCATCAAGA-------TTGTCCTTGG--TAGAAGGCGCAAA--GACACCC--TGCTGACGGCATGGGAT--------AAAGC--AAAGCTGATTG---CATTTTT-GTG---------------------tgggaagaaggagaaggattTTGATTTGTAATT-AAATGT----------------------------------------------------GTggaat---cgaaatga----aaacgagtctcgttgt-------------tt---------ctctttcatt---tgcTTCGGCTTTG---GTTTTGAAAGTAAAACTTTT--GGAAACAGAAAGG-CG---------AAAGCCAGAATGAT--------
i caeSp111.Scaffold626  I 290 C 0
s caePb3.Scfld02_0       3963725 352 +  4147112 GCCTGATAATCCAGAATGACTCAAGGACA--AGAA-------ATAAACCAG-----------AATGTACAAGCTGTGGTGACCTA-TAAATTGAC--TTTGTCGGACTATTTAGTCACTTAGTGACTCATCAACA-------TTGTCCTTGG--TAGGAGGCGCGAA--GACACCC------GACGGCGTGGGATAAAAGTCAAAAGC--AAGAATGATTG---CATTTTTCGTGGGTTT-----CATTTTGG--CTGGGAAGAA--AGGATAAATTTGATTTGTAATT-AAATGT----------------------------------------------------GTGAAAA---CGAAATGG----AAACGagtcttttttcg----------aatt---------ctcttTCATT---TGCTTTGGCTTTG---GTTTTGAAAGTAAGACTTTGTAGAAAACTGGGGGG-AG--------AAAAGCCAGAATGAT--------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    74261 409 -   720316 GCCTGATAATCCAGATTGACTCAAGGACA--AAAA-------AGAAACCAGCCGCCTGTCAAGATGTACAAGCTTCGGTGACCTATTAAACTGAC--TTTGTCGGAATACTTAGTCACTTAGTGACTCATCAACACATTGCTTCGTCCTTGG-----GAGGCGCTAG------------------------AGAA--AGAATAAATG---AAGAATGATTG---TGCGTCG-GTG---TT-----Ggttttga------------------agattttgattCGTAATTAAAATGTTTGGACTTTTCTCCTCATCTTTTCTCGATAAGAGTAAAAGAAATTGAATGAAatggaaa---cgaaacgaaacgaaacaagTCTTGCTTTTGCTACGCGAAGATTCGTAAATTCCTGTCGGATTTGCTGCTTCTGCTGTGGAAGTATTGAAAGTAAGA------------CGGAAAGC-AA--------GAAAGTCCGAAAGGGAACGGAAC
i caeJap4.Scaffold18213 C 0 I 29

a score=11925.000000
s ce10.chrX              5703069 43 + 17718866 CAGC-GGTATTGGGGGTTATT---GACGGGCGTCGAACGGGCGGCGT
s cb4.chrX              11030120 39 + 21540570 CGAT-CAT-TTTG----TATTGACGGC-GGCGTCGAACGGACGGGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2411286 39 -  4500979 CAGC-GGTATTGG----TATTCGAGAC-GGCGTCAAACGGACGGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253346 39 -  1189296 CAACGGGTATTGG----TATT---GAC-GGCGTCAAACGGGCGGGTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964077 37 +  4147112 CAGC-GGTATTGG----TATT---GAC-GGCGTCAAACGGGAGGGC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74670 29 -   720316 I

a score=166886.000000
s ce10.chrX              5703112 257 + 17718866 AAAAG---------CGACAAAACATTACTGGCTATTT-------GAACTAA--------------GCATATCGATCAGTGTGTGTTGGA--------------AGGCCGAAAAGAATTAAAACGAGCGGAAAATTTGGC-GAAAATTGTTCTTTATG--------TGTATA-----TTCG--TTCA--CCTTTTTCCTTCAATTTTCTCCTCTCCGCGCACTAT-CCTCATCCGTCATTTCACTCTTCG--TTGCCGTCAGA----TGCCTTTTCAATGCCTGTTGATTTTCAAAAGAAACTG-TTCTAAAATAGATG----------------------TGAAGTGGA
s cb4.chrX              11030159 278 + 21540570 GAGAAGAGCGGCTATGACAAAACAC-------TGTTT-------GAACTGGA------------CACATATCGATCAGTGAG---------------------GGGCCGAAAAGGATTAAAACGAGCGGAAAA-TTGGC-GAAAATGGTTCTTTATG--------TATATTCTTCGTTCG--TTCGTCGCTTTTTCCTCTA------GTTTTTCCGCGCACTATCCCTCATCCGTCATTTCACTCTTCGATTTGCCGT--GA----TGCCTTTTCAATGcctgttgattttcaaaagaaactgTTTCCAAAATGGCTGGATGTGAAGTGGATGATGGAATTGAGATGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2411325 240 -  4500979 --------------CGACAAAACACTA---AATGTTT-------GAACTGG--------------ACATATCGATCAGTGTGTT--GGA--------------GGGCCGAAAAGGATTAAAGCGAGCGGAAAA-TTGGC-GAAAATGGTTCTTTATG--------TATA-------TTCG--TTcgcctttttttcttcca------tcttCTCCGCGCACTAT-CCTCATCCGTCATTTCACTCTTCG--TTGCCGTTCGA----TGCCTTTTCAATGCCtgttgattttcaaaagaaactg-TTCGAAAATGGCTG----------------------TGAAgtgga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253385 248 -  1189296 AAGAAGGAGGGAGAAGACAAAACAC-------TGTTT-------GAACTGG--------------ACATATCGATCAGTGTACT-AGGA--------------GGGCCGAAAAGGATCAAAACGAGCGGAAAA-TTGGCAGAAAATGGTTCTTTATG--------TATA-------ttcg--ttc---ttttcttcttcca------tcttctCCGCGCACTAT-CCTCATCCGTCATTTCACTCTTCG--TTGCCGTCCGA----CGTCTTTTCAATGcctgttgatttt-gaaagaaactg-TCCGAAAATGGCTG----------------------TGAAgtgga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964114 234 +  4147112 ---------------GACAAAACAC-------TGTTT-------GAACTGG--------------ACATATCGATCAGTGTACT--GGA--------------GGGCCGAAAAGGATTAAAACGAGCGGAAAA-TTGGCAGAAAATGGTTCTTTATG--------TATA-------TTCG--ttcg--tctttttcttcca------tcttctcCGCGCACTAT-CCTCATCCGTCATTTCACTCTTCG--TTGCCGTCCGA----TGCCTTTTCAATGcctgttgattttcaaaagaaactg-TTCGAAAATGGCTG----------------------TGAagtgga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    74699 262 -   720316 -----------------aaaaacaa-------ttctttAGAAAAGAACTGAATATATAAACATCCACATATCAATCAGTGTGTTCGGGACGAGACGGAGATTGGAATAAAAAAGAATTAAAGCAAGCGGAAAA-TTGGCTTTGATCGGTTCtttttttggggcgctata-------ttcgcattcg--tcattttatttta------------------------tttcatt--tcatttcactctTCG--CTGCCAGCCAATGCCTGCCTTTTCAATACCTGTTGGTTTCC-AAAGAAACTG-TTTGAAAGGAAAT-----------------------TGAATGGGA
i caeJap4.Scaffold18213 I 29 I 236

a score=19971.000000
s ce10.chrX              5703369 48 + 17718866 ATATTGAAA-------AAGACGGGCTATTTGATGCGGGACATTGGTCACTAAAAG
s cb4.chrX              11030437 54 + 21540570 AT-TGGAAAAGCAGATGAGAATGCCTTTTTGATACGGGACATTGGTCATGAAAGG
i cb4.chrX              C 0 I 82
s caeRem4.Crem_Contig0   2411565 47 -  4500979 at-tgaaaa-------gaaaatggctATTCGATTCGGGACATTGGTCATTTAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253633 42 -  1189296 at-t------------gagaaaagcTATTCGATTCGGGACATTGCTTGCTAAAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964348 42 +  4147112 aa-t------------gagaaaagctATTTGATTCGGGACATTGGTCACTAAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I

a score=-6421.000000
s ce10.chrX              5703417 112 + 17718866 CTGTTAGCTTTCAACACTATTGAATACGGTTTTTGTGAAGTGAGCCGTTGAGGCGATGGCCAAAATGTGCATCTTAACTTGCTGCTATTTTGAATTAACTCTCAACGTTATA
s caeRem4.Crem_Contig0   2411612  40 -  4500979 ------------------ATT--------------TGAA-TACATGG------------------------------CTCgtaatgatttttgaa---------acgttata
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253675  40 -  1189296 ------------------ATT--------------GGAA-AACGCCG------------------------------TTTTTTAACATTTTGAAT------ACgacatt---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964390  38 +  4147112 ------------------ATT--------------TGAATAGAACCg------------------------------ctcaaaacaatttttgat---------acatt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I
e cb4.chrX              11030491  82 + 21540570 I

a score=-19388.000000
s ce10.chrX              5703529 66 + 17718866 TGGGTTTTCACTA---TTTTTTAATTTTTTTAACTGAACAGTGGCCCACATCAAATAGAAACAATGTTT--------------------------------------------
s cb4.chrX              11030573 85 + 21540570 Ccagttttcattaattttttcttatttttt----------------------------gagcaaCGTTTCGGGTacaacaaacaaaatgaaagaaaataagacaacaattttt
i cb4.chrX              I 82 I 36
s caeRem4.Crem_Contig0   2411652  4 -  4500979 --------------------------------------------------------------------ttgg-----------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253715 18 -  1189296 ----------------tttttcc------------------------------------ggaattgAATC-------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964428 26 +  4147112 ----------------ttttcccatttacc----------------------------aaaaaaaacatc-------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I

a score=-5081.000000
s ce10.chrX              5703595 33 + 17718866 CAATATGCTCTACTTAATCAGCTTATGATGAAT
s caeRem4.Crem_Contig0   2411656 22 -  4500979 -aaaattctccattttcacagtt----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253733  9 -  1189296 ---------CAATTatga---------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964454  4 +  4147112 ---------caat--------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I
e cb4.chrX              11030658 36 + 21540570 I

a score=-46451.000000
s ce10.chrX              5703628 186 + 17718866 ATAGAATGGAGCTTCAAAAAAAAATTCAGAAATTTGAGGAACCAAGGTGGTGAAAC------------------------------------------------TTTTAAGTCAAAGCTTAAAGTTAGGCAAATTCTCAAATTTAT--GAAATCAGAGTTGTTTTTAAAAATTGCGAGTACTGTCTTATTTTCAACGATTTTCATATTTTAAATATGAATTCT---TAAAAATAT-TTAA
s cb4.chrX              11030694 204 + 21540570 aaacaatttattcccaaaaaaa---ttagaaatatt-----tcaggaatttcaaaaatgttttcaaaaatgttacagTTTTTTAGACATGAACAGTataattatttgaaaacaCAGAATTTCTACCGAGAAAA-----CAATGAGCAACAATTTTGA----TGATTCAGAGTTTCGAGT-----TTCACTT----------CACtacttgaaaaattatttttgctgaatattaaa----
i cb4.chrX              I 36 I 30
s caeRem4.Crem_Contig0   2411678  85 -  4500979 ---------------------------agaaa----------------------------------------------------------------------------------------------gaaaaga-----aaataag---caaGTTAGA----CGATACAAAGTAAGAAGT--------ACTTTTAG------CAccataagaaaaat--gtttcgtttaaaaata------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253742  64 -  1189296 --------------------------------------------------------------------------------------------------------tcgaaaaaaaatgatttctgggaaacaga-----aaacgTGC--TAAACAGAA----TATTTTAAG--------------------------------------------------------TAGAAATGA-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964458  84 +  4147112 --------------------------------------------------------------------------------------------------------tCGGAAAACGTTAGTTACAATCACACAGA-----AAAATT----CATACGATA----TGTTTCCAGG----------------AATTTT--------CGGGTCTAgaaaact----------taaaatcaa-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I

a score=-1383.000000
s ce10.chrX              5703814 22 + 17718866 AGAAACGAAAAAAAGGTCAAAC
s caeRem4.Crem_Contig0   2411763 13 -  4500979 --------gaaataggaaaaa-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253806 15 -  1189296 ACCAACCagaactat-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964542 22 +  4147112 aaagaaaggaaatacgaaaaac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I
e cb4.chrX              11030898 30 + 21540570 I

a score=-8743.000000
s ce10.chrX              5703836 50 + 17718866 ACTTTAAGTTGTGTTAAACAATTTAATAGAATTTAAAAAAAAAACAGTAA
s cb4.chrX              11030928 48 + 21540570 attttaagtttttgctaaaaattagacaaaatt--aaaataaagcaataa
i cb4.chrX              I 30 I 55
s caeRem4.Crem_Contig0   2411776 14 -  4500979 ------------------------------------aatgagaacacTAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253821 37 -  1189296 ----------ttttctcacaatGTTCCACAATT--AACCGAAAAGAATT-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964564 38 +  4147112 ---------attttcccagAAAGTTCTCCGGTC--GACAACAACTAAAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I

a score=-4215.000000
s ce10.chrX              5703886 55 + 17718866 TCGAAACGCCTGTGAAGAAAACTATTCTCGTCATTATTCTC---AGCGATTCTATCTA---------------
s caeRem4.Crem_Contig0   2411790 44 -  4500979 -------------GAAT----------------TTCCCGTCGCGGACAGTATTACTTTTGGGAATTACTCCTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253858 22 -  1189296 ---------------------------------CTTTTCTC---GACAAATCTATGTT---------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964602 22 +  4147112 ---------------------------------TTCCTCTC---GACGATTCTGTGTT---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I
e cb4.chrX              11030976 55 + 21540570 I

a score=21716.000000
s ce10.chrX              5703941 37 + 17718866 ATCTCAGCCATCAATAATTCGTGGATGAGAAGAC--ACT
s cb4.chrX              11031031 39 + 21540570 ATCTCGAACATCAATAATTTCTGGATGAAaaggtttttt
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   2411834 39 -  4500979 ATCTCGGCCATCGATAATTTATGGATGAGAAGATTGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253880 37 -  1189296 ATCTCGATCATCAATAATTTGTGGATGAGAGGAT--TCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3964624 37 +  4147112 ATCTCAGTCATCAATATTTTGTGGATGAGAAGAC--ATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    74961 236 -   720316 I

a score=142521.000000
s ce10.chrX              5703978 411 + 17718866 C-CGAAATAAACTTT-TATAGAACTCAATTAATTCGATTAACTGATGAGCGATGATGAGACTTTTGAAT-----TCGGGAGAAGGCGGTGAAAAGAAGTGGAAAAAACATACGCGAGGC---------AAATAATGGGACTGCAAAAAAAACTTCAATGAAAACTTGTGACGTTGTCGCTT----GTCGGTAACGATGC-----AGAAAGGGACAGA----------AAGGAAGATTGAAGAACCCGACTGGAGAT-AAAATCAAAGCTGCAAGCTGGCCTCTTTCACTGGAAAAACGACGTTTCATCTAAGAA--GGCGA-----ATAGAGACTTGACAGT-----GAGATACGGAGGAGGGCCGG--ACAAGCAACAAAGAGAAA-------TGCGGGAC---------AGTGTCTTGATTTTCAGGAAAAC--AAC---------AAAAAAACGCACATAATCATCTTCGCCCAGTTTCTTACAA
s cb4.chrX              11031070 412 + 21540570 cgaaaataaaacttcATATGAAAGTCAATTAATTCGATTAACTGATCGG-------GCGACTT-----T-----TCGGgaacaaaatcggaaaaaatg------------------aaCGTCCAATGAGAATAATGGGAC------AAAAACTTCATTG-AAACGTGTGACGTTGTCGCTAGTTTGTCGGTAACGAtgg-----aaaaggcaaaaaaagaaaggaaggag-aaga--gaagaacCCGACC-AAGAT-AAAATCAAAGCTGCAAGCTGGCCTCTTTCACTggaaaaacgacgattcattgaaaaacggaggg-----aaaaagacgggagaaaattggaaaaagtgg----tgacggggcaaaaggaaaggggagaaaTcaggaatcaagaaaaatggaattcatTTTCGTATTGTCCGGAAAAT--ACA---------ATAATGGT----CAGATCATCTTCACCTAGTTTGCCAAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2411873 374 -  4500979 C-CAAATTAAACTTCATATAAAATTCGATTAATTCGATTAACTGATCG----------GACTT-----TGAGAGTCgggaacaac-----aaaaaaag------------------agc---------gaATAACGGGAC------GAAAACTTCATTGAAAACGTGTGACGTTGTCGCTA----GTCGGTAACgatgg-----aaaaggagaaaga----------gag-aagattgAAGAACCCGACC-AAGATAAAAATCAAAGCTGCAAGCTGGCCTCTTTCACTGGAAAAACGACGATTCAtcgaaaaa-ggaagg-----aaaatgACGGGGTAAA-----TAGATACGG----GGACCGGAGACAAGTCTCAGGAAGGAAT------TCAAGAAA---------TATTTCTTTATTATCTAGAAAATTGACA---------ACAATAGTTTTGTTGACCATCTTCACCTAATTTAAAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    253917 361 -  1189296 C-CGAATTAAACTTT-TATGAAACTCAATTAATTCGATTAACTGATCT----------GATTTTAGACT-----TCGAGAAACGA----GCGAAAAAG------------------AGC---------GAATGATGGGAC------AAAAACTTTATTGAAAACGTGTGACGTTGTCTCTT----GTCGGTAACGAtgg----gaaaaggagaaaga----------gag-aagatggAAGAACCCGATC-AAGAT-AAAATCAAAGCTGCAAGCTGGCCTCTTTCACTGGAAAAACGAcgattcatcgaaaaa-aggaGG-----GGAACGACTTGGAGAA-----TAGATACGG----GGGCCGG--Acaggaagaaagaaaaa--------tgtgaggA---------GCGGTTAATA----CTGGAAAAC--AAAGATCAACTCAAAATTCT------CTTCGAC--CATTTTATTCCAA----
i caeSp111.Scaffold626  C 0 I 143
s caePb3.Scfld02_0       3964661 361 +  4147112 C-CGAATTAAACTCT-TATGAAACTCAATTAATTCAATTAACTGGACG----------GACTT-----T-----TCGGGAGAAAACACTgcaaaaaaac-----------------agt---------gaataatgggac------aaaaacttcattgaaaacgTGTGACGTTGTCGCTT----GTCGGTAacgatgg----aaaaaagagaaaaa----------gagaaagattgAAGAACCCGACC-AAGAT-AAAATCAAAGCTGCAAGCTGGCCTCTTTCACTGGAAAAACGACGATTCatcgaaaaa-gaatggaagaagaagtgactTGGAGAA-----AAGATAT-G----GGGCCGG--ACAAGCGACAGGATGAA--------TAAGGAGA---------TGGGTCTATATTGTCTGGAAAAT--A-----------ACAATTGT------GTTCATCTTCactgaatttgaa----
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18213    75197 284 -   720316 C-CGAAATAAACCCA--ATGAAACTTTTATAATTCGATTAACGAGCCA----------GA--------A-----GAAGGAATATAAATAGCAAGaatg------------------aaa---------ccaaaaaaaaag------gaaaacttcAAAGAAAACGTATGACGCTGTTGTTT---CATCGGTAACgatggaaaaaagaaagaggaaaa----------gaG-AAGGGTGAAGAACCCGACC-AAGAT-AAAATCAAAGCTGCAAGCTGGCCTCTTTCACTGG--AATCGACGATTCATCGAAATG-----AA-----GAAGTGACGAGCG--------TAGAT--------AGGCCGG--ACAAGCc-----------------------------------cgctttttta---------aaa-------------------------------------------------------
i caeJap4.Scaffold18213 I 236 C 0

a score=-2793.000000
s ce10.chrX              5704389 57 + 17718866 ATCTTCACTGACTCAAGTGGCTTCATA--TTGTATA--TGTCGTTTTCAATACTGTCTCGG--
s cb4.chrX              11031482 43 + 21540570 ATCCA------CTCAAGTGGCATTTC---TTTTA-A--TGTCATGT------ATTTTTTAG--
i cb4.chrX              C 0 I 129
s caeRem4.Crem_Contig0   2412247 50 -  4500979 ATCAGAATAGTCTCAAgtgattttct---ttttata--tgtCGTTT------ATGCCTTTG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965025 50 +  4147112 atcaGAACAAACTTGAGTGGTCATCT---TAATATA--TGCTGTCT------ATGCTTTTT--
i caePb3.Scfld02_0      I 3 I 3
s caeJap4.Scaffold18213    75481 47 -   720316 ----------ttttattttgtcttttattttttacagtcGCAGTCA------ACGGTTCTTGA
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=-1059.000000
s ce10.chrX              5704446  8 + 17718866 --GTAGCGTA
s caeRem4.Crem_Contig0   2412297  7 -  4500979 ---TATATGG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965078  8 +  4147112 --GTAGTTAA
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold18213    75528 10 -   720316 GAACAGCGga
i caeJap4.Scaffold18213 C 0 I 40
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=-2665.000000
s ce10.chrX              5704454 37 + 17718866 CGGTTGTGTGACAGTAAGCAATTTTT-------GCCGATTGCCG
s caeRem4.Crem_Contig0   2412304 16 -  4500979 CACTTGA------------AGAATTT----------------GG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965086 39 +  4147112 CACTCGA-----AATTTGCAAGATTTCATATCCGAGAATCaagg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    75538 40 -   720316 I
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=-10602.000000
s ce10.chrX              5704491 96 + 17718866 AGAAATCGCAAAAAGTT-------------TGACAGTAGCCGTTT------GAAAGAAAATGTGAAAAATTGACA----CTCTACTTTAATT---AATGACTATACTCGAAGTAAGTATTTT--
s caeRem4.Crem_Contig0   2412320 55 -  4500979 ATTAATCTCGGAAATTC---------cgaatgaaaatgattattg------gaaggaaa--------------------------------------------------aaataaatagt----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965125 74 +  4147112 aaaaatcggaaaaattcatGGGAATGCCCATAAAAGGAACTGTTGCTTCTCaaaggaaa----------------------------------------------tcagaaaaaaaaatt----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    75578 98 -   720316 aacaataagaaaaagga----------aaataaaagc--------------ggagaaaaatGGTGAAGACAGTCATCTTCTTCACCTAATTTGTAAGAGATCATCACTGACTCAAGTACC--TT
i caeJap4.Scaffold18213 I 40 I 248
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=-5793.000000
s ce10.chrX              5704587 133 + 17718866 TCGTTGTTTAAACGATATCAAGTTGAGTTTTCTATATAAAATTGGTTACTTTTCAAAGTTTTGGAGCATTTAAAGTAAAAACAAAAGAAAATTAGACTTGCAGCTTCtaaattttttaaaatttaaattattC-----------
s caeRem4.Crem_Contig0   2412375  69 -  4500979 --aaTGTGAAAACGCA---------GCTATCCTACTCAA----------------------------------AGTATTAAAAAACCGaggtt-------------------tttttcgaattcaaacAAGTC-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965199  84 +  4147112 --attgc---aacgtaa-------gatttttctgatcaaact------------------------------GAGTTATAAAAtattattatca------------------tttttcaaaacgagatAAATGTCCTCACGCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    75676 248 -   720316 I
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=-1026.000000
s ce10.chrX              5704720 141 + 17718866 AGGAAAATTATAACGATGGTGGGAGTTGACCTAGTCAGTCGTTGGGAATGTAATTTTATAAAACATTTTTCGTTATATTTGGTCATTTCTATTTACATGGGTTTTTCTTTACAAAAAATTGCATTCCAAAG----TTTTAAATTT
s caePb3.Scfld02_0       3965283  90 +  4147112 GTGCGAATAATAGCAAT------------CCTA--------------------TTATTtaatgcatttttg-------------aaatcaactgaCAT----------TCGAAAAGAGTCAACATCCAATGacgattttgaaatt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    75676 248 -   720316 I
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I
e caeRem4.Crem_Contig0   2412444   0 -  4500979 C

a score=369.000000
s ce10.chrX              5704861 4 + 17718866 TTGA
s caePb3.Scfld02_0       3965373 4 +  4147112 ccaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    75924 4 -   720316 TTGA
i caeJap4.Scaffold18213 I 248 C 0
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I
e caeRem4.Crem_Contig0   2412444 0 -  4500979 C

a score=-5877.000000
s ce10.chrX              5704865 100 + 17718866 TATTCGAAT------TCGAAAAGCTACAGTCAAACAAAAAATCAAAAAGAGATATCCAGTTCTCA-GAACACCAACTGTA-----TGAATGATAGATTT-GTCCATCACCCCT
s caeRem4.Crem_Contig0   2412444  71 -  4500979 TATCCGGATTG----TCAAGTAGATAGAAT------------------------GCTATGTGCaatgaa----aacggtc-----aaaacgATAGATTT-GTCCATCGT----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965377  63 +  4147112 ---caGTATAA---TTTAAAAAGataa------------------------------atgtgtca-aaa----aacagtt-----aaaaCGACACATTTCATTCATCGT----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    75928  69 -   720316 ------GATGAAAGATTGGTGAGATacgga---------------------------aaaaacga-aaa----aacgaataaagaaaaatgacaGATTC--CTCATCGT----
i caeJap4.Scaffold18213 C 0 C 0
e cb4.chrX              11031525 129 + 21540570 I
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=1910.000000
s ce10.chrX              5704965 2 + 17718866 TC
s cb4.chrX              11031654 2 + 21540570 TC
i cb4.chrX              I 129 C 0
s caeRem4.Crem_Contig0   2412515 2 -  4500979 TC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3965440 2 +  4147112 TC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    75997 2 -   720316 TC
i caeJap4.Scaffold18213 C 0 C 0
e caeSp111.Scaffold626    254278 143 -  1189296 I

a score=144306.000000
s ce10.chrX              5704967 449 + 17718866  
s cb4.chrX              11031656 506 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2412517 519 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 203
s caeSp111.Scaffold626    254421 414 -  1189296  
i caeSp111.Scaffold626  I 143 I 4
s caePb3.Scfld02_0       3965442 453 +  4147112  
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18213    75999 541 -   720316  
i caeJap4.Scaffold18213 C 0 I 2

a score=-24813.000000
s ce10.chrX              5705416  59 + 17718866 GATACACTGTT--GTTGTAGAAGGCTATAT-----------------GTAACTG----------------------------------------------------TACATAAATTTAATAATGT-----------GTAGT
s cb4.chrX              11032163  35 + 21540570 -----------------GATAAAGTTGAA------------------ATGATT------------------------------------------------------------ATATTGAAATAG-----------GAAAT
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold626    254839  26 -  1189296 -----------------GAGAAtcct---------------------------------------------------------------------------------------ttttctgaaggg-----------ataat
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3965899  47 +  4147112 -----------------AACAACCATACA--------------------GAtt---------------------------------------------------------cagttttctgaataaaactttattatataat
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold18213    76542 130 -   720316 GATGTAACATTTAATGGcagaaacgtttttttctgttttaccGGGAACCGATTGGAAACCTAGGCCATATAAACTTCTGCCAACCTTGGCCAAggcggcgtctcgccacgtgagtttaaaggcgc-----------acaac
i caeJap4.Scaffold18213 I 2 I 58
e caeRem4.Crem_Contig0   2413036 203 -  4500979 I

a score=-4237.000000
s ce10.chrX              5705475 30 + 17718866 TTGTAGTTTGAGC-------------TGATTATCGATGTATTT
s cb4.chrX              11032198 38 + 21540570 TGAGAGCTCAATATTCAGGGAGTGTGtgattatc-----attt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    254865 21 -  1189296 tgaaattgaa-----------------aaaaatt-----atcc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3965946 25 +  4147112 ttaaaataaaatc-------------gaaatgTC-----AGTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    76672 58 -   720316 I
e caeRem4.Crem_Contig0   2413036 203 -  4500979 I

a score=-2839.000000
s ce10.chrX              5705505 2 + 17718866 CG-
s cb4.chrX              11032236 2 + 21540570 tt-
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold626    254886 2 -  1189296 gG-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3965971 2 +  4147112 Gc-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18213    76730 2 -   720316 -CA
i caeJap4.Scaffold18213 I 58 C 0
e caeRem4.Crem_Contig0   2413036 203 -  4500979 I

a score=-41694.000000
s ce10.chrX              5705507  80 + 17718866 TTACTGTGAAAATGA-------------------------------------------------------ACAAGAGTACT------GAAATTCATACTCTTGAAAATGAAAAAAAATC--------------------GTAAAAT-----------TCTGTTTTCAACTTT--
s cb4.chrX              11032240  47 + 21540570 ---tttctgcagaaa---------------------------------------------------------------------------------------------aaaaaacactt--------------------ctgTAAT---------agaaattattcaatttt--
i cb4.chrX              I 2 I 11
s caeRem4.Crem_Contig0   2413239 136 -  4500979 ---ttactAAAATAAGTATGTGAACAAGTGTAATAGAGATTGAGATTAAATTGAAAGAGATTCATTTTTAACAAGAGAACC------GA-------GTTCATTAAATcgagaaacattt--------------------caataataaCTAATGGagaaactatatttttgt--
i caeRem4.Crem_Contig0  I 203 I 63
s caeSp111.Scaffold626    254888  38 -  1189296 CTACTAACAAAATAG------------------------------------------------------------------------------------------------------------------------------GGCAT--------Gatttattattcaaattt--
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       3965973  35 +  4147112 cagtttcgaaaat---------------------------------------------------------------------------------------------------------------------------------gaat--------gaaaatttatataaAGTT--
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18213    76732 117 -   720316 CCACTGCAATAAGAA------------------------------------------------------AACAGGCAAACTTGATAAGAAATGAATCTTTCTGGAAGTGAGTTGGACTTCCCGCCGCCGCCAGCTAGGACTATAAT---Tcgcgtactttttttggaaatctct
i caeJap4.Scaffold18213 C 0 C 0

a score=-11390.000000
s ce10.chrX              5705587 35 + 17718866 -TACTTCTTGATC---------TTTTGGC-CTTTTCTCACAGAATG--
s cb4.chrX              11032298 45 + 21540570 -TATTTATTAACCTTAccatattttcgaaattcatttCATTGAAAC--
i cb4.chrX              I 11 I 13
s caeSp111.Scaffold626    254933  7 -  1189296 ----------------------cTTCGAT-------------------
i caeSp111.Scaffold626  I 7 C 0
s caePb3.Scfld02_0       3966015  6 +  4147112 -----------------------TTTGGC-------------------
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18213    76849 31 -   720316 tttttttttaacttttatgCGTATTTAAC-----------------AT
i caeJap4.Scaffold18213 C 0 C 0
e caeRem4.Crem_Contig0   2413375 63 -  4500979 I

a score=281373.000000
s ce10.chrX              5705622 742 + 17718866  
s cb4.chrX              11032356 688 + 21540570  
i cb4.chrX              I 13 C 0
s caeRem4.Crem_Contig0   2413438 802 -  4500979  
i caeRem4.Crem_Contig0  I 63 C 0
s caeSp111.Scaffold626    254940 597 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3966021 575 +  4147112  
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold18213    76880 810 -   720316  
i caeJap4.Scaffold18213 C 0 C 0

a score=1228.000000
s ce10.chrX              5706364 5 + 17718866 GGCAA
s cb4.chrX              11033044 3 + 21540570 --taa
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2414240 3 -  4500979 --TGA
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold626    255537 3 -  1189296 --TGA
i caeSp111.Scaffold626  C 0 I 9
s caeJap4.Scaffold18213    77690 5 -   720316 GATAA
i caeJap4.Scaffold18213 C 0 C 0
e caePb3.Scfld02_0       3966596 15 +  4147112 I

a score=123156.000000
s ce10.chrX              5706369 130 + 17718866 --AAACAAACCGATAGAGAATCCGAGGAGAGCGTGAGGGATGATAAGTCCGGCGACGGACGTTGCAGAAGGAATCGACAGAAGACTGAAACCAATGACGACAAGACCAATGAAAGAGGAGAGCCATCTGGAA
s cb4.chrX              11033054 127 + 21540570 -----TATACCGATGGAGAATCCGAGAAGGCCGTGAGGGATAATGAGGCCCGCAACAGAGGTGGCGGATGGAATTGAAAGAAGACTGAAACCAATTACAACAAGTCCGATGAAGGAGGATAGCCATCTGAAA
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2414252 130 -  4500979 --CGACAAACCGATAGAAAATCCGAGAAGGCCGTGAGGGATAATGAGACCAGCAACTGATGTGGCAGACGGGATAGAGAGAAGACTGAAACCGATAACAACGAGACCGATGAACGAGGAGAGCCATCTGAAA
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold626    255549 130 -  1189296 --TTACACACCAATAGAGAATCCAAGAAGGCCATGAGGGATAATAAGTCCAGCAACAGAAGTAGCAGAAGGGATAGAGAGAAGACTGAATCCAATGACAACTAGGCCAATGAACGAGGAAAGCCATCTGGAA
i caeSp111.Scaffold626  I 9 C 0
s caePb3.Scfld02_0       3966611 130 +  4147112 --ATACACACCGATAGAGAAACCAAGAAGACCGTGAGGAATAATGAGTCCGGCAACAGAAGTGGCAGAGGGGATAGAGAGAAGACTGAAACCAATGACGACAAGTCCAATAAACGATGACAgccatctgaaa
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold18213    77695 132 -   720316 GATGACCCACCAATACTGAATCCGAGAAGACCGTGAGGGATAATGAGGCCGGTGACCGAAGTTGCTGAGGGGATTGAAAGAAGACTGAAACCGATAATAACGAGGCCAATGAATGATGACAGCCATCTGAAA
i caeJap4.Scaffold18213 C 0 I 61

a score=-3355.000000
s ce10.chrX              5706499 10 + 17718866 GAGATAATTT-----
s caeRem4.Crem_Contig0   2414382 10 -  4500979 TAATTACTTT-----
i caeRem4.Crem_Contig0  C 0 I 28
s caeSp111.Scaffold626    255679  2 -  1189296 ----------AC---
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3966741  5 +  4147112 ----------acttt
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold18213    77827 61 -   720316 I
e cb4.chrX              11033181  0 + 21540570 C

a score=0.000000
s ce10.chrX              5706509 4 + 17718866 AAAT
e caePb3.Scfld02_0       3966746 4 +  4147112 I
e caeJap4.Scaffold18213    77827 61 -   720316 I
e cb4.chrX              11033181 0 + 21540570 C
e caeSp111.Scaffold626    255681 4 -  1189296 I
e caeRem4.Crem_Contig0   2414392 28 -  4500979 I

a score=1349.000000
s ce10.chrX              5706513 8 + 17718866 TTTGGTAG
s cb4.chrX              11033181 8 + 21540570 TCTGGtat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    255685 8 -  1189296 CTTGGTAG
i caeSp111.Scaffold626  I 4 I 24
e caePb3.Scfld02_0       3966746 4 +  4147112 I
e caeJap4.Scaffold18213    77827 61 -   720316 I
e caeRem4.Crem_Contig0   2414392 28 -  4500979 I

a score=584.000000
s ce10.chrX              5706521 28 + 17718866 GGAG--AAAATATATGTTTCCTAGATTTTC
s cb4.chrX              11033189 30 + 21540570 aaagtttaaaaatattttctctaTATGTTC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3966746  4 +  4147112 I
e caeJap4.Scaffold18213    77827 61 -   720316 I
e caeSp111.Scaffold626    255693 24 -  1189296 I
e caeRem4.Crem_Contig0   2414392 28 -  4500979 I

a score=0.000000
s ce10.chrX              5706549 607 + 17718866  
e caePb3.Scfld02_0       3966746   4 +  4147112 I
e caeJap4.Scaffold18213    77827  61 -   720316 I
e cb4.chrX              11033219   0 + 21540570 C
e caeSp111.Scaffold626    255693  24 -  1189296 I
e caeRem4.Crem_Contig0   2414392  28 -  4500979 I

a score=837.000000
s ce10.chrX              5707156 28 + 17718866 TTTTAAATTCAGACATTA-GTATAAAACA
s caePb3.Scfld02_0       3966750 29 +  4147112 ttttagatgCTGGAATCAAGTATAAGCCA
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold18213    77827 61 -   720316 I
e cb4.chrX              11033219  0 + 21540570 C
e caeSp111.Scaffold626    255693 24 -  1189296 I
e caeRem4.Crem_Contig0   2414392 28 -  4500979 I

a score=-1780.000000
s ce10.chrX              5707184 1 + 17718866 --A
s caeRem4.Crem_Contig0   2414420 1 -  4500979 -A-
i caeRem4.Crem_Contig0  I 28 C 0
s caePb3.Scfld02_0       3966779 1 +  4147112 C--
i caePb3.Scfld02_0      C 0 I 5
e caeJap4.Scaffold18213    77827 61 -   720316 I
e cb4.chrX              11033219 0 + 21540570 C
e caeSp111.Scaffold626    255693 24 -  1189296 I

a score=409112.000000
s ce10.chrX              5707185 641 + 17718866  
s cb4.chrX              11033219 666 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2414421 635 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    255717 564 -  1189296  
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       3966785 605 +  4147112  
i caePb3.Scfld02_0      I 5 C 0
s caeJap4.Scaffold18213    77888 619 -   720316  
i caeJap4.Scaffold18213 I 61 I 1938

a score=-20679.000000
s ce10.chrX              5707826 153 + 17718866 AATGAAATACAACTC--GTTTTGGTTTCAGTTGGTTGT----------------------------ACTACTTTACACAGC---------GAGAACCCTTCCCAGTATGCT-----------------------------------------------------------TGCATTTACTTGTGAGTAG--AAAAGGAG--------------------GGAGGCTA------------------------GTATGGA-GCGG----CCGCGTGTGGCGAGTATAACTACACTCGTCGCCTT
s cb4.chrX              11033885 232 + 21540570 tttt-----gtcttt--tttttaatttaacaCATATCCATACACTATCTTCATTCTCTTCTTGAGAACTTTTCCCCAACTTATATATCTAAAAAGTTGTGTTGTGTCAGT------------------------------------------------------------TGTATGTGC-TGTGGAGGG--AGAAGAAGGCAAAAAGGAAATAGCGAGAGGCGGCCGGGGTCAACACTCAACCAGTAacacgcagagaagcgagacccCGCGTGTGGCTAGTATGAATACACACACCGTCTC
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2415056 166 -  4500979 tttt-----cttttcaacttctcATTTCGGATGTATGC-------------------------------TTTCCACAAGTC---------AAAAGTTTTGTTGTCTACG-------------------------------------------------------------CGTACGTGtgtgtgagaga--gagagagcgccAGACGACAATGGTCAGCGGCGACTA------------------------GTAGGAAAGAGA----CAGCATGAAGCGAGTATAACAACTATTCCCGACCC
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626    256281 193 -  1189296 cttt-----tttctt--tttctttcttcgccctt-tgc--------------------------------ttctct---tc---------aaaaa---------------gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAGTGTTcat--------gaaagaaagagagaccaCAATGGTCGGCGTCTACTA------------------------GTAAGAG-GAGG----CAGCATGGAGGCAGTATAAG-ACACGCGCCT----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3967390 151 +  4147112 CTCG-----TTCTTC--TTTCTCCC-----------GC--------------------------------TTCTCTATGTC---------AAAAATTGTGGTgtctatgtg-----------------------------------------------------------tgtgtgtgtacgTGAGCGCAAGAAAGGAGGCGAGGCGGCAAGGGTCAGCGGCGACTA------------------------GTAAGAGCGAGA----CAGCATGGAGGCAGTATAAC-ATTCGTGCTT----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18213    78507 1938 -   720316 I

a score=1399.000000
s ce10.chrX              5707979 5 + 17718866 GCCCC
s cb4.chrX              11034122 5 + 21540570 GCTCG
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold626    256474 5 -  1189296 ACCCC
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       3967541 5 +  4147112 ACCCC
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold18213    78507 1938 -   720316 I
e caeRem4.Crem_Contig0   2415222 12 -  4500979 I

a score=-655.000000
s ce10.chrX              5707984 7 + 17718866 TTTTTAG
s cb4.chrX              11034127 1 + 21540570 ------T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    256484 7 -  1189296 GTCTCGC
i caeSp111.Scaffold626  I 5 C 0
e caePb3.Scfld02_0       3967546 12 +  4147112 I
e caeJap4.Scaffold18213    78507 1938 -   720316 I
e caeRem4.Crem_Contig0   2415222 12 -  4500979 I

a score=51334.000000
s ce10.chrX              5707991 94 + 17718866 TGATCAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGAATCT-TTTTTG
s cb4.chrX              11034128 95 + 21540570 TGATCAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGAatccttttttg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    256491 94 -  1189296 TGATCAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCgaattc-tttttg
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18213    80445 94 -   720316 TGATcaggtggccgagtggttaaggCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGAATCT-CTTTTG
i caeJap4.Scaffold18213 I 1938 N 0
e caePb3.Scfld02_0       3967546 12 +  4147112 I
e caeRem4.Crem_Contig0   2415222 12 -  4500979 I

a score=183.000000
s ce10.chrX             5708085 18 + 17718866 TTCCTTTTGTTTTATTAG---
s cb4.chrX             11034223 18 + 21540570 ctttttttattcGTTCAG---
i cb4.chrX             C 0 C 0
s caeSp111.Scaffold626   256585 21 -  1189296 cttttttgccTTTCACAGTAG
i caeSp111.Scaffold626 C 0 C 0
e caePb3.Scfld02_0      3967546 12 +  4147112 I
e caeRem4.Crem_Contig0  2415222 12 -  4500979 I

a score=281.000000
s ce10.chrX             5708103 15 + 17718866 AAGGTGCATTTTTGA
s caeSp111.Scaffold626   256606 13 -  1189296 AACATG--TTTCTGA
i caeSp111.Scaffold626 C 0 C 0
e caePb3.Scfld02_0      3967546 12 +  4147112 I
e cb4.chrX             11034241  0 + 21540570 C
e caeRem4.Crem_Contig0  2415222 12 -  4500979 I

a score=0.000000
s ce10.chrX             5708118 1220 + 17718866  
e caePb3.Scfld02_0      3967546   12 +  4147112 I
e cb4.chrX             11034241    0 + 21540570 C
e caeSp111.Scaffold626   256619    0 -  1189296 C
e caeRem4.Crem_Contig0  2415222   12 -  4500979 I

a score=50684.000000
s ce10.chrX              5709338 94 + 17718866 TGATCAGGTGGCCGAGTGGTTAAGGCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGAATCTTTTTTG
s caeRem4.Crem_Contig0   2415234 94 -  4500979 TGATcaggtggccgagtggttaaggcgATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGaatcttttttg
i caeRem4.Crem_Contig0  I 12 C 0
s caePb3.Scfld02_0       3967558 94 +  4147112 TGATCAGGtggccgagtggttaaggCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCtgatcgaaattttttga
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17990   203817 94 -   357190 TGATcaggtggccgagtggttaaggCGATGGACTGCTAATCCATTGGGGTTTCCCCGCGTGAGTTCGAATCTCATCCTGATCGAATAGTTTTTG
i caeJap4.Scaffold17990 N 0 I 4817
e cb4.chrX              11034241  0 + 21540570 C
e caeSp111.Scaffold626    256619  0 -  1189296 C

a score=-6226.000000
s ce10.chrX              5709432  37 + 17718866 TTTCTT------------------TTTTTTGC-----TAGAAAA--------------------TTCTCTATT-----------------GAAATGG------------------
s caeRem4.Crem_Contig0   2415328  30 -  4500979 ctttct------------------taTTAAGA-----CAAGAAA--------------------ATCACTTTT------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3967652 115 +  4147112 ttttttcagagaatgttGGGAATGTACTACGAATGTTAAAGAAAAGTGTCTGACAGCATTtactatgatttttttgaagttacaagcacaaaaatagaattcaaagtcaaaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034241   0 + 21540570 C
e caeSp111.Scaffold626    256619   0 -  1189296 C

a score=91.000000
s ce10.chrX              5709469 1 + 17718866 T
s caePb3.Scfld02_0       3967767 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034241 0 + 21540570 C
e caeSp111.Scaffold626    256619 0 -  1189296 C
e caeRem4.Crem_Contig0   2415358 0 -  4500979 C

a score=-17768.000000
s ce10.chrX              5709470 41 + 17718866 TAGAAGT------------------------GTTTTAAAACTAAATTT---------TGGTG-------TTTGTTTTTTAA------
s cb4.chrX              11034241 47 + 21540570 TAGATGA------------------------GTTCTAAAGGCGA-ATT---------ACACATTTTGTACATGTTTTTTAA------
i cb4.chrX              C 0 I 110
s caeRem4.Crem_Contig0   2415358 35 -  4500979 -CCGGGG------------------------TTTTTAGCAACAATCTT---------CCACGTTTT---CAT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    256619 26 -  1189296 -------------------------------CCATGAGAGTCCAAATT---------------------AATGGGGTT---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3967768 80 +  4147112 ----tggaatattctaGATGAATTTTATTGACTTTGAGAAACAGAACTGCTGACataaaacatcaa---aatgtgttttattCCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-11246.000000
s ce10.chrX              5709511 47 + 17718866 ------------------------------------GTTAAATGTTATTTTCAGCATAT---ATACTAA----ATTATGTTCAAGAAGGA-----
s caeRem4.Crem_Contig0   2415393 39 -  4500979 -------------------------------------------GATAAGTGACA--------GGTCTAGTTgaactttttgtaaaaaaga-----
i caeRem4.Crem_Contig0  C 0 I 52
s caeSp111.Scaffold626    256645 27 -  1189296 -------------------------------------TTCATAGATAT--------------AGGctaa--gaa---------------aacgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3967848 93 +  4147112 ACacccatttttgaaagtgattgAATGACATGCGAAATTCATTAATATTCAAAACATGTCGAAACCCAG--GAACTACTTCTAAaagtgagcaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034288 110 + 21540570 I

a score=-3872.000000
s ce10.chrX              5709558 37 + 17718866 CACAATCTACATGGAAA------GGTGATATCTCTTCT--------------------------------------AGTTC
s caeSp111.Scaffold626    256672 28 -  1189296 aaaa---caagtgatga------------aaattttgc--------------------------------------atttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3967941 81 +  4147112 aaaaatgtaagttGAAACCTATTTTCGCTAAATTTTGCCAAGGGCCAGGTTGTTTTCCTTTTATCactgatttctgatttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034288 110 + 21540570 I
e caeRem4.Crem_Contig0   2415432 52 -  4500979 I

a score=-6665.000000
s ce10.chrX              5709595 21 + 17718866 TCAAAGATTTTTGAGGCTTCT------------------
s caeRem4.Crem_Contig0   2415484 21 -  4500979 ------------------TTAAcaattataaaaatctct
i caeRem4.Crem_Contig0  I 52 I 6
s caeSp111.Scaffold626    256700 11 -  1189296 tcggAG-----------------------AAACA-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968022 34 +  4147112 tacaATCTTGATCAGGCGTCCACcgtctcaaaat-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034288 110 + 21540570 I

a score=66382.000000
s ce10.chrX              5709616 202 + 17718866 TTTCATTAC--TATATTGA------TTCTA-CAGTAA-------------------------------------------------TTATACA-----ACCA--------ACCTGAAGTACTTGTGCATGCTGACCCCACGCCTTGTAGTGCTCTAGCCAACCATAGTGTGAAATAAGAATCTCCAAATGCAAAGAGGATGGTCGAGCAGAACATGATGACAAAACCTCCGAACATAGGCATAGTGTAGCCGATTC------TGAAC---ACGACTTTGTTT----------
s cb4.chrX              11034398 206 + 21540570 tttaat------------a------atctA--AATCT-------------------------------------------CGACCCTGCTTTG-----ACTT--------ACCTGATGTACTAGTGCACGCTGATCCAACACCCTGAAGAGCTCGAGCCAGCCAAAGTGTAAAATATGATTCCCCAAAAgcaaaaataattgttgagcAGAACATGATAACGAAACCTCCAAACATTGGAAGAGTATAAccaattctaaaatttaaaagcaAAATTATGTTT----------
i cb4.chrX              I 110 I 7
s caeRem4.Crem_Contig0   2415511 216 -  4500979 ATTCATCTGGCGCTAATAA------ATCTA-GAATGT-------------------------------------------GAACCCTATTTCTGTGCCACTC--------ACCTGAAGTACTGGTACATGCTGATCCGACACCTTGCAGAGCTCTTGCCAACCAAAGTGTGAAATAAGAATCACCAAAAGCAAAAAGAATAGTTGAACAGAACATAATGACAAATCCTCCAAACATTGGTAGTGTATAACCGATcc------ttaaaa--aaaactttaatg----------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    256711 205 -  1189296 -----------TTGAATGA------ATTCACTAGTGT--------------------------------------------ACGACTTATTAA-----ACTA--------ACCTGAAGTACTTGTGCATGCTGATCCAACACCTTGAAGAGCTCTAGCCAACCAAAGTGTAAAATAAGAATCACCAAATGCAAACAGAATAGTTGAGCAGAACATGATAACAAAACCTCCAAACATTGGTAATGTGTATCCAatcc------taga----aaaaatatgctcca---agttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968056 266 +  4147112 -----------ttcaattatccTTGGTTTCCCAGTGTTTCATAGTGTTAAGCATAACTGTGCTCCCAGTCTATTCCCTAAAACGTTCGCCTAA-----ACGAATGTTGATACCTGAAGTACTTGTGCATGCCGATCCGACTCCTTGTAACGCTCTTGCCAACCACAGCGTGAAATAGGAATCACCAAATGCAAACAAGATAGTTGAAGAAAACATGATAACAAATCCGCCAAACATTGGTAAGGTATAcccaattc------tgaa----aactcattgaTTCATTCTGCCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-3711.000000
s ce10.chrX              5709818 14 + 17718866 CCGATACTCCCATT----
s caeRem4.Crem_Contig0   2415727 17 -  4500979 -cCATTATTTTGGCAGCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    256916 12 -  1189296 ---atttttttctta---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968322 12 +  4147112 ---ACAAATTCCTGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11034604  7 + 21540570 I

a score=103100.000000
s ce10.chrX              5709832 202 + 17718866 AAATGCCCACCTATTTGTAAGAGGTCCAATCCATGGATTAACTAGAAGCTGAACCAGAGCTTTGGATCCAAACATGAGTCCAACGTGTACATTTTCACTGGCCAGGAGCTTATGCCTTTCTTCCTCACTTATTGTACGTACCGCAGGTTCTTCAGTTTCTACCGGAGGTTTCTTGGCAGCAGGAGACATATATTTTCTTCT----A
s cb4.chrX              11034611 206 + 21540570 AATTATGAACCTATTAGTCAGAGGACCGATCCATGGATTGACAAGAAGCTGAACCAAAGCCTTCGAACCAAACATAAATCCCACATGAACATTTTCACTGGCCAGTAGTTTGTGTCTCTCTTCTTCGTTAATTATTCGTTTCGGCGGTTCGTCTTTATTCATCGGAGGTTTCTGGGCAGCTGGGTTCATGTACTTTCGTCTGTAAG
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2415744 200 -  4500979 --GGAGGTACCTATTGGTAAGTGGACCAATCCACGGATTGACGAGTAGTTGAACAAGTGCTTTGGAACCAAACATGAGTCCGACATGAACATTTTCACTTGCCAATAGTCTATGTCTTTCTGCTTCATCGATAACTCTTTTTGGAGGTTCCTCATTCTTTATCGGTGGTTTCTTAGCCGCAGGTGACATATACTTTCTTCT----G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    256928 198 -  1189296 ----gcaTACCTGTTGGTAAGAGGTCCAATCCATGGATTCACTAAAAGTTGAACGAGAGCCTTTGATCCAAACATGAGACCAACATGAACATTCTCACTAGCCAATAGTTTATGACGCTCTTCTTCGTCTATGACACGTCTCGGAGGTTCTTCGTTTCTCAATGGCAGTTTTTTGGCAGCGGGCGTCATGAACTTTCTTCT----A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968334 198 +  4147112 ----AAATACCTATTCGTAAGTGGTCCGATCCACGGATTGACAAGCAGCTGGACAAGTGCTTTTGAACCGAACATTAGTCCCACATGAACATTCTCACTGGCCAACAGCTTGTGTCTCTCGGCCTCATCTATTACTCGCTTTGGGGGTTCATCGCTTTTCAAAGGTGGTTTTTGAGCAGCAGGGTTCATGTATTTTCTTCT----A
i caePb3.Scfld02_0      C 0 I 40
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-5916.000000
s ce10.chrX              5710034 49 + 17718866 ----TAACAAAAGATTGCAAAAACAATGTGCAAAGAAAAAAACGAGTTCATCA----------
s cb4.chrX              11034817 40 + 21540570 ----Aaacaaaagatttt------------taaagaa---aatcagtttttgtgaAATA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2415944 35 -  4500979 ----AAACAAAGGAATAC------------CATTGAA------------CCATGAAAAATTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    257126 38 -  1189296 CAGAGAAATAACTAATAA------------CAGAGAA---CTTTTGGTTATCT----------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3968532 40 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=93295.000000
s ce10.chrX              5710083 167 + 17718866 TACCGATCATTGTATTCGCGGTTTTTA---------CTATTATGATTTTTTCTGTCCGACTCCTTTCTCCT---CTCACTTCGTCCAACTGGGCCGATCGGGTTCTCGTCCCAATCAATATCAGCATTATTACCCAGTTTCAAAGGAACATCCCAGCTGTCATCATCTTCCCACTAAAA
s cb4.chrX              11034857 170 + 21540570 TACCGGTCATCGTATTCACGGTTCGtg---------cttttcaaattctttctGCGAGACTCCTTCCGATTGTCCTCACTGCGTCCAACTGGTCCAATCGGGTTCTCTTCCCAGTCTATTTTTGCATTGTTTCCAAGCTTAAGTGGGACATCCCAACTATCATCGTCTTCCCACTAGAA
i cb4.chrX              C 0 I 492
s caeRem4.Crem_Contig0   2415979 179 -  4500979 TACCGGTCATCGTATTCAcgattcttgtttttttgatttttctgatttttcctgcgtgattcttttttgttgtcttcatTACGACCAACTGGACCAATTGGGTTCTCCTCCcagtcaatttcagattgGCTACCAAGTTTCAATGGGACATCCCAACTGTCATCATCTTCCCACTGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    257164 169 -  1189296 TACCGGTCATCATAGTCTCGATTTTTA---------CTcttatagttttttctacGAGACTCTTTTCTGCGGTCATCGTTTCTACCAACAGGACCAATTGGGTTTTCTTCCCAATCTATTTCAGCATTATTACCAAGTTTCAACGGAACATCCCAACTATCATCGTCTTCCCACTAAA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968572 169 +  4147112 TACCTGTCATCGTATTCtttgttcttg---------ttcttgtGACTTTTTCTGCGAGACTCTTTTTTGCGCTCATCGTTCCGGCCAACTGGTCCAATCGGGTTCTCCTCCCAGTCGATATCAGCATTGTTCCCAAGTTTCAATGGGACATCCCAGCTATCATCATCCTCCCactaaa-
i caePb3.Scfld02_0      I 40 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-363.000000
s ce10.chrX              5710250 5 + 17718866 TAAGC
s caeRem4.Crem_Contig0   2416158 5 -  4500979 CCGAC
i caeRem4.Crem_Contig0  C 0 I 16
s caeSp111.Scaffold626    257333 5 -  1189296 TTATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968741 3 +  4147112 --aac
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11035027 492 + 21540570 I

a score=-1877.000000
s ce10.chrX              5710255 26 + 17718866 TACTTAATTTCAATTTCCCGTACACG
s caeSp111.Scaffold626    257338 22 -  1189296 CGTTTTAT--TATCTATTCTAATA--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968744 23 +  4147112 aattttagaaCAACATTCCTAAT---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11035027 492 + 21540570 I
e caeRem4.Crem_Contig0   2416163 16 -  4500979 I

a score=-4406.000000
s ce10.chrX              5710281 13 + 17718866 TCCAGTTGAGCAA-----
s caeRem4.Crem_Contig0   2416179 13 -  4500979 -----TCTAACAAAACAA
i caeRem4.Crem_Contig0  I 16 I 6
s caeSp111.Scaffold626    257360 13 -  1189296 -TTGAGTTATGAG--T--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968767 11 +  4147112 -----GTTAGGAGCAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11035027 492 + 21540570 I

a score=52070.000000
s ce10.chrX              5710294 109 + 17718866 ACCTGACGTTTCACACGCTTTTGAGAGTTGTGACTGAACAGAATGTCAGTTTCATTCGGATGTTCCATACGGAGTAGATATTCAGGAATAATTGGCACTGAGCAAATTA----------
s cb4.chrX              11035519 107 + 21540570 ACCTGTCTTTTAACACGCTTCTGGTTATCCTGACTGAATAAAATATCGGTTTCATTTGGATGTTCCATGCGGAGTAGGTATTCAGGGATAATAGGTACTGGA------ATTTA------
i cb4.chrX              I 492 I 30
s caeRem4.Crem_Contig0   2416198 103 -  4500979 ACCTGTCTTTTCACACGTTTCTGAGAGTCATGACTGAAGAGTATATCGGTTTCATTTGGATGCTCCATTCGAAGCAGATATTCAGGGATAATTGGTACTTAA------A----------
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    257373 101 -  1189296 ACCTGACGTTTCACACGATTTTGAGAGTCAtgattgaataaaatatctGTCTCATTTGGATGCTCCATACGAAGAAGATATTCGGGGATAATTGGTACTAA------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968778 100 +  4147112 ACCTGGCGCTTGACACGGTTTTGCGA---------GAACAGTATATCTGATTCATTCGGATGCTCCATACGAAGAAGATATTCGGGGATAATTGGCactaaa------a----acattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-4187.000000
s ce10.chrX              5710403 30 + 17718866 CATGTACAATTATTTTTTTCATGTTT--CCAG-------
s caeRem4.Crem_Contig0   2416301 25 -  4500979 --------------CATGAACAGTTCAATTTAGAACCAA
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    257474 26 -  1189296 ----ACAAAGGATTTTTTATGAGTTC--TTTA-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3968878 30 +  4147112 gaataaaaactaattattttcagttt--tcga-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11035626 30 + 21540570 I

a score=307201.000000
s ce10.chrX              5710433  913 + 17718866  
s cb4.chrX              11035656 1029 + 21540570  
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   2416334  956 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    257500  963 -  1189296  
i caeSp111.Scaffold626  C 0 I 399
s caePb3.Scfld02_0       3968908  969 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-587.000000
s ce10.chrX              5711346 5 + 17718866 ---AATAT
s cb4.chrX              11036685 5 + 21540570 AGGAA---
i cb4.chrX              C 0 I 657
s caeRem4.Crem_Contig0   2417290 5 -  4500979 AGAAA---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3969877 5 +  4147112 GGTAA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e caeSp111.Scaffold626    258463 399 -  1189296 I

a score=-878.000000
s ce10.chrX              5711351 104 + 17718866 CGTTGATTTTATGAACA------AAAGAATTGAAGATA-----TTCACAGA-AAAAAGA-------GAAAGAAAGAGTTTGAAATAAATATTGAA-ATTCGTTGATA-TTTTCATATTTTCTCAC
s caeRem4.Crem_Contig0   2417295 122 -  4500979 -TTTGATTCCGAAAACC--CATCATGGATTCAAAAGAGGGTGTCTCGCACATAAAAACAGCTGGTCGAAAAAGAGAGTATGATGAAAATCAAGAGCTCACCTTGATAATTTTTAACGTTTCTCAC
i caeRem4.Crem_Contig0  C 0 I 235
s caePb3.Scfld02_0       3969882  83 +  4147112 -CCTGATTCCACACAACAACATCACTGAAtcgaaatag--------------aaaaaca----------------------atataAGTTAAAAA-TTACTTTTAAA----TTATCAGTTCTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11036690 657 + 21540570 I
e caeSp111.Scaffold626    258463 399 -  1189296 I

a score=196.000000
s ce10.chrX              5711455 19 + 17718866 GTCAGGGAAAACATTGAAA
s caePb3.Scfld02_0       3969965 17 +  4147112 G--AATAGAAAGGTTGAAA
i caePb3.Scfld02_0      C 0 I 408
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11036690 657 + 21540570 I
e caeSp111.Scaffold626    258463 399 -  1189296 I
e caeRem4.Crem_Contig0   2417417 235 -  4500979 I

a score=0.000000
s ce10.chrX              5711474 854 + 17718866  
e caePb3.Scfld02_0       3969982 408 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11036690 657 + 21540570 I
e caeSp111.Scaffold626    258463 399 -  1189296 I
e caeRem4.Crem_Contig0   2417417 235 -  4500979 I

a score=151.000000
s ce10.chrX              5712328 3 + 17718866 TTT
s caePb3.Scfld02_0       3970390 3 +  4147112 TTC
i caePb3.Scfld02_0      I 408 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11036690 657 + 21540570 I
e caeSp111.Scaffold626    258463 399 -  1189296 I
e caeRem4.Crem_Contig0   2417417 235 -  4500979 I

a score=6578.000000
s ce10.chrX              5712331 39 + 17718866 TTTTTAACTTATGCAAATAAAATACAC--ATTTCTACCGAA
s caeRem4.Crem_Contig0   2417652 36 -  4500979 TTCtcaacttttcgaaatg----aCACG-ACTCATACCGAA
i caeRem4.Crem_Contig0  I 235 C 0
s caeSp111.Scaffold626    258862 38 -  1189296 TTGTCAACTTTTCTCAATA---TACACGAATTCATACCGGC
i caeSp111.Scaffold626  I 399 C 0
s caePb3.Scfld02_0       3970393 37 +  4147112 TTCTCAACTCTTTCCGAAA---CACACG-ATTCATACCGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11036690 657 + 21540570 I

a score=117079.000000
s ce10.chrX              5712370 220 + 17718866 -TCAAGGCTTATACGAAG-CTATAAAAAGTGCTTGAGACGAA-------TGTCTCCCTAGGTGAAATGAGAA--------GCAAAATCTCATTCGAATTCAATGATGCTCTCGAGAATAATG---CTC----GCATTTTTCACTTAACTGCAACGCGAC--------GACGTCGCCGCACAAGTCTCATCTGTCAAGTGCCAA-TGTGCGTGTGAA---TCGAT----------TCATAGAACTTTTCATGGTTTGAATTCTGCTC----
s cb4.chrX              11037347 254 + 21540570 -tcaaacctcATGAAAAGCTCAT--AAAGTGCTTGAGACGCTTTGTGT-TGTCTCCATAGGTGAAATGAGGAAAAAGCAGATGAAATCTCATTCGAATTCAATGATGCTCTCGAGTATAATG---CTTCATGCCGTTTTTCACTTAACCGCAACGCGATGACCCCCAGAAGACGACG---AAGTCTCATCTGTCAAGTGGCAGTTGTGCGTGTGAATCGTCAACTCTCAA--TATCATGGAACTTTTCATCGTTTGAATTCTGCTT----
i cb4.chrX              I 657 I 40
s caeRem4.Crem_Contig0   2417688 220 -  4500979 -TCAAGGCTCATAAAAAG-TCAT--AAAGTGCTTGAGAGGAATCGTCCATGTCTCCCTAggtgaaatgagaa----------gaaatctCATTCGAATTCAATGATGCTCTCGAGAATAATG---ctc----acatttttcactcaac-------------------GACGCCGTCG--AAAGTCTCATCTGTCAAGTGCCAA-TGTGCGTGTGAA---TCAACTCAAAACCCGTCGAGGAACTTTTCAtggtttgaattttgatt----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    258900 226 -  1189296 TGAAG--CTCATAAAAAG-ACAT-AAAAGTGCTTGAGACGAATCGACCATGTCTCCCTAGGTGAAATAAGAA--------GGAAAATCTCATTCGAATTCAATGATGCTCTCGAGAATAATG---CTC----GCATTTTTCACTTGACCGCAACGCAAC--------GACGCCGCAG---AAGTCTCATCTGTCAAGTGCCAA-TGTGCGTGTGAA---TCAAC----------TCAAGGAACTTTCGATGCTTTGAATTTTGCTTCTTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3970430 229 +  4147112 CTCAATCCTTATGAAAAG-CCATAAAAAGTGCTTGAGACGAATTGACCATGTCTCCCTAGGTGAAATAGGAA---------GAAAATCTCATTCGAATTCAATGATGCTCTCGAGAATAATGCTCCTC----GCGTTTTCCTCTTAACCGCAACGCAAC--------GATGCCGCAG---AAGTCTCATCTGTCAAGTGCCAA-TGTGCGTGTGAA---TCAGC----------TCGTGGAACTTTTCatggtttgaatttt--tgcttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=-3676.000000
s ce10.chrX              5712590 39 + 17718866 GA----GTTATGATGAGAATGATATGAGAGCTCAAAGTAACAG--
s caeRem4.Crem_Contig0   2417908 22 -  4500979 ca----GCTGTGAC------------AGATATGGAAGT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    259126 32 -  1189296 -GGTTTCTTGTcac------------aaaaatcagaatcaaaCTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3970659 24 +  4147112 -G----TTTGGGAC------------AGAGATAGAAGTGAG----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037601 40 + 21540570 I

a score=80317.000000
s ce10.chrX              5712629 241 + 17718866 ----CGAAGAAGAAGAAGCAAAACATATTTTGAGTGCTGAACAGGTAAACTGCCTTCTTTCTTT------------GTGCAAAAGTAGACAA------AA--ATATGAAGTAAGTGGTGAAACGGAG---CCAAAGAAAAAGTA-GAAAGAGAGATAATGACAGGATGTATTGATGCAATTGCTTCCCGACAAATCATTGGTCCTCATAACGACAAAAAGAG-------AAATAAGA--ATAGAGAAACCTTTTAGAGCGACTATT---ACGCATATTCAT------
s cb4.chrX              11037641 240 + 21540570 ----tgaagaagaa-------------------------gaaaggtaGGA---GCTTTCTCcttaagaattctgaagaataAATATAGACAA------AA--AAGCGAGGTAAGTGG-GAAAAGGGAGGCCCTGTGTAGAAATAGGGGAGAAGGATAATGGCAGGATGTATTGATGCAATTGCTTCCCGACAAATCATTGGTCCTCATAACgacgaaaagag------aaaaaaagaagaaagagaaaccTTTTAGGTCTGCAATAGGCAATTATGTCGCTATTCAT
i cb4.chrX              I 40 C 0
s caeRem4.Crem_Contig0   2417930 202 -  4500979 GAGTAGGAGAGAAA--CGCTGGA-------------TAGAAAAGGTAAAA---CGTTTTT----------------GAGTATAAATAGACAAATAGTGAG--ATATGAAATAAGTGG-AAAACGGAG---CCACTGAAGAAATA---GAAAGGGATAATGGCAGGATGTATTGATGCAATTGCTTCCCGACAAATCATTGGTCCTCATAacgacaaaaagag------aaaaaga----aaagagaaacctTTTA--------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    259158 224 -  1189296 -CTTTGAAGTAGGG----------------------TCGCATAGAAGAAC--------TTCTA-------------GAGTAGAAATAGGCAAATAGCAAAATATATGAAGTAAGTGG-AAAACGGAG---CCAgtggaaa---g---aaaagggaTAATGGCAGGATGTATTGATGCAATTGCTTCCCGACAAATCATTGGTCCTCATAacgacaaaaagagagaagaagaagaaga--aaagagaaacctTTTAGATCTGCAACA-ACaattatattcat------
i caeSp111.Scaffold626  C 0 I 399
s caePb3.Scfld02_0       3970683 216 +  4147112 ---TAGAAAAAGAG---------------------------TAGGTAAAC---CCTCTTTCTT-------------GAAAGAAAATAGACAAATAGCGAG--ATATGAAGTAAGTGG-AAAACGGAG---CCACTGGAGAAGTA---GAAAGGGATAATGGCAGGATGTATTGATGCAATTGCTTCCCGACAAATCATTGGTCCTCATAAcgacaaaaagag------agaaaacga--gaagagaaACCTTTTAGGTCTGCAACA-GCAATTATATT-AT------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=273.000000
s ce10.chrX              5712870 1 + 17718866 A
s cb4.chrX              11037881 1 + 21540570 A
i cb4.chrX              C 0 I 1242
s caePb3.Scfld02_0       3970899 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e caeSp111.Scaffold626    259382 399 -  1189296 I
e caeRem4.Crem_Contig0   2418132 0 -  4500979 C

a score=-8607.000000
s ce10.chrX              5712871 168 + 17718866 GGTACCCTGCAG-------AGCCTTGGATGAGAAAATCATTTTTTATATGACGTTATATGGGAGAAAG----CAGTAAAGACAATCAAAAGTGGAACGGAACT-CACTTCAGTAGTCCAAAATCGCTACTGTAAC---AAAAATGGAGGCGTCTAAGCAAAAAATCGAAATTACTGTCATAAA---------------------------
s caeRem4.Crem_Contig0   2418132 144 -  4500979 -------------------GGTCTGCAATG--GCAATTACGTAT---------ATTTATAAG----------CAGTGTCTATCCA-----TGGAGACGGAAT--GACTTTCTGCTCTCAAAAACAATcctttaca---aaaaat----------------aagctgaaaacgAGATACGTAAACAAAGGAGCTGAAGTTTCCATAACAGA
i caeRem4.Crem_Contig0  C 0 I 51
s caePb3.Scfld02_0       3970900 155 +  4147112 ---ACCCCGACCGAATATTTACCTGGGACGAAGAGATGACTTTT---------AGAAATAAGAGGAAACTTACGGTTTTTATGCAAAAACGGAGGACAGAATCAAACGGTAGCTTCATAAAATTGCACCCTTCCGAGCAAATAT----------------ATACCAGTAATGGGTATCATAAA---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I

a score=73.000000
s ce10.chrX              5713039 106 + 17718866 TTCCTTGACAAGAGC---------CAATTTTATGGTTTTATGTGTCTCCTCTCTTGGTTTTTTTCTCGCAATTTCCAGTTATAACCGTATTCATG-----CATATATGAA---------AATGGAGTAA
s caePb3.Scfld02_0       3971055 129 +  4147112 GTCattttcttgggtatattttattacttttatttctttctatctttcgtcttctgctttttctttttctcgatcACGGTGCATACGTAATTCGGTAGAACACAGATGAATCGGAGAGTaataaagtga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I
e caeRem4.Crem_Contig0   2418276  51 -  4500979 I

a score=-551.000000
s ce10.chrX              5713145 9 + 17718866 AGCTCTGAG
s caeRem4.Crem_Contig0   2418327 8 -  4500979 AGTTCTGG-
i caeRem4.Crem_Contig0  I 51 C 0
s caePb3.Scfld02_0       3971184 9 +  4147112 aaaagtgaa
i caePb3.Scfld02_0      C 0 I 192
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I

a score=-918.000000
s ce10.chrX              5713154 170 + 17718866 TGGGGTACAATGTATAATTTATGATCATGTTTTATAATAAA--CATAAATTCTTGTCACCGAGTTTATAGAGCTATGAAAAATTTGTTTTAATTCAAGTTTGTCAACGTTGAACATGTGTTGTTTTATTGAAGATGGACAACGGTTAACGGAGCAATGATTAAAAATCATTT
s caeRem4.Crem_Contig0   2418335 107 -  4500979 CACAGTTTGATGAGTGTTTTATGAC------GTATAATAAAGTCATAGGTACATTTCAT--AGTT-------------AAAATTTATgtc--ttca-----------------------ttgttttctttctaatt----ACGGTATATGGAG---------------AGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3971193 192 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I

a score=-11696.000000
s ce10.chrX              5713324 265 + 17718866 TTATGGTTCTAAATTGTAACCACTTTTAACTGAAAATAAAATTTTGATATCCAATAAA-------------------------GACAGATAAACATCAGGAATAATATTTTTTTCAAAATAGAACTTAGATCAGGTTTTCAAATTAATCGATTTAATTTTCGTGAACAGAGAGAGAGTCTATGTAGTTTTTTTTTCCGAGTTCTGAAAAAAACCGTTCAATATTTAA-----AAAAAGTAGGTATGTATCAAAATAATTTGCCTATTCTTCGATCAAAAAGGTATAATGTTTTCT
s caeRem4.Crem_Contig0   2418442 242 -  4500979 --------CGAAGAgttcaaattacaaaaaag--gaCAATATAACAATATTGTAAAGA----------------------CTGTTGATGTGAAGTACAGTACCCACAATTTTGACTAATTTGACCAAGTTGTAGGTTTTCATGGTAA--AACTGCATGATTG-AACGAGACTGCAATTCTGTGTAACTGTTGTGCTCGA---TTGATCGAATCCAATCAGTCGCTGATCCGGGAAACTaattaatttg--aaattaatctgaaaactcTGCACTTGGG----------GTGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3971385 231 +  4147112 CTgttgttcaaaaatgatagaatcTGTGATTG--AACGATTcattgatatttgaaaaatgaacatttctgcagttttcgtttttcaatgtgaatt-cagaac--------ttgaaaaattctgcCAGGTTTCATGCATT----------------ATCTTTG------Gaacacagttttttgaag----------cga---AGAATTTAAAACAATTGATTCCTTA-----GAACAATATTGATCT---CAATTTATGTGTTTTGTTTCCAAACAga----------gtttttt
i caePb3.Scfld02_0      I 192 I 161
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I

a score=14.000000
s ce10.chrX              5713589 27 + 17718866 TTTCAAACAGTTTTCGAACAATGGAGG
s caeRem4.Crem_Contig0   2418684 18 -  4500979 -------CAGTCT--GTAAAATAGTGA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3971616 161 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold626    259382 399 -  1189296 I

a score=-1491.000000
s ce10.chrX              5713616 93 + 17718866 GCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGACTTTTTATTGTTCCAAA
s caeRem4.Crem_Contig0   2418702 15 -  4500979 ------------------------------ACTT-------------------------CCTCATATTGT-----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   8392407 93 - 33334924 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCGCATTGGGCTTacgtttttgcttttttaga
i caeSp111.Scaffold629  n 399 n 399
e caePb3.Scfld02_0       3971616 161 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I

a score=292.000000
s ce10.chrX              5713709 57 + 17718866 GTTTCACCATATTCTGTTTTTATTGTATATATTAAGTTTTAAAGTACTCCtattata
s caeRem4.Crem_Contig0   2418717 38 -  4500979 ----------ATCCTACTTTTA--------ATTGAGTATTGAA-TGAAATTACTATA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3971616 161 +  4147112 I
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold629   8392500 399 - 33334924 I

a score=-5990.000000
s ce10.chrX              5713766 189 + 17718866 aattatattt--aatatCACAACC-TTCATTGTTTGATGAAATTTTCGAATGTTTGGTTTCAATTATAGTTTTGATTCCACGTCTTAAATGTCAGTTTAACATAATAACTTTTCATGATAGGACAAACTGTTATTGTTTTCGGA--CCCCTTTAAA---------------ATTGATGGATAGTGTTT---------------GAAATCAGGTTCACTGTAATC-
s caeRem4.Crem_Contig0   2418755 147 -  4500979 ------------ATTCAAACAATTCTTTATAAATTCACGTGGC----------------------ATACTTTTAA------GTCTTCATAGTCA--TTGTATTTATAATGTTCTCTCAGTT-TTGAACAGTCGTTCAACTA-----tcatccaaaa---------------attgattactCGTTTTT--------------AGAGACCATGTCCACCAGAAAC-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3971777 191 +  4147112 AAGTATATTCCTAATCAAGTAACT-TTCACAGTATGATGTaac-----------------------ttcttctga--------tttcatcAACA--TTGACGTTCTTGTATTTTGAGAATTATCGACCTATCGTTCTATTAGGTCTTCAAGTAAAACCGATCgagtttcttattttttatttgtccTTTTGTGTGGTTCATAGTATTTTACGGTCACTAGAAACC
i caePb3.Scfld02_0      I 161 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I
e caeSp111.Scaffold629   8392500 399 - 33334924 I

a score=-5101.000000
s ce10.chrX              5713955 26 + 17718866 -AAAACGCCT------ATGCTCTT-GTGATTCTA
s caeRem4.Crem_Contig0   2418902 22 -  4500979 CATAACACTATGAACCACA---CTG---------
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    259781 17 -  1189296 -AAAAGGTCA------ATACTCTT----------
i caeSp111.Scaffold626  I 399 C 0
s caePb3.Scfld02_0       3971968 12 +  4147112 ---Aaaacta------ata---tt----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I
e cb4.chrX              11037882 1242 + 21540570 I

a score=34483.000000
s ce10.chrX              5713981 171 + 17718866 TTTTAAAATATGTTCCAATAAACTG-GATGTT---CC-----ATATTTTT---AGTGACATCATGCTCTC--TTTGTTTGTTTTTTCATGTAACAAAACCAACCCAAAAATCGGCACACATCGCATTCATTTATATGATCAAGAAAAAAACC--TGGCTGATAAGTATTTCATAAGACGAAGACATT
s cb4.chrX              11039124 160 + 21540570 TTTCATAACATGTTCCAGCAGAATC--ATTTTGGTAC-----ATACTATTTTGAGTGATATCACCttctt--gtttatttttttc-aacgtATCAAAACCCTCATTAAAA-----------CGAGGCCAATTATATGGTCAAT---AGAAACGATGgatgagaatttttttttgataa---tagatt
i cb4.chrX              I 1242 C 0
s caeRem4.Crem_Contig0   2418925 155 -  4500979 TTTCATAACatgttccagaaaaaactgatttta--ag-----ATGTTATT---AGTGATATCATACCCGt--attgtttgttttc-aatgtACCAAAAACCTCAATAAAA-----------CACGTCCAATTATATGGTCAAT---AAAACC--TGGCTGATAAATATTTCATGAAGA---AAGGtt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    259798 145 -  1189296 TTTGAGAT---GTTCCAG---AATG----------CGGTATTGTGTTTTT---AGTGATATCATACTCTCtgattgtttatttttcgatgTGCCAAAAACCTCAGC-----------------CTCCCAATTATTTGGTCAAT---AAAACC--TGGctgataaatattttatgagaa-aattgGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3971980 142 +  4147112 tttcagatttcgttCCAGCAAAATG----------AG-----ATGTTATT---GGTGATATCATAC------GTTGTTGATTTTT-AATTTACCAATGACCTCATTGAAA-----------CACGTCCAATTATATGGTCAAT---AAAACG--AGGCtgataaatattttatgaGGG----TGgtt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   203911 4817 -   357190 I

a score=24637.000000
s ce10.chrX              5714152 467 + 17718866  
s cb4.chrX              11039284 451 + 21540570  
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   2419080 485 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626    259943 500 -  1189296  
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       3972122 482 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   208728 554 -   357190  
i caeJap4.Scaffold17990 I 4817 C 0

a score=-2216.000000
s ce10.chrX              5714619 24 + 17718866 ATTTTCTTTCAACAATAAATAGTA
s caeRem4.Crem_Contig0   2419580 19 -  4500979 -----ATGTTCAAAATATGTTGAT
i caeRem4.Crem_Contig0  I 15 C 0
s caeSp111.Scaffold626    260445 24 -  1189296 cgttttcttcaaaattaaattcat
i caeSp111.Scaffold626  I 2 I 9
s caePb3.Scfld02_0       3972606 24 +  4147112 GACACATTTTAagacaaatttcat
i caePb3.Scfld02_0      I 2 I 9
s caeJap4.Scaffold17990   209282 17 -   357190 atttattttttacaata-------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11039735 39 + 21540570 I

a score=204981.000000
s ce10.chrX              5714643 258 + 17718866 TTCAGAAATTTTAAATTATACTACACACTTCACAAATGCGGCCTAAATCCAAGATTTGACATTTTCGGAATCAAGGGATTGTTGTGGCTGGACAGCTCTGCCGCCCATGAAAATTTCACACGAATGTGCTCAATGATCGGTGACCAAACGTTTTCTGTGCTCCGCGGAGCCACACCAGTCGTTATTACGAGCAATGTTGATTTGATTCACGCAATATCTACAGAACATTTTGACTGCTTCCATTCTAGAATTGTAAGT
s cb4.chrX              11039774 237 + 21540570 ttcagaaatctcaaaatatatTTCACACTCTATAGAAATGGACTGAACCCCCAATTTGACATATTTGGAATCAAGGGGCTCCGATGGTTGGATAGTTCTAATGCTCATGAAAACTTTACACAAATGTGTTCTGTTGTTGgtgataaaacattttctatgcTCCGCGGTGCAACACCGGTCATTGTGACCAATGATGTTAATTTGATACATGCAATTTCGACGGAAAGTTTTGATTGT---------------------
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2419599 258 -  4500979 TCCAGAAACATCAAACTTTATTATGATCTTCATAGACGTGGGTTGAACcctcaatttgacattttcgggATCAAAGGATTGATGTGGCTGGACAGCTCTGCAGCTCATGAAAATTTCACACGAATGTGCTCGGTTATCGGTGACAAAACGTTTTCTGTGCTCCGCGGAGCAACACCTGTCGTAGTGACCAATGATGTTGACCTAATTCATGCAATTTCAACAGAacattttgattgttttcattcaAGAATAGTGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    260478 258 -  1189296 TACAGGAATTTATTACTGTACTATAAATTATATAAAAATGGGTTGAATCCACAATTCGACATATTAGGTGTAAAAGGCTTGCTATGGTTGGATAGTTCCCAAGCTCATGAGAATTTCACACGAATGTGCTCGGTTATCGGTGACAAAACGTTTTCGGTGCTCCGCGGAGCAACCCCTGTCGTTGTCACCAGTGATGTTGATTTGATTCATGCTATTTCCACAGAAAACTTcgattgttttcattcaagaATTGTAAGT
i caeSp111.Scaffold626  I 9 I 33
s caePb3.Scfld02_0       3972639 258 +  4147112 ttcagaaacctccGTTTATACTACAAACTATACAAATCAGGGTTGAATCCtcaatttgacatttttggaatcaaaggATTGTTGTGGCTGGACAGCTCAGAAGCACATGAGAATTTCACACGAATTTGTTCGGTTATCGGTGACAAAACGTTTTCTGTGCTCCGTGGAGCAACACCTGTCGTTGTCACAAATGATGTTGACTTGATTCATGCGATTTCTACAgaacattttgattgttttcactCCAGAATTGTAAAA
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17990   209299 249 -   357190 ----gaAATTCATGGCTATACTTCAAGTTATACCGTTGTGGGTTAAACCCACAGTTTGACATATTTGGATTGAAAGGGCTCCTATGGTTGGATAGCTCTGCAGCTCACAAAAACTTCACACAAATGTGCTCTGTTGTCGGTGACAAGACGTTCTCTGTGCTCCGCGGAGCCACTCCAGTGGTGGTCACAAGTGACGTCGACTTGATTCATGCGATCTGTACGGAGAAATTCGATTGTTTTCATTCGAGAATTG-----
i caeJap4.Scaffold17990 C 0 C 0

a score=-4598.000000
s ce10.chrX              5714901 23 + 17718866 --TG--TTTATGGCAATTTTCGACTAT
s caeRem4.Crem_Contig0   2419857  6 -  4500979 ------TTTGTA---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3972897  5 +  4147112 ------TCTAC----------------
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold17990   209548 10 -   357190 TATGGcttcg-----------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11040011  0 + 21540570 C
e caeSp111.Scaffold626    260736 33 -  1189296 I

a score=274.000000
s ce10.chrX              5714924 7 + 17718866 AAATTTT
s caeJap4.Scaffold17990   209558 4 -   357190 ---tttt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3972902 20 +  4147112 I
e cb4.chrX              11040011 0 + 21540570 C
e caeSp111.Scaffold626    260736 33 -  1189296 I
e caeRem4.Crem_Contig0   2419863 0 -  4500979 C

a score=-5935.000000
s ce10.chrX              5714931 95 + 17718866 ACAAAACGTTAGAACAACTgttagaatatctgaaaaagtgcttaaaaatgaccggaaaattagaagttgccggataacatttttttataaccatt
s caeRem4.Crem_Contig0   2419863 42 -  4500979 -------GTGAGAAC-----------------------TGGTTTTGATTGAac--------aaaagttgaagaagaa---------------att
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   209562 15 -   357190 --------------------------------------------------------------------------------gtttttgttgttatt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3972902 20 +  4147112 I
e cb4.chrX              11040011  0 + 21540570 C
e caeSp111.Scaffold626    260736 33 -  1189296 I

a score=-4348.000000
s ce10.chrX              5715026 29 + 17718866 ttacattttcaaataactttgagcttatt
s cb4.chrX              11040011 19 + 21540570 ---TTCCATTCGCGAATTGTGA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2419905 20 -  4500979 ttaTGCGATTAAACGATCAT---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   209577 29 -   357190 gttgtttctaacatagtttttgttttgtt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3972902 20 +  4147112 I
e caeSp111.Scaffold626    260736 33 -  1189296 I

a score=-7545.000000
s ce10.chrX              5715055 135 + 17718866 ttcaaatgtttacactaaaaaagtcatttccaatattctattaccaaattttactaaataatattgagagagcatgccacactggctcatgttgtagaattgcATTTGCTGCTCAATCCTGATTGTACACCAGGG
s cb4.chrX              11040030  29 + 21540570 -------GTTTTATTTAGAATAG--------AAAA----------------------------------------ACAATACTG---------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2419925  43 -  4500979 -------CTTTCAGCCGGAAGTGC--TTTCCGATG----------------------------------------ACCCCATTA-------------------------------------------CATCAGAG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3972902  20 +  4147112 I
e caeJap4.Scaffold17990   209606   0 -   357190 C
e caeSp111.Scaffold626    260736  33 -  1189296 I

a score=-1832.000000
s ce10.chrX              5715190 105 + 17718866 CTCAAAAATGAAAAATTATTGCAATACTGCAAAAATTCTAAAACTTTGTATATTCTACAATAATTATCTTCAAGTAAACTCTAAAAACAAATTAAAAGACTAATT
s cb4.chrX              11040059  28 + 21540570 ---------GAAAATTCatt------------aaattggaaaa---tatata-----------------------------------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3972902  20 +  4147112 I
e caeJap4.Scaffold17990   209606   0 -   357190 C
e caeSp111.Scaffold626    260736  33 -  1189296 I
e caeRem4.Crem_Contig0   2419968   0 -  4500979 C

a score=0.000000
s ce10.chrX              5715295 3 + 17718866 AAT
e caePb3.Scfld02_0       3972902 20 +  4147112 I
e caeJap4.Scaffold17990   209606 0 -   357190 C
e cb4.chrX              11040087 0 + 21540570 C
e caeSp111.Scaffold626    260736 33 -  1189296 I
e caeRem4.Crem_Contig0   2419968 0 -  4500979 C

a score=346.000000
s ce10.chrX              5715298 7 + 17718866 ATTGACA
s cb4.chrX              11040087 1 + 21540570 ------A
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3972922 7 +  4147112 ATTGATA
i caePb3.Scfld02_0      I 20 I 4
e caeJap4.Scaffold17990   209606 0 -   357190 C
e caeSp111.Scaffold626    260736 33 -  1189296 I
e caeRem4.Crem_Contig0   2419968 0 -  4500979 C

a score=77077.000000
s ce10.chrX              5715305 104 + 17718866 TTTCAGCCGGAAATCTTATCCGATGATCCAATTACATCTGACAATATTCACATGTTTGCTGCCAAAGGTGAGCGTTGGAAGCGCCTCCGGACACTAACAAGCTA
s cb4.chrX              11040088 104 + 21540570 TTCCAGCCAGAAGCTTTATCTGATGACCCGATCACAGCCGAAAATATCCACATGTTTGCTGCCAAAGGTGAGCGCTGGAAACGTCTTCGAACAATAACGAGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2419968  62 -  4500979 ------------------------------------------AATATTCACATGTTTTCTGCGAAAGGTGAACGTTGGAAGCGTCTTCGTACCCTGACAAGCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    260769 104 -  1189296 TTCCAGCCGGAAGTATTATCCGATGATCCCATTACTTCCGAGAATATTCATATGTTTGCTGCAAAAGGGGAACGTTGGAAACGTCTTCGTACTTTAACCAGCTA
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       3972933 104 +  4147112 TTTCAGCCGGAAGTTCTATCCGATGACCCTACAACATCTGATAACATTCATATGTTTGCGGCAAAAGGCGAACGCTGGAAACGTTTACGGACCATCACCAGTTA
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17990   209606 104 -   357190 ttgcagcCAGAAATCCTTTCCGATGATCCTATCACCTCGGATTACATCCACATGTTTGCCGCAAAGGGTGAACGTTGGAAACGTCTTCGAACTCTGACCAGTTA
i caeJap4.Scaffold17990 C 0 I 1

a score=910.000000
s ce10.chrX              5715409 1 + 17718866 T
s cb4.chrX              11040192 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420030 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    260873 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3973037 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   209710 1 -   357190 I

a score=43737.000000
s ce10.chrX              5715410  95 + 17718866 GGATTGTCTACAGTCAAACTGAAATTGGTGAGACATATGTT----------TAACCACGATACTCAT----CCTTTTCTGTTTAGCTATTTCCAACCATGGACACTTGT
s cb4.chrX              11040193 103 + 21540570 GGATTATCCACAGTTAAGTTAAAATTGGTATGTCCCATGACAGTTTTGT--TGTCCTTTTTATCTAA----TCATGTTTGTTCAGTTGTTCCCAACCATTGAGACTtgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420031 101 -  4500979 GGATTATCAACTGTGAAACTGAAACTAGTGGGTCACATGATACTTTTTTAATGGCCTT----TCTAA----TCATATTTGTTCAGTTGTTCCCAACTATCGAAACGTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    260874 109 -  1189296 GGACTATCAACcgtgaaattaaaattggtAAACCGCATGATCTCATTatattttcatcttcatcactTATAATTTGTTTGTTCAGTTGTTCCCAACAATCGAAACCTgt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3973038 105 +  4147112 GGCTTATCGGCtgtgaaattaaaattggTATGTCTCATGATTCCCATTTATCTTTAAAAATATCAGC----AATTGTTTGTTCAGTTGTTCCCAACCATTGAGACCtgt
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   209711 101 -   357190 GGATTATCCACAGTGAAATTGAAACTTGTAAGTTGAA-GATACATATAAAACAGTAAACATA---AA----CAATTAATGATCAGTTGTTCCCAACAATCGAGACCTGT
i caeJap4.Scaffold17990 I 1 C 0

a score=1000.000000
s ce10.chrX              5715505 1 + 17718866 G
s cb4.chrX              11040296 1 + 21540570 g
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420132 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    260983 1 -  1189296 g
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   209812 1 -   357190 G
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3973143 1 +  4147112 I

a score=192038.000000
s ce10.chrX              5715506 279 + 17718866 TTTCTGAATTTATGGATCACGTGAACAGCCTGTC---------AGATGGTCAGAGTGTTGTTATCAATCATTCCCATAGGTTTG-----------AACAAGAG-TGTTTATTTATGTATGAA---GTCATTGT-TTTTTTCAGTTTATTTCAAAACCATACGTCTTATGTGTTAGCCCGGTGCGCTTATGGTCACAAAGAGAAAAACCACAGAGTGAATAACTTTCTGGGTGTTTTCAGCAAGGCGTTTGGAAATTTTGCAGAGCTGCAAAAGTCGACTGCAGAAAAAATTGCTTGTGAGTCAC
s cb4.chrX              11040297 274 + 21540570 tttctgaatttttggatcacGTGAACAGCCTGTC---------CGATGGTCAAAGTGTTGTCATCGATCATTCTCATAGGTTTG-----------TATAATCATCTTCTATTTATagattt----gacttt------tttcagtcTCTTTCAAAATCATACATCTTACGTTCTAGCTCGATGTGCTTACGGTCACAAAGAGCAAAATCATCGAGTCAACAATTTTCTTTCGGTGTTTTCTGATGCGTTCGGGGCATtgtcagattttcaaaaatcaatgacTGAGAAAATTACTTGTGAGTCAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420133 277 -  4500979 TGTCTGAATTCTTGGATCACGTGAACAGTCTTTC---------AAATGGTCATAGTGTTGTGATCAATCATTCCCACAGGTTAA-----------AACaataactttcaaatttcgacACT----GTGTTTC---TATTTCagtctttttcaaaatcacacTTCTTATGTGCTAGCCAGATGTGCTTACGGTCACAAGGAGAAGAACCATCGGGTGAATAACTTTTTGGGGGTTTTCTCCAATGCATTCGGTGCTTTctcagatttccaaaaatccaCTGCCGAAAAAATCACATGTGAGTCAC
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold626    260984 277 -  1189296 tttctgaatttttggatcACGTGGACAGTCTGTC---------AGATTCAAACAGTGTTATTATTAATCATTCTCATAGGTTTG-----------AACGATTT-CGTCTATTTATAGAAAT----ATCTTTC--TTATTACAGTCTATTCCAAAACCACACATCTTATGTACTGGCCAGATGCGCGTATGGtcataaagagaaaaaccatCGTGTCAACAACTTTTTGGGAGCTTTCACAAATGCATTCGGTGCACTTTCAGAACTACAAAAGTCGACTGCAGAAAAGGTTACTTGTGAGTCAT
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       3973144 278 +  4147112 tttctgaatttttggatcaCGTGGACAGCCTTTC---------AGATGGTCACAGAGTGGTTATCAATCATTCGCATAGGTTTG-----------AACGATGa-tgtttatttttagaaatg---atcTTTC--TTATTTTAGTTTGTTCCAAAATCATACATCCTACGTGTTAGCCCGATGCGCATATGGTCACAAGGAGAAGAATCATCGAgtaaataactttttgagtgCTTTTACAAATGCATTTGGGGCGTTTTCTGAGCTGCAAAAGTCCGCTGCAGAAAAGTTTACTTGTGAGTCAC
i caePb3.Scfld02_0      I 1 I 1
s caeJap4.Scaffold17990   209813 304 -   357190 TTTCCGAGTTTTTGGATCACGTGAACAGCCTCTCCAAAGACCGAAAAGACCGTAATATTGTCATCAATCACTCTCACAGGTTTGCTGGTTAattaaacaacttttttttagattaaaaaaaGCATAACTTTTGATTATCACAGTTTGTTCCAAAATCACACTTCATATGTTCTCACAAGATGCGCTTATGGGCACAAGGAGAAAAATCATAATTcgaattattttttgacagttttctcAAAAGCTTTCGGTGCTTTTGCTGAATTCCAAAAGTCTACAACTGAAAAACTTTCCTGTAAGTTAT
i caeJap4.Scaffold17990 C 0 C 0

a score=-11095.000000
s ce10.chrX              5715785 34 + 17718866 GTA-TCGTTTTAGA---------CAGCT-ATTTCAGTGGCA---CGAA
s cb4.chrX              11040571 32 + 21540570 -TA-AAACATAATT---------CATCT-AATTGAGAAATctat----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    261262 31 -  1189296 TTACTTGCCTTATC---------CTCCT-CATTTGCCCTTT-------
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       3973423 31 +  4147112 TTG-TTGTTTCACC---------CTTTTAAATTTAGATATT-------
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   210117 34 -   357190 TTAGTTGTACTAGTGAAAAAGAATAATT-AATTCA-------------
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2420410 31 -  4500979 I

a score=215378.000000
s ce10.chrX              5715819 328 + 17718866 TTGCAGATATCTTCCCAGAAACAAAGCTAATTTTTAAAAAT------AGTTTTGTCGGACACTTCCTAAAAAGT------GCAACTCAACAAAAATTCCTGGATTATTTACTTCACCTTATCTCCAATTTCCAATCTCGGAAAAATGTTGATAACAATAATG------GAATAT--GCTGCACGGAAAACGATCATTACAGTCTGCTCGGATTCTTTTTTGAACATCACAATGAGAAGAAGCTGATCGAGAAGGCAGAAGGGCAAATTGATATGAAAAAAGTGAAAGTCGAGAAGAGTATCTCCTATGAGGTGTGAGTCTTGAT-----TGTC-TGTAGTCTTCTAGTTAAA--CA
s cb4.chrX              11040603 336 + 21540570 ttgcagattttttcccagaaatgaagtcaattttcaaaaac------aacttaTTTGCCCAATTTTTACAAAGT------acaaatcaacaaaaattcttGGATTATTTACTGAATctgatctcaaaatttcaatcccGAAGAGTTATCGAAAACAATAATAATGAAGAATCAA--GCGACCCCGAAGCTGGCAAGTACAGTTTATTGGAGTTTTTCTTCGAACAtcatcatgaaaaaaagattgtGGAAAAGGCGGAAGGGCGGATTGACATGAAGAAAGTGAAAGTCGAGAAAAGTATTTCTTATCAGGTGTGAGTCTCGGT-----TATCTTGTAGTCTAAAAAACGCAG-TA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420441 328 -  4500979 TTGCAGATTTCTTCCCAGAAATGAggctaattttcaaaaat------agttttgttgGCCACTTTCTTCAAAGT------GCAAATcaacaaaagtttttggattATTTACTTCATTTAATCTCAAGATTCCGATCTCGCACAATTAATGAGAACAACAATA------AGCCAA--GTGAGAAAGAACCGGACAACTACAGCCTTTTGGAGTTCTTCTTTGATCATcataacgaaaaaaaattggtggaaaagGCGGAGGGACAGATAGACATGAAGAAAGTGAAAGTCGAAAAAAGTATCTCCTATCAGGTGTGAGTCTCGGT-----GATC-TGTAGTCTTCTAGTCAGA--CA
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold626    261293 331 -  1189296 CTCCAGATTTCTTTCCTGAAATGAGGctaatcttcaaaaat------agttttgttGGCCAATTCCTTCAAAGT------GCAAATCaacaaaagtttttggaCTATTTGCTTAACCTTATTGCGAAATTTCAAACACGAAGAATATGTGACAACAACAATC------AGTCGT--GCAACCCGGAAACTGATCATTACAGTCTATTggagtttttcttcgatcatcataatgagaagaaattgattgaaaaagcAGAGGGACAGATTGACATGAAGAAAGTGAAGGTCGAAAAAAGTATATCATACCAGGTGTGAGTCTTGTT----CTATC-TGTAGCCTTCCGAGTGTAGACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3973454 330 +  4147112 TTGCAGATATCTTCCCCGAAATGAGGCTAATTTTCAAGAAT------AGTATTGTTGGCCAATTTATAAAAAGT------GCAAATCAGCAAAAGTTTTTGGACTATTTACTTCACCTCATCTCAAAGTTTCAATCAAGAAGAATCTCAGAAAACAATAATC------AATCGA--GTGACCCGGAAACTGGTCATTATAGTTTAttggaattcttttttgatcatcACAATGAGAAGAGATTAGTGGAAAAAGCAGAAGGACAGATCGacatgaagaaagtgaaggtCGAGAAAAGTATCTCCTATCAGGTGTGAGTCTTGTT----CTACC-TGTAGCC-TCTGACCTTAGACA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   210151 318 -   357190 -TTCAGATATATTCCCTGAAA------------TCAAAAATGCCATAAAATTTGTTGGTCGGATTTGCCAAACTTCTCTCACACCTCAACAACGGTTTCTTTATTATTTGTTGCATCTAATTATGCGATTTCAATCCCG--------TCGGAAGCATTTGCT------GGCTATTGAAAAACCAGATTTAGATGGTTACAGTCTGTTAAACTTTTTCTTTGACCATCACAatgagaaaaagttggtggaAAGGGCGAATGGGCGAATCGATATGAAGAGAgtaaaagtggaaaaaaggATCTCCTATCAGGTGTGAGTCTTGTCTTACTTATT-TGTAGTTAAACA----------
i caeJap4.Scaffold17990 C 0 I 4530

a score=9413.000000
s ce10.chrX              5716147 14 + 17718866 CACTGAAGTTTATG
s cb4.chrX              11040939 14 + 21540570 CATTAGAGTTTCTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420769 14 -  4500979 CACTAGAGTTTGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    261624 14 -  1189296 CATTAGAGTTTCTG
i caeSp111.Scaffold626  C 0 I 116
s caePb3.Scfld02_0       3973784 14 +  4147112 CAATAGAGTTTCTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   210469 4530 -   357190 I

a score=-8854.000000
s ce10.chrX              5716161 64 + 17718866 TCATTCACTACAAACATCTTCTTCGTCAACAAAAATAATGCATCAATAGTTCTGCTATTTCTGC
s cb4.chrX              11040953 56 + 21540570 CTGGCTACAATGTTCATTTGTTTtg----caaatattgaaaatt----gttttgcaAAATATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420783 50 -  4500979 T---------CCTTCaaatattttg----caaaaattgtttattaa-GACTTCACTTACCACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3973798 24 +  4147112 -------------CTAACTAC----------AGAATT----Att----tctttgc---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   210469 4530 -   357190 I
e caeSp111.Scaffold626    261638 116 -  1189296 I

a score=-26974.000000
s ce10.chrX              5716225 489 + 17718866  
s cb4.chrX              11041009 566 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3973822 286 +  4147112  
i caePb3.Scfld02_0      C 0 I 15
e caeJap4.Scaffold17990   210469 4530 -   357190 I
e caeSp111.Scaffold626    261638 116 -  1189296 I
e caeRem4.Crem_Contig0   2420833   0 -  4500979 C

a score=-341.000000
s ce10.chrX              5716714 7 + 17718866 ttttcaa
s cb4.chrX              11041575 5 + 21540570 TATTT--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3974108 15 +  4147112 I
e caeJap4.Scaffold17990   210469 4530 -   357190 I
e caeSp111.Scaffold626    261638 116 -  1189296 I
e caeRem4.Crem_Contig0   2420833 0 -  4500979 C

a score=794.000000
s ce10.chrX              5716721 11 + 17718866 aaacaataatt
s cb4.chrX              11041580  8 + 21540570 ---CACTGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2420833 11 -  4500979 AAACAATAAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3974108 15 +  4147112 I
e caeJap4.Scaffold17990   210469 4530 -   357190 I
e caeSp111.Scaffold626    261638 116 -  1189296 I

a score=-3932.000000
s ce10.chrX              5716732 20 + 17718866 aaattttCAAATTACGATTA---
s cb4.chrX              11041588 21 + 21540570 --TTCCCTCATTACCAGTTTTCA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2420844 18 -  4500979 --ACACATCAATCATAATT---A
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    261754 16 -  1189296 aaatattcaaatgact-------
i caeSp111.Scaffold626  I 116 C 0
e caePb3.Scfld02_0       3974108 15 +  4147112 I
e caeJap4.Scaffold17990   210469 4530 -   357190 I

a score=172700.000000
s ce10.chrX              5716752 242 + 17718866 TTCAGGAAATTACGGCACAGTGCAAGTTTATCTCTGTGGCCGGGTTTGACACTACATCCAATACGCTGACTTTGCTTTTCAACTTTCTTGCTAATAATCCGGATGTTCAGGACAAAATCTACGAGGCTGAAATAAAGAATCAACCGGAACAAATCAGCTTTGAAACTGTATCTTCTCTTCGACTACTCCAAAATTGTATTTTTGAAACATTGCGACTTTTTCCACATGCTTCACCGTAAGTT-----
s cb4.chrX              11041611 242 + 21540570 TGCAGGAAATCACTGCTCAATGCAAATTTATCTCTGTTGCTGGCTTCGATACAACTGCCAATACTTTGactcttcttttcaattttttggcacaTAACCCGGCAATCCAGGAACAAATCTATAACTCCGAAATCAAAGGAAACAAGAGTAGTATGAATTTCGAGACCGTTTGCTCTCTTCCCATCCTACAAAATTGCATTTTCGAAACACTTCGGCTGTTTCCACATGCCTCACCGTAAGTG-----
i cb4.chrX              I 2 I 2
s caeRem4.Crem_Contig0   2420864 242 -  4500979 TTCAGGAAATCACTGCACAGTGCAAATTCTTATCGGTTGCTGGGTTTGACACAACTGCCAATACGCTAACAttgcttttcaattttttggctcacaatccaaaaattcaagacCGAATTTTCAATGAGGAAATAAAAAGTCATTCGGACAAAATCGACTTTGAAACTGTCTGTTCCCTCCCCCTGTTACAGAATTGCATATTCGAAACTCTTCGATTGTTTCCACATGCCTCTCCGTAAGTG-----
i caeRem4.Crem_Contig0  I 2 I 3
s caeSp111.Scaffold626    261770 239 -  1189296 TTCAGGAAATCACTGCACAATGCAAATTCATTTCGATCGCTGGTTTTGACACGACTGCCAACACTTTgactcttcttttcaacttGCTGGCTAACAATCCGGATATacaaaaacagatttttgaagctGAAATTCAAAGCCAT---GAGGTTGTTAACTTTGAGACTATGTGTTCACTTCcacttcttcaaaattgcATCTTCGAAACACTGCGACTATTTCCACACGCGTCCCCGTAAGCT-----
i caeSp111.Scaffold626  C 0 I 29
s caePb3.Scfld02_0       3974123 239 +  4147112 ttcaggAAATCACTGCTCAATGTAAATTTATTTCTGTGGCCGGTTTCGACACAACTGCCAATACCTTGACACttttgttcaactttttggCAAACAATCCCGACATCCAGAAACAAATATTTGATACTGAAGTTAAGGGCCAC---GACAAagtggattttgaaactgtatgtTCTCTTCCACTGCtccaaaattgtatttttgagaCTCTCCGACTGTTCCCACATGCCTCTCcgtaagtt-----
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   214999 247 -   357190 TTCAGGAAATAAACGCTCAGTGCAAATTTCTTTCTGTTGCCGGTTTCGACACCACTGCAAACACGCTGACTcttcttttcaatttcttgGCACACAAcccagaaattcaaaaagttcTATACGAAACGGAAATCAAAGGAAACCCAGAAAATGTGGACTTTGAAACCATCCAATCATTGAAACTACTGCAAAACTGCATTTTCGAATCTCTGCGATTGTTTCCCCATGCGTCACCGTACGTGATTTT
i caeJap4.Scaffold17990 I 4530 C 0

a score=-6746.000000
s ce10.chrX              5716994 31 + 17718866 TGCATGCGTTCAATATTTTCAAGTTATGAAA--
s cb4.chrX              11041855 22 + 21540570 ---------Taccttttttccgaattttatc--
i cb4.chrX              I 2 I 7
s caeRem4.Crem_Contig0   2421109 22 -  4500979 ---------TAATATGATTCCACTTTCTATC--
i caeRem4.Crem_Contig0  I 3 I 7
s caePb3.Scfld02_0       3974362 31 +  4147112 ttttcttaaaaaaaagtttcaaatctcGATC--
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   215246 27 -   357190 ------TGCAAActttatttaaaaagaaaaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    262009 29 -  1189296 I

a score=328694.000000
s ce10.chrX              5717025 443 + 17718866  
s cb4.chrX              11041884 488 + 21540570  
i cb4.chrX              I 7 I 2497
s caeRem4.Crem_Contig0   2421138 501 -  4500979  
i caeRem4.Crem_Contig0  I 7 I 43
s caeSp111.Scaffold626    262038 490 -  1189296  
i caeSp111.Scaffold626  I 29 I 3
s caePb3.Scfld02_0       3974395 492 +  4147112  
i caePb3.Scfld02_0      I 2 I 9
s caeJap4.Scaffold17990   215273 497 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-12715.000000
s ce10.chrX              5717468 49 + 17718866 CTAGCCTTCTCATATTATATG---ATGAACATTTAAAAACAAATTGTTCATT-------
s caeRem4.Crem_Contig0   2421682 38 -  4500979 ATAACATTC----ATTAT------ATTAATAAATCAAGTAGCATCCTT-----------
i caeRem4.Crem_Contig0  I 43 C 0
s caeSp111.Scaffold626    262531 19 -  1189296 ------------------------------agcttAAAATGTCttgttc----------
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3974896 24 +  4147112 ----------------------------ATagtcaaaattttattgtttttt-------
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17990   215770 41 -   357190 ------------------ACGTGTTTAAAGTTTTTGACGTGTTTtattcatttgttttt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11042372 2497 + 21540570 I

a score=103887.000000
s ce10.chrX              5717517 283 + 17718866 TATTAATTTCAA-AAATTGAATAAATTGCAAAAGAA--AAGA-----------GGTTTTTTTTTAATAATCACT------T---------GTCAGATTTATGAGCCTGGTTTCGAGCTCTGCG--AATGAAATTTCGTCGTTTTCTAGTTGCGTGATCTTCAAATCGAATAGTT-TCCGTTCCGGTGCAAGGTCCCCATAGCTTGACAGTCTCCAACTTTTCCAGCATTTCTCCATTGTGCATCAAACTGTCACGAGCTTTGTATCCAGTAATAGTAGCGTTTAGGGAAGTTATATCCAATTTAGAGAACCTGAA
s cb4.chrX              11044869 285 + 21540570 TATTTATTTGAATATGTCAATTCAGT--CAAAacaa--aagt---------------ttc--tgaaaaattcgc------tCTCAGAATTTGCAGTTTTATCCATCTGATTGCGGGTTCTTCT--GATGAagtttctcctttttcttgttGAGTGATCTTCAAATC-gaattatctcatttctgaTGCATGGTCCCCACAATTCGACGGTTTCGAGCTCTTCAAGAATCTCCCCATTATGCATCAAACTGTCACGAGCTTTGTATCCCGTGATACTAGCGGTGGTGGAATTCatatcaaatttggaaaatctgaa
i cb4.chrX              I 2497 I 31
s caeRem4.Crem_Contig0   2421720 269 -  4500979 -TGTTATTTAAA-AAgttactatttt--caaaaaaa--gagt------gcACTGGCATCCGATGAAAAATCAGC------T-------------------------TGGTTGCGGTTTCTTCT--AATAAagtctcttcttttcctggtGACGTGATcttcaaatctgaaatgt-tCTGTTCTAACACATGGTCCCCATAAGTCGACGGTCTCCAGTTGCTCAAGTATCTCCCCATTGTACATTAAACTGTCACGAGCCTTGTACCCTGTGATAGTCGCTGTAGAAGCGGTCATGTCGAACTTGGTGAATCTGTA
i caeRem4.Crem_Contig0  C 0 I 42
s caeSp111.Scaffold626    262550 263 -  1189296 ----------aa-aattcattcataT--TAACTGCA-------------------------TTTACAAATCCGA------T----ACATCTGCCGTCTTATCCATTTGATTGCGGGTTTTACG--AATaaagtttcttctttttctggtaACATGATCCTCAAATCTTAGATAT-TCAGTTCTCACACATGGTCCCCATAGCTCAATTGTTTCCAACTTCTCAAGTGTCTCTCCATTATGCATCAAACTATCACGTGCTTTGTATCCAGTGATTGTCGCAGTGGTCGAAGTCAAGTCGAACTTTGAAAACCTAC-
i caeSp111.Scaffold626  C 0 I 35
s caePb3.Scfld02_0       3974920 285 +  4147112 -----cacagGA-ATTCCACATAAGT--TGAATACAGTAAGT---------------TATGTTCACAAATACCACATGTTT----GCATCAGTAGCCTTGTCGACTTGTTGACGAGTTTTACG--AATGaagtttcttctcttccttgtGATATGGTCCTCAAATCTCACATAT-TCAGTCCTCACACATGGTCCCCATAAATCCACAGTCTCcagtttttcaagaatctCTCCGTTGTGCATCAAACTATCTCTAGCTTTGTATCCAGTTATTGTGGCTGATGTTGAATTTAAATCGAATTGTGTGAACCTGAA
i caePb3.Scfld02_0      C 0 I 36
s caeJap4.Scaffold17990   215811 283 -   357190 tttttgtttaaa-agaTTTCACATTT--GAAAGAAA--AGGTCTTAAGTCTCCGTTTTACAATTAAGAATTAAC------T----------------TTCATTGCTTGCTCTCGGCTTTTCCTTAGATGAAG--CCATCTCTTCCTCGTAACGTGATCCGCAAAAATATAATGC-TCGTTACTGTCACAAGGCCCCCACAAATCAATTGTCTCCAACTTCTCCAAAATTTCACCATTATGTAACAGACTATCTCTTGCTTTGTAACCAGTCACTGTACCATTGACACCGTTAAAGTCAAACTTGGAGAATCTG--
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              5717800 18 + 17718866 TTGAAAAATCAATTTATT
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e caeJap4.Scaffold17990   216094  0 -   357190 C
e cb4.chrX              11045154 31 + 21540570 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=382.000000
s ce10.chrX              5717818 49 + 17718866 ATATGACACTGTTTCAAGACTATATATTATAACTAAAATCAGCCTAAaa
s caeJap4.Scaffold17990   216094 37 -   357190 ------CAAGATTTCAAT------TATTTGAGCCCAGAACAgcgtgaaa
i caeJap4.Scaffold17990 C 0 I 29
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e cb4.chrX              11045154 31 + 21540570 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=0.000000
s ce10.chrX              5717867 14 + 17718866 attacagcccagag
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e caeJap4.Scaffold17990   216131 29 -   357190 I
e cb4.chrX              11045154 31 + 21540570 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=-132.000000
s ce10.chrX              5717881 131 + 17718866 ggatcaccaccaggcagtgtacctgaat-----cccagatccgcagtgcat----agcacttgaataacggatcgtcctttcattttttttaaAAAGGGAATAGCACTAAAAGTGAACAAAAATTTCTATAATACCAAAA
s caeJap4.Scaffold17990   216160 125 -   357190 gaatca-tatcgtgca-tttatgtaaattaggctctagatatttaatgaattcgcgtcgtttgattaacgtttacacatttcactcatt------------cagccacaaaaat-cacaaaaatcagtgccgttacaaga
i caeJap4.Scaffold17990 I 29 I 38
e caePb3.Scfld02_0       3975205  36 +  4147112 I
e cb4.chrX              11045154  31 + 21540570 I
e caeSp111.Scaffold626    262813  35 -  1189296 I
e caeRem4.Crem_Contig0   2421989  42 -  4500979 I

a score=0.000000
s ce10.chrX              5718012 84 + 17718866 TATTTTTCGGAGTGTTCTAGGATGATATTCGGTTTTATTGCATGATTATATGGAATAAAAACTAAATTCCAGTCGCTAATTTTC
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e caeJap4.Scaffold17990   216285 38 -   357190 I
e cb4.chrX              11045154 31 + 21540570 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=951.000000
s ce10.chrX              5718096 58 + 17718866 GGACAAG---ACCAAATGGTCAAAGTTTTTGAACTTTTAAAAAATTAACGCAATCCTTTTA
s caeJap4.Scaffold17990   216323 57 -   357190 ggacaaagtcgccaaatgttgcaggcttgtg----tatatacaattaattaatttatttta
i caeJap4.Scaffold17990 I 38 I 99
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e cb4.chrX              11045154 31 + 21540570 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=0.000000
s ce10.chrX              5718154 116 + 17718866 AACTTTCAGCCGCCATAAAACTTTATTAATAGTCTGAGCGTGTTTGTAAGTTTTAAACAAATTTTGCTACACATTTTAAGAACATTTATAGAGCAATAAAATTGGACCCTAAACAT
e caePb3.Scfld02_0       3975205  36 +  4147112 I
e caeJap4.Scaffold17990   216380  99 -   357190 I
e cb4.chrX              11045154  31 + 21540570 I
e caeSp111.Scaffold626    262813  35 -  1189296 I
e caeRem4.Crem_Contig0   2421989  42 -  4500979 I

a score=182.000000
s ce10.chrX              5718270 2 + 17718866 TT
s cb4.chrX              11045185 2 + 21540570 TT
i cb4.chrX              I 31 C 0
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e caeJap4.Scaffold17990   216380 99 -   357190 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=846.000000
s ce10.chrX              5718272 3 + 17718866 TGT
s cb4.chrX              11045187 3 + 21540570 TGT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   216479 3 -   357190 tgt
i caeJap4.Scaffold17990 I 99 C 0
e caePb3.Scfld02_0       3975205 36 +  4147112 I
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=-2999.000000
s ce10.chrX              5718275  4 + 17718866 ------TAAT--
s cb4.chrX              11045190  2 + 21540570 --------TT--
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3975241  1 +  4147112 ---------T--
i caePb3.Scfld02_0      I 36 I 3
s caeJap4.Scaffold17990   216482 12 -   357190 taaATTCAATCC
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    262813 35 -  1189296 I
e caeRem4.Crem_Contig0   2421989 42 -  4500979 I

a score=293910.000000
s ce10.chrX              5718279 420 + 17718866 TACCTGTTATTTGGTACACTCCCTATGTACACAAATGGGATTTTGTACCCTCCCATGCACTCCAAAACAACTTCGTGTCTACCATGCACATGTGCATAAAAGACTCCAAGCCGTGGCACTTTTTGATTGGATTTAAAAGTTGCCTTCATATTTAACATCCAACTGTTTAACATCCGTTTGACCTTCACGCTACGAGTGCCTGAGCATTGGTGCAAGTTGACGAGGATTGGGAGAGATGTATTCTAAAATG-TT--------------TGAAATTGCGTGAATAAAATTT----------------CAAGACCCT---------------------GTACACTAAGAATTATAAGTTCCTTGCTAAGATATTCGATCGGTGGAACCAAGTTCCAGTTGACAAACAGGGAAGATACTGTCACATTGTAGTCAATGGCGTTATTGAGTTGAATTACAAAAGCACACATTTTTCCT
s cb4.chrX              11045192 469 + 21540570 TACCTGTTATTTGGTACACTTCCAATGTACACAAAAGGCACTTTGTATCCCTCGATACACTCCAAGGACACTTCATGCCGTTGGTGCATATGTGCATAAAATGCTCCAATTTTCGGCACCCGCtgatttgattcaaaaatggTCTTCACATTCGACATCCAACGTTTTATCATCATTCGAATCTTATGAATATGCATGCTCTCACACTGGTGCATATTCAAAAGAATTGGAAGAGAAGTACTCTAAAAAGATTGAGTTGagttg---agaaaatgaaaaaaaataacgtgGATGTGATGATAGAAAATAGCTCAATAAAAACGCAAGTTGTTGACTTACCCCTAGGAGGTTCAACTCGTTGTGAAGATATTTCATTGGAGACGAAATATTCCATTTCacgaaaagagaagaaaactgCACATTGTAGTCGATTGCATTGTTGAGTTGGATTATATAAGCGCAAAGTTTgcct
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2422031 453 -  4500979 TACCTATTATTTGGTACACTCCCAATGTAGACAAATGGCACTTTGTACCCTTCAATACACTCTAAGGTCACTTCATGTCTTTGATGCATATGTGCATAAAATGCTCCAATTCTTGGCACTCTGTGATttgattcaaaacttttcttcaCAGTTAACATCCAACGTCTTAACATCATTTTGATCTTATGAATATGCATACTTTCACATTGGTGCATATTCAAAAGAATTGGAAGAGAGGTActctaaaaag-ttgaaaaaaatagaataaaagatgagagaaaaaaaagt-------------gaggagAGTTCACTAGAGTT-----TACTTTACTCACTCCAAGAAGGTTCAACTCGTTATGAAGATATTTCATCGGAGAAGAGATATTCCATTTCACAAAAAGAGATGAGAATTCCACATTATAGTCAATTGCATTGTTGAGTTGGATAACGAAGGCACATAGTTTTCCT
i caeRem4.Crem_Contig0  I 42 C 0
s caeSp111.Scaffold626    262848 417 -  1189296 caccTGTTATTCGGAACACTTCCAATGTACACAAATGGTACTTTGTACCCCTCAATGCACTCTAAGGTCACTTCATGTCTCTGGTGCATATGTGCATAAAAAGCCCCAATTCTTGGCACTCTTTGATTCGATTCGAAAGACTTTTTCACACTCGACATCCAACGGCTTAacatcattttgattttatgaaTATGCATACTCTCACACTGGTGCATATTCAAAAGTATGGGAAGTGAAGTGCTCTGAAAAg-ttga------------taaaaatgagaataggCACTTT----------------AAAA--------------------------TTACCCCCAGAAGATTCAATTCGTTGTGAAGATATTTCAttggagaagagagattcCATTTCACGAAGAGGGATGAAAATTGGACGTTGTAATCGATTGCATTATTCAGTTGTATTACAAAAACACACGatttccct
i caeSp111.Scaffold626  I 35 C 0
s caePb3.Scfld02_0       3975245 421 +  4147112 TACCTGTTATTTGGTACACTCCCAATGTATACAAATGGTACTTTGTACCCCTCAATGCACTCTAAAGTGACTTCGTGTCTCTGGTGCATATGTGCATAAAAAGCTCCAATTCTCGGTACCCGgtgattcaattcaaaacttttcttcacACTTGACATCCAACGCCTTAACATCATTTTGATCTTATGAATATGCATGCTCTCACATTGGTGCATATtcagaagaattggaagagaagtactctaaaaaa-ata--------------aaagatgatag-aaatatttc----------------aaaagttcaat-------------------ttacCCCGAGTAAGTCCAATTCTTTTCGAAGATATTTCATGGGAGACGAGAGATTCCATTTGACAAAAAGTGATGAGAACTCTACATTGTAGTCAATTGCATTGTTAAGTTGGAtcacaaaaacacaattttttcct
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   216494 429 -   357190 TACCGATTATTAGGCACACTTCCCACATAAACAAACGGTACTTTGATCCCTTGAATGCAATGCAAGTGCACTTCATGTCTTTGGTGCATATGTGCATAAAACACTCCGACTcgtggcatttttttattcgattcAAGTTCTGTCTTTATGCCGGCTAACCACCGAGTTAACATCATTTTAACTTTATGAATATGTATGTTCTCGCACTTGTGCATATTCAAAAGAATCGGAAGAGAGGTgccctggaaaa-------------------aaaatgggtggaaaaaaaGG-----TGTGGATGTGAAGGTGTTGATC-------------------TCACCTTCAAAAGATTCAGCTCATTGTGAACGTACTTCATTGGCGATGTCAAGTTCCACTGGAcgaaaaccgaagaaaatgaTACGCTGTAGTCGATAGCGTTGTTTAGTTGAATTACAAAGGCGCAGGTTTTGCCT
i caeJap4.Scaffold17990 C 0 I 39

a score=-9860.000000
s ce10.chrX              5718699 15 + 17718866 TAA-AACTAAA-----GTATC--
s cb4.chrX              11045661 10 + 21540570 ttg-aaaaatt------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2422484 15 -  4500979 GGA-ATACACATTTGC-------
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold626    263265 17 -  1189296 gaa-aaatctt-----gaaCAAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3975666 18 +  4147112 gaatacaccaa-----aaattgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   216923 39 -   357190 I

a score=-5772.000000
s ce10.chrX              5718714 24 + 17718866 TCGTATTTTAACT------GACTACTT---------CTG
s cb4.chrX              11045671 37 + 21540570 --gcgtTTTTGGTCGGAAAAAGAACTAAAAATCTACCTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    263282 20 -  1189296 --------TAGGT------TAGATCTAGAAT-----CTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3975684 20 +  4147112 --------ttggg------aAAAGTTTTCTA-----TTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   216923 39 -   357190 I
e caeRem4.Crem_Contig0   2422499 40 -  4500979 I

a score=-2371.000000
s ce10.chrX              5718738 10 + 17718866 ATACCGTTTT
s cb4.chrX              11045708  3 + 21540570 A-AC------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    263302  9 -  1189296 A-accttttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3975704  9 +  4147112 A-ACCTTGTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   216962 10 -   357190 ataCCAGACG
i caeJap4.Scaffold17990 I 39 C 0
e caeRem4.Crem_Contig0   2422499 40 -  4500979 I

a score=176915.000000
s ce10.chrX              5718748 280 + 17718866 TGGAGCAAACTCTTTCAGTGTAAGCCAAACTTCCAGTGTACTCAACATCCATGTTTACCGGCTTTCGCGTAATGTCAGCAACAATCGAATGGTTTTTCACATAGTCGGTATACCTG------------AA-----TTAATTTT---TTTTTGAAAAGTTAGCTA-AAGTAAAT----------------TGCTAACCATGAGAGCATTGTATGCGCACAAAAGTTAAGAACACAGTCGTTGACATTGTTGTCGTAATCATGATTCCCTAATCCCAACAGTAATGGAATAGGAAAATTGTCGTACCAGACTTTCTGAA
s cb4.chrX              11045711 295 + 21540570 CAGAGCACACCCTCTCGGTGTAGGCTAGACTTCCAGTAAATTCTACATcaaatttcacagtttttcgTTGAATGTCCGCAATTAGAGACATGTTCTTAACATAGTCAGCGtacctgaaaatgagaaaaaaaaat-taaattaaaaataattttaaaaaaaccca-TGGTAGCT--------------------TACCAAGACAACATTGTGTGAGCGCAAAAGTTCAGAGCGCAATCATCGATATTGTTTTGATAGTCATGGTTTCCTAATCCAAGGATGAACGGGGTTGGGAAGTTGTTGTACCAAACTtgctaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2422539 277 -  4500979 TAGAGCAAACTGTCTCTGTGTAAGCCAAACTTCCAGTGAATTCCACATcgaattttactgtttttctctgaatatcCGCCACAAGAGACATGTTCTTCACATAGTCTGTATAcctg------------aaaaac-tgattttagaGACATAATATAACTACACA-AA--------------------------TACCAAGAAAGCATCGTATGAGCACAAAAATTTAAGGCACAATCGTTTATATTGTTCTGATAATCATGGTTTCCTAACCCAAGAATGAAAGGTATCGGGAAGTTGTTGTACCAGACttgctgaa
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold626    263311 281 -  1189296 tcgaacaaacTCTCTCTGTATAAGCCAAGCTTCCACTGAATTCAACATCAAAATTCACTGATTTCCTAGTGATATCCGCCACTATCGACATATTCTTTACATAGTCAGCATacctg------------aaa----tcaaaaca---aaaattcaaaactatccA-AACCGGTT----------------AATCCACCAAGAGAGCATTGTATGAGCACAAAAGTTCAAAGCACAATCATCGATGTTATTTTGATAGTCATGGTTTCCTAATCCGAGAATAAAAGGGATTGGGAAGTTATTATACCAGACTTGCTGAA
i caeSp111.Scaffold626  C 0 I 23
s caePb3.Scfld02_0       3975713 283 +  4147112 AGGAGCAAAGTCTTTCAGTATAGGCCAAACTTCCGGAGAACTCAACAtcaaatttcacagttttcctCGTAATGTCTGCTATGATAGACATGTTTTTCACATAGTCAGTGTACCTG------------CAAACTGTTAATCCGCTTATATTTCAAGTTTGT-----GTCAGTT-----------------ACACACCAAGAAAGCATCGTATGAGCACAAAAGTTCAGAGCACAGTCATCGATATTGTTTTGATAATCGTGATTTCCTAATCCAAGGATAAACGGGATTGGAAAGTTGTTGTACCAGACTTGCTGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   216972 304 -   357190 ATGAGCAAACCCGTTCAGTGTACGCCAAGCTTCCCGAGAACTCCACATCAAAATTAATCGTCTTCCGCTCTATATCAGCAACCAATGATCTGTTTTTAACGTATTCCGCGTACCTg------------gaagtt-tttatttatttttttttggcgttctCTCACAATCAGTTCAATAATGTATCTATGTACCTACCATGAAAGCATTGTGTGAGCACAAAAGTTAAGAGCACAGTCGTTAATATTATTTTCATAATCATGGTTTCCCAAACCAAGGAGAAATGGAATTGAAAAGTTGTTGTACCAGAAttgctaga
i caeJap4.Scaffold17990 C 0 C 0

a score=-1093.000000
s ce10.chrX              5719028 9 + 17718866 TATAGAAGA
s cb4.chrX              11046006 8 + 21540570 -ataaaaaa
i cb4.chrX              C 0 I 575
s caeRem4.Crem_Contig0   2422816 8 -  4500979 -atttaaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3975996 8 +  4147112 -ATTTTTGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   217276 6 -   357190 ---aaaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    263592 23 -  1189296 I

a score=-1758.000000
s ce10.chrX              5719037 18 + 17718866 -GTCAACACCTTTTTTCAT
s caeRem4.Crem_Contig0   2422825 18 -  4500979 -attgtctgatctttttat
i caeRem4.Crem_Contig0  I 1 I 2
s caePb3.Scfld02_0       3976004 14 +  4147112 -----GCGAACATTCTCAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   217282 19 -   357190 attaattaaacatTTACCA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11046014 575 + 21540570 I
e caeSp111.Scaffold626    263592 23 -  1189296 I

a score=-2605.000000
s ce10.chrX              5719055 18 + 17718866 AGTCTTTACTTCAAAACT-
s caeRem4.Crem_Contig0   2422845 17 -  4500979 atttcgAG-TTTAACACT-
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    263615 17 -  1189296 AGTCCCTT-TTCAAAGAT-
i caeSp111.Scaffold626  I 23 I 1
s caePb3.Scfld02_0       3976018 15 +  4147112 AGTCCCTA-TCTACCG---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   217301 15 -   357190 ---CTTTT-TCGAACAATG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11046014 575 + 21540570 I

a score=268017.000000
s ce10.chrX              5719073 424 + 17718866 TACCCGAAACTCGTGTAACTGATGAAGATGCCCAAAATCAGTCAAATCGCCATTAATAATCAATGCTGCCGGCTTGTAGTCCATACTCCCAATTAATGCATCAAGAGCTTGTCGCTGCACACGATTTGCAAACCTGCTCTCCAACGTGGTAGTTGATTCCTTACCCTGCCGCACTGTTTCATTAACTTCAACCCCTGGTAGGAATTCAAGTTCCTAAAGTTT----------------------TTAT---T--CATTTG----GAATAATTATAATAATATTGTCATG-TTA---------------TTTACATTGTCCAAAAAGAAACGGGCTCTATTTTTTTTCGAAACATGTTTACACTGCACATTGTCTTGTTCACATGGGAAATGAAATTGAGTATCACCCATTAATAGGAATGTTAATATTTCTTCTGGAATTGATGTAGCTGTAGAATTATCCAGAACTTCTT
s cb4.chrX              11046589 456 + 21540570 TACCCTGAACTCGTGCAACTGATGAAGATGTCCGAAATCAGTCAAATCCCCATTGATGACGAGTGCAGCCGGCTTATAATCCAGACTGCTAATAAGAGCATCCAAAGCTTGTCTTTGTACACGATTTGCAAATCTGCTCTCTATTTTGGTACACGAATCGCGTCCCTGACGTAATGTTTCATTCACTTCGGTGCCATAGATAAATTCGAgcctctgaaaatgaaaaagaagatgcaataaaaaatgat---tagtgttcc----aaaaatctaa-------ttaggctt-aaaaaacgaaaGTAGAGGCGTACACTGTTGAGGAAGAATCGAGAACGCGGCCTTTTCGAGACCATCTTGCACTGCACATTATCCTCCTCGCACGGAAAATGGAACTGGGTGTCTCCCATGAGTAATAGAGTTAGTACATCTTTTTGGGGTGATGAAATAGCTGAGATGTTTAAACCTTCTT
i cb4.chrX              I 575 C 0
s caeRem4.Crem_Contig0   2422862 421 -  4500979 AACTCTGAACTCATGCAACTGGTGTAAATGTCCAAAATCAGTCAAATCTCCATTGATGACGAGTGCAGCTGGTTTATAATCCATACTGCTAATAAGAGCATCCAAAGCTTGTCTTTGCACACGATTCGCAAATCTGCTTTCTATTTTGGTACATGAATCCCGACCCTGACGTAGTGTTTCGTTCACTTCAACACCGTCTATGAACTCCAGTCTCTGAAAAGG----------------AAgacatgat---t----tttt----gaaagtcttt-------ttgttatt-tta---------------tttacACTGTTCAGGAAAAACCTGGATCGTGGTCTTTTTGAGACCAACTTGCACTGAACATTATCTTCTTCGCatggaaaatggaattgtGTGTCTCCCATGAGCAATAAGGTTAGAGTATCCTCTCGTATGGTTGGAAAGGTGGAATTATCTAACCCATTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    263633 422 -  1189296 TACTCTAAATTCGTGCAATTGATGAAGGTGTCCGAAATCAGTCAAATCTCCATTGATGATGAGAGCAGCTGGTTTATAATCCAGACTGCTAATAAGAGCATCCAGTGCCTGTCTTTGTACACGATTCGCAAATCTGCTTTCTATTTTAGTGCACAAATCCCTTCCCTGACGCAACGTCTCGTTCACTTCGATGCCCTCAATGAACTCAAGCCTCTGGAATgt----------------------tgaa---c----ttttcgaaaaatggatat-------ttttaatt-gaaaaa------------agtacaTTATTGAGGAAGAACCGGCTTCGTGGTCGTTTCGAAACGAGTTTGCATTGCACATTATCCTCTTCACacggaaaatgaaattgggTGTCTCCCATGAGCAAAAGGGTGAGAATATCCTCTTGAGGAGAAGATAGAGTAATATTATTCAAATCTTCTT
i caeSp111.Scaffold626  I 1 I 49
s caePb3.Scfld02_0       3976033 422 +  4147112 TACCCTGAACTCATGCAATTGATGAAGGTGTCCAAAATCAGTCAAATCTCCATTGATGATGAGAGCAGCTGGTTTATAATCCAGACTGCTAATAAGAGCATCCAACGCTTGTCTTTGTACACGATTCGCAAATCTGCTTTCTATTTTAGTACACAAATCCCTCCCTTGACGCAATGTTTCGTTCACTTGAATGCCCTCAATGAACTCGAgtctctggaaaat----------------------tggaatgc----TTCT----GAACAGATAt-------ttttaattggaaaaa------------agtacaTTATTGAGAAAGAATCGGCTCCGAGGCCGTTTTGAAACGAGTTTACATTGCACATTATCCTCCTCgcatggaaaatgaaattgggtATCTCCCATGAGCAAAAGGGTGAGAATATCATCTGGAGGAGAGGGTAGAGTAGCATTTTCCAAACCTTCTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   217316 430 -   357190 CACCCTAAACTCTTGAAGCTGGTGGTGGTGTCCAAAATCTGTCAAGTCGCCATTGATAATgagcgcagcaggcttttgGTCCAAACTACTAATAAGCAAATCTAGAGCCTGTCTTTGTACCCGGTTCGCAAATCTGCTCTCTATTCGGATGCACGATTCTTTGCCCTGGCGTAAAGTTTCGTTTACCAATGTTCCTGGCTGGAATTCGAGACGCTGAAAATA-----------GAATTAATTGCtgaa---t-caatttt----aaaaaagcac-------tgtaaaac-aaacaaacaaa-------catacATTATCGAGTTGAAAAAATGCTCGGGGTCTTTTCGAGGCGAGCTTGCATTGCACATTATCTTCTTCACAAGGAAAATGAAATTGTGTGTCGCCCATGAGCAACAATGTTAATATATCATTTGTATCCGATTTTGTGG-------AGCTAAATTGAGTT
i caeJap4.Scaffold17990 C 0 C 0

a score=833.000000
s ce10.chrX              5719497 15 + 17718866 GTGGAATTTCt-taaa
s cb4.chrX              11047045 15 + 21540570 GAAGTTCATCT-TAag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2423283 16 -  4500979 GGATATcttctataaa
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3976455 15 +  4147112 GAAGATTGTCT-GAGA
i caePb3.Scfld02_0      C 0 I 158
s caeJap4.Scaffold17990   217746 14 -   357190 --GTTACATCTGTAAA
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    264055 49 -  1189296 I

a score=-1233.000000
s ce10.chrX              5719512 7 + 17718866 -aaatgaa
s cb4.chrX              11047060 2 + 21540570 -at-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2423299 6 -  4500979 -at-tgaa
i caeRem4.Crem_Contig0  C 0 I 140
s caeJap4.Scaffold17990   217760 7 -   357190 AAT-TAAA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e caeSp111.Scaffold626    264055 49 -  1189296 I

a score=578.000000
s ce10.chrX              5719519 30 + 17718866 tttatattaaattttttaaatgtttctttt
s cb4.chrX              11047062 26 + 21540570 ttcctat----tttttggaaCGGTTTGTTT
i cb4.chrX              C 0 I 32
s caeJap4.Scaffold17990   217767 24 -   357190 TCATTAG------Cttgaaataattatttt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e caeSp111.Scaffold626    264055 49 -  1189296 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=309.000000
s ce10.chrX              5719549 8 + 17718866 ttaatttt
s caeJap4.Scaffold17990   217791 8 -   357190 tttagttt
i caeJap4.Scaffold17990 C 0 I 315
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e cb4.chrX              11047088 32 + 21540570 I
e caeSp111.Scaffold626    264055 49 -  1189296 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=0.000000
s ce10.chrX              5719557 35 + 17718866 CAGTAAACATTGAATCCAGGGCTTTTTTTTTTGAA
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e caeJap4.Scaffold17990   217799 315 -   357190 I
e cb4.chrX              11047088 32 + 21540570 I
e caeSp111.Scaffold626    264055 49 -  1189296 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=-3881.000000
s ce10.chrX              5719592 474 + 17718866 ATCTTAATTTCAAAAATCAATATCAGAATTTTTGAAACAACTTTTGAAATATGATTGAACAGTAGATCGCATCACAGTTCATTTACGGAGTTCGCATTATGCCATAGTGAGAAAAATGGGATCTTTGAGATCTGGGCAGGATGTAGAAGTGGGCATCACGAAAACG---ACAAAAATGCCTCAGAAAGTT-----------CTTCAGCCATCTCGAAACAAAATTTTTAGAAAAGTCAGAAACTTTTTTAGTAATGCCCAAAAATTTTCCAAAATCTTCAGACAGTTGTAGAAAGTTTTTTCAAAAATTTAAGAGCTTTGTTAAAAGAACTACATTAAAAGTTTTCAGACAAATGTAGAGATTTTCTTTCATGAGAGGCAGCTCGCTTTCAGGGCCTGGCCGAAACCTGCCCGGCCAAATTTGACCTCAAAACTTGAAATATCGTTCTTTGTATATATACGAAGTACATGCTTCAATCTATATTTCCA
s cb4.chrX              11047120 300 + 21540570 ATCTTGACATC---------TAataaaattactgaaa---------aagaACGATAAGATAAAAAAGAGCAACATTG-------------------------------GAAAAGAATAGG-----TGA-ATCCG-------------ACTGGACGTTTTGAGGGCGTGTGGAACAATGAct-ggaaagttttgatttcacacttctcttcttttcaaataatttataTATGAGACTAAGCAAAATTGTTGATAAAAcc--------------attcttc------------------ttttca-------------tttgcC----------------CCGTTTTGATATAAAC-----AATGTCTTCTCATCGAATG-----------------CCAATCGAACGCTGC------------GCCCCCCAAACAC----------------TAGCTATACGAA--------TTCATTCGCtttttttA
i cb4.chrX              I 32 C 0
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e caeJap4.Scaffold17990   217799 315 -   357190 I
e caeSp111.Scaffold626    264055  49 -  1189296 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=571.000000
s ce10.chrX              5720066 95 + 17718866 ACCTGTGATGGTTCCATTCTCCTGAGATATTACAGTA----GAAATGAATAAAATTGTAA--------TAAATATCGCCAGCATAATTTCTTGGCGCATGAACGAAA
s cb4.chrX              11047420 92 + 21540570 --CTGcgaattcaattttcacatgatcactttcagaaaaataaaattaaaaaaaataaaaggggCAAGTAAATTTCATTGACActa-------------gaaagaaa
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    264104 82 -  1189296 acctGTAATCGTAGTATTTTCTTGAGTTCTTATAGAA----ATAGCTAAACATAGCAATA--------TGAATAATATTAACCTCA-------------TCAGGAAA
i caeSp111.Scaffold626  I 49 I 5
e caePb3.Scfld02_0       3976470 158 +  4147112 I
e caeJap4.Scaffold17990   217799 315 -   357190 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=-6593.000000
s ce10.chrX              5720161 33 + 17718866 TGAATATTTAACTGAAAAGTGTTGAGGAAT--------AAA---------------
s cb4.chrX              11047512 33 + 21540570 -----------------------gaaaaagtacATAATAATTTATTGTTACATACC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    264191 40 -  1189296 TGAAC-------CGGGAAGTGTTGTAAATG--------AATGGATGGCCAAGCAA-
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       3976628 33 +  4147112 tgaat-------------gttttgacaAAG--------AATGGA-GGCTGGACGA-
i caePb3.Scfld02_0      I 158 C 0
e caeJap4.Scaffold17990   217799 315 -   357190 I
e caeRem4.Crem_Contig0   2423305 140 -  4500979 I

a score=20146.000000
s ce10.chrX              5720194 71 + 17718866 ATGCTTGAAAATTGTGTTTG-TTCTCGAA------ATATTTATATTAAAACGAATGGAATTTGTTGATTAAACCATCT
s cb4.chrX              11047545 60 + 21540570 ----ATCCGAATTGTGAGGA-GCctggaaagttttttttcaatataa-------------tGATTGATTGGAGCACTT
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   2423445 76 -  4500979 ACGCTTGAAAGTTGTGATTG-TTctcaaataataataatttatataaAACAGAC-AAAATTTGTTGATAAAACCACCT
i caeRem4.Crem_Contig0  I 140 C 0
s caeSp111.Scaffold626    264231 72 -  1189296 ATGcttgaaagttttgattgtttttcaaa------taatttatatGAAACCAGCGGGAATTTGTTGATAAAACCATTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3976661 71 +  4147112 Atgcttgaaagttttgatta-ttCTCAAA------TAATTTATATGAAACCAACGGAAATTTGTTGATAAAACCATCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   217799 315 -   357190 I

a score=7480.000000
s ce10.chrX              5720265 30 + 17718866 ------CTTTTCACCC-ACCCCA-CATGATATAAACAA
s caeRem4.Crem_Contig0   2423521 31 -  4500979 ------CTTTTCACTT-GCCCCGTTTTGATATAAACAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    264303 38 -  1189296 tttcactctctctcttctttctgttttgatATAAACAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3976732 37 +  4147112 CTTCATTCTTTCACTT-GGCCCGTTTTGATATAAACAa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   217799 315 -   357190 I
e cb4.chrX              11047605 33 + 21540570 I

a score=-18910.000000
s ce10.chrX              5720295 110 + 17718866 ---------------TG---------ACTTCTTCTTCTT-----------------------------CGTTGTCTTCTTTTTCTTTCTGCAC---CCCCTTCTCAAACAGCTATACGATTTATTTTTTCAGCATTGAGTTAGGA--AA-----TTGGCATCCAAGTTCAGTT
s cb4.chrX              11047638  94 + 21540570 tgtatt------ttttg--------------------------------att----------------tgggagcttttttg--tt-------------attttttgattag---------taccttttgattACTGACTTGAAAAGAGCACACTGGTTGAAAATGGTAAA-G
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   2423552 124 -  4500979 TGTCTT------CTTTGCCATCGAACACTGCCCCCCGTC------AGCTATA----------------CGAatgcattttct--tttttgcat---tcaatttccagatggc---------CAACTTCTCA-TATTGTGTTGAAATGAA-----TCGAAAAAGACAGTGAA-G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    264341 127 -  1189296 TG----------TCTTGCCATCGAACACTTTCTCCCTTC----TCAGCTATACGAAttcgttttccttcttctttattttttgctttccagatggccaccttttctgatt---------------------------ttttatgaTGAA-----TGGAATAAGATAGTGGAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3976769 135 +  4147112 tgtctcttcttttcttgccATCGAACGCTTCTACCCCCCACATGCAGCTATA----------------CGAatgcattttct-tttttcacat---ttcatttccagatggc---------caccttc----tctaattttctgatgaa-----ttgaATAAGATAGTGGATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   217799 315 -   357190 I

a score=183756.000000
s ce10.chrX              5720405 969 + 17718866  
s cb4.chrX              11047732 765 + 21540570  
i cb4.chrX              C 0 I 155
s caeRem4.Crem_Contig0   2423676 915 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    264468 972 -  1189296  
i caeSp111.Scaffold626  C 0 I 196
s caePb3.Scfld02_0       3976904 973 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   218114 957 -   357190  
i caeJap4.Scaffold17990 I 315 C 0

a score=130.000000
s ce10.chrX              5721374 3 + 17718866 TAA
s caeRem4.Crem_Contig0   2424591 1 -  4500979 --a
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   219071 3 -   357190 GAA
i caeJap4.Scaffold17990 C 0 I 244
e caePb3.Scfld02_0       3977877 0 +  4147112 C
e cb4.chrX              11048497 155 + 21540570 I
e caeSp111.Scaffold626    265440 196 -  1189296 I

a score=-1344.000000
s ce10.chrX              5721377 1 + 17718866 T---
s caeRem4.Crem_Contig0   2424592 3 -  4500979 aga-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3977877 4 +  4147112 TGAT
i caePb3.Scfld02_0      C 0 I 113
e caeJap4.Scaffold17990   219074 244 -   357190 I
e cb4.chrX              11048497 155 + 21540570 I
e caeSp111.Scaffold626    265440 196 -  1189296 I

a score=337.000000
s ce10.chrX              5721378 7 + 17718866 GTTTGTG
s caeRem4.Crem_Contig0   2424595 7 -  4500979 gctGGTG
i caeRem4.Crem_Contig0  C 0 I 143
e caePb3.Scfld02_0       3977881 113 +  4147112 I
e caeJap4.Scaffold17990   219074 244 -   357190 I
e cb4.chrX              11048497 155 + 21540570 I
e caeSp111.Scaffold626    265440 196 -  1189296 I

a score=0.000000
s ce10.chrX              5721385 582 + 17718866  
e caePb3.Scfld02_0       3977881 113 +  4147112 I
e caeJap4.Scaffold17990   219074 244 -   357190 I
e cb4.chrX              11048497 155 + 21540570 I
e caeSp111.Scaffold626    265440 196 -  1189296 I
e caeRem4.Crem_Contig0   2424602 143 -  4500979 I

a score=45.000000
s ce10.chrX              5721967 42 + 17718866 ATTCGAAAAAGGTTACTCTAATATGTTCCGATATCCCTACAG----------
s caeRem4.Crem_Contig0   2424745 51 -  4500979 ATTTCAATAAGGTCA-TCGAAAGCCGTCCGCGATgcttacaaaaaaaaacgc
i caeRem4.Crem_Contig0  I 143 C 0
e caePb3.Scfld02_0       3977881 113 +  4147112 I
e caeJap4.Scaffold17990   219074 244 -   357190 I
e cb4.chrX              11048497 155 + 21540570 I
e caeSp111.Scaffold626    265440 196 -  1189296 I

a score=1000.000000
s ce10.chrX              5722009 1 + 17718866 G
s cb4.chrX              11048652 1 + 21540570 G
i cb4.chrX              I 155 C 0
s caeRem4.Crem_Contig0   2424796 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    265636 1 -  1189296 G
i caeSp111.Scaffold626  I 196 C 0
s caePb3.Scfld02_0       3977994 1 +  4147112 G
i caePb3.Scfld02_0      I 113 C 0
e caeJap4.Scaffold17990   219074 244 -   357190 I

a score=88455.000000
s ce10.chrX              5722010  99 + 17718866 GGTAGAC----ATTGG----AAAAAAGTGTATCAAGCAAAAAGTATATGCATGCATAATAGAAAAG--CCCGTGTCACATTGAAAATTCAATAGAGCGAAAAGCTGGG--------C
s cb4.chrX              11048653 102 + 21540570 GGTAGACGGGAAAGGG-AAAAAATGTATGTATGAGGCAGAAA----AAGTATGCATAATGAAGGAG--CCCGTGtcacattgaaaattcaatagaGCGAGAAGCTGGG--------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2424797 105 -  4500979 ggTAGAC----ATGgg-acaaaaaaaatgtatcaGGCAAAAAGTATATGTATGCATAATAAAGAAG--CCCGTGTcacattgaaaattcaatagaGCGAAAAGCTGGACT-----CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    265637 106 -  1189296 Ggtaaaa----ctgag-----aaaaaatctATCAGGCAAAAAGTATATGTATGCATAATAAAGAAG--CCCGTGTcacattgaaaattcaatagaGCGAAAAGCTGGACTCCGAAGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3977995 105 +  4147112 GGTAGac----atgag---gaaaaaaatgtatcagGCAAAAAGTATATGTATGCATAATAAAGAAG--CCCGTGtcacattgaaaattcaatagagCGAAAAGCTGGGCTCC---CC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   219318 105 -   357190 GGCAGAc----atgaagaaagaaaaaatgtatctGGCAAAAAGCATATGTATGCATAATAAAAGAGCCCCCGTGTCACattgaaaattcaataaagCGAAAAGCTGGTC--------
i caeJap4.Scaffold17990 I 244 I 38

a score=-1382.000000
s ce10.chrX              5722109 4 + 17718866 AACG-
s cb4.chrX              11048755 4 + 21540570 gaca-
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig0   2424902 4 -  4500979 GACA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    265743 5 -  1189296 GGAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3978100 5 +  4147112 GACAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   219423 38 -   357190 I

a score=12.000000
s ce10.chrX              5722113 23 + 17718866 -GGTGGAAAGTCCCAGTTTTGTTT
s caeRem4.Crem_Contig0   2424906 16 -  4500979 GCAGGGAGAACCC--------TTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    265748 18 -  1189296 -AGAGGAGAACCCC-----cgctt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3978105 12 +  4147112 -AGAGGAGAACCC-----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   219423 38 -   357190 I
e cb4.chrX              11048759 59 + 21540570 I

a score=5553.000000
s ce10.chrX              5722136 26 + 17718866 TGTTTTTAAAG--AATTAAGCAAGAACT
s caeRem4.Crem_Contig0   2424922 26 -  4500979 CTATTTCAACA--AATCaaccaaaaatg
i caeRem4.Crem_Contig0  C 0 I 68
s caeSp111.Scaffold626    265766 28 -  1189296 cttttccaaaaggaatcaaccaaaaaag
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3978117 26 +  4147112 TTTTTCCAACA--AATCAaccaaaaagg
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17990   219461 25 -   357190 -tgtttggaaa--aggaaaggaaaggac
i caeJap4.Scaffold17990 I 38 C 0
e cb4.chrX              11048759 59 + 21540570 I

a score=0.000000
s ce10.chrX              5722162 4 + 17718866 AAAA
e caePb3.Scfld02_0       3978143 4 +  4147112 I
e caeJap4.Scaffold17990   219486 0 -   357190 C
e cb4.chrX              11048759 59 + 21540570 I
e caeSp111.Scaffold626    265794 4 -  1189296 I
e caeRem4.Crem_Contig0   2424948 68 -  4500979 I

a score=-16463.000000
s ce10.chrX              5722166 49 + 17718866 CCTCTATCTTA---------------ACTCTGAGTTCTAAACA--CGCT-------------------AACAT---CGAAT--------TTTCAGT
s cb4.chrX              11048818 82 + 21540570 CCCCTCTTcaaacaaatcaaccaaaaaacatgagtttcaaaaa--agcc------------aaacacaaaaaactttgaaggtAGAGATTTTCATT
i cb4.chrX              I 59 I 15
s caeSp111.Scaffold626    265798 78 -  1189296 ----------gataga-----aaaatagtcTGAATTCTATAGAGAAGCTGGGGGCATAGATgaatgtgaaaaa---tgaatgtgaTTGGATTCTAT
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3978147 66 +  4147112 ----------g---------------tgtTTGAATTCTATAAAG-AGTTGGAtagaaaga-gaacaaaaaaaa---tgaatgtgatTGGATTCTCT
i caePb3.Scfld02_0      I 4 I 1
s caeJap4.Scaffold17990   219486 28 -   357190 --------------------------------AGATATGTACA--TGCT------------AACTACCCAAAC---T-------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2424948 68 -  4500979 I

a score=103283.000000
s ce10.chrX              5722215 418 + 17718866  
s cb4.chrX              11048915 643 + 21540570  
i cb4.chrX              I 15 I 27
s caeRem4.Crem_Contig0   2425016 531 -  4500979  
i caeRem4.Crem_Contig0  I 68 I 101
s caeSp111.Scaffold626    265876 565 -  1189296  
i caeSp111.Scaffold626  C 0 I 11
s caePb3.Scfld02_0       3978214 604 +  4147112  
i caePb3.Scfld02_0      I 1 I 19
s caeJap4.Scaffold17990   219514 546 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=217212.000000
s ce10.chrX              5722633 217 + 17718866 GTTTACTAACCTTTTGTTGATGAGCCGCATTAGGCCCGTCATGC------TGCAAATGTGCGTGCTTGTTACGTTCAGACTCGTTAGGAATCTCGCAATACGAGATATCACCGTTCTGATGGAATGGAAAGTTGTTTTGCTCGTAGATCGTGCTCGGCAACTGAGACAGAATTGGATCTCGTGGCGGTAGGCTTACTTTTCCCGCGTTTACTCGATCTGAAA-A
s cb4.chrX              11049585 216 + 21540570 GCTCACTAACCTTTTGTTGATGCGCTGCATTTTGTGCGTCACCG------TGAAGATGAGCGTGCTTGTTACGTTCCGACTCGGATGGGATCTCGCAATACGAGATATCACCGTTCTGATGGAATGGAAAGTTGTTTTGCTCGTAAATCGTGCTTGGCAGTTGAGCGAGAATTGGATCTCGTGGTGGAAGGCTCACTTTTCCAGAGTTTACTCgatctggaa--
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   2425648 217 -  4500979 GCTCACTAACCTTTTGTTGATGCGCCGTATTTTGTGCGTCACCG------TGAAGATGAGCATGCTTGTTACGTTCCGATTCGCTTGGAATCTCACAATACGAAATATCACCATTTTGATGGAATGGGAAATTGTTTTGCTCGTATATGGTACTGGGAAGTTGAGAGAGAATAGGATCTCTTGGTGGTAGACTCATCTTTCCAGCATTCACAcgatctgaaac-
i caeRem4.Crem_Contig0  I 101 C 0
s caeSp111.Scaffold626    266452 223 -  1189296 GATCACTAACCTTTTGTTGATGCGTTGTATTCTGTGCATCGCCGTGATGTTGAAGATGAGCGTGTTTATTACGTTCCGACTCGGTCGGTATCTCGCAATATGAGATGTCACCGTTCTGATGGAACGGAAAGTTGTTTTGCTCGTAGATGGTGCTGGGAAGCTGAGAAAGAATCGGATCTCGTGGCGGCAGGCTCATTTTTCCAGCATTGACACGATCTGAAG-A
i caeSp111.Scaffold626  I 11 I 29
s caePb3.Scfld02_0       3978837 223 +  4147112 GCTTACTAACCTTTTGTTGATGCGCCGTATTCTGTGCGTCACCGTGATGTTGAAGATGAGCATGCTTGTTACGTTCCGACTCGGTTGGAATCTCGCAATATGAGATATCACCGTTTTGATGGAACGGAAAGTTGTTTTGCTCGTAGATTGTGCTGGGAAGTTGAGACAGAATTGGATCTCGGGGAGGTAGACTCATTTTTCCAGCGTTCACTCGatctgaat-a
i caePb3.Scfld02_0      I 19 C 0
s caeJap4.Scaffold17990   220060 223 -   357190 GCTCACTAACCTTTTGTTGATGTGCGGCGCTTTGTGCGTCACCATGATGCTGAAGATGAGCATGCTTGTTGCGTTCCGACTCGGTCGGAATCTCACAATACGAGATGTCGCCGTTTTGGTGGAATGGAAAGCTGTTTTGCTCGTAGATGGTGCTGGGTTGTTGCGAGAGAATCGGGTCTCGTGGCGGGAGACTTGTCTTCCCGGCGCTCACGCGATCTGACA-A
i caeJap4.Scaffold17990 C 0 C 0

a score=-443.000000
s ce10.chrX              5722850 3 + 17718866 -AAA
s cb4.chrX              11049801 3 + 21540570 -aat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2425865 3 -  4500979 -aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   220283 3 -   357190 TAA-
i caeJap4.Scaffold17990 C 0 I 44
e caePb3.Scfld02_0       3979060 0 +  4147112 C
e caeSp111.Scaffold626    266675 29 -  1189296 I

a score=1061.000000
s ce10.chrX              5722853 10 + 17718866 TATTTTGCGT
s cb4.chrX              11049804 10 + 21540570 tatttaCAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2425868 10 -  4500979 aactttgtGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3979060 10 +  4147112 acttttgaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   220286 44 -   357190 I
e caeSp111.Scaffold626    266675 29 -  1189296 I

a score=-502.000000
s ce10.chrX              5722863 10 + 17718866 GTTTTTTCTT---
s cb4.chrX              11049814 10 + 21540570 TATTTGTCTT---
i cb4.chrX              C 0 I 16
s caePb3.Scfld02_0       3979070 12 +  4147112 -gCTCATTTTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   220286 44 -   357190 I
e caeSp111.Scaffold626    266675 29 -  1189296 I
e caeRem4.Crem_Contig0   2425878  0 -  4500979 C

a score=191.000000
s ce10.chrX              5722873 13 + 17718866 ACTAGGAAAGAAT
s caePb3.Scfld02_0       3979082 13 +  4147112 ATCATACAACAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   220286 44 -   357190 I
e cb4.chrX              11049824 16 + 21540570 I
e caeSp111.Scaffold626    266675 29 -  1189296 I
e caeRem4.Crem_Contig0   2425878  0 -  4500979 C

a score=0.000000
s ce10.chrX              5722886 548 + 17718866  
e caePb3.Scfld02_0       3979095   0 +  4147112 C
e caeJap4.Scaffold17990   220286  44 -   357190 I
e cb4.chrX              11049824  16 + 21540570 I
e caeSp111.Scaffold626    266675  29 -  1189296 I
e caeRem4.Crem_Contig0   2425878   0 -  4500979 C

a score=966.000000
s ce10.chrX              5723434 13 + 17718866 CTCTTTCATTGTT
s caeRem4.Crem_Contig0   2425878 13 -  4500979 CTTTCTCATTGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3979095  0 +  4147112 C
e caeJap4.Scaffold17990   220286 44 -   357190 I
e cb4.chrX              11049824 16 + 21540570 I
e caeSp111.Scaffold626    266675 29 -  1189296 I

a score=76.000000
s ce10.chrX              5723447 2 + 17718866 CC
s cb4.chrX              11049840 2 + 21540570 cc
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2425891 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3979095 0 +  4147112 C
e caeJap4.Scaffold17990   220286 44 -   357190 I
e caeSp111.Scaffold626    266675 29 -  1189296 I

a score=-984.000000
s ce10.chrX              5723449 6 + 17718866 CTATCA
s cb4.chrX              11049842 6 + 21540570 cccccg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2425893 6 -  4500979 AAAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    266704 6 -  1189296 CTAGAA
i caeSp111.Scaffold626  I 29 C 0
e caePb3.Scfld02_0       3979095 0 +  4147112 C
e caeJap4.Scaffold17990   220286 44 -   357190 I

a score=1000.000000
s ce10.chrX              5723455 1 + 17718866 C
s cb4.chrX              11049848 1 + 21540570 c
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2425899 1 -  4500979 C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    266710 1 -  1189296 C
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   220330 1 -   357190 C
i caeJap4.Scaffold17990 I 44 C 0
e caePb3.Scfld02_0       3979095 0 +  4147112 C

a score=180349.000000
s ce10.chrX              5723456 295 + 17718866 TTACCACTATATTGAGCTTCTGACATAACTGTCAAACATTTTTGCGACACTTGTCCAACAGCACAAGACCGTTTAACTTGCTCCAAAGAACCATTTAAAACTATTCGTGTTACTTGAGGGTCTAGCGTATACTTGTGAAGTAACGGTCTTAATACTGCTCCCGTCGATAAAGAGTGTCGAGCACGAATGCAGACCAATCTGGAAAA-AAAAAGGCATTTCCT---GCAAAGTGCAACCGGAAATCGTCTAGATGAAAATG----GAAATGCTAAAAAAATCC----------GGAAACTAGTTCTATTTGGGA
s cb4.chrX              11049849 288 + 21540570 ttACCATTATATTGTGCCTCCGACATCACTGTTAAACATTTCTGAGAAACAGCACCAACACTACAGGATCTTTTCACTAGTTCCAATGTCCCATTCAACACTATCCTGGTTACTTGCGGGTCTAACGTGTATTTATTGAGTAACGGCCTTAGTACAATGCCCGTTGATAACGAGTGTCGGGCACGAATGCAGACCAGtctgaaaactcaa-------tttgGTGAGAAAAGTGCAAACGGAAATTGTCTAGATGGGGTGG----TAAATGC----AAATTCC----------GAAAACGTTTTCTATTTGGAA
i cb4.chrX              C 0 I 22
s caeRem4.Crem_Contig0   2425900 285 -  4500979 AAACCATTGTACTGTGCTTCAGACATGACAGTCAAACATTTCTGAGAGACTGCTCCAACAACACAGGAACGTTTCACTTGTTCCAATGACCCATTTAAAACTATCCTAGTCACTTGTGGATCTAATGTATATTTGTGGAGTAGCGGTCGTAACACCACTCCAGTTGACAGTGAGTGTCGGGCGCGAATGCAAACCAATCTGAAATC-CAA-------TTTAG---AAAAAGTGCAACCGGAAATTGTCTagatggaaatg----aaaatgc---aaaaatcc----------GGAAACGTTTTCTATTTGGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    266711 288 -  1189296 TAACCATTGAACTGTGCTTCTGACATCACTGTCAAACATTTTTGTGAAACTTGTCCAACAGCACAAGATCGTTTCACTTGTTCCAAAGAACCATTTAAAACTATCCTAGTAACTTGGGGATCTAATGTATATTTATGAAGTAATGGACGTAACACTGCACCCGTCGATAAAGAATGTCGAGCTCGTATACAGAccaatctgaaatt-gaa-------ttgtg---AACT-GTGCATTCAGAAGTTTCCTAGATGgtaaaacaatgaaattc---aaaactct----------GGAAACGTTTTTCCAATATAG
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       3979095 299 +  4147112 TTACCATTGTATTGTGCTTCAGACATAACTGTTAGACACTTCTGGGATACTTGACCAACAGCACAGGACCGTTTAACCTGCTCCAATGAACCATTCAAAACTATTCTAGTAACTTGTGGATCTAATGTGTATTTATGTAATAACGGTCGTAATACTGCCCCGGTGGATAATGAGTGTCGAGCTCGAATGCAGACCAATCTGAAATC-AAG-------TTTCC---AAATAGtgcattttgaaattggcTAAATGGAAGGGGaatgaaatgc---aaaaatcttcaagaatCCGGAAAAGCTTTCCTATTGGAG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   220331 252 -   357190 TTACCATTATACTGCGCCTCCGACATCACTGTCAAGCACTTTTGAGAAATGGCGCCAACTGTACACGATCGCTTCACCTGCTCCAGAGAACCGTTTAACACAATTTTCGTGATTTGAGGATCTATCGTATACTTGGCTAAAAGTGGTCGGAGAACTGCTCCAGTTGACAAGGAATGTCGGGCTCGAACGCATACCAATctggaa---aga---------------aaaaagtggaacAATGA------TGGAAGAAAAGG----GCAGCTC-----TAGTCT----------CGA------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-2021.000000
s ce10.chrX              5723751 10 + 17718866 GTTTTTTTTC
s caeRem4.Crem_Contig0   2426185  5 -  4500979 -----TATCC
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       3979394  5 +  4147112 -----TATCC
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17990   220583  5 -   357190 ---TGAAT--
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11050137 22 + 21540570 I
e caeSp111.Scaffold626    266999  4 -  1189296 I

a score=19133.000000
s ce10.chrX              5723761 153 + 17718866 GTTGATCTTGTATTTCCCTTTCGAAA-----AAGGCGGTG--GAATTTAATTTCTAACAAGGTTCTATGATCATGCT-------CAATGTAATACTTAAAATTGAAAAATAAAATGAAC---GGCGCG-CAAGG-------AAGGGGAAATTGGGTGGATGATTATATTAGATTACCG
s cb4.chrX              11050159 133 + 21540570 GTTAATCTGAT-------TTAAAGAG-----GGGA------TGGATGTA----CTAACAAGGTTTT---TGCATGCT-------GAGagt----------aatgaaaaatgagattaaATGGAACgcg-caaaattttttcgtccGCTATGGGAG--AGTAATTTGATTTGATTACCG
i cb4.chrX              I 22 I 21
s caeRem4.Crem_Contig0   2426199 134 -  4500979 GTCAATCTCAT-------TTTCCGAA-----GGGAAGGTGGTGGATGTA----CTAACAAGGTTCTAAATGCATGCT-------AAG-------------AAAGAAACATGAGATTAAATTGAACGCG-CAAAATGTCT--ATTCGGGAAAAGGG--GGTA---TTATCGCATTACCG
i caeRem4.Crem_Contig0  I 9 I 7
s caeSp111.Scaffold626    267003 142 -  1189296 GTGAATCTTGT-------TTGTAAAAAGATGGGGGGAGTGGCAGTTGGAATATCTAACAAGGTTCTATATGCATgct---------------------------caaaatgaaatcaaattggACGCGCCAAAATTTCT--ATTTGGGTTGGAGGGGGGTGTTTTTACTCGATTACCG
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3979408 145 +  4147112 GTtaatcttat-------tttcaaaaa----gggaAGGTGGTGGATGTA----CTAACAAGGTTCTATGTACATGctacaaaaagagaa-----------aaagaagaatggaatcAAATTGAACGCGCCAAAATTTCT--ATTCGGGTAGGAGG-----GTTTTTATTAGATTACCG
i caePb3.Scfld02_0      I 9 C 0
s caeJap4.Scaffold17990   220588 112 -   357190 GTTAattttgtcttcttttttca--------gggaaattaataaaaatg----ctaACAAGGTGGGATTGACATGCT---------------------------CAAAGTAAAAATAAG---GACACG-------------TTTTGGAGAAAAAC--TATG---------TATTGCCT
i caeJap4.Scaffold17990 C 0 C 0

a score=2364.000000
s ce10.chrX              5723914 42 + 17718866 AACACCACACAATCGTATTCTTCCCAGAAAACGAAAACGTGT
s caeRem4.Crem_Contig0   2426340 24 -  4500979 --------ACAACCataatctttg---aaaattga-------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    267145 31 -  1189296 GGTACCG-ACAAACATAATCttcc---aaaattga-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3979553 31 +  4147112 CGTACCG-ACAACCATaatcttcc---aaaattga-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   220700 24 -   357190 ----------AATTACCAAGTTCGCA-AAATTTGA-------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11050292 21 + 21540570 I

a score=11408.000000
s ce10.chrX              5723956 11 + 17718866 AACAGCTGTAA
s cb4.chrX              11050313 11 + 21540570 AACAGCTGGAA
i cb4.chrX              I 21 I 10
s caeRem4.Crem_Contig0   2426364 11 -  4500979 aacagctGTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    267176 11 -  1189296 aacagCTGGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3979584 11 +  4147112 aacagcTGGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   220724 11 -   357190 ACCACCTGAAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-3943.000000
s ce10.chrX              5723967 13 + 17718866 -TATTC--TAAATTTC
s caeRem4.Crem_Contig0   2426375  6 -  4500979 ----------GGTTTG
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold626    267187  8 -  1189296 --------TGTGTGTG
i caeSp111.Scaffold626  C 0 I 36
s caePb3.Scfld02_0       3979595  8 +  4147112 --------TACGTTTG
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17990   220735 15 -   357190 CTCTTCAATtcgttt-
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11050324 10 + 21540570 I

a score=-1528.000000
s ce10.chrX              5723980 3 + 17718866 A---TT-
s caePb3.Scfld02_0       3979611 6 +  4147112 GAATCT-
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17990   220750 3 -   357190 ----gta
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11050324 10 + 21540570 I
e caeSp111.Scaffold626    267195 36 -  1189296 I
e caeRem4.Crem_Contig0   2426381 9 -  4500979 I

a score=-6661.000000
s ce10.chrX              5723983 32 + 17718866 ACTTGCCAATATTAGAAAATTGAAAATTGAAT
s cb4.chrX              11050334 31 + 21540570 -ATTTGCTACTAATGAGTATACCACATTGATA
i cb4.chrX              I 10 I 3
s caeRem4.Crem_Contig0   2426390 31 -  4500979 -GACGACAATAGAGAAACAGAACCCGTttatt
i caeRem4.Crem_Contig0  I 9 I 3
s caePb3.Scfld02_0       3979617 28 +  4147112 ---TCTCGGAAGTTTCATATAACTAGTTCAT-
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   220753 30 -   357190 --ttttttttaaattaaaaaaaaaaattaatt
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    267195 36 -  1189296 I

a score=255475.000000
s ce10.chrX              5724015 268 + 17718866 AAAAACATTGTGACGGA----------AATGAAACTCACTTTGTTGGCGTTGACGCTGGATTTTTGAACGAAAAGTTGGCGGGCAGAAATTCGATGATGAACGAGACGACAGGAACAAGTCGGAGTGCACGGGATTGTAGCGCGTCGATTGCCTGTCTGGCTGGATCAATAGTGCTTCCAGTCTCGGCGTCTACAACCTCGACGTGCATCCGATCCATTCCCTGTGCATCCGCCATTTCTTGCGTCCATCGACGAACCGACATTGTCTG-AAAA----AATTA
s cb4.chrX              11050368 269 + 21540570 AACAATGAAAATACGCT----------AGCAAAACTCACTTTGTTGGTGTTGAGGccggatttttgaatgaaaaattggcagGCAAGAATTCAATAATGAACGAGACAACAGGAACGAGCCGGAGTGCACGCGATTGTAGTGCGTCGATGGCTTGCCTAGCTGGATCTATAGTGCTGCCCGTCTCCGCATCCACAACCTCCACGTGCATCCGATCCATTCCTTGTTGGTCCGCCATTTCTTGCGTCCATCGACGAACCGacattgtctgaaaat----aatta
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2426424 263 -  4500979 cagaaaaaaacaacgat---------------CACTCACTTGGTTGGCGTTGAAGCGGGATTTTTGAACGAGAAATTGGCGGGCAAAAATTCGATAATGAACGAAACCACAGGAACGAGCCGGAGTGCACGAGATTGTAGTGCGTCGATGGCTTGTCTAGCTGGATCTATTGTACTACCCGTCTCAGCATCTACAACCTCTACATGCATCCGATCCATTCCTTGGGTGTCCGCCATTTCCTGCGTCCATCGACGAACCGACATTGtctg-aaat----aatta
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    267231 259 -  1189296 AAACACcacaaaa-------------------aacttacttgGTCGGCGTTGAGGCTGgatttttgaacgaaaagTTGGCGGGCAAGAATTCAATGATGAACGAAACCACAGGAACGAGCCGGAGTGCACGAGATTGTAGAGCGTCGATGGCTTGTCTAGCTGGATCTATGGTACTACCCGTCTCCGCATCTACAACCTCGACGTGCATCCGATCCATTCCTTGTGTGTCCGCCATCTCTTGCGTCCATCGACGAACCGACATTGTCTG-AAAG----AATTA
i caeSp111.Scaffold626  I 36 C 0
s caePb3.Scfld02_0       3979647 264 +  4147112 GAACAACAGAAAAC------------------AACTTACTTGGACGGCGTTGAAGCTGGATTCTTGAATGAGAAATTGGCAGGCAAGAATTCAATAATGAAAGATACTACAGGAACGAGCCGAAGTGCACGCGATTGTAGAGCATCGATGGCTTGTCTAGCTGGATCTATGGTACTACCAGTCTCCGCATCTACAACCTCAACGTGCATCCGATCCATTCCTTGAGTATCCGCCATTTCTTGCGTCCATCGACGAACCGACATTGTCTG-AAAGATAAAATTG
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   220783 271 -   357190 -------tcaaatcTATTTTTGTTCAAGTTCACACTCACTTTGTCGGCGTGGACGCTGGATTCTTAAACGAGAAGTTGGCTGGCAAAAACTCGATAATAAACGAGACCACGGGAACAAGCCGCAGGGCTCGGGATTGCAAAGCGTCAATGGCCTGTCTAGCCGGATCGATGGTGCTTCCAGTCTCGGCATCCACCACTTCCACGTGCATCCGATCCATTCCCTGTGTGTCTGCCATTTCTTGCGTCCATCGACGTACCGACATGGTCTG-AAGA----AGATA
i caeJap4.Scaffold17990 C 0 I 1617

a score=48.000000
s ce10.chrX              5724283 2 + 17718866 TT
s cb4.chrX              11050637 2 + 21540570 ca
i cb4.chrX              C 0 I 1203
s caeRem4.Crem_Contig0   2426687 2 -  4500979 ta
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold626    267490 2 -  1189296 TT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3979911 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   221054 1617 -   357190 I

a score=-53991.000000
s ce10.chrX              5724285 214 + 17718866 --------TCATTTTTCTTTA-AAAGGAAATCCCTTTTTAG-------------------------ATTTAGTTTTATTATAG--------------------------------------TTCTACGTTCCGTTTTCACCGCGAGTT--------------TTGAACTAACACAAAAAAGGAAATTTGTTCAAGCT--TGAATT-----------GTTTCATGCACTTC---------------------------------ATCAACTTCACACTTTTTGAAAGTGTTGAA--------AGTTTCGAATTTTTTGCCCACCAAAGAAGCGGTAAATTTAAATTAAAGGTGGA------------------------------------------------------------------------------------
s caeRem4.Crem_Contig0   2426720 318 -  4500979 --------TAGTTTTTTATTGTGAGTTCTGTAATCTAGGAATTGTTAGTATATTAGTGTACGATGTGTTTCTTTTCTATATAATTCATTTTAACTGATGTTCATTAATTCGTCCCTTCCATTTCTTTGTATCATCTCCATCCAAACCCGTAGTGGAAGTCGATCAAACCACTAAGAACCCTAAAGCTCATTCAGGCT--TCAATT------------TTCCGTGcactctattt-----------------------------tttaaat----attcatcTACATTATTGTG-----CTCTTCTcccttttcacttttccccGTTTCCCTATCGGATGTGCA-CAGAACAAAGCGAACGttgaacaa------------------------------aagaaaatggc-----------------------------
i caeRem4.Crem_Contig0  I 31 C 0
s caeSp111.Scaffold626    267492  37 -  1189296 CTTT----TAATTTCTCATAG-------------TTCGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATT----------------------------------------------------------TATAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3979913 338 +  4147112 GATTAAAATAATTTCACAAAG-AAAATATCTGACCTCGCAA------------------------------GTTTCTAGAAAG-----------------------------------------------------------AAAgac--agaagaaacaaaatgaacgtGCGGTAA----GAGGGCCGTGAAAAATagttaattgaaaacttgCGGGGTCAGATACTTTCTTTGCTAGAAACATGAGTTCCTATAGTGCTACTGTAATTT---ATCCCTCTCAATTAGTGATGAAACCTAAATTCCCCATCCCCTCATTCCCATCTAGCGGGCAAATTTGCA-TACGGgtgttctattttcattcaaattcattcttctccttttccaacCTGTGCTaaaaaaaTGTCCCATTTACCCAGGTTAAATTAGGAACGAA
i caePb3.Scfld02_0      C 0 I 80
e caeJap4.Scaffold17990   221054 1617 -   357190 I
e cb4.chrX              11050639 1203 + 21540570 I

a score=-6324.000000
s ce10.chrX              5724499 94 + 17718866 GTACGGCCTGTTGGGAAATGCAATATGGAACT----GTTT-----------------TTAAATATTTCTGCATAGGTTACCTTCAAAACGAGTGTTTTGGGGGTGAATTA-----------TTGCG
s caeRem4.Crem_Contig0   2427038 94 -  4500979 -----------------ATCCTCCAT---ATTCAAAGTTTCTCAagtgaaatgaaaacgaaatgtcACT-CGTGGGTGCC-----------TGAATATGATGGAAACCAAGGATTTGAACGTTGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    267529 46 -  1189296 -----------------------------ATT----GTTT-----------------TAATATGCTTCC-CATAGATA-------------TTGATTTATTGGTGAATTA----------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3980251 80 +  4147112 I
e caeJap4.Scaffold17990   221054 1617 -   357190 I
e cb4.chrX              11050639 1203 + 21540570 I

a score=-3161.000000
s ce10.chrX              5724593 43 + 17718866 GGAAAGTTTAATTTCCGACATGCTCCTAATTTTCACGGGGACT------------
s caeRem4.Crem_Contig0   2427132 36 -  4500979 --AATAAGCATATTCTATTAGGTGCACAATT-----GGCAACT------------
i caeRem4.Crem_Contig0  C 0 I 24
s caePb3.Scfld02_0       3980331 41 +  4147112 ------tgaaaattcaatta---tccCGATT-----TAGAATCATCCTTGAGAAT
i caePb3.Scfld02_0      I 80 I 4
e caeJap4.Scaffold17990   221054 1617 -   357190 I
e cb4.chrX              11050639 1203 + 21540570 I
e caeSp111.Scaffold626    267575  0 -  1189296 C

a score=-5328.000000
s ce10.chrX              5724636 38 + 17718866 GATCAAAATCCAATACCGCCGC---TATTCGTCCATTTTGC
s cb4.chrX              11051842 24 + 21540570 GATCAAAA-----------------CTCAAATCCACCATCA
i cb4.chrX              I 1203 C 0
s caeRem4.Crem_Contig0   2427192 41 -  4500979 GTTCAAAAAAGATGGGAGACTTTTCCtttgatctctttttt
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold626    267575 10 -  1189296 --------------------------TTTAATCTAT-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3980376 38 +  4147112 AATCGAAATTCACCACTAAAcc---ttttcatctctttttc
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17990   221054 1617 -   357190 I

a score=82237.000000
s ce10.chrX              5724674 174 + 17718866 C---------------CGTTTTTGCATGGCGCGCTTC--------GGCGCCGATGTATTCAATTTCCCTAATTAAATTCCA---CAACCACCAGCATCCCCTTAACTCCCCGGAGGCGTCGTAAAAGTTGGGGCGGCCCATCCTTT--TGCACAAACAACA-----------------------CTCGTGTACGTGAGTACAGATATCTGCA--CATATTAATAAAC----------------
s cb4.chrX              11051866 171 + 21540570 T---------------CCATTTTGTCCGGTGCAATGTCGCTGGGCGCCGACGACGCattcaattttcctaattAAATTCCACGCCAGCCACCAGTAAACCCTTAACTCCCCGGAGGCGTCGTAAAAGTTTGT----CCTTCCTTTTGCTCCTCAAATAACG-----------------------C----GAATGTCGGTACA--------CA--CACATTAATGAAC----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2427233 183 -  4500979 tgtgcTCTTCCTTAACCTTTTTTGTCCGAGTCGA-----------GACGACAACGCATTCAATTTCCCTAATTAAATTCTA---CCACCACCAGTAACCCCTTAACTCCCCGGAGGCGTCGTAAAAGTTGGG---ACCTTCCTTTT--TGCTCAAATAACA-----------------------CTAAAGGATGTGGGCACACACATCCGCA--CACATTAATGAAC----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    267585 161 -  1189296 ----------------CTGTTTTTTGTGCATTTT-----------AAATTTATCGTATCCAATTTCCCTAATTAAA----------GCATCCAGTAACCGTTTAACTCCCCGGAGGCGTCGTAAAAGTTGGG----CTTCCCTTTT--TGCCAAAATAACA-----------------------TAAATGTGTATGGGTACACACATCCGCACGCACATTAATGAAC----------------
i caeSp111.Scaffold626  C 0 I 93
s caePb3.Scfld02_0       3980414 191 +  4147112 c-------------tccttttttttgtgcttctc-----------GGCGTCGTCGCATTCAATTTCCCTAATTAAATTCCA---CCACTACCAGTAACCCCTTAACTCCCCGGAGGCGTCGTAAAAGTTGGG----CCTTCC-TTT--TGCTCAAATAACACTAGGGATGGATatatatgtgtgtgtgtgtgtgcgaGTACACATATCCGCA--CACATTAATGAAC----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   222671 159 -   357190 ----------------CCGTTTTTCGCTCTGC-------------GTCGCCG-CGCATTCAATTTCCCTAATTAAATTCCA------CCACTAGTAACC-CTTAACTCCCCGGAGGCGTCGTAAAAGTTTGG--------TCCATT--TGCACAAATAACA-----------------------C---TGCGC-TGGGCGCA--------TG--CACATTAATGAATGTTCTGctccaaaaaa
i caeJap4.Scaffold17990 I 1617 C 0

a score=-11777.000000
s ce10.chrX              5724848 73 + 17718866 ACATACAAAAACTAAAACCAAGCA-CTGAAAGA----CAAAAAC-----------ATGCGTTCATGTATATATAT-------------------TTCATTTCCC-----CTCT
s cb4.chrX              11052037 74 + 21540570 ---------TTTTGGAGCATAGCAGTAGCAAAA----TTGAAATCCGCCACGGTTcgctcttcctcttttttc---------------------tcaatttccc-----ctgt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2427416 78 -  4500979 ---------TTCTGGACCAAAGca-cacaaaaa----ctgaaat-cgcttttttcatatcttcttcttttttca--------------------tttacttCCCGGACTATGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3980605 83 +  4147112 ---------TTCTGCACCAGAGCA-CAC--AAT----CTGAAAC-gg--------atatcttcttttttttttattccagactTGATTCTGACGCTGATTTCCT-----CTCA
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17990   222830 49 -   357190 ----------atagaagagaaGTG-TGAAGAAAGTATTTAAAAG-TG-----------------------------------------------ACGAGACCCC-----CTGT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    267746 93 -  1189296 I

a score=43122.000000
s ce10.chrX              5724921 245 + 17718866 ATCAAAATTGAGAGC------------AAACA-------CCTTTCTCG--------GCGAAAAGTATAATTTTCCTCTTTTTTTCTCGTTCTGAGAA---------GCCATCCTTGAGG-------CAACATCATAAATTCTCGATGAAGTTT-TTTAAGCTAAGAGGCG--AGAGAAAAAG-AAAAGAAGAGAAGC-CGGTGCA-GGCGACGCGTATTTCCGGAAATGTTTTATGGTGAA---------------AACGCGAAGGCTTCTAC-------------TACT-TGGACACTAATTGGGACCCTTAGTT---------------------TTTTTTC
s cb4.chrX              11052111 241 + 21540570 ------tcaaaaaaa----------------tttaatagcCATCACCTTCTGTGA-GCTTGTAGTGCA-------TGCCCTTCT--------------------------------------------ACATCATAAATTCTTGATGAAGAG--GGCGAAGTGAGAAAAAACAGcgtaaaag-aa---gaagaagac-tttTGCG-AGCAACGC-CCAATCCGGAAATGTTTTATTGAGAAG--------------ACAGCACAGGCTTCTTTAGGGTTG-----ATGCT-ATTCCACTAATTGGGACCCTTAGCGCTTCCCCcacttcttctctctttttttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2427494 269 -  4500979 ------TCAAAAAGGGGAAGTGTTTAAAAGCTTTCATAACATTTACCTCGTCTG--GCCAAAAGTGCA-----CTTCTCCTTCCCTG----GGAAAAAATCGTTT-GCCACCCCTGGAG-------CAACATCATAAATTCTCGATGAAGTTTCGtagagatgagaaaaa--aggggaaacg-a-----aaaaaGGC-TTGTGCG-AGTAACGT-CCTATTGAGAAGTATTTTATTGAGAAGGC------------GCGGAGAAGGCTTCTACAAAACTG-----ATGCT-AGTACACTAATTGGGACCCTTAGCG---------------------GTTTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    267839 272 -  1189296 AGCAAAGCAGAGAAC---------CAGACGTTTTC----CCATTATCGAGTCTAACGTTAAAAGTGCA-----CGTCTCCTTTCCTGGTGGGAAGAAAATAGTTTCGCCACCCTCGGAG-------CAGCATCATAAATTCTCGATGAAGTT--TCAAAGCCGAGAGGCG--AGAGAAACGGCG-----AAAGAGACTTTGCGCGAGGCAACGT-CCTGTCCGGAAATGTTTTATTGAGAAGGCGA----------GGAAAGAGGGCTTCTACAACGCTG-----ATGCT-CATCCACTAATTGGGACCCTTAGcg---------------------cattttt
i caeSp111.Scaffold626  I 93 C 0
s caePb3.Scfld02_0       3980704 235 +  4147112 GGTGAAGCTAAGAGT------------ACACATTC----CCTTT------------------------------------TTGCCTGAGCAGAAGAAAATAGTTTTGCCACCCTCGGAG-------CAACATCATAAATTCTCGATGAAGTT--TCAAAGCCGAGTGGCA--tgagaagagg-g-----aaaaagac-TTGTGCG-GGCAACGT-CCTGTCCGGAAATGTTTTATTGAGAAGACG-----------GGCGAGAAAGCTTCTACAACTCTG-----ATGCTCCGTCCACTAATTGGGACCCTTAgcg---------------------ctttttc
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17990   222879 237 -   357190 -----AGGAAAAAAC------------------------C----------------CCTAATAGTGCATTCtttttttATTCCTCCGT------------------CTCCCTCTTGGAGCAACAAACAACATCATAAATTCTGGATAAAGTT--GACGAAGCGAGAAGAA--GAGGCATACG-------CAAAAGTC-TTCCCCG-CGCTGCGT-TGTG-CCGGAAATATTTTattgagaaaaagaagaagtagAGGGAGCAAAGG-------AAGGACGCGAGAAGGCG-CAACTACTAATTGGGACCCTTAGCG---------------------CTTCGTC
i caeJap4.Scaffold17990 C 0 I 186

a score=1097.000000
s ce10.chrX              5725166 2 + 17718866 TT
s cb4.chrX              11052352 2 + 21540570 ct
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2427763 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 I 390
s caeSp111.Scaffold626    268111 2 -  1189296 tt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3980939 2 +  4147112 tt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   223116 186 -   357190 I

a score=180.000000
s ce10.chrX              5725168 1 + 17718866 T
s cb4.chrX              11052355 1 + 21540570 t
i cb4.chrX              I 1 I 4
s caeSp111.Scaffold626    268113 1 -  1189296 t
i caeSp111.Scaffold626  C 0 I 315
s caePb3.Scfld02_0       3980941 1 +  4147112 c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   223116 186 -   357190 I
e caeRem4.Crem_Contig0   2427765 390 -  4500979 I

a score=-1120.000000
s ce10.chrX              5725169 38 + 17718866 -------------CAACTTATGTTTTGATTAAG------------AAAAATAAAAGGATGAAT
s cb4.chrX              11052360 48 + 21540570 -------------CAGCTAATG--ATAGTCGAGTTTATCGCTgtgaagaagacgaagacgaAT
i cb4.chrX              I 4 C 0
s caePb3.Scfld02_0       3980942 38 +  4147112 ttttcttgctcAAGGACTAATG--ATAGCAAAG-----------------------GATAAGT
i caePb3.Scfld02_0      C 0 I 403
e caeJap4.Scaffold17990   223116 186 -   357190 I
e caeSp111.Scaffold626    268114 315 -  1189296 I
e caeRem4.Crem_Contig0   2427765 390 -  4500979 I

a score=91.000000
s ce10.chrX              5725207 1 + 17718866 T
s cb4.chrX              11052408 1 + 21540570 T
i cb4.chrX              C 0 I 348
e caePb3.Scfld02_0       3980980 403 +  4147112 I
e caeJap4.Scaffold17990   223116 186 -   357190 I
e caeSp111.Scaffold626    268114 315 -  1189296 I
e caeRem4.Crem_Contig0   2427765 390 -  4500979 I

a score=0.000000
s ce10.chrX              5725208 744 + 17718866  
e caePb3.Scfld02_0       3980980 403 +  4147112 I
e caeJap4.Scaffold17990   223116 186 -   357190 I
e cb4.chrX              11052409 348 + 21540570 I
e caeSp111.Scaffold626    268114 315 -  1189296 I
e caeRem4.Crem_Contig0   2427765 390 -  4500979 I

a score=1114.000000
s ce10.chrX              5725952 102 + 17718866 AGATTATTCAATTGAAACTATAACTTTCTGGATACCAAAAAAAAACACTCTCGTTAGAGAAACTAAAATGAAACATTACGCCAATAATAACATGC-----------CAGACTG
s caeJap4.Scaffold17990   223302  99 -   357190 AAGTTAgtgaaaagaaatgaaaattt----gatgcaaaaaaaaaaaa---------aaaaaactaaactgaaa-acaacaacaacaacaaaagacaaaaaccaaaacaaaata
i caeJap4.Scaffold17990 I 186 C 0
e caePb3.Scfld02_0       3980980 403 +  4147112 I
e cb4.chrX              11052409 348 + 21540570 I
e caeSp111.Scaffold626    268114 315 -  1189296 I
e caeRem4.Crem_Contig0   2427765 390 -  4500979 I

a score=530.000000
s ce10.chrX              5726054  6 + 17718866 ---------------AACAAG
s caeRem4.Crem_Contig0   2428155  6 -  4500979 ---------------aacaaa
i caeRem4.Crem_Contig0  I 390 C 0
s caeJap4.Scaffold17990   223401 21 -   357190 aacaaaaatatcaacaacaag
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3980980 403 +  4147112 I
e cb4.chrX              11052409 348 + 21540570 I
e caeSp111.Scaffold626    268114 315 -  1189296 I

a score=1017.000000
s ce10.chrX              5726060 3 + 17718866 AAC
s caeRem4.Crem_Contig0   2428161 3 -  4500979 aac
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       3981383 3 +  4147112 AAG
i caePb3.Scfld02_0      I 403 I 2
s caeJap4.Scaffold17990   223422 3 -   357190 aac
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11052409 348 + 21540570 I
e caeSp111.Scaffold626    268114 315 -  1189296 I

a score=-73.000000
s ce10.chrX              5726063 17 + 17718866 --AAAAAAATTCACAGGAT------------
s cb4.chrX              11052757 17 + 21540570 --aaaaaCATGCAAAGCTT------------
i cb4.chrX              I 348 I 3
s caeRem4.Crem_Contig0   2428165 17 -  4500979 --aaaaaaaagctAAACGT------------
i caeRem4.Crem_Contig0  I 1 I 7
s caePb3.Scfld02_0       3981388 15 +  4147112 --GGAAACATGCAAAAC--------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   223425 31 -   357190 aaaaaaggaactaaaacGTGTCATGCAGAAT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    268114 315 -  1189296 I

a score=532494.000000
s ce10.chrX              5726080 442 + 17718866 AGAAACTTACCGGATCGCTGAGTGTAACCGTTTCCGTATTGAATTGATCCCCAATCATCAGCTGGCAGTGCTTCGGCTCCACAGGTCGACATC---GTCGTAGATGCGTCGGCGACAGCGAGTTCTTCTTCACGGGAGACGTCATCTCAGCCGGCATACTGTATTGCTTCGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCTGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGCTGGCGTCGGCATCGTCGTCACAATTAGTGGCCGTGTTGCTATCACCGCGTCGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATTGACTTACGTTTTTCCTTTGTCGCTGCTGGTGCGTTTGGAGCAGGCTGCGACTGTTGCGCAGCTGCTTCAAATTCGTTCGTATTATTGAGGGCTGGAAAA-----AAACG
s cb4.chrX              11052777 448 + 21540570 --AAACCAACCGGGTCGTCGAGGGTTACAGTTTCCGTCGTGAACTGATCTCCTATCATCAATTGGCAGTGCTTCGGTTCCACGGGTCGACATCGTTGTCGTAGATGCGTCGGCGACAGGGAGTTCTTCTTGACGGGTGACGTCATCTCGGCCGGCATACTATATTGCTTCGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCAGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGCTCGCGTCGGCATCGTCGTCACAATTAGTGGCCGTGTTGCTATCACCGCGTCGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATCGACTTACGTTTTTCCTTTGTTGCTGCTGGCGCATTTGGAGCAGGCTGCGAATGCTGCGCAGCTGCTTCAAATTCGTTCGTGTTATTGAGGGCTGAAATATGGGGAAACG
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2428189 445 -  4500979 TGAAACCAACCGGGTCGTCGAGAGTAACAGTTTCCGTATTGAATTGGTCCCCGATCATCAGCTGACAATGCTTCGGCTCCACCGGTCGACATCGACGACGTAGATGCGTAGGCGACAACGAGTTCTTCTTCACAGGAGACGTCATCTCGGCCGGCATACTGTATTGCTTCGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCAGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGCTGGCGTCGGCATCGTCGTCACAATTAGTGGTTGTGTTGCTATCACCGCGTCGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATCGACTTACGTTTTTCCTTTGTTGCTGCTGGCGCATTTGGAGCAGGCTGCGAATGTTGCGCAGCTGCTTCAAATTCATTCGTGTTATTGagggctgaaaaa-----aaacg
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    268429 447 -  1189296 AAAAACCAACCGGATCGTCGAGGGTAACAGTTTCCGTATTGAACTGATCTCCAATCATCAACTGACAATGCTTCGGCTCCACCGGTCGACACCGTCGTCGTAGATGCGTTGGCGACAGCGAGTTCTTCTTGGCCGGCGACGTCATCTCGGCCGGCATACTGTATTGCTTCGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCAGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGCTGGCGTCGGCATCGTCGTCACAATTAGTGGCCGTGTTGCTATCACCGCGTCGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATCGACTTACG-TTTTCCTTTGTTGCCGCTGGCGCATTTGGAGCAGGCTGCGACTGTTGCGCAGCTGCTTCAAATTCGTTCGTGTTATTGAgggctgaaaaaagaagaag--
i caeSp111.Scaffold626  I 315 C 0
s caePb3.Scfld02_0       3981403 443 +  4147112 TAAAACCAACCGGGTCGTCGAGTGTAACAGTTTCTGTGTTAAACTGATCTCCTATCATCAATTGGCAATGTTTGGGCTCCACGGGTCGACAGCGTCGTCGTAGATGCGTCGGTGACAGCGAGTTCTTCTTCACTGGAGATGTCATCTCTGCCGGCATACTGTATTGCTTGGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCAGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGCTGGCGTCGGCATCGTCGTCACAATTAGTGGCCGTGTTGCTATCACCGCGTCGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATCGACTTACGTTTTTCCTTTGTTGCTGTTGGCGCATTTGGAGCAGGCTGCGACTGTTGCGCAGCTGCTTCAAATTCGTTCGTGTTATTGAgggctgaaaaa-----aag--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   223456 445 -   357190 TCCAACAAACCGGATCGTCAAGCGTGACCGTCTCCGTATTGAACTGATCGCCAATCATCAACTGACAATGCTTCGGCTCCACCGGACGACACCGTCGACGCAAATGTGTTGGCGACAACGAGTTCTTCTTCACCGGCGACGTCATCTCGGCCGGCATGCTGTACTGTTGCGATGCTGCGAAGATATATCGTCGTTTTGATCCGGCAGACCCGACAACACCTCTTCCACCAACCGCCGAGCCGGACGCGTCGGCGTCGGCATCGTCGTCGCAATTGGTGGTCGTGTTGCTATCACCGCGACGCAATCGGCGCGAAAACCGATCCAAACCGTGCCAAAGAATCGACTTACGTTTTTCTTTTGTCGCAGCTGGAGCATTTGGAGCAGTCTGCGACTGTTGCGCAGCTGCCACAAACTCGTTCGTGTTATTGAGGGCTGGAAATGGGAT-----
i caeJap4.Scaffold17990 C 0 C 0

a score=6535.000000
s ce10.chrX              5726522 11 + 17718866 CGATTCATCAT
s caeRem4.Crem_Contig0   2428634 11 -  4500979 cgaTTCCTAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    268876 11 -  1189296 cgatTCATCAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3981846 11 +  4147112 caattcatCAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   223901 11 -   357190 AGATTCGTTAT
i caeJap4.Scaffold17990 C 0 I 132
e cb4.chrX              11053225  0 + 21540570 C

a score=6175.000000
s ce10.chrX              5726533 48 + 17718866 GACGTATCTCTTTCAATTTCATTCCCCAGtctgtctctctctctctct
s caeRem4.Crem_Contig0   2428645 28 -  4500979 GACGTAACTC-------------------TCAATCTCCCCCTCCTCC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    268887 32 -  1189296 GACGTatctctct----------------tccatctccccccccccct
i caeSp111.Scaffold626  C 0 I 99
s caePb3.Scfld02_0       3981857 29 +  4147112 GACGTATCTC-------------------TCAATCttcccctcttctt
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17990   223912 132 -   357190 I
e cb4.chrX              11053225  0 + 21540570 C

a score=640.000000
s ce10.chrX              5726581 4 + 17718866 ctct
s caeRem4.Crem_Contig0   2428673 4 -  4500979 Ctcc
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3981890 4 +  4147112 ttct
i caePb3.Scfld02_0      I 4 I 69
e caeJap4.Scaffold17990   223912 132 -   357190 I
e cb4.chrX              11053225 0 + 21540570 C
e caeSp111.Scaffold626    268919 99 -  1189296 I

a score=3.000000
s ce10.chrX              5726585 6 + 17718866 ctctct
s caeRem4.Crem_Contig0   2428677 6 -  4500979 ttcagt
i caeRem4.Crem_Contig0  C 0 I 80
e caePb3.Scfld02_0       3981894 69 +  4147112 I
e caeJap4.Scaffold17990   223912 132 -   357190 I
e cb4.chrX              11053225 0 + 21540570 C
e caeSp111.Scaffold626    268919 99 -  1189296 I

a score=0.000000
s ce10.chrX              5726591 78 + 17718866 ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcATTTTTTCTTTCC
e caePb3.Scfld02_0       3981894 69 +  4147112 I
e caeJap4.Scaffold17990   223912 132 -   357190 I
e cb4.chrX              11053225  0 + 21540570 C
e caeSp111.Scaffold626    268919 99 -  1189296 I
e caeRem4.Crem_Contig0   2428683 80 -  4500979 I

a score=-137.000000
s ce10.chrX              5726669 22 + 17718866 TTTTTGTTGTCCGTGTTTGGTC
s cb4.chrX              11053225 22 + 21540570 TTGGTTTTGAATACTTTTGAAG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3981894 69 +  4147112 I
e caeJap4.Scaffold17990   223912 132 -   357190 I
e caeSp111.Scaffold626    268919 99 -  1189296 I
e caeRem4.Crem_Contig0   2428683 80 -  4500979 I

a score=-529.000000
s ce10.chrX              5726691 2 + 17718866 -CA
s cb4.chrX              11053247 2 + 21540570 -CA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    269018 2 -  1189296 CC-
i caeSp111.Scaffold626  I 99 C 0
e caePb3.Scfld02_0       3981894 69 +  4147112 I
e caeJap4.Scaffold17990   223912 132 -   357190 I
e caeRem4.Crem_Contig0   2428683 80 -  4500979 I

a score=4898.000000
s ce10.chrX              5726693 16 + 17718866 CCCGTTGTTCAAAGAA
s cb4.chrX              11053249  2 + 21540570 --------------CA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2428763 16 -  4500979 CCCGTTGTTTAAAGTG
i caeRem4.Crem_Contig0  I 80 C 0
s caeSp111.Scaffold626    269020 16 -  1189296 CCTGTTGTTTAAAATG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3981963 16 +  4147112 CCCGTTGTTTAAAATG
i caePb3.Scfld02_0      I 69 C 0
e caeJap4.Scaffold17990   223912 132 -   357190 I

a score=155735.000000
s ce10.chrX              5726709 150 + 17718866 AAACCCACAGGTTGGTTGGCTATGCCCATTTTTATCTTCATCATCCGCCGCTAGTTCTTCATCTGTGAAAGATGGTTGAGAGTTGTTTGTGGATCGTAAGAAACGTGGCCAGCAATCGTACTTCAACAAGTGAAGAATCTGGAA--------------GAAAAC-
s cb4.chrX              11053251 150 + 21540570 AAACTCACAAGTTGGTTGGCTATGCCCGTTTTTGTCTTCATCATCCGCGGCTAGCTCTTCATCCGTAAAAGAAGGTTGTGTATTATTAGTGGACCTCAAAAAACGAGGCCAACAATCATATTTCAACAAGTGAAGAATCTGAAA--------------CAGAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2428779 150 -  4500979 AAACGCACAAGTTGGTTGGCTGtgcccatttttctcttcatcatcCGCCGCTAGCTCTTCATCCGTGAACGAAGGCTGCGTATTATTAGTAGACCGCAAGAAACGTGGCCAACAATCATACTTCAACAagtgaagaatctgaaa--------------tagcAA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    269036 151 -  1189296 AAACGCACAAGTTGGCTGGCTGtgcccatttttctcttcatcatccGCCGCTAGCTCTTCATCCGTAAACGAAGGTTGTGTGTTATTAGTAGACCGCAAGAAACGTGGCCAGCAATCGTACTTCAGCAAGTGAAGAAtctggaaa-------------caaaaa-
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       3981979 149 +  4147112 AAACGCACAAGTTGGCTGGCTgtgcccatttttttcttcatcatccgCCGCTAGCTCTTCATCCGTAAACGAAGGCTGCGTGTTATTAGTAGACCGCAAAAAACGTGGCCAGCAATCATACTTCAGCAAGtgaagaatctggaa---------------aatag-
i caePb3.Scfld02_0      C 0 I 32
s caeJap4.Scaffold17990   224044 162 -   357190 aaacgcacAAGTTGCTTGGCTGTGCCCAtttttttCGTCATCATCCGCC---AGCTCTTCATCCGTAAACGAAGGCTGCACATTATTAGTGGACCTTAAGAAACGTGGCCAACAGTCGTACTTTAGCAAGTGAAGAATCTGGAAATGAGGGGTATAAGTGAAATG
i caeJap4.Scaffold17990 I 132 C 0

a score=-5496.000000
s ce10.chrX              5726859 23 + 17718866 TCAGTATCATCTATAAGACTTTT----
s cb4.chrX              11053401 22 + 21540570 -TGTGTAAACCTATAACACTTCC----
i cb4.chrX              C 0 I 10
s caeRem4.Crem_Contig0   2428929 17 -  4500979 -TCAGTATATCTATAGAA---------
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    269193 18 -  1189296 tcattttaatcCGCAAAT---------
i caeSp111.Scaffold626  I 6 C 0
s caeJap4.Scaffold17990   224206 22 -   357190 TGTGTTGGAGATATAAca-----taag
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3982128 32 +  4147112 I

a score=289372.000000
s ce10.chrX              5726882 364 + 17718866 AAATTTCAAACCTGATATTGTGCTACGTCATAAGTATCTAAAGGGAATCCACCACTTTCAACAGTTTCTCGTATTCGCTTGCTTGTTGAATTGTCAATGTTTACGGGCTCAGTACTATTCATTGCAAAATATCTGTCAAATATTCGACGTCCAAAAGATGATCTCTCCTAAAA---------------------------------TCGAAAAATATTTATGA------------------AGAG--AACCC----TCAATGT---GTACCTGGAAGTCTTGAATTTCTTTAAACTGCTCTACAGCTAAATAGAAATTTAAATTCTCTGCACAAAATTGCTGCTCGAGAAATTCTTGAAATGGAGCCCGTAACACTGGATCGCGGATGACTTTCTTGAAGATCTGCAA-ATATAAAC-TTTAATAC
s cb4.chrX              11053433 371 + 21540570 aaaaatcaaacctgATACTGTGCTATATCATAAGTATCTAAAGGAAATGCACCACTTTCTACTGTTTCTCGTATCCGTTTGCTGGTTGAATTGTCTATATTAACAGGTTCCGTACTATTCATTGCAAAATATCGGTCAAATATTCGTCGTCCAAAAGAAACTCtctcctgaaaaatgaaa---------------------acttttgaattaattgatctcaa-----------------agaa--AATCA----T---------GTACCTGAAAGTCTGATATTTCTTTAAATTGTTCGACTGCTaagtaaaaatttaaattttccgcACAAAATTGTTGTTCCAGAAATTCTTGAAAGGGTGAACGTAATAAAGGGTCGCGGATGACTTTCttgaagatctgaaa-aatctaat-atTATTAC
i cb4.chrX              I 10 I 2
s caeRem4.Crem_Contig0   2428954 372 -  4500979 ATGTTTCAAACCTGATATTGGGCTACATCATATGTATCTAAAGGAAAAGCACCACTTTCTACTGTTTCTCGTATTCGTTTACTTGTGGAATTATCAATATTCACAGGTTCTGTACTATTCATGGCAAAATATCTGTCAAATATTCGTCGTCCAAAGGAGGATCTCtcctggaaaaataa----------------------------taaataaataatgtGAA-----------------AACATTAATTAGAGGT---------ATACCTGGAAATCTTGTATTTCTTTGAATTGTTCTACTgctaaataaaaattcaaattttctgcacAAAATTGCTGttccaaaaattcttgaaaGGGTGCTCGTAACACAGGGTCGCGgatgacttttttgaagatctgaaataaattaataagTATTGA
i caeRem4.Crem_Contig0  I 8 I 2
s caeSp111.Scaffold626    269211 392 -  1189296 -GAATGCGGACCTGATATTGTGCCACGTCATAGGTGTCTAATGGAAATGCACCACTTTCAACAGTTTCTCGTATCCGTTTGCTTGTTGAATTATCAATGTTCACTGGTTCCGTACTGTTCATTGCAAAATATCTGTCGAATATTCGTCTTCCAAAAGAAGACCTTTCCTGGAAAACACAA-----CACTGATTGTTGTGATAAATATGAAgggagatat-tgaaaaacaaaacaaaacg--agGA--AATAA----C---------ATACTTGGAAATCTTGTATTTCCTTGAATTGTTCAACTGCTAAATagaaatttagattttctgCACAGAATTGTTGTTCCAGAAATTCTTGAAAGGGTGCTCGTAATACGGGGTCGCGgatgacttttttgaagatctGCAA----------ATAATTTC
i caeSp111.Scaffold626  C 0 I 13
s caePb3.Scfld02_0       3982160 402 +  4147112 aaaatacaaacctGATACTGAGCCACGTCATATGTATCTAAAGGGAATGCACCACTTTCAACAGTTTCTCGTATCCGTTTGCTTGTAGAATTGTCTATATTCACAGGTTCAGTACTATTCATTGCAAAATATCTGTCAAATATTCGTCTTCCAAAAGAAGACCTTTCCTGCAAAACACAA-----CACTTATTGTAATTGGATTCTCTAAAGGGAATATATAACATCCGGaacaaaacaacagaa--aatga----ctgaaat---gtACCTGgaaatcttgaatttctttAAATTGTTCAACTgctaaataaaaattgagattttctgcGCAAAACTGTTGTTCCAGAAATTCTTGAAAGGGTGTTCGTAATACAGGGTCGCggatgacttttttgaagatctgaaa----------atatttaa
i caePb3.Scfld02_0      I 32 I 64
s caeJap4.Scaffold17990   224228 380 -   357190 aaaaaacaaaccTGATATTGTGCCACGTCATACGTATCTAACGGGAATGTCCCACTTTCTACGGTTTCTCGTATCCTTTTGCTAGTCGAGTTGTCAATATTTACTGGCTCCGTACTATTCATTGCAAAATATCGGTCAAATATGCGTCTACCAAATGAAGACCTTTCCTAGAATAAGAAAAGGGATAATGAGCGCGAGCACA-----CGCACAATATTTGTTat-----------------tgat--aataa----taataacaaagTACCTGAAAGTCCTGAATTTCCTTGAATTGTTCCACTGCTAGATAGAAATTGAGATTTTCAGCGCAAAATTGTTGTTCGAGAAATTCTTGGAATGGTGCTCGCAGGACTGGGTCGCGGATGACTTTTTTGAAGATCTGAAA------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-17992.000000
s ce10.chrX              5727246 64 + 17718866 AATGATCCCTTGTCACAAATATAAAATGTTTGTTGT-----------------ATTTTGC----TC---ATTTCTCCTGACAACTTCA
s cb4.chrX              11053806 84 + 21540570 gtatttcttttttctctgcttttgattttttgtgtctTAACCcggaactgaaaaattttcaaattc---caatctTCTTTTAGAT-CA
i cb4.chrX              I 2 I 11
s caeRem4.Crem_Contig0   2429328 51 -  4500979 CTCCATCATTtctcaa-----ataatttattgtcTC----------------------------TC---CACTTCCCCCTCAACC-CA
i caeRem4.Crem_Contig0  I 2 I 16
s caeSp111.Scaffold626    269616 60 -  1189296 CTAGGTCccttttgaactttttggaaattttggtTC----------------------------TCGGAAACATCATGTTCGGCTACA
i caeSp111.Scaffold626  I 13 I 16
s caeJap4.Scaffold17990   224608 34 -   357190 -------TTCTTGCAATTCCCTCGATTccttttatt-----------------gattt------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3982562 64 +  4147112 I

a score=136249.000000
s ce10.chrX              5727310 401 + 17718866  
s cb4.chrX              11053901 453 + 21540570  
i cb4.chrX              I 11 C 0
s caeRem4.Crem_Contig0   2429395 380 -  4500979  
i caeRem4.Crem_Contig0  I 16 C 0
s caeSp111.Scaffold626    269692 403 -  1189296  
i caeSp111.Scaffold626  I 16 C 0
s caePb3.Scfld02_0       3982626 366 +  4147112  
i caePb3.Scfld02_0      I 64 C 0
s caeJap4.Scaffold17990   224642 373 -   357190  
i caeJap4.Scaffold17990 C 0 I 1100

a score=-66603.000000
s ce10.chrX              5727711  670 + 17718866  
s cb4.chrX              11054354  961 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2429775 1169 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    270095  758 -  1189296  
i caeSp111.Scaffold626  C 0 I 135
s caePb3.Scfld02_0       3982992  932 +  4147112  
i caePb3.Scfld02_0      C 0 I 11
e caeJap4.Scaffold17990   225015 1100 -   357190 I

a score=-8251.000000
s ce10.chrX              5728381  54 + 17718866 --TGTTGTAGAA--------------------------TCTTACATAGTTAACA---------------------------------------------------TAATTTTTCTATTTTCTGACA----------TCAAGTG
s cb4.chrX              11055315 143 + 21540570 TCCGTTTCCGAGAGAACAATTTATTCCATTTTCGTGCAtctcactttctccccaatttccattttctcatctatcttttctttcactttcttctgttttcatttttcattttcttcttcttcttcatttttttatttcaattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2430944  70 -  4500979 TCCATTTTGTAG---------TAT--------------TCTCAGtttcttccca----------------------------------------------ctttttcttcttctttctcttctttgtatt----tttccattt
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3983935  73 +  4147112 --TGTTTCCGAG--AAcaatttattccattttcGG---CCGCTCTGTTCcctca----------------------------------------------ttctttcttcttcttttcttcccacC-----------------
i caePb3.Scfld02_0      I 11 C 0
e caeJap4.Scaffold17990   225015 1100 -   357190 I
e caeSp111.Scaffold626    270853 135 -  1189296 I

a score=5.000000
s ce10.chrX              5728435 6 + 17718866 TTCAAA
s cb4.chrX              11055458 3 + 21540570 ttc---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2431014 3 -  4500979 ttc---
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   226115 6 -   357190 ttcaaa
i caeJap4.Scaffold17990 I 1100 C 0
e caePb3.Scfld02_0       3984008 0 +  4147112 C
e caeSp111.Scaffold626    270853 135 -  1189296 I

a score=405296.000000
s ce10.chrX              5728441 726 + 17718866  
s cb4.chrX              11055461 746 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2431017 706 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    270988 732 -  1189296  
i caeSp111.Scaffold626  I 135 C 0
s caePb3.Scfld02_0       3984008 718 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   226121 616 -   357190  
i caeJap4.Scaffold17990 C 0 I 109

a score=18117.000000
s ce10.chrX              5729167 102 + 17718866 TGT--GCGGCA----AATACTGAAGACATACATACAC---------------GACGATGATGGAGGTCTGAAAG-GCAGAAAGAGGGACGT---------GGAGAGA-GAGAAGGCTCGCGCAC---------GCTGTGGCGT
s cb4.chrX              11056207 105 + 21540570 AGTAAAAGACAAGACAAGAAAGGCGAC-------------------------GACGATGGTG--AGGCTGAAAG-TGAGG---AATGTGGCG-------GAGAGAAACGAGAAGGCTCGCGCACCCTCTCCGATTCTCCGCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2431723  99 -  4500979 TGTGCGCGGCA----TATATAGACGACG------------------------GACGACAGC----GGCTGGAAG-TGAGGCGAAATGAGGCGACTTGgagagaggaa-gaggaggCTCGCGCGC----------TCGCCGCGt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    271720 116 -  1189296 TTTTCGCGGCA----AATATAgacgacagacgacggcgacgacgacgacgacgacgacgacgttGGGCTGGAAA-GGAGGCAAACggaggg---------agagaaa-gagaaggctCGCGCAC------------GGCGCGt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3984726 102 +  4147112 TGCGCGCGGCA----AATATAGACGACA------------------------GACGACGACGTTATGCTGAAAAGGGAGGCAAACGGAGGGGGGacatgaagagaaa-gagaaggcTCGCGCAC------------GGCgcgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   226737 109 -   357190 I

a score=279355.000000
s ce10.chrX              5729269 627 + 17718866  
s cb4.chrX              11056312 667 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2431822 623 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    271836 675 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3984828 630 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   226846 621 -   357190  
i caeJap4.Scaffold17990 I 109 I 2325

a score=42983.000000
s ce10.chrX              5729896 141 + 17718866 ACTACTCT--CCACGCAAAT---ATAACTGAGCACAGACATTTCCTGTGCTTCTAGTTGAATGAATGAGTTTTGCGACACGCGATTCAGATTAGGTCTTTAAGTCTTCGCTGTGTAGACACACGAACAAGAGAATCTAAATTTGTT---------------
s cb4.chrX              11056979 133 + 21540570 ACTACACACTCCACGCAAAC---ACAACT-----CAGACGTTTCTT-TTCACGGAGCCGAATGAATGAGTTTTGCGACACGCGATTCAGAATAGGCCGCTTCTT-----AGGCGTG-----AAGGacgaagaattgaaaatttcgactgatt---------
i cb4.chrX              C 0 I 1090
s caeRem4.Crem_Contig0   2432445  99 -  4500979 ACTACTCG--CCACGCAAAC---ACAACTCAACACAGACGTTTCCCGTGCCCCTAGTTGAATGACTGAGTTTTGCGACACGCGATTTAGACTAGGTGGCTTGGT---------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    272511 139 -  1189296 ACTACTTG--CCACGCAAATACAACAACTCAACACAGACGTTTCCCGTGCCACaagttgaatgaatgagTTTTGCGACACGCGATTCAGACTAGGTCGCCT--------------------CCGAAcggaaaaccaaaaaaaagaaatgaagatgacGATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3985458 140 +  4147112 ACTACTTG--CCACGCAAAT---ACAACTCAACGCAGACGTTTCCCGTGCCACTAGTTGAATGAATGAGTTTTGCGACACGCGATTTAGGCTAGGTCGTGTAGT--------CTTAGATGGACGAAcggaaaaccagaaaaacga---gaagacga-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I

a score=-6500.000000
s ce10.chrX              5730037 48 + 17718866 --GAAAAATCACAAT---GCACAGC-TCAAGACAATTGCCA--GATCACGAGCAAT----
s caeRem4.Crem_Contig0   2432544 44 -  4500979 GAAAGAATGAAC------GAA-----TCACGGAAAATCGGGA-GCCGACGAGCAAC----
i caeRem4.Crem_Contig0  C 0 I 310
s caeSp111.Scaffold626    272650 54 -  1189296 --GAGAAGTGACACC---GGATTTTCTCATGAATATTGGCAA-GGATATACGCGGAGAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3985598 57 +  4147112 ---agaagtgACATCAAGAAATTGTGTGAAGATCAATGTCAATGGCTACAACTTGTGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11057112 1090 + 21540570 I

a score=-2870.000000
s ce10.chrX              5730085 19 + 17718866 ATTCATAATGC--ACAGTTCT------------------------------
s caeSp111.Scaffold626    272704 19 -  1189296 ATGGATAACTC--AAGGGTCC------------------------------
i caeSp111.Scaffold626  C 0 I 126
s caePb3.Scfld02_0       3985655 51 +  4147112 ACTGCTGGCTCAGAATAATCTAATTACTAATTGTtgaattaaaacattttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11057112 1090 + 21540570 I
e caeRem4.Crem_Contig0   2432588 310 -  4500979 I

a score=-885.000000
s ce10.chrX              5730104 170 + 17718866 --------------------GCATACAAGT--GCTTCAG-------TTTCAGGAACATAC------CATAATAACATTTTTTTCCGCTA-----------AATTTTTGAAACACA-------TCGGAATACTAATGACATTAAACTAAATGAAGAATCAAAAAATATCAGGAAAAAGGTGTAGGCAACATTTCAGAA--ATGAAGAATATAGTACCAGTTATTCA
s caePb3.Scfld02_0       3985706 216 +  4147112 aaaatttacacaacaggaaagaaaataaataagcTCAAGCTACAAACTTCGGCAAAAAACATTGTTCCTACTAATTTTATATCCCAATAAAGGAGCgtccaatttttaaaataaagatttttttggaatttcaacaaaa--aacagaagtgaaatttcaaatgaacttaaaaataaatgtttggtAACCCTCCAGAATcatg-----tttagtttt--tttatca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11057112 1090 + 21540570 I
e caeSp111.Scaffold626    272723 126 -  1189296 I
e caeRem4.Crem_Contig0   2432588 310 -  4500979 I

a score=-534.000000
s ce10.chrX              5730274 75 + 17718866 GTTCTTTTAATTTCTGA--------ATAAAACCAGTTCCTTCACAATGTTGCTCAA-------GAAATTGCCTTTTGCGCAATTTTTTTT
s caeSp111.Scaffold626    272849 81 -  1189296 atttatttaatctccgtttatttttattcaatgaagt--------atttctctgaatttatttgaaaat-ctgtctatttagattttttc
i caeSp111.Scaffold626  I 126 C 0
s caePb3.Scfld02_0       3985922 83 +  4147112 attttgcCAATTTAAGGTGAACAACATGCAATTAGGTCCGGtaagatttttc---attta---gaCAGT-TTTTCAACGCAGATTTTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11057112 1090 + 21540570 I
e caeRem4.Crem_Contig0   2432588 310 -  4500979 I

a score=-16118.000000
s ce10.chrX              5730349 81 + 17718866 -----AATTTTTAAGTGTTCAGAACTTTGTGTTAGCGAAC------AATGTCTAAAAAGGTTAATTTTGACGATTCAAAAGGGTTTTGTTCA---------------
s caeRem4.Crem_Contig0   2432898 73 -  4500979 -----aatattttaatatACAAA---CTGTTTCA-CCTATTAAATGACTTTTACAGAAGCTTAT--------AACCA----AACActatgttga-------------
i caeRem4.Crem_Contig0  I 310 I 4
s caeSp111.Scaffold626    272930 64 -  1189296 attcaagtACTTC------------------------tgt------aatgaagaaaaaacataa--------aaccACAGAAACCCTGCTTGGAG-----TTACCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3986005 85 +  4147112 AGTCGCCTATTTCAGAAT---TA---TTGAGTTC-TATAT------ACTTCAGCAAGAAAA-GA--------AGCCGAAGCGATTCATTTTAGTGGATGATTGATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11057112 1090 + 21540570 I

a score=43421.000000
s ce10.chrX              5730430 196 + 17718866 ----------------------------AAAATATAAAAGTTGTTG----------------AACGAATTGAAGGCAATCGAAAAATGAAAAACTGTCTAAATTTACAACATTTGTCATTAAAAAAATC-AAGGTATGAAG-CACTGATCTAAAAA-----CAGC-------GAAAGCCGGAAAAGATTCCTGCCAAATTCGTTTACATTTTGGTTCTACGAAAAGTGATTCATCAAAGTAAACAGTGGCTGAG--
s cb4.chrX              11058202 221 + 21540570 aaaatttggaaatttttga--------aagaactcATGAATTACAGTCACGCCTTGATGAAAATCAAATGGAA---ACTTgagaactgatt-----tt----ttttaatagttta---------atatt-aaaaaagaaactcgAAAGCCAAAAAT-----AAGCCTCGAAAGAGCTGCGAGAGAGCTTCCAACCAAATTCGTTTACATTTTGGTTCTACGAAAAGTGATTCATCAAAGTAAACAGTGGTTGGCTG
i cb4.chrX              I 1090 C 0
s caeRem4.Crem_Contig0   2432975 211 -  4500979 aaaagttgtaCAACCCTAATGTGAAATGAGAGAACAAGAACATCAG----------------AACAGATGAAA------TGA-AACCAACA-----TTGAAACCTGAACCGTTAATAGTCA--GATCTC-AAAACAGAG---CGCGAGCCAAATGA-----GAGCC------GAGACGAGCGAGAGCTTCCATCCAAATTCGTTTACATTTTGGTTCTACGAAAAGTGATTCATCAAAGTAAACAGTGGTTGGCTG
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    272994 183 -  1189296 ----------------------------AAACcggaaaagtgtcaa---------------aagtggatg-------------aaataaat-----ttgaaacctAAACTTTTAATAGTTT---GCGCCAAAAACAGAGAG-CGAGAGCAAAATGAGCCGGGAACC------GAGAGCCGCGAGAGCTTCCAACCAAATTCGTTTACATTTTGGTTCTACGAAAAGTGATTCATCAAAGTAAACAGTGGTTGGA--
i caeSp111.Scaffold626  C 0 I 18
s caePb3.Scfld02_0       3986090 183 +  4147112 ----------------------------ACAATGTGACAAAGTCAA---------------AAATGGATGGGA------Cga-gaatgaaa-----ctgaaaccTAAACCTCTAATAG--------GCC-AAAACAGAAAT-CGAGAGCCAAATGAGCCGTGAGCC------GAGAGCCGCAAAAGCTTCCAACCAAATTCGTTTACATTTTGGTTCtacgaaaaatgattcatcaaAGTAAACAGTGGTTGGT--
i caePb3.Scfld02_0      C 0 I 2
e caeJap4.Scaffold17990   227467 2325 -   357190 I

a score=-1846.000000
s ce10.chrX              5730626 13 + 17718866 GC--AAGGCA-----GAGAG
s cb4.chrX              11058423 17 + 21540570 GTTGAAGGCTTGCC-GAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2433186 14 -  4500979 GC--AAAGC-CGCC-GAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3986275 16 +  4147112 GT--GAGCCTCGCCTGAG--
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    273177 18 -  1189296 I

a score=244264.000000
s ce10.chrX              5730639 489 + 17718866  
s cb4.chrX              11058440 646 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2433200 483 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    273195 476 -  1189296  
i caeSp111.Scaffold626  I 18 I 600
s caePb3.Scfld02_0       3986291 475 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I

a score=1506.000000
s ce10.chrX              5731128 17 + 17718866 TCAAC---AAAAAAATCACG
s cb4.chrX              11059086 20 + 21540570 Cctccccaaaaaaaatcatg
i cb4.chrX              C 0 I 597
s caeRem4.Crem_Contig0   2433683 12 -  4500979 --------aaaaaaatcacg
i caeRem4.Crem_Contig0  C 0 I 682
s caePb3.Scfld02_0       3986766 12 +  4147112 -------AGAAAATATCAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    273671 600 -  1189296 I

a score=0.000000
s ce10.chrX              5731145 13 + 17718866 ACAACTCTCCATT
e caePb3.Scfld02_0       3986778  0 +  4147112 C
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11059106 597 + 21540570 I
e caeSp111.Scaffold626    273671 600 -  1189296 I
e caeRem4.Crem_Contig0   2433695 682 -  4500979 I

a score=1733.000000
s ce10.chrX              5731158 51 + 17718866 AGTTTCATTTTTTGATAGAATTGAGACTTGCCCAAAAAAGCATGACcatca
s caePb3.Scfld02_0       3986778 48 +  4147112 -GTCCCACTCATTCATAGAAATGAAACTATTTC--AAAAGCGTGTCcatca
i caePb3.Scfld02_0      C 0 I 1016
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11059106 597 + 21540570 I
e caeSp111.Scaffold626    273671 600 -  1189296 I
e caeRem4.Crem_Contig0   2433695 682 -  4500979 I

a score=0.000000
s ce10.chrX              5731209 2080 + 17718866  
e caePb3.Scfld02_0       3986826 1016 +  4147112 I
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11059106  597 + 21540570 I
e caeSp111.Scaffold626    273671  600 -  1189296 I
e caeRem4.Crem_Contig0   2433695  682 -  4500979 I

a score=873.000000
s ce10.chrX              5733289 3 + 17718866 CCA
s caeRem4.Crem_Contig0   2434377 3 -  4500979 CCA
i caeRem4.Crem_Contig0  I 682 C 0
s caePb3.Scfld02_0       3987842 3 +  4147112 CCA
i caePb3.Scfld02_0      I 1016 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e cb4.chrX              11059106 597 + 21540570 I
e caeSp111.Scaffold626    273671 600 -  1189296 I

a score=546.000000
s ce10.chrX              5733292 1 + 17718866 A
s cb4.chrX              11059703 1 + 21540570 A
i cb4.chrX              I 597 C 0
s caeRem4.Crem_Contig0   2434380 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3987845 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    273671 600 -  1189296 I

a score=106149.000000
s ce10.chrX              5733293 308 + 17718866 GATAAGTTT-GAGAACAAAGTCTCGTATTA----CA-TGAACATCTCCATTTTCCGTGCTTCCAATTTTAGGCATGCTAT-------------------TTCACTACGTCCCATGCCGCCACTCGGTCCAATTTCCTTTTTCTCTT--AC-------------------------------------------ATGTCGTCCGGTGTGATATGTAACTGACAAC------AACAAAAACAACACGAA------------------------------CA---ACTCTAGGG--ACTTACCTACACG-CCGTATTGTCAGCAGCTCTATAGTTCGCTACTTGGCGACGGTTG--ATTGTAAACTTAACCTGTTTCTCACACAAACACTAAC-----AGAAACTGCACTCTTCTGATGTCTT----CACTTGT--
s cb4.chrX              11059704 401 + 21540570 GATAACTTTGGAGAACAAAATCTCGAATTACAGGCA-GGAACAGCTCCATTTTCCGCGCTCCCAATTTTG-----CCTACCCGACGACATACACTCACATGCACAACATCCCACTTC--------ATCCAATTTCCTATCCTTCTTCTACTTTTACTCTTCATTTttagaaggaaaagaagaagtagtAAAAGTAGTTGTCCGGTTTGATATGCAACTGACAACTAAGGGAACGGAAGCAATAGCAGCACAGAACCACACAATCAAACAGACGAAAAAA---CACGCCACT--CGCCACTTACCTGACCGAATCGTCAGCGG-----TGATTCGGTGTTT-----TTGTTGTGTCTGTCAACCTAACCTGTTTTTCA---ACACACTCgccgaaaaaaatctgaatctttctgatttttttctcgactcctTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2434381 292 -  4500979 GATAACTTT-GAGAACAAGATCTCGTGTTA----CA-GGAACATCTCCATTTTCCGTGCTCCCAATTTTC-----CCTAC-------------------GACACTACGTCCCATCTC--------ATCCAATTTCCTTTTC----------------------------------------------------TAGCTGTCCGATTTGATATTCAACTGACAAC------AACAG--GCCATagcag-----------------aagaagagaaataaa---aactcGGGG--ACTCACTTACCTG-CTGTATCGTCAGCGG-----TAATTCGATGTTT-----TTG-TGT-TCTGTCAACCTAACCTGTTTTTCA---ACGCACTCgc-----aaaatctgaatttttctgattttttgtgcctctctttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    274271 310 -  1189296 GATAACTTT-GAGAACAAAATCTCATGTTA----CAGGGAACATCTCCATTTTCCGCGATCCTAATTTTG-----CCTAC-------------------GACGCTATGTCCGTTTTC--------GtccaatttccttttttggttcGGC-------------------------------------------TAGCTGTCCGGATTGATATGTGACTGACAAC------AACAAGAACGGAAAGAA----------ACcgacgaagaagacgaaaaaactCAAGAGAGGGTAGCTCACTTACCTG-CCGTATCGTCAGCAG-----Taattcgttgttt-----ttcttg--tctGTCAACCTAACCTGTTTTTCA---GCACACCGac----aaaaatctgaatctTTGTGATTCCTT------CCTTGT-
i caeSp111.Scaffold626  I 600 I 102
s caePb3.Scfld02_0       3987846 297 +  4147112 GATAACTTT-GAGAACAAAATCTCAAGTTA----CA-GGAACATCTCCATTTTCTGCGCTCCCAATTTTG-----CCTAC-------------------GAAGCTATGTCCCAATTC--------gtccaattttcttcttcttttc-tc-------------------------------------------tagctGTCCGGTTTGATATGCAACTGACAAC------AACAGGAACGGGGGAAg----------------gaagaatgcaaaaaaa---aaacgaggg--acTCACTTACCTG-CAGTATCGTCAGCAG-----TAATTCGCTGTTT-----TTGCTG--TCTGTCAACCTAACCTGTTTTTCA---ACACAAtgac----aaaaatctgaatctttctgatttttt------ctcgtt-
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990   227467 2325 -   357190 I

a score=-2608.000000
s ce10.chrX              5733601 23 + 17718866 GGACGGCTCACGT-------------------CAAAACAG-----TA
s cb4.chrX              11060105 34 + 21540570 -------TCTCTC------CTCTGTTTTGACAAAAAACAGAACACCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2434673 16 -  4500979 -------ttttgc-------------------gaaaacaG-----CA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3988144 38 +  4147112 ----ctctctctctattccctctttcctcctcGAAAACAG-----CA
i caePb3.Scfld02_0      I 1 I 87
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    274581 102 -  1189296 I

a score=-783.000000
s ce10.chrX              5733624 51 + 17718866 TGAGCGT-GTTTCTTA------TATGGAGTGGG-------------TTAAATTATAGAAAAAAG---AGTGAAA
s cb4.chrX              11060139 73 + 21540570 GCAGTGA-ATATTGTAACTTTGTGTGCAGTGTGACGTTTTCTGacttcaggttacggtagaaaGCAAActcaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2434689 67 -  4500979 GCAATGATGAATCGTAGCAGTG---GCAGTGTGACG-ACGCTGATTTTGAGTTATGGTAAATGG---AGTGAAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3988182 87 +  4147112 I
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    274581 102 -  1189296 I

a score=-843.000000
s ce10.chrX              5733675 9 + 17718866 TTAATGTAA--
s cb4.chrX              11060212 9 + 21540570 ctgataaaa--
i cb4.chrX              C 0 I 9
s caeRem4.Crem_Contig0   2434756 9 -  4500979 CAGATGAAG--
i caeRem4.Crem_Contig0  C 0 I 8
s caePb3.Scfld02_0       3988269 9 +  4147112 --tttaaaaat
i caePb3.Scfld02_0      I 87 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I
e caeSp111.Scaffold626    274581 102 -  1189296 I

a score=50094.000000
s ce10.chrX              5733684 282 + 17718866  
s cb4.chrX              11060230 508 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2434773 359 -  4500979  
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    274683 377 -  1189296  
i caeSp111.Scaffold626  I 102 C 0
s caePb3.Scfld02_0       3988278 369 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   227467 2325 -   357190 I

a score=161114.000000
s ce10.chrX              5733966 224 + 17718866 GTTTTTGGGTGGAAGAGAGAGAGAGAGAGAGGGAAAAGGTATCATGTTTC-AAAGC------ACAGTGCGCGTGGATTTCAGTAGAAAATGTG--TGGGGCAGATT-GGGCTTTAGGTGAGGTA----------------GGGCCCCCTTATTTGCATACCATTAAGTGC---ACACATGATGAGTCTTCTCAAGTTTCT------------TCTACGCCAGATTCA-ATATGC--------------------------------CATGTG---TGTTCTTATCCATGCTCTTG-TCATCA
s cb4.chrX              11060738 275 + 21540570 GTTT-----TGGG--------------CGCGACAAAAAGTATCATGTTTC-GTGGCAACTCGACAGTGCGCGTGGATTTCAGAAGGGAATGTGTTTGGGGCAGATTGGGGCGTTAGGTGAGGTAGAAAGGGGTTGGGAGAGGGGCCACGTATTTGCATACCATTAAGTGC---ACACATGATGAGTCTTCTCAAGTTTCTCGTCTTCTCTTCTCTACGCCAGATTCA-ATATGTGCGTGTTTGAGGATGTGTGAGGATATGTGTTGTATGTGTC-TGTTCTTATCCATA-TTTTG-TCATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435132 234 -  4500979 GTTTTTGGGTGGA--------------AGAGACAAAAAGTATCATGTTTC-AAAGC------ACAGTGCGCGTGGATTTCAGAAGGAAATGTG--TGGGGCAGATT-GGGCTTTAGGTGAGGTA------------------GGTCCCGTATTTGCATACCATTAAGTGC---ACACATGATGAGTCTTCTCAAGTTTCT------------TCTACGCCAGATTCA-ATATGTGCGTGTGTATGGATGTGTG------TATGTT-TATGTGTC-GGTTCTTATCCATG-TTTTG-TCATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275060 217 -  1189296 GTTTTTGGGTGGA----------------AGACAAAAAGTATCATGTTTC-AAAGC------ACAGTGCGCGtggatttcagaagaaaatgtg--tgGGGCAGATT-GGGCTTTAGGTGAGGTA----------------GGGGCCCCGTATTTGCATACCATTAAGTGC---ACACATGATGAGTCTTCTCAAGTTTCT------------TCGACGCCAGATTCA-ATATGTGCGTGTG-------------------------TATGTGTCGGGTTCTTATCCATG-TTTTG-TCATCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3988647 218 +  4147112 GTTTTTGGGTGGA----------------AGACAAAAAGTATCATGTTTCAAAAGC------ACAGTGCGCGTGGATTTCAGAAGGAAATGTG--TGGGGCAGATTGGGGCTTTAGGTGAGGTG----------------AAG---CTGTATTTGCATACCATTAAGTGC---ACACATGATGAGTCTTCTCAAGTTTCTAA----------TTTACTCCAGATTCA-ATATGAGCGTGTG-------------------------TATGTGTC-GCTTCTTATCCTTG-TTTTGCCCATCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   229792 194 -   357190 GTTTTCAGGTGGA------------------AGAAAACGTATCATGTTTC---AGG------ATAGTGCGCGTGGATTTCAGAAGAAAATGTG------GCAGATT-GG------AAGGAGGTA---------------------------TTTGCATACCATTAAGTGCACTACATATGATGCGTCCTCTCGAGTTTCT------------TTTGCGTAATACATACATATATACATG---------------------------TATACGAT-GATTTTTATCCCAAATTTTG-GAATCA
i caeJap4.Scaffold17990 I 2325 I 73

a score=-407.000000
s ce10.chrX              5734190 1 + 17718866 A
s cb4.chrX              11061013 1 + 21540570 T
i cb4.chrX              C 0 I 1082
s caeRem4.Crem_Contig0   2435366 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275277 1 -  1189296 G
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3988865 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   229986 73 -   357190 I

a score=2019.000000
s ce10.chrX              5734191  9 + 17718866 CACAAGAAA-
s caeRem4.Crem_Contig0   2435367  9 -  4500979 CATAATAGA-
i caeRem4.Crem_Contig0  C 0 I 304
s caeSp111.Scaffold626    275278 10 -  1189296 CATAATAGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3988866 10 +  4147112 CATAATAGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   229986 73 -   357190 I
e cb4.chrX              11061014 1082 + 21540570 I

a score=2264.000000
s ce10.chrX              5734200 43 + 17718866 TATT-AATATTGTTTATTCATAAAATGGCTCA-TCAATAATTTTG
s caeSp111.Scaffold626    275288 44 -  1189296 TGCG-AGTATGTTGGCTCTAGTTATTGTTTCATCCAATAATCTTG
i caeSp111.Scaffold626  C 0 I 250
s caePb3.Scfld02_0       3988876 44 +  4147112 TGAGAAATACGTATTCTTCAGTTATTGTTTCA-CGAATAATCTTG
i caePb3.Scfld02_0      C 0 I 1078
e caeJap4.Scaffold17990   229986 73 -   357190 I
e cb4.chrX              11061014 1082 + 21540570 I
e caeRem4.Crem_Contig0   2435376 304 -  4500979 I

a score=0.000000
s ce10.chrX              5734243 1724 + 17718866  
e caePb3.Scfld02_0       3988920 1078 +  4147112 I
e caeJap4.Scaffold17990   229986   73 -   357190 I
e cb4.chrX              11061014 1082 + 21540570 I
e caeSp111.Scaffold626    275332  250 -  1189296 I
e caeRem4.Crem_Contig0   2435376  304 -  4500979 I

a score=160.000000
s ce10.chrX              5735967 3 + 17718866 AAC
s caePb3.Scfld02_0       3989998 3 +  4147112 AGC
i caePb3.Scfld02_0      I 1078 C 0
e caeJap4.Scaffold17990   229986 73 -   357190 I
e cb4.chrX              11061014 1082 + 21540570 I
e caeSp111.Scaffold626    275332 250 -  1189296 I
e caeRem4.Crem_Contig0   2435376 304 -  4500979 I

a score=302.000000
s ce10.chrX              5735970 2 + 17718866 AT
s cb4.chrX              11062096 2 + 21540570 AC
i cb4.chrX              I 1082 C 0
s caePb3.Scfld02_0       3990001 2 +  4147112 AT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   229986 73 -   357190 I
e caeSp111.Scaffold626    275332 250 -  1189296 I
e caeRem4.Crem_Contig0   2435376 304 -  4500979 I

a score=3489.000000
s ce10.chrX              5735972 10 + 17718866 TGGAAAATCG
s cb4.chrX              11062098 10 + 21540570 TGAAAAATCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435680 10 -  4500979 tggaaaatca
i caeRem4.Crem_Contig0  I 304 C 0
s caePb3.Scfld02_0       3990003 10 +  4147112 CTGAGAATCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   229986 73 -   357190 I
e caeSp111.Scaffold626    275332 250 -  1189296 I

a score=8583.000000
s ce10.chrX              5735982 68 + 17718866 GTGAGCTATGA-AAAGTACTCTTAAATTTTGTACAAAA-TATAATCGTATTTTTTCAGCTTAG-CTGACT-C
s cb4.chrX              11062108 68 + 21540570 GTGAACTATAA-AAAGTGCATTTCGATACGATGGAAATCTCTGATCATGTTATT-AAGTTTAG-CTGACTG-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435690 57 -  4500979 GTGAACTATAAGAAAGTGC--TCTGTTCTGGTGGGGTT------TTATATAATT----CTCAG-CTCACT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275582 68 -  1189296 GTGAACTATAAGAAAGTACG-TTTAACAAGATGAATACTTTTGATCATGCTTTC-CAGCTTAG-CTGATT-C
i caeSp111.Scaffold626  I 250 I 1
s caePb3.Scfld02_0       3990013 68 +  4147112 GTGTACTATAAAAAAGTGC--TTTCTTACGATGAAATTTTCTGGTCATGTTTTT-CAGCATCGTCTGATT-C
i caePb3.Scfld02_0      C 0 I 34
e caeJap4.Scaffold17990   229986 73 -   357190 I

a score=-1040.000000
s ce10.chrX              5736050 37 + 17718866 -TCAGCACTATATATGTCCTTTGAGAGCTGACATTGAC
s cb4.chrX              11062176 38 + 21540570 TCCGTTATACACCACATTCTCGAAAGACAGAAACTGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435747 31 -  4500979 TCTTTCTTCTATCATAATCTCT-------TACATTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275651 37 -  1189296 -TTTCCACTAACCAACGTCTCAGAAGACGAAGGTTGAG
i caeSp111.Scaffold626  I 1 C 0
e caePb3.Scfld02_0       3990081 34 +  4147112 I
e caeJap4.Scaffold17990   229986 73 -   357190 I

a score=31622.000000
s ce10.chrX              5736087 173 + 17718866 ---------TCACAATGGTTGTACA--TTCTTGG--AA-------TTCTCAGCTAAAGAGCAACAATCACTGCGGTAATTAAAAAAGAGAAACATTGTTG-ATGCT-AAA------TGTGCATCTTGAAGCGGAAAAATAAGAATA--------GAAT------------------------------------------------------------------------GACAATC---TTAT--------TGGCGTGAGGCGGCAGAAAAACCAGAAACGTTTTGACGCA
s cb4.chrX              11062214 254 + 21540570 TCAGTGTGTGAAACAGGACGGGAATTTTTCTCAG--AGA--------GTCAGCTAAAGAGCAACAATCACTACGGTAATTAGAAAG--ACAACATTGTTG-TTGCTCAAA------CGTGCAACATGAAGCGgaaaga-----ataaagaagaagaagaaaaaagagaaaaagaagaagaataagaagaataagaaaaagaagaagcagcgaaaggaaaagGATTCGAGTGGCAATC---TTATTTCTTCTGTAT----AGGCGACGA-------AGAGTCGTTTCGACGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435778 170 -  4500979 ACAATATGCTCGAGATAGTTGCTAAATTTCTAAG--AA-----------------------AACAATCACTACGGTAATTAGAAAAT-ACCGCATTGTTG-TTGCT-AAA------TGTGCAACATGAAGCGGAAAGA-----ATGAAGGGGATAAAA-------------------------------------------------------------------CGAGTGGCAATC---TTATTTCTTCTGTACTGCGAGTCGAC-------------TCGTTTCGACGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275688 169 -  1189296 ---------TCAAGATGGTCGTAA---TTCTTGATTAAATTCcccttttcag-aaaagagtaACAATCACTACGGTAATTAAAAAG--ACAACATTGTTG-TGGTT-AAA------TGTGCAACGTGAAACAGAAAGATGGGTACG----------AA------------------------------------------------------------------------GGCAATCCCTTTGTCGTTTCTGTAGTCCGACTCG------------------TTTCGACATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3990115 186 +  4147112 ---------TCAAGATGGTTGTAAAATTTCTTGattaaa------ttttcagcaaaagaGCAACAATCACTACGGTAATTAGAAAG--ACAGCATTGTTGATGGCG-AAACGTGTGTGTGCAACATGAAGCGGAAAAATGGGTACGAAGAATGGGTAA------------------------------------------------------------------------GGCAATC---TTCTTATTTCTGTATAGCGAGTCGAG-------------CCATTTCGACGTT
i caePb3.Scfld02_0      I 34 C 0
e caeJap4.Scaffold17990   229986  73 -   357190 I

a score=46237.000000
s ce10.chrX              5736260 52 + 17718866 TTG----------------CCACCTTTGACTTGAAC----TAATTACACGAAAGGATTATGAAGG---AAAACAA
s cb4.chrX              11062468 69 + 21540570 TCGTTCTCACGTTTCACCACCACGTTTTGCTTGAGC----TAATTACACGAAAGGATTATGAATG--AAAAACAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2435948 68 -  4500979 TCGTTTTCACGTTTTTACACCACGTTTTGCTTGAAC----TAATTACCCGAAAGGATtatgaaag--aggaa-aa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    275857 69 -  1189296 TTGTCTTCACGTTTCCATACCACGTTTTGCTTGAAC----TAATTACACGAAAGGATtatgaagg--aaaaacaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3990301 71 +  4147112 TCGCCTTCACGTTTCTACCCCACGTTTTGCTTGAAC----TAATTACACGAAAGGAttatgaaggaaaaaaacaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   230059 56 -   357190 ----------------TTACCACGTTTCACTTGAACTAATTAATTACGTGGAGGGATTATGAAGG--Caaaaaa-
i caeJap4.Scaffold17990 I 73 I 9587

a score=-4923.000000
s ce10.chrX              5736312 130 + 17718866 TGTATAATGTGTTT-GTGTCTTTACTCAAACGGTGA--------------AAAGGAAGTTTCA--------ACCATCG--------------TGTTTTTTTTTCAACGGGGGTGTGTCTATATAGATTTTTTCTTCTTCAAAATAAAATTTGAATTTGAAATTGAAA-
s cb4.chrX              11062537 148 + 21540570 AGCACACTGTTTTT-GTGTCTTTACTCAAACGGGAAAGGAAGGGACGAGAAAAGGAAGTTTCGCGTGACATACTACAA--AGGCttttttctttactttgttttt---ATGGt-tcttagatt-------ttc-----agagaaaaatattaaagttTAATTTCAAA-
i cb4.chrX              C 0 I 141
s caeRem4.Crem_Contig0   2436016 120 -  4500979 aataCATTGTGTTT-GTGTCTTTACTCAAACGGGAATG------------AATGGTTGTGTCACGTGACATACTA-----------------TTATTGTGTTTCTTCGAGGGT-GGTGTGGGT----------------GAGGGGACTACTGAATATCTATTATAGA-
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    275926 141 -  1189296 aacacaaTGTGTTT-GTGTCTTTACtcaaac------ggaa---------aaaagaagtttcacATGACATACTAGGAGCCTCTCcgtttttagattttctaTCT-----GAT-TCTCTAAGTCAGTTTTTGC-----AAAAGTTAAAATATAttatgaataaaagaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3990372  82 +  4147112 aacacaatgTGTTTCGCGTTTCTACTCGAACCGATAAGAAA---------GAAGGAAGTTTGAGATTGTGAACTGTAA-------------------TTATATct----------------------------------------------------------agaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I

a score=-23951.000000
s ce10.chrX              5736442 202 + 17718866 ATCGTATAGTCGAACTG--------CAATTTGAT------TGATAATTTAAGAAAGGTCACAAAA-----GTGTACGTAGTCGTTTGATT---GAGGAATTGGACATGACATTTTTAAATTTAGAAAAAAACATGTAGAAAACAAAAATCTGATTGTAAAATAATC---CTAA---------------------------------------------TGTGCA----------------------TATATACATAAATGGTATTTTACCCGAGAAAACATGCAGCTCGAGGCA--
s caeRem4.Crem_Contig0   2436138 274 -  4500979 ---ACAATTGCAAACTGAGTCCTTGCTGCTTTACGAAAGATGGAAATTGTAGGATTAGAACAAAAcgttgaagaaaatgaatttttggatACAAAAAAGGCCACGATTACATTTACagattggaaaatg---------aaaacataaaat---ataaaaactgacatttctagaaaaatctgAAGTACGGAGCTGTAAATACAGAACTCAGAAATGGTTTTACAATGGCTTTTTCTTTGAGTTTATTGGATG-ATTAATGTGTCTAGACCCTAGAATACATA------GCGACATC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    276067 203 -  1189296 -------------actG-GTCGGATCAA----ATGGAACATGAAGGGATTAAAATAACTGAGAAA-----GAGCAAAGGGACATGAGGTATCAGGAGAttctaaaaagaaattttgaaatcgaagTATACAGA---CTAGAACAGAGAATGCTATGAGGTATGATA----TAG----------------------------------TCACAAAGAGAATTCAA----------------------CTAATG-ATCAATGTGGTTATACCCAAAAATACATA------AAGACATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3990454 152 +  4147112 -------------ac------------------------------------------------------------aagagaaactTAGTAACAACAGACTGTGAAAAACCTTTCTT---cctaataataataa---aaaaatcaaaaaacaaaataagaatTGAAA---CTAG------------------------------------ATTAagacattttca-------------------ttttttata-aataatGCGACTAGACCCAAGAATGAATA------TGGCCGTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062685 141 + 21540570 I

a score=77003.000000
s ce10.chrX              5736644 153 + 17718866 TTGGATAACCACAAGCAGACGAATTAGTATAATGAGAGACGTTTTGAGAAAAAGATAGAC--------------GGACAACGGCGTGTGCTGCAACAAAC----GAC-AAACGCG---CGTCTTT-GCAATATTA--CGCGGGCGACAAAGTATTTGAATCAAGT--TGTTGCAAGTTTT
s cb4.chrX              11062826 168 + 21540570 CTAGATAACCCATAACAGACGAATTAGTATAATGAGAGGCGTTTCGAG-AGAAGAGACATACATTCACATACACGAACAACGGCTCG--CTGCGACGCTTCTTTGAC-AAAGGCGGCTCATCCTCAGCAATAAGA--C----GCGTCAAAGTATTTGATTCAAGT--TGTTGCAGGATTT
i cb4.chrX              I 141 I 7183
s caeRem4.Crem_Contig0   2436412 149 -  4500979 TTAGATAACCACAAACAGACGAATTAGTATAATGAGAGGCGTTTCGAG-AAAAGGGACAT--------------GGACAACGGCTTG---TGCAACCGCCC---GAC-AAAGACA---CATCTTTAGCAATAAGA--C----GAGCCACAGTGTTTGAATCAAGTTGTGTTGCAGGATTT
i caeRem4.Crem_Contig0  C 0 I 4377
s caeSp111.Scaffold626    276270 149 -  1189296 TCAGATAACCACAAGAAGACGAATTTGTATAATGAGAGgcgttttgag-aaaagacaCAT--------------GAACAACAGCTCT---TGCAACGCTC----GACAAAAGGCG---CATCTTCAGCAATAAGATGC----GCGCCAAAGTATTTGAATCAAGT--TGTTGCAGGATTT
i caeSp111.Scaffold626  C 0 I 3321
s caePb3.Scfld02_0       3990606 146 +  4147112 TTGGTTGACCAGAAGCAGACGAATTAGTATAATGAGAAGCGTTTCGAG-GAAAGAGAAAC--------------GGACAAGGGCTCA---TGCAATGTCC----GAC-AAAGGCG---CATCTTTAGCTATAAGA--C----GCGCCAAAGTGTTTGAATCAAGT--TGTTGCAGGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I

a score=171.000000
s ce10.chrX              5736797 22 + 17718866 TGATACAACCTAGGAAGCATTA
s caePb3.Scfld02_0       3990752 21 +  4147112 AGA-AGATTTTATGAGGTATTA
i caePb3.Scfld02_0      C 0 I 2517
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I
e caeRem4.Crem_Contig0   2436561 4377 -  4500979 I

a score=0.000000
s ce10.chrX              5736819 325 + 17718866 TCCTCGTTAACAAAAATGAAAAAATGAAAGTACAATGATTGGCCAAAATTATGATAACACATTTTCAGAAGCGTAGTGATCGTTATAGACATAATTAGAAGTCTATCCTAATAATTTCCATTTTTTCCTAAAATCTCTGAACATTTTAGAAGTTTAAAGTGATCTCATCTGCAACCTAGTTACTTTTCAAAATGTTTTCTTTTGAACGGTATATTTCAGTTTCAAAAATTGTGCTAAAATACTTCCAACTTGAAAAATATACATCAACATCAAATTTGTATGTTTAGAACAAACTTTAAACTAATATTTAAAAAAAACGAACATC
e caePb3.Scfld02_0       3990773 2517 +  4147112 I
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I
e caeRem4.Crem_Contig0   2436561 4377 -  4500979 I

a score=4026.000000
s ce10.chrX              5737144 101 + 17718866 GTAAAAAGATACCTGAAATGACATCAGGTGAAATGTTTCTGATTGTGAGCATAAAAATACGCATTGCCTGATTTACGTTTGACACCAAATCAAAATGCATT
s caePb3.Scfld02_0       3993290  98 +  4147112 GCAAAACGCCATCTGAAATGACATCAAGcagtgtattttt--tttttgata-aaaaataggCAATGCCTGATTTACATCTAACATCAACTCAAATTCCATT
i caePb3.Scfld02_0      I 2517 I 2464
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I
e caeRem4.Crem_Contig0   2436561 4377 -  4500979 I

a score=0.000000
s ce10.chrX              5737245 1466 + 17718866  
e caePb3.Scfld02_0       3993388 2464 +  4147112 I
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I
e caeRem4.Crem_Contig0   2436561 4377 -  4500979 I

a score=165.000000
s ce10.chrX              5738711 35 + 17718866 AAAAAATTGTTTTAGTTGATGAACGTTTTTATT----TC
s caeRem4.Crem_Contig0   2440938 37 -  4500979 aaaatatttatttag--aattattattttcatcgtcata
i caeRem4.Crem_Contig0  I 4377 C 0
e caePb3.Scfld02_0       3993388 2464 +  4147112 I
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I

a score=933.000000
s ce10.chrX              5738746 29 + 17718866 AAAACAATACAATTTGTTTT--TACCGGGTG-
s caeRem4.Crem_Contig0   2440975 30 -  4500979 aaaacaattcaaa-actttcagaaccGGATA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3995852 32 +  4147112 AAAACAATACAAACAAATTCAGTACCAGAATT
i caePb3.Scfld02_0      I 2464 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    276419 3321 -  1189296 I

a score=14093.000000
s ce10.chrX              5738775 124 + 17718866 ATGAACTTTTGATTCAAGGTACTGGGAT--AAATATGAATTCACTCGG----GCTCACTGACC--GGGATTTAGGCAAT---ACAACA-----------AAAACTAGACTGAAA--------AATTT--CAGAACTCAATTACTCGTGTGAGTTTT
s caeRem4.Crem_Contig0   2441005 136 -  4500979 -----TTCAAACTTTACAAGACAGGGATGGGAAACATTCTTCACTCGG----GTTC-TGTTCC--GGACCATCATAAAT----CAAtac--aataga--aaaagaaaaatgaaaaaaaaagtaaacgaACAGAACCCAATTACTCGTGGGAATTTT
i caeRem4.Crem_Contig0  C 0 I 176
s caeSp111.Scaffold626    279740 142 -  1189296 atgaaataacgGTTCTAGAGACcggga---aaaaagatgttCACTCGG--AGGTTC-TCGACCGGGGGCCACAATGAATATAATAATACTtaatgaaggagaagaaaaacgaaa--------atacGAAGAGAACCCAATTACTCGTGGGATTTGT
i caeSp111.Scaffold626  I 3321 C 0
s caePb3.Scfld02_0       3995884 136 +  4147112 TTATATTATCGGTTCACAAGACC-GGA---AAAAAGATGTTCACTCGGGTGGGCTC-TGGACC--GGGTCTCGATCAAT---AAAATActtaatgaa--acaaaaaaagggaaa--------atatgAACAGAACCCAATTACTCGTGGGAATTAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I

a score=1419.000000
s ce10.chrX              5738899 5 + 17718866 ACTCA
s caeSp111.Scaffold626    279882 5 -  1189296 ACTCA
i caeSp111.Scaffold626  C 0 I 222
s caePb3.Scfld02_0       3996020 5 +  4147112 ACTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeRem4.Crem_Contig0   2441141 176 -  4500979 I

a score=-1534.000000
s ce10.chrX              5738904  62 + 17718866 GGCCTGGGGGACTACGCTG-AGATCAAGT-GTTGGCAAAAAT------------------------------------------------------TGTACTATGTAAT-------------------AGGAAAAGA
s caePb3.Scfld02_0       3996025 135 +  4147112 AAC--AAAGAGCTACGTTACAGATCAAATTAttaagaaaaaggagagacaACTGATAGAATACAATGGGTTTCGAGAGAACGGATTGATACACGTATATGCAATGTGATTTACTAGATGATTTCTACGAGGAAAAGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    279887 222 -  1189296 I
e caeRem4.Crem_Contig0   2441141 176 -  4500979 I

a score=689.000000
s ce10.chrX              5738966 13 + 17718866 TGGAAAAACTGGa
s caeRem4.Crem_Contig0   2441317 13 -  4500979 tgaaaaatttgta
i caeRem4.Crem_Contig0  I 176 I 3
s caePb3.Scfld02_0       3996160 13 +  4147112 TAAACAAGTAGAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e cb4.chrX              11062994 7183 + 21540570 I
e caeSp111.Scaffold626    279887 222 -  1189296 I

a score=2093.000000
s ce10.chrX              5738979 7 + 17718866 ataatta
s cb4.chrX              11070177 7 + 21540570 ATAATTG
i cb4.chrX              I 7183 C 0
s caeRem4.Crem_Contig0   2441333 7 -  4500979 ATCATTG
i caeRem4.Crem_Contig0  I 3 C 0
s caePb3.Scfld02_0       3996173 7 +  4147112 ATGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   230115 9587 -   357190 I
e caeSp111.Scaffold626    279887 222 -  1189296 I

a score=391.000000
s ce10.chrX              5738986 3 + 17718866 tta
s cb4.chrX              11070184 3 + 21540570 TTT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2441340 3 -  4500979 TAT
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0       3996180 3 +  4147112 TTG
i caePb3.Scfld02_0      C 0 I 45
s caeJap4.Scaffold17990   239702 3 -   357190 ttg
i caeJap4.Scaffold17990 I 9587 C 0
e caeSp111.Scaffold626    279887 222 -  1189296 I

a score=155960.000000
s ce10.chrX              5738989 159 + 17718866 gttataaaataatatttGAAACTGCATTGAATGTGACCAGTGCATTGACAAACTGGAAATTTGTCAGATATTGCGAGATGATAACGGAAGACGTGATTGCCAAAATGCAGTATGGAGCCCAGAAGACCAAATTGAGGGAGAGCATGATAAAAGCCTAAA
s cb4.chrX              11070191 159 + 21540570 GTCACAGAATAATATTGGAAACGGCGTTGAACGTGACAAGAGCATTCACGAATTGGAAGTTGGTCAGGTATTGCGAAATGATCACCGACGATGTGATGGCTAGAATGCAGTATGGAGCCCAGAAGACGAGATTCAAGGAAAGCATAATGAACGCCTGAA
i cb4.chrX              I 4 I 10
s caeRem4.Crem_Contig0   2441355 159 -  4500979 GTTACAATATAATATTGGACACGGCATTGAATGTGACTAGTGCATTCACAAATTGGAAGTTCGTCAAATATTGCGAAATGATTACTGAAGACGTGATTGCAAGAATGCAGTATGGAGCCCAGAAGACAAGATTAAGTGAGAGCATAATGAACGcctgaa
i caeRem4.Crem_Contig0  I 12 I 15
s caeSp111.Scaffold626    280109 159 -  1189296 GTCACAGAATAATGTTGGAAACGGCGTTGAATGTAACCAAAGCGTTGACAAATTGGAAGTTCGTTAAGTACTGCGAAATGATTACCGACGATGTAATCGCTAGAATGCAATATGGTGCCCAGAAAACCAAGTTAAGAGATAACATGATAAATGCCTGGA
i caeSp111.Scaffold626  I 222 I 17
s caePb3.Scfld02_0       3996228 159 +  4147112 GTTACAAGATGATATTAGAAACTGCATTGAAGGTGACCAAGGCGTTCACAAATTGGAAGTTGGTCAAATATTGCGAAATGATGACTGAAGACGTGATTGCCAAAATGCAGTAAGGAGCCCAAAAGACCAAGTTGAGCGATAACATAATGAATGCCTAAA
i caePb3.Scfld02_0      I 45 C 0
s caeJap4.Scaffold17990   239705 159 -   357190 gttACAAAATAATATTGGAAACAGCATTAAAAGTGACTAAAGCGTTAACAAACTGAAAATTGGTCAAGTATTGCGAAATGATGACGGATGACGTGATGGCCAGAATGCAGTAGGGTGCCCAGAAGACCAGGTTGAGAGACAACATAATGAATGCCTAAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-2519.000000
s ce10.chrX              5739148 6 + 17718866 TTCAG---A
s cb4.chrX              11070360 9 + 21540570 TCTGGGGTG
i cb4.chrX              I 10 C 0
s caePb3.Scfld02_0       3996387 9 +  4147112 GACaagaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   239864 6 -   357190 -TCAGGA--
i caeJap4.Scaffold17990 C 0 I 33
e caeSp111.Scaffold626    280268 17 -  1189296 I
e caeRem4.Crem_Contig0   2441514 15 -  4500979 I

a score=914.000000
s ce10.chrX              5739154 9 + 17718866 TTTAAAACT
s cb4.chrX              11070369 9 + 21540570 CTggatatt
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       3996396 9 +  4147112 ttggaaact
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold17990   239870 33 -   357190 I
e caeSp111.Scaffold626    280268 17 -  1189296 I
e caeRem4.Crem_Contig0   2441514 15 -  4500979 I

a score=-4833.000000
s ce10.chrX              5739163 396 + 17718866 CACATTT----------GTTACT-ATGTTCGATGTAAAGaaactgcgtggtacgaacatttccagaaatttaggacccgtcttttttgggacctttccaggaaaaggtcaaaatctcaagggtaggtaatatccttgcccgacatctcacgcgttccgcgccctggtttgtttacttctagcatagtggggcgcggaacccgtgtgctgtgagcatgagcgtgagctttgatattggttgggtcaacatttttattttacctcAAAAAAGTACTCAAAAATCTCTAACTTTTGGAATCTATGAATCACGCCACGTCACACCACTACACGCCATGCAATTTCTTTATTCCGAGTGTATAT-GCGCAGTTAATTTTCT----ATGTACGCATAATGCTTTAGTGGGCTTTTTTC
s cb4.chrX              11070378 252 + 21540570 gaaatttttgaaatctggttATTCAAGTTTGTTTTCGGTGCACTGTGCAg-----------ccagatgttt----tttttccgttttgaaa-------aagaaagaagagcagctttagagat---------------------tttcaactgttcca--------ttttttca--------ataat----------------------------------ttagtTTTGA-ATTGCTTA---------TTGTATTTCATCAGCAGACGACCCATAAAAAATTGTAACC----GATTCTAAAA--------------------------------------------CTGAGTGTTTTTTGGGTCGTAAATTCTCTTCAGCCGTCCTTACAATGTACTAAAA---------C
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3996405  22 +  4147112 I
e caeJap4.Scaffold17990   239870  33 -   357190 I
e caeSp111.Scaffold626    280268  17 -  1189296 I
e caeRem4.Crem_Contig0   2441514  15 -  4500979 I

a score=91.000000
s ce10.chrX              5739559 1 + 17718866 A
s caeRem4.Crem_Contig0   2441529 1 -  4500979 a
i caeRem4.Crem_Contig0  I 15 C 0
e caePb3.Scfld02_0       3996405 22 +  4147112 I
e caeJap4.Scaffold17990   239870 33 -   357190 I
e cb4.chrX              11070630 0 + 21540570 C
e caeSp111.Scaffold626    280268 17 -  1189296 I

a score=434.000000
s ce10.chrX              5739560 12 + 17718866 -----TAAAAAATAATT
s cb4.chrX              11070630 12 + 21540570 -----CAAATAAGTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2441530 12 -  4500979 -----taGGAAATAATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    280285 17 -  1189296 TAAAAGATGACAGAACT
i caeSp111.Scaffold626  I 17 C 0
e caePb3.Scfld02_0       3996405 22 +  4147112 I
e caeJap4.Scaffold17990   239870 33 -   357190 I

a score=-1882.000000
s ce10.chrX              5739572 2 + 17718866 -AT
s cb4.chrX              11070642 2 + 21540570 -TA
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2441542 2 -  4500979 -TT
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    280302 2 -  1189296 -TT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   239903 2 -   357190 AT-
i caeJap4.Scaffold17990 I 33 C 0
e caePb3.Scfld02_0       3996405 22 +  4147112 I

a score=93034.000000
s ce10.chrX              5739574 98 + 17718866 TACCTTCCACCGAGCGTTCCGGCGTGCTGTATCCACTGTGACCACCCAGAGAGTGTTTGATCGAGCACTCGCTGGAGCGCTTTGCCTTCGTGCTG-AAA
s cb4.chrX              11070652 99 + 21540570 TACCTTCCACCTTGCATTCCTCCGAGCtgtatctacagtaaccacccACATGGTGTTGGATCGAGAACTCGCCGGAGCACTTTGTCGACGAACTGTAAT
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2441550 98 -  4500979 TACCTTCCACCGTGCATTTCTGCGGGCAGTATCTACAGTAACGACCCAAAGTGTGTTGGACCGAGAACTTGCAGGAGCACTTTGTCgtcgaactg-aaa
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    280304 98 -  1189296 TACCTTCCATCGAGCATTTCTCCGCGCAGTGTCTACAGTGACCACCCAAAGAGTGTTTGAACGAGCACTAGCTGGAGCACTTTGTCTTCgcactg-aaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3996427 98 +  4147112 taccttccACCGAGCATTTCTTCGAGCTGTGTCTACAGTAACTACCCAAAGGGTGTTGGATCGAGCACTCGCTGGAGCACTTTGTCGTCGAACTG-GAA
i caePb3.Scfld02_0      I 22 C 0
s caeJap4.Scaffold17990   239905 98 -   357190 TACCTTCCACCTTGCGTTTCGACGCGCTGTGTCCACAGTAACCACCCACATTGTGTTCGATCGAGCACTTGCCGGAGCACTTTGACGACGCACTG-AAA
i caeJap4.Scaffold17990 C 0 I 1720

a score=21716.000000
s ce10.chrX              5739672 156 + 17718866 ATATGAATCG-TTAC-ACAGGAATAAAATTTGAAAGAAAATATAACTTTCTTTT---------------AAGTTAAAACTTTCTGTCGAACATAGACAT-TAAACAAAGCTTGTCGGGAAAAAAAGAATAGCACTTAATAATAGGGAACTTAAATACCCGTGCAT-------------TTGGGATAG
s cb4.chrX              11070751 156 + 21540570 AT-TTaacaaataaa-acag----aaatcttgaaactgaaaaacgttttg------------------aaaaacaaaacatttttcggaaaacggaaatttgaacaaaGCTGCTAGGG---AAAGTTATAATACTGAATAATAGGGAGCATAGGTAACCATGCGTGACTCA----TCTTTGGGATAG
i cb4.chrX              C 0 I 12
s caeRem4.Crem_Contig0   2441648 168 -  4500979 at-taactaAATGAACACag-------ttttttctcggaaaaagGCTTTGTATGGTTCGTTTTCAAACCAAAACAAAGTCCTTTTCAG-GAACGGACATATGAACAAAGCTTCTAGGG---AAAGGTAAAATACTGAATAATAGGGAACAGAAATACCCATGCATGA---G----ATTTTGGGATGG
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    280402 113 -  1189296 a--tgattaa---aa-atag-------------------------------------------------aaattga------tgaCCAAGAACGGGCATTGAAACAAAGCTTCTAGGG---AAAGGTTTTATACTTAATAATAGGGAACATAAATACTCGTGCATG---------ACATTGGGaaa-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3996525 131 +  4147112 A--CAATTGAagtaa-acaa-------------------------------------------------aaatcaaaccgATTAACGGAGAACGGACATAGAAACAAAGCTTCTAGGG----AAGGTATAATACTGAATAATAGGGAACATAAATACCCATGCGTGATTTATATCATATTGGGATAG
i caePb3.Scfld02_0      C 0 I 44
e caeJap4.Scaffold17990   240003 1720 -   357190 I

a score=-4026.000000
s ce10.chrX              5739828 13 + 17718866 -AGATC---ACAA---------AAAA
s cb4.chrX              11070919 13 + 21540570 TGTCTTTGGACAT-------------
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2441823 10 -  4500979 TGATTT---ACGC-------------
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    280515 18 -  1189296 -atttt---acattttttaaaa----
i caeSp111.Scaffold626  C 0 I 4
e caePb3.Scfld02_0       3996656 44 +  4147112 I
e caeJap4.Scaffold17990   240003 1720 -   357190 I

a score=-3277.000000
s ce10.chrX              5739841  76 + 17718866 GCCTCATAAT-----GTTTTT-----------GTTTTGAAACTTGC-----------TGCTCCAATAGGTATTACATGCTG-TTTTACACGTGTCA--TATTCTCA
s cb4.chrX              11070932  77 + 21540570 ---TTTGAACAG---ATTTAAAAGGAACATTGGAACATATG----------------GGTACTCGTACGATTCACGTGCTGTTTTCA-------CGTTTTGTCCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2441833 103 -  4500979 ---TTTTAATAATGTATTTGTTAACATAATCAGGTCTtatgcttttttttcagttcccaTGCTGATAACGTCGACATGCTGGATTCACTGATTCCATTTATTCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    280537  81 -  1189296 -ccTTTTCAC-----GTTTCTGTA--------GTTCCCATGCTCAT-----------AATAATATCACGGTCCACATGCTGGTTCCATTAATTCATCCTATTCCTA
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       3996700  88 +  4147112 ccattttcactgtttgtttttcaac-------tttcccaTGCTTTT-----------CATATGGTTACGGTCCACATGCTGGTACCACTTATTCCAGTTATTCCTA
i caePb3.Scfld02_0      I 44 C 0
e caeJap4.Scaffold17990   240003 1720 -   357190 I

a score=175971.000000
s ce10.chrX              5739917 356 + 17718866 TTTCTACCTTCTCCCTTTGTCAGG------TTTGGTAACCGAAGCTCTGTTTTATGTCCGTTGAAATGAACTGAACCTTCTGATCCGTTGTGGAACAGGTCTAACAGGAAATTCCACACTCGACGCTTGAAAGC---TTGCG---TTCTGGTTTCAGGTTCCTG------CTCTTGTGGGGTCACTTCAGGTCTTGTCGCTGCTGAACTTGGAAAACGtttttttaattaaaaaaaaagaaatatt-------------GAT--CTTACCAGTAGCTGAGCCATTTTCGTCAATGCATACTGTAAGACTAGATGAGTTTTTAATTCTCATTGGTACATCTACCGATGCAGCTCGCCGACGTTCCATATCGCCTGAATAAATTTGCTT-------TT
s cb4.chrX              11071009 362 + 21540570 ATTCTACCTTCTCCCTTTGTCAGT------TTTGGCAATCGCAACTCTGTTCTATGTCCTTGGAAATGAACAGAACCTTCTGATCCGTTGTGGAATAGATCCAACAGGAGATTCCAGAATCGTCGAAGACATCC---CTCCG---GTTCTGTTTCTGCTGGTAGAGCAGGAGCTGCTGCTAAAATTTCTGGTCTTTTGGCCGCTGGA-----AA--------------TAAGAAGTACAATGTCTG-CTTGATGGTGGCATT--TTCACCTGTAGCGGATCCATTTTCATCAAGGCATACTGTAAGGCTTGATGAGTTTTTCATTCTGGATGGAACATCCACAGATGCCGCTCTTCTTCGCTCCATGTCGCCTGaaatgttttgtttaaaaagttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2441936 355 -  4500979 ATTCTACCTTCGCcctgtttcaat------tttgataatCGCAGCTCTGTTTTATGTCCGTTGAAATGAACAGAACCTTCGGATCCGTTGTGAAATAGATCCAGTAACAAATTCCAAACTCGTTGAAAACATCC---CTGAA---GCTTTGTCTGTGGTTCCGG---------TTCCGGCGGCACTTCGGGTCTCGTGGCTGCTATA-----AAAATG--ttatgttgaaaaaatgacgacaTGTA-ATTGATGA----ATT--ACTACCAGTCGCTGAACCATTTTCATCAAGACACACAGTTAAACTAGATGAGTTCTTCATTCTCATTGGAACATCCACCGACGCAGCTCTCCTCCGTTCCATATCGCCTATAA----TTGGGCATAAG--TT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    280618 354 -  1189296 TTTCTACCTTCTCCCTTTTTAAGT------CTTGGTAACCGCAGCTCTGTTTTATGTCCATTGAAATGAACAGAACCTTCTGATCCGTTATGGAATAGATTGAGCAAGAAGTTCCACACTCGTTGCCAGTATTT---CTGTA---TTTCTGTCTGCGGTTCCTG------TGCTGGCGGTGTTGTTTCTGGTCTTGTTGCTGCTGAA-----AA---------TGAGTTCaccagttttcaatttatctTGGCCC----TTTGACTCACCAGTTGCTGAGCCGTTCTCATCAATGCAAACTGTGAGACTGGACGAgttcttcattctcattgGAGCATCAACAGACGCGGCTCTCCTCCGCTCCAGATCGCCTTTAA----TTACACTTTTG--TT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3996788 360 +  4147112 ATTCTACCTTCtccctttttgagt------tttggaaacCGCAGCTCTGTTTTATGTCCGTTGAAATGAACAGAACCTTCTGATCCATTATGAAATAGATCGAGTAGACAGTTCCACACTCGTTGCCAACATCC---CTGTAAACCTCCAACTGGTTGTTCCGG---CTCTGGTGGCGGCGGCGCTTCGGGTCTCGTGGCCGCTGAA-----AA------GTGTAAATTGAGAATGATGACATCTA-ATTGGCGT----GCT--CCCACCAGTTGCGGATCCATTCTCGTCTATACACACTGTGAGACTAGATGAGTTTTTCATCCTCATCGGAACATCCACAGATGCTGCTCTCCTACGCTCCATATCGCCTATAA----TTGGATACTTA--TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   241723 320 -   357190 TTTCTACCTTCagattttgtcaattttcgcTTTGTTAACCGCAGCTCTGTTTTCTTAACGGTGAAGTTAACAGAACCTTCAGATCCAATATGGAAGATGTCCAGGATAAAGTTCCAAATGCGTTGGAAAAATCCAGACTGCG---TCGTTGT------------------TGCTGTTGCCGCTGGCTCAGGATCCGTTGGCTCCGCG-------------TTGT------------------TCCG-------------CTT--GGCAGCTGTTGCGGACCCGTTTTCATCAATGCACACCGTCAAACTCGACGAGTTTTTGATCCGCATTGGAACGTCTACTGACGCTGCTCTTCTACGCTCCATGTCACCTATAA---TTTGGATTTT------
i caeJap4.Scaffold17990 I 1720 I 37

a score=-10865.000000
s ce10.chrX              5740273 36 + 17718866 CTTG-TATTTATCTTCAA----ACCAC----------------------ACACAAAAAAAACA-
s cb4.chrX              11071371 60 + 21540570 acta-aagttttgaatagcaaaattgaaaagcaaatggaaaaagaaattattc---taaaacac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2442291 35 -  4500979 ATTA-AAAGTGTATGTGG----GTTGA---------------------TACAC---TACAacat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    280972 34 -  1189296 TTCGCATTATTCATTAAA----AGTAC----------------------TCTC---TACAACA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3997148 33 +  4147112 GTTG-ATAGGAAATTTAA----TTTGA----------------------ACTC---TACaaca-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   242043 37 -   357190 I

a score=145514.000000
s ce10.chrX              5740309 171 + 17718866 AAGGAAA----CCAAAAT-AAACCAAACACTCACAACTTTTACCTTCCGGCGCGATGTTCTGCAGTCGTTTCGTTTTAGAAGGAACACGGGCCATCAAATTGTCGGATTCTTGTGTAACATTTGACTCGATTGGAGACTCGTGTTGCCTTGCACGTTTACAGCAGCAGAAACTAAA
s cb4.chrX              11071431 175 + 21540570 aaaaaaaaaaccaaaaat-gaaccaaaCACTCACAGCTTTTACCTTCCGGTGCTATATTTTGCAGTCTTTTTGTCCAAGATGGAACCCGAACCATGAGATTGTCTGATTCCTGAGTGACATTCGACTCGATTGGTGAATCACGCTGTCTTGCACTTTTGCAACAACAGAATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2442326 171 -  4500979 aaaaaaa----caaaaga-gaacCAAACACTCACAGCTTTTACCTTCCGGGGCTATATTCTGTAACCGTTTGGACCGGGATGGTACCCGAACCATCAGGTTGTCAGATTCCTGTGTAACGTTTGACTCAATCGGAGAATCACGTTGTCTAGCACTTCTACAGCAACAGAATCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281006 168 -  1189296 AAGGGAA----CAGAAAA-GAACCAAACACTCACAGCTTTTACCTTCCGGAGCAATATTCTGCAACCGTTTGGTTCTTGATGGCACCCGAACCATCAGATTATCCGATTCCTGAGTCACATTTGACTCGATTGGCGATTCAC---GGCGTGCACGACCACAGCAACAGAAactgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3997181 169 +  4147112 aaggaaa----caaaaaaggaaccaAACACTCACAGCTTTTACCTTCCGGAGCTATATTTTGTAGCCGCTTCGTCCTAGACGGCACACGAACCATCAAGTTATCAGATTCTTGGGTCACGTTTGACTCGATTGGGGAGTCACGTTGGCGAGCACG---ACAGCAACAGAACCTAAA
i caePb3.Scfld02_0      C 0 I 90
s caeJap4.Scaffold17990   242080 171 -   357190 aagaaaa----ccaaatg-aaaccaaacACTCACAGCTTTTACCTTCCGGTGCAATGTTTTGCAACCGCTTTGTTCTCGATGGCACCCGTACCATAAGATTGTCCGATTCTTGTGTAACATTTGATTCCAGTGGTGACTCGTGGTTTCTAATTCTTGTGCAGCAACAGAATCTGTA
i caeJap4.Scaffold17990 I 37 C 0

a score=91.000000
s ce10.chrX              5740480 1 + 17718866 A
s caeJap4.Scaffold17990   242251 1 -   357190 A
i caeJap4.Scaffold17990 C 0 I 36
e caePb3.Scfld02_0       3997350 90 +  4147112 I
e cb4.chrX              11071606 0 + 21540570 C
e caeSp111.Scaffold626    281174 0 -  1189296 C
e caeRem4.Crem_Contig0   2442497 0 -  4500979 C

a score=-3706.000000
s ce10.chrX              5740481 35 + 17718866 GTTTATTATGCTTAAG--------GTTCATTCAAT---------GCAATTTT
s cb4.chrX              11071606 25 + 21540570 -------TTATTTTGG--------GCTCA---AGT---------GAGTTACT
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2442497 40 -  4500979 AggtattttgtttttgtaaacGACACTAA---AAT---------GGGATTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281174 34 -  1189296 ------ttgatttttg--------aatcg---aattTAATGTTCGAAATTC-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3997350 90 +  4147112 I
e caeJap4.Scaffold17990   242252 36 -   357190 I

a score=182.000000
s ce10.chrX              5740516 6 + 17718866 AAATAG
s caeRem4.Crem_Contig0   2442537 6 -  4500979 AGATAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281208 6 -  1189296 CGATCG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3997350 90 +  4147112 I
e caeJap4.Scaffold17990   242252 36 -   357190 I
e cb4.chrX              11071631 8 + 21540570 I

a score=202.000000
s ce10.chrX              5740522 14 + 17718866 TTTATATGTGTTTC
s caeRem4.Crem_Contig0   2442543 11 -  4500979 CTT---TGAGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       3997350 90 +  4147112 I
e caeJap4.Scaffold17990   242252 36 -   357190 I
e cb4.chrX              11071631  8 + 21540570 I
e caeSp111.Scaffold626    281214  0 -  1189296 C

a score=0.000000
s ce10.chrX              5740536 525 + 17718866  
e caePb3.Scfld02_0       3997350  90 +  4147112 I
e caeJap4.Scaffold17990   242252  36 -   357190 I
e cb4.chrX              11071631   8 + 21540570 I
e caeSp111.Scaffold626    281214   0 -  1189296 C
e caeRem4.Crem_Contig0   2442554   0 -  4500979 C

a score=182.000000
s ce10.chrX              5741061 2 + 17718866 AA
s caePb3.Scfld02_0       3997440 2 +  4147112 aa
i caePb3.Scfld02_0      I 90 C 0
e caeJap4.Scaffold17990   242252 36 -   357190 I
e cb4.chrX              11071631 8 + 21540570 I
e caeSp111.Scaffold626    281214 0 -  1189296 C
e caeRem4.Crem_Contig0   2442554 0 -  4500979 C

a score=-984.000000
s ce10.chrX              5741063 2 + 17718866 AT-
s cb4.chrX              11071639 2 + 21540570 -AC
i cb4.chrX              I 8 C 0
s caePb3.Scfld02_0       3997442 2 +  4147112 aa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   242252 36 -   357190 I
e caeSp111.Scaffold626    281214 0 -  1189296 C
e caeRem4.Crem_Contig0   2442554 0 -  4500979 C

a score=546.000000
s ce10.chrX              5741065 1 + 17718866 A
s cb4.chrX              11071641 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2442554 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3997444 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   242252 36 -   357190 I
e caeSp111.Scaffold626    281214 0 -  1189296 C

a score=220152.000000
s ce10.chrX              5741066 284 + 17718866 CTTACATGTCTTTCACAATATCAGACAGACTAACAAATCGTCCTTTAGATGCTCCCTTCAAAATGTACAAAATCAGTGTGTAACATATCAACTCCATTGCATATGGAATTACACAGATTGTTGCAAGATGTAAAACATTATAAAGCTGAAAA----TAA---------------CAATAATTTCTGATTTCA---TGAAGTCCGTCCACTTACCCTTTCCAAATAAAGCCAATTTCTGTTGTTGGTGTGCAGCTCCTCTAAAGTGAATCCTGGCTCGGATGGGAAGTCTTCCTTCGCGTACTAGAA
s cb4.chrX              11071642 286 + 21540570 CTCACATATCCTTAACTATATCAGACAGACTAACAAATCTCCCTTTGGATGCACCCTTCAGAATATACAAAATCAAAGTGTAGCATATTAATTCCAGTGCATATGGCATTACACAAATTGTTGCTAGATGGAGAACATTGTAGAGCT-AAAA----GAAGAATCCATTTTTG-------ATCTCTCAGTTGTTACTA--------TTGCTCACTCTTTCTAGATAAAGCCAATTTCGGTTGTTAGTGTGTAGCTCTTCGAGTGTGAATCCCGGCTCCGATGGGAAGTCTTCTTCGGCgtactgaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2442555 289 -  4500979 CTTACATATCCTTGATTATATCCGATAAACTGACAAATCTTCCCTTCGATGCTCCTTTCAGAATGTATAGAATCAATGTGTAACATATCAACTCCAACGCATAAGGCATCACACAAATAGTGGCCAGATGTAAAACATtataaagctgaaaa----tgatcatttgattttg--aaacaatctTTCATCCCT---TA--------TTGCTCACTCTTTCCAGATAAAGCCAATTTCTGTTGTTAGTGTGAAGCTCTTCTATCGTGAATCCTGGCTCAGACGGAAAATCTTCTTTTGCatactgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281214 285 -  1189296 CTTACATGCTTTTGACAATATCCGATAAACTAACAAATCTTCCTCTAGCCGCTCCTTTCAAAATGTATAAAATCAAAGTGTAGCATATCAATTCCAGTGCATATGGCAAAACACAAATTGTAGCAAGATGAAGAACATTGTATAGCTGAAAG---TTCATCGTTTGTATT-------CAATCTTTCATCCCT---TA--------TTGCTCACCCTCTCCAAATAAAGCCAATTTAGGTTGTTAATGTTAAGTTCTTCGAGTGTAAATCCTGGCTCGGTTGGGAAATCTTCTTTAGCATactgaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3997445 295 +  4147112 ctcacatgctTTTCACAATGTCCGACAAACTAACAAATCTTCCTCTAGCTGCACCTTTCAGAATGTACAGAATCAATGTGTAACATATCATTTCTAACGCGTATGGCAACACACAAATTGTTGCTAAATGAAGGAAATtgtacaactgaaaaaatgtcatcttttgaattttccaaacaatCTTTCATCGCT---TA--------TTGCTCACCCTTTCCAGATAAAGCCAATTTTGGTTGTTCATATTAAGCTCCTCGAGTGTGAATCCCGGCTCGGTTGGGAAATCTTCTTTTGCGTACTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   242288 283 -   357190 CTTACATGTCTTTAATGATATCCGAAAGTGTCACAAATCGACCTCTCGCGGCTCCTtttaaaatgtacaaaattaGTGTGTAAAAAATCAATTCCAGCGCATAAGGAATCACGCAAATTGTTGCCAAATGAAGCACATTGTAAAGCtggaaa----aattggttttttttct-----cggtttcTCATGTCT---GA-----------CATACTCTCTCCAAATATAACCAATTACGGTTGTTTGTATGAAGTTCTTCTAATGTGAATCCAGGCTCTGTTGGGAAGTCCTCTTCGGGGTACTGAAA
i caeJap4.Scaffold17990 I 36 I 1148

a score=-13627.000000
s ce10.chrX              5741350 39 + 17718866 ------------------ATATCACGATC--ATTAGTTTC------------GTTG------------TACAAATTA-AGATTA--------
s cb4.chrX              11071928 69 + 21540570 a---aaagcattgcgaaaataaaactttctaACAAGTCTC------------GTTAGAACCGTCCATATGACTCTTC-CAATTCT-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2442844 76 -  4500979 atagaaaacatt------------tgttttaACAAGTTTCATTAATTTGGTTGTTAGAACTCTCCATGTG---CTTC-CAACTGCAATACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281499 51 -  1189296 ----gaaataat------ataTAAATAACTAACAGGtttc------------attaa--------ttttg---atGCTAAATTA--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3997740 38 +  4147112 ------------------ATAGAAGGTTTTAACAAGTTTA------------ATTA------------TA---ATAA-AAATTG--------
i caePb3.Scfld02_0      C 0 I 168
e caeJap4.Scaffold17990   242571 1148 -   357190 I

a score=-7395.000000
s ce10.chrX              5741389 132 + 17718866 AGACATCAGTTCTT------------------------TTTGTCTTTGCAAGAAGGTAAAAGAACTTACGATTGCTTT-------TTCACTAATTATGTTTG------------------TACCAATGATTATGTAAAAGTGCAAGGTACCGAGACTTTGACATTTTTGAAAAAGAAACCT
s cb4.chrX              11071997 138 + 21540570 -gac-----ttcctc-----------------------tttttttattcacc-----TCTTGCACTTTTCATCTCCCCCACAAACTCCGataattcttttttccccTGTCTATTCTTCACTTgcaaagaacagaaaaaagtgcTAA---------CCCAGAAGTCTCTCATTCAAAACTCT
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   2442920 122 -  4500979 AGAC-----TTCCT------------------------GCTTTCcattcaccaatttttttgcactttttat-------------tCTGCcactcatctttt-----------------ttttcaaagaaccGaaaaaaaCACTAGTCTCCAGACCCCcaactttttccttttgaaagTCT
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    281550 129 -  1189296 ---------TTCTTTGAATAACTGGAAAACCAATAATAACTTCCTCTTCAAA-GCTTTTCTGCACTTTTCATCT-----------TCCCACagaagtttttc--------------------tcaaagaaca-agaaaagttCTACTTGTCcaaccc-----ttttttcctttgaa-----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3997778 168 +  4147112 I
e caeJap4.Scaffold17990   242571 1148 -   357190 I

a score=13526.000000
s ce10.chrX              5741521  72 + 17718866 AATTTCTC-TGTCTACCTAATCAACGACTATAAATGCACGCTTCAGTG--------ACTCAGT--------------------GACTCTTTTGTTAC---TACA
s cb4.chrX              11072154  90 + 21540570 -tttttttACGTTGACctaatctacaaaaaa--aaacacgcttcaatgaagaaggaaattagctagaaattttttcgtc--------TCTCTGTGTC---CACT
i cb4.chrX              I 19 C 0
s caeRem4.Crem_Contig0   2443049  97 -  4500979 -TACTCTTACGCTGAcctaatcaacaaaaaatgagacacGCTTCAGTGGAGAGCAAAATTAGCAAGAAACCTTCTTCTTC---TAGATTTTCACGTC---CGCC
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    281679  90 -  1189296 aGCTTCTC----TGACCTAATCAACTAAAGTTAAGACATGCTCCAGTGAAGAATGGAATTAGCAAGAAGTTTC----------catctttcttcattttgcaAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3997946 104 +  4147112 ACTCTCTCACGGTGACctaatcaacaaaaattaagATACGCTCcagtgaagagaaaaattaggTAGAATCTCCTCTACCCTCTCAGCATTTTGTGTCTTGTCCA
i caePb3.Scfld02_0      I 168 C 0
e caeJap4.Scaffold17990   242571 1148 -   357190 I

a score=313508.000000
s ce10.chrX              5741593 525 + 17718866  
s cb4.chrX              11072244 515 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2443146 511 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    281769 524 -  1189296  
i caeSp111.Scaffold626  C 0 I 12
s caePb3.Scfld02_0       3998050 528 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   243719 559 -   357190  
i caeJap4.Scaffold17990 I 1148 C 0

a score=-2687.000000
s ce10.chrX              5742118 8 + 17718866 TTTTGAAT--
s cb4.chrX              11072759 6 + 21540570 --ttatag--
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2443657 6 -  4500979 --ttctat--
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       3998580 8 +  4147112 tgttcaaa--
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   244278 7 -   357190 ---CCAAAAT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    282293 12 -  1189296 I

a score=697.000000
s ce10.chrX              5742126 4 + 17718866 TAAA
s caeRem4.Crem_Contig0   2443667 4 -  4500979 tgga
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       3998588 4 +  4147112 aaga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   244285 4 -   357190 TAAA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11072765 2 + 21540570 I
e caeSp111.Scaffold626    282293 12 -  1189296 I

a score=273.000000
s ce10.chrX              5742130 1 + 17718866 A
s caeRem4.Crem_Contig0   2443671 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3998592 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244289 0 -   357190 C
e cb4.chrX              11072765 2 + 21540570 I
e caeSp111.Scaffold626    282293 12 -  1189296 I

a score=0.000000
s ce10.chrX              5742131 486 + 17718866 ATAATAATAAGTTCATATAAAGTTTTGAAAATTAGTCGACTCACATTTTGAGAATCAATGATTAGGTCGGCAAATAATTTATCACGTTTTTCATTTAAATGAATACTTTTGTAACAAATTATATGCGACTAATAGTTTGGAGTAATCGCAAAAAAACAATTTGAAAAGTTGTTCCTGCTCAGATCAAAGTATCGAGAAGCTGGTCAAAAAAGCTGAAATCTATAGGTTTGTATAAACTCACTGCTTAGCATAAGTACCCTTCTTTGCCGAACTAATACTACATTATTTTTGCCTTGGCAAATTACTAGTTTCAGTTCAGAATGTTTTCGAACTTTCACATATCACAATTCGACTATTGAAACAGGAATAATAAAATATTTTGGTCTTGTTAATCAAAAAGTTTCATCATTTCCGGCGTGAGGTTTGATGATTTGAAAATAAAACGTGCAAATGCGCAGAAAAGTGTTTGATTTTCTCACTGTTTTC
e caePb3.Scfld02_0       3998593   0 +  4147112 C
e caeJap4.Scaffold17990   244289   0 -   357190 C
e cb4.chrX              11072765   2 + 21540570 I
e caeSp111.Scaffold626    282293  12 -  1189296 I
e caeRem4.Crem_Contig0   2443672   0 -  4500979 C

a score=630.000000
s ce10.chrX              5742617 13 + 17718866 ACATCATTAAATA
s caePb3.Scfld02_0       3998593 13 +  4147112 acagcgCTAAGTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244289  0 -   357190 C
e cb4.chrX              11072765  2 + 21540570 I
e caeSp111.Scaffold626    282293 12 -  1189296 I
e caeRem4.Crem_Contig0   2443672  0 -  4500979 C

a score=-844.000000
s ce10.chrX              5742630 6 + 17718866 TATTCG---
s cb4.chrX              11072767 6 + 21540570 TGTTaa---
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       3998606 6 +  4147112 ---TAATGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244289 0 -   357190 C
e caeSp111.Scaffold626    282293 12 -  1189296 I
e caeRem4.Crem_Contig0   2443672 0 -  4500979 C

a score=771.000000
s ce10.chrX              5742636 7 + 17718866 AACAGAC
s cb4.chrX              11072773 7 + 21540570 aaaaaGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2443672 7 -  4500979 aaaaaac
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3998612 3 +  4147112 ----ATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244289 0 -   357190 C
e caeSp111.Scaffold626    282293 12 -  1189296 I

a score=135.000000
s ce10.chrX              5742643 2 + 17718866 TT
s cb4.chrX              11072780 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2443679 2 -  4500979 tg
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       3998615 2 +  4147112 CC
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold17990   244289 2 -   357190 TT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    282293 12 -  1189296 I

a score=122562.000000
s ce10.chrX              5742645 148 + 17718866 ACCCAGTATGAGTGAATCCATGCAAACTGAGTTGGAGCGTAGATAAAGAGAACGATGCAGTCCGCTACAGACAAACTGATTTTGTACGAAAACAGGCGAGCAGCCAACACGAGATGTTGTCGTGAGGAGCGTGATCTGAAATTGT------AAT
s cb4.chrX              11072782 152 + 21540570 ACCCAGTACGAATGGATCCAAGCAAACTGAGTCGGTGCATAAATGAACAATACGATGCAATCAGCAACTGATAAGCTGATTTTGTACGAGAAGAGTCGAGCGGCGAGTACGAGGTGCTGTCGGGAAGATcgagatctgaaa--ataatccgAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2443681 151 -  4500979 acccAATAGGAATGAATCCAAGCAAACTGAGTCGGCGCATAGATAAATAAGACGATGCAATCAGCAACAGATAAACTGATTTTATAAGAGAACAGTCGAGCAGCAAGAACGAGATGTTGACGAGAAGATCGTGATCTGAAA-CACGGAC--AAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    282305 152 -  1189296 ACCCAATAAGAATGGATCCAAGCAAATTGAGTGGGGgcataaatgaataaaacgaTACAATCAGCCACAGATAAACTGATTTTATATGAGAAAAGACGAGCAGCAAGAACCAAGTGTTGTCTTGAGGATCTGGATCTGAAACCAtgtgt--tgt
i caeSp111.Scaffold626  I 12 C 0
s caePb3.Scfld02_0       3998621 147 +  4147112 ACCCAGTAAGAATGAATCCAGGCGAATTGAGTTGGCGCATAAATGAATAACACAATACAATCAGCCACAGACAAACTGATTTTATATGAGAATAACCGAGCGGCAAGAACCAAGTGTTGTCGAGATGACCTGGATCTGAAACCA-------AGT
i caePb3.Scfld02_0      I 4 C 0
s caeJap4.Scaffold17990   244291 148 -   357190 ACCCAGTAAGAATGAATCCATGCGAATTGAGTCGGTgcataaataaacaaaacaatgcAATCAGCCACTGTCAGACTTATCTTGTAGGAGAAAAGACGGGCGGCAAGTACCAGATGCTGGCGGGAGGATCGGGAACtgtaataaa------aat
i caeJap4.Scaffold17990 C 0 C 0

a score=4067.000000
s ce10.chrX              5742793 69 + 17718866 GTTTCC----ATATTCAATCAATATAGTTCATCACTA-----TAACGCCACTGTAAAGACA---AGGGTATTTGGGGGAGG
s cb4.chrX              11072934 60 + 21540570 TTTCCA----GTTCTACAGCAAC---CATCACTACTAAGCAAGAACGACACTATTAG--------------TTGGAAGAGG
i cb4.chrX              C 0 I 412
s caeRem4.Crem_Contig0   2443832 71 -  4500979 TTTTTA----GTATTTTAGATGA---AACTATCACTAGACATGAACAACACTACGGGGAAT---GGGGATATGGGACGGGG
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626    282457 63 -  1189296 ttttct----ctgttcaaaa------aaacatcacTAGACATGAACGACACTATGGGAAGG--------ATTGGGACGAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3998768 79 +  4147112 TATTCTAGACATGTTCAATACAT--TCATCATCACTAAACATGAACAACACTTTAGGAAGGattaaaaaattgggaagggt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244439  0 -   357190 C

a score=9749.000000
s ce10.chrX              5742862 64 + 17718866 ----------------TG---------------GGTTGAGTACT------ACTTAAAGCTTTCTCACTTTCA-AT----ATTGTTTCATTTCTCACCGTGTCAACC
s caeRem4.Crem_Contig0   2443913 89 -  4500979 -----T-----GGGTCTGAAACAACTATGAAGCGGTGGGACTCA------ATTTAAAGCTTTCTCACATCAA-ATAACCAATGTTTCCCTTCTCACCTTGTCAATC
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626    282520 90 -  1189296 GGATTTATACGGAATCTGAAACTATTTTAAAGCGGAGGGACTCT------ATTCAAAGCGTTCTCACTTCCGAATAACCAG----------CTTACCGAGTTAATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       3998847 90 +  4147112 GAATAT-----TGATCTGAAACTACTAAAAAGCGATGGGGCTCTAATGGGACTCAAAGCGTTCTCACTTCCG-ATTACCAG----------CTTACCGTGttgatc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   244439  0 -   357190 C
e cb4.chrX              11072994 412 + 21540570 I

a score=-7002.000000
s ce10.chrX              5742926 28 + 17718866 TGAAAGTGTT-TGCA--------------------TTCATATTTAAGCA
s caeRem4.Crem_Contig0   2444002 20 -  4500979 TGAAAGTGTTATTAA-----------------------------GAGAA
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    282610 33 -  1189296 TGGAA------TTAG----------TGGTTAGTCTttcaactttaaaaa
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       3998937 48 +  4147112 tggaaatatt-ttagGATACCATACTGACTGGTATTAGAATCGTTATAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold17990   244439 21 -   357190 tgaaagtcAT-TTAG-------------------------AGCTGAG--
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11072994 412 + 21540570 I

a score=35058.000000
s ce10.chrX              5742954 414 + 17718866  
s cb4.chrX              11073406 440 + 21540570  
i cb4.chrX              I 412 C 0
s caeRem4.Crem_Contig0   2444026 387 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    282646 414 -  1189296  
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       3998988 423 +  4147112  
i caePb3.Scfld02_0      I 3 I 625
s caeJap4.Scaffold17990   244460 345 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-6940.000000
s ce10.chrX              5743368 10 + 17718866 TTTT------------CGAAAA
s cb4.chrX              11073846 21 + 21540570 ATTTGATCTACATAT-CAAAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2444413  6 -  4500979 ATTT----------------GG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    283060  5 -  1189296 -----------------gaaaa
i caeSp111.Scaffold626  C 0 I 86
s caeJap4.Scaffold17990   244805 10 -   357190 -----------TTATACATAA-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I

a score=-6320.000000
s ce10.chrX              5743378 46 + 17718866 TTGAG--CGCAATTTCT--------------------GAGAAACGGTGGATAATGAAAGGTTATGGTG
s cb4.chrX              11073867 66 + 21540570 TTGTGTGGGGAGGGTTTAGTAATAGGCGGGTTTTGTGAAAATCCGAC-GATAATTATTAGGTAGAAC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2444419 49 -  4500979 TTTTG------ATTTCTACTAACA-------------AAAATTCAGCAGATAATAAAAGGGTATGATG
i caeRem4.Crem_Contig0  C 0 I 110
s caeJap4.Scaffold17990   244815 30 -   357190 ------------------------------------TTGCACCCGA--AATGAAGATAGGGTGTGTTG
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeSp111.Scaffold626    283065 86 -  1189296 I

a score=77.000000
s ce10.chrX              5743424 29 + 17718866 GAAATCTGATGTTATCTTAATATCTCAAT
s cb4.chrX              11073933 28 + 21540570 AAAATCTGATATCAG-TTGGTAGTCcact
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   244845 22 -   357190 -------GTTGGTTGATTGACATCTAGAT
i caeJap4.Scaffold17990 C 0 I 32
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeSp111.Scaffold626    283065 86 -  1189296 I
e caeRem4.Crem_Contig0   2444468 110 -  4500979 I

a score=-429.000000
s ce10.chrX              5743453 5 + 17718866 AGTCT
s cb4.chrX              11073961 1 + 21540570 a----
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeJap4.Scaffold17990   244867 32 -   357190 I
e caeSp111.Scaffold626    283065 86 -  1189296 I
e caeRem4.Crem_Contig0   2444468 110 -  4500979 I

a score=-653.000000
s ce10.chrX              5743458 34 + 17718866 GAAACTGAGTAAATTGAGGGGATGCAGTGTCAGT
s cb4.chrX              11073962 31 + 21540570 -aaattt-gagaattttggagaTTCAAA-TTAGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    283151 29 -  1189296 GAAGTT----GCATAAGAGAGATGCTGT-CTAAc
i caeSp111.Scaffold626  I 86 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeJap4.Scaffold17990   244867 32 -   357190 I
e caeRem4.Crem_Contig0   2444468 110 -  4500979 I

a score=111.000000
s ce10.chrX              5743492 2 + 17718866 TA
s cb4.chrX              11073993 2 + 21540570 TG
i cb4.chrX              C 0 I 15
s caeSp111.Scaffold626    283180 2 -  1189296 ag
i caeSp111.Scaffold626  C 0 I 3
s caeJap4.Scaffold17990   244899 2 -   357190 TG
i caeJap4.Scaffold17990 I 32 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeRem4.Crem_Contig0   2444468 110 -  4500979 I

a score=-46481.000000
s ce10.chrX              5743494 188 + 17718866 TTGAATAT----------------------------GCAATT----AGAAGTGAAATTTTGAA-----------AATTTCAGAGTATGGAAACAAATGTCATAAGAAGGTTTCTATGGAAAT----------------------------AGTTATGGCCTT-AGATACAA----AAGCAAAAAAGCAACAAAAAAAACATACGCAC-------ATC----CGTCTGAATCCTAGACATACCAAATATGGGCTAATGAAAACATT------TTTTTTCTTT
s cb4.chrX              11074010 215 + 21540570 TTAGAGAA-------------------TTTTCTgacagaatc--------taaaaaaaatgaaagataaATT--CTCCGCA----ATGAGCAAAATTG----CGTGATGTATCTATAGAGAGTCAT--------------GACGACTTG-AAAAATG--CTA-AGATACGA------tataaaaacaagaaaaaaaagcataGAAATAGAGAACAATTTTGTTTCCATCGGCAAAAAAGAGCTGGT---GACTAATTAGAACATTAgg--cactttttttt
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2444578 253 -  4500979 ctaaataaaaattatatagtcgaaaatttttttgagaaaatcg--cAACATGGAAAACAAGAATGCTGgctttccttttca---ttttagGGAAATCG--AAAGGAATGTTTCTATGgaggttcttttttt-----ctccataGATTCGTAGCAATG--CTA-GGTAACGG-----TTCTAAATACAagcagaaaaattatttccatgtctaa-aat----tttcagatgactgaaaatgacaaat---gaCTAACCAGAACATTAGGTCCCCTCATGCTT
i caeRem4.Crem_Contig0  I 110 C 0
s caeSp111.Scaffold626    283185 203 -  1189296 tcaaataa---------------------------aacaatt-------ataaaaattttg-----tcttttttagTCCCA-------------GTCG--AACAAAACATTGTCatgga--ttcattttttacgGCCTCCGCTACCT---AGCAATG--CTA-AGATACGGATGACTGGAGAAAATAAGCTCAATCAGTCTT------------ATTTCTTTATTAGAAtaggaatgagaaaaaat---gagtcatgAAGACATtagg-aaacttttttgt
i caeSp111.Scaffold626  I 3 C 0
s caeJap4.Scaffold17990   244901 151 -   357190 ----------------------TTGAATTTTCAACACGAATTGTCtagcagaagaaaaaaaaa-----------cctttca----cTTCGTAAGGTTG--------TTTTTCTTATGTTAGTCC--------------------------AAAATTG--CCATAGAAAGAA-------------------------------------------AATTGTCCCTCTGAT--CGGAAACTCCAAAAT---------TGAAGCAAGTATA---TTTTTggttt
i caeJap4.Scaffold17990 C 0 I 77
e caePb3.Scfld02_0       3999411 625 +  4147112 I

a score=-5841.000000
s ce10.chrX              5743682 55 + 17718866 TCTTGTCTCATTCG--------ATGACTAACCGGGTCAAGAAGAAC--ATAAAAAAGCCGGGAGT
s cb4.chrX              11074225 54 + 21540570 tagattttggacCC--------ATGTCTGTCtgggtcaaaaatgag--aaacggAAGGTTAAAT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2444831 56 -  4500979 TCTATATTAGACCT--------GGGTCTGTCTAGAGTAAAAAGGAACTAAAGAGACAATTGAAT-
i caeRem4.Crem_Contig0  C 0 I 117
s caeSp111.Scaffold626    283388 44 -  1189296 tc--tcttgaACCTCGTGGATAatgtactttttgaaaattcatgag-------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeJap4.Scaffold17990   245052 77 -   357190 I

a score=-1868.000000
s ce10.chrX              5743737 25 + 17718866 C---AGGGAGTTAGGGATTAACATCCAA-
s cb4.chrX              11074279 25 + 21540570 -gagagagaagaggaaaa--acaaTGAA-
i cb4.chrX              C 0 I 29
s caeSp111.Scaffold626    283432 25 -  1189296 ----agcaaagttgaaaatgaaaatagaa
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeJap4.Scaffold17990   245052 77 -   357190 I
e caeRem4.Crem_Contig0   2444887 117 -  4500979 I

a score=-670.000000
s ce10.chrX              5743762 8 + 17718866 GTACTTCT
s caeSp111.Scaffold626    283457 5 -  1189296 a-actc--
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeJap4.Scaffold17990   245052 77 -   357190 I
e cb4.chrX              11074304 29 + 21540570 I
e caeRem4.Crem_Contig0   2444887 117 -  4500979 I

a score=-1222.000000
s ce10.chrX              5743770 39 + 17718866 TTTTTTTGGAAATAATTTGGAGCATTTGGAGCATTCA----AA
s caeSp111.Scaffold626    283462 32 -  1189296 --------gAAATAATT---AGTTATCAGATGATTCAGCtgga
i caeSp111.Scaffold626  C 0 I 5
s caeJap4.Scaffold17990   245129 34 -   357190 tttatttgaaaaatgtttggaagagttagacaaa---------
i caeJap4.Scaffold17990 I 77 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e cb4.chrX              11074304 29 + 21540570 I
e caeRem4.Crem_Contig0   2444887 117 -  4500979 I

a score=-3612.000000
s ce10.chrX              5743809 29 + 17718866 -AAATGGTGGGTAACTATTTTAATGCAGGA
s cb4.chrX              11074333 29 + 21540570 -ACGTGATGTGCTGATATCCAGAGTCAggg
i cb4.chrX              I 29 C 0
s caeSp111.Scaffold626    283499 20 -  1189296 -acaaaatatgttaaaaatga---------
i caeSp111.Scaffold626  I 5 C 0
s caeJap4.Scaffold17990   245163 12 -   357190 aacaaggtagaa------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeRem4.Crem_Contig0   2444887 117 -  4500979 I

a score=-2006.000000
s ce10.chrX              5743838 8 + 17718866 AAAACAAA-
s cb4.chrX              11074362 2 + 21540570 ------ga-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2445004 6 -  4500979 --CACACA-
i caeRem4.Crem_Contig0  I 117 C 0
s caeSp111.Scaffold626    283519 8 -  1189296 taaacaaa-
i caeSp111.Scaffold626  C 0 I 26
s caeJap4.Scaffold17990   245175 8 -   357190 -aaactaat
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I

a score=-436.000000
s ce10.chrX              5743846 29 + 17718866 ACCAGAATGAAGATCCAAAGAGTTTGAGT---------
s cb4.chrX              11074364 27 + 21540570 aatagaaaaaaaagaaaaatgt--tgaat---------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2445010 27 -  4500979 AAcagataaaaaaaataaaaag--agaat---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   245183 29 -   357190 -------aaaaagaagaaaaat--tggTTATCCTGAGA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I
e caeSp111.Scaffold626    283527 26 -  1189296 I

a score=-25160.000000
s ce10.chrX              5743875 114 + 17718866 GGGTATAAT-----AACGGAAGAG---CTGCAA--AGGTATTGAGAAAGATAAA--------------AAAGCAAAACGGAGTAATAAATG-----------GTGGGAAAAAAGTTTTCCGGGGCTAGTTGA------TGGAAATGAAAAAGGGA
s cb4.chrX              11074391 130 + 21540570 ---atcCAC-----AATACgggagattttcgaatttagtTTGGAACCAGATGAA--------------GAAGAATTTTAAGGAGTTGAAATCTAATTgctattt---caaatattctacCAGAGTTACCATACCCTTCAGTGAATAATTAAAact
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2445037  96 -  4500979 ---tttgatataaaaagaaaagtgatgttggaa-aagGTTTGGCACAGAATaca-------------tgaaaaataacagagtgaggtaat-----------------aaaaa-------------------------attgaatagataaaagt
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    283553 102 -  1189296 aaatgtgat-----AATAAAAGAG---TTGGAGTCTAatgagaacaaaaatgagCTATCGGttagaatgaagaa----aaggaaatgaaat-----------tt---taga---------------------------ggcgaacaaaaaaagaa
i caeSp111.Scaffold626  I 26 I 24
s caeJap4.Scaffold17990   245212  83 -   357190 ---AGTCAT-----CAAATTCGGCTTTTTCCGA------gaggagcaaaaaaaa-----------agtgaaactaGGAGaagaaataaatt-----------tt----------------------------------gttcgtcggaagaag--
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       3999411 625 +  4147112 I

a score=155716.000000
s ce10.chrX              5743989 499 + 17718866  
s cb4.chrX              11074522 630 + 21540570  
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2445134 566 -  4500979  
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    283679 513 -  1189296  
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       4000036 496 +  4147112  
i caePb3.Scfld02_0      I 625 C 0
s caeJap4.Scaffold17990   245295 530 -   357190  
i caeJap4.Scaffold17990 C 0 I 967

a score=14080.000000
s ce10.chrX              5744488 87 + 17718866 AAAC--GGAAAAAA-------GTCCGTC-GCATTTTTTTTTATCTTGACGCGTGTATAAGAA----TGGGAGAGAA--------AGTTGAATTCAAGAATCAAAAATCA
s cb4.chrX              11075152 90 + 21540570 AAGGATGGGAAAAAATCGAGGgcgtttt-ttctc-ttct-----------cggTTAGCCTAACT-CCGTGAG---G--TTGCTGAATTGAATCCGGTGATCAAAAAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2445700 88 -  4500979 aagaaaggggaaaa-------gaaTTTC-GCCGCTTTTT-----------CGGGAAGAGGAAATGCCGTGAGTGAG--TTGAAGAATTGAATTGGACgatcaaaaagca
i caeRem4.Crem_Contig0  C 0 I 2427
s caeSp111.Scaffold626    284192 81 -  1189296 aaga--agaaagaa-------gattttcggcggcttttt-----------tgagaagaggaAACTGCGTGagtgaa--------aattgaatcgaATGATCAAAAAGCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4000532 88 +  4147112 aaaa--gaaaagaa-------gtttttc-gCGGCTTTTT-----------CAGGAAAAGGAAACTTCGTGAGTGAAAAACGGAGAATTTAATCGGACGatcaaaaagca
i caePb3.Scfld02_0      C 0 I 1142
e caeJap4.Scaffold17990   245825 967 -   357190 I

a score=-227.000000
s ce10.chrX              5744575 12 + 17718866 TTGTGTAGGAGT-
s cb4.chrX              11075242 12 + 21540570 -AACAAAGAAGAT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    284273 11 -  1189296 -CGTAAAGAAGT-
i caeSp111.Scaffold626  C 0 I 980
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e caeRem4.Crem_Contig0   2445788 2427 -  4500979 I

a score=1379.000000
s ce10.chrX              5744587 476 + 17718866 AACAAGTAAGTTTTG----CAAATATTTTTTGAATATCGATTTATTCTAATTATGTGGCAGTCGTAAAAATGATGTGGGACACTAttttcattgaaatttcg-----tttcaaatataatatgaaaacaaataaa-----gcattaattgatctataaataacatttgttttggttc------gaaaataaacttggaaattgtattaaagttgtaaattgcagaaattaacttttattatactctcgatttctttatctgcaattggtaactttaatgcattttttaaaccgtccccaaaAATTAAAAAAATGTGCAAAACATTTTTTACACAATGAATCAGTAACAAATGTTTTTAAAATGCCTACACAT-AATTTTATATTATGATAAGATAACTGAAAGCACTCTCATAAACTTCCGCATTCAGCAAATTCGGAAGATGAG-ACATAACATGTTAAGATCTTCGTGAAAAATGGAAAATTTAAATATAGGCAAA
s cb4.chrX              11075254 430 + 21540570 AAACGATAAGTTTTGAAGTCAACGACTTcgtagttttctttttgttct----------ctGTTTTGAGTAT------TGATAttattttaa-gaaaatttcaatcatTTCTAGACGAAATTTGGAGGAGGATATATATTCTTATAAGCTGAAATCCAAA--------GCTGtggatctttgaaaaaaataagttagACATTTTCTTTATAGTTGTGAATCGGAAA--------TTCGAGAGATTTTCGAT------------AACCAAAAAT-----TACATAATTTAga-----gtcaaaaatttgaagatcgTACGAAACGCATATTAGACCAAGAGAAATTGTTAGTTTCTTGAAAAA-----ACACGTCAATGTGAAATTACTATCTAGAAATTGAGAGCATTCGAAtcaatctcaattttcatcaaCAAAGGAACTTAAGCACCTTGTGAACCcacattttcat--------aaaaattttagtATAGGTAAA
i cb4.chrX              C 0 I 833
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e caeSp111.Scaffold626    284284 980 -  1189296 I
e caeRem4.Crem_Contig0   2445788 2427 -  4500979 I

a score=0.000000
s ce10.chrX              5745063 618 + 17718866  
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e cb4.chrX              11075684 833 + 21540570 I
e caeSp111.Scaffold626    284284 980 -  1189296 I
e caeRem4.Crem_Contig0   2445788 2427 -  4500979 I

a score=139.000000
s ce10.chrX              5745681 22 + 17718866 CAACCAAAAATGAGGCTC------AAAG
s caeSp111.Scaffold626    285264 28 -  1189296 CGAATAAAAGTGAATCTCTGCTACCAAC
i caeSp111.Scaffold626  I 980 C 0
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e cb4.chrX              11075684 833 + 21540570 I
e caeRem4.Crem_Contig0   2445788 2427 -  4500979 I

a score=2019.000000
s ce10.chrX              5745703 7 + 17718866 GCATCTG
s caeRem4.Crem_Contig0   2448215 7 -  4500979 GCATCTG
i caeRem4.Crem_Contig0  I 2427 I 2
s caeSp111.Scaffold626    285292 7 -  1189296 GCATCTG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e cb4.chrX              11075684 833 + 21540570 I

a score=20623.000000
s ce10.chrX              5745710 86 + 17718866 --CTCCATGGAATGAAGCGAAACAAAAAAAACGTTGTCATCAGCTCATGGGAAAGCAAACAAACAAAAT--CAAGAATCCATAGAACAAA
s cb4.chrX              11076517 77 + 21540570 --CTCCATTGAATAAAATGAAACCGAAGAAACGTTG---TCAAGTCATGGGAAAGTAAACAAA--------TAGGAATCCGTTGAACAGA
i cb4.chrX              I 833 I 214
s caeRem4.Crem_Contig0   2448224 78 -  4500979 --TTcca--gaaagaaatgaaac---aaaaatgttg---tcaggTCATGGGAAAGTAAACAAACACAAAATCAAGAACCCATAGAACA--
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    285299 77 -  1189296 CTCTTCa-----aagaatgaaac---aaaaacgatG---TCAGGTCATGGGAAAGTAAACAAATAGAAA--CAAGAATCCATAGAACata
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I

a score=683.000000
s ce10.chrX              5745796 71 + 17718866 ATAGTGTGTCCTTTGAATGTCTTCATCTTAATCAGAAACT---------AGATATATAT-ATCTCCGTGATTTTTAGATTA
s caeRem4.Crem_Contig0   2448302 71 -  4500979 ---------TATTCTCAGATTCtcgttttcatcaaaaactgaactgaGAAAGCAGAAAG-ATGTTTCCGATTATTGGatta
i caeRem4.Crem_Contig0  C 0 I 219
s caeSp111.Scaffold626    285376 63 -  1189296 -----------ttctcattcttctgtttct-------acTCATCCATGATAATATATAGCATGTATGAGATTATTAGATTa
i caeSp111.Scaffold626  C 0 I 1160
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e cb4.chrX              11076594 214 + 21540570 I

a score=0.000000
s ce10.chrX              5745867 764 + 17718866  
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I
e cb4.chrX              11076594 214 + 21540570 I
e caeSp111.Scaffold626    285439 1160 -  1189296 I
e caeRem4.Crem_Contig0   2448373 219 -  4500979 I

a score=2695.000000
s ce10.chrX              5746631 17 + 17718866 ATGATTCATACTGAGAG-------
s cb4.chrX              11076808 17 + 21540570 ATGATTCATCTCATCAG-------
i cb4.chrX              I 214 C 0
s caeRem4.Crem_Contig0   2448592 17 -  4500979 ATGATTCATTCAATTAG-------
i caeRem4.Crem_Contig0  I 219 C 0
s caeSp111.Scaffold626    286599 24 -  1189296 ATGAATCATATAAttagatgagaa
i caeSp111.Scaffold626  I 1160 C 0
e caePb3.Scfld02_0       4000620 1142 +  4147112 I
e caeJap4.Scaffold17990   245825 967 -   357190 I

a score=46815.000000
s ce10.chrX              5746648 172 + 17718866 AAAAAGAAAACCTGAG--------------TGGAGGTTTC-GCATATTTCATTCAAAAAATAAGATGAGCTGTTTAATAGT--TCATTTAATTCAACAGTTGGTGATTGGGAGATGAAAAAGATCAAAACCCCTTGAAATT-CTTCGGCAA-AATAAT--------AA-----A---GAAATAGTGTTTCGAGACGAGAAGAACAGC-
s cb4.chrX              11076825 171 + 21540570 ATGAAGAAAATGTAGGAA--------------GTGGTTTTGGCatatttcattcaaaaaataagctaAGA-GTCTATCAGCCACCAATAAAACTAACAGTTGGTGC----------------ATCGAA--CCCGTGAAATT-CGCGGGGCGGTGTagtgttttcaaaaacgaga---aaaatattGGCTTGATAAAGGATGAGCAGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2448609 188 -  4500979 AGCAagagaaagtaaaaaatagaaagataGCGGTGGTTTTAGCatatttcactcaaaaaataagaTGGGA-GTCTATTAGT--TTGTTTGATCCAACAGTTGGTGCAT---AGAT--AAGAGATCGAA--CCCGTGAAAAT-CGCGGGcggcaacatttttttccaaa-----g---aaaatagtgatGTGATATGAGATGAGCAGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    286623 164 -  1189296 --gaaaatagaattcgAC-----------CCGTTGGTTTTAGCATATTCCCT--ACAAAACAAGATGAGA-GACTATTA-------GTTGATCCGACAGTTGGTGCAT---TGAT--AAGACATCG------CGTGAAAAT-CGCGGGCGGCAATagtgttttgaaaa-----g---aaaatagtgtCCTGATATCGGATGAGCAGC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4001762 177 +  4147112 aggaagaaaaaatgag--------------cagtGGTTTCAGcatatttcattcaaaaaataagatgaGA-GCCTATTAG---CTCGTTGATCCAACAGTTGGTGCAT---AGAT--AAGAGATCGAA--CCCGTGAAATTCCGCGGGCGGcaataatgttttcaaaa-----gaaaaaaatagtgccGTGATATCGGATGAGCAGT-
i caePb3.Scfld02_0      I 1142 C 0
e caeJap4.Scaffold17990   245825 967 -   357190 I

a score=30531.000000
s ce10.chrX              5746820 35 + 17718866 ACAATTGATCGTAGTCAATTAATCAAGCATTG-AGC
s cb4.chrX              11076996 36 + 21540570 ACGATTGATTGTGGTCAATTAATCAAGTCTCGAAGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2448797 35 -  4500979 ACAATTGATTGTGGTCAATTAATCAAGCAGCG-AGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    286787 36 -  1189296 ACAATAGATTTCAAGCAATTAATCAAGCAACGAGGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4001939 36 +  4147112 ACAATTGATTGTGGTCAATTAATCAAGCATGGGAGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   246792 35 -   357190 ACGATTGATTGTGGTCGATTAATCAAGCTCTG-GGC
i caeJap4.Scaffold17990 I 967 I 1947

a score=17363.000000
s ce10.chrX              5746855 48 + 17718866 AA----GATATCGGATTTTGGCGGTAGAGTGATTTATCATTCATATCAT--GGG
s cb4.chrX              11077032 46 + 21540570 AG--TCGAAA----AAACCAGCGGTAGAGATATTCATCAAGAATATCAC--GGG
i cb4.chrX              C 0 I 732
s caeRem4.Crem_Contig0   2448832 52 -  4500979 AGGCTCGGTATCTGAATTCAGCGGTAGAGTTATTCATCATGAATATCAC--GGG
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    286823 54 -  1189296 ATGCTCGGTTACTGATTTCAGTGGTTGAGTTATCCATCATGAATATCACCGGGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4001975 48 +  4147112 AAGCGCG----TCGAATTCAGTGGTGGAGTTATTCATCATGCATATCAT--GGg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I

a score=964.000000
s ce10.chrX              5746903 82 + 17718866 -----AAGCGATATCTTCT------GTCTTTTCCTTTTCTCTTAC----CACCC-TTTCAGACA--------ATATTGAATGAATTGAAGATTTCTATAATCTTCT-
s caeRem4.Crem_Contig0   2448890 97 -  4500979 --AGGAAATATCCgtctttctttttgcttttttcaactctAT-------CGCGT-TTTTCGTCAGACAAAACACAATGCATAAGATTCCTTTTTCATTAATCTTCTT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    286877 91 -  1189296 GGTTAAAA------CCTCT-TTTGTGCAttcctcttttctatttcatcCCACGG-TTTCCGTCAG-------ACAATGAATAagatccttttttcattaatcttct-
i caeSp111.Scaffold626  C 0 I 767
s caePb3.Scfld02_0       4002023 77 +  4147112 ggttgaaaaaagagattct--------attcttcttctat---------cATGGTTTTTTGTAAG-------ACGATGAATGAGA----TTTTTCATTAATCTTC--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e cb4.chrX              11077078 732 + 21540570 I

a score=-3.000000
s ce10.chrX              5746985 13 + 17718866 ACGTCATTGTTTT---
s caeRem4.Crem_Contig0   2448987 13 -  4500979 CCGGCAGTGTTTT---
i caeRem4.Crem_Contig0  C 0 I 708
s caePb3.Scfld02_0       4002100 12 +  4147112 ----CTTTGTTATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e cb4.chrX              11077078 732 + 21540570 I
e caeSp111.Scaffold626    286968 767 -  1189296 I

a score=91.000000
s ce10.chrX              5746998 1 + 17718866 A
s caePb3.Scfld02_0       4002112 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 960
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e cb4.chrX              11077078 732 + 21540570 I
e caeSp111.Scaffold626    286968 767 -  1189296 I
e caeRem4.Crem_Contig0   2449000 708 -  4500979 I

a score=0.000000
s ce10.chrX              5746999 1433 + 17718866  
e caePb3.Scfld02_0       4002113  960 +  4147112 I
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e cb4.chrX              11077078  732 + 21540570 I
e caeSp111.Scaffold626    286968  767 -  1189296 I
e caeRem4.Crem_Contig0   2449000  708 -  4500979 I

a score=43.000000
s ce10.chrX              5748432 6 + 17718866 TGACTC
s cb4.chrX              11077810 5 + 21540570 TGACT-
i cb4.chrX              I 732 C 0
e caePb3.Scfld02_0       4002113 960 +  4147112 I
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e caeSp111.Scaffold626    286968 767 -  1189296 I
e caeRem4.Crem_Contig0   2449000 708 -  4500979 I

a score=4938.000000
s ce10.chrX              5748438 65 + 17718866 TGCAAAAAGTAGAGGAGGATATAAATAACACGGCAT-----AAAACATATGTTGCATAAAAAC-------------TTACAGA
s cb4.chrX              11077815 69 + 21540570 TGTAGGCGGCATCGAGAGATATAAATAACGTGATGTCTGGAGAAACAC--------TAAAAACAGACG------TTTTATGAC
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4003073 75 +  4147112 TGTAGGCGGCACAAAAAGATATAAATAACGTGATGTCTGttgaaacac--------taaaaacaaagggcctgcctttacgga
i caePb3.Scfld02_0      I 960 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e caeSp111.Scaffold626    286968 767 -  1189296 I
e caeRem4.Crem_Contig0   2449000 708 -  4500979 I

a score=4656.000000
s ce10.chrX              5748503 9 + 17718866 AACAAAATG
s cb4.chrX              11077884 9 + 21540570 AACAAGatg
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    287735 9 -  1189296 aacaaaatg
i caeSp111.Scaffold626  I 767 C 0
s caePb3.Scfld02_0       4003148 9 +  4147112 aacaaaatg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I
e caeRem4.Crem_Contig0   2449000 708 -  4500979 I

a score=910.000000
s ce10.chrX              5748512 1 + 17718866 A
s cb4.chrX              11077893 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2449708 1 -  4500979 a
i caeRem4.Crem_Contig0  I 708 C 0
s caeSp111.Scaffold626    287744 1 -  1189296 a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4003157 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   246827 1947 -   357190 I

a score=164129.000000
s ce10.chrX              5748513 267 + 17718866 AACAAAATGAAAAATATTTGCTTTGGGAAATGAAC------------------------AGAGGGTGGACAA-GATATG-CAA--AAGGCGGAAGG-TTTATGACTCCCCAGGCGGC--------CAGTTACAGGCTTCACGAACTACAGGAA---------------CCAAATTCGTTTATTACGTATGCCGAC--AAAAACG---------------------------CGCTGCTG------ACACTGC-GTTTGCCTGCGCGAAAATGATGAAAAGCACCATTGAGAGTT--GGGA-----------------CGATGT--TG---------CTCACACCTTTCCG--CCGCCCAATTCTCCAGGGGAA---TATA-AGAATGAGTC
s cb4.chrX              11077894 309 + 21540570 aacaaaatgaaaaatatttgctCTGGGAAATGAACAGAAGTATGCAGGAGGCAGCGA--GGGCGGTGGTGAA-ACAGCAGAAAGTAAGACGGAAGG-TTTATGAATCCCCAGGCGAC--------GTGCAAC-------ACGAACTACAGG-A---------------CCAAATTCGTTTATTACGTATGCCGACaaaaaaaCG---------------------------TTGTGCAG-----TATATGCC-CATTGCCTGCGCAGAAATGATGAAAAGCACCATTGAGAGTT--TCGAAAAGACGGGGAGCCCCTTGTTGCAAAGCCGGGA---CTCACAcctt------ttccgaaattctccaGGGGAA---TATAGGGAATGAGTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2449709 283 -  4500979 aagaaaatgaataatatttGCTCTGGGAAATGAACAGAAGT---TAGG----ATTGA--AGGGGGTGGACAA-GCTGTA-AAAGTAAGACGGAAGG-TTTATGAATCCCCAGACGAC--------TTGCAAC-------CCGAACTACAGGAA---------------CCAAATTCGTTTATTACGTATGCCGAC-AAAAAACG---------------------------TTTCGC--------ATACTGC-CATTTCCTGCGCAAAAATGATGGAAAGCACCATTGAGAGTT--TGGA-----------------CGATGCAAAGCTTGG----CTCACACCTTTCGG--TCCCTCAATCCTCCAGGGGAA---TATA-GGAATGAGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    287745 289 -  1189296 aacaaaatgaaaaatatttgctCTGGGAAATGAACAGAAGTA----------ACAGAATAGAGGGTGGACAAGGCTGTA-AATGTAAGACGGAAGGTTTTATGAATCCCCAGACGAT--------TCGCAAC-------ACGAACTACAGGAA---------------CCAAATTCGTTTATTACGTATGccgac-aaaaaat----------------------------ttttgctgCTGCTCACACTGGGCCTTGCCTGCGCAGAAATGATGTAAAGCACCATTGAGAGTT--TCGA-----------------CGATGC--AGTTG------CTCACACCTTTCGG-CCCCTCCAATTCTCCAGGGGAA---TATA-GGAATGAGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4003158 287 +  4147112 aacaaaatgaaaaatatttgctaTGGGAAATGAACAGAAGTA----------AGAGA--AGAGGGTGGACAA-GCTGTA-AATGGAAGGAGGAAGG-TTTATGAATCCCCAGGCGAC--------TTGCAGCA------ACAAACTACAGGAA---------------CCAAATTCGTTTATTACGTATGCCgac-aaaaaacg---------------------------ttttgc-------cATACTGAGCCTTGCCTGCGCAAAAATGATGTAAAGCACCATTGAGAGTT--TCGA-----------------CGATGC--AGCGGAGGCTTCTCACACCTTGCGGACCCCTCAAATTCTCCAAGGGAA---TATA-GGAATGAGTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   248774 298 -   357190 AACAAAATGA--AACATTTTCTGTGCC--------------------------------ATAGGACAGACAA-AAGTGA-AAGTAAAAATGCAAGG-TTTATGAATTCCCAGGCGGCCGAACAATTTTAAGC-------GCAAACTTCAGGAGCTCTCGGTCCGTCCTCCCAATTCGTTTATTACGTAAGCCGAC-AAAAAGTGAGCAAAGCAGACGCCCGTGCCCTTCCTTCTTGC-----------CTGC---CTGCCTGCccgaaaatgatgaaaagcACCATTGAGAGTTTCTCGC-----------------CGATG--------------CTCACACCTTTTCC--GGGTCCAATTCTCCGGGGGGAATGAACG-AAAATCAGTC
i caeJap4.Scaffold17990 I 1947 I 5356

a score=110719.000000
s ce10.chrX              5748780 390 + 17718866 GTCGAAATTGG-----AAGGCGAGAAAGCAGACTTTGTA--AAAAGTAGAAA----GCGTCTCACTGGCTTT-GCA-----AA-----AAAGAAAGAAACCACA---GAGTCTACTAAG------CAA----------------------AGAAATAAAAAGAAG-----AGACAGTAGTGG--GTTGTGTAAAGGTATTATGTATTATTTCATATGTTGCAACTATAGATCATCTTTTTTTTTCTTGACAAAGAT------------------TGAGTGCACAGAGAATGAAATT------TTAAAAGAAAACCAACAACTAGATTTAAAATTAGACT-----AGAAGCCGGATTTCG---AATGA--ATGTGGGTTGAACAGA-TTTGGAGATG---TGTGACATCGGCTGTGTGGAATTGAAAATAGAGCGGTGT-CCTTCT--CTGCGT--CCAAAATCTGACACCT--AGAATCGTGCGATCTTAGAATT
s cb4.chrX              11078203 398 + 21540570 gtcaaaattgggaaaaaaggcGAGAAAGCAGTCTTTgtt--aaaggaaaaaa----atgt----gtgtatTA-GGAGATGAGACATGGAAACAAGCACAACACACGAAAACGTATTGTG------CAG----------------------Acccaagaaaagaaag----aaagagtaGTTGCCTTAGTGTGAAGGtatta---------tcatatttttcaactatGGATCAT------GTCTCTTGACAAGAATGAAGGATGGAGAAATATGGCAGCGGTGGGAAGAGAAAGgg--------agaaaaaatacaa-------atttaaaattagacT-----AGAAGCCGGATTTCGGGAAAAGA--ATGTGGGTTGAAAAAGATTTGCGGATTCGCCGTGACATCg----------------ctttttgttctct-ttttctggttttgatttaaaaaaatgacacCTTCAAAAACATGTGATCTAGGGAAT
i cb4.chrX              C 0 I 252
s caeRem4.Crem_Contig0   2449992 375 -  4500979 GTCGAAATTGG-----AAGGCGAGAAAGCAGTCTTtgtt--agaagaaaaaaagagaggc----cTGGTTTA-Gga---gaaaca---gagcaaagaaaacaca-gaaaatgtattgtgt-----tag----------------------gaaaaaagaccaaaaa----agagagTAGTTCCCGCAGTGTAAAGGTATTA---------TCATATATAACAACTATAGATCAT-------TTTCGTGACAAGAGTGAAGGATGAA--------GCAGCTGACAgaatggaaaata---tttttgagaaaaatacat-------ATTTAAAATTAGACT-----AGAAGCCAGATTTGG----CAAA--ATGTGGGTTGAAAAAT-TTTGCGGATT---CGTGACATCGGC-------------ACAAGCAGCGTTTC-TTTTCTGATTTCGG-CCAAAAAACTGACACAT--ACAAACACGTGATCTCAG----
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    288034 395 -  1189296 GTCGAAATTGG-----AAGGCGAGAAAGCAGTCTTTGtgcaagaagaaaaaaagt-gtgt----ctgccaccagta---gaaa-----aagcaaaaaaacggcacaaaaatgtattgtgtgttggtag-------------------------aaaagaatgaaaccgaaaaagagTAGTTCGCGCAGTGTAAAGGTATTA---------TCATATATAACAACTATAGATCCT------TTCTCTTGACAAGAATGAAGGATGAG--------GTAGTAGACGGGCagaaaaattccttttttgggAGGAAAACAC-------ATTTAAAATTAGACTGGAATGGAAGCCAGATTCGG----CTGA--ATGTGGGTTGAAAAGA-TTTGCGGATT---CGTGACATCGCC-------------AAAAGCAGCGcttctttttaaatttgcGA--CCAAAAACTGACACCTCC--AAACGCATGATCTAAGAATT
i caeSp111.Scaffold626  C 0 I 382
s caePb3.Scfld02_0       4003445 408 +  4147112 GTCGAAATTGG-----AAGGCGAGAAAGCAGTCTTtgt---aaaaggaaaaaagt-gtgt----ctgctttc-gta---ggaa-----aagcaaagaaa-agcacaaaaaTGTATTGTGTTGTGGTGGTCGCGGTGGTGGTAcgcaaagaacaaaaagaatgagac----AGAGAGTAGTTCCCCCAGTGTAAAGGTATTA---------TCATATATAACAACTATGGATCAT------TTTTCTTGACAAGAGTGAAGGATGAG--------GTAGT-TCtggacaaaaaaagaattttttttggagaaaaacac-------ATTCAAAATTAGACT------GAAGCCAGATTTGA----TAGAGGATGTGGGTTGAAAAGATTTTGCGGATT---CGTGACATCGAT-------------AAAAACAGCGCTTC-TTTTAGGATCGCGA--CCAAAAACTGACACCTACAAAAACACGTGATCTAAGATTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=0.000000
s ce10.chrX              5749170 15 + 17718866 CTGTGTGAGTTTTAA
e caePb3.Scfld02_0       4003853  0 +  4147112 C
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11078601 252 + 21540570 I
e caeSp111.Scaffold626    288429 382 -  1189296 I
e caeRem4.Crem_Contig0   2450367  4 -  4500979 I

a score=3277.000000
s ce10.chrX              5749185 20 + 17718866 TGCCTAATTTTTGAATTAAT
s caeRem4.Crem_Contig0   2450371 20 -  4500979 TGCTTCATCTATAAATTAGT
i caeRem4.Crem_Contig0  I 4 I 215
s caePb3.Scfld02_0       4003853 20 +  4147112 TGGCTCATTTATAAATTAGT
i caePb3.Scfld02_0      C 0 I 381
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11078601 252 + 21540570 I
e caeSp111.Scaffold626    288429 382 -  1189296 I

a score=0.000000
s ce10.chrX              5749205 904 + 17718866  
e caePb3.Scfld02_0       4003873 381 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11078601 252 + 21540570 I
e caeSp111.Scaffold626    288429 382 -  1189296 I
e caeRem4.Crem_Contig0   2450391 215 -  4500979 I

a score=918.000000
s ce10.chrX              5750109 29 + 17718866 TGAAACATTTACGAAAGTGC------ATTTCTCAG
s caeRem4.Crem_Contig0   2450606 35 -  4500979 tgaaaaatttacgagattgttttcatgtttctctT
i caeRem4.Crem_Contig0  I 215 C 0
e caePb3.Scfld02_0       4003873 381 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11078601 252 + 21540570 I
e caeSp111.Scaffold626    288429 382 -  1189296 I

a score=-1220.000000
s ce10.chrX              5750138 150 + 17718866 -TGGTGCTTACGTTTCAAGTGCTGAGAATGTGAGGCGGATGACCGAGTGTGAC-TAGACAACAACCGTTAGGGAGCTTAT-------------TAGTATGATTC-----AAATACTTAAGCT-ACATATCCTCATAACTTTTGCA--TTTGACTCATCACGACGGCTAATTTT
s caeRem4.Crem_Contig0   2450641 146 -  4500979 TTGGCGTAAGCGTTTCAAGTGCAGACAA----------------AAGGGAGACATAGCGAGCGTAC------AAAATTATGTACGTTCTAAATCAGCACTATCCAACCTAGACGCCATACCT-ATGTAT----aagaattttaaatgtttgacTCATCTGATAAGATGATTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4004254 129 +  4147112 -TAGCGCAAGCTCTTCAAGTGTTGAGTT----------------GAGTGTGAC-TAGAG-------------GAATCTGTGTAC-TACTAG--CAGTACAATCT-TTCTAGACACACCCCCTAACACAT----GAAATCTCCAAGT-TTTGACTCATCTGATGAAgtat----
i caePb3.Scfld02_0      I 381 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11078601 252 + 21540570 I
e caeSp111.Scaffold626    288429 382 -  1189296 I

a score=-1870.000000
s ce10.chrX              5750288 11 + 17718866 GAAATTAGAGA----
s cb4.chrX              11078853 11 + 21540570 gaaatttggaa----
i cb4.chrX              I 252 C 0
s caeRem4.Crem_Contig0   2450787  2 -  4500979 ---------AA----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4004383  9 +  4147112 ------caaaaatga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeSp111.Scaffold626    288429 382 -  1189296 I

a score=16864.000000
s ce10.chrX              5750299 464 + 17718866  
s cb4.chrX              11078864 467 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2450789 504 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    288811 365 -  1189296  
i caeSp111.Scaffold626  I 382 C 0
s caePb3.Scfld02_0       4004392 592 +  4147112  
i caePb3.Scfld02_0      C 0 I 398
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=-19877.000000
s ce10.chrX              5750763 172 + 17718866 TCATGTAGTGGTTAGACTATGTTAAA------GTGCTTCAAACAGGTCTAGCAGTTTGCTCTAGAATATATACAATTTTCT---------------TCAACATATTATATTCTGTCATTTTCGGCGAAAATCTTACATATGTGTCTTCTTTGATTATCATTAACAGAACGCATTTATCAAATCAGAGATTATG
s cb4.chrX              11079331  87 + 21540570 TGTTACGGAG--------TGATTATTAGgagtttgtttt---------------------tcaaaa----------cttca-----------------aaactataaaatt-------------tcaa---------CAGTCGtcc-----------------------atattcaaaaaataatatg-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2451293 132 -  4500979 TCTGACAGTGAAGTCCCTTAATCAGTAAAA--TTGTTTT------GCCCGGGATACTGTATCAAAAACTCCC---TTTTCAAGTTTCTTGC-----TCAATCAATTAAATTG----AGTGTTTCTGAA---------CACAAAACT-----------------------GTATTTAACAAAGAA---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    289176 128 -  1189296 ---------------------tcatt------ttgattt------gtcTCAGAGTTTTAGTTAAAAATTGTG----TTTCACGGTAATTGTGTTCATCGAAATGTAAAAatgaatcagtttttttgaaagttt----cagTTCTCT------------------------TCCTGAAAAAACCAGATGTTATG
i caeSp111.Scaffold626  C 0 I 149
e caePb3.Scfld02_0       4004984 398 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=-5145.000000
s ce10.chrX              5750935 104 + 17718866 ATTTTTCAAGGGGAAATCATTATGAAAAGCAGGCCTATTTTATTCTTA--TTGAATAAAAGATAGAATAGGGAATAAACTGAAAAATTAGTTTTGCTCATGTATAT
s cb4.chrX              11079418  64 + 21540570 atCTGACACTGGCGGTCAAACA-----------------TAATCCGTAGGCAAAACATAATACAAATGGCGG----AACTAAAAA---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2451425  60 -  4500979 -----------GAGGTTGAATAAG---------------GATTCCTTA--CTTTTCATAGGATAA-----GG----AACTAAAAA-------TTG--TATGAACAC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4004984 398 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeSp111.Scaffold626    289304 149 -  1189296 I

a score=-1799.000000
s ce10.chrX              5751039 101 + 17718866 TTATACATAGACAGAGAA--------------------------CGAAA---AGTCACACTGAAACCGGTAAGTTCAGAGAT--------GCTGAAAAA-TTACTTCCACCTGCA-GTTCCGATGGCATT-----TTTCTTAAAA----
s cb4.chrX              11079482  94 + 21540570 --------------------------------------------GGAAG---CGTTACGtcaaaaatgtctcattcACAATTGGATAccacaaaaaacatttaataCCACCTG---tatcttttctcatt-ttatatTCTTAGCA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2451485  90 -  4500979 -------------------------------------------TATATG---TGCTACGTCAAAAATGTCTCATTCGTAGAT--------CCGATAACATTTAATCCCACCTGCT-TAGCCGGCCTCCTCAATGTATTCTTAGCC----
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       4005382 140 +  4147112 TCGTCCATAG-TTGAGAACCAGAACAACTCCGATCAGAACGTTTATATACATCGTGACGTCAAAAATGTCTCACCCATAGAT--------CCTACAACATTTAATCCCACCTGCTCTTCCTCCCCTTCACATTTCATTCTTAGACCTTA
i caePb3.Scfld02_0      I 398 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeSp111.Scaffold626    289304 149 -  1189296 I

a score=95360.000000
s ce10.chrX              5751140 389 + 17718866  
s cb4.chrX              11079576 484 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2451579 417 -  4500979  
i caeRem4.Crem_Contig0  I 4 I 1953
s caeSp111.Scaffold626    289453 372 -  1189296  
i caeSp111.Scaffold626  I 149 C 0
s caePb3.Scfld02_0       4005522 425 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=974.000000
s ce10.chrX              5751529 13 + 17718866 GCTGTACGAAAAC
s cb4.chrX              11080060 13 + 21540570 gtcgaaaaaaaac
i cb4.chrX              C 0 I 3166
s caeSp111.Scaffold626    289825 13 -  1189296 gctGAATGGAAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4005947 13 +  4147112 gaaaagaaaaaga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=-2841.000000
s ce10.chrX              5751542  6 + 17718866 ATTCAA-------------------------------
s caeSp111.Scaffold626    289838 37 -  1189296 TtgtatgaaaaagaaggaggcgTTCGATAAGATTCAA
i caeSp111.Scaffold626  C 0 I 353
s caePb3.Scfld02_0       4005960 15 +  4147112 aagtaagaagacgaa----------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=56.000000
s ce10.chrX              5751548 118 + 17718866 GGCGTTCAAACAATTTAATTGAGTGATATCTCAAACTTTTGGGGTTTGGAAATGTAACGAAATGCAACTTCGCACTTTTATTCTTTGATTCTG------------AAAAGAATCTGCTCATAATCAGCAA
s caePb3.Scfld02_0       4005975 109 +  4147112 gGCGTTCGATGAGATTCACT--------TTACGAAC-------------AAATAAATAgagtttcaatgatttttttttgttctttttttttgagggggcACCTTAAAAGAATTGCATTGGAAAGGGCAA
i caePb3.Scfld02_0      C 0 I 77
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeSp111.Scaffold626    289875 353 -  1189296 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=0.000000
s ce10.chrX              5751666 67 + 17718866 TTATTTGCAAGAAACTTCAAACCACACTATTCGAGCTCAAAAGTGCAAAACAATCGAAATGAAATGA
e caePb3.Scfld02_0       4006084 77 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeSp111.Scaffold626    289875 353 -  1189296 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=2739.000000
s ce10.chrX              5751733 66 + 17718866 AGCGTTTTTGATT--TGCGAGCTTTGAGAGCAAATGTGATAAAAGTGAAAATTCGTTTCAAAGTGAAA
s caePb3.Scfld02_0       4006161 68 +  4147112 AGCATCATTCATTCCTTCGGGATTGAAGGgtaaatgtgataaaatcgaaaatgcgttgaaaattgaaa
i caePb3.Scfld02_0      I 77 I 671
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeSp111.Scaffold626    289875 353 -  1189296 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=0.000000
s ce10.chrX              5751799 771 + 17718866  
e caePb3.Scfld02_0       4006229 671 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeSp111.Scaffold626    289875 353 -  1189296 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=2827.000000
s ce10.chrX              5752570 213 + 17718866 TCAGAAAAATGTTTGAAAAAAAAACTTAAAGGATTATAACATTTACTATTTTTAATCTCAAATTTGTTTTCAATAAAATGTGTGAGATCAAAAACTGATTGAATGTACAGGTCGCAAAAGAACAAAATAT----TGACCTTTGGAAAATACAAT--AAAACTTGTCGGAAACTGCTTGAGGGCGTTTTAACGGTAAAAGACTAAAGTTTC--AACGGTCAA
s caeSp111.Scaffold626    290228 195 -  1189296 TCTGaatggtttttcaaaagcaaCCACCAAGCATTGCAA-----ACTATGTTGA---CCAAACTAG-----ACCAAACTGTATAGAAACGGTAGTTCATTCA---------TCACAGGAATGCGAAAAGTGACCTGACCTTTTGAAG-TGTAACTAAAAACTTGTCA-AAGTTGTTTGCGGACATTTTAACGG--AAAAACCAAGGTTCAAGAACGGTCAA
i caeSp111.Scaffold626  I 353 I 401
e caePb3.Scfld02_0       4006229 671 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=0.000000
s ce10.chrX              5752783 149 + 17718866 CAACTAGAGAAAAATGTTCCAAGTGGAGTTTCCATTTAATTGAAAAAAAAGTGGAACATATGTATAATAAAATGAAAGTTTTTAGTTTCTACAAGATTTTATGGATACTATCGAAATATTTTTTAAAGTCGTACATCACTCGTCGTCAC
e caePb3.Scfld02_0       4006229 671 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I
e caeSp111.Scaffold626    290423 401 -  1189296 I
e caeRem4.Crem_Contig0   2451996 1953 -  4500979 I

a score=219.000000
s ce10.chrX              5752932 4 + 17718866 AAAA-
s caeRem4.Crem_Contig0   2453949 4 -  4500979 -agac
i caeRem4.Crem_Contig0  I 1953 C 0
s caeSp111.Scaffold626    290824 4 -  1189296 -agac
i caeSp111.Scaffold626  I 401 C 0
s caePb3.Scfld02_0       4006900 4 +  4147112 -AGAC
i caePb3.Scfld02_0      I 671 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11080073 3166 + 21540570 I

a score=48757.000000
s ce10.chrX              5752936 157 + 17718866 AAAAACTCTC-AAGGATCTCACCCTTAA-TAAAAT--------GACAAAC----AGCGAAAATTGAAAGGCCCGAAGC-------TAAATCAAAAGAGCGCATCTTCTCTCATCCT--GCTC--AAAATGGATGATCAACTGC-TAATGTGTTTTGTTTTGCTTCACTGACCTCA-TCTTTTTT
s cb4.chrX              11083239 169 + 21540570 aaaaacactcaaaaaattccatcCTTAAGGAATAA--------GCCAAAC----GTCGAGAGGTT-GAAGTCTGAAGTAAACCAAAAGAGCGGCAAAGCGCATCATCTCTGTCTTTAAGTCTCACAAAGAATTGATCAAATGCATGATGTGTTTTGTTTCGGATCAGTAACCTCA-TCCCATT-
i cb4.chrX              I 3166 C 0
s caeRem4.Crem_Contig0   2453953 160 -  4500979 aaaaacactc--aaaatccCACCCTTAAGGATAAA--------GCAAAACGAAAGTTGAGAGA----------GGAGTTAgttggaaaatcaaaagagCGCATCATCATATGCTGT--GTCTCGTAAAGGAATGATCAGAAGC-TAATGTGTTTTGTTCCGCTTCAGTAAcctcgttttcatt-
i caeRem4.Crem_Contig0  C 0 I 1081
s caeSp111.Scaffold626    290828 163 -  1189296 aaaaacactcaaaaaatcccaCCGGTTAGGAAACTCGAAAGCAGACAAGG----ATTGAGAGA---TAGGTTTGAAGT-------AAAATCAAAAGAGCgcttcatctt---ttct--ctctcaaaaatggATGATCAGAAGC-TGATGTGTTTTGTTTCGCTTCACTagtctca-tttcattt
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       4006904 152 +  4147112 AAAAACACTC-GAAAATCCCACCCTTAAGGAAAAT--------GGCAAAA----GTTGAGAG-----GGTCTTGGAGC-------AAAATCAAAAGAGCGCATCATCAT---CTCT--GTCCCAAAAATGGATGATCAGACCC-TGATGTGTTTTGTTTCGCTTCACTagtctca-tttcattt
i caePb3.Scfld02_0      C 0 I 1151
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=953.000000
s ce10.chrX              5753093 10 + 17718866 GACTCTTTTC
s cb4.chrX              11083408  8 + 21540570 --CTCTCGTT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    290995 10 -  1189296 gcttcttttc
i caeSp111.Scaffold626  I 4 I 857
e caePb3.Scfld02_0       4007056 1151 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeRem4.Crem_Contig0   2454113 1081 -  4500979 I

a score=197.000000
s ce10.chrX              5753103 7 + 17718866 AAACTTC
s cb4.chrX              11083416 7 + 21540570 CGATttc
i cb4.chrX              C 0 I 2709
e caePb3.Scfld02_0       4007056 1151 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e caeSp111.Scaffold626    291005 857 -  1189296 I
e caeRem4.Crem_Contig0   2454113 1081 -  4500979 I

a score=0.000000
s ce10.chrX              5753110 1029 + 17718866  
e caePb3.Scfld02_0       4007056 1151 +  4147112 I
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11083423 2709 + 21540570 I
e caeSp111.Scaffold626    291005  857 -  1189296 I
e caeRem4.Crem_Contig0   2454113 1081 -  4500979 I

a score=938.000000
s ce10.chrX              5754139 49 + 17718866 ataTATAAGAATAACATTATTGGAAAATCAATTTGTTATTTAT------AGATTC
s caePb3.Scfld02_0       4008207 51 +  4147112 ATATAACAGAA----ATCACTGTGCACTTGTCTTGTTATTCATGAAACAAGATTC
i caePb3.Scfld02_0      I 1151 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11083423 2709 + 21540570 I
e caeSp111.Scaffold626    291005 857 -  1189296 I
e caeRem4.Crem_Contig0   2454113 1081 -  4500979 I

a score=-572.000000
s ce10.chrX              5754188 53 + 17718866 ATCTTGTTTCTTAATAAAAATATTGTGAAAAA----------CTCTAAACAAATAAA-AATGGT
s caeSp111.Scaffold626    291862 53 -  1189296 atctcagttcatcaagaaaaaatggaaaagagatt-------cCCGAAGCAAGT----AGTCAT
i caeSp111.Scaffold626  I 857 C 0
s caePb3.Scfld02_0       4008258 56 +  4147112 --------TCCTTTAAAGAAAAAGGATATATAACTAGTTTGACTTAAAGTGAGTAGGCAGTCAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11083423 2709 + 21540570 I
e caeRem4.Crem_Contig0   2454113 1081 -  4500979 I

a score=12113.000000
s ce10.chrX              5754241 40 + 17718866 CTTTTTCGAGATTTCGATAAAATAAAGTTGTTAGAAAGCA
s caeRem4.Crem_Contig0   2455194 40 -  4500979 CTCCTCCTGAAATTGGATAACAAGGAATTGTCAAAGaaca
i caeRem4.Crem_Contig0  I 1081 C 0
s caeSp111.Scaffold626    291915 39 -  1189296 -TCCTCCTGAAATTTGATAACAAGGAGTTGTCGAAGAACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4008314 39 +  4147112 -CCCTACTGAAATTTGATAACAAGGAATTGTCGAAGAACG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I
e cb4.chrX              11083423 2709 + 21540570 I

a score=2852.000000
s ce10.chrX              5754281 32 + 17718866 GAATAAATGCAGAAA--ACACATAAGGGAGTGGG-----------
s cb4.chrX              11086132 29 + 21540570 --------GAAAACA-TACACAAAAAACAAGAGC-------AAAG
i cb4.chrX              I 2709 C 0
s caeRem4.Crem_Contig0   2455234 44 -  4500979 aaataaatgaaagaa-aacacACAAGAGAGCAACGTTTTTAAAGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    291954 30 -  1189296 AAATGAgcgaagaaa----acagaagagaacAGG-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4008353 35 +  4147112 AAATAAACGAAGAAAACACACATAAGAGAGCAAA----------T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   249072 5356 -   357190 I

a score=66156.000000
s ce10.chrX              5754313 103 + 17718866 AGATGTACGGCTTCACA-----GA-------------AAAGTGTCAGAAATCAAATATAGATACTTTTCGAGAGTATGTGTTTATGCG-CATTT---------------TCGTCATGTCTCATTACATCTGATGAGC
s cb4.chrX              11086161 121 + 21540570 CGATGTACGGCTTCATC-----GAGAAAGG-----GGAAAGTGTCAGAAATCAAATATAGATACATTCGGAGTGTA-----GTGTGAg-cctcttctctttttttcttctcgtcATGTCTCATTAGATTTGATGCCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2455278 103 -  4500979 AGATGTAGGGCTTCATC-----TA-------------AGAGTGTCAGAAATCGAATATAGATACATTCCGAGAGTGAAGATGTATACG-TTTCT---------------TCGTCAAGTCTCATTACATCAGATGCGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    291984  97 -  1189296 AGATGTACGGCTTCATC-----GA-------------GAAGTGTCAGAAATCGAATATAGATACATTCTGAGAGT------GTATGCT-TCTTT---------------TCGTCATGTCTCATTACATCAGATGCGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4008388 103 +  4147112 AGATGTACGGCttcttcatcgaaa-------------aaagTGTCAGAAATCGAATATAGATACATTCTGAGAGT------GTGTGCCGTTTCT---------------TCGTCATGTCTCATTACATCAGATGCGC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   254428  94 -   357190 AAATGTAAGGCTTctac-----gagaaaaaaaactagaaa-----agaaATCGAATATAGATGCATTCTGAGAGC------------G---------------------TCGTCATGTTTCATTATGTCAGATGAGC
i caeJap4.Scaffold17990 I 5356 I 4343

a score=9321.000000
s ce10.chrX              5754416 16 + 17718866 AGGAGACTTTTGTTTT
s cb4.chrX              11086282 15 + 21540570 atga-acttttgtttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2455381 15 -  4500979 CTGA-ACTTTTGTTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    292081 15 -  1189296 CTGA-ACTATTGTTTT
i caeSp111.Scaffold626  C 0 I 219
s caePb3.Scfld02_0       4008491 15 +  4147112 ctga-acttttgtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I

a score=-619.000000
s ce10.chrX              5754432 12 + 17718866 CTACATATGTGA----
s cb4.chrX              11086297 12 + 21540570 ----ttgtatcAGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2455396 10 -  4500979 ----ATGTatcaaa--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4008506 12 +  4147112 ccacttGTATGA----
i caePb3.Scfld02_0      C 0 I 546
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292096 219 -  1189296 I

a score=1427.000000
s ce10.chrX              5754444 20 + 17718866 ATTGCAATAAGTAAGAGAAT
s cb4.chrX              11086309 20 + 21540570 Tggacagaaaagaagaaaat
i cb4.chrX              C 0 I 547
s caeRem4.Crem_Contig0   2455406 18 -  4500979 --ggaaaaaagaaagtaaat
i caeRem4.Crem_Contig0  C 0 I 738
e caePb3.Scfld02_0       4008518 546 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292096 219 -  1189296 I

a score=0.000000
s ce10.chrX              5754464 1231 + 17718866  
e caePb3.Scfld02_0       4008518  546 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11086329  547 + 21540570 I
e caeSp111.Scaffold626    292096  219 -  1189296 I
e caeRem4.Crem_Contig0   2455424  738 -  4500979 I

a score=191.000000
s ce10.chrX              5755695 33 + 17718866 ACGAAATGATAATGTTCAGTGAATGACTTTTGT
s cb4.chrX              11086876 30 + 21540570 ATAAACCAAGAAGGTTCAA--Agcgagttttg-
i cb4.chrX              I 547 C 0
e caePb3.Scfld02_0       4008518 546 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292096 219 -  1189296 I
e caeRem4.Crem_Contig0   2455424 738 -  4500979 I

a score=100.000000
s ce10.chrX              5755728 1 + 17718866 C
s caeRem4.Crem_Contig0   2456162 1 -  4500979 C
i caeRem4.Crem_Contig0  I 738 C 0
e caePb3.Scfld02_0       4008518 546 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11086906 0 + 21540570 C
e caeSp111.Scaffold626    292096 219 -  1189296 I

a score=1630.000000
s ce10.chrX              5755729 27 + 17718866 GTAATTCGCCTAATGCAGCCAACTAAT----
s cb4.chrX              11086906 27 + 21540570 aaaattggtccAATAGAACCAACTTTC----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2456163 27 -  4500979 GTGAATCGACTAATGCGGCTAActaaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4009064 22 +  4147112 ---------GTAATTCGGCTAACTATCAATC
i caePb3.Scfld02_0      I 546 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292096 219 -  1189296 I

a score=-13178.000000
s ce10.chrX              5755756 175 + 17718866 GTGACTCATTCTT-TCAAATTTGGCCTGTT----TTGAGAGAGAAGAGCAGACGACAAAAACAGAAGA---------GAAAAAAAACGAAA-ATTGAAAAAT--------GAATGGAAAAAGGCCAAAAGAAAATTAATCCAATTAATTT-----------------------------------------GGGATTTTCCATAAAACTTTTTTTTTTTTTGATCCATTGTAACAACCA
s cb4.chrX              11086933 166 + 21540570 GTGACTCAACTTG-TTAAATTTGGCT-----------TATTAAGGGTCAGAATAagaaagtaagaa------------aaaaaaacaaaaa-gatgaaTAACATATATATTAGCAACAA------GAAATAAAACT--TGGGCTGAAATT-TGTGCCACT-------------------------------TGGGCTCCTCATGt-------ttttttAC-GGTCCGATGAAATAATTA
i cb4.chrX              C 0 I 27
s caeRem4.Crem_Contig0   2456190 133 -  4500979 atgagtcattttg-tCAGATTTGGCTAGTT----TTATACGaaaaaccaaacagaaaaaaaaagaatgaa-------taagtaaaaaaaaa-agtgaaaaac--------tgacaacaa-----taaaagaaaaCC--TTCAAGAAGAT-------------------------------------------------CTCATGT-------TGCCA----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    292315 201 -  1189296 gtgattcattttt--caaatttggcCTATTAAAACTACATGATTAAcgcaaaaaagaagaaaaagaaaaaacat---taagGAAGATGAAAGAATGAGCAAT--------CGACAAACG-------AATGAAACCT--TTCAAGGAAATTATATGTTGCTAGTTATCCCGAATAAGttggaaaacaa----tttgtttCTTGGAAA----CTTCTCTGACTGATCTAATGG--------
i caeSp111.Scaffold626  I 219 C 0
s caePb3.Scfld02_0       4009086 211 +  4147112 ATGACTCACTTTTCCCAAATTTAGCCTATTATAGTTTCCC-ATagacaagaatgaaaaaacaacgaaaacacATAGataaattagaagaaa-aatgagcaat--------ggTCCAATG-AGACAAAGTGAAACCT--CTCAAGGAGATTATATGTTGCTAATTATTCCGAATAAGTTGGAAAACaaaacgtcttcttctcaGAA-------TCCAAGTTTGATCCTTTTG--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I

a score=-8862.000000
s ce10.chrX              5755931 33 + 17718866 ACTTTTAGTGATA--AAGC--AGGCATCACTTATTTG---------------------
s caeRem4.Crem_Contig0   2456323 55 -  4500979 ---ATTAGGAGCGATAAGTTGGGAATTCATTTGTTTCTGGGAAGCCCGTCAGTCTGAA
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626    292516 14 -  1189296 TCATGCAGAGAAG------------------------------------------G--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4009297 34 +  4147112 TCCTCTAGCAAAGATAAGT--GAAAGTGA--TGTTTC------------------G--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11087099 27 + 21540570 I

a score=81829.000000
s ce10.chrX              5755964 396 + 17718866 TGAACtaatttt--taaaaaatttta---aaGCT-----------------------TTTATACAAGCTTCA--------------AAGCTTGGTAGTTGATCAAAAATTGCTGGTGGA---GC------CCAAAAAACGG---AAACTGGGGAGGG-CGAATAGGATAGCGAAATCATCACTGAAATGGTGCAGAATATTGACCCTAATCGTGTTAGTGATCCGTTGCCTCCGAGTCAGAGGACATCGCGAGTGCTT--GTCTATTTTATACGAATCTCAGGCAAT----------TTCTATTTTTT---TAAA-----ATAGATTCAGAATTGCAAGATTTTGAAGACGATAAGTTGACGTCCCAAATCGCACGTTCGCAAGACGAAACCCGGCTCGA----AATTAGACGGATA----CGCGAAA-----------AGGAATGATTAAAAACAAAAGAA-ATGCGTGCAACAGAAACAATTACGTTGA
s cb4.chrX              11087126 423 + 21540570 TGAAATAACTAA--CCAGAAATT------GAAAGCAATAACTTTTAGACATTCAGAATTCTCAGGacacttt---tttgtctttcgaaaatcgctagcgaatcaaaattt-----tttt--ttcagtggacaagctaagaa---aaa-------------aaggaaataggGGAAT------AAGAATTGTGCAGATTATCGAATCTAATCGTGTTAGTGATTTGCCATTTCCGAATCGGAGGACATTGCTTGTGCTCCTCCTTGCTCATCCAACATCACTCACACTATTTAACGAGAACATTTTCTC---CAGT---------------------GAGATTCAAATGACGAtaaattgacataaaaatcGGCACGTTCACCAACCGAAAAAGAGCTCTATTTCATTAAGAAGGGTA----CGCAAGAAAGATGGGATGAAAGAAGaatcaaaacaacaaaatacgCGTAAAATGAGTGCAATGACGTGAA
i cb4.chrX              I 27 C 0
s caeRem4.Crem_Contig0   2456393 399 -  4500979 tatgTCAGCCTT--GCATGAGGG------AAATGTAAAAGTTT-------------GTTTTTATAACGCTT-----------------GACCAGTagataatcaaaaattggtgcctat--ttc------caaaaaaggga---aaagtaGTGTGGG-CGAATAAGATAGGGAAATCATCAACAAAATGGTGCGGAATATCGAATCTAATCGCGTTAGTGATCCGCCATTTCCTAATCGGAGAACATTGCGAGTGCTC--GCATATTTGCCCTCAATCTCCGACAC-----------aactatttttc---caattcacAAAAGATTCAG------GAGATTCAGATGATGATAAATTGACGTCCCGATTCGCTCGTTTACCAAATG---TAGGGCTCTATTTCCTTTAGAAGGATA----CGCA-------------GAAAAAGGAATCAAAACATCAGATTACGGCTAAAACGAGTGCAATGACGTAGA
i caeRem4.Crem_Contig0  I 15 I 1866
s caeSp111.Scaffold626    292530 378 -  1189296 -ATAACA-------TCAAGAGTTCTG---GAGAT-----------------------GTCCAGCAATGTCCC--------------GATGCTAATAGTGGATCAGAAATTGGTGGCTATCCTCC------ccaaaaaacaggaaaaagcAGAGTGAGCCAAATgagattgaaaaatcatcaagAAAATGGTGGTGAATATCGAATCTAATCGTGTTAGTGATCCAGCGTTTCCGAATCGGAGGACATTGCGAGTGCCC--GCTTATGTGCCACGACTCTCGGACAC-----------ATCTACTTCTC-------------GAATTCGAA------AAGATTCACAAGACGATAAATTGAAATGGCGATCAGCACGTTCAACTGACG-----AagctttttctcatttggaaATGTG----CGcaaga------------------aatcaaaacaacaaaagaCGCTTAAAACGAGTGCGATGACGTGGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4009331 422 +  4147112 -AGAACAATTTATTTCTAgaattctatttgaattcaaactttt-------------ggtTTAGTGATTTACTAGGcgaatgaataaaaaactggGAGCAGATCAAAAATTGGTGGCTAT-CTGC------CaaaaaaaCAT---AGAGTAGCGTGGG-CAAATAAGAtagaaaaatcatc----aaatggTGCAGAATATCGAATCTAATCGCGTTAGTGATCCGCCATTTCCGAATCGGAGGACATCGCGAGTGCTC--GCTTATTTGCCATGGCTCTTGGACAC-----------ATCTACTTCTCTTTCAGT-----GGAGATTCAC------AAGATTCAGATGACGATAAATTGACATGCGGATCCGCACGTTCACCAAAAA-----GGGCTCTATTTCATTTGGTGAAGGGGTACCCTAAGA-----------AGAATAGaatcaaaacaacaaaatacgCGTAAATCGAGTGCAATGACGTGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I

a score=773.000000
s ce10.chrX              5756360 30 + 17718866 ATACGGGGGTTTTGA-----------------GAATACAATAAAAAA
s cb4.chrX              11087549 44 + 21540570 --ATCGGAT-TTCGGAGAAAAGGAAACTTCaagaaaacaatgaaaga
i cb4.chrX              C 0 I 2698
s caeSp111.Scaffold626    292908 36 -  1189296 --ATCAGCTATTCgacaaaaatg---------gaaaacaatgaaaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4009753 31 +  4147112 --ATTGGCTTTTTcgagagaata---------gaaaa-----aacaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=273.000000
s ce10.chrX              5756390 1 + 17718866 T
s caeSp111.Scaffold626    292944 1 -  1189296 t
i caeSp111.Scaffold626  C 0 I 1856
s caePb3.Scfld02_0       4009784 1 +  4147112 t
i caePb3.Scfld02_0      C 0 I 885
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11087593 2698 + 21540570 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=0.000000
s ce10.chrX              5756391 2839 + 17718866  
e caePb3.Scfld02_0       4009785  885 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11087593 2698 + 21540570 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=3305.000000
s ce10.chrX              5759230 340 + 17718866 AATGAGCACGTGGGAAATTGAAAAAAAAACTCTGAAGTTTATTTCTGCATTTGTGTTT--------------------------------GGCTGATTACCAAATAGACCGAGACGGAC-------------------TTCAAACTCAGCGGAGTT-------CTAAAAA-------------------GAGATAGAGAAAAGTCGAAGTTTTATGTTGCATTCTGGAAACGACTGGAATCAAAAATTAGGTAC--GATTTTAATGATGTTTCAAATCGCATATTATAAGACCTAGACGTATAT-AACTCAAATTACTTAAAGTTCCGTAAAGGAAATAAAAATAA--TAAGAAATTGGAGACGTAGTCCCGTAGTTTTGATAGATTTGTAGCATCGGTCAACAGGAAAACAAAGCACAAAT
s caePb3.Scfld02_0       4010670 404 +  4147112 AATGAGCACGTGGGAAATTGAAGTAAAAACt-ggaagtttcattttcaattcatgttttctcattcaaaattttcagtctagAAAGAAGAAGCGAATGACCAACCGGAAAAGAGCGAATATGCTTTTTGACAGCACCACTCAAACCCGTTTTGGatatcaaaactaaaaaagtatTCCATCATTTGACCGGAATAGAATATGGTTTCACTTTTCCGACATGTT-------TGACTGGAATATTCCAGAAGATTCCAGATTTCGTGGGTGTTTCAATGAACATTGTAGAAAATCTAGACACATGGAAAAGGAGACTTCTTAAAGATTGTTGAGCAGAATGAATATAAATAAGGAAACCGGAAACCTAGTTCC----------TGGATATGTGCAGATGGTTGAgtgcaaaacaaaacatgaat
i caePb3.Scfld02_0      I 885 I 5303
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11087593 2698 + 21540570 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=0.000000
s ce10.chrX              5759570 832 + 17718866  
e caePb3.Scfld02_0       4011074 5303 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e cb4.chrX              11087593 2698 + 21540570 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=358.000000
s ce10.chrX              5760402 142 + 17718866 TTTAAAACTAT----TTGAGAGATCCGATC--AAAAATCAGATTTCTGATGA-------------AAGATCGAGAGCGGGAGAGAGAGAGAGTTAGTGTAAGAAATAAAGTTATGCAAAGGAACATCTAATGATGACAACTTGTTGTGCTTTCGTTTGGAT
s cb4.chrX              11090291 130 + 21540570 TTGAAAGCTATGTAATTCAGAGATCTGACCGGAAGATTCACTCTTCCGATCATGCAATAAAGTAGAACATCGAGAACAG------------------------AATAACACTGAACA---GAACATTTA----TGACAGTTTAGAGAACTAGAAATAGAAC
i cb4.chrX              I 2698 C 0
e caePb3.Scfld02_0       4011074 5303 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I
e caeRem4.Crem_Contig0   2456792 1866 -  4500979 I

a score=300.000000
s ce10.chrX              5760544 1 + 17718866 G
s cb4.chrX              11090421 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2458658 1 -  4500979 G
i caeRem4.Crem_Contig0  I 1866 C 0
e caePb3.Scfld02_0       4011074 5303 +  4147112 I
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I

a score=1380.000000
s ce10.chrX              5760545 3 + 17718866 GAG
s cb4.chrX              11090422 3 + 21540570 GAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2458659 3 -  4500979 GAG
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4016377 3 +  4147112 GGG
i caePb3.Scfld02_0      I 5303 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I
e caeSp111.Scaffold626    292945 1856 -  1189296 I

a score=-4278.000000
s ce10.chrX              5760548  8 + 17718866 ----------ATGGGAAG
s cb4.chrX              11090425  6 + 21540570 -------ATGATG-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2458662  6 -  4500979 -------ATGATG-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    294801 13 -  1189296 ATAGGAAGAGATA-----
i caeSp111.Scaffold626  I 1856 C 0
s caePb3.Scfld02_0       4016380  8 +  4147112 ------AGAGATA----A
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   254522 4343 -   357190 I

a score=78932.000000
s ce10.chrX              5760556 455 + 17718866  
s cb4.chrX              11090431 420 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2458668 439 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 46
s caeSp111.Scaffold626    294814 447 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4016388 446 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   258865 551 -   357190  
i caeJap4.Scaffold17990 I 4343 C 0

a score=-9534.000000
s ce10.chrX              5761011 27 + 17718866 AGCAACGATT--------------ATTTTTTTTCACTTTCA--
s cb4.chrX              11090851  7 + 21540570 ----------------------------------atgttaa--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    295261 21 -  1189296 ----ac-att---------------tttttcttaattttta--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4016834 10 +  4147112 ----a--at-------------------------atttttg--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   259416 39 -   357190 ----ATGATTCAATTAGAAAACgaacattcttttttttttgca
i caeJap4.Scaffold17990 C 0 I 1433
e caeRem4.Crem_Contig0   2459107 46 -  4500979 I

a score=-1902.000000
s ce10.chrX              5761038 25 + 17718866 GAATG-ATCTCATGAGAAGCCTTGTA
s cb4.chrX              11090858 21 + 21540570 tGATT---AGTGATCGGATATATG--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    295282 26 -  1189296 aaattcgaattaaaaGAAGCCGTGCA
i caeSp111.Scaffold626  C 0 I 31789
s caePb3.Scfld02_0       4016844 25 +  4147112 agatg-aCATTAAAAGAAGCCGTTTG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   259455 1433 -   357190 I
e caeRem4.Crem_Contig0   2459107 46 -  4500979 I

a score=-23603.000000
s ce10.chrX              5761063 534 + 17718866  
s cb4.chrX              11090879 365 + 21540570  
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4016869 311 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   259455 1433 -   357190 I
e caeSp111.Scaffold626    295308 31789 -  1189296 I
e caeRem4.Crem_Contig0   2459107  46 -  4500979 I

a score=1097.000000
s ce10.chrX              5761597 2 + 17718866 TT
s cb4.chrX              11091244 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    862272 2 +  1189296 TC
i caeSp111.Scaffold626  n 31789 C 0
s caePb3.Scfld02_0       4017180 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   260888 2 -   357190 TC
i caeJap4.Scaffold17990 I 1433 C 0
e caeRem4.Crem_Contig0   2459107 46 -  4500979 I

a score=71696.000000
s ce10.chrX              5761599 357 + 17718866 ACCTTCTGTTTCCTTCGGAAGACGACGAGTCAGTTTCTGATGATTGTCTGGATGTTGTCGGGCTTAAAGCTTGATTTCCTCCGAACGAAGCTGTCAGTTCTTTCATGACTTTCTGTCGGTTCCAGTCTTGCGGCAATAACACGGCTTCGGATTCAGCAACTATTGGATCAATCCCGGTCATTCTTTTGTGAACCTTGAGCAAGTCGTAGTTGAGGGAAGAAGGCTGGTTCAACTTTTTAACGATTCGCTCTGGAAGATGTTGGAGGATCGAGTCT----TC--TTTCGGT----------------TTTTCA----------GTTGGAT----GAGTTGAAAC--------------------------TGAAGCT------GTGGAAGTTGACGGAATTGCA-----------ATAGATGCGGGAAGTGCTTTCG
s cb4.chrX              11091246 339 + 21540570 ACCTTCTATTCCCATCCGATGAAGAAGAATCAGTTTCTGATGACTGCCTTGAAGTTGTGGGACTCATTGTATGATTTGGTCCCAGTGAAGAAGCCAACTCCTTAATTATTTTCTCTCGATCCCAGCCGTTCGGAATAA---------------CAACAGCTGCTGGCTCAGAATTAGTTCCACTCTTTTGAGAATTCCCAATACTCTGATCAAAAACTGCTGAttgattcagatttttcaatattctttctggaaattcctgaAGTAGCCCTGCT----TC--CACTGA---------------AGCCATTG----------TTTG-AG----GTGGTGGAACAATTGCAGGT----------------ATAGTAT--TCCAGCTGGGATGG--------GGA-----------GC------TGGA---GGTTGtg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2459153 345 -  4500979 ACCTTCTATTGCCTTCTGAAGATgaagaatctgtttctgaagaTTGTCGGGACGTTGTGGGGCTAACATTGTGATGTGATCCTATAGAAGAAACTGATTCTCTCAttactttttgttgattccaGATGTGAGGTAAACTCATAGTTTCTGATTCCACAGCTACCGAATCAACTCCAGTTAGACTTTTGTGAGATTTCAGCgtgttcaaattttgtagtGTTCCTTGATCCAACGTCGTCACCATTTTTTCTGGA------CGATGTTGCATTACA----TC--TTCT-------------------CCTTTG----------CTTGCAG----GCGTTGGG------------------------------GGTAT--TACAGTTGAAACGGATGTGGAAGGA-----------ACGTCAAGTGAC---ACTGGTG
i caeRem4.Crem_Contig0  I 46 C 0
s caeSp111.Scaffold626    862274 405 +  1189296 ACCTTCGATTTCCAtctgaagatgaagaatcgGTTTCTGAAGATTGCCTAGATGTTGTTGGACTAACATTATGACTTGAACCCAAAGAAGATGCCAATCCTTTCATCACTTTCTGCCTGTCCCAGTCATGAGGTAACAGTACAGCCTCGGACTCAGCAACAATCGGATCAATACCAGTTATTCTTTTGTGTGCTTTCAGAAGATCGTAATCATATGGCAATTGCTGATTCAGTTTCTTCACTATTCGTTCTGGTAGGTGATGAA----AGATGTTATCATC--TGTTGGTTTCATCGGTCTCGCATTCTCTGGCGTCAGGGTTTTGGAA---ACTTGTGAAGCAACCGTTGTTG--TCGCCTGTGG---GTAATAT------GTAGATGTTGATGGAGCAGAA-----------ACAAAGTGTTGAACTGGTTGAG
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       4017182 411 +  4147112 ACCTTCTATTCCCGTCCGAAGATGATGAATCTGTTTCTGATGACTGTCGAGAAGTAGTCGGACTGACAATATGGTTTGCTCCTAGTGACGATGCTAATTCCCTCATTACTTTTTGCTGATCCCAGTTATTAGGCAGTAGCACAGCTTCAGTATCCGCAATGATAGGATCTATACCAGTCATTCTTTTGTGAgctctcaaaacttcaaaatcgtATGGCAATTGatgattcagttttttcacaaCTCTTTCCGGAAGATGATGAAGTAGAGATATC----TC--AGGTGGTTTGGTGGTTTTCGCAGCTTCTGGTAATAG---TTTGGAGAGCATTTCTGGGGTGATAGTCATTG--AGGGTTGTGGAACGAAATTTGACGCGGAAGGAACTGCTGGAATTGTA-----------ATAGACGGTTGA---GGCCGCG
i caePb3.Scfld02_0      C 0 I 144
s caeJap4.Scaffold17990   260890 378 -   357190 ACCTTCTATTAGCTTCC---GACGACAAATCAGTCTCCGCAGATTGCCGCGACGTGGCCGGACTCACATACTGATTACAGCCAAG------------CCCCTTCATCACCCGCTGCCGATCCCAGTCTTGTGGCAGCAGCACAGCTTCCGCCTCTGCGACAATCGGATCAATCCCAGTCATTTTCTTGTGTGCAAGCAGCAAATTGTAGTCCGCTCGAAATGGTTGATTGATTTTCTTGACAATCCGCTCCGGCAAATGGCGCAATATCGATTCT----TCAAAGCTGGC--------------GGTTGCTGTC--------ACCGCAA----CTGGCGGAGCATGCGTTGGCGGACTGACA-------acagttt------gaccatttttgtgCGGCGgtgtaaatttttttacattttcttCAATTGGTTTTG
i caeJap4.Scaffold17990 C 0 C 0

a score=578.000000
s ce10.chrX              5761956 16 + 17718866 GAACAACCATTGTTTC
s cb4.chrX              11091585 13 + 21540570 ---gaattttcatttc
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2459498 13 -  4500979 ---GAAGCCGCTGTTT
i caeRem4.Crem_Contig0  C 0 I 126
s caeSp111.Scaffold626    862685 16 +  1189296 GTGTAATTTCCATTTT
i caeSp111.Scaffold626  I 6 C 0
s caeJap4.Scaffold17990   261268 16 -   357190 GTGGGGGCgttgtttc
i caeJap4.Scaffold17990 C 0 I 58
e caePb3.Scfld02_0       4017593 144 +  4147112 I

a score=-1481.000000
s ce10.chrX              5761972 49 + 17718866 AGCGACAGATATT----TTAGGCGT-AGGTTCTGG---TAAAAGTA---CTACTGAAGGT
s cb4.chrX              11091601 50 + 21540570 ----GCCGATATGGAAATTGGGAAT-AGGTGCAGAAACTGGAAGTT-----GGAGGGGAA
i cb4.chrX              I 3 C 0
s caeSp111.Scaffold626    862701 52 +  1189296 AACATCTGATATT----TTCGGAATGAAGTTCAG----TGGTAGTCCAGCGATGTGAGAC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4017593 144 +  4147112 I
e caeJap4.Scaffold17990   261284 58 -   357190 I
e caeRem4.Crem_Contig0   2459511 126 -  4500979 I

a score=-1092.000000
s ce10.chrX              5762021 24 + 17718866 GCTGATG----TCGAAGCAGTTTGTGCT-
s cb4.chrX              11091651 23 + 21540570 GTTGATG----TGGTTGCAG-TTGTGGC-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    862753 27 +  1189296 GTTGATGGTGCCGGTGGTAA-TGGTAAA-
i caeSp111.Scaffold626  C 0 I 75
s caeJap4.Scaffold17990   261342 24 -   357190 GCTGTTT----CCGAGGAAG-CTGAAGCT
i caeJap4.Scaffold17990 I 58 C 0
e caePb3.Scfld02_0       4017593 144 +  4147112 I
e caeRem4.Crem_Contig0   2459511 126 -  4500979 I

a score=-1898.000000
s ce10.chrX              5762045 33 + 17718866 ---GTCGA--------CTGATCTTCGCCTTGGTTCGTAGTAAGA
s cb4.chrX              11091674 19 + 21540570 ---GGCAA--------TTGGACTGggtttt--------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   261366 32 -   357190 GAAGACAAATCCTTCTCTGAGCCAGTCTTTGG------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4017593 144 +  4147112 I
e caeSp111.Scaffold626    862780 75 +  1189296 I
e caeRem4.Crem_Contig0   2459511 126 -  4500979 I

a score=-5410.000000
s ce10.chrX              5762078 32 + 17718866 CTATCACTT-----GAAACAGGGCCAATAGAATCTTC
s cb4.chrX              11091693 17 + 21540570 cttgaattt---------caattttt-----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4017737 32 +  4147112 CTGTAACTTGTTGAGGAACAGGGATTGTAGAA-----
i caePb3.Scfld02_0      I 144 C 0
s caeJap4.Scaffold17990   261398 28 -   357190 -TTCCGCCTGTGAGCACGACGGACTTGTA--------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    862780 75 +  1189296 I
e caeRem4.Crem_Contig0   2459511 126 -  4500979 I

a score=1187.000000
s ce10.chrX              5762110 4 + 17718866 TGGT
s cb4.chrX              11091710 4 + 21540570 tggg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2459637 4 -  4500979 TGGA
i caeRem4.Crem_Contig0  I 126 C 0
s caePb3.Scfld02_0       4017769 3 +  4147112 -GGT
i caePb3.Scfld02_0      C 0 I 24
s caeJap4.Scaffold17990   261426 4 -   357190 TGAC
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    862780 75 +  1189296 I

a score=748.000000
s ce10.chrX              5762114 6 + 17718866 GTTGGT-
s cb4.chrX              11091714 6 + 21540570 gcTGAG-
i cb4.chrX              C 0 I 237
s caeRem4.Crem_Contig0   2459641 6 -  4500979 GTTGGT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    862855 6 +  1189296 GTTGAT-
i caeSp111.Scaffold626  I 75 C 0
s caePb3.Scfld02_0       4017796 6 +  4147112 GTTGAA-
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold17990   261430 4 -   357190 ---GGAC
i caeJap4.Scaffold17990 C 0 C 0

a score=-44171.000000
s ce10.chrX              5762120 180 + 17718866 -TTCTTATTTTCTT----CTTTGACTAATTCCGTGTTAA---------CATTAC--TTTCAATA--------TGGGGCACAGACTCTTCT-------------GTCGTTTT----TGCCTTTTTAGTCGCAACTGATGACTTCTTAT------------CTTCGTCTGTCC----GTTTTGTAAGTTTTTT-----------------------------GGCTGATGG----TGGTTTCGCCGTTGCTGATTTAGACTTAGTTGGCGTC-----
s caeRem4.Crem_Contig0   2459647 147 -  4500979 --TCTCTTGAGATT----TTTGGA------------------------GACTTC----TTCTTA--------ATTGgcgtcaaacttttt-----------------tctcgaattgaCTCCGTTGATTTTGAAGATGTAATG-AA-----------------------------GTTCATTAGTGTTTCTT-GAAGATCA-------------------GACG--TTC----CACTT-----GCTACAAGTTCTATTTTGGGCGTC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    862861 177 +  1189296 --TCTCTAGAGAGT----TTTTGTT--GTACCGTACCAAGATGAGTTGGGGTTC--CATTTTTA--------TACGGCGTTGATTCTCTT-------------GATGCTTT----TGCCGTCTTCTTGTTGTaggttttcttc---------------------------------tcttttggaGTTTTT----AAAGCA-------------------GGCGGCTTCATCATAGTTtcatcatt--tgattctgatttGATTGTTGCC-----
i caeSp111.Scaffold626  C 0 I 84
s caePb3.Scfld02_0       4017802 171 +  4147112 --TCTCGTGACAGT----TTTGGT------------------------GACTTC--TTTTTGTA--------TTC-ACGTGGCTTTTTCT-----------------CCTC----TGGCGTTTTTGTGACGGGTGTTGACTTCCGA-----------------------------GTTTCATTGTGTTTCT----CAATCACCTCTGTTTTCACTTCTGGAGCAGCTTC----TAGTTTTGGAGTTACAGCTTCTATTGTTGTTATAGTC-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   261434 234 -   357190 TTCCTCTTGAAGTTCCACTTTGATCTGATG------------------AACTTCAATATTGGTAGCAGCAGGCTTGACAATAACTTTTTCCACTTCAATAACTGGTGGCTCAATTTTCCCATTTTGAACAGGAGGAGCttttttcgcagattttgtgtactttctcttttccctaggctcgtcgcgttttttcgaaggttt-------------------tggagtttt----ttgcaTCGTCGTCACACAGCTTGTCGAAGCAACAGAAACTTC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11091720 237 + 21540570 I

a score=-2788.000000
s ce10.chrX              5762300 37 + 17718866 TCGCACTTCTCGATTTCTACATTTTCCACTGAAACCT
s caeRem4.Crem_Contig0   2459794 15 -  4500979 --------------------AGTTCC--CTTAAGTTT
i caeRem4.Crem_Contig0  C 0 I 16
s caePb3.Scfld02_0       4017973 19 +  4147112 ------------------ACAGTTTCAGCTGGAATTG
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990   261668 32 -   357190 TCGAACTTCACtggtttcgtgtttttcgcTAG-----
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11091720 237 + 21540570 I
e caeSp111.Scaffold626    863038 84 +  1189296 I

a score=-7582.000000
s ce10.chrX              5762337 53 + 17718866 CTTCCTGTTTCTCGGGTACCGGAGTCCTTGGCTTTTCAGACGCA---------ATATCT-------GGT
s cb4.chrX              11091957 53 + 21540570 ---------TTTCCGATGGCTCGGGTATggggatttttaaaatctctgaattcaGATCC-------AGT
i cb4.chrX              I 237 C 0
s caeRem4.Crem_Contig0   2459825 50 -  4500979 ---------TTTCTGGCATTggaattttgaggtttttcaaaata---gtatTTCCATCA-------AGT
i caeRem4.Crem_Contig0  I 16 C 0
s caePb3.Scfld02_0       4017998 41 +  4147112 ------------CTAcatgttctattttttgttgttccaCCGTC---------TCATCt-------ggt
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17990   261700 60 -   357190 CTTCTTGAGATTCTGACTTTGATGTCGAAGGTTTGTCAACTTCA---------ATATCCTCAAAAAAGT
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    863038 84 +  1189296 I

a score=109532.000000
s ce10.chrX              5762390 290 + 17718866 -----TCCTCAATTTTAACTTCTTTCGTCGACACTCCT---TCA---CTTAATTCCCGTGTTGCCGAC---TTCAATAGAGACCGTTCTTTTCGCTTTCTGAAGATTGAAATAGTT--AGATAAA-AAAGA-----ATTCGATAAA----ATCTTAATTTGTAATTTGACCTACAATGATTTTTCTTTCTCCACTTGTTTTTGTACCATTGTTGTGATTGTTTTCTGCATTTCGACAACATTATCATTGCAGGTTGAACGTCGAGTAGAGGTTCCTTTTCTGAAATAT-----AAT------------------TTGAAATGCAT--------ATTATTCATAAA------------------------------------------------------------------------------------------AT
s cb4.chrX              11092010 269 + 21540570 -----TCTTCCGTTTTTATTTCAGCGGATGTCGATACT---TCG---CTTGTCTCGCGTGGTACAGAAGATTTCAACATTGATCGCTCTTTTCGCTTTCTGAAGAT-G-AATAGTT--AGATA---GTGAATCTTGA---GATGAA----ATC--------------AACCCACAatgatttttccttttccactTGTTTTTGTACCATATCGGTGATCGACTTTTGCATTTCAACGACATTATCATCGGCGCGTGACCGTCGTGTAGAAGTTccttttctgcaaaat-----tca-------------------------tTGC---------TCATTTACAAA------------------------------------------------------------------------------------------CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2459875 281 -  4500979 -----TCTTCAAGTTTCACTTCTGTTGTTGTCACTTCC---TCA---CTTGTTTCTCGTGTTGCTGACGTTTTCAACATTGATCGTTCCTTTCGCTTTCTAAAGATAG-AATAGTT--AGATATTCGGGAA-----A---GATTGC----ATCT-------TTGTTTAACCTACaatgatttctctttttccacttGTTTTTGTACCATGTCGGTAATACTTTTCTGCATTTCCACAACATTATCGTTACAGCGGGATCTGCGTGTGGAAGttccttttctgaaaaat-----agg-------------------gaaagtTTAC---------TTTCTGACCAA------------------------------------------------------------------------------------------TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    863122 287 +  1189296 -----CCCTCTGTTTTGATGTCTGCTAACGGTTCCACA---CTA---------TCTCTTGGCACTGAC---TTCACCACAGACCGTTCCTTTCGTTTCCTGCAGATTG-AATAGTT--AGATAAA-ATTAA-----A---GATAGA----ATCT-------TGATGTAACCTACAATGATTTCTCCTTCTCGACTTGCTTTTGAACCATGTCTGTGATGCTTTTCTGCATTTCGACAACGTTATCATTGCACCTTGATCGTCGAGTGGATGTcccttttctgaaaaaa-----aaacatcgTTTCATAACATTTTCGAAGTTCGT------------TCGCCGAA------------------------------------------------------------------------------------------TC
i caeSp111.Scaffold626  I 84 C 0
s caePb3.Scfld02_0       4018039 398 +  4147112 -----ttctcagttttcacttCCGCTGACGTTTCTCCC---TCA---------TCTCGTGTCACTGAC---TTAATCATGGATCGTTCCTTTCGTTTTCTAAAGATTG-AATAGTT--Agattag-agaaa-----a---aactgatgcGATCT-------GTGTTTAACCTAcaatgatttttctttttccatttgtttttgtaCCATGTCAGTGATAGATTTTTGCATTTCCACAACATTATCGTTACATCGAGACCGTCGTGTAGATGTgccttttctggaaaagttcaCAGGTTTTGTTAGCtgactttttgatagtttattgcatttttttattgccaaactcttttttgtccagaaaatagtttttttgggaaatacgcttttcaatcattttagTAGTATTTTAAAATGGGTTTTCGGATTCAGGTTCTC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   261760 293 -   357190 TCACAGGTTCTTGTTTCACTTCAACAGTCTCCTGTGCCGAGTCAGTGCTTCTTTCGCGTGTCAACGAC---TTCAACAAAGATCGCTCTCTTCGTTTCCTG------G-AACTGTTTCAGATAAAATCTAA-----A---TGTGAT----GTTTGGAACAAGCAAACAACCTACATTGATTTCTCCTTTTCAACCTGTTTTTGAACCATGTCAGTGATGGTTTTTTGCATCTCCACGACATTATCGTTTACGCGAGACCGTCGGGTAGAGGTtccttttctgaaaaac-----aaa-----------------atgctgttttgt---------tttttataaaa------------------------------------------------------------------------------------------T-
i caeJap4.Scaffold17990 C 0 I 19567

a score=8034.000000
s ce10.chrX              5762680 287 + 17718866 TTATAA---------------TGCACGTATA---------------TCTGTCTGCACTCTCTT--------------T-----------CC-------------------------------------------TAATAATATTTGCTCAGATAACTGTGTTGCG------GTTCCCCCTGCAGA-----------GAATGAAA------TGTGGGTGATGGTCAAGCTTACGCGAGACT---ATA---GTTTACACAGCTCCTAACGAGGAAG---TCAGAAACTAAGGGTTAGGTCACACTATTAG----------TCCTCATGCATAAAACATG-GTTCAGAACTGAATATCAGTCACACAAATACACGTATGGGAGAAAAAGGCACAGACCA-----AAATGAGCGCACTCGCATGATAGATGAAATAT
s cb4.chrX              11092279 311 + 21540570 ATATTG---------------ATTTATTATG---------------AACGCCCACACTTTGCTATACCA-CTCCTATT-----------TC-------------------------------------------CTATATTATTTGCTCAATCACCTTGGTTGCTTTATTCTATTTCTCTACCTTTGCACACTCACAGACACACATAGTATATAGT----GGTCAAGCT-----AAAGGA---ACattgattt----------ta--aaagaaaacacTGGGTCTTGGATTTTGGGT--CACTGGTCTGGTTTC----CTTCCATGCATAAAACATG-AAGCGGAACTAAATATCAATCACACATCTACA--TAGTCGTCATATatatagaaaataa----aaataagtgGTCTCGCATGACAGATGAAAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2460156 310 -  4500979 ACAC-----------------GTTTTTTCTG---------------TCCATCTCGAGTTTATTCTCATA-GTACGAGTTGCACACACGCTC-------------------------------------------TCTCATTATTTGCTCAGTCACCTCTGTTGCT--------TTTCTCTGCATT-----------ATACACAC------TATAGTGA-GGGTCAAGCTACCAAAAGCGA---ACA---GTTT----------GAACAAGGAAACCAGACGGATATCGAGGTTGGGT--CATTATTcgtttttcatagttttcatgCATAAAACATG-AAGCGGAAATGAATATCAATCACACACCTACA--TGCACACAGACGAAACATAAAATAACATCAAATAAGCGGTCTCGCATGGcagatgaaaaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    863409 267 +  1189296 ATATCATCGA-----------GAtagtttca---------------ttcaattcaac------aTTATATATGCGAGC-----------TC---------------------------------------AGCTTTCCGTTATTTGTTCAGTCACCTCTGTGGGA--GGCAG--------TCAGT-----------AAGCAAAC------TACAGTTG-TGAATAAGCTTCTATGACATAGCTATA---GTTC------CGATTA--GTATGAA----------------CTCAGGT--CGCTATTAG----------TTTCCATGCATAAAACATGAAAGCGGAACTGAATATCAATCAGACACCT----------ACAAACGAAACgtggaata-----aaaaaag--gtCTTGCATGACGAATGAAATAT
i caeSp111.Scaffold626  C 0 I 112
s caePb3.Scfld02_0       4018437 342 +  4147112 AGATCATTGGATTACATTCCTGATAGTTTCAAGTACAAACAAAAACCCCAATTCAACTAGTTTCTGCTATATCCAAGT-----------TCGCtattctcagttttccaatATAATGAATGCAAAAGAATGGCTTCCTATTATTTGTTCAGTCACCC-----AAA--AGCGGATTCCCCTTCAGT-----------TTACACAA------TACAGTCGATGGTCAAGCTCCGACAATAGG---ATA---GTCC----------TA--GTAGAAA--------------ATCCCGAGT--TGCCATTAG----------TTTCTATGCATAAAACATG-AAGCGCGAATGAATATCAATCACACACCTACG--TTGGCACAAATGAGACACAAAATA-----GACTGCG----CTCGCATGAcagatgaaaaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   262053 19567 -   357190 I

a score=-14080.000000
s ce10.chrX              5762967  95 + 17718866 -TTTT----CAGAGTTGCCTCGAATC----------------AATCGTAGGC------------GATGGAAAT-----------CATTGGGGCACTCG-------TTATAGTTT-GACAGCT----GATAAACTTT-TTATGCTATTTCAGG
s cb4.chrX              11092590  95 + 21540570 gtt-------------------------------gcagaaa-aaaagttgatgcTATA------ATTGGAAAT-----------ATCTAGACGAGTTA--TGggacaaaaataa-aacaagt----GAAAATTTGT-CGATGTcgttttgag
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   2460466 131 -  4500979 gtttt---------ttgccTGGAA-------GTAATAGAGACAACAGAAGACGCAATAAGCGACATCAGaaat--aacctaaaaaactagataatcta---aaaatataaataacaacaggtgaaagaaaatTTGTGTGATGTTGTTGGAAG
i caeRem4.Crem_Contig0  C 0 I 4
s caePb3.Scfld02_0       4018779 132 +  4147112 gttctgCTTGGAAACTGCCTGGAAACTGCTGGTAGCAAAGC-GAAAATGGGC-CTACAAACTA-gtttgaaatagaaatgacGAAAATAGATGATATGActaaaatagaaaaca-agcAGCT----GAAACT-----AGTTCTAG-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   262053 19567 -   357190 I
e caeSp111.Scaffold626    863676 112 +  1189296 I

a score=-2221.000000
s ce10.chrX              5763062 12 + 17718866 ---------CTTGTA--CTTTTT-----
s caeRem4.Crem_Contig0   2460601 21 -  4500979 ctttccaaaaaagta--cATTTC-----
i caeRem4.Crem_Contig0  I 4 C 0
s caePb3.Scfld02_0       4018911 26 +  4147112 --ATCAGAATGGGTAATCTGTTCTTGAA
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17990   262053 19567 -   357190 I
e cb4.chrX              11092685 52 + 21540570 I
e caeSp111.Scaffold626    863676 112 +  1189296 I

a score=-6848.000000
s ce10.chrX              5763074 59 + 17718866 TTTCATAATTTTTGGTTGGCAAATGACGTATTCTTGTTTCAGTTATT-CTATTAAAAC--------------AA
s caeRem4.Crem_Contig0   2460622 64 -  4500979 -GTCACACTAT---ATtggaaaa------atcacattttcagttgtgttattttgaatcatttttctgatccta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    863788 47 +  1189296 ttctgaacttt-----------------------aGTACAAATTTTg-taattaaaat---ttcttagatgaaa
i caeSp111.Scaffold626  I 112 C 0
s caePb3.Scfld02_0       4018940 52 +  4147112 CATTGAAGTCTTGGGTTGGGAAA------ACCA-AATATGAATCTTT-Cacatcgaat--------------aa
i caePb3.Scfld02_0      I 3 C 0
e caeJap4.Scaffold17990   262053 19567 -   357190 I
e cb4.chrX              11092685 52 + 21540570 I

a score=-4269.000000
s ce10.chrX              5763133 28 + 17718866 AAAAATGCAAAAAAATCAAAC----------ATTCGTT
s cb4.chrX              11092737 27 + 21540570 -GAACgtgtgaaaaacaaaat----------atcaCTC
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   2460686 28 -  4500979 aagatttttcaacaacaaaaa----------atagcTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    863835 13 +  1189296 -----------aaaacggtAT--------------CTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4018992 27 +  4147112 -----------aaaattgtatgaACTCTCTCAAGACTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   262053 19567 -   357190 I

a score=144386.000000
s ce10.chrX              5763161 168 + 17718866 ACCTAGTTCCGCAAACAAAACAGCGATAAGCTGCTGCACGATTCATAAATGTGCACGAATGACAGGCCCATTTGTTAATATCGTCGTTATCCATTCCATCATCTCCATCGTCTGCATCAAAATCCTCTTCGCTATTTTTCCTCTTCAGTCGTTTTCGGCCCGACATTT
s cb4.chrX              11092764 168 + 21540570 ACCTCGTTCCACAAACAGCACAGCGAAACGCGGCGGCTCGATTCACAAATGTGCATGATTGACAGGCCCATCTATTAATTTCGTCGATATCCAGCCCGTCATCTCCTTCGTCAACATCAAAATCCTCTTCactgtttttcctttttgtccTCTTCCGACCTGACATTt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2460714 168 -  4500979 GCCTCGTTCCACAAACCACACAGCGGAACGCCGCTGCTCGATTTACGAATGTGCACGAATGACAGGCCCATCTATTAACTTCGTCTATATCAAGTCCATCATCTCCTTCGTCAACATCGAAATcttcttcactatttttcctttttgtccTCTTCCGACTTGACATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    863848 168 +  1189296 ACCTCGTTCCACAAACAAAACATCGAAAAGCCGCGGCACGATTCACAAATGTGCAAGAATGACAGGCCCATTTATTAATCTCGTCTATATCAAGACCGTCGTCGGCCTCGTCAAGATCAAAATCCTCGTCActatttttccgtttcgtCCGCTTCCGACCTGACATTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4019019 168 +  4147112 ACCTTGTTCCACAAACGTTACACCGAAACGCTGCAGCTCGGTTTACAAATGTACAAGAATGACACGCCCATGTATTGATATCATCCAACTCGAACCCATCATCACCCTCATCAACGTCGAAATCCTCATCactatttttccgttttgtcCTCTTCCGACCTGACATTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    80681 165 +   357190 ACCTTGTTCCGCAAACCAGACATTTATAAGCAGCTGCTCGATTCATAAAAGTGCACGAGTGACAAGACCACTTGTTAACATCGTTGCTGTCCA---TGTCATCGTCATCGTCCAAATCAAAATCGTCCTCACTATTCTTCCGTTTCGTCCGTTTTCTgcccgacattt
i caeJap4.Scaffold17990 n 19567 I 1781

a score=84919.000000
s ce10.chrX              5763329 422 + 17718866  
s cb4.chrX              11092932 558 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2460882 569 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    864016 572 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4019187 559 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    80846 1781 +   357190 I

a score=119947.000000
s ce10.chrX              5763751 460 + 17718866  
s cb4.chrX              11093490 524 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2461451 442 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    864588 501 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4019746 468 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    82627 550 +   357190  
i caeJap4.Scaffold17990 I 1781 I 219

a score=30135.000000
s ce10.chrX              5764211 43 + 17718866 GACTTGGGACCATTGATCGTAGATATGTTGCGAA-CTGACGCCA
s cb4.chrX              11094014 43 + 21540570 TACTCGGGACCATTGACCGTAGATTTGTTGCGAA-TGGACGTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2461893 43 -  4500979 TACTCGGGACCATTGATCGTAGATTTGTTGCAAA-CTGCTGTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    865089 44 +  1189296 TACTCGGGACCATTGATCGCAGATTTGTTGCGAATCCGCAGTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4020214 43 +  4147112 TACTCGGGACCATTGATCGTAGATTTGTTGCGAA-CTGCCGTCG
i caePb3.Scfld02_0      C 0 I 224
e caeJap4.Scaffold17990    83177 219 +   357190 I

a score=-16169.000000
s ce10.chrX              5764254  65 + 17718866 ACTGATGTGT---------------CAGAAAAA------------AGTAAAAAGA-GTAAATTCTCTT----------GACTATAATAACATG-----------ATACAAAATA----------------------
s cb4.chrX              11094057  60 + 21540570 -------------------------CAAACAAA-----TCTGcctttt--------ttgg------------------gagaaaaagaATAGG-----------CAACaaaaaaaCG---------ATACTGAATA
i cb4.chrX              C 0 I 670
s caeRem4.Crem_Contig0   2461936  81 -  4500979 -------------------------CAAACAAAACCTTCCCGCCACTGCCACACA-TTGG------------------TGCTTTGAGTATATG-----------TAGCAGGAATACGGAGAAGAGAATACTGAATT
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold626    865133 117 +  1189296 -ACACCGCACATTGGTGcactgaaacagaaaaagag--tcaGAATATTAGATATATTTGGATTCTCTCAGATCCAGCCGAGTTTGATTATGTGGGGGAGTAGCTTaaaggaaaaaca---------att-------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4020257 224 +  4147112 I
e caeJap4.Scaffold17990    83177 219 +   357190 I

a score=-5971.000000
s ce10.chrX              5764319 106 + 17718866 --------------------------------------------TAAAATATATTTGCCTCATTACAAATTATTAGACCAAAT-GAGAATACAACATGTGACCGATCACAGTTTAGCA-----TATTCATTACG--------------------------CCCAGAATTAAGAGAAC---------------CTCGT------
s caeRem4.Crem_Contig0   2462038 148 -  4500979 TAGATACACATTTTTACGTGGTTCTAACGAAAAACATGGGATGTTATAAGGTTTTCGGTTCCTTGTGAG--acgaaac---acaaaaaatgtgaaacgtGA------GCCGTTCAACAACACGTATTAGCTGAG-----------------------TGACTCAGAAACAAA--------------------CTAGTTCTCT-
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold626    865250 150 +  1189296 --------------------------------------------tttaaggTCTTTGGTTATTTGCGCA--ATGGAACGAagcagaaaat-tgaaacgtGA------GCTGTTCAATAACAAGTATGCACGTAGAGTTCAATGTGCGATAAAACCTATGTgtcagaaatggaaaatatgaagatATGTTGTGtttaatctctt
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4020257 224 +  4147112 I
e caeJap4.Scaffold17990    83177 219 +   357190 I
e cb4.chrX              11094117 670 + 21540570 I

a score=-1013.000000
s ce10.chrX              5764425  8 + 17718866 ---AGATGTCT
s caeRem4.Crem_Contig0   2462186 11 -  4500979 GGACGTGATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    865400  6 +  1189296 -----ttttgt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4020481  8 +  4147112 ---AGATGTCT
i caePb3.Scfld02_0      I 224 C 0
e caeJap4.Scaffold17990    83177 219 +   357190 I
e cb4.chrX              11094117 670 + 21540570 I

a score=-59579.000000
s ce10.chrX              5764433 309 + 17718866  
s caeRem4.Crem_Contig0   2462197 367 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    865406 401 +  1189296  
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       4020489 512 +  4147112  
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990    83396 223 +   357190  
i caeJap4.Scaffold17990 I 219 C 0
e cb4.chrX              11094117 670 + 21540570 I

a score=14508.000000
s ce10.chrX              5764742 205 + 17718866 AAGTTTTGAAGA--------------------------AGAAACAGAGATTAAAAGAA---------GGCAACGAAACTAGTGATTACAATTAT-AAATGAATGGG----TGGGTGGATGGGGAAA-GAATG----AGGCA-----------------GCGTTCGTACGGAG-CGTTCGCACA------------GAGA--------GGATTGAGTGGAGGGTGGAGAGTATG---CAAAAGAAGTAGACGAGACGTAGAGACGCAGAGAAAA-ATAGGGGCGAAGGGAATC
s cb4.chrX              11094787 201 + 21540570 AAGAACTGAGGAAAAAAcg-------------------taggaaaaaaagaaagaggatTGGCA---ATGAGGGAAACTTGTGATTACAATTATAAAATGGATGAA----TGGGG-------CAAA-GACTGAGAGGGAGA-----------------GCGTTCGTTCGGGG-TGTTCGGCTG------------GGgagagaagacgaa---a---gtgagtggcgg--------gcaagagaaaata--------agagaaaacgaaaaaa-----gaggaagaggagta
i cb4.chrX              I 670 I 975
s caeRem4.Crem_Contig0   2462572 176 -  4500979 aagttgtGGTAGAAAGACATT----------------CtaagaagaacaaaaagaggA-TGGC-------AGGAAAACTAGTGATTACAATTAT-AAATGGATGGA----TGGTG---------AA-GAATG---GGGAGA-----------------GCGTTCGTTCGGAG-TGTTCGATTG------------Ggg---------gaa---a---gtgag----------------aaaagagaaga--------agagacatcgagggag-----agagaaaaaggatc
i caeRem4.Crem_Contig0  I 8 I 22
s caeSp111.Scaffold626    865812 208 +  1189296 AAGTTGTGCGATCTTTACATT-----------------CGAAACgtagaaaatgagaa---------aagagaagaactaGTGATTACAATTATAAAATGGATGGG----TAGAA---------AAGGAATG--AGAGAGA-----------------GCGTTCGTTCGGCG-CGTTCGGAATG--ACTGGGAGagacagaaagaaagaatcga---GTGGGTGAACA--------catagagagaaaat-------agagacgttaagaaga-acaagaagaagaag----
i caeSp111.Scaffold626  I 5 I 5
s caePb3.Scfld02_0       4021007 206 +  4147112 AAGTTGTAAGATCTAGa-agt-----------------ggaaatgaagaaaagaagga-tggCAAGTAGGAGAA-AACTAGTGATTACAATTAT-AAATGGATGAG----TAGTG---------AA-GAATG--ACGGAGA-----------------GCGTTCGTTCGGGG-CGTTCGCAgt------------aagagagagaaagaatcgAGTGGTGGGTGAACA--------CATAGAGAGAATAC-------AGAGGGGCAAAGAAAATTCGTggagaaaacc----
i caePb3.Scfld02_0      I 6 I 5
s caeJap4.Scaffold17990    83619 257 +   357190 AAATCAGAGGCAAGAGTCAGTGAGTGAGTGAGGGCGTGTAGGAGAAGGAAAAGGATGA---------GACAGGAAAACTAGTGATTACAATAAT-AAATGAATGGGGGTAtagtg---------aa-gaagaagaagaagaagaagaccgATGGTGGGGCGTTTGTTCGCAGCCGTTCGCGGGGGTACGGGGATAAAGAGCGATAGAGAGAAGA---GGCGGTGAAGAGAGTGAGACGTAGGAAAGAAA--------AGAACGAACGAACGTACGAacggatggatgg----
i caeJap4.Scaffold17990 C 0 C 0

a score=5660.000000
s ce10.chrX              5764947 76 + 17718866 -----------AAGAAGGATACAGGACGAAATGAAGGA----GGAGATGACGACGAACAAG--ACGGCAAATGA--GGATCATAAAG----TATTCATT
s caeRem4.Crem_Contig0   2462770 66 -  4500979 -----------AATAGAGATA--------AATGAAGGAATCGTG----------GAGAAAT--TCGAAATATAA--ACGAAATACAGAATATACACATT
i caeRem4.Crem_Contig0  I 22 C 0
s caeSp111.Scaffold626    866025 55 +  1189296 -----------aaagaagata-----------gaagga----tg----------ggagaag--aCAGCAAATGA--GGATAATAAAG----TAttcatt
i caeSp111.Scaffold626  I 5 I 460
s caePb3.Scfld02_0       4021218 56 +  4147112 -----------aaccAAGAT------------GAAGGA----TG----------GGAAAAGACACAGCAAATGA--GGATAATAAAG----TATTCATT
i caePb3.Scfld02_0      I 5 I 1
s caeJap4.Scaffold17990    83876 79 +   357190 atggatagATGGATGAAGAGAAATGTACAAGGAGAGGG----TG----------GCAGAGA--ACGAGAAGGAACGAAATAACAAAG----TACTAATT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11094988 975 + 21540570 I

a score=-1241.000000
s ce10.chrX              5765023 10 + 17718866 GCGTGGATGA---
s caeRem4.Crem_Contig0   2462836  7 -  4500979 ---CAGTAAA---
i caeRem4.Crem_Contig0  C 0 I 479
s caePb3.Scfld02_0       4021275 10 +  4147112 GTttgaaaaa---
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990    83955 10 +   357190 ---TAATAAATAG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11094988 975 + 21540570 I
e caeSp111.Scaffold626    866080 460 +  1189296 I

a score=-273.000000
s ce10.chrX              5765033 13 + 17718866 CGGGGGAAAAATT---
s caePb3.Scfld02_0       4021285 13 +  4147112 ccgagaaaatgtt---
i caePb3.Scfld02_0      C 0 I 1363
s caeJap4.Scaffold17990    83965 13 +   357190 ---AGAAAGCAATATG
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11094988 975 + 21540570 I
e caeSp111.Scaffold626    866080 460 +  1189296 I
e caeRem4.Crem_Contig0   2462843 479 -  4500979 I

a score=236.000000
s ce10.chrX              5765046 32 + 17718866 GGGACAAATCGAATTATTTCACTTTTAAATGG
s caeJap4.Scaffold17990    83978 17 +   357190 G---------------TTTCGTTTCTAAATAG
i caeJap4.Scaffold17990 C 0 I 3370
e caePb3.Scfld02_0       4021298 1363 +  4147112 I
e cb4.chrX              11094988 975 + 21540570 I
e caeSp111.Scaffold626    866080 460 +  1189296 I
e caeRem4.Crem_Contig0   2462843 479 -  4500979 I

a score=0.000000
s ce10.chrX              5765078 815 + 17718866  
e caePb3.Scfld02_0       4021298 1363 +  4147112 I
e caeJap4.Scaffold17990    83995 3370 +   357190 I
e cb4.chrX              11094988 975 + 21540570 I
e caeSp111.Scaffold626    866080 460 +  1189296 I
e caeRem4.Crem_Contig0   2462843 479 -  4500979 I

a score=8.000000
s ce10.chrX              5765893 20 + 17718866 GTATTTTTCTGAACGGCAAA
s caeSp111.Scaffold626    866540 20 +  1189296 GTAACCTTAAGAACACCTTC
i caeSp111.Scaffold626  I 460 C 0
e caePb3.Scfld02_0       4021298 1363 +  4147112 I
e caeJap4.Scaffold17990    83995 3370 +   357190 I
e cb4.chrX              11094988 975 + 21540570 I
e caeRem4.Crem_Contig0   2462843 479 -  4500979 I

a score=-3999.000000
s ce10.chrX              5765913 363 + 17718866  
s caeRem4.Crem_Contig0   2463322 451 -  4500979  
i caeRem4.Crem_Contig0  I 479 I 8
s caeSp111.Scaffold626    866560 427 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4022661 457 +  4147112  
i caePb3.Scfld02_0      I 1363 C 0
e caeJap4.Scaffold17990    83995 3370 +   357190 I
e cb4.chrX              11094988 975 + 21540570 I

a score=5566.000000
s ce10.chrX              5766276 157 + 17718866 ---------AGAATGAAAATCTGAAGATCTGGTTTCA--------TTGGGAGAAGAATACG----AAGA------------ACGCTGAGAGTGGGTGTATTGGTTCCGTTTATACTAACATTGGAGAATGAAGATGCACAAGTA----CGGACAACATCTCCAAAAAAAAAGAAAATCATCTTT-----GATGACACAC
s cb4.chrX              11095963 152 + 21540570 AGAATAGAAA---------ATTAGAGATCTGATttcaagaattaaaaaaagacaaaggatgagtcaaga------------a----aaaaaagagaattggAAATAAATAGTCTATAAAAAGCAAAA---CAGATGAACAAATC----TGGGGAGCATTTC----GGGGATGAAGATCAT---------GAGAAAAC--
i cb4.chrX              I 975 C 0
s caeRem4.Crem_Contig0   2463781 167 -  4500979 tgaatagaaataaagaaagGTTCGAGATCTCATTTCAAAAGT---GGAAAGTGAAAGAACG----AAGA------------A----ACTGGTGGGTGTATTGATTCAGTTATtactagaaaaaagaa---gaagtagacAAAATATAACGGCAAAGAGCTC------AAAAGGAAATCATCTTCAATGACAGAAAACGG
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    866987 162 +  1189296 -----agaaaatatgaaaaactagagatctgatttcaaaagt---gatgaaaaaaaatgcg----gagaaggaaaaaagaga----gagagaagaaatctTGGTTTAGTTATAACTAGAACGGGAGA----AGATGCACACATA---------GACTGCTC------ATACGGAAATCATCATCAAT--GACAAAACGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023118 119 +  4147112 -----gaaaatgagaaaaggcTAGAGATCTGATTTCAAATGT---GAAGAATGAAAGAACG----AAGA------------A----AAGAGTGGGAGTACTGGTTTAGTTATTACTAGAACGGA-----------------------------------------------GGAAATCATCATCAAT--GAGAAGA---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    83995 3370 +   357190 I

a score=98572.000000
s ce10.chrX              5766433 107 + 17718866 GGAG-CTTAAGAGATCAGAAACGATTGTCGGGCAGCTTGACTGCGTTGGCGGAGAGAACTTCTTCGCTGAACTGGGTTCCTCGAGCACGGCCATTCAGTGCTTCTGGA
s cb4.chrX              11096115 105 + 21540570 ---GTTTTCGGGGATCAGAAGCGATTGTCGGGAAGCTTAACCGGGTTGGCGGAGAGCACTTCCTCGCTGAATTGTGTACCACGACCACGAGCATTCAGAGCATCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2463948 108 -  4500979 GGAGTTTTAGGAGATCAAAAACGATTGTCGGGCAGCTTAACTGCGTTGGCGGAGAGGACTTCTTCACTGAATTGCGTACCACGTCCACGACCATTCAGTGCATCTGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    867149 107 +  1189296 GGAG-TTTAGGAGATCAAAAGCGATTGTCGGGCAGCTTAACTGCGTTGGCGGAGAGGACTTCTTCACTGAATTGCGTACCACGGCCACGACCATTCAGAGcatctgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023237  98 +  4147112 ----------GAGATCAGAAACGATTGTCGGGGAGTTTGACTGCGTTGGCGGAGAGCACTTCCTCACTGAATTGTGTTCCACGTCCACGACCATTCAGGGCATCTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    87365 101 +   357190 -GGGCTTTAAGGGATCAAAAGCGATTGGCGGGCAGCTTAACTGCGTTTGCGGAGAGCTCTTCCTCGCTGAACTGCGTGC------CACGCCCGTTGAGCAGATCTGAA
i caeJap4.Scaffold17990 I 3370 I 366

a score=-1397.000000
s ce10.chrX              5766540 2 + 17718866 AT
s cb4.chrX              11096220 2 + 21540570 AT
i cb4.chrX              C 0 I 1156
s caeRem4.Crem_Contig0   2464056 2 -  4500979 AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    867256 1 +  1189296 a-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023335 1 +  4147112 A-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    87466 366 +   357190 I

a score=-12829.000000
s ce10.chrX              5766542 224 + 17718866 -----TCAAAATTATTTTCAATTGCAAAAGTTACT---------AATGAAGTGCTTGCTGGTCAGCTAGTGT--ACACTTCAAA-----TAG-CTCTGGCTCATCTAT--TTCATCCACGTTTT-----------ATTTC----------TCTTCCGTCCATCCATGCACAATAGGGAA--AAGTTGCCTC----TGTATTTGTATTTGCATTTCGCAATGAAACGGTCTGCGTGAGCGGTGTAAAAAGATAGACAAAGAGAGACGAACGTTTCT----
s caeRem4.Crem_Contig0   2464058 214 -  4500979 GAATTGCTCCTCTGTTTC----AGCAGATGTGGTTAGAGGTCTAAATGAGG-------TGGTCAACTAGGATCAACGTTTCAAC--GACCAA-TCTCATTCTATCTTTTAtctatttcctttttcgaaaaa----gtttt---gtgaattttttcgattgacaaagtcgcaacaaaaaa--acgtcaGCTT---------GTATATT---AA-----ATTTGAT----------GCATGTCGCggagaaaaattcagatat-------------tat--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    867257 184 +  1189296 -----tcaacttTGTCTA-------GGGTGTGTTGAGCTATTT-AATGAAG-------TGGTCAACTAGTGTGAACATTCTGAT-GCACCAC-TCTAGACTTA-------TCTGTTTCCGTTTTGCAAGAGTAAACTTTTAAagtaattgttttca--------------------gaa--tcgtcttttt------------tagtttaaa-----aatgaag----------gtcttttccaaaaactaatACAAAGGA-------------T----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023336 197 +  4147112 -----TCAACATTGTTTGTCCGAGCAGATGTGTTTGGCTATTT-AATGAAG-------TGGTCAGCTAGGATGAACATTTCCACAACACCACTTCGAAActcatttat--tttatttccgttt------------ctctt-------tttttttcg--------------------aaactttgcaATTTTCCCGTGGATGTATGTTTGAAt-----aaccaaa----------aattgtttggagAAGTAACAAAAGggg-------------tttct
i caePb3.Scfld02_0      C 0 I 12
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I

a score=-1399.000000
s ce10.chrX              5766766 28 + 17718866 TATGAATCTCGCAACACCTGCTGGGCAC
s caeRem4.Crem_Contig0   2464272 13 -  4500979 ttttaactcgaaa---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    867441 27 +  1189296 TATGAACATAACATTACATACTTAACA-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4023533 12 +  4147112 I
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I

a score=-12931.000000
s ce10.chrX              5766794 112 + 17718866 -------------ATTTTTGTATTGCAGAATTTTCATAATTACAATTTTTCAAATTCATGAATTACTTTTGAAACATTAGAAACATTGTTGAAATTATTGATTTTGTAATTAAAAAATGGTTG--AT
s caeRem4.Crem_Contig0   2464285  95 -  4500979 atcataaaatagcATGAAAAT------TAACGGTCACAATCACGACTTCAGTGATATGGTACTTCACTTTAAA-----AGGg------gtcaaat-------------attcaaaaatcgttGAG--
i caeRem4.Crem_Contig0  C 0 I 58
s caeSp111.Scaffold626    867468  58 +  1189296 ------------------------------------------------GTATGCCTtgtgaa--aatttcgaaatcataAAA------GTCAAAGgaac---------tttcagattttgcGA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023545  94 +  4147112 -------------atttttgt------tagttgt-gcaaacacaa-ttttttgatttgaaaaataattttgaaattctagaa------tttatacgaacaa--ttgaatttcagaagttggAG----
i caePb3.Scfld02_0      I 12 C 0
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I

a score=-2974.000000
s ce10.chrX              5766906 52 + 17718866 TCACTGTTTTTGAAAATGCTGTTAATTTATTACAAAATTGGAAAAAACCTAG--------------
s caeSp111.Scaffold626    867526 40 +  1189296 -----------GAAAA---------------GTCAAATTACATGTTTTTCGGTAACTTATActttc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023639 27 +  4147112 --------TTTGGAAA-----------------TAAAGTGGATGAGTCTCAg--------------
i caePb3.Scfld02_0      C 0 I 144
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I
e caeRem4.Crem_Contig0   2464380 58 -  4500979 I

a score=-294.000000
s ce10.chrX              5766958 19 + 17718866 ATTTCTTACTTGGGTAGCA
s caeSp111.Scaffold626    867566 12 +  1189296 atttccagact-------a
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4023666 144 +  4147112 I
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I
e caeRem4.Crem_Contig0   2464380 58 -  4500979 I

a score=904.000000
s ce10.chrX              5766977 11 + 17718866 TTTTC-------ACATTC
s caeRem4.Crem_Contig0   2464438 18 -  4500979 ttttcagactgactattc
i caeRem4.Crem_Contig0  I 58 C 0
s caeSp111.Scaffold626    867578 11 +  1189296 ttctt-------tcgtct
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023810 11 +  4147112 ttttc-------ttattt
i caePb3.Scfld02_0      I 144 C 0
e caeJap4.Scaffold17990    87466 366 +   357190 I
e cb4.chrX              11096222 1156 + 21540570 I

a score=-7544.000000
s ce10.chrX              5766988 126 + 17718866 T-CTTTTTATTTCTC-----ACAAAGTATCTCCCCATCAATCAACTCCCTCTAGTGACTTATGACCGTA--CCGGACT-----------CATTTCG-----TGTTGTTATGGTT--TTGTTT---------CTCGAAATCCTGTTTTTCAACACTGCCATT
s caeRem4.Crem_Contig0   2464456 143 -  4500979 ttctttttcttcttctactactctagttattccttcctc-ttACTTCGTTCGAGTAAGTTCTGACCCTCAGTCATACT-----------TATTTTTGGCGATGtgattgtgttt--ttttttcttattccccTCAAA----TACTTTACTTCCTTGAAATA
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    867589 114 +  1189296 ttcatcttttctctc-----gttcggtttctttttcttc---------tgctaGTAAGTTATGACTGTCTGTCacatt-----------cgttttcat---tttt-ttgcattg--tATTTT---------CTCGAA----CGTCTAACTACTCTGTT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023821 131 +  4147112 tccttttttcttctcatcttatttcgttcctcttcccta---------ttctAGTAAGTTATGACC-----CCACACTCCAGGCGCTCACGTTCTTAT---TTTGATTgtatttcccatttt---------ctcgaA----CGTCTAGTATCTCTAACACT
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990    87832  90 +   357190 -tcttcttatttttc---------aatttccccgttctc---------------cattttttgatcgtg--tcgc--------------tgttgtg-----ttctcttttttct--tttttt---------tgcaaa----caatttttgt----------
i caeJap4.Scaffold17990 I 366 C 0
e cb4.chrX              11096222 1156 + 21540570 I

a score=128894.000000
s ce10.chrX              5767114 193 + 17718866 --CATA-CACCTTCTGCAGATGT-TTTTA----CTACCCAGCTATTTTTTACAATTT-----------CGT----------TTTTTTCTCGATTTATT---CCG--CGCAAATCAAATTACCTCGACTTCCACTGTACGTTCTTCTCCGTTCAATGTACTCTTTCTTGGCTTGCTTTGCTGCAACATTGAATGGTTTTCCTACTCCGAGCTGACGGAGTCCTGA----AAA
s cb4.chrX              11097378 187 + 21540570 --CGTA-CACCTTGCGCAGATGTCTTTTT----GTAGGCctcttttctcgttttttt-----------aa--------------------aatttatttaacCC--CGTAAATCCAATTACCTCGACTACCACTGTACGTTCTTCTCCGTTCAATGTACTCTTTTTTAGCCTGCTTCGCTGCTACGTTGAATGGTTTTCCAACTCCAAGTTGACGAAGTCCTGA----AAA
i cb4.chrX              I 1156 I 82
s caeRem4.Crem_Contig0   2464604 190 -  4500979 --AATA-AACATTGCGCAGATGt-ttttt----gcagacggagtttttcatctcttt-----------cat----------ttttt---caatttatt---ccg--CGCAAATCCAATTACCTCGGCTTCCACTGTACGTTCGGCGCCGTTCGATGTACTCCTTTTTGGCTTGCTTCGCTGCAATATTGAATGATTTTCCAACTCCAAGTTGACGTAGACCTGC----AAA
i caeRem4.Crem_Contig0  I 5 I 103
s caeSp111.Scaffold626    867703 187 +  1189296 -------CACCTTGCGCAGATGT-TTTTTGCTAACAGAT-----Gttgaatcttttt-----------cat----------tttttttcaaagttatc---CCG--CGTAAATTCAATTACCTCGACTTCCACTGTACGTTCTTCGCCGTTCAATGTACTCTTTTTTGGCTTGCTTCGCCGCAACATTGAATGGTTTTCCGACTCCAAGTTGACGTAAACCTGC----AA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4023958 210 +  4147112 --CATAACACCTTGCGCAGATGt-ttttt--cagtatatttttcattcaatctcttttttcttattcatat----------ttttttttcaatttatt---ccg--CGCAAATCCAATTACCTCGACTTCCACTGTACGTTCTTCTCCGTTCAATGTACTCTTTTTTGGCCTGCTTCGCCGCAACATTGAATGGTTTACCGACTCCGAGTTGACGTAGACCTTAAATGAA-
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17990    87922 202 +   357190 ctctca-cattctgggcacgcgg-ttttt----gt-----tttctttttttcatttt-----------cagaccCTGGGAATTTTGTTCTAATTTGTT---TCGTCCGAGGATTAAATTACCTTGACTTCCGCTATGTGTCCTTCTCCGTTCAATATACTCTTTTTTCGCCTGCTTCGCCGCTACATTGAACGGTTTTCCGATGCCTAGTTGACGAAGTCCTGC----AAA
i caeJap4.Scaffold17990 C 0 I 38

a score=0.000000
s ce10.chrX              5767307 1 + 17718866 T
e caePb3.Scfld02_0       4024168 0 +  4147112 C
e caeJap4.Scaffold17990    88124 38 +   357190 I
e cb4.chrX              11097565 82 + 21540570 I
e caeSp111.Scaffold626    867890 0 +  1189296 C
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=-2955.000000
s ce10.chrX              5767308 155 + 17718866 CATTTTGTCAACCGATATTGAATATTTCGCATGTTTTTGCTAAATTT--------------------TAACGACGCCAAACATATATTTGGACAAAAAACTTTGATTACCTTTCCTAATGTTTCGAATGAATTTTTGAATTTTGGCAAAAAAATTTATAATTTCAAGTTGAATAT
s caeSp111.Scaffold626    867890 115 +  1189296 -GATTTG---------------CCTctaacttgtttttctcagctt---------------------ttttgacatttagaatatttgcaaaaaattagcttcgtttcagtttt-------------------tttgaattttctcataaaaattcaagtttttagaaCAA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024168 135 +  4147112 -GATGTGT------ATAGTAATTCTTTAGTtaggtttttttggatttcaattAGCTCTGAGAAATTGTCATGACCTTCAAGACTTTTCTACATAATAGACCTTGTTTC--TTTC-------------------TTCGAAGCTTTT-----GTACTcaggtttcaaaaa-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124  38 +   357190 I
e cb4.chrX              11097565  82 + 21540570 I
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=1328.000000
s ce10.chrX              5767463 40 + 17718866 TTTTGTGCTATTTTTCGAAAAATTCAAAGCACTGTTGAAA
s caePb3.Scfld02_0       4024303 36 +  4147112 ----gtcttattttctggaaaatttaagaagtttttaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124 38 +   357190 I
e cb4.chrX              11097565 82 + 21540570 I
e caeSp111.Scaffold626    868005  0 +  1189296 C
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=0.000000
s ce10.chrX              5767503 377 + 17718866 TATAAATATTTCAAGCGTAAGCTACACTTAAAACTggaagaaatttttttgactgactatttccaaagaattgatgaaaactgagtttttaccgctttttgactcgaaataaaacattttcaaaattttgtgaaaaacttttaagttgatatttggtcatttcagcaccgtgagaatggtttctattaatgcccccactggccgttttccaccttAAAGGCAAAATGACCACGCACGAAACTGCACTTCTAGATATTGTATGTATATAAGATTTTCAGAAAAATTACATCCAAAAGTTAGAGTTAGATTGTGTTTTTCTAATTTTCTCAGCAAAAGGAAAGAAAAAAAACATAATAACAATCTCCCACCTGGTTTTT
e caePb3.Scfld02_0       4024339   0 +  4147112 C
e caeJap4.Scaffold17990    88124  38 +   357190 I
e cb4.chrX              11097565  82 + 21540570 I
e caeSp111.Scaffold626    868005   0 +  1189296 C
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=749.000000
s ce10.chrX              5767880 18 + 17718866 TCCCGAAAACTCAATTTT
s caePb3.Scfld02_0       4024339 18 +  4147112 ttctgaaaacatgaattt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124 38 +   357190 I
e cb4.chrX              11097565 82 + 21540570 I
e caeSp111.Scaffold626    868005  0 +  1189296 C
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=-311.000000
s ce10.chrX              5767898 6 + 17718866 CTTACA
s caeSp111.Scaffold626    868005 6 +  1189296 CCTAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024357 1 +  4147112 -----c
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124 38 +   357190 I
e cb4.chrX              11097565 82 + 21540570 I
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=326.000000
s ce10.chrX              5767904 11 + 17718866 TTCCTCTTACT--
s cb4.chrX              11097647 11 + 21540570 TTCTTTTCTTT--
i cb4.chrX              I 82 C 0
s caeSp111.Scaffold626    868011 11 +  1189296 --TTccttattca
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024358  9 +  4147112 --tCTCTCATT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124 38 +   357190 I
e caeRem4.Crem_Contig0   2464794 103 -  4500979 I

a score=-3241.000000
s ce10.chrX              5767915 14 + 17718866 ---AACATTC-TTTTAAA
s cb4.chrX              11097658  7 + 21540570 ---AGTATTT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2464897 14 -  4500979 ---aacGTTT-GTTGGCA
i caeRem4.Crem_Contig0  I 103 C 0
s caeSp111.Scaffold626    868022 18 +  1189296 aaaaaccatccAGAGAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024367 10 +  4147112 AAAAATCTTC--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88124 38 +   357190 I

a score=271339.000000
s ce10.chrX              5767929 393 + 17718866 CAAACCTTGTATATGACCGCTGTATCCGGCTGTTGGGATGTCTTCTGTTTCATCTTTCTACAACA--AAACAA---AAAATCACATTAATCCAATAAAACTTTTTTTCTGTTCTTGGCGAAAAAAGCACTAACCTCAAGAG---CACCAAGCTTTCTCGAAACTCTTTGTCGGCTCGGAGGTCGTTGGTTCCAATTTCCGCCGCTCACCATTTGTCCGCCGTTCGCAATTTCCCGTCGCTCCTTGAAATATATGAGCTTGAGCGTTTT----AGAAAGAACGACGAGAAT------------AAAAAA-----------------ACGCATTTGTTTCAGCCC------C----------------AA--ACCAACCTGATTTCTTTTCACTTCTCCTTTACTCCACCAACCACTCTCGATCCCGTCAAACGGATTGCTTTCGATTTCTGAAAGCAAA
s cb4.chrX              11097665 404 + 21540570 CTAACCTTGAATGTGCCCGCTATACCCAGCTGTTGGAATGTCTTCCGTCTCATCCTTCTGCAAAAATAGCACA---AAACAACAATGAGACCAATCATT-----TTCGT-------------------CTAACCTCGAGTG---CTCCAATTCTTCTTGAAACTCGCTGACGACTTGGCGGCCATTGGTTCCAATTGCCGCCGCTCACCATTTGTCCGCCGTTCGCAATTTCCCGCCGCTCCTTGAAATAT-CGAGCTTGAgcttttttgttcgaaaaaaaaataaagag------------aatgAAGAAGCGAAGCGTCAAATACGCATTCGTTTCAG---------TTGCCTTTCTTTCTGTGGT--ACCAACCTGATTCCTCTTCACTTCTCCTTTACTCCACCATCCACTTTCGATTCCATCAAACGGAttgttttcgatttctgaaagaaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2464911 405 -  4500979 CTCACCTTGAATATGACCACTATACCCCGCTGCTGGAATGTCTTCAGCCTCGTCCTTctgcaaga--agaaaa---aaacaacgattAGCCCAATAAAA-----TGATTGCTAATGAC----AAGCCACTAACCTCGAGGG---CCCCGAGTTTTCTCGAAACTCTTTGTCGACTTGGCGGTCGTTGGTTCCAATTTCCTCCGCTCACCATTTGTCCGCCGTTCGCAATTTCCCGTCGCTCCTTGATATATATGAGCTTGAgcttttt-----gaaagaagaagaaaaagaaaagaagcaaaaataaagaagcaaaa----gcaaaCGCATTTGTTCCAG---------C----------------AA--ACCAACCTGATTTCTTTTCACCTCTCCTTTACTCCACCATCCACTCTCGATTCCGTCGAACGGATTGCTttcgatttctgaaagaaag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    868040 373 +  1189296 CTTACCTTGAATATGACCACTATATCCAGCTGCCGGAATGTCTTCTGTTTCATCCTtctaaataa--agaaaattcaTATTCTCATTAATTCCATCC------------------------------ACCAACCTCTAAGG---CCCCGATTCTTCTGGAAACTCTGTGCCGACTCGGAGGTCGTTGGTTCCAATTTCCCCCGCTCACCATTTGTCCGCCGTTCGCAATTTCCCGTCGCTCCTTGAAATATATGAGCTTGAGcttttt----cgagagaaaacgccgaag------------aaaaaa------------------cgcaTTTGTTCCAGCTCACaaaaa----------------aaCCACCAACctgatttcttttcaccTCTCCTTTACTCCACCAGCCACTTTCGATTCCATCGAACGGGTTGCTCTcgatttctgaaagagaG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024377 389 +  4147112 ---ACCTTGAATATGCCCGCTGTATCCAGCTGCTGGGATGTCTTCAGTCTCATCCTTctgcaaaa--agagagaaaaaacaacaattagGCCAATCAAA---------TGTTAATGAC----AAGTGACTAACCTCGAGAG---CTCCAATCCTTCTCGAAACTCTTTGCCGACTCGGGGGTCGCTGGTTCCAATTTCCTCCGCTCACCATTTGTCCGCCGTTCGCAATTTCGCGTCGCTCCTTGAAATATATGAGCTTGAGCTTTCC----cgaaagcgaaaaaaaaag------------aaaaaaagaaagaa-----aaaagcgcatttgttccag---------a----------------aa--accaACCTGATTTCTTTTCACCTCTCCTTTGCTCCACCAGCCACTTTCGATTCCGTCAAACGGATTGCTTTCGATTTCTGAAAGTAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    88162 332 +   357190 CAAACCTTGAATATGACCGCTGTAACCTGCTGCTGGAATGTCCTCAGCGTCATATCTCTGTGAAA--AATAGATG-gaaaaaccataaaacttATCCTC---------------------------CACTAACCTCAAGCGTGCCCCCCTGTTTTCTCGAACCTCTTTGTCGACTTGGCGGTCGTTGGCTCCAATTTCCACCACTCACCATTTGCCCACCGTTCGCAATTTCGCGTCGCTCCTAGAAAT---CAAGTGTACACGTGCC----------------------------------AAAACA-----------------------------------------A----------------GA--GCAAACCTGATTTCTTTTAACTTCTCCCTTGCTCCACCAGCCGCTTTCAATTCCGTCGAACGGATTGTTTTCGATTCCTgagcacaga
i caeJap4.Scaffold17990 I 38 I 136

a score=-9595.000000
s ce10.chrX              5768322 55 + 17718866 GCGA----------------------------TTTGTAACATTTGTTGTTGGAGCAAATGGAGAACAATATGTGGGAAAACAA------
s cb4.chrX              11098069 71 + 21540570 aaaattaaggaaatCAAGAAGTTAGGAAGTGATTTGTAACATATGCTAGCTGGAC------GGACTAGAA------AAAACAA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2465316 51 -  4500979 agga-gaagagtaT-------------AGTGATTTgttacattttttgg------------aaaacaaca------aaaacaa------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    868413 46 +  1189296 GAGG-AAGTAGGAG----------AGAAGTGATTTGTAACAATAT----------------------ATC------AGTAAAAAA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024766 56 +  4147112 GAGA-AAGTAGAGt--------------gttttttgtaacatttttcCA------------GGAGCAATA------AGTAGAAAAACAA
i caePb3.Scfld02_0      C 0 I 21
e caeJap4.Scaffold17990    88494 136 +   357190 I

a score=-7594.000000
s ce10.chrX              5768377 38 + 17718866 AAATCCTGTTTTTATTTGAAAATT-ACTTTATGA--------ACTTT-----
s cb4.chrX              11098140 26 + 21540570 ----------GGGATCTAAAAGTT-AC----GGA--------ACTA---ATC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2465367 38 -  4500979 ----------tagaTTGGTCTGCTAAC----GGACGTCATGTACTAGGTATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    868459 28 +  1189296 ------CAACTGGTCTAGTAAACT-AC----TGA--------GTTAG-----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4024822 21 +  4147112 I
e caeJap4.Scaffold17990    88494 136 +   357190 I

a score=-11147.000000
s ce10.chrX              5768415 43 + 17718866 CT--TATCAAAATTTTTGAATT----------TTTTTGTCCA--------------AAAGTGTTGCTTT
s cb4.chrX              11098166 43 + 21540570 TT--CCGGCGATTTCTTGAGTT----------GTTGTTTACA--------------AACATCTTACTTT
i cb4.chrX              C 0 I 1064
s caeRem4.Crem_Contig0   2465405 57 -  4500979 TT--TTGTAAGGtccttcaatt----------tttggataaaaagcCTTGTAGTACAACATTTAAGGGT
i caeRem4.Crem_Contig0  C 0 I 13
s caeSp111.Scaffold626    868487 34 +  1189296 ----TTGCAGCTTTTTTGCCGTGCAAAAGTAGTCTGTT-------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4024843 27 +  4147112 CTAgttgcag-ttttttgtttt----------tctttt-------------------------------
i caePb3.Scfld02_0      I 21 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I

a score=-11925.000000
s ce10.chrX              5768458  74 + 17718866 TTGAAAACAAA----------------------TTGATAATTAAAATTACATCGAGAAAACAT--ATAAACTTGTTTATTTG-------------------------CTGCAAGTTTTCAATT-------
s caeRem4.Crem_Contig0   2465475 128 -  4500979 CAGGAAACTTCATCAGATCTTAGAAACTGATGCCTGA--TAGAAAAATGTGTCAATGACCTAATGATCAtcgtatttttttgttttttgtatcaaaatgaTGTGTGAACTTGTTTAATTTGTTTCTTGAC
i caeRem4.Crem_Contig0  I 13 C 0
s caeSp111.Scaffold626    868521  65 +  1189296 ---------------------------------CTGATTTATTCAAGAAAACCTATTTAAGATTTTTTATCATATTTCATTG-------------------------ATTCAATTGCTCAGTT-------
i caeSp111.Scaffold626  C 0 I 206
s caePb3.Scfld02_0       4024870  64 +  4147112 ---------------------------------ctgaactgGAAAATAATGAC-ATGGACCGTAGGCTATCATAATTAACTG-------------------------AGATTACAAACAAGTT-------
i caePb3.Scfld02_0      C 0 I 7
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I

a score=-16263.000000
s ce10.chrX              5768532 180 + 17718866 AAACTTTTTCTGACAAAAAAAAAGAAATATGATTTCCTCATTC------------CATCT-------------------------AGAC---------------------TACTTTTCCGACAATT-----TTCAAA---------GCCAATTT-------TGAAAATCT-------------AACTGTGGACCAGGATGAC----TGCTCCAG-----------AATTGGAAAGTGTTTAGC---GGCTAGAATATTCGA------TTTTTTAAATC--TGATTTCCTGTTATATAT-------------------
s caeRem4.Crem_Contig0   2465603 155 -  4500979 ---AACTTGTTA------------------TGTCCCTTTAGGTAAAAAACA----GAGCT-------------------------AAGC---------------ATGCCTTGTTAt---------------cacaaaaa-------gtgaaatt----------aaaTCT-------------------------GAATGACGTAGTACTTCTG----------------------TTTTCTCTCTGGCTGGCATTTTCAGGCATGTCTAGTTATATTAACGGTTTCCTTAT-TACATAT-----------------
i caeRem4.Crem_Contig0  C 0 I 36
s caePb3.Scfld02_0       4024941 313 +  4147112 aaaattttattaagaaaaacaatgaaatacTACCTTCTGACTTTAACAGCATTATGAGCCTGTTCCAATCCTATTTCAGTCTTAAAAgctttccgaatttttcggTGCATTTCTATTTCTACAGTTCCgagctcaaaaatgtttgcgTGTGGTTTAGGTAATAGAAATCTAGTTTCctttcgaaattct----caaaatgaataattgttGCAGATACGGTTTAAGTCTAACAActtttccacttttgttttgacttttgcacatctttctttctttccatgttatgtttttATGCGCATTTCCAGGTGGAAAACAT
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I
e caeSp111.Scaffold626    868586 206 +  1189296 I

a score=-1111.000000
s ce10.chrX              5768712 29 + 17718866 CAAGCCATTTCTAGC------------------CCCTG---TCCAATTTA----------
s caePb3.Scfld02_0       4025254 60 +  4147112 CAATATGTTCTTGGCATTCAATGTTATCATGAAcactgaaattaaatttgaatgACGCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I
e caeSp111.Scaffold626    868586 206 +  1189296 I
e caeRem4.Crem_Contig0   2465758 36 -  4500979 I

a score=-288.000000
s ce10.chrX              5768741 19 + 17718866 TTCCTTTTAC--TTCCTTCTC-
s caeRem4.Crem_Contig0   2465794 10 -  4500979 ------------TTCCTTTTCC
i caeRem4.Crem_Contig0  I 36 C 0
s caePb3.Scfld02_0       4025314 22 +  4147112 GTCGTTCTATGTCTGCTTTTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I
e caeSp111.Scaffold626    868586 206 +  1189296 I

a score=-5594.000000
s ce10.chrX              5768760 35 + 17718866 AGT-----------TATT-------TTTCACATTCTAGAT--------AAAGCCCGGCTAC
s caeRem4.Crem_Contig0   2465804 27 -  4500979 AGC-----------TGT-------------TGTTATGTGA-------TGAAGCTCTAC---
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    868792 37 +  1189296 aac-----------tatttcc----tCTTATTCTATTCGT-------GAAAACTCTGTT--
i caeSp111.Scaffold626  I 206 C 0
s caePb3.Scfld02_0       4025336 61 +  4147112 AGCCTTGCAGGTGGTATTTAcggtttttcatattttttgtctgaaaggAAAACCCAACCAC
i caePb3.Scfld02_0      C 0 I 47
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I

a score=0.000000
s ce10.chrX              5768795 8 + 17718866 GCACATAA
e caePb3.Scfld02_0       4025397 47 +  4147112 I
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I
e caeSp111.Scaffold626    868829 0 +  1189296 C
e caeRem4.Crem_Contig0   2465831 5 -  4500979 I

a score=43.000000
s ce10.chrX              5768803 45 + 17718866 ACACAAAACATACAATTAGTGTAACCAAGTAACTCT-----TCAGTGAGT
s caeRem4.Crem_Contig0   2465836 47 -  4500979 ---acaaaaaaatgaataaggTAATCAAGTAACTCCTATACTCCGTGACT
i caeRem4.Crem_Contig0  I 5 I 5
s caeSp111.Scaffold626    868829 27 +  1189296 ---CAGAACATATGATTAAGGTGGTTTCG------G--------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025444 36 +  4147112 ACACGGAACATATTATTAAGGTTACCGtgtccctct--------------
i caePb3.Scfld02_0      I 47 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I
e cb4.chrX              11098209 1064 + 21540570 I

a score=6918.000000
s ce10.chrX              5768848 18 + 17718866 TTGTCAATTTCCGCCCCA
s cb4.chrX              11099273 18 + 21540570 TTTTCAGTTTCCGCATCA
i cb4.chrX              I 1064 C 0
s caeRem4.Crem_Contig0   2465888 18 -  4500979 CTGTCAGTTTCCGCCTGA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    868856 16 +  1189296 --TTATGTTTCCGCTTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025480 16 +  4147112 --tttttcttccgctTCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88494 136 +   357190 I

a score=86336.000000
s ce10.chrX              5768866  92 + 17718866 ACTCACTTCGTGGCATACTTTTGCTTCTTTGTTTCTGTTGCTCTTGCTGA---------CC---TCTCTG---TCC------ATTTTCATATTTTGTTCTTCTATCCTGGAA---A
s cb4.chrX              11099291 101 + 21540570 ACTCACTTCTTGGCATACTCTTGCTTCTTTGTTTCAGTTGCTCCTGCTGTCCACCACCACC---TCTTTG---CCC------ATTTTCATATTCTGTTCTTCTGTCcttaaa---a
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   2465906  92 -  4500979 ACTCACTTCTTGGCATACTTTTGCTTCTTTGTTTCAGTTGCTCTTGTTGC---------CC---TCTTTG---TCC------ATTCTCATACTCTGTTCTTCTGTCCTGAAA---A
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold626    868872  95 +  1189296 ACTCACTTCTTGGCATACTTTTACTTCTTTGTTTCAGTTGTTCTTGCTGT---------CC---TCTTTGTCCTCC------GCTTTCATACTCTGTTCTTCTGTCCTGAAA---G
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025496  95 +  4147112 ACTCACTTCTTGGCATACTTTTGCTTCTTTGTTTCAGTTGCTCTTGTTGT---------CC---TCTTTG---TCC------AGTTTCATACTCTGTTCTTCTGTCCTGAAACTcg
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    88630 101 +   357190 ACTCACTTCTAGGCATGCTTTTGCTTCTTTGCTTCATTCCTTTGTCTTGT---------CCTTGTCCTTG---TCCCAGGCGGTCCTCAAACTCTGTCCTTCGATCCTGCAA---a
i caeJap4.Scaffold17990 I 136 I 159

a score=-618.000000
s ce10.chrX              5768958 2 + 17718866 AA--
s caeSp111.Scaffold626    868967 2 +  1189296 GA--
i caeSp111.Scaffold626  C 0 I 21
s caePb3.Scfld02_0       4025591 4 +  4147112 aaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88731 159 +   357190 I
e cb4.chrX              11099392 16 + 21540570 I
e caeRem4.Crem_Contig0   2465998 27 -  4500979 I

a score=183.000000
s ce10.chrX              5768960 33 + 17718866 TTTGATATCGTATTTTAGTGAAATCACAACCAA
s caePb3.Scfld02_0       4025595 33 +  4147112 tagtaaaaattatttttgaaaagtggtaACTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88731 159 +   357190 I
e cb4.chrX              11099392 16 + 21540570 I
e caeSp111.Scaffold626    868969 21 +  1189296 I
e caeRem4.Crem_Contig0   2465998 27 -  4500979 I

a score=0.000000
s ce10.chrX              5768993 437 + 17718866 TTTTGAATGCTGCTAGTCTTAAAACTCAGAAACTTGTCCGTTCAAACTGCCAGGTTTTCGAAAAAGTTCAAAATGGATATTGTTAGCGAGAAAAATGTTTAATACCCCTTCTATTGTGGattaattttaaaaattctctaaataaaaaaaaattCCCTGAAAACCCGAAAGGCCTAAATTCTAAAAAAAAACAATTTCCGTGAAAACATACGTGTTTTTATTGCAACACCTAATGAAACAGTTGGAACTTTTTTTGCTCTATTTCAAAAAATTTCAGTAAAAAAAATCAAATTTGTTTCATATAACAGGGCTGTAATCAAATAATTAATTATACAATAAAAAAATGGTATTCGTTTTCGAAAAATGCTTTTGAATAACCTTAACCTAATATGAGATTAGCTCAAATCTCATATAACAAATACAAATTGCTATCCAGC
e caePb3.Scfld02_0       4025628   0 +  4147112 C
e caeJap4.Scaffold17990    88731 159 +   357190 I
e cb4.chrX              11099392  16 + 21540570 I
e caeSp111.Scaffold626    868969  21 +  1189296 I
e caeRem4.Crem_Contig0   2465998  27 -  4500979 I

a score=242.000000
s ce10.chrX              5769430 4 + 17718866 TTTT
s caeRem4.Crem_Contig0   2466025 4 -  4500979 TTTC
i caeRem4.Crem_Contig0  I 27 C 0
e caePb3.Scfld02_0       4025628 0 +  4147112 C
e caeJap4.Scaffold17990    88731 159 +   357190 I
e cb4.chrX              11099392 16 + 21540570 I
e caeSp111.Scaffold626    868969 21 +  1189296 I

a score=763.000000
s ce10.chrX              5769434 8 + 17718866 AAGATTTC
s cb4.chrX              11099408 8 + 21540570 AAAAGCTC
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2466029 8 -  4500979 AATATCtt
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4025628 0 +  4147112 C
e caeJap4.Scaffold17990    88731 159 +   357190 I
e caeSp111.Scaffold626    868969 21 +  1189296 I

a score=-2092.000000
s ce10.chrX              5769442 13 + 17718866 --------CACTTCTGT---TTTA
s cb4.chrX              11099416 14 + 21540570 CAT---CTCATTTCTCA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466037 17 -  4500979 catttcctcatttttca-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    868990 12 +  1189296 --------catttctttcaa----
i caeSp111.Scaffold626  I 21 C 0
e caePb3.Scfld02_0       4025628  0 +  4147112 C
e caeJap4.Scaffold17990    88731 159 +   357190 I

a score=25902.000000
s ce10.chrX              5769455 132 + 17718866 TTACCATTCTTCCGGACGGCTCTTCCCTCATTCCATAGTTTGCTGAATTCCGTTCAGAACCACCCATTCCAC--CGCCTCCTCCTCCATTGGCACCTCAAAATAAAATTGTC-ATTTATTTT--------GGACATCGTTTAA
s cb4.chrX              11099430  98 + 21540570 TTACCATTCGTCCGGATGGGTCTC---------CAAAATTAACCGCATTCCTGGAGGAGCCATCT---CCGCCGTTAGcgcc--------------tgaaaataaaa------------ttta-------gcacgtcatttcg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466054 117 -  4500979 ttacCATTTGACCCGATGGCTCCTCTCTCGCCGCGAAATTTGCAGAATTCCGGTTAGATCCATCC---CCGT--TTACTCCT--------------GGAAAACAAAATTGCCTATTTATTTTT-------GTCcgtcatttta
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869002 132 +  1189296 ttaCCATTCTTCCCGAAGGCTCTTCTCTTGTAGCATAATTTGCCGAGTTTCTGTTAGATCCATCG---CCAT--cggctcctcctc------ctcctgaAAACAACCATTTCTATTTATTCCCTCATTCCATTCGTCATCTAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025628 120 +  4147112 TTACCATCCGTCCTGTTGGTTCTTCTCTTGTCGCGTAATTTGCAGAATTTCTCATAGATCCATCC---CCAT--TGGCCCCT--------------GAAAAACAACATTGCCAATTTATTCCC----AGCTCTCgtcatttta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    88731 159 +   357190 I

a score=117522.000000
s ce10.chrX              5769587 127 + 17718866 TTTATTTC-------ACCCAAGTGTTGTTGCTG------CTGCATTCTCATTGCCATTTGAAGATTTTGCATATCCATTTGCATTCTCATGAACCGGTCTTGCAACTCATCATTCGTCATTTCCGTAAAGTTTTTCATTT
s cb4.chrX              11099528 140 + 21540570 aaaactttggtGTTTGCCAGAGTGTTGTTGTTGCTGGTTCTGCATACTCATTGCCATTTGAAGGTTCTGCATATCCATTTGCATTTTCATTAGCCTTTCGCGAAGTTCGTCATTCGTCATTTCCGTAAAGTTTCTCATTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466171 129 -  4500979 ttcatttt--tgcttGCCTGTGTGTTGCTG---------CTGCATACTCATTGCCATTTGAAGATTCTGCATATCCATTTGCATTTTCATTAGCCTCTCACGAAGTTCGTCATTCGTCATTTCCGTAAAGTTTCTCATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869134 129 +  1189296 TTTATGGT--TGCTTGCCCAATAGTTGATG---------CTGCATACCCATTGCCATTTGAAGATTCTGCATATCcatttgcattttcattAGCCTCTCACGAAGTTCTTCATTCGTCATTTCCgtgaagtttttcattt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025748 129 +  4147112 ttcatttt--tgcttgCCCATGGGTTGTTG---------CTGCATACCCATTGCCATTTGAAGATTCTGCATATCCATTTGCATTTTCATTAACCGCTCACGGAGTTCTTCATTCGTCATTTCCgtaaagtttttcattt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    88890 127 +   357190 tttgtttt---gccT-CCAGTCTGCGGCTG---------ATGCAtattcattgccatttgaagaTTCTGCATATCCATTTGCATTTTCATCATTCGCTCGCGAAGTTCGTCATTCGACATCTCCGAGTAGTTTCTCATCT
i caeJap4.Scaffold17990 I 159 I 224

a score=36403.000000
s ce10.chrX              5769714 150 + 17718866 GTTCGGCTCCG---------CCCATTGCCATTGATCTCTGTAAAGCT-----AT---GTCATTTAACACA--TGGAATTATTTTGGTAGTGTTT----TGCTCACGTGCTCTCCGAAAGAGTTCTGGTTCAAAGTGTTTTCTGTTTGAATTTGTGGAACTCCTGAAAAATGTT--------
s cb4.chrX              11099668 149 + 21540570 GTTCATCTCCTGC------ACCCATTGCCATTGATCTCtgcaaaaaatctcatttgattatttttacCCA------------------AATATA----TCCTTACATTCTcagcagaaaaattttgattcgtCGCATTTGGTGTTTGATATTGTGAGCCTTCTTAAAAA----ATAGAgtc
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2466300 153 -  4500979 GTTCATCGCCT---------CCCATTGCCATTGATCTCTGCAAAAAG-CTCTTT---TTCTGTTCACACATGTGGAATCattc---tcagtttt----tccttACGTTCTCCGccgaaaaattctgattcgAAGCGTTTGGTGTTTGAAGTTGAGCGCcttctgaaaaa----gt----tc
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    869263 145 +  1189296 gttcatctcctcctcctc---------tcatTGATCTCTGCAAATAA-----TG---TGCAATTCTCACATGTGGATTCATTC---TCCCGTTT----TTCTTACGTTCTCTCCCGAATAATGTTGATTCGAAGCATTTGGTGTTTGAAGTTGAGCCCCTTCTGTAACA------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4025877 153 +  4147112 gttcatcccctcctcctccacccaTTGCCATTGATCtc--------------tg---ttcaattttcacatgTGGATTCATTC---TTGACTTTTCAATTCTTACgttttctccagaaaaatgtTGGTTCAAAGTGTTTGGTGTTTGAAGTTGAGCTCCTTCTGAAACACGGT--------
i caePb3.Scfld02_0      C 0 I 122
e caeJap4.Scaffold17990    89017 224 +   357190 I

a score=-10127.000000
s ce10.chrX              5769864 110 + 17718866 GACTTCAGTGAATGTATGCCATCATTCTACCGGATTTTTTAAAAGCTGGCTCTAGTGTTGATTT-ACACTCAAAACCGTCCAAAATATTTGATTATAATAATCAGAGCCTT
s cb4.chrX              11099818  41 + 21540570 aacttcaat---------------ttttaa---------aaaaaatt--------------tactacGCTCACTGGTTT--------------------------------
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2466454  31 -  4500979 aacttcaat---------------------------------aaatt--------------ttc-acgCTGAGTGACTC--------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    869408  57 +  1189296 -AATTCAAA---------------CGCCAC---------TATAA-----------------TTC-ACGCTCACTGcatctcaaaa-----------aacattccTAACCCC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4026030 122 +  4147112 I
e caeJap4.Scaffold17990    89017 224 +   357190 I

a score=-32753.000000
s ce10.chrX              5769974 109 + 17718866 CAAAATGTTAAAGTAAATTTTTTTAAAATTTCAGTCAACATTTTGGTAAATTGC-GAAATTTTCCACAATTCTGGAAAATTT-------------------------------------------AAAAAAACTGAGACCATTCAAAAATGTA-
s cb4.chrX              11099859  70 + 21540570 CACA---CTAACCAACAT--------------GAGCCATATTT--ACAAACGGTGAAAAATTCCCCTCTTCCGAAGCCGCTC--------------------------------------------------------------AAAAAAG---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466485  15 -  4500979 CACA---------------------------------------------------AAAAACACATC----------------------------------------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869465  27 +  1189296 -------------------------------------------------------CCAATTTCATACTTTCcggtgtttttt------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4026152 117 +  4147112 --------aaaaatgaaa--------------aagcaatct--------------gaaattcaatactCTTCTAGGTTTCttactttcattttcctttcgtttctcgttttttcataataataataataataataatacc-cggaaaaaagaaa
i caePb3.Scfld02_0      I 122 C 0
e caeJap4.Scaffold17990    89017 224 +   357190 I

a score=-18267.000000
s ce10.chrX              5770083 215 + 17718866 GATTTGACACTTTTCGATTTCAAATTAATCTATTTAATTATTAGAACGTTTT-TTTTCAATTTTGCCAACTTTACCTTGTCGCAGCGAAGGGGTAAAATATTTAAAGTTTTTATGAAGTTAGTTTCCGATTTTGAAGATTTCGGCAATGACACTATAATTGCTCAAAAACTTTAAAATCTTTTTTTTTCTACCGTCATTTAGAAAACAATTATCAT
s cb4.chrX              11099929  65 + 21540570 ---------------------GAATCAATTCACAAA---TATGAAACATGAt---------------------------------------------------------------acgtt---------------------------------------tcct--------------ttttttttaattttttggc------aaTGC-----TCAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466500 114 -  4500979 ------------------------TCAATCTACCAA---ACTAGAGCATGTTTATTACAAGCTTGC------TATTTTCTCCCCGCAAGAAGA-------------------ATCACATTGAAACAcga------------------------------tact--------------ttttttttacttttttgtc-ttcaaaatat-----tcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869492 111 +  1189296 ---------cttgttg-----gtGTCA---CACCAA---GCATCAACATCTT-----------------------------ATAGCAAAAAGa-------------------atcaatctgaaattcaatact------------------CCTAGGTTTCCT--------------agttttgttcttctttgtGGTTTGGAAAAC-----CCAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4026269   0 +  4147112 C
e caeJap4.Scaffold17990    89017 224 +   357190 I

a score=-7006.000000
s ce10.chrX              5770298 14 + 17718866 T--------A--TATATTTCCATT
s cb4.chrX              11099994 13 + 21540570 A-----------CATACTCTTATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466614 24 -  4500979 aacAATGTCAGTTGTAATAATATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869603  5 +  1189296 G--------AGCT-----------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990    89241 14 +   357190 ----------TATATAATTAAATT
i caeJap4.Scaffold17990 I 224 I 1
e caePb3.Scfld02_0       4026269  0 +  4147112 C

a score=100712.000000
s ce10.chrX              5770312 119 + 17718866 TACTCTTACCAGTTCCCGATGAATTTCTTCCAGTGAACCCGCTGTTCTCACGAGATCCTGCAACGTATCGGCTACCAACCTGCCATTTTGCGCCAGGAATATATCCGGTGAAACCTGGA
s cb4.chrX              11100007 117 + 21540570 --TTCTTACCAGGTACCGAAGCATTCCTATTTGAGAATCCACTGTTTTCCCGTGAGCCGGCAACGTAGCGACTTCCGACCTGCCATTTTGCGCCAGGTATATATCCGGTGAATCCTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466638 118 -  4500979 -ATTCTTACCAGGTCCCGAAGCGTTTCTTGTCGAGAATCCACTGTTTTCGCGTGATCCAGCAACATATCGACTGCCAACCTGCCATTTTGCGCCAGGAATATAACCGGTGAAACCTGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869608 113 +  1189296 GATTCTCACCGGG------AGCATTTCTGTTTGTGAATCCACTGTTTTCACGAGATCCAGCAACGTAACGGCTACCTACTTGCCATTTTGCGCCAGGAATATAACCGGTGAAACCTGGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4026269 119 +  4147112 tattctcACCAGGAACTGAAGTGTTTCTGTTCGAAAATCCACTGTTTTCACGTGATCCAGCAACATAACGACTTCCAACCTGCCACTTCGCTCCAGGAATATAACCGGTGAAACCTGGA
i caePb3.Scfld02_0      C 0 I 311
s caeJap4.Scaffold17990    89256 110 +   357190 TCTTCTTACCAGA---------ATTTCTCATCTCAAAGTTGCTATTTTCCCGCGAACCTGCCACGTATCTGCTGCCAACCTGCCATTTTGCGCCAGGGATATAGCCGGTGAAACCTGTC
i caeJap4.Scaffold17990 I 1 C 0

a score=7020.000000
s ce10.chrX              5770431 18 + 17718866 GTCAATTAAGTGTTAGTT
s cb4.chrX              11100124 18 + 21540570 GTCATTAAGAGGTTAGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466756 16 -  4500979 GTCGTTTAAAGGTTAG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869721 18 +  1189296 ATTAATTAGAGGTTAGTC
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990    89366 18 +   357190 GTCGTTAAGAGGTTGGTT
i caeJap4.Scaffold17990 C 0 I 1080
e caePb3.Scfld02_0       4026388 311 +  4147112 I

a score=-4639.000000
s ce10.chrX              5770449  7 + 17718866 -------TTAAATA--------------
s cb4.chrX              11100142 26 + 21540570 CGttt--ttgaagatatattttttaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466772 12 -  4500979 ----------------TGGTTGTTAATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869739 18 +  1189296 AGCTTGGTTAAACCCATA----------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4026388 311 +  4147112 I
e caeJap4.Scaffold17990    89384 1080 +   357190 I

a score=-81276.000000
s ce10.chrX              5770456 152 + 17718866 --------------------------------------------GTTTTGGAAA-TTCTG---GGGAAT------------------------------TGGGAT----------TTTT---TGCATATCGGAACATA---------------------------------------------------------AAGTGTAACTG----AATTTTGCTAGTTTCTTTTGAA---------------------TGAAATTAT--------------------TGGAGCATT--------------TTGAAGTTCTTATAATAAATTAAATAAG--TAGAACCGTACCTCAA------------------------------------TTTG--------------CAAAAC
s cb4.chrX              11100168 354 + 21540570 agttttttggcactagattttagattctcaaaaattgggaTTAAGTTCTCAAGA-GGTTGCAAATAATTCTAATCAAAtaatatttccaaaaagttatATTTAATTATATAACAGATTTTAaagtatatttttgaa-atttgaaattatttgagATGAGCAGTTGTTGCGCTGCTAGGAACTGAATACTGcttaaaaatatttctt--------aaattgagttttctcgaa---tttttaaatagtTACGT-TTAGATGATATTTAATTATGTTTcttgttttgaacttttcaaatt-----tatcaactgtttttttAACAGTTCGA------AACCATtattgctcaa------------------------------aaattattccactagttttgaa--ttttat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466784 166 -  4500979 ATGCGCATGACACT-------------------------------TTTGTTAAA-AGTTGCACCTGACT----------------------------TATTCAAT----TAGCAAATCT---AGTATATGTT---------------------------------------------------------------AAGTTTATCTC--------Atgtcaatttcattttaaacttttttaaatag------------------------------------cTGAACTGT--------------TTAgcttttttactcaaaatttg-------aataatggttatttaa------------------------------aa------------------aa--gttaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869757 127 +  1189296 --------------------------------------------GTCTTGTAAATAATAG---ATAATT----------------------------CATCAGGTGCACGAATGATTTT---TCCCT--------------------------------------------------------------------CAATATTCATT----AAC--------------------------------GGGAGGTATGAATCCCTAATCACTTTTG---------TTG-------------------------------------------------------------CTcca------------------------cttttgaaattatttg------ataTAA--GAAAAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4026699 256 +  4147112 --------------------------------------------gttttggaaa-attcg---atGAGT------------------------------TCGAACCTGTGAACCAACCC---AACCTGttgtaaaa-a---------------------------------------------------------caatttttattgcgAAAC-ATGGTGCACTTATTTGAG---GTCAAAAATTGGGAGGT-TGATgccgtttttcattttg---------taggATATCTCTGAACTTAAATACGAACTcccatttttctggttttacGCGTTTATCACGATTTCTCCATGCATGGGCATCGTGAACACACACCTATCTAAATCTTATGA--Agcatagaaacaaaaag
i caePb3.Scfld02_0      I 311 C 0
e caeJap4.Scaffold17990    89384 1080 +   357190 I

a score=13276.000000
s ce10.chrX              5770608 101 + 17718866 ACTTACCAGATATCGGTTGATTTCTATAGCCATTCGGCATTGCAA------ATCAAAA-AAGTATATATCTTGTTGTAAATCTATC------------AAACAGAAATATACTCGATGAT
s cb4.chrX              11100522 103 + 21540570 actCACCTGATATTGGCTGATTTCTGTAACCGTTAGGCATCGTGA------GCTGAG--AAGTG---TTGTTGTTTTGAATTTATCACTCTATGAAAGAAATAGAAAC------TGatat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2466950 107 -  4500979 ctTCACCTGATATCGGCTGATTCTTGTAGCTATTTGGCATTACAA------GTTGAG---CGTG---ATCTCGCTATATGTAGAATATGCTA-GCAGAAAACGGAAACGTGCTAGAAGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869884  92 +  1189296 ACTCACCCGATATTGGCTGATTTTTATAGCCATTCGGCATCGCAAGATAGTCTTTAT----------TTGTTGAAAT--GGAAGAT-----------AAAACGGAAATG-----AGTTCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4026955  96 +  4147112 actCACCCGATATCGGTTGGTTTCTATAGCCATTCGGCATTGCAA------CTTGTG----------TTGTTGATATCCAGCAAACGTGT---GTTGAAAGCGGAAATG-----TGGAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    90464  72 +   357190 ACTCACCAGAAATCGGCTCGTTCTTATAGCCAAGTGGCATCGTGA------TTTTATAGATGAG---ATTTTCTTATTGAT---------------------------------------
i caeJap4.Scaffold17990 I 1080 I 28

a score=3005.000000
s ce10.chrX              5770709 43 + 17718866 TCCTGCAATTCATATCATCACATGCATAGCTACTTGAACATGA
s cb4.chrX              11100625 40 + 21540570 agctgaaaatattatCATAA---GTGCTTCTCTCCTCATATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2467057 39 -  4500979 ATCTAAAAAC-CTCTGATAT---CCAAGTTTAGTTACATATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    869976 40 +  1189296 ATCTGAAAGCTTTAGCAACA---GCTCATCTACTTACATATGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4027051 40 +  4147112 ATCTGAAATATCTAACTACG---CCTCATCTACTTACATATGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90536 28 +   357190 I

a score=92198.000000
s ce10.chrX              5770752 310 + 17718866 ACACGTGAAAACTTTA---AAAGTATCAAA--------------GAGCAGAAAAAA-------GAGTAGGCAAAGGGCGCAGAGTGAAAAAATATACACATGCGCGACG-------CGCGCCTCGGCCCAAAATATTGTTTTGGACCACTTTGCCTGGCAACGGAAAGAATACGCCGAG----------AAAAAGAAAATGAAGAGAAGCAGAACTACGGGAGAAGCAT-----------GCTGCTTCTACAATTTTT------C--CCGAAG-CGACATTTA-CCAAGGAAACCCC-----CAAAAACGAAAGATGAATTGACATAAAG-CGTCACTCAAGTTGCAC-----------------TAC-TTGACTATAGAAATAATTGACATTGGT
s cb4.chrX              11100665 333 + 21540570 AAATATAGAGGCTCTGTG-AAAGTTtcaaa--------------gagcaaaaaaaaagcataTGCGGTGGcgaaa-ggaaaaagaagaaaaatatacaCACGCGCGAGAGATGCGGGGCCCT----CCTGGAATATTGTTTTGGACCACTTTGCCAAGCAACAGAAAGTATactccgagaa--------aaaaaagaagagaag---gggACGCTCGCG-----------------------GGCTCCACCAATTTTT------GTGCCGCGC-GGAGCTTTA-CCAGGGCAacgaat-ggaaaaaaaagaaggatgaaTAGACATAAAAGCGTCAGTCAAGTTGCAGTGGGAGCTCTTTCTTTTTGCGTTGACTATAGAAATAATTGGCATCGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2467096 310 -  4500979 ACATAAGAAAAGCTTGTG--AAGTttcaaa--------------gagcaaaaaaaa--catgagagTAGGCAAAA-GCGCATAAGAG-AAAATATACACATGCGCCA---------CGCTCTG-GACCCGAAATATTGTTTTGGACCACTTTGCCAGGCAACGGAAAGTATAcgtcgag----------aaaaaagaagagaag--aaggacgcTCGCATGGGGGACAT-----------GCAGCTTCTACAATTTTT------G----GCTA-GGACGTTTA-CCAAGACAacgac---gaaaaaaaagaaagatgaatAGGCATAAAA-CGTCGCTCACGTTGCAG-----------------TGTGTTGACTATAGAAATAATTGACATTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    870016 328 +  1189296 ACACAA------CACgtgaaaagtttcaaa--------------gagc-aaaaaaa---------ggaTGGAAAA-TCGTAGTGAGGAAAAATATATACATGCGTCCTA-------TGCTCTT-GACCCGAAATATTGTTTTGGACCACTTTGCCTGGCAACCGAAAGTATAcgttgagaaaaataagcaaaaaaaagaagaagaagaggagaagcgGA-GAGCAACGTGGTGGGACTCGGCTTCTCCTACAATTTTG------G---CGAGA-GGACGTTTT-CCAAGGAAACAAC----GTAAAAAGG--AGATGAATAGGCATAAAG-CGTCACTCAAGTTGCAT----GGACCAC------TGTGATGACTATAGAAATAATTGACATTGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4027091 312 +  4147112 ACACAA------CGCgttgaaagtttcaaa--------------gagcaaaaaaaa---------agatgtaggc----aagaaaggaaaaatataCACATATGCC-----------GTGCAT-GACCCGAAATATTGTTTTGGACCACTTTGCCAAGCAACGGAAAGTATAcgtcgaga---------aaaaagaaaaagaagcaaaagaagggCTCT-GAGAGACAT-----------GCTGCTTCTACAATTTTGTCCTCCG---AGAGAGGGACGTTTTGCCAAGGAAACCAc----gtaaaaaagaaagaagaataggCATAAAG-CGTCACTCAAGTTGCAT----GGCTCCT------TGTGATGACTATAGAAATAATTGACATTGGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    90564 226 +   357190 -------------------ttattttcaaacttgaaaagtaaatgaacaaaaaaag-------aatatcggaaaa-gaaaatgccagaaaaacaTACACATGT-------------CGTGTCC----------------------------TGCATGGCAACGAAAAGTAAacgttgtg----------aaaaaaaaagggaat------------------------------------------------------------g---------gGACCTTTG-CCAGGGAAACCacgaggagaaaaaaagaagaaagaaaaatgaatag-cAGCGACTACTCTGTCC---------------------CTGACTATAGAAATAATCGACGCGGGT
i caeJap4.Scaffold17990 I 28 I 1995

a score=7444.000000
s ce10.chrX              5771062 38 + 17718866 TT------GAACTTTTT--GTGAACCTAC-CCA----CGCCTGTTCTTTCT
s cb4.chrX              11100998 44 + 21540570 CCTGACATGAACTTTTT--ATGCCCTCGGTCTT----TAAATGTTC-TTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2467406 43 -  4500979 CC-GACGTGAACTTTTT--GTGCAATTAA-CTT----CAAATGttcttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    870344 46 +  1189296 CT-GACATGAACTTTCT---TGTGCTGCA-CTTGCCGactctgttcttttt
i caeSp111.Scaffold626  C 0 I 516
s caePb3.Scfld02_0       4027403 45 +  4147112 CC-GACATGAACTTTTTCTATGCACTCCC-CTT----Cctctgttcttttt
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990    90790 1995 +   357190 I

a score=-1294.000000
s ce10.chrX              5771100 29 + 17718866 --GAATAGGGGAAGGTTTTGATAAATAATCA
s cb4.chrX              11101042 28 + 21540570 ATGAAAA--GAACCATTCTGGCAAAAAATC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2467449 25 -  4500979 atgaaaa--gaatgttttc----aaacatca
i caeRem4.Crem_Contig0  C 0 I 602
s caePb3.Scfld02_0       4027449 13 +  4147112 --gaata--gaacaatt--------------
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I

a score=-10851.000000
s ce10.chrX              5771129 201 + 17718866 AAGCAAAATCTGTAGTTAGTTGTAATT-CATGGGAAACTTG--------------CTCTAAAAGGCCGATTTGAAACATCGGTAAAATTG--TTGAAAATATTTGA--GCCAAAATAACTACAAAAAATTTTTGAAAATTTTTTATTGTACACTCAAAAAGTGGCAATTACTAAGTTTGGGCTCTTTTATTCTGTAATCAGTAGCAGCAAGCACATCAAA
s cb4.chrX              11101070 166 + 21540570 -------ATCAGCAAGGAGATGTACAA-TATTGAAGGGGTGAAAATGATATTATCCAGTCAAA----GAGAACGAACATAAGTTAAATCGGATTAACATCGTCCGACTGTCAAAATAACCTAAAACCATc----gagaaatttaaa-atat-ttc---------cggttttcaattttga----------------------aaaag--ggcACACA---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4027462 121 +  4147112 -----------tccaaaacttgacCAAGTATCAAAAGTCT---------------caattaaa----gtttttgaaagaaagggAATTCG--TTAA------TCGGGGGTAGAAACGA----------------AAGTGATATAAGTGTATGTTC---------CAGT----------------------------------AGAAG--AACACATCGAA
i caePb3.Scfld02_0      C 0 I 73
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=434.000000
s ce10.chrX              5771330 24 + 17718866 TATTTTTGCAAAAATG-TGAAACAA
s cb4.chrX              11101236 25 + 21540570 TACCGTTACAAACCTGATGAGATGA
i cb4.chrX              C 0 I 81
e caePb3.Scfld02_0       4027583 73 +  4147112 I
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=0.000000
s ce10.chrX              5771354 50 + 17718866 AATCCCTAGCGCACCGATAAACATTAGAAAATTTGTAAAAAATAAAAATG
e caePb3.Scfld02_0       4027583 73 +  4147112 I
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e cb4.chrX              11101261 81 + 21540570 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=1091.000000
s ce10.chrX              5771404 38 + 17718866 ATTTCTTAAAA--AAACGAGACAAATCGGATTAGTGAAAA
s caePb3.Scfld02_0       4027656 40 +  4147112 ATTTCTATACACTAAACCAGATGATTCAGACTAGTTACAA
i caePb3.Scfld02_0      I 73 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e cb4.chrX              11101261 81 + 21540570 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-23309.000000
s ce10.chrX              5771442 474 + 17718866  
s cb4.chrX              11101342 436 + 21540570  
i cb4.chrX              I 81 I 104
s caePb3.Scfld02_0       4027696 481 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-541.000000
s ce10.chrX              5771916 59 + 17718866 AATAGTATTATAAAATAGATGTTATTAAAAATGATTAATGGAGTGCAATATTAATAGAG
s caePb3.Scfld02_0       4028177 42 +  4147112 CATAgcatttcag----------atcaaaattaactatcttttctcaaaatt-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e cb4.chrX              11101778 104 + 21540570 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-2985.000000
s ce10.chrX              5771975 76 + 17718866 AAAATGTGGTACTTGGCCTTGGAACCTATTTTCTAGTGTTGCGTCCTTTCCAGAATAGT--AGCAAATA---TTACGTCGA------------
s cb4.chrX              11101882 86 + 21540570 aaaaactggtaCCTAGcttaaaaactttcaatcttc-------atgttttttgaaaaattcaatttttaaagttattccgaatatttcttcaa
i cb4.chrX              I 104 I 55
s caePb3.Scfld02_0       4028219 66 +  4147112 --------gttccTTTCAATGAGAACTCCAGTCCACTG----GACCTTTTTTAAATGAGAAAACTGATA---TTATTCTCA------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-266.000000
s ce10.chrX              5772051 39 + 17718866 CAAGAAATGCCTGCGTGAAAACATAAGCTTTTCATATAA
s caePb3.Scfld02_0       4028285 39 +  4147112 TGAAAAGTATTATCATTGAAAACCGTATCCTTAATTCAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e cb4.chrX              11101968 55 + 21540570 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-3946.000000
s ce10.chrX              5772090  51 + 17718866 -----------------AAATTG----------------------TTTTAATTTA-----------TCTTTAAA---------ACTACGTTCCTTTGAAAACATTTGTTT-
s cb4.chrX              11102023 111 + 21540570 AAATTATTTCGAGGACAAATTTGACAAGTTTTGGTCTATGTATGATTCCTCGTTTACCCCTAAAACTTTTCGAAcgtttttctccaatttttcctgGGAAATGATCTTATC
i cb4.chrX              I 55 C 0
s caePb3.Scfld02_0       4028324  41 +  4147112 -----------------AAtccg----------------------tttctctttt-----------tcttcaaa-------cttctacctttctttga-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeSp111.Scaffold626    870390 516 +  1189296 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=-1005.000000
s ce10.chrX              5772141  6 + 17718866 CGTCTA--------
s cb4.chrX              11102134 14 + 21540570 CGGCTAGCTtggta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    870906  6 +  1189296 cctctt--------
i caeSp111.Scaffold626  I 516 C 0
s caePb3.Scfld02_0       4028365  6 +  4147112 cctcca--------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e caeRem4.Crem_Contig0   2467474 602 -  4500979 I

a score=36227.000000
s ce10.chrX              5772147 111 + 17718866 -TTTTTTCT----TATTTCTTTTTT------CCTA------------ATCC-AAACATTGTCG--GA---AGCAATCAGTGGCCACCCAC------TGCTTGTTATCATATTTGCTTTTTTTATCCGAATGC--T-TTCCGAGCAAACA
s cb4.chrX              11102148 135 + 21540570 -ttttttct----aattccttGTTAAATTTTTCCGCTTATTTCTGTCTGCC-AAAACTCCCAGGAGC---AGCAATCAGTGGCCACTCATTTTGTGTGTCTCTTATCTTGTTTGT-TCTCATATCCGGATTC--ATTT--GAGCAAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2468076 108 -  4500979 -ttttttcg----tttttcttatca------TCCG------------TGCC-AAAGATTGTCT--GC---GGCAATCAGTGGCCACTCAT------TGTCTGTTATGCTATTTGC-TCTCTTATCCGGATGC--A-TT--GAGCAAACA
i caeRem4.Crem_Contig0  I 602 C 0
s caeSp111.Scaffold626    870912 113 +  1189296 ttttcttcattattgtctcttttta------tttg------------tgCC-AACGACTCTTA--TC---TCCAATCAGTGGCCACTCAT------TGTCTGCTATCatatttgc-ttttttatcCGGATGC--G-TT--GAGCAAACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4028371 117 +  4147112 ttttttgca--attttatttttcta------tttg------------tgcCAAAAGGCTTTCA--TCACTCCCAATCAGTGGCCACTCAT------TGTCTGTTATCATATTTGC-TTTCTTATCCGGATGCTAT-TT--GTGCAAACA
i caePb3.Scfld02_0      C 0 I 62
e caeJap4.Scaffold17990    90790 1995 +   357190 I

a score=5199.000000
s ce10.chrX              5772258 64 + 17718866 CCCCGCCCCCTAATCG--------TTTAGGTGTCAAATCATCA----------ATGAGTTTCTTCTGAATGAACAC--GTTCTT
s cb4.chrX              11102283 68 + 21540570 ----GCCTTCCTCCCACCGCCAATCAAAGGTGTCAAATCAACG----------CTGAACATCCCcaaataaaattc--aatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2468184 66 -  4500979 ----ACCATCCGATCA----TAAACGAAGGTGTCAAATCAGAG----------TTAAACATCCACAAATAGAATacgtattttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    871025 76 +  1189296 ----ACCATGGAATCA----GTGATAGAAGTGTCAAATCGACGACATTCTTAATGGAACATCCACAAATAGAATGCACGTTTTC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4028488 62 +  4147112 I
e caeJap4.Scaffold17990    90790 1995 +   357190 I

a score=-3156.000000
s ce10.chrX              5772322 145 + 17718866 ---GCTCAATCTTCTTT------TTTTCGCATGACATCAT-TT-TGTAAGGTTATGATGGATTG------CGGAAA--------------AGAACAGAACGACTTTTCTGTC----GTTTTTCATTTATT-----------------TCTTTTTGT--AGTTTG------------T----TCA----------TTGTAGGCCTTTGTT---------GTTGAGAA----------------------------GCAGAAAA
s cb4.chrX              11102351 181 + 21540570 tctt---gcttttcgCCGGCAATTTTTTCCATGACATCAT-CCATAAAAGGTTGGGATGGATTGGCTTGGAGGAGtatagaa--------aaaaacgaacaagTCTTctgtccttcttcttttcttcatt------tttatgcgCTACCTTTTTGTG-TGTGTG---------CTCTGAGGTCA----------T------CCTTTTTT---------GTGGAAGG----------------------------GCTCAAAA
i cb4.chrX              C 0 I 48
s caeRem4.Crem_Contig0   2468250 183 -  4500979 tcttttcaattttcctt----attttttcaatgacatCAC-CC-TTAAAGGATATGATGGATcggc----agaaaaaaagaag-------gaaaacgaacgaatttatttttcgccgtcagttcttttttcagtagCTCGTTTGCTCCCTCCTTGAA-AGTGTGAAGt----ccttt----tta----------t------tctttttg---------aaaaaaaa----------------------------agatgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    871101 194 +  1189296 --------------------CAATCTTCTCATGACATCAC-CG-TGAAAGGTTATGATGGAT--------GGGAAAGCAG-GGTG-----AAATGGGAACGAAttttttgcc--tctatttttctttgtt------ttttcctgagctctttttgaacaggataaagcataactctc----tca----------t------tttttctcgatagG---GCTGAAAA-GTAGGTATTTTGTGAGACGTTGAACATGCATAAAA
i caeSp111.Scaffold626  C 0 I 61
s caePb3.Scfld02_0       4028550 227 +  4147112 ---AACCGACtttcttc--tgaactttcatATGACATCACTCC-TCAAAGGTTATGATGGATCG------GGAAAAGCAGAAGTGAATGAAAATGGGAACGAATTTTGTGtc-gtcaatttctttttttt------ttctttt----tatttctga--cGGCTCATTCACTACCCAT----TCAAAAAGCACACT------CTTTTTTAAGTAGTCCCACTGAAAATTTAGGTGTTTTGAGGGCCGTCGAGAATGCATAAAA
i caePb3.Scfld02_0      I 62 I 53
e caeJap4.Scaffold17990    90790 1995 +   357190 I

a score=1389.000000
s ce10.chrX              5772467 33 + 17718866 ----ATAGTAATTGTTTT--------GTGAA---ACTTGGACTGAAAA-
s caeRem4.Crem_Contig0   2468433 43 -  4500979 atagaaatgaggTGTTTTGAAGCCTATTGAACATACATGA------AAG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    871356 30 +  1189296 ----AAGGgagttgtttt--------ttgaatcaacgTGA------AA-
i caeSp111.Scaffold626  I 61 C 0
s caePb3.Scfld02_0       4028830 36 +  4147112 ----ATGggacttgtttt--------ttgaatcaacgtgaaaaaagaa-
i caePb3.Scfld02_0      I 53 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I
e cb4.chrX              11102532 48 + 21540570 I

a score=4817.000000
s ce10.chrX              5772500 395 + 17718866  
s cb4.chrX              11102580 435 + 21540570  
i cb4.chrX              I 48 C 0
s caeRem4.Crem_Contig0   2468480 501 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    871386 428 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4028866 423 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    90790 1995 +   357190 I

a score=87254.000000
s ce10.chrX              5772895 182 + 17718866 GGAG-----------------------------------------------------------------------------CCTACATTATTTTGTCGTTTT---TC--G---------AATATTTACATTCTACCTGTCTTCTCCTTTTTTTCCAGTGCACAAACGCGCGCGCGGACG-TAGGGCA-----TTGCAGCAGCGCCTCACTTCA-CAAATATTTGTCCAAGTCCGCAC-TCCCCT-TGATCAAAAACTTTTG-------TTCTTTTTTACACTTCCA--TCC
s cb4.chrX              11103015 251 + 21540570 ACAAATTCATTCTCGCCCTAGTCTCTGTACACACTAGAACATCTGTTTCATAGAATATGGGACTAGCTCTCCCATCGCTCCTCTACACtcatacaat-tttt---tt--------------cacttacATTCTACCTGtcttcccac-atttttcattgCACAA---------CGGACGTTAGGGCAATATTTCGAAGC-GCCTCTCACTTCACCAAATATTTGTCCAAGTCCGCGCTCCCCCT-TTATC-ACaacttttg-------ttcttttttacACTTCCA--TCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2468981 177 -  4500979 AGGAG----------------------------------------------------------------------------TCTACACTCATACATT-TTTT---CCTAG---------AATATTTACATTCTACCtgtcttttcca-atttttcagtgcaCAAAC----GCGCAGACG-TAGGGCA-----TTGCAGC-GCCCCTCACTTCA-CAAATATTTGTCCAAGTCCGCAC-CCCCCT-TGATC-ACaacttttg-------ttcttttttacaCTTCCA--TCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    871814 178 +  1189296 AGAG-----------------------------------------------------------------------------CCTACattatttcact-ttttttccc--G---------AATATTTACATTCTACCtgtcttctcct--tttttcagagcacAGCC--CTCCGCGGACG-TAGGGCA-----TTGCATC-GCCTCTCACTTCA-CAAATATTTGTCCAAGTCCGCGC-CCCCCT-TGATC-ACaacttttg-------ttcttttttacaCTTCTA--TCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4029289 176 +  4147112 AGAG-----------------------------------------------------------------------------CCTAcattatttcact-tttt---cc--g---------aatatttACATTCTACCtgtcttctcct--tttttcagtgcaCATAC----GCGCGGACG-TAGGGCA-----TCACAGC-GCCCCTCATTTCA-CAAATATTTGTCCAAGTCCGCAC-CCCCTTCTGATC-ACaacttttg-------ttcttttttacaCTTCCATTTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990    92785 147 +   357190 GGAG-----------------------------------------------------------------------------CCAAAAACTCTTTGCC-GCTG---CC--GCAGACCCCCAGTGTTTGCATTCTACCTGTCTTC------TTTTTCAG----------------------------------------GC-TCCTCTcactttt-caaatatttgtCCAAGT----GG-CC-----TGATC-ACAACCTttggctcttttttttttcaaaactttca--tcc
i caeJap4.Scaffold17990 I 1995 I 279

a score=26199.000000
s ce10.chrX              5773077  99 + 17718866 ---TGTTGCC----G-TGGTGCGTCTCAGGCCATGTAAAGTCAGTTAC---TT----TCCAATTTTGTCAATC----------------GCCACTTTGATTGATACCTATTT------TC--GTGCCCTTCTGCAAAC
s cb4.chrX              11103266 128 + 21540570 CTGTGTTGCCAGTTG-TTGCGTGTCTCCACCAGTGTTAAGTCAGTTaccttttttaattcaattcTCTTACTCTCGTTTTAGGCAGTCTGCCG-TTGAATTTATACTCTTTTAACAGTTG------TTCTCTGCAG--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2469158 106 -  4500979 ---TGTTGCC----G-TTGCGTG--TCCAACCATGTTAAGTCAGTTAC---TTTTAATTTGATTTCTACAC------------------GCCG-TTCGATTGATACCCTTTTGTCTACTTTCACccttttttgcaaat
i caeRem4.Crem_Contig0  C 0 I 122
s caeSp111.Scaffold626    871992 114 +  1189296 ---TGTTGCC----GTTTGCGTG--TCCGACCATGCTAAGTCAGTTAC---TTTTAAttcgatttctcttcttctttttcttctttgccGCCG-TTCAACTGATACCCTTTTATGACTTT--CCCCTTT---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4029465 110 +  4147112 ---TGTTGCC----G-TTGCGTG--TCCAACCATGTAAAGTCAGTTAC---TTTTaattcgatttc------------ttctcattGCCGCCG-TTCGATTGATACCCTTTTATCAACTC--GTTCTTTTCTGCAGAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    92932 279 +   357190 I

a score=-4771.000000
s ce10.chrX              5773176 20 + 17718866 TTTCCAATCTGTTTGAAAAA----------------
s cb4.chrX              11103394 16 + 21540570 -TTAGAACacgtttgaa-------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    872106 10 +  1189296 ----------TTGTCAAAGT----------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4029575 26 +  4147112 ----------TTGTCAAGTTTGTTCTATTTCAAGAA
i caePb3.Scfld02_0      C 0 I 871
e caeJap4.Scaffold17990    92932 279 +   357190 I
e caeRem4.Crem_Contig0   2469264 122 -  4500979 I

a score=-3116.000000
s ce10.chrX              5773196 71 + 17718866 -----TCTGTGGCCCCAGTAGTGTTCTGTTTTTT-----TCTCAATTAATTCCCTAATTTTATAATTTTCCCCCTCTACCG
s cb4.chrX              11103410 53 + 21540570 ttttttcttagGTTCTG------------TTTCT-----TTTCGAGATCATGCC-ATTACGATAAAACCCC----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    872116 65 +  1189296 -----TCTTGGACATCGG---------GATTTTTGAACGTCTCaatatcttgtt--tttctagaatatcCCTTTTGGCCTG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4029601 871 +  4147112 I
e caeJap4.Scaffold17990    92932 279 +   357190 I
e caeRem4.Crem_Contig0   2469264 122 -  4500979 I

a score=-36256.000000
s ce10.chrX              5773267 253 + 17718866 -----------------------CTAAATTTTGTAATACTTCTCTTGTTAGTACCAA------------------GAATAATTTTTTGAAA---------------ATAAATTATTGGAATGCCCAAATTATTTTTGTTCAATACAATTG-CAAACCACTTCAT-----AAAATTAAATGTAAACTTGGGCGGTCGTTTA------------------AAAGT-----------TTTTTTAAACCTGAAGTTCAA----GCAAAAATTTTAGATGGAAAC---TAC-------ATAAGTTAATTC-------------------ATTAAATACATCTTTCTCCATATACG-TTCTCTC--TTTTATTTATACATGCATAT----
s cb4.chrX              11103463 208 + 21540570 ------------------------TGAAACAATTAGAATC-----------------------------------AGATAATTGCATGGAAT--------------GTCCAGCGTTTTAAAATACACTTTGCATTTAACAAATGTGTTCT-TTAGTAGTTTTAC---------TTGACCTTGT----------TTGTTtc------ttatgaaaaataaaaac-----------attttcaaacgaTGTATTC------TCATTAGAATCGTCGCAAGGT---TTC---------AAATTAATTC---------------------------TCTATTGAAATCAATACc----------tttcattcattca-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2469386 337 -  4500979 -----------------------ctgaattatatGAACTTTCTGTTG--------AGGTTTCTCCTCATTAagagaaattattttctgcaattttctaAAGATTTGGTTCTGCAGATGATAACGAAGTTCAC-CTTGATCCGTATGTTCTCTTACAAATCTCAA-----AACGTCAAACAAGca--------gttgttttgaaaaattaagagaaaCAACAATcctttattcgaatttttctgcGAGAGATTCAAATCTTCAATACTGTTAGCGCCAAATAGGTTCACTCATCGAAAATCAATTCTGGCAAATGacctcttttgtttttttattttttgttttctacacC-TTCACctgttttcatttattca-gCCTACTAGT
i caeRem4.Crem_Contig0  I 122 C 0
s caeSp111.Scaffold626    872181 244 +  1189296 CTCACAAGGGCATCTTTCAATGACCAATTCATTCAAACTATGGTTTA--------AA------------------TGAAGATCATATGGGCCT-------------GGCATGTGTTCCATTATAAATTTCAC-CTTGATCCTCGTGttct-tttgtgtttttaCAAAACAACGTTGAAAGTAC-----------TGCCAC--------------AATGAAATC--------CGATTTTCTCTTGAACACCTTCTAAAGCTCAACA----------AAGGT---TTT-------------TAAATC----------------------------TTCTTCACACGGATACCTTTCTCATTAACTCATTCATCC------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4029601 871 +  4147112 I
e caeJap4.Scaffold17990    92932 279 +   357190 I

a score=-7876.000000
s ce10.chrX              5773520 156 + 17718866 ATTCACTTATTT-----TCCACTCT-------TTCTATTCTTTTACTTATTGCTCTTCCCATCTCCT--------TTTCGCTTCACCTATTCCATTCGTTTTGAATAGATGATCTCCCCCGCCTCTACGGTTGTTATGCGATGTCAACGTTTTCGAAACAGAAACATTCATAGCAA
s cb4.chrX              11103671  95 + 21540570 -ttcgtTCATGT--------GTTGG-------TTTTTCATTC---ATTGCTTCT---AGAGGTTTCT--------CTATtct----catttcca-------aaaaaa-----------------tt-c-------------------tatcTTCAAAAC---AGAAACCATGGCAA
i cb4.chrX              C 0 I 32
s caeRem4.Crem_Contig0   2469723 123 -  4500979 GCTCTCTCATCT-------cgttat-------tttttttctc---ctcgtttct--------tttttgttgttaactattat----tttttctg-------gaaaaggaTGCTTT----CACCTTT-CCGTTGTTATGC--T-----TTTCTTCAAA-----TGATAACATAGCAa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    872425 119 +  1189296 --------atttcgaattccattct-------ttcaatactc---ctctattcttcta----ttctt--------ttattcttttccatttc----------------gtGCTCT-TCCCATTTCT-CCGTTGTTATGTATT-----CCTTTTGAAAGC----ACAAACATAGCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4030472 147 +  4147112 attcattcatttccaattccattctcctgctcttctcttttc---cttttctcttatactgcttctc--------ctattcttcacctcttcct-----------AGGATGCTCT-CCTCACCTTC-TGGTTGTTATGTTGT-----CGTTTCCCAACCAGAAACATACATAGCAA
i caePb3.Scfld02_0      I 871 C 0
e caeJap4.Scaffold17990    92932 279 +   357190 I

a score=-3581.000000
s ce10.chrX              5773676 34 + 17718866 CCCACGAGCACAACCACCAAAACATAACCATCTA
s caeRem4.Crem_Contig0   2469846  4 -  4500979 ------------------------------ccaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    872544 11 +  1189296 ----------------CCGGAAC-------CTTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4030619 12 +  4147112 ----------------CCGGAAC------TCCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    92932 279 +   357190 I
e cb4.chrX              11103766 32 + 21540570 I

a score=1775.000000
s ce10.chrX              5773710 16 + 17718866 AAAATAAAAATATTGC
s caeRem4.Crem_Contig0   2469850 16 -  4500979 gaaacaaaaacaagaa
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    872555 14 +  1189296 CCAATAAAAgcatt--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4030631 16 +  4147112 tcaataaaaacattga
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990    93211 16 +   357190 AAAACAACACCGCCGT
i caeJap4.Scaffold17990 I 279 C 0
e cb4.chrX              11103766 32 + 21540570 I

a score=57607.000000
s ce10.chrX              5773726 103 + 17718866 CTTTTTCCAAGAACGCGAAGACCTATTCCTTGT----GATGATGTCTTGCCGGAACGTTTGAAAAAC--TGATGCCGTCCAGTTTTGGTACACACAAAGCCGGTTAGTT
s cb4.chrX              11103798 106 + 21540570 ctt-tttccaaaacaaaacaaaaagctcttttttcagaatggtgCCGCGCTGGaacaactgaaaatt--cgatggCGTCGCGTTTCAGTACCCACAAAGCCggttagtt
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   2469874  82 -  4500979 -------------------------ttttttattcagaatggTGTCTTGCTGGAacgtctgaaaaat--caatgtcGTCGCATTTCGGTACCCACAAAGccggttagtt
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    872569  99 +  1189296 ----tttctggaaaacaaaaatat----gtttttcagGATGGTATCTTGCTGCATCGTCTAGAACAA--CGATGTCGTCGCATTTTGGTACCCACAAAGCCGGTTAGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4030653 108 +  4147112 CCTGCTTCTAGAAAAACacaacatcttctttttttagaatgGTGCCGTGCTGGAACGTCTGAAAGAA-TCAATGTCGTCGCGTTTTGGTAACCACAAAGCCGGTTAGTT
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17990    93227  99 +   357190 CCTATTCTGGCAACGAAG----------GCTGTTTAAGATGGTGTCAGGCAGGAACGTCTGAAAAACATCAATGTCGTCCCGATTCAGCACACACAAAGCTGGTTAGTT
i caeJap4.Scaffold17990 C 0 n 0

a score=-1958.000000
s ce10.chrX              5773829 14 + 17718866 GA-------ATTTTTGTTTAT
s cb4.chrX              11103904 11 + 21540570 gt-------tttttttat---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2469956 11 -  4500979 tt-------ttttctttt---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    872668 14 +  1189296 TG-------ATTCTTGTTCAT
i caeSp111.Scaffold626  C 0 I 969
s caePb3.Scfld02_0       4030761 21 +  4147112 TTtatcgtcgtttttttttat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990    93326  0 +   357190 I

a score=-1074.000000
s ce10.chrX              5773843 3 + 17718866 GTT-
s cb4.chrX              11103915 3 + 21540570 -ata
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2469967 2 -  4500979 -at-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4030782 3 +  4147112 gtt-
i caePb3.Scfld02_0      C 0 I 2472
e caeJap4.Scaffold17990    93326 0 +   357190 I
e caeSp111.Scaffold626    872682 969 +  1189296 I

a score=-1273.000000
s ce10.chrX              5773846  9 + 17718866 GTTGTTGCT-------------
s cb4.chrX              11103918  9 + 21540570 tttgatACT-------------
i cb4.chrX              C 0 I 1963
s caeRem4.Crem_Contig0   2469969 22 -  4500979 tttcatatgttggtcggtcgct
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4030785 2472 +  4147112 I
e caeJap4.Scaffold17990    93326  0 +   357190 I
e caeSp111.Scaffold626    872682 969 +  1189296 I

a score=251.000000
s ce10.chrX              5773855 4 + 17718866 GTTC
s caeRem4.Crem_Contig0   2469991 4 -  4500979 attc
i caeRem4.Crem_Contig0  C 0 I 250
e caePb3.Scfld02_0       4030785 2472 +  4147112 I
e caeJap4.Scaffold17990    93326 0 +   357190 I
e cb4.chrX              11103927 1963 + 21540570 I
e caeSp111.Scaffold626    872682 969 +  1189296 I

a score=0.000000
s ce10.chrX              5773859 165 + 17718866 CAGTTGTGATAGTCAGAAAACATTTAACATTTCCATATATTGATACTAAACAGATATTTTGTGTCTGAAACTTTTGAGAAAAATGTGATCCTACATATAATCCTAAATAACAAAAAAGAACAAACATACGAAACGGTTTAAAGCACTTCCTTTGATAGTGTCCTA
e caePb3.Scfld02_0       4030785 2472 +  4147112 I
e caeJap4.Scaffold17990    93326   0 +   357190 I
e cb4.chrX              11103927 1963 + 21540570 I
e caeSp111.Scaffold626    872682 969 +  1189296 I
e caeRem4.Crem_Contig0   2469995 250 -  4500979 I

a score=2533.000000
s ce10.chrX              5774024 225 + 17718866 TCAATTTTTCAAAAATTCTTATCAAAA----ATGCCTCGTTTGTCGTTTCCTTTACTCCGACAAAGAAACTTTCCAGGTTCGTAGATTTCTTGTTTTCGCTGGTTAGATTTTGCAAAAACCACAAAAACATAATTGTGCTTAGAAAACGACTAATGCAGCTAATTTTCTGTTCTGCAGAAAACAC-ACAAATCGTGATAGATAAAAAAAGAAAATGGCAATTAGAACGCA
s caeRem4.Crem_Contig0   2470245 194 -  4500979 TTATTCTCTTAAAAGTTTTCACAAAGTCACTATGTTTTGTCCAGTGCTTCCTATTTTTCCACAACGAGATTTTCCAGGTTT---------------------GTTAGTtgtaagagaaa----aaaaacac-------ttcaaaacttaaataatgtagctaatcaacaa----gcaaaaaaagcgaaaaagcATACTGAACGATAGAGGCAAACGCCAATTTGCATGTA
i caeRem4.Crem_Contig0  I 250 I 843
e caePb3.Scfld02_0       4030785 2472 +  4147112 I
e caeJap4.Scaffold17990    93326   0 +   357190 I
e cb4.chrX              11103927 1963 + 21540570 I
e caeSp111.Scaffold626    872682 969 +  1189296 I

a score=0.000000
s ce10.chrX              5774249 1527 + 17718866  
e caePb3.Scfld02_0       4030785 2472 +  4147112 I
e caeJap4.Scaffold17990    93326    0 +   357190 I
e cb4.chrX              11103927 1963 + 21540570 I
e caeSp111.Scaffold626    872682  969 +  1189296 I
e caeRem4.Crem_Contig0   2470439  843 -  4500979 I

a score=191.000000
s ce10.chrX              5775776 2 + 17718866 TC
s caePb3.Scfld02_0       4033257 2 +  4147112 tc
i caePb3.Scfld02_0      I 2472 C 0
e caeJap4.Scaffold17990    93326 0 +   357190 I
e cb4.chrX              11103927 1963 + 21540570 I
e caeSp111.Scaffold626    872682 969 +  1189296 I
e caeRem4.Crem_Contig0   2470439 843 -  4500979 I

a score=2723.000000
s ce10.chrX              5775778 27 + 17718866 CTCATGTAACACAAATAGGTCTCCGT-G
s cb4.chrX              11105890 26 + 21540570 CTCATCCAAAGATAGTAGGTCTCCGG--
i cb4.chrX              I 1963 C 0
s caeRem4.Crem_Contig0   2471282 26 -  4500979 CTCCTCCAAAACGGGTAGATCTCCGA--
i caeRem4.Crem_Contig0  I 843 C 0
s caePb3.Scfld02_0       4033259 26 +  4147112 -ttcatcagTACGAGTAGATCTACGGG-
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990    93326  0 +   357190 I
e caeSp111.Scaffold626    872682 969 +  1189296 I

a score=22044.000000
s ce10.chrX              5775805 119 + 17718866 GGCAACATTTAGCCCCTCTCGCTGCCATCTGCTGTCGACGTCTCGAATCTCGACGTGTCTCTCCGT-----------CCCGTTGTCCATCCATATG---TCCTC-CTTTTCAATGTGTCTCCCTT--TTCCTAAAA
s cb4.chrX              11105916 118 + 21540570 GGTGACATTTGGTCCTCATCTCCACCATCTGTCGTCTAGATCT----------CCCCTCTCCCTCTTCTGCCCTACATCTCTTCTTTATCCGCGTG---TCTACAACGCACAACGTGGCCCTCGT---CACCAA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2471308 111 -  4500979 GACAACATTTGGCCCTTTTCGC--CCATCTGCTGTGTAGATCT----------TCTCAATGTTTCT-----------CCCCTTGTTTATCCATATGTCCTCCTCCTCGCACAACGTGTCTCCCGTCCACACCAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    873651 104 +  1189296 GGCAACATTTGGTCCTTCTCA---CCATCTGTCGTATAGATCT----------CCTCCCGTTCTCT-----------TCTTGTGTTTATCCATACG---TCCTC-ACAACCAACGTGTCCCCTTT--GTCGTTA--
i caeSp111.Scaffold626  I 969 C 0
s caePb3.Scfld02_0       4033286 106 +  4147112 GGGAATGTTGAGTCCTTTTTG---CCATCTGCTGTGTAGatctt--------ccttctctctttcc-----------ctctctgTTTATCCATATG---TCCTC-TCGTTAAACGTGTCCACTCA--ACGGCAA--
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17990    93326   0 +   357190 I

a score=108448.000000
s ce10.chrX              5775924 398 + 17718866 AAAAACATCGACCCAGTGTG---C-TGCTGGCGCATTTCTCGATC-TGCGCTT-------------GGTGTTTTATTTCT------GTTTTTTTATTTTGT----------CAGAAAAAAATG-CCGCGGGTTTTGAATTTTAATGCACAGTTTACCG---CGTTTTGTATCACTTTTTTGTTGAACC-------AATTTTAATCAT-GAAATTTATTAACCAAAAAGATAAAATTTGCTTTTATTGCGGCACAGCACGC------AACATAGCGTAGCT-GATAACA------AATTTTTAACAATTAACTTTCATTTTTAT------------------TGTAATCAA--CAATGAATTTCATTTCAGCAAAGCTCGTCTTCGTGCCATGGTTATGGAATAAAATGGCTTTCATCAAGCGGAAAACAGTCAAGTTTTCAGTGGATTTACAAGTGAGTTAAGATTTGtttttttta
s cb4.chrX              11106034 358 + 21540570 ------ATCGACCCAAC-AA---CGCGTTGACGCGTTTTACG----GGCGGCC-------------atcctttttctgtt------tttttatt---c---------------atgaAATATGCCCgcgctttttgaatttc-ctgc------cGCTG---GTTGCgctatataattttt-tctcacctgaaaaatatttttatcacTGAAACTTTTCGCT-----------GTTGTGCATTTATTATGCC----CACGC------GACAAAGCGAAGTTAGATAAC-------AACTCAACACAAATTTC-CCGCTCATTA---------------------TCAACAAAATAATGCCTTCTTTTCCAGCAAAGCTCGTCCTCGTACCATGGTTATGGAATAAAATGGCATTTATCAAGAGGAAAACAGTCAAGTTCTCAGTGGACCTTCAGGTAAGTC-------TTTTTCTCTG
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2471419 358 -  4500979 ------ATCGACCCAACGGG---Cgcattgacgcgtttttcgatataagagtg-------------attttttctgtttt------tttttctt---ctgt------------aaaaaatatg-CCGCGCTATTTGAATTT---------------TG---TATGCTCTCACTGACTTTT-GCTTATC--------ATTTTTGTCAC-GAAACATGTAGGC--ACGcaagaagttttgattttattgaGCAGTTGCACGC------GACAAAGTGTTGCTTGATAAC-------AATTC-ACTCAATTTACTTCACTTATTA---------------------TTGTTAA---AATGccttctttttcagcaaagCTCGTCTTCGTGCCATGGTTATGGAATAAAATGGCATTTATCAAACGGAAAACGGTCAAATTCTCAGTGGATCTTCAAGTGAGtt-------gttttgttca
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    873755 361 +  1189296 ------AACCACCCCCCGAACAGAATGCTGACGCGTTTCTCG----TGCACAC-------------GGTTtttctcccct------ttttcttggttttgt------------ACAAA-TATG-Ccgcgttttttgaatt----------------------------cagctttTCGTT-TCCTATC-------AATGTTTATCAA-GAAATGTGAAAGC--ACATGAATAGTTTTCGTTTTATTGAGCGGTCGCGTGC------GGCAAAGTATAGTTTGATAAC-------GATTTTGGCCATTTACCCCCGATTATTAT-------------------ATTATTAA--CAATGCCTTCTCTTACAGCAAAGCTCGTCTTCGTGCCATGGTTATGGAATAAAATGGCATTTATCAAACGAAAAACAGTAAAGTTCTCGGTAGACCTTCAAGTGAGTTGGTATatgtgtttttga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4033392 350 +  4147112 ------ATCGACCCAGTAAA---AACGTTGGCGCGTTTTTCG----TGCGATc-------------cgtattttgttttt------tttttctg-------------------acata--ACC-CCgcgttttttaaattt---------------t----catacGGTATCACTATATTATTGTATC-------AATATTTACCAA-GAAATGTATAGGC--ACAATagaagtttcaattttattgagcGGTTACATGC------GACAAAGTGTAGTTTGATAAC-------AATTTCGCTCATTTG-CCCcgattattat--------------------ttttcca--caATGCCTTCCCTTTCAGCAAAGCTCGTCTTCGTACCATGGTTATGGAATAAAATGGCATTTATCAAAAGGAAAACAGTCAAATTCTCAGTGGAtcttcaagtgagtt--------ttttattca
i caePb3.Scfld02_0      C 0 I 37
s caeJap4.Scaffold17990   281620 420 -   357190 AAAAGCGTCAACAC---------ACTGCTGGCGCATATCTCG----TGCAGTCCCACCActttataactttttttttgtttagtggttttttttttcctatttataTACAACAATGAGAAACG-CCGcgcttttcaaattt---------------tgagccCCCTGAtaagctattttt-tttaatg------aaattgtTATCAA-AATATAAATGAGG--CAACAAACAATATT--CTTTGGTTTGGAGTTTCACGCTCTGAATAAATAGCATTGTTTGATAAAACAATCTAATTCTCCGCGAGTTATTTAAATAGATATCAAATTTTCTGTTGAATACTTTATTAA--TGAAATTCGCTCTTCCAGCAAAACTCGTGTTTGTGCCATGGTTATGGAATAAGATGGCTTTCATCAAACGGAAAACAGTAAAGTTTTCTGTCGATCTACAAGTGGGTT--------TTT------
i caeJap4.Scaffold17990 I 19567 C 0

a score=-12274.000000
s ce10.chrX              5776322 30 + 17718866 aatataat------------------gtaaactttatataatttatat
s cb4.chrX              11106393  7 + 21540570 ----------------------------AATC-------------Gac
i cb4.chrX              I 1 I 4
s caeRem4.Crem_Contig0   2471783 21 -  4500979 gataaaa---------------------aatctctcaa------aaac
i caeRem4.Crem_Contig0  I 6 I 5
s caeSp111.Scaffold626    874116 10 +  1189296 ---atga---------------------aaac--------------gc
i caeSp111.Scaffold626  C 0 I 2
s caeJap4.Scaffold17990   282040 30 -   357190 ATTATGATACATAGATTAAGATATTaataa------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4033742 37 +  4147112 I

a score=95503.000000
s ce10.chrX              5776352 136 + 17718866 aaattaatttataaaattttCAGGTATGTCAACTATCAGATGTTCCACTAGTGAATGCCACTGTTTTTGGAAAAATGCGGTTACTAGATGGAGGATCGTTTGAAGAAGCTACGGAACGAGTTGAAGTAGGTTTTTT---
s cb4.chrX              11106404 133 + 21540570 aaatcaatttttcg---ttcCAGGTATGCCACATTTCCGATGTTCCACTGGTGAACGCTACAATATTCGGAAAACTACGTTTGCTGGATGGGGGTTCCTTTGAAGAGTCGACAGAACGGGTTGAGGTAGGGTTTTT---
i cb4.chrX              I 4 I 52
s caeRem4.Crem_Contig0   2471809 133 -  4500979 aaagctATAATTTC---TTTTAGGTATGTCATTTATCAGATGTTCCACTTGTGAATGCAACAGTATTCGGAAAGATGAGATTGCTCGACGGAGGTTCATTTGAAGAAGCTACAGAAAGGGTTGAAGTGAGTATATT---
i caeRem4.Crem_Contig0  I 5 I 49
s caeSp111.Scaffold626    874128 119 +  1189296 -----------------TTTCAGGTATGCCACTTATCAGATGTTCCACTTGTCAACGCCACAGTGTTTGGCAAGATGAGATTATTAGATGGAGGATCATTTGAAGAAGCTACAGAACGAGtagaagtgagttttct---
i caeSp111.Scaffold626  I 2 I 22
s caePb3.Scfld02_0       4033779 134 +  4147112 -aaacaagtttttaca-TTTCAGGTATGTCATTTATCAGATGTTCCTCTCGTCAATGCCACAGTATTCGGCAAAATGAGGTTGCTGGATGGAGGATCTTTTGAAGAAGCCACAGAACGGGTCgaagtgagtttatt---
i caePb3.Scfld02_0      I 37 I 2
s caeJap4.Scaffold17990   282070 132 -   357190 aaaacgtttt-------ttgcaGTTATGCCAACTTTCCGATGTTCCCTTGGTGAATGCCACGGTGTTTGGCAAGATGAGACTTCTAGACGGCGGATCTTTTGAAGAGGCGACGGAAAGAGTTGAGGTGTGTGGGTTTAT
i caeJap4.Scaffold17990 C 0 C 0

a score=-244.000000
s ce10.chrX              5776488 9 + 17718866 ATTTAAAAA
s caePb3.Scfld02_0       4033915 9 +  4147112 gttgaaaaa
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   282202 3 -   357190 ATT------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11106537 52 + 21540570 I
e caeSp111.Scaffold626    874247 22 +  1189296 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=-1836.000000
s ce10.chrX              5776497 292 + 17718866 TTCACTCATTCATTAAATCAGGAGTATCCGATAAAGATTTGTATTTTATTATATTTCAAATGGTAGAAAAATCGG------GAtttgta----acgagactactcaaacgttactcgaaaatttcattatcgcaattcaaaatttccaacactatctaattttagctaaaatctctatttttGTCAACATCTGAGTCCCAGCGGTAAAGAATACTATTAC--GAAATAAAACATATCTTCGGTCGCTGTGACACGAAAAAAATG----------------GTCAAAATT---------------------------------AGAGTTTTAGCTAAAATTCGATTTTAAACAT
s caeJap4.Scaffold17990   282205 287 -   357190 -------ATTTACGAAAtct-----------taaaga-------------------aaaataacagaaagTCCGGCGCCATAATTtgttcgctgcgagacctttatgaattt---------tttttttcacgcgcctttaaatt--------------gttttgatta---tttttgaatttctttacttttaaagctcaa---taataaatactttttCTGGAAagttgacattttttaaatgcgaatgattcaaaaaatatgaaaatcgactgaaaacgTTGAAATTCCGCATTTTTTGTAGTAAATTTATAGAAAGTGAagaattttatggaaaattcTACAAATaagac
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4033924   0 +  4147112 C
e cb4.chrX              11106537  52 + 21540570 I
e caeSp111.Scaffold626    874247  22 +  1189296 I
e caeRem4.Crem_Contig0   2471942  49 -  4500979 I

a score=-275.000000
s ce10.chrX              5776789 24 + 17718866 CCACAAAAAATCGAGAAAGGTTCT-----------
s caePb3.Scfld02_0       4033924 24 +  4147112 ctatagaaaatcaagaaaatttct-----------
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17990   282492 34 -   357190 -ggaaaaaaatttgccgaATGTATAGTAGTTGTTA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11106537 52 + 21540570 I
e caeSp111.Scaffold626    874247 22 +  1189296 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=493.000000
s ce10.chrX              5776813 8 + 17718866 GTGAAGTT
s caeJap4.Scaffold17990   282526 8 -   357190 ATGAAATT
i caeJap4.Scaffold17990 C 0 I 64
e caePb3.Scfld02_0       4033948 33 +  4147112 I
e cb4.chrX              11106537 52 + 21540570 I
e caeSp111.Scaffold626    874247 22 +  1189296 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=0.000000
s ce10.chrX              5776821 35 + 17718866 TTGTTGTGTTATTTACGTCCTATTTGAGTGTAATA
e caePb3.Scfld02_0       4033948 33 +  4147112 I
e caeJap4.Scaffold17990   282534 64 -   357190 I
e cb4.chrX              11106537 52 + 21540570 I
e caeSp111.Scaffold626    874247 22 +  1189296 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=235.000000
s ce10.chrX              5776856 52 + 17718866 AGATCAAAATGATT---TATCG-GTTACTTCTTTTTTTTTA-AATAGCCATAGTGAA
s caeJap4.Scaffold17990   282598 57 -   357190 AGAGAAAAATGCTTCTTTATCGagttatttattgattttcgcgACTGACAGTTCGAC
i caeJap4.Scaffold17990 I 64 C 0
e caePb3.Scfld02_0       4033948 33 +  4147112 I
e cb4.chrX              11106537 52 + 21540570 I
e caeSp111.Scaffold626    874247 22 +  1189296 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=-679.000000
s ce10.chrX              5776908 11 + 17718866 AATTTATTTAA---
s caeSp111.Scaffold626    874269 11 +  1189296 AATGAATTCCT---
i caeSp111.Scaffold626  I 22 C 0
s caeJap4.Scaffold17990   282655  9 -   357190 -----ATTTCAATT
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4033948 33 +  4147112 I
e cb4.chrX              11106537 52 + 21540570 I
e caeRem4.Crem_Contig0   2471942 49 -  4500979 I

a score=43706.000000
s ce10.chrX              5776919 222 + 17718866 TTCAGGTGAAAAACCATAGCGCCTCATTCAACACACGATTTGTATTCTGCTGTCGGATTCCATGTGATCAAACTTCGGGAACACTGGAAAAGTGTCTGTGCCGAGTTTCTATAAGAAAAGTAAG--------GAGAATTTGGAAATAAATTG------------------------------------GGGTTACTAAAATATACTCACAATA-------TGaaataa---tgttt--------------atttaaa----aatacaaattttca--------------tttaaaaaaaCAACATTCT
s cb4.chrX              11106589 245 + 21540570 ttcaggtgaaaaaCCACAGTGCCTCGTTCAATACACGATTCGTCTTTTGTTGTCGAATTCCTTGCGATCAAAATTCTGGGACACTGGAAAAGTGTCTGTGTAGAGTATCCGTTAGAAAGGTGAGAACgaatgaaaaatcgatgagACCACTGTGTAACAATGAAAGTCGGGCGGTAGTTCCAACGTGTAACTAACTGAAA--------CAATT-------AACAATAA----------------------CAAgaaaggctgaaaaa-----------------------aaacagaga---aagaca
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   2471991 248 -  4500979 TTCAGGTCAAAAATCACAGTGCCTCGTTCAACACACGTTTCGTTTTTTGCTGCCGGATTCCATGTGATCAGAACTCAGGGACACTGGAAAAGTGTTTGTGTCGAGTGTCAATCAGGAAGGTGAGCAC-----AATAACTGATTATCAAATGATGCGGGAATGA------------------TATGAATGATTTGTTGCAA-------TCTATA-------AGCAACAA----GTTT--------------CTTGAAATgtcaaccaaattttttatttgttgtt-----cAAACCGAAATCCCTaact
i caeRem4.Crem_Contig0  I 49 C 0
s caeSp111.Scaffold626    874280 239 +  1189296 TTCAGGTTAAAAACCACAGTGCTTCATTCAACACCCGTTTTGTATTCTGCTGCAGAATTCCATGCGATCAGAACAATGGGACACTGGAAAAGTGTTTGTGTCGAGTTTCAATTAGAAAGGTAAT------TAAAAAGCCTTCAATTCATCTAAAGAACTata--------------------------aaatctttgaaa-------aaagtcttGCTTGAACATAAA--TCATTCAATGGT--------GTTGA----TCAACACAAACATT----------------TTCATGAAGACCAACCGCA
i caeSp111.Scaffold626  C 0 I 50
s caePb3.Scfld02_0       4033981 278 +  4147112 ttcaggtcaaaaaccATAGTGCTTCATTCAACACACGATTCGTATTTTGTTGTCGGATACCATGCGATCAAAACTCCGGGACACTAGAAAAGTGTTTATGCCGAGTATCTATAAGAAAGGTGAGCGT-CATGAATAACAGT-ATCTTATC---AGGAATATGT-----------------CACTTGACAAATGTTGGAAA-GCACACAAAGTT-------AACAGAAACCTCGTTCTGTGGGtcacagaaattcaaaacgcaatagaaaaattggtggattctttgaaattttcgaaaaacaaaaact
i caePb3.Scfld02_0      I 33 I 3
s caeJap4.Scaffold17990   282664 155 -   357190 TCCAGGTAAAAAACCACAGCGCATCGTTCAACGCCCGTTTCGTGTTCTGCTGTCGGATTCCATGCGATCAGAATTCTGGAACTCTCGAAAAATGCCTCTGTCGAGTATCCATACGAAAAGTTtgt-------gaaaattgagaaaaaattcatGTAAA-----------------------------------GTTG---------------------------------------------------------------------------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0

a score=-7271.000000
s ce10.chrX              5777141 36 + 17718866 AAACTTATTCCCCATTTATCTTCAACTTTTATCCCA
s cb4.chrX              11106834  2 + 21540570 ----------------------------------ga
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2472239  2 -  4500979 ----------------------------------aa
i caeRem4.Crem_Contig0  C 0 I 6
s caePb3.Scfld02_0       4034262 28 +  4147112 aaatAC--------TTCATATTACATAATGATTCAA
i caePb3.Scfld02_0      I 3 I 10
s caeJap4.Scaffold17990   282819  1 -   357190 -----------------------------------A
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    874519 50 +  1189296 I

a score=200453.000000
s ce10.chrX              5777177 211 + 17718866 TTTTCAGGAACAAAAAGGAGGAAAATCGTATTACAAGCTCGGTTTTGTCGATATCAACCTCTCCGAATATGCAGCTTCCGGTGTTGAAGGAATCTCGAGGACCTATCTTTTAAACGGCTACACTAGCAATCAAAGATTGGATAACTCCAAAGTGTGCATCAAAGTTGCAATGACACATCAAAGTGCAGACCCATTCTTCAGAGTGTATGTT
s cb4.chrX              11106840 211 + 21540570 tttataggAACAAAAGGGTGGAAAATCATTCTACAAACTCGGTTTCATCGATATAAACCTGTCCGAGTTTGCTGCGTCCGGCATCGAAGGAATGTCAAGACAATATCTGCTCAGTGGATACACCACTAATCAGAGACTAGATAATTCGAAAGTGTTTATCAAAATTGCAATGGCACATCAGAGTGCTGATCCTTTCTTCCGAGTGTAAGTT
i cb4.chrX              I 4 I 272
s caeRem4.Crem_Contig0   2472247 211 -  4500979 ttttcaggagCAAAAAGGCGGAAAGTCGTTTTACAAACTCGGATTCGTGGATATCAACCTTTCCGAATATGCGGCTTCTGGTGTCGAAGGAATGTCAAGAACCTATCTTCTCAATGGATACACCAGTAATCAACGGCTGGATAATTCAAAAGTGTGCATCAAGATTGCGATGGCACATCAGAGCGCTGATCCTTTTTTCAGAGTGTGAGTT
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    874569 211 +  1189296 ttttcaggagCAAAAAGGCGGTAAATCGTTCTATAAACTCGGTTTCGTCGATATAAACCTCTCGGAATACGCCGCATCTGGTATTGAAGGAATGTCGAGGACCTATCTACTGAATGGATATACCAGTAATCAGCGACTGGACAATTCAAAAGTATGCATCAAAATTGCAATGTCCCACCAAAGTGCTGACCCTTTCTTCCGAGTGtaagta
i caeSp111.Scaffold626  I 50 I 2
s caePb3.Scfld02_0       4034300 211 +  4147112 TTTTCAGgaacaaaaaggaggaaaatcATTCTACAAACTCGGATTCGTCGACATTAACCTCTCGGAATATGCTGCTTCAGGTGTTGAAGGAATGTCCAGAACCTATCTTCTCAATGGATACACCAGTAATCAACGGCTGGACAATTCAAAAGTGTGCATCAAGATTGCCATGGCTCATCAAAGTGCTGATCCTTTCTTCAGAGTGTAAGTA
i caePb3.Scfld02_0      I 10 I 2
s caeJap4.Scaffold17990   282820 211 -   357190 TTTTTAGGAACAAAAAGGCGGAAAATCATTTTACAAGCTCGGCTTTGTCGACATCAATCTTTCCGAGTTCGCCGCATCCGGAATCGAGGGATTTTCAAGAACTTACCTGTTAAATGGCTACACAAGCACACAAAGACTGGATAACTCGAAAGTTCTGGTCAAAATTGCAATGTCTCATCAAAGCGCTGATCCTTTCTTTCGAGTGTGagtt
i caeJap4.Scaffold17990 C 0 I 812

a score=-6703.000000
s ce10.chrX              5777388 31 + 17718866 CACATATAATTTTCCGTTTAATGAAC-ATGAT--------
s caeRem4.Crem_Contig0   2472458 32 -  4500979 ----TCAAAT----CCGACAACGTTTGAGTCTGAGCTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    874782 33 +  1189296 tttttaaaattatacTGAGAGTGCCC-AATCTGC------
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4034513 33 +  4147112 TCAAGTTATTTGTATAAATAACCCAC-AATTTGT------
i caePb3.Scfld02_0      I 2 C 0
e caeJap4.Scaffold17990   283031 812 -   357190 I
e cb4.chrX              11107051 272 + 21540570 I

a score=925.000000
s ce10.chrX              5777419 3 + 17718866 TAC
s cb4.chrX              11107323 3 + 21540570 TGT
i cb4.chrX              I 272 C 0
s caeRem4.Crem_Contig0   2472490 3 -  4500979 TAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    874815 3 +  1189296 TTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4034546 3 +  4147112 TGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   283031 812 -   357190 I

a score=87978.000000
s ce10.chrX              5777422 119 + 17718866 TTTAGGCCTCGCCTGTCAACGTTCGGTCCACGACAAGATGGAGCTATTGATCAAGATGGTTTTCGAGC---AGACGATGAAACTGATTCCGAAGAAGGAACATCGTCTCATCCGAAGCTTTC
s cb4.chrX              11107326 116 + 21540570 TTCAGACCACGACTATCAACATTTGGCCCTCGCGAAGATGGGATGATCG---AGGATGGATTCCGAGC---TGACGATGACACAGACTCAGAAGAAGGAACATCGTCACACCCCAAGCCGTC
i cb4.chrX              C 0 I 71
s caeRem4.Crem_Contig0   2472493 119 -  4500979 TTCAGACCTCGACTATCAAACTTTGGTCCACGGGAAGATGGTGCAATTGATCAGGATGGATTCAGAGC---CGACGATGAAACAGATTCAGAGGAAGGAACGTCATCCCATCCAAAGCCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    874818 119 +  1189296 TTCAGTCCTCGCCTATCAACGTTTGGACCTCGTGAAGTTGGAGCTATCGACCAGGATGGTTTTCGAGC---GGATGATGAaacagattcagaagaaggaaCGTCGTCGCATGCCAAACCGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4034549 119 +  4147112 TTCAGTCCGAGATTATCAACATTTGGGCCACGAGAAATTGGAGGAATCGATCCGGATGGCTTCAGAGC---AGATGATGATACAGACTCTGAGGAAGGAACATCGTCATATCCGAAACCATC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   283843 122 -   357190 TTTAGACCACGCCTCTCAACATTCGGCAACCGGGAAGACGGAGCATTCGACCAGGAACGATTTCGCGCTCTCGACGATGATACAGAATCAGAAGAGGGTTCCTCGTGCAATCCGAAACAGTC
i caeJap4.Scaffold17990 I 812 C 0

a score=3189.000000
s ce10.chrX              5777541 19 + 17718866 CAATGTAGATGTTCTAGGT
s caeRem4.Crem_Contig0   2472612 19 -  4500979 GATGATCGAAGCTCCAGGt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    874937 19 +  1189296 TGTGATAGAAGCTCCAGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4034668 17 +  4147112 TATTATAGAAGCTCCAA--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   283965 19 -   357190 TACCGCCGATCAGCCAggt
i caeJap4.Scaffold17990 C 0 I 34
e cb4.chrX              11107442 71 + 21540570 I

a score=443.000000
s ce10.chrX              5777560 6 + 17718866 AATTAT
s caeRem4.Crem_Contig0   2472631 6 -  4500979 aatcat
i caeRem4.Crem_Contig0  C 0 I 107
s caeSp111.Scaffold626    874956 6 +  1189296 GAGAAT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4034685 0 +  4147112 C
e caeJap4.Scaffold17990   283984 34 -   357190 I
e cb4.chrX              11107442 71 + 21540570 I

a score=300.000000
s ce10.chrX              5777566 14 + 17718866 TTCGAGATTCGTGA
s caeSp111.Scaffold626    874962 14 +  1189296 ATCGacgtttggaa
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4034685  0 +  4147112 C
e caeJap4.Scaffold17990   283984 34 -   357190 I
e cb4.chrX              11107442 71 + 21540570 I
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=-4519.000000
s ce10.chrX              5777580 306 + 17718866 ATCGATGTACTCTAAGGTTATTTCTATTTTTGCTTAATGCAGGAGCTGTAGATGTGAGGAGTTCACGTAAAACTGAAAACACTCTCTATTTCACTTAAAAATACATGAGTATTCCGTTAGCAGTTGCAAAAAGCTTTTCATATCATTGCAGTCTGTTAAAATTATATATGTCTGAAAATACTATTAAATTAAAGAAAACAAATAAATTGGCAACTGACGCTTAAAACGTTAACAATTGACTCCCGCGGAAGTTTGAAATTATCTCCTCAAACTTAATACATTTTTACTTGTTTTTATGTTATAAAT
s caePb3.Scfld02_0       4034685 108 +  4147112 ------------------------------------------------------TGAGAAATA--------------------------------TAAACATAGATGG------------------------------CAGATCTTTG-------------------------AAAGGTACTg--------------acaaaaaatctggaaa--------------------ggTGGATTGTTGTCGAA--TAAATGTtgtttctttaa---------------------tttttttttgtaaat
i caePb3.Scfld02_0      C 0 I 29
e caeJap4.Scaffold17990   283984  34 -   357190 I
e cb4.chrX              11107442  71 + 21540570 I
e caeSp111.Scaffold626    874976   0 +  1189296 C
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=0.000000
s ce10.chrX              5777886 53 + 17718866 ATTAAATTATGAGACCCATAATGTCAGTTTCAATAATTTCCCCGACGCATTCT
e caePb3.Scfld02_0       4034793 29 +  4147112 I
e caeJap4.Scaffold17990   283984 34 -   357190 I
e cb4.chrX              11107442 71 + 21540570 I
e caeSp111.Scaffold626    874976  0 +  1189296 C
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=517.000000
s ce10.chrX              5777939 53 + 17718866 GAGCCTAAAA-----TTCAACAACAGTGAGATTATA-ATTTATTTACGTGTTGAATGAT
s caePb3.Scfld02_0       4034822 51 +  4147112 GAGCCgaaaaaaacctccaa--------aaaataTACGTTCATTCCCGCCTCAAATTAT
i caePb3.Scfld02_0      I 29 C 0
e caeJap4.Scaffold17990   283984 34 -   357190 I
e cb4.chrX              11107442 71 + 21540570 I
e caeSp111.Scaffold626    874976  0 +  1189296 C
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=-1756.000000
s ce10.chrX              5777992 46 + 17718866 AAAACAATA--CAACT---GTTTTGTTCAAATTCCTTTTTTTGTGAAAATT
s caeSp111.Scaffold626    874976 40 +  1189296 aaaataataatcaaCT---GTTTCTTTC---CTCCAATTAt-----aaatt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4034873 23 +  4147112 ---------CTTAACTTACGTTTATTTC---TTCA----------------
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17990   283984 34 -   357190 I
e cb4.chrX              11107442 71 + 21540570 I
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=-219.000000
s ce10.chrX              5778038 6 + 17718866 TGACCA
s caeSp111.Scaffold626    875016 2 +  1189296 ----ct
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   284018 6 -   357190 TAACTC
i caeJap4.Scaffold17990 I 34 C 0
e caePb3.Scfld02_0       4034896 3 +  4147112 I
e cb4.chrX              11107442 71 + 21540570 I
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=-483.000000
s ce10.chrX              5778044 8 + 17718866 --AAATTATT
s cb4.chrX              11107513 8 + 21540570 --aaattaat
i cb4.chrX              I 71 I 2
s caeSp111.Scaffold626    875018 5 +  1189296 -----ttatt
i caeSp111.Scaffold626  C 0 I 3
s caeJap4.Scaffold17990   284024 8 -   357190 AAAATTTA--
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4034896 3 +  4147112 I
e caeRem4.Crem_Contig0   2472637 107 -  4500979 I

a score=57623.000000
s ce10.chrX              5778052 163 + 17718866 CAGAAAGTTCATCCGCCGCTAGCAACTCGCAAGTCGACGAACCAGTTGTCGAACGACGAGTAATACATCCACCACAA---CATCCAACCTGCCAACTACGACGATTTAGTCAAGATCGATCTGCTCAAAAAATTCAACACTCCAGGTAAG-GTGAAACTTTTTTGAA
s cb4.chrX              11107523 165 + 21540570 cagaaaactcgtCGGCAATGACATCGTCTCAAATAGAAGAGCAGATAATAGAAAGGCGGAACGCTCACCAATGCGGAAACAACCAGAATTGCCAAGTCCGTCGGTTCAGCCAAGATCGGTCAGCACACAAAATTCAGCATTCCAGGTAAG--TAAGATTTTTCCGAA
i cb4.chrX              I 2 I 656
s caeRem4.Crem_Contig0   2472744 164 -  4500979 cagaaaatgcGTCAGCGGCAAGTAATTCACAAATGGAAGAACCTTATATCGAGCGACGTGGAGTTCACCAAGGCCCG---CACCAAGTTTGTCAGCAACGGAGATTTAGTCAGGACCGTTCGGCGCACAAAATTCAGCATTCACGGTGAGTTTCAAATCATACGAGA
i caeRem4.Crem_Contig0  I 107 I 12
s caeSp111.Scaffold626    875026 149 +  1189296 cagaaaatgcgTCGGCGGCGAGTAATACACAAGTTGAAGATGTGACTGTAGAACGCCGTGGTGCTCATCAAGCTCCG---CATCCAGTCTGCCAAGGTCGCCGATTCAGTCAAGATCGATCTGCGCATAAGATTCAACACTCTAGGTTGG--TT-------------
i caeSp111.Scaffold626  I 3 I 1
s caePb3.Scfld02_0       4034899 149 +  4147112 CAGAAAACGCGTCAGCAGCAAGCAACTCCCAAGTAGAAGACCCAACTATAGAGCGACGTGGTGGACATCAAGGACCA---CAACAAAACTGTCAAGTCCGAAGGTTTAGTCAAGATCGGTCAGCTCATAAAATACAACACTCAAGGTGAG--TG-------------
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   284032 146 -   357190 CAGAAAGTTCATCAGCGGCTAGCAGCGCGGTAAACGATGAAATCCCGTCTGAACGACGAGCTCCTCCACCTCCTTCC---CATCAAAC------GCACCGGCGATTCAGTCAGGATCGTACTACGCAGAGAATTTCACATTCTAGGTAGT--Tttaa----------
i caeJap4.Scaffold17990 C 0 C 0

a score=-50402.000000
s ce10.chrX              5778215 169 + 17718866 ACATTAAAAAAAAAGAGTCATGGCGAGTTTGACCTTTTTGATTCATGTTAAGAAGATTAGTGAAATGACCCAAATTCCTCTAC--TCTACTGTTTCATGTTTGAATTGAGTCCCATA-AAAATAATTGAAAATTGGT--------------CAAATATTGATTCTGAGCATTTCTTTTCCTAATTT
s caeRem4.Crem_Contig0   2472920 164 -  4500979 ACTGTTGGTGAAAA-------AGCGA--CTGACCGTGATT-TTCATATGTTTGAAACCGTTTCATC--CGCAGTTTGGTTAACATTATACGATCTGAGTCATATAGTGGACTTCAT------CTCTAGAAATTTCCTAACGGCGCAGTATGCAGATGAAAACCGTGAA-ATTTTAATTCggaa---
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    875176  29 +  1189296 ACAGTTCT-------------------------------------------------------------------TTATCAAC------CCA-------------------------------------AATTTA------------------GATA-----------------------------
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       4035048  81 +  4147112 ACAGTAATGAATGA-------TGTGA--------------------------------------------CAATATCGTGAAT------CCATCTCGGGAATATG-------TCAC------TATTTAGAATTTACT--------------CTGATACAAGTGAT---------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   284178  32 -   357190 ----------------------------------------------------------------------------------------------tgaggaaaaaa-------aaacataaatttattgaaatt-----------------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11107688 656 + 21540570 I

a score=136366.000000
s ce10.chrX              5778384 221 + 17718866 TTCAATCATTTTCAGATTCGATGCAGACAACGTGATTGACAAAATCATTGCCGAATGTCGAATATCGGAAGATGAAGTGGAGAGTAACAGCGGAGGCTTGGTGCTCGAGAAATTCTTGGATAAACATGGAAAGCCACTTGTCAATCCACGTCAACCCGTGAAACGGACGTCTTATGTGGCTGAACATTTCAATGATGCGTGAAAAAATTTTCCCGTTTTGT
s cb4.chrX              11108344 211 + 21540570 ttctctctttttcagaatcgaaacTGACAACctggtttcaaaaatcatcacCGAATGTCGTATATCGGAAGACGAAACCGACGCCAACAACACGGGTTTGGTGATAGAGAAATTCTTGGACCAAAACGGAAAGCCGCTCGTCACTCCACGTCAACCGACAAAACGGACCAGTTATGTCGCCGAGCATTTCAATGACATgtgaatat----------tcatt
i cb4.chrX              I 656 C 0
s caeRem4.Crem_Contig0   2473084 217 -  4500979 -tccattttttccagattcgaTGCTGACAACGTGATCAACAAGATCATTGCCGAGTGCCGCATCTCAGAAGACGAAGTCGAAGGTAACAATGCTGGTCTTGTTCTAGAGAAATTTTTGGATAAGAATGGAAAACCTCTTGTCAATCCACGTCCGCCGACAAAACGGACGTCTTATGTAGCCGAGCATTTTAATGATAATTGAATTCATag---ctatcaat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    875205 202 +  1189296 -----TTGATTACAGATTCGATCCGGACAACGTAGTTGACAAGATAATTGCCGAATGTCGCATATCAGAAGACGAAGTAGAAGGCAACAGCACTGGCTTAGTGCTCGAAAAGTTCTTAGACCAGAACGGAAAGCCACTTGTCACTCCACGTCAACTACCAAAACGGACATCTTACGTCGCTGAGCATTTCAAAGAAGTCTGAATAA--------------T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4035129 202 +  4147112 -----TTGTTTCCAGGTTCGATCCAGATAACATCGTGGAGAAAGTCATCACAGAGTGTCGTGTATCGGAAGATGACAATGATGCTAACAACTCTGGTTTGGTGCTCGAGAAATTCCTGGACCAGAACGGAAAACCTCTTGTCACTCCACGTCAACTACCCAAACGGACATCTTATGTAGCAGAACATTTCAAGGATGTCTGAGTTA--------------T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   284210 214 -   357190 tttaaaaatttaaagattCGACGCCGACAATGTCATTGACAAAATCATTGCCGAGTGTCGGTTGTGTGAGGATGAAATCGATGGCAACGATATGGGATTAGTGATTGAAAAGTTTCTGGATGAAAATGGAAAGCCGTTGGTCACGCCACGGCCACCGGCGAAGCGTGCCTCATACGTGGCCGAGCAACTTAACGACGAGTGATTTc-------catttcat
i caeJap4.Scaffold17990 C 0 I 1107

a score=-14882.000000
s ce10.chrX              5778605 57 + 17718866 TCTAAATTCGAAAATTTTC-TTATTTCTACTA--CTTATTTACTTTG--AAACTATGTGCAT-------------------
s cb4.chrX              11108555 74 + 21540570 ttttctttct--tattttc-tacTGT--ATCGTTATTGTATTTGTTG--GGATAGACTGCCTATTCCCAACTTTTTTGCAT
i cb4.chrX              C 0 I 47
s caeRem4.Crem_Contig0   2473301 51 -  4500979 ttttattcc----acTATC-TAC-----ATCA--ATTGTATTTTAAGAAGGACATACTATCTG------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    875407 45 +  1189296 TTTAGATCCG--AATTTTC-CCATGT--ATAA--TTAATTGTTTTCG--GGATA---------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4035331 34 +  4147112 GT----------ACTTTTCTTCATGT--------TTATTACTTTTTG--GGATA---------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   284424 1107 -   357190 I

a score=-4869.000000
s ce10.chrX              5778662 52 + 17718866 CATTTTGATGACTGCC--------TTTTTCATCTTACAAGCACTTT------CTGGTTTT-TGATAT--
s caeRem4.Crem_Contig0   2473352 34 -  4500979 ------------------------TCCCTCAT-------ACACCTC---TCGCTGGTTCTACAACTTT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    875452 48 +  1189296 ---------GACTGCCTATACccatttttta--------atgtttt--gtttctggttt--taactttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4035365 47 +  4147112 ---------GACTGCCAAG----CTTCTTTA--------ACACTGCAAACCTCTGGTTTC-CAACTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   284424 1107 -   357190 I
e cb4.chrX              11108629 47 + 21540570 I

a score=-20784.000000
s ce10.chrX              5778714 308 + 17718866  
s cb4.chrX              11108676 292 + 21540570  
i cb4.chrX              I 47 C 0
s caeRem4.Crem_Contig0   2473386 307 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    875500 564 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4035412 332 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   284424 1107 -   357190 I

a score=148720.000000
s ce10.chrX              5779022 407 + 17718866  
s cb4.chrX              11108968 446 + 21540570  
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2473693 416 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 90
s caeSp111.Scaffold626    876064 538 +  1189296  
i caeSp111.Scaffold626  C 0 I 5
s caePb3.Scfld02_0       4035744 389 +  4147112  
i caePb3.Scfld02_0      C 0 I 283
s caeJap4.Scaffold17990   285531 407 -   357190  
i caeJap4.Scaffold17990 I 1107 C 0

a score=0.000000
s ce10.chrX              5779429 5 + 17718866 ATGTT
e caePb3.Scfld02_0       4036133 283 +  4147112 I
e caeJap4.Scaffold17990   285938 0 -   357190 C
e cb4.chrX              11109414 5 + 21540570 I
e caeSp111.Scaffold626    876602 5 +  1189296 I
e caeRem4.Crem_Contig0   2474109 90 -  4500979 I

a score=390.000000
s ce10.chrX              5779434 2 + 17718866 TC
s cb4.chrX              11109419 2 + 21540570 TC
i cb4.chrX              I 5 I 31
s caeSp111.Scaffold626    876607 2 +  1189296 tt
i caeSp111.Scaffold626  I 5 C 0
s caeJap4.Scaffold17990   285938 1 -   357190 -C
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4036133 283 +  4147112 I
e caeRem4.Crem_Contig0   2474109 90 -  4500979 I

a score=770.000000
s ce10.chrX              5779436 9 + 17718866 AATTATGGT
s caeSp111.Scaffold626    876609 9 +  1189296 gagTGTACT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   285939 9 -   357190 aaatatggt
i caeJap4.Scaffold17990 C 0 I 21
e caePb3.Scfld02_0       4036133 283 +  4147112 I
e cb4.chrX              11109421 31 + 21540570 I
e caeRem4.Crem_Contig0   2474109 90 -  4500979 I

a score=153.000000
s ce10.chrX              5779445 15 + 17718866 TAATCAAGCGTCAAA
s caeSp111.Scaffold626    876618  9 +  1189296 T------GCGTCAGa
i caeSp111.Scaffold626  C 0 I 43
e caePb3.Scfld02_0       4036133 283 +  4147112 I
e caeJap4.Scaffold17990   285948 21 -   357190 I
e cb4.chrX              11109421 31 + 21540570 I
e caeRem4.Crem_Contig0   2474109 90 -  4500979 I

a score=0.000000
s ce10.chrX              5779460 244 + 17718866 TTGTTATAATTGGTTTTTTTGTTTTGATTAAAGTggttattcaagtaattttgcgaaatgtattttaatacatttttgacgtcacagctgtattaaaatacaagttttgtgtatttcaatacagttgtgacgtcatttttctatactttttaattttccgacactacttgaataacatcaTTaagagtgatctgttcttcactgcggatctgggtgtcaattgcactggctagttatacaccca
e caePb3.Scfld02_0       4036133 283 +  4147112 I
e caeJap4.Scaffold17990   285948  21 -   357190 I
e cb4.chrX              11109421  31 + 21540570 I
e caeSp111.Scaffold626    876627  43 +  1189296 I
e caeRem4.Crem_Contig0   2474109  90 -  4500979 I

a score=-1005.000000
s ce10.chrX              5779704 174 + 17718866 gtgagctttagttcgagtcacacttgagcccgggactgtggctgataatccagaatctagagggagcacttgaaccagtgacctcatgattgctagcggccaccagtaccgactgagctatcCCGATC-----------------------ATGTTGTGATAATTTCAGATTG-TATAGTTTCG--------------------TTTCCACATCAAAT---------
s caePb3.Scfld02_0       4036416 224 +  4147112 GTGAAAGGTAATCGAAAATCCAATCAACCTATGGAAGTTGGCTGATGATACACAGACTGAAGCTAAAACTCTACCAATTGCCCC---GCTAAATCAAAGCTACTGGTACCTACAATGATTTCCCTAACGCTAATGCCACTAACTGAACGAAAGGTTTCCATCATTCGAAAGTGGTGCATGTTTGACATAAGCTTTTCCATAAACTTCCCCcaacaaattttctgaaa
i caePb3.Scfld02_0      I 283 C 0
e caeJap4.Scaffold17990   285948  21 -   357190 I
e cb4.chrX              11109421  31 + 21540570 I
e caeSp111.Scaffold626    876627  43 +  1189296 I
e caeRem4.Crem_Contig0   2474109  90 -  4500979 I

a score=910.000000
s ce10.chrX              5779878 1 + 17718866 A
s cb4.chrX              11109452 1 + 21540570 a
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   2474199 1 -  4500979 A
i caeRem4.Crem_Contig0  I 90 C 0
s caeSp111.Scaffold626    876670 1 +  1189296 A
i caeSp111.Scaffold626  I 43 C 0
s caePb3.Scfld02_0       4036640 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   285948 21 -   357190 I

a score=347219.000000
s ce10.chrX              5779879 325 + 17718866 CTTACCAAGCATTAAGCCAAAGGTTAAGTCCGAAGAGCCAGATGACAAGAACAATCGCGGAAAGCTTTGTCTTGTAACCAATTGAGACGAGAGTGATGAGAGCAAATCCAACAACAATCTCCAAAACTTGCATGAAGGACATCTCAAAATGCATCAAAGACATGAACATGAAGATAAGAAGAACACGTCCGGCAAGAAGCATGTACGATTTTGGCTTGTTCGAGTCTCCCATTGTTGGAACTCCGGCGAACAGGGAAGCCTTCTCTTCCTGTGTCTCGGCAAGAAGGAGCAAAAGTCCTCCACCAACGGCAATGTTTCTGAAATT
s cb4.chrX              11109453 325 + 21540570 ctTACCAAGCGTTAAGCCAGAGGTTGAGTCCGAAGAGCCAAATGACGAGAACCATAGCGGAGAGCTTAGTTTTGTATCCAATGGAGACGAGGGTAATGAGAGCAAATCCAACGACGATTTCCAAAACTTGCATGAAAGTCATCTCGAAGTGCATGAGCGACATAAACATGAAGATAAGAAGGACACGTCCAGCAAGAAGCATGTATGACTTTGGCTTGTTGGAATCTCCCATGGTTGGTACACCGGCAAACAGCGAAGCTTTCTCTTCTTGGGTCTCAGCGAGAAGAAGCAAGAGTCCTCCACCGACAGCGATGTTTCTAGAACA
i cb4.chrX              C 0 I 83
s caeRem4.Crem_Contig0   2474200 325 -  4500979 CTTACCAAGCGTTAAGCCAAAGGTTGAGTCCGAAGAGCCAGATGACAAGAACCATAGCAGAAAGTTTAGTCTTGTAGCCGATTGAAACAAGAGTGATGAGACCGAATCCAACAACGATTTCCAGAACTTGCATGAAGGTCATCTCGAAGTGCATCAAAGACATGAACATGAAGATAAGAAGGACACGTCCGGCAAGGAGCATGTATGACTTTGGCTTGTTCGAATCTCCCATGGTTGGCACTCCAGCAAAAAGGGAAGCCTTCTCTTCCTGAGTTTCAGCGAGAAGAAGCAAGAGTCCTCCTCCGACAGCGATGTTTCTGGAAGA
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold626    876671 325 +  1189296 CTTACCAAGCATTCAGCCAGAGGTTAAGACCAAAGAGCCAGATGACAAGAACCATGGCGGAAAGCTTAGTCTTGTAACCAATTGAAACCAATGTGATGAGAGCGAATCCGACGACGATTTCCAGAACTTGCATGAAGGTCATCTCGAAGTGCATCAAGGACATGAACATGAAGATGAGGAGAACACGTCCAGCGAGAAGCATGTAGGATTTTGGCTTGTTAGAATCTCCCATAGTTGGAACACCAGCGAAAAGAGAAGCCTTCTCCTCCTGAGTCTCGGCGAGAAGAAGCAAGAGTCCTCCTCCGACGGcgatgtttctgaaaat
i caeSp111.Scaffold626  C 0 I 32
s caePb3.Scfld02_0       4036641 325 +  4147112 cttaccaAGCGTTGAGCCACATGTTGAGACCGAAGAGCCAAATGACGAGAACCATTGCAGACAGTTTAGTCTTGTACCCAATCGAAACCAAAGTGATGAGGGCAAATCCAACAACGATTTCCAAAACTTGCATGAATGTCATCTCGAAGTGCATCAAAGACATGAACATGAAGATGAGAAGGACACGTCCGGCGAGAAGCATGTAAGACTTTGGCTTGTTGGAATCTCCCATTGTTGGAACACCGGCGAAAAGGGAAGCCTTCTCTTCTTGAGTCTCTGCGAGAAGAAGCAAAAGTCCTCCACCGACAGcaatgtttctgaaata
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17990   285969 317 -   357190 CTTACCAAGCATTCAACCAGAGGTTCAATCCAAAGAGCCAGACAACCAAGAGCATTGCAGAAAGCTTAGTCTTGTATCCGATAGAGACAAGAGTAATAAGAGCGAATCCGACAACAATCTCCAAAACTTGCATAAAGTTCATCTCAAAGTGCATCAACGACATGAACATAAAGATGAGAAGGACACGTCCGGCGAGAAGCATGTACGACTTTGGCTTGTTTGAATCTCCCATAGTCGGAACACCGGCAAACAGCGACGCCTTCTCCTCCTGAGTTTCCGCAAGAAGCAACAAAAGACCACCGCCAACTGCAATGTTT--------
i caeJap4.Scaffold17990 I 21 C 0

a score=0.000000
s ce10.chrX              5780204 31 + 17718866 TTACGTTTATTGCGAGTTCAAAGGAAACAAA
e caePb3.Scfld02_0       4036966 33 +  4147112 I
e caeJap4.Scaffold17990   286286  0 -   357190 C
e cb4.chrX              11109778 83 + 21540570 I
e caeSp111.Scaffold626    876996 32 +  1189296 I
e caeRem4.Crem_Contig0   2474525 35 -  4500979 I

a score=417543.000000
s ce10.chrX              5780235 661 + 17718866  
s cb4.chrX              11109861 671 + 21540570  
i cb4.chrX              I 83 C 0
s caeRem4.Crem_Contig0   2474560 692 -  4500979  
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold626    877028 666 +  1189296  
i caeSp111.Scaffold626  I 32 C 0
s caePb3.Scfld02_0       4036999 678 +  4147112  
i caePb3.Scfld02_0      I 33 C 0
s caeJap4.Scaffold17990   286286 632 -   357190  
i caeJap4.Scaffold17990 C 0 I 1755

a score=7975.000000
s ce10.chrX              5780896 374 + 17718866  
s cb4.chrX              11110532 520 + 21540570  
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   2475252 447 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    877694 400 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4037677 411 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   286918 1755 -   357190 I

a score=-7789.000000
s ce10.chrX              5781270 36 + 17718866 --------------------------------CCACCGCGGATGACGTATTTAACAACAAGTACACAC
s caeRem4.Crem_Contig0   2475699 43 -  4500979 CTGCACCCGTTGGCCCCGCTCGGTTACA----CAACTGACG-TGGgtt--------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    878094 40 +  1189296 -----------------AAACAACAACAGCACCAACTGACG-TGAAGCAAT--------AGAacaa--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4038088 34 +  4147112 -----------------GGAAAGACACA--AGCAACTGACG-TGAGGcatt------------cac--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   286918 1755 -   357190 I
e cb4.chrX              11111052 37 + 21540570 I

a score=21172.000000
s ce10.chrX              5781306  81 + 17718866 ACAAAAAATCGGATGACATATGAAAA------------ATGGAAATTAAAATGAGAACAATC-----GTCGC------------------CAAACATAACA---TCTC----------------------------------------TCCAGGTAGGA
s cb4.chrX              11111089 159 + 21540570 atgaaaaaaggaaggaagTAGAGAAAAGAGGGTAGAATTTggatataaaaaaagaaacaaacaaGGCACCGCCTGAATTTCGAGACTACAAAAACATCACTCTTTTTCGAATCATTTTGTCCTTCTGTCTCTCTTGACTCTCTGTTTCTCCAGGTAGGA
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   2475742 118 -  4500979 aagagaaaaaagaagacgtttgAAAA-----TTAGAGTGTACGTATATAAATAGAAACAATCA----GCCgcctgaattttg--------aaaacatcattctctttc------------------------tctgattctcattttctccaggTAGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    878134  93 +  1189296 gcgaaaaaaaattggagcCAACGAAT-------------TGAgtataaaaatagaaacaatcG----AGCGcctgaatttcg--------aaaacatcatt-tctctc----------------------------------------ttcaggTAGGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4038122  94 +  4147112 aacaaaaaaaatgagatctgGGAAAT-------------TGAgtataaaaatagaaacaatcA----GCCGcctgaatttcg--------aaaacatcattctctctc----------------------------------------tccagGTAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   286918 1755 -   357190 I

a score=68078.000000
s ce10.chrX              5781387 117 + 17718866 GG-AAAACCGTCAAAGCTGCACAATGTCAACACACAAGGCGGTCACGACTTTTTGTTTATCAAACTGGCCAACAGA----TGGCCGCGCCGATG-----AATGGTGGATATTTGGAAC--GG------AATTGAA
s cb4.chrX              11111248 126 + 21540570 GGAAAAACCGTCAAAGCTGCACAATGTCAATAC--AAAGCGGTCACGACTTTTTGTTTATTAAACTAGCCAACACA----TGGAC--AAGGGAGGAT-TGACGGCGAATATTTGAACAAACccaagattttggaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2475860 119 -  4500979 GG-AAAACCGTCAAAGCTGCACAATGTCAACAC--AAAGCGGTCACGACTTTTTGTTTATTAAACTAGCCAACATATGGCTGGCC--ACTGGAG-----GACGGCGAATATTTGAACGGATC------GTTGGaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    878227 115 +  1189296 GG-AAAACCGTCAAAGCTGCACAATGTCAACAC--AAAGCGGTCACGACTTTTTGTTTATTAAACTAGCC-ATGGA----TGGAC--GACGCAAAACCT--CGCAGAATATTTGAACA--CT------Gattgaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4038216 118 +  4147112 GG-AAAACCGTCAAAGCTGCACAAAGTCAACACAGAGAGCGGTCACGACTTTCTGTTTATTAAACTAGCCAACAGA----TGGTTG-GACGCAGATTCGGACTCCAAACAT---AAAG--CT------ATTCGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   288673 108 -   357190 GG-AAAACCGTCAAAGCAGCACAATGTCAATAG--ACAACGGTCACGACTTTTTGTTTATAAAACTGGCCGCCGGC----CGGCAT-ATGGGTG-----------GAATATTTgaacg--gg------aacggaa
i caeJap4.Scaffold17990 I 1755 I 691

a score=-5536.000000
s ce10.chrX              5781504 31 + 17718866 AATTTT-TAAATCTTTAATGA-----------------TACACGTTTTA
s cb4.chrX              11111374 21 + 21540570 attttttcgaatatttatAAA----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2475979 21 -  4500979 gaatttcggaatctcgaTTAA----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    878342 37 +  1189296 taattt-tggaattcGATTAAATAATATACATAGTTTT-----------
i caeSp111.Scaffold626  C 0 I 90
s caePb3.Scfld02_0       4038334 21 +  4147112 -------TGAATTTCCATTAAATATGAT---------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288781 691 -   357190 I

a score=-1920.000000
s ce10.chrX              5781535 12 + 17718866 AAGCTGGGTTTT--
s cb4.chrX              11111395 12 + 21540570 CGGCTGAATCTC--
i cb4.chrX              C 0 I 114
s caeRem4.Crem_Contig0   2476000 12 -  4500979 ACAATACAGTTC--
i caeRem4.Crem_Contig0  C 0 I 15
s caePb3.Scfld02_0       4038355  8 +  4147112 ------CGGTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288781 691 -   357190 I
e caeSp111.Scaffold626    878379 90 +  1189296 I

a score=-3018.000000
s ce10.chrX              5781547 99 + 17718866 AAGTGTATTTTGAGCAAACGTTGGGTTATCTATTTTGTTTTTAAAGTTTGACAA-AAAGACGTCAGCTTT---CGCTGAATACACTGGCAATGAATACACCGC----------------------------
s caeRem4.Crem_Contig0   2476027 88 -  4500979 -----------------------------------------TTGAGTTCGACGAGAAAGCCGTGGGCGGCAGTTATGTTTGACGTCGActaggaaaaaaataattcaccgagtgtgtatgtgtgtgtgc--
i caeRem4.Crem_Contig0  I 15 C 0
s caePb3.Scfld02_0       4038363 97 +  4147112 AGGCGAAT-----------------------------TCGTTGGAGTTTGGCAAGAAAGCCGTGGGCGGC---TGCGTATGACGTCGTCTAT--AGAAAACGGGGAAAAGAGTGTTTGTGTGTGCGTCATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288781 691 -   357190 I
e cb4.chrX              11111407 114 + 21540570 I
e caeSp111.Scaffold626    878379 90 +  1189296 I

a score=700.000000
s ce10.chrX              5781646 12 + 17718866 ---GTCACGTCAT------CG
s caeRem4.Crem_Contig0   2476115 15 -  4500979 gtgtgtACGtcat------cg
i caeRem4.Crem_Contig0  C 0 I 8
s caeSp111.Scaffold626    878469 12 +  1189296 ---ATTACTTTTT------CG
i caeSp111.Scaffold626  I 90 C 0
s caePb3.Scfld02_0       4038460 18 +  4147112 ---ATTACTTTTTTATTCGCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288781 691 -   357190 I
e cb4.chrX              11111407 114 + 21540570 I

a score=14662.000000
s ce10.chrX              5781658 242 + 17718866 TATACACAGAATTGATACTGAACTTGCGGAA-------------ATAGTACAGCGAAGTCATTGGGTAA-ATGAGTAATGTACAATAGAGAATGGAAATT------A---TTCTTTATCACTTCCGCTACAGTTGTGTAAAAACTAAGCTAGGGAA--------AAAAC------------------CTTAAACTGGTTGAAAAAAGCGGTTCAAAAGTAAGAGTT-TGGATGTCAACGGGCATAAGTGACGGGCGTTTATG---TGAACGACT-------------CTTTCCTAAACAGGTTT--TCTC
s cb4.chrX              11111521 225 + 21540570 tgtgtACTACATTGAAACAGAACTATTGGAG------------------ACACC--AGTAATCTAACGATCGCATCTCTACAATAACAGAACAACCCAAA------A--------AATGGCTTCCTA------------AACTTCTAAATAgggga-aaaaagggaaac-------------------gCTAACCGGTTCTAATA---GGTTC-AAAGTAAAGGTC-TCG--ATCCATAATCATAAGTGAAG--CG--------CCAAGTGACTCTTCTTCCGCTCCCTTCCAAAAACGGGTTT--GTTT
i cb4.chrX              I 114 C 0
s caeRem4.Crem_Contig0   2476138 257 -  4500979 tttgtactaCACAGAAACTGAACTAGTGTAGTATCTGTGATTTGGTACAACAAA--AGTAATCGGAAAA-CGAATCTATCAttcaaagaaacaaaaaaaa------acttttcttgaTGGTTTCCTA---GTTTACTC-AACTCTCGAGTAGTGTA-TCCAGTGTAAACAAAAC-------------AGCAAACCGGTATTAATA---GGTTC-AAAGTAAAGGTC-TCG---TCCATAAGCATAAGTGAAG-ACGTT--TAGCCCGAATGACT-------------CTTCCAAAAACGGGTTC--TCTC
i caeRem4.Crem_Contig0  I 8 C 0
s caeSp111.Scaffold626    878481 248 +  1189296 ----TAGTACACTGAAACTGATCTAAAggaaagcaaaagaaaaggaagtaCAACCAATTGATCGAGTAA-ACgatctattcaaaaaaaaaagcaaaaaaaccgCTGA--------GATGGCTTCCTG---GTTTGCGCAAACTCTCGAGTAGGTCA-TCCAGTGTAAACAATGA-------------ACAAAACCGGTTTTAATA---GGTTC-AAAGTAAAGGTT-TTGATGTTCACAG--AAGA--------CGTT-------TAAGTGACT----------TCCCTTTGCAAAACGTGTTCTTTCTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4038478 256 +  4147112 ----CAGTACACTGAAACTGAtctgaag-------agagaaaggaaagtACAACGCAGTAATAGAG------AACCTATTACTAAAAGAAACGATAGTTTTTGT--A--------GCTAGCTTCCTG---GTTTACGCAAACTTTCGAGTAGGTCACCCCAGtgtaaacagaaaaagaaaacagaagaagaaaccaGTTTTAATA---GGTTC-AAAGTAAAGGTTCTCGTTATCCATAAGCATAA--------CGTTTAGAGGCTAAGTgact----------cttcttctcaaaacgtGTTC--TCTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   288781 691 -   357190 I

a score=46609.000000
s ce10.chrX              5781900 182 + 17718866 CGGACAAATGAAAACG--------AAAACATAAGCGACG--A-GAAAAGAAG-------GGGAACTGAACCGAA----------------------------A-GGGGCAAATGGAGGAAGAGGA---------GGCACA---CGAAATGTAG---------AGAGACCGCGTCGCAGCCGCACGCGAGCTGATGTGG-TGGTTGT--GGTTTGAA----------------AATAGAAATGACACTCTCGAAAAGGA--AGGAGAAAGAG
s cb4.chrX              11111746 199 + 21540570 CGGAGAAACGAAAACG--------AAAACATAAACGACT--A-GGAGA----------------CTGAACCGACAT--------------------------T-GGGGTGAAAGGCA--AGATGAGGAGTGTGGGGCACA---AAACAGG-AGA-----AAAAGAGGC--CATCGCAGCCGCACGCGAGCTGATGTGG-TAGCTGTGAGGTTGGAATCCAGCaaaaaaaCGCAGTGGAATTGACACTAtcaaaaaacgtcaaaaaag----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2476395 181 -  4500979 CGGACAAACGAAAGGG--------AAAACATAAGAG-----A-GGAAAT-AG-------TGGTGTTGAACCGAA----------------------------T-GAGGCGAAAGGAG--AGAGGA---------GGCACG---AAATAGGAAGA-----GACAGGGGCCGCGTCGCAGCCGCACGCGAGCTGATGTGG-TGGTTGC--Ggtcggaa---------------aaatgaaaatgacactctcgaagaagg--aaagaaggaaa
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    878729 163 +  1189296 CGGACAaacgaaaacg--------aaaacatAAGCGACG--ACGGA------------------TTGAACCGAA----------------------------T-GAGGCGAAAAGA----GGGGA---------GGC-------AACACG------------AGAGACCGCGTCGCAGACGCACGCGAGCTGATGTGG-TTGCGCC--AGTCGAGA--------------ATAATGGAAATGCCACTCActaatgaga--agaaaaggcaA
i caeSp111.Scaffold626  C 0 I 23
s caePb3.Scfld02_0       4038734 156 +  4147112 CGGACAAACGAAACCA--------AAAACATAAGCGAAG--A-GGA------------------TTGGGCCAAA----------------------------TAGAGGAGAAGGCA---CGAAGA---------GGC-------AA------------------AGGCCGCGTCGCAGCCGCACGCGAGCTGATGTGG-TAGCTGt--tgccaaaa----------------aatgaaactgacgTTCACTAGCGAGA--AAAGAAGGCAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   289472 231 -   357190 CGAACAAACGAACACGAAGACCATAAGACATAAGCGAcgaaa-ggaaaaaagaaaaagaaaatgctgAACGAAAATGGAATGGCCATGGCGAGATGAGATTGC-aggaagaaagaag--aagaga---------gGCACGAACAAATGCGGGGAGAGTTGAGAAGGGCCGCGTCGCAGCCGCACGCGAGCTGATGTGGTTGGCGAT--AGTCGGAA---------------------AATTAGGCGTCGGGAAGGAAC--GAGGTAGac--
i caeJap4.Scaffold17990 I 691 C 0

a score=-4151.000000
s ce10.chrX              5782082 24 + 17718866 --------AGTATATCACCGCTCCCGAGTATC
s cb4.chrX              11111945 13 + 21540570 -----------------CAGCATACATGGC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2476577 22 -  4500979 --------tgtaTATCACAGCTTATACGGC--
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       4038891 22 +  4147112 --------CCTATATCACAGCTAAGATGGT--
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   289703 24 -   357190 attttgtttgtttgtttgggCTTA--------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    878892 23 +  1189296 I

a score=8774.000000
s ce10.chrX              5782106 12 + 17718866 ACCACCTGCCAA
s cb4.chrX              11111958 12 + 21540570 ACCACCTACCAA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2476599 12 -  4500979 AACACCTGCCAA
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    878915 12 +  1189296 GACACCTGCCAA
i caeSp111.Scaffold626  I 23 I 142
s caePb3.Scfld02_0       4038913 12 +  4147112 AACACTTGCCAA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990   289727 12 -   357190 AACGTTTTGGAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-28390.000000
s ce10.chrX              5782118 142 + 17718866 GTAGGTGCCATTGAATTCAACCATTTT--TATGAATGAATTATGATTTAAAATACATTA-GAAGTTGAAGATAATCGAAAGACTAC-------------AGAAAAAACGCAAAAAA-AGATAAAAGTAATGTTACATAAAGTTTTCGGTAAAACTGGTT
s cb4.chrX              11111972 126 + 21540570 AAAACAGGCGTGCGACTGATT-------------------CCCGACTAGAGAAACCGCTCTGGAAACGaggaaaacaaggaaaaccCACCAATGAACCGATAAAAAGCACAAGTAG-AAATGACA-------------ACATTGTTATCGAAAACAata
i cb4.chrX              I 2 I 2
s caeRem4.Crem_Contig0   2476618 140 -  4500979 AGGGCAGCCGTTGGTCGGATTTGTGT-----------TCATTTGACACTAAACACCGCG-TATACTTCAGGAAACCGTGGAAAATC-------AAAGCGAAAAGGTtcaaaaggagaaaataataaaagagCCAACTCATATTGTTatcgaaaacacaa
i caeRem4.Crem_Contig0  I 7 I 2
s caePb3.Scfld02_0       4038931 124 +  4147112 GAAGGAGTACTTGGGTCAATCCCTCC--------ATGCCATCTGTTT---------GTT-TGTGTACTAGTTA--CGTGGCGAAct-------------acaaaaagtttgaagaa-aaacaaacaaagttGCAACTCACGATATCAG-GAAAACAata
i caePb3.Scfld02_0      I 6 I 3
s caeJap4.Scaffold17990   289739 127 -   357190 -----GAGCATGAAACATTTTGATATTGAGATTTGGGTAATATGACACAGAAATCTACG-TG-ATCCTACATATTTGTCTCaaatg-------taaacaagaaaa-----gagctg-aaatgacga------------aaacctacggaaaaactaaaa
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    878927 142 +  1189296 I

a score=48906.000000
s ce10.chrX              5782260 116 + 17718866 GAGCG--AAAAATCACAA------AAGAT--GTT-------TGTTTTTACGAGAGCT---------GCAACTGGTTCCACGTTGTTACATGTTGTGAGGTAGCAAATGCGTCAGCAGCCACCACTTGGCGCGTTTCGTGTGC
s cb4.chrX              11112100 128 + 21540570 aagtgaaaaaaatcggataaCCTCATCATTGGTT-------TTCTAGCAAGAGAGCTAC-------ACAACTGGTTCCACGTTGATCGGTTGTGTGTTGCACAACGCGCACCAATCACCGATCGTTTGCGCGTTTTGCGTGC
i cb4.chrX              I 2 I 17
s caeRem4.Crem_Contig0   2476760 117 -  4500979 aagcg--TAAAATCGGAGAA----ATGAT--GTT-------GTTTTTTACGAGAGCT---------GCGACTGGTTCCACGTTGTTATATTATGTG-CGCACGAAATGCGTCAGCAAAAAAGTGAGGGCGCATTTCCGGTGC
i caeRem4.Crem_Contig0  I 2 C 0
s caeSp111.Scaffold626    879069 115 +  1189296 aagtg--aaaattcgGAGA-----AGGAT--GCT-------GTTTTT-ACGAGAGCT---------GCAACTGGTTCCACGTTGTTCTGTGACGGGGTGCACTAAACGCGTCAGC-AAATAGGAAGGGCGCGTTTTGCGTGC
i caeSp111.Scaffold626  I 142 C 0
s caePb3.Scfld02_0       4039058 114 +  4147112 -agtg--aaaaatcggTGA-----ACATG--GGT-------ATTTTTAACGAGAGCT---------ACAACTGGTTCCACGTTGGTATATGACGTTACACGAAAAATGCGTCAAC--AGCACGGAGGGCGCGTTTCTCGTGC
i caePb3.Scfld02_0      I 3 C 0
s caeJap4.Scaffold17990   289866 134 -   357190 -aataaaacaaacccGAGA-----ACGTT--GttatatacatttttttacgAGAGCTGCATTGAATACAACTGGTTCCACGTTGTTACATGACGCGACGCGCGAAAAGCGTCAGCATTCGCCGGTTTGCGCGTTTCTCGTGC
i caeJap4.Scaffold17990 C 0 C 0

a score=-2080.000000
s ce10.chrX              5782376 14 + 17718866 GTTCCCCCACACCA
s caeRem4.Crem_Contig0   2476877  4 -  4500979 ----------GCCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879184  4 +  1189296 ----------ACCC
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       4039172  4 +  4147112 ----------ACCC
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   290000 12 -   357190 CTTAATTTGGAC--
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11112228 17 + 21540570 I

a score=25196.000000
s ce10.chrX              5782390 58 + 17718866 AAAAAGGGCGCATTGTATGCAACATTTGCGTTTTTTC-ATTGATTTTCCTAATTTATTA
s cb4.chrX              11112245 57 + 21540570 AAGTGGGGCGCATTGTTCGCAACG--TGTGTTTTTGGCATTGATTTTCCAGCGTAATGA
i cb4.chrX              I 17 C 0
s caeRem4.Crem_Contig0   2476881 57 -  4500979 GACAAGGTTGCATTGTTCGCTACGATTGCCCTTTTTCTATCGATTTCC--GCTTAATTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879191 58 +  1189296 AAAGGAGGCGCATTGTTTGCAACGTTTGccctttttctattgattttc-tgCCTAATTA
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       4039178 57 +  4147112 AAAGGGGACGCATTGTTTGCAACATTTGCcctttttc-atcgatttcc-acGATAATTA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   290012 52 -   357190 -------GGGTTTTGCTTGCTGCTTATGCCACcttttcattgattttcgcTGCTTATTA
i caeJap4.Scaffold17990 C 0 I 1894

a score=-68273.000000
s ce10.chrX              5782448 318 + 17718866 CAACGTGAATTTATTTTTAAACAGAAATCAGTACACTAACATTCACAGTCTTGCAATAAATGCTGCACTGACAAACAATAAGTTTTGCACTGAAAAAAATCGTTTTTTGTCATTGCAAAAAAT---TTTCAGTTT---GCTGTAAAA------ATTAAATGAAACCTTTAACCCG-------TTTTCTTATAAAAGAAAGTTTTAATTGTCTTGTTCAACAAAACATTGAAAATTTTCGCAACGATTAAAAAAGCAATAGATGTGATATGAACTTTTCTATTTAAAATT--------GAAGAACATTGTGTTAGTTTCT--ACTTTTTTTTT--------AACATCAATTATTTT
s cb4.chrX              11112302 269 + 21540570 CTGAA---GTATTCTAATGAATTTAGTGTAATGTGCGA--------------GGAGAAATTGCTGGAAT--CAAGGTATTCTCTTTA-------GTAAGTCtttctttcagttttcaagtgttgtattattttttcatgccGTAAAG-------GCAAgtgaaactgtaaaattgcGCAAACTTACCGTTTAAAACAAAACT---------------AACAATAC----------------------CTTTatgttccattttt--------------catttaaaaatctgCTGAAAAATCACAGTC-ATTTTTTCGTA-ACCTCGTTTTCGCCGCctgaaaaccgattttttt
i cb4.chrX              C 0 I 80
s caeRem4.Crem_Contig0   2476938 213 -  4500979 CTACA---ATTTGTCAGTGTAATGAGTGTAA----------------------------------------CAAAG---TCTTTTTA--------CGATTTATTCTGTGACTTTCCTACTGGTGAATGTGTTCTCTGAGCAATAGTGTTTAATAGTAATTAATGCTGTTAAAATG-----------TTTCTAAAGCA--------------------AGTATCAC----------------------CTGCAAGTAGtgtattt--------------tatttaaaagt--------aAAACAAATTG-AACGGGCTGT--ATCACGTTTCC--------ATAATAAACTCCC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879249 186 +  1189296 CTACG---TTTTGTTAATGAGAAGAGTGTAA----------------------------------------TAAGC---TATGTTTT-------ACAGTTCTCCTTGCAATTTTTCATGTGGTG-AGTATTTCTT---ACAATG-AATCAAgtagaaaatgatagaacATTCGTG----------CCTCTTATA-----------------------AATCTGAC----------------------GAAAATGTAGTAGTTC----------------------TAGT------------------------GTTTGTAGCTTCTATATCCAAT-----AATCTCAACT-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4039235 161 +  4147112 CCTCTC--TTCTACTAATTAATAGAGTG------------------------------------------------------------------------------------TAAAATGCAGTGTTTTATAGTTC---GCATTGTAATCTTCTCCTTATTAGTGCGGTAATGGCA----------GCCTTTATAGCC--------------------AAATTCAC----------------------TAGAAgaaagttgaac-------------------aaaaaat------------------------gttcatttataCTATTTTAACA-----ACTATCAAGT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I

a score=-2559.000000
s ce10.chrX              5782766 98 + 17718866 TGATCAATGATCA-TTTAAATTATTGGCTTTCTTCAAACTCGCTCCAAGCAAATTAGCTCAATTTTGCCAAC-AACACATCCTCCGTTGCCAACCGACAC-
s caeRem4.Crem_Contig0   2477151 81 -  4500979 AGGTCCCTgttcaatttcttttattttcttt-------------------gaattagCTTCGTTTCCCCTTGAAACCCAT-TTCCGTTGCTTACCGACCAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879435 63 +  1189296 --------------TCTCAGCTATCCccgtt---------------------tttcgtttctctccATGGTG-CATCCGC-TTCCGTTGCCTATCGACCA-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4039396 61 +  4147112 --------------TCCAAGAAAATTTGCTT-------------------AATCTAGATCTCTTGCAT-----CATACAT-TTCCGTTTTCTACCgactc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I
e cb4.chrX              11112571 80 + 21540570 I

a score=-16570.000000
s ce10.chrX              5782864 36 + 17718866 CCCACTTTCGCTGCTGCTGCCCAAATACTCCGCTT---C----------------------------------
s cb4.chrX              11112651 37 + 21540570 TCCACTTGAAAT--------GCGTCTATCCTattt---tcc----tcatttc---------------------
i cb4.chrX              I 80 C 0
s caeRem4.Crem_Contig0   2477232 37 -  4500979 ----CGCGAGCT-------CTCATACATTTCATTTATATAC----TCATTTC---------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879498 40 +  1189296 ------------------------------CTCTt---cacaaaatgaatttcccGTTGAAATACGCCTCTGC
i caeSp111.Scaffold626  C 0 I 29
s caePb3.Scfld02_0       4039457 21 +  4147112 ------------------------------ctttt---ttc----tgaactccCTCCT---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I

a score=-4688.000000
s ce10.chrX              5782900 18 + 17718866 -----TCTCAGGATTTTTCGACC--------
s cb4.chrX              11112688  4 + 21540570 tctT---------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2477269 31 -  4500979 CCTTTCGTTGAGAGCTTCAAAGTCTTGTGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4039478 18 +  4147112 -----CGTAAGGAGCCATTGAGA--------
i caePb3.Scfld02_0      C 0 I 4
e caeJap4.Scaffold17990   290064 1894 -   357190 I
e caeSp111.Scaffold626    879538 29 +  1189296 I

a score=-68201.000000
s ce10.chrX              5782918 292 + 17718866 ACGAGAGTACATTTCAGT-AGATGCGAGATGGAATCTATCCTA-----TTCCTGACAAATAATGTGAATTTCTTGCCGTTAGTCTTGCGCTAATGGAAATGTGTACTTTATATTC------TATGCAGATGAAGCTTT-----------------------A-----------AAGATAGGAAGGCTT------AAGCGTATTTCTTAT-TGATTGA---AACGTGTAAAAACATCATT-TGCAAATTTAGA------ATAATTT---TTG---------------------------------AGAAGCAAGATATG--------------TAAATTGAGAAAAGA----ATGTTCTTCAT-------------------------AAGT-----CCAATTCTTAATTTTGAAA-AAAATTATGTTATAG-----ATACCACCT---------
s cb4.chrX              11112692 343 + 21540570 ----------GCTCTAGT------------------------------TTCATAAGGAGCGGGTggagaatctttttttttg------------------atgttttctcCACTCAGAAAATTaccagtaatttttttaaaaaccttaAGTAataatttgca-----------aaaaaatcaaagctcTGTGACGATCGTCTTTTCAAT-Tgaccga---aaaattttgaacctgGATCATTCGTGAGCTGTCAGACAAAAATGC---GTC---------------------------------AGTGAAGAAAAGCGTGTCTAGACAGTTTCTAGGCtaccaaaaattgtttctagGTTACTGAAGATGCTCACCTAGCCAATCTCCATTTGTC-ACTCCTCGACGACTACTAT-ACTGCTCTGCTACTGCACTTCTGCCAGCGACTCCACCT
i cb4.chrX              C 0 I 29
s caeRem4.Crem_Contig0   2477300 341 -  4500979 GAGAGAGTACGTTTCAGTTTGCCAGGCGAAGACATCTATCCACCCCTCTTCCTGAAACGCAGTGGGAAAATCTTCTCATTAGTCTCGC------------GTGTCTGCTCTCGTC------TTGGCAAACACTTCTCT-----CGTTGTGTAATTCTGTGAAATTCAGgcattaaaaaaagagagttc--------tCATCATTGCTATGTGAACAatagaaaatgctgaaaaagaagtattctcgcttt--------aaaattttcagtt---------------------------------tgtataaaaaa------------------------actagaaa----ttttgaGTAGATGTGGATGttc----------tatcaaaatgttgaCATTTTAATGTGTGCAGT-AACTTTATAAAATGAAAC--ATGCCAATTATTCTTTCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879567 233 +  1189296 AAAAGAATACATCTCAGT-----TGGAGATGGCATCTACTCTTCT--------------CTGTGTGAAAATCTTCTCATTAGCCACCCCG---------TGTGCATTCTCAAATA---------GAAGATGCACATTT---------------------------------TCTAGATA--AAAGTAC--------ACTTCTTATTGCAAAGGCAAA---AA------------------------TTTtac------tcaattt---ttc---------------------------------tatatagtGCGTTG-------------------TCAGAACAAA----ATTTTACTATGTgaga--------------------aact-----tcaattttgttTCCAGAGT-TACATTCTGATTTAG-----------------------
i caeSp111.Scaffold626  I 29 C 0
s caePb3.Scfld02_0       4039500 340 +  4147112 GAGAGAATACATTTGAGT-GGCCGGAAGATGGCATCTATACTTCTTTTCTCCGTAAAAGCTATGTGAAAATCTCCTCATTAGCTTCACTA----------GTACACTTTCGAAT----------GCAGATGTACTATT------CTTTTATGTTTCTGTGTG---------TTTGAATAATAAAGTGc--------aagttttgtagaaaagataag---aaaatgtTGGGCAT------TTCATGTGCTGC------GTAGTTT---TTTGActtcacaaaattgaaaaactagttCCAAACGTATATTGGGATTCGGTACTAAAGAA---ATGGTTCAGGAAAAG----ATTTCTTTAATTGGAGTGGCTT------------TCAACT-----ACAATTTCa---cgaaaatgtattttttgtttt-------------------------
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I

a score=-6971.000000
s ce10.chrX              5783210 34 + 17718866 GAGAC--------------CTTTGAATTAAATTGTA--------------AATTGTACATTT
s caeRem4.Crem_Contig0   2477641 61 -  4500979 -GGACTCAAATTAGTTTTTCACAGAGCTGCTCAGTATGCACTTTACAAATGACTCTACCTCt
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    879800 29 +  1189296 -------------------CATTGGACTGAGCAATA--------------AACTCCGCCTCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4039840  3 +  4147112 -----------------------------------------------------------ccg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I
e cb4.chrX              11113035 29 + 21540570 I

a score=-11173.000000
s ce10.chrX              5783244  81 + 17718866 ----------------------------------TT--------ATCCCTGGTCTTATAC----TTTTTCATATATTTTTTTCCTTTTTCATATTGATGCACCGCTCATAAAA--CTATCACATTTTAT
s cb4.chrX              11113064 110 + 21540570 ---TCACCCTTTTCCTTCCTCTT---CATCAGATCC--------ACCCCGtttctttcctggactttttcttttattgacgcctttcttctcactattctattttttttt-----ttcttcttccccgC
i cb4.chrX              I 29 C 0
s caeRem4.Crem_Contig0   2477709 105 -  4500979 ---tcgtttttttctttcactcC---CATTAGATTC--------ACCCcgtttcttcctt----ttctccgTATTCTgctccttttttttccacaaCTCCA-AATCCATT-----CTATTATTCTCCGC
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    879829 114 +  1189296 TTGCCCCTTGGctccttctttttgtatATCAGATCC--------ACTCTTCTTCCATCCT----TTtcccctcttttcttcttactt--ctgcttgtttttctatcatttatTA-TTCTCGTGTCCCGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4039843 117 +  4147112 ttttctcttatttgctcattttc-----tcagATCCCTGCAATTATTCTGACTTGCTGCT----TTGTTTTTATCGATATATTATTTTCCAGCGTGTCATC---TCCTTTAAAACCCCTCCAACCCCgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   290064 1894 -   357190 I

a score=317341.000000
s ce10.chrX              5783325 469 + 17718866  
s cb4.chrX              11113174 516 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2477814 539 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    879943 529 +  1189296  
i caeSp111.Scaffold626  C 0 I 9
s caePb3.Scfld02_0       4039960 505 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   291958 463 -   357190  
i caeJap4.Scaffold17990 I 1894 C 0

a score=-82.000000
s ce10.chrX              5783794 14 + 17718866 GAATTT-------TTTTTGTT
s caeJap4.Scaffold17990   292421 21 -   357190 tgaattaaaaacatttttttt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4040465  0 +  4147112 C
e cb4.chrX              11113690  0 + 21540570 C
e caeSp111.Scaffold626    880472  9 +  1189296 I
e caeRem4.Crem_Contig0   2478353  0 -  4500979 C

a score=-33482.000000
s ce10.chrX              5783808 113 + 17718866 GCAAA------------------------------------CTCACTCTCA---------------------------------------AAAAGTA--------------TATTGTTAAAGTGGAGTACCGAAAGAAAT--------------------------CGGCGATTT--------TGTCTGAAAAAA-------------------------------GACGCAAA--ATGGCCCAAACCTACCGAATTTTGTGTAATTTG
s cb4.chrX              11113690  13 + 21540570 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCAGAG------------------------------------------------------TTTCC-----------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4040465  14 +  4147112 -----------------------------------------------------------------------------------------------------------------TTGATAA-----------------------------------------------------------------TCTGAAA-----------------------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   292442 269 -   357190 acaaaaaatctagaaaattccaagaaaaatAAGTGCACTCCCCCACACTCAGTACTCCTCAGTTCCTCCGGTGATTCATTTATATTTTAGGAAAATATCCAATTTGTCGACTGATGGTGAATCTGAGTACTGAgagcggtggagcgcacttgcgtcGCTCGCGGGACAGCAATATTATTTTCCTGTCGTAAAATATCGGCTATTAAGTTATTAAAACTAACATTTGAACATAAATTATGTTTTAAATTCATAAAAAgcagtaaaatgtg
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    880472   9 +  1189296 I
e caeRem4.Crem_Contig0   2478353   0 -  4500979 C

a score=91.000000
s ce10.chrX              5783921 1 + 17718866 T
s caeJap4.Scaffold17990   292711 1 -   357190 t
i caeJap4.Scaffold17990 C 0 I 149
e caePb3.Scfld02_0       4040479 0 +  4147112 C
e cb4.chrX              11113703 0 + 21540570 C
e caeSp111.Scaffold626    880472 9 +  1189296 I
e caeRem4.Crem_Contig0   2478353 0 -  4500979 C

a score=-13360.000000
s ce10.chrX              5783922 117 + 17718866 TATTACTAATTTATTACTTGTTGATTCGTTGATTGAGATGTTTTTCAGTCAGttttttttcaattttcagaatgtctcattacaaaactggatagttttgggccattttgggtctaa
s cb4.chrX              11113703  30 + 21540570 -------------------------------------------------CAGCTGTTCAGCAATTCT-----AACCTCACT----------------------CAT-----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2478353  26 -  4500979 -------------TTA---------------------------------CTACTGTGCATC-------------CGTCATT----------------------CATT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4040479  17 +  4147112 ------------------------------------------------------------------------TACTTCTTC----------------------CATCCTag------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   292712 149 -   357190 I
e caeSp111.Scaffold626    880472   9 +  1189296 I

a score=-262.000000
s ce10.chrX              5784039 26 + 17718866 aaaagcaaa-gtctccgattatggtac
s caeJap4.Scaffold17990   292861 24 -   357190 aaaggcaaacgcgccctatcgcat---
i caeJap4.Scaffold17990 I 149 C 0
e caePb3.Scfld02_0       4040496  0 +  4147112 C
e cb4.chrX              11113733  0 + 21540570 C
e caeSp111.Scaffold626    880472  9 +  1189296 I
e caeRem4.Crem_Contig0   2478379  0 -  4500979 C

a score=204785.000000
s ce10.chrX              5784065 351 + 17718866 ----tccacctttaatgtacata-caatttAATGTATATAACTAAATT------------------------------------------------------------------------------------TTATTTCAGTTTCAATTGCGGATGTGCTTCTCAAGTACAAAGAAGTCTCAATTGACTTTGTCGTTCGCATAATCTACTTTACAACAAGAGCCCTAGTATATTTGCATTCCGTCGGCGCCATCCACCGAGATATCAAAGCAGAAAATTTGCTTATAAACGGAAATGGTTGGTCTTTCGTT------GCTGATT---TTAGCTAAAACTA------------TTT---TTCAGGAAAACTAAAACTATGCGATTTTGGAAGTGCTACAACAAAGTCCATCGAGATGGCACCACTATCAAATTCCGAAAGATTAGCGGTTCAGGAAGAGGTCATT
s cb4.chrX              11113733 314 + 21540570 --------------------------------------------------------------------------------------------------------------------------------------TTTCCAGTCTCAATAGCCGATGTCCTTTTGAAGTACAAAGAGGTAGCCGTCGACTTTGTCGTACGCATAATTTACTTTACGACACGAGCATTGGTCTACTTGCACTCTAATGGAGTCATCCATCGGGATATAAAGGCTGAGAATCTGCTCATCAACGGAAATGGTTAGCTTTC----------TTCCATT---TCCGATTCAATTAGTCATTGATCCtttt---tttAGGAAAGCTCAAATTGTGTGATTTTGGAAGTGCAACAACGAAGTCCATCGAGATGGCACCCCTTTCGAATTCGCAGAGATTAGCTATTCAAGAAGAGGTaaca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2478379 334 -  4500979 ---------------------------------Atgtac----------------------------------------------------------------------------------------------attttcagtttccataGCAGACGTCTTGATGAAGTACAAAGAAGTGGCCGTTGACTTTGTCGTCCGCATTATTTATTTCACTACTCGAGCCTTGGTCTACTTGCACTCTAATGGAGTTATCCACCGGGATATAAAAGCAGAAAATCTTCTCATCAACGGAAATGGTTGGTTTTCTCTTCCCACTTTTCATTAGCTTCGATTCAATTAGTCATGGATCCCTTC---TCCAGGCAAACTAAAATTGTGCGATTTCGGAAGTGCAACGACTAAATCGATTGAAATGGCACCACTTTCAAATTCAGAGAGACTAGCTGTTCAAGAAGAGGTACGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    880481 332 +  1189296 ----tctgcC--------------CCtattaaaatatat---------------------------------------------------------------------------------------------ttctttcagtttcaatagCAGACGTTCTTCTCAAATACAAAGAAGTTGCCATTGATTTTGTTGTCCGTATAATCTATTTTACAACACGAGCTTTAGTTTATTTGCATGCTCACGGAGTTATTCATCGCGATATAAAAGCAGAGAATCTTCTCATTAACGGAAATGGTTTGTTTTCTATCCA----ACCCGCT---TCcgattcaattattt---------tct---ttcagggaaattgaaattgtgtGATTTCGGAAGTGCAACAACAAAATCCATTGAGATGGCTCCGCTTTCAAATTCAGAACGATTGGCGATACAAGAAGaagtaa--
i caeSp111.Scaffold626  I 9 C 0
s caePb3.Scfld02_0       4040496 322 +  4147112 ------------------------cctttca------------------------------------------------------------------------------------------------------tttttcagtttcaatagcAGACGTCCTCGTGAAGTACAAAGAAGTAGCTCTGGATTTTGTTGTCcgaataatttattttacaACACGTGCATTAGTTTATTTGCACTCTAACGGTGTTATCCATCGAGATATAAAAGCAGAGAATCTTCTCATCAACGGAAATGGTTGGTActcc-tccactt-cttcttt---tccgattCAATTATCTG--------TTT---TTCAGGAAGATTGAAATTGTGTGATTTCGGAAGTGCAACAACAAAATCAATCGAGATGGCTCCTCTCTCAAACTCTGAAAGATTAGCGATCCAGGAAGaggtgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   292885 443 -   357190 tctctgcgtctccacagtgcagagcgttctgCCAAAtctagctaaacgcgtgcaaaaatggggACGCAGAGACACGAAAAATGCACGCGTTGCTAAGAAAAAATCCATGCTCGCAATAAATACTTACTTGAAAATGTTCAGTTTCCATTGCGGACGTCCTTCTAAAGTACAAAGAGGTCGCCGTGGATTTCGTCGTCCGAATCATCTACTTCACTACACGAGCATTGATTTATTTGCACTCTAACAATGTTATACATCGAGATATAAAGGCGGAAAATCTGTTGATCAATGGAAATGGTGAGTCTTTTC--------TCTGATC---TTGACAAcaatttgt----------tttaaatttagCCAAACTGAAGCTGTGCGATTTCGGAAGTGCAACAACAAAATCGGTGGACATGGCGCCGCTTTCAAACAGCGAAAGATTGGCCATTCAGGAAGAGGTAATT
i caeJap4.Scaffold17990 C 0 I 498

a score=-12491.000000
s ce10.chrX              5784416 31 + 17718866 C---CGAAATAAATTTTA---AATGAAATTG--------AAATCT-------
s cb4.chrX              11114047 35 + 21540570 ttgaagaaaaaagaaagagacaATAGTGAtg----------gatg-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2478713 34 -  4500979 T-----------GATTGATCCAACGGAAATGCATTCAACAAgatg-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    880813 31 +  1189296 -------------tttgaaaaatgaaaaaca--------agcaTAACCtcat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4040818 34 +  4147112 a---caaaacaacggtgtaacaaaaaaaaca--------aagata-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   293328 498 -   357190 I

a score=227756.000000
s ce10.chrX              5784447 250 + 17718866 A-ATTTTCAGATGTTCAAATACACAACACCTATCACCCGATCCCCAGAAGTTTGTGATGTCTACTCAAATTGGCCTATCGGAAAACAACAAGACAACTGGGCAATGGGGTGTTTGATCTATTTTGTTGCGTTTGGAGAGCATCCATTTGATGGATCAGCGCTGGCAATTATCAACGGAAAGTACAAGAAGCCACCACCGGTTCAGCAAAACCAGTTATCAGCGTTTGCAGATTTAATTGGTAAGGAGTTTT
s cb4.chrX              11114082 247 + 21540570 a-aatttcagatgttcaagTACACAACACCCATTACCAGATCTCCGGAAGTGTGTGACGTGTATTCAAACTGGCCGATTGGAAAGCAACAAGACAATTGGGCCATGGGATGTTTGATATATTTTGTATGTTTTGGAGAGCATCCATTTGACGGATCAGCCCTTGCAATTATCAATGGAAAATACAAGAAGCCACCTCCAGTTCAACAAAATCAATTGTCAGCGTTCGCCGAATTgatcagtg---agtttt
i cb4.chrX              C 0 I 432
s caeRem4.Crem_Contig0   2478747 248 -  4500979 agaatttcagatgttcaaGTACACGACGCCTATCACCAGGTCTCCGGAAGTGTGTGATGTCTACTCAAACTGGCCAATCGGGAAACAACAAGACAATTGGGCAATGGGTTGTCTGATATACTTTGTCTGTTTTGGAGAGCATCCGTTTGATGGAGGAGCTCTGGCAATTATCAATGGAAAGTACAAAAAGCCTCCGCCAGTACAGCAGAACCAACTTTCTGCATTCGCTGACCTCATCAGTA---AGtttc
i caeRem4.Crem_Contig0  C 0 I 78
s caeSp111.Scaffold626    880844 247 +  1189296 a-aatttcagatgttcaAATACACGACACCAATCACCAGGTCCCCAGAAGTTTGTGACGTCTACTCGAATTGGTCAATAGGAAAACAACAAGATAATTGGGCGATGGGTTGTCTCATATACTTTGTATGCTTTGGAGAGCACCCATTCGATGGCGGTGCATTAGCAATTATCAAcggaaaatacaaaaaaccgCCACCAGTTCAACAAAACCAACTTTCCGCGTTCGCTGATCTTATTGGTA---AGATTT
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       4040852 247 +  4147112 a-gATTTCAGATGTTCAAATACACAACACCAATCACCAGATCTCCTGAAGTGTGTGATGTCTACTCCAACTGGTCGATTGGAAAACAACAAGACAATTGGGCGATGGGATGCTTGATATATTTCGTATGCTTTGGTGAACATCCGTTTGACGGGGGAGCATTGGCAATTATCAATGGGAAGTATAAGAAGCCACCGCCGGTGCAAATGAACCAGCTTTCCGTGTTTGCCGATCTTATCGGTA---ATAGGA
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17990   293826 250 -   357190 A-GTGTTCAGATGTTCATGTACACTACGCCGATCACACGATCTCCAGAAGTTTGCGATGTGTACTCAAACTGGCCAATTGGAAAACAACAAGACAACTGGGCCATGGGCTGTCTCATCTATTTTGTGTGCTTTGGAGAGCATCCGTTTGATGGCTCGGCACTAGCGATAATCAACGGAAAGTACAAAAAGCCACCGCCGGTGCAGTTTAATCAACTTTCTGCGTTTGGAGACCTTATTGGTATGTAttttt
i caeJap4.Scaffold17990 I 498 C 0

a score=-9280.000000
s ce10.chrX              5784697 43 + 17718866 CTGCTGG--------GCGTAAAAATAATAAATAAAGAAAT-----ATAAACCCAAC
s caeRem4.Crem_Contig0   2479073 26 -  4500979 TTTCTG-------------------AATAGAAAAGTCAGTCAAAC-----------
i caeRem4.Crem_Contig0  I 78 I 14
s caeSp111.Scaffold626    881099 21 +  1189296 TTGctg-------------------atttgaaaactcttt----------------
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       4041114 21 +  4147112 TAGctg-------------------aattaataaaaattt----------------
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   294076 40 -   357190 ttGATGGTATATAAATCGCACGCGTACTatccaatatttt----------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11114329 432 + 21540570 I

a score=305799.000000
s ce10.chrX              5784740 671 + 17718866  
s cb4.chrX              11114761 699 + 21540570  
i cb4.chrX              I 432 C 0
s caeRem4.Crem_Contig0   2479113 709 -  4500979  
i caeRem4.Crem_Contig0  I 14 C 0
s caeSp111.Scaffold626    881120 685 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4041135 691 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   294116 691 -   357190  
i caeJap4.Scaffold17990 C 0 I 13

a score=3681.000000
s ce10.chrX              5785411 8 + 17718866 TGGTAAGA
s cb4.chrX              11115460 8 + 21540570 AAGTAAGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2479822 8 -  4500979 TAGTAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    881805 8 +  1189296 AAGTGAGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4041826 8 +  4147112 AAGTGAGT
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17990   294807 13 -   357190 I

a score=-26125.000000
s ce10.chrX              5785419  94 + 17718866 ------TTTAGGACACTG--------------------AAAACTGCGGAAAGCAATTGAACAGCAATTGAATTCCAAACGAATC--------------------CTATGTCATTTAAAAGGGGACCTTCAA-----------------ACCAGATTA-------------------------------------------
s cb4.chrX              11115468  55 + 21540570 TTTTAGTTTGGAAGC--G--------------------AAAACTTaacaaca-------------------------acaacac----------------------------------------------------------------aacaaATCacct------------aaaatt----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2479830   9 -  4500979 GGtt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaata----------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4041837 187 +  4147112 ------TTTGGAAAA--GATTCTTAGGCGATGTATTgtaaaattgaacaaaactaTT-----GCACTGGCTTACTGTACAAAACGATGGGAAGCCAAGTTTGAGATATGtcaattgaatttcgaatttgaatGTATGCCTcctatgaaaatgaataatctgAAAACGATTGCAAAATATCTTGAATTACAAAACACATGA
i caePb3.Scfld02_0      I 3 I 196
e caeJap4.Scaffold17990   294807  13 -   357190 I
e caeSp111.Scaffold626    881813   0 +  1189296 C

a score=-658.000000
s ce10.chrX              5785513 42 + 17718866 AAATTTTTGATG------------------------ATTTGTACGGTGCTTAGATG---------------AAGGCAATAA
s cb4.chrX              11115523 81 + 21540570 caatttttggagggttactggaaagctgaaaatataattttcgtGGTAcgtagatttcaaaaatgatgggATACCCAAcaa
i cb4.chrX              C 0 I 112
s caeRem4.Crem_Contig0   2479839 35 -  4500979 aaagttttgtgG------------------------ATATCCGTGATAC----------------------TAATCAATAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4042024 196 +  4147112 I
e caeJap4.Scaffold17990   294807 13 -   357190 I
e caeSp111.Scaffold626    881813  0 +  1189296 C

a score=-1998.000000
s ce10.chrX              5785555 90 + 17718866 GGCTACTTCCTGTCAAAACTTGGAAACTTTCTCCCAAACATTCTGAATATATTGAAAGCTTTTCTGTGAAAATTTTGCAAGTGTCTGACA
s caeRem4.Crem_Contig0   2479874 26 -  4500979 AAC------------------GGAATCTTT---------------------------GATTTACTTTCAAA-------------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4042024 196 +  4147112 I
e caeJap4.Scaffold17990   294807 13 -   357190 I
e cb4.chrX              11115604 112 + 21540570 I
e caeSp111.Scaffold626    881813  0 +  1189296 C

a score=46.000000
s ce10.chrX              5785645 4 + 17718866 ACAT
s cb4.chrX              11115716 4 + 21540570 GCCT
i cb4.chrX              I 112 C 0
e caePb3.Scfld02_0       4042024 196 +  4147112 I
e caeJap4.Scaffold17990   294807 13 -   357190 I
e caeSp111.Scaffold626    881813 0 +  1189296 C
e caeRem4.Crem_Contig0   2479900 0 -  4500979 C

a score=-4409.000000
s ce10.chrX              5785649 17 + 17718866 TATATGTTTTTGA--GCAG----------
s cb4.chrX              11115720 22 + 21540570 -------TGTATAATTCAGAGATTTTAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2479900  7 -  4500979 ---------------TCAAGCA-------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4042220 21 +  4147112 TATATAATGTTCAGTTCAAAG--------
i caePb3.Scfld02_0      I 196 C 0
e caeJap4.Scaffold17990   294807 13 -   357190 I
e caeSp111.Scaffold626    881813  0 +  1189296 C

a score=-6256.000000
s ce10.chrX              5785666 60 + 17718866 ---CTACGAA-TAATTTCCAATATATTTCCCTATGTTAAAAA---------TAATTTGT-CTTCAGCTGAGCAC
s cb4.chrX              11115742 49 + 21540570 AGTCTACTGA-TTAATG------TATT---------TCAAGT---------TCCCTTCAATTTCAGCGGAACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2479907 29 -  4500979 AAACGACttg-ttaat--------------------------------------------tttcagctcatcat
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    881813 47 +  1189296 ---CGACGAA-TTATtg----tatatt---------taaaaa---------ttatctcT-ATTCAGATGAAcat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4042241 69 +  4147112 ---CTTCAAAGTTACTGAAAACATACT-CACTCCGCTAagaaagtttaattttttttca-ttacagaTGAACAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   294807 13 -   357190 I

a score=75286.000000
s ce10.chrX              5785726 114 + 17718866 AAACCAGAGGTACGATCCCAATCTTCACGAGACTTGTTTGACTTTGACGACCTGATGCTCCGACACACGACACCTTCCGCCGAATCTTCTCAAGCTGGTACGGTTTGTTCCTCT
s cb4.chrX              11115791 102 + 21540570 AAAACTGAAGTCCGCTCCCAATCTTCACGAGACCTATTCGATTTTGACGATTTGATGCACAGGCACACCACACCTTCAACAACATCATCTCAATCTGGTAAG------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2479936 103 -  4500979 AAAACAGAAGTTCGATCACAGTCTTCCCGTGATCTGTTCGACTTCGATGATCTGATGCTAAGACACACAACACCCACAACTTCGTCTTCACAATCTGGTAAGA-----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    881860 103 +  1189296 aaaacagaaatacGGTCACAATCATCACgtgatttatttgattttgatgatCTGATGCATCGACATACAACTCCTTCGGCAGCATCTTCTCAATCGGGTATGA-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4042310 112 +  4147112 AAAACAGAAGTCCGATCTCAATCCTCAAGAGACCTATTTGATTTTGACGACTTGATGCTCAGACACACTACTCCCTCAGCTGCATCTTCACAATCTGGTACGGTCTAATCAC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   294820 114 -   357190 AAAACAGAAGTTGGCTCTCAATCCTCTAAAGATTTGTTTGATTTTGACGATTTGATGCTCCGACACACCAATGTCTCGTCAGGATCTTCACAATCTGGTatgtcttttttattt
i caeJap4.Scaffold17990 I 13 I 2539

a score=4086.000000
s ce10.chrX              5785840 82 + 17718866 ACGCAGTTATCATTT---GCTATGTATTC------ATT--TTGTTACAACC--TCCTCTTCATGAATCACTA------AATGATTCATCAAAGGAATCAGC
s cb4.chrX              11115893 52 + 21540570 ------------------ATTCT------------AGT--ATATTACAACC--TTACACAAATGAATCACTA-------------CATAGATA--ACAAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2480039 94 -  4500979 ---ACAAAATATCTCCTTATTCTCTACTTTTGTACATT--ATATTACAACT--TTCGATAAATGAATCATTCCGCTAAAATGATTCATCAATAGGATCAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    881963 83 +  1189296 ---TAAAAACAGTTT---ATTTA------------ATTCATTGTTACAATTACTATCtaaaatgaatcattcaaCTGGAATGATTCATCAATAGGATCAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4042422 71 +  4147112 ---TAGAAATAGCTT---TCTAC------------AAT--TTATTACAACT---------AATGATTCATTTCGCTAAAATGATTCATCAATAGGATCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   294934 2539 -   357190 I

a score=215654.000000
s ce10.chrX              5785922  793 + 17718866  
s cb4.chrX              11115945 1020 + 21540570  
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0   2480133  765 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626    882046  742 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4042493  740 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   297473  780 -   357190  
i caeJap4.Scaffold17990 I 2539 C 0

a score=-10053.000000
s ce10.chrX              5786715 38 + 17718866 TTAAAAAAAAAAGAAGTTTGTAAAAAACTACAA-------------------ACATA
s cb4.chrX              11116988 51 + 21540570 -ccgaaaaactaggatttttcgaaaaattctgcgaaatcaaagtttttcatc-----
i cb4.chrX              I 23 I 14
s caeSp111.Scaffold626    882788 13 +  1189296 TACAAGAA--------------------TCTGT------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4043233 20 +  4147112 tacaagaaa-------------gaaaactgCGT------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   298253 21 -   357190 ----AGAAATAGG------TTGGAAAACTAT--------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2480898 19 -  4500979 I

a score=260930.000000
s ce10.chrX              5786753 429 + 17718866  
s cb4.chrX              11117053 517 + 21540570  
i cb4.chrX              I 14 C 0
s caeRem4.Crem_Contig0   2480917 432 -  4500979  
i caeRem4.Crem_Contig0  I 19 C 0
s caeSp111.Scaffold626    882801 486 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4043253 521 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   298274 408 -   357190  
i caeJap4.Scaffold17990 C 0 I 1858

a score=-31485.000000
s ce10.chrX              5787182 241 + 17718866 GTTTCAT---------------------------GTTCATTTA--------CTTTTCACTTCTGTGA--TTTTATTTA----ACAACTTCGATTTTAAATCTATGGTT-----ATCTGGTGTTTTGTCATTTAAAA----------CA-------TTTTAAAGTACACGTTTT---CATTGAATGAATAACATGCATATCACAATCG----GAATTGTTTTTTTTTTTCAT----------------------------TCTCTC----------------------------------------------TGTGTA-CTTTCAAGCCAGACAAACATTACGCACGTATTCAGAAAAAAAGTGAAAAAAAAACGGTTTATGCAAAT
s cb4.chrX              11117570 201 + 21540570 GTTTCTT--------------------------------------------CATTTCTAATCATtga--tttgtcttt-------ttttctattt---ggtAACTGTC-----AG----TTTTTAATTCTCTGAAA----------TA-------TTTATTGGGAAAAGTGTAAAGTTTTGCT--TCTGAATTCTATTCTGTTATCGC---GATTTTAAATTT-ATCCTAc-----------------tgtaaacattttt--------------------------------------------------catttg-ttgtCAAACTT-----------------TATTTATTTG------------CAAACCGCTTATGCAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2481349 294 -  4500979 gtttctttcaatttcctttATGGTTCGCAAACgtcttctttca--------cttttttaatcattga--tttgtctac-------ttttcagttt-----ttcttgag-----ag--gttttttgGTAATGTAAAG----------TAAGAACCGTTTATTGGTTATCATCTTAAAGCTTGGT--GTTTAAATTTATGTTGATATGgtataaattttatatttcataGTACGTTTCAGAATACGTGtttgcaaactttttttttt-------------------ttgcaagcgatga--------------tgttta-tttttattttt-----------------tgtttacttgCCGATCAAACGACAAACCGTTTATGCAAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    883287 269 +  1189296 gtttctt-------------------------tgattctttcctactcttttttcttggtttacaaacgtctttcttc-------atttctctttcacaTTGATTAATctataa-----ttttcaagttttcacaaaaaagagaagtgat-----TATACTGATTATGGTTGT---CCCTGGT--AATGTAATGTATA---------------------TTTTGATCGTAT----------aaatttcttccaaaatcactattttcgaa-----gaaacaaGTTTGCTTacgtttt--------------tgttta-ttttgataCTA-----------------TGTTTACATGCGGCAGAAGC--AAAACCGTTTATTCAAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4043774 283 +  4147112 gtttctt----------------------------ttcattcc--------ttttttggtttacaaacgtctttcttcttccgaattttcacttttttaatcattgat-----a-----ttttaactttttttcaa----------tgat-----tctgCAAAATAAGTTCTT---TCTTATC----TGAAATATACACCACt--------ggcttgattttttttctcat----------atatGCTGTAAAATATAaacgttttctgaaatctaAAACACGTTTGCAAACACTTTTCCTTGTTatgaaatgtttatttttgatactA-----------------TGTTTACCGAAAGTATAAGCCGCAAACCGTTTATGCAAAT
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17990   298682 1858 -   357190 I

a score=-4444.000000
s ce10.chrX              5787423 17 + 17718866 --------GTATCAGAATACCATGC
s cb4.chrX              11117771 23 + 21540570 TTGAAATCGCACAAAAAACCTGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2481643 21 -  4500979 TTG---CCGACATAGAAACCCGTA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    883556 10 +  1189296 ------TCGCCGATAA---------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4044057 10 +  4147112 I
e caeJap4.Scaffold17990   298682 1858 -   357190 I

a score=13461.000000
s ce10.chrX              5787440 108 + 17718866 AAACCAGCTGTAGtattaaaaatttgttatatatattttttaCTTTCAC------TCTCTAT---CTATTTTTTTCTGTT-----------------TTTT------------GTCGGCCTTGAACTTGAACTACCTTTTTCCAAT
s cb4.chrX              11117794 129 + 21540570 -AACCAGCTGTTGTACTTTC------ACGTATCGCAATTTCACTTTTACAGccaattcttga-tttttttttttccaattgactagtcagttttcaatttccccTCGAGAGAAAGCGCCCTTGAACTTTTCT---------CCAAT
i cb4.chrX              C 0 I 58
s caeRem4.Crem_Contig0   2481664 111 -  4500979 AAACCAGCTGTCGTATTATA------TCGT---GAAtttttacttttac------tttttaa------tattttccaact---catttaatct----tttttCCTC-------AACGCCCTTGAACTACTCTTACCTCTTGCCAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    883566 116 +  1189296 AAACTGGCTGTTGTACTAT----------TTTCTAGATTATACTTTTac------tttttccatctttttttttccgaat---tcaatattcg----ttttcattc-------CGCGCCCTTGAACTACGTTCACCTCTTGCCAGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4044067 104 +  4147112 AAACAGGCTGTTGTACTAT----------TTTTGCG----tgctttcac------tttttca------tatttctccaAT---CCAATAGTCG----TTTT--TTC-------CGCGCCCTTGAACTACTCGTAACTCTTGCCAAC
i caePb3.Scfld02_0      I 10 C 0
e caeJap4.Scaffold17990   298682 1858 -   357190 I

a score=3759.000000
s ce10.chrX              5787548 55 + 17718866 CAT-GAAGCA-ATGAAGCGAGCGTGG---ATTTTTTTGTTTTCCGCTGTGA-TTTGCTGTT
s caeRem4.Crem_Contig0   2481775 50 -  4500979 CAT-AAAAAACATGACACCAATTTAGTGTCGAATTTAGTGTACGGATGCGA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    883682 47 +  1189296 CGCaaaaaaaCATGACACCAATTTAG-----------TTTTTCGGATGCGA-TCCGCAG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4044171 58 +  4147112 CAT-AAAAAACATGACACCAATTTAGcgtcgttttcatttttcggatgCGATTTCCCAG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298682 1858 -   357190 I
e cb4.chrX              11117923 58 + 21540570 I

a score=2107.000000
s ce10.chrX              5787603 11 + 17718866 TCTATCATCTC
s cb4.chrX              11117981 11 + 21540570 TCCGCCGTATC
i cb4.chrX              I 58 C 0
s caeRem4.Crem_Contig0   2481825 11 -  4500979 TCCACCGTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    883729  4 +  1189296 -------TATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4044229  4 +  4147112 -------TATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   298682 1858 -   357190 I

a score=246372.000000
s ce10.chrX              5787614 596 + 17718866  
s cb4.chrX              11117992 605 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2481836 579 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 2
s caeSp111.Scaffold626    883733 580 +  1189296  
i caeSp111.Scaffold626  C 0 I 20
s caePb3.Scfld02_0       4044233 587 +  4147112  
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   300540 643 -   357190  
i caeJap4.Scaffold17990 I 1858 C 0

a score=-8983.000000
s ce10.chrX              5788210 33 + 17718866 GCGTCCTTGTAAACCTAAGCAATCTTTCACAAT--
s cb4.chrX              11118600 22 + 21540570 AAACCCAT-TAAACGTGTAATAT------------
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2482417 22 -  4500979 ttgtttat-taaaaagaaaatgt------------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       4044822 30 +  4147112 caatctg---aaactttcactttctatttcaat--
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   301183 31 -   357190 ----CCATGCAAATGTGAgataaaaatcaacattt
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    884313 20 +  1189296 I

a score=97124.000000
s ce10.chrX              5788243 110 + 17718866 TTTCAGTTTCAATTGATGACATTATATCCGGCGCATTAAGTCTCGTGAGACCGATCTTTGACACTTCAAAACCTATTCAAAACGAAGGAATGCTTAGAAAACCAGTGAGT
s cb4.chrX              11118622 110 + 21540570 TTACAGTTTCTATTGATGATATCATATCAGGAGCTTTAAGTTTAGTGCGACCAATTTTTGACACATCGAAACCTATTCAAAATGAGGGAATGCTAAGAAAACCGGTAAGT
i cb4.chrX              C 0 I 37
s caeRem4.Crem_Contig0   2482439 110 -  4500979 ttttagtaTCAATCGATGACATCATATCAGGAGCACTTAGTTTAGTCAGACCTATTTTCGACACGTCGAAGCCAATTCAAAATGAAGGAATGCTAAGGAAACCCGTGAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    884333 110 +  1189296 TTTCAGTCTCCATTGATGATATTATCTCCGGAGCTTTGAGTTTAGTCAGACCAATCTTCGATACATCAAAACCAATTCAGAATGAAGGAATGCTCAGGAAACCTGTAAGT
i caeSp111.Scaffold626  I 20 C 0
s caePb3.Scfld02_0       4044852 110 +  4147112 ttttagtttcaattgACGATATTATATCCGGAGCGTTGAGTTTAGTGCGACCAATTTTCGATACTTCTAAGCCGATTCAAAGAGAAGGCATGCTGAGAAAACCTGtgagt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   301214 110 -   357190 tttcagTGTCAATAGATGATATTATCTCCGGTGCTTTGAACCTGGTTAGACCCATTTTTGACACCTCAAAGTCTATCACAAATGAGGCAGTTCTTAGAAAACCTGTAAGT
i caeJap4.Scaffold17990 C 0 I 1110

a score=-829.000000
s ce10.chrX              5788353 1 + 17718866 T-
s caeRem4.Crem_Contig0   2482549 1 -  4500979 -G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    884443 1 +  1189296 T-
i caeSp111.Scaffold626  C 0 I 26
e caePb3.Scfld02_0       4044962 0 +  4147112 C
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732 37 + 21540570 I

a score=182.000000
s ce10.chrX              5788354 2 + 17718866 AA
s caeRem4.Crem_Contig0   2482550 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 I 23
e caePb3.Scfld02_0       4044962 0 +  4147112 C
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732 37 + 21540570 I
e caeSp111.Scaffold626    884444 26 +  1189296 I

a score=0.000000
s ce10.chrX              5788356 538 + 17718866  
e caePb3.Scfld02_0       4044962   0 +  4147112 C
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732  37 + 21540570 I
e caeSp111.Scaffold626    884444  26 +  1189296 I
e caeRem4.Crem_Contig0   2482552  23 -  4500979 I

a score=-108.000000
s ce10.chrX              5788894 6 + 17718866 ACGCGT
s caePb3.Scfld02_0       4044962 6 +  4147112 atgaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732 37 + 21540570 I
e caeSp111.Scaffold626    884444 26 +  1189296 I
e caeRem4.Crem_Contig0   2482552 23 -  4500979 I

a score=-1089.000000
s ce10.chrX              5788900 22 + 17718866 AAAAATTAGTTCCAAATAATAC--
s caeRem4.Crem_Contig0   2482575 19 -  4500979 -----agaaattagaaaagaaaac
i caeRem4.Crem_Contig0  I 23 C 0
s caePb3.Scfld02_0       4044968 20 +  4147112 aaaaaacaactttgaataaa----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732 37 + 21540570 I
e caeSp111.Scaffold626    884444 26 +  1189296 I

a score=1134.000000
s ce10.chrX              5788922 5 + 17718866 ATTGA
s caeRem4.Crem_Contig0   2482594 5 -  4500979 gatga
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626    884470 5 +  1189296 attta
i caeSp111.Scaffold626  I 26 C 0
s caePb3.Scfld02_0       4044988 5 +  4147112 attga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301324 1110 -   357190 I
e cb4.chrX              11118732 37 + 21540570 I

a score=-1615.000000
s ce10.chrX              5788927 3 + 17718866 AAT
s cb4.chrX              11118769 3 + 21540570 aat
i cb4.chrX              I 37 C 0
s caeRem4.Crem_Contig0   2482602 2 -  4500979 AA-
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    884475 3 +  1189296 AAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4044993 1 +  4147112 a--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   301324 1110 -   357190 I

a score=333118.000000
s ce10.chrX              5788930 635 + 17718866  
s cb4.chrX              11118772 573 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2482604 634 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    884478 614 +  1189296  
i caeSp111.Scaffold626  C 0 I 33
s caePb3.Scfld02_0       4044994 757 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   302434 643 -   357190  
i caeJap4.Scaffold17990 I 1110 C 0

a score=-1387.000000
s ce10.chrX              5789565 2 + 17718866 -AT
s cb4.chrX              11119345 1 + 21540570 -A-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483238 2 -  4500979 -AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   303077 2 -   357190 aa-
i caeJap4.Scaffold17990 C 0 I 48
e caePb3.Scfld02_0       4045751 0 +  4147112 C
e caeSp111.Scaffold626    885092 33 +  1189296 I

a score=-8225.000000
s ce10.chrX              5789567 44 + 17718866 GGTTTTCTTTTTCTCATTTTAGAACAATGAGAAT---ATTATTAAC-A
s cb4.chrX              11119346 30 + 21540570 -----------------ACTAGATCAcgagaaatcagaattttaacA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483240 38 -  4500979 GATCAATTT-------TAATTGGACACACATAATCA-ACTGTTAAC--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4045751 34 +  4147112 ----aaagt-------tctgaaattatttttgagtt-tcttttatc--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   303079 48 -   357190 I
e caeSp111.Scaffold626    885092 33 +  1189296 I

a score=-925.000000
s ce10.chrX              5789611  4 + 17718866 ------ATTT
s cb4.chrX              11119376 10 + 21540570 TCGCTCGATT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483278  3 -  4500979 -------ATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    885125  4 +  1189296 ------attt
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       4045785  4 +  4147112 ------tttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   303079 48 -   357190 I

a score=81953.000000
s ce10.chrX              5789615 107 + 17718866 CAGAAGCGCTGGGCGGATTATGATACCCCATCTATTACCCCGGTGATTCCCGTGCAAACAGCACACGGATCCAAAACGTGGAGTAGCAACCCTGAGACAAG--TATGTT
s cb4.chrX              11119386 107 + 21540570 CAGAAACAATGGGCTGATTACGACAGCCGTGCTGCAGCTCCAACCATCACTATGCAAACAGCACACGGCTCAAAAACTTGGAGCAGTAATCCAGAATcaagtttttt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483281 105 -  4500979 AAGAAACGATGGGCTGATTATGATAGCCGTGCAGTTGCACCAGTAATCACCATGCAAACAGCACATGGCTCAAAGACATGGAGCAGTAATCCAGAGACGAG--TAGG--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    885129 107 +  1189296 cagaaaagatgGGCAGATTACGATAGTCGGGCTGCTGCGCCAGCCATCACTGTGCAAACTGCACATGGATCGAAAACATGGAGCAGTAATCCGGAAACTAG--TTAgtt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4045789 107 +  4147112 taGAAACGGTGGGCGGACTATGATAGTCGAGCAGTTGCACCTGCAATTACAATGCAAACAGCTCATGGTTCTAAAACATGGAGTAGCAATCCGGAGACAAG--TAAACT
i caePb3.Scfld02_0      C 0 I 19
s caeJap4.Scaffold17990   303127 107 -   357190 CAGAAACGTTGGGCTGATTACGATAGCCGCGCATCAGCTCCAGCTATCACTATGCAAACGGCTCACGGCTCAAAAACGTGGAGCAGCAATCCGGAAACAAG--TATACC
i caeJap4.Scaffold17990 I 48 C 0

a score=-3828.000000
s ce10.chrX              5789722 16 + 17718866 TATTTCAAGTAAGCTT--
s cb4.chrX              11119493 11 + 21540570 -----taattaatcAA--
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2483386 11 -  4500979 -----GAAATAGTTAT--
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    885236 16 +  1189296 ggtttcaaaaaatgat--
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   303234 16 -   357190 --AAGGAGAGGATAATTC
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4045896 19 +  4147112 I

a score=58721.000000
s ce10.chrX              5789738 97 + 17718866 TTCATTATATTTAAA----ATATTTACAGAATCATTACAACCGCTGGAAATCAGAAATGATCTTGTCTCTAGCTGGACTCAAATGCCATTTTTCGCGCCTC
s cb4.chrX              11119509 98 + 21540570 ---ATTTAATTTACAAGTTTTTAATTCAGAATCACTCCAGCcacttgaaattcgaaatgatTTGATTTCAAGTTGGACACCGATGCCATTCTTCGCACCAC
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2483402 96 -  4500979 -----TCTATATAGATTCATGTATTTCAGAATCACTTCAACCATTGGAAATCCGGAATGACTTGATTTCAAGCTGGACTCCTATGCCATTTTTCGCACCAC
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    885252 92 +  1189296 ttcactTTGT---------ATTCATACAGAGTCCCTACAACCATTGGAAATACGAAATGATCTGATTTCAAGTTGGACGCCAATGCCATTCTTCGCTCCAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4045915 98 +  4147112 ttcattctcttcaa---TGACTTTTCCAGAATCACTGCAACCTCTAGAAATTCGAAACGATTTGATTTCAAGTTGGACACCGATGCCGTTTTTTGCACCTC
i caePb3.Scfld02_0      I 19 I 2
s caeJap4.Scaffold17990   303250 95 -   357190 ----cccaaaacaaa--gaaaaatttcagaagccCTGCAATCGCTCGAAATTCGAAATGACTTGGTCTCCAGTTGGACGCCACTGCCATTCTTCGCCCCAC
i caeJap4.Scaffold17990 C 0 C 0

a score=626.000000
s ce10.chrX              5789835 2 + 17718866 CA
s cb4.chrX              11119607 2 + 21540570 CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483498 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    885344 2 +  1189296 CA
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   303345 2 -   357190 CA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4046013 2 +  4147112 I

a score=202435.000000
s ce10.chrX              5789837 473 + 17718866  
s cb4.chrX              11119609 463 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483500 459 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    885346 448 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4046015 472 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   303347 629 -   357190  
i caeJap4.Scaffold17990 C 0 I 119

a score=-5961.000000
s ce10.chrX              5790310 6 + 17718866 GAAAT-G
s cb4.chrX              11120072 2 + 21540570 CA-----
i cb4.chrX              C 0 I 6
s caeRem4.Crem_Contig0   2483959 2 -  4500979 tg-----
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold626    885794 5 +  1189296 aaaat--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4046487 6 +  4147112 TGGAAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   303976 119 -   357190 I

a score=0.000000
s ce10.chrX              5790316 1 + 17718866 A
e caePb3.Scfld02_0       4046493 0 +  4147112 C
e caeJap4.Scaffold17990   303976 119 -   357190 I
e cb4.chrX              11120074 6 + 21540570 I
e caeSp111.Scaffold626    885799 0 +  1189296 C
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=-1321.000000
s ce10.chrX              5790317 16 + 17718866 AAAAC--------TTACTGAACGC
s cb4.chrX              11120080 20 + 21540570 GAAACCAATTGTATTGCCGT----
i cb4.chrX              I 6 C 0
s caeSp111.Scaffold626    885799 15 +  1189296 ---------agtttttctgaacaC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4046493  0 +  4147112 C
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=364.000000
s ce10.chrX              5790333 4 + 17718866 AAAA
s cb4.chrX              11120100 4 + 21540570 AAAA
i cb4.chrX              C 0 I 100
e caePb3.Scfld02_0       4046493 0 +  4147112 C
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeSp111.Scaffold626    885814 0 +  1189296 C
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=0.000000
s ce10.chrX              5790337 82 + 17718866 TTGGAAAAAAGAAATACTCTGGTTAATGGTCCTGTTTGGAAAATGTGTGATTTGATTTGGACAATAGGGCAAATTTGCATAT
e caePb3.Scfld02_0       4046493  0 +  4147112 C
e caeJap4.Scaffold17990   303976 119 -   357190 I
e cb4.chrX              11120104 100 + 21540570 I
e caeSp111.Scaffold626    885814  0 +  1189296 C
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=-140.000000
s ce10.chrX              5790419  93 + 17718866 CGATGTTTTTTTCCAAATCTGTTAGTGGAAGAACTGACTAATTGACACATTGTGACTGTATGTATATAAAAATTTT-------GATACTTCTGG-----------TTTTTA
s cb4.chrX              11120204 103 + 21540570 cagtcatttttttccgattttccatcGGAAAATTCG-----TTGA---ATTCTTGTTCAAAACTtaaggaaattttcagcaaaaatatCTCTAAACACACGCAAATTCTTA
i cb4.chrX              I 100 C 0
e caePb3.Scfld02_0       4046493   0 +  4147112 C
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeSp111.Scaffold626    885814   0 +  1189296 C
e caeRem4.Crem_Contig0   2483961  37 -  4500979 I

a score=-11702.000000
s ce10.chrX              5790512 208 + 17718866 ----------------AGTTTGGTTATGAGCACGTAACTGTAAACAGTTTTCTCATT--------CGGCAATATTCTATTTTTGAAAGA-AAAACATTTTTTAAC----ACTTTAAATAAAATTTAATGGCTGAAACTTTCGTTGTAAATAAATGTTGACAATTGGTGAAATAGTTCAATTCGAAA-------AAGTTTTGAAACAGAAAACTTATTTTTT---------------AAAAAATCTCTAATTGCCTTTGG
s cb4.chrX              11120307 233 + 21540570 atccaaaaaagtaaaaaaaatttttgaaaattgaatttttcggaatattttccactgaaaacgcacagaaatttttaatttc------acacAGCACATTTTAAAATGGACTTTTTCTATTACAGAGCGGTT-----------------TCAATGGT-ACTAttagtacaaaaattcggTTCTGCAAGACTTCGAGTTGTTTGACAAGGATCCGATTCGTTTGCGTCTC--TCAGGAGGATACTGTTAATCATTTTTGG
i cb4.chrX              C 0 I 52
s caePb3.Scfld02_0       4046493 133 +  4147112 ----------------AGTGTTTTTATGAACTCGA-------GATGGTTATTCACTT--------------TGTTCAAGTTC------A-ACAAC---TTCTGAA-------------------------------------------------------------------------GttcagaagatgatgaagttGTTCAA-----ACCCCATCAATTAGGTTCTCAACCTGGAAAATATATGTACCGCGTTTTG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeSp111.Scaffold626    885814   0 +  1189296 C
e caeRem4.Crem_Contig0   2483961  37 -  4500979 I

a score=209.000000
s ce10.chrX              5790720 17 + 17718866 GATCACAAATGAATAGA
s caePb3.Scfld02_0       4046626 17 +  4147112 TGCCTCAATCAAGCAGA
i caePb3.Scfld02_0      C 0 I 106
e caeJap4.Scaffold17990   303976 119 -   357190 I
e cb4.chrX              11120540 52 + 21540570 I
e caeSp111.Scaffold626    885814  0 +  1189296 C
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=0.000000
s ce10.chrX              5790737 10 + 17718866 AATTATTGAA
e caePb3.Scfld02_0       4046643 106 +  4147112 I
e caeJap4.Scaffold17990   303976 119 -   357190 I
e cb4.chrX              11120540 52 + 21540570 I
e caeSp111.Scaffold626    885814  0 +  1189296 C
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=-1694.000000
s ce10.chrX              5790747 139 + 17718866 TTGAATCAGAAAAAGAAACAATT---------------------GAATTTTCC--------------GAGTTTGAAATACAATTTTTGCGAAC----------------------ATTTTAAGAAGTGCAATCTCTTGAAGGAAAT------------------------AACTTATAATTAAAAAGCTCAATGATTTACAGTAAAACGGTTTTT------------------------------------GAAAG
s cb4.chrX              11120592 255 + 21540570 TCAAACCAGCGTCAGAATCAATTCTTTTATAGAGAATCATGTTCGAATacttttgagagaaaaagaagagcttGCGCGGCATTTTTGACTAACCTAATTTTGTACCTACCAGCGCATTTTTTGGAACGACGTTTTCTAAACGAAATTCCCAATTGAAAAAACATAATCGCAAATTAAAATTATATATC-AAACGATGCACGAAGAAACGctcttttgaataaaaaaaaagaaggagcaAAAATGTTTCCTGGATAG
i cb4.chrX              I 52 C 0
e caePb3.Scfld02_0       4046643 106 +  4147112 I
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeSp111.Scaffold626    885814   0 +  1189296 C
e caeRem4.Crem_Contig0   2483961  37 -  4500979 I

a score=-2874.000000
s ce10.chrX              5790886 17 + 17718866 ---AGAACT------------------TTATCAAGCTG-----------
s cb4.chrX              11120847 49 + 21540570 AGAAATACGTTCCGACAAACGCGCcactcattattttttagccaaccta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    885814 17 +  1189296 ---TGTaca------------------tcttcaatttt-----------
i caeSp111.Scaffold626  C 0 I 2
e caePb3.Scfld02_0       4046643 106 +  4147112 I
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=-4130.000000
s ce10.chrX              5790903 21 + 17718866 ---------------TTCTTTTCAAAAAATTTGACA--
s cb4.chrX              11120896 38 + 21540570 atattttacAATTAGGCCCCtcgacaattcaaaaaata
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    885833 21 +  1189296 ---------------ctcactttgcAAGTTTTAAAA--
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4046749  7 +  4147112 ---------------TCCActc----------------
i caePb3.Scfld02_0      I 106 C 0
e caeJap4.Scaffold17990   303976 119 -   357190 I
e caeRem4.Crem_Contig0   2483961 37 -  4500979 I

a score=51971.000000
s ce10.chrX              5790924 137 + 17718866 GCAACATATTTTTTGAATACCTA-GACT-TGTCGTAGTTTGGTGTTTCCTGCT----ACACG------------GCGAGCCAGCAATTTTCCTGCCATCGAGCCCCCACACCGAGTCCAACGGTC-GCAGACAATCTTGT--------ACACGTGTGACCCATG
s cb4.chrX              11120934 156 + 21540570 accaCCTGGTTTGTAAAGACCCCTAACA-TGTTGTAGTTTGATTCTTCCTCCTTTCTCCATGAAACTTATCCCTGCCCGCCAGCAATTTTC------CTGAGCCCCCGCACCGAGTCCAACGGTC-GCAGACAATTTTGTACACACGCACACGTGTGGCATATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2483998 137 -  4500979 GCAACATATCAAGTGGAAACTCATGAAACTCCCGTAGTTTGATTCTTCCTGCT-----CATG------------GTGAGCCAGCAATTTTC-TGCCATTGAGCCCCCGCACGGAGTCCAACGGTC-GCAGACGATTTTGT--------ACACGTGTGGTCCATG
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold626    885854 126 +  1189296 ---------GTCGAAATATTTTGCAATT-TCTTGTAGTTTGGTCCATTC-GTT-----TGCAA-----------GTGAGCCAGc-gttttt-ttccattgagCCCCCGCACGGAGTCCAACGGTC-GCAGACAATTTTGT--------ACACGTGTGGTCCATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4046756 125 +  4147112 -------------aaaagtttcatgaat-TCCCGTAGTTTGGTTCTTCCTGCT-----CATAA-----------CTGAGCCAGCAATTTTC-TGCCATGGAGCCCCCGCACGGAGTCCAACGGTCGGCAGACAATTTTGT--------ACACGTGTGGTCCATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   303976 119 -   357190 I

a score=430675.000000
s ce10.chrX              5791061 1018 + 17718866  
s cb4.chrX              11121090 1063 + 21540570  
i cb4.chrX              C 0 I 7
s caeRem4.Crem_Contig0   2484135 1037 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    885980 1034 +  1189296  
i caeSp111.Scaffold626  C 0 I 156
s caePb3.Scfld02_0       4046881 1038 +  4147112  
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17990   304095  981 -   357190  
i caeJap4.Scaffold17990 I 119 C 0

a score=-6108.000000
s ce10.chrX              5792079 42 + 17718866 TGAATCTGTAACTG----TGAGGAAGTATAATTTTAATTTGTATTC
s cb4.chrX              11122160 45 + 21540570 TCAGTTTTTCTTTCGA-TCAGGTCGCAAAGAACTTGAGCTATATTT
i cb4.chrX              I 7 I 50
s caeRem4.Crem_Contig0   2485177 45 -  4500979 TCTAGTTGTCTTTGTT-TCAAGTTGTTCTATTATTGAATTATATCA
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0       4047929 44 +  4147112 -GAACTTgttatcaaa-acaattttgagcGCCACAGTATTCTACTT
i caePb3.Scfld02_0      I 10 I 18
s caeJap4.Scaffold17990   305076 46 -   357190 tgcatttttttgtgttgttaaattagtatctttttattttatctgt
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    887014 156 +  1189296 I

a score=-11204.000000
s ce10.chrX              5792121 53 + 17718866 CCCCAGAAT---ATACTTTTTCAAAAAATA----CTGTTGCCTCAGAAAA-----TAGCCAAAC------C
s caeRem4.Crem_Contig0   2485222 50 -  4500979 --CCTTATTTTCATGTGCCACTGAAAAGTT----------------AAAA--GTTTTGACTAGCGGTTCA-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4047991 61 +  4147112 -CTCTGAACTAGTTACTATTCCAGAAAGCCTAGccccttttttcgaaaaa--gtctaGGTAACC-------
i caePb3.Scfld02_0      I 18 C 0
s caeJap4.Scaffold17990   305122 38 -   357190 ---------ttaatattttt--------------tttttggttcagaGAGACATCtgaact----------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11122205 50 + 21540570 I
e caeSp111.Scaffold626    887014 156 +  1189296 I

a score=-9288.000000
s ce10.chrX              5792174 44 + 17718866 TAACAAAAGT----AAACCGGTTCACTTCGTTCCAAAA----AAAATTTATT
s cb4.chrX              11122255 45 + 21540570 ---TAGAAAA----AGTCCCAATCTTTCCATCTTGAGTCGAAAAAGTTACTA
i cb4.chrX              I 50 I 16
s caeRem4.Crem_Contig0   2485272 30 -  4500979 ---TATAAAATGACAGTCCCACT-------------------AATATTTCCA
i caeRem4.Crem_Contig0  C 0 I 9
s caePb3.Scfld02_0       4048052 34 +  4147112 AAATAGAATA----TCACCCATTCTCTT--------------CCAGTTTCCG
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   305160 17 -   357190 --------ga----aatttcata-------------------aatgtt----
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    887014 156 +  1189296 I

a score=323971.000000
s ce10.chrX              5792218 530 + 17718866  
s cb4.chrX              11122316 578 + 21540570  
i cb4.chrX              I 16 I 4
s caeRem4.Crem_Contig0   2485311 515 -  4500979  
i caeRem4.Crem_Contig0  I 9 I 3
s caeSp111.Scaffold626    887170 524 +  1189296  
i caeSp111.Scaffold626  I 156 C 0
s caePb3.Scfld02_0       4048088 536 +  4147112  
i caePb3.Scfld02_0      I 2 I 78
s caeJap4.Scaffold17990   305177 533 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-5236.000000
s ce10.chrX              5792748 18 + 17718866 --CTTT----------AAGCA---TTCTATTTG
s cb4.chrX              11122898 17 + 21540570 --ttttg---------cag-----ttttttctG
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2485829 13 -  4500979 --tttt------------------ctattttcg
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    887694 14 +  1189296 ----------------CGGAA---TTCGATTAG
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   305710 33 -   357190 TTCTTTGGCCACGCCtcggaaattttttactta
i caeJap4.Scaffold17990 C 0 I 135
e caePb3.Scfld02_0       4048624 78 +  4147112 I

a score=2365.000000
s ce10.chrX              5792766 57 + 17718866 CGTT---TCCCTTGTGCTAATA---TGCTTTTAAAAAATTTGGAAACGGATGCAGTTTTTTTG-------
s cb4.chrX              11122915 65 + 21540570 CGCCA--CCCATTCTggaaaga---aattcgaaaatataatTAAAACGGATGTTGTCCAActtctggaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2485842 62 -  4500979 cGCCA--CCAAttgtaaaaaaagagaattcaatAATAACATTAGAATGGATGctgttcaatttt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    887708 56 +  1189296 CGCCGCCCCCATTCCGAAAAGA---AATATGG-AATAAAATAGGAACGGATGCTGtccaa----------
i caeSp111.Scaffold626  C 0 I 2
e caePb3.Scfld02_0       4048624 78 +  4147112 I
e caeJap4.Scaffold17990   305743 135 -   357190 I

a score=-3410.000000
s ce10.chrX              5792823 43 + 17718866 TTGGAAAACACCTGAAATTTTCCCGAAT-----------TAC--------TAGTTC--CGCCA-C
s cb4.chrX              11122980 43 + 21540570 ttggaaaac------attttttgaaaat-----------tctatgaaaaataCCTCGAC-----C
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2485904 36 -  4500979 ---gaaaac------accTTTCAAAAAT-----------CGT--------TCTCCCGCTGTCG-C
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    887766 41 +  1189296 tgaaaaaaca----aattctttgaaaat-----------ctg--------tCTCACGTCGccg-a
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4048702 51 +  4147112 ttcaaaaac------attcttcgaaaatttcgagaatacTTC--------TTCCGCTGTGCCGTC
i caePb3.Scfld02_0      I 78 C 0
e caeJap4.Scaffold17990   305743 135 -   357190 I

a score=354122.000000
s ce10.chrX              5792866 596 + 17718866  
s cb4.chrX              11123023 594 + 21540570  
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2485940 586 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    887807 593 +  1189296  
i caeSp111.Scaffold626  C 0 I 99
s caePb3.Scfld02_0       4048753 578 +  4147112  
i caePb3.Scfld02_0      C 0 I 114
s caeJap4.Scaffold17990   305878 700 -   357190  
i caeJap4.Scaffold17990 I 135 C 0

a score=0.000000
s ce10.chrX              5793462 1 + 17718866 T
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeJap4.Scaffold17990   306578 0 -   357190 C
e cb4.chrX              11123617 1 + 21540570 I
e caeSp111.Scaffold626    888400 99 +  1189296 I
e caeRem4.Crem_Contig0   2486526 1 -  4500979 I

a score=-9202.000000
s ce10.chrX              5793463  89 + 17718866 AGAAAGTGTTGAGTGTTGC------ATCCTGTGCTTATGTTAATCTTATTTAATTTCACATACGCTTTTTTT-----------GAATATTGAT-------GAAATCG------TTTTTA
s cb4.chrX              11123618 108 + 21540570 tag-----------attgttttgaggatttgttctttttgtggggatattttATATCGTGCTCATTAGTTGTTACTATGTTGAGTTAATTGGTGGTACACTATTTCAGTAGCTGTTTTA
i cb4.chrX              I 1 I 7
s caeRem4.Crem_Contig0   2486527  56 -  4500979 AGA-----------GTTGT------AAtctgtttttt---------------------ggttttttggtttt------------tttattgGT-------TATGTCA------TTTTTA
i caeRem4.Crem_Contig0  I 1 C 0
s caeJap4.Scaffold17990   306578  66 -   357190 ----------GAGTGTTGT------GGTTGGTTGTgg-----------atttcttttttatttatttatttt-------tttagtttgctGGT-------TACATAG------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeSp111.Scaffold626    888400  99 +  1189296 I

a score=-9389.000000
s ce10.chrX              5793552 112 + 17718866 CCGAGCTCAAGCAAAATTGAATGCAAAATTGAATCTTAATTTTGAAGG-----------------------------CTCTAAAAGAGGGTGTTA---------ACTTATAAGATGGATTTCAAAAAGCAAATTCCATC---GTAAAAGTTTT
s cb4.chrX              11123733 140 + 21540570 ---AATTGCAGTAACCTGAGATGTAGTCGTGAATCTCAATTTAGATAATAGTATTTAGAGTGAATCTACCGTgcttcctctgatagaagctcTTCCGAACTGTCacctttgagatcaatt----------atttcgatttctgtgaaagatat
i cb4.chrX              I 7 C 0
s caeJap4.Scaffold17990   306644   7 -   357190 --------------------------------------------------------------------------------------------------------ACATATA------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeSp111.Scaffold626    888400  99 +  1189296 I
e caeRem4.Crem_Contig0   2486583   0 -  4500979 C

a score=-1087.000000
s ce10.chrX              5793664 26 + 17718866 TTGAACATTTTGCAAAAGAGTTGATA
s cb4.chrX              11123873 20 + 21540570 --taaaactTCGT----GAACTGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2486583 26 -  4500979 TTTAGCATGCTGCTATAGatctgaaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   306651 19 -   357190 -TGAGCatgttgaaaaaaca------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeSp111.Scaffold626    888400 99 +  1189296 I

a score=1030.000000
s ce10.chrX              5793690 15 + 17718866 TTAGGATTATTGCTG
s cb4.chrX              11123893 11 + 21540570 ----GAATATTGGTG
i cb4.chrX              C 0 I 162
s caeJap4.Scaffold17990   306670 15 -   357190 atagcgtttttgctg
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeSp111.Scaffold626    888400 99 +  1189296 I
e caeRem4.Crem_Contig0   2486609  0 -  4500979 C

a score=-1764.000000
s ce10.chrX              5793705 102 + 17718866 TAAGTTGCATATCTCTCGCTTTTTGTTCATTATTTAGATATAATTGCAGTTACCAATCTTAGTTTAGCCATATTTTTAGATCGTTTGAGCCCCCCTCGAAAT
s caeJap4.Scaffold17990   306685  39 -   357190 aaattt-------------------------------------ttgaaaatccctATTTTCGCCTA-----------AAAGCGTTT---------------T
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e cb4.chrX              11123904 162 + 21540570 I
e caeSp111.Scaffold626    888400  99 +  1189296 I
e caeRem4.Crem_Contig0   2486609   0 -  4500979 C

a score=-1629.000000
s ce10.chrX              5793807 58 + 17718866 ATTTGAAAAGTATTCAAAAGGTCTTATTACGTAATTTGACACTTGGATTCATTTTCAG
s caeRem4.Crem_Contig0   2486609 31 -  4500979 actcgaaatgtatc-----------------tgatctgaaaatt----------tcag
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   306724 22 -   357190 ---------------------------------CCCTGAaaact---ttcatttttat
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e cb4.chrX              11123904 162 + 21540570 I
e caeSp111.Scaffold626    888400 99 +  1189296 I

a score=-11760.000000
s ce10.chrX              5793865 75 + 17718866 TCGAGTATCTTCGATATGAACTTTA--ATTGAAATATGAACATAATTTTTGACTGAGCTCAATTTAACATAA--------ATAAA
s cb4.chrX              11124066 70 + 21540570 ttgagtttctcaggtttgaaatttcagattaaaatgt-------atttctga--------aatttaccAGAGTATTTACTGTGCT
i cb4.chrX              I 162 I 9
s caeRem4.Crem_Contig0   2486640 31 -  4500979 ---------tcg---tTAAAAATCC------------------------------------ATTTATCAGAGTA------ACACT
i caeRem4.Crem_Contig0  C 0 I 8
s caeJap4.Scaffold17990   306746 11 -   357190 tttagtaCTTT--------------------------------------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeSp111.Scaffold626    888400 99 +  1189296 I

a score=0.000000
s ce10.chrX              5793940 9 + 17718866 TTCATTTGG
e caePb3.Scfld02_0       4049331 114 +  4147112 I
e caeJap4.Scaffold17990   306757 0 -   357190 C
e cb4.chrX              11124136 9 + 21540570 I
e caeSp111.Scaffold626    888400 99 +  1189296 I
e caeRem4.Crem_Contig0   2486671 8 -  4500979 I

a score=356585.000000
s ce10.chrX              5793949 417 + 17718866 TTCGTTTTCAGTTCTGACGCGCCTTCTCCAAGACTTGACGCTTCAGAAGCCATGAGTGCTCCTCCAGATCCGGATATCAAGGT--------TCGAATTTTTTTTCACTCCCAAAAAAGCTTTTTCCGT------------TTTCAGCGCTACTGGGACAGCAGTTTAGACATAACTGATCTGAGTGGCCACGATTTCACTATTTTCAAGCAACTCCAAGGGATGCTTGGAATTGAGAACATTTCATTCGAAACTCTTGCTCGTTTCAACGTTCGTGTCCAAACCGACACCTATGGTCAACCTGCCATTCTTTTTCCACGGTATCGTGGAATGACTTCCCGGCTACGCATTCCAATGGGTTTGAAGTTGATCCGTAAAGTTGGAGACAGAATGGAAAAGGAGAACTATCCACTGCCAGATGAAACTTCGTAAGTAGAA
s cb4.chrX              11124145 413 + 21540570 ---gttttcagtTCTGACGCGCCATCTCCAAGATTGGACGCATCGGATTCGATGGGAGCTCCACCTGATCCGGATATCAAGGT------------ACAGTCTCTCCGCCC-------CTGCTTTTCATATACTCATC-CGTTTTAGCGCTACTGGGATAGCAGCTTGGACATCACTGATCTCAGTGGTCACGATTTCACGATCTTCAAGCAACTCCAAGGAATGTTGGGAATCGAGAACATCTCATTCGAGACTCTTTCTCGTTTCAATGTCCGTGTTCATACGGACACCTACGGACAACCGGCGATTTTGTTCCCACGCTACCGTGGAATGACATCTCGTCTTCGTATTCCCATGGGATTAAAGTTAATCCGTAAGGTTGGAGATCGGATGGAGAAGGAAAATTATCCATTGCCTGATGAAACTTCGTAAG-AACC
i cb4.chrX              I 9 I 1
s caeRem4.Crem_Contig0   2486679 410 -  4500979 --------CAGTTCTGACGCTCCATCACCAAGACTGGACGCTTCTGAAGCAATGGGTGCTCCACCAGATGCTGATATCAAGGTTGGTAGCTTACAAAAATTTATAAGACC-------TCAACATTTGT------------TTCCAGCGCTATTGGGACAGTAGTTTGGATATCACTGATCTCAGTGGACACGACTTCACCATTTTCAAGCAACTCCAGGGAATGCTTGGAATTGAGAACATTTCATTCGAAACTCTTTCTCGTTTCAATGTCCGTGTCCATACTGATACCTACGGACAGCCAGCTATTTTGTTCCCGCGTTACCGTGGAATGACTTCTCGACTCCGCATTCCGATGGGGTTAAAACTGATCCGTAAAGTTGGAGATCGCATGGAGAAAGAGAATTATCCACTTCCGGATGAAACCTCGTAAGTGATC
i caeRem4.Crem_Contig0  I 8 I 1
s caeSp111.Scaffold626    888499 411 +  1189296 tctgttttcagttctGACGCTCCATCACCAAGACTGGACGCTTCGGAAGCAATGGGAGCTCCACCAGATCCGGATATCAAGGT--------------ATTATCTTATCTT-------ATCTGTTTTGGTAACTGACTGTCTTGTAGCGCTACTGGGATAGCAGTCTGGATATCACTGATTTGAGTGGACATGACTTCACTATCTTCAAACAACTTCAAGGAATGTTGGGTATCGAGAATATCTCATTTGAAACTCTTTCACGTTTCAATGTTCGTGTTCATACCGATACATACGGTCAACCAGCTATTCTATTCCCACGTTACCGCGGAATGACTTCAAGACTTCGTATTCCAATGGGATTGAAGTTGATCCGAAAAGTTGGCGATAGAATGGAAAAGGAGAATTATCCACTTCCGGATGAGACATCGTGAG-----
i caeSp111.Scaffold626  I 99 I 38
s caePb3.Scfld02_0       4049445 418 +  4147112 ttcattttcagttctgacGCTCCTTCTCCAAGACTGGACGCATCGGAAGCTATGGGTGCTCCACCAGATCCGGATATCAAggt--------------agtttttcatttcc-----agtttcCCTTTCATACTCATTATGATTTAGCGCTACTGGGATAGCAGCTTGGATATCACTGATCTCAGTGGTCACGATTTCACAATCTTCAAGCAACTTCAAGGAATGCTTGGAATCGAGAATATCTCATTTGAAACTCTTTCTCGTTTCAACGTTAGAGTCCATACTGACACCTATGGTCAACCAGCAATTCTTTTCCCACGCTACCGTGGAATGACTTCTCGACTCCGTATTCCAATGGGACTGAAGTTGATCCGTAAAGTTGGAGACAGAATGGAGAAAGAAAACTATCCACTTCCGGATGAAACTTCGTTTGTGACT
i caePb3.Scfld02_0      I 114 I 7
s caeJap4.Scaffold17990   306757 405 -   357190 ---------AGTTCGGACGCCCCATCTCCAAGACTGGACCCATCGGAAGCTATGAGCGCCCCTCCGGATCCGGATATCAAGGT----------------TTTATCGCCTC-------ATTTCATGGTTctgatcaattttttttagcgcTACTGGGACAATAGTCTTGACATTACTGATTTGAGTGGCCACGACTTTACCATCTTCAAACAACTTCAAGGGATGCTTGGAATCGAAAACATTTCATTTGAGACTCTTTCTCGTTTTAATGTCCGCGTTCACACTGATACGTATGGCCAGCCAGCTATTTTATTTCCACGTTACCGTGGCATGACTTCTCGACTTCGTATTCCGATTGGATTGAAGTTGATCCGCAAGGTAGGAGATAGAATGGAGAAGGAAAACTACCCGCTACCGGATGAGACTTCGTAAGTTTCA
i caeJap4.Scaffold17990 C 0 C 0

a score=-11063.000000
s ce10.chrX              5794366 34 + 17718866 ------------ATTCCGATGTCTTCCTTCATAGTT----------ACCCATTTCC
s cb4.chrX              11124559 38 + 21540570 -------------AACCAGAAAGAT-----ATAATTCCAGGTGATGGATTCATTTC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2487090 31 -  4500979 -------------gttcaaaatta------aaaatt---gaacatagA---GTTTC
i caeRem4.Crem_Contig0  I 1 C 0
s caePb3.Scfld02_0       4049870 28 +  4147112 ------------GTTTCAATAGCa------atgatc----------actttttttc
i caePb3.Scfld02_0      I 7 I 2
s caeJap4.Scaffold17990   307162 34 -   357190 CTATCAGATAAAGTTTTAATAAAAT-----AAAGTT-----------------TAC
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    888910 38 +  1189296 I

a score=272614.000000
s ce10.chrX              5794400 278 + 17718866 AGCGTTCGCCAAAAGTTCAATGGAGTTTTCGGGCTTCATATGGCAACTCTGTCAGATCGAAGTGTAGTCATTACCACAAATGAGCGTGATGCTTTGGCGATCTACGAAGCCACCAAAGCTCTGGTATTTGCTCTACCACATGGAGAAATTTTGGATCCACTCGTGCTTCCGTATCTGGAGGAATTTGACAAGATCTATCTGTGGTTCCCGGTTCAGCATGTCAGTTATGCCAAAGACTGGGGAAGTGCTTTGAACACCCTCAAATGTCTTCTTGTGAA
s cb4.chrX              11124597 278 + 21540570 AGTGTTCGTCAAAAGTTCAGTGGCGTCTTTGGACTCCATATGGCAACTTTGTCCGATCGTAGTGTTGTGATCACTACCAACGAGCGTGATGCCCTGGCTATCTACGAGGCCACCAAAGCGCTAGTATTTGCTCTGCCCCATGGGGAGATCATGGACCCACTAGTCCTACCTTACTTGGAGGAGTTTGACAAGATCTACTTGTGGTTCCCAATTCAACATGTAAGCTATGCCAAGGACTGGGGAAGTGCGTTGAACACTCTCAAGTGCCTTCTTGTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487121 278 -  4500979 AGGGTCCGTCAAAAATTTAGTGGTGTCTTTGGACTTCACATGGCTACTCTCTCGGATCGTAGCGTTGTGATTACCACTAATGAACGTGATGCATTGGCAATCTACGAAGCTACCAAGGCGTTGGTCTTTGCTTTGCCCCATGGAGAAATTTTGGACCCACTGGTACTTCCGTATTTGGAGGAGTTTGACAAGATCTACCTGTGGTTCCCAGTGCAACACGTTAGCTACGCGAAAGACTGGGGAAGTGCTTTGAACACGCTCAAGTGTCTTCTCGTCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    888948 278 +  1189296 AGGGTTCGTCAAAAATTCAGTGGTGTTTTTGGTCTTCATATGGCGACTCTTTCGGACCGTAGCGTCGTTATCACCACTAATGAAAGAGATGCATTAGCTATTTATGAAGCTACCAAAGCTCTTGTCTTTGCTCTTCCCCACGGGGAGATATTGGATCCACTTGTTCTCCCATATTTGGAAGAGTTCGACAAGATCTACTTGTGGTTCCCTGTTCAACATGTCAGCTATGCAAAAGACTGGGGAAGTGCATTGAACACTCTCAAATGTCTTCTTGTCAA
i caeSp111.Scaffold626  I 38 C 0
s caePb3.Scfld02_0       4049900 278 +  4147112 agggTCCGTCAAAAGTTCAGTGGTGTATTCGGCCTCCACATGGCAACGTTGTCTGATCGTAGTGTTGTGATCACTACCAATGAACGTGATGCATTGGCAATCTACGAAGCCACTAAAGCTCTCGTGTTTGCATTGCCTCATGGAGAGATACTGGATCCACTGGTTCTTCCGTATTTGGAAGAGTTTGACAAGATTTACTTGTGGTTCCCTGTTCAACATATGAGCTACGCCAAGGATTGGGGAAGTGCTTTGAACACCCTCAAATGCCTTCTTGTCAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   307196 278 -   357190 AGTGTCCGTCAAAAGTTCAGTGGAGTTTTTGGTCTTCACATGGCCACTCTCTCGGATCGAAGCGTGGTGATCACTACTAATGAACGTGATGCTCTTGCCATTTATGAAGCAACTAAAGCTCTGGTTTTTGCCCTTCCTCACGGCGAATTAATGGATCCCTTGCTTCTACCGTATCTGGAAGAGtttgacaaaatttatttatggTTTCCAATCCAACACGTCAGCTACGCAAAAGACTGGGGAAGTGCGTTGAACACGCAAAAATGCCTTTTGGTGAA
i caeJap4.Scaffold17990 C 0 C 0

a score=1000.000000
s ce10.chrX              5794678 1 + 17718866 G
s cb4.chrX              11124875 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487399 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889226 1 +  1189296 G
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4050178 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   307474 0 -   357190 C

a score=-15494.000000
s ce10.chrX              5794679 135 + 17718866 TGAGTTTATGGTATTCAGT---AGGACTATCATGGAAGGCGCGGATTGCGGCGTAAGACAGGTGGCGTTCCGGAGCCTGCTTGGAAGCCCTAGTATATAGAGAACGTTCGGAAAACAAAACCAAAAGAGTAAGTTCAG
s cb4.chrX              11124876  49 + 21540570 --------TGA-----------GTGACTATGGTGAGGAGC--------------AAGTCAGGt-------------------------cctaaattttg-------------------------------aactttag
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487400  44 -  4500979 --------TAATCTAGAATTTTGTAACTATTGATCGAa----------------------------------------------------tacatt----------------------------------attttcag
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889227  44 +  1189296 ------TATGAAGAACAGTCACCTGACAATg-----------------------------------------------------------taaaatttg-----------------------------ttttttccag
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4050179   0 +  4147112 C
e caeJap4.Scaffold17990   307474   0 -   357190 C

a score=910.000000
s ce10.chrX              5794814 1 + 17718866 A
s cb4.chrX              11124925 1 + 21540570 a
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487444 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889271 1 +  1189296 a
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   307474 1 -   357190 A
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4050179 0 +  4147112 C

a score=303095.000000
s ce10.chrX              5794815 419 + 17718866 AACGAAGAACGCCCAATTGAATTGGTTCGTAATGGTGATCATCGGCTCATTCGGAACTCACTATCTAACTCGGTA--CTG------TTGCCATTTTG-----TTCTTGTTTT--------TTTTCAACTTTCATAGTTTAGGTGGTTCGAATGAGAGAGCGTGGTTTCCGTTCAATGACAGATTTAGACATGCGTGAAGGAATCCGTTCAGACCTTCTCAACTCGACAAATCGCGTTGTTGGATTTGGACAAGTAAG--ACGAAA---GGAA-------------AAAAGATAAATTTCGGTCTAAA----TAATTTGT--TTCAGTGGAAACGATTTGCTGTTTTGAATAAGTATCTTGGCGGGCTTCGGCCAGGGGAGATGACAGTTTTAACCGGAGGAACCGGCAACGGAAAAACTACATTTTTATGTGAATACTCATTGGATCTATTTACTCAAGGGGTA
s cb4.chrX              11124926 411 + 21540570 aACGAGGAGCGCCCCATCGAGTTGGTCCGGAACGGAGACCATCGTCTTATCCGCAACTCACTCTCTAACTCGGTACACCC------T-----ATTTGTTAGTTATTTCTTTT--------Ctactaatttt-----tttaggttgTTCGTATGCGTGAACGTGGTTTCCGCTCAATGACAGATTTGGACATGCGTGAGGGAATCCGTTCCGATCTTCTGAACTCGACAAACCGAATCGTTGGATTCGGTCAAGTAAG--TCATTCTGGAATA-------------TAAAAATCAA-------CCAGG---TTATTTT----TCCAGTGGAAACGTTTCGGAGTGCTGAACAAGTACCTCGGAGGTCTTCGCCCTGGAGAGATGACCGTTTTGACTGGAGGAACTGGAAATGGAAAGACAACTTTCTTGTGCGAATACTCACTCGATCTCTTCACTcaaggggta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487445 410 -  4500979 aacgaaGAGAGGCCAATCGAGCTTGTCCGTAATGGAGACCATCGTCTCATCCGCAACTCTCTTTCCAACTCGGTCAgtta------t-----ttttcatgatttgtTATtct--------gttttga-gtt-----ttcaggtTGTTCGTATGAGAGAACGTGGTTTCCGTTCCATGACGGATTTGGATATGCGTGAGGGAATCCGTTCCGATCTACTCAATTCAACAAACAGAATTGTTGGATTTGGACAGGTAAC--AAATAC---AATG-------------AATACATTCA-------Gcaagaaattgatat----ttcagtGGAAACGATTCGGAGTGTTGAACAAGTATCTCGGAGGACTTCGCCCAGGGGAGATGACCGTACTCACCGGAGgaactggaaatggaaaaactacttttctcTGTGAATACTCACTTGATCTTTTTACTCAAGGGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889272 403 +  1189296 aacgaAGAACGTCCAATTGAATTGGTTCGCAACGGAGATCATCGTCTCATCCGGAACTCACTTTCAAACTCGGTGagctg------t-----tttta-----tttttatttt-----cgactTTTGATG-------TTTAGGTTGTTCGCATGCGAGAACGCGGATTCCGCTCAATGACTGATTTGGACATGCGTGAAGGAATCCGTTCCGACCTTCTTAATTCAACAAACAGAATTGTTGGATTTGGACAGGTAAA--TACTTC--------------------AAGATCTTTG-------CTAAA----CGGTATGATATTTAGTGGAAACGATTTGGAGTTTTGAACAAGTATCTCGGAGGTCTTCGTCCTGGAGAAATGACTGTTCTCACTGGAGGAACTGGTAATGGAAAGACTACGTTCCTTTGTGAATACTCACTCGATCTCTTCACACAAGGGGTA
i caeSp111.Scaffold626  C 0 I 38
s caePb3.Scfld02_0       4050179 420 +  4147112 AACGAGGAGCGCCCAATTGAATTAGTCCGTAATGGTGATCACCGTCTCATTCGCAACTCGCTTTCTAATTCTGTAAGCTGACtcact-----ttttg-----ttgttatttctt--gtgacttttgaaaat-----ttcaggttgTTCGAATGAGAGAACGTGGTTTCCGCTCAATGACTGATTTGGACATGCGTGAAGGAATTCGTTCGGATCTTCTCAACTCTACCAACAGAATTGTTGGATTCGGACAAGTAAGACAACTTC---GATGT---AGAAA----GAGAGTTTCA-------GAGAA----TGTT------TTCAGTGGAAACGATTTGGAATTCTCAACAAGTACCTTGGAGGTCTCCGTCCTGGAGAGATGACAGTGCTTACCGGTGGAACTGGAAATGGGAAGACAACTTTCCTTTGTGAATACTCACTTGATCTTTTCACCCAAGGGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   307475 424 -   357190 AATGAGGAACGCCCGATTGAGTTGGTGCGCAATGGCGATCATCGTCTCATCCGAAACTCGCTTTCAAACTCAGTGAGATA------G-----AAATCTGAGTCACTTTTTCTCTACACGAACTTTGACA-------TTCAGGTTGTTCGTATGAGAGAGCGCGGTTTCCGGTCTATGACTGATTTGGACATGCGTGAAGGCATCCGTTCCGATCTTCTCAACTCGACTAATCGGGTTGTTGGATTTGGACAAGTAAC--AAGACA---CACATATCAGAAAAATTGAGACTTTAA-------TTA------TGATAT----TTCAGTGGAAGCGCTTTGCCGTTCTTAACAAGTATCTAGGAGGTCTGCGTCCCGGAGAGATGACTGTGCTCACTGGAGGAACTGGAAATGGAAAAACGACTTTTCTTTGTGAATATTCTCTTGATCTTTTTACTCAAGGGGTA
i caeJap4.Scaffold17990 C 0 C 0

a score=-19749.000000
s ce10.chrX              5795234 47 + 17718866 TTTTAAAT--TTTAGCA-------------------TTAGCTGAGTTTTTCTAATATCTCTGGTTTAA
s cb4.chrX              11125337 38 + 21540570 -------c--tgtagttttc----------------ggaACAATTCATTCAGAAT----ACGGTAGC-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487855 33 -  4500979 -------CATTGTAGTT---------------------AAC------TTCACAATATCGATGGttac-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4050599 40 +  4147112 -CTCTTAC--CGTACTT-------------------TGAGCGCTCCAATCGTAAACTC-ATAG-----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   307899 43 -   357190 -----------CTAGTTATTTGATAATACATATATAGAAactgttcttttttgt--------------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    889675 38 +  1189296 I

a score=180755.000000
s ce10.chrX              5795281 245 + 17718866 TTCT---AGGTGCGCACGCTGTTCTGCAGTTTCGAGATGCCTGAAAAGAAGATCCTCCATTGGATGCTTGTGCAATACGCTGGGTATGATGATCTAGTGTT------TTTTCTAT-TGTTATTCTATTTTATTTTTCAATGGCTTGCAACTT-------TTTAACTAACATTTGTTTTTGTCTGCAGTCCTTCACATCTTCGAAGCCTCGCGCGCACTAACTCATATAAAAATGGCATCAAGTAAGAATATT------TAGAAGTATT
s cb4.chrX              11125375 228 + 21540570 TTAT---AGGTTCGCACACTTTTCTGCAGTTTCGAAATGCCGGAGAAAAAGATTCTCCACTGGATGTTAGTCCAGTATGCCGGGTAAGTGT------GGTA------CAGTGTGT-TGTCCACT-------TTTTT---CGGCTTGCAACTT-------TCTTACTAACATTT-CTCGTGTCTGCAGTCCATCACATCTTCGAAGCCTCGCGCGCACTAACTCGTATAAAAATGGCATAAAGTAAGAATCATAGAATGTAGA------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2487888 233 -  4500979 ttttttcaggttcGCACTCTCTTCTGCAGTTTTGAGATGCCAGAGAAAAAGATTCTCCATTGGATGTTGGTTCAGTATGCCGGGTACGTTTTGATAATGTG------AAAAGTGT-TGTTA----------TTTTC---TGGCTTGCAACTT---------TTACTAACATTTGTTTTTGTCTGCAGTCCATCACATCTTCGAAGCCTCGCGCGCACTAACTCGTATAAAAATGGCATCAAGTAAGAATCAGTAGTTCTGGA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889713 232 +  1189296 TTTG---AGGTTCGAACATTGTTCTGTAGTTTTGAGAtgccagaaaaaaagattcttcATTGGATGCTTGTCCAATATGCCGGGTACGTTAAAACAGTgtgatt---tcttttcc-tttta----------cCTTT---TGGCCTGCAATTT--------CTTACTAACATTTG-TTTTGTCTGCAGTCCTTCACATCTTCGAAGCCTCGCGCGCACTAATTCGTATAAAAATGGCATCAAGTAAGATTCA-------TAGAGATGCT
i caeSp111.Scaffold626  I 38 C 0
s caePb3.Scfld02_0       4050639 235 +  4147112 TTTC---AGGTCCGCACCTTGTTCTGCAGTTTTGAGATGCCGGAAAAGAAAATCCTACATTGGATGTTGGTCCAATATGCCGGGTACGTGATGACAGAGTGATTAGATATTTTCT-TGTTA----------CTTTT---TGGCTTGCAACTT---------TTACTAACATTTGTTTTTGTCTGCAGTCCATCACATCTTCGAAGCCTCGCGCGCACTAACTCATATAAAAATGGCATCAAGTAAGAATTG-------TAGATAtgct
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17990   307942 231 -   357190 ttac---aGATCCGCACCTTGTtctgcagtttcgaaatgcctGAGAAAAAGATTCTTCACTGGATGCTTGTTCAGTATGCCGGGTAGGTTTTG-CAGTGTG------CATcgtgtctgttt----------ttttt---tgtcttgcaatttttttttttttgactaacATTTG-TTTTGTCTGCAGTCCTTCACATCTTCGAAGCCTCGCGCGCACAAATTCGTATAAAAACGGCATCAAGTAAGAGTAG-------TAGT------
i caeJap4.Scaffold17990 C 0 C 0

a score=-9178.000000
s ce10.chrX              5795526 32 + 17718866 AGGA--TCTATCTGGAATAGTTTTTG------TTTTTT--CT
s cb4.chrX              11125603 32 + 21540570 AGAAGGAATTCCTTGATTAGTTTGAA------CTCTGA----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2488121 37 -  4500979 AGGA-GACTACATAgattattatgaaaatgagCGCTTG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889945 32 +  1189296 GGGA-GAATAC-TGGAATATTTTGAA------CCTTTACT--
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   308173 24 -   357190 ------AGAGCCTAGAG-AATATAGA------TGTGt-----
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4050874 16 +  4147112 I

a score=249383.000000
s ce10.chrX              5795558 634 + 17718866  
s cb4.chrX              11125635 629 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2488158 639 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    889977 607 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4050890 626 +  4147112  
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17990   308197 691 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=5130.000000
s ce10.chrX              5796192 7 + 17718866 TTCAGGT
s cb4.chrX              11126264 7 + 21540570 TCCAGGT
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   2488797 7 -  4500979 TACAGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    890584 7 +  1189296 TACAGGT
i caeSp111.Scaffold626  C 0 I 36
s caeJap4.Scaffold17990   308888 7 -   357190 Ttcaggt
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4051516 0 +  4147112 C

a score=273.000000
s ce10.chrX              5796199 1 + 17718866 T
s caeRem4.Crem_Contig0   2488804 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 I 60
s caeJap4.Scaffold17990   308895 1 -   357190 t
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4051516 0 +  4147112 C
e cb4.chrX              11126271 39 + 21540570 I
e caeSp111.Scaffold626    890591 36 +  1189296 I

a score=59.000000
s ce10.chrX              5796200 3 + 17718866 ATT
s caeJap4.Scaffold17990   308896 3 -   357190 ttt
i caeJap4.Scaffold17990 C 0 I 16
e caePb3.Scfld02_0       4051516 0 +  4147112 C
e cb4.chrX              11126271 39 + 21540570 I
e caeSp111.Scaffold626    890591 36 +  1189296 I
e caeRem4.Crem_Contig0   2488805 60 -  4500979 I

a score=0.000000
s ce10.chrX              5796203 430 + 17718866 TCTTTTTACATCAACTTACAGTTTTGGTTCATAAACTAACATTACAAGAAATGGGAACATTTGGTTTAGTAGGAGAAAAACTACAGTGCGCCCAATTGCTGGGACCCCCCTTCCATTTGAGCGGTTTAGGGCATTTTGGAACTTTTTAATAGGAAAATAATATGGGAATCGGATTCAGCATTACAAAAAACCTCTGTGTCAACAATTGTATTCGGATATCCCAAAAATTGGGAGCAAAATGGCAAAAAGTTGAAAAATCGACCGCCCAACTGCTATCAAGAGGGTGTTTTTCTGGACCTCGTAAATATTATGACACTTCTCCAAAAAAACATTAACCagtttgttgagtatcattacaaaatttgttcatattttgaaaatatatgtacatgcaaaaacccaaaacccttagtcctcctctaaACATATA
e caePb3.Scfld02_0       4051516   0 +  4147112 C
e caeJap4.Scaffold17990   308899  16 -   357190 I
e cb4.chrX              11126271  39 + 21540570 I
e caeSp111.Scaffold626    890591  36 +  1189296 I
e caeRem4.Crem_Contig0   2488805  60 -  4500979 I

a score=461.000000
s ce10.chrX              5796633 18 + 17718866 AATCTTCTTGAACCTTCG
s caeJap4.Scaffold17990   308915 18 -   357190 aaTCTAAACGAAATTTCA
i caeJap4.Scaffold17990 I 16 C 0
e caePb3.Scfld02_0       4051516  0 +  4147112 C
e cb4.chrX              11126271 39 + 21540570 I
e caeSp111.Scaffold626    890591 36 +  1189296 I
e caeRem4.Crem_Contig0   2488805 60 -  4500979 I

a score=273.000000
s ce10.chrX              5796651 1 + 17718866 T
s caeRem4.Crem_Contig0   2488865 1 -  4500979 t
i caeRem4.Crem_Contig0  I 60 C 0
s caeJap4.Scaffold17990   308933 1 -   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4051516 0 +  4147112 C
e cb4.chrX              11126271 39 + 21540570 I
e caeSp111.Scaffold626    890591 36 +  1189296 I

a score=910.000000
s ce10.chrX              5796652 1 + 17718866 T
s cb4.chrX              11126310 1 + 21540570 t
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2488866 1 -  4500979 t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    890627 1 +  1189296 T
i caeSp111.Scaffold626  I 36 C 0
s caeJap4.Scaffold17990   308934 1 -   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4051516 0 +  4147112 C

a score=222687.000000
s ce10.chrX              5796653 221 + 17718866 TTCAGGATCGATTTGTCGGATACATGCGTCAACTTGCTACTCAGAATCAAATTCACATCACTATGGTTGTTCATCCCAGAAAAACTGACGGTGATACTGAAATTGATGTGCAACACTTTGGAGGTTCCGCCAGAGTCACCCAGGAAGCTGATAATGTCATTGCTATTCAGCGGAAGCGTGATGATCGTGACCGTTCCAAGTTCCGAAAATTCTTATACGTA
s cb4.chrX              11126311 221 + 21540570 ttcagGACCGCTTCGTTGGATACATGCGCCAATTGGCTACCCAGAACCAAATCCACATCACTATGGTTGTTCACCCAAGAAAGACCGATGGAGACACTGAGATTGACGTCCAGCACTTTGGAGGATCCGCTCGAGTCACCCAAGAAGCCGATAACGTTTTGGCCATCCAGCGGAAACGCGATGATCGTGATcgctcaaaattcagaaagttcctCTACGTa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2488867 221 -  4500979 ttcaggatCGCTTTGTTGGGTACATGCGTCAACTAGCCACTCAGAATCAAATCCACATCACAATGGTTGTCCATCCACGAAAAACCGACGGAGACACAGAGATTGATGTTCAACACTTTGGAGGATCTGCTAGAGTTACCCAGGAGGCTGACAACGTTTTGGCTATCCAAAGAAAACGCGATGACCGTGACCGCTCGAAATTCAGAAAGTTCCTTTATGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    890628 221 +  1189296 TCCAGGATCGTTTCGTTGGATACATGCGTCAACTTGCAACACAAAACCAAATCCACATCACAATGGTAGTTCATCCAAGAAAAACTGACGGAGACGCTGAAATCGATGTTCAACATTTCGGAGGATCAGCAAGAGTTACACAGGAAGCAGACAATGTTTTGGccattcaaagaaaacgtGACGACCGTGATCGTTCGAAGTTCAGAAAGTTCCTCTACGTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4051516 221 +  4147112 TCCAAGATCGCTTCGTTGGATACATGCGCCAACTTGcaactcaaaatcaaattcacaTCACTATGGTGGTCCACCCCCGTAAAACCGATGGCGACACTGAAATCGATGTTCAACACTTTGGAGGATCAGCAAGAGTCACTCAAGAAGCTGACAACGTTTTGGCTATCCAACGAAAACGTGATGATCGTGAtcgttcaaaattcagaaagttccTCTACGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   308935 219 -   357190 --CAGGACCGATTTGTTGGATACATGCGGCAGTTAGCCACCCAAAGCCAAATTCACATTACATTGGTGGTACATCCACGGAAAACCGACGGCGACACTGAAATTGATGTGCAGCATTTTGGAGGGTCTGCAAGAGTCACTCAGGAAGCTGATAATGTGATGGCTATACAGAGAAAACGTGACGATCGTGATCGCTCAAAGTTTAGAAAGTTCCTATATGTA
i caeJap4.Scaffold17990 C 0 I 1105

a score=1090.000000
s ce10.chrX              5796874 2 + 17718866 AG
s cb4.chrX              11126532 2 + 21540570 cg
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   2489088 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 I 38
s caeSp111.Scaffold626    890849 2 +  1189296 AG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4051737 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   309154 1105 -   357190 I

a score=-715.000000
s ce10.chrX              5796876 3 + 17718866 CTT-
s cb4.chrX              11126572 3 + 21540570 ttc-
i cb4.chrX              I 38 C 0
s caeSp111.Scaffold626    890851 3 +  1189296 -TTT
i caeSp111.Scaffold626  C 0 I 34
s caePb3.Scfld02_0       4051739 2 +  4147112 -TT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   309154 1105 -   357190 I
e caeRem4.Crem_Contig0   2489090 38 -  4500979 I

a score=-2045.000000
s ce10.chrX              5796879 18 + 17718866 CTAG-----TAGAA--TGATATGAC
s cb4.chrX              11126575 24 + 21540570 ctaatattttcttattttgaat-AA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4051741 19 +  4147112 -GAA-----CCGGATTTGAAATAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   309154 1105 -   357190 I
e caeSp111.Scaffold626    890854 34 +  1189296 I
e caeRem4.Crem_Contig0   2489090 38 -  4500979 I

a score=-1044.000000
s ce10.chrX              5796897 12 + 17718866 CATCCAGGATTC
s cb4.chrX              11126599 11 + 21540570 CATTCATTATT-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4051760  6 +  4147112 CATTTC------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   310259  9 -   357190 CATccagaa---
i caeJap4.Scaffold17990 I 1105 C 0
e caeSp111.Scaffold626    890854 34 +  1189296 I
e caeRem4.Crem_Contig0   2489090 38 -  4500979 I

a score=729.000000
s ce10.chrX              5796909 2 + 17718866 TA
s caeRem4.Crem_Contig0   2489128 2 -  4500979 ta
i caeRem4.Crem_Contig0  I 38 C 0
s caePb3.Scfld02_0       4051766 2 +  4147112 TA
i caePb3.Scfld02_0      C 0 I 9
s caeJap4.Scaffold17990   310268 1 -   357190 -a
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11126610 0 + 21540570 C
e caeSp111.Scaffold626    890854 34 +  1189296 I

a score=182076.000000
s ce10.chrX              5796911 710 + 17718866  
s cb4.chrX              11126610 759 + 21540570  
i cb4.chrX              C 0 I 450
s caeRem4.Crem_Contig0   2489130 661 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    890888 680 +  1189296  
i caeSp111.Scaffold626  I 34 I 2
s caePb3.Scfld02_0       4051777 877 +  4147112  
i caePb3.Scfld02_0      I 9 I 2
s caeJap4.Scaffold17990   310269 740 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=1411.000000
s ce10.chrX              5797621 10 + 17718866 ACAGCTCTAG
s caeRem4.Crem_Contig0   2489791 10 -  4500979 AGAGCTTCAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    891570  7 +  1189296 ---GCTttaa
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4052656  4 +  4147112 ------TCAA
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   311009 10 -   357190 ATAAATTTAG
i caeJap4.Scaffold17990 C 0 I 328
e cb4.chrX              11127369 450 + 21540570 I

a score=-3671.000000
s ce10.chrX              5797631 13 + 17718866 ---AAAAACG---ACAAGA------
s caeRem4.Crem_Contig0   2489801 19 -  4500979 TCAGAAAACgtcttcaagt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    891577 13 +  1189296 ---------g---acaaaaaaaaga
i caeSp111.Scaffold626  C 0 I 152
s caePb3.Scfld02_0       4052660 16 +  4147112 ---------GTTTGCAAATGGTAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I

a score=835.000000
s ce10.chrX              5797644 30 + 17718866 ----AGCTTGAATAAGTGGCAATTCTGACGAAGA
s caeRem4.Crem_Contig0   2489820 30 -  4500979 tttttgcct----actttaaaattttaaagaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4052676 29 +  4147112 ----CACTTGAA-ACTCAAGAATTCTGACGAAAC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I

a score=960.000000
s ce10.chrX              5797674 27 + 17718866 TATGTGCTAAGCCGTTACATAATTCAT
s caePb3.Scfld02_0       4052705 27 +  4147112 TTTGAGCCAGGTGTTTGAATAATTCAT
i caePb3.Scfld02_0      C 0 I 303
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I
e caeRem4.Crem_Contig0   2489850  0 -  4500979 C

a score=0.000000
s ce10.chrX              5797701 804 + 17718866  
e caePb3.Scfld02_0       4052732 303 +  4147112 I
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I
e caeRem4.Crem_Contig0   2489850   0 -  4500979 C

a score=755.000000
s ce10.chrX              5798505 73 + 17718866 TTGCTGAAGTGCTT-----TTCTTGTGAGCACTAAACGTTTGTAATTTCTCAAAATGTTTTGTTTCGAATTCATACGC
s caeRem4.Crem_Contig0   2489850 66 -  4500979 ttgttgaaaaacgtaaaattttttatgaacac----ctttt----ttcaccaaaatgttt-gttttgaatatgta---
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4052732 303 +  4147112 I
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I

a score=-3363.000000
s ce10.chrX              5798578 74 + 17718866 -AATGGACAAAA-ATAAAAAG-----TTTAATTGACTGTTTAGCATTTTTGTGTTTCAAAAATTCATATAGTTTAGTAAGT
s caeRem4.Crem_Contig0   2489916 63 -  4500979 aaacagaaattacgtagaaat-----tttaaaataggttttagaacaaat---ttttgaaaactattgagA----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4053035 66 +  4147112 -AATGTACATCA---ACAAATAACCATTGAAAACATAGCATTatactctt---tttttaattttaatcaAAGT--------
i caePb3.Scfld02_0      I 303 C 0
e caeJap4.Scaffold17990   311019 328 -   357190 I
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I

a score=91.000000
s ce10.chrX              5798652 1 + 17718866 A
s caeJap4.Scaffold17990   311347 1 -   357190 a
i caeJap4.Scaffold17990 I 328 C 0
e caePb3.Scfld02_0       4053101 0 +  4147112 C
e cb4.chrX              11127369 450 + 21540570 I
e caeSp111.Scaffold626    891590 152 +  1189296 I
e caeRem4.Crem_Contig0   2489979 0 -  4500979 C

a score=422.000000
s ce10.chrX              5798653 1 + 17718866 A
s cb4.chrX              11127819 1 + 21540570 A
i cb4.chrX              I 450 C 0
s caeRem4.Crem_Contig0   2489979 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4053101 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   311348 1 -   357190 g
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    891590 152 +  1189296 I

a score=113409.000000
s ce10.chrX              5798654 126 + 17718866 AAAACTTACATGGCCAATGCAAGTAAGAACGGTTGGTTAAATCCGAGTTGAGAAATAACGGCACCCATCAAGTTGGTTTATTATGCATCA----TTCAACCAATTCTGAATAAGTGATCAATTGTGGAAT
s cb4.chrX              11127820 125 + 21540570 ATAACTTACATGGCCAGCGCGAGTAGGAACGGCTGATTGAATCCGAGCTGAGAAATAACGGCACCCATCAAGTTGTTCTATTATGCATCA----TTCGACCAAATCTGAATGAATGAACCATTA-GAAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2489980 124 -  4500979 ATAACTTACACAGCGAGAGCAAGTAAGAACGGCTGATTAAATCCGAGCTGAGAAATAACGGCACCCATCAAGTTGCTCTATTATGCATCA----TTCGACCAACTCTGAATGAATGAACCATTA-G-AAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    891742 122 +  1189296 aaaactTACACTGCCAGCGCAAGAAGGAACGGCTGATTGAATCCGAGTTGAGATATAACGGCACCCATCAAGTTGCTCTATTATGCATCA----TTCGACCAACTCTGAATGAATGAACCATTA-GA---
i caeSp111.Scaffold626  I 152 C 0
s caePb3.Scfld02_0       4053102 125 +  4147112 AAAACTTACACAGCCAGCGCGAGTAAGAACGGCTGATTAAATCCGAGCTGCGAAATAACGGCACCCATCAAGTTGCTCTATTATGCATCA----TTCGGCCAACTCTGAATGAATGAACCATTA-GATTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   311349 122 -   357190 aaaacttACGCAGCAAGAGCAAGGAGAAACGGCTGATTGAATCCGAGCTGAGAAATAACGGCACCCATCAAGTTGCTGTATTCTGCATGACGTTTGTGTGTGTTTGTGAGTAGCTGTAAAAT--------
i caeJap4.Scaffold17990 C 0 I 159

a score=5071.000000
s ce10.chrX              5798780  93 + 17718866 TACTCATAAATCT------------------------CAGC--AATGTCGTAAATCTTGAGGTAAGTA--------------------GAATG--GG--------ACAAAAA----------AAGA-------AAGATAGACAAT----------AAGTTTG-GCACTATACCAAAA
s cb4.chrX              11127945 160 + 21540570 TACTCATGGGGAGGTGgagagagcaagagaagagagaACCCAAAAAGTCGTAAATCTCAAAGAGAGTAATTTGCGCGTTGGGCTCTCGGAGTGGAAA--------GTCATAAAATTGGACAGAAAATGGATGAAGGAAGAAAAGTGGAT------AAATCAT-AAATTATACC--AA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2490104 126 -  4500979 TACTCAGGGAGAG------------------------ACCC--AATGTCGTAAATCTCAACGAAAGTAAATTGCACAT---GTGCTCTGAGTG--AG--------GTaataa----------aaaatctaaaaagtaAAGAAAGTGAATGGGAACAAATCACGAAATTATACC--AA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    891864 109 +  1189296 ------AGGAGGT------------------------ACCC--AATGTCGTAAATCTCGGC-----CGAATTGCACAT---GCGCTTAGAGAG--AGTGTGTGCAGTAATAA----------AAAT---ACGAGACTCGAGAGGT----------AAATTAT-AGATTATACC--AA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4053227 102 +  4147112 TACC--CAGACAG------------------------CCCG--AATGTCGTAAATCTCGGCGAGAGTAAATTGCACAT---TCGGTCTGATTG--AGCGAG----GCAATAA----------AAAC---------------AGGT----------AAATTAT-AGATTATACC--AA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311471 159 -   357190 I

a score=45534.000000
s ce10.chrX              5798873 228 + 17718866 AAAGA------AA-GGTAATAAAACTGAAAGCAAAACGTAC----GGAAATCGACTGGAAAAATACGAGAGAAAAGTG-CAGG---CTTGGA----------ACAAGATCATATTACA--TGGTAATACGCAGATGCGATTCGGTGAG--GTCTTTTGAAAGATGGAGGAA----ATGGGTA-TAA------ATTTGATGAAACTTGATGAAAATTGTGTAAACGTAACAAAGAAAGAGATGG-----GAAAAGTTTTGAAGGAAAAGAAGAA
s cb4.chrX              11128105 234 + 21540570 AAGGT------AG-AGTCATAAAAATAAGAACCAAGCGGACCCG-TTGAATCGGTTAGAAA------ATAAGAGAGTG-CGGGGTTTTCAAA---GGGTTTCAGGCGATCATATTACAT-TGGTAATACGAAAATGCAATCGCGAAAACCGAGTATTGAGCATTAAAAGGA----AGGGGAA-TAAAGGAAGACTTGTAG----TTGGCACAAAT--AGAAC--------AAGGAAGAGATGGAGcaagaaaagtttt-gagaaaaagaagaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2490230 217 -  4500979 AAGGTAGGTAGAG-AGTAATAAAACTGAAAGCAAAACGGGGCCGATGGAATCGACTGGAAA------ATAAGAGAGTG-CGAG---CTCAA-----------ATGCGATCATATTACA--TGGTAATACGCAGATGCAATTGCGATGA-GGACTATTGaaagatagaagaaaatgagggGAA-CAA------------------TTGGAAcaagtaaagaaa--------aaagaatggatgaag---aaaaagtttt-gagggAAAGAAGAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    891973 191 +  1189296 AAGGT------AGAAGTAATAAAACTGAAAGCAAATCCT------CAGAATGGAGTAGAGA------ATAAAAGAGGG-CGAG---CTCAA-----------ATGCGATCATATTACA--TGGTAATAAACAGATGCAATTGCGAGAG--AACTATTGGAAAATAGGAAG-----AGATGAG-GAA------------------TTGgaacaag-aaagaaa-----------------atggag---gaatAGTTTgggatgaaaagaagaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4053329 204 +  4147112 AAGGT------AG-AGTAATAAAACTGAAAGCAAAACGG------ACATACGAATCGTAAA------ATAAGAGAGTGCCGAG---CTCAA-----------ATGCGATCGTATTACA--TGGTAATACGCAGATGCAATTGCGAGAA--GAGTATTGGAAGTT-----------AGATGGGAGAA------------------TTGGGACAAGTAAAGAAAACAGGAACGAAGGATGGATGCAC---AAATTGTTttaaagaaaacgagaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   311630 209 -   357190 AATGA------AA-GGAAGTGAG--TGAGAGCAAATCGGACT---TGGTATTGACGGGGGG------AAAATAAA-CG-CATA---CTCATACTAAGGCGAAACGAGATCATATTACACATGGTAATGCGTAAGTGCAATTCGGTGTA-GGAGATGTGAGAATTGGAACGA----ACGAGTC-TGC------ACGCaaag----ttggaaaggaataaaaaa--------gaaaggaaaatgaag---gaa--------aagggaaa------
i caeJap4.Scaffold17990 I 159 I 1065

a score=78316.000000
s ce10.chrX              5799101 615 + 17718866  
s cb4.chrX              11128339 520 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2490447 519 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    892164 584 +  1189296  
i caeSp111.Scaffold626  C 0 I 142
s caePb3.Scfld02_0       4053533 484 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I

a score=-14490.000000
s ce10.chrX              5799716 144 + 17718866 TTTATCTATCATAATTTTTTCTATTATTTTTGATGTT-------CATATTTGAATTGAA--AATTCACAATTTTTATCTAGAAATTGTAAGCATTTG--AACATGTAAAACTTTTCAAAATTACTTGAAAAACTAAAATATTCTAATAATTTGGA
s cb4.chrX              11128859 111 + 21540570 ---------------------------------------tgaaatatttttgaataaaatcgaagtataatttt----tgagaagtttttctatttATGAAATCGTTAAAATTTGGCAGATTGATA-AAAGCGTGGAATGTTTCAAAGTATTGGA
i cb4.chrX              C 0 I 33
s caeRem4.Crem_Contig0   2490966 102 -  4500979 ----------------------------TTCGAGGTAGAGGAAATATTT---GATTAGATCTaattataat--------------tgtttttgttca--GAATTGTCTGAATTTCGTAAAACTGTA-----CGTAGAAGAAtcctaaa-actgaa
i caeRem4.Crem_Contig0  C 0 I 1
s caePb3.Scfld02_0       4054017  91 +  4147112 ------tattacaattctt-------tttttactgtgGAACTAATAACTTTGAAT-AGACCGACAGATGAc-------tagaaaatgtgattttttg--------------tttagcAAACTAAGA-----------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e caeSp111.Scaffold626    892748 142 +  1189296 I

a score=-4691.000000
s ce10.chrX              5799860 70 + 17718866 TTTTTATGTGTATTTAGAATAGATCGGCACTATCTTACCTTTAATAATATTTGTTCAGTTTTTTTTACAA
s caeRem4.Crem_Contig0   2491069 45 -  4500979 ---------------aaaactgagtgGAATCAAC--------AATA--ATTAGTCCAGAtgtgtttaaaa
i caeRem4.Crem_Contig0  I 1 I 5
s caePb3.Scfld02_0       4054108 12 +  4147112 -----------------------------------------------------Tc----tctgtctgaa-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e cb4.chrX              11128970 33 + 21540570 I
e caeSp111.Scaffold626    892748 142 +  1189296 I

a score=-13062.000000
s ce10.chrX              5799930 167 + 17718866 AAAATGTTAAAAAATGAATGTTTGAAAATTCGGGGGGTTATTTTAAAAGTAAACTTGAAACttttattattaaaaatt--gaaatt---aaaaattttgaaaacaaattatttaaaGTGCCCAATCAAAGGAAGTTTTGCTAAAATAATTtaccgtatttcttcaattaata---
s cb4.chrX              11129003 111 + 21540570 aaaatgagaaagaa---------------------------atgaacaaaaaacgtGAAGATTTTCTGAGAAGCAATT--GGACCTGCCATGTGGTtctcaaggaaaa------------------aaaagatgacctC--------------CGAATTGAGCCAGGAAata---
i cb4.chrX              I 33 C 0
s caeRem4.Crem_Contig0   2491119 117 -  4500979 aaaacttgaaaagc---------------------------atgtccagtataaacaaaagcgtcctagaaaaaagtt--aaatct---AAATATTTCTGAATCAGAAC---------------TCACAATGAAACTTCTTG--------CATCCAACTTTCTCAAGTAAGA---
i caeRem4.Crem_Contig0  I 5 I 3
s caePb3.Scfld02_0       4054120  97 +  4147112 aaaataaacaaaaa---------------------------ct--ctGAGATAAGCGACTTTCTTCTCATGggcattttcaaactt---------tttcgaattaaCA------------------AAAAT----------------------CTATCTCTATCTGGAACTAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e caeSp111.Scaffold626    892748 142 +  1189296 I

a score=-4916.000000
s ce10.chrX              5800097 67 + 17718866 ttgcaattctattgttaaactttgccagtttatatctcagttGTCGCTTGTTTAATTTCAAACTGGA
s cb4.chrX              11129114 10 + 21540570 --------------------------aacttctaaa-------------------------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4054217 52 +  4147112 TTCTAATTCCAACCT---ACAATGAAACCTTTTGCACCAAGTTCC------------CCAAGATAGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e caeSp111.Scaffold626    892748 142 +  1189296 I
e caeRem4.Crem_Contig0   2491236  3 -  4500979 I

a score=-1692.000000
s ce10.chrX              5800164 126 + 17718866 AAAAATTGTTTTTTTTATCGTTTTTATGTATATTGTTTATTGATA-TCTTCGAAGTGATAGAGGGATGCAAT-ACTAGTAGCAAAAATACGGTAGGTTTCGAGTAATCAGTACCGAGAGTTA-------AACAAA
s cb4.chrX              11129124  89 + 21540570 aaaa-----------------------------cgTTTACTCCCAGTCTTCG----GACGTAGGCATGAAACCACTCACAACCTCAATAT-------------TGAACCCTACAATGAGTTATTGTGCTCctaag
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4054269   0 +  4147112 C
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e caeSp111.Scaffold626    892748 142 +  1189296 I
e caeRem4.Crem_Contig0   2491236   3 -  4500979 I

a score=250.000000
s ce10.chrX              5800290 28 + 17718866 AAACTTCCTTCTCAAAAGTTCCATCACG
s cb4.chrX              11129213 26 + 21540570 aagtttttttttcgaagagtGGTAGA--
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    892890 28 +  1189296 AAACTTCTTGCTCCAAGTTcttaagaag
i caeSp111.Scaffold626  I 142 I 4
e caePb3.Scfld02_0       4054269  0 +  4147112 C
e caeJap4.Scaffold17990   311839 1065 -   357190 I
e caeRem4.Crem_Contig0   2491236  3 -  4500979 I

a score=7526.000000
s ce10.chrX              5800318 11 + 17718866 AAAAGTGTCTC
s cb4.chrX              11129239 11 + 21540570 AAACGTACTCC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2491239 11 -  4500979 AAAAGTACTCC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    892922 11 +  1189296 aaaagtactCC
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       4054269 11 +  4147112 AAAAGTACTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   311839 1065 -   357190 I

a score=78609.000000
s ce10.chrX              5800329 112 + 17718866 AAAACTACT---CTCCTTGTAACGTTTACATGAATAAATTGTGAAGGACC-------------------TCTCTCAGTGAAAGTACGAGGC---------------ATCGCCCTCC-------ACAACGAAGGATGTCTTATTATTACACACTGAA---
s cb4.chrX              11129250 144 + 21540570 GAAACTACTC--CTGTTTGTAGAGTTTACATGAATAAATTGTGAAGGACTGGG-------TGGGGGCCTGCTCTCAGGCAAAGTACGAGACGAGATCCACTCCACAA---CTCTCCACACACGAAGAGCAAGGATGCCTTATTATTACACAGTGAG---
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2491250 111 -  4500979 GAAACTACT---CTCCTTGTAGCGTTTACATGAATAAATTGTGAAGGACTGGG-------GG-------GCTCTCAGTCAAAGTACGCGAC---------------A---TCCTCC-------AGGACGAAAGATGCC---TTATTACACACTGAA---
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    892933 111 +  1189296 GAAACTACT---CTTCTTGTAGCGTTTACATGAATAAATTGTGAAGGACTGGA-------GG-------GCTCTCAGTCAAAGTACGAGAC---------------A---TCCTCT-------ACGACGAAAGATGCC---TTATTACACACTGAA---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054280 116 +  4147112 GAAACTACT---CTTCTTGTAGCGTTTACATGAATAAATTGTGAAGGACTGGAG----GGGG-------GCTCTCAGTCAAAGTACGAGAC---------------ATC-TCCTCT-------ACGACGAAAGATGCC---TTATTACACACTGAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   312904 115 -   357190 AAAAGTACTCTACTCCTCTAAGCGTTTACATGAATAAATTGTGAAGCATTGGGGCGAAGGGT-------GCTCTTAGTCAAAGTACGAGGC---------------A---CAACCG-------A---------GCGCC---TTATTACACACTGGCTAA
i caeJap4.Scaffold17990 I 1065 C 0

a score=476.000000
s ce10.chrX              5800441 1 + 17718866 G
s cb4.chrX              11129396 1 + 21540570 G
i cb4.chrX              I 2 C 0
s caeSp111.Scaffold626    893044 1 +  1189296 G
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054396 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   313019 1 -   357190 A
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2491361 1 -  4500979 I

a score=2865.000000
s ce10.chrX              5800442 2 + 17718866 GA
s cb4.chrX              11129397 2 + 21540570 GA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2491362 2 -  4500979 GA
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    893045 2 +  1189296 GA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054397 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   313020 2 -   357190 GA
i caeJap4.Scaffold17990 C 0 C 0

a score=910.000000
s ce10.chrX              5800444 1 + 17718866 T
s cb4.chrX              11129399 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2491364 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    893047 1 +  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   313022 1 -   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4054399 1 +  4147112 I

a score=42347.000000
s ce10.chrX              5800445 430 + 17718866  
s cb4.chrX              11129400 422 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2491365 394 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    893048 383 +  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054400 423 +  4147112  
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   313023 477 -   357190  
i caeJap4.Scaffold17990 C 0 I 52

a score=-11077.000000
s ce10.chrX              5800875 10 + 17718866 GGATTTTCTG-------------------------------------
s cb4.chrX              11129822 10 + 21540570 AGATCTTCAG-------------------------------------
i cb4.chrX              C 0 I 76
s caeRem4.Crem_Contig0   2491759  5 -  4500979 -----TTCTG-------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    893431 39 +  1189296 -----TACTCCATATTCAACATCATATAAAATGT---GATTTTGGCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054823 39 +  4147112 -----tgctGCATACTC--CTACGTACAGGATGTatagatttt-ctg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313500 52 -   357190 I

a score=-10915.000000
s ce10.chrX              5800885 57 + 17718866 -------TGACGCGGATTATTGCTTTCAAAG--TTGCTGAAAAACTTATAATTCTAGTATATCCGC----------------
s caeRem4.Crem_Contig0   2491764 52 -  4500979 --------CACACTGAATAT-------------GGAATCGAGAGATTTTGAC--TAGCACCA-------CTAGATTATTCAT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    893470 82 +  1189296 AAATATTTCACGGATAATCCAccggaaaaagagagaatgggAGTATTAAGACGTCAGTAttgtttctcgaaaaaggATCGAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054862 67 +  4147112 aaa---ctgatagTTAATCC-----CAaaaccaaaactgaaaatattttg----cagAATGTTTTC---ATAAATGATTTAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313500 52 -   357190 I
e cb4.chrX              11129832 76 + 21540570 I

a score=38.000000
s ce10.chrX              5800942 1 + 17718866 C
s caeSp111.Scaffold626    893552 1 +  1189296 C
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4054929 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313500 52 -   357190 I
e cb4.chrX              11129832 76 + 21540570 I
e caeRem4.Crem_Contig0   2491816 1 -  4500979 I

a score=-22552.000000
s ce10.chrX              5800943 48 + 17718866 GAACATCAA---------AATCGT-TAGAA----AAAATTTGTCATATGTTTGGAAAATTAA------------------------
s cb4.chrX              11129908 34 + 21540570 ------------TGAC--CATCAATTCGAA----GCAAACTGATATATTC----------AA------------------------
i cb4.chrX              I 76 I 6
s caeRem4.Crem_Contig0   2491817 32 -  4500979 ------------------Catgca-tcaaa----aaaatttgtaagATAC-------TAGAA------------------------
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold626    893553 45 +  1189296 AA----GAAGCTTTATGGAGTGTTCTCA------AAAAGCCGTCTTACAT-------ACTAA------------------------
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       4054930 51 +  4147112 GAAGTTGAAAATTGGCAGAATACTCTCAAG----AAAAACTGACACGAAT-------ACTAA------------------------
i caePb3.Scfld02_0      C 0 I 174
s caeJap4.Scaffold17990   313552 52 -   357190 ---------------------------aaagagcaaaaccggaaaaaaat-------gcaaacattCctttttttgtgacgtcttt
i caeJap4.Scaffold17990 I 52 C 0

a score=-35251.000000
s ce10.chrX              5800991 141 + 17718866 TTCACTAATTTTTTTTTCTTGTTTGTTGTATTGTATTT----AAAACATATGCttataattaattttaaattttaaaCTATATGAACTATCTATTTGGAGAGCATTTTCAGCAAACTGGCAAAT--TATTA---GTGAGTATAACAATAT
s cb4.chrX              11129948  88 + 21540570 tgcaaaaattttgcaacG-----------AAAGCAACTCTCAAAAGATAATG---AG----------CTATGCGATA----------TAGTTTTCT-----------------AACAAGCCAAA--TAATG---------ATtctaataa
i cb4.chrX              I 6 I 15
s caeRem4.Crem_Contig0   2491855  62 -  4500979 CACgaacatgtttt----------------------tttccaggaaaaaa-------------------aTGCGG--------------------------------------AACATACCAAAATTattg---------atataaaaaa
i caeRem4.Crem_Contig0  I 6 I 3
s caeSp111.Scaffold626    893606 143 +  1189296 TTTCAATGttctttttcgtcatttcGTA-GTAGtcgcttcaaaaaaactatgtctagaacacttttcttattcaatAATGTAT---CTAGGATTCTAGTGTATCtgctcagc-attatgctcag--cattatagctcagcaaataaaaaa
i caeSp111.Scaffold626  I 8 I 14
s caeJap4.Scaffold17990   313604 111 -   357190 ttcagtgtttgttttttttttgctttcttcttttctttccct--------TGCTCAAAATTTCTTATCTCTTCTACA-TATTTATGACGGTGTTTT-----------------CATAATCtaat-ttatca---------acaaaaa---
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4054981 174 +  4147112 I

a score=0.000000
s ce10.chrX              5801132 20 + 17718866 TTCATGCGTTTTTGTCTGGA
e caePb3.Scfld02_0       4054981 174 +  4147112 I
e caeJap4.Scaffold17990   313715  0 -   357190 C
e cb4.chrX              11130036 15 + 21540570 I
e caeSp111.Scaffold626    893749 14 +  1189296 I
e caeRem4.Crem_Contig0   2491917  3 -  4500979 I

a score=0.000000
s ce10.chrX              5801152 14 + 17718866 GATTGAGATTTTGT
e caePb3.Scfld02_0       4054981 174 +  4147112 I
e caeJap4.Scaffold17990   313715  0 -   357190 C
e cb4.chrX              11130036 15 + 21540570 I
e caeSp111.Scaffold626    893749 14 +  1189296 I
e caeRem4.Crem_Contig0   2491917  3 -  4500979 I

a score=95895.000000
s ce10.chrX              5801166 72 + 17718866 AAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGAC
s cb4.chrX              11130051 72 + 21540570 aaaaggaatGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGAC
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2491920 71 -  4500979 aaaaagaat-ggcaGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGAC
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    893763 72 +  1189296 aaaagGAATGGGCCGAAccggggattgaacccgggACCTCTCGCACCCAAAGCGAGAATCATACCACTAGAC
i caeSp111.Scaffold626  I 14 C 0
s caePb3.Scfld02_0       4055155 72 +  4147112 aaaataaatgggccgaaccggggattgaacccgggacctctcgcacccaaagcgagaatcataccaCTAGAC
i caePb3.Scfld02_0      I 174 C 0
s caeJap4.Scaffold17990   313715 72 -   357190 aaaaagaatgggccgaaccggggattgaacccgggacctctcgcacccaaagcgagaatcataccactacac
i caeJap4.Scaffold17990 C 0 I 2098

a score=21609.000000
s ce10.chrX              5801238 59 + 17718866 CATTCGGCCGTGCTTCTG-TTTCTACTAGACTCGTGTGTTATTCCGCTCACTTTCCAACT
s cb4.chrX              11130123 60 + 21540570 CATTCGGCCACACTATTCATCGCGGACATTTCCCAGTGTCAATCCACACACTCGCTGCTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2491991 59 -  4500979 CATTCGGCCACGAAATCC-TTACATTCACTCTCCAGTGTCATTCCACTCACTCGCTCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    893835 59 +  1189296 CATTCGGCCACACTCTCT-TCCCATCCACATTCTAGTGTCATTCCACTCACTCTCCAATT
i caeSp111.Scaffold626  C 0 n 0
s caePb3.Scfld02_0       4055227 59 +  4147112 CATTCGGCCACAAGTTCT-TCTCATCCACTTCTCAGTGTCATTCAGCACACTCTCACACT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313787 2098 -   357190 I

a score=-6894.000000
s ce10.chrX              5801297 62 + 17718866 ----TCTCCCTTT------------TACACTCCATTTTGTGTATGA-----GGGAGAGAAGTATGAAGAGAATGAGGGAAGAA--
s cb4.chrX              11130183 82 + 21540570 ---TTCATTCTTTATTTTCTACCGCCATCCACTGCTTTCTTCGCGCCACTGGATGAGAGagttgaaaaatggagagaagtTAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2492050 48 -  4500979 ---TTCCTTCACT------------------CCGTTTCCTCTGCGCCTCAAGCTGCGGGCGTAACAAAA----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4055286 56 +  4147112 TTACTCACTCTCT-------------TCCCAGCGTTTTCT---CGC-----------GGAGCGAAAAAATAACGATGAATGGA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313787 2098 -   357190 I
e caeSp111.Scaffold626    893894  0 +  1189296 I

a score=5141.000000
s ce10.chrX              5801359 56 + 17718866 -----AACGAAGGAATGATAGAAATGAGAGACG-----ACAGAA--AGACAAGTGAAATTACATTAGT
s cb4.chrX              11130265 55 + 21540570 -----GACAGTGAGGCGGTGGGAGTGTGAACAG-----GCGGAA---AACAAGCGGAATGACACTAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2492098 59 -  4500979 ------GCAGTGAATAGATAGGAGTGAGAGGAAAGACTATGGAA---TTTGGGTAGAATGACACTTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    327097 53 -  1189296 -----AACAAAGGG-----AGAAGTGAGGGAAA-----ACAGGGCATAATATGTGAAATGACACTTGC
i caeSp111.Scaffold626  I 31789 I 408
s caePb3.Scfld02_0       4055342 56 +  4147112 TTGTGTGTAATGAG-----AGGAAAGCGGGAAA-----AGAGAG--TGATATGTAGAATGAGACCTGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313787 2098 -   357190 I

a score=-783.000000
s ce10.chrX              5801415 21 + 17718866 GAGGAACGAAGTTGCACTCAT
s cb4.chrX              11130320 21 + 21540570 CAGGAACGCTCAGAAGTTTGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2492157 21 -  4500979 GATGAACGGAGTGAACACTGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   9558940 19 - 33334924 gtaaGACGCAG--AACTCGGC
i caeSp111.Scaffold629  n 408 C 0
s caePb3.Scfld02_0       4055398 21 +  4147112 GAATAACAGAGTCAATTGTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   313787 2098 -   357190 I

a score=82138.000000
s ce10.chrX              5801436 81 + 17718866 GGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGG-GTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATCTATTTT
s cb4.chrX              11130341 81 + 21540570 GGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGG-GTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCattcctttt
i cb4.chrX              C 0 I 148
s caeRem4.Crem_Contig0   2492178 81 -  4500979 GGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGG-GTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGgcccattcttttt
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold629   9558959 81 - 33334924 GGCCGGATGGTCTAGGGGTATGATTCTCGCTTCGG-GTGCGAGAGGTCCCGGGTTCGACTCCCGGTTCGGCCCAAAtcattt
i caeSp111.Scaffold629  C 0 I 1
s caePb3.Scfld02_0       4055419 80 +  4147112 GGCCGAATGGTCTAGTGGT-TGATTCTTGATTCGACTTGCGATAGAAACCGGGAACGAC-CCCGGCTGGTGCCATACCACTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   315885 81 -   357190 GGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGG-GTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAttcgtttt
i caeJap4.Scaffold17990 I 2098 I 54

a score=-265.000000
s ce10.chrX              5801517 1 + 17718866 G
s caeRem4.Crem_Contig0   2492280 1 -  4500979 t
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold629   9559041 1 - 33334924 t
i caeSp111.Scaffold629  I 1 I 1
s caePb3.Scfld02_0       4055500 1 +  4147112 G
i caePb3.Scfld02_0      I 1 I 2450
e caeJap4.Scaffold17990   315966 54 -   357190 I
e cb4.chrX              11130422 148 + 21540570 I

a score=387.000000
s ce10.chrX              5801518 4 + 17718866 CGGT
s caeRem4.Crem_Contig0   2492281 4 -  4500979 tggt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold629   9559043 4 - 33334924 caat
i caeSp111.Scaffold629  I 1 n 1
e caePb3.Scfld02_0       4055501 2450 +  4147112 I
e caeJap4.Scaffold17990   315966 54 -   357190 I
e cb4.chrX              11130422 148 + 21540570 I

a score=797.000000
s ce10.chrX              5801522 63 + 17718866 GTGAGAC-TTGATCGTTGTTACTAAATATGTCTTTAAACAAAAACAAACAAGTTATTTGTGTTA
s caeRem4.Crem_Contig0   2492285 53 -  4500979 ATGAATCATAAATGGTTGT-----------TCCttataaaaaaataatctaGTGCATTGTATTA
i caeRem4.Crem_Contig0  C 0 I 385
e caePb3.Scfld02_0       4055501 2450 +  4147112 I
e caeJap4.Scaffold17990   315966 54 -   357190 I
e cb4.chrX              11130422 148 + 21540570 I
e caeSp111.Scaffold629   9559047  1 - 33334924 I

a score=0.000000
s ce10.chrX              5801585 131 + 17718866 ACAGTAATTTGCGTTTTAAATGCATTTTTAAACAGATTGCTGAACGTTACAATAACTGGCAAAATAAACTCGCTGGAATGGCGTTGTTTTATTTATAGAAGCTCCATTCattttttctttaaaaaatattt
e caePb3.Scfld02_0       4055501 2450 +  4147112 I
e caeJap4.Scaffold17990   315966  54 -   357190 I
e cb4.chrX              11130422 148 + 21540570 I
e caeSp111.Scaffold629   9559047   1 - 33334924 I
e caeRem4.Crem_Contig0   2492338 385 -  4500979 I

a score=-2450.000000
s ce10.chrX              5801716 707 + 17718866  
s cb4.chrX              11130570 604 + 21540570  
i cb4.chrX              I 148 C 0
e caePb3.Scfld02_0       4055501 2450 +  4147112 I
e caeJap4.Scaffold17990   315966  54 -   357190 I
e caeSp111.Scaffold629   9559047   1 - 33334924 I
e caeRem4.Crem_Contig0   2492338 385 -  4500979 I

a score=-4007.000000
s ce10.chrX              5802423 75 + 17718866 --------AGTTCTCAGCAAT-AAATGGGAAATTCCAATC-AAATACCAAACTTCAGGAATCACGAAAAGAAGCTACA----GCTGAGC-
s cb4.chrX              11131174 69 + 21540570 ATTTCTTTGAGTCGCACCGAATTGCTGAACACCACCCATGGAAATACCAGAA--------------------ACCACCACTTGCTGAGT-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    327558 71 -  1189296 --------AGGTCTCAGCAAA------AGCAACAACAGTCAAAAGCCCGGAATATCGAGATT-----CATAGACCAAAATGTGGTGCGGG
i caeSp111.Scaffold626  I 408 C 0
e caePb3.Scfld02_0       4055501 2450 +  4147112 I
e caeJap4.Scaffold17990   315966 54 -   357190 I
e caeRem4.Crem_Contig0   2492338 385 -  4500979 I

a score=7509.000000
s ce10.chrX              5802498 16 + 17718866 AGTAAATTCTACAAAA
s cb4.chrX              11131243 15 + 21540570 -CTAAACTCTACAATG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2492723 16 -  4500979 AGTAAAATCTACaaag
i caeRem4.Crem_Contig0  I 385 C 0
s caeSp111.Scaffold626    327629 16 -  1189296 GATAAATTGTacaatg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4057951 16 +  4147112 AGTGAGTTTtacaaag
i caePb3.Scfld02_0      I 2450 C 0
e caeJap4.Scaffold17990   315966 54 -   357190 I

a score=158477.000000
s ce10.chrX              5802514 254 + 17718866 AAAAAAAGAATGAGGCGGATTTAGAGTGGTGTGAGAGTGATTGAAGAAAGAACTAGTCCTTAG--AAAGGGCTCTAAAGAAGCCAGTGAATCC---TCGCTTTTCTTTTTTC--CCGCAAAGTGAATGA--GCAAAAGATGTGAG-AAGGAGACGA------TGGAGAAAAGAAAGAAGGACA-AGCCAAT---AGAACATTCTCACTCTTTTCAACAACTACAACTACCCAGAAGACTCATTTAATTTGGAG---AAAACGAAATGTAAGTGGTCA
s cb4.chrX              11131258 252 + 21540570 GAAAAAG--------GGATTTAGAAGTGATGTGAGAGTGATTGAAGAAAGAACTAGTCCTTAG--AAAGAGCTCAAAAGAAGCCAGTGAATCCCTCCTCCCTTTCTTCCCT---CCGCAAAGTGAATGAGCGCGAAAGAAGTGAGAAAGAAGGAGCTGAACAAGAAGACGAAATAGAA-GGCG-AGCCAAT---AGAACATTCGCACTCTTTTCAACAACTACAACTACTCA-AAGGCTCATTTAATTTTGGT---GAAACCGAA--GAAG-AGGCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2492739 248 -  4500979 gaaaaaa--------gggattTAGAGTGGTGTGAGAGTGATTGAAGAAAGAACTAGTCCTTAG--AAAGAGCTCAAAAGAAGCCAGTgaatcc--tcttcttttcttctttc--ccgcaaagtgaatga--gcaaaagatgtgag-aagaagaaggagaaaaagtaggagaaaaagaa-gacg-agcCAAT---AGAACATTCGCACTCttttcaacaacttcaacTACCC--AAGGCTCATTTAATTTGGGA---AAGGGCAGA--CAAGTGGGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    327645 252 -  1189296 gagaaaaaaagga--gggaTTTAGAGTGGTGTGAGAGTGATTGAAGAAAGAACTAGTCCTTAG--AAAGGGCTCAAAAGAAGCCAGTGAAtcc--ttcccttttcttctttc--ccgcAAAGTGAATGA--GCGAAAGATGTGAG-AAGACGAAGG------ATgagacgaaaaagaa-gacg-agcCAAT---AGAACATTCGCACTCTTTTCAACAACTACAATTACCCA-AAGGCTCATTTGATTTGGGACGGAAACGACGT--CGAATGGTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4057967 244 +  4147112 gaaaaaa---------ggatttaGAGTGGTGTGAGAGTGATTGAAGAAAGAACTAGTCCTTAG--AAAGGGCTCAAAAGAAGCCAGTGAatcc---tctcttttcttctttc--ccgcAAAGTGAATGA--GTGAAAGatgtgag-aagaaaaag---------gagaggagaaagaa-gacg-AGCCAATAGAAGAACATTCGCACTCTTTTCAACAACTACAACTTCCCA-ACGGCTCATTTAATTTGGGACGGAAAAGAAGA--CAAGTGGTGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   316020 216 -   357190 -AGAAAA--------AGAATAAGGA------CGAGAGTGATT----CAAAAACTAGGCCTTCATTGAAGGGCTCAAAAGAAGCTATcctcttt--gttttctttcttcttcccTCCGCAAAGTGAATGA--GAAAACGATGTGTG--------------------------AAAAGAC-GACGTCGCCGGCAG-AGAACATTAGCACTCTTTGAATTCGCCCAAA--ACCTT-AGTGCTCGTTTAATTTGG-----AATGCAATG--CGGTCAGTCA
i caeJap4.Scaffold17990 I 54 I 517

a score=97294.000000
s ce10.chrX              5802768 200 + 17718866 CCAACA---------------CCAGCTGCCCGAATTGTCCACCA--AGTCATG---TTTATAAGTACCAATCTGATTTTGATGTATGCCGACCTGATTACT---CACGCGGTTGAATAATTCATTTGTGGAGGTTGGTGGCTTGGCCACTCAAACGGAACGAAACTGCG--------CAAGCTTGACTTCACTCGAGACAATGAAC---GTGGTCTT------AAATTTACTGGAAAAAG
s cb4.chrX              11131510 210 + 21540570 CCAAAA---------------CGATCTGC----AGCTGTCAAAATGTGCAGTGCCTCCCATAAGTGCTAATTTGATTTTAATGGAAGCCGACCTGATCGCTGGCGGCATGGCTGAATAATTCATTTGTGGTGGTTGG----AGGGTTACTCAAACGGAACGAAAACACATAACAGGTCAAGCTTGACTTCACTCAAGACAAT-------GAGACCCCAAAAGGCAATTTATTGGAAAAAG
i cb4.chrX              C 0 I 130
s caeRem4.Crem_Contig0   2492987 195 -  4500979 CCACAA---------------CGACGTTC----AGCTGCCAAAA--AGCAATG---TCCATAAGTGCTAATTCGATTTTGATGTGAGCCGACCTGATCGCT---CACCCAGTTGAATAATTCATTTGTAGAGGTTGG----TTGGTCACTCAAACGGAACGAAAAT-----ACAAGATAAGCTTGACTTCACACGAGACAATTGAA---GTGGTGCC------CAATTTACTGGAACAAA
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    327897 216 -  1189296 CCAAATGGGGTGAGGGGAAAGCCAGCTGC------CCCCGAAAA--AGGCATG---CCCATAAGTGCCAATTGGATTTTGATGTGAGCCGACCTGATTACT---CACACGGTTGAATAATTCATCTGTGGAGCTTGG----TCGGTCACTCAAACGGAACGAAAATACATAACAAGATAAGCTTGACTTCACTCAAGACAATTGAAGTGGGGGTACT------CAATTTACTGGAACAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4058211 214 +  4147112 ccaaat----cgaaaagaaaacgagcTGCC---AGCTGCCAAAA--AGCCATG---TCCATAAGTGCCAATTGGATTTTGATGTAAGCCGACTTGATTACT---CACACGGTTGAATAATTCATCTGTGAAGGTTGG----TCGGTCACTCAAACGGAACGAAAATACATAACAAGATAAGCTTGACTTCACTCAAGACAATTGAAGT-GGGGTGgc------caattttctggaaaaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   316236 517 -   357190 I

a score=-1715.000000
s ce10.chrX              5802968 17 + 17718866 GTGTT------------------------TGCTAAAC-------------AATG
s caeRem4.Crem_Contig0   2493183 54 -  4500979 ACAATAGCAGAATccttcaaaaatcttatttttcaatattcttcttttcaaatg
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    328113 12 -  1189296 -----------------------------TTCTCAGC-------------AATG
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       4058425 12 +  4147112 -----------------------------tgctAAAC-------------AATG
i caePb3.Scfld02_0      C 0 I 1241
e caeJap4.Scaffold17990   316236 517 -   357190 I
e cb4.chrX              11131720 130 + 21540570 I

a score=1166.000000
s ce10.chrX              5802985 32 + 17718866 CTCAAGTGT---CAAAACAATTTCAAAAAACAATT
s caeRem4.Crem_Contig0   2493237 35 -  4500979 cctagttgtgaaaataaaaatctgaaaaaaatatt
i caeRem4.Crem_Contig0  C 0 I 144
s caeSp111.Scaffold626    328127 32 -  1189296 CCTGCGTGT---AAGAGAATTTACAGAGAAAGAGT
i caeSp111.Scaffold626  I 2 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e cb4.chrX              11131720 130 + 21540570 I

a score=-9.000000
s ce10.chrX              5803017 16 + 17718866 TTTTATTGACGGCGTC
s caeSp111.Scaffold626    328159 16 -  1189296 TCTTTTGTAATACttc
i caeSp111.Scaffold626  C 0 I 120
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e cb4.chrX              11131720 130 + 21540570 I
e caeRem4.Crem_Contig0   2493272 144 -  4500979 I

a score=0.000000
s ce10.chrX              5803033 62 + 17718866 AGTAGTTCCAACGGGTGACGGTATCGAAGTAAAGATATTGCTGTATATAATATATCACTACA
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e cb4.chrX              11131720 130 + 21540570 I
e caeSp111.Scaffold626    328175 120 -  1189296 I
e caeRem4.Crem_Contig0   2493272 144 -  4500979 I

a score=625.000000
s ce10.chrX              5803095 36 + 17718866 TCATAACATCATAACATTGTCATAACATCATCATCA
s cb4.chrX              11131850 35 + 21540570 Tcttaac-tgataaagtattctTCATAACATTacca
i cb4.chrX              I 130 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeSp111.Scaffold626    328175 120 -  1189296 I
e caeRem4.Crem_Contig0   2493272 144 -  4500979 I

a score=-3818.000000
s ce10.chrX              5803131 53 + 17718866 TAACAAGCCTTTCA-------CAAATAAGATCCGCAGT---CTCCTGTAGTCTCTATTAGTGC-
s cb4.chrX              11131885 61 + 21540570 --taaaaaatttcaaagttttttcagaaaaccagaatATTGTCAAtgt-tttacaatttttttt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    328295 51 -  1189296 TATCAAGTATTCCA---CCCTAATCGAGAATCTGAAGA---CCAATG------CCGTTATTCT-
i caeSp111.Scaffold626  I 120 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeRem4.Crem_Contig0   2493272 144 -  4500979 I

a score=-26280.000000
s ce10.chrX              5803184 143 + 17718866 TGCACCCCTTGCAACCATTTCTGTATTTTGAACAAAGTTACATTTTTCATGTTTTCTGTTTGATGATTTGCCACTTCTTCACAAAAAAAACCTG------------TCAGGTTCAGTACCATTTCTATAACAATATCTCACTAGCTCAAAACTGC----------------------------------------------------------------------------------------
s cb4.chrX              11131946 188 + 21540570 ----------tccaat---------tataaatcataatttt----------tttgcatattcACCA--CAAACAATCTTAACGGAAACGATTGTTTTAATTCATTATCAGCCACAAA--TATTCCCAGGTAAACTTTGATCAagatcaaaattccaattc-------------cgAAATCTATCCAC-------TTCTACTAACATCAATCAGCCATGAATCCAGCAACTCGATCCAGTAT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493416 178 -  4500979 TGtacacttttcaaat---------ttctgaatttaacGTTAtccttaaaattttcaaattcac-------acATATTTAATTTAGACGCTTTT------------TCGGAGACAAG------------------TTTGTCATTCTCAAGATTCCAATTCACTACCGTTCGAACGCGTTCTCTCCACGAATGGTTTGCATTCCTATCAGATA-----------------TCGATACAATGT--
i caeRem4.Crem_Contig0  I 144 C 0
s caeSp111.Scaffold626    328346 118 -  1189296 --TACATCACTCA------------TAGGAAACCCTGTTTTGTCCAGGATCTTatctacttttttg-----aagattttatGGAAAACTGCCTTTTC---------TCAG-------------------------TCCTTGAAGATCATAATTTCAA------------------------------------------------------------------------TCGATGAAAAACGC
i caeSp111.Scaffold626  C 0 I 53
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I

a score=-3154.000000
s ce10.chrX              5803327 58 + 17718866 TCTAA---------AATTTGAA---TTGCCGCGCA-AATTCTTGACTTTCCGG---------TTTTTTACTTTTGATGCA
s cb4.chrX              11132134 78 + 21540570 TCCACTTAtccgagaattcaaaaagtgaccGTTCGCATTGCGTCACTCGTTTGAAACCCT--GTTTGGGCGTAGATTGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493594 69 -  4500979 TCTAATAAATC---AATT-------TCCCTGTTCA-AGTATTCCACTTTTCGAGAATCCGAAGATCGGTCATTGCTTGTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeSp111.Scaffold626    328464 53 -  1189296 I

a score=-5354.000000
s ce10.chrX              5803385 29 + 17718866 ----------------------AAAATCAAAA-AATTTGCATCTGGGTTTTT
s cb4.chrX              11132212 33 + 21540570 TCAATCATTT-------------CCATTAATTGGAAACagatcttt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493663 45 -  4500979 TTAATCATCTGGACCCGGTTTGAACAGCAATT-GATATGAATCTCT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    328517 22 -  1189296 ----------------------AGAATCGACA-AATTTGGTTTTC-------
i caeSp111.Scaffold626  I 53 I 30
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I

a score=-4190.000000
s ce10.chrX              5803414 42 + 17718866 ------AATGACTTTTGA-------------CT---GAAAATCACAATTTG--------AAA----------------------CTGCTCTTGG
s cb4.chrX              11132245 65 + 21540570 tcagaaaaaaacgttCTGAATCGTTTATCGTCtatggagagaaa---------------aaaatcatctc--------------tTGATAGTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493708 89 -  4500979 TTTG--AATAACTTTGGGAGTGGATTTTAATAT---GAAATAAACTATTTGGTTCTTGTAAAAATATATCGGCGGTACAAACCATTGATGATGG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeSp111.Scaffold626    328539 30 -  1189296 I

a score=-3823.000000
s ce10.chrX              5803456 18 + 17718866 --AGAATTTTCAAATACTTT--
s cb4.chrX              11132310 22 + 21540570 AGCGATTCTGGAACCGGACTCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493797 21 -  4500979 AG-AATATTGTCAAAATACCTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    328569 18 -  1189296 --aaaatcttccgatgtttt--
i caeSp111.Scaffold626  I 30 I 41
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I

a score=-6588.000000
s ce10.chrX              5803474  67 + 17718866 CAAAACT-TCCACAT--------------------ACAAAT------------------------------------------------------A--TAAAAGTTTCAAATTTTCTAGAAGACTTCCAAATTCT---------------------------------------ACGGTCATT
s cb4.chrX              11132332 105 + 21540570 TTCAATTGTTTATACTGTTTTTGATTGGGCTACCAACAGGT-------------------------------------TGTTTATAATAAttgcaaatttgaaatttcaaatcttttgtta-atttccctatttt----------------------------------------tgaatttt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493818 178 -  4500979 CAAAATT-TAGATACATTTTAAAGCTGTGGGAACAATACATAATTCTACCTACCTCACGATTCGACTTTGCTGTGTTCTGTCTTCTATTATT---AGTTAgacatttgaaatttctcatca-ACTTTCatactcttttttcaaagaaatcgaACGTTATCTTATCTGTAGAAGAATGACTGTC
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4058437 1241 +  4147112 I
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeSp111.Scaffold626    328587  41 -  1189296 I

a score=-807.000000
s ce10.chrX              5803541 4 + 17718866 TTTC--
s cb4.chrX              11132437 6 + 21540570 ctttgc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2493996 6 -  4500979 CTTGGC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4059678 4 +  4147112 tttc--
i caePb3.Scfld02_0      I 1241 C 0
e caeJap4.Scaffold17990   316236 517 -   357190 I
e caeSp111.Scaffold626    328587 41 -  1189296 I

a score=-6036.000000
s ce10.chrX              5803545 17 + 17718866 --------------------AAGTTTATCTTGTCGTA-
s cb4.chrX              11132443  5 + 21540570 A---------------------------------ACAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2494002 36 -  4500979 ACGGTTCAATTTGGATTTTGGAGTTTATC--GTCATAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    328628 12 -  1189296 --------------------GAGTCTATC------TGA
i caeSp111.Scaffold626  I 41 C 0
s caePb3.Scfld02_0       4059682 16 +  4147112 --------------------gaGTTCACC--GTCATGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   316236 517 -   357190 I

a score=80622.000000
s ce10.chrX              5803562 382 + 17718866 AAAACATCAATCAAACGTAG-TGTTTCCAAATTT-CAAGGTCTC-GAAACGAT-----CACCAGTTC-GTGTCTTTTGCCCTCG-----------------CATGTATCGGGTCACTCACAAGGACAC-AACTTGTTAATGTCGAAATGTCAAAATTGGGACAATCT-GCT-ACTAAAATCGTTTCCTTC-------T--TTAGCGATCAACCATAAAACCCCGCCTCCGTTTTGAAACAT-GAAAAAAAGTAT-------------AAAAAT-A-GA--ATACCACAACGACACTTGTTAAAATATTATT-------CCTCATATCTAGCTTCTGCTTGTATT------TTTTTGTCTGAT----------GTT---------GATGTAATGCCGTCACTTGGTCGGCGATTTAATATTATCAGAACATAGGAAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTA
s cb4.chrX              11132448 342 + 21540570 AGAACATCGAT-----CAAGATCCTATATAGTTT-CAAGGTCTC-AA------------------CC-GTGTC-------------------------------GTCtttttttACTAACAAGGACG-------------GT--GAATGTCACAATACGGACAATCT-CCA-GTTTTGATCGCCATTCTC-------TGCGAGGCGGTCTCTGttgagactccgc--ccacttttgaaaac-aagaaaaggtAGAAAAGGAGCTATATATAATCA-GA--GAAATAG-------------------TCACCAGAAGGCACCAGTTCTCTAGTTATTCTACTGTATTCAGTTTCTCATATAAT-----------AA---------AATGCCTTACCGATACTTGGTCGACAATTTAATAGTATCTGATTAA--TTGATGGATAGTATTAGTTGTGCGACCAGGAAATGGTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2494038 402 -  4500979 GAAACATCAAT--GTGATGGCTGTTTCAAGGTTT-CAAGGTCTC-AAAAC-------------GTTC-GTGTCTTcgctccccccccccccccccccccatcaTGTCTTAGGTCATTCACAAGGACAC-AACTTCTGACtgtcaaaaagtcaaaatggGGACAATCT-CCG-ATTCGAATCGACGTATTC-------TGCTAGGTGGTCGGCCATAAAACTCCGC--CCGCTTC--GAAAC-GAGAAAAGGTTG----GGAGCAGTATAAAAT-A-GA--ACGGTGGGTAGAC----------ATTTCATCAG-----ACTCACACTCGATGTGTTCTTTCTTCTGGATGTCTTTATTTGATTCTT-TCCCGCAA---------GATGTTGTACCGATACTTGGTCGACAATCTAATATTATCGGTTCTG--CCAGAAGATAGTATTAGTTGTGCGACCAGGAGACGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    328640 386 -  1189296 GAAACATCAATCAAAAGTGCCTGTTTCAAGGTTT-CAAGGTCTC-AAAACGAT-----CACCAGTTCTTTGCCTTTTGTCTGCC-------------------TGTCTTAGGTCACTCACAAGGACAC-AACTtgttaatttcaaaatgtcaaaatgGGGACAATCT-GCG-ATTCAAATCGACCATCTT-------TGCAAGGCGGTCAGAAATGAAACTCCGC--CCGTTTCTGAACGTGTGGATGACGACG----GCAGGTGTATAAAAC-A-GA--ACGGTAGATAGAC----------AAATCAC-----------CACAGTCGcctcatttttctgta------tttctaTCTGAATCAAATCCTGGAT---------AATGTAGTACCGGCCCCTGGTCGACAGCTTAATATTATCTAGAGTT--AAAAGTGATAGTATTAGTTGTGCGACCAGTAGACGGTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4059698 394 +  4147112 GGAACATAAATCAAAAGCACCTGTTTCAACGTTTCCAAGGTCTCAAAAACGAT-----CACCAGTTC-ATGTCCTTTGTCTACC------------------ATGTCTCAGGTCATTCACAAGGACAC-AACTTGTT-------AAATgtcagaaaagaaacaatttaaCG-ATTCAAATCGTTGTCTTC-------TGCTAGGCGGTCGGGCATGAAACTCCGC--CCGTTTTCTAACgt-tggaagaaaaaa----cgagcAGTATAAAAG-AGGA--ACGGTAGACTAAC--------AGAAATCACACA-----TCTTCCATTTCCTGCTTTTGTCTACC------ATTCTATTCGATC----TCTTGGATGAGATTGAAAATGTGGTACCGATACCTGGTCAACAGCATAATATTATCAAATATT--GAGAGTGATAGTATTAGTTGTGTGACCAGGAGACGGT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   316753 365 -   357190 aaaaaataaatcaaaag-----------gTGTTT-CAAGGTCTT-GAAACGATGTATGCTTTTTTCC-ACGTCTCCTCACCACC-----------------------TTAGGTCAACCACAAGGACACAAAACTCCGGCAgacaaaatgtcaaaatgGGGACAGTCT-ACACAATTGCATCGCGTTTGTCGTCCGGGCGTGAAACGAAACGCAACCAAACTCCGC--CTTGTTTTGTTAAG-----------------TAACCTGTATAAAAT-G-GATGATGTTGGAATGAT-----------AATAAAGAA-----------attctgtttattttttgctacAT---TTCCAATGTAAA-----------AC---------AATCAAGTACCGTCACTTGGTCGACGGCTCAATATTATCACACTTT-GTTAATTGTTAGTATTAGTTGTGCGACCAGGAGACGGTA
i caeJap4.Scaffold17990 I 517 I 1874

a score=-97075.000000
s ce10.chrX              5803944 391 + 17718866 -TTCGCATATTTCTTAAATATT---------CATTTTCATAA----------------TCGTACAAGG----TACGTTTCGAG---TAATGTCTGCAAGGTTCTTGCCCACAATGACAGAAAACAGTTTTATTTTGCTGAACGTCACATTCAAAAAAAACTTATATTTCTTGTTTATTTTTTTAAATGTTTTTTTTACTATTGCCAAAAATATTGAATC---GCTATTCAGTTTTAAATTACCGTACAAATTAATAATCTAGTTTCAATGATTTTTCTTTTTCTTTTTCTCTGAACATT----GTTTTAATATGGTTTGTC--AATA------------TTCCGGACTTTTTACTG--------CAAAAAGTCATAAATAATTTT------TTTTTCACAAAAGTAGAGTTT-TTTAATAATATTTTGCAAAACTTTC-------ACATCTGAATTATGGTTCTCAA
s cb4.chrX              11132790 131 + 21540570 ----------------------------------------------------------------TGAG------catttcaat---tt---------------------------------------------------------------------------------------------gaagaaattctcTTTTA---TTACTTAcatcttca------gattttcagattaacatt--------------------------------------------------------aatccaatttttcatgtAACT------Aata------------tt--ggttttgaaaatg----t----------------------------------------------------ttttttgaaaaatgaagaaggttTT-----------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2494440 211 -  4500979 tttaacatcaatttttattaag----------GTTGAGACAG--------------------GTTgag----tttatttcaga---tt-----------------------------agaAAA---------------------TACAGTAGAAGAAA----------------------CGAAGGAATTGATTCTAA--TTTACATACAACT---------AATGTGGCggttaaattt--------------------------------------------------------att----ttttcaatctgacT------AAAA------------TTaaggaattcaaattt----tttcagattagttGTAAAG-----C-----------CAAAA------------TTTCctgatgaatgaaaaaagttttcaa--------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    329026 281 -  1189296 -TGATCATGTTTCTTTCAGTGG----------TATGTTTTAA--------ACTACATCTTTTGTTAAA----cagttctcaaaatttcatt-------------------------cagaaga-----------------------------------------------------------gaaaaattcaaccaaa--ttttcagaatgttcaaACTATTGCTCTTTTGGATCACCTTTCTAGTGAGA-------------------AAATTGTCAT---------------GAAGT----TTTTGTCTCTTGCCTTATATAAAGCCAATTCAAAGCTCCAGGTTTTAtagata---------aaa-------aaagaaattc-----------catAAATGAAATATAT-TTAATTGCTGCAAGTATAAACTCTA---TTGCAGGTTCGAATTAAA--------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4060092 346 +  4147112 -TAAACATTGTACTTTCATTAGGGAGGGCCCAGAGGTAATAAGGAAAAACAttacagaaaatatgaaaccaGCAAGTCATAAA---TTATG-------------------------GAGAAAA---------------------CATGTTCAAGCATA----------------------TTTAAACAGGCTGTcataggttttcaaaaaattcatggCTGGAGTTTGTTGGTACACGTTGCAAATTGGATAGA--------TCGCAATGAATTgtttg---------------gaaat-gaattttcacgGTTG--------AAAA----------gttcatggttttttgaatacgGGTTTCCAAATACCTGTAATGAAGTCCCCAACTTTGTACAAAACTTCAACGTTTCTTAGTTAACTCGGCTAAAAGCTTCC---GTGAAAGC----AATAAATTTATCAA
i caePb3.Scfld02_0      C 0 I 49
e caeJap4.Scaffold17990   317118 1874 -   357190 I

a score=-6370.000000
s ce10.chrX              5804335 45 + 17718866 ACTTCTTTAGGCTAATTATTTATTTTAAAGAAACATGAATAATAT------
s cb4.chrX              11132921 26 + 21540570 ------------------------TCGAGTATAACTAAAAATCAGAAGGA-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2494651 28 -  4500979 -----------------------ataaaagaaaatttacACTTTCAGGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    329307 40 -  1189296 -------AATGCTAGTTTAATATATCATAAATACATTAATATCATAT----
i caeSp111.Scaffold626  C 0 I 1
e caePb3.Scfld02_0       4060438 49 +  4147112 I
e caeJap4.Scaffold17990   317118 1874 -   357190 I

a score=-17062.000000
s ce10.chrX              5804380 64 + 17718866 ---TTACATCAATGATTGTGTA-----------CTGCAGAAA---ATAATTGT-------------ATGGTATTGAAAAGTATA--ATGAAGAAAT
s cb4.chrX              11132947 34 + 21540570 ---AAA---------------------------TCAGAAGGC---ACGATTAA-----------------------------AATTATTGTTCAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2494679 50 -  4500979 TTGGAATTTTAGT-ATTGTACT-----------TCAAAAACT---ATGATGGA-----------------------------AA--AATGTTGTAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    329348 85 -  1189296 ---ATACTTCATT-ATCGTTTACTTGACGTCataaacaaaattcaaaatttatttgtaCTGCCTTATTGGt-----aatttaaa--ataataaagt
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       4060487 47 +  4147112 ---gtacttcgat-ataatttg-----------aaataaaat---aaaattgt-----------------------------aa--atATACATGT
i caePb3.Scfld02_0      I 49 C 0
e caeJap4.Scaffold17990   317118 1874 -   357190 I

a score=116723.000000
s ce10.chrX              5804444 165 + 17718866 TCAGCACACAACTCTGCGTAAATAAACACTCGGTACAGGTCTTGCCATTCTGCCACTGATCAGCTCCACGCTTGCATTTCCATTTCTCTGTTTTTCAAAATCAATCATTTGTCGCCAAAATCCAATATTTGGCGAGATGATCGGACGAACCTAAG-----AAATTTCAA-A
s cb4.chrX              11132981 161 + 21540570 TCAGCAAACAGCTCTTCTCAAATAGACACTTGGAACCGGACGTGCCATTCGACCGCTGATCAGTTCAACGGTTGCGTTTCCATTGCGTTGTTTCTCGAAATCAATCATTTGTCTCCAGAATCCAATGTTCGGGGAGATGATTGGACGAACCTGAA---------TTCAAA-
i cb4.chrX              C 0 I 1177
s caeRem4.Crem_Contig0   2494729 169 -  4500979 TTAGCAGACTGCTCGTCTCAAATAAACACTTGGAACTGGTCGGGCCATTCTTCCACTAATCAACTCCACAGTCGCATTTCCACTGCGCGATTTCTCGTAGTCAATCATTTGTCTCCAGAATCCGATATTTGGAGAAATAATTGGGCGAACCTaaaaaaaCTCATTGCAA--
i caeRem4.Crem_Contig0  C 0 I 18
s caeSp111.Scaffold626    329433 163 -  1189296 tCAGCAAACAGCTCTTCTCAAATAAACACTTGGAACTGGCCGTGCCATTCTTCCACTGATTAATTCTACAGTAGCATTACCACTACGttgtttctcaaaatcaatCATCTGACGCCAGAATCCAATATTGGGCGAAATGATTGGTCGAGCCTGTa------attttaca--
i caeSp111.Scaffold626  C 0 I 2
s caePb3.Scfld02_0       4060534 163 +  4147112 TTAGGCAACTGCTCTCCGTAAATAAACACTCGGGACTGGTCTTGCCATTCTCCCACTGATAAGTTCAACTGTCGCTTTTCCAGTAcgttctttttcaaagtcaatCATTTGACGCCAGAAACTGATGTTTGGAGAAATAATTGGTCGcaactgga------attttcaa--
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold17990   318992 161 -   357190 TCAGCACACTTCTCTTCTCAGATAAACGCTCGGAACAGGTTTCGCAGTCCGACCGCTGATCAGCTCCACACTGGTACTTCCATTCAACTGCTTTTCAAATTCAATCATTTGTCTCCAAAAACCTACATTTGGCGAGATGATCGGTCGCACCTACA------AATTAA----
i caeJap4.Scaffold17990 I 1874 C 0

a score=-6216.000000
s ce10.chrX              5804609 27 + 17718866 AACTTTCA-----AACTTTCTCCTAGACAAAC-------
s caeRem4.Crem_Contig0   2494916 14 -  4500979 atttttcaaaa--aac-----------------------
i caeRem4.Crem_Contig0  I 18 C 0
s caeSp111.Scaffold626    329598 28 -  1189296 --tttttaaaa--aattctgacaAAGATAGAC-------
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4060703 24 +  4147112 acttttcaaaatcgtttCT--------CAGAC-------
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold17990   319153 37 -   357190 AGTTAtgaaca--attttattttaaagcaTGTTTGAAAA
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11133142 1177 + 21540570 I

a score=162971.000000
s ce10.chrX              5804636 257 + 17718866 TTACCTGGTTCACTTGCAGGTATGCCTCTTCCAAGGACAGATTCTCGGTGACCATCAAATAGACAATTGTCAATGTTGCACTTCTACTGACTCCCGCCGCACAGTAGATAACCGTGTTGTGTCCCTGAAATTTTTTAAATATCAAATTTAAG----TTTACTAGATTTCTATCAAG---TACTTGTTGCTTTGCATCCTCGATATACTTGACCACTGGCTCAAAGTACTGAGTAATTTTTGCAAGTGTATTGTCATCGACTGGG
s cb4.chrX              11134319 206 + 21540570 TTACCTTATTAACATGAAGATACGCTTCTTCTAATGACAAGTTTTCGGTGACCATCAAATAGACAATTGTAAGCGTGGGACTTCTGCTAACACCTGCCGCACAGTAGATGACCGTGTTATGTC----------------------------------------------------------CTTTTTGCTTGGCATCTTCTATAAACTTCACAACCGGCTCGAAATACTGACCAATTTTAGCTAATGTGTTATCTTCAACCGGC
i cb4.chrX              I 1177 C 0
s caeRem4.Crem_Contig0   2494930 256 -  4500979 taactttgtTCACATCAAGATATGCCTCTTCCAAGGACAAATTCTCAGTGACCATCAAGTAGACTATGGTCAGCGTTGCACTTCTACTCACACCGGCCGCACAGTAGATAACCGTGTTGTGTCcctgaaatatttgaattc--agaaaggAAA---TAGAGAAGATAGAAATCTAA---AACCTGTTGCTTCGCATCCTCAACAAATTTGACGACTGGCTCGAAGTACTGTGTGATTTTGGCAAGTGTGTTGTCATCAACAGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    329626 255 -  1189296 TTGCTTTGTTCACATGAAGATAGGCCTCTTCCAAGGACAAATTTTCTGTGACCATTAAATAAACGATGGTCAATGTCGCACTTCTACTGACACCTGCCGCACAATAGATAACTGTATTGTGtccctgaaaaaatggaacga--aatttgaaa----ttttgaagattatGATCGGA---AACCTGTTGCTTCGCATCTTCAACAAATTTAATGACTGGCTCGAAATATGGTGTCATTTTAGCAAGGGTATTATCATCAACTGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4060727 259 +  4147112 TCACTTTGTTCACATGTAGGTATGCCTCTTCCAAGGACATATTCTCAGTGACCATTAAATAGACAATGGTCAATGATGCACTTCTACTGACGCCGGCCGCACAGTAGATGACTGTGTTGTggccctgaaaaaaaaaacaga--aatttgaaaaaactccaaaagaCAATTGCGAAA---TACCTGCTGCTTAGCATCCTCAACAAACTTGATAACTGTCTCGAAATGTGGCGTTATTTTAGCAAGTAAGCTGTCATCAacagga
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   319190 258 -   357190 TAACTCGGTTCACTTGATGATATGCATCTTCCAAAGACAACCTCTCCGTGACCATCAAATAGACAATTGTAAGTGTTGCACTTCTGCTAACACCTGCTGCACAGTAAATTACTGTATTTTGACCCTGAACAAATTTAAATG--atgtgaaaa----atagaaatatgCTTGTGAAAAGGTACCTGTTGCTTCCCCTCTTCCACGTATTTGATTACTGTATCGAAATACCCAGAAATCTTTGATAAGGCACTGTCGTCGACGGGg
i caeJap4.Scaffold17990 C 0 C 0

a score=3296.000000
s ce10.chrX              5804893 4 + 17718866 ACCT
s cb4.chrX              11134525 4 + 21540570 ACCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2495186 4 -  4500979 Acct
i caeRem4.Crem_Contig0  C 0 I 40
s caeSp111.Scaffold626    329881 4 -  1189296 ACCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4060986 4 +  4147112 atct
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319448 0 -   357190 C

a score=-162.000000
s ce10.chrX              5804897 4 + 17718866 GGAA-
s cb4.chrX              11134529 4 + 21540570 GGAA-
i cb4.chrX              C 0 I 19
s caeSp111.Scaffold626    329885 4 -  1189296 -GAAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4060990 4 +  4147112 -gaaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319448 0 -   357190 C
e caeRem4.Crem_Contig0   2495190 40 -  4500979 I

a score=338.000000
s ce10.chrX              5804901 11 + 17718866 TAATTAATTGA
s caeSp111.Scaffold626    329889 11 -  1189296 GAAACAATTAA
i caeSp111.Scaffold626  C 0 I 23
e caePb3.Scfld02_0       4060994  0 +  4147112 C
e caeJap4.Scaffold17990   319448  0 -   357190 C
e cb4.chrX              11134533 19 + 21540570 I
e caeRem4.Crem_Contig0   2495190 40 -  4500979 I

a score=-3948.000000
s ce10.chrX              5804912 213 + 17718866 TCGTGATTTCATTACGTTTTTTATATTGTTTGATGCGTTTTAGGGCTTTACAGCATTCATTCGAATAAAAATTGAAGGTGAATCGTGATTTTAAAAAGTGTCCTAAAATGGAATCAAAATATAAACTGAAGAAGCGGTGTTTTATGTGTATTTCTTCATTTACGATATTTGAATTTTTTTTTAAATTTAAGCTTAAAATACAGAATAAAAAGC
s caePb3.Scfld02_0       4060994  42 +  4147112 ------------------------------------------------------------------aagaattta---tgaattatgttctgaaa--------------------------------gaaga-------------------------------------------------------------------acag---aaaaagc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319448   0 -   357190 C
e cb4.chrX              11134533  19 + 21540570 I
e caeSp111.Scaffold626    329900  23 -  1189296 I
e caeRem4.Crem_Contig0   2495190  40 -  4500979 I

a score=111.000000
s ce10.chrX              5805125 16 + 17718866 ACATGCCAGAAACAAA
s cb4.chrX              11134552 16 + 21540570 ACGTTTCAGAAACTAA
i cb4.chrX              I 19 I 5
s caePb3.Scfld02_0       4061036  1 +  4147112 ---------------a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319448  0 -   357190 C
e caeSp111.Scaffold626    329900 23 -  1189296 I
e caeRem4.Crem_Contig0   2495190 40 -  4500979 I

a score=0.000000
s ce10.chrX              5805141 4 + 17718866 AACG
e caePb3.Scfld02_0       4061037 0 +  4147112 C
e caeJap4.Scaffold17990   319448 0 -   357190 C
e cb4.chrX              11134568 5 + 21540570 I
e caeSp111.Scaffold626    329900 23 -  1189296 I
e caeRem4.Crem_Contig0   2495190 40 -  4500979 I

a score=-310.000000
s ce10.chrX              5805145 1 + 17718866 T
s cb4.chrX              11134573 1 + 21540570 A
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2495230 1 -  4500979 A
i caeRem4.Crem_Contig0  I 40 C 0
s caeSp111.Scaffold626    329923 1 -  1189296 T
i caeSp111.Scaffold626  I 23 C 0
e caePb3.Scfld02_0       4061037 0 +  4147112 C
e caeJap4.Scaffold17990   319448 0 -   357190 C

a score=73594.000000
s ce10.chrX              5805146 88 + 17718866 ACCTCAATTCTATCCAGTCCTTTGATAGGCTTTGTTTTCAGGTTTGTGCAATCAACACCATGAGTTATGTTATATTGTTTTAACTGGA
s cb4.chrX              11134574 88 + 21540570 ACCTCCAGCCTTTCCAAGCCAGGAATTGGCTTTGTTTTCATATTTGTGCATTCTACGGCATGTGTGATGTTGTATTGTTTCAGCTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2495231 88 -  4500979 ACCTCAATTTTATCGAGTCCGGGAATCGGTTTTGTTTTGAGATTGGTGCAATCGACAGCGTGTGTGATGTTGTATTGTTTTAACTAAA
i caeRem4.Crem_Contig0  C 0 I 73
s caeSp111.Scaffold626    329924 88 -  1189296 ACCTCTATCTTTTCAAGTCCTGGAATTGGTTTAGTCTTCAAATTTGTACAATCTACAGCGTGAGTGATATTATTTTGTTTGAGCTGGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4061037 88 +  4147112 ACCTCAATTCTCTCAAGTCCAGAAATTGCTTTGGTTTTCAAGTTTGTGCAGTCGACGGCATGAGTGATGTTGTATTGTTTCAACTGAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   319448 88 -   357190 acttcaattttttccaggCCGGCGATTGGCTTTGTTTTCAAATTCGTGCAATCAACGGCTCTAGTGATATTGTATTGTTTTAACTGAA
i caeJap4.Scaffold17990 C 0 C 0

a score=910.000000
s ce10.chrX              5805234 1 + 17718866 A
s cb4.chrX              11134662 1 + 21540570 A
i cb4.chrX              C 0 I 23
s caeSp111.Scaffold626    330012 1 -  1189296 A
i caeSp111.Scaffold626  C 0 I 28
s caePb3.Scfld02_0       4061125 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   319536 1 -   357190 A
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2495319 73 -  4500979 I

a score=112.000000
s ce10.chrX              5805235 20 + 17718866 ATTAAACGACTATGTGATAA
s caeJap4.Scaffold17990   319537 20 -   357190 AGTTTAGTTTTTTGCGATaa
i caeJap4.Scaffold17990 C 0 I 17
e caePb3.Scfld02_0       4061126  0 +  4147112 C
e cb4.chrX              11134663 23 + 21540570 I
e caeSp111.Scaffold626    330013 28 -  1189296 I
e caeRem4.Crem_Contig0   2495319 73 -  4500979 I

a score=-4590.000000
s ce10.chrX              5805255 505 + 17718866  
s caePb3.Scfld02_0       4061126 318 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319557  17 -   357190 I
e cb4.chrX              11134663  23 + 21540570 I
e caeSp111.Scaffold626    330013  28 -  1189296 I
e caeRem4.Crem_Contig0   2495319  73 -  4500979 I

a score=-1403.000000
s ce10.chrX              5805760 13 + 17718866 TTTTCAATTC----CT-T
s cb4.chrX              11134686 12 + 21540570 ttttcaaaag----ct--
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   2495392 16 -  4500979 TTTACAATGGCATCCT--
i caeRem4.Crem_Contig0  I 73 C 0
s caePb3.Scfld02_0       4061444 10 +  4147112 ttttcaa-------ctc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   319557 17 -   357190 I
e caeSp111.Scaffold626    330013 28 -  1189296 I

a score=660.000000
s ce10.chrX              5805773  8 + 17718866 TAAA---AATT
s cb4.chrX              11134698  8 + 21540570 tgAA---ACAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2495408 11 -  4500979 TAAAAGCACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    330041  8 -  1189296 taaa---actT
i caeSp111.Scaffold626  I 28 C 0
e caePb3.Scfld02_0       4061454  0 +  4147112 C
e caeJap4.Scaffold17990   319557 17 -   357190 I

a score=208293.000000
s ce10.chrX              5805781 546 + 17718866  
s cb4.chrX              11134706 576 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2495419 548 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    330049 549 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4061454 548 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   319574 556 -   357190  
i caeJap4.Scaffold17990 I 17 I 3000

a score=7392.000000
s ce10.chrX              5806327 24 + 17718866 AATGTTC-AAGCAC--TCTGATCAAAT
s cb4.chrX              11135282 27 + 21540570 AAACCTCAaagcactttttgattaaAT
i cb4.chrX              C 0 I 10699
s caeRem4.Crem_Contig0   2495967 26 -  4500979 aatgctCAAAGCAC-TTTTGATCAAGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    330598 25 -  1189296 aatgcTCAAAGCAC-TATTCGGAAAG-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4062002 25 +  4147112 aatgctCAAAGCAC-TTTCGATCAAG-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I

a score=1092.000000
s ce10.chrX              5806351 2 + 17718866 TT
s caeRem4.Crem_Contig0   2495993 2 -  4500979 TT
i caeRem4.Crem_Contig0  C 0 I 861
s caeSp111.Scaffold626    330623 2 -  1189296 TT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4062027 2 +  4147112 TT
i caePb3.Scfld02_0      C 0 I 1199
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I

a score=191.000000
s ce10.chrX              5806353 2 + 17718866 TG
s caeSp111.Scaffold626    330625 2 -  1189296 TG
i caeSp111.Scaffold626  C 0 I 1615
e caePb3.Scfld02_0       4062029 1199 +  4147112 I
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeRem4.Crem_Contig0   2495995 861 -  4500979 I

a score=0.000000
s ce10.chrX              5806355 1297 + 17718866  
e caePb3.Scfld02_0       4062029 1199 +  4147112 I
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2495995  861 -  4500979 I

a score=353.000000
s ce10.chrX              5807652 16 + 17718866 AATCTTATTTAGAATG
s caeRem4.Crem_Contig0   2496856 16 -  4500979 aacatttttccaaacg
i caeRem4.Crem_Contig0  I 861 C 0
e caePb3.Scfld02_0       4062029 1199 +  4147112 I
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=9235.000000
s ce10.chrX              5807668 85 + 17718866 TACACTTAACACCATCTACTTTTCTATATTTGGGTTATATCAACTTTCGATAGTGTATAACCACAATAAGCAAAGCGAACAGTGA
s caeRem4.Crem_Contig0   2496872 84 -  4500979 TGCAATGATCACTACTTGCTATGTT-TAATTGGGTTATTTCAATTCTTGCATATGTATAACCACAATTAGCACAGCAAACAGGGA
i caeRem4.Crem_Contig0  C 0 I 976
s caePb3.Scfld02_0       4063228 84 +  4147112 TGCAACTGTCACCATCTGCTGAGCT-TGATTGGGTTATAACATCTTCGGTTAATGTATAACCCAATGAAGTATAGCAAAAAGTGA
i caePb3.Scfld02_0      I 1199 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=128.000000
s ce10.chrX              5807753 5 + 17718866 ATAGT
s caePb3.Scfld02_0       4063312 5 +  4147112 GTTGT
i caePb3.Scfld02_0      C 0 I 1491
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2496956 976 -  4500979 I

a score=0.000000
s ce10.chrX              5807758 1327 + 17718866  
e caePb3.Scfld02_0       4063317 1491 +  4147112 I
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2496956  976 -  4500979 I

a score=112.000000
s ce10.chrX              5809085 7 + 17718866 CATCATC-
s caeRem4.Crem_Contig0   2497932 8 -  4500979 CACCATCA
i caeRem4.Crem_Contig0  I 976 C 0
e caePb3.Scfld02_0       4063317 1491 +  4147112 I
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=-469.000000
s ce10.chrX              5809092 76 + 17718866 CAGTACTCTCTTTTGATTGCATAATCCATAAGAGCTGTTTTAATCCCTG-ATAACAGCTGAATGGCAAGCAAAATAG--
s caeRem4.Crem_Contig0   2497940 68 -  4500979 CAGCAATTCCCACAGATTGCTTATGCTCT---AGCTCTTCTAATTCGCGGATTTCAGAATAAA------CACGAAAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4064808 77 +  4147112 CAGTACTCTCCTTTGATTAAATGAGCTCTGC-ACATCTTTTGATCCTagtattttggaagaaaag-acTCGCGATCTTC
i caePb3.Scfld02_0      I 1491 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e cb4.chrX              11135309 10699 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=14388.000000
s ce10.chrX              5809168 66 + 17718866 AGATGAGAAGCCATAATCTGACGAGATATCCTTTTTGCCATATAAATATTCACTTTGAAAAAGGAT---
s cb4.chrX              11146008 69 + 21540570 AGATAAGAAGCCATAATCTGACGAGATATCTATTTTCGAGTATAAATAGCCAGTATCAAGCAAGAAAAC
i cb4.chrX              I 10699 C 0
s caeRem4.Crem_Contig0   2498008 69 -  4500979 AGATAAGGAGCCTTAATCTGACAAGATATATATTTTCCCATATAAATACTTTTCACTAGGAAGAAGAAT
i caeRem4.Crem_Contig0  C 0 I 37
s caePb3.Scfld02_0       4064885 67 +  4147112 ATATAAGAAGCCATAATCGGACGGAATATTCTTTTCGGAGTATAAATACCACATATTGAAGGAGAGG--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=-2506.000000
s ce10.chrX              5809234 44 + 17718866 ATATCAGTAGTCAGCGAATTGCTGACGGCAGCGCTCGTCTTCTA---
s cb4.chrX              11146077 29 + 21540570 --ACATTCACTC--------TCAGTCAGTTGAGTGT-----ATA---
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4064952 42 +  4147112 AAATGCTCATTCGGCATTTTTCTGGCAGTCTTGCTC-----CTACTA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2498077 37 -  4500979 I

a score=208.000000
s ce10.chrX              5809278 12 + 17718866 ATTTCTTCTACA-
s cb4.chrX              11146106 13 + 21540570 TTCTCTGCTGGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498114 12 -  4500979 cttttttctaga-
i caeRem4.Crem_Contig0  I 37 C 0
s caePb3.Scfld02_0       4064994  9 +  4147112 ---TTTTCTTGT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   320130 3000 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=22886.000000
s ce10.chrX              5809290 99 + 17718866 TTTATAGTCTACTTTGTAGGTTTGAACC-------TTCGATTACCTTATCCGTTGTAGCCAAAGTTCAACGAA--GCGGCAACTTTGGCACTCCGCAGATAAGGCAAT
s cb4.chrX              11146119 93 + 21540570 ATTCtaagatttttgg-------gaatt-------ctcgATCACCGTATCACGTGTGGCCAAAGTCAAATCCA-TTATTGAACATTGGCACTCCGCTGATTTGGTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498126 92 -  4500979 attattCGTTACGTTC-------GAATT-------CTCAATCACCTTGTCAGGTTTAGCCAAAGTCAAACATA--AACTGAACTTTGGCACTCCGCTGATTTGGTGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4065003 88 +  4147112 ATTC------ATACTA-------CAATT-------CTCAGTTACCTTATCACGTGTTGCTAAAGTTCAATACATTTAGTGAACTTTGGCACAACGCTGATTAGGTGAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   323130 99 -   357190 TTTATTATTCCTTTTT-------AAAGTTGACGCGCCCAATTACCTGATCCGCTGTCGCtaaagtttttcaaa--actgAAACTTTGGCACTTCGCAGATACGGTAAT
i caeJap4.Scaffold17990 I 3000 I 70
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=-667.000000
s ce10.chrX              5809389 10 + 17718866 CGATTGTTT-T
s cb4.chrX              11146212  9 + 21540570 CGACTTTTC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498218  9 -  4500979 AGAGTTTTT--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4065091 10 +  4147112 TGATTATTTT-
i caePb3.Scfld02_0      C 0 I 3381
e caeJap4.Scaffold17990   323229 70 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=-344.000000
s ce10.chrX              5809399  5 + 17718866 TGACA-----
s cb4.chrX              11146221 10 + 21540570 TGGAATAACA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498227  5 -  4500979 TGGCA-----
i caeRem4.Crem_Contig0  C 0 I 140
e caePb3.Scfld02_0       4065101 3381 +  4147112 I
e caeJap4.Scaffold17990   323229 70 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I

a score=362.000000
s ce10.chrX              5809404 8 + 17718866 CTTCAATA
s cb4.chrX              11146231 8 + 21540570 TTTTAGTA
i cb4.chrX              C 0 I 570
e caePb3.Scfld02_0       4065101 3381 +  4147112 I
e caeJap4.Scaffold17990   323229 70 -   357190 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2498232 140 -  4500979 I

a score=0.000000
s ce10.chrX              5809412 613 + 17718866  
e caePb3.Scfld02_0       4065101 3381 +  4147112 I
e caeJap4.Scaffold17990   323229  70 -   357190 I
e cb4.chrX              11146239 570 + 21540570 I
e caeSp111.Scaffold626    330627 1615 -  1189296 I
e caeRem4.Crem_Contig0   2498232 140 -  4500979 I

a score=390.000000
s ce10.chrX              5810025 30 + 17718866 TTACTCCTTAGTAGTATGTTCCAAACGATT
s caeSp111.Scaffold626    332242 26 -  1189296 ttatttctttgtcttattttcaaaa----g
i caeSp111.Scaffold626  I 1615 C 0
e caePb3.Scfld02_0       4065101 3381 +  4147112 I
e caeJap4.Scaffold17990   323229 70 -   357190 I
e cb4.chrX              11146239 570 + 21540570 I
e caeRem4.Crem_Contig0   2498232 140 -  4500979 I

a score=37.000000
s ce10.chrX              5810055 20 + 17718866 TTATTTAAAATTATGCTTCT
s caeSp111.Scaffold626    332268 18 -  1189296 -tcatcaaaattctgaatc-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4068482 19 +  4147112 -tttttgtaattcatAATCC
i caePb3.Scfld02_0      I 3381 C 0
e caeJap4.Scaffold17990   323229 70 -   357190 I
e cb4.chrX              11146239 570 + 21540570 I
e caeRem4.Crem_Contig0   2498232 140 -  4500979 I

a score=210.000000
s ce10.chrX              5810075 3 + 17718866 GAC
s cb4.chrX              11146809 3 + 21540570 GGC
i cb4.chrX              I 570 C 0
s caePb3.Scfld02_0       4068501 3 +  4147112 TGC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   323229 70 -   357190 I
e caeSp111.Scaffold626    332286 0 -  1189296 C
e caeRem4.Crem_Contig0   2498232 140 -  4500979 I

a score=15706.000000
s ce10.chrX              5810078 33 + 17718866 TTTTCGGCCGTTATGGTCAACTGATTTTGGATT
s cb4.chrX              11146812 33 + 21540570 TTTTCCACCGTTTCAGTTGACTTGTTCCGGATA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498372 33 -  4500979 TTTCTGCCCGTTACAGTTGACTTATTTCGGATT
i caeRem4.Crem_Contig0  I 140 C 0
s caeSp111.Scaffold626    332286 28 -  1189296 -----gtCCGTTATAGTCCACTTGTTCCGGATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4068504 33 +  4147112 TTTTTCTCTGTCATAGTCCACTTGTTCCGGATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   323229 70 -   357190 I

a score=84323.000000
s ce10.chrX              5810111 199 + 17718866 AACGATCCCCT--GTCCCGTTTCATAAAAAC--TAGGTCT----TCTCAAAAAGAACCA-CAAAATC--AAAAAGTGAATG-------------GCATCGAG--------TGGAGAAGGGAAAGATAATCCATTAGTTTCAAAACCAATTTTAG--AATTAAAAAACCTGCGCGCAGATGTT----G-----AGATGAGGCAGCTGC--------------TCCCA-GCCAAGTCCTGGCACCGCA----GCTTTCAC----TTG
s cb4.chrX              11146845 223 + 21540570 AGCTCCCT-CTCGTTCTTCCTTAATATAAGCAGATCTCTC----TTCTAAAACGAGGAA-CCGAAACGGAATAAGTGAATG-------------GCATCGGGGATAGGGTTTGA----ATGAAGATAATCCATTAGTTTC-AAAccaattttgg--aattaaaaaaccTGCGCGCAGATGTTCGTCC-----GGACACGGCAGCTGC-----------TGCTCCTAGCGCTGATCCTGGCACGGCGACCCGGTTTTCACTTGTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498405 201 -  4500979 AGCTcc---ctcatttttatttcatataAGCAACGAGTCT----GTTCAGAAGGAGGAA-TCAAGCC--AAAAAGTGAATG-------------GCATCGGA---------TGA----ATGTAGATAATCCATTagtttcaaaaccaattttgg--AATTAAAAAACCTGCGCGCAGATGTT----G-----AGATGATGCAGCTGC-----------TGCTCCC--TCCAGGTCCTGGCACGACGGCCTGCTTTCCC----TTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    332314 211 -  1189296 AGCGACCccctttcttttatttcataaaaac--caggtct----tttcaaa--gaagaatccaaatc--aaaaagtgaatg-------------gCATTGG---------TTGA----GTGAGGATAATCCATTAGTTTC-AAACCAATTTTGG--AATTAAAAAACCTGCGGGCAGATGTT----T-----GGATG-GGCAGCTGCACCGGGGGTTCGGCTCCTC-GATGGGCCCTGGCACCGGAGTCGGCTTTCAC----TTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4068537 202 +  4147112 AACGTCCC-----TTTTCATTACATGAAA----CCACCCT----TTTCAAA--GAGGaa-ccaaatc--aaaaagtgaatg-------------gCATTGGT--------TTGA----GTGAGGATAATCCATtagtttcaaaaccaattttgg--aATTAAAAAACCTGCGCGCAGATGTT----GTCCAAAGAGG-GGCAGCTGC--------TGCTGCTCCCA-GCTAGACCCTGGCACCGCGGTCGGCTTTCAC----TTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   323299 203 -   357190 AAAGATCCCCAGTTGCGCACCGGATGAAAAC--CATCTTTTCTATTTCAAA---------TAGGATC--AGGAAGTGAACGCGAATTTCCATCCGTTTTAGG--------TTTA----GGACGGATGATCCATTAGTTTC-AAACCATTTTCGGGAAATTAAAAAACCTGCGCGCAGATGTT----G-----CAGGGGAGCAGCTGC--------------TTCTA-TCC---TCCTGGCACCAA-----GCTCACTC----CTG
i caeJap4.Scaffold17990 I 70 I 575

a score=159126.000000
s ce10.chrX              5810310 433 + 17718866  
s cb4.chrX              11147068 483 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2498606 452 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    332525 437 -  1189296  
i caeSp111.Scaffold626  C 0 I 24
s caePb3.Scfld02_0       4068739 444 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   323502 575 -   357190 I

a score=-2832.000000
s ce10.chrX              5810743 32 + 17718866 CATCATT------------TTACGATGATACGGTAAAAAGGAGA
s cb4.chrX              11147551 24 + 21540570 TATCAAT------------TCTCATTA-----AGAAGAAGA---
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2499058 29 -  4500979 TATCACC------------TCATATTATTACTTGATGAGGA---
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4069183 38 +  4147112 TATCATTACCCGCGTACTGTTATACTTTTCTCAGATGA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   323502 575 -   357190 I
e caeSp111.Scaffold626    332962 24 -  1189296 I

a score=22511.000000
s ce10.chrX              5810775 156 + 17718866 ---TATTGGTAA-----ATAATGTTGCCATTT------CTTCTCACATCAATTTA--CTTGGCGGGTGTCC--AATTTTGAAAGCGGCAGATAATTGACAGTTCAAAAGAAAAGAAAGAGAGATGAATTTT-------------ACTGTCACCAG----------AGTCCTTGAAAACATGAACTGTGAAAAAAACC--------
s cb4.chrX              11147575 150 + 21540570 CATGGTAAAAAG-----ATACAATTGCATT--------CTTCTCACATTAATTTCCTCTTGGCGGGTGTCC--GATTTTAAAAGTGGCGAGTAACTGACAGGTCAA---------AAGAAAAGTGCCCTTTTTGAGAAATCGACGACGACTCTGG----------CGACCTTGAGAATATAAac---------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2499087 133 -  4500979 AACGGT----AG-----ATAGTGTTGCATT--------CCTCTCACATCAATTT-TTCTTGGCGGGTGTCC--GATTTTGAAAGTGGCAAGTAATTGACAGGtcaaagg--aaagaagaaaaatgtgccCTTTTAGAAGTCGGCAACGGAATTGG--------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    332986 110 -  1189296 ---tcttgaaaa-----atactgTTGCATTTGAT----TCTCTCACATCAATTTCTATTCGGAGGATGcct--aaattcaaaactgCCAAG-ATTTGACAggtcaaaagaaaaaaaagaaaaatg--------------------------------------------------------------------------------
i caeSp111.Scaffold626  I 24 C 0
s caePb3.Scfld02_0       4069221 198 +  4147112 ---TGtaagaaaagaagataatgTTGCATTTTCTTTCCTCTCACACATCAATTTC--ATCGGCGAGtgtccaaaaattcaaaaatggcaagTAATTGACAGGtcaaaag-gaaagaagaaaaatgtgccctttttgaaaccga-aactGCATTAAATTAATCTGAAGACCTTGAGAAGatgaactgtttcaaattaagaaaaacc
i caePb3.Scfld02_0      C 0 I 484
e caeJap4.Scaffold17990   323502 575 -   357190 I

a score=-18364.000000
s ce10.chrX              5810931 126 + 17718866 A-----TTTCTTAGATTAAAACACAGTTGAAAAATGCCCTTTTAGAAGTTCAAAACTACCAAAAAAGATGTTTGAACCCAAATTGATACAGTTCAGATATATTGAAAGACACTGTAGGCTATACAGAAACG
s cb4.chrX              11147725 106 + 21540570 ------tgtttcaaattaaaa--acgatgaaaacccctcgttt-----tt----gtttcaatgaaaaatg-gtgaaaaaagacggttgca----aaaaagacgaaaaaaaattctaggttA---ATGATTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2499220   7 -  4500979 ----------------------------------------------------------------------------------------------------------------------------GTGACTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    333096  36 -  1189296 -tgccctttttgaaatcgaaacgGCGTTGG----------------------------------------------------------------------------------------------ACGACTT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4069419 484 +  4147112 I
e caeJap4.Scaffold17990   323502 575 -   357190 I

a score=-191197.000000
s ce10.chrX              5811057 793 + 17718866  
s cb4.chrX              11147831 869 + 21540570  
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2499227 544 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    333132 531 -  1189296  
i caeSp111.Scaffold626  C 0 I 5
s caeJap4.Scaffold17990   324077 739 -   357190  
i caeJap4.Scaffold17990 I 575 C 0
e caePb3.Scfld02_0       4069419 484 +  4147112 I

a score=562961.000000
s ce10.chrX              5811850 692 + 17718866  
s cb4.chrX              11148703 742 + 21540570  
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2499775 709 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    333668 713 -  1189296  
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       4069903 708 +  4147112  
i caePb3.Scfld02_0      I 484 C 0
s caeJap4.Scaffold17990   324816 699 -   357190  
i caeJap4.Scaffold17990 C 0 I 1998

a score=27440.000000
s ce10.chrX              5812542 55 + 17718866 ATCAACTCT--TGAGATGAT-TAAACGG---TTCTTTGATCAAGATTACAAA-------GCAACGAAT
s cb4.chrX              11149445 62 + 21540570 ATCAACTCT--TGAGATGAA-TAAACGG---TTCTTTGATCAAGATTACACACATTTTTACTTTGAAC
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2500484 55 -  4500979 ATCAACTTT--CGAGATGAA-TAAACGG---TTCTTTGATCAAGATTACAAA-------GCAATAAAT
i caeRem4.Crem_Contig0  C 0 I 808
s caeSp111.Scaffold626    334381 56 -  1189296 ATCAAATTC--GAAGATGAATTAAACGC---TTCTTTGATCAAGATTACAAT-------GTAATAAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4070611 62 +  4147112 ATCAACTTTCGAGAGATGAATTGAACGACGGTTCTTTGATCAAGATTACAAC------GGCGATAAAT
i caePb3.Scfld02_0      C 0 I 1173
e caeJap4.Scaffold17990   325515 1998 -   357190 I

a score=-6060.000000
s ce10.chrX              5812597 164 + 17718866 CGAAATCTACGGATATCTTCA---------TCTTCTGAAGTA---------------------AAATG-TACCAAGTTTCAGGCTCCAAACTAGCTTTGCTCCGCACAAA----------TTGATAAATATTAAGAAAG------------AAAACATGTTTCCCTGAAAAATACCTAGTAAAGGCACAAAGTTATTCAAA----------------------TATTTT------------TTCCAGACAA
s cb4.chrX              11149511 214 + 21540570 ATGAAACTTCAGATATCCACTgatcaaaacttttcagataCATTTCAGCAAGATTACAGGGaaaaatg--ac--agtctgaaa--------------aatatctcaaaaa----------ctga-----ttttaaaaagttgctctttctaaaaaaatgctagcaaaaaaaacaac----aaaaaaacaaaaaaattcaaaacatcaaaaatgataattattgtttttcatataccttttttcccagaaaa
i cb4.chrX              I 4 I 91
s caeSp111.Scaffold626    334437 170 -  1189296 -CAAACATCCAGAAAACAGCATAGCAA---CTTTCAGATATA-------------------AGAGATGGTAC--AATCAGATGTT---------TTTTGTACCTCAATAAGATTCttgatttga-----atttagaa-----------cccaaaaaacatttccagaagaa---------aaaaggaaaagaaaacttggC----------------------TTTTTTGTTGGTCTACTGTTTCAGATGC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4070673 1173 +  4147112 I
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e caeRem4.Crem_Contig0   2500539 808 -  4500979 I

a score=-453.000000
s ce10.chrX              5812761 72 + 17718866 ----TAACAAAATGTGACA---ACAAATGAGCAACACGTT------------AATCAGCAGGTTGAT----GCACCTGAGCTTGTGACCTGTTTA
s caeSp111.Scaffold626    334607 92 -  1189296 ATCTTCAGAGAATACGACATTAACAAACAAG--ACCTATTTACGTactgaaaaatca-caaattaTTCCGGGcagaaaaacatattttctgttCG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4070673 1173 +  4147112 I
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e cb4.chrX              11149725 91 + 21540570 I
e caeRem4.Crem_Contig0   2500539 808 -  4500979 I

a score=-17456.000000
s ce10.chrX              5812833 271 + 17718866 TCCAAATATTTTTAATACATA---TTCAA---AGATAGAATTTTCA------TATAAGTTTCATTT---AG---------------------TTATATTTTATTTTTTTCGAAAGTTTGAAGATTACAAAAT-TTTAACAAAACAATTCAGCTTGAACTGTGAGAATTCATATTT--------------ATTA-----------------AAAGTCAGTTTTCAATTAAAAAAAAAGAATA----------------------------------AACATGTTATTTTGAGATGGGTTT------------------TTTTGTCTTCCATAATATTAGAGATAA-----GAAAAA-----------------------A---------------CCATTCGTTCTT----------------TCCAAATAGCT-----TGA-AATAATGAAATAAT--
s cb4.chrX              11149816 408 + 21540570 TTCAGACATTTTCTGCATGCTTCATTCAAACTAAAGATCATCGTCAGAAGGACATAAG-TGTAAAT---AAAAACAAGTGGAGCAAATActgttttgtctttttttt-------ttctgaaatttaggtaatatttcaaaattgagtgTAGCTTTA----------TTTACATTC--TGATTTGTTTTCAATGTatat------------aaaaatggaaatctaTTAGA---ACTGAACG-TGACTTTCCAGAAATAaggttttttctgt----------ttttttccagaaacttttatTGCGAATAGGTCGTCGTGTCGTTTTTATTGCTCATaggtatattttttgaaaacggcAGTTTGTGACATGTCAGCGCAACtgtctttttcatttcagacgCTTTTTACCTGAAGAAACAtcttaaaattattttaagtga-atttttgaaaatagat
i cb4.chrX              I 91 C 0
s caeSp111.Scaffold626    334699 375 -  1189296 ATCTGACTTTTTCCTtatatgtt-ttttatttacatgtcattttcagaacctttggagttgcacatttgaaaaac-----------------ttttgtttttttgctt---acattttggaatttatgatgt-tttttgaattgacgTTGgtaataaaatgaaaacctTCTATTCAACGCTTTTCGATAATTGTGTATGTGCCTCTTTTCAGACATTGAGTTCAAATTGATAGATAGAATGACAAAACTCCTGATAAGTTGGTGTTTATGCACAAAACATGTCtttctcagaaattttt------------------tttcatttcaatt-----tggaagaaagtgttgaaaat--caaacttttaCCCGTAGTCGAA------------GTTCAATACGttttt----------------ttAACAGGCTT---AGTGATAAGACTGAAAA-----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4070673 1173 +  4147112 I
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e caeRem4.Crem_Contig0   2500539 808 -  4500979 I

a score=986.000000
s ce10.chrX              5813104 4 + 17718866 ACGA
s cb4.chrX              11150224 4 + 21540570 aaGA
i cb4.chrX              C 0 I 21
s caeSp111.Scaffold626    335074 4 -  1189296 ACGA
i caeSp111.Scaffold626  C 0 I 13
s caePb3.Scfld02_0       4071846 4 +  4147112 ATAA
i caePb3.Scfld02_0      I 1173 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e caeRem4.Crem_Contig0   2500539 808 -  4500979 I

a score=55854.000000
s ce10.chrX              5813108 328 + 17718866 TTTAATTACATTGCACTTTTCCGGATTTTC----AGACTTTATCATTACC--CATCACGAGTGC--CGA---CTCAAGT--AAGTATTGCGAAC---GAGAAAAAAACTGCGTCCTGAAAAAAACTC--AC--------TAT-----CCGAGACCGCTCTCCCAATT------------TGACTGGCG-----CCCAACCAATTTGAA-TTTTTTT-GCGATAAGAGC--GTGAG--TTTTCAACTCAATGTTGCGATTTTTC--TTATCAATAGAAGTCATTTTTTTTGATA-TGGGCGTCAGAGAGCAGG---ACGAGGGCTCGAGGAGAGCAGCACGAGAGGAG---TACCAAAGTAGGAAGAGAAACAGAGACA-------TTTT-TTTCAGATT
s cb4.chrX              11150249 326 + 21540570 GTTAATTACTTTGCacttttccggatttttaaaCAGTTTTTCACGCTAT---CATCACgagt----cga---aaaaaattagactATCGAGAAC---GAAAAAA---CTCTGTCCTCAAAAAATTCC--TC--------TGG-----CCACTCACTCTATCATCCTA------------TTACTAGCGCCTAACCTagtcaatttgaattttttttcgtgataacagaaataaaaaaattcaaatttaatgtTGCG--TTTTTTCTTATCACCAGAAGTCATTTTT-----TG-TCGGCGTCAGAGAGCACA-----------AGGGCGCAGTGAAG--AAATATCATTGAATTTGGAGAGGAGA-AAAGGAAACTAAAA-----TTGGTTTTAAA---
i cb4.chrX              I 21 C 0
s caeRem4.Crem_Contig0   2501347 346 -  4500979 TTTAATTAC-TTGCACTTTTCCggattttt---cagacttcatCACTATCACCATCACGAGC----CGGCACGACAAATTCAAACAGCGAAA-----GAAAAAC---CCctgtaatgaaaaaattttgatt--------tgaaatttcctcTCTCActatttctctgcgtcttct----tTACTGCTGTCTAACCTAaccaatttgaa-tttttttagtgaTAAC-----TGTAAAAATTTAACTTCAATGTTGCG--TTTTG--TTATCATCAgaagtcatttttttcagta-tcgGCGTCAGAGAGCACaaaaaagagagcaggacgaggttagg--gaggagga---aataagaagaaaagaggaaggagagaaaaa-----ttag-tttaaa---
i caeRem4.Crem_Contig0  I 808 C 0
s caeSp111.Scaffold626    335091 351 -  1189296 tttaatTACATTGCACTTTTCCGGATTTCC----ACGCTTTATCATCAACAATATCACGAG-----TGG---AGTAGGTTAAACCATTGtgaactgagaaaaaataaccTTGTACTGAACAAAATTT--TCGTCCGAAACTCTCTTTTCA---ACACTATCTCCGT-CGCCCCCTG---TGACTGTCAC----TCTAaccaatttgaa-ttttttt-gtgataactgc--ttaaaaatttctttttcaatgttgCGA-TTTTC--TTATCACCAGAagtcattttttta--ta-tCGGCGTCAGAGAGCACG--ACAGAGAGCAGGAGGGGAGCAAG---AGGAGCA---AATCGGAAGAGGAAGACAACGCaggaaaaaa----tcag-tttgaaATT
i caeSp111.Scaffold626  I 13 I 22
s caePb3.Scfld02_0       4071850 333 +  4147112 TTTAATTACTATGCACTTTTCCGGATTTTT---GATACTCTATCAT---CAATATCACGAGTTGAATGg---agtaaattgaaaaactccgAAC---GAAAAAACtgtctttt--cgaaaaaaagtt--tc--------cacaCTCCCCAAACACGCTATCTTCGTCCGTCTCTTGCTCTTACTGTCG-----Tctaacaaatttgaa-ttttttt--tgataactgt--ttgaattttttaacttCAATGTTGCG--TTTTG--TTATCATCagaagtcattttttct--tacTCGGCGTCAGAGAGCAC--------------GAGAGGAGCAA-------CTCG---AATcggaaaaggaagaggaggagagaaaaaagaattggg-tTTGAAAT-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I

a score=57.000000
s ce10.chrX              5813436 30 + 17718866 TTTTAATTGAACCGTCTTGGTGTTTTTTGT-
s cb4.chrX              11150575 31 + 21540570 CTATCAGTGAACtgtttttccatttcatttc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2501693 28 -  4500979 tTTGAAGTGAACCGTTTTACGAT---GTTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4072183 20 +  4147112 --TATCGTAAACCGTTTTACGA---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e caeSp111.Scaffold626    335442 22 -  1189296 I

a score=-13770.000000
s ce10.chrX              5813466 170 + 17718866 ATGGGTTTCCTGTCAACCTCATCGGCTTATGTACATATGTGACGGATATATTCTATTC--A--CTGATTTATGATATTGCTATTTAGATAG---------TCTAGATC----TCA--------------------CATTTGAAACCTTAAA--GGTTTTTTCATCAAGAAACTTTT-------------CAAACTG-----------------------CCGCTAAAA----------------------------ATTAATCTAAAGTTTTT
s cb4.chrX              11150606 213 + 21540570 cTAGGTCACCCCCTAA----------GTTTGGCCTAAAAAGGCGGATTAA--CTGTTC--AGTGTGATTTATGGCTAGCTTCTCTGGATATATC------TCTGATTGCT--TCGGAAACAATTTCATCTAGGTTTATGTGTTTTCCTGATAGCTTTTGTCCT--AAtagcttttt-------------ttcattt-----------------------tttttcccaatttcctcCACTGGCACTAGTTGCCACGgttaatcaaaaattttc
i cb4.chrX              C 0 I 110
s caeRem4.Crem_Contig0   2501721 202 -  4500979 GTGGTTTACCCGCTAACACAATCG--GTTCGATTAGACTAGGCGGATATA--CTGTTC--A--GTGATTTATGATAAGCTTCTCTATGTCTATTA-----TCCTATCCTTAATCGCAACAAACGACATCTaggtttctatttttttctaat--cgtaaattct-------cttttt-------------tcaatct-----------------------ttttgaCCA--------CCCAGAGACTGTTCGC-----GTATTGAACAGATTAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    335464 158 -  1189296 ATGGGTTAACCATTC--------------TGATTAGACTAGGCGGATTTA--CTATTC--A--GTGATTTATGGCAAGTTTCTCTAGATC----------TCT---------TCG--------------------GACGCTGATCGTTAAg--atctttttcc-------cttttc-------------caaacat-----------------------ctttcagta-------tattttactttgttttt----tttaattctgacttttt
i caeSp111.Scaffold626  I 22 C 0
s caePb3.Scfld02_0       4072203 209 +  4147112 TCGGGTTACCCATTTT----------GTGTGATGAGACTAGGCGGATATA--CTGTTcaga--gtgatttatgataagcTTCTCTACATCTCTCAGTTAGTCT---------TCG--------------------TTCAGTCATTGttaag--tttttatttc-------attttttgcttcttgtGAACATACATGTAAGattgtcagttgaaaatcaTTGTCATTA--------ACTAGACCCCATTATC----ACCCATTTTCACATCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I

a score=-19432.000000
s ce10.chrX              5813636  83 + 17718866 ----------------------------------CTTT----------------AAAAAAAA-ATGT--TTCAA------CTTCTCCAAT------TTGATACTAACCTAGGATATATCAAATATCAAAG------AATTTTGCAACACTTTAT
s caeRem4.Crem_Contig0   2501923  93 -  4500979 ---------------------------------TTTTC----------------GGAGAACACACTG--TTAGTCACAACTTTCTGATAGGATACTGTAACTCTGACCCTCCG------ATGCTATCTGCTCCCTGAATTTCGGAGTTTC----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    335622 100 -  1189296 tttcat---------caaaaaggTGAACCTGATTTGTT----------------AGA------ATTGTATTCGT------TCCCTTTGAT---------ATTCTGACTTtataga----aaacaattgagTC----AGTTCCGTGTCTTCTCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4072412 121 +  4147112 CTTAATATCCCAATCCAAAGAAA-------GATTTTTTCCCTTGGCCCCTCCCCAGA------ATTT--TTCAT-ACAACTTCTTTCTAG---------AGTCCGACTACTCAAAT-TGACACATTTCA-------AGTTTGTtatcttttcaa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e cb4.chrX              11150819 110 + 21540570 I

a score=16325.000000
s ce10.chrX              5813719 239 + 17718866 GCTCTACTTTACAG------CAATTTT----TTA-----TT---CCAGAAAA------TATAAAA--------CACTTAAAATTGGCTCGACAAGAAAACGA-ACTGATA----AGGGCCACGAC--AACG-CAAAAGTTCAGCTTTTTATTTCATCACAGTTACTGTCCGAAA-----------AAATGTTGCCACTT--------TTACTGCT-CTTT--TTTTCTGATTCGATTATACATATTCCTTGATGTCGCAAAAGTTTCCTATGTT-CTTAG--AGATTATTTTCTGTTTTTCAAT
s cb4.chrX              11150929 246 + 21540570 GCTctctttttc--------cgtttttgtcgtcggaatttt---ccagaaaaggatagtaaaaga--------caagaaaaattggctcgacaaaaaatgaa-actgata----agaggcaaaaaagagcgccaaaaGTTCAGC-TATTATTTCATC------ACTGTccgaaaaaaacacttttgaatatttctggTTGGTTTGAGTTTTCATG-ATTT--ACTTCTGAT----------------GAAGCTG-------actattcgaaatt-tctggattactgtatttcggtttttttct
i cb4.chrX              I 110 I 25
s caeRem4.Crem_Contig0   2502016 217 -  4500979 CCTCGATCTTAC--------TGGTTTTTC--TCCGACTTTT---CGAGAGAAAGTGAGACGAAAG--------CATGTAAAATTGGCTCG--AAAAGGTGGA-ACTGATA----AGGGCCACGAC--AGCGCCAAAAGTTCAGC-TATTATTTCATCACTGTTACTGTCCGAAA------------AATGTTGCCGttt--------tcctccct-ctcg--ttttttgat---------------aaaaaatg-------agtagtttcattt-tttga----------ctcaatttttATGT
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    335722 234 -  1189296 CCCCTCTCTTCTAATTCA--TACCTTC----TCAAAGTTTTCcacgaaaagagaaagacaaaaaa------cgcATGTAAAATTGGCTTGTATGTAA------ACTGATAACGGAGGGCC-------AGCGCCAAAAGTTCACA-TATTATTTCATCACTGTGACCGTCCGAAA-----------GAATGTTGCCATTT--------TTCcctct-catt--attttttac---------------cGTTACTGTA-TTGTATTCACCCAattt-ttttg--cgttttttttgcgtttttt---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4072533 237 +  4147112 -----cttttatgatCCGCCCGCTTTT----TTAAGattttccacgaaaaaaagagggcacaaaaaaaactcaaacgtAAAATTGGCTCTCGAGGGAGCAAGTACTGATA----AGGGCC-------AGCGCCAAAAGTTCACA-TATTATTTCATCACT------GTCCGAAA-----------GAATGTCGCCAgtt--------tttttgctccatttAATATTTTTC---------------GACCAGTGTC-AAGTAATAATTCAAttcgtttca--aatttcaataatatttttt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I

a score=-2242.000000
s ce10.chrX              5813958 27 + 17718866 AAAAAACAACAATAGTATTGGACAGGG-
s caeRem4.Crem_Contig0   2502238  5 -  4500979 -----------------------AGAAA
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    335956  3 -  1189296 ------------------------gag-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4072770  0 +  4147112 C
e caeJap4.Scaffold17990   325515 1998 -   357190 I
e cb4.chrX              11151175 25 + 21540570 I

a score=92446.000000
s ce10.chrX              5813985 1021 + 17718866  
s cb4.chrX              11151200 1395 + 21540570  
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   2502243 1199 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    335959 1095 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4072770 1151 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   325515 1998 -   357190 I

a score=22583.000000
s ce10.chrX              5815006 61 + 17718866 CCAC---GATCACAT---CACCGGATGCTCATAATTAAC-CATTCTTTTCAT--------TCAATGCTTACTCAC----------A
s cb4.chrX              11152595 86 + 21540570 ATATCCGTGTCATCATCTCACCGGAAAATCGTAATTAACAATTtcttttcaagcaaaaaaaatgtgctTACTCATGAAGTTTCCAG
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   2503442 59 -  4500979 ACAC---TGTCATCA---CACCGGAAAACCATAATTAAC-ATTTCTTTTC----------ATCACGCTTACTCAT----------A
i caeRem4.Crem_Contig0  C 0 I 21
s caeSp111.Scaffold626    337054 62 -  1189296 CCAC---TGTCATCA---CACCGGAAACcaataattatt-atttcttttcatg-------aTACTTCTTACTCAT----------A
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4073921 62 +  4147112 TCAC---TGTCATCA---CACCGGAAACTTATAATTAac-atttctattcatt-------ctTTTGCTtactcac----------a
i caePb3.Scfld02_0      C 0 I 29
s caeJap4.Scaffold17990   327513 64 -   357190 CTAC---GTTTCAAA---TACCGGATGCTCATAATTAAC-ATTTCTTTTCACCTCGG---CTTCAGCTTACTCA------------
i caeJap4.Scaffold17990 I 1998 C 0

a score=-4975.000000
s ce10.chrX              5815067 14 + 17718866 --AAAAAGT----------------AGTGCTA
s cb4.chrX              11152705 30 + 21540570 --aaaatttcaaaaaaatcgtcaCACTTCCTC
i cb4.chrX              I 24 I 18
s caeRem4.Crem_Contig0   2503522 14 -  4500979 --aaaatct----------------cctCCTC
i caeRem4.Crem_Contig0  I 21 I 11
s caeSp111.Scaffold626    337116 14 -  1189296 --AAGATTT----------------cccatta
i caeSp111.Scaffold626  C 0 I 33
s caeJap4.Scaffold17990   327577  8 -   357190 TCGGGATT------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4073983 29 +  4147112 I

a score=57765.000000
s ce10.chrX              5815081 247 + 17718866 TTACTACGGT------------ATTTCCGATTTTTT----------TTTCGGTTTT-----------CTTTT-----TTAAGTTT-----GG-TTTTTT-------------------TTGCGCAA-A---AAAAA----------GAAAAAAGA--------------TTC-------------ACCTCCTCTATCTCATCATCTAAA-CCGTATTTCAG--TTTTTTGCGCAAG-TTTTTTTTG-----------TGTTACGTTCTT----TTCTCATTTCGTTTTTTCTTCATTTTTCTGATTTTCTGAGGTGTAAACC-ATATGCCAACTCTACACACC-------------TAATCATTTTT--GATAATATCATCATGTT-
s cb4.chrX              11152753 274 + 21540570 TGGATACGGT------------AGCTGGGTtccgttttttgaattatctcgctttt----cctttttttatgtgacattaggttt-----ag-tttttt-------------------CC-----------GCGAATCGG------GGAAATAGGTTTCGTTAG-----TTC-------------ACCTCACCTatctcatcatcttct-tcgtatttcagttttttttgcgcaag-ttttttt------------ACGTTACGTTCTC--CATTATAATTGTTTTCCTTA---GCCCTCCA--CCCTCGCAggtgtaaacattttttcccttTTAACACATC-TTA------AGATAATCGTTTTT--------ATCACTCATTT-
i cb4.chrX              I 18 I 53
s caeRem4.Crem_Contig0   2503547 243 -  4500979 TTACTACGGT------------AGCTGAGTTCCGTT----------TCtcggtttc----tctttttttttg-----ttaggtTT-----Aa-gttttt-------------------gtccaaaa-aaaagagaataag------aaaaaaatatttcgttAG-----TTC-------------ACCTCACCTATCTCATCATCTTCA-Gcgtatttcag--ttttttgcgcaag-ttttttt-------------cgttacgttct-----------ttttctttcttatttattcttca--tttcctgaggtgtaaacgtttttta---TTCTACAAACC-GAA------AGCTAAACCTT-----------------------
i caeRem4.Crem_Contig0  I 11 I 12
s caeSp111.Scaffold626    337163 273 -  1189296 TTCCTACTGT-----------AAGGCGAGTTCCGT-----------TTTCGGTTTCTTCACCTCCTTTTTTA-----CTTggttt-----agttttttt-------------------ccgcaaca-a---aaaaatagg-----agaaaagagaattcgtTAG-----TTC-------------ATTTCACCTATCTCATCATCTTCA-Gcgtatttcag--ttttttgcgcaag-ttttttttg----------gcgttacgttctt----------ttcgtttccttATGTTTTCTTCT--ACCTATAAGGTGTaaaca--tttctcttttcaacacATC-TAA------TGataatcgtttttctctttctcacaCACACTC-
i caeSp111.Scaffold626  I 33 I 15
s caePb3.Scfld02_0       4074012 253 +  4147112 TTACTACGGT------------AGCCCAGTTCCGT-----------TTTCGAATTC------------Gttt-----tttggttt-----ag-tttttt-------------------CCGCAACata---taaaatcgg---------aaaaggtTTCGTTAG-----TTC-------------ACCTCACCTATCTCATCATCTTCAGGcgtatttcag--ttttttgcgcaagtttttttttg----------tcgttacgttctt----------ttcattttcttatttttctctct---------aggtgtaaacatttttttcctttcaacaCATCTTAa------agataatcattttt-tcttgatatcaCCATCTT-
i caePb3.Scfld02_0      I 29 I 15
s caeJap4.Scaffold17990   327585 356 -   357190 TCATTTCAGTCTCCGCCCACACAAttattttctgatatttca----attcaatttt----gcttcttttttg-----tttgttttttcacgg-tttttttGGGTAGCTGCCCTTCGTACCGACCGA-A---CAGAACCGAACCGAAACAAAACGAAACCATTCGGAGATTTCTACCCTGCTACGTATCTACCCTATCTCATCATCTTTgtatgtatttcag--ttttttgcgcaag-ttttttttggcgttatgttacgttacgttcttattatt----ttcttttccttttttttcgcctt--ttcttcAAGGTGTAAACA---CTCCACACTCCACACCTA-TCATTCAATTACCacctgtttttttccttatatCTTCTATCTT
i caeJap4.Scaffold17990 C 0 C 0

a score=-7632.000000
s ce10.chrX              5815328 35 + 17718866 --ATTTTTAAC-----------TGCAAAAAATTTTGTAAAAATATCTG
s caeRem4.Crem_Contig0   2503802 36 -  4500979 --aactttttc----------ttctgagatttttttgaaaagcaacAT
i caeRem4.Crem_Contig0  I 12 I 5
s caeSp111.Scaffold626    337451 25 -  1189296 ----------------------tcttttaactTTTGAAATCGCAACA-
i caeSp111.Scaffold626  I 15 C 0
s caePb3.Scfld02_0       4074280 26 +  4147112 ----------------------tttgggGCGGTTcaagaatgaaacaa
i caePb3.Scfld02_0      I 15 I 1
s caeJap4.Scaffold17990   327941 48 -   357190 CTATCTTTTTGATCCATTTCTGTATCagacatttttgaaacgtctctC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11153027 53 + 21540570 I

a score=102499.000000
s ce10.chrX              5815363 191 + 17718866 TTTCG-CTTGAGGTGT-----GCCAGCTAGCTGATCATCATCGACTCCACAGAACAGTTGTGGATCGAGT--G------GCTGG---TGACAAGCAA-------CGGATC---GGACAACACAAGGTTTGT-----GAGAACCCATTGGTAGGAGCCCCAAAACCA-C--CGAAATAAATCTTCATCAATG-TCTGAATTCGGCAA--CAATGTGG--------GGTTTCGGAGGGG
s cb4.chrX              11153080 211 + 21540570 TTCCGTCTGCAGGTGTCCTGCAAAAGATAGCCG---ATCATCGACTCCACAGAACAGTTGTGGATCGAAT--GAGTGACGCTAGAGCTGACAAGCGA-------CGGATC---GGACAACAAGAGGTATGTGAAAAGAGAGCACGAAC-CCATTGGGTCGAAACCACC--CAAAATAAATCTTCATCAAAC-TCTGAATTCGGCAA--CACTCAGA-----AAGACTCTCTGggaga
i cb4.chrX              I 53 C 0
s caeRem4.Crem_Contig0   2503843 168 -  4500979 -----TGTCCAGGTGC-------AGGATAGCCG---ATCGTCGACTCCACAGAACAGTTGTGGATCGAAT--GAGTGACGCTAG---TGACAAGCGA-------CGGATC---GGACAACAGGAGGTATGT-----GAGAACACAAG-----------TAAAACCA-C--CGAAATAAATCTTCATCAAAC-TCTGAATTCGGCAA--CACTAG-----------------GGGATG
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    337476 171 -  1189296 ------TTTTAGATCC--------AGTTGGCCA---ATCATCGACTCCACAGAACAGTTGTGGATCGAAT--GAGTGACACCAG---TGACAAGCGA-------CGGATC---GGCCAACAGGAGGTGTGT-----GAGAACCCTAGCGAAACC-----CAAACCA-C--CGAAATAAATCTTCATCAAATGTCTGAATTCGGCAA--CAGTGTT-------------------AGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4074307 183 +  4147112 ------ttttaggTGC--------AGTTGTCCA---ATCATCGACTCCACAGAACAGTTGTGGATCGAGT--GAGTGACGCTAG---TGACAAGCGA-------CGGATCGGAGGACAACAGGAGGTATGT-----GAGAACCCTAGTAAAACCGAAATGAAACCA-C--CGAAATTAATCTTCATCAAATGTCTGAATTCGGCAA--CACTGTTG---------------AGGAGG
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   327989 202 -   357190 -TAACCTTTCAGGCGT-------GCCTCTAGCG---ATCATCGGCTCCACAGAACAGTTGTGGATCGGAGAAGAGCGACGCTAGG--TGACAAGCGACGCGGAGCGGATC---GGACAACAGGAGGTATGT-----GA-AACCCGAG-----------TAAAACCA-CTGCGACATAAATCTTCATCAAAG-TCTAAATTCGACAAGGTGCTGTTGCAGTGCAGTGTTGCGACGGGG
i caeJap4.Scaffold17990 C 0 I 1015

a score=-3849.000000
s ce10.chrX              5815554 125 + 17718866 GAG-------AA--GCATTTCACGAAACGAAAAAAATGGGGGCA--CCAGGAGTACAT-A---AAGAAACAACTGT---TCTTTTTTTTCGCCTTCCATCGGAATGATTGGTATGGAACAACATTTTTTCATATGCGAAAACG-------------
s cb4.chrX              11153291 108 + 21540570 aattggcaaaaaagaaatgtcAC-----GGAAAAAAGAGTGGTC--GTGGAAGTACAT-AAAGAAGAAGCAACTGT---TTGTT------------------------------------ATGTGGTATGGTAT-CTGGTTCACtggtgttttttg
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504011 106 -  4500979 AAGTAGCGAAAA--GCATGTCAC-------AAAAAAGAGTGTCC-------AGTATAT-A---AAGAAGCAACTGT---TTTCTCCTCAC-CCGTCTTCCGT----------------CGAAACGGTATGGTAT-TTGGTTCAC---------GTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    337647  95 -  1189296 TAG-------AA--GCATGTCAC----CAGCAAAAAAG-----TGGGGGGAAGTACAT-A---AAGAAACAACTGTCTCTTCCT---------GTCCGTCCC----------------AAATTTCTTTCCGTAT-CTAAACCG-------------
i caeSp111.Scaffold626  C 0 I 246
s caePb3.Scfld02_0       4074490 103 +  4147112 TAGTAGCGAAAA--GCATgtcac----tggaaaaaagagtggTTGGGGGGAAGTAGATAA---AAGAAacaactgt---tttct---------ttttttccg----------------cagttttttCGTGTCT-CTAAAC---------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   328191 1015 -   357190 I

a score=-13363.000000
s ce10.chrX              5815679 106 + 17718866 AATTTCCCTTGTTTGTACGTTATGAGCAAGAAATTCCTCGACTTTT-----------------------TGAT--------TTTTATAGTGGACTACATTGTGCAGCAACT-AATGACATTGTCCTAAAATAACCTAA
s cb4.chrX              11153399  96 + 21540570 ---------------------------------------aattttttatttcgaaaaaattgaatagtgAAACAgactcagtttttttttgattggtgTGTTTTACCAGTGCTATCATTCTATCC---AATAGCTCCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504117  43 -  4500979 ---------------------------------------GACTTTT-----------------------AAAC---------------TTGCGTCGCGCACTTCCGCAAAG------------------ATGGCCTAA
i caeRem4.Crem_Contig0  C 0 I 54
s caePb3.Scfld02_0       4074593  82 +  4147112 -------------CGTATGGTATCTGGTTCA----CCTACCCTTTC-----------------------AAAC------------CTTGCGGAAGACGCACTTCTGCGATC-ACGAAGATTGTCT---GATGGCCTAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   328191 1015 -   357190 I
e caeSp111.Scaffold626    337742 246 -  1189296 I

a score=-1151.000000
s ce10.chrX              5815785 11 + 17718866 TATCGTAATAA
s cb4.chrX              11153495  6 + 21540570 ----ATCAAA-
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4074675 10 +  4147112 -ATAGTTGTAA
i caePb3.Scfld02_0      C 0 I 57
e caeJap4.Scaffold17990   328191 1015 -   357190 I
e caeSp111.Scaffold626    337742 246 -  1189296 I
e caeRem4.Crem_Contig0   2504160 54 -  4500979 I

a score=743.000000
s ce10.chrX              5815796 37 + 17718866 AGCTTTTCAAAAAGTTCAAAATATGACAGTGCTTCAG
s cb4.chrX              11153501 30 + 21540570 AATTATCTAAcgaattcaaaatata-------ttcaa
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4074685 57 +  4147112 I
e caeJap4.Scaffold17990   328191 1015 -   357190 I
e caeSp111.Scaffold626    337742 246 -  1189296 I
e caeRem4.Crem_Contig0   2504160 54 -  4500979 I

a score=-1128.000000
s ce10.chrX              5815833 20 + 17718866 ATAACTTGATAAGTGGCGCA
s cb4.chrX              11153531  4 + 21540570 --------aTCG--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4074742 20 +  4147112 ATTTCTTGATTAGGTCTGCA
i caePb3.Scfld02_0      I 57 C 0
e caeJap4.Scaffold17990   328191 1015 -   357190 I
e caeSp111.Scaffold626    337742 246 -  1189296 I
e caeRem4.Crem_Contig0   2504160 54 -  4500979 I

a score=-16127.000000
s ce10.chrX              5815853 142 + 17718866 AGTTCAGTATTCCC---CACTTTTAAACTTTAAaaa--atttccaaaattta----------------------ttgaaaagtttaattaggatttttggtttttttagctccttagg----------------aacgatttgttgtaatttctcaactggctccacctttaaTATTAAAATAAT---
s cb4.chrX              11153535  77 + 21540570 AGATTAGCTCTaat-agaattttccaaaaattgagatgCCCTCCCA---TCA----------------------TTAGAAGCTTC-------------------------------------------------------------GAG----------------------AACTTTCACACAATC--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504214 148 -  4500979 agtctagtttttttcaggatttgCAAACATTTAAGA--CCTTCTAA---TTAGAGATCATAACTATGATATTATTTGGAAAATTCC---------TTCAGTTTTTGT--GTCCCtaataacaaaattttctacaaaagC--AGTTGGAA----------------------AACTCCAGAAAAGTCAC
i caeRem4.Crem_Contig0  I 54 C 0
s caePb3.Scfld02_0       4074762 136 +  4147112 ----AAACTTTGCT----AActggaaacatcaaaaa---ctacTTA---TTAAGGATTATCTCC----------TTAActagtttc----tgttttttggcTTTTGC--CCCTTTAAGccatgagaaaaaagaaaaagctgtGTTGAAA----------------------AACTTTAACAAAGTCAT
i caePb3.Scfld02_0      C 0 I 6
e caeJap4.Scaffold17990   328191 1015 -   357190 I
e caeSp111.Scaffold626    337742 246 -  1189296 I

a score=17982.000000
s ce10.chrX              5815995 105 + 17718866 TTTTTCCAA-----TTTGCACAATTTTGATTTTGCTCCGGTCATTCATTCAAAGGCGATTTCGCTGATCAGTTACCCAGCATCATCA--TCCCTAATCTGTCG-----TTTCCT------------TTA
s cb4.chrX              11153612 102 + 21540570 -----CTATTTTTCTC----CAAT-----CCTTTCCG------CCCTTCTCTAAATGAATCTAATAACCT--CAACGAGCCTCATCACCCTCCTAATCTGTCA-----TTTCCTCGCCGAGCTTCTTTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504362 110 -  4500979 TTGCTCCGTTTTGCTCGACACAATTT--ATTTTTGCGTCTTC-CCCTTTTCTAAATGAATCTAATAATTC--GAATGAGCCTCGTCA---TCCTAATCTGTCAGCCAGTTTCCTC-----------TCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    337988  91 -  1189296 --------------TCTTcccaattt--atttttct-tctcctcccttCCCTAAATGAATCTAATAACCC-TCATCGAGCTTCATCA---CCCTAATCTGTTG-----TTTCCT------------TCC
i caeSp111.Scaffold626  I 246 I 3
s caePb3.Scfld02_0       4074904  91 +  4147112 --------------TACacacaattt--atttttccatctaCTCCTTTCTATAAATGAATCTAATAACCC--CAACGAGCCTCATCA---TCCTAATCTGTCA-----TTTCCT------------TCA
i caePb3.Scfld02_0      I 6 I 50
e caeJap4.Scaffold17990   328191 1015 -   357190 I

a score=-2563.000000
s ce10.chrX              5816100 46 + 17718866 ---TTTTCTAATTCTTCTAAAGTGACTTG-----GAACTGCGGAAAGAACAGAA
s cb4.chrX              11153714 53 + 21540570 -GTTCGTTTTACTCGCttttgatgatttcaaaaagaaccAATGATGGGATTGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504472 45 -  4500979 -GTTcgttttattctttttttctgat--------ggcCCATAGATGGAACGGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338082 39 -  1189296 CTTCCTGCTTGTTCGTTTCCATTTGT--------GGTC---AGATCGGAA----
i caeSp111.Scaffold626  I 3 I 14
e caePb3.Scfld02_0       4074995 50 +  4147112 I
e caeJap4.Scaffold17990   328191 1015 -   357190 I

a score=-2842.000000
s ce10.chrX              5816146 68 + 17718866 ------------------GGGCTGA----TATCCGAGAACAAAAAG-------GTTGACTTGTCAGAGAGAAAGAGAGATGCAGGAGGTGT-TTCGG-------------T
s cb4.chrX              11153767 94 + 21540570 TAAGAACACACTACCACCAAATAATGGGCGtttgaagaacaaaaag-------aaggaTCGGAGAGAGGGG----------CATGAGGTGTGTTTCGTTTTGGGAAAGGTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504517 58 -  4500979 GGCAGAGATGTTA----GAcgtaat----gttt------caaaaag-------ttag--------gGGAGG----------CAGGAggtgt-ttcca-------------t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338135 74 -  1189296 ------------------AGATTGA----GATCCTAGAACAAAAAGGGTCTGTAATGACTTTTGAGagggagaagga---ggaggaggtgt-tTTGG-----------GTT
i caeSp111.Scaffold626  I 14 C 0
s caePb3.Scfld02_0       4075045 67 +  4147112 ------------------GAATTGA----GATCCTAGAACAAAAAGGGTCTGTGTCGACTTTTGAGAGGCA----------CAGGAGGTGT-TTCGG-----------GTT
i caePb3.Scfld02_0      I 50 C 0
e caeJap4.Scaffold17990   328191 1015 -   357190 I

a score=270062.000000
s ce10.chrX              5816214 435 + 17718866  
s cb4.chrX              11153861 464 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2504575 455 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338209 459 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075112 460 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   329206 471 -   357190  
i caeJap4.Scaffold17990 I 1015 I 20

a score=10439.000000
s ce10.chrX              5816649 29 + 17718866 CCCCCATGCCC----CGCCACGGCTTTT-CCACA
s cb4.chrX              11154325 29 + 21540570 --CCCATCGGCTGGACGA--AGGCTTTT-CTAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505030 25 -  4500979 --CCCATGCCC----CGC--AGGCTTTT-CTAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338668 24 -  1189296 --CCCATGCCC----CGC---GGCTTTT-CTAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075572 25 +  4147112 --CCCATGCCC----CGC---GGCTTTTCCTAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329677 20 -   357190 I

a score=114336.000000
s ce10.chrX              5816678 161 + 17718866 CTGACCCTTTTTATCTTGGTGGCCACTACCACCACCATG--GGAAAAAAGGAACATGAAAAAGTGGGAG-GCGTCAGAGAGAAAC------GGGTGGATGGAAAAAGGAAGACGAGTGTTTTGGGTGGAA--------------CTCACACCATGCAACATTTAAAACATGTTAACCTACATAC
s cb4.chrX              11154354 156 + 21540570 CTGACCCTTTCTGGCTTGGTGGCCACCCC--GCggaatg--gaaaaat-ggaacGTGAAAATGTGGGAG-GCGTCAGAGAGAAACCCTCCGGGGTGGG--------AGAGGACGAGTGTTTTGGGTGGAA--------------CTCACACCATGCAACATTTGAAACATGTTGACCTACATAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505055 143 -  4500979 CTGACCCTTTCTGGCTTGGTGGCCACAC-------gatg--gaaaaatgggaacATGAAAAAGTGGGAG-GCGTCAGAGAGAAAC------GGGTG-----------AAAGACGAGTGTTTTGGGTGGAA--------------CTCACACCATGCAACATTCGAAACATGTTGACCTACATAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338692 144 -  1189296 CTGACCCTTACTGGCTTGGTGGCCAC---------GACGATGCAAAAATGGAACGTGAAAAAGTGGGAG-GCGTCAGAGAGAAAC------GGGTGGA----------AAGACGAGTGTTTTGGGTGAAA--------------CTCACACCATGCAACATTTTAAACATGTTGACCTACATAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075597 143 +  4147112 CTGACCCTTTCTGGCTTGGTGGCCAc---------tatg--gaaaaatgggaacgTGAAAAAGTGGGAG-GCGTCAGAGAGAAAC------GGGTGGA---------GAAGACGAGTGTTTTGGGTGGAA--------------CTCACACCATGCAACATTTAAAACATGTTGACCTACATAC
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   329697 130 -   357190 CTGACCC---------------CCAC----------ACG-----------GATCGTGGAAATGTGGGAGAGCGT---AGAGAAAC------AAAAACC---------AATGGTGAATGGTGCGggtgaaattggaaaaatgtcccccccACAATGCAACATTTTAAACATGTTGACCTACATAC
i caeJap4.Scaffold17990 I 20 I 626

a score=-2980.000000
s ce10.chrX              5816839 110 + 17718866 AC-AACAATTTTTGACGCAAGCCACT---AATGCCAGTTGGTTTCTT--------------CATTACTGT-----A---GATGATGAACGGAGCGGAAGTCTGTGAAAGGTGAAACTTCGGAAGTCGT---------TTTTGTTT-----
s cb4.chrX              11154510 106 + 21540570 AC--AACATTTTTGACGTACGCCGTCA--ACCGTCAGTGATTTTCTGCGCTT-------Acaattactgtagatga---gaTGAC--------caga--------gaaaattgaaggatGAAAGttcg---------ttttattt-----
i cb4.chrX              C 0 I 91
s caeRem4.Crem_Contig0   2505198 109 -  4500979 AC-TAAGATTTTTGACGTACGGCGTCAGTAACgtcaat-cttttttcttctc-------accaTTACTGT-----A---GATAAC--------CAGAAGTCAG--AAAAACCACATCTTTAAAGTACA---------GTTTGTTT-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338836 103 -  1189296 ACACCAAATTTTTGACGTGCGTCGAC---ATCCTCAGTTCTTTTCTTGCTTT---------CATTACTGT-----AGCCGACCAC--------CGGAAATGAGACATAAAGTACA----------------------GTTTCTTTCGATA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075740 124 +  4147112 ACACCAAA-TTTTGACGGGCG---------CACTcagttcttttcttctttttcttctcactatTACTGT-----A---GGCTTT--------CGGAAGTTCACGGAGAAGTGCATACCTACAATTTTGCAgagattgttgtttttgtag
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329827 626 -   357190 I

a score=-11377.000000
s ce10.chrX              5816949  85 + 17718866 GCAAAGC--CTG-----AAG-------CCAACAATTTAA--TCAGTTTCA--------TTTTGT-ACCATTAATCTTC------CCATCTTTTCTGACTTTCATTGTCACAAAAAA
s caeRem4.Crem_Contig0   2505307 108 -  4500979 TTGTAGCCACTTTAGACAAT-------TTGGATATCTAACTGTGGCATCAAACATGAATTCTGT-GTCTGCTACTTTTAAAATATTAATCCGACATGCTaaagttttcacaaaagt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    338939  71 -  1189296 ---------CTT-----GGTTTGAATACCGGATATTCAGAATTAAC------------TTCAGTAATCCGCAATTT------------CCCTTTGTCCtttttttGTCG-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075864  79 +  4147112 ---------cTT-----AAT-------CCGGATATTCAAACTTGACATCA------GTTTCAataatctttgtttttt---atgtttgcCTTCCGCActgaatactttg-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329827 626 -   357190 I
e cb4.chrX              11154616  91 + 21540570 I

a score=-307.000000
s ce10.chrX              5817034 31 + 17718866 CAAACTTTTAATCTCAGACG--ACACAGTTTAC--------------
s cb4.chrX              11154707 33 + 21540570 CAAAATGCTAATCCTAGATATTCCATAGTCCAC--------------
i cb4.chrX              I 91 I 55
s caeRem4.Crem_Contig0   2505415 31 -  4500979 caACTAGTTAGTCACCAACA--ACATTATTTat--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339010 44 -  1189296 -AAAGTTTTAATCTCATATG--CCACTGTTTTAAAATAACAGCTTAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075943 41 +  4147112 -aaaattataatcCCATATG--CCACAGTTGCAACCCAAAAA---AG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329827 626 -   357190 I

a score=2664.000000
s ce10.chrX              5817065 62 + 17718866 CTACT-TTGTCACCTACTTAACTTTTTTGT----------TC--------TATGTATATGTAAATCTTAGTCTGAGAAAGT
s caeRem4.Crem_Contig0   2505446 65 -  4500979 ------catttattcaaatacgttgttttt----------tcagttaaacTTACTAAAAGTTAATCTTTATCTGGGAAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339054 79 -  1189296 TCACTACCGTCACccattcaatttgttttt--tgcattAACTTGTTAAGTCAAGTAGAAGTTAATCCTTATCTGAGAAAGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4075984 78 +  4147112 TCAATGGGTTTagtcactttgtttttttttcattcataaatt--tcaaagCGCCTCAAAA-TAATCTTCATCTGGGAAAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329827 626 -   357190 I
e cb4.chrX              11154740 55 + 21540570 I

a score=-35505.000000
s ce10.chrX              5817127  91 + 17718866 TTTCTTGAAGTTCTTTT--------TGGTCAGTCCCAACT----CTAAAACTCTAATTTGCACTCTCCTGTCCCACTGCTTC-----------------------------------TCACT---GTTAGCACTC----------------GCG------CAC
s cb4.chrX              11154795 139 + 21540570 ----------ttttttg--------aggCTTCTTCCAAATTGGACTTAATTATGAGTATAGATTATGGTTATAATCTCCTTC---ACCAAAAGAcaattagttcaaaaaatttgtt-tcaccTCTACAGTTTCCCCACGTGATGTCTCTgagtagaaa--aaa
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   2505511  88 -  4500979 ------------CACTT--------AAGCTCACAAAAAAT--GACACAATTTT---TTCGCACTCT-ATCATATGCACCCTC---------------------------ATTCCTT-TTCCC---ACAGTTAGCC----------------GCAAGCA--AAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339133  81 -  1189296 -------------TTTC--------CGG---GCAAAAAAT--GACacattcatttat------------------ttttttc---------------gcaCTTCT----TTCTACTCTAGGT---ACAAGCACCC----------------TTATTCATTGAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4076062 114 +  4147112 -------------TCTTAATAGccaagg---aagaaaaat--gacacaccaattttttcgcactat-----tctcttttttctctatcctATAGTAAACACATCCGAGATTTTAAT-TAGCC---TCCACAACCT----------------TTA------GGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   329827 626 -   357190 I

a score=49882.000000
s ce10.chrX              5817218 82 + 17718866 TGACAGGATAG-CCACGCCCCAAGAGTTG--AGGTGTTTTTGATTGGTTGCCTTGTTCCCGA----------AATATTGGCAACATAACAGGTTT
s cb4.chrX              11154934 82 + 21540570 agatag-ataG-CCACG-CCCTCTAAACTTGAGGTGTTTTTGATTGGTAGGCTGGTTCCGTG----------GGTTGAGGCAGGACAACAGGTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505599 78 -  4500979 TGGTAG---GA-CCACG-CCCTCTTGCAT--AGGTGTTTTTGATTGGTCGGCTTGTTCCTGG----------GATGTAGGCAGGATAACAGGTTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339214 81 -  1189296 TGGTAG-GCTGACCACG-CCCATGTGTAG--AGGTGTTTTTGATTGGTTGGCTTGTTCCTGA----------GATATAGGCAGGACAACAGGTTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4076176 81 +  4147112 CTGGAG-ATCG-CCACGCCCCATAAGTAT--AGGTGTTTTTGATTGGTAGGCTGGTTCCTGG----------GATATGGGCAGGACAACAGGTTT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   330453 92 -   357190 TGGTAGGTCAG-CCACGCCCCCATTTCAT--AGTTGTTTTTGATTGGTTGGCTAGTTCCTAGTTCCTCCCAAGATTGTGACAGGATGACAGGTTT
i caeJap4.Scaffold17990 I 626 I 144

a score=31805.000000
s ce10.chrX              5817300 66 + 17718866 AGGAA--ATATTCGGTTTGTAAT-GGAACAGGATGATGAATGT-TTTCCAAGAT-AAATGTTTCGAA----ACAC
s cb4.chrX              11155016 65 + 21540570 AGGAAGTGTACTTGGTTCCGAACGCG-----GGTGATAAATGG-GTTTCGAGATCCTATGTTGCGAA----ACGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505677 66 -  4500979 AGGAA--GTACTTGGTTCGGAAC-CGAACAAGGTGATAAATGG-GTTTCGAGAT-CTATGTTGCGAA----TCAC
i caeRem4.Crem_Contig0  C 0 I 29
s caeSp111.Scaffold626    339295 71 -  1189296 AGGAA--GTATTTGGTTCGGAAC-CCAACAAGGTGATAAATGGTTTTTCGAGAT-CTATGTTGcgaaacacacac
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       4076257 67 +  4147112 AGGAA--GTACTTGGTTCGGAAA-CGAACAGGGTGATAAATGGTTTTTCGAGAT-CTATGTTGCGAA----ACCC
i caePb3.Scfld02_0      C 0 I 10
e caeJap4.Scaffold17990   330545 144 -   357190 I

a score=-10560.000000
s ce10.chrX              5817366  32 + 17718866 ----------------------------------------------------------------TATTTTTGAGGATTAAAAGATTGTGAAATTTT-------------
s cb4.chrX              11155081 105 + 21540570 TTACGGAGACAAAGAGTGGGATAGATAACATGTGAtttttgttcacgctcttttttcggataggactttttaccgttttttcga----agaatttttagacctttttta
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    339376  32 -  1189296 ----------------------------CATGATCC----------------------------ACTATTCGAAGACT----------AGGATATATT-----------
i caeSp111.Scaffold626  I 10 I 33
s caePb3.Scfld02_0       4076334  38 +  4147112 ----------------------------CATGAGAC----------------------------ATTATTCACAGACCTAAAAA----AGGGTCTCTA-----------
i caePb3.Scfld02_0      I 10 I 7
e caeJap4.Scaffold17990   330545 144 -   357190 I
e caeRem4.Crem_Contig0   2505743  29 -  4500979 I

a score=311.000000
s ce10.chrX              5817398 2 + 17718866 GA
s cb4.chrX              11155186 2 + 21540570 ga
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4076379 2 +  4147112 AA
i caePb3.Scfld02_0      I 7 C 0
e caeJap4.Scaffold17990   330545 144 -   357190 I
e caeSp111.Scaffold626    339408 33 -  1189296 I
e caeRem4.Crem_Contig0   2505743 29 -  4500979 I

a score=-5420.000000
s ce10.chrX              5817400 34 + 17718866 AAACGCTTG-----------------------AAATCCTAT-----TTCCTATTTTTTCCAG-
s cb4.chrX              11155188 63 + 21540570 aaatattcaTAAGCATTTTAAACAGTGTATAtaaaccttttttttgtttccactTTCTTGAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505772 26 -  4500979 AGACACTTATAAG-------------------AGATCTT------------------TTAGGA
i caeRem4.Crem_Contig0  I 29 C 0
s caePb3.Scfld02_0       4076381 26 +  4147112 --GTACACGTGAG-------------------AAgttgttt----------------ttccga
i caePb3.Scfld02_0      C 0 I 1
e caeJap4.Scaffold17990   330545 144 -   357190 I
e caeSp111.Scaffold626    339408 33 -  1189296 I

a score=4689.000000
s ce10.chrX              5817434 276 + 17718866 ---------------------------------------------AAA------ACATTATCATAAGAACACTTTTCAAAAAC--------AA---------ACATCTAC--------A---ATATC---ACTATCCTTCAATTACACA----AAAAA------ATATTTACCAACAGTTACCGTAATCACACTAAATCCTAGAAGTGCTTTCGAACTTTTTTTTCGCATCGT---------TTTACA--------GAATGATGGATTCTGAGTAGTTCTTGAAACCCAAGGGGCAAGGTTTTTTAATTAAATCTCTATTACCACGTCCCCCTTCATTCTCC------------TGATGCATCCTGAAAATATCC--GTGACAAACTAACACAAAAGCG
s cb4.chrX              11155251 336 + 21540570 AATACCTTACGAACAGTGTTTaaactttttcactt-----tttttaga------aattttcattctagaatatttacaaattc--------tatattttcacattccattctttttcaa---atatc-ttgtTAAAATTCCAGGACTAACTATAAAAACCTTGCAAGCaaaaaaacagctaccgtaacc--------ctatAGGACTACCTTCGAACTTTCGTTT--ATTCATCGGTTTtcgtttttgatg-----aaaaaatgc-tcaaaagtAGTTCTTG-----------GTAAGGTTTTTTAATTAAATCTCGGTTag-cttt---tctcttttttttgttctcctcTCTTAATTTCACACCAAAATATCC--GTGA----CTAAC---AGAGCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2505798 325 -  4500979 TACATTTTGCCAG-AATGATT--ATTATTGCAATTATAAGGTTTTAGGGTGTGTGAGTCCAGTTATAGACTCGTTAAACATCC--------CA---------ACACAATTATATGATAATACATATT-ATATTGACTCATTTAGATGaa----aaaaaCCT---------------AGCTACCGTAACCAGTTCTCATTGTGGAAGTACTCACGAACTTTTGCCT--CTTCAT---------TTTATGATACCTTCGAGTGATGG-CGTCAAGTAGTTCTCATGGACCAC---GGAAggttttttaattaaatctCGGCACC-ATGT---CCTTCATTCTTTG-----------TGATGTATCCTGAAAATATCCGTGTGA----CTAACAGAAGAGCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339441 254 -  1189296 ---------------------------------------------AGA------ACAtgg-------aattatttgaaaatac--------aa---------atattTTA-------GA---AGGTT-CTAGTAAGCTCCATTCATCCA----AAAAA------GAGTTGTTTTCCAACTACCGTAGCCTAAAGCAATTTGAGAAGTGCCTCCGAACTCTCA-----CGTCAA---------TTTACGACACCAC-GAATAATGG-CTTCGAAAAGTTCTTGAGCGCCT----GAAAAGGTTTTTAATTAAATCTCGACGcc--------tcttcattcttc------------tgaTGCATCCTAGAAAAATCC--GTGA-------GGGGAAGAGCA
i caeSp111.Scaffold626  I 33 C 0
s caePb3.Scfld02_0       4076408 284 +  4147112 ---------------------------------------------aag------aaatac-------gactgattaaaaaaaccttttgcgga---------gttttttattctgagaa---acaTTACTACCAGAAACCACCgaacca----aaaaatcactcaTGTTGATTGgc-actaccgtaacccaaggCAATTTTAGAAGTGCCTTCGAACTTTT------TGTCGT---------TTTACGACACCAAGGGGTGATGG-TTCCAAGTAGTTCTAGAGCGtctc---aaaaaggtttttaatTAAATCTTCTCCCCAAAGG---CCTTCATTCTTC------------TGATgcatcctgaaaaaatcc--atGA----CTCCAGGAAGAGCA
i caePb3.Scfld02_0      I 1 C 0
e caeJap4.Scaffold17990   330545 144 -   357190 I

a score=18829.000000
s ce10.chrX              5817710 43 + 17718866 CATGTCCTGAC-TGCGCAATGAAACGATTCAATTAGGCTAA---------------------AAA
s cb4.chrX              11155587 54 + 21540570 CATGCCCTAGGATGCG----GTAGCGATCTAATTATACTG-------CGGCGGAGAGAGAAGGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2506123 63 -  4500979 TATGTCCTCTG-TGTGCCTTGAAACGATTCAATTAGACTAAAAAGTCTGCCAAAGAGCGAC-ATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    339695 61 -  1189296 CATGTCCTCTA-TGCGCATCGAAACGATTCAATTAGACTAAAAAGTCTGCCAGAAGGCT---AAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4076692 63 +  4147112 CATGTCCTCTA-CACGCATCGAAACGATTCAATTAGGTTAAAAAGTCTGCCAAAGGGCCTG-AGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   330689 43 -   357190 CATGCCCCCGA-TTCGCTTCGAAACGATTCAATTAGGCTAAAAA---------------------
i caeJap4.Scaffold17990 I 144 I 620

a score=-65820.000000
s ce10.chrX              5817753 204 + 17718866  
s cb4.chrX              11155641 437 + 21540570  
i cb4.chrX              C 0 I 59
s caeRem4.Crem_Contig0   2506186 336 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    339756 366 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4076755 367 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   330732 620 -   357190 I

a score=-2492.000000
s ce10.chrX              5817957 10 + 17718866 ---------------ATACAGTAAC---
s caeRem4.Crem_Contig0   2506523 10 -  4500979 ------------------CATCAGCAAC
i caeRem4.Crem_Contig0  I 1 I 124
s caeSp111.Scaffold626    340122 17 -  1189296 AGGCC----------ATACCTTGACAC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4077122 27 +  4147112 AGGCCATTCAGACCTATACCTTGACAC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   330732 620 -   357190 I
e cb4.chrX              11156078 59 + 21540570 I

a score=-418.000000
s ce10.chrX              5817967 19 + 17718866 CCTGAGTAACCATGTTGTT--
s caeRem4.Crem_Contig0   2506657 19 -  4500979 CCCGGTCAACCTTGTCTTC--
i caeRem4.Crem_Contig0  I 124 I 26
s caeSp111.Scaffold626    340139 21 -  1189296 TCCTATAAACCCTATCTTATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4077149 17 +  4147112 CCCTATAAACC----GTTATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   330732 620 -   357190 I
e cb4.chrX              11156078 59 + 21540570 I

a score=-24651.000000
s ce10.chrX              5817986  59 + 17718866 --------------------------------------------------------------------------------------------------TTCGTTATTT----------------TCTATATTCATTGTTTTCCGC-------------------------------------GTCCGTATTATGTTTTC--GGCATTA--------------TCCG
s cb4.chrX              11156137 116 + 21540570 TTCATGACCC--C-TTCTCTATTTCCCTCTGGTT-CAGA--------------------------------ACGAA-------AATCCGC-----CGTTCCG----------------------TGTATA---GTTTTTAACCAT-------------------------------------TacagttttctgttttccgCGCGTCAACATTTGCCTTTCTTCCG
i cb4.chrX              I 59 C 0
s caeRem4.Crem_Contig0   2506702  51 -  4500979 TTCata------c-ttttctgt---------------------------------------------------------------------------------------------------------------------------------------------------------------------ttttctgttttc--cgcGTCAACATTTGCA-TTCTTCCG
i caeRem4.Crem_Contig0  I 26 C 0
s caeSp111.Scaffold626    340160 190 -  1189296 -TTATGAACTGTC-TTTTTTACTCCCTTTCATTGACAGA-----------------------------CTCGCTAAGTTCATCACCCTTTGTATCCTTTTTACCCATTTCTCAAAACCCCCGTCTGTACA---GTTTTTatccccccccccttttctcCGCGCGTTCCGAATTTTGTCtgttttcggttttctgttttc--cgcGTCATCTTACGCGTTCTTTCCG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4077166 180 +  4147112 -TCGTAGACCGTCtttttttACTCCCTCCTCCTTAGAGACACTCAGTTCATCACCTTTTGTAACCTTTCTCACCGA-------Acccctt-----ttttttgtatattgaTTGAAA--------TGTACA---GTTTTTAAcccc-------------------ttcagaatttt-tgtgttttcggttttctgttttc--cgcATCATCTTACGCGTTCTTTCCG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   330732 620 -   357190 I

a score=455354.000000
s ce10.chrX              5818045 846 + 17718866  
s cb4.chrX              11156253 839 + 21540570  
i cb4.chrX              C 0 I 26
s caeRem4.Crem_Contig0   2506753 820 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 31
s caeSp111.Scaffold626    340350 776 -  1189296  
i caeSp111.Scaffold626  C 0 I 19
s caePb3.Scfld02_0       4077346 846 +  4147112  
i caePb3.Scfld02_0      C 0 I 63
s caeJap4.Scaffold17990   331352 852 -   357190  
i caeJap4.Scaffold17990 I 620 C 0

a score=-1380.000000
s ce10.chrX              5818891 14 + 17718866 GATTCT---------------CTTAGAAA
s cb4.chrX              11157118 12 + 21540570 -aattt----------------tcaaaga
i cb4.chrX              I 26 C 0
s caeSp111.Scaffold626    341145 14 -  1189296 gaatct---------------ctcaaaaa
i caeSp111.Scaffold626  I 19 I 48
s caePb3.Scfld02_0       4078255 29 +  4147112 GAATTTGCTATGCTTCTGAAATTCAAGTA
i caePb3.Scfld02_0      I 63 I 4
s caeJap4.Scaffold17990   332204 11 -   357190 -AGTTC---------------TCCAAA--
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2507573 31 -  4500979 I

a score=-1834.000000
s ce10.chrX              5818905 22 + 17718866 TAGGTTT-----------TACTTCTATA----TTAGG
s cb4.chrX              11157130 18 + 21540570 ------------------taa-tCTATAACTCTGAAG
i cb4.chrX              C 0 I 5
s caePb3.Scfld02_0       4078288 37 +  4147112 tgagtttgaaaactttgatagttccagaatttttaag
i caePb3.Scfld02_0      I 4 I 10
s caeJap4.Scaffold17990   332215 19 -   357190 ---TTTT-----------TGGTTTCACA----TAAGG
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    341159 48 -  1189296 I
e caeRem4.Crem_Contig0   2507573 31 -  4500979 I

a score=-15226.000000
s ce10.chrX              5818927 46 + 17718866 --------CAAAAAATGCAA---------TTCCAAACGAT--------------------------ACCATAAT-GTCTTTTACAAATAT
s cb4.chrX              11157153 70 + 21540570 --------AAGAAACCCtgag----aatgtttgaaaaaccCTTTAAACCATCTAGGAAACACAAAAACCATTAGTATTTCAT--------
i cb4.chrX              I 5 C 0
s caeRem4.Crem_Contig0   2507604 31 -  4500979 --------caaaaacctAGA---------TTTG---------------------------------ACCATCAG-GTTTTAT--------
i caeRem4.Crem_Contig0  I 31 C 0
s caePb3.Scfld02_0       4078335 58 +  4147112 --------caaaaaacgaaatattcaatgtttcataaaAGTCTACATTTG----------------CCCATTATGATTTTAT--------
i caePb3.Scfld02_0      I 10 C 0
s caeJap4.Scaffold17990   332234 51 -   357190 CGTCCAATAATATATCTAGG---------TTTCATAATTTCTCCGTTTCTCCTC------------GCCACC------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    341159 48 -  1189296 I

a score=93927.000000
s ce10.chrX              5818973 152 + 17718866 TCTGAGAATGATCCATTGTTTGAGAAACTCGTAAAA-----------CATGGA---CCATGAAG-GGTTTATG--TCTCTCTATT-TGTATGTGCAT----------------------ACCCGATTTCCGTTGTCAACGCGTCGC---------TTTTTGACAATAGTAT-----------TTTTCA----------ACCACCTGGGTCCGCT-AGAGGTCC
s cb4.chrX              11157223 166 + 21540570 TCTGACGATGATCCATTGTTTGGGGAACTCGTAAAC-----------CAGGGTAGGCCCTAGACGGTTTTATGTCTCTCTCTATT-TGTATGTGCAT----------------------ACCCGATTTCCGCTGTCAACGCGTGGCTGTCCTGTTTTTCTGACAATAGTA------------TTTTCA----------ACCACCTGGTTCCGTT-TGTGGTCC
i cb4.chrX              C 0 I 46
s caeRem4.Crem_Contig0   2507635 148 -  4500979 TCCGTAGATGATCCATTGTTT-GGCAACTCGTAAAA-----------CTGGAC---CCATAGAC-ATTTTATG----CCTCTATT-TGTATGTGCAT----------------------ACCCGATTTCCGTTGTCAACGTGTACC---------CTTTTGACAATTGTA------------TTTTCA----------ACCACCTGGTTCCGTTGGGTGGTC-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    341207 145 -  1189296 TCGGACGGTGATCCATTGTTTGGAGAACTCGTAAAA-----------CAGGGG---CCATTGAG-GTTTTATG----CCTCTATT-TGTATGTGCAT----------------------ACCCGATTTCCGTTGTCAATGCGTATC---------CTTTTGACAATAGTA------------TTTTCA----------ACCACCTGGTTCC-----Gtggtcc
i caeSp111.Scaffold626  I 48 I 12
s caePb3.Scfld02_0       4078393 149 +  4147112 TCGACCGGTGATCCATTGTTTGGTGAACTCGTAAAA-----------CAGGGG---CCATTGAG-GTTTTATG----CCTCTATT-TGTATGTGCAT----------------------ACCCGATTTCCGTTGTCAAAGCGTCTC---------CTTTTTACAATTGTA------------TTTTCA----------ACCACCTGGTTCCGTT-AGTGGTCC
i caePb3.Scfld02_0      C 0 I 8
s caeJap4.Scaffold17990   332285 199 -   357190 TCTTCGTCTGATCCATTGTTTGAGCAACTCGTAAAAATCTGTCCTTCCTTCAT---CCATTTAC-GTCTTGTT------TCTATTCTATATGTGCACAACAACCATAACCATAACCATAACCCATTTCCCGTTGTCATCGCGCTGC-----------TCTGACAATGACACGTAGTCGTCGGGCTTCGAACAAATCGTACCACCTGGTTCCGC--AAAGGAC-
i caeJap4.Scaffold17990 C 0 C 0

a score=-3498.000000
s ce10.chrX              5819125 43 + 17718866 -GCTCAGAAGG---GTTTTTTGTCAAAGGACACGTCGG-------TGGTCCTCG
s caeRem4.Crem_Contig0   2507783 39 -  4500979 --CTCAGAAGA---GGTTTTTGT-GAATGACATCCAGGACGCTCG---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    341364 33 -  1189296 -ttcaaAAAGC---GGTTTTCAT-AAATGACATCTAGG----------------
i caeSp111.Scaffold626  I 12 C 0
s caePb3.Scfld02_0       4078550 33 +  4147112 -TCAAAAAGAG---GGTTCACAT-AAATGACATCTAGG----------------
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold17990   332484 31 -   357190 ATCTAGGAGGGTGAGGTGCCTTT-GATTCTCG----------------------
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11157389 46 + 21540570 I

a score=482288.000000
s ce10.chrX              5819168 1357 + 17718866  
s cb4.chrX              11157435 1462 + 21540570  
i cb4.chrX              I 46 I 63
s caeRem4.Crem_Contig0   2507822 1378 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 36
s caeSp111.Scaffold626    341397 1407 -  1189296  
i caeSp111.Scaffold626  C 0 I 272
s caePb3.Scfld02_0       4078583 1472 +  4147112  
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17990   332515 1314 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-17269.000000
s ce10.chrX              5820525 60 + 17718866 TGCCGGAGATTCTAT-GATTCGCCGTTTTTGTTTCTTGTTTCAAGCT-----CAATGATTCCT---------------------------------ACA
s cb4.chrX              11158960 49 + 21540570 GTCCGGACGGAATACGGGTCCATCAGTCCCGCCCACTTTTC-----------GGAAA---------------------------------------TCA
i cb4.chrX              I 63 C 0
s caeRem4.Crem_Contig0   2509236 92 -  4500979 tttcgaaaaaaacac--aCACATCTCTACTATCCTTCACTCGGTGCCGGACGGGAAGGGTCCATCTC-----ATCAGTCCCTCCCACATTTCGAAATCA
i caeRem4.Crem_Contig0  I 36 C 0
s caePb3.Scfld02_0       4080080 88 +  4147112 AGTCGTTGAAAATAC------ATCTCTACTATCTTCTACGCGACGCC-----GGACGGACCCCTTTTCATCAGTCAGTCCCACCCACATTTCGAAATCA
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold17990   333829 44 -   357190 -----------------------ctcttctttttttttt-------------tgttgctcccGACCCCAACAAACAT-------------------ACA
i caeJap4.Scaffold17990 C 0 I 174
e caeSp111.Scaffold626    342804 272 -  1189296 I

a score=522.000000
s ce10.chrX              5820585  67 + 17718866 GTAGCACCGAAAACGTTG--------TC---------TACCGCGCTTAAAT--TTCTGGA---------TT-----TCAATCAC-----TT-----------------AGCTAAAACGTATA------------------------------
s cb4.chrX              11159009 135 + 21540570 GTAGCCCGGTGACCAGTGCTTCTCATTC---------CATCACTTCGCAATCGTTTTGACATGTGCTCTTTTCTCGGCAACAGCAGtcacttttttcgtttttttttcaactcgGCTACTTTT------CGAAAGACCCGTCGTCAGTTA--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2509328 132 -  4500979 GTAGCCCGGTGACCAGTG--------CCTTCTCCTTTCATCACTGCGAAATCGTTTTGACATATGCTCTTC-----GCAACAGC-----ctcctctccattttttttcgactCAATTACTCTTTCCAAGCGACTGACACGACATCAGATA--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4080168 103 +  4147112 GTAGCCGGGTGACCAGTG--------CT--CTTCTTTCATCACGTAGAAATCGTTTTGACATTTGCTCTTT-----TCAACAAC-----CT-----------------AGTTCATCTTCTTC------------GACACGACATCAGttagt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   333873 174 -   357190 I
e caeSp111.Scaffold626    342804 272 -  1189296 I

a score=63723.000000
s ce10.chrX              5820652 130 + 17718866 ---TTTTATTAGAT--CTGCAAAATAGGTTTGTAACC---AATTGATAAGAAAATGATTTGATACTGTTTCGGATA-AC---------CAAACTGACCTAGATATCCGTTTTCGTCTACACACGAG-AGTTGGTGTACTAGGCATAAGA
s cb4.chrX              11159144 138 + 21540570 GCTTTTTACGGTCTGATCGaaaaaaaGGTTTGCAGCCccaaactgataagaaactgATTTGATACTGTTATGGATA-CTCCTACCGTACAGACTGACCTAGATATCCGTGTCAGTCT---TGC----GGTTCTTGTACTAGGC---AGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2509460 138 -  4500979 GTTTTTTATTGTCT-AGCGAAGATAGGTTTTGCAACC---AACTGATAAGAAACTGATTTGATACTGTTATGGATA-GCCCTACCGTACATACTGACCTAGATATCCGTGTCTGTCT---TGCGGGGGGTTCGTGTACTAGGC---AGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    343076 129 -  1189296 ---ttttattgttc--AACATCATTGATTTTGCAAGC---TACTGATAAGAAAGTGATTTGATACTGTTATGGATACCCCCTACCGTACAGACTGACCTAGATATCCGTGTCTGTCT---CGCGAA------CTGTACTAGGC---GAA
i caeSp111.Scaffold626  I 272 C 0
s caePb3.Scfld02_0       4080271 134 +  4147112 ---ttttattgttc--aCAGACATAGGTTTTGCAACC---AATTGATAAGAAACTGATTTGATACTGTTATGGATA-ACCCTACCGTACATACTGACCTAGATATCCGTGTCTGTCT---CGCGAAGGGATGATGTACTAGGC---AGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   333873 174 -   357190 I

a score=21228.000000
s ce10.chrX              5820782 168 + 17718866 GACCTAGTTTGG-------------------------AATAGAA---AATCGG-TGTCGCCA-CC---AGA----A---AATGACCACCAGT------------AGAAA-AAGTTATGAGAAAAACATCT----CTTATC---GTATA--------------TCTTCTT-----GTCGCGTGTGCCCTATTACTTTT-CTGACCGTGCTGGTTTTTTTTTC-----GTTTTGACTGCGATAGCGACCCT-CATT
s cb4.chrX              11159282 193 + 21540570 GACCTAGTTTCTTCTttagtcttcttttttttactggGACAGTG---AATCGG-TGTTTCGA-GATACTGAAG--AGT-AGTGACAACTGTA------------GGAGA-ATGTTAT-GGAAAAACATCTCATCCTTATCTGTATATC--------------TATTCTTCTTTAGTCGCGTGTGCCTTATAACTTTTCCTGATCGTGCTGGttttttt--------------ACGGCGTGA--G---------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2509598 165 -  4500979 GACCTAGTTTCT-------------------------GATGAAG---AATCGG-TGTCGCCA-AA---TGAGT--AGTAAGTGACCATTAGA------------AGAAATAAGTTATAAGAAAAACATCT----CTTATC---GTATC--------------TCTTCTT-----GTCGCGTGTGCCTTATAACTATTTCTGACCGTGCTGGttttttt-------------GACGGTGTGA--GGCCGT-TATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    343205 191 -  1189296 GACCTAGTTTCTGAttgag-------------atagagagagagaaaaatcgg-tgtcgagagaa---aga----agt-agtgaccactcgg------------agagaaaaGTTATGAGAAAAACATCT----CTTATC---GTATC----------------TTC--ATTTAGTCGCGTGTGCcttataactttttctgaccGTGCTGGTTTTTTGTCCGCCGACTACGTCAAACGC----GTCCGTTTATT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4080405 173 +  4147112 GACCTAGTTCCT-------------------------AAGAGTG---AATCGG-TGTCGCTA-AA---TGA----AGT-AGTGACCACTAG--------------AATGAAAGTTATAAGAAAAACATCT----CTTATC---GTATC----------------TTCTTTTTTAGTCGCGTGTACCTTATTACTTTTGCTGACCgtgctggttttttttct-----ctttggtCAATGCGA-TGTCCGTCCAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   334047 189 -   357190 agcctTGTTTCA-----------------------------------ACTAGGCTGTTTTTA-AA---AGTTGCTGGC-AGTGATAAATTGATTTGATATATATATAGC-GTGTTACGGAAA----ATCT----CTTACC---GTACTCAGTGACCTAGATGTATTAGTAAGTATCGGTGTCTGTCTCGGTGTACTCGCCAGAggc-ctagtttttttttt-----ttttggatgttgatt--ttcttt-----
i caeJap4.Scaffold17990 I 174 I 73

a score=16233.000000
s ce10.chrX              5820950 65 + 17718866 GGAGGTGACGAGACGGTGTCGCCGGTGGGTGGTCGAATGCGTGTGGGGGGCGCTCGGGTTCGCAA
s cb4.chrX              11159475 52 + 21540570 GGAGGTGAC--GACGTCGTCGCC----CTGTATAGGATGCG------GGGCGCAT-GGTTCGCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2509763 55 -  4500979 GGAGGTGAC--GACTACGTCGCC----CGATAGACGGTATGACT---GGGCGCTC-GGTTCGCAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    343396 61 -  1189296 GAAGGTGAC--AACGCCGTCGCCGATAGGTGGTTGAATACGACA--GAGGCGCTCGGGTTCGCAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4080578 50 +  4147112 GGAGGTGAC--GACGTC----------GGAGATAGAATGCGAGT--AGGGCGCTC-GGTTCGCAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   334236 73 -   357190 I

a score=42631.000000
s ce10.chrX              5821015 212 + 17718866 ---------CATCGCCTGCAATCAGAGTTCGGA-GAGGA-GGGCGCCTCCAAGGTCACAATATTATTTGC-CAGTATTTAGATAGGATGGGGCGGGTGGTGAAGAGATAGTTTTT---------AACGTGTCTCCCGTGTGAACAT------GAGGCGCGAT--ACAGAGCGGTAACAGA------------------GAGAAG--------------CAGGAAAAAGGTGAGAGAAGGACCTCGA-------GATGCATCCATCCCGGCGTGTGTCCGT
s cb4.chrX              11159527 178 + 21540570 ---------CACCG-TTGCAATCAGAGTTCGCA-GAGAAGAGGCGCCTCCAAGGTCAGTATATTATTTGC-CGGGTGGTAGATAGGTCGCGAC----CACGTAGAGATTGttttt------------------------------t------tGAGCGCAAC--ATACAAA---AGTTAG------------------GAGAG---------------GAAAAAGgtgagaagagaaagaaagatg-------GCCGATCCCGGA-----GGATGTCCCT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2509818 204 -  4500979 ---------CACCG-TTGCAATCAGAGTTCGGA-GAGA--AGGCGCCTCCAAGGTCACCATATTATT----CGGTCGGTAGGTAGGATAGGACG---GGTAAAGagatagtttttatttttcaacgtGTGTCTCCG--ATGGACGT------GAGGCGTGAT--ACACGGA-GTAACTga------------------gagagt--------------gaaaaaaaaggtgaGAGGAAGGACCTGA-------GACGTATCCACA-----ATGTGTccc-
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    343457 228 -  1189296 ---------CACGG-TTGCAATCAGAGTTCGGAGGAAG--AGGCGTCTCCAAGGTCACAATATTATTTGCGGGGTAGGTAGATAGGACA-GTC-----GCGAAgagatagttttt----tttcaacccTGTCTCTC--GTGGACGTCAGGAGGAGGCGCGAT--TCACTGT-ATAATCGAGAGGAaaggggagagagagagata--------------caCAAAAAAGGTGAGAGAAGGAACTCGA-------GACGCATCCATA----TGGGTGTCATC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4080628 184 +  4147112 ---------CACCG-TTGCAATCAGAGTTCGGA-GAGG--AGGCGCCTCCAAGGTCACCATATTATTTGCGAGGTAGGTAGATAGGACA-GTC----AAAAAAGAGATAGTTTTT----TC---AACGTGTCTTCC--GTGGACGT------GAGGCGTGAt------------------------------------gagaga--------------tacaaaaaaggtGAGAGAAGGACCTCGA-------GACGCATCC--A----CGGGTGTCTGT
i caePb3.Scfld02_0      C 0 I 16
s caeJap4.Scaffold17990   334309 210 -   357190 CTTCTCGCGCAACG-CTT------GGGTTGGGT-TGGG--AGGCGCCTCGAAGGTCACAATATTATTTGTCGGGTCTGCAGGTAGGGTAGGGTA---GGTTAGGatacga----------------------------aacgaaac------gaaacgcaagcaacacagg-aaaaaaaa------------------gagatatttttttCGACGACGAAGCGACTGGCGTGAACGAGACCGCGGAAGATGCGATGCGATGCGA----TGCGTGCCCGT
i caeJap4.Scaffold17990 I 73 C 0

a score=-2606.000000
s ce10.chrX              5821227 7 + 17718866 TTGAGAC--
s cb4.chrX              11159705 6 + 21540570 -TAAtag--
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold626    343685 3 -  1189296 ----TAG--
i caeSp111.Scaffold626  C 0 I 4
s caeJap4.Scaffold17990   334519 7 -   357190 --GGgagaa
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4080812 16 +  4147112 I
e caeRem4.Crem_Contig0   2510022 4 -  4500979 I

a score=65517.000000
s ce10.chrX              5821234 231 + 17718866 GAAACGAGAAAAAAG---------ACTGC-AAGCACTTTAACCGTCCTAATTTTTTGTTGTCTGCATCTCATCGAGAATCAATTATCTCTAAGGA------AC---ATTCACACTGTCCAC---TGACTTTT--CTTCTTTTTCTCACCCC-CAGGC----ATCCAAAATACTCCCACTGGCCACTCTGATGCATCGTCCCCTGACCTCT-----------------------------TTTCAAT---------------TGTTTGAACTCTGTTTCAT-----GCTGCTCTGTGTTCA---CTAGAA----CAG
s cb4.chrX              11159719 232 + 21540570 --gaagaaaatgaagagaaaaactACTGC-AAGCACTTTTACTGTCCCCA-TTTTCA-CGTCTGCCTTTC-------ATCAATTATATCCAGTaactttccacttttttctcacagACCAgacgtttctttt--tttcgttttctcacACC-AAggc--agaaagaaaaaaattccctcGGCGACT-------------CCTCGACCCgg-----------------------------tttcaaa---------------tgtttgaacttggttttttttcgagcgGCTTCTTGTTCT---CTGAGT-------
i cb4.chrX              I 8 C 0
s caeRem4.Crem_Contig0   2510026 223 -  4500979 --gaagagaaagaaa---------actgCAAAGCACTTTTACCgtcctcatttttca-tgtcTGCCTCTCATCGAGAATCAATTATCTCTAGTAACTTTCCAC---TTTCTCACCGACcat-cgtctttttt--cttttctttctcaccCC-CAGGC----CACAAAAAAGACTCCCTCGGCGACT-------------CCTCGACCCgg-----------------------------tttcaaa---------------tgtttgaacTTGGttttttt----GCGACTTTTCGTTCT---CTGGAC------G
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    343692 206 -  1189296 gagatgagaaaaaa-----------ctgc-AAGCACTTTTACCGTCCTTTTTTCGTG-TGTCTATCTCTCGGCGAGAAACAATTATCTCTAGTTACTTTCTAC---ATTCTCATCTATTTT---CTTAG---------TTAGTCTCAGC------------CAGAGAAAAGTATCCCTTGGCTATT-------------CCTCGACCCGG-----------------------------TTTCAAA---------------TGTTTGAACTTGGTTTTTT-----GCAACTCTCCGTTCT---TTGGGT-----TT
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       4080828 221 +  4147112 gagacgagaaaaaaa---------tctgcaaaGCACTTTTACCGTCCTTATTCTTCT-CGTCTGTCTCTCGGTGACAGTCAATTATCTCTAGTTACTTTCTAA---ATTCTCAccgatctt---cttcttct--cttctctttctcacC------------CAGAAAGATGATTCCCTCGGCGACT-------------CCTCGACCCgg-----------------------------tttcaaa---------------tgtttgaacTTGGTTTTTT-----GCGGCTCCTCGTTCT---TTGGGtgtctctc
i caePb3.Scfld02_0      I 16 C 0
s caeJap4.Scaffold17990   334526 252 -   357190 ---gagagaaaaaaa---------actgc-aagcACTTTTACCGTCCTC---------TGTCTGTCTCTCATCGGGAATCAATTATCTCTAGTCACATTTCGT--------------CCAA---TACCCTTTAGTTTCTTTTTCTCGCCCCTCTGGCCTGGCCCAAAGGCGATCGCTTCTACATAC---ATACAT----CCACGATCCGACCCTACCACCAGACGTACCGTGGGAtactcttcaaaaaaaaaatagcagggcgttcg---ttcgttcgtt------cgtCTCCTAGATCTAGAATAG---------
i caeJap4.Scaffold17990 C 0 I 39

a score=-10310.000000
s ce10.chrX              5821465 46 + 17718866 ACTTTTCACACCAAAAT------CATATCACTGAAAAATTGC-----------TG----CA------TTTCAA
s cb4.chrX              11159951 43 + 21540570 --------------GAT--ggtttggttttcaaaaa-gttgc--aggtttttaag----aa---aac----aa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2510249 63 -  4500979 GCTCTTCCT----AGAT--GTTATGGGTCAACAAAA-GTTTCCGAGCTTGCCAGGTCTCAA---AACCTTGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    343898 60 -  1189296 GATCTTCTCCCAAAGAT------TGGGTCAACAAAATGTTGCAAAGTGAAACTTG----AA---TAGGTTTAG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081049 69 +  4147112 gtttttctaCAAAAGATAAAGTGCGGGTCAACAGAAGTTTGCAGAACAATTCTAG----AAACCTATTCTGAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   334778 39 -   357190 I

a score=61307.000000
s ce10.chrX              5821511 199 + 17718866 A--TC------CTACCGTAATCTTTGCAATTTTTGATGTTCTAGCAAGATTCGTCG--TTTTTTCATTTC---AACT--ATAT-----------AAACAAAAGTGCAGGTTGTCTGTGTAACAAACCAGAATAGAAGGCGT----GCATGTGTTTT------CTGC----AGAAAATTCAT-------CAAATGTT-TTTATGTCTATTTGTTTTT-TCTCGGCCAGCACATT---TCTGTTTTTGATTCT
s cb4.chrX              11159994 219 + 21540570 a--ttttttgagtacCGTAACCC----AATTCGTCAAG---------GGATTCAGCATGTTTTTCATCGA---CACGTAGtagtgacaaaaaaaaaacaaaagtgcaTATTGTGTGTGGAACAAACCAGAATACGGGGCGTGGTAATGTGTTTTtt------ctgcagaaaaaaaaatcat-------caggCGTTGTTTATGTCTGTTTGTCCTA-TCTCAGCCATAaaatgtcttcttttttctgtcat
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2510312 212 -  4500979 A--ATCctagactacagtaatcctca-aGTTGCTTATGTTCTAGTGTGAATCTGAATTCCCCTTCATCTA---CACGTAGTAT-----------AAACAATAGTGCATGTTGTCTGTGGAACAAACCAGAATAAGAGGTGT----ACATgtgtttt------ttgcag-caaaaaattCAT-------CAGGCGTTGtttgtgtctgtttgtccta-TCTTTGCCgtaaaatg---tcttttttctgtcAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    343958 202 -  1189296 A--TTTCATGGCCACAGTAACCCTCG-A---TGTTCAGTTCTAGACAGAAAATGAC--AGTTTTCAG---------Gcgatga-----------aaacaaaagtgcAAGTTGTCTTTGGAACAAaccagaataaaaaacat----acATGTTTTTT----GGCTGC---aaaaaaaCTCAT-------CAGGCGTTGTTTATGCCTGTTTGCCCTA-TCTTTGCCTTTaaatg--tcttcttttttgtaat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081118 209 +  4147112 AAGTGAGatggctacagtaaccc--------gggtTAGTTCTAGATGAAGAAAGAA--CCTTTTCATCGA---CACGTAGTAT-----------AAACAAAAGGGCAAGTTGTCTATGGAACAAACCAGAATAAGGGGcat----acatgtttttttttcgattgc----aaaaaattcat-------cagGCGTTGTTTATGTCTGTTTGCCCTA-TCTTTGCCttaaaatg--actttttttctgtcat
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   334817 201 -   357190 --------atcctttcttcattttag-aGTTCTCCATTCTCTC---------------CCTTCCTATCTATCTCATTTACTAA-----------AAACAAAAGTGCAGGTTATCTTTGGAACAAACCAGAATGA-ATGCGT----GCATttgtttt----tgctga----aaaaaactcATCTATATACCGTCGTTGtttattctttcttgttaaattcttttttcttctatt--ttctttttctgatttt
i caeJap4.Scaffold17990 I 39 I 105

a score=-14545.000000
s ce10.chrX              5821710 42 + 17718866 GAGCTGCGTCGATATTCAGAAAAGAGGGTCAC----T----------GAAGCTAAC-------------------------------------------------------
s cb4.chrX              11160213 33 + 21540570 CAACAGCTC----------AAAA-------------tgagaaagacaaaaaatagc-------------------------------------------------------
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   2510524 46 -  4500979 CAACAGCTC----------AAAAAACACTCATCCAGTAAAAAAGCAGTGGAATGAC-------------------------------------------------------
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    344160 89 -  1189296 cAACAGCAC-----------AAAAACATTCATCCAGT--------AGAAGAATGACA---TTCTTTCCTAAAATAAATATCTACTGAAAATGCATCATTGAGCCAatcaaa
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081327 73 +  4147112 caACAGCAC----------AAAAAACATCCAACCAGT----AACCAGAAAGAGCACAagtctatttcaaaaaacaa-----tacagaA-------------------CAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   335018 105 -   357190 I

a score=840.000000
s ce10.chrX              5821752 30 + 17718866 CTTGTCCATTCGAGAACACATGCTCTTTTA
s caeRem4.Crem_Contig0   2510574 27 -  4500979 TATCTTCATATGGCAACACATGCTC---CA
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    344249 27 -  1189296 accaaatttttgaCCGGAAATTCTC---CA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081400 27 +  4147112 GTTACCCATTTGGAAGCACACGCTC---CT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   335018 105 -   357190 I
e cb4.chrX              11160246 51 + 21540570 I

a score=-12757.000000
s ce10.chrX              5821782 50 + 17718866 ATTTAAGTAGGGGTAAGCATTTCGA---------------------CAAAAAAACGCG--TAAATATTCAAC--A-
s caeRem4.Crem_Contig0   2510601 50 -  4500979 ATTCA------GGTGCTCTTCTTCT-----------cgattc----cgaaaaaaagtt---cagagtTGGTCCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    344276 30 -  1189296 ATTCA------ggttctctttttgt---------------------tgaaaaaaaat-------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081427 42 +  4147112 TTTCA------Ggtgctctcttttt---------------------ccaaaaaacatg---aaacattcGGG----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   335123 73 -   357190 ATACAAACAATGATGACCATTTGGCGACACCCGCTCCCATTCCCATCCAGGTACTATCCATGCATATTCAAC---G
i caeJap4.Scaffold17990 I 105 C 0
e cb4.chrX              11160246 51 + 21540570 I

a score=78706.000000
s ce10.chrX              5821832 504 + 17718866  
s cb4.chrX              11160297 487 + 21540570  
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig0   2510651 487 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    344306 494 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081469 466 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   335196 488 -   357190  
i caeJap4.Scaffold17990 C 0 I 54

a score=12450.000000
s ce10.chrX              5822336 55 + 17718866 --------GGCTCCTGGAAGACGGAGGAA-ATTAGCGATTCACTCGCACTTTTAAAGTTGGAGA
s cb4.chrX              11160784 54 + 21540570 --------GAAcataggaaaaaaagaac--attagGGATTCAGCCGCACTTTCGGACTTAGGAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2511138 46 -  4500979 --------GA--CTGGGGAAACCGCGGA--ATTAGGAATTCATCCGCACTTTTAGACT------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    344800 59 -  1189296 gagaaaagga----gaaaaaaatgcagaa-attAGCGATTCATCCGCACTTTGAGTCCTGAAAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081935 52 +  4147112 --------ga----gagaaaaacggagaatatTAGGAATTCACTCGCACTTTCAGACTTAAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   335684 54 -   357190 I

a score=27918.000000
s ce10.chrX              5822391 305 + 17718866  
s cb4.chrX              11160838 391 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2511184 321 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    344859 351 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4081987 334 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   335738 458 -   357190  
i caeJap4.Scaffold17990 I 54 I 13

a score=-7455.000000
s ce10.chrX              5822696 28 + 17718866 ATATAGGGG-----TACACTGATAG---AGCACAAG
s cb4.chrX              11161229  1 + 21540570 g-----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2511505 22 -  4500979 GAA-----------GTGGCTGATAG---AGCACATG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    345210 27 -  1189296 gccAAGGGT-----CAGACTGATAGATCAGCC----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4082321 36 +  4147112 GGCGACGGGACGGACTGACTGATAGAGCAGCACATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   336196 13 -   357190 I

a score=56419.000000
s ce10.chrX              5822724 252 + 17718866 TTGCACGAGG-----TTTTAATCATTTGGTGTCCTCGTTTTAACCTTTATCTTCTTGT----TTTTTAGCTGTATCTCAAC--------CTCTCCTATTTGCATGGACT-TTCCTACTGCCTTTCTTTCATTTTTTT---TAACAGCTCCCAACACTCCTATTTT---CA---ATCGTCTAATGACAAGATAAGAC-------------CTAAAACATGGAATACATGTT-------------TTTTTTCTCTGTTCAATCTACTACTT-CTCCAGCTCTTTTT-------TATAGTGTTTGTACTCTTCTTT
s cb4.chrX              11161230 272 + 21540570 --gcacgaggtttttttttaatcattcgGTGCCCTTGGGCTAACCTTTGTCTTGTCGTTCTATTTTTTAGCAATTACCTTCATTTTTTACGTTTCTATTTGCATGTTCTATTTATACTGCTATTCTTTTTTATCTCCAGTCTACAGCTcccaaaaaaccttttttttgtg---ATCGTCCCATGACTAGATAAGAC---TTATTTCTCCCTCATACGTGGAATACATGTT-------------TTTCCACTTC-----------T-CTC-Taacagttgttttttt-----tatcgtttttgctttttttt--
i cb4.chrX              C 0 I 39
s caeRem4.Crem_Contig0   2511527 273 -  4500979 CAGCACGAGGCACAGTTTTAATCATTTGGTGCCCTCGTTCTAACCTTTATCTTGTCGT----TTTTTGCCCATTTCCCATTATTTTC--CTCTCCTATTTGCATGGAC--TTTTTACTGCCATACTCTCCTTCC------CGATAGCTCCC--AACACCTACTTTT--TG---ATTGTCCCATTTCAAGATAAGG-----GGTTTTAGTGTTAAACACAGAATAcatgtttttcattctttACTTTCCACTTT-----------TACTT-CTACagctatttttttaaatgaatcgCCTTTCCATTCTTCG--
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626    345237 246 -  1189296 ---CACGAGGT----TTTTAATCATTCGGTGCCCTTGTTCTACCCTTTATCTTGTCA-----CTTTTAGCAGTTTCCCACCAGTTT---CTCTCATATTTGCATGGAC--TTTTTACTGCCATACTCTTT----------CGACGGCTCCtaaaaaacttcttttt--tt---actgtCCCATGACTAGATAACACACATTTTTTAGtggtttgaaattgaatacatgtt-------------tccctttttt-------------ctcaaaacagctattttttgatattttc---------attcCTCTTT
i caeSp111.Scaffold626  C 0 I 11
s caePb3.Scfld02_0       4082357 248 +  4147112 GCGCACGAGGT----TTTTAATCATTCGGTGCCCTCGTTCTAACCTttatcttcttat----tttttagccgtttcccaatttttc---tactCCTATTTGCATGGAC--TTTCCACT-----------------------CACAGCTCcccaaaaaactcttttt--tttcgattgtcCCATGACAAGATAAGAC---TTTTTCCATCGTTAAAAATGGAATAcatgtt-------------tttcatcttt-----------cccTCTTAACAgctattttttgatgtttttccttttttgattcttcctC
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold17990   336209 170 -   357190 --ttACACGGT----TTTTAATCATTCGGTGTCCTCGTTCTAACCTTTATCACCTTAT----------------------------------------TTGCATGGAC--TTTTC-------------------------------CTCC------------------TC---TCCATCCTA----AAGATAAGAc----tttttaatgcttt--------attcttgtt-------------ttctttcttt-----------ttttc-ttac-ttgactctttGGACAGTGTTGTATGGGATTCCTTCTT-
i caeJap4.Scaffold17990 I 13 C 0

a score=27.000000
s ce10.chrX              5822976 33 + 17718866 AATTTCGTTCAGTTGATTCAAAAACTTCAAAAT
s caeRem4.Crem_Contig0   2511812 22 -  4500979 AACATGTTTCACCTG-----------TTAcaac
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    345494 22 -  1189296 GATTCACTTCAGCTG-----------CTACAGC
i caeSp111.Scaffold626  I 11 I 11
s caePb3.Scfld02_0       4082615 26 +  4147112 AATTCGCCTCAGCTGTTT-------TTTGCAGC
i caePb3.Scfld02_0      I 10 I 12
s caeJap4.Scaffold17990   336379 21 -   357190 AATTTCTTTAGTTTG------------CAAAAT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11161502 39 + 21540570 I

a score=185594.000000
s ce10.chrX              5823009 688 + 17718866  
s cb4.chrX              11161541 658 + 21540570  
i cb4.chrX              I 39 C 0
s caeRem4.Crem_Contig0   2511834 659 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    345527 696 -  1189296  
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       4082653 691 +  4147112  
i caePb3.Scfld02_0      I 12 C 0
s caeJap4.Scaffold17990   336400 693 -   357190  
i caeJap4.Scaffold17990 C 0 I 27

a score=-11045.000000
s ce10.chrX              5823697 52 + 17718866 AAA------------GTACCAGTGTTG---AGGGCA---------------------CATCTTCAAATTACCAGGTTACAAGTGAGCC
s cb4.chrX              11162199 61 + 21540570 AATCAGAACAA----CCAAAAGATCAGCCAGAGCCA-------------GAAGCTAATATACCCCAG----------ACCAGTGGAAC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2512493 70 -  4500979 AAACGGTGGAAGTTGCTGAAAATGTAG---AAGTTATGGAAGAAGAAAGGAAGCCTACATTC---------------ACAAATGGATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    346223 37 -  1189296 ATG------------AAAAGAATATTG---AAGCAT---------------------CGTTG---------------TCCAGTGAAGC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4083344 37 +  4147112 AGG------------ACAAAAATGAGG---AAGCTT---------------------CTTTG---------------ATCAGTGAATC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   337093 27 -   357190 I

a score=-5925.000000
s ce10.chrX              5823749 88 + 17718866 TGTTCAGATGCCACAAATGCCGATACCAGTTATACCATCGTTTTTG-------AAAAATAGTC--------TACCAGCCCCAATTCCGATAACGCCGACACAA
s cb4.chrX              11162260 73 + 21540570 T---------------ATTCTTACCCCAATTATGCAGACGTTTTTA-------CAAACACCAT--------TGGCTGCCCCGATTCCAATGACACCAGAGACA
i cb4.chrX              C 0 I 35
s caeRem4.Crem_Contig0   2512563 73 -  4500979 A---------------CTTCTAACCCCAATGATGCAGTCTTTTCTA-------CAAACTTCTC--------TACCTGCTCCTATAGCTATAGCACCAATCCTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    346260 91 -  1189296 AG---------CTGTGACTCCAACTCCAACTGTGAACTCTCCGTTCCCTCAAGCCAATACTATGCCAAGCATACCAGCTCCAATTGCTTTGCAACCGATT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4083381 76 +  4147112 AG---------CAGTGACTCCAACTCCAGCTGTTAATCCTTTCTTT-------CCAACAACAT--------TGGTAGCACCAATTGCAGTGACTCCACAA---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   337120 48 -   357190 ----------------ttttcagcaCCA-------------------------GTACCAGTTT--------TACCTGCACCAATTGCCTTGGCTCCA------
i caeJap4.Scaffold17990 I 27 C 0

a score=-2240.000000
s ce10.chrX              5823837 77 + 17718866 TCTGCAAATGTTGAGCGATCAAATAGCCCATCCATAGAAGA------------AGCTCTTCTCTTAACACTTTCACAGCAACAGTTTGC
s caeRem4.Crem_Contig0   2512636 77 -  4500979 -----TCCTATGGACAAACTATAAAAG-CACCAACATCAGA------AGAAACCAAACTTCTACTAGGTTTTGCGCAGTCTGATTTCCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    346351 71 -  1189296 ATGACCCATGTGGACAAGATGCAAAGCCCAGTTATAGCTGA------------------TTTGTTTGCACTCACATCAGAACAGTTTCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4083457 71 +  4147112 ATCACAAATGTTGACAAAATGCAAAGTCCATTGATAACAGA------------------CTTCCTCAAGTTGACCCAGGAGCAGTTCCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   337168 86 -   357190 GGTGTCAATGGTGATCAACC---AAGACTACCTGTATCCAGTTTTGAGGAAACCCAGCTTCTCCTTCAGCTCACTCAAAATCAGTTTTC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11162333 35 + 21540570 I

a score=1248532.000000
s ce10.chrX              5823914 2149 + 17718866  
s cb4.chrX              11162368 2136 + 21540570  
i cb4.chrX              I 35 C 0
s caeRem4.Crem_Contig0   2512713 2170 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold626    346422 2201 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4083528 2208 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   337254 2178 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-7442.000000
s ce10.chrX              5826063 19 + 17718866 CCTACTCGGCC---C------CCTACTT-
s cb4.chrX              11164504 22 + 21540570 CTGACCCAGGCAGCT------CTTGCTT-
i cb4.chrX              C 0 I 8
s caeSp111.Scaffold626    348623  8 -  1189296 --------------T------TTTGCAA-
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       4085736 14 +  4147112 --------------TACACAATTTGCTT-
i caePb3.Scfld02_0      C 0 I 30
s caeJap4.Scaffold17990   339432 13 -   357190 ----------------CATGTTCAACATT
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2514883 43 -  4500979 I

a score=-1559.000000
s ce10.chrX              5826082 22 + 17718866 GCAAACCGACCTAGTGCATTTT--
s cb4.chrX              11164534 14 + 21540570 GTGAACAGG--------AATAT--
i cb4.chrX              I 8 I 5
s caeSp111.Scaffold626    348639 14 -  1189296 GCCAACAGA--------ACTTT--
i caeSp111.Scaffold626  I 8 I 5
s caeJap4.Scaffold17990   339445 22 -   357190 GCCAATCGAGCAAAC--ACCCTTA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4085750 30 +  4147112 I
e caeRem4.Crem_Contig0   2514883 43 -  4500979 I

a score=1676.000000
s ce10.chrX              5826104 8 + 17718866 ACTGTGAT
s cb4.chrX              11164553 8 + 21540570 AATGCGAA
i cb4.chrX              I 5 C 0
s caeSp111.Scaffold626    348658 8 -  1189296 AATGCCCA
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       4085780 8 +  4147112 AATGCCAA
i caePb3.Scfld02_0      I 30 C 0
s caeJap4.Scaffold17990   339467 8 -   357190 TGTGTCAA
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2514883 43 -  4500979 I

a score=14968.000000
s ce10.chrX              5826112 32 + 17718866 CATTGCAAAATTCCATTTGATGTAAGT-----TTAGA
s cb4.chrX              11164561 27 + 21540570 CACTGCAATATTCCATTCAACGTAAgt----------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2514926 27 -  4500979 CATTGTCAAATACCATTCAACGTAAGT----------
i caeRem4.Crem_Contig0  I 43 C 0
s caeSp111.Scaffold626    348666 26 -  1189296 CACTGCAGTTCTCCTTTCCACGTAAG-----------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4085788 32 +  4147112 CACTGTAGTACTCCATTCAACGTAAGTTCACC-----
i caePb3.Scfld02_0      C 0 I 25
s caeJap4.Scaffold17990   339475 27 -   357190 CATTGCAATATTCCGTTTGCTGTAAGT----------
i caeJap4.Scaffold17990 C 0 C 0

a score=-4057.000000
s ce10.chrX              5826144 26 + 17718866 ATAGAAAGATTTGAATAATTGAAAAG
s cb4.chrX              11164588 19 + 21540570 -------aacttctttttttcagaac
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2514953 19 -  4500979 -------ACATTTAATATTCGAATCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    348692 16 -  1189296 ----------TTTGATTCTCCAACCA
i caeSp111.Scaffold626  C 0 I 5
s caeJap4.Scaffold17990   339502 12 -   357190 --------------ATCCATTAATAA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4085820 25 +  4147112 I

a score=328742.000000
s ce10.chrX              5826170 1548 + 17718866  
s cb4.chrX              11164607 1687 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2514972 1600 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    348713 1537 -  1189296  
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_0       4085845 1568 +  4147112  
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold17990   339514 1678 -   357190  
i caeJap4.Scaffold17990 C 0 I 2533

a score=119991.000000
s ce10.chrX              5827718 775 + 17718866  
s cb4.chrX              11166294 873 + 21540570  
i cb4.chrX              C 0 I 1406
s caeRem4.Crem_Contig0   2516572 854 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    350250 791 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4087413 813 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   341192 2533 -   357190 I

a score=624.000000
s ce10.chrX              5828493 3 + 17718866 CGG
s caeRem4.Crem_Contig0   2517426 2 -  4500979 -gg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    351041 3 -  1189296 CGG
i caeSp111.Scaffold626  C 0 I 193
s caePb3.Scfld02_0       4088226 3 +  4147112 Caa
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   341192 2533 -   357190 I
e cb4.chrX              11167167 1406 + 21540570 I

a score=-1623.000000
s ce10.chrX              5828496 41 + 17718866 GCTATATGGAAAATTGCAGTCTTAAAAATTTCTGAAAATTC-
s caeRem4.Crem_Contig0   2517428 39 -  4500979 --GGTCAACGGAAttg-aatcacaaaaaatacagGAATATTC
i caeRem4.Crem_Contig0  C 0 I 203
s caePb3.Scfld02_0       4088229 24 +  4147112 ---------gaaat-----tcacaaaaagttttgaaga----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   341192 2533 -   357190 I
e cb4.chrX              11167167 1406 + 21540570 I
e caeSp111.Scaffold626    351044 193 -  1189296 I

a score=-2119.000000
s ce10.chrX              5828537 422 + 17718866 AAATGTTCAAAAAGTGTTCAGCTCAGTATATGAAACTAAACTAACGCGATTATtcaaagttgaaaagtggaaatggggaagttattta-----aaaccgcttctaaggtgccaaaaaatcgagaaacactaaaacaattttaaaaatttgaaaatttctcattttgtttcaaaaatgataattactcaatttttgcaacttttttgaaagtcgtctataaaaaTTGAACAAATTCTACTAATTTTTCCAAATTCGAAGGAGTATCCTCAGTTGAGATTTAGTCTGAATTTTCCTATAATTCAACCGGTTATCACCTTTGAAAATACTCCAAAAGTTTTTAGATTTTTCGGATTTCAAATTTTTTGTAGACTT---CCGAAGTTATGACAAAACTGAGT---------TTTTACCACTT-----------TTTTTAAACTTTAAATGAAAA
s caePb3.Scfld02_0       4088253 344 +  4147112 agatatTTCAGGAAAG-------AAATATACGACAGCAACCT-------TCACACTAGATTCGGAAGATGAATGGAGAATGTTTTTCATGAACGAGCtggttatga------aaaaaatt--------------cactttgaaaaa------------------tggtacATCAATAAGAAGCACATAATTGTAATGATT------AGGATTGCTTATTAGGATTGTCTTAGTCC-----ATTTTGATAA-----------------CACTAGAAACTT--TATAAA-------ATAAATCAACT--------CTTTTG---------TAATgtttttcatccttttctggaaatgaattctGAACAAACTtggcaaaaaattaaaaaaaaaacaaggaagaagttatttttctaattaacGCCGCTAACTGttcagctgaaaatggaaa
i caePb3.Scfld02_0      C 0 I 121
e caeJap4.Scaffold17990   341192 2533 -   357190 I
e cb4.chrX              11167167 1406 + 21540570 I
e caeSp111.Scaffold626    351044 193 -  1189296 I
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=0.000000
s ce10.chrX              5828959 139 + 17718866 CTTTTAGAAGTTGTTTCAAAAAGTGTTTCAATGATTTTCAGAAAGTTTCAGCGTTATAAAAGCGACTCAATCAATTTTCCCATTGACAATACTCCATAGTTCATTTCTTCAAAAAATGGTTTTCCAATCCCTGCAGTAG
e caePb3.Scfld02_0       4088597 121 +  4147112 I
e caeJap4.Scaffold17990   341192 2533 -   357190 I
e cb4.chrX              11167167 1406 + 21540570 I
e caeSp111.Scaffold626    351044 193 -  1189296 I
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=1178.000000
s ce10.chrX              5829098 129 + 17718866 GTTGCAACGCTCAAGGACAATGTACGATATTCTATGAAGCAATTATTTTTTTAAATGAGCACTTTTTTCAC--AATATGTCTCCAACATCAATAGCTAAAAAACCTGAGTCGGTTACCTGGAAAACGTATA
s caePb3.Scfld02_0       4088718 110 +  4147112 GTTCcaa-gttcaaaaactat-taTGACGTTCTATGAATTCA-----GTTTCCAACAACTCCCATAATCATCAAAGATCACCCCAACACCTAT---TACAAAACCT-----------CTGGAATACCCATA
i caePb3.Scfld02_0      I 121 C 0
e caeJap4.Scaffold17990   341192 2533 -   357190 I
e cb4.chrX              11167167 1406 + 21540570 I
e caeSp111.Scaffold626    351044 193 -  1189296 I
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=-123.000000
s ce10.chrX              5829227 18 + 17718866 TCTTATCAAAACATCACT
s caePb3.Scfld02_0       4088828 16 +  4147112 TCTTATC--GTTTTCAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   343725 13 -   357190 tcttatc---agttca--
i caeJap4.Scaffold17990 I 2533 C 0
e cb4.chrX              11167167 1406 + 21540570 I
e caeSp111.Scaffold626    351044 193 -  1189296 I
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=-2040.000000
s ce10.chrX              5829245 17 + 17718866 ACCAAAAAACAAG-------CGAT-
s caeSp111.Scaffold626    351237 17 -  1189296 ACAAAGGAATACC-------CCGT-
i caeSp111.Scaffold626  I 193 C 0
s caePb3.Scfld02_0       4088844 21 +  4147112 ---GATGAACAACACCGAATCTGT-
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   343738 23 -   357190 accaaaaaaaaag--aagagttgTT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11167167 1406 + 21540570 I
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=422.000000
s ce10.chrX              5829262 1 + 17718866 T
s cb4.chrX              11168573 1 + 21540570 T
i cb4.chrX              I 1406 C 0
s caeSp111.Scaffold626    351254 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4088865 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   343761 1 -   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2517467 203 -  4500979 I

a score=390799.000000
s ce10.chrX              5829263 1057 + 17718866  
s cb4.chrX              11168574 1070 + 21540570  
i cb4.chrX              C 0 I 431
s caeRem4.Crem_Contig0   2517670 1037 -  4500979  
i caeRem4.Crem_Contig0  I 203 I 2
s caeSp111.Scaffold626    351255  919 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4088866 1003 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   343762 1009 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-5907.000000
s ce10.chrX              5830320 10 + 17718866 TGGA--AGAGTT---
s caeRem4.Crem_Contig0   2518709  6 -  4500979 ------ACAAAA---
i caeRem4.Crem_Contig0  I 2 I 10
s caeSp111.Scaffold626    352174 10 -  1189296 --TATTACATTT---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4089869  8 +  4147112 --aa--acaatt---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   344771 10 -   357190 -----TTCACTTCTT
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11169644 431 + 21540570 I

a score=81407.000000
s ce10.chrX              5830330 135 + 17718866 T---AAATTTCAGTACATTCTTCAAGATGACAGACTTCCGTACCCAGAATGGGCGCGTGGGTACGAAAATCGAATTTTGAATATGAGTTTTTTGATTCACGATGCAGTTGTTAAGGTTCAAAATGATAGCGTCGGAGG
s cb4.chrX              11170075 135 + 21540570 TAT---ATTTCAGCATATCCTCGACGACAAACGACTTCCCTATCCGGTTTGGGCCAGAGGATATGAGAATCGAATTATGAATATGAGTTTCTTAGTTCACGATGCTAttgttaaaattcaaaattctactATTGGAGG
i cb4.chrX              I 431 C 0
s caeRem4.Crem_Contig0   2518725 138 -  4500979 TATAAAATTACAGTACATCCTTCAAGACAAAAGACTACCGTATCCGACGTGGGCTGCAGGATTTGAAAATCGTATTTTGAATATGAGTTTTTTGATTCACGATGCcattgtgaaaattcaaaacacaaCTGTAGGagg
i caeRem4.Crem_Contig0  I 10 C 0
s caeSp111.Scaffold626    352184 134 -  1189296 ----TGTTTACAGTATATTCTCCAAGATGATAGATTAGCTTATCCACAATGGGCTAATGGGTACGAGTTTCGTATCATGAatatgagttttttgattcatgaTGCTATTGTTAAGATTCAAAATCGTACTATTGGTGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4089877 129 +  4147112 ----t-----tagaaaattcttgATGATGACCGGCTACCTTATCCAGAATGGGCTCGAGGATTTGAGAAAAGGATTTACAACATGAGCTTTTTGATTCACGATGGTgttgtgaaaattcaaaatgaaactattGGAGG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   344781 135 -   357190 ---TGCGTTTCAGACCATCTTGCAAGATCCCCGATTCCCGGTACCAGAATGGGCTCATGGATATGAAGATCGCATTTTGAATATGAGTTTCTCCATCCACGATAAGATtgtgaaaattcaaaacgaatCAATTGGAAG
i caeJap4.Scaffold17990 C 0 C 0

a score=2007.000000
s ce10.chrX              5830465 3 + 17718866 TGA
s caeRem4.Crem_Contig0   2518863 3 -  4500979 taa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    352318 3 -  1189296 TAA
i caeSp111.Scaffold626  C 0 I 21
s caePb3.Scfld02_0       4090006 3 +  4147112 TAA
i caePb3.Scfld02_0      C 0 I 33
s caeJap4.Scaffold17990   344916 3 -   357190 tga
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11170210 0 + 21540570 C

a score=-272.000000
s ce10.chrX              5830468 3 + 17718866 GTT
s caeRem4.Crem_Contig0   2518866 3 -  4500979 aaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   344919 3 -   357190 gtt
i caeJap4.Scaffold17990 C 0 I 39
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e cb4.chrX              11170210 0 + 21540570 C
e caeSp111.Scaffold626    352321 21 -  1189296 I

a score=310.000000
s ce10.chrX              5830471 7 + 17718866 AACTGTA
s caeRem4.Crem_Contig0   2518869 7 -  4500979 aaatata
i caeRem4.Crem_Contig0  C 0 I 38
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e caeJap4.Scaffold17990   344922 39 -   357190 I
e cb4.chrX              11170210 0 + 21540570 C
e caeSp111.Scaffold626    352321 21 -  1189296 I

a score=0.000000
s ce10.chrX              5830478 601 + 17718866  
e caePb3.Scfld02_0       4090009  33 +  4147112 I
e caeJap4.Scaffold17990   344922  39 -   357190 I
e cb4.chrX              11170210   0 + 21540570 C
e caeSp111.Scaffold626    352321  21 -  1189296 I
e caeRem4.Crem_Contig0   2518876  38 -  4500979 I

a score=-207.000000
s ce10.chrX              5831079 45 + 17718866 TTCAGTGAAACAAATTTGGGACAATTATCCCATGATATACCATCT
s cb4.chrX              11170210 35 + 21540570 TACGAGGAAGTCACTTTGACACATTCAA----------ACAATAC
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e caeJap4.Scaffold17990   344922 39 -   357190 I
e caeSp111.Scaffold626    352321 21 -  1189296 I
e caeRem4.Crem_Contig0   2518876 38 -  4500979 I

a score=-134.000000
s ce10.chrX              5831124 6 + 17718866 TTATAA
s cb4.chrX              11170245 4 + 21540570 TTGT--
i cb4.chrX              C 0 I 1
s caeSp111.Scaffold626    352342 6 -  1189296 tcataa
i caeSp111.Scaffold626  I 21 C 0
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e caeJap4.Scaffold17990   344922 39 -   357190 I
e caeRem4.Crem_Contig0   2518876 38 -  4500979 I

a score=235.000000
s ce10.chrX              5831130 6 + 17718866 AAAATA
s caeRem4.Crem_Contig0   2518914 5 -  4500979 -aaatt
i caeRem4.Crem_Contig0  I 38 C 0
s caeSp111.Scaffold626    352348 4 -  1189296 --aata
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e caeJap4.Scaffold17990   344922 39 -   357190 I
e cb4.chrX              11170249 1 + 21540570 I

a score=-69.000000
s ce10.chrX              5831136 1 + 17718866 T
s caeRem4.Crem_Contig0   2518919 1 -  4500979 g
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    352352 1 -  1189296 t
i caeSp111.Scaffold626  C 0 I 1
s caeJap4.Scaffold17990   344961 1 -   357190 t
i caeJap4.Scaffold17990 I 39 C 0
e caePb3.Scfld02_0       4090009 33 +  4147112 I
e cb4.chrX              11170249 1 + 21540570 I

a score=231161.000000
s ce10.chrX              5831137 568 + 17718866  
s cb4.chrX              11170250 551 + 21540570  
i cb4.chrX              I 1 I 14
s caeRem4.Crem_Contig0   2518921 546 -  4500979  
i caeRem4.Crem_Contig0  I 1 I 6
s caeSp111.Scaffold626    352354 537 -  1189296  
i caeSp111.Scaffold626  I 1 I 1
s caePb3.Scfld02_0       4090042 549 +  4147112  
i caePb3.Scfld02_0      I 33 I 1
s caeJap4.Scaffold17990   344962 534 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=0.000000
s ce10.chrX              5831705 12 + 17718866 TGAGAATTTGAA
e caePb3.Scfld02_0       4090591  1 +  4147112 I
e caeJap4.Scaffold17990   345496  0 -   357190 C
e cb4.chrX              11170801 14 + 21540570 I
e caeSp111.Scaffold626    352891  1 -  1189296 I
e caeRem4.Crem_Contig0   2519467  6 -  4500979 I

a score=28819.000000
s ce10.chrX              5831717 90 + 17718866 AAAATACACTTGAAATAAAAATATTAT------TTCAGGTTCCATGATTGTTCTTCTATCAATTTTGATTTTATCTACAATTATCCTCGGTTTCAC
s cb4.chrX              11170815 80 + 21540570 aaaat----------cctgaaactttt------ttcaagttctatgATTGTTCTTCTTTCAATTCTTCTCCTGTCAACTATCATTCTTGGTTTCAC
i cb4.chrX              I 14 M 117
s caeRem4.Crem_Contig0   2519473 93 -  4500979 --AATTTACAGTTAGTTTATAATTGTTTA-TAATTCAGGTTCCATGATAGTTTTATTATCCATTCTCCTACTCTCAACTATCATTCTCGGATTTAC
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    352892 53 -  1189296 -------------------------------------------ATGATTGTTCTGCTCTCAATTTTGCTCCTTTCTACTATCATTCTCGGATTCAC
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       4090592 53 +  4147112 -------------------------------------------ATGATAGTACTTCTGTCCATTCTTCTACTTTCCACTATCATTCTTGGATTCAC
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold17990   345496 69 -   357190 ---------------------------TACTATTACTGGCTCTATGATTGTCCTCCTTTCAATTCTGGTCCTCTCCACCATCATTCTCGGCTTCAC
i caeJap4.Scaffold17990 C 0 C 0

a score=47719.000000
s ce10.chrX              5831807 89 + 17718866 GACGTTCTCCTACAAACGACAATTAAATGCTCTCAGAGACCCAGAAAGAACCCGACTCCTGTAACC--TCCACTGTCATTGACAAACGTTT
s caeRem4.Crem_Contig0   2519566 88 -  4500979 CACTTTCTCCTACAAACGACAACTCAACAATCTTCGTGATCCAGAAAGAACTCGTCTCTTATAAT---TCCGATGTCAACGACAAACTCTt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    352945 89 -  1189296 CACATTCTCCTACAAACGCCAGCTTAACAATTTACGGGACCCAGAAAGAGCCCGtcttttataatt--tttgatgtcAACGACAAACTCtt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4090645 91 +  4147112 CACATTCTCCTACAAACGTCAACTCAACAATCTTCGGGACCCAGAACGAGCACGTCTTTTGTAACTTGTCTCGTGTCAACgacaaactttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   345565 87 -   357190 CACATTCTCCTACAAACGACAACTGAACAGTCTGCGGGACCCAGAAAGAGCTCGACTGTTATAG----ACAAATGTCAACGACAAaaacct
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11170895 117 + 21540570 M

a score=257751.000000
s ce10.chrX              5831896 393 + 17718866 TATTTCTCTC----CTCTTTTATTTTTGTTATTATGGGCTCGGTT-CAAACATCTGATTGTTA-----GTGATTATGATG------ATGATAAAAAGGGTTTTT---GGGACGGTAAACGACTGTGTGTGCACAAG--TATTATTTCCTCTCAATTATGCCTAAATCGATAAGCGAGTGAGCCATATCGATAAGAGCCTCCTTGCTATCGCGCATGGTCATTCCCAGCAAACGTTGAGCCTA-AAGATAGACT---------GTGAGGGACCAATATATAATTTTAAAGTAA---------------AA----ACCTTTGAGTTATCAAACTTGACTTCTTGGCATAGACGAGGAAGACTTGCTTTTGTTTCAGGATCAAAGAGTGCATAGAGTCTCACAAAAAAGTATGGAGCTGTAAATCTGGGGATCCAGTAACCTGAAA
s cb4.chrX              11171012 386 + 21540570 tatttctc----------ttcatttttgttattATGGTGAGGGAGACGAATAATTGACTGTGTGA---GTGATTATGATG------ATGATAAAAATTGGTTGT---TTGAGGGTGACTGTATGTGTT--TGTGTGCATattattttctttcaattaTGCCTAGGTCGATCAGCGAGTGAGCCATATCGATAAGGGCCTGCTTGCTATCACGCATTGTCATTCCCAGCAGACGTTGAACCTA-AAAATATAGGCA----ATTTGTAGGGACC---ATTGAA---------AG---------------TAAGTTACCTTTGAGTTATCGAATTTGACTTCTTGGCACAGACGAGGAAGACTTGCTCTGGTCTCAGGATCGAAAATAGCATAGAGGCGGACAAAGAAATATGGGGCTGTGAATCTTGGTATCCAATATCCTGAA-
i cb4.chrX              M 117 C 0
s caeRem4.Crem_Contig0   2519654 389 -  4500979 tatttctc----------tt-atttttgttattatggGTTCGGTG-CAGACAACTGATTGTGTGA---GTGATTATGATG------ATGATAAAAA-CGTTTGT---TTGAGGGTAAATAGCTGTGTA--CATTGG--tattattttctctcaattatGCCTAGGTCGATGAGCGAGTGAGCCATATCGATAAGAGCCTCCTTGCTATCACGCATTGTCATTCCGAGCAAACGTTGAAcctagaaaatgaaaatg----aatgtgAGGGACC---ATCCGATT---AATTGG---------------AAAAATACCTTAGAGTTATCAAATTTCACTTCTTGGCAAAGACGTGGGAGGCTTGCTTTGGTTTCTGGGTCGAAAAGAGCATAGAGACGTACAAAGAAGTATGGGGCAGTAAATCGTGGAATCCAATAACCTGTAA
i caeRem4.Crem_Contig0  C 0 I 15
s caeSp111.Scaffold626    353034 381 -  1189296 tatttctctc--------tt-atttttgttattatGGGTTTGGTG-CAAACATCTGATTGTGTGTT--Gtgattatgatg------atgataaaaa-CGTTTGA---ATGAGGGTAAATGGTTGTGTG--CATTAG--tattattttctctcaattatGCCCAGGTCGATGAGTGAGTGAGCCATATCGATAAGAGCCTCTTTCCCATCTCGCATTGTCATTCCAAGGAGACGTTGaacctgaaaattatatG---------ATGAGGgact---tttcacttttgataCAG---------------------ACCTTTGAATTATCAAACTTCACTTCTTGACAGAGTCTGGGAAGACTTGCTCTGGTTTCTGCATCAAAGAGAGCATAAAGGCGTACGAAGAAGTATGGGGCTGTAAATCTGGGGATCCAGTAAcctt---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4090736 398 +  4147112 tatttctc---------------ttttgttaTTATGGGCTCGGTG-CAAACATCTGATTGTGTTGTGAGTGATTATTATG------ATGATAAAAA-TGTT-------TGAGGGTAAATGACTGTGTGTACATTAG--TattattttctctcaattatGCCCAGGTCGATGAGTGAATGAGCCATATCGATAAGAGCATCTTTGCTATCACGCATGGTCATACCAAGGAGACgttgaacctgaaaaacaaaag----------tgagggacc---agaaattttgaaaatggattgTGAAATTGAGTAAAATTACCTTGGAATTATCAAATTTGACTTCTTGGCAAAGACGTGGAAGACTTGCTTTGGTTTCTGGATCGAAAAGAGCGTAGATTCGCACAAAGAAGTAAGGAGCAGTGAATCTAGGTATCCAATAgcctgaaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   345652 399 -   357190 tcttttttttaagtatTATTTATCTTTGTTATTATGGGCGAGGGC-ATTGCATTTGAATTTGCAT---TCATTCATGGAGAGCGACACAATAAAAACTGATAGTGCGTTGAGAATGA--GAATGCGCACACAC-----TATTATTTTCGTTCAATTATGCCTAGATCGATAAGCGAGTGAGCCATATCGATAAGAGCCTCTTTGTTATCGCGCATGGTCATTCCCAGCAGTCGTTGGACCTGAATAACACAGCTGGTAAAAACTGAGGGACC------------------AG---------------GGACCAACCTTGGAGTTGTCAAACTTGACTTTGTGGCAGAGGCGTGGAAGACTTGCTTTGGTTTCTGGATCGAATATGGCGTAGAGGCGAACGAAAAAGTATGGTGCTGTGAAGAATGGAATCCAGTAtcctgaaa
i caeJap4.Scaffold17990 C 0 C 0

a score=-44241.000000
s ce10.chrX              5832289 162 + 17718866 AAGAGTAACCATGAT-----------------CGGGTGATGCGAAACATATCTCTATCTCATTATGTTCTGCAATCACCTGATTTT------TGATTTCACGCCAAAATGCGTAAAGCTTGCGAGCTGTTAAAGCAAATTTCAGGA-ATGAATAG--------TTATAAAAAACTTGAGAATTATTTTTTCAGA
s cb4.chrX              11171398 142 + 21540570 --------------------------------CGAAAAACATCAGCCCAATCT---TTTTACTTTG----------AACGTAATGA--TGTCTGTTCTTA---CAGAATAccaaaactatgaaaattgataaaacgctttttataatatcaccaattttttctgtttatagattttcaatatcattt--acaga
i cb4.chrX              C 0 I 22
s caeSp111.Scaffold626    353415  31 -  1189296 ------aattgaatt-----------------------------------------ttttattttgga--------accagaattt------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       4091134 151 +  4147112 ------aattgtatttaaaaaacaaatgcCACGAGAAAACTGTAATCGTGTGC---TTTTATTTTATT--------AGCGGAGTTTAGGGGCTGCTATTA---CAGG----TAAACTTCTGATACAAGGTG------TGCTTAGAACTTGAAGAA--------GTATCAAAACTGGTGCAAGCATAT-----GA
i caePb3.Scfld02_0      C 0 I 40
s caeJap4.Scaffold17990   346051  31 -   357190 --------------------------------------------------tgt---tttttttttt----------gtgttatttT------GGCTCTCA----------------------------------------------------------------------------------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeRem4.Crem_Contig0   2520043  15 -  4500979 I

a score=-4486.000000
s ce10.chrX              5832451 28 + 17718866 TTTCACTTCAAA--------------GTTCACTTTAACAGCT
s cb4.chrX              11171562 36 + 21540570 tttcaaatataagACTAATGTTAAATGTAAACTTTA------
i cb4.chrX              I 22 I 56
s caePb3.Scfld02_0       4091325 33 +  4147112 CTTCAACAACAA---------TAGTCGCTAACTTTCACGGTT
i caePb3.Scfld02_0      I 40 I 52
s caeJap4.Scaffold17990   346082  7 -   357190 -------------------------GGTTCAC----------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    353446  8 -  1189296 I
e caeRem4.Crem_Contig0   2520043 15 -  4500979 I

a score=0.000000
s ce10.chrX              5832479 50 + 17718866 CGTGCGCCTTATTCGAAAATGTTTCATGTAAGATATTCGTTTTAGACAAA
e caePb3.Scfld02_0       4091358 52 +  4147112 I
e caeJap4.Scaffold17990   346089  0 -   357190 C
e cb4.chrX              11171598 56 + 21540570 I
e caeSp111.Scaffold626    353446  8 -  1189296 I
e caeRem4.Crem_Contig0   2520043 15 -  4500979 I

a score=-11219.000000
s ce10.chrX              5832529 36 + 17718866 TTTCACGAGTTTAGACATATGTTTTTAACCAG-----------CCTT
s cb4.chrX              11171654 29 + 21540570 TTTCTtga---ttaacattttttcttaaCCCA---------------
i cb4.chrX              I 56 C 0
s caeRem4.Crem_Contig0   2520058 26 -  4500979 ttttttga---gagaGTTTTAGATTTA---CG---------------
i caeRem4.Crem_Contig0  I 15 C 0
s caePb3.Scfld02_0       4091410 43 +  4147112 tctagtgGCTTAAGAATATGATACTAATCGCGTGAATTGTTAT----
i caePb3.Scfld02_0      I 52 C 0
s caeJap4.Scaffold17990   346089 17 -   357190 -----------ATGAGCTTCAAGCCAAT-------------------
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    353446  8 -  1189296 I

a score=354196.000000
s ce10.chrX              5832565 602 + 17718866  
s cb4.chrX              11171683 538 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2520084 556 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    353454 542 -  1189296  
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       4091453 572 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   346106 516 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=205.000000
s ce10.chrX              5833167 1 + 17718866 A
s cb4.chrX              11172221 1 + 21540570 A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2520640 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4092025 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   346622 1 -   357190 G
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    353996 0 -  1189296 C

a score=-906.000000
s ce10.chrX              5833168 29 + 17718866 AATCTGAAATTGA----AAATGTTAAAAAAAAG
s cb4.chrX              11172222 11 + 21540570 AATCTGGAACT----------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2520641 29 -  4500979 AACCTGAAACTAA----CTAAtttactgaaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold17990   346623 32 -   357190 AATCTATAAATGAAaaccaattttaaaaaaat-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4092026  0 +  4147112 C
e caeSp111.Scaffold626    353996  0 -  1189296 C

a score=492.000000
s ce10.chrX              5833197 9 + 17718866 ACAAATTTT
s caeRem4.Crem_Contig0   2520670 9 -  4500979 aaaaatttc
i caeRem4.Crem_Contig0  C 0 I 3
e caePb3.Scfld02_0       4092026 0 +  4147112 C
e caeJap4.Scaffold17990   346655 0 -   357190 C
e cb4.chrX              11172233 0 + 21540570 C
e caeSp111.Scaffold626    353996 0 -  1189296 C

a score=-3920.000000
s ce10.chrX              5833206 352 + 17718866 AGCATTTTTCTTAATGATTCGGAAACATTGAATTTTATATTGATATGGTTTATCTGGGTACAATTTTATTACATTAATAACTGATTGTTTTCCCAATTTAATTCCCAATTTGGATAACCATGGATTAAAACTAAAAGTGTATCTAGATTATCTTTCAAAAAAAAACTTACAACTGGTCTGACTATGCAAAATAAAAGATTGATAATAACCGTCATGAAACATTTTGAGAATTTTTTTCGGTTTCATATGAATTTTTTTTTGTTTTttttttcgaaattttgatccgccataaaattgatgtaaatatttttgagaagtctctttatagaattcTGGCTTTTGGTTAATCAAA
s cb4.chrX              11172233 155 + 21540570 -----------------------AACATT-------------------------------------------------------------------TTTAATGCACAA---AGATAACAACATCT----ATTAGAAGTGCGTCATAATTGTC-----------AACTTTTAGCT---------------------------------ACTGT----------------------------TTTTAGCTAAagttttcttt------------gaaatatca---------gaaattacTGGAGACAATT---AGGAAGcacttttt----ttctggttaAGATTTCACTATA
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4092026   0 +  4147112 C
e caeJap4.Scaffold17990   346655   0 -   357190 C
e caeSp111.Scaffold626    353996   0 -  1189296 C
e caeRem4.Crem_Contig0   2520679   3 -  4500979 I

a score=-2031.000000
s ce10.chrX              5833558 8 + 17718866 GCGAATAA--
s cb4.chrX              11172388 1 + 21540570 T---------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold17990   346655 8 -   357190 --gtgcatGG
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4092026 0 +  4147112 C
e caeSp111.Scaffold626    353996 0 -  1189296 C
e caeRem4.Crem_Contig0   2520679 3 -  4500979 I

a score=610.000000
s ce10.chrX              5833566 4 + 17718866 AATC
s cb4.chrX              11172389 3 + 21540570 -ACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2520682 4 -  4500979 aagc
i caeRem4.Crem_Contig0  I 3 C 0
s caeJap4.Scaffold17990   346663 4 -   357190 AACC
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4092026 0 +  4147112 C
e caeSp111.Scaffold626    353996 0 -  1189296 C

a score=422.000000
s ce10.chrX              5833570 1 + 17718866 A
s cb4.chrX              11172392 1 + 21540570 G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2520686 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    353996 1 -  1189296 A
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold17990   346667 1 -   357190 A
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4092026 0 +  4147112 C

a score=140125.000000
s ce10.chrX              5833571 154 + 17718866 AACTTTTTGTCTTCTGGAAGTCTCTCGATAAAATCCCATGCAGCTTTTTCAGCCAACGTCTTGCTTTTGATATAACAGTCGACCATGTCACTCTCCAAGTTCGACCATGAGTCTTCATCGAACACTCGATCTTGCGTATACCCTTCTGAAAAAA
s cb4.chrX              11172393 154 + 21540570 TACTTTTTATCTTGTGGAAGTCGATCGATATAATCCCACGCTGCTTTTTCTGCCAAAGTTTTGCTTTTGATGTAACAATCCACAAGATCACTTTCGAGGTTTGACCACGATGTTTCATCAAACACGCGGTCCTGCTTGTAAccctctgaaaaat
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2520687 154 -  4500979 tactttttttcttctggaagTCTCTCAATGTAATCCCATGCCGCTTTCTCAGCCAGAGTTTTACTTTTGATGTAACAGTCGACCAAGTCGCTCTCCAAATTCGACCACGAAGTCTCATCAAAAACTCTGTCTTGCTTATACCCTTCTGAAACAA
i caeRem4.Crem_Contig0  C 0 I 39
s caeSp111.Scaffold626    353997 154 -  1189296 AACTTTTTATCCTCCGGAAGTCTCTCAATATAATCCCATGCGGCTTTTTCGGCCAATGTTTTGCTTTTGATGTAACAATCCACCAAATCACTTTCCAAATTTGACCAGGAagtttcatcaaaaactctATCTTGTTTATAACCTTCTGGAAGac
i caeSp111.Scaffold626  C 0 I 11
s caePb3.Scfld02_0       4092026 153 +  4147112 AACTTCTTATTTTCTGGTAGTCTGTCAATATAATCCCATGCAGCTTTTTCAGCAAGAGTTTTACTCTTTATGTAACAATCCACCAAATCACTTTCCAAATTAGACCAAGAAGTCTCATCAAACACTCTGTCTTGTTTGTAACCCTCT-GAAAAT
i caePb3.Scfld02_0      C 0 I 11
s caeJap4.Scaffold17990   346668 154 -   357190 TACTTCTTGTCATCTGGAAGCTCCTTGATAAAATCCCACGCGGCTTTCTCCGCAAGAGTTTTACTCTTAATATAGCTATCGACCAAATCACTTTCCAAATTCGACCACGATGTTTCATCAAACACTTTATCCTGCTTGTAGCCTTCTGAAAAAT
i caeJap4.Scaffold17990 C 0 C 0

a score=-5228.000000
s ce10.chrX              5833725 12 + 17718866 ACATCGAATTAT-----
s cb4.chrX              11172561 11 + 21540570 aatgcttttCA------
i cb4.chrX              I 14 C 0
s caeSp111.Scaffold626    354162 11 -  1189296 atttcTGATTG------
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       4092190 11 +  4147112 AAACCGTTATA------
i caePb3.Scfld02_0      I 11 C 0
s caeJap4.Scaffold17990   346822 13 -   357190 ---GCGCTTGA-ACTAT
i caeJap4.Scaffold17990 C 0 I 21
e caeRem4.Crem_Contig0   2520841 39 -  4500979 I

a score=4695.000000
s ce10.chrX              5833737 15 + 17718866 TCTGTATCAAACTCC
s cb4.chrX              11172572 12 + 21540570 ---GCATCAAACTCC
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    354173 12 -  1189296 ---ACACCAGACTTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4092201 12 +  4147112 ---GCATCAAACTCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   346835 21 -   357190 I
e caeRem4.Crem_Contig0   2520841 39 -  4500979 I

a score=1680.000000
s ce10.chrX              5833752 4 + 17718866 ACAG
s cb4.chrX              11172584 4 + 21540570 ACTG
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    354185 4 -  1189296 ACAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4092213 4 +  4147112 ACTG
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   346856 4 -   357190 ACAG
i caeJap4.Scaffold17990 I 21 C 0
e caeRem4.Crem_Contig0   2520841 39 -  4500979 I

a score=183956.000000
s ce10.chrX              5833756 228 + 17718866 ACCATTCACGGCTGCACAACTGCTAGTGAGCACAAGTTTCCTCACATTTCCATCCTCAGCAATTGCTTTCAAAACGTTCATTGTACCCTAA---------AGACGT-----TTAAAACAGTATTAAACGATCA-GAAT----------CTTGTAATCACCTCCACTGCGGTAGTAATACAACGCTCGTCTGACACAATCGGAAATGGAGAAGCTACATGTAGAACATAATCACAACCGGCGACAGCTCTGAAA
s cb4.chrX              11172588 228 + 21540570 ACCGTTTACAGCTGCACAGCTGCTCGTGAGCACAAGTTTTCGCACATTTCCATCAGCCGCGATTGCTTTCAGCACGTTCATTGTACCCTTA---------AGA-TCattctca----aagttttaaaagatCA-AAAG----------CGCGTAATTACCTCGACAGCGGTATCAATGCATTTTTCATCGGAGACAATCGGAAATGGAGAGGCGACATGGAGTACGTAATTACAACCAGCTACcgctctgaaa
i cb4.chrX              C 0 I 785
s caeRem4.Crem_Contig0   2520880 228 -  4500979 ACCATTAACAGCTGCACAACTGCTGGTAAGCACTAGTTTTCTCACATTGCCATCTTCGGCGATTGCTCTCATAACGTTCATTGTACCCTTA---------AGA-AC-----CAGAAGAAGTATTAAAATATCATTAGG----------TTTGTAATCACCTCGACGGCAGTTGTAATGCAGCGCTCATCTGAGACGATCGGAAATGGGGATGCCACATGGAGTACGTAATCACACCCCGCTActgctctgaaa
i caeRem4.Crem_Contig0  I 39 I 3
s caeSp111.Scaffold626    354189 226 -  1189296 ACCGTTAACAGCCGCACAACTGCTTGTGAGCACAAGTTTTCTCACATTGCCATCTTCAGCGATAGCTTTCAAAACGTTCATTGTACCCTTA---------AGA-GC-----ATAAAACAG-TTTGAAAGATCA-GAAG----------TTCATTATCACCTCAACAGCGGTAGTGATACAACGCTCGTCTGAGACAATCGGGAATGGAGAAGCTACATGGAGGACGTAATCACAACCGGCAACTGCTCTGAAA
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       4092217 227 +  4147112 ACCGTTGACAGCGGCACAGCTGGAAGTGAGCACAAGTTTTCTCACATTACCATCAGCCGCGATTGCCTTGAGCACGTTCATTGTACCCTTA---------AGA-GC-----ATGCGGAAGTTTTAAAAGATCA-GAAG----------TTCATAATCACCTCTACGGCGGTATTAATGCAACGCTCGTCTGAGACAATTGGGAATGGAGAAGCCACATGGAGAACGTAATCACAGCCAGCGACTACTCTGAAA
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold17990   346860 246 -   357190 ACCATTAACAGCGGCACAGCTGCTCGTGAGCACCAGTTTTTTGACATTGCCGTTTTCAGCGATCGCTCTCAAAACGTTCAATGTGCCCTGAAATTGCGAGAGG-AG-----TCAAAGAACTGTTAAAAGCGCA-CAAGAGCACGTTTTCTTTTGCTTACCTCGACGGCGGTGGTGATACACTTTTCATCTGATACTATCGGGAACGGAGAGGCCACGTGAAGCACATAATCGCAGCCGGCAATTGCACTGGAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-3533.000000
s ce10.chrX              5833984 4 + 17718866 ---GTTT
s caeRem4.Crem_Contig0   2521111 1 -  4500979 ---a---
i caeRem4.Crem_Contig0  I 3 I 1
s caeSp111.Scaffold626    354422 3 -  1189296 ---GCT-
i caeSp111.Scaffold626  I 7 I 18
s caePb3.Scfld02_0       4092445 3 +  4147112 ---GTT-
i caePb3.Scfld02_0      I 1 I 926
s caeJap4.Scaffold17990   347106 4 -   357190 ACTA---
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11172816 785 + 21540570 I

a score=1272.000000
s ce10.chrX              5833988 3 + 17718866 TTT
s caeRem4.Crem_Contig0   2521113 3 -  4500979 ttt
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    354443 3 -  1189296 TTC
i caeSp111.Scaffold626  I 18 C 0
s caeJap4.Scaffold17990   347110 3 -   357190 TTT
i caeJap4.Scaffold17990 C 0 I 42
e caePb3.Scfld02_0       4092448 926 +  4147112 I
e cb4.chrX              11172816 785 + 21540570 I

a score=-19304.000000
s ce10.chrX              5833991 233 + 17718866 TG-----------------------------------------------------GA-TTTTTTTTCTAGTAGCATAT------------AAACTTTTAAAGTAGAATATATCAATTT--------------------ATAAACCAATACT------TAGAATTTCACTA-----CC--ATTGAAGT-----------------AATT----------TTTCAAGTTTTCCCACTGACCAAATACTCAA----TGCGACCTACATTATTTTTTTCAATTTTTGCAAATGC--------------TTACGTCTATTCTCTATCATT-----CGCTGTAAAC--AACCTTTCGAAACACTGTATTTACTAAACCATTCAAACAAAA---------------
s caeRem4.Crem_Contig0   2521116 361 -  4500979 ggtgtggaaataaaaaaatcaacaaaaatacaATGTAATATCATTAGGGATCATCGA-TAAATTTCGTCTTAGCTTCCAATTTGGTTGTAAATAACTTA----ACAATACAGTAATTCACTTAGAAGCATAACTAA--GAAACTTGAGGCTTTATTATCaaatttgttcagtttttctgattgtaat-----tcaataaaaattaactaccaaaaaaatttactaCCTTAATACCG----AAAATTTAGCTCCTATCTCa-gttctacttttttcaattacttTAAATGCTAATAGAACAATTATGAATCACAgtccacatttttcaagacttgataaac--tacattttcagacaa---atg-gCTACGC------AGCAAAAGGCGAC---------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354446 296 -  1189296 TG---------------------------------------CCCTATGCTTGACCGAGTATTTTTCATCAGTGATTAC------------AGGAAATCA----AGAGTTCATTTATCTATAGATTACCGTTTTTAATGACAAGCTAAtgtttaat--tcaaaattaggCA-----CCAAAATGAGATAAAGGTCCTCAAGAGATGATT----------TTAAGGGTTCTCATAAAG----CAGATTTAG----TGAGGCa-aatgaatttgttt---ttattataacttc-----aaaaaagtttggcTGCAATTCCCCAATATT-----TTCGATGAATAGTTCGATTTCAGCTAA---ATGTACTCTAG------ACCATAAGTAGATAAATCGGAA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4092448 926 +  4147112 I
e caeJap4.Scaffold17990   347113  42 -   357190 I
e cb4.chrX              11172816 785 + 21540570 I

a score=6329.000000
s ce10.chrX              5834224 79 + 17718866 --------TCAAAATATCAAATGATTACAGTTGCTGACGTAAGCTGCAGG-TTCTGACGCACAAAGTCTAGACATTTAATTTGCACTG--------------
s caeRem4.Crem_Contig0   2521477 85 -  4500979 TCAAAAGATCAAAAGCTTAATGTA-GAAAGTTACTGACGTAG-CTGAAAC-AATTGACGCACGACCTCTAGACATACAGATTACAAGA--------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354742 86 -  1189296 --------TCAAA------AAGTA-GACCGTTATTTCCACAGATTGGTTC-GTTTGACGTAAAACTTCTAGACACACAGATTATAATGTCCGGAACTTCCTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093374 93 +  4147112 --------TCAGAGTCTTGAATTA-GACATTTACCTACGTAGACGGAAACTGACTGACGTAAAACTTCTAGACATGCAGATTATCACACCTGCAGGTTACTG
i caePb3.Scfld02_0      I 926 C 0
e caeJap4.Scaffold17990   347113 42 -   357190 I
e cb4.chrX              11172816 785 + 21540570 I

a score=-6581.000000
s ce10.chrX              5834303 33 + 17718866 ------------ACAAACAAG---------ATATCATAAAGAATTCTGCATTAA
s cb4.chrX              11173601 40 + 21540570 acaaacagagcatcaaaaagc---------aaattagaaaaaatac-----caA
i cb4.chrX              I 785 C 0
s caeRem4.Crem_Contig0   2521562 44 -  4500979 GCGGAAGGAGTTTTGATAATCTTAACCACACAATCATAAAA----------TCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354828 30 -  1189296 --------AGt-tctaaaata---------aaacaagaaagaaaa------cga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093467 28 +  4147112 --------A---Ttaaaaatc---------gagaaagaaagaaaa------cta
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   347113 42 -   357190 I

a score=48925.000000
s ce10.chrX              5834336 121 + 17718866 CTTACTTCTTCCAGCACGTTGAATCTAAAAGATCAGCTTCGACAAGCTCCAAGTGGTTCTTCTTGTCGAGTTTTTTGATTGGTTGTACC--TGTAAT------ACAATAATATTCGTTTGA-AATCAAAT
s cb4.chrX              11173641  94 + 21540570 CTTACTTTTCCCAGCAAGTATCATCCATCAAATCTGCTTCAACGAGCTCGAGAAGATTTTGCTTGGCCAACTTCTTGACAGGATCTACC--TGTAA----------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2521606  94 -  4500979 cccactttttccaacaagACGCATCTAACAAATCGGCTTCGACAAGTTCAAGAAGATTCTTCTTGTCCAGTTTTTTGACTGGTTGCACC--TGGAA----------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354858  96 -  1189296 cgTACTGTTTCCAGCATGTTTCATCCAACAAATCTGCTTCAACAAGTTCCAAGAGGTTGTGTTTGTCGAGTTTTTTGACTGGTCCAacctttgaaa----------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093495  94 +  4147112 cTTACTTTCCCCAGCAGTCTCCATCCATTAGATCAGCCTCTACAAGTTCTAAACGGCCATGTTTGTCGAGTTTCTTAACTGGTCCGACC--TGAAA----------------------------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   347155 128 -   357190 CCTACTTTTTCCAGCATAGTGGATCCAGAAGATCAGCTTCAACCAATTCTAGTAGATCCCGTTTATCCAGTTGTCGAACTGGTTGAACC--TTTAATTTGAaagtgataatttttttttggtaattaaaT
i caeJap4.Scaffold17990 I 42 I 548

a score=-10961.000000
s ce10.chrX              5834457 66 + 17718866 GTTAAAATATCGGTAATTATTTTTCAGCAATGTTTGCATACAAATTTTCAGACTTTCTACTGAACT
s cb4.chrX              11173735 12 + 21540570 -CTA-----TCGTTTGAG------------------------------------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2521700 11 -  4500979 -TT------CCGGTAATT------------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354954 12 -  1189296 -ataaaa-----ttaatg------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093589 17 +  4147112 -TTGGAAGATTGTCAACT------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   347283 548 -   357190 I

a score=88010.000000
s ce10.chrX              5834523 151 + 17718866 GCAGACAGCTTTTAATAATTTTGTAAA----ACCCACCTTGGCTTTGTTATTCAGATCACGAACAGTACCGCGGACTCTGTACCCATTTTTAAGAAGAATCTCAACACAGTGTGTTCCAATGAATCCGGATGCACCAGTCACCAAAACTTCTGAA-------
s cb4.chrX              11173747 144 + 21540570 --AGACAATTACTATTGAT-----ATG----AGGGACCTTCGCCTTGTTGTTCAGATCTCTGACAGTTCCACGAACACGATACCCATTTTGAAGCAGAACATTCACACAGTGGGTTCCAATGAATCCCGATGCTCCCGTGACGAGAACTTCTGTA-------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2521711 149 -  4500979 --AGACAATTCTGATGAGTTACAGATA----AGAAACCTTatccttgtttttcagatcacGGACGGTTCCTCGTACACGATATCCATTTTTGAGGAGTACCTCGACACAATGGGTTCCAATGAATCCTGAAGCTCCAGTGAcaagaacttctgaa-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    354966 141 -  1189296 --ggatgaaaatcaacgaa------------aaatACCTTCGCCTTATTATTCAGATCACGTACTGTTCCTCTGACACGATACccatttttgagaaggaTTTCGACGCAATGGGTTCCGATGAAACCAGAAGCTCCCGTAACAAGAACTTCTGAA-------
i caeSp111.Scaffold626  C 0 I 30
s caePb3.Scfld02_0       4093606 141 +  4147112 --TGGTATTAGCAGTTTGG------------GGTTACCTTAGCTTCGTTGTTCAAATCTCGGACAGTTCCACGGACACGATAcccatttttgaacaaaacctCAACACAATGAGTTCCAATGAATCCTGAAGCTCCAGTGACAAGAACGACTGAA-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   347831 157 -   357190 gCAGACACTCTTTGCATAA-----AAATTCTAATCACCTTtgctttgttttttaaatctcTGACGGTTCCGCGAACTTTGTAACCATTCTTCAGAAGAACCTCAACACAATGTGTTCCGATAAATCCTGAGGCACCGGTAACCAGGacttcttcaaaaaaaa
i caeJap4.Scaffold17990 I 548 C 0

a score=-6731.000000
s ce10.chrX              5834674 34 + 17718866 ATTTTGTACTGTGCCTGTTTTTGTTCAAAAATAA
s cb4.chrX              11173891 14 + 21540570 AAATGTT--------------------CGATTGA
i cb4.chrX              C 0 I 18
s caeRem4.Crem_Contig0   2521860 25 -  4500979 atttgatatgg---------ATAACAATCACTGA
i caeRem4.Crem_Contig0  C 0 I 12
s caePb3.Scfld02_0       4093747  8 +  4147112 --------------------------ACGAATAA
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold17990   347988 25 -   357190 attacgtatTA---------TTTATTACGAACCA
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    355107 30 -  1189296 I

a score=20500.000000
s ce10.chrX              5834708 28 + 17718866 -----TTAA--------CTCACTTGTCTCGTTATTGTTCAT
s cb4.chrX              11173923 28 + 21540570 -----TTCA--------CTTACTTGTCTCGTTGTTGTTCAT
i cb4.chrX              I 18 C 0
s caeRem4.Crem_Contig0   2521897 28 -  4500979 -----ATAA--------CCTACTTGTTTCATTGTTATTCAT
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    355137 28 -  1189296 -----TCAA--------CTCACTTGTTTCGTTGTTGTTCAT
i caeSp111.Scaffold626  I 30 C 0
s caePb3.Scfld02_0       4093772 36 +  4147112 -----taaataagaCTTCTTACCGGTTTCGTTGTTGTTCAT
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold17990   348013 33 -   357190 TTGTCCAAA--------CTCACTTGTTTCTTTATTCGCCAT
i caeJap4.Scaffold17990 C 0 I 778

a score=-1745.000000
s ce10.chrX              5834736 3 + 17718866 CTT
s cb4.chrX              11173951 3 + 21540570 CGT
i cb4.chrX              C 0 I 43
s caeRem4.Crem_Contig0   2521925 3 -  4500979 CAT
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    355165 2 -  1189296 AT-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093808 3 +  4147112 CCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=-10382.000000
s ce10.chrX              5834739 34 + 17718866 TCCGCCAGA-TTTCAGTGACCC----------TCGTTCCGAGCTG-----------------------------
s caeRem4.Crem_Contig0   2521933 39 -  4500979 TTTAGTAGA------ATTACCGGCAGTACCAGAAGGGCCAAGCTG-----------------------------
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    355167 66 -  1189296 ----CTaggttttctgtttttcaaccTA----ATGGACCCAAGTGAGCTGCTCTCTGTAGAATGATGAATtagg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093811 58 +  4147112 -TCGCCAGATGTTGAATTACCTGGAATAGTTTATGGAGAAAAGTGGTC----------AAACTGATG-----TG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I
e cb4.chrX              11173954 43 + 21540570 I

a score=-4561.000000
s ce10.chrX              5834773 19 + 17718866 --AAAGTTTAGT----ACAACAAAA
s cb4.chrX              11173997 21 + 21540570 -AAAGTTTCGGT---TGAAGCGAAA
i cb4.chrX              I 43 I 1
s caeRem4.Crem_Contig0   2521972 24 -  4500979 -GAAAAACCGGTgagtaaaacaaaa
i caeRem4.Crem_Contig0  C 0 I 27
s caeSp111.Scaffold626    355233 19 -  1189296 aaaaataataat---ggcaata---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093869 17 +  4147112 AAAAAGAACGAT---CACA--A---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=-1979.000000
s ce10.chrX              5834792 16 + 17718866 ---------AATATTTGTCAGTTTC
s cb4.chrX              11174019 20 + 21540570 gataattatcaaaa-----aaaatc
i cb4.chrX              I 1 I 10
s caeSp111.Scaffold626    355252 19 -  1189296 ------aatcaaaaaaatcagaatt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093886 19 +  4147112 ------AATCACAATTGTGGGGTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I
e caeRem4.Crem_Contig0   2521996 27 -  4500979 I

a score=48921.000000
s ce10.chrX              5834808 128 + 17718866 -AA-AGTTAACGACGGTAAGGACTTGTTTGCAACACTCT--TTTATACCCCCGTGTGTAAGTGCAAATTGTGATAAA------GGAATACGAAAT---AAGCATAAACAAGAATTATGATAAAAGATCACAGTGCTTTAGA
s cb4.chrX              11174049 125 + 21540570 -GA-AGAAAAGGACGAGGAGGACTTGTCAATGACA-GCT--TTTATACAT----AAGTAAGTGCATTAGGTGATAAT---CA-GAAATACGAAAC---ctacggaaacggaaattctgATAAAAGATCACTCTGCTCCAGG
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2522023 130 -  4500979 -GA-AGAAAAGCACGATGAATACTTTTCAGCGACACAGT--TTTATACATGTC-AGGTCAGtacactttttgataaa---aatgaaatacgaAAC---CAACGGAAACggaatttctgataaaatatCACTATGCTTCAGG
i caeRem4.Crem_Contig0  I 27 C 0
s caeSp111.Scaffold626    355271 139 -  1189296 ggtcaaaaaaGGACGTCTTGGACTTGTCAACGACACGGTTATATATACATGTG-GAGTaagtatattttttgataaaaggAG-GAAATACGAAAACTACGacggaaacaaaaattctgataaaaGATCACTCTGTTTCAGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4093905 131 +  4147112 GGT-GAAAAAGGACGGTGCGGACTTGTCAGCGACATGGT--TTTATACATTCC-AGATAAgtacattttctgataaa---at-gaAATACGAAACC--ctacggaaacggaaattctGATAAAAGATCACATTGCTTTCGA
i caePb3.Scfld02_0      C 0 I 59
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=-1057.000000
s ce10.chrX              5834936 7 + 17718866 AAAGA---TG
s cb4.chrX              11174174 5 + 21540570 GAAGA-----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2522153 5 -  4500979 GAAGA-----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    355410 7 -  1189296 -AAAATTG--
i caeSp111.Scaffold626  C 0 I 46
e caePb3.Scfld02_0       4094036 59 +  4147112 I
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=-820.000000
s ce10.chrX              5834943 21 + 17718866 CTGCGGTGAGGT-----AATCACTGT
s cb4.chrX              11174179 26 + 21540570 CTGTGACCACAAGGAGAAGTGACCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2522158 17 -  4500979 CTGTGACCAGAA---------CCCTT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4094036 59 +  4147112 I
e caeJap4.Scaffold17990   348046 778 -   357190 I
e caeSp111.Scaffold626    355417 46 -  1189296 I

a score=-3106.000000
s ce10.chrX              5834964 13 + 17718866 ------TACTGTTTAAAT---C
s cb4.chrX              11174205 17 + 21540570 TGTAGACAAT-TCTAATC----
i cb4.chrX              C 0 I 84
s caeRem4.Crem_Contig0   2522175 13 -  4500979 TG----CATT-TTTAGAC----
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    355463 15 -  1189296 ------CACTGCCTAAAGGTT-
i caeSp111.Scaffold626  I 46 C 0
e caePb3.Scfld02_0       4094036 59 +  4147112 I
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=-10768.000000
s ce10.chrX              5834977  79 + 17718866 --ATCAGAC---------AGCAAT----GGGTACTGATAAAACACAAAAAAT-----ACATCTGG---------AACTATGTGCGCGTCAAAAGTTGGAAAAGTGAAA
s caeRem4.Crem_Contig0   2522189  85 -  4500979 AATGTAGAC---------AGCAGTAATCCGACTATGTAACA-AACCACAATC-TGTATCAGCAATGATTTCTGCAGC--AAATCAAAACAGCAGCTAA----------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    355478  68 -  1189296 ------------------ATCAATTTTGGGGGTGAATAAGATGAAAACAAGC----------------------AGCTAACATCACGGTATAAGCCATAAAAATGCTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4094095 105 +  4147112 --AGCAAACCACAATCTTTTCAGTGTTTGGTTTGtgatagagaaaaacaagCGGCTAACATCAGGGCACAACTTAGCTAACATCACGGTGAAAGCCAT-TATGTATGA
i caePb3.Scfld02_0      I 59 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I
e cb4.chrX              11174222  84 + 21540570 I

a score=3080.000000
s ce10.chrX              5835056 53 + 17718866 CGTTGAGGT--------------------GAGAAACGAAATTGAAATTCATTTGAACATATGCGCGAAGAGGC
s cb4.chrX              11174306 48 + 21540570 CAGTGAGGT------------------GTGAAAATAGTGG--GAAATTT-----CGTGTATTCGCAGTGAggg
i cb4.chrX              I 84 C 0
s caeRem4.Crem_Contig0   2522274 64 -  4500979 CATCAAGGCTTTTGATATTTAATTGAGGTGAAAATAGTGA--GAAAAT-------ATGTATGCGCAGTgagtg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    355546 35 -  1189296 -----------------------------GATTGTGGAGA--GAAAAT-------ATGCATGCGCGATGAGGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4094200 34 +  4147112 -----------------------------AAATATCG-GA--GAAAAT-------ATGCATGCGCGATGAggg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   348046 778 -   357190 I

a score=55892.000000
s ce10.chrX              5835109 84 + 17718866 AG-AAACGCATAAGAAA---AGATTCGCCTTTCTGTG-AAAAGAGGTCATCACGGATCGATT-GTATCGGA-ATGAAGAATGGA--------AG--GAAGA
s cb4.chrX              11174354 91 + 21540570 aagaaac----aagaaa---agatGCGCCTTTCTTTG-AAAAGAGGTCATCATGGATCGATTCGTATCGGACAACAGGAATAAAGACAGTGGAG--AAGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2522338 79 -  4500979 aa-aaac----aagaaa---agatgCGCCTTTCTGTG-AAAAGAGGTCATCACGGATCGATT-GTATCGGA-AAGAGGAATAA---------AG--AATGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    355581 77 -  1189296 AA-GAAC---------A---AGATGCGCCTTTCTGTGAAAAAGAGGTCATCACGGATCGATT-GTATCGGA-GAatagaataa---------agaaaaaga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4094234 80 +  4147112 aa-gaac----aagaaa---agatGCGCCTTTCTGTGAAAAAGAGGTCATCACGGATCGATT-GTATCGGA-CGATGGAATAA---------AG--AAAGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   348824 86 -   357190 ag-aaacacacaGGATACTGAGATGCGCCTCTCCACA-AAAAGAGGTCATCTCGGATCGATT-TTATcgga-tgaagaagaag---------aa--gaaga
i caeJap4.Scaffold17990 I 778 I 1038

a score=25394.000000
s ce10.chrX              5835193 155 + 17718866 CCGTGT----CATTTTCACTGG-----CT-----------------AGTGTAGCCTCTCTAG-CA--------------AGAACATAGGTAGTATCCTTCTAGGATTCAGC---CAATGGTCTCATATCACGTGAAGGATCACT----TTTTGGCAATCCGGTT--------TTCTTAGGAACTTGTAAACGGTCACCTGAAGGTCGTATT
s cb4.chrX              11174445 179 + 21540570 ACCTGTGACGTGTTTTCACTGGTATC-CT---GTCTTATTAGTTCTGGTATAGCC--TTAAGACA--------------GAAAAACAT---TTGCATCACTTGAATTCAGT----ATGTATA-CATATCATGTGAGAGGT----GTCGTTCTTGTAATCCggtttttttcgctttttcagaACTCGTAAACGAACAGGTGAAGGACATTTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2522417 168 -  4500979 CCATGT----cgttttcactatttct-cGCTAGTCTTATTAGTTTTAGTGTAGCCAGTCAAGGCA--------------GAAACA-------TGCCTTCCTAGAAGTCAATGACGGAGTATT-TTTATCACGTGAAGGATCGACGCAATTCTGGGAATCCGGT---------TTTTTCAGAACTCGTTAAC-------TGAAGGACATTTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    355658 175 -  1189296 ccaTGT----CGTTTTCACTAGTTTT-CT--AGTCTTATTAAATCTAATGTAGCCAGTAGTCTCGTTTTTAACACCTGGAAAAAA------------------CATTCGAC---AAATGGT---ATATGACGTATAAAGTCACtggactttttgaaatccggttttt-----tatttcagaactcgttaaaaaacgaatgaagGACGTTTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4094314 184 +  4147112 CCATGA----TGTTTTCACTAGTTTCGCT--AGTCTTATTAGTTCTGGTGTAGTCATTCTAgccg-----aaaatctcaaaaaca-------ggTACCCTCTGAATTCGAC---TAAATATC-CATATCAcgtgaaaaatcaatgaactttttggaatccggttttc-----tttttggaaactcgtcaaatgaaaaatgaagggcATTTT
i caePb3.Scfld02_0      C 0 I 854
e caeJap4.Scaffold17990   348910 1038 -   357190 I

a score=246.000000
s ce10.chrX              5835348 2 + 17718866 AC
s cb4.chrX              11174624 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2522585 2 -  4500979 AG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    355833 2 -  1189296 AC
i caeSp111.Scaffold626  C 0 I 587
e caePb3.Scfld02_0       4094498 854 +  4147112 I
e caeJap4.Scaffold17990   348910 1038 -   357190 I

a score=573.000000
s ce10.chrX              5835350 2 + 17718866 GT
s cb4.chrX              11174626 2 + 21540570 GT
i cb4.chrX              C 0 I 1430
s caeRem4.Crem_Contig0   2522587 2 -  4500979 GT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4094498 854 +  4147112 I
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e caeSp111.Scaffold626    355835 587 -  1189296 I

a score=203.000000
s ce10.chrX              5835352 16 + 17718866 ATG-TAGAGGGTTTTAA
s caeRem4.Crem_Contig0   2522589 17 -  4500979 AGGATGGAGAGTGTGAA
i caeRem4.Crem_Contig0  C 0 I 865
e caePb3.Scfld02_0       4094498 854 +  4147112 I
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e cb4.chrX              11174628 1430 + 21540570 I
e caeSp111.Scaffold626    355835 587 -  1189296 I

a score=0.000000
s ce10.chrX              5835368 1681 + 17718866  
e caePb3.Scfld02_0       4094498  854 +  4147112 I
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e cb4.chrX              11174628 1430 + 21540570 I
e caeSp111.Scaffold626    355835  587 -  1189296 I
e caeRem4.Crem_Contig0   2522606  865 -  4500979 I

a score=37.000000
s ce10.chrX              5837049 4 + 17718866 ATTA
s caePb3.Scfld02_0       4095352 4 +  4147112 Atcc
i caePb3.Scfld02_0      I 854 C 0
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e cb4.chrX              11174628 1430 + 21540570 I
e caeSp111.Scaffold626    355835 587 -  1189296 I
e caeRem4.Crem_Contig0   2522606 865 -  4500979 I

a score=935.000000
s ce10.chrX              5837053 20 + 17718866 CTTTATTCACTTTATAAATC
s cb4.chrX              11176058 20 + 21540570 cttcACGTTTTTTATCTCCC
i cb4.chrX              I 1430 C 0
s caePb3.Scfld02_0       4095356 20 +  4147112 ctctattttttcaacacatc
i caePb3.Scfld02_0      C 0 I 3
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e caeSp111.Scaffold626    355835 587 -  1189296 I
e caeRem4.Crem_Contig0   2522606 865 -  4500979 I

a score=1338.000000
s ce10.chrX              5837073  7 + 17718866 CCAC---TCG
s cb4.chrX              11176078 10 + 21540570 CCACTCATCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2523471  7 -  4500979 ccAC---TCG
i caeRem4.Crem_Contig0  I 865 C 0
s caePb3.Scfld02_0       4095379  7 +  4147112 ccac---tat
i caePb3.Scfld02_0      I 3 I 4
e caeJap4.Scaffold17990   348910 1038 -   357190 I
e caeSp111.Scaffold626    355835 587 -  1189296 I

a score=9423.000000
s ce10.chrX              5837080 25 + 17718866 TTTTGATTGAACTCGTGGTAC--------GAGA
s cb4.chrX              11176088 25 + 21540570 TTTCCGTTGAACCCGTGGTAT--------TGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2523478 25 -  4500979 CTTTCGATGAACCCGTGATAC--------AGAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    356422 25 -  1189296 TCTTGATTAAACTCGTGATAC--------AAAG
i caeSp111.Scaffold626  I 587 C 0
s caePb3.Scfld02_0       4095390 33 +  4147112 ttcaaattgaactcGTGGTACGTGAGGGAAGGG
i caePb3.Scfld02_0      I 4 C 0
e caeJap4.Scaffold17990   348910 1038 -   357190 I

a score=43925.000000
s ce10.chrX              5837105  80 + 17718866 A----------------CAGCTGTCGTCCTCAT--TT-CCGAGAAAGTTTTTCT-------------------TGATGTATCAATTAAACTGAAC--AGATA-TTAGAGAACACTATCATC
s cb4.chrX              11176113 103 + 21540570 TCAACCACACACACACGCAGCTGTCACTTTTAG--TT-CCGAGAAAgttgttct--------------tcttctgatgTATTAATTAAACTAAAAAGAGATA-GTAGAGAACACTATCATC
i cb4.chrX              C 0 I 23
s caeRem4.Crem_Contig0   2523503  81 -  4500979 G---------------ACAGCTGTCACTTTGAT--TT-CCGAGAAAATTTTGCT-------------------AGATGTATCAATTAAACTGAAC--AGATA-TTGAAGAACACTATCATT
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626    356447  81 -  1189296 T----------------CAGTTGTCTTTCTCAG--ttcttagaaaaaaaattct-------------------tgatgTATCAATTAAACTGAAC--AGATA-TTAGAGAACACTATCAAT
i caeSp111.Scaffold626  C 0 I 8
s caePb3.Scfld02_0       4095423  80 +  4147112 G----------------CAGctgtcattttcaa--tttccgagaaaatttttca-------------------tgaagtATC-ATTAAACTGAAC--AGATA-TTATAGAACACTATCAAC
i caePb3.Scfld02_0      C 0 I 15
s caeJap4.Scaffold17990   349948 100 -   357190 ----------------ACAACTGTCTCTCGTAGATTT-CcgagaaagtttttttttctattttttccttcCTTTGTGGTGTCAATTAAACTGAAC--AGATACTTTAAGAACGCAATCA--
i caeJap4.Scaffold17990 I 1038 C 0

a score=-3608.000000
s ce10.chrX              5837185 15 + 17718866 ACCACAGAAATTGTC-
s caeRem4.Crem_Contig0   2523596  9 -  4500979 GATACAGAC-------
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    356536 15 -  1189296 ACTAGAGATTCCGTT-
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       4095518 15 +  4147112 ACAAAAGATGTGATT-
i caePb3.Scfld02_0      I 15 C 0
s caeJap4.Scaffold17990   350048 16 -   357190 ATTAATTGTGTGGCGC
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11176216 23 + 21540570 I

a score=-8669.000000
s ce10.chrX              5837200  89 + 17718866 AATTTGATTGGCGCAGTTGTTTCAAAAGAACTACTCATTGCA--------------------------------TTTGATATAACTTAAT-CGAACCGGTATGCA---TGTGATGTGTTACAACA--
s cb4.chrX              11176239 113 + 21540570 aaaagaggaggtgGAAGTGT-TTAAAAAGAACCGCCACACAC----------TTTTAAACGTAAGTCATTTGTCTTCATTATCACCTAATAGGAACCGGTAtgccttttttgaattgttacAGC---
i cb4.chrX              I 23 C 0
s caeRem4.Crem_Contig0   2523605 106 -  4500979 GATTTGATAGTTGTAGTTGCATCGAAAAAAGACGCCACTCCT----------T-----ACGTAAGTCTCTTGTTTCTATTATCACCTAAT-GGAACCGGTATGAA---GATGAATTATTACAGCA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    356551  90 -  1189296 -----------------GTT-TCGAGTGAACCCCCTATTGCT----------TGATTCATGTAAGTCACTT---TCTATTATCATTGAAC-CAAACCGGTATGCA---TTTGAGTTGTTACAACA--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4095533  92 +  4147112 -----------------TGT-T--AGTTTCTTTCTCGTTTCCACACAAGAAATTATTCGCCTTAGTCAC--------ATTTTCACT-AAT-CGAACCGGTATGTT---ACCTAATTGTTACAGCA--
i caePb3.Scfld02_0      C 0 I 440
s caeJap4.Scaffold17990   350064  75 -   357190 ----CGATTGATTCATCCAA-TTGAAAGAAACAGCTGCGTAA---------------------AGTCA------------ATCACCTAAT-TAAACCGGTAT-------------TGTTGCAAAGAA
i caeJap4.Scaffold17990 C 0 C 0

a score=-384.000000
s ce10.chrX              5837289 2 + 17718866 -AT
s cb4.chrX              11176352 2 + 21540570 -AT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2523711 2 -  4500979 -AT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    356641 2 -  1189296 -AT
i caeSp111.Scaffold626  C 0 I 15
s caeJap4.Scaffold17990   350139 2 -   357190 AA-
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I

a score=-1055.000000
s ce10.chrX              5837291  8 + 17718866 GTTG-----ATGA
s cb4.chrX              11176354 13 + 21540570 TTTGTAACCACTA
i cb4.chrX              C 0 I 3
s caeRem4.Crem_Contig0   2523713 13 -  4500979 GAGGAAACTATTA
i caeRem4.Crem_Contig0  C 0 I 3
s caeJap4.Scaffold17990   350141  8 -   357190 -----GACAACGA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeSp111.Scaffold626    356643 15 -  1189296 I

a score=-723.000000
s ce10.chrX              5837299 6 + 17718866 ATCGTT
s cb4.chrX              11176370 3 + 21540570 ATT---
i cb4.chrX              I 3 C 0
s caeRem4.Crem_Contig0   2523729 6 -  4500979 AGTATT
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    356658 6 -  1189296 ACTGCC
i caeSp111.Scaffold626  I 15 C 0
s caeJap4.Scaffold17990   350149 6 -   357190 ATCATT
i caeJap4.Scaffold17990 C 0 I 174
e caePb3.Scfld02_0       4095625 440 +  4147112 I

a score=7643.000000
s ce10.chrX              5837305 48 + 17718866 ATCAAATAGTCGGTAATCTTTTATGT-----------TTCCTTTGTTTTAGTTTAAATT
s cb4.chrX              11176373 43 + 21540570 -----GTTATCGGTAATCTCTTTTCT----taacatctttttttcttatgtt-------
i cb4.chrX              C 0 I 275
s caeRem4.Crem_Contig0   2523735 57 -  4500979 ATCAAGTTATCggtaatcttttttct--tctcacattttcttttgttataGTTCCAATT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    356664 53 -  1189296 ATCAAATTGTCggtaatcttttttcatgttttaccattctttttgtcatggtt------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeJap4.Scaffold17990   350155 174 -   357190 I

a score=302.000000
s ce10.chrX              5837353 2 + 17718866 TT
s caeRem4.Crem_Contig0   2523792 2 -  4500979 CT
i caeRem4.Crem_Contig0  C 0 I 323
s caeSp111.Scaffold626    356717 2 -  1189296 tt
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeJap4.Scaffold17990   350155 174 -   357190 I
e cb4.chrX              11176416 275 + 21540570 I

a score=91.000000
s ce10.chrX              5837355 1 + 17718866 A
s caeSp111.Scaffold626    356719 1 -  1189296 a
i caeSp111.Scaffold626  C 0 I 227
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeJap4.Scaffold17990   350155 174 -   357190 I
e cb4.chrX              11176416 275 + 21540570 I
e caeRem4.Crem_Contig0   2523794 323 -  4500979 I

a score=0.000000
s ce10.chrX              5837356 655 + 17718866  
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeJap4.Scaffold17990   350155 174 -   357190 I
e cb4.chrX              11176416 275 + 21540570 I
e caeSp111.Scaffold626    356720 227 -  1189296 I
e caeRem4.Crem_Contig0   2523794 323 -  4500979 I

a score=626.000000
s ce10.chrX              5838011 38 + 17718866 TTTTTTTTTCTCATTTCCAAACTGTTTTTATCGGTTTT-----
s caeJap4.Scaffold17990   350329 43 -   357190 tcctcttttcttccttcctacgtgaattttctggttttgaaaa
i caeJap4.Scaffold17990 I 174 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e cb4.chrX              11176416 275 + 21540570 I
e caeSp111.Scaffold626    356720 227 -  1189296 I
e caeRem4.Crem_Contig0   2523794 323 -  4500979 I

a score=1025.000000
s ce10.chrX              5838049 8 + 17718866 ATGTACAA
s cb4.chrX              11176691 8 + 21540570 ATGTTAAG
i cb4.chrX              I 275 C 0
s caeJap4.Scaffold17990   350372 8 -   357190 atgtgaag
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeSp111.Scaffold626    356720 227 -  1189296 I
e caeRem4.Crem_Contig0   2523794 323 -  4500979 I

a score=-1659.000000
s ce10.chrX              5838057 30 + 17718866 TTTATTGACATGCATTTATTTCAAAGCTT-----------A
s cb4.chrX              11176699 41 + 21540570 TCATTTAATTTTCATTTACTTCATAGTTTCATACAAAATAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2524117 26 -  4500979 --------------ttta-ttaACAACTATGTACGGGGtga
i caeRem4.Crem_Contig0  I 323 C 0
s caeJap4.Scaffold17990   350380 30 -   357190 tttatttatttattttcatgtaagacttt-----------a
i caeJap4.Scaffold17990 C 0 I 14
e caePb3.Scfld02_0       4095625 440 +  4147112 I
e caeSp111.Scaffold626    356720 227 -  1189296 I

a score=1765.000000
s ce10.chrX              5838087 17 + 17718866 ATTAATCCAATAATTTG
s cb4.chrX              11176740 17 + 21540570 GTTAGATGAGTTTTCTC
i cb4.chrX              C 0 I 5
s caeRem4.Crem_Contig0   2524143 17 -  4500979 attaacaaaaaattctt
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    356947 17 -  1189296 atttattcaatatGTCA
i caeSp111.Scaffold626  I 227 C 0
s caeJap4.Scaffold17990   350424 17 -   357190 attaattaaatagttat
i caeJap4.Scaffold17990 I 14 C 0
e caePb3.Scfld02_0       4095625 440 +  4147112 I

a score=240396.000000
s ce10.chrX              5838104 576 + 17718866  
s cb4.chrX              11176762 577 + 21540570  
i cb4.chrX              I 5 I 12
s caeRem4.Crem_Contig0   2524164 527 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    356964 537 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4096065 533 +  4147112  
i caePb3.Scfld02_0      I 440 C 0
s caeJap4.Scaffold17990   350441 542 -   357190  
i caeJap4.Scaffold17990 C 0 C 0

a score=-3789.000000
s ce10.chrX              5838680 40 + 17718866 TGGATGGCACTTAtttcggacaattctacaaaatggtata
s caeRem4.Crem_Contig0   2524691  7 -  4500979 ------------------------------GACAGGT---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    357501 12 -  1189296 ----------------------------TAAAAAGGTGTA
i caeSp111.Scaffold626  C 0 I 9
s caeJap4.Scaffold17990   350983  5 -   357190 -----------------------------------GTATA
i caeJap4.Scaffold17990 C 0 C 0
e caePb3.Scfld02_0       4096598  0 +  4147112 C
e cb4.chrX              11177339 12 + 21540570 I

a score=-9188.000000
s ce10.chrX              5838720 82 + 17718866 atgcggcatgattttctaacatttttcattacgttaatgtcaaaatatagaaaatcatttgatcaaccttaaaatcacacct
s caeRem4.Crem_Contig0   2524698  7 -  4500979 ---------------------------------------------------------TTTGATC------------------
i caeRem4.Crem_Contig0  C 0 I 19
s caePb3.Scfld02_0       4096598 27 +  4147112 --------------------------------------gtcGAAACTTAGG-----CTTTGATT----------TTATAC--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   350988 19 -   357190 ----------------------------------------------------ATTAATTTCATC--------aataata---
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11177339 12 + 21540570 I
e caeSp111.Scaffold626    357513  9 -  1189296 I

a score=-55.000000
s ce10.chrX              5838802 38 + 17718866 attttatttgacctgttt--gaaaaatgctcaaaaatggc
s caeJap4.Scaffold17990   351007 31 -   357190 -------ttaattttcacgaGAGAAA--CTCAAAATCagc
i caeJap4.Scaffold17990 C 0 I 86
e caePb3.Scfld02_0       4096625  0 +  4147112 C
e cb4.chrX              11177339 12 + 21540570 I
e caeSp111.Scaffold626    357513  9 -  1189296 I
e caeRem4.Crem_Contig0   2524705 19 -  4500979 I

a score=-3466.000000
s ce10.chrX              5838840 131 + 17718866 ctgaaattgccgattgtcgtatgccgaattgccgagattcatttagcagctaccaggccattgttgagcacattctcgaTATTTTTTTTTAATTGCAAAAAATAAGTGTCGCCCAGATCCGCCTGACTCCT
s caePb3.Scfld02_0       4096625   8 +  4147112 ------------------------------------------------------------TTGTTGAA---------------------------------------------------------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold17990   351038  86 -   357190 I
e cb4.chrX              11177339  12 + 21540570 I
e caeSp111.Scaffold626    357513   9 -  1189296 I
e caeRem4.Crem_Contig0   2524705  19 -  4500979 I

a score=23.000000
s ce10.chrX              5838971 6 + 17718866 GATCCG
s caeJap4.Scaffold17990   351124 6 -   357190 GATAAA
i caeJap4.Scaffold17990 I 86 C 0
e caePb3.Scfld02_0       4096633 0 +  4147112 C
e cb4.chrX              11177339 12 + 21540570 I
e caeSp111.Scaffold626    357513 9 -  1189296 I
e caeRem4.Crem_Contig0   2524705 19 -  4500979 I

a score=910.000000
s ce10.chrX              5838977 1 + 17718866 T
s cb4.chrX              11177351 1 + 21540570 T
i cb4.chrX              I 12 C 0
s caeRem4.Crem_Contig0   2524724 1 -  4500979 T
i caeRem4.Crem_Contig0  I 19 C 0
s caePb3.Scfld02_0       4096633 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   351130 1 -   357190 T
i caeJap4.Scaffold17990 C 0 C 0
e caeSp111.Scaffold626    357513 9 -  1189296 I

a score=74901.000000
s ce10.chrX              5838978 94 + 17718866 ACCATAAAAAGTATATATGGAATCAATAAATCTTCTTTTTCCGTGATGAATGCAAGTATCATACAAATGATCGATACAAGCTGCCAAACCTGAA
s cb4.chrX              11177352 94 + 21540570 ACCATGAACAGAATGAACGGAATCAATAAATCctctttttcagtcaaaaatgaaattatcatGCAAATAATTGAGACTAGTTGCCAGAtctgaa
i cb4.chrX              C 0 I 20
s caeRem4.Crem_Contig0   2524725 94 -  4500979 ACCATGAATAGAATGAATGGAATCAAtagctcttctttttcagtgatGAACGATAGAGTCATGCAGATGATTGACACCAGCTGCCAGATCTGTA
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626    357522 94 -  1189296 ACcatgaaaagaatgaatggaattagtaagtcttctttttcagtgaaaaatgcTATTATCATGCAGATAATAGACACCAGTTGCCACATCTGAA
i caeSp111.Scaffold626  I 9 I 2
s caePb3.Scfld02_0       4096634 94 +  4147112 ACCATGAATAGGATGAATGGAATCAACAAGTCCTccttttcagtgaaaaatgcgAGAGTCATTCCAATAATTGAGATTAGTTGCCAgagctgaa
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold17990   351131 94 -   357190 ACCATGAAAAGAATAAATGGTATAAGCAAATGTTCCCTCTCGCCGATAAAGGAGAGAATCATGAAAATGATCGAAATGAGTTGATAcaactgaa
i caeJap4.Scaffold17990 C 0 C 0

a score=-5558.000000
s ce10.chrX              5839072 20 + 17718866 ---CAGAAATAATGATATACATA----------
s caeRem4.Crem_Contig0   2524829  4 -  4500979 ---Taga--------------------------
i caeRem4.Crem_Contig0  I 10 I 7
s caeSp111.Scaffold626    357618  6 -  1189296 ---TAcaag------------------------
i caeSp111.Scaffold626  I 2 C 0
s caePb3.Scfld02_0       4096730  6 +  4147112 ---caaaaa------------------------
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold17990   351225 19 -   357190 atttaaaaa--------------tttctgcttt
i caeJap4.Scaffold17990 C 0 C 0
e cb4.chrX              11177446 20 + 21540570 I

a score=85405.000000
s ce10.chrX              5839092 154 + 17718866 --TTGTTTTGTTT-----CCACTATTAAAATTGCAAACCGAAATTATTGCTTGTCCTGCGTCTGCAGTCTCTCCCACTCGGTCAACGAAAATGTAAAAATACCATTCCGTAAGCTCGATAAAAGCCATGAAAGCTATGACTAATGCTAGAGCAACCTGAAA
s cb4.chrX              11177466 147 + 21540570 --tattttatttt-----ttgatttt------gcttACTGAAAGAATAGCTTGTCCAGCATCTGCATCCTCTCCTGCATGTCcaacaaaaatgtagaaatacCATTCAGTAAGCTCTATGAATCCCAGGAAGAAGATAATAATTGCAAGGGCGACCTGAA-
i cb4.chrX              I 20 C 0
s caeRem4.Crem_Contig0   2524840 145 -  4500979 --ttttttacttt-----tctgtT---------CTTACTGATAGGATTGCTTGTCCAGCATCTGCCGACTCTCCGGCACGgtctacaaaaatgtaaacgTACCATTCTGTTAGTTCGAGGAATCCaaggaagaaaatgatgatggccAGAGCAACCTGAAA
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    357624 152 -  1189296 --ttgttttttct-----ttagtttGAAGA--ACTTACCGAAAGAATAGCTTGTCCAGCATCTGTTGATTCTCCAGCTCGATCCACAAAAATGTAGAGATACCATTCCGTTAGTTCAATGAATCCTAAAAAGACGATGATGAGGGCCAATGCCACCTGAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4096736 157 +  4147112 --tttattgagttACAAGTAGGATAGAACA--GCTCACAGATAAAATTGCTTGTCCAGCATCTGCGGACTCTCCAGCTCTGTCCACAAAAATGTAGAAGTACCATTCTGTCAACTCGATAAATCCgaggaagaggatgatgaGAGCGAGAGCAACCTagaa
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold17990   351244 154 -   357190 cttttcttttttc-----cccctttgcttt--tcATACCGAAAGAACCGCTTGCCCTGCATCTGTAGCCTCACCGGCTTGATCTACAAATATGTAAAAATACCATTCCGTTATCTCGACGATTGACAAAAATGCAATAATGAACGCGAGAGCAACCTGTAA
i caeJap4.Scaffold17990 C 0 N 0

a score=-60468.000000
s ce10.chrX             5839246 166 + 17718866 A------------------------TTTAAATTT--GTTCCACAGT-------------GT-----------TAGTTCTCGCTATCGATTTTATTGA--TTTTTAAACCATTGCTTGATTA--ATTCTGCTATTTACATTTCTTATCAGTTCTATTCC------------TTTTG--------------------TTTATT-------ATAAGAACTGACCGTCAAT-----ATTTTGATACTGAAATTAAATTACTTCAATAA----------------------------------------------
s cb4.chrX             11177613 261 + 21540570 ---------CATTGATAAAGGCTTATTTCGCTTTACGATCTTTCGA-----AAACAC---------------TAtattttcaatagaaaaatattca--aatttaattttgaatttaatacTAACCTTATCCATTATAGTTATGATAACTCGTTTTACACCATAAAGTTTTTATCCCAAAAGGGTCactacaattttttcaactttgaacttgTGCTCATACTTGTG--CTCAttttttttACATAATTTATCAAcagtctcaaatt---------------ttttgactgattACGATTT-CGCAATAA
i cb4.chrX             C 0 I 39
s caeRem4.Crem_Contig0  2524985 218 -  4500979 tcctgtttttgtttttta----ttatttacatttatgttcttcaaa-----aaacaccAATGAGTAGTGTCATACGCTATTTGTTGGATGATACTGA--ATTTTGAACCTTCGCTCTGTAC--ACCGTGTCGTTGACAAAACTTATCATTCATTTTAC------------TGCttccaaaa--------------ttttcg-------------gttGATAGTGG-------ATCGTTATTTCGCAATCTGACTAGGAATTtgagt--------------------------------ttt-cataaaaa
i caeRem4.Crem_Contig0 C 0 C 0
s caeSp111.Scaffold626   357776 200 -  1189296 TA-------CAT----------TTATTAAATTTT--GGTGTTCGGA-----AAACTGGAAT-------------TTCTTGTATTTTGAC----TTGCACATTCCGTTTCTGTCATTGAAAA--ACgttatc---------------aactttttttca-------------gttg--------------------ttgcTG-------------ATTGATGGAAAGTAATGCATCAAGATTTCGCAA------TAATTCTAAAAGTTCCAAGTTTCAATAATATTTGCATCATCTAATTCCACTTTATTa
i caeSp111.Scaffold626 C 0 C 0
s caePb3.Scfld02_0      4096893 196 +  4147112 t------------------------ttggaattt--ggaatttgaattttgaacctTTGAT-----------CGTTTTTACATTTCGATGACAGtacttatcttttttcttcatttatgaa--actct--------------------ctttttctca----taatctttttctg--------------------tttttg-------------attgatattAGAT------TAGAAATTTCGCAATgtgattggttttttcactCCCAG-----------ACACACATCAtctaatttt-cattatta
i caePb3.Scfld02_0     C 0 C 0

a score=-475.000000
s ce10.chrX             5839412 27 + 17718866 TGATTCTAAA-------GAAAA---ATTTTCTATAGT
s caeRem4.Crem_Contig0  2525203 27 -  4500979 ---acgtaca-------tatgatatattttcaaGGAG
i caeRem4.Crem_Contig0 C 0 I 7
s caeSp111.Scaffold626   357976 36 -  1189296 -ggtttttcagtttgatgaaaactcatttccAAAGAT
i caeSp111.Scaffold626 C 0 C 0
s caePb3.Scfld02_0      4097089 29 +  4147112 -GGTTTCTGA-------GAAAACGCATTTCCCAGAAT
i caePb3.Scfld02_0     C 0 C 0
e cb4.chrX             11177874 39 + 21540570 I

a score=-62539.000000
s ce10.chrX             5839439 112 + 17718866 ------------------------------TTTATACTAAATTTGAGAAATTAA--------------GTTTTTTTGATC----TTCAGACACATCCAGTTACCAGTTTGCAAACTAACGCAACAGCTTGAGTGTGA----------------------------------------GCTTTC-------------------------------------ACACCC----------------------------------------------------ATAA-------------------AACTTTC
s cb4.chrX             11177913 263 + 21540570 TCTT-----TAATCAATTTAGGCCAGTAGCTTTCCA--TTGCCcccaaaatttaatttcagcttttttatgCTATTGGTT----TTTGTCTGAGTGCTGCTGGC-------AAACCAATGAAACGAGGC---TTTGGTG-------------------GTATAGTTGGC--CGGGTACTTTTC---TCAAGGCACTTCTCAAGTGTACTCCTTCCCTCTCAAAGTAATATCCCCTTTTCCCCAGGATGAAGGTCCCCGCATGATGGAAGGTCCTATGAATAAATAGGGCGCCCCGGCGCACGCCGCTC
i cb4.chrX             I 39 C 0
s caeRem4.Crem_Contig0  2525237 202 -  4500979 TTcc-----taattaattt---ttcttggttttcta--gacgcttgaaaattca----------tttcattctaTCCGTCTACGTTTTTCAGTGTGCAG----------------TAATAAAACTAGGCGGTGTCGGTGGTTCTCAGGCTTTTCTCAAGTGTACTTTTCTACGAATACGCCCCGAATGAAAGGGCAACTTAAATG---------------AAAGCA------------------------------------------------ATGAATAAATAGG-------GGCGCACACTTCTC
i caeRem4.Crem_Contig0 I 7 C 0
s caeSp111.Scaffold626   358012 168 -  1189296 ---TCCGGAGGGTTTGTTC---CGAGAAGTGCAATA--AAGCTAAATGAAATTG--------------ATGTTTCCTATG----CCCTCAAGTGTACTTTCGCCAC-----CAAGTAATATCTCTAGATGA-AATGCAGAt-------------ccaaatgaaatattc--tcatttttcttg-------------------------------------agaata------------------------------------------------A---ATAGATCTGGGTCTC-----CCCGCATTTC
i caeSp111.Scaffold626 C 0 C 0
s caePb3.Scfld02_0      4097118 128 +  4147112 ---T-----GGTTTCACTT---GTCGTA--GCAATA--AAACCACACGAAATTG--------------ATGTTTCCCGTA------CTCAAGAGTACTTTTCCTTCT----CGAGTTCTATCCTTAGGCGAGAATGGAGG-------------------------------------CTCTCC-------------------------------------AAAATA------------------------------------------------AT--ATAG-----------------CCAGAGGTC
i caePb3.Scfld02_0     C 0 C 0

a score=155606.000000
s ce10.chrX              5839551 320 + 17718866 T---------------AGTTACCTTCACATGGAGCCTTGAGCAGCAAGTGAAAAATCGCGGATTCGACGTCTCTAGAGTGAATAATCCAGACCTCGTTATAGCCATTCTTTTCGTCAGACTTTGCCGGCTAGAACTATAGAGCAATAGCGATGGGAGTGAATTGAGAGTGAGCAT-TTGCTC-----TCCAT-----------------GATAATA-TTCTTATCATCAAC----AGCTCCGGCGTTTTCATCCATTATTACTTGA----ACATTAATGCCAACAAAG--------CA-CGCTGAATAATTGACATTGTGATAACCGTGCGTGTCTATCAAATTTGAATACAAAGACA---AAAAAA-------TCAATGGTTTGA
s cb4.chrX              11178176 335 + 21540570 CTTCTTCCCCTCCACACTTTACCTTCACATGAAGCCTGGCACAGCAAGTGAAAAATCGCGGATTTGACGTCTCCAGAGTGAATAATCCAGACCTCGTTATTGCCATTCTTTTCGGCAGTTTTCTATGGTTGGAAGTATAGAGCAGAAACGAGGGGAGTGAGCTGAGAGTAAGCAT-TCACTC------TCCTCGCTTACTCTCCCCATA--------CTGTTATCAATGAT----AACCT-------------GACTGTTAGCTCAGCACACGTTATTGTC----AGG--------CACC-----ATGTACAACA-AATGATAACTTCACGTGTCAATCTTACTTGAATAGGAA-AATGGGGAAGAATTTTTTGTGAGAGTCTTGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2525439 332 -  4500979 T---------------CGTTACCTTCACATGAAGCCTTGCACAGCAAGTGAAAAATCGCGGATTTGACGTCTCCAAAGTGAATAATCCAGACCTCGTTATGGCCATTTTCTTCGGCAGTCGTCTATGGTTAGAACTATAGAGCAAAAACGAAGGGAGTGAGTTGAGAGTGAGCAT-TCTCTCCGCTCTCCCTCTCTCACTCGCCTTTTAGATAATATTTGTTATCAACGATTCAGAATCT-------------CAGTTTCTGCTAGTCCAACAGTATTGTC----AGG--------CA-C-----ACAAACGCCG-CATGATAGGAGCGTGTGTCtatcaaatttgaattgaaagaataggaaaaaa------gtcAATGACTTGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    358180 309 -  1189296 T---------------CGTTACCTTCACATGAAGCCTTGCGCAGCAAGTGAAAAATCGTGGATTCGACGTCTCCAAAGTGAATAATCCCGACCTCGTTATTGCCATTTTCTTCGGCAGCCGTCTATGGTTAGAACTATAGAGCAAAAACGATGGGAGTGAATTGAGAATGAGCAT-ttactc-----tttct-----tctcactcTGTTGATAATA-TCGTTATCAACTCT----CACAT-------TTTGATGGCTGTCAGCTCA----ATAATAATGTA----CGG--------CA-C-----AAAA---GCG-GCTGATAATGTTTTCTGTCAATTAAAtttgaataggaaaaaaaataaaaca-------t------ttcgT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4097246 327 +  4147112 C---------------CGTTACCTTCACATGAAGCCTTGCACAGCAAGTGAAGAATCGCGGATTTGACGTCTCCAAAGTGAATAATCCAGCCCTCGTTATTGCCATTCTTTTTGGCAGTCGTCTATGGTTAGAACTATAGAGGAAAAACGTAGGGAGTGAGTTGAGAGTGAGCATATTCTTC-----TTTCTCGTCCTCTCACTC----GATACTA-TCCTTATCAATCTA----CATTT-------TGCGTCGGCTGTTAGCTCA----ACAATATTGTC----AGGTACACACTCA-C-----AAAAAGTGTA-AGTGATAAACGTTTATGTCGATCAAATTTGAATGGAGagaatagcaaaaaa-------tcaatg-ttggA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137     6360 296 -   658288 T---------------ATTTACCTTGACATGAAGTTTTGCACAACAGGTGAAAAATCGTGGATTCGACGTCTCCAAAGTAAATAAGCCAGACCTTGTTATGACCA---TATTGGGTAGAGCTCTGTAGTTGAAACTGTAGAGCAAAAAGGGAGGGAGTGAATTGAGAGTGAgcat-tttgaa-----tttca-----------------gaTAACG-TTGCTATCAGTTAC----TTTCT-------------ACCCGTTATTTAATTGTGCATTAGTTGC----CAA--------CA-A-----AGCCTAGTCAAAGGGAAAACTGTTTATGTCTTTCAAACTGGGGTGaaaaaaaTGG------A-------TCGATGGTTAGA
i caeJap4.Scaffold18137 N 0 I 2273

a score=9608.000000
s ce10.chrX              5839871 61 + 17718866 ACGAAACAGGCC-----GTTTTTGTGCGCCTGATTGA--------GATCATTGTTTAAAAAAAGTATGCTGATA
s cb4.chrX              11178511 62 + 21540570 GTTAAACATGCCATT--ATAAT-------CTAATCGCTCTATCAAAGTCACTGTCTG--AAAC-TGTGCCGATA
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2525771 57 -  4500979 GTGAAACAGGCCATCAAATAAT-------CTAATCGC--------ATTCATTGCCAA--AAAAGCGTGCTGATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    358489 52 -  1189296 CTGAAACATGCC-----ATTTT-------TTCCTTGC--------Tgtctttgtttc--aaaatcataTTGACA
i caeSp111.Scaffold626  C 0 I 37
s caePb3.Scfld02_0       4097573 53 +  4147112 ATGAAACAGCCC-----ATAAC-------CTAATCGC--------TAtcattgtttt-aaaaatcatGCTGATA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137     6656 2273 -   658288 I

a score=1684.000000
s ce10.chrX              5839932 36 + 17718866 TGATTTTGTTCAGTTTGAAACCCCAT--------------TGATTTCTCA
s cb4.chrX              11178575 45 + 21540570 TGTTTTTCCttgctttaaaaaaacac-----aCGGCGCCATGAGTTTTCA
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2525828 44 -  4500979 CGTTTCAGTTTGCTTTAAAAAGGCAC----TATGATAT--TGAATTTAGA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4097626 42 +  4147112 TGTGTTTGTTCCCTTTAAAAAGGCACACATAGTGACAT--TGAA------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e caeSp111.Scaffold626    358541 37 -  1189296 I

a score=-2811.000000
s ce10.chrX              5839968 47 + 17718866 ----------TTTTTATATTTCCCCTGTGTTTTATGTGACTCTC---ATCATGTGACTCT
s cb4.chrX              11178620 43 + 21540570 TTGTTCTAGTTTTATCTTCTTT--------------TTACAATT---GTcatgtgaattt
i cb4.chrX              C 0 I 1381
s caeRem4.Crem_Contig0   2525872 39 -  4500979 CTCATCAGGCTTTTATTTCTGG--------------TCACGTTC---ACCC----AATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    358578 36 -  1189296 ----------TTTTCATACTAC--------------TCAAGCCTCTGATCACGTGAGTTT
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       4097668 38 +  4147112 ----------TTTCCATACCATCA---------GTATCATGTCT---ATCATGTGAGTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137     6656 2273 -   658288 I

a score=-618.000000
s ce10.chrX              5840015 7 + 17718866 ----GAATTTC
s caeRem4.Crem_Contig0   2525911 7 -  4500979 GAAACAG----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    358614 7 -  1189296 ----TAGTTTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4097706 7 +  4147112 ----CAGTTCC
i caePb3.Scfld02_0      C 0 I 5664
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I

a score=-11384.000000
s ce10.chrX              5840022 218 + 17718866 -CAAGTGAGGAGGAAAAAAGTTGAAACTGAAAAAGTTCAAAAATATCATCATACCATAACATTTACATTTTTCATAATG-----CATGTTCTCTGTGCTGTAAATTTTGTTTAAAAAATTCTTTTATTTTT---------AACACTTGTATACCATAATTGTTTTGTATTATGTTTTGATAAG----GATTGTTTATT------CAGAACATAAGAAAA------TACAAAATTAA------AAAAGCGAATGAA
s caeRem4.Crem_Contig0   2525918 191 -  4500979 -TAAGTGTGTAtaagaatcaaaaattcagaatatat---AAAACCACgcagaaaaattgaactaaatattgaaataatt--------------tgtGATGTAAGATT--------CTGGGCTTCCCTTTTTCCAATCATAAA--------------------CTAGGATTGTTAT-TCTCAGA----CAGATATAATCCCTGTGCAGTGACTAAATATAGGAACGCCCTAATCTCG-------------AATGAA
i caeRem4.Crem_Contig0  C 0 I 225
s caeSp111.Scaffold626    358621 214 -  1189296 GGGAGTGTGACcgcttttcatttctcatgactatgt-------------------------ttcagtttttataaaattgtTTCGAAGCCTAACATCAAGGAAGATT--------AAATTTCTTCCTTGTTATAGAACTAAATAGTTTTATCTGGTATGTGCTTTGGATTTAAATGTTTCAAGGCTTCATTTTTAATC------CAACAACTAAGAACA--CACTTCCTAGACTAGTATtatatcagaaaatgaa
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I

a score=-3263.000000
s ce10.chrX              5840240 200 + 17718866 --------------AAAGCGAAA--------------------------AAAAAACCATATTTTTGCTAATAAAT--------------------TTGCTCGCCCCCTCCGCCTTG-----------GATTACTTTGACAGTT----TTC--------TTCCCAATTCTT---------------------------------------TTTGGTTTTATC------------TAGAAACAGTCAACTGACAAAATACGT---GCAAAA-----TTTTCATCTACATTTTAATAG------TTAAATTTGTTTGATGAAACACGGAGGAACAATTGATTCAATCTCTT
s caeSp111.Scaffold626    358835 348 -  1189296 gcgAACCACCTCACAGAGCGTAGTTAATCTGATTCTACGTCTGCACTTCGAGAAACTTAATCTTGTCCAGTACATGCAGGAAATTCATAGAACCATTATTTCCACCTGCTCCCGTAATGCATCGGCAGATGAATATACTAGTTGAGGTTCGAGACTAATTTCTAATTCCTACGTAAGCGgtgagaaaaattaatgattCTAGGAgatattttgtatttttcattaagCATGTTTGGAGagattgatttcagaaaactagtTATGCAAAACGTATTCcacatatttattttgacaGCGATTTTTGAACTCTCTCGAAAAATATCAGACATAGACTGAATTGAATTTATT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I
e caeRem4.Crem_Contig0   2526109 225 -  4500979 I

a score=-4476.000000
s ce10.chrX              5840440 48 + 17718866 ATTCCATTTAA--TTTTTAATGTTTTTTTAACATGCAATTTAGGAGCCCA-------------------------
s caeRem4.Crem_Contig0   2526334 72 -  4500979 Aatccattttctatttttagtactctttttcaat---ctttacgaaacaagaaattcaatttctagAGAAGTCCA
i caeRem4.Crem_Contig0  I 225 I 44
s caeSp111.Scaffold626    359183 41 -  1189296 AATCTCTGAAC-------GGTAATCTAGTCAga-------aatgaatcgaaaaac--------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I

a score=253.000000
s ce10.chrX              5840488 12 + 17718866 GCTTTAACCTAT
s caeSp111.Scaffold626    359224  6 -  1189296 ------atctat
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I
e caeRem4.Crem_Contig0   2526406 44 -  4500979 I

a score=-4328.000000
s ce10.chrX              5840500 72 + 17718866 CTAGAATTTTT---------TCAACGTG-------------CATTATCTAATCAGCAAATCATTTTTAATGTATTAAA----ACCTCACTTAACAGTA--
s caeRem4.Crem_Contig0   2526450 86 -  4500979 ccaaatttgtttttgcttGCCATACGCTGAATATTATACTAAAATATTCAAgtataag---ttttcaaaactagtCAACTTGAC---------TGGCA--
i caeRem4.Crem_Contig0  I 44 C 0
s caeSp111.Scaffold626    359230 72 -  1189296 ccagaattttt---------caaac----------------aaatctctagaaaacaa---agttctaaaccaaaaaattaggCATCCAGTTATGCCATC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I
e cb4.chrX              11178663 1381 + 21540570 I

a score=-889.000000
s ce10.chrX              5840572 27 + 17718866 AAAAAAACTAGCACGTGCGACATTACT----------
s cb4.chrX              11180044 17 + 21540570 aaaaaaaCTGGCA----------AAGT----------
i cb4.chrX              I 1381 C 0
s caeRem4.Crem_Contig0   2526536 25 -  4500979 ACAAAAACTGGCACATGGGGC--AAGT----------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359302 27 -  1189296 Gataaaatcttca----------aaatcacAACTAGA
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4097713 5664 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I

a score=7874.000000
s ce10.chrX              5840599 137 + 17718866 CTGAA-----------AATGATTACTCGTACTTGC--GCTCAAATATTTGCACAGCTTGCACTATCCCCCGTACACTATGAACTGCGC----GGT-----------TGCTTTTCTTACT---------TAGTC--TGAACAAAGGAAACTTTTT-----------------CATT-TTGTATGATTC--------------------------GAATTAG------
s cb4.chrX              11180061 133 + 21540570 CTGGAATGGTGGAGGGAGGGTTTACTCGTTCTCTCTTGCGCAAATATTTGC-------GATCTAT--CGTGCACAAATTGTATAGCTC----CGTGAGCG------TACtttttttACTACCAGT---CAACCTTTGAACGAA---------------------------------TCGTACGGT--------------------------------------TTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2526561 156 -  4500979 CTGGA-----------AACGTTTACTCGTTTTTAC--GTTCTAATATTTGCACAGTTTGCACTGT--CTCGCACACATTGTACAGCTC----TCT---CC------TACTTTTTT-----CCAATGTGTAACCTTTGAACGAGAAGGTGCAT-------------------CTGTCTCCTGTAATAC--------------CACTTTGC----TGATTTTGTATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359329 142 -  1189296 CTGGA-----------AACGTTTACTCGTTCTTAC--GATCTAATATTTGCACAGTTTGCGCTGT--CTCGTACACATTGTACTGCTC----TTG---CG------tgcttttttcacttttag----cAACCTTTGAACGATAAagatctt-------------------cttt-ttgtacTGTAc--------------------------taatgaa------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4103377 187 +  4147112 CTGGA-----------AGAGTTTACTCGTTCCTAC--GCTCTAATATTTGCTTAGTGTGCACAG---CTCGCACACATTGTACCGCTCTCATTTA---CGtttttttACCTTCCGC-------------AACCTTTGAACGATGAGGATACTCTTCTTAGGACCACGATGGCTGA-TTGTCTGGCATGCGTCCTTGACATACACTTTTTACGATAATTAG------
i caePb3.Scfld02_0      I 5664 I 80
e caeJap4.Scaffold18137     6656 2273 -   658288 I

a score=-9437.000000
s ce10.chrX              5840736 65 + 17718866 ------CGAATTAGTCAT-----------------------------------CTCTAGCTTGA---AGCGTTCCGTTCTAAACCTTTGAACTGACTTTAAACGCTGGC
s cb4.chrX              11180194 52 + 21540570 ------TAAATGTATGAT-----------------------------------TTTATGATTCATTGAGTCGTTGGGCCCAAAAAAGGGCATT----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2526717 91 -  4500979 ------TCAATTTATAATACCTATTTTGAAGTAGAGTTTTTGAGGGAAATGCATCCAtgttttatttagtttttagtttcaaGTGTGTAACTT------------TGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359471 66 -  1189296 tgaaaatcatTCTGTAGT--------------------TCCGTAGAAAA----AGCATGATCTAATTAGGGT---GTTTGAAGTGTGTAAATG----------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4103564 80 +  4147112 I
e caeJap4.Scaffold18137     6656 2273 -   658288 I

a score=1048.000000
s ce10.chrX              5840801 16 + 17718866 ACGTCGTCTTTGTCTA
s cb4.chrX              11180246 16 + 21540570 GTGTTTTCTTAGTCTA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2526808 16 -  4500979 GAtttccctttcttca
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359537 13 -  1189296 ---TCCATTCAATCTA
i caeSp111.Scaffold626  C 0 I 11
s caeJap4.Scaffold18137     8929 16 -   658288 acgtcagcGTCGTCTC
i caeJap4.Scaffold18137 I 2273 C 0
e caePb3.Scfld02_0       4103564 80 +  4147112 I

a score=27875.000000
s ce10.chrX              5840817 349 + 17718866 TCCTTCTTTTAGG-TTTTTCTTTGCATTTGC-----AAAAACGTT----GCACTCTTGGTTTG--------CAAACGCTTCC--CTTCATCTCG------------ACCCCGCACTTTTTTACTTTCCTCTGCATTT---------CTGTTTCATCCACGTCCTTC---TTTTTTCCTATGTTTCTC--ACGACCTTTTAC-ATTCCAACAACTGATTCGAATTCT---------TTTTAGCCTCCCGTCTCGCAATT------TTTCTCTCC---CACCTCTTCTC--------TTGG-TTTTTTCAT----TTCCTCCCACGTCCTT---------------TTTTCTGTACCTCTCTCTGTAGGCAGTTTTATCGACAGTTGTGATCT-TGGGCAAAGGGCAT-----------------------CGACACGCG----GAGGGCACACAGACGC---ACGCAA--GCACAA
s cb4.chrX              11180262 384 + 21540570 TCCTTCCTCGGC--TTTCTTTTT--------GCAACAAGAGAGG-----ACACTTTTGGTTTG--------CAAACGCTTTG---TGTCGTCCG------------CAGTCAC-TCTTCATACTTTCTTCTGCACTCATCCACTT-------------C--TCCTC---GTCTTCTACTT-CCACCCGACCtttttttCAC-ATTCCAACAACTGATTCGAATTCTACCCCCTCGCATCGtcact-----tttaaatt------tttctctca---tttctctaCCCATCtccaattca-tttttccat----tgccTCCCACGTCCTTTCACTCGCTACTTTCTGTTTTTCGTCTCGTA----GGGCAGTTTTATCGCCAACTGTGATCT-TGGCCAAAGGGCATATCGGTTGGGGAGAGAGGGGTGGTAGAGCGAG----AGAGACGCTCCAACGC---ACGCACT-TTCAGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2526824 348 -  4500979 tccttctttggttgtttcttttttcttttgcgtTGCAAGAGTGAT----GCACTTTTAGTTTG--------CAAACGtttcgc-ccttctttcg------------accccac-tcttcttactttcttttgcttttttcccccttctatttcatctac--tactc---ttcttctGTGTATCATCC--CCGTCCTTTTAC-ATTCCAACAAGTGATTCGAATTCT-----------TCGACACC---------AA--------ttcctctcg---tttctcttcctgtctc---ttca-ttttttcat----ttcctcccacgtcctc-----------------tttttctcttcata-----gGCAGTTTTATCGACAGTTGTGATCT-TGGGCAAAGGGCATCGC----------------------AAGCGCG----GAAGGCACACACACGC---ACGTAC--TCAAAG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359561 331 -  1189296 tttctcttc-----ttattttctgcATTTGCA----AAGAGTACT----GCACT-------TG--------CAAActtttccgacccttttc-----------------cccc-tttttttact---ttttgtttct---------ctttttcatcgac--tcttctcttttttcttcatgtttctc--ccgcccttttAC-ATTCCAACAACTGATTCGAATTCT---------TTTCGTTCCC---------AATC------TATCTA------CTTCTCTTcctt-------tcggtttttttcat----ttcctcccACATCCTT----ACCCCCCTTCtgtttctctgtttctct----aGGCAG-TTTATCGACAGTTGTGATCT-TGGGCAAAGGGCAT-----------------------CTACGCGCG----GGAGACACATACACAC---ACGCACTATTagac
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       4103644 356 +  4147112 tccttcttca----gttttctttgcATTTGC-----AAGAATGCT----GCACTTTTGGTCTG--------CAAACCCTTTCCGCCTTCTTTCG------------ACGCCGC-GTTTCTTactttcttttgctttt---------cagTGTCATccgc--tcttc----ttttttcaatgtttctatgTCGTCCTTTCAC-ATTCCAACAActgattcgaatttt---------ttttagttct---------catCTGCCAATATCTATCCcatcttcatttccttctcccggtcggttttttttctgtcattccTCCCAcgt-------------ccttttttttctctaattctct-----------ttcATCG-TAGATTTGATCTCTGGGGAAAGGGCATCTC-----------------TTGCTGCGCGC-------AGTTGCAAACCGACCCGACGTAC--CCAGAC
i caePb3.Scfld02_0      I 80 C 0
s caeJap4.Scaffold18137     8945 324 -   658288 TTCATCGCTAGAG-GGCAATTTTGCAGTTGC-----AAACTTATTCTTCGCATTCTTCTTGTGGCATTTCtcgaataatttgaattttttcgcgccaGGTCAGGTCGCGtcgc-tattttt--ttcttttcaatttt---------cttcctcccacgt--ctttc---attccttccttcttcctt--ccatcctttAGCTGTCTTATCGACAGTTGTgatctct----------------ccc-------------------tctctctctg--tttctctctcc--------ttca-tctttt-------tttctctc------------------------tttctttctttctcc----tgccatcttt-------------ttct-cGGGCAAAGGGTAACGT----------------------ACGTGAGGACAGACGACACATGCATAC---ACTCAC--TA----
i caeJap4.Scaffold18137 C 0 I 60

a score=-4571.000000
s ce10.chrX              5841166 68 + 17718866 AGACGAAGAAG------------ACCTCTCTATTTACTCTCTTTCTCT----CGGTTCTCTGCTC---------------------------TTTCTGCCATCTTTTGTTT
s cb4.chrX              11180646 96 + 21540570 AGACAAAAAGA------------CCTTGCCGATGTACTCTTTTCCGTCG---TCTATCTATTCTTGCGGAGCGTTGTGTGTGTGCCCCGCGACATACCCCGTCTTTACTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2527172 72 -  4500979 AGACAAAGAGA------------CCTTCCCGATGTACTCTTTCGCgttactctttttcttttctt--------------------------ctataCTCTCTTATTCTCT-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359892 84 -  1189296 aaagagagagagggtgAGCGAGGCCTTACTTTTGCACTCTTCCATttatctctgcgtctctgtat---------------------------cgtattctctcttttgttc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4104000 73 +  4147112 AAA---AGCGA-------CGCGGGGTCGCATTTGCACTTTATTCTCCCGCCCTGCGTCGCAgtct----------------------------attttctctcttcttttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137     9269 60 -   658288 I

a score=-5133.000000
s ce10.chrX              5841234 266 + 17718866 C------ATCGTCTCG------CCTTGCCAACTCACA---GTG-GTCGA----CGCGCTCAATTGCGAATTCGGGTGTGTAGCGACTCAAACGGCC----------------GGCGTGATACGTA---GTCAGCAG--CTCTTGTTACATCATCGAAACTTATCAAATGACGCATT---TTTATCGCACATGTTATATCAT-ATGTCAGA-AAGCTACAAAAAAGACAGGC-----------AGAC-----------------------------CTCAATTTTTTGTTCT---TTTAT--------CCATATC-TTTCTGACAATTT-GTGCTTTTGT------GAA-----GGGTAAATGCTTATTC-----------TGATCGT
s cb4.chrX              11180742 307 + 21540570 T---------------------AAATGCCAACTGGCG---GGGTGTTGCAATGTACGCTCCATTGCGAAATTCGCTGCGTAGCGACTCAACGCACGCTTTACGTTCGATACAGCAGCGATGTGCACACACGCGCAC--TGTGTGTTACATCATTCAGACTTATCAAGTGACGCATT------------------ATACTAC-GCAACACACGACccagagaagagaaaaga-----gatagaCTAC------ACTAAAGCATCTATCATCTACccagcaattttttgatct---tttatATATATGTCcgttttgtttctcaatatga-CTGCTTATGT------GAA-----GGGTAATTAAATGGCA---------TTTGATCGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2527244 259 -  4500979 -------------------------TGCCAACTGGCG---ATA-GTTCC----TGCGCTCCATAGCGAATTGC-CTACACAGCGACTCGGGTCGTG----------------GCCACGATACGTA---GCGAGCAT--CTCTTGTTACATCATTAGAACTTATCAAATGACGTATT---TTTATC---------ATGTGtc-acaacaca------aaaaaagtggCATGC-----Aatataaaac------acaaaa-----------------agtcaatttttgacca---tttaT-----------CTTTTGTCATGACTATTA-TCGCTTCTGT------GAC-----GGGTAATTCAGTGGTATATAAATGTTTTGATCGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    359976 276 -  1189296 ACGTTTCCCCCTCCCG------TGTTGCCAACTGGCC---ATG-GTGGT----CGCGCTCTGATGACAATTTGCCTGCGTAGCGACTCGACAAACG----------------GTCGCGATACGTA---GGGTGGAG--CTCTTGTTACATCATGGAGACTTATCAAGTGACGCG--------------------GTTTTATAGTGAcaaagaaatcagagaacAGAAACATACAAATTTATATATC------ATTCGAA----------------TATCATTTGTTGATCT---TTTAT--------CCTTTTCGTTTCTGACTATGT-CTGCTTTTCT------CAA-----GGgtaattttctattc-----------tgatCGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4104073 274 +  4147112 a--------tcttgCG------TACTGCGAAT--GCC---A-G-TTGGC----AGCGCGCTG-----TATtcg-ctgcgtagcgactcgACCGCCG----------------TTTGCGATACGTa---gtttaatattttttttttacatcacGAGCATATACAAAATGACGTGTT------------------ATGTAATGGTGACTA--ACATCACAgatcatctctct-----tttttatgaCTGCTCAACTGGGA----------------AATTCTTCGTTTGTCCA--TTTAT--------CCTTTTGCACTGTgcatatat-atttatttatataAGACAATGGCTGGGTAATTATATATTA-----------TAATCGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137     9329 288 -   658288 ------CGCCGCCCCGCCGTCCAATTGCCAAGTGGCCTCTGCA-GTAGC----AGCGCTCTATAGCAAATTCTGCTGCTTAGCGACTCGACGGAAT----------------GT-GTGATACGCA---GTCTGCGC-CCCCCTCTTACATCATTGAAACTTATCAAATGACGCGCtttttttATCTCAAACATTACATCAC-ATGGTGGTAGTGTCAGAAAACACGTGAAG-----ATAAGCGAAC-----------------------------tttaccgttttcatacaattttat--------cgatttt-ttgatgattttttaatgcatttaa------aaa-----tgagaaaccTCAATCC------------GCATGT
i caeJap4.Scaffold18137 I 60 I 15

a score=-6454.000000
s ce10.chrX              5841500 32 + 17718866 TGTGAATTGTCGTTCTGA--------TTTTCAAATCTCTT
s cb4.chrX              11181049 34 + 21540570 TGTGTGTTGTGAATCTCAGTGTTGGCATGCAAAT------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2527503 24 -  4500979 GATGTTCTgtgaa-------------atacaaattt---t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    360252 27 -  1189296 TGTGCTTTGTACT-------------TTATGATTTGTGCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4104347 32 +  4147112 TGTGCTTGGCCatcccaa--------ttattttttttcat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137     9617 15 -   658288 I

a score=99717.000000
s ce10.chrX              5841532 412 + 17718866 ACAATTCAAACTATT------ATGTTTCAGGGTACCCCGG-----AAGTCAATAAATCTTATGGCTGATCCAAATTGGGCAT---ATGCACCCCCAACAAATTATTATGCAGGTAA-----------TTTTTTTGAAAACATACT----TTTGCa-ttaataatttaattaaataatgtattcaacaaaa-tataa------aacaattta---aatcaatttataaaaaaattttCAGACCATTCAATAGCAAAGCCGATTATGATATCCGGCGGCCACCCATCTCAAGATCAGGGCCATTCACCGAAGTCGGAATCATTCGGACAATCAGTTACTACTGCTTTTAATGGAATGGTTGATAATCTTGTCGGTTCCCCATCTTCGTCTGT---TCAACAACGAAACTATGTGAGTTTTT---------TCCTCGGAAAAATATAAAA----GCTAAAAATCCAAATTA
s cb4.chrX              11181083 387 + 21540570 --AAGTATAATAATG-AGATAATTTTGCAGGGTACCACGG-----GAGTCTAAATACAAAATGGCTGATCCAAATTGGGCATATCATCCACCAGCCACAACTTATTATGCGGGTAAA----------TATCATTAC-------TC----GTGGGA---AAAATTCTTCTTTC---------------CAT-TGTTA------TCTTATCAAAttaactaattttttctct---ttgcagATCATTCTATTGCAAAACCAATCATGATTGGAGGCGTACAGCAGTCACAAGAATCCGGACATTCACCAAAATCAGAATCGTTTGGAGTTTCAGC---CAGTGCGTTCAATGGAATGGTCGATAATTTGGTCGGATCACCATCAAACTCCCTCCCTCAACAAAGGAATTACGTGAGTTTTTATT------GCT----TGAAA-----------AGTGAGAGTTTGGATTA
i cb4.chrX              C 0 I 64
s caeRem4.Crem_Contig0   2527527 428 -  4500979 tgaactagaaaaatataaaaaatgtttcagggTACCCCGG-----AAGTCAAAATTACATATGGCTGATCCAAATTGGTCGT---ATCCGCCCCCTGCATATGCATTTGCTGGTAag----------tcttcttat-------tttttagtttaa---aaaattttaacattaa------tgaaaaatat-tgttaaaaaaccgtttttcaacaaaaaaatcattaaactA--TTGCAGACCATTCCATAGCAAAGCCTATAATGATAGGGGGCGTTCAACCGTCTCAAGATCAAGGACATTCACCAAAATCTGATTCTTTTGGCCAATCCGT---TACTGCTTTTAATGGAATGGTTGATAATCTAGTTGGATCACCATCTTCCTCCCTCCCTCCCCAGAGGAAttatgtaagtttttattcaactagtttttgtgaaaatcaaattgagagagaaagttATTGTTA
i caeRem4.Crem_Contig0  C 0 I 12
s caeSp111.Scaffold626    360279 396 -  1189296 Ttggataaaaaattt--gaaaatgtttcagggTACAACAAA----AAGACATAAAAGCCTATGAGTG------ACTGGTCTTATCAGCCTGCAACCACAACATATTATGCAGGTgag----------tcttttttcaaatat-tt----gtgAAA-CGGATTGTTTGCTTTCGGACc---attaaaaaat-cataa------atgtttt-----------ttttc--------attcagaccATTCCATAGCAAAGCCTATAATGATAGGGGGTGTCCAACCCTCTCCAGACCAAGGACATTCGCCGAAATCAGAGTCGTTTGGACAATCTGT---GACGGCTTTCAATGGAATGGTCGATAATCTCGTTGGATCTCCATCTTCGTCGGT---TCAACAAAGGAATTATGTAAGTATTT---------Gactttttaaacaaaaaaatatgggagagaattgaaaaac
i caeSp111.Scaffold626  C 0 I 7
s caePb3.Scfld02_0       4104379 409 +  4147112 caaaacaaaaa-------aaactgttgcaGGGTACACCGAATATTAAGG-ATAAAATCGTATGGCAGATCCCAACTGGGCGTATCATCCCACTGCTACGCCATACTATGCGggtgagtgttttttgttttttttttcaaca--ct----gtgaaatcaaaaaaattgatttctgattG--AACAGAATAT-TGtaa------tattcttca---aaacaattttc--------ttccagatcaTTCTATAGCAAAACCTATTATGATAGCGGGCGTCCAACCCGCGCAGGACCAGGGACACTCGCCGAAATCTGAATCTTTTGGGCAATCAGT---GACAGCTTTTAATGGAATGGTTGATAATCTTGTTGGGTCACCTTCTTCATCATT---ACAACAGAGGAATTATGTGAGTATTT-------------------ACGATTGAAAACGGTCGTTCGTTAAGACTA
i caePb3.Scfld02_0      C 0 I 2
s caeJap4.Scaffold18137     9632 351 -   658288 ataaacgCAAATATT-AAATATTCTTCCAGGGTCCCCCAA-----CGTCAAAAACGTCCCATGGCTGATCCAAATTGGACTTTTCATCCTCCA---ACGTCGTATTATGCAGGTAAC----------TGTTT-----------AT----TTAGCA-------------------------TAGAAAATACATATAA------T------------------------------ATTCAGATCACTCAATCGCAAAACCGATTCTCATTGGAGGCGTCCAGAACAATTCGGATCAGGGACACTCGCCAAAATCCGAATCGTTCGGACAATCGGT---GACGGCGTTCACCGGAATGGTTGACAATCTTGTTGGATCGCCCGGCTCGACTAC---TCAGC---GCAATTATGTgggttatt---------taattttttaaatgacgaT----ATTGGAAATGCGCTTTA
i caeJap4.Scaffold18137 I 15 C 0

a score=-4512.000000
s ce10.chrX              5841944 16 + 17718866 TTCGATTTACTTTGCC
s caeRem4.Crem_Contig0   2527967 12 -  4500979 CGTAACATAGTT----
i caeRem4.Crem_Contig0  I 12 C 0
s caeSp111.Scaffold626    360682 16 -  1189296 TACAACGCGTTGTGCG
i caeSp111.Scaffold626  I 7 I 72
s caePb3.Scfld02_0       4104790 13 +  4147112 ---GGCTTGTTCTACG
i caePb3.Scfld02_0      I 2 I 21
s caeJap4.Scaffold18137     9983  5 -   658288 ------ATGCc-----
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11181470 64 + 21540570 I

a score=-5901.000000
s ce10.chrX              5841960 39 + 17718866 GTCTGTTTTGGCAGTAATTATCGATTTTCCCCCGCACAC
s caeRem4.Crem_Contig0   2527979 35 -  4500979 GCGCGTgtt----gcaatttttgacatgCGCTCAGTTTC
i caeRem4.Crem_Contig0  C 0 I 32
s caePb3.Scfld02_0       4104824 28 +  4147112 GC-CACTTT----ACACTTATTGA------TTCAACGTT
i caePb3.Scfld02_0      I 21 I 10
s caeJap4.Scaffold18137     9988 19 -   658288 ------------aaatgtttttgaatttcga--------
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11181470 64 + 21540570 I
e caeSp111.Scaffold626    360698 72 -  1189296 I

a score=0.000000
s ce10.chrX              5841999 20 + 17718866 TTTGTGTGAGGCGGGATAGG
e caePb3.Scfld02_0       4104852 10 +  4147112 I
e caeJap4.Scaffold18137    10007  0 -   658288 C
e cb4.chrX              11181470 64 + 21540570 I
e caeSp111.Scaffold626    360698 72 -  1189296 I
e caeRem4.Crem_Contig0   2528014 32 -  4500979 I

a score=747190.000000
s ce10.chrX              5842019 1615 + 17718866  
s cb4.chrX              11181534 1469 + 21540570  
i cb4.chrX              I 64 I 4
s caeRem4.Crem_Contig0   2528046 1597 -  4500979  
i caeRem4.Crem_Contig0  I 32 I 4
s caeSp111.Scaffold626    360770 1708 -  1189296  
i caeSp111.Scaffold626  I 72 I 5
s caePb3.Scfld02_0       4104862 1535 +  4147112  
i caePb3.Scfld02_0      I 10 I 25
s caeJap4.Scaffold18137    10007 1611 -   658288  
i caeJap4.Scaffold18137 C 0 C 0

a score=-5584.000000
s ce10.chrX              5843634 24 + 17718866 AACATGATCTCGTTTCTCA-----TCTTT
s cb4.chrX              11183007 24 + 21540570 GAAACTAGATGAAGACTCA-----GGTTT
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2529647 24 -  4500979 GAAACGAGAGCAAAActta-----gtttt
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    362483 21 -  1189296 GAAGTTATCTAAAAGAT-------GCTT-
i caeSp111.Scaffold626  I 5 C 0
s caeJap4.Scaffold18137    11618 26 -   658288 --tgcggtttttagtttcaacaatattt-
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4106397 25 +  4147112 I

a score=461050.000000
s ce10.chrX              5843658 570 + 17718866  
s cb4.chrX              11183031 561 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2529671 562 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    362504 563 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4106422 562 +  4147112  
i caePb3.Scfld02_0      I 25 C 0
s caeJap4.Scaffold18137    11644 573 -   658288  
i caeJap4.Scaffold18137 C 0 I 1495

a score=-1270.000000
s ce10.chrX              5844228 31 + 17718866 CATCCGTGACATTTTGAAGAAAC-TCACCGAG--
s cb4.chrX              11183592 31 + 21540570 CCTCAAAAAGTGT---ATCCAACTTCTCACCAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2530233 33 -  4500979 catcaaaatttatttgatgGAAC-TCTCACTGAT
i caeRem4.Crem_Contig0  C 0 I 91
s caeSp111.Scaffold626    363067 31 -  1189296 CATCCGCGACTGTATAAAGAAAG-TCTCACAC--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4106984 31 +  4147112 CATCCGCGATTGTATGAAGAAGA-TTACCCAT--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I

a score=552.000000
s ce10.chrX              5844259 89 + 17718866 TCGGAAATTGAGCCCATGCGA--TGCGAATTTCTTGAGTTGCTCGAATGCTTGGAGGA------TATGGAAAA--CATACTGAAAAAATGACCAA-ATAG
s cb4.chrX              11183623 93 + 21540570 TCTGAACGTGCCACAATGCAG--CGTGAATTTATGTACCTACTCAATTACTTGGACGA--GAATGAAGACAACGACA-ACTAAGGATGTGTGGAA-CAG-
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    363098 87 -  1189296 AACGACCTGGGACTACTGAAA--TGCGAATTTATTGCTTTACTCGAGTGTTTGGAGGA------CATGACATC--CG-ACTGCTGATTTTCTTCA-CTC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107015 94 +  4147112 ACGGAGATTGG--CATCGAACGTTGCGAGTTTGTCGCTTTGCTTGAATGCTTGGAGGATTGTGCCATGACGAA--TG-ACTACTGAGTTGCATCACCTC-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I
e caeRem4.Crem_Contig0   2530266 91 -  4500979 I

a score=11077.000000
s ce10.chrX              5844348 57 + 17718866 TTCAAACTTACCCTCGTT-----T-TTGTGCTTTGCTTTT----TTACA-CTTACCAATTATTTTCTC
s cb4.chrX              11183716 67 + 21540570 -CTCAGCTTACCCTCATTTTTAATGTCGTGTTTTTTGCTTCTCACAACCACTCACCTTTTATCGTTCC
i cb4.chrX              C 0 I 55
s caeRem4.Crem_Contig0   2530357 64 -  4500979 ccTATTCTTACCCATGTTT----TGTTGTGCTTTCGCTTTATTTTCACCACTCAcaatttatcatttt
i caeRem4.Crem_Contig0  I 91 I 1
s caeSp111.Scaffold626    363185 62 -  1189296 TTCAAACTTACCCTTGTT-----TGTTGTGCTTTGCTTTTTATTTCACT-CTCACcgttttaattttc
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107109 61 +  4147112 CTGAAACTTACCTTTGTT-----TGTCATTCTACGC-TTTGATTTCACC-CTTACATATTATTATTTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I

a score=-16858.000000
s ce10.chrX              5844405  36 + 17718866 ------------------------------------------TTCGACTTCATCACTAGCACCCACCAGGATTGGACA--------------------------------
s caeRem4.Crem_Contig0   2530422  43 -  4500979 -----tt---------gGACC-----------------CCGATTTGGATCTCCCGCACT-----ATCAAGAAGTGTGAA-------------------------------
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    363247 105 -  1189296 aacGAGTGCCTTCGCaggatcaaaaaataatttttctctcaagtTTGTTGTGTTGTGTG-----ATTATTGCCGTTCACTCTCAGTTATATTTTAACAGATACCTCAACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107170  76 +  4147112 AACGAAT---------GGATCAA----------CCCGGCTGAACCGAACCCGTCAGAAG-----AGCAGagtcattcaa----------aatttatccGTTTATAAAAAG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I
e cb4.chrX              11183783  55 + 21540570 I

a score=-28.000000
s ce10.chrX              5844441 5 + 17718866 TCAAC
s cb4.chrX              11183838 5 + 21540570 TCAAT
i cb4.chrX              I 55 C 0
s caeRem4.Crem_Contig0   2530465 5 -  4500979 GAAAC
i caeRem4.Crem_Contig0  C 0 I 62
s caeSp111.Scaffold626    363352 5 -  1189296 TCCAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107246 5 +  4147112 TTTGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I

a score=-6767.000000
s ce10.chrX              5844446 29 + 17718866 --------------------TGGATTAATTTATGTTTAAAG----AACTTATG------------
s cb4.chrX              11183843 52 + 21540570 TCAGTTCAATAATCAATTCATCGCCAATTTGA-------------ACAACAAGCAATCCATCATC
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold626    363357 20 -  1189296 --------------------TGCCCCATGTGA-------------AACAAAAG------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107251 33 +  4147112 --------------------TGTGTTGTgtgattttttgcagttcacCCTAAG------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I
e caeRem4.Crem_Contig0   2530470 62 -  4500979 I

a score=-2073.000000
s ce10.chrX              5844475 112 + 17718866 --------------------------------------GACATCTTACCCAATAATCTA-CCTATCG----CCTACTCCGT------------------------TATATCCACC------------CGCAC--CAGCATGCTCACACCTTA--CCTATTTTCTTTGAACTGTTGTGAGAGTGTTAGTTGTTTTA
s cb4.chrX              11183902 124 + 21540570 --------------------------------------ATCGTTTTATCATTTACCCTA-CCTCCCA----TCAACCCAAT----------TGCAATACAATATAAATTATTATC------------CGCACTTGTGCATGATCACATTTTTATCCTGTTTTC------TTTGTGTGAAATTGTTAGTTTTGTTC
i cb4.chrX              I 7 I 1
s caeRem4.Crem_Contig0   2530532 130 -  4500979 --------------------------------------GACATTTAATCAATTATCATATCCTTCCAACGGTCAACTCCAC------------CTATCCATAAAAAATATCTGCC------------CGCAC--GAGCATGCTCACATTTTT-TCCTATTCGCTTTGAATTTGTGTGAGAgtgttagtttttttg
i caeRem4.Crem_Contig0  I 62 I 28
s caeSp111.Scaffold626    363377 129 -  1189296 TTGAT------------------------------ATCGTCAT--AATCATTTAC----------------CCAACATCAT----------CCATAAACATAAAACATTTCCACCTGAGTGTACCCACGCAC--GAGCATGTCCACGTTTTACCTATacgcttctttttttatcgCGCGAGTGTTAGTT------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107284 181 +  4147112 TTCATCTTAACAGATCCTTGCCTTTTGCATTGTGGATTGTCTTCGAAACATATAC---A-ACCTTCA----TCAACAGCATTATCGTTTTCCCTTACATCCAAAAAAGCTTCACCTCAGTGTTCTC-TGCAC--GAGCATGTGCACGTCTTATCCCTTCGTTTTCTGAACTGATGCGCG-GTGTTAGTTTCCA--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I

a score=-5904.000000
s ce10.chrX              5844587 38 + 17718866 --TTAATTATTACCTTGCTGTATTTTGTGTTAATATTGAA--------
s cb4.chrX              11184027 28 + 21540570 --ACAATCAACCACTTtactcatttcaa----------aa--------
i cb4.chrX              I 1 C 0
s caeSp111.Scaffold626    363506 38 -  1189296 CTGCTTCTAATAGCCCAATTAACTTTAC----------AAacgtgttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107465 34 +  4147112 CAAATTTCAAAGGCTTCATATGct--------------aaatgtttga
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    12217 1495 -   658288 I
e caeRem4.Crem_Contig0   2530662 28 -  4500979 I

a score=69.000000
s ce10.chrX              5844625 2 + 17718866 CC
s caeRem4.Crem_Contig0   2530690 2 -  4500979 ct
i caeRem4.Crem_Contig0  I 28 C 0
e caePb3.Scfld02_0       4107499 0 +  4147112 C
e caeJap4.Scaffold18137    12217 1495 -   658288 I
e cb4.chrX              11184055 0 + 21540570 C
e caeSp111.Scaffold626    363544 0 -  1189296 C

a score=85645.000000
s ce10.chrX              5844627 148 + 17718866 TTTTTTCAGTGAAACTCGAGAAGTACTTTGCAAAGCAAGCGCCCGCCAACTCTTCCAACTCATCT----TCCAAC--GACCAAATCTACGAGCACAGCCCGTTCGACATCCCACTCGGAGCTGATTTTAGTAATCACCCGTTTTAACGG-------------------AAACT---------
s cb4.chrX              11184055 142 + 21540570 --ttttcagtgaaactCGAGAAATACTTCGCCAAACAAGCTCCGGCCAA---CTCATCTTCATCGGCA-TCAAAC--GatcagattttcgaaaccaGCCCGTTTGACATTCCGCTCGGTGCTGATTTTAGTAACCATccattctaa-----------------------aaaa---------
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   2530692 148 -  4500979 ttttttcagtaaaactcGAGAAGTATTTCGCCAAACAAGCTCCAGTcaattcttcatcttcatctgaaCCCGAACCAGACCAAATTTTCGATGCCGGAGCATTTGACATCCCACTTGGCAATGATTTCAGTGATCATCCATTCT-------------------------GAAT---------
i caeRem4.Crem_Contig0  C 0 I 3
s caeSp111.Scaffold626    363544 140 -  1189296 ttctttcagtgaAACTTGAAAAGTACTTTTCGAAGCAAGCCCAAACCAACTCTTCGGGCTCATCG----ACAAAC--GATCCAGCCTATGAAAGCAGCGCATTTGATATACCACTTGGTGCTGATTTTAGTAATCatccattttaa------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107499 148 +  4147112 attttttagtgaaACTCGAGAAGTACTTCGCCAAACAAGCCGCCCCGAACTCTTCTGGCTCGTCA----TCCAGt--gaaccactttttgaaagcaGCGCATTTGATATCCCACTTGGCTCAGACTTCAGTAATCATCCATTctaaccg-------------------gaaaa---------
i caePb3.Scfld02_0      C 0 I 17
s caeJap4.Scaffold18137    13712 176 -   658288 ttttttcagtaaaacttGAAAAGTATTTTGCCAAGCAAGCCCCGGTCAACTCGTCTGGTTCCTCA----ACGAAT--GGTCAAATCTACGAGAGTAGTCCATTTGATATTCCGCTCGGATCCGATTTTGCCAATCATCCGTACTAATCGCGGTGAAGTCGAGCAAATTGAAAGAGCAAAACT
i caeJap4.Scaffold18137 I 1495 C 0

a score=-9696.000000
s ce10.chrX              5844775 36 + 17718866 ----GGACGACGATGGTACGA--------------TAAACCAACTAAG-ACTGTC
s caeRem4.Crem_Contig0   2530843 21 -  4500979 ----ATAATATAATAACAACG-----------------------AGAA-------
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    363684 38 -  1189296 ----aaataatgattaCAATG-------------CTATTCCTTCTGAAACCTGTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107664 39 +  4147112 ----aaaaaaaaatgccaaaa------------cCCAATTCTCCTGAAAACTGTC
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18137    13888 44 -   658288 AGACTGAACAAAATTACAATCTTCGCTcgctcactcactcactc-----------
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11184197 31 + 21540570 I

a score=25950.000000
s ce10.chrX              5844811 73 + 17718866 ATTTTGCTCAAACGACAAC--TGAATCAAATGTGATATATTAAAAAAGGTTGATGCTAATTCACCTTAAACGGGA
s cb4.chrX              11184228 71 + 21540570 Actttgctcaaatttgact--tCAAAGACATGTGACG-ACT-TTAAAGGCTAGTCTAAAGTCAGCCTTCGCGGGA
i cb4.chrX              I 31 I 6
s caeRem4.Crem_Contig0   2530864 65 -  4500979 ATTTTGCTCAAATC---AT--TCAAGTACATGTGATA---T-AAAAAGGTTAATGTCGAATTAACC-AAACGGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    363722 71 -  1189296 ACTTTGCTCAAACAACAAT--TCAATTACATGTGATAAAAC-TTAAAGGTTGATGTAATATTGGCC-TAACGGGA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4107703 68 +  4147112 ACTTTGCTCAATCAG-ACT--TCTATTACATGTGATAAAAT-GATAAGGTTAATGTTGGATTAACC---ACGGGA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    13932 73 -   658288 actttgctcaaaaatgttttattgaaTACTTGTGATACAAC--AAAAGGCTGATGTTGATTCGGCCAAAgcggga
i caeJap4.Scaffold18137 C 0 C 0

a score=-4742.000000
s ce10.chrX              5844884 10 + 17718866 TTTTTTTTTA
s caeRem4.Crem_Contig0   2530929  2 -  4500979 --------TA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    363793  1 -  1189296 ---------G
i caeSp111.Scaffold626  C 0 I 3
s caePb3.Scfld02_0       4107771  1 +  4147112 ---------A
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18137    14005  2 -   658288 -------cc-
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11184299  6 + 21540570 I

a score=-46795.000000
s ce10.chrX              5844894 308 + 17718866 ATTTTTAACAAATGCCTTTTAA----TTCTTCATTCGAAAAAGTTTAATATGCTAT-------------------GTATGTGTAGTATTTTTGGATTTAAAATCAAAGTGTTTTTTCCTATAATCATTCAA--TTGTAAACCGTTGTTGCT-----TTTTTCTTCTTTTACTTCT-----TTCTTCATGTAATCTAGA-ATCCA---------TGGT-AACCTTTTCT-------------TCTTTTTC----------------------------------ATTTT--TTTTTCTCCACGAG------------CATAGAAATAGTTGCGTAGGTTAGGCATTTTGTG------CTCGTTTTTTCT----CCAAATTTCTGCAAACAGCT-------CATTCTCACGGATTTCTTTTAAATTGTTTT-------TTT
s cb4.chrX              11184305 222 + 21540570 AATTTTACAAAAtgccttttcaaaaatctctt----------------tgTGTCTT-------------------AACGCAGCTAAG-CTCTGTAATACTCCTCA------------------------AA--ATGTAAACTTTTGTTACt------------------gttttt-----tcaatcatttaATCTTGA-CGCTA---------TGGTAACCTGTtcac-------------ttaatttt-------------------------------------tt--ttcattttcatgc-------------CATTGATGCA-------AAGTTACAGTATCAATG------Cttttttt-------------AACTTGAgatcagtt-------ctttttttttcacttt------------------------
i cb4.chrX              I 6 C 0
s caeRem4.Crem_Contig0   2530931 268 -  4500979 TATTTTATCAAATGCCtttgttctcatttttg----------------tgtCTCTG-------------------CTATCTGtagat-ttttggaatattaaTCAG------TACATTT-TATCCATTCAA--TTGTAAACCgttgttgct-----------ttttttcattttt-----tttttcatttatccTAAA-ATCTA---------TGGT-ACCCgttctt-------------tcaacttt-------------------------------------ttaagTCATGTTTGTATG------------CATAGGGATAGTTTTTTAGGTTAGGTTCTCTTTG------CATTTTTT----------ACAAACTCAA---TAGCT-------CATTTTTACGGATTTT---------AAACC--ACAAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    363797 229 -  1189296 TTGTTCAGTAAATGCCTTTCCT----TTCTTA----------------TGTCTTTTG------------------CTATCTGTAGTA-TTTCGGATtctaaatcaa---tttttctttcatattcAATCAA--TTGTAAACTGttgttgc------------ttttttctttttt-----t---tcagatttttgagattttta---------tgGT-AACCTTTCTT-------------ACATGTTC-----------------------------------TATC--CTCAATTTTATGCG------------CATAGCTGT----------------AGTCCCATa-----------------------------------------------ggctttttttcaaattaacaC--AA--AAACC-------CTT
i caeSp111.Scaffold626  I 3 C 0
s caePb3.Scfld02_0       4107773 358 +  4147112 CAATTTAGTAAttgcctttttc----tttttc----------------tttttttcttcagtttttgaacttcgCTTATCTGTAGTA-TCTTGAATTTTTACTCAA------AGCATTCATATTCAGTCAAATTTGTAAACCgttgttgct-----------ttttttcattttt-----t---tcatgtattctAGA-ATCTA---------TGGT-aatcgttctttttttgtataggAATATGGTCAAAAATAGAGTTCTGGTATAGCAATCGCTTTCTATTGTT--TCCGATTCAATCCGAAATACTCATGAAATCTCTGTTG------AGTTTGCGATTTCCATACCCCAACTTTATTT--------------TCCTGACAGTAGTTGCATAGGCTTTCATACGGATTATTCT--AATTGCACCcgccaaactt
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18137    14007 243 -   658288 --aaaaaaaaaaaacgtttttt----tttctt-------------------------------------------cttcctgtAGTA-TTTCGAAATTC----caa-------------atttctatataa--ttgTAAACCGTTGttgctttttatttttcatttttcatttttatatatttttcatGTAACTTACA-attaattcattcattact-agccatccat-------------tcatgcat-------------------------------------cc--atcaatc-------------------cattattattattattcttatta-----tCAGTG------GGTGTTTTGTTTAGGCCTATGTACTTtagatt-----------cttttttt--------------------------------
i caeJap4.Scaffold18137 C 0 I 37

a score=7968.000000
s ce10.chrX              5845202 52 + 17718866 CTAATACTTTGCGCGCTAAAGCACAGTTTTCACTTTTCCAATGTCACATGCA
s cb4.chrX              11184527 33 + 21540570 ------tttctcc-------------tttcttccctaagattgtcacgtgca
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2531199 39 -  4500979 CTGtaacttcagt-------------ttttcactttttgaatgtcACATGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    364026 48 -  1189296 CTgtaacttcaaa----aaacctttttttttcactttaaaACGTCACATGCA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4108131 44 +  4147112 ttttaatttcaaa----aacac----tttttcactttcaaatgTCACACGCA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14250 37 -   658288 I

a score=34329.000000
s ce10.chrX              5845254 278 + 17718866 GCCTTT----CCT------------TCATAAATGCA---GCCTTATATCGAGTACTCACTACAAAACCCGCCT---------------T------AT-ATTTTCTGAGCAGTAACCTGGCCCT-TACCTAATCCT----CACGTGTGAATATGTAAATTTCATCGTT---------TTTGAAATCCCCCTGACCCCCTTTCAAATTAACAAAAACCA--------------ATGTTTTG--------------TTCCCCCTCCCCTTTT----TTCATTTGCCCTGTGAGCATTTCTTTGTAAACTTTCGTTACTTTTTTC-------CTTTTTGATTT---------TTTTTT-----CTAGGCCAA------TTTATATG---TTTTTCTTTT
s cb4.chrX              11184560 299 + 21540570 ctcatttttcttttccatctttatcagatcagttta---actttca------tatatgctaactttttcatttttccccttATCTATAT------AT-ATTT--CGAGCAGTATCCTGACCCT-GACCTAACCCC-TCAAAAATGTGAATATGTAAATTTCATCGTT---------ACtt---ttcccaaagt---ttgtaatttttgttttggtca---attttttgac----atttgaaaa----------tttctctttccccc------agaatttgCCCCGTGAGCatttctttgtaaacttctgttactttttt---------------atta---------ttttct--gtatttt---ct------tttctagg---tttcttattt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2531238 275 -  4500979 GCCTTTTCGCGTT------------AACGCAGCTAAAACAATTTCG------AGTATCCAAACTTTTCCGCCT---------------T------AT-ATTT--CGAGCAGTATCCTGACCCT-GACCTAACCTT----AATGTGTGAATATGTAAATTTCATCGTTTTC------ATTT---GTCCCCCGCCCTACTGTCATCTTttgttttgtca------ttttgactgttttctgAGAA----------TTCCTCTTCCCCCT------TTCATTTGCCCTGTGAGCatt--tttgtaaactttcgttactttttca-------------aattt---------ttttctaggaatttt---------------tata---tttctttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    364074 305 -  1189296 GCCTTT----TCA------------AAGCTATTCCA---GCCTTACTTCGAGTATATCCA---TTTATCGCCT---------------T------AT-TATT--TGAGCAGTATCAGGACCCT-TACCTAATCCT----TTTGTGTGAATATGTAAATTTCATAGTT---------CTTC---CCCCCACTGCGCtccgtcatttttttgttttgtcaTACTTTACTGac-atcttttgaaaaaaaacacctCTTCCCCCTCCCCCTCCTCAATTCATTTGCCCCGTGAGCATTTCT-TGTAAActtttgttactttttcc--------tttttaattt---------ttttct--aggtctaactct------tttttaaatacttttttAGCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4108175 288 +  4147112 gccttttt-cttg------------aaatcaatGCA---GCCTTAT------TATATTC---------CGCCT---------------T------TTAAATT--TGAGCAGTATCTGGACCCT-TACCTAATCCG---AACCATGTGAATATGTAAATttcgtcgtt---------ttct---ttttca-----------catttttcttttttttt-tgtttttctgtc-atATTTCGATTG-----ACCTTTTTAATTTGACC--------TTCATTTGCCCCGTGAGcatttttctgtaaacttttgttactttttttcttatgtatttttaactttgtaggcgattttat--gattttcacctt------tttttcta---atttttagct
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    14287 292 -   658288 GCTCTT----TCC------------CCAAAATTGCA---GCTTTTC-TCGAGTACTCTA----ACACCCGCCT---------------TACAAAAAT-GTTC--AGAGCAGTATCTTGACCCTCTTCCTAAATCCGTTAAACGTGTGAATATGTAAATTTCGacgtttttgtttcatttt---ctcCCAATTGCACACCTCACCTCACCAGTCTCCC--------------Tccgtttgat------------ttttttctttcc--------cttATTGCCCCTGTGAGCatttatttgtaaaatttcgttattattatt----------ttttattt---------ttttcc--acctCTTTTTCTAGGACAATtatgtg---ttttcaattt
i caeJap4.Scaffold18137 I 37 I 29

a score=-6145.000000
s ce10.chrX              5845532 35 + 17718866 CAATTCCAGGATTTGGGCTTTATTGACCCATTAAT
s cb4.chrX              11184859 14 + 21540570 cAATTC-------TGGG------GCGC--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2531513 28 -  4500979 caattt-------taggtACTATGCGCTGAGCGTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    364379 24 -  1189296 AAA----------TGGGTTA-AAACACAGATgaat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4108463 25 +  4147112 AAC----------TGGGCTCTaagcaaaaatgaat
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14579 29 -   658288 I

a score=90276.000000
s ce10.chrX              5845567 184 + 17718866 CCAA---------------------------------AACCAATACC-ATCACAAT-TTTCTGTATGTTGAGTATCGCTTGAATTATGTATACATAGCTGTAAATCTCTTGTTACAAT------------GTCA---TTTTT--GTTCGATATTCATATTCA-TGGAAAGGGAGGGTCTTACTTGCTC---TTCGTTCTTTTTGTGTCGTTT--TTTTGG------TTCTGCTTTTTGTCCCCCTTTT
s cb4.chrX              11184873 168 + 21540570 ------------------------------------------------ACCCAAAGATTTCTGTATGTTGATTATCACTTGAATTATGTATACATAGCTGTAAATCTATTGTTATGTC------------TTCCACtttttttAGTCCGATGTTCATATTCA-TGGAAAGGGAGGGTCTTACTCGCTCTATTTCAA--GTTCAGTgtcgttt--ttt---------------ctttgttctcgCTCTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2531541 193 -  4500979 CTGT----TCGCTCAGCtttttttC--------------TTAGTACCGTCCCCAAAATTTCTGTATGTTGAGTATCGCTTGAATTATGTA-ACATAGCTGTAAATCTCTTGTTATgcc------------ttca---ttttttgtttcgatgtTCATATTCA-TGGAAAGGGAGGGTCTTACTTGCTC---TTCAA--GTTCAGTGtctttt--ttt-------------gccttttttctttgtttc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    364403 201 -  1189296 ttgattcatttctgaGTTTAACTCC--GAGAAAATGTAATCGATCCC-ACCCAAATGTTTCTGTATGTTGAGTATCGCTTGAATTCTGTATACATTGCTGTATATCACTTGTTATGAC-------------------TTTTT--GTTCGATGTTCATATTCA-TGGAAAGGGAGGGTCTTACTTGCTC---TTCAT--Gttttgtgtcttca--ttt---------------ttttcttttcgctttt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4108488 201 +  4147112 ataa-----ttcTGAGTTTTGCCCCCTATAAAAATGTATCCACCACC-CCCAAAATGTTTCTGTATGTTGAGTACCTCTTGAATTCTGTATACATTG-TGTAAATCTCTTGTTatgtc------------ttca---ttttt--gttcgattttcaTATTCA-TGGAAAGGGAGGGTCTTACTTGCTC-----CAT--GTTTTGTgtcttcatgttt---------------ttttttctttgctttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    14608 182 -   658288 -------------------------------------------------CCAAAACGTTTCTGTATGTTGAGTA--ACTCGAAATTTGTA----TAGCTGTAAATCTCTTGttatgatgatgatgatgatgtca---TTCTTTGTTTCGATGTTCATATTCATTGGAAAGGGAGGGTCCTACTtgctt---ttt-t--gttctttttttttt--ttctagaaacgTTTTTGTCATTCGCTTCCGTTTT
i caeJap4.Scaffold18137 I 29 I 3359

a score=-2957.000000
s ce10.chrX              5845751  2 + 17718866 ---------------CT
s cb4.chrX              11185041  3 + 21540570 --------------ACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2531734  2 -  4500979 ---------------ct
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    364604 14 -  1189296 gtttcattttcttt---
i caeSp111.Scaffold626  C 0 I 533
e caePb3.Scfld02_0       4108689  0 +  4147112 C
e caeJap4.Scaffold18137    14790 3359 -   658288 I

a score=38102.000000
s ce10.chrX              5845753 199 + 17718866 ---CATTGATGC--CCTAATTCATTTCGCTCCAG-TATCAGAGATTATGA--ACTTTAACGACTACTGTTTTCC-----TATCTCTG-----CCATTTTCAGCAC--AGCATTTCCAAAATGTTATAATGTAGTATTTTTGTTA---ATTATGCAAGATTTTCGATTATACCATTTAA-TGCGTTGATCATGGTTA-CCACGAAAAATGAAATGTTTTGGTTTT
s cb4.chrX              11185044 211 + 21540570 ---ACGCAATATACTCAAACTCATTTCGTTCCAGAAA-AAGAGATTATGGAAACGTTTCATTTTGATGTTCTCTCTGTCTGTCTCCC-ATAACCATTTTC-TCTTTGAGCATTTCCGAAATGTCATGATGTATTACTTTGTTGATCCAATGCACAAGATTTCTATATATATCGTTTCATTTCGTTGATCATGCTTAGc-------aatgaaatgtttttttttt
i cb4.chrX              C 0 I 1396
s caeRem4.Crem_Contig0   2531736 198 -  4500979 ---ttGCAATGT--CCAATTTCATTTCGTTCCAG-TA-AAGAGATTATGG--ATGTTATCGTTTGATGTTCCCT-----TAACTCTCAATaaccttctccttttttgagcATTTACGAAATGTTATGATGTAATACTTTGTTGA---ACTATGCAAAATTTCTAC-TATATCATTTTATTTCGTTGATCATGCTTA-C-------AATGAAATGtgttgaattt
i caeRem4.Crem_Contig0  C 0 I 477
s caePb3.Scfld02_0       4108689 198 +  4147112 ttgagtTAAGTTCCCCCAATTCATTTCGTTCCAG-TA-AAGAGATTATGG--ATTTTACCATTTGATGTTCTTT-----CACCTTTGCTTAGCCAC-----------AGcatttccgaaattttatGATGTACAATTTTGTTAA---ACTATGCAAACTTTTTCCCTATATCATTTTATTTCGTTGATCATGCTTA-CCCT--CGAATGAAATGTGTTGGTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e caeSp111.Scaffold626    364618 533 -  1189296 I

a score=91.000000
s ce10.chrX              5845952 1 + 17718866 A
s caePb3.Scfld02_0       4108887 1 +  4147112 A
i caePb3.Scfld02_0      C 0 I 784
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11185255 1396 + 21540570 I
e caeSp111.Scaffold626    364618 533 -  1189296 I
e caeRem4.Crem_Contig0   2531934 477 -  4500979 I

a score=0.000000
s ce10.chrX              5845953 1253 + 17718866  
e caePb3.Scfld02_0       4108888  784 +  4147112 I
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11185255 1396 + 21540570 I
e caeSp111.Scaffold626    364618  533 -  1189296 I
e caeRem4.Crem_Contig0   2531934  477 -  4500979 I

a score=80862.000000
s ce10.chrX              5847206 350 + 17718866 TCATTATTCAATTCGAACAATGGCGCATCCGGCCC----CATTCCCTCCAAATCTTTTCGTCCGATC-TCCTCCGTAC--TCACACATCCTTTTGAACAATGGATTATTATAATTCCA-------AGGTGTGTCAGTCAGGGCATCTTACTTTTCAATTTCCAAATCGAC------ACCCCACGGAAGCTGGACCTTTTGT-------AAAATACGACACG-------CGCACGCGTGCCACCGAAC---TACTTCTCTCTTTCATTGCGC-----ATGTCCTCTCACCCCCCGAAAAGC------AGACTCC---CTTTTGGAATCGATTGTTCGTGCCCAC----TTTTCCGGCTTTATTTCGCAACACCA---CTTCTCGCTCCGTC-TCA------CCACATTACAAATTC
s cb4.chrX              11186651 362 + 21540570 TCATTATTCATCGCGAACAATAGCGCATCCGCCCTATCCATTTCCCTAGAAATCTCTGTTTTCCATC-TTTTCCGTAC--tttcatttcaatttgaacAATGGATTATTATAATTTCGA------AGGTGTCTTACTCCGCGC----GCGTTTCCGATTCCTCCAAAGCCTATTGGGCCCA--------------TTCTTTTCGTATGGAAAAATGACGAGGACAACGACGGCTTGTGCCACTACAT---ACAT--TTCTTCGCAGTATATGCCCCCCGTCGACACTCACTCCCAGAGGC------GGGGTCCTCTTTTTTGGTATCGATTGTTTGTGCCCAC-AATTTTTGGGGCTTTATTTCGCAACAC-----CACTTCAGTCC----TCA-----ACCACACTATAAACTC
i cb4.chrX              I 1396 I 356
s caeRem4.Crem_Contig0   2532411 328 -  4500979 TCATTATTCATCTCGAACAATAGGGCGTCCGCCCT----CTTATTCTGCAAATCTTCCCTTCCGATC-TCTTCCGTAC--TTCCATCTCATTTCGAACAATGGATTATTATAATTAGAAGTGCCTAGGTATCTTACTCCG---------ATTTTCGA-CCCGGAAAAGCT------GCCTC--------------TTCTGT-------GAAAAACGAC----------ACTACTCGTA-----ACAT---AAAT--TCCGTCGCAGTATTT-----CCGTCGACACTCACTCCCAAAGGC------GGGGTCC----TTTTGGTATCGATTGTTTGtgcccac---tttttttggctTTATTTCGCAACTCTC-TTCGCTCTAACAC----TCGGTCCCACCACATTATAAATTC
i caeRem4.Crem_Contig0  I 477 C 0
s caeSp111.Scaffold626    365151 322 -  1189296 TCATTATTCATCTTCAACAATAGCGCATCCGCcct----ttctgttttgaaatctcCCCTTCCGATCTTTTTCCGCACACTCTTTTCCCATTTCGAACAATAGATTATTATAATTTAAG------GTGTGCCTT-------------GAATCTTACATTTCCCAAC----------ACTTC--------------TTTTGT-------TAGAAATG------------GACGCGCGTGCCCTCACAC--------------TGGAGTATTC-----ACGTCGGCACTCACTCATAG-CGCGGGAGGGGGGCCT----TTTTGGTATCGATTGTTTGTGCCTACAAATTTTTCGGGCTTTATTTCGCAACACCC-TGCTCTCCGGTCCGTCGCCA--CACACCACATTACATATTC
i caeSp111.Scaffold626  I 533 C 0
s caePb3.Scfld02_0       4109672 327 +  4147112 TCACTATTCATCTCGAACAATAGCGCATCCGCcct----attcattttgaaatcttttcttCCGATC-TCTTCCGTAC-------TTCTA-TTCGAACAATGGATTATTATAATTTAAG------GTGCGCCTCTCTCACTCT-CCAAACTCTTCCATTTCCGAA-----------ATTCCTCAAAG--------TTGTGT-------GAAAAATG---------------ACGCGTGCCCCTACTCTCCTCAT--TGTGTTGTTGTATGT-----CCGTCGACACTCACTCAAAA-GGC------GGGGCCC----TTTTGGTATCGATTGTTTGTGCCCACTATTTTTT--GGCTTTATTTCGCAACACCCGTGCGCTCC-GTCCATC-CCA-----ACCACATTATATATTC
i caePb3.Scfld02_0      I 784 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I

a score=9526.000000
s ce10.chrX              5847556 74 + 17718866 CCATACGATTCGGGAGAGTTGTAGCA-TTTTG-------------AAATATA--TCTTGGCATAGTAGTTTTGCAATCGAAGCATCTGCT
s caeRem4.Crem_Contig0   2532739 81 -  4500979 CCACTTCTgtc-gaaaaattg-agcttttttgttttgttaaaaaaaaaaaca--tcgtAGAAAAG-----CTGCGATATAAACATCTGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    365473 74 -  1189296 CCACTTTCGTC-GCAAAACTATAGCA-TTTTG-------------AAAGACATCTCTCGGAATCGC-ATTCTATGAAATATACATCTGCT
i caeSp111.Scaffold626  C 0 I 380
s caePb3.Scfld02_0       4109999 73 +  4147112 CCACTTCCGTC-GCAAAGCTATGGCATTTTTG-------------AAAGACA--TCTTGGAATAGT-GCTCTATGAAATATACATCTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I

a score=-509.000000
s ce10.chrX              5847630 3 + 17718866 CAG-
s caeRem4.Crem_Contig0   2532820 3 -  4500979 -AAG
i caeRem4.Crem_Contig0  C 0 I 218
s caePb3.Scfld02_0       4110072 3 +  4147112 -AGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I
e caeSp111.Scaffold626    365547 380 -  1189296 I

a score=302.000000
s ce10.chrX              5847633 14 + 17718866 AGCTCTTTTTTTGA
s caePb3.Scfld02_0       4110075 14 +  4147112 Cgtccacattttga
i caePb3.Scfld02_0      C 0 I 477
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I
e caeSp111.Scaffold626    365547 380 -  1189296 I
e caeRem4.Crem_Contig0   2532823 218 -  4500979 I

a score=0.000000
s ce10.chrX              5847647 984 + 17718866  
e caePb3.Scfld02_0       4110089 477 +  4147112 I
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I
e caeSp111.Scaffold626    365547 380 -  1189296 I
e caeRem4.Crem_Contig0   2532823 218 -  4500979 I

a score=297.000000
s ce10.chrX              5848631 19 + 17718866 TCGAACCTGTTCGATTGTA
s caeRem4.Crem_Contig0   2533041 19 -  4500979 TTGAACCAATCGAACTTAA
i caeRem4.Crem_Contig0  I 218 C 0
e caePb3.Scfld02_0       4110089 477 +  4147112 I
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I
e caeSp111.Scaffold626    365547 380 -  1189296 I

a score=278.000000
s ce10.chrX              5848650 3 + 17718866 TAA
s caeRem4.Crem_Contig0   2533060 3 -  4500979 TAC
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4110566 3 +  4147112 tat
i caePb3.Scfld02_0      I 477 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I
e caeSp111.Scaffold626    365547 380 -  1189296 I

a score=3984.000000
s ce10.chrX              5848653 7 + 17718866 TGTTTGC
s caeRem4.Crem_Contig0   2533063 7 -  4500979 tgtttgc
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    365927 7 -  1189296 TGtttgc
i caeSp111.Scaffold626  I 380 C 0
s caePb3.Scfld02_0       4110569 7 +  4147112 tgtttgc
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I
e cb4.chrX              11187013 356 + 21540570 I

a score=20703.000000
s ce10.chrX              5848660 150 + 17718866 -ACAAAAATGAATATTTC--ATAACTATACTCCGT-CATCAATGTGCAAACATTCATACTCGAGCACTTGTACCAC-ATTCTTAAACTTTCCCTCCGCAGT-------TCTTCATTCACCCACCTGCTTTGATTTTC---------------------TCCGCCAAT----------CAATCGAGAAGTATTC
s cb4.chrX              11187369 183 + 21540570 acaaaaatggaatatttccaaaatataTACTCCATCCGTTTCCGTGCAAA----TACACTCGAGCACC--TACCAC-TCctcttctctcctttttctcaattcttgcCTTTCAAGTCCAATATTTCTTTTTATAATTCCTTAAACAATATTTCTCACCTTTTCCGCTGCTTCAAATCCATTGT-GAAG--TTC
i cb4.chrX              I 356 C 0
s caeRem4.Crem_Contig0   2533070 158 -  4500979 tcaaaaaatgaatatttc--atACCAATAGCCCGT-CATCTACGTGCAAA----CACACTTGAGCACC--TACGAC-CACGTTCCTCTTTCCctcctcaat-------tttcttattccaTATTATTTCACCTTTCTCAGTCACCAATAAT-------TTTTCCAAT----------CAATGT-GAAGTATTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    365934 157 -  1189296 tcaaaaaatgaaaaattc--atccTTATACTCCGT-CATCAA----CAAA----CATACTTGAGCACC--TacctcattcattttttttgacccTCTTTCCt------ttcccccccccccccccccccccctatTTACCTCCGATATAAT-------TCCCGCAAT----------CAATTTGGAAGTATTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4110576 141 +  4147112 tcaaaaaatgaatatttc--ataCTCATACTCCGT-CATCAACGTGCAAA----CACACTTGAGGACT--AACCACGTTCTTCCCTCCCGACCGCCTT--------------------CCTACTCATTTCCTTATTT-----TAATATAAT-------TCCTCCAAT----------CAATTT-GAAGTATTC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    14790 3359 -   658288 I

a score=316174.000000
s ce10.chrX              5848810 610 + 17718866  
s cb4.chrX              11187552 669 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2533228 589 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    366091 593 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4110717 608 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    18149 566 -   658288  
i caeJap4.Scaffold18137 I 3359 I 23

a score=1054.000000
s ce10.chrX              5849420 2 + 17718866 AG
s cb4.chrX              11188221 2 + 21540570 AG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2533817 2 -  4500979 TG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    366684 2 -  1189296 AG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4111325 2 +  4147112 AG
i caePb3.Scfld02_0      C 0 I 22
e caeJap4.Scaffold18137    18715 23 -   658288 I

a score=-398.000000
s ce10.chrX              5849422 8 + 17718866 GCATTTTG
s cb4.chrX              11188223 8 + 21540570 AACTTTTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2533819 8 -  4500979 ATGACGTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    366686 8 -  1189296 CTTTTTCG
i caeSp111.Scaffold626  C 0 I 65
e caePb3.Scfld02_0       4111327 22 +  4147112 I
e caeJap4.Scaffold18137    18715 23 -   658288 I

a score=-82.000000
s ce10.chrX              5849430 6 + 17718866 AAAGTG
s cb4.chrX              11188231 6 + 21540570 AGCAAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2533827 6 -  4500979 ACTGTG
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4111327 22 +  4147112 I
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeSp111.Scaffold626    366694 65 -  1189296 I

a score=-263.000000
s ce10.chrX              5849436 9 + 17718866 AAAACTGGA
s cb4.chrX              11188237 7 + 21540570 ATGA--GGG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4111327 22 +  4147112 I
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeSp111.Scaffold626    366694 65 -  1189296 I
e caeRem4.Crem_Contig0   2533833 0 -  4500979 C

a score=1434.000000
s ce10.chrX              5849445 15 + 17718866 AATTATAAATTAAAA
s cb4.chrX              11188244 15 + 21540570 GAttaaatatcaaaa
i cb4.chrX              C 0 I 8
s caePb3.Scfld02_0       4111349 15 +  4147112 GATGATGAATTGATA
i caePb3.Scfld02_0      I 22 C 0
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeSp111.Scaffold626    366694 65 -  1189296 I
e caeRem4.Crem_Contig0   2533833  0 -  4500979 C

a score=571.000000
s ce10.chrX              5849460 29 + 17718866 AAGTGGAAAGAATGTTTCAAAGGTGGAGT
s caePb3.Scfld02_0       4111364 29 +  4147112 GAGTTTTTGGAATGTCACGGAAGTCGAAT
i caePb3.Scfld02_0      C 0 I 1040
e caeJap4.Scaffold18137    18715 23 -   658288 I
e cb4.chrX              11188259  8 + 21540570 I
e caeSp111.Scaffold626    366694 65 -  1189296 I
e caeRem4.Crem_Contig0   2533833  0 -  4500979 C

a score=0.000000
s ce10.chrX              5849489 582 + 17718866  
e caePb3.Scfld02_0       4111393 1040 +  4147112 I
e caeJap4.Scaffold18137    18715  23 -   658288 I
e cb4.chrX              11188259   8 + 21540570 I
e caeSp111.Scaffold626    366694  65 -  1189296 I
e caeRem4.Crem_Contig0   2533833   0 -  4500979 C

a score=34.000000
s ce10.chrX              5850071 5 + 17718866 TTTGC
s cb4.chrX              11188267 5 + 21540570 tttca
i cb4.chrX              I 8 C 0
e caePb3.Scfld02_0       4111393 1040 +  4147112 I
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeSp111.Scaffold626    366694 65 -  1189296 I
e caeRem4.Crem_Contig0   2533833 0 -  4500979 C

a score=605.000000
s ce10.chrX              5850076 35 + 17718866 ---TCATGAT--TAAAACTAAATTGGGAAAATCGTTCAAA
s cb4.chrX              11188272 38 + 21540570 taataattttgatcaaattcAC--GAGAAGATCGTCGAAA
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold626    366759 33 -  1189296 ---TTATTCT--TAAAACTCGA--AGAATAATCATTTCAC
i caeSp111.Scaffold626  I 65 C 0
e caePb3.Scfld02_0       4111393 1040 +  4147112 I
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeRem4.Crem_Contig0   2533833  0 -  4500979 C

a score=955.000000
s ce10.chrX              5850111 5 + 17718866 AAAAA
s cb4.chrX              11188312 5 + 21540570 AAAAC
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       4112433 5 +  4147112 aaaaa
i caePb3.Scfld02_0      I 1040 C 0
e caeJap4.Scaffold18137    18715 23 -   658288 I
e caeSp111.Scaffold626    366792 0 -  1189296 C
e caeRem4.Crem_Contig0   2533833 0 -  4500979 C

a score=1100.000000
s ce10.chrX              5850116 4 + 17718866 AGTT
s cb4.chrX              11188317 4 + 21540570 ACTT
i cb4.chrX              C 0 I 3
s caePb3.Scfld02_0       4112438 4 +  4147112 attt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    18738 4 -   658288 AATT
i caeJap4.Scaffold18137 I 23 C 0
e caeSp111.Scaffold626    366792 0 -  1189296 C
e caeRem4.Crem_Contig0   2533833 0 -  4500979 C

a score=184411.000000
s ce10.chrX              5850120 351 + 17718866 ATCTT--------AATTATTGC------TT----TTCAGAAGCAAAAGTATACTCAAAGGGTTGCTTCGAGTTGGATATAAAACGCTTTATCTGACAGATAATGAACAAAATCAGTACATGGAAAAAGCAATGTGCATTTTGGACTTTTTCGTTGTGCCCACCGAACAACGCTCCGGAAATGGATTCAAAATGTTTGATGAAATGTTAAAAGTATG------TTTTTTTAAAT--------------GTTTGTAGAAAAGTGACTTAG-----AGTTTTTAA------ATGT-TCTACTTCAGGCTGAAAACGTAACAGTAGACCAATGCGCATTCGACAAACCATCAGCTGCTCTCCAACAATTTCTAGAAAAATATTATGATAGAAAAGATTTGGGTAA
s cb4.chrX              11188324 340 + 21540570 GTTgtaaatt---tgcaatt--------tt----ttcagcaacaaaAGTGTCCTAAAAGGAATTCTACGTGTCGGATACAAAACTCTTTACCTCACGGATAATGAACAAAATCAGTACATGGAAAAAGCAATGTGCATTCTAGACTTTTTCATTGTACCAACAGAACAACGCTCTGGTAACGGATTCAACATGTTTGATGCCATGCTGAAAGTGAG-------------------------------AATT----GGAACTTG----------AATCTCTAAATCcttaaat-tgaatttcaggctGAAAATGTGTTAGTTGAACAGTGCGCATTTGATAAACCATCTGCAGCCCTTCGGCAATTTTTGGAGAAGTATTATGATCAGAAAGAACCAGGTAT
i cb4.chrX              I 3 I 646
s caeRem4.Crem_Contig0   2533833 361 -  4500979 ATCTTGTGCT---TAGAATCAT-----GTT----TTCAGAAGCAAAAGTGTTTTGAAAGGACTTCTTCGAGTTGGATACAAAACTCTATACCTGACAGATAATGACCAGAATCAGTACATGGAGAAGGCGATGTGCATTTTGGACTTTTTTATAGTTCAATCAGAACAACGGGCTGGAAATGGatttaaaatgtttgaagCAATGTTAAAAGTGGG------TTGT-TTAACA--------------AGTTTTACGATACTTGTTTTGCACATaatcccaaa------aaat-ttatttccaggCAGAAAATGTAACTGCTGATCAGTGTGCCTTTGATAAACCATCTGTTGCATTCCGtcagtttcttgaaaaatattacgACCAGAAAGATCCAGGTAA
i caeRem4.Crem_Contig0  C 0 I 516
s caeSp111.Scaffold626    366792 333 -  1189296 -------------AATAATTAC-----CGTAAA-TTCAGAAGCAAAAGCTTGCTGAAAGGAATTCTCCGAGTTGGATACAAAACTCTCTATTTAACTGACAACGatcaaaatcaattcatGGAGAAAGTCATGTGTATTCTGGACTTTTTCGTTGTTCCCGATGAGCAACGTTCTGGCAATGGGTTCAAAATATTTGACACCATGCTGAAGGTGAT------TTGAATTGCTA---------------------------Tctctcaaagaaaaact----------------tcttttaCAGAACGAAAACGTCACCCCAGATCAATGTGCCTTTGATAAACCATCTGCTGCTCTTCAGCAATTCTTAGAGAAGTACTACGGCCTCAAAGACCCAGGTAA
i caeSp111.Scaffold626  C 0 I 493
s caePb3.Scfld02_0       4112442 386 +  4147112 ttcctgattcttAAAGAACCAA-----TTtaagtttcagaaacaagaGCATACTAAAAGGCATTCTCCGTGTTGGATACAAAACACTTTACTTGACTGATAACGATCAAAACCAATATATGGAGAAAGTTATGTGCATTTTGGACTTTTTCGTGGTGCCGGCTGAACAACGTTCTGGAAAtggattcaaaatgtttgacgCTATGTTGAAGGTAATTACTGCTTTTATTACCAGAAAGATTAGATTCAATC----AacattcattcgaaaaataatcCCAAA------ATATATCAATTACAGGCCGAAAATGTCGAAGTCGATCAATGCGCATTTGATAAGCCTTCAACAGCACTTCAACACTTCTTAGAGAAGTACTATGGACTCAAAGAACCCGGTAT
i caePb3.Scfld02_0      C 0 I 4
s caeJap4.Scaffold18137    18742 352 -   658288 --------------ATAATGATGAGCAGTT----TTTAGCACCAAAAGTCTGTTGAAAGGGCTCTTAAGAGTGGGCTACAAAACGTTGTACTTGACGGATAACGATCAAAATCAATTCATGGAGAAGACAATGTGCATTTTAGACTTTTTCATCGTCCCATCTGAGCAGAGGAAGGGAAACGGGTACAATATGTTTGAGGCTATGCTTAAGGTACATATGCAATATATTA-----------------AATC----CAAATACTGTACATAGATAGT---AAA------ACAG-TATTTTATAGGCGGAAAACGTGTCGGTCGATCAGTGTGCTTTTGACAAACCATCTGCAGCTTTGcaacagttttttgaaaagtattaCGATCGGAAGGAGCCAGGTAA
i caeJap4.Scaffold18137 C 0 C 0

a score=0.000000
s ce10.chrX              5850471 4 + 17718866 GTAA
e caePb3.Scfld02_0       4112828 4 +  4147112 I
e caeJap4.Scaffold18137    19094 0 -   658288 C
e cb4.chrX              11188664 646 + 21540570 I
e caeSp111.Scaffold626    367125 493 -  1189296 I
e caeRem4.Crem_Contig0   2534194 516 -  4500979 I

a score=-281.000000
s ce10.chrX              5850475 33 + 17718866 ATTGCATTCT----TGTACCACCGATACATTACAAAA
s caePb3.Scfld02_0       4112832 37 +  4147112 TAggtgttttttcgtttttcaacgATACATTGCAAAA
i caePb3.Scfld02_0      I 4 I 501
s caeJap4.Scaffold18137    19094 10 -   658288 ---------------------------CATTTCGAGA
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11188664 646 + 21540570 I
e caeSp111.Scaffold626    367125 493 -  1189296 I
e caeRem4.Crem_Contig0   2534194 516 -  4500979 I

a score=-6078.000000
s ce10.chrX              5850508 898 + 17718866  
s caeJap4.Scaffold18137    19104 641 -   658288  
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4112869 501 +  4147112 I
e cb4.chrX              11188664 646 + 21540570 I
e caeSp111.Scaffold626    367125 493 -  1189296 I
e caeRem4.Crem_Contig0   2534194 516 -  4500979 I

a score=-2.000000
s ce10.chrX              5851406 9 + 17718866 ATCCGCAAC
s caeSp111.Scaffold626    367618 9 -  1189296 ACTCATAAT
i caeSp111.Scaffold626  I 493 C 0
s caeJap4.Scaffold18137    19745 9 -   658288 ATCAATTTC
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4112869 501 +  4147112 I
e cb4.chrX              11188664 646 + 21540570 I
e caeRem4.Crem_Contig0   2534194 516 -  4500979 I

a score=-1294.000000
s ce10.chrX              5851415 1 + 17718866 -A
s cb4.chrX              11189310 1 + 21540570 -A
i cb4.chrX              I 646 C 0
s caeRem4.Crem_Contig0   2534710 1 -  4500979 -a
i caeRem4.Crem_Contig0  I 516 C 0
s caeSp111.Scaffold626    367627 1 -  1189296 -A
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    19754 1 -   658288 T-
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4112869 501 +  4147112 I

a score=144602.000000
s ce10.chrX              5851416 161 + 17718866 ---TTTCCAGTATGGCAATCAAACAAATATGCATTATGTTCAAATTTTTTCATTGGACGTCACCCAACTGTTCCATTCACCCCTCGCCAGACAAAACGAGCGTCTCGAGCCAGTTCAGCTGTGTCCAGTCATGCATCCAGCCGTAACACCTCCCCAATTGGGGT
s cb4.chrX              11189311 161 + 21540570 ---TTTCTAGTGATGCAATCCAACAAGTACGCAGTCTTCCCGAACTTCTTCATCGGCCGTCATCCAACTGTTCCATTCACTCCTCGCCAAACAAAACGAGCTTCTCGAGCCAGTTCAGCTGTTTCCAGTCACACCACCAGCAGAAATACTTCACCAATTGGGGT
i cb4.chrX              C 0 I 314
s caeRem4.Crem_Contig0   2534711 161 -  4500979 ---ttttcagttatgcAATCAAACAAATATGCAGTATTCCCAAGCTTTTTCATTGGACGTCATCCAACAGTTCCATTCACTCCTCGTCAAACAAAACGTGCTTCACGTGCTAGTTCCGCAGTTTCCAGTCATACTCCAAGCAGAAATACATCACCAATTGGGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    367628 160 -  1189296 ----TTTCAGTTACTCAAACGAACAAATATGCAGTTTTCCCTAACTTCTTCATCGGACGCCATCCAACTGTTCCTTTTACTCCGCGTCAAACAAAACGAGCTTCTCGTGCAAGTTCTGCTGTTTCCAGCCACAACACTAGCAGAAACACTTCACCAATTGGGGt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4113370 161 +  4147112 ---tttccagtGTTCCAAACTAACAAGTATGCCgttttctcaaacttctttATTGGACGCCACCCAACTGTTCCATATACTCCACGTCAAACAAAAAGAGCTTCCAGAGCTAGTTCCGCAGTTTCCAGTCACAACACTAGCAGAAATACATCACCAATCGGGGT
i caePb3.Scfld02_0      I 501 C 0
s caeJap4.Scaffold18137    19755 164 -   658288 TGTATTTCAGTCTGGCAATCAAACAAGTACGCAGTGTACCCAAACTTTTTCATCGGACGACACCCAACCATCCCATTTACACCACGCCAAACAAAAAGAGCATCTCGAGCAAGTTCAGCCGTCTCAAGCCACACTTCTAGCAGAAATACGTCACCAATTGGAGT
i caeJap4.Scaffold18137 C 0 C 0

a score=1233.000000
s ce10.chrX              5851577 4 + 17718866 TTGT
s caeRem4.Crem_Contig0   2534872 4 -  4500979 TCGT
i caeRem4.Crem_Contig0  C 0 I 9
s caeSp111.Scaffold626    367788 4 -  1189296 atgt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4113531 4 +  4147112 TTGT
i caePb3.Scfld02_0      C 0 I 31
s caeJap4.Scaffold18137    19919 4 -   658288 AAGT
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11189472 314 + 21540570 I

a score=-479.000000
s ce10.chrX              5851581  2 + 17718866 G---------A
s caeJap4.Scaffold18137    19923 11 -   658288 GCTCAGAATTA
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4113535 31 +  4147112 I
e cb4.chrX              11189472 314 + 21540570 I
e caeSp111.Scaffold626    367792  0 -  1189296 C
e caeRem4.Crem_Contig0   2534876  9 -  4500979 I

a score=-1973.000000
s ce10.chrX              5851583 14 + 17718866 ATAAA-AAAATAGTT
s cb4.chrX              11189786 14 + 21540570 ACaaa-aaaacagtc
i cb4.chrX              I 314 C 0
s caeRem4.Crem_Contig0   2534885 13 -  4500979 ATAAACAAAGCAG--
i caeRem4.Crem_Contig0  I 9 C 0
s caeSp111.Scaffold626    367792  2 -  1189296 -------------tt
i caeSp111.Scaffold626  C 0 I 11
s caeJap4.Scaffold18137    19934 14 -   658288 TCAAA-ATAATAATG
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4113535 31 +  4147112 I

a score=99586.000000
s ce10.chrX              5851597 166 + 17718866 GTTTTGCAAA---------------AAATAATATTTCAGCGCAATCGCCCCCGTCACGACTCGGTTGCTGATTTGATGCGCCAGGA---TATGTTAGCCGGAGTGCGTGCTGAAGTAGACCCAAATAGTCCAACAGGCTTGAAAAATGCTCGAGATTTTGGACATCGCCGGATTTGGTG--ATAAG
s cb4.chrX              11189800 183 + 21540570 aatttttaaataaaaaaaaacagatttcccatttttcagcgtAATCGCCCACGCCACGACTCAGTCGCTGATCTGATGCGTCAAGA---CAATTTCCCCAGAGGAAGATCAGTAATTGACCCAAATAGTCCGGCAGGATTCAAACTCACTAGAGACCAGAGACACGAACCAATCTGGTGAAATGGG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2534898 167 -  4500979 AATTGTAAAA-----------------CTCGCTTTTTAGCGTAATCGTCCGCGTCACGACTCTGTTGCCGACCTTATGCGACAAGAAACAAACTTTGCTAGAGGAAGAACTCCGGTGGATCCAAATAGCCCAACTGGTGTGAGATTCTATAGAGATCAAAAACATCAACAGATATGGTG--ATCGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    367805 166 -  1189296 cattttaaaa---------------actactttttttAGCGTAACCGTCCTCGCCACGACTCTGTAGCTGATTTGATGCGTCAGGA---TATGTTTTCTGGGGTTCGAGCAGAGGTTGATCCAAATAGTCCGACTGGATTAAAGAACTCGAGAGATTTTGGACATCGCCGAATTTGGTA--ATCAG
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       4113566 166 +  4147112 AATTCTAAAA---------------CTTCAACATTTCAGCGCAATCGTCCCCGTCATGACTCTGTTGCTGATTTGATGCGTCAAGA---TATGTTTTCTGGAGTTCGTGCAGAAGTTGATCCAAATAGTCCAACTGGATTGAAGAACAGTAGAGATTTTGGGCATCGGCGGATTTGGTG--ATGGG
i caePb3.Scfld02_0      I 31 I 24
s caeJap4.Scaffold18137    19948 155 -   658288 AATTAAAATA------------------------TTTAGCGTAATAGACCTCGTCATGACTCGGTGGCCGATTTGATGCGACAAGA---CATTTTTGCCGGAGTTCGTGCCGAAGTTGACCCGAATAGTCCGACAGGATTGAAGAACTCTCGGGATTTTGGGCATCGGAGAATTTGGTG--ATA--
i caeJap4.Scaffold18137 C 0 C 0

a score=-2563.000000
s ce10.chrX              5851763 13 + 17718866 CTGCTAGTTTTTG
s cb4.chrX              11189983  5 + 21540570 --------CTCCA
i cb4.chrX              C 0 I 21
s caeRem4.Crem_Contig0   2535065  5 -  4500979 --------TTTCA
i caeRem4.Crem_Contig0  C 0 I 26
s caeSp111.Scaffold626    367971  4 -  1189296 ---------TTGG
i caeSp111.Scaffold626  C 0 I 1
s caeJap4.Scaffold18137    20103  6 -   658288 -------TTGTTG
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4113732 24 +  4147112 I

a score=-841.000000
s ce10.chrX              5851776 84 + 17718866 ATT----------------ATTTACTTTGGCGGCAGTACACAATAAATATGCCTCCTTGCCTTAGTTATGATCTCATGATTTTTGATATTTCAATCCTTT-------
s cb4.chrX              11190009 63 + 21540570 GTTCTCACA----------ACTTGATTTGG------------ACAAGAGTGCCTCTTCGTCTTAGTTTTGATCTC---------------TTATCGCTTT-------
i cb4.chrX              I 21 I 15
s caeRem4.Crem_Contig0   2535096 56 -  4500979 ATATTTGCA----------AATAAAT-------------------AGTGTGCCACTTTGCCTTTGTTTTGATCTC---------------TTATCGCTTT-------
i caeRem4.Crem_Contig0  I 26 I 794
s caeSp111.Scaffold626    367976 72 -  1189296 ATTCATTCACTCATAACacaattaattttc------------attagtgtgcctcttt-ttcttattttgatCTC---------------TCACCGCTTT-------
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       4113756 59 +  4147112 ATTCTT-------------GGTGGTTTCTC------------TTTAGCGTGCCTGTAT-TCTTAGTTTTGATCTC---------------TTAACGCTTT-------
i caePb3.Scfld02_0      I 24 C 0
s caeJap4.Scaffold18137    20109 66 -   658288 -----------------ACATTTTatttgc--------aaaacaaaacatttggCTGAATCCTAATT-TGATCTC---------------CAATTTCTTTCTCCCCC
i caeJap4.Scaffold18137 C 0 C 0

a score=-99.000000
s ce10.chrX              5851860 11 + 17718866 -TTCATAATTCT
s cb4.chrX              11190087 11 + 21540570 -CTTATGCTTTT
i cb4.chrX              I 15 I 800
s caeSp111.Scaffold626    368048 10 -  1189296 -TTCATAATCC-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4113815 11 +  4147112 -CTCATAATCTT
i caePb3.Scfld02_0      C 0 I 1216
s caeJap4.Scaffold18137    20175  6 -   658288 CTTCTT------
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2535152 794 -  4500979 I

a score=91.000000
s ce10.chrX              5851871 1 + 17718866 T
s caeJap4.Scaffold18137    20181 1 -   658288 T
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4113826 1216 +  4147112 I
e cb4.chrX              11190098 800 + 21540570 I
e caeSp111.Scaffold626    368058 0 -  1189296 C
e caeRem4.Crem_Contig0   2535152 794 -  4500979 I

a score=-2533.000000
s ce10.chrX              5851872 63 + 17718866 CTAATCGCTTAATATCAAAGTTGGCTGTTTTCAAA---CTCAAAATAATA-----AATACGAATTATTCAT
s caeSp111.Scaffold626    368058 56 -  1189296 -----------AAATTA----TGGCTCTTTCGATATATCTCAGAATAAAGTATGTAATGCagactattcaa
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    20182 49 -   658288 -------CTATGCACTT----TGTCGCTTTGGA-----Gccgtaaaaata-----aatatgagcgaataa-
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4113826 1216 +  4147112 I
e cb4.chrX              11190098 800 + 21540570 I
e caeRem4.Crem_Contig0   2535152 794 -  4500979 I

a score=-5795.000000
s ce10.chrX              5851935 42 + 17718866 ACACAATGAACataattattt-----aatttttaaaatatCAACAAA----
s caeSp111.Scaffold626    368114 31 -  1189296 -----------aaaaccagtt-----tcATTGTAGAAAATAATAGTT----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4115042 45 +  4147112 accccattaacaaaataatttatgaatATTTATACAAAACA--TGAT----
i caePb3.Scfld02_0      I 1216 C 0
s caeJap4.Scaffold18137    20231 42 -   658288 ----atatatttaaatTGGTT-----GTTTTTATTAACACACTTTCTCCAG
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11190098 800 + 21540570 I
e caeRem4.Crem_Contig0   2535152 794 -  4500979 I

a score=-8395.000000
s ce10.chrX              5851977 48 + 17718866 AAACTCGTAATAAAAGATAGAATGTAA----TTAGATGATTGAGTTAAATTT
s cb4.chrX              11190898 36 + 21540570 --------------AAATTA-ACATTTGAAACCAGA-AATTAACTCGtatta
i cb4.chrX              I 800 I 10
s caeSp111.Scaffold626    368145 31 -  1189296 -------------AAGATCGTATGTTT----CCGGA----TAAATtacagtt
i caeSp111.Scaffold626  C 0 I 11
s caePb3.Scfld02_0       4115087 26 +  4147112 -------------AAGATCg-----tt----tcaaa----taaattaaatta
i caePb3.Scfld02_0      C 0 I 20
s caeJap4.Scaffold18137    20273 34 -   658288 ---------------GAGTGTAtattcaaaaatagaaaagaaaataaaa---
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2535152 794 -  4500979 I

a score=23438.000000
s ce10.chrX              5852025 66 + 17718866 TCAGTTATGGT------------------ATTACTAACCGGAGTACGTCTGAAGCTAATGCTGAACCGATTG--------------------------GGATTGTGGCCT
s cb4.chrX              11190944 92 + 21540570 gtaCTCACGGT------------------ACAACCAAACGGAGCAAATCTGAAGCCAAAGAAGATCCAACTGGGATTGcagtctaaaaaattcaattcgaaCATGTATAA
i cb4.chrX              I 10 C 0
s caeRem4.Crem_Contig0   2535946 66 -  4500979 TCACTCATGGC------------------ACAACCAGACGAAGCAAATCAGATGCCAATGCAGAACCAATTG--------------------------GAACGCTTACCT
i caeRem4.Crem_Contig0  I 794 C 0
s caeSp111.Scaffold626    368187 66 -  1189296 ttacTCACGGA------------------ACTACAAGACGGAATACTTCTGACGCAAGAGATGCTCCGGTTG--------------------------GAATGGTAGcct
i caeSp111.Scaffold626  I 11 C 0
s caePb3.Scfld02_0       4115133 84 +  4147112 TTACTTCTGGAGAATGCGACTTTTATGGTACAACAAGACGCAACATTTCTGATGCCAAAGATGCACCAACAG--------------------------GAATAGTTGCCT
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18137    20307 64 -   658288 --actcatgGC------------------ATCACCAATCGGAGCATATCGGTTGCCAGTGCAGCTCCAAGCG--------------------------GAATTGTAGCCT
i caeJap4.Scaffold18137 C 0 C 0

a score=-33778.000000
s ce10.chrX              5852091 114 + 17718866 AAAATGCAAAAGTTTTTGATTGATGGTAACCTAAACAGGTATCTAGAGAGA-------TCTA-------------GAGTTCAATTAACCGAATAGGGTCGTTTTTTTTTCAATTT-------TAAAAAGT--------------------TGCACTCACTT
s cb4.chrX              11191036 134 + 21540570 GAAGAACATAT-----TGATAGAAGATCAGAC-AACCGTCAATTAGAATCTTTGGCTCATTTTGTTCTACAGATTTAGTGAATTCAGTTGGAAACAGTTTTATTgcaaagatttt-------caaaattcccgtTT--------------AAACCTTACCG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536012 134 -  4500979 GAAGTACgtat----------------------gtttttcttttaaattat-----tCTTTAtgtcttccaaaaaaaatttattcggGATAGAATGGCCGAAAATCAGGAAATTTTAATgtgcagaatttttttttactaaaaaggaaaaaaagctTGCCT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    368253  45 -  1189296 ggaa----------------------------------------aaagaag-------tgtaTTTGTTGGAAGGCAAGTTTAAT---------------------------------------------------------------------ACTCACTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4115217  64 +  4147112 GAAATCAAAAT------------------------------GCTCAATAAT-------CTCACCTTCTACATGTTATCTTTATTTG--------------------------TTT-------C---------------------------TGGTCTTACCT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    20371   0 -   658288 C

a score=236174.000000
s ce10.chrX              5852205 361 + 17718866 TGTGAAAGACAGTTTCTCCAAATATCCATAACCAGCTCTGTGCATAGGCTATGGTAGAATAGTAATCGGATTGTAACCGTGTGTGCTTGATTCCACTGAAAACCGATGCTACGATATCATTCACAATAATTCGCCCGTTTTTTGTTATTGGGGCATAAATTCCCTTTCTTTCGGTTATCGATATTCTCATGACTCTTTGTTGGCGAAATTTTCCCTAAAA-------TAGAAA-----TCAA----------TTGTTATTG--GAAAACTGAACAGAAAACTT---------ACTTTGTAAAGAAGAACTAGACAATCTCCAACTTTAAGCTCTTCAGCGTAGACCACGTTTCGACCTTTGGGAAGGTATTTGACGTACTCCGCGTAGTTTTCT
s cb4.chrX              11191170 357 + 21540570 TATGAAACACTGAATCTCCAAACAACCGCAACCAACTTTGAATATAAGCTACTGTGGAGTAATACTGCCCTTGCAAACGGGTATGCTTTATTCCGCTATACACCGAGGCAACAATGTCGTTCACAATTATCCTTCCATTCTCTGTGATTGGAGCGAATATTCCTTTACGTTCAGTGATGGAAATGCGCATAACCCGTTGTTGCCGATATTTTCcctgca---------aaaaa-----ttaa----------tttttgttgtGACCAATC----AGATAATTT---------ACCTTATAAAGAAGAACAAGACAGTCTCCGACTTTCAGTTCCTCAGCAAAAACCACATTGCGCCCTTTGGGAAGATATCGCACATACTCAGCGTAGTTTTCt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536146 358 -  4500979 GATTAAAAACAGATTCTCCGAACAGTCGCatccaactttgaaaataagcTACGTTTCCATAGAACTGTCCTTGTAAACGAGTATGCTTGATCCCGCTATACACAGATGCAACAATGTCGTTCACAATAATTCTTCCATTCTCTGTTATTGGGGCGAATATTCCCTTTCTTTCGGTAATGGAAATCCTCATAACTCGTTGTTGTCGGTACTTTCCCTGC--------------a-----ttcatg--------tttttgtttccaggaatttaaaaaaaaactc---------actttataCAGAAGAACAAGACAatccccaattttcagatcttcagcAAAAACAACGTCTCGTCCTTTGGGGAGATATCTAACATATTCCGCGTAATTCTCT
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    368298 355 -  1189296 TATGAAAAACTGCATCTCCGAATAATCGCAGCCAACTTTGAATATAAGCTATTGTTCCATAATACCAGGCTTGGAAACGAGTATGCTTGCTTCCACTGAACACCGACGCAACAATATCATTCACGATAATTCGTCCGTTTTGTGTAATTGGAGCGAATATTCCTTGTCTTTCAGTTATCGAAATACGCATAACTCTTTGTTGTCGGTATTTTCCCTAG----------AAGAAgatatttgaagaagaagcctttc--------------------aaaaatt---------actttGTATAAAAGAACAAGACAATCTCCGATTTTGAGGTCTTCTGCGAATACAACATTCCGTGCTTTTGGAAGATACTTCACATATTCAGCatagttttct
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       4115281 357 +  4147112 TGTGAAAAACTGCATCGCCAAATAATCGCAACCAACTTTGAATCCACGCTATTGTTCCATAATACTGTCCTTGCAAACGGGTATGCTTCATTCCGCTGAAGGAAGATGCAACAATATCGTTCACAATAATTCTTCCATTCTCCGTGATTGGAGCGAATATTCCTCGTCTCTCGGTGATTGAAATCCGCATAACACGTTGTTGCCGGTATTTTCCCTAG----------AAAGA-----CTaatgagaaaattattttatag-------------aaaaaaatt---------accttgtACAGCAAAACAAGACAATCTCCAATCTTCAAATCTTCTGCAAAAACCACATTTCGACCTTTTGGAAGATACTTGACGTATTCGgaatagttttct
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18137    20371 379 -   658288 TGTGGAAAAATGGTTCTCCAAACAGCCTCAACCAACTCTGCACTCTTGCCACAATTCCATAGTATTTGTTTTGCAATCGCGTATGCTTAATACCACTATGAACCGACACAACAATGTCGTTCACAATTATTCGACCATTCTCTGTGACCGGCGCGAATACTCCCATTCTCTCGGTTATCGAAATTCGCATCACGCGTTGTTGGCGGTATTTTCCCTGCAAGAAAATGGGAAGA-----TTGACGGAA-----TATTCATAC--ATAAATTG---TCATAATTTGAATCTCAAACCTTATATAACAGGACAAGACAATCTCCAACTTTCAGATCCTCAGCGAATACAATATCGCGGCCTTTTGGCAAATACCGAATAAACTCTTCGTAGTTTtct
i caeJap4.Scaffold18137 C 0 C 0

a score=422.000000
s ce10.chrX              5852566 1 + 17718866 A
s caeRem4.Crem_Contig0   2536505 1 -  4500979 A
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    368654 1 -  1189296 a
i caeSp111.Scaffold626  I 1 C 0
s caePb3.Scfld02_0       4115639 1 +  4147112 a
i caePb3.Scfld02_0      I 1 C 0
s caeJap4.Scaffold18137    20750 1 -   658288 g
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11191527 0 + 21540570 C

a score=-744.000000
s ce10.chrX              5852567 2 + 17718866 AA
s caeRem4.Crem_Contig0   2536506 1 -  4500979 A-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    368655 1 -  1189296 a-
i caeSp111.Scaffold626  C 0 I 39
s caePb3.Scfld02_0       4115640 1 +  4147112 a-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    20751 0 -   658288 C
e cb4.chrX              11191527 0 + 21540570 C

a score=273.000000
s ce10.chrX              5852569 1 + 17718866 A
s caeRem4.Crem_Contig0   2536507 1 -  4500979 A
i caeRem4.Crem_Contig0  C 0 I 39
s caePb3.Scfld02_0       4115641 1 +  4147112 a
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    20751 0 -   658288 C
e cb4.chrX              11191527 0 + 21540570 C
e caeSp111.Scaffold626    368656 39 -  1189296 I

a score=-123.000000
s ce10.chrX              5852570 23 + 17718866 TTTTA-----TTGTTAACAGTTTCCTAA
s caePb3.Scfld02_0       4115642 28 +  4147112 attcagattcttctcagggttttattaa
i caePb3.Scfld02_0      C 0 I 8
e caeJap4.Scaffold18137    20751  0 -   658288 C
e cb4.chrX              11191527  0 + 21540570 C
e caeSp111.Scaffold626    368656 39 -  1189296 I
e caeRem4.Crem_Contig0   2536508 39 -  4500979 I

a score=0.000000
s ce10.chrX              5852593 375 + 17718866 AATCAATATCTTGTGACCTCATTATCTCAATTTGTTTTACTCAACATTTTTTACAGAAAACAAGAATATTTGATGTTAGTTACAAAAAGCCTAGAATGGATCTCGGCCTGTTTTTAAATCTCTTGATGGAAGCTTTTTTATTATCAGAAAATTTATAAGCAAGTCAGCTTTTTTTCGAGCTTTTTGAAGTTTTTTCAATGAAAGTTTCAGATTAAAATTTTTTCGGATTGTTTACTCTCTTTGTTCATTTCTAAAAAATTCAGTAGGCCGAATTTTAGGTTTCATTTTCATTGTACTGTTCCATTGCAAACTGGTATTGATGTTAAATTCAACATATCAAAAAAGCTATCATAAAACTATACAGTGAAACTTTTC
e caePb3.Scfld02_0       4115670   8 +  4147112 I
e caeJap4.Scaffold18137    20751   0 -   658288 C
e cb4.chrX              11191527   0 + 21540570 C
e caeSp111.Scaffold626    368656  39 -  1189296 I
e caeRem4.Crem_Contig0   2536508  39 -  4500979 I

a score=238.000000
s ce10.chrX              5852968 35 + 17718866 AAAAATATCCAAAATTTCGCAATTAGGGTCTTTCC
s cb4.chrX              11191527 29 + 21540570 aataa-----aaactttaaaaattagagCTTTTT-
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4115670  8 +  4147112 I
e caeJap4.Scaffold18137    20751  0 -   658288 C
e caeSp111.Scaffold626    368656 39 -  1189296 I
e caeRem4.Crem_Contig0   2536508 39 -  4500979 I

a score=-1140.000000
s ce10.chrX              5853003 34 + 17718866 ---AAAATGAATAATTATTTTACCAGTGATAAGACAC
s cb4.chrX              11191556 16 + 21540570 ---------AATGTTTATTTGCTCA------------
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18137    20751 36 -   658288 aagaagaaaaaaatctaacTGATCAACATTAAGATA-
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4115670  8 +  4147112 I
e caeSp111.Scaffold626    368656 39 -  1189296 I
e caeRem4.Crem_Contig0   2536508 39 -  4500979 I

a score=-182.000000
s ce10.chrX              5853037 14 + 17718866 AAAAAACTAAATGA
s caeJap4.Scaffold18137    20787 11 -   658288 ---AAATTTATCCC
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4115670  8 +  4147112 I
e cb4.chrX              11191572  0 + 21540570 C
e caeSp111.Scaffold626    368656 39 -  1189296 I
e caeRem4.Crem_Contig0   2536508 39 -  4500979 I

a score=180.000000
s ce10.chrX              5853051 1 + 17718866 T
s caeSp111.Scaffold626    368695 1 -  1189296 T
i caeSp111.Scaffold626  I 39 C 0
s caePb3.Scfld02_0       4115678 1 +  4147112 t
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18137    20798 1 -   658288 C
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11191572 0 + 21540570 C
e caeRem4.Crem_Contig0   2536508 39 -  4500979 I

a score=174783.000000
s ce10.chrX              5853052 240 + 17718866 TACCATCACAAAGATTTCTATAGATAAGATGTTTTGCAGATACAGCGAGCATCTTCCCATATTCCGTCATAATAGTGTAGAAATTATATCGGTTCTCCGGCTCGCGATGCATCCACGTTATAATTGGAGTGTAATACGTCTGGACGTGTCAAAACATTTT-CACGGAT---TGATGAATTGAA--TGCGTTAAGAATAAGAATTACTTACTGCGGTCAAGTTACCAGTCAGGACTAGATCCCCAAT
s cb4.chrX              11191572 232 + 21540570 TACCATCACACAGATTTCGATAAATCAAGTGTTTCGCCGAGACTGCCAACATTTTTCCGTACTCTGTCATAATTGTATGAAAGTTGTAGCGATTGTCCGGCTCACGATGCATCCATGATATAATTGGAGTGTAATACGTCTGGACAAGGGAGA--------CATTGAA---TAATTAATTGAATGTGCA--ATTCATGAAAAT-GCTCACTGCGGTCAAATTGCCAGTCAGAACCAAATCACCAAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536547 239 -  4500979 TACCATCACATAAATTTCGGTACACCAGATGCTTCGCAGAAACTGCCAACATCTTTCCATACTCCGTCATAATCGTAACAAAATTGTATCGGTTGTCCGGCTCGCGATGCATCCATGATATAATTGGAGTGTAATACGTCTAGACGtgtcgaaacatttttcattgaa---taatTAATCGAA--TGCA--ACTGAGAGGGATCACTCACTGCGGTCAAATTGCCAGTCAAGACTAAATCTCCAAT
i caeRem4.Crem_Contig0  I 39 C 0
s caeSp111.Scaffold626    368696 222 -  1189296 TACCATCACACAAGTTTCGATAAAGTAAATGTTTTGCAGATACAGCCAACATTTTTCCGTACTCTGTCATAATTGTATAGAAGTTGTACCGGTTGTCTGGCTCTCGATGCATCCAAGATATAATTGGAGTGTAGAATGTCT-GAAATAGCAAACAAATGATTAATAAA--GGAATTAAGGATA---------------------ACTCACTGCAGTCAGGTTACCAGTCAAGACTAAATCACCAAT
i caeSp111.Scaffold626  C 0 I 4
s caePb3.Scfld02_0       4115679 225 +  4147112 taccatCACAAAGATTTCTGTAAATCAAATGCTTTGCAGAAACGGCCAACATTTTCCCGTACTCTGTCATGATTGTGTGAAAATTGTATCTATTCTCCGGCTCTCGATGCATCCATGATATAATTGGAGTGTAATACGTCTAGACGTGTCAGagcgtttttcaatgaa---taattaATTGCA--TTC----------------ACTCACTGCAGTCAAGTTGCCGGTCAAAACTAAATCTCCAAT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    20799 231 -   658288 TACCATCACAAAGATTCCTGTAAACCAAATGTTTCGCCGTCACAGCCAACATTTTTCCATACTCTGTCATAATGGTATGAAATTGGTTTCGTTTCTCGGGCTCTCGGTGCATCCACGTTATAATTGGAGTGTAATATGTCTGGGAGCGTCAGATTGTTTCATAATTTGTTGTGATGGATTGAA--T-----AATTA--------ACTTACTGCGGTTAAATTGCCAGTAAGGACGAAATCGCCAAT
i caeJap4.Scaffold18137 C 0 C 0

a score=2197.000000
s ce10.chrX              5853292 4 + 17718866 TCCG
s cb4.chrX              11191804 4 + 21540570 TGCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536786 4 -  4500979 TGCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4115904 4 +  4147112 TGCA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    21030 4 -   658288 TGCG
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    368918 4 -  1189296 I

a score=92902.000000
s ce10.chrX              5853296 184 + 17718866 ACTTGATCCATTCGTTTCTTGCCACTTGGTGTGGTCATCCAAGAGTCGGTAGAAAAACAAGCATGACCATTTGTATCTAA-TTAATGAAAA-CTTATGA-------AACTTGGAAAAAT--ATAATGAATTTCAATACCTGAAAATGCAGGAAGTTTGAAATCTCTGACAGCATGTGCAGCCGTTTGTACTGAAA
s cb4.chrX              11191808 182 + 21540570 ACTTGATCCATTCGCTTTTTTCCAGTTGGTGTTGTCATCCATGAGTCAGTTGAAAAACACGCGTGGCCGTCGGTTTCTGTGAGAAACATAA-TTTgag--------aagtttaaaaaacagAGAAGAAGTT----TACCAGAAAATGTTGGAAGTTTGAAATCATGAAGAGCATGTCTGGCTGAGTCTACTGAAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536790 185 -  4500979 ACTTGATCCATTCGTTTCTTCCCAGTTGGTGTTGTCATCCATGAGTCGGTTGAAAAACATGCGTGGCCATCGGTATCT---AAaattaaag-tttaaaactgtATCAAGAtgacaaaac--aaaataaact----cACCAGAGAAAGACGGAAGTTTAAATTCATGAATGGCATATCTCGCAACGTCCACTAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    368922 176 -  1189296 ACTTGATCCATTCGTTTCTTTCCATTTGGTGTTGTCATCCAGGAATCTGTTGAAAAACACGCATATCCATCtggatctga-aaaacaatag-tttaatt----------ttgaagg-----aaaactAGTTTC--TACCAGGAAATGAAGGCAATTTGAATCCATCGATGAAGTTCCTTGCTGTGTCTGCTGAAA
i caeSp111.Scaffold626  I 4 C 0
s caePb3.Scfld02_0       4115908 181 +  4147112 ATTTGATCCATTCTCTTTTTACCAGTTGGTGTTGTCATCCAAGAGTCTGTTGAAAAACAGGCATATCCatcggattctga-aaaaaagtggaattaaCTGAG----AGGTTTCAGA-----CAAGGAAGTT----TACCAGAAAATGATGGTAATTTGAATCCATCAATAACGTTCCTCACGGTGTCTACTGAAA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    21034 183 -   658288 ATTTGATCCATTCGCTTCTTGCCATTGGGCGTTGTCATCCAGGAGTCGGTGGAGAAACAGGCGTGGCTTTCCGTATCTGG-gaaggatttt-tttaa---------aagttggtgatatg-aaagaaaatttgaatacCAGAAAAAGTCGGAAGCTGCCAATTCCCAATTGCATTTGTTGCCGCTTTaactgaaa
i caeJap4.Scaffold18137 C 0 C 0

a score=-4918.000000
s ce10.chrX              5853480 16 + 17718866 TTGTGATAATTTTTTG-------
s cb4.chrX              11191990  1 + 21540570 ------T----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2536975 10 -  4500979 ------CAAGTTTTTG-------
i caeRem4.Crem_Contig0  C 0 I 66
s caePb3.Scfld02_0       4116089 10 +  4147112 ------CTAGTTTCTG-------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    21217 10 -   658288 -------------ttgaaattta
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    369098  0 -  1189296 C

a score=-16314.000000
s ce10.chrX              5853496 112 + 17718866 ATAGAATAGTTCACTTAAAAGTAGCTTTTTCAGAATAGTAATGATATCCAAACAAGATCTGTCCAATTTTTGGATTTCAATCCTACTTCGTGGCATTTTAA-CTGCTGTTTTT
s cb4.chrX              11191991  53 + 21540570 ------------ACAAAATCGAACAAT-TTTgcatt-ttaataat----------------------tttcagttg------------caTAGAAAtcttg------------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4116099  80 +  4147112 -TTGTGATGTTCATTAAAACGATGGATATTCGTGAT-GTCATagtg--caaaaaatattgttgcTGGCTTCTGATG-------------ATAGAATT----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    21227  86 -   658288 -------atattttttaaaagatttttacTATTGAG-GTATTATTGATCTGACTATGTTTGCAGCCTTTTCT----------------CAGCGCATTCCGGGCTGATTTT---
i caeJap4.Scaffold18137 C 0 I 242
e caeSp111.Scaffold626    369098   0 -  1189296 C
e caeRem4.Crem_Contig0   2536985  66 -  4500979 I

a score=-1755.000000
s ce10.chrX              5853608 42 + 17718866 TCCATGAAAGTATAAAATGTACaa--aatttaaattt---catattt-----------
s cb4.chrX              11192044 37 + 21540570 -----ggaaaaaaaaatgttgcaa--aagttatatac---aaaaatt-----------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4116179 51 +  4147112 -------GAACAGCAATTTTTTAAGTAATTTTTATacggaaaaaatttatcaaaatgt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    21313 242 -   658288 I
e caeSp111.Scaffold626    369098  0 -  1189296 C
e caeRem4.Crem_Contig0   2536985 66 -  4500979 I

a score=-8691.000000
s ce10.chrX              5853650 67 + 17718866 tattttttttatattataaCCATAAAAAGAAGAAAGTATTTTGGATTAGTTAGACTAGGCACTAGAT
s cb4.chrX              11192081 31 + 21540570 t-aagtttgaaaattttttttag--------------gctCTGGAA---------------------
i cb4.chrX              C 0 I 50
s caeSp111.Scaffold626    369098 38 -  1189296 CACGTTTTGTATATC----------------------Attctgaacaga-------aaaaatatgat
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4116230 56 +  4147112 --tagttaggaaaccttgaaaaaa--------aaagtgttccgCACAAGTCATA-TAGACATATGAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    21313 242 -   658288 I
e caeRem4.Crem_Contig0   2536985 66 -  4500979 I

a score=-4426.000000
s ce10.chrX              5853717 68 + 17718866 ATTAAATTTTTATCTGAGAATTGGGAAAAAGGAAGAAAAAACAGTGGTAATTAAA--AATTTCAGAAATG
s caeSp111.Scaffold626    369136 21 -  1189296 ---------------------------------------------tatCATTTAATTAAGTCtgga----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4116286 30 +  4147112 A----------ATTCAAGATATGG---------------------GATCATCAAATAAACT---------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    21313 242 -   658288 I
e cb4.chrX              11192112 50 + 21540570 I
e caeRem4.Crem_Contig0   2536985 66 -  4500979 I

a score=-920.000000
s ce10.chrX              5853785 13 + 17718866 GCCGACTTTTCAA
s cb4.chrX              11192162 11 + 21540570 -atcggtttctg-
i cb4.chrX              I 50 C 0
s caeSp111.Scaffold626    369157  9 -  1189296 ---ggttttttg-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4116316  9 +  4147112 ---GACTTTccg-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    21313 242 -   658288 I
e caeRem4.Crem_Contig0   2536985 66 -  4500979 I

a score=-86905.000000
s ce10.chrX              5853798 271 + 17718866 AGC---------CATGCAAAACATGTGTGCTGCCGAAAAAAAAGTGTTT-TTCCGAAAATCCCAT---------CGAATTTCAGGCGTAGATACATTGATGCA----------------AAA-------TCGTTTTTTAAAGCTAAAA---GTATCAAAAAAGA----------------AAAAGAAGGTTTGAGTCTAAT--GAGGAAATACTTAACGTTTAAAAAT-----TAACACAAATT--TCTGCAATTTAACT-----GATGTACTTATG-----------------------TACATGCACTGA---------------------TGAAAAAACAACTTCAATTACTATCTTATTAACTATTTGATGGTTA----------CTTCTACTTTA-
s cb4.chrX              11192173 252 + 21540570 --------------tgagaaatac-------------taaaaattgct--aactgataaatttat---------caaaatat---tacAAAGAATTTGATCaatt--------------gat-------tcatttttcatatcttgcatataagtcaagaaaaa--ttgattacaATTTCACATTGAggggttcttctatt--acaggt---tttactatTTATACAGTTTTCTTAGACTATTTGCTTTACAAAGTAGGT------AAAAATTTGCG-----------------------------------------------------------CAAAATTTGATAAAtgaa-attttatca--tttcttCTAATTA-----------TCCCactttt-
i cb4.chrX              C 0 I 7
s caeSp111.Scaffold626    369166 127 -  1189296 -------------------aaatc-------------aatataaagcttgaaataaaaacataat---------cGAATTA-------Atgga----ga--------------------aat-------tgattttctttatGCCAAAGAGGactttgaaaa-----------------------------------------caagat---tttaTC----AATCTG--CCCGcaaaatgttt--cattctAAACGA-----------------------------------------------------------------------------------------------------------------------------------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4116325 218 +  4147112 --------------ttcaaaaatc-------------aaaacactgATTTAacagaaattttgtt-----tttatgcaTTA-------AAGTAACATGA--------------------AATCTCCctgtaatttttaaaatttgagatAGTAtttagggaaaa----------------aaacaaagaag-------aat--caAGATGTATTTATCGTTGGAGTAG--TTCGAcaagaaatt--tatgaaaaataga-------aagaataTAGG-----------------------------------------------------------AAATACGTGTTCACTAAC-ATCTTACTA--CATTTTGTG--------------------------
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18137    21555 385 -   658288 agccattttcaacaggtgaaatgcggtggatg-----catatagtgtccgtatttgaatcattcCGTGCATTTATGCATATCAGACTCTAGAACGTTCACACGTTTTACTAACTTAGCCaaa-------aagatcacgaaatttaagaaagttagtggtaaaaaaatcagtaagaaaagtgaaaaaaggggGCGGCGAAGTTGCCAAATGTCACAAGCGTGTGTAGAA--ATGTataatatctt--tcttatagtTCAATGCAATGAATCATATGGgtgatatgattcaaatacggactctatatgcatccaccgccacacagctgcctaTTTCGGCTAAAccagttccaaaaaaattccactgtTTGGTGGGAGGCTAGCAGAGCCAGCAAGGACCATAA
i caeJap4.Scaffold18137 I 242 C 0
e caeRem4.Crem_Contig0   2536985  66 -  4500979 I

a score=56432.000000
s ce10.chrX              5854069 437 + 17718866  
s cb4.chrX              11192432 403 + 21540570  
i cb4.chrX              I 7 C 0
s caeRem4.Crem_Contig0   2537051 434 -  4500979  
i caeRem4.Crem_Contig0  I 66 C 0
s caeSp111.Scaffold626    369293 413 -  1189296  
i caeSp111.Scaffold626  C 0 I 6
s caePb3.Scfld02_0       4116550 462 +  4147112  
i caePb3.Scfld02_0      I 7 I 17
s caeJap4.Scaffold18137    21940 338 -   658288  
i caeJap4.Scaffold18137 C 0 C 0

a score=-1159.000000
s ce10.chrX              5854506 16 + 17718866 ACGTAGTAGACAAATT
s cb4.chrX              11192835 15 + 21540570 ACGTGTTAGAT-AATT
i cb4.chrX              C 0 I 4
s caeRem4.Crem_Contig0   2537485  9 -  4500979 ACGGG-------AATG
i caeRem4.Crem_Contig0  C 0 I 4
s caeSp111.Scaffold626    369712  9 -  1189296 ataga-------aatt
i caeSp111.Scaffold626  I 6 C 0
s caeJap4.Scaffold18137    22278  5 -   658288 -----------aaatt
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4117012 17 +  4147112 I

a score=149541.000000
s ce10.chrX              5854522 564 + 17718866  
s cb4.chrX              11192854 652 + 21540570  
i cb4.chrX              I 4 C 0
s caeRem4.Crem_Contig0   2537498 560 -  4500979  
i caeRem4.Crem_Contig0  I 4 C 0
s caeSp111.Scaffold626    369721 650 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4117029 609 +  4147112  
i caePb3.Scfld02_0      I 17 C 0
s caeJap4.Scaffold18137    22283 517 -   658288  
i caeJap4.Scaffold18137 C 0 I 38

a score=-378.000000
s ce10.chrX              5855086 33 + 17718866 GAGAAAG-CTTCATGTCAAAG-AAAATTGTGTCTG
s cb4.chrX              11193506 15 + 21540570 ACG-----AATAATGTCA---------------CT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538058 27 -  4500979 AAG-----AAGcatgtcaaa--aaaattgtgt-tg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    370371 33 -  1189296 GGAGAGCTCTTCATgtcaaag-aaaattgaga-tg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4117638 29 +  4147112 AAG-----CTTCAtgtcaaagaaaaattatga-tg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    22800 38 -   658288 I

a score=10765.000000
s ce10.chrX              5855119 17 + 17718866 G-CCGCAAAATAAGTGGT
s cb4.chrX              11193521 16 + 21540570 G-ATG-AAATTAAGTGAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538085 16 -  4500979 g-cCG-AAAATAAGTGGT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    370404 17 -  1189296 gCCCG-AAAATAAGTGGT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4117667 16 +  4147112 G-AAG-AAAATAAGTGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    22838 17 -   658288 G-TCGCAAAATAAGTGGa
i caeJap4.Scaffold18137 I 38 I 9

a score=-7338.000000
s ce10.chrX              5855136 49 + 17718866 ATCGGATTGGTGGTGGTGGTGATGG----GCTGCTATTT---CG-------------AGAGAAAGAAGA
s cb4.chrX              11193537 47 + 21540570 A------AGTTGGAAGGTGTggaga----actttttttt---aa---------tgcgATTGGGGGAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538101 48 -  4500979 A--------TCGGTAGAGGTGATGG----GTCTTTTTTcctgag---------agaaaaaagatgaaga
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    370421 49 -  1189296 A--------GTGGTGGAAGG---------gtggtttttg---aagagaagatgaagaagaagaagagga
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4117683 46 +  4147112 A--------TCGGAAGATAGAAAAGCgttgggttttttg---aa------------attgagaattagA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    22855  9 -   658288 I

a score=102906.000000
s ce10.chrX              5855185 298 + 17718866 GTCCGTCCGATTGGGTCGGGTTGGTCTTCCTGTCGTCACACG----------CGGA-CAGAC----AAGAAGACGGATTGC---GCAGGAAAAG------------GAGAAGATCATGGTTGTCAA---------------------------------------TTGCAT-------TGCACCGT-TTTCTCGT----------------GGGGAGT----GTATGAA--TGTAAAGAT------------ATCATTTCC----TTATCATCTGTG-AAAACTTACTTCGCCC-TTTCGTATTTC---TTTTT---CTACCAACTATTCATC-AAAAATG--CTGCAGGAATTAGGCCAAG-TTGGT--------CT-----TCTTCTCACGCCTTCATCTTGACTACATTTTTGCCTA-------TTCA----------ATTGGTCC-ATTTTT----
s cb4.chrX              11193584 316 + 21540570 GTTATTCT------------------T-----TCGCCACATTTC---TCGAGAAGGGCAGACGGAAAGGAAGATGGATTGC---gcaggaaaag------------gagaagatca-------------------------------------------------TTGCTT-------TGCACCGTATTTCTCATGGTGGtagcgggggggggggggt----gtatGAATGTGTAGAGATA---TCAACCGTATCATTTTC----TTATCATCTGTGAAAAACTTACTTCGCCCTTTTcgcacttctttttttttggctaccagc-atttttc-aaaaatgtatttacGGAATTAGGCCATC-TGTAT-CTTTTCATGAATTATCTTATtaagacattt-----tgaaaattcgaattcc-------ctcA-----------TAG-----ATTCTT----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538149 310 -  4500979 gtCCCTCTA--CTGATGCTATTGGTCT-----CCGCCACACC----------GGGAGTAGAC----AAGAAGACGGATTGC---gcaggaaaaaaaggaaaaaaacgagaagatcATGGTTGTCAG---------------------------------------TTGCAT-------TGCACCGT-TTTCTCGT----------------GGGGAGT----GTATGAA--TGTAAAGATA---TCAACCGTATCATTTCC----TTATCATCTGTGAAAAACTTATTTCGCCC-TTTcgcacttctttttttt---ctaccaactattcatc-aaaaatggcTT--AGGAATTAGGCCAACGTCTAC-CTTCCCACG-----TCTTTTCTCGCCTTTT-----ATTAAATTTGA------------CCTA-----------TCG-----ATTTTT----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    370470 309 -  1189296 gtcCGGGC----TGATTCCATTGGTAT-----CCGTCACACA----------CGGGACGGAC----AAGAAGACGAATTGc---gcag----aa------aaaatggagaagatcATGGTTGTCAA---------------------------------------TTGCAT-------AGCACCGTTTTTCTCGT----------------GGGGAGT----GTATGAA--TGTAAAGATA---TCAACCGCATCATTTCC----TTATCATCTGTG-AAAACTTACTTCGCCC-TTTCGCACTTC---TTTTTA--CTACCAActattcatcaaaaaatg--ttgaaagaATTAGGCCATCATCGGTTTTTCTCACG-----TTTCTTCTCGCCTCTCC---GTTTACATTCCAACCCC-------TTCA-----------TAACtgg-atttca----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4117729 314 +  4147112 GTTTG--------GCTATTACTGGTCT-----CGGTTACACA----------AGGG-TAGAC----AGGAAGACGGATTGc---gcaggaaaaa------aaaacggagaagatCATGGTTGTCAA---------------------------------------TCGTAT-------TGCACCGTTTTTCTCGT----------------GGGGAGT----GTATGAA--TGTGGAGATA---TCAACCGCATCATTTCC----TTATCATCTGTGAAAAACTTACTTCGCCC-TTTcgcacttcttttttttt--ctaccaactattcatc-aaaaatg--ttgaaggaATTAGGCCACTATCGGC--------CG-----TCTTTTCTcgccttttt----ccaaaattctaaGCTA-------TCAATTGTGATCCGCTAAgtgtcattttc----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    22864 342 -   658288 -------------------------gt-----ccgcccaACTTCTGATTGGGCGAG-CGAAA----CTGAAGACGGATTGCTATGCGCATAACG-----------GGTGGAGATCACGGTTGTCAACTTGTGGACGgactgactgactgactgactgctggttggctgcctgactggctgCACCGT-TTTCTTTT----------------TACGAGTGTACGTATGAA--TCTAAAGATATCTTCCACCGtatcaatttcttttttatcatCTGTG--AAACTATCCTCGCCCTTTTCGCACATC---TTTTTC--CTACCAACAACTCATC-AAAAATG--CTGTAGGAATTAGGCCAAC--GAAT--------CA-----TTTTCTCAC------------TTGACACTTCACTTTACACGGCTTTCA-----------TTG-----ATTTCTTTTT
i caeJap4.Scaffold18137 I 9 I 21

a score=-5190.000000
s ce10.chrX              5855483 22 + 17718866 CAAATCAGTTTTGGCTTTGACT
s cb4.chrX              11193900 11 + 21540570 GTTGCTT--TTT---------G
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538459 13 -  4500979 GAAGTCTcgttt---------t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    370779 16 -  1189296 aaagttcaagtC------GCgt
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4118043 13 +  4147112 aaagttcaggtt---------t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    23206 21 -   658288 I

a score=178416.000000
s ce10.chrX              5855505 300 + 17718866 TTTTAAAATTAAAAAATC-----GAAAAGCAGATCCCAAG-------------CC-CCCTTGGA-CGTTTCCCCACCGGTAATCATACACCAGCGTCAGGCG-CTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGCCTCGTTTCGAAGCCGCACCAGCTAACC-TGGTATCACATAATATACTTTTGGCAACTT------TCTTCGAAACCC----------------------------GACTTTCTTC-AGCTAGTT-------TTACCCACCCACAAAATCTCGCTTCGTTCGAGATATTTAGGCTTGTGT----GTGTATGTATTTTTTTTTTCTATGATATGTGGTAGTGTGATT
s cb4.chrX              11193911 315 + 21540570 ctttgaaatcaaaacattgggggggAAAATAGATCCCAAGAAAAATAGATCCCAAGTTCTCGGA-CGTTTCCCCACCGGTAATCATACACCAGCGTCAGGCG-CTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGACCCGTTTCGAAGCCGCACCAGCTAACC-TGGTATCACATAATATACTTTTGGCAACTCTCTCTATCTTTTCACCTTTCGGCCCTTGTCAACCgcgtttttccaattcttctttc-attttctc---------tcccGG---------CTCTGATCGTTCTAGATCTATGCTTTTTA----------------------------TGACAA---ATAGTTTGATG
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2538472 274 -  4500979 ctccaaaattaaaaaatcg-------aaaaagatcCCAAG-------------CGGCTCTTGGA-CGTTTCCCCACCGGTAATCATACACCAGCGTCAGGCG-CTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGCCTCGTTTCGAAGCCGCACCAACTAACC-TGGTATCACATAATATACTTTTGGCAACTT------TCTTTccacctt----------------------------ttcttttttt-ttcttctc---------aacatC---------CATCATTCGTTCTAGATCTTTATTCTTTATC----AGTTAA-----------ACCGGTGATGT---GTAGTGTGATT
i caeRem4.Crem_Contig0  C 0 I 43
s caeSp111.Scaffold626    370795 292 -  1189296 gtttgaaattaaaaaatccgGGGGAAAAATAGATCCCAGG-------------TGGCTCTTGGACGTTTCCCCCACCGGTAATCATACACCAGCGTCAGGCG-CTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGCCTCGTTTCGAAGCCGCACCAGCTAACC-TGGTATCACATAATATActtttggcaactttct---ttttcccatctt-------------------ttctttctgcccccctttcaaacttctt-------tcacccgg---------tttttctcgttctAGATCTTCATCTCTTGAC----G----------------TTCTCTGATAT---GTAGTGTGGTT
i caeSp111.Scaffold626  C 0 I 61
s caePb3.Scfld02_0       4118056 290 +  4147112 tcttgaaaattaaaaatc---aggaaaaatagatCCCATG-------------TGGCTCTTGGA-GCCTTCTCCACCGGTAATAATACACCAGCGTCAGCAGTCTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGCCCCGTTTCGAAGCCGCACCAGCTAACCTTGGTATCACATAATATACTTTTGGCAActttc-----tttcaaacctt-------------------ttttctccccccttccttc-aacttctt----------ctctg---------atcctttcgttctAGATCTCCGCTCttcatc----atttcg----------tttttctgataT---GTAGCGTGGTT
i caePb3.Scfld02_0      C 0 I 7
s caeJap4.Scaffold18137    23227 287 -   658288 tctcaaaattaaaaaatacggGGG-------GATCCCAGG-------------TGAGTTGGGCG-CTTTTCCCCACCGGTAATCATACACCAGCGTCAGGCG-CTCTTATCTTCCGCGACAGGGCATCCGAATGAAATTTGAGCCTCGTTTCGAAGCCGCACCAACTAACC-TGGTATCACATAATACACTTTTGGCAACTT------TCTTTTCGCCTC------------------ATCCTTACACTTTGATTTTC-ACCTTCGTTTAGGAATTGCGACA---------GACTATTCATTC---ATTTCTAATCTTTGAATGAGATGTAC------------------ATAT---ATATTTTGATC
i caeJap4.Scaffold18137 I 21 C 0

a score=2287.000000
s ce10.chrX              5855805 11 + 17718866 CAAATAGTTTA
s cb4.chrX              11194228 10 + 21540570 -GATTAGTTTC
i cb4.chrX              I 2 C 0
s caePb3.Scfld02_0       4118353  7 +  4147112 ----TAGTTTC
i caePb3.Scfld02_0      I 7 C 0
s caeJap4.Scaffold18137    23514 11 -   658288 CGgatagttta
i caeJap4.Scaffold18137 C 0 I 59
e caeSp111.Scaffold626    371087 61 -  1189296 I
e caeRem4.Crem_Contig0   2538746 43 -  4500979 I

a score=-3435.000000
s ce10.chrX              5855816 18 + 17718866 AACA--------------------CACACCCCCCCCCC-
s cb4.chrX              11194238 38 + 21540570 TACAAATCGGATATGGTGCTGTATTTAATA-CCATTTCT
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4118360 20 +  4147112 TTTA------------------GTCCAATGCCcacttc-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    23525 59 -   658288 I
e caeSp111.Scaffold626    371087 61 -  1189296 I
e caeRem4.Crem_Contig0   2538746 43 -  4500979 I

a score=-3055.000000
s ce10.chrX              5855834 19 + 17718866 CCCCCTCCTTAATTT----CTAT
s cb4.chrX              11194276  6 + 21540570 ---------CGTTCT--------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538789 15 -  4500979 CCATTTTCCTGGTTT--------
i caeRem4.Crem_Contig0  I 43 C 0
s caePb3.Scfld02_0       4118380 10 +  4147112 ---------tattcttttt----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    23525 59 -   658288 I
e caeSp111.Scaffold626    371087 61 -  1189296 I

a score=4533.000000
s ce10.chrX              5855853 18 + 17718866 TGAGATGCCAATCCCGGA
s cb4.chrX              11194282 17 + 21540570 TGAGC-ATTAAATCTGGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538804 17 -  4500979 TGAAA-GATAATTCGGGA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    371148 15 -  1189296 TGAGA---TAAATCCAGA
i caeSp111.Scaffold626  I 61 C 0
s caePb3.Scfld02_0       4118390 17 +  4147112 tgaga-tctaAGCCCGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    23525 59 -   658288 I

a score=44204.000000
s ce10.chrX              5855871 166 + 17718866 TTGA-------ATCCTGGAAGAAAAAATTAATCCCGTCTGA---GGTATTAGGTCTATACAT--TTTT--GCATCTTTC----------GGTTGCACTAG----TTGTTTCAGTCGGC---GTAATCTC-TTTTTGATAAGGGATTGACTCAAGGTTTTC-TATGATTTACGAC----CTAAAGGAAAG----ATACCA-GAAAACTC
s cb4.chrX              11194299 182 + 21540570 TTTAGATAGTGAACCTGGAACAAGAAATTAATCTGGTCTGA---GAT-GGAAGACTCTTTTT--TGTCACGCATTCTTTT-------TGGAGTACACTGGTTG-TTGTTTTAGTGGCAGACGCAATCTG-TCATTGATA-----GTGAGTCAAGGTATTCTGATGATTTACGACGAGGCCAATCGAGAA----ATACCA--CAAACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2538821 161 -  4500979 TTAA-------ATTTTGGTAGAAGAAACTAATCCTGTCTGA---GGTCTGAAGTCCATTTAT--T-----GCATTCTTTT---------GGTTGCACTGGAGG-TTGTTTAAGGGGTA--------TTC-TTTTTGATAAGGG-GTGACTCAAGGTTTTC-GATGATTTACGAC----CTAGATGAGAG----ATACCA-GTAAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    371163 168 -  1189296 TTGA-------GccctggaagaagaaattaatCCTGTCTGA---AGTTCTTAGCCTAAAAACGAC-----GCATCGGTTT---------CATTGCACTGGTGG-TTGTTTCAGCCGAC---GTAATCTC-TTTGTGATAATAG-GTGACTCAAGGTTTTC-TATGATTTACGAC----CTAGATGAGAG----ATACTG-GTAAACTC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4118407 163 +  4147112 TTGA-------ATCCTGGAAGAGAAGACTAATCCTGTCTGA---AATCCTAAGTTCGTTACT--C-----CCATTGG--------------TTGGACTGGTGGtttttttCAGCCGCC---GTAATCTCGTGTATGATAAGGG-GTGACTCAAGGTTCTC-TATGATTTACGAC----CTAGATGATAT----ATACCA-GTAAACTC
i caePb3.Scfld02_0      C 0 I 1014
s caeJap4.Scaffold18137    23584 167 -   658288 ttga-------a----aaacgaaaacaaaaatcttgAAGGAATTAATTTTCACTTCCTATTT--T-----GCACTTCTCCGAGCCGGCAGACAGCATAAG----TTGTTTTAATCAAC---GTAA-TTC-TTCACG--------ATGAC-CATGACTTGT-TATTATTTACGAG----CCAGATTAGAGGTGCATACTACGAATACTA
i caeJap4.Scaffold18137 I 59 C 0

a score=910.000000
s ce10.chrX              5856037 1 + 17718866 T
s cb4.chrX              11194481 1 + 21540570 T
i cb4.chrX              C 0 I 801
s caeRem4.Crem_Contig0   2538982 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    371331 1 -  1189296 T
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    23751 1 -   658288 T
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I

a score=-2273.000000
s ce10.chrX              5856038 10 + 17718866 ACTGACAAT-------T
s caeRem4.Crem_Contig0   2538983 17 -  4500979 CATTACAATTCATTTGC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    371332  3 -  1189296 ----AC----------C
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    23752 10 -   658288 TCTAACCGT-------T
i caeJap4.Scaffold18137 C 0 I 28
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e cb4.chrX              11194482 801 + 21540570 I

a score=-3521.000000
s ce10.chrX              5856048  60 + 17718866 TGATGAAGAAA------AGCGAAATTTATC-----------ACTT-------------------------------------------AGTCTGATAACAAAAATGTTGGGTAGTAATTT
s caeRem4.Crem_Contig0   2539000 115 -  4500979 CGTCGAAGAAAGGGGAgacaaaaatatttcacacttaaaagttttcacaaaatatcTGAGAGGGAGGCGATCAGAATGAAGGCACACCTGTCTG-----CGATAATATGGAAAACAATTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    371335  53 -  1189296 TATCGATATGA------ACaagaatgtttc-----------tttt------------------------------------------ttgactg--------TATTTTGGAGgacaattc
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e caeJap4.Scaffold18137    23762  28 -   658288 I
e cb4.chrX              11194482 801 + 21540570 I

a score=-14213.000000
s ce10.chrX              5856108  64 + 17718866 TTTAATTTCAAATTACGGTACTTATAG----------GTTCAGTTCC------------------CAAGTTATTTAAGTATTTTT---------------ATTT--TCA
s caeRem4.Crem_Contig0   2539115 106 -  4500979 GTCAAGC---GACAAAGACACTTACAGAAAACCACATTTTCACTTATCGTAGTGAATGAATACAGTAATTCATTTGAGAATTGATAAAACATACaccaaaattcaatca
i caeRem4.Crem_Contig0  C 0 I 19
s caeSp111.Scaffold626    371388  34 -  1189296 ttc----------------------------------ttcttctt--------------------tgattgGTCTaggtttttat---------------------tca
i caeSp111.Scaffold626  C 0 I 112
s caeJap4.Scaffold18137    23790  35 -   658288 --------------------------------------TTCAACTACCAATAC------------CAGTACATTCTATAATCGCA------------------------
i caeJap4.Scaffold18137 I 28 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e cb4.chrX              11194482 801 + 21540570 I

a score=817.000000
s ce10.chrX              5856172 29 + 17718866 GGATTACTGCAATTTTGTGCTAGAAAATA
s caeRem4.Crem_Contig0   2539240 20 -  4500979 ---------CAATGTTGTGTtggtggtta
i caeRem4.Crem_Contig0  I 19 I 106
s caeJap4.Scaffold18137    23825 20 -   658288 ---------GACTTTagtgttgaaaaaaa
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e cb4.chrX              11194482 801 + 21540570 I
e caeSp111.Scaffold626    371422 112 -  1189296 I

a score=-2109.000000
s ce10.chrX              5856201 65 + 17718866 AATAAATGTTAGCCATTTTTGACAAAGGAAGTAATATTTCCGAATAAACCAGCACCGTGAAGAGA
s caeJap4.Scaffold18137    23845  3 -   658288 ga--------------------------------------------------------------a
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e cb4.chrX              11194482 801 + 21540570 I
e caeSp111.Scaffold626    371422 112 -  1189296 I
e caeRem4.Crem_Contig0   2539260 106 -  4500979 I

a score=-299.000000
s ce10.chrX              5856266 17 + 17718866 GGAAAAAAGGGGCAGCA--
s cb4.chrX              11195283 17 + 21540570 GGCAAAAAATCTTGGAA--
i cb4.chrX              I 801 C 0
s caeJap4.Scaffold18137    23848 19 -   658288 ggaaggaaggagaAGATTT
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4118570 1014 +  4147112 I
e caeSp111.Scaffold626    371422 112 -  1189296 I
e caeRem4.Crem_Contig0   2539260 106 -  4500979 I

a score=939.000000
s ce10.chrX              5856283 4 + 17718866 CCAT
s cb4.chrX              11195300 4 + 21540570 CCAA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4119584 4 +  4147112 CCAA
i caePb3.Scfld02_0      I 1014 C 0
s caeJap4.Scaffold18137    23867 4 -   658288 TCAC
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    371422 112 -  1189296 I
e caeRem4.Crem_Contig0   2539260 106 -  4500979 I

a score=910.000000
s ce10.chrX              5856287 1 + 17718866 T
s cb4.chrX              11195304 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    371534 1 -  1189296 t
i caeSp111.Scaffold626  I 112 C 0
s caePb3.Scfld02_0       4119588 1 +  4147112 T
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    23871 1 -   658288 T
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2539260 106 -  4500979 I

a score=39963.000000
s ce10.chrX              5856288 250 + 17718866 AAAAAACGA-TTTGATCCGTACATAAAATCCGATTTGGAGCAAACTG--GAAACATGACGAAATGAAT--TTTGT----------------------------------GTCTACCAATAAGATCAAGA------------CATTCT---TCCAGTTTCCAACAGC-AGACACGCTCATCTTC-TGACTAATCCGTACTTTTGAGTGTATTGATATTTGATCACGA-----CGTCTAGT---CTTCCAAAAGCGTCGCTGAACTCATTGAAATCAAATTCCCAAATTCTCAAAACCAATGCACAATTGGTGTGT
s cb4.chrX              11195305 267 + 21540570 AAAGAGCAA-ATTGATCCTTACGCTAAAGTAGATTTAgatcaaaaaa-cgaaacatgACATGTAGTATAGTTTGTGACATGTTCCCTTT---------TTACTTCTCATTTCCACCAACAAGATCAAGACGATG-----TCCATTTTCTCTGCAACTTCCAACCCCTAGACGTGCTCATCTTC-CAACTAATCCGGACTTTTGACCAG------------ATATAG-----CGTCTAGTTACTTCCAAAAAGTGAGAATGGACTGAGTGGAATA-------------CCAGAAACTAAtgcacagatttttttt
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   2539366 265 -  4500979 AAAAATCGGCATTGAGCCGTAGGTTTAAGTagatttgaattaaaaaattgaaacatgacGAGATGAATAA-TTGTGACAAGCTCTTCCTCCGGCCAGCTTACATGTC--TCCTTCCAACAAGATCATGACGAT------TCCACTCT---TACAACTTCCAACACC-AGACGTGATCATCTTTGCGACTAATCCGTTCTT---------------------TGCAA-----TGTCTAGT--CCTTCCAAAAGTACTCGTAGACTCATTGAAATCAA--------ACTCTTGTCACCAATGCACAAAGCGTAGTT
i caeRem4.Crem_Contig0  I 106 I 3
s caeSp111.Scaffold626    371535 280 -  1189296 aaaaa-ccattttgaTCCATACGCCTAAGCAGATTTAGACTCGGAAA-TGGAATATGACGAGTTATATAGTTTATGACAAGCGCGCCCTCAGATTAA-GCGTGCCCC--TTCTTCCAATAAGATCAAAACGTAGACGCTCCCATTTC---TGCTACTTCCAAAACC-AGACGTGCTCATCTTC-TGACTAATCCGGACTTTTGAGTAT-----------AATGTAAAAGCATGTCTAGC-TcttcaaaaagatgaatttgGACTCTTTGAAATGCA-----------CATAGCATCGGTGCAC-AATCGTAGTC
i caeSp111.Scaffold626  C 0 I 1
s caePb3.Scfld02_0       4119589 277 +  4147112 AAAAACCCACTTTGATCCATACGCTTAAGCAGatttagatcaaaaaa-tgaaacatgacGAGATATATAGTTTATGACAAGTGAGCTCTTC--------TTCGCATC--GTCTTCCAACAAGATCAAAACGTTAAC---CCCGTTTT---TACTACTTCCAAAACC-AGACGTGCTCATCTTC-TGACTAATCCGGACTTTTGAGTAT------------TTGTAGAAGCTTGTCTAGT-ACTTCCTAAAGATGTGTATGAACTCTTCTAAATCAAA-----AGAAGCTTGAAATCAATGCACAAAACTTAGTT
i caePb3.Scfld02_0      C 0 I 1
s caeJap4.Scaffold18137    23872 164 -   658288 ----------------------------------------GAAAGAA-TTTGAGCTGGCG--------------------------------------GTGCACGCC--ATCCATCTACCAGATTAGACT---------GCTTGTTT---TACAACCTCTA---CC-AGACATGCTCATCTCC-GGATTAATCCGTACTTTTCACTTC-----------ATCGT-------CGTCGTGC--------AGAAGCGTCATTAAGTCTAGCCGCACCAA---------------AAACCAGGACCC-----------
i caeJap4.Scaffold18137 C 0 C 0

a score=-9204.000000
s ce10.chrX              5856538 32 + 17718866 ATGGATGTTAACCGAAA---GGTTTCAAATCAAAA
s caeRem4.Crem_Contig0   2539634 29 -  4500979 ------ACTAGCTGCAACCTCATCTCCAAAAAAGG
i caeRem4.Crem_Contig0  I 3 I 24
s caeSp111.Scaffold626    371816 11 -  1189296 --------------------GG----AGGGGAAAT
i caeSp111.Scaffold626  I 1 I 8
s caePb3.Scfld02_0       4119867 15 +  4147112 --------------------TGTGTTGGGAGACAT
i caePb3.Scfld02_0      I 1 I 8
s caeJap4.Scaffold18137    24036 14 -   658288 --------------------GGTTTCAATGAGTC-
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11195572 52 + 21540570 I

a score=102469.000000
s ce10.chrX              5856570 248 + 17718866 ---CAAA--AACTTTGTA----ATAACTCATTTTTG---TCCTCCTCTC------CAA------TCTTCTTCCTCTCCTACCGATATA--ATCACACG----CAAGAAGAA-TTATGCATGACGGTTATATGCATA-----TTGAGATAATCAAC-----TATTGTTGAATAGGTACATGATTTACAACCGTTCGCCCCCCAGTAT-ACT-CGGTA-TCCATCTGAAAACTGATCAATTGCC-A-TCATCTTGTAGGTCGC-----CGACAATA--GTACCGTACCGGAACCGTGATAAGT
s cb4.chrX              11195624 250 + 21540570 ---TAGA--AG---AATATATTAAGAATCATAT------CCACCAATAC------CA-------------TGCGCCCCAATTGATATG--ATCACACT----CTCGAAGAATTTTTGTATCTCGCTGATATGCATATATTCTTCTGATAGTCAGCGCG--GATTGTTGGGTGAGTAGGTGATTTACAACCGTTCTAC-GCCGGTGT-CCG-CAGTATTCCACCTGAAACTTGATCAATTGCCAA-TCATCTTTTAGGTCGC-----CGACAA-AACCTACCGTACCGGAACTATGGTGGGT
i cb4.chrX              I 52 I 45
s caeRem4.Crem_Contig0   2539687 213 -  4500979 ---------AG---AGTA----GCGACTCAT-----------CCAAACC------CA-------------------------GATATA--ATCACACT----CGGAAAGAA---CTATGTGTCGGTGATATGCATA-----TTGTGATAATGAACGCTACGATTGTTGGATAGGTAGGTGATTTACAACCGTTCG---TCCAGTGT-CCG-CGGTa-tccatctgaaatttgatcaATTGCC-A-TCATCTTGTAGGTCGC-----CGACAA-A--CTACCGTACCGGAACTGTGATACGT
i caeRem4.Crem_Contig0  I 24 C 0
s caeSp111.Scaffold626    371835 236 -  1189296 ---CAGATTGA---TGCA----ATAATCCATA---------CCGCGATC------CAA--------AGTTTTGCCTCCA---AAGATAATATCACACG----cgaaaagaa--tttttgtgTCGGTGATATGCATA-----TAGTGATTATCAACACTACGATTGGTGGA----TAGGTGATTTACAACCGTTCGTT---CGGTGTCCCG-CGgta-ttcatctgaaatttgatcaATCGCC-ATTCTTCTTGTAGGTCGC-----CGGCAA-A--CTACCGTACCGGAACTGTGATACGT
i caeSp111.Scaffold626  I 8 C 0
s caePb3.Scfld02_0       4119890 240 +  4147112 ---aaaa--aa---aGCG----ATAATCCATAC------CCCCGGGGTCCTATCGCAA--------CGCTTGCCCTCCA---GATATA--ATCACAAG---ACGAAGAA--------TGTGTCGGTGATATGCATA-----TTGTGATAATCAACACTACGATTGGTGGATAGGTAGGTGATTTACAACCATTCCCT-CCCGGTGT-CCG-TTGTG-tccatctgaaatttgatCAATTGCC-A-TCATCTTGTAGGTCGC-----CGACAA-A--CTACCGTACCGGAACTGTGAtacgt
i caePb3.Scfld02_0      I 8 C 0
s caeJap4.Scaffold18137    24050 251 -   658288 CACTAACTTGA---TAAA----GTAGCTCATTTCTGCGTCCCCCTTTGC------CACGCGTTGTCCTCGTCGCGTCCC---GATATA--ATCACTAGTTGACGAAAAGAA---ATATGTGTCGGTGATATGCATA-----TTGTGATAATCAGCG----ACCCTGTAGAATGGTGCGTGATTTACAACCGTTCG---TCCAGTAT-CCGTCGGTG-TCCATCTGAAATTTGATCAATTGCG-A-TGATCTTGTAGGTCGCCGGATCGACAA-A--CTACCGTA----------GATACGt
i caeJap4.Scaffold18137 C 0 C 0

a score=-10748.000000
s ce10.chrX              5856818 88 + 17718866 ------ATTTCTGTT----CTTTTCCGACAC---CCAAT-CACCCA-----CACCGGTAGAAAGGCTACTTTCATGAGAATCCCCCTCCTTCGCCAATCT----TATTTTC--
s caeRem4.Crem_Contig0   2539900 96 -  4500979 -------TTTTCGTTTACCCTCTCCCGACAC---CCAAT-CGGCCA----CCGGTAGTCGGTATCAGAGTATTATAGTGAGACAACCTCAGAAATAactttccccattttt--
i caeRem4.Crem_Contig0  C 0 I 6
s caeSp111.Scaffold626    372071 89 -  1189296 -------TCTCTCTTATCTCCCTCCCAACAC---CCAAT-CATCCAATGACCCCTAGTCGGTATATGTGAACTCTACTAAGATCCCTTCACAGAATACTT-------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4120130 76 +  4147112 -------tttcttttctattcctCCCGACACCCACCAAT-CATTCA----------------ATCTGAGTACTATGGCAGTTCCCTTACTCGGAGTATAT-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    24301 91 -   658288 acgtacatacatacatacatactttCGAAAA---CCGACGCGGTTA----TCA---------ATATCAATACCAGAAtttttaccctttcccaccactct------ttttcac
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11195874 45 + 21540570 I

a score=232154.000000
s ce10.chrX              5856906 590 + 17718866  
s cb4.chrX              11195919 627 + 21540570  
i cb4.chrX              I 45 C 0
s caeRem4.Crem_Contig0   2540002 575 -  4500979  
i caeRem4.Crem_Contig0  I 6 C 0
s caeSp111.Scaffold626    372160 596 -  1189296  
i caeSp111.Scaffold626  C 0 I 444
s caePb3.Scfld02_0       4120206 585 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    24392 594 -   658288  
i caeJap4.Scaffold18137 C 0 C 0

a score=537.000000
s ce10.chrX              5857496 23 + 17718866 TCAACGAGTGAGCTTTCCCGGCT---------
s cb4.chrX              11196546 13 + 21540570 TCATCG---GATCGCC----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2540577 16 -  4500979 TCAACGAACGAGCGCC----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4120791 16 +  4147112 TCACCGAATGAGCGCC----------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    24986 25 -   658288 TCAACCGATGAGTGCC-------TGCCTGGCT
i caeJap4.Scaffold18137 C 0 I 680
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-7153.000000
s ce10.chrX              5857519  92 + 17718866 CTGACGGACTATCATCCAATTTTATAATTTCCAAATTTTCTAAATTTCTTATAAATTTAGTCGTAA---ACTTTTTCCATAAAAT-----------------------------CTTCTACCTT---
s cb4.chrX              11196559 107 + 21540570 ------GGAGATCATTCTCACTTATA---ATTAAAGCAAACTCAT--------AACTTATTTGTAGTATTCATTTCTGGTAAAGTAACACTTAATGCTTTTTGGGCCAGCTATTTCTCtaactt---
i cb4.chrX              C 0 I 175
s caeRem4.Crem_Contig0   2540593  60 -  4500979 -TGACTGGCGACTATCCAAAGT-------GTCAAATCGAAGATAT------TAAGTTTACTTA------TCTTTTCCCGT-----------------------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4120807  92 +  4147112 -TGACTGGCGACTATCAAAATT-------GCCGAATCATAGATAT------GAAACTTGCTTGCAAT--TCATCTTTCTTCCATTAACTAT-------------------CATCTTTCCAACCTCTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-5087.000000
s ce10.chrX              5857611  99 + 17718866 ACTCAGTGGTCCGGACAAATGTTCGGTTAAATTTTTGATA--------TATTTTTATAC--------------------TTTATAAGAATTTGGAAACCCTACATTGTT--TGAATGCAAAT-AGTCGGA-
s caeRem4.Crem_Contig0   2540653  45 -  4500979 ------------------------------------------------TGTTCATATCC--------------------TTTTT-----------GACCTAATGGTGTT--TGCATCC-----AATCGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4120899 114 +  4147112 GTTTAGTGTGCCGG-----TGTTACATCAACCACTTTGTGccccattttgtttttttccagcagcTGTTGTTTTATgtattttt-----------atctgaaaaatgttaataCAACCAAATTAatcgga-
i caePb3.Scfld02_0      C 0 I 66
e caeJap4.Scaffold18137    25011 680 -   658288 I
e cb4.chrX              11196666 175 + 21540570 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=231.000000
s ce10.chrX              5857710 32 + 17718866 GAAAAGCTTAATGCAAATACAGTAGAAAATTG
s caeRem4.Crem_Contig0   2540698 29 -  4500979 CAACAGCTGTCTTC---Tgtaccaaaaaattg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4121013 66 +  4147112 I
e caeJap4.Scaffold18137    25011 680 -   658288 I
e cb4.chrX              11196666 175 + 21540570 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-1.000000
s ce10.chrX              5857742 4 + 17718866 GTTT-
s caeRem4.Crem_Contig0   2540727 4 -  4500979 -tttt
i caeRem4.Crem_Contig0  C 0 I 5
s caePb3.Scfld02_0       4121079 4 +  4147112 gttt-
i caePb3.Scfld02_0      I 66 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I
e cb4.chrX              11196666 175 + 21540570 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-10060.000000
s ce10.chrX              5857746  82 + 17718866 TTTGTTGACGCTCAAAATTATATTAGAT-------------GGAAAAAACTCAATAGTTGTTATTTGTTACTGTAAATATAA-----ATGTTTTATATTT-----------------------------
s cb4.chrX              11196841  77 + 21540570 TTTCCTGTTCCTCCAAAGTTTATCATACCGC--------CTGAGATCAATCCTA---------CTTCTTACTG-AGATGGAG-----CTGTAATTTATTT-----------------------------
i cb4.chrX              I 175 I 139
s caeRem4.Crem_Contig0   2540736  68 -  4500979 cgttttatttctcaaaacgGCATC-----------------GAAACCAACCCGA---------TTTACTAGTA-TGATCTAT-----TTGCTCTCTATTT-----------------------------
i caeRem4.Crem_Contig0  I 5 C 0
s caePb3.Scfld02_0       4121083 106 +  4147112 -----------tttgaaaagcctCATAATGATTTGATTGTTGGGAATATTCTGA-----------TGGTGGTA-GTATTTGGGGTTATGGTAGTTCATGTTGAGTATCAGTATCTTGAGCAGAATGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-4922.000000
s ce10.chrX              5857828  96 + 17718866 -TTGAGAAGTTTTACTATAAAACTGTGTTCACATAGAA-----------ACAATAGTTAAAATTCAGAAA-----GAT--------TGTTATAGAAAACTGGGTACTCCAAAAATTAATTT--
s caeRem4.Crem_Contig0   2540804  74 -  4500979 GTGTAgtatt---------------------------------------tcagtattttttgttggaaaa-agctCAT--------GATACCAGCAAACGTTGAATACCCAAAGATACGTTt-
i caeRem4.Crem_Contig0  C 0 I 2
s caePb3.Scfld02_0       4121189 116 +  4147112 -TGTAGGATTATGAGCATaaa------ttcttctgaagtttGTTACGTATAAGAATTTCGAATTAAAAGACAGCATTTTTAGATGAGGttttagaaaacaatttatttcaaaacgcaagtttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I
e cb4.chrX              11196918 139 + 21540570 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-34638.000000
s ce10.chrX              5857924 155 + 17718866 -AAAA---AGCAATTT---------TATAACATTAACGTTT-----------------ATTTTG----TTTATCGTATTTTCCAGTGCTGTAACTTTCT---------------------------TTCAAATCTT--AGCAAATAAATTATATTGAC------------------AAAAAGATA-------ATTTAAAAgtgga----------------------attaaattgaaatag----------------------------------aaagtgttaaaaatttaaacttt--
s cb4.chrX              11197057 175 + 21540570 -AAAT---AGAGATTT---------TAA---ATTAAGCCCCAATAGAAAAAC------TTTCTGAG--CCCCACGTGTT------TCCTGT--TCAGAT------------------------GATTTGTTATTTAAATGAAAATGcgttaaaact-------------------gaaaaaaaaa-------actgaaaagaggA----------------------TATAAATAGCAATAATTCCATCTC-----------------TGCGCTAT---ATCTTGAAAGTTT--AGTTTTC
i cb4.chrX              I 139 C 0
s caeRem4.Crem_Contig0   2540880  85 -  4500979 -aaat---at-gtttt---------tca---gtCAGGGTCC-------------------TCTG--------------------------------------------------------------TTGTCATT----AGGAAATGTTCC--------------------------AATAGAAAA-------TCCTACACG---------------------------ATTAATAGTAATAATTccg------------------------------------------------------
i caeRem4.Crem_Contig0  I 2 C 0
s caePb3.Scfld02_0       4121305 287 +  4147112 caaatttcatagtTTGCTCTTCCAATAT---GTTAACTTTC--TACAAATATTGTCTATTTCtgaaatctcattttgtttt---attctgt--CTAGCTTTACCTGAATAACAAATTCTGATAGTTTCCTCATTTT--CGAACGTGTTCTGAAGTTATAAATAACGATTTAGTCAGAATCAAATAATTCATCACCAAAAAGACGAAGTTCGTTCAGTTAATCTATTTCATGACTGACCACAGTGTTTTCTCATGATCAGAACTGAAAACGAGCTACCAAATATTAAGGATCTGAAGTTT--
i caePb3.Scfld02_0      C 0 I 209
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-4553.000000
s ce10.chrX              5858079 115 + 17718866 ttaggggtaggaaacccataagtaccTCAATTG----TTTTGTTGATTATTCGAATAAAA------CCTTATTTTTATTATCATTAAAT------CTAAAATACTCGAA-----------------TACTACTTTACAAAAAGTTGTT
s cb4.chrX              11197232 134 + 21540570 TCTGTGATGAG------Ctgagttttgaaagttctgtttttgtttttttttcgaaaatagagaa--tttgaatttggaatttgtttTAG------TCTAGtcatgagaaaaaagattcgcggttttcaatagtttagaaattgttttt
i cb4.chrX              C 0 I 74
s caeRem4.Crem_Contig0   2540965  80 -  4500979 -------------------------------------atttatttttttgacgtataagaagaaggttttattttcatttttattttagggTGTCTCTAAgtatgaaaa-----------------tatcagtt--------------
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4121592 209 +  4147112 I
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=216.000000
s ce10.chrX              5858194 54 + 17718866 CCACATTTGGCGACATTAGTATGACGACTTGCATTGATCTGTTTTTGACTCAAA
s caeRem4.Crem_Contig0   2541045 37 -  4500979 cC---------------AGTATTTAGACTCGCATTTATC--ATTCTTACTGTAA
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4121592 209 +  4147112 I
e caeJap4.Scaffold18137    25011 680 -   658288 I
e cb4.chrX              11197366 74 + 21540570 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-1479.000000
s ce10.chrX              5858248 29 + 17718866 GTTTAATTTGTAGGATTTTAAAATTTAGG
s cb4.chrX              11197440 29 + 21540570 gttaaaaaattgagatgtgAAAAGTTAAA
i cb4.chrX              I 74 C 0
s caeRem4.Crem_Contig0   2541082 16 -  4500979 ---------TAGTGATCAGCA----TGAT
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4121592 209 +  4147112 I
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=-18678.000000
s ce10.chrX              5858277 121 + 17718866 ------------CTATTTTTGGTATGTTACTGGATTTTTT--TTGTG-------ACATAATCAGAGTTTCGTCTAATCCTT----GTGCTTCTTCT-AAAATAT-TGAAATTATATTTTAGATTCA----------------TTAAATATTTTACTACTCATGT-------------
s cb4.chrX              11197469 144 + 21540570 ACATTCTTATAACTATTGCTA---------CGAATTTTTGGACCACGAAATCACATATCTTCA---TATTGTATAATTTTTCCTCGAATTCCCAATCACCAAACGCAGGGGCACtcctgagaaaaa------------------aaaaccatacgATCCTATTTCTCA-CTTCGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2541098 141 -  4500979 ATACTGTAATGACCAGTTTGA---------TAAACTTTCTAACCACA-------GTATAATCA---GATTGAATAATTT------GGGTTAACAAT----ATATGCAG-----CTCCCGGTAATCATCGTTTTAGTCTTGCTTCCAGTCcattcattctcattttttgttttcag--
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4121801 121 +  4147112 ------------CCACTTTTA---------TTAATGCTTG--CCACTG------GTGTGATC----TCTCGTGTAGTTAGTTTT---GTTTACAGT-AGGATAGTTGGAACTATTTTAGAAAATCC---------------GTTGTGTCCATATTCTgccatttc----attcattt
i caePb3.Scfld02_0      I 209 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I
e caeSp111.Scaffold626    372756 444 -  1189296 I

a score=26504.000000
s ce10.chrX              5858398 198 + 17718866 TCTAAAAGTTTTCTCCAT-AAATCATAAAGTTCTCAGGTAAAGCTCAGCCAATACTGCGAAATCTTA-------TGAGATTTACGAAAAAGATTTCCAGATAATGCTCTGTTTCATTGGGAAGTGACATCAATATA----AGATTTCGGTTTATTGGTAGATTTTTTGTTCCTGGTCTCA-CTGGTATAGCCGCT-CAT-----CATTCGGCTTACA
s cb4.chrX              11197613 187 + 21540570 -------TCTTCCAGTTCGAGACGT--ATGATTTTACGGA---------TAACTCTGCAATTTCTTGGAAGAAAGAAGATTTAt-atccagatttccagataaGGCTCTGTTTCATAAGGAAGTGATATCAATATGAGTTAATTCTTCCCCT-CTGGTAGAATCCATTCAC----TGTTCTCTGGTAGTCAAATC-CAT-----TTATATGGATACC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2541239 185 -  4500979 -------ttgttaAGTTTGAGATCA--CTGAATTTACgaa----------atttctgcaaattctTG-------GAAGGTTTAT-AAACAGATTTGTAGATAATGCTCTGTTACATTAGGAAGTGATGTGAATATGAGTCAGTGTTCGTTTTACTGGTATAATttatttccttgttttcccCTGGTAGACAGATTGCAT-----ATTTTGCTTTATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    373200 195 -  1189296 tccaaaattttcttccattcagTTATTGTGATTTCATGTA----------ATTTTGGTCAATTCTTG-------GAAGATTTA-----CAGATTTCCAGATAAGGCTCTGTTTCATTAGGAAGTGATGTCAGTATGAGTCAGTTTTAGTTTTGTTGGAATCATTTtatctctcattttccttttttggaagaatggCATAAAAGCTAAagcctcttt
i caeSp111.Scaffold626  I 444 C 0
s caePb3.Scfld02_0       4121922 186 +  4147112 -cctgGATTTATCTCTGGAGAATGG--GTGACTTCATGCA----------AATTT-GCAAATTCTTG-------GAAGATTTAC-AGCCAGATCTTAAGATAAGGCTCTGTTTCATTAGGAAGTGATATCAATGTGACTCAGTGTTCGTTTTGTTGGTATC---TTCCCTTTCATGCTCC-CTCCTGGAAGAATGCCGT-----CGCGATTCTTTTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    25011 680 -   658288 I

a score=641550.000000
s ce10.chrX              5858596  923 + 17718866  
s cb4.chrX              11197800 1004 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2541424  948 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    373395  970 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4122108  952 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    25691  929 -   658288  
i caeJap4.Scaffold18137 I 680 I 783

a score=-27725.000000
s ce10.chrX              5859519 176 + 17718866 CCACTACT----TTCCTGCCTCAGGGTCTTGTTTTAGAT--------ATTGGACTTCTACAGTCTAGATTGGTCAGTTTAATTTA--AACATTTTTTTCCATCCAATT----CTTATCTTATTTGCTTATTG------CTTATTCGCTGCGAGTTGTTGCTTTTGTTTCCAGT--TTATACT-----------TA------AAGATTTACCAT------TTTG----AA-----
s cb4.chrX              11198804 176 + 21540570 CAGTCATGGATTCTATAGCGTTAG------CTTTTCAAGAATATTTAGTGGTATTTTTGAAACCTAG------------CGTTTA--TACAGTactt--------agt----ttttcaaaaccgaaTTTCTA--------TCTTCCATTTTAAT------TTCTATCTACAGT--ACCCACTTGACTACGTTGTATCTGAGAACATGTTCCTT------TTTG----TATTCAA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2542372 174 -  4500979 CCACCACA----TTACAGCCTCGGG--CTCTTTTTCGAT--------GTTGGGGTTCCACCGCCCAG------------AAGTTGGTTTCACTAGTT--------ATT----CTTTTTCTACAGTATGACTATGACATTTtgtttctttaaatt------tttcattttcagc--atgtaCT------CGTTATA--cgacaaaatttaaaat------tttgattcatttcaa
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    374365 150 -  1189296 TCACCACA----TACGTGCCTCGGG--CTATTTCTAGAT--------GTTG-GTGCCAACCGCCAAA------------AATGAT--TCCACATTTT----CCCAATTTGCGTCTATGCTA------TTCTA--------CCGTATGAACCACT------CCATAATACTGAA--GAATAAT------TGTGATA--------------CCGTaagcaattca----aa-----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4123060 158 +  4147112 CCACCACA----TTCATGCCTCCGG--CTATTTTTAAAC--------TTTG-GTCCCAACCACCCAG------------AAGTCA--ATCATCTTTT--------ATTGGCATCTATCCTACAGTACTCCGA--------CATTCTCACTAACT--TTGCTTATATCAATGGGTCGGATAAT------TAGGGTA--------AATGTTCTGT------TTTG----GA-----
i caePb3.Scfld02_0      C 0 I 81
e caeJap4.Scaffold18137    26620 783 -   658288 I

a score=-4984.000000
s ce10.chrX              5859695 82 + 17718866 ACACTTACTTCTGAAGTAATCTTTTCTTATCCCCGG---CTCACTGTTCAT----TTGATCGTTGATGCCTTCCAATCCCATTCTACTC----
s cb4.chrX              11198980 63 + 21540570 -----------------------CAACTCACCTGGG---TTTGTAATTTGTCTTCTTGATCattgatatttgaaaaaggCACTCTGGTC----
i cb4.chrX              C 0 I 51
s caeRem4.Crem_Contig0   2542546 46 -  4500979 -----------------------aaatccccTTCGG-------------------TTGatctttgaagttttcaaaactcgCT-TATTC----
i caeRem4.Crem_Contig0  C 0 I 5
s caeSp111.Scaffold626    374515 81 -  1189296 aaaccaaaacataaattca----aatttcccgCCGGTTTTTTGAGACTCAA----TTGGTCATTGGTGTTTG---ACCGCACC-AATCCTTGC
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4123218 81 +  4147112 I
e caeJap4.Scaffold18137    26620 783 -   658288 I

a score=-3845.000000
s ce10.chrX              5859777 46 + 17718866 -----------TCAACTACTTTTAATCAGCTCGTCTCACTATTTTCGGTGTTGGCTC
s caeRem4.Crem_Contig0   2542597 36 -  4500979 TAAGCTCCGCCTCAAATGCGTGCA---------TTGCAA-ATGTTC-----------
i caeRem4.Crem_Contig0  I 5 C 0
s caeSp111.Scaffold626    374596 18 -  1189296 -----------CCATTTATATTTA---------CCCCA-------------------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4123218 81 +  4147112 I
e caeJap4.Scaffold18137    26620 783 -   658288 I
e cb4.chrX              11199043 51 + 21540570 I

a score=-1265.000000
s ce10.chrX              5859823 15 + 17718866 GAAAGGTGTCTATGC
s caeRem4.Crem_Contig0   2542633 15 -  4500979 GAAAGGTGTCTGCAC
i caeRem4.Crem_Contig0  C 0 I 1
s caeSp111.Scaffold626    374614  5 -  1189296 ---GTCTA-------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4123299  8 +  4147112 AGAAGGTG-------
i caePb3.Scfld02_0      I 81 C 0
e caeJap4.Scaffold18137    26620 783 -   658288 I
e cb4.chrX              11199043 51 + 21540570 I

a score=-3662.000000
s ce10.chrX              5859838 60 + 17718866 TAATAATTATGTGGTGCACCCCCAGACAGGGCGGGTGCTAGA--------TGATACCCGG-CTTAGTCC-----
s cb4.chrX              11199094 62 + 21540570 AGGTAATGGCCACACAC-----CAGACAGGGTGGG-ATTATGGTGACGAAAAATGTGAGG-CTTA-----GGTC
i cb4.chrX              I 51 C 0
s caeRem4.Crem_Contig0   2542649 70 -  4500979 AAATAATTACGAGGTGCATAGACAGACAGGGCGGGTGTCAGTGTTACG--TGATGACCCG-CTTA-TTCGGCAC
i caeRem4.Crem_Contig0  I 1 C 0
s caeSp111.Scaffold626    374619 53 -  1189296 -GATAATTATAAGG-ACCACCACAGACAGGCCGGGTGTC-----------TCAT-AGCCG-CTAA-TCC-----
i caeSp111.Scaffold626  C 0 I 37
s caePb3.Scfld02_0       4123307 51 +  4147112 -AATAATTAT-----GCTTTGGCAGACAGGGCGGGCGTT-----------CTGCGAGTCACCTAA-TCT-----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    26620 783 -   658288 I

a score=-7794.000000
s ce10.chrX              5859898 65 + 17718866 CTGCGCGAATGTGTGGAGAGAAAGC-------CTTACCGTAGGACGACTCCTGGAGACAGGTGTATGGGCAA
s cb4.chrX              11199156 38 + 21540570 -----CTGTTTTGGTAGAGTAGACT-------CCAAATTAGGG-----TACGGCA-----------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2542719 62 -  4500979 -----TCATTTTGGTAGGATAAAGCGGGAAAATAGAACCGGGG-----TACGGTAGATTGGCATATGTACCA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4123358 36 +  4147112 ------CGATGTGTCCAGCTGCAGC-----------------------TACCGTAGACCAACGCT-------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    26620 783 -   658288 I
e caeSp111.Scaffold626    374672 37 -  1189296 I

a score=-51282.000000
s ce10.chrX              5859963 353 + 17718866 TAGAGGCAAATTAATTTGCACAGTAATTTCCATTGAGTCCGACCGAAACTTGTGCCCACAAA---AAGTGGACATATTAATAAGA--------GTAATTTTAGTTTAAGTAAGTTACTAAACTTTTTGAAATACTTACCAGAACTGAGGATAGGCATGTGTGCCAGAAATATGTGAATAATTATTTTAGTGATA----------AGTCTAAGA----AAACGATA---TCTCAAATTGGTTCCCTTTGTTATATG---------AC---ATTTTTGGTTA------AATTCATTTGGTTATATGCTCAT-------GTTAATTGGTTTCATATATTA---------------CGGTTTTCCTTTTAATCCAAA-TCGTTTTT-TGTTGAAATCCAGCCGTTGCTTTAT-----CCACCCGGCTCACTT
s cb4.chrX              11199194 214 + 21540570 -----------------------------------------------ATTAagatctttgaa---aaatctgt--------------------ttgaTTTTAATTATT----------------------------------------gctaaaaaactgtttcatattcacaa-----------ttttccatt-----------ttctgaaa---------ttgtccATTTTAGTCAGTTccttagattctgaa---------at---gttcttttaaa------agaacatGTC------TGAAGAA-------CTCTATG-----------------------------TGC---CATTGCTCATCTTGA-CTTTTCAT-GGGTGATCCTAAGTTGTCTC---AT-----TCCCCCTTCTCACTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2542781 328 -  4500979 GATAGGTAGGTTAATGGAAACCGAACACTTTA-----------GGGTGCTTAGGTGCTCAAA---AAATTCGTATACCAAAAcaatta-----ttcattttgtttctcgT---------------------------------TCTAGGTTAAATTAGTGTTTCGTTTTTGTAGAAGT-------TGTGACACTACTcagaaaaattcggaaa---------ttg---gTTTTGG---AATGCCTGTTTtgtaaa---------attcatttcttttacaTTTTGGGGACAATGTCCACGGATGataat-------tttcattattcttcCACACTAGAGTTAAGAATTCTTTGCCCTCATTCCTCATCTTGA-CTTTTCAT-TGGTGATCCAAAGTTGTCGC---AT-----CCCCCCTTCTCACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    374709 264 -  1189296 -----------------------------------------------TAGAgcagattcaaa---aaaccatt-------tatGATGA-----TCGTTTTCGTTTACAGtctgtt----------------------------tttattatgaaaaccCTAAACAGtttcatag-----------tttttgata----------attttgaaa----------ta---aaccCAACTatatctttttattcttgatGATACTGTat---atcttttcaaa------aaattattccgtCT--TGACTAtagttcttttttattgtct-------------------------TGACTCTTTCCCTCGTCTTCAGCTATTTGT-GGTTGATCCAAAGTTGTTGC---ATCCCCATCTCACTTCTCACTT
i caeSp111.Scaffold626  I 37 C 0
s caePb3.Scfld02_0       4123394 290 +  4147112 ---GaggaaaacaccaaaaaatctTATCTCAA-----------CCAGAAGAGTAGGCCTGAACTGAAATAAAT-------AAGggtgaagaattttttttgttttgtggttagtt------------------------aagaattagaatagaattagaacacgattttttgggttt------ttttttcaaa----------attcagaaactccgaattttg---aattcaaccaaa-------atttttga-----------------acttcaca------ACATATTCCCCACT--TGA-----------TTCTTTTGTCT-------------------------TGA-TCCTTATCCAATCTTGA-CTTTTTGTGGGCTGATTCTAAGTTGTTGC---AT-CCCATCTCACTTCTCACTT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    26620 783 -   658288 I

a score=135443.000000
s ce10.chrX              5860316 130 + 17718866 CTTGCGCTTCTCGCGATCT--TCTCTTTTCCTGTGTAACTCGAAATTGGGTTTCAAGAGGCAGCACCGCTCAATTCAATATAGAATCTGGGGTCGGTGAA-CCTCCTTGACATTTCGACAGCTCC-AAAGAACT
s cb4.chrX              11199408 130 + 21540570 CTTGCACATCTCGGGGATG--GGTCT-TTCCTGTGTAACTCGAAATTGGGTTTCAAGAGGCGGCATCGCTCAATTCAATATAGAATCTGGGGTCGGTGAGTCCTACTTGACATTTCGACAGCTCC-AATGAACT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2543109 127 -  4500979 CTTGTGCATC----GGGTG--CCTCTCTTCCTGTGTAACTCGAAATTGGGTTTCAAGAGGCAGCACCGCTCAATTCAATATAGAATCTGGGGTCGGAGGCAACTCCTTGACATTTCGACAGCTCC-AATGAACT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    374973 126 -  1189296 CTTGTGCATC----GGGTG--CCTCTCTTCCTGTGTAACTCGAAATTGGGTTTCAAGAGGCAGCACCGCTCAATTCAATATAGAATCTGGGGTCGGTGAG-CCTTCTTGACATTTCGACAGCTCC-aactaact
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4123684 129 +  4147112 CTTGCGCATC----GGGTGCCCCTCTCTTCCTGTGTAACTTGAAATTGGGTTTCAAGAGGCGGCACCGCTCAATTCAATATAGAATCTGGGGTCGGTGAGCCCTCCTTGACATTTCGACAGCTCC-AACGAACT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    27403 125 -   658288 CTTGTGCATC------GTG--CCCCTCTTCCTGTGTGACTCAAAATTGGGTTTCAAGAGGCGGCACCGCTCAATTCAATATAGAATCTGGGGTCGGTGAG-CCGGCTTGACATCTTGACGGCTTCAAACGAACT
i caeJap4.Scaffold18137 I 783 I 1143

a score=422.000000
s ce10.chrX              5860446 1 + 17718866 T
s cb4.chrX              11199538 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2543236 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    375099 1 -  1189296 t
i caeSp111.Scaffold626  C 0 I 259
s caePb3.Scfld02_0       4123813 1 +  4147112 C
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=67.000000
s ce10.chrX              5860447 1 + 17718866 C
s cb4.chrX              11199539 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2543237 1 -  4500979 T
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4123814 1 +  4147112 C
i caePb3.Scfld02_0      C 0 I 295
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    375100 259 -  1189296 I

a score=78.000000
s ce10.chrX              5860448 6 + 17718866 ATGGAA
s cb4.chrX              11199540 6 + 21540570 GTTGGC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2543238 6 -  4500979 TTGGGA
i caeRem4.Crem_Contig0  C 0 I 267
e caePb3.Scfld02_0       4123815 295 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    375100 259 -  1189296 I

a score=494.000000
s ce10.chrX              5860454 27 + 17718866 GTC---------AGCCATATC-----ACACATTTCGTTTTC
s cb4.chrX              11199546 41 + 21540570 ATCTGAAGAAAAAGCCGTGTCTTATTACTTATTTCGTTTCC
i cb4.chrX              C 0 I 301
e caePb3.Scfld02_0       4123815 295 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    375100 259 -  1189296 I
e caeRem4.Crem_Contig0   2543244 267 -  4500979 I

a score=0.000000
s ce10.chrX              5860481 695 + 17718866  
e caePb3.Scfld02_0       4123815 295 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e cb4.chrX              11199587 301 + 21540570 I
e caeSp111.Scaffold626    375100 259 -  1189296 I
e caeRem4.Crem_Contig0   2543244 267 -  4500979 I

a score=91.000000
s ce10.chrX              5861176 1 + 17718866 A
s cb4.chrX              11199888 1 + 21540570 A
i cb4.chrX              I 301 C 0
e caePb3.Scfld02_0       4123815 295 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    375100 259 -  1189296 I
e caeRem4.Crem_Contig0   2543244 267 -  4500979 I

a score=49338.000000
s ce10.chrX              5861177 294 + 17718866 TGTCCTCTC-GAAAGTCAG----A----AAACTGCAGACACTGGTA-GAGGGCAGTTTGAAACTTATTTGATTATACCTCCACCAACAAATTTTTGCCA--ATTTTCCACCTGTGGTAGCTCCTGATTTTTGTCTATCGGCTGAGAATTGGAAGAATGCGGTGTTCTGAACTC--GTTTTATTTTATGCCTGATCTATGTGGTTCTCGGATTTTTAAACGCCTGTTTAGAGGTTCCCA-----GTAG-TGTTTAG--------------AAAACAGGATAA--------------------------------------Catttttaatga-aaatttttta-atattttCAGTGCCAAGCCAGAAAA------
s cb4.chrX              11199889 249 + 21540570 TGTCctttcaaaaagtcagaaCAA----AAATCGCAGACA--GGAA-Gcg---agtttcaaatttatttgATTACACCGCCACCAAGAATGTGCTGCCAtttttttCCACCTGTGGCACCTCCTGATTTGTGTCTATCAGacgaaaattggaagaatgTGAAATTTTGCACCC-AGTCTCGTTTTCTTCCAGATCtgtcataat-----------------ttttgataagaCA---------GTAT-GACTTGA----------------------------------------------------------------TTTTTCTATTAT----CGTTTTCTGTATCTTTGGTA-------------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2543511 351 -  4500979 TGCCCTTTT-TTAGGTCAG----A----AAACTTCAGACACTGGCA-GCACATAGTTTGAAACTTATTCAATTATACCGCCACCAATAAATTCTTAGCA--ATTTTCCACCTGTGGTACCTCCTGATTTCTGTCTATCAAAAG-AATTTGGAAGAGTGTGATATCTTGaacccttttttcattttattccagATCTGTAACCTTTTTCTACTTGTAAaccatttttatgaaatattcCTTTCTgtat-aatttggaaaaatactTGC--AAAAGTGGGAACTTGAAATCGTATTtagaaaagtacagtaaccaatAGGttttttttGGTGTAAAATGTTCTc-gtatttttatttctcatttaaaATA------
i caeRem4.Crem_Contig0  I 267 I 156
s caeSp111.Scaffold626    375359 278 -  1189296 TGTCCTTTA-AATAGTCAG----A----CAACTCCAGACACTGGCT-GGAATCAGTTTGAAACTTATTCAATTATACCTCCACCACAGAATTTCGGCCA--ATTTTCCACCTGTGGT-CCTCCTGATTCTAGTCTATCAAAGA-AACGTGGAAGAATATGATTATCTGCACCcacttctatttttttttcgggtcTGTATCCATttagaatg---------ttttttttctgatttgaaaCATCTAG-ACTTTGcaga-----------aaaagtcgaaaa--------------------------------------atagtttttttt------------gcatttttg-----------aagcGTGCTTG
i caeSp111.Scaffold626  I 259 C 0
s caePb3.Scfld02_0       4124110 310 +  4147112 tgcCCTTTT-GATAGTCAG----AAAACTAACTCCAGACACTAGCGAGGGAAGGGTTTGAAACTTATTCAATTATACCTCCACCAAGGAATTTCGGCCA--ATTTTCCACCTGTGGTACCTCCTGATTTGTGtctatctggaa-aaattggaagaatgtGATATCTTGAacccaattttcattttattccagatctgtggtttttttcaaagtaa------ttaTTATTAAGTACTGGTACATTTAGTGTTTTACGAACATTCCTATCTAGAACCCAAACG--------------------------------------TTATTTTGGTGA------------GTATTCAAGTACCCCAGGCCAAGAGGGCAAA
i caePb3.Scfld02_0      I 295 C 0
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=-22047.000000
s ce10.chrX              5861471 126 + 17718866 GTATTGGACAAGGT-------TTTTGTAAAAT----G-ATTTTACAAGAATTC---------------------------------------GATTATATTGAGCTCTATTCACGTTTCGAATGAAAAAAAAAGAGTTTCCACTCCAAAGATTTATTTTGATC-TGAACCA------------------------------------------ACCCTAG-
s cb4.chrX              11200138  87 + 21540570 -------------------TTTACGATAAACTTCATA-CTTTTATAATCATTG--------------------------TTTGATCTATGTAGACCATCAGAG-------------------------------------------CATGAC-------AACCATGATATA--------------------------------------ACTCACCTCTGT
i cb4.chrX              C 0 I 2
s caeSp111.Scaffold626    375637  91 -  1189296 ATGCTTGATAAAAC--------CCAATAAAATTGTGG-AATTTGAACCTATTA-----------------------------------TATGGTTCATCTAGG-------------------------------------------CGTAACAGA----GAACATGCACCG--------------------------------------CCAGACCCCAG-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4124420 210 +  4147112 ATAATCAACTGAACAATCATATTTTACAAAATTCTGGTCTTTTGTACTCATTAAAAGTCAAAAACTGtgatcttccattttttttcttcatagtTCCACTAGTGCTTGATACTTGGTTTATATGACTAACC-----TTTACacttccaaaactga----aaac-tgaaccGAGATGGCTCATATAACCGTGACTTCTGATGAACATGTACCAGACTCCAA-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2543862 156 -  4500979 I

a score=97611.000000
s ce10.chrX              5861597 297 + 17718866 ---TTTAAGTTCAATTTTTTGCTAGGTAGACTGGAACAAGTGAAAATGACAATTAATCG-GCGTA------------------AAATCATTGCTTA-CT-CGAAAAAAAG-TAACCGCCACCCATTGCGTTCC-AAAAAAGTGGAATACCCTCTGATTCGATTTTC--------------GCAACGTCGTTTAGTTATCAGCGTAATTTACTGGCACTGTTGTGTG---------CGTTCCACAAAAGATTTTGCCCCCCGCAACAGGTTTGAAAGAAGA-----ATGTCCT---GGCA--AACTACAATCAAAATCAACGTATCGGTTTATT--TGGAACTG-------ATTTCAATTTTTTGA
s cb4.chrX              11200227 338 + 21540570 ---TTTAAGATCAA-TCTTTGCTAGACAGACCGAAGCAAACAAGAAAGTCAATTAATCA-GCATCCTGTCTGAGATTGACATTAAATCAAC--TTT-AACTAAAAAAGTGACATCCGCCACCCGGTGTGTTCC-AAAAAAGTGGTATACCCAATGATTCGATTTTCGCCGAGGGGGGACGGCAACGATGTTCAGTTATCAGCGTAAATTACTGGCACTGctgtggatttttttttcggtttccaCATTTTG----CCC---TAACAGGTTTGGAAAAGA------ATGGCCT---GAGATCAAATGAAGCACTatcagaaacttttgaaaatc--agagtcTCTGAATgagtttcaatttctcaa
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2544018 307 -  4500979 ---TTCAAGTTCAA-AATCTGCCAGACAGACTGGAACAAACGAGAATCTTAATTAATCA-CCGTT-------AAATAGACATTAAATCAACAGTTT-CA-TAAAAAAGAGACATCCGCCACCCAGTGTGTTCC-AAAAAAGTGGTATACCTCTTGATTCGATTTTC--------------TCAGCGTCGTTTAGTTATCAGCGTAAATTACTGGCACTGCTGTG-----------CGTTCCGAACAAATTT----CTCGTGTAACaggtttgaaacaaaaaatagatgTTCT---GGCA--AAATAAGACCAAATTCGGTTTGTTTCTTCCTT--TGGGTTTT-------GTTAGAACTTAACAA
i caeRem4.Crem_Contig0  I 156 C 0
s caeSp111.Scaffold626    375728 325 -  1189296 TTCCTCAAGTTCAA-ACCATAGCAGACAGACTGGAACAAACGAGAATGCCGATTAATCA-CCAAC-------AAATAGACATtaaatcaacttttt-ca-tgaaaaagagacatcCGCCACCCAGTcggttccaaaaaaagtggtaTGCCCTCTGATTCGATTTTCTCC-----------TCCTCGTCGTTCAGTTATCAGCGTAAATTACTGGCACTGTTGCGTGTTG------TGTTCCACACAAATTTT--CCTCTCGTAACAGGTTTGAAAGAAGACGGTGATGTCCTGACAGCA--AACTGAGATCAAATTCGACGTATCGGTTTTGTTCAGAACTaa-------ctttccttttttcg-
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4124630 302 +  4147112 GTTGTGAAGTTCAA-TTTATGCCAGACAGACTAGAACAAACGGGAATGTCAATTAATCAGCAAAC-------GAATGGGGCATTAATCAACTTTTCGCA-TGAAAAAGAGACATCCGCCACCCAGTGTGTTCC-AAAAAAGTGGTATGCCCTCTGATTCGATTTTCTCC-----------GC----TCGTTTTGTTATCAGCGTAAATTACTGGCACTGTTGTGGGTTG----------------AAATTT----CTCTCGTAACAGGTTTGAAAGATAATGG---TGTCCT---AACA--AACTGAGATCGAAATTGGAGGATCAGATGATT---GGGCAag-------gtttctcttttttga
i caePb3.Scfld02_0      C 0 I 231
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=-611.000000
s ce10.chrX              5861894 5 + 17718866 -TTTTC
s cb4.chrX              11200565 5 + 21540570 atgTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2544325 5 -  4500979 ATGta-
i caeRem4.Crem_Contig0  C 0 I 341
s caeSp111.Scaffold626    376053 5 -  1189296 atttc-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=-1828.000000
s ce10.chrX              5861899 40 + 17718866 ---------------GTTT--AATCAGA-----ATGTACTTTTGAAGTTTCA--CTGGCTTTGT----
s cb4.chrX              11200570 64 + 21540570 GATAACTTTGAAATGGATTAGAAGCAGAAAATAATGTTCTTTCGTAATTTCATGCTTGCTTGAT----
i cb4.chrX              C 0 I 83
s caeSp111.Scaffold626    376058 42 -  1189296 -----------cacgatttagaagaaaa-------------ctccaatttca--cttttttaattAGT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-425.000000
s ce10.chrX              5861939 55 + 17718866 ATTCTTTAA------ACCTATTAAA-----TTTGGTATAGCAGAGCAAAACT---------------ATCAAGACAAGTTT
s caeSp111.Scaffold626    376100 81 -  1189296 ACGTTTTCATGTAGTACTTTTTAAGAGTTGGTTGATTTATCAGCAGGAAGCtcacaaaaaataagaaatcatTATGAGTTG
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e cb4.chrX              11200634 83 + 21540570 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-10936.000000
s ce10.chrX              5861994 142 + 17718866 TTTAACACTTTTTCAAAA-----------------------AAC-CTGACATTTTTT-------GATTTTCGGTATTTTGTTCAAA-ATGCTCATCT-GCTGCTTT-------ATTTCTTT---------AAGTAACTTATTTGAAACTT--------TATC----TTTCAAATGGC---ATGTG---TTTTATTCGGAAATC--------TAAAAG---------
s cb4.chrX              11200717 194 + 21540570 TAAAACACTGATACAAAA---TAGAAATGA-----------AATGCTCG-ACTTGTTGAAT---GAGTTTTAGTGAGTTGATAGACCATGATGATCTGAAAGTTGT-------AGTACTTCAAACTACTCAAGTGAATAATTCGATAGGCGTGAGAGGCATT----TTGCAAAGAGTTATCTTTG---AATGAGTAGGAACTATTTACtcttggaaattcgaaaaa
i cb4.chrX              I 83 C 0
s caeSp111.Scaffold626    376181 175 -  1189296 ------TTTGATTCTTAACTTTTGGAATGACGAGACAGATCAATACACACACTTTTACAACTCAAACTTTTA---------------ataatcatct-----tttttccaataattaCTCTGAACT----TATTGAGTAAT---ATAAGC-TAAAGTGCATCCAGATTACAAAAA-----CTATGCAAAATTGCTCGAGACTG---ATGTTTAGAAG---------
i caeSp111.Scaffold626  C 0 I 50
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-535.000000
s ce10.chrX              5862136 13 + 17718866 GTAGCTG------------------AAACTC
s cb4.chrX              11200911 31 + 21540570 ataacaatttgaGTTTTGGATTGGTAaactg
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    376356 50 -  1189296 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-7544.000000
s ce10.chrX              5862149 109 + 17718866 ----------TTTCATTGT----AAGGTTTTTG---TTCTTTGATTTTGAAAAAAAA-GACAGATCACTACATAGACTTTACAAGTTAGAATAGACTACATAATG-----CAAAAATTAAAACC-------------AAAATC-----------------------------AT--------
s cb4.chrX              11200942 139 + 21540570 tttttgaatttttcgtaatttccaagaatttcaagtttttttcccGTTGAATGAAGA-GGCAAATCATGAGCTGT--------TGTTCAAATGCTTTTCATTTGTTTACCAAAGAATTAcgatttctgcaatttttaaagttg-----------------------------ataAA-----
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    376406 142 -  1189296 ----------TTTCATAGTACTCACGGG-------------TACTGATGtgtggaaattgaaaagcaTCAG------------TGTTtgcatattttttattttt-----gaaaagttaggtttcttgtttttttggaacatGCTCTTCATAAGGAACATTTCTAAACCATTATAAAATCAC
i caeSp111.Scaffold626  I 50 I 14
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=88.000000
s ce10.chrX              5862258 14 + 17718866 TTCTGGCTAGCTGA
s cb4.chrX              11201081 12 + 21540570 TTCTGTCTGATT--
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeSp111.Scaffold626    376548 14 -  1189296 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=451.000000
s ce10.chrX              5862272 26 + 17718866 TTCAAAAGTGTGGTCTGCGACA---------------------TTGC
s cb4.chrX              11201093 38 + 21540570 CTCAAAAGT---------TACAATTTGTGTTTTCTATTTTGCGTTGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    376562 17 -  1189296 ttcaaaagt---------tACA---------------------TTGT
i caeSp111.Scaffold626  I 14 C 0
e caePb3.Scfld02_0       4124932 231 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-4686.000000
s ce10.chrX              5862298 29 + 17718866 ----------------AGTTTAATCAAACCGAAAATTT---------CTTTGCA
s cb4.chrX              11201131 35 + 21540570 ATTTCTAGCGGAACAGAAAtgtagaaaactttgaa-------------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    376579 21 -  1189296 ------------------------AAGATTATGAATTT---------CTTGTAA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4125163 38 +  4147112 ----------------AGTTTTGTAAAACTGAGAACTTGATCTGAAACACGTTA
i caePb3.Scfld02_0      I 231 C 0
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544330 341 -  4500979 I

a score=-12282.000000
s ce10.chrX              5862327 115 + 17718866 TTTGTAATCTACTAGACCATGATGACCTGGAGCTGGT------AGTATTCGGGGTTACTGAAGTGGACTAATTGATAAGC-----ATCTCGATTCTCGCAACTTTTACCAGCAAAA-------------------CA---CGCATGTT--
s cb4.chrX              11201166 134 + 21540570 ttgg------AGTGGAAAACGATGTTTTGACTT--GTTAAATGAGCAATTGTGACT-TTCAAATTACCGTATTCTAAAAC---A-AACCTCGTTTT---AATTTCTTACTACAAACTTCAATGTTCCCATTTTTTATTATTGCTTGTTAT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2544671 122 -  4500979 TTAGTGCTTTAGCAGACCATGATGATTTCATTTCGGT------AGTACTCACGGCTACTCAAGTGAACAAATTGTTAAGC---ATGAGGTAGTTTTCGCatatttttatctcaaaa-------------------aaaacaagctgTTTG
i caeRem4.Crem_Contig0  I 341 C 0
s caeSp111.Scaffold626    376600  79 -  1189296 GTG-------AAT------TCATGATCT--ATGCCCT------AGCACGAATGTTCTTTAGTATGA-----------------A-GTTCTGATTTCTGCAACTTTTAATagttaaa-------------------aa-------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4125201 122 +  4147112 GTGTTGGTCTAGTAGACCATGATGATTTAAATATTGT------AGTACTCACGATTACTGATGTGAGCAAATTGCTAAGCACGA-GTGtttttctttgcatatttttatcttggca-------------------aatcaagcacatt--
i caePb3.Scfld02_0      C 0 I 934
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=76.000000
s ce10.chrX              5862442 6 + 17718866 AATTCT
s cb4.chrX              11201300 6 + 21540570 AGTTCA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2544793 6 -  4500979 AATTCT
i caeRem4.Crem_Contig0  C 0 I 1492
s caeSp111.Scaffold626    376679 5 -  1189296 acttt-
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4125323 934 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=-10352.000000
s ce10.chrX              5862448 137 + 17718866 AGTC------------TCTCAAAA--------------AAATTGTCTGGCACCATTGCATAA----------------CGTTTCTGTGTTTATTTATACCAT----------TTGATGTTTCA--TAGTTGGGCTATC---AACTCAGATATCTCAAATATCAGTCTATCATTTTC------CTCATGTTTTGAATACTT---------------------
s cb4.chrX              11201306 192 + 21540570 ATTCAATTAGtaattgtttcaaaacttataa------------atttag-aaatttgaaaagtcctGAGTATTTTATTTGATCCAGTTTTCATACTTCCAAAAcgttttctctattttttccatcCCGT----GCATGTTCTGCTTCTTTGTCTGGCAC---------TCGCTTATCAGACAGTTCCATTCATAACAATTCCACACTCGTATTTAtca---
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    376684 165 -  1189296 ----------------tcttgaaaatgaggagAGATTGAAGGTATCTAA-ACATTTGTAAAATGCTAAA---------CTATTCAGGTTTCAAACTGAGAAA----------CAGCAGTTCCA--CAGTAAAAACATG---AACTTCGACAGTTcagat---------tcattttt------atctcattttccgAACCTACTCAGCTTTATTGATCACTT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4125323 934 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I
e caeRem4.Crem_Contig0   2544799 1492 -  4500979 I

a score=-4704.000000
s ce10.chrX              5862585 50 + 17718866 -----------------------CTAGCTATTTTCATATTTATTTATAAT-----------------TTCTAATTTTTGAAAATCGAAAC
s cb4.chrX              11201498 54 + 21540570 -----------------------ttatctatttttttcgtCGGTTATCATTATAATCAATGAGTTCAGTTCAATT-------------AC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2546291 38 -  4500979 -----------------------CttactatttttttagttaacaGTTAT----------------ATTTTAATT-------------AT
i caeRem4.Crem_Contig0  I 1492 C 0
s caeSp111.Scaffold626    376849 66 -  1189296 GTCTACATCTCCACCTGAAATATGTTCCCATTTTGCTTTCCAGCTTTCCC---------CTAGT--GCTTCAATC-------------TT
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4125323 934 +  4147112 I
e caeJap4.Scaffold18137    27528 1143 -   658288 I

a score=2772.000000
s ce10.chrX              5862635 4 + 17718866 GCTT
s cb4.chrX              11201552 4 + 21540570 GCTT
i cb4.chrX              C 0 I 16
s caeRem4.Crem_Contig0   2546329 4 -  4500979 GCTT
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626    376915 4 -  1189296 ATTT
i caeSp111.Scaffold626  C 0 I 17
s caeJap4.Scaffold18137    28671 4 -   658288 GCTT
i caeJap4.Scaffold18137 I 1143 C 0
e caePb3.Scfld02_0       4125323 934 +  4147112 I

a score=216295.000000
s ce10.chrX              5862639 327 + 17718866 TGCTTCACTTTT-------------TGCTTCGTGTG---CTTTCC-----------------TTATTGTG------GCTT-CATAGGTTGT---TGCTCTTGGTCGCTTCTGTGACGAACC--CGCAATGCCGACGACTTGTGGATTTCCGAACTGCAAATTTCGCTCTCGGTATCGTGGTCTTGAAGACAATCGCCATTTCTATCGAATCCCAAAAAGACCGCTTATTTTACGACAGAGGTGGCTCACCGCAATTGGAAGAACTGAAGAGACGGTTGTTTCACAGGTAAAT--GTAGCTGACA--GTTTTT---------TGCTTTTGGTTTTTGCACAGCT--AAAAGTGCAAACTC-TTATGCATGGCCTAATGGTTTTCATAAT
s cb4.chrX              11201572 322 + 21540570 gatttttt------------------------tgtgaattctcTCT----------------TTATTGTG------GCTTATCTAGGTTAT---TGCTTCTGTTCGCTTTCGTGGCGGAACCGCGCAATGCCAACAACTTGTGGATTTCCAAACTGCAAGTTTCGCTCTCGATATCGTGGCTTAGAAGATAATCGTCATTTTTATCGCATACCAAAACGACCGCTTGTTTTACGACAGAGGTGGTTGACAGCAATTGGGAGGACAGAAGAGACAGTAGTTTCACAGGTAAAA-ACTGGCTCAAC--GCTTCTGT-------ATCTATTGTATGTAGCA----AT-TATAGTGCAAACCG-TTGTGCATGGTCCGCTGCCTTTT-TGGA
i cb4.chrX              I 16 C 0
s caeRem4.Crem_Contig0   2546344 339 -  4500979 TATTTCTTAT---------------CGCTT-ATGTG---CTTTTAT----------------TTATTGTC------GCTTCCTTAGGTTGT---TGCTTCTGGTCGCTTTTGTGACGGAAC--CGCAATGCCAACGACTTGTGGATTTCCAAATTGCAAATTCCGTTCTCGATATCGCGGTTTAGAAGACAACCGTCATTTTTACCGCATACCTAAAAGGCCGCTTATTTTACGGCAGAGGTGGCTGACAGCGATAGGAAGGACTGAAGAAACTGTAGTTTCACAGGTAAAGTGATTGCTCAACCAGCTTTTGTGGCAAAAATTCTTAGTTTTTGGCACATCaa-taaaatgcaaattt-ttgtGCATGGCCTAATGATTTTC-TGGT
i caeRem4.Crem_Contig0  I 11 C 0
s caeSp111.Scaffold626    376936 339 -  1189296 tattttcttttt----ctgctcatCTGCTTTTTGTG---CTTTCA-----------------TTATCGTG------GCTT-CATAGGTTGTTGCTGCTTTTGGTCGCTTTTGTGACGGAAC--CGCAATGCCAACAACTTGTGGCTTTCCAAACTGCAAATTTCGTTCTCGATATCGTGGGTTAGAAGACAATCGCCATTTTTATCGCATTCCCAAAAGACCGCTGATTCTGCGACAAAGGTGGTTGACAGCAATCGGAAGGACTGAAGAAACTGTAGTTTCACAGGTAAAA---------AAC--ACTTTTGTAGCGA--CTCTCTCTACTTTGGCAGACTTT-AAAAGTACAAGCTTATTATGCATGGCTCACTGATTTT--CGAT
i caeSp111.Scaffold626  I 17 C 0
s caePb3.Scfld02_0       4126257 328 +  4147112 TGCTTTCTATTT-------------TGCTTAATGTG---C----------------------TAATTGTG------GCTT-CCTAGGTTGT---TGCTTCTGATCGCTTTTGTGACAGAAC--CGCAATGCCAACAACTTGCGGCTTTCCAAATTGCAAATTTCGCTCTCGATACCGTGGCTTAGAAGACAATCGTCATTTTTACCGCATCCCAAAAAGGCCGCTTGTACTACGACAAAGGTGGTTGACCGCAATTGGAAGGACTGAGGAAACTGTAGTTTCACAGGTAAAA----TGATCAGG--GCTTTTGTAGTCG--TTTGCTACACTTCAACACACTTCGGGAAGTGCAAGCTT-TTATGCATGGCCTACTGATTTTA-TGAT
i caePb3.Scfld02_0      I 934 C 0
s caeJap4.Scaffold18137    28675 340 -   658288 CGCTTCACTTTTGGTGCTGT-----CGCTTCAATCg---cttttatcgattttttttccttcccttTGTGCAACTTGCTT-CTTAGGTTCT---TGCTGCTCGTCGCTTTTGTGACTGATC--CGCAATGCCGACGACTTGTGGATTTCCAAACTGCAAATTTCGCTCGCGCTACCGTGGTCTTGAGGACAATCGTCACTTTTATCGTATACCAAAAAGACCGCTTTGTTTACGACAGAGGTGGTTGACAGCGATTGGACGGACTGAAGAAACGGTAGTTTCGCAGGTAATG------TGCAAG--GCTTTCG---------------------GGCGTACT---AAAAGTTCAATGTT-TTGTGCATGGCTCACTGAATTCA-TAAT
i caeJap4.Scaffold18137 C 0 I 509

a score=2301.000000
s ce10.chrX              5862966 61 + 17718866 GTGTGGTGAAACAAAAA---TGTTTAC-------------AAATACTCTGAA---GA-ACGATCACACCACAGACTAGAAA
s cb4.chrX              11201894 73 + 21540570 GTCTGA-GTAGaaaaacctccgcctatttttgaaagcaaaataaaaactcaa---ac-tatacaaa---acaaagcacaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2546683 78 -  4500979 GTGtggtggaaaaaaaaatccgatttcactcgatgtgaaaaaaaaaactcaa---gcAGAGATGAAATCACAAAATACACA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    377275 77 -  1189296 GTGTGGTGATatcgaaaatttatttccccttgatttggaaataaaaattgag---tC-GAGATGAAATCACAAACTACACA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4126585 67 +  4147112 GTGTGGTGATAT--GAAATAAGTTTCCCCATGACT-----------ATTGCGATATA-GGGATAAAACCACAAACtacaca
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29015 509 -   658288 I

a score=136305.000000
s ce10.chrX              5863027 342 + 17718866 AATAACCAATTCGGAAGA--------AACAAGAAAAAAATAAAACAGCTCACAT---AAAAGACAAATG-----TCA---AGATTCAATCTGGCTAAAATCTTCAATTTTCTTATTTT-TTTGTAGCTTCGAATTTGCTCGGCTCACTTTGAAGGAGGCGAGAAGAAAGAAGGAGATATTCCAGTTCCTGATCCGACGGTTTGATATTTTCATAATTGT--------TTGGTAATAAAA-----ATTGAA-ATATTAT----GTTTCAGGTGGATAAGCAGATCAAGATTGAGCTGCCTCCAAAAGAAAGTAAGAACAGTGATCGACGAAGGAAGCAAAACATTCCGGCTAGATTTCCTAGACCAGAGTCGCCGTCAGGT
s cb4.chrX              11201967 312 + 21540570 GAC-----------------------AATACAGACAGTTGTGAGA------------AATAGA-ACtcg-----tgaaa-aaattcaatattttcggaACAtt-aatttcc----ctt-tttctagCTTCGAATCTGCTCAGCACACTTTGAAGgaggagaaaagaaggaaggagATATCCCAGTTCCAGATCCAACGGTAAACAGTCGTCATGAAT-----------------TGAAgct---gtttctgaaattccgaactttTCAGGTAGACAAGCAGATAAAAATTGAACTCCCGccgaaagaaaacaaaaatagtgaCCGACGGAGGAAACAGAACATTCCTGCCAGGTTTTCAAGGCCAGAATCGCCATCAGGT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2546761 341 -  4500979 AACT-------AGAAAACAGCTtctaaataaaataaattttgaacgGCGCATAACATAATGGA-GACAC-----TCAAA-CAataaaattgtctaaaataGTC-AATTTCC----CTTGTTTATAGCTTCGAATCTGCTCGGCTCACTTCGAaggaggagagaagaaagaaggagatATTCCAGTTCCTGATCCAACGGTTTGAAAACTTTATAGATG----------------TTCAGAT---ATTTAC-ACATAATTGATTCTTCAGGTAGACAAGCAGATCAAAATTGAACTACCACCAAAGGAGAGCAAAAATAGTGACAGAAGGAGGAAACAGAACATTCCGAACAGGTTTTCAAGACCTGAGTCGCCATCCGgt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    377352 318 -  1189296 AACTAGAGAAGAGGCAAA--------AACAATCACTATCTTGATACACat----------aga-aaatc-----tga---aaattcaatccatcgaaaatgttcaatttcc----CAT-TTTGTAGCTTCGAATTTGCTCCGCTCACTTTGAAGGAGGCGAGAAGAAAGAGGGCGACATTCCCGTTCCTGATCCAACGGTTAG-------TATAGT------------------CAAAGTTCCATTTAAG-AGGTTTC----TTTTCAGGTCGACAAACAGATAAAAATCGAGTTACCGCCAAAAGAGAGCAAAAATAGTGATAGGAGGAGGAAGCAGAATATTCCAGCAAGGTTTTCAAGACCGGAATCTCCGTCAGGT
i caeSp111.Scaffold626  C 0 I 285
s caePb3.Scfld02_0       4126652 324 +  4147112 aa---------agaaaac--------aacaattcaaGTTTAAGAACATACAC-----AGGAGA-GAATCGTCTGTGAAACAAATCAGATCTA---GGAATGTCAAATTTCC----TAT-TTTGCAGCTTCGAATCTGCTCGGCTCATTTTGAAGGAggcgaaaagaaagaaggagatatTCCAGTTCCCGATCCATTGGTTCG--------Ataattt-------------caatgaagttttAATTTAC-AGTTCACG---TTTTCAGGTAGATAAGCAGATAAAAATAGAACTTCCTCCAAAAGAAAGTAAAAACAGTGACCGACGGCGGAAGCAGAATATACCAGCAAGGTTTTCAAGGCCTGAATCCCCTTCGGGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    29524 311 -   658288 ----AATAGCCAAGCTAA--------AATAAGCCGAAACTAttaaaacaag------aaaaga-aacaa-----TGT---ACAT--------------------ATTCACC----TAA-TCTTCAGCTCCGCATCTGCTCTGCTCACTTCGAAGGAGGCGAGAAAAAGGAAGGCGATATTCCAGTGCCGGATCCAACtgtttg--atttttattgcctttttctttgtttgcaatgcatttcattttgat------------tttacAGGTAGACAAGCAAATCAAGATAGAGTTGCCTCCAAAAGAGAGCAAGAACAGTGATAGAAGACGAAAACAG---ATACCCGCTAGATTTCCACGTCCAGATTCTTCGTCAGGT
i caeJap4.Scaffold18137 I 509 C 0

a score=-3176.000000
s ce10.chrX              5863369 13 + 17718866 TAGTATTATCTTC
s cb4.chrX              11202279 12 + 21540570 ATGTGTATCTTT-
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2547102 13 -  4500979 cagtttcaatttc
i caeRem4.Crem_Contig0  C 0 I 405
s caePb3.Scfld02_0       4126976  9 +  4147112 CAGTTTTAC----
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    29835  9 -   658288 TGGTTCTTT----
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    377670 285 -  1189296 I

a score=546.000000
s ce10.chrX              5863382 2 + 17718866 TT
s cb4.chrX              11202291 2 + 21540570 TT
i cb4.chrX              C 0 C 0
s caeJap4.Scaffold18137    29844 2 -   658288 TT
i caeJap4.Scaffold18137 C 0 I 1264
e caePb3.Scfld02_0       4126985 0 +  4147112 C
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-9567.000000
s ce10.chrX              5863384 229 + 17718866 GTCTTCAGTTTCTGTATATAATTTTTTGTTTGCTTATTTGGG-TGGAATACTTATAGAGA-TGTAGTTCAAATGACG-TCTAAAAAAATTAGAGCCGCTAATTTTATTTTATGTTAACTTAGCAATGCATTTCGACTTTTTTTAGTATAAAATATCATGCAACTAATCGAAAAATATCGCAGACATTTGGTAAATTATTTTTCAAAAATT--GAAAATTTAAATACTGTCAATT-
s cb4.chrX              11202293 140 + 21540570 ATTGACAGCTAAGTGgtaaa-------atatttgtattttgt-ttaaaaatatgGAGAAAGTTTGGTTCCGTTGAGA-----ACAAAA--------GATCTATGAGTTTTGGT-------------------------------------AGT------------------------------------GTAgactctttttcgaaaatttcgaaaaatcgggtagTAATAATT-
i cb4.chrX              C 0 I 76
s caePb3.Scfld02_0       4126985 163 +  4147112 ------AGCTTTCCAGAACA------TGTATTAAGATTCAgtgttgaaaatttcgagataATAGAATTCGAATGAAAGTTTTACAAAATGCAAGTGGCTCCATTCATGTTACTTGAA---AGC-------------------TAATATAAAAT------------------------------------GCAAACTATTGAACTCAAACTATTCATTGCTGTTCAG--ATAAATT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-477.000000
s ce10.chrX              5863613 95 + 17718866 AGGTCTGT-------TCTTCCATTGCTTTTTTGTATGACAGTTTGATAGGAATGGATTTCTAATAAAGGAATCAATTTTCGA--ATTTCTGGTTTGACTCTCAA
s caePb3.Scfld02_0       4127148 78 +  4147112 AGGTTTGcatgaaaactttctgaagatcttttttctcatgttcttat--------attttt-----ggaattcaattttcgcttatttttg-------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e cb4.chrX              11202433 76 + 21540570 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-27854.000000
s ce10.chrX              5863708 618 + 17718866  
s cb4.chrX              11202509 632 + 21540570  
i cb4.chrX              I 76 C 0
s caePb3.Scfld02_0       4127226 552 +  4147112  
i caePb3.Scfld02_0      C 0 I 48
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-296.000000
s ce10.chrX              5864326 61 + 17718866 TCAGACAGC----------TTTCGATTTTGAACTATAATAGTCATAGTT------TCAAAATCAATA-GTTCAAAAAG
s cb4.chrX              11203141 78 + 21540570 TTAGACGTCACTGAACGCATTTAGATATAATCCGATACCAGATAAATTTACGTCGTCGTCGTCCATAGGCTTAAACAG
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4127778 48 +  4147112 I
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=49.000000
s ce10.chrX              5864387 13 + 17718866 TTTAAATCAAGTA
s cb4.chrX              11203219 13 + 21540570 CTTGACTTGGGCA
i cb4.chrX              C 0 I 35
s caePb3.Scfld02_0       4127826  8 +  4147112 TTTAAAtc-----
i caePb3.Scfld02_0      I 48 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-940.000000
s ce10.chrX              5864400 60 + 17718866 TTGAGAAGAATGTCCTCGCGCTTATAACACCTTATAAAATGATAATCTTGAACTAGAGAA
s caePb3.Scfld02_0       4127834 36 +  4147112 ----------tgtttctatttttat---tcccTGT-CAATAATGACCTCA----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e cb4.chrX              11203232 35 + 21540570 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-2302.000000
s ce10.chrX              5864460 27 + 17718866 ----ATTTTAATTCACATTC-CATTTTTGCGG
s cb4.chrX              11203267 17 + 21540570 ----GTTTTCATTCATAGCAA-----------
i cb4.chrX              I 35 C 0
s caePb3.Scfld02_0       4127870 20 +  4147112 CTAACTTCCCTTAcctattt------------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeSp111.Scaffold626    377670 285 -  1189296 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=-5211.000000
s ce10.chrX              5864487 25 + 17718866 ATTTTCAAATTGATTTCATTCAG------AG----------
s cb4.chrX              11203284 30 + 21540570 AATGTC-AGCCGAATCTTTTCATCTATCCAA----------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    377955 18 -  1189296 -----------------ATTCTT------Aaacttcttttg
i caeSp111.Scaffold626  I 285 C 0
s caePb3.Scfld02_0       4127890  7 +  4147112 ------------------ttcat------aa----------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I
e caeRem4.Crem_Contig0   2547115 405 -  4500979 I

a score=54.000000
s ce10.chrX              5864512 1 + 17718866 T
s cb4.chrX              11203314 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2547520 1 -  4500979 t
i caeRem4.Crem_Contig0  I 405 C 0
s caeSp111.Scaffold626    377973 1 -  1189296 a
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4127897 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    29846 1264 -   658288 I

a score=58381.000000
s ce10.chrX              5864513  99 + 17718866 TTTCAGGTGACAGTCCATCGTACTCAAAGAAGAGCCGGAGTTTTCGTGACTTCTATCCTTCATTATCATCAACTC---CATCATTTGGTAAG---TACTTTTTC----------------------A
s cb4.chrX              11203315  96 + 21540570 TTACAGGAGACAGTCCTTCATACGCCAAAAAGAGTCGAGCATTCCGTGATTACTATCCT---CTATCCGCGACAC---CATCATTTGGTTAG---TTTAATTTC----------------------C
i cb4.chrX              C 0 I 19
s caeRem4.Crem_Contig0   2547521  95 -  4500979 tttcaggtgACAGTCCttcatattcaaaaaagagtcGGAGTTTTCGAGATTTCTACCCTTCACTATCATCAACAC---CGTCATTCGGTTAG---T----TTTC----------------------C
i caeRem4.Crem_Contig0  C 0 I 78
s caeSp111.Scaffold626    377974  87 -  1189296 ttccagGTGACAGCCCTTcttattcaaagaaaagcCGCAGTTTTCGTGACTTCTAC---------TCATCGA------ATTCATTTGGttag---ttctctttt----------------------t
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4127898 121 +  4147112 tttcaggtGACAGTCCTTCATATTCCAAGAAAAGCCGAAACTTCCCTAATTATTACCCTTCATTATCCTCGACAC---CTTCCTTCGgttag---tttcttttcattttattacaGGTTGGGTAAGT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    31110 105 -   658288 ttaCAGGCGACAGTCCATCGTATTCGAAAAGAAGCTGCAATTTCCGCGACTTTTACCCTCCATTATCATCCACTCCATCATCATTTGGTGAGCCAtttattttc----------------------c
i caeJap4.Scaffold18137 I 1264 C 0

a score=-15514.000000
s ce10.chrX              5864612 47 + 17718866 ------CAACTTGTTT---------T---TCCCCCAAAAAATTGTCTTTCTCA------CCATTAATAGCT
s cb4.chrX              11203430 42 + 21540570 ------CTGCCATTCCGGAGAAGGGT---ACTTCTGAGAATCGTAAAAACC--------------------
i cb4.chrX              I 19 I 30
s caeSp111.Scaffold626    378061 48 -  1189296 ------ctgccaAATT---------T---ATTTATGGGAACAAGGTGAACCCA--TCAGATGCTAGTA---
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4128019 50 +  4147112 ------TTACGAACTC---------T---TACCaaaaaaaGTAGGTAAACCGAACTACGACATTACTT---
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    31215 42 -   658288 cattttccacTCCTTT---------TAGATTCTGTGGCATTTATGTATGCT--------------------
i caeJap4.Scaffold18137 C 0 I 13
e caeRem4.Crem_Contig0   2547616 78 -  4500979 I

a score=241227.000000
s ce10.chrX              5864659 347 + 17718866 GTAGCTGTCAACAAGTTAGTTAC-CCATATCAAATGTGTCTTATAAA-----GACAAGTAGGC-AAAGGGGAGGTCGAGAT---------GCTTCTTCAATGA---------ACCACTAGG-AAAAAAGGCACGCACCGTCGTCGTTGT-CCACTTTATTGGAGCATAAAATGTGAAAAAGGCTCCTTATTCACCGCCTTCTTC------------------------------------------------TCCCTTTTGTCTCATTGTTG--------CTCCAATGGCGTGTCAGATGTCTAAACGAGAACATGTTT--AAAAATGAAATA-AGGAAATGTGTGGGTATGTGTATGTGTGTGAAACATTACTTTGCCATCTTCTCACTTCAACCGAATATCTTTCACGGCGATCAGCATTACC-GT---CTGTTT
s cb4.chrX              11203502 404 + 21540570 AGTGCTGTCAACAAGTTAGATAC-CCATATCGAATGCATTTTATGAA-----GAGGAATT-TC-CAA--AGAGGTTGGCGCCGTCGGGAGGCTTCTTCAACGA---------ACCACTACTCCTAAAAGACACGCAC---CATCGTTGTCCCACTTTATTGGAGCATAAAATGCGAAAAAGGCTCCTTATTCAccgccttcttcttcctttcgCTCTCCATCTTCCTCCGGGGCGTCCTTCTACTCTTTTTGACCCTTTTGTCTCATTGTTGCATTTGCTCTCAATTGTCGTGTCAGATGTCTAAACGTGTACAtgttt--aaaatgaaaataggaaaaatg--------ggTATGAGCGTGTGAAACATTACTTTGCCAATTTCTCACTCGAACCGGATATCTTACATGGCGATCTTCATTACC-TTCACCCCTTC
i cb4.chrX              I 30 C 0
s caeRem4.Crem_Contig0   2547694 359 -  4500979 GTCGTTGTCAACAAGTTAGATGC-CCATATCCAATGTATTTCATGTA-----GTGGAATTGCC-CAA--AGAGGTCGGAAAGAAgggggggCTTCTTCAATGA---------ACCACTACT-CGAAAAGACACGCAC---CATCGTTGT-CCACTTTATTGGAGCATAAAATGCGAAAAAGGCTCCTTATTCaccgccttcttcttcttctc----------------------------------------cccctTTTGTCTCATTGTTGCATTTGCTCTCAATTGTCGTGTCAGATGTCTAAACGTGTACATGTTT--AAAATAACGAGA-CAAAAATG--------GGTATAAGTGTGTGAAACATTACTTTGCCAATGTCTCACTCGAACCGGATATCTTACACGGCGATCTTCATTACC-TT---CCGTCT
i caeRem4.Crem_Contig0  I 78 C 0
s caeSp111.Scaffold626    378109 363 -  1189296 AATGCTGTCAACAAGTTAGATAC-CCATATCCAGTATCTcttataaaaaaagaagaaattgccGAAA--AGAAGTCGGC-----------GCTTCTTCATCgaactactactactactact-caAAAAGACACGCAC---CATCGTTGT-CCACTTTATTGGAGCATAAAATGCGAAAAAGGCTTCTTATTCACCGCCTTCTTCccgttt------------------------------------------ttccttttgtcTCATTGTTGCATTTGCTCTCAATTGTCGTGTCAGATGTCTAAACGTGTACatgtttgaaaaacgaaataa-tGGGTATG--------AGTGTGAGTGTGTGAAACATTACTCGC-CAATTTCTCACTCGAACCGGATATCTAACATGGCGATCTTCATTACCTTT---CCATCT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4128069 343 +  4147112 GTCTACGTCAACAAGTAAGATACTCCATATCCAGTGTGTCTTATATA-----AGGAAATGGCC-ACT--AGAGGTCGTC-----------GCTTCTTCAATGA---------ACCGCTACT-CGAAAAGACACGCAC---CATCGTTGT-CCACTTTATTGGAGCATAAAATGCGAAAAAGGCTCCTTATTCACCGCCTTCTTCTC----------------------------------------------CCCCTTTTGTCTCATTGTTGCATTTGCTCTCAATTGTCGTGTCAGATGTCTAAACGCGTACATgttt--aaaataaaaaga-agaaaatc--------ggTATGAGTGTGTGAAACATTACTTTTACAATTTCTCACTTCAACCGGATATCTAACATGGCGATCTTCATTACC-TT---CAGTCT
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    31270 327 -   658288 GCAGCGGTCAACAAGTTAGATAC-CCATATCTTCAGTTTCTTATTGA-----GCGAAATGTGT-TGG--AGCGAGCGAGCGGCCCGG---GCTTTTTCAATGA---------ACCACTTGC-CTA----GCCATCGT---TGTCGTCGT-CCACTTTATTGGAGCATAAAATGCGAAAACGGCTCCTTATTCAGTGCGCTCGGTGCGCG-------------------------------------------CCCCTTTTGTCTCATTGTCGCA--TGCTCTCAATTGTCGTCTCAGATGTCAAAACGTGTACATGTGT---------------GAAGAAGG-----------------GTgtaaaacattatttt--catttcttctcACGAACTAGATATCTTCTACGACGATCTTTGCAGCC-TTCGTCTGTCT
i caeJap4.Scaffold18137 I 13 I 319

a score=14912.000000
s ce10.chrX              5865006 62 + 17718866 C-ACACTTTTATTTCCT------TTTTTGTCTGTTCGT--CTTGTGATCGCG---TTCTTGAATTACCAAAACT-
s cb4.chrX              11203906 73 + 21540570 TGACACATA-GTCTcctcccgtttttttttctatttgttgCGTGTGGTCACGATATTCTTG-ttgttcaaaactt
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2548053 55 -  4500979 TGACgctca--------------tctttttttgtttgt--cgCGTGGTCAGG---TTCTTG-TTGTTCAAAACTT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    378472 56 -  1189296 CGACAc-----tttac-------ttcttttttgtttgt--cgCGTGGTCACG---TTCTTA-TTgttcaaaact-
i caeSp111.Scaffold626  C 0 I 224
s caePb3.Scfld02_0       4128412 59 +  4147112 Tgttacttt--tttcc-------tttcttcttgtttGT--TAGGTGGTCACG---TTCTtg-ttgttcaaaact-
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I

a score=-1437.000000
s ce10.chrX              5865068 4 + 17718866 ATCT--
s cb4.chrX              11203979 2 + 21540570 --tt--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2548108 4 -  4500979 --ATTT
i caeRem4.Crem_Contig0  C 0 I 255
s caePb3.Scfld02_0       4128471 4 +  4147112 tttt--
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeSp111.Scaffold626    378528 224 -  1189296 I

a score=-14238.000000
s ce10.chrX              5865072 177 + 17718866 GACCTGTACACTCAAC----AAAATATCGACAAAAAAAAGAGATTATTAGTCCGAGAGAAAACAAGTGTGA--------ATTGGGTACACT--------------------TTGAAAAATA----ATATAATTGAAAACTTAATA--AAAAGATGTTTCAATTACTC-------------ATTTATTGTAAGTCTTGA---------GCTCTTCCGAAAGCG----------------------------------------------GCAAAAAGTTTAAAC
s cb4.chrX              11203981 125 + 21540570 aaactaTATATCTAGT---------------------------------------------------------------TTTCCCCAAACT--------------------GCGGAAGACA--------------TATCTTTATC---------TCATCAATCAACT--------TGGCAAGTTACGGTTACTCCCAC---------ACCACATTGAAATCA-----------------------------------TTTGATTAGTGGCAAACTGATAAGAC
i cb4.chrX              C 0 I 172
s caePb3.Scfld02_0       4128475 264 +  4147112 ------catatataGTTATTGACAGATAGataggaaaaag-------------gagaaaaagtgacAGCAACTAATAAATCTCACTGAATTTACGGTCTTTATACAATAAGGCGGAAGAAAACGCCTCTCATAGTTAACTTCATACTAACTAAGTCTTCTGTCGGTTTTTTACAATGAGAAATTCtggttgtttttgtttttggatggCTATGTAAAAATAACAAGTAATATATCAAACCTAGAACCTACGTACAGCTTGGTGTGTTAGATGATTTATGGAAT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeSp111.Scaffold626    378528 224 -  1189296 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-45.000000
s ce10.chrX              5865249 203 + 17718866 ATTTTATAAAGTAGCTTTGaaatttt-----------atatt----ataaaaaattCCAAATTAAGGTGAAATCTGAAATTTTGTCACCTAGTGGAAAAAACTGTGGTGCCTTATTAGACTTGCACTCATATGTACTT--TGGCGGTTTAATTTTTTATTTCGGTTTTCATTAAA-------TCTACCAAAAAATGTTCCACTGTAATAATGCTGAAAAAACATTTT
s caePb3.Scfld02_0       4128739 194 +  4147112 ACCTGATAGAacatttttcatacttttcaaaaagatgataTTGAagatatgaaattgaaaaatgaagt-agatctgaaa-----------attggatagaATAGT------------AAAATGCactccatttttctgaatagtgGTATAGAAAATTGTGAGAGTTATGATTGAGAAAACCTTTTCccataaaac---------taaaatttttgagagaacaTATG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I
e cb4.chrX              11204106 172 + 21540570 I
e caeSp111.Scaffold626    378528 224 -  1189296 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-7354.000000
s ce10.chrX              5865452 133 + 17718866 ------GTCCATACATTGTTAGTTATAT--ATTTTTCATATACGTTGCCAAAGTAGTGAAAGGGATGCAATTATAGTATGGAGATTACTGTAATACATTTTTACTCATGGGTCACAAAAAACCCCACAAAAAAATGAAACT
s cb4.chrX              11204278  91 + 21540570 ------GTCTATA-AAGGTGAGTGATAAGGGTACTTAACGTCT------------TCGGTATCAATTCAATTat---------gttttaataaaaaattct---tcatCGGCTATGGCAAGT-------------------
i cb4.chrX              I 172 C 0
s caePb3.Scfld02_0       4128933  79 +  4147112 GCTCGAGTTTCAA-AGTATGAGTAGAAA--GTTCCAA------------------TTAGAACTGActcaaatac----tgaaaaattgaaaaaaaaat-------------------caaact------------------
i caePb3.Scfld02_0      C 0 I 27
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeSp111.Scaffold626    378528 224 -  1189296 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-1091.000000
s ce10.chrX              5865585 43 + 17718866 AACTATCTATGCAAAATAGGTCCGCTACAGAGTCGTTAACATT
s cb4.chrX              11204369 16 + 21540570 GAACATTCAT--AAAACG-------------------------
i cb4.chrX              C 0 C 0
e caePb3.Scfld02_0       4129012 27 +  4147112 I
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeSp111.Scaffold626    378528 224 -  1189296 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-8656.000000
s ce10.chrX              5865628 142 + 17718866 TTAGATTTAAGACTAAACTCGGTCTTTTTTAATTTAATAATTCAAAA-----CCGG---------CATGATTTATTTTATATACG------CTATATTATGA--AAAATTGGG-------------CATTTTATGACAGTTTGTGGTAATTAAAACAACAATCTAAATTACTGCTTT--------
s cb4.chrX              11204385 124 + 21540570 --AAATCTTAGCAGGAAATCATGTTTCCATCGTTTCACTATTCAAGT-----CTAGCTACAT---CATGAATT-TAGTGTATACGAATGTTTTA----------GTAGTTCTT-------------CATACCTGCAGA-TTCATAGGATTCA------------------CAGTTTC--------
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4129039 166 +  4147112 -------TTAAATGAAAGCCTTCTT--CATC-TTTGATGATTAATGTAGCGACTAAGTACTTGCACAtgatat-ttcgaaattaaaagATTTTATATAATGAGGAGAGCTCTTGAATATTCATAACAATATTTCGACA-TTAGTTGTTATCAAAA-------TTGgacttcagttttttgttatc
i caePb3.Scfld02_0      I 27 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeSp111.Scaffold626    378528 224 -  1189296 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=2426.000000
s ce10.chrX              5865770 11 + 17718866 AATTTTGTCAT
s cb4.chrX              11204509 11 + 21540570 atgtttgcaat
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    378752 11 -  1189296 Aagtttcccat
i caeSp111.Scaffold626  I 224 C 0
s caePb3.Scfld02_0       4129205 11 +  4147112 atttttctcat
i caePb3.Scfld02_0      C 0 I 74
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-2453.000000
s ce10.chrX              5865781 38 + 17718866 CGTTGCGGGAACATCGAAAGAATTTT--TTCTATCCTATA-----
s cb4.chrX              11204520 33 + 21540570 ------------ttttgaagaatcctAGAGCTGTTCATAGTTTGT
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    378763 25 -  1189296 -----------tttttcgaaaactct----cTTTCCAATA-----
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4129216 74 +  4147112 I
e caeJap4.Scaffold18137    31597 319 -   658288 I
e caeRem4.Crem_Contig0   2548112 255 -  4500979 I

a score=-3213.000000
s ce10.chrX              5865819 39 + 17718866 AAATTGAAATCATTTACACAAAAGTATTATTGAAC--ATTT
s cb4.chrX              11204553 22 + 21540570 ---------TTGTTTGC-------T-CTATTTAAT--GTCT
i cb4.chrX              C 0 I 1
s caeRem4.Crem_Contig0   2548367 40 -  4500979 AAGCTAAAACAATCTGCATTCAAAT-GTATTTGTTTCGTCT
i caeRem4.Crem_Contig0  I 255 C 0
s caeSp111.Scaffold626    378788 25 -  1189296 -----AGAACCATTTACATattgtt-ttatt----------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4129216 74 +  4147112 I
e caeJap4.Scaffold18137    31597 319 -   658288 I

a score=-20811.000000
s ce10.chrX              5865858 216 + 17718866 TGTT---------TCATCGAA----------------TAAGATC----TTCAATTCCATGTCAATTGATAATCTTCTTTTTCTCGCATT--TCCATTCCTAATCGACACAAAAT-------CGGGTTGAACAAGGATT--ATTCGCATCGAGAAAAAAGGCATCTATTTTT---------------CCGAAA-------------CGAAAAACTTAGATCT---GTAAAT---CGATCATGCTTGGACCC---ATAAATCTAGAGTTAGCGTGTGCAGTTT----CGA-------TGTAGAGAC
s cb4.chrX              11204576 244 + 21540570 TGAC---------ATAGTGAA-----ATTATCCGGTGTCAATCCTGAATCTgacccttcttt--tttctgaactccTGATTCT--AATT--CCTATTCCCAATCAAACCAAAGA-------CGGTTTAAGACCAGATT--ATTCA----GCACACAATAcgacttcttttttgaatttctttgaCGGCAAAAACAATTCTCCAGTTTGAg----aagatct--caaaaat---ccattaCTGATTCAGTC---TCGTGGCTCA-----------ACGGTAA----GGAGTGAAAGAGCAGAAAC
i cb4.chrX              I 1 C 0
s caeRem4.Crem_Contig0   2548407 220 -  4500979 TGCC---------AAAATAAATCAGTCCTATTTAGAGCAAATCC----TCTTATTCTTATGC--TTACTGA--TTCCTATTCC--AATT--CTAAATTCTAATCGAAATGAAAT-------CGGTTTTAGGACGGATT--ATTCG----GCACACAAAAAGATATTTCtttcgaa-----------gaaaaa-------------tggaga---aagatCTTCCGAAAAT---CGATCATTTATTCATTC--GTTGAGTCTCACGGG-------CCGTTTC----GGA-------AGCAGAAAC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    378813 201 -  1189296 tgtt---------ttataGAA-----CCTAC------TCAATCC----TCTTATTCCGA--------------TTTCTATTCC--GATT--CTTATTCGGAATCCAAATGAAATATCAAATCGGTTTTGGCCAGGATT--ATTTG----GCACACAAAGCGATTCTCGTGT---------------GAAGAA-------------TAAGAATCCTGGATCT---GAAAGTCTATCATCTTTTATTTTGTCTGTTAAAGTTT-------------GAGTTTA----GGA-------AACAAAGAC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4129290 206 +  4147112 TGTTCCACCTGGATCAAAGCA-----TCTCC------CAAATCT----TCTTATTCCTA--------------TTCTTATTCC--AAACAAAGTATTCATAATCGAAATGAAATACA--------TCTATACAGAATCGGGTTTT----CTAGA-------ATTATTGGGT---------------ACACAAGTGAtcc------taaaatttcgaaatct---gaaaat-------------tcctgCC---CAAAGTCTCAAAGAA-TGCCAGAGTTCAGCTCGGA-------AGCACAACC
i caePb3.Scfld02_0      I 74 C 0
e caeJap4.Scaffold18137    31597 319 -   658288 I

a score=128615.000000
s ce10.chrX              5866074 382 + 17718866 ATTTATATTCAGTGCGTGATACT--TC-TTGCCTTCTTG---------TCCCCCACTACTAATTGTATTATTTGCCTTTGGGGAATT--GGT-GAATAGAAGGAGTTA-CCAGAA---GCAG-CAGCTGCTTGCAA-AATCGTTT---CACTCTATGTGCACGG------CGTGCTTCTTATCCA------TGATCCCG--------AAGTCA---GTGCCGCCTAGGTGCAAGAGAGCAGAATAAATTTATT--TTT--GAGTTGTCTCTTTTCTATCTC-ACCCCATCCATTCCATTCTAACCATTTTCGCCGAAG--------------CTTCATCTCATTTTTAAGCGCATCTTTAGATT------CACCGCGTTTTTGACTGCTTCTGTTTGTAATAATGAAGTCGGCACTCATCT-TTGTCCAATCTGTCTTTCTCCTTCCTCCATTCG
s cb4.chrX              11204820 381 + 21540570 ATTTATATTCAGTGCGTGATACT--TTGTTGTCTTCTTG---------TCCTCC---ACTAATTGTATTATTCGTCATTGGGGAATTCGG---GAATGGAGG----GACCCAGAT---ACAGCCAGCTGCCTT---------TTC---AACGCCATTTGTGGAAGAAGCTGTCCCATCTTATCCCTTCCTCTGATTCTG--------AAGTCAGCGAC----TGAAGGTGCAAGTGAGCagaataaatttatt--ttttagagTTCTT---CCTTTTCCTCTGCTTTCCTC--------CTATTTGCTGTCGCTCGGGACCCGCACATCTTCTTTTATCTTATTTTCAAACACATCGCCAGAAGGATGCTTTTTCGTTTTGTGACTGCTTCGGTCTGTAATAATGAAGTCGGCACTCA-------TCCAATCtgtcttctttctttctt------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2548627 346 -  4500979 ATTTATATTCAGTGCGTGATACT--TC-TTGTCTTCTTG---------TCCTCT---ACTAATTGTATTATTTGTCATTGGGGAATT--G---GGATAGGGG----TA-CCAGAT---ACAG-CAGCTGCTTGCGA-AATGATCC---TGCTTCATGTGCGCGA-----CTTCGCTTCTAATCCGTTTCTTTGATCCTGC---GAAAAAGTCA--------------GTGCAGGAGAGCAgaataaatttctt--ttt--gagttGTC---TTTCTAcctc-acttttctc---------------------ttcaag--------------CTTTATCTTATTTTCAAACGCATCTTCAGATG-----TCTTTAGTTTTCCAACTGCTTCTGTCTGTAATAATGAAGTCAGCACTCATCCTTCGTCCAATCtgtcttccttctttctt------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    379014 365 -  1189296 ATTTATATTCACTGCGTGAtact--tt-ttgtcttcttg---------cCCTCC---ACTAATTGTATTATTTGTCATTGGGGAATT--G---GGATAGGGG----TA-CCAGATACAACAG-CAGCTGCCTGCAGGAATCATTC---TGCTTCATGTATGCGG------TTAGCTCCTTATCCTTTCCTTTGATcccgaaaagaagaagtca---gT----TCTAGGTGCAAGAGAGCAGAATAAATTTCTCCATTC--GAGTtgccttttcttcttctc-actatTTTT--------------GCCCGCGACGGAG--------------CTttatcttattttcaaacacgtcgtcgtcgt----cgccTCGATGCTCTGACTGCTTCTGTCTGTAATAATGAAGTCGGCACTCATCCTCCGTCCAATCTG-------TCTTTCTT------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4129496 347 +  4147112 ATTTATATTCACTGCGTGATACT--TC-TTGTCTTCTTG---------TCCTCC---ACTAATTGTATTATTTGTCATTGGGGAATT--GGAAGGATAGGAG-----G-CCAGAT---ACAG-CAGCTGCTTGTGAGAATGATTCGTGTGCTT------TGCGG------GTTTCATTTTATCCCTTCCCGTGATCCT-----GAAGAAGTCA---AT----TTAAGGTGCAAGAAAGCAgaataaatttctt--ttt--gagttgCC---TCTCCATCTC-ACTATTTTG-----------------CTTGACAGAG--------------CTTtatcttattttcaaatacgTCGTCG-----------CTAGATGCTCTGACTGCTTCAGTCTGTAATAATGAAGTCGGCACTCATCC-CCGTCCAAtctgtcttctttctttctt------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    31916 297 -   658288 ATTCGCGTGCCGTGCATGATGCCCATC-TCTTCCTTTTGGATCTTGCCTGCTCT----CTAATTCTATTATTTATTAT------ATT--AGCGGGAAAGGAA-------TCGAGT---CTAA-CAGCTGTCCATG--AATCACTT---GGTGT--GGCGCGCGG------CGCGCTTCTTATCCT---CTTTGATCCGA--------AAGTCG---GC----GCTAGGTGCAGACAGgcagaataattttttt--tat--tgg--------tgttcacttg-acttttttg---------------------ttaata--------------cttttgattagtttttag----------------------------ttttggctctttctatctttgtttcttCAGT-----TCCATCCATCGTCC-ATCCG---------------------
i caeJap4.Scaffold18137 I 319 I 17

a score=5684.000000
s ce10.chrX              5866456 10 + 17718866 CCTTCCGCCC
s cb4.chrX              11205201  9 + 21540570 ccttcag-cc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2548973  9 -  4500979 ccttccg-CC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    379379 10 -  1189296 CCTTCCGCCC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4129843 10 +  4147112 ccttccgCCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    32213 17 -   658288 I

a score=213765.000000
s ce10.chrX              5866466 438 + 17718866  
s cb4.chrX              11205210 515 + 21540570  
i cb4.chrX              C 0 I 760
s caeRem4.Crem_Contig0   2548982 419 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 11
s caeSp111.Scaffold626    379389 435 -  1189296  
i caeSp111.Scaffold626  C 0 I 10
s caePb3.Scfld02_0       4129853 427 +  4147112  
i caePb3.Scfld02_0      C 0 I 10
s caeJap4.Scaffold18137    32230 332 -   658288  
i caeJap4.Scaffold18137 I 17 C 0

a score=-19005.000000
s ce10.chrX              5866904  98 + 17718866 ATGATCTGGTCTTTTATTCC----------GA---------------TAATCGATAGCTACCCAATTTGATATAAGTATTCAACTTCAAACATCCT---CCAAAAGTCTTTGGAGC--GCACATACGG-------
s caeRem4.Crem_Contig0   2549412  86 -  4500979 Atgattct---------------------aga---------------aaatttcgaac-aaCTACTTCTAGGAAATCTTTCGATTTTATACGTCCT---CCAAAACTCAACTGAGT--CCGCACAATG-------
i caeRem4.Crem_Contig0  I 11 I 7
s caeSp111.Scaffold626    379834  99 -  1189296 Attatccttcttctccttga----AATTGAGA---------------CATTCTACAAG-AATCAATTTTATATGGGC---CTATTGGGT-TGTCCG-----AAAGTTTTTCCGAGAGGACGCACAATG-------
i caeSp111.Scaffold626  I 10 I 7
s caePb3.Scfld02_0       4130290 120 +  4147112 ATTATTCTTCATCCCATTCATTCCAAGTGAGGATCCCCGGAACCACCAACTACACAAG-AATCAATTCTATAAAG-----CTATTTGACGTGTCctcctccaaaacttttctgagC--AAGCACAATG-------
i caePb3.Scfld02_0      I 10 I 7
s caeJap4.Scaffold18137    32562  33 -   658288 ---------------------------------------------------------------------------------------------TCT--------GGTCTGCCGAGT-AGCCCACATCGAGTACGA
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11205725 760 + 21540570 I

a score=92972.000000
s ce10.chrX              5867002 625 + 17718866  
s cb4.chrX              11206485 775 + 21540570  
i cb4.chrX              I 760 I 5
s caeRem4.Crem_Contig0   2549505 739 -  4500979  
i caeRem4.Crem_Contig0  I 7 I 5
s caeSp111.Scaffold626    379940 824 -  1189296  
i caeSp111.Scaffold626  I 7 I 87
s caePb3.Scfld02_0       4130417 771 +  4147112  
i caePb3.Scfld02_0      I 7 I 5
s caeJap4.Scaffold18137    32595 840 -   658288  
i caeJap4.Scaffold18137 C 0 C 0

a score=-18498.000000
s ce10.chrX              5867627  67 + 17718866 AGGAGCTATTGCAAG--------------------AGTTGCGCCAGTTCT----------------AA--CAATTC-----------CAATTTCTCGAA-GCCAGTGTGATTTTTCT
s cb4.chrX              11207265  74 + 21540570 GCAAGTCATCCGCAA--------------------TTTACTTCCTTTCTC----------------AATTCATTCA----AATggt-ctctctctccctctacAGAATAATTGCC--
i cb4.chrX              I 5 I 2
s caeRem4.Crem_Contig0   2550249  72 -  4500979 AAGAGTCTCTTTTAA--------------------TTTGCTTCCTGTTTT----------------CA--CATCCc----gatttt-ctatttctccat-tccagatttatttttg-
i caeRem4.Crem_Contig0  I 5 I 3
s caePb3.Scfld02_0       4131193  72 +  4147112 ACGAGCCATTCGGAGAA---------TTGTCGC--TCAATTCCTTGTTCT----------------TA--CATCTC---------------ctttcctt-ttcaaattttatcctAT
i caePb3.Scfld02_0      I 5 I 20
s caeJap4.Scaffold18137    33435 108 -   658288 ----GGCATTCCAAAGGCTTATTTTCTTTTCGCCACTGGCCTCCTGTTCGGTTCCACGCACACACAAA--CATGCCCGGAGATTGTGCATATTCAtttt-gctttctttctttct--
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    380764  87 -  1189296 I

a score=195810.000000
s ce10.chrX              5867694 641 + 17718866  
s cb4.chrX              11207341 714 + 21540570  
i cb4.chrX              I 2 C 0
s caeRem4.Crem_Contig0   2550324 703 -  4500979  
i caeRem4.Crem_Contig0  I 3 C 0
s caeSp111.Scaffold626    380851 724 -  1189296  
i caeSp111.Scaffold626  I 87 C 0
s caePb3.Scfld02_0       4131285 683 +  4147112  
i caePb3.Scfld02_0      I 20 C 0
s caeJap4.Scaffold18137    33543 698 -   658288  
i caeJap4.Scaffold18137 C 0 I 44

a score=7304.000000
s ce10.chrX              5868335 16 + 17718866 CAGAGTACCTGAGAGA
s cb4.chrX              11208055 16 + 21540570 CAGAATACCTTagaaa
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2551027 16 -  4500979 GTGAATACctgaatga
i caeRem4.Crem_Contig0  C 0 I 188
s caeSp111.Scaffold626    381575 15 -  1189296 CAGAGCACCTGAG-AA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4131968 16 +  4147112 CAGAATACCTGAGAAA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    34241 44 -   658288 I

a score=137.000000
s ce10.chrX              5868351 2 + 17718866 CA
s cb4.chrX              11208071 2 + 21540570 ta
i cb4.chrX              C 0 I 390
s caeSp111.Scaffold626    381590 2 -  1189296 GA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4131984 2 +  4147112 GA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    34241 44 -   658288 I
e caeRem4.Crem_Contig0   2551043 188 -  4500979 I

a score=209.000000
s ce10.chrX              5868353 18 + 17718866 AGTTTGTATAATGATTTA----
s caeSp111.Scaffold626    381592 22 -  1189296 ATTAAGAATGttgaataattca
i caeSp111.Scaffold626  C 0 I 217
s caePb3.Scfld02_0       4131986 18 +  4147112 ATTATAAGTGATGATTTA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    34241 44 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I
e caeRem4.Crem_Contig0   2551043 188 -  4500979 I

a score=512.000000
s ce10.chrX              5868371 12 + 17718866 TTGTGCAAGAGC
s caePb3.Scfld02_0       4132004  9 +  4147112 ---TGTAAAAGC
i caePb3.Scfld02_0      C 0 I 422
e caeJap4.Scaffold18137    34241 44 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381614 217 -  1189296 I
e caeRem4.Crem_Contig0   2551043 188 -  4500979 I

a score=0.000000
s ce10.chrX              5868383 562 + 17718866  
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e caeJap4.Scaffold18137    34241  44 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381614 217 -  1189296 I
e caeRem4.Crem_Contig0   2551043 188 -  4500979 I

a score=1045.000000
s ce10.chrX              5868945 28 + 17718866 GTACGTCTCATCTCCTCGCTCATTACTG
s caeRem4.Crem_Contig0   2551231 22 -  4500979 GTCCATCTCAT------ACTCATTACTG
i caeRem4.Crem_Contig0  I 188 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e caeJap4.Scaffold18137    34241 44 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381614 217 -  1189296 I

a score=-852.000000
s ce10.chrX              5868973 16 + 17718866 CATTTCTCCTTGAACC
s caeRem4.Crem_Contig0   2551253  9 -  4500979 CAT-----CCGCAA--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    381831 15 -  1189296 CATTACTGCTTCAAC-
i caeSp111.Scaffold626  I 217 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e caeJap4.Scaffold18137    34241 44 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I

a score=10283.000000
s ce10.chrX              5868989 63 + 17718866 TCAAAACCAG----------TCAATCGCGTGTCATGAG----GGTACAACACGAATGGCAATAAAATTAAGGGATGG-
s caeRem4.Crem_Contig0   2551262 59 -  4500979 --AGAACC------------TCAATCGCGTGTCATGAG----GGACATGCGTGTATGGCAATGAAATTAAAGGATGA-
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    381846 60 -  1189296 -CAAAACC------------TCTTTTGCATGTCATCCG----AGTACGACATGTATGGTAATAAAATTACGAATTGG-
i caeSp111.Scaffold626  C 0 I 97
s caeJap4.Scaffold18137    34285 78 -   658288 tcaaaaacagaaacaCGGGTCCAATCGCGTGACATGCAAAACGACATGACACGAATGGCAATAAAATTAGGGGAAtga
i caeJap4.Scaffold18137 I 44 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e cb4.chrX              11208073 390 + 21540570 I

a score=1328.000000
s ce10.chrX              5869052 72 + 17718866 -------CGGGGGGACGAGATGAAGATGAAGAAT--------ACATGGGAAATGGGAAAGGAGCAAATCTCAGTACTAGCAACATAA
s caeRem4.Crem_Contig0   2551321 66 -  4500979 -----------gagacaaaatgaaaaaggatgGG--------AAATTGTGCATAAGAAAAGAGCAAATCTCAAAACAAACTGGAC--
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18137    34363 78 -   658288 aagagaaaagaaggacAAGATGATGAGGAAAAATGGGGCGCAGAACagaatagagagagagagaaaatcGCAACATAA---------
i caeJap4.Scaffold18137 C 0 I 701
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381906 97 -  1189296 I

a score=-1621.000000
s ce10.chrX              5869124 189 + 17718866 GTATTAGTTGTGCCTTTTGGATTAGATTTTTTGGAGGGTCTAGGACGTATCTCAAAAGTTATTTTTTATACTATTACCATTTTACTTTTAAACATACAAAAACATAATTCCCAGGCCTAATGTAGATTTGCAAAATTATTTC----TAATTTTGTGATACTACCTAAGTAACATTCATCTAAGGGCCCTTATC
s caeRem4.Crem_Contig0   2551387 112 -  4500979 -------CCGTGTCCTTTACAT-ATCGTATTTATACGTTTTAAAATGTCATTCAAAAGG--------GTACCACTA----TTTATTTCtaag-----aaataaatga-----------aatat------------ttatttcggttttgttttttga---------------------------------atg
i caeRem4.Crem_Contig0  C 0 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e caeJap4.Scaffold18137    34441 701 -   658288 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381906  97 -  1189296 I

a score=627.000000
s ce10.chrX              5869313 7 + 17718866 AATATAT
s caeRem4.Crem_Contig0   2551499 7 -  4500979 aaaaatt
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18137    35142 7 -   658288 aatatat
i caeJap4.Scaffold18137 I 701 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e cb4.chrX              11208073 390 + 21540570 I
e caeSp111.Scaffold626    381906 97 -  1189296 I

a score=-96.000000
s ce10.chrX              5869320 1 + 17718866 T
s cb4.chrX              11208463 1 + 21540570 t
i cb4.chrX              I 390 C 0
s caeRem4.Crem_Contig0   2551506 1 -  4500979 a
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18137    35149 1 -   658288 t
i caeJap4.Scaffold18137 C 0 C 0
e caePb3.Scfld02_0       4132013 422 +  4147112 I
e caeSp111.Scaffold626    381906 97 -  1189296 I

a score=351581.000000
s ce10.chrX              5869321 579 + 17718866  
s cb4.chrX              11208464 615 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2551507 590 -  4500979  
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    382003 583 -  1189296  
i caeSp111.Scaffold626  I 97 C 0
s caePb3.Scfld02_0       4132435 577 +  4147112  
i caePb3.Scfld02_0      I 422 C 0
s caeJap4.Scaffold18137    35150 557 -   658288  
i caeJap4.Scaffold18137 C 0 I 1

a score=1000.000000
s ce10.chrX              5869900 1 + 17718866 G
s cb4.chrX              11209079 1 + 21540570 G
i cb4.chrX              C 0 I 2
s caeRem4.Crem_Contig0   2552097 1 -  4500979 G
i caeRem4.Crem_Contig0  C 0 I 94
s caeSp111.Scaffold626    382586 1 -  1189296 G
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4133012 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    35707 1 -   658288 I

a score=-26.000000
s ce10.chrX              5869901 8 + 17718866 AAAAATGA
s cb4.chrX              11209082 8 + 21540570 AGGAATGA
i cb4.chrX              I 2 I 90
s caeSp111.Scaffold626    382587 8 -  1189296 CGGAATGA
i caeSp111.Scaffold626  C 0 I 64
s caePb3.Scfld02_0       4133013 4 +  4147112 CAAA----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    35707 1 -   658288 I
e caeRem4.Crem_Contig0   2552098 94 -  4500979 I

a score=828.000000
s ce10.chrX              5869909 46 + 17718866 CGAAACAGCGTAATTGCAGAGTACCAACAAAGCACAAAATATACTT
s caePb3.Scfld02_0       4133017 38 +  4147112 -GAAAC-------Ttgtagaaatccaaaaatggaaaacaaatattt
i caePb3.Scfld02_0      C 0 I 25
e caeJap4.Scaffold18137    35707  1 -   658288 I
e cb4.chrX              11209090 90 + 21540570 I
e caeSp111.Scaffold626    382595 64 -  1189296 I
e caeRem4.Crem_Contig0   2552098 94 -  4500979 I

a score=0.000000
s ce10.chrX              5869955 484 + 17718866 AaaaggaagagtaacggtttcgggtattttgaacgtatacacacaaaaagtgctcaaattgatgaatttcgtaattaaacttctcaaaaaattttcagcaattttttacggcggttcaaattttgaaaaataatgggcaaattttagctgaactttccaatttcggtcatttttccgtgccacagcggtcagaagttgatttttgaaaaattcctttcctgtatattttgataatttgaaccactttgtttcgttaattaagatacttttaaaaccaaaaattattgaaattggttacttatcgccttaaaatTCAATTCTAAAATAAAgattttagtaaaaattgaccaggtttttcgaaatttttgaaccgtcatgaaaatgtttgaaaaaatcttccaaaagttttattacgaaattcgttcatttgagcacattttggatttattagttttaaatacccagaaccgtAACTTTCCCATAA
e caePb3.Scfld02_0       4133055  25 +  4147112 I
e caeJap4.Scaffold18137    35707   1 -   658288 I
e cb4.chrX              11209090  90 + 21540570 I
e caeSp111.Scaffold626    382595  64 -  1189296 I
e caeRem4.Crem_Contig0   2552098  94 -  4500979 I

a score=331.000000
s ce10.chrX              5870439 34 + 17718866 ATAAGCAAAACTTAATCAAGCAAATTACCTTCTT
s cb4.chrX              11209180 28 + 21540570 ATAACCAGAATCGAACCAAACTAAAAAC------
i cb4.chrX              I 90 C 0
e caePb3.Scfld02_0       4133055 25 +  4147112 I
e caeJap4.Scaffold18137    35707  1 -   658288 I
e caeSp111.Scaffold626    382595 64 -  1189296 I
e caeRem4.Crem_Contig0   2552098 94 -  4500979 I

a score=304.000000
s ce10.chrX              5870473 2 + 17718866 AT
s cb4.chrX              11209208 1 + 21540570 -T
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4133080 2 +  4147112 AT
i caePb3.Scfld02_0      I 25 C 0
e caeJap4.Scaffold18137    35707 1 -   658288 I
e caeSp111.Scaffold626    382595 64 -  1189296 I
e caeRem4.Crem_Contig0   2552098 94 -  4500979 I

a score=54.000000
s ce10.chrX              5870475 1 + 17718866 T
s cb4.chrX              11209209 1 + 21540570 T
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    382659 1 -  1189296 T
i caeSp111.Scaffold626  I 64 C 0
s caePb3.Scfld02_0       4133082 1 +  4147112 A
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    35708 1 -   658288 T
i caeJap4.Scaffold18137 I 1 C 0
e caeRem4.Crem_Contig0   2552098 94 -  4500979 I

a score=150992.000000
s ce10.chrX              5870476 154 + 17718866 TTGCAGGTGTTAAATGAAGCTGTGGCGGCACTCATGTATCACTCTATTAAGCTGGAAAAAGAAGATTTAGAAAAGTTCAAAGTTTTAAAAGTTGTATTTCGTATCGGGTACGGAATCGACAATATCGATGTAAAAGCTGCAACTGAATTGGGTA
s cb4.chrX              11209210 150 + 21540570 TTGCAGGTATTGAACGAAGCCGTTGCTGCCCTAATGTATCACTCCATTAAACTTGAAAAGGAGGATCTGGAAAAgttcaaacttctgaaagttGTTTTTCGTATCGGATATGGAATTGATAATATTGATGTGAAAGCTGCTACTGAATTG----
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2552192 154 -  4500979 tttcaggtGTTGAATGAAGCGGTGGCAGCATTGATGTACCACTcaataaaacttgaaaaggaggatctggaaaagttcaaagttctgaaagttGTCTTCCGTATTGGGTATGGAATTGACAACATTGATGTGAAAGCAGCAACTGAATTGGGTA
i caeRem4.Crem_Contig0  I 94 C 0
s caeSp111.Scaffold626    382660 154 -  1189296 TTCCAGGTACTCAATGAAGCGGTGGCTGCACTCATGTATCATTCGattaaattagaaaaagaggatctggaaaagttcaaattatTAAAAGTGGTGTTCCGTATTGGGTACGGTATTGATAATATTGATGTGAAAGCAGCAACTGATTTGGGTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4133083 154 +  4147112 TTCCAGGTGTTAAATGAAGCTGTAGCTGCACTGATGTATCATTCCATCAAACTGGAGAAAGAAgatttggaaaagttcaaacttcTAAAAGTTGTGTTCCGTATTGGGTACGGTATCGACAACATCGATGTGAAAGCCGCAACTGATTTGGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    35709 154 -   658288 CTTCAGGTTCTCAATGAAGCCGTTGCGGCGCTCATGTATCATTCAATCAAACTTGAGAAAGAGGATTTGGAAAAGTTCAAAGTGCTAAAAGTTGTTTTCCGTATTGGGTACGGAATTGACAACATTGACGTCAAAGCGGCCACAGATTTGGGTG
i caeJap4.Scaffold18137 C 0 I 51

a score=-6494.000000
s ce10.chrX              5870630 31 + 17718866 T----------CTTCGATTCAGGAAACGCTTGATTGAATAA
s caeRem4.Crem_Contig0   2552346 35 -  4500979 TGC--TAATGCTATTAGGGTACAATGTTCcaatttaa----
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    382814 37 -  1189296 ATCAGTGATATCTCTGATAGATTCAATAAGCATTTGA----
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4133237 34 +  4147112 CTCTATTA---CTTTGGAAAACTAAATTacaattaga----
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    35863 51 -   658288 I
e cb4.chrX              11209360  0 + 21540570 C

a score=127701.000000
s ce10.chrX              5870661 140 + 17718866 TTTCTATTTCAGGTATTGCTGTGTGCCATGCGCCTGGTGACTATGTGGAAGACGTCGCCGATTCTACACTTTCTCTGATATTAGATCTTTTTAGAAGAACATATTGGCATGCAAAATCTTATAGTGAAACCAGAAAGGTA
s cb4.chrX              11209360 129 + 21540570 -----------GGTATTGCAGTTTGTCATGCACCAGGAGACTATGTGGAAGATGTAGCTGATACCACACTTTCTCTAATTCTAAACATGTTCCGTAGAACATACTGGCACGCTAAATCCTATACTGAAACAAGAAAGGTG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2552381 137 -  4500979 ---taatttcaggTATTGCTGTATGCCACGCACCGGGTGACTACGTGGAAGATGTTGCGGATTCCACACTTTCATTGATTCTTGACTTGTTTCGCAGAACGTATTGGCATGCCAAGTCTTATACTGAAACCAGAAAGGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    382851 134 -  1189296 ------TTTCAGGTATTGCTGTATGTCACGCTCCGGGTGACTACGTGGAAGATGTCGCTGACTCCACACTTTCTCTTATTTTAGACTTGTTTCGTAGAACATACTGGCACGCCAAGTCCTATAGTGAAACCAGAAAGGTA
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4133271 138 +  4147112 --tttttttcaggtattgCTGTGTGCCACGCTCCGGGTGATTATGTTGAAGACGTCGCGGACTCCACACTTTCTCTAATATTGGACTTGTTTCGTAGAACATACTGGCACGCTAAATCTTATAGTGAGACCAGAAAGGTA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    35914 140 -   658288 TCCCAATTTCAGGTATTGCTGTGTGCCACGCGCCAGGTGATTACGTGGAGGAAGTCGCCGATTTTACACTTTCTCTGATTTTAAATTTATATCGTAGAACATATTGGCATGCAAAATCGTTCAGCGAGACTAGAAAGGTA
i caeJap4.Scaffold18137 I 51 I 831

a score=-15389.000000
s ce10.chrX              5870801 37 + 17718866 AAA---------TAATTCTTAAAACATGCAA-----------TTTCA-ATACATC-GGA
s cb4.chrX              11209489 41 + 21540570 ATTCGAAAATCGCAATCTTT---TTGTTCAT----ATCactctttca-----------t
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2552518 36 -  4500979 TTT---AGTTCAAattctct---tgatt--------------tttcaactaaaac---t
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    382985 41 -  1189296 ttc---------tatttcat---ttgttAGATGGGTT-----TCTCACTTGCTCT-CGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4133409 36 +  4147112 --C---------TATTatct---ttgttcaa----at-----tttcacataAAATGCGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    36054 831 -   658288 I

a score=447141.000000
s ce10.chrX              5870838 654 + 17718866  
s cb4.chrX              11209530 659 + 21540570  
i cb4.chrX              C 0 I 24
s caeRem4.Crem_Contig0   2552554 642 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 37
s caeSp111.Scaffold626    383026 643 -  1189296  
i caeSp111.Scaffold626  C 0 I 28
s caePb3.Scfld02_0       4133445 656 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    36885 687 -   658288  
i caeJap4.Scaffold18137 I 831 C 0

a score=-21552.000000
s ce10.chrX              5871492 422 + 17718866 TGTCAAATTCTGCAAAATTTTGCGTACTTTTGTTTTGTACGAGTTTGAAAGTT----GTTTTCAATTGATAAAAGTGTAATTTATGTGCAgtatttgctaaattagtatcgcaccccattttcaactttgtcagcttatatctcagctgtaaattgtaatatTTTTATAA---------ATATTAGTTTACAACTATTTTCAAGTTTGAACACAGAAAGAATTAATCTTAGATCAGTAAAAAATGTCTGTTAAAGATTTTC-GCTGACCGACTTTTAAAATTACGGTCAATGAACAATGAGCTTTTATT------ACTTTTCGACTGCACATAAATAATTGCAAAAATTTTTGAAGAATTCAACTATAACCCAATCATTTTAGAACTT----TTTTATACAGTTTCAATACTGACGAGAGAATAAGAAAACCACGACTCTAACATA
s caePb3.Scfld02_0       4134101 162 +  4147112 ----------------------------------------Gaatttgagaa---------------taataaaagagaga-------------------aaa--------------------cgaagtcatcagtttg-------------------aatattttcacag---------ATAAT------------------------------------------------TCTGTA------GTATTTGGACGATTTGt-gct-----------------------------------ccttttttt------atttatc-------------------------------aGAAATTAAACT-----------TTTCTCGCAATT----TTTCACA----------------GCAGGAACA--AAAATTAC--TTATAACAAA
i caePb3.Scfld02_0      C 0 I 3
s caeJap4.Scaffold18137    37572 247 -   658288 -----------------------------CAGCTTTG---GGCTTTGGGAATTTCGGGCAGCTAAATAATTACCgagcaa-------------------aat-------------------ggaaaattatcAG--------------GGGATTTGGCAGATTTACACCGGGGCAGCTCATAGt------------------------------------------------cagata------atgggcagctgattggcagct-----------------------aatgggcagcgaGCATTTTTCCATGAAAATTACC---------TAAAATTCCTACAAAATatacaaaacaataaaat---acaCAAT-TCTCTGataattaatgtttttta-----------------acCAATCA--AACTCTACACTTTT------
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11210189  24 + 21540570 I
e caeSp111.Scaffold626    383669  28 -  1189296 I
e caeRem4.Crem_Contig0   2553196  37 -  4500979 I

a score=0.000000
s ce10.chrX              5871914 1 + 17718866 A
e caePb3.Scfld02_0       4134263 3 +  4147112 I
e caeJap4.Scaffold18137    37819 0 -   658288 C
e cb4.chrX              11210189 24 + 21540570 I
e caeSp111.Scaffold626    383669 28 -  1189296 I
e caeRem4.Crem_Contig0   2553196 37 -  4500979 I

a score=-896.000000
s ce10.chrX              5871915 9 + 17718866 AAAAAAACT
s cb4.chrX              11210213 9 + 21540570 aaacaagtA
i cb4.chrX              I 24 C 0
s caeSp111.Scaffold626    383697 9 -  1189296 AACGAAGTC
i caeSp111.Scaffold626  I 28 C 0
s caePb3.Scfld02_0       4134266 9 +  4147112 ATCTTAACC
i caePb3.Scfld02_0      I 3 I 2
s caeJap4.Scaffold18137    37819 2 -   658288 -------TT
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2553196 37 -  4500979 I

a score=638120.000000
s ce10.chrX              5871924 787 + 17718866  
s cb4.chrX              11210222 792 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2553233 782 -  4500979  
i caeRem4.Crem_Contig0  I 37 C 0
s caeSp111.Scaffold626    383706 804 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4134277 799 +  4147112  
i caePb3.Scfld02_0      I 2 C 0
s caeJap4.Scaffold18137    37821 777 -   658288  
i caeJap4.Scaffold18137 C 0 I 2121

a score=-37602.000000
s ce10.chrX              5872711 282 + 17718866 --------AGTTCTCAGAAAAATATTTT------TTGTTTAAATGTT-CTCGAGGTTGTGACA-------------------ACTTTTTATATTAATGTG-TTTTC--------------TTTTTTCTCCCTTTAACTGTTTTTA-ATCTCTCCATTCATCTCAG---------------GAGtataatttt----ttttaa--tttcaatttttaaaCAACCCACTCGTCGAACTCCAAACAACGAA----CCTAGTTGAACCAAATAGCTATTTTTAACCCTTAATAATTTTTATTTTATGAATTCAATTCTAAACAGCTTTAAAAAATAACAATAATAACTCATTAAATG-------TACT--------
s cb4.chrX              11211014 243 + 21540570 --------CCTATTCAATGTTgtgtttcttgaaatttttaaataact-cTTGCGGTTGTGAA--------------TCTTCTAACTGGCTTACTaccaac-ttttt--------------aaaattatatat--------------AT-ACTCGATATCTCACTGTGTTACATCCC----ctaaacaatttt----tgtaacTGTCTTGATTTTGA-------------------TTCCGATTTTCCCCACAAAATGTTGCCACGACTCTATTTTTG-----------------------ATGAAACCATTTCCACCgagctttaa-----------aataatttctcaaatt-------tact--------
i cb4.chrX              C 0 I 108
s caeRem4.Crem_Contig0   2554015 287 -  4500979 --------CCca-----------gttttccaatgttttAAATTAATA-ATTGTGgttgtgaaatttgaattgcACCTCTACTAATT---TTTctaacaag-ttttttttctttgctcatctaacttcttcttct---------ca-at-atttgatttctcaaaaagaaaaactcaggAGTTTAACagtattaaaatttcaatttctcgatttcca-------------------TTTCGACAACGACCATCCCGTTTAGtaataattagtttttttaaaatct-------aaaataTCCATGTATTCAATTATAATCAGCTT----------------TAACCTCTTATACTCCGTTACCACT--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    384510 248 -  1189296 --------TCTA--------CACGTTTT----TATTGTTAATAATTT-TATGTGGTTGTGACATTTGACTTGATATTT----AATTCTCATACTAATACTCTTTTC--------------TGTGTTATTTCATT----GCTTCTACAG-TTTCCATTTACAACAA---------------GCTCAGGACATT----TACTTATTCTCCGATTCCA------------------------AACAACGAAAAC-CCGTTTAGTAAGATATAGTGTTT--TAACCCA-------TTTCTGCCTatgaattcaatgattttcagCTT----------------TAACCTACCACTTT-------TACAT----AAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4135076 261 +  4147112 GACAACATTTCg--------cgtgtttttttcttttgccaataatttgtttctggttgtga-attcatttttatggtc------tttttttcctaatacT-TATTC--------------TGTGTTATTTATCT----CCATGCA-AT-TCTCCGTTTTCAA---------------------Tatgacatt----caaaaaagtctcGATTTCAT-------------------TTCCGACAACGAAAAC-CCGTTTAGTAAGATTTAGCTTCTCATAACCCA------TTTTCTTcttatgaattcaattttatgcAGCTT----------------TAACCT--CACTTT------GTACGTTACAAGT
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I

a score=-12551.000000
s ce10.chrX              5872993 109 + 17718866 ----------GGATTGTCGAACAAATACGAACTCGAATTTGTAAGCCACCTTCAATTTTTCCTGGTTAATTTCACATTTTTTAAAAATATATTGCATGCAAAATTTCTGAATTTTCTCG
s caeRem4.Crem_Contig0   2554302  79 -  4500979 ---------GCAATTG-TTCAGCAATACTA--CAAACACTTTGAGCCATCCCACACATTT---------TCCCTTATTTCTCA-----TTACTAT--------------GACAGTTTCG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    384758  75 -  1189296 TTA----ATGTTATT--CACATAGATATT----GAACATCCTGAGCCATTCATAAC-------------TCTCAAACTTTTC-------TATGAC--------------ACCTCTTTTg
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4135337  63 +  4147112 TTGTAACATGCTATT--TTAAT------------AACTTCTCAAGCCAATTTTAACatta-------attctaaaaattttc-----------------------------------cg
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211257 108 + 21540570 I

a score=15689.000000
s ce10.chrX              5873102 152 + 17718866 CGCATTT---CTAAGATA------CCTCATT--TTCGTCCTC------------TCAGATT-AAATCATCAGTATTAAATTT---------------------------TAGAATGCGCTTTCCGGTTT--CCAACAAAACCAACTTCGCACATTTT---TTTCAAACTCAACCT---CTACTAGATTCATTTATTCTTCTTTCGATTTTT
s cb4.chrX              11211365 188 + 21540570 TGCATTTTTCCTATGGTA------CCTCATTTGTTATTTCTC---AGTCATAATTCTTATC-----TAACagtattaattttcaaaaaatatgttttgccTCAAAAGTATAATATGCAGTATCCGGTTCTTCAAA-GAAACCAACTTCGCCTA---A---TTTCCCTCTCACAGTTCCACACTCAAACAATTTG--CATTTTCATAGTTCT
i cb4.chrX              I 108 I 1920
s caeRem4.Crem_Contig0   2554381 150 -  4500979 CGCATTT---CTTTGATA------TCTCATT--TTCGTTCTc------cacaatttt---------------taataatttt-----------------------actTTAGGATGCGCTATCCGGTTC--CCAA-TAAACCAACTTCGCAaa---acattttcccatttttacttcttttttaaaatagtttatcCATTTTCACACCGTC
i caeRem4.Crem_Contig0  C 0 I 7
s caeSp111.Scaffold626    384833 166 -  1189296 cgcattt---tcaaaatcctcCCTCCTCAAT--TTTGTTCTCTTATGTTCTTGCTCtcatc---aattgaaattttactTTT----------------------------AGAATGCGCTATCCGGTT---CCCA-AAAACCAACTTCgccgatttt---tttcttctctaaacta--tttttaaaccattttttttcttgtcttccTCTT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4135400 161 +  4147112 cGCATTT---CTAAGATA------CCTCACT--TTTGTTGTCCGACTTCATTAttcactctgaaaataacaGTATTATTCTT----------------------------AGAATGCGCTATCCGgttg--tcaa-aaaaccaacttcgCCGA---A---TGTCCCCCTGAAACTG--TTACGAAACttattttttagtgttttctctttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I

a score=1506.000000
s ce10.chrX              5873254 25 + 17718866 -----------------CCTCATTTGAATTTGTTTT---TAATTT---
s caeRem4.Crem_Contig0   2554538 31 -  4500979 -----------------TCCGATTTGCATTTGATTTCTCCGATTACTT
i caeRem4.Crem_Contig0  I 7 C 0
s caeSp111.Scaffold626    384999 29 -  1189296 CA--------ATCGCGAACCGATTTGCATTT--------TGATTT---
i caeSp111.Scaffold626  C 0 I 326
s caePb3.Scfld02_0       4135561 45 +  4147112 catacTTCCTTTCACAATCCGATTTGCATTTgatttctccgattt---
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I

a score=-69.000000
s ce10.chrX              5873279 23 + 17718866 ---TTTCACA----AGTCATAATAAATATG-
s caeRem4.Crem_Contig0   2554569 27 -  4500979 ---TCTCAAACTTGACTCACAATAATTATG-
i caeRem4.Crem_Contig0  C 0 I 265
s caePb3.Scfld02_0       4135606 24 +  4147112 ttctaTTAAA-------GATAATGATTTTGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I
e caeSp111.Scaffold626    385028 326 -  1189296 I

a score=464.000000
s ce10.chrX              5873302 5 + 17718866 TGAAT
s caePb3.Scfld02_0       4135630 5 +  4147112 TGAAT
i caePb3.Scfld02_0      C 0 I 7136
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I
e caeSp111.Scaffold626    385028 326 -  1189296 I
e caeRem4.Crem_Contig0   2554596 265 -  4500979 I

a score=0.000000
s ce10.chrX              5873307 870 + 17718866  
e caePb3.Scfld02_0       4135635 7136 +  4147112 I
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I
e caeSp111.Scaffold626    385028 326 -  1189296 I
e caeRem4.Crem_Contig0   2554596 265 -  4500979 I

a score=155.000000
s ce10.chrX              5874177 118 + 17718866 TATGTAAATATGATTTTAAAAATATCAAAAAAG-------TAAGATAAGAATATTAAACATTTTATCATGCCCTCAGCCTAAAAAACGTTTTCTGCTTTCATTTCTATTCTTGTATTTTTCTAAG
s caeSp111.Scaffold626    385354  99 -  1189296 TGTGAAAATATACgcattgaaattcaaaaaaaacactttttaaCATAAAAGGATTGAACtttctat-------------tgaaaagtgaaa-ctGTCTTCACTCTTGATA------------ACG
i caeSp111.Scaffold626  I 326 C 0
e caePb3.Scfld02_0       4135635 7136 +  4147112 I
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I
e caeRem4.Crem_Contig0   2554596 265 -  4500979 I

a score=325.000000
s ce10.chrX              5874295 39 + 17718866 AAAAGCGAGAACAAACAGATATCAGTGGGGGTGTGGAGG
s caeRem4.Crem_Contig0   2554861 29 -  4500979 -aaaaatgatagaaatggaaatcagtgaaa---------
i caeRem4.Crem_Contig0  I 265 C 0
s caeSp111.Scaffold626    385453 31 -  1189296 GAAAGTTTGCataaatagaaaacattgatga--------
i caeSp111.Scaffold626  C 0 C 0
e caePb3.Scfld02_0       4135635 7136 +  4147112 I
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I

a score=2592.000000
s ce10.chrX              5874334 82 + 17718866 GTAATTCAATTAAAACCAACATCAAGAAAGCTTCTT--------------TCAACCAAGAAATACTCATATTCATACCCCCGCTCAACACCACTGA
s caeRem4.Crem_Contig0   2554890 60 -  4500979 -cgattcaatta-----aaaatcgaCAACGCTTCTTCCTCCTT---------------GAACT--TTACATTCAT-----CAGACTAC--------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    385484 77 -  1189296 --atttcaatta-----gACATCAGCaacgcttcttcttcttcct---tctttacCTAAAACT--TTCCATTCAT-----CAGTTTTCCCCCCT--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4142771 87 +  4147112 GCATTTCAATTAAAGCTAACATCACACAcgcttctccttttttctctccttttacCGAGAatc--tttcattcat-----tcatcagTATGCCC--
i caePb3.Scfld02_0      I 7136 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I
e cb4.chrX              11211553 1920 + 21540570 I

a score=11982.000000
s ce10.chrX              5874416 27 + 17718866 CCTCGTTCCGCTCAACACCACTGA-CCT
s cb4.chrX              11213473 27 + 21540570 CTTCATTCCGCTCAACGCCACTTA-GGG
i cb4.chrX              I 1920 C 0
s caeRem4.Crem_Contig0   2554950 24 -  4500979 ---CCTTCCGCTCAACGCCACTTA-CGG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    385561 23 -  1189296 -----TTCCGCTCGACACCACTTATGGG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4142858 23 +  4147112 -----TTCCGCTCAACGCCACTTATGGG
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    38598 2121 -   658288 I

a score=238280.000000
s ce10.chrX              5874443 715 + 17718866  
s cb4.chrX              11213500 751 + 21540570  
i cb4.chrX              C 0 I 15
s caeRem4.Crem_Contig0   2554974 737 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 48
s caeSp111.Scaffold626    385584 710 -  1189296  
i caeSp111.Scaffold626  C 0 I 843
s caePb3.Scfld02_0       4142881 695 +  4147112  
i caePb3.Scfld02_0      C 0 I 140
s caeJap4.Scaffold18137    40719 740 -   658288  
i caeJap4.Scaffold18137 I 2121 C 0

a score=-56469.000000
s ce10.chrX              5875158 136 + 17718866 CCATTCCG--CATATCAT--------TGATG----------------TTAGGATCATCTAGCA----TCTAC-----CAGAATTTTTCCTTTCTCTGA---------------------------------------AT-TCTAAAAAACTGATGGTC-----------------------------TTATATGAGGTAGTATTTGGT-----GTATCACATATG--------------------------------------------T----------------AATGTCATATTTTATTAGC
s cb4.chrX              11214266 275 + 21540570 ----------CATATCATG-------TTGTAGTTTTCTAGGATTCTGTTTAGATGGTTTAACA-AGTActtt-----tgatggttttttttctttctgcaaCTTAT--GAAGTCCATCTAGACCAAGGATAGTTCT-AT-ACATGATAGACCCTTCTCAAAACGTCAGTAACatttctcattattttttccgTAATTTGAATGCAAATGAT--GTAAAAAATAGGActccgaaattttagaaaacatgtgatcattaaaatttcaaaaattttggtactTGCTTTGCAT-TAACATTTCATTACT
i cb4.chrX              I 15 C 0
s caeRem4.Crem_Contig0   2555759 234 -  4500979 TCGTTCTTTTCATATTATGACCATTTTTATACTTCAGTAACATCCT-TCCAAATAATATAACCTTGTTACTC-----TAATCtatgtactttttttgaaagttttt--gaatt---------tcaaaaatgtatctgAT-GCTCAAAAGCACATGACCAAAGTATTAAAG-----------------TTTTATAAGTTAGATGTTGTTgcttatcaaaaaatctg-----------------aacatcAGTGTATCAAA--CCCAAAAAt----------------cat-tctcacttttttgaa
i caeRem4.Crem_Contig0  I 48 C 0
s caePb3.Scfld02_0       4143716 212 +  4147112 TCACTCTCTCCATATTAC--------TCTTTTCATTCTAAGATTAT-TTATAATAACTCAAATTCATCCTTTATTCATAAAACCTTTCCTCGTTTTTATAACT----------------------------GTTCttatcatttgaaaatccaa---------------------------------ttttgtgttttcgttgCGTGT-----TTGGAACATCAA--CCTGAAGTTCTAA--AGCTCATGtctatgaaaatttcatcagt--------------tgcatgtttcttctttttttc
i caePb3.Scfld02_0      I 140 C 0
s caeJap4.Scaffold18137    41459 170 -   658288 ------------------------TTTTAAATACTTTCCTTATTTG-CCTTATTTGttcaacactttttttt-----cccaatctTTTACCAATTCAATTTCATATTCGAATC------------------------AC-ATTTCATCACTCA----------------------------------CTATGTATTCCGATCAAAGGTGA---ATGGAATACTtc--------------------------tcatttatttttccacGAA----------------AGT-CCATATTTTGTAAGT
i caeJap4.Scaffold18137 C 0 I 201
e caeSp111.Scaffold626    386294 843 -  1189296 I

a score=-14049.000000
s ce10.chrX              5875294  77 + 17718866 T-CTGCAT------ACCTCA------------------------------CTCATTT---------TAAAAACTCTGC-------------------TCCAACCCTTTCCGAGAAACTAATTCTGGAG--CACAGATAAAATCT---------------
s cb4.chrX              11214541 129 + 21540570 TGCTCGAGTTTCAAACCTCAAATTTTATCTTCAAATCGTGATGCTCATAAAACGTTTTcgccattttgaaaaatgttccaga-----------aatattcgaa--actcatcaaattgtttttgtgag--caacaacaacaaat---------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2555993 115 -  4500979 tactgGAG------ACTAGAGATTTTCT----------------------GCCATTTTTCCCATTATCAAAACTCTACCATAgcatttcta-taattttcggACTCCTCCTCAAAACGATTTCTCGAGTCCATTATTCGCGATT---------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4143928 134 +  4147112 ttcaagaa---------tcACATCTCTTTCTCACTTTGG-----------TTCAGTTTTTACA---TGAAAACTACTTTATAGAATCGAAACTCATCTTcgaac-tcttccaaaaacgA-TTCTTGAGCCCATTattcttcattgttttgatAGAAGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    41629 201 -   658288 I
e caeSp111.Scaffold626    386294 843 -  1189296 I

a score=18025.000000
s ce10.chrX              5875371  83 + 17718866 ----------------GCAAAAC--TTTGTTTATA--TTCTTTCTGAAGTACTGCCTT------------CCATTCACGCATCTTT------TCCCAATTCTTCCCGTTT------TCACCGTTGGT
s cb4.chrX              11214670 109 + 21540570 attttt-----------cggGTTTCTCTGTTCATATCTTTCTATTGAAGTAcctcttccatttttcctc-GAAACGATGCAtattttc----tcctattt--tcccGTTCAACACATCTACTGAAGA
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2556108 106 -  4500979 GTTTCTGTTGGAAGCGACGAGAT--TTTGTCCATATATTCTTTGTGAAGTACCT------------TCC-AAAACGACgcatcttttctctttcctatTTTCTCCCGTTT------TCCACGCGAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    387137  84 -  1189296 ----------------GCAAACT--CTCGTTCATA--TTATTCCTGAAGTACCACCAC------------AAAACGACGCatcttct-----tcccattttctccCGTTT------TCCACGCAGGA
i caeSp111.Scaffold626  I 843 C 0
s caePb3.Scfld02_0       4144062  95 +  4147112 -----------------GAGATT--TTTGTTCATA--TTCTTCCTGAAGTACCACAACCACTACCGCTCTAAAACGACGCatcttct-----ttctattttctcccGTTT------TCCACGCAGGA
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    41629 201 -   658288 I

a score=48797.000000
s ce10.chrX              5875454 54 + 17718866 GAAAGTCATAGTTCTTCAGATGACCACCACTTACGAA-----TTG--TCTGTATAATTATG--
s cb4.chrX              11214779 54 + 21540570 GAAAGTCATACTTCTTCAAATGACCACCACTTCCAAA-----TAT--CCAGTGTAATTATG--
i cb4.chrX              C 0 I 8
s caeRem4.Crem_Contig0   2556214 55 -  4500979 GAAAGTCATACTGCTTCAAATGACCACCACTTACAAAG----TGT--CCAGTGTAATTATG--
i caeRem4.Crem_Contig0  C 0 I 32
s caeSp111.Scaffold626    387221 56 -  1189296 GAAAGTCATACTCCTTCAAAAGACCACCACTTACAAG-----TGTGGCCAGTGTAATTATG--
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4144157 54 +  4147112 GAAAGTCATACCTCTTCAAATGACCACCACTTACAAA-----TGT--CCAGTGTAATTATG--
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    41830 61 -   658288 GAAAGTCATGCTTCTTCAAATGACCACCACTTACAGAATGGCCGT--TCAATCTGACTATCTG
i caeJap4.Scaffold18137 I 201 C 0

a score=-9239.000000
s ce10.chrX              5875508 35 + 17718866 GTGAAGTAG------AGAATACGCCGTT-----CTCCTCTAGGTGA
s cb4.chrX              11214841 28 + 21540570 GCGAGACGGTTGGGAAAAgcgttgaaaa------------------
i cb4.chrX              I 8 I 9
s caeSp111.Scaffold626    387277 19 -  1189296 ----AATAGT-----GAGATGTTCAATT------------------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4144211 21 +  4147112 ----AATAG--------GATGTTCAATTGGGGT-------------
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    41891 21 -   658288 -----GTAGTCTT--GAGATTTCTAGTT------------------
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2556269 32 -  4500979 I

a score=171765.000000
s ce10.chrX              5875543 456 + 17718866  
s cb4.chrX              11214878 472 + 21540570  
i cb4.chrX              I 9 C 0
s caeRem4.Crem_Contig0   2556301 452 -  4500979  
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold626    387296 462 -  1189296  
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4144232 452 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    41912 316 -   658288  
i caeJap4.Scaffold18137 C 0 I 136

a score=16082.000000
s ce10.chrX              5875999 190 + 17718866 AAA-----AACCTGAA------TA--ATCAGGAAGAGAA-------TCTTTTCATGAAGTTTATTTGACATTCAATTCCTAAT------------------------CACCTAATCAAATTAACCCTAGCT---GATCATCACTTTTTGATCATTTG------CTCGGCGGGCACTACTATCCCGGTGCGTG------CGAAATAATCAGTAATGCAAACTCAGTCGCACGCAAGCTTACGTCGGTGTC
s cb4.chrX              11215350 169 + 21540570 AGA-----AAACTGGA-------AACATGATAAGGAA-------TCCAACTTCAAG--------------ACCG--CACTGATTAATTTTCTGGAA----------------GGTTTGATGAACATTTGCTCAATAGCATTAATTCTTGATCGTTTG---CTCCTCATTTTCCGCGCGGTACGT-GGGGGTA-TGCTCCGGAATAATCAGAAAAGTC----------TACAAAGA--------------
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2556753 187 -  4500979 AGA-----AAACTGGA-------A--CTGATTAGAtgcc--ttctcttttttca-----------------------tccgAT---TTTTCTGGTAAAACGTGATCAAAGTCAGTTTACTGAACATTTGCT---TAGcataaatttttgatcatttgacTCGTCTCATTTCCCGCGATGCGCGTGGGGGGTC-TGCTCCGGAATAATCAGAAAAGTA----------CACGGAAGAA------CTTGCC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    387758 158 -  1189296 aga-----gaactgGA-------A--ATGATAAGCCGaggtcttctttttttcacg---------------tCA--CCCTAAT----------------------CAAAGTCAGTTTACTGAACATTTGCT---CAGcataaatttttgatcatttg------CT--TTCCGCGC----------GGCGGTC-CGCTCCGGAATAATCATAAAAGTA----------CACGGAAGAT------ACTACC
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4144684 180 +  4147112 aaacagagaaactgGAACTTAGTA--GTGATAAGACGGA-------CTTTTTCACG-----------TCACTCA--CCTTAAT----------------------CAAAGTCAGTTTACTGAACATTTGCT---CCgcataaatttttgatcatttg------ctCATCTTGCGCAATGCGTGTGGGGGGTCTCGCTCCGGAATAATCAGAAAAGTA----------CACGGAAGGT------ACTGCC
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    42228 136 -   658288 I

a score=10603.000000
s ce10.chrX              5876189 30 + 17718866 GGAACGAACGG---CTTAGATGTATTTCACAGG----------
s cb4.chrX              11215519 29 + 21540570 ----GAAAACACAGCTTAGGCCTATTTCACAAG----------
i cb4.chrX              C 0 I 14
s caeRem4.Crem_Contig0   2556940 30 -  4500979 GAACGAAAAGA---TTTAGGCGTATTTCACAAG----------
i caeRem4.Crem_Contig0  C 0 I 14
s caeSp111.Scaffold626    387916 30 -  1189296 GAACCGATCGA---CTTAGGCGTATTTCACAAG----------
i caeSp111.Scaffold626  C 0 I 38
s caePb3.Scfld02_0       4144864 30 +  4147112 GAATCGAACGA---CTTAGGCGTATTTCACAGA----------
i caePb3.Scfld02_0      C 0 I 12
s caeJap4.Scaffold18137    42364 30 -   658288 -----GAAACA--------GCTTGTTTCACAGTGTTCAACTCA
i caeJap4.Scaffold18137 I 136 C 0

a score=-3708.000000
s ce10.chrX              5876219 23 + 17718866 TTCAAAGCA------GCACGTCACTATAC
s cb4.chrX              11215562 29 + 21540570 TTATAAACCTACGGGAAACcttcctaaaa
i cb4.chrX              I 14 I 32
s caeRem4.Crem_Contig0   2556984 13 -  4500979 tttaaaaca----------------ataa
i caeRem4.Crem_Contig0  I 14 I 21
s caePb3.Scfld02_0       4144906 13 +  4147112 TTCAAAGGG----------------ATAA
i caePb3.Scfld02_0      I 12 I 14
s caeJap4.Scaffold18137    42394 14 -   658288 CTCAAAACA------GAGCG---------
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    387946 38 -  1189296 I

a score=123542.000000
s ce10.chrX              5876242 128 + 17718866 TTGCAGGCACAGAACACCGATGACTTGTCCGTTCTTTTCAACATTTTGCCACCGGTTGAACAACTCGTCTCGGAGATTCCGTACACATTGCCACTGCTGGAAGCGATTTATTTGAAATGTGAATTGGT
s cb4.chrX              11215623 128 + 21540570 TTACAGGCCCAAAATACAGATGACTTATCTGTGCTCTTCAATATACTACCACCGGTCGAACAACTTGTCGCCGAGATCCCTCATACGTTGCCATTACTGGAAGCCATCTATTTGAAATGTGAATTGgt
i cb4.chrX              I 32 C 0
s caeRem4.Crem_Contig0   2557018 128 -  4500979 TTGCAGGCTCAGAATACGGACGACCTGTCTGTTCTATTCAACATCTTGCCACCTGTAGAACAGCTGGTCTCGGAGATACCGTACACTTTGCCACTGTTAGAAGCCATCTATTTGAAGTGTGAACTGGT
i caeRem4.Crem_Contig0  I 21 C 0
s caeSp111.Scaffold626    387984 128 -  1189296 tTACAGGCTCAAAACACAGATGATTTGTCGGTCCTTTTTAATATACTACCACCGGTAGAACAACTTGTCTCTGAAATCCCATACACTTTGCCACTTTTAGAAgcaatttatttgaaatgtgAACTGGT
i caeSp111.Scaffold626  I 38 I 38
s caePb3.Scfld02_0       4144933 128 +  4147112 TTTCAGGCACAAAATACAGATGATTTGTCTGTTCTGTTCAATATTCTACCCCCAGTGGAGCAGCTTGTCTCGGAGATACCATATACCTTGCCACTATTGGAAGCGATTTATTTGAAGTGTGAATTGGT
i caePb3.Scfld02_0      I 14 C 0
s caeJap4.Scaffold18137    42408 128 -   658288 TTGCAGGCTCAAAACACAGAAGACTTGTCGGTTCTGTTCAACATTCTACCGCCCGTTGAACAACTGGTTTCTGAGATTCCGTACACTCTACCGCTCTTGGAAGCGATTTACTTGAAATGTGAACTGGT
i caeJap4.Scaffold18137 C 0 C 0

a score=1097.000000
s ce10.chrX              5876370 2 + 17718866 GA
s cb4.chrX              11215751 2 + 21540570 aa
i cb4.chrX              C 0 I 38
s caeRem4.Crem_Contig0   2557146 2 -  4500979 AA
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_0       4145061 2 +  4147112 AA
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    42536 2 -   658288 GA
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    388112 38 -  1189296 I

a score=380.000000
s ce10.chrX              5876372 4 + 17718866 GGGA
s caeRem4.Crem_Contig0   2557148 4 -  4500979 GAGA
i caeRem4.Crem_Contig0  C 0 I 66
s caePb3.Scfld02_0       4145063 4 +  4147112 GAAA
i caePb3.Scfld02_0      C 0 I 6
s caeJap4.Scaffold18137    42538 4 -   658288 GTGT
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11215753 38 + 21540570 I
e caeSp111.Scaffold626    388112 38 -  1189296 I

a score=311.000000
s ce10.chrX              5876376 2 + 17718866 GT
s caePb3.Scfld02_0       4145073 2 +  4147112 at
i caePb3.Scfld02_0      I 6 C 0
s caeJap4.Scaffold18137    42542 2 -   658288 GT
i caeJap4.Scaffold18137 C 0 I 2121
e cb4.chrX              11215753 38 + 21540570 I
e caeSp111.Scaffold626    388112 38 -  1189296 I
e caeRem4.Crem_Contig0   2557152 66 -  4500979 I

a score=154.000000
s ce10.chrX              5876378 59 + 17718866 CAGTAATAAA--AATTTAACTTGGGAGTCGCATTATGCATATTTGTACGAATTCAGTTTTT
s caePb3.Scfld02_0       4145075 56 +  4147112 cattttcaaatcaactcaattttctacttttgttac-----tctgttcattttcaactttt
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    42544 2121 -   658288 I
e cb4.chrX              11215753 38 + 21540570 I
e caeSp111.Scaffold626    388112 38 -  1189296 I
e caeRem4.Crem_Contig0   2557152 66 -  4500979 I

a score=0.000000
s ce10.chrX              5876437 427 + 17718866 AAATAAAAACCTAATACTTCAAATGCTTAGACTTAAAAAAATTTTCGGTCAAATTTTTTGTGAACAATATTGGTGCCAATTTGTCAAAAGCAAAAAATTGAACTTTTTGTGAAATTTCAGGCGTTGCTGTAGGTTTGAATCCTTTGAATGATTTATTTCAATCAATCAAAACACAATTATATTTTAAAACTCGTAGGAAATTTATTTTTGGTAGATTACCAATATTATAATTGGTAAAAAGTGAGATTTCGCCACATTTTGACTGTTCATAAAAATTTCAAAAGTGTATTTAAAAGCTTAACCAAGCATTTGGACATTTAAGCACAACATGAGCAGCTTTTAACAATATCAACAGTCTGACTAATAAGGAAAACTTGGTACATTTAGAAATTATACAATGTCTGCAATAAACATTTCATGTACCAAA
e caePb3.Scfld02_0       4145131   0 +  4147112 C
e caeJap4.Scaffold18137    42544 2121 -   658288 I
e cb4.chrX              11215753  38 + 21540570 I
e caeSp111.Scaffold626    388112  38 -  1189296 I
e caeRem4.Crem_Contig0   2557152  66 -  4500979 I

a score=910.000000
s ce10.chrX              5876864 1 + 17718866 T
s cb4.chrX              11215791 1 + 21540570 t
i cb4.chrX              I 38 C 0
s caeRem4.Crem_Contig0   2557218 1 -  4500979 t
i caeRem4.Crem_Contig0  I 66 C 0
s caePb3.Scfld02_0       4145131 1 +  4147112 t
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    44665 1 -   658288 T
i caeJap4.Scaffold18137 I 2121 C 0
e caeSp111.Scaffold626    388112 38 -  1189296 I

a score=118186.000000
s ce10.chrX              5876865 213 + 17718866 TTCAGCGAACGGTGGAAGATGGGCTAATTCTGCCGACAAAGGAATTGTGTTGTGAGCAACTATTCTGCCAATTGGTCTGGTGGACAGCATTCTGTGAGCAAAGCAATTCATCAC---TTAAAAAACACTGTGCCATGTTTGCAGTAAGCTTTCTCGTCAT---------------------------TTTTCGTCCTAAC--------GAAATGTGT-------TTCGGAT--------TCTCC--T-------------------------------TTTGAATGTTTTTTT---------TTGTTT
s cb4.chrX              11215792 232 + 21540570 ttcagagaaCTGTTGAAGATGGACTTCTCCTCCCAACCAAGGAACTGTGTTGTGAGCAAGTATTCTGCCAACTCGTCTGGTGGACAGCATTTTGTGAGCAGAGCAATACTGCAAGTGTTAAAAAACACTGTGCCTTGTTTTCGGTAATCCTACA---------------------------------------TACTCGT--------AAACCGGgactcttttttcaaa------acatttac--tTCCTTCAAAACTATCCATTCTT---------CTTTAACATTCT------------GTTTTT
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2557219 259 -  4500979 ttcagagaactgTTGAGGATGGTCTTCTGCTTCCAACAAAAGAACTTTGCTGTGAACAACTATTCTGTCAACTTGTGTGGTGGACTGCATTCTGTGAGCAAAGCAACACGTCCAGTGTTAAAAAACACTGTGTCATGTTCACGGTAAGCCTTCCCATAAC---------------------------TTCTTTTACTCGTTTACATACAAATAGGGA-------TTCGAATTGCatacattttc--ttttctc----cttttttttgttgcttccttcctttcacattccttg---------tttttt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    388150 245 -  1189296 TTTAGAGAAGTGTCGAAGATGGACTCCTTCTTCCAACAAAGGAACTTTGCTGTGAACAACTCTTTTGTCAACTTGTCTGGTGGACTGCCTTCTGCGAGCAGAGTAACTCCTCGAGTGTCAAAAAACATTGTGCTATGTTCACCGTAAGCTTTCTCATAAC---------------------------TTTTCTTACTTAC-----TAGAGAAAGGGA-------tttgcatttcatacatttctcct----------ctcttttttctcacttc----ctttctcatccttgt----------ttttt
i caeSp111.Scaffold626  I 38 C 0
s caePb3.Scfld02_0       4145132 261 +  4147112 ttcagagaagtgtTGAAGATGGACTTCTTCTTCCTACAAAAGAACTCTGTTGTGAACAACTCTTCTGCCAACTCGTTTGGTGGACCGCATTCTGTGAGCAGAGTAACTCCACGAGCGTTAAAAAACACTGTGCCATGTTCACGGTAAGCTTACCCATCAC--------------TTCTTTTTACATGTTTTCATACTTAC----------AAAGGGA-------TTTGCATTTCttacatttct--t----------catttttttctcacttc----cttcagcatccttctctcttcttcgttttt
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    44666 279 -   658288 TTCAGCGTACTGTAGAAGATGGACTACTTCTACCAATCAAGGAGCTCTGTTGTGAACAACTCTTCTGCCAGCTTGTTTGGTGGACCGCGTTTTGTGAGCAAAGTAATACTCTGAGCATCAAGAAGCACTGTGCTATGTTAGCGGTAAGTTTATGCTTCTTTTTTACATGGCGTCTTCCTTTGACGGAATTGCTCTCTTGT-GTTGTGAGGCAAGATA-------ATCAAAT----AACGctttt--tttgtga----cagatttttcacgatgcct--ctttcacttttcttt---------tttttt
i caeJap4.Scaffold18137 C 0 I 297

a score=84989.000000
s ce10.chrX              5877078 176 + 17718866 AAAATGCAAATAGTTGTTCGTGTTCGCGAGCGCTTTTTC--CAGAAAACAGCAGCA--AAAACACGTCGCGTAAGA--------C---TGCGC---AAAATGCATTTTTGCTATT--------TTTC--ACGGC-GGAATTGCTCACTTGT-C--GAGGAGCCGAGAGAAGATAATCAAATAACGTTTTTGTGACGGCGT-----ATGCATCC------
s cb4.chrX              11216024 179 + 21540570 ---ATGTAAATAGCCGTTCGTGTTCGCGcacacttttttt-cag-----------cagaaaacaCGT-----------------C---AGCGCG--AAAATGCATTCTTcctctcgatttttttctgacacaGCAGGAATTGCTTTCTTGTGCGAGAGGAGCTGAGAACAGATAATCAAATAACGTTTCTGTGACGGCGTGT---ATGCATCCCCATTC
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2557478 185 -  4500979 ---ATGTAAATAGCTGTTCGTGTTCGCGCgcacttttttc-cagagagTAACAGAAGGAAAACACGTCGCAAAGC---------C---AGCGC---AAAATGcattctccttctc-------ttttg--ACAGC-GGAATTGCTCTCTTGTGT--GAGGAGCTGAGAGAAGATAATCAAATAACGTTTCTGTGACGGCGTTTCCAATGCATCCTCA---
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    388395 187 -  1189296 ---ATGTAAATAGCTGTTTGTGTTCGCGCGCACtttttttACAG--AGTAACAGAAGGAAAACACGTCGCGAAGCTTCCCCCCTCTTGCGCGAAAGAAAAGGCATTCACT-TCTC--------TTTG--ACAGC-AGAATTGCTCTCTTGTGT--GAGGAGCTGAGAAAAGATAATCAAATAACGTTTCTGTGACGGC-------ATGCATTC------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_0       4145393 186 +  4147112 ---atgTAAATAGCTGTTCGTGTTCGCGcgcacttttttt-cag--agtaacAGAAGGAAAACACGTCGCGTAGCTTCTTTTCTC---CGCGCA--AAAATGCATTCTCT---TC--------TTTG--ACAGC-GGAATTGCTCTCTTGTGT--GAGGAGCTGCGAGAAGATAATCAAATAACGTTTCTGTGACGGCGTTTCCTATGCATCC------
i caePb3.Scfld02_0      C 0 C 0
e caeJap4.Scaffold18137    44945 297 -   658288 I

a score=382719.000000
s ce10.chrX              5877254 478 + 17718866  
s cb4.chrX              11216203 488 + 21540570  
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2557663 476 -  4500979  
i caeRem4.Crem_Contig0  C 0 I 33
s caeSp111.Scaffold626    388582 471 -  1189296  
i caeSp111.Scaffold626  C 0 I 23
s caePb3.Scfld02_0       4145579 482 +  4147112  
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    45242 524 -   658288  
i caeJap4.Scaffold18137 I 297 C 0

a score=300.000000
s ce10.chrX              5877732 1 + 17718866 G
s caePb3.Scfld02_0       4146061 1 +  4147112 G
i caePb3.Scfld02_0      C 0 C 0
s caeJap4.Scaffold18137    45766 1 -   658288 G
i caeJap4.Scaffold18137 C 0 I 39
e cb4.chrX              11216691 0 + 21540570 C
e caeSp111.Scaffold626    389053 23 -  1189296 I
e caeRem4.Crem_Contig0   2558139 33 -  4500979 I

a score=-647.000000
s ce10.chrX              5877733 7 + 17718866 CAATTCT-
s cb4.chrX              11216691 3 + 21540570 -----TTA
i cb4.chrX              C 0 C 0
s caePb3.Scfld02_0       4146062 7 +  4147112 TGATTTT-
i caePb3.Scfld02_0      C 0 N 0
e caeJap4.Scaffold18137    45767 39 -   658288 I
e caeSp111.Scaffold626    389053 23 -  1189296 I
e caeRem4.Crem_Contig0   2558139 33 -  4500979 I

a score=-7274.000000
s ce10.chrX              5877740 429 + 17718866 TCATTATTTGAAAACAAGGGAAAACGTTTTTTTCCATTCTTGAGTACTGTCCAAAAAGTACAACTCCTATCCAAGAATTTTTTAGCTGTAAACAAATATTGCTAAAATATGGCTGCCGCTTGCCGGAAAGTGTTTGAATTTTGGCAACCGATTGTTGCTCGTTGTTAATTTTGATGTTCGGAAACTTCCGCATTTGCTGAAATTTTTAAATTGAATTTTTGTTTTTAAAATTTGCTCTGACTGCATGAAAAGATCCAAAACGTCCACGTAAATGAAATATGACCATTTTTCTCAAAAACAATCAAAAATAAATGTTCTGCACGGTGAGAACACAAAGATTTAAACTTTTGTTCGGATGTTTTGGGGGACTACGTTTTTTTTTGCAATATAAACTGAGTTTCAACACTAATTAAATGATTAACTTTTATC
s cb4.chrX              11216694 127 + 21540570 ----TATTT---------------------------------------------AAAATACA----------------TTTCCGGGTGTAAAACAGCATg--taaaa--------------------------------------------------------attaa--------------------------------------------gaatattCA------------GTTCTGACAGTTTCAAcgaatctaaa---------------------------ttttc-----------------taaatgttcttc--------------aaaattt---------------------------cttaatgTTCTTCTG----ATATACTG----------------------------------
i cb4.chrX              C 0 C 0
e caeJap4.Scaffold18137    45767  39 -   658288 I
e caeSp111.Scaffold626    389053  23 -  1189296 I
e caeRem4.Crem_Contig0   2558139  33 -  4500979 I

a score=0.000000
s ce10.chrX              5878169 3 + 17718866 TCT
e caeJap4.Scaffold18137    45767 39 -   658288 I
e cb4.chrX              11216821 0 + 21540570 C
e caeSp111.Scaffold626    389053 23 -  1189296 I
e caeRem4.Crem_Contig0   2558139 33 -  4500979 I

a score=-1080.000000
s ce10.chrX              5878172  9 + 17718866 TTAACCAA---A
s cb4.chrX              11216821  1 + 21540570 -----------A
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2558172 12 -  4500979 ttaattaaattt
i caeRem4.Crem_Contig0  I 33 C 0
s caeSp111.Scaffold626    389076 12 -  1189296 tgaactgaaatt
i caeSp111.Scaffold626  I 23 C 0
e caeJap4.Scaffold18137    45767 39 -   658288 I

a score=160966.000000
s ce10.chrX              5878181 311 + 17718866 TTCCAGCTTGGCTCATTGCTACGCATCTGTCGTAAGCGTGTCGGATCGGACAAACTTCTCATCGGATTGTTTAATGCATTTGCAAGAGCTGCTCCGGAAGACTTTGCTCTTCAACAGATGGACCCAATTGTTGCACAGCTAATCGTAGTGTTCAATAATTCATACAACAAGGTAAACAGGAACTAAAAACCAAAG------GTTCATTTTTTGT--------ACTTTTCAGCTATTGCAAATGTGTCCTGATGATGTGAGCTCCACGAGATTGTCTTCGGGATCTTCTACATCCTCCGTATCACAGGGAGCATCTTCAATCAGTA
s cb4.chrX              11216822 310 + 21540570 TTCCAGTTGGGATCTCTGCTGCGAATCTGCCGCAAAAGGGTGGGTTCCGACAAATTGCTCATCGGACTGTTCAATGCATTTGCACGTGCCGCTCCCGAAGACTTTGCACTTCAGCAGATGGACCCGATTGTCGCCCAACTCATTGTGGTTTTCAATAATTCATACAACAAGGT-AACAGGAACTAAAAGTCGAAA--CAtagatg---ttttct---------ttttgaagcTACTCCAAATGTGTCCAGATGATGTGAATGCTACACGGTTGTCATCGGGATCATCGACAAGTTCTGTTTCTCAAGGAATGCCTTCATTGagta
i cb4.chrX              C 0 I 31
s caeRem4.Crem_Contig0   2558184 315 -  4500979 ttttagttgggATCACTTCTCCGTATCTGCCGTAAACGTGTTGGTTCTGACAAATTGCTTATCGGATTGTTTAATGCATTTGCAAGAGCCGCTCCAGAAGACTTTGCACTTCAACAGATGGACCCAATTGTCGCTCAACTCATCgttgttttcaataattcataTAACAAGGT-AGCCGGAACTAAAAGTCAATGTTTGTAGGTGGTCTTTTGT---------TATTTCAGTTATTGCAAATGTGTCCCGATGAAGTGAATGCAACTAGATTGTCTTCGGGATCTTCAACATCTTCAGTTTCTCAAGGAACACCTTCTTTGAGTA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    389088 310 -  1189296 tttcagcttgGCTCTTTATTGAGAATTTGCCGTAAACGTGTTGGATCTGACAAATTGCTCATCGGATTGTTCAATGCATTTGCAAGAGCAGCGCCCGAAGACTTTGCTCTTCAGCAGATGGACCCTATTGTCGCCCAACTCATagttgttttcaataattcatACAACAAGGT-ACACGGAACTaaatgtgaaaaattgagGGTGGCATGT--------------TTTCAGCTGTTACAAATGTGTCCAGATGATGTGAATGCAACTAGGTTGTCTTCGGGATCTTCCACTTCATCCGTTTCTCAAGGAACACCTTCAATGAGTA
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    45806 308 -   658288 TTTCAGCTAGGATCCCTGCTCCGAATTTGCCGAAAACGCGTCGGCTCCGATAAACTGCTCATCGGCCTGTTTAACGCATTTGCACGAGCAGCTCCCGAAGATTTTGCACTTCAGCAAATGGATCCTGTGGTTGCTCAGCTTATAGTTGTTTTTAACAATTCTTATAACAAGGT-TTC---GTCTGAACGGCCTAG-------------TTTTCTctatttcgaaatttcagcTGCTACAATTGTGCCCAGATGATGCAAATGCCACACGGCTGTCTTCAAGGTCATCCAGCTCTTCCGCTTCACAAGGAACACCGTCTTTGAGTA
i caeJap4.Scaffold18137 I 39 C 0

a score=-5569.000000
s ce10.chrX              5878492 25 + 17718866 --TGCCAACTTG---TTATAAGTAATCTGT
s caeRem4.Crem_Contig0   2558499 18 -  4500979 ----TGTATT-----CTATGAAAGTCA---
i caeRem4.Crem_Contig0  C 0 I 10
s caeSp111.Scaffold626    389398 22 -  1189296 -----ATATTGA---TGATAAATGAGATAA
i caeSp111.Scaffold626  C 0 I 1
s caeJap4.Scaffold18137    46114 27 -   658288 GGGGAACATTTAAACTTGAAAAtaatc---
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11217132 31 + 21540570 I

a score=41690.000000
s ce10.chrX              5878517 79 + 17718866 ---------------GATTTTTGT------TTTCAGATGAAAAATTTTCTGTTCGACCG---TCGGAGAACTCCATTCAATTTGACAGTCTCAAGCAAGAGGT
s cb4.chrX              11217163 82 + 21540570 ---------------AAATAtggt------tttcagatgaaaaattctCTGTTCGctcgtcttctgaaaattcaattcaattcgATAGTCTCAAACAAGAggt
i cb4.chrX              I 31 C 0
s caeRem4.Crem_Contig0   2558527 79 -  4500979 ---------------AGTTGTATT------TTCCAGATGACAAATTTTCTGTGCGTTca---tcagaaaattcaattcaatttgatAATCTCAAACAAGAGGT
i caeRem4.Crem_Contig0  I 10 I 32
s caeSp111.Scaffold626    389421 85 -  1189296 ---------------GATCATTTTAAATCATTTCAGATGATAAGTTTTCTGTTCgatca---tcagaaaattccaTTCAATTTGATAATCTCAAGCAAGAGGT
i caeSp111.Scaffold626  I 1 C 0
s caeJap4.Scaffold18137    46141 94 -   658288 atttcaaaaaaataaaacaatttt------ttaaagatgaaAAATGCTCCCTGCGCTCA---TCAGAAAACTCGATTCAATTTGACAGTCTTAAACAAGAAgt
i caeJap4.Scaffold18137 C 0 C 0

a score=-5009.000000
s ce10.chrX              5878596 45 + 17718866 -----GTGattttttaaattttt------aatttaGTACA-TACTACTACTCTCTAA
s cb4.chrX              11217245 30 + 21540570 -----attgattttcaaatttcg------gtatacatacaa----------------
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    389506 27 -  1189296 -------AGAttatcaacttttg------aaattatttca-----------------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46235 40 -   658288 tggtcttttttttttaacattttctgaTAATCCTAATCAA-----------------
i caeJap4.Scaffold18137 C 0 C 0
e caeRem4.Crem_Contig0   2558606 32 -  4500979 I

a score=48859.000000
s ce10.chrX              5878641 117 + 17718866 AAATAATTCTTATTGAATTTAGATTTCAAAATTGCGAAAAGAATTACGAGTTGCCAACTACACTATTACTCAACTAAGGGAAAAGTCCGAAGAAGACTCGGTGATTAAAGAAAGGTA
s cb4.chrX              11217275 110 + 21540570 -----aattttctc--ttttaGATATCAAAACTCAGAAAAGAGCTCCGGATAGCAAATTACACAATCACACAACttcgagaaaaatctgaagaagaaaCAATTATCAAAGAAAGGTA
i cb4.chrX              C 0 I 1320
s caeRem4.Crem_Contig0   2558638 117 -  4500979 gaatgaactttgtcaatttcagatttcaaaactaCGGAAGGAACTTCGAGTTGCAAATTACACTATCACCCAGTTACGCGAGAAATCTGAGGAGGAATCAGTTATTAAAGAGAGGTA
i caeRem4.Crem_Contig0  I 32 C 0
s caeSp111.Scaffold626    389533 108 -  1189296 -------atatCTC--TTTCAGATTGCAAAACTAAGAAAAGAGCTCCGAGTTGCAAACTATACAATAACACAGTTACGTGAGAAATCTGAGGAAGAGGCATCTATAAAAGAAAGGTT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46275 113 -   658288 ----AAACACTATTAATTAAAGATCTCAAAACTCCGCAAAGACCTACGCGTGGCCAACTACACCATTGCTCAACTTCGTGAGAAATCTGAAGAGGATCTGGTTATTAAAGAGAGGTA
i caeJap4.Scaffold18137 C 0 C 0

a score=122.000000
s ce10.chrX              5878758 3 + 17718866 CGT
s caeRem4.Crem_Contig0   2558755 3 -  4500979 AGC
i caeRem4.Crem_Contig0  C 0 I 35
s caeSp111.Scaffold626    389641 3 -  1189296 AGT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46388 3 -   658288 CAT
i caeJap4.Scaffold18137 C 0 C 0
e cb4.chrX              11217385 1320 + 21540570 I

a score=-2199.000000
s ce10.chrX              5878761 12 + 17718866 ATGAAAAATACA-------
s caeSp111.Scaffold626    389644  4 -  1189296 TT--------TA-------
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46391 12 -   658288 -------ACATAGCCTCCG
i caeJap4.Scaffold18137 C 0 I 11
e cb4.chrX              11217385 1320 + 21540570 I
e caeRem4.Crem_Contig0   2558758 35 -  4500979 I

a score=-294.000000
s ce10.chrX              5878773 10 + 17718866 ACTCAAAAAG
s caeSp111.Scaffold626    389648  8 -  1189296 CTTCGGAA--
i caeSp111.Scaffold626  C 0 C 0
e caeJap4.Scaffold18137    46403 11 -   658288 I
e cb4.chrX              11217385 1320 + 21540570 I
e caeRem4.Crem_Contig0   2558758 35 -  4500979 I

a score=-1186.000000
s ce10.chrX              5878783 23 + 17718866 TGTCGT-ATTTCA-TCTAAACTCTA
s caeSp111.Scaffold626    389656 20 -  1189296 --TCGT--TCCCA-CCAGATACGTT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46414 24 -   658288 TGCCGTTTTTTCATTCCAATATGT-
i caeJap4.Scaffold18137 I 11 C 0
e cb4.chrX              11217385 1320 + 21540570 I
e caeRem4.Crem_Contig0   2558758 35 -  4500979 I

a score=1146.000000
s ce10.chrX              5878806 2 + 17718866 TC
s cb4.chrX              11218705 2 + 21540570 TC
i cb4.chrX              I 1320 C 0
s caeSp111.Scaffold626    389676 2 -  1189296 TC
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    46438 2 -   658288 TC
i caeJap4.Scaffold18137 C 0 I 6
e caeRem4.Crem_Contig0   2558758 35 -  4500979 I

a score=182172.000000
s ce10.chrX              5878808 327 + 17718866 CAGTTCCCTTCCACTTCCCGACTATCCGGATGCGACCGCATATTATAATTCCGCAACAAAAGAACAAACGAGTCAATTGGTCACTCGATTCGGCGAATTGTTCATATTCGCTAGCAATGTACGTGAAGATC----AATTG-------AAACGAAAAACGATGATCTT-----GAATAAAACTTTCAGGAACTCAGGGATTCATTGGATACTTTACCGGAAATGGAAGGAGAGGACGACTTGCAAGCTATTTTCGGACATGAAACCTTGATATTGACTTACAATGTGGTGAAAGAGCACATTGAAGACAGAAAGCTAGCGGTATTGAAGGCATTGGGATCTGGT
s cb4.chrX              11218707 330 + 21540570 CAGTTCTCTTCCCATTCCCGACTATCCGGATGCGACCGCATATTATAAGTCTTCCACGAAAGACCAGCTTAGTCAATTGGTCACTCGATTCGGAGAATTGTTCATTTTCGCTAGCAACGTACGTGAGAGACGTCGAAATGgcagaacaaa--acaaaacatgaGATC-----------AACTTTCAGGAACTGCGAGATTCATTGGATACTTTACCGGAAATGGAAGGAGAAGACGATTTACAAGCTATTTTTGGACATGACACCCTGATAGTAACATTTAATGTAGTCAAGGAGCACATTGAAGACAAGAAACTTGCGGTTTTGAAAGCGTTGGGATCTGGT
i cb4.chrX              C 0 I 25
s caeRem4.Crem_Contig0   2558793 325 -  4500979 CAGTGCTTTGCCTATTCCCGACTATCCGGATGCAACCGCATACTATAAATCATCCACAAAAGACCAACTGAGTCAATTGGTCACTCGATTCGGTGAATTGTTCATATTCGCAAGCAACGTACGTGAGGATC----ACATG-------AAA--ACAGAACTTGATCTT-----CACCAAAACTTTCAGGAATTGCGAGATTCATTGGATACATTACCGGAAATGGAAGGGGAAGACGACTTGCAAGCTATTTTCGGTCATGAGACTTTGATAGTCACTTACAATGTAGTCAAAGAGCACATTGAAGATAGAAAATTGGCTGTTTTGAAAGCTTTGGGATCAGGT
i caeRem4.Crem_Contig0  I 35 C 0
s caeSp111.Scaffold626    389678 322 -  1189296 CAGTTCTTTGCCTCTTCCCGATTATCCGGATGCAACCGCATATTATAATTCATCAACAAAAGACCAACTGAGTCAATTGGTCACTCGATTCGGCGAATTGTTCATTTTCGCTAGCAATGTA----AGGATC--------G-------GCA--ACAAAAGttgatctttttgtttcctaatttttcaggaactCCGAGATTCATTGGATACTTTACCGGAAATGGAAGGAGAAGACGACATTCAAGCTATTTTCGGTCATGAAACTTTGATACACACTTTTAATGTGGTAAAAGAATACATCGAGGACAGAAAACTCTCGATTTTGAAAGCATTGGGATCTGGT
i caeSp111.Scaffold626  C 0 I 18
s caeJap4.Scaffold18137    46446 320 -   658288 CAGTTCCCTTCCGGTTCCCGATTACCCAGAAGCCACGGCTTATTATAAGTCGACATCAAAAGATCAATTGAGCCAATTAGTGACGCGATTTGGAGAATTGTTCATCTTTGCTAGCAATGTACATAATAAAT------ACG-------GAA--AAAGTTCCTAAAATC-----AAGTAA---TTTCAGGAACTCCGCGACTCATTGGATACTATACCGGAAATGGAGGGAGAAGACGGCATCCAGGCGATTTTCGGGCATGAAACTTTGATTGTTACGTACAATGTGGTCAAGGAGTATCTTGAAGATaaaaaaaTCGCTGTTCTGAAAGCGTTGGGATCTGGT
i caeJap4.Scaffold18137 I 6 I 27

a score=755.000000
s ce10.chrX              5879135 21 + 17718866 TAG---TAGTGAAGGTTTTTTGCA
s caeRem4.Crem_Contig0   2559118 24 -  4500979 TAGTCATAGTAgtagttttttgta
i caeRem4.Crem_Contig0  C 0 C 0
e caeJap4.Scaffold18137    46766 27 -   658288 I
e cb4.chrX              11219037 25 + 21540570 I
e caeSp111.Scaffold626    390000 18 -  1189296 I

a score=0.000000
s ce10.chrX              5879156 741 + 17718866  
e caeJap4.Scaffold18137    46766  27 -   658288 I
e cb4.chrX              11219037  25 + 21540570 I
e caeSp111.Scaffold626    390000  18 -  1189296 I
e caeRem4.Crem_Contig0   2559142   0 -  4500979 C

a score=151.000000
s ce10.chrX              5879897 3 + 17718866 AAC
s caeRem4.Crem_Contig0   2559142 3 -  4500979 aat
i caeRem4.Crem_Contig0  C 0 C 0
e caeJap4.Scaffold18137    46766 27 -   658288 I
e cb4.chrX              11219037 25 + 21540570 I
e caeSp111.Scaffold626    390000 18 -  1189296 I

a score=43.000000
s ce10.chrX              5879900 3 + 17718866 ACG
s caeRem4.Crem_Contig0   2559145 3 -  4500979 att
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390018 3 -  1189296 Aca
i caeSp111.Scaffold626  I 18 C 0
e caeJap4.Scaffold18137    46766 27 -   658288 I
e cb4.chrX              11219037 25 + 21540570 I

a score=1077.000000
s ce10.chrX              5879903 3 + 17718866 TTG
s caeRem4.Crem_Contig0   2559148 3 -  4500979 ttg
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390021 3 -  1189296 tgg
i caeSp111.Scaffold626  C 0 I 2
s caeJap4.Scaffold18137    46793 3 -   658288 TTg
i caeJap4.Scaffold18137 I 27 C 0
e cb4.chrX              11219037 25 + 21540570 I

a score=51123.000000
s ce10.chrX              5879906 157 + 17718866 AAAAATTTGTGTTTTCAGTAAATAACAATGCCAAAGAATCGAATGAATTGACAATGTTTGAAGATGCATTGAGTTCACAGCTTCACAAAGAGTTCACCACAACAAAAGCTGGAGGCCATATTGCAGAGGTAACTTAAAAACTTGTCATCAAAATTTT
s cb4.chrX              11219062 150 + 21540570 AAGAGTTTATTTTCT-AGATAACAATAATGCAACAGAATCTAAGGAATTAACCATTTTCGAGAATGCTTTGAGTTCACAACTGTATAAGGAATTTACCACAACTAAAGCTGGAGGAGCAATAGCTGAGGTAAC------ATTTGCTACCGTAaattc
i cb4.chrX              I 25 C 0
s caeRem4.Crem_Contig0   2559151 122 -  4500979 -atatttta-------agATAACAACAATGCAACAGAGTCAAAGGAattaactatttttgaaaatgcattGAGTTCCCAGTTATACAAAGAGTTCACTACAACAAAAGCTGGGGGTTTAATTTCAGAGGT---------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390026 129 -  1189296 aatatttttcattat-agATAATAACAATGCAACTGAATCAAAGGAGCttactatttttgaaactgcaTTAAGTTTCCAGTTACATAAAGAGTTCAGCACTACAAAGGCTGGTGGATTAATTGCCGAGGT---------------------------
i caeSp111.Scaffold626  I 2 C 0
s caeJap4.Scaffold18137    46796 145 -   658288 taaagtttatttttc-agtAAACAACAATGCAAAACAGTCAAAGGAGCTGACAACTTTTGAAGAAGCTTTGGATAGTCAATTGTACAAAGAGTTTTCTACTACCAAAGCTGGGGGACAGATTGCTGAGGT-----------Atgtattcaaattttt
i caeJap4.Scaffold18137 C 0 I 2281

a score=-7147.000000
s ce10.chrX              5880063 46 + 17718866 AAAGCCTGACTCAAAATGA-------------ATGCAA-ACTTCTTTCAACCATTTGTTC
s cb4.chrX              11219212 56 + 21540570 ----tctaatagaatgtcACCACATCTGTCTAAAACAGGGCCGCGTCTttgaatttgagc
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2559273 28 -  4500979 --------------------------------ACACAATGCTTCATTTTAATGTTTAGTC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390155 23 -  1189296 --------------------------------TTGTAATTCCTCCAGTTAATTTC-----
i caeSp111.Scaffold626  C 0 C 0
e caeJap4.Scaffold18137    46941 2281 -   658288 I

a score=556.000000
s ce10.chrX              5880109 6 + 17718866 TATATT
s cb4.chrX              11219268 6 + 21540570 tcaatt
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    390178 6 -  1189296 CATATT
i caeSp111.Scaffold626  C 0 C 0
e caeJap4.Scaffold18137    46941 2281 -   658288 I
e caeRem4.Crem_Contig0   2559301 0 -  4500979 C

a score=-181.000000
s ce10.chrX              5880115  97 + 17718866 CTCAGAGATCCTAGTATCAAGAAGCTAAAACTTATAGGTTGACAAATA------------ATCACTACCGACTACatataaatt------atctaaatataatttaagaaaaaaa
s cb4.chrX              11219274 111 + 21540570 atctcggattACAAGAG-AGAAAGCCAAAACGTCTCAACTGATAACCTTCTTTTCGTGATATCACTAACGCTT---TTTTAGTTCTCAGGATTTCGATATCGCttacgaaaattg
i cb4.chrX              C 0 C 0
e caeJap4.Scaffold18137    46941 2281 -   658288 I
e caeSp111.Scaffold626    390184   0 -  1189296 C
e caeRem4.Crem_Contig0   2559301   0 -  4500979 C

a score=-1927.000000
s ce10.chrX              5880212 39 + 17718866 aaaGTAAATTGACAAATACGTCAATTA---TTTGCCGACCTA
s cb4.chrX              11219385 40 + 21540570 --agataattgagaacAAAGTGAAGTATATtttgacgttcta
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2559301 15 -  4500979 -----------------AAATTAAATTCGTTT----------
i caeRem4.Crem_Contig0  C 0 C 0
e caeJap4.Scaffold18137    46941 2281 -   658288 I
e caeSp111.Scaffold626    390184  0 -  1189296 C

a score=-1487.000000
s ce10.chrX              5880251  6 + 17718866 ---------------------------------------ATATAA
s cb4.chrX              11219425 45 + 21540570 ttagagcataacggtttctgaaattatgtttCGCCAGCTTTATGA
i cb4.chrX              C 0 C 0
s caeSp111.Scaffold626    390184  6 -  1189296 ---------------------------------------GTATAA
i caeSp111.Scaffold626  C 0 C 0
e caeJap4.Scaffold18137    46941 2281 -   658288 I
e caeRem4.Crem_Contig0   2559316  0 -  4500979 C

a score=72133.000000
s ce10.chrX              5880257 147 + 17718866 CATTTTTCCAGGATCTGTGCCAGCAAGTATTCAAGAAGCTTGACGAGTACCCCGGAGTTGAAGAATGTCTAACTATTCATCAATACATCCAAAAATGTATATCAATATCATGGGACATTCAATGCTGCCCGGAACGAAAGTGAGTCT
s cb4.chrX              11219470 141 + 21540570 AA----TTCAGGAACTATGTCAGGAGGTATTCAAGAAGCTGAAAGAGTATCCTGGCATTGAAGAATGTATGACAGTGCACCAGTTTATCCAAAAATGTATCACAATGTCATGGGATATTCAATGTTGCCCGGATCATAAGTGAGT--
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2559316 139 -  4500979 ------TTTAGGAACTCTGCCAAgaagtgttcaaaaaattgaacgaCTATCCAGGCATTGACGAGTGTCTAACAGTTCACCAATTCATTCAAAAGTGTATTTCAATGTCTTGGGACATCCAATGTTGTCCAGAGAACAAGTAAGT--
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390190 143 -  1189296 TA----TTCAGGAACTCTGCCaagatgttttcaaaaagctgaAAGATTATCCGGGAGTCGATGAATGCATAACAGTCCACcaatatattcaaaaatgtattaCCATTTCCTGGGATATTCAATGTTGCCCTGATCATAAGTAAGTTT
i caeSp111.Scaffold626  C 0 C 0
s caeJap4.Scaffold18137    49222 147 -   658288 CAATTTTCCAGGAGCTTTCCCaagaagttttcaaaaaactgaccGACTATCCAGGAGTTGACGAGTGCATTACAGTTCACCAATTCATCCAGAAATGCCTTCAAATTTCATTCGAAATTCAATGTTGTCCAGATCAAAAGTAAGTTT
i caeJap4.Scaffold18137 I 2281 I 308

a score=-702.000000
s ce10.chrX              5880404  4 + 17718866 TTTT-----------
s caeSp111.Scaffold626    390333 15 -  1189296 TCTAAGTTGACTTGT
i caeSp111.Scaffold626  C 0 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11219611  0 + 21540570 C
e caeRem4.Crem_Contig0   2559455  0 -  4500979 C

a score=-11156.000000
s ce10.chrX              5880408 138 + 17718866 ----------------TTTGTAATATTGGTCCCCAGCC---------TCCATATAACTTTTTCTGGCACGTCATTGATTTTACTTATTTAAATTATTCACACCTCCGCCGCAAAACCTCCCCCTCCGAAAA---TCTAAAATTGTCACTGCAA-TTTAGAATTTTTG
s cb4.chrX              11219611  97 + 21540570 gagatttc------tgtttttccttt------tttatt------------gtttcatt------------tctGCGATTTGAATT-CCTA---CGTCCAC------------------cttctg-----ggtt-actgtaatcaCTGCAATAG------AATTCCTG
i cb4.chrX              C 0 I 453
s caeRem4.Crem_Contig0   2559455 135 -  4500979 TTGATCCCCGACGATGTGTTTAGTTTAAGAACTAAATA------------ATATGATT----------CGTCACAGATTAGAATTATTTA---GGTTCACACATGTCCC-----TTTGCTTCTGtcaaaaata-tctgaaatcacTATTGGAA-TCAGTAATTATTG
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390348 110 -  1189296 ----------------TTTTTAACTTTCGTCATTTGTCGTTTTGAACTCGATATGGTT----------CGTCACAGATCAGAATT---------ATTCAATGAGGTG------------TTCCGTCAAAAT---ACTGAAATCACT-------TTTGAGAATTATTG
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_24            3 114 -  1074995 ----------------tttctaa-ttttgacCTTCATC------------ATATCATT----------CGTCATTGATCAGAATT---------ATTCACAGAGACGTT-----CTCGCTTCCGTCAAAACTAAACTGAAATCACTATTGGAACTTGGGAAATATTC
i caePb3.Scfld02_24     N 0 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I

a score=-897.000000
s ce10.chrX              5880546 144 + 17718866 ATAGG-GTTCGAATTTTTCTGGAAAAAAATACCCCA----GCATCT-------CCAAAATT--------------GTTCCTGGTGATGATTTTTGAATTTCAGAACGTCACTTAAAAACTTCCGATG-TCTTTTTCTGCGATATT---------------TCTATTTTAAAATATG----------CCGACCATTT---------
s caeRem4.Crem_Contig0   2559590 171 -  4500979 ATGTG-GTCCCACTTTACCTAAAAACATACACCCAG--TCATACTA-GGCAATCTGGGTTT---------------------Atgtg-atttctgaatttctgaacGTTACCC---TACTTCCGGGGAcataatccaaaaaacattcgCAGAAAT-----TCcttacaaaaatatttctgggaaaaaagagtgttttctacattt
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390458 165 -  1189296 ATATCGGTCTCAatttcccccaaaaaaaacatatagCAAGTCACTATGAGGATCTAAGTTTTAGCAGC-------TTTCC--Gtgag-atttctgaatttttgaacagcGTTC---GACTTCCGGgaccatttttcaaaaacatccCAAAAAGAA--------TTCCCGAAATGTT----------AAGAGTGTTT---------
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_24          117 168 -  1074995 ATGAC----------CCCTCccaaaaaaacatcgaa-aatacACCA-------CTTAGTTCCAGCATTATTTCAGATTCC--ATGAGAATccctgaatttctgaaattgctcc---aACTTCCggga-catttttcaaaaacattcagcaaaaaagtttttcgtttccaaaatgttttttgg----aagagtatTT---------
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11219708 453 + 21540570 I

a score=31209.000000
s ce10.chrX              5880690 68 + 17718866 -----------TTCTTCTC-TGGCACTGACAAATTGAGGTTCATCAAAAGTTCGTGCTTCT-----------TGACACCTGAGCATAGAAT
s cb4.chrX              11220161 61 + 21540570 -----------TTCTCCCT-TGGCAGTGACAAATCGAGGATCATCAAAAGTTCGTGCTTCT-----------TGGTACCAGAAT-------
i cb4.chrX              I 453 C 0
s caeRem4.Crem_Contig0   2559761 73 -  4500979 -----------ttcttcttgtggCATTGACAAATCGATGTTCATCAAAAGTTCGTGCTTCTGTCACCGGAAATGGCACCAGAAT-------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390623 72 -  1189296 CGGTC-----GTATTTCTC-CTGT--TGACAAATTGGGGTTCATCAAAAGTTCGTGCTTCT-----------TGACACCCGAATATGGAAT
i caeSp111.Scaffold626  C 0 C 0
s caePb3.Scfld02_24          285 79 -  1074995 TGGTCCATATGTCTTCCCC-CGGCAATGACAAATCGAGGTTCATCAAAAGTTCGTGTTTCT-----------TGACACCAGAatatagaat
i caePb3.Scfld02_24     C 0 I 8
e caeJap4.Scaffold18137    49369 308 -   658288 I

a score=-3879.000000
s ce10.chrX              5880758 75 + 17718866 ATACAATGAG---------AGA----CTTGTACACCCACAT-----GTTTGTAATGATG---AATAACTTCCATTTGCAAATGTTCATTTGAAGAT
s cb4.chrX              11220222 94 + 21540570 ATGGGATGAgaggaataagaaaaaatgttgtaCACCCACAT-TAGATGTTGTAGGGATGAATAATAACTTCCTCTTGGTGATGAT-ATCAGAGGAT
i cb4.chrX              C 0 I 52
s caeRem4.Crem_Contig0   2559834 60 -  4500979 ATCAGATGAGATATGT---GGAAAATTTTATACACCCACAT-CAG------------------------------TGCTGAGAAT-GTTCGAGAT-
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24          372 66 -  1074995 gtggaATGAG---------GGAATATAGACTACACCCACATGTATGTTTTAGATGGA------------------TGACATGGTT-GTTTGGAT--
i caePb3.Scfld02_24     I 8 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e caeSp111.Scaffold626    390695  0 -  1189296 C

a score=-707.000000
s ce10.chrX              5880833 21 + 17718866 GGGGAATTTTTTTTGGCTATT
s caeRem4.Crem_Contig0   2559894  7 -  4500979 --------------GGATGAT
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24          438 14 -  1074995 ---GAA----TATTGGCTGAT
i caePb3.Scfld02_24     C 0 I 11
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I
e caeSp111.Scaffold626    390695  0 -  1189296 C

a score=0.000000
s ce10.chrX              5880854 20 + 17718866 TTTGTAATTTCTTATTCCCT
e caePb3.Scfld02_24          452 11 -  1074995 I
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I
e caeSp111.Scaffold626    390695  0 -  1189296 C
e caeRem4.Crem_Contig0   2559901  0 -  4500979 C

a score=-3520.000000
s ce10.chrX              5880874 76 + 17718866 AACTTTCATAGTATCTAGGTATATCAGCTGGAGGAAATAAAAGTTGTTAAAAAACTTTTGTTTTCATTTCTAGTTT--
s caeRem4.Crem_Contig0   2559901 23 -  4500979 -------------------------AACttcctctgaaaaaaattctg------------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24          463 63 -  1074995 AATTATGATA---------------AAATACAGATAACAAGGATTTTGGGAGAGCTTTTGTTcgcattgaaaaatgat
i caePb3.Scfld02_24     I 11 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I
e caeSp111.Scaffold626    390695  0 -  1189296 C

a score=-13687.000000
s ce10.chrX              5880950 133 + 17718866 TTAGAATGACTGTTTTTCATAACCAAAATCAAAATTCAAG-TGATGTCCAAATAATCACATTTCCGTTTTTCAAGTGATTCCCCCCAATATCTGAAC----TTTTTATGTGGTGGAATGTTTTTTTTTCATGTTTTGA
s caeRem4.Crem_Contig0   2559924  74 -  4500979 -----------------------caaagtcgagaa------agaaattgaaccaaaaataCCCTTGGTTCCTG----GTCCCCGTTAgtcatt---cgaaatttttgggt----------------------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390695  69 -  1189296 ----------------------TCAggatgagaaa------tgagaattccCACACTACACCCCC--------------ACCAATGAATGATT---C----CTTTCAGga--------------------cgttttga
i caeSp111.Scaffold626  C 0 I 23
s caePb3.Scfld02_24          526  90 -  1074995 ttagaa--------------AAACATCACCAGAAacattgttgatttttctgaaattacaaactCATTATCAg------atcaatcaatattt---c----cttttccgt--------------------tctctta-
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316  52 + 21540570 I

a score=-3097.000000
s ce10.chrX              5881083 57 + 17718866 TTTTCAGACTTGATATATAAGA-TTTTATTTTCCATTAACAATTCTA------GAAATCCAATC
s caeRem4.Crem_Contig0   2559998 30 -  4500979 ---tCA-------CGTATCAGAAGTTCA-------CTAACTATACTA-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24          616 55 -  1074995 ttttcaaaatcttcaaattctaGGTTTATTTT---CTAACCCCTCAATTTCGGGAGAC------
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I
e caeSp111.Scaffold626    390764 23 -  1189296 I

a score=-7617.000000
s ce10.chrX              5881140 58 + 17718866 TGTTTGCCTTCGTGTAAGCGAACACATTGGAAAAAAACGTCTCGAACTTTTGCTCGAA
s caeRem4.Crem_Contig0   2560028 16 -  4500979 --------------TGAAATAA----------------------TAAGTCAA------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390787 41 -  1189296 TGTTTACCCT--TTTGAACCAa-------------aggtttcgaaatgttttcgAA--
i caeSp111.Scaffold626  I 23 I 16
s caePb3.Scfld02_24          671 41 -  1074995 ------------TCTaaacaaa---atcacaaaagaaGTTCCCTTGAGTTCACTAG--
i caePb3.Scfld02_24     C 0 I 2
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I

a score=-2413.000000
s ce10.chrX              5881198 45 + 17718866 TCCTCAGAATAGAACATATGTGCCGACCTGACAAACAGTGCCACA
s caeRem4.Crem_Contig0   2560044 20 -  4500979 -------------TCACATAgtca--cctgaaaaa----------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24          714 41 -  1074995 --TTATAAatcaatcactttttcc--aatgaaaaaacttcTCGTG
i caePb3.Scfld02_24     I 2 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I
e caeSp111.Scaffold626    390828 16 -  1189296 I

a score=-3570.000000
s ce10.chrX              5881243 29 + 17718866 ATAAATCAAATCCCAGCCACTGCAGAAAA
s caeRem4.Crem_Contig0   2560064  6 -  4500979 -------aaacct----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390844 25 -  1189296 ATAACTCAAAATCCATC----GGAAAAAG
i caeSp111.Scaffold626  I 16 I 5
s caePb3.Scfld02_24          755  9 -  1074995 -------AAAAGC-------------GAA
i caePb3.Scfld02_24     C 0 I 5
e caeJap4.Scaffold18137    49369 308 -   658288 I
e cb4.chrX              11220316 52 + 21540570 I

a score=14991.000000
s ce10.chrX              5881272 60 + 17718866 ACCTGACTTTTCCGAT--------ATTAATAAATTCAA-TCCACCCACGG---AACGCGCCCATAACTCATC
s cb4.chrX              11220368 67 + 21540570 ACCTGACTTTTCTAAACCTAAAACATTAGTAAATCA---TTTGCCCCCATCCAAA--CTgccctaatttttt
i cb4.chrX              I 52 C 0
s caeRem4.Crem_Contig0   2560070 53 -  4500979 acctgactttcttcaa--------aataataaatc------tACCCACGC---AA--CAACCATAACTCATC
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390874 54 -  1189296 ACCTGAGTTTGGTGAA--------ACTAATAAAT-----TGTGCCTACAG---AC--CAATCATAATTCACC
i caeSp111.Scaffold626  I 5 C 0
s caePb3.Scfld02_24          769 59 -  1074995 ACCTGACTTTCCTGAA--------ACTAATAAATCTACATCCACCTACGG---AA--CAATCATAACTCAcc
i caePb3.Scfld02_24     I 5 C 0
e caeJap4.Scaffold18137    49369 308 -   658288 I

a score=152353.000000
s ce10.chrX              5881332 172 + 17718866 A----TATCCTATTGCAGATTGAAGTTAGAGTACGACGGAGCCGAGTTCGAGCCGTCCCGTCATTCCAGAGGAGCTTACTCGGGAACAACCAACCAAGTTGTCAACTTCATATGGCCTGCGCTGATTGATACTTCAGACAATCGAGTCCTTCTTAAAGCGATTGTTTTGACATGAT
s cb4.chrX              11220435 171 + 21540570 t-----ttcatttttcagattgaaattggaatacgatggcctagaatttgaGCCGTCACGTCACTCAAGAGGTGCTTACTCTGGAACTACCACCaacgttgtcaactacatTTGGCCAGCTATGATTGATACATCTGACAATCGTGTCCTTCTGAAAGCGATTGTTTTGACATGAG
i cb4.chrX              C 0 C 0
s caeRem4.Crem_Contig0   2560123 167 -  4500979 T---------TATTACAGATTAAAATTGGAATACGACGGAATAGAGTTCGAGCCGACACGTCACTCAAGAGGTGCTTACTCGGGAACTACCAATCACATTGTCAACTATATATGGCCGTCTCTGATAGATACATCAAACAATCGTGTTCTTTTGAAGGCGATTGTTTTGACATAAT
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    390928 172 -  1189296 C----TTTCcgatttcagattgaaatTGGACTACGAAGGAATTGAGTTCGAGCCGTCACGTCACTCAAGAGGTGCTTACTCTGGAACTACGAACCATGTTGTCAACTTCATCTGGCCAGCTCTGATTGATACATTGAACAATCGAGTCCTATTGAAAGCGATTGTTTTGACATGAT
i caeSp111.Scaffold626  C 0 I 610
s caePb3.Scfld02_24          828 176 -  1074995 ccgttttttttattccagattGAAATTGGAGTACGATGGAGTAGAGTTCGAGCCGTCACGTCACTCAAGGGGTGCTTATTCTGGAACTACGAACCATGTTGTCAACTTCATCTGGCCAGCTCTGATTGATACAACGGACAATCGAGTCCTTCTGAAAGCAATTGTTTTGACATGAT
i caePb3.Scfld02_24     C 0 C 0
s caeJap4.Scaffold18137    49677 172 -   658288 ----atatttaatttcagaCTAAAACTAGAATACGACGGTACAGAATTCGAGCCAGCTCGTCATTCTCGAGGCGCCTATTCCGGCACTACAAATCACATTGTCAACTTTATCTGGCCGGCTCTAATTGATACGGCTCATAATCGAGTGCTTCTTAAGGCTATTGTTTTGACGTGAT
i caeJap4.Scaffold18137 I 308 I 2

a score=1097.000000
s ce10.chrX              5881504 2 + 17718866 AA
s cb4.chrX              11220606 2 + 21540570 AA
i cb4.chrX              C 0 I 1289
s caeRem4.Crem_Contig0   2560290 2 -  4500979 GA
i caeRem4.Crem_Contig0  C 0 I 602
s caePb3.Scfld02_24         1004 2 -  1074995 GA
i caePb3.Scfld02_24     C 0 C 0
s caeJap4.Scaffold18137    49851 2 -   658288 AA
i caeJap4.Scaffold18137 I 2 C 0
e caeSp111.Scaffold626    391100 610 -  1189296 I

a score=319.000000
s ce10.chrX              5881506 7 + 17718866 GCAATGA
s caeJap4.Scaffold18137    49853 7 -   658288 TCAATAA
i caeJap4.Scaffold18137 C 0 I 599
e caePb3.Scfld02_24         1006 0 -  1074995 C
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391100 610 -  1189296 I
e caeRem4.Crem_Contig0   2560292 602 -  4500979 I

a score=-1960.000000
s ce10.chrX              5881513 257 + 17718866 ATCACGTGGTTTCTGGGTACACCAACAAAATTCGCTCAAGAATTG-------------------AAAACTAATTAACCAAGGTGTCCGTTAAGTATTTGCTCCATCCTCAAAAGT-TATA-------------------------ATCATATG----ATATTTTGAGAAA-------------CTTTGATTGTTAACTTCTAAAGTTGTAGCTTTCTCGGCCAAATCTATGTATTTCGTGTAAATAAACAAATGTTCA-----------------------------------TCAGAAAGTCAC------TTCAGCTTCAAGTCTTTTATTTATTTTA--TTGCTTTACGTGAATACTGAT
s caePb3.Scfld02_24         1006 356 -  1074995 --TGCAtcgttttttggaagatttaaTGTCTTCAGAAAAGAATTATTTATCAGTATCCATATGAACAACAAGACGATAAAGTCTTCTATTATAAGTATTCTTCGTCTTTATGTGTATATAGACACTTTCTTCCTTCCACATCTTCACCACCTGCTCCATTtgtcaaaaaagtcatttttcaatttttgattcctgAGAACTACACTAGTA-TTTCATCTGTTTGAAGTCGGCTTCTTCTGTAAATAAACAA---TTCAAATTCGGAGTCTTAACAAAGCAtctaaaaaaagttttagaaattcatggattttttgtgttcagaattttcgatgatttgAGATGACCCCACTTGAATTCTAGT
i caePb3.Scfld02_24     C 0 I 31
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391100 610 -  1189296 I
e caeRem4.Crem_Contig0   2560292 602 -  4500979 I

a score=0.000000
s ce10.chrX              5881770 18 + 17718866 TTTAAGACTTTTTTCATA
e caePb3.Scfld02_24         1362 31 -  1074995 I
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391100 610 -  1189296 I
e caeRem4.Crem_Contig0   2560292 602 -  4500979 I

a score=-549.000000
s ce10.chrX              5881788 177 + 17718866 TTTTTCTATACG----AATACGAAAATGTTGAACGACTTCTGAAAAACAACATTTCTTT---AGGAATTTCAATAGTTT-----------------AGTAGTGATGCATTAATTAGTAGATGACACTTT--------------TCTAAGTCTTTCTTTTTTAAAA---GAGTTTCACAAAGAAACGT-----------TCGATCTATTTT------TCTACTCAT--TCAGTTCGTA
s caePb3.Scfld02_24         1393 236 -  1074995 TTTTTCGATGCGGGGGAGTTCGTtgcttttgagtt-tttttcaagcacaaattttgtttttcagaattttgaaaaattttaggaacGGTCTTTGTGcgtaataaaaaattatgaaataaatCTCATTCTCATCTTCTTAGGATTATTAATCTTCCTATTTTTGAGTCTGTGGTATATTGAAAACCATGTGCAGGTGGATTGATATATTTTACTTCCTCTACTTGCCGTCGTTTTATG
i caePb3.Scfld02_24     I 31 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391100 610 -  1189296 I
e caeRem4.Crem_Contig0   2560292 602 -  4500979 I

a score=322.000000
s ce10.chrX              5881965 32 + 17718866 AAAATTGGA---TTATTTCCATGTTT----TTTGTTAGA-
s caeRem4.Crem_Contig0   2560894 35 -  4500979 AAAACTGCG-TTTTGATATCAAATTT----TCCTTTCATC
i caeRem4.Crem_Contig0  I 602 C 0
s caePb3.Scfld02_24         1629 39 -  1074995 -AAACTGCGTTTTtgatatcatattttttctccactcATC
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391100 610 -  1189296 I

a score=32519.000000
s ce10.chrX              5881997 105 + 17718866 ATTTCCTATTCA------------AGTATCTTGTCACTTATAAAATGAAAGAAAACGTCAGAAATTAACGCGTATTCTAAGAAATATTACCGGAAGGTGATTCAGTCTAGCGTGAAG
s caeRem4.Crem_Contig0   2560929 112 -  4500979 ATTTCCTATTCACAAT-AATTTTAAGCGTTTTGTCATTTGTGAAAT----GAAAACGTCACAAATTACAACATCTTCTTAGAAAATTGATAGACTGGTCATCCAGTCTAGCGGAAAA
i caeRem4.Crem_Contig0  C 0 C 0
s caeSp111.Scaffold626    391710 114 -  1189296 ATTTCTTATTCACAATAAATTCTCCTCATtctgtcatttttgaaatt---aaaaacgtCAAGAATTACAACATTTTCTTAGAAAATTGATAGACCAGTCATTCAGTCTAGCGTAAAG
i caeSp111.Scaffold626  I 610 I 452
s caePb3.Scfld02_24         1668 116 -  1074995 ATTTCTTATTCACAACAAATTCGCATCGTTTTGtcatttgtgaaaat-gaaaaaacgtcAGGAATTACAACATCTTCTTAGAAAATTGATAGACTGGTCATCCAGTCTAGcgtgaaa
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I

a score=619.000000
s ce10.chrX              5882102 6 + 17718866 CTGGAG
s caeRem4.Crem_Contig0   2561041 6 -  4500979 AAGGAg
i caeRem4.Crem_Contig0  C 0 I 466
s caePb3.Scfld02_24         1784 6 -  1074995 atagag
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I

a score=201.000000
s ce10.chrX              5882108 19 + 17718866 AAATTACACGTTTTCTCAT
s caePb3.Scfld02_24         1790 14 -  1074995 aaa-----agtattttcat
i caePb3.Scfld02_24     C 0 I 49
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I
e caeRem4.Crem_Contig0   2561047 466 -  4500979 I

a score=0.000000
s ce10.chrX              5882127 37 + 17718866 CAATTACACTGTAAGAAGCGTAAAAGAGCAGCGAGTG
e caePb3.Scfld02_24         1804 49 -  1074995 I
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I
e caeRem4.Crem_Contig0   2561047 466 -  4500979 I

a score=-6001.000000
s ce10.chrX              5882164 748 + 17718866  
s caePb3.Scfld02_24         1853 436 -  1074995  
i caePb3.Scfld02_24     I 49 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I
e caeRem4.Crem_Contig0   2561047 466 -  4500979 I

a score=-717.000000
s ce10.chrX              5882912 81 + 17718866 CTGCTTGCAACTATTTTTTTACTCATAACTCTCCGCTGATTATTCCTCCCCATTGTGACTCTATGATCGCAGAAACTAATA
s caeRem4.Crem_Contig0   2561513 67 -  4500979 CTGCCTGCAATTGCGTgctttctcaaaatt------------ttcttatccgagTTTATTC--TGATTGCAAAAAGTGATG
i caeRem4.Crem_Contig0  I 466 C 0
s caePb3.Scfld02_24         2289 54 -  1074995 ttttttccaattgtttaACAATTCGGTGCT------------TCCCCTCCCA-----------TGATTCAAAACCAT----
i caePb3.Scfld02_24     C 0 C 0
e caeJap4.Scaffold18137    49860 599 -   658288 I
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I

a score=254.000000
s ce10.chrX              5882993 4 + 17718866 AAAA
s caeRem4.Crem_Contig0   2561580 4 -  4500979 CATA
i caeRem4.Crem_Contig0  C 0 C 0
s caeJap4.Scaffold18137    50459 4 -   658288 AAAA
i caeJap4.Scaffold18137 I 599 C 0
e caePb3.Scfld02_24         2343 0 -  1074995 C
e cb4.chrX              11220608 1289 + 21540570 I
e caeSp111.Scaffold626    391824 452 -  1189296 I

a score=-15497.000000
s ce10.chrX              5882997 117 + 17718866 GATAATGACGAATCCCA-AATTTTAGATGACTTT---TTAGG----CATCTTCCATGCTCAATGAGCTTCTCACGTTCTAATCAAAAACTGCT-----TCTTCCCCCGCAT---CCTCAT--AAA--AACAGGCTAG-----
s cb4.chrX              11221897 102 + 21540570 GATATTGACGAAtccctaaaattttgattactTT---GTCAG----CATCACCAG---------------CCAT-TgctaatcaaattttttttcgattcttctcCCTTTTTTGTGTCCCTGAAG-----------------
i cb4.chrX              I 1289 C 0
s caeRem4.Crem_Contig0   2561584 106 -  4500979 TGTACTAACGAATCCTT-AAATTTTGATTGCATT---GTCTGGGGACAAAATCGGG----------TTACTGAC-TTTCAATTAAGAATTTCT--GTTTTACCTTCCATTCAACTGACTC--GAG-----------------
i caeRem4.Crem_Contig0  C 0 C 0
s caePb3.Scfld02_24         2343 106 -  1074995 GATACAGacgaatttca-atttcttgattACTTTCACCTCCGCAATCATCATTCGTCCC-----ACTCACTCACGTGctaatcaaaaagttat----------acCCTTTT---TGTCCC--AAATG---------------
i caePb3.Scfld02_24     C 0 C 0
s caeJap4.Scaffold18137    50463 112 -   658288 AATCATGAGTATGCATC-ACTTTTTGATGACAAT---GTCT-----CATACTACAaaacttttctctttttttt-tactaatcAAGCGTGTCC--------TGTCCTGCTTGCCTGCCCATAAAA------------ACTTG
i caeJap4.Scaffold18137 C 0 C 0
e caeSp111.Scaffold626    391824 452 -  1189296 I

a score=16317.000000
s ce10.chrX              5883114 180 + 17718866 TATTACTC--ATATCGGTGCCCATTTTTG--ACTTTATTCTATTCAACATGA----ATTCCCTTGTCGCAGTTGAATC---AAAAAATAAAATAAACA----TGACGTTATGATTTC-A--------------------ATAAAAACTA-TGAGTAGATGACAACTACTACA-------------TGTTGATCAGCAGTACTCTAAGAAGTGCACTT-CGGAAAGATA--TTT
s cb4.chrX              11221999 156 + 21540570 TATTACTA--ATAGAAG-------------------------------TTGA----ATACTGTTGTATTCTTAAACTT------GGAAATCAGAAATATAAGTGACGTTATGAATtt-